1356 84 6 0 chr6 4 182 -182415060 + MER4E LTR ERV1 588 766 0 2115 141 33 25 chr6 197 558 -182414684 - THE1B LTR MaLR 0 364 1 229 217 169 12 chr6 723 806 -182414436 - LTR33A LTR ERVL -364 159 64 1772 262 100 23 chr6 859 1629 -182413613 + HAL1 LINE L1 1673 2501 -6 182 273 171 23 chr6 3283 3371 -182411871 + L2 LINE L2 3166 3266 -6 2354 96 0 10 chr6 4049 4361 -182410881 - AluSc SINE Alu 0 309 1 3187 88 31 2 chr6 4848 5301 -182409941 - L1PA10 LINE L1 -5 6163 5698 393 95 0 0 chr6 5366 5429 -182409813 + (TA)n Simple_repeat Simple_repeat 1 63 0 2222 140 88 25 chr6 5431 5839 -182409403 + Tigger2a DNA MER2_type 1 434 0 474 283 82 22 chr6 6670 6854 -182408388 + L2 LINE L2 3118 3312 -1 1010 283 134 27 chr6 8204 8478 -182406764 - L2 LINE L2 -1 3312 3069 6665 38 48 0 chr6 8478 9312 -182405930 + L1PA5 LINE L1 5273 6146 -8 1010 283 134 27 chr6 9312 9764 -182405478 - L2 LINE L2 -244 3069 2533 241 192 0 0 chr6 10423 10475 -182404767 + L1MC4 LINE L1 6652 6703 -1339 * 252 167 45 0 chr6 10433 10499 -182404743 - L1MCa LINE L1 -4363 2063 1995 2660 67 15 0 chr6 10525 10866 -182404376 - L1PA7 LINE L1 -4 6150 5805 2915 62 11 0 chr6 10866 11238 -182404004 + L1PA7 LINE L1 5415 5790 -364 3746 178 6 1 chr6 11349 12018 -182403224 - L1PA16 LINE L1 -4 6162 5491 438 224 32 45 chr6 12027 12183 -182403059 + L1MC5 LINE L1 5372 5525 -2283 7626 26 3 0 chr6 12188 13236 -182402006 - L1PA3 LINE L1 0 6155 5105 15162 28 0 0 chr6 13238 15038 -182400204 + L1PA3 LINE L1 3311 5110 -1036 878 234 139 28 chr6 15033 15233 -182400009 + L1MC5 LINE L1 5512 5688 -2120 * 2223 129 0 0 chr6 15233 15543 -182399699 + AluSx SINE Alu 1 310 -2 878 234 139 28 chr6 15543 15730 -182399512 + L1MC5 LINE L1 5688 5942 -1866 21 57 0 0 chr6 15746 15781 -182399461 + AT_rich Low_complexity Low_complexity 1 35 0 445 254 51 30 chr6 16284 16579 -182398663 + L1MC5 LINE L1 7346 7646 -315 259 77 19 58 chr6 16575 16627 -182398615 + L1M2 LINE L1 2829 2878 -3971 * 791 197 0 0 chr6 16629 16771 -182398471 + FLAM_C SINE Alu 1 142 -1 22 0 0 0 chr6 16776 16798 -182398444 + AT_rich Low_complexity Low_complexity 1 22 0 1632 222 23 21 chr6 16801 17234 -182398008 + L1 LINE L1 2863 3296 -3552 943 310 51 66 chr6 17239 18194 -182397048 + L1PA12 LINE L1 950 1890 -5691 * 3393 204 8 3 chr6 18192 18973 -182396269 + L1 LINE L1 4523 5308 -843 1034 218 18 65 chr6 19050 19143 -182396099 + Tigger5 DNA MER2_type 1 97 -2226 2278 79 3 7 chr6 19143 19435 -182395807 + AluSc SINE Alu 5 295 -14 1034 218 18 65 chr6 19435 19570 -182395672 + Tigger5 DNA MER2_type 97 218 -2105 * 2097 200 70 8 chr6 19561 20030 -182395212 + Tigger5 DNA MER2_type 1826 2323 0 277 255 112 53 chr6 20032 20487 -182394755 + L1M4 LINE L1 2969 3450 -2696 3459 212 98 64 chr6 20910 22073 -182393169 + L1M4 LINE L1 830 1952 -4692 1100 79 22 11 chr6 22073 22251 -182392991 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3459 212 98 64 chr6 22251 23923 -182391319 + L1M4 LINE L1 1952 3752 -2892 849 247 44 8 chr6 23923 24220 -182391022 + L1M4 LINE L1 5336 5637 -1007 576 269 37 103 chr6 24253 24826 -182390416 + L1MC4a LINE L1 6049 6583 -1225 207 222 42 14 chr6 24870 24942 -182390300 + (TA)n Simple_repeat Simple_repeat 2 75 0 411 303 61 19 chr6 25042 25306 -182389936 + L1MC5 LINE L1 7251 7525 -436 254 236 45 64 chr6 25418 25528 -182389714 + L1ME3 LINE L1 5979 6086 -76 23 65 0 16 chr6 26179 26212 -182389030 + AT_rich Low_complexity Low_complexity 1 34 -27 389 43 0 0 chr6 26212 26259 -182388983 - L1PA6 LINE L1 -8 6146 6100 23 65 0 16 chr6 26259 26287 -182388955 + AT_rich Low_complexity Low_complexity 34 61 0 376 364 103 23 chr6 27200 27502 -182387740 - L2 LINE L2 -23 3249 2924 25 31 0 0 chr6 27610 27642 -182387600 + AT_rich Low_complexity Low_complexity 1 32 0 2143 45 15 0 chr6 27702 27968 -182387274 - L1PA5 LINE L1 -4 6150 5881 326 380 60 26 chr6 27971 28205 -182387037 - L2 LINE L2 -606 2708 2467 722 190 92 6 chr6 28454 28617 -182386625 + AluSp SINE Alu 123 299 -14 823 297 60 39 chr6 28793 29228 -182386014 - L1ME3A LINE L1 -219 5951 5508 186 43 0 0 chr6 29263 29286 -182385956 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3987 207 28 31 chr6 29286 30300 -182384942 - L1 LINE L1 -1449 4697 3687 1187 281 69 32 chr6 30350 31091 -182384151 - L1ME3A LINE L1 -2027 4119 3352 7089 154 30 11 chr6 31125 31256 -182383986 - L1MA8 LINE L1 -53 6238 6111 4867 107 18 1 chr6 31256 31985 -182383257 + L1MA2 LINE L1 5556 6303 -1 7089 154 30 11 chr6 31985 33967 -182381275 - L1MA8 LINE L1 -180 6111 4083 1790 214 76 15 chr6 34121 34597 -182380645 + LTR22 LTR ERVK 1 505 -4 6340 181 2 7 chr6 34637 35671 -182379571 + L1PA15-16 LINE L1 2 1030 -5819 2686 111 24 0 chr6 35671 36084 -182379158 + L1P4 LINE L1 5268 5690 -478 2105 128 0 0 chr6 36086 36376 -182378866 + AluSq SINE Alu 1 290 -23 260 183 21 54 chr6 36389 36482 -182378760 + L1MC4 LINE L1 6614 6703 -1339 2349 122 16 14 chr6 36507 36978 -182378264 + L1PA8 LINE L1 5648 6077 -77 345 198 83 10 chr6 36957 37053 -182378189 + L1PA8 LINE L1 5946 6048 -124 * 349 214 61 10 chr6 37032 37130 -182378112 + L1PA8 LINE L1 5946 6048 -124 * 364 204 61 10 chr6 37109 37207 -182378035 + L1PA8 LINE L1 5946 6048 -124 342 214 61 10 chr6 37186 37284 -182377958 + L1PA8 LINE L1 5946 6048 -124 * 335 214 71 10 chr6 37263 37361 -182377881 + L1PA8 LINE L1 5946 6049 -123 * 331 236 61 10 chr6 37339 37513 -182377729 + L1PA8 LINE L1 5927 6048 -124 * 329 182 78 0 chr6 37492 37569 -182377673 + L1PA8 LINE L1 5946 6028 -144 * 1329 134 28 0 chr6 37569 37785 -182377457 + L1PA10 LINE L1 5946 6167 -1 538 238 85 75 chr6 37810 38247 -182376995 - L1MEd LINE L1 -4971 1148 708 309 261 23 11 chr6 38254 38342 -182376900 + GA-rich Low_complexity Low_complexity 3 91 0 767 51 0 0 chr6 38428 38526 -182376716 + L1PA5 LINE L1 6055 6152 -2 3030 205 73 11 chr6 38973 39803 -182375439 + L1 LINE L1 2939 3820 -2326 448 273 86 0 chr6 39810 39949 -182375293 + ERVL LTR ERVL 1690 1840 -3924 1779 224 33 0 chr6 39962 40421 -182374821 + L1MA7 LINE L1 3179 3652 -2494 6090 26 1 0 chr6 40437 41158 -182374084 - L1PA4 LINE L1 -180 5975 5254 1409 51 6 0 chr6 41158 41336 -182373906 + L1PA4 LINE L1 5977 6155 0 5100 160 34 33 chr6 41355 42439 -182372803 + L1MA7 LINE L1 3663 4747 -1399 31748 103 16 58 chr6 43613 50033 -182365209 + L1PA7 LINE L1 12 6153 -1 5044 154 48 12 chr6 50781 52286 -182362956 + L1MA7 LINE L1 4736 6287 -4 303 246 40 16 chr6 52561 52687 -182362555 + L1M4 LINE L1 3559 3687 -2459 * 1034 236 112 32 chr6 52670 53226 -182362016 + L1M4 LINE L1 3913 4512 -1634 403 311 68 15 chr6 56169 56301 -182358941 - MIR3 SINE MIR -40 168 30 347 347 7 20 chr6 58278 58428 -182356814 + MIR SINE MIR 1 148 -114 250 184 0 0 chr6 58436 58485 -182356757 + L1MA4 LINE L1 6055 6103 -197 1303 150 4 4 chr6 58501 58748 -182356494 + L1MA4 LINE L1 6049 6295 -5 275 234 36 117 chr6 58797 58934 -182356308 + MIR SINE MIR 136 261 -1 500 191 0 0 chr6 59780 59864 -182355378 + AluS SINE Alu 1 84 -228 180 132 0 113 chr6 61065 61118 -182354124 + L2 LINE L2 3267 3313 0 34 42 0 0 chr6 63309 63357 -182351885 + AT_rich Low_complexity Low_complexity 1 48 0 730 131 0 83 chr6 64026 64171 -182351071 + FLAM_C SINE Alu 1 133 0 227 275 87 47 chr6 64242 64391 -182350851 + HAL1b LINE L1 742 896 -452 453 307 170 37 chr6 64706 65400 -182349842 - L2 LINE L2 0 3313 2485 564 296 169 22 chr6 65414 65681 -182349561 + L2 LINE L2 900 1205 -2109 1139 280 51 42 chr6 65896 66137 -182349105 + MLT1H1 LTR MaLR 1 238 -317 1829 168 42 25 chr6 66137 66495 -182348747 - THE1B LTR MaLR 0 364 1 11090 105 18 8 chr6 66495 68059 -182347183 - THE1B-int LTR MaLR 0 1580 1 1973 147 39 33 chr6 68059 68419 -182346823 - THE1B LTR MaLR 0 364 3 1139 280 51 42 chr6 68419 68700 -182346542 + MLT1H1 LTR MaLR 237 530 -25 247 250 10 62 chr6 68700 68796 -182346446 + MLT1H1-int LTR MaLR 7 97 -1274 749 167 74 6 chr6 69099 69261 -182345981 - LTR64 LTR ERVK 0 558 386 2386 94 52 0 chr6 69263 69625 -182345617 + L1PA14 LINE L1 5781 6161 0 2255 106 0 3 chr6 69762 70064 -182345178 + AluSq SINE Alu 1 301 -12 192 222 111 0 chr6 70579 70633 -182344609 + L2 LINE L2 3254 3313 0 577 325 94 48 chr6 70724 71262 -182343980 + L2 LINE L2 2716 3271 -1 789 342 33 25 chr6 72383 72778 -182342464 + MLT1E LTR MaLR 22 419 -174 527 303 92 43 chr6 72879 73344 -182341898 + L1MEd LINE L1 347 834 -5285 283 233 194 0 chr6 74018 74121 -182341121 - L2 LINE L2 -871 2443 2321 228 255 57 38 chr6 74511 74617 -182340625 + MER65B LTR ERV1 262 369 -162 315 324 40 7 chr6 74737 74885 -182340357 - L1M4 LINE L1 -2470 3676 3524 1207 289 70 13 chr6 75049 75708 -182339534 + L2 LINE L2 2616 3309 -4 490 223 16 31 chr6 75708 75901 -182339341 + L1 LINE L1 3794 3983 -2163 430 278 155 63 chr6 75901 76284 -182338958 + L1 LINE L1 4508 4925 -1221 1710 224 37 26 chr6 76287 76777 -182338465 + MLT1D LTR MaLR 1 495 -10 226 172 92 69 chr6 76778 76865 -182338377 + L1 LINE L1 4924 5012 -1134 846 284 76 29 chr6 77059 77717 -182337525 + L1ME3A LINE L1 5259 5947 -223 203 286 12 12 chr6 78071 78155 -182337087 + (TA)n Simple_repeat Simple_repeat 1 84 0 2166 123 29 45 chr6 78243 78624 -182336618 - THE1C LTR MaLR 0 375 1 419 56 112 0 chr6 79647 79790 -182335452 + (TA)n Simple_repeat Simple_repeat 2 160 0 2495 57 0 0 chr6 79924 80220 -182335022 - AluY SINE Alu -15 296 1 39 68 0 0 chr6 80292 80366 -182334876 + AT_rich Low_complexity Low_complexity 1 74 0 245 164 0 18 chr6 81729 81784 -182333458 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 518 146 0 0 chr6 81823 81919 -182333323 + L1MA5 LINE L1 6200 6295 -5 191 146 24 0 chr6 82062 82103 -182333139 + (TA)n Simple_repeat Simple_repeat 1 42 0 523 257 0 9 chr6 82378 82491 -182332751 + L2 LINE L2 3197 3308 -5 506 382 40 23 chr6 82502 83053 -182332189 + L2 LINE L2 2710 3270 -2 1953 167 13 0 chr6 83216 83516 -182331726 + AluJb SINE Alu 1 304 -8 679 202 21 5 chr6 84689 84877 -182330365 + L1MA4A LINE L1 6112 6302 -1 1291 205 39 35 chr6 84879 85637 -182329605 + L1M4c LINE L1 1451 2302 -4082 21 36 0 0 chr6 85771 85799 -182329443 + AT_rich Low_complexity Low_complexity 1 28 0 369 242 158 33 chr6 86186 86306 -182328936 - L2 LINE L2 -1 3312 3178 1992 130 0 0 chr6 86420 86690 -182328552 - AluSx SINE Alu -42 270 1 285 261 39 78 chr6 87131 87236 -182328006 - L2 LINE L2 -5 3308 3209 2343 107 0 0 chr6 87236 87544 -182327698 - AluSq SINE Alu -5 308 1 285 261 39 78 chr6 87544 87591 -182327651 - L2 LINE L2 -104 3209 3162 1837 113 3 65 chr6 88031 88324 -182326918 - AluSx SINE Alu -1 311 37 716 119 0 18 chr6 88326 88435 -182326807 - FLAM_C SINE Alu -8 135 29 688 158 0 0 chr6 88439 88540 -182326702 + FLAM_C SINE Alu 3 103 -40 874 206 25 0 chr6 88541 88647 -182326595 + L1M3f LINE L1 1123 1225 -5104 2247 100 3 23 chr6 88647 88956 -182326286 + AluSg SINE Alu 1 303 -7 874 206 25 0 chr6 88956 89392 -182325850 + L1M3f LINE L1 1225 2091 -4238 444 150 13 8 chr6 89407 89642 -182325600 + AluSq SINE Alu 1 313 0 2193 109 0 0 chr6 92723 93026 -182322216 - AluSg SINE Alu -7 303 1 1664 181 0 7 chr6 94413 94711 -182320531 - AluJo SINE Alu -16 296 1 353 226 39 49 chr6 94822 94924 -182320318 + MER8 DNA MER2_type 3 103 -136 966 214 0 5 chr6 94924 95111 -182320131 + AluJb SINE Alu 117 302 -10 1183 49 3 38 chr6 95129 95480 -182319762 + (CCCTAA)n Simple_repeat Simple_repeat 1 338 0 801 177 38 16 chr6 95480 95666 -182319576 - TAR1 Satellite telomeric -237 1874 1685 4157 158 28 13 chr6 95685 96859 -182318383 - TAR1 Satellite telomeric -1350 1191 1 891 187 64 132 chr6 96706 97176 -182318066 - LTR60 LTR ERV1 -43 543 106 * 478 217 9 0 chr6 97212 97318 -182317924 - LTR60 LTR ERV1 -479 107 1 1019 227 85 26 chr6 97334 97946 -182317296 + L1MC/D LINE L1 4898 5546 -745 2703 155 46 16 chr6 97957 98517 -182316725 + MER34C LTR ERV1 7 583 -2 518 266 16 11 chr6 98522 98710 -182316532 + L1MC/D LINE L1 5577 5765 -2020 583 143 10 0 chr6 98923 99021 -182316221 + MER72 LTR ERV1 1 99 -623 208 129 32 48 chr6 100933 100995 -182314247 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 193 57 57 0 chr6 101181 101216 -182314026 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 798 276 18 5 chr6 101344 101565 -182313677 + MER58A DNA MER1_type 1 224 0 330 285 124 32 chr6 102263 102449 -182312793 + MIR SINE MIR 54 256 -6 216 0 0 0 chr6 103072 103096 -182312146 + (T)n Simple_repeat Simple_repeat 1 24 0 204 184 0 0 chr6 103978 104027 -182311215 + CT-rich Low_complexity Low_complexity 2 50 0 180 204 102 0 chr6 104880 104929 -182310313 - L2 LINE L2 -71 3201 3148 16323 76 11 5 chr6 106361 107478 -182307764 + L1PA7 LINE L1 3133 4242 -1912 2366 78 0 0 chr6 107478 107786 -182307456 + AluY SINE Alu 1 308 -3 16323 76 11 5 chr6 107786 109586 -182305656 + L1PA7 LINE L1 4242 6059 -95 757 155 88 52 chr6 109576 109770 -182305472 - L1 LINE L1 -1835 4311 4111 * 2102 171 100 23 chr6 109772 109816 -182305426 + L1MB2 LINE L1 5653 5692 -479 2094 95 14 3 chr6 109816 110111 -182305131 - AluY SINE Alu -13 298 1 2102 171 100 23 chr6 110111 110546 -182304696 + L1MB2 LINE L1 5692 6169 -2 364 317 57 0 chr6 110546 110669 -182304573 + L1M4 LINE L1 2336 2465 -3681 5798 95 44 10 chr6 110672 111515 -182303727 + L1PB1 LINE L1 5231 6105 -46 1967 88 74 0 chr6 111515 111798 -182303444 + AluY SINE Alu 1 304 -7 5798 95 44 10 chr6 111798 111846 -182303396 + L1PB1 LINE L1 6105 6150 -1 437 253 43 56 chr6 112572 112734 -182302508 + MIR SINE MIR 67 226 -36 719 220 84 5 chr6 112758 112949 -182302293 + MER46C DNA MER2_type 1 206 -132 1018 174 12 0 chr6 113265 113432 -182301810 - FAM SINE Alu -5 170 2 2279 84 0 3 chr6 113943 114252 -182300990 + AluY SINE Alu 1 308 -3 2000 98 0 69 chr6 114469 114787 -182300455 + AluSg SINE Alu 1 296 -14 2132 124 0 0 chr6 115670 115976 -182299266 + AluSg SINE Alu 1 306 -4 364 208 66 9 chr6 115987 116093 -182299149 + L1MA9 LINE L1 6164 6275 -37 224 54 54 0 chr6 116096 116133 -182299109 + A-rich Low_complexity Low_complexity 3 41 0 21 0 0 0 chr6 117677 117698 -182297544 + AT_rich Low_complexity Low_complexity 1 21 0 797 166 0 22 chr6 118569 118708 -182296534 + AluJo SINE Alu 2 137 -175 881 190 6 11 chr6 118740 118919 -182296323 + AluJo SINE Alu 118 295 -17 2059 157 6 28 chr6 118945 119308 -182295934 + THE1A LTR MaLR 1 355 0 11184 110 16 3 chr6 119308 120868 -182294374 + THE1B-int LTR MaLR 1 1580 0 2100 139 45 31 chr6 120868 121227 -182294015 + THE1B LTR MaLR 1 364 0 1499 181 44 0 chr6 121329 121644 -182293598 + L1M1 LINE L1 4808 5136 -1010 2140 197 75 8 chr6 121647 122125 -182293117 + L1M1 LINE L1 5255 5764 -536 2003 101 4 4 chr6 122602 122878 -182292364 + AluSp SINE Alu 1 276 -37 429 83 28 0 chr6 122878 122950 -182292292 + AluSp/q SINE Alu 238 311 -2 303 261 65 94 chr6 123006 123144 -182292098 - HAL1b LINE L1 -546 802 669 226 153 71 24 chr6 123322 123407 -182291835 + (TTAA)n Simple_repeat Simple_repeat 1 89 0 367 295 86 43 chr6 123545 123684 -182291558 - HAL1b LINE L1 -884 464 320 1970 127 0 3 chr6 123701 123992 -182291250 + AluSq SINE Alu 1 290 -23 2265 96 0 0 chr6 124563 124864 -182290378 + AluSg SINE Alu 1 301 -9 2007 130 3 3 chr6 124931 125238 -182290004 - AluSx SINE Alu -5 307 1 4661 163 86 121 chr6 125267 126069 -182289173 + pTR5 LTR ERV1 5 4294966559 -1451 5286 84 98 7 chr6 126069 126826 -182288416 - LTR12 LTR ERV1 0 826 1 4661 163 86 121 chr6 126826 128201 -182287041 + pTR5 LTR ERV1 -738 682 -32 183 310 35 58 chr6 128283 128370 -182286872 - L3 LINE CR1 -59 1518 1434 2309 72 3 3 chr6 129532 129836 -182285406 + AluSp SINE Alu 1 304 -9 278 253 181 0 chr6 130424 130507 -182284735 + L3 LINE CR1 1356 1453 -124 402 305 222 11 chr6 132549 132828 -182282414 + L1ME4a LINE L1 5721 6058 -63 625 251 98 46 chr6 132841 133184 -182282058 + LTR40c LTR ERVL 27 438 -24 749 207 22 137 chr6 133233 133503 -182281739 - MER8 DNA MER2_type 0 239 1 303 347 65 6 chr6 134009 134179 -182281063 - MIR SINE MIR -82 180 1 2250 60 0 23 chr6 135812 136112 -182279130 - AluY SINE Alu -18 293 1 241 357 51 0 chr6 136136 136234 -182279008 - L2 LINE L2 -38 3234 3132 1276 208 46 74 chr6 137765 138159 -182277083 - MLT1B LTR MaLR -7 383 1 662 191 121 0 chr6 139711 139868 -182275374 - MER45A DNA AcHobo 0 178 3 2029 108 7 3 chr6 140245 140542 -182274700 + AluSc SINE Alu 1 298 -11 598 88 7 51 chr6 140792 140929 -182274313 + (TG)n Simple_repeat Simple_repeat 2 132 0 768 274 91 4 chr6 140984 141214 -182274028 + MIR SINE MIR 2 251 -11 2273 98 0 0 chr6 142045 142342 -182272900 + AluSx SINE Alu 1 297 -15 1277 246 20 6 chr6 142698 143048 -182272194 + L1MB3 LINE L1 4697 5051 -1095 377 236 0 124 chr6 143851 144012 -182271230 + L2 LINE L2 3173 3313 0 928 159 0 14 chr6 144025 144383 -182270859 + (TGGA)n Simple_repeat Simple_repeat 4 354 0 2032 136 0 0 chr6 144458 144752 -182270490 - AluSx SINE Alu -18 294 1 2121 121 0 0 chr6 145333 145631 -182269611 + AluSq SINE Alu 13 310 -3 2171 105 16 0 chr6 146211 146515 -182268727 + AluSc SINE Alu 1 309 0 2174 86 7 10 chr6 146761 147052 -182268190 + AluSx SINE Alu 1 290 -22 1622 153 67 0 chr6 148243 148525 -182266717 - AluSx SINE Alu -11 301 1 2075 113 3 10 chr6 148643 148945 -182266297 - AluSc SINE Alu -9 300 1 2126 172 21 23 chr6 149583 149972 -182265270 - LTR45B LTR ERV1 -98 391 4 319 251 46 0 chr6 149977 150109 -182265133 + L1MB3 LINE L1 5337 5479 -691 1301 209 116 15 chr6 150179 150575 -182264667 + L1MD2 LINE L1 5693 6131 -228 357 202 46 55 chr6 150654 150763 -182264479 + MER5A DNA MER1_type 82 189 0 204 272 67 77 chr6 151095 151290 -182263952 + L2 LINE L2 2252 2444 -870 220 216 27 95 chr6 151597 151671 -182263571 + L2 LINE L2 3201 3269 -3 699 150 9 0 chr6 152000 152124 -182263118 - MER46A DNA MER2_type -5 221 107 837 198 77 0 chr6 152439 152621 -182262621 + MER20 DNA MER1_type 3 198 -21 343 232 84 84 chr6 154079 154234 -182261008 - L1MCa LINE L1 -4342 2084 1930 260 223 27 115 chr6 154526 154546 -182260696 - L2 LINE L2 0 3272 3252 1101 190 68 0 chr6 154546 154767 -182260475 + MER46A DNA MER2_type 1 236 0 260 223 27 115 chr6 154767 154894 -182260348 - L2 LINE L2 -20 3252 3138 * 281 179 0 75 chr6 154887 154954 -182260288 + MIR3 SINE MIR 94 155 -53 1906 138 3 20 chr6 155106 155410 -182259832 - AluSx SINE Alu -13 299 1 2068 116 0 0 chr6 155447 155755 -182259487 + AluSx SINE Alu 1 308 0 244 258 32 0 chr6 156171 156233 -182259009 - MIR SINE MIR -117 145 82 214 208 42 0 chr6 156886 156934 -182258308 + MIR SINE MIR 117 166 -96 283 205 26 51 chr6 159406 159484 -182255758 - L1MC4 LINE L1 -182 7860 7785 2747 200 48 2 chr6 159752 160353 -182254889 + L1MB3 LINE L1 5546 6174 -9 2150 88 7 17 chr6 160353 160649 -182254593 - AluSq SINE Alu -20 293 1 4094 174 88 3 chr6 161188 161948 -182253294 + LTR1B LTR ERV1 2 826 0 482 316 11 27 chr6 162572 162759 -182252483 + MIR SINE MIR 78 261 -1 492 296 106 22 chr6 163353 163579 -182251663 - MIR SINE MIR -1 261 17 2218 97 3 0 chr6 163769 164069 -182251173 - AluSq SINE Alu -12 301 1 228 222 0 0 chr6 164175 164220 -182251022 + MER5A DNA MER1_type 145 189 0 236 164 36 0 chr6 164327 164382 -182250860 + (TA)n Simple_repeat Simple_repeat 2 58 0 345 317 80 30 chr6 165219 165418 -182249824 + MIR SINE MIR 34 242 -20 297 268 110 47 chr6 165508 165635 -182249607 + L2 LINE L2 3122 3256 -16 191 281 61 0 chr6 165880 165962 -182249280 + MIR SINE MIR 23 109 -153 542 218 58 13 chr6 167149 167305 -182247937 - MIR3 SINE MIR -10 198 36 327 252 59 34 chr6 167774 167893 -182247349 - L1M4 LINE L1 -1618 4528 4407 673 243 93 4 chr6 167901 168148 -182247094 - L1MC4 LINE L1 -6 8036 7768 2129 153 19 48 chr6 169498 169910 -182245332 - MER57A LTR ERV1 -3 400 1 2441 202 50 47 chr6 171181 171781 -182243461 - MER7C DNA MER2_type 0 602 1 428 290 32 9 chr6 172292 172438 -182242804 + MER5B DNA MER1_type 32 174 -4 367 281 92 12 chr6 172438 172602 -182242640 + MLT1L LTR MaLR 144 320 -295 196 288 72 39 chr6 173226 173350 -182241892 + MIR3 SINE MIR 51 179 -54 1219 280 77 70 chr6 174280 174920 -182240322 - MER21B LTR ERV1 -196 667 24 270 257 257 0 chr6 175271 175419 -182239823 - MLT1L LTR MaLR -17 598 413 201 304 14 0 chr6 175797 175866 -182239376 + GA-rich Low_complexity Low_complexity 4 73 0 1994 103 46 0 chr6 176010 176292 -182238950 - AluSq SINE Alu -17 296 2 25 0 0 0 chr6 176317 176342 -182238900 + AT_rich Low_complexity Low_complexity 1 25 0 324 274 0 42 chr6 177366 177461 -182237781 + L1MC4 LINE L1 6614 6704 -1338 * 462 322 132 60 chr6 177386 177647 -182237595 - L1MC4a LINE L1 -1834 5974 5733 432 97 0 0 chr6 177647 177709 -182237533 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 462 322 132 60 chr6 177709 178112 -182237130 - L1MC4a LINE L1 -2075 5733 5262 2367 56 0 7 chr6 178566 178872 -182236370 - AluY SINE Alu -7 304 1 286 337 131 29 chr6 179430 179605 -182235637 - MIR3 SINE MIR -7 201 9 3824 90 13 26 chr6 179668 180202 -182235040 - MER1A DNA MER1_type 0 527 1 209 297 62 0 chr6 180435 180499 -182234743 - MIR SINE MIR -74 188 121 1357 205 160 18 chr6 180499 180899 -182234343 + MLT1C LTR MaLR 4 460 -7 200 302 40 79 chr6 180899 181025 -182234217 - MIR3 SINE MIR -73 135 15 200 128 0 26 chr6 181277 181316 -182233926 + (TAA)n Simple_repeat Simple_repeat 1 38 0 2130 115 3 0 chr6 181352 181657 -182233585 - AluSg SINE Alu -4 306 1 2067 103 0 7 chr6 181691 181973 -182233269 + AluSg SINE Alu 1 280 -30 189 259 52 0 chr6 182044 182102 -182233140 - MIR SINE MIR -122 140 80 2145 131 0 0 chr6 182700 183012 -182232230 - AluSx SINE Alu 0 312 1 665 169 0 25 chr6 183221 183381 -182231861 + GA-rich Low_complexity Low_complexity 2 157 0 308 62 0 21 chr6 183489 183537 -182231705 + (TCTCCC)n Simple_repeat Simple_repeat 1 47 0 350 281 0 0 chr6 183539 183635 -182231607 + CT-rich Low_complexity Low_complexity 1 96 0 506 291 62 39 chr6 184670 185027 -182230215 + L1ME4a LINE L1 5523 5887 -234 2296 72 3 0 chr6 185028 185321 -182229921 - AluSq SINE Alu -19 294 1 926 141 224 0 chr6 186100 186292 -182228950 - L1MA4A LINE L1 -6 6297 6063 1740 122 44 7 chr6 186305 186575 -182228667 + AluSx SINE Alu 30 309 -3 508 273 130 19 chr6 187530 187684 -182227558 - MIR3 SINE MIR -7 201 31 467 226 63 95 chr6 188226 188395 -182226847 + ORSL DNA AcHobo 28 188 -87 2319 75 3 3 chr6 188395 188701 -182226541 - AluSp SINE Alu -7 306 1 467 226 63 95 chr6 188701 188783 -182226459 + ORSL DNA AcHobo 188 271 -4 183 297 203 0 chr6 188848 188922 -182226320 + MIR SINE MIR 118 206 -56 468 159 0 0 chr6 189459 189528 -182225714 + Tigger2 DNA MER2_type 1 69 -2649 * 2332 104 28 11 chr6 189526 189882 -182225360 + Tigger2 DNA MER2_type 2280 2641 -77 10661 134 8 5 chr6 189882 192638 -182222604 + L1MA3 LINE L1 3540 6305 0 443 224 24 0 chr6 192658 192743 -182222499 + Tigger2 DNA MER2_type 2632 2718 0 975 204 91 18 chr6 192791 193065 -182222177 + LTR37A LTR ERV1 98 391 -35 337 195 39 0 chr6 193354 193431 -182221811 - MER116 DNA Mariner 0 80 1 1607 111 0 0 chr6 194261 194486 -182220756 + AluSg/x SINE Alu 88 312 0 6363 196 39 54 chr6 194752 195443 -182219799 - L1MB7 LINE L1 0 6184 5484 2059 90 32 0 chr6 195443 195722 -182219520 - AluSg SINE Alu -22 288 1 6363 196 39 54 chr6 195722 196449 -182218793 - L1MB7 LINE L1 -700 5484 4748 4120 102 17 107 chr6 196449 196773 -182218469 - L1MA3 LINE L1 0 6305 6090 2222 97 0 3 chr6 196773 197071 -182218171 - AluSx SINE Alu -11 301 5 4120 102 17 107 chr6 197071 197519 -182217723 - L1MA3 LINE L1 -215 6090 5603 6363 196 39 54 chr6 197519 198739 -182216503 - L1MB7 LINE L1 -1436 4748 3584 2286 85 3 0 chr6 198739 199034 -182216208 + AluSp SINE Alu 3 298 -15 6363 196 39 54 chr6 199034 199174 -182216068 - L1MB7 LINE L1 -2600 3584 3443 2196 101 0 0 chr6 200967 201263 -182213979 - AluSx SINE Alu -16 296 1 492 267 23 80 chr6 201923 202071 -182213171 + MIR3 SINE MIR 16 154 -54 1424 177 83 3 chr6 202071 202359 -182212883 - AluJo SINE Alu -1 311 1 492 267 23 80 chr6 202359 202386 -182212856 + MIR3 SINE MIR 154 181 -27 189 333 0 25 chr6 203581 203662 -182211580 - MIR3 SINE MIR -7 201 123 2213 110 3 3 chr6 203957 204258 -182210984 - AluSx SINE Alu -11 301 1 24 32 0 0 chr6 204321 204352 -182210890 + AT_rich Low_complexity Low_complexity 1 31 0 1877 128 56 36 chr6 205837 206174 -182209068 - L1PA16 LINE L1 -9 6157 5814 1382 179 0 21 chr6 206200 206434 -182208808 - AluJo SINE Alu -83 229 1 877 125 0 0 chr6 206438 206566 -182208676 - L1PA16 LINE L1 -341 5825 5698 306 218 90 0 chr6 206913 206991 -182208251 - L2 LINE L2 -4 3309 3225 1476 99 54 14 chr6 207093 207314 -182207928 - MER30 DNA MER1_type 0 230 1 9546 209 47 27 chr6 207625 208747 -182206495 - L1MB4 LINE L1 -1 6179 5080 1597 164 70 10 chr6 208747 209046 -182206196 - L1MC1 LINE L1 -1 6332 6016 9546 209 47 27 chr6 209046 209226 -182206016 - L1MB4 LINE L1 -1100 5080 4905 2314 89 0 4 chr6 209226 209567 -182205675 + AluY SINE Alu 3 342 0 9546 209 47 27 chr6 209567 211199 -182204043 - L1MB4 LINE L1 -1275 4905 3306 2262 115 0 0 chr6 211199 211494 -182203748 - AluSc SINE Alu -14 295 1 9546 209 47 27 chr6 211494 211658 -182203584 - L1MB4 LINE L1 -2874 3306 3147 2220 102 0 0 chr6 211658 211968 -182203274 + AluSx SINE Alu 1 310 0 9546 209 47 27 chr6 211968 212540 -182202702 - L1MB4 LINE L1 -3033 3147 2424 21 0 0 0 chr6 212716 212737 -182202505 + AT_rich Low_complexity Low_complexity 1 21 0 1643 243 98 22 chr6 213649 214330 -182200912 + L1ME2 LINE L1 5214 5953 -211 1902 148 7 20 chr6 214348 214651 -182200591 + AluSx SINE Alu 1 299 -13 2497 189 54 69 chr6 214797 215320 -182199922 + L1MC3 LINE L1 6499 7011 -774 5029 28 0 0 chr6 215320 215892 -182199350 + L1PA3 LINE L1 5584 6155 0 2497 189 54 69 chr6 215892 216067 -182199175 + L1MC3 LINE L1 7011 7187 -598 * 8793 218 102 34 chr6 216064 217552 -182197690 - L1M3 LINE L1 -399 6020 4635 189 0 0 0 chr6 217552 217573 -182197669 + (TG)n Simple_repeat Simple_repeat 2 22 0 8793 218 102 34 chr6 217573 217688 -182197554 - L1M3 LINE L1 -1784 4635 4529 348 215 13 0 chr6 217688 217767 -182197475 + MLT1A2 LTR MaLR 1 80 -294 8793 218 102 34 chr6 217767 218246 -182196996 - L1M3 LINE L1 -1890 4529 4084 243 0 0 0 chr6 218246 218273 -182196969 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 8793 218 102 34 chr6 218273 218325 -182196917 - L1M3 LINE L1 -2335 4084 4037 2189 92 0 0 chr6 218325 218598 -182196644 - AluSx SINE Alu 0 312 40 8793 218 102 34 chr6 218598 220405 -182194837 - L1M3 LINE L1 -2382 4037 1716 1292 129 119 61 chr6 220405 220715 -182194527 - L1M3 LINE L1 -5052 1332 1005 223 146 42 0 chr6 220715 220763 -182194479 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 53 0 0 chr6 220886 220924 -182194318 + AT_rich Low_complexity Low_complexity 1 38 0 835 193 0 0 chr6 220924 221064 -182194178 - L1M3 LINE L1 -5709 675 536 690 215 0 20 chr6 221071 221220 -182194022 - L1M3 LINE L1 -6217 167 22 1107 221 108 65 chr6 221288 221561 -182193681 + MLT1E2 LTR MaLR 211 508 -118 2055 142 7 3 chr6 221561 221870 -182193372 - AluSx SINE Alu -2 310 1 1107 221 108 65 chr6 221870 221995 -182193247 + MLT1E2 LTR MaLR 508 626 0 24 53 0 0 chr6 222435 222473 -182192769 + AT_rich Low_complexity Low_complexity 1 38 0 381 306 95 18 chr6 222575 222797 -182192445 + MIR SINE MIR 7 245 -17 397 165 71 0 chr6 222972 223057 -182192185 - MLT1L LTR MaLR -2 613 523 3746 238 44 14 chr6 223066 224120 -182191122 - L1M4 LINE L1 -1480 4666 3582 356 134 149 0 chr6 224109 224176 -182191066 + L1MB4 LINE L1 5807 5883 -297 * 401 213 64 0 chr6 224189 224283 -182190959 - L1M4 LINE L1 -2553 3593 3494 1770 160 86 54 chr6 224319 224350 -182190892 - L1MB4 LINE L1 -21 6159 6130 2443 93 0 0 chr6 224350 224651 -182190591 - AluSx SINE Alu -11 301 1 1770 160 86 54 chr6 224651 225105 -182190137 - L1MB4 LINE L1 -50 6130 5645 400 186 41 21 chr6 225104 225201 -182190041 - L1MCc LINE L1 -5142 1281 1183 * 1215 229 92 19 chr6 225208 225632 -182189610 - L1MCc LINE L1 -5184 1239 785 802 144 86 0 chr6 225649 225823 -182189419 - MER53 DNA DNA 0 189 1 539 294 73 29 chr6 226333 226605 -182188637 - L1MCc LINE L1 -6086 337 54 926 180 77 0 chr6 227293 227487 -182187755 - MLT1B LTR MaLR -81 309 101 2542 81 0 0 chr6 227575 227882 -182187360 - AluY SINE Alu -4 307 1 288 348 52 40 chr6 228234 228582 -182186660 + L2 LINE L2 2305 2656 -658 298 267 200 13 chr6 228923 229073 -182186169 + MIR SINE MIR 29 206 -56 206 269 0 0 chr6 229100 229152 -182186090 - MIR SINE MIR -25 237 186 181 343 30 20 chr6 229130 229229 -182186013 + L2 LINE L2 2979 3078 -194 * 1427 186 93 21 chr6 229456 229790 -182185452 - MLT1B LTR MaLR -29 361 4 352 210 12 0 chr6 231575 231656 -182183586 + L2 LINE L2 3190 3271 -1 499 247 0 0 chr6 232327 232420 -182182822 + MER81 DNA DNA 2 94 -20 2160 121 0 3 chr6 233544 233841 -182181401 + AluSx SINE Alu 1 296 -16 29 0 0 0 chr6 233987 234016 -182181226 + AT_rich Low_complexity Low_complexity 1 29 0 300 20 61 0 chr6 235247 235296 -182179946 + (TC)n Simple_repeat Simple_repeat 2 53 0 218 297 99 0 chr6 235511 235622 -182179620 - L2 LINE L2 -10 3262 3141 842 219 31 0 chr6 236396 236556 -182178686 + MER20 DNA MER1_type 55 219 0 2349 88 0 0 chr6 237220 237515 -182177727 - AluSx SINE Alu -17 295 1 22 0 0 0 chr6 237521 237543 -182177699 + AT_rich Low_complexity Low_complexity 1 22 0 327 332 182 23 chr6 238453 238887 -182176355 - L2 LINE L2 0 3313 2811 267 247 111 0 chr6 238893 238974 -182176268 - L2 LINE L2 0 3313 3224 189 0 0 0 chr6 241288 241309 -182173933 + (T)n Simple_repeat Simple_repeat 1 21 0 199 288 0 0 chr6 241789 241848 -182173394 - L2 LINE L2 -9 3304 3246 1232 144 40 104 chr6 241912 242258 -182172984 - MER33 DNA MER1_type 0 324 1 1842 147 0 77 chr6 242984 243310 -182171932 + AluJb SINE Alu 1 301 -11 407 227 117 23 chr6 243799 243927 -182171315 - MIR SINE MIR -87 175 36 259 203 55 78 chr6 244307 244435 -182170807 + 7SK RNA RNA 1 125 -68 183 261 46 31 chr6 244664 244729 -182170513 - MIR3 SINE MIR -3 205 140 * 202 175 38 138 chr6 244716 244796 -182170446 + MIR SINE MIR 121 192 -70 851 215 75 5 chr6 244975 245175 -182170067 - MER20 DNA MER1_type -4 215 2 192 328 16 0 chr6 246298 246359 -182168883 - L2 LINE L2 -39 3233 3172 322 250 10 21 chr6 247575 247671 -182167571 + Charlie8 DNA MER1_type 25 119 -2298 330 254 296 14 chr6 248276 248489 -182166753 - LTR67 LTR ERVL -8 549 277 22 56 0 0 chr6 249402 249438 -182165804 + AT_rich Low_complexity Low_complexity 1 36 0 450 193 203 36 chr6 250237 250554 -182164688 - MER31B LTR ERV1 -8 477 4 183 258 61 15 chr6 251361 251427 -182163815 + MER5A DNA MER1_type 121 189 0 2367 170 22 5 chr6 252165 252611 -182162631 - L1MB3 LINE L1 -1 6182 5729 248 208 65 13 chr6 253711 253788 -182161454 - L1MB3 LINE L1 -467 5654 5574 193 284 25 37 chr6 254074 254155 -182161087 - L2 LINE L2 0 3313 3234 253 227 0 41 chr6 254759 254856 -182160386 + CT-rich Low_complexity Low_complexity 3 95 0 184 214 24 0 chr6 255652 255694 -182159548 - MER5A DNA MER1_type -143 46 4 523 239 22 0 chr6 256162 256296 -182158946 + L1MB7 LINE L1 6035 6171 -13 329 257 46 18 chr6 256722 256831 -182158411 - LTR56 LTR ERV1 -333 112 1 198 274 39 0 chr6 257062 257113 -182158129 + MER5A DNA MER1_type 42 94 -95 360 0 0 0 chr6 257171 257211 -182158031 + (CA)n Simple_repeat Simple_repeat 2 41 0 329 250 117 0 chr6 257296 257416 -182157826 - L1ME4a LINE L1 -175 5946 5813 2022 129 0 7 chr6 257425 257750 -182157492 - AluSx SINE Alu 0 312 1 23 0 0 0 chr6 258217 258240 -182157002 + AT_rich Low_complexity Low_complexity 1 23 0 863 247 109 31 chr6 258432 258845 -182156397 - LTR56 LTR ERV1 0 445 1 2683 36 0 0 chr6 258888 259192 -182156050 + AluY SINE Alu 1 304 -7 22 0 0 0 chr6 260453 260475 -182154767 + AT_rich Low_complexity Low_complexity 1 22 0 231 350 59 21 chr6 262799 262985 -182152257 - MIR3 SINE MIR -13 195 3 355 319 9 9 chr6 263017 263133 -182152109 - L1ME4a LINE L1 -513 5608 5493 225 246 101 14 chr6 263255 263324 -182151918 - L2 LINE L2 -4 3309 3235 208 250 2 50 chr6 263670 263754 -182151488 - MIR SINE MIR -133 75 10 414 324 48 2 chr6 266216 266467 -182148775 + L1MC4a LINE L1 5664 5817 -304 21 0 0 0 chr6 266625 266646 -182148596 + AT_rich Low_complexity Low_complexity 1 21 0 231 259 151 82 chr6 268372 268689 -182146553 - L2 LINE L2 -8 3264 2926 278 344 78 52 chr6 268776 269046 -182146196 - L2 LINE L2 -495 2819 2543 488 312 56 47 chr6 269063 269297 -182145945 + L1M4 LINE L1 2252 2487 -3659 283 265 15 0 chr6 269472 269540 -182145702 - L2 LINE L2 -1025 2289 2221 279 221 53 18 chr6 269548 269661 -182145581 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 300 53 0 0 chr6 270720 270758 -182144484 + (TG)n Simple_repeat Simple_repeat 2 39 0 224 217 14 72 chr6 275475 275544 -182139698 - MIR SINE MIR -7 255 191 236 314 108 0 chr6 275793 275895 -182139347 - MER58B DNA MER1_type -40 301 189 243 292 71 82 chr6 276571 276852 -182138390 - L2 LINE L2 -340 2974 2697 1151 155 52 44 chr6 278046 278263 -182136979 + L1MB3 LINE L1 5921 6142 -41 2265 99 7 3 chr6 278263 278555 -182136687 - AluSg SINE Alu -17 293 1 1151 155 52 44 chr6 278555 278589 -182136653 + L1MB3 LINE L1 6142 6174 -9 226 178 0 22 chr6 280911 280956 -182134286 - L2 LINE L2 -6 3266 3223 215 238 0 0 chr6 281431 281473 -182133769 + T-rich Low_complexity Low_complexity 2 43 0 1332 219 25 9 chr6 284309 284624 -182130618 - MER33 DNA MER1_type 0 324 5 226 229 84 48 chr6 286017 286100 -182129142 + MIR SINE MIR 57 142 -120 822 188 7 0 chr6 286442 286586 -182128656 - L1PB4 LINE L1 -12 6144 6000 257 220 250 20 chr6 288069 288169 -182127073 + MIR SINE MIR 90 212 -50 227 279 163 0 chr6 291303 291389 -182123853 + Charlie8 DNA MER1_type 4 103 -2314 267 306 0 0 chr6 292444 292516 -182122726 + (TG)n Simple_repeat Simple_repeat 1 72 0 1786 179 3 16 chr6 293084 293392 -182121850 - AluJb SINE Alu -8 304 1 221 340 70 10 chr6 293475 293575 -182121667 - MIR3 SINE MIR -94 114 9 1003 155 23 76 chr6 293999 294019 -182121223 + L1MA6 LINE L1 6051 6071 -229 2133 96 45 3 chr6 294019 294311 -182120931 - AluSx SINE Alu -8 304 1 1003 155 23 76 chr6 294311 294554 -182120688 + L1MA6 LINE L1 6071 6300 0 315 0 0 0 chr6 295231 295266 -182119976 + (CA)n Simple_repeat Simple_repeat 2 36 0 227 279 0 0 chr6 295304 295365 -182119877 + MIR SINE MIR 194 254 -8 252 339 24 42 chr6 295893 296061 -182119181 + MER5B DNA MER1_type 13 177 -1 472 298 7 0 chr6 298005 298156 -182117086 + (TG)n Simple_repeat Simple_repeat 1 152 0 1869 142 110 23 chr6 302018 302328 -182112914 + MER1B DNA MER1_type 1 337 0 206 321 74 60 chr6 302421 302636 -182112606 - L2 LINE L2 -212 3060 2843 2025 146 0 0 chr6 303701 303981 -182111261 - AluSx SINE Alu -32 280 1 2291 109 0 3 chr6 305164 305467 -182109775 + AluSq SINE Alu 1 302 -11 347 325 162 0 chr6 306534 306725 -182108517 - MIR SINE MIR -8 254 33 315 0 0 0 chr6 313587 313622 -182101620 + (T)n Simple_repeat Simple_repeat 1 35 0 1131 231 60 36 chr6 314113 314159 -182101083 - L1MB7 LINE L1 0 6184 6141 1929 91 4 0 chr6 314159 314401 -182100841 + AluSp SINE Alu 61 303 -10 1131 231 60 36 chr6 314401 314718 -182100524 - L1MB7 LINE L1 -43 6141 5812 728 200 92 0 chr6 314779 314974 -182100268 + MER20 DNA MER1_type 1 213 -6 426 338 12 12 chr6 316103 316263 -182098979 + (CA)n Simple_repeat Simple_repeat 1 160 0 214 246 17 39 chr6 316309 316488 -182098754 + (CATA)n Simple_repeat Simple_repeat 4 178 0 416 259 43 9 chr6 316590 316706 -182098536 - MIR SINE MIR -111 151 32 2123 117 0 0 chr6 317424 317714 -182097528 - AluSc SINE Alu -19 290 1 272 141 99 14 chr6 317976 318047 -182097195 - L1MA8 LINE L1 -6 6285 6209 * 835 181 18 0 chr6 318043 318214 -182097028 + L1MA8 LINE L1 6049 6222 -69 317 316 105 26 chr6 318836 319102 -182096140 - Charlie7 DNA MER1_type -1926 686 400 326 287 11 0 chr6 319775 319869 -182095373 + (TAG)n Simple_repeat Simple_repeat 2 96 0 456 237 0 0 chr6 319870 320043 -182095199 + (CAG)n Simple_repeat Simple_repeat 2 174 0 507 233 0 0 chr6 320057 320317 -182094925 + (CAG)n Simple_repeat Simple_repeat 1 260 0 471 248 0 0 chr6 320332 320659 -182094583 + (CAG)n Simple_repeat Simple_repeat 1 327 0 459 237 0 0 chr6 320674 320851 -182094391 + (CAG)n Simple_repeat Simple_repeat 2 178 0 462 245 0 0 chr6 320866 321160 -182094082 + (CAG)n Simple_repeat Simple_repeat 1 294 0 504 232 0 0 chr6 321175 321352 -182093890 + (CAG)n Simple_repeat Simple_repeat 2 178 0 495 235 0 0 chr6 321364 321645 -182093597 + (CAG)n Simple_repeat Simple_repeat 1 281 0 452 243 3 5 chr6 321670 322282 -182092960 + (CAG)n Simple_repeat Simple_repeat 1 611 0 291 256 128 0 chr6 322282 322368 -182092874 - MIR SINE MIR 0 262 166 327 264 72 1 chr6 322690 322863 -182092379 + L1MC3 LINE L1 6808 7026 -759 194 270 0 32 chr6 322904 322967 -182092275 + L2 LINE L2 3233 3293 -20 2200 254 89 7 chr6 324327 325025 -182090217 + L1MC4a LINE L1 6747 7501 -307 2484 82 0 22 chr6 325118 325434 -182089808 + AluSc SINE Alu 1 309 0 3640 171 56 8 chr6 325803 326540 -182088702 + L1MA8 LINE L1 5514 6285 -6 1846 111 53 4 chr6 327424 327686 -182087556 + AluSg SINE Alu 34 308 -2 468 301 127 9 chr6 328040 328253 -182086989 - L1ME4a LINE L1 -196 5925 5688 208 351 35 9 chr6 328379 328493 -182086749 - L2 LINE L2 0 3313 3197 635 281 22 17 chr6 334185 334416 -182080826 + HERV16 LTR ERVL 882 1113 -3883 786 127 19 38 chr6 335031 335189 -182080053 - MER53 DNA DNA -34 155 1 687 343 92 13 chr6 335295 335674 -182079568 + LTR16A LTR ERVL 17 425 -25 1737 239 73 14 chr6 335950 336468 -182078774 - MER44D DNA MER2_type -1 604 1 315 312 28 0 chr6 336720 336829 -182078413 + MLT1I LTR MaLR 124 235 -174 248 298 155 25 chr6 338370 338531 -182076711 - MIR SINE MIR -1 261 80 472 262 25 8 chr6 339710 339832 -182075410 + L2 LINE L2 3190 3313 0 1810 81 146 0 chr6 340343 340604 -182074638 - AluSx SINE Alu -13 299 1 22 0 0 0 chr6 341333 341355 -182073887 + GC_rich Low_complexity Low_complexity 1 22 0 201 188 47 16 chr6 341377 341441 -182073801 + (CCCCAG)n Simple_repeat Simple_repeat 1 66 0 21 0 0 0 chr6 342896 342917 -182072325 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 342975 343003 -182072239 + GC_rich Low_complexity Low_complexity 1 28 0 224 293 12 49 chr6 343302 343466 -182071776 + CT-rich Low_complexity Low_complexity 1 158 0 1352 165 99 51 chr6 344003 344276 -182070966 + AluJo SINE Alu 7 292 -20 432 329 7 7 chr6 344925 345062 -182070180 - MER5A DNA MER1_type -9 180 44 291 297 145 22 chr6 347903 348041 -182067201 + MIR3 SINE MIR 26 180 -28 24 53 0 0 chr6 348925 348963 -182066279 + AT_rich Low_complexity Low_complexity 1 38 0 539 245 111 67 chr6 350020 350235 -182065007 - L1ME4a LINE L1 -6 6115 5886 225 0 0 0 chr6 350235 350260 -182064982 + (CA)n Simple_repeat Simple_repeat 2 26 0 539 245 111 67 chr6 350260 350297 -182064945 - L1ME4a LINE L1 -235 5886 5852 350 305 32 7 chr6 350586 350740 -182064502 + MER103 DNA DNA 8 165 -1 2025 128 0 7 chr6 352191 352472 -182062770 + AluSx SINE Alu 1 279 -33 183 80 0 0 chr6 355202 355227 -182060015 + (TTAGGG)n Simple_repeat Simple_repeat 5 29 0 2454 90 0 0 chr6 355700 356001 -182059241 + AluSg SINE Alu 1 301 -9 23 0 0 0 chr6 356173 356196 -182059046 + AT_rich Low_complexity Low_complexity 1 23 0 1101 133 0 44 chr6 357057 357238 -182058004 - AluSg/x SINE Alu 0 312 140 206 225 0 0 chr6 358571 358611 -182056631 - L2 LINE L2 -4 3268 3229 22 35 0 0 chr6 358706 358735 -182056507 + AT_rich Low_complexity Low_complexity 1 29 0 261 193 174 73 chr6 361788 361897 -182053345 - MER34B LTR ERV1 -441 124 5 7918 187 52 43 chr6 361901 363901 -182051341 - MER34B-int LTR ERV1 0 6331 4314 2469 150 26 5 chr6 363901 364320 -182050922 + MSTA LTR MaLR 1 428 0 3142 141 33 2 chr6 364320 364839 -182050403 + MSTA-int LTR MaLR 1 535 -1116 345 190 40 30 chr6 364934 365034 -182050208 - MER34B-int LTR ERV1 -4937 1394 1294 353 237 36 82 chr6 365373 365567 -182049675 - MER34B-int LTR ERV1 -6078 253 69 446 273 99 37 chr6 365629 365951 -182049291 - MER34B LTR ERV1 -3 562 221 374 270 81 0 chr6 365991 366102 -182049140 - MER34B LTR ERV1 -441 124 5 198 50 75 0 chr6 367314 367354 -182047888 + GA-rich Low_complexity Low_complexity 5 47 0 254 351 114 8 chr6 367503 367634 -182047608 + L2 LINE L2 3100 3244 -28 278 272 198 46 chr6 367691 368015 -182047227 + L1ME4a LINE L1 5744 6116 -5 3737 155 22 10 chr6 369078 369770 -182045472 - L1MB3 LINE L1 -1 6182 5483 358 331 25 13 chr6 369945 370102 -182045140 - MIR SINE MIR -102 160 2 352 299 80 7 chr6 370351 370488 -182044754 - MIR SINE MIR -45 217 71 324 274 202 0 chr6 370546 370670 -182044572 + MIR SINE MIR 106 254 -8 1159 199 50 66 chr6 370675 371037 -182044205 - MLT1A2 LTR MaLR 0 374 19 28 29 0 0 chr6 371161 371196 -182044046 + AT_rich Low_complexity Low_complexity 1 35 0 2105 145 0 0 chr6 371295 371585 -182043657 - AluSx SINE Alu -22 290 1 22 35 0 0 chr6 371680 371709 -182043533 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr6 372460 372487 -182042755 + (T)n Simple_repeat Simple_repeat 1 27 0 7894 146 98 28 chr6 374151 375738 -182039504 - pTR5 LTR ERV1 0 2438 741 963 236 106 7 chr6 375987 376271 -182038971 - MER63 DNA MER1_type -74 987 676 247 328 74 16 chr6 378246 378368 -182036874 - L3 LINE CR1 -467 1110 982 702 223 37 115 chr6 379205 379561 -182035681 - MER33 DNA MER1_type -6 318 1 203 331 70 21 chr6 379578 379720 -182035522 + MIR SINE MIR 43 191 -71 462 178 0 40 chr6 380026 380127 -182035115 + L1MC2 LINE L1 6248 6344 0 480 241 14 148 chr6 380132 380348 -182034894 - MER91B DNA MER1_type -2 188 2 1085 143 26 0 chr6 381455 381644 -182033598 - L1PA16 LINE L1 -9 6157 5964 1223 231 21 37 chr6 381876 382391 -182032851 + L1ME1 LINE L1 5327 5997 -169 1994 126 7 37 chr6 382504 382825 -182032417 + AluSx SINE Alu 1 312 0 4190 142 80 40 chr6 383758 385076 -182030166 - pTR5 LTR ERV1 0 2438 743 232 241 215 0 chr6 386227 386306 -182028936 + MARNA DNA Mariner 295 390 -196 2714 178 21 55 chr6 386408 387031 -182028211 - L1MB3 LINE L1 -20 6163 5562 483 261 112 2 chr6 387573 387740 -182027502 - MIR SINE MIR -51 157 17 221 215 0 13 chr6 389252 389331 -182025911 + CT-rich Low_complexity Low_complexity 2 79 0 * 601 151 30 0 chr6 389312 389478 -182025764 + (CATCC)n Simple_repeat Simple_repeat 2 172 0 475 158 39 0 chr6 389511 389638 -182025604 + (CATCC)n Simple_repeat Simple_repeat 4 135 0 812 114 25 0 chr6 389665 389823 -182025419 + (CATCC)n Simple_repeat Simple_repeat 5 166 0 461 154 9 0 chr6 389839 389949 -182025293 + (CATCC)n Simple_repeat Simple_repeat 3 113 0 267 315 23 39 chr6 390083 390213 -182025029 + MLT1I LTR MaLR 59 186 -223 2173 109 3 3 chr6 391703 392005 -182023237 - AluSx SINE Alu -10 302 1 1419 130 0 0 chr6 393298 393523 -182021719 + AluSg/x SINE Alu 91 315 0 218 302 190 9 chr6 393656 393772 -182021470 + MIR SINE MIR 59 195 -67 1536 191 34 49 chr6 397188 397244 -182017998 + MLT1B LTR MaLR 1 56 -334 2109 121 119 16 chr6 397244 397631 -182017611 + MSTC LTR MaLR 1 427 -1 1536 191 34 49 chr6 397631 397962 -182017280 + MLT1B LTR MaLR 56 382 -8 195 250 96 0 chr6 397999 398051 -182017191 - MIR3 SINE MIR -34 174 118 309 284 11 11 chr6 398442 398537 -182016705 - L2 LINE L2 -769 2545 2451 5451 128 25 22 chr6 398785 399974 -182015268 + pTR5 LTR ERV1 743 2088 -350 439 226 29 80 chr6 400442 400579 -182014663 + pTR5 LTR ERV1 264 393 -2045 265 284 196 0 chr6 401351 401453 -182013789 + MIR SINE MIR 87 208 -54 3837 235 69 21 chr6 402793 404052 -182011190 - L1MCc LINE L1 -2225 4716 3397 1736 144 37 3 chr6 404053 404352 -182010890 - MER6 DNA MER2_type 0 865 557 2273 177 55 39 chr6 404543 404728 -182010514 - MER6 DNA MER2_type -306 559 378 2329 86 7 7 chr6 404728 405032 -182010210 - AluSc SINE Alu -1 308 5 2273 177 55 39 chr6 405032 405338 -182009904 - MER6 DNA MER2_type -487 378 60 6704 166 18 3 chr6 405364 406508 -182008734 - MSTA-int LTR MaLR -490 1161 1 2522 148 27 0 chr6 406508 406919 -182008323 - MSTA LTR MaLR -2 426 5 341 248 105 30 chr6 406919 407052 -182008190 - L1MCc LINE L1 -4383 2739 2597 6343 88 33 9 chr6 407044 408143 -182007099 - L1PA8 LINE L1 -4 6168 5061 334 280 72 61 chr6 408148 408412 -182006830 - L1MCc LINE L1 -4559 2563 2297 352 296 37 0 chr6 408417 408525 -182006717 - Tigger7 DNA MER2_type -6 2481 2370 668 156 88 47 chr6 408598 408627 -182006615 - Tigger7 DNA MER2_type -79 2408 2382 1146 206 102 93 chr6 408627 409088 -182006154 - MER4C LTR ERV1 0 465 1 668 156 88 47 chr6 409088 409250 -182005992 - Tigger7 DNA MER2_type -105 2382 2209 696 218 8 0 chr6 409255 409388 -182005854 - Tigger7 DNA MER2_type -563 170 37 1862 243 117 44 chr6 409456 409530 -182005712 - L1MCc LINE L1 -4887 1536 1469 217 49 0 49 chr6 409530 409571 -182005671 + (TG)n Simple_repeat Simple_repeat 2 40 0 1862 243 117 44 chr6 409571 410601 -182004641 - L1MCc LINE L1 -4954 1469 814 4262 143 36 14 chr6 410679 411451 -182003791 - L1MA9 LINE L1 -3 6309 5521 451 354 48 9 chr6 411500 411729 -182003513 - L3 LINE CR1 -100 1477 1240 182 318 100 0 chr6 411735 411845 -182003397 - L2 LINE L2 -3 3310 3190 331 244 52 44 chr6 413609 413744 -182001498 + L1ME4a LINE L1 5955 6090 -31 2255 114 0 6 chr6 413957 414272 -182000970 - AluSq SINE Alu 0 313 1 2244 65 14 0 chr6 416457 416732 -181998510 - AluSx SINE Alu -11 301 23 594 194 118 12 chr6 417389 417559 -181997683 + L1MD3 LINE L1 7798 7985 -10 703 88 51 8 chr6 419745 419986 -181995256 + (TA)n Simple_repeat Simple_repeat 1 251 0 2387 84 0 3 chr6 422659 422955 -181992287 + AluSc SINE Alu 1 295 -14 481 126 0 99 chr6 423892 424003 -181991239 + L1MA3 LINE L1 6204 6303 -2 256 339 39 23 chr6 425165 425295 -181989947 - L2 LINE L2 0 3272 3141 200 267 22 56 chr6 425824 425914 -181989328 + MIR SINE MIR 65 151 -111 267 254 48 120 chr6 426046 426255 -181988987 + L2 LINE L2 3073 3266 -6 207 206 0 0 chr6 426264 426298 -181988944 + L2 LINE L2 3168 3201 -71 1533 265 167 39 chr6 426495 427370 -181987872 + L1ME2 LINE L1 100 1086 -4984 1080 247 44 16 chr6 427364 427680 -181987562 + L1ME2 LINE L1 5285 5609 -489 * 2551 40 3 3 chr6 427770 428070 -181987172 + AluY SINE Alu 1 300 -11 1236 175 4 43 chr6 428076 428310 -181986932 + AluJb SINE Alu 71 295 -17 1342 236 89 14 chr6 428310 428746 -181986496 + L1ME2 LINE L1 5630 6098 0 3432 168 46 27 chr6 430260 430993 -181984249 - L1MB8 LINE L1 0 6178 5432 1409 223 113 9 chr6 430993 431543 -181983699 - L1MB8 LINE L1 -940 5206 4574 849 58 53 0 chr6 432811 432982 -181982260 + (TA)n Simple_repeat Simple_repeat 1 180 0 909 51 28 22 chr6 432999 433177 -181982065 + (TA)n Simple_repeat Simple_repeat 2 180 0 267 150 0 0 chr6 433201 433261 -181981981 + (TA)n Simple_repeat Simple_repeat 2 61 0 410 323 56 0 chr6 433735 433896 -181981346 - MIR SINE MIR -75 187 18 387 0 0 0 chr6 434813 434856 -181980386 + (TG)n Simple_repeat Simple_repeat 2 44 0 272 235 13 134 chr6 437483 437632 -181977610 + L1ME LINE L1 13 143 -5927 353 281 113 45 chr6 439607 439828 -181975414 - MIR SINE MIR -14 248 13 21 57 0 0 chr6 440667 440702 -181974540 + AT_rich Low_complexity Low_complexity 1 35 0 500 183 99 47 chr6 441338 441529 -181973713 + L1ME LINE L1 762 962 -5108 * 13058 29 9 2 chr6 441525 443103 -181972139 + L1P LINE L1 2567 4156 -1990 2755 248 72 46 chr6 443097 444874 -181970368 + L1ME LINE L1 729 2552 -3528 * 1399 216 65 30 chr6 444880 445339 -181969903 + L1ME LINE L1 2660 3134 -2946 1809 142 110 23 chr6 446657 446967 -181968275 + MER1B DNA MER1_type 1 337 0 2004 146 0 0 chr6 448340 448620 -181966622 - AluSx SINE Alu -32 280 1 2252 109 0 3 chr6 449803 450106 -181965136 + AluSq SINE Alu 1 302 -11 786 107 13 3 chr6 450283 450404 -181964838 + MSTA LTR MaLR 319 428 0 3300 141 33 2 chr6 450404 450923 -181964319 + MSTA-int LTR MaLR 1 535 -1116 371 190 40 30 chr6 451018 451118 -181964124 - MER34B-int LTR ERV1 -4937 1394 1294 390 216 36 82 chr6 451457 451651 -181963591 - MER34B-int LTR ERV1 -6078 253 69 474 258 106 43 chr6 451713 452035 -181963207 - MER34B LTR ERV1 -3 562 221 392 270 81 0 chr6 452075 452186 -181963056 - MER34B LTR ERV1 -441 124 5 198 50 75 0 chr6 453398 453438 -181961804 + GA-rich Low_complexity Low_complexity 5 47 0 251 351 114 8 chr6 453587 453718 -181961524 + L2 LINE L2 3100 3244 -28 300 261 203 51 chr6 453775 454070 -181961172 + L1ME4a LINE L1 5744 6083 -38 198 65 32 65 chr6 455042 455104 -181960138 + (TCTCC)n Simple_repeat Simple_repeat 1 60 0 * 823 75 43 12 chr6 455101 455262 -181959980 + (TCTCTG)n Simple_repeat Simple_repeat 3 168 0 402 38 53 61 chr6 455236 455367 -181959875 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 * 3048 216 66 7 chr6 455524 455801 -181959441 - MER44D DNA MER2_type -1890 597 338 1645 178 17 0 chr6 455801 456099 -181959143 - AluJb SINE Alu -8 304 2 3048 216 66 7 chr6 456099 456506 -181958736 - MER44D DNA MER2_type -2149 338 1 2125 118 7 0 chr6 457993 458297 -181956945 - AluSx SINE Alu -6 306 1 197 275 22 33 chr6 459140 459231 -181956011 + L2 LINE L2 2135 2224 -1090 513 259 107 10 chr6 459723 459928 -181955314 + MIR SINE MIR 9 233 -29 595 200 14 48 chr6 460848 460993 -181954249 - MER4C LTR ERV1 -63 402 263 1253 180 74 77 chr6 461083 461433 -181953809 - MER4A LTR ERV1 -315 349 1 499 258 144 25 chr6 461435 461761 -181953481 - L1M4 LINE L1 -2931 3215 2851 812 153 24 0 chr6 461761 461885 -181953357 + FLAM_C SINE Alu 1 127 -16 250 250 99 128 chr6 461885 462263 -181952979 - L1M4 LINE L1 -3282 2864 2511 2049 110 7 0 chr6 462263 462554 -181952688 - AluSq SINE Alu -20 293 1 250 250 99 128 chr6 462554 462814 -181952428 - L1M4 LINE L1 -3635 2511 2245 301 224 58 24 chr6 463091 463509 -181951733 - L1MD2 LINE L1 0 7808 6165 2092 110 0 0 chr6 464100 464391 -181950851 + AluSg SINE Alu 1 291 -19 467 292 150 36 chr6 564618 565129 -181850113 - L2 LINE L2 0 3313 1016 335 307 63 8 chr6 566065 566192 -181849050 + L3 LINE CR1 1444 1577 0 233 275 50 50 chr6 566266 566346 -181848896 + L2 LINE L2 3144 3223 -49 4187 169 65 29 chr6 566367 567161 -181848081 - MER6 DNA MER2_type -2 863 36 2070 102 39 3 chr6 567161 567444 -181847798 + AluSx SINE Alu 3 295 -17 4187 169 65 29 chr6 567444 567482 -181847760 - MER6 DNA MER2_type -829 36 1 303 143 20 0 chr6 567546 567595 -181847647 - Tigger5 DNA MER2_type -15 2308 2259 * 1251 226 38 7 chr6 567592 567880 -181847362 - Tigger5 DNA MER2_type -2026 297 1 360 267 102 32 chr6 568914 569101 -181846141 + MLT1J2 LTR MaLR 251 450 0 242 29 29 0 chr6 569666 569701 -181845541 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 392 183 0 0 chr6 569839 569910 -181845332 - L1MB8 LINE L1 -1 6177 6107 648 191 27 58 chr6 570036 570224 -181845018 - L1MB8 LINE L1 -21 6157 5976 3376 205 30 6 chr6 570340 571228 -181844014 - L1MB8 LINE L1 -186 5992 5086 2343 92 0 3 chr6 571273 571578 -181843664 - AluY SINE Alu -7 304 1 698 275 60 51 chr6 571664 571998 -181843244 + HAL1b LINE L1 209 545 -803 187 300 17 0 chr6 572102 572162 -181843080 + L2 LINE L2 3176 3236 -77 780 201 50 17 chr6 572278 572457 -181842785 - MER5A DNA MER1_type 0 189 5 542 211 191 27 chr6 572470 572617 -181842625 - MER5B DNA MER1_type -5 173 3 227 350 50 0 chr6 572715 572815 -181842427 + L2 LINE L2 3207 3311 -2 512 316 102 24 chr6 573194 573529 -181841713 + L2 LINE L2 1843 2203 -1111 210 306 241 20 chr6 575534 575733 -181839509 + L3 LINE CR1 356 598 -979 316 341 98 43 chr6 575742 576047 -181839195 + L3 LINE CR1 709 1030 -547 10028 115 9 2 chr6 576550 576858 -181838384 + L1PA10 LINE L1 3956 4260 -1908 2009 154 3 3 chr6 576858 577169 -181838073 - AluSx SINE Alu -1 311 1 10028 115 9 2 chr6 577169 579067 -181836175 + L1PA10 LINE L1 4260 6166 -2 563 125 10 0 chr6 579444 579548 -181835694 + (GA)n Simple_repeat Simple_repeat 1 105 0 391 275 17 0 chr6 579572 579692 -181835550 - L2 LINE L2 0 3313 3192 198 245 51 82 chr6 579800 579898 -181835344 - MIR SINE MIR -63 199 105 23 0 0 0 chr6 580062 580085 -181835157 + AT_rich Low_complexity Low_complexity 1 23 0 2800 103 0 20 chr6 580085 580475 -181834767 - L1PB1 LINE L1 -1 6150 5769 233 267 0 11 chr6 580495 580585 -181834657 - L1MC4 LINE L1 -1340 6702 6614 290 140 35 0 chr6 580585 580642 -181834600 + (TATG)n Simple_repeat Simple_repeat 3 61 0 5060 172 5 5 chr6 580642 582172 -181833070 - L1P5 LINE L1 -360 5791 4262 618 222 12 8 chr6 582270 582520 -181832722 + GA-rich Low_complexity Low_complexity 1 251 0 206 150 0 25 chr6 582631 582671 -181832571 + (CAAG)n Simple_repeat Simple_repeat 1 39 0 * 314 281 0 12 chr6 582649 582731 -181832511 + GA-rich Low_complexity Low_complexity 3 83 0 863 261 114 19 chr6 586005 586330 -181828912 - MLT1J LTR MaLR -131 380 25 2199 100 0 34 chr6 586330 586650 -181828592 + AluSx SINE Alu 1 309 -3 699 256 125 38 chr6 587123 587428 -181827814 + LTR16C LTR ERVL 144 480 -11 1647 201 175 24 chr6 587428 587880 -181827362 - MLT2B1 LTR ERVL 0 520 1 699 256 125 38 chr6 587880 587894 -181827348 + LTR16C LTR ERVL 480 491 0 237 216 157 0 chr6 587958 588009 -181827233 + L2 LINE L2 3239 3297 -16 263 320 69 15 chr6 589442 589645 -181825597 - MLT1C LTR MaLR -7 460 247 1735 57 0 13 chr6 589646 589876 -181825366 - AluY SINE Alu -84 227 1 762 193 66 0 chr6 589895 590061 -181825181 - MLT1D-int LTR MaLR -1193 178 2 293 130 19 37 chr6 590062 590116 -181825126 - MLT2C1 LTR ERVL 0 520 468 1907 154 50 71 chr6 590195 590577 -181824665 + THE1C LTR MaLR 1 374 -1 1640 177 88 9 chr6 590632 590949 -181824293 - MLT2C1 LTR ERVL -48 349 8 2379 55 3 39 chr6 591290 591600 -181823642 - AluY SINE Alu -12 299 1 307 287 85 53 chr6 591636 591824 -181823418 - L1ME4a LINE L1 -2 6119 5926 238 299 43 104 chr6 593322 593553 -181821689 + L2 LINE L2 2695 2911 -403 1602 223 31 77 chr6 593554 594075 -181821167 - MLT1D LTR MaLR 0 505 9 196 229 0 100 chr6 594163 594233 -181821009 + L2 LINE L2 3158 3220 -93 650 267 32 45 chr6 594674 594921 -181820321 - LTR33 LTR ERVL 0 521 278 711 285 38 29 chr6 594968 595308 -181819934 + L1M4 LINE L1 3101 3443 -2703 299 232 14 0 chr6 596570 596639 -181818603 - LTR33 LTR ERVL -26 495 426 310 42 42 0 chr6 596720 596768 -181818474 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 228 176 0 0 chr6 596991 597042 -181818200 - LTR33 LTR ERVL -470 51 1 2108 128 0 0 chr6 597688 597995 -181817247 + AluSq SINE Alu 1 307 0 261 114 63 13 chr6 598316 598395 -181816847 + CT-rich Low_complexity Low_complexity 2 84 0 822 295 93 42 chr6 599276 599813 -181815429 + L1M4 LINE L1 3863 4450 -1696 2400 72 7 0 chr6 599813 600105 -181815137 + AluSp SINE Alu 1 294 -19 822 295 93 42 chr6 600105 600310 -181814932 + L1M4 LINE L1 4450 4643 -1503 229 191 95 16 chr6 600321 600384 -181814858 - LTR13 LTR ERVK -698 309 242 761 225 34 49 chr6 600442 600709 -181814533 + LTR13 LTR ERVK 1 263 -744 22 0 0 0 chr6 602808 602830 -181812412 + AT_rich Low_complexity Low_complexity 1 22 0 229 318 120 54 chr6 603923 604165 -181811077 - L2 LINE L2 -398 2916 2659 201 121 0 0 chr6 604419 604452 -181810790 + (GA)n Simple_repeat Simple_repeat 2 34 0 194 150 25 0 chr6 604452 604492 -181810750 + (TA)n Simple_repeat Simple_repeat 1 41 0 1234 116 32 26 chr6 605123 605312 -181809930 - L1PA15 LINE L1 -7 6158 5969 2235 228 82 14 chr6 605449 606036 -181809206 - L1ME3 LINE L1 0 6162 5536 934 153 23 6 chr6 606371 606547 -181808695 - L1MA4 LINE L1 -4 6296 6118 1209 215 27 5 chr6 606818 607037 -181808205 - MER58A DNA MER1_type 0 224 1 308 336 55 48 chr6 607124 607270 -181807972 - L1ME2 LINE L1 -287 5877 5731 417 246 84 14 chr6 607270 607412 -181807830 + MIR SINE MIR 111 262 0 652 306 52 29 chr6 607609 608053 -181807189 + L1ME3 LINE L1 4590 5043 -1103 12537 126 13 36 chr6 608166 610265 -181804977 + Tigger1 DNA MER2_type 1 2018 -400 1913 103 3 94 chr6 610265 610584 -181804658 + AluSq SINE Alu 1 290 -23 12537 126 13 36 chr6 610584 610785 -181804457 + Tigger1 DNA MER2_type 2018 2222 -196 260 174 31 10 chr6 610791 610889 -181804353 + (TA)n Simple_repeat Simple_repeat 1 100 0 881 136 65 0 chr6 610894 611048 -181804194 + Tigger1 DNA MER2_type 2255 2418 0 950 295 102 31 chr6 611069 611263 -181803979 + L1ME3 LINE L1 5258 5437 -725 2203 132 3 0 chr6 611263 611751 -181803491 + AluSq SINE Alu 1 313 0 950 295 102 31 chr6 611751 612142 -181803100 + L1ME3 LINE L1 5437 5885 -277 35 41 0 0 chr6 612389 612438 -181802804 + AT_rich Low_complexity Low_complexity 1 49 0 2440 48 3 0 chr6 614085 614377 -181800865 + AluY SINE Alu 1 293 -18 925 138 0 0 chr6 614477 614607 -181800635 - AluSp SINE Alu -183 130 1 2075 96 15 4 chr6 614929 615201 -181800041 + AluSq SINE Alu 27 301 -12 345 273 50 22 chr6 615201 615340 -181799902 + MARNA DNA Mariner 411 553 -33 520 304 42 51 chr6 615600 616051 -181799191 + L2 LINE L2 2867 3313 0 555 260 19 7 chr6 617594 617748 -181797494 - L2 LINE L2 -5 3308 3153 470 336 38 19 chr6 617841 618052 -181797190 + MIR SINE MIR 22 236 -26 234 0 0 0 chr6 620673 620699 -181794543 + (TC)n Simple_repeat Simple_repeat 1 26 0 219 250 0 0 chr6 623109 623177 -181792065 + GA-rich Low_complexity Low_complexity 5 72 0 1501 172 41 28 chr6 623247 623538 -181791704 + AluJo SINE Alu 3 297 -15 989 145 6 52 chr6 623614 623786 -181791456 - AluJb SINE Alu -17 295 132 5713 139 3 0 chr6 623786 624899 -181790343 - L1PA14 LINE L1 0 6161 5047 3104 168 2 0 chr6 624902 625450 -181789792 + L1P LINE L1 3988 4536 -1610 366 284 31 89 chr6 625774 626066 -181789176 - LTR16C LTR ERVL -109 382 108 2616 68 0 0 chr6 626367 626676 -181788566 + AluY SINE Alu 1 309 -2 664 213 27 19 chr6 627278 627457 -181787785 + MER5A DNA MER1_type 3 189 0 280 274 168 58 chr6 628969 629279 -181785963 + L2 LINE L2 1653 1996 -1318 1322 166 200 10 chr6 629298 629476 -181785766 + MER7A DNA MER2_type 4 147 -2891 1489 102 56 0 chr6 629476 629691 -181785551 + MER30 DNA MER1_type 2 228 -2 1322 166 200 10 chr6 629691 629802 -181785440 + MER7A DNA MER2_type 147 346 0 211 328 74 0 chr6 630037 630159 -181785083 + L2 LINE L2 2680 2810 -504 241 291 134 34 chr6 630229 630497 -181784745 + L2 LINE L2 2935 3229 -84 1241 185 161 24 chr6 630982 631323 -181783919 - MLT1B LTR MaLR 0 390 3 2429 88 0 3 chr6 631352 631658 -181783584 + AluSq SINE Alu 1 305 -8 251 290 107 0 chr6 632210 632341 -181782901 + L2 LINE L2 1976 2120 -1194 526 299 57 10 chr6 632377 632571 -181782671 + L2 LINE L2 2238 2440 -874 550 254 109 16 chr6 632584 632777 -181782465 - MIR SINE MIR 0 262 52 318 328 154 17 chr6 632860 633275 -181781967 + L2 LINE L2 2474 2945 -369 508 314 42 29 chr6 633334 633719 -181781523 + L2 LINE L2 2924 3313 0 343 246 69 23 chr6 635755 635885 -181779357 - L2 LINE L2 0 3272 3137 260 250 0 0 chr6 636764 636828 -181778414 - MLT1I LTR MaLR 0 409 346 339 231 13 0 chr6 637217 637295 -181777947 + MIR3 SINE MIR 113 191 -17 5178 20 3 3 chr6 637743 638334 -181776908 + L1PA3 LINE L1 5565 6155 0 22 35 0 0 chr6 640249 640278 -181774964 + AT_rich Low_complexity Low_complexity 1 29 0 219 259 0 0 chr6 643331 643416 -181771826 + (TG)n Simple_repeat Simple_repeat 1 85 0 192 253 0 0 chr6 643450 643525 -181771717 + (TATG)n Simple_repeat Simple_repeat 4 78 0 426 318 17 6 chr6 643527 643700 -181771542 + (TG)n Simple_repeat Simple_repeat 1 175 0 25 51 0 0 chr6 644520 644559 -181770683 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 644929 644951 -181770291 + AT_rich Low_complexity Low_complexity 1 22 0 2421 97 0 0 chr6 647527 647838 -181767404 + AluY SINE Alu 1 311 0 284 339 46 9 chr6 647862 647971 -181767271 - MIR3 SINE MIR -9 199 87 308 205 212 40 chr6 650032 650183 -181765059 - L2 LINE L2 -11 3302 3126 1395 165 4 16 chr6 651213 651455 -181763787 + AluJo SINE Alu 54 292 -20 464 244 289 29 chr6 651519 651834 -181763408 - LTR16C LTR ERVL -10 481 85 376 321 54 29 chr6 652016 652296 -181762946 - ERVL LTR ERVL -384 5380 5094 252 346 48 18 chr6 652539 652767 -181762475 - ERVL LTR ERVL -1120 4644 4410 2258 98 7 7 chr6 653522 653828 -181761414 - AluSc SINE Alu -3 306 1 467 219 89 0 chr6 653859 653982 -181761260 + MER94 DNA DNA 1 134 0 1067 288 151 12 chr6 654058 654742 -181760500 + L2 LINE L2 1015 1793 -1521 523 138 92 28 chr6 654745 654854 -181760388 - MER53 DNA DNA -2 187 72 2867 161 205 20 chr6 654865 655474 -181759768 - pTR5 LTR ERV1 0 2438 1717 2206 144 108 2 chr6 657802 658199 -181757043 - Tigger2 DNA MER2_type 0 2718 2280 415 174 14 0 chr6 658196 658265 -181756977 + MER8 DNA MER2_type 170 239 0 * 308 161 54 0 chr6 658504 658560 -181756682 + L2 LINE L2 3214 3272 0 1904 128 24 0 chr6 658815 659104 -181756138 - AluYa5 SINE Alu -15 296 1 1391 226 7 3 chr6 659175 659458 -181755784 - AluJo SINE Alu -28 284 1 183 217 0 43 chr6 660416 660462 -181754780 + MIR SINE MIR 204 247 -15 368 368 162 25 chr6 660974 661821 -181753421 + L2 LINE L2 959 1921 -1393 249 269 103 13 chr6 661819 661897 -181753345 + L2 LINE L2 3229 3313 0 * 1996 114 10 33 chr6 662058 662364 -181752878 + AluJo SINE Alu 10 308 -4 2193 80 35 7 chr6 663271 663557 -181751685 + AluSg SINE Alu 1 294 -16 414 51 0 0 chr6 663604 663663 -181751579 + AluSc SINE Alu 245 303 -6 225 0 0 0 chr6 664380 664405 -181750837 + (TG)n Simple_repeat Simple_repeat 2 26 0 211 338 0 0 chr6 665303 665374 -181749868 + C-rich Low_complexity Low_complexity 6 76 0 488 174 31 39 chr6 666678 666869 -181748373 - L1MB7 LINE L1 -66 6114 5889 2428 76 0 3 chr6 667033 667337 -181747905 + AluY SINE Alu 1 303 -8 22 56 0 0 chr6 667982 668018 -181747224 + AT_rich Low_complexity Low_complexity 1 36 0 419 246 123 35 chr6 669299 669502 -181745740 + L1MC5 LINE L1 7711 7931 -30 302 253 53 0 chr6 669528 669603 -181745639 + MIR SINE MIR 34 112 -150 358 330 89 65 chr6 669769 670296 -181744946 - L1ME LINE L1 -315 5806 5267 26 50 0 0 chr6 670510 670550 -181744692 + AT_rich Low_complexity Low_complexity 1 40 0 276 255 128 10 chr6 671172 671274 -181743968 - MIR SINE MIR -72 190 77 279 0 0 0 chr6 671567 671598 -181743644 + (TG)n Simple_repeat Simple_repeat 1 31 0 282 281 305 0 chr6 671598 671762 -181743480 + MIR SINE MIR 13 226 -36 1723 98 0 0 chr6 671766 671981 -181743261 + AluSg SINE Alu 1 215 -95 22 35 0 0 chr6 672105 672134 -181743108 + AT_rich Low_complexity Low_complexity 1 29 0 1410 171 209 31 chr6 674332 674776 -181740466 - MER74A LTR ERVL -2 556 34 288 0 0 0 chr6 674788 674820 -181740422 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 1089 135 17 97 chr6 675534 675771 -181739471 + Tigger1 DNA MER2_type 1 218 -2200 2064 112 36 7 chr6 676251 676555 -181738687 - AluSq SINE Alu 0 313 1 641 196 21 21 chr6 676688 676831 -181738411 + L1MCa LINE L1 12 154 -6272 * 891 211 11 6 chr6 676827 677007 -181738235 + L1MCa LINE L1 79 259 -6167 * 3146 190 77 31 chr6 677005 677603 -181737639 + L1MCa LINE L1 776 1345 -5081 194 0 39 0 chr6 677603 677629 -181737613 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3146 190 77 31 chr6 677629 678030 -181737212 + L1MCa LINE L1 1345 1916 -4510 1751 159 152 42 chr6 678127 678155 -181737087 + Charlie1 DNA MER1_type 578 602 -2159 1847 134 78 0 chr6 678155 678458 -181736784 - AluSx SINE Alu 0 312 1 909 165 0 0 chr6 678466 678599 -181736643 - FLAM_A SINE Alu 0 133 1 1751 159 152 42 chr6 678599 678970 -181736272 + Charlie1 DNA MER1_type 608 1031 -1730 24 0 0 0 chr6 679028 679052 -181736190 + AT_rich Low_complexity Low_complexity 1 24 0 906 201 50 30 chr6 680559 680858 -181734384 - MER2 DNA MER2_type 0 345 6 1149 205 115 0 chr6 681294 681572 -181733670 + L1MCa LINE L1 1302 1611 -4815 2936 164 32 26 chr6 681574 681612 -181733630 - MLT2B3 LTR ERVL 0 554 518 447 19 0 0 chr6 681612 681664 -181733578 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 2936 164 32 26 chr6 681664 682161 -181733081 - MLT2B3 LTR ERVL -36 518 16 2145 164 118 27 chr6 682170 682694 -181732548 + L1MCa LINE L1 1713 2284 -4142 1609 140 43 37 chr6 682694 682994 -181732248 + L1MC2 LINE L1 6025 6326 -18 759 298 58 0 chr6 683374 683582 -181731660 - MER58A DNA MER1_type -3 221 2 12413 202 81 31 chr6 683589 685314 -181729928 - L1PB1 LINE L1 -2 6865 5227 189 0 0 0 chr6 685314 685335 -181729907 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 12413 202 81 31 chr6 685335 686521 -181728721 - L1PB1 LINE L1 -1640 5227 4101 881 118 0 0 chr6 686521 686640 -181728602 - AluSg/x SINE Alu -15 297 179 12413 202 81 31 chr6 686640 690124 -181725118 - L1PB1 LINE L1 -2766 4101 51 321 182 171 0 chr6 690127 690215 -181725027 + MER106B DNA MER1_type 957 1059 0 236 331 21 14 chr6 690241 690389 -181724853 + L1P LINE L1 4077 4232 -1914 2375 98 0 0 chr6 690565 690860 -181724382 + AluSq SINE Alu 1 295 -18 260 27 27 0 chr6 690860 690897 -181724345 + (TA)n Simple_repeat Simple_repeat 2 39 0 449 290 60 33 chr6 690936 691119 -181724123 - L2 LINE L2 0 3313 3126 581 245 153 38 chr6 691808 692155 -181723087 + L1ME4a LINE L1 5533 5919 -202 14926 132 27 17 chr6 694030 694696 -181720546 - Tigger1 DNA MER2_type -1 2417 1759 2140 136 0 13 chr6 694696 695012 -181720230 - AluJo SINE Alu 0 312 1 14926 132 27 17 chr6 695012 696732 -181718510 - Tigger1 DNA MER2_type -659 1759 7 2381 91 0 0 chr6 697458 697754 -181717488 - AluSg SINE Alu -14 296 1 2035 140 3 0 chr6 697828 698158 -181717084 - AluSx SINE Alu 0 312 1 2393 75 0 16 chr6 698197 698502 -181716740 + AluY SINE Alu 1 300 -11 244 283 109 36 chr6 699178 699316 -181715926 - MIR3 SINE MIR -23 185 38 22 0 0 0 chr6 699413 699435 -181715807 + AT_rich Low_complexity Low_complexity 1 22 0 947 201 0 0 chr6 700341 700510 -181714732 + FAM SINE Alu 1 169 -6 1799 138 57 27 chr6 700517 700813 -181714429 + AluJo SINE Alu 1 305 -7 310 244 49 0 chr6 701339 701421 -181713821 - L2 LINE L2 -5 3308 3223 252 345 101 14 chr6 701996 702135 -181713107 + MIR3 SINE MIR 47 197 -11 323 244 2 0 chr6 703026 703118 -181712124 - L1MC4 LINE L1 0 8042 7681 765 227 74 29 chr6 703130 703372 -181711870 - L1MC4 LINE L1 -55 7987 7735 674 217 91 11 chr6 703373 703548 -181711694 + L1MC4 LINE L1 7392 7580 -462 1156 201 225 0 chr6 703556 703889 -181711353 - L1MC4 LINE L1 -1040 7002 6595 * 5909 222 167 31 chr6 703883 706503 -181708739 - L1M4 LINE L1 -778 5368 2392 278 274 49 20 chr6 706518 706620 -181708622 - L1MEc LINE L1 -4648 1748 1644 619 253 32 58 chr6 706689 707001 -181708241 - L1MEc LINE L1 -5090 1115 812 708 196 106 32 chr6 707011 707200 -181708042 - MER21B LTR ERV1 -1 862 660 555 245 77 77 chr6 707963 708249 -181706993 - MER21B LTR ERV1 -573 290 5 262 284 116 53 chr6 708267 708492 -181706750 - HAL1 LINE L1 -145 2362 2124 1862 153 24 66 chr6 708655 709035 -181706207 - MLT1B LTR MaLR -2 388 25 356 260 103 113 chr6 709098 709171 -181706071 - HAL1 LINE L1 -1591 916 844 3800 136 71 5 chr6 709171 709774 -181705468 + LTR48B LTR ERV1 1 643 -1 356 260 103 113 chr6 709774 710000 -181705242 - HAL1 LINE L1 -1663 844 620 2313 90 7 0 chr6 710578 710878 -181704364 - AluSg SINE Alu -7 303 2 340 354 31 10 chr6 710889 711105 -181704137 - MIR SINE MIR -13 249 3 2242 103 0 6 chr6 713438 713749 -181701493 - AluSc SINE Alu 0 309 1 31 68 0 0 chr6 714730 714789 -181700453 + AT_rich Low_complexity Low_complexity 1 59 0 1914 129 0 60 chr6 715146 715463 -181699779 + AluJb SINE Alu 2 299 -13 300 307 181 0 chr6 717171 717376 -181697866 + MIR SINE MIR 17 258 -4 22 0 0 0 chr6 717632 717654 -181697588 + AT_rich Low_complexity Low_complexity 1 22 0 180 219 0 0 chr6 717689 717730 -181697512 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2358 90 0 19 chr6 717960 718272 -181696970 - AluSg SINE Alu -4 306 1 570 287 123 0 chr6 721270 721465 -181693777 + MIR SINE MIR 34 252 -10 772 215 41 0 chr6 721710 721882 -181693360 - LTR37A LTR ERV1 0 426 248 195 42 0 0 chr6 722262 722286 -181692956 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 722521 722542 -181692700 + AT_rich Low_complexity Low_complexity 1 21 0 2315 88 0 3 chr6 722637 722931 -181692311 + AluSx SINE Alu 1 293 -19 204 40 0 0 chr6 723989 724014 -181691228 + (A)n Simple_repeat Simple_repeat 1 25 0 185 213 187 27 chr6 724934 725009 -181690233 + MIR SINE MIR 105 191 -71 384 258 273 10 chr6 725059 725257 -181689985 - MIR SINE MIR 0 262 13 275 314 34 25 chr6 727383 727501 -181687741 - MER117 DNA MER1_type -43 154 36 24 0 0 0 chr6 732529 732553 -181682689 + AT_rich Low_complexity Low_complexity 1 24 0 1236 105 17 6 chr6 732596 732800 -181682442 + AluSc SINE Alu 106 311 0 2690 23 0 0 chr6 732906 733207 -181682035 - AluY SINE Alu -9 302 2 379 287 43 28 chr6 733538 733771 -181681471 - L1MC5 LINE L1 -218 7824 7501 1329 112 0 0 chr6 733784 733962 -181681280 - AluSg/x SINE Alu -4 308 131 405 207 18 36 chr6 733983 734094 -181681148 - L1MC5 LINE L1 -483 7478 7370 336 111 0 0 chr6 734309 734363 -181680879 + (CA)n Simple_repeat Simple_repeat 2 55 0 21 57 0 0 chr6 734772 734807 -181680435 + AT_rich Low_complexity Low_complexity 1 35 0 1890 236 68 23 chr6 734930 735443 -181679799 - MER77 LTR ERV1 -10 595 60 205 50 25 25 chr6 735607 735647 -181679595 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1220 15 0 0 chr6 735648 735778 -181679464 - L1PA4 LINE L1 -13 6142 6013 201 74 0 0 chr6 736063 736090 -181679152 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 598 225 191 0 chr6 737188 737361 -181677881 + MER58C DNA MER1_type 1 206 -9 1284 144 42 14 chr6 738839 739054 -181676188 - MER46A DNA MER2_type -15 221 1 749 148 6 42 chr6 741828 742000 -181673242 + MER3 DNA MER1_type 1 209 0 626 320 61 4 chr6 742047 742275 -181672967 - MIR SINE MIR -5 257 17 2839 240 97 9 chr6 742277 743069 -181672173 + Tigger6a DNA MER2_type 1 862 -221 3541 47 0 0 chr6 743102 743507 -181671735 - L1PA5 LINE L1 -2 6152 5748 4956 40 2 0 chr6 743507 744126 -181671116 + L1P LINE L1 2831 3450 -2696 885 219 59 0 chr6 744126 744345 -181670897 + Tigger6a DNA MER2_type 850 1081 -2 337 339 58 37 chr6 745387 745576 -181669666 + MIR SINE MIR 49 241 -21 278 342 57 25 chr6 745699 745857 -181669385 - L2 LINE L2 -1063 2251 2089 469 255 75 70 chr6 745868 746068 -181669174 + MER63A DNA MER1_type 1 201 -9 623 227 97 5 chr6 751162 751347 -181663895 - L1ME2 LINE L1 0 6164 5963 2283 84 0 24 chr6 752050 752348 -181662894 + AluSg SINE Alu 1 291 -19 471 298 54 0 chr6 752428 752596 -181662646 + MIR SINE MIR 76 252 -10 1715 181 11 0 chr6 752866 753153 -181662089 + AluJo SINE Alu 4 293 -19 229 311 37 30 chr6 753613 753748 -181661494 - MIR3 SINE MIR -6 202 67 2062 128 0 28 chr6 756465 756786 -181658456 - AluSx SINE Alu 0 312 1 180 261 22 0 chr6 757371 757417 -181657825 - L2 LINE L2 -25 3247 3201 406 316 153 54 chr6 757764 758847 -181656395 - L2 LINE L2 -22 3250 2028 21 0 0 0 chr6 759215 759236 -181656006 + AT_rich Low_complexity Low_complexity 1 21 0 302 229 60 131 chr6 759360 759398 -181655844 + MER5B DNA MER1_type 6 45 -133 2432 50 0 30 chr6 759398 759699 -181655543 - AluY SINE Alu -13 298 7 302 229 60 131 chr6 759699 759843 -181655399 + MER5B DNA MER1_type 45 175 -3 262 293 71 10 chr6 760036 760135 -181655107 - L2 LINE L2 -213 3059 2955 2080 107 7 24 chr6 760878 761176 -181654066 + AluSg SINE Alu 1 293 -17 699 209 68 80 chr6 761401 761727 -181653515 - L1MC5 LINE L1 -28 7933 7612 2429 71 0 0 chr6 761986 762281 -181652961 + AluY SINE Alu 1 295 -16 23 33 0 0 chr6 765427 765457 -181649785 + AT_rich Low_complexity Low_complexity 1 30 0 255 125 0 0 chr6 766762 766802 -181648440 + (TA)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr6 766886 766906 -181648336 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 2148 113 3 10 chr6 768217 768518 -181646724 - AluSx SINE Alu -13 299 1 211 280 40 13 chr6 768735 768810 -181646432 - MIR3 SINE MIR 0 208 132 2209 130 0 0 chr6 769190 769490 -181645752 + AluSg SINE Alu 1 300 -10 21 95 0 0 chr6 770473 770536 -181644706 + AT_rich Low_complexity Low_complexity 1 63 0 521 264 39 19 chr6 771098 771253 -181643989 + L2 LINE L2 3156 3313 0 23 68 0 0 chr6 771336 771380 -181643862 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 772503 772524 -181642718 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 772925 772959 -181642283 + AT_rich Low_complexity Low_complexity 1 34 0 1726 92 78 163 chr6 773806 774107 -181641135 - MSTB LTR MaLR 0 426 176 1581 109 17 0 chr6 774107 774346 -181640896 - MER75B DNA T2_type 0 243 1 1726 92 78 163 chr6 774346 774503 -181640739 - MSTB LTR MaLR -250 176 7 218 263 105 94 chr6 774694 774865 -181640377 + L2 LINE L2 3136 3308 -5 628 313 86 48 chr6 775190 775749 -181639493 + L1MC4a LINE L1 5535 6114 -1694 58 60 0 0 chr6 775790 775890 -181639352 + AT_rich Low_complexity Low_complexity 1 100 0 394 243 189 0 chr6 777157 777268 -181637974 + MIR SINE MIR 64 195 -67 350 230 355 7 chr6 778764 778916 -181636326 + MIR SINE MIR 58 262 0 185 318 0 61 chr6 778926 778992 -181636250 + L2 LINE L2 3234 3295 -18 2519 62 0 0 chr6 779097 779402 -181635840 + AluY SINE Alu 1 305 -6 814 262 74 68 chr6 780925 781436 -181633806 - MLT2B1 LTR ERVL -6 514 1 382 283 23 28 chr6 781799 781976 -181633266 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 33 0 0 0 chr6 782038 782071 -181633171 + AT_rich Low_complexity Low_complexity 1 33 0 250 324 0 0 chr6 782130 782241 -181633001 - L2 LINE L2 -254 3059 2949 635 302 215 6 chr6 782383 782876 -181632366 - L2 LINE L2 -608 2706 2111 226 315 240 0 chr6 783157 783303 -181631939 + L2 LINE L2 2603 2783 -531 21 0 0 0 chr6 783483 783504 -181631738 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 783941 783963 -181631279 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr6 784548 784599 -181630643 + AT_rich Low_complexity Low_complexity 1 51 0 200 273 0 0 chr6 785072 785127 -181630115 + CT-rich Low_complexity Low_complexity 3 57 0 318 243 111 62 chr6 785715 785958 -181629284 + L1ME4a LINE L1 5832 6086 -35 2277 83 14 0 chr6 787648 787938 -181627304 + AluSc SINE Alu 1 294 -15 243 221 26 39 chr6 788097 788174 -181627068 + MER8 DNA MER2_type 2 77 -162 28 86 0 0 chr6 788451 788521 -181626721 + AT_rich Low_complexity Low_complexity 1 70 0 2386 92 0 3 chr6 788522 788828 -181626414 + AluSq SINE Alu 1 305 -8 384 229 47 84 chr6 788944 789158 -181626084 + Charlie5 DNA MER1_type 2419 2624 0 2223 101 3 16 chr6 790692 791000 -181624242 - AluSx SINE Alu -8 304 1 273 299 133 88 chr6 791657 791883 -181623359 + L2 LINE L2 2849 3063 -250 2499 74 0 3 chr6 791883 792192 -181623050 - AluSc SINE Alu -1 308 1 273 299 133 88 chr6 792192 792387 -181622855 + L2 LINE L2 3063 3289 -24 2241 92 0 7 chr6 795190 795484 -181619758 + AluSg SINE Alu 1 292 -18 243 103 0 0 chr6 796113 796152 -181619090 + (CA)n Simple_repeat Simple_repeat 2 40 0 206 312 9 18 chr6 796153 796262 -181618980 + (TA)n Simple_repeat Simple_repeat 2 109 0 1913 146 3 0 chr6 796313 796601 -181618641 + AluSx SINE Alu 1 289 -23 476 306 135 5 chr6 796830 797052 -181618190 - L2 LINE L2 -886 2428 2178 1204 228 71 50 chr6 797103 797567 -181617675 - LTR42 LTR ERVL -20 475 2 211 263 165 45 chr6 802435 802568 -181612674 - MIR3 SINE MIR -56 152 4 2227 159 30 28 chr6 802601 803034 -181612208 - Tigger2a DNA MER2_type 0 434 1 316 235 29 73 chr6 803333 803469 -181611773 - L1ME4a LINE L1 0 6121 5992 411 251 102 21 chr6 803580 803815 -181611427 - L1ME4a LINE L1 -237 5884 5631 2925 3 0 0 chr6 804351 804664 -181610578 - AluYb8 SINE Alu -5 313 1 1455 172 74 16 chr6 805830 806308 -181608934 - L1MA7 LINE L1 -5 6295 5749 265 261 34 42 chr6 807459 807578 -181607664 - L1ME2 LINE L1 -227 5951 5834 449 283 135 74 chr6 807578 808576 -181606666 - L1MEd LINE L1 -2492 3637 2579 673 262 43 24 chr6 808610 808983 -181606259 - L1MEd LINE L1 -4882 1249 970 1096 121 0 0 chr6 809275 809424 -181605818 + AluSq/x SINE Alu 1 149 -164 369 176 0 0 chr6 810350 810418 -181604824 - Tigger5 DNA MER2_type 0 2323 2256 293 200 12 71 chr6 810414 810438 -181604804 + Tigger5 DNA MER2_type 2241 2265 -58 * 2245 103 3 0 chr6 810438 810738 -181604504 - AluSg1 SINE Alu -8 301 1 293 200 12 71 chr6 810738 810798 -181604444 + Tigger5 DNA MER2_type 2265 2320 -3 * 396 205 13 0 chr6 810798 810875 -181604367 - Tigger5 DNA MER2_type -2245 78 1 1373 236 110 6 chr6 811461 811952 -181603290 - L1ME2 LINE L1 0 6164 5623 610 244 146 18 chr6 812396 814139 -181601103 - L1ME2 LINE L1 -659 5507 3209 900 210 6 33 chr6 814157 814338 -181600904 - AluJo SINE Alu -24 288 113 461 223 103 29 chr6 814342 814584 -181600658 - L1ME2 LINE L1 -2945 3201 2942 436 329 48 18 chr6 814829 815057 -181600185 - HAL1b LINE L1 -756 592 358 297 68 0 0 chr6 815063 815107 -181600135 + (TC)n Simple_repeat Simple_repeat 1 44 0 297 323 60 39 chr6 815186 815418 -181599824 - HAL1 LINE L1 -1151 1356 1120 2027 143 20 64 chr6 816311 816703 -181598539 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr6 817610 817632 -181597610 + AT_rich Low_complexity Low_complexity 1 22 0 187 338 0 27 chr6 818169 818243 -181596999 + L2 LINE L2 2687 2758 -556 231 218 36 91 chr6 818308 818418 -181596824 + L2 LINE L2 2642 2745 -569 1696 194 0 10 chr6 818472 818771 -181596471 + MER2 DNA MER2_type 42 337 -8 21 0 0 0 chr6 821529 821550 -181593692 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr6 821674 821714 -181593528 + AT_rich Low_complexity Low_complexity 1 40 0 771 249 42 46 chr6 822509 822726 -181592516 - MIR SINE MIR -5 257 42 2478 78 3 0 chr6 822790 823097 -181592145 + AluSp SINE Alu 1 308 -5 343 293 44 79 chr6 823127 823356 -181591886 + L1ME2 LINE L1 5337 5557 -607 358 279 66 27 chr6 823417 823600 -181591642 + L1ME2 LINE L1 5618 5807 -314 24 53 0 0 chr6 823869 823907 -181591335 + AT_rich Low_complexity Low_complexity 1 38 0 264 314 95 7 chr6 823929 824066 -181591176 + L3 LINE CR1 327 475 -1102 418 259 53 35 chr6 824385 824555 -181590687 + L1ME LINE L1 138 310 -5895 300 253 62 41 chr6 824624 824770 -181590472 + L1ME LINE L1 1729 1877 -4519 744 315 27 10 chr6 824773 825065 -181590177 + L1ME LINE L1 3533 3829 -2386 505 94 10 83 chr6 825115 825244 -181589998 - L1PA8 LINE L1 0 6172 6082 664 183 0 0 chr6 825737 825841 -181589401 + FRAM SINE Alu 56 159 -17 1891 153 10 3 chr6 827702 828002 -181587240 + AluJb SINE Alu 1 302 -10 1276 199 101 136 chr6 831208 832239 -181583003 - L1MC5 LINE L1 -110 7851 6857 189 107 0 0 chr6 834278 834306 -181580936 + (GGGTG)n Simple_repeat Simple_repeat 5 32 0 206 192 0 39 chr6 834647 834699 -181580543 + CT-rich Low_complexity Low_complexity 2 51 0 264 267 89 30 chr6 835368 835503 -181579739 - MIR3 SINE MIR -27 181 39 624 222 90 21 chr6 836684 836873 -181578369 + L1ME2 LINE L1 5963 6164 0 21 71 0 0 chr6 838925 838967 -181576275 + AT_rich Low_complexity Low_complexity 1 42 0 371 254 123 0 chr6 841129 841259 -181573983 - MER63A DNA MER1_type -9 201 56 3541 47 0 0 chr6 841454 841859 -181573383 - L1PA5 LINE L1 -2 6152 5748 4956 40 2 0 chr6 841859 842478 -181572764 + L1P LINE L1 2831 3450 -2696 885 219 59 0 chr6 842478 842697 -181572545 + Tigger6 DNA MER2_type 1364 1595 -2 337 339 58 37 chr6 843739 843928 -181571314 + MIR SINE MIR 49 241 -21 229 338 90 7 chr6 844053 844198 -181571044 - L2 LINE L2 -1069 2245 2089 427 258 81 66 chr6 844209 844407 -181570835 + MER63A DNA MER1_type 1 201 -9 623 227 97 5 chr6 849141 849326 -181565916 - L1ME2 LINE L1 0 6164 5963 2052 133 3 0 chr6 850029 850359 -181564883 + AluSx SINE Alu 1 312 0 2381 91 0 0 chr6 850433 850729 -181564513 + AluSg SINE Alu 1 296 -14 12843 125 26 19 chr6 851455 853175 -181562067 + Tigger1 DNA MER2_type 7 1743 -675 2140 136 0 13 chr6 853175 853491 -181561751 + AluJo SINE Alu 1 312 0 12843 125 26 19 chr6 853491 853799 -181561443 + Tigger1 DNA MER2_type 1743 2048 -370 187 227 227 0 chr6 857036 857102 -181558140 - MIR SINE MIR -54 208 128 2074 107 30 13 chr6 857621 857920 -181557322 - AluSp SINE Alu -9 304 1 2201 134 9 166 chr6 858138 858688 -181556554 + LTR12 LTR ERV1 1 464 -250 300 284 90 26 chr6 858848 859003 -181556239 + MIR3 SINE MIR 36 200 -8 1645 160 52 4 chr6 859544 859812 -181555430 - AluJb SINE Alu -31 281 1 1044 204 53 49 chr6 864877 865162 -181550080 + L1MB8 LINE L1 5887 6172 -6 228 327 51 32 chr6 865413 865569 -181549673 + MIR3 SINE MIR 43 201 -7 22 35 0 0 chr6 865787 865816 -181549426 + AT_rich Low_complexity Low_complexity 1 29 0 35 41 0 0 chr6 868050 868099 -181547143 + AT_rich Low_complexity Low_complexity 1 49 0 866 293 107 3 chr6 868346 868711 -181546531 - L1ME2 LINE L1 -277 5885 5483 455 173 5 38 chr6 868737 868922 -181546320 + CT-rich Low_complexity Low_complexity 1 179 0 2428 97 0 0 chr6 868927 869236 -181546006 - AluSq SINE Alu -4 309 1 212 179 0 0 chr6 869299 869338 -181545904 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 201 261 0 0 chr6 869697 869785 -181545457 + A-rich Low_complexity Low_complexity 1 88 0 231 289 12 12 chr6 870475 870558 -181544684 + L1MC/D LINE L1 5578 5660 -699 2059 108 10 51 chr6 870817 871131 -181544111 + AluSg SINE Alu 1 301 -9 269 198 42 0 chr6 871549 871645 -181543597 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 562 75 47 0 chr6 871661 871767 -181543475 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 498 140 26 18 chr6 871817 871931 -181543311 + CT-rich Low_complexity Low_complexity 1 115 0 443 256 32 13 chr6 872183 872339 -181542903 - HAL1b LINE L1 -893 455 297 2288 89 0 0 chr6 873715 874007 -181541235 + AluY SINE Alu 1 292 -19 291 253 208 25 chr6 874604 874806 -181540436 - L1M4 LINE L1 -1736 4410 4172 209 359 8 31 chr6 875963 876091 -181539151 - MIR3 SINE MIR -12 196 72 2247 117 0 0 chr6 877167 877476 -181537766 + AluSc SINE Alu 1 309 0 318 306 32 38 chr6 877985 878163 -181537079 - MLT1J LTR MaLR -55 456 280 1527 209 26 10 chr6 878163 878469 -181536773 - MER44D DNA MER2_type 0 609 29 384 308 62 16 chr6 878707 878979 -181536263 - MLT1I LTR MaLR -20 389 82 2171 100 0 4 chr6 881083 881383 -181533859 - AluSc SINE Alu 0 299 1 378 311 108 0 chr6 881413 881580 -181533662 - L1ME LINE L1 -727 5439 5255 3515 107 22 141 chr6 881598 882066 -181533176 - Tigger1 DNA MER2_type 0 2418 2073 1750 121 0 89 chr6 882066 882379 -181532863 - AluSx SINE Alu -27 285 1 3515 107 22 141 chr6 882379 882670 -181532572 - Tigger1 DNA MER2_type -345 2073 1749 518 29 0 14 chr6 883454 883523 -181531719 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 379 271 133 23 chr6 884976 885278 -181529964 + LTR33 LTR ERVL 19 353 -168 369 284 76 18 chr6 885556 885831 -181529411 + L1M4 LINE L1 2709 2999 -3147 1391 274 74 35 chr6 886045 886609 -181528633 + ERVL LTR ERVL 1938 2494 -2991 1140 76 12 76 chr6 886669 886840 -181528402 - AluY SINE Alu -17 294 135 227 77 0 26 chr6 886842 886881 -181528361 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 15071 56 3 8 chr6 886883 889527 -181525715 - L1PA5 LINE L1 -26 6128 3499 896 85 119 0 chr6 889543 889661 -181525581 - AluY SINE Alu -179 132 1 842 214 50 79 chr6 890365 890645 -181524597 + L1M4 LINE L1 513 784 -5758 1018 308 60 31 chr6 891351 891471 -181523771 + LTR33 LTR ERVL 19 134 -387 2335 220 25 35 chr6 891471 892021 -181523221 + LTR55 LTR ERV 2 546 -2 1018 308 60 31 chr6 892021 892315 -181522927 + LTR33 LTR ERVL 134 445 -76 1056 322 55 34 chr6 892390 892971 -181522271 - ERVL LTR ERVL -2070 3694 3102 209 214 112 56 chr6 892971 893060 -181522182 - L2 LINE L2 -2042 1272 1179 342 224 31 68 chr6 893098 893290 -181521952 - L1M4c LINE L1 -4026 2358 2174 2118 107 0 3 chr6 896607 896897 -181518345 + AluSx SINE Alu 13 301 -11 483 261 96 6 chr6 897801 897958 -181517284 + MER5B DNA MER1_type 3 173 -5 312 27 0 0 chr6 898870 898907 -181516335 + (CA)n Simple_repeat Simple_repeat 2 38 0 2260 84 18 0 chr6 898921 899206 -181516036 + AluSc SINE Alu 1 290 -19 2397 179 63 28 chr6 899410 899946 -181515296 + MER74A LTR ERVL 3 557 -1 366 23 0 0 chr6 899984 900027 -181515215 + (TG)n Simple_repeat Simple_repeat 2 44 0 869 193 64 5 chr6 900176 900363 -181514879 - L1MD2 LINE L1 -1 6358 6161 363 44 0 0 chr6 900363 900408 -181514834 + (TG)n Simple_repeat Simple_repeat 1 45 0 1976 118 3 0 chr6 900763 901050 -181514192 + L1PA10 LINE L1 4703 4990 -1156 7098 86 9 0 chr6 901055 902084 -181513158 + L1PA10 LINE L1 5105 6159 -9 770 326 8 4 chr6 902118 902360 -181512882 + MIR SINE MIR 20 262 0 988 120 14 0 chr6 902715 902857 -181512385 + THE1C LTR MaLR 1 144 -231 450 36 0 0 chr6 902906 902962 -181512280 + (A)n Simple_repeat Simple_repeat 1 56 0 1692 229 31 52 chr6 904583 905143 -181510099 - L2 LINE L2 -3 3310 2777 2170 94 3 3 chr6 905143 905430 -181509812 - AluSg SINE Alu -23 287 1 1692 229 31 52 chr6 905430 905498 -181509744 - L2 LINE L2 -536 2777 2709 589 224 175 6 chr6 906409 906592 -181508650 + MIR SINE MIR 37 250 -12 1363 242 58 22 chr6 909140 909500 -181505742 - MLT1A2 LTR MaLR -1 373 1 266 332 111 36 chr6 911438 911718 -181503524 - L2 LINE L2 -58 3214 2914 468 272 28 61 chr6 912251 912431 -181502811 - MER5A DNA MER1_type 0 189 16 243 346 39 0 chr6 912524 912628 -181502614 - MIR SINE MIR -120 142 35 2657 134 136 86 chr6 913259 913826 -181501416 - LTR26E LTR ERV1 -27 595 1 230 368 47 74 chr6 914179 914437 -181500805 - L2 LINE L2 0 3272 3022 296 150 27 16 chr6 914637 914710 -181500532 - L1MC2 LINE L1 0 6333 6256 4783 158 34 19 chr6 914713 915597 -181499645 + L1MC1 LINE L1 5319 6215 -118 4030 128 16 19 chr6 916326 916959 -181498283 + MER41B LTR ERV1 1 631 -4 1164 179 24 8 chr6 917622 917873 -181497369 + L1MB7 LINE L1 5911 6165 -19 507 174 24 0 chr6 917922 918049 -181497193 + L1M4 LINE L1 5202 5331 -832 365 286 45 9 chr6 918056 918168 -181497074 - L1MC4 LINE L1 -1341 6701 6586 358 291 0 0 chr6 918162 918241 -181497001 + L1MC4 LINE L1 6614 6692 -1350 * 674 45 0 0 chr6 918242 918330 -181496912 + L1MC/D LINE L1 5360 5447 -897 1654 161 42 98 chr6 918389 918799 -181496443 - MLT1B LTR MaLR -3 387 1 668 119 198 0 chr6 918799 918925 -181496317 + L1MC/D LINE L1 5617 5767 -577 1619 223 95 63 chr6 920503 921028 -181494214 - MLT1F LTR MaLR 0 542 1 302 0 26 0 chr6 923574 923612 -181491630 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3095 147 106 19 chr6 923841 924433 -181490809 + MER73 LTR ERVL 1 644 0 13984 75 3 8 chr6 924658 924848 -181490394 + L1PA7 LINE L1 3491 3680 -2474 231 36 0 0 chr6 924848 924876 -181490366 + (CA)n Simple_repeat Simple_repeat 1 28 0 13984 75 3 8 chr6 924876 925846 -181489396 + L1PA7 LINE L1 3680 4653 -1501 2781 6 0 9 chr6 925846 926162 -181489080 + AluYb8 SINE Alu 1 313 -5 13984 75 3 8 chr6 926162 927676 -181487566 + L1PA7 LINE L1 4653 6149 -5 1687 186 73 35 chr6 927791 928162 -181487080 + MLT1B LTR MaLR 6 390 0 444 224 154 21 chr6 928185 928328 -181486914 + MLT1H LTR MaLR 11 172 -377 298 286 214 0 chr6 928429 928555 -181486687 + MLT1H LTR MaLR 392 544 -5 192 389 18 9 chr6 930953 931066 -181484176 - MIR SINE MIR -74 134 21 2465 53 0 0 chr6 931353 931655 -181483587 - AluY SINE Alu -9 302 1 26 30 0 0 chr6 931882 931915 -181483327 + AT_rich Low_complexity Low_complexity 1 33 0 540 126 0 0 chr6 932249 932336 -181482906 + (TCCA)n Simple_repeat Simple_repeat 2 88 0 920 143 6 0 chr6 932347 932515 -181482727 + (TCCA)n Simple_repeat Simple_repeat 2 170 0 579 213 0 0 chr6 932526 932667 -181482575 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 819 183 0 0 chr6 932678 932853 -181482389 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 413 264 0 85 chr6 932856 932985 -181482257 - L2 LINE L2 -5 3308 3191 208 260 0 0 chr6 933673 933723 -181481519 + L2 LINE L2 3258 3307 -6 2924 156 112 55 chr6 934494 934568 -181480674 - LTR8A LTR ERV1 0 727 659 1971 75 39 29 chr6 934568 934869 -181480373 + AluY SINE Alu 1 304 0 2924 156 112 55 chr6 934869 935481 -181479761 - LTR8A LTR ERV1 -68 659 1 249 33 0 0 chr6 936113 936143 -181479099 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr6 939267 939298 -181475944 + AT_rich Low_complexity Low_complexity 1 31 0 552 194 0 0 chr6 939314 939412 -181475830 + FLAM_C SINE Alu 26 123 -20 2107 94 3 23 chr6 940075 940382 -181474860 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr6 941992 942020 -181473222 + AT_rich Low_complexity Low_complexity 1 28 0 2182 88 3 10 chr6 942133 942429 -181472813 - AluSp SINE Alu -19 294 1 2500 34 0 0 chr6 942740 943034 -181472208 + AluY SINE Alu 1 294 -17 263 342 221 9 chr6 943126 943348 -181471894 - L3 LINE CR1 -5 1572 1304 241 263 288 0 chr6 944809 944889 -181470353 - L2 LINE L2 0 3313 3211 2082 201 21 31 chr6 945305 945787 -181469455 - L1MB7 LINE L1 -7 6177 5701 1918 159 31 3 chr6 945794 946121 -181469121 + Tigger4(Zombi) DNA MER2_type 1 336 -2395 1938 100 0 25 chr6 946123 946404 -181468838 + Tigger4(Zombi) DNA MER2_type 2457 2730 -1 2347 157 54 25 chr6 946405 946881 -181468361 - L1MB7 LINE L1 -489 5689 5196 2117 114 7 0 chr6 946881 947180 -181468062 - AluSx SINE Alu -9 303 3 2347 157 54 25 chr6 947180 947265 -181467977 - L1MB7 LINE L1 -982 5196 5115 2179 138 62 8 chr6 948118 948487 -181466755 + MLT1B LTR MaLR 1 389 -1 276 288 129 30 chr6 948649 948833 -181466409 - MIR SINE MIR -50 212 14 22 35 0 0 chr6 949069 949098 -181466144 + AT_rich Low_complexity Low_complexity 1 29 0 267 214 36 12 chr6 950340 950424 -181464818 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 231 309 12 24 chr6 953853 953937 -181461305 + MIR3 SINE MIR 115 197 -11 313 262 87 10 chr6 953941 954044 -181461198 + L1MC4 LINE L1 7928 8038 -4 3063 196 97 68 chr6 954148 954987 -181460255 + MER21B LTR ERV1 1 863 0 190 229 0 0 chr6 955327 955362 -181459880 - L2 LINE L2 -1433 1881 1847 197 244 37 6 chr6 955380 955448 -181459794 - MIR SINE MIR -56 152 81 249 33 0 0 chr6 956221 956251 -181458991 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr6 956849 956884 -181458358 + AT_rich Low_complexity Low_complexity 1 35 0 279 339 42 36 chr6 958276 958444 -181456798 - MIR SINE MIR -73 189 21 180 0 0 0 chr6 960586 960606 -181454636 + (CATA)n Simple_repeat Simple_repeat 4 23 0 874 189 83 152 chr6 960667 960871 -181454371 - MLT1A2 LTR MaLR -8 382 218 369 0 0 0 chr6 960871 960912 -181454330 + (TG)n Simple_repeat Simple_repeat 1 41 0 874 189 83 152 chr6 960912 961115 -181454127 - MLT1A2 LTR MaLR -172 218 3 1869 132 0 4 chr6 961220 961564 -181453678 - AluY SINE Alu 0 343 1 1779 172 67 6 chr6 961924 962284 -181452958 - L1MB3 LINE L1 -9 6174 5793 644 178 159 25 chr6 962312 962475 -181452767 + MER58A DNA MER1_type 40 224 0 23 54 0 0 chr6 963447 963484 -181451758 + AT_rich Low_complexity Low_complexity 1 37 0 1103 191 9 43 chr6 964161 964392 -181450850 + MER58A DNA MER1_type 2 224 0 1971 121 0 0 chr6 964662 964972 -181450270 - AluSx SINE Alu 0 310 1 272 313 0 12 chr6 965213 965293 -181449949 + MIR SINE MIR 23 101 -107 269 237 97 72 chr6 965631 965814 -181449428 - MLT1J2 LTR MaLR -215 231 44 552 258 129 15 chr6 966346 966610 -181448632 + LTR50 LTR ERVL 502 795 0 225 291 80 117 chr6 967319 967532 -181447710 + L2 LINE L2 3063 3267 -5 264 214 0 43 chr6 969313 969383 -181445859 + (CACCAT)n Simple_repeat Simple_repeat 5 71 0 2137 114 0 13 chr6 969568 969876 -181445366 - AluSg SINE Alu -2 308 5 1505 123 35 15 chr6 969947 970207 -181445035 + L1MA5A LINE L1 6030 6294 -3 324 211 0 0 chr6 971969 972026 -181443216 - FRAM/FAM SINE Alu -118 57 1 208 318 34 23 chr6 972755 972843 -181442399 + MIR SINE MIR 36 124 -84 195 297 122 0 chr6 972874 972948 -181442294 - L2 LINE L2 -32 3281 3199 623 89 0 10 chr6 972951 973052 -181442190 + (GA)n Simple_repeat Simple_repeat 1 100 0 547 250 128 0 chr6 973209 973397 -181441845 - MER5C DNA MER1_type 0 324 113 268 229 0 48 chr6 973409 973492 -181441750 + CT-rich Low_complexity Low_complexity 4 82 0 3107 254 155 44 chr6 973601 974394 -181440848 + L1MC4 LINE L1 6469 7172 -870 2207 117 43 81 chr6 974394 974781 -181440461 + MSTB LTR MaLR 1 401 -25 314 0 49 0 chr6 974781 974822 -181440420 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1755 122 4 11 chr6 974827 975105 -181440137 - AluSq SINE Alu -37 276 1 2144 121 0 3 chr6 975112 975426 -181439816 - AluSq SINE Alu 0 313 1 2207 117 43 81 chr6 975426 975467 -181439775 + MSTB LTR MaLR 411 426 0 3107 254 155 44 chr6 975467 976089 -181439153 + L1MC4 LINE L1 7172 8042 0 270 104 0 62 chr6 976091 976139 -181439103 - MER5C DNA MER1_type -201 123 79 1372 166 22 25 chr6 977347 977625 -181437617 - AluJo SINE Alu -25 287 11 677 199 46 7 chr6 977903 978054 -181437188 - MER45A DNA AcHobo 0 178 22 2005 87 11 7 chr6 978098 978374 -181436868 + AluSx SINE Alu 24 300 -12 940 286 74 25 chr6 978995 979428 -181435814 + L1ME3A LINE L1 5513 5966 -204 332 45 76 0 chr6 979556 979622 -181435620 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 309 343 63 58 chr6 979622 980004 -181435238 - L1MEd LINE L1 -4935 1184 801 612 95 71 0 chr6 980004 980172 -181435070 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 528 273 122 65 chr6 980426 980811 -181434431 - MLT1J LTR MaLR 0 511 105 341 252 52 60 chr6 981158 981625 -181433617 - L1MC5 LINE L1 -183 8058 1922 303 201 62 113 chr6 981618 981812 -181433430 + L1MC5 LINE L1 7572 7755 -206 * 326 244 26 52 chr6 981763 981878 -181433364 - L1MC5 LINE L1 -4335 2091 1980 * 356 239 35 63 chr6 981845 981987 -181433255 - L1MC5 LINE L1 -4335 2091 1954 1247 244 58 22 chr6 984014 984374 -181430868 + MLT1A2 LTR MaLR 1 373 -1 605 229 175 6 chr6 986372 986555 -181428687 - MIR SINE MIR -12 250 37 231 36 0 0 chr6 987537 987565 -181427677 + (GA)n Simple_repeat Simple_repeat 2 29 0 182 326 0 0 chr6 987617 987666 -181427576 + L2 LINE L2 3265 3313 0 234 231 0 0 chr6 988272 988324 -181426918 + C-rich Low_complexity Low_complexity 1 52 0 245 309 99 66 chr6 988746 988898 -181426344 - L2 LINE L2 -5 3267 3111 391 316 56 56 chr6 989012 989243 -181425999 - MIR SINE MIR -28 234 4 1881 92 0 11 chr6 989556 989817 -181425425 - AluSg SINE Alu -14 296 39 1961 114 0 46 chr6 990834 991141 -181424101 - AluSg SINE Alu -17 293 1 3380 108 124 2 chr6 991185 991703 -181423539 + LTR12 LTR ERV1 1 581 -133 275 353 0 20 chr6 991991 992093 -181423149 + MIR SINE MIR 84 183 -79 2179 138 80 31 chr6 992213 992626 -181422616 + Tigger2a DNA MER2_type 2 434 0 315 278 114 102 chr6 992699 993033 -181422209 - L2 LINE L2 -1 3271 2934 2222 191 33 9 chr6 993195 993645 -181421597 - LOR1b LTR ERV1 0 461 1 4433 108 68 85 chr6 995572 996371 -181418871 + LTR1 LTR ERV1 1 785 0 16129 155 61 27 chr6 996371 999291 -181415951 + HUERS-P2 LTR ERV1 1 3088 0 4134 121 74 74 chr6 999334 1000119 -181415123 + LTR1 LTR ERV1 1 785 0 2175 228 34 15 chr6 1001293 1001829 -181413413 + L1MC3 LINE L1 7240 7785 0 667 310 31 31 chr6 1001879 1002105 -181413137 - MIR SINE MIR -1 261 36 322 290 140 11 chr6 1002259 1002445 -181412797 + L1ME3 LINE L1 416 625 -6096 505 297 76 42 chr6 1003008 1003458 -181411784 + L1ME3 LINE L1 1314 1747 -4793 2701 110 0 3 chr6 1003458 1003823 -181411419 - THE1B LTR MaLR 0 364 1 505 297 76 42 chr6 1003823 1003909 -181411333 + L1ME3 LINE L1 1747 1872 -4668 5094 45 0 0 chr6 1003909 1004513 -181410729 + L1PA5 LINE L1 5550 6153 -1 505 297 76 42 chr6 1004513 1004528 -181410714 + L1ME3 LINE L1 1872 1885 -4655 * 1819 266 96 41 chr6 1004524 1005028 -181410214 + L1ME3 LINE L1 4147 4622 -1934 2335 54 0 7 chr6 1005028 1005325 -181409917 + AluY SINE Alu 1 295 -16 1819 266 96 41 chr6 1005325 1005869 -181409373 + L1ME3 LINE L1 4622 6526 -30 354 289 86 13 chr6 1005940 1006241 -181409001 + L1ME LINE L1 3316 3638 -2902 22 0 0 0 chr6 1006754 1006776 -181408466 + AT_rich Low_complexity Low_complexity 1 22 0 6124 43 1 0 chr6 1006966 1007690 -181407552 - L1PA7 LINE L1 -11 6143 5419 1252 182 26 45 chr6 1007690 1007959 -181407283 - AluJb SINE Alu -35 277 14 427 274 65 38 chr6 1008012 1008198 -181407044 + L1ME LINE L1 5596 5786 -754 288 257 105 66 chr6 1008394 1008546 -181406696 + L1ME LINE L1 5940 6097 -467 234 0 0 0 chr6 1008888 1008914 -181406328 + (A)n Simple_repeat Simple_repeat 1 26 0 237 327 106 10 chr6 1009436 1009540 -181405702 - L2 LINE L2 -8 3264 3151 382 323 158 30 chr6 1009771 1009935 -181405307 - MER91A DNA MER1_type -11 185 1 1621 216 8 14 chr6 1011374 1011730 -181403512 - L1MC1 LINE L1 -1 6332 5979 238 170 19 19 chr6 1011770 1011823 -181403419 - L1MC1 LINE L1 -360 5984 5932 193 260 188 21 chr6 1012347 1012443 -181402799 + MIR SINE MIR 38 149 -59 476 163 8 24 chr6 1012493 1012616 -181402626 + CT-rich Low_complexity Low_complexity 3 123 0 647 193 6 28 chr6 1012694 1012875 -181402367 + CT-rich Low_complexity Low_complexity 2 178 0 384 284 28 74 chr6 1013365 1013541 -181401701 - MIR3 SINE MIR -25 183 16 1550 180 82 0 chr6 1013578 1013945 -181401297 + MER74A LTR ERVL 132 528 -30 363 277 67 8 chr6 1014528 1014647 -181400595 + MIR SINE MIR 21 146 -116 211 350 50 0 chr6 1014651 1014751 -181400491 - MIR SINE MIR 0 262 158 405 247 101 30 chr6 1016520 1016704 -181398538 + MIR SINE MIR 1 185 -63 225 213 0 49 chr6 1017065 1017126 -181398116 + MIR SINE MIR 89 146 -62 772 189 23 34 chr6 1017178 1017233 -181398009 - MIR SINE MIR -37 225 171 2539 150 61 0 chr6 1017233 1017640 -181397602 - MSTB1 LTR MaLR 0 432 1 772 189 23 34 chr6 1017640 1017759 -181397483 - MIR SINE MIR -91 171 53 268 234 35 127 chr6 1019011 1019208 -181396034 - MER112 DNA MER1_type -48 212 34 2085 110 0 7 chr6 1019208 1019489 -181395753 + AluY SINE Alu 1 279 -32 186 233 0 0 chr6 1020953 1021013 -181394229 + (TA)n Simple_repeat Simple_repeat 1 60 0 58 54 0 0 chr6 1021021 1021114 -181394128 + AT_rich Low_complexity Low_complexity 1 93 0 512 219 47 72 chr6 1021121 1021399 -181393843 - L1MC5 LINE L1 -184 7777 7507 911 258 30 8 chr6 1021417 1021684 -181393558 - MER33 DNA MER1_type -30 294 22 555 308 120 23 chr6 1022179 1022572 -181392670 - L2 LINE L2 0 3313 2883 3526 296 116 16 chr6 1022622 1024368 -181390874 - L2 LINE L2 -1076 2238 319 1121 152 148 9 chr6 1024418 1024648 -181390594 - L1MB8 LINE L1 -60 6118 5857 21 36 0 0 chr6 1024951 1024979 -181390263 + AT_rich Low_complexity Low_complexity 1 28 0 261 324 47 7 chr6 1025327 1025475 -181389767 + L1ME4a LINE L1 5757 5910 -211 203 83 0 56 chr6 1026602 1026638 -181388604 - L2 LINE L2 0 3272 3239 378 262 92 39 chr6 1027782 1028011 -181387231 - L1ME4a LINE L1 -252 5869 5629 1552 255 74 4 chr6 1030483 1030954 -181384288 + MLT1D LTR MaLR 2 505 0 2255 101 0 0 chr6 1031602 1031890 -181383352 + AluSc SINE Alu 1 288 -21 212 357 0 0 chr6 1032127 1032197 -181383045 + MIR SINE MIR 45 114 -148 388 323 52 13 chr6 1032388 1032543 -181382699 - MIR SINE MIR -100 162 2 383 333 78 16 chr6 1033405 1033597 -181381645 - MIR SINE MIR -16 246 43 857 189 111 75 chr6 1034694 1035000 -181380242 + MER33 DNA MER1_type 7 323 -1 180 77 0 0 chr6 1039015 1039041 -181376201 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 279 245 128 21 chr6 1039938 1040126 -181375116 + L1ME4a LINE L1 5742 5949 -172 189 274 16 0 chr6 1041506 1041568 -181373674 + MIR3 SINE MIR 103 165 -43 1771 151 15 8 chr6 1041726 1041991 -181373251 - AluJb SINE Alu -18 294 28 388 306 141 15 chr6 1042655 1042854 -181372388 + HAL1 LINE L1 286 509 -1998 1785 159 32 155 chr6 1043291 1043845 -181371397 + MER66B LTR ERV1 1 486 0 248 289 39 0 chr6 1043884 1043988 -181371254 + HAL1 LINE L1 991 1098 -1409 1017 193 133 9 chr6 1043989 1044222 -181371020 + L1M4c LINE L1 3 264 -6120 2304 80 3 13 chr6 1044589 1044888 -181370354 - AluY SINE Alu -15 296 1 1108 263 117 52 chr6 1045359 1045949 -181369293 - HAL1 LINE L1 -644 1863 1236 2278 152 49 0 chr6 1046668 1047037 -181368205 - MLT1B LTR MaLR -3 387 1 549 211 75 25 chr6 1047551 1047712 -181367530 - MER5B DNA MER1_type -5 173 5 204 267 17 17 chr6 1047807 1047867 -181367375 + L2 LINE L2 3138 3197 -75 1645 161 46 14 chr6 1048049 1048329 -181366913 + AluJo SINE Alu 1 289 -23 29 28 0 0 chr6 1048647 1048683 -181366559 + AT_rich Low_complexity Low_complexity 1 36 0 2706 97 11 0 chr6 1048850 1049211 -181366031 - L1PB1 LINE L1 -5 6146 5782 239 77 0 26 chr6 1049211 1049250 -181365992 + (TA)n Simple_repeat Simple_repeat 1 38 0 298 228 65 11 chr6 1049258 1049350 -181365892 - L1MC4 LINE L1 -1343 6699 6603 228 268 0 31 chr6 1049355 1049452 -181365790 - L1MC4 LINE L1 -1340 6702 6609 5799 161 8 26 chr6 1049491 1051197 -181364045 - L1P5 LINE L1 -360 5791 4121 9331 152 48 8 chr6 1051225 1052113 -181363129 - L1PBa LINE L1 -2508 4354 3503 2485 91 0 0 chr6 1052113 1052421 -181362821 - AluY SINE Alu -1 310 3 9331 152 48 8 chr6 1052421 1054333 -181360909 - L1PBa LINE L1 -3359 3503 1441 2607 141 19 2 chr6 1054330 1054748 -181360494 - L1PBa LINE L1 -6436 427 3 * 2235 92 30 0 chr6 1057372 1057667 -181357575 - AluSq SINE Alu -9 304 1 525 287 106 11 chr6 1057723 1057911 -181357331 - MIR SINE MIR -27 235 30 276 308 115 20 chr6 1057968 1058160 -181357082 + L3b LINE CR1 1123 1346 -237 1661 129 47 8 chr6 1058160 1058415 -181356827 + AluSx SINE Alu 39 303 -9 276 308 115 20 chr6 1058415 1058475 -181356767 + L3b LINE CR1 1346 1399 -184 2458 55 0 19 chr6 1058515 1058822 -181356420 + AluY SINE Alu 1 301 -10 15722 98 3 2 chr6 1060189 1063083 -181352159 - L1PA8 LINE L1 0 6172 3275 1513 209 6 3 chr6 1063526 1063852 -181351390 - L1M4 LINE L1 -1034 5112 4786 532 184 9 9 chr6 1063855 1063969 -181351273 + L1MC/D LINE L1 2297 2410 -3974 311 200 12 12 chr6 1064110 1064195 -181351047 + L1MC/D LINE L1 2474 2558 -3824 2894 233 109 23 chr6 1064225 1064558 -181350684 + L1MC/D LINE L1 2696 2999 -3383 2945 149 2 7 chr6 1064558 1064988 -181350254 - MSTA LTR MaLR 0 428 1 2894 233 109 23 chr6 1064988 1065684 -181349558 + L1MC/D LINE L1 2999 3813 -2569 1188 96 0 0 chr6 1065684 1065830 -181349412 + AluY SINE Alu 1 146 -165 1354 188 49 62 chr6 1065830 1066154 -181349088 + THE1C LTR MaLR 56 375 0 4575 212 17 18 chr6 1066154 1067368 -181347874 + L1MC/D LINE L1 4363 5589 -793 261 230 50 50 chr6 1067584 1067684 -181347558 + L1MC/D LINE L1 6024 6123 -1921 630 294 61 62 chr6 1067937 1068953 -181346289 + L1ME3A LINE L1 4931 5927 -243 462 155 54 0 chr6 1069046 1069214 -181346028 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 212 158 18 0 chr6 1069235 1069292 -181345950 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 556 163 29 6 chr6 1069322 1069494 -181345748 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 1023 257 75 18 chr6 1069965 1070354 -181344888 - LTR16A LTR ERVL 0 450 40 1823 182 28 23 chr6 1070944 1071379 -181343863 + L1MB7 LINE L1 5748 6184 0 203 218 36 0 chr6 1071880 1071935 -181343307 + L2 LINE L2 3216 3272 0 485 239 158 16 chr6 1072222 1072406 -181342836 - MIR SINE MIR -6 256 47 1540 194 56 48 chr6 1073042 1073419 -181341823 - MLT1B LTR MaLR -8 382 3 3204 176 125 3 chr6 1073651 1074315 -181340927 - MER49 LTR ERV1 0 923 179 300 27 0 0 chr6 1075660 1075697 -181339545 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 421 234 71 26 chr6 1078051 1078238 -181337004 - L1MC4a LINE L1 0 7995 7623 491 217 11 11 chr6 1078253 1078433 -181336809 + CT-rich Low_complexity Low_complexity 1 180 0 1622 121 0 0 chr6 1079815 1080039 -181335203 - AluSg/x SINE Alu -4 308 85 339 78 0 0 chr6 1080222 1080273 -181334969 + (CA)n Simple_repeat Simple_repeat 1 51 0 1293 245 233 70 chr6 1080848 1081788 -181333454 + L1MC4 LINE L1 6716 7808 0 1423 121 9 23 chr6 1081983 1082198 -181333044 + AluJo SINE Alu 58 269 -43 398 305 34 51 chr6 1083914 1084091 -181331151 - MIR3 SINE MIR -2 206 33 198 0 0 0 chr6 1084256 1084278 -181330964 + (CA)n Simple_repeat Simple_repeat 2 23 0 4024 163 40 19 chr6 1084278 1085039 -181330203 - L1MB3 LINE L1 -27 6156 5377 350 185 12 0 chr6 1085669 1085750 -181329492 + CT-rich Low_complexity Low_complexity 4 85 0 1737 209 57 27 chr6 1087049 1087489 -181327753 - MLT1D LTR MaLR -2 503 51 270 0 0 0 chr6 1087504 1087534 -181327708 + (TG)n Simple_repeat Simple_repeat 1 30 0 1117 226 66 8 chr6 1089594 1089851 -181325391 + MLT1A1 LTR MaLR 70 341 -24 1394 119 0 0 chr6 1089851 1090053 -181325189 - L1PA8 LINE L1 -867 5279 5078 6786 72 7 9 chr6 1090053 1090946 -181324296 + L1PA8 LINE L1 5276 6172 0 262 224 0 0 chr6 1090981 1091030 -181324212 + MLT1A1 LTR MaLR 324 372 -2 21 0 0 0 chr6 1091459 1091480 -181323762 + AT_rich Low_complexity Low_complexity 1 21 0 233 275 76 64 chr6 1092215 1092386 -181322856 - MER5B DNA MER1_type -2 176 4 441 270 42 46 chr6 1092396 1092633 -181322609 + MIR SINE MIR 19 261 -1 298 329 90 26 chr6 1094089 1094244 -181320998 - L2 LINE L2 0 3272 3108 365 288 79 10 chr6 1094367 1094552 -181320690 + MIR SINE MIR 12 200 -62 247 269 15 0 chr6 1095066 1095133 -181320109 - MIR3 SINE MIR -54 154 87 422 299 201 11 chr6 1095136 1095504 -181319738 - LTR16B LTR ERVL -24 440 3 738 324 108 21 chr6 1095937 1096562 -181318680 - ERVL LTR ERVL -2327 3437 2727 546 92 11 59 chr6 1096610 1096710 -181318532 - LTR12 LTR ERV1 0 714 481 294 198 66 22 chr6 1096712 1096803 -181318439 - LTR30 LTR ERV1 -80 642 548 1067 119 37 107 chr6 1096804 1097048 -181318194 - LTR12 LTR ERV1 -435 279 53 238 250 0 0 chr6 1097048 1097100 -181318142 - LTR30 LTR ERV1 -670 52 1 1535 306 88 36 chr6 1097164 1098020 -181317222 - ERVL LTR ERVL -2406 2590 1691 523 365 48 22 chr6 1098690 1099188 -181316054 - ERVL LTR ERVL -4483 513 3 366 318 16 0 chr6 1100794 1100923 -181314319 + MER63A DNA MER1_type 63 193 -17 957 149 0 0 chr6 1102834 1103009 -181312233 + (GGGA)n Simple_repeat Simple_repeat 4 178 0 399 296 30 23 chr6 1103078 1103210 -181312032 + L2 LINE L2 3139 3271 -1 1415 186 164 0 chr6 1104458 1104770 -181310472 + MSTB LTR MaLR 16 378 -48 304 326 44 62 chr6 1105162 1105389 -181309853 + HAL1b LINE L1 1 223 -1125 24 24 0 24 chr6 1105405 1105425 -181309817 + AT_rich Low_complexity Low_complexity 1 20 -21 2916 19 0 0 chr6 1105425 1105743 -181309499 + AluYb8 SINE Alu 1 318 0 24 24 0 24 chr6 1105743 1105764 -181309478 + AT_rich Low_complexity Low_complexity 20 41 0 461 287 72 32 chr6 1105764 1106015 -181309227 + HAL1b LINE L1 232 492 -856 241 230 70 30 chr6 1106024 1106124 -181309118 + HAL1b LINE L1 634 737 -611 5341 202 49 16 chr6 1106336 1107607 -181307635 - L1M3 LINE L1 -622 5558 4219 2405 85 0 0 chr6 1107607 1107900 -181307342 - AluY SINE Alu -12 299 7 5341 202 49 16 chr6 1107900 1108096 -181307146 - L1M3 LINE L1 -1961 4219 4031 215 152 22 0 chr6 1108684 1108730 -181306512 + (TG)n Simple_repeat Simple_repeat 2 48 0 1934 264 34 21 chr6 1108747 1109358 -181305884 + L1MC4a LINE L1 5284 5902 -1906 2167 121 0 13 chr6 1109492 1109799 -181305443 - AluSx SINE Alu -9 303 1 22 35 0 0 chr6 1109819 1109848 -181305394 + AT_rich Low_complexity Low_complexity 1 29 0 420 217 65 65 chr6 1110381 1110519 -181304723 - MER112 DNA MER1_type -7 253 116 215 314 59 85 chr6 1110562 1110680 -181304562 - L2 LINE L2 -36 3236 3122 2178 105 21 0 chr6 1112298 1112584 -181302658 + AluSg SINE Alu 1 292 -18 234 0 0 0 chr6 1112706 1112732 -181302510 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr6 1113935 1113962 -181301280 + (TG)n Simple_repeat Simple_repeat 2 28 0 432 188 89 0 chr6 1115515 1115616 -181299626 - L1MB2 LINE L1 0 6171 6062 2825 147 31 4 chr6 1116303 1116785 -181298457 - L1MB3 LINE L1 -10 6173 5679 1656 232 57 5 chr6 1116947 1117274 -181297968 - L1 LINE L1 -2649 3497 3143 183 100 0 0 chr6 1117274 1117304 -181297938 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1656 232 57 5 chr6 1117304 1117504 -181297738 - L1 LINE L1 -3003 3143 2955 872 176 70 20 chr6 1121098 1121297 -181293945 - AluJo SINE Alu -19 293 85 2174 104 3 0 chr6 1121739 1122047 -181293195 + AluSc SINE Alu 1 309 0 1600 167 56 44 chr6 1122061 1122170 -181293072 + L1MA5 LINE L1 5937 6043 -257 2065 102 21 0 chr6 1122170 1122453 -181292789 + AluSx SINE Alu 12 300 -12 1600 167 56 44 chr6 1122453 1122703 -181292539 + L1MA5 LINE L1 6043 6300 0 217 359 88 28 chr6 1123870 1124087 -181291155 + MIR SINE MIR 1 230 -32 345 308 51 0 chr6 1124526 1124643 -181290599 - L2 LINE L2 -5 3308 3186 335 295 36 58 chr6 1124645 1124784 -181290458 - MER5B DNA MER1_type -32 146 11 302 276 141 49 chr6 1124796 1124959 -181290283 - L2 LINE L2 -508 2806 2629 3513 195 64 12 chr6 1125439 1126130 -181289112 - MER21B LTR ERV1 -123 740 14 192 285 105 40 chr6 1126189 1126417 -181288825 - L2 LINE L2 -647 2667 2425 2466 153 50 10 chr6 1126488 1126892 -181288350 - MSTC LTR MaLR -8 420 1 2019 161 26 16 chr6 1127061 1127447 -181287795 - MLT1B LTR MaLR 0 390 1 2488 65 0 0 chr6 1128062 1128369 -181286873 + AluY SINE Alu 1 307 -4 393 275 9 28 chr6 1128439 1128548 -181286694 + L2 LINE L2 3162 3268 -4 220 331 6 0 chr6 1128920 1129092 -181286150 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 316 306 6 0 chr6 1129122 1129295 -181285947 + (CAGAGA)n Simple_repeat Simple_repeat 5 178 0 696 262 17 17 chr6 1129787 1129959 -181285283 - MER20 DNA MER1_type -10 209 38 2360 67 0 0 chr6 1131497 1131795 -181283447 + AluY SINE Alu 1 298 -13 241 250 20 50 chr6 1132185 1132285 -181282957 - L1ME4a LINE L1 -61 6060 5964 609 169 17 25 chr6 1132291 1132409 -181282833 - FLAM_C SINE Alu -14 129 13 500 261 11 44 chr6 1132529 1132709 -181282533 - MER5B DNA MER1_type 0 178 5 3311 170 18 24 chr6 1133800 1134108 -181281134 + L1MB3 LINE L1 5519 5827 -356 2381 51 0 3 chr6 1134108 1134403 -181280839 + AluY SINE Alu 1 294 -17 3311 170 18 24 chr6 1134403 1134763 -181280479 + L1MB3 LINE L1 5827 6183 0 571 240 74 88 chr6 1135235 1135501 -181279741 - L1MC4 LINE L1 0 8042 7781 451 177 10 0 chr6 1135501 1135597 -181279645 + L1MB2 LINE L1 6073 6169 -2 571 240 74 88 chr6 1135597 1135693 -181279549 - L1MC4 LINE L1 -261 7781 7685 21 0 0 0 chr6 1135704 1135725 -181279517 + AT_rich Low_complexity Low_complexity 1 21 0 522 163 17 22 chr6 1135731 1135909 -181279333 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 4061 241 60 12 chr6 1135948 1137112 -181278130 - L1MC4 LINE L1 -366 7676 6457 1397 154 16 36 chr6 1137359 1137716 -181277526 + Tigger2a DNA MER2_type 1 444 0 257 330 36 0 chr6 1138055 1138167 -181277075 - MLT1I LTR MaLR 0 409 294 361 285 42 76 chr6 1139891 1140154 -181275088 - MER102b DNA MER1_type 0 341 88 2074 118 13 0 chr6 1140569 1140874 -181274368 + AluSx SINE Alu 1 309 -3 352 335 80 4 chr6 1140940 1141179 -181274063 - MIR SINE MIR -3 259 3 195 302 16 0 chr6 1142317 1142380 -181272862 + MIR SINE MIR 82 145 -63 519 301 88 19 chr6 1142861 1143077 -181272165 - L1P LINE L1 -3089 3057 2827 505 161 32 0 chr6 1143083 1143176 -181272066 + L1PA16 LINE L1 6061 6156 -10 306 199 0 23 chr6 1143997 1144168 -181271074 + (TCTCTG)n Simple_repeat Simple_repeat 4 170 0 721 168 4 4 chr6 1144224 1144474 -181270768 + (TG)n Simple_repeat Simple_repeat 1 250 0 303 282 12 0 chr6 1145570 1145655 -181269587 - MER81 DNA DNA -27 87 2 1659 155 28 0 chr6 1146273 1146563 -181268679 - AluJo SINE Alu -14 298 1 181 194 0 28 chr6 1146706 1146742 -181268500 + L2 LINE L2 3227 3261 -11 244 234 117 97 chr6 1147541 1147686 -181267556 - MIR3 SINE MIR -30 178 31 652 94 0 0 chr6 1147694 1147779 -181267463 - AluJ/FLAM SINE Alu -217 95 11 428 247 23 40 chr6 1147843 1148017 -181267225 + L1MC5 LINE L1 7741 7911 -50 182 250 14 0 chr6 1148041 1148113 -181267129 + (TA)n Simple_repeat Simple_repeat 1 73 0 2148 101 6 19 chr6 1148250 1148567 -181266675 - AluSq SINE Alu 0 313 1 321 232 12 161 chr6 1148702 1148870 -181266372 - L2 LINE L2 -6 3307 3165 1106 202 164 13 chr6 1149018 1149335 -181265907 + MLT1A1 LTR MaLR 1 365 0 578 214 9 0 chr6 1149648 1149760 -181265482 + MER81 DNA DNA 2 114 0 21 0 0 0 chr6 1150377 1150398 -181264844 + AT_rich Low_complexity Low_complexity 1 21 0 2052 109 13 0 chr6 1151275 1151577 -181263665 - AluSq SINE Alu -7 306 1 826 199 92 24 chr6 1151996 1152202 -181263040 + MER58A DNA MER1_type 1 220 -4 2216 85 7 0 chr6 1154313 1154608 -181260634 + AluSq SINE Alu 1 297 -16 1183 109 55 0 chr6 1155205 1155388 -181259854 - L1PA14 LINE L1 -2 6159 5967 250 314 32 85 chr6 1156523 1156711 -181258531 - MIR SINE MIR -24 238 61 235 279 44 15 chr6 1157549 1157617 -181257625 - MIR3 SINE MIR -136 72 3 242 325 42 8 chr6 1157858 1157978 -181257264 + MIR SINE MIR 118 241 -21 611 327 44 31 chr6 1157998 1158224 -181257018 - MIR SINE MIR -23 239 11 2275 94 0 7 chr6 1158861 1159169 -181256073 + AluSq SINE Alu 1 306 -7 305 295 30 78 chr6 1159357 1159423 -181255819 - L1M4 LINE L1 -3316 2830 2762 2152 115 0 0 chr6 1159423 1159727 -181255515 - AluY SINE Alu -7 304 1 305 295 30 78 chr6 1159727 1159826 -181255416 - L1M4 LINE L1 -3384 2762 2673 286 277 170 0 chr6 1160345 1160457 -181254785 - L2 LINE L2 -4 3309 3179 297 167 0 0 chr6 1160982 1161030 -181254212 - L1MEd LINE L1 -5985 134 87 349 224 254 15 chr6 1161343 1161477 -181253765 + MIR SINE MIR 19 184 -78 186 351 91 0 chr6 1162015 1162092 -181253150 + MIR SINE MIR 179 262 0 261 286 31 10 chr6 1162094 1162192 -181253050 - L1MEd LINE L1 -6015 104 5 213 209 36 164 chr6 1162939 1163016 -181252226 - L2 LINE L2 -30 3283 3222 2113 110 0 3 chr6 1163016 1163316 -181251926 + AluSx SINE Alu 1 299 -13 213 209 36 164 chr6 1163316 1163348 -181251894 - L2 LINE L2 -91 3222 3188 373 316 58 23 chr6 1163364 1163535 -181251707 - MIR SINE MIR -8 254 78 650 314 47 13 chr6 1164419 1164655 -181250587 - MIR SINE MIR 0 262 19 1254 296 101 25 chr6 1164663 1165508 -181249734 - L1MC4a LINE L1 -867 5492 5272 2435 53 0 0 chr6 1165711 1166014 -181249228 - AluY SINE Alu -8 303 1 2088 103 0 3 chr6 1166477 1166768 -181248474 - AluSg SINE Alu -20 290 1 1149 134 0 6 chr6 1167373 1167545 -181247697 - Tigger1 DNA MER2_type 0 2418 2248 381 136 0 45 chr6 1167547 1167613 -181247629 - Tigger1 DNA MER2_type -2355 63 1 2165 96 27 7 chr6 1167960 1168252 -181246990 - AluSg SINE Alu -11 299 2 290 288 12 0 chr6 1168836 1168916 -181246326 + L2 LINE L2 3184 3264 -49 21 36 0 0 chr6 1169110 1169138 -181246104 + AT_rich Low_complexity Low_complexity 1 28 0 2151 114 20 0 chr6 1169212 1169510 -181245732 + AluSx SINE Alu 1 304 -8 232 250 50 19 chr6 1169983 1170143 -181245099 + (CA)n Simple_repeat Simple_repeat 1 165 0 2368 88 0 16 chr6 1170335 1170641 -181244601 + AluSx SINE Alu 1 301 -11 264 179 0 39 chr6 1171144 1171222 -181244020 + (CAGG)n Simple_repeat Simple_repeat 1 75 0 1040 253 101 58 chr6 1171356 1172011 -181243231 - L1MC5 LINE L1 -30 7931 7249 728 103 9 0 chr6 1172085 1172201 -181243041 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 24 0 0 0 chr6 1173264 1173288 -181241954 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 1173615 1173644 -181241598 + AT_rich Low_complexity Low_complexity 1 29 0 225 94 0 0 chr6 1174810 1174842 -181240400 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 380 304 32 0 chr6 1176751 1176876 -181238366 - L2 LINE L2 0 3313 3185 332 335 54 16 chr6 1177059 1177244 -181237998 - MIR3 SINE MIR -7 201 10 233 325 67 41 chr6 1178533 1178727 -181236515 - MIR3 SINE MIR -7 201 3 182 167 62 0 chr6 1180006 1180054 -181235188 + GA-rich Low_complexity Low_complexity 4 54 0 181 242 55 66 chr6 1181553 1181644 -181233598 - L2 LINE L2 -9 3263 3174 1724 193 42 28 chr6 1182009 1182367 -181232875 - MLT1A1 LTR MaLR -2 363 1 303 224 42 159 chr6 1183838 1184102 -181231140 + MER112 DNA MER1_type 1 233 -27 1497 206 59 6 chr6 1184631 1184951 -181230291 - MER58B DNA MER1_type -4 337 1 1716 151 27 38 chr6 1185522 1185814 -181229428 + AluJo SINE Alu 1 289 -23 288 0 0 0 chr6 1186759 1186791 -181228451 + (TG)n Simple_repeat Simple_repeat 2 33 0 2604 192 51 25 chr6 1186791 1187100 -181228142 - L1MB7 LINE L1 -11 6173 5874 1838 134 0 81 chr6 1187100 1187420 -181227822 - AluJo SINE Alu -14 298 5 2604 192 51 25 chr6 1187420 1187715 -181227527 - L1MB7 LINE L1 -310 5874 5553 1611 232 21 3 chr6 1187745 1188120 -181227122 - L1MA10 LINE L1 -7 6327 5946 2661 183 13 37 chr6 1188154 1188630 -181226612 + L1MA9 LINE L1 5042 5483 -819 236 136 0 0 chr6 1188630 1188674 -181226568 + LTR66 LTR ERVL 393 436 -174 2661 183 13 37 chr6 1188674 1189109 -181226133 + L1MA9 LINE L1 5483 5927 -375 318 26 0 0 chr6 1189917 1189956 -181225286 + (CCCTAA)n Simple_repeat Simple_repeat 6 44 0 1552 201 87 13 chr6 1191943 1192332 -181222910 + MSTC LTR MaLR 10 427 -1 1718 196 102 8 chr6 1193995 1194357 -181220885 + MSTD LTR MaLR 1 396 0 458 289 64 17 chr6 1194473 1194646 -181220596 - MLT1J LTR MaLR -330 181 1 631 243 10 2 chr6 1195481 1195653 -181219589 + L1P1 LINE L1 5604 5777 -362 604 240 8 0 chr6 1195862 1195991 -181219251 + AluJo SINE Alu 2 131 -181 1092 46 0 0 chr6 1195991 1196122 -181219120 - L1P2 LINE L1 -385 5770 5640 25 31 0 0 chr6 1196135 1196167 -181219075 + AT_rich Low_complexity Low_complexity 1 32 0 1207 151 0 0 chr6 1196167 1196339 -181218903 + AluJo SINE Alu 118 289 -23 573 290 106 44 chr6 1198264 1198585 -181216657 + MLT1J LTR MaLR 1 341 -170 397 274 115 0 chr6 1199350 1199463 -181215779 + MER94 DNA DNA 2 127 -7 2048 114 31 3 chr6 1201634 1201924 -181213318 + AluSx SINE Alu 1 298 -14 1228 63 11 6 chr6 1201946 1202121 -181213121 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 378 258 31 31 chr6 1202701 1202829 -181212413 - LTR67 LTR ERVL 0 557 430 447 184 0 0 chr6 1203220 1203307 -181211935 + (TG)n Simple_repeat Simple_repeat 1 87 0 1737 164 9 50 chr6 1204921 1205244 -181209998 + AluJo SINE Alu 1 310 -2 238 232 0 53 chr6 1206714 1206904 -181208338 + CT-rich Low_complexity Low_complexity 1 180 0 662 182 75 44 chr6 1207880 1208039 -181207203 + L1ME LINE L1 138 301 -5904 759 277 152 16 chr6 1208073 1208653 -181206589 + L1ME LINE L1 703 1207 -4998 5658 131 51 30 chr6 1208927 1209277 -181205965 - L1MA5 LINE L1 -3 6297 5956 2320 84 13 0 chr6 1209277 1209576 -181205666 - AluSg SINE Alu -7 303 1 5658 131 51 30 chr6 1209576 1210756 -181204486 - L1MA5 LINE L1 -344 5956 4550 2296 61 7 0 chr6 1212558 1212877 -181202365 - AluY SINE Alu 0 321 1 2273 95 17 0 chr6 1213331 1213627 -181201615 + AluSp SINE Alu 1 301 -12 240 226 65 0 chr6 1213933 1213995 -181201247 + L2 LINE L2 3159 3224 -48 4376 257 83 12 chr6 1214178 1216103 -181199139 + L1MEc LINE L1 741 2805 -3410 515 77 0 121 chr6 1216103 1216155 -181199087 - MADE1 DNA Mariner 0 80 42 2147 114 7 14 chr6 1216155 1216452 -181198790 + AluSp SINE Alu 1 295 -18 515 77 0 121 chr6 1216452 1216490 -181198752 - MADE1 DNA Mariner -38 42 1 4376 257 83 12 chr6 1216490 1216771 -181198471 + L1MEc LINE L1 2805 3064 -3151 275 242 21 42 chr6 1217936 1218030 -181197212 - Charlie7 DNA MER1_type -5 2607 2516 4343 119 45 126 chr6 1218030 1218764 -181196478 + Tigger3b DNA MER2_type 2 794 -2235 993 89 0 0 chr6 1218764 1218888 -181196354 - AluSp/q SINE Alu -17 296 173 4343 119 45 126 chr6 1218888 1219301 -181195941 + Tigger3b DNA MER2_type 794 1177 -1852 2502 84 0 0 chr6 1219301 1219611 -181195631 - AluY SINE Alu -1 310 1 4343 119 45 126 chr6 1219611 1219663 -181195579 + Tigger3b DNA MER2_type 1177 1232 0 668 94 44 44 chr6 1221608 1221788 -181193454 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 418 220 7 11 chr6 1221788 1222071 -181193171 + GA-rich Low_complexity Low_complexity 1 281 0 2076 146 108 10 chr6 1223459 1223849 -181191393 - MSTA LTR MaLR 0 428 1 451 268 8 0 chr6 1224376 1224499 -181190743 - MER58B DNA MER1_type 0 341 218 718 196 39 67 chr6 1224770 1224949 -181190293 + MER58A DNA MER1_type 43 216 -8 215 154 0 26 chr6 1225888 1225927 -181189315 + CT-rich Low_complexity Low_complexity 4 41 0 3605 121 13 0 chr6 1226184 1226730 -181188512 - L1PB4 LINE L1 -4 6152 5600 183 184 0 0 chr6 1228767 1228805 -181186437 + CT-rich Low_complexity Low_complexity 3 40 0 657 225 62 25 chr6 1229875 1230035 -181185207 + MER63A DNA MER1_type 10 175 -35 5303 122 46 21 chr6 1230273 1230792 -181184450 + MER4D LTR ERV1 1 506 -366 2619 106 8 13 chr6 1230792 1231169 -181184073 + THE1C LTR MaLR 1 375 0 10262 105 40 45 chr6 1231169 1232755 -181182487 + THE1C-int LTR MaLR 1 1578 -2 5303 122 46 21 chr6 1232755 1232768 -181182474 + MER4D LTR ERV1 506 517 -355 2410 129 11 11 chr6 1232768 1233141 -181182101 + THE1C LTR MaLR 1 373 -2 5303 122 46 21 chr6 1233141 1233457 -181181785 + MER4D LTR ERV1 517 872 0 375 193 0 36 chr6 1233640 1233723 -181181519 - Charlie1 DNA MER1_type -7 2754 2675 2900 206 72 20 chr6 1233775 1234465 -181180777 - Charlie1 DNA MER1_type -225 2536 1811 2646 92 29 46 chr6 1234471 1234885 -181180357 - L1PA15 LINE L1 -2 6163 5757 1599 83 0 62 chr6 1234886 1235127 -181180115 + L1P4 LINE L1 5470 5695 -470 683 292 40 40 chr6 1235132 1235502 -181179740 - Charlie1 DNA MER1_type -954 1807 1438 200 135 0 54 chr6 1235522 1235559 -181179683 - MER5A DNA MER1_type -152 37 3 22 56 0 0 chr6 1235797 1235833 -181179409 + AT_rich Low_complexity Low_complexity 1 36 0 1721 39 5 0 chr6 1235834 1236042 -181179200 - L1PA4 LINE L1 0 6155 5947 405 331 7 0 chr6 1236258 1236403 -181178839 + MIR SINE MIR 117 262 0 25 0 0 0 chr6 1237012 1237037 -181178205 + AT_rich Low_complexity Low_complexity 1 25 0 282 199 62 155 chr6 1237052 1237099 -181178143 - MLT1L LTR MaLR -4 611 561 2610 7 0 0 chr6 1237099 1237376 -181177866 + AluYa5 SINE Alu 35 311 0 282 199 62 155 chr6 1237376 1237489 -181177753 - MLT1L LTR MaLR -54 561 466 1164 157 42 0 chr6 1238915 1239132 -181176110 + L1MA9 LINE L1 5919 6144 -168 661 138 36 29 chr6 1239141 1239279 -181175963 - L1MA7 LINE L1 -1 6290 6152 982 149 36 10 chr6 1239279 1239471 -181175771 + L1MA9 LINE L1 6114 6312 0 305 340 43 7 chr6 1239552 1239693 -181175549 - MIR3 SINE MIR -15 193 48 239 274 154 8 chr6 1241235 1241352 -181173890 - MLT1L LTR MaLR -106 436 303 * 470 222 220 24 chr6 1241328 1241583 -181173659 - MLT1G3 LTR MaLR -200 395 4 228 192 19 19 chr6 1243051 1243103 -181172139 + MER94 DNA DNA 6 57 -77 1233 152 22 9 chr6 1243172 1243396 -181171846 + L1MA8 LINE L1 6054 6280 -11 276 231 0 0 chr6 1243414 1243466 -181171776 + MER94 DNA DNA 68 119 -15 1832 209 104 14 chr6 1243575 1244038 -181171204 + MLT1D LTR MaLR 1 653 -1 686 191 92 13 chr6 1244081 1244233 -181171009 - AluJb SINE Alu -12 300 137 367 271 80 0 chr6 1244496 1244673 -181170569 - MIR SINE MIR 0 262 68 445 251 57 11 chr6 1244745 1244920 -181170322 - MIR SINE MIR -34 228 46 301 253 12 12 chr6 1245543 1245626 -181169616 + MIR3 SINE MIR 108 190 -18 205 318 0 0 chr6 1245647 1245710 -181169532 + GA-rich Low_complexity Low_complexity 3 65 0 2482 85 3 0 chr6 1246571 1246877 -181168365 - AluSp SINE Alu -6 307 1 2218 95 3 3 chr6 1247315 1247598 -181167644 - AluSc SINE Alu -26 283 1 7012 69 8 0 chr6 1248076 1249079 -181166163 - L1PA7 LINE L1 -4 6150 5145 2143 69 10 3 chr6 1249080 1249369 -181165873 + L1PA7 LINE L1 4873 5163 -983 1739 162 98 0 chr6 1249808 1250123 -181165119 + MER7A DNA MER2_type 1 344 -2 250 262 16 0 chr6 1252155 1252216 -181163026 - L2 LINE L2 -25 3247 3186 2160 112 25 0 chr6 1254434 1254720 -181160522 + AluSg SINE Alu 1 293 -17 23 33 0 0 chr6 1255707 1255737 -181159505 + AT_rich Low_complexity Low_complexity 1 30 0 282 303 31 31 chr6 1255971 1256133 -181159109 + L1ME LINE L1 306 467 -5905 395 271 25 109 chr6 1256302 1256776 -181158466 + L1ME LINE L1 1186 1609 -4775 1576 112 0 14 chr6 1256777 1257000 -181158242 - AluSg/x SINE Alu -5 305 86 1028 188 5 30 chr6 1257069 1257271 -181157971 - AluJb SINE Alu -9 303 107 274 291 94 0 chr6 1257280 1257407 -181157835 + MIR SINE MIR 124 262 0 346 270 99 34 chr6 1258161 1258394 -181156848 - MIR SINE MIR -1 261 14 201 175 0 0 chr6 1259330 1259370 -181155872 + CT-rich Low_complexity Low_complexity 1 40 0 242 253 51 0 chr6 1259898 1259977 -181155265 + L2 LINE L2 3190 3272 0 384 141 62 18 chr6 1260432 1260716 -181154526 + (TAGA)n Simple_repeat Simple_repeat 1 296 0 504 72 0 0 chr6 1260729 1260798 -181154444 + (CAGA)n Simple_repeat Simple_repeat 3 71 0 2355 237 78 62 chr6 1261197 1261771 -181153471 + L1MEc LINE L1 34 631 -5765 540 148 30 20 chr6 1261771 1261872 -181153370 + U13 snRNA snRNA 2 103 -1 2355 237 78 62 chr6 1261872 1262259 -181152983 + L1MEc LINE L1 631 1010 -5386 402 303 8 0 chr6 1262357 1262479 -181152763 + MER94 DNA DNA 5 127 -7 2056 120 62 14 chr6 1264748 1265106 -181150136 + THE1C LTR MaLR 1 375 0 911 168 7 19 chr6 1265233 1265388 -181149854 + FRAM SINE Alu 1 152 -24 274 217 14 0 chr6 1266164 1266233 -181149009 + MIR3 SINE MIR 118 187 -21 26 30 0 0 chr6 1267235 1267268 -181147974 + AT_rich Low_complexity Low_complexity 1 33 0 251 246 204 24 chr6 1267396 1267563 -181147679 + MIR SINE MIR 66 262 0 45 69 0 0 chr6 1267571 1267658 -181147584 + AT_rich Low_complexity Low_complexity 1 87 0 513 232 176 67 chr6 1267791 1268361 -181146881 + L1ME4a LINE L1 5481 6121 0 1043 133 62 0 chr6 1269176 1269371 -181145871 - L1MA8 LINE L1 -1 6290 6084 551 277 94 89 chr6 1269448 1269820 -181145422 + MLT1J LTR MaLR 107 480 -31 2492 217 104 3 chr6 1270083 1270793 -181144449 + L1M4 LINE L1 2433 3214 -2932 412 287 132 49 chr6 1270846 1271111 -181144131 + L2 LINE L2 3023 3309 -4 383 398 39 21 chr6 1271315 1271647 -181143595 - L2 LINE L2 -341 2973 2636 604 232 151 16 chr6 1272420 1272605 -181142637 + MIR SINE MIR 47 256 -6 974 225 35 22 chr6 1273619 1273850 -181141392 + MIR SINE MIR 12 245 -17 199 341 45 38 chr6 1276430 1276562 -181138680 - MIR SINE MIR -128 134 2 234 316 57 62 chr6 1278105 1278282 -181136960 + MER5B DNA MER1_type 3 178 0 2435 199 17 2 chr6 1279481 1279958 -181135284 - MER31A LTR ERV1 0 485 2 219 255 0 109 chr6 1280379 1280563 -181134679 + (CATCC)n Simple_repeat Simple_repeat 4 167 0 209 295 46 29 chr6 1280780 1280953 -181134289 + (CCCCAG)n Simple_repeat Simple_repeat 2 177 0 219 310 55 0 chr6 1280967 1281112 -181134130 + (CCCCAG)n Simple_repeat Simple_repeat 2 154 0 201 182 55 18 chr6 1281130 1281185 -181134057 + GA-rich Low_complexity Low_complexity 1 57 0 682 150 87 40 chr6 1281530 1281703 -181133539 - MER53 DNA DNA 0 189 9 2073 92 0 20 chr6 1282586 1282881 -181132361 + AluSc SINE Alu 1 289 -20 392 276 130 73 chr6 1283214 1283262 -181131980 + MIR SINE MIR 49 93 -169 1802 141 47 81 chr6 1283262 1283646 -181131596 + THE1C LTR MaLR 5 375 0 392 276 130 73 chr6 1283646 1283789 -181131453 + MIR SINE MIR 93 251 -11 284 346 101 37 chr6 1283982 1284170 -181131072 + MIR3 SINE MIR 6 205 -3 593 219 55 34 chr6 1284533 1284679 -181130563 - MER63 DNA MER1_type -57 779 5 456 266 104 67 chr6 1285419 1285822 -181129420 + L1MC/D LINE L1 2810 3227 -2919 429 338 102 37 chr6 1286100 1287522 -181127720 + L1MC/D LINE L1 3322 4836 -1310 271 308 63 46 chr6 1287569 1287917 -181127325 + L1MC/D LINE L1 4778 5131 -1015 400 287 91 41 chr6 1288049 1288672 -181126570 + L1MC/D LINE L1 5175 5824 -747 * 576 202 18 40 chr6 1288649 1288816 -181126426 + L1ME2 LINE L1 5667 5835 -329 632 302 0 37 chr6 1288853 1289095 -181126147 + L1ME2 LINE L1 5919 6151 -13 341 241 63 94 chr6 1289138 1289329 -181125913 + L1MC4 LINE L1 7839 8023 -19 293 0 27 0 chr6 1289818 1289855 -181125387 + (TG)n Simple_repeat Simple_repeat 2 39 0 269 183 127 14 chr6 1290117 1290188 -181125054 + MER69 DNA AcHobo 2448 2526 0 1489 174 11 3 chr6 1290568 1290850 -181124392 + AluJb SINE Alu 1 284 -28 545 255 208 0 chr6 1291971 1292183 -181123059 + MIR SINE MIR 4 259 -3 23 54 0 0 chr6 1292209 1292246 -181122996 + AT_rich Low_complexity Low_complexity 1 37 0 984 156 146 35 chr6 1293835 1294034 -181121208 - Tigger2a DNA MER2_type -26 418 198 323 209 198 0 chr6 1294023 1294114 -181121128 - Tigger2a DNA MER2_type -325 109 1 * 428 271 64 53 chr6 1294556 1294744 -181120498 - MIR SINE MIR -26 236 47 833 228 25 10 chr6 1295048 1295250 -181119992 + MER20 DNA MER1_type 1 205 -14 372 59 0 0 chr6 1295289 1295340 -181119902 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 281 293 84 95 chr6 1295573 1296014 -181119228 - L2 LINE L2 -832 2482 2047 323 216 0 81 chr6 1297284 1297395 -181117847 - MIR3 SINE MIR -18 190 89 1041 142 6 11 chr6 1297440 1297616 -181117626 - L1MA1 LINE L1 0 6302 6128 180 0 0 0 chr6 1299849 1299869 -181115373 + (TTC)n Simple_repeat Simple_repeat 2 21 0 831 158 0 8 chr6 1299874 1300001 -181115241 - FLAM_C SINE Alu -16 127 2 207 306 97 16 chr6 1300004 1300128 -181115114 - MIR3 SINE MIR -7 201 68 343 266 46 18 chr6 1300514 1300623 -181114619 - L2 LINE L2 -18 3295 3184 944 333 92 51 chr6 1300628 1301150 -181114092 - L2 LINE L2 -998 2316 1738 1535 65 0 0 chr6 1301150 1301349 -181113893 - L1PA4 LINE L1 0 6155 5957 944 333 92 51 chr6 1301349 1301750 -181113492 - L2 LINE L2 -1576 1738 1355 436 293 111 68 chr6 1302145 1302497 -181112745 - L2 LINE L2 -2604 710 344 1025 163 74 15 chr6 1302556 1302759 -181112483 - MER20 DNA MER1_type 0 219 5 206 292 210 52 chr6 1304590 1304712 -181110530 - L2 LINE L2 0 3313 3212 806 212 31 45 chr6 1304712 1304934 -181110308 - MER20 DNA MER1_type 0 219 1 206 292 210 52 chr6 1304934 1305078 -181110164 - L2 LINE L2 -101 3212 3005 218 371 60 0 chr6 1305615 1305731 -181109511 + L2 LINE L2 3148 3270 -2 860 287 5 0 chr6 1305741 1305964 -181109278 - MER58A DNA MER1_type 0 224 1 241 324 74 9 chr6 1306122 1306230 -181109012 - MIR3 SINE MIR -5 203 89 858 202 17 77 chr6 1307826 1308059 -181107183 + MER20 DNA MER1_type 1 219 0 1980 104 4 7 chr6 1308651 1308930 -181106312 + AluSx SINE Alu 24 301 -11 263 26 51 0 chr6 1311789 1311828 -181103414 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 189 107 0 0 chr6 1312062 1312090 -181103152 + (CACCAT)n Simple_repeat Simple_repeat 5 32 0 579 207 22 0 chr6 1312181 1312408 -181102834 - L1MA9 LINE L1 -21 6291 5964 2328 77 3 0 chr6 1312417 1312717 -181102525 - AluSp SINE Alu -12 301 1 552 239 60 24 chr6 1315107 1315274 -181099968 - MIR SINE MIR -73 189 17 233 178 0 0 chr6 1315977 1316022 -181099220 - L1MC4 LINE L1 -1339 6703 6659 21 0 0 0 chr6 1316984 1317005 -181098237 + AT_rich Low_complexity Low_complexity 1 21 0 254 329 35 12 chr6 1317024 1317109 -181098133 + L2 LINE L2 3019 3105 -167 638 264 96 65 chr6 1317575 1318059 -181097183 + LTR67 LTR ERVL 4 552 -5 407 268 78 33 chr6 1320367 1320520 -181094722 + MIR SINE MIR 26 185 -77 1000 133 40 0 chr6 1320865 1321038 -181094204 + L1MA8 LINE L1 6111 6290 -1 730 214 330 15 chr6 1321146 1321283 -181093959 + MLT1F LTR MaLR 1 94 -448 2437 86 0 0 chr6 1321283 1321587 -181093655 + AluSg SINE Alu 1 304 -6 730 214 330 15 chr6 1321587 1321861 -181093381 + MLT1F LTR MaLR 94 542 0 217 219 0 0 chr6 1321868 1321909 -181093333 + (CA)n Simple_repeat Simple_repeat 2 42 0 2993 224 122 22 chr6 1323047 1324076 -181091166 + L1M4 LINE L1 3909 5040 -1106 5752 119 7 8 chr6 1324076 1325671 -181089571 - L1PA13 LINE L1 0 6163 4549 218 125 25 0 chr6 1327388 1327428 -181087814 + T-rich Low_complexity Low_complexity 3 43 0 1663 128 132 0 chr6 1327597 1327863 -181087379 - AluSq SINE Alu -11 302 2 2162 115 0 10 chr6 1328282 1328594 -181086648 - AluSc SINE Alu 0 309 1 2154 172 13 0 chr6 1329450 1329828 -181085414 + MLT1B LTR MaLR 1 383 -7 195 69 0 0 chr6 1331243 1331272 -181083970 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 240 273 0 0 chr6 1332043 1332098 -181083144 + (CA)n Simple_repeat Simple_repeat 2 56 0 318 23 23 0 chr6 1332371 1332414 -181082828 + AluY SINE Alu 1 44 -256 2508 81 3 0 chr6 1332414 1332723 -181082519 + AluY SINE Alu 1 310 -1 1894 135 17 14 chr6 1332948 1333244 -181081998 + AluSx SINE Alu 1 297 -15 365 219 14 0 chr6 1333244 1333317 -181081925 + Tigger7 DNA MER2_type 1 74 -265 14670 125 20 6 chr6 1333326 1335519 -181079723 + Tigger1 DNA MER2_type 2 2227 -191 1182 82 44 0 chr6 1335775 1335960 -181079282 - AluY SINE Alu 0 307 116 883 180 28 28 chr6 1335965 1336143 -181079099 + Tigger1 DNA MER2_type 2241 2418 0 1424 114 0 82 chr6 1336358 1336613 -181078629 + Tigger7 DNA MER2_type 2246 2479 -8 398 300 23 8 chr6 1336878 1337008 -181078234 - MIR3 SINE MIR -40 168 37 320 318 227 14 chr6 1337011 1337653 -181077589 - L3 LINE CR1 -1 1576 798 739 254 28 19 chr6 1337688 1337902 -181077340 + L1MA9 LINE L1 6087 6300 0 397 304 108 19 chr6 1338131 1338289 -181076953 - L3 LINE CR1 -1072 505 334 393 100 0 0 chr6 1338516 1338566 -181076676 + AluJ/FLAM SINE Alu 10 59 -243 228 356 7 52 chr6 1339719 1339854 -181075388 + MIR SINE MIR 20 148 -114 1778 166 14 14 chr6 1339986 1340275 -181074967 + AluJo SINE Alu 4 292 -20 2049 187 62 2 chr6 1341506 1341929 -181073313 + L1MB3 LINE L1 5736 6183 0 1638 160 71 11 chr6 1341942 1342223 -181073019 + AluJo SINE Alu 1 298 -14 235 274 137 74 chr6 1343261 1343320 -181071922 + L2 LINE L2 2967 3021 -251 2072 127 0 48 chr6 1343320 1343636 -181071606 + AluJo SINE Alu 1 301 -11 235 274 137 74 chr6 1343636 1343846 -181071396 + L2 LINE L2 3021 3253 -19 1256 217 75 70 chr6 1345340 1345777 -181069465 - MER63C DNA MER1_type 0 1556 258 1838 141 62 3 chr6 1347194 1347500 -181067742 - MER2 DNA MER2_type 0 345 22 2683 145 121 64 chr6 1347500 1348081 -181067161 + LTR18B LTR ERVL 1 614 0 3591 118 30 4 chr6 1348277 1348837 -181066405 + L1MA4A LINE L1 5717 6291 -12 3798 177 8 28 chr6 1349911 1350669 -181064573 + L1MB3 LINE L1 5434 6176 -7 299 305 28 71 chr6 1350813 1350954 -181064288 + L2 LINE L2 3134 3268 -4 237 387 13 0 chr6 1351255 1351410 -181063832 - L2 LINE L2 -2493 821 665 685 176 58 88 chr6 1351515 1351564 -181063678 - MER3 DNA MER1_type -8 201 152 653 225 8 0 chr6 1351564 1351693 -181063549 + FLAM_A SINE Alu 1 130 -3 685 176 58 88 chr6 1351693 1351848 -181063394 - MER3 DNA MER1_type -57 152 3 712 30 20 20 chr6 1352154 1352255 -181062987 + L1PA13 LINE L1 6063 6163 0 1124 189 7 88 chr6 1352503 1352799 -181062443 + MLT1A1 LTR MaLR 44 315 -50 365 309 132 7 chr6 1352871 1353023 -181062219 + MER5B DNA MER1_type 3 173 -5 273 322 132 0 chr6 1353573 1353725 -181061517 - MIR3 SINE MIR -7 201 30 378 239 43 15 chr6 1353919 1354051 -181061191 - MIR SINE MIR -61 147 24 1200 204 109 18 chr6 1355264 1355593 -181059649 + MLT1A1 LTR MaLR 7 365 0 198 103 0 0 chr6 1355648 1355677 -181059565 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2153 200 85 14 chr6 1355745 1356251 -181058991 - MER67A LTR ERV1 -1 542 1 29 70 0 0 chr6 1357722 1357779 -181057463 + AT_rich Low_complexity Low_complexity 1 57 0 962 237 74 18 chr6 1358146 1358554 -181056688 + MLT1J LTR MaLR 1 511 0 297 164 66 0 chr6 1360106 1360167 -181055075 - MIR SINE MIR -72 190 126 240 174 148 61 chr6 1361391 1361506 -181053736 - MER112 DNA MER1_type -91 169 45 259 248 53 71 chr6 1361661 1361774 -181053468 + MIR SINE MIR 80 190 -72 1683 184 125 3 chr6 1361914 1362267 -181052975 + MSTD LTR MaLR 1 396 0 904 309 58 42 chr6 1363055 1363515 -181051727 - L1ME1 LINE L1 -310 5856 5391 665 275 39 5 chr6 1363579 1363786 -181051456 - MIR SINE MIR -26 236 23 252 265 153 24 chr6 1364527 1364697 -181050545 + MIR SINE MIR 34 225 -37 207 335 67 12 chr6 1365375 1365539 -181049703 - MIR SINE MIR -62 200 28 437 349 0 0 chr6 1366359 1366511 -181048731 - MIR3 SINE MIR -10 198 47 200 333 0 0 chr6 1366569 1366623 -181048619 + (CA)n Simple_repeat Simple_repeat 1 54 0 315 232 0 0 chr6 1366649 1366731 -181048511 + (CATA)n Simple_repeat Simple_repeat 4 85 0 253 69 0 103 chr6 1366735 1366793 -181048449 - MER4-int LTR ERV1 -5436 1162 1111 522 241 0 0 chr6 1366800 1366945 -181048297 + (CATA)n Simple_repeat Simple_repeat 1 145 0 288 0 0 0 chr6 1368362 1368394 -181046848 + (CA)n Simple_repeat Simple_repeat 2 33 0 204 303 40 0 chr6 1368699 1368775 -181046467 - MIR SINE MIR -118 144 66 3611 148 5 45 chr6 1368776 1369882 -181045360 + L1M2 LINE L1 4729 5799 -501 301 125 0 0 chr6 1369909 1369957 -181045285 - L1M1 LINE L1 -471 5829 5782 226 282 48 8 chr6 1370644 1370768 -181044474 + LTR16C LTR ERVL 363 491 0 910 199 62 93 chr6 1372295 1372682 -181042560 + L1MC5 LINE L1 7198 7572 -389 1466 321 30 38 chr6 1372708 1373603 -181041639 + L1MEc LINE L1 36 923 -5473 2427 103 0 0 chr6 1373603 1373913 -181041329 - AluSg SINE Alu 0 310 1 706 292 86 15 chr6 1373915 1374322 -181040920 + L1MEc LINE L1 1021 1456 -4940 240 232 37 12 chr6 1374327 1374409 -181040833 + (TA)n Simple_repeat Simple_repeat 1 84 0 760 249 29 24 chr6 1374414 1374623 -181040619 + L1ME1 LINE L1 5953 6162 -4 762 268 58 22 chr6 1374653 1374966 -181040276 + L1MC5 LINE L1 7603 7926 -35 431 245 46 33 chr6 1375162 1375313 -181039929 - MLT1J LTR MaLR -2 509 357 207 0 0 0 chr6 1375912 1375935 -181039307 + (A)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 1377057 1377081 -181038161 + (A)n Simple_repeat Simple_repeat 1 24 0 270 246 62 0 chr6 1377766 1377831 -181037411 + MER94 DNA DNA 1 69 -65 7902 164 29 21 chr6 1377901 1379185 -181036057 + L1PB4 LINE L1 3783 5055 -1101 1845 152 3 20 chr6 1379185 1379481 -181035761 - AluJo SINE Alu -21 291 1 7902 164 29 21 chr6 1379481 1380356 -181034886 + L1PB4 LINE L1 5055 5962 -194 2260 51 0 116 chr6 1380356 1380691 -181034551 - AluY SINE Alu -15 296 1 7902 164 29 21 chr6 1380691 1380887 -181034355 + L1PB4 LINE L1 5962 6155 -1 27 0 0 0 chr6 1380887 1380914 -181034328 + AT_rich Low_complexity Low_complexity 1 27 0 244 289 133 43 chr6 1381378 1381539 -181033703 + L1MC4a LINE L1 5823 5968 -1840 2141 105 67 64 chr6 1381539 1381928 -181033314 + MLT1B LTR MaLR 1 390 0 244 289 133 43 chr6 1381928 1382067 -181033175 + L1MC4a LINE L1 5968 6150 -1658 786 202 0 0 chr6 1382070 1382199 -181033043 + FLAM_A SINE Alu 1 129 -4 1408 221 120 14 chr6 1382271 1382628 -181032614 + MSTD LTR MaLR 2 396 0 222 37 0 0 chr6 1382844 1382871 -181032371 + (CA)n Simple_repeat Simple_repeat 2 28 0 426 85 0 0 chr6 1383066 1383125 -181032117 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 196 217 0 22 chr6 1383580 1383626 -181031616 - MIR SINE MIR -190 72 28 260 224 0 15 chr6 1385947 1386014 -181029228 - L2 LINE L2 -63 3250 3185 23 0 0 0 chr6 1389019 1389042 -181026200 + GC_rich Low_complexity Low_complexity 1 23 0 55 62 0 0 chr6 1389464 1389561 -181025681 + GC_rich Low_complexity Low_complexity 1 97 0 21 57 0 0 chr6 1389788 1389823 -181025419 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 1389900 1389922 -181025320 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 1390576 1390600 -181024642 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 1390749 1390776 -181024466 + AT_rich Low_complexity Low_complexity 1 27 0 190 288 0 17 chr6 1394107 1394166 -181021076 - MIR SINE MIR -131 77 20 1080 67 8 0 chr6 1394542 1394676 -181020566 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1394676 1394878 -181020364 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1394882 1394942 -181020300 + AluSp SINE Alu 73 132 -181 1424 119 5 0 chr6 1394944 1395146 -181020096 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1395150 1395210 -181020032 + AluSp SINE Alu 73 132 -181 1039 67 7 7 chr6 1395212 1395347 -181019895 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1395347 1395549 -181019693 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1395553 1395613 -181019629 + AluSp SINE Alu 73 132 -181 1434 119 5 0 chr6 1395615 1395817 -181019425 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1395821 1395881 -181019361 + AluSp SINE Alu 73 132 -181 1053 83 0 0 chr6 1395883 1396015 -181019227 + AluSp SINE Alu 1 132 -181 1484 104 5 0 chr6 1396017 1396219 -181019023 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1396223 1396283 -181018959 + AluSp SINE Alu 73 132 -181 1055 83 0 0 chr6 1396285 1396417 -181018825 + AluSp SINE Alu 1 132 -181 2363 87 10 0 chr6 1396419 1396728 -181018514 + AluSp SINE Alu 1 312 -1 1557 163 3 48 chr6 1398492 1398781 -181016461 + AluJo SINE Alu 29 304 -8 498 238 163 13 chr6 1399644 1399887 -181015355 + L1ME1 LINE L1 5887 6159 -7 316 222 14 14 chr6 1401848 1401920 -181013322 - Tigger5 DNA MER2_type -1 2322 2251 * 386 164 0 0 chr6 1401889 1401944 -181013298 - Tigger5 DNA MER2_type -2268 55 1 1025 96 0 0 chr6 1402786 1402922 -181012320 - AluSg/x SINE Alu -1 311 176 299 143 0 0 chr6 1402994 1403043 -181012199 + L1MA8 LINE L1 6116 6164 -127 410 321 139 9 chr6 1403187 1403511 -181011731 - LTR16C LTR ERVL -39 452 87 367 223 57 76 chr6 1403628 1403785 -181011457 + MER63A DNA MER1_type 55 208 -2 1113 227 32 4 chr6 1403958 1404209 -181011033 + MIR SINE MIR 5 262 0 5897 141 20 15 chr6 1404495 1405493 -181009749 - L1MA8 LINE L1 -25 6266 5264 2818 49 0 0 chr6 1405529 1405855 -181009387 - LTR17 LTR ERV1 -454 326 1 4743 50 2 2 chr6 1405856 1406414 -181008828 - HERV17 LTR ERV1 -1 8625 8068 * 5669 62 3 1 chr6 1406405 1407097 -181008145 - HERV17 LTR ERV1 -3304 5322 4630 210 105 0 0 chr6 1407136 1407174 -181008068 + (TA)n Simple_repeat Simple_repeat 1 38 0 2032 135 0 30 chr6 1407650 1407953 -181007289 + AluSq SINE Alu 1 294 -19 2338 105 0 0 chr6 1408327 1408623 -181006619 - AluSg SINE Alu -14 296 1 1125 283 83 38 chr6 1409102 1409657 -181005585 + L1MC4a LINE L1 5298 5877 -1931 340 304 0 36 chr6 1409952 1410064 -181005178 + GA-rich Low_complexity Low_complexity 1 108 0 195 279 16 0 chr6 1411659 1411720 -181003522 - MIR3 SINE MIR -37 171 110 327 364 114 13 chr6 1412305 1412533 -181002709 + L3 LINE CR1 342 592 -985 687 237 46 98 chr6 1412585 1412857 -181002385 + L2 LINE L2 3006 3260 -53 2321 107 3 0 chr6 1412857 1413165 -181002077 + AluSx SINE Alu 1 309 -3 687 237 46 98 chr6 1413165 1413217 -181002025 + L2 LINE L2 3260 3313 0 741 296 35 43 chr6 1413231 1413576 -181001666 + L3 LINE CR1 682 1023 -554 342 251 97 58 chr6 1413623 1413770 -181001472 + L1MC4a LINE L1 5665 5824 -1984 1802 161 10 20 chr6 1413770 1414074 -181001168 + AluJb SINE Alu 1 301 -11 342 251 97 58 chr6 1414074 1414133 -181001109 + L1MC4a LINE L1 5824 5879 -1929 244 314 35 0 chr6 1414205 1414291 -181000951 + MER5A DNA MER1_type 18 106 -83 637 164 49 16 chr6 1414355 1414477 -181000765 - L1MB4 LINE L1 -3 6177 6052 227 357 143 9 chr6 1414578 1414690 -181000552 - L2 LINE L2 0 3272 3146 228 200 0 0 chr6 1414753 1414793 -181000449 + L1MB3 LINE L1 5551 5590 -722 2197 176 51 7 chr6 1414893 1415307 -180999935 + L1MA9 LINE L1 5832 6263 -49 1198 186 19 27 chr6 1416849 1417107 -180998135 + L1MCa LINE L1 6 261 -6165 * 4039 183 65 26 chr6 1417101 1418141 -180997101 + L1MCa LINE L1 775 1773 -4653 1495 185 26 15 chr6 1418141 1418411 -180996831 - AluJb SINE Alu -37 275 3 4039 183 65 26 chr6 1418411 1419526 -180995716 + L1MCa LINE L1 1773 3110 -3316 3378 225 5 16 chr6 1419513 1420308 -180994934 + L1MCa LINE L1 4145 4930 -1496 * 2476 138 14 32 chr6 1420368 1420761 -180994481 + L1MB3 LINE L1 5748 6134 -49 1584 186 0 38 chr6 1420761 1421079 -180994163 + AluJo SINE Alu 1 306 -6 2476 138 14 32 chr6 1421079 1421126 -180994116 + L1MB3 LINE L1 6134 6180 -3 426 20 0 0 chr6 1421698 1421749 -180993493 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 202 284 75 0 chr6 1421784 1421851 -180993391 - MIR SINE MIR -104 158 87 2188 108 0 3 chr6 1422821 1423108 -180992134 + AluSg SINE Alu 1 286 -24 288 0 0 0 chr6 1423357 1423389 -180991853 + (CA)n Simple_repeat Simple_repeat 1 32 0 5879 245 28 29 chr6 1425061 1427331 -180987911 + L1MB7 LINE L1 16 2424 -4401 2615 97 8 0 chr6 1427331 1427683 -180987559 - THE1A LTR MaLR 0 355 1 4211 87 3 7 chr6 1427683 1428255 -180986987 - THE1A-int LTR MaLR 0 1580 1011 876 240 22 11 chr6 1428255 1428530 -180986712 + L1MB7 LINE L1 3542 3819 -2825 7567 219 14 5 chr6 1428566 1430745 -180984497 + L1 LINE L1 1610 3826 -2320 1220 162 8 7 chr6 1430735 1431036 -180984206 + L1MB7 LINE L1 4163 4432 -2212 * 257 174 0 0 chr6 1431043 1431089 -180984153 + GA-rich Low_complexity Low_complexity 3 48 0 454 126 0 23 chr6 1431209 1431296 -180983946 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 1073 116 6 0 chr6 1431320 1431493 -180983749 + (GGGAA)n Simple_repeat Simple_repeat 1 174 0 3801 168 55 42 chr6 1431493 1432082 -180983160 + L1MB7 LINE L1 5699 6279 -403 2344 85 0 26 chr6 1432082 1432388 -180982854 + AluSx SINE Alu 1 298 -14 2057 120 53 0 chr6 1432398 1432682 -180982560 + AluSx SINE Alu 1 299 -13 3801 168 55 42 chr6 1432682 1432919 -180982323 + L1MB7 LINE L1 6287 6547 -135 2440 99 0 0 chr6 1432919 1433231 -180982011 + AluSp SINE Alu 1 312 -1 3801 168 55 42 chr6 1433231 1433282 -180981960 + L1MB7 LINE L1 6547 6596 -86 1337 168 50 23 chr6 1433282 1433544 -180981698 + Tigger2a DNA MER2_type 1 269 -165 482 201 54 0 chr6 1433547 1434361 -180980881 + (TA)n Simple_repeat Simple_repeat 1 857 0 309 146 0 0 chr6 1434385 1434440 -180980802 + L1MB8 LINE L1 6112 6166 -12 394 313 84 39 chr6 1434443 1434881 -180980361 - L1MC/D LINE L1 -2096 5712 5255 207 273 273 14 chr6 1435004 1435147 -180980095 + L2 LINE L2 1313 1492 -1822 5142 194 71 44 chr6 1435410 1435477 -180979765 - Charlie1 DNA MER1_type 0 2761 2697 1982 113 76 0 chr6 1435477 1435752 -180979490 + AluSx SINE Alu 3 298 -14 5142 194 71 44 chr6 1435752 1436456 -180978786 - Charlie1 DNA MER1_type -64 2697 2014 1240 218 58 14 chr6 1436456 1436749 -180978493 - AluJo SINE Alu -6 306 1 5142 194 71 44 chr6 1436749 1437418 -180977824 - Charlie1 DNA MER1_type -747 2014 1280 3783 60 2 2 chr6 1437418 1437888 -180977354 + L1PA5 LINE L1 5685 6154 0 836 165 38 0 chr6 1437901 1438034 -180977208 + AluSq/x SINE Alu 1 138 -174 4364 226 53 30 chr6 1438047 1439263 -180975979 - Charlie1 DNA MER1_type -1513 1248 6 2152 168 13 3 chr6 1440182 1440568 -180974674 - MLT1B LTR MaLR 0 390 1 305 308 0 19 chr6 1440619 1440723 -180974519 + L2 LINE L2 3170 3271 -1 22 0 0 0 chr6 1441512 1441534 -180973708 + AT_rich Low_complexity Low_complexity 1 22 0 1614 192 7 16 chr6 1442513 1442820 -180972422 + AluJo SINE Alu 7 310 -2 1766 176 20 3 chr6 1443396 1443702 -180971540 - AluJb SINE Alu -1 311 1 282 242 0 0 chr6 1445235 1445297 -180969945 + L2 LINE L2 3250 3311 -2 2298 116 51 25 chr6 1445345 1445700 -180969542 - THE1B LTR MaLR 0 364 1 765 247 0 6 chr6 1445731 1445889 -180969353 + FRAM SINE Alu 1 156 -20 247 288 76 47 chr6 1446054 1446290 -180968952 + L1ME LINE L1 3931 4173 -1973 518 228 39 0 chr6 1446344 1446471 -180968771 + MER103 DNA DNA 35 166 0 342 361 46 16 chr6 1446612 1446806 -180968436 + MIR SINE MIR 14 213 -49 424 278 231 4 chr6 1446821 1447094 -180968148 + L1ME LINE L1 5412 5746 -375 376 236 57 57 chr6 1447381 1447521 -180967721 - L1M4 LINE L1 -2892 3254 3115 559 322 17 6 chr6 1447556 1447736 -180967506 + LTR67 LTR ERVL 45 226 -331 311 301 28 57 chr6 1447844 1448020 -180967222 + LTR67 LTR ERVL 387 557 0 384 296 67 62 chr6 1448023 1448459 -180966783 - L1M4 LINE L1 -3034 3112 2675 387 331 18 6 chr6 1448469 1448632 -180966610 + MER5A DNA MER1_type 1 165 -24 265 352 88 33 chr6 1448674 1448856 -180966386 - L3b LINE CR1 -61 1522 1331 578 291 34 6 chr6 1449282 1449461 -180965781 + MLT1L LTR MaLR 431 614 -1 232 346 79 0 chr6 1449551 1449678 -180965564 - L3b LINE CR1 -343 1240 1104 836 256 106 47 chr6 1450086 1450493 -180964749 + L2 LINE L2 2883 3313 0 26 104 0 0 chr6 1451260 1451356 -180963886 + AT_rich Low_complexity Low_complexity 1 96 0 404 191 114 15 chr6 1451449 1451580 -180963662 + ORSL DNA AcHobo 1 144 -131 2213 71 7 0 chr6 1452822 1453139 -180962103 - AluSg SINE Alu 0 320 2 24 32 0 0 chr6 1453931 1453962 -180961280 + GC_rich Low_complexity Low_complexity 1 31 0 740 268 38 0 chr6 1454734 1454917 -180960325 - MIR SINE MIR -8 254 65 292 286 62 34 chr6 1456702 1456880 -180958362 + L1MC5 LINE L1 7749 7931 -30 23 33 0 0 chr6 1457558 1457588 -180957654 + GC_rich Low_complexity Low_complexity 1 30 0 319 259 0 0 chr6 1457657 1457742 -180957500 + G-rich Low_complexity Low_complexity 3 87 0 381 280 77 28 chr6 1461889 1462032 -180953210 + MIR SINE MIR 5 154 -108 315 0 0 0 chr6 1462955 1462990 -180952252 + (CA)n Simple_repeat Simple_repeat 1 35 0 239 173 19 0 chr6 1464318 1464370 -180950872 + CT-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 1465567 1465588 -180949654 + (CCA)n Simple_repeat Simple_repeat 3 23 0 29 60 0 0 chr6 1465641 1465691 -180949551 + GC_rich Low_complexity Low_complexity 1 50 0 387 0 0 0 chr6 1467259 1467302 -180947940 + (CA)n Simple_repeat Simple_repeat 1 43 0 1521 134 5 0 chr6 1472163 1472387 -180942855 - AluJo SINE Alu 0 312 88 860 197 26 57 chr6 1473194 1473387 -180941855 - MER5A DNA MER1_type 0 189 3 444 227 20 0 chr6 1473904 1474054 -180941188 + GA-rich Low_complexity Low_complexity 2 154 0 347 222 8 0 chr6 1474087 1474204 -180941038 + GA-rich Low_complexity Low_complexity 2 119 0 223 226 0 36 chr6 1474235 1474319 -180940923 + GA-rich Low_complexity Low_complexity 3 83 0 23 0 0 0 chr6 1474795 1474818 -180940424 + AT_rich Low_complexity Low_complexity 1 23 0 1921 213 12 5 chr6 1475739 1476167 -180939075 + L1MA7 LINE L1 5371 5801 -490 409 200 27 0 chr6 1476170 1476245 -180938997 - Charlie3 DNA MER1_type 0 2712 2636 2057 177 58 33 chr6 1476256 1476741 -180938501 + L1MA7 LINE L1 5795 6291 0 768 179 0 0 chr6 1477492 1477807 -180937435 + (CA)n Simple_repeat Simple_repeat 1 315 0 713 171 0 11 chr6 1477854 1478035 -180937207 + (CA)n Simple_repeat Simple_repeat 2 180 0 588 218 0 0 chr6 1478077 1478437 -180936805 + (CA)n Simple_repeat Simple_repeat 1 360 0 263 321 0 21 chr6 1478444 1478584 -180936658 + (CATA)n Simple_repeat Simple_repeat 2 138 0 496 212 6 6 chr6 1478588 1478767 -180936475 + (CA)n Simple_repeat Simple_repeat 1 179 0 1719 169 67 9 chr6 1479614 1479957 -180935285 - MLT1B LTR MaLR -8 382 20 2288 108 0 0 chr6 1480826 1481121 -180934121 + AluSx SINE Alu 1 295 -17 2256 74 7 17 chr6 1483346 1483645 -180931597 + AluY SINE Alu 1 296 -15 196 267 15 126 chr6 1485378 1485471 -180929771 - MIR SINE MIR -51 211 135 2350 64 4 0 chr6 1485471 1485791 -180929451 + AluY SINE Alu 1 321 0 196 267 15 126 chr6 1485791 1485831 -180929411 - MIR SINE MIR -127 135 92 859 171 56 42 chr6 1486026 1486242 -180929000 + MER20 DNA MER1_type 1 219 0 1851 148 0 48 chr6 1486301 1486612 -180928630 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr6 1486612 1486633 -180928609 + AT_rich Low_complexity Low_complexity 1 21 0 1981 151 3 7 chr6 1486644 1486942 -180928300 + AluJo SINE Alu 1 297 -15 462 264 85 0 chr6 1487988 1488117 -180927125 - Charlie8 DNA MER1_type -2273 144 5 294 333 67 9 chr6 1490197 1490302 -180924940 + MIR3 SINE MIR 95 205 -3 536 287 96 57 chr6 1490606 1490815 -180924427 - MIR SINE MIR -31 231 15 828 136 8 15 chr6 1491469 1491601 -180923641 + AluSq/x SINE Alu 1 131 -181 280 275 22 11 chr6 1491803 1491894 -180923348 - MIR SINE MIR -122 140 49 225 0 0 0 chr6 1492617 1492642 -180922600 + (TG)n Simple_repeat Simple_repeat 2 26 0 404 129 14 14 chr6 1492659 1492729 -180922513 - FLAM SINE Alu -19 124 55 2201 126 3 0 chr6 1492770 1493080 -180922162 - AluSx SINE Alu -1 311 1 730 135 23 23 chr6 1493089 1493222 -180922020 - FLAM_C SINE Alu 0 133 1 618 284 12 0 chr6 1493749 1493918 -180921324 - MER58A DNA MER1_type -9 215 45 191 200 0 100 chr6 1494116 1494166 -180921076 - MIR SINE MIR -2 260 216 720 194 58 13 chr6 1494196 1494351 -180920891 + FRAM SINE Alu 1 161 -15 366 269 112 30 chr6 1494407 1494541 -180920701 - MIR SINE MIR -96 166 22 299 315 112 12 chr6 1494562 1494732 -180920510 + MIR SINE MIR 43 228 -34 1645 148 33 23 chr6 1494799 1495104 -180920138 + MER44D DNA MER2_type 32 609 0 4028 184 81 12 chr6 1495120 1496785 -180918457 - L1MB8 LINE L1 -54 6124 4346 23 0 0 0 chr6 1496785 1496808 -180918434 + AT_rich Low_complexity Low_complexity 1 23 0 454 260 71 63 chr6 1496814 1497068 -180918174 - L1M4 LINE L1 -1616 4530 4275 21 36 0 0 chr6 1497117 1497145 -180918097 + AT_rich Low_complexity Low_complexity 1 28 0 197 231 0 58 chr6 1497241 1497293 -180917949 - L2 LINE L2 0 3313 3265 * 287 234 0 0 chr6 1497270 1497338 -180917904 + MIR SINE MIR 24 91 -117 621 256 106 0 chr6 1497343 1497523 -180917719 + MIR SINE MIR 64 262 0 257 271 158 55 chr6 1497535 1497933 -180917309 - L2 LINE L2 -56 3257 2819 1468 167 23 20 chr6 1498054 1498354 -180916888 - L1MA5 LINE L1 -19 6281 5981 260 271 35 0 chr6 1498428 1498513 -180916729 - MLT1H1 LTR MaLR -4 551 464 258 318 37 9 chr6 1498701 1498808 -180916434 - MLT1H LTR MaLR -337 212 103 822 256 56 16 chr6 1499432 1499682 -180915560 + MIR SINE MIR 2 261 -1 1227 120 69 0 chr6 1499682 1499898 -180915344 + Tigger4(Zombi) DNA MER2_type 1 231 -2500 1776 89 44 173 chr6 1499900 1500106 -180915136 + Tigger4(Zombi) DNA MER2_type 2333 2457 -274 2095 142 0 0 chr6 1500106 1500417 -180914825 - AluSx SINE Alu -1 311 1 1776 89 44 173 chr6 1500417 1500639 -180914603 + Tigger4(Zombi) DNA MER2_type 2457 2706 -25 2244 110 3 3 chr6 1502244 1502545 -180912697 - AluSq SINE Alu -12 301 1 1877 159 3 16 chr6 1502562 1502877 -180912365 + AluJb SINE Alu 1 311 -1 1021 181 0 0 chr6 1503260 1503437 -180911805 - AluJ SINE Alu -16 296 120 43294 32 3 1 chr6 1503439 1509575 -180905667 - L1PA3 LINE L1 -8 6147 1 748 187 0 15 chr6 1509581 1509715 -180905527 - AluJ SINE Alu -170 132 1 244 296 51 0 chr6 1509855 1509953 -180905289 + MIR SINE MIR 105 207 -55 2771 199 65 21 chr6 1510240 1510328 -180904914 + L1MB3 LINE L1 5495 5578 -605 2242 112 3 0 chr6 1510328 1510622 -180904620 + AluSx SINE Alu 1 295 -17 2771 199 65 21 chr6 1510622 1511191 -180904051 + L1MB3 LINE L1 5578 6181 -2 875 129 0 30 chr6 1512120 1512252 -180902990 - AluJ SINE Alu -174 128 1 220 53 53 0 chr6 1512915 1512953 -180902289 + C-rich Low_complexity Low_complexity 141 180 0 492 270 263 16 chr6 1512955 1513533 -180901709 + L2 LINE L2 1928 2648 -666 191 254 0 16 chr6 1513929 1513992 -180901250 + L2 LINE L2 3198 3259 -54 254 157 14 57 chr6 1514106 1514176 -180901066 + L1ME1 LINE L1 5363 5426 -740 375 157 36 0 chr6 1514176 1514259 -180900983 + L1MB3 LINE L1 6096 6181 -2 1660 248 22 72 chr6 1514274 1514705 -180900537 + L1ME1 LINE L1 5410 5798 -368 1908 144 53 0 chr6 1514705 1514989 -180900253 + AluSx SINE Alu 1 299 -13 1660 248 22 72 chr6 1514989 1515227 -180900015 + L1ME1 LINE L1 5798 6046 -120 549 253 6 77 chr6 1515393 1515509 -180899733 + MER45A DNA AcHobo 1 102 -1479 2237 96 0 0 chr6 1515509 1515824 -180899418 - AluSg SINE Alu 0 315 1 549 253 6 77 chr6 1515824 1515888 -180899354 + MER45A DNA AcHobo 102 169 -9 628 253 135 47 chr6 1516408 1516705 -180898537 + MER2 DNA MER2_type 2 324 -21 698 131 57 0 chr6 1516774 1516896 -180898346 + LOR1a LTR ERV1 1 129 -368 * 1467 142 80 24 chr6 1516894 1516963 -180898279 + LOR1b LTR ERV1 158 222 -239 2224 131 56 8 chr6 1516963 1517321 -180897921 - THE1C LTR MaLR 0 375 1 1467 142 80 24 chr6 1517321 1517539 -180897703 + LOR1b LTR ERV1 222 461 0 257 213 227 0 chr6 1517576 1517651 -180897591 - MER5A DNA MER1_type -89 100 9 226 296 45 45 chr6 1517712 1517800 -180897442 + MIR SINE MIR 44 131 -131 428 248 67 0 chr6 1517900 1518005 -180897237 - MIR SINE MIR -98 164 53 1824 145 0 4 chr6 1518017 1518286 -180896956 - AluJb SINE Alu -13 299 32 369 222 118 30 chr6 1518500 1518635 -180896607 - HAL1b LINE L1 -1 1347 1201 21 36 0 0 chr6 1518797 1518825 -180896417 + AT_rich Low_complexity Low_complexity 1 28 0 411 329 66 56 chr6 1518845 1519149 -180896093 - L1ME LINE L1 -542 5579 5273 1999 104 26 0 chr6 1519200 1519469 -180895773 + AluSx SINE Alu 30 305 -7 245 318 15 8 chr6 1519553 1519685 -180895557 - L1ME LINE L1 -1071 5075 4943 867 251 77 40 chr6 1519776 1520155 -180895087 - L1ME1 LINE L1 -15 6151 5759 1687 206 113 53 chr6 1520155 1520679 -180894563 + LTR60 LTR ERV1 1 555 -31 930 265 69 57 chr6 1520746 1521222 -180894020 - L1ME1 LINE L1 -419 5765 5284 329 328 36 34 chr6 1521250 1521607 -180893635 - L1ME LINE L1 -1299 4847 4490 3696 109 17 67 chr6 1521970 1522073 -180893169 - L1PB3 LINE L1 -23 6131 6024 1991 158 0 3 chr6 1522073 1522376 -180892866 - AluJb SINE Alu -10 302 1 3696 109 17 67 chr6 1522376 1522478 -180892764 - L1PB3 LINE L1 -130 6024 5624 598 262 60 84 chr6 1522478 1522660 -180892582 - L1MC2 LINE L1 -391 5953 5768 2738 32 0 13 chr6 1522660 1522975 -180892267 - AluY SINE Alu 0 311 1 598 262 60 84 chr6 1522975 1523304 -180891938 - L1MC2 LINE L1 -576 5768 5454 496 237 132 7 chr6 1523749 1523901 -180891341 - MLT1J LTR MaLR -15 496 326 554 253 33 20 chr6 1523965 1524115 -180891127 - MLT1J LTR MaLR -352 159 8 496 248 97 7 chr6 1524371 1524516 -180890726 - MLT1I LTR MaLR -210 199 42 1445 204 32 3 chr6 1525132 1525441 -180889801 - LTR23 LTR ERV1 -3 434 117 1373 156 124 0 chr6 1525444 1525701 -180889541 + AluJb SINE Alu 12 300 -12 468 153 135 0 chr6 1525706 1525817 -180889425 - LTR23 LTR ERV1 -311 126 1 425 335 25 37 chr6 1525985 1526230 -180889012 - MLT1J1 LTR MaLR -13 433 192 1591 188 114 112 chr6 1526240 1526870 -180888372 - LTR8A LTR ERV1 -3 724 94 2770 131 66 31 chr6 1526870 1527406 -180887836 - LTR35 LTR ERV1 0 618 1 377 211 79 0 chr6 1527406 1527482 -180887760 - LTR8 LTR ERV1 -609 82 1 1247 143 52 13 chr6 1527503 1527733 -180887509 - MLT1B LTR MaLR -12 378 140 2921 188 20 5 chr6 1527735 1528321 -180886921 + LTR49 LTR ERV1 1 595 0 4288 148 60 65 chr6 1528323 1529569 -180885673 + LTR49-int LTR ERV1 1 1470 -4476 707 143 21 43 chr6 1529571 1529711 -180885531 + FLAM_C SINE Alu 2 138 -5 2145 97 0 3 chr6 1529743 1530032 -180885210 - AluSx SINE Alu -24 288 1 282 306 14 0 chr6 1530111 1530183 -180885059 + tRNA-Glu-GAG tRNA tRNA 3 75 0 3870 199 31 44 chr6 1530183 1531065 -180884177 + MER57B-int LTR ERV1 1563 2432 -3899 1472 110 18 9 chr6 1531074 1531293 -180883949 - pTR5 LTR ERV1 -2046 392 172 317 169 73 83 chr6 1531298 1531394 -180883848 - LTR30 LTR ERV1 -77 702 544 4913 121 28 24 chr6 1531399 1532357 -180882885 - pTR5 LTR ERV1 -418 2020 743 1086 156 142 14 chr6 1532354 1532566 -180882676 + MER57B-int LTR ERV1 2436 2674 -3657 * 767 206 0 0 chr6 1532579 1532705 -180882537 + AluJ SINE Alu 2 127 -185 310 208 54 92 chr6 1532719 1532849 -180882393 + L1MCa LINE L1 1941 2065 -4361 302 124 72 10 chr6 1532849 1532946 -180882296 + (TA)n Simple_repeat Simple_repeat 1 103 0 872 187 24 0 chr6 1532950 1533116 -180882126 + AluJ SINE Alu 131 300 -12 6017 157 28 84 chr6 1533117 1534553 -180880689 + MER57B-int LTR ERV1 2666 4020 -2311 1962 117 36 23 chr6 1534553 1534860 -180880382 - L1PA15 LINE L1 -1 6164 5854 6017 157 28 84 chr6 1534860 1534895 -180880347 + MER57B-int LTR ERV1 4020 4055 -2276 13056 120 28 18 chr6 1534902 1535770 -180879472 + MER57B-int LTR ERV1 4210 5068 -1263 2067 121 3 0 chr6 1535770 1536068 -180879174 - AluSx SINE Alu -13 299 1 13056 120 28 18 chr6 1536068 1536547 -180878695 + MER57B-int LTR ERV1 5068 5541 -790 2870 138 5 5 chr6 1536547 1536981 -180878261 + MER57B LTR ERV1 1 434 0 13056 120 28 18 chr6 1536981 1537570 -180877672 + MER57B-int LTR ERV1 5541 6172 -159 2156 111 0 3 chr6 1537570 1537868 -180877374 + AluSq SINE Alu 1 297 -16 13056 120 28 18 chr6 1537868 1538030 -180877212 + MER57B-int LTR ERV1 6172 6331 0 2435 140 44 2 chr6 1538030 1538438 -180876804 + LTR49 LTR ERV1 1 425 -170 1005 123 0 0 chr6 1538442 1538588 -180876654 + AluSg/x SINE Alu 162 307 -5 700 174 112 12 chr6 1538588 1538749 -180876493 + LTR49 LTR ERV1 419 595 0 775 153 0 60 chr6 1538749 1538899 -180876343 - MLT1B LTR MaLR -249 141 1 2326 61 7 0 chr6 1539339 1539634 -180875608 + AluY SINE Alu 1 297 -14 2262 157 130 46 chr6 1540220 1540501 -180874741 - LTR49 LTR ERV1 0 595 339 1648 146 66 10 chr6 1540501 1540789 -180874453 + AluSx SINE Alu 1 304 -8 2262 157 130 46 chr6 1540789 1541054 -180874188 - LTR49 LTR ERV1 -256 339 3 4559 128 51 69 chr6 1541266 1541623 -180873619 - MER4D LTR ERV1 0 903 541 1945 139 0 0 chr6 1541623 1541918 -180873324 + AluJb SINE Alu 1 295 -17 4559 128 51 69 chr6 1541918 1542157 -180873085 - MER4D LTR ERV1 -362 541 299 2230 104 0 0 chr6 1542157 1542454 -180872788 - AluSq SINE Alu -16 297 1 4559 128 51 69 chr6 1542454 1542775 -180872467 - MER4D LTR ERV1 -604 299 1 1708 185 21 108 chr6 1542885 1543427 -180871815 - MER4A LTR ERV1 -3 695 161 2225 89 0 0 chr6 1543427 1543719 -180871523 - AluSq SINE Alu -12 301 10 1708 185 21 108 chr6 1543719 1543868 -180871374 - MER4A LTR ERV1 -537 161 1 296 288 27 51 chr6 1544127 1544351 -180870891 - L1MC4a LINE L1 -349 5825 5689 384 309 88 34 chr6 1545770 1545888 -180869354 - MIR SINE MIR 0 262 127 1949 217 65 26 chr6 1545888 1546423 -180868819 + LTR38 LTR ERV1 1 556 0 384 309 88 34 chr6 1546423 1546508 -180868734 - MIR SINE MIR -135 127 48 1050 153 5 16 chr6 1547301 1547491 -180867751 + L1MB3 LINE L1 5976 6163 -20 877 108 38 25 chr6 1547500 1548002 -180867240 + (TAGA)n Simple_repeat Simple_repeat 1 508 0 3212 147 31 7 chr6 1548526 1549111 -180866131 - L1MB3 LINE L1 0 6183 5585 3442 193 70 91 chr6 1549583 1550300 -180864942 + L1MD2 LINE L1 5336 6067 -292 4453 55 2 4 chr6 1550300 1550848 -180864394 + L1PA8 LINE L1 5622 6168 -4 198 0 0 0 chr6 1550851 1550873 -180864369 + (CA)n Simple_repeat Simple_repeat 1 22 0 3442 193 70 91 chr6 1550873 1551187 -180864055 + L1MD2 LINE L1 6069 6349 -10 226 271 34 0 chr6 1551511 1551570 -180863672 + (CATG)n Simple_repeat Simple_repeat 2 62 0 214 320 19 0 chr6 1601776 1601879 -180813363 + L2 LINE L2 2571 2675 -639 3989 170 33 15 chr6 1601889 1602549 -180812693 - L1MB3 LINE L1 -10 6173 5496 2442 51 0 0 chr6 1602549 1602844 -180812398 - AluY SINE Alu -14 297 3 3989 170 33 15 chr6 1602844 1602937 -180812305 - L1MB3 LINE L1 -687 5496 5406 893 243 195 52 chr6 1603409 1603890 -180811352 + L2 LINE L2 2745 3310 -3 2704 191 98 3 chr6 1605359 1605960 -180809282 - L1MB3 LINE L1 -1984 4162 3505 231 339 0 0 chr6 1606216 1606278 -180808964 + L2 LINE L2 3193 3254 -18 369 0 0 0 chr6 1606464 1606505 -180808737 + (CA)n Simple_repeat Simple_repeat 2 42 0 2003 85 43 3 chr6 1606507 1606789 -180808453 - AluSx SINE Alu -19 293 1 388 274 8 8 chr6 1606961 1607078 -180808164 - MIR SINE MIR -69 139 23 327 274 0 14 chr6 1607551 1607624 -180807618 + L2 LINE L2 3242 3313 0 1769 159 0 0 chr6 1608162 1608438 -180806804 + AluJb SINE Alu 1 276 -36 1139 120 98 0 chr6 1608542 1608726 -180806516 - MER2 DNA MER2_type -135 210 9 347 340 146 14 chr6 1608797 1609091 -180806151 - L1M4 LINE L1 -1303 4843 4511 201 39 0 0 chr6 1609125 1609151 -180806091 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 505 347 61 33 chr6 1609220 1609580 -180805662 - L1M4 LINE L1 -1839 4307 3938 1990 216 48 44 chr6 1609584 1610265 -180804977 + L1MC5 LINE L1 7184 7867 -94 1092 157 63 0 chr6 1610818 1611009 -180804233 - L1M3 LINE L1 -698 5482 5280 196 263 232 21 chr6 1611012 1611206 -180804036 + L2 LINE L2 2694 2928 -386 193 258 226 11 chr6 1611384 1611477 -180803765 + L2 LINE L2 3201 3313 0 285 226 16 16 chr6 1611531 1611593 -180803649 - MIR SINE MIR -8 254 193 234 170 85 0 chr6 1612311 1612358 -180802884 + L1MB3 LINE L1 5779 5829 -342 411 138 0 0 chr6 1612359 1612417 -180802825 + 7SLRNA srpRNA srpRNA 210 267 -53 186 310 126 0 chr6 1612700 1612787 -180802455 + L2 LINE L2 3123 3220 -52 2317 201 74 48 chr6 1612872 1613454 -180801788 + LTR31 LTR ERV1 1 597 -22 1613 101 0 0 chr6 1613908 1614125 -180801117 - AluSc SINE Alu -92 217 1 4012 180 43 10 chr6 1614135 1614919 -180800323 - L1MB3 LINE L1 0 6183 5374 2326 213 29 26 chr6 1614937 1615520 -180799722 - L1M3 LINE L1 -983 5163 4579 769 88 0 0 chr6 1615621 1615723 -180799519 + AluSg/x SINE Alu 200 301 -9 299 83 0 0 chr6 1615723 1615771 -180799471 + L1MB4 LINE L1 6133 6180 0 265 262 74 49 chr6 1616194 1616316 -180798926 + MIR3 SINE MIR 61 185 -23 1372 167 47 7 chr6 1618199 1618475 -180796767 + L1MB3 LINE L1 5887 6173 -10 1493 208 22 44 chr6 1619472 1619833 -180795409 - MLT1A1 LTR MaLR -12 353 1 1053 157 25 10 chr6 1619837 1620035 -180795207 + L1MB3 LINE L1 5938 6138 -45 2102 118 0 10 chr6 1620036 1620342 -180794900 + AluSx SINE Alu 1 303 -9 711 245 61 25 chr6 1620519 1620715 -180794527 - L1MC/D LINE L1 -2100 5708 5506 721 226 0 7 chr6 1620717 1620863 -180794379 - FAM SINE Alu -10 175 31 400 278 43 62 chr6 1620933 1621095 -180794147 - L1MC/D LINE L1 -2386 5422 5264 282 236 112 34 chr6 1621585 1621674 -180793568 + MIR SINE MIR 117 212 -50 1374 167 44 104 chr6 1621820 1622138 -180793104 + AluJo SINE Alu 3 301 -1 2290 94 7 0 chr6 1622144 1622453 -180792789 + AluY SINE Alu 1 311 0 622 176 0 15 chr6 1622750 1622886 -180792356 + CT-rich Low_complexity Low_complexity 2 135 0 782 243 0 0 chr6 1622903 1623055 -180792187 - AluJb SINE Alu -4 308 157 812 127 0 8 chr6 1623064 1623190 -180792052 + AluJo SINE Alu 27 151 -161 328 176 0 0 chr6 1623190 1623241 -180792001 - Alu SINE Alu -257 51 1 686 253 143 13 chr6 1623488 1623725 -180791517 - Charlie2 DNA MER1_type -2270 592 325 1093 170 38 0 chr6 1623761 1623973 -180791269 + L1MB3 LINE L1 5956 6175 -8 659 192 8 31 chr6 1624231 1624391 -180790851 - AluSg/x SINE Alu 0 314 158 334 345 79 52 chr6 1624662 1625182 -180790060 - L2 LINE L2 -201 3071 2522 328 315 69 42 chr6 1625182 1625398 -180789844 + MIR SINE MIR 3 224 -38 247 302 108 16 chr6 1625491 1625620 -180789622 - L2 LINE L2 -939 2375 2235 260 305 12 0 chr6 1626822 1626904 -180788338 - MER94 DNA DNA -4 130 48 1044 241 55 107 chr6 1626919 1627418 -180787824 + LTR45B LTR ERV1 3 512 -13 903 150 0 24 chr6 1627916 1628083 -180787159 + AluJo SINE Alu 135 297 -15 419 232 76 67 chr6 1628102 1628341 -180786901 - MLT1J1 LTR MaLR -64 386 141 466 259 77 18 chr6 1628573 1628743 -180786499 + L2 LINE L2 2145 2324 -990 186 43 0 0 chr6 1629002 1629025 -180786217 + (A)n Simple_repeat Simple_repeat 1 23 0 1306 26 0 0 chr6 1631468 1631620 -180783622 + L1PA4 LINE L1 6002 6153 -2 957 242 76 103 chr6 1632001 1632893 -180782349 - L1ME3A LINE L1 -99 6071 5190 1182 207 21 13 chr6 1632893 1633130 -180782112 + MER8 DNA MER2_type 1 239 0 957 242 76 103 chr6 1633130 1633342 -180781900 - L1ME3A LINE L1 -980 5190 4974 1494 206 92 36 chr6 1633350 1633796 -180781446 - L1ME2 LINE L1 -23 6141 5671 249 280 0 0 chr6 1635140 1635222 -180780020 - L1ME3A LINE L1 -2335 3811 3730 32 0 0 0 chr6 1635852 1635884 -180779358 + AT_rich Low_complexity Low_complexity 1 32 0 768 147 47 8 chr6 1635891 1636020 -180779222 + AluJb SINE Alu 1 134 -178 244 119 79 8 chr6 1636020 1636034 -180779208 + (TA)n Simple_repeat Simple_repeat 2 14 -122 234 0 0 0 chr6 1636034 1636060 -180779182 + (CA)n Simple_repeat Simple_repeat 2 27 0 244 119 79 8 chr6 1636060 1636171 -180779071 + (TA)n Simple_repeat Simple_repeat 14 136 0 955 159 12 6 chr6 1636180 1636343 -180778899 + AluSg/x SINE Alu 129 292 -20 976 183 61 0 chr6 1636383 1636580 -180778662 - MER2 DNA MER2_type -136 209 1 883 264 21 74 chr6 1639693 1639802 -180775440 - L2 LINE L2 -1405 1909 1796 1714 130 0 60 chr6 1639802 1640117 -180775125 + AluSx SINE Alu 1 296 -16 883 264 21 74 chr6 1640117 1640428 -180774814 - L2 LINE L2 -1518 1796 1511 284 254 0 0 chr6 1640510 1640573 -180774669 - L3 LINE CR1 -170 1407 1345 185 386 65 11 chr6 1640639 1640823 -180774419 + L2 LINE L2 2824 3017 -255 240 35 0 0 chr6 1641761 1641790 -180773452 + (A)n Simple_repeat Simple_repeat 1 29 0 190 279 177 0 chr6 1642595 1642674 -180772568 - MIR3 SINE MIR -1 207 115 211 294 149 52 chr6 1642778 1642972 -180772270 + L3 LINE CR1 1227 1439 -138 405 232 45 9 chr6 1643153 1643265 -180771977 - L1MB7 LINE L1 -31 6153 6038 362 268 106 8 chr6 1645294 1645417 -180769825 - MIR SINE MIR -46 216 82 285 274 29 39 chr6 1646052 1646154 -180769088 - MIR SINE MIR -44 218 118 340 150 0 0 chr6 1647010 1647070 -180768172 + L1MC2 LINE L1 6272 6331 -13 342 164 33 0 chr6 1648424 1648485 -180766757 - MADE1 DNA Mariner 0 80 18 2158 112 0 0 chr6 1648491 1648786 -180766456 + AluSc SINE Alu 1 295 -14 287 70 23 0 chr6 1648789 1648832 -180766410 - MADE1 DNA Mariner -34 46 3 2253 90 0 16 chr6 1650512 1650824 -180764418 - AluSx SINE Alu -5 307 1 189 83 0 0 chr6 1651347 1651371 -180763871 + L3 LINE CR1 440 463 -1114 1952 126 11 0 chr6 1651720 1652026 -180763216 - AluSx SINE Alu 0 309 1 836 211 11 17 chr6 1652329 1652509 -180762733 - L1M4 LINE L1 -1945 4201 4023 2287 74 0 7 chr6 1652509 1652806 -180762436 + AluY SINE Alu 1 295 -16 1144 88 0 2 chr6 1652806 1652959 -180762283 + L1PA5 LINE L1 3294 3445 -2701 9309 49 4 22 chr6 1652959 1654896 -180760346 + L1PA5 LINE L1 4228 6152 -2 1144 88 0 2 chr6 1654896 1654914 -180760328 + L1PA5 LINE L1 3445 3462 -2684 870 202 56 20 chr6 1655032 1655230 -180760012 + L1MCa LINE L1 312 516 -5910 829 262 90 11 chr6 1655222 1655501 -180759741 - L1MCa LINE L1 -6105 321 21 * 180 158 0 0 chr6 1656871 1656909 -180758333 + A-rich Low_complexity Low_complexity 5 42 0 335 230 9 0 chr6 1657991 1658104 -180757138 + (CA)n Simple_repeat Simple_repeat 2 115 0 1496 171 4 4 chr6 1658678 1658935 -180756307 - AluJo SINE Alu -55 257 1 1438 35 0 0 chr6 1659875 1660045 -180755197 - AluY SINE Alu -141 170 1 222 385 77 0 chr6 1660665 1660821 -180754421 + MIR SINE MIR 17 184 -78 1667 232 113 18 chr6 1660845 1661448 -180753794 + L1ME1 LINE L1 5502 6161 -5 1740 108 134 11 chr6 1661738 1662006 -180753236 + AluSx SINE Alu 1 301 -1 21 0 0 0 chr6 1662107 1662128 -180753114 + AT_rich Low_complexity Low_complexity 1 21 0 184 326 97 35 chr6 1663678 1663822 -180751420 - L3b LINE CR1 -55 1528 1376 219 269 134 74 chr6 1663945 1664094 -180751148 - MIR SINE MIR -21 187 30 322 311 16 16 chr6 1664158 1664280 -180750962 - L2 LINE L2 -32 3281 3160 287 331 86 41 chr6 1664681 1664926 -180750316 + L2 LINE L2 2840 3095 -177 197 43 0 0 chr6 1665059 1665082 -180750160 + (T)n Simple_repeat Simple_repeat 1 23 0 339 333 215 4 chr6 1665368 1665596 -180749646 + L3 LINE CR1 829 1104 -473 474 333 77 48 chr6 1665658 1665931 -180749311 - L2 LINE L2 -5 3267 2987 691 223 22 119 chr6 1666135 1666404 -180748838 - MIR SINE MIR -2 260 18 1047 166 0 0 chr6 1666705 1666987 -180748255 + (TGGA)n Simple_repeat Simple_repeat 1 282 0 220 189 0 0 chr6 1667004 1667041 -180748201 + GA-rich Low_complexity Low_complexity 1 37 0 335 296 151 20 chr6 1667041 1667193 -180748049 - MIR3 SINE MIR -7 201 30 691 297 62 68 chr6 1667232 1667616 -180747626 - MLT1I LTR MaLR -3 406 25 270 317 110 24 chr6 1668098 1668262 -180746980 - MLT1I LTR MaLR 0 409 232 2728 112 60 0 chr6 1668551 1668953 -180746289 - MSTA LTR MaLR -2 426 1 569 276 35 0 chr6 1669041 1669211 -180746031 + MIR SINE MIR 87 262 0 32 26 0 0 chr6 1669555 1669594 -180745648 + AT_rich Low_complexity Low_complexity 1 39 0 1398 156 30 50 chr6 1669594 1669758 -180745484 - AluJo SINE Alu -16 296 139 1722 87 9 0 chr6 1669758 1669988 -180745254 - AluSp SINE Alu -11 302 71 1398 156 30 50 chr6 1669988 1670125 -180745117 - AluJo SINE Alu -173 139 1 240 257 29 0 chr6 1670676 1670746 -180744496 + LTR67 LTR ERVL 431 502 -55 626 268 168 9 chr6 1670878 1671277 -180743965 + Charlie2 DNA MER1_type 74 589 -2273 915 221 53 90 chr6 1671320 1671520 -180743722 + Charlie2 DNA MER1_type 2030 2236 -626 1515 162 49 8 chr6 1671520 1671785 -180743457 + AluJo SINE Alu 1 276 -36 915 221 53 90 chr6 1671785 1672072 -180743170 + Charlie2 DNA MER1_type 2236 2499 -363 1267 205 52 46 chr6 1672072 1672399 -180742843 + L1MB8 LINE L1 5849 6177 -1 1564 171 3 24 chr6 1672408 1672700 -180742542 + AluJo SINE Alu 1 286 -26 204 40 0 0 chr6 1672709 1672734 -180742508 + (CA)n Simple_repeat Simple_repeat 2 26 0 455 254 30 60 chr6 1672734 1672959 -180742283 + Charlie2 DNA MER1_type 2502 2721 -141 1600 273 133 4 chr6 1672960 1673455 -180741787 + MER69 DNA AcHobo 1 559 -667 226 242 152 38 chr6 1673425 1673557 -180741685 + MER69 DNA AcHobo 2254 2400 -126 * 359 134 20 174 chr6 1673549 1673615 -180741627 + Charlie2 DNA MER1_type 2736 2768 -94 1649 114 0 0 chr6 1673615 1673843 -180741399 + AluSc SINE Alu 65 292 -17 359 134 20 174 chr6 1673843 1673925 -180741317 + Charlie2 DNA MER1_type 2768 2861 -1 1794 285 88 51 chr6 1674037 1674363 -180740879 + HERVL LTR ERVL 2050 2362 -3402 2279 93 3 0 chr6 1674363 1674673 -180740569 + AluY SINE Alu 1 311 0 1794 285 88 51 chr6 1674673 1675171 -180740071 + HERVL LTR ERVL 2362 2905 -2859 360 43 0 0 chr6 1675283 1675329 -180739913 + (TG)n Simple_repeat Simple_repeat 1 46 0 1406 149 29 58 chr6 1675391 1675700 -180739542 + AluJo SINE Alu 1 300 -12 271 231 103 57 chr6 1675694 1675788 -180739454 + HERVL LTR ERVL 3132 3229 -2535 391 328 54 17 chr6 1675902 1676148 -180739094 + HERVL LTR ERVL 5111 5369 -221 442 313 20 7 chr6 1677000 1677150 -180738092 + LTR67 LTR ERVL 385 536 -21 207 172 0 69 chr6 1677554 1677612 -180737630 + CT-rich Low_complexity Low_complexity 3 56 0 2242 79 3 7 chr6 1678249 1678553 -180736689 + AluSp SINE Alu 1 303 -10 339 44 0 0 chr6 1679661 1679706 -180735536 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 804 166 14 21 chr6 1679706 1679851 -180735391 - FRAM SINE Alu -32 144 1 308 299 39 26 chr6 1679893 1680047 -180735195 - MIR SINE MIR -19 243 88 2164 97 10 0 chr6 1680324 1680623 -180734619 + AluSx SINE Alu 1 302 -10 30 27 0 0 chr6 1680623 1680660 -180734582 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr6 1680900 1680925 -180734317 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1987 151 143 5 chr6 1681064 1681436 -180733806 + MSTA LTR MaLR 6 428 0 21 36 0 0 chr6 1681455 1681483 -180733759 + AT_rich Low_complexity Low_complexity 1 28 0 1866 151 0 0 chr6 1681483 1681768 -180733474 - AluSx SINE Alu -27 285 1 1481 229 65 26 chr6 1681771 1682338 -180732904 - L1MC5 LINE L1 -58 7903 7315 334 305 124 29 chr6 1682484 1682668 -180732574 + MIR SINE MIR 10 208 -54 789 204 56 45 chr6 1682691 1683081 -180732161 - MSTD LTR MaLR -52 344 1 971 185 49 19 chr6 1683710 1683915 -180731327 + MIR SINE MIR 24 234 -28 245 325 112 48 chr6 1684140 1684346 -180730896 + L2 LINE L2 2945 3163 -109 411 301 30 63 chr6 1684660 1684962 -180730280 - L1ME3A LINE L1 -232 5938 5647 275 211 35 0 chr6 1684986 1685043 -180730199 + L2 LINE L2 3214 3272 0 268 269 86 107 chr6 1685696 1685893 -180729349 - MLT1L LTR MaLR -415 200 8 2370 69 3 28 chr6 1686819 1687138 -180728104 + AluY SINE Alu 1 311 0 1000 256 78 83 chr6 1687219 1688013 -180727229 + L1MEc LINE L1 827 1617 -4779 1601 166 29 16 chr6 1688013 1688321 -180726921 + AluJo SINE Alu 1 312 0 1000 256 78 83 chr6 1688321 1688497 -180726745 + L1MEc LINE L1 1617 1792 -4604 1398 208 46 8 chr6 1688558 1688909 -180726333 - L1M4 LINE L1 -1394 5563 5200 816 92 108 0 chr6 1688933 1689053 -180726189 + AluSq/x SINE Alu 1 133 -180 2167 113 3 0 chr6 1689078 1689380 -180725862 + AluSp SINE Alu 1 303 -10 6002 114 28 3 chr6 1689387 1689600 -180725642 - L1M1 LINE L1 -4099 3466 3260 1771 164 13 13 chr6 1689600 1689904 -180725338 - AluJb SINE Alu -6 306 3 6002 114 28 3 chr6 1689904 1690648 -180724594 - L1M1 LINE L1 -4305 3260 2485 5478 239 38 32 chr6 1690653 1692186 -180723056 - L1M4 LINE L1 -2451 4506 3018 807 50 0 0 chr6 1692186 1692287 -180722955 + L1PA5 LINE L1 6053 6153 -1 5478 239 38 32 chr6 1692287 1692833 -180722409 - L1M4 LINE L1 -3939 3018 2476 7653 223 52 20 chr6 1693013 1695298 -180719944 - L1M4 LINE L1 -4550 2409 9 784 239 117 4 chr6 1695454 1695823 -180719419 + MLT1G LTR MaLR 144 589 -1 815 218 88 10 chr6 1696455 1696648 -180718594 - Charlie8 DNA MER1_type -2209 208 1 244 292 0 0 chr6 1701919 1701991 -180713251 + L3 LINE CR1 1080 1151 -426 254 309 95 16 chr6 1704271 1704523 -180710719 + L1ME LINE L1 5615 5886 -284 2047 124 7 7 chr6 1704540 1704839 -180710403 + AluSq SINE Alu 1 299 -14 906 330 67 53 chr6 1705074 1705223 -180710019 + L1MC4a LINE L1 4410 4556 -1590 2247 93 0 3 chr6 1705223 1705525 -180709717 + AluSx SINE Alu 1 301 -11 906 330 67 53 chr6 1705525 1706142 -180709100 + L1MC4a LINE L1 4556 5186 -960 340 162 20 40 chr6 1706159 1706258 -180708984 + L1MC5 LINE L1 7636 7732 -229 216 214 0 0 chr6 1706274 1706330 -180708912 + (CA)n Simple_repeat Simple_repeat 1 56 0 1445 277 97 11 chr6 1706448 1707113 -180708129 + L1MC4a LINE L1 5175 5398 -748 1779 138 13 16 chr6 1709231 1709543 -180705699 - AluJo SINE Alu -1 311 1 354 211 24 8 chr6 1709747 1710002 -180705240 + (TG)n Simple_repeat Simple_repeat 1 259 0 1996 138 0 0 chr6 1710907 1711203 -180704039 - AluSx SINE Alu -16 296 1 252 228 152 51 chr6 1711205 1711284 -180703958 - L2 LINE L2 -2 3270 3184 224 265 20 0 chr6 1711575 1711624 -180703618 + L2 LINE L2 3240 3289 -24 195 42 0 0 chr6 1711721 1711745 -180703497 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 231 271 106 0 chr6 1712460 1712545 -180702697 - MER103 DNA DNA -58 108 15 1443 230 83 49 chr6 1713338 1713606 -180701636 - MER82 DNA MER2_type -203 450 160 1672 167 16 32 chr6 1713606 1713918 -180701324 + AluJo SINE Alu 1 307 -5 1443 230 83 49 chr6 1713918 1714080 -180701162 - MER82 DNA MER2_type -493 160 5 453 19 0 0 chr6 1714902 1714956 -180700286 + (CA)n Simple_repeat Simple_repeat 1 54 0 1720 181 48 0 chr6 1715012 1715343 -180699899 + L1PA16 LINE L1 5802 6148 -18 552 245 10 50 chr6 1715348 1715548 -180699694 + L1MC4 LINE L1 7472 7663 -379 231 114 0 0 chr6 1716413 1716448 -180698794 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 312 54 48 chr6 1718206 1718392 -180696850 + Charlie2 DNA MER1_type 30 216 -2566 498 165 0 0 chr6 1719199 1719278 -180695964 + HY4 scRNA scRNA 5 83 -10 306 0 0 0 chr6 1723076 1723110 -180692132 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr6 1723109 1723129 -180692113 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 246 259 0 0 chr6 1723129 1723187 -180692055 + (TA)n Simple_repeat Simple_repeat 2 59 0 203 138 0 0 chr6 1725086 1725115 -180690127 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 191 270 48 0 chr6 1725546 1725609 -180689633 + L2 LINE L2 3207 3272 0 399 268 108 13 chr6 1725616 1725773 -180689469 + MER104 DNA Tc2 2 173 -7 417 288 78 13 chr6 1725798 1725951 -180689291 + MIR SINE MIR 80 242 -20 48 32 0 0 chr6 1732265 1732327 -180682915 + GC_rich Low_complexity Low_complexity 1 62 0 42 20 0 0 chr6 1732570 1732619 -180682623 + GC_rich Low_complexity Low_complexity 1 49 0 252 119 0 75 chr6 1732903 1732981 -180682261 + (CCCGG)n Simple_repeat Simple_repeat 1 72 0 31 0 0 0 chr6 1733108 1733139 -180682103 + GC_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chr6 1733609 1733650 -180681592 + GC_rich Low_complexity Low_complexity 1 41 0 32 26 0 0 chr6 1733899 1733938 -180681304 + GC_rich Low_complexity Low_complexity 1 39 0 221 120 20 20 chr6 1734153 1734203 -180681039 + (CGG)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr6 1734269 1734294 -180680948 + GC_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr6 1734368 1734392 -180680850 + (CGG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr6 1734492 1734512 -180680730 + (CGG)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr6 1737121 1737144 -180678098 + GC_rich Low_complexity Low_complexity 1 23 0 220 220 20 0 chr6 1741279 1741329 -180673913 + GA-rich Low_complexity Low_complexity 5 55 0 254 327 13 0 chr6 1744985 1745141 -180670101 + (TG)n Simple_repeat Simple_repeat 1 158 0 261 312 13 0 chr6 1745780 1745857 -180669385 + L2 LINE L2 3236 3313 0 243 0 0 0 chr6 1747413 1747440 -180667802 + (T)n Simple_repeat Simple_repeat 1 27 0 257 232 50 99 chr6 1747786 1747967 -180667275 + MER112 DNA MER1_type 29 200 -60 255 229 0 0 chr6 1748269 1748330 -180666912 + GA-rich Low_complexity Low_complexity 4 64 0 206 152 0 22 chr6 1754220 1754266 -180660976 + CT-rich Low_complexity Low_complexity 2 46 0 811 253 69 30 chr6 1754865 1755169 -180660073 + L1ME2 LINE L1 5839 6154 -10 1861 171 3 10 chr6 1755180 1755478 -180659764 + AluJo SINE Alu 1 296 -16 189 282 175 10 chr6 1755551 1755654 -180659588 + MIR SINE MIR 100 219 -43 292 370 146 0 chr6 1755969 1756331 -180658911 - L2 LINE L2 -48 3265 2851 471 341 41 25 chr6 1757235 1757549 -180657693 - L2 LINE L2 -562 2752 2434 253 333 81 16 chr6 1760431 1760554 -180654688 - MIR SINE MIR -128 134 4 271 333 74 22 chr6 1761927 1762062 -180653180 - L2 LINE L2 -219 3053 2912 226 227 109 126 chr6 1762158 1762190 -180653052 + MIR SINE MIR 22 53 -209 1709 151 37 0 chr6 1762190 1762486 -180652756 + AluJb SINE Alu 1 306 0 226 227 109 126 chr6 1762486 1762571 -180652671 + MIR SINE MIR 53 138 -124 229 280 173 33 chr6 1763264 1763414 -180651828 - L2 LINE L2 -54 3259 3089 310 115 33 0 chr6 1764289 1764350 -180650892 + CT-rich Low_complexity Low_complexity 2 64 0 2242 104 0 25 chr6 1764736 1765053 -180650189 - AluSx SINE Alu -3 309 1 246 218 103 0 chr6 1766089 1766167 -180649075 + L1MA8 LINE L1 5961 6046 -245 877 236 46 4 chr6 1766177 1766414 -180648828 + L1MB8 LINE L1 5932 6178 0 322 268 57 81 chr6 1767406 1767515 -180647727 - MIR SINE MIR -55 153 46 2338 79 0 13 chr6 1767515 1767818 -180647424 - AluSg SINE Alu -11 299 1 322 268 57 81 chr6 1767818 1767831 -180647411 - MIR SINE MIR -162 46 34 273 304 161 0 chr6 1768499 1768611 -180646631 + L2 LINE L2 3177 3306 -7 1397 167 151 12 chr6 1769017 1769268 -180645974 - AluJo SINE Alu -16 286 1 183 350 30 10 chr6 1770377 1770477 -180644765 + L2 LINE L2 2940 3041 -231 331 228 53 61 chr6 1772600 1772714 -180642528 + MIR3 SINE MIR 78 190 -18 1905 143 3 19 chr6 1773158 1773465 -180641777 - AluSx SINE Alu -10 302 1 241 324 115 14 chr6 1774295 1774434 -180640808 + MIR SINE MIR 110 262 0 2353 76 0 3 chr6 1824853 1825142 -180590100 - AluY SINE Alu -23 288 1 949 164 12 6 chr6 1827932 1828097 -180587145 + MLT1D LTR MaLR 340 505 0 25 31 0 0 chr6 1828475 1828507 -180586735 + AT_rich Low_complexity Low_complexity 1 32 0 230 54 0 27 chr6 1829586 1829623 -180585619 + (TA)n Simple_repeat Simple_repeat 2 37 0 2230 98 0 7 chr6 1832887 1833068 -180582174 - AluY SINE Alu -8 303 123 180 0 0 0 chr6 1833068 1833088 -180582154 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2230 98 0 7 chr6 1833088 1833211 -180582031 - AluY SINE Alu -188 123 1 413 291 0 10 chr6 1833233 1833336 -180581906 + L2 LINE L2 3156 3257 -15 771 243 37 28 chr6 1833341 1833555 -180581687 - MIR SINE MIR -9 253 38 2126 58 0 12 chr6 1834154 1834411 -180580831 - AluY SINE Alu -15 296 43 2285 84 7 7 chr6 1836260 1836556 -180578686 - AluSp SINE Alu -17 296 1 217 359 0 16 chr6 1836573 1836637 -180578605 - L2 LINE L2 -92 3180 3118 212 119 34 68 chr6 1837667 1837726 -180577516 + (TTAA)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr6 1839046 1839070 -180576172 + AT_rich Low_complexity Low_complexity 1 24 0 498 279 0 0 chr6 1839563 1839674 -180575568 - MER58C DNA MER1_type -2 213 103 201 245 0 20 chr6 1839674 1839723 -180575519 + CT-rich Low_complexity Low_complexity 3 50 0 199 47 0 70 chr6 1839771 1839814 -180575428 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 931 209 138 12 chr6 1841031 1841284 -180573958 + HAL1 LINE L1 3 287 -2220 2904 264 129 52 chr6 1841366 1842870 -180572372 + HAL1 LINE L1 473 2133 -374 2401 81 0 3 chr6 1842870 1843178 -180572064 + AluSc SINE Alu 1 307 -2 2904 264 129 52 chr6 1843178 1843427 -180571815 + HAL1 LINE L1 2133 2361 -146 1593 139 9 118 chr6 1844359 1844690 -180570552 + AluSx SINE Alu 1 295 -17 487 329 50 25 chr6 1846083 1846366 -180568876 - L2 LINE L2 -13 3259 2970 219 245 19 0 chr6 1847141 1847194 -180568048 + GA-rich Low_complexity Low_complexity 1 54 0 937 106 17 11 chr6 1848312 1848666 -180566576 + (CA)n Simple_repeat Simple_repeat 1 356 0 966 109 14 16 chr6 1848684 1849042 -180566200 + (CA)n Simple_repeat Simple_repeat 1 357 0 339 244 11 0 chr6 1850047 1850137 -180565105 + MIR SINE MIR 53 143 -119 2457 84 0 0 chr6 1851099 1851396 -180563846 + AluSx SINE Alu 1 297 -15 421 158 49 0 chr6 1851760 1851842 -180563400 - Charlie5 DNA MER1_type -1366 1246 1161 2142 162 21 9 chr6 1851873 1852298 -180562944 - L1MA6 LINE L1 -6 6294 5865 2521 90 0 3 chr6 1852353 1852665 -180562577 + AluSx SINE Alu 1 311 -1 206 170 0 57 chr6 1852690 1852743 -180562499 + A-rich Low_complexity Low_complexity 1 50 0 2323 101 0 0 chr6 1852748 1853044 -180562198 - AluSg SINE Alu -14 296 1 258 367 35 6 chr6 1853549 1853718 -180561524 - MER5A DNA MER1_type 0 189 16 2339 38 42 7 chr6 1854096 1854385 -180560857 + AluY SINE Alu 1 299 -12 25 0 0 0 chr6 1854954 1854979 -180560263 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr6 1855791 1855828 -180559414 + (CA)n Simple_repeat Simple_repeat 2 38 0 2346 85 0 0 chr6 1857514 1857824 -180557418 - AluSg SINE Alu 0 310 1 207 220 0 0 chr6 1858284 1858334 -180556908 + (CA)n Simple_repeat Simple_repeat 2 51 0 233 278 88 49 chr6 1859022 1859306 -180555936 - HAL1b LINE L1 -1036 312 18 692 176 101 14 chr6 1859409 1859557 -180555685 - MER58B DNA MER1_type 0 341 181 1976 134 13 22 chr6 1860130 1860443 -180554799 + AluSx SINE Alu 1 310 -2 1295 213 14 14 chr6 1860658 1860945 -180554297 - AluJo SINE Alu -15 297 11 30399 98 28 27 chr6 1861116 1862308 -180552934 + L1P3 LINE L1 11 1201 -5286 2184 115 0 0 chr6 1862308 1862616 -180552626 - AluSc SINE Alu 0 308 1 30399 98 28 27 chr6 1862616 1866996 -180548246 + L1P3 LINE L1 1201 5712 -775 591 249 173 76 chr6 1867023 1867090 -180548152 - MLT1H LTR MaLR 0 555 496 2290 95 0 26 chr6 1867090 1867396 -180547846 - AluSq SINE Alu -15 298 1 591 249 173 76 chr6 1867396 1867869 -180547373 - MLT1H LTR MaLR -59 496 1 1100 231 77 3 chr6 1868607 1868906 -180546336 - MER33 DNA MER1_type 0 324 4 241 171 0 0 chr6 1869335 1869376 -180545866 - MER5A DNA MER1_type -5 184 144 374 252 101 25 chr6 1869379 1869538 -180545704 - MER5A DNA MER1_type -18 171 1 195 277 77 0 chr6 1869543 1869608 -180545634 + MIR SINE MIR 23 92 -116 680 80 0 0 chr6 1869616 1869704 -180545538 + AluS SINE Alu 4 91 -221 1265 102 0 0 chr6 1869753 1869919 -180545323 - AluSg/x SINE Alu -18 294 129 451 314 6 13 chr6 1870084 1870240 -180545002 - MIR3 SINE MIR -12 196 42 255 192 20 91 chr6 1870392 1870491 -180544751 - L2 LINE L2 -12 3260 3169 236 252 158 31 chr6 1876397 1876524 -180538718 - MIR3 SINE MIR -63 145 3 1288 139 130 0 chr6 1879393 1879601 -180535641 + MER46A DNA MER2_type 1 235 -1 2001 115 3 73 chr6 1880520 1880850 -180534392 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 1881858 1881880 -180533362 + AT_rich Low_complexity Low_complexity 1 22 0 310 262 124 43 chr6 1882136 1882355 -180532887 + MIR SINE MIR 12 257 -5 255 261 159 11 chr6 1886160 1886248 -180528994 - MER91B DNA MER1_type 0 190 90 307 263 79 0 chr6 1886264 1886340 -180528902 - MER91B DNA MER1_type -61 129 48 180 375 58 10 chr6 1887206 1887230 -180528012 + MER5A DNA MER1_type 4 25 -164 1654 163 46 18 chr6 1887230 1887512 -180527730 + AluJo SINE Alu 1 290 -22 180 375 58 10 chr6 1887512 1887591 -180527651 + MER5A DNA MER1_type 25 112 -77 354 233 160 33 chr6 1891067 1891217 -180524025 + MIR SINE MIR 82 250 -12 271 337 51 10 chr6 1893574 1893672 -180521570 - MIR SINE MIR -13 249 148 1762 158 7 11 chr6 1893696 1893975 -180521267 + AluJb SINE Alu 1 278 -34 189 107 0 0 chr6 1893980 1894008 -180521234 + (GGAGA)n Simple_repeat Simple_repeat 2 29 0 199 359 136 56 chr6 1894110 1894308 -180520934 + L2 LINE L2 3019 3232 -40 1784 88 4 0 chr6 1895016 1895244 -180519998 + AluSg/x SINE Alu 83 311 -1 371 247 315 0 chr6 1896171 1896333 -180518909 - MLT1G LTR MaLR -24 566 354 208 280 112 0 chr6 1898794 1898901 -180516341 + MIR SINE MIR 36 154 -108 22 0 0 0 chr6 1899605 1899627 -180515615 + AT_rich Low_complexity Low_complexity 1 22 0 948 253 110 67 chr6 1899684 1900305 -180514937 - MER21B LTR ERV1 -154 709 57 1957 151 6 13 chr6 1900350 1900662 -180514580 - AluJb SINE Alu -2 310 1 194 330 39 50 chr6 1900808 1900987 -180514255 - L3 LINE CR1 -697 880 704 390 302 0 26 chr6 1901170 1901286 -180513956 - MIR SINE MIR -81 181 69 1953 183 103 19 chr6 1901647 1902057 -180513185 + MLT1D LTR MaLR 1 456 -49 1701 183 35 42 chr6 1902057 1902434 -180512808 - MLT1A2 LTR MaLR 0 374 1 1953 183 103 19 chr6 1902434 1902487 -180512755 + MLT1D LTR MaLR 456 503 -2 1739 272 119 53 chr6 1902647 1903850 -180511392 - HAL1 LINE L1 0 2507 1226 216 213 0 0 chr6 1903912 1903959 -180511283 + L2 LINE L2 2154 2200 -1114 1729 142 0 47 chr6 1905733 1906029 -180509213 + AluJb SINE Alu 6 287 -25 235 184 0 20 chr6 1906257 1906306 -180508936 + (TA)n Simple_repeat Simple_repeat 2 49 0 355 281 22 30 chr6 1907227 1907362 -180507880 + MER5A DNA MER1_type 51 184 -5 1849 161 7 0 chr6 1907830 1908122 -180507120 + MER1B DNA MER1_type 1 294 -45 665 261 22 17 chr6 1908392 1908572 -180506670 - MIR SINE MIR -38 224 44 423 0 0 0 chr6 1909062 1909109 -180506133 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr6 1910791 1910813 -180504429 + AT_rich Low_complexity Low_complexity 1 22 0 282 320 8 23 chr6 1911078 1911206 -180504036 + MIR SINE MIR 48 173 -89 1756 115 3 89 chr6 1911258 1911562 -180503680 - AluSx SINE Alu -9 303 26 225 0 0 0 chr6 1914398 1914423 -180500819 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 1916023 1916046 -180499196 + AT_rich Low_complexity Low_complexity 1 23 0 572 281 14 0 chr6 1916268 1916407 -180498835 + Charlie1 DNA MER1_type 1 141 -2620 1130 174 134 13 chr6 1916410 1916709 -180498533 + Charlie1 DNA MER1_type 2427 2761 0 801 185 0 0 chr6 1916823 1916953 -180498289 + FLAM_A SINE Alu 2 131 -2 357 109 0 0 chr6 1917264 1917319 -180497923 + (CA)n Simple_repeat Simple_repeat 2 56 0 1714 168 4 0 chr6 1917875 1918143 -180497099 - AluJo SINE Alu -20 292 24 307 261 43 0 chr6 1918308 1918377 -180496865 + L2 LINE L2 3146 3217 -55 1264 242 50 25 chr6 1918432 1918874 -180496368 + L1M4 LINE L1 4852 5304 -842 26 0 0 0 chr6 1919490 1919516 -180495726 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 1919729 1919752 -180495490 + (TG)n Simple_repeat Simple_repeat 2 24 0 203 274 66 47 chr6 1920870 1920976 -180494266 - L2 LINE L2 -23 3290 3183 2100 120 38 0 chr6 1921115 1921407 -180493835 - AluSx SINE Alu -9 303 1 256 280 175 66 chr6 1922752 1923163 -180492079 - L2 LINE L2 -4 3309 2854 293 322 9 26 chr6 1923294 1923409 -180491833 + GA-rich Low_complexity Low_complexity 3 115 0 1498 172 32 36 chr6 1923765 1924073 -180491169 + AluJo SINE Alu 1 307 -5 21 57 0 0 chr6 1924075 1924110 -180491132 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 1925506 1925534 -180489708 + AT_rich Low_complexity Low_complexity 1 28 0 190 304 18 0 chr6 1927008 1927064 -180488178 - L2 LINE L2 -4 3309 3253 227 79 26 0 chr6 1927933 1927971 -180487271 + (CA)n Simple_repeat Simple_repeat 2 40 0 2453 89 0 0 chr6 1929150 1929452 -180485790 + AluSq SINE Alu 1 302 -11 311 192 14 0 chr6 1929513 1929586 -180485656 + (TA)n Simple_repeat Simple_repeat 1 74 0 194 347 56 0 chr6 1929641 1929713 -180485529 + MIR SINE MIR 47 122 -140 234 136 0 0 chr6 1929859 1929903 -180485339 + (CA)n Simple_repeat Simple_repeat 1 44 0 2240 107 3 3 chr6 1930302 1930601 -180484641 + AluSq SINE Alu 1 299 -14 198 0 0 0 chr6 1930601 1930623 -180484619 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr6 1930981 1931002 -180484240 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr6 1932428 1932463 -180482779 + (T)n Simple_repeat Simple_repeat 1 35 0 355 303 128 38 chr6 1935412 1935637 -180479605 + MIR SINE MIR 15 262 0 284 325 41 16 chr6 1935705 1935828 -180479414 + L2 LINE L2 3174 3299 -14 2853 173 52 12 chr6 1936283 1936551 -180478691 - MER7C DNA MER2_type -2426 602 346 1936 145 0 22 chr6 1936551 1936862 -180478380 + AluSx SINE Alu 1 304 -8 2853 173 52 12 chr6 1936862 1937171 -180478071 - MER7C DNA MER2_type -2682 346 2 1407 201 24 21 chr6 1937609 1937897 -180477345 + AluJo SINE Alu 1 289 -23 420 20 0 0 chr6 1937903 1937952 -180477290 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 231 0 15 chr6 1937959 1938024 -180477218 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 4454 196 61 16 chr6 1938475 1939630 -180475612 + L1M4c LINE L1 546 1752 -4632 2218 148 45 28 chr6 1939646 1940072 -180475170 - Tigger2a DNA MER2_type -1 433 1 212 353 8 0 chr6 1940072 1940205 -180475037 + (TA)n Simple_repeat Simple_repeat 1 134 0 1530 197 3 19 chr6 1940253 1940563 -180474679 - AluJb SINE Alu -7 305 1 968 181 10 0 chr6 1940862 1941055 -180474187 - MER3 DNA MER1_type -3 206 12 745 171 101 0 chr6 1941074 1941232 -180474010 - MER20 DNA MER1_type 0 219 46 22 0 0 0 chr6 1942817 1942839 -180472403 + AT_rich Low_complexity Low_complexity 1 22 0 452 131 0 0 chr6 1942906 1942967 -180472275 + AluJo SINE Alu 10 70 -242 227 69 0 0 chr6 1942969 1942998 -180472244 - Alu SINE Alu -196 106 78 1349 144 5 14 chr6 1943004 1943212 -180472030 + AluJo SINE Alu 72 277 -35 207 0 0 0 chr6 1943951 1943974 -180471268 + (T)n Simple_repeat Simple_repeat 1 23 0 200 268 0 0 chr6 1944334 1944375 -180470867 + polypyrimidine Low_complexity Low_complexity 5 45 0 22 56 0 0 chr6 1944848 1944884 -180470358 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr6 1945839 1945870 -180469372 + AT_rich Low_complexity Low_complexity 1 31 0 183 328 31 47 chr6 1945932 1946060 -180469182 - L2 LINE L2 -197 3116 2991 1902 88 74 14 chr6 1946663 1946991 -180468251 - AluY SINE Alu 0 311 1 233 200 50 17 chr6 1951145 1951205 -180464037 + L2 LINE L2 3249 3310 -3 320 332 119 20 chr6 1952845 1953047 -180462195 + L2 LINE L2 2827 3048 -224 384 238 109 32 chr6 1953364 1953552 -180461690 + MLT1L LTR MaLR 299 606 -9 1561 165 33 15 chr6 1953657 1953930 -180461312 + AluJb SINE Alu 1 278 -34 378 0 0 0 chr6 1953934 1953976 -180461266 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 1937 161 0 3 chr6 1954310 1954608 -180460634 + AluSx SINE Alu 1 297 -15 318 345 45 8 chr6 1954876 1955076 -180460166 - MIR SINE MIR -3 259 3 214 225 0 0 chr6 1956056 1956096 -180459146 - MIR SINE MIR -102 106 67 2187 126 21 12 chr6 1956413 1956747 -180458495 - MER1B DNA MER1_type 0 337 1 2100 149 0 9 chr6 1956902 1957217 -180458025 - AluJb SINE Alu 0 312 1 1644 161 30 0 chr6 1957906 1958173 -180457069 - AluJo SINE Alu -37 275 1 241 238 48 0 chr6 1958820 1958883 -180456359 - L2 LINE L2 -253 3060 2995 188 239 195 58 chr6 1959006 1959232 -180456010 + L2 LINE L2 2804 3060 -212 217 330 31 31 chr6 1959430 1959654 -180455588 - L2 LINE L2 -935 2379 2156 1045 169 13 58 chr6 1959706 1959931 -180455311 - MER20 DNA MER1_type -4 215 1 31 26 0 0 chr6 1962529 1962567 -180452675 + AT_rich Low_complexity Low_complexity 1 38 0 2022 101 24 0 chr6 1963536 1963823 -180451419 - AluSp SINE Alu -16 297 4 2751 16 0 0 chr6 1964061 1964365 -180450877 + AluY SINE Alu 1 304 -7 513 239 54 8 chr6 1965294 1965424 -180449818 + MER20 DNA MER1_type 2 137 -82 192 263 211 0 chr6 1970493 1970645 -180444597 + MIR3 SINE MIR 25 208 0 1211 231 35 19 chr6 1971084 1971456 -180443786 + L1ME1 LINE L1 5782 6159 -7 195 42 0 0 chr6 1972443 1972467 -180442775 + (A)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 1973099 1973140 -180442102 + AT_rich Low_complexity Low_complexity 1 41 0 198 103 0 0 chr6 1974305 1974334 -180440908 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr6 1974705 1974736 -180440506 + AT_rich Low_complexity Low_complexity 1 31 0 205 156 0 0 chr6 1976446 1976478 -180438764 + GA-rich Low_complexity Low_complexity 3 34 0 2256 92 17 0 chr6 1978814 1979109 -180436133 - AluSg SINE Alu -10 300 1 21 57 0 0 chr6 1979684 1979719 -180435523 + AT_rich Low_complexity Low_complexity 1 35 0 189 275 63 106 chr6 1980045 1980187 -180435055 - L2 LINE L2 -1828 1486 1351 261 0 0 0 chr6 1981883 1981912 -180433330 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr6 1982217 1982239 -180433003 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr6 1986142 1986176 -180429066 + (CA)n Simple_repeat Simple_repeat 2 35 0 2014 123 36 0 chr6 1986568 1986870 -180428372 + AluSp SINE Alu 1 313 0 1336 84 0 0 chr6 1986928 1987095 -180428147 + AluSq SINE Alu 129 295 -18 181 263 88 44 chr6 1987389 1987503 -180427739 + MIR SINE MIR 90 208 -54 1979 155 7 7 chr6 1988182 1988492 -180426750 + AluJo SINE Alu 1 310 -2 2550 59 0 7 chr6 1988857 1989163 -180426079 + AluY SINE Alu 2 305 -6 249 309 83 71 chr6 1989746 1989914 -180425328 + L2 LINE L2 3101 3270 -2 25 65 0 0 chr6 1990006 1990052 -180425190 + AT_rich Low_complexity Low_complexity 1 46 0 1447 211 6 35 chr6 1990990 1991303 -180423939 + AluJo SINE Alu 1 304 -8 2067 115 35 0 chr6 1993945 1994232 -180421010 + AluSc SINE Alu 1 297 -12 22 35 0 0 chr6 1994606 1994635 -180420607 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 1994814 1994842 -180420400 + AT_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr6 1997425 1997495 -180417747 + AT_rich Low_complexity Low_complexity 1 70 0 469 223 218 40 chr6 1997764 1997966 -180417276 - MIR SINE MIR -12 250 13 246 306 137 8 chr6 1998003 1998127 -180417115 - MIR SINE MIR -76 186 47 1177 199 15 0 chr6 1998552 1998753 -180416489 + MER2 DNA MER2_type 1 204 -141 1081 158 19 98 chr6 1998753 1999042 -180416200 - AluJo SINE Alu 0 312 54 2144 123 44 27 chr6 1999044 1999411 -180415831 - THE1C LTR MaLR -2 373 1 2628 113 5 15 chr6 1999411 1999800 -180415442 - THE1C-int LTR MaLR 0 1580 1196 300 203 7 48 chr6 1999800 1999873 -180415369 - AluJ/FLAM SINE Alu -244 58 1 21 36 0 0 chr6 1999875 1999903 -180415339 + AT_rich Low_complexity Low_complexity 1 28 0 3655 181 87 28 chr6 2000449 2001511 -180413731 - L1MB7 LINE L1 -3 6181 5044 262 176 0 0 chr6 2001729 2001780 -180413462 - L1MB7 LINE L1 -1118 5028 4978 294 232 14 14 chr6 2001783 2001852 -180413390 - L1MB7 LINE L1 -1250 4896 4828 946 203 16 5 chr6 2002469 2002656 -180412586 + MER5A DNA MER1_type 1 189 0 2064 141 7 0 chr6 2003191 2003482 -180411760 - AluSx SINE Alu -19 293 1 2314 86 26 0 chr6 2004006 2004310 -180410932 - AluSx SINE Alu 0 312 1 21 57 0 0 chr6 2005266 2005301 -180409941 + AT_rich Low_complexity Low_complexity 1 35 0 791 256 20 0 chr6 2006247 2006446 -180408796 - MER3 DNA MER1_type -1 208 6 208 337 71 10 chr6 2006753 2006851 -180408391 - L2 LINE L2 -32 3240 3137 737 207 165 0 chr6 2006955 2007143 -180408099 - MER20 DNA MER1_type 0 219 1 188 279 93 31 chr6 2007744 2007873 -180407369 - L2 LINE L2 -798 2516 2380 1506 150 26 51 chr6 2007949 2008262 -180406980 - MLT1B LTR MaLR -85 305 1 190 243 229 0 chr6 2008302 2008372 -180406870 + MIR SINE MIR 16 101 -161 1037 179 16 0 chr6 2008446 2008636 -180406606 - L1MA4 LINE L1 -101 6199 6007 238 309 0 28 chr6 2008828 2009006 -180406236 + (CCCTA)n Simple_repeat Simple_repeat 2 174 0 229 300 100 0 chr6 2009148 2009218 -180406024 - MIR3 SINE MIR -14 194 118 356 349 50 15 chr6 2009617 2009815 -180405427 - L2 LINE L2 -4 3309 3105 230 241 0 17 chr6 2009912 2009970 -180405272 + CT-rich Low_complexity Low_complexity 1 57 0 344 241 13 0 chr6 2011356 2011435 -180403807 - L1ME3A LINE L1 -4 6166 6087 201 312 128 9 chr6 2011559 2011668 -180403574 + MIR3 SINE MIR 78 199 -9 238 306 97 45 chr6 2012563 2012697 -180402545 - L2 LINE L2 -1 3312 3172 209 280 50 30 chr6 2015865 2015965 -180399277 + MIR SINE MIR 20 121 -141 3038 184 38 6 chr6 2018656 2019189 -180396053 - MER44D DNA MER2_type 0 605 1 238 317 29 39 chr6 2019635 2019739 -180395503 + MIR3 SINE MIR 9 111 -97 871 174 76 76 chr6 2020780 2021055 -180394187 + MER33 DNA MER1_type 49 323 -1 218 329 14 0 chr6 2021369 2021442 -180393800 - MIR3 SINE MIR -54 154 81 2134 121 0 0 chr6 2022908 2023197 -180392045 + AluSx SINE Alu 1 289 -23 2825 16 0 0 chr6 2023924 2024234 -180391008 + AluYa5 SINE Alu 1 310 -1 267 54 0 0 chr6 2024945 2024982 -180390260 + (T)n Simple_repeat Simple_repeat 1 37 0 2249 99 0 34 chr6 2024999 2025321 -180389921 + AluY SINE Alu 1 311 0 192 257 176 0 chr6 2026732 2026806 -180388436 + L3 LINE CR1 1345 1431 -146 309 232 26 13 chr6 2027251 2027406 -180387836 + GA-rich Low_complexity Low_complexity 1 157 0 1737 183 6 10 chr6 2029289 2029601 -180385641 + AluJb SINE Alu 1 311 -1 313 264 104 48 chr6 2029915 2030040 -180385202 - L2 LINE L2 -8 3264 3133 2506 157 179 118 chr6 2033244 2033673 -180381569 + LTR28 LTR ERV1 1 403 -617 2247 118 53 34 chr6 2033673 2034030 -180381212 + THE1B LTR MaLR 1 364 0 2506 157 179 118 chr6 2034030 2034562 -180380680 + LTR28 LTR ERV1 403 1020 0 219 279 118 37 chr6 2034660 2034796 -180380446 + MIR3 SINE MIR 1 147 -61 186 258 106 15 chr6 2035445 2035511 -180379731 + L2 LINE L2 3237 3308 -5 507 93 40 0 chr6 2035717 2035792 -180379450 + AluY SINE Alu 216 293 -18 4504 127 49 39 chr6 2036529 2037306 -180377936 + LTR1 LTR ERV1 1 785 0 23 0 0 0 chr6 2038378 2038401 -180376841 + AT_rich Low_complexity Low_complexity 1 23 0 2255 114 0 0 chr6 2038909 2039208 -180376034 + AluSc SINE Alu 1 299 -10 2082 123 0 0 chr6 2039511 2039831 -180375411 + AluSx SINE Alu 1 320 0 251 313 71 0 chr6 2042673 2042772 -180372470 - L2 LINE L2 0 3313 3208 460 268 65 0 chr6 2043087 2043210 -180372032 - MIR SINE MIR -40 222 92 2537 57 0 3 chr6 2043359 2043659 -180371583 - AluY SINE Alu -9 302 4 4396 205 22 16 chr6 2043688 2045490 -180369752 - L1MB7 LINE L1 -10 6174 4362 266 286 13 13 chr6 2045991 2046068 -180369174 + MIR SINE MIR 62 138 -70 219 241 232 9 chr6 2046162 2046274 -180368968 + MIR SINE MIR 126 262 0 322 250 88 29 chr6 2046624 2046760 -180368482 + L1MEd LINE L1 2 145 -5974 1129 147 121 152 chr6 2047435 2047509 -180367733 + Tigger3(Golem) DNA MER2_type 5 80 -2948 2279 120 0 0 chr6 2047509 2047810 -180367432 + AluSx SINE Alu 1 301 -11 1129 147 121 152 chr6 2047810 2048090 -180367152 + Tigger3(Golem) DNA MER2_type 80 3028 0 1153 216 113 72 chr6 2048242 2048686 -180366556 - MLT1C LTR MaLR 0 467 6 815 120 45 53 chr6 2048715 2048848 -180366394 + FLAM_C SINE Alu 1 132 -1 582 263 108 31 chr6 2049239 2049752 -180365490 - L1MEd LINE L1 -4739 1392 958 390 205 0 0 chr6 2049754 2049837 -180365405 + C-rich Low_complexity Low_complexity 4 86 0 479 305 94 15 chr6 2049880 2050211 -180365031 - L1MEd LINE L1 -5194 925 569 339 278 0 21 chr6 2050310 2050407 -180364835 - L1MC4 LINE L1 -1334 6708 6614 270 81 0 0 chr6 2050407 2050444 -180364798 + (CA)n Simple_repeat Simple_repeat 2 38 0 183 80 0 0 chr6 2051000 2051025 -180364217 + (CATG)n Simple_repeat Simple_repeat 3 27 0 807 214 107 5 chr6 2051650 2051846 -180363396 - MER20 DNA MER1_type 0 219 4 769 279 259 13 chr6 2052020 2052697 -180362545 - L2 LINE L2 -1020 2294 1452 345 279 39 90 chr6 2053451 2053684 -180361558 + MLT1K LTR MaLR 360 580 -8 349 330 35 9 chr6 2054207 2054322 -180360920 + L2 LINE L2 3181 3298 -15 2209 80 3 0 chr6 2055049 2055335 -180359907 + AluY SINE Alu 1 287 -24 1457 52 0 0 chr6 2055346 2055519 -180359723 + AluYa8 SINE Alu 133 305 -5 632 236 0 8 chr6 2056453 2056580 -180358662 + FLAM_A SINE Alu 1 126 -7 462 289 168 10 chr6 2057121 2057318 -180357924 + MIR SINE MIR 25 252 -10 542 289 54 0 chr6 2058858 2059024 -180356218 - MIR SINE MIR -45 217 43 870 151 11 81 chr6 2059314 2059500 -180355742 + AluJo SINE Alu 120 292 -20 294 260 60 30 chr6 2060070 2060170 -180355072 - MIR SINE MIR -91 171 69 798 202 19 84 chr6 2061707 2061920 -180353322 - MER20 DNA MER1_type -19 200 2 846 152 15 8 chr6 2062387 2062519 -180352723 - AluJb SINE Alu -178 134 2 249 278 55 35 chr6 2062876 2063006 -180352236 + MIR SINE MIR 54 187 -21 22 0 0 0 chr6 2064639 2064661 -180350581 + AT_rich Low_complexity Low_complexity 1 22 0 3428 155 37 12 chr6 2065015 2065607 -180349635 - Tigger1 DNA MER2_type -128 2290 1684 2177 161 45 15 chr6 2065603 2066000 -180349242 - Tigger1 DNA MER2_type -1980 438 30 * 405 178 89 141 chr6 2066015 2066150 -180349092 - MER7A DNA MER2_type -220 126 1 180 111 0 0 chr6 2066592 2066619 -180348623 + (A)n Simple_repeat Simple_repeat 1 27 0 753 236 144 5 chr6 2067020 2067215 -180348027 - MER58A DNA MER1_type -2 222 1 2149 95 35 3 chr6 2067642 2067927 -180347315 - AluSx SINE Alu -18 294 1 380 271 119 0 chr6 2068071 2068189 -180347053 - L2 LINE L2 0 3272 3141 1694 184 0 14 chr6 2068636 2068930 -180346312 - AluJo SINE Alu -22 290 1 23 33 0 0 chr6 2068930 2068960 -180346282 + AT_rich Low_complexity Low_complexity 1 30 0 1142 183 69 19 chr6 2069913 2070175 -180345067 + L1MA5A LINE L1 6002 6276 -21 195 299 10 72 chr6 2072099 2072196 -180343046 - MER5A DNA MER1_type -63 126 36 * 239 231 44 66 chr6 2072124 2072215 -180343027 + MER5A DNA MER1_type 96 184 -5 1990 169 58 64 chr6 2072883 2073689 -180341553 - L1MB7 LINE L1 -1 6183 5373 2411 110 0 0 chr6 2073689 2073999 -180341243 - AluSg SINE Alu 0 310 1 1091 147 24 18 chr6 2074006 2074176 -180341066 - FAM SINE Alu -4 171 1 1990 169 58 64 chr6 2074176 2074491 -180340751 - L1MB7 LINE L1 -817 5367 4868 182 266 78 16 chr6 2074744 2074808 -180340434 - MIR SINE MIR -83 125 58 208 233 67 100 chr6 2075181 2075271 -180339971 - MIR SINE MIR -3 259 173 4819 36 21 5 chr6 2075512 2076071 -180339171 - L1PA4 LINE L1 -6 6149 5582 1551 180 7 34 chr6 2076365 2076659 -180338583 + AluJo SINE Alu 1 286 -26 840 246 24 28 chr6 2076766 2076977 -180338265 + MER58A DNA MER1_type 13 222 -2 221 360 56 0 chr6 2077682 2077771 -180337471 + L2 LINE L2 2543 2636 -678 367 260 309 18 chr6 2077790 2078179 -180337063 + L2 LINE L2 2811 3312 -1 247 273 45 0 chr6 2079654 2079720 -180335522 + L2 LINE L2 3142 3210 -62 2600 64 0 3 chr6 2079804 2080115 -180335127 + AluY SINE Alu 1 310 -1 26 0 0 0 chr6 2080144 2080170 -180335072 + AT_rich Low_complexity Low_complexity 1 26 0 400 257 64 9 chr6 2080680 2080789 -180334453 + L2 LINE L2 3197 3311 -2 1339 123 30 5 chr6 2081590 2081793 -180333449 + L1PA10 LINE L1 5954 6161 -7 41 66 0 0 chr6 2082991 2083067 -180332175 + AT_rich Low_complexity Low_complexity 1 76 0 24 53 0 0 chr6 2083087 2083125 -180332117 + AT_rich Low_complexity Low_complexity 1 38 0 808 286 18 21 chr6 2083375 2083655 -180331587 + Charlie4 DNA MER1_type 18 296 -1665 597 222 58 18 chr6 2083656 2083827 -180331415 + Charlie4 DNA MER1_type 1784 1961 0 22 0 0 0 chr6 2084471 2084493 -180330749 + AT_rich Low_complexity Low_complexity 1 22 0 2302 97 0 23 chr6 2085573 2085882 -180329360 + AluSx SINE Alu 1 302 -10 449 174 87 0 chr6 2087178 2087270 -180327972 + L2 LINE L2 3173 3272 0 20624 185 34 15 chr6 2088305 2092848 -180322394 + L1PB4 LINE L1 18 5493 -2119 1755 105 0 4 chr6 2092848 2093077 -180322165 + AluSq SINE Alu 1 228 -85 20624 185 34 15 chr6 2093077 2094653 -180320589 + L1PB4 LINE L1 5493 7037 -575 604 242 47 38 chr6 2094783 2094994 -180320248 + AluJo SINE Alu 81 293 -19 1479 220 24 3 chr6 2094999 2095331 -180319911 + L1PB4 LINE L1 7250 7588 -6 303 318 104 20 chr6 2095350 2095551 -180319691 + L1M4 LINE L1 2115 2332 -3814 345 328 91 70 chr6 2095564 2095906 -180319336 + L1MCa LINE L1 42 390 -6036 360 243 72 27 chr6 2096064 2096175 -180319067 + L2 LINE L2 3197 3312 -1 839 181 40 6 chr6 2096980 2097157 -180318085 + L1PA11 LINE L1 5956 6138 -36 472 311 63 70 chr6 2097396 2097869 -180317373 + L2 LINE L2 2844 3313 0 25 31 0 0 chr6 2098460 2098492 -180316750 + AT_rich Low_complexity Low_complexity 1 32 0 252 333 52 7 chr6 2099174 2099309 -180315933 - HAL1 LINE L1 -822 1685 1545 253 336 45 9 chr6 2100277 2100387 -180314855 + L2 LINE L2 3150 3263 -9 293 350 60 0 chr6 2101356 2101456 -180313786 - L2 LINE L2 -9 3263 3158 2414 121 6 6 chr6 2102528 2102892 -180312350 + L1PA11 LINE L1 5803 6166 -8 202 351 69 8 chr6 2103110 2103241 -180312001 + L2 LINE L2 2617 2755 -559 2448 71 0 3 chr6 2104269 2104566 -180310676 - AluY SINE Alu -13 298 3 942 192 75 43 chr6 2104569 2104850 -180310392 - L1MB8 LINE L1 -72 6106 5817 1013 175 0 29 chr6 2104888 2105059 -180310183 - FRAM SINE Alu -10 166 1 2425 182 34 12 chr6 2105059 2105722 -180309520 - L1MB8 LINE L1 -351 5827 5152 1269 227 60 5 chr6 2105760 2106144 -180309098 + L1M4 LINE L1 4611 5015 -1131 345 226 38 9 chr6 2106147 2106253 -180308989 - HAL1b LINE L1 -616 732 624 377 286 259 5 chr6 2106433 2106618 -180308624 - L2 LINE L2 0 3313 3082 313 211 79 72 chr6 2106627 2106779 -180308463 + HAL1b LINE L1 905 1057 -291 294 269 44 55 chr6 2107780 2107962 -180307280 + MLT1J LTR MaLR 253 432 -79 216 240 56 112 chr6 2108164 2108343 -180306899 + L2 LINE L2 2894 3062 -210 2187 130 0 0 chr6 2108579 2108896 -180306346 - AluSx SINE Alu 0 317 1 237 227 175 10 chr6 2109666 2109763 -180305479 + MER103 DNA DNA 37 149 -17 219 69 0 0 chr6 2110803 2110832 -180304410 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 728 247 97 23 chr6 2113205 2113464 -180301778 - L2 LINE L2 -1 3312 3035 689 282 19 34 chr6 2113534 2113740 -180301502 - MIR SINE MIR -13 249 47 22 70 0 0 chr6 2114471 2114514 -180300728 + AT_rich Low_complexity Low_complexity 1 43 0 382 161 39 23 chr6 2116244 2116374 -180298868 + CT-rich Low_complexity Low_complexity 3 134 0 1083 304 83 15 chr6 2116620 2117091 -180298151 - MLT1J LTR MaLR -8 503 1 2332 93 0 3 chr6 2117418 2117718 -180297524 + AluSc SINE Alu 1 299 -10 254 182 55 0 chr6 2118575 2118630 -180296612 + GA-rich Low_complexity Low_complexity 4 61 0 318 313 57 62 chr6 2118630 2118718 -180296524 + HAL1b LINE L1 430 517 -831 1270 216 81 6 chr6 2118718 2119038 -180296204 - MER2 DNA MER2_type 0 344 1 318 313 57 62 chr6 2119038 2119176 -180296066 + HAL1b LINE L1 517 655 -693 2351 87 3 0 chr6 2119232 2119531 -180295711 + AluSg SINE Alu 1 300 -10 229 211 0 0 chr6 2119998 2120055 -180295187 - HAL1b LINE L1 -571 777 721 463 36 99 0 chr6 2120086 2120197 -180295045 + (TA)n Simple_repeat Simple_repeat 2 123 0 6174 148 65 25 chr6 2120689 2121872 -180293370 - Tigger3b DNA MER2_type 0 1231 1 381 247 9 57 chr6 2122395 2122580 -180292662 + MER34 LTR ERV1 1 201 -341 * 701 215 45 33 chr6 2122579 2122821 -180292421 + MER39 LTR ERV1 463 707 0 201 313 0 0 chr6 2122895 2122962 -180292280 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 488 202 47 0 chr6 2125304 2125433 -180289809 + Charlie5 DNA MER1_type 2489 2623 0 5600 110 16 14 chr6 2125476 2126477 -180288765 + L1PA13 LINE L1 5160 6160 -3 25 0 0 0 chr6 2126866 2126891 -180288351 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr6 2127060 2127097 -180288145 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr6 2127521 2127550 -180287692 + AT_rich Low_complexity Low_complexity 1 29 0 1819 159 7 13 chr6 2127680 2127981 -180287261 + AluJo SINE Alu 1 299 -13 1279 223 84 12 chr6 2128210 2128784 -180286458 + L1M4 LINE L1 2613 3227 -2919 2153 133 0 0 chr6 2128949 2129257 -180285985 - AluSx SINE Alu -4 308 1 1037 183 68 8 chr6 2129259 2129494 -180285748 - Tigger2 DNA MER2_type 0 2718 2470 29 28 0 0 chr6 2129620 2129656 -180285586 + AT_rich Low_complexity Low_complexity 1 36 0 3544 192 33 18 chr6 2129970 2130758 -180284484 - L1MB8 LINE L1 -10 6168 5369 2188 238 27 28 chr6 2130738 2131123 -180284119 - L1MB8 LINE L1 -1780 4366 3981 * 1922 113 73 0 chr6 2131123 2131397 -180283845 - AluSx SINE Alu -18 294 1 2188 238 27 28 chr6 2131397 2131721 -180283521 - L1MB8 LINE L1 -2165 3981 3658 187 51 0 51 chr6 2131953 2131992 -180283250 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 21 36 0 0 chr6 2133213 2133241 -180282001 + AT_rich Low_complexity Low_complexity 1 28 0 292 311 50 42 chr6 2135400 2135638 -180279604 + L1MEc LINE L1 1093 1332 -4873 314 275 79 44 chr6 2135762 2135971 -180279271 + L1MEc LINE L1 1546 1761 -815 450 0 0 0 chr6 2137007 2137057 -180278185 + (TG)n Simple_repeat Simple_repeat 2 51 0 211 200 0 0 chr6 2137135 2137170 -180278072 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr6 2138565 2138589 -180276653 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr6 2139783 2139810 -180275432 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr6 2140639 2140666 -180274576 + AT_rich Low_complexity Low_complexity 1 27 0 263 243 171 0 chr6 2141808 2141878 -180273364 - MER102a DNA MER1_type -3 327 246 332 193 263 18 chr6 2141882 2141996 -180273246 - MER5A DNA MER1_type 0 189 48 832 264 63 70 chr6 2142107 2142580 -180272662 - L2 LINE L2 0 3313 2844 398 277 43 28 chr6 2143340 2143481 -180271761 - L2 LINE L2 0 3313 3171 422 320 19 13 chr6 2144523 2144679 -180270563 - MER5A DNA MER1_type -1 188 32 228 252 56 9 chr6 2144786 2144893 -180270349 + Charlie7 DNA MER1_type 2435 2546 -66 479 239 62 0 chr6 2144960 2145090 -180270152 - MER58C DNA MER1_type 0 215 78 600 146 21 0 chr6 2145100 2145196 -180270046 + L1MB7 LINE L1 5894 5991 -193 296 314 176 29 chr6 2146829 2147141 -180268101 + L2 LINE L2 1963 2320 -994 1464 202 7 20 chr6 2147185 2147487 -180267755 + AluJo SINE Alu 1 298 -14 206 245 0 0 chr6 2148571 2148624 -180266618 + T-rich Low_complexity Low_complexity 1 53 0 283 128 0 0 chr6 2148627 2148674 -180266568 - L1PA16 LINE L1 0 6166 6120 255 314 67 0 chr6 2150030 2150135 -180265107 - MIR SINE MIR -30 232 121 186 351 13 26 chr6 2150334 2150411 -180264831 + MER5A DNA MER1_type 45 120 -69 1331 265 122 40 chr6 2150905 2151088 -180264154 + L1MDa LINE L1 1475 1641 -5080 2347 103 0 0 chr6 2151088 2151398 -180263844 + AluSg SINE Alu 1 310 0 1331 265 122 40 chr6 2151398 2152153 -180263089 + L1MDa LINE L1 1641 2536 -4185 * 4855 141 26 22 chr6 2152137 2152673 -180262569 + L1PB4 LINE L1 5291 5833 -323 1318 206 29 32 chr6 2152673 2152984 -180262258 + AluJo SINE Alu 1 310 -2 4855 141 26 22 chr6 2152984 2153308 -180261934 + L1PB4 LINE L1 5833 6154 -2 409 257 104 15 chr6 2153323 2153525 -180261717 + L1MDa LINE L1 2509 2728 -3812 * 3240 238 151 69 chr6 2153520 2154967 -180260275 + L1MCa LINE L1 26 1352 -5074 318 50 0 0 chr6 2154967 2155007 -180260235 + (TA)n Simple_repeat Simple_repeat 2 41 0 3240 238 151 69 chr6 2155007 2156678 -180258564 + L1MCa LINE L1 1352 3409 -3017 1378 180 117 25 chr6 2156679 2156996 -180258246 - MER44D DNA MER2_type -1 604 387 1607 161 16 82 chr6 2156996 2157313 -180257929 + AluJb SINE Alu 1 296 -16 392 303 0 0 chr6 2157371 2157516 -180257726 + L1MDa LINE L1 2757 2901 -3639 1458 184 4 11 chr6 2157617 2157888 -180257354 - AluJb SINE Alu -23 289 21 2163 115 0 7 chr6 2158631 2158936 -180256306 - AluSq SINE Alu -10 303 1 23 68 0 0 chr6 2158956 2159000 -180256242 + AT_rich Low_complexity Low_complexity 1 44 0 787 252 96 32 chr6 2159522 2160022 -180255220 - L1M4 LINE L1 -1331 4815 4284 1159 175 154 34 chr6 2160026 2160351 -180254891 + MLT1A2 LTR MaLR 7 370 -4 289 265 82 20 chr6 2160356 2160552 -180254690 - L1M4 LINE L1 -1862 4284 4077 1144 195 8 51 chr6 2160616 2160873 -180254369 + MLT1D LTR MaLR 2 247 -258 8396 69 3 2 chr6 2160874 2162019 -180253223 + L1P LINE L1 2837 3982 -2164 1837 79 12 8 chr6 2162019 2162270 -180252972 + L1PA6 LINE L1 5902 6154 0 876 190 109 19 chr6 2162281 2162492 -180252750 + MLT1D LTR MaLR 269 498 -7 745 287 54 9 chr6 2162530 2162847 -180252395 - L1M4 LINE L1 -2229 3917 3587 552 229 70 78 chr6 2162923 2162984 -180252258 - L1M4 LINE L1 -3525 2621 2561 2466 81 0 0 chr6 2162984 2163291 -180251951 + AluSg SINE Alu 1 307 -3 552 229 70 78 chr6 2163291 2163513 -180251729 - L1M4 LINE L1 -3585 2561 2340 186 408 26 26 chr6 2163514 2163666 -180251576 - L2 LINE L2 -225 3047 2896 238 303 56 42 chr6 2163723 2163865 -180251377 + MLT1L LTR MaLR 44 187 -428 342 330 135 14 chr6 2163933 2164148 -180251094 + MLT1L LTR MaLR 353 593 -22 1196 215 111 82 chr6 2165424 2165945 -180249297 + L1ME LINE L1 929 1464 -5483 181 0 33 33 chr6 2165946 2165976 -180249266 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 811 230 86 63 chr6 2165980 2166572 -180248670 + L1ME LINE L1 1413 2141 -4816 195 247 193 30 chr6 2166885 2167054 -180248188 + MIR SINE MIR 2 246 -16 369 263 10 0 chr6 2167165 2167264 -180247978 - MER104 DNA Tc2 -12 168 69 641 263 43 16 chr6 2167332 2167518 -180247724 - MIR SINE MIR -59 203 13 432 343 6 23 chr6 2167710 2167885 -180247357 + MER5B DNA MER1_type 4 175 -3 25 0 0 0 chr6 2168043 2168068 -180247174 + AT_rich Low_complexity Low_complexity 1 25 0 245 309 119 40 chr6 2168373 2168499 -180246743 + L2 LINE L2 3136 3271 -1 691 260 73 0 chr6 2168915 2169107 -180246135 + MER3 DNA MER1_type 4 209 0 1871 126 72 0 chr6 2169224 2169502 -180245740 + AluSx SINE Alu 1 298 -14 264 337 0 20 chr6 2169635 2169736 -180245506 + L3 LINE CR1 1362 1460 -117 2138 125 13 0 chr6 2170048 2170353 -180244889 + AluSx SINE Alu 4 312 0 2783 10 0 0 chr6 2170574 2170875 -180244367 + AluY SINE Alu 1 301 -10 569 295 105 45 chr6 2171594 2171895 -180243347 - L2 LINE L2 -1 3312 2970 2121 93 45 0 chr6 2171895 2172184 -180243058 + AluSc SINE Alu 1 302 -7 569 295 105 45 chr6 2172184 2172374 -180242868 - L2 LINE L2 -343 2970 2793 2100 139 0 7 chr6 2172582 2172891 -180242351 + AluSx SINE Alu 1 307 -5 329 301 107 11 chr6 2173925 2174100 -180241142 + MIR SINE MIR 21 214 -48 293 354 0 0 chr6 2174226 2174325 -180240917 + L2 LINE L2 3210 3308 -5 365 296 176 0 chr6 2175960 2176102 -180239140 - MIR SINE MIR -12 250 84 37606 34 25 2 chr6 2176115 2181579 -180233663 + L1PA3 LINE L1 564 6155 0 245 167 0 17 chr6 2181580 2181640 -180233602 - Charlie4 DNA MER1_type -133 1828 1770 245 259 45 80 chr6 2182965 2183077 -180232165 + MIR SINE MIR 41 148 -114 274 211 28 0 chr6 2183206 2183277 -180231965 + (TG)n Simple_repeat Simple_repeat 1 73 0 5943 151 27 78 chr6 2184516 2185816 -180229426 - L1MA4A LINE L1 -7 6296 5007 748 207 7 0 chr6 2185816 2185951 -180229291 - AluJo SINE Alu -176 136 1 5943 151 27 78 chr6 2185951 2186403 -180228839 - L1MA4A LINE L1 -1296 5007 4533 10349 202 41 25 chr6 2186423 2191936 -180223306 - L1PA4 LINE L1 -4 6853 1270 270 200 12 62 chr6 2192032 2192112 -180223130 + MER116 DNA Mariner 1 76 -4 220 209 0 0 chr6 2193311 2193354 -180221888 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 234 124 16 chr6 2193771 2193963 -180221279 - MER112 DNA MER1_type 0 260 21 24 32 0 0 chr6 2195085 2195116 -180220126 + AT_rich Low_complexity Low_complexity 1 31 0 2549 50 0 3 chr6 2195654 2195954 -180219288 - AluY SINE Alu -12 299 1 1918 143 11 0 chr6 2196687 2196974 -180218268 - AluJo SINE Alu -22 290 1 219 241 103 46 chr6 2197033 2197120 -180218122 + MIR SINE MIR 57 148 -114 238 253 0 81 chr6 2199484 2199571 -180215671 + MIR SINE MIR 128 207 -55 234 294 43 33 chr6 2200123 2200215 -180215027 - L2 LINE L2 0 3313 3221 263 242 10 30 chr6 2200627 2200726 -180214516 + GA-rich Low_complexity Low_complexity 1 97 0 372 366 72 19 chr6 2200727 2200989 -180214253 - L1MEd LINE L1 -5382 737 462 467 353 30 15 chr6 2202586 2202787 -180212455 + L3 LINE CR1 946 1149 -428 1136 173 133 41 chr6 2202791 2203062 -180212180 + AluJb SINE Alu 6 301 -11 716 327 110 36 chr6 2205141 2205640 -180209602 + L3 LINE CR1 457 992 -585 441 330 121 35 chr6 2205679 2206052 -180209190 + L3 LINE CR1 1167 1571 -6 722 255 210 13 chr6 2206244 2206558 -180208684 + HsTC2 DNA Tc2 24 399 -1499 * 783 227 48 13 chr6 2206555 2206784 -180208458 + HsTC2 DNA Tc2 1659 1895 -3 273 348 11 11 chr6 2206856 2206948 -180208294 - L3 LINE CR1 -4 1573 1482 304 255 131 48 chr6 2207152 2207297 -180207945 + L1M LINE L1 5257 5413 -2395 23 24 0 24 chr6 2209198 2209216 -180206026 + AT_rich Low_complexity Low_complexity 1 18 -22 2034 100 14 14 chr6 2209216 2209505 -180205737 - AluSx SINE Alu -23 289 1 23 24 0 24 chr6 2209505 2209527 -180205715 + AT_rich Low_complexity Low_complexity 18 40 0 324 206 0 184 chr6 2211109 2211245 -180203997 - MIR3 SINE MIR -9 199 89 189 154 0 0 chr6 2212454 2212493 -180202749 + A-rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 2214924 2214945 -180200297 + AT_rich Low_complexity Low_complexity 1 21 0 2543 62 0 0 chr6 2216050 2216356 -180198886 + AluY SINE Alu 3 308 -3 2279 111 0 0 chr6 2217728 2218034 -180197208 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr6 2219513 2219543 -180195699 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 2219610 2219635 -180195607 + AT_rich Low_complexity Low_complexity 1 25 0 348 314 109 6 chr6 2220448 2220604 -180194638 - L2 LINE L2 -229 3084 2913 238 342 9 45 chr6 2220641 2220752 -180194490 - MIR SINE MIR -129 133 27 484 268 31 0 chr6 2223579 2223706 -180191536 + MER5A DNA MER1_type 1 131 -58 204 255 0 0 chr6 2224944 2224991 -180190251 + L2 LINE L2 3267 3313 0 246 32 0 0 chr6 2226096 2226127 -180189115 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 279 302 43 43 chr6 2227880 2228019 -180187223 + MIR3 SINE MIR 1 139 -69 25 0 0 0 chr6 2228212 2228237 -180187005 + AT_rich Low_complexity Low_complexity 1 25 0 425 268 167 26 chr6 2231260 2231457 -180183785 - MIR SINE MIR -3 259 32 672 256 21 10 chr6 2232118 2232327 -180182915 - MIR SINE MIR -41 221 12 316 274 260 7 chr6 2233372 2233518 -180181724 + MER5A DNA MER1_type 3 185 -4 238 290 81 16 chr6 2236145 2236207 -180179035 + MIR SINE MIR 23 88 -174 611 229 0 0 chr6 2236303 2236412 -180178830 + FLAM_C SINE Alu 1 109 -34 261 0 0 0 chr6 2236423 2236452 -180178790 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 730 161 8 0 chr6 2236457 2236575 -180178667 - FLAM_C SINE Alu -24 119 1 992 194 0 0 chr6 2236587 2236762 -180178480 + AluJb SINE Alu 129 303 -9 22 0 0 0 chr6 2237166 2237188 -180178054 + AT_rich Low_complexity Low_complexity 1 22 0 1933 140 10 0 chr6 2237777 2238077 -180177165 - AluSx SINE Alu -7 305 3 2154 119 3 3 chr6 2239318 2239612 -180175630 - AluSq SINE Alu -9 304 11 306 275 38 0 chr6 2239667 2239747 -180175495 - MIR SINE MIR -134 128 46 453 231 25 100 chr6 2241056 2241216 -180174026 - MIR3 SINE MIR -31 177 30 421 200 0 0 chr6 2242595 2242670 -180172572 + Tigger5 DNA MER2_type 5 79 -2244 287 194 83 28 chr6 2242672 2242744 -180172498 - Tigger5 DNA MER2_type -6 2317 2242 * 339 217 0 0 chr6 2242740 2242809 -180172433 + Tigger5 DNA MER2_type 2255 2323 0 624 249 82 27 chr6 2243117 2243326 -180171916 - MIR SINE MIR -4 258 42 454 283 108 28 chr6 2246023 2246235 -180169007 - MIR SINE MIR 0 262 34 26 30 0 0 chr6 2246312 2246345 -180168897 + AT_rich Low_complexity Low_complexity 1 33 0 297 0 0 0 chr6 2246743 2246776 -180168466 + (CAT)n Simple_repeat Simple_repeat 1 33 0 1944 152 61 7 chr6 2246833 2247035 -180168207 - Charlie5 DNA MER1_type 0 2624 2434 1460 164 126 7 chr6 2247035 2247345 -180167897 - MER7A DNA MER2_type 0 346 2 1944 152 61 7 chr6 2247345 2247582 -180167660 - Charlie5 DNA MER1_type -190 2434 2161 1310 169 60 70 chr6 2247582 2247884 -180167358 + AluJo SINE Alu 1 299 -13 1058 208 0 0 chr6 2247897 2248080 -180167162 + FRAM SINE Alu 1 176 0 3190 200 79 39 chr6 2248080 2248481 -180166761 - Charlie5 DNA MER1_type -454 2170 1787 2402 73 7 3 chr6 2248481 2248781 -180166461 - AluSp SINE Alu -12 301 1 3190 200 79 39 chr6 2248781 2249650 -180165592 - Charlie5 DNA MER1_type -837 1787 823 719 139 9 0 chr6 2249650 2249765 -180165477 + MSTB LTR MaLR 1 116 -310 559 174 74 0 chr6 2249753 2249874 -180165368 + MSTB LTR MaLR 299 428 -4 * 1160 217 170 28 chr6 2249878 2250211 -180165031 - Charlie5 DNA MER1_type -1797 827 543 904 158 0 0 chr6 2250211 2250357 -180164885 + L1PB3 LINE L1 6008 6153 -1 1160 217 170 28 chr6 2250357 2250666 -180164576 - Charlie5 DNA MER1_type -2081 543 15 735 275 54 0 chr6 2250675 2250897 -180164345 - MIR SINE MIR -27 235 2 1092 223 157 55 chr6 2251181 2251639 -180163603 + MLT1D LTR MaLR 1 505 0 254 29 29 0 chr6 2253013 2253048 -180162194 + (TC)n Simple_repeat Simple_repeat 2 37 0 2501 155 23 32 chr6 2253395 2253866 -180161376 + MLT1C LTR MaLR 1 467 0 217 271 51 0 chr6 2254187 2254246 -180160996 + L2 LINE L2 3138 3199 -73 198 0 0 0 chr6 2255049 2255071 -180160171 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 315 283 126 25 chr6 2255213 2255372 -180159870 - MIR SINE MIR -37 225 51 1298 217 68 25 chr6 2255467 2255910 -180159332 - MER74B LTR ERVL -103 519 58 2135 108 0 11 chr6 2256400 2256717 -180158525 + AluSx SINE Alu 1 314 0 478 154 235 0 chr6 2256753 2256915 -180158327 - MER2 DNA MER2_type -26 319 120 498 180 30 0 chr6 2256915 2257015 -180158227 + FLAM_A SINE Alu 22 124 -18 542 184 149 0 chr6 2257015 2257129 -180158113 - MER2 DNA MER2_type -213 132 2 613 302 16 21 chr6 2257144 2257386 -180157856 + L1ME LINE L1 5336 5576 -586 213 310 0 0 chr6 2257666 2257724 -180157518 + MIR3 SINE MIR 149 206 -2 2202 115 3 0 chr6 2259555 2259867 -180155375 - AluSq SINE Alu 0 313 1 216 315 76 11 chr6 2260139 2260231 -180155011 - MIR3 SINE MIR -8 200 103 638 191 30 30 chr6 2261415 2261546 -180153696 + FLAM_C SINE Alu 1 131 -2 407 283 25 57 chr6 2261632 2261791 -180153451 + MIR3 SINE MIR 34 187 -21 21 57 0 19 chr6 2262196 2262213 -180153029 + AT_rich Low_complexity Low_complexity 1 17 -35 1534 91 55 0 chr6 2262213 2262467 -180152775 + L1MA2 LINE L1 6037 6304 0 21 57 0 19 chr6 2262467 2262502 -180152740 + AT_rich Low_complexity Low_complexity 17 52 0 192 283 0 19 chr6 2262611 2262664 -180152578 + MIR SINE MIR 69 120 -142 327 293 87 62 chr6 2263527 2263848 -180151394 + L1ME LINE L1 4259 4587 -1559 893 131 138 0 chr6 2264076 2264236 -180151006 + AluSq SINE Alu 132 313 0 567 299 83 56 chr6 2264252 2264878 -180150364 + L1ME LINE L1 4894 5547 -751 245 228 25 13 chr6 2264895 2264974 -180150268 + L1ME LINE L1 5612 5691 -430 22 35 0 0 chr6 2265301 2265330 -180149912 + AT_rich Low_complexity Low_complexity 1 29 0 225 65 0 0 chr6 2266011 2266042 -180149200 + (A)n Simple_repeat Simple_repeat 1 31 0 323 265 212 13 chr6 2268293 2268444 -180146798 - MER5A DNA MER1_type 0 189 9 471 180 18 81 chr6 2270343 2270454 -180144788 - Tigger2 DNA MER2_type -1 2717 2614 507 154 0 0 chr6 2270454 2270532 -180144710 - AluJ/FLAM SINE Alu -234 78 1 1259 81 113 57 chr6 2270532 2270654 -180144588 - Tigger2 DNA MER2_type -2456 262 148 2329 113 7 0 chr6 2270654 2270964 -180144278 - AluSx SINE Alu 0 312 1 1259 81 113 57 chr6 2270964 2271089 -180144153 - Tigger2 DNA MER2_type -2570 148 1 227 293 47 28 chr6 2271452 2271558 -180143684 - MIR SINE MIR -33 229 122 1423 151 98 19 chr6 2271712 2271977 -180143265 - AluJb SINE Alu -26 286 1 2238 97 7 0 chr6 2272166 2272456 -180142786 - AluY SINE Alu -19 292 1 188 265 191 0 chr6 2273348 2273416 -180141826 + MIR3 SINE MIR 15 95 -113 459 0 0 0 chr6 2273807 2273858 -180141384 + (CA)n Simple_repeat Simple_repeat 2 52 0 784 233 150 53 chr6 2274514 2274555 -180140687 - MLT2B1 LTR ERVL 0 520 484 216 67 0 0 chr6 2274555 2274585 -180140657 + (TG)n Simple_repeat Simple_repeat 1 30 0 784 233 150 53 chr6 2274585 2274882 -180140360 - MLT2B1 LTR ERVL -36 484 149 3846 201 55 7 chr6 2274911 2276336 -180138906 - ERVL-B1 LTR ERVL -4219 1545 2 1122 215 195 31 chr6 2276337 2276784 -180138458 - MLT2B1 LTR ERVL 0 520 1 452 320 47 65 chr6 2277019 2277360 -180137882 + L1MEd LINE L1 923 1257 -4862 243 230 144 58 chr6 2277521 2277660 -180137582 - MIR SINE MIR -26 236 86 244 293 29 71 chr6 2277703 2277843 -180137399 - MIR SINE MIR -69 193 60 194 304 54 22 chr6 2277879 2277971 -180137271 + MIR3 SINE MIR 95 189 -19 272 313 0 10 chr6 2278249 2278345 -180136897 + L2 LINE L2 1890 1984 -1330 193 287 111 80 chr6 2278370 2278784 -180136458 + L2 LINE L2 2430 2856 -458 205 346 0 39 chr6 2279015 2279093 -180136149 + L2 LINE L2 3238 3312 -1 1937 115 0 48 chr6 2280482 2280794 -180134448 + AluSx SINE Alu 11 307 -5 2376 96 3 0 chr6 2281069 2281381 -180133861 + AluSp SINE Alu 1 313 0 1919 180 0 3 chr6 2281491 2281796 -180133446 + AluJo SINE Alu 1 304 -8 2460 71 0 0 chr6 2281861 2282158 -180133084 + AluY SINE Alu 1 297 -14 434 186 72 0 chr6 2282471 2282568 -180132674 - MLT1A2 LTR MaLR -2 372 269 2298 79 0 7 chr6 2283558 2283850 -180131392 + AluSg1 SINE Alu 1 290 -19 351 264 138 75 chr6 2284041 2284389 -180130853 + L1MEd LINE L1 2659 3028 -3101 225 283 120 0 chr6 2285059 2285151 -180130091 - MIR SINE MIR -110 152 50 327 250 0 14 chr6 2285259 2285331 -180129911 - L2 LINE L2 -2 3311 3241 266 0 29 0 chr6 2285692 2285726 -180129516 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2065 126 0 3 chr6 2285731 2286016 -180129226 - AluSx SINE Alu -28 284 1 269 183 95 103 chr6 2286933 2287059 -180128183 - MIR SINE MIR -4 258 134 233 128 43 0 chr6 2287059 2287106 -180128136 - MIR SINE MIR -98 164 116 22 0 0 0 chr6 2287348 2287370 -180127872 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 2287410 2287442 -180127800 + AT_rich Low_complexity Low_complexity 1 32 0 2253 206 7 0 chr6 2288502 2288938 -180126304 + L1PA16 LINE L1 3648 4086 -2060 3331 152 6 11 chr6 2288939 2289331 -180125911 + L1PA16 LINE L1 5649 6039 -127 2745 130 25 35 chr6 2289331 2289763 -180125479 - MSTA LTR MaLR 0 428 1 3331 152 6 11 chr6 2289763 2289890 -180125352 + L1PA16 LINE L1 6039 6165 -1 1387 209 49 57 chr6 2290498 2290866 -180124376 + MLT1A1 LTR MaLR 1 365 0 30 0 0 0 chr6 2291779 2291809 -180123433 + AT_rich Low_complexity Low_complexity 1 30 0 187 196 206 52 chr6 2291900 2291997 -180123245 - L3 LINE CR1 -884 693 582 2301 84 0 26 chr6 2292033 2292343 -180122899 + AluY SINE Alu 1 302 -9 1081 276 157 28 chr6 2292419 2292587 -180122655 + L2 LINE L2 2353 2498 -815 13768 136 50 45 chr6 2292587 2293868 -180121374 + Tigger1 DNA MER2_type 1 1300 -1118 1805 161 0 7 chr6 2293868 2294153 -180121089 - AluJb SINE Alu -27 285 3 13768 136 50 45 chr6 2294153 2295278 -180119964 + Tigger1 DNA MER2_type 1300 2418 0 1081 276 157 28 chr6 2295278 2295728 -180119514 + L2 LINE L2 2498 3056 -257 590 175 165 10 chr6 2295761 2295955 -180119287 - MER5C DNA MER1_type 0 324 101 468 226 0 21 chr6 2296106 2296199 -180119043 - L2 LINE L2 -38 3275 3185 283 178 89 0 chr6 2297033 2297108 -180118134 - MIR SINE MIR -65 197 115 23 68 0 0 chr6 2297128 2297172 -180118070 + AT_rich Low_complexity Low_complexity 1 44 0 284 346 19 56 chr6 2298680 2298878 -180116364 - MIR SINE MIR -51 211 19 298 281 133 31 chr6 2300588 2300716 -180114526 - MER5A DNA MER1_type -2 187 36 422 313 48 12 chr6 2301528 2301694 -180113548 - MIR SINE MIR -70 192 21 6332 187 84 71 chr6 2302523 2304107 -180111135 + MER52A LTR ERV1 46 1755 0 1462 285 114 9 chr6 2304178 2304809 -180110433 + MER20B DNA MER1_type 30 726 -57 2468 63 10 0 chr6 2304868 2305168 -180110074 - AluY SINE Alu -8 303 1 742 199 0 22 chr6 2306847 2306983 -180108259 + FLAM_C SINE Alu 1 133 0 30 0 0 0 chr6 2306984 2307014 -180108228 + AT_rich Low_complexity Low_complexity 1 30 0 303 323 81 37 chr6 2309069 2309230 -180106012 + MIR SINE MIR 13 180 -82 323 248 181 53 chr6 2310499 2310765 -180104477 + L2 LINE L2 2678 2977 -337 278 298 69 30 chr6 2310902 2311033 -180104209 + L2 LINE L2 3137 3272 0 606 273 207 19 chr6 2311212 2311531 -180103711 - L2 LINE L2 0 3313 2935 187 294 49 29 chr6 2312552 2312654 -180102588 - L2 LINE L2 -275 3038 2935 330 263 88 18 chr6 2315549 2315663 -180099579 - L2 LINE L2 -1 3271 3150 1086 219 35 0 chr6 2315665 2315866 -180099376 - MER3 DNA MER1_type 0 209 2 430 300 86 49 chr6 2316182 2316425 -180098817 - MIR SINE MIR 0 262 11 530 325 48 11 chr6 2316512 2316780 -180098462 + L2 LINE L2 2543 2820 -494 2358 92 3 0 chr6 2317124 2317419 -180097823 + AluSp SINE Alu 1 296 -17 626 210 150 18 chr6 2317784 2317951 -180097291 - MER5A DNA MER1_type 0 189 1 814 256 58 73 chr6 2318247 2318642 -180096600 - MLT1J LTR MaLR -86 425 37 329 140 0 0 chr6 2318782 2318832 -180096410 + L2 LINE L2 3223 3272 0 307 382 14 7 chr6 2319488 2319632 -180095610 - MIR3 SINE MIR -43 165 21 420 71 0 0 chr6 2320696 2320752 -180094490 + (CA)n Simple_repeat Simple_repeat 2 57 0 189 0 0 0 chr6 2320754 2320775 -180094467 + (TC)n Simple_repeat Simple_repeat 2 22 0 498 273 205 10 chr6 2321326 2321531 -180093711 + MIR SINE MIR 18 262 0 302 274 24 0 chr6 2321649 2321733 -180093509 + MLT1L LTR MaLR 191 276 -339 2184 135 148 13 chr6 2321943 2322320 -180092922 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr6 2323855 2323877 -180091365 + (A)n Simple_repeat Simple_repeat 1 22 0 423 270 56 92 chr6 2324437 2324633 -180090609 + MIR SINE MIR 28 216 -46 1940 197 70 95 chr6 2325077 2325458 -180089784 + L1MC5 LINE L1 6738 7127 -834 2067 159 18 9 chr6 2325458 2325798 -180089444 - MER2 DNA MER2_type 0 344 2 1940 197 70 95 chr6 2325798 2325829 -180089413 + L1MC5 LINE L1 7127 7157 -804 820 204 0 0 chr6 2325829 2325961 -180089281 - FLAM_C SINE Alu 0 133 2 1940 197 70 95 chr6 2325961 2326384 -180088858 + L1MC5 LINE L1 7157 7515 -446 325 234 28 19 chr6 2326386 2326413 -180088829 + GA-rich Low_complexity Low_complexity 2 27 -82 2048 136 96 6 chr6 2326413 2326745 -180088497 - THE1B LTR MaLR -2 362 1 325 234 28 19 chr6 2326745 2326824 -180088418 + GA-rich Low_complexity Low_complexity 27 109 0 918 247 68 45 chr6 2326824 2327265 -180087977 + L1MC5 LINE L1 7475 7925 -36 525 214 0 0 chr6 2327730 2327819 -180087423 + FLAM_A SINE Alu 5 93 -49 22 94 0 0 chr6 2328495 2328559 -180086683 + AT_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr6 2329797 2329823 -180085419 + AT_rich Low_complexity Low_complexity 1 26 0 275 296 68 0 chr6 2329923 2330011 -180085231 - MIR SINE MIR -85 177 84 939 179 6 0 chr6 2330099 2330261 -180084981 + FRAM SINE Alu 1 163 -13 638 206 269 36 chr6 2330601 2330854 -180084388 - MER5C DNA MER1_type 0 324 13 271 109 0 43 chr6 2330966 2330978 -180084264 - MER46A DNA MER2_type -82 154 145 566 181 93 7 chr6 2330978 2331117 -180084125 + Tigger4(Zombi) DNA MER2_type 1 155 -2576 * 5262 139 17 15 chr6 2331111 2331979 -180083263 + Tigger4(Zombi) DNA MER2_type 1862 2731 0 1269 212 42 72 chr6 2332045 2332352 -180082890 + AluJo SINE Alu 4 301 -1 2407 59 0 26 chr6 2332532 2332835 -180082407 - AluY SINE Alu -16 295 1 1686 156 99 47 chr6 2333935 2334247 -180080995 + MLT2D LTR ERVL 8 302 -112 279 0 0 0 chr6 2334247 2334278 -180080964 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1686 156 99 47 chr6 2334278 2334297 -180080945 + MLT2D LTR ERVL 302 319 -95 198 103 0 0 chr6 2334297 2334326 -180080916 + (TA)n Simple_repeat Simple_repeat 1 29 0 1686 156 99 47 chr6 2334326 2334377 -180080865 + MLT2D LTR ERVL 319 411 -3 684 318 180 23 chr6 2334527 2335354 -180079888 - L2 LINE L2 -559 2755 1799 556 214 225 11 chr6 2335962 2336144 -180079098 - MIR SINE MIR 0 262 42 1801 158 0 34 chr6 2336185 2336477 -180078765 + AluJb SINE Alu 1 311 0 199 103 0 0 chr6 2336477 2336506 -180078736 + (TAAA)n Simple_repeat Simple_repeat 3 172 0 216 135 0 0 chr6 2337153 2337190 -180078052 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 297 235 42 42 chr6 2338189 2338308 -180076934 + L1ME4a LINE L1 6001 6119 -2 185 105 0 26 chr6 2338331 2338369 -180076873 + (TA)n Simple_repeat Simple_repeat 2 38 0 1584 166 34 48 chr6 2340437 2340732 -180074510 + AluJo SINE Alu 1 291 -21 1509 198 0 20 chr6 2342423 2342721 -180072521 + AluJb SINE Alu 1 292 -20 256 214 207 35 chr6 2343735 2343880 -180071362 - LTR67 LTR ERVL -25 532 363 670 194 29 24 chr6 2344089 2344259 -180070983 + L1MB5 LINE L1 5941 6111 -63 874 206 75 20 chr6 2344532 2344685 -180070557 - MER58A DNA MER1_type -2207 213 45 1955 138 0 16 chr6 2344685 2344990 -180070252 + AluSx SINE Alu 1 300 -12 874 206 75 20 chr6 2344990 2345035 -180070207 - MER58A DNA MER1_type -2375 45 4 384 181 181 0 chr6 2345133 2345227 -180070015 - L2 LINE L2 -6 3307 3197 2125 82 0 4 chr6 2345512 2345779 -180069463 + AluSq SINE Alu 40 305 -8 2308 77 3 0 chr6 2346012 2346297 -180068945 + AluSp SINE Alu 22 307 -6 1518 196 26 22 chr6 2346671 2346982 -180068260 + AluJo SINE Alu 1 312 0 1808 227 57 41 chr6 2347052 2347563 -180067679 + LTR40a LTR ERVL 1 519 0 2307 106 0 0 chr6 2348667 2348969 -180066273 - AluSx SINE Alu -10 302 1 1288 146 77 49 chr6 2349253 2349499 -180065743 + AluJo SINE Alu 1 253 -59 484 111 81 0 chr6 2349901 2350000 -180065242 + L1MA5 LINE L1 6194 6300 0 2158 113 7 10 chr6 2350192 2350493 -180064749 + AluSx SINE Alu 1 300 -12 2281 78 0 45 chr6 2350835 2351144 -180064098 - AluY SINE Alu -16 295 1 987 154 13 0 chr6 2351621 2351777 -180063465 + AluSg/x SINE Alu 153 310 0 269 233 0 0 chr6 2351831 2351891 -180063351 + MIR SINE MIR 200 259 -3 1305 223 18 24 chr6 2352016 2352344 -180062898 + MSTB1-int LTR MaLR 471 796 -855 977 147 73 82 chr6 2352366 2352598 -180062644 + MSTB1-int LTR MaLR 1422 1651 0 2476 138 58 10 chr6 2352598 2353010 -180062232 + MSTB1 LTR MaLR 1 432 0 335 271 231 5 chr6 2353808 2354011 -180061231 + MIR SINE MIR 4 252 -10 1728 158 3 37 chr6 2354991 2355313 -180059929 - AluJo SINE Alu -1 311 1 491 247 140 5 chr6 2355350 2355536 -180059706 + MIR SINE MIR 51 261 -1 24 0 0 0 chr6 2356434 2356458 -180058784 + GC_rich Low_complexity Low_complexity 1 24 0 2434 76 0 3 chr6 2358097 2358398 -180056844 + AluSq SINE Alu 1 300 -13 1617 172 151 9 chr6 2358671 2359002 -180056240 - MLT1B LTR MaLR -10 380 3 1123 167 44 0 chr6 2359233 2359437 -180055805 + MER20 DNA MER1_type 6 218 -1 4318 181 35 27 chr6 2360091 2360930 -180054312 + MER21B LTR ERV1 10 854 -9 289 320 17 3 chr6 2360939 2361076 -180054166 - MIR SINE MIR -62 146 18 590 182 172 35 chr6 2361417 2361620 -180053622 - L1MD2 LINE L1 -11 6348 6118 1350 187 97 0 chr6 2361627 2361895 -180053347 - AluJb SINE Alu -18 294 1 822 151 0 22 chr6 2361902 2362041 -180053201 - AluJo SINE Alu -176 136 1 2039 189 72 72 chr6 2362041 2362233 -180053009 - L1MD2 LINE L1 -226 6133 5942 1637 181 29 0 chr6 2362233 2362509 -180052733 + AluJo SINE Alu 1 284 -28 2039 189 72 72 chr6 2362509 2362636 -180052606 - L1MD2 LINE L1 -417 5942 5816 2141 101 3 3 chr6 2362636 2362923 -180052319 - AluSx SINE Alu -25 287 1 712 268 60 40 chr6 2362923 2363173 -180052069 - L1MB8 LINE L1 -353 5825 5571 2039 189 72 72 chr6 2362923 2363141 -180052101 - L1MD2 LINE L1 -542 5817 5595 271 221 13 26 chr6 2363196 2363273 -180051969 + LTR33A LTR ERVL 446 521 -2 222 37 0 0 chr6 2363411 2363438 -180051804 + (T)n Simple_repeat Simple_repeat 1 27 0 2410 90 0 3 chr6 2363679 2363980 -180051262 - AluSp SINE Alu -13 300 1 1157 134 0 0 chr6 2364291 2364462 -180050780 - AluSx SINE Alu -4 308 138 572 114 0 0 chr6 2364462 2364541 -180050701 - AluSx SINE Alu -229 84 6 213 132 0 0 chr6 2364556 2364594 -180050648 + (T)n Simple_repeat Simple_repeat 1 38 0 438 276 0 24 chr6 2365825 2365952 -180049290 + MLT1L LTR MaLR 127 250 -365 1390 246 57 38 chr6 2366066 2366554 -180048688 - MLT1H1 LTR MaLR -83 472 7 1845 245 39 11 chr6 2366615 2367126 -180048116 - MLT1E LTR MaLR 0 593 1 773 232 40 119 chr6 2367141 2367649 -180047593 - MLT1H1 LTR MaLR -34 521 71 2557 77 3 0 chr6 2367868 2368180 -180047062 + AluSp SINE Alu 1 313 0 478 281 88 11 chr6 2368339 2368556 -180046686 + MLT1L LTR MaLR 263 605 -10 225 0 0 0 chr6 2368820 2368845 -180046397 + (T)n Simple_repeat Simple_repeat 1 25 0 960 186 155 75 chr6 2368866 2369215 -180046027 + MSTD LTR MaLR 1 377 -19 414 0 0 0 chr6 2369215 2369261 -180045981 + (CA)n Simple_repeat Simple_repeat 1 46 0 1885 216 42 13 chr6 2369428 2369882 -180045360 - MLT1C LTR MaLR 0 467 1 452 268 82 41 chr6 2370098 2370318 -180044924 - MIR SINE MIR -14 248 20 647 290 71 17 chr6 2370407 2370793 -180044449 - L1MC/D LINE L1 -743 5403 5188 1156 161 75 54 chr6 2370868 2371034 -180044208 - AluJo SINE Alu -15 297 121 207 0 0 0 chr6 2371034 2371057 -180044185 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1156 161 75 54 chr6 2371057 2371170 -180044072 - AluJo SINE Alu -191 121 12 2278 118 0 7 chr6 2371463 2371767 -180043475 - AluSx SINE Alu -10 302 1 25 31 0 0 chr6 2372246 2372278 -180042964 + AT_rich Low_complexity Low_complexity 1 32 0 6337 195 30 23 chr6 2372281 2373629 -180041613 - L1MC1 LINE L1 0 6333 4957 231 36 0 0 chr6 2373629 2373657 -180041585 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6337 195 30 23 chr6 2373657 2374882 -180040360 - L1MC1 LINE L1 -1376 4957 3742 678 222 15 0 chr6 2375078 2375213 -180040029 - MLT1G1 LTR MaLR 0 595 459 390 265 185 31 chr6 2375222 2375463 -180039779 - MLT1G1 LTR MaLR -196 346 98 * 973 195 5 30 chr6 2375445 2375645 -180039597 + MLT1B LTR MaLR 196 390 0 1232 174 121 19 chr6 2376493 2376757 -180038485 - MER21B LTR ERV1 -554 309 19 380 279 0 0 chr6 2376780 2376859 -180038383 - MER21B LTR ERV1 -773 90 12 22 0 0 0 chr6 2377762 2377784 -180037458 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr6 2377957 2377980 -180037262 + (A)n Simple_repeat Simple_repeat 1 23 0 263 169 17 51 chr6 2378501 2378560 -180036682 - L2 LINE L2 0 3313 3257 1606 138 177 16 chr6 2379313 2379624 -180035618 + MSTA LTR MaLR 68 428 0 22 0 0 0 chr6 2381570 2381592 -180033650 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 2381766 2381787 -180033455 + (A)n Simple_repeat Simple_repeat 1 21 0 263 169 17 51 chr6 2382308 2382367 -180032875 - L2 LINE L2 0 3313 3257 604 92 0 0 chr6 2382574 2382650 -180032592 + AluSq/x SINE Alu 36 111 -201 1442 267 246 5 chr6 2382699 2383186 -180032056 - L2 LINE L2 -1937 1377 1009 342 0 0 0 chr6 2383186 2383224 -180032018 + (TG)n Simple_repeat Simple_repeat 2 39 0 1442 267 246 5 chr6 2383224 2383628 -180031614 - L2 LINE L2 -2305 1009 271 301 221 240 10 chr6 2383632 2383736 -180031506 - MER5A DNA MER1_type -1 188 61 353 125 47 0 chr6 2383783 2383847 -180031395 - MER5A DNA MER1_type -118 71 5 631 238 63 0 chr6 2383850 2383993 -180031249 + MER33 DNA MER1_type 8 159 -165 1489 158 12 12 chr6 2383998 2384244 -180030998 + AluJo SINE Alu 5 250 -62 1536 192 38 23 chr6 2384264 2384608 -180030634 - MLT1A1 LTR MaLR -11 354 6 1927 156 0 14 chr6 2384627 2384915 -180030327 - AluJo SINE Alu -28 284 1 414 189 76 0 chr6 2384916 2385048 -180030194 + MER33 DNA MER1_type 204 345 -18 200 313 142 24 chr6 2385089 2385300 -180029942 - L2 LINE L2 -3037 277 42 747 229 16 0 chr6 2385301 2385484 -180029758 - MER114 LTR ERV -447 201 16 5048 135 19 37 chr6 2385579 2386466 -180028776 - MER4D LTR ERV1 0 872 2 569 279 31 12 chr6 2386891 2387052 -180028190 + MER41C LTR ERV1 1 164 -390 381 216 14 0 chr6 2387043 2387117 -180028125 + MER41D LTR ERV1 483 557 0 * 1220 168 0 0 chr6 2388673 2388846 -180026396 + FAM SINE Alu 1 173 -2 833 201 0 12 chr6 2390211 2390375 -180024867 + MER5B DNA MER1_type 17 178 0 632 243 18 41 chr6 2391134 2391362 -180023880 + L1ME2 LINE L1 5941 6166 0 321 285 59 32 chr6 2391391 2391577 -180023665 + L1MC4 LINE L1 7841 8031 -11 398 280 49 7 chr6 2391754 2391897 -180023345 - MIR SINE MIR -2 260 112 198 0 0 0 chr6 2391973 2391995 -180023247 + (T)n Simple_repeat Simple_repeat 1 22 0 301 143 0 20 chr6 2391995 2392044 -180023198 - MER5B DNA MER1_type -114 64 17 21 0 0 0 chr6 2392183 2392204 -180023038 + AT_rich Low_complexity Low_complexity 1 21 0 212 59 29 0 chr6 2392239 2392273 -180022969 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2119 75 0 0 chr6 2392275 2392529 -180022713 - AluY SINE Alu -31 280 27 * 2377 101 0 0 chr6 2392527 2392833 -180022409 - AluSx SINE Alu -6 306 1 2133 117 7 0 chr6 2392961 2393251 -180021991 - AluSx SINE Alu -20 292 1 8649 165 14 23 chr6 2393253 2393685 -180021557 - L1MA9 LINE L1 -61 6251 5817 2440 68 0 0 chr6 2393685 2393980 -180021262 - AluY SINE Alu 0 311 17 8649 165 14 23 chr6 2393980 2396092 -180019150 - L1MA9 LINE L1 -495 5817 3728 831 364 35 33 chr6 2397480 2398022 -180017220 - L2 LINE L2 -30 3242 2695 1808 140 0 53 chr6 2398028 2398176 -180017066 + AluSx SINE Alu 1 124 -188 2352 92 10 0 chr6 2398176 2398481 -180016761 + AluSp SINE Alu 1 308 -5 1808 140 0 53 chr6 2398481 2398653 -180016589 + AluSx SINE Alu 124 304 -8 23 0 0 0 chr6 2398727 2398750 -180016492 + AT_rich Low_complexity Low_complexity 1 23 0 950 272 100 69 chr6 2399391 2399830 -180015412 + L1MEc LINE L1 786 1210 -5186 2405 128 10 49 chr6 2399830 2400220 -180015022 - THE1C LTR MaLR 0 375 1 950 272 100 69 chr6 2400220 2400510 -180014732 + L1MEc LINE L1 1210 1490 -4906 754 197 31 0 chr6 2400510 2400637 -180014605 + FLAM_A SINE Alu 1 131 -2 950 272 100 69 chr6 2400637 2400906 -180014336 + L1MEc LINE L1 1490 1816 -4580 1141 274 133 9 chr6 2400962 2401611 -180013631 + L1MEc LINE L1 3198 3926 -2289 32620 107 14 59 chr6 2401617 2408063 -180007179 + L1PA7 LINE L1 12 6153 -1 6085 143 35 14 chr6 2408185 2409548 -180005694 + L1PB3 LINE L1 4186 5518 -705 1977 146 9 25 chr6 2409548 2409863 -180005379 - AluJo SINE Alu -2 310 1 6085 143 35 14 chr6 2409863 2409956 -180005286 + L1PB3 LINE L1 5518 5607 -616 1600 149 16 68 chr6 2409956 2410277 -180004965 + AluJb SINE Alu 3 306 -6 6085 143 35 14 chr6 2410277 2410820 -180004422 + L1PB3 LINE L1 5607 6223 0 2020 243 141 17 chr6 2410854 2411743 -180003499 + L1M4 LINE L1 4268 5266 -880 186 43 0 0 chr6 2412351 2412374 -180002868 + (T)n Simple_repeat Simple_repeat 1 23 0 1995 148 44 3 chr6 2412691 2413030 -180002212 - LTR35 LTR ERV1 0 618 266 1136 99 12 17 chr6 2413030 2413202 -180002040 + THE1C-int LTR MaLR 1410 1580 0 2231 104 6 47 chr6 2413202 2413567 -180001675 + THE1C LTR MaLR 1 350 -25 227 100 0 0 chr6 2413572 2413602 -180001640 + MER48 LTR ERV1 358 387 0 2227 191 90 44 chr6 2413623 2414140 -180001102 + MER31-int LTR ERV1 3266 3811 -1125 2421 148 13 82 chr6 2414140 2414593 -180000649 - MER61B LTR ERV1 -3 422 1 2227 191 90 44 chr6 2414593 2414620 -180000622 + MER31-int LTR ERV1 3811 3835 -1101 1269 150 0 162 chr6 2414620 2414979 -180000263 + AluSx SINE Alu 6 306 -6 939 164 26 9 chr6 2414987 2415163 -180000079 + MER31-int LTR ERV1 3861 4010 -926 19579 62 3 22 chr6 2415203 2418389 -179996853 + L1PA6 LINE L1 2974 6154 0 24424 74 3 5 chr6 2418394 2421458 -179993784 + HERVL-A1 LTR ERVL 1564 4620 -1034 31742 61 35 26 chr6 2421559 2426088 -179989154 - Harlequin LTR ERV1 -1684 5212 575 476 35 0 0 chr6 2426188 2426246 -179988996 + HERVL-A1 LTR ERVL 5597 5654 0 3335 68 57 9 chr6 2426246 2426629 -179988613 + MLT2A1 LTR ERVL 1 407 -37 243 0 0 0 chr6 2426629 2426656 -179988586 + (TA)n Simple_repeat Simple_repeat 2 28 0 3335 68 57 9 chr6 2426656 2426696 -179988546 + MLT2A1 LTR ERVL 407 444 0 838 221 111 23 chr6 2428540 2428556 -179986686 + MLT1J LTR MaLR 217 230 -281 2418 102 0 3 chr6 2428556 2428870 -179986372 - AluSq SINE Alu 0 313 1 838 221 111 23 chr6 2428870 2429070 -179986172 + MLT1J LTR MaLR 230 452 -59 557 184 75 48 chr6 2429161 2429297 -179985945 + MLT1A1 LTR MaLR 1 140 -225 1479 148 4 13 chr6 2429297 2429534 -179985708 - MER21B LTR ERV1 0 863 629 2010 166 73 34 chr6 2429534 2429974 -179985268 - LTR2B LTR ERV1 0 490 34 45379 64 20 15 chr6 2429988 2436774 -179978468 - Harlequin LTR ERV1 0 6896 1 2006 184 84 32 chr6 2436774 2437236 -179978006 - LTR2B LTR ERV1 0 490 5 * 3525 171 57 11 chr6 2437225 2437259 -179977983 - MER21B LTR ERV1 -225 638 607 207 0 0 0 chr6 2437259 2437282 -179977960 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3525 171 57 11 chr6 2437282 2437857 -179977385 - MER21B LTR ERV1 -256 607 1 2241 167 30 16 chr6 2437939 2438378 -179976864 - MER21B-int LTR ERV1 -52 4139 3699 2113 184 100 107 chr6 2438382 2439219 -179976023 - LTR28 LTR ERV1 0 1020 109 400 239 254 0 chr6 2439231 2439373 -179975869 - LTR28 LTR ERV1 -842 178 1 3009 165 79 2 chr6 2439373 2439954 -179975288 - MER21B-int LTR ERV1 -494 3697 3072 9055 210 39 30 chr6 2440396 2442119 -179973123 - L1M4c LINE L1 -1167 5215 3509 2335 119 3 0 chr6 2442119 2442430 -179972812 - AluSx SINE Alu 0 312 1 9055 210 39 30 chr6 2442430 2443061 -179972181 - L1M4c LINE L1 -2873 3509 2885 2092 149 126 5 chr6 2443061 2443443 -179971799 + MSTA LTR MaLR 1 428 0 8941 177 29 1 chr6 2443443 2445049 -179970193 + MSTA-int LTR MaLR 1 1651 0 2046 147 126 11 chr6 2445049 2445431 -179969811 + MSTA LTR MaLR 1 426 -2 9055 210 39 30 chr6 2445431 2445795 -179969447 - L1M4c LINE L1 -3496 2886 2470 916 234 60 22 chr6 2445816 2446064 -179969178 - L1M4c LINE L1 -3916 2468 2231 500 30 0 15 chr6 2446064 2446131 -179969111 + (TA)n Simple_repeat Simple_repeat 2 67 0 2231 101 7 13 chr6 2446131 2446429 -179968813 - AluSp SINE Alu -17 296 1 916 234 60 22 chr6 2446429 2446543 -179968699 - L1M4c LINE L1 -4152 2232 2091 1831 258 30 25 chr6 2446713 2447356 -179967886 - L1M4c LINE L1 -4663 1721 1076 371 98 16 0 chr6 2447384 2447445 -179967797 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1972 158 10 0 chr6 2447445 2447749 -179967493 - AluSx SINE Alu -5 307 1 843 275 48 3 chr6 2447757 2447959 -179967283 - L1 LINE L1 -4813 1840 1616 267 31 0 0 chr6 2447959 2447991 -179967251 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 843 275 48 3 chr6 2447991 2448123 -179967119 - L1 LINE L1 -5037 1616 1491 246 345 11 0 chr6 2448402 2448489 -179966753 - L1 LINE L1 -5219 1434 1347 285 200 0 0 chr6 2449000 2449060 -179966182 + L1MC5 LINE L1 7345 7404 -557 891 234 10 5 chr6 2449368 2449577 -179965665 - MLT1C LTR MaLR 0 467 258 735 226 14 14 chr6 2449612 2449794 -179965448 - FRAM SINE Alu 0 182 1 1844 160 49 0 chr6 2449806 2450122 -179965120 - AluSx SINE Alu 0 312 6 662 218 71 0 chr6 2450126 2450296 -179964946 - MLT1C LTR MaLR -285 182 1 1586 111 0 5 chr6 2450389 2450596 -179964646 + AluSg/x SINE Alu 95 300 -10 1305 217 41 77 chr6 2451349 2451792 -179963450 + L1ME2 LINE L1 5555 5981 -183 311 143 32 0 chr6 2451842 2451905 -179963337 - L1PA13 LINE L1 0 6163 6099 378 295 75 20 chr6 2452397 2452692 -179962550 + L1MEd LINE L1 981 1291 -4914 234 207 207 11 chr6 2452859 2452946 -179962296 + HAL1 LINE L1 1500 1603 -904 1698 171 24 20 chr6 2453051 2453156 -179962086 + AluJo SINE Alu 6 109 -203 2142 129 36 38 chr6 2453156 2453521 -179961721 - THE1B LTR MaLR 0 364 1 1698 171 24 20 chr6 2453521 2453707 -179961535 + AluJo SINE Alu 109 298 -14 1564 173 32 160 chr6 2453962 2454523 -179960719 + LTR45B LTR ERV1 1 489 0 2409 95 0 0 chr6 2454572 2454919 -179960323 + L1PB1 LINE L1 5624 5970 -181 942 112 0 0 chr6 2454919 2455044 -179960198 + AluSq/x SINE Alu 1 125 -188 1247 116 5 11 chr6 2455050 2455239 -179960003 + L1PB1 LINE L1 5959 6146 -5 281 216 14 0 chr6 2455355 2455429 -179959813 - Charlie1 DNA MER1_type -506 2255 2181 390 245 73 55 chr6 2455477 2455804 -179959438 + L1MEd LINE L1 2120 2452 -3944 1208 149 6 0 chr6 2455816 2455991 -179959251 + AluSx SINE Alu 1 176 -136 619 224 22 22 chr6 2456016 2456199 -179959043 + L1ME3A LINE L1 5774 5956 -214 339 272 0 0 chr6 2456362 2456487 -179958755 + (TA)n Simple_repeat Simple_repeat 1 125 0 2334 160 54 69 chr6 2456490 2457085 -179958157 + L1MA5A LINE L1 1416 2001 -4788 576 187 0 0 chr6 2457086 2457209 -179958033 + GA-rich Low_complexity Low_complexity 3 125 0 2242 233 19 4 chr6 2457209 2457796 -179957446 + L1MA5A LINE L1 1987 2572 -4217 2350 88 109 21 chr6 2457797 2458183 -179957059 - MER4A LTR ERV1 0 664 245 8153 197 16 26 chr6 2458218 2458943 -179956299 + L1MA5A LINE L1 3388 4119 -2669 1978 132 0 7 chr6 2458943 2459215 -179956027 + AluSg SINE Alu 1 270 -40 8153 197 16 26 chr6 2459215 2460486 -179954756 + L1MA5A LINE L1 4119 5362 -1426 1523 195 85 13 chr6 2461641 2462030 -179953212 + L1MA5A LINE L1 5344 5760 -1028 732 74 11 0 chr6 2462035 2462130 -179953112 - AluSg/x SINE Alu -102 210 115 3819 126 23 16 chr6 2462253 2462332 -179952910 + L1MA5A LINE L1 5898 5975 -964 2166 135 0 0 chr6 2462332 2462628 -179952614 + AluSx SINE Alu 1 296 -16 3819 126 23 16 chr6 2462628 2463081 -179952161 + L1MA5A LINE L1 5975 6439 -500 432 0 0 0 chr6 2463081 2463129 -179952113 + (CA)n Simple_repeat Simple_repeat 2 49 0 3819 126 23 16 chr6 2463129 2463279 -179951963 + L1MA5A LINE L1 6439 6586 -353 373 75 25 88 chr6 2463275 2463297 -179951945 - L1MB4 LINE L1 -77 6103 6081 * 514 99 0 25 chr6 2463297 2463378 -179951864 - MADE1 DNA Mariner 0 80 2 373 75 25 88 chr6 2463378 2463435 -179951807 - L1MB4 LINE L1 -99 6081 6029 243 241 25 51 chr6 2463538 2463617 -179951625 - L2 LINE L2 0 3313 3237 * 292 243 14 0 chr6 2463614 2463684 -179951558 - MIR SINE MIR -3 259 189 270 244 38 28 chr6 2464245 2464363 -179950879 + MER5A DNA MER1_type 1 181 -8 2336 95 3 13 chr6 2464543 2464859 -179950383 - AluSq SINE Alu 0 313 1 300 247 54 11 chr6 2464871 2464964 -179950278 + MER58C DNA MER1_type 119 215 0 356 231 8 45 chr6 2465340 2465474 -179949768 - L1MC/D LINE L1 -2006 5802 5674 1866 157 11 55 chr6 2466049 2466091 -179949151 + MER89 LTR ERV1 195 237 -322 1800 140 11 18 chr6 2466091 2466376 -179948866 - AluJb SINE Alu -19 293 11 1866 157 11 55 chr6 2466376 2466715 -179948527 + MER89 LTR ERV1 237 559 0 428 167 78 29 chr6 2467007 2467109 -179948133 + MER89-int LTR ERV1 444 550 -6251 317 239 0 0 chr6 2467115 2467186 -179948056 + MER89-int LTR ERV1 520 590 -6211 * 1062 241 96 21 chr6 2467177 2467551 -179947691 + MER89-int LTR ERV1 878 1279 -5522 645 175 0 0 chr6 2467551 2467654 -179947588 + FLAM_C SINE Alu 16 118 -25 1042 212 8 115 chr6 2467680 2468081 -179947161 + MER89-int LTR ERV1 1274 1631 -5170 1832 248 77 64 chr6 2468146 2468915 -179946327 + MER89-int LTR ERV1 1650 2428 -4373 4149 143 18 28 chr6 2469206 2469462 -179945780 - L1PA16 LINE L1 0 6166 5909 1903 147 0 39 chr6 2469462 2469774 -179945468 + AluJb SINE Alu 1 300 -12 4149 143 18 28 chr6 2469774 2469916 -179945326 - L1PA16 LINE L1 -257 5909 5767 2172 75 3 10 chr6 2469916 2470232 -179945010 - AluY SINE Alu 0 311 1 4149 143 18 28 chr6 2470232 2470646 -179944596 - L1PA16 LINE L1 -399 5767 5361 509 229 9 9 chr6 2471639 2471757 -179943485 + MIR3 SINE MIR 69 187 -21 25 31 0 0 chr6 2472154 2472186 -179943056 + AT_rich Low_complexity Low_complexity 1 32 0 910 121 7 0 chr6 2472198 2472347 -179942895 + L1MA5A LINE L1 6146 6295 -2 487 224 74 20 chr6 2472800 2472991 -179942251 + MER58 DNA MER1_type 5 2417 -3 785 122 0 0 chr6 2474986 2475101 -179940141 - FLAM_C SINE Alu -17 116 2 2624 43 0 0 chr6 2475111 2475412 -179939830 - AluY SINE Alu -10 301 1 239 272 101 32 chr6 2475831 2475989 -179939253 + L2 LINE L2 2537 2705 -609 3997 162 34 28 chr6 2475991 2476036 -179939206 - L1MB4 LINE L1 -6 6174 6131 2401 92 0 3 chr6 2476036 2476342 -179938900 - AluSx SINE Alu -7 305 1 3997 162 34 28 chr6 2476342 2477190 -179938052 - L1MB4 LINE L1 -49 6131 5276 262 186 0 0 chr6 2477443 2477486 -179937756 - Alu SINE Alu -264 44 2 45 19 0 0 chr6 2527983 2528035 -179887207 + AT_rich Low_complexity Low_complexity 1 52 0 2725 18 16 0 chr6 2528035 2528435 -179886807 - L1PA4 LINE L1 -677 5478 5075 5972 21 6 0 chr6 2528435 2529113 -179886129 + L1PA4 LINE L1 5472 6154 -1 40 0 0 0 chr6 2529142 2529182 -179886060 + AT_rich Low_complexity Low_complexity 1 40 0 1051 260 9 0 chr6 2529414 2529633 -179885609 + MER58A DNA MER1_type 4 224 0 1143 158 164 75 chr6 2529882 2530217 -179885025 + MLT1A1 LTR MaLR 1 365 0 243 331 7 44 chr6 2530348 2530484 -179884758 - L2 LINE L2 -213 3059 2929 271 272 163 34 chr6 2531303 2531450 -179883792 + MIR3 SINE MIR 32 197 -11 356 211 56 7 chr6 2532483 2532625 -179882617 + (CA)n Simple_repeat Simple_repeat 2 150 0 327 131 54 15 chr6 2532664 2532794 -179882448 + (CA)n Simple_repeat Simple_repeat 2 136 0 473 208 46 17 chr6 2532836 2533009 -179882233 + (CA)n Simple_repeat Simple_repeat 2 179 0 1130 191 106 25 chr6 2533947 2534229 -179881013 - MER2 DNA MER2_type -28 317 13 425 198 10 0 chr6 2534529 2534630 -179880612 + GA-rich Low_complexity Low_complexity 3 104 0 305 198 293 0 chr6 2534630 2534746 -179880496 + MER103 DNA DNA 1 150 -16 207 0 0 0 chr6 2535749 2535772 -179879470 + (A)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr6 2536011 2536036 -179879206 + AT_rich Low_complexity Low_complexity 1 25 0 207 301 186 9 chr6 2536148 2536261 -179878981 + MIR3 SINE MIR 9 141 -67 343 309 32 0 chr6 2536732 2536858 -179878384 + L2 LINE L2 3182 3311 -2 2370 85 0 0 chr6 2537403 2537698 -179877544 + AluSc SINE Alu 1 295 -14 2228 122 0 6 chr6 2538044 2538355 -179876887 + AluSx SINE Alu 3 311 -1 1431 45 6 0 chr6 2540181 2540359 -179874883 - L1PA4 LINE L1 -3 6152 5974 392 171 14 0 chr6 2540603 2540673 -179874569 - MER82 DNA MER2_type 0 653 583 720 79 0 0 chr6 2540674 2540763 -179874479 - AluSq/x SINE Alu -204 109 21 555 107 19 10 chr6 2543244 2543254 -179871988 + (TCTA)n Simple_repeat Simple_repeat 1 9 -95 1422 224 120 41 chr6 2543254 2543719 -179871523 + MLT1D LTR MaLR 1 502 -3 555 107 19 10 chr6 2543719 2543811 -179871431 + (TCTA)n Simple_repeat Simple_repeat 9 104 0 2061 125 37 28 chr6 2543813 2544140 -179871102 + THE1B LTR MaLR 1 330 -34 396 271 13 12 chr6 2545370 2545689 -179869553 + (CA)n Simple_repeat Simple_repeat 1 319 0 257 251 0 123 chr6 2545869 2546040 -179869202 + MLT1K LTR MaLR 277 426 -162 211 200 0 0 chr6 2546054 2546089 -179869153 + polypurine Low_complexity Low_complexity 2 36 0 310 260 20 30 chr6 2546118 2546218 -179869024 + MLT1K LTR MaLR 472 570 -18 379 227 85 102 chr6 2546422 2546598 -179868644 - L2 LINE L2 -2 3311 3139 519 234 65 13 chr6 2546600 2546754 -179868488 + L1M4 LINE L1 5604 5765 -419 779 101 8 39 chr6 2547399 2547528 -179867714 - L1PA8 LINE L1 -1 6171 6047 190 270 90 45 chr6 2547625 2547736 -179867506 + L2 LINE L2 2928 3043 -229 313 294 87 0 chr6 2548224 2548350 -179866892 + L2 LINE L2 3136 3272 0 1954 141 77 0 chr6 2549243 2549556 -179865686 - MER1B DNA MER1_type 0 337 1 537 214 151 13 chr6 2549685 2549844 -179865398 + MER5A DNA MER1_type 4 184 -5 394 278 51 40 chr6 2549893 2550069 -179865173 + MIR SINE MIR 49 226 -36 277 293 281 0 chr6 2551873 2552040 -179863202 - MIR SINE MIR 0 262 49 243 259 214 0 chr6 2553142 2553273 -179861969 + MIR SINE MIR 48 206 -56 312 241 50 78 chr6 2554373 2554514 -179860728 - L2 LINE L2 0 3272 3136 332 310 120 0 chr6 2555277 2555377 -179859865 + MER81 DNA DNA 1 112 -2 252 288 91 0 chr6 2555397 2555529 -179859713 - MIR SINE MIR -62 200 57 1184 178 45 29 chr6 2555557 2555799 -179859443 - MLT1F1 LTR MaLR 0 567 322 15336 122 37 10 chr6 2556000 2556761 -179858481 + Tigger1 DNA MER2_type 1 740 -1678 2323 156 62 5 chr6 2556761 2557164 -179858078 - MSTB LTR MaLR 0 426 1 15336 122 37 10 chr6 2557164 2558755 -179856487 + Tigger1 DNA MER2_type 740 2418 0 2313 97 0 7 chr6 2558791 2559091 -179856151 + AluSx SINE Alu 1 298 -14 24 32 0 0 chr6 2559302 2559333 -179855909 + AT_rich Low_complexity Low_complexity 1 31 0 269 272 7 66 chr6 2559660 2559803 -179855439 + MIR SINE MIR 92 221 -41 205 176 0 20 chr6 2560518 2560569 -179854673 + L2 LINE L2 2228 2277 -1037 757 214 12 24 chr6 2560570 2560738 -179854504 + MER63B DNA MER1_type 2 167 -269 868 298 96 51 chr6 2560776 2561388 -179853854 + L2 LINE L2 2307 2953 -319 2135 119 0 0 chr6 2561388 2561681 -179853561 - AluSx SINE Alu -15 297 5 868 298 96 51 chr6 2561681 2561758 -179853484 + L2 LINE L2 2953 3025 -247 793 281 30 20 chr6 2561801 2562098 -179853144 - L1M3 LINE L1 -606 5577 5275 2116 107 78 29 chr6 2562098 2562445 -179852797 - THE1B LTR MaLR 0 364 1 793 281 30 20 chr6 2562445 2562571 -179852671 - L1M3 LINE L1 -908 5275 5152 793 251 121 57 chr6 2562642 2563343 -179851899 - L1MEd LINE L1 -4722 1588 820 1431 196 31 14 chr6 2563343 2563634 -179851608 + AluJo SINE Alu 1 296 -16 793 251 121 57 chr6 2563634 2563681 -179851561 - L1MEd LINE L1 -5490 820 777 507 17 0 0 chr6 2563696 2563756 -179851486 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 300 345 84 35 chr6 2563851 2564054 -179851188 + LTR16A LTR ERVL 119 331 -119 298 282 243 24 chr6 2564226 2564282 -179850960 - L1MEd LINE L1 -5446 673 631 1230 203 93 32 chr6 2564282 2564627 -179850615 + MER47A DNA MER2_type 1 366 0 298 282 243 24 chr6 2564627 2564903 -179850339 - L1MEd LINE L1 -5488 631 268 1884 133 60 0 chr6 2565914 2566199 -179849043 - AluJb SINE Alu -10 302 1 872 144 8 0 chr6 2566201 2566333 -179848909 - AluJb SINE Alu -179 133 1 232 328 62 25 chr6 2566338 2566692 -179848550 - L2 LINE L2 -1611 1703 1337 616 224 92 6 chr6 2567228 2567402 -179847840 - MER5A DNA MER1_type 0 189 1 2255 106 0 0 chr6 2567757 2568049 -179847193 - AluSx SINE Alu -16 296 5 23 0 0 0 chr6 2568678 2568701 -179846541 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr6 2569457 2569499 -179845743 + AT_rich Low_complexity Low_complexity 1 42 0 240 256 8 29 chr6 2569625 2569713 -179845529 + CT-rich Low_complexity Low_complexity 1 86 0 1800 166 10 3 chr6 2570077 2570372 -179844870 - AluJo SINE Alu -13 299 3 760 294 35 8 chr6 2572200 2572455 -179842787 - MIR SINE MIR 0 262 1 907 170 18 8 chr6 2572517 2572917 -179842325 + CT-rich Low_complexity Low_complexity 1 404 0 1008 165 62 0 chr6 2572928 2573104 -179842138 - AluJo SINE Alu -4 308 122 303 274 12 0 chr6 2573106 2573190 -179842052 + L1MC4 LINE L1 6608 6692 -1350 1499 165 44 0 chr6 2573200 2573449 -179841793 - AluJo SINE Alu -30 282 23 578 217 140 27 chr6 2573552 2573788 -179841454 + MLT1C LTR MaLR 147 425 -80 939 183 50 72 chr6 2573893 2574172 -179841070 - Charlie1 DNA MER1_type 0 2761 2489 44262 29 21 1 chr6 2574172 2580201 -179835041 - L1HS LINE L1 -3 6152 1 1443 203 34 6 chr6 2580204 2580554 -179834688 - Charlie1 DNA MER1_type -257 2504 2145 4812 171 21 19 chr6 2580564 2580607 -179834635 - L1MB3 LINE L1 -2 6181 6140 2271 94 17 3 chr6 2580607 2580904 -179834338 + AluSx SINE Alu 2 302 -10 4812 171 21 19 chr6 2580904 2581247 -179833995 - L1MB3 LINE L1 -43 6140 5799 297 51 0 0 chr6 2581247 2581286 -179833956 + (TG)n Simple_repeat Simple_repeat 2 40 0 4812 171 21 19 chr6 2581286 2582050 -179833192 - L1MB3 LINE L1 -384 5799 5027 1008 207 34 23 chr6 2582055 2582407 -179832835 - MLT1E LTR MaLR -124 453 9 221 153 143 102 chr6 2582414 2582512 -179832730 - L2 LINE L2 -597 2717 2616 235 274 32 0 chr6 2582545 2582607 -179832635 - L2 LINE L2 -9 3304 3241 2115 135 3 22 chr6 2582645 2583009 -179832233 - L1MA5 LINE L1 -6 6294 5938 925 157 7 0 chr6 2583011 2583164 -179832078 + L1MA5 LINE L1 5787 5940 -360 186 271 78 47 chr6 2584407 2584536 -179830706 - MER5A DNA MER1_type -2 187 55 * 202 310 70 10 chr6 2584437 2584537 -179830705 + MER5A DNA MER1_type 41 146 -43 2043 276 109 13 chr6 2584582 2585648 -179829594 - L2 LINE L2 -24 3289 1917 744 277 100 0 chr6 2585653 2585953 -179829289 - L2 LINE L2 -1622 1692 1363 495 330 75 4 chr6 2585960 2586199 -179829043 - L2 LINE L2 -2194 1120 865 213 39 0 0 chr6 2588016 2588042 -179827200 + (TA)n Simple_repeat Simple_repeat 2 27 0 1218 266 110 2 chr6 2588339 2588783 -179826459 + L1ME3 LINE L1 5659 6150 -12 361 266 243 54 chr6 2589926 2590404 -179824838 - MLT1K LTR MaLR -18 570 3 246 335 32 11 chr6 2590994 2591114 -179824128 + MIR3 SINE MIR 30 154 -54 357 273 41 67 chr6 2594441 2594635 -179820607 + L1MC5 LINE L1 7736 7924 -37 261 324 0 38 chr6 2594940 2595045 -179820197 + CT-rich Low_complexity Low_complexity 5 105 0 781 358 154 2 chr6 2595433 2595899 -179819343 + L3 LINE CR1 703 1239 -338 901 256 87 73 chr6 2596469 2596918 -179818324 + L1MDb LINE L1 782 1236 -5173 399 234 78 0 chr6 2596919 2597060 -179818182 + MER63 DNA MER1_type 910 1061 0 560 173 105 65 chr6 2599060 2599278 -179815964 + MER106B DNA MER1_type 10 1059 0 1814 144 47 3 chr6 2599433 2599732 -179815510 - AluSx SINE Alu 0 312 1 180 250 0 0 chr6 2600951 2600991 -179814251 + L2 LINE L2 3153 3192 -80 2392 65 0 0 chr6 2601019 2601313 -179813929 + AluY SINE Alu 1 294 -17 388 35 0 188 chr6 2601336 2601421 -179813821 - MADE1 DNA Mariner 0 80 12 889 250 100 109 chr6 2601799 2602232 -179813010 + MER110 LTR ERV1 80 484 -3 539 41 27 0 chr6 2602352 2602425 -179812817 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr6 2602439 2602460 -179812782 + AT_rich Low_complexity Low_complexity 1 21 0 1651 167 32 3 chr6 2602471 2602753 -179812489 + AluJb SINE Alu 1 290 -22 4721 148 14 3 chr6 2602833 2603609 -179811633 - L1MA7 LINE L1 0 6291 5507 998 186 5 0 chr6 2604322 2604510 -179810732 + MER53 DNA DNA 1 189 0 267 329 0 0 chr6 2605952 2606025 -179809217 - MIR3 SINE MIR -17 191 119 562 279 129 49 chr6 2608044 2608470 -179806772 - L2 LINE L2 0 3272 2813 464 135 0 0 chr6 2609022 2609096 -179806146 - L1MB8 LINE L1 -11 6167 6094 2110 106 7 3 chr6 2609131 2609424 -179805818 - AluSx SINE Alu -18 294 1 4362 178 21 22 chr6 2609426 2610398 -179804844 - L1MB4 LINE L1 -42 6138 5170 942 228 61 58 chr6 2611191 2611603 -179803639 - L1MC5 LINE L1 -30 7931 7519 26 0 0 0 chr6 2612305 2612331 -179802911 + AT_rich Low_complexity Low_complexity 1 26 0 1735 173 38 20 chr6 2613078 2613425 -179801817 - L1MC1 LINE L1 0 6333 5981 1243 157 175 92 chr6 2613427 2613591 -179801651 - LTR54B LTR ERV1 -2 496 347 2231 97 7 0 chr6 2613591 2613899 -179801343 - AluSq SINE Alu -3 310 1 1243 157 175 92 chr6 2613899 2614192 -179801050 - LTR54B LTR ERV1 -151 347 1 213 39 0 0 chr6 2614419 2614445 -179800797 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 2614604 2614626 -179800616 + AT_rich Low_complexity Low_complexity 1 22 0 221 116 0 23 chr6 2615012 2615055 -179800187 + (GGAGAA)n Simple_repeat Simple_repeat 1 42 0 344 309 73 0 chr6 2616226 2616362 -179798880 + MER117 DNA MER1_type 4 149 -48 1744 100 61 0 chr6 2617949 2618210 -179797032 + AluSg SINE Alu 1 277 -33 198 0 0 0 chr6 2618212 2618234 -179797008 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 564 286 128 30 chr6 2619392 2619797 -179795445 + LTR16B LTR ERVL 20 464 0 2081 109 0 3 chr6 2620097 2620391 -179794851 - AluSc SINE Alu -16 293 1 310 268 116 27 chr6 2620739 2620851 -179794391 - MIR SINE MIR -37 225 104 1900 99 70 0 chr6 2621574 2621858 -179793384 - AluSx SINE Alu -8 304 1 2251 80 3 0 chr6 2622140 2622429 -179792813 - AluSp SINE Alu -23 290 1 424 263 67 59 chr6 2622535 2622805 -179792437 - L1MC1 LINE L1 -2036 5772 5501 1991 202 74 41 chr6 2622997 2623536 -179791706 - MER74A LTR ERVL 0 558 2 363 199 22 33 chr6 2624634 2624815 -179790427 + GA-rich Low_complexity Low_complexity 1 179 0 748 254 33 8 chr6 2624918 2625158 -179790084 + MLT1C LTR MaLR 210 455 -12 1479 292 71 9 chr6 2625901 2626452 -179788790 + L1ME3A LINE L1 5545 6129 -41 279 347 76 0 chr6 2626828 2626972 -179788270 - LTR33 LTR ERVL -193 328 174 1838 141 0 7 chr6 2627413 2627710 -179787532 + AluJo SINE Alu 4 298 -14 2002 126 0 10 chr6 2628392 2628701 -179786541 + AluSc SINE Alu 1 306 -3 239 323 72 4 chr6 2631641 2631777 -179783465 + MIR SINE MIR 50 193 -32 444 309 33 0 chr6 2632859 2633011 -179782231 - MIR SINE MIR -58 204 48 920 196 42 8 chr6 2633026 2633311 -179781931 + MER58 DNA MER1_type 2 2407 -13 781 195 50 6 chr6 2633335 2633494 -179781748 - MER5A DNA MER1_type -22 167 2 4925 107 74 39 chr6 2635132 2635455 -179779787 - LTR12 LTR ERV1 0 826 516 1472 117 4 9 chr6 2635455 2635686 -179779556 + AluY SINE Alu 81 310 -1 4925 107 74 39 chr6 2635686 2636160 -179779082 - LTR12 LTR ERV1 -310 516 1 2070 118 7 0 chr6 2636395 2636700 -179778542 + AluSx SINE Alu 1 307 -5 340 303 22 0 chr6 2637192 2637281 -179777961 - MIR3 SINE MIR -21 187 97 1749 203 68 6 chr6 2637343 2637825 -179777417 - MER69 DNA AcHobo -2 2524 2010 893 261 89 7 chr6 2637823 2638103 -179777139 - MER69 DNA AcHobo -658 568 266 * 439 297 134 25 chr6 2638562 2638882 -179776360 + L1MEd LINE L1 807 1161 -4958 3450 182 37 17 chr6 2638903 2639550 -179775692 - MER21B LTR ERV1 -1 862 203 725 191 86 129 chr6 2639695 2639951 -179775291 - MER21B LTR ERV1 -618 245 1 2169 234 55 32 chr6 2639966 2640332 -179774910 - MER69 DNA AcHobo -127 2399 2043 2903 203 56 26 chr6 2640332 2641030 -179774212 + MER72 LTR ERV1 1 719 -3 2169 234 55 32 chr6 2641030 2641579 -179773663 - MER69 DNA AcHobo -483 2043 1451 1253 252 85 85 chr6 2641691 2642207 -179773035 - MER69 DNA AcHobo -707 519 4 531 251 95 45 chr6 2642296 2642475 -179772767 + Charlie2 DNA MER1_type 144 331 -2451 992 246 68 0 chr6 2642486 2642766 -179772476 + Charlie2 DNA MER1_type 1906 2204 -658 579 257 67 9 chr6 2642854 2643064 -179772178 + LTR37A LTR ERV1 46 267 -159 233 200 33 0 chr6 2643085 2643145 -179772097 + (TG)n Simple_repeat Simple_repeat 2 63 0 297 219 0 0 chr6 2644469 2644542 -179770700 + (CA)n Simple_repeat Simple_repeat 1 73 0 2155 109 33 3 chr6 2644736 2645039 -179770203 - AluSx SINE Alu 0 312 1 670 285 45 5 chr6 2645140 2645340 -179769902 + MER63A DNA MER1_type 2 209 -1 190 227 0 23 chr6 2645721 2645765 -179769477 - L3b LINE CR1 -13 1570 1528 255 268 130 71 chr6 2645967 2646236 -179769006 - MER20B DNA MER1_type -209 574 290 4154 264 39 37 chr6 2646348 2647451 -179767791 + L1M4 LINE L1 2922 4032 -2114 1800 135 8 0 chr6 2647451 2647717 -179767525 - AluSq SINE Alu -45 268 1 4154 264 39 37 chr6 2647717 2648262 -179766980 + L1M4 LINE L1 4032 4574 -1572 231 211 105 0 chr6 2648337 2648394 -179766848 + MLT1D LTR MaLR 28 90 -415 1063 104 0 0 chr6 2648395 2648530 -179766712 + AluSq/x SINE Alu 1 135 -177 7236 162 21 41 chr6 2648530 2649931 -179765311 + L1MC3 LINE L1 6411 7784 -1 839 56 39 39 chr6 2650093 2650273 -179764969 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2045 163 115 46 chr6 2650689 2651210 -179764032 + LTR31 LTR ERV1 60 616 -3 1057 244 238 18 chr6 2651401 2651959 -179763283 - L2 LINE L2 -752 2562 1882 465 246 109 58 chr6 2652294 2652623 -179762619 - L1ME4a LINE L1 -6 6115 5770 565 293 63 10 chr6 2652881 2653086 -179762156 + MIR SINE MIR 5 220 -42 228 67 0 0 chr6 2653137 2653167 -179762075 + (TC)n Simple_repeat Simple_repeat 1 30 0 249 57 0 0 chr6 2653172 2653207 -179762035 + (CA)n Simple_repeat Simple_repeat 1 35 0 1772 180 31 0 chr6 2653207 2653495 -179761747 - AluJb SINE Alu -15 297 1 1964 173 17 0 chr6 2654236 2654588 -179760654 + MLT1B LTR MaLR 9 366 -24 4054 164 37 8 chr6 2654669 2655371 -179759871 + MER72 LTR ERV1 1 722 0 724 219 77 20 chr6 2655781 2655896 -179759346 + MER3 DNA MER1_type 3 135 -74 2309 144 25 0 chr6 2655896 2656251 -179758991 - THE1B LTR MaLR 0 364 1 724 219 77 20 chr6 2656251 2656331 -179758911 + MER3 DNA MER1_type 135 209 0 2279 117 0 0 chr6 2656942 2657251 -179757991 + AluSx SINE Alu 1 309 -3 337 168 262 40 chr6 2657285 2657434 -179757808 - MER53 DNA DNA -3 186 5 223 295 64 0 chr6 2657721 2657799 -179757443 + L2 LINE L2 3196 3278 -35 2520 198 30 85 chr6 2659614 2660345 -179754897 + LTR8 LTR ERV1 1 691 0 237 314 38 60 chr6 2660390 2660575 -179754667 + L2 LINE L2 2926 3106 -166 219 330 0 0 chr6 2660641 2660729 -179754513 + (CATA)n Simple_repeat Simple_repeat 1 88 0 189 189 0 0 chr6 2660792 2660829 -179754413 + L2 LINE L2 3274 3310 -3 333 205 219 53 chr6 2662215 2662366 -179752876 + MER5A DNA MER1_type 14 189 0 2183 111 0 0 chr6 2662858 2663146 -179752096 + AluSx SINE Alu 5 292 -20 187 347 32 11 chr6 2663328 2663423 -179751819 + L2 LINE L2 3208 3304 -9 685 211 0 0 chr6 2663865 2664006 -179751236 - FLAM_A SINE Alu 0 144 4 1104 136 65 5 chr6 2664170 2664354 -179750888 - AluSg/x SINE Alu -4 308 114 869 81 37 17 chr6 2664486 2664719 -179750523 + (TCTA)n Simple_repeat Simple_repeat 1 416 0 2480 154 78 83 chr6 2665114 2665677 -179749565 + LTR31 LTR ERV1 60 619 0 231 119 24 24 chr6 2665681 2665723 -179749519 - MER63A DNA MER1_type -166 44 3 360 316 65 26 chr6 2665796 2665861 -179749381 + L2 LINE L2 2684 2745 -569 2021 122 40 3 chr6 2665861 2666157 -179749085 + AluSc SINE Alu 1 307 -2 360 316 65 26 chr6 2666157 2666246 -179748996 + L2 LINE L2 2745 2844 -470 392 194 14 0 chr6 2666351 2666423 -179748819 - MER81 DNA DNA -20 94 22 234 301 87 10 chr6 2666679 2666782 -179748460 + L2 LINE L2 3162 3272 0 291 229 97 69 chr6 2668543 2668718 -179746524 - MER117 DNA MER1_type -17 180 1 866 211 78 0 chr6 2670307 2670511 -179744731 - MER58A DNA MER1_type -4 220 1 376 262 170 7 chr6 2672955 2673096 -179742146 - MIR SINE MIR -11 251 88 306 313 21 0 chr6 2673353 2673449 -179741793 + (CA)n Simple_repeat Simple_repeat 1 98 0 740 191 59 0 chr6 2673763 2673899 -179741343 - FRAM SINE Alu -11 165 22 250 304 60 60 chr6 2674378 2674546 -179740696 + MER5B DNA MER1_type 4 171 -7 2016 120 0 24 chr6 2674557 2674848 -179740394 + AluSx SINE Alu 1 284 -28 342 0 0 0 chr6 2675494 2675532 -179739710 + (A)n Simple_repeat Simple_repeat 1 38 0 2268 90 7 3 chr6 2677123 2677413 -179737829 - AluSg SINE Alu -19 291 1 392 220 22 0 chr6 2677930 2678021 -179737221 + L1ME4a LINE L1 5636 5728 -393 250 297 152 51 chr6 2678077 2678232 -179737010 + L1ME4a LINE L1 5819 5957 -164 1878 134 43 7 chr6 2678232 2678531 -179736711 + AluSq SINE Alu 1 310 -3 250 297 152 51 chr6 2678531 2678631 -179736611 + L1ME4a LINE L1 5957 6100 -21 686 211 0 0 chr6 2678695 2678834 -179736408 + FLAM_A SINE Alu 4 142 0 248 316 31 10 chr6 2680114 2680212 -179735030 - L2 LINE L2 -201 3071 2972 300 53 0 0 chr6 2680428 2680466 -179734776 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 172 0 115 chr6 2680614 2680701 -179734541 - Tigger5 DNA MER2_type 0 2323 2247 277 129 233 5 chr6 2680702 2680816 -179734426 - Tigger5 DNA MER2_type -2130 193 1 41 48 0 0 chr6 2681200 2681262 -179733980 + AT_rich Low_complexity Low_complexity 1 62 0 1370 194 93 14 chr6 2681265 2681495 -179733747 + AluJo SINE Alu 1 258 -54 2042 152 123 5 chr6 2681495 2681876 -179733366 - MSTA LTR MaLR 0 428 3 1370 194 93 14 chr6 2681876 2681924 -179733318 + AluJo SINE Alu 258 301 -11 921 105 7 56 chr6 2681939 2682082 -179733160 + FRAM SINE Alu 10 145 -31 1563 156 9 83 chr6 2682563 2682890 -179732352 - AluJo SINE Alu -9 303 1 1696 102 9 0 chr6 2683461 2683687 -179731555 - AluSc SINE Alu -2 307 80 713 140 0 129 chr6 2683950 2683985 -179731257 - L1MB3 LINE L1 -15 6168 6130 880 204 0 6 chr6 2683985 2684142 -179731100 - FRAM SINE Alu -9 157 2 713 140 0 129 chr6 2684142 2684284 -179730958 - L1MB3 LINE L1 -53 6130 6014 354 243 32 32 chr6 2685808 2685936 -179729306 - MIR SINE MIR -55 153 43 225 235 0 42 chr6 2687050 2687216 -179728026 + C-rich Low_complexity Low_complexity 3 161 0 227 350 10 19 chr6 2687349 2687452 -179727790 - MIR SINE MIR -156 106 5 476 229 122 64 chr6 2687710 2688037 -179727205 + L1ME4a LINE L1 5770 6115 -6 836 287 130 5 chr6 2688372 2688780 -179726462 + L2 LINE L2 1882 2340 -974 318 50 0 0 chr6 2688786 2688826 -179726416 + (CA)n Simple_repeat Simple_repeat 1 40 0 370 115 0 0 chr6 2688839 2688891 -179726351 + MER58 DNA MER1_type 2357 2408 -12 2431 271 184 20 chr6 2689056 2690581 -179724661 - L2 LINE L2 0 3313 1530 254 208 292 10 chr6 2690581 2690677 -179724565 + MER34 LTR ERV1 1 123 -419 278 146 110 98 chr6 2690749 2690831 -179724411 + MER39 LTR ERV1 380 462 -245 1682 113 4 0 chr6 2690831 2691060 -179724182 + AluSg/x SINE Alu 66 295 -15 919 177 17 17 chr6 2691130 2691311 -179723931 - L1MB3 LINE L1 0 6183 6003 491 224 26 0 chr6 2692443 2692559 -179722683 - MIR SINE MIR 0 262 144 1309 187 85 40 chr6 2692590 2692916 -179722326 + L1MB7 LINE L1 5833 6174 -10 1131 256 155 5 chr6 2693339 2693764 -179721478 + LTR50 LTR ERVL 31 519 -276 1722 175 75 24 chr6 2693784 2694156 -179721086 + MLT1C LTR MaLR 3 393 -74 2880 155 41 2 chr6 2694192 2694336 -179720906 - L1MA9 LINE L1 0 6312 6175 306 0 0 0 chr6 2694336 2694370 -179720872 + (TG)n Simple_repeat Simple_repeat 2 35 0 2880 155 41 2 chr6 2694370 2694734 -179720508 - L1MA9 LINE L1 -137 6175 5784 331 121 0 52 chr6 2694743 2694801 -179720441 - Alu SINE Alu -2 300 246 418 219 0 10 chr6 2694801 2694897 -179720345 - L1 LINE L1 -1397 4749 4655 799 155 20 37 chr6 2695002 2695198 -179720044 + L1M2 LINE L1 5218 5418 -766 279 109 0 0 chr6 2695213 2695259 -179719983 + L1M2 LINE L1 5388 5433 -864 374 280 98 8 chr6 2695300 2695432 -179719810 - MIR SINE MIR -118 144 1 823 303 0 5 chr6 2695599 2695817 -179719425 - LTR16B LTR ERVL -214 250 34 1136 189 78 66 chr6 2695957 2696377 -179718865 + MLT2B1 LTR ERVL 1 414 0 554 311 51 26 chr6 2696717 2697073 -179718169 - HERV16 LTR ERVL -619 4563 4010 801 273 104 30 chr6 2697386 2698108 -179717134 - HERV16 LTR ERVL -1347 3649 3135 1331 298 74 32 chr6 2698195 2698759 -179716483 - HERV16 LTR ERVL -2059 2937 2417 239 333 11 0 chr6 2699773 2699863 -179715379 - MIR3 SINE MIR -3 205 115 278 138 108 0 chr6 2700083 2700148 -179715094 + MIR3 SINE MIR 135 206 -2 1818 255 82 41 chr6 2700654 2700976 -179714266 + L1MC4a LINE L1 5281 5588 -2220 2317 86 3 7 chr6 2700976 2701278 -179713964 + AluY SINE Alu 1 301 -10 1818 255 82 41 chr6 2701278 2701676 -179713566 + L1MC4a LINE L1 5588 6044 -1764 2030 134 82 26 chr6 2701676 2702027 -179713215 - L1PA16 LINE L1 -8 6158 5783 2101 150 0 0 chr6 2702027 2702334 -179712908 - AluSx SINE Alu -5 307 1 2030 134 82 26 chr6 2702334 2702362 -179712880 - L1PA16 LINE L1 -383 5783 5758 1818 255 82 41 chr6 2702362 2702490 -179712752 + L1MC4a LINE L1 6044 6165 -1643 489 237 183 6 chr6 2702785 2702954 -179712288 + L2 LINE L2 2611 2809 -505 343 239 186 9 chr6 2702990 2703103 -179712139 + LTR41 LTR ERVL 30 162 -611 203 357 0 0 chr6 2703498 2703568 -179711674 - L3 LINE CR1 -1302 275 206 335 312 88 58 chr6 2705030 2705428 -179709814 + L1M4 LINE L1 2431 2853 -3293 2272 124 0 0 chr6 2705428 2705734 -179709508 + AluSx SINE Alu 1 306 -6 335 312 88 58 chr6 2705734 2705905 -179709337 + L1M4 LINE L1 2853 3017 -3129 611 174 0 0 chr6 2706272 2706381 -179708861 + L1MA9 LINE L1 6204 6312 0 531 153 0 0 chr6 2709827 2709912 -179705330 - FLAM SINE Alu -19 124 40 2421 71 0 3 chr6 2711556 2711853 -179703389 + AluY SINE Alu 1 296 -15 245 216 80 23 chr6 2712081 2712169 -179703073 - MLT1L LTR MaLR -2 613 521 403 273 22 43 chr6 2712198 2712337 -179702905 - MLT1J LTR MaLR -150 361 226 726 203 52 123 chr6 2712981 2713281 -179701961 - L1ME2 LINE L1 -10 6154 5881 887 120 38 0 chr6 2713281 2713414 -179701828 - L1MA2 LINE L1 0 6304 6167 726 203 52 123 chr6 2713414 2713462 -179701780 - L1ME2 LINE L1 -283 5881 5831 2166 115 0 13 chr6 2715009 2715313 -179699929 - AluSx SINE Alu -12 300 1 630 269 42 0 chr6 2715621 2715788 -179699454 + MIR SINE MIR 41 214 -48 313 263 23 83 chr6 2717203 2717336 -179697906 + MIR SINE MIR 58 182 -80 1062 185 30 5 chr6 2718823 2719023 -179696219 - MER58B DNA MER1_type -8 333 129 23 33 0 0 chr6 2719301 2719331 -179695911 + AT_rich Low_complexity Low_complexity 1 30 0 277 269 9 56 chr6 2719561 2719669 -179695573 + LTR33 LTR ERVL 1 103 -418 1047 189 0 0 chr6 2720118 2720293 -179694949 - FAM SINE Alu 0 175 1 269 324 22 0 chr6 2720427 2720566 -179694676 - L1MDa LINE L1 -1945 4595 4454 417 262 72 51 chr6 2720583 2720820 -179694422 - L1MDa LINE L1 -2170 4370 4129 2405 87 3 0 chr6 2721973 2722271 -179692971 + AluSp SINE Alu 1 299 -14 7213 218 49 26 chr6 2722401 2725104 -179690138 - L1MDa LINE L1 -2710 3830 719 2454 83 3 0 chr6 2725104 2725406 -179689836 - AluSp SINE Alu -10 303 1 7213 218 49 26 chr6 2725406 2726125 -179689117 - L1MDa LINE L1 -5821 719 18 341 215 87 132 chr6 2726352 2726617 -179688625 - L1ME4a LINE L1 -246 5875 5623 984 169 7 0 chr6 2726847 2727001 -179688241 - FRAM SINE Alu -25 151 1 736 11 21 0 chr6 2727151 2727244 -179687998 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1189 208 186 12 chr6 2727748 2728162 -179687080 - LTR54B LTR ERV1 -10 488 3 194 241 181 0 chr6 2728937 2729053 -179686189 + L2 LINE L2 2251 2387 -927 505 287 5 37 chr6 2729753 2729941 -179685301 + MIR SINE MIR 78 259 -3 385 145 0 29 chr6 2731539 2731608 -179683634 - Tigger2 DNA MER2_type -1518 1200 1134 4713 129 93 13 chr6 2731632 2732385 -179682857 - L1MA5A LINE L1 -3 6294 5464 255 114 0 0 chr6 2732385 2732429 -179682813 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4713 129 93 13 chr6 2732429 2732528 -179682714 - L1MA5A LINE L1 -833 5464 5374 * 15846 192 57 10 chr6 2732522 2732903 -179682339 - L1PB1 LINE L1 -4 6863 6502 240 86 0 0 chr6 2732903 2732938 -179682304 + (CA)n Simple_repeat Simple_repeat 2 36 0 15846 192 57 10 chr6 2732938 2734315 -179680927 - L1PB1 LINE L1 -365 6502 5192 189 0 0 0 chr6 2734315 2734336 -179680906 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 15846 192 57 10 chr6 2734336 2739126 -179676116 - L1PB1 LINE L1 -1675 5192 6 2171 184 38 0 chr6 2739134 2739580 -179675662 - L1MA5A LINE L1 -752 5394 4932 30 0 0 0 chr6 2740505 2740535 -179674707 + AT_rich Low_complexity Low_complexity 1 30 0 340 257 23 17 chr6 2740603 2740778 -179674464 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 683 271 33 38 chr6 2740793 2741033 -179674209 + LTR16A LTR ERVL 54 292 -158 1113 314 58 12 chr6 2741514 2742030 -179673212 + HERV16 LTR ERVL 395 934 -4062 767 301 39 12 chr6 2742115 2742447 -179672795 + HERV16 LTR ERVL 1081 1421 -3575 2435 297 55 23 chr6 2742549 2742664 -179672578 + HERV16 LTR ERVL 1613 1723 -3781 2051 140 0 31 chr6 2742664 2742985 -179672257 + AluJo SINE Alu 1 311 -1 2125 111 0 0 chr6 2742987 2743276 -179671966 + AluSx SINE Alu 3 291 -21 2435 297 55 23 chr6 2743276 2744479 -179670763 + HERV16 LTR ERVL 1723 3008 -2496 1026 217 74 106 chr6 2744492 2745004 -179670238 - MLT1D LTR MaLR -1 504 5 451 313 116 52 chr6 2745070 2745649 -179669593 + HERV16 LTR ERVL 3163 3778 -1986 847 186 96 0 chr6 2745867 2746055 -179669187 - MER20 DNA MER1_type -13 206 1 191 244 100 67 chr6 2746360 2746450 -179668792 - L2 LINE L2 -1 3271 3179 545 193 88 64 chr6 2746453 2746531 -179668711 - MER45A DNA AcHobo -1403 178 103 2212 104 0 0 chr6 2746531 2746828 -179668414 + AluSx SINE Alu 11 307 -5 545 193 88 64 chr6 2746828 2746920 -179668322 - MER45A DNA AcHobo -1478 103 4 238 261 228 0 chr6 2747469 2747561 -179667681 + MIR SINE MIR 32 144 -64 396 0 0 0 chr6 2747730 2747774 -179667468 + (TG)n Simple_repeat Simple_repeat 1 44 0 1758 157 77 65 chr6 2748532 2748577 -179666665 - MLT2D LTR ERVL -3 411 368 198 0 0 0 chr6 2748577 2748599 -179666643 + (TC)n Simple_repeat Simple_repeat 2 23 0 1758 157 77 65 chr6 2748599 2748955 -179666287 - MLT2D LTR ERVL -46 368 5 410 232 172 0 chr6 2749333 2749484 -179665758 + MLT1I LTR MaLR 2 178 -231 1822 189 34 11 chr6 2749848 2750203 -179665039 + MLT1A1 LTR MaLR 1 363 -2 367 317 87 6 chr6 2750704 2750887 -179664355 + L1MC2 LINE L1 3917 4114 -2032 535 269 56 121 chr6 2751052 2751207 -179664035 + L1MC2 LINE L1 4340 4503 -1643 2160 113 0 0 chr6 2751207 2751509 -179663733 - AluSx SINE Alu -10 302 1 535 269 56 121 chr6 2751509 2751899 -179663343 + L1MC2 LINE L1 4503 4856 -1290 236 287 108 6 chr6 2751924 2752081 -179663161 + L1P LINE L1 4875 5047 -1099 831 143 0 0 chr6 2752753 2752886 -179662356 - AluSg/x SINE Alu -1 311 179 206 268 28 0 chr6 2752886 2752957 -179662285 - L2 LINE L2 -45 3227 3155 2457 50 0 0 chr6 2753113 2753413 -179661829 + AluY SINE Alu 1 300 -11 941 122 11 17 chr6 2754047 2754228 -179661014 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 385 187 0 37 chr6 2754271 2754378 -179660864 + GA-rich Low_complexity Low_complexity 2 104 0 686 298 67 76 chr6 2756737 2756970 -179658272 + L1MC2 LINE L1 5309 5537 -635 2031 103 0 0 chr6 2756970 2757243 -179657999 + AluSc SINE Alu 30 302 -7 686 298 67 76 chr6 2757243 2757369 -179657873 + L1MC2 LINE L1 5537 5663 -509 318 246 27 27 chr6 2757395 2757505 -179657737 - MLT1F1 LTR MaLR -434 133 24 661 156 14 7 chr6 2757505 2757646 -179657596 - L1MC3 LINE L1 -700 7085 6944 269 277 69 30 chr6 2757785 2757886 -179657356 - L2 LINE L2 -20 3293 3189 6274 123 66 7 chr6 2759088 2760173 -179655069 - L1MC1 LINE L1 -9 6324 5175 599 288 131 13 chr6 2760810 2760967 -179654275 - MIR SINE MIR -5 257 63 1848 153 0 23 chr6 2760967 2761275 -179653967 - AluJo SINE Alu -11 301 1 599 288 131 13 chr6 2761275 2761346 -179653896 - MIR SINE MIR -199 63 2 548 254 65 0 chr6 2761346 2761481 -179653761 + MIR SINE MIR 47 190 -72 380 161 0 62 chr6 2761617 2761698 -179653544 - MLT1D LTR MaLR 0 505 430 618 65 0 0 chr6 2761698 2761775 -179653467 - L1P2 LINE L1 -501 5653 5577 3190 42 8 0 chr6 2761775 2762156 -179653086 + L1PA7 LINE L1 5759 6143 -11 2016 230 11 45 chr6 2762184 2762653 -179652589 - MLT1D LTR MaLR -52 453 1 5089 110 7 1 chr6 2763099 2763829 -179651413 - L1PA14 LINE L1 -65 6096 5363 425 302 34 13 chr6 2764321 2764470 -179650772 - MIR3 SINE MIR -23 185 34 205 286 13 26 chr6 2764972 2765049 -179650193 + L2 LINE L2 3016 3091 -181 2188 107 3 0 chr6 2765061 2765360 -179649882 - AluSx SINE Alu -12 300 1 1971 172 16 44 chr6 2765495 2765879 -179649363 + MSTB LTR MaLR 54 426 0 415 278 190 19 chr6 2766383 2766588 -179648654 + MIR SINE MIR 13 252 -10 2180 180 31 5 chr6 2766855 2767272 -179647970 + L1MC2 LINE L1 5854 6281 -63 325 260 13 0 chr6 2767280 2767357 -179647885 - MLT1H1 LTR MaLR -468 87 10 186 133 0 0 chr6 2768631 2768661 -179646581 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1450 199 93 54 chr6 2769756 2770198 -179645044 + MLT1E3 LTR MaLR 104 562 -62 706 262 11 11 chr6 2770201 2770423 -179644819 + L1PB4 LINE L1 5950 6171 0 383 184 0 71 chr6 2770430 2770528 -179644714 + MLT1E LTR MaLR 503 593 0 708 135 6 140 chr6 2770852 2770941 -179644301 - MER96B DNA MER1_type? -4 413 314 1058 141 11 6 chr6 2770941 2771118 -179644124 - L1MB3 LINE L1 -1 6182 6005 708 135 6 140 chr6 2771118 2771139 -179644103 - MER96B DNA MER1_type? -103 314 292 2209 195 39 9 chr6 2771139 2771600 -179643642 - L1MC1 LINE L1 -8 6325 5851 708 135 6 140 chr6 2771600 2771666 -179643576 - MER96B DNA MER1_type? -125 292 260 183 80 0 0 chr6 2774664 2774689 -179640553 + (T)n Simple_repeat Simple_repeat 1 25 0 592 155 26 0 chr6 2776149 2776265 -179638977 - L1MB3 LINE L1 -1 6182 6064 959 178 53 14 chr6 2777240 2777448 -179637794 + MER20 DNA MER1_type 1 216 -3 2179 108 0 13 chr6 2777977 2778284 -179636958 - AluSx SINE Alu -9 303 1 282 288 14 0 chr6 2778441 2778514 -179636728 + MER112 DNA MER1_type 179 252 -8 1658 196 46 0 chr6 2778565 2778912 -179636330 + MLT2D LTR ERVL 1 363 -51 409 163 150 94 chr6 2779000 2779160 -179636082 + MLT1C LTR MaLR 1 169 -298 350 223 122 21 chr6 2779440 2779609 -179635633 + MLT1I LTR MaLR 266 409 0 435 322 71 43 chr6 2780966 2781177 -179634065 + MIR SINE MIR 20 236 -26 281 262 117 55 chr6 2782662 2782807 -179632435 + MIR SINE MIR 33 186 -76 2029 73 0 18 chr6 2784464 2784736 -179630506 - AluSq SINE Alu -13 300 34 2852 218 64 13 chr6 2785279 2785980 -179629262 - L1MB3 LINE L1 -4 6179 5443 470 314 5 19 chr6 2786279 2786486 -179628756 + SST1 Satellite centromeric 1349 1552 -11 369 75 0 0 chr6 2786512 2786565 -179628677 + (TG)n Simple_repeat Simple_repeat 1 53 0 2176 107 0 0 chr6 2786731 2787022 -179628220 + AluSc SINE Alu 1 291 -18 1064 282 40 26 chr6 2787561 2788015 -179627227 + SST1 Satellite centromeric 1 460 -1103 725 318 51 11 chr6 2788074 2788448 -179626794 + SST1 Satellite centromeric 1161 1549 -14 303 130 0 0 chr6 2788480 2788534 -179626708 + (TG)n Simple_repeat Simple_repeat 1 54 0 317 238 107 89 chr6 2789866 2790034 -179625208 + MER5B DNA MER1_type 1 171 -7 343 266 12 0 chr6 2790459 2790632 -179624610 + (CA)n Simple_repeat Simple_repeat 2 176 0 228 207 175 35 chr6 2791595 2791736 -179623506 + MIR SINE MIR 16 177 -60 1675 172 14 0 chr6 2791757 2792054 -179623188 + AluJo SINE Alu 1 301 -11 2509 222 94 43 chr6 2792092 2792844 -179622398 + L1ME1 LINE L1 5371 6161 -5 608 323 66 10 chr6 2793555 2793843 -179621399 - LTR16C LTR ERVL -8 483 180 644 164 6 18 chr6 2795324 2795495 -179619747 + (TG)n Simple_repeat Simple_repeat 2 170 0 275 237 0 22 chr6 2795510 2795645 -179619597 + (TG)n Simple_repeat Simple_repeat 2 133 0 341 227 0 21 chr6 2795667 2795764 -179619478 + (TG)n Simple_repeat Simple_repeat 2 96 0 271 327 52 47 chr6 2796102 2796313 -179618929 + MIR SINE MIR 50 261 -1 6533 244 60 32 chr6 2796651 2798754 -179616488 + L1ME1 LINE L1 2980 5200 -966 2052 124 0 3 chr6 2798754 2799063 -179616179 + AluSx SINE Alu 1 308 0 6533 244 60 32 chr6 2799063 2800054 -179615188 + L1ME1 LINE L1 5200 6162 -4 2170 110 7 10 chr6 2800195 2800495 -179614747 + AluSg SINE Alu 1 299 -11 479 191 167 12 chr6 2800495 2800663 -179614579 + MER5C DNA MER1_type 131 324 0 5780 228 59 43 chr6 2800784 2801990 -179613252 + L1M4 LINE L1 14 1200 -5444 2294 60 6 73 chr6 2801990 2802304 -179612938 + AluY SINE Alu 1 293 -18 5780 228 59 43 chr6 2802304 2803393 -179611849 + L1M4 LINE L1 1200 2271 -4373 2318 119 0 0 chr6 2803393 2803696 -179611546 + AluSx SINE Alu 1 303 -9 5780 228 59 43 chr6 2803696 2804702 -179610540 + L1M4 LINE L1 2271 3515 -3129 408 366 40 13 chr6 2804714 2805162 -179610080 - MARNA DNA Mariner -75 511 52 26 30 0 0 chr6 2806232 2806265 -179608977 + AT_rich Low_complexity Low_complexity 1 33 0 271 325 25 0 chr6 2807028 2807148 -179608094 + MLT1-int LTR MaLR 21 143 -1228 583 285 27 16 chr6 2807183 2807439 -179607803 + MLT1-int LTR MaLR 292 550 -821 278 338 73 7 chr6 2807667 2807818 -179607424 + MLT1-int LTR MaLR 692 852 -519 1233 214 126 23 chr6 2808056 2808365 -179606877 + MLT1F LTR MaLR 13 353 -189 24 32 0 0 chr6 2809541 2809572 -179605670 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 59 0 chr6 2809644 2809695 -179605547 + (TAA)n Simple_repeat Simple_repeat 2 55 0 344 231 214 0 chr6 2809866 2809983 -179605259 + MER5A DNA MER1_type 41 182 -7 374 312 139 5 chr6 2809996 2810198 -179605044 + MIR SINE MIR 16 244 -18 1922 112 45 159 chr6 2812134 2812617 -179602625 + MSTA LTR MaLR 1 428 0 230 0 33 0 chr6 2814927 2814957 -179600285 + (TG)n Simple_repeat Simple_repeat 2 32 0 1721 81 14 0 chr6 2815340 2815563 -179599679 + AluSc SINE Alu 76 301 -8 21 36 0 0 chr6 2816639 2816667 -179598575 + AT_rich Low_complexity Low_complexity 1 28 0 472 97 14 0 chr6 2817125 2817197 -179598045 - L1PA16 LINE L1 0 6166 6094 183 42 0 0 chr6 2817767 2817791 -179597451 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1924 151 10 10 chr6 2817803 2818115 -179597127 + AluJo SINE Alu 1 312 0 2309 91 0 0 chr6 2819099 2819410 -179595832 + AluSx SINE Alu 1 311 0 184 313 23 70 chr6 2819828 2819956 -179595286 + MIR SINE MIR 65 186 -76 253 279 96 0 chr6 2821854 2821958 -179593284 + MIR SINE MIR 111 224 -38 22 56 0 0 chr6 2821993 2822029 -179593213 + AT_rich Low_complexity Low_complexity 1 36 0 261 353 116 27 chr6 2822758 2823197 -179592045 - L2 LINE L2 -649 2665 2188 2032 135 3 3 chr6 2823607 2823895 -179591347 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr6 2824464 2824488 -179590754 + AT_rich Low_complexity Low_complexity 1 24 0 2259 119 0 3 chr6 2824826 2825136 -179590106 + AluSg SINE Alu 1 309 -1 197 236 100 70 chr6 2825715 2825889 -179589353 + MIR SINE MIR 29 210 -52 280 325 145 0 chr6 2826190 2826307 -179588935 + L2 LINE L2 3134 3267 -5 195 339 167 11 chr6 2826698 2826884 -179588358 + MIR SINE MIR 43 257 -5 240 211 42 28 chr6 2826919 2826990 -179588252 - MIR3 SINE MIR -23 185 114 2358 69 24 0 chr6 2827727 2828017 -179587225 - AluSc SINE Alu -12 297 1 271 218 56 42 chr6 2830575 2830717 -179584525 - L1ME4a LINE L1 -3 6118 5975 387 0 0 0 chr6 2832407 2832450 -179582792 + (TG)n Simple_repeat Simple_repeat 2 44 0 2144 108 7 0 chr6 2832450 2832733 -179582509 - AluSx SINE Alu -27 285 1 3011 159 42 2 chr6 2832935 2833462 -179581780 - MER44D DNA MER2_type 0 605 3 1256 218 73 30 chr6 2833545 2833875 -179581367 - MER2 DNA MER2_type 0 344 1 539 219 19 129 chr6 2834730 2834804 -179580438 + MER5A DNA MER1_type 1 82 -107 2183 97 26 23 chr6 2834804 2835113 -179580129 + AluSg SINE Alu 1 310 0 539 219 19 129 chr6 2835113 2835248 -179579994 + MER5A DNA MER1_type 82 187 -2 385 282 33 6 chr6 2835735 2835901 -179579341 + ERVL LTR ERVL 2379 2553 -2934 682 304 53 30 chr6 2836114 2836417 -179578825 + ERVL LTR ERVL 2805 3114 -2540 2468 87 3 0 chr6 2837063 2837374 -179577868 - AluSx SINE Alu 0 312 1 221 300 0 0 chr6 2838822 2838882 -179576360 - L2 LINE L2 -3 3310 3251 2581 42 3 7 chr6 2839839 2840145 -179575097 - AluY SINE Alu -6 305 1 896 182 67 34 chr6 2841918 2842127 -179573115 - MER20 DNA MER1_type -2 217 2 2271 109 0 3 chr6 2842772 2843074 -179572168 - AluSq SINE Alu -12 301 1 192 246 35 0 chr6 2843149 2843206 -179572036 + L3 LINE CR1 667 725 -852 180 0 0 0 chr6 2843477 2843497 -179571745 + (ATG)n Simple_repeat Simple_repeat 1 20 0 1275 93 0 0 chr6 2843507 2843713 -179571529 + (TGG)n Simple_repeat Simple_repeat 1 206 0 223 121 35 35 chr6 2843816 2843874 -179571368 + (GTGTG)n Simple_repeat Simple_repeat 2 59 0 681 177 0 0 chr6 2843875 2844022 -179571220 + (TGG)n Simple_repeat Simple_repeat 1 147 0 541 253 164 9 chr6 2844022 2844247 -179570995 - MIR SINE MIR -2 260 1 244 323 31 0 chr6 2845568 2845664 -179569578 + Charlie7 DNA MER1_type 5 103 -2509 1355 201 118 54 chr6 2845668 2846017 -179569225 + MLT1A1 LTR MaLR 4 365 0 21 36 0 0 chr6 2846098 2846126 -179569116 + AT_rich Low_complexity Low_complexity 1 28 0 2120 114 4 0 chr6 2846130 2846445 -179568797 + AluSg SINE Alu 1 316 0 290 200 111 11 chr6 2846462 2846552 -179568690 + Charlie7 DNA MER1_type 2514 2612 0 22 35 0 0 chr6 2848558 2848587 -179566655 + AT_rich Low_complexity Low_complexity 1 29 0 2256 101 0 25 chr6 2848630 2848947 -179566295 - AluSg1 SINE Alu 0 309 1 346 261 23 46 chr6 2849617 2849747 -179565495 - MER5B DNA MER1_type -30 148 22 295 272 154 49 chr6 2851053 2851215 -179564027 + MER5A DNA MER1_type 11 189 0 1491 177 12 50 chr6 2851825 2852147 -179563095 + L1MA7 LINE L1 5981 6290 -1 27 49 0 0 chr6 2852641 2852682 -179562560 + AT_rich Low_complexity Low_complexity 1 41 0 366 298 32 16 chr6 2852829 2852953 -179562289 - MER5A DNA MER1_type -57 132 7 2367 70 0 0 chr6 2853013 2853300 -179561942 - AluSc SINE Alu -3 306 20 201 256 0 0 chr6 2855004 2855047 -179560195 + L3b LINE CR1 1289 1331 -252 906 150 0 6 chr6 2855730 2855890 -179559352 + L1MA10 LINE L1 6169 6327 -7 22 0 0 0 chr6 2857460 2857482 -179557760 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr6 2859299 2859354 -179555888 + AT_rich Low_complexity Low_complexity 1 55 0 2822 145 43 27 chr6 2859637 2860126 -179555116 + LOR1a LTR ERV1 1 497 0 383 296 173 14 chr6 2860502 2860722 -179554520 - L3 LINE CR1 -991 586 332 348 287 75 37 chr6 2862229 2862417 -179552825 + MIR SINE MIR 18 212 -50 2217 108 3 13 chr6 2862441 2862755 -179552487 + AluSp SINE Alu 3 313 0 1024 191 32 0 chr6 2863278 2863467 -179551775 + L1MB3 LINE L1 5418 5612 -559 354 169 56 134 chr6 2863513 2863655 -179551587 + MER41A LTR ERV1 174 304 -250 * 948 158 161 110 chr6 2863631 2863923 -179551319 + MER66A LTR ERV1 171 477 -1 3265 124 41 30 chr6 2863923 2864333 -179550909 + L1MB3 LINE L1 5607 6026 -157 2171 110 17 0 chr6 2864333 2864625 -179550617 + AluSp SINE Alu 1 297 -16 3265 124 41 30 chr6 2864625 2864778 -179550464 + L1MB3 LINE L1 6026 6176 -7 849 224 47 0 chr6 2866047 2866239 -179549003 + MIR SINE MIR 47 247 -15 256 276 90 35 chr6 2866312 2866457 -179548785 - L2 LINE L2 -210 3062 2910 353 293 102 0 chr6 2866986 2867143 -179548099 - MIR SINE MIR -70 192 20 2429 91 7 0 chr6 2867249 2867558 -179547684 + AluSp SINE Alu 1 311 -2 234 203 17 17 chr6 2867681 2867740 -179547502 + MLT1L LTR MaLR 11 69 -546 310 274 85 9 chr6 2867844 2867950 -179547292 + MLT1J LTR MaLR 224 337 -174 1123 101 0 0 chr6 2869206 2869345 -179545897 + AluSq/x SINE Alu 1 139 -174 380 250 125 0 chr6 2869345 2869441 -179545801 - MER5B DNA MER1_type -70 108 1 2432 71 0 3 chr6 2869473 2869770 -179545472 + AluSc SINE Alu 1 296 -13 1396 225 84 28 chr6 2869772 2869858 -179545384 + HAL1 LINE L1 887 967 -1540 533 114 13 0 chr6 2869858 2869937 -179545305 - MADE1 DNA Mariner 0 80 1 1396 225 84 28 chr6 2869937 2870231 -179545011 + HAL1 LINE L1 967 1305 -1202 2250 103 0 0 chr6 2870231 2870543 -179544699 + AluSg SINE Alu 1 312 0 1396 225 84 28 chr6 2870543 2870662 -179544580 + HAL1 LINE L1 1305 1416 -1091 481 216 22 36 chr6 2871090 2871229 -179544013 + HAL1 LINE L1 1405 1541 -966 2067 253 50 43 chr6 2871235 2871863 -179543379 + HAL1 LINE L1 1597 2234 -273 396 0 0 0 chr6 2871863 2871907 -179543335 + (TG)n Simple_repeat Simple_repeat 2 45 0 2067 253 50 43 chr6 2871907 2872183 -179543059 + HAL1 LINE L1 2234 2507 0 1872 159 3 7 chr6 2872362 2872663 -179542579 + AluJb SINE Alu 3 302 -10 243 0 0 0 chr6 2873210 2873237 -179542005 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2193 111 0 3 chr6 2873240 2873528 -179541714 - AluSx SINE Alu -25 287 1 2018 110 0 0 chr6 2874252 2874516 -179540726 + AluSx SINE Alu 34 297 -15 1635 186 0 54 chr6 2874526 2874843 -179540399 + AluJo SINE Alu 1 300 -12 905 134 12 0 chr6 2874852 2875023 -179540219 + GA-rich Low_complexity Low_complexity 4 176 0 2564 59 3 0 chr6 2875956 2876260 -179538982 - AluSq SINE Alu -6 307 3 2354 70 0 3 chr6 2877033 2877318 -179537924 + AluSc SINE Alu 17 300 -9 422 269 39 0 chr6 2877360 2877490 -179537752 - MIR SINE MIR -70 192 58 240 338 84 38 chr6 2880841 2881054 -179534188 + L2 LINE L2 2985 3207 -65 181 303 66 25 chr6 2881567 2881689 -179533553 - MIR SINE MIR -5 257 131 229 297 43 29 chr6 2883140 2883278 -179531964 - MER5A DNA MER1_type -24 165 26 240 240 30 0 chr6 2883950 2884050 -179531192 + (TA)n Simple_repeat Simple_repeat 2 104 0 287 218 69 20 chr6 2884228 2884329 -179530913 - MER5A DNA MER1_type -80 109 4 429 294 69 25 chr6 2885241 2885401 -179529841 - MIR SINE MIR -70 192 26 1194 107 0 0 chr6 2885618 2885777 -179529465 - AluSg/x SINE Alu -25 285 127 2278 76 0 0 chr6 2886401 2886689 -179528553 + AluSc SINE Alu 19 306 -3 226 283 133 26 chr6 2887338 2887451 -179527791 - MIR SINE MIR -97 165 41 1037 157 6 0 chr6 2888170 2888336 -179526906 + L1MC1 LINE L1 6055 6221 -112 276 299 11 0 chr6 2888435 2888522 -179526720 + MIR SINE MIR 78 165 -97 424 143 0 0 chr6 2888523 2888586 -179526656 + AluS SINE Alu 2 64 -248 256 200 210 10 chr6 2889449 2889549 -179525693 + MIR SINE MIR 50 169 -93 266 265 61 41 chr6 2889894 2890041 -179525201 + LTR16C LTR ERVL 332 481 -10 226 229 96 12 chr6 2890457 2890540 -179524702 - MER113 DNA MER1_type? -427 94 5 4738 28 0 0 chr6 2891691 2892231 -179523011 + L1PA3 LINE L1 5615 6154 -1 626 176 71 80 chr6 2892300 2892538 -179522704 + MER106A DNA MER1_type 1 236 0 1869 153 7 7 chr6 2894993 2895300 -179519942 + AluJb SINE Alu 1 307 -5 2340 92 0 49 chr6 2895321 2895647 -179519595 + AluSg SINE Alu 1 310 0 1761 149 3 34 chr6 2896698 2896993 -179518249 - AluJo SINE Alu -14 298 13 211 333 0 12 chr6 2897832 2897913 -179517329 - MIR SINE MIR -8 254 175 1238 174 26 15 chr6 2901546 2901810 -179513432 - L1MC3 LINE L1 0 7785 7519 777 259 117 0 chr6 2901810 2902084 -179513158 - L2 LINE L2 -793 2521 2216 3408 192 57 56 chr6 2902834 2903229 -179512013 + L1MB8 LINE L1 5109 5502 -676 976 111 0 15 chr6 2903229 2903364 -179511878 + FLAM_C SINE Alu 1 133 0 3408 192 57 56 chr6 2903364 2904034 -179511208 + L1MB8 LINE L1 5502 6178 0 550 243 186 0 chr6 2904624 2904801 -179510441 - L1MC4 LINE L1 -36 8006 7797 1163 157 17 0 chr6 2904885 2905086 -179510156 - AluJb SINE Alu 0 307 104 2682 240 101 13 chr6 2905088 2906023 -179509219 - L1MC4 LINE L1 -287 7602 6509 390 289 146 50 chr6 2906693 2906932 -179508310 + L1ME LINE L1 5491 5752 -369 417 264 96 34 chr6 2907233 2907411 -179507831 + MIR SINE MIR 8 196 -66 256 208 58 19 chr6 2907684 2907838 -179507404 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr6 2907861 2907883 -179507359 + AT_rich Low_complexity Low_complexity 1 22 0 387 270 57 28 chr6 2908027 2908275 -179506967 - L1ME3A LINE L1 -205 5965 5711 388 258 110 53 chr6 2908315 2908462 -179506780 - L1ME3A LINE L1 -604 5558 5421 1532 183 48 14 chr6 2908462 2908757 -179506485 - AluJo SINE Alu -7 305 1 388 258 110 53 chr6 2908757 2908873 -179506369 - L1ME3A LINE L1 -741 5421 5280 304 289 21 14 chr6 2908900 2909042 -179506200 - L1ME3A LINE L1 -897 5249 5107 678 145 8 0 chr6 2909389 2909506 -179505736 - MER2 DNA MER2_type -135 210 93 710 107 0 0 chr6 2909514 2909617 -179505625 - MER2 DNA MER2_type -135 210 108 670 238 219 66 chr6 2909630 2909995 -179505247 - MER21B LTR ERV1 -425 438 18 318 322 35 17 chr6 2910015 2910189 -179505053 + L1M4 LINE L1 4248 4424 -1722 531 188 147 12 chr6 2910890 2911071 -179504171 - MIR SINE MIR -21 241 40 1844 129 7 7 chr6 2911264 2911542 -179503700 - AluSc SINE Alu -13 296 19 2855 203 130 32 chr6 2911993 2913182 -179502060 - pTR5 LTR ERV1 -22 1523 6 1924 92 73 7 chr6 2913215 2913487 -179501755 + AluSp SINE Alu 1 290 -23 599 170 30 15 chr6 2913621 2913756 -179501486 + FRAM SINE Alu 1 136 -40 23 33 0 0 chr6 2914533 2914563 -179500679 + GC_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 2914936 2914973 -179500269 + GC_rich Low_complexity Low_complexity 1 37 0 23 101 0 0 chr6 2915101 2915180 -179500062 + GC_rich Low_complexity Low_complexity 1 79 0 26 0 0 0 chr6 2915397 2915423 -179499819 + GC_rich Low_complexity Low_complexity 1 26 0 206 263 0 0 chr6 2915447 2915523 -179499719 + G-rich Low_complexity Low_complexity 30 105 0 21 36 0 0 chr6 2915582 2915610 -179499632 + GC_rich Low_complexity Low_complexity 1 28 0 186 319 18 26 chr6 2916509 2916622 -179498620 + L3 LINE CR1 1123 1234 -343 25 31 0 0 chr6 2918756 2918788 -179496454 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 2918813 2918838 -179496404 + AT_rich Low_complexity Low_complexity 1 25 0 1192 142 78 23 chr6 2920896 2921115 -179494127 + MER46A DNA MER2_type 1 231 -5 181 207 17 86 chr6 2921498 2921556 -179493686 + MER5A DNA MER1_type 130 183 -6 333 222 154 8 chr6 2921724 2921841 -179493401 + L2 LINE L2 3139 3272 0 22 0 0 0 chr6 2923492 2923514 -179491728 + AT_rich Low_complexity Low_complexity 1 22 0 1004 211 40 103 chr6 2923632 2924031 -179491211 - MLT1B LTR MaLR -16 374 1 713 269 20 10 chr6 2924273 2924474 -179490768 - MIR SINE MIR -6 256 54 22 80 0 0 chr6 2925343 2925393 -179489849 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr6 2926251 2926283 -179488959 + AT_rich Low_complexity Low_complexity 1 32 0 187 225 0 0 chr6 2927868 2927908 -179487334 - MIR SINE MIR -145 117 78 198 274 60 36 chr6 2928080 2928164 -179487078 + MIR3 SINE MIR 116 201 -7 213 280 11 32 chr6 2930261 2930354 -179484888 - MIR SINE MIR -49 213 123 577 198 142 6 chr6 2931170 2931332 -179483910 - MIR SINE MIR -71 191 8 258 315 36 0 chr6 2935602 2935713 -179479529 - HAL1 LINE L1 -702 1805 1691 644 293 168 19 chr6 2935755 2936172 -179479070 - HAL1 LINE L1 -620 1887 1409 320 143 89 0 chr6 2936175 2936231 -179479011 - HAL1 LINE L1 -1144 1363 1303 2266 98 0 25 chr6 2936232 2936549 -179478693 - AluSx SINE Alu -3 309 1 834 277 126 16 chr6 2936549 2937131 -179478111 - L2 LINE L2 -10 3303 2651 251 356 40 0 chr6 2937156 2937305 -179477937 - HAL1 LINE L1 -1879 628 474 529 287 62 14 chr6 2937391 2937600 -179477642 - HAL1 LINE L1 -2278 229 11 2159 123 0 16 chr6 2937631 2937947 -179477295 - AluSx SINE Alu -1 311 1 2829 29 0 0 chr6 2937979 2938289 -179476953 + AluYb8 SINE Alu 1 310 -8 2180 118 0 0 chr6 2938956 2939244 -179475998 + AluSx SINE Alu 1 288 -24 195 42 0 0 chr6 2939248 2939272 -179475970 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 375 226 96 78 chr6 2939932 2940162 -179475080 - LTR33 LTR ERVL -169 352 119 200 209 0 0 chr6 2940587 2940630 -179474612 + L2 LINE L2 3224 3266 -6 393 215 0 93 chr6 2940877 2941049 -179474193 - L1ME4a LINE L1 -3 6118 5963 309 51 0 0 chr6 2941053 2941092 -179474150 + (TG)n Simple_repeat Simple_repeat 1 39 0 2421 91 0 0 chr6 2941300 2941597 -179473645 - AluSx SINE Alu -15 297 1 372 294 166 5 chr6 2941698 2941909 -179473333 + MIR SINE MIR 15 259 -3 280 347 67 0 chr6 2942222 2942372 -179472870 - MIR SINE MIR 0 262 103 688 208 116 29 chr6 2942442 2942615 -179472627 - MER5A DNA MER1_type 0 189 2 225 219 74 12 chr6 2942959 2943041 -179472201 + MER91 DNA MER1_type 105 196 0 258 187 37 44 chr6 2944153 2944234 -179471008 + MIR3 SINE MIR 101 168 -40 1865 106 0 0 chr6 2944252 2944526 -179470716 + AluSg SINE Alu 46 319 0 207 348 65 0 chr6 2944674 2944766 -179470476 + MIR3 SINE MIR 83 180 -28 257 253 145 24 chr6 2945565 2945731 -179469511 + MER5A DNA MER1_type 1 186 -3 2545 54 0 3 chr6 2945736 2946034 -179469208 + AluY SINE Alu 1 297 -14 761 65 9 0 chr6 2947198 2947306 -179467936 + (TCC)n Simple_repeat Simple_repeat 1 109 0 309 266 73 64 chr6 2948024 2948257 -179466985 + MLT1K LTR MaLR 351 585 -3 2365 107 0 0 chr6 2948422 2948732 -179466510 - AluSx SINE Alu -2 310 1 186 188 21 21 chr6 2949443 2949491 -179465751 - L3b LINE CR1 -8 1575 1528 2596 185 8 4 chr6 2949882 2950352 -179464890 - MER70A LTR ERVL 0 472 1 1776 185 49 3 chr6 2950358 2950854 -179464388 - MER70A-int LTR ERVL 0 5023 4469 28 0 0 0 chr6 2950854 2950882 -179464360 + AT_rich Low_complexity Low_complexity 1 28 0 3498 5 0 0 chr6 2950882 2951265 -179463977 - L1HS LINE L1 -3 6152 5770 14040 176 54 28 chr6 2951268 2952629 -179462613 - MER70A-int LTR ERVL -549 4474 3150 249 216 0 0 chr6 2952629 2952680 -179462562 + MER9 LTR ERVK 461 511 0 14040 176 54 28 chr6 2952680 2954049 -179461193 - MER70A-int LTR ERVL -1873 3150 1621 2245 160 76 10 chr6 2954049 2954343 -179460899 - MER70A-int LTR ERVL -3832 1191 918 1748 192 27 0 chr6 2954343 2954671 -179460571 - MER1B DNA MER1_type 0 337 1 2245 160 76 10 chr6 2954671 2955156 -179460086 - MER70A-int LTR ERVL -4105 918 467 372 22 0 0 chr6 2955156 2955201 -179460041 + (TG)n Simple_repeat Simple_repeat 2 46 0 2245 160 76 10 chr6 2955201 2955386 -179459856 - MER70A-int LTR ERVL -4556 467 1 954 144 19 91 chr6 2955386 2955554 -179459688 - MER70A LTR ERVL 0 472 320 4171 142 23 34 chr6 2955554 2956287 -179458955 + LTR8A LTR ERV1 1 725 -2 954 144 19 91 chr6 2956287 2956326 -179458916 - MER70A LTR ERVL -152 320 280 603 256 30 24 chr6 2956360 2956528 -179458714 + HAL1 LINE L1 539 707 -1800 272 272 25 12 chr6 2956536 2956617 -179458625 + HAL1 LINE L1 745 826 -1681 1096 253 80 26 chr6 2956654 2957041 -179458201 + HAL1 LINE L1 1404 1811 -696 461 189 27 18 chr6 2957198 2957309 -179457933 + HAL1 LINE L1 1690 1801 -706 3265 153 131 37 chr6 2957364 2957503 -179457739 + L1MA9 LINE L1 5483 5608 -704 1908 163 20 3 chr6 2957503 2957809 -179457433 + AluJo SINE Alu 1 311 -1 3265 153 131 37 chr6 2957809 2958423 -179456819 + L1MA9 LINE L1 5608 6307 -5 629 257 151 29 chr6 2958434 2958851 -179456391 + HAL1 LINE L1 1812 2279 -228 917 192 33 23 chr6 2960654 2960868 -179454374 - MER20 DNA MER1_type -3 216 1 234 295 0 0 chr6 2960875 2960936 -179454306 + (TA)n Simple_repeat Simple_repeat 2 62 0 780 208 36 24 chr6 2960951 2961119 -179454123 + MER6B DNA MER2_type 41 210 0 283 279 12 0 chr6 2961120 2961206 -179454036 + (TA)n Simple_repeat Simple_repeat 1 87 0 407 181 0 0 chr6 2961206 2961278 -179453964 + MER116 DNA Mariner 5 76 -4 218 250 136 34 chr6 2961466 2961554 -179453688 + MIR SINE MIR 137 233 -29 2444 103 0 0 chr6 2961796 2962107 -179453135 + AluSx SINE Alu 1 311 -1 749 221 12 0 chr6 2962131 2962144 -179453098 - L1MA10 LINE L1 -1 6333 6321 748 234 95 20 chr6 2962144 2962396 -179452846 - L1ME1 LINE L1 -5 6161 5891 2330 55 4 0 chr6 2962402 2962675 -179452567 - AluY SINE Alu -10 301 28 270 275 0 0 chr6 2962779 2962848 -179452394 - AluS SINE Alu -230 69 1 2183 176 72 133 chr6 2962851 2963167 -179452075 - L1ME2 LINE L1 -267 5897 5564 849 159 0 0 chr6 2963167 2963299 -179451943 + FLAM_C SINE Alu 2 133 0 2183 176 72 133 chr6 2963299 2963611 -179451631 - L1ME2 LINE L1 -600 5564 5235 1229 183 5 0 chr6 2963611 2963825 -179451417 + L1PB4 LINE L1 5935 6154 -2 2183 176 72 133 chr6 2963825 2964449 -179450793 - L1ME2 LINE L1 -929 5235 4724 751 200 0 0 chr6 2964456 2964581 -179450661 + FLAM_C SINE Alu 3 127 -16 7431 213 46 48 chr6 2964586 2965326 -179449916 - L1ME2 LINE L1 -1414 4732 3993 189 0 0 0 chr6 2965326 2965347 -179449895 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1654 183 4 0 chr6 2965349 2965623 -179449619 - AluJo SINE Alu -26 286 12 7431 213 46 48 chr6 2965623 2967162 -179448080 - L1ME2 LINE L1 -2154 3992 2453 2076 135 0 0 chr6 2969072 2969383 -179445859 + L1PA16 LINE L1 5483 5793 -373 415 137 14 0 chr6 2969383 2969453 -179445789 + L1PA16 LINE L1 6077 6150 -16 477 285 129 0 chr6 2969504 2969690 -179445552 + MIR SINE MIR 20 229 -33 294 206 11 0 chr6 2970409 2970489 -179444753 + L1ME3A LINE L1 6007 6091 -79 2203 119 0 0 chr6 2970611 2970913 -179444329 + AluY SINE Alu 1 302 -9 639 311 175 10 chr6 2971741 2972352 -179442890 - L1M4 LINE L1 -1448 4698 3987 697 258 36 22 chr6 2972471 2972535 -179442707 + L1ME2 LINE L1 5728 5790 -376 2052 214 0 0 chr6 2972535 2972900 -179442342 + MLT1A1 LTR MaLR 1 365 0 697 258 36 22 chr6 2972900 2973060 -179442182 + L1ME2 LINE L1 5790 5955 -211 383 288 61 0 chr6 2973067 2973199 -179442043 + L1ME2 LINE L1 6015 6154 -10 401 306 206 29 chr6 2973265 2973561 -179441681 + L2 LINE L2 1830 2072 -1242 2490 63 0 13 chr6 2973561 2973862 -179441380 - AluY SINE Alu -14 297 1 401 306 206 29 chr6 2973862 2974326 -179440916 + L2 LINE L2 2072 2725 -589 35 24 0 0 chr6 2974368 2974410 -179440832 + AT_rich Low_complexity Low_complexity 1 42 0 1833 94 0 84 chr6 2974410 2974490 -179440752 + AluSx SINE Alu 50 135 -177 2297 94 0 0 chr6 2974490 2974776 -179440466 + AluY SINE Alu 1 286 -25 1833 94 0 84 chr6 2974776 2974982 -179440260 + AluSx SINE Alu 135 312 0 1245 101 0 0 chr6 2974982 2975141 -179440101 + AluSg/x SINE Alu 132 290 -20 705 122 0 0 chr6 2976141 2976239 -179439003 + AluJ/FLAM SINE Alu 2 99 -213 2089 122 0 0 chr6 2976258 2976545 -179438697 + AluSx SINE Alu 21 307 -5 24 32 0 0 chr6 2976550 2976581 -179438661 + AT_rich Low_complexity Low_complexity 1 31 0 424 262 59 73 chr6 2976898 2977238 -179438004 - L1M4 LINE L1 -934 5212 4878 243 261 34 67 chr6 2977274 2977393 -179437849 + MER94 DNA DNA 6 120 -14 924 260 124 57 chr6 2977426 2977619 -179437623 - L1M4 LINE L1 -1307 4839 4660 2532 81 0 0 chr6 2977619 2977927 -179437315 + AluSg SINE Alu 1 308 -2 924 260 124 57 chr6 2977927 2978026 -179437216 - L1M4 LINE L1 -1486 4660 4569 1811 130 36 30 chr6 2978026 2978327 -179436915 - AluJo SINE Alu -9 303 1 924 260 124 57 chr6 2978327 2978753 -179436489 - L1M4 LINE L1 -1577 4569 4072 289 294 14 27 chr6 2978764 2978910 -179436332 - L1MDa LINE L1 -3630 2499 2356 360 229 144 65 chr6 2979070 2979376 -179435866 - L1MDa LINE L1 -3809 2320 2031 567 279 124 42 chr6 2979540 2980022 -179435220 - L1MDa LINE L1 -4433 1696 1233 1753 173 3 10 chr6 2980063 2980352 -179434890 + AluJo SINE Alu 2 288 -24 22 35 0 0 chr6 2980352 2980381 -179434861 + AT_rich Low_complexity Low_complexity 1 29 0 437 279 96 100 chr6 2980381 2980983 -179434259 - L1MDa LINE L1 -4949 1170 571 257 297 20 10 chr6 2981410 2981511 -179433731 + MIR SINE MIR 50 151 -57 2379 115 0 0 chr6 2982020 2982332 -179432910 + AluSx SINE Alu 1 312 0 230 136 23 0 chr6 2983738 2983782 -179431460 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 869 170 7 0 chr6 2983793 2984083 -179431159 + (TCCA)n Simple_repeat Simple_repeat 1 292 0 362 211 138 24 chr6 2984279 2984402 -179430840 + MIR SINE MIR 125 261 -1 740 184 0 22 chr6 2985051 2985187 -179430055 + FLAM_A SINE Alu 1 133 0 882 193 0 0 chr6 2986205 2986350 -179428892 + AluJb SINE Alu 138 282 -30 206 32 32 0 chr6 2986354 2986385 -179428857 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2250 111 0 19 chr6 2986758 2987073 -179428169 - AluSx SINE Alu 0 312 4 374 226 0 29 chr6 2987633 2987735 -179427507 - L1MB2 LINE L1 0 6171 6073 364 244 38 53 chr6 2989625 2989756 -179425486 + L2 LINE L2 3184 3312 -1 22 0 0 0 chr6 2990602 2990624 -179424618 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 2991051 2991071 -179424171 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr6 2991263 2991284 -179423958 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 2991417 2991439 -179423803 + GC_rich Low_complexity Low_complexity 1 22 0 816 196 40 67 chr6 2991783 2992008 -179423234 - MLT1A1 LTR MaLR -146 219 1 7727 203 45 40 chr6 2992008 2993736 -179421506 - MLT1A1-int LTR MaLR 0 1735 1 1362 179 56 88 chr6 2993736 2994110 -179421132 - MLT1A1 LTR MaLR 0 365 4 564 232 149 28 chr6 2994146 2994327 -179420915 + MLT1A1 LTR MaLR 163 365 0 202 80 40 40 chr6 2994809 2994859 -179420383 + T-rich Low_complexity Low_complexity 3 52 0 21 0 0 0 chr6 2994862 2994883 -179420359 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 2995058 2995097 -179420145 + AT_rich Low_complexity Low_complexity 1 39 0 1462 141 4 13 chr6 2995098 2995325 -179419917 + AluJo SINE Alu 87 311 -1 2261 111 6 19 chr6 2995581 2995897 -179419345 - AluSx SINE Alu 0 312 1 556 279 298 11 chr6 2996169 2996545 -179418697 + L2 LINE L2 2830 3313 0 1042 323 91 29 chr6 2996817 2996894 -179418348 + L3 LINE CR1 445 516 -1061 2346 70 3 0 chr6 2996894 2997192 -179418050 + AluSp SINE Alu 1 299 -14 1042 323 91 29 chr6 2997192 2997227 -179418015 + L3 LINE CR1 516 547 -1030 2171 109 0 0 chr6 2997227 2997529 -179417713 + AluSx SINE Alu 2 303 -9 1042 323 91 29 chr6 2997529 2998043 -179417199 + L3 LINE CR1 547 1111 -466 393 328 61 15 chr6 2998141 2998339 -179416903 + MIR SINE MIR 1 207 -55 2039 87 23 33 chr6 2999030 2999320 -179415922 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr6 2999320 2999342 -179415900 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1817 106 92 3 chr6 2999614 2999896 -179415346 - AluSx SINE Alu -5 307 1 1610 154 0 52 chr6 2999973 3000278 -179414964 - AluJo SINE Alu -14 298 10 502 271 40 20 chr6 3000349 3000500 -179414742 - MER21B LTR ERV1 -612 251 98 456 221 0 0 chr6 3000539 3000616 -179414626 - MER21B LTR ERV1 -769 94 18 1946 101 3 39 chr6 3000616 3000814 -179414428 - AluSq SINE Alu 0 313 140 2015 121 0 13 chr6 3000814 3001128 -179414114 - AluSx SINE Alu -2 310 1 1946 101 3 39 chr6 3001128 3001264 -179413978 - AluSq SINE Alu -173 140 1 208 344 52 31 chr6 3001359 3001455 -179413787 - MIR3 SINE MIR -45 163 66 230 207 8 107 chr6 3002801 3002922 -179412320 + C-rich Low_complexity Low_complexity 5 113 0 404 192 22 82 chr6 3002969 3003151 -179412091 + CT-rich Low_complexity Low_complexity 2 172 0 890 194 29 0 chr6 3003230 3003405 -179411837 - L1MC3 LINE L1 -391 7394 7215 334 113 42 28 chr6 3003415 3003486 -179411756 - L1MC3 LINE L1 -1310 6475 6404 2167 108 0 3 chr6 3005920 3006225 -179409017 - AluSx SINE Alu -8 304 1 219 69 0 0 chr6 3007753 3007782 -179407460 + (CCCCCT)n Simple_repeat Simple_repeat 4 32 0 2048 125 0 0 chr6 3007826 3008123 -179407119 - AluSg SINE Alu -13 297 1 256 308 58 58 chr6 3008353 3008457 -179406785 - L2 LINE L2 -11 3261 3158 207 272 53 88 chr6 3008792 3008906 -179406336 + MIR SINE MIR 92 201 -61 2902 161 28 19 chr6 3008914 3009456 -179405786 + L1MA9 LINE L1 5476 6022 -290 7493 140 75 116 chr6 3009456 3011220 -179404022 + pTR5 LTR ERV1 743 2433 -5 550 235 68 8 chr6 3011265 3011397 -179403845 + AluSg/x SINE Alu 146 285 -25 1201 196 44 18 chr6 3011397 3011592 -179403650 + L1MA9 LINE L1 6031 6236 -76 2016 128 87 16 chr6 3011592 3011959 -179403283 + MSTD LTR MaLR 4 396 0 1201 196 44 18 chr6 3011959 3012038 -179403204 + L1MA9 LINE L1 6236 6312 0 1818 159 26 100 chr6 3012740 3013161 -179402081 - MLT1B LTR MaLR 0 390 1 1655 98 0 21 chr6 3013756 3013992 -179401250 + AluSx SINE Alu 1 231 -81 201 74 0 0 chr6 3014003 3014030 -179401212 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 180 227 15 45 chr6 3014613 3014679 -179400563 + L2 LINE L2 3171 3234 -79 287 181 0 36 chr6 3014764 3014847 -179400395 + C-rich Low_complexity Low_complexity 4 83 0 1709 149 4 4 chr6 3014864 3015140 -179400102 - AluJb SINE Alu -34 278 3 1165 206 124 65 chr6 3015143 3015555 -179399687 + LTR56 LTR ERV1 10 445 0 557 200 30 0 chr6 3015639 3015739 -179399503 + MER21B LTR ERV1 2 104 -759 1850 225 112 34 chr6 3015799 3016327 -179398915 + MER21B LTR ERV1 214 782 -81 645 173 39 0 chr6 3016418 3016522 -179398720 - FLAM_C SINE Alu -34 109 2 430 309 140 40 chr6 3016587 3016959 -179398283 + L1ME4a LINE L1 4981 5389 -757 332 359 38 11 chr6 3016994 3017178 -179398064 + L1ME4a LINE L1 5699 5887 -234 299 268 147 47 chr6 3017312 3017611 -179397631 + L1MC4 LINE L1 7525 7853 -189 878 82 8 0 chr6 3017724 3017846 -179397396 - AluY SINE Alu -19 292 170 296 233 124 32 chr6 3017847 3018068 -179397174 - L1MEc LINE L1 -5226 1721 1356 285 261 11 22 chr6 3018190 3018282 -179396960 - L1MEc LINE L1 -6269 869 779 205 371 114 0 chr6 3018372 3018477 -179396765 - MER5A DNA MER1_type -69 120 4 212 328 33 0 chr6 3018501 3018562 -179396680 + MER5B DNA MER1_type 26 88 -90 5683 188 88 56 chr6 3018591 3020129 -179395113 - pTR5 LTR ERV1 -157 2210 31 243 154 39 58 chr6 3020351 3020403 -179394839 - MER5B DNA MER1_type -127 51 1 234 259 19 0 chr6 3020403 3020455 -179394787 + MIR3 SINE MIR 153 205 -3 30 27 0 0 chr6 3020865 3020902 -179394340 + AT_rich Low_complexity Low_complexity 1 37 0 198 342 0 26 chr6 3020990 3021066 -179394176 - MIR SINE MIR -85 123 50 2071 133 0 0 chr6 3021069 3021378 -179393864 + AluSg SINE Alu 1 309 -1 798 288 125 16 chr6 3021575 3021889 -179393353 - MLT1I LTR MaLR 0 409 61 2220 123 18 47 chr6 3021889 3022270 -179392972 - THE1C LTR MaLR 0 375 6 278 213 16 16 chr6 3022301 3022362 -179392880 - MLT1I LTR MaLR -344 65 5 1773 136 9 28 chr6 3023215 3023532 -179391710 + AluJb SINE Alu 1 311 -1 542 300 106 25 chr6 3023543 3023780 -179391462 - MIR SINE MIR 0 262 7 1764 87 23 4 chr6 3025067 3025332 -179389910 + AluSx SINE Alu 1 270 -42 189 0 0 0 chr6 3025336 3025357 -179389885 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 38 89 0 0 chr6 3025575 3025676 -179389566 + GC_rich Low_complexity Low_complexity 1 101 0 13965 187 35 57 chr6 3026365 3032343 -179382899 + L1P5 LINE L1 6 6067 -800 2272 107 0 0 chr6 3032343 3032653 -179382589 + AluSg SINE Alu 1 310 0 13965 187 35 57 chr6 3032653 3033085 -179382157 + L1P5 LINE L1 6067 6507 -360 313 244 49 0 chr6 3033133 3033215 -179382027 + MLT1J1 LTR MaLR 350 435 -11 525 304 212 23 chr6 3033552 3034023 -179381219 - L2 LINE L2 -930 2384 1825 967 173 37 6 chr6 3034187 3034349 -179380893 - FAM SINE Alu -8 167 1 260 163 38 50 chr6 3034406 3034486 -179380756 + L1M LINE L1 5309 5387 -2421 423 315 76 73 chr6 3034696 3035039 -179380203 - L1ME4a LINE L1 -24 6097 5754 203 170 21 0 chr6 3035090 3035137 -179380105 + CT-rich Low_complexity Low_complexity 3 50 0 323 157 100 0 chr6 3035143 3035213 -179380029 + L1MB2 LINE L1 6088 6164 -7 358 312 109 18 chr6 3035244 3035465 -179379777 - L1ME4a LINE L1 -2099 5709 5469 2441 139 43 26 chr6 3035511 3035934 -179379308 - MSTB1 LTR MaLR 0 432 3 461 332 63 90 chr6 3036071 3036562 -179378680 + L1M4 LINE L1 4207 4684 -1462 1990 141 3 3 chr6 3037052 3037358 -179377884 + AluSx SINE Alu 1 306 -6 552 196 9 9 chr6 3037365 3037477 -179377765 + MER50 LTR ERV1 493 604 -130 4112 144 21 32 chr6 3037567 3038343 -179376899 + L1MB5 LINE L1 5408 6174 0 227 323 0 0 chr6 3038812 3038874 -179376368 + L2 LINE L2 3194 3255 -17 2505 35 0 7 chr6 3038901 3039211 -179376031 + AluY SINE Alu 1 308 -3 391 269 0 10 chr6 3040865 3040969 -179374273 - MIR SINE MIR 0 262 160 212 317 48 28 chr6 3041086 3041231 -179374011 - MIR3 SINE MIR -59 149 2 225 0 0 0 chr6 3041593 3041618 -179373624 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 3042111 3042133 -179373109 + AT_rich Low_complexity Low_complexity 1 22 0 589 67 48 0 chr6 3042665 3042769 -179372473 + (TA)n Simple_repeat Simple_repeat 2 110 0 1722 130 66 36 chr6 3044292 3044593 -179370649 - AluSx SINE Alu -2 310 1 225 209 9 19 chr6 3044784 3044889 -179370353 + GA-rich Low_complexity Low_complexity 2 105 0 709 124 133 0 chr6 3045355 3045468 -179369774 + FLAM_C SINE Alu 1 128 -5 446 294 69 87 chr6 3046156 3046394 -179368848 + L1M4 LINE L1 2696 2937 -3209 1744 155 55 0 chr6 3046394 3046685 -179368557 + AluJo SINE Alu 1 307 -5 446 294 69 87 chr6 3046685 3046720 -179368522 + L1M4 LINE L1 2937 2971 -3175 2305 118 0 0 chr6 3046720 3047024 -179368218 + AluSx SINE Alu 1 304 -8 446 294 69 87 chr6 3047024 3047273 -179367969 + L1M4 LINE L1 2971 3223 -2923 1094 134 0 41 chr6 3047444 3047615 -179367627 + AluSg/x SINE Alu 121 284 -28 209 0 62 0 chr6 3047615 3047647 -179367595 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 2414 81 10 0 chr6 3048072 3048368 -179366874 + AluY SINE Alu 1 299 -12 243 326 71 0 chr6 3048369 3048510 -179366732 + L1ME4a LINE L1 5970 6120 -1 2292 145 18 43 chr6 3048758 3049200 -179366042 + MER65A LTR ERV1 12 442 -3 396 0 0 0 chr6 3050424 3050468 -179364774 + (CA)n Simple_repeat Simple_repeat 1 44 0 183 80 0 0 chr6 3050899 3050924 -179364318 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2100 123 16 10 chr6 3052065 3052374 -179362868 - AluSx SINE Alu -1 311 1 615 228 69 0 chr6 3053796 3053941 -179361301 - MER96 DNA MER1_type? -1 174 20 1638 208 1 61 chr6 3053941 3054367 -179360875 - L1MB7 LINE L1 -2 6182 5776 859 258 10 7 chr6 3054366 3054668 -179360574 + L1M4 LINE L1 2903 3205 -2941 * 2252 115 3 0 chr6 3054682 3054977 -179360265 - AluSx SINE Alu -16 296 1 200 321 79 21 chr6 3055912 3056052 -179359190 - L2 LINE L2 0 3272 3125 1132 168 162 70 chr6 3056208 3056523 -179358719 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 3056707 3056809 -179358433 + (TG)n Simple_repeat Simple_repeat 1 100 0 287 251 16 8 chr6 3056830 3057091 -179358151 + (TG)n Simple_repeat Simple_repeat 1 263 0 420 271 0 25 chr6 3057172 3057502 -179357740 + (TG)n Simple_repeat Simple_repeat 1 321 0 270 239 6 12 chr6 3057521 3057684 -179357558 + (TG)n Simple_repeat Simple_repeat 1 162 0 8253 67 1 0 chr6 3058223 3059191 -179356051 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 3059704 3060009 -179355233 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 3060370 3060587 -179354655 - MER20 DNA MER1_type 0 219 4 2460 84 7 3 chr6 3061677 3061985 -179353257 + AluSx SINE Alu 1 309 -3 579 170 54 48 chr6 3062093 3062240 -179353002 + MLT1D LTR MaLR 1 148 -357 1437 60 27 0 chr6 3062578 3062763 -179352479 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 3063057 3063603 -179351639 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 3063649 3063965 -179351277 + MLT1D LTR MaLR 130 505 0 231 355 167 21 chr6 3064071 3064257 -179350985 - MIR SINE MIR -37 225 13 2309 98 7 0 chr6 3064367 3064664 -179350578 - AluSx SINE Alu -13 299 1 2125 144 0 0 chr6 3065144 3065442 -179349800 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 3066798 3066827 -179348415 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 3067142 3067272 -179347970 + FLAM_A SINE Alu 2 130 -3 3383 147 37 35 chr6 3067993 3068150 -179347092 + MER41B LTR ERV1 1 156 -479 1752 165 7 20 chr6 3068150 3068453 -179346789 + AluJo SINE Alu 1 299 -13 3383 147 37 35 chr6 3068453 3068921 -179346321 + MER41B LTR ERV1 156 627 -8 1498 71 0 5 chr6 3069299 3069495 -179345747 - MER4E LTR ERV1 0 779 585 21 36 0 0 chr6 3069748 3069776 -179345466 + GC_rich Low_complexity Low_complexity 1 28 0 2830 86 30 92 chr6 3069827 3070520 -179344722 + SVA Other Other 393 868 -555 1458 101 6 60 chr6 3070533 3070869 -179344373 + SVA Other Other 549 866 -520 6559 71 3 60 chr6 3070935 3071947 -179343295 + SVA Other Other 433 1386 0 1273 99 117 9 chr6 3071964 3072177 -179343065 - MER4B LTR ERV1 -183 427 192 337 174 14 0 chr6 3072192 3072261 -179342981 - AluSp/q SINE Alu -3 300 231 200 321 79 21 chr6 3072461 3072601 -179342641 - L2 LINE L2 0 3272 3125 1141 175 156 63 chr6 3072757 3073072 -179342170 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 3073256 3073358 -179341884 + (TG)n Simple_repeat Simple_repeat 1 100 0 305 239 12 20 chr6 3073379 3073640 -179341602 + (TG)n Simple_repeat Simple_repeat 1 258 0 420 271 0 25 chr6 3073721 3074051 -179341191 + (TG)n Simple_repeat Simple_repeat 1 321 0 234 245 6 13 chr6 3074070 3074229 -179341013 + (TG)n Simple_repeat Simple_repeat 1 158 0 8253 67 1 0 chr6 3074768 3075736 -179339506 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 3076249 3076554 -179338688 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 3076915 3077132 -179338110 - MER20 DNA MER1_type 0 219 4 2468 84 7 3 chr6 3078222 3078531 -179336711 + AluSx SINE Alu 1 310 -2 579 170 54 48 chr6 3078641 3078788 -179336454 + MLT1D LTR MaLR 1 148 -357 1322 76 32 5 chr6 3079126 3079311 -179335931 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 3079605 3080151 -179335091 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 3080197 3080513 -179334729 + MLT1D LTR MaLR 130 505 0 236 355 167 21 chr6 3080619 3080805 -179334437 - MIR SINE MIR -37 225 13 2318 97 7 0 chr6 3080915 3081213 -179334029 - AluSx SINE Alu -12 300 1 2138 141 0 0 chr6 3081693 3081991 -179333251 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 3083346 3083375 -179331867 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 3083690 3083820 -179331422 + FLAM_A SINE Alu 2 130 -3 3383 147 37 35 chr6 3084541 3084698 -179330544 + MER41B LTR ERV1 1 156 -479 1752 165 7 20 chr6 3084698 3085001 -179330241 + AluJo SINE Alu 1 299 -13 3383 147 37 35 chr6 3085001 3085469 -179329773 + MER41B LTR ERV1 156 627 -8 2940 122 54 40 chr6 3085847 3086255 -179328987 - MER4B LTR ERV1 0 766 197 2093 97 29 42 chr6 3086255 3086564 -179328678 - AluSx SINE Alu -7 305 1 2940 122 54 40 chr6 3086564 3086764 -179328478 - MER4B LTR ERV1 -569 197 1 2211 191 48 0 chr6 3087258 3087698 -179327544 - LOR1b LTR ERV1 0 461 1 497 130 11 22 chr6 3087698 3087790 -179327452 - LOR1b-int LTR ERV1 0 8120 8030 * 1552 141 8 4 chr6 3087789 3088052 -179327190 - MER41D-int LTR ERV1 -2056 6064 5801 * 31474 101 37 24 chr6 3088042 3091976 -179323266 - MER41D-int LTR ERV1 -2596 5524 1640 3220 193 43 55 chr6 3091976 3092810 -179322432 - LTR5 LTR ERVK -145 824 1 31474 101 37 24 chr6 3092810 3093596 -179321646 - MER41D-int LTR ERV1 -6480 1640 730 9210 40 2 3 chr6 3093596 3094666 -179320576 + MER11C LTR ERVK 1 1069 -2 31474 101 37 24 chr6 3094666 3095190 -179320052 - MER41D-int LTR ERV1 -7390 730 214 2092 117 34 0 chr6 3095190 3095488 -179319754 + AluSx SINE Alu 1 308 -4 619 170 0 45 chr6 3095547 3095583 -179319659 - FRAM SINE Alu -183 129 93 2846 170 17 68 chr6 3095583 3095950 -179319292 - MER41D LTR ERV1 0 557 230 2158 107 0 7 chr6 3095950 3096241 -179319001 + AluSg SINE Alu 1 289 -21 2846 170 17 68 chr6 3096241 3096460 -179318782 - MER41D LTR ERV1 -327 230 1 619 170 0 45 chr6 3096460 3096535 -179318707 - FRAM SINE Alu -219 93 23 425 207 224 62 chr6 3096623 3096687 -179318555 - Charlie7 DNA MER1_type -586 2026 1974 2192 120 3 3 chr6 3096687 3096996 -179318246 - AluSx SINE Alu -3 309 1 425 207 224 62 chr6 3096996 3097284 -179317958 - Charlie7 DNA MER1_type -638 1974 1617 323 213 16 0 chr6 3097735 3097796 -179317446 - MER94 DNA DNA -1 133 72 324 118 118 0 chr6 3097919 3097987 -179317255 - LTR50 LTR ERVL -7 788 713 1874 147 3 3 chr6 3099066 3099372 -179315870 - AluSx SINE Alu -6 306 1 2136 107 3 3 chr6 3099612 3099920 -179315322 + AluSg SINE Alu 1 308 -2 311 152 0 0 chr6 3100264 3100310 -179314932 + Alu SINE Alu 252 297 -11 1576 237 57 0 chr6 3100827 3101283 -179313959 - MER114 LTR ERV -121 527 46 742 255 13 0 chr6 3101298 3101455 -179313787 - MER45A DNA AcHobo 0 178 20 605 184 9 9 chr6 3101657 3101771 -179313471 - MLT1A2 LTR MaLR 0 374 261 7713 154 73 68 chr6 3101771 3103449 -179311793 + pTR5 LTR ERV1 743 2429 -9 230 187 67 53 chr6 3103719 3103794 -179311448 - L1MA7 LINE L1 -4 6287 6212 2241 124 29 9 chr6 3103794 3104140 -179311102 - LTR1 LTR ERV1 0 785 433 1378 158 12 116 chr6 3104156 3104491 -179310751 - LTR1 LTR ERV1 -462 323 24 388 123 92 0 chr6 3104526 3104591 -179310651 - L1MA8 LINE L1 -76 6215 6145 291 294 165 0 chr6 3104591 3104700 -179310542 + MER50 LTR ERV1 1 127 -607 820 266 122 42 chr6 3104763 3105109 -179310133 + MER50 LTR ERV1 105 490 -244 2076 115 3 0 chr6 3105109 3105404 -179309838 + AluY SINE Alu 1 296 -15 820 266 122 42 chr6 3105404 3105466 -179309776 + MER50 LTR ERV1 490 546 -188 4299 174 67 59 chr6 3105531 3106911 -179308331 + pTR5 LTR ERV1 724 2436 -2 22 0 0 0 chr6 3107016 3107038 -179308204 + AT_rich Low_complexity Low_complexity 1 22 0 583 226 24 8 chr6 3107093 3107217 -179308025 + FLAM_A SINE Alu 4 129 -4 877 128 101 13 chr6 3107300 3107449 -179307793 - MER44D DNA MER2_type 0 605 444 844 89 0 0 chr6 3107506 3107619 -179307623 - MER4E LTR ERV1 -14 765 485 3101 123 161 21 chr6 3107624 3108202 -179307040 - MER4D LTR ERV1 -237 666 8 2267 87 3 0 chr6 3108202 3108501 -179306741 + AluSp SINE Alu 1 300 -13 421 211 120 49 chr6 3108517 3108555 -179306687 - MER44D DNA MER2_type -2069 422 388 2097 90 10 3 chr6 3108555 3108843 -179306399 + AluSq SINE Alu 1 290 -23 421 211 120 49 chr6 3108843 3108858 -179306384 - MER44D DNA MER2_type -2103 388 375 213 39 0 0 chr6 3108858 3108884 -179306358 + (TC)n Simple_repeat Simple_repeat 1 26 0 421 211 120 49 chr6 3108884 3108971 -179306271 - MER44D DNA MER2_type -2116 375 1 1851 180 50 40 chr6 3108991 3109435 -179305807 + MER83 LTR ERV1 1 448 0 2084 125 0 6 chr6 3109832 3110145 -179305097 + AluSx SINE Alu 1 311 -1 1728 144 3 11 chr6 3111659 3111963 -179303279 + AluSx SINE Alu 1 302 0 2238 87 0 0 chr6 3112557 3112856 -179302386 + AluY SINE Alu 1 299 -12 989 95 15 7 chr6 3112865 3113002 -179302240 + AluSg SINE Alu 1 138 -172 2113 103 0 19 chr6 3113003 3113314 -179301928 + AluSx SINE Alu 1 305 -7 1263 310 170 13 chr6 3115324 3116355 -179298887 + L2 LINE L2 2094 3290 -23 2197 95 0 0 chr6 3116362 3116656 -179298586 + AluSx SINE Alu 6 299 -13 183 194 0 0 chr6 3116656 3116687 -179298555 + L2 LINE L2 3240 3270 -2 588 250 83 46 chr6 3117080 3117210 -179298032 - MER58A DNA MER1_type -2196 224 81 2160 113 0 0 chr6 3117210 3117521 -179297721 + AluSq SINE Alu 1 311 -2 588 250 83 46 chr6 3117521 3117606 -179297636 - MER58A DNA MER1_type -2339 81 1 314 163 101 93 chr6 3117969 3118098 -179297144 + MLT1J LTR MaLR 209 338 -173 201 291 18 0 chr6 3118677 3118732 -179296510 - L2 LINE L2 -2 3270 3215 1740 161 3 35 chr6 3119658 3119880 -179295362 + AluJo SINE Alu 1 212 -100 1908 115 0 11 chr6 3119880 3120158 -179295084 + AluSc SINE Alu 23 297 -12 1740 161 3 35 chr6 3120158 3120246 -179294996 + AluJo SINE Alu 212 301 -11 2209 114 0 0 chr6 3121017 3121325 -179293917 + AluSx SINE Alu 1 308 -4 2160 89 7 0 chr6 3121904 3122197 -179293045 + AluSx SINE Alu 1 295 -17 531 210 185 107 chr6 3122396 3122649 -179292593 + MLT1H1 LTR MaLR 66 298 -257 2295 77 3 0 chr6 3122649 3122946 -179292296 + AluSp SINE Alu 1 298 -15 531 210 185 107 chr6 3122946 3123140 -179292102 + MLT1H1 LTR MaLR 298 548 -7 292 260 0 13 chr6 3123155 3123232 -179292010 + MLT1H1-int LTR MaLR 15 90 -1281 252 224 138 0 chr6 3123383 3123441 -179291801 + MLT1H1-int LTR MaLR 476 541 -830 1737 171 13 0 chr6 3124115 3124413 -179290829 + MLT1B LTR MaLR 1 302 -88 1051 221 71 24 chr6 3126833 3127281 -179287961 + MLT1D LTR MaLR 1 505 0 695 156 25 8 chr6 3128009 3128131 -179287111 - AluJb SINE Alu -187 125 2 448 277 161 0 chr6 3128511 3128666 -179286576 + MIR3 SINE MIR 20 199 -9 343 333 113 33 chr6 3128894 3129359 -179285883 + L1 LINE L1 3930 4429 -1717 233 373 24 24 chr6 3129432 3129601 -179285641 - MIR SINE MIR -90 172 4 516 271 46 13 chr6 3130097 3130248 -179284994 + LTR35 LTR ERV1 463 618 0 578 238 78 24 chr6 3130722 3130928 -179284314 - HAL1 LINE L1 0 2507 2291 787 215 0 6 chr6 3130933 3131096 -179284146 - AluJo SINE Alu 0 312 151 290 236 95 107 chr6 3131163 3131405 -179283837 - HAL1 LINE L1 -358 2149 1911 1860 158 13 16 chr6 3132537 3132840 -179282402 + MER1B DNA MER1_type 38 339 0 872 182 13 0 chr6 3132905 3133064 -179282178 - AluJo SINE Alu -151 161 1 6006 94 14 25 chr6 3133347 3134583 -179280659 + L1PA14 LINE L1 4941 6161 0 356 287 17 98 chr6 3134777 3134951 -179280291 - HAL1 LINE L1 -1606 901 742 222 240 0 0 chr6 3135454 3135504 -179279738 + (TA)n Simple_repeat Simple_repeat 2 51 0 287 49 24 0 chr6 3135871 3135912 -179279330 + (TG)n Simple_repeat Simple_repeat 2 43 0 1100 103 0 0 chr6 3135964 3136109 -179279133 + AluSg SINE Alu 1 145 -165 429 115 179 0 chr6 3136109 3136187 -179279055 + AluSc SINE Alu 201 292 -17 198 103 0 0 chr6 3136834 3136863 -179278379 + (A)n Simple_repeat Simple_repeat 1 29 0 215 222 25 37 chr6 3137493 3137574 -179277668 + C-rich Low_complexity Low_complexity 1 80 0 391 133 0 0 chr6 3137991 3138051 -179277191 + MER41A LTR ERV1 131 190 -364 2021 85 61 0 chr6 3138052 3138346 -179276896 + AluSx SINE Alu 1 312 0 6101 83 25 20 chr6 3138348 3139289 -179275953 + L1PB1 LINE L1 5151 6097 -54 1908 130 7 17 chr6 3139289 3139589 -179275653 + AluSg SINE Alu 1 297 -13 6101 83 25 20 chr6 3139589 3139645 -179275597 + L1PB1 LINE L1 6097 6151 0 32 26 0 0 chr6 3139646 3139685 -179275557 + AT_rich Low_complexity Low_complexity 1 39 0 430 239 19 65 chr6 3139938 3140093 -179275149 - MER20 DNA MER1_type 0 219 72 389 273 66 93 chr6 3140110 3140576 -179274666 - L1M4 LINE L1 -906 5240 4798 2120 112 0 0 chr6 3140698 3140994 -179274248 - AluSg SINE Alu -14 296 1 1913 146 7 0 chr6 3141050 3141337 -179273905 + AluSx SINE Alu 1 289 -23 33 0 0 0 chr6 3141337 3141370 -179273872 + AT_rich Low_complexity Low_complexity 1 33 0 436 162 0 0 chr6 3141384 3141452 -179273790 + AluS SINE Alu 2 69 -243 218 54 0 27 chr6 3141472 3141509 -179273733 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 485 308 65 16 chr6 3141512 3141987 -179273255 - L1M4 LINE L1 -1530 4616 4122 196 360 11 22 chr6 3142040 3142129 -179273113 + L3 LINE CR1 324 411 -1166 222 239 60 15 chr6 3142407 3142474 -179272768 + L3 LINE CR1 892 961 -616 4868 133 47 21 chr6 3143277 3144147 -179271095 - MER4D LTR ERV1 0 872 1 22 0 0 0 chr6 3144227 3144249 -179270993 + AT_rich Low_complexity Low_complexity 1 22 0 2170 142 39 88 chr6 3145036 3145368 -179269874 + MER4B LTR ERV1 1 348 -431 1778 148 40 0 chr6 3145368 3145665 -179269577 - AluJb SINE Alu -3 309 1 2170 142 39 88 chr6 3145665 3145939 -179269303 + MER4B LTR ERV1 348 779 0 3820 147 3 51 chr6 3146028 3146695 -179268547 + MER41B LTR ERV1 1 635 0 2363 161 60 31 chr6 3148048 3148085 -179267157 + MER31A LTR ERV1 1 35 -450 2029 132 21 0 chr6 3148085 3148520 -179266722 - AluSx SINE Alu 0 441 1 2363 161 60 31 chr6 3148520 3148935 -179266307 + MER31A LTR ERV1 35 467 -18 216 297 16 0 chr6 3149196 3149260 -179265982 + CT-rich Low_complexity Low_complexity 4 68 0 821 160 23 0 chr6 3149277 3149408 -179265834 - FRAM SINE Alu -38 138 5 361 182 0 26 chr6 3150183 3150260 -179264982 + MER39 LTR ERV1 633 707 0 2205 126 0 13 chr6 3150293 3150594 -179264648 + AluSx SINE Alu 1 297 -15 1226 126 0 11 chr6 3150600 3150783 -179264459 + AluSg/x SINE Alu 132 312 0 2373 102 0 10 chr6 3151569 3151882 -179263360 - AluSx SINE Alu -2 310 1 2434 88 0 0 chr6 3152348 3152644 -179262598 - AluSg SINE Alu -14 296 1 352 302 93 79 chr6 3152644 3152922 -179262320 - L2 LINE L2 -6 3266 2985 2151 137 154 7 chr6 3153147 3153602 -179261640 - MER1A DNA MER1_type -8 525 1 237 316 95 50 chr6 3153610 3153708 -179261534 - L2 LINE L2 -685 2629 2537 2288 113 0 0 chr6 3153708 3154008 -179261234 + AluSg SINE Alu 1 300 -10 237 316 95 50 chr6 3154008 3154266 -179260976 - L2 LINE L2 -777 2537 2257 288 321 0 79 chr6 3156821 3156961 -179258281 + L2 LINE L2 3141 3269 -3 3946 105 27 5 chr6 3156998 3157550 -179257692 + LTR6A LTR ERV1 1 564 0 33 43 0 0 chr6 3157810 3157857 -179257385 + AT_rich Low_complexity Low_complexity 1 47 0 2094 122 0 22 chr6 3157910 3158221 -179257021 + AluSx SINE Alu 1 304 -8 496 176 77 6 chr6 3158557 3158683 -179256559 - L1MD3 LINE L1 0 7982 6246 2030 197 35 0 chr6 3158684 3159106 -179256136 - MER54A LTR ERVL 0 901 465 304 223 100 3 chr6 3159213 3159319 -179255923 - L1MD3 LINE L1 -108 7871 7565 2645 56 0 0 chr6 3159479 3159784 -179255458 - AluY SINE Alu -6 305 1 268 146 0 0 chr6 3160200 3160241 -179255001 + MSTB1 LTR MaLR 4 44 -382 895 213 0 6 chr6 3160241 3160415 -179254827 - FRAM SINE Alu -3 173 1 2002 128 80 13 chr6 3160415 3160790 -179254452 + MSTB1 LTR MaLR 33 432 0 1355 215 100 0 chr6 3161229 3161540 -179253702 + MER2 DNA MER2_type 2 343 -1 440 180 9 81 chr6 3161786 3161897 -179253345 - Tigger1 DNA MER2_type -2315 103 1 258 109 254 0 chr6 3161900 3161955 -179253287 + L1M4c LINE L1 1452 1520 -4864 * 4187 175 45 38 chr6 3161950 3162377 -179252865 + L1MB4 LINE L1 4827 5250 -930 2461 74 3 0 chr6 3162377 3162676 -179252566 + AluSp SINE Alu 1 300 -13 4187 175 45 38 chr6 3162676 3163170 -179252072 + L1MB4 LINE L1 5250 5739 -441 591 15 0 0 chr6 3163170 3163238 -179252004 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1465 147 9 0 chr6 3163239 3163463 -179251779 - AluSp SINE Alu 0 313 88 4187 175 45 38 chr6 3163463 3163710 -179251532 + L1MB4 LINE L1 5739 6029 -151 1940 130 51 0 chr6 3163710 3164002 -179251240 - AluSx SINE Alu -5 307 1 4187 175 45 38 chr6 3164002 3164156 -179251086 + L1MB4 LINE L1 6029 6180 0 282 271 97 7 chr6 3165439 3165583 -179249659 - L1MD1 LINE L1 -87 6155 5999 247 86 0 0 chr6 3165660 3165695 -179249547 - tRNA-Gly-GGG tRNA tRNA -39 35 1 305 237 32 11 chr6 3165704 3165797 -179249445 - L1MD1 LINE L1 -456 5903 5809 258 145 13 64 chr6 3165988 3166152 -179249090 + (CGGGG)n Simple_repeat Simple_repeat 1 155 0 184 286 20 0 chr6 3166646 3166695 -179248547 - MIR SINE MIR -88 174 125 2311 72 14 3 chr6 3166885 3167178 -179248064 - AluSg SINE Alu -14 296 1 1662 113 4 4 chr6 3167181 3167411 -179247831 - AluSg/x SINE Alu -8 302 73 2363 102 16 3 chr6 3167422 3167727 -179247515 - AluSq SINE Alu -4 309 1 2213 130 0 3 chr6 3168651 3168950 -179246292 - AluSx SINE Alu -13 299 2 288 352 56 28 chr6 3168958 3169137 -179246105 + L2 LINE L2 2718 2901 -413 278 214 0 0 chr6 3169138 3169194 -179246048 - AluJo SINE Alu 0 302 247 1116 163 6 12 chr6 3169195 3169367 -179245875 - AluJo SINE Alu -112 200 30 244 283 85 109 chr6 3170275 3170568 -179244674 - MLT1J LTR MaLR -127 384 99 240 228 0 0 chr6 3171148 3171205 -179244037 - L1MB2 LINE L1 0 6171 6115 1589 84 0 0 chr6 3171246 3171436 -179243806 - AluSx SINE Alu -122 190 1 1890 202 45 23 chr6 3171472 3171971 -179243271 - L1M3 LINE L1 -410 5773 5266 311 265 29 20 chr6 3172160 3172262 -179242980 - MIR SINE MIR -66 142 40 554 191 0 0 chr6 3172929 3173018 -179242224 - FLAM SINE Alu -15 128 40 245 321 24 73 chr6 3173091 3173256 -179241986 + L2 LINE L2 3138 3294 -19 1046 200 5 23 chr6 3173446 3173666 -179241576 - MER20 DNA MER1_type -3 216 1 2316 92 23 3 chr6 3174477 3174782 -179240460 + AluSp SINE Alu 1 311 -2 1203 130 0 6 chr6 3174809 3174971 -179240271 + AluSx SINE Alu 1 161 -151 3953 109 11 11 chr6 3175007 3175623 -179239619 - MER11C LTR ERVK -14 1057 442 5348 175 55 15 chr6 3175734 3177433 -179237809 + L1M3f LINE L1 269 2035 -4065 368 288 137 7 chr6 3177445 3177591 -179237651 + MIR SINE MIR 81 245 -17 2832 16 0 0 chr6 3178179 3178487 -179236755 - AluY SINE Alu -3 308 1 543 274 105 11 chr6 3179962 3180152 -179235090 - MIR SINE MIR -8 254 47 302 289 114 0 chr6 3180964 3181078 -179234164 - L2 LINE L2 -1 3312 3186 2388 103 0 0 chr6 3181381 3181683 -179233559 + AluSx SINE Alu 1 302 -10 357 145 0 0 chr6 3182253 3182315 -179232927 + (CA)n Simple_repeat Simple_repeat 1 62 0 308 289 10 39 chr6 3183093 3183197 -179232045 - L1MB2 LINE L1 -2453 5355 5255 401 241 145 48 chr6 3183228 3183456 -179231786 - L1MB2 LINE L1 -1686 4460 4211 2116 113 7 0 chr6 3183457 3183770 -179231472 + AluSx SINE Alu 1 315 0 618 259 86 100 chr6 3184069 3184489 -179230753 - L1ME4a LINE L1 0 6121 5708 3183 169 7 4 chr6 3185012 3185575 -179229667 - L1PA16 LINE L1 -3 6163 5599 880 174 0 7 chr6 3185711 3185855 -179229387 - FLAM_C SINE Alu 0 143 1 338 264 75 69 chr6 3185859 3186018 -179229224 - L1MB2 LINE L1 -3828 2318 2159 1492 135 39 143 chr6 3186105 3186207 -179229035 + MER7A DNA MER2_type 3 114 -2924 1593 173 60 7 chr6 3186207 3186490 -179228752 - AluJo SINE Alu -12 300 3 1492 135 39 143 chr6 3186490 3186771 -179228471 + MER7A DNA MER2_type 114 344 -2 494 70 0 56 chr6 3186786 3186857 -179228385 + Alu SINE Alu 5 71 -239 379 240 142 49 chr6 3186877 3187081 -179228161 - L1 LINE L1 -1713 4433 4211 2088 75 68 4 chr6 3187082 3187363 -179227879 + AluY SINE Alu 1 299 -12 1812 168 7 21 chr6 3187368 3187659 -179227583 + AluJo SINE Alu 1 287 -25 1688 190 7 7 chr6 3187660 3187965 -179227277 + AluJb SINE Alu 1 305 -7 2376 66 17 0 chr6 3189638 3189925 -179225317 - AluSp SINE Alu -21 292 1 2206 81 3 14 chr6 3190467 3190750 -179224492 + AluSx SINE Alu 22 301 -11 226 206 63 16 chr6 3190753 3190816 -179224426 - MIR SINE MIR -162 100 35 752 310 114 34 chr6 3190896 3191429 -179223813 + MLT1K LTR MaLR 12 587 -1 349 267 44 0 chr6 3191684 3191774 -179223468 + MIR SINE MIR 55 148 -60 376 305 58 0 chr6 3192138 3192292 -179222950 - MIR SINE MIR -87 175 13 311 329 29 7 chr6 3192456 3192596 -179222646 + L1MEd LINE L1 300 442 -5974 4415 165 31 43 chr6 3192750 3193951 -179221291 + pTR5 LTR ERV1 6 2438 0 437 320 59 15 chr6 3194145 3194417 -179220825 + L1MEd LINE L1 854 1137 -5279 1833 171 10 3 chr6 3194513 3194812 -179220430 + AluJo SINE Alu 1 301 -11 333 250 167 36 chr6 3194932 3195100 -179220142 + L1MEd LINE L1 2178 2367 -4059 697 317 59 15 chr6 3195130 3195595 -179219647 + L1MEd LINE L1 2401 2889 -3537 2330 80 7 0 chr6 3195595 3195882 -179219360 + AluSp SINE Alu 1 289 -24 697 317 59 15 chr6 3195882 3195893 -179219349 + L1MEd LINE L1 2889 2898 -3528 248 231 26 39 chr6 3195938 3196016 -179219226 + L1ME3A LINE L1 5482 5558 -608 329 321 120 55 chr6 3196061 3196335 -179218907 + L1ME3A LINE L1 5799 6090 -80 1829 183 0 14 chr6 3196452 3196747 -179218495 + AluJo SINE Alu 1 291 -21 670 88 22 0 chr6 3197117 3197208 -179218034 - AluJb SINE Alu -15 297 205 812 161 0 29 chr6 3198811 3198948 -179216294 + FLAM_C SINE Alu 1 133 0 963 198 19 14 chr6 3199037 3199244 -179215998 - MLT1A1 LTR MaLR 0 365 158 1072 150 0 53 chr6 3199244 3199431 -179215811 - AluJo SINE Alu -135 177 1 1485 239 23 47 chr6 3199471 3199898 -179215344 + MLT1C LTR MaLR 1 417 -50 472 106 9 50 chr6 3199931 3200025 -179215217 + L1MDa LINE L1 1217 1304 -5236 1686 171 7 10 chr6 3200025 3200330 -179214912 + AluJo SINE Alu 1 304 -8 472 106 9 50 chr6 3200330 3200382 -179214860 + L1MDa LINE L1 1304 1357 -5183 * 624 207 41 12 chr6 3200381 3200550 -179214692 + L1MDa LINE L1 1644 1817 -4723 2341 242 57 7 chr6 3200553 3200611 -179214631 + L1MDa LINE L1 2952 3006 -3534 2387 149 16 71 chr6 3200611 3201062 -179214180 + MSTB LTR MaLR 1 426 0 2341 242 57 7 chr6 3201062 3201752 -179213490 + L1MDa LINE L1 3006 3738 -2802 2442 122 100 5 chr6 3201767 3202176 -179213066 + MER83 LTR ERV1 1 448 0 9622 179 22 42 chr6 3202200 3204030 -179211212 + MER83-int LTR ERV1 22 1815 -2470 2109 174 14 68 chr6 3203999 3204082 -179211160 + MER83-int LTR ERV1 4373 4459 -1487 * 1853 36 5 0 chr6 3204082 3204304 -179210938 - L1PA4 LINE L1 -8 6147 5925 2109 174 14 68 chr6 3204304 3204708 -179210534 + MER83-int LTR ERV1 4459 4834 -1112 1646 176 37 3 chr6 3204861 3205157 -179210085 + AluJb SINE Alu 1 306 -6 3315 145 59 66 chr6 3205157 3205848 -179209394 + MER83-int LTR ERV1 5365 6204 -394 2329 44 40 7 chr6 3205848 3206145 -179209097 + AluY SINE Alu 3 309 -2 3315 145 59 66 chr6 3206145 3206197 -179209045 + MER83-int LTR ERV1 6204 6255 -343 445 151 118 132 chr6 3206232 3206384 -179208858 + MER83-int LTR ERV1 5924 6073 -258 * 2109 141 62 25 chr6 3206379 3206733 -179208509 + MER83-int LTR ERV1 2663 3029 -1256 * 2138 175 17 62 chr6 3206726 3207144 -179208098 + MER83-int LTR ERV1 3876 4274 -11 2390 130 78 53 chr6 3207145 3207518 -179207724 + MER83 LTR ERV1 1 388 -60 2210 86 3 0 chr6 3207518 3207809 -179207433 - AluSp SINE Alu -21 292 1 2390 130 78 53 chr6 3207809 3207872 -179207370 + MER83 LTR ERV1 388 448 0 1196 232 58 35 chr6 3207903 3208334 -179206908 + L1MDa LINE L1 3779 4219 -2321 1893 130 7 33 chr6 3208351 3208652 -179206590 + AluSx SINE Alu 1 293 -19 652 235 36 41 chr6 3208686 3208907 -179206335 + L1MDa LINE L1 4158 4377 -2163 226 53 0 0 chr6 3208912 3208950 -179206292 - AluJo SINE Alu 0 302 265 800 119 8 0 chr6 3208950 3209068 -179206174 - AluSq/x SINE Alu -193 119 1 1956 219 96 57 chr6 3209129 3209310 -179205932 + L1MDa LINE L1 4455 4627 -1913 2309 90 0 0 chr6 3209310 3209622 -179205620 + AluSq SINE Alu 1 312 -1 1956 219 96 57 chr6 3209622 3210212 -179205030 + L1MDa LINE L1 4627 5256 -1284 231 36 0 0 chr6 3210233 3210261 -179204981 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1538 169 22 0 chr6 3210264 3210531 -179204711 - AluJo SINE Alu -32 280 8 2317 235 17 26 chr6 3212046 3212697 -179202545 - L1M4 LINE L1 -1748 4398 3754 2203 93 23 0 chr6 3212747 3213049 -179202193 + AluSc SINE Alu 1 309 0 1739 157 14 3 chr6 3213221 3213514 -179201728 - AluJo SINE Alu -16 296 1 1717 216 176 7 chr6 3215066 3215640 -179199602 - L1M4 LINE L1 -1612 4534 3864 886 174 0 0 chr6 3215644 3215788 -179199454 + FAM SINE Alu 5 148 -37 1998 117 0 0 chr6 3215820 3216127 -179199115 - AluSx SINE Alu 0 307 1 298 270 92 116 chr6 3216750 3217043 -179198199 + MLT1J LTR MaLR 99 384 -127 214 211 28 37 chr6 3219009 3219118 -179196124 + (CACGC)n Simple_repeat Simple_repeat 1 108 0 2072 88 37 3 chr6 3219217 3219511 -179195731 + AluSx SINE Alu 1 304 -8 298 264 94 26 chr6 3219619 3219921 -179195321 + L1MD1 LINE L1 5815 6156 -86 2888 48 3 0 chr6 3220032 3220384 -179194858 + LTR5 LTR ERVK 1 353 -616 3139 31 0 0 chr6 3220384 3220741 -179194501 + HERVK LTR ERVK 4787 5143 -2100 2225 35 6 99 chr6 3221533 3221876 -179193366 - AluY SINE Alu 0 311 1 1384 231 24 11 chr6 3222419 3222594 -179192648 - L1MB4 LINE L1 -1 6179 6005 2276 205 53 37 chr6 3222594 3223676 -179191566 - L1MC4 LINE L1 -461 5719 4863 274 131 229 0 chr6 3223687 3223748 -179191494 - L1M4c LINE L1 -4858 1526 1452 14424 126 40 18 chr6 3223751 3225199 -179190043 + Tigger1 DNA MER2_type 1 1416 -1002 2023 102 0 0 chr6 3225199 3225543 -179189699 + AluSq SINE Alu 1 344 0 14424 126 40 18 chr6 3225543 3225956 -179189286 + Tigger1 DNA MER2_type 1416 1818 -600 2250 105 0 0 chr6 3225956 3226262 -179188980 + AluSx SINE Alu 1 306 -6 14424 126 40 18 chr6 3226262 3226441 -179188801 + Tigger1 DNA MER2_type 1818 1992 -426 2433 57 0 0 chr6 3226441 3226740 -179188502 + AluY SINE Alu 1 299 -12 14424 126 40 18 chr6 3226740 3227062 -179188180 + Tigger1 DNA MER2_type 1992 2418 0 2715 168 14 89 chr6 3227062 3227757 -179187485 + L1MB8 LINE L1 5531 6173 -5 28 0 0 0 chr6 3227757 3227785 -179187457 + AT_rich Low_complexity Low_complexity 1 28 0 2165 101 7 0 chr6 3227785 3228091 -179187151 - AluSg SINE Alu -2 308 1 662 218 70 0 chr6 3228101 3228243 -179186999 + MER96 DNA MER1_type? 23 174 -1 2439 24 0 70 chr6 3230193 3230524 -179184718 + AluY SINE Alu 1 308 -3 408 203 123 123 chr6 3231213 3231261 -179183981 + L2 LINE L2 3176 3223 -90 1981 119 34 0 chr6 3231261 3231556 -179183686 - AluSx SINE Alu -7 305 1 408 203 123 123 chr6 3231556 3231645 -179183597 + L2 LINE L2 3222 3313 0 183 357 71 12 chr6 3231652 3231736 -179183506 + L2 LINE L2 3180 3268 -4 4489 165 70 64 chr6 3231772 3232913 -179182329 - L1MC2 LINE L1 -1 6343 5199 2292 82 0 3 chr6 3232973 3233276 -179181966 - AluSq SINE Alu -11 302 1 23 33 0 0 chr6 3233284 3233314 -179181928 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr6 3234154 3234188 -179181054 + GC_rich Low_complexity Low_complexity 1 34 0 2044 99 10 3 chr6 3234963 3235265 -179179977 + AluSx SINE Alu 2 305 -7 1883 132 18 0 chr6 3235677 3235958 -179179284 - AluSg SINE Alu -19 291 6 216 368 58 0 chr6 3236176 3236263 -179178979 + MIR SINE MIR 88 179 -83 348 179 64 26 chr6 3236397 3236475 -179178767 - MLT1L LTR MaLR -532 83 3 402 233 89 33 chr6 3237459 3237639 -179177603 - L1ME4a LINE L1 -6 6115 5926 251 226 52 70 chr6 3237674 3237789 -179177453 - L1ME4a LINE L1 -284 5837 5725 199 218 164 18 chr6 3237833 3237888 -179177354 - L2 LINE L2 -52 3220 3158 310 263 11 63 chr6 3238330 3238425 -179176817 - L1MC4 LINE L1 -1339 6703 6614 * 335 243 0 107 chr6 3238368 3238471 -179176771 + L1MC4 LINE L1 6614 6705 -1337 249 147 29 15 chr6 3238472 3238540 -179176702 + (TA)n Simple_repeat Simple_repeat 2 70 0 512 226 178 0 chr6 3238559 3238705 -179176537 - MIR SINE MIR -70 192 21 1788 206 90 25 chr6 3239323 3239812 -179175430 - L1ME2 LINE L1 -53 6111 5591 2281 82 0 19 chr6 3239896 3240212 -179175030 - AluSg SINE Alu 0 310 1 734 232 12 4 chr6 3240319 3240517 -179174725 - L1ME4a LINE L1 -541 5625 5425 543 265 151 62 chr6 3240698 3241169 -179174073 - L1MEd LINE L1 -5250 869 357 373 309 20 7 chr6 3241317 3241469 -179173773 - L1MEd LINE L1 -5960 159 6 1794 144 0 39 chr6 3241619 3241931 -179173311 + AluJo SINE Alu 2 301 -11 243 0 0 0 chr6 3241932 3241959 -179173283 + (TA)n Simple_repeat Simple_repeat 1 27 0 207 88 0 0 chr6 3242760 3242794 -179172448 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 774 145 0 0 chr6 3243293 3243410 -179171832 - FLAM_A SINE Alu -6 136 20 641 171 77 0 chr6 3243457 3243574 -179171668 + AluJb SINE Alu 5 130 -182 23 33 0 0 chr6 3243915 3243945 -179171297 + AT_rich Low_complexity Low_complexity 1 30 0 1022 173 0 18 chr6 3244141 3244309 -179170933 - FRAM SINE Alu -1 165 1 2028 107 3 0 chr6 3244321 3244610 -179170632 - AluSg SINE Alu -20 290 1 271 231 249 72 chr6 3244638 3244859 -179170383 - L2 LINE L2 -177 3095 2836 470 51 17 0 chr6 3245071 3245130 -179170112 - 5S rRNA rRNA -29 92 33 225 281 271 0 chr6 3245860 3245956 -179169286 - L2 LINE L2 0 3313 3192 2401 80 3 0 chr6 3246811 3247123 -179168119 + AluSp SINE Alu 1 313 0 430 259 36 27 chr6 3248534 3248646 -179166596 + L2 LINE L2 3201 3313 0 209 295 64 26 chr6 3248829 3248907 -179166335 - L2 LINE L2 -2 3311 3231 553 325 135 43 chr6 3248973 3249824 -179165418 + L2 LINE L2 2165 3113 -159 2201 113 0 0 chr6 3249824 3250124 -179165118 - AluSc SINE Alu -9 300 1 553 325 135 43 chr6 3250124 3250211 -179165031 + L2 LINE L2 3113 3191 -81 1729 149 17 13 chr6 3250856 3250868 -179164374 - L1MB3 LINE L1 -153 6030 6020 435 179 0 11 chr6 3250868 3250963 -179164279 - L1MB3 LINE L1 -2 6181 6088 1729 149 17 13 chr6 3250963 3251251 -179163991 - L1MB3 LINE L1 -163 6020 5729 1475 193 56 3 chr6 3251375 3251681 -179163561 - L1MB3 LINE L1 -430 5812 5491 1953 241 82 29 chr6 3251697 3252223 -179163019 - MER21B LTR ERV1 -270 593 40 503 151 0 0 chr6 3252233 3252319 -179162923 - L1MDa LINE L1 -4482 2058 1973 4403 206 109 113 chr6 3252323 3252792 -179162450 - L1MDa LINE L1 -4745 1795 1326 2090 65 61 0 chr6 3252792 3253070 -179162172 - AluY SINE Alu -16 295 1 4403 206 109 113 chr6 3253070 3253952 -179161290 - L1MDa LINE L1 -5214 1326 361 629 167 0 0 chr6 3253952 3254042 -179161200 - 5S rRNA rRNA -31 90 1 4403 206 109 113 chr6 3254042 3254402 -179160840 - L1MDa LINE L1 -6179 361 1 22 70 0 0 chr6 3254751 3254794 -179160448 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 3255628 3255649 -179159593 + AT_rich Low_complexity Low_complexity 1 21 0 850 276 15 15 chr6 3255652 3255993 -179159249 + L1MC/D LINE L1 2337 2677 -3469 763 264 113 27 chr6 3258888 3259218 -179156024 + L1MC/D LINE L1 2688 3081 -3065 180 0 0 0 chr6 3259218 3259238 -179156004 + (TA)n Simple_repeat Simple_repeat 2 21 0 763 264 113 27 chr6 3259238 3259430 -179155812 + L1MC/D LINE L1 3081 3255 -2891 1381 186 29 14 chr6 3259441 3259716 -179155526 + AluJo SINE Alu 25 303 -9 1740 287 80 27 chr6 3259716 3260484 -179154758 + L1MC/D LINE L1 3245 4074 -2072 1732 161 28 3 chr6 3260484 3260775 -179154467 - AluJb SINE Alu -14 298 1 1740 287 80 27 chr6 3260775 3260962 -179154280 + L1MC/D LINE L1 4074 4250 -1896 459 244 65 30 chr6 3260986 3261187 -179154055 + L1MC/D LINE L1 4402 4609 -1537 2256 101 0 0 chr6 3261188 3261496 -179153746 - AluY SINE Alu -3 308 1 2083 102 0 0 chr6 3261501 3261808 -179153434 - AluSx SINE Alu 0 307 1 1242 270 49 36 chr6 3261858 3262388 -179152854 + L1MC/D LINE L1 4621 5157 -989 35 41 0 0 chr6 3262429 3262478 -179152764 + AT_rich Low_complexity Low_complexity 1 49 0 501 267 53 25 chr6 3262508 3262551 -179152691 + L1MC/D LINE L1 5156 5196 -1001 1395 156 84 11 chr6 3262551 3262837 -179152405 + AluJo SINE Alu 1 305 0 501 267 53 25 chr6 3262837 3263088 -179152154 + L1MC/D LINE L1 5196 5471 -726 417 314 69 5 chr6 3263116 3263320 -179151922 + L1MC4a LINE L1 4491 4707 -1439 358 251 81 8 chr6 3263374 3263716 -179151526 - LTR16A LTR ERVL -2 448 1 615 298 133 29 chr6 3263854 3263900 -179151342 + L1MC4a LINE L1 5258 5298 -823 2381 77 0 0 chr6 3263900 3264211 -179151031 + AluY SINE Alu 1 311 0 615 298 133 29 chr6 3264211 3264765 -179150477 + L1MC4a LINE L1 5298 5545 -576 1775 146 3 11 chr6 3264777 3265064 -179150178 + AluSx SINE Alu 1 285 -27 2134 106 7 7 chr6 3265229 3265530 -179149712 - AluSx SINE Alu -11 301 1 22 88 0 0 chr6 3265573 3265630 -179149612 + AT_rich Low_complexity Low_complexity 1 57 0 1297 164 126 0 chr6 3265642 3265911 -179149331 + AluJb SINE Alu 1 303 -9 867 209 0 17 chr6 3265946 3266123 -179149119 + FRAM SINE Alu 1 174 -2 267 225 152 29 chr6 3266268 3266406 -179148836 + L1ME4a LINE L1 5964 6118 -3 2727 175 50 27 chr6 3266407 3266796 -179148446 - L1MB4 LINE L1 0 6180 5802 2019 129 31 20 chr6 3266796 3267153 -179148089 + MER46B DNA MER2_type 1 236 0 2727 175 50 27 chr6 3267153 3267243 -179147999 - L1MB4 LINE L1 -378 5802 5716 1990 86 31 14 chr6 3267243 3267533 -179147709 - AluSx SINE Alu -17 295 1 2727 175 50 27 chr6 3267533 3267924 -179147318 - L1MB4 LINE L1 -464 5716 5336 1727 136 0 14 chr6 3267924 3268204 -179147038 - AluSx SINE Alu -1 311 36 2727 175 50 27 chr6 3268204 3268718 -179146524 - L1MB4 LINE L1 -844 5336 4669 369 368 12 6 chr6 3269190 3269361 -179145881 - L2 LINE L2 -1673 1641 1470 293 242 182 15 chr6 3269359 3269491 -179145751 + MIR SINE MIR 69 222 -40 * 2096 101 21 0 chr6 3269502 3269789 -179145453 - AluSx SINE Alu -19 293 1 2109 120 0 3 chr6 3271606 3271905 -179143337 + AluSx SINE Alu 1 298 -14 2142 86 6 32 chr6 3271912 3272225 -179143017 + AluSg SINE Alu 1 305 -5 351 256 26 51 chr6 3272238 3272355 -179142887 - L2 LINE L2 -31 3282 3169 451 305 73 11 chr6 3272836 3273013 -179142229 + MIR3 SINE MIR 20 207 -1 223 222 111 74 chr6 3273204 3273285 -179141957 + MIR SINE MIR 179 262 0 250 304 82 44 chr6 3273698 3273833 -179141409 - L2 LINE L2 -4 3309 3170 3677 164 37 17 chr6 3274263 3274842 -179140400 - L1MB3 LINE L1 0 6183 5585 2258 79 7 7 chr6 3274842 3275145 -179140097 - AluSx SINE Alu -9 303 1 3677 164 37 17 chr6 3275145 3275290 -179139952 - L1MB3 LINE L1 -598 5585 5444 554 243 35 7 chr6 3275741 3275885 -179139357 + MIR SINE MIR 105 252 -10 1046 216 25 0 chr6 3276159 3276363 -179138879 - MER58A DNA MER1_type -15 209 1 353 263 0 114 chr6 3277101 3277166 -179138076 + MER91A DNA MER1_type 88 136 -60 1784 148 3 29 chr6 3277166 3277476 -179137766 - AluJo SINE Alu -10 302 1 353 263 0 114 chr6 3277476 3277524 -179137718 + MER91A DNA MER1_type 136 188 -8 746 141 8 8 chr6 3278140 3278261 -179136981 - FLAM_C SINE Alu -21 122 2 905 167 51 65 chr6 3279327 3279543 -179135699 - MER20 DNA MER1_type 0 219 7 21 0 0 0 chr6 3279798 3279819 -179135423 + AT_rich Low_complexity Low_complexity 1 21 0 1380 176 0 12 chr6 3280566 3280811 -179134431 + AluJo SINE Alu 1 242 -70 470 269 57 14 chr6 3280983 3281124 -179134118 + MIR SINE MIR 72 218 -44 2251 95 0 0 chr6 3281210 3281504 -179133738 + AluSq SINE Alu 2 295 -18 3771 173 30 12 chr6 3282131 3282855 -179132387 - L1MB3 LINE L1 -5 6178 5442 246 186 29 88 chr6 3283221 3283323 -179131919 + (CGGGG)n Simple_repeat Simple_repeat 2 97 0 198 339 121 16 chr6 3283744 3283868 -179131374 - MIR3 SINE MIR -52 156 20 362 292 53 0 chr6 3284000 3284113 -179131129 - MER5A DNA MER1_type -7 182 64 2104 95 7 3 chr6 3284676 3284972 -179130270 - AluSq SINE Alu -16 297 1 263 208 47 36 chr6 3285583 3285716 -179129526 + MIR SINE MIR 36 206 -56 1960 116 0 58 chr6 3285926 3286254 -179128988 - AluSc SINE Alu 0 309 1 2235 68 0 3 chr6 3286655 3286947 -179128295 + AluY SINE Alu 21 311 0 1717 118 45 0 chr6 3287981 3288268 -179126974 - L1MA5A LINE L1 0 6297 5998 417 243 0 0 chr6 3288715 3288789 -179126453 + MER81 DNA DNA 3 76 -38 2075 156 9 0 chr6 3289089 3289422 -179125820 + MER2 DNA MER2_type 10 345 0 2027 115 14 0 chr6 3289687 3289982 -179125260 - AluSx SINE Alu -13 299 1 23 0 0 0 chr6 3290882 3290905 -179124337 + AT_rich Low_complexity Low_complexity 1 23 0 869 175 0 12 chr6 3291224 3291390 -179123852 - AluSc SINE Alu -11 298 135 1878 81 7 61 chr6 3291393 3291689 -179123553 - AluSx SINE Alu -13 299 20 399 263 101 86 chr6 3292127 3292458 -179122784 - L1ME4a LINE L1 -3 6118 5778 2158 117 0 0 chr6 3292458 3292756 -179122486 - AluSg SINE Alu -12 298 1 399 263 101 86 chr6 3292756 3292842 -179122400 - L1ME4a LINE L1 -343 5778 5695 243 322 166 5 chr6 3292839 3293038 -179122204 - L1ME LINE L1 -405 5765 5535 * 809 188 0 7 chr6 3294165 3294303 -179120939 + AluJb SINE Alu 137 273 -39 2080 110 3 3 chr6 3294443 3294744 -179120498 - AluSp SINE Alu -12 301 1 624 168 0 34 chr6 3295241 3295360 -179119882 + MER58 DNA MER1_type 2305 2419 -1 242 303 122 45 chr6 3295590 3295966 -179119276 + L2 LINE L2 1537 1941 -1373 1798 149 3 19 chr6 3297188 3297503 -179117739 + AluJb SINE Alu 3 312 0 664 281 86 34 chr6 3298426 3298750 -179116492 - L1ME4a LINE L1 -467 5695 5355 1827 143 6 19 chr6 3299066 3299241 -179116001 - AluJb SINE Alu -2 310 139 2404 50 10 0 chr6 3299241 3299539 -179115703 - AluY SINE Alu -10 301 1 1827 143 6 19 chr6 3299539 3299677 -179115565 - AluJb SINE Alu -173 139 1 309 277 53 34 chr6 3299968 3300256 -179114986 - L1MEc LINE L1 -4819 1651 1268 369 345 0 9 chr6 3300277 3300387 -179114855 - L1MEc LINE L1 -5030 1342 1234 339 327 19 31 chr6 3300392 3300554 -179114688 - L1MEc LINE L1 -5398 974 815 268 213 110 39 chr6 3301680 3301807 -179113435 - L2 LINE L2 -1 3271 3136 1971 137 7 10 chr6 3302663 3302955 -179112287 - AluSc SINE Alu -18 291 1 377 301 98 45 chr6 3303640 3303886 -179111356 + MIR SINE MIR 4 262 0 186 265 29 15 chr6 3303957 3304025 -179111217 + MIR SINE MIR 193 261 -1 211 319 118 0 chr6 3304320 3304455 -179110787 - MIR SINE MIR -70 192 42 320 287 10 0 chr6 3304852 3304953 -179110289 - MIR3 SINE MIR -12 196 95 2195 103 0 10 chr6 3306013 3306305 -179108937 - AluSc SINE Alu -20 289 1 199 316 92 26 chr6 3306394 3306546 -179108696 - MIR SINE MIR -44 218 57 2054 107 4 4 chr6 3306838 3307135 -179108107 + AluSq SINE Alu 14 310 0 747 235 39 0 chr6 3307518 3307697 -179107545 - MLT1B LTR MaLR -204 186 1 2437 85 7 0 chr6 3307950 3308255 -179106987 - AluY SINE Alu -4 307 1 2102 132 6 28 chr6 3308261 3308580 -179106662 - AluJo SINE Alu 0 312 1 200 263 7 0 chr6 3308976 3309128 -179106114 + (TTCGGG)n Simple_repeat Simple_repeat 6 158 0 213 252 0 0 chr6 3309172 3309307 -179105935 + (TTCGGG)n Simple_repeat Simple_repeat 6 140 0 496 278 10 0 chr6 3309333 3310070 -179105172 + (TTCGGG)n Simple_repeat Simple_repeat 1 744 0 371 277 9 0 chr6 3310116 3310594 -179104648 + (TTCGGG)n Simple_repeat Simple_repeat 1 482 0 471 284 18 0 chr6 3310674 3310843 -179104399 + (TTCGGG)n Simple_repeat Simple_repeat 5 176 0 214 303 30 20 chr6 3310875 3310974 -179104268 + MIR SINE MIR 105 204 -58 1289 186 5 0 chr6 3311005 3311226 -179104016 + AluJb SINE Alu 85 306 -6 814 183 0 20 chr6 3311364 3311517 -179103725 - FRAM SINE Alu -4 172 23 1926 196 21 75 chr6 3311548 3312068 -179103174 - MLT2B1 LTR ERVL -11 509 18 551 278 24 24 chr6 3312941 3313110 -179102132 - MIR SINE MIR 0 262 94 2181 100 14 0 chr6 3313568 3313870 -179101372 - AluSx SINE Alu 0 306 1 186 227 0 0 chr6 3314807 3314851 -179100391 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1915 164 9 25 chr6 3316686 3317003 -179098239 + AluJo SINE Alu 1 312 0 538 274 0 0 chr6 3320995 3321119 -179094123 + FLAM_A SINE Alu 1 124 -9 553 307 64 86 chr6 3321122 3321154 -179094088 - MER92A LTR ERV1 -14 398 367 2478 79 7 0 chr6 3321154 3321459 -179093783 + AluSp SINE Alu 5 311 -2 553 307 64 86 chr6 3321459 3321833 -179093409 - MER92A LTR ERV1 -45 367 1 3210 137 6 4 chr6 3322980 3323493 -179091749 - MER75 DNA T2_type 0 514 1 707 360 45 11 chr6 3324263 3324549 -179090693 + MER115 DNA AcHobo 89 384 -309 812 263 105 25 chr6 3324549 3324834 -179090408 + MER77 LTR ERV1 290 597 -8 1369 267 68 32 chr6 3324918 3325390 -179089852 + MER77-int LTR ERV1 2 490 -3701 * 1520 241 23 66 chr6 3325380 3325554 -179089688 + MER77-int LTR ERV1 1218 1398 -2793 2395 116 0 0 chr6 3325554 3325864 -179089378 - AluSx SINE Alu -2 310 1 1520 241 23 66 chr6 3325864 3326128 -179089114 + MER77-int LTR ERV1 1398 1637 -2554 5282 231 50 28 chr6 3326207 3327540 -179087702 + MER77-int LTR ERV1 1631 2993 -1198 641 96 0 0 chr6 3327857 3327951 -179087291 - AluSx SINE Alu -10 302 209 2222 95 7 0 chr6 3328559 3328843 -179086399 - AluSx SINE Alu -22 290 5 4375 170 49 14 chr6 3329310 3330144 -179085098 - MER21B LTR ERV1 0 863 1 1716 129 16 150 chr6 3330575 3331063 -179084179 + MER4A LTR ERV1 1 423 -241 549 255 13 20 chr6 3331075 3331224 -179084018 + MER4C LTR ERV1 276 423 -42 296 250 13 26 chr6 3331221 3331297 -179083945 + MER4C LTR ERV1 389 463 -2 * 726 103 0 8 chr6 3331381 3331498 -179083744 - AluSp/q SINE Alu 0 313 198 1578 97 141 7 chr6 3331498 3331767 -179083475 + LTR7 LTR ERV1 9 313 -137 15701 160 16 32 chr6 3331767 3335036 -179080206 + HERVH LTR ERV1 982 4232 -2297 4661 132 173 23 chr6 3335044 3336409 -179078833 + pTR5 LTR ERV1 740 2438 0 6295 106 9 2 chr6 3336413 3337322 -179077920 + HERVH LTR ERV1 4235 5149 -2564 1352 146 0 0 chr6 3337323 3337543 -179077699 + HERVH LTR ERV1 5600 5819 -1894 * 2146 87 82 14 chr6 3337541 3337908 -179077334 + HERVH LTR ERV1 7322 7713 0 2621 83 95 5 chr6 3337908 3338319 -179076923 + LTR7 LTR ERV1 1 448 -2 1663 101 5 0 chr6 3338321 3338529 -179076713 - AluSx SINE Alu -103 209 1 953 213 0 0 chr6 3338534 3338703 -179076539 - FRAM SINE Alu -7 169 1 2492 90 0 0 chr6 3338844 3339154 -179076088 + AluY SINE Alu 1 310 -1 245 297 14 0 chr6 3339176 3339250 -179075992 - L3 LINE CR1 -75 1502 1428 485 271 39 54 chr6 3339278 3339481 -179075761 - MIR SINE MIR -50 212 13 254 164 36 36 chr6 3339482 3339537 -179075705 + MLT1E3 LTR MaLR 1 55 -569 3011 125 57 13 chr6 3339537 3340126 -179075116 - MER4B LTR ERV1 0 779 1 1354 243 54 60 chr6 3340126 3340648 -179074594 + MLT1E3 LTR MaLR 52 652 -2 377 309 62 16 chr6 3340674 3340917 -179074325 - LTR16C LTR ERVL -5 486 233 2282 123 0 0 chr6 3342209 3342517 -179072725 - AluSx SINE Alu -4 308 1 333 47 0 0 chr6 3342789 3342832 -179072410 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2018 67 0 31 chr6 3342832 3343087 -179072155 - AluY SINE Alu -26 285 39 2385 59 0 0 chr6 3343628 3343900 -179071342 + AluY SINE Alu 1 272 -39 185 156 0 22 chr6 3345359 3345404 -179069838 + (CCCCAG)n Simple_repeat Simple_repeat 3 46 0 342 0 0 0 chr6 3346341 3346379 -179068863 + (TG)n Simple_repeat Simple_repeat 2 39 0 742 241 14 14 chr6 3346489 3346696 -179068546 + MER33 DNA MER1_type 5 211 -113 204 282 167 0 chr6 3346787 3346865 -179068377 - MIR SINE MIR -99 163 73 2507 62 0 3 chr6 3347151 3347455 -179067787 + AluY SINE Alu 1 303 -8 23 0 0 0 chr6 3349375 3349398 -179065844 + AT_rich Low_complexity Low_complexity 1 23 0 1460 141 38 0 chr6 3349568 3349781 -179065461 - AluSg/x SINE Alu -14 298 78 942 248 56 0 chr6 3350274 3350508 -179064734 + MIR SINE MIR 15 261 -1 268 123 0 35 chr6 3350524 3350581 -179064661 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 23 0 0 0 chr6 3351086 3351109 -179064133 + GC_rich Low_complexity Low_complexity 1 23 0 327 253 84 65 chr6 3451307 3451461 -178963781 - L1ME4a LINE L1 -38 6083 5927 270 262 64 78 chr6 3452391 3452532 -178962710 + L2 LINE L2 3099 3237 -76 451 209 147 63 chr6 3454450 3454641 -178960601 + MER112 DNA MER1_type 53 259 -1 1091 203 48 73 chr6 3454646 3454976 -178960266 + MER58B DNA MER1_type 4 325 -16 585 199 0 0 chr6 3456598 3456769 -178958473 + (CA)n Simple_repeat Simple_repeat 2 172 0 323 296 0 0 chr6 3456787 3456885 -178958357 + (CA)n Simple_repeat Simple_repeat 1 98 0 238 125 0 47 chr6 3460416 3460480 -178954762 + (AGGGGG)n Simple_repeat Simple_repeat 3 63 0 208 247 43 54 chr6 3461263 3461356 -178953886 - MIR SINE MIR -46 216 125 252 0 0 0 chr6 3461539 3461567 -178953675 + (A)n Simple_repeat Simple_repeat 1 28 0 184 274 55 27 chr6 3462069 3462142 -178953100 + L2 LINE L2 3149 3223 -49 3494 181 9 12 chr6 3462564 3463229 -178952013 + L1MB1 LINE L1 5505 6167 -1 2295 198 8 25 chr6 3463882 3464393 -178950849 + L1MB3 LINE L1 5354 5855 -328 1731 138 41 3 chr6 3464454 3464773 -178950469 + L1MB3 LINE L1 5853 6183 0 227 224 66 40 chr6 3466491 3466567 -178948675 - MER103 DNA DNA -33 133 56 2360 93 6 3 chr6 3466604 3466915 -178948327 + AluSx SINE Alu 1 312 0 273 357 27 32 chr6 3468719 3468904 -178946338 - MIR SINE MIR -46 216 33 2346 109 0 10 chr6 3469519 3469832 -178945410 + AluSx SINE Alu 1 310 -2 2487 86 0 13 chr6 3470531 3470844 -178944398 + AluSg SINE Alu 1 309 -1 293 277 161 0 chr6 3470891 3471021 -178944221 + MIR SINE MIR 80 230 -32 287 248 109 20 chr6 3472062 3472163 -178943079 - MIR SINE MIR -87 175 66 2399 92 0 0 chr6 3473891 3474186 -178941056 + AluSx SINE Alu 1 295 -17 189 182 0 0 chr6 3475604 3475637 -178939605 - L2 LINE L2 -9 3304 3272 1143 219 98 19 chr6 3475706 3476021 -178939221 - MER58B DNA MER1_type -1 340 1 412 338 63 0 chr6 3476029 3476171 -178939071 + MIR SINE MIR 60 210 -52 701 251 72 43 chr6 3476226 3476297 -178938945 - MIR SINE MIR 0 262 195 729 174 39 45 chr6 3476297 3476475 -178938767 - MER104 DNA MER2_type -3 177 1 701 251 72 43 chr6 3476475 3476638 -178938604 - MIR SINE MIR -67 195 21 2891 180 39 2 chr6 3477429 3477969 -178937273 + MER68 LTR ERV1 3 562 0 431 136 19 29 chr6 3478083 3478186 -178937056 + GA-rich Low_complexity Low_complexity 2 103 0 182 293 171 37 chr6 3478228 3478310 -178936932 - L2 LINE L2 -42 3230 3138 915 227 96 9 chr6 3478350 3478579 -178936663 - MIR SINE MIR -11 251 3 203 325 103 88 chr6 3481118 3481438 -178933804 - L2 LINE L2 0 3272 2948 1240 192 42 0 chr6 3481539 3481753 -178933489 + MER58A DNA MER1_type 1 223 -1 2647 64 0 3 chr6 3483128 3483441 -178931801 - AluSq SINE Alu -1 312 1 192 179 0 0 chr6 3484431 3484470 -178930772 + (TG)n Simple_repeat Simple_repeat 1 39 0 807 307 65 3 chr6 3485180 3485489 -178929753 - MLT1I LTR MaLR 0 409 82 490 301 47 28 chr6 3486039 3486252 -178928990 + MIR SINE MIR 20 236 -26 1146 215 42 0 chr6 3487074 3487288 -178927954 + MER58A DNA MER1_type 1 223 -1 365 271 126 37 chr6 3487552 3487746 -178927496 + L1ME3A LINE L1 5754 5961 -204 286 355 89 23 chr6 3488214 3488428 -178926814 - L2 LINE L2 -404 2910 2683 2876 161 38 21 chr6 3489203 3489713 -178925529 + L1MB3 LINE L1 5613 6134 -49 1996 156 0 10 chr6 3489713 3490014 -178925228 + AluSx SINE Alu 1 298 -14 2876 161 38 21 chr6 3490014 3490061 -178925181 + L1MB3 LINE L1 6134 6179 -4 203 319 43 28 chr6 3491106 3491247 -178923995 - MIR3 SINE MIR -33 175 33 1773 231 104 29 chr6 3491634 3492193 -178923049 + L1MD3 LINE L1 7374 7974 -21 241 226 0 0 chr6 3492762 3492815 -178922427 + (AAATG)n Simple_repeat Simple_repeat 4 56 0 3144 158 19 73 chr6 3492853 3493471 -178921771 + L1MB3 LINE L1 5467 6038 -145 2342 108 0 0 chr6 3493471 3493778 -178921464 + AluSq SINE Alu 4 310 -3 3144 158 19 73 chr6 3493778 3493914 -178921328 + L1MB3 LINE L1 6038 6180 -3 410 353 64 5 chr6 3495707 3495894 -178919348 - L3 LINE CR1 -977 600 403 233 242 81 0 chr6 3495885 3495947 -178919295 + MIR3 SINE MIR 132 198 -10 * 515 340 68 42 chr6 3496030 3496415 -178918827 - L2 LINE L2 0 3313 2919 692 274 135 0 chr6 3496522 3496752 -178918490 + MLT1J LTR MaLR 1 261 -250 264 221 139 25 chr6 3496788 3496910 -178918332 + MLT1J LTR MaLR 376 511 0 1642 281 166 16 chr6 3496921 3497782 -178917460 - L2 LINE L2 -581 2733 1744 608 271 47 0 chr6 3497821 3498013 -178917229 - MER3 DNA MER1_type -8 201 1 265 330 0 10 chr6 3499105 3499208 -178916034 + L2 LINE L2 2686 2787 -527 3422 132 93 63 chr6 3500630 3500763 -178914479 + LTR1 LTR ERV1 13 140 -645 2244 95 41 0 chr6 3500763 3501058 -178914184 + AluSc SINE Alu 1 307 -2 3422 132 93 63 chr6 3501058 3501674 -178913568 + LTR1 LTR ERV1 140 785 0 328 246 228 0 chr6 3501678 3501792 -178913450 + MIR SINE MIR 82 221 -41 284 263 19 113 chr6 3501975 3502135 -178913107 + MIR SINE MIR 117 261 -1 189 0 0 0 chr6 3502937 3502958 -178912284 + (T)n Simple_repeat Simple_repeat 1 21 0 1841 166 3 16 chr6 3503238 3503545 -178911697 + AluJo SINE Alu 9 311 -1 2390 85 3 0 chr6 3504367 3504660 -178910582 - AluSq SINE Alu -19 294 1 282 286 77 16 chr6 3505041 3505167 -178910075 - MIR SINE MIR -46 162 34 297 107 58 223 chr6 3505485 3505542 -178909700 + L1MB4 LINE L1 6080 6108 -72 2319 111 13 0 chr6 3505542 3505848 -178909394 + AluSx SINE Alu 1 310 -2 297 107 58 223 chr6 3505848 3505911 -178909331 + L1MB4 LINE L1 6108 6180 0 198 311 67 25 chr6 3506312 3506431 -178908811 + L2 LINE L2 2256 2379 -935 211 351 84 15 chr6 3506627 3506829 -178908413 + L2 LINE L2 2555 2770 -544 264 393 27 0 chr6 3508365 3508477 -178906765 - MIR SINE MIR -61 147 33 2199 99 7 17 chr6 3509461 3509763 -178905479 + AluSg SINE Alu 1 299 -11 23 33 0 0 chr6 3510098 3510128 -178905114 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 3510686 3510707 -178904535 + AT_rich Low_complexity Low_complexity 1 21 0 333 118 0 0 chr6 3511009 3511060 -178904182 + (TG)n Simple_repeat Simple_repeat 2 52 0 1125 181 59 0 chr6 3512456 3512660 -178902582 + MER58A DNA MER1_type 1 216 -8 324 329 39 7 chr6 3513007 3513162 -178902080 - MER117 DNA MER1_type -37 160 1 191 181 0 169 chr6 3515001 3515084 -178900158 - MIR3 SINE MIR -48 160 92 863 189 123 13 chr6 3515892 3516120 -178899122 + L1MB8 LINE L1 5926 6178 0 180 231 96 0 chr6 3516486 3516538 -178898704 + MIR SINE MIR 124 180 -82 349 289 72 62 chr6 3516767 3516961 -178898281 + MIR SINE MIR 23 218 -44 1842 213 82 25 chr6 3517082 3517560 -178897682 + MLT1D LTR MaLR 1 505 0 464 290 0 7 chr6 3517560 3517705 -178897537 - LTR33 LTR ERVL -11 510 367 207 0 0 0 chr6 3519204 3519227 -178896015 + (A)n Simple_repeat Simple_repeat 1 23 0 641 266 74 29 chr6 3519396 3519640 -178895602 + MIR SINE MIR 8 262 0 648 239 31 6 chr6 3522019 3522178 -178893064 + MER5A DNA MER1_type 1 163 -26 181 385 0 51 chr6 3523449 3523527 -178891715 - L3b LINE CR1 -7 1576 1503 198 280 0 32 chr6 3523689 3523782 -178891460 + L2 LINE L2 2487 2576 -738 256 167 26 64 chr6 3524238 3524316 -178890926 + LTR33A LTR ERVL 440 514 -9 212 287 111 37 chr6 3524374 3524482 -178890760 + L2 LINE L2 2585 2700 -614 2028 156 16 0 chr6 3525305 3525612 -178889630 + AluSx SINE Alu 1 312 0 562 272 32 10 chr6 3525697 3525979 -178889263 + L1ME4a LINE L1 5541 5870 -251 283 272 41 35 chr6 3526020 3526189 -178889053 + L1ME4a LINE L1 5952 6121 0 209 146 21 0 chr6 3528062 3528110 -178887132 + GA-rich Low_complexity Low_complexity 2 50 0 1149 230 0 9 chr6 3529149 3529375 -178885867 + MER58A DNA MER1_type 1 224 0 191 286 0 0 chr6 3529375 3529424 -178885818 + L2 LINE L2 3189 3237 -76 31 26 0 0 chr6 3529577 3529615 -178885627 + AT_rich Low_complexity Low_complexity 1 38 0 2604 60 7 0 chr6 3529765 3530066 -178885176 - AluY SINE Alu -8 303 1 403 301 74 25 chr6 3530134 3530297 -178884945 - MIR SINE MIR -6 256 86 283 290 75 37 chr6 3530670 3530777 -178884465 - MIR SINE MIR -56 152 42 186 143 0 0 chr6 3531138 3531173 -178884069 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 321 354 82 10 chr6 3531541 3531747 -178883495 + MIR SINE MIR 16 236 -26 23 0 0 0 chr6 3533155 3533178 -178882064 + AT_rich Low_complexity Low_complexity 1 23 0 429 218 0 0 chr6 3533356 3533443 -178881799 + MER103 DNA DNA 35 121 -45 2878 133 58 0 chr6 3534046 3534542 -178880700 + L1MB3 LINE L1 5649 6173 -10 2487 99 3 0 chr6 3535267 3535579 -178879663 + AluSp SINE Alu 1 313 0 304 314 122 17 chr6 3536519 3536691 -178878551 - MIR SINE MIR -59 203 14 1001 269 134 5 chr6 3538090 3538507 -178876735 + L1ME2 LINE L1 5694 6164 0 2176 94 7 0 chr6 3538515 3538791 -178876451 + AluSx SINE Alu 1 278 -34 216 0 0 0 chr6 3538791 3538815 -178876427 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2205 101 17 0 chr6 3538816 3539104 -178876138 + AluSg SINE Alu 1 293 -17 464 299 0 22 chr6 3539756 3539893 -178875349 + C-rich Low_complexity Low_complexity 3 136 0 1698 158 80 19 chr6 3540176 3540537 -178874705 + MLT1B LTR MaLR 8 390 0 2043 102 62 0 chr6 3540641 3540916 -178874326 - AluSq SINE Alu -19 294 3 240 233 0 17 chr6 3541208 3541268 -178873974 + L2 LINE L2 3241 3299 -14 2355 78 0 38 chr6 3541878 3542198 -178873044 + AluY SINE Alu 1 308 -3 1380 103 0 0 chr6 3542228 3542402 -178872840 - AluSq SINE Alu -11 302 129 870 145 18 84 chr6 3543562 3543789 -178871453 - MER20 DNA MER1_type 0 219 8 225 114 139 101 chr6 3543793 3543872 -178871370 - MER5B DNA MER1_type -76 102 21 196 302 19 0 chr6 3544485 3544538 -178870704 - L2 LINE L2 -541 2773 2720 1852 157 42 37 chr6 3544730 3544908 -178870334 + MLT1B LTR MaLR 1 177 -213 2474 76 0 3 chr6 3544908 3545209 -178870033 + AluSg SINE Alu 1 300 -10 1852 157 42 37 chr6 3545209 3545412 -178869830 + MLT1B LTR MaLR 177 384 -6 2289 192 51 2 chr6 3546457 3546926 -178868316 + L1MB3 LINE L1 5690 6181 -2 382 179 0 0 chr6 3547710 3547777 -178867465 + MER45 DNA AcHobo 1515 1581 0 190 293 146 24 chr6 3549542 3549665 -178865577 - MIR SINE MIR -79 183 46 2310 90 3 7 chr6 3549683 3549982 -178865260 - AluSx SINE Alu -14 298 1 211 264 80 55 chr6 3550135 3550336 -178864906 - L2 LINE L2 -231 3041 2836 199 258 81 97 chr6 3550374 3550498 -178864744 - L2 LINE L2 -555 2759 2638 287 287 174 0 chr6 3550724 3550839 -178864403 + MIR3 SINE MIR 30 164 -44 282 290 23 76 chr6 3551497 3551628 -178863614 + L2 LINE L2 2678 2801 -513 467 301 33 99 chr6 3551668 3552030 -178863212 + L2 LINE L2 2910 3247 -25 2509 88 0 0 chr6 3552062 3552370 -178862872 - AluY SINE Alu -3 308 1 2454 79 0 13 chr6 3552380 3552685 -178862557 - AluSx SINE Alu -11 301 1 822 202 52 31 chr6 3552727 3552920 -178862322 + MER63A DNA MER1_type 12 208 -2 2345 80 0 6 chr6 3552965 3553276 -178861966 - AluY SINE Alu -2 309 1 249 57 0 0 chr6 3553368 3553403 -178861839 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 363 314 84 58 chr6 3553670 3553896 -178861346 + L1MC4a LINE L1 5007 5238 -908 1050 282 96 23 chr6 3553917 3554503 -178860739 + L1MC4a LINE L1 5266 5824 -297 2471 74 0 0 chr6 3554790 3555087 -178860155 - AluSg SINE Alu -13 297 1 1967 122 3 0 chr6 3555692 3555979 -178859263 - AluSx SINE Alu -24 288 1 224 0 65 0 chr6 3556021 3556052 -178859190 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1629 165 25 50 chr6 3556292 3556714 -178858528 + Tigger5 DNA MER2_type 1 2323 0 1787 136 0 26 chr6 3556803 3557113 -178858129 + AluJo SINE Alu 11 312 0 300 338 214 33 chr6 3557375 3557988 -178857254 + L3 LINE CR1 852 1575 -2 43 97 0 0 chr6 3560897 3561031 -178854211 + GC_rich Low_complexity Low_complexity 1 134 0 27 49 0 0 chr6 3561222 3561263 -178853979 + GC_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr6 3561384 3561410 -178853832 + GC_rich Low_complexity Low_complexity 1 26 0 285 29 0 0 chr6 3561574 3561608 -178853634 + (TCC)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr6 3561707 3561729 -178853513 + GC_rich Low_complexity Low_complexity 1 22 0 303 241 13 13 chr6 3563122 3563201 -178852041 + MIR SINE MIR 184 262 0 556 234 101 32 chr6 3564171 3564359 -178850883 + L2 LINE L2 3113 3313 0 287 307 128 44 chr6 3564634 3564885 -178850357 + MER102b DNA MER1_type 67 338 -3 2136 82 21 7 chr6 3565884 3566175 -178849067 + AluSc SINE Alu 1 295 -14 270 0 0 0 chr6 3566184 3566214 -178849028 + (CA)n Simple_repeat Simple_repeat 2 31 0 4063 136 120 104 chr6 3566973 3567391 -178847851 + L1MC3 LINE L1 6685 7095 -690 245 273 39 0 chr6 3567391 3567468 -178847774 + MLT1F1 LTR MaLR 35 114 -453 4063 136 120 104 chr6 3567468 3568057 -178847185 + L1MC3 LINE L1 7095 7785 0 1901 155 8 137 chr6 3568106 3568270 -178846972 + MSTB LTR MaLR 1 184 -242 2390 57 0 0 chr6 3568270 3568569 -178846673 + AluY SINE Alu 1 299 -12 1901 155 8 137 chr6 3568569 3568893 -178846349 + MSTB LTR MaLR 184 426 0 2123 105 3 0 chr6 3568936 3569230 -178846012 - AluSp SINE Alu -16 297 3 1921 86 30 50 chr6 3569322 3569625 -178845617 - AluSp SINE Alu -16 297 1 252 264 153 0 chr6 3570166 3570238 -178845004 + L2 LINE L2 3230 3312 -1 186 43 0 0 chr6 3570453 3570476 -178844766 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2142 97 3 0 chr6 3570482 3570770 -178844472 - AluSp SINE Alu -23 290 2 1957 239 79 5 chr6 3570827 3571371 -178843871 - L1MB8 LINE L1 -6 6172 5588 328 262 10 19 chr6 3571700 3571803 -178843439 - MLT1K LTR MaLR -8 580 479 2168 96 3 0 chr6 3572078 3572371 -178842871 + AluSp SINE Alu 2 295 -18 492 279 0 64 chr6 3572572 3572744 -178842498 + MIR SINE MIR 37 197 -65 310 254 62 102 chr6 3573341 3573422 -178841820 - MIR SINE MIR -55 207 124 1065 193 88 99 chr6 3573422 3573877 -178841365 + LTR7 LTR ERV1 1 450 0 310 254 62 102 chr6 3573877 3574010 -178841232 - MIR SINE MIR -138 124 1 609 279 96 21 chr6 3574897 3575177 -178840065 - MARNA DNA Mariner -111 475 175 2366 87 0 0 chr6 3575555 3575867 -178839375 - AluSx SINE Alu 0 312 1 352 287 38 96 chr6 3576528 3576655 -178838587 - MIR3 SINE MIR -8 200 88 2217 108 7 0 chr6 3576655 3576961 -178838281 + AluSp SINE Alu 1 308 -5 352 287 38 96 chr6 3576961 3577042 -178838200 - MIR3 SINE MIR -120 88 4 342 0 0 0 chr6 3577797 3577835 -178837407 + (CA)n Simple_repeat Simple_repeat 2 39 0 2075 89 4 0 chr6 3578045 3578379 -178836863 - AluY SINE Alu 0 335 1 2169 105 7 0 chr6 3578728 3579034 -178836208 + AluSq SINE Alu 1 308 -5 2203 101 0 0 chr6 3579207 3579504 -178835738 - AluY SINE Alu -14 297 1 24 32 0 0 chr6 3579963 3579994 -178835248 + AT_rich Low_complexity Low_complexity 1 31 0 197 306 32 0 chr6 3580128 3580190 -178835052 - L2 LINE L2 -1 3271 3208 332 212 288 30 chr6 3580452 3580584 -178834658 - MER5A DNA MER1_type -15 174 9 1803 152 27 3 chr6 3580791 3581088 -178834154 - AluJb SINE Alu -8 304 1 403 316 85 59 chr6 3581188 3581460 -178833782 - L1MC4a LINE L1 -1822 5986 5708 257 303 55 0 chr6 3581460 3581569 -178833673 - L1MC4a LINE L1 -856 5290 5176 209 241 316 0 chr6 3581804 3581883 -178833359 + MER5A DNA MER1_type 71 174 -15 1869 143 0 51 chr6 3581918 3582232 -178833010 - MER1B DNA MER1_type -13 326 29 491 293 103 33 chr6 3582942 3583184 -178832058 + L2 LINE L2 549 807 -2507 1271 269 16 22 chr6 3583184 3583555 -178831687 - MLT1A2 LTR MaLR -5 369 1 2330 182 25 0 chr6 3583555 3583962 -178831280 - MLT1A2-int LTR MaLR 0 1735 1319 1765 173 8 37 chr6 3583983 3584049 -178831193 - MLT1A2-int LTR MaLR -770 601 535 1957 95 0 18 chr6 3584049 3584357 -178830885 - AluSg SINE Alu 0 303 1 1765 173 8 37 chr6 3584357 3584641 -178830601 - MLT1A2-int LTR MaLR -836 535 260 675 126 36 0 chr6 3584632 3584743 -178830499 - MLT1A2-int LTR MaLR -1256 115 1 * 1131 182 70 134 chr6 3584743 3585052 -178830190 - MLT1B LTR MaLR 0 390 113 2169 115 0 3 chr6 3585052 3585357 -178829885 - AluSx SINE Alu -8 304 1 1131 182 70 134 chr6 3585357 3585464 -178829778 - MLT1B LTR MaLR -277 113 1 315 246 49 0 chr6 3586030 3586152 -178829090 + LTR33A LTR ERVL 260 394 -127 850 244 44 44 chr6 3586180 3586454 -178828788 - MER21B LTR ERV1 -125 738 465 1195 273 31 41 chr6 3586508 3586896 -178828346 - MER21B LTR ERV1 -382 481 98 479 217 16 50 chr6 3586869 3587017 -178828225 - MER21B LTR ERV1 -408 197 16 * 298 363 74 7 chr6 3587191 3587326 -178827916 + L2 LINE L2 3125 3268 -4 183 280 80 0 chr6 3587360 3587410 -178827832 - L2 LINE L2 -19 3294 3241 401 259 106 55 chr6 3587767 3587941 -178827301 + MIR SINE MIR 20 191 -62 252 330 64 0 chr6 3588937 3589031 -178826211 - L2 LINE L2 -34 3279 3180 2201 102 0 0 chr6 3589862 3590156 -178825086 - AluSx SINE Alu -18 294 1 381 276 67 8 chr6 3590572 3590706 -178824536 + MER5A DNA MER1_type 11 152 -37 3393 144 29 10 chr6 3590706 3591295 -178823947 + L1MB3 LINE L1 5500 6099 -84 260 88 0 0 chr6 3591386 3591420 -178823822 + Alu SINE Alu 252 285 -16 241 264 28 0 chr6 3591884 3591956 -178823286 + L2 LINE L2 2866 2939 -333 292 267 22 11 chr6 3592853 3592943 -178822299 - L2 LINE L2 -6 3266 3176 196 328 115 33 chr6 3592962 3593084 -178822158 - L2 LINE L2 -37 3235 3104 2108 116 0 0 chr6 3593187 3593480 -178821762 - AluSx SINE Alu -19 293 1 22 35 0 0 chr6 3593482 3593511 -178821731 + AT_rich Low_complexity Low_complexity 1 29 0 344 191 296 0 chr6 3594123 3594238 -178821004 + MER5B DNA MER1_type 30 178 0 368 171 29 86 chr6 3594355 3594460 -178820782 + MER5A DNA MER1_type 14 112 -77 1446 201 97 41 chr6 3594536 3594733 -178820509 + MLT1C LTR MaLR 1 185 -282 2068 150 18 48 chr6 3594733 3594812 -178820430 - L1MA5A LINE L1 -6 6291 6211 3123 121 77 16 chr6 3594812 3595309 -178819933 + MER1A DNA MER1_type 1 527 0 2068 150 18 48 chr6 3595309 3595629 -178819613 - L1MA5A LINE L1 -86 6211 5904 1446 201 97 41 chr6 3595629 3595873 -178819369 + MLT1C LTR MaLR 185 467 0 1434 253 107 15 chr6 3596596 3597122 -178818120 - MER90 LTR ERV1 0 575 2 403 220 53 0 chr6 3597436 3597521 -178817721 - MLT1B LTR MaLR -195 195 115 1839 148 25 0 chr6 3597521 3597805 -178817437 - AluSx SINE Alu -21 291 1 403 220 53 0 chr6 3597805 3597826 -178817416 - MLT1B LTR MaLR -275 115 97 2166 114 0 19 chr6 3598280 3598595 -178816647 + AluSg SINE Alu 1 309 -1 285 333 101 0 chr6 3598786 3598915 -178816327 + MIR SINE MIR 51 192 -70 510 260 31 0 chr6 3599139 3599266 -178815976 - MIR3 SINE MIR -31 177 47 689 253 78 66 chr6 3599357 3599614 -178815628 - MIR SINE MIR -1 261 2 639 148 191 37 chr6 3599632 3599683 -178815559 + MER5A DNA MER1_type 1 43 -146 1462 179 14 133 chr6 3599683 3600047 -178815195 + MLT1A1 LTR MaLR 1 312 -53 2079 111 7 0 chr6 3600047 3600344 -178814898 + AluSp SINE Alu 1 299 -14 1462 179 14 133 chr6 3600344 3600393 -178814849 + MLT1A1 LTR MaLR 312 365 0 639 148 191 37 chr6 3600393 3600503 -178814739 + MER5A DNA MER1_type 43 187 -2 507 121 38 30 chr6 3601013 3601145 -178814097 + CT-rich Low_complexity Low_complexity 4 136 0 2264 86 0 13 chr6 3601955 3602269 -178812973 + AluY SINE Alu 1 310 -1 1052 198 58 133 chr6 3602477 3602877 -178812365 + MLT1A2 LTR MaLR 5 374 0 307 115 19 19 chr6 3602877 3602929 -178812313 + MLT1A2-int LTR MaLR 5 56 -1315 1735 180 62 36 chr6 3603150 3603196 -178812046 - MER74A LTR ERVL -40 518 475 1930 122 0 21 chr6 3603196 3603505 -178811737 + AluSp SINE Alu 1 303 0 1735 180 62 36 chr6 3603505 3603841 -178811401 - MER74A LTR ERVL -83 475 125 311 255 38 38 chr6 3604381 3604487 -178810755 - MIR SINE MIR -55 207 102 1608 135 4 0 chr6 3604858 3605087 -178810155 + MER30 DNA MER1_type 1 230 0 2498 43 0 0 chr6 3605612 3605914 -178809328 - AluY SINE Alu -9 302 1 249 298 74 70 chr6 3606460 3606718 -178808524 - L1M4c LINE L1 -4803 1581 1323 195 129 0 0 chr6 3606719 3606750 -178808492 + (GAA)n Simple_repeat Simple_repeat 2 32 0 393 315 27 0 chr6 3606793 3606904 -178808338 + MIR SINE MIR 78 191 -71 556 250 56 35 chr6 3607196 3607428 -178807814 + HAL1 LINE L1 1314 1550 -957 798 244 168 74 chr6 3607477 3608150 -178807092 + HAL1 LINE L1 1648 2383 -124 315 186 0 17 chr6 3608783 3608842 -178806400 - MLT1I LTR MaLR -42 367 310 226 250 36 0 chr6 3608982 3609038 -178806204 + MLT1I LTR MaLR 73 130 -279 255 253 137 11 chr6 3609039 3609134 -178806108 - MLT1I LTR MaLR -272 137 31 1237 110 74 258 chr6 3609139 3609693 -178805549 - LTR12 LTR ERV1 -208 506 55 970 145 36 67 chr6 3609695 3609888 -178805354 - LTR12 LTR ERV1 -527 187 1 356 295 104 23 chr6 3610785 3610958 -178804284 + MIR3 SINE MIR 5 191 -17 299 259 27 27 chr6 3610985 3611097 -178804145 + GA-rich Low_complexity Low_complexity 2 113 0 273 314 118 0 chr6 3611337 3611490 -178803752 - MIR SINE MIR 0 262 92 1074 281 102 14 chr6 3611552 3611994 -178803248 - L1MC/D LINE L1 -2011 5797 5317 305 333 51 39 chr6 3612009 3612243 -178802999 - L1MC/D LINE L1 -843 5303 5067 237 263 66 136 chr6 3612246 3612489 -178802753 - LTR33 LTR ERVL -2 519 294 302 301 74 66 chr6 3612821 3612924 -178802318 - L1MC/D LINE L1 -1211 4935 4834 2082 109 10 0 chr6 3612924 3613217 -178802025 - AluSg SINE Alu -14 296 1 302 301 74 66 chr6 3613217 3613505 -178801737 - L1MC/D LINE L1 -1312 4834 4541 2138 235 49 42 chr6 3613521 3613615 -178801627 + L1MC4 LINE L1 7316 7408 -634 1231 218 45 77 chr6 3613615 3613992 -178801250 + MLT1A1 LTR MaLR 1 365 0 2138 235 49 42 chr6 3613992 3614618 -178800624 + L1MC4 LINE L1 7408 8030 -12 346 248 85 31 chr6 3615105 3615234 -178800008 - MIR SINE MIR -7 255 120 270 0 0 0 chr6 3615814 3615844 -178799398 + (TG)n Simple_repeat Simple_repeat 1 30 0 411 73 0 0 chr6 3615844 3615899 -178799343 + (GA)n Simple_repeat Simple_repeat 2 56 0 2368 126 91 2 chr6 3616122 3616518 -178798724 + MSTB1 LTR MaLR 2 432 0 491 318 97 24 chr6 3616538 3616902 -178798340 + LTR16A1 LTR ERVL 73 442 -15 384 274 60 8 chr6 3618158 3618275 -178796967 + MIR SINE MIR 139 261 -1 205 167 44 44 chr6 3618337 3618427 -178796815 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 670 147 0 0 chr6 3618447 3618542 -178796700 - AluJ/FLAM SINE Alu -216 96 2 21 0 0 0 chr6 3618543 3618564 -178796678 + AT_rich Low_complexity Low_complexity 1 21 0 366 23 0 0 chr6 3619683 3619726 -178795516 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2012 105 0 11 chr6 3619727 3620012 -178795230 - AluSc SINE Alu -27 282 1 1637 182 4 0 chr6 3620022 3620302 -178794940 - AluJo SINE Alu -26 286 6 189 0 0 0 chr6 3620529 3620550 -178794692 + (CA)n Simple_repeat Simple_repeat 1 21 0 252 416 0 0 chr6 3620895 3621068 -178794174 + C-rich Low_complexity Low_complexity 1 173 0 * 280 235 16 53 chr6 3620952 3621139 -178794103 + CT-rich Low_complexity Low_complexity 1 180 0 * 344 354 0 17 chr6 3621117 3621371 -178793871 + C-rich Low_complexity Low_complexity 1 249 0 384 260 0 44 chr6 3621413 3621594 -178793648 + C-rich Low_complexity Low_complexity 2 174 0 352 298 6 28 chr6 3621619 3621800 -178793442 + C-rich Low_complexity Low_complexity 2 178 0 202 309 52 0 chr6 3622395 3622492 -178792750 + MIR3 SINE MIR 86 187 -21 691 232 87 68 chr6 3623886 3624196 -178791046 - HAL1b LINE L1 -234 1114 799 2107 187 44 22 chr6 3624201 3624651 -178790591 + MLT1C LTR MaLR 8 467 0 320 301 0 42 chr6 3624654 3624797 -178790445 - HAL1b LINE L1 -549 799 663 252 185 0 0 chr6 3624805 3624859 -178790383 + CT-rich Low_complexity Low_complexity 4 57 0 243 284 11 42 chr6 3625497 3625592 -178789650 - MIR3 SINE MIR -6 202 111 2128 121 142 16 chr6 3626103 3626483 -178788759 - MSTA LTR MaLR 0 428 1 380 221 123 16 chr6 3626923 3627045 -178788197 + L2 LINE L2 3138 3272 0 295 265 128 0 chr6 3627175 3627277 -178787965 - MLT1J2 LTR MaLR -54 396 282 379 239 72 42 chr6 3628155 3628418 -178786824 + L1M2 LINE L1 5197 5473 -727 333 319 62 35 chr6 3628735 3628992 -178786250 + L2 LINE L2 2827 3090 -182 372 252 107 0 chr6 3630065 3630168 -178785074 - MER91C DNA MER1_type -26 114 1 367 229 24 0 chr6 3630686 3630769 -178784473 + LTR16C LTR ERVL 405 489 -2 260 320 20 60 chr6 3630771 3630921 -178784321 + MIR SINE MIR 99 242 -20 209 108 27 0 chr6 3631105 3631143 -178784099 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1056 206 0 0 chr6 3632199 3632393 -178782849 - MER58A DNA MER1_type -2 222 29 1701 167 53 35 chr6 3632459 3632539 -178782703 + MER7A DNA MER2_type 2 79 -2959 2081 108 10 0 chr6 3632539 3632834 -178782408 - AluSp SINE Alu -15 298 1 1701 167 53 35 chr6 3632834 3633094 -178782148 + MER7A DNA MER2_type 79 346 0 601 280 6 34 chr6 3633393 3633568 -178781674 + MIR SINE MIR 34 203 -59 248 231 39 0 chr6 3633613 3633665 -178781577 + L2 LINE L2 3169 3222 -50 231 247 156 0 chr6 3633954 3634031 -178781211 - MIR SINE MIR -66 196 108 572 272 119 98 chr6 3634138 3634191 -178781051 - L2 LINE L2 0 3272 3222 2208 182 36 77 chr6 3634191 3634724 -178780518 - MLT2B2 LTR ERVL 0 515 5 572 272 119 98 chr6 3634724 3635049 -178780193 - L2 LINE L2 -50 3222 2886 266 343 170 24 chr6 3635099 3635388 -178779854 - L2 LINE L2 -463 2851 2521 2167 157 10 20 chr6 3636384 3636778 -178778464 - L1MA8 LINE L1 -8 6283 5894 319 148 49 0 chr6 3637177 3637238 -178778004 - MLT1B LTR MaLR 0 390 327 2689 170 15 0 chr6 3637238 3637709 -178777533 - MLT1B-int LTR MaLR -892 479 2 2153 164 46 0 chr6 3637710 3638083 -178777159 - MLT1B LTR MaLR 0 390 1 1782 179 15 133 chr6 3638500 3639087 -178776155 + MLT2B1 LTR ERVL 3 520 0 946 282 51 0 chr6 3639198 3639514 -178775728 + L2 LINE L2 1878 2209 -1105 722 274 112 34 chr6 3639521 3639904 -178775338 - LTR16A LTR ERVL -12 438 26 657 287 72 5 chr6 3641385 3641608 -178773634 + MIR SINE MIR 25 262 0 1698 73 0 0 chr6 3641663 3641882 -178773360 + L1PA8 LINE L1 5954 6172 0 295 272 33 87 chr6 3643447 3643575 -178771667 + MIR SINE MIR 35 154 -62 27 0 0 0 chr6 3644678 3644705 -178770537 + AT_rich Low_complexity Low_complexity 1 27 0 2195 93 0 13 chr6 3645255 3645557 -178769685 - AluSx SINE Alu -14 298 1 301 271 94 10 chr6 3646145 3646360 -178768882 - L1MC4a LINE L1 -166 5955 5723 357 325 44 10 chr6 3646730 3646933 -178768309 - LTR16C LTR ERVL -27 464 255 1957 159 60 5 chr6 3647715 3648085 -178767157 - MLT1B LTR MaLR 0 390 1 231 170 0 0 chr6 3648157 3648204 -178767038 + CT-rich Low_complexity Low_complexity 2 48 0 569 157 52 11 chr6 3648212 3648484 -178766758 + (TCTA)n Simple_repeat Simple_repeat 1 283 0 704 262 33 11 chr6 3648535 3648718 -178766524 - MIR SINE MIR -59 203 17 660 309 97 78 chr6 3648776 3649911 -178765331 - L1MEc LINE L1 -3159 3056 1934 1377 195 31 14 chr6 3649979 3650271 -178764971 + AluJo SINE Alu 1 297 -15 278 132 0 94 chr6 3650349 3650402 -178764840 - MLT2B1 LTR ERVL 0 520 350 207 169 42 0 chr6 3650405 3650476 -178764766 + (TA)n Simple_repeat Simple_repeat 1 74 0 2261 172 67 26 chr6 3650480 3650940 -178764302 - MLT2B1 LTR ERVL -41 479 1 402 182 76 84 chr6 3651908 3652001 -178763241 + MIR SINE MIR 3 97 -111 1388 179 100 56 chr6 3652001 3652431 -178762811 + LTR7 LTR ERV1 2 450 0 402 182 76 84 chr6 3652431 3652482 -178762760 + MIR SINE MIR 97 147 -61 403 130 26 0 chr6 3652584 3652661 -178762581 + GA-rich Low_complexity Low_complexity 3 81 0 2298 58 0 3 chr6 3652724 3653017 -178762225 + AluY SINE Alu 2 293 -18 1398 56 0 0 chr6 3654680 3654860 -178760382 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1187 174 0 126 chr6 3654884 3655201 -178760041 - AluJo SINE Alu -6 306 30 1970 199 80 45 chr6 3655476 3656106 -178759136 - L1M4 LINE L1 -2608 3538 2909 5308 223 35 30 chr6 3656106 3658257 -178756985 - L1MD2 LINE L1 0 6753 3237 2388 253 24 28 chr6 3658256 3659182 -178756060 - L1MD2 LINE L1 -3265 3275 2401 * 693 186 0 90 chr6 3659183 3659294 -178755948 - AluJo SINE Alu -178 134 37 2362 74 10 7 chr6 3659294 3659593 -178755649 + AluY SINE Alu 1 300 -11 693 186 0 90 chr6 3659593 3659626 -178755616 - AluJo SINE Alu -275 37 3 1406 228 24 19 chr6 3659694 3660187 -178755055 - L1MD2 LINE L1 -5028 1515 1020 971 251 3 38 chr6 3660193 3660484 -178754758 + L1MB5 LINE L1 3439 3719 -2427 402 185 0 0 chr6 3660588 3660669 -178754573 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 1653 214 12 3 chr6 3660949 3661295 -178753947 + L1MB5 LINE L1 4931 5279 -867 1625 224 26 28 chr6 3661294 3661447 -178753795 + L1MA9 LINE L1 5852 6004 -308 * 369 0 0 0 chr6 3661447 3661488 -178753754 + (TG)n Simple_repeat Simple_repeat 2 42 0 1625 224 26 28 chr6 3661488 3661758 -178753484 + L1MA9 LINE L1 6004 6274 -38 * 4049 190 43 29 chr6 3661749 3662644 -178752598 + L1MB5 LINE L1 5266 6165 -9 1564 154 104 48 chr6 3662649 3663005 -178752237 + L1MC3 LINE L1 7346 7721 -64 327 250 11 11 chr6 3663277 3663369 -178751873 - L1MD2 LINE L1 -5631 899 808 258 355 0 28 chr6 3663600 3663741 -178751501 - L1MD2 LINE L1 -6202 338 202 195 129 0 0 chr6 3663743 3663774 -178751468 + (A)n Simple_repeat Simple_repeat 1 31 0 613 311 40 20 chr6 3664534 3664785 -178750457 - MARNA DNA Mariner -200 386 131 245 209 0 0 chr6 3664779 3664822 -178750420 + MARNA DNA Mariner 466 508 -78 * 330 231 33 11 chr6 3664971 3665062 -178750180 - MLT1J LTR MaLR -1 510 418 239 113 19 0 chr6 3665146 3665199 -178750043 + T-rich Low_complexity Low_complexity 1 54 0 262 172 16 78 chr6 3665199 3665263 -178749979 - MLT1J LTR MaLR -449 62 3 408 191 0 0 chr6 3665683 3665767 -178749475 + (TCCA)n Simple_repeat Simple_repeat 2 85 0 243 0 0 0 chr6 3665836 3665863 -178749379 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 570 282 139 14 chr6 3666872 3667088 -178748154 - MIR SINE MIR -18 244 2 283 173 0 0 chr6 3667168 3667220 -178748022 - L2 LINE L2 -3 3310 3259 2141 193 24 39 chr6 3667253 3667788 -178747454 - MER74A LTR ERVL -30 528 2 327 25 0 0 chr6 3667841 3667881 -178747361 + (TG)n Simple_repeat Simple_repeat 2 41 0 2474 112 80 39 chr6 3668621 3668726 -178746516 + MSTA LTR MaLR 1 100 -328 2389 59 3 31 chr6 3668726 3669046 -178746196 - AluY SINE Alu 0 311 1 2474 112 80 39 chr6 3669046 3669351 -178745891 + MSTA LTR MaLR 100 428 0 1078 283 28 12 chr6 3669602 3669924 -178745318 - MLT1G1 LTR MaLR -206 389 63 354 98 0 0 chr6 3670246 3670297 -178744945 + (TG)n Simple_repeat Simple_repeat 1 51 0 2243 169 60 0 chr6 3670975 3671377 -178743865 + MSTB LTR MaLR 1 426 0 630 192 52 159 chr6 3671482 3671790 -178743452 - MER21B LTR ERV1 -566 297 23 298 223 11 53 chr6 3671848 3671942 -178743300 + HsTC2 DNA Tc2 13 102 -1796 714 254 59 21 chr6 3671953 3672271 -178742971 + HsTC2 DNA Tc2 1283 1898 0 316 285 79 62 chr6 3672271 3672895 -178742347 - L1ME4a LINE L1 -222 5899 5259 211 304 0 14 chr6 3673782 3673851 -178741391 - MIR SINE MIR -6 256 189 264 150 0 0 chr6 3674078 3674118 -178741124 - Tigger3(Golem) DNA MER2_type -2 3027 2988 223 308 8 34 chr6 3674124 3674241 -178741001 - L2 LINE L2 -574 2740 2627 242 222 14 14 chr6 3674391 3674463 -178740779 + CT-rich Low_complexity Low_complexity 2 73 0 267 180 41 25 chr6 3674474 3674596 -178740646 + CT-rich Low_complexity Low_complexity 2 125 0 507 186 207 21 chr6 3676060 3676200 -178739042 - MER5A DNA MER1_type 0 189 24 201 294 272 0 chr6 3676455 3676591 -178738651 + MIR SINE MIR 20 192 -70 212 203 219 0 chr6 3676912 3676976 -178738266 - MIR SINE MIR -96 166 89 1212 75 149 11 chr6 3677025 3677199 -178738043 - AluJo SINE Alu -24 288 91 300 297 89 10 chr6 3677199 3677300 -178737942 - MIR SINE MIR -56 152 44 285 297 129 43 chr6 3678057 3678266 -178736976 - L2 LINE L2 -14 3299 3073 231 189 0 0 chr6 3678276 3678329 -178736913 + (TG)n Simple_repeat Simple_repeat 2 54 0 233 281 22 52 chr6 3678395 3678530 -178736712 - L2 LINE L2 -216 3097 2967 2388 75 7 0 chr6 3678717 3679024 -178736218 - AluY SINE Alu -2 309 1 2190 96 4 0 chr6 3680822 3681103 -178734139 + AluSq SINE Alu 14 295 -18 247 258 247 0 chr6 3682413 3682510 -178732732 - MIR SINE MIR -81 181 61 2574 58 0 6 chr6 3682517 3682830 -178732412 - AluY SINE Alu 0 311 1 198 298 0 18 chr6 3684467 3684524 -178730718 + L2 LINE L2 3136 3191 -81 615 197 213 6 chr6 3684946 3685129 -178730113 + L1ME2 LINE L1 5943 6163 -1 281 279 196 6 chr6 3685370 3685549 -178729693 - L1ME LINE L1 -332 5789 5577 900 254 123 28 chr6 3686017 3686376 -178728866 + MLT1L LTR MaLR 207 599 -16 237 219 127 34 chr6 3686504 3686625 -178728617 - L1 LINE L1 -1113 5033 4908 389 304 147 16 chr6 3686865 3687355 -178727887 - L1 LINE L1 -1535 4611 4058 311 281 61 0 chr6 3687614 3687728 -178727514 - HAL1b LINE L1 -611 737 617 273 278 131 25 chr6 3687732 3687977 -178727265 - HAL1b LINE L1 -765 583 313 252 0 0 0 chr6 3688072 3688100 -178727142 + (TC)n Simple_repeat Simple_repeat 1 28 0 339 276 122 39 chr6 3689162 3689343 -178725899 + MIR SINE MIR 12 207 -55 2745 214 72 89 chr6 3689686 3690381 -178724861 - L1MC5 LINE L1 -45 7916 7253 222 37 0 0 chr6 3690381 3690408 -178724834 + (TC)n Simple_repeat Simple_repeat 1 27 0 2745 214 72 89 chr6 3690408 3691073 -178724169 - L1MC5 LINE L1 -708 7253 6578 1815 184 70 6 chr6 3692113 3692456 -178722786 - MLT1A1 LTR MaLR 0 365 1 2174 120 7 3 chr6 3692715 3693015 -178722227 + AluSx SINE Alu 1 301 -11 790 142 0 108 chr6 3693344 3693492 -178721750 + FLAM_A SINE Alu 1 132 -1 468 270 8 0 chr6 3693539 3693665 -178721577 - MER103 DNA DNA -36 130 4 383 240 20 89 chr6 3694759 3694905 -178720337 - L2 LINE L2 -36 3277 3142 254 306 209 0 chr6 3694912 3695046 -178720196 - MER5A DNA MER1_type -6 183 22 577 268 6 58 chr6 3695133 3695401 -178719841 - L2 LINE L2 -311 3002 2748 1853 247 18 26 chr6 3695417 3695571 -178719671 + L1ME1 LINE L1 5669 5823 -343 2223 115 0 3 chr6 3695571 3695883 -178719359 + AluSq SINE Alu 1 311 -2 1853 247 18 26 chr6 3695883 3696218 -178719024 + L1ME1 LINE L1 5823 6154 -12 22 0 0 0 chr6 3696218 3696240 -178719002 + AT_rich Low_complexity Low_complexity 1 22 0 324 299 56 0 chr6 3696287 3696394 -178718848 - L2 LINE L2 -578 2736 2624 417 294 7 7 chr6 3696395 3696548 -178718694 - L1MEc LINE L1 -4725 1671 1519 225 345 54 40 chr6 3696796 3696944 -178718298 - MIR3 SINE MIR -40 168 19 23 0 0 0 chr6 3698338 3698361 -178716881 + AT_rich Low_complexity Low_complexity 1 23 0 295 305 169 7 chr6 3698642 3698796 -178716446 + MER5A DNA MER1_type 7 185 -4 467 321 72 11 chr6 3699385 3699600 -178715642 - MIR SINE MIR -24 238 11 203 211 0 0 chr6 3699665 3699703 -178715539 - L2 LINE L2 -5 3267 3230 230 316 45 7 chr6 3700377 3700532 -178714710 + (TATATG)n Simple_repeat Simple_repeat 6 166 0 639 288 123 5 chr6 3702377 3702596 -178712646 - MIR SINE MIR -13 249 5 1901 118 24 3 chr6 3702610 3702898 -178712344 - L1MA4A LINE L1 -4 6299 6006 12082 171 35 55 chr6 3702903 3704776 -178710466 - L1 LINE L1 -1365 5483 3573 1327 189 20 46 chr6 3704776 3705078 -178710164 - AluJo SINE Alu -6 306 13 12082 171 35 55 chr6 3705078 3708611 -178706631 - L1 LINE L1 -3275 3573 8 2494 173 19 17 chr6 3708796 3709259 -178705983 + MLT2C2 LTR ERVL 1 464 0 200 321 24 0 chr6 3710083 3710167 -178705075 + (CATA)n Simple_repeat Simple_repeat 1 86 0 24 0 0 0 chr6 3710295 3710319 -178704923 + AT_rich Low_complexity Low_complexity 1 24 0 365 39 20 0 chr6 3710941 3710992 -178704250 + (CA)n Simple_repeat Simple_repeat 1 52 0 1450 177 18 201 chr6 3711954 3712682 -178702560 + MER45R DNA AcHobo 4 598 -983 236 236 153 42 chr6 3714410 3714482 -178700760 + L2 LINE L2 3167 3246 -26 922 44 0 0 chr6 3715207 3715320 -178699922 - AluY SINE Alu -16 295 183 274 308 143 0 chr6 3715321 3715412 -178699830 + L2 LINE L2 3149 3252 -20 363 325 21 5 chr6 3715829 3716020 -178699222 + L2 LINE L2 2297 2490 -824 2127 112 0 7 chr6 3716240 3716544 -178698698 - AluSg SINE Alu -8 302 1 436 349 99 71 chr6 3716660 3717024 -178698218 + L2 LINE L2 2890 3263 -9 5558 55 7 0 chr6 3717930 3718615 -178696627 + L1PA8 LINE L1 5483 6172 0 242 313 40 30 chr6 3718617 3718716 -178696526 - MIR SINE MIR -93 115 16 978 191 27 45 chr6 3718961 3719181 -178696061 + MER20 DNA MER1_type 2 217 -2 1071 212 104 34 chr6 3719200 3719469 -178695773 + AluJo SINE Alu 2 289 -13 538 206 23 17 chr6 3719481 3719656 -178695586 + GA-rich Low_complexity Low_complexity 1 176 0 26 30 0 0 chr6 3721847 3721880 -178693362 + AT_rich Low_complexity Low_complexity 1 33 0 1304 164 5 5 chr6 3722894 3723114 -178692128 - AluJo SINE Alu -20 292 73 1662 115 13 0 chr6 3724633 3724868 -178690374 + AluSx SINE Alu 43 280 -32 243 0 0 0 chr6 3724868 3724895 -178690347 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 297 206 29 0 chr6 3725020 3725122 -178690120 + (CA)n Simple_repeat Simple_repeat 2 106 0 250 222 19 0 chr6 3725150 3725204 -178690038 - MER4-int LTR ERV1 -5433 1165 1111 494 194 31 70 chr6 3725257 3725386 -178689856 + MER112 DNA MER1_type 128 251 -9 2337 94 0 0 chr6 3726452 3726760 -178688482 - AluSp SINE Alu -5 308 1 2107 179 47 38 chr6 3727603 3727656 -178687586 - L1MB3 LINE L1 0 6183 6132 2090 112 3 0 chr6 3727656 3727950 -178687292 - AluSq SINE Alu -18 295 1 2107 179 47 38 chr6 3727950 3728365 -178686877 - L1MB3 LINE L1 -51 6132 5711 1090 156 29 10 chr6 3729230 3729435 -178685807 - MLT1B LTR MaLR 0 390 182 230 109 0 219 chr6 3729442 3729506 -178685736 - MLT1B LTR MaLR -340 50 1 343 270 11 11 chr6 3729571 3729660 -178685582 + MER5A DNA MER1_type 18 106 -83 518 157 0 0 chr6 3730050 3730133 -178685109 + MER53 DNA DNA 107 189 0 300 277 36 0 chr6 3731380 3731463 -178683779 + L1MC4 LINE L1 6624 6709 -1333 332 83 73 0 chr6 3731491 3731587 -178683655 + (TA)n Simple_repeat Simple_repeat 1 103 0 1698 144 0 0 chr6 3731606 3731876 -178683366 - AluJb SINE Alu -27 285 16 317 288 161 0 chr6 3732231 3732349 -178682893 + MIR SINE MIR 25 161 -101 450 267 79 12 chr6 3734036 3734201 -178681041 - MLT1K LTR MaLR -24 564 389 2242 67 0 20 chr6 3734239 3734539 -178680703 + AluY SINE Alu 1 294 -17 2046 218 35 29 chr6 3734727 3735214 -178680028 + MER74A LTR ERVL 23 512 -46 2282 74 10 0 chr6 3735408 3735704 -178679538 - AluSx SINE Alu -13 299 1 515 305 110 13 chr6 3735811 3736047 -178679195 + MIR SINE MIR 4 262 0 4060 158 29 10 chr6 3736157 3736848 -178678394 - MER44D DNA MER2_type 0 705 2 431 276 32 42 chr6 3736909 3737220 -178678022 + L1MC4a LINE L1 5087 5394 -752 302 237 72 10 chr6 3737220 3737317 -178677925 - MLT1L LTR MaLR 0 615 513 245 338 0 0 chr6 3737535 3737606 -178677636 - MLT1J1 LTR MaLR -305 141 71 1063 262 144 63 chr6 3737636 3738259 -178676983 + MER21B LTR ERV1 23 696 -167 289 295 69 42 chr6 3738270 3738472 -178676770 - MER20B DNA MER1_type -4 215 5 233 310 14 0 chr6 3738527 3738598 -178676644 - MLT1L LTR MaLR -540 75 4 336 346 32 43 chr6 3738624 3738809 -178676433 + L1MC4a LINE L1 5420 5600 -562 2814 188 26 6 chr6 3738809 3739353 -178675889 + L1MB5 LINE L1 5613 6167 -7 336 346 32 43 chr6 3739353 3739443 -178675799 + L1MC4a LINE L1 5600 5689 -473 273 239 0 22 chr6 3739460 3739552 -178675690 + L1MC4 LINE L1 6614 6703 -1339 248 278 0 0 chr6 3739518 3739608 -178675634 - L1MC4 LINE L1 -1339 6703 6614 * 431 332 68 14 chr6 3739608 3739828 -178675414 + L1MC4a LINE L1 5667 5898 -1910 336 322 76 6 chr6 3739860 3740031 -178675211 + MIR SINE MIR 80 262 0 1785 172 0 0 chr6 3741030 3741321 -178673921 - AluJo SINE Alu -15 297 7 200 328 134 0 chr6 3742534 3742653 -178672589 + MIR SINE MIR 78 212 -50 852 193 59 5 chr6 3742708 3742895 -178672347 + L1MB4 LINE L1 5982 6178 -2 2150 260 91 38 chr6 3743121 3744486 -178670756 + L1ME3A LINE L1 4699 6136 -34 2235 109 3 0 chr6 3744509 3744820 -178670422 - AluSx SINE Alu 0 312 1 2114 184 0 13 chr6 3745115 3745506 -178669736 + L1MA8 LINE L1 3982 4367 -1779 5127 152 43 6 chr6 3745514 3746428 -178668814 + L1MA8 LINE L1 5323 6270 -21 4318 178 24 21 chr6 3746447 3747284 -178667958 + L1MB3 LINE L1 5293 6134 -49 2008 80 0 4 chr6 3747284 3747547 -178667695 + AluY SINE Alu 28 289 -22 4318 178 24 21 chr6 3747547 3747596 -178667646 + L1MB3 LINE L1 6134 6181 -2 326 275 29 80 chr6 3747820 3747958 -178667284 + L1ME4a LINE L1 5991 6121 0 198 118 0 0 chr6 3748865 3748899 -178666343 + (T)n Simple_repeat Simple_repeat 1 34 0 3842 240 49 20 chr6 3749848 3750230 -178665012 - MER45B DNA AcHobo -549 1032 663 2022 106 7 3 chr6 3750230 3750548 -178664694 - AluSg SINE Alu 0 319 1 3842 240 49 20 chr6 3750548 3750716 -178664526 - MER45B DNA AcHobo -918 663 501 2514 45 0 6 chr6 3750716 3751029 -178664213 + AluY SINE Alu 1 311 0 3842 240 49 20 chr6 3751029 3751478 -178663764 - MER45B DNA AcHobo -1080 501 1 350 265 163 21 chr6 3751956 3752288 -178662954 + HAL1 LINE L1 2009 2387 -120 2307 92 0 0 chr6 3752343 3752646 -178662596 - AluSx SINE Alu -9 303 1 2294 100 0 0 chr6 3752867 3753178 -178662064 - AluY SINE Alu 0 311 1 202 253 67 27 chr6 3753517 3753592 -178661650 - L2 LINE L2 -1 3271 3194 542 286 57 50 chr6 3753779 3754059 -178661183 + MLT1J LTR MaLR 229 510 -1 2337 78 113 0 chr6 3754059 3754394 -178660848 + MER51B LTR ERV1 1 373 -4 182 91 30 0 chr6 3755817 3755850 -178659392 + GA-rich Low_complexity Low_complexity 4 37 0 447 279 93 0 chr6 3756052 3756192 -178659050 - MER3 DNA MER1_type 0 209 57 648 205 93 9 chr6 3756476 3756659 -178658583 - MER20 DNA MER1_type -7 212 15 3438 182 44 4 chr6 3756950 3757626 -178657616 - L1MB2 LINE L1 -2 6169 5467 250 191 0 21 chr6 3757626 3757673 -178657569 - MLT1A1 LTR MaLR 0 365 320 2331 109 24 24 chr6 3757707 3758082 -178657160 + THE1C LTR MaLR 1 375 0 389 285 93 0 chr6 3758177 3758328 -178656914 - MLT1L LTR MaLR 0 615 451 213 330 54 18 chr6 3758715 3758827 -178656415 - L2 LINE L2 -4 3268 3153 203 161 0 0 chr6 3759735 3759766 -178655476 + T-rich Low_complexity Low_complexity 5 35 0 252 0 0 0 chr6 3760466 3760494 -178654748 + (CA)n Simple_repeat Simple_repeat 2 29 0 799 187 238 51 chr6 3761080 3761395 -178653847 - MLT1A2 LTR MaLR 0 374 1 433 256 89 28 chr6 3761421 3761601 -178653641 - MLT1L LTR MaLR -4 611 421 579 285 124 24 chr6 3761714 3761963 -178653279 - MLT1L LTR MaLR -341 274 1 304 310 35 44 chr6 3762488 3762691 -178652551 - L2 LINE L2 -187 3085 2885 1226 226 84 45 chr6 3762774 3763155 -178652087 - MSTD LTR MaLR 0 396 1 432 300 57 45 chr6 3764231 3764478 -178650764 - MIR SINE MIR 0 262 13 227 277 145 0 chr6 3764611 3764694 -178650548 + L2 LINE L2 3191 3285 -28 207 127 0 0 chr6 3765617 3765659 -178649583 + MIR SINE MIR 105 146 -62 348 276 23 0 chr6 3765693 3765780 -178649462 + MIR SINE MIR 70 158 -104 601 224 41 61 chr6 3766625 3766821 -178648421 - MER106A DNA MER1_type -43 193 2 1515 211 95 91 chr6 3766822 3767550 -178647692 + L1MC5 LINE L1 7199 7929 -32 188 278 83 53 chr6 3767857 3767990 -178647252 + MIR SINE MIR 10 146 -116 392 317 47 27 chr6 3768028 3768441 -178646801 - LTR67 LTR ERVL -35 522 24 187 323 0 0 chr6 3769002 3769067 -178646175 + MIR SINE MIR 158 222 -40 306 234 96 0 chr6 3770936 3771030 -178644212 + MIR SINE MIR 90 192 -70 7093 236 129 18 chr6 3771111 3773654 -178641588 + L1ME LINE L1 2389 5283 -881 212 59 29 0 chr6 3773654 3773688 -178641554 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 7093 236 129 18 chr6 3773688 3773965 -178641277 + L1ME LINE L1 5283 5528 -636 188 299 164 28 chr6 3774046 3774094 -178641148 - MIR SINE MIR -57 205 165 393 22 0 0 chr6 3774094 3774140 -178641102 + (TTA)n Simple_repeat Simple_repeat 2 47 0 188 299 164 28 chr6 3774140 3774268 -178640974 - MIR SINE MIR -97 165 5 926 158 0 23 chr6 3774626 3774797 -178640445 - MER5A DNA MER1_type 0 189 23 339 280 26 90 chr6 3774855 3775044 -178640198 + MER5B DNA MER1_type 2 178 0 288 350 10 0 chr6 3775058 3775158 -178640084 + MER81 DNA DNA 1 101 -13 540 224 82 35 chr6 3775199 3775369 -178639873 - MER5B DNA MER1_type 0 178 1 38741 83 12 7 chr6 3776670 3782790 -178632452 - L1PA6 LINE L1 0 6154 11 2248 233 26 6 chr6 3782906 3783447 -178631795 + L1M4 LINE L1 3819 4370 -1776 582 338 103 11 chr6 3784436 3784803 -178630439 + LTR33A LTR ERVL 67 467 -56 748 121 0 0 chr6 3785488 3785604 -178629638 - L1MA7 LINE L1 -17 6274 6159 1650 203 27 63 chr6 3785954 3786531 -178628711 - L1MB7 LINE L1 0 6334 5792 395 381 55 25 chr6 3786536 3786940 -178628302 - L3 LINE CR1 -1048 529 114 1412 193 24 17 chr6 3787252 3787575 -178627667 - L1MD3 LINE L1 0 7995 7577 201 74 0 0 chr6 3788526 3788553 -178626689 + (AATTG)n Simple_repeat Simple_repeat 2 28 0 2131 99 11 3 chr6 3789337 3789620 -178625622 + AluSp SINE Alu 3 287 -26 79 70 0 0 chr6 3789681 3789837 -178625405 + AT_rich Low_complexity Low_complexity 1 156 0 305 281 22 0 chr6 3790242 3790331 -178624911 - MIR SINE MIR -55 207 117 1154 165 29 25 chr6 3791113 3791355 -178623887 - L1ME1 LINE L1 -116 6050 5808 1824 220 97 14 chr6 3791758 3792295 -178622947 - MLT1F1 LTR MaLR 0 567 1 340 349 38 17 chr6 3793332 3793570 -178621672 - L1MDa LINE L1 -3597 2532 2290 305 265 79 53 chr6 3793600 3793789 -178621453 - L1MDa LINE L1 -3904 2225 2032 22 0 0 0 chr6 3793880 3793902 -178621340 + AT_rich Low_complexity Low_complexity 1 22 0 369 292 56 26 chr6 3794100 3794333 -178620909 - L1MDa LINE L1 -4514 1615 1376 438 279 69 54 chr6 3794480 3795000 -178620242 - L1MDa LINE L1 -4916 1203 676 2745 29 0 13 chr6 3795537 3795852 -178619390 + AluY SINE Alu 1 311 0 22 35 0 0 chr6 3796384 3796413 -178618829 + AT_rich Low_complexity Low_complexity 1 29 0 2321 82 0 0 chr6 3796417 3796699 -178618543 - AluY SINE Alu -29 282 1 2037 226 100 28 chr6 3796721 3797301 -178617941 + L1MD3 LINE L1 6518 7139 -856 2002 94 66 28 chr6 3797343 3797631 -178617611 + AluSc SINE Alu 1 299 -10 2600 248 43 11 chr6 3798593 3799298 -178615944 + L1MC4a LINE L1 7082 7808 0 788 96 37 29 chr6 3799304 3799355 -178615887 - L1MA4 LINE L1 -133 6167 6118 2139 167 27 50 chr6 3799355 3799561 -178615681 + Tigger2a DNA MER2_type 2 211 -2497 1782 184 0 7 chr6 3799561 3799855 -178615387 - AluJo SINE Alu -16 296 5 2139 167 27 50 chr6 3799855 3800091 -178615151 + Tigger2a DNA MER2_type 211 434 0 788 96 37 29 chr6 3800091 3800175 -178615067 - L1MA4 LINE L1 -182 6118 6031 650 106 99 80 chr6 3800163 3800314 -178614928 + L1MA5 LINE L1 6144 6297 -3 * 32 26 0 0 chr6 3800867 3800906 -178614336 + AT_rich Low_complexity Low_complexity 1 39 0 3518 67 25 2 chr6 3802504 3802979 -178612263 + LTR19A LTR ERV1 1 486 0 308 299 45 19 chr6 3803023 3803180 -178612062 - L2 LINE L2 -33 3280 3120 2113 249 66 45 chr6 3803200 3803522 -178611720 + MER21B LTR ERV1 15 329 -534 2977 155 46 4 chr6 3803522 3804026 -178611216 - LTR45 LTR ERV1 0 525 1 2113 249 66 45 chr6 3804026 3804413 -178610829 + MER21B LTR ERV1 329 739 -124 185 184 102 0 chr6 3804460 3804509 -178610733 - L2 LINE L2 -248 3065 3012 398 321 22 0 chr6 3804873 3805010 -178610232 - MIR SINE MIR -24 238 99 278 211 53 0 chr6 3805505 3805562 -178609680 - MER91A DNA MER1_type -14 182 123 333 240 149 78 chr6 3805744 3805995 -178609247 + MIR SINE MIR 2 262 0 2649 192 58 97 chr6 3806173 3806929 -178608313 + MER50 LTR ERV1 1 727 -7 201 242 0 0 chr6 3807327 3807418 -178607824 + (TG)n Simple_repeat Simple_repeat 2 92 0 189 303 13 26 chr6 3807984 3808060 -178607182 - L2 LINE L2 -19 3294 3220 718 106 10 0 chr6 3808261 3808365 -178606877 - LTR12 LTR ERV1 -130 584 480 369 231 11 0 chr6 3808365 3808456 -178606786 - LTR30 LTR ERV1 -79 643 552 964 98 379 15 chr6 3808463 3808666 -178606576 - LTR12 LTR ERV1 -432 282 6 2311 140 65 0 chr6 3808666 3809038 -178606204 + MSTA LTR MaLR 33 428 0 958 305 70 40 chr6 3809052 3809722 -178605520 - L2 LINE L2 -257 3015 2328 601 329 133 16 chr6 3809725 3810227 -178605015 - L2 LINE L2 -1589 1725 1165 233 378 0 0 chr6 3810235 3810317 -178604925 + MIR SINE MIR 181 262 0 287 278 268 20 chr6 3810352 3810550 -178604692 - L2 LINE L2 -2145 1169 923 4488 192 51 36 chr6 3810556 3812065 -178603177 + L1MB3 LINE L1 4627 6177 -6 344 300 0 11 chr6 3812078 3812168 -178603074 + L1MC4 LINE L1 6614 6702 -1340 319 215 0 131 chr6 3812110 3812217 -178603025 - L1MC4 LINE L1 -1336 6706 6614 * 344 345 31 11 chr6 3812247 3812438 -178602804 - L2 LINE L2 -2393 921 727 1394 186 34 34 chr6 3813656 3813947 -178601295 - AluJo SINE Alu -21 291 1 310 348 89 26 chr6 3814009 3814311 -178600931 + L2 LINE L2 2909 3229 -43 656 314 83 4 chr6 3815545 3815787 -178599455 - MIR SINE MIR 0 262 2 1077 76 8 0 chr6 3815840 3815972 -178599270 + AluSq/x SINE Alu 1 133 -180 2158 119 13 6 chr6 3815975 3816286 -178598956 + AluSq SINE Alu 1 313 0 986 157 13 6 chr6 3816613 3816772 -178598470 + AluJb SINE Alu 134 293 -19 423 0 0 0 chr6 3816887 3816934 -178598308 + (TG)n Simple_repeat Simple_repeat 2 48 0 221 233 0 0 chr6 3816937 3816980 -178598262 + GA-rich Low_complexity Low_complexity 4 46 0 249 340 19 10 chr6 3817761 3817864 -178597378 - L2 LINE L2 -3 3310 3207 271 305 0 24 chr6 3818330 3818412 -178596830 + L2 LINE L2 3176 3255 -17 22 0 0 0 chr6 3818894 3818916 -178596326 + AT_rich Low_complexity Low_complexity 1 22 0 265 193 0 18 chr6 3819180 3819237 -178596005 + MLT1H LTR MaLR 6 61 -488 326 240 53 59 chr6 3819350 3819630 -178595612 + MLT1H LTR MaLR 229 549 0 325 292 42 33 chr6 3819686 3819806 -178595436 + L1MC/D LINE L1 5642 5762 -2046 1002 265 138 19 chr6 3819811 3820347 -178594895 + L1MC4a LINE L1 5519 6118 -1690 608 288 42 17 chr6 3820347 3820583 -178594659 + L2 LINE L2 1843 2084 -1230 482 249 130 23 chr6 3820710 3820887 -178594355 + L2 LINE L2 2072 2267 -1047 1545 184 4 15 chr6 3820891 3821163 -178594079 + AluJo SINE Alu 30 298 -14 2326 185 43 13 chr6 3822806 3823337 -178591905 + MER74A LTR ERVL 8 554 -4 7869 148 78 60 chr6 3824041 3825811 -178589431 - pTR5 LTR ERV1 -14 2424 65 640 267 51 33 chr6 3825960 3826293 -178588949 + Charlie8 DNA MER1_type 78 265 -2152 21 36 0 0 chr6 3827112 3827140 -178588102 + AT_rich Low_complexity Low_complexity 1 28 0 300 269 46 28 chr6 3828455 3828563 -178586679 - L2 LINE L2 0 3313 3204 1699 87 79 0 chr6 3832626 3832878 -178582364 - L1PB2 LINE L1 -2 6149 5878 269 311 44 0 chr6 3833111 3833201 -178582041 + MIR3 SINE MIR 104 197 -11 484 192 233 17 chr6 3835362 3835534 -178579708 + MIR SINE MIR 40 248 -14 1472 286 42 25 chr6 3836035 3836634 -178578608 - L1MC4a LINE L1 -128 7680 7072 184 255 0 0 chr6 3838619 3838666 -178576576 - L3 LINE CR1 -750 827 781 1211 101 39 119 chr6 3839193 3839285 -178575957 + L1 LINE L1 4557 4655 -1491 1721 164 87 0 chr6 3839285 3839572 -178575670 + AluJo SINE Alu 1 312 0 1211 101 39 119 chr6 3839572 3839765 -178575477 + L1 LINE L1 4655 4819 -1327 427 77 0 0 chr6 3839866 3839918 -178575324 + AluJ/FRAM SINE Alu 217 268 -44 886 97 0 0 chr6 3839919 3840033 -178575209 - AluSg SINE Alu -196 114 1 182 236 11 112 chr6 3840233 3840322 -178574920 + MER5A DNA MER1_type 49 128 -61 814 152 0 0 chr6 3840322 3840447 -178574795 + FRAM SINE Alu 39 163 -13 332 151 68 14 chr6 3840457 3840530 -178574712 - FLAM_A SINE Alu -27 106 30 524 287 32 43 chr6 3841829 3842017 -178573225 + L1ME4a LINE L1 5862 6047 -74 373 210 33 136 chr6 3843049 3843356 -178571886 - MER112 DNA MER1_type -6 254 1 318 146 24 122 chr6 3843489 3843571 -178571671 - LTR56 LTR ERV1 -176 269 196 324 128 39 64 chr6 3843585 3843663 -178571579 - LTR56 LTR ERV1 -369 76 1 709 219 30 25 chr6 3843664 3843865 -178571377 - L1ME1 LINE L1 -121 6045 5844 192 288 9 63 chr6 3844268 3844379 -178570863 + L2 LINE L2 2831 2935 -337 334 282 19 0 chr6 3844693 3844796 -178570446 + MER103 DNA DNA 54 158 -8 2258 79 0 7 chr6 3844970 3845250 -178569992 - AluSc SINE Alu -20 289 12 198 256 51 95 chr6 3846396 3846533 -178568709 + L2 LINE L2 3137 3267 -5 462 260 137 39 chr6 3847326 3847530 -178567712 - MER58A DNA MER1_type 0 224 1 306 284 0 21 chr6 3847562 3847657 -178567585 + L2 LINE L2 3221 3313 0 563 246 84 0 chr6 3848434 3848576 -178566666 - MER63A DNA MER1_type -8 202 49 517 292 99 9 chr6 3848625 3848859 -178566383 + MIR SINE MIR 6 262 0 733 299 53 73 chr6 3849632 3850164 -178565078 - LTR67 LTR ERVL -2 555 35 747 276 97 62 chr6 3850166 3850208 -178565034 - MLT1L LTR MaLR -6 609 570 2086 116 3 3 chr6 3850208 3850531 -178564711 + AluSx SINE Alu 1 323 0 747 276 97 62 chr6 3850531 3850650 -178564592 - MLT1L LTR MaLR -45 570 457 2416 115 0 0 chr6 3850650 3850962 -178564280 + AluSx SINE Alu 1 312 0 747 276 97 62 chr6 3850962 3851200 -178564042 - MLT1L LTR MaLR -158 457 194 611 301 5 0 chr6 3851376 3851562 -178563680 + MER117 DNA MER1_type 3 189 -8 781 263 46 29 chr6 3852156 3852396 -178562846 - MIR SINE MIR 0 262 19 275 218 65 99 chr6 3852443 3852578 -178562664 - MIR SINE MIR -76 132 27 399 212 146 22 chr6 3852771 3852908 -178562334 + MIR SINE MIR 90 243 -19 203 267 0 0 chr6 3853436 3853481 -178561761 + L2 LINE L2 3181 3225 -88 236 244 0 0 chr6 3853531 3853576 -178561666 + (TGGG)n Simple_repeat Simple_repeat 2 46 0 194 248 168 35 chr6 3854097 3854210 -178561032 - MIR SINE MIR -21 241 114 230 210 29 152 chr6 3854626 3854718 -178560524 + MER103 DNA DNA 36 107 -59 2474 88 0 3 chr6 3854718 3855026 -178560216 + AluSq SINE Alu 1 307 -6 230 210 29 152 chr6 3855026 3855071 -178560171 + MER103 DNA DNA 107 156 -10 180 348 0 14 chr6 3855557 3855626 -178559616 - MIR SINE MIR -125 83 16 359 248 34 34 chr6 3856810 3856927 -178558315 + MIR SINE MIR 1 117 -145 1539 252 88 13 chr6 3857076 3857600 -178557642 + MER115 DNA AcHobo 124 686 -7 871 196 36 0 chr6 3857761 3857929 -178557313 - AluJo SINE Alu -19 293 120 191 330 181 11 chr6 3858228 3858322 -178556920 + L2 LINE L2 3156 3265 -7 669 183 0 7 chr6 3858602 3858739 -178556503 - L1MA4 LINE L1 -4 6296 6161 312 232 24 56 chr6 3858843 3858968 -178556274 + L1ME4a LINE L1 5806 5926 -195 2204 136 3 0 chr6 3859107 3859417 -178555825 + AluSx SINE Alu 1 311 -1 228 243 49 135 chr6 3859601 3859786 -178555456 + MLT1J2 LTR MaLR 1 169 -281 387 259 49 0 chr6 3859843 3859957 -178555285 - MIR SINE MIR -41 221 103 22 35 0 0 chr6 3860107 3860136 -178555106 + AT_rich Low_complexity Low_complexity 1 29 0 1962 107 0 0 chr6 3860197 3860450 -178554792 + AluSq SINE Alu 1 253 -60 1958 160 21 27 chr6 3860561 3860937 -178554305 - THE1C LTR MaLR 0 375 2 496 97 14 0 chr6 3861335 3861407 -178553835 - MER58 DNA MER1_type -6 2414 2342 1166 84 0 0 chr6 3861458 3861600 -178553642 - AluSg/x SINE Alu -10 300 159 269 267 89 20 chr6 3861650 3861751 -178553491 - MLT1J LTR MaLR -1 510 403 625 119 0 0 chr6 3861968 3862052 -178553190 + AluSg/x SINE Alu 128 211 -99 202 61 61 0 chr6 3862054 3862087 -178553155 + A-rich Low_complexity Low_complexity 1 35 0 284 117 0 50 chr6 3862111 3862171 -178553071 + L1PB3 LINE L1 6096 6152 -2 436 260 167 0 chr6 3862222 3862372 -178552870 + MER5A DNA MER1_type 9 183 -6 472 257 135 7 chr6 3862388 3862536 -178552706 - MER5B DNA MER1_type -4 174 8 327 266 16 31 chr6 3864835 3864977 -178550265 + LTR16C LTR ERVL 332 457 0 2319 107 7 0 chr6 3866505 3866805 -178548437 + AluSq SINE Alu 1 302 -11 2261 95 0 17 chr6 3867473 3867768 -178547474 + AluSx SINE Alu 2 291 -21 752 252 174 60 chr6 3867818 3868271 -178546971 - MLT1J LTR MaLR -1 510 6 252 318 85 16 chr6 3869457 3869586 -178545656 - MIR SINE MIR -55 207 70 1523 199 117 103 chr6 3869601 3869906 -178545336 + MER21B LTR ERV1 13 312 -551 2386 88 0 0 chr6 3869906 3870202 -178545040 - AluY SINE Alu -14 297 2 1523 199 117 103 chr6 3870202 3870564 -178544678 + MER21B LTR ERV1 312 689 -174 355 252 41 61 chr6 3871229 3871376 -178543866 - MIR3 SINE MIR -52 156 13 225 152 43 0 chr6 3872131 3872177 -178543065 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 342 315 0 22 chr6 3872177 3872269 -178542973 + L1MC4 LINE L1 6617 6706 -1336 957 223 155 38 chr6 3872463 3872831 -178542411 + MLT1F1 LTR MaLR 1 436 -131 2390 185 32 13 chr6 3872858 3873383 -178541859 - L1MB7 LINE L1 -16 6168 5634 3150 189 18 46 chr6 3873493 3874549 -178540693 - L1ME LINE L1 -463 6510 5500 2429 235 62 38 chr6 3874549 3874838 -178540404 - L1ME LINE L1 -4683 2276 1995 234 0 0 0 chr6 3874838 3874864 -178540378 + (ATATG)n Simple_repeat Simple_repeat 2 27 0 2429 235 62 38 chr6 3874864 3875460 -178539782 - L1ME LINE L1 -4964 1995 1365 2126 133 0 32 chr6 3875460 3875775 -178539467 - AluSx SINE Alu -7 305 1 2429 235 62 38 chr6 3875775 3875954 -178539288 - L1ME LINE L1 -5594 1365 1192 1147 204 0 62 chr6 3876190 3876465 -178538777 - L1ME LINE L1 -5643 1216 959 243 337 71 18 chr6 3877091 3877260 -178537982 - L1ME LINE L1 -6659 200 23 252 256 31 70 chr6 3877439 3877568 -178537674 + L1MC4a LINE L1 6055 6178 -1630 2148 106 0 32 chr6 3877576 3877887 -178537355 + AluSc SINE Alu 1 301 -8 433 209 22 67 chr6 3878079 3878213 -178537029 - L1MA7 LINE L1 -234 6057 5930 1449 196 7 29 chr6 3878319 3878600 -178536642 - AluJo SINE Alu -7 305 31 384 234 227 0 chr6 3879129 3879257 -178535985 + MER5A DNA MER1_type 27 183 -6 180 344 16 0 chr6 3879254 3879318 -178535924 + L3b LINE CR1 1519 1583 0 * 304 271 125 0 chr6 3879804 3879900 -178535342 + MIR SINE MIR 36 143 -65 381 309 31 50 chr6 3880110 3880369 -178534873 - L1MC4a LINE L1 -1818 5990 5737 230 237 92 13 chr6 3880424 3880457 -178534785 - MIR SINE MIR -21 241 212 2196 105 17 7 chr6 3880457 3880752 -178534490 - AluSx SINE Alu -14 298 1 230 237 92 13 chr6 3880752 3880794 -178534448 - MIR SINE MIR -50 212 160 492 271 19 15 chr6 3880938 3881227 -178534015 + MLT1A2 LTR MaLR 33 320 -70 * 748 140 7 22 chr6 3881210 3881346 -178533896 + MLT1A1 LTR MaLR 232 365 0 841 208 71 30 chr6 3881635 3881971 -178533271 - MSTD LTR MaLR -7 389 1 2162 128 3 0 chr6 3882352 3882658 -178532584 - AluSx SINE Alu -1 311 5 917 217 87 93 chr6 3882973 3883172 -178532070 - MER2 DNA MER2_type -1 343 145 1552 191 4 0 chr6 3883172 3883449 -178531793 + AluJo SINE Alu 33 310 -2 917 217 87 93 chr6 3883449 3883594 -178531648 - MER2 DNA MER2_type -199 145 1 219 240 0 0 chr6 3884010 3884060 -178531182 + (CA)n Simple_repeat Simple_repeat 1 50 0 195 242 121 22 chr6 3884352 3884443 -178530799 - MIR3 SINE MIR -8 200 101 257 86 0 0 chr6 3884862 3884897 -178530345 + Alu SINE Alu 9 43 -265 379 291 153 0 chr6 3885972 3886131 -178529111 - MIR SINE MIR -47 215 41 5257 140 53 26 chr6 3886303 3887814 -178527428 + pTR5 LTR ERV1 743 2432 -6 1638 190 0 7 chr6 3887909 3888198 -178527044 + AluSx SINE Alu 1 287 -25 2183 113 3 0 chr6 3888851 3889143 -178526099 - AluSx SINE Alu -19 293 1 1728 113 92 18 chr6 3889143 3889425 -178525817 - AluJo SINE Alu -5 307 5 400 126 137 32 chr6 3889902 3889997 -178525245 + FLAM_A SINE Alu 38 142 0 21 0 0 0 chr6 3890154 3890175 -178525067 + AT_rich Low_complexity Low_complexity 1 21 0 634 269 48 0 chr6 3890296 3890463 -178524779 + MER5B DNA MER1_type 2 176 -2 435 221 188 0 chr6 3891395 3891544 -178523698 + MER53 DNA DNA 6 182 -7 2106 99 0 11 chr6 3895875 3896159 -178519083 - AluSx SINE Alu -24 288 8 317 369 87 34 chr6 3896532 3896738 -178518504 - MIR SINE MIR -30 232 16 1027 228 197 46 chr6 3898272 3899075 -178516167 + L2 LINE L2 2346 3310 -3 276 286 0 0 chr6 3899383 3899481 -178515761 - LTR50 LTR ERVL -123 672 575 482 282 8 8 chr6 3901052 3901169 -178514073 - L2 LINE L2 -4 3309 3193 2336 115 0 6 chr6 3901301 3901615 -178513627 + AluSx SINE Alu 1 312 0 271 160 40 0 chr6 3901787 3901837 -178513405 + MLT1C LTR MaLR 1 52 -415 782 238 24 29 chr6 3901862 3902072 -178513170 - MER20 DNA MER1_type -4 215 7 2696 37 0 0 chr6 3902102 3902402 -178512840 + AluY SINE Alu 1 300 -11 2700 143 27 6 chr6 3902402 3902876 -178512366 + MER34C LTR ERV1 102 585 0 245 311 61 40 chr6 3902889 3903037 -178512205 + MARNA DNA Mariner 62 212 -374 2099 135 0 3 chr6 3903199 3903502 -178511740 + AluSx SINE Alu 2 303 -9 264 59 0 0 chr6 3905364 3905398 -178509844 + (TG)n Simple_repeat Simple_repeat 2 35 0 2272 112 3 0 chr6 3906981 3907277 -178507965 + AluSq SINE Alu 1 297 -16 519 298 22 31 chr6 3907638 3907863 -178507379 - MER58A DNA MER1_type 0 224 2 723 239 48 21 chr6 3908926 3909114 -178506128 - MIR SINE MIR -13 249 57 2126 114 3 26 chr6 3909312 3909448 -178505794 + AluSg SINE Alu 1 139 -171 2236 100 3 7 chr6 3909448 3909737 -178505505 + AluSx SINE Alu 4 291 -21 2126 114 3 26 chr6 3909737 3909908 -178505334 + AluSg SINE Alu 139 301 -9 3779 141 8 2 chr6 3910468 3911071 -178504171 - L1MB3 LINE L1 -2 6181 5575 805 258 40 59 chr6 3911585 3911907 -178503335 - MER102b DNA MER1_type -25 316 1 261 215 0 0 chr6 3912159 3912224 -178503018 + MER69 DNA AcHobo 260 324 -2202 667 294 77 45 chr6 3912276 3912805 -178502437 + MER115 DNA AcHobo 97 693 0 1651 248 138 11 chr6 3912830 3913350 -178501892 - MLT1G LTR MaLR 0 590 5 303 211 0 0 chr6 3913354 3913411 -178501831 + MER69 DNA AcHobo 341 397 -829 1020 184 89 53 chr6 3913412 3913716 -178501526 + MER69 DNA AcHobo 1955 2269 -257 256 309 12 0 chr6 3914039 3914123 -178501119 - L2 LINE L2 -317 2955 2871 1947 123 7 16 chr6 3914939 3915247 -178499995 - AluSx SINE Alu -6 306 2 386 304 53 23 chr6 3915330 3915501 -178499741 + MIR3 SINE MIR 3 172 -36 21 0 0 0 chr6 3915955 3915976 -178499266 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 3916402 3916430 -178498812 + AT_rich Low_complexity Low_complexity 1 28 0 252 143 0 0 chr6 3916448 3916490 -178498752 + (A)n Simple_repeat Simple_repeat 1 42 0 407 283 139 55 chr6 3916624 3917030 -178498212 + L1ME4a LINE L1 5564 5991 -171 24 0 0 0 chr6 3917086 3917110 -178498132 + AT_rich Low_complexity Low_complexity 1 24 0 321 251 42 19 chr6 3917537 3917675 -178497567 + L1MC/D LINE L1 5694 5835 -286 225 200 0 0 chr6 3917787 3917832 -178497410 + T-rich Low_complexity Low_complexity 1 45 0 333 191 143 19 chr6 3917874 3917979 -178497263 - L1ME1 LINE L1 -5 6161 6044 377 192 90 0 chr6 3917980 3918058 -178497184 - LTR23 LTR ERV1 0 437 353 2232 80 0 7 chr6 3918133 3918458 -178496784 + AluY SINE Alu 1 323 0 701 88 78 0 chr6 3918459 3918561 -178496681 - AluSg SINE Alu -199 111 2 543 257 48 16 chr6 3918783 3918970 -178496272 - L1ME1 LINE L1 -18 6148 5956 2395 179 22 2 chr6 3918976 3919389 -178495853 + MSTB1 LTR MaLR 2 422 -10 621 174 14 14 chr6 3919402 3919540 -178495702 - L1ME1 LINE L1 -215 5951 5814 2001 130 7 0 chr6 3919565 3919864 -178495378 - AluY SINE Alu -10 301 1 921 113 8 0 chr6 3919865 3919998 -178495244 - AluSq/x SINE Alu -179 134 1 391 191 112 0 chr6 3919998 3920087 -178495155 - L1ME1 LINE L1 -341 5825 5727 870 191 0 23 chr6 3920087 3920260 -178494982 - FRAM SINE Alu -6 170 2 767 203 80 0 chr6 3920268 3920431 -178494811 - L1ME1 LINE L1 -502 5664 5489 1546 199 28 72 chr6 3920431 3920819 -178494423 + MSTD LTR MaLR 1 371 -25 1062 229 87 81 chr6 3920932 3921390 -178493852 + MLT1H LTR MaLR 77 537 -12 288 183 97 43 chr6 3921767 3921860 -178493382 - MER5A DNA MER1_type -83 106 9 562 278 29 0 chr6 3921896 3922069 -178493173 - MER5B DNA MER1_type 0 178 1 1813 110 4 0 chr6 3922767 3923021 -178492221 + AluSg SINE Alu 1 255 -55 2919 145 22 0 chr6 3923121 3923611 -178491631 + L1MA6 LINE L1 5799 6299 -1 580 131 0 0 chr6 3925749 3925833 -178489409 - AluS SINE Alu -224 89 6 2192 104 0 0 chr6 3926336 3926635 -178488607 - AluSc SINE Alu -8 301 3 3069 158 19 14 chr6 3927044 3927062 -178488180 - LTR45 LTR ERV1 -2 523 507 2502 101 59 0 chr6 3927062 3927418 -178487824 - MER51B LTR ERV1 0 377 1 3069 158 19 14 chr6 3927418 3927919 -178487323 - LTR45 LTR ERV1 -18 507 1 266 232 182 0 chr6 3929402 3929501 -178485741 + MER103 DNA DNA 2 118 -48 10843 128 30 8 chr6 3929933 3931960 -178483282 + Tigger1 DNA MER2_type 1 2418 0 189 341 34 0 chr6 3931973 3932061 -178483181 + L2 LINE L2 2666 2756 -558 266 88 0 0 chr6 3932173 3932207 -178483035 + Alu SINE Alu 1 34 -266 2410 253 102 35 chr6 3982243 3983145 -178432097 - ERVL LTR ERVL -637 5127 4166 580 227 122 46 chr6 3983225 3983529 -178431713 - HAL1 LINE L1 -1069 1438 1112 375 254 24 73 chr6 3983553 3983718 -178431524 - L1MD2 LINE L1 -2 6357 6201 1739 235 87 5 chr6 3985050 3985561 -178429681 - L1MD2 LINE L1 -147 6212 5664 556 247 35 56 chr6 3985562 3985685 -178429557 - HAL1 LINE L1 -1427 1080 956 2172 115 7 3 chr6 3985685 3985990 -178429252 - AluSx SINE Alu -6 306 1 556 247 35 56 chr6 3985990 3986153 -178429089 - HAL1 LINE L1 -1551 956 800 571 139 0 46 chr6 3986198 3986306 -178428936 - MLT1J2 LTR MaLR -2 448 346 374 299 28 40 chr6 3986377 3986554 -178428688 + HAL1 LINE L1 2258 2432 -75 1863 149 41 24 chr6 3986767 3987136 -178428106 - THE1C LTR MaLR 0 375 1 309 284 45 0 chr6 3987395 3987483 -178427759 - L1MD2 LINE L1 -863 5283 5192 276 257 0 53 chr6 3987483 3987599 -178427643 - MIR SINE MIR -97 111 17 3032 126 6 12 chr6 3987646 3988140 -178427102 + L1PA13 LINE L1 5666 6156 -7 478 269 58 32 chr6 3988154 3988310 -178426932 + MIR SINE MIR 24 183 -79 23 33 0 0 chr6 3988363 3988393 -178426849 + AT_rich Low_complexity Low_complexity 1 30 0 577 274 18 39 chr6 3988777 3989058 -178426184 + MARNA DNA Mariner 191 465 -121 2375 124 5 22 chr6 3989357 3989727 -178425515 + THE1B LTR MaLR 1 364 0 708 181 9 0 chr6 3990989 3991105 -178424137 + FLAM_C SINE Alu 1 117 -16 216 0 0 0 chr6 3991111 3991135 -178424107 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2420 84 0 0 chr6 3991717 3992044 -178423198 + AluSc SINE Alu 1 309 0 962 174 0 0 chr6 3992123 3992284 -178422958 - FRAM SINE Alu -4 172 12 295 281 0 0 chr6 3995071 3995135 -178420107 - L2 LINE L2 -5 3267 3204 2282 92 0 10 chr6 3995598 3995904 -178419338 + AluSg SINE Alu 1 303 -7 760 172 85 68 chr6 3995905 3996128 -178419114 - MLT1C LTR MaLR 0 467 178 2332 83 3 0 chr6 3996128 3996428 -178418814 - AluSc SINE Alu -6 303 3 760 172 85 68 chr6 3996428 3996488 -178418754 - MLT1C LTR MaLR -289 178 120 804 214 144 28 chr6 3996488 3996773 -178418469 - LTR36 LTR ERV1 -1 610 293 326 185 0 0 chr6 3996940 3997003 -178418239 - MLT1C LTR MaLR -263 127 65 3093 116 22 41 chr6 3997003 3997588 -178417654 + MER4B LTR ERV1 1 574 -36 412 95 0 81 chr6 3997619 3997693 -178417549 - MLT1C LTR MaLR -399 68 1 1630 241 47 9 chr6 3997730 3998154 -178417088 + MER21B LTR ERV1 12 451 -412 883 121 0 0 chr6 3998163 3998287 -178416955 - FRAM SINE Alu -1 175 52 3595 138 98 8 chr6 3998287 3998938 -178416304 - MER50 LTR ERV1 -24 710 1 329 210 0 0 chr6 3998938 3998996 -178416246 - AluJ/FLAM SINE Alu -244 58 1 850 254 50 53 chr6 3999004 3999342 -178415900 + MER21B LTR ERV1 466 802 -61 2337 104 0 0 chr6 3999759 4000057 -178415185 + AluSq SINE Alu 1 298 -15 240 309 0 0 chr6 4000115 4000196 -178415046 + L1ME LINE L1 4263 4343 -1803 648 260 61 25 chr6 4000609 4000638 -178414604 + MIR SINE MIR 52 79 -183 1775 161 27 3 chr6 4000638 4000930 -178414312 + AluJb SINE Alu 4 302 -10 648 260 61 25 chr6 4000930 4001096 -178414146 + MIR SINE MIR 79 254 -8 2084 133 3 0 chr6 4001240 4001540 -178413702 + AluSx SINE Alu 1 301 -11 297 293 81 17 chr6 4001622 4001796 -178413446 + L1ME LINE L1 5477 5661 -460 244 333 29 29 chr6 4003519 4003624 -178411618 - L2 LINE L2 -8 3305 3201 716 85 171 0 chr6 4003624 4003753 -178411489 + LTR24C LTR ERV1 1 151 -484 263 309 31 10 chr6 4003839 4003936 -178411306 - L2 LINE L2 -480 2834 2736 335 67 0 50 chr6 4004383 4004443 -178410799 + (A)n Simple_repeat Simple_repeat 1 57 0 1019 119 0 0 chr6 4004494 4004628 -178410614 + AluSq/x SINE Alu 2 135 -177 1849 162 3 7 chr6 4004628 4004924 -178410318 + AluSx SINE Alu 1 295 -17 1690 144 39 35 chr6 4006672 4006957 -178408285 + AluJo SINE Alu 1 286 -26 570 230 118 6 chr6 4007309 4007470 -178407772 + MIR SINE MIR 57 235 -27 1880 59 0 0 chr6 4007553 4007774 -178407468 - AluY SINE Alu -17 294 74 1871 153 3 10 chr6 4008665 4008965 -178406277 + AluJb SINE Alu 1 298 -14 339 313 108 5 chr6 4009324 4009519 -178405723 + LTR16A LTR ERVL 158 372 -78 525 298 180 13 chr6 4009851 4010167 -178405075 - MLT1I LTR MaLR 0 409 41 1921 139 38 46 chr6 4010296 4010642 -178404600 + MER2 DNA MER2_type 1 343 -1 234 267 174 0 chr6 4010749 4010835 -178404407 - L2 LINE L2 -4 3309 3209 1039 115 4 106 chr6 4010954 4011189 -178404053 + L1MB7 LINE L1 5907 6117 -67 2396 66 0 7 chr6 4011221 4011524 -178403718 - AluY SINE Alu -10 301 1 351 44 0 0 chr6 4011527 4011572 -178403670 + (T)n Simple_repeat Simple_repeat 1 45 0 619 263 108 44 chr6 4011744 4013000 -178402242 + L1M4 LINE L1 3790 5167 -979 2238 104 3 10 chr6 4013001 4013310 -178401932 + AluSg SINE Alu 1 307 -3 2089 95 0 0 chr6 4013337 4013601 -178401641 + AluSq SINE Alu 1 264 -49 468 273 43 91 chr6 4013853 4014084 -178401158 - MIR SINE MIR -42 220 1 201 209 0 47 chr6 4014392 4014435 -178400807 + L2 LINE L2 3215 3255 -17 22 56 0 0 chr6 4014558 4014594 -178400648 + AT_rich Low_complexity Low_complexity 1 36 0 478 295 61 120 chr6 4015340 4015480 -178399762 - L2 LINE L2 -1 3312 3165 2212 100 13 0 chr6 4015480 4015779 -178399463 + AluSp SINE Alu 1 303 -10 478 295 61 120 chr6 4015779 4016198 -178399044 - L2 LINE L2 -148 3165 2768 1042 134 6 39 chr6 4016344 4016523 -178398719 - FRAM SINE Alu -1 175 3 739 209 60 0 chr6 4017045 4017260 -178397982 + Charlie1 DNA MER1_type 2534 2761 0 410 289 170 7 chr6 4017663 4017798 -178397444 + MER5A DNA MER1_type 33 189 0 431 355 38 12 chr6 4018096 4018440 -178396802 + L1MEc LINE L1 32 384 -6012 5550 173 22 18 chr6 4018545 4019455 -178395787 + L1 LINE L1 4081 4997 -1149 2033 125 31 7 chr6 4019455 4019744 -178395498 + AluSx SINE Alu 1 296 -16 5550 173 22 18 chr6 4019744 4020030 -178395212 + L1 LINE L1 4997 5281 -865 1038 169 0 28 chr6 4020039 4020216 -178395026 + AluJo SINE Alu 16 187 -125 1139 148 0 44 chr6 4020218 4020421 -178394821 + AluJo SINE Alu 119 312 0 1062 251 117 39 chr6 4020422 4021001 -178394241 + L1MEc LINE L1 1737 2347 -3868 2115 107 0 0 chr6 4021001 4021316 -178393926 + AluSg SINE Alu 1 315 0 1062 251 117 39 chr6 4021316 4021581 -178393661 + L1MEc LINE L1 2347 2590 -3625 1007 289 150 28 chr6 4021644 4022039 -178393203 + L2 LINE L2 2339 2809 -505 754 189 8 0 chr6 4022039 4022171 -178393071 - FLAM_C SINE Alu 0 133 1 1007 289 150 28 chr6 4022171 4022276 -178392966 + L2 LINE L2 2809 2900 -414 2244 85 0 0 chr6 4022333 4022645 -178392597 + AluSg SINE Alu 1 312 0 24 0 0 0 chr6 4022710 4022734 -178392508 + AT_rich Low_complexity Low_complexity 1 24 0 326 327 152 14 chr6 4022965 4023176 -178392066 - MIR SINE MIR -21 241 2 303 257 88 22 chr6 4023355 4023491 -178391751 + L1ME4a LINE L1 5944 6088 -33 349 301 114 10 chr6 4025253 4025433 -178389809 + MIR SINE MIR 13 206 -2 1890 84 73 14 chr6 4025499 4025785 -178389457 - AluSq SINE Alu -10 303 1 2312 65 17 3 chr6 4025985 4026278 -178388964 - AluSx SINE Alu -14 298 2 198 0 0 0 chr6 4027833 4027855 -178387387 + (T)n Simple_repeat Simple_repeat 1 22 0 207 88 0 0 chr6 4028132 4028166 -178387076 + (T)n Simple_repeat Simple_repeat 1 34 0 880 192 62 6 chr6 4028988 4029165 -178386077 - MIR SINE MIR -74 188 2 1111 183 48 60 chr6 4029386 4029551 -178385691 - AluJb SINE Alu -3 309 147 2168 113 0 0 chr6 4029551 4029843 -178385399 - AluSc SINE Alu -17 292 1 1111 183 48 60 chr6 4029843 4029928 -178385314 - AluJb SINE Alu -165 147 62 540 187 0 0 chr6 4029931 4030022 -178385220 + FLAM_A SINE Alu 31 121 -21 2145 110 14 3 chr6 4030291 4030582 -178384660 - AluSx SINE Alu -18 294 1 274 295 95 0 chr6 4031531 4031626 -178383616 - L2 LINE L2 -2 3311 3208 2366 90 0 7 chr6 4031682 4031982 -178383260 - AluSp SINE Alu -15 298 1 2155 114 3 3 chr6 4031982 4032281 -178382961 - AluSx SINE Alu -13 299 1 995 266 173 10 chr6 4032309 4032824 -178382418 - L2 LINE L2 -11 3302 2709 722 178 144 29 chr6 4032951 4033159 -178382083 - MIR SINE MIR -11 251 20 834 238 102 0 chr6 4033304 4033510 -178381732 - MIR SINE MIR -33 229 3 1612 179 9 57 chr6 4033866 4034184 -178381058 - AluJo SINE Alu -9 303 1 224 327 0 0 chr6 4034311 4034366 -178380876 + L2 LINE L2 353 407 -2907 1064 131 6 18 chr6 4034693 4034861 -178380381 - FRAM SINE Alu 0 166 1 1735 170 13 42 chr6 4035018 4035329 -178379913 - AluJb SINE Alu -8 304 3 2284 115 0 6 chr6 4035608 4035921 -178379321 - AluSx SINE Alu -1 311 1 286 211 53 0 chr6 4036425 4036501 -178378741 + MER116 DNA Mariner 1 80 0 204 40 0 0 chr6 4036668 4036693 -178378549 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 203 259 9 60 chr6 4037325 4037441 -178377801 + A-rich Low_complexity Low_complexity 5 114 0 483 276 115 36 chr6 4039919 4040223 -178375019 - L1MC4a LINE L1 -1971 5837 5510 2230 77 4 0 chr6 4040361 4040680 -178374562 - AluSg SINE Alu 0 329 10 180 111 0 0 chr6 4040750 4040777 -178374465 + (TA)n Simple_repeat Simple_repeat 2 28 0 2059 79 0 95 chr6 4040786 4041125 -178374117 - AluSx SINE Alu 0 309 1 1962 119 14 4 chr6 4041372 4041650 -178373592 + AluSp SINE Alu 9 289 -24 1774 184 0 0 chr6 4041918 4042200 -178373042 - AluJb SINE Alu -30 282 1 665 240 60 0 chr6 4042204 4042354 -178372888 - AluJb SINE Alu -17 295 137 1850 141 24 10 chr6 4042388 4042686 -178372556 + AluJb SINE Alu 3 304 -8 261 0 0 0 chr6 4043961 4043990 -178371252 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1392 125 35 39 chr6 4043995 4044227 -178371015 - AluSx SINE Alu -37 275 45 351 247 118 12 chr6 4044480 4044650 -178370592 - HAL1 LINE L1 -1088 1419 1232 513 289 179 37 chr6 4044664 4045340 -178369902 - HAL1 LINE L1 -1477 1030 259 228 86 0 0 chr6 4045501 4045536 -178369706 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1650 144 87 11 chr6 4045581 4045858 -178369384 - AluJb SINE Alu -14 298 1 358 224 187 0 chr6 4045937 4046071 -178369171 - L1ME2 LINE L1 -16 6148 5990 558 155 68 0 chr6 4046302 4046405 -178368837 - L1MC1 LINE L1 -5 6328 6219 1091 145 59 5 chr6 4047066 4047252 -178367990 + AluJb SINE Alu 108 303 -9 444 182 261 51 chr6 4047311 4047487 -178367755 + MER20 DNA MER1_type 7 219 0 344 234 26 0 chr6 4047827 4047904 -178367338 - MIR SINE MIR -61 147 69 1130 192 88 22 chr6 4049033 4049350 -178365892 - MER46C DNA MER2_type 0 338 1 850 174 0 153 chr6 4050055 4050388 -178364854 - L1MC5 LINE L1 -861 7100 6820 666 249 95 86 chr6 4050388 4050524 -178364718 - MER58B DNA MER1_type -2079 341 208 2369 58 10 7 chr6 4050524 4050837 -178364405 - AluY SINE Alu 0 314 1 666 249 95 86 chr6 4050837 4051037 -178364205 - MER58B DNA MER1_type -2212 208 1 850 174 0 153 chr6 4051037 4051330 -178363912 - L1MC5 LINE L1 -1141 6820 6476 1007 247 71 30 chr6 4051698 4052164 -178363078 - L1MC5 LINE L1 -2029 5779 5295 2162 114 3 0 chr6 4052339 4052636 -178362606 - AluSx SINE Alu -14 298 1 278 213 115 41 chr6 4052983 4053105 -178362137 + L1MC4 LINE L1 7906 8036 -6 405 0 0 0 chr6 4053580 4053625 -178361617 + (CA)n Simple_repeat Simple_repeat 2 46 0 2565 46 0 3 chr6 4053775 4054079 -178361163 + AluY SINE Alu 1 303 -8 1120 162 8 83 chr6 4054230 4054471 -178360771 - AluJo SINE Alu -5 307 85 2785 13 0 0 chr6 4055697 4056004 -178359238 - AluYa5 SINE Alu -4 307 1 2084 102 0 33 chr6 4056564 4056888 -178358354 - AluSx SINE Alu 0 312 1 2076 103 0 17 chr6 4056966 4057295 -178357947 - AluSq SINE Alu 0 313 1 454 174 22 22 chr6 4057931 4058050 -178357192 - AluSg/x SINE Alu 0 305 187 561 188 210 6 chr6 4059015 4059191 -178356051 - L1PA7 LINE L1 -1 6153 5942 1399 176 70 40 chr6 4059568 4059880 -178355362 - AluJo SINE Alu 0 320 1 2080 105 4 0 chr6 4060194 4060470 -178354772 - AluSc SINE Alu -20 289 13 23 33 0 0 chr6 4061929 4061959 -178353283 + AT_rich Low_complexity Low_complexity 1 30 0 1207 86 37 0 chr6 4063430 4063592 -178351650 - AluY SINE Alu -9 302 135 1115 165 36 45 chr6 4063689 4063913 -178351329 - AluJo SINE Alu -9 303 82 23 0 0 0 chr6 4064682 4064705 -178350537 + AT_rich Low_complexity Low_complexity 1 23 0 236 331 74 29 chr6 4064753 4064928 -178350314 + L2 LINE L2 2652 2834 -480 2066 122 3 23 chr6 4065319 4065623 -178349619 - AluSx SINE Alu -14 298 1 915 191 83 5 chr6 4065766 4065970 -178349272 - MER7A DNA MER2_type -117 229 12 21 0 0 0 chr6 4068187 4068208 -178347034 + AT_rich Low_complexity Low_complexity 1 21 0 848 168 48 12 chr6 4071292 4071459 -178343783 - AluSc SINE Alu -2 307 135 600 256 130 27 chr6 4072032 4072255 -178342987 - MIR SINE MIR -13 249 4 2213 96 31 0 chr6 4072900 4073191 -178342051 - AluSg1 SINE Alu -9 300 1 23 33 0 0 chr6 4073242 4073272 -178341970 + AT_rich Low_complexity Low_complexity 1 30 0 292 302 0 23 chr6 4073370 4073456 -178341786 + MER5A DNA MER1_type 8 91 -98 260 366 81 8 chr6 4073396 4073532 -178341710 - MER5A DNA MER1_type -22 167 11 * 22 0 0 0 chr6 4075600 4075622 -178339620 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 4075781 4075813 -178339429 + AT_rich Low_complexity Low_complexity 1 32 0 1638 201 30 0 chr6 4076401 4076704 -178338538 + AluJb SINE Alu 1 312 0 422 291 133 0 chr6 4077101 4077266 -178337976 - MIR SINE MIR -74 188 2 298 261 0 15 chr6 4077650 4077715 -178337527 + MER5A DNA MER1_type 123 186 -3 2144 114 10 0 chr6 4077739 4078037 -178337205 + AluSq SINE Alu 1 301 -12 776 58 58 33 chr6 4078037 4078157 -178337085 + L1PA8 LINE L1 6050 6172 0 2282 98 3 0 chr6 4078159 4078454 -178336788 + AluSp SINE Alu 1 296 -17 705 235 27 27 chr6 4078480 4078663 -178336579 + MIR SINE MIR 53 235 -27 27 0 0 0 chr6 4079061 4079088 -178336154 + AT_rich Low_complexity Low_complexity 1 27 0 1960 133 3 20 chr6 4079530 4079830 -178335412 - AluSx SINE Alu -17 295 1 2141 108 0 40 chr6 4080728 4081051 -178334191 + AluSx SINE Alu 1 310 -2 428 292 81 49 chr6 4081434 4081619 -178333623 + L3b LINE CR1 1303 1493 -90 232 81 0 27 chr6 4081635 4081672 -178333570 + MER5B DNA MER1_type 20 55 -123 2262 109 0 6 chr6 4081723 4082034 -178333208 + AluSx SINE Alu 1 309 -3 181 194 0 0 chr6 4082034 4082065 -178333177 + MER5A DNA MER1_type 111 141 -48 361 222 25 0 chr6 4082067 4082148 -178333094 + U13 snRNA snRNA 1 83 -21 2049 108 37 17 chr6 4082275 4082571 -178332671 + AluSx SINE Alu 1 302 -10 2589 63 0 0 chr6 4083728 4084030 -178331212 - AluSg SINE Alu -8 302 1 307 277 133 80 chr6 4084569 4084981 -178330261 - L1M2 LINE L1 -5826 1023 590 * 332 244 182 101 chr6 4084895 4085350 -178329892 + L1M2 LINE L1 776 1267 -5582 25 31 0 0 chr6 4085710 4085742 -178329500 + AT_rich Low_complexity Low_complexity 1 32 0 643 218 91 63 chr6 4085911 4086163 -178329079 + L2 LINE L2 3032 3290 -23 187 152 0 182 chr6 4086760 4086826 -178328416 + L2 LINE L2 3215 3268 -4 362 263 26 26 chr6 4086851 4086965 -178328277 - MIR SINE MIR -13 249 136 2140 104 3 35 chr6 4086972 4087290 -178327952 - AluSx SINE Alu -4 308 1 3725 103 68 6 chr6 4087985 4088531 -178326711 + MER39B LTR ERV1 1 580 -73 543 233 10 0 chr6 4088531 4088634 -178326608 - AluSc SINE Alu -93 216 113 2097 142 0 7 chr6 4089218 4089528 -178325714 - AluSx SINE Alu 0 312 5 207 108 27 0 chr6 4090990 4091027 -178324215 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 182 45 15 chr6 4091486 4091506 -178323736 + GA-rich Low_complexity Low_complexity 2 20 -49 1701 156 48 17 chr6 4091506 4091795 -178323447 + AluJo SINE Alu 1 298 -14 247 182 45 15 chr6 4091795 4091840 -178323402 + GA-rich Low_complexity Low_complexity 20 69 0 2365 98 3 0 chr6 4091843 4092150 -178323092 + AluSp SINE Alu 1 308 -5 1213 175 16 70 chr6 4093524 4093838 -178321404 - AluJo SINE Alu -15 297 1 2414 67 3 3 chr6 4093996 4094296 -178320946 - AluY SINE Alu -11 300 1 2090 112 34 3 chr6 4094753 4095047 -178320195 + AluSx SINE Alu 1 303 -9 1114 138 56 81 chr6 4095144 4095189 -178320053 - MLT1A1 LTR MaLR 0 365 320 2315 97 10 0 chr6 4095189 4095489 -178319753 + AluSq SINE Alu 1 303 -10 1114 138 56 81 chr6 4095489 4095686 -178319556 - MLT1A1 LTR MaLR -45 320 173 6019 117 208 86 chr6 4095687 4097156 -178318086 + pTR5 LTR ERV1 791 2438 0 592 183 32 40 chr6 4097195 4097321 -178317921 - MLT1A1 LTR MaLR -240 125 1 277 85 85 43 chr6 4097438 4097485 -178317757 + Tigger2 DNA MER2_type 1 49 -2669 258 250 24 97 chr6 4097490 4097614 -178317628 + LTR4 LTR ERV1 5 119 -477 764 232 28 46 chr6 4097851 4098135 -178317107 + LTR4 LTR ERV1 318 596 0 4123 131 29 50 chr6 4098135 4098256 -178316986 + Tigger2 DNA MER2_type 47 169 -2549 1929 126 7 0 chr6 4098256 4098526 -178316716 + AluSx SINE Alu 5 276 -36 4123 131 29 50 chr6 4098526 4098729 -178316513 + Tigger2 DNA MER2_type 169 375 -2343 2128 124 3 0 chr6 4098729 4099027 -178316215 + AluSq SINE Alu 1 299 -14 4123 131 29 50 chr6 4099027 4099424 -178315818 + Tigger2 DNA MER2_type 375 754 -1964 936 142 77 27 chr6 4099476 4099501 -178315741 + Tigger2 DNA MER2_type 2451 2473 -235 2067 131 7 0 chr6 4099501 4099799 -178315443 - AluSx SINE Alu -12 300 1 936 142 77 27 chr6 4099799 4099956 -178315286 + Tigger2 DNA MER2_type 2473 2642 -66 639 119 30 50 chr6 4100004 4100083 -178315159 + FLAM_A SINE Alu 29 107 -204 2160 106 13 7 chr6 4100083 4100384 -178314858 - AluSc SINE Alu -6 303 1 639 119 30 50 chr6 4100384 4100405 -178314837 + FLAM_A SINE Alu 107 127 -184 360 221 15 0 chr6 4100406 4100474 -178314768 + Tigger2 DNA MER2_type 2640 2708 -10 2173 99 3 0 chr6 4100487 4100810 -178314432 - AluSx SINE Alu 0 324 1 1671 193 74 37 chr6 4101022 4101452 -178313790 + MLT1C LTR MaLR 18 463 -4 490 288 70 27 chr6 4101736 4102128 -178313114 + L1ME4a LINE L1 5600 6016 -105 26 0 0 0 chr6 4102982 4103008 -178312234 + AT_rich Low_complexity Low_complexity 1 26 0 1446 138 9 9 chr6 4103012 4103236 -178312006 + AluJo SINE Alu 36 259 -53 2374 51 27 0 chr6 4103856 4104148 -178311094 - AluY SINE Alu -11 300 1 2308 84 0 0 chr6 4104279 4104564 -178310678 - AluY SINE Alu -26 285 1 373 272 234 0 chr6 4105300 4105484 -178309758 - L2 LINE L2 -549 2765 2539 2233 112 3 13 chr6 4105588 4105902 -178309340 - AluSx SINE Alu -1 311 1 2004 156 130 16 chr6 4106362 4106746 -178308496 + MSTA LTR MaLR 1 428 0 204 302 0 38 chr6 4106938 4106991 -178308251 + L2 LINE L2 3163 3213 -59 471 252 25 0 chr6 4107095 4107214 -178308028 - MLT1H LTR MaLR -425 124 3 2499 143 16 9 chr6 4107463 4107888 -178307354 + L1MA3 LINE L1 5600 6027 -278 2607 127 8 3 chr6 4107890 4108276 -178306966 + L1MA5 LINE L1 5903 6290 -10 2394 97 0 0 chr6 4109249 4109560 -178305682 - AluSq SINE Alu -2 311 1 346 127 0 0 chr6 4109567 4109622 -178305620 - Alu SINE Alu -1 299 245 3763 211 101 51 chr6 4109958 4110330 -178304912 - L1M LINE L1 -773 5393 5041 2419 78 0 0 chr6 4110330 4110625 -178304617 + AluY SINE Alu 1 295 -16 3763 211 101 51 chr6 4110625 4110776 -178304466 - L1M LINE L1 -1125 5041 4899 2267 115 7 0 chr6 4110776 4111071 -178304171 - AluSx SINE Alu -15 297 1 3763 211 101 51 chr6 4111071 4111511 -178303731 - L1M LINE L1 -1267 4899 4482 3161 164 130 23 chr6 4111511 4112217 -178303025 - LTR48 LTR ERV1 -3 784 3 3763 211 101 51 chr6 4112217 4112371 -178302871 - L1M LINE L1 -1684 4482 4337 2994 161 39 17 chr6 4112371 4112911 -178302331 - L1MB1 LINE L1 -1 6167 5616 3763 211 101 51 chr6 4112911 4113283 -178301959 - L1M LINE L1 -1829 4337 3846 2779 127 83 22 chr6 4113293 4113798 -178301444 - L1MB4 LINE L1 -3 6177 5642 310 137 78 0 chr6 4113800 4113851 -178301391 + MSTD LTR MaLR 1 55 -373 1505 184 92 30 chr6 4115697 4116033 -178299209 + MSTD LTR MaLR 40 396 0 257 87 0 87 chr6 4116033 4116079 -178299163 - L1MB4 LINE L1 -539 5644 5603 * 5567 219 97 19 chr6 4116067 4118657 -178296585 - L1M4 LINE L1 -1462 4920 924 2001 142 3 7 chr6 4118657 4118960 -178296282 - AluSx SINE Alu -10 302 1 5567 219 97 19 chr6 4118960 4119143 -178296099 - L1M4 LINE L1 -5458 924 757 349 303 67 26 chr6 4119774 4120014 -178295228 - L1MDb LINE L1 -5484 586 323 294 104 42 0 chr6 4120145 4120193 -178295049 + MADE1 DNA Mariner 1 50 -30 345 331 33 11 chr6 4120240 4120424 -178294818 - L1MDb LINE L1 -5882 188 1 306 311 34 17 chr6 4120424 4120543 -178294699 + MIR SINE MIR 47 167 -95 2234 103 10 0 chr6 4121749 4122041 -178293201 + AluSx SINE Alu 1 295 -17 2145 114 0 10 chr6 4122123 4122422 -178292820 - AluSx SINE Alu -16 296 1 316 250 16 12 chr6 4122462 4122588 -178292654 - MER5A DNA MER1_type 0 189 10 2191 116 0 3 chr6 4123716 4124010 -178291232 - AluSx SINE Alu -19 293 1 2114 123 0 7 chr6 4124998 4125299 -178289943 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 4125347 4125372 -178289870 + AT_rich Low_complexity Low_complexity 1 25 0 2413 216 46 110 chr6 4125411 4125848 -178289394 - L1ME2 LINE L1 -49 6115 5651 393 100 0 57 chr6 4125848 4125873 -178289369 + L1MA9 LINE L1 6247 6272 -40 1928 186 20 12 chr6 4125873 4126123 -178289119 - MER7A DNA MER2_type -2693 345 92 2107 108 38 0 chr6 4126123 4126410 -178288832 + AluSx SINE Alu 1 298 -14 1928 186 20 12 chr6 4126410 4126503 -178288739 - MER7A DNA MER2_type -2946 92 1 393 100 0 57 chr6 4126503 4126547 -178288695 + L1MA9 LINE L1 6272 6312 0 2413 216 46 110 chr6 4126547 4127106 -178288136 - L1ME2 LINE L1 -513 5651 5176 374 219 44 11 chr6 4127773 4127888 -178287354 + MIR SINE MIR 19 146 -63 2340 105 0 0 chr6 4127895 4128199 -178287043 - AluSx SINE Alu -8 304 1 233 150 0 0 chr6 4128239 4128279 -178286963 - Alu SINE Alu -8 125 86 1444 119 0 0 chr6 4128281 4128474 -178286768 - AluSq SINE Alu -120 193 1 1950 112 0 18 chr6 4128838 4129114 -178286128 - AluSx SINE Alu 0 312 42 183 125 83 0 chr6 4129216 4129288 -178285954 + (TA)n Simple_repeat Simple_repeat 2 79 0 1930 123 27 17 chr6 4129363 4129655 -178285587 + AluSx SINE Alu 1 295 -17 432 239 22 46 chr6 4130189 4130408 -178284834 + L1ME4a LINE L1 5709 6121 0 334 223 87 19 chr6 4130448 4130551 -178284691 + MIR3 SINE MIR 85 194 -14 659 310 64 74 chr6 4131943 4132481 -178282761 - L2 LINE L2 -2 3270 2733 1738 251 41 21 chr6 4132492 4133007 -178282235 - L1ME2 LINE L1 -8 6156 5632 2006 116 0 0 chr6 4133083 4133350 -178281892 - AluSg SINE Alu -2 308 42 182 292 31 131 chr6 4133677 4133807 -178281435 - L2 LINE L2 -1 3271 3155 1981 164 33 9 chr6 4134247 4134583 -178280659 - MER2 DNA MER2_type 0 344 1 249 108 0 0 chr6 4134768 4134805 -178280437 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 1982 132 17 3 chr6 4134805 4135092 -178280150 - AluSx SINE Alu -21 291 1 266 322 203 0 chr6 4135096 4135273 -178279969 + MIR SINE MIR 50 262 0 25 0 0 0 chr6 4137190 4137215 -178278027 + AT_rich Low_complexity Low_complexity 1 25 0 2236 135 0 0 chr6 4137253 4137565 -178277677 + AluSx SINE Alu 1 312 0 1039 258 31 28 chr6 4137731 4138053 -178277189 - MER77 LTR ERV1 -6 599 277 528 248 106 47 chr6 4138313 4138443 -178276799 - L1MC5 LINE L1 -31 7930 7809 2178 117 7 0 chr6 4138443 4138742 -178276500 - AluSx SINE Alu -11 301 1 528 248 106 47 chr6 4138742 4139015 -178276227 - L1MC5 LINE L1 -152 7809 7503 441 263 80 144 chr6 4141151 4141900 -178273342 - L1M2 LINE L1 -5489 1360 660 228 67 0 0 chr6 4142182 4142212 -178273030 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 222 237 0 66 chr6 4142410 4142486 -178272756 - MIR SINE MIR -129 133 63 2082 113 14 3 chr6 4142596 4142889 -178272353 - AluSq SINE Alu -17 296 1 857 174 73 18 chr6 4143200 4143418 -178271824 - LTR37B LTR ERV1 -42 426 197 325 297 44 100 chr6 4144273 4144791 -178270451 + L2 LINE L2 2390 2878 -436 26 0 0 0 chr6 4145811 4145837 -178269405 + AT_rich Low_complexity Low_complexity 1 26 0 2613 201 64 47 chr6 4146237 4146312 -178268930 - MER82 DNA MER2_type -1 652 580 1801 123 0 87 chr6 4146312 4146652 -178268590 - AluSx SINE Alu 0 313 1 2613 201 64 47 chr6 4146652 4147216 -178268026 - MER82 DNA MER2_type -73 580 1 954 273 67 4 chr6 4147226 4147479 -178267763 - LTR16C LTR ERVL 0 491 223 2139 121 3 7 chr6 4147491 4147797 -178267445 - AluY SINE Alu -6 305 1 536 213 89 30 chr6 4147798 4147967 -178267275 - L1ME LINE L1 -3292 2788 2610 3072 229 71 70 chr6 4147982 4148566 -178266676 - L1ME LINE L1 -3549 2531 1949 207 0 0 0 chr6 4148566 4148589 -178266653 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3072 229 71 70 chr6 4148589 4148606 -178266636 - L1ME LINE L1 -4131 1949 1934 2247 114 114 75 chr6 4148606 4148648 -178266594 - MSTA LTR MaLR 0 428 389 1566 154 24 8 chr6 4148648 4148901 -178266341 + AluJb SINE Alu 23 279 -33 221 0 0 33 chr6 4148901 4148931 -178266311 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2247 114 114 75 chr6 4148931 4149299 -178265943 - MSTA LTR MaLR -38 390 1 3072 229 71 70 chr6 4149299 4150490 -178264752 - L1ME LINE L1 -4146 1934 742 2402 150 23 30 chr6 4151127 4151560 -178263682 - MSTB1 LTR MaLR 0 432 3 524 323 31 16 chr6 4152065 4152257 -178262985 - L2 LINE L2 -1 3312 3118 184 341 181 4 chr6 4152258 4152347 -178262895 - L2 LINE L2 -495 2819 2747 2496 205 58 5 chr6 4152347 4152795 -178262447 - MER70A LTR ERVL 0 472 1 184 341 181 4 chr6 4152795 4152931 -178262311 - L2 LINE L2 -567 2747 2554 234 281 114 24 chr6 4153116 4153326 -178261916 - L1M4 LINE L1 -2106 4040 3812 * 2525 166 53 0 chr6 4153311 4153487 -178261755 - L1MB3 LINE L1 -210 5973 5808 249 83 0 0 chr6 4153487 4153523 -178261719 + (TA)n Simple_repeat Simple_repeat 1 36 0 2525 166 53 0 chr6 4153523 4153797 -178261445 - L1MB3 LINE L1 -375 5808 5499 2189 116 0 0 chr6 4153803 4154104 -178261138 - AluY SINE Alu -9 302 2 3314 98 7 7 chr6 4154130 4154580 -178260662 - L1MA2 LINE L1 0 6304 5855 10792 175 52 14 chr6 4154580 4156768 -178258474 - L1MB3 LINE L1 -1282 4864 2593 1270 116 0 0 chr6 4156770 4156942 -178258300 - AluSq SINE Alu 0 313 142 233 171 0 0 chr6 4157074 4157115 -178258127 - HAL1 LINE L1 -109 2398 2358 3689 226 122 44 chr6 4157237 4158804 -178256438 - L1MDb LINE L1 -3979 2427 783 279 0 0 0 chr6 4159005 4159036 -178256206 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 222 128 0 0 chr6 4159182 4159221 -178256021 + (GA)n Simple_repeat Simple_repeat 1 39 0 375 302 17 26 chr6 4160083 4160199 -178255043 - MIR3 SINE MIR -9 199 85 356 250 190 9 chr6 4160729 4160845 -178254397 - L2 LINE L2 -2 3270 3134 273 252 39 87 chr6 4161095 4161198 -178254044 - L3 LINE CR1 -12 1565 1468 221 302 94 0 chr6 4162263 4162359 -178252883 + L2 LINE L2 3161 3265 -7 1890 191 26 63 chr6 4162726 4163156 -178252086 - MLT2D LTR ERVL 0 414 1 243 290 250 0 chr6 4163922 4164022 -178251220 + L2 LINE L2 3148 3272 0 2392 65 0 3 chr6 4164127 4164418 -178250824 + AluY SINE Alu 3 292 -19 217 339 45 18 chr6 4164480 4164592 -178250650 + L2 LINE L2 2643 2757 -557 2060 132 134 11 chr6 4165714 4166094 -178249148 + MSTA LTR MaLR 1 427 -1 245 364 98 8 chr6 4166158 4166422 -178248820 - L2 LINE L2 -9 3263 2976 1792 154 57 0 chr6 4166939 4167218 -178248024 - AluSg SINE Alu -14 296 2 1066 214 81 45 chr6 4167815 4168147 -178247095 + MER2 DNA MER2_type 1 344 0 939 210 16 0 chr6 4171376 4171562 -178243680 + MER2 DNA MER2_type 2 190 -155 2097 132 3 0 chr6 4171565 4171868 -178243374 - AluSq SINE Alu -9 304 1 324 224 0 15 chr6 4171892 4171959 -178243283 + MER2 DNA MER2_type 267 332 -13 1247 178 18 4 chr6 4172118 4172449 -178242793 - MER74A LTR ERVL -124 434 19 2095 85 0 0 chr6 4172449 4172708 -178242534 + AluSc SINE Alu 1 259 -50 191 61 30 0 chr6 4172718 4172751 -178242491 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 259 86 0 0 chr6 4172756 4172791 -178242451 - MER74C LTR ERVL -424 36 2 2552 241 58 24 chr6 4172794 4173002 -178242240 - L1ME3A LINE L1 -21 6149 5950 2006 146 7 0 chr6 4173002 4173304 -178241938 - AluSx SINE Alu -8 304 1 2552 241 58 24 chr6 4173304 4174519 -178240723 - L1ME3A LINE L1 -220 5950 4667 1257 215 15 4 chr6 4175640 4175926 -178239316 + AluJb SINE Alu 16 304 0 228 208 26 26 chr6 4176108 4176185 -178239057 - MER117 DNA MER1_type -5 192 116 326 277 28 35 chr6 4176255 4176396 -178238846 + MIR SINE MIR 8 147 -115 2077 210 33 9 chr6 4176396 4176849 -178238393 + MER101 LTR ERV1 11 474 0 2352 98 0 0 chr6 4177011 4177308 -178237934 - AluSq SINE Alu -10 303 7 207 0 0 0 chr6 4178518 4178541 -178236701 + (T)n Simple_repeat Simple_repeat 1 23 0 379 169 0 28 chr6 4179204 4179275 -178235967 + MER89-int LTR ERV1 2577 2645 -3686 1745 182 41 64 chr6 4179358 4179945 -178235297 + MER89-int LTR ERV1 1066 3012 -3319 705 213 70 39 chr6 4179869 4180099 -178235143 + LTR57-int LTR ERVL 1236 1472 -3871 * 2304 89 3 0 chr6 4180099 4180392 -178234850 + AluSg SINE Alu 1 294 -16 2402 97 0 0 chr6 4180533 4180841 -178234401 + AluSx SINE Alu 1 308 -4 883 169 15 36 chr6 4180891 4181086 -178234156 + MER89-int LTR ERV1 3540 3730 -2868 723 142 172 64 chr6 4181165 4181369 -178233873 + MER89-int LTR ERV1 3730 3955 -2643 865 114 57 0 chr6 4181370 4181493 -178233749 + FRAM SINE Alu 32 161 -15 2265 108 0 37 chr6 4181495 4181820 -178233422 + AluSq SINE Alu 1 313 0 2307 175 38 69 chr6 4181864 4182469 -178232773 + MER89-int LTR ERV1 4024 4609 -1722 265 277 15 46 chr6 4182455 4182585 -178232657 + MER89-int LTR ERV1 2727 2852 -1795 * 270 247 67 67 chr6 4183985 4184074 -178231168 + MER89-int LTR ERV1 6305 6393 -408 2414 150 32 47 chr6 4184641 4185114 -178230128 + MER101 LTR ERV1 9 474 0 1700 197 61 72 chr6 4185484 4185734 -178229508 + MLT1C LTR MaLR 1 245 -222 891 128 0 0 chr6 4185734 4185898 -178229344 + (GA)n Simple_repeat Simple_repeat 2 165 0 1700 197 61 72 chr6 4185898 4186119 -178229123 + MLT1C LTR MaLR 245 467 0 933 187 12 88 chr6 4186324 4186575 -178228667 - MER101 LTR ERV1 -111 363 132 370 184 167 18 chr6 4186998 4187112 -178228130 - L1ME4a LINE L1 -27 6374 6244 1459 265 121 24 chr6 4187140 4187852 -178227390 - HAL1 LINE L1 0 2507 1727 1364 258 94 28 chr6 4187849 4188591 -178226651 - L1ME4a LINE L1 -452 5998 5205 * 423 246 42 122 chr6 4188679 4189065 -178226177 - L1ME4a LINE L1 -3463 2963 2609 1570 173 43 34 chr6 4189445 4189768 -178225474 + MLT1B LTR MaLR 1 326 -64 581 98 0 80 chr6 4189767 4189879 -178225363 + Tigger4(Zombi) DNA MER2_type 2629 2731 0 * 300 262 94 67 chr6 4190210 4190575 -178224667 - L1MDa LINE L1 -4813 1613 1232 264 285 102 0 chr6 4190569 4190706 -178224536 - L1MDa LINE L1 -5069 1347 1197 * 243 211 53 123 chr6 4190820 4190934 -178224308 - MLT1H LTR MaLR -13 536 431 5121 83 25 3 chr6 4191053 4191729 -178223513 - LTR8 LTR ERV1 0 691 1 313 258 78 31 chr6 4191753 4191881 -178223361 - MLT1H LTR MaLR -365 184 51 25 0 0 0 chr6 4191930 4191955 -178223287 + AT_rich Low_complexity Low_complexity 1 25 0 873 237 118 0 chr6 4192097 4192325 -178222917 - MLT1E1 LTR MaLR -2 652 398 547 265 33 17 chr6 4192653 4192834 -178222408 - MIR SINE MIR 0 262 79 884 166 61 55 chr6 4192836 4193017 -178222225 + LTR54 LTR ERV1 2 183 -327 813 230 19 5 chr6 4193040 4193249 -178221993 + LTR54 LTR ERV1 299 510 0 2109 100 19 59 chr6 4193947 4194267 -178220975 - AluSx SINE Alu -5 307 1 184 308 39 51 chr6 4194283 4194439 -178220803 + MIR SINE MIR 1 154 -108 27 81 0 0 chr6 4194479 4194541 -178220701 + AT_rich Low_complexity Low_complexity 1 62 0 4147 109 148 110 chr6 4196158 4197523 -178217719 - pTR5 LTR ERV1 0 2438 742 231 173 77 0 chr6 4199145 4199197 -178216045 - L1 LINE L1 -3715 2431 2376 8012 14 0 0 chr6 4199203 4200271 -178214971 - L1PA2 LINE L1 -4 6151 5084 1859 175 34 0 chr6 4200557 4200854 -178214388 + AluSx SINE Alu 1 307 -5 1467 143 3 73 chr6 4200854 4201140 -178214102 - MER2 DNA MER2_type -79 266 1 8389 109 41 6 chr6 4201514 4202770 -178212472 + HSMAR2 DNA Mariner 2 1301 -1 22 0 0 0 chr6 4202895 4202917 -178212325 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 73 32 chr6 4202962 4203086 -178212156 - L1MC/D LINE L1 -2159 5883 5755 680 272 68 33 chr6 4203201 4203661 -178211581 - L1MC/D LINE L1 -448 5722 5255 598 120 16 72 chr6 4203744 4203798 -178211444 - L1MB2 LINE L1 -5 6166 6111 1913 84 4 4 chr6 4203798 4204073 -178211169 - L1MA2 LINE L1 0 6304 6030 598 120 16 72 chr6 4204073 4204143 -178211099 - L1MB2 LINE L1 -60 6111 6049 44844 38 4 1 chr6 4204191 4210312 -178204930 - L1PA4 LINE L1 0 6155 13 594 256 42 30 chr6 4210315 4210577 -178204665 - L1MC/D LINE L1 -999 5147 4883 663 299 119 3 chr6 4210650 4210944 -178204298 + LTR16C LTR ERVL 71 398 -93 1633 189 4 0 chr6 4211014 4211278 -178203964 - AluJo SINE Alu -47 265 1 614 164 8 0 chr6 4212766 4212888 -178202354 + CT-rich Low_complexity Low_complexity 4 126 0 1560 170 56 35 chr6 4212975 4213263 -178201979 - AluJo SINE Alu -18 294 1 198 265 20 0 chr6 4214253 4214302 -178200940 + L2 LINE L2 3247 3296 -17 1972 175 153 0 chr6 4214918 4215318 -178199924 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr6 4215340 4215362 -178199880 + AT_rich Low_complexity Low_complexity 1 22 0 42 36 0 0 chr6 4215485 4215541 -178199701 + AT_rich Low_complexity Low_complexity 1 56 0 197 308 38 60 chr6 4216030 4216163 -178199079 + L2 LINE L2 3141 3270 -2 1492 147 88 26 chr6 4217409 4217682 -178197560 + AluJo SINE Alu 1 290 -22 740 249 23 17 chr6 4217872 4218049 -178197193 - MER5B DNA MER1_type 0 178 1 345 100 0 0 chr6 4218097 4218147 -178197095 + (CA)n Simple_repeat Simple_repeat 1 50 0 2464 137 16 29 chr6 4218774 4219154 -178196088 - THE1C LTR MaLR 0 375 1 10878 107 31 45 chr6 4219156 4220757 -178194485 - THE1C-int LTR MaLR -2 1578 1 2453 120 29 27 chr6 4220757 4221131 -178194111 - THE1C LTR MaLR 0 375 1 1260 193 90 43 chr6 4221221 4221522 -178193720 + MSTB1 LTR MaLR 1 315 -117 25 0 0 0 chr6 4222014 4222039 -178193203 + AT_rich Low_complexity Low_complexity 1 25 0 3319 159 3 52 chr6 4222788 4223234 -178192008 + MER73 LTR ERVL 15 422 -222 2312 89 3 29 chr6 4223234 4223548 -178191694 - AluY SINE Alu -5 306 1 3319 159 3 52 chr6 4223548 4223735 -178191507 + MER73 LTR ERVL 422 617 -27 1325 149 14 0 chr6 4223736 4223944 -178191298 - THE1C LTR MaLR 0 375 165 330 252 43 0 chr6 4224123 4224238 -178191004 - THE1C LTR MaLR -246 129 10 535 216 7 14 chr6 4224252 4224391 -178190851 - THE1C-int LTR MaLR -4 1576 1439 * 7247 119 34 41 chr6 4224386 4225661 -178189581 - THE1C-int LTR MaLR -367 1213 3 2810 102 11 3 chr6 4225663 4226035 -178189207 - THE1C LTR MaLR 0 375 1 350 301 175 35 chr6 4226341 4226570 -178188672 - MIR SINE MIR 0 262 2 678 240 17 28 chr6 4226579 4226758 -178188484 + MER5B DNA MER1_type 1 177 -1 282 164 0 0 chr6 4226794 4226849 -178188393 + (CA)n Simple_repeat Simple_repeat 2 56 0 520 321 75 11 chr6 4227179 4227459 -178187783 + MER102a DNA MER1_type 1 298 -32 2393 127 36 30 chr6 4228051 4228413 -178186829 + THE1B LTR MaLR 1 364 0 12321 90 13 10 chr6 4228413 4229989 -178185253 + THE1B-int LTR MaLR 1 1580 0 1069 169 55 32 chr6 4229991 4230210 -178185032 + THE1B LTR MaLR 3 226 -149 494 249 15 88 chr6 4230221 4230426 -178184816 + LTR4 LTR ERV1 10 199 -397 394 267 48 30 chr6 4230619 4230784 -178184458 + LTR4 LTR ERV1 318 485 -111 8681 163 27 27 chr6 4230795 4232405 -178182837 + L1P LINE L1 11 1620 -4526 1661 155 79 65 chr6 4232420 4232693 -178182549 + HERVL74 LTR ERVL 1243 1525 -4160 1908 128 0 21 chr6 4232693 4233003 -178182239 + AluSx SINE Alu 1 304 0 1661 155 79 65 chr6 4233003 4233095 -178182147 + HERVL74 LTR ERVL 1525 1614 -4071 1742 159 101 29 chr6 4233098 4233186 -178182056 + L1MA4 LINE L1 5642 5722 -578 1527 182 0 0 chr6 4233186 4233428 -178181814 + AluSx SINE Alu 1 242 -70 1742 159 101 29 chr6 4233428 4233459 -178181783 + L1MA4 LINE L1 5722 5749 -551 432 0 0 0 chr6 4233459 4233507 -178181735 + (CA)n Simple_repeat Simple_repeat 2 49 0 1742 159 101 29 chr6 4233507 4233764 -178181478 + L1MA4 LINE L1 5749 6046 -254 953 143 0 0 chr6 4233767 4233900 -178181342 + FLAM_C SINE Alu 1 133 -10 787 309 77 3 chr6 4233924 4234290 -178180952 + L1ME LINE L1 4910 5302 -844 453 53 0 0 chr6 4234290 4234347 -178180895 - U2 snRNA snRNA -125 63 7 1731 41 0 0 chr6 4234347 4234543 -178180699 + L1PA5 LINE L1 5959 6154 0 408 230 29 7 chr6 4234545 4234703 -178180539 + L1ME LINE L1 5328 5486 -678 18806 127 20 56 chr6 4234716 4238086 -178177156 + L1P LINE L1 12 3260 -2886 19229 78 18 5 chr6 4238262 4241502 -178173740 + L1PA6 LINE L1 2878 6153 -1 350 165 87 58 chr6 4241502 4241605 -178173637 + LTR4 LTR ERV1 477 582 -14 * 826 175 75 12 chr6 4241600 4241760 -178173482 + THE1B LTR MaLR 193 362 -2 225 204 0 0 chr6 4241997 4242041 -178173201 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 911 217 44 113 chr6 4242138 4242641 -178172601 + LTR37B LTR ERV1 1 468 0 1565 231 50 29 chr6 4242649 4243104 -178172138 - L1MC4 LINE L1 -96 7946 7482 715 240 0 0 chr6 4243591 4243720 -178171522 + FLAM_A SINE Alu 1 129 -4 2869 259 97 16 chr6 4244749 4245841 -178169401 - L1M4 LINE L1 -1824 4322 3143 1301 190 62 0 chr6 4245879 4246137 -178169105 - AluJo SINE Alu -38 274 1 454 237 0 0 chr6 4246206 4246345 -178168897 + L1M4 LINE L1 3047 3185 -2961 1099 281 101 14 chr6 4246824 4246932 -178168310 + HERV16 LTR ERVL 871 968 -4028 1919 60 0 9 chr6 4246932 4247164 -178168078 - AluY SINE Alu -14 297 68 1099 281 101 14 chr6 4247164 4247479 -178167763 + HERV16 LTR ERVL 968 1331 -3665 285 29 0 0 chr6 4247755 4247789 -178167453 + (TG)n Simple_repeat Simple_repeat 2 35 0 2533 108 57 5 chr6 4247892 4248262 -178166980 - L1PA11 LINE L1 -1 6173 5785 2255 125 3 0 chr6 4248268 4248579 -178166663 - AluSx SINE Alu 0 312 1 25 0 0 0 chr6 4249564 4249589 -178165653 + AT_rich Low_complexity Low_complexity 1 25 0 2852 109 144 2 chr6 4249747 4250213 -178165029 - THE1C-int LTR MaLR -1045 535 4 1974 150 64 25 chr6 4250216 4250577 -178164665 - THE1C LTR MaLR 0 375 1 4443 195 19 20 chr6 4250607 4250932 -178164310 - L1MA9 LINE L1 -161 6151 5827 2241 103 0 16 chr6 4250932 4251242 -178164000 - AluY SINE Alu -6 305 1 4443 195 19 20 chr6 4251242 4251275 -178163967 - L1MA9 LINE L1 -485 5827 5795 348 24 0 0 chr6 4251275 4251316 -178163926 + (CA)n Simple_repeat Simple_repeat 2 42 0 4443 195 19 20 chr6 4251316 4251761 -178163481 - L1MA9 LINE L1 -517 5795 5351 2344 101 0 0 chr6 4251761 4252058 -178163184 - AluSx SINE Alu -15 297 1 2421 74 0 3 chr6 4252063 4252362 -178162880 - AluY SINE Alu -13 298 1 4443 195 19 20 chr6 4252362 4252945 -178162297 - L1MA9 LINE L1 -965 5347 4765 930 221 67 0 chr6 4252947 4253142 -178162100 - AluJb SINE Alu -23 289 82 204 327 47 4 chr6 4303408 4303502 -178111740 + MIR SINE MIR 3 106 -102 574 274 177 23 chr6 4303513 4303903 -178111339 + MLT1J2 LTR MaLR 1 450 0 2473 57 0 0 chr6 4304017 4304315 -178110927 + AluY SINE Alu 2 299 -12 356 259 144 14 chr6 4304644 4304783 -178110459 - L1ME4a LINE L1 -1 6120 5964 609 235 86 29 chr6 4304888 4305131 -178110111 - L1ME4a LINE L1 -177 5944 5688 2599 194 20 20 chr6 4305379 4305885 -178109357 + MLT2B2 LTR ERVL 2 507 -8 694 194 19 0 chr6 4306024 4306184 -178109058 + CT-rich Low_complexity Low_complexity 4 166 0 4471 184 40 25 chr6 4306202 4307817 -178107425 - L1MB7 LINE L1 -16 6168 4530 2172 118 0 0 chr6 4308084 4308389 -178106853 + AluSq SINE Alu 1 305 -8 196 284 28 110 chr6 4308510 4308619 -178106623 + MIR SINE MIR 36 135 -73 186 303 67 0 chr6 4310379 4310468 -178104774 - L2 LINE L2 -57 3215 3121 192 366 113 7 chr6 4310549 4310691 -178104551 - L2 LINE L2 -169 3103 2947 204 186 17 85 chr6 4310920 4310979 -178104263 - L2 LINE L2 -488 2826 2772 310 290 86 38 chr6 4311080 4311266 -178103976 + MER102b DNA MER1_type 126 320 -21 550 307 199 28 chr6 4312431 4312454 -178102788 - L2 LINE L2 0 3272 3254 1504 256 103 2 chr6 4312454 4312900 -178102342 - LTR16C LTR ERVL 0 491 1 550 307 199 28 chr6 4312900 4313202 -178102040 - L2 LINE L2 -18 3254 2891 2335 68 0 0 chr6 4313203 4313497 -178101745 + AluY SINE Alu 1 294 -17 1816 167 7 0 chr6 4313890 4314196 -178101046 - Tigger3(Golem) DNA MER2_type -1 3028 2721 385 231 77 0 chr6 4314188 4314266 -178100976 - Tigger3(Golem) DNA MER2_type -2935 94 11 * 781 220 146 14 chr6 4314294 4314564 -178100678 + MLT1G1 LTR MaLR 1 260 -330 437 171 40 51 chr6 4314624 4314800 -178100442 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 213 285 149 22 chr6 4316182 4316321 -178098921 - L2 LINE L2 -174 3098 2941 629 269 83 25 chr6 4316444 4316681 -178098561 - MIR SINE MIR 0 262 14 332 297 51 8 chr6 4316721 4316839 -178098403 + MER5A DNA MER1_type 43 165 -24 492 353 22 11 chr6 4316930 4317114 -178098128 + MIR3 SINE MIR 16 201 -7 2586 163 39 34 chr6 4317179 4317217 -178098025 - MLT1C LTR MaLR 0 467 431 2045 95 0 79 chr6 4317217 4317534 -178097708 + AluSq SINE Alu 1 292 -21 2586 163 39 34 chr6 4317534 4317960 -178097282 - MLT1C LTR MaLR -36 431 1 7109 141 47 23 chr6 4318038 4318688 -178096554 + Tigger3b DNA MER2_type 1 695 -2333 1778 164 6 41 chr6 4318688 4318866 -178096376 - AluJo SINE Alu -6 306 142 2022 145 0 7 chr6 4318866 4319162 -178096080 - AluSx SINE Alu -18 294 1 1778 164 6 41 chr6 4319162 4319300 -178095942 - AluJo SINE Alu -170 142 1 7109 141 47 23 chr6 4319300 4319851 -178095391 + Tigger3b DNA MER2_type 695 1231 0 469 247 33 54 chr6 4320129 4320352 -178094890 + L1ME4a LINE L1 5559 5718 -403 996 227 145 93 chr6 4320397 4321142 -178094100 - MER20B DNA MER1_type 0 784 1 253 258 81 32 chr6 4321348 4321472 -178093770 + L1ME4a LINE L1 5992 6121 0 1658 160 7 21 chr6 4321494 4321815 -178093427 + AluSx SINE Alu 1 317 0 1160 193 33 0 chr6 4321830 4322042 -178093200 - MER20 DNA MER1_type 0 219 1 467 279 123 18 chr6 4322044 4322263 -178092979 + MIR SINE MIR 9 250 -12 827 217 16 27 chr6 4323975 4324159 -178091083 + MER5A DNA MER1_type 1 182 -7 1365 195 92 23 chr6 4324176 4324479 -178090763 - MER2 DNA MER2_type 0 345 22 313 370 92 40 chr6 4325058 4325285 -178089957 - L2 LINE L2 -4 3268 3030 4342 133 8 39 chr6 4325678 4326401 -178088841 + MER50 LTR ERV1 34 734 0 206 333 63 0 chr6 4327468 4327531 -178087711 + MIR SINE MIR 23 89 -173 2319 184 29 86 chr6 4327735 4328317 -178086925 + MLT2B3 LTR ERVL 6 554 0 189 291 214 0 chr6 4328632 4328735 -178086507 + L3 LINE CR1 1105 1229 -348 21 0 0 0 chr6 4329678 4329699 -178085543 + AT_rich Low_complexity Low_complexity 1 21 0 2132 122 0 0 chr6 4331113 4331401 -178083841 - AluSg1 SINE Alu -21 288 1 215 303 40 0 chr6 4331454 4331530 -178083712 - MER5A DNA MER1_type -110 79 1 290 297 318 8 chr6 4332331 4332570 -178082672 - L2 LINE L2 -1 3271 2959 27 0 0 0 chr6 4333041 4333068 -178082174 + AT_rich Low_complexity Low_complexity 1 27 0 1751 91 0 28 chr6 4333415 4333668 -178081574 - L1PA14 LINE L1 -530 5631 5386 3431 104 34 8 chr6 4333669 4334168 -178081074 + L1PA14 LINE L1 5650 6161 0 1015 253 48 83 chr6 4334226 4334640 -178080602 + L2 LINE L2 2766 3152 -161 3984 114 22 5 chr6 4334640 4335230 -178080012 - L1MC1 LINE L1 -11 6322 5723 1015 253 48 83 chr6 4335230 4335387 -178079855 + L2 LINE L2 3152 3313 0 414 322 72 11 chr6 4335672 4335937 -178079305 + L1M2 LINE L1 5286 5566 -601 395 298 113 31 chr6 4336179 4336471 -178078771 - MER97c DNA MER1_type? -1 1089 774 738 176 0 40 chr6 4336688 4336836 -178078406 - MER97a DNA MER1_type? -270 624 483 2381 94 7 0 chr6 4336860 4337168 -178078074 - AluSg SINE Alu 0 310 1 1606 208 61 21 chr6 4337168 4337547 -178077695 - MER97c DNA MER1_type? -689 401 8 387 202 34 0 chr6 4337640 4337729 -178077513 - L1M4 LINE L1 -1210 5118 5027 5814 213 37 49 chr6 4337729 4339464 -178075778 + L1 LINE L1 1160 2871 -3917 2709 168 14 0 chr6 4339464 4339976 -178075266 + L1 LINE L1 4960 5478 -1310 7461 182 33 15 chr6 4339992 4341932 -178073310 - L1M4 LINE L1 -4065 1263 3 892 219 214 21 chr6 4341933 4342321 -178072921 - L1M4 LINE L1 -1371 4957 4495 616 232 112 21 chr6 4342844 4343129 -178072113 + L1ME4a LINE L1 5808 6118 -3 767 191 40 12 chr6 4344468 4344641 -178070601 + MER5B DNA MER1_type 1 178 0 400 195 0 37 chr6 4345800 4345882 -178069360 + MER21B LTR ERV1 12 90 -773 2739 228 55 50 chr6 4345904 4346723 -178068519 + MER21B LTR ERV1 19 841 -22 363 248 139 0 chr6 4347351 4347452 -178067790 + MIR SINE MIR 73 187 -75 368 273 169 23 chr6 4347526 4347698 -178067544 - MIR SINE MIR -43 219 23 2017 106 7 0 chr6 4347746 4348021 -178067221 - AluSx SINE Alu 0 312 36 485 263 79 7 chr6 4350716 4350868 -178064374 + MIR3 SINE MIR 24 186 -22 191 326 153 33 chr6 4350998 4351240 -178064002 + L2 LINE L2 2704 2974 -340 2376 87 7 3 chr6 4352061 4352359 -178062883 + AluSq SINE Alu 1 299 -14 3724 210 71 28 chr6 4352367 4354119 -178061123 - L1ME1 LINE L1 -5 6230 4400 534 217 129 42 chr6 4354190 4354407 -178060835 + MER106A DNA MER1_type 1 236 0 1740 309 22 18 chr6 4354612 4355322 -178059920 - L1ME1 LINE L1 -5607 789 77 259 297 76 0 chr6 4355585 4355703 -178059539 + L1MEd LINE L1 6 132 -5987 451 281 16 8 chr6 4355782 4355910 -178059332 + L2 LINE L2 3185 3313 0 988 284 66 33 chr6 4356185 4356642 -178058600 + L1MEd LINE L1 459 930 -5189 338 339 109 16 chr6 4356655 4356847 -178058395 + HAL1 LINE L1 1560 1769 -738 43319 34 25 1 chr6 4356908 4362913 -178052329 - L1PA3 LINE L1 0 6155 2 324 274 110 40 chr6 4362997 4363351 -178051891 + L1M4 LINE L1 4132 4510 -1636 2555 270 148 31 chr6 4363359 4364544 -178050698 - L2 LINE L2 -701 2613 1291 314 347 57 6 chr6 4364545 4364721 -178050521 + L1M4 LINE L1 4961 5145 -1001 4856 152 73 42 chr6 4364746 4365597 -178049645 + LTR13 LTR ERVK 1 885 -69 2319 91 0 3 chr6 4365597 4365895 -178049347 - AluY SINE Alu -14 297 1 4856 152 73 42 chr6 4365895 4365968 -178049274 + LTR13 LTR ERVK 885 954 0 12697 122 39 6 chr6 4365973 4368259 -178046983 - Tigger4(Zombi) DNA MER2_type 0 2731 330 549 0 0 0 chr6 4368259 4368320 -178046922 + (CA)n Simple_repeat Simple_repeat 2 62 0 12697 122 39 6 chr6 4368320 4368661 -178046581 - Tigger4(Zombi) DNA MER2_type -2401 330 2 1812 312 120 18 chr6 4368676 4369665 -178045577 + L2 LINE L2 1812 2901 -413 427 300 91 36 chr6 4369706 4369926 -178045316 + L2 LINE L2 3014 3245 -68 2116 226 100 26 chr6 4370058 4371217 -178044025 + L1ME2 LINE L1 4853 6130 -34 271 297 0 11 chr6 4371457 4371548 -178043694 + GA-rich Low_complexity Low_complexity 3 92 0 185 178 22 0 chr6 4371582 4371627 -178043615 + GA-rich Low_complexity Low_complexity 1 46 0 308 347 82 33 chr6 4372227 4372472 -178042770 - L2 LINE L2 -10 3262 3006 500 324 24 34 chr6 4372692 4372899 -178042343 + MIR SINE MIR 36 240 -22 1229 255 86 14 chr6 4373676 4374111 -178041131 - MLT1F LTR MaLR -18 524 24 1187 120 0 0 chr6 4374396 4374586 -178040656 - AluSg/x SINE Alu 0 316 127 244 292 124 29 chr6 4374952 4375089 -178040153 - MIR SINE MIR -79 183 34 328 302 13 13 chr6 4375533 4375692 -178039550 + CT-rich Low_complexity Low_complexity 1 159 0 2346 100 0 10 chr6 4377053 4377364 -178037878 - AluY SINE Alu -3 308 1 639 282 29 28 chr6 4378201 4378566 -178036676 + LTR16B LTR ERVL 34 451 -13 278 263 185 24 chr6 4378605 4378810 -178036432 - L2 LINE L2 -529 2785 2548 368 259 70 49 chr6 4378897 4379040 -178036202 + MIR3 SINE MIR 20 165 -43 366 181 14 0 chr6 4379081 4379153 -178036089 - L1MB3 LINE L1 -23 6160 6088 2393 166 32 11 chr6 4379280 4379749 -178035493 - L1MB3 LINE L1 -93 6090 5612 200 152 0 0 chr6 4380068 4380101 -178035141 + MIR3 SINE MIR 167 199 -9 346 325 0 9 chr6 4381065 4381179 -178034063 + LTR16A LTR ERVL 25 137 -313 939 250 118 49 chr6 4381815 4382247 -178032995 + LTR16B LTR ERVL 1 462 -2 214 232 29 58 chr6 4382778 4382847 -178032395 + L2 LINE L2 3132 3198 -74 1971 144 44 0 chr6 4382916 4383214 -178032028 - AluSx SINE Alu -1 311 1 335 271 34 126 chr6 4383401 4383751 -178031491 - L2 LINE L2 -37 3235 2918 5803 107 38 5 chr6 4384053 4384412 -178030830 - L1PA15 LINE L1 -5 6160 5814 387 0 0 0 chr6 4384412 4384455 -178030787 + (TG)n Simple_repeat Simple_repeat 2 44 0 5803 107 38 5 chr6 4384455 4385019 -178030223 - L1PA15 LINE L1 -351 5814 5213 426 94 0 0 chr6 4385805 4385869 -178029373 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 3293 32 0 0 chr6 4386104 4386484 -178028758 + L1PA3 LINE L1 5775 6154 -1 403 232 13 73 chr6 4387599 4387750 -178027492 + MIR3 SINE MIR 10 151 -57 226 279 15 15 chr6 4387954 4388022 -178027220 - L2 LINE L2 0 3313 3246 2533 146 18 18 chr6 4389667 4389827 -178025415 - L1MB3 LINE L1 -2 6181 6022 1689 176 63 39 chr6 4389827 4390208 -178025034 - MLT1B LTR MaLR 0 390 1 2533 146 18 18 chr6 4390208 4390485 -178024757 - L1MB3 LINE L1 -160 6023 5744 249 333 23 0 chr6 4390531 4390618 -178024624 + L2 LINE L2 3184 3272 0 239 281 31 62 chr6 4390634 4390730 -178024512 - MIR SINE MIR -76 186 94 1073 189 19 0 chr6 4390982 4391194 -178024048 + MER20 DNA MER1_type 1 216 -3 513 260 73 50 chr6 4391767 4391986 -178023256 - MIR SINE MIR -14 248 25 1896 160 47 25 chr6 4392088 4392550 -178022692 - MLT2B1 LTR ERVL -1 514 1 814 217 84 57 chr6 4393076 4393408 -178021834 - LTR16A1 LTR ERVL 0 457 117 750 264 11 0 chr6 4396030 4396204 -178019038 - MER5A DNA MER1_type 0 189 14 337 273 102 8 chr6 4396311 4396439 -178018803 - MIR SINE MIR -69 193 54 261 259 71 0 chr6 4396432 4396517 -178018725 - MER5B DNA MER1_type -87 91 1 * 359 292 31 8 chr6 4396888 4397018 -178018224 - LTR33 LTR ERVL 0 521 389 435 255 64 64 chr6 4397051 4397134 -178018108 - LTR33 LTR ERVL -250 271 189 865 241 45 5 chr6 4397134 4397333 -178017909 + MER63A DNA MER1_type 4 210 0 435 255 64 64 chr6 4397333 4397453 -178017789 - LTR33 LTR ERVL -331 190 68 234 281 18 0 chr6 4397849 4397906 -178017336 - L2 LINE L2 -6 3266 3209 489 237 168 5 chr6 4397975 4398165 -178017077 - LTR33A LTR ERVL -5 518 298 271 242 216 20 chr6 4398223 4398376 -178016866 - LTR33A LTR ERVL -339 184 2 2750 163 25 48 chr6 4398548 4398614 -178016628 - MLT2B2 LTR ERVL -2 513 447 2075 111 7 14 chr6 4398614 4398933 -178016309 - AluSx SINE Alu 0 317 1 2750 163 25 48 chr6 4398933 4399387 -178015855 - MLT2B2 LTR ERVL -68 447 3 317 272 39 19 chr6 4399629 4399732 -178015510 - MIR SINE MIR -67 141 37 561 262 13 13 chr6 4400064 4400213 -178015029 + MER63A DNA MER1_type 60 208 -2 753 224 13 69 chr6 4400482 4400714 -178014528 + MIR SINE MIR 44 262 0 520 296 96 50 chr6 4400841 4401121 -178014121 - L3 LINE CR1 -14 1563 1271 189 172 0 0 chr6 4401421 4401450 -178013792 - L3 LINE CR1 -303 1274 1246 305 256 80 16 chr6 4402775 4402900 -178012342 + L2 LINE L2 2132 2264 -1050 1756 140 146 3 chr6 4402984 4403327 -178011915 + Ricksha DNA DNA 30 421 -2825 250 288 85 25 chr6 4403588 4403706 -178011536 + L2 LINE L2 2648 2772 -542 374 244 17 122 chr6 4403714 4403839 -178011403 - MIR SINE MIR -4 258 154 2408 102 0 7 chr6 4403839 4404144 -178011098 - AluSx SINE Alu -9 303 1 374 244 17 122 chr6 4404144 4404190 -178011052 - MIR SINE MIR -108 154 105 237 305 40 46 chr6 4404798 4404949 -178010293 + L2 LINE L2 2919 3068 -204 316 245 91 42 chr6 4405612 4405755 -178009487 + MIR SINE MIR 83 232 -30 218 203 31 62 chr6 4405729 4405793 -178009449 + L2 LINE L2 3252 3313 0 * 2087 123 17 17 chr6 4406091 4406391 -178008851 + AluSq SINE Alu 1 300 -13 266 264 47 28 chr6 4407172 4407278 -178007964 - L3 LINE CR1 -390 1187 1080 267 289 197 5 chr6 4408587 4408747 -178006495 - MIR SINE MIR -50 212 15 200 326 84 21 chr6 4408906 4409001 -178006241 - MIR3 SINE MIR -102 106 6 302 235 47 12 chr6 4409013 4409098 -178006144 - MIR SINE MIR -69 139 52 385 234 171 0 chr6 4410149 4410260 -178004982 - MER91C DNA MER1_type -10 130 1 1440 149 54 0 chr6 4411510 4411751 -178003491 + AluJo SINE Alu 48 301 -11 1723 213 57 31 chr6 4412036 4412481 -178002761 + LTR10B LTR ERV1 1 547 0 8575 243 53 71 chr6 4412481 4415717 -177999525 + HERVI LTR ERV1 1 3177 -4608 187 276 0 95 chr6 4415724 4415829 -177999413 - L3b LINE CR1 -283 1300 1206 9236 221 6 18 chr6 4415833 4417802 -177997440 + BaEV-int LTR ERV1 4419 6364 -285 696 333 56 0 chr6 4418408 4418639 -177996603 - MIR SINE MIR -5 257 14 245 252 37 37 chr6 4418667 4418774 -177996468 - L1ME4a LINE L1 -48 6073 5967 243 241 81 0 chr6 4418879 4418966 -177996276 - L1ME4a LINE L1 -319 5802 5709 503 209 73 72 chr6 4418970 4419203 -177996039 + MLT1H LTR MaLR 1 278 -271 259 176 189 0 chr6 4419342 4419416 -177995826 + MLT1G LTR MaLR 495 582 -8 237 287 96 37 chr6 4419725 4419861 -177995381 - L1ME4a LINE L1 -595 5526 5383 263 230 0 120 chr6 4419912 4420012 -177995230 - L1ME2 LINE L1 -138 6026 5939 1686 118 8 0 chr6 4420087 4420332 -177994910 - L1MA5A LINE L1 0 6297 6051 1360 150 0 5 chr6 4420833 4421046 -177994196 + AluSx SINE Alu 1 212 -100 365 121 0 0 chr6 4421047 4421105 -177994137 + AluYb8 SINE Alu 77 134 -174 2237 118 0 9 chr6 4421105 4421420 -177993822 + AluSq SINE Alu 1 312 -1 575 122 0 0 chr6 4421421 4421511 -177993731 - L1P LINE L1 -851 5295 5206 2799 46 3 6 chr6 4421511 4421834 -177993408 + L1PA8 LINE L1 5838 6165 -7 234 227 0 0 chr6 4422003 4422047 -177993195 + L2 LINE L2 3219 3262 -10 557 266 117 0 chr6 4422521 4422675 -177992567 - MIR3 SINE MIR -3 205 34 2206 203 40 143 chr6 4423762 4425073 -177990169 + L1ME3 LINE L1 4987 6153 -9 517 177 32 24 chr6 4425073 4425197 -177990045 + L1MB2 LINE L1 6047 6171 0 275 188 42 0 chr6 4425207 4425255 -177989987 + MLT1L LTR MaLR 337 386 -81 21 0 0 0 chr6 4425373 4425394 -177989848 + AT_rich Low_complexity Low_complexity 1 21 0 221 248 239 44 chr6 4425882 4425995 -177989247 - L2 LINE L2 0 3313 3179 495 205 94 60 chr6 4426313 4426547 -177988695 + MLT1L LTR MaLR 38 279 -336 323 284 118 6 chr6 4426602 4426771 -177988471 + MLT1L LTR MaLR 394 581 -34 483 289 8 0 chr6 4427199 4427320 -177987922 - MER5A DNA MER1_type -67 122 1 185 282 99 56 chr6 4427415 4427486 -177987756 + MIR SINE MIR 111 184 -78 298 271 232 22 chr6 4429507 4429688 -177985554 - MIR SINE MIR -38 224 6 210 214 18 36 chr6 4429722 4429778 -177985464 + L2 LINE L2 3215 3269 -3 183 129 0 0 chr6 4430652 4430683 -177984559 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 217 236 91 0 chr6 4431346 4431401 -177983841 + MIR SINE MIR 61 120 -142 803 174 0 0 chr6 4433158 4433279 -177981963 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr6 4433423 4433447 -177981795 + AT_rich Low_complexity Low_complexity 1 24 0 10006 159 7 31 chr6 4433507 4436589 -177978653 + L1PA8A LINE L1 5 3071 -3390 201 74 0 0 chr6 4436602 4436629 -177978613 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 18527 112 8 14 chr6 4436629 4439259 -177975983 + L1PA8A LINE L1 3051 5670 -776 2198 63 41 0 chr6 4439259 4439552 -177975690 + AluY SINE Alu 1 304 0 18527 112 8 14 chr6 4439552 4440313 -177974929 + L1PA8A LINE L1 5670 6434 -12 188 349 0 0 chr6 4440450 4440513 -177974729 - L2 LINE L2 -249 3064 3002 197 267 50 0 chr6 4440990 4441050 -177974192 + L2 LINE L2 3250 3312 -1 28 0 0 0 chr6 4441194 4441222 -177974020 + AT_rich Low_complexity Low_complexity 1 28 0 468 252 164 25 chr6 4441353 4441512 -177973730 + MER5A DNA MER1_type 9 189 0 664 52 0 0 chr6 4442057 4442134 -177973108 - MER4B LTR ERV1 0 610 534 251 250 0 0 chr6 4442146 4442198 -177973044 + LTR30 LTR ERV1 1 52 -670 1005 134 38 91 chr6 4442198 4442475 -177972767 + LTR12 LTR ERV1 55 230 -484 275 227 98 30 chr6 4442483 4442615 -177972627 + LTR12 LTR ERV1 142 282 -432 368 186 35 0 chr6 4442617 4442703 -177972539 + LTR30 LTR ERV1 551 639 -83 687 102 0 0 chr6 4442706 4442794 -177972448 + LTR12 LTR ERV1 478 565 -149 334 94 9 13 chr6 4442794 4442854 -177972388 - MLT2D LTR ERVL -370 44 1 457 284 99 12 chr6 4443095 4443257 -177971985 + MIR SINE MIR 8 183 -79 276 231 77 0 chr6 4443282 4443360 -177971882 - L2 LINE L2 -17 3296 3213 598 224 29 81 chr6 4443965 4444338 -177970904 + MLT1D LTR MaLR 20 356 -149 474 264 31 0 chr6 4444408 4444537 -177970705 + L1MEc LINE L1 1509 1641 -4755 361 286 119 30 chr6 4444540 4444708 -177970534 + MIR SINE MIR 68 250 -12 2470 123 37 13 chr6 4444942 4445323 -177969919 - MLT1B LTR MaLR 0 390 1 4860 265 63 34 chr6 4445520 4446360 -177968882 + L1MEc LINE L1 2112 2926 -3289 2109 105 44 0 chr6 4446360 4446656 -177968586 + AluY SINE Alu 1 309 -2 4860 265 63 34 chr6 4446656 4448105 -177967137 + L1MEc LINE L1 2926 4436 -1779 8875 223 70 42 chr6 4448113 4449356 -177965886 + L1MCb LINE L1 180 1387 -5177 1552 211 7 3 chr6 4449356 4449664 -177965578 + AluJo SINE Alu 1 309 -3 8875 223 70 42 chr6 4449664 4450010 -177965232 + L1MCb LINE L1 1387 1722 -4842 2203 138 53 28 chr6 4450010 4450365 -177964877 - THE1B LTR MaLR 0 364 1 8875 223 70 42 chr6 4450365 4453021 -177962221 + L1MCb LINE L1 1722 4630 -1934 2182 118 0 6 chr6 4453021 4453334 -177961908 + AluY SINE Alu 1 311 0 8875 223 70 42 chr6 4453334 4454092 -177961150 + L1MCb LINE L1 4630 5365 -1199 2305 78 0 7 chr6 4454162 4454469 -177960773 - AluSx SINE Alu 0 305 1 1123 8 0 0 chr6 4456116 4456236 -177959006 + 5S rRNA rRNA 1 120 -1 3713 50 2 0 chr6 4456236 4456698 -177958544 - Harlequin LTR ERV1 -6329 567 105 186 216 318 34 chr6 4456780 4456868 -177958374 + MER5A DNA MER1_type 1 113 -76 728 210 24 24 chr6 4456869 4457036 -177958206 + MER5A DNA MER1_type 1 167 -22 194 259 111 0 chr6 4457045 4457099 -177958143 + MER5A DNA MER1_type 110 169 -20 2598 192 65 2 chr6 4457495 4458015 -177957227 + MER74A LTR ERVL 6 558 0 291 329 81 13 chr6 4458416 4458565 -177956677 + MIR SINE MIR 100 258 -4 999 164 66 33 chr6 4458816 4458975 -177956267 + MER5A DNA MER1_type 1 168 -21 2098 135 66 14 chr6 4458975 4459322 -177955920 + MLT1A1 LTR MaLR 1 365 0 999 164 66 33 chr6 4459322 4459345 -177955897 + MER5A DNA MER1_type 168 189 0 1922 144 47 39 chr6 4459784 4460144 -177955098 - MLT1A1 LTR MaLR -2 363 1 497 194 10 10 chr6 4460552 4460655 -177954587 + MER5B DNA MER1_type 73 175 -3 2378 109 0 0 chr6 4461056 4461368 -177953874 - AluSx SINE Alu 0 312 1 2195 171 94 20 chr6 4461620 4462065 -177953177 + MLT2B2 LTR ERVL 1 478 -37 2095 74 4 4 chr6 4462500 4462770 -177952472 + AluSc SINE Alu 39 308 -1 1752 248 47 39 chr6 4463051 4463544 -177951698 + MLT1J LTR MaLR 7 503 -8 1223 174 43 13 chr6 4463702 4463932 -177951310 - MER96B DNA MER1_type? -180 237 1 262 171 0 0 chr6 4464420 4464461 -177950781 - 5S rRNA rRNA -79 42 2 306 0 0 0 chr6 4464705 4464739 -177950503 + (CA)n Simple_repeat Simple_repeat 1 34 0 2903 222 75 48 chr6 4464745 4465533 -177949709 + MER21B LTR ERV1 16 824 -39 4971 150 49 3 chr6 4466315 4467149 -177948093 + L1MA4A LINE L1 4443 5237 -1066 182 61 0 30 chr6 4467149 4467182 -177948060 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4971 150 49 3 chr6 4467182 4467978 -177947264 + L1MA4A LINE L1 5237 6143 -160 1531 181 69 0 chr6 4467978 4468255 -177946987 + AluJb SINE Alu 1 296 -16 1986 136 0 10 chr6 4468302 4468597 -177946645 - L1PB1 LINE L1 -1 6150 5859 2300 82 38 0 chr6 4468597 4468888 -177946354 + AluSg SINE Alu 1 302 -8 259 254 16 32 chr6 4469040 4469103 -177946139 - L1M3c LINE L1 -6078 63 2 291 200 125 0 chr6 4469119 4469199 -177946043 - L1MC3 LINE L1 -8 7777 7688 222 303 13 0 chr6 4469206 4469282 -177945960 - L2 LINE L2 -2382 932 856 991 255 111 12 chr6 4469291 4469616 -177945626 - MLT1I LTR MaLR -25 384 28 2411 283 27 35 chr6 4469617 4470443 -177944799 - L2 LINE L2 -2479 835 17 284 238 38 12 chr6 4470751 4470831 -177944411 - L2 LINE L2 -1877 1437 1356 716 252 59 64 chr6 4470844 4471224 -177944018 - L1M4 LINE L1 -1602 4544 4165 2336 109 0 3 chr6 4471224 4471535 -177943707 - AluSg SINE Alu 0 310 1 716 252 59 64 chr6 4471535 4471594 -177943648 - L1M4 LINE L1 -1981 4165 4107 289 287 39 62 chr6 4471606 4471864 -177943378 - L1MEd LINE L1 -5164 955 704 771 216 30 24 chr6 4471865 4472032 -177943210 - FRAM SINE Alu -16 160 1 267 279 51 0 chr6 4472032 4472111 -177943131 - L1MEd LINE L1 -5416 703 621 4483 169 52 6 chr6 4472244 4473064 -177942178 - L1MD1 LINE L1 0 6242 5385 1808 37 0 5 chr6 4473276 4473492 -177941750 - L1PA5 LINE L1 -1 6153 5939 1430 251 48 5 chr6 4473492 4473910 -177941332 - L1MD1 LINE L1 -745 5401 4966 1250 276 59 46 chr6 4474083 4474644 -177940598 + Charlie7 DNA MER1_type 120 687 -1925 486 239 39 72 chr6 4474660 4474840 -177940402 - MLT1J LTR MaLR -12 499 326 294 164 0 0 chr6 4474841 4474902 -177940340 - L1MC3 LINE L1 -727 7058 6998 * 854 54 1 1 chr6 4474877 4474902 -177940340 + L1P LINE L1 5225 5249 -897 1384 19 0 0 chr6 4474902 4475059 -177940183 - L1PA4 LINE L1 -5 6150 5994 854 54 1 1 chr6 4475059 4475163 -177940079 + L1P LINE L1 5248 5354 -792 180 0 0 0 chr6 4475928 4475948 -177939294 + (TG)n Simple_repeat Simple_repeat 2 21 0 325 181 38 9 chr6 4476778 4476883 -177938359 + (TA)n Simple_repeat Simple_repeat 1 108 0 281 299 132 29 chr6 4477196 4477370 -177937872 - MIR SINE MIR -1 261 70 182 36 0 36 chr6 4477516 4477544 -177937698 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1217 55 0 0 chr6 4477544 4477689 -177937553 - MER107 DNA MER1_type -52 145 1 424 236 9 9 chr6 4477729 4477835 -177937407 + MER5B DNA MER1_type 73 178 0 327 307 9 0 chr6 4478108 4478222 -177937020 + L1ME LINE L1 5458 5572 -598 22 0 0 0 chr6 4478390 4478412 -177936830 + AT_rich Low_complexity Low_complexity 1 22 0 819 139 12 78 chr6 4478757 4478923 -177936319 + AluJo SINE Alu 85 239 -73 326 181 0 14 chr6 4478958 4479030 -177936212 + GA-rich Low_complexity Low_complexity 4 74 0 261 139 0 0 chr6 4479129 4479172 -177936070 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1936 254 75 34 chr6 4479437 4480295 -177934947 + L1MEc LINE L1 499 1391 -5005 259 259 76 0 chr6 4481106 4481237 -177934005 - L1ME4a LINE L1 -3 6118 5978 275 177 51 0 chr6 4481560 4481639 -177933603 + (TAA)n Simple_repeat Simple_repeat 1 83 0 240 324 59 0 chr6 4482119 4482221 -177933021 - L2 LINE L2 -932 2382 2275 247 296 241 0 chr6 4482852 4482960 -177932282 - MIR SINE MIR -77 185 52 215 274 71 36 chr6 4483049 4483133 -177932109 - MIR SINE MIR -58 204 118 504 270 77 62 chr6 4483974 4484233 -177931009 - MLT1J LTR MaLR -4 507 245 1837 192 25 25 chr6 4484578 4484943 -177930299 - MLT1A1 LTR MaLR 0 365 1 191 255 177 21 chr6 4484945 4485086 -177930156 - L2 LINE L2 -11 3302 3140 691 241 294 0 chr6 4486041 4486361 -177928881 + Charlie2a DNA MER1_type 7 420 -2442 861 246 29 14 chr6 4486395 4486671 -177928571 + Charlie2a DNA MER1_type 738 1017 -1845 410 182 0 23 chr6 4486668 4486756 -177928486 + Charlie2a DNA MER1_type 2748 2833 -29 * 248 278 0 0 chr6 4489128 4489200 -177926042 + tRNA-Ile-ATT tRNA tRNA 3 74 -3 229 216 0 0 chr6 4490545 4490596 -177924646 + MER116 DNA Mariner 25 75 -5 1792 175 3 19 chr6 4490683 4490991 -177924251 + AluJo SINE Alu 1 303 -9 675 294 58 39 chr6 4491000 4491381 -177923861 + L1ME4a LINE L1 5377 5764 -357 352 327 62 34 chr6 4491386 4491594 -177923648 + MIR SINE MIR 13 226 -36 319 212 73 53 chr6 4491772 4491923 -177923319 + L1ME4a LINE L1 5964 6117 -4 1744 140 135 83 chr6 4492325 4492769 -177922473 + MLT1C LTR MaLR 1 467 0 1569 167 50 83 chr6 4493271 4493655 -177921587 + MLT1A2 LTR MaLR 4 374 0 601 274 71 56 chr6 4493720 4493920 -177921322 - MLT1J LTR MaLR -238 273 67 2218 111 20 0 chr6 4493920 4494226 -177921016 - AluSx SINE Alu 0 312 1 601 274 71 56 chr6 4494226 4494277 -177920965 - MLT1J LTR MaLR -444 67 18 706 270 35 66 chr6 4494942 4495383 -177919859 + LTR35 LTR ERV1 134 556 0 2248 106 0 28 chr6 4496141 4496462 -177918780 - AluSq SINE Alu -1 312 1 265 200 18 0 chr6 4496708 4496763 -177918479 + L2 LINE L2 3257 3312 -1 340 234 19 37 chr6 4497254 4497361 -177917881 - MER5A DNA MER1_type -80 109 5 3655 7 0 3 chr6 4497575 4498118 -177917124 + L1P1 LINE L1 5119 5660 -495 185 74 56 37 chr6 4498122 4498176 -177917066 + A-rich Low_complexity Low_complexity 1 55 0 413 151 0 27 chr6 4498677 4498750 -177916492 - MER20 DNA MER1_type 0 219 149 4586 100 14 5 chr6 4498750 4499388 -177915854 - LTR9B LTR ERV1 0 644 1 3482 128 16 15 chr6 4499401 4499947 -177915295 + LTR10A LTR ERV1 1 547 -62 726 154 0 99 chr6 4499958 4500120 -177915122 - MER20 DNA MER1_type -73 146 1 299 217 85 40 chr6 4501585 4501735 -177913507 + L1ME4a LINE L1 5698 5854 -267 352 276 20 53 chr6 4501773 4501925 -177913317 + L1ME4a LINE L1 5975 6121 0 1102 189 112 18 chr6 4501964 4502461 -177912781 + MLT1E1 LTR MaLR 3 654 0 303 319 62 35 chr6 4502739 4502996 -177912246 + L2 LINE L2 1107 1370 -1944 4938 100 10 13 chr6 4503093 4503786 -177911456 - LTR8 LTR ERV1 0 691 1 1119 265 21 4 chr6 4503944 4504223 -177911019 - MER87 LTR ERV1 -48 493 210 241 292 124 11 chr6 4504295 4504384 -177910858 - LTR8 LTR ERV1 -566 125 27 352 311 152 20 chr6 4504452 4505012 -177910230 + L2 LINE L2 1636 2269 -1045 203 348 24 40 chr6 4505012 4505190 -177910052 + L2 LINE L2 2457 2631 -683 695 202 60 24 chr6 4505190 4505358 -177909884 + MER5B DNA MER1_type 1 174 -4 203 348 24 40 chr6 4505358 4505432 -177909810 + L2 LINE L2 2631 2705 -609 768 235 0 20 chr6 4505441 4505594 -177909648 + AluJo SINE Alu 2 151 -161 1221 205 73 14 chr6 4505595 4505883 -177909359 - MLT1A2 LTR MaLR -66 308 4 444 285 8 0 chr6 4506399 4506529 -177908713 + MIR SINE MIR 88 218 -44 1069 152 12 0 chr6 4507471 4507635 -177907607 - AluJb SINE Alu -146 166 1 1862 205 21 36 chr6 4507638 4508111 -177907131 - L1 LINE L1 -817 5329 4864 777 185 25 37 chr6 4508114 4508276 -177906966 - MLT1A2 LTR MaLR -214 160 1 773 135 0 0 chr6 4509553 4509664 -177905578 + L1 LINE L1 4864 4974 -1172 545 42 14 0 chr6 4511107 4511179 -177904063 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 468 48 0 0 chr6 4511403 4511466 -177903776 + (CA)n Simple_repeat Simple_repeat 1 63 0 222 261 0 0 chr6 4511933 4511979 -177903263 + (TA)n Simple_repeat Simple_repeat 1 46 0 1360 177 129 33 chr6 4511998 4512332 -177902910 - MLT2D LTR ERVL -48 366 1 2068 111 4 0 chr6 4512472 4512751 -177902491 + AluSx SINE Alu 16 295 -17 273 230 115 35 chr6 4513148 4513235 -177902007 - L2 LINE L2 -8 3305 3212 373 289 39 27 chr6 4513308 4513571 -177901671 + L2 LINE L2 2711 2977 -336 2554 217 60 19 chr6 4513794 4514357 -177900885 - MLT1E LTR MaLR 0 593 8 239 293 135 30 chr6 4515466 4515599 -177899643 + MIR SINE MIR 21 167 -95 3083 145 25 33 chr6 4515691 4516242 -177899000 + LTR10A LTR ERV1 1 547 -62 2065 173 138 50 chr6 4516662 4517164 -177898078 - LTR10B LTR ERV1 -1 546 1 1911 155 54 57 chr6 4517207 4517593 -177897649 - MLT1B LTR MaLR -5 385 1 1678 175 22 0 chr6 4519033 4519307 -177895935 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr6 4519307 4519328 -177895914 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1013 191 5 5 chr6 4519543 4519731 -177895511 - MER53 DNA DNA 0 189 2 263 261 142 30 chr6 4519890 4520024 -177895218 - MLT1L LTR MaLR -49 566 418 2533 69 0 0 chr6 4520422 4520725 -177894517 - AluSc SINE Alu -6 303 1 2464 74 0 16 chr6 4520727 4521036 -177894206 - AluY SINE Alu -7 304 1 22 0 0 0 chr6 4521038 4521060 -177894182 + AT_rich Low_complexity Low_complexity 1 22 0 1710 68 42 13 chr6 4521060 4521296 -177893946 - L1MA1 LINE L1 0 6302 6060 229 309 62 0 chr6 4522181 4522262 -177892980 + MIR SINE MIR 45 130 -78 623 231 158 60 chr6 4522262 4522630 -177892612 - MLT1J LTR MaLR 0 511 108 307 253 13 0 chr6 4522782 4522861 -177892381 - L2 LINE L2 0 3313 3234 2212 101 30 0 chr6 4523113 4523409 -177891833 + AluSc SINE Alu 1 305 -4 624 329 43 37 chr6 4523624 4523998 -177891244 + L1ME4a LINE L1 5518 5893 -228 2146 109 0 0 chr6 4524027 4524302 -177890940 - AluSg SINE Alu -34 276 2 255 361 30 15 chr6 4524862 4524995 -177890247 - L2 LINE L2 0 3272 3138 1910 159 3 0 chr6 4525225 4525520 -177889722 - AluJo SINE Alu -16 296 1 437 274 149 23 chr6 4525686 4525901 -177889341 - MIR SINE MIR -1 261 20 319 290 8 73 chr6 4525905 4526029 -177889213 - MIR SINE MIR -84 178 63 1055 200 33 79 chr6 4526562 4526892 -177888350 + L1MA10 LINE L1 6018 6332 -2 1333 197 24 14 chr6 4526911 4527200 -177888042 + L1MB8 LINE L1 5881 6172 -6 388 263 143 6 chr6 4527247 4527422 -177887820 + MARNA DNA Mariner 211 409 -177 466 264 104 42 chr6 4527551 4527744 -177887498 + MIR SINE MIR 58 262 0 191 173 58 19 chr6 4528277 4528329 -177886913 + L2 LINE L2 3207 3260 -12 2675 170 25 48 chr6 4529118 4529678 -177885564 - L1MA10 LINE L1 -1 6333 5787 1212 182 18 1 chr6 4529680 4529985 -177885257 - MER2 DNA MER2_type -1 344 1 1212 124 23 0 chr6 4529989 4530166 -177885076 - L1MA10 LINE L1 -552 5782 5602 2442 155 38 5 chr6 4530170 4530596 -177884646 - L1MB3 LINE L1 -2 6181 5742 420 265 8 17 chr6 4530603 4530720 -177884522 + Charlie8 DNA MER1_type 102 217 -2200 381 321 179 19 chr6 4531266 4531574 -177883668 - L3b LINE CR1 -125 1458 1102 554 222 163 7 chr6 4532104 4532257 -177882985 + MER5A DNA MER1_type 13 189 0 207 318 127 27 chr6 4532448 4532558 -177882684 - L2 LINE L2 -16 3256 3136 367 169 0 0 chr6 4532820 4532879 -177882363 + MER20 DNA MER1_type 159 217 -2 272 61 0 0 chr6 4532926 4532959 -177882283 + MLT1B LTR MaLR 1 33 -357 419 265 48 78 chr6 4532961 4533087 -177882155 + L2 LINE L2 1521 1642 -1672 1133 188 32 37 chr6 4533087 4533305 -177881937 + MER20 DNA MER1_type 1 217 -2 419 265 48 78 chr6 4533305 4533344 -177881898 + L2 LINE L2 1642 1681 -1633 1437 176 131 42 chr6 4533352 4533524 -177881718 + MLT1B LTR MaLR 1 156 -234 189 0 0 0 chr6 4533524 4533545 -177881697 + (TC)n Simple_repeat Simple_repeat 2 22 0 1437 176 131 42 chr6 4533545 4533730 -177881512 + MLT1B LTR MaLR 156 390 0 1491 249 29 31 chr6 4533757 4533813 -177881429 + L1ME1 LINE L1 5742 5797 -369 2008 137 67 25 chr6 4533813 4534171 -177881071 - THE1C LTR MaLR 0 375 3 10189 125 26 38 chr6 4534173 4535768 -177879474 - THE1C-int LTR MaLR 0 1580 4 1719 146 109 34 chr6 4535771 4536120 -177879122 - THE1C LTR MaLR 0 375 1 1491 249 29 31 chr6 4536120 4536477 -177878765 + L1ME1 LINE L1 5800 6161 -5 1201 290 172 18 chr6 4536519 4537359 -177877883 + L2 LINE L2 1706 2686 -628 1879 186 93 11 chr6 4537359 4537725 -177877517 + MSTD LTR MaLR 1 396 0 1201 290 172 18 chr6 4537725 4537757 -177877485 + L2 LINE L2 2686 2712 -602 2229 95 3 0 chr6 4538078 4538386 -177876856 + AluSq SINE Alu 1 309 0 236 274 59 0 chr6 4540428 4540530 -177874712 + L1ME LINE L1 5692 5799 -363 1190 128 12 0 chr6 4540689 4540861 -177874381 + AluSg/x SINE Alu 139 312 0 282 198 244 0 chr6 4541024 4541110 -177874132 + HsTC2 DNA Tc2 28 134 -1764 * 556 167 49 42 chr6 4541109 4541253 -177873989 + HsTC2 DNA Tc2 1650 1794 -104 549 243 126 14 chr6 4541254 4541519 -177873723 + L2 LINE L2 2702 3006 -307 1127 257 119 48 chr6 4541679 4542309 -177872933 + L1MC4 LINE L1 7367 8041 -1 494 296 21 0 chr6 4544370 4544512 -177870730 + MIR SINE MIR 80 224 -38 552 201 79 126 chr6 4544841 4545055 -177870187 + MIR SINE MIR 51 254 -8 2120 58 91 4 chr6 4546358 4546633 -177868609 - AluY SINE Alu -12 299 1 3590 54 16 16 chr6 4547605 4548049 -177867193 + L1PA8 LINE L1 5726 6169 -3 495 317 0 12 chr6 4548147 4548308 -177866934 - MIR SINE MIR -6 256 98 229 325 102 15 chr6 4549225 4549422 -177865820 + L2 LINE L2 318 531 -2783 327 304 53 70 chr6 4549501 4549672 -177865570 - MER5B DNA MER1_type -7 171 4 180 358 56 59 chr6 4549678 4550002 -177865240 + L2 LINE L2 864 1186 -2128 398 233 0 0 chr6 4550149 4550222 -177865020 + Tigger3(Golem) DNA MER2_type 3 75 -2954 651 196 0 0 chr6 4550222 4550329 -177864913 - FLAM_C SINE Alu -35 108 2 492 217 57 23 chr6 4550331 4550506 -177864736 + L1ME1 LINE L1 4279 4459 -1687 * 1401 226 72 24 chr6 4550492 4550638 -177864604 + L1ME1 LINE L1 5643 5781 -385 2355 150 25 34 chr6 4550638 4551045 -177864197 - MER57A LTR ERV1 0 403 1 1401 226 72 24 chr6 4551045 4551313 -177863929 + L1ME1 LINE L1 5781 6077 -89 1557 201 43 23 chr6 4551345 4551743 -177863499 + MER97b DNA MER1_type? 454 859 -194 389 185 46 28 chr6 4551975 4552083 -177863159 + L1 LINE L1 4884 4993 -1153 373 289 50 28 chr6 4552110 4552290 -177862952 + L1MB7 LINE L1 24 207 -6652 230 217 14 14 chr6 4552395 4552464 -177862778 + (TA)n Simple_repeat Simple_repeat 1 69 0 1848 142 32 98 chr6 4552464 4552694 -177862548 + Tigger2 DNA MER2_type 1 245 -2473 2026 120 4 0 chr6 4552694 4552969 -177862273 - AluSx SINE Alu -32 280 5 1848 142 32 98 chr6 4552969 4553205 -177862037 + Tigger2 DNA MER2_type 245 2713 -5 325 345 36 16 chr6 4553226 4553420 -177861822 + L1M4b LINE L1 2663 2860 -4278 802 181 6 19 chr6 4553429 4553589 -177861653 + L1MB7 LINE L1 328 485 -6370 * 14028 153 38 10 chr6 4553582 4555848 -177859394 + L1M1 LINE L1 1361 3752 -3813 1768 152 0 4 chr6 4555848 4556132 -177859110 + AluSx SINE Alu 28 310 0 14028 153 38 10 chr6 4556132 4557243 -177857999 + L1M1 LINE L1 3752 4831 -2734 1311 162 27 96 chr6 4557236 4557481 -177857761 + L1MB7 LINE L1 1210 1428 -5427 * 2349 84 3 0 chr6 4557481 4557777 -177857465 - AluY SINE Alu -14 297 1 1311 162 27 96 chr6 4557777 4557864 -177857378 + L1MB7 LINE L1 1428 1519 -5336 2036 204 42 8 chr6 4559093 4559569 -177855673 + L1MB7 LINE L1 1501 1992 -4863 3455 199 60 12 chr6 4559583 4560366 -177854876 - MER21B LTR ERV1 0 863 2 1441 235 48 29 chr6 4560367 4560843 -177854399 + L1MB7 LINE L1 1998 2482 -4477 1246 276 10 17 chr6 4561231 4561713 -177853529 + L1MB7 LINE L1 2581 3059 -3900 5723 127 41 7 chr6 4561713 4562830 -177852412 + L1PB3 LINE L1 5006 6154 0 1633 158 18 40 chr6 4562845 4563123 -177852119 + AluSx SINE Alu 1 272 -40 221 0 0 33 chr6 4563139 4563169 -177852073 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 585 211 62 23 chr6 4563320 4563448 -177851794 + AluJo SINE Alu 3 135 -177 9434 199 52 32 chr6 4563462 4564984 -177850258 + L1MB7 LINE L1 3045 4535 -2460 203 61 30 0 chr6 4564984 4565017 -177850225 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1662 189 4 0 chr6 4565019 4565299 -177849943 - AluJb SINE Alu -31 281 1 9434 199 52 32 chr6 4565299 4565689 -177849553 + L1MB7 LINE L1 4535 4916 -2079 237 65 0 0 chr6 4565689 4565720 -177849522 + (CA)n Simple_repeat Simple_repeat 2 32 0 9434 199 52 32 chr6 4565720 4567449 -177847793 + L1MB7 LINE L1 4916 6858 -137 621 72 0 0 chr6 4567449 4567532 -177847710 + (TG)n Simple_repeat Simple_repeat 1 83 0 9434 199 52 32 chr6 4567532 4567654 -177847588 + L1MB7 LINE L1 6858 6976 -19 6049 205 36 56 chr6 4567704 4568466 -177846776 + L1MA8 LINE L1 3238 4014 -2277 186 43 0 0 chr6 4568466 4568489 -177846753 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2264 110 0 0 chr6 4568489 4568788 -177846454 - AluSx SINE Alu -13 299 1 6049 205 36 56 chr6 4568788 4569092 -177846150 + L1MA8 LINE L1 4013 4322 -1969 2453 146 50 8 chr6 4569092 4569470 -177845772 + MSTD LTR MaLR 1 394 -2 6049 205 36 56 chr6 4569470 4571613 -177843629 + L1MA8 LINE L1 4322 6290 -1 2362 212 47 77 chr6 4571617 4572477 -177842765 + L1MD3 LINE L1 4610 5439 -727 312 210 200 10 chr6 4572481 4572581 -177842661 + FLAM_A SINE Alu 6 124 -9 3066 247 117 29 chr6 4572583 4573848 -177841394 + L1MD3 LINE L1 5435 6811 -1184 801 228 107 38 chr6 4573858 4574147 -177841095 + L2 LINE L2 3005 3313 0 696 242 82 6 chr6 4574301 4574483 -177840759 - MER91A DNA MER1_type 0 196 1 4192 152 31 11 chr6 4575713 4576457 -177838785 + L1MB3 LINE L1 5289 6047 -136 625 288 79 46 chr6 4576457 4576888 -177838354 + L1ME4a LINE L1 5526 5970 -151 338 221 58 0 chr6 4576901 4576987 -177838255 + L1ME4a LINE L1 6031 6121 0 1026 140 0 0 chr6 4577315 4577336 -177837906 + (GGAA)n Simple_repeat Simple_repeat 1 200 0 1026 140 0 0 chr6 4577336 4577515 -177837727 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 233 325 79 0 chr6 4578988 4579102 -177836140 + L2 LINE L2 2916 3038 -234 361 307 62 20 chr6 4579192 4579350 -177835892 + MIR SINE MIR 30 191 -66 250 283 97 21 chr6 4579559 4579704 -177835538 - MER5B DNA MER1_type -2 176 21 204 229 33 33 chr6 4579724 4579785 -177835457 + CT-rich Low_complexity Low_complexity 6 66 0 242 289 29 29 chr6 4580409 4580513 -177834729 + L2 LINE L2 2935 3038 -234 1905 108 52 3 chr6 4582258 4582544 -177832698 + AluSx SINE Alu 1 300 -12 202 154 0 26 chr6 4583133 4583172 -177832070 - L2 LINE L2 -79 3234 3197 746 142 14 7 chr6 4583422 4583563 -177831679 + L1MA8 LINE L1 6146 6287 -4 1679 130 19 52 chr6 4583571 4583878 -177831364 + AluSx SINE Alu 1 297 -15 1660 76 23 2 chr6 4584458 4584837 -177830405 - MLT2A2 LTR ERVL 0 453 1 350 254 0 18 chr6 4586172 4586337 -177828905 + (GTATG)n Simple_repeat Simple_repeat 3 164 0 453 239 150 60 chr6 4586536 4586703 -177828539 - MIR SINE MIR -31 231 50 450 311 0 16 chr6 4587432 4587615 -177827627 + (CA)n Simple_repeat Simple_repeat 1 180 0 275 275 0 13 chr6 4587808 4587957 -177827285 + (GTATG)n Simple_repeat Simple_repeat 1 147 0 267 294 0 0 chr6 4589066 4589134 -177826108 + (GCATG)n Simple_repeat Simple_repeat 5 72 0 364 231 135 52 chr6 4589379 4589574 -177825668 - MIR SINE MIR -29 233 16 731 272 76 71 chr6 4589840 4590248 -177824994 - MLT1J LTR MaLR -78 433 24 2577 120 10 10 chr6 4590722 4591106 -177824136 + MLT1B LTR MaLR 7 390 0 1515 158 93 0 chr6 4592265 4592524 -177822718 + AluJo SINE Alu 1 283 -19 1960 117 7 3 chr6 4592561 4592859 -177822383 + AluSc SINE Alu 1 299 -10 239 333 167 0 chr6 4593314 4593434 -177821808 + MIR3 SINE MIR 51 190 -18 978 238 19 0 chr6 4594308 4594514 -177820728 - MER63A DNA MER1_type 0 210 1 190 267 0 0 chr6 4595450 4595495 -177819747 + L2 LINE L2 3269 3313 0 32 0 0 0 chr6 4596985 4597017 -177818225 + AT_rich Low_complexity Low_complexity 1 32 0 541 256 168 57 chr6 4597396 4597693 -177817549 - L1MDa LINE L1 -3222 3318 2989 267 274 79 66 chr6 4597730 4597838 -177817404 - L1MDa LINE L1 -3636 2904 2799 2035 129 3 0 chr6 4597838 4598147 -177817095 - AluSx SINE Alu -2 310 1 267 274 79 66 chr6 4598147 4598341 -177816901 - L1MDa LINE L1 -3741 2799 2598 1855 141 30 3 chr6 4598355 4598659 -177816583 + AluJb SINE Alu 1 312 0 336 230 71 26 chr6 4598747 4598860 -177816382 - L1MDa LINE L1 -3982 2558 2441 448 295 76 55 chr6 4599200 4599658 -177815584 - HAL1 LINE L1 -742 1765 1298 286 171 0 0 chr6 4599667 4599708 -177815534 - Tigger5 DNA MER2_type 0 2323 2283 250 233 0 0 chr6 4599716 4599759 -177815483 + Tigger5 DNA MER2_type 2278 2320 -3 * 314 247 0 27 chr6 4599759 4599828 -177815414 - Tigger5 DNA MER2_type -2256 67 1 317 300 66 37 chr6 4599869 4600112 -177815130 - L1MDa LINE L1 -4975 1555 1306 1675 136 0 8 chr6 4600298 4600555 -177814687 + AluSx SINE Alu 43 297 -15 3033 25 3 0 chr6 4600555 4600912 -177814330 - L1PA3 LINE L1 -1005 5141 4784 7922 22 0 0 chr6 4600912 4601984 -177813258 + L1PA3 LINE L1 5141 6209 0 333 157 49 10 chr6 4602020 4602122 -177813120 + CT-rich Low_complexity Low_complexity 1 106 0 834 295 66 0 chr6 4603064 4603305 -177811937 + MIR SINE MIR 1 257 -5 1683 154 4 7 chr6 4603324 4603603 -177811639 + AluJb SINE Alu 1 278 -34 446 0 19 0 chr6 4603606 4603660 -177811582 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 238 287 169 75 chr6 4603682 4604292 -177810950 + L2 LINE L2 2164 2830 -484 404 335 85 48 chr6 4604337 4604630 -177810612 + L2 LINE L2 2946 3249 -23 451 262 56 76 chr6 4604854 4605030 -177810212 + L1MC/D LINE L1 5196 5374 -1024 1539 185 3 27 chr6 4605030 4605327 -177809915 - AluJb SINE Alu -22 290 1 451 262 56 76 chr6 4605327 4605594 -177809648 + L1MC/D LINE L1 5374 5622 -776 400 255 80 92 chr6 4605905 4606156 -177809086 + MLT1L LTR MaLR 10 257 -358 2744 216 174 55 chr6 4606207 4607153 -177808089 + L1MC4a LINE L1 6442 7500 -308 2056 121 0 0 chr6 4607207 4607515 -177807727 + AluSx SINE Alu 1 308 0 365 280 9 9 chr6 4607547 4607654 -177807588 + L1MC4 LINE L1 7795 7901 -141 291 240 158 23 chr6 4607900 4608071 -177807171 + MLT1K LTR MaLR 395 588 0 2706 19 0 6 chr6 4608174 4608490 -177806752 + AluYb8 SINE Alu 1 314 -4 528 209 34 155 chr6 4608954 4608990 -177806252 + L1MC4 LINE L1 6509 6548 -1494 2148 93 0 10 chr6 4608990 4609281 -177805961 + AluSx SINE Alu 1 288 -24 528 209 34 155 chr6 4609281 4609541 -177805701 + L1MC4 LINE L1 6548 6769 -1273 299 284 101 47 chr6 4609847 4609995 -177805247 + L2 LINE L2 3109 3264 -8 633 192 0 48 chr6 4610628 4610753 -177804489 - MLT1E2 LTR MaLR -3 623 505 1434 164 34 74 chr6 4610753 4610848 -177804394 - AluJo SINE Alu 0 312 215 4610 104 30 47 chr6 4610848 4611551 -177803691 + LTR8 LTR ERV1 1 691 0 1434 164 34 74 chr6 4611551 4611778 -177803464 - AluJo SINE Alu -97 215 3 1593 240 109 27 chr6 4611780 4612255 -177802987 - MLT1E2 LTR MaLR -112 514 1 791 189 0 0 chr6 4612573 4612705 -177802537 + FLAM_C SINE Alu 2 133 0 237 247 148 0 chr6 4613186 4613267 -177801975 - L2 LINE L2 -36 3277 3185 1811 179 43 93 chr6 4614549 4615034 -177800208 - MLT2C2 LTR ERVL -3 461 1 389 294 62 20 chr6 4616327 4616473 -177798769 - L2 LINE L2 0 3272 3121 369 62 0 0 chr6 4616485 4616533 -177798709 + (ATG)n Simple_repeat Simple_repeat 3 50 0 736 207 0 0 chr6 4618708 4618843 -177796399 + FLAM_C SINE Alu 2 136 -7 573 306 120 0 chr6 4618857 4619073 -177796169 + MIR SINE MIR 20 261 -1 507 270 199 5 chr6 4620487 4620683 -177794559 + MIR SINE MIR 2 235 -27 * 788 226 37 26 chr6 4620681 4620871 -177794371 + MIR SINE MIR 68 259 -3 321 179 0 0 chr6 4620876 4620960 -177794282 + (ATG)n Simple_repeat Simple_repeat 1 84 0 1191 213 49 4 chr6 4620981 4621225 -177794017 - LTR8 LTR ERV1 -436 255 1 377 216 14 0 chr6 4621227 4621301 -177793941 + MER5A DNA MER1_type 16 90 -99 851 249 117 42 chr6 4622422 4622824 -177792418 - L1ME3A LINE L1 -130 6032 5601 5641 101 15 16 chr6 4622831 4623494 -177791748 - L1PB1 LINE L1 0 6151 5488 1972 129 3 24 chr6 4623494 4623813 -177791429 - AluSx SINE Alu 0 312 1 5641 101 15 16 chr6 4623813 4624009 -177791233 - L1PB1 LINE L1 -663 5488 5293 1931 67 0 0 chr6 4624022 4624260 -177790982 - LTR17 LTR ERV1 -454 326 89 8320 197 13 38 chr6 4624262 4626090 -177789152 - L1PB1 LINE L1 -852 5294 3516 2378 93 0 0 chr6 4626090 4626390 -177788852 - AluY SINE Alu -11 300 1 8320 197 13 38 chr6 4626390 4626514 -177788728 - L1PB1 LINE L1 -2630 3516 3390 589 255 52 21 chr6 4626626 4626949 -177788293 - L1ME3A LINE L1 -641 5525 5195 2268 111 0 7 chr6 4627649 4627955 -177787287 - AluSx SINE Alu -8 304 1 3067 159 46 9 chr6 4627959 4628543 -177786699 - L1MB3 LINE L1 -1 6182 5577 443 314 7 0 chr6 4628686 4628823 -177786419 - MIR3 SINE MIR -25 183 46 333 0 0 0 chr6 4629221 4629258 -177785984 + (CA)n Simple_repeat Simple_repeat 2 38 0 188 184 26 0 chr6 4629932 4629970 -177785272 + MIR SINE MIR 108 146 -62 301 320 153 0 chr6 4630893 4631043 -177784199 - MER5B DNA MER1_type -5 173 1 191 219 41 73 chr6 4631414 4631537 -177783705 - MIR SINE MIR -50 212 94 431 209 12 0 chr6 4631699 4631785 -177783457 - MER81 DNA DNA -8 106 20 293 188 29 14 chr6 4632211 4632280 -177782962 - Charlie4a DNA MER1_type 0 508 439 436 167 21 0 chr6 4632280 4632376 -177782866 + CT-rich Low_complexity Low_complexity 2 99 0 1894 183 7 0 chr6 4632386 4632692 -177782550 - AluJb SINE Alu -4 308 1 1552 194 140 8 chr6 4632692 4633077 -177782165 - Charlie4a DNA MER1_type -1522 439 1 1574 234 47 20 chr6 4633203 4633645 -177781597 + MLT1C LTR MaLR 1 654 0 187 364 0 0 chr6 4633977 4634065 -177781177 - MIR3 SINE MIR -7 201 114 270 233 78 33 chr6 4634534 4634624 -177780618 - LTR16A1 LTR ERVL -30 427 334 302 274 0 0 chr6 4634730 4634803 -177780439 - MER63 DNA MER1_type -11 1049 977 461 147 0 40 chr6 4634805 4634880 -177780362 - MER63 DNA MER1_type -86 750 679 267 288 0 0 chr6 4635955 4636035 -177779207 + MER116 DNA Mariner 1 80 0 257 330 93 8 chr6 4636174 4636292 -177778950 + MIR3 SINE MIR 12 139 -69 1093 148 44 31 chr6 4637455 4637668 -177777574 + L1MB3 LINE L1 5854 6100 -71 1610 209 3 3 chr6 4637668 4637965 -177777277 + AluJo SINE Alu 1 297 -15 1093 148 44 31 chr6 4637965 4638036 -177777206 + L1MB3 LINE L1 6100 6169 -2 234 333 0 0 chr6 4639644 4639719 -177775523 + L2 LINE L2 3197 3271 -1 306 0 0 0 chr6 4640237 4640271 -177774971 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 56 0 0 chr6 4640390 4640480 -177774762 + Alu SINE Alu 220 309 0 651 228 133 31 chr6 4641996 4642320 -177772922 + LTR33A LTR ERVL 159 515 -8 516 178 0 0 chr6 4642577 4642667 -177772575 - LTR12 LTR ERV1 0 714 625 304 185 29 27 chr6 4642667 4642769 -177772473 - LTR30 LTR ERV1 -92 614 378 269 145 0 65 chr6 4642769 4642831 -177772411 - LTR12 LTR ERV1 -429 285 228 972 162 96 21 chr6 4642888 4643111 -177772131 - LTR12 LTR ERV1 -480 1683 55 269 231 0 0 chr6 4643111 4643163 -177772079 - LTR30 LTR ERV1 -670 52 1 2352 106 0 0 chr6 4643730 4644031 -177771211 - AluSq SINE Alu -12 301 1 349 141 31 0 chr6 4644331 4644395 -177770847 + Alu SINE Alu 235 300 -2 2498 154 55 20 chr6 4644522 4644962 -177770280 - MLT1C LTR MaLR 0 467 13 1679 208 28 48 chr6 4644980 4645374 -177769868 - MLT1C-int LTR MaLR -14 1357 972 2352 108 95 63 chr6 4645899 4646362 -177768880 + L1MA7 LINE L1 5813 6290 -1 1593 159 116 0 chr6 4646372 4646630 -177768612 + AluJb SINE Alu 1 288 -24 282 327 68 19 chr6 4646849 4647011 -177768231 + MER5A DNA MER1_type 20 189 0 426 319 44 22 chr6 4647016 4647198 -177768044 + MIR SINE MIR 18 203 -59 263 278 41 10 chr6 4647325 4647422 -177767820 + MIR SINE MIR 153 252 -10 2256 97 10 3 chr6 4647804 4648102 -177767140 + AluSc SINE Alu 1 300 -9 1949 184 91 30 chr6 4648652 4649114 -177766128 - LTR2B LTR ERV1 0 490 1 232 407 42 0 chr6 4649166 4649284 -177765958 - L2 LINE L2 -27 3245 3123 295 231 51 0 chr6 4649335 4649413 -177765829 + MER58B DNA MER1_type 252 333 -8 742 157 100 7 chr6 4649648 4649788 -177765454 - LTR32 LTR ERVL 0 471 319 1956 181 29 14 chr6 4649790 4650139 -177765103 - LTR32 LTR ERVL -103 368 15 1583 190 74 3 chr6 4650139 4650503 -177764739 + L1MB2 LINE L1 5782 6171 0 764 330 14 17 chr6 4650832 4651178 -177764064 + L2 LINE L2 1973 2317 -997 921 281 118 53 chr6 4651195 4651644 -177763598 - MLT1J LTR MaLR -33 478 1 352 328 82 30 chr6 4651644 4651973 -177763269 + L2 LINE L2 2315 2660 -654 452 287 42 7 chr6 4652032 4652175 -177763067 + L2 LINE L2 2553 2700 -614 2041 142 3 0 chr6 4652225 4652528 -177762714 + AluSx SINE Alu 1 304 -8 200 253 33 80 chr6 4652672 4652822 -177762420 + L2 LINE L2 2949 3091 -181 193 250 52 73 chr6 4652969 4653065 -177762177 + L2 LINE L2 3220 3313 0 708 138 7 51 chr6 4654549 4654687 -177760555 - FRAM SINE Alu -4 172 41 560 285 108 25 chr6 4654997 4655274 -177759968 + L1MC4a LINE L1 5569 5868 -1940 868 123 23 0 chr6 4655293 4655423 -177759819 - FLAM_C SINE Alu 0 133 1 1250 202 96 58 chr6 4655502 4656191 -177759051 - L1ME1 LINE L1 -9 6157 5496 2276 123 0 0 chr6 4656191 4656500 -177758742 - AluSg SINE Alu -1 309 1 2161 121 0 25 chr6 4656500 4656815 -177758427 - AluSx SINE Alu -4 308 2 1250 202 96 58 chr6 4656815 4656894 -177758348 - L1ME1 LINE L1 -670 5496 5421 1852 169 0 7 chr6 4656894 4657195 -177758047 - AluSx SINE Alu -13 299 1 1250 202 96 58 chr6 4657195 4657523 -177757719 - L1ME1 LINE L1 -745 5421 4853 832 164 42 61 chr6 4657916 4658031 -177757211 - AluJo SINE Alu -17 295 182 4999 71 3 2 chr6 4658031 4658663 -177756579 - LTR10E LTR ERV1 0 633 1 832 164 42 61 chr6 4658663 4658712 -177756530 - AluJo SINE Alu -130 182 134 846 150 0 0 chr6 4658712 4658845 -177756397 - AluJo SINE Alu -169 133 1 761 246 42 17 chr6 4659640 4659876 -177755366 - MIR SINE MIR -3 259 18 2148 107 0 57 chr6 4659978 4660295 -177754947 - AluSx SINE Alu -13 299 1 265 376 6 25 chr6 4660532 4660694 -177754548 + MIR SINE MIR 75 233 -29 400 263 105 70 chr6 4660785 4661102 -177754140 + L1MC4a LINE L1 4755 5095 -1051 1941 102 45 0 chr6 4661102 4661392 -177753850 + AluSx SINE Alu 7 308 0 400 263 105 70 chr6 4661392 4661529 -177753713 + L1MC4a LINE L1 5095 5226 -920 374 242 89 8 chr6 4661575 4661699 -177753543 - L2 LINE L2 0 3313 3180 1878 132 11 0 chr6 4661883 4662148 -177753094 + AluSx SINE Alu 7 274 -38 21 0 0 0 chr6 4662155 4662176 -177753066 + AT_rich Low_complexity Low_complexity 1 21 0 1496 183 11 21 chr6 4662247 4662531 -177752711 + AluJo SINE Alu 1 281 -31 2603 74 0 0 chr6 4662543 4662854 -177752388 - AluY SINE Alu 0 311 1 936 304 41 39 chr6 4662874 4663314 -177751928 + L1MC4a LINE L1 5466 5906 -1902 503 216 122 0 chr6 4663314 4663462 -177751780 + MER63C DNA MER1_type 1 166 -764 482 224 46 33 chr6 4663563 4663715 -177751527 - MER63C DNA MER1_type -533 397 244 * 1448 188 20 14 chr6 4663599 4663875 -177751367 + MER63C DNA MER1_type 244 521 -409 1068 213 62 0 chr6 4663875 4664086 -177751156 + MER58A DNA MER1_type 1 224 0 1633 230 65 0 chr6 4664086 4664468 -177750774 + MER63C DNA MER1_type 518 924 -6 271 285 98 16 chr6 4665317 4665440 -177749802 - LTR16C LTR ERVL 0 491 359 1060 212 205 40 chr6 4665459 4665883 -177749359 - MLT1G LTR MaLR 0 590 97 1193 178 57 13 chr6 4665975 4666205 -177749037 - MLT1F1 LTR MaLR -299 268 29 204 40 0 0 chr6 4666222 4666247 -177748995 + (TG)n Simple_repeat Simple_repeat 2 26 0 1100 264 190 26 chr6 4666267 4666364 -177748878 - L1ME3A LINE L1 -232 5938 5858 2516 123 21 3 chr6 4666364 4666747 -177748495 - MLT1B LTR MaLR 0 390 1 1100 264 190 26 chr6 4666747 4667231 -177748011 - L1ME3A LINE L1 -312 5858 5265 2247 124 0 0 chr6 4667470 4667769 -177747473 + AluSx SINE Alu 1 299 -13 975 161 37 0 chr6 4668836 4668998 -177746244 - MER20 DNA MER1_type 0 219 52 2538 162 5 0 chr6 4669054 4669455 -177745787 - MER57A LTR ERV1 0 403 1 15608 124 30 3 chr6 4669510 4671860 -177743382 - Tigger1 DNA MER2_type 0 2418 5 347 200 122 0 chr6 4671915 4672005 -177743237 + U13 snRNA snRNA 1 101 -3 1766 88 0 0 chr6 4672595 4672811 -177742431 + AluSg/x SINE Alu 89 304 -8 205 285 49 57 chr6 4674085 4674208 -177741034 + MER5B DNA MER1_type 2 123 -55 180 212 0 0 chr6 4674563 4674596 -177740646 + L2 LINE L2 3230 3262 -10 2406 95 0 0 chr6 4674615 4674911 -177740331 - AluSg SINE Alu -14 296 1 1990 118 0 24 chr6 4675149 4675437 -177739805 + AluSx SINE Alu 22 302 -10 252 232 85 67 chr6 4676558 4676722 -177738520 - L1ME4a LINE L1 -2 6119 5953 524 229 97 0 chr6 4677000 4677175 -177738067 - MIR SINE MIR 0 262 71 538 281 113 30 chr6 4677788 4678194 -177737048 - HAL1 LINE L1 0 2507 2068 * 6821 223 69 24 chr6 4678189 4680817 -177734425 + L1ME1 LINE L1 3153 5901 -265 1693 154 78 7 chr6 4680826 4681132 -177734110 + MER2 DNA MER2_type 17 344 -1 713 247 5 73 chr6 4681136 4681337 -177733905 + L1ME1 LINE L1 5905 6091 -75 941 220 18 23 chr6 4681337 4681555 -177733687 - MER20 DNA MER1_type -1 218 2 713 247 5 73 chr6 4681555 4681572 -177733670 + L1ME1 LINE L1 6091 6108 -58 596 177 21 0 chr6 4681576 4681672 -177733570 + AluJ/FLAM SINE Alu 3 100 -212 39 50 0 0 chr6 4681672 4681732 -177733510 + AT_rich Low_complexity Low_complexity 1 60 0 1712 158 21 7 chr6 4681732 4682016 -177733226 - AluJb SINE Alu -24 288 1 2148 124 3 7 chr6 4682053 4682352 -177732890 + AluSx SINE Alu 1 298 -14 684 293 226 44 chr6 4682550 4683482 -177731760 - HAL1 LINE L1 -931 1576 475 204 125 42 42 chr6 4684668 4684740 -177730502 + (TAA)n Simple_repeat Simple_repeat 1 72 0 1894 261 92 53 chr6 4684790 4685012 -177730230 + L1M4 LINE L1 2210 2422 -3724 2085 121 14 3 chr6 4685012 4685301 -177729941 + AluSx SINE Alu 1 292 -20 1894 261 92 53 chr6 4685301 4686458 -177728784 + L1M4 LINE L1 2422 3643 -2503 1027 236 159 26 chr6 4686480 4687209 -177728033 - L2 LINE L2 -73 3240 2410 234 215 15 15 chr6 4687228 4687293 -177727949 + GA-rich Low_complexity Low_complexity 2 66 0 4295 27 0 0 chr6 4687505 4687994 -177727248 - L1PA4 LINE L1 -4 6151 5663 838 108 58 0 chr6 4688000 4688120 -177727122 - FLAM_C SINE Alu -10 133 7 361 268 49 0 chr6 4688209 4688332 -177726910 - MIR3 SINE MIR -69 139 11 1317 153 77 32 chr6 4689954 4690202 -177725040 + AluJo SINE Alu 39 297 -15 1576 134 0 17 chr6 4690262 4690493 -177724749 + AluJb SINE Alu 17 243 -69 270 81 0 0 chr6 4690504 4690541 -177724701 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1005 163 0 0 chr6 4692021 4692174 -177723068 + FRAM SINE Alu 1 153 -13 671 221 21 106 chr6 4692349 4692680 -177722562 + MLT1J1 LTR MaLR 35 337 -109 294 293 125 66 chr6 4694159 4694583 -177720659 - MLT1K LTR MaLR 0 588 140 2051 141 0 51 chr6 4695146 4695501 -177719741 + MER1B DNA MER1_type 1 337 0 2074 149 74 3 chr6 4695570 4695933 -177719309 + MLT1B LTR MaLR 1 389 -1 209 304 67 38 chr6 4697362 4697474 -177717768 + MIR SINE MIR 7 122 -86 473 232 134 73 chr6 4697524 4697639 -177717603 + MIR SINE MIR 2 109 -153 2422 69 3 7 chr6 4697639 4697945 -177717297 - AluY SINE Alu -6 305 1 473 232 134 73 chr6 4697945 4698075 -177717167 + MIR SINE MIR 109 262 0 260 320 8 25 chr6 4698149 4698271 -177716971 - MLT1K LTR MaLR 0 588 469 198 171 0 0 chr6 4698586 4698627 -177716615 + (CA)n Simple_repeat Simple_repeat 2 42 0 259 225 45 0 chr6 4699218 4699307 -177715935 + MIR SINE MIR 93 185 -77 2025 127 13 30 chr6 4699365 4699664 -177715578 + AluSx SINE Alu 1 294 -18 643 205 66 0 chr6 4699852 4700018 -177715224 - MIR SINE MIR -57 205 29 274 267 12 12 chr6 4701372 4701458 -177713784 + GA-rich Low_complexity Low_complexity 2 87 0 490 286 105 33 chr6 4701928 4702204 -177713038 - LTR16B LTR ERVL 0 464 169 320 266 115 9 chr6 4703004 4703117 -177712125 + MER96 DNA MER1_type? 1 125 -50 206 205 0 0 chr6 4704083 4704122 -177711120 + G-rich Low_complexity Low_complexity 1 39 0 476 263 21 21 chr6 4704181 4704367 -177710875 - MER5A DNA MER1_type -3 186 1 469 299 91 15 chr6 4704598 4704795 -177710447 + MIR SINE MIR 48 259 -3 704 258 154 75 chr6 4704820 4704891 -177710351 - MLT1F1 LTR MaLR 0 590 526 1720 174 7 17 chr6 4704891 4705189 -177710053 + AluJo SINE Alu 6 300 -12 704 258 154 75 chr6 4705189 4705664 -177709578 - MLT1F1 LTR MaLR -64 526 1 1106 138 39 86 chr6 4706281 4706513 -177708729 - AluJo SINE Alu -7 305 85 1826 155 32 45 chr6 4706709 4707089 -177708153 + THE1C LTR MaLR 1 375 0 1028 203 33 5 chr6 4707503 4707715 -177707527 + MER20 DNA MER1_type 1 218 -1 2200 101 0 3 chr6 4708384 4708670 -177706572 - AluSx SINE Alu -27 285 1 453 228 82 78 chr6 4708893 4709099 -177706143 - L1MC5 LINE L1 -74 7887 7681 2199 120 0 0 chr6 4709100 4709399 -177705843 + AluSx SINE Alu 1 299 -13 290 339 51 8 chr6 4710433 4710551 -177704691 + MIR SINE MIR 79 201 -61 * 444 311 179 16 chr6 4710549 4710912 -177704330 - L2 LINE L2 0 3313 2892 2202 125 110 15 chr6 4710943 4711334 -177703908 + MSTA LTR MaLR 1 428 0 1200 319 76 17 chr6 4711430 4712072 -177703170 - L2 LINE L2 -616 2698 2019 675 142 0 0 chr6 4712072 4712192 -177703050 + (GAATG)n Simple_repeat Simple_repeat 3 122 0 424 306 188 3 chr6 4712197 4712533 -177702709 - L2 LINE L2 -1304 2010 1613 301 242 57 16 chr6 4713150 4713274 -177701968 - HAL1b LINE L1 -7 1341 1213 382 164 0 0 chr6 4713671 4713726 -177701516 + AluJ/FLAM SINE Alu 19 73 -229 820 29 29 0 chr6 4713726 4713830 -177701412 - L1PA7 LINE L1 -100 6054 5948 1622 243 102 67 chr6 4713837 4713866 -177701376 + HAL1 LINE L1 114 141 -2366 2195 122 3 0 chr6 4713866 4714160 -177701082 - AluSx SINE Alu -17 295 1 1622 243 102 67 chr6 4714160 4714695 -177700547 + HAL1 LINE L1 141 656 -1851 1590 201 7 13 chr6 4714695 4714994 -177700248 + AluJo SINE Alu 1 297 -15 2241 99 0 43 chr6 4714996 4715320 -177699922 + AluSg SINE Alu 1 310 0 1622 243 102 67 chr6 4715320 4715487 -177699755 + HAL1 LINE L1 656 875 -1632 384 231 93 9 chr6 4715487 4715595 -177699647 + HsTC2 DNA Tc2 1 117 -1781 260 159 45 0 chr6 4715613 4715657 -177699585 + HsTC2 DNA Tc2 1245 1290 -608 1300 239 267 33 chr6 4715682 4716980 -177698262 + HAL1 LINE L1 874 2507 0 383 168 8 143 chr6 4717057 4717176 -177698066 - MER2 DNA MER2_type -1 344 242 1649 128 42 19 chr6 4717178 4717443 -177697799 + AluSx SINE Alu 35 305 -7 291 127 0 2 chr6 4717661 4717702 -177697540 - MSTA LTR MaLR 0 428 386 2331 102 3 0 chr6 4717702 4718005 -177697237 + AluSx SINE Alu 1 304 -8 27 29 0 0 chr6 4718421 4718455 -177696787 + AT_rich Low_complexity Low_complexity 1 34 0 236 299 0 0 chr6 4719389 4719456 -177695786 + (CTTA)n Simple_repeat Simple_repeat 3 69 0 21 0 0 0 chr6 4719768 4719789 -177695453 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 4722143 4722177 -177693065 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr6 4723258 4723289 -177691953 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr6 4723292 4723330 -177691912 + (TA)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chr6 4724365 4724387 -177690855 + (A)n Simple_repeat Simple_repeat 1 22 0 2035 139 0 16 chr6 4724407 4724717 -177690525 - AluSx SINE Alu -7 305 1 1844 114 158 24 chr6 4724718 4725059 -177690183 - MSTA LTR MaLR -40 388 2 218 324 88 0 chr6 4725151 4725321 -177689921 + L2 LINE L2 1859 2043 -1271 1979 182 14 0 chr6 4725511 4725868 -177689374 - L1PB4 LINE L1 -1 6155 5794 284 271 42 42 chr6 4726069 4726213 -177689029 + L2 LINE L2 3084 3227 -86 418 297 156 52 chr6 4726299 4726770 -177688472 + HAL1 LINE L1 882 1303 -1204 2236 117 0 0 chr6 4726770 4727068 -177688174 + AluSg SINE Alu 1 298 -12 418 297 156 52 chr6 4727068 4727519 -177687723 + HAL1 LINE L1 1303 1900 -607 479 181 85 11 chr6 4727607 4727701 -177687541 + AluJo SINE Alu 117 217 -95 243 338 68 7 chr6 4727948 4728096 -177687146 + HAL1b LINE L1 749 905 -443 315 324 34 34 chr6 4728193 4728369 -177686873 + HAL1 LINE L1 2226 2401 -106 1933 120 40 36 chr6 4728408 4728574 -177686668 - AluSx SINE Alu -10 302 133 2502 82 0 0 chr6 4728574 4728878 -177686364 - AluY SINE Alu -7 304 1 1933 120 40 36 chr6 4728878 4729012 -177686230 - AluSx SINE Alu -179 133 1 194 318 14 74 chr6 4729506 4729654 -177685588 - MIR SINE MIR -72 190 52 1472 131 25 4 chr6 4729728 4729972 -177685270 + L1MA9 LINE L1 5357 5605 -707 2241 92 3 55 chr6 4729976 4730302 -177684940 + AluSp SINE Alu 1 309 -4 2452 97 0 0 chr6 4730305 4730615 -177684627 + AluSg SINE Alu 1 310 0 1394 118 15 0 chr6 4730619 4730823 -177684419 + L1MA9 LINE L1 5953 6159 -153 * 1597 258 87 68 chr6 4730821 4731116 -177684126 + L1ME3A LINE L1 3586 3874 -2272 2478 77 0 0 chr6 4731116 4731413 -177683829 - AluY SINE Alu -14 297 1 1597 258 87 68 chr6 4731413 4731787 -177683455 + L1ME3A LINE L1 3874 4240 -1906 2542 111 22 8 chr6 4731787 4732157 -177683085 - THE1C LTR MaLR 0 375 1 1597 258 87 68 chr6 4732157 4732492 -177682750 + L1ME3A LINE L1 4240 4621 -1525 2382 100 0 13 chr6 4732492 4732802 -177682440 - AluSq SINE Alu -7 306 1 1597 258 87 68 chr6 4732802 4733035 -177682207 + L1ME3A LINE L1 4621 4848 -1298 508 288 141 13 chr6 4733059 4733651 -177681591 + L1ME3A LINE L1 4928 5579 -591 242 320 30 0 chr6 4734154 4734254 -177680988 + LTR67 LTR ERVL 431 533 -24 906 253 50 44 chr6 4734268 4734352 -177680890 + L1ME3A LINE L1 5581 5663 -507 4904 26 7 0 chr6 4734352 4734919 -177680323 + L1PA4 LINE L1 5585 6155 0 906 253 50 44 chr6 4734919 4735194 -177680048 + L1ME3A LINE L1 5663 5944 -226 365 132 0 13 chr6 4735213 4735289 -177679953 + (TA)n Simple_repeat Simple_repeat 1 75 0 492 257 93 93 chr6 4735593 4736001 -177679241 + L1MC4a LINE L1 5617 6024 -1784 302 188 0 0 chr6 4736005 4736053 -177679189 + MER66A LTR ERV1 290 337 -141 282 281 20 69 chr6 4736100 4736303 -177678939 + L1MC4a LINE L1 6054 6246 -1562 342 0 0 0 chr6 4738529 4738567 -177676675 + (CA)n Simple_repeat Simple_repeat 1 38 0 2118 107 4 0 chr6 4738569 4738839 -177676403 - AluSx SINE Alu -36 276 6 1512 132 107 80 chr6 4739092 4739419 -177675823 - THE1C LTR MaLR 0 375 36 2233 118 0 0 chr6 4739419 4739723 -177675519 + AluSx SINE Alu 1 304 -8 1512 132 107 80 chr6 4739723 4739760 -177675482 - THE1C LTR MaLR -339 36 1 282 366 31 9 chr6 4739924 4740151 -177675091 + L2 LINE L2 2170 2401 -913 1989 112 34 14 chr6 4741042 4741336 -177673906 + AluSx SINE Alu 1 300 -12 302 287 65 0 chr6 4741701 4741809 -177673433 - MIR SINE MIR -108 154 40 2182 88 17 10 chr6 4741809 4742103 -177673139 - AluSc SINE Alu -13 296 1 401 166 12 19 chr6 4742245 4742358 -177672884 - L1M3 LINE L1 -662 5509 5402 372 262 157 34 chr6 4742326 4742677 -177672565 - L1M4 LINE L1 -3090 3056 2663 * 297 0 0 0 chr6 4742677 4742710 -177672532 + (CA)n Simple_repeat Simple_repeat 2 34 0 1723 150 67 0 chr6 4742724 4742991 -177672251 - AluSx SINE Alu -27 285 1 1925 126 48 4 chr6 4743268 4743568 -177671674 + AluSx SINE Alu 1 312 0 2128 126 0 7 chr6 4743733 4744027 -177671215 - AluSg SINE Alu -18 292 1 206 328 76 0 chr6 4744264 4744395 -177670847 + L2 LINE L2 3173 3313 0 2241 122 0 3 chr6 4744470 4744774 -177670468 + AluSq SINE Alu 1 303 -10 470 179 0 9 chr6 4744829 4744935 -177670307 + GA-rich Low_complexity Low_complexity 4 108 0 259 233 222 0 chr6 4744948 4745038 -177670204 + MER5B DNA MER1_type 69 178 0 833 197 77 0 chr6 4745372 4745449 -177669793 + L1MA9 LINE L1 6075 6145 -167 270 0 0 0 chr6 4745449 4745479 -177669763 + (CA)n Simple_repeat Simple_repeat 1 30 0 833 197 77 0 chr6 4745479 4745584 -177669658 + L1MA9 LINE L1 6145 6271 -41 1875 174 7 0 chr6 4746314 4746624 -177668618 + AluJb SINE Alu 1 312 0 1154 176 0 0 chr6 4747440 4747633 -177667609 + AluJb SINE Alu 47 239 -73 2134 146 0 0 chr6 4748118 4748419 -177666823 - AluSx SINE Alu -11 301 1 222 322 46 59 chr6 4748594 4748746 -177666496 - MIR SINE MIR -111 151 2 439 297 104 16 chr6 4748842 4749034 -177666208 + MIR SINE MIR 40 248 -14 2517 37 10 7 chr6 4750498 4750793 -177664449 + AluY SINE Alu 1 296 -15 180 0 0 0 chr6 4751125 4751145 -177664097 + (T)n Simple_repeat Simple_repeat 1 20 0 404 181 0 14 chr6 4751694 4751766 -177663476 + AluJ/FLAM SINE Alu 14 84 -228 1434 180 49 29 chr6 4751959 4752265 -177662977 + AluJo SINE Alu 1 312 0 1703 164 35 0 chr6 4752371 4752657 -177662585 - AluJb SINE Alu -5 307 12 1877 161 27 0 chr6 4752811 4753109 -177662133 - AluSx SINE Alu -6 306 1 363 267 96 84 chr6 4753294 4753444 -177661798 - L1ME4a LINE L1 -222 5899 5752 2041 127 40 3 chr6 4753444 4753744 -177661498 - AluSq SINE Alu -2 311 1 363 267 96 84 chr6 4753744 4753915 -177661327 - L1ME4a LINE L1 -369 5752 5574 380 107 0 0 chr6 4755826 4755882 -177659360 - U6 snRNA snRNA -51 56 1 1869 154 10 3 chr6 4755913 4756212 -177659030 - AluSx SINE Alu -11 301 1 2106 111 27 13 chr6 4756386 4756684 -177658558 - AluSg SINE Alu -8 302 1 673 207 326 4 chr6 4756715 4756942 -177658300 + AluJo SINE Alu 1 300 -2 258 192 39 192 chr6 4757052 4757127 -177658115 - MER81 DNA DNA -4 110 62 1996 155 0 3 chr6 4757127 4757424 -177657818 + AluSx SINE Alu 2 297 -15 258 192 39 192 chr6 4757424 4757478 -177657764 - MER81 DNA DNA -52 62 1 1119 205 114 28 chr6 4757576 4757893 -177657349 - MER2 DNA MER2_type 0 344 1 584 233 93 16 chr6 4757910 4758103 -177657139 - LTR33 LTR ERVL -3 518 311 376 272 95 25 chr6 4758130 4758288 -177656954 - LTR33 LTR ERVL -343 178 10 1736 156 7 41 chr6 4758587 4758882 -177656360 - AluSx SINE Alu -27 285 1 4849 129 37 53 chr6 4759003 4760403 -177654839 - pTR5 LTR ERV1 0 2438 740 1442 153 69 42 chr6 4760662 4760787 -177654455 + AluJo SINE Alu 1 121 -191 2257 95 14 0 chr6 4760787 4761083 -177654159 + AluSg SINE Alu 1 300 -10 1442 153 69 42 chr6 4761083 4761245 -177653997 + AluJo SINE Alu 121 296 -16 196 232 61 12 chr6 4761397 4761479 -177653763 + MIR SINE MIR 112 197 -65 2014 151 0 0 chr6 4764167 4764458 -177650784 + AluJb SINE Alu 1 291 -21 2459 84 10 0 chr6 4764926 4765235 -177650007 + AluSq SINE Alu 1 312 -1 400 325 18 12 chr6 4765627 4765796 -177649446 - L3 LINE CR1 -520 1057 888 2138 102 0 75 chr6 4766046 4766368 -177648874 + AluSx SINE Alu 1 298 -14 1831 182 0 0 chr6 4766584 4766870 -177648372 + AluJo SINE Alu 1 286 -26 23 0 0 0 chr6 4766870 4766893 -177648349 + AT_rich Low_complexity Low_complexity 1 23 0 1573 173 3 40 chr6 4766905 4767205 -177648037 + AluJo SINE Alu 3 291 -21 2145 114 43 3 chr6 4768372 4768671 -177646571 - AluSx SINE Alu -1 311 1 207 297 0 14 chr6 4769180 4769254 -177645988 + G-rich Low_complexity Low_complexity 2 74 0 694 160 75 64 chr6 4769469 4769536 -177645706 - Charlie4a DNA MER1_type -1465 496 431 2407 82 3 13 chr6 4769536 4769841 -177645401 + AluSp SINE Alu 1 302 -11 694 160 75 64 chr6 4769841 4769960 -177645282 - Charlie4a DNA MER1_type -1530 431 308 1606 199 62 71 chr6 4769963 4770013 -177645229 - L1MA10 LINE L1 -7 6327 6278 2104 125 0 7 chr6 4770013 4770309 -177644933 + AluSq SINE Alu 1 294 -19 1606 199 62 71 chr6 4770309 4770725 -177644517 - L1MA10 LINE L1 -56 6278 5865 1108 189 84 0 chr6 4770725 4770963 -177644279 - Charlie4a DNA MER1_type -192 316 59 1923 83 117 0 chr6 4771902 4772168 -177643074 + AluSx SINE Alu 1 297 -15 1481 94 0 0 chr6 4772170 4772351 -177642891 - AluSc SINE Alu -123 186 6 395 300 93 17 chr6 4772355 4772592 -177642650 + L1MC4a LINE L1 5080 5334 -812 1765 144 0 11 chr6 4772653 4772916 -177642326 + AluSx SINE Alu 29 288 -24 784 311 82 26 chr6 4772939 4773411 -177641831 + L1MC4a LINE L1 5374 5872 -298 2380 84 3 0 chr6 4773411 4773711 -177641531 + AluSp SINE Alu 1 347 0 309 43 22 0 chr6 4773711 4773757 -177641485 + (TAAAA)n Simple_repeat Simple_repeat 4 170 0 2244 110 0 28 chr6 4773767 4774085 -177641157 + AluSq SINE Alu 1 309 -4 2331 89 7 3 chr6 4774203 4774506 -177640736 + AluSp SINE Alu 1 304 -9 1081 162 19 14 chr6 4774832 4775048 -177640194 + MER20 DNA MER1_type 1 217 -2 2330 108 0 0 chr6 4775321 4775618 -177639624 - AluSx SINE Alu -15 297 1 1289 274 84 32 chr6 4775867 4776341 -177638901 - MLT1J LTR MaLR -2 509 11 1717 153 38 51 chr6 4776610 4776924 -177638318 + AluJb SINE Alu 1 310 -2 1849 154 3 10 chr6 4778746 4779038 -177636204 + AluJo SINE Alu 4 293 -19 818 206 113 21 chr6 4779120 4779358 -177635884 - MIR SINE MIR -2 260 1 1809 141 17 23 chr6 4779492 4779791 -177635451 - AluJo SINE Alu -15 297 1 1039 79 14 36 chr6 4779986 4780125 -177635117 + AluSq/x SINE Alu 1 136 -176 231 284 77 26 chr6 4780294 4780449 -177634793 - L2 LINE L2 -213 3059 2897 2238 101 10 0 chr6 4780615 4780911 -177634331 + AluSg SINE Alu 1 299 -11 2251 114 0 0 chr6 4781558 4781855 -177633387 + AluSg SINE Alu 1 297 -13 340 296 40 66 chr6 4782416 4782568 -177632674 + L2 LINE L2 3125 3272 0 408 200 144 0 chr6 4782785 4782875 -177632367 + FLAM_C SINE Alu 1 103 -30 228 35 0 0 chr6 4783188 4783217 -177632025 + (CA)n Simple_repeat Simple_repeat 2 30 0 204 197 106 15 chr6 4783451 4783517 -177631725 - MIR3 SINE MIR -10 198 127 1019 69 30 13 chr6 4783813 4784050 -177631192 + (TGGA)n Simple_repeat Simple_repeat 1 241 0 361 232 84 0 chr6 4784338 4784433 -177630809 + MER94 DNA DNA 1 103 -31 776 177 0 0 chr6 4784589 4784713 -177630529 + FLAM_C SINE Alu 2 125 -18 26 0 0 0 chr6 4784716 4784742 -177630500 + AT_rich Low_complexity Low_complexity 1 26 0 818 158 0 0 chr6 4785009 4785136 -177630106 - AluJb SINE Alu -185 127 1 278 355 21 35 chr6 4785264 4785405 -177629837 + MIR3 SINE MIR 32 170 -38 357 24 0 0 chr6 4786275 4786317 -177628925 + (CA)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chr6 4786995 4787030 -177628212 + AT_rich Low_complexity Low_complexity 1 35 0 260 301 60 15 chr6 4787052 4787185 -177628057 + MIR SINE MIR 54 192 -70 2237 118 0 0 chr6 4787520 4787824 -177627418 + AluSx SINE Alu 1 304 -8 251 135 0 0 chr6 4787824 4787861 -177627381 - MSTA LTR MaLR -391 37 1 282 366 31 9 chr6 4788025 4788252 -177626990 + L2 LINE L2 2170 2401 -913 1989 112 34 14 chr6 4789143 4789437 -177625805 + AluSx SINE Alu 1 300 -12 302 287 65 0 chr6 4789802 4789910 -177625332 - MIR SINE MIR -108 154 40 2182 88 17 10 chr6 4789910 4790204 -177625038 - AluSc SINE Alu -13 296 1 401 166 12 19 chr6 4790346 4790459 -177624783 - L1M3 LINE L1 -662 5509 5402 300 275 91 30 chr6 4790427 4790725 -177624517 - L1M3 LINE L1 -3090 3056 2719 * 36 0 0 21 chr6 4790877 4790909 -177624333 + AT_rich Low_complexity Low_complexity 1 33 -13 2250 95 3 0 chr6 4790909 4791194 -177624048 - AluSx SINE Alu -26 286 1 36 0 0 21 chr6 4791194 4791208 -177624034 + AT_rich Low_complexity Low_complexity 33 46 0 686 195 0 0 chr6 4791208 4791326 -177623916 + FRAM SINE Alu 1 113 -63 2682 51 0 10 chr6 4791533 4791847 -177623395 - AluY SINE Alu 0 311 1 571 245 155 0 chr6 4791946 4792101 -177623141 + MER5A DNA MER1_type 11 189 0 189 0 0 0 chr6 4793529 4793550 -177621692 + (TG)n Simple_repeat Simple_repeat 2 22 0 426 94 0 0 chr6 4793552 4793616 -177621626 + (TAGG)n Simple_repeat Simple_repeat 4 67 0 1661 178 25 0 chr6 4793617 4793903 -177621339 - AluJb SINE Alu -19 293 1 915 119 0 30 chr6 4794709 4794843 -177620399 + FRAM SINE Alu 29 158 -18 180 0 0 0 chr6 4795717 4795737 -177619505 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2241 100 0 34 chr6 4795742 4796063 -177619179 - AluSq SINE Alu -3 310 1 260 301 60 15 chr6 4796398 4796531 -177618711 - MIR SINE MIR -70 192 54 28 29 0 0 chr6 4796553 4796588 -177618654 + AT_rich Low_complexity Low_complexity 1 35 0 357 24 0 0 chr6 4797266 4797308 -177617934 + (TG)n Simple_repeat Simple_repeat 2 43 0 278 355 21 35 chr6 4798178 4798319 -177616923 - MIR3 SINE MIR -38 170 32 818 158 0 0 chr6 4798447 4798574 -177616668 + AluJb SINE Alu 1 127 -185 2044 136 3 3 chr6 4798750 4799036 -177616206 + AluSx SINE Alu 1 286 -26 186 71 0 0 chr6 4799036 4799064 -177616178 + (TA)n Simple_repeat Simple_repeat 2 29 0 2012 121 7 10 chr6 4799072 4799362 -177615880 + AluSx SINE Alu 1 289 -23 28 61 0 0 chr6 4799534 4799583 -177615659 + AT_rich Low_complexity Low_complexity 1 49 0 2536 64 0 6 chr6 4799650 4799961 -177615281 - AluY SINE Alu -2 309 1 270 292 36 18 chr6 4800045 4800213 -177615029 - L1ME4a LINE L1 -226 5895 5725 2444 82 10 0 chr6 4800296 4800668 -177614574 + AluSq SINE Alu 5 379 0 2260 103 0 0 chr6 4802042 4802334 -177612908 - AluSg SINE Alu -18 292 1 226 254 111 0 chr6 4802461 4802524 -177612718 + MIR SINE MIR 123 192 -70 2111 283 124 41 chr6 4802943 4804353 -177610889 + L1MEd LINE L1 543 1835 -4294 2130 136 0 13 chr6 4804353 4804655 -177610587 + AluSx SINE Alu 1 298 -14 2111 283 124 41 chr6 4804655 4804971 -177610271 + L1MEd LINE L1 1835 2123 -4006 2286 123 0 0 chr6 4804971 4805280 -177609962 - AluSg SINE Alu -1 309 1 2111 283 124 41 chr6 4805280 4805733 -177609509 + L1MEd LINE L1 2123 2537 -3592 2071 131 7 7 chr6 4805733 4806038 -177609204 + AluSx SINE Alu 1 305 -7 2111 283 124 41 chr6 4806038 4806247 -177608995 + L1MEd LINE L1 2537 2727 -3402 2200 131 0 0 chr6 4806247 4806553 -177608689 - AluSx SINE Alu -3 309 4 2111 283 124 41 chr6 4806553 4806892 -177608350 + L1MEd LINE L1 2727 3036 -3093 2336 106 0 3 chr6 4806892 4807203 -177608039 - AluSq SINE Alu -3 310 1 2111 283 124 41 chr6 4807203 4807415 -177607827 + L1MEd LINE L1 3036 3229 -2900 1720 164 20 16 chr6 4807415 4807720 -177607522 + AluJb SINE Alu 1 306 -6 2111 283 124 41 chr6 4807720 4807957 -177607285 + L1MEd LINE L1 3229 3938 -2191 2068 122 0 0 chr6 4807985 4808263 -177606979 + AluSg SINE Alu 1 278 -32 267 140 0 0 chr6 4808265 4808315 -177606927 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 365 258 157 13 chr6 4808315 4808474 -177606768 + L1MEd LINE L1 3947 4128 -2001 4198 140 108 100 chr6 4808942 4809347 -177605895 + L1MC3 LINE L1 6688 7088 -697 231 276 46 0 chr6 4809347 4809434 -177605808 + MLT1F1 LTR MaLR 35 125 -442 4198 140 108 100 chr6 4809434 4810011 -177605231 + L1MC3 LINE L1 7088 7765 -20 2333 70 17 7 chr6 4810484 4810658 -177604584 - AluY SINE Alu -7 304 124 405 0 0 0 chr6 4810658 4810703 -177604539 + (TG)n Simple_repeat Simple_repeat 2 46 0 2333 70 17 7 chr6 4810703 4810829 -177604413 - AluY SINE Alu -187 124 1 305 313 157 0 chr6 4810855 4810970 -177604272 + L2 LINE L2 3134 3266 -6 304 197 0 0 chr6 4811153 4811214 -177604028 + MIR SINE MIR 181 241 -21 21 0 0 0 chr6 4811225 4811246 -177603996 + AT_rich Low_complexity Low_complexity 1 21 0 309 163 75 25 chr6 4811567 4811647 -177603595 + MER112 DNA MER1_type 1 84 -176 372 175 0 97 chr6 4811766 4811807 -177603435 - MER5A DNA MER1_type -81 108 65 2092 117 0 23 chr6 4811807 4812106 -177603136 - AluSx SINE Alu -20 292 1 372 175 0 97 chr6 4812106 4812178 -177603064 - MER5A DNA MER1_type -124 65 6 189 74 0 0 chr6 4812398 4812425 -177602817 + (TC)n Simple_repeat Simple_repeat 2 28 0 29 110 0 0 chr6 4816310 4816437 -177598805 + GC_rich Low_complexity Low_complexity 1 127 0 272 229 9 46 chr6 4816836 4816945 -177598297 + C-rich Low_complexity Low_complexity 3 107 0 188 33 0 33 chr6 4816972 4817002 -177598240 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 209 143 20 20 chr6 4817150 4817199 -177598043 + (CCCCG)n Simple_repeat Simple_repeat 3 51 0 22 0 0 0 chr6 4817291 4817313 -177597929 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 4817412 4817440 -177597802 + GC_rich Low_complexity Low_complexity 1 28 0 271 124 41 52 chr6 4817526 4817623 -177597619 + (CCCG)n Simple_repeat Simple_repeat 4 99 0 190 292 117 25 chr6 4818685 4818805 -177596437 - L2 LINE L2 -1 3312 3182 441 257 189 22 chr6 4819526 4819748 -177595494 + MIR SINE MIR 3 261 -1 189 310 0 52 chr6 4820151 4820209 -177595033 + L2 LINE L2 3203 3257 -15 1109 225 64 35 chr6 4820447 4820758 -177594484 - MER58B DNA MER1_type -21 320 1 1495 144 9 115 chr6 4820913 4821261 -177593981 - AluYa5 SINE Alu 0 311 1 510 281 81 64 chr6 4823860 4824110 -177591132 - L1MEd LINE L1 -4641 1669 1425 2110 133 0 7 chr6 4824110 4824411 -177590831 - AluSq SINE Alu -14 299 1 510 281 81 64 chr6 4824411 4824877 -177590365 - L1MEd LINE L1 -4885 1425 908 1936 144 73 12 chr6 4825315 4825417 -177589825 + MER7A DNA MER2_type 2 96 -2942 2648 112 20 0 chr6 4825417 4825774 -177589468 + THE1B LTR MaLR 1 364 0 1936 144 73 12 chr6 4825774 4825998 -177589244 + MER7A DNA MER2_type 96 346 0 2242 114 3 0 chr6 4828458 4828764 -177586478 - AluSx SINE Alu -5 307 1 1924 129 34 3 chr6 4828900 4829195 -177586047 + AluSx SINE Alu 1 304 -8 1759 170 7 0 chr6 4829766 4830066 -177585176 - AluJb SINE Alu -10 302 1 380 293 61 45 chr6 4832056 4832254 -177582988 + MARNA DNA Mariner 275 475 -111 2485 55 0 32 chr6 4832576 4832884 -177582358 - AluY SINE Alu -13 298 1 516 263 131 58 chr6 4832937 4833126 -177582116 - L1ME LINE L1 -840 5240 5066 2177 109 3 17 chr6 4833126 4833428 -177581814 - AluSx SINE Alu -14 298 1 516 263 131 58 chr6 4833428 4833931 -177581311 - L1ME LINE L1 -1014 5066 4497 229 262 0 83 chr6 4833931 4834015 -177581227 - L2 LINE L2 -59 3254 3178 2485 240 141 49 chr6 4834132 4835351 -177579891 - L2 LINE L2 -421 2893 1563 603 279 148 41 chr6 4835516 4836057 -177579185 - L1ME LINE L1 -1801 4279 3681 329 252 271 0 chr6 4836382 4836600 -177578642 - L1M4 LINE L1 -2906 3240 2964 1772 104 100 19 chr6 4836655 4836925 -177578317 - AluSx SINE Alu -20 292 1 22 0 0 0 chr6 4837058 4837080 -177578162 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr6 4838100 4838127 -177577115 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2390 194 55 30 chr6 4838127 4838652 -177576590 - L1MB7 LINE L1 -16 6168 5631 1852 197 0 0 chr6 4838656 4838965 -177576277 - AluJb SINE Alu -3 309 1 2402 264 135 36 chr6 4839295 4840136 -177575106 - L1ME LINE L1 -2406 3674 2918 1593 176 51 14 chr6 4840136 4840431 -177574811 - AluJb SINE Alu -6 306 1 2402 264 135 36 chr6 4840431 4842470 -177572772 - L1ME LINE L1 -3162 2918 278 225 283 19 66 chr6 4842575 4842681 -177572561 - L1ME LINE L1 -5610 460 360 1782 171 3 7 chr6 4842953 4843245 -177571997 + AluJo SINE Alu 6 296 -16 180 0 0 0 chr6 4844426 4844446 -177570796 + (T)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr6 4844608 4844645 -177570597 + AT_rich Low_complexity Low_complexity 1 37 0 2565 162 24 31 chr6 4846133 4846644 -177568598 - MLT2B1 LTR ERVL -8 512 6 4252 221 91 51 chr6 4847127 4847530 -177567712 - L1MC4a LINE L1 0 7808 7422 1520 218 17 57 chr6 4847530 4847933 -177567309 - MLT1B LTR MaLR 0 390 4 4252 221 91 51 chr6 4847933 4848284 -177566958 - L1MC4a LINE L1 -386 7422 7086 2056 137 0 9 chr6 4848284 4848599 -177566643 - AluJo SINE Alu 0 312 1 4252 221 91 51 chr6 4848599 4849230 -177566012 - L1MC4a LINE L1 -722 7086 6367 566 245 0 2 chr6 4849231 4849416 -177565826 + MER58A DNA MER1_type 6 223 -1 2588 218 53 30 chr6 4849424 4850159 -177565083 - L1MC4a LINE L1 -1434 6374 5623 1583 176 76 53 chr6 4851286 4851643 -177563599 - MLT1A1 LTR MaLR 0 365 1 242 163 23 0 chr6 4851741 4851784 -177563458 + MER69 DNA AcHobo 1 44 -133 896 160 37 102 chr6 4852298 4852542 -177562700 - AluJo SINE Alu -8 304 77 356 214 51 41 chr6 4852668 4852766 -177562476 + MER5A DNA MER1_type 14 112 -77 344 260 127 48 chr6 4852885 4853205 -177562037 - L1MC4a LINE L1 -494 5627 5538 * 559 265 88 89 chr6 4853202 4854154 -177561088 - L1MC4a LINE L1 -1331 4815 3865 1665 177 16 35 chr6 4854454 4854771 -177560471 - AluJb SINE Alu -1 311 1 1870 152 10 7 chr6 4855212 4855515 -177559727 - AluSx SINE Alu -8 304 1 201 175 0 0 chr6 4855899 4855939 -177559303 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 333 310 147 11 chr6 4856166 4856350 -177558892 - L1MC4a LINE L1 -485 5636 5428 222 91 0 0 chr6 4856366 4856399 -177558843 + (T)n Simple_repeat Simple_repeat 1 33 0 300 330 52 26 chr6 4856555 4856785 -177558457 - L1MC4a LINE L1 -1008 5138 4903 1854 155 36 7 chr6 4857178 4857481 -177557761 - AluSx SINE Alu 0 312 1 1820 160 7 0 chr6 4858667 4858981 -177556261 + AluJb SINE Alu 1 316 0 423 0 0 0 chr6 4859809 4859856 -177555386 + (TC)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr6 4859855 4859876 -177555366 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 1018 169 13 65 chr6 4860381 4860612 -177554630 + MER20 DNA MER1_type 1 219 0 1049 56 0 42 chr6 4861953 4862095 -177553147 - AluSg/x SINE Alu -1 311 176 2037 130 3 10 chr6 4862144 4862444 -177552798 + AluSx SINE Alu 1 298 -14 1644 154 6 91 chr6 4862660 4862990 -177552252 - AluJb SINE Alu -9 303 2 233 262 92 35 chr6 4864152 4864293 -177550949 - L1MB1 LINE L1 0 6168 6020 * 436 211 158 0 chr6 4864291 4864424 -177550818 - L1MB4 LINE L1 -12 6168 6015 * 3870 182 64 33 chr6 4864418 4865467 -177549775 - L1MB4 LINE L1 -11 6667 5590 423 170 41 109 chr6 4865462 4865567 -177549675 - L1MC4a LINE L1 -1433 4713 4619 * 2223 116 0 0 chr6 4865567 4865859 -177549383 - AluSx SINE Alu -16 296 5 423 170 41 109 chr6 4865859 4865900 -177549342 - L1MC4a LINE L1 -1527 4619 4577 1361 206 224 32 chr6 4865919 4866420 -177548822 - L1MB4 LINE L1 -1800 4844 4248 747 248 57 52 chr6 4866424 4866634 -177548608 - MER82 DNA MER2_type 0 653 443 381 303 6 46 chr6 4866680 4866813 -177548429 + MIR SINE MIR 31 164 -44 3851 213 118 72 chr6 4866909 4868351 -177546891 - L1MB4 LINE L1 -2849 3795 2420 2205 118 3 0 chr6 4868351 4868647 -177546595 - AluSx SINE Alu -15 297 1 3851 213 118 72 chr6 4868647 4868945 -177546297 - L1MB4 LINE L1 -4224 2420 2137 1198 100 6 18 chr6 4868945 4869115 -177546127 - FRAM SINE Alu -9 167 1 3851 213 118 72 chr6 4869115 4870093 -177545149 - L1MB4 LINE L1 -4507 2137 777 183 80 0 0 chr6 4870093 4870118 -177545124 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3851 213 118 72 chr6 4870118 4870293 -177544949 - L1MB4 LINE L1 -5867 777 611 338 280 77 33 chr6 4870593 4870775 -177544467 - L1MB4 LINE L1 -6335 207 18 230 314 0 14 chr6 4870977 4871047 -177544195 + MER113 DNA MER1_type? 452 520 -1 5190 21 0 9 chr6 4871291 4871865 -177543377 - L1PA3 LINE L1 -1 6154 5586 32443 35 2 1 chr6 4871865 4876923 -177538319 - L1PA3 LINE L1 -1087 5059 2 352 266 79 50 chr6 4877641 4877780 -177537462 + L2 LINE L2 3128 3270 -2 22 35 0 0 chr6 4878047 4878076 -177537166 + AT_rich Low_complexity Low_complexity 1 29 0 2318 89 0 19 chr6 4878141 4878457 -177536785 - AluSg SINE Alu 0 310 1 1627 201 0 13 chr6 4878462 4878770 -177536472 - AluJb SINE Alu -8 304 1 10689 178 30 5 chr6 4878852 4879386 -177535856 - L1PB1 LINE L1 0 6867 6348 2087 92 36 0 chr6 4879386 4879667 -177535575 - AluSg SINE Alu -19 291 1 10689 178 30 5 chr6 4879667 4881532 -177533710 - L1PB1 LINE L1 -519 6348 4350 205 49 0 49 chr6 4881532 4881573 -177533669 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 10689 178 30 5 chr6 4881573 4882649 -177532593 - L1PB1 LINE L1 -2517 4350 3303 51 0 0 0 chr6 4882649 4882700 -177532542 + AT_rich Low_complexity Low_complexity 1 51 0 276 99 64 41 chr6 4882700 4882872 -177532370 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 271 173 13 13 chr6 4882875 4882950 -177532292 + (TAA)n Simple_repeat Simple_repeat 1 75 0 8231 119 60 37 chr6 4882957 4884909 -177530333 - L1PB1 LINE L1 -3493 3369 1389 521 79 8 0 chr6 4884952 4885077 -177530165 - L1PB1 LINE L1 -5700 1163 995 1051 149 0 5 chr6 4885077 4885272 -177529970 - L1PB1 LINE L1 -6669 194 1 768 218 94 24 chr6 4885372 4885942 -177529300 + MER114 LTR ERV 1 648 0 180 0 0 0 chr6 4885984 4886004 -177529238 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1505 212 36 3 chr6 4886243 4886573 -177528669 - MER58B DNA MER1_type 0 341 1 297 232 0 0 chr6 4887507 4887563 -177527679 + MER94 DNA DNA 79 134 0 299 239 83 46 chr6 4887812 4887921 -177527321 - MER5A DNA MER1_type 0 189 77 185 333 31 23 chr6 4888835 4888964 -177526278 + L2 LINE L2 3183 3312 -1 364 254 132 54 chr6 4890428 4890633 -177524609 - L2 LINE L2 -18 3295 3075 227 194 78 108 chr6 4890648 4890777 -177524465 + MIR SINE MIR 57 133 -75 211 324 15 15 chr6 4890899 4890967 -177524275 - L2 LINE L2 -4 3268 3201 380 188 247 39 chr6 4891854 4892008 -177523234 + MIR SINE MIR 48 233 -29 304 345 39 0 chr6 4892729 4892961 -177522281 - L1MC4 LINE L1 -701 7341 7101 1050 89 16 0 chr6 4893008 4893316 -177521926 + (TTCC)n Simple_repeat Simple_repeat 1 313 0 330 295 20 13 chr6 4893434 4893488 -177521754 - L1MC4 LINE L1 -1037 7005 6953 1721 171 34 0 chr6 4893488 4893781 -177521461 - AluJo SINE Alu -9 303 1 330 295 20 13 chr6 4893781 4893875 -177521367 - L1MC4 LINE L1 -1089 6953 6856 556 276 45 78 chr6 4893905 4894148 -177521094 - MIR SINE MIR -15 247 13 246 156 0 0 chr6 4894163 4894208 -177521034 + CT-rich Low_complexity Low_complexity 6 50 0 948 142 11 80 chr6 4895979 4896155 -177519087 - AluJo SINE Alu -22 290 127 252 156 0 0 chr6 4896482 4896527 -177518715 + MER112 DNA MER1_type 205 249 -11 631 262 112 65 chr6 4896781 4897166 -177518076 - L2 LINE L2 -28 3285 2883 366 263 244 25 chr6 4897212 4897528 -177517714 - L2 LINE L2 -645 2669 2285 641 136 40 0 chr6 4897828 4897953 -177517289 - L1MB3 LINE L1 -1 6182 6053 224 317 59 54 chr6 4899074 4899295 -177515947 - MIR SINE MIR -33 229 8 728 226 74 43 chr6 4899405 4899635 -177515607 + MIR SINE MIR 16 252 -10 2582 64 0 0 chr6 4900582 4900893 -177514349 - AluY SINE Alu 0 311 1 295 80 0 20 chr6 4901154 4901204 -177514038 - MLT2A1 LTR ERVL -8 445 397 271 79 89 20 chr6 4901206 4901307 -177513935 + (TA)n Simple_repeat Simple_repeat 2 109 0 2397 101 40 18 chr6 4901338 4901733 -177513509 - MLT2A1 LTR ERVL -40 404 1 3106 170 5 4 chr6 4903488 4904047 -177511195 + L1PA16 LINE L1 5587 6146 -20 521 319 128 24 chr6 4904608 4905009 -177510233 + L1MCa LINE L1 1376 2051 -736 2511 107 6 8 chr6 4905199 4905555 -177509687 + THE1A LTR MaLR 1 355 0 2643 127 8 106 chr6 4905643 4906235 -177509007 + LTR10A LTR ERV1 12 545 -64 309 279 211 19 chr6 4906548 4906860 -177508382 + L1MCa LINE L1 2831 3202 -3224 402 274 135 61 chr6 4906965 4907188 -177508054 + L1MCa LINE L1 3406 3611 -2815 1131 168 25 0 chr6 4907188 4907391 -177507851 + MER6B DNA MER2_type 2 209 -1 402 274 135 61 chr6 4907391 4907626 -177507616 + L1MCa LINE L1 3611 3898 -2528 1603 245 98 14 chr6 4907904 4908456 -177506786 - L1M4 LINE L1 -1856 4788 4191 2532 244 72 73 chr6 4908499 4909781 -177505461 - L1M4 LINE L1 -2692 3952 2700 2248 124 0 0 chr6 4909781 4910088 -177505154 - AluSx SINE Alu -5 307 1 2532 244 72 73 chr6 4910088 4910733 -177504509 - L1M4 LINE L1 -3944 2700 2056 937 188 0 0 chr6 4910764 4910913 -177504329 - FRAM SINE Alu -19 157 9 1100 257 109 35 chr6 4910941 4911737 -177503505 - L1M4 LINE L1 -4732 1914 1076 391 167 0 0 chr6 4912064 4912130 -177503112 - Tigger4(Zombi) DNA MER2_type -2665 66 1 2043 121 13 3 chr6 4913074 4913372 -177501870 - AluSq SINE Alu -12 301 1 1742 255 98 5 chr6 4915269 4915915 -177499327 - L1ME2 LINE L1 -4 6160 5455 733 251 100 36 chr6 4915887 4916386 -177498856 - L1ME2 LINE L1 -1381 4765 4235 * 1324 204 78 78 chr6 4916655 4917410 -177497832 - L1ME2 LINE L1 -15 6218 5359 361 131 0 0 chr6 4917438 4917499 -177497743 + MLT1A1-int LTR MaLR 1662 1722 -13 1603 204 64 0 chr6 4917532 4917875 -177497367 + MLT1A1 LTR MaLR 1 365 0 1035 272 61 43 chr6 4917999 4918702 -177496540 - L1ME2 LINE L1 -968 5247 4532 * 1964 238 136 56 chr6 4918696 4920150 -177495092 - L1ME2 LINE L1 -2228 3987 2418 2439 91 0 3 chr6 4920245 4920552 -177494690 - AluSq SINE Alu -7 306 1 4914 159 62 19 chr6 4920558 4921666 -177493576 - L1MC1 LINE L1 -2 6331 5186 474 265 48 59 chr6 4921673 4922031 -177493211 - L1ME2 LINE L1 -3826 2389 2076 406 312 51 22 chr6 4922092 4922230 -177493012 + MER5A DNA MER1_type 33 174 -15 385 221 129 42 chr6 4922236 4922476 -177492766 - L1ME2 LINE L1 -4387 2009 1749 940 264 123 21 chr6 4922532 4922914 -177492328 + LTR40b LTR ERVL 1 421 -41 766 270 102 24 chr6 4922931 4923368 -177491874 + HERVL40 LTR ERVL 43 568 -4962 661 270 0 54 chr6 4923447 4923688 -177491554 + HERVL40 LTR ERVL 606 833 -4697 281 197 0 0 chr6 4924916 4924977 -177490265 + HERVL68 LTR ERVL 2830 2890 -147 * 870 251 42 0 chr6 4924966 4925205 -177490037 + HERVL68 LTR ERVL 5278 5526 -4 789 267 105 24 chr6 4925209 4925580 -177489662 + LTR40a LTR ERVL 1 401 -118 1285 222 4 33 chr6 4925582 4925690 -177489552 + Tigger7 DNA MER2_type 1 111 -622 1960 166 0 0 chr6 4925690 4925986 -177489256 - AluJo SINE Alu -16 296 1 1285 222 4 33 chr6 4925986 4926152 -177489090 + Tigger7 DNA MER2_type 111 267 -466 434 216 0 0 chr6 4926153 4926241 -177489001 + Tigger7 DNA MER2_type 2396 2483 -4 500 139 37 56 chr6 4926252 4926360 -177488882 + LTR40a LTR ERVL 410 515 -4 7995 211 81 25 chr6 4926428 4929762 -177485480 - L1MB8 LINE L1 0 6178 2658 793 213 54 76 chr6 4929897 4929915 -177485327 + MER58B DNA MER1_type 71 88 -2332 2432 73 3 3 chr6 4929915 4930215 -177485027 - AluSg SINE Alu -10 300 1 793 213 54 76 chr6 4930215 4930473 -177484769 + MER58B DNA MER1_type 88 341 0 2329 97 0 0 chr6 4934103 4934403 -177480839 + AluSx SINE Alu 1 300 -12 193 272 123 0 chr6 4934796 4934877 -177480365 - MIR3 SINE MIR -8 200 110 666 256 36 15 chr6 4935049 4935244 -177479998 + MER58 DNA MER1_type 2 200 -141 1175 105 7 0 chr6 4935289 4935441 -177479801 - AluSq SINE Alu -160 153 1 228 67 0 0 chr6 4935527 4935557 -177479685 + (TG)n Simple_repeat Simple_repeat 2 31 0 233 326 0 0 chr6 4935576 4935665 -177479577 + L1MC4 LINE L1 6615 6703 -1339 234 113 0 75 chr6 4935700 4935753 -177479489 + L1MC4 LINE L1 6653 6701 -1341 * 237 299 23 0 chr6 4935734 4935821 -177479421 + L1MC4 LINE L1 6615 6703 -1339 232 299 23 0 chr6 4935757 4935844 -177479398 - L1MC4 LINE L1 -1339 6703 6615 * 204 217 0 0 chr6 4935847 4935893 -177479349 + (TA)n Simple_repeat Simple_repeat 2 47 0 237 299 86 8 chr6 4936469 4936586 -177478656 + L2 LINE L2 3186 3311 -2 835 152 0 8 chr6 4937772 4937897 -177477345 + FLAM_C SINE Alu 1 124 -19 1869 83 8 12 chr6 4937955 4938209 -177477033 + AluY SINE Alu 43 295 -16 975 159 6 29 chr6 4938210 4938380 -177476862 + AluJo/FRAM SINE Alu 138 303 -9 1027 258 54 81 chr6 4939364 4939918 -177475324 - MER34 LTR ERV1 -3 539 1 474 179 36 27 chr6 4940437 4940549 -177474693 - L1MC4 LINE L1 -2 8040 7928 218 205 0 0 chr6 4940568 4940607 -177474635 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 465 66 0 0 chr6 4940907 4940968 -177474274 + (TA)n Simple_repeat Simple_repeat 2 62 0 260 250 62 0 chr6 4941002 4941066 -177474176 - U6 snRNA snRNA -1 106 39 220 254 112 52 chr6 4941675 4941809 -177473433 - MIR3 SINE MIR -62 146 5 347 283 143 56 chr6 4941854 4942140 -177473102 - MLT1K LTR MaLR -1 587 277 2239 92 10 26 chr6 4942254 4942559 -177472683 + AluSp SINE Alu 1 300 -13 406 196 27 9 chr6 4945919 4946031 -177469211 - L1MA4A LINE L1 -1 6302 6189 1517 157 19 74 chr6 4947487 4947811 -177467431 - AluJb SINE Alu -6 306 1 230 342 56 51 chr6 4949586 4949708 -177465534 + L2 LINE L2 2653 2773 -499 2136 102 3 16 chr6 4949708 4950011 -177465231 - AluY SINE Alu -12 299 1 230 342 56 51 chr6 4950011 4950259 -177464983 + L2 LINE L2 2773 3059 -213 2298 55 41 17 chr6 4950971 4951264 -177463978 - AluY SINE Alu -11 300 1 23 86 0 0 chr6 4951803 4951861 -177463381 + AT_rich Low_complexity Low_complexity 1 58 0 690 241 76 101 chr6 4951908 4952382 -177462860 - LTR37B LTR ERV1 -2 466 5 1825 156 138 31 chr6 4952736 4953121 -177462121 - MSTC LTR MaLR -2 426 1 28 0 0 0 chr6 4953392 4953420 -177461822 + AT_rich Low_complexity Low_complexity 1 28 0 935 206 57 0 chr6 4953827 4954036 -177461206 - MER58A DNA MER1_type -1 223 3 331 192 111 134 chr6 4954112 4954284 -177460958 - L1MCc LINE L1 -5396 1027 860 373 335 78 9 chr6 4954538 4954768 -177460474 - L1MCc LINE L1 -6091 332 87 5142 138 22 23 chr6 4955520 4956393 -177458849 + MER4D LTR ERV1 1 872 0 1027 154 104 36 chr6 4959544 4959764 -177455478 - MER46A DNA MER2_type 0 236 2 2073 209 112 6 chr6 4959950 4960485 -177454757 + L1MB4 LINE L1 5589 6180 0 1977 132 11 0 chr6 4960774 4961055 -177454187 - AluSx SINE Alu -28 284 1 213 39 0 0 chr6 4961135 4961161 -177454081 + (TG)n Simple_repeat Simple_repeat 1 26 0 208 204 0 0 chr6 4961955 4961999 -177453243 - L2 LINE L2 -7 3306 3263 4044 135 67 21 chr6 4963098 4963845 -177451397 - L1MA5 LINE L1 -3 6297 5517 1834 35 0 31 chr6 4963845 4964071 -177451171 + AluY SINE Alu 92 310 -1 194 281 18 0 chr6 4964091 4964148 -177451094 + MER5B DNA MER1_type 121 178 0 2387 50 10 17 chr6 4965539 4965836 -177449406 - AluY SINE Alu 0 311 17 392 242 144 70 chr6 4967142 4967427 -177447815 - L1ME4a LINE L1 -270 5851 5546 291 54 0 0 chr6 4967563 4967600 -177447642 + (TG)n Simple_repeat Simple_repeat 2 38 0 1677 118 126 16 chr6 4967601 4967855 -177447387 - AluSx SINE Alu -26 286 5 195 42 0 0 chr6 4968392 4968416 -177446826 + (TG)n Simple_repeat Simple_repeat 1 24 0 767 284 119 33 chr6 4969146 4969633 -177445609 - L1MEc LINE L1 -4559 1658 1108 354 45 0 0 chr6 4969633 4969677 -177445565 + (CA)n Simple_repeat Simple_repeat 2 45 0 767 284 119 33 chr6 4969677 4969794 -177445448 - L1MEc LINE L1 -5109 1108 1002 1415 288 69 47 chr6 4969838 4970789 -177444453 - L1MEc LINE L1 -5381 1015 44 207 292 191 0 chr6 4971204 4971293 -177443949 + MIR3 SINE MIR 75 180 -28 505 319 98 25 chr6 4971297 4971654 -177443588 - L2 LINE L2 -20 3293 2911 1543 201 25 38 chr6 4972293 4972661 -177442581 - MLT1A1 LTR MaLR -2 363 1 26 30 0 0 chr6 4974457 4974490 -177440752 + AT_rich Low_complexity Low_complexity 1 33 0 191 372 26 0 chr6 4976652 4976730 -177438512 - MIR SINE MIR -122 140 61 863 128 0 0 chr6 4977277 4977402 -177437840 + FLAM_C SINE Alu 1 125 -18 1476 194 3 7 chr6 4977414 4977708 -177437534 + AluJo SINE Alu 1 293 -19 186 156 0 0 chr6 4978411 4978456 -177436786 + T-rich Low_complexity Low_complexity 1 45 0 1365 105 35 18 chr6 4978653 4978882 -177436360 - L1MA8 LINE L1 -5 6286 6054 22 0 0 0 chr6 4984169 4984191 -177431051 + AT_rich Low_complexity Low_complexity 1 22 0 435 223 116 0 chr6 4984672 4984793 -177430449 - LTR16A LTR ERVL 0 450 316 289 280 80 13 chr6 4984836 4984986 -177430256 - LTR16A LTR ERVL -290 160 1 1539 240 109 46 chr6 4985081 4985730 -177429512 + L1MC4a LINE L1 7106 7802 -6 297 308 25 25 chr6 4986431 4986551 -177428691 - HERV16 LTR ERVL -1450 4314 4195 462 281 62 0 chr6 4987292 4987502 -177427740 - HERV16 LTR ERVL -3880 1116 894 227 139 23 0 chr6 4988147 4988190 -177427052 - LTR16A LTR ERVL -83 367 324 361 176 63 142 chr6 4988947 4989152 -177426090 + MER20 DNA MER1_type 31 219 0 2187 47 0 14 chr6 4991074 4991353 -177423889 + AluY SINE Alu 25 299 -12 1823 133 0 4 chr6 4993176 4993455 -177421787 - AluSx SINE Alu -16 296 19 2058 110 0 0 chr6 4994014 4994306 -177420936 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 4994310 4994332 -177420910 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 4995923 4995951 -177419291 + AT_rich Low_complexity Low_complexity 1 28 0 260 259 126 44 chr6 4996780 4996915 -177418327 - MIR SINE MIR -41 221 76 499 261 113 53 chr6 4997197 4997515 -177417727 + L1ME4a LINE L1 5490 5826 -295 25 65 0 0 chr6 4998358 4998404 -177416838 + AT_rich Low_complexity Low_complexity 1 46 0 369 228 55 39 chr6 4998859 4998986 -177416256 - MIR3 SINE MIR -66 142 14 3782 237 64 19 chr6 4999639 5000818 -177414424 + L1M4 LINE L1 2570 3800 -2346 539 176 0 0 chr6 5000818 5000909 -177414333 + AluJ/FRAM SINE Alu 217 307 -5 3089 160 52 86 chr6 5000909 5001710 -177413532 + L1MB7 LINE L1 5392 6165 -19 406 287 63 33 chr6 5001747 5002248 -177412994 + L1MEc LINE L1 2102 2583 -3632 473 115 13 0 chr6 5002250 5002328 -177412914 + (GGA)n Simple_repeat Simple_repeat 3 81 0 804 263 251 49 chr6 5002339 5002825 -177412417 + MLT1E LTR MaLR 10 593 0 447 52 0 0 chr6 5002856 5002914 -177412328 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 333 330 0 9 chr6 5003122 5003231 -177412011 - MIR SINE MIR -98 164 57 2547 58 0 0 chr6 5003340 5003648 -177411594 - AluY SINE Alu -3 308 1 1728 139 0 35 chr6 5004253 5004541 -177410701 + AluJb SINE Alu 1 278 -34 2304 70 0 0 chr6 5004719 5005017 -177410225 - AluY SINE Alu -9 302 5 269 270 14 0 chr6 5006062 5006136 -177409106 + (TG)n Simple_repeat Simple_repeat 1 75 0 608 248 56 47 chr6 5006155 5006369 -177408873 - L1ME1 LINE L1 -5 6161 5946 310 278 31 52 chr6 5007459 5007556 -177407686 + L1M4 LINE L1 5248 5342 -804 480 195 16 47 chr6 5007556 5007638 -177407604 + L1MB3 LINE L1 6058 6136 -47 768 179 0 8 chr6 5007638 5007772 -177407470 + FLAM_A SINE Alu 1 133 0 480 195 16 47 chr6 5007772 5007817 -177407425 + L1MB3 LINE L1 6136 6181 -2 23 54 0 0 chr6 5007817 5007854 -177407388 + AT_rich Low_complexity Low_complexity 1 37 0 2032 249 104 18 chr6 5007870 5008267 -177406975 + L1ME3A LINE L1 5290 5651 -519 1648 152 39 7 chr6 5008267 5008550 -177406692 + AluJo SINE Alu 1 292 -20 2032 249 104 18 chr6 5008550 5008938 -177406304 + L1ME3A LINE L1 5651 6152 -18 315 0 0 0 chr6 5008938 5008973 -177406269 + (TC)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chr6 5008972 5009001 -177406241 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 2083 115 0 0 chr6 5009001 5009297 -177405945 - AluSg SINE Alu -14 296 1 1800 158 0 0 chr6 5009353 5009631 -177405611 - AluSx SINE Alu -34 278 1 1767 174 0 0 chr6 5009666 5009965 -177405277 + AluSx SINE Alu 1 299 -13 2179 156 5 22 chr6 5010596 5010967 -177404275 - MLT1A1 LTR MaLR 0 365 1 652 242 27 13 chr6 5011037 5011186 -177404056 + MIR SINE MIR 84 234 -28 195 42 0 0 chr6 5011222 5011246 -177403996 + (ATG)n Simple_repeat Simple_repeat 3 26 0 330 302 12 0 chr6 5011274 5011360 -177403882 - L2 LINE L2 -189 3083 2997 237 65 0 0 chr6 5011378 5011409 -177403833 + (A)n Simple_repeat Simple_repeat 1 31 0 195 146 55 109 chr6 5011549 5011604 -177403638 - L3 LINE CR1 -1090 487 436 1000 156 22 11 chr6 5011971 5012151 -177403091 - MLT1B LTR MaLR -1 389 208 303 229 14 0 chr6 5012195 5012265 -177402977 + L1ME3A LINE L1 6031 6101 -69 1289 156 100 26 chr6 5012265 5012339 -177402903 - MLT1B LTR MaLR -101 289 222 294 29 0 0 chr6 5012339 5012374 -177402868 + (TA)n Simple_repeat Simple_repeat 2 36 0 1563 108 0 0 chr6 5012374 5012588 -177402654 - AluSg/x SINE Alu -27 285 72 1289 156 100 26 chr6 5012588 5012781 -177402461 - MLT1B LTR MaLR -167 223 1 1112 181 45 0 chr6 5013404 5013625 -177401617 + L1MB3 LINE L1 5915 6145 -38 1074 159 125 4 chr6 5013630 5013862 -177401380 + AluJb SINE Alu 40 299 -13 2118 102 3 3 chr6 5013923 5014216 -177401026 + AluSx SINE Alu 1 293 -19 5427 103 1 5 chr6 5016447 5017217 -177398025 - L1PB2 LINE L1 0 6151 5385 1271 67 0 0 chr6 5017217 5017382 -177397860 - AluY SINE Alu 0 311 147 6386 184 7 16 chr6 5017382 5018737 -177396505 - L1PB2 LINE L1 -745 5401 4059 265 281 45 11 chr6 5019137 5019226 -177396016 + MIR SINE MIR 155 246 -16 423 38 0 0 chr6 5019446 5019499 -177395743 + (TC)n Simple_repeat Simple_repeat 1 53 0 216 0 0 0 chr6 5019498 5019522 -177395720 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 696 172 15 1 chr6 5019834 5019977 -177395265 + L1 LINE L1 3607 3756 -2390 3110 147 8 0 chr6 5020488 5020972 -177394270 + L1 LINE L1 3742 4229 -1917 272 259 0 0 chr6 5020991 5021049 -177394193 - AluSc SINE Alu -108 191 134 2261 103 3 0 chr6 5021055 5021365 -177393877 - AluSx SINE Alu -1 311 1 740 118 118 33 chr6 5021368 5021494 -177393748 - L1MB4 LINE L1 -213 5967 5824 2901 168 75 51 chr6 5021494 5022204 -177393038 - LTR8A LTR ERV1 0 727 1 740 118 118 33 chr6 5022204 5022230 -177393012 - L1MB4 LINE L1 -356 5824 5802 974 162 17 17 chr6 5022238 5022411 -177392831 + AluJo SINE Alu 85 257 -55 752 148 0 0 chr6 5022414 5022529 -177392713 + AluJb SINE Alu 198 312 0 401 353 77 23 chr6 5022536 5022641 -177392601 + MIR SINE MIR 30 128 -134 1958 216 59 22 chr6 5022641 5023182 -177392060 - MER34B LTR ERV1 0 565 5 401 353 77 23 chr6 5023182 5023297 -177391945 + MIR SINE MIR 128 262 0 2240 82 0 3 chr6 5023668 5023962 -177391280 - AluSc SINE Alu -16 293 1 2380 78 0 0 chr6 5025335 5025643 -177389599 - AluY SINE Alu -3 308 1 3594 163 123 101 chr6 5026356 5026784 -177388458 + L1MC3 LINE L1 6687 7104 -681 244 279 0 25 chr6 5026784 5026863 -177388379 + MLT1F1 LTR MaLR 45 121 -446 3594 163 123 101 chr6 5026863 5027347 -177387895 + L1MC3 LINE L1 7104 7705 -80 279 0 0 0 chr6 5027347 5027378 -177387864 + (TG)n Simple_repeat Simple_repeat 2 32 0 3594 163 123 101 chr6 5027378 5027448 -177387794 + L1MC3 LINE L1 7705 7772 -13 1846 166 0 20 chr6 5027449 5027745 -177387497 - AluJo SINE Alu -22 290 1 1431 212 42 31 chr6 5027901 5028260 -177386982 - MLT1A2 LTR MaLR -11 363 1 4401 195 45 57 chr6 5029108 5030204 -177385038 - L1MD2 LINE L1 -22 6320 5238 4441 229 93 40 chr6 5030204 5030396 -177384846 - L1MD2 LINE L1 -1332 4797 4617 189 0 0 0 chr6 5030396 5030417 -177384825 + (CA)n Simple_repeat Simple_repeat 2 22 0 4441 229 93 40 chr6 5030417 5031443 -177383799 - L1MD2 LINE L1 -1512 4617 3467 1657 189 14 0 chr6 5031443 5031728 -177383514 - AluJo SINE Alu -23 289 1 4441 229 93 40 chr6 5031728 5032162 -177383080 - L1MD2 LINE L1 -2662 3467 3057 588 203 74 0 chr6 5032149 5032297 -177382945 - L1MD2 LINE L1 -3302 2827 2669 * 799 251 38 13 chr6 5032418 5032653 -177382589 - L1MD2 LINE L1 -3450 2679 2439 2429 234 105 21 chr6 5032657 5032691 -177382551 - L1MD2 LINE L1 -3876 2434 2404 2251 107 117 35 chr6 5032691 5033003 -177382239 + MSTA LTR MaLR 1 353 -75 1766 137 20 93 chr6 5033003 5033346 -177381896 + AluYb8 SINE Alu 1 318 0 2251 107 117 35 chr6 5033346 5033427 -177381815 + MSTA LTR MaLR 353 426 -2 2429 234 105 21 chr6 5033427 5034205 -177381037 - L1MD2 LINE L1 -3906 2404 1554 351 239 104 33 chr6 5034199 5034485 -177380757 - L1MD2 LINE L1 -5088 1046 725 * 304 287 84 72 chr6 5034528 5034887 -177380355 - L1MD2 LINE L1 -5487 632 270 2280 23 0 0 chr6 5035089 5035351 -177379891 + L1PA4 LINE L1 5891 6152 -3 250 262 285 12 chr6 5035493 5035665 -177379577 + MIR SINE MIR 19 237 -25 22 0 0 0 chr6 5036004 5036026 -177379216 + AT_rich Low_complexity Low_complexity 1 22 0 1714 197 58 42 chr6 5037810 5038091 -177377151 + LTR40a LTR ERVL 82 374 -145 3279 151 30 0 chr6 5038091 5038590 -177376652 + MLT2B3 LTR ERVL 1 519 -35 261 0 0 0 chr6 5038590 5038619 -177376623 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 3279 151 30 0 chr6 5038619 5038657 -177376585 + MLT2B3 LTR ERVL 519 554 0 1714 197 58 42 chr6 5038657 5038806 -177376436 + LTR40a LTR ERVL 374 519 0 21 0 0 0 chr6 5039524 5039545 -177375697 + AT_rich Low_complexity Low_complexity 1 21 0 2128 93 0 0 chr6 5040236 5040506 -177374736 - AluSc SINE Alu -4 305 36 2242 88 10 3 chr6 5041138 5041432 -177373810 - AluSx SINE Alu -16 296 1 281 365 0 0 chr6 5041755 5041925 -177373317 + (CAAG)n Simple_repeat Simple_repeat 1 170 0 436 220 136 0 chr6 5042124 5042242 -177373000 + MIR SINE MIR 97 230 -32 2662 33 3 0 chr6 5044011 5044318 -177370924 + AluY SINE Alu 1 308 -3 23 78 0 0 chr6 5044694 5044745 -177370497 + GC_rich Low_complexity Low_complexity 1 51 0 1095 147 101 150 chr6 5045999 5046305 -177368937 + AluJo SINE Alu 2 292 -10 2207 105 7 3 chr6 5046359 5046654 -177368588 + AluSx SINE Alu 1 296 -16 600 298 31 28 chr6 5047278 5047600 -177367642 + L2 LINE L2 2454 2776 -538 230 261 14 14 chr6 5047931 5048000 -177367242 + L1P LINE L1 2749 2817 -3329 2485 83 0 13 chr6 5048017 5048330 -177366912 + AluSc SINE Alu 1 309 0 2215 109 0 0 chr6 5048822 5049139 -177366103 + AluSx SINE Alu 1 317 0 1937 161 73 3 chr6 5049145 5049486 -177365756 + MLT1A1 LTR MaLR 1 365 0 1964 151 3 7 chr6 5049666 5049957 -177365285 + AluJo SINE Alu 1 290 -22 199 276 143 9 chr6 5050332 5050437 -177364805 - MIR SINE MIR -11 251 133 895 136 11 68 chr6 5050629 5050805 -177364437 - AluJb SINE Alu -18 294 129 1659 165 81 9 chr6 5051008 5051134 -177364108 - L1MB8 LINE L1 0 6178 6063 1702 125 42 42 chr6 5051134 5051422 -177363820 - AluJo SINE Alu -18 294 7 1659 165 81 9 chr6 5051422 5051640 -177363602 - L1MB8 LINE L1 -115 6063 5809 2101 129 0 0 chr6 5051712 5051991 -177363251 - AluSg SINE Alu -19 291 13 529 107 0 0 chr6 5052097 5052181 -177363061 - Alu SINE Alu 0 310 227 225 0 0 0 chr6 5052789 5052814 -177362428 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 758 142 0 0 chr6 5052828 5052948 -177362294 + L1MB2 LINE L1 6012 6131 -40 1469 152 9 4 chr6 5052949 5053179 -177362063 + AluJb SINE Alu 1 231 -81 478 104 30 0 chr6 5053211 5053278 -177361964 + AluJb SINE Alu 224 292 -20 273 47 116 0 chr6 5053280 5053323 -177361919 + L1MB2 LINE L1 6122 6169 -2 2060 153 3 0 chr6 5054112 5054407 -177360835 - AluJb SINE Alu -16 296 1 1752 159 33 0 chr6 5054683 5054954 -177360288 - AluJb SINE Alu -30 282 3 1798 234 121 10 chr6 5055210 5055697 -177359545 - MLT1H LTR MaLR 0 549 9 844 210 17 6 chr6 5056383 5056559 -177358683 + MER5B DNA MER1_type 1 178 0 2551 231 83 11 chr6 5057009 5057844 -177357398 - L1 LINE L1 -2478 3668 2774 1883 142 31 14 chr6 5057853 5058141 -177357101 - AluSx SINE Alu -19 293 1 489 70 28 28 chr6 5058145 5058216 -177357026 - Charlie1 DNA MER1_type -2011 750 680 18607 125 22 56 chr6 5058436 5061750 -177353492 - L1P LINE L1 -2934 3212 12 707 251 97 9 chr6 5061763 5062173 -177353069 - L1ME LINE L1 -678 5486 5045 955 143 0 0 chr6 5062309 5062442 -177352800 - FLAM_C SINE Alu -10 133 1 1592 179 98 29 chr6 5062445 5062701 -177352541 - L1MA4 LINE L1 -254 6046 5809 252 0 0 0 chr6 5062701 5062729 -177352513 + (TG)n Simple_repeat Simple_repeat 2 29 0 1592 179 98 29 chr6 5062729 5062762 -177352480 - L1MA4 LINE L1 -491 5809 5780 1697 149 0 0 chr6 5062762 5063004 -177352238 - AluSx SINE Alu -70 242 1 1592 179 98 29 chr6 5063004 5063092 -177352150 - L1MA4 LINE L1 -520 5780 5642 1524 190 104 41 chr6 5063095 5063168 -177352074 - HERVL74 LTR ERVL -4071 1614 1547 1902 142 0 23 chr6 5063168 5063495 -177351747 - AluSx SINE Alu 0 312 1 1524 190 104 41 chr6 5063495 5063836 -177351406 - HERVL74 LTR ERVL -4138 1547 1174 24 0 0 0 chr6 5063836 5063860 -177351382 + AT_rich Low_complexity Low_complexity 1 24 0 1548 158 17 45 chr6 5064108 5064430 -177350812 - AluJb SINE Alu 0 315 2 1955 135 7 4 chr6 5065801 5066082 -177349160 + AluJo SINE Alu 1 282 -30 241 156 16 16 chr6 5066087 5066151 -177349091 + GA-rich Low_complexity Low_complexity 2 65 0 200 250 0 59 chr6 5067766 5067834 -177347408 + MIR3 SINE MIR 114 177 -31 2082 72 7 65 chr6 5067853 5068057 -177347185 - AluSx SINE Alu 0 323 142 2093 129 0 19 chr6 5068057 5068375 -177346867 - AluSx SINE Alu 0 312 1 2082 72 7 65 chr6 5068375 5068502 -177346740 - AluSx SINE Alu -181 142 9 211 316 0 42 chr6 5068985 5069080 -177346162 - L2 LINE L2 -533 2781 2691 2165 100 3 7 chr6 5069101 5069390 -177345852 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr6 5069390 5069415 -177345827 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 257 111 0 0 chr6 5069415 5069451 -177345791 + Alu SINE Alu 253 288 -14 306 73 0 0 chr6 5069451 5069492 -177345750 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2519 146 16 81 chr6 5069587 5069637 -177345605 + L1MB7 LINE L1 5647 5699 -485 1947 188 14 3 chr6 5069637 5069998 -177345244 + MLT1A1 LTR MaLR 1 365 0 2519 146 16 81 chr6 5069998 5070502 -177344740 + L1MB7 LINE L1 5699 6165 -19 1500 181 28 11 chr6 5070536 5070823 -177344419 + AluJo SINE Alu 15 306 -6 181 336 105 14 chr6 5070840 5070983 -177344259 - L2 LINE L2 -711 2603 2448 320 317 19 0 chr6 5071766 5071870 -177343372 + MER3 DNA MER1_type 1 106 -103 912 144 139 16 chr6 5072407 5072601 -177342641 + MER20 DNA MER1_type 2 219 0 212 273 18 109 chr6 5073654 5073764 -177341478 + MIR3 SINE MIR 97 196 -12 283 244 12 12 chr6 5073816 5073902 -177341340 + CT-rich Low_complexity Low_complexity 2 87 0 205 217 116 74 chr6 5074465 5074654 -177340588 + L2 LINE L2 2555 2751 -563 1980 230 23 7 chr6 5074726 5075169 -177340073 - MER82 DNA MER2_type 0 653 204 2437 141 53 2 chr6 5075302 5075713 -177339529 + MSTB1 LTR MaLR 1 432 0 270 0 0 0 chr6 5075721 5075751 -177339491 + (T)n Simple_repeat Simple_repeat 1 30 0 544 262 28 14 chr6 5076065 5076206 -177339036 - MER82 DNA MER2_type -510 143 1 263 106 43 0 chr6 5076510 5076557 -177338685 + CT-rich Low_complexity Low_complexity 3 51 0 218 184 0 0 chr6 5076703 5076741 -177338501 + (TATG)n Simple_repeat Simple_repeat 3 40 0 188 290 48 0 chr6 5076846 5076908 -177338334 + L2 LINE L2 3239 3303 -10 519 237 9 0 chr6 5078255 5078369 -177336873 - L2 LINE L2 -3 3310 3196 693 279 44 24 chr6 5078688 5079097 -177336145 + L1M4 LINE L1 4596 5012 -1134 1299 125 36 10 chr6 5079097 5079289 -177335953 + AluJo SINE Alu 86 282 -30 453 115 0 0 chr6 5079294 5079381 -177335861 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 970 128 0 0 chr6 5079405 5079538 -177335704 + FLAM_C SINE Alu 1 133 0 1251 153 8 16 chr6 5079538 5079780 -177335462 + L1MA4 LINE L1 6055 6294 -6 676 217 31 25 chr6 5079781 5079942 -177335300 + HERVL74 LTR ERVL 1610 1771 -3914 1101 111 6 19 chr6 5080001 5080163 -177335079 + AluSg/x SINE Alu 132 291 -18 1386 194 23 0 chr6 5081320 5081578 -177333664 + HERVL74 LTR ERVL 1765 2028 -3657 * 2387 194 52 61 chr6 5081566 5082219 -177333023 + HERVL74 LTR ERVL 4615 5261 -424 845 250 23 5 chr6 5082249 5082465 -177332777 + HERVL74 LTR ERVL 5376 5595 -90 1890 158 105 3 chr6 5082692 5083065 -177332177 + MER74A LTR ERVL 121 531 -27 2415 86 0 6 chr6 5083098 5083413 -177331829 - AluSq SINE Alu 0 313 1 294 211 0 0 chr6 5084059 5084111 -177331131 - MLT1H1 LTR MaLR -3 552 501 2460 156 10 2 chr6 5084111 5084528 -177330714 + L1MB3 LINE L1 5659 6078 -105 772 229 70 111 chr6 5085105 5085135 -177330107 - MLT1H1 LTR MaLR -37 518 488 2334 59 0 0 chr6 5085135 5085406 -177329836 - AluY SINE Alu -18 293 23 772 229 70 111 chr6 5085406 5085794 -177329448 - MLT1H1 LTR MaLR -67 488 106 1919 150 0 7 chr6 5085794 5086087 -177329155 + AluJb SINE Alu 5 295 -17 772 229 70 111 chr6 5086087 5086189 -177329053 - MLT1H1 LTR MaLR -449 106 1 428 247 0 22 chr6 5086265 5086354 -177328888 - MER81 DNA DNA -27 87 1 450 0 0 0 chr6 5087273 5087323 -177327919 + (TG)n Simple_repeat Simple_repeat 2 51 0 1200 157 47 120 chr6 5087327 5087626 -177327616 - AluJo SINE Alu -35 277 1 211 250 11 91 chr6 5088525 5088613 -177326629 + MIR SINE MIR 92 144 -64 2245 119 0 0 chr6 5088661 5088956 -177326286 - AluSg SINE Alu -15 295 1 8893 161 122 33 chr6 5089053 5090661 -177324581 + L1M4c LINE L1 31 1844 -4540 2203 143 41 48 chr6 5090661 5091096 -177324146 - MSTB1 LTR MaLR 0 432 1 8893 161 122 33 chr6 5091096 5091446 -177323796 + L1M4c LINE L1 1844 2162 -4222 745 183 0 29 chr6 5091449 5091586 -177323656 - FLAM_C SINE Alu 0 133 1 729 101 36 36 chr6 5091615 5091754 -177323488 + L1MB3 LINE L1 6044 6182 -1 220 277 24 12 chr6 5092388 5092471 -177322771 + GA-rich Low_complexity Low_complexity 1 84 0 1074 153 0 28 chr6 5092473 5092650 -177322592 + FRAM SINE Alu 5 176 0 442 343 78 0 chr6 5093188 5093407 -177321835 - MIR SINE MIR -7 255 20 5586 110 52 5 chr6 5093557 5094390 -177320852 + MER4D LTR ERV1 1 872 0 262 129 32 32 chr6 5094917 5094979 -177320263 + CT-rich Low_complexity Low_complexity 1 62 0 840 153 98 37 chr6 5094988 5095151 -177320091 - FAM SINE Alu 0 175 3 4126 198 41 13 chr6 5095158 5096062 -177319180 - Charlie1a DNA MER1_type -268 1187 259 738 205 12 58 chr6 5096066 5096237 -177319005 - Charlie1a DNA MER1_type -1291 164 2 2287 89 13 7 chr6 5096423 5096725 -177318517 + AluSx SINE Alu 1 304 -8 1920 112 45 17 chr6 5096753 5097040 -177318202 - AluJo SINE Alu -17 295 1 1823 178 0 0 chr6 5098047 5098350 -177316892 + AluJo SINE Alu 1 303 -9 543 211 181 15 chr6 5098592 5098791 -177316451 + LTR48 LTR ERV1 490 721 -66 1037 152 0 18 chr6 5098791 5098956 -177316286 - FRAM SINE Alu -15 161 1 482 133 13 0 chr6 5098956 5099031 -177316211 + LTR49 LTR ERV1 520 595 0 496 283 122 5 chr6 5099041 5099246 -177315996 - L1MC/D LINE L1 -2021 5787 5559 1907 133 0 84 chr6 5099487 5099819 -177315423 - AluSx SINE Alu -8 304 1 571 189 28 56 chr6 5100310 5100453 -177314789 + Tigger8 DNA MER2_type 154 292 -374 298 280 93 47 chr6 5100588 5100824 -177314418 + L1MEd LINE L1 496 742 -5377 1207 141 6 0 chr6 5101067 5101244 -177313998 - AluJo SINE Alu -3 309 132 281 189 44 0 chr6 5101245 5101335 -177313907 + (TA)n Simple_repeat Simple_repeat 2 95 0 660 122 122 0 chr6 5101336 5101443 -177313799 - FLAM_C SINE Alu -13 120 1 641 208 63 35 chr6 5103344 5103564 -177311678 - L1MC2 LINE L1 -1 6343 6159 714 194 0 16 chr6 5103566 5103695 -177311547 - AluJo SINE Alu -184 128 2 2397 154 67 29 chr6 5103702 5104292 -177310950 - L1MC2 LINE L1 -2 6298 5721 48 43 0 0 chr6 5104296 5104365 -177310877 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr6 5106033 5106054 -177309188 + AT_rich Low_complexity Low_complexity 1 21 0 1527 207 200 18 chr6 5106219 5106673 -177308569 - MLT1F LTR MaLR -3 539 3 558 53 13 0 chr6 5107712 5107787 -177307455 + L1PA5 LINE L1 6079 6154 0 2255 98 6 3 chr6 5107793 5108120 -177307122 - HSMAR2 DNA Mariner -970 332 5 761 171 32 21 chr6 5108181 5108368 -177306874 - Charlie1 DNA MER1_type -7 2754 2566 517 228 19 84 chr6 5108408 5108445 -177306797 + L2 LINE L2 3113 3151 -162 197 33 33 0 chr6 5108445 5108475 -177306767 + (TA)n Simple_repeat Simple_repeat 2 32 0 2249 92 14 3 chr6 5108475 5108770 -177306472 - AluSc SINE Alu -11 298 1 517 228 19 84 chr6 5108770 5108946 -177306296 + L2 LINE L2 3149 3313 0 408 261 96 50 chr6 5108982 5109181 -177306061 - MIR SINE MIR -26 236 29 314 252 36 58 chr6 5109367 5109506 -177305736 + L1ME4a LINE L1 5978 6113 -8 1653 182 27 3 chr6 5109585 5109882 -177305360 + AluJo SINE Alu 1 304 -8 2194 103 7 3 chr6 5109902 5110194 -177305048 + AluSg SINE Alu 2 294 -16 21 0 0 0 chr6 5110326 5110347 -177304895 + AT_rich Low_complexity Low_complexity 1 21 0 438 236 0 0 chr6 5110432 5110521 -177304721 - MER96B DNA MER1_type? 0 417 329 564 178 0 0 chr6 5110534 5110641 -177304601 + (TG)n Simple_repeat Simple_repeat 2 108 0 2074 101 0 24 chr6 5110649 5110936 -177304306 - AluSx SINE Alu -32 280 1 4725 88 5 0 chr6 5110936 5111559 -177303683 - L1PA11 LINE L1 -135 6039 5414 684 89 0 0 chr6 5111568 5111658 -177303584 - AluSp/q SINE Alu -11 302 213 685 159 119 99 chr6 5111764 5112016 -177303226 - MER69 DNA AcHobo -5 2521 2265 1606 126 56 34 chr6 5112085 5112354 -177302888 + AluSx SINE Alu 1 275 -37 31 0 0 0 chr6 5112355 5112386 -177302856 + AT_rich Low_complexity Low_complexity 1 31 0 255 133 22 44 chr6 5112470 5112605 -177302637 + (TA)n Simple_repeat Simple_repeat 1 132 0 240 283 152 0 chr6 5112748 5112886 -177302356 - MLT1E LTR MaLR -398 195 37 472 277 32 27 chr6 5112903 5113212 -177302030 - MER69 DNA AcHobo -2080 446 95 225 0 0 0 chr6 5113389 5113414 -177301828 + (T)n Simple_repeat Simple_repeat 1 25 0 1027 138 27 43 chr6 5113421 5113609 -177301633 + Tigger1 DNA MER2_type 1625 1809 -609 567 53 0 0 chr6 5113615 5113691 -177301551 - L1PA6 LINE L1 0 6154 6079 195 162 0 0 chr6 5113771 5113808 -177301434 + (ATGGTG)n Simple_repeat Simple_repeat 5 41 0 2610 133 36 2 chr6 5113828 5114242 -177301000 + MSTA LTR MaLR 1 428 0 237 79 0 0 chr6 5114734 5114772 -177300470 - L1MB3 LINE L1 -2 6181 6144 1959 138 0 26 chr6 5114933 5115237 -177300005 - AluJb SINE Alu -16 296 1 268 317 62 21 chr6 5115352 5115497 -177299745 + MIR SINE MIR 20 170 -92 266 344 61 0 chr6 5115659 5115790 -177299452 + MER20 DNA MER1_type 55 193 -26 291 302 128 23 chr6 5115865 5116037 -177299205 - MLT1L LTR MaLR -204 411 222 298 286 114 23 chr6 5117310 5117485 -177297757 + MIR SINE MIR 28 218 -44 30 27 0 0 chr6 5117910 5117947 -177297295 + AT_rich Low_complexity Low_complexity 1 37 0 1744 212 48 75 chr6 5117967 5118524 -177296718 - MER34 LTR ERV1 0 542 1 545 181 296 35 chr6 5119835 5120034 -177295208 + MLT1G1 LTR MaLR 340 595 0 367 283 33 7 chr6 5120438 5120590 -177294652 + L2 LINE L2 2006 2161 -1153 301 284 0 0 chr6 5120617 5120684 -177294558 + MER21B LTR ERV1 13 79 -784 1274 227 89 20 chr6 5120775 5121342 -177293900 + MER21B LTR ERV1 98 834 -97 244 373 85 27 chr6 5121346 5121759 -177293483 + L2 LINE L2 2334 2770 -544 344 190 25 13 chr6 5122092 5122171 -177293071 - MER96 DNA MER1_type? -90 85 6 384 131 131 164 chr6 5122888 5122980 -177292262 + MER5A DNA MER1_type 13 98 -91 682 172 0 8 chr6 5122980 5123102 -177292140 + FLAM_A SINE Alu 1 121 -12 384 131 131 164 chr6 5123102 5123192 -177292050 + MER5A DNA MER1_type 98 189 0 21 71 0 0 chr6 5124179 5124221 -177291021 + GC_rich Low_complexity Low_complexity 1 42 0 1441 182 22 80 chr6 5126975 5127084 -177288158 + MER58B DNA MER1_type 1 115 -2305 2330 103 3 0 chr6 5127084 5127386 -177287856 - AluSq SINE Alu -10 303 1 1441 182 22 80 chr6 5127386 5127638 -177287604 + MER58B DNA MER1_type 115 341 0 21 36 0 0 chr6 5128321 5128349 -177286893 + AT_rich Low_complexity Low_complexity 1 28 0 293 0 27 0 chr6 5129007 5129044 -177286198 + (CA)n Simple_repeat Simple_repeat 2 39 0 2157 104 0 27 chr6 5131421 5131718 -177283524 + AluSg SINE Alu 1 289 -21 1844 180 0 7 chr6 5133191 5133497 -177281745 + AluJo SINE Alu 1 304 -8 1494 150 42 0 chr6 5133829 5134116 -177281126 + L1MA4 LINE L1 5997 6295 -5 413 225 167 8 chr6 5134137 5134257 -177280985 + MER20 DNA MER1_type 50 188 -31 2379 148 13 3 chr6 5134259 5134651 -177280591 - MER57A LTR ERV1 0 403 8 2128 118 0 7 chr6 5134687 5135006 -177280236 + AluSx SINE Alu 1 317 0 614 225 13 13 chr6 5135011 5135162 -177280080 + L1MC4a LINE L1 7657 7807 -1 1910 167 10 0 chr6 5135203 5135497 -177279745 + AluJo SINE Alu 5 301 -11 285 304 73 42 chr6 5135570 5135761 -177279481 + MIR SINE MIR 14 210 -52 1554 155 0 0 chr6 5136000 5136245 -177278997 - MSTC LTR MaLR -2 426 182 531 103 0 0 chr6 5136260 5136328 -177278914 - AluJ/FRAM SINE Alu -27 285 218 1750 158 7 31 chr6 5136350 5136642 -177278600 - AluJo SINE Alu -27 285 1 823 143 7 7 chr6 5136647 5136794 -177278448 - MSTC LTR MaLR -281 147 1 693 184 8 16 chr6 5136989 5137114 -177278128 - FLAM_A SINE Alu -9 124 1 489 245 123 0 chr6 5137477 5137632 -177277610 + L1ME LINE L1 5566 5739 -431 1661 164 0 18 chr6 5138198 5138374 -177276868 - AluJb SINE Alu -16 296 125 360 43 0 0 chr6 5138374 5138420 -177276822 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1661 164 0 18 chr6 5138420 5138517 -177276725 - AluJb SINE Alu -187 125 28 831 167 0 0 chr6 5138601 5138733 -177276509 - FLAM_C SINE Alu 0 133 2 424 216 104 16 chr6 5138735 5138860 -177276382 - MIR SINE MIR -112 150 15 180 289 84 73 chr6 5139773 5140046 -177275196 + L2 LINE L2 2400 2675 -639 501 304 87 11 chr6 5140371 5140555 -177274687 - MIR SINE MIR -6 256 59 228 227 0 0 chr6 5140660 5140704 -177274538 - MIR SINE MIR -114 94 51 1317 177 92 44 chr6 5140790 5141084 -177274158 - AluJo SINE Alu -4 308 1 2185 106 7 13 chr6 5142622 5142925 -177272317 - AluSg SINE Alu -7 303 3 2080 144 0 3 chr6 5143269 5143567 -177271675 - AluJb SINE Alu -15 297 1 213 257 9 64 chr6 5143758 5143867 -177271375 + L2 LINE L2 2426 2528 -786 233 279 25 0 chr6 5144098 5144177 -177271065 - MLT1H LTR MaLR 0 549 469 417 298 198 49 chr6 5144377 5144522 -177270720 + L2 LINE L2 2569 2691 -581 2259 94 0 3 chr6 5144522 5144832 -177270410 + AluSx SINE Alu 1 309 0 417 298 198 49 chr6 5144832 5145291 -177269951 + L2 LINE L2 2691 3272 0 2020 82 78 4 chr6 5146737 5147006 -177268236 + AluSg SINE Alu 1 289 -21 267 288 49 103 chr6 5147458 5147642 -177267600 + MER5B DNA MER1_type 1 174 -4 382 222 25 0 chr6 5147709 5147790 -177267452 - MER5A DNA MER1_type -82 107 25 310 241 25 0 chr6 5149828 5149907 -177265335 - MER5A DNA MER1_type -100 89 9 431 255 221 7 chr6 5150449 5150598 -177264644 + L3 LINE CR1 1392 1572 -5 316 245 116 54 chr6 5150759 5150906 -177264336 + MIR3 SINE MIR 41 196 -12 281 237 96 74 chr6 5151234 5151369 -177263873 + L2 LINE L2 3133 3270 -2 1846 132 55 4 chr6 5152148 5152421 -177262821 + AluSg SINE Alu 5 291 -19 974 129 0 0 chr6 5152725 5152857 -177262385 - FLAM_A SINE Alu -1 132 1 767 255 45 52 chr6 5153149 5153416 -177261826 + MLT1J LTR MaLR 243 507 -4 1647 58 44 26 chr6 5153631 5153857 -177261385 + MER30 DNA MER1_type 1 230 0 777 273 124 12 chr6 5153889 5154292 -177260950 - L1ME4a LINE L1 -118 6003 5556 208 184 0 61 chr6 5155004 5155053 -177260189 + MIR SINE MIR 204 249 -13 2312 77 28 0 chr6 5156266 5156552 -177258690 + AluSc SINE Alu 1 294 -15 1023 160 0 0 chr6 5156724 5156874 -177258368 + FAM SINE Alu 12 161 -24 1954 137 0 27 chr6 5157087 5157408 -177257834 - AluSx SINE Alu 0 313 1 2066 147 3 10 chr6 5158496 5158810 -177256432 + AluSx SINE Alu 1 312 0 2042 122 21 7 chr6 5158899 5159186 -177256056 - AluSg SINE Alu -19 291 1 801 137 24 0 chr6 5159364 5159488 -177255754 - LTR12 LTR ERV1 -229 485 359 268 236 0 0 chr6 5159488 5159560 -177255682 - LTR30 LTR ERV1 -98 624 553 1465 134 23 23 chr6 5159561 5159863 -177255379 - LTR12 LTR ERV1 -406 2032 55 268 211 0 0 chr6 5159863 5159915 -177255327 - LTR30 LTR ERV1 -670 52 1 431 191 0 0 chr6 5163304 5163372 -177251870 - AluJ/FLAM SINE Alu -243 69 2 219 289 24 24 chr6 5163781 5163864 -177251378 - MER5B DNA MER1_type -74 104 22 * 234 289 88 69 chr6 5163846 5164005 -177251237 + L2 LINE L2 3070 3231 -41 199 299 26 26 chr6 5164154 5164231 -177251011 + L2 LINE L2 2678 2754 -560 185 270 324 0 chr6 5164396 5164507 -177250735 + L2 LINE L2 3126 3272 0 2446 159 30 13 chr6 5165477 5165948 -177249294 + L1MB7 LINE L1 5645 6123 -61 2148 119 14 0 chr6 5165948 5166241 -177249001 - AluSx SINE Alu -15 297 1 989 113 0 0 chr6 5166243 5166376 -177248866 - AluJb SINE Alu -179 133 1 268 143 79 0 chr6 5166376 5166439 -177248803 + L1MB8 LINE L1 6111 6178 0 1010 186 64 25 chr6 5166512 5166792 -177248450 + MER33 DNA MER1_type 31 321 -3 690 217 7 0 chr6 5166898 5167050 -177248192 - L1MD2 LINE L1 -15 6344 6192 2147 200 47 12 chr6 5168234 5168720 -177246522 - MLT1D LTR MaLR 0 505 3 380 339 155 16 chr6 5170051 5170361 -177244881 + L1 LINE L1 2266 2618 -3528 849 173 0 0 chr6 5170409 5170542 -177244700 + FLAM_C SINE Alu 1 133 0 305 198 151 47 chr6 5170792 5170878 -177244364 + L1ME4a LINE L1 5801 5895 -226 279 339 48 60 chr6 5171156 5171404 -177243838 - MIR SINE MIR 0 262 18 195 42 0 0 chr6 5171405 5171429 -177243813 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 564 270 68 0 chr6 5172464 5172593 -177242649 - MER5B DNA MER1_type 0 178 34 2893 174 56 18 chr6 5172593 5173197 -177242045 - L1MB5 LINE L1 -6 6168 5542 564 270 68 0 chr6 5173197 5173230 -177242012 - MER5B DNA MER1_type -144 34 5 470 221 164 64 chr6 5173284 5173755 -177241487 + L1MC5 LINE L1 7398 7915 -46 2890 173 50 4 chr6 5174734 5175279 -177239963 - L1MB3 LINE L1 -10 6173 5604 498 280 156 9 chr6 5175381 5175599 -177239643 + MIR SINE MIR 1 250 -12 2909 182 18 2 chr6 5175819 5176369 -177238873 - L1MB7 LINE L1 -9 6175 5617 2093 149 0 9 chr6 5177193 5177508 -177237734 + AluJb SINE Alu 1 312 0 367 321 51 36 chr6 5177997 5178193 -177237049 - MIR SINE MIR 0 262 64 1510 156 57 4 chr6 5178525 5178788 -177236454 + MER57A LTR ERV1 1 277 -126 1016 138 33 0 chr6 5178828 5178980 -177236262 - AluJb SINE Alu -11 301 145 1576 142 24 0 chr6 5178986 5179233 -177236009 + AluJb SINE Alu 44 296 -16 658 202 8 0 chr6 5179234 5179363 -177235879 + MER57A LTR ERV1 274 403 0 340 125 0 31 chr6 5179724 5179788 -177235454 + L1MB4 LINE L1 6119 6180 0 307 239 86 0 chr6 5180273 5180388 -177234854 + MIR3 SINE MIR 51 176 -32 189 337 22 11 chr6 5180558 5180650 -177234592 - MIR3 SINE MIR -12 196 104 264 291 93 0 chr6 5180840 5180926 -177234316 - MIR3 SINE MIR -52 156 63 1135 218 201 43 chr6 5181092 5181560 -177233682 + MLT1G LTR MaLR 36 577 -13 2385 67 40 0 chr6 5183347 5183646 -177231596 + AluY SINE Alu 1 311 0 285 288 0 0 chr6 5184361 5184434 -177230808 - MIR SINE MIR -86 176 104 213 39 0 0 chr6 5184871 5184897 -177230345 + (CATTC)n Simple_repeat Simple_repeat 1 26 0 212 242 16 121 chr6 5185365 5185489 -177229753 - MIR SINE MIR -108 154 44 302 310 37 43 chr6 5185580 5185767 -177229475 + MLT1L LTR MaLR 105 290 -325 198 0 0 0 chr6 5187654 5187676 -177227566 + (TC)n Simple_repeat Simple_repeat 2 23 0 258 226 70 50 chr6 5188386 5188517 -177226725 - MIR SINE MIR -63 145 13 474 228 174 11 chr6 5189385 5189569 -177225673 + MIR SINE MIR 47 260 -2 2340 89 0 13 chr6 5190061 5190374 -177224868 - AluSc SINE Alu 0 309 1 430 300 80 34 chr6 5190613 5190850 -177224392 + MIR SINE MIR 2 249 -13 271 302 70 31 chr6 5190930 5191059 -177224183 + L2 LINE L2 3179 3312 -1 348 208 56 83 chr6 5191088 5191232 -177224010 - MIR3 SINE MIR -2 206 67 1798 150 25 0 chr6 5192095 5192381 -177222861 - AluSx SINE Alu -18 294 2 257 234 26 13 chr6 5192506 5192583 -177222659 + MIR SINE MIR 83 160 -102 2412 66 0 25 chr6 5193526 5193845 -177221397 + AluY SINE Alu 1 311 0 197 253 121 24 chr6 5193849 5193932 -177221310 - MIR SINE MIR -88 120 30 2083 123 7 3 chr6 5194070 5194372 -177220870 - AluSx SINE Alu -9 303 1 189 195 0 0 chr6 5197043 5197084 -177218158 + GA-rich Low_complexity Low_complexity 4 44 0 330 298 8 24 chr6 5197103 5197227 -177218015 + (TATG)n Simple_repeat Simple_repeat 2 123 0 2062 134 17 3 chr6 5197465 5197764 -177217478 - AluJo SINE Alu -9 303 1 267 255 37 85 chr6 5198335 5198523 -177216719 - L2 LINE L2 -1260 2054 1876 2003 91 53 138 chr6 5199348 5199745 -177215497 + THE1B LTR MaLR 2 364 0 29 47 0 0 chr6 5200132 5200175 -177215067 + AT_rich Low_complexity Low_complexity 1 43 0 204 261 0 0 chr6 5201185 5201231 -177214011 + MER5B DNA MER1_type 108 153 -25 303 136 0 0 chr6 5201465 5201524 -177213718 + (GA)n Simple_repeat Simple_repeat 2 60 0 1642 289 77 24 chr6 5201837 5202612 -177212630 - L1M LINE L1 -754 5392 4587 2078 102 53 0 chr6 5202612 5202897 -177212345 - AluSx SINE Alu -12 300 1 1642 289 77 24 chr6 5202897 5202991 -177212251 - L1M LINE L1 -1559 4587 4499 * 1884 251 93 29 chr6 5202989 5203674 -177211568 + L1ME3A LINE L1 5375 6103 -67 2367 106 0 0 chr6 5203677 5203979 -177211263 + AluSx SINE Alu 1 302 -10 2315 112 0 6 chr6 5204520 5204834 -177210408 - AluSx SINE Alu 0 312 1 24 91 0 0 chr6 5205005 5205071 -177210171 + AT_rich Low_complexity Low_complexity 1 66 0 183 203 95 14 chr6 5205576 5205650 -177209592 - MIR SINE MIR -71 191 112 442 242 11 0 chr6 5205918 5206009 -177209233 - AluJ/FLAM SINE Alu -219 93 2 1938 237 124 61 chr6 5206922 5207876 -177207366 + L1MC4 LINE L1 6891 7904 -138 234 176 59 0 chr6 5207942 5208010 -177207232 + L1MC4 LINE L1 7931 8002 -40 697 197 0 23 chr6 5208087 5208219 -177207023 - FLAM_A SINE Alu -4 129 1 307 244 122 0 chr6 5208493 5208575 -177206667 + MER82 DNA MER2_type 556 647 -6 252 0 0 0 chr6 5209474 5209502 -177205740 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 930 70 0 0 chr6 5209505 5209619 -177205623 - AluSg/x SINE Alu -25 287 174 475 265 111 17 chr6 5209739 5209920 -177205322 + L1ME LINE L1 5585 5782 -339 1039 245 119 14 chr6 5214589 5215059 -177200183 + MLT1G LTR MaLR 1 548 -42 2375 102 0 0 chr6 5215059 5215354 -177199888 - AluSg SINE Alu -15 295 1 431 300 50 7 chr6 5217011 5217151 -177198091 + L2 LINE L2 3119 3264 -8 429 205 32 3 chr6 5217158 5217329 -177197913 - MARNA DNA Mariner -197 389 161 21 0 0 0 chr6 5217438 5217459 -177197783 + AT_rich Low_complexity Low_complexity 1 21 0 2387 80 30 0 chr6 5217523 5217825 -177197417 + AluSx SINE Alu 1 311 -1 297 125 0 0 chr6 5218034 5218090 -177197152 + (A)n Simple_repeat Simple_repeat 1 56 0 275 127 0 18 chr6 5218144 5218199 -177197043 - L1MB4 LINE L1 0 6180 6127 3053 151 21 36 chr6 5218220 5218836 -177196406 - L1MB3 LINE L1 0 6183 5577 314 287 129 25 chr6 5220747 5220949 -177194293 + L2 LINE L2 2154 2376 -938 1223 155 33 0 chr6 5222827 5223040 -177192202 + L1MA8 LINE L1 6062 6281 -10 21 36 0 0 chr6 5223533 5223561 -177191681 + AT_rich Low_complexity Low_complexity 1 28 0 290 273 152 0 chr6 5223697 5223796 -177191446 - L2 LINE L2 0 3272 3159 207 100 0 0 chr6 5224195 5224225 -177191017 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 362 243 135 9 chr6 5224620 5224731 -177190511 - MIR SINE MIR -130 132 8 231 232 73 66 chr6 5225444 5225595 -177189647 + L1PA6 LINE L1 4897 5048 -1098 2294 112 0 0 chr6 5225694 5225990 -177189252 + AluSx SINE Alu 2 297 -15 2376 172 103 4 chr6 5226269 5226758 -177188484 + L1PA6 LINE L1 5603 6154 0 304 269 15 75 chr6 5226758 5226892 -177188350 + L1MC4a LINE L1 5811 5936 -1872 1528 157 71 31 chr6 5227058 5227181 -177188061 + AluJb SINE Alu 1 118 -194 204 97 0 0 chr6 5227181 5227212 -177188030 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1528 157 71 31 chr6 5227212 5227382 -177187860 + AluJb SINE Alu 118 306 -6 454 251 199 9 chr6 5227545 5227756 -177187486 + MIR SINE MIR 12 262 0 1849 137 18 7 chr6 5227767 5228044 -177187198 - AluJb SINE Alu -24 288 9 312 328 12 12 chr6 5228249 5228420 -177186822 + (TTAGGG)n Simple_repeat Simple_repeat 3 173 0 25 51 0 0 chr6 5229432 5229471 -177185771 + AT_rich Low_complexity Low_complexity 1 39 0 685 235 133 0 chr6 5229574 5229740 -177185502 + Tigger3(Golem) DNA MER2_type 1 188 -2841 357 313 137 16 chr6 5230006 5230255 -177184987 + L1ME4a LINE L1 5617 5895 -226 1243 244 217 6 chr6 5230624 5231099 -177184143 + L1MC4 LINE L1 7154 7728 -314 2227 101 7 0 chr6 5231735 5232031 -177183211 + AluSx SINE Alu 1 298 -14 378 93 0 0 chr6 5233014 5233068 -177182174 - MLT2D LTR ERVL 0 414 361 210 273 91 0 chr6 5233494 5233560 -177181682 + MIR SINE MIR 119 190 -72 1148 137 6 0 chr6 5233718 5233879 -177181363 - FRAM SINE Alu -4 162 1 269 303 18 55 chr6 5233949 5234114 -177181128 - Charlie7 DNA MER1_type 0 2612 2454 1931 115 3 78 chr6 5234320 5234651 -177180591 + AluSx SINE Alu 1 306 -6 343 235 12 71 chr6 5234786 5234871 -177180371 + L2 LINE L2 3132 3211 -61 413 301 92 5 chr6 5234950 5235156 -177180086 - MIR SINE MIR -3 259 36 363 273 56 37 chr6 5235395 5235556 -177179686 + MIR SINE MIR 13 176 -86 2287 100 0 10 chr6 5236383 5236694 -177178548 + AluSg1 SINE Alu 1 308 -1 2099 94 3 82 chr6 5236882 5237213 -177178029 + AluSq SINE Alu 2 306 -7 3779 147 75 22 chr6 5237847 5238540 -177176702 + L1MB8 LINE L1 5444 6173 -5 629 224 141 0 chr6 5239708 5239864 -177175378 - MER5B DNA MER1_type 0 178 1 23 54 0 0 chr6 5239988 5240025 -177175217 + AT_rich Low_complexity Low_complexity 1 37 0 374 233 20 130 chr6 5240832 5240978 -177174264 + MIR SINE MIR 20 149 -59 459 322 93 14 chr6 5242954 5243168 -177172074 - MIR SINE MIR -13 249 19 384 211 44 26 chr6 5243405 5243519 -177171723 + MER4C LTR ERV1 1 116 -349 810 220 39 35 chr6 5243538 5243811 -177171431 + MER4C LTR ERV1 278 465 0 351 210 210 14 chr6 5245197 5245335 -177169907 - MIR3 SINE MIR -7 201 37 267 313 111 14 chr6 5245695 5245839 -177169403 + MIR SINE MIR 77 234 -28 218 314 110 25 chr6 5245909 5246027 -177169215 - MIR3 SINE MIR -68 140 13 2015 136 0 10 chr6 5246763 5247057 -177168185 - AluSx SINE Alu -5 307 17 363 303 18 9 chr6 5247957 5248066 -177167176 - MIR3 SINE MIR -8 200 91 2641 153 27 0 chr6 5248188 5248634 -177166608 - L1MB2 LINE L1 -3 6168 5711 658 275 113 17 chr6 5249484 5249823 -177165419 + L1ME LINE L1 5388 5780 -341 2127 115 7 0 chr6 5249853 5250140 -177165102 + AluSq SINE Alu 1 289 -24 2292 89 3 16 chr6 5250142 5250458 -177164784 + AluSx SINE Alu 1 312 0 867 293 168 55 chr6 5250607 5251217 -177164025 - L1MC4a LINE L1 -376 5802 5271 2332 77 28 0 chr6 5251565 5251852 -177163390 - AluSp SINE Alu -18 295 1 247 356 46 31 chr6 5252254 5252577 -177162665 - L2 LINE L2 -954 2360 2033 5168 69 15 14 chr6 5252672 5253326 -177161916 + L1PA8 LINE L1 5514 6168 -4 328 259 55 82 chr6 5253407 5253456 -177161786 + L1M4 LINE L1 2879 2928 -3218 2056 141 0 3 chr6 5253456 5253753 -177161489 - AluSx SINE Alu -16 296 1 328 259 55 82 chr6 5253753 5253894 -177161348 + L1M4 LINE L1 2928 3065 -3081 2560 55 0 13 chr6 5253894 5254205 -177161037 + AluY SINE Alu 1 307 -4 328 259 55 82 chr6 5254205 5254233 -177161009 + L1M4 LINE L1 3065 3092 -3054 22 0 0 0 chr6 5255706 5255728 -177159514 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 5255760 5255781 -177159461 + AT_rich Low_complexity Low_complexity 1 21 0 338 113 9 12 chr6 5256170 5256401 -177158841 + AluSq SINE Alu 1 302 0 761 151 17 0 chr6 5258831 5258950 -177156292 - FLAM_A SINE Alu -12 121 1 21 0 0 0 chr6 5259301 5259322 -177155920 + AT_rich Low_complexity Low_complexity 1 21 0 209 289 134 31 chr6 5259679 5259776 -177155466 - L2 LINE L2 -188 3084 2978 1094 127 6 35 chr6 5260328 5260501 -177154741 - AluSg/x SINE Alu -22 290 123 2384 99 0 0 chr6 5261358 5261661 -177153581 + AluSx SINE Alu 1 303 -9 1814 145 7 37 chr6 5261841 5262137 -177153105 + AluJo SINE Alu 1 287 -25 3617 99 73 4 chr6 5262304 5262797 -177152445 + MER1A DNA MER1_type 1 527 0 451 315 62 6 chr6 5266188 5266366 -177148876 + MIR SINE MIR 61 248 -14 207 339 66 25 chr6 5266388 5266509 -177148733 + MIR SINE MIR 131 256 -6 583 244 0 8 chr6 5266811 5266934 -177148308 + L2 LINE L2 3192 3313 0 2349 84 0 7 chr6 5267250 5267547 -177147695 - AluSc SINE Alu -14 295 1 1986 119 7 3 chr6 5267613 5267899 -177147343 + AluSq SINE Alu 1 287 -26 2842 10 0 0 chr6 5267942 5268248 -177146994 - AluYb8 SINE Alu -12 306 1 23 54 0 0 chr6 5268886 5268923 -177146319 + AT_rich Low_complexity Low_complexity 1 37 0 2058 162 40 0 chr6 5269216 5269567 -177145675 + MER47A DNA MER2_type 2 366 0 216 0 0 0 chr6 5270265 5270289 -177144953 + (A)n Simple_repeat Simple_repeat 1 24 0 459 0 0 0 chr6 5270289 5270340 -177144902 + (TA)n Simple_repeat Simple_repeat 1 51 0 201 289 84 12 chr6 5270576 5270659 -177144583 - L2 LINE L2 -38 3275 3187 284 333 81 43 chr6 5271243 5271453 -177143789 - L2 LINE L2 -212 3060 2843 186 313 70 26 chr6 5271542 5271657 -177143585 + MIR SINE MIR 15 134 -128 248 333 61 12 chr6 5271973 5272138 -177143104 - L2 LINE L2 -1015 2299 2127 201 318 34 62 chr6 5273362 5273541 -177141701 + L2 LINE L2 2477 2650 -664 365 288 70 109 chr6 5273784 5274097 -177141145 + L2 LINE L2 2967 3267 -5 31 82 0 0 chr6 5275342 5275415 -177139827 + AT_rich Low_complexity Low_complexity 1 73 0 2924 113 57 2 chr6 5276511 5276917 -177138325 - MSTA LTR MaLR 0 428 1 286 259 82 0 chr6 5277453 5277538 -177137704 + MIR SINE MIR 32 123 -85 255 261 85 54 chr6 5277605 5277735 -177137507 + L2 LINE L2 2862 2995 -318 274 298 145 21 chr6 5277928 5278163 -177137079 + MLT1J LTR MaLR 242 505 -6 8844 103 52 2 chr6 5278485 5279709 -177135533 + HSMAR1 DNA Mariner 1 1285 -2 188 219 146 0 chr6 5279714 5279755 -177135487 - L2 LINE L2 -42 3230 3184 1445 208 153 2 chr6 5280362 5280786 -177134456 + Charlie1b DNA MER1_type 34 521 -2 733 184 247 0 chr6 5280887 5281061 -177134181 - MER20 DNA MER1_type -1 218 2 282 290 0 0 chr6 5281129 5281191 -177134051 - MIR SINE MIR -12 250 189 348 215 0 0 chr6 5281208 5281273 -177133969 + MER20 DNA MER1_type 154 218 -1 2461 96 0 0 chr6 5281383 5281696 -177133546 + AluSq SINE Alu 1 313 0 299 100 0 0 chr6 5281710 5281750 -177133492 - Charlie1 DNA MER1_type -2 2759 2720 322 217 126 51 chr6 5281751 5281909 -177133333 - MIR3 SINE MIR -61 147 1 * 420 317 108 67 chr6 5281909 5282508 -177132734 + L2 LINE L2 2304 2929 -385 2304 106 59 12 chr6 5282698 5283020 -177132222 + MER1B DNA MER1_type 1 337 0 336 352 87 27 chr6 5283153 5283372 -177131870 - L2 LINE L2 -222 3050 2819 517 283 62 6 chr6 5283514 5283691 -177131551 + MIR SINE MIR 76 262 0 445 230 30 0 chr6 5284162 5284262 -177130980 - MIR3 SINE MIR -15 193 91 28 48 0 0 chr6 5285766 5285808 -177129434 + GC_rich Low_complexity Low_complexity 1 42 0 2407 84 0 3 chr6 5287446 5287754 -177127488 - AluSx SINE Alu -5 307 1 1961 119 0 110 chr6 5289106 5289442 -177125800 + AluJb SINE Alu 2 300 -2 186 181 153 83 chr6 5289515 5289587 -177125655 - MIR3 SINE MIR -13 195 119 536 111 0 0 chr6 5289656 5289737 -177125505 - AluSq SINE Alu 0 313 233 1096 90 0 7 chr6 5289737 5289882 -177125360 - AluSq SINE Alu -168 144 1 1340 221 34 37 chr6 5289980 5290274 -177124968 - AluJb SINE Alu -9 293 1 393 184 26 0 chr6 5290904 5290980 -177124262 + MADE1 DNA Mariner 1 78 -2 268 214 119 127 chr6 5291034 5291160 -177124082 + MER5B DNA MER1_type 54 178 0 183 231 22 110 chr6 5291530 5291561 -177123681 - MIR SINE MIR -111 151 119 917 143 0 15 chr6 5291561 5291694 -177123548 + FLAM_C SINE Alu 3 133 0 183 231 22 110 chr6 5291694 5291753 -177123489 - MIR SINE MIR -143 119 69 2272 86 7 13 chr6 5292644 5292946 -177122296 + AluY SINE Alu 1 300 -11 8208 33 1 2 chr6 5292946 5294123 -177121119 - L1PA5 LINE L1 -569 5586 4409 4455 47 58 0 chr6 5294123 5294646 -177120596 + L1PA5 LINE L1 5585 6152 -2 328 301 164 35 chr6 5295840 5296166 -177119076 + L2 LINE L2 2717 3096 -176 362 333 98 50 chr6 5296201 5296618 -177118624 - MLT1K LTR MaLR -23 565 129 199 319 35 64 chr6 5296671 5296736 -177118506 + L2 LINE L2 3161 3226 -87 2144 76 0 0 chr6 5296736 5296998 -177118244 - AluSg SINE Alu -10 300 39 199 319 35 64 chr6 5296998 5297073 -177118169 + L2 LINE L2 3226 3297 -16 925 186 164 9 chr6 5297131 5297351 -177117891 + Tigger7 DNA MER2_type 8 261 -472 530 104 7 153 chr6 5297378 5297522 -177117720 + Tigger7 DNA MER2_type 2311 2433 -154 5997 151 37 16 chr6 5297700 5299121 -177116121 - L1MA4 LINE L1 -2 6298 4843 1053 149 24 53 chr6 5299121 5299329 -177115913 + Tigger7 DNA MER2_type 2290 2491 0 649 241 195 67 chr6 5299360 5299884 -177115358 + MLT1L LTR MaLR 3 593 -22 1843 137 7 28 chr6 5299894 5300179 -177115063 - AluJo SINE Alu -20 292 14 475 216 171 0 chr6 5300634 5300745 -177114497 + L2 LINE L2 3143 3272 0 575 241 15 30 chr6 5301547 5301680 -177113562 + MER94 DNA DNA 4 134 0 180 278 98 75 chr6 5303320 5303453 -177111789 + MIR SINE MIR 50 185 -77 2320 97 7 0 chr6 5304271 5304580 -177110662 + AluY SINE Alu 1 311 0 239 211 19 0 chr6 5304725 5304777 -177110465 + (TA)n Simple_repeat Simple_repeat 2 54 0 1644 198 92 24 chr6 5304792 5305171 -177110071 - MLT2B1 LTR ERVL -115 405 1 191 359 162 7 chr6 5305727 5305869 -177109373 + L2 LINE L2 2898 3061 -252 25 31 0 0 chr6 5306119 5306151 -177109091 + AT_rich Low_complexity Low_complexity 1 32 0 1332 124 14 18 chr6 5306617 5306834 -177108408 - L1MB3 LINE L1 -2 6181 5966 2078 124 0 45 chr6 5308130 5308276 -177106966 + AluSx SINE Alu 1 127 -185 2239 117 0 3 chr6 5308276 5308575 -177106667 + AluSp SINE Alu 11 308 -5 2078 124 0 45 chr6 5308575 5308742 -177106500 + AluSx SINE Alu 127 300 -12 857 274 115 32 chr6 5308982 5309416 -177105826 - L1MB3 LINE L1 -2032 5776 5307 1827 163 14 0 chr6 5311440 5311734 -177103508 - AluJb SINE Alu -14 298 1 365 241 111 19 chr6 5313782 5313890 -177101352 - L2 LINE L2 -3 3310 3193 4452 97 45 34 chr6 5314479 5315106 -177100136 - MER51A LTR ERV1 0 634 1 22 35 0 0 chr6 5315196 5315225 -177100017 + AT_rich Low_complexity Low_complexity 1 29 0 1720 167 14 10 chr6 5315902 5316195 -177099047 - AluJb SINE Alu -18 294 1 780 211 83 6 chr6 5316796 5316952 -177098290 + FRAM SINE Alu 1 166 -10 1252 305 88 57 chr6 5317436 5318502 -177096740 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5319163 5319186 -177096056 + (CA)n Simple_repeat Simple_repeat 2 24 0 2869 157 81 13 chr6 5319517 5320038 -177095204 - MER21A LTR ERV1 0 931 376 946 147 187 13 chr6 5320043 5320268 -177094974 - MER21A LTR ERV1 -667 264 1 415 184 112 0 chr6 5321149 5321247 -177093995 - MIR SINE MIR -17 245 137 4170 149 10 18 chr6 5321257 5321305 -177093937 - L1MB3 LINE L1 -2 6181 6134 2582 68 0 0 chr6 5321305 5321616 -177093626 - AluY SINE Alu 0 311 1 4170 149 10 18 chr6 5321616 5322246 -177092996 - L1MB3 LINE L1 -49 6134 5508 247 188 197 51 chr6 5322248 5322365 -177092877 - MIR SINE MIR -97 165 32 2348 105 0 0 chr6 5322541 5322847 -177092395 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5322855 5322882 -177092360 + (CAA)n Simple_repeat Simple_repeat 2 28 0 707 274 0 11 chr6 5323709 5323888 -177091354 - MER5B DNA MER1_type 0 178 2 750 112 0 0 chr6 5323961 5324068 -177091174 + AluSg/x SINE Alu 203 309 0 1800 84 0 16 chr6 5324761 5325010 -177090232 - L1PA6 LINE L1 -55 6099 5855 437 183 104 0 chr6 5325013 5325119 -177090123 + MLT2B2 LTR ERVL 351 465 -50 1295 132 51 180 chr6 5325837 5326192 -177089050 - AluJo SINE Alu -3 309 1 1050 158 0 0 chr6 5326483 5326641 -177088601 + FRAM SINE Alu 4 161 -15 483 18 0 0 chr6 5326967 5327023 -177088219 + (CA)n Simple_repeat Simple_repeat 1 56 0 239 232 171 0 chr6 5327436 5327518 -177087724 - MER5A DNA MER1_type -77 112 17 834 203 68 5 chr6 5327674 5327866 -177087376 - MIR SINE MIR -26 236 33 521 289 114 9 chr6 5328132 5328343 -177086899 - MIR SINE MIR -4 258 26 918 279 41 16 chr6 5329417 5329736 -177085506 - L1ME4a LINE L1 -259 5862 5536 447 158 12 12 chr6 5330264 5330346 -177084896 + MER117 DNA MER1_type 55 136 -61 339 280 88 40 chr6 5330752 5330877 -177084365 - MIR SINE MIR -58 150 20 259 345 236 3 chr6 5333314 5333615 -177081627 - L2 LINE L2 -318 2954 2586 410 217 61 20 chr6 5333622 5333826 -177081416 - MER5C DNA MER1_type -2 322 52 1825 190 40 3 chr6 5333928 5334280 -177080962 - MLT1A1 LTR MaLR 0 365 1 206 394 10 20 chr6 5334286 5334385 -177080857 - L2 LINE L2 -38 3234 3137 * 258 316 0 10 chr6 5334381 5334479 -177080763 - L2 LINE L2 -756 2558 2462 872 281 72 102 chr6 5334775 5335717 -177079525 + L1MC4a LINE L1 4390 5303 -843 336 248 132 16 chr6 5335752 5335881 -177079361 + L1MC4a LINE L1 5333 5476 -2332 219 271 139 66 chr6 5335925 5336047 -177079195 + L2 LINE L2 3183 3313 0 584 322 47 13 chr6 5336096 5336413 -177078829 + L1MC4a LINE L1 5566 5893 -1915 22 35 0 0 chr6 5337422 5337451 -177077791 + AT_rich Low_complexity Low_complexity 1 29 0 316 274 14 0 chr6 5337918 5337991 -177077251 - L2 LINE L2 -25 3247 3174 228 67 0 0 chr6 5338192 5338222 -177077020 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 445 217 30 136 chr6 5338959 5339019 -177076223 - MER5B DNA MER1_type -1 177 112 306 0 0 0 chr6 5339019 5339053 -177076189 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 445 217 30 136 chr6 5339053 5339190 -177076052 - MER5B DNA MER1_type -66 112 1 442 313 108 35 chr6 5339190 5339505 -177075737 - L2 LINE L2 -495 2819 2482 378 61 0 0 chr6 5340892 5340941 -177074301 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 2470 221 129 53 chr6 5341571 5342611 -177072631 + L1MCb LINE L1 3 1121 -4924 1935 167 50 81 chr6 5342626 5342674 -177072568 - LTR58 LTR ERV1 -2 677 629 1855 173 3 3 chr6 5342674 5342975 -177072267 + AluJb SINE Alu 1 301 -11 1935 167 50 81 chr6 5342975 5343254 -177071988 - LTR58 LTR ERV1 -50 629 343 2341 81 0 37 chr6 5343254 5343576 -177071666 + AluSg SINE Alu 1 310 0 1935 167 50 81 chr6 5343576 5343694 -177071548 - LTR58 LTR ERV1 -336 343 248 1500 116 455 40 chr6 5343694 5344142 -177071100 - MER51A LTR ERV1 0 634 1 1935 167 50 81 chr6 5344142 5344238 -177071004 - LTR58 LTR ERV1 -431 248 151 4066 147 14 1 chr6 5344239 5344941 -177070301 + MER50 LTR ERV1 1 711 -23 365 147 44 0 chr6 5344947 5345015 -177070227 - LTR58 LTR ERV1 -534 145 75 728 147 19 45 chr6 5345017 5345173 -177070069 + MST-int LTR MaLR 382 533 -1118 1145 213 20 20 chr6 5345888 5346141 -177069101 - MLT1A1 LTR MaLR -4 361 109 226 287 69 23 chr6 5347198 5347285 -177067957 - L2 LINE L2 -1 3271 3181 2839 128 40 6 chr6 5348921 5349391 -177065851 + LTR19A LTR ERV1 1 486 0 207 0 0 0 chr6 5349619 5349642 -177065600 + (T)n Simple_repeat Simple_repeat 1 23 0 428 332 105 26 chr6 5351008 5351360 -177063882 + L1MC/D LINE L1 5336 5715 -2093 2588 102 8 6 chr6 5352532 5352895 -177062347 + THE1B LTR MaLR 1 364 0 194 245 142 38 chr6 5353636 5353742 -177061500 + MIR SINE MIR 20 136 -72 1484 278 136 23 chr6 5354611 5355317 -177059925 - MER21B LTR ERV1 -57 806 21 21 36 0 0 chr6 5355407 5355435 -177059807 + AT_rich Low_complexity Low_complexity 1 28 0 1772 184 3 0 chr6 5355999 5356298 -177058944 + AluJb SINE Alu 1 300 -12 548 272 29 59 chr6 5357118 5357357 -177057885 - MIR SINE MIR -12 250 19 673 279 71 16 chr6 5359414 5359736 -177055506 + L1MC4a LINE L1 5502 5841 -1967 23 0 0 0 chr6 5361656 5361679 -177053563 + AT_rich Low_complexity Low_complexity 1 23 0 1708 44 48 24 chr6 5361679 5361929 -177053313 - L1MA1 LINE L1 0 6302 6047 350 310 90 33 chr6 5361976 5362308 -177052934 - L1M4 LINE L1 -914 5232 4882 293 138 0 17 chr6 5362321 5362379 -177052863 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1352 216 91 32 chr6 5364526 5364606 -177050636 - MER95 LTR ERV 0 431 357 1759 168 7 26 chr6 5364606 5364910 -177050332 - AluJo SINE Alu -14 298 1 1352 216 91 32 chr6 5364910 5365236 -177050006 - MER95 LTR ERV -74 357 1 2209 60 0 8 chr6 5366041 5366309 -177048933 + AluSg SINE Alu 1 266 -44 432 0 0 0 chr6 5366364 5366412 -177048830 + (TA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr6 5366412 5366433 -177048809 + (T)n Simple_repeat Simple_repeat 1 21 0 2230 132 0 0 chr6 5366683 5366994 -177048248 - AluSx SINE Alu -1 311 1 260 303 45 0 chr6 5367181 5367270 -177047972 - MIR3 SINE MIR -6 202 110 545 278 99 30 chr6 5367321 5367584 -177047658 + Tigger8 DNA MER2_type 24 304 -362 2301 84 3 0 chr6 5367666 5367953 -177047289 + AluSp SINE Alu 21 308 -5 2192 99 0 0 chr6 5368376 5368687 -177046555 - AluSq SINE Alu 0 311 1 2142 143 0 10 chr6 5369953 5370267 -177044975 - AluSx SINE Alu -1 311 1 302 264 23 23 chr6 5371276 5371363 -177043879 + MIR3 SINE MIR 98 184 -24 265 265 43 8 chr6 5371772 5371889 -177043353 - L1MC4 LINE L1 -1 8041 7921 2225 217 79 72 chr6 5372025 5372087 -177043155 - L1ME2 LINE L1 0 6164 6104 2099 129 0 7 chr6 5372087 5372389 -177042853 - AluSx SINE Alu -12 300 1 2225 217 79 72 chr6 5372389 5372680 -177042562 - L1ME2 LINE L1 -60 6104 5817 186 43 0 0 chr6 5372680 5372703 -177042539 + (TG)n Simple_repeat Simple_repeat 2 24 0 2225 217 79 72 chr6 5372703 5373538 -177041704 - L1ME2 LINE L1 -347 5817 4959 212 57 0 29 chr6 5373657 5373692 -177041550 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 202 337 0 12 chr6 5373709 5373792 -177041450 - L2 LINE L2 -67 3246 3165 2395 227 38 24 chr6 5373870 5374615 -177040627 + L1M4 LINE L1 3850 4604 -1542 259 243 0 0 chr6 5374629 5374699 -177040543 + Charlie1 DNA MER1_type 1569 1638 -1123 1939 175 72 30 chr6 5374742 5375239 -177040003 - L1MC3 LINE L1 -86 7699 7182 1072 143 0 34 chr6 5375308 5375483 -177039759 - AluJo SINE Alu -143 169 1 951 282 33 3 chr6 5375503 5375865 -177039377 + L1M4 LINE L1 4631 5003 -1143 784 163 0 7 chr6 5375893 5376046 -177039196 + L1MD1 LINE L1 6089 6240 -2 1416 114 35 26 chr6 5377199 5377427 -177037815 - MER30 DNA MER1_type 0 230 1 218 320 72 39 chr6 5377673 5377854 -177037388 + MIR3 SINE MIR 15 201 -7 200 167 21 0 chr6 5377893 5377941 -177037301 + CT-rich Low_complexity Low_complexity 4 52 0 4974 153 57 24 chr6 5377955 5379016 -177036226 - L1MA6 LINE L1 0 6300 5205 2555 57 0 0 chr6 5379687 5379988 -177035254 - AluY SINE Alu -10 301 1 652 264 56 0 chr6 5379994 5380172 -177035070 - MER5A DNA MER1_type -1 188 1 25 51 0 0 chr6 5380180 5380219 -177035023 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr6 5380262 5380289 -177034953 + AT_rich Low_complexity Low_complexity 1 27 0 2082 102 54 7 chr6 5380538 5380832 -177034410 - AluSg SINE Alu -2 308 1 255 103 0 0 chr6 5380877 5380916 -177034326 + (CA)n Simple_repeat Simple_repeat 1 39 0 2833 196 42 24 chr6 5381049 5381342 -177033900 - MER82 DNA MER2_type -12 641 355 1988 128 0 7 chr6 5381342 5381624 -177033618 + AluSx SINE Alu 1 280 -32 279 39 20 39 chr6 5381628 5381679 -177033563 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2833 196 42 24 chr6 5381679 5382003 -177033239 - MER82 DNA MER2_type -300 353 8 185 286 0 0 chr6 5382926 5382968 -177032274 + MIR SINE MIR 35 76 -186 23 0 0 0 chr6 5383361 5383384 -177031858 + AT_rich Low_complexity Low_complexity 1 23 0 2186 116 0 3 chr6 5384206 5384516 -177030726 - AluSx SINE Alu -3 309 1 185 62 0 31 chr6 5385452 5385484 -177029758 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 201 333 33 17 chr6 5385553 5385613 -177029629 - L2 LINE L2 -93 3179 3119 1564 220 114 22 chr6 5386172 5386723 -177028519 - L1ME4a LINE L1 -7 6114 5513 188 313 67 47 chr6 5387389 5387539 -177027703 - MIR SINE MIR -1 261 109 3623 120 25 36 chr6 5387548 5388090 -177027152 - L1MA8 LINE L1 -426 5865 5328 2465 84 0 0 chr6 5388090 5388401 -177026841 - AluY SINE Alu 0 311 1 3623 120 25 36 chr6 5388401 5388549 -177026693 - L1MA8 LINE L1 -963 5328 5180 390 319 24 24 chr6 5389413 5389579 -177025663 - MIR SINE MIR -94 168 3 658 282 35 0 chr6 5389748 5389922 -177025320 - MER58A DNA MER1_type 0 224 45 1825 136 3 69 chr6 5389926 5390258 -177024984 + AluJb SINE Alu 1 310 -2 202 146 0 24 chr6 5390339 5390380 -177024862 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1809 136 6 73 chr6 5390493 5390823 -177024419 - AluJo SINE Alu 0 312 5 2421 129 90 5 chr6 5390835 5391246 -177023996 - Tigger2 DNA MER2_type 0 2718 2273 393 197 15 0 chr6 5391237 5391303 -177023939 - Tigger2 DNA MER2_type -2650 68 2 * 293 351 27 0 chr6 5391344 5391455 -177023787 + MIR SINE MIR 77 190 -72 397 292 34 46 chr6 5396098 5396278 -177018964 - MIR3 SINE MIR -64 144 12 420 291 157 13 chr6 5397004 5397386 -177017856 + L1ME3A LINE L1 2113 2549 -3597 23 0 0 0 chr6 5397469 5397492 -177017750 + AT_rich Low_complexity Low_complexity 1 23 0 265 308 0 0 chr6 5397498 5397576 -177017666 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 259 232 10 61 chr6 5397861 5397960 -177017282 + L1MC4 LINE L1 7291 7384 -658 352 255 75 9 chr6 5398543 5398649 -177016593 + L1MC5 LINE L1 7249 7361 -600 942 215 121 50 chr6 5398966 5399422 -177015820 + L1MC5 LINE L1 7430 7917 -44 1439 262 115 59 chr6 5399673 5400752 -177014490 + L1ME3A LINE L1 3521 4659 -1487 281 298 72 41 chr6 5400912 5401231 -177014011 + L1ME3A LINE L1 4903 5231 -915 468 313 101 2 chr6 5401433 5401690 -177013552 + L1ME3A LINE L1 5351 5628 -538 376 303 28 0 chr6 5401712 5401854 -177013388 + L1ME3A LINE L1 5740 5885 -285 250 259 0 0 chr6 5402169 5402223 -177013019 + Charlie1 DNA MER1_type 2708 2761 0 22 0 0 0 chr6 5402700 5402722 -177012520 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr6 5403142 5403182 -177012060 + AT_rich Low_complexity Low_complexity 1 40 0 233 245 0 0 chr6 5403374 5403423 -177011819 + Charlie1 DNA MER1_type 2713 2761 0 491 221 42 122 chr6 5404502 5404715 -177010527 - LTR41 LTR ERVL -2 771 576 689 169 37 7 chr6 5404975 5405111 -177010131 - LTR41 LTR ERVL -598 175 36 2227 72 11 0 chr6 5406142 5406475 -177008767 - AluY SINE Alu 0 336 1 456 19 0 0 chr6 5406549 5406602 -177008640 + (CA)n Simple_repeat Simple_repeat 2 54 0 1337 219 22 52 chr6 5407905 5408317 -177006925 - MLT2B1 LTR ERVL 0 414 1 288 326 23 38 chr6 5408612 5408744 -177006498 + MIR SINE MIR 20 149 -113 2369 99 0 13 chr6 5410592 5410905 -177004337 - AluSc SINE Alu 0 309 1 594 349 96 41 chr6 5411463 5412245 -177002997 - L2 LINE L2 -430 2884 2060 227 296 62 124 chr6 5412321 5412693 -177002549 - L2 LINE L2 -1610 1704 1356 780 211 83 6 chr6 5413492 5413648 -177001594 + FRAM SINE Alu 1 166 -10 1252 305 88 57 chr6 5414132 5415198 -177000044 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5415859 5415882 -176999360 + (CA)n Simple_repeat Simple_repeat 2 24 0 2869 157 81 13 chr6 5416213 5416734 -176998508 - MER21A LTR ERV1 0 931 376 946 147 187 13 chr6 5416739 5416964 -176998278 - MER21A LTR ERV1 -667 264 1 415 184 112 0 chr6 5417845 5417943 -176997299 - MIR SINE MIR -17 245 137 4170 149 10 18 chr6 5417953 5418001 -176997241 - L1MB3 LINE L1 -2 6181 6134 2582 68 0 0 chr6 5418001 5418312 -176996930 - AluY SINE Alu 0 311 1 4170 149 10 18 chr6 5418312 5418942 -176996300 - L1MB3 LINE L1 -49 6134 5508 247 188 197 51 chr6 5418944 5419061 -176996181 - MIR SINE MIR -97 165 32 2348 105 0 0 chr6 5419237 5419543 -176995699 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5419551 5419578 -176995664 + (CAA)n Simple_repeat Simple_repeat 2 28 0 707 274 0 11 chr6 5420405 5420584 -176994658 - MER5B DNA MER1_type 0 178 2 750 112 0 0 chr6 5420657 5420764 -176994478 + AluSg/x SINE Alu 203 309 0 1800 84 0 16 chr6 5421457 5421706 -176993536 - L1PA6 LINE L1 -55 6099 5855 437 183 104 0 chr6 5421709 5421815 -176993427 + MLT2B2 LTR ERVL 351 465 -50 1295 132 51 180 chr6 5422533 5422888 -176992354 - AluJo SINE Alu -3 309 1 2182 92 0 24 chr6 5424779 5425094 -176990148 - AluY SINE Alu 0 311 1 369 258 22 82 chr6 5425375 5425557 -176989685 + L2 LINE L2 3118 3288 -25 334 298 37 62 chr6 5426160 5426321 -176988921 + MIR3 SINE MIR 16 172 -36 1975 150 10 0 chr6 5426385 5426691 -176988551 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5426691 5426797 -176988445 - L2 LINE L2 -14 3299 3194 2251 94 7 3 chr6 5426902 5427199 -176988043 + AluSg SINE Alu 1 298 -12 261 277 53 0 chr6 5427848 5427942 -176987300 + L2 LINE L2 3164 3262 -10 1016 286 61 61 chr6 5430152 5430778 -176984464 - HAL1 LINE L1 -30 2477 1852 368 255 68 19 chr6 5430826 5430987 -176984255 - LTR67 LTR ERVL -8 549 381 226 344 33 11 chr6 5431245 5431335 -176983907 - LTR67 LTR ERVL -367 190 99 279 54 0 0 chr6 5431417 5431454 -176983788 + (TG)n Simple_repeat Simple_repeat 2 38 0 1808 182 0 3 chr6 5431494 5431790 -176983452 - AluSx SINE Alu -17 295 1 342 233 186 16 chr6 5431887 5432016 -176983226 - L1MB8 LINE L1 -64 6114 5964 340 129 0 32 chr6 5432016 5432078 -176983164 - Alu SINE Alu -9 293 234 3063 189 89 101 chr6 5432078 5433388 -176981854 - L1ME1 LINE L1 -196 5970 4513 534 236 152 12 chr6 5433388 5433553 -176981689 - MER58A DNA MER1_type 0 224 37 3063 189 89 101 chr6 5433553 5433800 -176981442 - L1ME1 LINE L1 -1653 4513 4264 366 211 46 28 chr6 5433784 5433893 -176981349 - HAL1 LINE L1 -1043 1464 1354 * 198 204 0 45 chr6 5434551 5434595 -176980647 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5435238 5435261 -176979981 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 298 341 112 18 chr6 5435338 5435561 -176979681 + L3b LINE CR1 1272 1515 -68 249 322 99 16 chr6 5436824 5436945 -176978297 + L2 LINE L2 3160 3290 -23 231 234 125 16 chr6 5437131 5437259 -176977983 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5437638 5437678 -176977564 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 369 240 10 48 chr6 5438176 5438280 -176976962 + MIR3 SINE MIR 109 208 0 251 159 0 0 chr6 5438482 5438526 -176976716 - L3 LINE CR1 -8 1569 1526 * 256 178 0 0 chr6 5438487 5438532 -176976710 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5438804 5438830 -176976412 + (A)n Simple_repeat Simple_repeat 1 26 0 682 340 31 12 chr6 5440265 5440521 -176974721 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5440524 5440545 -176974697 + AT_rich Low_complexity Low_complexity 1 21 0 1281 159 0 5 chr6 5440605 5440903 -176974339 - MER2 DNA MER2_type 0 345 2 816 157 0 24 chr6 5442293 5442459 -176972783 - L1MC3 LINE L1 -8 7777 7616 25 31 0 0 chr6 5442748 5442780 -176972462 + AT_rich Low_complexity Low_complexity 1 32 0 2151 136 3 0 chr6 5444259 5444568 -176970674 - AluSx SINE Alu -2 310 1 345 223 136 82 chr6 5445616 5445800 -176969442 + MIR SINE MIR 21 214 -48 332 140 0 0 chr6 5446990 5447050 -176968192 + FRAM/FAM SINE Alu 28 75 -100 236 234 52 0 chr6 5447131 5447208 -176968034 - L1MC4 LINE L1 -1350 6692 6612 671 159 26 0 chr6 5447208 5447359 -176967883 + (TA)n Simple_repeat Simple_repeat 2 156 0 32 26 0 0 chr6 5447371 5447410 -176967832 + AT_rich Low_complexity Low_complexity 1 39 0 2251 76 3 10 chr6 5447763 5448051 -176967191 + AluSc SINE Alu 1 286 -23 232 184 0 0 chr6 5448583 5448621 -176966621 - U6 snRNA snRNA -69 38 1 1344 179 105 10 chr6 5448630 5448926 -176966316 + MER7A DNA MER2_type 21 342 -4 2110 133 0 0 chr6 5449453 5449739 -176965503 - AluSx SINE Alu -26 286 1 2698 153 24 8 chr6 5451517 5452021 -176963221 + L1MC1 LINE L1 5822 6333 0 448 253 48 20 chr6 5452098 5452244 -176962998 - L1MD3 LINE L1 -215 7780 7631 5957 211 84 66 chr6 5452244 5453582 -176961660 - L1MC4a LINE L1 -288 7520 6122 1876 131 0 4 chr6 5453582 5453850 -176961392 - AluSx SINE Alu -30 282 16 5957 211 84 66 chr6 5453850 5454735 -176960507 - L1MC4a LINE L1 -1686 6122 5255 392 318 39 37 chr6 5454842 5455007 -176960235 - L1 LINE L1 -3325 2821 2662 240 35 0 0 chr6 5455007 5455036 -176960206 + (TG)n Simple_repeat Simple_repeat 2 30 0 392 318 39 37 chr6 5455036 5455171 -176960071 - L1 LINE L1 -3484 2662 2529 234 280 31 44 chr6 5455247 5455472 -176959770 - L1 LINE L1 -3687 2459 2238 272 317 86 31 chr6 5455822 5456301 -176958941 - HAL1b LINE L1 -510 838 334 323 347 52 21 chr6 5456362 5456555 -176958687 - HAL1 LINE L1 -1218 1289 1091 212 222 14 42 chr6 5456607 5456679 -176958563 + T-rich Low_complexity Low_complexity 2 71 0 201 39 0 0 chr6 5457410 5457436 -176957806 + (CCTG)n Simple_repeat Simple_repeat 3 28 0 32 0 0 0 chr6 5457896 5457928 -176957314 + AT_rich Low_complexity Low_complexity 1 32 0 408 294 94 0 chr6 5458288 5458468 -176956774 - MIR SINE MIR 0 262 66 191 300 25 25 chr6 5458471 5458551 -176956691 - L2 LINE L2 -37 3276 3197 1547 156 51 0 chr6 5459109 5459165 -176956077 - MER46B DNA MER2_type -2495 236 184 2250 93 3 46 chr6 5459165 5459489 -176955753 - AluSg SINE Alu 0 310 1 1547 156 51 0 chr6 5459489 5459727 -176955515 - MER46B DNA MER2_type -2547 184 52 2422 71 0 16 chr6 5459870 5460180 -176955062 - AluY SINE Alu -6 305 1 264 200 0 0 chr6 5460609 5460669 -176954573 - L1ME3 LINE L1 -8 6154 6095 * 1795 237 94 22 chr6 5460667 5461339 -176953903 - L1ME1 LINE L1 -21 6143 5435 288 0 0 0 chr6 5461432 5461464 -176953778 + (TA)n Simple_repeat Simple_repeat 1 32 0 284 188 72 0 chr6 5461464 5461533 -176953709 + L1ME LINE L1 5368 5441 -723 307 252 47 16 chr6 5461709 5461836 -176953406 - L1MEd LINE L1 -5980 139 9 229 363 48 16 chr6 5462872 5462996 -176952246 + MIR3 SINE MIR 14 141 -67 2128 101 3 14 chr6 5463563 5463860 -176951382 + AluSc SINE Alu 1 294 -15 2141 119 0 28 chr6 5464538 5464858 -176950384 - AluSx SINE Alu -1 311 1 224 265 0 0 chr6 5465013 5465062 -176950180 + (TAA)n Simple_repeat Simple_repeat 1 49 0 412 322 66 0 chr6 5465258 5465410 -176949832 - MIR SINE MIR -77 185 24 1019 146 0 13 chr6 5465517 5465675 -176949567 + AluJo SINE Alu 127 282 -30 261 0 0 0 chr6 5465678 5465707 -176949535 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 617 220 125 26 chr6 5466578 5466842 -176948400 + LTR16A LTR ERVL 83 372 -78 2693 215 78 35 chr6 5468645 5469208 -176946034 - L1ME1 LINE L1 0 6235 5698 2256 101 0 13 chr6 5469208 5469514 -176945728 - AluSg1 SINE Alu -7 302 1 2693 215 78 35 chr6 5469514 5469695 -176945547 - L1ME1 LINE L1 -537 5698 5526 2354 108 0 6 chr6 5469695 5470009 -176945233 - AluSx SINE Alu 0 312 1 2693 215 78 35 chr6 5470009 5470104 -176945138 - L1ME1 LINE L1 -709 5526 5437 1662 180 30 3 chr6 5470104 5470399 -176944843 - AluJb SINE Alu -9 303 1 2693 215 78 35 chr6 5470399 5471012 -176944230 - L1ME1 LINE L1 -798 5437 4726 * 3944 268 99 33 chr6 5470995 5471618 -176943624 - L1ME1 LINE L1 -4123 2273 1693 1764 156 0 36 chr6 5471618 5471920 -176943322 - AluJb SINE Alu -21 291 1 3944 268 99 33 chr6 5471920 5473188 -176942054 - L1ME1 LINE L1 -4703 1693 256 242 299 62 0 chr6 5473191 5473273 -176941969 - L1ME1 LINE L1 -6209 187 112 216 0 0 0 chr6 5473273 5473297 -176941945 + (TTA)n Simple_repeat Simple_repeat 1 24 0 242 299 62 0 chr6 5473297 5473358 -176941884 - L1ME1 LINE L1 -6284 112 35 2061 116 101 18 chr6 5474338 5474674 -176940568 - THE1B LTR MaLR 0 364 1 7263 140 22 18 chr6 5474674 5476318 -176938924 - THE1B-int LTR MaLR 0 1651 1 2085 108 108 21 chr6 5476318 5476653 -176938589 - THE1B LTR MaLR 0 364 1 380 283 53 84 chr6 5476865 5477091 -176938151 + MIR SINE MIR 39 257 -5 565 315 91 17 chr6 5477180 5477412 -176937830 - MIR SINE MIR 0 262 14 553 292 21 26 chr6 5478571 5478957 -176936285 + L1MC4a LINE L1 5534 5982 -1826 280 299 17 17 chr6 5480230 5480347 -176934895 - MIR SINE MIR -99 163 47 2069 150 0 0 chr6 5480961 5481254 -176933988 - AluSx SINE Alu -19 293 1 735 90 27 0 chr6 5481411 5481522 -176933720 - L1MA5 LINE L1 0 6300 6187 694 182 20 0 chr6 5481562 5481710 -176933532 + L1 LINE L1 4965 5115 -1031 28 29 0 0 chr6 5482717 5482752 -176932490 + AT_rich Low_complexity Low_complexity 1 35 0 994 219 22 75 chr6 5483218 5483579 -176931663 + L1ME1 LINE L1 5802 6143 -23 247 263 11 11 chr6 5483606 5483701 -176931541 + MER113 DNA MER1_type? 139 233 -288 1740 162 10 26 chr6 5483852 5484160 -176931082 + AluJo SINE Alu 1 303 -9 762 169 21 21 chr6 5484024 5484166 -176931076 + AluJo/FRAM SINE Alu 168 309 -3 328 311 41 16 chr6 5484170 5484292 -176930950 + MIR SINE MIR 20 144 -118 30 27 0 0 chr6 5484880 5484917 -176930325 + AT_rich Low_complexity Low_complexity 1 37 0 47 0 0 0 chr6 5486319 5486366 -176928876 + AT_rich Low_complexity Low_complexity 1 47 0 2051 87 11 0 chr6 5486391 5486656 -176928586 + AluSx SINE Alu 29 296 -16 620 43 98 0 chr6 5486656 5486819 -176928423 + (TA)n Simple_repeat Simple_repeat 1 179 0 25 0 0 0 chr6 5486844 5486869 -176928373 + AT_rich Low_complexity Low_complexity 1 25 0 463 289 34 39 chr6 5487462 5487666 -176927576 + MIR SINE MIR 46 248 -14 183 42 0 0 chr6 5488431 5488455 -176926787 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2094 115 0 7 chr6 5488455 5488742 -176926500 - AluSx SINE Alu -27 285 1 22 0 0 0 chr6 5488742 5488764 -176926478 + AT_rich Low_complexity Low_complexity 1 22 0 267 279 29 10 chr6 5489045 5489149 -176926093 + CT-rich Low_complexity Low_complexity 2 107 0 305 324 176 9 chr6 5489260 5489482 -176925760 - MIR SINE MIR -1 261 3 186 349 40 84 chr6 5490774 5491022 -176924220 - L2 LINE L2 -27 3245 3009 306 283 116 52 chr6 5491022 5491195 -176924047 - MER5A DNA MER1_type -1 188 5 1375 202 27 34 chr6 5491228 5491666 -176923576 - L1ME1 LINE L1 -4 6162 5626 947 259 47 20 chr6 5491656 5492000 -176923242 - L1ME LINE L1 -3479 2601 2249 * 1039 268 97 67 chr6 5491997 5492973 -176922269 - L1ME LINE L1 -4310 1770 737 1451 149 40 4 chr6 5492973 5493201 -176922041 - MER46A DNA MER2_type 0 236 1 1039 268 97 67 chr6 5493201 5493942 -176921300 - L1ME LINE L1 -5343 737 20 252 214 29 14 chr6 5494146 5494216 -176921026 + CT-rich Low_complexity Low_complexity 3 73 0 261 253 74 74 chr6 5494398 5494734 -176920508 - L1ME4a LINE L1 -1 6120 5785 296 303 181 21 chr6 5494772 5494960 -176920282 - L1ME4a LINE L1 -422 5699 5482 716 174 0 58 chr6 5495012 5495150 -176920092 - FLAM_A SINE Alu -2 131 2 2325 113 0 0 chr6 5495238 5495549 -176919693 - AluSx SINE Alu -1 311 1 708 299 86 30 chr6 5495806 5496281 -176918961 - L1ME3A LINE L1 -230 5940 5439 867 171 35 29 chr6 5496281 5496451 -176918791 + AluJb SINE Alu 135 305 -7 21 36 0 0 chr6 5496518 5496546 -176918696 + AT_rich Low_complexity Low_complexity 1 28 0 236 292 35 21 chr6 5496551 5496695 -176918547 - L1ME3A LINE L1 -813 5333 5188 463 251 135 65 chr6 5497683 5498086 -176917156 + MLT1H LTR MaLR 30 547 -2 348 24 0 0 chr6 5498420 5498461 -176916781 + (TG)n Simple_repeat Simple_repeat 1 41 0 2411 95 0 0 chr6 5498514 5498820 -176916422 + AluSg SINE Alu 1 306 -4 198 0 0 0 chr6 5498820 5498842 -176916400 + (GA)n Simple_repeat Simple_repeat 2 23 0 574 192 0 10 chr6 5498902 5499006 -176916236 + L2 LINE L2 3189 3291 -22 504 235 90 36 chr6 5499194 5499360 -176915882 + MIR3 SINE MIR 11 185 -23 226 288 137 0 chr6 5499941 5500080 -176915162 + MER103 DNA DNA 7 164 -2 2432 69 0 13 chr6 5500245 5500550 -176914692 + AluY SINE Alu 1 301 -10 182 371 96 20 chr6 5500843 5501040 -176914202 - L2 LINE L2 -93 3179 2968 462 248 0 9 chr6 5501057 5501170 -176914072 - L1MA9 LINE L1 -38 6274 6163 191 360 126 18 chr6 5501396 5501618 -176913624 - L2 LINE L2 -562 2752 2507 340 250 0 0 chr6 5501973 5502037 -176913205 + MER8 DNA MER2_type 150 213 -26 443 338 87 51 chr6 5502105 5502573 -176912669 - L2 LINE L2 -55 3217 2725 1126 226 110 18 chr6 5502709 5503099 -176912143 - L1MC4a LINE L1 -1804 6004 5579 262 340 172 0 chr6 5503139 5503377 -176911865 - L2 LINE L2 -812 2502 2224 2342 102 0 13 chr6 5503394 5503709 -176911533 + AluSx SINE Alu 1 311 -1 202 135 27 0 chr6 5503895 5503932 -176911310 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1430 157 0 25 chr6 5503959 5504201 -176911041 - MER46A DNA MER2_type 0 236 1 1557 183 8 0 chr6 5504224 5504459 -176910783 + MER8 DNA MER2_type 3 239 0 933 231 74 26 chr6 5504718 5505029 -176910213 - MER58B DNA MER1_type -8 333 8 184 174 65 0 chr6 5505037 5505083 -176910159 - L2 LINE L2 -310 2962 2914 250 350 60 0 chr6 5506879 5506979 -176908263 + L2 LINE L2 3201 3306 -7 2182 92 0 24 chr6 5508656 5508971 -176906271 - AluY SINE Alu 0 311 1 369 258 22 82 chr6 5509252 5509434 -176905808 + L2 LINE L2 3118 3288 -25 334 298 37 62 chr6 5510037 5510198 -176905044 + MIR3 SINE MIR 16 172 -36 1975 150 10 0 chr6 5510262 5510568 -176904674 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5510568 5510674 -176904568 - L2 LINE L2 -14 3299 3194 2251 94 7 3 chr6 5510779 5511076 -176904166 + AluSg SINE Alu 1 298 -12 261 277 53 0 chr6 5511725 5511819 -176903423 + L2 LINE L2 3164 3262 -10 1016 286 61 61 chr6 5514029 5514655 -176900587 - HAL1 LINE L1 -30 2477 1852 368 255 68 19 chr6 5514703 5514864 -176900378 - LTR67 LTR ERVL -8 549 381 226 344 33 11 chr6 5515122 5515212 -176900030 - LTR67 LTR ERVL -367 190 99 279 54 0 0 chr6 5515294 5515331 -176899911 + (TG)n Simple_repeat Simple_repeat 2 38 0 1808 182 0 3 chr6 5515371 5515667 -176899575 - AluSx SINE Alu -17 295 1 342 233 186 16 chr6 5515764 5515893 -176899349 - L1MB8 LINE L1 -64 6114 5964 340 129 0 32 chr6 5515893 5515955 -176899287 - Alu SINE Alu -9 293 234 3063 189 89 101 chr6 5515955 5517265 -176897977 - L1ME1 LINE L1 -196 5970 4513 534 236 152 12 chr6 5517265 5517430 -176897812 - MER58A DNA MER1_type 0 224 37 3063 189 89 101 chr6 5517430 5517677 -176897565 - L1ME1 LINE L1 -1653 4513 4264 366 211 46 28 chr6 5517661 5517770 -176897472 - HAL1 LINE L1 -1043 1464 1354 * 196 204 0 45 chr6 5518428 5518472 -176896770 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5519115 5519138 -176896104 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 290 341 112 18 chr6 5519215 5519438 -176895804 + L3b LINE CR1 1272 1515 -68 311 314 108 10 chr6 5520720 5520822 -176894420 + L2 LINE L2 3138 3249 -23 236 234 125 16 chr6 5521008 5521136 -176894106 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5521515 5521555 -176893687 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 363 240 10 48 chr6 5522053 5522157 -176893085 + MIR3 SINE MIR 109 208 0 252 159 0 0 chr6 5522359 5522403 -176892839 - L3 LINE CR1 -8 1569 1526 * 259 178 0 0 chr6 5522364 5522409 -176892833 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5522681 5522707 -176892535 + (A)n Simple_repeat Simple_repeat 1 26 0 657 340 31 12 chr6 5524142 5524398 -176890844 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5524401 5524422 -176890820 + AT_rich Low_complexity Low_complexity 1 21 0 1385 159 0 5 chr6 5524482 5524780 -176890462 - MER2 DNA MER2_type 0 345 2 209 265 0 0 chr6 5526747 5526796 -176888446 + GA-rich Low_complexity Low_complexity 5 53 0 2551 70 0 3 chr6 5527572 5527884 -176887358 + AluY SINE Alu 1 311 0 202 239 0 0 chr6 5528559 5528605 -176886637 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2089 154 14 61 chr6 5528719 5528991 -176886251 - MER7A DNA MER2_type -2692 346 96 2204 97 10 0 chr6 5528991 5529280 -176885962 - AluSg SINE Alu -13 297 6 2089 154 14 61 chr6 5529280 5529370 -176885872 - MER7A DNA MER2_type -2942 96 3 292 311 185 12 chr6 5529832 5530123 -176885119 + L2 LINE L2 2712 3037 -276 343 197 94 60 chr6 5530290 5530407 -176884835 + MLT1L LTR MaLR 147 267 -348 330 236 85 9 chr6 5530544 5530650 -176884592 + MLT1L LTR MaLR 498 611 -4 544 273 42 42 chr6 5530655 5530871 -176884371 + L2 LINE L2 3098 3313 0 204 234 0 0 chr6 5530871 5530918 -176884324 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 677 222 74 39 chr6 5531857 5532060 -176883182 + MIR SINE MIR 5 214 -48 1917 134 0 3 chr6 5532064 5532377 -176882865 + AluJo SINE Alu 1 312 0 312 273 79 52 chr6 5532701 5532885 -176882357 - MIR SINE MIR -64 198 11 1229 289 150 6 chr6 5534299 5534786 -176880456 + L3 LINE CR1 527 1083 -494 314 215 116 70 chr6 5536499 5536671 -176878571 + MER104 DNA Tc2 1 180 0 320 306 88 69 chr6 5536874 5537135 -176878107 - L2 LINE L2 -22 3250 2985 253 151 0 38 chr6 5537404 5537457 -176877785 + LTR16C LTR ERVL 185 235 -256 354 267 68 25 chr6 5537517 5537678 -176877564 + LTR16C LTR ERVL 320 487 -4 1681 172 44 0 chr6 5537724 5538037 -176877205 + AluSx SINE Alu 1 325 0 850 149 0 27 chr6 5538315 5538463 -176876779 + FRAM SINE Alu 32 175 -1 902 178 86 25 chr6 5538709 5538906 -176876336 + MER3 DNA MER1_type 1 209 0 241 277 108 0 chr6 5539546 5539629 -176875613 + MIR SINE MIR 115 206 -56 728 238 109 5 chr6 5539890 5540083 -176875159 - MER58C DNA MER1_type -2 213 1 749 257 30 0 chr6 5540091 5540293 -176874949 - MER3 DNA MER1_type -1 208 1 505 273 120 19 chr6 5540293 5540493 -176874749 + MIR SINE MIR 37 260 -2 28 0 0 0 chr6 5540543 5540571 -176874671 + AT_rich Low_complexity Low_complexity 1 28 0 482 295 29 70 chr6 5541737 5541981 -176873261 - MIR SINE MIR -8 254 21 192 285 131 22 chr6 5541993 5542130 -176873112 + MIR3 SINE MIR 50 201 -7 240 250 53 13 chr6 5542938 5543014 -176872228 - L2 LINE L2 -921 2393 2315 803 240 6 95 chr6 5543225 5543499 -176871743 - L2 LINE L2 -4 3309 3065 2053 144 0 0 chr6 5543499 5543797 -176871445 + AluSx SINE Alu 1 298 -14 803 240 6 95 chr6 5543797 5543839 -176871403 - L2 LINE L2 -248 3065 3021 2305 260 28 5 chr6 5544226 5544838 -176870404 - L1ME1 LINE L1 -2 6164 5539 1964 227 40 62 chr6 5544838 5545384 -176869858 + MLT1F LTR MaLR 9 542 0 815 236 29 12 chr6 5545386 5545627 -176869615 - L1ME1 LINE L1 -633 5529 5285 292 243 43 14 chr6 5546874 5546944 -176868298 - L2 LINE L2 -6 3307 3236 251 324 14 0 chr6 5546981 5547055 -176868187 - L2 LINE L2 -8 3305 3231 1212 115 0 0 chr6 5547401 5547566 -176867676 + AluSq SINE Alu 148 312 -1 565 296 17 48 chr6 5547879 5548109 -176867133 + MIR SINE MIR 30 252 -10 195 42 0 0 chr6 5548443 5548467 -176866775 + (T)n Simple_repeat Simple_repeat 1 24 0 2090 152 19 14 chr6 5550785 5551147 -176864095 - MLT1B LTR MaLR 0 390 27 718 217 0 8 chr6 5551181 5551310 -176863932 - FLAM_A SINE Alu -5 128 1 22 56 0 0 chr6 5552066 5552102 -176863140 + AT_rich Low_complexity Low_complexity 1 36 0 321 286 125 0 chr6 5552796 5552908 -176862334 + L2 LINE L2 3139 3264 -8 1766 83 0 0 chr6 5553231 5553448 -176861794 - AluSg/x SINE Alu -18 294 78 362 293 73 20 chr6 5553784 5553934 -176861308 + MIR3 SINE MIR 39 196 -12 204 97 0 0 chr6 5554504 5554535 -176860707 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 231 163 23 23 chr6 5554959 5555002 -176860240 + MIR SINE MIR 15 57 -205 342 0 0 0 chr6 5555261 5555299 -176859943 + (GA)n Simple_repeat Simple_repeat 1 38 0 204 262 87 58 chr6 5555567 5555670 -176859572 + MIR SINE MIR 139 244 -18 2073 114 7 0 chr6 5555804 5556122 -176859120 - AluSx SINE Alu 0 320 1 49 52 0 0 chr6 5557487 5557564 -176857678 + AT_rich Low_complexity Low_complexity 1 77 0 927 231 126 0 chr6 5557564 5557701 -176857541 + L1MA9 LINE L1 6000 6118 -194 297 0 0 0 chr6 5557701 5557734 -176857508 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr6 5557733 5557762 -176857480 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 927 231 126 0 chr6 5557734 5557871 -176857371 + L1MA9 LINE L1 6118 6277 -35 35 0 0 0 chr6 5557876 5557911 -176857331 + AT_rich Low_complexity Low_complexity 1 35 0 1987 228 56 22 chr6 5558282 5558909 -176856333 - MER114 LTR ERV 0 648 1 707 188 160 14 chr6 5559151 5559295 -176855947 - AluJb SINE Alu -12 300 136 352 250 0 0 chr6 5559423 5559495 -176855747 - MER94 DNA DNA -62 72 1 1268 63 0 2 chr6 5559795 5559986 -176855256 - MER11C LTR ERVK -790 281 1 22 56 0 0 chr6 5560186 5560222 -176855020 + AT_rich Low_complexity Low_complexity 1 36 0 701 203 26 46 chr6 5563250 5563403 -176851839 - MER58B DNA MER1_type -1 340 191 773 350 52 11 chr6 5566060 5566426 -176848816 - L3 LINE CR1 -823 754 374 406 248 80 16 chr6 5566441 5566566 -176848676 - MLT1K LTR MaLR -2 586 454 255 213 13 93 chr6 5566567 5566642 -176848600 - MIR SINE MIR -120 88 20 246 326 12 0 chr6 5566910 5566996 -176848246 - L2 LINE L2 0 3272 3186 195 224 45 60 chr6 5567068 5567135 -176848107 - L2 LINE L2 0 3313 3248 206 336 128 38 chr6 5567273 5567618 -176847624 - L2 LINE L2 -557 2757 2382 * 305 216 99 27 chr6 5567590 5567701 -176847541 + L2 LINE L2 3150 3268 -4 180 0 0 0 chr6 5568416 5568436 -176846806 + (TA)n Simple_repeat Simple_repeat 2 21 0 1402 159 18 57 chr6 5569096 5569379 -176845863 - AluJb SINE Alu -17 295 24 2159 147 0 0 chr6 5569743 5570055 -176845187 - AluSx SINE Alu 0 312 1 518 278 67 66 chr6 5570290 5570624 -176844618 - MLT1I LTR MaLR -7 443 71 201 320 102 61 chr6 5570810 5571007 -176844235 + MIR3 SINE MIR 4 208 0 529 154 83 0 chr6 5571548 5571653 -176843589 + MER33 DNA MER1_type 1 103 -97 2099 103 3 10 chr6 5571660 5571952 -176843290 + AluSx SINE Alu 6 295 -17 812 151 49 27 chr6 5571980 5572165 -176843077 + MER33 DNA MER1_type 133 321 -42 22 0 0 0 chr6 5573088 5573110 -176842132 + AT_rich Low_complexity Low_complexity 1 22 0 266 294 95 87 chr6 5573586 5573817 -176841425 - L2 LINE L2 -1395 1919 1687 26 0 0 0 chr6 5574040 5574066 -176841176 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 5574529 5574559 -176840683 + AT_rich Low_complexity Low_complexity 1 30 0 245 298 75 11 chr6 5574935 5575029 -176840213 - L1MC/D LINE L1 -2268 5540 5441 29 0 0 0 chr6 5575429 5575458 -176839784 + AT_rich Low_complexity Low_complexity 1 29 0 252 263 105 42 chr6 5575760 5575855 -176839387 + L2 LINE L2 3210 3310 -3 303 198 18 90 chr6 5576374 5576485 -176838757 - MLT1J2 LTR MaLR -2 448 346 248 237 22 74 chr6 5576574 5576709 -176838533 - MLT1J1 LTR MaLR -281 165 38 879 248 57 5 chr6 5578922 5579132 -176836110 - MIR SINE MIR -25 237 17 2201 132 7 0 chr6 5580933 5581243 -176833999 - AluSq SINE Alu -1 312 1 21 36 0 0 chr6 5582510 5582538 -176832704 + AT_rich Low_complexity Low_complexity 1 28 0 653 170 0 10 chr6 5582538 5582638 -176832604 - FLAM_A SINE Alu -26 116 18 248 294 0 15 chr6 5582851 5582919 -176832323 + MIR SINE MIR 18 84 -178 660 247 52 81 chr6 5583142 5583413 -176831829 + MLT1L LTR MaLR 240 598 -9 412 257 71 0 chr6 5583415 5583528 -176831714 + MIR SINE MIR 78 198 -64 2300 95 0 0 chr6 5583638 5583932 -176831310 - AluSc SINE Alu -15 294 1 956 253 179 38 chr6 5584052 5584444 -176830798 + MLT1H LTR MaLR 100 546 -3 1760 274 6 4 chr6 5584480 5584961 -176830281 + L1MC4 LINE L1 7413 7894 -148 259 205 21 6 chr6 5584969 5585311 -176829931 + (TA)n Simple_repeat Simple_repeat 1 347 0 333 322 39 71 chr6 5585312 5585567 -176829675 - MLT1L LTR MaLR -201 414 168 2127 109 0 3 chr6 5586796 5587110 -176828132 + AluSg SINE Alu 1 313 0 190 107 0 0 chr6 5587082 5587139 -176828103 + (TAA)n Simple_repeat Simple_repeat 1 57 0 548 313 53 40 chr6 5587817 5588117 -176827125 - L2 LINE L2 -14 3299 2996 262 305 11 21 chr6 5588337 5588432 -176826810 - MIR3 SINE MIR -9 199 106 2692 177 59 4 chr6 5588588 5589097 -176826145 - L1MB4 LINE L1 -2 6178 5642 345 208 0 0 chr6 5589125 5589202 -176826040 + (CA)n Simple_repeat Simple_repeat 2 78 0 3373 186 10 46 chr6 5589216 5590323 -176824919 - L1MB4 LINE L1 -542 5632 3689 2192 77 70 0 chr6 5590371 5590657 -176824585 - AluY SINE Alu -5 306 1 215 341 0 0 chr6 5592177 5592259 -176822983 + CT-rich Low_complexity Low_complexity 3 84 0 2332 76 0 17 chr6 5593534 5593711 -176821531 - AluY SINE Alu -14 297 126 186 43 0 0 chr6 5593711 5593734 -176821508 + (TA)n Simple_repeat Simple_repeat 1 23 0 2332 76 0 17 chr6 5593734 5593858 -176821384 - AluY SINE Alu -185 126 1 479 257 18 0 chr6 5595493 5595606 -176819636 + MER5C DNA MER1_type 9 123 -201 1495 202 73 41 chr6 5595651 5595970 -176819272 - L1ME1 LINE L1 -5 6161 5854 4398 133 1 22 chr6 5595970 5596618 -176818624 - MER41B LTR ERV1 0 635 1 1495 202 73 41 chr6 5596618 5596798 -176818444 - L1ME1 LINE L1 -312 5854 5595 1097 207 58 5 chr6 5596798 5597006 -176818236 - MER20 DNA MER1_type 0 219 1 1495 202 73 41 chr6 5597006 5597093 -176818149 - L1ME1 LINE L1 -571 5595 5512 1309 203 16 10 chr6 5597087 5597398 -176817844 - L1MB4 LINE L1 -3178 2968 2656 * 2003 113 39 0 chr6 5597704 5597987 -176817255 - AluSg SINE Alu -16 294 1 943 285 188 4 chr6 5598216 5598710 -176816532 - MLT1E LTR MaLR -8 585 1 259 24 24 24 chr6 5599751 5599792 -176815450 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 2850 52 0 0 chr6 5599792 5600137 -176815105 - L1PA8 LINE L1 -24 6148 5804 2163 114 0 0 chr6 5600172 5600453 -176814789 + AluSq SINE Alu 1 281 -32 2064 88 26 4 chr6 5600557 5600830 -176814412 - AluSg SINE Alu -31 279 1 525 263 35 77 chr6 5600831 5601210 -176814032 - L1MCc LINE L1 -4889 1534 1459 2129 124 0 0 chr6 5601210 5601532 -176813710 - AluSx SINE Alu 0 322 1 525 263 35 77 chr6 5601532 5601803 -176813439 - L1MCc LINE L1 -4964 1459 1178 2952 71 3 0 chr6 5602201 5602555 -176812687 - THE1A LTR MaLR 0 355 1 1466 211 70 63 chr6 5603270 5603463 -176811779 - MLT1D LTR MaLR -2 503 313 2268 59 0 4 chr6 5603463 5603735 -176811507 - L1PA6 LINE L1 0 6154 5884 1466 211 70 63 chr6 5603735 5603939 -176811303 - MLT1D LTR MaLR -192 313 103 400 190 10 80 chr6 5603990 5604090 -176811152 - MLT1D LTR MaLR -410 95 3 1428 181 63 112 chr6 5604092 5604502 -176810740 - MLT1D-int LTR MaLR 0 1371 982 1362 191 40 27 chr6 5604547 5604846 -176810396 - AluJb SINE Alu -4 308 6 2785 208 58 88 chr6 5604945 5605856 -176809386 - MLT1D-int LTR MaLR -486 885 2 2182 208 62 15 chr6 5605858 5606338 -176808904 - MLT1D LTR MaLR -1 504 2 202 333 0 13 chr6 5607675 5607753 -176807489 - MIR SINE MIR -73 189 113 702 166 159 7 chr6 5607992 5608143 -176807099 - MER5A DNA MER1_type -6 183 10 490 305 81 20 chr6 5608894 5609140 -176806102 - MIR SINE MIR -1 261 1 2289 138 14 11 chr6 5609260 5609614 -176805628 + THE1A LTR MaLR 1 355 0 281 242 0 0 chr6 5610222 5610288 -176804954 + MIR SINE MIR 197 262 0 228 67 0 0 chr6 5610958 5610988 -176804254 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 274 242 0 0 chr6 5611475 5611541 -176803701 - MLT1L LTR MaLR -1 614 549 463 276 112 12 chr6 5611589 5611759 -176803483 - MLT1L LTR MaLR -204 411 225 1830 67 0 59 chr6 5612799 5613090 -176802152 - AluY SINE Alu 0 318 43 1780 157 10 16 chr6 5613401 5613714 -176801528 + AluJo SINE Alu 1 311 -1 655 307 84 21 chr6 5613918 5614299 -176800943 + L1M4 LINE L1 4615 5019 -1127 1469 294 25 23 chr6 5614481 5615128 -176800114 - L1M4 LINE L1 -2123 4023 3373 2048 142 0 6 chr6 5615128 5615439 -176799803 + AluSx SINE Alu 1 309 -3 1469 294 25 23 chr6 5615439 5615477 -176799765 - L1M4 LINE L1 -2773 3373 3337 21 36 0 0 chr6 5615521 5615549 -176799693 + AT_rich Low_complexity Low_complexity 1 28 0 498 311 81 43 chr6 5615577 5616280 -176798962 - L1MEc LINE L1 -734 1609 443 297 0 0 0 chr6 5616979 5617012 -176798230 + (CA)n Simple_repeat Simple_repeat 2 34 0 1359 111 11 0 chr6 5617077 5617267 -176797975 - AluSq SINE Alu -1 312 121 3342 122 29 10 chr6 5617286 5617796 -176797446 - LTR9B LTR ERV1 -83 561 42 17046 93 20 10 chr6 5617797 5620132 -176795110 - HUERS-P3b LTR ERV1 -1 7417 4984 396 227 118 17 chr6 5620467 5620586 -176794656 + L2 LINE L2 3142 3272 0 248 238 20 30 chr6 5620757 5620858 -176794384 + (CAGAGA)n Simple_repeat Simple_repeat 2 101 0 230 368 98 0 chr6 5621021 5621195 -176794047 - MIR3 SINE MIR -11 197 7 1757 118 18 4 chr6 5621575 5621854 -176793388 + L1M3 LINE L1 5290 5572 -611 840 226 0 0 chr6 5621880 5622035 -176793207 - LTR8 LTR ERV1 -536 155 1 6099 90 4 5 chr6 5622035 5622837 -176792405 + HUERS-P3b LTR ERV1 3073 3873 -3545 1866 98 11 11 chr6 5622829 5623104 -176792138 + HUERS-P3b LTR ERV1 4713 4987 -2431 * 2708 122 48 24 chr6 5625094 5625512 -176789730 - MSTA LTR MaLR 0 428 1 429 290 9 0 chr6 5625741 5625848 -176789394 + MER5A DNA MER1_type 82 189 0 272 306 90 9 chr6 5626144 5626255 -176788987 - L2 LINE L2 0 3272 3153 230 218 0 18 chr6 5626316 5626371 -176788871 - MIR SINE MIR 0 262 209 201 292 250 7 chr6 5626449 5626593 -176788649 - MIR SINE MIR -62 200 22 1978 85 31 4 chr6 5627143 5627421 -176787821 - AluY SINE Alu 0 300 16 268 336 9 0 chr6 5627464 5627574 -176787668 + L1ME2 LINE L1 5709 5819 -1989 2191 216 147 21 chr6 5627610 5627800 -176787442 + MER82 DNA MER2_type 1 166 -487 1175 221 34 17 chr6 5627800 5628035 -176787207 + MER8 DNA MER2_type 1 239 0 2191 216 147 21 chr6 5628035 5628424 -176786818 + MER82 DNA MER2_type 166 653 0 2068 226 50 69 chr6 5628453 5629148 -176786094 - L1MC4 LINE L1 -156 7886 7205 2990 79 5 10 chr6 5629165 5629569 -176785673 + MLT2A1 LTR ERVL 3 404 -40 182 56 14 83 chr6 5629570 5629642 -176785600 + (TA)n Simple_repeat Simple_repeat 1 67 0 339 75 75 0 chr6 5629642 5629695 -176785547 + MLT2A1 LTR ERVL 397 453 0 786 178 11 123 chr6 5629696 5629965 -176785277 - L1MC4 LINE L1 -910 7132 6894 453 232 32 8 chr6 5629957 5630082 -176785160 + L1ME2 LINE L1 6023 6150 -14 * 1582 224 124 30 chr6 5630084 5630575 -176784667 + L1MC4 LINE L1 6354 6890 -1152 293 24 49 0 chr6 5630786 5630827 -176784415 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2150 88 0 0 chr6 5630832 5631094 -176784148 - AluY SINE Alu -30 281 20 2432 87 0 0 chr6 5631540 5631851 -176783391 + AluY SINE Alu 1 311 0 705 224 156 29 chr6 5631861 5632066 -176783176 + MIR SINE MIR 11 241 -21 2289 81 0 42 chr6 5632277 5632584 -176782658 - AluSx SINE Alu -16 296 3 258 156 47 16 chr6 5632925 5632989 -176782253 + T-rich Low_complexity Low_complexity 3 68 0 2187 123 0 0 chr6 5633022 5633324 -176781918 + AluSg SINE Alu 1 302 -8 227 100 0 25 chr6 5633326 5633366 -176781876 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 192 61 61 0 chr6 5633588 5633621 -176781621 + MIR SINE MIR 116 150 -112 218 240 0 0 chr6 5634153 5634203 -176781039 - L2 LINE L2 -2 3270 3221 478 307 42 16 chr6 5635378 5635567 -176779675 - MIR SINE MIR 0 262 69 193 143 0 29 chr6 5636402 5636437 -176778805 + MIR SINE MIR 109 142 -120 797 184 126 26 chr6 5636610 5636800 -176778442 - MIR SINE MIR -18 244 36 306 0 0 0 chr6 5637121 5637155 -176778087 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 298 0 18 chr6 5637519 5637576 -176777666 + CT-rich Low_complexity Low_complexity 1 56 0 2608 155 29 31 chr6 5638193 5638710 -176776532 - L1MA9 LINE L1 -22 6290 5775 227 241 48 0 chr6 5638710 5638793 -176776449 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 1142 165 26 35 chr6 5638794 5639024 -176776218 - L1MA9 LINE L1 -524 5788 5561 * 3956 171 58 1 chr6 5639019 5639660 -176775582 - L1MA9 LINE L1 -1777 4369 3675 207 0 0 0 chr6 5639660 5639683 -176775559 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3956 171 58 1 chr6 5639683 5639818 -176775424 - L1MA9 LINE L1 -2471 3675 3549 371 285 7 35 chr6 5640109 5640253 -176774989 + MIR SINE MIR 67 206 -56 362 220 156 0 chr6 5640603 5640712 -176774530 - MER103 DNA DNA -38 128 3 400 247 227 0 chr6 5640769 5640919 -176774323 + MIR SINE MIR 18 201 -61 416 237 209 38 chr6 5642169 5642380 -176772862 + MIR SINE MIR 14 260 -2 501 298 44 24 chr6 5642904 5643152 -176772090 + MIR SINE MIR 5 257 -5 28 0 0 0 chr6 5644842 5644870 -176770372 + AT_rich Low_complexity Low_complexity 1 28 0 2142 137 3 6 chr6 5645115 5645428 -176769814 + AluJb SINE Alu 1 312 0 1471 217 209 14 chr6 5647459 5648119 -176767123 - LTR50 LTR ERVL -1 794 6 273 240 91 25 chr6 5648791 5648912 -176766330 - MIR SINE MIR -74 188 60 249 298 64 0 chr6 5649030 5649124 -176766118 - MIR SINE MIR -46 216 117 1727 169 14 0 chr6 5651121 5651400 -176763842 + AluJo SINE Alu 5 287 -25 231 146 0 0 chr6 5651408 5651449 -176763793 + (TAAG)n Simple_repeat Simple_repeat 1 41 0 631 118 55 31 chr6 5652608 5652735 -176762507 - L1MB8 LINE L1 -19 6159 6030 1341 198 71 39 chr6 5653877 5654215 -176761027 + MLT1A1 LTR MaLR 6 354 -11 2510 77 0 6 chr6 5654252 5654564 -176760678 + AluSp SINE Alu 1 310 -3 587 310 45 4 chr6 5654586 5654828 -176760414 + MIR SINE MIR 8 259 -3 2396 92 3 0 chr6 5655380 5655683 -176759559 + AluSc SINE Alu 1 304 -5 232 234 234 0 chr6 5655937 5656014 -176759228 - MIR SINE MIR -54 208 114 347 147 80 13 chr6 5656029 5656104 -176759138 - REP3 LTR ERV 0 562 483 1201 187 5 5 chr6 5656105 5656324 -176758918 - AluJb SINE Alu -9 303 85 2023 206 71 21 chr6 5656324 5656436 -176758806 - REP3 LTR ERV -70 492 387 2018 202 53 18 chr6 5656436 5656887 -176758355 - MLT1C LTR MaLR 0 467 1 2023 206 71 21 chr6 5656887 5657240 -176758002 - REP3 LTR ERV -175 387 4 617 264 16 21 chr6 5657374 5657567 -176757675 - LTR16A LTR ERVL -1 449 258 521 299 127 22 chr6 5658857 5659502 -176755740 + L1MEd LINE L1 860 1668 -822 922 264 69 27 chr6 5659571 5660019 -176755223 - LTR40a LTR ERVL -6 513 97 22 35 0 0 chr6 5660092 5660121 -176755121 + AT_rich Low_complexity Low_complexity 1 29 0 420 20 0 0 chr6 5660294 5660343 -176754899 + (TG)n Simple_repeat Simple_repeat 2 50 0 257 272 41 54 chr6 5661006 5661153 -176754089 - L1M4 LINE L1 -3276 2870 2726 236 393 0 0 chr6 5662429 5662597 -176752645 + (CCA)n Simple_repeat Simple_repeat 1 168 0 23 33 0 0 chr6 5663319 5663349 -176751893 + AT_rich Low_complexity Low_complexity 1 30 0 1167 180 201 14 chr6 5663376 5663665 -176751577 - MER2 DNA MER2_type 0 344 2 434 349 92 34 chr6 5666694 5666986 -176748256 - L2 LINE L2 -10 3262 2954 238 262 12 48 chr6 5667142 5667226 -176748016 - L2 LINE L2 -531 2783 2703 530 326 80 46 chr6 5667234 5667410 -176747832 - HAL1b LINE L1 -437 911 742 2205 76 40 7 chr6 5667410 5667711 -176747531 - AluY SINE Alu 0 311 1 530 326 80 46 chr6 5667711 5668037 -176747205 - HAL1b LINE L1 -606 742 392 479 259 75 49 chr6 5668043 5668309 -176746933 - HAL1b LINE L1 -987 361 89 255 122 0 0 chr6 5669023 5669072 -176746170 + (A)n Simple_repeat Simple_repeat 1 49 0 256 159 302 0 chr6 5669245 5669308 -176745934 + MLT1J LTR MaLR 353 434 -77 1578 112 29 8 chr6 5669453 5669694 -176745548 - Tigger4(Zombi) DNA MER2_type 0 2731 2486 430 156 0 0 chr6 5669685 5669749 -176745493 - Tigger4(Zombi) DNA MER2_type -2666 65 2 * 23 33 0 0 chr6 5670145 5670175 -176745067 + AT_rich Low_complexity Low_complexity 1 30 0 589 258 165 56 chr6 5670448 5670909 -176744333 + MLT1J LTR MaLR 1 511 0 854 254 26 10 chr6 5671002 5671195 -176744047 - MER58A DNA MER1_type -28 196 1 815 132 101 141 chr6 5673084 5673311 -176741931 - MER20 DNA MER1_type -1 218 1 1421 178 113 14 chr6 5674128 5674403 -176740839 - AluJo SINE Alu -10 302 1 1036 163 15 49 chr6 5675432 5675635 -176739607 + MLT1A1 LTR MaLR 1 196 -169 999 189 25 15 chr6 5675648 5675849 -176739393 + MLT1A1 LTR MaLR 163 365 0 279 314 146 11 chr6 5675999 5676184 -176739058 + MIR SINE MIR 7 216 -46 21 0 0 0 chr6 5676417 5676438 -176738804 + AT_rich Low_complexity Low_complexity 1 21 0 2280 115 0 0 chr6 5676444 5676749 -176738493 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr6 5677828 5677851 -176737391 + GC_rich Low_complexity Low_complexity 1 23 0 1529 122 37 29 chr6 5679782 5680028 -176735214 - Tigger3(Golem) DNA MER2_type -2 3027 2780 1130 207 10 0 chr6 5680025 5680228 -176735014 - Tigger3(Golem) DNA MER2_type -2824 205 1 * 724 181 111 23 chr6 5685407 5685578 -176729664 - L1MB5 LINE L1 0 6174 5989 397 188 10 10 chr6 5685579 5685675 -176729567 + CT-rich Low_complexity Low_complexity 1 96 0 1188 152 24 5 chr6 5685683 5685893 -176729349 - L1MB5 LINE L1 -711 5467 5254 326 185 12 0 chr6 5685946 5686027 -176729215 + CT-rich Low_complexity Low_complexity 3 84 0 745 217 0 0 chr6 5686146 5686275 -176728967 - FLAM_A SINE Alu -4 129 1 2385 89 26 0 chr6 5686276 5686579 -176728663 - AluSx SINE Alu 0 312 2 352 312 89 58 chr6 5686779 5687263 -176727979 - L1M4 LINE L1 -754 5392 4894 1641 146 45 68 chr6 5687314 5687622 -176727620 - AluJo SINE Alu -11 301 1 426 273 73 12 chr6 5687992 5688157 -176727085 + MIR SINE MIR 5 179 -83 202 204 0 45 chr6 5688157 5688201 -176727041 + L2 LINE L2 3221 3262 -10 223 281 34 0 chr6 5690463 5690552 -176724690 - MIR SINE MIR -152 110 19 2191 125 74 11 chr6 5690635 5691002 -176724240 - MLT1B LTR MaLR 0 390 1 2421 91 0 0 chr6 5691295 5691603 -176723639 + AluSx SINE Alu 1 308 -4 197 231 215 0 chr6 5692086 5692151 -176723091 + MIR SINE MIR 42 120 -88 234 0 0 0 chr6 5693152 5693178 -176722064 + (TG)n Simple_repeat Simple_repeat 2 27 0 1586 194 40 65 chr6 5693534 5693982 -176721260 + LTR56 LTR ERV1 9 445 0 2034 137 0 0 chr6 5694296 5694609 -176720633 - AluSx SINE Alu 0 313 1 251 250 232 9 chr6 5694962 5695074 -176720168 + L2 LINE L2 3175 3311 -2 241 268 0 0 chr6 5695108 5695164 -176720078 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 233 250 0 0 chr6 5695165 5695221 -176720021 - L1MD3 LINE L1 -1328 6667 6612 1791 150 33 13 chr6 5697219 5697525 -176717717 - AluJb SINE Alu 0 312 1 323 102 20 0 chr6 5697616 5697665 -176717577 - Alu SINE Alu -244 57 8 276 270 51 29 chr6 5699346 5699483 -176715759 + MIR3 SINE MIR 65 204 -4 2369 123 6 3 chr6 5699587 5699929 -176715313 + MER2 DNA MER2_type 1 343 -1 216 230 122 0 chr6 5700276 5700350 -176714892 + L2 LINE L2 3186 3268 -4 624 276 84 10 chr6 5700872 5701075 -176714167 + MIR SINE MIR 7 224 -38 229 239 28 28 chr6 5701620 5701691 -176713551 + CT-rich Low_complexity Low_complexity 1 71 0 23 54 0 0 chr6 5701769 5701806 -176713436 + AT_rich Low_complexity Low_complexity 1 37 0 523 229 15 8 chr6 5701829 5701960 -176713282 + L2 LINE L2 3182 3313 0 703 288 14 18 chr6 5702585 5702807 -176712435 - MIR SINE MIR -36 226 6 195 42 0 0 chr6 5703268 5703292 -176711950 + (T)n Simple_repeat Simple_repeat 1 24 0 1988 72 12 0 chr6 5703539 5703789 -176711453 - AluY SINE Alu -58 253 1 230 326 8 47 chr6 5703877 5704006 -176711236 + MIR SINE MIR 28 151 -111 1289 257 58 58 chr6 5704006 5704488 -176710754 + HAL1 LINE L1 1 482 -2025 724 268 38 1 chr6 5704691 5704904 -176710338 - MIR SINE MIR -13 249 31 591 275 35 45 chr6 5705123 5705410 -176709832 + HAL1 LINE L1 2224 2507 0 257 372 0 0 chr6 5706427 5706513 -176708729 - L2 LINE L2 -13 3259 3174 230 290 194 0 chr6 5706734 5706827 -176708415 - L2 LINE L2 0 3313 3203 2403 161 37 37 chr6 5707752 5708186 -176707056 + Tigger2a DNA MER2_type 1 434 0 1197 207 27 3 chr6 5708385 5708828 -176706414 - MLT1D LTR MaLR 0 505 1 2286 104 7 0 chr6 5709563 5709861 -176705381 - AluSx SINE Alu -12 300 1 250 218 46 11 chr6 5710054 5710141 -176705101 + (TA)n Simple_repeat Simple_repeat 1 90 0 742 222 81 30 chr6 5710835 5711015 -176704227 + MIR SINE MIR 17 213 -49 1976 109 4 14 chr6 5711015 5711290 -176703952 + AluSp SINE Alu 33 304 -9 742 222 81 30 chr6 5711290 5711343 -176703899 + MIR SINE MIR 213 262 0 296 236 0 28 chr6 5712195 5712267 -176702975 - MIR3 SINE MIR -1 207 138 184 288 25 50 chr6 5712400 5712480 -176702762 - L2 LINE L2 -77 3195 3118 204 222 0 0 chr6 5713143 5713188 -176702054 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1840 169 0 16 chr6 5713374 5713682 -176701560 + AluJb SINE Alu 1 303 -9 884 305 150 27 chr6 5713809 5715026 -176700216 - L2 LINE L2 -420 2894 1528 817 234 53 13 chr6 5715753 5715980 -176699262 + MIR SINE MIR 14 249 -13 270 196 144 21 chr6 5718006 5718103 -176697139 + L3 LINE CR1 1278 1386 -191 4076 111 37 0 chr6 5719639 5720235 -176695007 + L1PA13 LINE L1 5546 6163 0 2197 115 0 0 chr6 5720250 5720546 -176694696 + AluSg SINE Alu 1 296 -14 350 247 22 0 chr6 5720688 5720777 -176694465 - MIR3 SINE MIR -4 204 114 228 316 13 3 chr6 5721592 5721684 -176693558 + MIR SINE MIR 12 106 -102 2346 94 3 10 chr6 5721699 5722008 -176693234 - AluSq SINE Alu -6 307 1 221 242 133 55 chr6 5722009 5722137 -176693105 + MIR SINE MIR 88 225 -37 198 327 158 0 chr6 5723410 5723511 -176691731 + L2 LINE L2 3137 3253 -19 240 111 0 0 chr6 5727206 5727242 -176688000 + (A)n Simple_repeat Simple_repeat 1 36 0 307 354 12 43 chr6 5727848 5728012 -176687230 - MIR3 SINE MIR -27 181 23 181 227 0 0 chr6 5728099 5728143 -176687099 + L2 LINE L2 3261 3304 -9 360 0 0 0 chr6 5728212 5728252 -176686990 + (CA)n Simple_repeat Simple_repeat 2 41 0 191 328 17 0 chr6 5730795 5730853 -176684389 + L2 LINE L2 3128 3186 -86 329 226 0 43 chr6 5733623 5733716 -176681526 - L1ME4a LINE L1 -74 6047 5959 701 288 133 20 chr6 5733822 5734307 -176680935 + L1ME4a LINE L1 5310 5837 -284 299 272 65 0 chr6 5734444 5734536 -176680706 + L1ME4a LINE L1 5997 6094 -27 463 289 187 18 chr6 5735644 5736402 -176678840 - L2 LINE L2 -1 3312 2376 3487 71 2 0 chr6 5736616 5737067 -176678175 - L1PA8 LINE L1 0 6172 5721 293 222 28 42 chr6 5739091 5739163 -176676079 + L2 LINE L2 3193 3263 -9 44715 42 4 0 chr6 5739213 5745349 -176669893 - L1PA4 LINE L1 -1 6154 1 204 340 0 0 chr6 5745482 5745535 -176669707 - L2 LINE L2 -15 3257 3205 1398 253 172 13 chr6 5746579 5747111 -176668131 - MLT1G LTR MaLR -3 587 14 24 0 0 0 chr6 5747539 5747563 -176667679 + AT_rich Low_complexity Low_complexity 1 24 0 1531 176 7 27 chr6 5747734 5748035 -176667207 + AluJo SINE Alu 1 295 -17 662 256 68 11 chr6 5748476 5748667 -176666575 - MIR SINE MIR 0 262 61 590 297 116 19 chr6 5748904 5749189 -176666053 + L1ME4a LINE L1 5315 5625 -599 386 288 72 68 chr6 5749551 5749801 -176665441 + L1ME4a LINE L1 5864 6114 -7 22 0 0 0 chr6 5750897 5750919 -176664323 + AT_rich Low_complexity Low_complexity 1 22 0 2091 141 128 16 chr6 5751136 5751519 -176663723 - MSTA LTR MaLR -2 426 1 378 250 98 8 chr6 5751742 5751874 -176663368 - MLT1I LTR MaLR 0 409 266 483 170 50 0 chr6 5752401 5752501 -176662741 + MER5A DNA MER1_type 9 113 -76 1624 88 0 5 chr6 5752523 5752739 -176662503 - AluSg/x SINE Alu -15 295 81 419 259 196 7 chr6 5752783 5752926 -176662316 - MER5B DNA MER1_type -3 175 6 1970 94 36 0 chr6 5753421 5753696 -176661546 - AluSg SINE Alu -14 296 12 1979 159 47 6 chr6 5757110 5757450 -176657792 - MLT1A1 LTR MaLR -1 364 11 428 193 34 0 chr6 5757887 5757975 -176657267 + MIR SINE MIR 122 212 -50 24 0 0 0 chr6 5758021 5758045 -176657197 + AT_rich Low_complexity Low_complexity 1 24 0 2133 160 0 3 chr6 5759008 5759345 -176655897 - MER1B DNA MER1_type -1 336 1 216 290 110 100 chr6 5760834 5761134 -176654108 - L2 LINE L2 -79 3193 2891 1620 142 0 12 chr6 5761685 5761939 -176653303 - AluJo SINE Alu -24 288 38 336 216 0 0 chr6 5762684 5762781 -176652461 + (TG)n Simple_repeat Simple_repeat 1 97 0 1508 293 75 11 chr6 5763385 5764000 -176651242 + L1MEc LINE L1 31 684 -5712 2831 169 136 120 chr6 5764001 5764300 -176650942 + L1MC3 LINE L1 6757 7049 -736 276 30 0 0 chr6 5764300 5764333 -176650909 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2831 169 136 120 chr6 5764333 5764368 -176650874 + L1MC3 LINE L1 7049 7082 -703 262 234 26 13 chr6 5764368 5764445 -176650797 + MLT1F1 LTR MaLR 33 110 -457 2831 169 136 120 chr6 5764445 5765045 -176650197 + L1MC3 LINE L1 7082 7785 0 24 0 0 0 chr6 5765117 5765141 -176650101 + AT_rich Low_complexity Low_complexity 1 24 0 248 382 71 12 chr6 5765521 5765691 -176649551 - MIR SINE MIR -56 206 27 22 0 0 0 chr6 5766981 5767003 -176648239 + AT_rich Low_complexity Low_complexity 1 22 0 2152 116 0 0 chr6 5767755 5768058 -176647184 + AluSx SINE Alu 1 303 -9 650 301 74 5 chr6 5768070 5768286 -176646956 - MIR SINE MIR -19 243 13 3618 170 29 42 chr6 5768341 5769105 -176646137 - L1MB8 LINE L1 -51 6127 5374 331 252 119 50 chr6 5769114 5769392 -176645850 - L1MC5 LINE L1 -182 7779 7483 3714 169 69 90 chr6 5769449 5770358 -176644884 - MER21A LTR ERV1 -26 905 16 363 44 0 0 chr6 5770358 5770403 -176644839 + (TG)n Simple_repeat Simple_repeat 2 46 0 914 154 37 56 chr6 5770444 5770658 -176644584 - L1MC5 LINE L1 -494 7467 7258 21 0 0 0 chr6 5770714 5770735 -176644507 + AT_rich Low_complexity Low_complexity 1 21 0 257 143 24 0 chr6 5770766 5770808 -176644434 - L1MC5 LINE L1 -737 7224 7182 252 0 0 0 chr6 5770921 5770949 -176644293 + (TA)n Simple_repeat Simple_repeat 1 28 0 2019 108 4 0 chr6 5770949 5771226 -176644016 - AluSx SINE Alu -34 278 1 322 333 63 24 chr6 5771287 5771413 -176643829 + L2 LINE L2 3142 3272 0 1775 164 3 22 chr6 5772113 5772490 -176642752 + AluJb SINE Alu 1 371 0 208 273 73 0 chr6 5773525 5773580 -176641662 - L2 LINE L2 -16 3297 3239 5117 183 86 64 chr6 5773645 5773778 -176641464 - Charlie1a DNA MER1_type -1325 1436 1307 1419 179 13 43 chr6 5773778 5774080 -176641162 + AluJo SINE Alu 3 295 -17 5117 183 86 64 chr6 5774080 5775347 -176639895 - Charlie1a DNA MER1_type -1454 1307 6 275 317 54 32 chr6 5775547 5775768 -176639474 - L2 LINE L2 -361 2953 2728 364 311 92 41 chr6 5776356 5776552 -176638690 + MIR SINE MIR 6 211 -51 385 329 35 21 chr6 5777735 5777878 -176637364 - L3 LINE CR1 -154 1423 1279 265 250 125 39 chr6 5777880 5778008 -176637234 - L2 LINE L2 -16 3297 3159 640 293 139 5 chr6 5778449 5778664 -176636578 + MIR SINE MIR 13 256 -6 2062 106 3 0 chr6 5778666 5778959 -176636283 + AluSx SINE Alu 1 294 -18 294 269 123 58 chr6 5780010 5780181 -176635061 + MIR SINE MIR 67 248 -14 1029 212 5 5 chr6 5782869 5783067 -176632175 - MER20 DNA MER1_type -21 198 1 800 217 128 10 chr6 5783801 5784004 -176631238 - MIR SINE MIR 0 262 36 249 313 21 10 chr6 5784267 5784363 -176630879 + CT-rich Low_complexity Low_complexity 1 97 0 391 200 27 0 chr6 5785141 5785216 -176630026 - L2 LINE L2 -11 3261 3185 253 312 11 11 chr6 5785353 5785446 -176629796 + MIR SINE MIR 162 254 -8 198 329 89 0 chr6 5785897 5785976 -176629266 - L2 LINE L2 -17 3255 3170 487 299 77 11 chr6 5786783 5787013 -176628229 + MIR SINE MIR 13 261 -1 367 357 14 0 chr6 5787602 5787745 -176627497 - MIR SINE MIR -10 252 108 318 67 0 0 chr6 5787815 5787860 -176627382 + (CATA)n Simple_repeat Simple_repeat 2 46 0 424 272 32 10 chr6 5788232 5788343 -176626899 - MIR SINE MIR -88 120 6 1579 203 73 35 chr6 5789019 5789443 -176625799 - MLT1F LTR MaLR -102 440 1 2192 127 0 0 chr6 5790263 5790555 -176624687 + AluSg SINE Alu 1 292 -18 306 247 68 66 chr6 5790653 5790902 -176624340 + MLT1J LTR MaLR 126 364 -147 195 100 0 0 chr6 5790949 5790979 -176624263 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1799 164 11 7 chr6 5790981 5791262 -176623980 - AluJo SINE Alu -30 282 1 1071 176 53 13 chr6 5791984 5792211 -176623031 - L1MD2 LINE L1 -294 6065 5830 950 129 0 8 chr6 5792226 5792358 -176622884 + FLAM_C SINE Alu 1 131 -2 585 297 91 18 chr6 5792869 5793088 -176622154 - MIR SINE MIR -15 247 13 2387 99 0 3 chr6 5794651 5794964 -176620278 - AluSx SINE Alu 0 312 1 540 290 43 6 chr6 5797422 5797584 -176617658 - MIR SINE MIR -75 187 20 23 68 0 0 chr6 5797862 5797906 -176617336 + AT_rich Low_complexity Low_complexity 1 44 0 1909 159 0 3 chr6 5798558 5798848 -176616394 - AluJb SINE Alu -19 293 5 188 282 68 68 chr6 5799685 5799788 -176615454 + L2 LINE L2 3158 3260 -12 1392 237 90 62 chr6 5799938 5800518 -176614724 - L2 LINE L2 -221 3092 2482 462 283 7 7 chr6 5800521 5800659 -176614583 - MLT1F LTR MaLR -404 138 1 321 236 0 2 chr6 5801641 5801715 -176613527 - MIR SINE MIR -84 124 52 301 223 204 51 chr6 5802317 5802474 -176612768 - L2 LINE L2 -571 2743 2563 525 309 84 50 chr6 5802998 5803318 -176611924 - L2 LINE L2 -1 3271 2941 311 307 111 33 chr6 5805730 5805883 -176609359 - MIR3 SINE MIR -24 184 20 223 317 120 7 chr6 5805955 5806097 -176609145 + MIR SINE MIR 61 218 -44 282 292 62 23 chr6 5807094 5807300 -176607942 - MIR SINE MIR -1 261 2 649 312 113 34 chr6 5807545 5807895 -176607347 - L1MEc LINE L1 -753 1737 1303 1541 295 108 37 chr6 5807913 5808216 -176607026 - L1MEc LINE L1 -4873 1246 966 2337 66 33 0 chr6 5808216 5808518 -176606724 - L1PA7 LINE L1 -4 6150 5839 1541 295 108 37 chr6 5808518 5809012 -176606230 - L1MEc LINE L1 -5153 966 352 189 0 0 0 chr6 5809012 5809033 -176606209 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1541 295 108 37 chr6 5809033 5809296 -176605946 - L1MEc LINE L1 -5767 352 109 1860 133 154 16 chr6 5809330 5809699 -176605543 - MSTA LTR MaLR 0 428 9 279 257 14 40 chr6 5810658 5810732 -176604510 + MIR SINE MIR 16 87 -175 264 315 41 20 chr6 5811246 5811392 -176603850 + MARNA DNA Mariner 196 344 -242 318 356 19 0 chr6 5812065 5812169 -176603073 - MIR SINE MIR -109 153 48 517 307 21 107 chr6 5812175 5812550 -176602692 + L2 LINE L2 2930 3272 0 248 285 220 32 chr6 5812698 5812884 -176602358 + L3 LINE CR1 1259 1479 -98 180 235 78 0 chr6 5812867 5812918 -176602324 + MIR3 SINE MIR 151 205 -3 * 180 0 0 0 chr6 5814821 5814841 -176600401 + (A)n Simple_repeat Simple_repeat 1 20 0 316 122 0 0 chr6 5815039 5815088 -176600154 - L1MB4 LINE L1 -302 5878 5830 243 182 164 18 chr6 5815098 5815153 -176600089 - MIR SINE MIR -119 143 81 274 268 141 64 chr6 5815201 5815421 -176599821 - MIR SINE MIR 0 262 26 1602 159 0 23 chr6 5816233 5816490 -176598752 + AluJo SINE Alu 52 302 -10 538 292 58 6 chr6 5816513 5816684 -176598558 - MIR3 SINE MIR -8 200 21 715 276 43 17 chr6 5817088 5817320 -176597922 - MIR SINE MIR -16 246 9 190 253 242 10 chr6 5818800 5818899 -176596343 + L2 LINE L2 3150 3271 -1 2799 161 61 37 chr6 5819671 5820077 -176595165 - L1MB5 LINE L1 -1 6173 5745 2341 89 0 0 chr6 5820077 5820368 -176594874 - AluSx SINE Alu -21 291 1 2799 161 61 37 chr6 5820368 5820582 -176594660 - L1MB5 LINE L1 -429 5745 5538 718 255 34 24 chr6 5820582 5820790 -176594452 + MIR SINE MIR 43 252 -10 2180 193 22 12 chr6 5821619 5822301 -176592941 - L1MB5 LINE L1 -658 5526 4839 288 77 0 0 chr6 5823404 5823443 -176591799 + (CTG)n Simple_repeat Simple_repeat 1 39 0 234 361 36 36 chr6 5823444 5823610 -176591632 - MIR3 SINE MIR -24 184 19 274 327 30 42 chr6 5823931 5824096 -176591146 + MER5B DNA MER1_type 13 175 -3 1385 161 94 58 chr6 5825760 5825948 -176589294 - MER7A DNA MER2_type -2692 346 141 2476 159 31 2 chr6 5825948 5826364 -176588878 + MSTA LTR MaLR 1 428 0 1385 161 94 58 chr6 5826364 5826504 -176588738 - MER7A DNA MER2_type -2897 141 8 207 330 33 22 chr6 5826585 5826676 -176588566 - MIR SINE MIR -79 183 92 1432 139 28 5 chr6 5826796 5827012 -176588230 + AluJo SINE Alu 86 306 -6 360 269 40 74 chr6 5827357 5827506 -176587736 + MIR SINE MIR 119 262 0 373 335 30 30 chr6 5827519 5827683 -176587559 - MIR3 SINE MIR -5 203 40 218 303 15 0 chr6 5828632 5828698 -176586544 - L2 LINE L2 -49 3223 3157 208 147 0 0 chr6 5829373 5829407 -176585835 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 230 190 172 78 chr6 5829547 5829663 -176585579 + MIR SINE MIR 27 153 -109 1517 203 80 45 chr6 5830402 5830951 -176584291 + L1ME LINE L1 4860 5423 -741 481 183 44 36 chr6 5830949 5831086 -176584156 + L1ME2 LINE L1 5918 6055 -109 * 225 0 0 0 chr6 5831086 5831111 -176584131 + (T)n Simple_repeat Simple_repeat 1 25 0 426 20 0 0 chr6 5831142 5831193 -176584049 + (TC)n Simple_repeat Simple_repeat 2 52 0 807 157 22 30 chr6 5831193 5831327 -176583915 - FLAM_C SINE Alu 0 133 1 564 179 8 8 chr6 5831328 5831445 -176583797 + L1ME2 LINE L1 6039 6155 -9 540 246 63 0 chr6 5832256 5832398 -176582844 + MIR SINE MIR 56 206 -56 7355 51 0 0 chr6 5832475 5833638 -176581604 - L1PA6 LINE L1 0 6154 4995 707 148 15 15 chr6 5833638 5833773 -176581469 + L1MB7 LINE L1 6050 6184 0 341 154 14 42 chr6 5833773 5833855 -176581387 + L1ME LINE L1 5595 5665 -501 189 279 180 8 chr6 5834181 5834303 -176580939 - MER5A DNA MER1_type -3 186 44 2227 201 19 11 chr6 5834440 5834902 -176580340 + MLT1C LTR MaLR 2 467 0 245 211 28 0 chr6 5835655 5835726 -176579516 + CT-rich Low_complexity Low_complexity 1 73 0 244 291 0 0 chr6 5836340 5836395 -176578847 + MIR SINE MIR 7 61 -201 3110 179 91 24 chr6 5836562 5837284 -176577958 + MER21A LTR ERV1 1 771 -160 196 293 83 53 chr6 5837484 5837617 -176577625 - MIR SINE MIR -45 217 81 211 303 40 0 chr6 5838350 5838426 -176576816 - MIR3 SINE MIR -6 202 124 275 258 0 16 chr6 5839016 5839078 -176576164 + MIR SINE MIR 89 149 -113 391 118 24 24 chr6 5839080 5839165 -176576077 - LTR67 LTR ERVL -2 555 471 2668 174 41 6 chr6 5839166 5839700 -176575542 + L1MB5 LINE L1 5572 6124 -50 985 233 41 23 chr6 5840717 5841060 -176574182 - L1MC4 LINE L1 -5 8037 7689 436 205 103 0 chr6 5841060 5841168 -176574074 - L1 LINE L1 -3294 2852 2736 256 326 31 0 chr6 5841217 5841315 -176573927 - L1ME LINE L1 -5625 445 345 345 82 0 0 chr6 5842112 5842161 -176573081 + (CA)n Simple_repeat Simple_repeat 2 50 0 634 197 61 3 chr6 5842578 5842763 -176572479 - MLT1B LTR MaLR 0 390 217 3542 86 2 4 chr6 5842763 5843240 -176572002 - L1PA13 LINE L1 -2 6161 5686 634 197 61 3 chr6 5843240 5843364 -176571878 - MLT1B LTR MaLR -173 217 1 1458 144 164 12 chr6 5843685 5843941 -176571301 + AluY SINE Alu 1 295 -16 5315 146 37 39 chr6 5844072 5844256 -176570986 - L1MA9 LINE L1 0 6312 6129 2512 85 0 0 chr6 5844256 5844562 -176570680 - AluY SINE Alu -5 306 1 5315 146 37 39 chr6 5844562 5845647 -176569595 - L1MA9 LINE L1 -183 6129 5043 251 146 21 0 chr6 5845645 5845693 -176569549 + L1MA9 LINE L1 4989 5037 -1109 * 826 305 71 24 chr6 5845696 5846116 -176569126 + L2 LINE L2 1033 1472 -1842 1986 122 4 4 chr6 5846675 5846953 -176568289 + AluY SINE Alu 1 278 -33 200 35 35 0 chr6 5846953 5846982 -176568260 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 694 272 111 48 chr6 5847195 5847910 -176567332 - L2 LINE L2 -6 3307 2544 558 230 115 48 chr6 5848029 5848238 -176567004 - MER31B LTR ERV1 0 466 244 249 268 28 0 chr6 5848247 5848318 -176566924 - MER31B LTR ERV1 -382 84 12 2843 65 3 3 chr6 5848319 5848673 -176566569 - THE1A LTR MaLR -1 354 1 12311 82 4 1 chr6 5848673 5850248 -176564994 - THE1A-int LTR MaLR 0 1580 1 2789 80 11 0 chr6 5850248 5850599 -176564643 - THE1A LTR MaLR 0 355 1 403 247 123 31 chr6 5850620 5850782 -176564460 - L2 LINE L2 -940 2374 2198 2346 159 7 27 chr6 5850874 5851277 -176563965 + MSTD LTR MaLR 2 396 0 747 219 47 47 chr6 5851504 5851736 -176563506 - MLT1A2 LTR MaLR 0 365 134 283 95 24 0 chr6 5851736 5851778 -176563464 - MLT1A1 LTR MaLR 0 457 415 1333 99 0 0 chr6 5851779 5851971 -176563271 + L1MA2 LINE L1 6113 6304 0 1038 183 46 118 chr6 5851992 5852358 -176562884 - MLT1A1 LTR MaLR -25 340 1 2587 209 32 9 chr6 5852367 5852894 -176562348 - MLT1A1-int LTR MaLR -1 1734 1196 1181 197 13 26 chr6 5852896 5853130 -176562112 - MLT2B3 LTR ERVL -237 317 87 387 188 0 0 chr6 5853207 5853276 -176561966 - MLT2B3 LTR ERVL -484 70 2 765 128 78 35 chr6 5853279 5853420 -176561822 - MLT1A2 LTR MaLR -227 147 1 2237 122 0 0 chr6 5853565 5853869 -176561373 - AluSx SINE Alu -8 304 1 978 185 0 0 chr6 5853929 5854091 -176561151 - FAM SINE Alu -13 162 1 420 71 0 0 chr6 5854566 5854622 -176560620 + (TG)n Simple_repeat Simple_repeat 1 56 0 1886 77 0 0 chr6 5854622 5854844 -176560398 - AluSq SINE Alu -91 222 1 466 277 69 23 chr6 5854900 5855151 -176560091 - L1ME LINE L1 -317 5804 5584 234 0 0 0 chr6 5856746 5856772 -176558470 + (TC)n Simple_repeat Simple_repeat 1 26 0 366 340 39 0 chr6 5857946 5858149 -176557093 + L1ME3A LINE L1 5727 5937 -233 1552 194 154 19 chr6 5858168 5858215 -176557027 + MSTA LTR MaLR 1 40 -388 2301 130 13 24 chr6 5858215 5858593 -176556649 + THE1C LTR MaLR 1 374 -1 1552 194 154 19 chr6 5858593 5858922 -176556320 + MSTA LTR MaLR 40 428 0 9868 160 25 2 chr6 5858922 5860535 -176554707 + THE1C-int LTR MaLR 1 1650 -1 1913 170 154 0 chr6 5860542 5860913 -176554329 + MSTA LTR MaLR 1 428 0 315 263 0 40 chr6 5861085 5861184 -176554058 + L1MC5 LINE L1 7847 7941 -20 266 232 21 0 chr6 5862035 5862130 -176553112 + CT-rich Low_complexity Low_complexity 1 97 0 786 75 0 0 chr6 5862330 5862436 -176552806 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 1044 216 73 85 chr6 5863320 5863699 -176551543 + MLT2D LTR ERVL 1 376 -38 225 0 0 0 chr6 5863699 5863724 -176551518 + (CA)n Simple_repeat Simple_repeat 2 26 0 1044 216 73 85 chr6 5863724 5863755 -176551487 + MLT2D LTR ERVL 376 406 -8 314 232 77 97 chr6 5863922 5864129 -176551113 - L2 LINE L2 -217 3055 2853 1914 201 40 25 chr6 5864376 5864902 -176550340 + MER74A LTR ERVL 1 534 -24 13421 115 37 16 chr6 5865248 5867403 -176547839 - Tigger1 DNA MER2_type -219 2199 1 4194 145 26 0 chr6 5871468 5872157 -176543085 - L1MC1 LINE L1 -5 6328 5622 522 266 40 40 chr6 5872184 5872357 -176542885 + MER5B DNA MER1_type 4 176 -2 326 222 16 0 chr6 5872506 5872569 -176542673 + L1MCa LINE L1 2005 2068 -4358 366 23 0 0 chr6 5872586 5872629 -176542613 + (GA)n Simple_repeat Simple_repeat 2 44 0 1743 133 0 72 chr6 5872629 5872776 -176542466 - AluJo SINE Alu -40 272 155 2055 107 0 38 chr6 5872776 5873066 -176542176 - AluSg SINE Alu -12 298 20 1743 133 0 72 chr6 5873066 5873211 -176542031 - AluJo SINE Alu -157 155 1 2223 89 0 3 chr6 5873636 5873918 -176541324 - AluSg SINE Alu -16 294 14 273 311 10 10 chr6 5874242 5874345 -176540897 + C-rich Low_complexity Low_complexity 1 103 0 4641 177 17 6 chr6 5875384 5876270 -176538972 + L1MB3 LINE L1 5273 6168 -15 2257 99 3 0 chr6 5877884 5878177 -176537065 - AluSq SINE Alu -19 294 1 257 0 30 0 chr6 5878346 5878379 -176536863 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4749 138 87 11 chr6 5878393 5878425 -176536817 + L1MA7 LINE L1 5282 5310 -981 2285 137 8 27 chr6 5878425 5878714 -176536528 + MER47A DNA MER2_type 1 283 -2040 2104 149 0 0 chr6 5878714 5879023 -176536219 - AluJb SINE Alu -3 309 1 2285 137 8 27 chr6 5879023 5879106 -176536136 + MER47A DNA MER2_type 283 366 0 4749 138 87 11 chr6 5879106 5880007 -176535235 + L1MA7 LINE L1 5310 6286 -5 411 260 31 8 chr6 5882166 5882293 -176532949 - MIR SINE MIR -109 153 24 293 238 60 46 chr6 5882469 5882620 -176532622 + Charlie7 DNA MER1_type 2444 2596 -16 318 239 12 153 chr6 5883233 5883396 -176531846 + MIR SINE MIR 117 256 -6 255 200 212 12 chr6 5883405 5883490 -176531752 + MIR SINE MIR 65 166 -96 317 95 0 0 chr6 5883493 5883535 -176531707 - 5S rRNA rRNA -79 42 1 564 332 45 7 chr6 5883607 5883842 -176531400 + MIR SINE MIR 17 259 -3 558 282 37 31 chr6 5883867 5884007 -176531235 - MIR SINE MIR -39 223 80 2034 133 41 0 chr6 5884007 5884301 -176530941 + AluSx SINE Alu 1 306 -6 558 282 37 31 chr6 5884301 5884323 -176530919 - MIR SINE MIR -182 80 60 1794 175 3 19 chr6 5885149 5885457 -176529785 + AluJb SINE Alu 2 304 -8 788 144 6 18 chr6 5885457 5885624 -176529618 + GA-rich Low_complexity Low_complexity 1 165 0 228 306 113 16 chr6 5885706 5885830 -176529412 + MIR SINE MIR 73 208 -54 269 189 11 111 chr6 5886107 5886197 -176529045 + MIR SINE MIR 82 162 -100 258 188 34 26 chr6 5886285 5886402 -176528840 + (TAA)n Simple_repeat Simple_repeat 1 118 0 6992 61 12 45 chr6 5887899 5888880 -176526362 - SVA Other Other -5 1381 433 5885 67 27 12 chr6 5888893 5889712 -176525530 - SVA Other Other -555 831 1 403 268 36 7 chr6 5889719 5889857 -176525385 - L1ME LINE L1 -538 5583 5442 2139 88 4 0 chr6 5889982 5890244 -176524998 + AluSq SINE Alu 1 263 -50 191 59 0 29 chr6 5890264 5890298 -176524944 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 360 185 15 0 chr6 5891081 5891146 -176524096 + MIR SINE MIR 82 147 -61 235 299 21 10 chr6 5891486 5891583 -176523659 - MIR SINE MIR -54 208 111 233 229 9 0 chr6 5892079 5892184 -176523058 + (AGGTG)n Simple_repeat Simple_repeat 5 110 0 211 240 16 0 chr6 5892198 5892323 -176522919 + (AGGTG)n Simple_repeat Simple_repeat 3 129 0 213 243 43 0 chr6 5892345 5892415 -176522827 + (AGGTG)n Simple_repeat Simple_repeat 3 75 0 438 289 64 6 chr6 5893370 5893526 -176521716 + MIR3 SINE MIR 37 201 -7 2824 236 43 24 chr6 5895071 5895876 -176519366 - L1ME3A LINE L1 -76 6094 5274 342 257 184 0 chr6 5896762 5896871 -176518371 - L2 LINE L2 -1 3271 3143 1417 266 51 58 chr6 5897646 5898252 -176516990 - MLT1L LTR MaLR 0 615 14 259 232 253 0 chr6 5898673 5898772 -176516470 + MIR SINE MIR 53 176 -86 257 137 196 0 chr6 5899081 5899132 -176516110 - MLT1J1 LTR MaLR -385 61 1 427 228 117 0 chr6 5899687 5899832 -176515410 + LTR16C LTR ERVL 330 491 0 561 286 30 0 chr6 5900562 5900730 -176514512 + LTR16A LTR ERVL 97 269 -181 349 273 111 0 chr6 5900778 5900877 -176514365 + LTR16A LTR ERVL 341 450 0 391 269 0 0 chr6 5901249 5901357 -176513885 + L2 LINE L2 2503 2610 -704 300 325 63 16 chr6 5901983 5902174 -176513068 + L2 LINE L2 3106 3305 -8 193 312 192 16 chr6 5902753 5902878 -176512364 - MIR3 SINE MIR -29 179 33 204 242 15 15 chr6 5902902 5902968 -176512274 + CT-rich Low_complexity Low_complexity 2 67 0 21 36 0 0 chr6 5904330 5904358 -176510884 + AT_rich Low_complexity Low_complexity 1 28 0 1067 261 92 11 chr6 5904860 5905205 -176510037 + MLT1J LTR MaLR 1 373 -138 2024 144 89 53 chr6 5905205 5905291 -176509951 - MLT2D LTR ERVL -2 518 437 243 0 0 0 chr6 5905291 5905318 -176509924 + (CA)n Simple_repeat Simple_repeat 2 28 0 2024 144 89 53 chr6 5905318 5905623 -176509619 - MLT2D LTR ERVL -83 437 38 1930 163 12 65 chr6 5905623 5905733 -176509509 + MLT1B LTR MaLR 1 115 -275 1897 90 12 102 chr6 5905733 5906065 -176509177 + AluSx SINE Alu 1 302 -10 1930 163 12 65 chr6 5906065 5906366 -176508876 + MLT1B LTR MaLR 115 390 0 2024 144 89 53 chr6 5906366 5906406 -176508836 - MLT2D LTR ERVL -482 38 1 245 326 28 14 chr6 5907602 5907746 -176507496 + MIR SINE MIR 109 254 -8 446 297 50 41 chr6 5908648 5908867 -176506375 - MIR SINE MIR -26 236 16 5046 134 7 67 chr6 5909843 5910790 -176504452 - L1MB3 LINE L1 -9 6174 5284 198 277 62 0 chr6 5910836 5910901 -176504341 - MIR SINE MIR -117 145 77 7664 37 0 0 chr6 5910932 5912188 -176503054 - L1PA5 LINE L1 0 6154 4900 6987 167 36 10 chr6 5912435 5913055 -176502187 + L1MA9 LINE L1 4022 4624 -1688 2149 140 0 0 chr6 5913055 5913355 -176501887 + AluSx SINE Alu 1 300 -12 6987 167 36 10 chr6 5913355 5914898 -176500344 + L1MA9 LINE L1 4624 6312 0 1016 223 55 106 chr6 5914928 5915586 -176499656 + MLT1D LTR MaLR 17 505 0 490 198 9 0 chr6 5915758 5915864 -176499378 - MIR SINE MIR -85 177 71 424 185 12 12 chr6 5916408 5916489 -176498753 + L1MB1 LINE L1 5685 5765 -401 712 148 58 26 chr6 5916489 5916637 -176498605 + L1MB8 LINE L1 6018 6177 -1 1507 182 28 18 chr6 5917397 5917601 -176497641 + MER33 DNA MER1_type 1 201 -2384 2044 119 69 28 chr6 5917601 5917961 -176497281 + THE1C LTR MaLR 1 375 0 1507 182 28 18 chr6 5917961 5918087 -176497155 + MER33 DNA MER1_type 201 324 0 190 339 35 9 chr6 5918470 5918585 -176496657 - L2 LINE L2 -971 2343 2226 618 256 111 14 chr6 5918760 5918967 -176496275 + MLT1G LTR MaLR 61 287 -303 629 262 6 17 chr6 5919001 5919173 -176496069 + MLT1G LTR MaLR 421 590 0 619 319 58 25 chr6 5919660 5919936 -176495306 - L3 LINE CR1 -824 753 469 324 157 0 0 chr6 5920199 5920250 -176494992 + L1MB1 LINE L1 5817 5867 -301 4119 166 43 15 chr6 5920551 5921365 -176493877 + L1MA10 LINE L1 5487 6323 -11 1999 130 0 11 chr6 5921380 5921665 -176493577 - AluSx SINE Alu -22 290 9 213 156 0 22 chr6 5921851 5921896 -176493346 + T-rich Low_complexity Low_complexity 6 49 0 388 276 184 6 chr6 5921970 5922144 -176493098 + MIR SINE MIR 29 233 -29 317 253 0 0 chr6 5923186 5923261 -176491981 - L1ME3A LINE L1 -311 5859 5785 451 239 26 9 chr6 5923275 5923388 -176491854 - L1MA10 LINE L1 -2 6332 6218 639 252 47 51 chr6 5923451 5923705 -176491537 - L1ME3A LINE L1 -393 5777 5525 772 286 118 18 chr6 5923718 5924176 -176491066 - L1ME3A LINE L1 -1692 4454 3951 720 304 101 7 chr6 5924642 5925080 -176490162 - L3 LINE CR1 -2 1575 1097 1855 168 61 82 chr6 5927012 5927306 -176487936 - MLT1C LTR MaLR 0 467 183 2077 120 0 49 chr6 5927306 5927632 -176487610 - AluSg SINE Alu 0 310 1 1855 168 61 82 chr6 5927632 5927778 -176487464 - MLT1C LTR MaLR -284 183 36 224 279 58 0 chr6 5927951 5928037 -176487205 + L3b LINE CR1 1239 1329 -254 279 0 0 0 chr6 5928556 5928587 -176486655 + (CA)n Simple_repeat Simple_repeat 2 32 0 565 329 48 17 chr6 5928883 5929236 -176486006 - LTR16C LTR ERVL 0 491 128 675 100 0 0 chr6 5929489 5929579 -176485663 + FLAM_A SINE Alu 10 99 -43 1025 347 62 24 chr6 5929870 5930545 -176484697 - ERVL LTR ERVL -719 5045 4345 26 0 0 0 chr6 5930561 5930587 -176484655 + AT_rich Low_complexity Low_complexity 1 26 0 2245 303 66 40 chr6 5930593 5932790 -176482452 - ERVL LTR ERVL -1536 4228 1902 684 354 97 8 chr6 5933082 5933455 -176481787 - ERVL LTR ERVL -3531 1465 1060 2413 94 0 0 chr6 5934189 5934496 -176480746 + AluY SINE Alu 1 307 -4 248 234 73 40 chr6 5934755 5934879 -176480363 + L1ME LINE L1 40 167 -5903 322 234 0 13 chr6 5935117 5935194 -176480048 + L2 LINE L2 3229 3304 -9 370 227 62 31 chr6 5935448 5935576 -176479666 + MIR SINE MIR 65 196 -66 227 242 65 0 chr6 5935578 5935640 -176479602 - L2 LINE L2 -1 3312 3247 265 195 230 44 chr6 5935644 5935757 -176479485 - L2 LINE L2 0 3313 3180 1361 171 23 5 chr6 5935807 5936220 -176479022 + MLT2B2 LTR ERVL 1 515 0 570 292 50 7 chr6 5937861 5938138 -176477104 - L1ME4a LINE L1 -1 6120 5832 969 287 96 39 chr6 5938166 5938973 -176476269 + L2 LINE L2 2461 3313 0 375 244 131 40 chr6 5938988 5939164 -176476078 - L1ME4a LINE L1 -334 5787 5596 34041 31 18 10 chr6 5939172 5944939 -176470303 - L1PA2 LINE L1 -2 6153 322 1476 18 0 0 chr6 5944939 5945104 -176470138 - AluYb8 SINE Alu 0 318 154 34041 31 18 10 chr6 5945104 5945426 -176469816 - L1PA2 LINE L1 -5833 322 4 607 284 89 4 chr6 5946039 5946275 -176468967 - MIR SINE MIR -3 259 4 1915 212 129 39 chr6 5946289 5946808 -176468434 - MLT1G LTR MaLR -6 584 19 502 131 0 24 chr6 5946809 5946893 -176468349 - L1MC1 LINE L1 0 6333 6252 2260 94 17 7 chr6 5946921 5947220 -176468022 - AluSc SINE Alu 0 309 8 547 318 31 41 chr6 5948407 5948725 -176466517 + MLT1I LTR MaLR 82 396 -13 1055 261 5 0 chr6 5948725 5948943 -176466299 + MER58A DNA MER1_type 4 222 -2 189 0 0 0 chr6 5949761 5949782 -176465460 + (T)n Simple_repeat Simple_repeat 1 21 0 528 16 0 0 chr6 5950415 5950476 -176464766 + (CA)n Simple_repeat Simple_repeat 2 62 0 216 0 0 0 chr6 5950475 5950499 -176464743 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 429 191 57 77 chr6 5950772 5950955 -176464287 + MER58 DNA MER1_type 43 2419 -1 2058 269 77 70 chr6 5950977 5953131 -176462111 - HERV16 LTR ERVL -2762 2234 1 1336 253 93 23 chr6 5953138 5953534 -176461708 - LTR16A LTR ERVL -10 440 17 253 236 112 22 chr6 5953644 5953733 -176461509 - L1ME4a LINE L1 -17 6104 6008 289 131 51 35 chr6 5954127 5954206 -176461036 + L1PB4 LINE L1 5684 5758 -396 205 228 25 0 chr6 5954216 5954295 -176460947 + (CA)n Simple_repeat Simple_repeat 1 81 0 2154 128 56 11 chr6 5954295 5954653 -176460589 + L1PB4 LINE L1 5783 6156 0 741 251 25 5 chr6 5954740 5954939 -176460303 - L1ME4a LINE L1 -393 5728 5526 2153 118 0 10 chr6 5956155 5956452 -176458790 - AluSq SINE Alu -19 294 1 180 77 0 0 chr6 5956543 5956569 -176458673 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 279 122 0 0 chr6 5956665 5956714 -176458528 + (GA)n Simple_repeat Simple_repeat 2 50 0 589 298 164 3 chr6 5957021 5957350 -176457892 - Tigger8 DNA MER2_type -174 492 111 189 0 0 0 chr6 5957397 5957418 -176457824 + (TG)n Simple_repeat Simple_repeat 2 22 0 1230 202 68 46 chr6 5958726 5959214 -176456028 - MLT1F LTR MaLR 0 567 20 282 184 79 26 chr6 5959424 5959500 -176455742 + LTR50 LTR ERVL 716 795 0 301 298 0 11 chr6 5959576 5959670 -176455572 - MIR SINE MIR -121 141 49 2762 155 33 26 chr6 5960123 5960614 -176454628 + L1PA15 LINE L1 5670 6163 -2 303 348 123 40 chr6 5961050 5961277 -176453965 - MIR SINE MIR -1 261 16 362 300 0 0 chr6 5961728 5961828 -176453414 + MER5A DNA MER1_type 67 166 -23 499 266 65 18 chr6 5961904 5962073 -176453169 + MIR SINE MIR 47 223 -39 21 36 0 0 chr6 5962453 5962481 -176452761 + AT_rich Low_complexity Low_complexity 1 28 0 1049 288 50 52 chr6 5962977 5963394 -176451848 - L2 LINE L2 -66 3247 2832 2284 185 17 77 chr6 5963394 5963928 -176451314 - MLT1D LTR MaLR -1 504 3 1049 288 50 52 chr6 5963928 5964307 -176450935 - L2 LINE L2 -481 2832 2454 245 214 54 0 chr6 5964524 5964580 -176450662 - LTR50 LTR ERVL 0 795 737 319 231 100 23 chr6 5964580 5964710 -176450532 - L1MEc LINE L1 -4544 1852 1713 843 49 0 0 chr6 5964734 5964836 -176450406 - L1PA7 LINE L1 -3 6151 6050 340 261 22 0 chr6 5964838 5964930 -176450312 - L2 LINE L2 -644 2670 2577 33001 108 8 58 chr6 5964962 5971324 -176443918 - L1PA7 LINE L1 -108 6046 12 1041 255 50 61 chr6 5971335 5971557 -176443685 - L1MEc LINE L1 -4678 1718 1495 1639 174 44 7 chr6 5971557 5971855 -176443387 - 7SLRNA srpRNA srpRNA -9 311 3 1041 255 50 61 chr6 5971855 5972174 -176443068 - L1MEc LINE L1 -4901 1495 1183 351 220 28 37 chr6 5972189 5972298 -176442944 + LTR16B LTR ERVL 355 462 -2 1124 304 27 38 chr6 5972332 5972888 -176442354 - L1MEc LINE L1 -5637 759 210 1015 175 0 16 chr6 5973037 5973231 -176442011 + L1MB7 LINE L1 4976 5166 -980 2117 173 41 12 chr6 5973231 5973647 -176441595 + L1MB3 LINE L1 5749 6176 -7 4077 202 45 12 chr6 5973668 5974664 -176440578 + L1MB7 LINE L1 5149 6173 -11 256 222 127 16 chr6 5974703 5974766 -176440476 + L2 LINE L2 3204 3273 -40 21 0 0 0 chr6 5974856 5974877 -176440365 + AT_rich Low_complexity Low_complexity 1 21 0 514 285 80 10 chr6 5975052 5975252 -176439990 + MIR SINE MIR 48 261 -1 320 26 0 0 chr6 5975914 5975953 -176439289 + U5 snRNA snRNA 6 44 -72 184 298 0 0 chr6 5976626 5976673 -176438569 + MIR SINE MIR 215 261 -1 423 202 0 0 chr6 5976677 5976771 -176438471 + (CCA)n Simple_repeat Simple_repeat 1 94 0 381 340 29 40 chr6 5977014 5977377 -176437865 + L3 LINE CR1 430 866 -711 2469 167 55 4 chr6 5977460 5977916 -176437326 + L1MD1 LINE L1 5565 6043 -199 1512 213 66 26 chr6 5977916 5978263 -176436979 - MSTD LTR MaLR 0 396 36 1030 163 41 5 chr6 5978270 5978461 -176436781 + L1MD1 LINE L1 6039 6237 -1 198 0 0 0 chr6 5978461 5978483 -176436759 + (CA)n Simple_repeat Simple_repeat 1 22 0 760 339 42 0 chr6 5978505 5978791 -176436451 + L3 LINE CR1 976 1273 -304 2042 162 34 3 chr6 5979265 5979617 -176435625 - MLT1A1 LTR MaLR 0 365 3 1758 189 0 3 chr6 5980452 5980944 -176434298 - AluJo SINE Alu 0 312 1 502 289 0 7 chr6 5981241 5981376 -176433866 - MER94 DNA DNA 0 134 1 198 231 70 124 chr6 5981864 5982050 -176433192 + L2 LINE L2 3015 3190 -82 184 274 20 0 chr6 5982599 5982650 -176432592 - L2 LINE L2 -5 3267 3216 1323 234 80 27 chr6 5982787 5983291 -176431951 + MLT1E LTR MaLR 102 593 0 703 257 50 94 chr6 5983339 5983701 -176431541 + LTR16A LTR ERVL 105 450 0 201 310 0 14 chr6 5983901 5983972 -176431270 - MIR3 SINE MIR -27 181 112 288 299 0 0 chr6 5984419 5984506 -176430736 - MIR SINE MIR -26 236 150 1903 188 39 39 chr6 5985378 5985793 -176429449 - MLT1D LTR MaLR 0 505 91 862 242 100 64 chr6 5986592 5986952 -176428290 - MLT1J2 LTR MaLR 0 450 78 315 231 34 60 chr6 5988214 5988331 -176426911 + MIR SINE MIR 49 162 -100 797 311 59 11 chr6 5988744 5989200 -176426042 + L2 LINE L2 2034 2511 -803 237 275 165 0 chr6 5989636 5989745 -176425497 + HsTC2 DNA Tc2 1 127 -1771 2754 208 59 0 chr6 5989761 5990352 -176424890 + HsTC2 DNA Tc2 1273 1898 0 181 289 132 18 chr6 5990484 5990598 -176424644 + L2 LINE L2 3187 3313 0 65 74 0 0 chr6 5992061 5992196 -176423046 + AT_rich Low_complexity Low_complexity 1 135 0 438 272 43 19 chr6 5992218 5992380 -176422862 - MIR3 SINE MIR -9 199 34 351 278 75 100 chr6 5992523 5992610 -176422632 - Charlie8 DNA MER1_type -106 235 147 1754 160 3 39 chr6 5992610 5992916 -176422326 - AluJb SINE Alu 0 312 18 351 278 75 100 chr6 5992916 5993069 -176422173 - Charlie8 DNA MER1_type -194 147 1 2089 109 0 7 chr6 5993087 5993433 -176421809 + AluSg SINE Alu 1 344 0 635 246 78 47 chr6 5994160 5994392 -176420850 - Charlie8 DNA MER1_type -2177 240 2 318 311 20 27 chr6 5995698 5995846 -176419396 + L2 LINE L2 2343 2489 -825 436 214 127 8 chr6 5995963 5996089 -176419153 - MER103 DNA DNA -7 159 19 210 358 45 11 chr6 5996244 5996423 -176418819 + L2 LINE L2 2601 2785 -529 992 238 135 67 chr6 5996560 5997086 -176418156 + L1MEc LINE L1 1297 1858 -4538 9342 109 8 0 chr6 5997179 5998454 -176416788 - HSMAR1 DNA Mariner 0 1287 3 1731 100 4 21 chr6 5999537 5999778 -176415464 + AluSc SINE Alu 63 299 -10 2300 136 87 0 chr6 6001733 6002124 -176413118 - MSTB1 LTR MaLR 0 432 8 436 344 60 5 chr6 6003666 6003881 -176411361 - Charlie8 DNA MER1_type -2136 281 55 181 320 181 41 chr6 6005212 6005677 -176409565 + L2 LINE L2 2446 2975 -339 284 279 52 19 chr6 6007091 6007245 -176407997 + L1MC4a LINE L1 5768 5926 -1882 264 298 25 19 chr6 6007424 6007582 -176407660 + L1MC4a LINE L1 5768 5926 -1882 2225 116 0 0 chr6 6009449 6009752 -176405490 + AluY SINE Alu 1 303 -8 1199 157 101 28 chr6 6010549 6010797 -176404445 + L1MD3 LINE L1 7730 7995 0 690 110 20 0 chr6 6011854 6011954 -176403288 + AluSg/x SINE Alu 204 305 -5 252 314 137 10 chr6 6012535 6012637 -176402605 + MIR SINE MIR 30 144 -64 255 283 43 0 chr6 6014182 6014274 -176400968 - MIR SINE MIR -13 249 154 442 60 60 0 chr6 6014275 6014342 -176400900 - AluSp/q SINE Alu -12 301 231 258 59 0 0 chr6 6014344 6014378 -176400864 - Alu SINE Alu -268 34 1 273 352 110 0 chr6 6014380 6014525 -176400717 - MIR SINE MIR -100 162 2 386 282 86 56 chr6 6015715 6016052 -176399190 - MLT1I LTR MaLR 0 409 63 213 154 0 0 chr6 6017736 6017775 -176397467 + (TA)n Simple_repeat Simple_repeat 1 39 0 204 208 21 0 chr6 6017878 6017926 -176397316 - L2 LINE L2 0 3313 3265 2389 85 0 16 chr6 6018292 6018608 -176396634 - AluY SINE Alu 0 311 1 282 229 16 41 chr6 6019232 6019360 -176395882 - MIR SINE MIR -18 190 67 2149 115 3 3 chr6 6019361 6019647 -176395595 + AluSx SINE Alu 1 286 -26 326 116 261 0 chr6 6019668 6019737 -176395505 + L1PA14 LINE L1 6075 6161 0 23 33 0 0 chr6 6020297 6020327 -176394915 + AT_rich Low_complexity Low_complexity 1 30 0 390 216 0 0 chr6 6020696 6020780 -176394462 + MIR SINE MIR 61 145 -63 1354 13 0 7 chr6 6021320 6021475 -176393767 + L1PA6 LINE L1 5995 6148 -6 714 189 24 18 chr6 6021594 6021763 -176393479 + MER5B DNA MER1_type 7 176 -2 359 312 35 24 chr6 6022313 6022483 -176392759 - MIR SINE MIR -70 192 21 1242 203 39 123 chr6 6022807 6023294 -176391948 + L1MC5 LINE L1 6692 7122 -839 2347 85 3 10 chr6 6023294 6023599 -176391643 + AluSp SINE Alu 1 303 -10 1242 203 39 123 chr6 6023599 6023707 -176391535 + L1MC5 LINE L1 7122 7237 -724 277 219 55 0 chr6 6023854 6023927 -176391315 + L1MC5 LINE L1 7311 7387 -574 25 0 0 0 chr6 6024179 6024204 -176391038 + AT_rich Low_complexity Low_complexity 1 25 0 457 301 96 0 chr6 6024505 6024734 -176390508 + L2 LINE L2 1452 1702 -1612 667 184 14 35 chr6 6024743 6024884 -176390358 + L1PA16 LINE L1 6027 6164 -2 483 218 29 24 chr6 6025162 6025332 -176389910 + L1 LINE L1 3128 3298 -2848 750 228 13 70 chr6 6027643 6027867 -176387375 + L1 LINE L1 3289 3493 -2653 869 165 0 0 chr6 6027867 6028000 -176387242 + FLAM_A SINE Alu 1 133 0 750 228 13 70 chr6 6028000 6028073 -176387169 + L1 LINE L1 3493 3569 -2577 2844 128 5 25 chr6 6028298 6028370 -176386872 + MER83 LTR ERV1 1 73 -375 2195 100 0 77 chr6 6028370 6028709 -176386533 + AluSq SINE Alu 1 313 0 2844 128 5 25 chr6 6028709 6029075 -176386167 + MER83 LTR ERV1 73 430 -18 274 378 94 55 chr6 6029128 6029403 -176385839 + L2 LINE L2 2985 3270 -2 2123 95 0 7 chr6 6030217 6030544 -176384698 + AluSc SINE Alu 1 325 0 1769 242 122 33 chr6 6030625 6031161 -176384081 - MLT1E2 LTR MaLR 0 626 34 2280 102 10 0 chr6 6031161 6031456 -176383786 + AluSg SINE Alu 1 298 -12 1769 242 122 33 chr6 6031456 6031494 -176383748 - MLT1E2 LTR MaLR -592 34 1 397 228 0 22 chr6 6033113 6033205 -176382037 + FLAM_A SINE Alu 44 133 0 291 242 63 90 chr6 6033353 6033576 -176381666 - HAL1 LINE L1 -1153 1354 1138 1319 175 10 31 chr6 6033609 6033916 -176381326 + MLT1A1 LTR MaLR 1 373 -1 287 303 49 25 chr6 6033920 6034042 -176381200 - LTR16C LTR ERVL -158 333 209 21 36 0 0 chr6 6034131 6034159 -176381083 + AT_rich Low_complexity Low_complexity 1 28 0 556 183 48 48 chr6 6034301 6034427 -176380815 + L1MC4 LINE L1 7599 7724 -318 317 203 0 0 chr6 6035262 6035321 -176379921 - L2 LINE L2 0 3313 3255 1906 158 10 0 chr6 6035527 6035818 -176379424 + AluJo SINE Alu 1 294 -18 1137 194 19 0 chr6 6035911 6036122 -176379120 - MER20 DNA MER1_type -4 215 1 1999 134 7 3 chr6 6036677 6036967 -176378275 + AluSp SINE Alu 1 291 -22 307 281 71 52 chr6 6037265 6037475 -176377767 - L2 LINE L2 -228 3085 2872 508 278 139 4 chr6 6039292 6039522 -176375720 + MIR SINE MIR 2 262 0 493 231 62 36 chr6 6039792 6039990 -176375252 + LTR33A LTR ERVL 26 175 -348 1798 161 3 16 chr6 6040274 6040585 -176374657 + AluJo SINE Alu 1 307 -5 2568 219 15 9 chr6 6040679 6041214 -176374028 - MLT1F LTR MaLR -2 540 3 283 346 43 68 chr6 6041788 6042227 -176373015 - L2 LINE L2 -38 3234 2807 224 254 0 48 chr6 6042667 6042730 -176372512 - MIR SINE MIR -8 254 195 192 125 0 0 chr6 6042951 6042983 -176372259 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr6 6044426 6044450 -176370792 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1590 207 63 67 chr6 6044657 6045164 -176370078 - MLT1D LTR MaLR 0 505 1 610 279 56 23 chr6 6045261 6045476 -176369766 + MIR SINE MIR 39 260 -2 447 336 27 55 chr6 6046169 6046425 -176368817 + L1MC/D LINE L1 5511 5759 -2049 616 207 166 24 chr6 6047153 6047322 -176367920 - MIR SINE MIR -50 212 20 22 0 0 0 chr6 6050246 6050268 -176364974 + GC_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 6051072 6051102 -176364140 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr6 6051674 6051706 -176363536 + AT_rich Low_complexity Low_complexity 1 32 0 319 289 11 56 chr6 6052685 6052865 -176362377 + CT-rich Low_complexity Low_complexity 5 176 0 186 200 0 0 chr6 6053551 6053586 -176361656 + L2 LINE L2 3150 3184 -88 234 0 0 0 chr6 6053735 6053761 -176361481 + (T)n Simple_repeat Simple_repeat 1 26 0 219 322 0 41 chr6 6055768 6055889 -176359353 + CT-rich Low_complexity Low_complexity 1 116 0 183 194 28 0 chr6 6056075 6056111 -176359131 + L2 LINE L2 3276 3312 -1 189 0 0 0 chr6 6056600 6056621 -176358621 + (GGA)n Simple_repeat Simple_repeat 1 21 0 440 117 13 0 chr6 6059893 6059970 -176355272 + (GA)n Simple_repeat Simple_repeat 2 79 0 288 0 0 0 chr6 6060579 6060611 -176354631 + (CA)n Simple_repeat Simple_repeat 1 32 0 239 238 38 0 chr6 6060613 6060693 -176354549 + (CG)n Simple_repeat Simple_repeat 1 83 0 230 203 0 14 chr6 6060988 6061057 -176354185 + (CA)n Simple_repeat Simple_repeat 2 69 0 25 0 0 0 chr6 6062289 6062314 -176352928 + GC_rich Low_complexity Low_complexity 1 25 0 197 275 0 58 chr6 6062812 6062881 -176352361 + MIR3 SINE MIR 133 197 -11 2026 96 48 0 chr6 6063743 6064035 -176351207 + AluSq SINE Alu 1 306 -7 1192 241 68 51 chr6 6064272 6064682 -176350560 + L1MC4 LINE L1 7624 8040 -2 350 280 206 41 chr6 6064693 6064911 -176350331 + L1M4 LINE L1 4980 5233 -913 378 0 0 0 chr6 6064949 6064991 -176350251 + (CA)n Simple_repeat Simple_repeat 2 43 0 2154 271 101 24 chr6 6065069 6065948 -176349294 - L1MC4 LINE L1 -459 7583 6637 691 292 111 48 chr6 6066227 6066704 -176348538 - L1MEc LINE L1 -3445 3095 2649 1918 158 3 0 chr6 6066704 6067008 -176348234 + AluSx SINE Alu 1 305 -7 691 292 111 48 chr6 6067008 6067562 -176347680 - L1MEc LINE L1 -3891 2649 2025 571 307 112 68 chr6 6067564 6067849 -176347393 - L1MEc LINE L1 -4604 1936 1626 959 164 31 0 chr6 6067849 6068008 -176347234 - FRAM SINE Alu -2 164 1 571 307 112 68 chr6 6068008 6068132 -176347110 - L1MEc LINE L1 -4914 1626 1509 5879 146 28 9 chr6 6068162 6068665 -176346577 - L1MA9 LINE L1 0 6312 5820 285 89 0 0 chr6 6068665 6068710 -176346532 + (CA)n Simple_repeat Simple_repeat 1 45 0 5879 146 28 9 chr6 6068710 6069832 -176345410 - L1MA9 LINE L1 -492 5820 4655 7094 158 92 68 chr6 6070044 6070508 -176344734 - L1MC3 LINE L1 0 7785 7334 1256 190 99 74 chr6 6070508 6070871 -176344371 + MLT1A2 LTR MaLR 1 372 -2 7094 158 92 68 chr6 6070871 6070966 -176344276 - L1MC3 LINE L1 -451 7334 7243 272 250 0 25 chr6 6070966 6071046 -176344196 - MLT1F1 LTR MaLR -442 125 48 7094 158 92 68 chr6 6071046 6072065 -176343177 - L1MC3 LINE L1 -542 7243 6087 1458 162 38 22 chr6 6072189 6072503 -176342739 - MER33 DNA MER1_type 0 324 6 330 26 0 0 chr6 6073329 6073368 -176341874 + (TG)n Simple_repeat Simple_repeat 2 40 0 343 268 33 72 chr6 6073768 6073921 -176341321 + MIR SINE MIR 34 180 -82 2129 173 36 51 chr6 6074826 6075300 -176339942 + MLT1C LTR MaLR 1 467 0 341 100 0 17 chr6 6075906 6075966 -176339276 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 947 87 16 33 chr6 6075968 6076151 -176339091 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 594 75 0 0 chr6 6076156 6076236 -176339006 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 1103 182 82 82 chr6 6076238 6076518 -176338724 - AluJo SINE Alu -32 280 1 1800 164 0 0 chr6 6076544 6076837 -176338405 - AluJb SINE Alu -19 293 1 208 305 0 49 chr6 6076876 6076958 -176338284 + MIR3 SINE MIR 125 202 -6 217 194 21 161 chr6 6077144 6077237 -176338005 + MIR3 SINE MIR 122 201 -7 266 326 62 16 chr6 6077354 6077483 -176337759 - L2 LINE L2 -27 3245 3111 2048 168 89 39 chr6 6077573 6078013 -176337229 - MLT1C LTR MaLR 0 467 6 183 291 35 35 chr6 6078674 6078760 -176336482 - L2 LINE L2 -733 2581 2496 638 224 26 13 chr6 6078969 6079125 -176336117 + Charlie8 DNA MER1_type 102 259 -2158 198 103 0 0 chr6 6080585 6080614 -176334628 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 2826 77 66 16 chr6 6080822 6081249 -176333993 - LTR7 LTR ERV1 -2 448 1 2675 66 45 13 chr6 6081249 6081629 -176333613 - HERVH LTR ERV1 0 7713 7322 1426 115 23 9 chr6 6081627 6081844 -176333398 - HERVH LTR ERV1 -1894 5819 5600 * 4236 153 12 1 chr6 6081845 6082500 -176332742 - HERVH LTR ERV1 -2564 5149 4488 3497 105 10 2 chr6 6082498 6083002 -176332240 - HERVH LTR ERV1 -3714 3999 3492 * 890 143 27 0 chr6 6082992 6083139 -176332103 - HERVH LTR ERV1 -4423 3290 3140 * 17118 101 36 25 chr6 6083109 6086197 -176329045 - HERVH LTR ERV1 -4709 3004 1 2740 89 60 17 chr6 6086199 6086613 -176328629 - LTR7 LTR ERV1 -2 448 17 583 256 0 0 chr6 6087715 6087832 -176327410 - MER94 DNA DNA -2 132 16 773 180 6 0 chr6 6088942 6089109 -176326133 + (CAT)n Simple_repeat Simple_repeat 1 168 0 3461 67 2 7 chr6 6089111 6089561 -176325681 - LTR7 LTR ERV1 -2 448 1 213 94 0 0 chr6 6089562 6089594 -176325648 + (CAT)n Simple_repeat Simple_repeat 3 34 0 629 316 59 30 chr6 6089712 6090016 -176325226 + L3 LINE CR1 1251 1563 -14 1230 146 68 5 chr6 6090094 6090300 -176324942 + MER20 DNA MER1_type 1 219 0 12220 34 0 0 chr6 6090517 6092719 -176322523 - L1PA4 LINE L1 0 6155 3951 566 246 8 0 chr6 6092969 6093099 -176322143 - MER94 DNA DNA 0 134 4 444 279 147 35 chr6 6094297 6094536 -176320706 + MIR SINE MIR 2 255 -7 278 359 92 0 chr6 6094579 6094721 -176320521 + L2 LINE L2 3117 3271 -1 562 176 27 148 chr6 6094924 6095180 -176320062 + LTR16A1 LTR ERVL 1 225 -232 266 295 21 53 chr6 6096004 6096099 -176319143 - MIR3 SINE MIR -17 191 100 583 120 25 96 chr6 6098719 6099623 -176315619 + (TA)n Simple_repeat Simple_repeat 1 840 0 277 301 14 0 chr6 6099646 6099789 -176315453 + (TA)n Simple_repeat Simple_repeat 1 145 0 641 323 155 17 chr6 6099913 6100616 -176314626 - L2 LINE L2 -474 2840 2041 254 301 88 18 chr6 6100618 6100731 -176314511 + L2 LINE L2 3192 3312 -1 189 325 39 13 chr6 6100784 6100861 -176314381 - L2 LINE L2 -1376 1938 1860 2296 84 0 7 chr6 6101259 6101546 -176313696 - AluY SINE Alu -26 285 1 456 263 36 22 chr6 6101710 6101934 -176313308 - L1MC4a LINE L1 -1785 6023 5797 245 315 63 23 chr6 6101985 6102287 -176312955 - L1MC4a LINE L1 -1099 5047 4734 317 280 106 34 chr6 6102308 6102544 -176312698 - L1MC4a LINE L1 -1438 4708 4456 216 0 0 0 chr6 6102544 6102568 -176312674 + (T)n Simple_repeat Simple_repeat 1 24 0 869 251 81 36 chr6 6102725 6103259 -176311983 - L1MC5 LINE L1 -50 7911 7354 233 266 55 37 chr6 6103322 6103431 -176311811 - HAL1b LINE L1 -742 606 496 21 0 0 0 chr6 6103778 6103799 -176311443 + AT_rich Low_complexity Low_complexity 1 21 0 329 269 0 0 chr6 6106768 6106835 -176308407 + MER5A DNA MER1_type 9 75 -114 599 107 0 0 chr6 6106838 6106922 -176308320 + AluS SINE Alu 1 84 -228 182 208 21 0 chr6 6108528 6108576 -176306666 + GA-rich Low_complexity Low_complexity 4 52 0 466 266 31 44 chr6 6109177 6109359 -176305883 + MER5A DNA MER1_type 3 178 0 236 275 0 0 chr6 6112008 6112077 -176303165 - MER113 DNA MER1_type? -118 403 335 234 371 19 0 chr6 6112157 6112262 -176302980 + L2 LINE L2 2903 3009 -263 466 256 80 23 chr6 6112634 6112896 -176302346 - L1MC5 LINE L1 -48 7913 7637 22 56 0 0 chr6 6112896 6112932 -176302310 + AT_rich Low_complexity Low_complexity 1 36 0 5683 96 11 13 chr6 6113010 6113560 -176301682 - L1PB1 LINE L1 0 6151 5602 2271 83 3 23 chr6 6113560 6113861 -176301381 - AluSc SINE Alu -14 295 1 5683 96 11 13 chr6 6113861 6114205 -176301037 - L1PB1 LINE L1 -549 5602 5259 973 267 80 60 chr6 6114370 6114424 -176300818 - L1MEd LINE L1 -4868 1251 1200 2421 87 0 0 chr6 6114424 6114724 -176300518 - AluY SINE Alu -11 300 1 973 267 80 60 chr6 6114724 6115676 -176299566 - L1MEd LINE L1 -4919 1200 323 225 226 97 11 chr6 6115822 6115915 -176299327 - L1MEd LINE L1 -5941 178 78 435 288 161 15 chr6 6115959 6116233 -176299009 + L1MC4a LINE L1 5575 5888 -1920 24 0 0 0 chr6 6116265 6116289 -176298953 + AT_rich Low_complexity Low_complexity 1 24 0 2844 126 11 7 chr6 6116653 6117098 -176298144 - L1PA11 LINE L1 -1 6173 5727 603 59 24 0 chr6 6117889 6117974 -176297268 - L1PA6 LINE L1 -2 6152 6066 17375 93 7 4 chr6 6117974 6120449 -176294793 - HERVK9 LTR ERVK -1810 4106 1625 4235 103 12 21 chr6 6120450 6121117 -176294125 - HERVK9 LTR ERVK -5255 661 1 2975 118 51 8 chr6 6121117 6121607 -176293635 - MER9 LTR ERVK 0 511 1 2839 3 0 16 chr6 6121643 6121959 -176293283 - AluYa5 SINE Alu 0 311 1 21435 125 13 17 chr6 6121959 6122488 -176292754 - L1P LINE L1 -2530 3616 3087 2290 113 0 6 chr6 6122488 6122799 -176292443 - AluY SINE Alu -2 309 1 21435 125 13 17 chr6 6122799 6125888 -176289354 - L1P LINE L1 -3059 3087 11 279 54 0 0 chr6 6126070 6126107 -176289135 + (TCC)n Simple_repeat Simple_repeat 1 37 0 1516 169 66 0 chr6 6126107 6126380 -176288862 - AluY SINE Alu -20 291 1 324 242 78 13 chr6 6126817 6126970 -176288272 + L1ME LINE L1 5508 5670 -451 1442 247 53 40 chr6 6127015 6127545 -176287697 - MER74A LTR ERVL 0 558 22 689 190 27 2 chr6 6127548 6127719 -176287523 - L1MA4 LINE L1 -190 6114 5942 818 159 14 7 chr6 6127815 6127960 -176287282 + MER47A DNA MER2_type 5 150 -216 470 265 67 76 chr6 6127961 6128340 -176286902 + L1MEc LINE L1 2167 2499 -3716 930 294 73 38 chr6 6128370 6129678 -176285564 + L1MEc LINE L1 2714 4068 -2147 8549 145 11 6 chr6 6129694 6132338 -176282904 + L1MA2 LINE L1 3652 6304 0 33 0 0 0 chr6 6132341 6132374 -176282868 + AT_rich Low_complexity Low_complexity 1 33 0 328 343 41 0 chr6 6132536 6132781 -176282461 + L1MEc LINE L1 4864 5118 -1097 227 264 35 11 chr6 6133126 6133213 -176282029 - MLT1K LTR MaLR -15 573 485 675 214 7 89 chr6 6133239 6133459 -176281783 - MIR SINE MIR -35 227 33 234 0 0 0 chr6 6133535 6133561 -176281681 + (CA)n Simple_repeat Simple_repeat 2 27 0 385 335 76 57 chr6 6133708 6134288 -176280954 - L2 LINE L2 -396 2918 2328 644 246 214 23 chr6 6134301 6134688 -176280554 - LTR67 LTR ERVL 0 557 97 1510 164 15 107 chr6 6135677 6136079 -176279163 - MLT1A1 LTR MaLR 0 365 1 1769 215 11 5 chr6 6136878 6137246 -176277996 + MLT1A2 LTR MaLR 1 370 -4 2750 125 28 0 chr6 6138225 6138656 -176276586 + L1PB3 LINE L1 5711 6153 -1 614 233 126 6 chr6 6138788 6138947 -176276295 - MER5A DNA MER1_type 0 189 12 218 261 72 43 chr6 6139017 6139086 -176276156 - L2 LINE L2 0 3272 3202 209 182 45 154 chr6 6140068 6140178 -176275064 - L2 LINE L2 -20 3252 3155 2035 179 16 40 chr6 6140180 6140604 -176274638 + MLT2D LTR ERVL 1 414 0 200 189 0 0 chr6 6141504 6141541 -176273701 + (TG)n Simple_repeat Simple_repeat 2 38 0 202 346 0 0 chr6 6141643 6141695 -176273547 + L2 LINE L2 3215 3266 -6 225 0 0 0 chr6 6141795 6141820 -176273422 + (CA)n Simple_repeat Simple_repeat 2 26 0 246 136 0 0 chr6 6141894 6141938 -176273304 + (GA)n Simple_repeat Simple_repeat 1 44 0 672 195 94 25 chr6 6141996 6142155 -176273087 - MER5B DNA MER1_type -4 174 5 774 159 6 38 chr6 6142157 6142339 -176272903 + MER33 DNA MER1_type 1 166 -100 1357 212 104 51 chr6 6142340 6142793 -176272449 + MLT1D LTR MaLR 1 477 -28 460 191 17 9 chr6 6142792 6142907 -176272335 + MER33 DNA MER1_type 209 324 0 * 4221 179 38 5 chr6 6143519 6144316 -176270926 + MER54A LTR ERVL 75 897 -4 1197 282 153 7 chr6 6145868 6146473 -176268769 + L2 LINE L2 2612 3307 -6 1449 185 46 60 chr6 6147258 6147712 -176267530 - L1ME2 LINE L1 -114 6050 5603 334 130 0 29 chr6 6147712 6147781 -176267461 + (TA)n Simple_repeat Simple_repeat 2 68 0 1243 68 0 0 chr6 6147790 6147952 -176267290 + AluY SINE Alu 150 311 0 253 250 0 0 chr6 6148075 6148159 -176267083 + L1MC4 LINE L1 6620 6703 -1339 4580 243 51 35 chr6 6148200 6149218 -176266024 - L1ME2 LINE L1 -1083 5063 4063 2353 84 3 0 chr6 6149218 6149527 -176265715 - AluY SINE Alu -1 310 1 4580 243 51 35 chr6 6149527 6149664 -176265578 - L1ME2 LINE L1 -2083 4063 3930 2140 111 3 0 chr6 6149664 6149962 -176265280 - AluSp SINE Alu -14 299 1 4580 243 51 35 chr6 6149962 6150658 -176264584 - L1ME2 LINE L1 -2216 3930 3181 5517 139 14 24 chr6 6150685 6152229 -176263013 - L1PA13 LINE L1 0 7601 6065 2046 133 3 0 chr6 6152229 6152522 -176262720 + AluSx SINE Alu 1 294 -18 5517 139 14 24 chr6 6152522 6152650 -176262592 - L1PA13 LINE L1 -1536 6065 5937 12880 199 17 11 chr6 6152666 6152677 -176262565 - L1PA13 LINE L1 -1668 5916 5907 306 0 0 0 chr6 6152677 6152711 -176262531 + (TTA)n Simple_repeat Simple_repeat 3 36 0 13518 28 0 0 chr6 6152711 6155063 -176260179 - L1PA4 LINE L1 -18 6137 3784 12880 199 17 11 chr6 6155063 6157349 -176257893 - L1PA13 LINE L1 -1677 5907 3582 2119 139 0 0 chr6 6157349 6157650 -176257592 - AluSx SINE Alu -11 301 1 12880 199 17 11 chr6 6157650 6158807 -176256435 - L1PA13 LINE L1 -4002 3582 2434 1126 198 0 25 chr6 6158888 6159125 -176256117 - L1PA13 LINE L1 -7350 231 1 6040 145 31 0 chr6 6159243 6160638 -176254604 - L1MA1 LINE L1 0 7721 6275 * 18956 168 38 36 chr6 6160637 6165421 -176249821 - L1MA1 LINE L1 -2691 4874 93 198 0 0 0 chr6 6165421 6165443 -176249799 + (TG)n Simple_repeat Simple_repeat 2 23 0 18956 168 38 36 chr6 6165443 6165523 -176249719 - L1MA1 LINE L1 -7472 93 15 339 125 0 0 chr6 6165566 6165622 -176249620 - MADE1 DNA Mariner -24 56 1 2151 243 46 35 chr6 6165627 6166312 -176248930 - L1MEc LINE L1 -3148 3067 2404 2224 132 0 0 chr6 6166312 6166622 -176248620 - AluSq SINE Alu -3 310 1 2151 243 46 35 chr6 6166622 6166841 -176248401 - L1MEc LINE L1 -3811 2404 2189 697 244 94 23 chr6 6166889 6167188 -176248054 - L1MEc LINE L1 -4356 2040 1721 22572 108 11 10 chr6 6167221 6171710 -176243532 - L1PA7 LINE L1 0 6154 1665 21 36 0 0 chr6 6172037 6172065 -176243177 + AT_rich Low_complexity Low_complexity 1 28 0 2074 116 7 7 chr6 6172156 6172458 -176242784 - AluSc SINE Alu -7 302 1 710 245 116 45 chr6 6172539 6172944 -176242298 - L1MC4 LINE L1 0 8042 7524 2055 174 133 4 chr6 6172965 6173437 -176241805 - L1MA4A LINE L1 -25 6278 5746 738 294 52 55 chr6 6173442 6173806 -176241436 - L1M2 LINE L1 -5874 975 613 251 360 11 0 chr6 6173909 6173998 -176241244 - L1M2 LINE L1 -6072 777 688 1832 188 35 0 chr6 6173998 6174344 -176240898 + MSTB LTR MaLR 1 358 -68 240 161 16 16 chr6 6174393 6174455 -176240787 + MSTB LTR MaLR 365 426 -2 274 136 0 51 chr6 6174457 6174516 -176240726 + MSTB-int LTR MaLR 1 56 -1595 6236 190 50 64 chr6 6174516 6176201 -176239041 + MER52A LTR ERV1 1 1754 -1 7379 172 70 18 chr6 6176203 6177722 -176237520 + MSTB-int LTR MaLR 54 1651 0 1715 184 7 0 chr6 6177722 6178027 -176237215 + MSTB LTR MaLR 1 307 -119 1503 201 14 3 chr6 6178026 6178314 -176236928 + MSTB LTR MaLR 136 426 0 * 1964 253 13 0 chr6 6178427 6178901 -176236341 - L1M2 LINE L1 -6368 481 2 2421 241 71 53 chr6 6178904 6179844 -176235398 - L1MC4a LINE L1 -348 7460 6504 2708 263 138 30 chr6 6180453 6181543 -176233699 - MER69 DNA AcHobo -1316 1210 4 6012 119 28 10 chr6 6182432 6183655 -176231587 - L1MA3 LINE L1 0 6305 5062 736 194 8 0 chr6 6183744 6183873 -176231369 - FLAM_A SINE Alu -3 130 1 289 319 44 55 chr6 6185741 6185923 -176229319 - L3 LINE CR1 -5 1572 1393 1557 269 75 24 chr6 6187271 6187821 -176227421 + MLT1E LTR MaLR 16 593 0 2127 139 0 0 chr6 6187835 6188136 -176227106 - AluSx SINE Alu -11 301 1 839 193 36 107 chr6 6188162 6188499 -176226743 - L1ME3A LINE L1 -101 6069 5757 588 214 53 0 chr6 6188503 6188634 -176226608 - L1ME3A LINE L1 -507 5663 5526 221 301 0 14 chr6 6190475 6190548 -176224694 + L3 LINE CR1 1142 1213 -364 1826 250 43 19 chr6 6190737 6190795 -176224447 - MLT1H1 LTR MaLR -1 554 499 941 149 85 11 chr6 6190795 6190983 -176224259 + L1MA4A LINE L1 6102 6303 0 1826 250 43 19 chr6 6190983 6191464 -176223778 - MLT1H1 LTR MaLR -56 499 2 218 293 0 32 chr6 6192870 6192993 -176222249 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 544 13 53 0 chr6 6193405 6193480 -176221762 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 241 278 41 0 chr6 6193838 6193935 -176221307 - L1MC4 LINE L1 0 8042 7942 14434 28 2 0 chr6 6193945 6196608 -176218634 - L1PA3 LINE L1 -2 6153 3486 336 220 264 0 chr6 6196616 6196707 -176218535 + MER117 DNA MER1_type 41 155 -42 384 258 47 57 chr6 6199636 6199797 -176215445 - MIR3 SINE MIR -66 142 15 3324 83 32 17 chr6 6199856 6200323 -176214919 + L1PB1 LINE L1 5678 6151 0 2862 156 4 28 chr6 6201866 6202373 -176212869 + L1MA6 LINE L1 5801 6295 -5 1860 208 11 19 chr6 6202397 6202772 -176212470 + MLT1A2 LTR MaLR 1 372 -2 743 298 146 22 chr6 6203801 6204170 -176211072 + L3 LINE CR1 1072 1486 -91 203 286 0 0 chr6 6204386 6204428 -176210814 + L2 LINE L2 3255 3296 -17 648 295 16 21 chr6 6204453 6204643 -176210599 + MIR SINE MIR 3 191 -71 301 303 50 0 chr6 6205599 6205698 -176209544 + MIR SINE MIR 41 144 -118 600 102 11 0 chr6 6206355 6206443 -176208799 + L1MA5 LINE L1 6206 6294 -6 244 386 16 16 chr6 6206922 6207049 -176208193 - MIR3 SINE MIR -44 164 38 1095 216 9 5 chr6 6207403 6207621 -176207621 - MER20 DNA MER1_type 0 219 1 280 253 62 88 chr6 6209708 6209902 -176205340 + MER3 DNA MER1_type 21 209 0 * 1066 183 0 11 chr6 6209902 6209937 -176205305 - MER3 DNA MER1_type -164 45 13 808 220 30 0 chr6 6209938 6210106 -176205136 - MIR SINE MIR -68 194 22 441 274 61 76 chr6 6210151 6210414 -176204828 - MIR SINE MIR -3 259 1 242 214 214 0 chr6 6211281 6211379 -176203863 + MIR3 SINE MIR 12 130 -78 2499 75 0 0 chr6 6211906 6212211 -176203031 - AluY SINE Alu -4 307 3 325 306 76 38 chr6 6212507 6212664 -176202578 - MER91A DNA MER1_type -30 166 4 2401 98 0 0 chr6 6213007 6213314 -176201928 + AluSx SINE Alu 1 307 -5 320 117 0 50 chr6 6213330 6213416 -176201826 - Alu SINE Alu 0 301 234 494 198 48 32 chr6 6213516 6213642 -176201600 + Tigger3(Golem) DNA MER2_type 2840 2967 -62 920 198 25 13 chr6 6214011 6214249 -176200993 + Charlie5 DNA MER1_type 2341 2581 -31 2203 103 13 3 chr6 6214509 6214810 -176200432 - AluSg SINE Alu -6 304 1 234 0 0 0 chr6 6215066 6215092 -176200150 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 239 0 0 31 chr6 6215182 6215214 -176200028 + (TG)n Simple_repeat Simple_repeat 2 32 0 2363 147 56 19 chr6 6215214 6215628 -176199614 - MSTB1 LTR MaLR -3 429 1 329 267 82 52 chr6 6217639 6217871 -176197371 + L1MEd LINE L1 2 240 -5879 1870 238 51 11 chr6 6217906 6218564 -176196678 - L1MB5 LINE L1 0 6174 5254 319 308 197 0 chr6 6219432 6219549 -176195693 + MER91C DNA MER1_type 1 140 0 21 57 0 0 chr6 6219775 6219810 -176195432 + AT_rich Low_complexity Low_complexity 1 35 0 2592 155 77 37 chr6 6219840 6220457 -176194785 - MER4B LTR ERV1 0 779 1 711 191 23 8 chr6 6220504 6220635 -176194607 - MER41C LTR ERV1 -421 133 1 375 278 39 13 chr6 6220875 6221045 -176194197 + L1ME LINE L1 34 207 -5863 294 206 8 135 chr6 6221078 6221204 -176194038 + L1MEc LINE L1 20 129 -6267 1600 303 45 5 chr6 6221264 6221826 -176193416 + L1MEc LINE L1 136 719 -5677 1422 179 64 87 chr6 6222079 6222770 -176192472 + LTR49-int LTR ERV1 1546 2251 -4012 2361 100 0 6 chr6 6222770 6223081 -176192161 + AluSg1 SINE Alu 1 309 0 1422 179 64 87 chr6 6223081 6223121 -176192121 + LTR49-int LTR ERV1 2251 3835 -2428 572 179 90 94 chr6 6223379 6223602 -176191640 + LTR49-int LTR ERV1 3511 3732 -2866 2505 211 80 50 chr6 6223692 6225122 -176190120 + LTR49-int LTR ERV1 2472 5093 -1137 27429 50 5 4 chr6 6225341 6228769 -176186473 + L1P LINE L1 905 4334 -1812 3037 9 3 11 chr6 6228779 6229127 -176186115 - L1HS LINE L1 0 6155 5811 20794 36 2 0 chr6 6229227 6231723 -176183519 + L1P LINE L1 1639 4137 -2009 21 0 0 0 chr6 6231841 6231862 -176183380 + GC_rich Low_complexity Low_complexity 1 21 0 22920 36 1 1 chr6 6231882 6235308 -176179934 + L1PA4 LINE L1 2729 6155 0 327 177 0 0 chr6 6235954 6236016 -176179226 + Alu SINE Alu 240 301 0 208 235 0 0 chr6 6236489 6236540 -176178702 + MIR SINE MIR 211 261 -1 2275 64 30 3 chr6 6236659 6236955 -176178287 - AluY SINE Alu -7 304 1 2235 56 0 0 chr6 6236957 6237227 -176178015 - AluY SINE Alu -8 303 34 915 137 0 0 chr6 6237446 6237570 -176177672 - AluSq/x SINE Alu -189 124 1 270 0 0 0 chr6 6238458 6238488 -176176754 + (TG)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr6 6238487 6238515 -176176727 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 509 346 21 5 chr6 6239642 6239830 -176175412 - MIR SINE MIR -67 195 5 357 340 74 28 chr6 6239762 6239977 -176175265 + MIR SINE MIR 17 241 -21 * 4948 105 42 16 chr6 6240266 6241009 -176174233 - L1PA13 LINE L1 -6 6157 5396 665 84 176 8 chr6 6241009 6241128 -176174114 + L1PA13 LINE L1 5254 5392 -776 2247 95 0 3 chr6 6241135 6241430 -176173812 + L1PA14 LINE L1 5858 6151 -10 189 0 0 0 chr6 6241442 6241463 -176173779 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 413 203 17 34 chr6 6241623 6241800 -176173442 + CT-rich Low_complexity Low_complexity 5 178 0 799 256 39 17 chr6 6243014 6243248 -176171994 + MIR SINE MIR 15 253 -9 835 221 17 43 chr6 6243758 6243989 -176171253 + L1ME3 LINE L1 5937 6161 -1 189 0 0 0 chr6 6244261 6244282 -176170960 + (T)n Simple_repeat Simple_repeat 1 21 0 183 184 0 0 chr6 6244298 6244336 -176170906 + (CA)n Simple_repeat Simple_repeat 1 38 0 683 195 53 35 chr6 6245968 6246137 -176169105 + MER5B DNA MER1_type 6 177 -1 411 263 219 0 chr6 6246234 6246371 -176168871 + MER5A DNA MER1_type 16 182 -7 362 237 13 0 chr6 6246437 6246520 -176168722 - MER81 DNA DNA -30 84 1 1190 167 28 19 chr6 6246524 6246740 -176168502 + MER20 DNA MER1_type 2 219 0 231 267 23 23 chr6 6248206 6248292 -176166950 + MIR SINE MIR 55 140 -68 1351 263 173 6 chr6 6248363 6249086 -176166156 + L2 LINE L2 2461 3312 -1 299 229 64 9 chr6 6249083 6249192 -176166050 - MIR SINE MIR -85 177 63 * 2269 105 0 3 chr6 6249387 6249683 -176165559 - AluSx SINE Alu -17 295 1 2282 91 0 0 chr6 6250338 6250624 -176164618 - AluSx SINE Alu -5 307 22 448 197 0 0 chr6 6250840 6250943 -176164299 - MER5A DNA MER1_type -83 106 4 2320 117 0 0 chr6 6251045 6251353 -176163889 + AluSx SINE Alu 1 308 -4 182 312 56 32 chr6 6251926 6252051 -176163191 - MIR SINE MIR -91 171 44 359 212 34 51 chr6 6252528 6252646 -176162596 - MER103 DNA DNA -47 119 4 442 267 0 0 chr6 6253227 6253343 -176161899 - MIR SINE MIR -10 252 137 325 277 75 0 chr6 6254348 6254442 -176160800 + L2 LINE L2 3178 3278 -35 243 231 0 0 chr6 6255207 6255259 -176159983 - MIR SINE MIR -10 252 201 289 380 72 0 chr6 6255666 6256085 -176159157 - L2 LINE L2 -1230 2084 1636 180 310 79 49 chr6 6257066 6257269 -176157973 + L2 LINE L2 2897 3105 -167 183 313 54 9 chr6 6258044 6258156 -176157086 + L2 LINE L2 2899 3015 -257 547 259 109 85 chr6 6259411 6259828 -176155414 + MLT1L LTR MaLR 110 611 -4 410 306 14 7 chr6 6260149 6260293 -176154949 + MIR SINE MIR 108 252 -10 206 229 0 21 chr6 6260411 6260459 -176154783 - MER5B DNA MER1_type -19 159 113 298 335 96 20 chr6 6261029 6261226 -176154016 - MIR SINE MIR -4 258 47 213 244 58 47 chr6 6261886 6261972 -176153270 + MER5B DNA MER1_type 2 88 -90 180 219 49 0 chr6 6262025 6262066 -176153176 + MIR SINE MIR 72 114 -148 43627 36 22 6 chr6 6262067 6268189 -176147053 - L1PA3 LINE L1 0 6172 1 462 315 89 52 chr6 6268781 6269460 -176145782 - L2 LINE L2 -92 3180 2446 202 205 0 0 chr6 6269735 6269774 -176145468 + (TG)n Simple_repeat Simple_repeat 1 39 0 503 328 51 0 chr6 6271743 6271920 -176143322 + MIR SINE MIR 5 190 -72 2210 123 0 0 chr6 6274335 6274628 -176140614 + AluSc SINE Alu 1 293 -16 251 368 46 33 chr6 6275491 6275643 -176139599 - L2 LINE L2 -1 3271 3118 331 198 74 0 chr6 6275651 6275732 -176139510 + MIR SINE MIR 164 250 -12 487 246 50 40 chr6 6276041 6276145 -176139097 - MIR SINE MIR -5 257 156 2544 46 0 13 chr6 6276145 6276448 -176138794 + AluY SINE Alu 1 299 -12 487 246 50 40 chr6 6276448 6276556 -176138686 - MIR SINE MIR -106 156 50 1758 159 57 0 chr6 6277222 6277505 -176137737 + AluJb SINE Alu 1 299 -13 216 0 0 0 chr6 6278641 6278665 -176136577 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 671 121 30 0 chr6 6278668 6278767 -176136475 - FLAM_C SINE Alu -27 116 15 920 169 31 73 chr6 6278881 6279142 -176136100 - L1MA7 LINE L1 0 6291 6042 272 301 21 11 chr6 6279310 6279403 -176135839 + L2 LINE L2 3175 3268 -4 1263 221 43 24 chr6 6280150 6280721 -176134521 + MLT1E1 LTR MaLR 9 645 -9 192 40 0 0 chr6 6280886 6280911 -176134331 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 205 153 0 85 chr6 6282714 6282773 -176132469 + A-rich Low_complexity Low_complexity 2 55 0 573 188 92 61 chr6 6283568 6283797 -176131445 - MER20B DNA MER1_type 0 783 548 6134 223 57 39 chr6 6283891 6285578 -176129664 + L1M4 LINE L1 14 1936 -1069 4113 190 31 18 chr6 6285746 6286879 -176128363 + L1MB7 LINE L1 4963 6107 -77 1746 147 25 21 chr6 6286880 6287165 -176128077 + AluJb SINE Alu 1 286 -26 23 0 0 0 chr6 6287260 6287283 -176127959 + AT_rich Low_complexity Low_complexity 1 23 0 403 109 16 0 chr6 6287283 6287347 -176127895 - Alu SINE Alu -15 294 230 270 191 63 0 chr6 6287450 6287513 -176127729 + AluJ/FRAM SINE Alu 232 298 -4 225 155 0 184 chr6 6287525 6287596 -176127646 + L1MB7 LINE L1 6095 6177 -7 216 0 0 0 chr6 6287596 6287620 -176127622 + (TA)n Simple_repeat Simple_repeat 2 25 0 1835 84 0 145 chr6 6287620 6287965 -176127277 - AluY SINE Alu -6 295 1 225 155 0 184 chr6 6287965 6287995 -176127247 + L1MB7 LINE L1 6175 6178 -6 2101 131 0 16 chr6 6287996 6288302 -176126940 - AluSx SINE Alu -11 301 1 352 272 243 6 chr6 6288320 6288489 -176126753 + MIR SINE MIR 20 228 -34 43787 33 22 1 chr6 6288936 6294962 -176120280 + L1PA3 LINE L1 1 6154 -1 21 0 0 0 chr6 6294962 6294983 -176120259 + AT_rich Low_complexity Low_complexity 1 21 0 185 368 18 35 chr6 6295218 6295332 -176119910 - L2 LINE L2 -20 3252 3141 235 276 17 0 chr6 6296555 6296613 -176118629 + C-rich Low_complexity Low_complexity 4 62 0 592 294 10 30 chr6 6296699 6296896 -176118346 - MIR SINE MIR -49 213 21 462 238 119 7 chr6 6297234 6297377 -176117865 - MIR SINE MIR -96 166 8 345 75 0 0 chr6 6297812 6297865 -176117377 + (TG)n Simple_repeat Simple_repeat 2 54 0 486 215 189 5 chr6 6298749 6298937 -176116305 + MIR SINE MIR 39 256 -6 21 57 0 0 chr6 6301513 6301548 -176113694 + AT_rich Low_complexity Low_complexity 1 35 0 1834 177 26 10 chr6 6302769 6303074 -176112168 - AluJo SINE Alu -2 310 1 478 257 193 0 chr6 6303551 6303691 -176111551 + MER5A DNA MER1_type 21 187 -2 2073 124 10 0 chr6 6305736 6306026 -176109216 + AluSx SINE Alu 13 305 -7 180 152 0 0 chr6 6306480 6306513 -176108729 + GA-rich Low_complexity Low_complexity 2 34 0 24 0 0 0 chr6 6306670 6306694 -176108548 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 61 0 chr6 6306779 6306845 -176108397 + HAL1b LINE L1 110 179 -1169 10875 194 75 3 chr6 6306859 6311576 -176103666 + L1PBa LINE L1 6 5061 -1801 989 241 126 34 chr6 6311619 6312151 -176103091 + HAL1b LINE L1 547 1127 -221 2908 230 29 27 chr6 6312197 6313585 -176101657 + L1ME1 LINE L1 4776 6161 -5 413 304 95 86 chr6 6314765 6315124 -176100118 + L2 LINE L2 2911 3272 0 2657 227 80 53 chr6 6315228 6315987 -176099255 + L1ME2 LINE L1 4633 5370 -794 189 0 0 0 chr6 6315987 6316008 -176099234 + (TA)n Simple_repeat Simple_repeat 1 21 0 2657 227 80 53 chr6 6316008 6316752 -176098490 + L1ME2 LINE L1 5370 6164 0 204 318 34 23 chr6 6317025 6317113 -176098129 + L2 LINE L2 3224 3312 -1 207 333 129 11 chr6 6317789 6317882 -176097360 + MIR SINE MIR 34 137 -125 433 322 134 0 chr6 6320195 6320344 -176094898 + L2 LINE L2 3104 3272 0 774 161 0 37 chr6 6320362 6320611 -176094631 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 349 293 47 9 chr6 6320888 6320994 -176094248 + MIR SINE MIR 25 134 -74 314 340 29 0 chr6 6321989 6322092 -176093150 - MIR SINE MIR -64 144 39 217 280 0 0 chr6 6322209 6322259 -176092983 - MIR SINE MIR -111 151 102 612 244 30 30 chr6 6322271 6322439 -176092803 + MER20 DNA MER1_type 13 180 -39 2070 102 47 4 chr6 6322512 6322787 -176092455 - AluSp SINE Alu -26 287 1 236 301 12 48 chr6 6324917 6325000 -176090242 + MIR3 SINE MIR 6 85 -123 339 173 0 27 chr6 6329001 6329076 -176086166 + L1MC5 LINE L1 7135 7207 -754 467 225 52 147 chr6 6329206 6329905 -176085337 + L1MC5 LINE L1 7276 7907 -54 235 269 34 63 chr6 6329941 6330116 -176085126 + L1MC4a LINE L1 4490 4659 -1487 2032 118 56 0 chr6 6330140 6330427 -176084815 + AluSx SINE Alu 1 303 -9 274 248 186 9 chr6 6330533 6330646 -176084596 + MLT1H LTR MaLR 43 175 -374 232 198 78 103 chr6 6330866 6330982 -176084260 + MLT1H LTR MaLR 437 549 0 642 274 94 34 chr6 6331282 6331778 -176083464 + L1MC4a LINE L1 5367 5447 -704 724 206 96 48 chr6 6332525 6332734 -176082508 - MIR SINE MIR -24 238 20 273 260 0 14 chr6 6332753 6332826 -176082416 + L2 LINE L2 3199 3270 -2 27 29 0 0 chr6 6333077 6333111 -176082131 + AT_rich Low_complexity Low_complexity 1 34 0 246 32 0 0 chr6 6335270 6335301 -176079941 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 182 294 69 29 chr6 6335436 6335538 -176079704 + MIR SINE MIR 37 142 -66 195 286 0 18 chr6 6335585 6335641 -176079601 - L2 LINE L2 -5 3267 3213 213 292 0 0 chr6 6336292 6336340 -176078902 + L2 LINE L2 3177 3224 -48 2343 110 0 0 chr6 6338220 6338530 -176076712 - AluSg SINE Alu 0 310 1 477 163 122 0 chr6 6338564 6338662 -176076580 - FLAM_A SINE Alu -13 129 20 701 181 84 0 chr6 6338711 6338866 -176076376 + MER5A DNA MER1_type 1 168 -21 190 125 31 0 chr6 6338840 6338872 -176076370 - MER5B DNA MER1_type -131 47 15 * 330 299 104 44 chr6 6339846 6340164 -176075078 + L2 LINE L2 1274 1610 -1704 * 791 210 30 0 chr6 6340159 6340326 -176074916 + MER5B DNA MER1_type 7 178 0 1362 290 181 29 chr6 6340326 6341251 -176073991 + L2 LINE L2 1609 2673 -641 452 290 246 6 chr6 6341707 6342028 -176073214 + L2 LINE L2 2040 2437 -877 880 158 0 0 chr6 6342242 6342375 -176072867 + AluJo SINE Alu 2 134 -178 365 100 17 0 chr6 6343203 6343263 -176071979 + MADE1 DNA Mariner 3 63 -17 1467 166 93 18 chr6 6343495 6343773 -176071469 - AluJo SINE Alu -13 299 1 540 238 71 8 chr6 6345391 6345517 -176069725 - L2 LINE L2 -1 3312 3179 567 270 54 32 chr6 6345539 6345724 -176069518 - MIR SINE MIR -64 198 10 253 362 21 11 chr6 6345750 6345844 -176069398 + MIR SINE MIR 36 130 -78 2133 126 0 7 chr6 6345949 6346251 -176068991 - AluSq SINE Alu -12 301 2 257 297 126 18 chr6 6346423 6346534 -176068708 + MIR SINE MIR 61 183 -79 604 239 35 78 chr6 6346913 6346960 -176068282 + MER58A DNA MER1_type 5 53 -2367 2254 79 4 0 chr6 6346960 6347273 -176067969 - AluY SINE Alu 0 314 1 604 239 35 78 chr6 6347273 6347454 -176067788 + MER58A DNA MER1_type 53 224 0 300 205 63 87 chr6 6347845 6347972 -176067270 - MIR SINE MIR -67 141 18 3536 143 5 0 chr6 6349857 6350410 -176064832 + MER41D LTR ERV1 2 557 0 387 295 38 0 chr6 6351398 6351503 -176063739 + L2 LINE L2 3200 3308 -5 360 257 121 51 chr6 6352281 6352538 -176062704 - L2 LINE L2 -553 2761 2487 286 219 19 86 chr6 6352561 6352612 -176062630 - L2 LINE L2 -1 3312 3268 2000 128 4 0 chr6 6352612 6352929 -176062313 - AluSx SINE Alu 0 318 1 286 219 19 86 chr6 6352929 6352980 -176062262 - L2 LINE L2 -45 3268 3215 602 240 116 25 chr6 6353389 6353798 -176061444 + LTR33A LTR ERVL 9 498 -25 501 274 8 0 chr6 6353817 6353941 -176061301 - MIR SINE MIR -113 149 25 191 155 121 17 chr6 6353937 6353995 -176061247 + MIR SINE MIR 84 147 -115 * 1026 139 19 48 chr6 6354169 6354378 -176060864 + MER49 LTR ERV1 5 207 -716 2208 4 0 4 chr6 6354383 6354656 -176060586 + AluYa5 SINE Alu 70 341 0 2337 101 0 3 chr6 6355190 6355496 -176059746 + AluSq SINE Alu 9 313 0 343 310 49 27 chr6 6355559 6355791 -176059451 + L1ME LINE L1 5424 5659 -462 261 342 0 0 chr6 6355868 6355944 -176059298 + MIR3 SINE MIR 112 187 -21 213 39 0 0 chr6 6356900 6356926 -176058316 + (TTA)n Simple_repeat Simple_repeat 2 27 0 941 235 42 89 chr6 6357132 6357801 -176057441 + L1ME LINE L1 522 1155 -4925 2073 127 50 14 chr6 6358211 6358573 -176056669 - THE1C LTR MaLR 0 375 1 301 313 70 35 chr6 6359080 6359278 -176055964 + MIR SINE MIR 42 251 -11 1991 135 3 10 chr6 6360251 6360554 -176054688 + AluSx SINE Alu 1 301 -11 246 250 29 29 chr6 6360614 6360718 -176054524 - MLT1L LTR MaLR -36 579 476 337 261 48 106 chr6 6361106 6361154 -176054088 - MIR3 SINE MIR -10 198 149 1963 128 3 23 chr6 6361154 6361459 -176053783 + AluSq SINE Alu 1 299 -14 337 261 48 106 chr6 6361459 6361598 -176053644 - MIR3 SINE MIR -59 149 22 2162 102 0 3 chr6 6362580 6362875 -176052367 - AluSx SINE Alu -18 294 1 21 36 0 0 chr6 6363836 6363864 -176051378 + AT_rich Low_complexity Low_complexity 1 28 0 1166 277 78 23 chr6 6364812 6365289 -176049953 - MLT1J LTR MaLR -2 509 7 2675 164 42 17 chr6 6366587 6367130 -176048112 + MER89 LTR ERV1 3 559 0 350 293 25 51 chr6 6367474 6367631 -176047611 + MER5A DNA MER1_type 1 153 -36 25 0 0 0 chr6 6367963 6367988 -176047254 + AT_rich Low_complexity Low_complexity 1 25 0 207 269 46 65 chr6 6369536 6369644 -176045598 + L2 LINE L2 3198 3303 -10 279 376 48 0 chr6 6369895 6370020 -176045222 + MIR SINE MIR 16 146 -62 599 245 74 106 chr6 6370589 6371153 -176044089 - MLT1G1 LTR MaLR 0 595 6 284 250 0 11 chr6 6371276 6371364 -176043878 + L1MC4 LINE L1 6614 6700 -1342 2091 60 26 0 chr6 6372547 6372812 -176042430 + AluY SINE Alu 1 272 -39 508 256 141 0 chr6 6373130 6373286 -176041956 - MIR SINE MIR -10 252 75 219 69 0 0 chr6 6373347 6373376 -176041866 + (CA)n Simple_repeat Simple_repeat 2 30 0 515 284 0 16 chr6 6374074 6374257 -176040985 + (CA)n Simple_repeat Simple_repeat 1 180 0 822 154 51 0 chr6 6374265 6374421 -176040821 + L1MB2 LINE L1 6005 6168 -3 1656 227 30 59 chr6 6375795 6376372 -176038870 + MER68 LTR ERV1 3 562 0 1801 180 26 10 chr6 6378019 6378324 -176036918 - AluJo SINE Alu -2 310 1 455 264 193 0 chr6 6378801 6378941 -176036301 + MER5A DNA MER1_type 21 187 -2 2050 128 10 0 chr6 6380986 6381275 -176033967 + AluSx SINE Alu 13 304 -8 180 152 0 0 chr6 6381729 6381762 -176033480 + GA-rich Low_complexity Low_complexity 2 34 0 24 0 0 0 chr6 6381919 6381943 -176033299 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 61 0 chr6 6382028 6382094 -176033148 + HAL1b LINE L1 110 179 -1169 10878 194 74 3 chr6 6382108 6386827 -176028415 + L1PBa LINE L1 6 5061 -1801 989 241 126 34 chr6 6386870 6387402 -176027840 + HAL1b LINE L1 547 1127 -221 2930 229 29 27 chr6 6387448 6388836 -176026406 + L1ME1 LINE L1 4776 6161 -5 413 304 95 86 chr6 6390016 6390375 -176024867 + L2 LINE L2 2911 3272 0 2769 232 55 50 chr6 6390479 6392000 -176023242 + L1ME2 LINE L1 4633 6164 0 204 318 34 23 chr6 6392272 6392360 -176022882 + L2 LINE L2 3224 3312 -1 207 333 129 11 chr6 6393036 6393129 -176022113 + MIR SINE MIR 34 137 -125 433 322 134 0 chr6 6395453 6395602 -176019640 + L2 LINE L2 3104 3272 0 774 161 0 37 chr6 6395620 6395869 -176019373 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 349 293 47 9 chr6 6396146 6396252 -176018990 + MIR SINE MIR 25 134 -74 314 340 29 0 chr6 6397247 6397350 -176017892 - MIR SINE MIR -64 144 39 217 280 0 0 chr6 6397467 6397517 -176017725 - MIR SINE MIR -111 151 102 612 244 30 30 chr6 6397529 6397697 -176017545 + MER20 DNA MER1_type 13 180 -39 2070 102 47 4 chr6 6397770 6398045 -176017197 - AluSp SINE Alu -26 287 1 235 301 12 48 chr6 6400175 6400258 -176014984 + MIR3 SINE MIR 6 85 -123 379 173 0 27 chr6 6404259 6404334 -176010908 + L1MC5 LINE L1 7135 7207 -754 706 217 63 146 chr6 6404464 6405189 -176010053 + L1MC5 LINE L1 7276 7940 -21 299 269 57 57 chr6 6405181 6405374 -176009868 + L1MC4a LINE L1 4467 4659 -1487 * 2022 118 56 0 chr6 6405398 6405685 -176009557 + AluSx SINE Alu 1 303 -9 317 248 186 9 chr6 6405791 6405904 -176009338 + MLT1H LTR MaLR 43 175 -374 277 198 78 103 chr6 6406124 6406240 -176009002 + MLT1H LTR MaLR 437 549 0 238 278 9 37 chr6 6406338 6406446 -176008796 + L1MC4a LINE L1 4878 4982 -1164 827 265 83 54 chr6 6406530 6407036 -176008206 + L1MC4a LINE L1 5358 5479 -672 720 206 96 48 chr6 6407783 6407992 -176007250 - MIR SINE MIR -24 238 20 275 260 0 14 chr6 6408011 6408084 -176007158 + L2 LINE L2 3199 3270 -2 27 29 0 0 chr6 6408335 6408369 -176006873 + AT_rich Low_complexity Low_complexity 1 34 0 246 32 0 0 chr6 6410528 6410559 -176004683 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 194 286 0 18 chr6 6410843 6410899 -176004343 - L2 LINE L2 -5 3267 3213 214 292 0 0 chr6 6411550 6411598 -176003644 + L2 LINE L2 3177 3224 -48 2344 110 0 0 chr6 6413478 6413788 -176001454 - AluSg SINE Alu 0 310 1 534 157 14 71 chr6 6413853 6413993 -176001249 - AluJo SINE Alu -89 223 92 621 165 94 0 chr6 6413995 6414122 -176001120 + MER5A DNA MER1_type 27 165 -24 183 156 31 0 chr6 6414099 6414131 -176001111 - MER5B DNA MER1_type -131 47 15 * 324 299 104 44 chr6 6415105 6415423 -175999819 + L2 LINE L2 1274 1610 -1704 * 793 210 30 0 chr6 6415418 6415585 -175999657 + MER5B DNA MER1_type 7 178 0 1335 293 179 28 chr6 6415585 6416510 -175998732 + L2 LINE L2 1609 2673 -641 416 293 246 6 chr6 6416966 6417287 -175997955 + L2 LINE L2 2040 2437 -877 872 158 0 0 chr6 6417501 6417634 -175997608 + AluJo SINE Alu 2 134 -178 393 100 17 0 chr6 6418462 6418522 -175996720 + MADE1 DNA Mariner 3 63 -17 1493 165 90 18 chr6 6418754 6419033 -175996209 - AluJo SINE Alu -13 299 1 532 238 71 8 chr6 6420651 6420777 -175994465 - L2 LINE L2 -1 3312 3179 554 270 54 32 chr6 6420799 6420984 -175994258 - MIR SINE MIR -64 198 10 245 362 21 11 chr6 6421010 6421104 -175994138 + MIR SINE MIR 36 130 -78 2165 119 0 7 chr6 6421209 6421511 -175993731 - AluSq SINE Alu -12 301 2 256 297 126 18 chr6 6421683 6421794 -175993448 + MIR SINE MIR 61 183 -79 691 239 35 78 chr6 6422173 6422220 -175993022 + MER58A DNA MER1_type 5 53 -2367 2265 79 4 0 chr6 6422220 6422533 -175992709 - AluY SINE Alu 0 314 1 691 239 35 78 chr6 6422533 6422714 -175992528 + MER58A DNA MER1_type 53 224 0 300 205 63 87 chr6 6423105 6423232 -175992010 - MIR SINE MIR -67 141 18 3816 143 5 0 chr6 6425117 6425670 -175989572 + MER41D LTR ERV1 2 557 0 380 295 38 0 chr6 6426658 6426763 -175988479 + L2 LINE L2 3200 3308 -5 379 257 158 46 chr6 6427541 6427825 -175987417 - L2 LINE L2 -553 2761 2446 287 219 19 86 chr6 6427822 6427873 -175987369 - L2 LINE L2 -1 3312 3268 * 2002 128 4 0 chr6 6427873 6428190 -175987052 - AluSx SINE Alu 0 318 1 287 219 19 86 chr6 6428190 6428241 -175987001 - L2 LINE L2 -45 3268 3215 689 240 116 25 chr6 6428650 6429059 -175986183 + LTR33A LTR ERVL 9 498 -25 492 274 8 0 chr6 6429078 6429202 -175986040 - MIR SINE MIR -113 149 25 188 172 121 17 chr6 6429198 6429256 -175985986 + MIR SINE MIR 84 147 -115 * 5399 169 10 24 chr6 6429430 6429644 -175985598 + MER49 LTR ERV1 5 220 -703 2230 4 0 4 chr6 6429644 6429887 -175985355 + AluYa5 SINE Alu 70 311 0 5399 169 10 24 chr6 6429887 6430604 -175984638 + MER49 LTR ERV1 220 923 0 1013 235 169 20 chr6 6430642 6431033 -175984209 - L2 LINE L2 -10 3303 2855 503 224 241 11 chr6 6431274 6431448 -175983794 - L2 LINE L2 -448 2866 2653 440 160 0 0 chr6 6434082 6434157 -175981085 + MLT1E2 LTR MaLR 552 626 0 2412 79 0 3 chr6 6434233 6434538 -175980704 + AluY SINE Alu 1 304 -7 760 259 97 69 chr6 6434652 6434972 -175980270 + L1MC4 LINE L1 6749 7077 -965 381 252 36 9 chr6 6434987 6435098 -175980144 + L1MC4a LINE L1 7161 7274 -534 1627 231 53 17 chr6 6435115 6435530 -175979712 + LTR16A LTR ERVL 16 445 -5 1978 230 68 23 chr6 6435533 6436060 -175979182 + L1MC4 LINE L1 7351 7901 -141 1654 108 0 22 chr6 6437551 6437782 -175977460 + AluSg/x SINE Alu 69 294 -18 3906 153 59 23 chr6 6438154 6438637 -175976605 + MER50 LTR ERV1 1 518 -216 1909 146 42 0 chr6 6438637 6438924 -175976318 + AluSx SINE Alu 1 299 -13 3906 153 59 23 chr6 6438924 6439137 -175976105 + MER50 LTR ERV1 518 722 -12 4821 161 31 43 chr6 6440562 6441504 -175973738 - L1MA7 LINE L1 -39 6252 5323 258 32 0 0 chr6 6441953 6441984 -175973258 + (CA)n Simple_repeat Simple_repeat 2 32 0 458 301 45 0 chr6 6442991 6443147 -175972095 + MER103 DNA DNA 4 166 0 516 341 131 34 chr6 6443791 6444471 -175970771 + L2 LINE L2 1606 2351 -963 388 283 62 14 chr6 6444548 6444693 -175970549 + MIR SINE MIR 41 192 -70 244 332 48 40 chr6 6444801 6445051 -175970191 + L2 LINE L2 2397 2648 -666 717 139 0 0 chr6 6446232 6446354 -175968888 + (GGGA)n Simple_repeat Simple_repeat 3 124 0 383 58 0 0 chr6 6446586 6446638 -175968604 + L1PA15 LINE L1 6101 6152 -13 2754 72 69 8 chr6 6446657 6447034 -175968208 + MLT2A1 LTR ERVL 1 400 -44 281 197 14 0 chr6 6447034 6447105 -175968137 + (CA)n Simple_repeat Simple_repeat 2 73 0 328 148 0 0 chr6 6447105 6447159 -175968083 + MLT2A1 LTR ERVL 400 453 0 36623 33 18 1 chr6 6447265 6453290 -175961952 - L1PA3 LINE L1 0 6155 1 778 266 50 8 chr6 6454349 6454590 -175960652 + LTR16A LTR ERVL 200 450 0 2916 158 62 38 chr6 6454819 6455369 -175959873 - MER7C DNA MER2_type -39 563 1 312 306 60 75 chr6 6455431 6455683 -175959559 - L1M4 LINE L1 -1099 5047 4800 572 291 87 48 chr6 6455850 6455917 -175959325 - L1M4 LINE L1 -1528 4618 4555 1568 96 35 78 chr6 6455917 6456199 -175959043 - L1MA7 LINE L1 -10 6281 6012 572 291 87 48 chr6 6456199 6456928 -175958314 - L1M4 LINE L1 -1591 4555 3791 327 220 140 80 chr6 6456996 6457101 -175958141 + MER103 DNA DNA 2 120 -46 2027 143 7 3 chr6 6457101 6457402 -175957840 + AluSx SINE Alu 1 302 -10 327 220 140 80 chr6 6457402 6457446 -175957796 + MER103 DNA DNA 120 160 -6 192 279 66 142 chr6 6458851 6459034 -175956208 + MIR SINE MIR 74 242 -20 370 308 134 0 chr6 6459519 6459691 -175955551 + MIR SINE MIR 47 241 -21 1129 321 44 90 chr6 6460175 6460550 -175954692 - L3 LINE CR1 -7 1570 1179 2011 116 3 34 chr6 6460550 6460844 -175954398 - AluSx SINE Alu -27 285 1 1129 321 44 90 chr6 6460844 6461125 -175954117 - L3 LINE CR1 -398 1179 971 1742 136 0 39 chr6 6461125 6461405 -175953837 - AluSx SINE Alu -3 309 41 1129 321 44 90 chr6 6461405 6461728 -175953514 - L3 LINE CR1 -606 971 635 548 326 66 48 chr6 6461834 6462318 -175952924 - L2 LINE L2 -173 3099 2600 519 276 79 0 chr6 6462689 6462841 -175952401 + MER103 DNA DNA 1 164 -2 490 264 36 0 chr6 6462889 6462999 -175952243 + MIR SINE MIR 64 177 -85 207 100 0 0 chr6 6463025 6463055 -175952187 + (TTA)n Simple_repeat Simple_repeat 1 30 0 804 221 164 5 chr6 6463068 6463281 -175951961 + MIR SINE MIR 8 254 -8 209 139 42 14 chr6 6464105 6464177 -175951065 + (TA)n Simple_repeat Simple_repeat 2 75 0 335 126 82 0 chr6 6464190 6464349 -175950893 + (TA)n Simple_repeat Simple_repeat 1 172 0 243 163 43 21 chr6 6464438 6464579 -175950663 + (TA)n Simple_repeat Simple_repeat 1 144 0 2276 75 0 29 chr6 6464911 6465217 -175950025 + AluSc SINE Alu 1 297 -12 180 0 0 0 chr6 6465802 6465822 -175949420 + (T)n Simple_repeat Simple_repeat 1 20 0 2361 82 7 0 chr6 6466508 6466801 -175948441 - AluSq SINE Alu -18 295 1 273 301 58 122 chr6 6466967 6467343 -175947899 + L2 LINE L2 2920 3271 -1 585 0 0 0 chr6 6468600 6468665 -175946577 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr6 6468802 6468823 -175946419 + AT_rich Low_complexity Low_complexity 1 21 0 358 307 90 2 chr6 6469245 6469473 -175945769 - MIR SINE MIR -6 256 3 422 309 99 0 chr6 6470725 6470890 -175944352 - MIR3 SINE MIR -9 199 13 420 303 55 43 chr6 6471682 6471936 -175943306 - L2 LINE L2 -5 3308 3052 281 294 174 18 chr6 6472125 6472343 -175942899 + MARNA DNA Mariner 271 522 -64 202 275 0 29 chr6 6473351 6473420 -175941822 + C-rich Low_complexity Low_complexity 4 70 0 180 355 109 32 chr6 6473887 6473901 -175941341 + L2 LINE L2 1294 1305 -2009 1880 135 83 0 chr6 6473901 6474189 -175941053 - AluSx SINE Alu 0 312 1 180 355 109 32 chr6 6474189 6474394 -175940848 + L2 LINE L2 1305 1530 -1784 325 251 140 25 chr6 6474568 6474803 -175940439 + L2 LINE L2 1790 2051 -1263 619 351 11 24 chr6 6474817 6475199 -175940043 + L2 LINE L2 2175 2551 -763 281 316 95 30 chr6 6475206 6475374 -175939868 + L2 LINE L2 2654 2832 -482 698 199 33 7 chr6 6476464 6476615 -175938627 - LTR33A LTR ERVL 0 523 369 358 294 66 15 chr6 6476714 6476850 -175938392 - LTR33A LTR ERVL -318 205 63 2679 184 28 54 chr6 6476877 6477452 -175937790 - MER68 LTR ERV1 0 562 3 905 154 51 0 chr6 6478827 6478983 -175936259 - L1MB2 LINE L1 -3 6168 6005 499 290 0 16 chr6 6478991 6479174 -175936068 + (TG)n Simple_repeat Simple_repeat 1 180 0 255 61 0 0 chr6 6479872 6479905 -175935337 + (TG)n Simple_repeat Simple_repeat 2 34 0 492 256 141 0 chr6 6479966 6480122 -175935120 + MIR SINE MIR 75 252 -10 2206 53 23 0 chr6 6480439 6480705 -175934537 - AluY SINE Alu -39 272 1 329 178 0 109 chr6 6481875 6481976 -175933266 - L1MC4 LINE L1 -1339 6703 6614 707 227 99 147 chr6 6482099 6482663 -175932579 + MLT1H1 LTR MaLR 6 555 0 265 365 31 2 chr6 6483232 6483358 -175931884 - MIR SINE MIR -62 146 15 207 269 46 65 chr6 6483608 6483716 -175931526 - L2 LINE L2 -10 3303 3198 28 0 0 0 chr6 6485264 6485292 -175929950 + AT_rich Low_complexity Low_complexity 1 28 0 345 293 25 51 chr6 6485624 6485781 -175929461 - MER5A DNA MER1_type -36 153 1 2932 162 44 18 chr6 6486125 6486668 -175928574 - MER89 LTR ERV1 0 559 3 1333 277 78 23 chr6 6487965 6488442 -175926800 + MLT1J LTR MaLR 7 509 -2 21 36 0 0 chr6 6489390 6489418 -175925824 + AT_rich Low_complexity Low_complexity 1 28 0 2199 99 0 3 chr6 6490377 6490671 -175924571 + AluSx SINE Alu 1 293 -19 302 266 48 106 chr6 6491653 6491792 -175923450 + MIR3 SINE MIR 22 149 -59 1931 130 3 26 chr6 6491792 6492099 -175923143 - AluSq SINE Alu -13 300 1 302 266 48 106 chr6 6492099 6492147 -175923095 + MIR3 SINE MIR 149 198 -10 336 287 146 30 chr6 6492272 6492661 -175922581 + MLT1L LTR MaLR 163 580 -8 2063 128 0 10 chr6 6492699 6493003 -175922239 - AluSx SINE Alu -11 301 1 283 301 46 43 chr6 6494007 6494170 -175921072 - MIR SINE MIR -50 158 42 2248 127 50 14 chr6 6494677 6495039 -175920203 + THE1C LTR MaLR 1 375 0 1173 226 46 91 chr6 6495453 6496118 -175919124 - L1ME LINE L1 -4925 1653 1031 213 39 0 0 chr6 6496324 6496350 -175918892 + (TAA)n Simple_repeat Simple_repeat 2 27 0 257 342 0 0 chr6 6497306 6497382 -175917860 - MIR3 SINE MIR -21 187 112 407 293 77 87 chr6 6497456 6497754 -175917488 - L1ME LINE L1 -459 5662 5367 2333 101 0 3 chr6 6497754 6498060 -175917182 - AluSq SINE Alu 0 313 9 407 293 77 87 chr6 6498060 6498163 -175917079 - L1ME LINE L1 -754 5367 5265 2434 103 0 0 chr6 6498594 6498935 -175916307 - AluSx SINE Alu 0 342 2 387 340 48 50 chr6 6500069 6500489 -175914753 - L1ME LINE L1 -1077 5069 4651 2005 200 100 21 chr6 6501794 6502273 -175912969 + L1MC4 LINE L1 7306 7822 -220 295 333 28 14 chr6 6502279 6502420 -175912822 - MLT1J LTR MaLR -360 151 9 2299 94 0 7 chr6 6503603 6503911 -175911331 + AluSg SINE Alu 1 306 -4 1235 171 34 41 chr6 6504525 6504794 -175910448 - AluJo SINE Alu -45 267 1 2008 141 0 7 chr6 6505054 6505358 -175909884 + AluSx SINE Alu 1 302 -10 274 113 75 30 chr6 6505385 6505518 -175909724 + (CA)n Simple_repeat Simple_repeat 1 139 0 423 0 0 0 chr6 6505741 6505788 -175909454 + (CA)n Simple_repeat Simple_repeat 1 47 0 231 36 0 0 chr6 6506347 6506375 -175908867 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 234 240 60 0 chr6 6506457 6506557 -175908685 + (TA)n Simple_repeat Simple_repeat 2 107 0 493 299 38 53 chr6 6506569 6506834 -175908408 - MIR SINE MIR -5 257 1 297 51 0 0 chr6 6507261 6507300 -175907942 + (TG)n Simple_repeat Simple_repeat 2 40 0 253 170 94 0 chr6 6507898 6507951 -175907291 + MER53 DNA DNA 1 58 -131 572 189 134 0 chr6 6507989 6508116 -175907126 + MER53 DNA DNA 46 189 0 288 331 45 22 chr6 6508989 6509167 -175906075 + MIR SINE MIR 31 212 -50 3171 138 16 6 chr6 6511097 6511603 -175903639 - L1MC3 LINE L1 0 7785 7275 219 259 152 45 chr6 6512075 6512187 -175903055 - MIR SINE MIR -14 248 125 816 303 137 16 chr6 6512696 6513201 -175902041 + L1MC4a LINE L1 5264 5829 -1979 258 330 78 26 chr6 6515602 6515717 -175899525 - L2 LINE L2 -8 3264 3144 1751 73 8 24 chr6 6515940 6516186 -175899056 + MER75B DNA T2_type 1 242 -1 377 177 13 0 chr6 6516409 6516488 -175898754 + (TA)n Simple_repeat Simple_repeat 2 81 0 2098 301 93 31 chr6 6516499 6517683 -175897559 - L2 LINE L2 -167 3146 1896 305 250 0 24 chr6 6517684 6517740 -175897502 + MER94 DNA DNA 4 57 -77 1655 208 33 43 chr6 6517740 6518220 -175897022 - MLT1F LTR MaLR 0 542 5 306 243 14 14 chr6 6518229 6518303 -175896939 + MER94 DNA DNA 61 134 0 280 182 0 0 chr6 6518546 6518590 -175896652 + MLT1K LTR MaLR 434 477 -111 1157 159 67 24 chr6 6520497 6520705 -175894537 - MER20 DNA MER1_type 0 219 3 428 264 50 0 chr6 6520773 6520894 -175894348 - MIR3 SINE MIR -44 164 38 257 59 0 0 chr6 6521020 6521054 -175894188 + MADE1 DNA Mariner 47 80 0 353 143 0 29 chr6 6521107 6521177 -175894065 - MADE1 DNA Mariner -12 68 1 813 73 0 0 chr6 6521681 6521790 -175893452 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 240 111 0 0 chr6 6521794 6521830 -175893412 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr6 6522253 6522284 -175892958 + AT_rich Low_complexity Low_complexity 1 31 0 266 355 41 86 chr6 6522642 6522910 -175892332 - L2 LINE L2 -92 3180 2925 204 321 0 0 chr6 6523198 6523251 -175891991 - MER5A DNA MER1_type 0 189 137 2742 175 50 2 chr6 6523251 6523747 -175891495 + L1MB3 LINE L1 5662 6181 -2 15382 196 15 5 chr6 6523824 6528272 -175886970 + L1P5 LINE L1 1818 6373 -494 1184 239 68 23 chr6 6528691 6529085 -175886157 - L1ME3A LINE L1 -10 6160 5749 617 264 43 40 chr6 6529085 6529104 -175886138 - L2 LINE L2 -311 3002 2985 2314 92 3 10 chr6 6529104 6529410 -175885832 + AluSq SINE Alu 1 304 -9 617 264 43 40 chr6 6529410 6529650 -175885592 - L2 LINE L2 -328 2985 2744 1746 113 55 24 chr6 6529750 6530041 -175885201 - THE1C LTR MaLR -75 300 1 1810 150 32 0 chr6 6530073 6530353 -175884889 - AluJb SINE Alu -23 289 1 2007 128 3 0 chr6 6530546 6530835 -175884407 - AluSc SINE Alu -19 290 1 1233 311 12 50 chr6 6531803 6532285 -175882957 - L2 LINE L2 0 3272 2809 1054 155 22 43 chr6 6532339 6532571 -175882671 - AluJo SINE Alu 0 312 86 307 242 62 0 chr6 6532622 6532750 -175882492 + AluSp SINE Alu 15 150 -153 949 101 0 0 chr6 6532881 6533000 -175882242 - AluSq/x SINE Alu -193 119 1 632 210 8 0 chr6 6533007 6533131 -175882111 - FLAM_C SINE Alu -10 133 9 2240 105 0 7 chr6 6533146 6533451 -175881791 - AluSx SINE Alu -9 303 1 387 127 0 0 chr6 6533461 6533524 -175881718 + (ATG)n Simple_repeat Simple_repeat 3 65 0 228 242 48 48 chr6 6534112 6534174 -175881068 + L2 LINE L2 3025 3086 -186 2147 110 3 3 chr6 6534536 6534836 -175880406 + AluSx SINE Alu 2 301 -11 202 312 81 11 chr6 6534910 6535096 -175880146 + L2 LINE L2 2545 2743 -571 1637 119 12 0 chr6 6535097 6535341 -175879901 + L1PA16 LINE L1 5792 6038 -128 1316 92 6 6 chr6 6535341 6535515 -175879727 + AluSq SINE Alu 1 174 -139 384 243 29 10 chr6 6585619 6585722 -175829520 + MIR SINE MIR 109 213 -49 240 59 0 0 chr6 6586099 6586133 -175829109 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 249 371 46 7 chr6 6586595 6586746 -175828496 + L3 LINE CR1 631 787 -790 2363 162 22 20 chr6 6586833 6586925 -175828317 - L1M3 LINE L1 -677 5491 5401 2144 113 0 7 chr6 6586925 6587225 -175828017 - AluSx SINE Alu -14 298 1 2363 162 22 20 chr6 6587225 6587724 -175827518 - L1M3 LINE L1 -767 5401 4898 2023 139 0 0 chr6 6588522 6588810 -175826432 - AluSx SINE Alu -24 288 1 1661 273 65 27 chr6 6589052 6589579 -175825663 - MLT1H LTR MaLR 0 549 3 1082 299 25 0 chr6 6589582 6589903 -175825339 - LTR16C LTR ERVL -9 482 154 804 261 55 35 chr6 6590012 6590411 -175824831 - L2 LINE L2 -1366 1948 1542 397 296 148 23 chr6 6590423 6590680 -175824562 + L2 LINE L2 3023 3311 -2 367 252 58 0 chr6 6590942 6591045 -175824197 - L2 LINE L2 -1413 1901 1793 232 248 9 115 chr6 6592213 6592326 -175822916 + MIR SINE MIR 46 146 -62 264 122 0 0 chr6 6592595 6592636 -175822606 + (TTC)n Simple_repeat Simple_repeat 2 42 0 444 284 90 15 chr6 6593205 6593406 -175821836 - L2 LINE L2 -842 2472 2257 1016 142 0 44 chr6 6593406 6593589 -175821653 + FRAM SINE Alu 1 172 -4 353 264 74 50 chr6 6593873 6593994 -175821248 + L2 LINE L2 3190 3313 0 308 174 14 0 chr6 6594057 6594126 -175821116 - L1MC4 LINE L1 -2 8040 7971 2376 77 0 3 chr6 6594149 6594448 -175820794 - AluY SINE Alu -13 298 1 2032 116 0 10 chr6 6594462 6594754 -175820488 - AluSx SINE Alu -23 289 1 1254 220 148 6 chr6 6594767 6594825 -175820417 - L1MC4 LINE L1 -65 7977 7929 275 49 24 0 chr6 6594825 6594866 -175820376 + (CA)n Simple_repeat Simple_repeat 2 43 0 1254 220 148 6 chr6 6594866 6595152 -175820090 - L1MC4 LINE L1 -113 7929 7584 333 0 0 0 chr6 6595164 6595201 -175820041 + (T)n Simple_repeat Simple_repeat 1 37 0 235 296 148 11 chr6 6595997 6596186 -175819056 - L2 LINE L2 -1094 2220 2006 517 271 23 8 chr6 6597530 6597663 -175817579 - MER97c DNA MER1_type? -952 138 4 307 284 0 0 chr6 6598288 6598362 -175816880 + L2 LINE L2 3239 3312 -1 235 315 33 33 chr6 6598579 6598671 -175816571 + MIR3 SINE MIR 86 177 -31 21 0 0 0 chr6 6598976 6598997 -175816245 + AT_rich Low_complexity Low_complexity 1 21 0 2682 152 163 10 chr6 6599029 6599469 -175815773 + MLT2B3 LTR ERVL 2 522 -32 572 40 13 0 chr6 6599469 6599544 -175815698 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2682 152 163 10 chr6 6599544 6599583 -175815659 + MLT2B3 LTR ERVL 522 554 0 1614 104 22 0 chr6 6599746 6599968 -175815274 - L1PA8 LINE L1 -6 6166 5940 369 364 65 5 chr6 6600154 6600371 -175814871 - MIR SINE MIR -21 241 12 13999 131 18 6 chr6 6600935 6603315 -175811927 + Tigger1 DNA MER2_type 1 2418 0 3934 113 16 0 chr6 6604933 6605484 -175809758 + L1PB1 LINE L1 5584 6143 -8 227 257 14 40 chr6 6607538 6607612 -175807630 + CT-rich Low_complexity Low_complexity 4 75 0 2800 104 0 3 chr6 6607709 6608094 -175807148 + MER41B LTR ERV1 166 549 -86 2164 115 52 30 chr6 6608584 6608950 -175806292 + THE1C LTR MaLR 2 375 0 752 71 0 0 chr6 6610446 6610544 -175804698 + L1MA8 LINE L1 5998 6095 -196 261 286 98 9 chr6 6610934 6611046 -175804196 - MIR SINE MIR -22 240 119 325 321 37 0 chr6 6611192 6611301 -175803941 + L2 LINE L2 3200 3312 -1 1679 155 7 28 chr6 6611714 6612005 -175803237 - AluJb SINE Alu -27 285 1 2412 61 0 0 chr6 6613111 6613405 -175801837 + AluY SINE Alu 1 294 -17 229 343 82 29 chr6 6614012 6614219 -175801023 - L3b LINE CR1 -203 1380 1163 1885 205 130 53 chr6 6614924 6615431 -175799811 + MLT1H LTR MaLR 4 549 0 229 233 50 33 chr6 6615884 6615944 -175799298 + L2 LINE L2 3206 3266 -6 2118 135 3 0 chr6 6617042 6617345 -175797897 + AluSg SINE Alu 3 306 -4 388 262 40 51 chr6 6617380 6617590 -175797652 - MIR SINE MIR -24 238 23 500 297 92 24 chr6 6618111 6618181 -175797061 - MIR SINE MIR -6 256 192 597 45 0 124 chr6 6618181 6618270 -175796972 + MADE1 DNA Mariner 1 78 -2 500 297 92 24 chr6 6618270 6618430 -175796812 - MIR SINE MIR -70 192 15 2285 100 0 0 chr6 6618504 6618805 -175796437 - AluY SINE Alu -10 301 1 19820 29 2 2 chr6 6618957 6621301 -175793941 - L1P LINE L1 -931 5215 2872 380 132 26 13 chr6 6621403 6621479 -175793763 + MLT1D LTR MaLR 429 505 0 1868 191 132 4 chr6 6621479 6621940 -175793302 + L1MB7 LINE L1 5646 6165 -19 6236 64 0 4 chr6 6622062 6622809 -175792433 - L1PA8 LINE L1 -5 6167 5424 1661 84 0 28 chr6 6622809 6623060 -175792182 + L1PA8 LINE L1 5157 5400 -746 183 80 0 0 chr6 6625667 6625692 -175789550 + (CTCTG)n Simple_repeat Simple_repeat 2 26 0 3325 194 24 26 chr6 6625731 6626413 -175788829 + Tigger6a DNA MER2_type 1 680 -403 670 266 108 9 chr6 6626769 6626991 -175788251 - MIR SINE MIR -16 246 3 250 315 225 0 chr6 6627341 6627452 -175787790 - L2 LINE L2 0 3272 3137 320 58 43 14 chr6 6628985 6629054 -175786188 + (TA)n Simple_repeat Simple_repeat 1 71 0 188 333 120 26 chr6 6629999 6630116 -175785126 + L3 LINE CR1 1321 1448 -129 17330 28 2 0 chr6 6630694 6633396 -175781846 - L1PA3 LINE L1 0 6155 3452 1337 246 129 14 chr6 6633461 6633896 -175781346 + L1MC4 LINE L1 7375 7859 -183 2693 50 0 3 chr6 6633999 6634316 -175780926 - L1P2 LINE L1 -358 5796 5480 16072 27 0 0 chr6 6634316 6636862 -175778380 - L1PA3 LINE L1 0 6155 3606 2053 50 0 8 chr6 6637036 6637297 -175777945 - L1PA3 LINE L1 -2524 3622 3364 616 249 77 7 chr6 6637402 6637583 -175777659 - MER63 DNA MER1_type -19 1669 1 1253 263 134 10 chr6 6638377 6638788 -175776454 - LTR16B LTR ERVL 0 464 3 303 49 0 0 chr6 6639879 6639920 -175775322 + (TC)n Simple_repeat Simple_repeat 2 42 0 452 327 13 13 chr6 6640218 6640377 -175774865 - MIR SINE MIR -46 216 58 253 303 98 25 chr6 6640401 6640523 -175774719 - MIR SINE MIR -9 253 123 345 299 21 0 chr6 6642283 6642380 -175772862 + MER81 DNA DNA 1 99 -15 391 158 0 49 chr6 6644233 6644315 -175770927 - L1MC2 LINE L1 -13 6331 6254 718 231 0 0 chr6 6644332 6644497 -175770745 - FRAM SINE Alu 0 182 18 3972 147 143 114 chr6 6644508 6644973 -175770269 - L1MC3 LINE L1 -84 7701 7251 243 261 80 23 chr6 6644973 6645061 -175770181 - MLT1F1 LTR MaLR -440 127 35 3972 147 143 114 chr6 6645061 6645621 -175769621 - L1MC3 LINE L1 -534 7251 6557 21 36 0 0 chr6 6645935 6645963 -175769279 + AT_rich Low_complexity Low_complexity 1 28 0 741 93 19 28 chr6 6645966 6646073 -175769169 - L1MC1 LINE L1 0 6333 6228 17226 157 15 11 chr6 6646073 6648780 -175766462 - ERVL LTR ERVL -2300 3464 748 392 311 36 55 chr6 6648791 6649137 -175766105 + L1ME LINE L1 5385 5741 -421 8138 256 44 34 chr6 6649330 6650481 -175764761 + L1MB4 LINE L1 32 1170 -5212 2307 143 25 25 chr6 6650481 6650845 -175764397 - THE1B LTR MaLR 0 364 1 8138 256 44 34 chr6 6650845 6652714 -175762528 + L1MB4 LINE L1 1170 3018 -3364 23060 38 3 0 chr6 6652714 6656338 -175758904 + L1PA5 LINE L1 2513 6149 -5 8138 256 44 34 chr6 6656338 6657533 -175757709 + L1MB4 LINE L1 3018 4199 -2183 216 0 0 0 chr6 6657533 6657557 -175757685 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8138 256 44 34 chr6 6657557 6658518 -175756724 + L1MB4 LINE L1 4199 5403 -979 3172 214 28 14 chr6 6658521 6659337 -175755905 + L1MB4 LINE L1 5588 6415 -1 590 339 85 14 chr6 6659831 6660114 -175755128 + MLT1H1 LTR MaLR 1 303 -252 744 294 162 7 chr6 6660339 6660784 -175754458 - L1MC4a LINE L1 -1919 5889 5376 21 0 0 0 chr6 6660998 6661019 -175754223 + AT_rich Low_complexity Low_complexity 1 21 0 4420 160 9 12 chr6 6661109 6661963 -175753279 - L1PB4 LINE L1 -1 6155 5304 1636 239 16 74 chr6 6662024 6662394 -175752848 - L1ME2 LINE L1 -22 6142 5829 1966 190 130 66 chr6 6662394 6662969 -175752273 - LTR9 LTR ERV1 0 612 1 1636 239 16 74 chr6 6662969 6663284 -175751958 - L1ME2 LINE L1 -335 5829 5497 318 143 76 95 chr6 6663406 6663511 -175751731 - L1MC4a LINE L1 -913 5233 5131 22 0 0 0 chr6 6665563 6665585 -175749657 + AT_rich Low_complexity Low_complexity 1 22 0 3189 248 77 34 chr6 6665722 6666833 -175748409 + L1M4 LINE L1 39 1196 -5346 214 200 0 0 chr6 6666834 6666874 -175748368 + (TA)n Simple_repeat Simple_repeat 2 41 0 241 136 0 0 chr6 6666874 6666918 -175748324 + L1M4 LINE L1 1194 1237 -5305 4284 236 22 17 chr6 6666927 6668200 -175747042 + L1ME4a LINE L1 3867 5145 -1001 480 225 0 0 chr6 6668202 6668331 -175746911 + MLT2B3 LTR ERVL 1 129 -425 2845 26 0 4 chr6 6668331 6668730 -175746512 - L1P LINE L1 -730 5425 5028 6355 22 4 0 chr6 6668730 6669460 -175745782 + L1PA3 LINE L1 5419 6154 -1 1850 204 25 28 chr6 6669462 6669858 -175745384 + MLT2B3 LTR ERVL 122 516 -38 300 119 0 68 chr6 6669876 6669935 -175745307 + MLT2C2 LTR ERVL 407 461 -3 596 146 24 141 chr6 6669938 6670151 -175745091 + L1ME4a LINE L1 5143 5330 -816 1152 164 0 48 chr6 6670159 6670366 -175744876 + AluJo SINE Alu 95 291 -21 701 172 38 19 chr6 6670368 6670525 -175744717 + L1ME4a LINE L1 5323 5482 -702 490 242 160 50 chr6 6670628 6670909 -175744333 + L1ME4a LINE L1 5710 6021 -100 410 255 21 0 chr6 6671136 6671230 -175744012 + MIR3 SINE MIR 63 158 -50 1666 80 43 16 chr6 6671775 6672282 -175742960 - MER4A LTR ERV1 0 664 1 1220 222 102 21 chr6 6672353 6672785 -175742457 - MLT1C LTR MaLR 0 467 1 799 265 86 0 chr6 6672859 6673093 -175742149 - MIR SINE MIR 0 262 9 338 293 45 45 chr6 6673158 6673489 -175741753 + L1ME4a LINE L1 5552 5882 -239 4950 114 23 13 chr6 6674551 6675322 -175739920 + MER4E LTR ERV1 1 779 0 5000 34 0 0 chr6 6675873 6676464 -175738778 - LTR10C LTR ERV1 0 591 1 4152 175 28 49 chr6 6679618 6681096 -175734146 + L1MA9 LINE L1 4721 6176 -136 357 24 0 0 chr6 6681096 6681138 -175734104 + (CA)n Simple_repeat Simple_repeat 1 42 0 4152 175 28 49 chr6 6681138 6681251 -175733991 + L1MA9 LINE L1 6176 6290 -22 245 179 0 18 chr6 6681261 6681317 -175733925 + GA-rich Low_complexity Low_complexity 2 56 0 2081 233 49 60 chr6 6681325 6682324 -175732918 + L1ME3 LINE L1 5172 6157 -5 317 303 57 25 chr6 6682417 6682539 -175732703 + L2 LINE L2 3179 3304 -9 197 360 88 8 chr6 6682712 6682837 -175732405 - MER5A DNA MER1_type 0 189 55 666 265 85 51 chr6 6684623 6684917 -175730325 + L2 LINE L2 3010 3313 0 568 246 0 9 chr6 6685036 6685150 -175730092 + MER81 DNA DNA 1 113 -1 314 297 76 51 chr6 6685236 6685512 -175729730 + LTR33 LTR ERVL 236 518 -3 306 292 153 0 chr6 6685567 6685704 -175729538 + MIR SINE MIR 97 254 -8 207 100 0 0 chr6 6686392 6686422 -175728820 + (CA)n Simple_repeat Simple_repeat 1 30 0 679 169 80 85 chr6 6686569 6686770 -175728472 + MLT1C LTR MaLR 53 252 -215 1207 96 0 0 chr6 6686770 6686937 -175728305 - L1PA13 LINE L1 -485 5678 5512 3090 120 2 0 chr6 6686941 6687408 -175727834 + L1PA13 LINE L1 5694 6161 -2 576 249 124 5 chr6 6687423 6687624 -175727618 + MLT1C LTR MaLR 278 502 -3 336 275 144 6 chr6 6688567 6688734 -175726508 + LTR33 LTR ERVL 1 190 -331 328 288 25 0 chr6 6688822 6688940 -175726302 + LTR33 LTR ERVL 339 459 -62 216 303 67 22 chr6 6689133 6689222 -175726020 + MIR SINE MIR 110 202 -60 779 151 16 0 chr6 6690694 6690820 -175724422 + FRAM SINE Alu 19 146 -30 22 56 0 0 chr6 6690953 6690989 -175724253 + AT_rich Low_complexity Low_complexity 1 36 0 210 182 23 0 chr6 6691048 6691092 -175724150 + T-rich Low_complexity Low_complexity 4 48 0 2148 129 0 13 chr6 6691098 6691407 -175723835 - AluSx SINE Alu -7 305 1 223 245 19 19 chr6 6692277 6692330 -175722912 + L2 LINE L2 3214 3266 -6 655 174 174 6 chr6 6692443 6692604 -175722638 - MER5A DNA MER1_type 0 189 2 25 0 0 0 chr6 6692671 6692696 -175722546 + AT_rich Low_complexity Low_complexity 1 25 0 323 94 0 19 chr6 6696338 6696391 -175718851 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 1172 275 137 33 chr6 6697218 6698183 -175717059 + HAL1 LINE L1 812 1876 -631 236 277 0 42 chr6 6698624 6698743 -175716499 + HAL1b LINE L1 745 858 -490 180 200 0 0 chr6 6698848 6698888 -175716354 + GA-rich Low_complexity Low_complexity 4 43 0 315 257 59 0 chr6 6698951 6699052 -175716190 - LTR67 LTR ERVL -3 554 448 375 316 41 46 chr6 6699332 6699550 -175715692 - LTR67 LTR ERVL -296 261 45 22 0 0 0 chr6 6699829 6699851 -175715391 + AT_rich Low_complexity Low_complexity 1 22 0 490 225 11 0 chr6 6700446 6700535 -175714707 - L2 LINE L2 0 3272 3183 401 240 101 78 chr6 6700561 6700778 -175714464 + MIR SINE MIR 3 224 -38 284 357 35 28 chr6 6700851 6700994 -175714248 - L2 LINE L2 -180 3092 2949 523 296 138 13 chr6 6702243 6702561 -175712681 - L2 LINE L2 -1088 2226 1869 258 221 221 18 chr6 6702619 6702732 -175712510 - MIR SINE MIR -49 213 78 357 269 50 0 chr6 6703586 6703705 -175711537 + L1ME LINE L1 5619 5743 -378 566 75 12 12 chr6 6703705 6703785 -175711457 - MADE1 DNA Mariner 0 80 1 561 325 30 26 chr6 6703860 6704128 -175711114 - L1MC/D LINE L1 -2188 5689 5421 746 124 0 0 chr6 6704156 6704261 -175710981 + AluJb SINE Alu 9 113 -199 889 124 12 0 chr6 6704261 6704422 -175710820 + (GAAA)n Simple_repeat Simple_repeat 1 163 0 329 317 0 0 chr6 6704888 6705030 -175710212 - L1MC/D LINE L1 -1333 4882 4741 307 157 0 0 chr6 6705888 6705939 -175709303 - MLT-int LTR MaLR -1006 729 679 258 279 0 0 chr6 6706001 6706062 -175709180 - MLT1-int LTR MaLR -487 884 824 * 2074 194 37 31 chr6 6706051 6706536 -175708706 - MLT1-int LTR MaLR -660 711 224 1901 212 107 1 chr6 6706549 6707229 -175708013 - L1MEc LINE L1 -3423 2792 2071 40 59 0 0 chr6 6707287 6707355 -175707887 + AT_rich Low_complexity Low_complexity 1 68 0 875 258 65 108 chr6 6707431 6707911 -175707331 - LTR40b LTR ERVL 0 462 4 1087 238 34 3 chr6 6707914 6708251 -175706991 - HERVL40 LTR ERVL 0 5530 2784 270 330 45 17 chr6 6708120 6708296 -175706946 - MER89-int LTR ERV1 -291 6510 6330 * 256 275 78 60 chr6 6708225 6708508 -175706734 - HERVL40 LTR ERVL -256 2781 2740 * 513 263 51 110 chr6 6708675 6709029 -175706213 - HERVL40 LTR ERVL -328 2709 2377 2175 240 79 3 chr6 6709182 6709762 -175705480 - HERVL40 LTR ERVL -874 4656 1844 753 303 5 10 chr6 6709778 6709986 -175705256 - HERVL40 LTR ERVL -2159 3371 3165 2085 139 3 0 chr6 6712075 6712376 -175702866 + AluSq SINE Alu 2 303 -10 192 273 74 33 chr6 6714127 6714248 -175700994 + MER5A DNA MER1_type 43 168 -21 2107 114 29 0 chr6 6714531 6714811 -175700431 + AluSc SINE Alu 1 288 -21 416 332 44 22 chr6 6716608 6716879 -175698363 - L2 LINE L2 -191 3081 2805 2676 70 11 8 chr6 6717001 6717356 -175697886 + L1PA11 LINE L1 5819 6174 0 2371 89 3 3 chr6 6717613 6717916 -175697326 - AluSq SINE Alu -10 303 1 1427 140 91 7 chr6 6718465 6718750 -175696492 + L1MB2 LINE L1 5771 6079 -92 304 249 6 6 chr6 6719041 6719218 -175696024 + (CA)n Simple_repeat Simple_repeat 1 177 0 364 290 50 40 chr6 6719533 6719733 -175695509 - MIR SINE MIR -41 221 20 1741 60 5 0 chr6 6720152 6720367 -175694875 - L1PA5 LINE L1 -164 5990 5775 1049 52 0 15 chr6 6720367 6720501 -175694741 + L1PA5 LINE L1 6021 6154 0 1638 202 0 3 chr6 6721163 6721445 -175693797 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr6 6721450 6721477 -175693765 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 584 245 130 37 chr6 6721889 6722187 -175693055 - LTR16A1 LTR ERVL -2 455 155 253 232 0 0 chr6 6722397 6722453 -175692789 + MIR SINE MIR 129 184 -78 595 283 123 41 chr6 6724172 6725074 -175690168 + L1ME3A LINE L1 4562 5546 -747 386 241 208 70 chr6 6725242 6725612 -175689630 + MLT1H LTR MaLR 129 549 0 585 322 130 25 chr6 6725784 6726107 -175689135 + MLT1L LTR MaLR 215 571 -44 346 386 40 18 chr6 6726174 6726465 -175688777 + L1ME3A LINE L1 5655 5950 -220 594 229 8 0 chr6 6726647 6726769 -175688473 - FLAM_C SINE Alu -19 124 2 1316 214 106 106 chr6 6726772 6727271 -175687971 - MLT1F1 LTR MaLR -43 524 1 288 377 41 0 chr6 6729724 6729870 -175685372 + L3 LINE CR1 890 1041 -536 436 235 182 0 chr6 6730083 6730215 -175685027 + L3 LINE CR1 1049 1204 -373 399 311 82 25 chr6 6730328 6730572 -175684670 + L1ME LINE L1 5405 5662 -459 203 179 0 0 chr6 6730607 6730646 -175684596 + A-rich Low_complexity Low_complexity 1 39 0 447 338 64 0 chr6 6730690 6730909 -175684333 - MIR SINE MIR -7 255 23 219 225 62 25 chr6 6731028 6731108 -175684134 - L3 LINE CR1 -1377 200 118 243 0 0 0 chr6 6731296 6731323 -175683919 + (A)n Simple_repeat Simple_repeat 1 27 0 2042 89 64 11 chr6 6733228 6733375 -175681867 - AluSq SINE Alu -17 296 158 2419 96 0 0 chr6 6733375 6733676 -175681566 - AluSg SINE Alu -9 301 1 2042 89 64 11 chr6 6733676 6733809 -175681433 - AluSq SINE Alu -155 158 1 21 0 0 0 chr6 6733849 6733870 -175681372 + AT_rich Low_complexity Low_complexity 1 21 0 1692 149 7 55 chr6 6734127 6734416 -175680826 + AluJb SINE Alu 3 277 -35 233 268 0 18 chr6 6734419 6734475 -175680767 + GA-rich Low_complexity Low_complexity 4 58 0 312 66 33 33 chr6 6734475 6734536 -175680706 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 290 308 116 27 chr6 6735522 6735668 -175679574 - MIR3 SINE MIR -34 174 16 956 275 116 27 chr6 6735883 6736479 -175678763 + L2 LINE L2 2188 2836 -478 701 276 126 43 chr6 6736482 6737000 -175678242 - L1MEd LINE L1 -1005 5124 4542 668 265 157 13 chr6 6737006 6737383 -175677859 - L1MEd LINE L1 -2196 3933 3503 1240 168 10 14 chr6 6737384 6737593 -175677649 - AluJo SINE Alu -17 295 88 490 286 70 27 chr6 6737598 6738154 -175677088 - L1MEd LINE L1 -2630 3499 2920 315 302 71 8 chr6 6738286 6738412 -175676830 - L1MEd LINE L1 -5394 725 592 4267 136 18 44 chr6 6738858 6739653 -175675589 - L1MC1 LINE L1 0 6333 5560 198 0 0 0 chr6 6740733 6740755 -175674487 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1903 87 77 45 chr6 6740900 6741187 -175674055 - AluSq SINE Alu -17 296 1 1955 83 8 30 chr6 6741597 6741862 -175673380 + AluSg SINE Alu 42 300 -10 1099 109 0 0 chr6 6742442 6742589 -175672653 - AluSq/x SINE Alu -165 148 2 191 375 11 11 chr6 6744759 6744847 -175670395 + L2 LINE L2 1175 1262 -2052 647 249 98 21 chr6 6745101 6745427 -175669815 + HAL1 LINE L1 871 1221 -1286 229 280 0 0 chr6 6745427 6745477 -175669765 - MER45A DNA AcHobo -4 174 125 2131 115 0 3 chr6 6745489 6745775 -175669467 + AluSc SINE Alu 1 285 -24 1095 127 66 71 chr6 6745793 6746005 -175669237 + AluJo SINE Alu 20 230 -82 1184 168 172 27 chr6 6746014 6746276 -175668966 - AluJo SINE Alu -2 300 1 319 140 60 0 chr6 6746337 6746387 -175668855 + AluJo SINE Alu 235 287 -15 294 253 38 0 chr6 6746360 6746439 -175668803 - MER45A DNA AcHobo -35 143 62 * 909 177 100 15 chr6 6746629 6746900 -175668342 + MER33 DNA MER1_type 14 307 -17 357 257 61 20 chr6 6747037 6747185 -175668057 - LTR33A LTR ERVL -14 509 356 230 321 85 0 chr6 6747401 6747507 -175667735 - LTR33A LTR ERVL -350 173 59 703 260 120 53 chr6 6747557 6748123 -175667119 + HAL1 LINE L1 1884 2487 -20 409 273 44 108 chr6 6748620 6748964 -175666278 + MLT1I LTR MaLR 81 402 -7 1259 222 68 31 chr6 6749170 6749522 -175665720 - MLT1A1 LTR MaLR 0 365 1 878 67 0 0 chr6 6749859 6749964 -175665278 + AluY SINE Alu 196 300 -11 2339 103 3 0 chr6 6750242 6750552 -175664690 + AluSx SINE Alu 1 311 -1 1587 97 162 16 chr6 6750554 6750825 -175664417 + AluSx SINE Alu 2 308 0 487 306 44 14 chr6 6752567 6752792 -175662450 + MLT1J LTR MaLR 311 596 -19 233 127 28 70 chr6 6754397 6754468 -175660774 - L1MD2 LINE L1 -3 6356 6289 1802 226 108 26 chr6 6754580 6755155 -175660087 - L1MD2 LINE L1 -59 6300 5679 5484 244 90 15 chr6 6755170 6756886 -175658356 - L1MD2 LINE L1 -743 5403 3541 1748 252 23 50 chr6 6756886 6757461 -175657781 + MER68 LTR ERV1 2 560 -2 5484 244 90 15 chr6 6757461 6757565 -175657677 - L1MD2 LINE L1 -2605 3541 3446 2464 193 69 30 chr6 6757565 6758155 -175657087 - Tigger7 DNA MER2_type 0 2487 1 2826 239 19 35 chr6 6758155 6758368 -175656874 - L1MD2 LINE L1 -2699 3447 3232 1837 93 0 0 chr6 6758368 6758605 -175656637 - AluY SINE Alu 0 311 75 2826 239 19 35 chr6 6758605 6759124 -175656118 - L1MD2 LINE L1 -2914 3232 2706 1874 147 158 13 chr6 6759124 6759498 -175655744 - MSTA LTR MaLR 0 428 1 9511 124 36 39 chr6 6759498 6761081 -175654161 - MSTA-int LTR MaLR 0 1580 3 1966 144 137 13 chr6 6761083 6761464 -175653778 - MSTA LTR MaLR 0 428 1 2826 239 19 35 chr6 6761464 6761659 -175653583 - L1MD2 LINE L1 -3440 2706 2530 245 273 133 62 chr6 6761660 6761788 -175653454 - MIR SINE MIR -106 156 20 26 0 0 0 chr6 6762372 6762398 -175652844 + AT_rich Low_complexity Low_complexity 1 26 0 539 213 269 0 chr6 6763464 6763624 -175651618 + MER3 DNA MER1_type 1 203 -6 492 202 15 3 chr6 6763652 6763789 -175651453 - MER5A DNA MER1_type -14 175 3 1193 266 113 15 chr6 6763930 6764389 -175650853 + MER69 DNA AcHobo 214 717 -1809 1318 151 106 8 chr6 6764411 6764656 -175650586 - L1PA16 LINE L1 -9 6157 5889 1163 191 131 76 chr6 6764672 6765200 -175650042 + MER69 DNA AcHobo 1969 2525 -1 388 248 16 33 chr6 6765222 6765343 -175649899 + L2 LINE L2 3195 3313 0 1897 132 4 0 chr6 6767349 6767621 -175647621 + AluSc SINE Alu 37 309 0 390 42 0 0 chr6 6767621 6767669 -175647573 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 5469 180 41 27 chr6 6768249 6770367 -175644875 - L1MB4 LINE L1 -37 6143 4015 455 310 104 30 chr6 6770486 6770754 -175644488 + L1MEc LINE L1 245 532 -6075 302 235 98 15 chr6 6771166 6771298 -175643944 + L1MEc LINE L1 999 1141 -5466 * 1741 271 102 13 chr6 6771287 6772121 -175643121 + L1MEc LINE L1 950 2077 -4481 1169 251 44 17 chr6 6772327 6772622 -175642620 + LTR40a LTR ERVL 217 519 0 296 299 31 16 chr6 6772626 6772753 -175642489 + L1MEc LINE L1 2076 2204 -4403 310 156 45 58 chr6 6772753 6772907 -175642335 + (TTATA)n Simple_repeat Simple_repeat 3 154 0 904 190 85 63 chr6 6772924 6773240 -175642002 - MER33 DNA MER1_type 0 324 2 402 235 66 7 chr6 6773240 6773376 -175641866 + L1MEc LINE L1 2270 2413 -4194 514 255 85 7 chr6 6773594 6773747 -175641495 + MIR SINE MIR 2 166 -96 468 208 0 0 chr6 6774505 6774611 -175640631 + (TA)n Simple_repeat Simple_repeat 1 106 0 726 243 0 38 chr6 6774863 6775048 -175640194 + AluJo SINE Alu 122 299 -13 320 207 76 27 chr6 6775954 6776072 -175639170 + L1ME4a LINE L1 5752 5874 -247 258 32 0 0 chr6 6776099 6776130 -175639112 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 275 25 0 chr6 6776130 6776210 -175639032 + L1ME4a LINE L1 5973 6054 -67 231 229 16 16 chr6 6776559 6776620 -175638622 + GA-rich Low_complexity Low_complexity 4 64 0 2077 104 104 21 chr6 6777118 6777454 -175637788 - THE1B LTR MaLR 0 364 1 1537 179 23 29 chr6 6777525 6777833 -175637409 + AluJo SINE Alu 5 310 -2 242 297 158 0 chr6 6778736 6778837 -175636405 + MIR SINE MIR 35 151 -111 945 193 60 32 chr6 6778840 6779089 -175636153 - MER46C DNA MER2_type 0 338 83 317 232 0 49 chr6 6779208 6779290 -175635952 + MIR SINE MIR 155 232 -30 25 0 0 0 chr6 6780167 6780192 -175635050 + AT_rich Low_complexity Low_complexity 1 25 0 374 264 116 8 chr6 6780457 6780578 -175634664 + L2 LINE L2 3180 3313 0 3498 116 43 10 chr6 6780967 6781475 -175633767 - MER1A DNA MER1_type 0 527 3 247 67 67 0 chr6 6781940 6781985 -175633257 + CT-rich Low_complexity Low_complexity 4 51 0 2312 115 0 0 chr6 6782245 6782540 -175632702 + AluSx SINE Alu 5 299 -13 790 185 25 0 chr6 6783088 6783250 -175631992 + MER5A DNA MER1_type 1 166 -23 355 250 72 33 chr6 6783129 6783281 -175631961 - MER5A DNA MER1_type -31 158 1 * 1991 156 23 25 chr6 6783442 6783795 -175631447 + MLT1A1 LTR MaLR 13 364 -1 843 181 32 27 chr6 6784207 6784395 -175630847 - MER5A DNA MER1_type 0 189 1 1622 138 98 41 chr6 6786430 6786709 -175628533 - MLT1B LTR MaLR 0 390 89 2250 116 13 0 chr6 6786709 6787012 -175628230 + AluSp SINE Alu 1 307 -6 1622 138 98 41 chr6 6787012 6787049 -175628193 - MLT1B LTR MaLR -301 89 56 583 175 0 10 chr6 6787049 6787146 -175628096 - Tigger7 DNA MER2_type -2 2489 2394 1167 218 75 0 chr6 6787147 6787386 -175627856 - Tigger7 DNA MER2_type -2222 265 9 362 143 18 0 chr6 6787393 6787449 -175627793 - MLT1B LTR MaLR -330 60 4 346 178 11 67 chr6 6788458 6788548 -175626694 - MIR SINE MIR -112 150 66 1520 216 49 6 chr6 6789415 6789762 -175625480 + MLT1A1 LTR MaLR 1 362 -3 1816 186 132 13 chr6 6789906 6790353 -175624889 - MLT1D LTR MaLR 0 505 6 212 204 161 21 chr6 6790358 6790451 -175624791 + MIR SINE MIR 140 245 -17 1346 199 69 22 chr6 6791108 6791425 -175623817 + MER58B DNA MER1_type 10 341 0 235 298 161 0 chr6 6791658 6791782 -175623460 - MIR SINE MIR -70 192 49 293 291 0 25 chr6 6791956 6792035 -175623207 + G-rich Low_complexity Low_complexity 1 77 0 636 192 21 21 chr6 6792039 6792351 -175622891 + GA-rich Low_complexity Low_complexity 1 312 0 181 313 35 56 chr6 6796565 6796709 -175618533 - MIR3 SINE MIR -3 205 65 2166 123 3 3 chr6 6797179 6797489 -175617753 + AluSx SINE Alu 3 312 0 2461 73 7 0 chr6 6798310 6798613 -175616629 + AluY SINE Alu 1 305 -6 736 284 46 17 chr6 6798646 6798885 -175616357 - Charlie8 DNA MER1_type -2171 246 1 1395 258 86 5 chr6 6799379 6799763 -175615479 - LTR16C LTR ERVL -6 485 71 1865 223 6 0 chr6 6799784 6800147 -175615095 - MLT1A1 LTR MaLR 0 365 1 1120 274 94 105 chr6 6800311 6800502 -175614740 + L1MEd LINE L1 42 234 -5885 207 0 0 0 chr6 6800502 6800525 -175614717 + (CA)n Simple_repeat Simple_repeat 2 24 0 1120 274 94 105 chr6 6800525 6801550 -175613692 + L1MEd LINE L1 234 1245 -4874 817 247 63 103 chr6 6802068 6802525 -175612717 - MLT1F LTR MaLR 0 542 104 3793 143 67 45 chr6 6802526 6803842 -175611400 - pTR5 LTR ERV1 0 2438 760 359 222 145 0 chr6 6803842 6803959 -175611283 - MLT1F LTR MaLR -453 140 7 733 180 0 0 chr6 6804071 6804210 -175611032 + L1MB2 LINE L1 6033 6171 0 21 0 0 0 chr6 6804457 6804478 -175610764 + AT_rich Low_complexity Low_complexity 1 21 0 2274 111 16 0 chr6 6804487 6804794 -175610448 + AluSx SINE Alu 1 312 0 721 247 75 45 chr6 6804912 6805179 -175610063 + L1M4 LINE L1 4015 4289 -1857 356 269 61 19 chr6 6805221 6805382 -175609860 - L1MB5 LINE L1 -332 5842 5677 186 238 109 59 chr6 6806656 6806757 -175608485 + MER5C DNA MER1_type 90 195 -129 794 134 34 0 chr6 6806836 6806955 -175608287 - FLAM_C SINE Alu -19 124 2 644 277 107 12 chr6 6806964 6807217 -175608025 + L1MD2 LINE L1 6083 6359 0 441 291 68 0 chr6 6808222 6808370 -175606872 + MIR SINE MIR 105 262 0 239 278 33 33 chr6 6808578 6808668 -175606574 + L2 LINE L2 3203 3292 -21 8872 137 68 41 chr6 6809022 6810674 -175604568 - pTR5 LTR ERV1 0 2438 741 595 207 79 12 chr6 6812017 6812181 -175603061 + MER5B DNA MER1_type 1 175 -3 2101 113 7 0 chr6 6812309 6812609 -175602633 + AluSx SINE Alu 1 302 -10 695 196 0 23 chr6 6812617 6812750 -175602492 + FLAM_C SINE Alu 4 133 0 221 313 12 12 chr6 6812906 6812989 -175602253 - MIR SINE MIR -12 250 168 210 316 38 0 chr6 6814119 6814198 -175601044 + L2 LINE L2 3231 3312 -1 198 24 24 49 chr6 6814683 6814724 -175600518 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2142 95 0 0 chr6 6814726 6815010 -175600232 - AluSx SINE Alu -28 284 1 233 71 0 0 chr6 6816249 6816277 -175598965 + MLT2C2 LTR ERVL 430 457 -7 315 209 27 0 chr6 6816683 6816793 -175598449 + GA-rich Low_complexity Low_complexity 2 114 0 854 227 39 0 chr6 6817013 6817216 -175598026 + L1MD2 LINE L1 6139 6349 -10 1069 184 23 14 chr6 6818368 6818585 -175596657 + MER20 DNA MER1_type 1 219 0 387 297 31 8 chr6 6819813 6819941 -175595301 + MIR SINE MIR 48 178 -84 511 250 275 18 chr6 6819952 6820232 -175595010 - LTR50 LTR ERVL -7 788 437 329 184 289 13 chr6 6820315 6820467 -175594775 - LTR50 LTR ERVL -581 214 21 235 231 62 31 chr6 6820484 6820549 -175594693 - L2 LINE L2 0 3272 3206 441 81 0 0 chr6 6821244 6821306 -175593936 + (GGATG)n Simple_repeat Simple_repeat 2 63 0 186 391 0 0 chr6 6822558 6822627 -175592615 + L2 LINE L2 3188 3256 -16 279 272 133 89 chr6 6823353 6823533 -175591709 + MIR SINE MIR 32 219 -43 268 356 60 20 chr6 6824382 6824531 -175590711 + L2 LINE L2 3096 3250 -22 771 243 65 9 chr6 6824549 6824763 -175590479 - MIR SINE MIR -3 259 34 513 160 0 25 chr6 6825104 6825223 -175590019 + CT-rich Low_complexity Low_complexity 3 118 0 267 122 0 0 chr6 6825394 6825443 -175589799 + (TC)n Simple_repeat Simple_repeat 2 50 0 259 297 59 25 chr6 6825560 6825678 -175589564 + L2 LINE L2 3180 3301 -12 468 293 79 11 chr6 6826689 6826955 -175588287 + L1ME4a LINE L1 5732 6015 -106 440 215 8 108 chr6 6827585 6827621 -175587621 + MER5B DNA MER1_type 1 39 -139 1030 191 14 101 chr6 6827621 6827976 -175587266 + MER33 DNA MER1_type 1 324 0 440 215 8 108 chr6 6827976 6828069 -175587173 + MER5B DNA MER1_type 39 117 -61 317 215 177 13 chr6 6828135 6828214 -175587028 - MIR SINE MIR -115 147 56 1023 143 7 7 chr6 6828390 6828544 -175586698 + MER5A DNA MER1_type 1 154 -35 667 187 112 8 chr6 6828550 6828684 -175586558 - MER58B DNA MER1_type -5 336 189 398 151 0 0 chr6 6828749 6828822 -175586420 - MER58B DNA MER1_type -161 180 108 185 262 0 0 chr6 6828833 6828875 -175586367 + MER5A DNA MER1_type 148 189 0 212 259 68 91 chr6 6829084 6829308 -175585934 + MIR3 SINE MIR 1 216 -46 347 156 0 56 chr6 6830256 6830346 -175584896 - L1PA3 LINE L1 -1 6154 6070 834 148 55 39 chr6 6830365 6830547 -175584695 - L1PA11 LINE L1 -80 6094 5910 1386 168 24 108 chr6 6832052 6832422 -175582820 - MER44D DNA MER2_type 0 609 1 889 210 11 0 chr6 6832863 6833049 -175582193 - MER5A DNA MER1_type 0 189 2 916 279 30 4 chr6 6833049 6833286 -175581956 + MIR SINE MIR 8 250 -12 2346 65 3 7 chr6 6833874 6834180 -175581062 - AluY SINE Alu -6 305 1 1386 191 48 22 chr6 6834975 6835289 -175579953 + MER33 DNA MER1_type 3 324 0 955 223 30 0 chr6 6835298 6835495 -175579747 - MER3 DNA MER1_type -1 208 6 2136 36 0 0 chr6 6835527 6835775 -175579467 - L1PA3 LINE L1 0 6155 5908 2298 15 0 11 chr6 6835775 6836041 -175579201 + L1PA3 LINE L1 5622 5884 -271 1889 218 130 2 chr6 6836263 6836695 -175578547 - MLT1D LTR MaLR 0 505 19 864 154 0 0 chr6 6837145 6837288 -175577954 + FLAM_C SINE Alu 1 143 0 1463 176 29 13 chr6 6837307 6837614 -175577628 + AluJo SINE Alu 1 312 0 304 269 0 0 chr6 6838563 6838630 -175576612 - MER91A DNA MER1_type -1 195 129 216 319 21 21 chr6 6839042 6839136 -175576106 - MER91A DNA MER1_type -67 129 36 1143 87 0 25 chr6 6839935 6840096 -175575146 - L1MA9 LINE L1 -623 5689 5533 2247 159 80 9 chr6 6840107 6840534 -175574708 + L1MA9 LINE L1 5705 6161 -151 300 273 0 0 chr6 6840534 6840655 -175574587 + (CA)n Simple_repeat Simple_repeat 1 121 0 352 113 0 42 chr6 6840682 6840753 -175574489 + L1MA9 LINE L1 6245 6312 0 1528 145 67 28 chr6 6841111 6841393 -175573849 + AluJb SINE Alu 1 293 -19 187 107 0 0 chr6 6841700 6841728 -175573514 - L3b LINE CR1 -12 1571 1544 490 308 79 23 chr6 6842181 6842395 -175572847 - MIR SINE MIR -2 260 35 319 273 33 8 chr6 6842638 6842759 -175572483 - LTR67 LTR ERVL -1 556 433 212 309 53 11 chr6 6842928 6843022 -175572220 - MER91C DNA MER1_type -30 110 13 417 267 99 0 chr6 6843090 6843191 -175572051 - MIR SINE MIR -144 118 8 3324 313 125 21 chr6 6843263 6844833 -175570409 + L2 LINE L2 670 2528 -785 420 20 0 0 chr6 6844833 6844882 -175570360 + (CA)n Simple_repeat Simple_repeat 1 49 0 3324 313 125 21 chr6 6844882 6845499 -175569743 + L2 LINE L2 2528 3079 -234 425 257 124 92 chr6 6845512 6845730 -175569512 - MIR SINE MIR -5 257 33 483 291 88 48 chr6 6845735 6845858 -175569384 + L2 LINE L2 3078 3195 -118 2438 146 3 3 chr6 6845858 6846222 -175569020 - THE1B LTR MaLR 0 364 1 483 291 88 48 chr6 6846222 6846325 -175568917 + L2 LINE L2 3195 3313 0 233 197 15 61 chr6 6846589 6846655 -175568587 + GA-rich Low_complexity Low_complexity 1 63 0 2015 96 7 0 chr6 6847210 6847482 -175567760 - AluSg SINE Alu -16 294 21 433 155 0 0 chr6 6847559 6847630 -175567612 - L1MA4A LINE L1 -43 6260 6190 2656 119 19 5 chr6 6847632 6848060 -175567182 - L1MA4A LINE L1 -184 6119 5686 2178 114 0 0 chr6 6848643 6848951 -175566291 + AluSx SINE Alu 1 308 -4 288 254 58 78 chr6 6850069 6850274 -175564968 - L3 LINE CR1 -163 1414 1214 1033 251 165 4 chr6 6850553 6851008 -175564234 + L2 LINE L2 2380 2907 -407 715 280 34 62 chr6 6851040 6851361 -175563881 + L2 LINE L2 2995 3306 -7 180 111 0 0 chr6 6852990 6853017 -175562225 + (GA)n Simple_repeat Simple_repeat 1 27 0 452 280 119 76 chr6 6853826 6854175 -175561067 - MLT1K LTR MaLR -17 571 197 2256 113 17 210 chr6 6854175 6854779 -175560463 + LTR45B LTR ERV1 3 489 0 452 280 119 76 chr6 6854779 6854876 -175560366 - MLT1K LTR MaLR -391 197 106 717 261 99 9 chr6 6854962 6855184 -175560058 + MIR SINE MIR 21 262 0 2301 87 0 13 chr6 6855504 6855813 -175559429 + AluSx SINE Alu 1 305 -7 349 282 100 36 chr6 6856643 6856863 -175558379 - MIR SINE MIR -9 253 20 194 352 45 11 chr6 6857159 6857247 -175557995 - L2 LINE L2 -1 3312 3222 280 272 51 4 chr6 6858833 6858930 -175556312 - MER91A DNA MER1_type -2 188 90 523 218 18 9 chr6 6858960 6859070 -175556172 - MER91A DNA MER1_type -81 115 5 408 265 86 124 chr6 6859453 6859710 -175555532 + L2 LINE L2 3023 3269 -3 1663 189 66 76 chr6 6859744 6860216 -175555026 - MLT1C LTR MaLR 0 467 1 249 338 144 7 chr6 6860238 6860377 -175554865 - MIR SINE MIR -71 191 34 186 276 236 24 chr6 6860394 6860517 -175554725 + MIR SINE MIR 10 158 -104 556 259 37 12 chr6 6861158 6861319 -175553923 + MIR SINE MIR 22 186 -63 644 111 96 15 chr6 6861507 6861642 -175553600 + L1MB3 LINE L1 6034 6179 -4 1961 106 7 0 chr6 6861918 6862227 -175553015 - AluSx SINE Alu 0 311 1 433 60 15 0 chr6 6862243 6862310 -175552932 + L1MB2 LINE L1 6103 6170 -1 322 305 188 8 chr6 6863575 6863703 -175551539 + MIR3 SINE MIR 51 201 -7 299 231 15 0 chr6 6864948 6865013 -175550229 + MER63 DNA MER1_type 685 750 -311 34984 84 7 10 chr6 6865030 6869815 -175545427 + L1P LINE L1 11 4780 -1366 237 277 0 15 chr6 6869817 6869882 -175545360 + L2 LINE L2 3205 3268 -4 1354 175 34 14 chr6 6870338 6870630 -175544612 - MER33 DNA MER1_type -24 300 3 523 290 45 57 chr6 6870665 6870899 -175544343 - MIR SINE MIR 0 262 37 2232 54 7 10 chr6 6871009 6871303 -175543939 + AluY SINE Alu 1 293 -18 270 0 0 0 chr6 6871345 6871375 -175543867 + (TG)n Simple_repeat Simple_repeat 2 31 0 1963 120 0 0 chr6 6871375 6871658 -175543584 - AluSx SINE Alu -29 283 1 971 256 127 9 chr6 6872201 6872517 -175542725 - MLT1J LTR MaLR -4 507 155 304 231 33 165 chr6 6872530 6872621 -175542621 - MLT1E LTR MaLR -244 410 250 314 203 17 0 chr6 6872692 6872751 -175542491 + LTR16B LTR ERVL 1 60 -404 635 152 7 80 chr6 6872753 6872891 -175542351 + FRAM SINE Alu 27 154 -22 2067 117 0 0 chr6 6872909 6873207 -175542035 + AluSc SINE Alu 2 299 -10 2269 81 3 0 chr6 6874449 6874745 -175540497 - AluSp SINE Alu -16 297 1 428 291 126 0 chr6 6875179 6875330 -175539912 + MIR SINE MIR 92 261 -1 246 156 0 0 chr6 6875426 6875471 -175539771 + (CA)n Simple_repeat Simple_repeat 2 46 0 301 302 51 51 chr6 6876301 6876516 -175538726 - L2 LINE L2 -373 2941 2727 25 31 0 0 chr6 6877183 6877215 -175538027 + AT_rich Low_complexity Low_complexity 1 32 0 1278 232 38 55 chr6 6877685 6878137 -175537105 - HsTC2 DNA Tc2 0 1900 1281 516 340 21 5 chr6 6878548 6878736 -175536506 + MIR SINE MIR 20 210 -52 196 330 70 9 chr6 6879383 6879498 -175535744 + MIR SINE MIR 69 190 -72 2502 56 0 0 chr6 6879670 6879973 -175535269 + AluSq SINE Alu 1 303 -10 527 211 24 0 chr6 6879989 6880155 -175535087 + CT-rich Low_complexity Low_complexity 1 170 0 272 200 0 0 chr6 6880885 6880935 -175534307 - MER103 DNA DNA -53 113 64 4375 206 109 8 chr6 6881240 6882219 -175533023 + Tigger6a DNA MER2_type 1 1078 -5 2231 163 10 3 chr6 6883114 6883501 -175531741 - MLT1B LTR MaLR 0 390 1 251 348 54 49 chr6 6883578 6883762 -175531480 + L2 LINE L2 2175 2359 -955 3994 138 19 32 chr6 6884539 6885263 -175529979 - L1PA16 LINE L1 -17 6149 5435 189 0 0 0 chr6 6885414 6885435 -175529807 + (CA)n Simple_repeat Simple_repeat 2 22 0 323 282 12 0 chr6 6886103 6886188 -175529054 + (TG)n Simple_repeat Simple_repeat 1 86 0 724 133 106 72 chr6 6886926 6887106 -175528136 - MLT1C LTR MaLR -279 188 3 4002 322 40 26 chr6 6887110 6888560 -175526682 + HERV16 LTR ERVL 1854 3323 -1673 2167 124 0 0 chr6 6890224 6890531 -175524711 + AluSg SINE Alu 1 307 -3 4422 136 58 22 chr6 6891345 6892101 -175523141 - LTR1 LTR ERV1 -2 783 1 304 265 20 61 chr6 6892555 6892653 -175522589 - MER5A DNA MER1_type -56 133 40 283 274 0 0 chr6 6893818 6893891 -175521351 + MER116 DNA Mariner 8 80 0 448 200 89 0 chr6 6894095 6894185 -175521057 + MER5A DNA MER1_type 9 106 -83 389 185 43 0 chr6 6894426 6894518 -175520724 - MLT1F LTR MaLR 0 542 447 * 637 230 0 15 chr6 6894489 6894624 -175520618 - MLT1E LTR MaLR -460 133 1 568 250 59 13 chr6 6894767 6894919 -175520323 + MER5B DNA MER1_type 17 175 -3 2112 98 13 10 chr6 6894927 6895232 -175520010 + AluSx SINE Alu 1 306 -6 211 170 0 43 chr6 6895500 6895547 -175519695 + GA-rich Low_complexity Low_complexity 4 48 0 2403 161 22 18 chr6 6895555 6895995 -175519247 + L1MC1 LINE L1 5882 6324 -4 1603 170 25 3 chr6 6895995 6896278 -175518964 - AluJb SINE Alu -22 290 2 23 0 0 0 chr6 6896283 6896306 -175518936 + AT_rich Low_complexity Low_complexity 1 23 0 388 296 170 6 chr6 6896428 6896587 -175518655 - MIR3 SINE MIR -6 202 18 821 144 24 0 chr6 6898303 6898428 -175516814 + FLAM_C SINE Alu 1 128 -15 2733 7 0 7 chr6 6899299 6899609 -175515633 + AluY SINE Alu 1 308 -3 251 205 33 131 chr6 6900019 6900141 -175515101 + MIR3 SINE MIR 51 160 -48 215 280 0 0 chr6 6900362 6900412 -175514830 + MIR3 SINE MIR 153 202 -6 2015 132 7 13 chr6 6900896 6901206 -175514036 + AluSx SINE Alu 1 308 -4 443 311 86 5 chr6 6902011 6902233 -175513009 - MLT1L LTR MaLR -1 614 375 2295 218 51 19 chr6 6902266 6902772 -175512470 + MER45B DNA AcHobo 1 526 -514 2084 116 13 3 chr6 6902772 6903082 -175512160 + AluSq SINE Alu 1 313 0 2295 218 51 19 chr6 6903082 6903102 -175512140 + MER45B DNA AcHobo 526 544 -496 794 209 0 7 chr6 6903688 6903841 -175511401 + FRAM SINE Alu 17 168 -8 24 32 0 0 chr6 6903841 6903872 -175511370 + AT_rich Low_complexity Low_complexity 1 31 0 235 273 68 11 chr6 6904353 6904441 -175510801 - MIR SINE MIR -97 111 19 1101 186 14 18 chr6 6904668 6904888 -175510354 - MER20 DNA MER1_type 0 219 1 366 244 33 0 chr6 6905032 6905122 -175510120 - MER89-int LTR ERV1 -4163 2638 2546 1985 107 0 69 chr6 6905166 6905485 -175509757 + AluSx SINE Alu 1 297 -15 1191 251 72 55 chr6 6907917 6908302 -175506940 - MER92C LTR ERV1 -2 552 154 1954 159 59 14 chr6 6908302 6908673 -175506569 - MLT1B LTR MaLR -2 388 1 1191 251 72 55 chr6 6908673 6908830 -175506412 - MER92C LTR ERV1 -400 154 1 1138 159 68 19 chr6 6910776 6910983 -175504259 + AluJo SINE Alu 85 301 -11 225 0 0 0 chr6 6911835 6911860 -175503382 + (A)n Simple_repeat Simple_repeat 1 25 0 1109 136 16 0 chr6 6912632 6912816 -175502426 + L1MA4 LINE L1 6107 6293 -7 2824 10 0 19 chr6 6912835 6913133 -175502109 + AluYa5 SINE Alu 1 294 -17 207 0 0 0 chr6 6913133 6913156 -175502086 + (TA)n Simple_repeat Simple_repeat 1 23 0 2824 10 0 19 chr6 6913156 6913170 -175502072 + AluYa5 SINE Alu 294 307 -4 2167 122 3 10 chr6 6913427 6913739 -175501503 + AluSx SINE Alu 2 311 -1 795 185 143 21 chr6 6914238 6914427 -175500815 - MER20 DNA MER1_type 0 219 8 668 203 78 78 chr6 6914441 6914762 -175500480 + MER33 DNA MER1_type 1 321 -3 2118 105 10 3 chr6 6915342 6915636 -175499606 - AluSq SINE Alu -13 300 5 207 0 0 0 chr6 6916064 6916087 -175499155 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 352 333 36 18 chr6 6916267 6916432 -175498810 - MIR3 SINE MIR -5 203 36 429 301 31 50 chr6 6917385 6917480 -175497762 + L1ME3A LINE L1 5852 5947 -223 3121 186 20 8 chr6 6917480 6918086 -175497156 + L1MB3 LINE L1 5565 6177 -6 429 301 31 50 chr6 6918086 6918309 -175496933 + L1ME3A LINE L1 5947 6164 -6 223 291 139 12 chr6 6919164 6919250 -175495992 - MIR3 SINE MIR -48 160 64 1824 174 16 10 chr6 6919250 6919560 -175495682 + AluJo SINE Alu 1 312 0 190 313 78 0 chr6 6919759 6919823 -175495419 - MIR3 SINE MIR -8 200 132 333 275 80 22 chr6 6923635 6923773 -175491469 + MIR SINE MIR 117 262 0 285 298 256 21 chr6 6923807 6924066 -175491176 - L3 LINE CR1 -41 1536 1339 2050 138 0 7 chr6 6924066 6924362 -175490880 - AluY SINE Alu -17 294 1 2289 116 0 3 chr6 6924362 6924663 -175490579 - AluSx SINE Alu -12 300 1 285 298 256 21 chr6 6924663 6924691 -175490551 - L3 LINE CR1 -237 1340 1180 581 296 108 35 chr6 6924762 6925133 -175490109 - L3 LINE CR1 -567 1010 613 317 318 139 9 chr6 6926208 6926431 -175488811 + MER112 DNA MER1_type 1 252 -8 377 278 56 0 chr6 6926449 6926575 -175488667 + HAL1 LINE L1 11 143 -2364 403 295 23 8 chr6 6927014 6927143 -175488099 + MLT1L LTR MaLR 449 579 -36 791 289 64 13 chr6 6927151 6927528 -175487714 + HAL1 LINE L1 1379 1774 -733 2343 232 40 2 chr6 6927681 6928212 -175487030 - MLT1F1 LTR MaLR -16 551 1 452 276 49 31 chr6 6928216 6928379 -175486863 + HAL1 LINE L1 2007 2172 -335 1787 129 43 0 chr6 6928388 6928644 -175486598 + AluSx SINE Alu 1 267 -45 5038 158 84 20 chr6 6928739 6930256 -175484986 + L1MC1 LINE L1 4720 6333 0 730 299 211 19 chr6 6932948 6933379 -175481863 + L2 LINE L2 2205 2718 -596 564 212 58 0 chr6 6935030 6935167 -175480075 - MIR SINE MIR -14 248 104 309 302 132 21 chr6 6935378 6935567 -175479675 + L2 LINE L2 2210 2419 -895 1403 272 71 29 chr6 6935712 6936230 -175479012 + MLT1F1 LTR MaLR 9 548 -19 360 348 105 0 chr6 6936241 6936422 -175478820 + L2 LINE L2 2649 2848 -466 2158 124 7 0 chr6 6937279 6937569 -175477673 - AluSx SINE Alu -20 292 1 297 246 55 27 chr6 6937725 6937835 -175477407 + L2 LINE L2 2967 3079 -234 217 227 27 13 chr6 6938483 6938558 -175476684 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 227 164 16 49 chr6 6938614 6938675 -175476567 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 423 188 134 27 chr6 6938755 6938867 -175476375 + MER63 DNA MER1_type 1 750 -312 275 267 0 13 chr6 6938853 6938928 -175476314 + MER63 DNA MER1_type 985 1058 -4 * 216 128 0 0 chr6 6939000 6939012 -175476230 + (A)n Simple_repeat Simple_repeat 1 12 -27 1851 159 6 49 chr6 6939012 6939339 -175475903 + AluSq SINE Alu 1 313 0 216 128 0 0 chr6 6939339 6939365 -175475877 + (A)n Simple_repeat Simple_repeat 11 39 0 184 356 27 0 chr6 6940224 6940297 -175474945 - L2 LINE L2 -31 3282 3208 348 242 134 13 chr6 6940651 6940800 -175474442 - MER104 DNA Tc2 -13 167 1 3963 158 154 30 chr6 6941821 6943103 -175472139 - pTR5 LTR ERV1 -8 2430 738 261 218 0 0 chr6 6943842 6943920 -175471322 + (CA)n Simple_repeat Simple_repeat 1 78 0 554 202 6 0 chr6 6943935 6944113 -175471129 + (CA)n Simple_repeat Simple_repeat 2 180 0 182 190 0 17 chr6 6944144 6944202 -175471040 + (CA)n Simple_repeat Simple_repeat 2 58 0 183 174 65 65 chr6 6944273 6944319 -175470923 + L2 LINE L2 3219 3264 -8 249 224 0 30 chr6 6944677 6944744 -175470498 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 239 210 16 0 chr6 6944745 6944807 -175470435 - L1MC4 LINE L1 -1340 6702 6640 342 0 0 0 chr6 6945353 6945391 -175469851 + (CA)n Simple_repeat Simple_repeat 2 39 0 213 65 0 0 chr6 6947363 6947394 -175467848 + (TA)n Simple_repeat Simple_repeat 2 32 0 210 71 0 0 chr6 6948562 6948590 -175466652 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 395 137 14 0 chr6 6949400 6949473 -175465769 + GA-rich Low_complexity Low_complexity 3 76 0 264 250 10 87 chr6 6949888 6949945 -175465297 + MER21B LTR ERV1 12 59 -804 228 35 0 0 chr6 6949945 6949974 -175465268 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 264 250 10 87 chr6 6949974 6950020 -175465222 + MER21B LTR ERV1 59 107 -756 2483 236 111 26 chr6 6950020 6950786 -175464456 + MER21B LTR ERV1 22 852 -11 837 177 58 22 chr6 6950909 6951135 -175464107 + MER33 DNA MER1_type 9 242 -82 2475 138 52 54 chr6 6951151 6951170 -175464072 - L1MB3 LINE L1 -17 6166 6148 2262 106 0 0 chr6 6951170 6951463 -175463779 - AluSg SINE Alu -17 293 1 2475 138 52 54 chr6 6951463 6951924 -175463318 - L1MB3 LINE L1 -35 6148 5617 2322 110 3 0 chr6 6951924 6952233 -175463009 - AluSg SINE Alu 0 310 1 2475 138 52 54 chr6 6952233 6952504 -175462738 - L1MB3 LINE L1 -566 5617 5347 549 106 0 43 chr6 6952505 6952599 -175462643 + MER33 DNA MER1_type 273 362 -1 2266 110 3 3 chr6 6953021 6953321 -175461921 + AluSq SINE Alu 1 300 -13 2226 119 10 3 chr6 6953770 6954081 -175461161 - AluSq SINE Alu 0 313 1 2342 105 0 3 chr6 6954352 6954665 -175460577 + AluSx SINE Alu 1 312 0 214 300 27 55 chr6 6954827 6954937 -175460305 + MIR SINE MIR 98 204 -58 1761 163 7 14 chr6 6955202 6955497 -175459745 + AluJo SINE Alu 1 293 -19 303 207 97 10 chr6 6956823 6956930 -175458312 + MER53 DNA DNA 10 123 -66 4672 158 144 31 chr6 6958507 6959914 -175455328 - pTR5 LTR ERV1 0 2438 742 316 273 120 13 chr6 6960175 6960325 -175454917 - L2 LINE L2 -328 2985 2820 2149 273 103 50 chr6 6960335 6960624 -175454618 - L2 LINE L2 -650 2664 2392 2042 63 0 0 chr6 6960624 6960876 -175454366 - L1PA6 LINE L1 -4 6150 5899 2149 273 103 50 chr6 6960876 6961149 -175454093 - L2 LINE L2 -922 2392 2135 1272 230 26 10 chr6 6961149 6961453 -175453789 + AluJb SINE Alu 4 312 0 2149 273 103 50 chr6 6961453 6961612 -175453630 - L2 LINE L2 -1179 2135 1986 2066 140 110 8 chr6 6961612 6962004 -175453238 + MSTB1 LTR MaLR 1 432 0 2149 273 103 50 chr6 6962004 6962481 -175452761 - L2 LINE L2 -1328 1986 1400 1401 155 83 31 chr6 6962497 6962787 -175452455 + MSTB LTR MaLR 1 305 -121 250 91 0 0 chr6 6962796 6962829 -175452413 - MER58 DNA MER1_type -2216 204 172 662 78 12 18 chr6 6962830 6963085 -175452157 + AluSg SINE Alu 1 306 -4 717 204 117 0 chr6 6963085 6963247 -175451995 - MER58 DNA MER1_type -160 181 1 31 20 0 20 chr6 6964018 6964047 -175451195 + AT_rich Low_complexity Low_complexity 1 30 -18 1915 103 13 43 chr6 6964047 6964347 -175450895 - AluSx SINE Alu -21 291 1 31 20 0 20 chr6 6964347 6964366 -175450876 + AT_rich Low_complexity Low_complexity 30 48 0 537 168 9 62 chr6 6964444 6964557 -175450685 - MSTA LTR MaLR -321 107 1 2067 109 3 7 chr6 6964661 6964963 -175450279 - AluSx SINE Alu -11 301 1 509 279 90 31 chr6 6965113 6965335 -175449907 + MIR SINE MIR 20 254 -8 240 214 0 0 chr6 6965410 6965452 -175449790 + L2 LINE L2 3258 3299 -14 2073 97 30 3 chr6 6965764 6966062 -175449180 + AluSc SINE Alu 1 306 -3 189 0 0 0 chr6 6966815 6966836 -175448406 + (TG)n Simple_repeat Simple_repeat 2 22 0 2832 168 10 27 chr6 6967153 6967700 -175447542 + L1MB3 LINE L1 5633 6160 -15 2122 117 0 0 chr6 6967816 6968116 -175447126 + AluSx SINE Alu 1 300 -12 870 164 0 16 chr6 6968133 6968316 -175446926 + GA-rich Low_complexity Low_complexity 1 180 0 270 136 0 0 chr6 6968316 6968360 -175446882 + (GGA)n Simple_repeat Simple_repeat 3 46 0 584 266 104 57 chr6 6969706 6970109 -175445133 - LTR16A LTR ERVL -7 443 22 358 218 89 65 chr6 6970247 6970348 -175444894 + L2 LINE L2 3186 3292 -21 2263 73 0 13 chr6 6970348 6970648 -175444594 - AluY SINE Alu -15 296 1 358 218 89 65 chr6 6970648 6970670 -175444572 + L2 LINE L2 3292 3312 -1 204 315 79 47 chr6 6970845 6970972 -175444270 + MIR3 SINE MIR 73 203 -5 2175 81 3 0 chr6 6971288 6971593 -175443649 + AluSp SINE Alu 1 306 0 194 314 0 0 chr6 6971608 6971659 -175443583 + L2 LINE L2 3213 3263 -9 362 301 90 8 chr6 6971992 6972125 -175443117 - MIR SINE MIR -118 144 1 619 219 89 89 chr6 6972255 6972570 -175442672 - MER102a DNA MER1_type -15 315 1 692 224 5 57 chr6 6972731 6972941 -175442301 - HAL1 LINE L1 -119 2388 2190 1893 204 9 61 chr6 6972984 6973444 -175441798 - MER41B LTR ERV1 -38 597 162 1739 258 108 14 chr6 6973505 6974145 -175441097 - HAL1 LINE L1 -304 2203 1504 7554 26 1 1 chr6 6974152 6975438 -175439804 + L1PA4 LINE L1 4882 6167 0 681 129 9 35 chr6 6975991 6976107 -175439135 + AluSq/x SINE Alu 23 135 -178 225 229 17 68 chr6 6976110 6976228 -175439014 - L1MC5 LINE L1 -247 7714 7603 380 279 27 20 chr6 6976450 6976597 -175438645 - L1MC5 LINE L1 -522 7439 7292 * 459 330 58 10 chr6 6976565 6976859 -175438383 - L1MC4a LINE L1 -393 7415 7108 379 83 0 0 chr6 6977560 6977620 -175437622 - L1PA8 LINE L1 -2 6170 6111 1963 108 0 0 chr6 6977701 6977969 -175437273 - AluSx SINE Alu -44 268 1 27 0 0 0 chr6 6978635 6978662 -175436580 + AT_rich Low_complexity Low_complexity 1 27 0 585 67 13 0 chr6 6979277 6979352 -175435890 + AluSq/x SINE Alu 64 139 -174 1676 100 4 0 chr6 6979352 6979582 -175435660 + AluSp SINE Alu 68 298 -15 497 292 152 0 chr6 6979686 6979857 -175435385 + MIR SINE MIR 29 225 -37 23 54 0 0 chr6 6980016 6980053 -175435189 + AT_rich Low_complexity Low_complexity 1 37 0 207 111 0 28 chr6 6980134 6980170 -175435072 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 185 35 69 0 chr6 6981242 6981271 -175433971 + T-rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr6 6981291 6981314 -175433928 + (TA)n Simple_repeat Simple_repeat 1 23 0 551 235 190 6 chr6 6981315 6981494 -175433748 + MER112 DNA MER1_type 49 260 0 1894 131 36 162 chr6 6981618 6981675 -175433567 - MER31B LTR ERV1 -7 459 396 764 168 0 15 chr6 6981675 6981806 -175433436 + FLAM_C SINE Alu 2 130 -3 1894 131 36 162 chr6 6981806 6982273 -175432969 - MER31B LTR ERV1 -70 396 1 2004 271 99 74 chr6 6982448 6982483 -175432759 + HAL1 LINE L1 116 149 -2358 261 0 0 0 chr6 6982483 6982512 -175432730 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2004 271 99 74 chr6 6982512 6984158 -175431084 + HAL1 LINE L1 149 1839 -668 2438 66 3 0 chr6 6984300 6984603 -175430639 - AluSp SINE Alu -9 304 1 454 235 63 75 chr6 6985088 6985356 -175429886 + HAL1 LINE L1 1974 2238 -269 819 251 215 36 chr6 6985377 6985763 -175429479 - LTR33 LTR ERVL -64 457 3 286 240 62 54 chr6 6985868 6985997 -175429245 + HAL1 LINE L1 2375 2504 -3 238 25 25 25 chr6 6986023 6986063 -175429179 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 387 286 182 0 chr6 6986113 6986267 -175428975 + MIR SINE MIR 37 218 -44 263 282 24 47 chr6 6986366 6986451 -175428791 + L2 LINE L2 3184 3266 -6 273 321 0 0 chr6 6987382 6987463 -175427779 + MLT1L LTR MaLR 412 492 -123 24 32 0 0 chr6 6987650 6987681 -175427561 + AT_rich Low_complexity Low_complexity 1 31 0 811 165 0 0 chr6 6987681 6987802 -175427440 - FLAM_A SINE Alu -12 121 1 347 328 16 8 chr6 6988370 6988498 -175426744 - MER5A DNA MER1_type -5 184 56 312 233 42 42 chr6 6988394 6988514 -175426728 + MER5A DNA MER1_type 41 160 -29 * 1747 158 0 10 chr6 6988601 6988898 -175426344 - AluJb SINE Alu -1 311 18 183 271 14 43 chr6 6991149 6991204 -175424038 + L2 LINE L2 3165 3220 -93 2034 116 0 0 chr6 6991204 6991511 -175423731 - AluSq SINE Alu 0 307 1 183 271 14 43 chr6 6991511 6991524 -175423718 + L2 LINE L2 3220 3232 -81 270 226 200 43 chr6 6992374 6992489 -175422753 + MIR SINE MIR 124 256 -6 254 318 79 16 chr6 6992590 6992716 -175422526 - MARNA DNA Mariner -380 206 73 2133 69 0 34 chr6 6993004 6993329 -175421913 + AluY SINE Alu 3 317 0 2047 137 0 0 chr6 6993496 6993803 -175421439 - AluSx SINE Alu -5 307 1 587 308 67 5 chr6 6993805 6994013 -175421229 - MIR SINE MIR -36 226 6 2422 149 38 33 chr6 6994174 6994598 -175420644 + MSTB LTR MaLR 1 426 0 2320 143 30 40 chr6 6995908 6996240 -175419002 - MSTC LTR MaLR -1 427 98 2438 63 0 0 chr6 6996240 6996542 -175418700 - AluY SINE Alu -9 302 1 2320 143 30 40 chr6 6996542 6996637 -175418605 - MSTC LTR MaLR -330 98 4 292 341 82 12 chr6 6997004 6997174 -175418068 + L2 LINE L2 2935 3116 -197 356 246 6 0 chr6 6997282 6997457 -175417785 + CT-rich Low_complexity Low_complexity 2 177 0 405 0 0 0 chr6 6997459 6997504 -175417738 + (CA)n Simple_repeat Simple_repeat 1 45 0 213 319 56 0 chr6 6997881 6997953 -175417289 - MIR SINE MIR -68 140 65 2210 112 0 0 chr6 6998076 6998379 -175416863 - AluSx SINE Alu -9 303 1 420 255 134 13 chr6 7000227 7000376 -175414866 - MIR SINE MIR -76 186 20 224 203 8 98 chr6 7001368 7001501 -175413741 + CT-rich Low_complexity Low_complexity 1 121 0 356 288 102 0 chr6 7001633 7001751 -175413491 + MLT1J LTR MaLR 67 196 -315 401 185 12 0 chr6 7001773 7001854 -175413388 - FRAM/FAM SINE Alu -93 82 1 449 273 16 23 chr6 7001857 7001985 -175413257 + MLT1J LTR MaLR 184 310 -201 343 286 44 55 chr6 7002679 7002861 -175412381 + LTR16C LTR ERVL 312 491 0 554 243 40 28 chr6 7002861 7003038 -175412204 + MLT1J LTR MaLR 311 489 -22 1898 116 42 0 chr6 7003063 7003348 -175411894 + AluSx SINE Alu 1 297 -15 460 289 159 32 chr6 7003700 7003977 -175411265 + MLT1I LTR MaLR 22 333 -76 1011 141 0 0 chr6 7005540 7005696 -175409546 - FRAM SINE Alu -12 164 9 249 250 31 73 chr6 7005904 7006000 -175409242 + MIR3 SINE MIR 108 199 -9 455 253 77 6 chr6 7006386 7006556 -175408686 + L1MB8 LINE L1 5944 6125 -53 1925 130 0 14 chr6 7006572 7006864 -175408378 - AluSx SINE Alu -24 288 1 679 313 25 10 chr6 7007483 7007684 -175407558 + MIR SINE MIR 51 254 -8 216 97 0 0 chr6 7008557 7008588 -175406654 + (GGA)n Simple_repeat Simple_repeat 2 32 0 610 218 14 49 chr6 7009300 7009442 -175405800 - FLAM_A SINE Alu 0 142 6 284 254 203 17 chr6 7009608 7009726 -175405516 + MIR SINE MIR 106 245 -17 256 284 165 31 chr6 7009723 7009850 -175405392 - MIR3 SINE MIR -35 173 30 * 1935 74 67 7 chr6 7009864 7010202 -175405040 - AluY SINE Alu 0 354 1 1217 55 0 0 chr6 7010202 7010347 -175404895 - AluSq/x SINE Alu -167 145 1 341 88 35 0 chr6 7010914 7010971 -175404271 + CT-rich Low_complexity Low_complexity 1 59 0 319 307 79 18 chr6 7010978 7011092 -175404150 - L2 LINE L2 0 3313 3193 351 177 21 115 chr6 7012171 7012230 -175403012 - MER103 DNA DNA -77 89 41 1520 166 10 40 chr6 7012230 7012531 -175402711 - AluJo SINE Alu -20 292 1 351 177 21 115 chr6 7012531 7012567 -175402675 - MER103 DNA DNA -125 41 3 213 211 0 0 chr6 7012651 7012689 -175402553 + (CA)n Simple_repeat Simple_repeat 2 39 0 1141 248 56 12 chr6 7013164 7013483 -175401759 - MER46C DNA MER2_type 0 338 6 2213 89 0 16 chr6 7013902 7014216 -175401026 - AluY SINE Alu -2 309 1 2065 109 23 0 chr6 7014720 7014923 -175400319 - AluSg SINE Alu 0 329 115 243 0 0 0 chr6 7014923 7014950 -175400292 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2065 109 23 0 chr6 7014950 7015068 -175400174 - AluSg SINE Alu -214 115 1 267 102 61 20 chr6 7015821 7015870 -175399372 + MIR SINE MIR 199 249 -13 2213 89 3 0 chr6 7016036 7016328 -175398914 + AluSp SINE Alu 1 293 -20 1416 213 117 47 chr6 7016353 7016562 -175398680 + L1MD2 LINE L1 5914 6107 -252 180 0 0 0 chr6 7016562 7016582 -175398660 + (CA)n Simple_repeat Simple_repeat 1 20 0 1416 213 117 47 chr6 7016582 7016775 -175398467 + L1MD2 LINE L1 6107 6344 -15 319 310 60 10 chr6 7016938 7017038 -175398204 + MER91C DNA MER1_type 36 140 0 208 135 0 0 chr6 7018154 7018191 -175397051 + (CCCA)n Simple_repeat Simple_repeat 3 39 0 248 197 0 14 chr6 7018439 7018510 -175396732 + GA-rich Low_complexity Low_complexity 5 74 0 572 202 10 0 chr6 7018541 7018645 -175396597 + MIR SINE MIR 53 157 -105 658 168 27 0 chr6 7018652 7018801 -175396441 + (ATGGTG)n Simple_repeat Simple_repeat 3 155 0 977 109 35 0 chr6 7018910 7019084 -175396158 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 296 263 32 11 chr6 7019084 7019179 -175396063 + MIR SINE MIR 149 245 -17 415 224 51 10 chr6 7020016 7020114 -175395128 + MIR SINE MIR 87 188 -74 764 179 0 0 chr6 7020288 7020411 -175394831 + FLAM_C SINE Alu 1 123 -20 364 214 10 10 chr6 7020467 7020570 -175394672 + GA-rich Low_complexity Low_complexity 1 103 0 220 39 0 0 chr6 7020575 7020601 -175394641 + (GA)n Simple_repeat Simple_repeat 2 27 0 356 302 24 48 chr6 7021920 7022046 -175393196 + MIR3 SINE MIR 63 185 -23 200 59 29 0 chr6 7023040 7023074 -175392168 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 211 277 31 0 chr6 7024368 7024433 -175390809 + GA-rich Low_complexity Low_complexity 1 67 0 1776 154 0 0 chr6 7024594 7024874 -175390368 + AluJb SINE Alu 1 280 -32 1941 104 17 0 chr6 7024874 7025161 -175390081 + AluY SINE Alu 17 310 -1 240 111 0 0 chr6 7025161 7025197 -175390045 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1043 153 5 37 chr6 7025197 7025387 -175389855 + L1PA15 LINE L1 5982 6165 0 1821 160 0 10 chr6 7025389 7025696 -175389546 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr6 7025936 7025964 -175389278 + AT_rich Low_complexity Low_complexity 1 28 0 1486 218 113 109 chr6 7026072 7026168 -175389074 - Charlie7 DNA MER1_type -147 2465 2371 2331 68 3 0 chr6 7026168 7026461 -175388781 + AluY SINE Alu 1 294 -17 1486 218 113 109 chr6 7026461 7027342 -175387900 - Charlie7 DNA MER1_type -241 2371 1485 242 246 0 0 chr6 7027366 7027423 -175387819 + L1MC4 LINE L1 6649 6705 -1337 302 287 96 44 chr6 7027501 7027637 -175387605 - Charlie7 DNA MER1_type -2328 284 142 1844 170 0 0 chr6 7027648 7027960 -175387282 + AluJb SINE Alu 1 312 0 577 320 13 53 chr6 7028102 7028273 -175386969 + MIR SINE MIR 46 207 -55 2075 104 0 10 chr6 7028273 7028571 -175386671 - AluSg SINE Alu -15 295 1 577 320 13 53 chr6 7028571 7028624 -175386618 + MIR SINE MIR 207 261 -1 399 367 67 11 chr6 7028670 7028940 -175386302 - L2 LINE L2 -665 2649 2365 817 236 132 0 chr6 7028940 7029152 -175386090 - MIR SINE MIR -10 252 13 2201 98 3 0 chr6 7030318 7030615 -175384627 + AluSx SINE Alu 1 298 -14 293 184 35 14 chr6 7031591 7031732 -175383510 + CT-rich Low_complexity Low_complexity 1 144 0 901 311 86 6 chr6 7031933 7032271 -175382971 - LTR16C LTR ERVL -2 489 125 274 156 31 0 chr6 7032349 7032413 -175382829 + (TA)n Simple_repeat Simple_repeat 1 66 0 305 218 24 48 chr6 7032709 7032833 -175382409 + LTR67 LTR ERVL 426 546 -11 298 273 0 0 chr6 7033008 7033074 -175382168 + L2 LINE L2 3205 3270 -2 525 208 0 10 chr6 7033294 7033395 -175381847 + MER45A DNA AcHobo 79 178 0 825 124 0 0 chr6 7033945 7034074 -175381168 + (GGAA)n Simple_repeat Simple_repeat 1 129 0 302 198 47 0 chr6 7034078 7034184 -175381058 + GA-rich Low_complexity Low_complexity 5 115 0 21 36 0 0 chr6 7035032 7035060 -175380182 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 7035484 7035507 -175379735 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 531 244 30 75 chr6 7035782 7035983 -175379259 + MER112 DNA MER1_type 52 243 -17 1938 118 20 0 chr6 7035985 7036338 -175378904 - AluSx SINE Alu 0 359 1 272 218 90 13 chr6 7036765 7036843 -175378399 + LTR33A LTR ERVL 440 523 0 1779 129 0 0 chr6 7037133 7037388 -175377854 - AluSx SINE Alu -56 256 2 409 210 25 4 chr6 7037803 7037922 -175377320 + MER5A DNA MER1_type 24 186 -3 270 327 80 43 chr6 7038009 7038171 -175377071 + MIR SINE MIR 19 186 -76 306 328 11 17 chr6 7038376 7038550 -175376692 + A-rich Low_complexity Low_complexity 3 175 0 299 210 0 12 chr6 7039083 7039164 -175376078 + GA-rich Low_complexity Low_complexity 4 83 0 933 143 0 0 chr6 7040880 7041013 -175374229 - FLAM_C SINE Alu 0 133 1 7183 159 88 104 chr6 7041268 7041867 -175373375 - L1MC3 LINE L1 0 7785 7177 234 266 0 16 chr6 7041867 7041931 -175373311 - MLT1F1 LTR MaLR -460 107 45 7183 159 88 104 chr6 7041931 7043272 -175371970 - L1MC3 LINE L1 -608 7177 5810 465 285 201 11 chr6 7043345 7043608 -175371634 + L2 LINE L2 3001 3313 0 1851 119 25 14 chr6 7043878 7044164 -175371078 + AluSx SINE Alu 1 289 -23 1851 105 0 66 chr6 7044164 7044513 -175370729 + AluSx SINE Alu 1 329 0 1081 273 133 8 chr6 7044625 7045009 -175370233 + MER115 DNA AcHobo 5 436 -257 583 305 65 40 chr6 7045395 7045825 -175369417 - L1MC3 LINE L1 -405 5716 5276 1892 167 0 0 chr6 7046185 7046497 -175368745 - AluSx SINE Alu 0 312 1 226 361 139 5 chr6 7046701 7046917 -175368325 - L2 LINE L2 -1 3271 3027 636 177 18 0 chr6 7046923 7047036 -175368206 + FRAM SINE Alu 44 158 -18 1500 105 5 0 chr6 7047055 7047265 -175367977 - AluSg/x SINE Alu -17 295 85 187 86 57 29 chr6 7047577 7047612 -175367630 - MER5A DNA MER1_type -26 163 128 2209 90 0 3 chr6 7047615 7047916 -175367326 + AluSc SINE Alu 1 300 -9 610 281 77 108 chr6 7048225 7048617 -175366625 + MLT1K LTR MaLR 134 510 -78 657 178 31 8 chr6 7048617 7048746 -175366496 - FLAM_C SINE Alu 0 133 2 610 281 77 108 chr6 7048746 7048823 -175366419 + MLT1K LTR MaLR 510 588 0 1276 203 8 4 chr6 7049813 7050050 -175365192 + MER8 DNA MER2_type 2 239 0 822 201 12 6 chr6 7050050 7050214 -175365028 + MER58B DNA MER1_type 177 341 0 461 201 21 111 chr6 7050419 7050521 -175364721 - L2 LINE L2 -1 3312 3225 2081 133 0 13 chr6 7050521 7050838 -175364404 + AluSq SINE Alu 1 313 0 461 201 21 111 chr6 7050838 7050879 -175364363 - L2 LINE L2 -88 3225 3182 240 200 71 14 chr6 7050915 7050985 -175364257 - MIR SINE MIR -97 111 38 1952 105 10 10 chr6 7051835 7052129 -175363113 + AluSx SINE Alu 1 294 -18 715 250 71 95 chr6 7052427 7052646 -175362596 - L2 LINE L2 0 3313 3090 667 144 127 0 chr6 7052646 7052764 -175362478 + AluJo SINE Alu 1 133 -169 715 250 71 95 chr6 7052764 7052777 -175362465 - L2 LINE L2 -223 3090 3078 2259 105 0 6 chr6 7052777 7053091 -175362151 + AluSx SINE Alu 1 312 0 1245 202 73 35 chr6 7053095 7053382 -175361860 + AluJb SINE Alu 2 299 -3 715 250 71 95 chr6 7053382 7053639 -175361603 - L2 LINE L2 -238 3075 2830 262 278 56 0 chr6 7053835 7053925 -175361317 + L2 LINE L2 3217 3311 -2 224 279 63 0 chr6 7054585 7054664 -175360578 - MER5A DNA MER1_type -73 116 33 676 239 117 5 chr6 7054745 7054942 -175360300 - MIR SINE MIR -26 236 18 197 203 102 34 chr6 7056312 7056371 -175358871 - MIR3 SINE MIR -133 75 13 1315 215 39 16 chr6 7056666 7056978 -175358264 - MER33 DNA MER1_type 0 324 6 296 100 0 20 chr6 7057120 7057170 -175358072 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 978 134 0 0 chr6 7057252 7057401 -175357841 + AluJo SINE Alu 134 282 -30 21 0 0 0 chr6 7057401 7057422 -175357820 + AT_rich Low_complexity Low_complexity 1 21 0 2082 119 3 0 chr6 7057593 7057896 -175357346 + AluSq SINE Alu 1 304 -9 243 88 0 0 chr6 7058394 7058428 -175356814 + (T)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr6 7058706 7058728 -175356514 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 209 156 0 0 chr6 7059158 7059190 -175356052 + MIR SINE MIR 114 145 -63 968 227 158 27 chr6 7059222 7059628 -175355614 - LTR16B LTR ERVL -4 460 2 2285 148 16 3 chr6 7059646 7060031 -175355211 - MLT1B LTR MaLR 0 390 1 348 331 39 6 chr6 7060113 7060291 -175354951 - HERV16 LTR ERVL -361 5403 5220 268 265 116 48 chr6 7060667 7060814 -175354428 - HERV16 LTR ERVL -4435 561 405 213 265 229 0 chr6 7061097 7061180 -175354062 + MIR SINE MIR 101 202 -60 1684 212 8 33 chr6 7061186 7061549 -175353693 + MLT1A1 LTR MaLR 1 354 -11 481 340 71 30 chr6 7061592 7061889 -175353353 + L1MC4a LINE L1 4619 4927 -1219 376 233 0 23 chr6 7061956 7062042 -175353200 - MER96 DNA MER1_type? -1 174 91 292 305 130 7 chr6 7062121 7062275 -175352967 + L1MC4a LINE L1 5729 5901 -1907 2346 58 0 0 chr6 7062992 7063283 -175351959 - AluY SINE Alu -14 297 7 27 0 0 0 chr6 7063332 7063359 -175351883 + AT_rich Low_complexity Low_complexity 1 27 0 2874 150 41 44 chr6 7063361 7063926 -175351316 + L1MB8 LINE L1 5476 6038 -140 1818 188 49 10 chr6 7063927 7064336 -175350906 - L1MC1 LINE L1 0 6333 5909 738 180 20 13 chr6 7064337 7064487 -175350755 + L1MB8 LINE L1 6027 6177 -1 1674 140 0 4 chr6 7064902 7065166 -175350076 - AluJo SINE Alu -9 303 41 611 145 192 87 chr6 7065305 7065477 -175349765 - MER20 DNA MER1_type -1 218 29 225 65 0 0 chr6 7065482 7065513 -175349729 + (TC)n Simple_repeat Simple_repeat 2 32 0 336 326 64 28 chr6 7065928 7066069 -175349173 - MIR SINE MIR -12 250 105 573 157 352 179 chr6 7066083 7066316 -175348926 + MLT1H LTR MaLR 14 206 -343 2293 89 0 0 chr6 7066316 7066620 -175348622 + AluY SINE Alu 1 304 -7 573 157 352 179 chr6 7066620 7066821 -175348421 + MLT1H LTR MaLR 206 549 0 723 207 47 61 chr6 7067610 7067823 -175347419 + MER63A DNA MER1_type 1 210 0 682 313 78 14 chr6 7067850 7068134 -175347108 - MLT1J LTR MaLR 0 511 210 931 135 0 59 chr6 7068181 7068351 -175346891 - AluJo SINE Alu -17 295 136 264 279 171 16 chr6 7068414 7068543 -175346699 - MLT1J LTR MaLR -362 149 1 304 261 52 0 chr6 7068789 7068904 -175346338 - MER113 DNA MER1_type? -399 122 2 294 203 0 16 chr6 7068921 7068985 -175346257 - MIR SINE MIR -61 147 85 1789 133 11 11 chr6 7069033 7069318 -175345924 + AluJb SINE Alu 1 285 -27 217 369 67 34 chr6 7070053 7070232 -175345010 + L3b LINE CR1 1372 1556 -27 928 249 39 35 chr6 7071162 7071419 -175343823 - MLT1J LTR MaLR 0 511 254 894 250 169 43 chr6 7071423 7071907 -175343335 + MLT1H LTR MaLR 1 545 -4 2257 90 3 0 chr6 7072211 7072547 -175342695 + AluSx SINE Alu 1 337 0 27 48 0 32 chr6 7072565 7072589 -175342653 + AT_rich Low_complexity Low_complexity 1 24 -37 760 171 0 23 chr6 7072589 7072718 -175342524 - AluJo SINE Alu -176 126 1 27 48 0 32 chr6 7072718 7072756 -175342486 + AT_rich Low_complexity Low_complexity 24 61 0 363 347 70 14 chr6 7072967 7073180 -175342062 + L3b LINE CR1 1351 1575 -8 300 255 39 20 chr6 7073217 7073319 -175341923 - L2 LINE L2 -32 3281 3178 593 165 122 17 chr6 7073453 7073568 -175341674 + FLAM_C SINE Alu 1 127 -6 1540 248 118 83 chr6 7073718 7074160 -175341082 + Charlie2a DNA MER1_type 36 461 -2401 237 83 0 0 chr6 7074160 7074196 -175341046 + (TG)n Simple_repeat Simple_repeat 1 36 0 1540 248 118 83 chr6 7074196 7074539 -175340703 + Charlie2a DNA MER1_type 461 791 -2071 6530 42 0 0 chr6 7074539 7075309 -175339933 + L1PA6 LINE L1 5384 6153 -1 1540 248 118 83 chr6 7075309 7075383 -175339859 + Charlie2a DNA MER1_type 791 861 -2001 1837 102 0 8 chr6 7075383 7075638 -175339604 + AluSx SINE Alu 47 299 -13 1540 248 118 83 chr6 7075638 7075678 -175339564 + Charlie2a DNA MER1_type 861 968 -1894 631 331 35 3 chr6 7075744 7076034 -175339208 - L1MC4a LINE L1 -1878 5930 5632 1998 128 3 0 chr6 7076709 7076999 -175338243 + AluSq SINE Alu 6 296 -17 541 225 0 180 chr6 7077028 7077295 -175337947 - MIR SINE MIR -8 254 36 360 0 0 0 chr6 7077300 7077340 -175337902 + (TG)n Simple_repeat Simple_repeat 2 41 0 1423 259 80 35 chr6 7077358 7077436 -175337806 - MLT1J LTR MaLR -3 508 435 2250 113 0 0 chr6 7077436 7077745 -175337497 + AluSg SINE Alu 1 309 -1 1423 259 80 35 chr6 7077745 7078152 -175337090 - MLT1J LTR MaLR -76 435 1 373 307 246 34 chr6 7078165 7079018 -175336224 - L3 LINE CR1 0 1577 544 400 245 93 29 chr6 7079210 7079349 -175335893 - L2 LINE L2 0 3272 3125 * 594 267 99 29 chr6 7079340 7079574 -175335668 + L2 LINE L2 2682 2898 -415 579 53 0 0 chr6 7079574 7079649 -175335593 + (CATAC)n Simple_repeat Simple_repeat 2 76 0 594 267 99 29 chr6 7079649 7079925 -175335317 + L2 LINE L2 2898 3233 -80 273 119 0 0 chr6 7079982 7080024 -175335218 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 295 275 161 34 chr6 7080051 7080200 -175335042 - L2 LINE L2 -176 3096 2929 302 401 70 13 chr6 7080300 7080513 -175334729 - L2 LINE L2 -508 2806 2606 580 274 60 19 chr6 7080513 7080604 -175334638 - MER58A DNA MER1_type -2196 224 138 1916 146 3 3 chr6 7080604 7080912 -175334330 + AluJo SINE Alu 1 308 -4 1686 145 10 27 chr6 7080921 7081218 -175334024 + AluJb SINE Alu 1 292 -20 580 274 60 19 chr6 7081218 7081331 -175333911 - MER58A DNA MER1_type -2289 131 1 302 401 70 13 chr6 7081331 7081419 -175333823 - L2 LINE L2 -708 2606 2488 187 123 26 61 chr6 7082251 7082284 -175332958 + A-rich Low_complexity Low_complexity 2 35 -76 846 141 0 0 chr6 7082284 7082405 -175332837 + FLAM_C SINE Alu 1 121 -12 187 123 26 61 chr6 7082405 7082485 -175332757 + A-rich Low_complexity Low_complexity 35 111 0 2210 97 0 7 chr6 7085041 7085349 -175329893 + AluY SINE Alu 1 306 -5 2085 101 0 33 chr6 7085353 7085659 -175329583 + AluSg SINE Alu 1 296 -14 1652 180 20 3 chr6 7085665 7085965 -175329277 + L1MB3 LINE L1 5815 6119 -64 733 184 73 0 chr6 7085970 7086106 -175329136 + AluJb SINE Alu 150 295 -17 317 150 0 150 chr6 7086106 7086150 -175329092 + L1MB2 LINE L1 6097 6125 -46 2197 71 27 10 chr6 7086150 7086444 -175328798 - AluSx SINE Alu -13 299 1 317 150 0 150 chr6 7086444 7086479 -175328763 + L1MB2 LINE L1 6125 6164 -7 354 301 199 5 chr6 7086866 7087052 -175328190 + MIR SINE MIR 4 225 -37 671 288 142 34 chr6 7087378 7087815 -175327427 - LTR33A LTR ERVL -16 507 24 185 235 98 0 chr6 7088543 7088594 -175326648 - MIR SINE MIR -97 165 110 209 351 0 14 chr6 7088760 7088834 -175326408 + GA-rich Low_complexity Low_complexity 2 74 0 219 232 104 48 chr6 7090425 7090550 -175324692 + MIR SINE MIR 17 148 -60 310 255 106 0 chr6 7090786 7090880 -175324362 + MER5A DNA MER1_type 2 105 -84 875 206 33 0 chr6 7090949 7091129 -175324113 - MER5A DNA MER1_type -3 186 1 2038 123 3 0 chr6 7091432 7091734 -175323508 - AluSx SINE Alu -9 303 1 1867 148 0 3 chr6 7091909 7092207 -175323035 + AluJb SINE Alu 1 297 -15 1314 192 16 4 chr6 7092501 7092775 -175322467 + AluJo SINE Alu 30 306 0 356 277 0 27 chr6 7092828 7092940 -175322302 - L1ME LINE L1 -307 5814 5706 3028 100 5 0 chr6 7093036 7093466 -175321776 + L1PA14 LINE L1 5728 6159 -2 261 302 84 20 chr6 7093503 7093705 -175321537 - L1ME LINE L1 -659 5511 5297 2237 185 49 29 chr6 7094208 7094699 -175320543 + LTR40a LTR ERVL 19 519 0 404 271 235 28 chr6 7094878 7095129 -175320113 + L3 LINE CR1 1252 1554 -23 2031 88 32 0 chr6 7095498 7095783 -175319459 - AluSp SINE Alu -19 294 1 440 213 11 11 chr6 7096176 7096270 -175318972 + MIR SINE MIR 46 139 -69 1982 133 0 0 chr6 7096320 7096620 -175318622 + AluSg SINE Alu 1 300 -10 252 0 0 0 chr6 7096621 7096649 -175318593 + (TA)n Simple_repeat Simple_repeat 2 29 0 1767 156 32 0 chr6 7096650 7096932 -175318310 + AluJb SINE Alu 1 291 -21 990 184 36 31 chr6 7096937 7097160 -175318082 + L1MC1 LINE L1 6107 6330 -3 222 333 90 42 chr6 7098474 7098663 -175316579 - L2 LINE L2 -2 3270 3073 729 142 24 39 chr6 7099008 7099135 -175316107 - FLAM_A SINE Alu -10 132 8 1403 193 11 4 chr6 7099139 7099409 -175315833 - AluJb SINE Alu -40 272 1 185 262 83 48 chr6 7099591 7099675 -175315567 - L2 LINE L2 0 3272 3186 822 104 0 0 chr6 7099966 7100081 -175315161 - AluSg/x SINE Alu -10 302 188 3499 203 31 55 chr6 7100153 7100890 -175314352 - MER45B DNA AcHobo -213 827 112 2020 135 0 0 chr6 7100890 7101186 -175314056 + AluSx SINE Alu 1 296 -16 3499 203 31 55 chr6 7101186 7101296 -175313946 - MER45B DNA AcHobo -928 112 1 187 315 115 105 chr6 7101481 7101786 -175313456 - L2 LINE L2 -5 3267 2960 545 251 87 90 chr6 7101786 7101975 -175313267 - LTR16C LTR ERVL -2 489 300 1664 141 85 0 chr6 7101975 7102245 -175312997 - AluJo SINE Alu -15 297 5 545 251 87 90 chr6 7102245 7102421 -175312821 - LTR16C LTR ERVL -191 300 125 680 232 14 0 chr6 7102592 7102730 -175312512 - MER5A DNA MER1_type 0 189 50 380 286 207 0 chr6 7103080 7103220 -175312022 + LTR33 LTR ERVL 42 210 -311 248 301 82 20 chr6 7103342 7103488 -175311754 + LTR33 LTR ERVL 365 519 -2 191 61 30 0 chr6 7103719 7103752 -175311490 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 573 273 171 6 chr6 7104703 7104879 -175310363 - MIR SINE MIR -16 246 42 624 195 124 12 chr6 7104917 7105086 -175310156 + MER20 DNA MER1_type 32 219 0 1800 124 7 34 chr6 7105573 7105871 -175309371 + AluJb SINE Alu 1 290 -22 197 229 21 104 chr6 7106593 7106689 -175308553 - MER5A DNA MER1_type -93 96 9 2204 101 7 0 chr6 7107416 7107712 -175307530 - AluSx SINE Alu -14 298 1 632 260 13 104 chr6 7107738 7107969 -175307273 - MIR SINE MIR -10 252 43 524 153 0 0 chr6 7108998 7109083 -175306159 - AluJ/FRAM SINE Alu -1 311 227 1267 186 53 4 chr6 7109086 7109312 -175305930 + MLT1A1 LTR MaLR 127 363 -2 314 268 14 0 chr6 7109427 7109498 -175305744 - L2 LINE L2 -4 3309 3238 318 246 144 57 chr6 7110381 7110612 -175304630 - MIR SINE MIR 0 262 4 195 42 0 0 chr6 7110751 7110775 -175304467 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1446 137 121 19 chr6 7110799 7111055 -175304187 - AluJo SINE Alu -30 282 1 918 169 0 34 chr6 7111632 7111868 -175303374 - AluJb SINE Alu 0 312 121 212 271 164 21 chr6 7112157 7112297 -175302945 - MIR SINE MIR -12 250 91 1283 215 41 13 chr6 7112307 7112623 -175302619 - MER58B DNA MER1_type -16 325 1 234 261 14 43 chr6 7112721 7112790 -175302452 - MIR3 SINE MIR -134 74 8 519 66 0 0 chr6 7113383 7113459 -175301783 + (TG)n Simple_repeat Simple_repeat 1 76 0 327 302 56 24 chr6 7113861 7113987 -175301255 + L2 LINE L2 3127 3256 -16 269 236 57 89 chr6 7114576 7114699 -175300543 - L2 LINE L2 -16 3297 3179 291 54 0 0 chr6 7116710 7116747 -175298495 + (TG)n Simple_repeat Simple_repeat 1 37 0 1857 192 79 8 chr6 7119267 7119636 -175295606 - MSTD LTR MaLR 0 396 2 270 241 176 0 chr6 7120531 7120639 -175294603 - L2 LINE L2 -645 2669 2543 396 263 168 34 chr6 7121000 7121174 -175294068 + MIR SINE MIR 5 224 -38 2203 129 0 0 chr6 7121174 7121477 -175293765 + AluSx SINE Alu 1 303 -9 396 263 168 34 chr6 7121477 7121522 -175293720 + MIR SINE MIR 224 262 0 21 0 0 0 chr6 7121539 7121560 -175293682 + AT_rich Low_complexity Low_complexity 1 21 0 202 275 132 33 chr6 7122688 7122779 -175292463 + L2 LINE L2 3172 3271 -1 196 75 25 25 chr6 7122810 7122850 -175292392 + (CCCTAA)n Simple_repeat Simple_repeat 1 40 0 235 342 25 0 chr6 7122942 7123021 -175292221 - MIR3 SINE MIR -2 206 126 472 292 30 55 chr6 7123675 7123877 -175291365 - MIR SINE MIR -53 209 13 1118 147 12 0 chr6 7124170 7124340 -175290902 + AluJb SINE Alu 138 309 -3 2529 41 3 0 chr6 7125651 7125945 -175289297 - AluY SINE Alu -16 295 1 1732 180 3 10 chr6 7126065 7126376 -175288866 - AluJo SINE Alu -3 309 1 455 327 210 13 chr6 7126506 7126901 -175288341 - L3 LINE CR1 -20 1557 1085 806 216 72 19 chr6 7126915 7127123 -175288119 - MIR SINE MIR -10 252 34 754 237 17 6 chr6 7127139 7127312 -175287930 - MER5B DNA MER1_type -3 175 1 869 139 0 8 chr6 7127983 7128112 -175287130 - FLAM_C SINE Alu -5 128 1 818 157 6 0 chr6 7129290 7129449 -175285793 + (CA)n Simple_repeat Simple_repeat 2 161 0 288 115 0 0 chr6 7129449 7129501 -175285741 - MER4-int LTR ERV1 -5436 1162 1111 822 201 0 0 chr6 7129502 7129807 -175285435 + (CA)n Simple_repeat Simple_repeat 1 305 0 2211 142 0 0 chr6 7130482 7130793 -175284449 - AluSx SINE Alu -1 311 1 1950 176 3 0 chr6 7131326 7131633 -175283609 + AluJo SINE Alu 1 308 -4 374 272 191 0 chr6 7131854 7132001 -175283241 + MER5A DNA MER1_type 9 183 -6 1867 172 26 0 chr6 7132005 7132308 -175282934 + AluJb SINE Alu 1 311 -1 876 146 8 0 chr6 7132565 7132695 -175282547 + FLAM_C SINE Alu 1 131 -2 394 322 64 0 chr6 7133164 7133335 -175281907 + LTR33 LTR ERVL 2 183 -338 226 208 250 0 chr6 7133422 7133518 -175281724 + LTR33 LTR ERVL 327 446 -75 763 199 0 0 chr6 7133623 7133754 -175281488 - FLAM_A SINE Alu -2 131 1 2207 135 7 0 chr6 7134039 7134343 -175280899 - AluSx SINE Alu -6 306 1 2498 73 0 6 chr6 7134353 7134666 -175280576 - AluY SINE Alu 0 311 1 866 286 87 56 chr6 7134681 7134939 -175280303 + L1MB3 LINE L1 4674 4922 -1224 1969 128 0 35 chr6 7134939 7135252 -175279990 + AluSx SINE Alu 1 302 -10 866 286 87 56 chr6 7135252 7135532 -175279710 + L1MB3 LINE L1 4922 5229 -917 1891 157 26 13 chr6 7135572 7135878 -175279364 - 7SLRNA srpRNA srpRNA -6 314 5 438 282 70 78 chr6 7135897 7136053 -175279189 + L1MB3 LINE L1 5280 5436 -685 1699 137 98 0 chr6 7136053 7136333 -175278909 + AluSc SINE Alu 1 305 0 438 282 70 78 chr6 7136333 7136352 -175278890 + L1MB3 LINE L1 5436 5454 -667 2386 61 0 10 chr6 7136352 7136648 -175278594 + AluY SINE Alu 1 293 -18 438 282 70 78 chr6 7136648 7136856 -175278386 + L1MB3 LINE L1 5454 5662 -459 4402 160 22 66 chr6 7136894 7138158 -175277084 + pTR5 LTR ERV1 6 558 -156 1584 133 27 19 chr6 7138223 7138486 -175276756 + AluSx SINE Alu 10 274 -38 1484 182 16 0 chr6 7138600 7138858 -175276384 - AluJo SINE Alu -50 262 1 284 0 28 0 chr6 7139856 7139892 -175275350 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2084 114 41 0 chr6 7140397 7140780 -175274462 + L1MB3 LINE L1 5658 6182 -1 821 144 8 0 chr6 7140786 7140904 -175274338 + FLAM_C SINE Alu 1 119 -24 2537 63 0 3 chr6 7140974 7141277 -175273965 - AluY SINE Alu -9 302 1 8956 45 9 3 chr6 7141331 7143216 -175272026 - L1PA6 LINE L1 0 6154 4250 36 0 0 0 chr6 7143230 7143266 -175271976 + AT_rich Low_complexity Low_complexity 1 36 0 214 253 121 81 chr6 7143856 7143955 -175271287 + MIR SINE MIR 49 151 -111 427 174 0 0 chr6 7143955 7144024 -175271218 + Tigger2 DNA MER2_type 1 69 -2649 * 2422 149 27 18 chr6 7144014 7144456 -175270786 + Tigger2 DNA MER2_type 2273 2718 0 1742 149 53 4 chr6 7144458 7144621 -175270621 - AluJo SINE Alu -17 295 111 369 0 0 0 chr6 7144621 7144662 -175270580 + (TG)n Simple_repeat Simple_repeat 2 42 0 1742 149 53 4 chr6 7144662 7144779 -175270463 - AluJo SINE Alu -201 111 1 335 60 20 0 chr6 7144820 7144870 -175270372 + (TA)n Simple_repeat Simple_repeat 2 52 0 354 264 85 98 chr6 7145702 7145802 -175269440 + MIR SINE MIR 7 107 -155 1845 151 4 0 chr6 7145802 7146073 -175269169 - AluJo SINE Alu -40 272 1 354 264 85 98 chr6 7146073 7146124 -175269118 + MIR SINE MIR 107 157 -105 2372 75 0 0 chr6 7146124 7146426 -175268816 + AluY SINE Alu 3 304 0 354 264 85 98 chr6 7146426 7146518 -175268724 + MIR SINE MIR 157 249 -13 414 273 72 57 chr6 7146567 7146761 -175268481 - MIR SINE MIR 0 262 66 277 258 0 16 chr6 7146972 7147034 -175268208 - L2 LINE L2 -109 3163 3103 1535 148 94 32 chr6 7147115 7147392 -175267850 - AluJb SINE Alu -16 296 3 2179 133 68 0 chr6 7147465 7147848 -175267394 - L1MA9 LINE L1 0 6312 5904 1282 169 110 19 chr6 7147848 7148133 -175267109 + L1 LINE L1 4655 4971 -1175 2318 164 25 70 chr6 7148133 7148616 -175266626 + LOR1b LTR ERV1 1 461 0 1282 169 110 19 chr6 7148616 7148638 -175266604 + L1 LINE L1 4971 4990 -1156 180 0 0 0 chr6 7148801 7148821 -175266421 + (CATAC)n Simple_repeat Simple_repeat 1 20 0 3558 199 259 25 chr6 7149441 7150581 -175264661 + pTR5 LTR ERV1 1033 2438 0 505 277 36 42 chr6 7150584 7150750 -175264492 + MER5A DNA MER1_type 23 187 -2 1700 161 34 38 chr6 7151345 7151470 -175263772 + AluSx SINE Alu 1 125 -187 2255 105 10 10 chr6 7151470 7151776 -175263466 + AluSp SINE Alu 1 306 -7 1700 161 34 38 chr6 7151776 7151942 -175263300 + AluSx SINE Alu 125 291 -21 398 236 264 21 chr6 7151950 7152094 -175263148 + MER5A DNA MER1_type 11 189 0 272 265 174 10 chr6 7152220 7152318 -175262924 + MER5B DNA MER1_type 1 114 -64 1917 116 0 0 chr6 7152326 7152576 -175262666 - AluSx SINE Alu -14 298 49 3851 163 51 30 chr6 7152576 7153345 -175261897 - LTR1 LTR ERV1 0 785 1 358 137 0 7 chr6 7153345 7153414 -175261828 - Alu SINE Alu -250 52 1 240 243 142 95 chr6 7154457 7154526 -175260716 - L2 LINE L2 -2 3270 3206 2279 114 3 0 chr6 7154526 7154824 -175260418 + AluSg SINE Alu 1 299 -11 240 243 142 95 chr6 7154824 7154902 -175260340 - L2 LINE L2 -66 3206 3116 324 341 89 42 chr6 7155146 7155360 -175259882 - L1ME LINE L1 -516 5605 5382 211 314 43 0 chr6 7156056 7156126 -175259116 + MIR SINE MIR 58 130 -78 494 294 177 16 chr6 7156129 7156377 -175258865 - LTR16A LTR ERVL 0 450 163 362 289 70 16 chr6 7156442 7156570 -175258672 + MIR SINE MIR 128 262 0 243 250 0 33 chr6 7156618 7156678 -175258564 - L2 LINE L2 -1 3312 3255 249 290 121 0 chr6 7156771 7156895 -175258347 - L2 LINE L2 -351 2963 2825 1354 221 46 89 chr6 7156925 7157578 -175257664 + L1MC5 LINE L1 7300 7924 -37 1078 210 25 18 chr6 7157874 7158155 -175257087 + L1ME3 LINE L1 5648 5930 -232 447 243 128 7 chr6 7158178 7158326 -175256916 + L1ME3 LINE L1 5989 6154 -8 25 31 0 0 chr6 7158336 7158368 -175256874 + AT_rich Low_complexity Low_complexity 1 32 0 1637 151 55 27 chr6 7158433 7158725 -175256517 - AluJb SINE Alu -8 304 5 234 307 0 0 chr6 7158752 7158827 -175256415 + MER94 DNA DNA 3 77 -57 903 148 0 0 chr6 7158827 7158955 -175256287 + FLAM_C SINE Alu 1 128 -5 386 320 11 55 chr6 7159065 7159246 -175255996 - MER5B DNA MER1_type 0 178 6 496 213 46 19 chr6 7159550 7159658 -175255584 - MER81 DNA DNA -1 113 3 2193 102 58 0 chr6 7160337 7160631 -175254611 + AluSp SINE Alu 1 311 -2 2143 115 0 6 chr6 7160779 7161093 -175254149 + AluSx SINE Alu 1 312 0 279 356 83 8 chr6 7161387 7161519 -175253723 + MIR3 SINE MIR 60 201 -7 542 259 80 4 chr6 7161598 7161845 -175253397 + L1MB3 LINE L1 5263 5523 -641 1996 101 20 33 chr6 7162694 7163000 -175252242 + AluSx SINE Alu 1 302 -10 253 312 32 32 chr6 7163427 7163520 -175251722 - MIR SINE MIR -112 150 58 516 334 34 61 chr6 7164041 7164367 -175250875 + L2 LINE L2 2914 3230 -42 1823 142 3 16 chr6 7164795 7165104 -175250138 - AluJo SINE Alu -7 305 1 1100 146 16 5 chr6 7165336 7165521 -175249721 + MER5A DNA MER1_type 3 189 0 528 286 10 46 chr6 7165533 7165729 -175249513 + L2 LINE L2 3124 3312 -1 1979 109 0 7 chr6 7166428 7166713 -175248529 + AluSx SINE Alu 7 289 -23 514 191 191 0 chr6 7169312 7169422 -175245820 + FLAM_C SINE Alu 2 132 -11 23 0 0 0 chr6 7169424 7169447 -175245795 + AT_rich Low_complexity Low_complexity 1 23 0 287 256 80 16 chr6 7169562 7169687 -175245555 + L2 LINE L2 2148 2280 -1034 1517 173 35 7 chr6 7170056 7170339 -175244903 + AluJo SINE Alu 1 291 -21 180 0 0 0 chr6 7170345 7170365 -175244877 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1065 169 56 28 chr6 7170832 7171045 -175244197 + MER20 DNA MER1_type 1 219 0 2403 63 0 0 chr6 7171226 7171525 -175243717 - AluY SINE Alu -12 299 1 2180 100 0 0 chr6 7172022 7172322 -175242920 + AluSx SINE Alu 1 300 -12 1700 157 29 0 chr6 7173124 7173398 -175241844 + AluJb SINE Alu 1 282 -30 1890 132 0 11 chr6 7173599 7173886 -175241356 + AluSx SINE Alu 11 294 -18 1634 136 3 103 chr6 7174241 7174572 -175240670 + AluJb SINE Alu 5 302 -10 3437 183 27 0 chr6 7174767 7175397 -175239845 + L1MB3 LINE L1 5537 6183 0 792 107 0 0 chr6 7176268 7176371 -175238871 + AluJb SINE Alu 3 105 -207 1707 202 44 41 chr6 7176594 7176981 -175238261 - MLT1B LTR MaLR -2 388 1 417 315 43 16 chr6 7177015 7177199 -175238043 - MIR SINE MIR -46 216 28 2034 126 0 16 chr6 7177622 7177939 -175237303 - AluJb SINE Alu 0 312 1 272 250 0 0 chr6 7177965 7178041 -175237201 + A-rich Low_complexity Low_complexity 1 76 0 436 252 10 19 chr6 7178724 7178827 -175236415 + MER81 DNA DNA 11 112 -2 864 246 61 36 chr6 7179860 7180137 -175235105 + L1ME2 LINE L1 5758 6041 -123 840 211 0 0 chr6 7180139 7180300 -175234942 + FRAM SINE Alu 1 160 -16 354 216 82 21 chr6 7180300 7180397 -175234845 + L1ME2 LINE L1 6034 6136 -28 1721 167 0 26 chr6 7180410 7180715 -175234527 - AluSx SINE Alu -15 297 1 1638 164 3 7 chr6 7180762 7181048 -175234194 + AluJb SINE Alu 3 287 -25 209 58 77 0 chr6 7181048 7181100 -175234142 + (TA)n Simple_repeat Simple_repeat 1 56 0 312 361 19 0 chr6 7181134 7181242 -175234000 + L1MC4 LINE L1 6617 6726 -1316 212 271 0 0 chr6 7181365 7181413 -175233829 - L2 LINE L2 -35 3278 3231 347 338 136 49 chr6 7181743 7182237 -175233005 - L2 LINE L2 -534 2780 2244 199 296 0 19 chr6 7182363 7182417 -175232825 + MIR3 SINE MIR 13 65 -143 833 126 8 0 chr6 7182797 7182916 -175232326 + AluJb SINE Alu 5 124 -188 364 215 161 11 chr6 7182921 7183014 -175232228 - MER45 DNA AcHobo -1474 107 1 560 322 70 13 chr6 7183042 7183272 -175231970 + MIR SINE MIR 12 254 -8 335 328 107 0 chr6 7184433 7184564 -175230678 + LTR67 LTR ERVL 40 184 -373 2018 114 17 0 chr6 7185227 7185526 -175229716 + AluSg SINE Alu 1 304 -6 1224 206 24 14 chr6 7185555 7185846 -175229396 - AluJo SINE Alu -17 295 2 207 0 0 0 chr6 7185910 7185933 -175229309 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1903 88 84 0 chr6 7185935 7186208 -175229034 - AluSg SINE Alu -14 296 1 382 252 91 99 chr6 7186211 7186563 -175228679 + L1M4 LINE L1 3068 3402 -2744 1624 167 10 23 chr6 7186587 7186867 -175228375 + AluJb SINE Alu 1 278 -34 183 42 0 0 chr6 7186867 7186891 -175228351 + (CA)n Simple_repeat Simple_repeat 1 24 0 1624 167 10 23 chr6 7186891 7186915 -175228327 + AluJb SINE Alu 278 301 -11 2165 104 0 0 chr6 7186925 7187262 -175227980 + AluSx SINE Alu 1 337 0 1746 150 14 10 chr6 7187499 7187792 -175227450 - AluSx SINE Alu -18 294 1 338 362 107 31 chr6 7187804 7188000 -175227242 + L1MC4 LINE L1 6493 6703 -1339 283 190 0 35 chr6 7188002 7188060 -175227182 + L1MC5 LINE L1 6790 6845 -1116 1655 165 3 10 chr6 7188060 7188195 -175227047 + AluJo SINE Alu 1 135 -177 1596 136 0 4 chr6 7188195 7188445 -175226797 + AluSx SINE Alu 50 298 -14 1655 165 3 10 chr6 7188445 7188600 -175226642 + AluJo SINE Alu 135 289 -23 27 29 0 0 chr6 7188600 7188634 -175226608 + AT_rich Low_complexity Low_complexity 1 34 0 2057 118 3 3 chr6 7188641 7188945 -175226297 + AluSc SINE Alu 1 304 -5 312 194 0 133 chr6 7188946 7189044 -175226198 + L1MC4 LINE L1 6837 7002 -1040 2158 113 0 10 chr6 7189046 7189357 -175225885 + AluSx SINE Alu 1 308 -4 514 202 54 64 chr6 7189440 7189643 -175225599 + L1MC5 LINE L1 6959 7159 -802 1622 173 11 14 chr6 7189644 7189956 -175225286 + AluJo SINE Alu 1 311 0 521 158 0 98 chr6 7189968 7190101 -175225141 + L1MC5 LINE L1 7145 7264 -697 424 221 44 18 chr6 7190098 7190211 -175225031 - L1MC4a LINE L1 -422 7386 7271 * 2056 107 0 10 chr6 7190258 7190568 -175224674 + AluSc SINE Alu 1 307 -2 432 296 124 5 chr6 7190695 7190881 -175224361 + LTR67 LTR ERVL 350 557 0 327 25 0 0 chr6 7190901 7190941 -175224301 + (TG)n Simple_repeat Simple_repeat 1 40 0 1264 164 4 13 chr6 7191215 7191440 -175223802 + AluJo SINE Alu 1 223 -89 229 287 23 0 chr6 7191575 7191662 -175223580 - L1MC4 LINE L1 -1340 6702 6614 302 309 24 0 chr6 7191675 7191759 -175223483 - L1MC4 LINE L1 -1342 6700 6615 1663 155 7 4 chr6 7192881 7193159 -175222083 + AluJo SINE Alu 12 290 -22 24 0 0 0 chr6 7193159 7193183 -175222059 + AT_rich Low_complexity Low_complexity 1 24 0 3164 62 5 0 chr6 7193468 7193869 -175221373 - L1PA8A LINE L1 -27 6104 5702 22 0 0 0 chr6 7194135 7194157 -175221085 + AT_rich Low_complexity Low_complexity 1 22 0 2051 110 7 0 chr6 7194395 7194695 -175220547 + AluY SINE Alu 1 302 -9 2316 60 0 23 chr6 7195299 7195600 -175219642 + AluY SINE Alu 1 294 -17 182 318 143 0 chr6 7196034 7196097 -175219145 - L2 LINE L2 -3 3310 3239 54 73 0 0 chr6 7196162 7196272 -175218970 + AT_rich Low_complexity Low_complexity 1 110 0 1611 156 4 7 chr6 7196293 7196568 -175218674 - AluJo SINE Alu -18 294 21 2291 100 3 0 chr6 7196626 7196935 -175218307 - AluSx SINE Alu -2 310 1 608 202 0 0 chr6 7197302 7197401 -175217841 - AluJ/FLAM SINE Alu -212 100 2 659 237 31 36 chr6 7197720 7197936 -175217306 + MIR SINE MIR 46 261 -1 1978 118 37 0 chr6 7197941 7198238 -175217004 - AluSx SINE Alu -4 308 1 602 328 172 12 chr6 7198279 7198867 -175216375 + L2 LINE L2 1965 2646 -668 867 113 0 0 chr6 7199293 7199408 -175215834 + AluSq/x SINE Alu 10 124 -189 3749 156 30 66 chr6 7199409 7199916 -175215326 + L1MB8 LINE L1 5308 5832 -346 1903 99 102 0 chr6 7199916 7200199 -175215043 + AluSx SINE Alu 1 312 0 3749 156 30 66 chr6 7200199 7200291 -175214951 + L1MB8 LINE L1 5832 5926 -252 1792 150 20 3 chr6 7200291 7200585 -175214657 - AluJb SINE Alu -13 299 1 3749 156 30 66 chr6 7200585 7200791 -175214451 + L1MB8 LINE L1 5926 6085 -93 207 0 0 0 chr6 7201022 7201045 -175214197 + (TTA)n Simple_repeat Simple_repeat 2 24 0 821 120 8 0 chr6 7201059 7201176 -175214066 - FLAM_C SINE Alu -15 118 1 765 289 125 14 chr6 7201331 7201698 -175213544 + MLT1I LTR MaLR 1 408 -1 346 322 29 47 chr6 7201700 7201871 -175213371 - MIR SINE MIR -16 246 79 362 237 0 13 chr6 7202080 7202156 -175213086 + Tigger5 DNA MER2_type 1 75 -2248 258 192 19 0 chr6 7202173 7202225 -175213017 - Tigger5 DNA MER2_type -20 2303 2251 1795 155 14 3 chr6 7202239 7202536 -175212706 + AluJb SINE Alu 2 301 -11 426 167 0 0 chr6 7202538 7202604 -175212638 + Tigger5 DNA MER2_type 2258 2323 0 255 240 154 23 chr6 7202760 7202910 -175212332 + MIR SINE MIR 23 201 -61 1400 177 108 63 chr6 7202910 7203289 -175211953 + MSTD LTR MaLR 1 396 0 255 240 154 23 chr6 7203289 7203308 -175211934 + MIR SINE MIR 201 216 -46 270 249 13 81 chr6 7203940 7204061 -175211181 - MIR SINE MIR -84 124 20 1411 227 31 68 chr6 7204070 7204380 -175210862 + MER58B DNA MER1_type 3 300 -2120 849 158 0 23 chr6 7204380 7204513 -175210729 - FLAM_C SINE Alu -3 130 1 1411 227 31 68 chr6 7204513 7204554 -175210688 + MER58B DNA MER1_type 300 341 0 232 267 0 17 chr6 7204584 7204644 -175210598 - MIR SINE MIR -122 140 82 485 266 5 65 chr6 7205434 7205618 -175209624 + L1MC4a LINE L1 7636 7808 0 2001 139 0 0 chr6 7205619 7205921 -175209321 + AluSx SINE Alu 1 302 -10 850 225 5 27 chr6 7205925 7206112 -175209130 + AluJb SINE Alu 130 312 0 411 169 13 0 chr6 7206117 7206194 -175209048 + MER116 DNA Mariner 2 79 -1 2207 82 0 0 chr6 7206811 7207091 -175208151 + AluSp SINE Alu 1 280 -33 393 75 0 0 chr6 7207097 7207150 -175208092 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1054 211 30 35 chr6 7207580 7207686 -175207556 - MLT1C LTR MaLR -16 451 346 592 229 91 108 chr6 7207686 7208092 -175207150 - MER93a LTR ERV1 -3 399 1 1054 211 30 35 chr6 7208092 7208217 -175207025 - MLT1C LTR MaLR -121 346 221 1017 112 0 0 chr6 7208230 7208373 -175206869 - FLAM_C SINE Alu 0 143 1 1693 154 6 26 chr6 7208375 7208687 -175206555 - AluJb SINE Alu -6 306 1 1326 133 43 0 chr6 7208687 7208898 -175206344 - MLT1C LTR MaLR -233 234 15 247 392 8 0 chr6 7209158 7209283 -175205959 + MIR3 SINE MIR 30 155 -53 183 148 0 0 chr6 7210456 7210483 -175204759 - MIR SINE MIR -99 109 83 221 284 153 9 chr6 7210547 7210693 -175204549 + MIR SINE MIR 5 140 -68 739 187 0 8 chr6 7211530 7211664 -175203578 + FLAM_C SINE Alu 1 133 0 318 284 14 85 chr6 7211839 7211928 -175203314 + L1MB3 LINE L1 5562 5639 -482 848 219 0 0 chr6 7211928 7212097 -175203145 - L1PA16 LINE L1 -17 6149 5981 318 284 14 85 chr6 7212097 7212148 -175203094 + L1MB3 LINE L1 5639 5692 -429 293 240 10 39 chr6 7212184 7212288 -175202954 + L1ME4a LINE L1 5990 6090 -31 2457 162 18 16 chr6 7212288 7212738 -175202504 + L1MB3 LINE L1 5733 6183 0 1949 116 24 10 chr6 7212813 7213105 -175202137 + AluSx SINE Alu 1 296 -16 1574 150 14 31 chr6 7213569 7213855 -175201387 + AluJo SINE Alu 1 281 -31 1584 174 9 43 chr6 7213856 7214178 -175201064 + AluJo SINE Alu 1 311 -1 2164 119 0 0 chr6 7214206 7214517 -175200725 + AluSx SINE Alu 1 311 -1 1513 140 17 0 chr6 7214517 7214753 -175200489 - L1MB2 LINE L1 -251 5920 5681 229 240 200 30 chr6 7214845 7214945 -175200297 - MIR3 SINE MIR -3 205 89 1350 133 195 8 chr6 7216106 7216362 -175198880 + AluSg1 SINE Alu 1 304 -5 1534 159 19 48 chr6 7216382 7216696 -175198546 + AluJb SINE Alu 6 310 -2 303 203 0 0 chr6 7216711 7216780 -175198462 + GA-rich Low_complexity Low_complexity 4 72 0 543 148 218 0 chr6 7216790 7216891 -175198351 + AluJb SINE Alu 2 124 -188 22 35 0 0 chr6 7217095 7217124 -175198118 + AT_rich Low_complexity Low_complexity 1 29 0 2058 120 7 3 chr6 7217495 7217794 -175197448 + AluSq SINE Alu 1 300 -13 1617 131 3 125 chr6 7218377 7218721 -175196521 + AluJo SINE Alu 1 302 0 204 188 0 0 chr6 7218729 7218761 -175196481 + (TG)n Simple_repeat Simple_repeat 1 32 0 1433 158 0 0 chr6 7218922 7219143 -175196099 - AluJo SINE Alu -91 221 1 622 248 90 85 chr6 7219143 7219579 -175195663 + MLT1E1 LTR MaLR 11 518 -136 353 141 3 7 chr6 7219579 7219636 -175195606 + Alu SINE Alu 244 285 -17 2172 105 0 10 chr6 7219636 7219942 -175195300 + AluSx SINE Alu 1 303 -9 353 141 3 7 chr6 7219942 7219957 -175195285 + Alu SINE Alu 285 299 -3 846 143 0 0 chr6 7219957 7220083 -175195159 + FLAM_C SINE Alu 5 130 -3 712 235 34 0 chr6 7220115 7220264 -175194978 + MLT1E1 LTR MaLR 494 647 -7 461 261 71 69 chr6 7220281 7220573 -175194669 - L1MB2 LINE L1 -449 5672 5378 342 67 0 0 chr6 7220573 7220618 -175194624 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 461 261 71 69 chr6 7220618 7220646 -175194596 - L1MB2 LINE L1 -743 5378 5352 1844 110 0 0 chr6 7220653 7220916 -175194326 - AluSq SINE Alu -8 305 43 2164 110 3 0 chr6 7220945 7221253 -175193989 - AluSx SINE Alu -3 309 1 273 254 61 43 chr6 7221339 7221524 -175193718 + L1MC/D LINE L1 5723 5829 -530 671 188 8 16 chr6 7221894 7222135 -175193107 + AluJ SINE Alu 2 133 -169 386 338 33 7 chr6 7222269 7222420 -175192822 + L2 LINE L2 3147 3301 -12 346 308 62 15 chr6 7222470 7222600 -175192642 + L2 LINE L2 2910 3045 -227 2132 107 3 0 chr6 7222621 7222912 -175192330 + AluSg SINE Alu 1 292 -18 22419 99 17 13 chr6 7223050 7226287 -175188955 + L1PA6 LINE L1 11 3261 -2885 7199 50 6 2 chr6 7226287 7227677 -175187565 + L1PA6 LINE L1 4762 6154 0 217 331 123 13 chr6 7227855 7228009 -175187233 + L2 LINE L2 3102 3272 0 917 179 6 0 chr6 7228659 7228827 -175186415 + AluJ SINE Alu 134 302 -10 2126 109 0 26 chr6 7228853 7229165 -175186077 + AluSq SINE Alu 1 304 -9 1670 172 34 0 chr6 7229935 7230231 -175185011 + AluJb SINE Alu 1 306 -6 207 69 0 0 chr6 7230807 7230836 -175184406 + (TC)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr6 7230951 7230973 -175184269 + (CA)n Simple_repeat Simple_repeat 2 23 0 1813 162 0 7 chr6 7231104 7231401 -175183841 + AluJo SINE Alu 1 295 -17 2100 88 0 11 chr6 7231440 7231724 -175183518 - AluSx SINE Alu -17 295 15 805 185 0 0 chr6 7231784 7231914 -175183328 + AluJo SINE Alu 5 134 -178 587 209 124 0 chr6 7231981 7232110 -175183132 - MIR SINE MIR 0 262 118 759 122 0 0 chr6 7232127 7232234 -175183008 + FRAM SINE Alu 65 171 -5 333 304 0 0 chr6 7232235 7232314 -175182928 - MIR SINE MIR -182 80 2 1424 173 24 34 chr6 7233117 7233412 -175181830 - AluJb SINE Alu -9 303 12 195 179 0 26 chr6 7233525 7233564 -175181678 + L2 LINE L2 3276 3313 0 540 304 207 52 chr6 7233592 7233629 -175181613 - L2 LINE L2 -3 3269 3239 2280 157 171 28 chr6 7233629 7234125 -175181117 + MLT1F1 LTR MaLR 1 567 0 540 304 207 52 chr6 7234125 7235283 -175179959 - L2 LINE L2 -33 3239 1873 2229 94 0 0 chr6 7235307 7235604 -175179638 - AluY SINE Alu -14 297 1 2308 104 0 0 chr6 7235642 7235951 -175179291 - AluSg SINE Alu -1 309 1 431 269 134 7 chr6 7236359 7236508 -175178734 + MIR SINE MIR 75 242 -20 187 211 18 88 chr6 7236478 7236535 -175178707 + L2 LINE L2 3217 3269 -3 * 201 39 0 0 chr6 7236612 7236638 -175178604 + (TG)n Simple_repeat Simple_repeat 2 27 0 271 212 200 0 chr6 7236641 7236726 -175178516 - U13 snRNA snRNA 0 104 3 1971 84 22 0 chr6 7236848 7237148 -175178094 - AluSc SINE Alu 0 306 1 198 0 0 0 chr6 7237148 7237170 -175178072 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1693 149 0 24 chr6 7237170 7237459 -175177783 - AluJo SINE Alu -30 282 1 195 218 55 18 chr6 7237492 7237547 -175177695 + L2 LINE L2 3216 3272 0 264 272 88 40 chr6 7238584 7238709 -175176533 - MIR SINE MIR -61 147 17 231 61 0 0 chr6 7239709 7239742 -175175500 + (CA)n Simple_repeat Simple_repeat 2 34 0 2007 98 23 10 chr6 7239797 7240103 -175175139 + AluSx SINE Alu 2 311 -1 880 104 0 0 chr6 7240470 7240585 -175174657 + FLAM_C SINE Alu 4 118 -15 2171 100 3 0 chr6 7240874 7241175 -175174067 + AluSx SINE Alu 1 302 -10 638 246 172 15 chr6 7241825 7242028 -175173214 + MIR SINE MIR 28 262 0 207 0 0 0 chr6 7242201 7242224 -175173018 + (A)n Simple_repeat Simple_repeat 1 23 0 219 69 0 0 chr6 7242616 7242645 -175172597 + (GA)n Simple_repeat Simple_repeat 2 30 0 1109 129 0 12 chr6 7242753 7242923 -175172319 + AluSg/x SINE Alu 121 288 -24 700 189 115 80 chr6 7243854 7244166 -175171076 - L1MC5 LINE L1 -30 7931 7609 425 316 32 48 chr6 7244439 7244626 -175170616 + MIR3 SINE MIR 21 204 -4 333 344 55 12 chr6 7244775 7244938 -175170304 + L2 LINE L2 3144 3313 0 227 269 13 77 chr6 7244947 7245025 -175170217 + MIR SINE MIR 134 206 -56 1604 179 10 23 chr6 7245151 7245459 -175169783 - AluJo SINE Alu -8 304 1 2219 94 0 3 chr6 7245510 7245809 -175169433 - AluSp SINE Alu -15 298 1 342 200 19 150 chr6 7246324 7246484 -175168758 - MER103 DNA DNA -11 155 17 355 133 51 43 chr6 7246486 7246612 -175168630 - HsTC2 DNA Tc2 -44 1854 9 21 0 0 0 chr6 7247890 7247911 -175167331 + GC_rich Low_complexity Low_complexity 1 21 0 34 55 0 0 chr6 7248035 7248090 -175167152 + GC_rich Low_complexity Low_complexity 1 55 0 189 107 0 0 chr6 7248632 7248660 -175166582 + (CGGGGG)n Simple_repeat Simple_repeat 1 28 0 192 77 0 0 chr6 7248773 7248799 -175166443 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2212 98 0 0 chr6 7250136 7250442 -175164800 + AluY SINE Alu 1 306 -5 740 161 0 58 chr6 7250490 7250627 -175164615 - FLAM_C SINE Alu -13 130 2 335 137 0 0 chr6 7251433 7251484 -175163758 - FAM SINE Alu -10 165 115 2308 94 3 0 chr6 7251484 7251792 -175163450 - AluSp SINE Alu -4 309 1 2034 123 0 7 chr6 7251834 7252142 -175163100 + AluSx SINE Alu 1 306 -6 2357 61 0 0 chr6 7252191 7252487 -175162755 + AluY SINE Alu 1 296 -15 200 216 0 0 chr6 7252773 7252810 -175162432 + GA-rich Low_complexity Low_complexity 2 38 0 636 174 41 8 chr6 7253678 7253799 -175161443 + FLAM_C SINE Alu 1 125 -8 44 63 0 0 chr6 7253799 7253878 -175161364 + AT_rich Low_complexity Low_complexity 1 79 0 239 345 17 17 chr6 7254004 7254063 -175161179 + MER5A DNA MER1_type 68 126 -63 2226 92 0 7 chr6 7254063 7254366 -175160876 - AluSc SINE Alu -8 301 1 239 345 17 17 chr6 7254366 7254425 -175160817 + MER5A DNA MER1_type 125 186 -3 601 144 0 0 chr6 7255484 7255596 -175159646 + AluSg/x SINE Alu 195 306 0 501 103 4 0 chr6 7255596 7255673 -175159569 - L1MB2 LINE L1 -32 6136 6058 2052 114 0 0 chr6 7255941 7256231 -175159011 + AluSg SINE Alu 1 290 -20 242 208 0 0 chr6 7256231 7256279 -175158963 + AluJ/monomer SINE Alu 1 48 -252 2072 131 0 0 chr6 7256320 7256625 -175158617 - AluSx SINE Alu -7 305 1 1940 118 0 14 chr6 7257478 7257805 -175157437 - AluSx SINE Alu 0 323 1 767 155 0 0 chr6 7258175 7258291 -175156951 + FLAM_C SINE Alu 1 116 -17 352 171 0 85 chr6 7259394 7259476 -175155766 + Charlie7 DNA MER1_type 37 111 -2501 816 170 61 109 chr6 7259479 7259547 -175155695 - L1MB4 LINE L1 -2 6178 6108 2270 85 0 3 chr6 7259547 7259842 -175155400 - AluSq SINE Alu -19 294 1 816 170 61 109 chr6 7259842 7260020 -175155222 - L1MB4 LINE L1 -72 6108 5944 761 183 0 0 chr6 7260033 7260148 -175155094 - AluSq/x SINE Alu -197 116 2 1421 135 35 45 chr6 7260149 7260437 -175154805 - L1MB4 LINE L1 -564 5610 5326 1865 150 3 0 chr6 7260441 7260748 -175154494 + AluSx SINE Alu 1 308 -4 189 107 0 0 chr6 7260748 7260776 -175154466 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 254 222 30 12 chr6 7261146 7261221 -175154021 + AluS SINE Alu 1 61 -240 1209 117 15 5 chr6 7261322 7261527 -175153715 + AluY SINE Alu 82 288 -23 2417 55 0 0 chr6 7261645 7261955 -175153287 - AluY SINE Alu -1 310 1 2407 71 0 7 chr6 7262028 7262337 -175152905 - AluSg SINE Alu -3 307 1 2291 71 0 16 chr6 7262522 7262833 -175152409 + AluY SINE Alu 1 306 -5 2245 92 0 3 chr6 7262990 7263295 -175151947 + AluSq SINE Alu 1 304 -9 26 69 0 14 chr6 7263335 7263352 -175151890 + AT_rich Low_complexity Low_complexity 1 17 -54 2116 104 0 0 chr6 7263352 7263639 -175151603 - AluSg SINE Alu -23 287 1 26 69 0 14 chr6 7263639 7263693 -175151549 + AT_rich Low_complexity Low_complexity 17 71 0 1653 129 10 34 chr6 7263773 7264067 -175151175 - AluJo SINE Alu -3 309 23 1670 129 86 4 chr6 7264086 7264364 -175150878 - AluSq SINE Alu -12 301 1 896 158 0 0 chr6 7264902 7265035 -175150207 + FLAM_C SINE Alu 1 133 0 1994 160 0 0 chr6 7265331 7265638 -175149604 - AluJb SINE Alu -5 307 1 1951 120 6 19 chr6 7265658 7265974 -175149268 - AluSq SINE Alu 0 313 2 916 294 59 15 chr6 7265984 7266392 -175148850 - L1ME3A LINE L1 -220 5950 5525 2198 109 0 0 chr6 7266398 7266702 -175148540 - AluSx SINE Alu -8 304 1 548 162 45 78 chr6 7266730 7266794 -175148448 - L1MA9 LINE L1 0 6312 6247 2036 134 0 0 chr6 7266794 7267099 -175148143 + AluJb SINE Alu 1 305 -7 548 162 45 78 chr6 7267099 7267188 -175148054 - L1MA9 LINE L1 -65 6247 6164 1493 205 7 13 chr6 7267206 7267504 -175147738 + AluJo SINE Alu 1 296 -16 632 242 85 42 chr6 7267508 7267768 -175147474 - L1ME3A LINE L1 -633 5531 5261 254 159 14 43 chr6 7267830 7267899 -175147343 - L1ME3A LINE L1 -896 5250 5184 2312 85 3 0 chr6 7267950 7268256 -175146986 - AluSx SINE Alu -5 307 1 705 285 79 65 chr6 7268256 7268888 -175146354 - L1ME3A LINE L1 -976 5170 4530 676 210 46 149 chr6 7268898 7269160 -175146082 + MIR SINE MIR 2 236 -26 2138 116 6 61 chr6 7269260 7269606 -175145636 - MER7A DNA MER2_type 0 346 22 25 31 0 0 chr6 7269711 7269743 -175145499 + AT_rich Low_complexity Low_complexity 1 32 0 1915 120 0 3 chr6 7269888 7270201 -175145041 + AluSq SINE Alu 1 312 0 288 232 0 14 chr6 7270580 7270649 -175144593 + FLAM_A SINE Alu 66 133 0 261 83 0 0 chr6 7271133 7271169 -175144073 + (T)n Simple_repeat Simple_repeat 1 36 0 2182 88 3 3 chr6 7271404 7271698 -175143544 - AluSc SINE Alu -15 294 1 1004 103 0 0 chr6 7271698 7271834 -175143408 - AluSq/x SINE Alu -176 136 1 745 162 0 0 chr6 7271876 7271993 -175143249 + FLAM_A SINE Alu 1 117 -16 334 0 0 42 chr6 7272001 7272049 -175143193 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 482 210 259 19 chr6 7272049 7272206 -175143036 - MIR SINE MIR -5 257 62 382 283 38 38 chr6 7272547 7272706 -175142536 - MIR SINE MIR -25 237 79 2206 93 0 0 chr6 7273203 7273494 -175141748 - AluY SINE Alu -20 291 1 342 306 146 7 chr6 7273521 7273665 -175141577 - MIR3 SINE MIR -15 193 30 740 121 129 0 chr6 7274334 7274450 -175140792 + FLAM_A SINE Alu 1 131 -2 535 136 0 0 chr6 7274507 7274595 -175140647 - MER2 DNA MER2_type -135 210 123 909 141 0 15 chr6 7274596 7274731 -175140511 + FLAM_C SINE Alu 1 133 0 731 212 8 0 chr6 7274777 7274909 -175140333 - MER2 DNA MER2_type -210 135 3 320 236 22 0 chr6 7275001 7275090 -175140152 - L1ME3A LINE L1 -1 6169 6079 464 233 117 31 chr6 7275093 7275256 -175139986 + MIR SINE MIR 25 201 -61 2459 58 0 7 chr6 7275324 7275633 -175139609 + AluY SINE Alu 2 308 -3 775 148 0 16 chr6 7275843 7275965 -175139277 + FLAM_C SINE Alu 3 122 -11 493 189 13 26 chr6 7275986 7276139 -175139103 + GA-rich Low_complexity Low_complexity 3 153 0 2157 115 0 0 chr6 7276175 7276480 -175138762 + AluSx SINE Alu 1 305 -7 1848 122 29 0 chr6 7276773 7277052 -175138190 - AluSx SINE Alu -25 287 1 1323 101 0 0 chr6 7277057 7277255 -175137987 - L1MA5 LINE L1 -2 6298 6101 310 187 67 13 chr6 7277266 7277341 -175137901 - L1MA5A LINE L1 -172 6125 6047 2221 88 13 0 chr6 7277810 7278118 -175137124 + AluSx SINE Alu 1 312 0 1176 177 72 16 chr6 7278322 7278571 -175136671 + AluJo SINE Alu 33 295 -17 2258 97 3 0 chr6 7278645 7278956 -175136286 + AluSx SINE Alu 1 312 0 435 108 14 14 chr6 7278956 7279030 -175136212 + Charlie1 DNA MER1_type 2688 2761 0 242 347 42 28 chr6 7279190 7279334 -175135908 - L2 LINE L2 -18 3295 3150 481 324 77 6 chr6 7279394 7279564 -175135678 - MIR SINE MIR -26 236 55 2080 111 10 3 chr6 7280347 7280653 -175134589 - AluSx SINE Alu -4 308 1 2207 86 0 0 chr6 7280953 7281245 -175133997 + AluY SINE Alu 1 292 -19 2182 98 0 0 chr6 7281258 7281553 -175133689 + AluSx SINE Alu 3 297 -15 309 211 178 0 chr6 7282192 7282282 -175132960 + MIR SINE MIR 87 192 -70 2266 73 10 0 chr6 7282427 7282727 -175132515 + AluSp SINE Alu 1 303 -10 340 249 24 133 chr6 7283191 7283356 -175131886 + MIR3 SINE MIR 33 179 -29 4352 139 16 22 chr6 7285035 7285803 -175129439 - L1MB3 LINE L1 -7 6176 5414 439 281 62 65 chr6 7285807 7286113 -175129129 - L1M4 LINE L1 -1381 4765 4461 380 253 0 12 chr6 7286267 7286350 -175128892 + MIR SINE MIR 20 101 -161 283 334 30 30 chr6 7286431 7286730 -175128512 - L1M4 LINE L1 -1898 4248 3950 1290 117 20 101 chr6 7287222 7287386 -175127856 + MER30 DNA MER1_type 3 143 -87 2150 74 7 3 chr6 7287386 7287704 -175127538 - AluSx SINE Alu 0 319 1 1290 117 20 101 chr6 7287704 7287786 -175127456 + MER30 DNA MER1_type 143 230 0 21 0 0 0 chr6 7287834 7287855 -175127387 + AT_rich Low_complexity Low_complexity 1 21 0 892 131 0 21 chr6 7287884 7288029 -175127213 + AluJo SINE Alu 1 142 -170 2123 103 0 19 chr6 7288032 7288344 -175126898 + AluSx SINE Alu 6 311 -1 259 249 83 55 chr6 7288350 7288567 -175126675 - L1ME LINE L1 -218 5903 5681 191 88 29 0 chr6 7288641 7288675 -175126567 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1782 80 13 0 chr6 7288685 7288924 -175126318 - AluSp SINE Alu -58 255 14 2502 65 0 0 chr6 7288939 7289249 -175125993 - AluY SINE Alu -1 310 1 336 153 0 19 chr6 7289263 7289328 -175125914 + Alu SINE Alu 1 47 -254 273 236 149 63 chr6 7289331 7289505 -175125737 - L1ME LINE L1 -656 5465 5277 524 285 69 69 chr6 7289506 7289655 -175125587 + MIR SINE MIR 3 151 -111 2216 107 0 0 chr6 7289655 7289953 -175125289 + AluSx SINE Alu 1 298 -14 1908 109 39 3 chr6 7289956 7290240 -175125002 + AluSc SINE Alu 1 294 -15 524 285 69 69 chr6 7290240 7290332 -175124910 + MIR SINE MIR 152 248 -14 415 287 137 92 chr6 7290371 7290552 -175124690 - L1ME LINE L1 -912 5234 5063 2334 83 0 10 chr6 7290552 7290865 -175124377 - AluSq SINE Alu -3 310 1 415 287 137 92 chr6 7290865 7290928 -175124314 - L1ME LINE L1 -1083 5063 5004 1691 167 3 7 chr6 7290928 7291091 -175124151 - AluJb SINE Alu -20 292 130 348 24 0 0 chr6 7291091 7291132 -175124110 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1681 135 0 19 chr6 7291132 7291392 -175123850 - AluSx SINE Alu -31 281 27 1691 167 3 7 chr6 7291392 7291520 -175123722 - AluJb SINE Alu -180 132 1 2215 103 7 3 chr6 7291529 7291839 -175123403 - AluSq SINE Alu -2 311 1 415 287 137 92 chr6 7291839 7292008 -175123234 - L1ME LINE L1 -1149 4997 4791 379 323 65 8 chr6 7292192 7292316 -175122926 + MIR3 SINE MIR 14 144 -64 2012 115 0 35 chr6 7292429 7292742 -175122500 + AluSx SINE Alu 1 302 -10 1432 141 33 21 chr6 7292841 7293083 -175122159 - L1PB4 LINE L1 0 6156 5912 21 0 0 0 chr6 7293090 7293111 -175122131 + AT_rich Low_complexity Low_complexity 1 21 0 1743 175 0 0 chr6 7293119 7293405 -175121837 + AluJo SINE Alu 6 291 -21 193 146 42 0 chr6 7293429 7293477 -175121765 + (TA)n Simple_repeat Simple_repeat 2 51 0 200 252 65 9 chr6 7293478 7293585 -175121657 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 230 150 25 25 chr6 7293599 7293679 -175121563 + (TA)n Simple_repeat Simple_repeat 1 80 0 2075 107 10 3 chr6 7293704 7294003 -175121239 - AluSc SINE Alu -8 301 1 1604 150 42 71 chr6 7294081 7294225 -175121017 - MLT1B LTR MaLR -46 344 197 2004 131 0 10 chr6 7294225 7294539 -175120703 - AluY SINE Alu 0 311 1 1604 150 42 71 chr6 7294539 7294654 -175120588 - MLT1B LTR MaLR -193 197 80 1725 109 94 0 chr6 7294654 7294910 -175120332 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr6 7294910 7294931 -175120311 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1604 150 42 71 chr6 7294931 7295023 -175120219 - MLT1B LTR MaLR -308 82 1 742 173 8 24 chr6 7296023 7296150 -175119092 - FLAM_A SINE Alu -8 125 1 1238 151 18 14 chr6 7296181 7296399 -175118843 - MER20 DNA MER1_type 0 219 1 1407 78 0 0 chr6 7296733 7296912 -175118330 - AluSg/x SINE Alu -7 305 127 539 294 51 25 chr6 7296987 7297222 -175118020 + MIR SINE MIR 20 260 -2 1024 159 53 39 chr6 7297421 7297628 -175117614 - L1PB4 LINE L1 0 6156 5947 279 303 34 51 chr6 7298396 7298630 -175116612 + L2 LINE L2 2810 3039 -233 1943 89 78 0 chr6 7299240 7299521 -175115721 + AluSp SINE Alu 1 303 -10 1552 118 4 0 chr6 7299521 7299749 -175115493 + AluSg/x SINE Alu 82 311 -1 2159 118 3 0 chr6 7299780 7300086 -175115156 + AluSx SINE Alu 2 308 -4 22 0 0 0 chr6 7300122 7300144 -175115098 + AT_rich Low_complexity Low_complexity 1 22 0 40 49 0 0 chr6 7300199 7300260 -175114982 + AT_rich Low_complexity Low_complexity 1 61 0 301 235 37 99 chr6 7300260 7300422 -175114820 + L1MCa LINE L1 1941 2092 -4334 743 81 24 16 chr6 7300567 7300690 -175114552 - L1MB8 LINE L1 -9 6169 6046 899 209 0 0 chr6 7300705 7300858 -175114384 - FRAM SINE Alu -13 153 1 1248 138 4 43 chr6 7300862 7301093 -175114149 - AluSc SINE Alu -4 305 84 1868 116 56 3 chr6 7301093 7301378 -175113864 - AluSq SINE Alu -13 300 1 200 180 34 22 chr6 7301433 7301522 -175113720 + GA-rich Low_complexity Low_complexity 4 93 0 3962 138 14 2 chr6 7301537 7302160 -175113082 - L1MB7 LINE L1 -129 6055 5425 1678 189 3 0 chr6 7302272 7302578 -175112664 + AluJo SINE Alu 1 307 -5 22 0 0 0 chr6 7303481 7303503 -175111739 + GC_rich Low_complexity Low_complexity 1 22 0 922 199 8 34 chr6 7304602 7304869 -175110373 - AluSq SINE Alu -27 286 27 291 28 0 0 chr6 7305141 7305177 -175110065 + (CCG)n Simple_repeat Simple_repeat 3 38 0 204 263 0 0 chr6 7305266 7305323 -175109919 + G-rich Low_complexity Low_complexity 6 62 0 255 61 0 0 chr6 7305784 7305817 -175109425 + (TCC)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr6 7306270 7306320 -175108922 + GC_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr6 7306551 7306586 -175108656 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 7306752 7306774 -175108468 + GC_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr6 7307947 7307971 -175107271 + (TG)n Simple_repeat Simple_repeat 2 25 0 231 244 0 0 chr6 7308614 7308659 -175106583 - L2 LINE L2 -10 3262 3218 21 0 0 0 chr6 7309595 7309616 -175105626 + AT_rich Low_complexity Low_complexity 1 21 0 184 194 0 0 chr6 7311339 7311370 -175103872 + MIR SINE MIR 159 189 -73 1264 138 10 0 chr6 7311608 7311804 -175103438 - AluSg/x SINE Alu -29 281 84 662 181 132 64 chr6 7311860 7312064 -175103178 + MER20 DNA MER1_type 2 219 0 289 369 114 29 chr6 7313155 7313751 -175101491 + L2 LINE L2 2258 2904 -410 2261 78 16 16 chr6 7314863 7315172 -175100070 - AluSq SINE Alu 0 313 5 675 159 0 103 chr6 7315205 7315350 -175099892 - FLAM_C SINE Alu -2 131 2 25 31 0 0 chr6 7315434 7315466 -175099776 + AT_rich Low_complexity Low_complexity 1 32 0 2093 124 0 0 chr6 7315589 7315888 -175099354 - AluSx SINE Alu -13 299 1 888 154 0 0 chr6 7316273 7316416 -175098826 - FLAM_C SINE Alu 0 143 1 1564 114 146 4 chr6 7316577 7316831 -175098411 + AluSg1 SINE Alu 4 293 -16 321 236 194 36 chr6 7316926 7317091 -175098151 - L2 LINE L2 -211 3061 2871 1721 164 0 10 chr6 7317636 7317935 -175097307 + AluJb SINE Alu 1 296 -16 1614 134 91 14 chr6 7318143 7318281 -175096961 - AluJb SINE Alu -16 296 170 2171 107 0 13 chr6 7318281 7318591 -175096651 - AluSx SINE Alu -6 306 1 1614 134 91 14 chr6 7318591 7318727 -175096515 - AluJb SINE Alu -142 170 1 217 351 69 30 chr6 7319126 7319257 -175095985 - L3 LINE CR1 -89 1488 1353 1924 150 0 7 chr6 7319727 7320033 -175095209 - AluJb SINE Alu -8 304 1 1967 117 3 17 chr6 7320630 7320929 -175094313 - AluSx SINE Alu -17 295 1 2410 60 0 3 chr6 7321078 7321378 -175093864 - AluY SINE Alu -12 299 1 600 258 39 57 chr6 7322168 7322397 -175092845 - MIR SINE MIR -1 261 37 2278 64 0 0 chr6 7323450 7323767 -175091475 - AluSg SINE Alu 0 317 1 1627 115 78 0 chr6 7323787 7324030 -175091212 - AluSq SINE Alu -45 268 7 376 224 84 28 chr6 7325935 7326042 -175089200 - MIR SINE MIR -76 186 74 2153 103 0 0 chr6 7326154 7326445 -175088797 + AluSx SINE Alu 1 291 -21 2051 134 0 0 chr6 7328084 7328382 -175086860 - AluSg SINE Alu -12 298 1 2291 54 40 0 chr6 7328397 7328693 -175086549 - AluY SINE Alu -3 308 1 371 269 67 8 chr6 7328728 7328847 -175086395 - MIR SINE MIR -32 230 105 580 227 74 23 chr6 7328905 7329081 -175086161 - MIR SINE MIR -62 200 16 525 134 12 0 chr6 7329146 7329228 -175086014 - AluJ/FLAM SINE Alu -228 84 2 1538 167 20 33 chr6 7329331 7329519 -175085723 - AluSx SINE Alu -16 296 112 2185 112 0 0 chr6 7329519 7329822 -175085420 - AluSq SINE Alu -10 303 1 1538 167 20 33 chr6 7329822 7329933 -175085309 - AluSx SINE Alu -200 112 1 496 188 0 0 chr6 7329954 7330039 -175085203 + L2 LINE L2 3229 3313 0 298 216 9 117 chr6 7330567 7330678 -175084564 - MIR3 SINE MIR -6 202 104 681 197 0 0 chr6 7330908 7331025 -175084217 + FLAM_A SINE Alu 1 117 -16 189 107 0 0 chr6 7331025 7331053 -175084189 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 243 290 42 53 chr6 7331239 7331501 -175083741 - L1ME4a LINE L1 -65 6056 5798 759 183 0 22 chr6 7333905 7334042 -175081200 - FLAM_C SINE Alu -8 135 2 25 31 0 0 chr6 7338685 7338717 -175076525 + GC_rich Low_complexity Low_complexity 1 32 0 2209 65 0 20 chr6 7339410 7339702 -175075540 + AluSq SINE Alu 14 299 -14 237 65 0 0 chr6 7341307 7341338 -175073904 + (T)n Simple_repeat Simple_repeat 1 31 0 664 144 79 0 chr6 7341680 7341819 -175073423 + L1MA7 LINE L1 6133 6282 -9 189 107 0 0 chr6 7343434 7343462 -175071780 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 71 0 0 chr6 7343568 7343596 -175071646 + (CA)n Simple_repeat Simple_repeat 2 29 0 407 231 28 0 chr6 7345856 7345964 -175069278 + L1MD2 LINE L1 6249 6359 0 2176 106 0 0 chr6 7346398 7346690 -175068552 - AluSx SINE Alu -20 292 1 229 175 0 0 chr6 7346933 7346973 -175068269 - L3b LINE CR1 -3 1580 1541 2278 76 0 7 chr6 7347154 7347456 -175067786 - AluSx SINE Alu -12 300 1 189 0 0 0 chr6 7350573 7350594 -175064648 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 7350700 7350721 -175064521 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr6 7350881 7350912 -175064330 + (CA)n Simple_repeat Simple_repeat 2 32 0 509 274 37 93 chr6 7351190 7351544 -175063698 - MLT1I LTR MaLR -6 403 70 1084 138 69 0 chr6 7351680 7351854 -175063388 + MER5A DNA MER1_type 4 189 0 740 256 55 47 chr6 7351974 7352228 -175063014 - MIR SINE MIR -1 261 6 2041 122 0 13 chr6 7352767 7353078 -175062164 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 7353247 7353269 -175061973 + AT_rich Low_complexity Low_complexity 1 22 0 1957 124 0 7 chr6 7354617 7354915 -175060327 + AluSx SINE Alu 1 296 -16 185 139 0 28 chr6 7354915 7354942 -175060300 - L2 LINE L2 -22 3291 3264 1483 159 52 38 chr6 7354956 7355246 -175059996 + AluJb SINE Alu 1 294 -18 229 267 0 0 chr6 7357481 7357526 -175057716 - L2 LINE L2 -27 3286 3242 400 162 0 81 chr6 7357577 7357676 -175057566 - AluJ/FRAM SINE Alu -4 308 218 378 104 5 19 chr6 7357692 7357751 -175057491 - FLAM SINE Alu -11 122 71 21 71 0 0 chr6 7357772 7357814 -175057428 + AT_rich Low_complexity Low_complexity 1 42 0 1662 157 0 52 chr6 7357987 7358145 -175057097 - AluJb SINE Alu -22 290 154 2252 98 3 0 chr6 7358145 7358451 -175056791 - AluSc SINE Alu -2 307 1 1662 157 0 52 chr6 7358451 7358598 -175056644 - AluJb SINE Alu -158 154 1 229 0 54 27 chr6 7360287 7360324 -175054918 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 908 149 0 7 chr6 7360328 7360476 -175054766 - AluJb SINE Alu -24 288 142 2345 77 0 10 chr6 7360848 7361160 -175054082 - AluY SINE Alu -1 310 2 21 0 0 0 chr6 7364771 7364792 -175050450 + AT_rich Low_complexity Low_complexity 1 21 0 1992 82 85 4 chr6 7364817 7365098 -175050144 - AluSq SINE Alu -9 304 1 213 304 0 0 chr6 7365328 7365384 -175049858 - MIR SINE MIR -96 166 111 2192 94 20 0 chr6 7365446 7365744 -175049498 + AluSx SINE Alu 1 304 -8 420 304 193 46 chr6 7365863 7366277 -175048965 - L3 LINE CR1 -2 1575 1101 262 293 82 24 chr6 7366283 7366469 -175048773 + MIR SINE MIR 11 255 -7 453 209 85 52 chr6 7368335 7368488 -175046754 - MER5A DNA MER1_type -3 186 29 392 250 98 38 chr6 7368990 7369122 -175046120 + MIR SINE MIR 64 203 -59 1639 179 3 0 chr6 7369415 7369712 -175045530 - AluJo SINE Alu -14 298 1 761 177 8 0 chr6 7369884 7370014 -175045228 - FLAM_C SINE Alu -1 132 2 1550 109 97 4 chr6 7370742 7370989 -175044253 + AluSx SINE Alu 42 311 -1 1171 118 129 86 chr6 7371002 7371281 -175043961 + AluSx SINE Alu 21 311 -1 192 125 0 0 chr6 7371948 7371980 -175043262 + (AAATG)n Simple_repeat Simple_repeat 4 35 0 1981 137 13 0 chr6 7372070 7372376 -175042866 - AluSx SINE Alu -2 310 1 189 0 0 0 chr6 7372376 7372397 -175042845 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1794 147 7 3 chr6 7373383 7373676 -175041566 - AluJb SINE Alu -10 302 9 2101 117 7 7 chr6 7374402 7374710 -175040532 + AluSx SINE Alu 1 308 -4 1561 149 16 68 chr6 7375009 7375180 -175040062 - AluJo SINE Alu -19 293 144 2039 139 7 0 chr6 7375180 7375490 -175039752 - AluSx SINE Alu 0 312 1 1561 149 16 68 chr6 7375490 7375627 -175039615 - AluJo SINE Alu -168 144 1 23 54 0 0 chr6 7375627 7375664 -175039578 + AT_rich Low_complexity Low_complexity 1 37 0 578 169 0 48 chr6 7376742 7376866 -175038376 - FLAM_A SINE Alu 0 142 25 21 36 0 0 chr6 7377264 7377292 -175037950 + AT_rich Low_complexity Low_complexity 1 28 0 762 168 0 8 chr6 7377292 7377417 -175037825 - FLAM_C SINE Alu -17 126 3 295 277 85 11 chr6 7380512 7380606 -175034636 - L1ME LINE L1 -519 5602 5502 203 286 0 0 chr6 7380661 7380710 -175034532 + CT-rich Low_complexity Low_complexity 4 52 0 246 343 20 10 chr6 7380842 7380941 -175034301 - L2 LINE L2 -7 3306 3207 671 177 23 23 chr6 7381537 7381667 -175033575 + FLAM_A SINE Alu 1 130 -3 213 65 0 0 chr6 7381730 7381761 -175033481 + (TTA)n Simple_repeat Simple_repeat 3 33 0 27 0 0 0 chr6 7381874 7381901 -175033341 + AT_rich Low_complexity Low_complexity 1 27 0 896 102 0 0 chr6 7381902 7382020 -175033222 - FLAM_C SINE Alu -19 124 7 2239 101 0 0 chr6 7382755 7383053 -175032189 + AluSx SINE Alu 1 298 -14 698 255 98 13 chr6 7383277 7383512 -175031730 + MIR SINE MIR 5 259 -3 273 224 19 118 chr6 7383780 7383941 -175031301 + MER5A DNA MER1_type 21 165 -24 575 281 49 0 chr6 7384608 7384772 -175030470 - MIR SINE MIR -8 254 83 450 0 0 0 chr6 7385008 7385058 -175030184 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 671 101 50 0 chr6 7385058 7385157 -175030085 - HY1 scRNA scRNA -8 104 1 23 33 0 0 chr6 7385234 7385264 -175029978 + AT_rich Low_complexity Low_complexity 1 30 0 1818 132 3 52 chr6 7385341 7385668 -175029574 + AluSx SINE Alu 1 311 -1 249 159 0 0 chr6 7385883 7385927 -175029315 + (TG)n Simple_repeat Simple_repeat 2 45 0 1340 102 0 11 chr6 7385927 7386114 -175029128 - AluSg/x SINE Alu -32 280 96 464 315 31 0 chr6 7387807 7387937 -175027305 + MIR SINE MIR 11 144 -118 267 274 115 0 chr6 7387982 7388095 -175027147 + MIR SINE MIR 137 262 0 231 254 17 0 chr6 7388899 7388958 -175026284 - L1MB8 LINE L1 -20 6158 6099 * 1314 180 15 15 chr6 7388944 7389211 -175026031 - L1MB8 LINE L1 -345 5833 5567 1941 212 172 7 chr6 7389214 7389846 -175025396 - L1MB8 LINE L1 -1573 4573 3860 1955 132 0 0 chr6 7389855 7390144 -175025098 - AluSx SINE Alu -18 294 6 2609 207 36 69 chr6 7390150 7391047 -175024195 - L1MB8 LINE L1 -2690 3456 2590 275 273 322 0 chr6 7391071 7391192 -175024050 - MIR SINE MIR -91 171 12 1948 119 89 18 chr6 7391192 7391242 -175024000 - MER46B DNA MER2_type -2495 236 191 200 57 0 29 chr6 7391242 7391277 -175023965 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1948 119 89 18 chr6 7391277 7391563 -175023679 - MER46B DNA MER2_type -2540 191 1 21 0 0 0 chr6 7391894 7391915 -175023327 + AT_rich Low_complexity Low_complexity 1 21 0 1702 149 0 4 chr6 7391924 7392192 -175023050 + AluSx SINE Alu 1 267 -45 700 272 49 0 chr6 7392530 7392714 -175022528 + MIR SINE MIR 70 262 0 279 104 0 0 chr6 7393855 7393903 -175021339 + (T)n Simple_repeat Simple_repeat 1 48 0 30 27 0 0 chr6 7394352 7394389 -175020853 + AT_rich Low_complexity Low_complexity 1 37 0 1386 162 79 0 chr6 7395089 7395330 -175019912 + AluSx SINE Alu 31 290 -22 276 273 165 8 chr6 7396878 7396999 -175018243 + MIR SINE MIR 117 256 -6 1006 150 0 0 chr6 7397314 7397499 -175017743 - AluJb SINE Alu 0 306 122 315 152 0 0 chr6 7397836 7397882 -175017360 + L1MC4 LINE L1 6658 6703 -1339 396 59 0 0 chr6 7397887 7397938 -175017304 + (TG)n Simple_repeat Simple_repeat 2 52 0 1989 105 59 0 chr6 7397939 7398225 -175017017 - AluSq SINE Alu -10 303 1 286 343 29 25 chr6 7400197 7400436 -175014806 + L3 LINE CR1 1043 1282 -295 557 196 10 0 chr6 7400930 7401027 -175014215 + FRAM SINE Alu 63 160 -16 637 256 18 0 chr6 7402804 7402972 -175012270 - MER5A DNA MER1_type -3 186 16 260 352 22 0 chr6 7403005 7403096 -175012146 - MIR SINE MIR -112 150 58 498 291 131 51 chr6 7404157 7404772 -175010470 - L2 LINE L2 -8 3305 2621 369 355 35 43 chr6 7404832 7405088 -175010154 - L1MC/D LINE L1 -2109 5699 5446 824 320 157 36 chr6 7405093 7405737 -175009505 + L3 LINE CR1 851 1572 -5 297 259 134 21 chr6 7406544 7406699 -175008543 + MIR SINE MIR 2 181 -27 549 198 0 0 chr6 7407220 7407326 -175007916 - AluJo/FRAM SINE Alu -2 310 205 448 118 0 0 chr6 7407325 7407393 -175007849 + AluS SINE Alu 227 294 -18 * 251 233 62 144 chr6 7408850 7408961 -175006281 + L2 LINE L2 3180 3278 -35 624 81 0 0 chr6 7408961 7409048 -175006194 + (TGGA)n Simple_repeat Simple_repeat 1 87 0 251 233 62 144 chr6 7409048 7409082 -175006160 + L2 LINE L2 3278 3313 0 211 286 165 30 chr6 7410664 7410797 -175004445 + MIR3 SINE MIR 24 174 -34 1952 133 3 16 chr6 7410807 7411123 -175004119 - AluSx SINE Alu 0 312 1 186 43 0 0 chr6 7412991 7413014 -175002228 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 1536 179 4 14 chr6 7413016 7413296 -175001946 - AluJb SINE Alu -35 277 1 608 258 47 39 chr6 7413296 7413529 -175001713 - MER33 DNA MER1_type -53 271 37 192 321 49 12 chr6 7413755 7413836 -175001406 - L2 LINE L2 -4 3268 3185 437 90 164 0 chr6 7464992 7465059 -174950183 + AluSc SINE Alu 217 294 -15 232 278 156 0 chr6 7465061 7465151 -174950091 + MIR SINE MIR 145 248 -14 2425 81 3 13 chr6 7465371 7465680 -174949562 - AluSx SINE Alu -6 306 1 889 174 19 0 chr6 7465743 7465898 -174949344 - FRAM SINE Alu -8 158 1 1251 149 0 26 chr6 7465906 7466138 -174949104 - AluSg/x SINE Alu 0 317 91 759 155 0 0 chr6 7466391 7466507 -174948735 + FLAM_C SINE Alu 1 116 -17 676 142 0 9 chr6 7467461 7467567 -174947675 - FLAM_C SINE Alu -38 105 1 22 0 0 0 chr6 7467596 7467618 -174947624 + AT_rich Low_complexity Low_complexity 1 22 0 1291 122 20 93 chr6 7467665 7467747 -174947495 - MER30 DNA MER1_type 0 230 144 2289 76 7 3 chr6 7467747 7468063 -174947179 + AluSx SINE Alu 1 312 0 1291 122 20 93 chr6 7468063 7468226 -174947016 - MER30 DNA MER1_type -86 144 3 766 115 26 0 chr6 7468795 7468908 -174946334 + AluSg/x SINE Alu 170 285 -25 2258 118 0 0 chr6 7469203 7469508 -174945734 - AluSx SINE Alu -7 305 1 462 203 13 26 chr6 7469544 7469697 -174945545 + CT-rich Low_complexity Low_complexity 3 153 0 770 148 0 16 chr6 7469718 7469840 -174945402 - FLAM_C SINE Alu -11 122 3 531 118 0 0 chr6 7469980 7470065 -174945177 + (TA)n Simple_repeat Simple_repeat 1 85 0 22 0 0 0 chr6 7470122 7470144 -174945098 + AT_rich Low_complexity Low_complexity 1 22 0 1536 166 88 3 chr6 7470162 7470446 -174944796 + AluJb SINE Alu 1 308 -4 315 292 84 52 chr6 7470450 7470796 -174944446 + L1M4 LINE L1 3286 3642 -2504 185 150 0 25 chr6 7470835 7470875 -174944367 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 1427 153 0 0 chr6 7471069 7471272 -174943970 + AluJb SINE Alu 105 307 -5 893 158 0 0 chr6 7471568 7471701 -174943541 - FLAM_C SINE Alu 0 133 1 402 157 253 0 chr6 7472240 7472323 -174942919 + AluY SINE Alu 2 105 -206 4369 141 16 18 chr6 7472531 7473296 -174941946 + L1MB3 LINE L1 5414 6176 -7 1818 122 4 0 chr6 7474120 7474366 -174940876 - AluSq SINE Alu -66 247 1 2023 118 0 17 chr6 7475217 7475549 -174939693 - AluSx SINE Alu 0 327 1 585 258 115 106 chr6 7475792 7476114 -174939128 + MLT1E1 LTR MaLR 194 518 -136 353 141 3 7 chr6 7476114 7476171 -174939071 + Alu SINE Alu 244 285 -17 2302 105 0 10 chr6 7476171 7476477 -174938765 + AluSx SINE Alu 1 303 -9 353 141 3 7 chr6 7476477 7476492 -174938750 + Alu SINE Alu 285 299 -3 841 143 0 0 chr6 7476492 7476618 -174938624 + FLAM_C SINE Alu 5 130 -3 716 228 34 0 chr6 7476650 7476799 -174938443 + MLT1E1 LTR MaLR 494 647 -7 483 281 89 49 chr6 7476816 7477102 -174938140 - L1ME LINE L1 -449 5672 5372 564 56 0 0 chr6 7477102 7477174 -174938068 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 483 281 89 49 chr6 7477174 7477197 -174938045 - L1ME LINE L1 -749 5372 5351 1445 131 106 17 chr6 7477359 7477458 -174937784 + AluJb SINE Alu 38 127 -185 2119 129 0 13 chr6 7477458 7477768 -174937474 + AluSx SINE Alu 1 306 -6 1445 131 106 17 chr6 7477768 7477905 -174937337 + AluJb SINE Alu 127 295 -17 1832 164 0 10 chr6 7478113 7478412 -174936830 - AluJb SINE Alu -16 296 1 1750 175 34 0 chr6 7479066 7479357 -174935885 + AluJb SINE Alu 3 303 -9 207 69 0 0 chr6 7479933 7479962 -174935280 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr6 7480077 7480097 -174935145 + (CA)n Simple_repeat Simple_repeat 2 21 0 2213 108 10 3 chr6 7480511 7480816 -174934426 + AluSx SINE Alu 1 307 -5 410 324 77 6 chr6 7481601 7481771 -174933471 + MIR SINE MIR 55 236 -26 207 352 46 19 chr6 7481867 7481975 -174933267 + L2 LINE L2 3185 3295 -18 428 127 13 13 chr6 7482135 7482206 -174933036 - Charlie1 DNA MER1_type 0 2761 2688 2358 95 3 0 chr6 7482206 7482511 -174932731 - AluSx SINE Alu -6 306 1 1266 177 72 16 chr6 7482585 7482834 -174932408 - AluJo SINE Alu -17 295 33 928 106 8 0 chr6 7483038 7483170 -174932072 - AluSg/x SINE Alu 0 312 180 208 303 34 51 chr6 7483343 7483577 -174931665 + L2 LINE L2 2810 3039 -233 2062 89 78 0 chr6 7484187 7484468 -174930774 + AluSp SINE Alu 1 303 -10 1631 119 4 0 chr6 7484468 7484693 -174930549 + AluSg/x SINE Alu 80 306 -4 2288 118 3 0 chr6 7484727 7485033 -174930209 + AluSx SINE Alu 2 308 -4 22 0 0 0 chr6 7485069 7485091 -174930151 + AT_rich Low_complexity Low_complexity 1 22 0 342 178 42 17 chr6 7485157 7485275 -174929967 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 371 74 49 0 chr6 7485285 7485366 -174929876 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 2302 96 0 0 chr6 7485942 7486233 -174929009 - AluY SINE Alu -20 291 1 302 296 152 8 chr6 7486272 7486404 -174928838 - MIR3 SINE MIR -28 180 30 736 121 129 0 chr6 7487073 7487189 -174928053 + FLAM_A SINE Alu 1 131 -2 491 129 35 0 chr6 7487246 7487331 -174927911 - MER2 DNA MER2_type -135 210 123 927 133 0 15 chr6 7487332 7487467 -174927775 + FLAM_C SINE Alu 1 133 0 726 212 8 0 chr6 7487513 7487645 -174927597 - MER2 DNA MER2_type -210 135 3 326 222 25 0 chr6 7487745 7487826 -174927416 - L1ME3A LINE L1 -9 6161 6079 401 202 103 21 chr6 7487849 7487992 -174927250 + MIR SINE MIR 45 201 -59 2354 63 0 11 chr6 7488060 7488346 -174926896 + AluY SINE Alu 2 284 -27 280 116 23 0 chr6 7488454 7488497 -174926745 - Alu SINE Alu -257 45 2 2217 120 7 3 chr6 7488508 7488817 -174926425 - AluSq SINE Alu -3 310 1 333 323 65 8 chr6 7489170 7489294 -174925948 + MIR3 SINE MIR 14 144 -64 2121 116 0 35 chr6 7489409 7489720 -174925522 + AluSx SINE Alu 4 303 -9 1427 145 33 21 chr6 7489818 7490060 -174925182 - L1PB4 LINE L1 0 6156 5912 21 0 0 0 chr6 7490067 7490088 -174925154 + AT_rich Low_complexity Low_complexity 1 21 0 1858 175 0 0 chr6 7490096 7490382 -174924860 + AluJo SINE Alu 6 291 -21 193 146 42 0 chr6 7490406 7490454 -174924788 + (TA)n Simple_repeat Simple_repeat 2 51 0 230 150 25 25 chr6 7490576 7490656 -174924586 + (TA)n Simple_repeat Simple_repeat 1 80 0 2192 107 10 3 chr6 7490681 7490980 -174924262 - AluSc SINE Alu -8 301 1 682 182 34 20 chr6 7491058 7491206 -174924036 - MLT1B LTR MaLR -46 344 195 287 312 0 0 chr6 7491354 7491431 -174923811 - MIR SINE MIR -184 78 2 1535 160 24 41 chr6 7492234 7492528 -174922714 - AluJb SINE Alu -12 300 12 2301 155 171 28 chr6 7492745 7493241 -174922001 + MLT1F1 LTR MaLR 1 567 0 200 349 48 0 chr6 7493257 7493340 -174921902 - L2 LINE L2 -50 3222 3136 309 272 83 71 chr6 7493414 7493583 -174921659 - L2 LINE L2 -182 3090 2920 284 274 18 53 chr6 7493644 7493757 -174921485 - L2 LINE L2 -497 2817 2709 383 318 134 17 chr6 7493786 7494195 -174921047 - L2 LINE L2 -705 2609 2153 203 289 52 31 chr6 7494302 7494399 -174920843 - L2 LINE L2 -1343 1971 1873 2274 84 0 3 chr6 7494423 7494709 -174920533 - AluY SINE Alu -16 295 11 216 189 0 0 chr6 7494883 7494920 -174920322 + GA-rich Low_complexity Low_complexity 2 38 0 629 174 41 8 chr6 7495789 7495910 -174919332 + FLAM_C SINE Alu 1 125 -8 44 63 0 0 chr6 7495910 7495989 -174919253 + AT_rich Low_complexity Low_complexity 1 79 0 185 353 17 17 chr6 7496115 7496174 -174919068 + MER5A DNA MER1_type 68 126 -63 2343 93 0 7 chr6 7496174 7496476 -174918766 - AluSc SINE Alu -9 300 1 185 353 17 17 chr6 7496476 7496535 -174918707 + MER5A DNA MER1_type 125 186 -3 636 138 0 28 chr6 7497594 7497703 -174917539 + AluSg/x SINE Alu 193 298 -12 513 102 4 0 chr6 7497705 7497783 -174917459 - L1MB2 LINE L1 -31 6137 6058 2176 114 0 0 chr6 7498051 7498341 -174916901 + AluSg SINE Alu 1 290 -20 326 154 0 0 chr6 7498341 7498393 -174916849 + Alu SINE Alu 1 52 -250 1055 211 30 35 chr6 7498981 7499087 -174916155 - MLT1C LTR MaLR -16 451 346 598 229 91 108 chr6 7499087 7499493 -174915749 - MER93a LTR ERV1 -3 399 1 1055 211 30 35 chr6 7499493 7499618 -174915624 - MLT1C LTR MaLR -121 346 221 1075 112 0 0 chr6 7499631 7499774 -174915468 - FLAM_C SINE Alu 0 143 1 1784 163 6 26 chr6 7499776 7500089 -174915153 - AluJb SINE Alu -5 307 1 1321 133 43 0 chr6 7500089 7500300 -174914942 - MLT1C LTR MaLR -233 234 15 198 392 8 0 chr6 7500560 7500685 -174914557 + MIR3 SINE MIR 30 155 -53 1564 162 0 58 chr6 7500882 7501012 -174914230 - AluJb SINE Alu -50 262 155 2276 93 3 44 chr6 7501012 7501333 -174913909 - AluSc SINE Alu -1 308 1 1564 162 0 58 chr6 7501333 7501480 -174913762 - AluJb SINE Alu -157 155 1 229 0 54 27 chr6 7503169 7503206 -174912036 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 970 149 0 7 chr6 7503210 7503358 -174911884 - AluJb SINE Alu -24 288 142 2463 80 0 10 chr6 7503730 7504042 -174911200 - AluY SINE Alu -1 310 2 1773 116 96 0 chr6 7505154 7505405 -174909837 + AluSx SINE Alu 6 280 -32 189 0 0 0 chr6 7505405 7505426 -174909816 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 571 120 33 0 chr6 7505426 7505518 -174909724 - MLT1B LTR MaLR -295 95 1 738 173 8 24 chr6 7506518 7506645 -174908597 - FLAM_A SINE Alu -8 125 1 1233 151 18 14 chr6 7506676 7506894 -174908348 - MER20 DNA MER1_type 0 219 1 1467 84 0 0 chr6 7507228 7507407 -174907835 - AluSg/x SINE Alu -7 305 127 432 294 51 25 chr6 7507482 7507717 -174907525 + MIR SINE MIR 20 260 -2 1019 159 53 39 chr6 7507916 7508123 -174907119 - L1PB4 LINE L1 0 6156 5947 222 125 89 0 chr6 7508847 7508903 -174906339 + (TTATA)n Simple_repeat Simple_repeat 5 65 0 371 74 49 0 chr6 7508913 7508994 -174906248 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 756 81 24 16 chr6 7509142 7509265 -174905977 - L1MB8 LINE L1 -9 6169 6046 894 209 0 0 chr6 7509280 7509433 -174905809 - FRAM SINE Alu -13 153 1 1314 121 4 61 chr6 7509437 7509668 -174905574 - AluSc SINE Alu -8 301 84 1983 116 56 3 chr6 7509668 7509953 -174905289 - AluSq SINE Alu -13 300 1 200 180 34 22 chr6 7510008 7510097 -174905145 + GA-rich Low_complexity Low_complexity 4 93 0 3985 138 14 2 chr6 7510112 7510735 -174904507 - L1MB7 LINE L1 -129 6055 5425 1788 183 3 7 chr6 7510847 7511153 -174904089 + AluJo SINE Alu 1 305 -7 2335 86 0 0 chr6 7512242 7512534 -174902708 + AluY SINE Alu 1 292 -19 2310 98 0 0 chr6 7512547 7512842 -174902400 + AluSx SINE Alu 3 297 -15 266 211 178 0 chr6 7513481 7513571 -174901671 + MIR SINE MIR 87 192 -70 2378 74 10 0 chr6 7513716 7514014 -174901228 + AluSp SINE Alu 1 301 -12 288 249 24 133 chr6 7514477 7514642 -174900600 + MIR3 SINE MIR 33 179 -29 305 367 114 29 chr6 7516413 7517009 -174898233 + L2 LINE L2 2258 2904 -410 2189 83 17 17 chr6 7518114 7518416 -174896826 - AluSq SINE Alu -7 306 5 655 166 0 103 chr6 7518449 7518594 -174896648 - FLAM_C SINE Alu -2 131 2 25 31 0 0 chr6 7518678 7518710 -174896532 + AT_rich Low_complexity Low_complexity 1 32 0 2093 124 0 0 chr6 7518833 7519132 -174896110 - AluSx SINE Alu -13 299 1 222 62 0 0 chr6 7519503 7519535 -174895707 + (T)n Simple_repeat Simple_repeat 1 32 0 595 201 18 174 chr6 7519635 7519859 -174895383 + MIR SINE MIR 48 236 -26 2138 116 6 61 chr6 7519959 7520305 -174894937 - MER7A DNA MER2_type 0 346 22 25 31 0 0 chr6 7520410 7520442 -174894800 + AT_rich Low_complexity Low_complexity 1 32 0 1915 120 0 3 chr6 7520587 7520900 -174894342 + AluSq SINE Alu 1 312 0 288 232 0 14 chr6 7521279 7521348 -174893894 + FLAM_A SINE Alu 66 133 0 270 81 0 0 chr6 7521832 7521869 -174893373 + (T)n Simple_repeat Simple_repeat 1 37 0 2158 92 3 3 chr6 7522104 7522397 -174892845 - AluSc SINE Alu -16 293 1 1004 103 0 0 chr6 7522397 7522533 -174892709 - AluSq/x SINE Alu -176 136 1 745 162 0 0 chr6 7522575 7522692 -174892550 + FLAM_A SINE Alu 1 117 -16 406 0 0 36 chr6 7522700 7522756 -174892486 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 482 210 259 19 chr6 7522756 7522913 -174892329 - MIR SINE MIR -5 257 62 263 289 44 44 chr6 7523254 7523389 -174891853 - MIR SINE MIR -25 237 103 668 110 70 0 chr6 7523504 7523604 -174891638 - AluSq/x SINE Alu -204 108 2 2457 162 18 16 chr6 7523680 7524130 -174891112 - L1MB3 LINE L1 0 6183 5733 293 240 10 39 chr6 7524130 7524234 -174891008 - L1ME4a LINE L1 -31 6090 5990 318 284 14 85 chr6 7524270 7524321 -174890921 - L1MB3 LINE L1 -429 5692 5639 848 219 0 0 chr6 7524321 7524490 -174890752 + L1PA16 LINE L1 5981 6149 -17 318 284 14 85 chr6 7524490 7524579 -174890663 - L1MB3 LINE L1 -482 5639 5562 739 187 0 8 chr6 7524754 7524888 -174890354 - FLAM_C SINE Alu 0 133 1 221 284 153 9 chr6 7525725 7525871 -174889371 - MIR SINE MIR -68 140 5 183 148 0 0 chr6 7525935 7525962 -174889280 + MIR SINE MIR 83 109 -99 1574 150 14 31 chr6 7527460 7527746 -174887496 + AluJo SINE Alu 1 281 -31 1590 174 9 40 chr6 7527747 7528068 -174887174 + AluJo SINE Alu 1 311 -1 2147 122 0 0 chr6 7528096 7528407 -174886835 + AluSx SINE Alu 1 311 -1 1513 140 17 0 chr6 7528407 7528643 -174886599 - L1MB2 LINE L1 -251 5920 5681 229 240 200 30 chr6 7528735 7528835 -174886407 - MIR3 SINE MIR -3 205 89 1350 133 195 8 chr6 7529996 7530252 -174884990 + AluSg1 SINE Alu 1 304 -5 1534 159 19 48 chr6 7530272 7530586 -174884656 + AluJb SINE Alu 6 310 -2 303 203 0 0 chr6 7530601 7530670 -174884572 + GA-rich Low_complexity Low_complexity 4 72 0 543 148 218 0 chr6 7530680 7530781 -174884461 + AluJb SINE Alu 2 124 -188 22 35 0 0 chr6 7530985 7531014 -174884228 + AT_rich Low_complexity Low_complexity 1 29 0 2043 124 7 3 chr6 7531386 7531685 -174883557 + AluSq SINE Alu 1 300 -13 1617 131 3 125 chr6 7532268 7532612 -174882630 + AluJo SINE Alu 1 302 0 21 0 0 0 chr6 7532612 7532633 -174882609 + AT_rich Low_complexity Low_complexity 1 21 0 671 188 8 16 chr6 7532949 7533196 -174882046 + AluJ SINE Alu 2 133 -169 386 338 33 7 chr6 7533330 7533481 -174881761 + L2 LINE L2 3147 3301 -12 329 315 62 15 chr6 7533531 7533661 -174881581 + L2 LINE L2 2910 3045 -227 2124 107 3 0 chr6 7533682 7533973 -174881269 + AluSg SINE Alu 1 292 -18 22419 99 17 13 chr6 7534111 7537348 -174877894 + L1PA6 LINE L1 11 3261 -2885 7199 50 6 2 chr6 7537348 7538738 -174876504 + L1PA6 LINE L1 4762 6154 0 217 331 123 13 chr6 7538916 7539070 -174876172 + L2 LINE L2 3102 3272 0 902 173 6 0 chr6 7539726 7539888 -174875354 + AluJ SINE Alu 140 302 -10 2126 109 0 26 chr6 7539914 7540226 -174875016 + AluSq SINE Alu 1 304 -9 255 61 0 0 chr6 7540958 7540991 -174874251 + (TCC)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr6 7541444 7541494 -174873748 + GC_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr6 7541725 7541760 -174873482 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 7541926 7541948 -174873294 + GC_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr6 7543121 7543155 -174872087 + (TG)n Simple_repeat Simple_repeat 2 35 0 231 244 0 0 chr6 7543798 7543843 -174871399 - L2 LINE L2 -10 3262 3218 21 0 0 0 chr6 7544779 7544800 -174870442 + AT_rich Low_complexity Low_complexity 1 21 0 184 194 0 0 chr6 7546523 7546554 -174868688 + MIR SINE MIR 159 189 -73 1217 134 11 0 chr6 7546792 7546979 -174868263 - AluSg/x SINE Alu -29 283 95 338 253 48 0 chr6 7547082 7547165 -174868077 - L1MC4 LINE L1 -1342 6700 6614 317 348 0 0 chr6 7547087 7547176 -174868066 + L1MC4 LINE L1 6614 6702 -1340 * 1663 155 7 4 chr6 7548320 7548598 -174866644 + AluJo SINE Alu 12 290 -22 24 0 0 0 chr6 7548598 7548622 -174866620 + AT_rich Low_complexity Low_complexity 1 24 0 3144 65 5 0 chr6 7548907 7549308 -174865934 - L1PA8A LINE L1 -27 6104 5702 22 0 0 0 chr6 7549574 7549596 -174865646 + AT_rich Low_complexity Low_complexity 1 22 0 2016 114 7 0 chr6 7549834 7550133 -174865109 + AluY SINE Alu 1 301 -10 2270 63 0 26 chr6 7550737 7551039 -174864203 + AluY SINE Alu 1 294 -17 197 302 143 0 chr6 7551473 7551536 -174863706 - L2 LINE L2 -3 3310 3239 54 73 0 0 chr6 7551602 7551712 -174863530 + AT_rich Low_complexity Low_complexity 1 110 0 1607 159 4 7 chr6 7551733 7552009 -174863233 - AluJo SINE Alu -17 295 21 2254 107 3 0 chr6 7552067 7552377 -174862865 - AluSx SINE Alu -1 311 1 608 202 0 0 chr6 7552744 7552843 -174862399 - AluJ/FLAM SINE Alu -212 100 2 659 237 31 36 chr6 7553162 7553378 -174861864 + MIR SINE MIR 46 261 -1 1964 118 37 0 chr6 7553383 7553680 -174861562 - AluSx SINE Alu -4 308 1 610 330 172 12 chr6 7553721 7554309 -174860933 + L2 LINE L2 1965 2646 -668 847 122 0 0 chr6 7554736 7554851 -174860391 + AluSq/x SINE Alu 10 124 -189 2958 165 32 16 chr6 7554852 7555359 -174859883 + L1MB8 LINE L1 5308 5826 -352 1888 102 102 0 chr6 7555359 7555642 -174859600 + AluSx SINE Alu 1 312 0 2958 165 32 16 chr6 7555642 7555687 -174859555 + L1MB8 LINE L1 5826 5869 -309 745 271 133 17 chr6 7555801 7556103 -174859139 + MLT1I LTR MaLR 72 408 -1 346 322 29 47 chr6 7556105 7556276 -174858966 - MIR SINE MIR -16 246 79 362 237 0 13 chr6 7556485 7556561 -174858681 + Tigger5 DNA MER2_type 1 75 -2248 258 192 19 0 chr6 7556578 7556630 -174858612 - Tigger5 DNA MER2_type -20 2303 2251 1795 155 14 3 chr6 7556644 7556941 -174858301 + AluJb SINE Alu 2 301 -11 426 167 0 0 chr6 7556943 7557009 -174858233 + Tigger5 DNA MER2_type 2258 2323 0 255 240 154 23 chr6 7557165 7557315 -174857927 + MIR SINE MIR 23 201 -61 1400 177 108 63 chr6 7557315 7557694 -174857548 + MSTD LTR MaLR 1 396 0 255 240 154 23 chr6 7557694 7557713 -174857529 + MIR SINE MIR 201 216 -46 270 249 13 81 chr6 7558345 7558466 -174856776 - MIR SINE MIR -84 124 20 1411 227 31 68 chr6 7558475 7558785 -174856457 + MER58B DNA MER1_type 3 300 -2120 849 158 0 23 chr6 7558785 7558918 -174856324 - FLAM_C SINE Alu -3 130 1 1411 227 31 68 chr6 7558918 7558959 -174856283 + MER58B DNA MER1_type 300 341 0 232 267 0 17 chr6 7558989 7559049 -174856193 - MIR SINE MIR -122 140 82 485 266 5 65 chr6 7559839 7560023 -174855219 + L1MC4a LINE L1 7636 7808 0 2001 139 0 0 chr6 7560024 7560326 -174854916 + AluSx SINE Alu 1 302 -10 850 225 5 27 chr6 7560330 7560517 -174854725 + AluJb SINE Alu 130 312 0 411 169 13 0 chr6 7560522 7560599 -174854643 + MER116 DNA Mariner 2 79 -1 2207 82 0 0 chr6 7561216 7561496 -174853746 + AluSp SINE Alu 1 280 -33 360 94 0 0 chr6 7561502 7561555 -174853687 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 207 182 0 0 chr6 7563410 7563443 -174851799 + polypyrimidine Low_complexity Low_complexity 1 33 0 189 107 0 0 chr6 7563556 7563584 -174851658 + (CCCCCG)n Simple_repeat Simple_repeat 1 28 0 34 55 0 0 chr6 7564126 7564181 -174851061 + GC_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr6 7564305 7564326 -174850916 + GC_rich Low_complexity Low_complexity 1 21 0 355 134 55 43 chr6 7565604 7565729 -174849513 + HsTC2 DNA Tc2 9 1854 -44 342 200 19 150 chr6 7565731 7565891 -174849351 + MER103 DNA DNA 17 155 -11 2329 94 0 3 chr6 7566406 7566703 -174848539 + AluSp SINE Alu 1 296 -17 1703 179 10 23 chr6 7566754 7567062 -174848180 + AluJo SINE Alu 1 304 -8 189 254 14 84 chr6 7567188 7567259 -174847983 - MIR SINE MIR -56 206 141 279 399 43 6 chr6 7567275 7567438 -174847804 - L2 LINE L2 0 3272 3104 382 335 37 12 chr6 7567613 7567774 -174847468 - MIR3 SINE MIR -23 185 21 723 189 115 80 chr6 7568047 7568359 -174846883 + L1MC5 LINE L1 7609 7931 -30 1176 129 0 12 chr6 7569290 7569460 -174845782 - AluSg/x SINE Alu -24 288 121 324 70 0 0 chr6 7569572 7569615 -174845627 + (TC)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr6 7570009 7570032 -174845210 + (T)n Simple_repeat Simple_repeat 1 23 0 539 238 66 13 chr6 7570257 7570408 -174844834 - MIR SINE MIR -76 186 28 2292 93 3 7 chr6 7571057 7571358 -174843884 - AluSx SINE Alu -12 300 1 871 104 0 0 chr6 7571647 7571762 -174843480 - FLAM_C SINE Alu -15 118 4 2081 82 25 11 chr6 7572155 7572436 -174842806 - AluSx SINE Alu -26 286 2 195 69 0 0 chr6 7572491 7572520 -174842722 + (TG)n Simple_repeat Simple_repeat 2 30 0 215 272 88 40 chr6 7573520 7573645 -174841597 + MIR SINE MIR 17 147 -61 1809 149 0 24 chr6 7574770 7575081 -174840161 + AluJo SINE Alu 1 304 0 2097 92 22 0 chr6 7575081 7575381 -174839861 + AluSc SINE Alu 1 306 0 274 212 200 0 chr6 7575503 7575588 -174839654 + U13 snRNA snRNA 3 104 0 201 39 0 0 chr6 7575591 7575617 -174839625 + (CA)n Simple_repeat Simple_repeat 2 27 0 372 278 132 0 chr6 7575726 7575870 -174839372 - MIR SINE MIR -25 237 75 1606 109 0 0 chr6 7576278 7576479 -174838763 + AluSg SINE Alu 1 201 -109 186 346 0 25 chr6 7576967 7577048 -174838194 - L3 LINE CR1 -89 1488 1410 2012 150 0 10 chr6 7577568 7577875 -174837367 - AluJb SINE Alu -8 304 1 2064 124 3 17 chr6 7578472 7578771 -174836471 - AluSx SINE Alu -17 295 1 2553 60 0 3 chr6 7578920 7579221 -174836021 - AluY SINE Alu -11 300 1 514 228 25 51 chr6 7580011 7580169 -174835073 - MIR SINE MIR -1 261 108 2407 64 0 0 chr6 7581294 7581611 -174833631 - AluSg SINE Alu 0 317 1 1687 123 78 0 chr6 7581631 7581874 -174833368 - AluSq SINE Alu -45 268 7 331 224 84 28 chr6 7583779 7583886 -174831356 - MIR SINE MIR -76 186 74 2281 103 0 0 chr6 7583998 7584289 -174830953 + AluSx SINE Alu 1 291 -21 2204 128 0 0 chr6 7585928 7586226 -174829016 - AluSg SINE Alu -12 298 1 2419 54 40 0 chr6 7586241 7586537 -174828705 - AluY SINE Alu -3 308 1 306 277 67 8 chr6 7586572 7586691 -174828551 - MIR SINE MIR -32 230 105 508 227 74 23 chr6 7586749 7586925 -174828317 - MIR SINE MIR -62 200 16 518 134 12 0 chr6 7586990 7587072 -174828170 - AluJ/FLAM SINE Alu -228 84 2 1649 167 20 33 chr6 7587175 7587363 -174827879 - AluSx SINE Alu -16 296 112 2309 112 0 0 chr6 7587363 7587666 -174827576 - AluSq SINE Alu -10 303 1 1649 167 20 33 chr6 7587666 7587777 -174827465 - AluSx SINE Alu -200 112 1 452 188 0 0 chr6 7587798 7587883 -174827359 + L2 LINE L2 3229 3313 0 180 296 62 0 chr6 7587881 7587962 -174827280 - MIR SINE MIR -95 167 82 * 253 216 9 117 chr6 7588411 7588522 -174826720 - MIR3 SINE MIR -6 202 104 671 197 0 0 chr6 7588752 7588869 -174826373 + FLAM_A SINE Alu 1 117 -16 189 107 0 0 chr6 7588869 7588897 -174826345 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 261 290 42 53 chr6 7589083 7589345 -174825897 - L1ME4a LINE L1 -65 6056 5798 769 175 0 22 chr6 7591749 7591886 -174823356 - FLAM_C SINE Alu -8 135 2 25 31 0 0 chr6 7596580 7596612 -174818630 + GC_rich Low_complexity Low_complexity 1 32 0 2344 65 0 20 chr6 7597305 7597598 -174817644 + AluSq SINE Alu 14 300 -13 246 62 0 0 chr6 7599203 7599235 -174816007 + (T)n Simple_repeat Simple_repeat 1 32 0 680 144 79 0 chr6 7599576 7599715 -174815527 + L1MA7 LINE L1 6133 6282 -9 189 107 0 0 chr6 7601335 7601363 -174813879 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 71 0 0 chr6 7601469 7601497 -174813745 + (CA)n Simple_repeat Simple_repeat 2 29 0 405 231 28 0 chr6 7603757 7603865 -174811377 + L1MD2 LINE L1 6249 6359 0 2306 106 0 0 chr6 7604300 7604592 -174810650 - AluSx SINE Alu -20 292 1 212 175 0 0 chr6 7604835 7604875 -174810367 - L3b LINE CR1 -3 1580 1541 2408 76 0 7 chr6 7605056 7605358 -174809884 - AluSx SINE Alu -12 300 1 189 0 0 0 chr6 7608475 7608496 -174806746 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 7608602 7608623 -174806619 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chr6 7608783 7608828 -174806414 + (CA)n Simple_repeat Simple_repeat 2 46 0 481 274 37 93 chr6 7609106 7609460 -174805782 - MLT1I LTR MaLR -6 403 70 1080 138 69 0 chr6 7609596 7609770 -174805472 + MER5A DNA MER1_type 4 189 0 644 231 62 53 chr6 7609919 7610144 -174805098 - MIR SINE MIR -30 232 6 2170 119 0 13 chr6 7610683 7610994 -174804248 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 7611163 7611185 -174804057 + AT_rich Low_complexity Low_complexity 1 22 0 2071 125 0 7 chr6 7612533 7612830 -174802412 + AluSx SINE Alu 1 295 -17 1594 155 52 38 chr6 7612871 7613161 -174802081 + AluJb SINE Alu 1 294 -18 213 267 0 0 chr6 7615396 7615441 -174799801 - L2 LINE L2 -27 3286 3242 409 160 0 80 chr6 7615492 7615592 -174799650 - AluJ/FRAM SINE Alu -3 309 218 377 104 5 19 chr6 7615608 7615667 -174799575 - FLAM SINE Alu -11 122 71 21 71 0 0 chr6 7615688 7615730 -174799512 + AT_rich Low_complexity Low_complexity 1 42 0 215 254 32 16 chr6 7665968 7666031 -174749211 + CT-rich Low_complexity Low_complexity 5 68 0 2295 110 0 3 chr6 7670554 7670854 -174744388 + AluSx SINE Alu 1 299 -13 752 144 0 0 chr6 7670865 7670983 -174744259 + FLAM_C SINE Alu 1 118 -15 2387 84 7 0 chr6 7671688 7671985 -174743257 + AluSq SINE Alu 1 299 -14 222 277 15 15 chr6 7674053 7674118 -174741124 + MIR SINE MIR 111 175 -87 381 22 0 0 chr6 7675633 7675679 -174739563 + (GA)n Simple_repeat Simple_repeat 1 46 0 282 29 0 0 chr6 7676365 7676400 -174738842 + (TTA)n Simple_repeat Simple_repeat 1 35 0 318 153 0 0 chr6 7677542 7677601 -174737641 + (TTA)n Simple_repeat Simple_repeat 2 60 0 237 65 0 0 chr6 7678056 7678087 -174737155 + (T)n Simple_repeat Simple_repeat 1 31 0 1657 175 0 15 chr6 7678721 7678995 -174736247 + AluJo SINE Alu 9 278 -34 2393 82 3 0 chr6 7679453 7679744 -174735498 + AluY SINE Alu 1 292 -19 2215 93 17 10 chr6 7679749 7680051 -174735191 + AluSx SINE Alu 1 304 -8 416 274 117 11 chr6 7680378 7680557 -174734685 + MIR SINE MIR 13 210 -52 302 172 17 0 chr6 7680972 7681030 -174734212 + MER5A DNA MER1_type 9 67 -122 793 185 53 0 chr6 7681045 7681196 -174734046 + FRAM SINE Alu 2 160 -6 324 179 328 22 chr6 7682607 7682741 -174732501 - MLT1G LTR MaLR 0 590 416 273 296 49 45 chr6 7682806 7682846 -174732396 + MER5A DNA MER1_type 29 67 -122 2325 114 0 0 chr6 7682846 7683145 -174732097 + AluSq SINE Alu 1 299 -14 273 296 49 45 chr6 7683145 7683254 -174731988 + MER5A DNA MER1_type 67 186 -3 1771 162 4 22 chr6 7683670 7683948 -174731294 - AluSx SINE Alu -35 277 5 2030 129 13 13 chr6 7683960 7684271 -174730971 - AluJb SINE Alu -1 311 1 796 239 112 15 chr6 7684390 7684658 -174730584 - MER45C DNA AcHobo -659 294 1 195 100 0 0 chr6 7685485 7685515 -174729727 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 791 169 15 0 chr6 7686324 7686454 -174728788 + FLAM_A SINE Alu 1 132 -1 617 210 0 8 chr6 7686736 7686855 -174728387 + FLAM_C SINE Alu 2 119 -24 180 0 0 0 chr6 7686856 7686876 -174728366 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2255 109 0 3 chr6 7689221 7689514 -174725728 - AluSq SINE Alu -21 292 1 2285 83 43 0 chr6 7690040 7690340 -174724902 - AluSp SINE Alu 0 313 1 188 67 33 0 chr6 7690351 7690381 -174724861 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2448 99 0 3 chr6 7690385 7690699 -174724543 - AluSq SINE Alu 0 313 1 1203 215 115 6 chr6 7691273 7691603 -174723639 + MLT1B LTR MaLR 9 374 -16 2148 139 0 0 chr6 7691939 7692242 -174723000 - AluSx SINE Alu -7 305 3 183 200 22 22 chr6 7692583 7692628 -174722614 + L3 LINE CR1 1514 1558 -19 866 228 122 4 chr6 7692711 7692948 -174722294 + LTR41 LTR ERVL 1 265 -508 512 90 0 26 chr6 7693198 7693276 -174721966 - Alu SINE Alu -9 302 227 365 229 57 57 chr6 7693277 7693417 -174721825 + LTR41 LTR ERVL 620 759 -14 578 243 77 0 chr6 7694090 7694259 -174720983 + MER5A DNA MER1_type 7 188 -1 206 244 13 39 chr6 7694372 7694450 -174720792 - MER5A DNA MER1_type -26 163 88 216 278 0 0 chr6 7694892 7694946 -174720296 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 333 242 125 31 chr6 7696205 7696333 -174718909 - L2 LINE L2 -1 3312 3173 1874 246 79 35 chr6 7696483 7696926 -174718316 + L1MC4 LINE L1 7348 7829 -213 2432 73 17 0 chr6 7696926 7697226 -174718016 + AluSp SINE Alu 1 305 -8 1874 246 79 35 chr6 7697226 7697431 -174717811 + L1MC4 LINE L1 7829 8024 -18 209 355 35 23 chr6 7697590 7697762 -174717480 - L2 LINE L2 -541 2773 2600 2352 103 0 3 chr6 7697969 7698270 -174716972 + AluSp SINE Alu 1 300 -13 326 318 162 0 chr6 7698377 7698531 -174716711 + MIR SINE MIR 33 211 -51 203 273 91 30 chr6 7700559 7700658 -174714584 - MER5A DNA MER1_type -34 155 51 657 0 80 0 chr6 7700893 7701006 -174714236 + (TA)n Simple_repeat Simple_repeat 2 123 0 2285 82 21 0 chr6 7701006 7701288 -174713954 - AluSg SINE Alu -22 288 1 506 284 231 33 chr6 7701336 7701635 -174713607 + L3 LINE CR1 1207 1564 -13 338 309 87 0 chr6 7701888 7702014 -174713228 - MIR SINE MIR -108 154 18 918 101 0 81 chr6 7702025 7702174 -174713068 - AluJo SINE Alu -175 137 1 1768 149 0 30 chr6 7702875 7703170 -174712072 + AluSx SINE Alu 3 288 -24 2525 63 0 0 chr6 7703180 7703482 -174711760 + AluY SINE Alu 1 302 -9 1166 118 0 0 chr6 7703482 7703665 -174711577 + AluSg/x SINE Alu 134 316 0 701 128 9 0 chr6 7703731 7703840 -174711402 - FLAM_C SINE Alu -32 111 2 2251 137 0 0 chr6 7703853 7704160 -174711082 - AluSx SINE Alu -5 307 1 395 249 171 8 chr6 7704626 7704794 -174710448 + MIR SINE MIR 21 213 -49 196 286 143 51 chr6 7704769 7704867 -174710375 - L2 LINE L2 -13 3300 3194 * 288 0 0 0 chr6 7704905 7704937 -174710305 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr6 7704936 7704965 -174710277 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 2222 89 11 7 chr6 7704992 7705273 -174709969 - AluSx SINE Alu -30 282 1 2578 63 0 0 chr6 7705806 7706108 -174709134 + AluY SINE Alu 1 302 -9 2282 110 3 0 chr6 7706121 7706420 -174708822 + AluSx SINE Alu 1 300 -12 2267 92 35 0 chr6 7707283 7707565 -174707677 - AluSg SINE Alu -18 292 1 22 0 0 0 chr6 7709614 7709636 -174705606 + AT_rich Low_complexity Low_complexity 1 22 0 2185 103 7 7 chr6 7709666 7709822 -174705420 - AluSx SINE Alu -21 291 133 2319 117 0 0 chr6 7709822 7710122 -174705120 - AluSx SINE Alu -12 300 1 2185 103 7 7 chr6 7710122 7710256 -174704986 - AluSx SINE Alu -178 134 1 234 212 384 13 chr6 7711128 7711279 -174703963 - MIR SINE MIR -18 244 38 1998 146 6 16 chr6 7711969 7712284 -174702958 + AluSx SINE Alu 1 312 0 252 329 95 25 chr6 7712590 7712748 -174702494 + MIR SINE MIR 82 250 -12 2184 90 10 29 chr6 7713203 7713514 -174701728 + AluSx SINE Alu 1 305 -7 1038 128 60 0 chr6 7717475 7717624 -174697618 - AluSg/x SINE Alu -18 292 135 2103 125 3 23 chr6 7717687 7717990 -174697252 + AluSx SINE Alu 1 297 -15 2043 140 14 3 chr6 7718365 7718658 -174696584 + AluJb SINE Alu 1 296 -16 291 324 170 32 chr6 7718670 7719112 -174696130 + L2 LINE L2 2196 2698 -616 749 194 0 8 chr6 7719126 7719260 -174695982 - FLAM_A SINE Alu 0 133 1 549 241 30 60 chr6 7719582 7719748 -174695494 + MER8 DNA MER2_type 1 161 -78 22 35 0 0 chr6 7719749 7719778 -174695464 + AT_rich Low_complexity Low_complexity 1 29 0 1431 108 19 0 chr6 7719781 7719994 -174695248 - L1PB2 LINE L1 -5 6146 5930 1459 163 106 4 chr6 7720025 7720289 -174694953 - AluJb SINE Alu -21 291 1 366 134 15 30 chr6 7720357 7720424 -174694818 - Tigger2 DNA MER2_type -2651 67 2 359 349 11 37 chr6 7720662 7720851 -174694391 + L1MC4a LINE L1 5682 5865 -1943 2212 88 0 11 chr6 7720981 7721295 -174693947 + AluSx SINE Alu 1 311 0 695 183 9 0 chr6 7722128 7722243 -174692999 - FLAM_A SINE Alu -17 116 1 345 264 0 58 chr6 7723221 7723342 -174691900 + G-rich Low_complexity Low_complexity 2 115 0 1854 166 13 0 chr6 7723514 7723815 -174691427 + AluJb SINE Alu 1 305 -7 1777 180 3 10 chr6 7724019 7724319 -174690923 + AluJo SINE Alu 1 298 -14 609 183 8 32 chr6 7725601 7725727 -174689515 + FLAM_A SINE Alu 1 123 -10 1961 118 38 3 chr6 7725993 7726280 -174688962 + AluSp SINE Alu 2 298 -15 240 333 61 25 chr6 7726700 7726898 -174688344 + L3b LINE CR1 1266 1470 -113 2370 98 0 0 chr6 7727221 7727517 -174687725 - AluSx SINE Alu -15 297 2 323 313 46 30 chr6 7728210 7728341 -174686901 - MER117 DNA MER1_type -57 140 8 2233 111 7 0 chr6 7729059 7729357 -174685885 + AluSc SINE Alu 1 300 -9 2352 84 7 13 chr6 7729432 7729740 -174685502 + AluSg SINE Alu 1 306 -4 767 142 0 0 chr6 7729792 7729912 -174685330 + AluSg/x SINE Alu 173 292 -20 1823 107 103 4 chr6 7730284 7730555 -174684687 + AluSx SINE Alu 1 298 -14 263 308 55 0 chr6 7730711 7730802 -174684440 - MER5A DNA MER1_type -84 105 10 696 204 27 34 chr6 7730819 7730966 -174684276 - MER58B DNA MER1_type 0 341 196 265 233 167 0 chr6 7731154 7731244 -174683998 + L1MB7 LINE L1 6079 6183 -1 225 215 77 0 chr6 7732224 7732289 -174682953 - L2 LINE L2 -1757 1557 1488 2278 75 0 52 chr6 7732711 7733018 -174682224 - AluY SINE Alu -20 291 1 2402 53 0 4 chr6 7733210 7733491 -174681751 + AluY SINE Alu 1 280 -31 1598 155 62 0 chr6 7734126 7734384 -174680858 - AluJo SINE Alu -21 291 18 218 218 95 129 chr6 7735250 7735397 -174679845 + L2 LINE L2 3136 3277 -36 1938 137 0 23 chr6 7735748 7736047 -174679195 + AluJo SINE Alu 1 292 -20 2646 94 16 11 chr6 7736076 7736449 -174678793 + THE1C LTR MaLR 1 375 0 966 174 0 18 chr6 7736800 7736967 -174678275 - FRAM SINE Alu -2 164 1 2159 131 3 0 chr6 7737205 7737511 -174677731 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr6 7738242 7738272 -174676970 + AT_rich Low_complexity Low_complexity 1 30 0 2187 104 0 3 chr6 7740245 7740533 -174674709 - AluSx SINE Alu -25 287 1 494 256 128 10 chr6 7740784 7740979 -174674263 - MIR SINE MIR -24 238 21 2182 91 144 6 chr6 7741276 7741617 -174673625 - pTR5 LTR ERV1 -2046 392 5 1209 181 19 39 chr6 7741614 7742180 -174673062 + pTR5 LTR ERV1 743 1346 -1092 * 2537 185 209 41 chr6 7742193 7742897 -174672345 + LTR12 LTR ERV1 4 825 -1 3917 152 190 40 chr6 7742897 7743856 -174671386 - pTR5 LTR ERV1 -404 1756 31 2231 107 0 17 chr6 7744972 7745270 -174669972 - AluSx SINE Alu -19 293 1 458 268 159 22 chr6 7745271 7745547 -174669695 + L2 LINE L2 2999 3312 -1 204 40 0 0 chr6 7745709 7745734 -174669508 + (A)n Simple_repeat Simple_repeat 1 25 0 615 308 147 22 chr6 7745945 7745993 -174669249 + L2 LINE L2 1445 1486 -1828 2056 123 17 3 chr6 7745993 7746286 -174668956 - AluJo SINE Alu -5 307 11 615 308 147 22 chr6 7746286 7746653 -174668589 + L2 LINE L2 1486 1912 -1402 807 273 73 57 chr6 7746770 7746794 -174668448 + HERV16 LTR ERVL 1165 1187 -3809 1067 220 125 32 chr6 7746794 7747009 -174668233 - MER2 DNA MER2_type -2 342 88 2424 68 0 0 chr6 7747009 7747301 -174667941 - AluY SINE Alu -19 292 1 1067 220 125 32 chr6 7747301 7747398 -174667844 - MER2 DNA MER2_type -256 88 1 807 273 73 57 chr6 7747398 7747814 -174667428 + HERV16 LTR ERVL 1187 1595 -3401 2453 92 0 0 chr6 7747814 7748120 -174667122 + AluSc SINE Alu 1 306 -3 807 273 73 57 chr6 7748120 7748173 -174667069 + HERV16 LTR ERVL 1595 1646 -3350 1058 171 89 131 chr6 7748173 7748336 -174666906 + MLT1A1 LTR MaLR 1 169 -196 2205 135 0 0 chr6 7748336 7748640 -174666602 - AluSx SINE Alu -8 304 1 1058 171 89 131 chr6 7748640 7748786 -174666456 + MLT1A1 LTR MaLR 169 294 -71 2441 82 0 0 chr6 7748786 7749089 -174666153 - AluSc SINE Alu -6 303 1 1058 171 89 131 chr6 7749089 7749159 -174666083 + MLT1A1 LTR MaLR 294 365 0 807 273 73 57 chr6 7749159 7749259 -174665983 + HERV16 LTR ERVL 1646 1833 -3163 353 270 43 26 chr6 7749368 7749483 -174665759 + HERV16 LTR ERVL 2334 2450 -2546 597 229 0 0 chr6 7749636 7749767 -174665475 + L1MB7 LINE L1 6039 6169 -15 181 231 116 33 chr6 7751412 7751533 -174663709 + L2 LINE L2 1554 1684 -1630 350 57 19 0 chr6 7751862 7751915 -174663327 + (TA)n Simple_repeat Simple_repeat 1 54 0 2266 111 0 13 chr6 7751916 7752222 -174663020 - AluSx SINE Alu -10 302 1 651 136 34 25 chr6 7752443 7752561 -174662681 - AluJo SINE Alu -18 294 176 438 171 48 19 chr6 7752587 7752692 -174662550 - AluJo SINE Alu -118 194 87 2508 65 0 7 chr6 7752693 7753000 -174662242 - AluY SINE Alu -6 305 1 2012 127 0 0 chr6 7753629 7753905 -174661337 - AluSx SINE Alu -13 299 24 647 143 107 0 chr6 7753905 7754017 -174661225 - AluSq/x SINE Alu -187 125 2 2340 75 4 0 chr6 7754224 7754505 -174660737 + AluSp SINE Alu 1 282 -31 270 0 0 0 chr6 7754508 7754538 -174660704 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1961 155 6 3 chr6 7755136 7755449 -174659793 + L1MA5 LINE L1 5950 6266 -34 414 0 0 0 chr6 7755449 7755495 -174659747 + (TG)n Simple_repeat Simple_repeat 2 47 0 2226 114 0 3 chr6 7755510 7755808 -174659434 - AluSx SINE Alu -15 297 1 233 152 43 0 chr6 7755808 7755854 -174659388 + L1MA5 LINE L1 6253 6300 0 659 345 26 7 chr6 7755916 7756220 -174659022 - L2 LINE L2 -452 2862 2553 2061 144 3 0 chr6 7756681 7756987 -174658255 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr6 7757489 7757517 -174657725 + AT_rich Low_complexity Low_complexity 1 28 0 2410 104 0 0 chr6 7759517 7759826 -174655416 - AluSq SINE Alu -4 309 1 297 51 0 0 chr6 7760214 7760253 -174654989 + (TA)n Simple_repeat Simple_repeat 1 39 0 2384 79 3 0 chr6 7760253 7760543 -174654699 - AluSx SINE Alu -21 291 1 21 0 0 0 chr6 7760565 7760586 -174654656 + AT_rich Low_complexity Low_complexity 1 21 0 2083 142 10 0 chr6 7761022 7761331 -174653911 + AluJb SINE Alu 1 312 0 1827 193 86 29 chr6 7761438 7761916 -174653326 - MLT1D LTR MaLR 0 505 1 694 194 49 170 chr6 7761954 7762173 -174653069 - MER102b DNA MER1_type -1087 341 179 1786 161 18 7 chr6 7762173 7762452 -174652790 - AluJo SINE Alu -30 282 1 694 194 49 170 chr6 7762452 7762604 -174652638 - MER102b DNA MER1_type -1249 179 10 4902 207 98 16 chr6 7763051 7763083 -174652159 - L1MC/D LINE L1 -758 5388 5360 1998 162 0 0 chr6 7763083 7763385 -174651857 - AluSx SINE Alu -10 302 1 4902 207 98 16 chr6 7763385 7763616 -174651626 - L1MC/D LINE L1 -786 5360 5149 2379 84 7 19 chr6 7763616 7763925 -174651317 + AluSg SINE Alu 1 305 -5 4902 207 98 16 chr6 7763925 7765126 -174650116 - L1MC/D LINE L1 -997 5149 3843 322 173 39 0 chr6 7765154 7765206 -174650036 - MLT1D LTR MaLR -418 87 34 647 92 11 0 chr6 7765235 7765346 -174649896 - L1PB1 LINE L1 -100 6051 5940 5430 91 8 2 chr6 7766174 7767016 -174648226 - L1PB1 LINE L1 -178 5973 5128 1225 219 0 7 chr6 7769247 7769535 -174645707 - L1PB1 LINE L1 -1018 5128 4843 1701 97 0 9 chr6 7769566 7769793 -174645449 + AluSg/x SINE Alu 85 309 -1 4389 156 137 49 chr6 7770600 7771947 -174643295 + pTR5 LTR ERV1 730 2328 -110 191 264 84 78 chr6 7771947 7772114 -174643128 - L2 LINE L2 -482 2832 2665 2133 106 14 7 chr6 7772221 7772513 -174642729 + AluY SINE Alu 1 294 -17 468 88 15 0 chr6 7772662 7772730 -174642512 - MER41B LTR ERV1 -86 549 481 1854 152 21 0 chr6 7772848 7773137 -174642105 + AluJo SINE Alu 1 295 -17 1828 166 0 34 chr6 7773140 7773460 -174641782 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 7773609 7773638 -174641604 + AT_rich Low_complexity Low_complexity 1 29 0 13333 186 26 33 chr6 7773652 7776226 -174639016 + L1PB1 LINE L1 6 2596 -4300 2154 125 6 3 chr6 7776226 7776538 -174638704 + AluSq SINE Alu 1 313 0 13333 186 26 33 chr6 7776538 7778094 -174637148 + L1PB1 LINE L1 2596 4161 -2735 209 81 0 27 chr6 7778094 7778131 -174637111 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 13333 186 26 33 chr6 7778131 7780272 -174634970 + L1PB1 LINE L1 4161 6511 -385 414 0 0 0 chr6 7780272 7780318 -174634924 + (CA)n Simple_repeat Simple_repeat 2 47 0 13333 186 26 33 chr6 7780318 7780702 -174634540 + L1PB1 LINE L1 6511 6896 0 32 26 0 0 chr6 7780737 7780776 -174634466 + AT_rich Low_complexity Low_complexity 1 39 0 1668 174 24 7 chr6 7782295 7782593 -174632649 + AluJo SINE Alu 1 303 -9 2256 96 13 3 chr6 7783371 7783673 -174631569 - AluSx SINE Alu -7 305 1 244 257 11 140 chr6 7784275 7784360 -174630882 - L1MA10 LINE L1 -4 6330 6236 1553 129 0 0 chr6 7784360 7784584 -174630658 - AluSg/x SINE Alu -3 309 86 244 257 11 140 chr6 7784584 7784603 -174630639 - L1MA10 LINE L1 -98 6236 6216 396 0 0 0 chr6 7784603 7784647 -174630595 + (TA)n Simple_repeat Simple_repeat 2 45 0 2616 182 29 76 chr6 7784655 7785134 -174630108 - L1ME1 LINE L1 -92 6074 5574 1272 167 114 43 chr6 7785134 7785415 -174629827 + AluJo SINE Alu 1 301 -11 2616 182 29 76 chr6 7785415 7785627 -174629615 - L1ME1 LINE L1 -592 5574 5416 2306 92 3 3 chr6 7785627 7785922 -174629320 - AluSq SINE Alu -18 295 1 2616 182 29 76 chr6 7785922 7785954 -174629288 - L1ME1 LINE L1 -750 5416 5384 2230 168 104 28 chr6 7786409 7786878 -174628364 - MLT1D LTR MaLR 0 505 1 2176 109 0 10 chr6 7787237 7787540 -174627702 + AluSx SINE Alu 1 300 -12 812 222 144 92 chr6 7789304 7789557 -174625685 - L1MC5 LINE L1 -1 7960 7722 1949 131 3 20 chr6 7789557 7789862 -174625380 + AluSx SINE Alu 1 300 -12 812 222 144 92 chr6 7789862 7790274 -174624968 - L1MC5 LINE L1 -239 7722 7260 587 220 30 18 chr6 7790406 7790574 -174624668 - L1MC5 LINE L1 -733 7228 7059 2271 108 0 3 chr6 7791038 7791343 -174623899 - AluSg SINE Alu -6 304 1 21 0 0 0 chr6 7792511 7792532 -174622710 + AT_rich Low_complexity Low_complexity 1 21 0 2329 103 0 0 chr6 7792539 7792840 -174622402 + AluSx SINE Alu 1 301 -11 2383 215 75 2 chr6 7792900 7793417 -174621825 + MER68 LTR ERV1 1 555 -7 384 267 68 19 chr6 7793590 7793796 -174621446 - L1MC5 LINE L1 -22 7939 7724 214 178 0 0 chr6 7793854 7793899 -174621343 + T-rich Low_complexity Low_complexity 1 45 0 1463 148 4 4 chr6 7793921 7794150 -174621092 - AluJb SINE Alu -83 229 1 2206 96 0 60 chr6 7794528 7794860 -174620382 + AluSx SINE Alu 1 312 0 2424 77 6 6 chr6 7795571 7795883 -174619359 - AluSq SINE Alu -1 312 1 403 235 71 0 chr6 7795946 7796044 -174619198 - MIR SINE MIR -109 153 49 1594 138 14 86 chr6 7796744 7796867 -174618375 - Charlie1b DNA MER1_type -2241 520 390 1647 172 11 11 chr6 7796867 7797166 -174618076 - AluJo SINE Alu 0 304 6 1594 138 14 86 chr6 7797166 7797464 -174617778 - Charlie1b DNA MER1_type -2371 390 53 1186 148 28 0 chr6 7797691 7797873 -174617369 + MER5A DNA MER1_type 3 189 0 2207 107 0 22 chr6 7798076 7798394 -174616848 + AluSx SINE Alu 1 311 -1 2276 101 10 0 chr6 7798765 7799061 -174616181 + AluSx SINE Alu 1 299 -13 1718 168 0 31 chr6 7799234 7799526 -174615716 - AluJo SINE Alu -2 310 28 2150 134 0 13 chr6 7801323 7801637 -174613605 + AluSx SINE Alu 1 310 -2 2369 100 0 3 chr6 7801704 7802014 -174613228 + AluSc SINE Alu 1 309 0 1325 192 91 25 chr6 7802030 7802316 -174612926 + AluJb SINE Alu 1 305 -7 524 292 35 59 chr6 7802399 7802506 -174612736 + L2 LINE L2 2722 2830 -442 1577 194 96 72 chr6 7802506 7802683 -174612559 + MSTD LTR MaLR 1 172 -224 2104 110 0 0 chr6 7802683 7803012 -174612230 + AluY SINE Alu 1 329 0 1577 194 96 72 chr6 7803012 7803220 -174612022 + MSTD LTR MaLR 172 396 0 524 292 35 59 chr6 7803220 7803504 -174611738 + L2 LINE L2 2830 3091 -181 433 275 19 50 chr6 7803661 7803821 -174611421 + L2 LINE L2 3158 3312 -1 2007 129 26 13 chr6 7804036 7804338 -174610904 + AluSg SINE Alu 1 306 -4 368 164 0 0 chr6 7804704 7804765 -174610477 + MER41A LTR ERV1 400 460 -94 24 32 0 0 chr6 7805025 7805056 -174610186 + AT_rich Low_complexity Low_complexity 1 31 0 682 228 7 13 chr6 7805954 7806103 -174609139 - MIR SINE MIR -59 203 56 2011 212 98 4 chr6 7806363 7806840 -174608402 - MER119 DNA MER1_type -3 580 59 2287 103 0 0 chr6 7806934 7807226 -174608016 + AluSx SINE Alu 5 296 -16 737 258 159 50 chr6 7807281 7807687 -174607555 - L1ME LINE L1 -354 5808 5447 2301 137 23 35 chr6 7807687 7808082 -174607160 + MLT1B LTR MaLR 1 390 0 737 258 159 50 chr6 7808082 7808112 -174607130 - L1ME LINE L1 -715 5447 5422 2231 103 14 0 chr6 7808112 7808404 -174606838 - AluSx SINE Alu -16 296 1 737 258 159 50 chr6 7808404 7808417 -174606825 - L1ME LINE L1 -740 5422 5412 2349 81 7 0 chr6 7808417 7808713 -174606529 - AluY SINE Alu -13 298 1 737 258 159 50 chr6 7808713 7808888 -174606354 - L1ME LINE L1 -750 5412 5257 2182 95 3 3 chr6 7808888 7809172 -174606070 - AluSg SINE Alu -22 288 5 1585 138 8 8 chr6 7809173 7809420 -174605822 + AluSg SINE Alu 55 301 -9 737 258 159 50 chr6 7809420 7809445 -174605797 - L1ME LINE L1 -905 5257 5236 1911 140 74 37 chr6 7809445 7809796 -174605446 + THE1B LTR MaLR 1 364 0 737 258 159 50 chr6 7809796 7810602 -174604640 - L1ME LINE L1 -926 5236 4164 1853 59 0 0 chr6 7810602 7810821 -174604421 - AluY SINE Alu -47 264 46 737 258 159 50 chr6 7810821 7810839 -174604403 - L1ME LINE L1 -1998 4164 4149 809 182 8 0 chr6 7810974 7811106 -174604136 + FLAM_C SINE Alu 1 133 0 1433 185 65 7 chr6 7811209 7811485 -174603757 - AluJb SINE Alu -18 294 3 2342 98 3 0 chr6 7811487 7811794 -174603448 - AluSp SINE Alu -5 308 1 814 229 13 13 chr6 7811799 7811956 -174603286 - FRAM SINE Alu -19 157 1 537 224 34 142 chr6 7811999 7812204 -174603038 + MIR SINE MIR 45 227 -35 1353 126 0 0 chr6 7813104 7813294 -174601948 - AluSg/x SINE Alu -40 272 83 2421 50 3 47 chr6 7814227 7814545 -174600697 + AluY SINE Alu 1 304 -7 456 227 70 64 chr6 7816865 7817037 -174598205 - L2 LINE L2 -7 3306 3134 868 281 191 11 chr6 7817114 7817558 -174597684 - L2 LINE L2 -337 2977 2454 499 337 122 25 chr6 7817677 7817956 -174597286 - L2 LINE L2 -9 3263 2958 948 157 0 76 chr6 7818098 7818296 -174596946 + MER20 DNA MER1_type 1 183 -36 718 238 85 68 chr6 7818579 7818860 -174596382 + MER102b DNA MER1_type 33 318 -23 890 147 61 37 chr6 7819006 7819169 -174596073 - FRAM SINE Alu -5 171 5 27 62 0 0 chr6 7819462 7819510 -174595732 + AT_rich Low_complexity Low_complexity 1 48 0 209 266 0 0 chr6 7819659 7819723 -174595519 + (ATG)n Simple_repeat Simple_repeat 3 66 0 384 264 155 19 chr6 7820042 7820197 -174595045 + L1ME4a LINE L1 5323 5478 -643 405 280 88 16 chr6 7820290 7820472 -174594770 + L1ME4a LINE L1 5671 5865 -256 2332 96 0 0 chr6 7820641 7820944 -174594298 + AluSx SINE Alu 1 303 -9 2326 115 3 0 chr6 7821721 7822025 -174593217 + AluSp SINE Alu 1 305 -8 2044 146 7 0 chr6 7822203 7822497 -174592745 - AluJb SINE Alu -16 296 1 252 0 0 0 chr6 7823382 7823410 -174591832 + (TG)n Simple_repeat Simple_repeat 2 29 0 2166 131 0 0 chr6 7823471 7823777 -174591465 + AluSx SINE Alu 1 306 -6 2554 61 0 3 chr6 7824350 7824661 -174590581 + AluY SINE Alu 2 311 0 486 200 0 20 chr6 7824723 7824823 -174590419 + FLAM_A SINE Alu 41 138 -4 636 243 153 16 chr6 7826685 7826874 -174588368 - MER58C DNA MER1_type 0 215 1 1272 155 120 11 chr6 7826882 7827166 -174588076 + MER33 DNA MER1_type 1 315 -9 1873 149 42 0 chr6 7828179 7828468 -174586774 - AluSx SINE Alu -11 301 1 1602 151 102 31 chr6 7828572 7828897 -174586345 - MER7A DNA MER2_type 0 346 1 291 327 9 19 chr6 7829640 7829747 -174585495 - L2 LINE L2 -497 2817 2712 543 215 74 0 chr6 7830139 7830302 -174584940 + MER104 DNA MER2_type 4 178 -2 1265 174 4 8 chr6 7831885 7832120 -174583122 - MER46A DNA MER2_type 0 236 3 234 91 0 0 chr6 7832267 7832300 -174582942 + (T)n Simple_repeat Simple_repeat 1 33 0 213 121 0 0 chr6 7832440 7832473 -174582769 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1977 168 3 0 chr6 7832476 7832786 -174582456 - AluJb SINE Alu -1 311 1 4738 141 59 50 chr6 7832810 7833152 -174582090 - L1MB3 LINE L1 -1 6182 5845 1966 137 7 7 chr6 7833152 7833451 -174581791 - AluSx SINE Alu -13 299 1 4738 141 59 50 chr6 7833451 7833977 -174581265 - L1MB3 LINE L1 -338 5845 5307 1349 209 10 39 chr6 7833977 7834283 -174580959 - AluJo SINE Alu -15 297 1 4738 141 59 50 chr6 7834283 7834474 -174580768 - L1MB3 LINE L1 -876 5307 5119 2086 136 3 3 chr6 7834531 7834826 -174580416 - AluSx SINE Alu -17 295 1 2402 97 3 0 chr6 7835199 7835510 -174579732 - AluSp SINE Alu -1 312 1 885 134 20 7 chr6 7835512 7835661 -174579581 - AluYa8 SINE Alu -10 300 150 308 95 0 0 chr6 7835661 7835703 -174579539 - AluSq SINE Alu -129 174 133 513 0 0 0 chr6 7835703 7835760 -174579482 + (TG)n Simple_repeat Simple_repeat 2 58 0 1948 127 4 0 chr6 7835760 7836028 -174579214 - AluSg SINE Alu -28 282 14 303 29 0 0 chr6 7836028 7836062 -174579180 - AluY SINE Alu -252 50 17 1148 133 5 51 chr6 7836062 7836257 -174578985 - AluSx SINE Alu -124 188 3 180 0 0 0 chr6 7836285 7836305 -174578937 + (A)n Simple_repeat Simple_repeat 1 20 0 1486 165 64 32 chr6 7838269 7838568 -174576674 - MER58D DNA MER1_type -2050 370 82 2288 105 0 0 chr6 7838568 7838862 -174576380 + AluSx SINE Alu 1 294 -18 2211 99 14 3 chr6 7838862 7839156 -174576086 + AluSx SINE Alu 1 297 -15 1486 165 64 32 chr6 7839156 7839200 -174576042 - MER58D DNA MER1_type -2337 83 15 30 77 0 0 chr6 7839503 7839568 -174575674 + AT_rich Low_complexity Low_complexity 1 65 0 2426 202 7 0 chr6 7841232 7841657 -174573585 + Tigger7 DNA MER2_type 2 429 -304 1393 162 131 4 chr6 7841657 7841916 -174573326 + AluJo SINE Alu 16 307 -5 2428 130 46 23 chr6 7841916 7842307 -174572935 + Tigger7 DNA MER2_type 440 839 -1648 1560 136 62 0 chr6 7842306 7842548 -174572694 + Tigger7 DNA MER2_type 2227 2483 -4 * 2523 51 14 0 chr6 7842856 7843150 -174572092 + AluY SINE Alu 1 298 -13 1013 164 0 0 chr6 7843163 7843322 -174571920 + FRAM SINE Alu 1 159 -17 1976 137 3 22 chr6 7843455 7843769 -174571473 + AluJb SINE Alu 5 312 0 22 0 0 0 chr6 7844184 7844206 -174571036 + AT_rich Low_complexity Low_complexity 1 22 0 988 235 256 13 chr6 7844538 7845301 -174569941 - L2 LINE L2 0 3313 2369 2243 107 13 0 chr6 7846439 7846739 -174568503 - AluSx SINE Alu -8 304 1 198 219 24 0 chr6 7847640 7847681 -174567561 + MIR SINE MIR 141 182 -80 481 253 45 11 chr6 7847806 7847984 -174567258 + L1MC5 LINE L1 7260 7443 -518 2349 105 0 0 chr6 7847998 7848293 -174566949 + AluSg SINE Alu 1 295 -15 658 209 90 65 chr6 7848336 7848690 -174566552 + L1MC5 LINE L1 7554 7916 -45 665 138 16 16 chr6 7848711 7848834 -174566408 - AluJo/FRAM SINE Alu -25 287 165 392 97 113 0 chr6 7848834 7848896 -174566346 - AluJ/FLAM SINE Alu -233 69 1 2537 84 0 0 chr6 7849236 7849547 -174565695 + AluSx SINE Alu 1 311 -1 484 219 47 111 chr6 7849553 7849850 -174565392 + L2 LINE L2 3030 3307 -6 2195 100 43 0 chr6 7850255 7850554 -174564688 + AluSx SINE Alu 1 312 0 213 276 79 0 chr6 7850960 7851036 -174564206 + MIR3 SINE MIR 76 157 -51 2327 107 0 0 chr6 7851173 7851482 -174563760 + AluY SINE Alu 1 309 -2 1823 90 13 87 chr6 7851800 7852099 -174563143 - AluSq SINE Alu -6 307 31 8970 157 42 30 chr6 7852099 7853775 -174561467 + pTR5 LTR ERV1 743 2438 0 1543 183 39 0 chr6 7853926 7854211 -174561031 + AluSq SINE Alu 1 296 -17 255 159 0 0 chr6 7854301 7854345 -174560897 + MIR SINE MIR 101 144 -64 752 184 160 10 chr6 7854379 7854585 -174560657 + MER33 DNA MER1_type 1 237 -87 1663 164 29 0 chr6 7854711 7854986 -174560256 + AluJo SINE Alu 1 283 -29 794 163 81 73 chr6 7855353 7855368 -174559874 - L1MA4 LINE L1 -2 6298 6285 2327 96 0 3 chr6 7855368 7855661 -174559581 + AluSg SINE Alu 1 292 -18 794 163 81 73 chr6 7855661 7855770 -174559472 - L1MA4 LINE L1 -15 6285 6178 2001 130 0 42 chr6 7855770 7856077 -174559165 + AluSx SINE Alu 1 294 -18 794 163 81 73 chr6 7856077 7856197 -174559045 - L1MA4 LINE L1 -122 6178 6051 2161 101 30 7 chr6 7856678 7856974 -174558268 - AluSq SINE Alu -10 303 1 22 0 0 0 chr6 7857085 7857107 -174558135 + AT_rich Low_complexity Low_complexity 1 22 0 1522 184 46 23 chr6 7857135 7857440 -174557802 + AluJo SINE Alu 1 312 0 197 244 122 24 chr6 7857723 7857805 -174557437 + MIR3 SINE MIR 73 162 -46 2110 114 7 3 chr6 7860153 7860442 -174554800 - AluSx SINE Alu -22 290 1 918 98 53 0 chr6 7860512 7860644 -174554598 + MER85 DNA T2_type 1 139 0 1742 173 23 23 chr6 7860699 7861005 -174554237 - AluJb SINE Alu -6 306 1 233 213 0 0 chr6 7861336 7861383 -174553859 + (CA)n Simple_repeat Simple_repeat 2 48 0 3168 142 95 2 chr6 7861665 7862701 -174552541 + L1M3f LINE L1 84 1232 -4096 2342 112 0 10 chr6 7862702 7863014 -174552228 + AluSx SINE Alu 1 309 -3 2251 116 3 0 chr6 7863169 7863470 -174551772 - AluSx SINE Alu -10 302 1 1418 164 38 57 chr6 7863699 7864126 -174551116 + AluJb SINE Alu 1 448 -20 213 39 0 0 chr6 7864126 7864152 -174551090 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 1418 164 38 57 chr6 7864152 7864173 -174551069 + AluJb SINE Alu 448 468 0 2052 118 11 0 chr6 7864288 7864598 -174550644 + AluSp SINE Alu 1 313 0 2200 116 7 23 chr6 7864948 7865258 -174549984 - AluSg SINE Alu -5 305 1 1746 172 3 20 chr6 7865598 7865895 -174549347 - AluJo SINE Alu -15 297 6 432 239 109 16 chr6 7865937 7866121 -174549121 - HAL1 LINE L1 -69 2438 2238 522 179 9 9 chr6 7866174 7866280 -174548962 - FLAM_A SINE Alu -9 133 28 331 321 131 25 chr6 7866288 7866684 -174548558 - HAL1 LINE L1 -345 2162 1725 287 178 131 99 chr6 7866654 7866791 -174548451 - HAL1 LINE L1 -1330 1177 1031 * 2443 70 0 10 chr6 7866791 7867103 -174548139 + AluSc SINE Alu 1 309 0 287 178 131 99 chr6 7867103 7867156 -174548086 - HAL1 LINE L1 -1476 1031 981 357 176 0 44 chr6 7867165 7867233 -174548009 + MER74C LTR ERVL 6 70 -390 401 220 115 55 chr6 7867352 7867552 -174547690 - HAL1 LINE L1 -1940 567 356 7457 169 93 39 chr6 7867592 7869201 -174546041 + pTR5 LTR ERV1 743 2438 0 348 113 72 124 chr6 7869782 7869860 -174545382 - MER97c DNA MER1_type? -915 175 101 1681 168 0 14 chr6 7869860 7870151 -174545091 - AluJb SINE Alu -25 287 1 348 113 72 124 chr6 7870151 7870169 -174545073 - MER97c DNA MER1_type? -989 101 84 181 273 0 0 chr6 7870402 7870446 -174544796 - L2 LINE L2 -2 3311 3268 2089 110 14 3 chr6 7870489 7870780 -174544462 + AluSq SINE Alu 1 294 -19 2271 79 0 40 chr6 7870780 7871084 -174544158 + AluY SINE Alu 1 292 -19 2129 115 3 16 chr6 7871127 7871441 -174543801 - AluSx SINE Alu -2 310 1 276 361 57 0 chr6 7871871 7871993 -174543249 - L2 LINE L2 -564 2750 2622 2057 135 21 12 chr6 7873064 7873398 -174541844 - MER1B DNA MER1_type 0 337 1 208 216 0 39 chr6 7873593 7873644 -174541598 - L2 LINE L2 -4 3309 3261 2254 65 135 29 chr6 7873873 7873984 -174541258 - MER51B LTR ERV1 0 377 279 2259 67 0 51 chr6 7873984 7874299 -174540943 + AluY SINE Alu 1 299 -12 2254 65 135 29 chr6 7874299 7874528 -174540714 - MER51B LTR ERV1 -98 279 1 232 195 0 0 chr6 7874756 7874797 -174540445 + L2 LINE L2 3226 3266 -6 180 323 157 15 chr6 7874803 7875134 -174540108 - L2 LINE L2 -341 2973 2596 2163 103 0 22 chr6 7875209 7875528 -174539714 + AluSq SINE Alu 1 312 -1 1691 179 33 0 chr6 7875572 7875874 -174539368 - AluJo SINE Alu 0 312 1 2231 99 0 0 chr6 7876205 7876507 -174538735 - AluSg SINE Alu -7 303 2 21 0 0 0 chr6 7876625 7876646 -174538596 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 7876957 7876978 -174538264 + (CAG)n Simple_repeat Simple_repeat 1 21 0 2280 91 10 0 chr6 7877095 7877404 -174537838 - AluSx SINE Alu 0 312 1 1811 117 20 34 chr6 7877574 7877872 -174537370 - AluSx SINE Alu -18 294 1 2229 181 48 9 chr6 7877874 7878316 -174536926 + L1MB7 LINE L1 5706 6164 -20 249 332 132 20 chr6 7878351 7878700 -174536542 - L1MC4a LINE L1 -1602 6206 5819 1703 144 6 52 chr6 7878763 7878873 -174536369 - AluJo SINE Alu 0 312 198 4585 126 96 21 chr6 7878873 7879637 -174535605 + LTR1B LTR ERV1 4 824 -2 1703 144 6 52 chr6 7879637 7879853 -174535389 - AluJo SINE Alu -114 198 1 926 254 132 46 chr6 7879854 7880178 -174535064 - L1MC4a LINE L1 -2042 5766 5389 2130 114 3 0 chr6 7880178 7880484 -174534758 - AluSx SINE Alu -5 307 1 926 254 132 46 chr6 7880484 7880620 -174534622 - L1MC4a LINE L1 -2419 5389 5266 1698 146 28 24 chr6 7880752 7881040 -174534202 + AluJb SINE Alu 8 296 -16 2516 182 97 10 chr6 7881438 7881932 -174533310 + MLT1F1 LTR MaLR 20 556 -11 2144 94 3 0 chr6 7882063 7882351 -174532891 + AluSq SINE Alu 1 289 -24 1586 167 44 14 chr6 7882369 7882662 -174532580 - AluJb SINE Alu -10 302 1 7706 143 113 69 chr6 7882672 7884297 -174530945 + pTR5 LTR ERV1 742 2438 0 2766 189 86 18 chr6 7884335 7884906 -174530336 + LTR1B LTR ERV1 1 610 -216 2016 122 3 0 chr6 7884913 7885199 -174530043 + AluSq SINE Alu 7 293 -20 817 226 66 9 chr6 7885207 7885419 -174529823 - MER67B LTR ERV1 -437 224 1 2133 143 74 25 chr6 7885424 7885702 -174529540 - L1MB3 LINE L1 -69 6114 5806 2184 95 3 0 chr6 7885702 7885996 -174529246 + AluSg SINE Alu 2 296 -14 2133 143 74 25 chr6 7885996 7886152 -174529090 - L1MB3 LINE L1 -377 5806 5659 1573 137 96 0 chr6 7886152 7886422 -174528820 - AluJo SINE Alu -8 304 9 495 291 145 42 chr6 7886713 7886967 -174528275 + L2 LINE L2 2917 3220 -93 1287 182 164 33 chr6 7886967 7887015 -174528227 - MER93b LTR ERV1 0 373 333 2291 94 0 0 chr6 7887015 7887314 -174527928 + AluSc SINE Alu 1 299 -10 1287 182 164 33 chr6 7887314 7887595 -174527647 - MER93b LTR ERV1 -40 333 1 495 291 145 42 chr6 7887595 7887698 -174527544 + L2 LINE L2 3220 3311 -2 32 0 0 0 chr6 7888357 7888389 -174526853 + AT_rich Low_complexity Low_complexity 1 32 0 769 161 31 0 chr6 7888409 7888539 -174526703 + AluJb SINE Alu 179 312 0 668 262 4 152 chr6 7888539 7888687 -174526555 + L1MC2 LINE L1 5672 5840 -340 1661 140 16 23 chr6 7888687 7888822 -174526420 + AluJo SINE Alu 1 135 -177 2087 130 0 0 chr6 7888822 7889114 -174526128 + AluSx SINE Alu 1 292 -20 1661 140 16 23 chr6 7889114 7889286 -174525956 + AluJo SINE Alu 135 306 -6 668 262 4 152 chr6 7889286 7889308 -174525934 + L1MC2 LINE L1 5840 5864 -316 1011 143 15 35 chr6 7889308 7889511 -174525731 + L1MB3 LINE L1 5983 6181 -2 2171 107 19 29 chr6 7889511 7889826 -174525416 + L1MB3 LINE L1 5812 6131 -52 1844 119 40 0 chr6 7889826 7890104 -174525138 + AluSg SINE Alu 1 289 -21 2171 107 19 29 chr6 7890104 7890156 -174525086 + L1MB3 LINE L1 6131 6182 -1 668 262 4 152 chr6 7890156 7890182 -174525060 + L1MC2 LINE L1 5793 5821 -359 330 209 86 29 chr6 7890568 7890673 -174524569 + LTR68 LTR ERV1 615 725 -15 391 284 30 12 chr6 7890737 7890819 -174524423 + L1P5 LINE L1 5276 5355 -796 1867 144 24 0 chr6 7890819 7891111 -174524131 + AluSx SINE Alu 1 299 -13 391 284 30 12 chr6 7891111 7891197 -174524045 + L1P5 LINE L1 5355 5447 -704 1305 179 0 60 chr6 7891286 7891571 -174523671 + L1MB8 LINE L1 5910 6177 -1 1229 113 88 29 chr6 7891579 7891819 -174523423 + L1MA9 LINE L1 6059 6312 0 1640 168 41 3 chr6 7891833 7892125 -174523117 + AluJb SINE Alu 2 304 -8 340 219 23 76 chr6 7892164 7892294 -174522948 + L1ME LINE L1 5455 5578 -543 427 270 103 17 chr6 7892349 7892523 -174522719 + L1ME LINE L1 5581 5769 -393 576 269 32 56 chr6 7892632 7892759 -174522483 + L1ME3A LINE L1 5706 5826 -344 2312 83 0 0 chr6 7892759 7893059 -174522183 + AluSx SINE Alu 1 300 -12 576 269 32 56 chr6 7893059 7893180 -174522062 + L1ME3A LINE L1 5826 5948 -222 462 232 168 0 chr6 7894457 7894609 -174520633 + MER5A DNA MER1_type 4 186 -3 1359 146 0 53 chr6 7895529 7895636 -174519606 - AluJo SINE Alu -76 236 125 2343 69 10 3 chr6 7895636 7895941 -174519301 - AluSx SINE Alu 0 312 6 1359 146 0 53 chr6 7895941 7896080 -174519162 - AluJo SINE Alu -187 125 3 333 234 76 21 chr6 7896134 7896279 -174518963 - L1ME4a LINE L1 -2 6119 5967 2156 96 3 3 chr6 7896673 7896964 -174518278 - AluSp SINE Alu -22 291 1 193 128 0 77 chr6 7897038 7897077 -174518165 + MIR SINE MIR 217 252 -10 491 318 74 9 chr6 7897455 7897672 -174517570 + L2 LINE L2 1912 2142 -1172 3133 142 126 50 chr6 7897718 7898246 -174516996 - L1MB3 LINE L1 -14 6169 5683 1201 206 53 14 chr6 7898246 7898527 -174516715 - AluJo SINE Alu -20 292 1 1660 103 4 4 chr6 7898533 7898765 -174516477 - AluSc SINE Alu -16 293 62 3133 142 126 50 chr6 7898765 7898896 -174516346 - L1MB3 LINE L1 -504 5679 5452 1776 177 0 0 chr6 7898914 7899214 -174516028 - AluSx SINE Alu -12 300 1 2209 107 3 0 chr6 7899746 7900055 -174515187 + AluSx SINE Alu 1 310 -2 244 250 0 0 chr6 7900280 7900336 -174514906 + A-rich Low_complexity Low_complexity 1 56 0 437 276 103 61 chr6 7900431 7900913 -174514329 - L2 LINE L2 -171 3101 2585 416 223 0 138 chr6 7900946 7901076 -174514166 - L2 LINE L2 0 3272 3161 771 157 8 0 chr6 7901102 7901223 -174514019 - MSTD LTR MaLR -2 394 273 2034 104 0 52 chr6 7901263 7901571 -174513671 + AluSx SINE Alu 1 292 -20 342 107 0 0 chr6 7901571 7901627 -174513615 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 873 150 7 0 chr6 7901653 7901793 -174513449 - AluJb SINE Alu -171 141 1 726 211 173 46 chr6 7901795 7901930 -174513312 - MSTD LTR MaLR -129 267 150 1509 173 0 22 chr6 7901930 7902207 -174513035 - AluJo SINE Alu -31 281 11 726 211 173 46 chr6 7902207 7902308 -174512934 - MSTD LTR MaLR -246 150 1 415 338 77 5 chr6 7902427 7902649 -174512593 - L2 LINE L2 -225 3047 2810 726 306 197 22 chr6 7902725 7903369 -174511873 - L2 LINE L2 -746 2568 1812 190 154 0 77 chr6 7903684 7903723 -174511519 - MIR SINE MIR -10 252 217 399 210 68 49 chr6 7904183 7904204 -174511038 + L1ME4a LINE L1 5957 5976 -145 2105 107 0 3 chr6 7904204 7904503 -174510739 + AluSc SINE Alu 1 298 -11 399 210 68 49 chr6 7904503 7904643 -174510599 + L1ME4a LINE L1 5976 6121 0 1588 165 0 0 chr6 7904695 7904961 -174510281 + AluJo SINE Alu 2 267 -45 2080 101 3 13 chr6 7905458 7905756 -174509486 - AluSq SINE Alu -18 295 1 2217 72 23 3 chr6 7906078 7906382 -174508860 + AluY SINE Alu 1 310 -1 240 35 0 0 chr6 7906920 7906949 -174508293 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2343 70 0 3 chr6 7907050 7907352 -174507890 - AluY SINE Alu -10 301 1 288 102 0 0 chr6 7907475 7907524 -174507718 + (A)n Simple_repeat Simple_repeat 1 49 0 1870 119 0 51 chr6 7909274 7909586 -174505656 + AluSx SINE Alu 1 296 -16 2361 230 51 24 chr6 7909842 7910581 -174504661 - L1M4 LINE L1 -1267 4879 4121 428 174 0 54 chr6 7910581 7910673 -174504569 - MER6 DNA MER2_type 0 865 58 988 162 18 0 chr6 7910687 7910854 -174504388 - AluJo SINE Alu -142 170 1 509 167 29 29 chr6 7910859 7910961 -174504281 + MER6 DNA MER2_type 43 865 0 1439 202 0 73 chr6 7910961 7911058 -174504184 - L1M4 LINE L1 -2024 4122 4020 2166 148 42 0 chr6 7911058 7911436 -174503806 - L1MB3 LINE L1 -7 6176 5783 1439 202 0 73 chr6 7911436 7911710 -174503532 - L1M4 LINE L1 -2126 4020 3778 * 1938 186 20 18 chr6 7911706 7912105 -174503137 - L1MB3 LINE L1 -1091 5055 4656 254 250 16 0 chr6 7912166 7912210 -174503032 + MER5B DNA MER1_type 1 48 -130 2198 117 0 0 chr6 7912210 7912517 -174502725 - AluSx SINE Alu -5 307 1 254 250 16 0 chr6 7912517 7912536 -174502706 + MER5B DNA MER1_type 48 65 -113 1892 115 59 3 chr6 7912623 7912911 -174502331 - AluSx SINE Alu -8 304 1 1911 139 0 32 chr6 7912937 7913253 -174501989 - AluSx SINE Alu 0 312 7 393 276 41 8 chr6 7913596 7913719 -174501523 + MIR SINE MIR 119 245 -17 1998 98 39 3 chr6 7914282 7914567 -174500675 - AluSx SINE Alu -17 295 1 1913 144 0 10 chr6 7914669 7914975 -174500267 + AluJb SINE Alu 1 303 -9 1662 177 0 7 chr6 7915117 7915411 -174499831 - AluJo SINE Alu -20 292 1 262 351 106 46 chr6 7915485 7915833 -174499409 + L2 LINE L2 2846 3214 -58 1792 164 0 6 chr6 7916502 7916813 -174498429 + AluJo SINE Alu 1 309 -3 217 278 37 0 chr6 7916997 7917051 -174498191 - L2 LINE L2 -9 3263 3208 4667 176 36 14 chr6 7917811 7919350 -174495892 - L1MB4 LINE L1 0 6180 4611 226 308 94 26 chr6 7919773 7919890 -174495352 - L2 LINE L2 -6 3307 3183 303 268 60 66 chr6 7920479 7920662 -174494580 + L2 LINE L2 2571 2752 -562 2533 133 3 8 chr6 7920830 7921221 -174494021 + MLT1B LTR MaLR 2 567 0 304 284 45 8 chr6 7921277 7921411 -174493831 - L1MC4a LINE L1 -1878 5930 5792 2339 107 0 0 chr6 7921426 7921724 -174493518 - AluSx SINE Alu -14 298 1 247 275 37 64 chr6 7921848 7921957 -174493285 - MIR3 SINE MIR -14 194 89 250 286 57 0 chr6 7922140 7922210 -174493032 - MIR3 SINE MIR -23 185 112 231 114 227 0 chr6 7922238 7922282 -174492960 - L1MB5 LINE L1 -240 5934 5881 37 23 0 0 chr6 7922548 7922592 -174492650 + AT_rich Low_complexity Low_complexity 1 44 0 837 123 0 16 chr6 7922593 7922715 -174492527 - FLAM_C SINE Alu -22 121 2 238 285 65 75 chr6 7922880 7923080 -174492162 - L2 LINE L2 -108 3164 2967 22 0 0 0 chr6 7923463 7923485 -174491757 + AT_rich Low_complexity Low_complexity 1 22 0 1822 164 49 9 chr6 7923549 7923796 -174491446 + MER46B DNA MER2_type 14 154 -2577 16141 109 20 21 chr6 7923796 7926216 -174489026 - Tigger1 DNA MER2_type 0 2418 1 1822 164 49 9 chr6 7926216 7926297 -174488945 + MER46B DNA MER2_type 154 230 -6 465 19 0 0 chr6 7926297 7926351 -174488891 + (TG)n Simple_repeat Simple_repeat 1 54 0 1194 182 11 58 chr6 7926367 7926642 -174488600 - AluJo SINE Alu -16 296 35 1870 112 6 98 chr6 7927111 7927449 -174487793 + AluSp SINE Alu 1 307 -6 216 321 98 16 chr6 7927692 7927938 -174487304 - L2 LINE L2 -665 2649 2384 2369 97 0 0 chr6 7928269 7928568 -174486674 + AluSx SINE Alu 1 299 -13 2320 106 3 0 chr6 7928569 7928881 -174486361 + AluSp SINE Alu 1 313 0 1467 161 101 4 chr6 7930174 7930441 -174484801 - AluJo SINE Alu -13 299 7 2155 119 27 0 chr6 7931043 7931336 -174483906 + AluSx SINE Alu 1 301 -11 423 298 53 0 chr6 7931338 7931452 -174483790 + MIR3 SINE MIR 41 160 -48 541 224 36 73 chr6 7931452 7931644 -174483598 + MER63A DNA MER1_type 1 185 -25 3673 163 18 24 chr6 7933135 7933332 -174481910 + L1MB3 LINE L1 5476 5673 -510 2251 102 0 37 chr6 7933332 7933476 -174481766 + AluSx SINE Alu 1 149 -163 2209 113 3 0 chr6 7933476 7933767 -174481475 + AluSq SINE Alu 1 292 -21 2251 102 0 37 chr6 7933767 7933944 -174481298 + AluSx SINE Alu 149 310 -2 3673 163 18 24 chr6 7933944 7934458 -174480784 + L1MB3 LINE L1 5673 6183 0 1838 168 3 10 chr6 7934534 7934838 -174480404 - AluJb SINE Alu -10 302 1 2117 145 0 3 chr6 7934919 7935223 -174480019 + AluSx SINE Alu 9 311 -1 253 136 34 0 chr6 7935223 7935277 -174479965 + GA-rich Low_complexity Low_complexity 9 64 0 505 292 24 0 chr6 7935277 7935445 -174479797 + MIR SINE MIR 84 255 -7 899 146 0 0 chr6 7935445 7935575 -174479667 + FLAM_C SINE Alu 1 130 -3 1043 146 59 64 chr6 7936297 7936517 -174478725 + MER20 DNA MER1_type 1 219 0 2333 105 0 0 chr6 7936651 7936947 -174478295 + AluSx SINE Alu 2 297 -15 635 128 0 149 chr6 7937009 7937150 -174478092 - FLAM_C SINE Alu 0 143 24 730 264 28 14 chr6 7937641 7937857 -174477385 + MIR SINE MIR 42 260 -2 253 270 123 49 chr6 7938347 7938401 -174476841 + MER5B DNA MER1_type 1 50 -128 1385 165 126 8 chr6 7938401 7938662 -174476580 + AluJb SINE Alu 1 292 -20 253 270 123 49 chr6 7938662 7938770 -174476472 + MER5B DNA MER1_type 50 175 -3 200 267 33 0 chr6 7938786 7938846 -174476396 - MER5A DNA MER1_type 0 189 128 1979 150 3 3 chr6 7939416 7939710 -174475532 - AluJo SINE Alu -18 294 1 270 0 0 0 chr6 7940378 7940408 -174474834 + (CA)n Simple_repeat Simple_repeat 1 30 0 465 181 62 42 chr6 7940427 7940571 -174474671 - L1ME4a LINE L1 -1 6120 5974 2534 146 29 77 chr6 7940923 7941402 -174473840 - LTR32 LTR ERVL 0 471 16 775 224 29 6 chr6 7941729 7941903 -174473339 + MER5B DNA MER1_type 1 178 0 533 274 5 48 chr6 7941911 7942097 -174473145 + MER5B DNA MER1_type 1 178 0 252 312 18 37 chr6 7942207 7942316 -174472926 + MIR3 SINE MIR 12 118 -90 180 0 0 0 chr6 7942410 7942430 -174472812 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 2394 77 3 3 chr6 7944372 7944670 -174470572 - AluSq SINE Alu -15 298 1 1705 165 43 16 chr6 7945314 7945617 -174469625 - AluJb SINE Alu -1 311 1 843 147 0 52 chr6 7946660 7946796 -174468446 - AluJb SINE Alu -181 131 3 1887 148 10 7 chr6 7947557 7947854 -174467388 + AluJo SINE Alu 3 300 -12 714 207 59 68 chr6 7947877 7948064 -174467178 - L1ME3A LINE L1 -5 6165 5979 2162 141 3 0 chr6 7948064 7948369 -174466873 - AluSx SINE Alu -6 306 1 714 207 59 68 chr6 7948369 7948418 -174466824 - L1ME3A LINE L1 -191 5979 5931 879 150 15 0 chr6 7949190 7949323 -174465919 - FAM SINE Alu -43 142 8 273 57 0 0 chr6 7949381 7949416 -174465826 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2015 123 36 26 chr6 7950108 7950417 -174464825 + AluSx SINE Alu 1 312 0 2414 69 0 7 chr6 7951376 7951667 -174463575 - AluSc SINE Alu -20 289 1 183 129 0 0 chr6 7951802 7951833 -174463409 + (GGGAGA)n Simple_repeat Simple_repeat 5 35 0 412 314 24 39 chr6 7951902 7952109 -174463133 + MIR SINE MIR 59 262 0 262 307 71 55 chr6 7952105 7952232 -174463010 + L2 LINE L2 3139 3267 -5 * 2217 121 0 19 chr6 7952757 7953071 -174462171 + AluSq SINE Alu 1 308 -5 231 61 0 0 chr6 7953200 7953233 -174462009 + (T)n Simple_repeat Simple_repeat 1 33 0 598 292 56 64 chr6 7954206 7954566 -174460676 + L1ME3 LINE L1 5526 5882 -280 1956 148 23 0 chr6 7954570 7954875 -174460367 + AluSx SINE Alu 1 312 0 363 167 211 0 chr6 7955563 7955653 -174459589 - L1ME4a LINE L1 -40 6081 5973 299 250 180 57 chr6 7955716 7955944 -174459298 + MIR SINE MIR 7 262 0 1820 254 66 21 chr6 7956422 7957018 -174458224 + HAL1 LINE L1 1464 2089 -418 2123 99 3 78 chr6 7957018 7957352 -174457890 + AluSq SINE Alu 1 309 -4 2649 138 12 39 chr6 7957382 7957704 -174457538 + L1MB3 LINE L1 5700 6006 -177 1620 151 100 0 chr6 7957704 7957983 -174457259 - AluJb SINE Alu -5 307 1 2649 138 12 39 chr6 7957983 7958153 -174457089 + L1MB3 LINE L1 6006 6179 -4 700 161 110 0 chr6 7959626 7959744 -174455498 + FLAM_C SINE Alu 1 131 -2 380 264 125 50 chr6 7959803 7959894 -174455348 + L1ME4a LINE L1 5796 5879 -242 2456 92 0 0 chr6 7959894 7960200 -174455042 + AluSx SINE Alu 1 306 -6 380 264 125 50 chr6 7960200 7960411 -174454831 + L1ME4a LINE L1 5879 6121 0 265 106 0 45 chr6 7960634 7960700 -174454542 + (CAAAAA)n Simple_repeat Simple_repeat 2 64 0 1613 163 64 0 chr6 7960803 7961086 -174454156 - AluJb SINE Alu -11 301 1 225 0 0 0 chr6 7961477 7961502 -174453740 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 467 159 57 0 chr6 7961586 7961674 -174453568 + FLAM_A SINE Alu 48 140 -2 1645 197 10 3 chr6 7961762 7962061 -174453181 + AluJo SINE Alu 1 301 -11 1721 150 34 24 chr6 7963036 7963330 -174451912 - AluJb SINE Alu -15 297 1 1843 156 0 3 chr6 7963894 7964200 -174451042 + AluJb SINE Alu 1 305 0 255 103 0 0 chr6 7965138 7965177 -174450065 + (TG)n Simple_repeat Simple_repeat 2 40 0 2197 128 0 0 chr6 7965639 7965937 -174449305 - AluSx SINE Alu -8 304 7 267 286 29 29 chr6 7966182 7966248 -174448994 + Tigger8 DNA MER2_type 153 221 -445 2517 116 3 6 chr6 7966248 7966610 -174448632 + MER46B DNA MER2_type 1 236 0 267 286 29 29 chr6 7966610 7966648 -174448594 + Tigger8 DNA MER2_type 220 257 -409 21 0 0 0 chr6 7967924 7967945 -174447297 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 7969212 7969240 -174446002 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr6 7969894 7969916 -174445326 + (T)n Simple_repeat Simple_repeat 1 22 0 195 129 0 0 chr6 7970974 7971005 -174444237 + (T)n Simple_repeat Simple_repeat 1 31 0 181 319 111 28 chr6 7972228 7972372 -174442870 - L2 LINE L2 -193 3079 2924 190 331 140 0 chr6 7972612 7972748 -174442494 - L2 LINE L2 -685 2629 2475 21 57 0 0 chr6 7972871 7972906 -174442336 + AT_rich Low_complexity Low_complexity 1 35 0 429 227 31 10 chr6 7972999 7973096 -174442146 - MIR SINE MIR -116 146 48 1752 161 0 31 chr6 7973922 7974237 -174441005 - AluJo SINE Alu 0 306 1 2284 84 13 0 chr6 7974489 7974788 -174440454 + AluSg SINE Alu 2 304 -6 181 219 0 0 chr6 7975383 7975415 -174439827 - L2 LINE L2 -12 3260 3229 2476 61 3 0 chr6 7975653 7975949 -174439293 - AluSp SINE Alu -16 297 1 250 274 0 0 chr6 7976251 7976302 -174438940 + polypurine Low_complexity Low_complexity 3 53 0 1708 147 0 55 chr6 7976543 7976855 -174438387 - AluJb SINE Alu -17 295 1 22 0 0 0 chr6 7976863 7976885 -174438357 + AT_rich Low_complexity Low_complexity 1 22 0 2176 108 0 10 chr6 7977845 7978142 -174437100 + AluSx SINE Alu 1 294 -18 2313 98 0 23 chr6 7978778 7979085 -174436157 + AluSx SINE Alu 5 304 -8 455 151 54 0 chr6 7979532 7979625 -174435617 - L1MD3 LINE L1 0 7995 7898 786 154 0 16 chr6 7979637 7979760 -174435482 - FLAM_C SINE Alu -12 131 11 396 0 0 0 chr6 7980583 7980627 -174434615 + (CA)n Simple_repeat Simple_repeat 2 45 0 1629 181 3 37 chr6 7981157 7981455 -174433787 - AluJo SINE Alu -24 288 1 926 201 81 54 chr6 7981687 7981946 -174433296 + L1MC4 LINE L1 7655 7920 -122 648 186 55 125 chr6 7981943 7982188 -174433054 + L1MC4 LINE L1 7827 8042 0 * 601 231 36 34 chr6 7983688 7983865 -174431377 - L1MD3 LINE L1 0 7983 6191 2404 109 0 0 chr6 7983898 7984210 -174431032 + AluSx SINE Alu 1 312 0 1662 156 34 30 chr6 7985008 7985303 -174429939 - AluJb SINE Alu -5 307 12 2109 123 0 7 chr6 7987451 7987752 -174427490 - AluSg SINE Alu -11 299 1 974 84 0 63 chr6 7990456 7990598 -174424644 - AluSq/x SINE Alu -180 133 1 1797 110 23 0 chr6 7991058 7991321 -174423921 + L1MA4 LINE L1 6027 6295 -5 2221 84 3 17 chr6 7991363 7991661 -174423581 + AluSx SINE Alu 1 294 -18 2324 87 3 19 chr6 7992187 7992498 -174422744 + L1PA13 LINE L1 5858 6163 0 1172 217 18 5 chr6 7993118 7993339 -174421903 - MER58A DNA MER1_type 0 224 1 2311 102 3 0 chr6 7996053 7996347 -174418895 + AluSp SINE Alu 1 295 -18 21 0 0 0 chr6 7997677 7997698 -174417544 + AT_rich Low_complexity Low_complexity 1 21 0 194 281 16 31 chr6 7998939 7999003 -174416239 - MIR3 SINE MIR -136 72 10 1533 129 141 0 chr6 7999235 7999483 -174415759 - MER7A DNA MER2_type -6 340 60 755 156 170 22 chr6 7999484 7999619 -174415623 + FRAM SINE Alu 1 155 -11 267 173 0 0 chr6 7999619 7999671 -174415571 + (TG)n Simple_repeat Simple_repeat 1 52 0 365 192 14 27 chr6 7999671 7999744 -174415498 - MER7A DNA MER2_type -275 73 2 2109 200 39 33 chr6 7999745 7999797 -174415445 + L1MA9 LINE L1 5782 5832 -480 2512 73 0 3 chr6 7999797 8000100 -174415142 + AluSg SINE Alu 1 302 -8 2109 200 39 33 chr6 8000100 8000537 -174414705 + L1MA9 LINE L1 5832 6274 -38 372 200 118 0 chr6 8001492 8001577 -174413665 + MER103 DNA DNA 4 98 -68 1628 164 52 44 chr6 8002390 8002756 -174412486 - L1MB8 LINE L1 -225 5953 5585 234 0 0 0 chr6 8003822 8003848 -174411394 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2046 107 4 0 chr6 8003852 8004122 -174411120 - AluSp SINE Alu -36 277 7 219 295 0 26 chr6 8004416 8004494 -174410748 + CT-rich Low_complexity Low_complexity 5 80 0 339 349 16 8 chr6 8005522 8005651 -174409591 - MIR SINE MIR -62 146 17 252 0 0 0 chr6 8008640 8008668 -174406574 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 135 56 0 chr6 8008668 8008757 -174406485 + (TA)n Simple_repeat Simple_repeat 2 95 0 647 204 74 32 chr6 8014159 8014461 -174400781 - MLT1B LTR MaLR 0 390 1 2408 88 0 0 chr6 8014830 8015127 -174400115 + AluSg SINE Alu 1 297 -13 1964 257 137 44 chr6 8015424 8016509 -174398733 + L1MC4 LINE L1 6831 8016 -26 2213 106 0 0 chr6 8017196 8017497 -174397745 + AluJb SINE Alu 1 301 -11 553 213 81 0 chr6 8018199 8018335 -174396907 - MIR SINE MIR -59 203 57 329 297 82 61 chr6 8018616 8018965 -174396277 - L2 LINE L2 -218 3054 2694 * 859 239 5 50 chr6 8018962 8019184 -174396058 - MIR SINE MIR 0 262 51 567 289 186 48 chr6 8019232 8020081 -174395161 - L2 LINE L2 -650 2664 1699 22 0 0 0 chr6 8020176 8020198 -174395044 + AT_rich Low_complexity Low_complexity 1 22 0 526 288 108 9 chr6 8020986 8021198 -174394044 + MIR SINE MIR 1 233 -29 22 0 0 0 chr6 8021875 8021897 -174393345 + AT_rich Low_complexity Low_complexity 1 22 0 314 234 13 26 chr6 8021904 8021981 -174393261 + Tigger5 DNA MER2_type 1 76 -2247 540 103 13 13 chr6 8022030 8022108 -174393134 + Tigger5 DNA MER2_type 2245 2322 -1 2189 108 0 7 chr6 8022482 8022777 -174392465 + AluSx SINE Alu 1 293 -19 359 256 0 0 chr6 8023401 8023479 -174391763 - MIR3 SINE MIR -6 202 125 275 252 98 26 chr6 8023567 8023721 -174391521 - MIR SINE MIR -50 212 45 2251 86 3 10 chr6 8024366 8024667 -174390575 - AluY SINE Alu -12 299 1 2313 107 0 0 chr6 8024713 8025012 -174390230 + AluSx SINE Alu 1 299 -13 378 289 23 47 chr6 8025556 8025684 -174389558 + MIR3 SINE MIR 50 174 -34 819 126 80 7 chr6 8025799 8025950 -174389292 + L1MB3 LINE L1 6019 6180 -3 1835 162 8 64 chr6 8028157 8028351 -174386891 - MER2 DNA MER2_type -1 344 178 2011 156 3 0 chr6 8028351 8028653 -174386589 - AluSx SINE Alu -9 303 1 1835 162 8 64 chr6 8028653 8028816 -174386426 - MER2 DNA MER2_type -167 178 7 281 320 76 41 chr6 8029484 8029681 -174385561 + MIR SINE MIR 3 206 -56 273 141 84 42 chr6 8030437 8030508 -174384734 - L1MC5 LINE L1 -51 7910 7837 659 208 50 134 chr6 8031373 8031745 -174383497 - L1MD3 LINE L1 -1 8035 7709 1033 55 78 0 chr6 8032231 8032359 -174382883 - MER85 DNA T2_type -1 138 1 229 226 19 0 chr6 8033013 8033066 -174382176 + CT-rich Low_complexity Low_complexity 4 57 0 274 303 140 28 chr6 8033221 8033399 -174381843 + L2 LINE L2 2286 2483 -831 1858 163 3 0 chr6 8033537 8033825 -174381417 + AluJb SINE Alu 1 289 -23 459 320 105 31 chr6 8033943 8034237 -174381005 + L2 LINE L2 2871 3186 -86 2285 93 10 3 chr6 8034775 8035085 -174380157 + AluSq SINE Alu 1 312 -1 280 331 54 6 chr6 8035825 8035991 -174379251 + L1ME2 LINE L1 5734 5907 -257 21 0 0 0 chr6 8036181 8036202 -174379040 + AT_rich Low_complexity Low_complexity 1 21 0 325 298 33 26 chr6 8036246 8036263 -174378979 - L1MA10 LINE L1 -1 6333 6317 968 239 95 20 chr6 8036263 8036611 -174378631 - L1ME1 LINE L1 -8 6158 5785 265 209 30 15 chr6 8036946 8037013 -174378229 - MER116 DNA Mariner -6 74 7 206 306 118 0 chr6 8037324 8037409 -174377833 + L2 LINE L2 3126 3220 -52 1394 162 4 9 chr6 8037579 8037808 -174377434 - AluJo SINE Alu -56 256 29 640 139 165 26 chr6 8037857 8037972 -174377270 - FLAM_C SINE Alu -2 131 1 2006 139 27 0 chr6 8039657 8039958 -174375284 + AluJo SINE Alu 1 309 -3 2147 138 55 17 chr6 8040033 8040381 -174374861 + MER46B DNA MER2_type 1 236 0 3469 213 36 46 chr6 8040443 8040996 -174374246 - MER21B LTR ERV1 -31 832 290 2177 112 7 0 chr6 8040996 8041290 -174373952 + AluSx SINE Alu 1 296 -16 3469 213 36 46 chr6 8041290 8041577 -174373665 - MER21B LTR ERV1 -573 290 1 223 322 50 41 chr6 8041584 8041705 -174373537 + L2 LINE L2 2574 2695 -619 1141 88 0 0 chr6 8041866 8042013 -174373229 + AluSg/x SINE Alu 151 297 -13 2382 295 188 22 chr6 8042245 8042866 -174372376 + L2 LINE L2 1500 2017 -1296 2306 78 14 0 chr6 8042866 8043162 -174372080 - AluSq SINE Alu -13 300 1 2382 295 188 22 chr6 8043162 8044096 -174371146 + L2 LINE L2 2017 3313 0 212 261 39 100 chr6 8045407 8045537 -174369705 + L2 LINE L2 1333 1454 -1860 284 339 125 0 chr6 8045582 8045774 -174369468 - MIR SINE MIR -16 246 31 181 300 0 0 chr6 8045776 8045836 -174369406 + L2 LINE L2 3207 3266 -6 906 105 8 0 chr6 8046242 8046366 -174368876 + AluJb SINE Alu 7 131 -181 1566 173 0 91 chr6 8046544 8046902 -174368340 - MLT2D LTR ERVL 0 414 94 462 252 9 0 chr6 8047500 8047611 -174367631 - MLT2D LTR ERVL -302 112 1 248 26 26 51 chr6 8047817 8047856 -174367386 - MER69 DNA AcHobo -42 2484 2447 1511 191 0 29 chr6 8047860 8048133 -174367109 + AluJo SINE Alu 3 267 -45 965 270 9 0 chr6 8048487 8048709 -174366533 - MER58A DNA MER1_type 0 224 1 2213 122 3 0 chr6 8049748 8050052 -174365190 + AluSx SINE Alu 1 305 -7 2727 121 33 51 chr6 8051262 8051715 -174363527 + MER65A LTR ERV1 1 445 0 709 300 58 8 chr6 8051721 8051964 -174363278 - MIR SINE MIR -4 258 4 287 146 18 0 chr6 8052326 8052381 -174362861 + T-rich Low_complexity Low_complexity 4 59 0 1826 166 13 7 chr6 8052383 8052685 -174362557 - AluSx SINE Alu -8 304 1 2051 138 0 16 chr6 8053104 8053422 -174361820 - AluSq SINE Alu 0 313 1 228 341 0 24 chr6 8053431 8053513 -174361729 + LTR67 LTR ERVL 98 177 -380 * 796 269 46 79 chr6 8053449 8053684 -174361558 + MLT1J LTR MaLR 110 326 -185 1517 210 119 44 chr6 8053684 8053751 -174361491 - MLT1C LTR MaLR -4 463 402 1575 66 0 0 chr6 8053751 8053934 -174361308 + AluY SINE Alu 1 183 -128 1517 210 119 44 chr6 8053934 8054295 -174360947 - MLT1C LTR MaLR -65 402 3 796 269 46 79 chr6 8054295 8054475 -174360767 + MLT1J LTR MaLR 326 511 0 473 0 0 17 chr6 8054479 8054537 -174360705 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 2436 76 0 0 chr6 8054706 8055010 -174360232 + AluY SINE Alu 1 304 -7 230 281 0 16 chr6 8055163 8055227 -174360015 + GA-rich Low_complexity Low_complexity 1 63 0 1192 167 9 14 chr6 8056684 8056894 -174358348 + MLT1A1 LTR MaLR 18 226 -139 721 279 73 0 chr6 8056884 8057088 -174358154 - MER115 DNA AcHobo -467 226 8 * 1438 282 61 25 chr6 8058850 8059372 -174355870 + MLT1H1 LTR MaLR 15 555 0 198 103 0 0 chr6 8059743 8059772 -174355470 + (A)n Simple_repeat Simple_repeat 1 29 0 1976 120 14 3 chr6 8060403 8060687 -174354555 - AluSx SINE Alu -25 287 1 25 31 0 0 chr6 8061409 8061441 -174353801 + AT_rich Low_complexity Low_complexity 1 32 0 270 238 221 16 chr6 8061498 8061574 -174353668 - MIR SINE MIR -14 248 189 2231 81 7 0 chr6 8061574 8061858 -174353384 - AluY SINE Alu 0 311 26 270 238 221 16 chr6 8061858 8061903 -174353339 - MIR SINE MIR -73 189 102 357 278 90 47 chr6 8061905 8062117 -174353125 - MLT1K LTR MaLR -27 561 341 372 268 31 0 chr6 8062438 8062535 -174352707 - MIR SINE MIR -158 104 5 1277 109 0 0 chr6 8062570 8062735 -174352507 + AluSq SINE Alu 1 165 -148 819 268 180 42 chr6 8062818 8063341 -174351901 - MLT1G1 LTR MaLR 0 595 1 2609 108 19 95 chr6 8063610 8063856 -174351386 - MSTC LTR MaLR 0 428 232 2121 118 0 10 chr6 8063856 8064161 -174351081 + AluSc SINE Alu 1 302 -7 2609 108 19 95 chr6 8064161 8064377 -174350865 - MSTC LTR MaLR -196 232 1 1557 232 43 0 chr6 8064668 8064995 -174350247 - Tigger7 DNA MER2_type -391 342 2 2027 174 43 5 chr6 8064995 8065369 -174349873 + L1MB1 LINE L1 5781 6168 0 865 210 10 25 chr6 8066447 8066647 -174348595 - MLT1B LTR MaLR 0 390 194 2137 131 0 3 chr6 8067094 8067400 -174347842 + AluSx SINE Alu 1 305 -7 14006 120 53 39 chr6 8071040 8071596 -174343646 + Tigger1 DNA MER2_type 1 548 -1870 1785 142 55 0 chr6 8071596 8071871 -174343371 + AluJb SINE Alu 1 290 -22 14006 120 53 39 chr6 8071871 8072431 -174342811 + Tigger1 DNA MER2_type 548 1099 -1319 2536 61 0 3 chr6 8072431 8072742 -174342500 + AluY SINE Alu 2 311 0 14006 120 53 39 chr6 8072742 8073050 -174342192 + Tigger1 DNA MER2_type 1099 1401 -1017 2420 65 0 0 chr6 8073050 8073342 -174341900 + AluY SINE Alu 1 292 -19 14006 120 53 39 chr6 8073342 8074288 -174340954 + Tigger1 DNA MER2_type 1401 2405 -13 265 250 100 50 chr6 8075153 8075273 -174339969 + L2 LINE L2 3165 3290 -23 247 318 0 0 chr6 8075749 8075812 -174339430 - MLT1L LTR MaLR -552 63 1 655 194 215 26 chr6 8076068 8076259 -174338983 - MIR SINE MIR 0 262 36 443 193 73 0 chr6 8076372 8076484 -174338758 + L1MB7 LINE L1 6019 6158 -22 237 352 145 11 chr6 8076514 8076693 -174338549 + MIR SINE MIR 49 251 -11 2067 122 0 3 chr6 8076871 8077157 -174338085 + AluSg SINE Alu 16 300 -10 955 174 6 12 chr6 8077233 8077394 -174337848 + FRAM SINE Alu 1 155 -21 2619 48 0 3 chr6 8077402 8077711 -174337531 + AluY SINE Alu 1 308 -3 303 219 156 0 chr6 8077849 8077945 -174337297 - L2 LINE L2 -15 3298 3188 2148 119 3 0 chr6 8078908 8079203 -174336039 + AluSp SINE Alu 1 296 -17 416 209 37 4 chr6 8080817 8080954 -174334288 - MER5A DNA MER1_type 0 189 1 2310 91 0 36 chr6 8081349 8081657 -174333585 - AluSx SINE Alu -15 297 1 2390 74 10 0 chr6 8081726 8082023 -174333219 - AluSp SINE Alu -12 301 2 1990 189 64 11 chr6 8082535 8082975 -174332267 + L1MD2 LINE L1 5895 6357 -2 473 244 9 43 chr6 8083349 8083464 -174331778 + L2 LINE L2 3155 3265 -7 694 256 67 0 chr6 8083611 8083791 -174331451 + MIR SINE MIR 66 257 -5 1063 248 58 111 chr6 8084036 8084569 -174330673 - MER21B LTR ERV1 -335 528 24 1575 100 256 0 chr6 8084730 8085000 -174330242 + MER44D DNA MER2_type 1 609 0 33 43 0 0 chr6 8086599 8086646 -174328596 + AT_rich Low_complexity Low_complexity 1 47 0 446 278 85 14 chr6 8086725 8086943 -174328299 - L1ME LINE L1 -425 5745 5509 183 302 0 63 chr6 8087515 8087578 -174327664 + L2 LINE L2 2446 2504 -810 213 319 151 8 chr6 8087759 8087878 -174327364 + L2 LINE L2 2809 2944 -328 28 71 0 0 chr6 8088365 8088421 -174326821 + AT_rich Low_complexity Low_complexity 1 56 0 2162 109 13 10 chr6 8088549 8088852 -174326390 + AluSx SINE Alu 1 304 -8 610 359 106 21 chr6 8088960 8089578 -174325664 + L2 LINE L2 2447 3132 -181 261 254 0 0 chr6 8089578 8089637 -174325605 - MLT1E1 LTR MaLR 0 654 596 303 330 11 0 chr6 8089666 8089760 -174325482 - L2 LINE L2 -12 3301 3207 246 275 94 22 chr6 8090758 8090896 -174324346 - MLT1J LTR MaLR 0 511 364 959 154 0 0 chr6 8090965 8091108 -174324134 - AluJb SINE Alu -12 300 158 21 0 0 0 chr6 8091279 8091300 -174323942 + AT_rich Low_complexity Low_complexity 1 21 0 909 156 0 15 chr6 8091300 8091435 -174323807 - FLAM_C SINE Alu 0 133 1 267 276 0 0 chr6 8091437 8091495 -174323747 - MLT1J LTR MaLR -212 299 242 283 299 75 108 chr6 8091627 8091841 -174323401 - L2 LINE L2 -87 3185 2979 2352 100 0 6 chr6 8092427 8092738 -174322504 - AluSq SINE Alu -4 309 1 1948 177 74 26 chr6 8093438 8093816 -174321426 - MSTD LTR MaLR 0 396 1 2084 117 3 10 chr6 8094233 8094523 -174320719 - AluSx SINE Alu -24 288 1 372 320 73 21 chr6 8094857 8095091 -174320151 + HAL1b LINE L1 216 461 -887 252 301 44 44 chr6 8095103 8095239 -174320003 + HAL1b LINE L1 505 640 -708 472 241 63 44 chr6 8095620 8095778 -174319464 + MER46A DNA MER2_type 2 162 -74 3404 148 18 12 chr6 8095970 8096529 -174318713 - Tigger1 DNA MER2_type -2 2416 1855 799 91 50 0 chr6 8096521 8096642 -174318600 - Tigger1 DNA MER2_type -1895 523 397 * 11623 116 29 32 chr6 8096638 8096760 -174318482 - Tigger1 DNA MER2_type -557 1861 1740 2174 93 7 20 chr6 8096760 8097062 -174318180 - AluY SINE Alu -13 298 1 11623 116 29 32 chr6 8097062 8097409 -174317833 - Tigger1 DNA MER2_type -678 1740 1393 2540 27 20 3 chr6 8097409 8097703 -174317539 + AluY SINE Alu 4 302 -9 11623 116 29 32 chr6 8097703 8098474 -174316768 - Tigger1 DNA MER2_type -1025 1393 621 1968 99 8 0 chr6 8098474 8098727 -174316515 - AluSc SINE Alu -16 293 39 11623 116 29 32 chr6 8098727 8098770 -174316472 - Tigger1 DNA MER2_type -1797 621 579 2174 116 0 7 chr6 8098770 8099071 -174316171 + AluSx SINE Alu 3 301 -11 11623 116 29 32 chr6 8099071 8099629 -174315613 - Tigger1 DNA MER2_type -1839 579 24 217 300 0 0 chr6 8099651 8099663 -174315579 + (TA)n Simple_repeat Simple_repeat 1 12 -58 1988 140 3 3 chr6 8099663 8099955 -174315287 + AluJb SINE Alu 3 294 -18 217 300 0 0 chr6 8099955 8100012 -174315230 + (TA)n Simple_repeat Simple_repeat 11 70 0 233 309 41 0 chr6 8100067 8100164 -174315078 + L1MC4a LINE L1 6057 6157 -1651 2381 103 0 0 chr6 8100274 8100584 -174314658 - AluSq SINE Alu -3 310 1 291 54 0 0 chr6 8100595 8100632 -174314610 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 2236 110 13 3 chr6 8100634 8100942 -174314300 - AluSx SINE Alu -1 311 1 24 32 0 0 chr6 8101016 8101047 -174314195 + AT_rich Low_complexity Low_complexity 1 31 0 924 267 89 36 chr6 8101135 8101528 -174313714 + L1MC4a LINE L1 6502 6915 -893 897 185 11 85 chr6 8101569 8101829 -174313413 + L1MC5 LINE L1 6913 7153 -808 1314 230 54 16 chr6 8101841 8102228 -174313014 + L1MC5 LINE L1 7255 7656 -305 1291 157 0 0 chr6 8102270 8102461 -174312781 + AluJb SINE Alu 106 296 -16 360 0 0 0 chr6 8102472 8102512 -174312730 + (TG)n Simple_repeat Simple_repeat 1 40 0 1689 151 3 63 chr6 8102595 8102912 -174312330 + AluJo SINE Alu 7 304 -8 621 203 68 34 chr6 8102912 8103089 -174312153 + L1MC5 LINE L1 7718 7900 -61 2499 197 55 35 chr6 8103222 8103300 -174311942 - L1MD3 LINE L1 0 7995 7920 2844 79 6 6 chr6 8103300 8103653 -174311589 - THE1A LTR MaLR 0 355 3 12641 92 2 1 chr6 8103655 8105233 -174310009 - THE1A-int LTR MaLR 0 1580 1 2819 52 25 44 chr6 8105233 8105365 -174309877 - THE1A LTR MaLR 0 355 222 2396 95 0 7 chr6 8105365 8105671 -174309571 - AluSg SINE Alu -6 304 1 2819 52 25 44 chr6 8105671 8105900 -174309342 - THE1A LTR MaLR -133 222 1 2499 197 55 35 chr6 8105900 8106395 -174308847 - L1MD3 LINE L1 -74 7921 7406 232 229 0 0 chr6 8106421 8106469 -174308773 - MLT1F1 LTR MaLR -442 125 78 2685 204 14 40 chr6 8106514 8106920 -174308322 - MER68 LTR ERV1 0 562 174 1702 109 4 0 chr6 8106920 8107149 -174308093 + MER30 DNA MER1_type 1 230 0 2685 204 14 40 chr6 8107149 8107319 -174307923 - MER68 LTR ERV1 -388 174 1 2156 81 0 0 chr6 8107727 8108034 -174307208 + AluY SINE Alu 1 307 0 2344 102 0 0 chr6 8108061 8108366 -174306876 + AluY SINE Alu 1 305 -6 2080 119 7 3 chr6 8108801 8109095 -174306147 - AluSc SINE Alu -14 295 1 314 369 40 25 chr6 8109339 8109537 -174305705 - MIR SINE MIR -40 222 22 595 299 38 38 chr6 8109596 8109857 -174305385 + L2 LINE L2 2019 2279 -1035 475 267 7 15 chr6 8109844 8109979 -174305263 + L2 LINE L2 3180 3313 0 * 12949 168 87 21 chr6 8110081 8110889 -174304353 - L1MA4 LINE L1 0 6300 5546 2269 79 0 0 chr6 8110889 8111168 -174304074 + AluY SINE Alu 1 279 -32 207 0 0 0 chr6 8111170 8111193 -174304049 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 12949 168 87 21 chr6 8111193 8114134 -174301108 - L1MA4 LINE L1 -754 5546 2286 405 183 0 37 chr6 8114145 8114227 -174301015 + L1 LINE L1 2630 2708 -3438 383 113 126 24 chr6 8114232 8114315 -174300927 - L1M3f LINE L1 -3890 3675 3595 6899 124 25 25 chr6 8114329 8114348 -174300894 - L1P5 LINE L1 -664 5487 5470 4729 75 33 75 chr6 8114348 8115053 -174300189 - L1PB1 LINE L1 -7 6144 5470 * 11949 55 0 0 chr6 8115035 8117213 -174298029 - L1PA6 LINE L1 0 6154 3973 6899 124 25 25 chr6 8115053 8118794 -174296448 - L1P5 LINE L1 -681 5470 3889 1988 122 24 0 chr6 8118795 8119083 -174296159 - AluSq SINE Alu -18 295 1 6491 166 28 9 chr6 8119085 8119215 -174296027 - L1M3f LINE L1 -4158 2407 2281 2262 109 0 0 chr6 8119215 8119508 -174295734 + AluSg SINE Alu 1 293 -17 6491 166 28 9 chr6 8119508 8120522 -174294720 - L1M3f LINE L1 -4284 2281 1241 28 29 0 0 chr6 8121295 8121330 -174293912 + AT_rich Low_complexity Low_complexity 1 35 0 191 255 0 59 chr6 8121477 8121528 -174293714 - L2 LINE L2 -81 3191 3144 2221 90 38 0 chr6 8121833 8122121 -174293121 - AluSx SINE Alu -13 299 1 199 261 54 63 chr6 8122187 8122298 -174292944 - MIR SINE MIR -46 216 107 310 185 0 0 chr6 8122311 8122365 -174292877 + L2 LINE L2 3217 3270 -2 464 277 118 40 chr6 8122568 8122809 -174292433 + MIR SINE MIR 3 262 0 182 302 93 93 chr6 8124692 8124821 -174290421 + MIR SINE MIR 16 144 -64 2089 115 37 0 chr6 8125133 8125429 -174289813 - AluSx SINE Alu -5 307 1 31 44 0 0 chr6 8125475 8125520 -174289722 + AT_rich Low_complexity Low_complexity 1 45 0 283 295 0 0 chr6 8125804 8125865 -174289377 + (CA)n Simple_repeat Simple_repeat 1 61 0 1777 99 0 0 chr6 8126068 8126291 -174288951 - AluSg/x SINE Alu -15 297 75 2860 6 0 0 chr6 8126789 8127100 -174288142 + AluYa5 SINE Alu 1 311 0 922 153 74 60 chr6 8127315 8127531 -174287711 - MER20 DNA MER1_type 0 219 1 3051 164 7 17 chr6 8127909 8128038 -174287204 - L1MB3 LINE L1 0 6183 6054 2302 101 0 22 chr6 8128038 8128356 -174286886 - AluSq SINE Alu -2 311 1 3051 164 7 17 chr6 8128356 8128811 -174286431 - L1MB3 LINE L1 -129 6054 5605 22 0 0 0 chr6 8129536 8129558 -174285684 + AT_rich Low_complexity Low_complexity 1 22 0 2318 100 0 3 chr6 8130103 8130403 -174284839 + AluSq SINE Alu 1 299 -14 384 294 110 35 chr6 8130918 8131146 -174284096 - MIR SINE MIR -16 246 2 247 357 56 16 chr6 8131827 8131953 -174283289 + MIR SINE MIR 20 150 -112 201 39 0 0 chr6 8132265 8132291 -174282951 + (TG)n Simple_repeat Simple_repeat 2 27 0 725 96 0 0 chr6 8132291 8132385 -174282857 - AluSg/x SINE Alu -26 283 190 1960 122 16 48 chr6 8132773 8133084 -174282158 - AluSx SINE Alu -7 305 5 2183 125 0 0 chr6 8133334 8133629 -174281613 - AluSx SINE Alu -17 295 1 2232 119 0 0 chr6 8135099 8135394 -174279848 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr6 8136368 8136412 -174278830 + AT_rich Low_complexity Low_complexity 1 44 0 2260 132 0 0 chr6 8136429 8136740 -174278502 - AluSx SINE Alu -1 311 1 459 273 76 41 chr6 8136970 8137314 -174277928 - L1MEd LINE L1 -3316 2813 2458 226 109 0 43 chr6 8137335 8137381 -174277861 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 376 303 116 49 chr6 8137381 8137505 -174277737 - L1MEd LINE L1 -3792 2367 2253 2396 75 0 3 chr6 8137505 8137799 -174277443 + AluSc SINE Alu 1 293 -16 376 303 116 49 chr6 8137799 8138006 -174277236 - L1MEd LINE L1 -3906 2253 2017 961 264 71 43 chr6 8138295 8139125 -174276117 - L1MEd LINE L1 -4752 1558 660 185 204 68 0 chr6 8139444 8139488 -174275754 + L2 LINE L2 361 407 -2907 790 243 129 38 chr6 8139513 8139854 -174275388 + MLT1A2 LTR MaLR 1 372 -2 207 0 0 0 chr6 8140721 8140744 -174274498 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1644 99 0 0 chr6 8141025 8141237 -174274005 - AluSq SINE Alu -6 307 96 705 188 0 15 chr6 8141251 8141384 -174273858 - AluSp SINE Alu -182 131 1 649 117 27 0 chr6 8142086 8142197 -174273045 + L1MA7 LINE L1 6173 6286 -5 908 135 0 0 chr6 8142202 8142328 -174272914 + FLAM_C SINE Alu 2 127 -6 24 32 0 0 chr6 8143148 8143179 -174272063 + AT_rich Low_complexity Low_complexity 1 31 0 2083 119 16 19 chr6 8143671 8143982 -174271260 + AluSx SINE Alu 1 310 -2 1226 95 105 0 chr6 8145384 8145574 -174269668 + L1PB1 LINE L1 5938 6147 -4 195 42 0 0 chr6 8146843 8146867 -174268375 + (TG)n Simple_repeat Simple_repeat 2 25 0 241 293 0 0 chr6 8147038 8147096 -174268146 + CT-rich Low_complexity Low_complexity 5 62 0 1338 265 164 20 chr6 8147770 8148367 -174266875 + L2 LINE L2 1662 2344 -970 536 134 34 92 chr6 8148356 8148475 -174266767 + MIR SINE MIR 106 217 -45 * 2404 84 0 3 chr6 8149663 8149961 -174265281 + AluSc SINE Alu 1 297 -12 565 121 33 11 chr6 8150686 8150777 -174264465 + AluJo SINE Alu 42 134 -178 362 303 117 6 chr6 8152138 8152300 -174262942 - MIR SINE MIR -10 252 73 487 314 100 18 chr6 8152314 8152534 -174262708 + MIR SINE MIR 15 252 -10 513 301 159 40 chr6 8153737 8153769 -174261473 + MIR SINE MIR 3 30 -232 2147 137 0 0 chr6 8153769 8154075 -174261167 + AluSx SINE Alu 1 306 -6 513 301 159 40 chr6 8154075 8154268 -174260974 + MIR SINE MIR 30 255 -7 186 333 137 39 chr6 8154313 8154466 -174260776 - MIR SINE MIR -60 202 35 1957 153 13 7 chr6 8155002 8155310 -174259932 - AluJo SINE Alu -2 310 1 539 280 125 25 chr6 8155804 8156125 -174259117 + L1MC4a LINE L1 5540 5892 -1916 2356 79 10 0 chr6 8156297 8156589 -174258653 - AluY SINE Alu -16 295 1 30 59 0 0 chr6 8158123 8158174 -174257068 + AT_rich Low_complexity Low_complexity 1 51 0 862 194 0 0 chr6 8158247 8158407 -174256835 + MER3 DNA MER1_type 1 160 -49 2297 106 3 3 chr6 8158578 8158889 -174256353 + AluSq SINE Alu 1 311 -2 2399 77 3 6 chr6 8163584 8163897 -174251345 - AluSp SINE Alu -1 312 1 384 298 17 15 chr6 8164133 8164274 -174250968 + MIR3 SINE MIR 56 196 -12 357 255 99 99 chr6 8164971 8165293 -174249949 + L1ME3A LINE L1 560 881 -5189 382 226 20 92 chr6 8165297 8165427 -174249815 + L1ME3A LINE L1 898 882 -5096 2281 117 3 0 chr6 8165427 8165734 -174249508 + AluSx SINE Alu 1 308 -4 382 226 20 92 chr6 8165734 8165939 -174249303 + L1ME3A LINE L1 881 1099 -4879 503 314 173 7 chr6 8166031 8166331 -174248911 + L1ME3A LINE L1 1377 1685 -838 2158 112 7 0 chr6 8166499 8166794 -174248448 - AluSx SINE Alu -15 297 1 2309 103 3 6 chr6 8167045 8167356 -174247886 - AluSp SINE Alu -3 310 1 1392 255 129 68 chr6 8167373 8168662 -174246580 + L1ME3A LINE L1 2150 3516 -2564 1481 268 66 29 chr6 8168670 8169229 -174246013 - MLT1E LTR MaLR -13 580 1 431 233 74 81 chr6 8169231 8169502 -174245740 + L1ME3A LINE L1 3513 3781 -2299 * 1658 254 46 65 chr6 8169501 8170342 -174244900 + L1ME3A LINE L1 5227 6051 -53 218 414 69 0 chr6 8170373 8170489 -174244753 - L2 LINE L2 -28 3244 3121 2550 148 16 20 chr6 8170619 8171066 -174244176 + MER65A LTR ERV1 1 445 0 2684 102 53 12 chr6 8171100 8171511 -174243731 - MSTA LTR MaLR 0 428 1 2218 129 0 0 chr6 8172020 8172330 -174242912 + AluSx SINE Alu 1 310 -2 1694 180 32 0 chr6 8172334 8172645 -174242597 + MLT1A1 LTR MaLR 45 365 0 265 294 92 9 chr6 8173254 8173363 -174241879 + MER94 DNA DNA 16 133 -1 2580 155 42 13 chr6 8175038 8175510 -174239732 + MER66B LTR ERV1 1 486 0 1462 203 65 15 chr6 8175989 8176060 -174239182 - MER2 DNA MER2_type -2 342 276 2277 111 0 13 chr6 8176060 8176367 -174238875 + AluSg SINE Alu 1 303 -7 1462 203 65 15 chr6 8176367 8176620 -174238622 - MER2 DNA MER2_type -68 276 2 21 57 0 0 chr6 8177652 8177687 -174237555 + AT_rich Low_complexity Low_complexity 1 35 0 2485 156 2 44 chr6 8178008 8178437 -174236805 + MER47B DNA MER2_type 8 418 0 1256 156 5 18 chr6 8178899 8179117 -174236125 - MSTB LTR MaLR 0 426 212 * 1601 258 48 50 chr6 8179105 8179621 -174235621 - MER21B LTR ERV1 -348 515 1 199 79 53 0 chr6 8180296 8180334 -174234908 + T-rich Low_complexity Low_complexity 3 42 0 577 282 95 26 chr6 8180416 8180689 -174234553 - L2 LINE L2 -1 3312 3021 195 129 0 0 chr6 8181003 8181034 -174234208 + (TCTCCC)n Simple_repeat Simple_repeat 5 35 0 342 262 47 19 chr6 8182093 8182200 -174233042 - L3 LINE CR1 -125 1452 1343 181 273 78 26 chr6 8182321 8182398 -174232844 - L3 LINE CR1 -410 1167 1087 2157 107 0 0 chr6 8182806 8183086 -174232156 - AluSx SINE Alu -32 280 1 309 309 190 4 chr6 8183088 8183266 -174231976 - MIR SINE MIR -37 225 9 1838 156 102 15 chr6 8183292 8183626 -174231616 - MLT1A1 LTR MaLR -2 363 1 631 203 55 1 chr6 8183922 8184065 -174231177 - L1ME2 LINE L1 -2 6332 6022 2056 208 20 20 chr6 8184067 8184523 -174230719 - L1ME2 LINE L1 -239 5925 5470 21 0 0 0 chr6 8184594 8184615 -174230627 + AT_rich Low_complexity Low_complexity 1 21 0 2266 84 0 3 chr6 8184617 8184925 -174230317 + AluY SINE Alu 1 307 0 2202 143 37 69 chr6 8185647 8185921 -174229321 - L1MA9 LINE L1 0 6312 6058 1882 116 60 28 chr6 8185921 8186205 -174229037 - AluSx SINE Alu -19 293 1 2202 143 37 69 chr6 8186205 8186393 -174228849 - L1MA9 LINE L1 -254 6058 5865 544 209 59 44 chr6 8186393 8186647 -174228595 - L1ME2 LINE L1 -733 5445 5189 1028 150 12 0 chr6 8186683 8186850 -174228392 + AluJb SINE Alu 128 296 -16 650 199 23 0 chr6 8186889 8187020 -174228222 - L1MA10 LINE L1 -10 6324 6191 512 157 41 75 chr6 8187027 8187174 -174228068 - L1ME2 LINE L1 -960 5186 5045 22 70 0 0 chr6 8187334 8187377 -174227865 + AT_rich Low_complexity Low_complexity 1 43 0 361 292 94 94 chr6 8187437 8187465 -174227777 + L2 LINE L2 3077 3104 -209 3139 144 49 103 chr6 8187465 8187539 -174227703 + MER73 LTR ERVL 1 77 -567 2291 50 0 0 chr6 8187539 8187816 -174227426 + AluY SINE Alu 1 277 -34 333 0 0 0 chr6 8187817 8187854 -174227388 + (CA)n Simple_repeat Simple_repeat 1 37 0 3139 144 49 103 chr6 8187854 8188209 -174227033 + MER73 LTR ERVL 77 384 -260 2032 125 0 39 chr6 8188209 8188521 -174226721 + AluSx SINE Alu 1 300 -12 3139 144 49 103 chr6 8188521 8188766 -174226476 + MER73 LTR ERVL 384 641 -3 361 292 94 94 chr6 8188766 8188970 -174226272 + L2 LINE L2 3103 3309 -4 1906 129 48 14 chr6 8189563 8189857 -174225385 - AluSg SINE Alu -6 304 1 2416 92 0 13 chr6 8190535 8190851 -174224391 + AluSx SINE Alu 1 312 0 2670 172 42 12 chr6 8191198 8191235 -174224007 - L1MA9 LINE L1 -5 6307 6273 2418 100 0 0 chr6 8191235 8191545 -174223697 + AluSg SINE Alu 1 310 0 2670 172 42 12 chr6 8191545 8192007 -174223235 - L1MA9 LINE L1 -39 6273 5793 265 291 20 20 chr6 8192456 8192607 -174222635 + (TA)n Simple_repeat Simple_repeat 1 151 0 324 0 0 0 chr6 8192618 8192654 -174222588 + (CA)n Simple_repeat Simple_repeat 2 37 0 2098 108 7 14 chr6 8192681 8192978 -174222264 - AluSx SINE Alu -16 296 2 467 199 89 7 chr6 8193071 8193217 -174222025 - L1ME4a LINE L1 -24 6097 5940 310 250 205 19 chr6 8193313 8193469 -174221773 - L1ME4a LINE L1 -238 5883 5699 2259 93 0 7 chr6 8193539 8193841 -174221401 - AluSx SINE Alu -12 300 1 806 214 6 12 chr6 8194632 8194800 -174220442 + FRAM SINE Alu 4 170 -6 189 107 0 0 chr6 8195005 8195033 -174220209 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1706 159 37 0 chr6 8195034 8195305 -174219937 - AluJo SINE Alu -31 281 1 27 0 0 0 chr6 8196347 8196374 -174218868 + AT_rich Low_complexity Low_complexity 1 27 0 1675 165 35 3 chr6 8196671 8196956 -174218286 + AluJo SINE Alu 1 294 -18 260 331 105 0 chr6 8197297 8197421 -174217821 + L2 LINE L2 355 491 -2823 839 128 0 8 chr6 8197584 8197709 -174217533 + FLAM_C SINE Alu 1 124 -19 2131 96 7 0 chr6 8198958 8199274 -174215968 + AluSx SINE Alu 1 318 0 23 33 0 0 chr6 8199330 8199360 -174215882 + AT_rich Low_complexity Low_complexity 1 30 0 480 129 14 0 chr6 8200298 8200368 -174214874 - THE1B LTR MaLR 0 364 294 43915 46 6 1 chr6 8200373 8206477 -174208765 + L1PA4 LINE L1 11 6144 -11 2012 115 19 32 chr6 8206477 8206791 -174208451 - THE1B LTR MaLR -54 310 1 236 310 56 56 chr6 8206900 8207042 -174208200 + MIR SINE MIR 28 169 -93 404 226 75 50 chr6 8207394 8207553 -174207689 + MER46C DNA MER2_type 2 164 -174 3018 127 7 25 chr6 8207808 8208241 -174207001 + MSTC LTR MaLR 1 425 -3 182 270 0 0 chr6 8208282 8208319 -174206923 - L2 LINE L2 -97 3216 3180 883 117 6 28 chr6 8208989 8209169 -174206073 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 448 106 0 0 chr6 8211047 8211113 -174204129 + Alu SINE Alu 237 302 -10 1261 149 91 15 chr6 8211263 8211569 -174203673 - MLT1B LTR MaLR -4 386 1 2074 98 34 10 chr6 8211678 8211973 -174203269 + AluSx SINE Alu 1 302 -10 2091 136 13 0 chr6 8212878 8213187 -174202055 + AluSq SINE Alu 1 313 0 22 0 0 0 chr6 8213298 8213320 -174201922 + AT_rich Low_complexity Low_complexity 1 22 0 2185 122 0 7 chr6 8213884 8214187 -174201055 - AluSx SINE Alu -11 301 1 2378 145 17 3 chr6 8214497 8214856 -174200386 + MLT1A1 LTR MaLR 2 365 0 492 343 72 38 chr6 8215859 8216305 -174198937 + HAL1b LINE L1 132 592 -756 639 192 160 0 chr6 8216351 8216507 -174198735 + MER5A DNA MER1_type 9 189 0 902 217 12 0 chr6 8216656 8216817 -174198425 + MER70A LTR ERVL 1 163 -309 * 2233 192 8 3 chr6 8216812 8217193 -174198049 + MER70A LTR ERVL 90 472 0 31 26 0 0 chr6 8217450 8217488 -174197754 + AT_rich Low_complexity Low_complexity 1 38 0 39072 77 13 11 chr6 8217842 8223968 -174191274 - L1PA6 LINE L1 -2 6152 12 4021 245 70 61 chr6 8223974 8224159 -174191083 - L1MCc LINE L1 -4887 1536 1354 243 0 0 0 chr6 8224159 8224186 -174191056 + (TG)n Simple_repeat Simple_repeat 2 28 0 4021 245 70 61 chr6 8224186 8225887 -174189355 - L1MCc LINE L1 -5069 1354 20 316 311 49 25 chr6 8225946 8226068 -174189174 - MIR SINE MIR -126 136 12 339 211 220 29 chr6 8226092 8226284 -174188958 - L1P4 LINE L1 -370 5796 5572 3968 127 29 8 chr6 8226396 8227012 -174188230 + Tigger2 DNA MER2_type 126 754 -1964 1453 141 24 0 chr6 8227069 8227318 -174187924 + Tigger2 DNA MER2_type 2461 2715 -3 252 143 0 0 chr6 8227318 8227360 -174187882 + (TG)n Simple_repeat Simple_repeat 1 42 0 440 249 67 0 chr6 8227360 8227464 -174187778 + L1MC4 LINE L1 6571 6660 -1125 277 355 81 24 chr6 8227546 8227975 -174187267 - L2 LINE L2 -289 2983 2533 3883 263 72 77 chr6 8228089 8229876 -174185366 + L2 LINE L2 1011 2787 -527 848 283 123 23 chr6 8229901 8230251 -174184991 + L2 LINE L2 2925 3309 -4 226 276 71 0 chr6 8230425 8230523 -174184719 - MER103 DNA DNA -3 163 59 2127 149 3 0 chr6 8230604 8230906 -174184336 + AluSq SINE Alu 1 303 -10 253 268 89 71 chr6 8231461 8231573 -174183669 - MER5B DNA MER1_type -60 118 5 2294 107 0 0 chr6 8232824 8233114 -174182128 + AluSg SINE Alu 1 290 -20 229 219 0 109 chr6 8233282 8233308 -174181934 - L2 LINE L2 0 3272 3245 2300 138 36 17 chr6 8233308 8233664 -174181578 - THE1B LTR MaLR -1 363 1 229 219 0 109 chr6 8233664 8233701 -174181541 - L2 LINE L2 -27 3245 3216 474 297 141 47 chr6 8234171 8234937 -174180305 - L2 LINE L2 -1 3312 2462 563 155 0 0 chr6 8234980 8235064 -174180178 + AluS SINE Alu 2 85 -227 871 286 205 9 chr6 8235074 8235640 -174179602 - L2 LINE L2 -856 2458 1782 277 254 45 55 chr6 8235646 8235756 -174179486 - L2 LINE L2 -1639 1675 1567 1839 191 60 35 chr6 8235758 8236240 -174179002 - MLT1D LTR MaLR -2 503 10 1049 312 204 32 chr6 8236308 8237473 -174177769 - L2 LINE L2 -1842 1472 107 193 367 20 10 chr6 8237728 8237826 -174177416 - L2 LINE L2 -798 2516 2418 200 248 0 70 chr6 8238749 8238878 -174176364 + G-rich Low_complexity Low_complexity 3 122 0 24 32 0 0 chr6 8238979 8239010 -174176232 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr6 8239014 8239034 -174176208 + (CGG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr6 8239220 8239249 -174175993 + GC_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr6 8239382 8239432 -174175810 + GC_rich Low_complexity Low_complexity 1 50 0 1586 185 3 52 chr6 8240804 8241128 -174174114 - AluJo SINE Alu 0 312 5 2458 83 0 0 chr6 8241366 8241666 -174173576 - AluSc SINE Alu -8 301 2 2280 110 3 7 chr6 8243108 8243416 -174171826 - AluSg SINE Alu -3 307 1 1821 151 17 17 chr6 8243423 8243714 -174171528 - AluJo SINE Alu -21 291 1 294 289 103 57 chr6 8244430 8244693 -174170549 - L2 LINE L2 -189 3083 2809 1959 175 62 27 chr6 8247371 8247822 -174167420 - MLT1C LTR MaLR 0 467 1 1692 179 49 9 chr6 8248713 8249059 -174166183 + MLT1A1 LTR MaLR 6 365 0 312 70 0 0 chr6 8250106 8250149 -174165093 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 2084 123 24 0 chr6 8251312 8251604 -174163638 + AluSq SINE Alu 1 299 -14 352 298 50 73 chr6 8252514 8252816 -174162426 - L1ME LINE L1 -316 5805 5511 1592 153 15 23 chr6 8253669 8253930 -174161312 - AluJo SINE Alu -24 288 30 634 184 0 0 chr6 8253931 8254029 -174161213 - AluJ/FLAM SINE Alu -213 99 2 1122 163 62 15 chr6 8254843 8255195 -174160047 + Tigger1 DNA MER2_type 1 2418 0 1396 184 93 25 chr6 8255272 8255550 -174159692 + AluJb SINE Alu 5 301 -11 274 250 133 39 chr6 8256598 8256726 -174158516 - L1ME3A LINE L1 0 6170 6031 2352 94 57 23 chr6 8256798 8257150 -174158092 - THE1B LTR MaLR 0 364 1 1425 264 82 23 chr6 8257209 8257781 -174157461 - L1MC5 LINE L1 -429 7532 6927 265 352 193 0 chr6 8258788 8258933 -174156309 + MIR SINE MIR 77 249 -13 284 298 128 21 chr6 8261509 8261650 -174153592 - L2 LINE L2 0 3313 3158 293 284 60 66 chr6 8264219 8264356 -174150886 + MIR SINE MIR 15 149 -61 287 313 36 27 chr6 8266006 8266118 -174149124 + MER5A DNA MER1_type 6 118 -71 412 304 56 0 chr6 8269763 8269888 -174145354 - MIR SINE MIR -111 151 20 211 246 148 0 chr6 8270645 8270706 -174144536 - L2 LINE L2 0 3313 3244 193 319 42 59 chr6 8271708 8271827 -174143415 - L2 LINE L2 -562 2752 2636 2301 111 0 3 chr6 8272028 8272325 -174142917 - AluSx SINE Alu -12 300 5 220 0 0 79 chr6 8272732 8272770 -174142472 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 382 281 130 54 chr6 8272770 8273024 -174142218 + L1MEd LINE L1 849 3293 -2836 522 269 75 36 chr6 8273044 8273415 -174141827 + L1MEd LINE L1 967 1398 -4869 2793 196 12 55 chr6 8273929 8273991 -174141251 + MLT2B3 LTR ERVL 1 64 -490 1664 181 36 0 chr6 8273991 8274272 -174140970 - AluJo SINE Alu -20 292 2 2793 196 12 55 chr6 8274272 8274786 -174140456 + MLT2B3 LTR ERVL 64 552 -2 382 343 29 43 chr6 8274838 8274884 -174140358 - L2 LINE L2 -228 3085 3040 1789 140 29 32 chr6 8274884 8275192 -174140050 - AluJo SINE Alu -5 307 1 382 343 29 43 chr6 8275192 8275355 -174139887 - L2 LINE L2 -273 3040 2879 637 210 40 65 chr6 8275357 8275605 -174139637 + MLT1J2 LTR MaLR 20 261 -189 1509 252 81 76 chr6 8275867 8276560 -174138682 + MER21B LTR ERV1 13 712 -151 1814 193 23 0 chr6 8276560 8276865 -174138377 + AluJo SINE Alu 1 312 0 1509 252 81 76 chr6 8276865 8276912 -174138330 + MER21B LTR ERV1 712 757 -106 221 300 38 12 chr6 8277724 8277804 -174137438 + MER5A DNA MER1_type 43 124 -65 2108 104 7 4 chr6 8278737 8279017 -174136225 + AluSx SINE Alu 1 281 -31 203 81 54 0 chr6 8280763 8280800 -174134442 + GA-rich Low_complexity Low_complexity 5 43 0 2181 121 7 3 chr6 8282494 8282800 -174132442 + AluSq SINE Alu 1 307 -6 298 254 239 0 chr6 8285246 8285376 -174129866 - MIR SINE MIR -18 244 84 1989 131 28 3 chr6 8285639 8285929 -174129313 - AluSx SINE Alu -15 297 1 1000 276 97 23 chr6 8286021 8286368 -174128874 + MLT1K LTR MaLR 114 502 -86 2424 94 0 0 chr6 8286368 8286677 -174128565 + AluY SINE Alu 1 309 -2 1000 276 97 23 chr6 8286677 8286771 -174128471 + MLT1K LTR MaLR 502 588 0 417 95 0 0 chr6 8288561 8288624 -174126618 - Alu SINE Alu -10 302 240 287 288 12 62 chr6 8289414 8289574 -174125668 - MIR SINE MIR -50 212 61 198 280 174 8 chr6 8290952 8291084 -174124158 - MIR SINE MIR -62 200 47 1877 161 0 7 chr6 8291281 8291579 -174123663 + AluJb SINE Alu 1 296 -16 2861 3 0 0 chr6 8292770 8293070 -174122172 + AluYa5 SINE Alu 1 300 -11 234 0 0 0 chr6 8293521 8293547 -174121695 + (T)n Simple_repeat Simple_repeat 1 26 0 679 148 60 176 chr6 8293709 8293839 -174121403 - MIR SINE MIR -22 240 151 1558 142 127 0 chr6 8293839 8294107 -174121135 + AluJb SINE Alu 1 302 0 679 148 60 176 chr6 8294107 8294226 -174121016 - MIR SINE MIR -111 151 20 1042 164 22 6 chr6 8294230 8294413 -174120829 - MER5A DNA MER1_type 0 189 4 1982 128 24 0 chr6 8294861 8295149 -174120093 - AluSx SINE Alu -17 295 1 225 125 0 42 chr6 8295321 8295369 -174119873 - L1MA3 LINE L1 0 6305 6260 23 54 0 0 chr6 8297044 8297081 -174118161 + AT_rich Low_complexity Low_complexity 1 37 0 1747 172 3 17 chr6 8297081 8297372 -174117870 - AluJo SINE Alu -24 288 2 2886 232 90 28 chr6 8297707 8298813 -174116429 + L1MB3 LINE L1 3757 4931 -1215 328 198 37 0 chr6 8299248 8299329 -174115913 + L1MB4 LINE L1 6096 6179 -1 1373 93 0 0 chr6 8299350 8299533 -174115709 + AluY SINE Alu 129 311 0 293 235 0 0 chr6 8299734 8299802 -174115440 + HsTC2 DNA Tc2 232 299 -1599 * 671 302 90 18 chr6 8299790 8300177 -174115065 + HsTC2 DNA Tc2 477 891 -1007 1116 241 122 105 chr6 8300959 8301666 -174113576 - LTR8A LTR ERV1 -7 720 2 1289 193 35 0 chr6 8305354 8305608 -174109634 + L1MA9 LINE L1 5728 5990 -322 808 113 60 65 chr6 8305612 8305780 -174109462 + L1MA9 LINE L1 6146 6312 0 249 108 0 0 chr6 8306206 8306243 -174108999 + (A)n Simple_repeat Simple_repeat 1 37 0 613 225 86 91 chr6 8307016 8307546 -174107696 + MLT1F1 LTR MaLR 84 567 0 3642 161 24 5 chr6 8309695 8310333 -174104909 + L1MB3 LINE L1 5490 6139 -44 937 164 7 0 chr6 8310335 8310481 -174104761 + FRAM SINE Alu 1 146 -30 259 231 13 128 chr6 8310625 8310701 -174104541 + L1M4 LINE L1 3964 4014 -2132 2701 40 0 0 chr6 8310701 8311003 -174104239 - AluY SINE Alu -9 302 1 259 231 13 128 chr6 8311003 8311082 -174104160 + L1M4 LINE L1 4014 4101 -2045 1719 145 59 31 chr6 8311288 8311612 -174103630 - MER44D DNA MER2_type -6 603 1 423 293 114 37 chr6 8311669 8311868 -174103374 - L1M4 LINE L1 -2575 3571 3336 2144 105 19 0 chr6 8311868 8312183 -174103059 - L1PB1 LINE L1 -3 6148 5828 423 293 114 37 chr6 8312183 8312307 -174102935 - L1M4 LINE L1 -2810 3336 3223 1042 230 21 60 chr6 8313011 8313346 -174101896 - L1MD2 LINE L1 -10 6349 6028 21 0 0 0 chr6 8313443 8313464 -174101778 + AT_rich Low_complexity Low_complexity 1 21 0 2157 106 10 13 chr6 8313526 8313828 -174101414 + AluSx SINE Alu 1 301 -11 2160 61 82 0 chr6 8314265 8314544 -174100698 + AluY SINE Alu 1 302 -9 383 303 65 40 chr6 8314689 8314966 -174100276 - L1MEd LINE L1 -4888 1231 948 675 156 22 59 chr6 8314971 8315106 -174100136 - FLAM_A SINE Alu 0 133 4 183 244 39 102 chr6 8315912 8316039 -174099203 - MIR SINE MIR -50 212 94 765 230 73 0 chr6 8316318 8316509 -174098733 - MER3 DNA MER1_type 0 209 5 1982 122 101 18 chr6 8317096 8317433 -174097809 - MLT1A1 LTR MaLR 0 365 1 279 296 136 16 chr6 8317609 8317734 -174097508 + L2 LINE L2 3126 3265 -7 2806 171 29 11 chr6 8318186 8318712 -174096530 - L1MB5 LINE L1 0 6174 5640 2309 130 37 8 chr6 8318739 8319093 -174096149 + THE1B LTR MaLR 1 364 0 297 173 0 0 chr6 8319281 8319333 -174095909 + L2 LINE L2 3254 3305 -8 1838 164 0 7 chr6 8319948 8320241 -174095001 - AluJo SINE Alu -21 291 1 234 227 0 0 chr6 8320351 8320395 -174094847 + GA-rich Low_complexity Low_complexity 2 45 0 361 271 41 16 chr6 8320918 8321040 -174094202 + L2 LINE L2 3142 3266 -6 2311 105 3 6 chr6 8323911 8324224 -174091018 - AluSq SINE Alu -1 312 1 1241 191 160 11 chr6 8324364 8324626 -174090616 - AluJo SINE Alu 0 302 2 930 269 66 48 chr6 8325453 8326216 -174089026 + L2 LINE L2 2451 3228 -85 387 0 0 0 chr6 8326720 8326763 -174088479 + (CA)n Simple_repeat Simple_repeat 2 44 0 2296 96 3 0 chr6 8327343 8327635 -174087607 + AluSq SINE Alu 3 295 -18 367 363 28 14 chr6 8327854 8328066 -174087176 - MIR SINE MIR -2 260 46 657 116 132 25 chr6 8328137 8328258 -174086984 - AluJb SINE Alu -178 134 1 1970 156 9 18 chr6 8328579 8328918 -174086324 + MER1B DNA MER1_type 2 337 0 229 333 0 13 chr6 8330089 8330164 -174085078 + CT-rich Low_complexity Low_complexity 2 75 0 252 163 41 20 chr6 8330393 8330442 -174084800 + MER81 DNA DNA 65 114 0 238 256 12 24 chr6 8331746 8331828 -174083414 + MIR3 SINE MIR 119 199 -9 3094 43 3 0 chr6 8331925 8332297 -174082945 - L1PA5 LINE L1 -1 6153 5781 272 341 110 18 chr6 8333191 8333355 -174081887 + MIR SINE MIR 13 191 -71 21 82 0 0 chr6 8333946 8333995 -174081247 + AT_rich Low_complexity Low_complexity 1 49 0 437 255 221 5 chr6 8334151 8334355 -174080887 - MIR SINE MIR -13 249 2 1661 68 18 5 chr6 8334674 8334893 -174080349 - L1PA8 LINE L1 -11 6161 5940 1378 169 94 87 chr6 8335302 8335704 -174079538 + MLT1E2 LTR MaLR 11 415 -211 1850 148 3 67 chr6 8335990 8336321 -174078921 - AluJo SINE Alu -2 310 1 405 0 0 0 chr6 8336511 8336556 -174078686 + (TA)n Simple_repeat Simple_repeat 2 46 0 582 179 188 0 chr6 8336556 8336673 -174078569 - FLAM_C SINE Alu -3 140 2 328 274 53 46 chr6 8339214 8339372 -174075870 + MIR3 SINE MIR 42 203 -5 1923 166 3 3 chr6 8340725 8341032 -174074210 - AluJo SINE Alu -5 307 1 2643 59 0 0 chr6 8341444 8341750 -174073492 + AluY SINE Alu 1 306 -5 1011 154 5 56 chr6 8341950 8342085 -174073157 - MER5A DNA MER1_type -4 185 60 1872 105 56 0 chr6 8342085 8342389 -174072853 + AluSq SINE Alu 1 319 0 1011 154 5 56 chr6 8342389 8342447 -174072795 - MER5A DNA MER1_type -129 60 1 258 312 18 9 chr6 8342621 8342730 -174072512 + L3b LINE CR1 1391 1500 -83 215 0 67 0 chr6 8343045 8343075 -174072167 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 265 315 99 0 chr6 8344923 8345034 -174070208 + L2 LINE L2 3151 3272 0 202 132 0 26 chr6 8345245 8345283 -174069959 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 623 204 34 28 chr6 8345771 8345947 -174069295 - MER104 DNA MER2_type 0 180 4 185 290 192 27 chr6 8346291 8346515 -174068727 + L2 LINE L2 2715 2975 -339 254 333 106 22 chr6 8346586 8346766 -174068476 + L2 LINE L2 3119 3313 0 387 0 0 0 chr6 8349541 8349584 -174065658 + (CA)n Simple_repeat Simple_repeat 1 43 0 225 255 128 11 chr6 8350084 8350178 -174065064 - MIR3 SINE MIR -11 197 93 262 312 21 0 chr6 8351246 8351339 -174063903 + MIR3 SINE MIR 81 175 -33 489 344 98 15 chr6 8353567 8354108 -174061134 + L2 LINE L2 2174 2759 -555 298 224 109 68 chr6 8354823 8354970 -174060272 + MIR SINE MIR 23 175 -87 1465 150 38 23 chr6 8355042 8355308 -174059934 - AluJo SINE Alu -8 304 35 3245 159 19 9 chr6 8355951 8356524 -174058718 - L1MC1 LINE L1 0 6333 5755 1704 177 75 42 chr6 8357273 8357629 -174057613 + MLT2C1 LTR ERVL 1 372 -25 432 0 0 0 chr6 8357629 8357677 -174057565 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 1704 177 75 42 chr6 8357677 8357704 -174057538 + MLT2C1 LTR ERVL 372 397 0 226 333 118 36 chr6 8357774 8358267 -174056975 - L2 LINE L2 -738 2576 2044 1908 157 10 10 chr6 8359119 8359431 -174055811 - AluJb SINE Alu 0 312 1 389 269 0 37 chr6 8360298 8360406 -174054836 + Charlie2 DNA MER1_type 44 147 -2635 459 245 0 0 chr6 8360463 8360561 -174054681 + L1MA9 LINE L1 6003 6100 -212 616 175 71 0 chr6 8360562 8360688 -174054554 + L1MA9 LINE L1 6178 6312 0 276 264 176 39 chr6 8360901 8361083 -174054159 + Charlie2a DNA MER1_type 1457 1663 -1199 189 0 0 0 chr6 8363182 8363203 -174052039 + (A)n Simple_repeat Simple_repeat 1 21 0 224 269 0 0 chr6 8365199 8365266 -174049976 + (CA)n Simple_repeat Simple_repeat 2 68 0 225 200 40 0 chr6 8366326 8366376 -174048866 - MIR SINE MIR -55 207 156 827 294 127 52 chr6 8366393 8366932 -174048310 + L2 LINE L2 1603 2100 -1214 1883 149 30 3 chr6 8366932 8367233 -174048009 - AluSx SINE Alu -1 311 3 827 294 127 52 chr6 8367233 8367670 -174047572 + L2 LINE L2 2100 2652 -662 452 267 0 46 chr6 8368343 8368474 -174046768 + MIR SINE MIR 63 187 -75 1954 132 11 0 chr6 8368653 8368970 -174046272 + AluJb SINE Alu 1 320 0 2336 88 0 3 chr6 8369103 8369398 -174045844 - AluSq SINE Alu -19 294 1 2311 83 0 29 chr6 8370024 8370337 -174044905 + AluSq SINE Alu 1 304 -9 237 302 147 16 chr6 8370893 8371022 -174044220 + MIR3 SINE MIR 60 205 -3 596 274 78 4 chr6 8371154 8371384 -174043858 + MIR SINE MIR 14 260 -2 719 221 0 0 chr6 8372868 8372995 -174042247 + FRAM SINE Alu 20 146 -30 257 135 0 0 chr6 8373657 8373694 -174041548 - 5S rRNA rRNA -83 38 2 2198 156 15 51 chr6 8374474 8374885 -174040357 + MSTD LTR MaLR 1 396 0 895 155 61 0 chr6 8374949 8375097 -174040145 - AluSg/x SINE Alu -22 290 134 2147 117 0 7 chr6 8375097 8375396 -174039846 - AluSx SINE Alu -15 297 1 2439 87 6 3 chr6 8377582 8377893 -174037349 - AluSx SINE Alu 0 312 1 543 277 19 13 chr6 8378049 8378204 -174037038 + MIR SINE MIR 23 178 -84 201 296 0 0 chr6 8378427 8378471 -174036771 - MIR SINE MIR 0 262 219 453 242 73 0 chr6 8378732 8378856 -174036386 - MER5B DNA MER1_type -45 133 1 277 290 106 37 chr6 8378879 8379016 -174036226 - MER5A DNA MER1_type -29 160 7 519 199 133 20 chr6 8380223 8380374 -174034868 - MER5B DNA MER1_type -10 168 1 2910 174 66 62 chr6 8381218 8381973 -174033269 + L1MCa LINE L1 186 943 -5483 224 250 77 29 chr6 8382138 8382242 -174033000 + MER5A DNA MER1_type 81 189 0 2254 76 42 0 chr6 8382391 8382679 -174032563 + AluY SINE Alu 2 301 -10 206 32 32 0 chr6 8382687 8382718 -174032524 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1938 161 3 19 chr6 8383016 8383333 -174031909 - AluJo SINE Alu 0 312 1 1766 196 136 7 chr6 8383593 8384011 -174031231 + MLT1D LTR MaLR 27 498 -7 708 195 0 0 chr6 8384884 8385007 -174030235 + FLAM_A SINE Alu 1 123 -10 2133 107 0 73 chr6 8387442 8387769 -174027473 + AluSx SINE Alu 1 303 -9 270 325 0 90 chr6 8387782 8387982 -174027260 - L2 LINE L2 -86 3186 3005 2189 106 0 3 chr6 8388896 8389210 -174026032 + AluSx SINE Alu 1 313 0 929 193 31 0 chr6 8389438 8389599 -174025643 + FRAM SINE Alu 1 166 0 2313 119 0 3 chr6 8389658 8389969 -174025273 + AluSx SINE Alu 1 310 -2 334 275 138 14 chr6 8390102 8390240 -174025002 - MIR3 SINE MIR -21 187 33 335 313 71 0 chr6 8390620 8390719 -174024523 - L2 LINE L2 -43 3229 3124 1926 184 115 12 chr6 8392049 8392468 -174022774 + MLT1C LTR MaLR 6 467 0 5356 244 63 43 chr6 8392516 8393453 -174021789 + L1MEc LINE L1 246 1163 -5052 180 0 0 0 chr6 8393453 8393473 -174021769 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5356 244 63 43 chr6 8393473 8394647 -174020595 + L1MEc LINE L1 1163 2312 -3903 2309 94 0 3 chr6 8394647 8394954 -174020288 + AluY SINE Alu 3 308 -3 5356 244 63 43 chr6 8394954 8395254 -174019988 + L1MEc LINE L1 2312 2604 -3611 1805 158 30 0 chr6 8395254 8395557 -174019685 + AluJo SINE Alu 1 312 0 5356 244 63 43 chr6 8395557 8395887 -174019355 + L1MEc LINE L1 2604 3035 -3180 360 246 246 0 chr6 8396156 8396298 -174018944 - MER5A DNA MER1_type 0 189 13 765 230 133 5 chr6 8397356 8397552 -174017690 + MER58A DNA MER1_type 4 224 0 286 269 101 40 chr6 8397552 8397701 -174017541 + L3 LINE CR1 1306 1463 -114 378 306 8 8 chr6 8399711 8399835 -174015407 + MER5A DNA MER1_type 1 124 -65 193 331 192 0 chr6 8399750 8399880 -174015362 - MER5A DNA MER1_type -28 161 7 * 539 280 70 0 chr6 8401345 8401545 -174013697 - MIR SINE MIR -16 246 33 1581 219 164 39 chr6 8401626 8401717 -174013525 - MLT1E2 LTR MaLR 0 626 548 1998 143 3 0 chr6 8401717 8402011 -174013231 + AluJb SINE Alu 1 295 -17 1581 219 164 39 chr6 8402011 8402431 -174012811 - MLT1E2 LTR MaLR -78 548 51 196 374 32 11 chr6 8403257 8403447 -174011795 + L2 LINE L2 2657 2850 -464 1102 129 13 0 chr6 8403686 8403841 -174011401 - AluSq SINE Alu -20 293 137 1675 175 15 4 chr6 8404092 8404366 -174010876 + AluJo SINE Alu 1 277 -35 919 260 115 41 chr6 8404554 8404973 -174010269 + L1ME LINE L1 1 450 -5620 627 216 58 0 chr6 8404965 8405104 -174010138 + L1ME2 LINE L1 6008 6154 -10 * 1946 115 39 0 chr6 8405177 8405456 -174009786 - AluSx SINE Alu -20 292 3 298 193 35 153 chr6 8405458 8405660 -174009582 + L1MC4 LINE L1 7864 8041 -1 951 127 0 0 chr6 8407930 8408056 -174007186 + FLAM_C SINE Alu 1 126 -17 1735 149 14 11 chr6 8408066 8408347 -174006895 + AluJo SINE Alu 1 282 -30 213 39 0 0 chr6 8408353 8408379 -174006863 + (TAA)n Simple_repeat Simple_repeat 2 27 0 187 206 330 10 chr6 8408955 8409052 -174006190 + MER5A DNA MER1_type 16 143 -46 * 473 248 115 49 chr6 8409045 8409331 -174005911 + MER5C DNA MER1_type 20 324 0 227 303 0 0 chr6 8410847 8410923 -174004319 + L1ME1 LINE L1 6046 6121 -45 395 281 131 11 chr6 8411044 8411304 -174003938 - LTR33A LTR ERVL -2 521 231 209 217 0 0 chr6 8411674 8411720 -174003522 + A-rich Low_complexity Low_complexity 1 46 0 203 267 0 0 chr6 8412001 8412046 -174003196 + GA-rich Low_complexity Low_complexity 1 45 0 2212 106 7 0 chr6 8412465 8412757 -174002485 - AluSx SINE Alu -18 294 1 1504 161 28 46 chr6 8413766 8414090 -174001152 + L1MC1 LINE L1 6016 6333 0 184 220 40 0 chr6 8415348 8415398 -173999844 + MIR3 SINE MIR 153 204 -4 1996 128 0 29 chr6 8416457 8416763 -173998479 + AluSx SINE Alu 1 297 -15 389 308 69 47 chr6 8418073 8418349 -173996893 - L2 LINE L2 -27 3286 3005 363 166 78 181 chr6 8419605 8419658 -173995584 - MER5B DNA MER1_type 0 178 121 592 212 0 38 chr6 8419658 8419790 -173995452 + FLAM_A SINE Alu 1 127 -6 363 166 78 181 chr6 8419790 8419929 -173995313 - MER5B DNA MER1_type -57 121 6 433 268 28 56 chr6 8419993 8420172 -173995070 - MER5B DNA MER1_type 0 178 5 207 333 0 0 chr6 8420320 8420383 -173994859 + G-rich Low_complexity Low_complexity 1 63 0 26 88 0 0 chr6 8421792 8421860 -173993382 + GC_rich Low_complexity Low_complexity 1 68 0 222 62 0 0 chr6 8422352 8422384 -173992858 + (CTG)n Simple_repeat Simple_repeat 3 34 0 185 160 0 20 chr6 8422521 8422571 -173992671 + (CGG)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr6 8423416 8423438 -173991804 + GC_rich Low_complexity Low_complexity 1 22 0 2360 133 17 0 chr6 8425268 8425622 -173989620 + MER46B DNA MER2_type 2 236 0 189 107 0 0 chr6 8425656 8425684 -173989558 + (CA)n Simple_repeat Simple_repeat 2 29 0 1727 120 7 80 chr6 8427029 8427328 -173987914 + AluJb SINE Alu 24 300 -12 321 175 225 33 chr6 8428374 8428494 -173986748 - L2 LINE L2 0 3313 3171 1220 248 45 7 chr6 8428550 8428869 -173986373 + MLT1E2 LTR MaLR 271 626 0 767 269 88 30 chr6 8428879 8429184 -173986058 - L2 LINE L2 -173 3140 2818 988 238 71 29 chr6 8429270 8429581 -173985661 + L1ME3A LINE L1 5842 6165 -5 715 281 32 32 chr6 8429621 8429867 -173985375 - L2 LINE L2 -551 2763 2518 1880 79 0 0 chr6 8430253 8430482 -173984760 - AluY SINE Alu -1 310 82 1014 197 56 16 chr6 8430511 8430760 -173984482 + L1MC3 LINE L1 7527 7785 0 2229 116 3 0 chr6 8430842 8431136 -173984106 + AluSq SINE Alu 1 295 -18 3845 204 61 75 chr6 8431375 8431673 -173983569 - L1MDa LINE L1 -4085 2455 2154 2093 138 0 3 chr6 8431673 8431969 -173983273 - AluJb SINE Alu -17 295 1 3845 204 61 75 chr6 8431969 8432133 -173983109 - L1MDa LINE L1 -4386 2154 1989 2947 6 0 0 chr6 8432133 8432444 -173982798 - AluY SINE Alu 0 311 1 3845 204 61 75 chr6 8432444 8433146 -173982096 - L1MDa LINE L1 -4551 1989 1310 1242 63 0 0 chr6 8433146 8433304 -173981938 - L1PA3 LINE L1 0 6155 5998 3845 204 61 75 chr6 8433304 8433503 -173981739 - L1MDa LINE L1 -5230 1310 1110 * 5730 136 42 2 chr6 8433496 8434400 -173980842 - L1MC1 LINE L1 0 6333 5394 2004 179 6 0 chr6 8434400 8434757 -173980485 - L1MDa LINE L1 -5392 1151 793 362 171 13 13 chr6 8435239 8435315 -173979927 + L2 LINE L2 3238 3313 0 261 271 60 53 chr6 8436335 8436468 -173978774 - L2 LINE L2 -7 3265 3132 373 248 108 8 chr6 8436665 8436794 -173978448 - L2 LINE L2 -14 3299 3158 1523 317 125 29 chr6 8436822 8438082 -173977160 - L2 LINE L2 -276 2996 1618 1995 268 50 23 chr6 8438227 8438790 -173976452 + MLT1E LTR MaLR 16 593 0 1803 185 22 27 chr6 8439583 8439950 -173975292 + MLT1A1 LTR MaLR 1 365 0 1210 102 81 106 chr6 8440784 8440865 -173974377 + MER30 DNA MER1_type 1 83 -147 2501 57 3 0 chr6 8440865 8441162 -173974080 + AluY SINE Alu 1 298 -13 1210 102 81 106 chr6 8441162 8441316 -173973926 + MER30 DNA MER1_type 83 230 0 206 299 26 0 chr6 8441945 8442022 -173973220 - L2 LINE L2 -300 2972 2894 217 340 212 17 chr6 8442130 8443012 -173972230 - L2 LINE L2 -551 2763 1710 1852 154 0 29 chr6 8444045 8444374 -173970868 + AluJo SINE Alu 1 312 0 1624 196 27 46 chr6 8444420 8444462 -173970780 - MLT1A1 LTR MaLR 0 365 324 2331 84 0 47 chr6 8444462 8444783 -173970459 + AluSq SINE Alu 1 306 -7 1624 196 27 46 chr6 8444783 8445108 -173970134 - MLT1A1 LTR MaLR -41 324 5 300 291 78 28 chr6 8445508 8445649 -173969593 + L2 LINE L2 2922 3069 -203 281 247 0 67 chr6 8446116 8446205 -173969037 + MIR SINE MIR 109 191 -71 985 203 98 51 chr6 8447525 8447745 -173967497 - L1ME3A LINE L1 0 6170 5931 2089 150 129 5 chr6 8447745 8448126 -173967116 + MSTA LTR MaLR 1 428 0 985 203 98 51 chr6 8448126 8448200 -173967042 - L1ME3A LINE L1 -239 5931 5862 371 269 23 0 chr6 8448672 8448776 -173966466 + MIR SINE MIR 45 151 -57 2366 108 0 0 chr6 8449160 8449467 -173965775 - AluSx SINE Alu -5 307 1 2302 139 21 10 chr6 8449604 8450149 -173965093 - LTR51 LTR ERV1 0 671 73 2231 115 3 0 chr6 8450149 8450453 -173964789 - AluSg SINE Alu -5 305 1 2302 139 21 10 chr6 8450453 8450527 -173964715 - LTR51 LTR ERV1 -598 73 1 26 0 0 0 chr6 8450696 8450722 -173964520 + AT_rich Low_complexity Low_complexity 1 26 0 193 305 203 34 chr6 8452144 8452262 -173962980 - L2 LINE L2 -2 3270 3133 2273 116 3 0 chr6 8452387 8452690 -173962552 + AluSx SINE Alu 1 304 -8 681 200 0 24 chr6 8453904 8454029 -173961213 + AluJb SINE Alu 7 128 -184 363 158 29 14 chr6 8454066 8454205 -173961037 + (TA)n Simple_repeat Simple_repeat 2 142 0 1737 144 0 4 chr6 8454477 8454733 -173960509 + AluJb SINE Alu 1 255 -57 616 174 9 17 chr6 8454737 8454852 -173960390 - ORSL DNA AcHobo -11 264 151 339 106 0 0 chr6 8454869 8454916 -173960326 + AluJb SINE Alu 252 298 -4 849 239 36 54 chr6 8455082 8455362 -173959880 + ORSL DNA AcHobo 1 275 0 205 371 57 9 chr6 8455515 8455620 -173959622 + L2 LINE L2 3159 3268 -4 1336 158 4 58 chr6 8455638 8455898 -173959344 + AluJo SINE Alu 52 297 -15 367 322 90 6 chr6 8456003 8456180 -173959062 + MIR SINE MIR 46 237 -25 327 338 52 0 chr6 8456345 8456481 -173958761 + MIR SINE MIR 47 189 -73 375 23 0 0 chr6 8456766 8456810 -173958432 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2305 98 3 13 chr6 8457892 8458208 -173957034 + AluSq SINE Alu 1 313 0 183 235 0 0 chr6 8458242 8458293 -173956949 + G-rich Low_complexity Low_complexity 3 53 0 250 282 0 68 chr6 8458360 8458406 -173956836 + LTR67 LTR ERVL 444 539 -18 284 211 18 0 chr6 8458406 8458463 -173956779 + MLT1K LTR MaLR 511 568 -20 331 309 133 24 chr6 8459060 8459225 -173956017 + MIR3 SINE MIR 21 203 -5 808 176 150 31 chr6 8460507 8460626 -173954616 + L1ME3A LINE L1 5904 6007 -163 1890 167 6 3 chr6 8460626 8460937 -173954305 - AluJb SINE Alu 0 312 1 808 176 150 31 chr6 8460937 8461044 -173954198 + L1ME3A LINE L1 6007 6157 -13 2842 230 56 6 chr6 8461172 8461847 -173953395 - L1ME1 LINE L1 -17 6149 5441 21 0 0 0 chr6 8462678 8462699 -173952543 + AT_rich Low_complexity Low_complexity 1 21 0 675 190 8 0 chr6 8462699 8462820 -173952422 - FLAM_C SINE Alu -11 122 1 1165 136 44 29 chr6 8463653 8463859 -173951383 - MER3 DNA MER1_type 0 209 1 1403 145 5 5 chr6 8464641 8464855 -173950387 - AluJo SINE Alu -13 299 86 190 242 97 16 chr6 8465136 8465198 -173950044 - MIR SINE MIR -84 124 58 248 310 106 21 chr6 8465487 8465629 -173949613 - MIR3 SINE MIR -23 185 32 837 174 43 31 chr6 8465747 8465908 -173949334 - FRAM SINE Alu -3 163 1 185 0 0 39 chr6 8466156 8466182 -173949060 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2095 104 21 7 chr6 8466193 8466480 -173948762 - AluSq SINE Alu -22 291 1 180 143 0 0 chr6 8468390 8468432 -173946810 + (A)n Simple_repeat Simple_repeat 1 42 0 3695 143 50 16 chr6 8468668 8469282 -173945960 + MER41B LTR ERV1 1 635 0 241 326 7 43 chr6 8469813 8469951 -173945291 + L2 LINE L2 3133 3265 -7 457 261 48 30 chr6 8470023 8470188 -173945054 - MIR3 SINE MIR -3 205 38 2310 115 0 0 chr6 8470378 8470683 -173944559 + AluSx SINE Alu 1 305 -7 2317 171 23 0 chr6 8472045 8472085 -173943157 - MLT2D LTR ERVL -12 402 364 823 85 15 0 chr6 8472085 8472215 -173943027 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 2317 171 23 0 chr6 8472215 8472567 -173942675 - MLT2D LTR ERVL -50 364 1 2372 108 0 6 chr6 8473198 8473512 -173941730 + AluSx SINE Alu 1 312 0 346 274 170 72 chr6 8473794 8474195 -173941047 + MLT1J2 LTR MaLR 2 441 -9 2368 104 0 0 chr6 8474623 8474921 -173940321 + AluSq SINE Alu 1 298 -15 1086 257 105 34 chr6 8474923 8475495 -173939747 - MLT2F LTR ERVL -12 651 2 371 259 94 55 chr6 8475572 8475773 -173939469 + L2 LINE L2 3088 3296 -17 369 253 205 18 chr6 8475993 8476159 -173939083 - MIR SINE MIR -16 246 50 227 306 47 24 chr6 8476713 8476798 -173938444 + MIR SINE MIR 29 115 -147 1946 165 30 12 chr6 8478709 8479116 -173936126 + MLT1B LTR MaLR 5 433 -34 984 189 28 18 chr6 8479619 8479836 -173935406 + MER20 DNA MER1_type 1 219 0 1111 142 11 11 chr6 8479905 8480095 -173935147 - AluJo SINE Alu -1 311 122 833 148 0 15 chr6 8480144 8480279 -173934963 - AluJo SINE Alu -169 133 1 1743 176 47 52 chr6 8480280 8480667 -173934575 + MLT1B LTR MaLR 6 390 0 1409 110 8 55 chr6 8480676 8480913 -173934329 - MLT1B LTR MaLR -161 229 4 286 296 46 9 chr6 8481448 8481556 -173933686 - MLT1L LTR MaLR -8 607 496 456 271 30 15 chr6 8481690 8481823 -173933419 - MLT1L LTR MaLR -353 262 128 506 289 11 42 chr6 8482066 8482256 -173932986 + ERVL LTR ERVL 10 193 -4803 2001 160 31 0 chr6 8482827 8483146 -173932096 + MER7A DNA MER2_type 1 327 -19 299 211 26 0 chr6 8483163 8483239 -173932003 - L1M4 LINE L1 -1052 5094 5017 799 157 0 15 chr6 8483395 8483529 -173931713 + FLAM_C SINE Alu 1 132 -1 1384 86 50 10 chr6 8483543 8483741 -173931501 + AluSg/x SINE Alu 89 294 -16 282 230 54 0 chr6 8483830 8483904 -173931338 - L1P LINE L1 -2366 3780 3703 2224 152 38 47 chr6 8484026 8484719 -173930523 + L1MB8 LINE L1 4871 5572 -606 3840 89 10 43 chr6 8484720 8484916 -173930326 - L1PA16 LINE L1 -1 6165 5964 1839 181 3 0 chr6 8484916 8485219 -173930023 - AluJo SINE Alu -8 304 1 3840 89 10 43 chr6 8485219 8485609 -173929633 - L1PA16 LINE L1 -202 5964 5598 6071 178 17 12 chr6 8485633 8486062 -173929180 - L1P4 LINE L1 -545 5621 5196 2030 132 17 7 chr6 8486062 8486357 -173928885 - AluSq SINE Alu -15 298 1 6071 178 17 12 chr6 8486357 8487500 -173927742 - L1P4 LINE L1 -970 5196 4040 3251 183 13 7 chr6 8487505 8488116 -173927126 + L1MB8 LINE L1 5562 6176 -2 2301 270 91 19 chr6 8488138 8489859 -173925383 + ERVL LTR ERVL 401 2331 -2665 759 293 21 45 chr6 8489864 8489954 -173925288 + ERVL LTR ERVL 2489 2580 -2416 2196 120 13 0 chr6 8489954 8490255 -173924987 + AluSx SINE Alu 1 305 -7 759 293 21 45 chr6 8490255 8490271 -173924971 + ERVL LTR ERVL 2580 2595 -2401 2874 122 7 23 chr6 8490271 8490705 -173924537 + MSTC LTR MaLR 2 428 0 759 293 21 45 chr6 8490705 8490887 -173924355 + ERVL LTR ERVL 2595 2771 -2225 * 1394 331 58 36 chr6 8490882 8491787 -173923455 + ERVL LTR ERVL 4144 5067 -697 1013 214 117 16 chr6 8492192 8492509 -173922733 + LTR16A LTR ERVL 66 414 -36 1495 262 97 68 chr6 8492582 8493205 -173922037 + HAL1 LINE L1 1668 2322 -185 2096 117 3 22 chr6 8493205 8493521 -173921721 - AluSx SINE Alu -2 310 1 1495 262 97 68 chr6 8493521 8493710 -173921532 + HAL1 LINE L1 2322 2504 -3 2286 113 3 0 chr6 8493735 8494046 -173921196 + AluSp SINE Alu 2 313 0 847 218 0 0 chr6 8494431 8494578 -173920664 + FRAM SINE Alu 1 146 -30 1162 265 31 55 chr6 8494617 8494716 -173920526 - L1MC5 LINE L1 -90 7871 7771 1718 182 0 7 chr6 8494716 8495013 -173920229 - AluJb SINE Alu -17 295 1 1162 265 31 55 chr6 8495013 8495495 -173919747 - L1MC5 LINE L1 -190 7771 7304 331 269 195 62 chr6 8495790 8496047 -173919195 + MLT1H-int LTR MaLR 1074 1364 -7 694 264 184 48 chr6 8496083 8496393 -173918849 + MLT1H LTR MaLR 43 394 -173 299 181 162 29 chr6 8496461 8496566 -173918676 - L1MC5 LINE L1 -734 7227 7109 375 231 103 17 chr6 8496629 8496746 -173918496 - L1MC5 LINE L1 -853 7108 6982 957 248 16 33 chr6 8496775 8497081 -173918161 - L1MC4 LINE L1 -954 7088 6788 1393 60 0 0 chr6 8497277 8497443 -173917799 + AluSg/x SINE Alu 136 301 -11 465 276 0 98 chr6 8497594 8497768 -173917474 - MER5B DNA MER1_type -21 157 1 349 319 88 0 chr6 8499304 8499417 -173915825 + MER20B DNA MER1_type 53 175 -608 2623 62 0 0 chr6 8500610 8500918 -173914324 + AluY SINE Alu 1 308 -3 390 243 81 27 chr6 8503125 8503336 -173911906 + LTR16C LTR ERVL 169 448 -43 589 279 86 72 chr6 8503390 8503752 -173911490 - MLT1K LTR MaLR -2 586 220 471 270 30 69 chr6 8504380 8504613 -173910629 - MLT1K LTR MaLR -5 583 360 462 298 62 22 chr6 8504718 8504896 -173910346 - MLT1K LTR MaLR -397 191 7 2285 75 7 0 chr6 8505582 8505896 -173909346 + AluSp SINE Alu 5 320 0 1836 173 43 3 chr6 8506177 8506506 -173908736 + MER2 DNA MER2_type 1 342 -2 1976 118 7 28 chr6 8507035 8507349 -173907893 + AluSq SINE Alu 1 308 0 2034 117 47 0 chr6 8507349 8507648 -173907594 + AluSq SINE Alu 1 313 0 1757 261 29 2 chr6 8508305 8508722 -173906520 + MER70B LTR ERVL 4 431 -147 277 319 0 0 chr6 8508847 8508919 -173906323 + (CA)n Simple_repeat Simple_repeat 1 72 0 2341 69 0 0 chr6 8509097 8509372 -173905870 + AluY SINE Alu 22 296 -15 802 205 27 32 chr6 8509757 8509942 -173905300 + MLT1A2 LTR MaLR 1 184 -190 1965 162 51 14 chr6 8560112 8560464 -173854778 - MLT1A1 LTR MaLR 0 365 1 514 133 71 20 chr6 8560606 8560704 -173854538 + Tigger2 DNA MER2_type 2398 2500 -218 2323 83 10 7 chr6 8561095 8561397 -173853845 - AluSg SINE Alu -7 303 1 294 315 0 0 chr6 8561666 8561755 -173853487 - L1MC4 LINE L1 -26 8016 7928 22 0 0 0 chr6 8561882 8561904 -173853338 + AT_rich Low_complexity Low_complexity 1 22 0 365 258 117 75 chr6 8561913 8562030 -173853212 + L1ME LINE L1 5310 5421 -700 2128 119 0 3 chr6 8562030 8562324 -173852918 - AluSx SINE Alu -19 293 1 365 258 117 75 chr6 8562324 8562540 -173852702 + L1ME LINE L1 5421 5657 -464 1851 114 107 11 chr6 8562541 8562813 -173852429 + AluSx SINE Alu 2 299 -13 2390 156 44 35 chr6 8562906 8563335 -173851907 + Tigger2a DNA MER2_type 1 433 -1 2031 113 0 7 chr6 8563444 8563719 -173851523 + AluSx SINE Alu 1 273 -39 195 100 0 0 chr6 8563731 8563761 -173851481 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 310 303 138 9 chr6 8564086 8564195 -173851047 + L2 LINE L2 3125 3247 -25 184 302 48 0 chr6 8564797 8564860 -173850382 + L3 LINE CR1 1495 1560 -17 22 35 0 0 chr6 8564890 8564919 -173850323 + AT_rich Low_complexity Low_complexity 1 29 0 237 117 33 83 chr6 8565328 8565388 -173849854 - L2 LINE L2 -337 2977 2921 2247 94 7 7 chr6 8566346 8566643 -173848599 - AluSg SINE Alu -13 297 1 253 217 87 0 chr6 8566931 8567000 -173848242 + L1ME3A LINE L1 6032 6106 -64 237 296 239 21 chr6 8567162 8567304 -173847938 - MIR SINE MIR -70 192 20 1798 166 3 54 chr6 8567418 8567690 -173847552 + MER7A DNA MER2_type 5 254 -2784 2374 81 0 0 chr6 8567690 8567977 -173847265 + AluSp SINE Alu 1 290 -23 369 0 0 0 chr6 8567977 8568018 -173847224 + (CA)n Simple_repeat Simple_repeat 2 42 0 1798 166 3 54 chr6 8568027 8568116 -173847126 + MER7A DNA MER2_type 254 346 0 226 310 26 26 chr6 8568116 8568229 -173847013 - L1MC/D LINE L1 -2009 5799 5687 23 0 0 0 chr6 8568348 8568371 -173846871 + AT_rich Low_complexity Low_complexity 1 23 0 3132 129 16 2 chr6 8568620 8569062 -173846180 + MER83 LTR ERV1 1 448 0 2222 117 0 0 chr6 8569169 8569469 -173845773 + AluSx SINE Alu 1 300 -12 360 0 0 0 chr6 8569469 8569509 -173845733 + (TA)n Simple_repeat Simple_repeat 2 41 0 29 47 0 0 chr6 8569554 8569597 -173845645 + AT_rich Low_complexity Low_complexity 1 43 0 274 324 56 9 chr6 8569641 8569749 -173845493 + MIR3 SINE MIR 15 127 -81 288 300 43 91 chr6 8570047 8570257 -173844985 + L2 LINE L2 3034 3233 -39 204 200 0 0 chr6 8570888 8570928 -173844314 + G-rich Low_complexity Low_complexity 2 41 0 228 67 0 0 chr6 8571526 8571556 -173843686 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2520 226 64 74 chr6 8572317 8573499 -173841743 + L1MC5 LINE L1 6424 7589 -372 422 235 94 34 chr6 8573607 8573756 -173841486 - MER5B DNA MER1_type -19 159 2 556 300 138 66 chr6 8574439 8574609 -173840633 - L2 LINE L2 -20 3252 3096 2199 103 0 10 chr6 8574609 8574900 -173840342 + AluSg1 SINE Alu 1 288 -21 556 300 138 66 chr6 8574900 8575062 -173840180 - L2 LINE L2 -176 3096 2896 2088 196 56 28 chr6 8575157 8575508 -173839734 + MLT2B1 LTR ERVL 3 372 -148 2400 148 28 14 chr6 8575508 8575867 -173839375 - THE1B LTR MaLR 0 364 1 2088 196 56 28 chr6 8575867 8575980 -173839262 + MLT2B1 LTR ERVL 372 480 -40 2142 104 0 7 chr6 8575986 8576266 -173838976 - AluSg SINE Alu -32 278 1 326 349 35 28 chr6 8576299 8576554 -173838688 + L2 LINE L2 2721 2977 -337 196 353 49 20 chr6 8576673 8576775 -173838467 + L2 LINE L2 3208 3312 -1 651 199 55 7 chr6 8577129 8577275 -173837967 - MIR SINE MIR -10 252 100 239 156 22 0 chr6 8577984 8578029 -173837213 + L2 LINE L2 3268 3313 0 2197 140 0 0 chr6 8578097 8578428 -173836814 + AluSx SINE Alu 1 312 0 854 156 64 64 chr6 8578453 8578626 -173836616 + FRAM SINE Alu 1 171 -5 244 246 0 0 chr6 8578629 8578686 -173836556 + A-rich Low_complexity Low_complexity 1 57 0 812 289 138 29 chr6 8579021 8579370 -173835872 - MLT1J2 LTR MaLR 0 450 64 501 296 74 16 chr6 8579404 8579593 -173835649 + LTR33 LTR ERVL 26 225 -296 325 184 23 58 chr6 8579597 8579684 -173835558 + LTR52 LTR ERVL 9 92 -329 301 247 52 58 chr6 8579754 8579908 -173835334 + LTR52 LTR ERVL 269 421 0 448 307 43 0 chr6 8579936 8580099 -173835143 + LTR33 LTR ERVL 350 519 -2 1992 125 3 38 chr6 8580462 8580781 -173834461 - AluSx SINE Alu -4 308 1 398 298 87 6 chr6 8581576 8581737 -173833505 + L3 LINE CR1 1337 1510 -67 244 225 34 56 chr6 8581821 8581910 -173833332 - L1MC5 LINE L1 -37 7924 7838 338 119 104 0 chr6 8582022 8582089 -173833153 + L1M4 LINE L1 5721 5794 -390 2456 61 0 0 chr6 8582106 8582400 -173832842 - AluY SINE Alu -17 294 1 485 298 178 24 chr6 8582822 8583342 -173831900 - L2 LINE L2 -123 3190 2585 391 284 81 49 chr6 8583344 8583629 -173831613 - MLT1J LTR MaLR -2 509 216 1198 236 119 6 chr6 8583804 8584122 -173831120 + MLT1J LTR MaLR 33 386 -125 1160 148 51 37 chr6 8584348 8584461 -173830781 + MER30 DNA MER1_type 11 130 -100 2419 74 0 13 chr6 8584461 8584772 -173830470 + AluY SINE Alu 1 307 -4 1160 148 51 37 chr6 8584772 8584874 -173830368 + MER30 DNA MER1_type 130 229 -1 2127 125 0 7 chr6 8585155 8585451 -173829791 - AluSx SINE Alu -18 294 1 202 365 66 15 chr6 8585457 8585594 -173829648 + L2 LINE L2 3146 3289 -24 1895 155 3 7 chr6 8585613 8585909 -173829333 - AluJb SINE Alu -17 295 1 440 272 103 82 chr6 8586095 8586194 -173829048 - MLT1G1 LTR MaLR -406 189 83 2235 105 26 0 chr6 8586194 8586499 -173828743 + AluSq SINE Alu 1 313 0 440 272 103 82 chr6 8586499 8586583 -173828659 - MLT1G1 LTR MaLR -512 83 2 306 276 72 125 chr6 8586585 8586889 -173828353 - MLT1G1-int LTR MaLR -1 1370 1083 2114 125 3 0 chr6 8587231 8587526 -173827716 + AluSx SINE Alu 1 296 -16 337 220 165 0 chr6 8587951 8588060 -173827182 + L1MA10 LINE L1 6201 6327 -7 37 0 0 0 chr6 8588634 8588671 -173826571 + AT_rich Low_complexity Low_complexity 1 37 0 563 218 17 165 chr6 8588733 8588923 -173826319 - MLT1G1-int LTR MaLR -770 601 384 2522 129 114 8 chr6 8588923 8589310 -173825932 - MSTA LTR MaLR 0 428 1 563 218 17 165 chr6 8589310 8589336 -173825906 - MLT1G1-int LTR MaLR -987 384 356 1795 181 0 7 chr6 8589336 8589635 -173825607 - AluJb SINE Alu -4 308 12 563 218 17 165 chr6 8589635 8589680 -173825562 - MLT1G1-int LTR MaLR -1015 356 306 2590 160 19 16 chr6 8589680 8590040 -173825202 + MSTB1 LTR MaLR 1 364 -68 2057 92 27 37 chr6 8590040 8590334 -173824908 - AluSx SINE Alu -21 291 1 2590 160 19 16 chr6 8590334 8590404 -173824838 + MSTB1 LTR MaLR 364 432 0 563 218 17 165 chr6 8590404 8590558 -173824684 - MLT1G1-int LTR MaLR -1065 306 246 236 238 0 16 chr6 8590591 8590654 -173824588 - MLT1G1-int LTR MaLR -1309 62 1 2090 111 14 0 chr6 8590660 8590949 -173824293 - AluSq SINE Alu -20 293 1 1989 111 21 17 chr6 8592061 8592350 -173822892 + AluSp SINE Alu 1 290 -23 811 265 88 8 chr6 8592367 8592616 -173822626 - L1ME3A LINE L1 -8 6162 5894 * 915 226 39 11 chr6 8592609 8592627 -173822615 - L1ME2 LINE L1 -168 5996 5980 861 151 26 0 chr6 8592627 8592779 -173822463 - L1MA10 LINE L1 -2 6332 6177 915 226 39 11 chr6 8592779 8593039 -173822203 - L1ME2 LINE L1 -184 5980 5754 344 183 0 0 chr6 8593039 8593099 -173822143 - L1ME3A LINE L1 -262 5908 5849 370 282 149 51 chr6 8593397 8593652 -173821590 + MLT1I LTR MaLR 63 342 -67 1732 165 6 22 chr6 8593766 8594082 -173821160 - AluJo SINE Alu 0 312 2 4856 141 24 3 chr6 8594239 8595006 -173820236 + L1PA16 LINE L1 5363 6145 -21 778 178 0 0 chr6 8595063 8595181 -173820061 + FLAM_A SINE Alu 6 123 -19 1975 167 3 0 chr6 8595375 8595680 -173819562 + AluJb SINE Alu 1 306 -6 2337 89 3 7 chr6 8596252 8596554 -173818688 - AluSg SINE Alu -9 301 1 684 245 26 49 chr6 8596598 8596863 -173818379 + MIR SINE MIR 2 260 -2 1688 92 0 0 chr6 8597193 8597410 -173817832 - AluY SINE Alu -11 300 84 276 149 0 0 chr6 8597442 8597489 -173817753 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 273 327 75 9 chr6 8597491 8597598 -173817644 - L2 LINE L2 -5 3308 3195 1805 102 94 23 chr6 8598348 8598641 -173816601 + AluSx SINE Alu 1 312 0 201 286 82 0 chr6 8598944 8598993 -173816249 + L2 LINE L2 3207 3259 -13 423 236 0 81 chr6 8599021 8599144 -173816098 - MER69 DNA AcHobo 0 2526 2414 2015 168 8 46 chr6 8600421 8600813 -173814429 - MLT1B LTR MaLR -6 384 8 1879 144 0 3 chr6 8600902 8601186 -173814056 - AluJb SINE Alu -3 309 27 1747 146 4 0 chr6 8601446 8601700 -173813542 - AluSx SINE Alu -57 255 1 1992 127 51 7 chr6 8602068 8602360 -173812882 - AluSx SINE Alu -7 305 1 467 144 152 30 chr6 8602447 8602579 -173812663 - L2 LINE L2 -8 3305 3158 268 141 109 47 chr6 8602586 8602650 -173812592 + HsTC2 DNA Tc2 3 70 -1828 1827 224 50 42 chr6 8602684 8603061 -173812181 + HsTC2 DNA Tc2 1274 1659 -239 2334 94 3 0 chr6 8603061 8603369 -173811873 - AluSq SINE Alu -4 309 1 1827 224 50 42 chr6 8603369 8603611 -173811631 + HsTC2 DNA Tc2 1659 1898 0 331 339 5 16 chr6 8603718 8603857 -173811385 + MIR SINE MIR 30 144 -64 200 286 14 14 chr6 8603919 8603989 -173811253 - L2 LINE L2 -49 3264 3195 2009 146 13 7 chr6 8604384 8604692 -173810550 - AluSx SINE Alu -2 310 1 383 261 45 18 chr6 8606092 8606203 -173809039 - MIR SINE MIR -92 170 57 42 65 0 0 chr6 8606211 8606288 -173808954 + AT_rich Low_complexity Low_complexity 1 77 0 2268 83 0 0 chr6 8606366 8606642 -173808600 - AluSc SINE Alu -14 295 20 184 315 102 39 chr6 8606722 8606849 -173808393 + MIR SINE MIR 13 147 -115 2053 139 0 10 chr6 8607910 8608220 -173807022 + AluJb SINE Alu 6 312 0 22 70 0 0 chr6 8608639 8608682 -173806560 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr6 8608711 8608746 -173806496 + AT_rich Low_complexity Low_complexity 1 35 0 317 227 0 13 chr6 8608928 8609003 -173806239 + MLT1I LTR MaLR 327 400 -9 1912 147 10 7 chr6 8610522 8610829 -173804413 - AluSx SINE Alu -4 308 1 21 0 0 0 chr6 8610945 8610966 -173804276 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 8610966 8610987 -173804255 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 2219 98 0 3 chr6 8611764 8612060 -173803182 - AluSq SINE Alu -18 295 1 342 61 0 0 chr6 8612340 8612389 -173802853 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 281 316 105 0 chr6 8612456 8612589 -173802653 + MIR SINE MIR 110 256 -6 189 162 0 0 chr6 8612687 8612707 -173802535 + GA-rich Low_complexity Low_complexity 2 24 -14 2261 117 0 3 chr6 8612707 8613007 -173802235 + AluSq SINE Alu 1 299 -14 189 162 0 0 chr6 8613007 8613023 -173802219 + GA-rich Low_complexity Low_complexity 23 38 0 338 283 71 0 chr6 8613159 8613272 -173801970 - L2 LINE L2 -16 3256 3136 225 65 0 0 chr6 8614672 8614703 -173800539 + (CAT)n Simple_repeat Simple_repeat 2 32 0 308 231 15 92 chr6 8615756 8615886 -173799356 + MIR SINE MIR 84 203 -59 180 0 0 0 chr6 8615886 8615906 -173799336 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 274 318 130 7 chr6 8615965 8616119 -173799123 - MIR3 SINE MIR -32 176 4 2315 159 20 54 chr6 8616927 8617216 -173798026 - MSTB LTR MaLR 0 426 156 2247 96 10 3 chr6 8617216 8617509 -173797733 - AluSp SINE Alu -18 295 1 2315 159 20 54 chr6 8617509 8617660 -173797582 - MSTB LTR MaLR -270 156 1 1604 194 169 54 chr6 8618943 8618982 -173796260 - MLT2B1 LTR ERVL 0 520 487 405 0 0 0 chr6 8618982 8619027 -173796215 + (TG)n Simple_repeat Simple_repeat 1 45 0 1604 194 169 54 chr6 8619027 8619450 -173795792 - MLT2B1 LTR ERVL -33 487 5 311 331 103 0 chr6 8619732 8619815 -173795427 + MIR3 SINE MIR 31 104 -104 1528 186 49 3 chr6 8619815 8620100 -173795142 - AluJb SINE Alu -12 300 3 311 331 103 0 chr6 8620100 8620152 -173795090 + MIR3 SINE MIR 104 180 -28 844 201 0 0 chr6 8620593 8620737 -173794505 - Tigger5 DNA MER2_type 0 2323 2180 901 179 19 13 chr6 8620738 8620894 -173794348 - Tigger5 DNA MER2_type -2166 157 1 1196 224 44 108 chr6 8622300 8622544 -173792698 + MLT1C LTR MaLR 1 198 -269 2241 125 0 0 chr6 8622544 8622856 -173792386 + AluSx SINE Alu 1 312 0 1196 224 44 108 chr6 8622856 8623110 -173792132 + MLT1C LTR MaLR 198 467 0 978 210 68 5 chr6 8623223 8623442 -173791800 + MER96B DNA MER1_type? 6 238 -179 307 256 31 39 chr6 8624275 8624404 -173790838 - L1ME1 LINE L1 -43 6123 5996 2146 240 28 9 chr6 8624450 8625024 -173790218 - L1M4 LINE L1 -1120 5262 4678 704 174 8 0 chr6 8625030 8625151 -173790091 - MER31A LTR ERV1 0 485 364 2384 239 80 3 chr6 8625151 8625904 -173789338 - L1M4c LINE L1 -2732 3650 2840 1817 166 68 91 chr6 8625950 8626498 -173788744 - LTR49 LTR ERV1 -49 546 12 3782 251 36 29 chr6 8626505 8627144 -173788098 - L1M4c LINE L1 -3531 2851 2218 2072 143 10 0 chr6 8627144 8627451 -173787791 - AluSg SINE Alu 0 310 1 3782 251 36 29 chr6 8627451 8628534 -173786708 - L1M4c LINE L1 -4164 2218 1023 1783 175 0 3 chr6 8629172 8629488 -173785754 - AluJb SINE Alu 0 315 1 2717 113 40 38 chr6 8629851 8630274 -173784968 - MSTA LTR MaLR -4 424 1 2505 77 0 0 chr6 8630385 8630684 -173784558 - AluSc SINE Alu -10 299 1 221 316 79 82 chr6 8630758 8631087 -173784155 - L2 LINE L2 0 3272 2945 301 340 7 44 chr6 8631336 8631455 -173783787 - MIR SINE MIR -67 141 42 2237 37 67 0 chr6 8631455 8631724 -173783518 - AluY SINE Alu -15 296 10 301 340 7 44 chr6 8631724 8631763 -173783479 - MIR SINE MIR -166 42 3 2333 97 3 7 chr6 8631816 8632126 -173783116 - AluSx SINE Alu -3 309 1 4395 132 97 128 chr6 8632376 8633599 -173781643 + pTR5 LTR ERV1 738 2219 -219 2963 13 0 0 chr6 8633599 8633917 -173781325 + AluYb8 SINE Alu 1 318 0 4395 132 97 128 chr6 8633917 8634131 -173781111 + pTR5 LTR ERV1 2219 2438 0 221 314 23 12 chr6 8634204 8634290 -173780952 - MIR SINE MIR -108 154 68 240 86 0 0 chr6 8634822 8634857 -173780385 + (TTCCC)n Simple_repeat Simple_repeat 4 38 0 195 213 66 33 chr6 8635006 8635067 -173780175 - L2 LINE L2 0 3313 3251 1447 242 114 39 chr6 8635966 8636429 -173778813 - MLT1D LTR MaLR -7 498 1 431 304 59 42 chr6 8636428 8636665 -173778577 + MER112 DNA MER1_type 2 242 -18 * 182 376 0 40 chr6 8637912 8638013 -173777229 + MIR3 SINE MIR 62 158 -50 2444 64 0 3 chr6 8638021 8638318 -173776924 - AluY SINE Alu -14 297 2 2627 65 0 0 chr6 8639433 8639740 -173775502 + AluY SINE Alu 1 307 -4 5792 147 83 53 chr6 8640184 8641091 -173774151 - Tigger3b DNA MER2_type -1797 1231 279 2307 102 3 0 chr6 8641091 8641395 -173773847 + AluSq SINE Alu 1 305 -8 5792 147 83 53 chr6 8641395 8641673 -173773569 - Tigger3b DNA MER2_type -2749 279 11 2206 102 0 22 chr6 8641674 8641987 -173773255 + AluSx SINE Alu 1 306 -6 204 97 0 0 chr6 8642354 8642385 -173772857 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 981 277 81 22 chr6 8642387 8642982 -173772260 - L2 LINE L2 -10 3303 2679 1265 259 88 46 chr6 8643404 8643697 -173771545 - L1ME3A LINE L1 -268 5902 5623 1522 183 29 26 chr6 8643697 8644008 -173771234 - AluJo SINE Alu 0 312 1 1265 259 88 46 chr6 8644008 8644612 -173770630 - L1ME3A LINE L1 -547 5623 4962 336 204 9 19 chr6 8644617 8644725 -173770517 + CT-rich Low_complexity Low_complexity 3 109 0 466 214 172 0 chr6 8644874 8645019 -173770223 - MER5B DNA MER1_type 0 178 9 598 268 13 0 chr6 8645063 8645220 -173770022 - MER53 DNA DNA -1 188 30 316 135 27 0 chr6 8645246 8645320 -173769922 + (TA)n Simple_repeat Simple_repeat 1 76 0 1688 115 93 22 chr6 8645320 8645589 -173769653 - AluSx SINE Alu -24 288 1 342 276 58 63 chr6 8646578 8646752 -173768490 - MIR SINE MIR -70 192 20 1992 148 0 10 chr6 8646967 8647264 -173767978 - AluJb SINE Alu -16 296 3 310 377 52 7 chr6 8647555 8647709 -173767533 - L2 LINE L2 0 3272 3112 239 309 140 11 chr6 8649103 8649281 -173765961 - MIR SINE MIR -6 256 56 530 208 10 10 chr6 8649500 8649711 -173765531 + CT-rich Low_complexity Low_complexity 1 211 0 2163 180 46 58 chr6 8650486 8651052 -173764190 - MER89 LTR ERV1 0 559 1 242 211 0 14 chr6 8653130 8653138 -173762104 + (TA)n Simple_repeat Simple_repeat 1 8 -62 849 109 8 0 chr6 8653138 8653257 -173761985 - L1PA11 LINE L1 -2 6172 6053 242 211 0 14 chr6 8653257 8653319 -173761923 + (TA)n Simple_repeat Simple_repeat 8 70 0 2532 26 0 48 chr6 8653320 8653631 -173761611 - AluY SINE Alu -15 296 1 6036 107 4 13 chr6 8653634 8654312 -173760930 - L1PA11 LINE L1 -110 6064 5381 2559 68 0 0 chr6 8654312 8654623 -173760619 - AluY SINE Alu 0 311 1 6036 107 4 13 chr6 8654623 8655382 -173759860 - L1PA11 LINE L1 -793 5381 4639 23 33 0 0 chr6 8655382 8655412 -173759830 + AT_rich Low_complexity Low_complexity 1 30 0 277 300 0 22 chr6 8656680 8656770 -173758472 + GA-rich Low_complexity Low_complexity 2 89 0 1945 158 37 23 chr6 8657101 8657455 -173757787 - MLT1A1 LTR MaLR -6 359 1 30 45 0 0 chr6 8658112 8658156 -173757086 + AT_rich Low_complexity Low_complexity 1 44 0 2198 117 0 7 chr6 8658296 8658594 -173756648 - AluSx SINE Alu -16 296 1 2232 218 16 20 chr6 8658603 8659153 -173756089 - L1MB8 LINE L1 -73 6105 5558 222 62 0 0 chr6 8659156 8659188 -173756054 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1985 140 0 0 chr6 8659188 8659467 -173755775 - AluSx SINE Alu -33 279 1 395 272 7 0 chr6 8660922 8661069 -173754173 + GA-rich Low_complexity Low_complexity 4 151 0 2588 124 15 106 chr6 8661334 8661566 -173753676 + MER4B LTR ERV1 1 253 -526 2379 98 23 0 chr6 8661566 8661871 -173753371 + AluSx SINE Alu 1 312 0 2588 124 15 106 chr6 8661871 8662313 -173752929 + MER4B LTR ERV1 253 779 0 21 36 0 0 chr6 8664488 8664516 -173750726 + AT_rich Low_complexity Low_complexity 1 28 0 2330 123 27 11 chr6 8665159 8665526 -173749716 - L1PB3 LINE L1 0 6154 5782 283 141 35 24 chr6 8665533 8665618 -173749624 + (TA)n Simple_repeat Simple_repeat 1 86 0 6404 136 17 1 chr6 8665663 8667064 -173748178 - L1PB2 LINE L1 -3 6148 4724 496 120 27 0 chr6 8667062 8667137 -173748105 - L1PB3 LINE L1 -366 5785 5709 * 180 0 0 0 chr6 8667273 8667293 -173747949 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1979 137 0 0 chr6 8667293 8667571 -173747671 - AluSg SINE Alu -32 278 1 725 193 37 7 chr6 8667602 8667737 -173747505 - Tigger7 DNA MER2_type -594 139 1 3009 118 67 28 chr6 8667740 8668276 -173746966 + L1MA8 LINE L1 5734 6290 -1 2362 210 53 31 chr6 8668905 8669117 -173746125 - MER89 LTR ERV1 0 559 353 1749 210 14 25 chr6 8669117 8669483 -173745759 + MLT1A1 LTR MaLR 4 365 0 2362 210 53 31 chr6 8669483 8669817 -173745425 - MER89 LTR ERV1 -206 353 1 225 0 0 0 chr6 8671098 8671123 -173744119 + (T)n Simple_repeat Simple_repeat 1 25 0 2194 105 7 3 chr6 8671459 8671755 -173743487 + AluSc SINE Alu 1 297 -12 1869 97 0 8 chr6 8672273 8672521 -173742721 - AluSg SINE Alu -5 305 60 217 313 17 26 chr6 8673934 8674049 -173741193 + GA-rich Low_complexity Low_complexity 5 118 0 192 40 0 0 chr6 8674133 8674158 -173741084 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1777 147 6 45 chr6 8674158 8674471 -173740771 - AluJo SINE Alu -11 301 1 249 88 0 0 chr6 8677755 8677789 -173737453 + L2 LINE L2 3267 3300 -13 210 292 96 18 chr6 8678046 8678235 -173737007 + MIR SINE MIR 3 207 -55 1772 114 19 19 chr6 8678865 8679128 -173736114 - AluSx SINE Alu -8 304 42 23 0 0 0 chr6 8680537 8680560 -173734682 + AT_rich Low_complexity Low_complexity 1 23 0 1763 171 3 7 chr6 8680586 8680879 -173734363 - AluJb SINE Alu -20 292 1 256 284 23 11 chr6 8681218 8681306 -173733936 - MER5B DNA MER1_type -86 92 4 1878 176 42 3 chr6 8681448 8681783 -173733459 - MER7A DNA MER2_type 0 346 1 260 298 0 21 chr6 8682105 8682199 -173733043 - L1MC5 LINE L1 -62 7899 7808 21 0 0 0 chr6 8683199 8683220 -173732022 + AT_rich Low_complexity Low_complexity 1 21 0 413 254 0 45 chr6 8683313 8683423 -173731819 + L1ME1 LINE L1 6035 6139 -27 706 162 0 0 chr6 8683673 8683790 -173731452 - AluJo SINE Alu -3 309 193 822 165 0 0 chr6 8683806 8683927 -173731315 - AluJo SINE Alu -187 125 5 7217 5 0 0 chr6 8684895 8685648 -173729594 + L1PA2 LINE L1 5403 6155 0 21 36 0 0 chr6 8685681 8685709 -173729533 + AT_rich Low_complexity Low_complexity 1 28 0 1548 86 10 0 chr6 8686162 8686359 -173728883 - AluY SINE Alu -15 296 98 428 341 24 12 chr6 8686765 8686929 -173728313 - MIR3 SINE MIR -5 203 38 1905 147 0 0 chr6 8688095 8688374 -173726868 + AluJb SINE Alu 5 283 -29 234 0 0 0 chr6 8688816 8688842 -173726400 + (A)n Simple_repeat Simple_repeat 1 26 0 1917 137 29 0 chr6 8689560 8689838 -173725404 - AluJo SINE Alu -26 286 1 1375 178 22 0 chr6 8690003 8690234 -173725008 - AluJo SINE Alu -76 236 1 363 64 0 0 chr6 8690987 8691034 -173724208 - MADE1 DNA Mariner 0 80 34 2101 114 4 0 chr6 8691038 8691366 -173723876 + AluSx SINE Alu 1 329 0 2271 170 83 11 chr6 8691373 8691809 -173723433 + MLT1C LTR MaLR 1 467 0 969 168 21 26 chr6 8691869 8692059 -173723183 - MER53 DNA DNA 0 189 1 1937 179 55 60 chr6 8692237 8692809 -173722433 + MLT2A2 LTR ERVL 1 554 0 248 204 0 0 chr6 8692812 8692856 -173722386 - MER2 DNA MER2_type -21 324 281 21 0 0 0 chr6 8692867 8692888 -173722354 + AT_rich Low_complexity Low_complexity 1 21 0 5786 164 65 45 chr6 8692926 8693149 -173722093 - Tigger3b DNA MER2_type -1797 1231 1014 354 23 0 0 chr6 8693149 8693192 -173722050 + (TG)n Simple_repeat Simple_repeat 1 43 0 1957 114 7 21 chr6 8693192 8693472 -173721770 - AluSc SINE Alu -33 276 1 5786 164 65 45 chr6 8693472 8693793 -173721449 - Tigger3b DNA MER2_type -2014 1014 701 2249 118 0 3 chr6 8693793 8694098 -173721144 - AluSq SINE Alu -9 304 1 5786 164 65 45 chr6 8694098 8694387 -173720855 - Tigger3b DNA MER2_type -2327 701 419 2082 133 30 0 chr6 8694387 8694687 -173720555 - AluSx SINE Alu -3 309 1 5786 164 65 45 chr6 8694687 8694826 -173720416 - Tigger3b DNA MER2_type -2609 419 284 1585 58 0 0 chr6 8694826 8695046 -173720196 - AluY SINE Alu 0 313 94 5786 164 65 45 chr6 8695046 8695274 -173719968 - Tigger3b DNA MER2_type -2744 284 1 598 103 32 142 chr6 8695274 8695419 -173719823 - MER2 DNA MER2_type -215 130 1 584 216 0 0 chr6 8695442 8695558 -173719684 + MIR3 SINE MIR 67 182 -26 2851 10 0 0 chr6 8695926 8696234 -173719008 - AluYb8 SINE Alu -10 308 1 2280 109 0 0 chr6 8696583 8696886 -173718356 - AluSx SINE Alu -9 303 1 635 183 30 98 chr6 8696998 8697162 -173718080 + AluJb SINE Alu 129 281 -31 1511 134 4 4 chr6 8697313 8697544 -173717698 + AluJo SINE Alu 1 231 -81 1604 185 20 10 chr6 8699049 8699347 -173715895 + AluJo SINE Alu 1 301 -11 218 228 18 0 chr6 8699361 8699418 -173715824 - MIR SINE MIR -55 207 150 2313 113 3 0 chr6 8699434 8699745 -173715497 + AluSx SINE Alu 1 312 0 472 271 60 13 chr6 8699930 8700081 -173715161 - MIR SINE MIR -57 205 48 629 247 78 18 chr6 8700339 8700505 -173714737 + MER5A DNA MER1_type 13 188 -1 1872 150 35 0 chr6 8700572 8700859 -173714383 - AluJb SINE Alu -11 301 5 188 404 10 10 chr6 8701576 8701680 -173713562 - MIR SINE MIR -65 143 40 248 276 164 9 chr6 8701727 8701843 -173713399 + MER5A DNA MER1_type 6 139 -50 2346 113 0 0 chr6 8701857 8702159 -173713083 + AluSq SINE Alu 1 302 -11 802 219 44 11 chr6 8702291 8702474 -173712768 + MER5A DNA MER1_type 1 189 0 232 318 61 0 chr6 8703222 8703288 -173711954 - L2 LINE L2 -55 3217 3148 1136 297 107 9 chr6 8703416 8703874 -173711368 - LTR33A LTR ERVL -14 509 7 23 0 0 0 chr6 8704115 8704138 -173711104 + AT_rich Low_complexity Low_complexity 1 23 0 968 70 0 0 chr6 8704260 8704421 -173710821 + AluSg/x SINE Alu 170 330 0 574 273 58 73 chr6 8704679 8704854 -173710388 - MER5C DNA MER1_type -54 270 99 2084 139 0 3 chr6 8704854 8705164 -173710078 + AluSx SINE Alu 1 309 -3 574 273 58 73 chr6 8705164 8705248 -173709994 - MER5C DNA MER1_type -225 99 15 2271 108 0 0 chr6 8705473 8705769 -173709473 - AluSq SINE Alu -17 296 1 276 53 0 0 chr6 8706223 8706261 -173708981 + (CA)n Simple_repeat Simple_repeat 2 39 0 534 277 15 7 chr6 8708187 8708324 -173706918 + MIR3 SINE MIR 29 166 -42 219 69 0 0 chr6 8710591 8710620 -173704622 + (A)n Simple_repeat Simple_repeat 1 29 0 1604 196 86 65 chr6 8711101 8711611 -173703631 + LTR55 LTR ERV 21 541 -7 1725 109 79 78 chr6 8711761 8712198 -173703044 + LTR64 LTR ERVK 1 499 -59 1896 155 0 16 chr6 8712404 8712714 -173702528 - AluJo SINE Alu -3 309 5 1811 172 0 10 chr6 8712723 8713020 -173702222 - AluJo SINE Alu -18 294 1 380 266 21 0 chr6 8713502 8713596 -173701646 - MER5A DNA MER1_type -85 104 9 1146 220 128 90 chr6 8713854 8714423 -173700819 + MLT1G1 LTR MaLR 2 592 -3 7988 32 0 0 chr6 8716067 8717598 -173697644 - L1PA4 LINE L1 -4 6151 4623 253 93 37 0 chr6 8717726 8717780 -173697462 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 208 218 0 36 chr6 8718543 8718598 -173696644 - L2 LINE L2 0 3313 3261 817 301 18 11 chr6 8719151 8719437 -173695805 + L1ME LINE L1 16 303 -5767 915 248 66 33 chr6 8719442 8719829 -173695413 + L1ME LINE L1 726 1163 -4982 2575 272 65 26 chr6 8719842 8721034 -173694208 + L1ME LINE L1 1261 2543 -3537 2387 174 69 21 chr6 8721034 8721470 -173693772 + MSTB2 LTR MaLR 1 457 0 2575 272 65 26 chr6 8721470 8721911 -173693331 + L1ME LINE L1 2543 2965 -3115 782 200 0 0 chr6 8721927 8722047 -173693195 + FLAM_C SINE Alu 2 121 -22 809 118 46 14 chr6 8722057 8722677 -173692565 + (TA)n Simple_repeat Simple_repeat 1 640 0 430 244 29 96 chr6 8722678 8722887 -173692355 + L1M4 LINE L1 4647 4841 -1305 409 165 25 0 chr6 8722885 8722964 -173692278 + L1MC4 LINE L1 7962 8042 0 * 523 304 88 20 chr6 8723514 8723764 -173691478 + LTR16C LTR ERVL 225 491 0 422 261 152 62 chr6 8723769 8724297 -173690945 + L1ME LINE L1 2860 3434 -2646 254 350 44 37 chr6 8724486 8724780 -173690462 + L1ME LINE L1 3915 4210 -1870 422 286 111 78 chr6 8724793 8724984 -173690258 - MLT1J2 LTR MaLR -3 447 264 652 193 64 150 chr6 8724984 8725217 -173690025 - MER58C DNA MER1_type -2 213 1 422 286 111 78 chr6 8725217 8725423 -173689819 - MLT1J2 LTR MaLR -186 264 37 28 0 0 0 chr6 8725456 8725484 -173689758 + AT_rich Low_complexity Low_complexity 1 28 0 310 298 35 43 chr6 8725627 8725768 -173689474 + L1ME LINE L1 4401 4540 -1540 1926 152 0 7 chr6 8725769 8726059 -173689183 + AluJb SINE Alu 1 288 -24 22 0 0 0 chr6 8726189 8726211 -173689031 + AT_rich Low_complexity Low_complexity 1 22 0 242 278 97 16 chr6 8726313 8726436 -173688806 + MIR SINE MIR 34 171 -81 273 222 0 0 chr6 8726604 8726667 -173688575 + GA-rich Low_complexity Low_complexity 2 64 0 288 274 51 33 chr6 8726730 8726855 -173688387 + MIR SINE MIR 35 164 -72 519 250 48 48 chr6 8726869 8726971 -173688271 - MIR SINE MIR 0 262 161 228 67 0 0 chr6 8726971 8727001 -173688241 + (CAT)n Simple_repeat Simple_repeat 1 30 0 519 250 48 48 chr6 8727001 8727106 -173688136 - MIR SINE MIR -100 162 55 2230 64 7 3 chr6 8727189 8727505 -173687737 + AluY SINE Alu 1 317 0 220 280 0 0 chr6 8727662 8727712 -173687530 + MIR SINE MIR 201 250 -12 227 268 12 24 chr6 8727729 8727811 -173687431 + L2 LINE L2 3192 3272 0 186 143 0 0 chr6 8728716 8728751 -173686491 + (GA)n Simple_repeat Simple_repeat 1 35 0 2130 111 0 4 chr6 8729752 8730064 -173685178 - AluSc SINE Alu 0 311 1 1585 192 47 25 chr6 8730948 8731349 -173683893 - L1MDb LINE L1 -5197 1212 803 902 126 35 0 chr6 8731353 8731527 -173683715 + CT-rich Low_complexity Low_complexity 1 180 0 303 53 0 0 chr6 8731527 8731565 -173683677 + (TTTCC)n Simple_repeat Simple_repeat 4 41 0 2010 128 13 3 chr6 8731571 8731876 -173683366 - AluSx SINE Alu -4 308 1 1826 205 82 45 chr6 8731879 8732512 -173682730 - L1MDb LINE L1 -5595 814 27 369 323 51 31 chr6 8733223 8733418 -173681824 + L3 LINE CR1 1096 1294 -283 229 250 78 16 chr6 8733427 8733491 -173681751 - MER5A DNA MER1_type -108 81 14 2401 105 0 0 chr6 8733526 8733832 -173681410 - AluSq SINE Alu -7 306 1 228 204 8 45 chr6 8733919 8734051 -173681191 + GA-rich Low_complexity Low_complexity 4 130 0 700 238 58 0 chr6 8734487 8734659 -173680583 - MER5A DNA MER1_type 0 189 8 264 358 104 31 chr6 8735112 8735471 -173679771 + L2 LINE L2 2722 3054 -218 2132 136 3 0 chr6 8735471 8735779 -173679463 - AluSx SINE Alu -3 309 1 264 358 104 31 chr6 8735779 8735851 -173679391 + L2 LINE L2 3054 3119 -153 538 227 18 0 chr6 8735851 8735961 -173679281 - MER81 DNA DNA -2 112 1 264 358 104 31 chr6 8735961 8736025 -173679217 + L2 LINE L2 3119 3255 -17 1117 208 95 72 chr6 8737401 8737624 -173677618 - MLT1H1 LTR MaLR 0 555 318 2211 196 44 40 chr6 8737624 8738125 -173677117 + MLT1D LTR MaLR 1 503 -2 1117 208 95 72 chr6 8738125 8738290 -173676952 - MLT1H1 LTR MaLR -237 318 158 408 266 11 11 chr6 8738300 8738394 -173676848 - MLT1H1 LTR MaLR -483 107 14 2328 151 54 35 chr6 8739848 8740272 -173674970 - MSTB1 LTR MaLR 0 432 1 594 231 68 107 chr6 8740616 8740668 -173674574 - MLT1J LTR MaLR 0 511 458 1619 164 22 4 chr6 8740668 8740943 -173674299 + AluJb SINE Alu 1 280 -32 594 231 68 107 chr6 8740943 8741245 -173673997 - MLT1J LTR MaLR -53 458 171 648 211 0 0 chr6 8742824 8742938 -173672304 - AluY SINE Alu -81 230 117 213 94 0 0 chr6 8743505 8743537 -173671705 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1994 158 0 0 chr6 8743554 8743851 -173671391 - AluJb SINE Alu -15 297 1 294 276 32 83 chr6 8744231 8744448 -173670794 - L2 LINE L2 -252 3061 2856 1503 217 116 8 chr6 8744627 8745005 -173670237 + L1MA4A LINE L1 5623 6041 -262 * 1924 150 32 0 chr6 8744779 8745093 -173670149 + L1PB4 LINE L1 5810 6133 -23 620 66 0 11 chr6 8745099 8745190 -173670052 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 455 280 24 24 chr6 8745310 8745478 -173669764 - HAL1 LINE L1 -122 2385 2218 306 243 98 35 chr6 8745483 8745656 -173669586 - HAL1 LINE L1 -338 2169 1986 296 258 143 62 chr6 8745675 8745884 -173669358 - HAL1 LINE L1 -1862 645 420 351 147 40 133 chr6 8745919 8746069 -173669173 - HAL1 LINE L1 -2323 184 49 2114 94 0 69 chr6 8749249 8749569 -173665673 + AluSx SINE Alu 1 298 -14 229 279 25 13 chr6 8749995 8750074 -173665168 + L2 LINE L2 3232 3311 -2 2109 109 3 0 chr6 8750156 8750449 -173664793 - AluSx SINE Alu -18 294 1 513 225 53 64 chr6 8750583 8750770 -173664472 + pTR5 LTR ERV1 743 927 -1511 3221 144 217 60 chr6 8751071 8751785 -173663457 + LTR12 LTR ERV1 1 826 0 674 240 17 9 chr6 8751975 8752204 -173663038 - L1MB1 LINE L1 -1 6167 5879 2585 154 39 15 chr6 8752233 8752613 -173662629 + L1MB1 LINE L1 5403 5798 -370 342 67 0 0 chr6 8752613 8752658 -173662584 + (TA)n Simple_repeat Simple_repeat 2 46 0 2585 154 39 15 chr6 8752658 8752745 -173662497 + L1MB1 LINE L1 5798 5881 -287 225 319 53 53 chr6 8752747 8752860 -173662382 - MIR SINE MIR -99 163 51 410 241 0 0 chr6 8752898 8753006 -173662236 - L1M4 LINE L1 -1888 4258 4151 1634 248 21 19 chr6 8753030 8753454 -173661788 - L1M4 LINE L1 -1949 4197 3773 449 327 91 44 chr6 8753766 8754151 -173661091 + MLT1L LTR MaLR 112 514 -101 214 288 76 0 chr6 8754333 8754399 -173660843 + MER5A DNA MER1_type 115 185 -4 216 0 0 0 chr6 8755125 8755149 -173660093 + (CA)n Simple_repeat Simple_repeat 1 24 0 2127 116 3 28 chr6 8755688 8756007 -173659235 - AluSx SINE Alu -1 311 1 6439 173 34 3 chr6 8756018 8757474 -173657768 - L1MC1 LINE L1 0 6333 4812 522 0 0 0 chr6 8757474 8757532 -173657710 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 6439 173 34 3 chr6 8757532 8757725 -173657517 - L1MC1 LINE L1 -1521 4812 4626 276 313 108 33 chr6 8757801 8758015 -173657227 + L2 LINE L2 1766 1995 -1319 346 313 38 15 chr6 8758247 8758378 -173656864 + L2 LINE L2 3137 3270 -2 1515 230 86 24 chr6 8759251 8760285 -173654957 - L1MB8 LINE L1 -10 6168 4944 218 291 0 0 chr6 8760830 8760885 -173654357 - L2 LINE L2 -81 3191 3137 193 244 209 0 chr6 8761305 8761391 -173653851 + MIR SINE MIR 41 144 -118 1691 178 3 22 chr6 8762797 8763111 -173652131 - AluJb SINE Alu 0 312 5 2584 164 22 22 chr6 8764490 8764947 -173650295 - LTR32 LTR ERVL 0 471 15 232 304 174 50 chr6 8765706 8765982 -173649260 + L2 LINE L2 2887 3204 -68 249 33 0 0 chr6 8765982 8766012 -173649230 + (TC)n Simple_repeat Simple_repeat 1 30 0 232 304 174 50 chr6 8766012 8766034 -173649208 + L2 LINE L2 3204 3222 -50 2000 118 29 0 chr6 8766284 8766564 -173648678 - AluSx SINE Alu -19 293 6 26 0 0 0 chr6 8766810 8766836 -173648406 + AT_rich Low_complexity Low_complexity 1 26 0 1403 121 0 0 chr6 8766855 8767037 -173648205 - AluSx SINE Alu -130 182 1 357 24 0 0 chr6 8767520 8767562 -173647680 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 2471 28 0 0 chr6 8769021 8769420 -173645822 - L1P2 LINE L1 -608 5547 5149 310 224 35 24 chr6 8769696 8769781 -173645461 + L1MC2 LINE L1 5239 5324 -822 997 185 33 63 chr6 8769793 8770063 -173645179 + L1MC3 LINE L1 6564 6825 -960 5298 62 24 1 chr6 8770163 8770821 -173644421 - LTR12 LTR ERV1 -40 674 2 2496 204 9 8 chr6 8770821 8771351 -173643891 + L1 LINE L1 4534 5064 -1082 7637 134 45 3 chr6 8771460 8772808 -173642434 - L1M1 LINE L1 -3927 3638 2233 1186 187 103 11 chr6 8772915 8773177 -173642065 + L1MC2 LINE L1 5777 6062 -282 273 77 0 0 chr6 8773192 8773231 -173642011 + L1MA3 LINE L1 6267 6305 0 489 307 62 36 chr6 8773261 8773710 -173641532 - L1MDa LINE L1 -4815 1725 1265 1528 258 13 12 chr6 8775069 8775605 -173639637 + MLT2F LTR ERVL 3 584 -79 1119 178 50 78 chr6 8775793 8776074 -173639168 + L1MB1 LINE L1 5788 6060 -108 909 122 7 7 chr6 8776088 8776236 -173639006 + AluSg/x SINE Alu 163 310 0 363 170 44 41 chr6 8776274 8776403 -173638839 + L1MB1 LINE L1 6044 6167 -1 211 292 36 36 chr6 8776412 8776549 -173638693 + MIR SINE MIR 83 219 -43 357 24 0 0 chr6 8776648 8776690 -173638552 + (CA)n Simple_repeat Simple_repeat 1 42 0 937 174 37 5 chr6 8777121 8777311 -173637931 + MLT2B1 LTR ERVL 1 196 -324 372 85 0 0 chr6 8778757 8778804 -173636438 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1995 122 59 0 chr6 8778804 8779090 -173636152 - AluSx SINE Alu -9 303 1 279 0 0 0 chr6 8779278 8779309 -173635933 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 253 0 13 chr6 8779309 8779388 -173635854 - L1MC4 LINE L1 -1343 6699 6622 703 325 25 37 chr6 8779462 8779785 -173635457 - L3 LINE CR1 -15 1562 1244 542 221 190 58 chr6 8780041 8780267 -173634975 - L2 LINE L2 0 3313 3058 422 302 17 0 chr6 8780357 8780473 -173634769 - L3 LINE CR1 -420 1157 1040 3509 188 38 17 chr6 8780776 8781426 -173633816 + L1MC3 LINE L1 7058 7726 -59 1962 165 24 126 chr6 8781426 8781887 -173633355 + MLT2D LTR ERVL 1 414 0 3509 188 38 17 chr6 8781887 8781948 -173633294 + L1MC3 LINE L1 7726 7784 -1 243 246 18 0 chr6 8783930 8783987 -173631255 + L2 LINE L2 3214 3271 -1 5249 199 37 124 chr6 8784913 8786869 -173628373 - L1MA6 LINE L1 0 6300 4517 1267 150 17 0 chr6 8786869 8787102 -173628140 + Tigger1 DNA MER2_type 2 238 -2180 5249 199 37 124 chr6 8787102 8788201 -173627041 - L1MA6 LINE L1 -1783 4517 3324 * 24884 133 10 18 chr6 8788182 8790593 -173624649 - L1PA8A LINE L1 -1 6445 4017 2349 84 0 16 chr6 8790593 8790901 -173624341 - AluY SINE Alu -4 307 5 24884 133 10 18 chr6 8790901 8791394 -173623848 - L1PA8A LINE L1 -2429 4017 3522 2210 71 7 4 chr6 8791394 8791711 -173623531 + AluY SINE Alu 1 318 0 24884 133 10 18 chr6 8791711 8795239 -173620003 - L1PA8A LINE L1 -2924 3522 2 2426 184 58 11 chr6 8795238 8795890 -173619352 - L1MA6 LINE L1 -2791 3355 2673 * 29 0 0 0 chr6 8795943 8795972 -173619270 + AT_rich Low_complexity Low_complexity 1 29 0 1573 199 3 14 chr6 8796015 8796306 -173618936 + AluJo SINE Alu 1 288 -24 732 233 44 0 chr6 8796329 8796557 -173618685 + L1MD1 LINE L1 5031 5268 -878 919 172 49 0 chr6 8796603 8796766 -173618476 + FRAM SINE Alu 1 163 -13 3038 161 58 67 chr6 8796767 8797332 -173617910 + L1MD1 LINE L1 5284 5841 -401 2038 121 9 16 chr6 8797332 8797647 -173617595 + AluSq SINE Alu 1 313 0 3038 161 58 67 chr6 8797647 8797893 -173617349 + L1MD1 LINE L1 5841 6088 -154 279 304 36 53 chr6 8797887 8798134 -173617108 - L1MC/D LINE L1 -2226 5582 5340 * 1995 163 23 3 chr6 8799467 8799816 -173615426 - MLT1A1 LTR MaLR 0 365 10 1764 175 117 51 chr6 8801219 8801671 -173613571 + LTR44 LTR ERV1 1 482 -37 459 0 0 0 chr6 8801672 8801723 -173613519 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2441 176 119 52 chr6 8801723 8802466 -173612776 - LTR1B LTR ERV1 0 785 2 660 87 0 0 chr6 8802466 8802558 -173612684 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 1567 140 27 89 chr6 8802576 8802869 -173612373 - AluJo SINE Alu -37 275 1 227 171 0 0 chr6 8802869 8802910 -173612332 + LTR44 LTR ERV1 479 519 0 3403 211 115 27 chr6 8803734 8804884 -173610358 - Zaphod DNA AcHobo -3 4028 2741 2277 91 7 7 chr6 8804884 8805181 -173610061 - AluSg SINE Alu -13 297 1 3403 211 115 27 chr6 8805181 8805382 -173609860 - Zaphod DNA AcHobo -1290 2741 2559 946 283 162 13 chr6 8805395 8805791 -173609451 - Zaphod DNA AcHobo -3475 556 102 2263 74 0 3 chr6 8805792 8806100 -173609142 - AluY SINE Alu 0 307 1 207 0 0 0 chr6 8806275 8806298 -173608944 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2742 39 3 3 chr6 8806298 8806632 -173608610 - L1PA8 LINE L1 -17 6155 5822 222 91 0 0 chr6 8806704 8806737 -173608505 + (TG)n Simple_repeat Simple_repeat 1 33 0 812 224 50 0 chr6 8807466 8807645 -173607597 - MER5A DNA MER1_type 0 189 2 3332 70 2 11 chr6 8808045 8808488 -173606754 + L1PA10 LINE L1 5719 6157 -11 183 80 0 0 chr6 8811011 8811036 -173604206 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 212 180 34 11 chr6 8811446 8811535 -173603707 + (TA)n Simple_repeat Simple_repeat 2 92 0 2459 56 16 0 chr6 8811967 8812272 -173602970 + AluY SINE Alu 1 310 -1 2126 156 150 25 chr6 8813344 8813871 -173601371 - L1MB5 LINE L1 -6 6168 5576 200 313 29 16 chr6 8814019 8814117 -173601125 - MIR SINE MIR -64 144 46 1073 206 0 0 chr6 8815193 8815402 -173599840 - MER3 DNA MER1_type 0 209 1 181 346 44 44 chr6 8815464 8815600 -173599642 - MIR3 SINE MIR -6 202 67 2166 92 3 36 chr6 8815708 8816012 -173599230 - AluSq SINE Alu -19 294 1 283 372 117 21 chr6 8816020 8816671 -173598571 + L2 LINE L2 1759 2471 -843 479 208 19 0 chr6 8816671 8816777 -173598465 + MER81 DNA DNA 1 108 -6 411 38 0 0 chr6 8817422 8817475 -173597767 + (CA)n Simple_repeat Simple_repeat 2 54 0 531 331 108 30 chr6 8818310 8818818 -173596424 + L2 LINE L2 2032 2579 -735 231 279 279 13 chr6 8818820 8819046 -173596196 + L2 LINE L2 3028 3313 0 363 194 0 0 chr6 8819815 8819882 -173595360 - MIR SINE MIR 0 262 196 473 252 18 0 chr6 8820344 8820455 -173594787 - MIR SINE MIR -97 165 53 808 138 0 38 chr6 8820523 8820682 -173594560 + L1PA16 LINE L1 5913 6065 -101 402 248 67 0 chr6 8820819 8820924 -173594318 + MIR SINE MIR 150 261 -1 2067 125 7 14 chr6 8820970 8821267 -173593975 + AluSx SINE Alu 1 295 -17 317 254 118 35 chr6 8822249 8822418 -173592824 + L1ME4a LINE L1 5933 6115 -6 261 338 156 23 chr6 8822528 8822836 -173592406 + L2 LINE L2 2827 3175 -97 1723 127 167 9 chr6 8824680 8825004 -173590238 + THE1C LTR MaLR 1 375 0 10711 106 7 42 chr6 8825004 8826641 -173588601 + THE1C-int LTR MaLR 1 1580 0 2071 111 72 28 chr6 8826641 8827000 -173588242 + THE1C LTR MaLR 1 375 0 460 341 49 0 chr6 8827153 8827317 -173587925 + MIR SINE MIR 62 233 -29 505 206 89 67 chr6 8827370 8827550 -173587692 + L2 LINE L2 1605 1788 -1526 2603 68 3 3 chr6 8827596 8827935 -173587307 + L1PA6 LINE L1 5815 6153 -1 195 129 0 0 chr6 8828062 8828093 -173587149 + (CA)n Simple_repeat Simple_repeat 1 31 0 1769 271 65 52 chr6 8828294 8828966 -173586276 + L2 LINE L2 1811 2491 -823 871 227 49 0 chr6 8828966 8829169 -173586073 + MLT1F LTR MaLR 1 213 -354 1413 189 73 9 chr6 8829171 8829499 -173585743 - MLT1A2 LTR MaLR 0 374 26 1290 214 107 0 chr6 8829530 8829839 -173585403 + MLT1F LTR MaLR 199 540 -2 1313 261 177 13 chr6 8829841 8830543 -173584699 + L2 LINE L2 2487 3313 0 212 328 9 78 chr6 8830818 8830934 -173584308 + L3 LINE CR1 1431 1538 -39 1916 115 124 18 chr6 8831445 8831784 -173583458 - THE1C LTR MaLR 0 375 1 354 214 0 0 chr6 8832792 8832881 -173582361 + (CA)n Simple_repeat Simple_repeat 2 90 0 198 294 76 51 chr6 8832899 8833032 -173582210 - L2 LINE L2 -1220 2094 1953 1706 167 17 10 chr6 8833032 8833320 -173581922 + AluJo SINE Alu 3 292 -20 198 294 76 51 chr6 8833320 8833383 -173581859 - L2 LINE L2 -1361 1953 1893 370 256 142 11 chr6 8833390 8833566 -173581676 + MER58C DNA MER1_type 1 199 -16 224 302 28 47 chr6 8833727 8833833 -173581409 - MER5B DNA MER1_type -12 166 63 1939 139 0 0 chr6 8833836 8834109 -173581133 - AluSx SINE Alu 0 312 40 219 200 0 0 chr6 8834313 8834353 -173580889 - L2 LINE L2 -10 3303 3264 209 108 27 0 chr6 8834459 8834496 -173580746 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 6710 52 38 0 chr6 8834695 8835916 -173579326 + L1PA6 LINE L1 4869 6154 0 619 257 138 5 chr6 8836823 8837041 -173578201 + MIR SINE MIR 16 262 0 1454 152 41 104 chr6 8837335 8837452 -173577790 + AluJo SINE Alu 1 124 -188 207 0 0 0 chr6 8837452 8837475 -173577767 + (TC)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr6 8837476 8837522 -173577720 + (TA)n Simple_repeat Simple_repeat 2 47 0 1454 152 41 104 chr6 8837522 8837718 -173577524 + AluJo SINE Alu 123 296 -16 2688 199 38 5 chr6 8837744 8838346 -173576896 - L1MB7 LINE L1 -43 6141 5520 265 359 0 0 chr6 8838927 8839019 -173576223 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 763 313 100 9 chr6 8840756 8841175 -173574067 + L2 LINE L2 1854 2310 -1004 1861 186 36 46 chr6 8841187 8841740 -173573502 - MLT2A2 LTR ERVL 0 554 1 494 319 160 10 chr6 8841761 8842434 -173572808 + L2 LINE L2 2335 3210 -103 201 176 0 118 chr6 8842518 8842569 -173572673 + L2 LINE L2 3262 3306 -7 254 143 0 0 chr6 8844135 8844177 -173571065 + MLT1A2 LTR MaLR 2 43 -331 265 174 0 0 chr6 8844178 8844224 -173571018 + MLT1A2 LTR MaLR 158 203 -162 835 190 72 5 chr6 8844258 8844453 -173570789 + MLT1A2 LTR MaLR 166 373 -1 318 303 37 0 chr6 8844745 8844854 -173570388 - MIR SINE MIR -17 245 133 226 288 68 14 chr6 8844898 8844971 -173570271 - MIR SINE MIR -84 124 48 519 308 80 83 chr6 8845727 8846088 -173569154 - L2 LINE L2 -40 3232 2873 867 320 76 15 chr6 8846223 8846617 -173568625 - L2 LINE L2 -649 2665 2248 191 279 77 48 chr6 8847149 8847253 -173567989 - L2 LINE L2 -40 3273 3167 2161 127 0 13 chr6 8847598 8847914 -173567328 + AluSx SINE Alu 1 312 0 2157 83 42 10 chr6 8848537 8848825 -173566417 + AluSx SINE Alu 1 297 -15 282 29 0 0 chr6 8849515 8849550 -173565692 + (TG)n Simple_repeat Simple_repeat 2 36 0 35 24 0 0 chr6 8849679 8849721 -173565521 + AT_rich Low_complexity Low_complexity 1 42 0 2091 136 0 16 chr6 8849794 8850110 -173565132 + AluJb SINE Alu 1 311 -1 21 0 0 0 chr6 8850519 8850540 -173564702 + AT_rich Low_complexity Low_complexity 1 21 0 251 320 40 0 chr6 8850995 8851070 -173564172 + L2 LINE L2 3150 3227 -45 290 262 95 32 chr6 8851315 8851441 -173563801 + MER63A DNA MER1_type 69 202 -8 251 203 257 0 chr6 8852370 8852444 -173562798 + MER63 DNA MER1_type 1 719 -117 1148 171 38 79 chr6 8852444 8852760 -173562482 - MER58B DNA MER1_type 0 341 39 265 266 46 15 chr6 8852761 8852887 -173562355 + MER63 DNA MER1_type 695 1054 -8 2312 205 31 98 chr6 8853071 8853809 -173561433 - LTR8 LTR ERV1 -2 689 1 314 214 0 67 chr6 8854038 8854127 -173561115 - MER94 DNA DNA -40 94 12 367 202 32 11 chr6 8854773 8854867 -173560375 + MER103 DNA DNA 68 163 -3 1728 178 3 28 chr6 8855061 8855381 -173559861 - AluJb SINE Alu 0 312 1 388 312 159 6 chr6 8856205 8856362 -173558880 + MER5A DNA MER1_type 9 189 0 193 304 145 0 chr6 8856384 8856453 -173558789 + MIR SINE MIR 119 197 -65 1666 161 25 6 chr6 8856609 8856933 -173558309 + MLT1B LTR MaLR 1 330 -60 948 229 78 0 chr6 8856973 8857218 -173558024 + Tigger7 DNA MER2_type 1 264 -469 435 248 10 0 chr6 8857213 8857314 -173557928 + Tigger7 DNA MER2_type 2386 2487 0 * 187 235 41 85 chr6 8857827 8857932 -173557310 - MIR SINE MIR -66 196 118 1183 126 9 19 chr6 8857932 8858146 -173557096 + L1MA8 LINE L1 6076 6287 -4 187 235 41 85 chr6 8858146 8858192 -173557050 - MIR SINE MIR -144 118 71 1926 137 17 10 chr6 8860710 8861002 -173554240 + AluSx SINE Alu 1 294 -18 1091 191 70 101 chr6 8861388 8861786 -173553456 - MLT1B LTR MaLR 0 390 5 414 302 99 26 chr6 8862171 8862363 -173552879 + MIR3 SINE MIR 2 207 -1 349 322 16 71 chr6 8863804 8863987 -173551255 + MER5A DNA MER1_type 17 189 0 3070 211 49 54 chr6 8864041 8865903 -173549339 + L1ME1 LINE L1 4307 6161 -5 233 303 132 0 chr6 8866703 8866779 -173548463 - MIR SINE MIR -90 118 33 2652 119 5 121 chr6 8867246 8867330 -173547912 + MER84 LTR ERVI 1 93 -414 2298 184 44 75 chr6 8867330 8867961 -173547281 - LTR9 LTR ERV1 0 612 1 2652 119 5 121 chr6 8867961 8868448 -173546794 + MER84 LTR ERVI 93 506 -1 221 319 180 50 chr6 8868473 8868978 -173546264 + L2 LINE L2 2214 2784 -530 1190 184 104 43 chr6 8869534 8869908 -173545334 - L1MC2 LINE L1 0 6344 5948 1906 132 0 35 chr6 8869908 8870196 -173545046 - AluSx SINE Alu -11 301 24 333 295 62 62 chr6 8872183 8872410 -173542832 - L1ME3A LINE L1 -2 6164 5938 886 254 102 19 chr6 8872451 8873149 -173542093 - L1ME3A LINE L1 -218 5946 5152 * 1741 161 28 43 chr6 8873137 8873559 -173541683 - L1MD3 LINE L1 0 7995 7580 1101 285 85 34 chr6 8873754 8874261 -173540981 - L1ME3A LINE L1 -1225 4921 4350 2274 110 0 0 chr6 8874261 8874560 -173540682 - AluSx SINE Alu -13 299 1 1101 285 85 34 chr6 8874560 8874926 -173540316 - L1ME3A LINE L1 -1796 4350 4004 462 282 76 15 chr6 8874932 8875195 -173540047 - L1ME3A LINE L1 -2677 3469 3173 1731 174 3 40 chr6 8875195 8875516 -173539726 - AluJo SINE Alu -3 309 1 462 282 76 15 chr6 8875516 8875645 -173539597 - L1ME3A LINE L1 -2973 3173 3053 269 258 222 24 chr6 8875668 8875835 -173539407 - MIR SINE MIR -43 219 20 386 330 164 30 chr6 8876047 8876622 -173538620 + L2 LINE L2 1979 2630 -684 237 289 26 0 chr6 8877253 8877329 -173537913 - MIR SINE MIR -88 174 97 2031 152 11 19 chr6 8877541 8877909 -173537333 - MER47A DNA MER2_type -1 365 1 253 260 80 20 chr6 8878577 8878677 -173536565 + MIR SINE MIR 37 142 -66 255 140 0 0 chr6 8879306 8879356 -173535886 + (GA)n Simple_repeat Simple_repeat 1 50 0 421 288 77 56 chr6 8879618 8879955 -173535287 + L1MEd LINE L1 811 1154 -4965 472 265 114 30 chr6 8881488 8881654 -173533588 + MER5A DNA MER1_type 9 188 -1 322 316 120 8 chr6 8881724 8881841 -173533401 + L2 LINE L2 3143 3272 0 546 229 50 69 chr6 8882190 8882408 -173532834 + MER21B LTR ERV1 183 396 -467 601 165 106 41 chr6 8882704 8882729 -173532513 - Ricksha DNA DNA -2880 366 344 2770 72 59 56 chr6 8882729 8882768 -173532474 - MLT2A1 LTR ERVL 0 444 407 745 62 39 0 chr6 8882768 8882897 -173532345 + (TA)n Simple_repeat Simple_repeat 2 135 0 2770 72 59 56 chr6 8882897 8883300 -173531942 - MLT2A1 LTR ERVL -37 407 1 29371 58 11 3 chr6 8883300 8888858 -173526384 - HERVL-A1 LTR ERVL 0 5654 1 601 165 106 41 chr6 8883300 8883444 -173531798 - Ricksha DNA DNA -2902 344 186 * 2575 75 35 132 chr6 8888858 8889350 -173525892 - MLT2A1 LTR ERVL 0 444 1 1324 276 86 60 chr6 8889351 8889982 -173525260 - MER21B LTR ERV1 -193 670 24 198 0 0 0 chr6 8890095 8890117 -173525125 + (TTG)n Simple_repeat Simple_repeat 1 22 0 1058 180 38 38 chr6 8890391 8890652 -173524590 - MLT1A1 LTR MaLR 0 365 105 1730 169 77 6 chr6 8891426 8891764 -173523478 + MLT1A1 LTR MaLR 3 364 -1 30 0 0 0 chr6 8891869 8891899 -173523343 + AT_rich Low_complexity Low_complexity 1 30 0 2147 148 3 26 chr6 8892077 8892422 -173522820 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr6 8894237 8894260 -173520982 + AT_rich Low_complexity Low_complexity 1 23 0 297 213 47 147 chr6 8894497 8894708 -173520534 - L2 LINE L2 -2 3311 3122 222 253 218 59 chr6 8894945 8895147 -173520095 + L2 LINE L2 3039 3272 0 303 305 146 7 chr6 8895244 8895395 -173519847 + MLT1J LTR MaLR 106 277 -234 684 201 107 0 chr6 8895456 8895625 -173519617 + MIR SINE MIR 2 188 -74 206 296 157 17 chr6 8895787 8895902 -173519340 + L2 LINE L2 3137 3267 -5 21 89 0 0 chr6 8897295 8897351 -173517891 + AT_rich Low_complexity Low_complexity 1 56 0 207 0 0 0 chr6 8897438 8897461 -173517781 + (CAG)n Simple_repeat Simple_repeat 1 23 0 620 301 53 22 chr6 8897473 8897699 -173517543 - MIR SINE MIR -27 235 3 258 32 0 0 chr6 8897932 8897963 -173517279 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 258 74 39 chr6 8898035 8898300 -173516942 + L1M4 LINE L1 4361 4622 -1524 359 274 201 11 chr6 8898569 8898843 -173516399 + L1M4 LINE L1 4977 5302 -844 29 47 0 0 chr6 8900746 8900789 -173514453 + AT_rich Low_complexity Low_complexity 1 43 0 2140 114 0 0 chr6 8901454 8901764 -173513478 - AluSg SINE Alu 0 310 1 1075 170 0 0 chr6 8902446 8902617 -173512625 - AluSg/x SINE Alu -9 303 133 2311 73 3 27 chr6 8903721 8904021 -173511221 - AluSq SINE Alu -20 293 1 22 0 0 0 chr6 8904550 8904572 -173510670 + AT_rich Low_complexity Low_complexity 1 22 0 269 306 0 0 chr6 8904842 8904914 -173510328 + MIR3 SINE MIR 85 156 -52 1120 160 5 5 chr6 8905607 8905801 -173509441 - MER46B DNA MER2_type 0 236 43 2470 93 8 8 chr6 8905801 8906154 -173509088 + THE1A LTR MaLR 1 353 -2 4951 115 24 0 chr6 8906157 8906876 -173508366 + THE1A-int LTR MaLR 1 736 -844 560 158 185 7 chr6 8906893 8907039 -173508203 - MER46B DNA MER2_type -189 47 1 29 60 0 0 chr6 8908329 8908379 -173506863 + AT_rich Low_complexity Low_complexity 1 50 0 1939 152 30 0 chr6 8910059 8910179 -173505063 + AluJo SINE Alu 1 116 -196 252 0 0 0 chr6 8910179 8910207 -173505035 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1939 152 30 0 chr6 8910207 8910388 -173504854 + AluJo SINE Alu 116 311 -1 584 270 110 30 chr6 8911972 8912209 -173503033 + MIR SINE MIR 2 257 -5 648 270 128 47 chr6 8912306 8912650 -173502592 + L2 LINE L2 2244 2615 -699 29 0 0 0 chr6 8913491 8913520 -173501722 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 8913624 8913645 -173501597 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 20 0 chr6 8914871 8914921 -173500321 + CT-rich Low_complexity Low_complexity 2 52 0 579 302 156 21 chr6 8916336 8916757 -173498485 + L2 LINE L2 2581 3070 -243 2150 107 4 0 chr6 8916939 8917220 -173498022 - AluSx SINE Alu -28 284 3 561 339 103 21 chr6 8917448 8917787 -173497455 + LTR16C LTR ERVL 123 489 -2 1078 113 17 0 chr6 8918168 8918345 -173496897 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 579 194 22 22 chr6 8918362 8918542 -173496700 + CT-rich Low_complexity Low_complexity 1 180 0 1814 135 57 7 chr6 8918542 8918824 -173496418 - AluSx SINE Alu -16 296 1 483 303 7 7 chr6 8918844 8918986 -173496256 + HERVL LTR ERVL 4471 4612 -1042 396 0 0 0 chr6 8919047 8919091 -173496151 + (CA)n Simple_repeat Simple_repeat 2 45 0 508 279 7 0 chr6 8919254 8919390 -173495852 - L2 LINE L2 -1208 2106 1970 700 313 36 24 chr6 8919440 8919689 -173495553 + MIR SINE MIR 9 260 -2 501 293 54 20 chr6 8919876 8920023 -173495219 - L2 LINE L2 -4 3268 3117 1508 172 19 14 chr6 8920463 8920545 -173494697 - MER33 DNA MER1_type -2261 324 244 2243 99 0 7 chr6 8920545 8920847 -173494395 + AluSx SINE Alu 1 300 -12 1508 172 19 14 chr6 8920847 8921099 -173494143 - MER33 DNA MER1_type -2341 244 1 1749 157 3 63 chr6 8921155 8921486 -173493756 + AluJb SINE Alu 1 311 -1 1854 128 75 12 chr6 8922346 8922681 -173492561 - MER46B DNA MER2_type -1 235 5 631 157 26 9 chr6 8922723 8922838 -173492404 - MLT1D LTR MaLR 0 505 389 527 216 0 0 chr6 8922839 8922941 -173492301 + FLAM_C SINE Alu 5 106 -37 206 31 0 31 chr6 8922966 8922998 -173492244 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1043 206 58 51 chr6 8922998 8923048 -173492194 - MLT1D LTR MaLR -102 403 355 4265 108 15 11 chr6 8923048 8923658 -173491584 - LTR9 LTR ERV1 0 612 1 1043 206 58 51 chr6 8923658 8923883 -173491359 - MLT1D LTR MaLR -150 355 126 4907 57 2 0 chr6 8923886 8924496 -173490746 - L1PA6 LINE L1 0 6154 5544 8064 69 3 2 chr6 8924496 8925560 -173489682 - L1PA6 LINE L1 -3382 2764 1700 4584 97 14 6 chr6 8925568 8926226 -173489016 - PABL_B LTR ERV1 0 667 5 332 307 104 43 chr6 8926279 8926442 -173488800 - LTR16C LTR ERVL -223 268 96 2102 254 11 20 chr6 8926452 8926686 -173488556 - MER90 LTR ERV1 -25 550 315 2290 96 3 3 chr6 8926686 8926989 -173488253 - AluSg SINE Alu -7 303 1 2102 254 11 20 chr6 8926989 8927309 -173487933 - MER90 LTR ERV1 -260 315 1 1955 229 44 44 chr6 8927458 8927978 -173487264 - MLT1E3 LTR MaLR 0 624 105 1872 196 35 84 chr6 8928012 8928291 -173486951 - L1ME1 LINE L1 -306 5860 5622 2337 87 6 6 chr6 8928291 8928602 -173486640 + AluSq SINE Alu 1 311 -2 1872 196 35 84 chr6 8928602 8928893 -173486349 - L1ME1 LINE L1 -544 5622 5318 509 208 0 0 chr6 8928945 8929065 -173486177 - L1MA9 LINE L1 -33 6279 6160 * 1025 202 42 21 chr6 8929058 8929266 -173485976 - L1ME1 LINE L1 -844 5302 5083 507 113 0 0 chr6 8929266 8929346 -173485896 + MADE1 DNA Mariner 1 80 0 1025 202 42 21 chr6 8929346 8929469 -173485773 - L1ME1 LINE L1 -1063 5083 4964 370 245 29 22 chr6 8929465 8929604 -173485638 - L1M1 LINE L1 -4640 2925 2786 * 32 81 0 0 chr6 8930132 8930206 -173485036 + AT_rich Low_complexity Low_complexity 1 74 0 30 59 0 0 chr6 8930367 8930418 -173484824 + AT_rich Low_complexity Low_complexity 1 51 0 216 158 0 0 chr6 8931384 8931422 -173483820 + (TATG)n Simple_repeat Simple_repeat 1 38 0 186 43 0 0 chr6 8931422 8931445 -173483797 + (CA)n Simple_repeat Simple_repeat 1 23 0 2169 123 3 0 chr6 8932030 8932331 -173482911 - AluSx SINE Alu -6 306 5 200 407 0 0 chr6 8933204 8933285 -173481957 + MIR SINE MIR 16 96 -112 265 296 209 26 chr6 8933440 8933555 -173481687 + L2 LINE L2 3137 3272 0 26 0 0 0 chr6 8934048 8934074 -173481168 + AT_rich Low_complexity Low_complexity 1 26 0 409 302 259 31 chr6 8934956 8935307 -173479935 + L3 LINE CR1 1132 1562 -15 439 77 0 0 chr6 8935664 8935729 -173479513 - L1PA16 LINE L1 -4 7600 7536 11877 207 25 22 chr6 8935730 8938003 -173477239 - L1PA16 LINE L1 -105 7499 5234 2003 136 0 3 chr6 8938003 8938297 -173476945 - AluSx SINE Alu -17 295 3 11877 207 25 22 chr6 8938297 8939110 -173476132 - L1PA16 LINE L1 -2370 5234 4425 1887 159 0 0 chr6 8939110 8939418 -173475824 - AluSx SINE Alu -4 308 1 11877 207 25 22 chr6 8939418 8940620 -173474622 - L1PA16 LINE L1 -3179 4425 3197 2018 154 0 0 chr6 8940620 8940925 -173474317 - AluSx SINE Alu -7 305 1 11877 207 25 22 chr6 8940925 8941922 -173473320 - L1PA16 LINE L1 -4407 3197 2204 27 62 0 0 chr6 8942898 8942946 -173472296 + AT_rich Low_complexity Low_complexity 1 48 0 2094 152 82 14 chr6 8943000 8943363 -173471879 - L1MC2 LINE L1 -170 6174 5778 204 40 0 0 chr6 8943363 8943388 -173471854 + (GCATG)n Simple_repeat Simple_repeat 5 29 0 2094 152 82 14 chr6 8943388 8943438 -173471804 - L1MC2 LINE L1 -566 5778 5733 28 48 0 0 chr6 8943631 8943673 -173471569 + AT_rich Low_complexity Low_complexity 1 42 0 1562 206 21 45 chr6 8943826 8944200 -173471042 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr6 8944244 8944266 -173470976 + (A)n Simple_repeat Simple_repeat 1 22 0 1009 328 22 9 chr6 8944266 8944583 -173470659 - L3 LINE CR1 -25 1552 1232 499 263 8 8 chr6 8944703 8944821 -173470421 - L2 LINE L2 0 3272 3155 212 433 0 0 chr6 8944877 8945011 -173470231 - L2 LINE L2 -335 2978 2845 378 123 37 49 chr6 8945026 8945107 -173470135 + L1MA5A LINE L1 6218 6297 0 1950 232 88 17 chr6 8945113 8945635 -173469607 + MLT1F1 LTR MaLR 9 567 0 488 265 123 0 chr6 8945643 8945813 -173469429 - MLT1L LTR MaLR -1 614 424 1078 275 109 73 chr6 8945998 8946204 -173469038 - L2 LINE L2 -791 2523 2326 2065 98 11 21 chr6 8946204 8946491 -173468751 - AluSq SINE Alu -27 286 3 1078 275 109 73 chr6 8946491 8947189 -173468053 - L2 LINE L2 -988 2326 1586 658 272 94 22 chr6 8947303 8947527 -173467715 + MIR SINE MIR 2 241 -21 274 346 52 52 chr6 8950901 8951037 -173464205 - L2 LINE L2 -19 3253 3118 420 277 42 43 chr6 8951117 8951330 -173463912 - MIR SINE MIR -12 250 33 344 138 15 0 chr6 8951620 8951685 -173463557 + (CA)n Simple_repeat Simple_repeat 2 67 0 1642 135 97 4 chr6 8952039 8952331 -173462911 - AluSx SINE Alu 0 316 1 1193 279 59 20 chr6 8952377 8952868 -173462374 - L1ME3A LINE L1 -280 5890 5381 183 42 0 0 chr6 8952968 8952992 -173462250 + (TTG)n Simple_repeat Simple_repeat 2 25 0 985 185 6 0 chr6 8952994 8953156 -173462086 - AluJb SINE Alu -15 297 135 1997 127 14 46 chr6 8953168 8953515 -173461727 - THE1C LTR MaLR -39 336 1 805 156 0 0 chr6 8953535 8953657 -173461585 - AluJb SINE Alu -190 122 1 1319 289 90 48 chr6 8953660 8955088 -173460154 - L1ME3A LINE L1 -865 5281 3794 1177 195 71 68 chr6 8955077 8955201 -173460041 - L1M4 LINE L1 -895 5645 5523 * 1609 157 38 11 chr6 8955201 8955488 -173459754 - AluSx SINE Alu -17 295 1 1177 195 71 68 chr6 8955488 8955788 -173459454 - L1M4 LINE L1 -1017 5523 5220 1299 276 126 31 chr6 8955902 8956446 -173458796 - MER77 LTR ERV1 -4 601 54 559 233 105 9 chr6 8956552 8956780 -173458462 - L1MEc LINE L1 -2591 3949 3700 2486 243 50 95 chr6 8956787 8957022 -173458220 - L1MEc LINE L1 -2994 3546 3302 1784 151 3 20 chr6 8957022 8957314 -173457928 + AluJb SINE Alu 5 291 -21 2486 243 50 95 chr6 8957314 8958501 -173456741 - L1MEc LINE L1 -3238 3302 2063 1853 102 14 0 chr6 8958501 8958776 -173456466 - L1MA3 LINE L1 0 6305 6027 2486 243 50 95 chr6 8958776 8958833 -173456409 - L1MEc LINE L1 -4477 2063 2005 2017 131 0 0 chr6 8958833 8959131 -173456111 + AluSp SINE Alu 1 298 -15 2486 243 50 95 chr6 8959131 8960208 -173455034 - L1MEc LINE L1 -4535 2005 1137 25 31 0 0 chr6 8960226 8960258 -173454984 + AT_rich Low_complexity Low_complexity 1 32 0 1968 248 72 22 chr6 8960400 8960952 -173454290 - L1MEc LINE L1 -5934 606 27 1336 286 54 20 chr6 8960961 8961698 -173453544 - L1MEc LINE L1 -5571 825 34 549 313 62 62 chr6 8961698 8961796 -173453446 - L1MDa LINE L1 -4455 1674 1577 411 56 0 0 chr6 8961796 8961850 -173453392 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 549 313 62 62 chr6 8961850 8962221 -173453021 - L1MDa LINE L1 -4551 1578 1205 551 276 21 72 chr6 8962231 8962619 -173452623 - L1MDa LINE L1 -4908 1211 844 5681 207 47 33 chr6 8964565 8966976 -173448266 + L1MB7 LINE L1 3730 6168 -16 21 71 0 0 chr6 8967293 8967335 -173447907 + AT_rich Low_complexity Low_complexity 1 42 0 2224 102 0 37 chr6 8968396 8968720 -173446522 + AluSx SINE Alu 1 312 0 306 310 17 9 chr6 8968857 8968973 -173446269 + MIR SINE MIR 140 256 -6 4933 54 6 2 chr6 8968985 8969615 -173445627 - L1P LINE L1 -1715 4431 3799 886 60 8 45 chr6 8969567 8969700 -173445542 + L1PA4 LINE L1 6027 6154 -1 * 537 299 50 85 chr6 8969752 8969938 -173445304 - MLT1J LTR MaLR -52 459 291 2131 116 0 0 chr6 8969938 8970230 -173445012 + AluSx SINE Alu 6 297 -15 537 299 50 85 chr6 8970230 8970407 -173444835 - MLT1J LTR MaLR -220 291 109 23 54 0 0 chr6 8970572 8970609 -173444633 + AT_rich Low_complexity Low_complexity 1 37 0 325 350 88 26 chr6 8970669 8970975 -173444267 + L1M4 LINE L1 3584 3908 -2238 244 309 90 50 chr6 8971406 8971972 -173443270 + L1M4 LINE L1 4488 5076 -1070 322 288 73 14 chr6 8972068 8972208 -173443034 + MER20 DNA MER1_type 46 195 -24 643 219 71 129 chr6 8972986 8973248 -173441994 - MLT1L LTR MaLR -27 588 236 237 276 14 7 chr6 8973315 8973398 -173441844 + GA-rich Low_complexity Low_complexity 1 146 0 375 227 277 7 chr6 8973411 8973552 -173441690 - MER5A DNA MER1_type -2 187 9 471 244 70 70 chr6 8974470 8974642 -173440600 + MER91B DNA MER1_type 11 182 -8 514 133 14 147 chr6 8975029 8975172 -173440070 + LOR1-int LTR ERV1 6830 6953 -1167 207 0 0 0 chr6 8975185 8975208 -173440034 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6678 110 20 3 chr6 8975213 8976990 -173438252 - L1PA8 LINE L1 -15 6157 4349 1981 113 3 0 chr6 8977004 8977288 -173437954 + L1P LINE L1 4707 4991 -1155 5025 104 1 1 chr6 8977296 8978007 -173437235 - L1PA8 LINE L1 -1800 4346 3636 1967 147 20 11 chr6 8978007 8978355 -173436887 + MER72 LTR ERV1 344 694 -28 22 0 0 0 chr6 8978355 8978377 -173436865 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 8978386 8978407 -173436835 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 8979625 8979646 -173435596 + AT_rich Low_complexity Low_complexity 1 21 0 2081 123 3 19 chr6 8980278 8980586 -173434656 + AluSx SINE Alu 1 303 -9 1257 316 89 12 chr6 8980654 8981138 -173434104 + MLT1G1 LTR MaLR 75 595 0 935 220 16 0 chr6 8981758 8981944 -173433298 - MER5A DNA MER1_type 0 189 1 253 286 18 0 chr6 8982053 8982109 -173433133 - L2 LINE L2 -11 3261 3205 21 36 0 0 chr6 8983572 8983600 -173431642 + AT_rich Low_complexity Low_complexity 1 28 0 324 70 0 0 chr6 8983925 8983968 -173431274 + (TG)n Simple_repeat Simple_repeat 1 43 0 506 280 21 38 chr6 8985363 8985549 -173429693 + MIR SINE MIR 60 242 -20 2057 143 125 13 chr6 8986438 8986823 -173428419 + MSTA LTR MaLR 1 428 0 365 22 0 0 chr6 8986932 8986978 -173428264 - MADE1 DNA Mariner -1 79 34 22 0 0 0 chr6 8987576 8987598 -173427644 + AT_rich Low_complexity Low_complexity 1 22 0 652 216 242 5 chr6 8987609 8987803 -173427439 + MIR SINE MIR 2 241 -21 192 179 0 0 chr6 8988264 8988303 -173426939 + (CAA)n Simple_repeat Simple_repeat 1 39 0 783 298 129 51 chr6 8988831 8989382 -173425860 - L1ME4a LINE L1 -48 6073 5480 612 336 14 14 chr6 8989413 8989621 -173425621 + MIR SINE MIR 55 262 0 253 263 66 13 chr6 8989643 8989719 -173425523 - L1ME4a LINE L1 -659 5462 5383 2256 101 0 0 chr6 8989742 8990039 -173425203 - AluSg SINE Alu -13 297 1 395 310 91 5 chr6 8990091 8990278 -173424964 + LTR16A LTR ERVL 1 203 -247 1723 172 8 87 chr6 8990279 8990657 -173424585 - MER7A DNA MER2_type 0 346 1 383 253 120 90 chr6 8990657 8990889 -173424353 + LTR16A LTR ERVL 203 441 -9 252 226 12 24 chr6 8991052 8991136 -173424106 - L1MB8 LINE L1 -37 6141 6059 22 35 0 0 chr6 8991566 8991595 -173423647 + AT_rich Low_complexity Low_complexity 1 29 0 620 165 132 8 chr6 8991602 8991723 -173423519 + FRAM SINE Alu 23 158 -18 2123 125 0 7 chr6 8992016 8992321 -173422921 + AluSx SINE Alu 1 303 -9 255 215 13 25 chr6 8992326 8992405 -173422837 + L1MB8 LINE L1 6059 6136 -42 23 33 0 0 chr6 8992555 8992585 -173422657 + AT_rich Low_complexity Low_complexity 1 30 0 657 181 9 0 chr6 8993360 8993476 -173421766 + FLAM_C SINE Alu 1 117 -16 24 32 0 0 chr6 8993652 8993683 -173421559 + AT_rich Low_complexity Low_complexity 1 31 0 223 290 43 0 chr6 8995766 8995835 -173419407 - MIR SINE MIR -13 249 178 303 250 0 0 chr6 8995944 8996016 -173419226 + L1ME1 LINE L1 28 99 -6297 234 0 0 0 chr6 8996027 8996053 -173419189 + (A)n Simple_repeat Simple_repeat 1 26 0 4604 271 72 17 chr6 8996055 8998892 -173416350 + L1ME1 LINE L1 1308 4277 -1938 2373 226 104 43 chr6 8998897 9000120 -173415122 + L1ME1 LINE L1 4772 6099 -136 2166 86 0 7 chr6 9000120 9000428 -173414814 + AluSc SINE Alu 1 306 0 2373 226 104 43 chr6 9000428 9000569 -173414673 + L1ME1 LINE L1 6099 6230 -5 1184 110 0 0 chr6 9000716 9000889 -173414353 + L1PA8A LINE L1 3764 3936 -2210 307 107 0 0 chr6 9000886 9000942 -173414300 + L1 LINE L1 4794 4849 -1297 * 3122 103 9 0 chr6 9000948 9001403 -173413839 + L1PA8A LINE L1 4143 4601 -1545 5856 91 16 17 chr6 9001404 9002839 -173412403 + L1PA8A LINE L1 4690 6128 -3 34 0 0 0 chr6 9002839 9002873 -173412369 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 9003028 9003050 -173412192 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 9003187 9003208 -173412034 + (T)n Simple_repeat Simple_repeat 1 21 0 245 268 24 24 chr6 9003812 9003911 -173411331 - MER5A DNA MER1_type -87 102 4 798 269 197 14 chr6 9004005 9004437 -173410805 - MLT1J LTR MaLR 0 511 1 267 311 78 11 chr6 9004490 9004580 -173410662 + MIR3 SINE MIR 63 158 -50 22 0 0 0 chr6 9005663 9005685 -173409557 + AT_rich Low_complexity Low_complexity 1 22 0 961 238 135 82 chr6 9005824 9006552 -173408690 - LTR41 LTR ERVL -7 766 1 253 327 58 29 chr6 9006778 9006882 -173408360 - MIR3 SINE MIR -36 172 66 701 273 98 35 chr6 9006889 9007175 -173408067 - L2 LINE L2 -4 3309 3006 354 123 0 0 chr6 9010670 9010727 -173404515 + (TG)n Simple_repeat Simple_repeat 1 57 0 8778 129 21 9 chr6 9011175 9012546 -173402696 + Tigger1 DNA MER2_type 31 1417 -1001 2429 151 47 7 chr6 9012543 9012967 -173402275 + Tigger1 DNA MER2_type 1977 2417 -1 * 215 286 39 39 chr6 9013580 9013657 -173401585 + MIR SINE MIR 2 78 -184 342 315 142 6 chr6 9013801 9013963 -173401279 + MLT1J2 LTR MaLR 124 307 -143 450 317 116 9 chr6 9014425 9014649 -173400593 - MIR SINE MIR -7 255 8 748 305 141 14 chr6 9015401 9015874 -173399368 - L2 LINE L2 -4 3309 2768 257 325 60 0 chr6 9015888 9016005 -173399237 - MIR SINE MIR -65 197 74 550 314 50 0 chr6 9016158 9016317 -173398925 - MIR SINE MIR -73 189 23 1962 142 3 7 chr6 9016463 9016759 -173398483 - AluSx SINE Alu -15 297 3 446 264 82 43 chr6 9017179 9017346 -173397896 - L1MEd LINE L1 -4880 1239 1055 1812 159 0 26 chr6 9017346 9017654 -173397588 - AluJo SINE Alu -12 300 1 446 264 82 43 chr6 9017654 9017766 -173397476 - L1MEd LINE L1 -5064 1055 949 1048 223 26 108 chr6 9017782 9017990 -173397252 - L1ME2 LINE L1 -8 6156 5997 2553 43 3 0 chr6 9017990 9018291 -173396951 + AluY SINE Alu 1 302 -9 1048 223 26 108 chr6 9018291 9018500 -173396742 - L1ME2 LINE L1 -167 5997 5773 880 306 121 16 chr6 9019727 9020165 -173395077 + L1ME LINE L1 740 1223 -5200 645 234 100 65 chr6 9020190 9020737 -173394505 + L1ME LINE L1 1291 1833 -4887 1629 238 25 39 chr6 9020764 9021490 -173393752 + L1ME LINE L1 5750 6458 -503 207 69 0 0 chr6 9021490 9021519 -173393723 + (CA)n Simple_repeat Simple_repeat 2 30 0 1629 238 25 39 chr6 9021519 9021630 -173393612 + L1ME LINE L1 6458 6569 -392 22 70 0 0 chr6 9021723 9021766 -173393476 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 9021982 9022007 -173393235 + AT_rich Low_complexity Low_complexity 1 25 0 4334 195 20 27 chr6 9022132 9022987 -173392255 - MER21B LTR ERV1 -14 849 1 257 298 35 94 chr6 9025304 9025475 -173389767 + L2 LINE L2 2953 3113 -159 2085 112 0 0 chr6 9025521 9025808 -173389434 + AluSg SINE Alu 21 307 -3 36 40 0 0 chr6 9025887 9025937 -173389305 + AT_rich Low_complexity Low_complexity 1 50 0 2010 128 0 28 chr6 9026521 9026842 -173388400 - AluJb SINE Alu 0 312 1 24 0 0 0 chr6 9028279 9028303 -173386939 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr6 9029106 9029136 -173386106 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 219 0 0 chr6 9029461 9029502 -173385740 - L2 LINE L2 -1 3312 3272 269 381 60 16 chr6 9029654 9029903 -173385339 - L2 LINE L2 -243 3070 2811 585 293 55 30 chr6 9030099 9030427 -173384815 - L1ME4a LINE L1 -263 5858 5523 205 375 26 40 chr6 9032329 9032481 -173382761 + L2 LINE L2 2608 2757 -557 263 289 67 0 chr6 9033237 9033341 -173381901 - MIR SINE MIR -31 231 121 604 285 131 9 chr6 9034799 9035013 -173380229 - MIR SINE MIR -1 261 22 22 0 0 0 chr6 9036404 9036426 -173378816 + AT_rich Low_complexity Low_complexity 1 22 0 263 276 99 26 chr6 9036593 9036787 -173378455 - MIR SINE MIR -41 221 20 383 257 44 26 chr6 9037433 9037546 -173377696 + MIR SINE MIR 81 195 -67 500 308 114 17 chr6 9038649 9039087 -173376155 - LTR33 LTR ERVL -1 520 17 * 616 333 68 30 chr6 9039072 9039438 -173375804 - MLT1I LTR MaLR -28 381 2 2154 110 30 0 chr6 9039593 9039893 -173375349 - AluSx SINE Alu -3 309 1 676 308 164 28 chr6 9040698 9041094 -173374148 + LTR16C LTR ERVL 42 491 0 222 233 0 0 chr6 9041429 9041472 -173373770 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2056 132 49 37 chr6 9042011 9042421 -173372821 + L1MA4 LINE L1 5886 6300 0 496 320 128 5 chr6 9043070 9043273 -173371969 - MLT1J1 LTR MaLR -4 442 215 1025 342 76 35 chr6 9043278 9043884 -173371358 + L2 LINE L2 2141 2771 -543 459 229 65 65 chr6 9043871 9044072 -173371170 + L2 LINE L2 3113 3313 0 * 243 0 0 0 chr6 9044828 9044855 -173370387 + (TG)n Simple_repeat Simple_repeat 1 27 0 408 238 144 50 chr6 9044858 9045018 -173370224 + MER91B DNA MER1_type 6 180 -10 180 111 0 0 chr6 9045976 9046003 -173369239 + (T)n Simple_repeat Simple_repeat 1 27 0 7900 11 1 0 chr6 9046023 9047632 -173367610 - L1PA2 LINE L1 0 6155 4546 427 276 82 102 chr6 9047733 9047858 -173367384 - L2 LINE L2 -34 3238 3112 2357 97 0 0 chr6 9047858 9048157 -173367085 - AluSx SINE Alu -13 299 1 427 276 82 102 chr6 9048157 9048335 -173366907 - L2 LINE L2 -160 3112 2941 32 0 0 0 chr6 9048354 9048386 -173366856 + AT_rich Low_complexity Low_complexity 1 32 0 2901 126 0 0 chr6 9048386 9048815 -173366427 - L1PA15 LINE L1 -10 6155 5727 2208 120 0 0 chr6 9048815 9049116 -173366126 - AluSc SINE Alu -8 301 1 211 346 95 35 chr6 9049212 9049527 -173365715 - L2 LINE L2 -452 2862 2529 374 325 90 5 chr6 9051769 9051957 -173363285 + MIR SINE MIR 21 224 -38 23 0 0 0 chr6 9051963 9051986 -173363256 + AT_rich Low_complexity Low_complexity 1 23 0 324 194 153 51 chr6 9052968 9053066 -173362176 - MIR3 SINE MIR -18 190 83 1721 74 12 19 chr6 9053585 9053841 -173361401 - MER11A LTR ERVK 0 1266 1013 687 151 7 20 chr6 9054324 9054476 -173360766 + CT-rich Low_complexity Low_complexity 2 151 0 1769 144 102 18 chr6 9054929 9055263 -173359979 - MLT1A1 LTR MaLR 0 365 4 1578 209 0 17 chr6 9055281 9055583 -173359659 - AluJo SINE Alu -15 297 1 391 148 23 0 chr6 9055876 9055964 -173359278 + CT-rich Low_complexity Low_complexity 3 92 0 231 173 0 0 chr6 9056490 9056542 -173358700 + C-rich Low_complexity Low_complexity 4 55 0 233 352 19 19 chr6 9056666 9056771 -173358471 - MIR3 SINE MIR -11 197 93 255 281 0 0 chr6 9056987 9057051 -173358191 + (CATA)n Simple_repeat Simple_repeat 4 67 0 180 77 0 0 chr6 9057293 9057319 -173357923 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 65 0 0 chr6 9057363 9057394 -173357848 + (TG)n Simple_repeat Simple_repeat 2 32 0 2288 102 3 0 chr6 9058381 9058676 -173356566 - AluSp SINE Alu -17 296 1 21 0 0 0 chr6 9058896 9058917 -173356325 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr6 9059399 9059432 -173355810 + (TG)n Simple_repeat Simple_repeat 1 33 0 593 236 156 31 chr6 9059808 9060033 -173355209 + MER112 DNA MER1_type 1 253 -7 1859 148 17 10 chr6 9060519 9060817 -173354425 - AluSx SINE Alu -12 300 1 22 70 0 0 chr6 9062004 9062047 -173353195 + AT_rich Low_complexity Low_complexity 1 43 0 1418 179 54 24 chr6 9062336 9062633 -173352609 - AluJo SINE Alu -6 306 1 494 269 40 120 chr6 9063352 9063701 -173351541 - MLT1K LTR MaLR -2 586 266 459 0 0 0 chr6 9063710 9063761 -173351481 + (TG)n Simple_repeat Simple_repeat 1 51 0 6726 60 19 2 chr6 9063763 9065469 -173349773 - L1PA7 LINE L1 -3 6151 4423 15419 105 8 3 chr6 9065470 9067745 -173347497 + L1P LINE L1 1490 3775 -2371 22 0 0 0 chr6 9068545 9068567 -173346675 + AT_rich Low_complexity Low_complexity 1 22 0 501 308 27 7 chr6 9068715 9068861 -173346381 + MIR3 SINE MIR 56 204 -4 393 58 0 0 chr6 9069895 9069947 -173345295 + (CA)n Simple_repeat Simple_repeat 2 53 0 296 130 14 0 chr6 9070332 9070401 -173344841 + (TA)n Simple_repeat Simple_repeat 2 71 0 220 77 96 0 chr6 9070464 9070516 -173344726 + (TA)n Simple_repeat Simple_repeat 2 58 0 208 128 64 43 chr6 9071566 9071613 -173343629 + MIR3 SINE MIR 144 191 -17 6218 138 15 17 chr6 9071862 9073941 -173341301 + L1MA4 LINE L1 4220 6295 -5 1552 126 31 126 chr6 9074205 9074530 -173340712 + AluJb SINE Alu 2 295 -7 619 280 108 91 chr6 9074900 9075740 -173339502 - L1M4c LINE L1 -2967 3179 2325 23 33 0 0 chr6 9076079 9076109 -173339133 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr6 9076257 9076281 -173338961 + AT_rich Low_complexity Low_complexity 1 24 0 14224 185 24 33 chr6 9076315 9076766 -173338476 - L1PB2 LINE L1 0 6867 6413 270 56 0 0 chr6 9076766 9076802 -173338440 + (CA)n Simple_repeat Simple_repeat 2 37 0 14224 185 24 33 chr6 9076802 9081526 -173333716 - L1PB2 LINE L1 -454 6413 1793 729 235 0 29 chr6 9081522 9081726 -173333516 + L1PBa LINE L1 1408 1605 -5258 * 3540 227 58 13 chr6 9081713 9082692 -173332550 - L1PB2 LINE L1 -5835 1028 6 231 114 0 0 chr6 9082774 9082809 -173332433 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1430 182 60 33 chr6 9082845 9083170 -173332072 - AluJo SINE Alu 0 333 1 868 126 29 6 chr6 9083258 9083432 -173331810 + CT-rich Low_complexity Low_complexity 1 178 0 313 115 16 16 chr6 9083448 9083509 -173331733 + (TTTTC)n Simple_repeat Simple_repeat 4 64 0 263 31 0 0 chr6 9083510 9083542 -173331700 + (TC)n Simple_repeat Simple_repeat 2 33 0 362 213 0 0 chr6 9083579 9083640 -173331602 - FLAM_A SINE Alu -45 88 28 357 286 86 16 chr6 9083725 9084059 -173331183 - L1M4c LINE L1 -776 1597 428 207 88 0 0 chr6 9085022 9085056 -173330186 + (TG)n Simple_repeat Simple_repeat 2 35 0 207 0 0 0 chr6 9085068 9085091 -173330151 + (CA)n Simple_repeat Simple_repeat 2 24 0 522 119 40 23 chr6 9085109 9085286 -173329956 + (TA)n Simple_repeat Simple_repeat 1 180 0 515 210 43 0 chr6 9086353 9086491 -173328751 - L1MB1 LINE L1 -818 5328 5185 * 4506 161 19 20 chr6 9086489 9087336 -173327906 + L1MB1 LINE L1 5322 6167 -1 25 0 0 0 chr6 9087336 9087361 -173327881 + AT_rich Low_complexity Low_complexity 1 25 0 3668 75 20 2 chr6 9087604 9088107 -173327135 - L1PB1 LINE L1 -1 6150 5639 3878 166 13 11 chr6 9089364 9090076 -173325166 - L1MC1 LINE L1 -5 6328 5616 28 0 0 0 chr6 9090525 9090553 -173324689 + AT_rich Low_complexity Low_complexity 1 28 0 194 233 23 0 chr6 9091762 9091805 -173323437 + L3 LINE CR1 1451 1494 -83 608 307 18 21 chr6 9092419 9092533 -173322709 - MER115 DNA AcHobo 0 693 580 1831 161 24 18 chr6 9092533 9092874 -173322368 - MER2 DNA MER2_type 0 344 2 608 307 18 21 chr6 9092874 9093039 -173322203 - MER115 DNA AcHobo -113 580 415 293 250 0 65 chr6 9093184 9093276 -173321966 + MLT1D LTR MaLR 3 88 -417 3125 148 18 4 chr6 9093418 9093926 -173321316 + MER1A DNA MER1_type 15 529 0 582 172 16 23 chr6 9093926 9094054 -173321188 + MLT1D LTR MaLR 260 386 -119 23877 90 8 6 chr6 9094054 9098455 -173316787 - L1PA7 LINE L1 -2 6467 2061 8574 104 35 0 chr6 9098463 9099720 -173315522 - L1PA7 LINE L1 -5160 1301 1 446 195 144 8 chr6 9099723 9099841 -173315401 + MLT1D LTR MaLR 371 504 -1 395 321 49 5 chr6 9100287 9100511 -173314731 + HsTC2 DNA Tc2 639 872 -1026 21 0 0 0 chr6 9100708 9100729 -173314513 + AT_rich Low_complexity Low_complexity 1 21 0 241 200 22 0 chr6 9101169 9101214 -173314028 - L3b LINE CR1 -116 1467 1422 189 218 168 30 chr6 9101565 9101666 -173313576 + MIR SINE MIR 89 203 -59 22 0 0 0 chr6 9101739 9101761 -173313481 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr6 9102528 9102557 -173312685 + (GA)n Simple_repeat Simple_repeat 2 30 0 2221 106 0 0 chr6 9102557 9102841 -173312401 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 9103793 9103814 -173311428 + AT_rich Low_complexity Low_complexity 1 21 0 1420 34 11 6 chr6 9105417 9105595 -173309647 - L1PA4 LINE L1 -2 6153 5975 336 0 0 0 chr6 9105595 9105639 -173309603 + L1PA4 LINE L1 5937 5980 -175 522 329 61 4 chr6 9106157 9106388 -173308854 - MIR SINE MIR -8 254 11 564 146 10 0 chr6 9107699 9107795 -173307447 + MLT1A2 LTR MaLR 278 374 0 992 102 28 11 chr6 9107845 9107892 -173307350 + CT-rich Low_complexity Low_complexity 1 227 0 992 102 28 11 chr6 9107892 9108069 -173307173 + CT-rich Low_complexity Low_complexity 1 180 0 507 330 89 0 chr6 9108743 9108979 -173306263 - L2 LINE L2 -958 2356 2100 2295 107 7 0 chr6 9109863 9110172 -173305070 - AluSq SINE Alu -2 311 1 840 262 173 22 chr6 9111322 9111621 -173303621 + MLT1G LTR MaLR 23 276 -314 1917 134 17 76 chr6 9111621 9111978 -173303264 - MER1B DNA MER1_type 0 337 2 840 262 173 22 chr6 9111978 9112170 -173303072 + MLT1G LTR MaLR 276 588 -2 1955 154 20 0 chr6 9113927 9114233 -173301009 - AluSx SINE Alu 0 312 1 1716 181 47 9 chr6 9114453 9114796 -173300446 - MLT1A1 LTR MaLR 0 365 10 2071 140 24 34 chr6 9114817 9115196 -173300046 + THE1C LTR MaLR 1 375 0 272 183 176 65 chr6 9115475 9115617 -173299625 - MER5A DNA MER1_type -6 183 4 247 258 70 39 chr6 9115640 9115768 -173299474 - MIR SINE MIR -59 149 18 279 275 58 0 chr6 9115962 9116082 -173299160 - MER69 DNA AcHobo -7 2519 2393 356 198 25 0 chr6 9116204 9116285 -173298957 - MER69 DNA AcHobo -2443 83 1 878 184 32 16 chr6 9117905 9118090 -173297152 - MER3 DNA MER1_type 0 209 22 463 302 130 28 chr6 9120204 9120565 -173294677 + MLT1I LTR MaLR 3 400 -9 431 264 47 73 chr6 9121310 9121525 -173293717 + MIR SINE MIR 56 262 0 180 219 158 12 chr6 9122156 9122238 -173293004 - MIR SINE MIR -72 190 97 240 344 22 0 chr6 9122266 9122356 -173292886 - L2 LINE L2 0 3313 3222 984 273 79 69 chr6 9122629 9123433 -173291809 + L2 LINE L2 2499 3313 0 2487 186 215 21 chr6 9123756 9124477 -173290765 + pTR5 LTR ERV1 1352 2212 -226 265 305 50 14 chr6 9124660 9124801 -173290441 - MLT1K LTR MaLR -108 480 335 23 0 0 0 chr6 9125127 9125150 -173290092 + AT_rich Low_complexity Low_complexity 1 23 0 1561 207 46 0 chr6 9125264 9125549 -173289693 - AluJo SINE Alu -14 298 1 1922 94 128 0 chr6 9125656 9125922 -173289320 - AluSq SINE Alu -13 300 1 29 0 0 0 chr6 9126801 9126830 -173288412 + AT_rich Low_complexity Low_complexity 1 29 0 1505 54 0 0 chr6 9126833 9127018 -173288224 - L1PA4 LINE L1 -8 6147 5963 1150 225 134 3 chr6 9127298 9127596 -173287646 - MER58B DNA MER1_type -4 337 1 1838 182 12 45 chr6 9128671 9129072 -173286170 - MLT1B LTR MaLR 0 390 3 2284 96 0 0 chr6 9129269 9129561 -173285681 + AluSg SINE Alu 1 292 -18 200 328 30 0 chr6 9130772 9130839 -173284403 - L2 LINE L2 -6 3266 3198 379 276 110 24 chr6 9131140 9131267 -173283975 - L2 LINE L2 -10 3262 3125 1467 189 67 28 chr6 9131556 9131916 -173283326 + MLT1A2 LTR MaLR 1 374 0 1294 268 38 38 chr6 9131940 9132500 -173282742 - MLT2F LTR ERVL -103 560 1 204 163 0 23 chr6 9133252 9133295 -173281947 + A-rich Low_complexity Low_complexity 2 43 0 276 30 0 0 chr6 9133672 9133705 -173281537 + (A)n Simple_repeat Simple_repeat 1 33 0 377 361 95 23 chr6 9134610 9134956 -173280286 + L2 LINE L2 2273 2643 -671 2587 168 40 7 chr6 9135482 9136029 -173279213 - L1MA8 LINE L1 -2 6289 5725 1351 164 79 54 chr6 9138740 9139094 -173276148 + MLT1A1 LTR MaLR 3 365 0 310 291 26 80 chr6 9139585 9139736 -173275506 - MIR SINE MIR -74 188 46 207 0 0 0 chr6 9142722 9142745 -173272497 + (T)n Simple_repeat Simple_repeat 1 23 0 247 362 0 0 chr6 9143262 9143331 -173271911 - L2 LINE L2 -4 3268 3200 830 209 4 43 chr6 9144992 9145222 -173270020 + pTR5 LTR ERV1 743 963 -1475 * 1255 135 30 11 chr6 9145195 9145462 -173269780 - pTR5 LTR ERV1 -1093 1345 1074 * 4474 119 122 120 chr6 9145447 9147071 -173268171 + pTR5 LTR ERV1 936 2438 0 180 292 21 0 chr6 9148293 9148341 -173266901 - MIR SINE MIR -10 252 204 198 118 0 0 chr6 9149335 9149369 -173265873 + (TG)n Simple_repeat Simple_repeat 1 34 0 437 128 0 0 chr6 9151149 9151227 -173264015 - L1MA9 LINE L1 -2 6310 6233 1943 138 32 37 chr6 9151338 9151715 -173263527 - THE1C LTR MaLR 0 375 1 2326 101 7 7 chr6 9152087 9152395 -173262847 + AluSg SINE Alu 1 308 -2 308 321 12 0 chr6 9152523 9152604 -173262638 + L2 LINE L2 3154 3235 -37 699 193 17 45 chr6 9153082 9153277 -173261965 + MLT1A2 LTR MaLR 6 205 -214 23 0 0 0 chr6 9153306 9153329 -173261913 + AT_rich Low_complexity Low_complexity 1 23 0 622 236 21 0 chr6 9153371 9153511 -173261731 + MLT1A2 LTR MaLR 190 332 -58 814 311 49 44 chr6 9153947 9154378 -173260864 + MER115 DNA AcHobo 2 434 -259 2621 51 0 0 chr6 9154385 9154696 -173260546 + AluY SINE Alu 1 311 0 220 330 80 0 chr6 9154796 9154884 -173260358 + MIR SINE MIR 46 140 -122 24 0 0 0 chr6 9155782 9155806 -173259436 + AT_rich Low_complexity Low_complexity 1 24 0 1290 200 3 7 chr6 9156086 9156306 -173258936 - L1MB3 LINE L1 -2 6181 5961 1990 117 27 20 chr6 9156306 9156477 -173258765 - AluSx SINE Alu -11 301 126 269 26 26 0 chr6 9156477 9156515 -173258727 + (TG)n Simple_repeat Simple_repeat 2 40 0 1990 117 27 20 chr6 9156515 9156642 -173258600 - AluSx SINE Alu -186 126 1 1290 200 3 7 chr6 9156642 9156711 -173258531 - L1MB3 LINE L1 -222 5961 5893 677 180 0 7 chr6 9156715 9156854 -173258388 - L1MB3 LINE L1 -719 5461 5324 826 250 94 3 chr6 9156854 9157238 -173258004 + MER114 LTR ERV 178 596 -52 1870 90 105 18 chr6 9157759 9158036 -173257206 + AluSq SINE Alu 1 301 -12 2019 124 0 0 chr6 9158400 9158682 -173256560 + AluSx SINE Alu 15 296 -16 195 42 0 0 chr6 9159194 9159218 -173256024 + (CA)n Simple_repeat Simple_repeat 2 25 0 622 368 68 29 chr6 9159714 9160095 -173255147 - L2 LINE L2 -5 3267 2872 995 364 37 23 chr6 9160162 9160939 -173254303 - L2 LINE L2 -514 2800 2013 186 411 18 0 chr6 9161215 9161271 -173253971 - L2 LINE L2 -87 3185 3129 360 0 0 0 chr6 9161601 9161641 -173253601 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 415 286 97 35 chr6 9161641 9161868 -173253374 - L2 LINE L2 -20 3293 3053 461 250 170 9 chr6 9161938 9162162 -173253080 + LTR16C LTR ERVL 232 491 0 1299 257 31 53 chr6 9162520 9163006 -173252236 - LTR53 LTR ERVL -9 510 36 2246 127 0 0 chr6 9165054 9165362 -173249880 + AluSg SINE Alu 1 308 -2 24 32 0 0 chr6 9166056 9166087 -173249155 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 9166109 9166139 -173249103 + AT_rich Low_complexity Low_complexity 1 30 0 4505 222 58 40 chr6 9168059 9170799 -173244443 - L1MD1 LINE L1 0 6242 3451 1416 143 4 40 chr6 9170858 9171104 -173244138 - MER1B DNA MER1_type -2374 338 148 1883 127 101 20 chr6 9171104 9171451 -173243791 + THE1C LTR MaLR 1 375 0 1416 143 4 40 chr6 9171451 9171491 -173243751 - MER1B DNA MER1_type -2564 148 108 9075 114 54 11 chr6 9171491 9172967 -173242275 + THE1C-int LTR MaLR 42 1580 0 446 111 12 49 chr6 9172967 9173048 -173242194 + THE1C LTR MaLR 1 78 -297 22 35 0 0 chr6 9175342 9175371 -173239871 + AT_rich Low_complexity Low_complexity 1 29 0 553 264 171 39 chr6 9175819 9175901 -173239341 - L2 LINE L2 -1267 2047 1977 1778 208 8 24 chr6 9175901 9176272 -173238970 - MLT1A1 LTR MaLR 0 365 1 553 264 171 39 chr6 9176272 9176447 -173238795 - L2 LINE L2 -1337 1977 1756 2447 93 0 0 chr6 9176450 9176751 -173238491 + AluSg SINE Alu 1 301 -9 730 196 69 0 chr6 9176758 9176931 -173238311 + L1MB1 LINE L1 4748 4932 -1214 2629 45 0 3 chr6 9176971 9177281 -173237961 - AluY SINE Alu -2 309 1 2199 225 34 17 chr6 9177311 9177955 -173237287 - L1MB1 LINE L1 -783 5363 4709 * 3882 150 53 8 chr6 9177953 9178719 -173236523 + L1MB1 LINE L1 5355 6155 -13 213 39 0 0 chr6 9178722 9178748 -173236494 + (TAA)n Simple_repeat Simple_repeat 2 27 0 722 263 202 20 chr6 9178750 9179047 -173236195 - L2 LINE L2 -1625 1689 1339 392 285 73 0 chr6 9179105 9179228 -173236014 - MER58B DNA MER1_type 0 341 210 260 314 0 0 chr6 9179415 9179485 -173235757 - MER63 DNA MER1_type -7 1055 986 260 229 43 0 chr6 9179507 9179577 -173235665 - MER63 DNA MER1_type -123 713 15 479 250 86 0 chr6 9180054 9180182 -173235060 + MIR SINE MIR 86 224 -38 930 328 65 21 chr6 9180210 9180872 -173234370 + L2 LINE L2 2629 3313 0 2316 109 0 3 chr6 9181145 9181458 -173233784 - AluSx SINE Alu 0 312 1 206 250 0 17 chr6 9181981 9182041 -173233201 + T-rich Low_complexity Low_complexity 4 62 0 26 0 0 0 chr6 9182426 9182452 -173232790 + AT_rich Low_complexity Low_complexity 1 26 0 596 222 0 0 chr6 9183398 9183506 -173231736 + Tigger3(Golem) DNA MER2_type 1 108 -2921 198 0 0 0 chr6 9183506 9183528 -173231714 + (T)n Simple_repeat Simple_repeat 1 22 0 1960 83 8 0 chr6 9183582 9183848 -173231394 - L1PA8 LINE L1 0 6172 5905 3923 140 28 29 chr6 9183853 9184603 -173230639 + Tigger3(Golem) DNA MER2_type 2281 3029 0 371 266 0 62 chr6 9184605 9184733 -173230509 + L2 LINE L2 3180 3299 -14 293 287 59 30 chr6 9184837 9184938 -173230304 - L2 LINE L2 0 3313 3210 413 222 127 16 chr6 9184984 9185110 -173230132 + MER5A DNA MER1_type 43 182 -7 270 0 0 0 chr6 9185700 9185730 -173229512 + (CA)n Simple_repeat Simple_repeat 2 31 0 516 157 62 105 chr6 9186380 9186590 -173228652 - L1MA9 LINE L1 -1 6311 6111 342 237 49 105 chr6 9186602 9186775 -173228467 - MIR SINE MIR -62 146 32 312 273 20 40 chr6 9188490 9188589 -173226653 + MIR SINE MIR 82 178 -84 2137 90 0 0 chr6 9189131 9189398 -173225844 + AluSx SINE Alu 1 267 -45 212 158 0 0 chr6 9189583 9189621 -173225621 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 429 267 136 11 chr6 9189644 9189820 -173225422 + MIR SINE MIR 46 243 -19 282 245 59 29 chr6 9189863 9189965 -173225277 - MIR3 SINE MIR -3 205 101 1465 189 172 56 chr6 9189982 9190021 -173225221 - MLT2B1 LTR ERVL 0 520 487 279 114 0 0 chr6 9190021 9190065 -173225177 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1465 189 172 56 chr6 9190065 9190491 -173224751 - MLT2B1 LTR ERVL -33 487 1 1889 155 0 0 chr6 9190676 9190994 -173224248 - AluJb SINE Alu 0 318 1 40 49 0 0 chr6 9192265 9192326 -173222916 + AT_rich Low_complexity Low_complexity 1 61 0 372 175 0 151 chr6 9193076 9193202 -173222040 + L2 LINE L2 3206 3312 -1 573 356 103 20 chr6 9193247 9193637 -173221605 + L3 LINE CR1 1056 1477 -100 246 326 93 29 chr6 9195244 9195416 -173219826 + MIR3 SINE MIR 8 190 -18 490 303 87 15 chr6 9196662 9196857 -173218385 + MIR SINE MIR 21 229 -33 264 59 0 0 chr6 9197451 9197485 -173217757 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2202 78 13 29 chr6 9197485 9197794 -173217448 - AluSg SINE Alu -6 304 1 207 286 195 0 chr6 9197825 9197902 -173217340 + MIR SINE MIR 56 147 -115 21 0 0 0 chr6 9198598 9198619 -173216623 + AT_rich Low_complexity Low_complexity 1 21 0 276 154 0 15 chr6 9198650 9198715 -173216527 - L1PB1 LINE L1 0 6151 6088 290 331 147 22 chr6 9199780 9199964 -173215278 + MIR SINE MIR 26 232 -30 880 210 23 0 chr6 9199983 9200159 -173215083 + MER5A DNA MER1_type 10 189 0 236 391 0 13 chr6 9200320 9200471 -173214771 - MIR SINE MIR -3 259 111 297 308 8 34 chr6 9200799 9200916 -173214326 + L2 LINE L2 3200 3313 0 442 294 75 37 chr6 9201120 9201307 -173213935 - MIR3 SINE MIR -1 207 14 727 266 29 14 chr6 9201439 9201646 -173213596 + MIR SINE MIR 53 262 0 713 206 0 0 chr6 9202313 9202439 -173212803 + FLAM_C SINE Alu 5 130 -3 223 234 16 23 chr6 9202447 9202575 -173212667 + (TA)n Simple_repeat Simple_repeat 1 127 0 240 35 0 0 chr6 9203797 9203826 -173211416 + (CA)n Simple_repeat Simple_repeat 2 30 0 1585 106 4 0 chr6 9205151 9205377 -173209865 - AluSg/x SINE Alu -3 309 83 206 321 0 0 chr6 9206848 9206904 -173208338 - L2 LINE L2 -12 3301 3246 714 264 26 45 chr6 9207382 9207761 -173207481 - L1M4 LINE L1 -2523 3623 3252 195 167 0 0 chr6 9207944 9207986 -173207256 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 272 223 60 18 chr6 9208002 9208168 -173207074 + (TA)n Simple_repeat Simple_repeat 1 173 0 1465 238 108 20 chr6 9210557 9211057 -173204185 + L1M4 LINE L1 3791 4334 -1812 300 200 12 50 chr6 9211123 9211188 -173204054 - MLT1F1 LTR MaLR -452 115 52 710 62 0 71 chr6 9211188 9211300 -173203942 - L1PA7 LINE L1 0 6154 6051 300 200 12 50 chr6 9211300 9211314 -173203928 - MLT1F1 LTR MaLR -515 52 39 1742 167 31 28 chr6 9212039 9212398 -173202844 + MLT1A1 LTR MaLR 6 365 0 550 195 18 44 chr6 9212404 9212517 -173202725 - FLAM_A SINE Alu -20 122 13 500 299 79 25 chr6 9212557 9212798 -173202444 - MIR SINE MIR -5 257 4 1454 169 71 42 chr6 9213475 9213812 -173201430 - MER7A DNA MER2_type -1 345 1 396 315 136 6 chr6 9214009 9214171 -173201071 - MIR SINE MIR -75 187 5 191 290 54 21 chr6 9214230 9214323 -173200919 + MIR SINE MIR 78 173 -89 192 267 67 44 chr6 9216471 9216561 -173198681 - L2 LINE L2 -14 3258 3167 1335 236 49 3 chr6 9216592 9216957 -173198285 + L1M4 LINE L1 3537 3918 -2228 * 6168 213 48 7 chr6 9216936 9219288 -173195954 + L1MB5 LINE L1 3715 6166 -8 473 260 78 0 chr6 9219370 9219524 -173195718 - Tigger6a DNA MER2_type -1 1082 917 9461 176 26 12 chr6 9219524 9222344 -173192898 + L1PA16 LINE L1 3305 6165 -1 3607 219 54 6 chr6 9222344 9223232 -173192010 - Tigger6a DNA MER2_type -138 945 15 903 186 194 75 chr6 9223603 9223929 -173191313 + MSTD LTR MaLR 10 396 0 192 266 147 28 chr6 9223937 9224046 -173191196 + MIR SINE MIR 64 185 -77 244 300 0 0 chr6 9224084 9224154 -173191088 - L2 LINE L2 -9 3263 3194 918 304 88 23 chr6 9324406 9325669 -173089573 - L1ME LINE L1 -4639 1622 113 2094 124 0 3 chr6 9325669 9325968 -173089274 + AluSx SINE Alu 1 298 -14 918 304 88 23 chr6 9325968 9325991 -173089251 - L1ME LINE L1 -6148 113 93 664 316 80 36 chr6 9326015 9326426 -173088816 - L1ME LINE L1 -5618 452 24 865 163 26 0 chr6 9327146 9327299 -173087943 - MER76 LTR ERV -531 157 1 3147 244 82 30 chr6 9327322 9327750 -173087492 - L1MCb LINE L1 -4425 2139 1735 1209 209 141 9 chr6 9327750 9328070 -173087172 - MLT1A1 LTR MaLR 0 365 4 3147 244 82 30 chr6 9328070 9329663 -173085579 - L1MCb LINE L1 -4829 1735 1 356 245 43 39 chr6 9329824 9330056 -173085186 - L1ME LINE L1 -5069 1565 1242 22 35 0 0 chr6 9330136 9330165 -173085077 + AT_rich Low_complexity Low_complexity 1 29 0 460 294 55 14 chr6 9331161 9331379 -173083863 - MER110A LTR ERV1 -23 445 219 202 273 23 23 chr6 9332867 9332995 -173082247 + (TA)n Simple_repeat Simple_repeat 2 129 0 340 296 49 118 chr6 9333026 9333313 -173081929 + L2 LINE L2 3045 3311 -2 552 257 13 41 chr6 9334019 9334272 -173080970 + L2 LINE L2 3005 3313 0 23 0 0 0 chr6 9334600 9334623 -173080619 + AT_rich Low_complexity Low_complexity 1 23 0 687 266 142 88 chr6 9334636 9335045 -173080197 - L2 LINE L2 -902 2412 1982 319 296 20 0 chr6 9335561 9335659 -173079583 - MIR SINE MIR -13 249 150 306 148 0 0 chr6 9336294 9336348 -173078894 + (TTA)n Simple_repeat Simple_repeat 2 55 0 1135 267 52 51 chr6 9336487 9336631 -173078611 - L1MCc LINE L1 -4509 2508 2366 1057 55 7 7 chr6 9336631 9336777 -173078465 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 1135 267 52 51 chr6 9336777 9337386 -173077856 - L1MCc LINE L1 -4651 2366 1605 2544 296 89 38 chr6 9337462 9338191 -173077051 - L1MCc LINE L1 -4851 1571 881 1355 228 18 97 chr6 9338191 9338748 -173076494 + LTR40a LTR ERVL 5 517 -2 2544 296 89 38 chr6 9338748 9339420 -173075822 - L1MCc LINE L1 -5541 881 96 905 137 95 6 chr6 9339425 9339593 -173075649 + MLT1A1 LTR MaLR 3 185 -180 934 228 10 5 chr6 9339791 9339988 -173075254 + MLT1A1 LTR MaLR 168 365 0 230 374 24 0 chr6 9340623 9340706 -173074536 + MIR3 SINE MIR 123 207 -1 288 368 17 0 chr6 9340735 9340852 -173074390 - MIR3 SINE MIR -8 200 82 283 362 27 27 chr6 9340919 9341104 -173074138 + MIR SINE MIR 7 191 -71 516 170 226 0 chr6 9342645 9342751 -173072491 - FLAM_C SINE Alu -3 130 1 1326 179 16 76 chr6 9343576 9344017 -173071225 - L1MB1 LINE L1 -5 6163 5697 2352 106 3 0 chr6 9344017 9344363 -173070879 - AluSq SINE Alu 0 347 1 1326 179 16 76 chr6 9344363 9345020 -173070222 - L1MB1 LINE L1 -471 5697 4981 28 48 0 0 chr6 9345379 9345421 -173069821 + AT_rich Low_complexity Low_complexity 1 42 0 243 299 45 0 chr6 9346230 9346297 -173068945 + L2 LINE L2 3226 3295 -18 1382 202 83 9 chr6 9346664 9347025 -173068217 + MLT2B1 LTR ERVL 1 397 0 1880 167 0 34 chr6 9347088 9347411 -173067831 - AluJb SINE Alu 0 312 1 23 33 0 0 chr6 9347483 9347513 -173067729 + AT_rich Low_complexity Low_complexity 1 30 0 1949 151 148 3 chr6 9347923 9348295 -173066947 - MSTA LTR MaLR -2 426 1 476 213 133 33 chr6 9348377 9348527 -173066715 + MIR SINE MIR 28 192 -70 447 221 67 67 chr6 9348683 9348832 -173066410 - L2 LINE L2 -6 3307 3159 2168 228 8 4 chr6 9348833 9349356 -173065886 + L1MA9 LINE L1 3764 4288 -1858 1208 218 14 59 chr6 9349397 9349823 -173065419 + L1MA9 LINE L1 5868 6274 -38 2397 102 0 6 chr6 9351178 9351493 -173063749 + AluSq SINE Alu 1 313 0 1020 221 14 5 chr6 9352225 9352442 -173062800 - MER20 DNA MER1_type 0 219 1 702 145 0 0 chr6 9353676 9353814 -173061428 + (CA)n Simple_repeat Simple_repeat 1 138 0 3324 163 56 22 chr6 9354201 9354668 -173060574 - L1PB4 LINE L1 -3 6153 5653 1706 143 0 0 chr6 9354668 9354919 -173060323 - AluSc SINE Alu -20 289 39 3324 163 56 22 chr6 9354919 9355145 -173060097 - L1PB4 LINE L1 -503 5653 5436 198 103 0 0 chr6 9355520 9355549 -173059693 + (GGAGAA)n Simple_repeat Simple_repeat 6 34 0 338 266 12 12 chr6 9355947 9356116 -173059126 + CT-rich Low_complexity Low_complexity 1 169 0 237 289 24 0 chr6 9356181 9356264 -173058978 - L2 LINE L2 -26 3287 3203 2322 63 0 13 chr6 9357458 9357761 -173057481 + AluY SINE Alu 1 299 -12 6079 120 28 19 chr6 9358538 9359983 -173055259 - L1PA13 LINE L1 -6 6157 4695 22 0 0 0 chr6 9359986 9360008 -173055234 + AT_rich Low_complexity Low_complexity 1 22 0 2411 136 64 5 chr6 9360315 9360719 -173054523 + MSTA LTR MaLR 1 428 0 25 31 0 0 chr6 9360908 9360940 -173054302 + AT_rich Low_complexity Low_complexity 1 32 0 192 158 0 0 chr6 9361644 9361682 -173053560 + A-rich Low_complexity Low_complexity 2 39 0 221 136 0 23 chr6 9362315 9362359 -173052883 + (TCTCCC)n Simple_repeat Simple_repeat 4 46 0 2014 138 125 33 chr6 9362724 9363116 -173052126 + MSTA LTR MaLR 1 428 0 338 207 134 0 chr6 9363904 9363986 -173051256 - MER94 DNA DNA -41 93 1 667 212 21 93 chr6 9364153 9364389 -173050853 - MER20 DNA MER1_type 0 219 1 285 368 0 0 chr6 9364556 9364662 -173050580 + MIR SINE MIR 52 157 -105 204 67 0 0 chr6 9365037 9365067 -173050175 + (T)n Simple_repeat Simple_repeat 1 30 0 230 191 32 48 chr6 9365082 9365145 -173050097 - L2 LINE L2 -61 3252 3191 3542 141 30 73 chr6 9365340 9366050 -173049192 + LTR58 LTR ERV1 1 679 0 2154 109 0 3 chr6 9366646 9366940 -173048302 - AluSx SINE Alu -19 293 1 2239 104 0 0 chr6 9367541 9367838 -173047404 - AluSq SINE Alu -16 297 1 2005 168 5 35 chr6 9367894 9368298 -173046944 - MER57A LTR ERV1 0 403 12 1864 103 4 27 chr6 9368552 9368814 -173046428 - AluSx SINE Alu -13 299 44 22 0 0 0 chr6 9368823 9368845 -173046397 + AT_rich Low_complexity Low_complexity 1 22 0 199 241 29 176 chr6 9368950 9369120 -173046122 + MIR SINE MIR 89 233 -29 583 79 0 0 chr6 9369190 9369279 -173045963 - L1P LINE L1 -796 5355 5267 5000 117 1 6 chr6 9369279 9369712 -173045530 + L1PB1 LINE L1 5362 5791 -360 351 0 0 0 chr6 9369712 9369751 -173045491 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5000 117 1 6 chr6 9369751 9370110 -173045132 + L1PB1 LINE L1 5791 6150 -1 573 40 0 0 chr6 9370189 9370264 -173044978 - MER41B LTR ERV1 -85 550 476 246 349 63 37 chr6 9370295 9370484 -173044758 + L2 LINE L2 2888 3081 -191 21 0 0 0 chr6 9370736 9370757 -173044485 + AT_rich Low_complexity Low_complexity 1 21 0 304 100 80 0 chr6 9370759 9370809 -173044433 - U2 snRNA snRNA -134 54 1 24 0 0 0 chr6 9371099 9371123 -173044119 + AT_rich Low_complexity Low_complexity 1 24 0 2382 76 6 19 chr6 9371132 9371447 -173043795 + AluY SINE Alu 1 311 0 855 78 0 0 chr6 9371447 9371563 -173043679 + (TA)n Simple_repeat Simple_repeat 2 117 0 1522 185 176 45 chr6 9371571 9372064 -173043178 + L1MC3 LINE L1 6688 7245 -540 1135 168 17 0 chr6 9372073 9372305 -173042937 + L1MC3 LINE L1 7539 7774 -11 853 0 0 0 chr6 9372979 9373075 -173042167 + AluYa5/8 SINE Alu 216 311 0 940 227 112 51 chr6 9373086 9373399 -173041843 + MLT1D LTR MaLR 23 354 -151 27 29 0 0 chr6 9373803 9373837 -173041405 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr6 9374331 9374357 -173040885 + AT_rich Low_complexity Low_complexity 1 26 0 275 221 15 0 chr6 9375273 9375341 -173039901 + CT-rich Low_complexity Low_complexity 2 70 0 186 43 0 0 chr6 9375354 9375377 -173039865 + (CA)n Simple_repeat Simple_repeat 2 24 0 2115 125 3 0 chr6 9375711 9376008 -173039234 + AluSx SINE Alu 1 298 -14 231 405 68 35 chr6 9376024 9376335 -173038907 - L2 LINE L2 -9 3263 2943 210 71 0 0 chr6 9376347 9376375 -173038867 + (A)n Simple_repeat Simple_repeat 1 28 0 194 347 61 38 chr6 9376563 9376906 -173038336 - L2 LINE L2 -632 2682 2332 22 0 0 0 chr6 9378665 9378687 -173036555 + AT_rich Low_complexity Low_complexity 1 22 0 983 219 159 4 chr6 9378687 9378920 -173036322 - AluSx SINE Alu -18 294 26 24 32 0 0 chr6 9378956 9378987 -173036255 + AT_rich Low_complexity Low_complexity 1 31 0 2480 58 0 0 chr6 9379604 9379895 -173035347 + AluY SINE Alu 1 291 -20 45 19 0 0 chr6 9382124 9382176 -173033066 + AT_rich Low_complexity Low_complexity 1 52 0 2202 113 0 0 chr6 9382177 9382469 -173032773 - AluSx SINE Alu -20 292 1 4477 116 91 127 chr6 9382474 9384054 -173031188 + pTR5 LTR ERV1 741 2438 0 271 280 96 16 chr6 9384125 9384250 -173030992 - MLT1G LTR MaLR -6 536 402 800 279 21 18 chr6 9384359 9384642 -173030600 - MLT1G LTR MaLR -297 293 10 193 373 111 30 chr6 9384720 9384991 -173030251 - L2 LINE L2 -8 3264 2972 324 0 0 0 chr6 9385019 9385055 -173030187 + (TG)n Simple_repeat Simple_repeat 2 37 0 241 353 150 38 chr6 9385184 9385583 -173029659 - L2 LINE L2 -556 2758 2315 596 222 205 10 chr6 9386185 9386473 -173028769 + L1MCa LINE L1 1253 1596 -4830 1291 284 39 11 chr6 9386594 9387228 -173028014 - L1MCc LINE L1 -4423 2699 1897 * 2228 245 127 19 chr6 9387210 9388614 -173026628 - L1MCb LINE L1 -4278 2467 765 231 325 52 45 chr6 9388734 9388806 -173026436 - MIR SINE MIR -91 171 101 2342 108 51 14 chr6 9388806 9389157 -173026085 + THE1B LTR MaLR 1 364 0 231 325 52 45 chr6 9389157 9389238 -173026004 - MIR SINE MIR -161 101 17 400 160 90 0 chr6 9389561 9389661 -173025581 - L1MA9 LINE L1 -2 6310 6202 622 136 41 41 chr6 9389663 9389810 -173025432 + L1MA9 LINE L1 6079 6225 -87 650 301 47 50 chr6 9389984 9390306 -173024936 - L1MCb LINE L1 -5480 565 245 1331 169 16 4 chr6 9390328 9390570 -173024672 + MLT2D LTR ERVL 1 245 -169 267 31 0 0 chr6 9390586 9390618 -173024624 + (CA)n Simple_repeat Simple_repeat 1 32 0 1415 278 56 7 chr6 9390645 9391236 -173024006 - L1MCc LINE L1 -4929 1494 875 2373 58 3 26 chr6 9391336 9391646 -173023596 - AluY SINE Alu -8 303 1 197 389 29 29 chr6 9392765 9392904 -173022338 + MIR3 SINE MIR 4 142 -66 2292 95 0 0 chr6 9392983 9393277 -173021965 + AluSg SINE Alu 1 294 -16 2090 130 0 10 chr6 9394689 9394990 -173020252 - AluSx SINE Alu -14 298 1 204 111 0 0 chr6 9395850 9395886 -173019356 + (T)n Simple_repeat Simple_repeat 1 36 0 630 214 98 42 chr6 9395895 9396234 -173019008 + MSTD LTR MaLR 1 395 -1 22 35 0 0 chr6 9396592 9396621 -173018621 + AT_rich Low_complexity Low_complexity 1 29 0 1521 201 40 3 chr6 9396720 9397019 -173018223 + AluJo SINE Alu 1 310 -2 217 320 117 0 chr6 9397076 9397179 -173018063 - L2 LINE L2 0 3313 3199 2164 95 3 43 chr6 9397934 9398260 -173016982 + AluSp SINE Alu 1 313 0 235 293 139 43 chr6 9398528 9398736 -173016506 + L2 LINE L2 669 896 -2418 189 0 0 0 chr6 9398736 9398757 -173016485 + (T)n Simple_repeat Simple_repeat 1 21 0 939 143 0 0 chr6 9398824 9398971 -173016271 - AluSg/x SINE Alu 0 312 166 6317 154 203 33 chr6 9398971 9400421 -173014821 + pTR5 LTR ERV1 743 2438 0 1269 251 116 30 chr6 9400753 9401244 -173013998 - MLT1F LTR MaLR -7 535 3 333 355 17 17 chr6 9401379 9401551 -173013691 + L2 LINE L2 1840 2011 -1303 1315 132 14 5 chr6 9401575 9401788 -173013454 - L1PB3 LINE L1 -2 6152 5938 2002 120 14 3 chr6 9401788 9402079 -173013163 - AluSp SINE Alu -19 294 1 507 177 0 0 chr6 9402525 9402604 -173012638 - AluSg/x SINE Alu -21 288 210 243 301 32 32 chr6 9404464 9404557 -173010685 - MLT1J LTR MaLR -193 318 226 396 351 71 54 chr6 9404813 9405052 -173010190 + L2 LINE L2 3017 3259 -13 371 287 0 0 chr6 9405416 9405503 -173009739 - MIR3 SINE MIR -30 178 92 1887 167 7 0 chr6 9405523 9405829 -173009413 + AluJb SINE Alu 1 308 -4 1697 155 0 126 chr6 9406207 9406488 -173008754 - MLT1B LTR MaLR 0 390 183 2138 99 0 7 chr6 9406488 9406800 -173008442 + AluSc SINE Alu 1 310 0 1697 155 0 126 chr6 9406800 9406963 -173008279 - MLT1B LTR MaLR -207 183 1 335 220 154 0 chr6 9407283 9407374 -173007868 + MIR SINE MIR 72 176 -86 2125 116 0 0 chr6 9407436 9407721 -173007521 - AluSc SINE Alu -24 285 1 1053 156 17 0 chr6 9409960 9410140 -173005102 + L1PA16 LINE L1 5975 6157 -9 208 195 167 34 chr6 9411357 9411455 -173003787 + MIR SINE MIR 75 181 -27 25 31 0 0 chr6 9411627 9411659 -173003583 + AT_rich Low_complexity Low_complexity 1 32 0 5590 93 2 6 chr6 9412282 9413076 -173002166 - L1PA13 LINE L1 -1 6162 5372 201 74 0 0 chr6 9413372 9413399 -173001843 + (GAGAA)n Simple_repeat Simple_repeat 4 30 0 336 356 52 7 chr6 9414232 9414541 -173000701 + L1MEc LINE L1 1488 1810 -4586 287 309 0 0 chr6 9414573 9414657 -173000585 - L1MEc LINE L1 -2424 3791 3708 505 319 35 45 chr6 9414728 9414988 -173000254 + MIR SINE MIR 6 251 -11 429 355 71 24 chr6 9415055 9415393 -172999849 - LTR16A LTR ERVL -5 445 92 206 327 0 0 chr6 9415458 9415513 -172999729 + C-rich Low_complexity Low_complexity 1 55 0 33 0 0 0 chr6 9415807 9415840 -172999402 + AT_rich Low_complexity Low_complexity 1 33 0 499 279 19 13 chr6 9417125 9417279 -172997963 - L2 LINE L2 0 3313 3159 3688 279 80 39 chr6 9418652 9420986 -172994256 - L1MEc LINE L1 -3933 2463 35 2198 50 8 0 chr6 9421325 9421585 -172993657 - AluY SINE Alu -12 299 38 610 288 65 78 chr6 9423526 9423665 -172991577 - L2 LINE L2 -18 3295 3156 390 42 0 0 chr6 9423665 9423713 -172991529 + (CATA)n Simple_repeat Simple_repeat 3 50 0 610 288 65 78 chr6 9423713 9424297 -172990945 - L2 LINE L2 -157 3156 2575 657 259 85 0 chr6 9424332 9424533 -172990709 - MER46C DNA MER2_type -118 220 3 2045 123 33 0 chr6 9424816 9425117 -172990125 - AluSq SINE Alu -2 311 1 1885 175 46 3 chr6 9426867 9427238 -172988004 - MLT1B LTR MaLR -3 387 1 447 87 0 0 chr6 9427350 9427419 -172987823 + (TG)n Simple_repeat Simple_repeat 2 70 0 359 234 29 91 chr6 9428313 9428488 -172986754 + MLT1K LTR MaLR 411 574 -14 24 0 0 0 chr6 9428505 9428529 -172986713 + AT_rich Low_complexity Low_complexity 1 24 0 1997 138 53 0 chr6 9429761 9430080 -172985162 + MER7A DNA MER2_type 1 334 -12 25 31 0 0 chr6 9431422 9431454 -172983788 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr6 9431590 9431632 -172983610 + AT_rich Low_complexity Low_complexity 1 42 0 2250 113 0 13 chr6 9432037 9432347 -172982895 - AluSg SINE Alu -3 307 2 202 136 0 23 chr6 9433002 9433046 -172982196 + (TTTTTA)n Simple_repeat Simple_repeat 2 44 0 24 0 0 0 chr6 9433220 9433244 -172981998 + AT_rich Low_complexity Low_complexity 1 24 0 744 140 19 76 chr6 9433404 9433445 -172981797 - L1MDa LINE L1 -4602 1938 1896 2725 26 3 0 chr6 9433445 9433755 -172981487 - AluY SINE Alu 0 311 1 744 140 19 76 chr6 9433755 9433870 -172981372 - L1MDa LINE L1 -4644 1896 1791 236 223 0 39 chr6 9433885 9433988 -172981254 + CT-rich Low_complexity Low_complexity 3 101 0 2292 189 50 45 chr6 9433992 9434678 -172980564 - L1MDa LINE L1 -4797 1743 1055 984 197 11 0 chr6 9434675 9434853 -172980389 - L1MDa LINE L1 -6351 189 10 * 542 267 124 10 chr6 9434848 9435155 -172980087 - L1M4 LINE L1 -3657 2489 2148 * 353 208 17 22 chr6 9435378 9435556 -172979686 + (TA)n Simple_repeat Simple_repeat 1 177 0 21 0 0 0 chr6 9435835 9435856 -172979386 + AT_rich Low_complexity Low_complexity 1 21 0 374 309 80 64 chr6 9435864 9436288 -172978954 - L1 LINE L1 -1800 4346 3916 327 230 30 96 chr6 9436293 9436428 -172978814 - LTR16A1 LTR ERVL -12 445 320 23 0 0 0 chr6 9437009 9437032 -172978210 + AT_rich Low_complexity Low_complexity 1 23 0 1741 112 9 0 chr6 9437112 9437344 -172977898 - AluSg SINE Alu -76 234 1 183 364 41 16 chr6 9438679 9438800 -172976442 + L2 LINE L2 3167 3290 -23 189 0 0 0 chr6 9440044 9440065 -172975177 + (TG)n Simple_repeat Simple_repeat 2 22 0 210 143 0 0 chr6 9440124 9440159 -172975083 + (TG)n Simple_repeat Simple_repeat 2 36 0 704 207 47 21 chr6 9441079 9441272 -172973970 - LTR48 LTR ERV1 0 787 590 3394 138 16 12 chr6 9441299 9441862 -172973380 - Tigger4(Zombi) DNA MER2_type 0 2731 2167 180 176 0 0 chr6 9441864 9441898 -172973344 + (CATA)n Simple_repeat Simple_repeat 2 35 0 301 173 0 0 chr6 9441898 9441950 -172973292 - L1MC4 LINE L1 -1339 6703 6652 1837 162 28 0 chr6 9441962 9442252 -172972990 - AluJb SINE Alu -10 302 5 329 256 81 0 chr6 9442287 9442373 -172972869 - Tigger4(Zombi) DNA MER2_type -2638 93 1 1915 202 84 16 chr6 9442389 9442840 -172972402 - LTR48 LTR ERV1 -305 482 1 292 289 74 44 chr6 9443282 9443417 -172971825 + MIR3 SINE MIR 42 180 -28 234 227 106 0 chr6 9443987 9444053 -172971189 + MIR SINE MIR 134 206 -56 269 279 11 0 chr6 9446645 9446751 -172968491 + CT-rich Low_complexity Low_complexity 1 185 0 343 274 105 20 chr6 9446817 9446970 -172968272 + MIR3 SINE MIR 41 206 -2 200 365 16 0 chr6 9447706 9447769 -172967473 + MIR SINE MIR 35 98 -110 2121 119 3 3 chr6 9449642 9449937 -172965305 + AluY SINE Alu 1 295 -16 194 174 22 0 chr6 9452988 9453034 -172962208 + (CATA)n Simple_repeat Simple_repeat 2 48 0 264 326 22 0 chr6 9453087 9453179 -172962063 - MIR SINE MIR -77 131 38 315 0 0 0 chr6 9453247 9453282 -172961960 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 167 0 0 chr6 9453282 9453330 -172961912 + (TA)n Simple_repeat Simple_repeat 1 48 0 28 29 0 0 chr6 9455038 9455073 -172960169 + AT_rich Low_complexity Low_complexity 1 35 0 257 347 41 24 chr6 9455748 9455918 -172959324 - MIR3 SINE MIR -8 200 28 357 306 65 9 chr6 9456685 9456793 -172958449 - MIR SINE MIR -116 146 33 264 231 0 0 chr6 9458058 9458110 -172957132 + L2 LINE L2 3261 3312 -1 21 0 0 0 chr6 9458565 9458586 -172956656 + AT_rich Low_complexity Low_complexity 1 21 0 1050 115 0 16 chr6 9458759 9458941 -172956301 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 701 172 14 0 chr6 9458944 9459089 -172956153 + CT-rich Low_complexity Low_complexity 3 149 0 330 260 65 22 chr6 9459947 9460178 -172955064 + L1M4 LINE L1 3039 3279 -2867 2246 138 74 10 chr6 9460259 9460665 -172954577 - MSTB1 LTR MaLR 0 432 1 1869 209 117 13 chr6 9460819 9461365 -172953877 - L1MC2 LINE L1 -6 7976 6239 368 308 0 0 chr6 9461368 9461475 -172953767 - MLT1F1 LTR MaLR -460 107 1 661 229 123 50 chr6 9461481 9461783 -172953459 - L1MD3 LINE L1 -727 7268 6945 488 260 64 101 chr6 9461810 9462387 -172952855 - L1MC4 LINE L1 -17 8025 7470 628 222 39 6 chr6 9462471 9462651 -172952591 - LTR16A1 LTR ERVL 0 457 272 256 262 0 106 chr6 9462720 9462861 -172952381 - LTR16A LTR ERVL -232 218 93 1434 285 118 16 chr6 9462956 9463662 -172951580 - L1MC4a LINE L1 -548 7260 6483 1258 256 149 47 chr6 9463864 9464633 -172950609 - L1MC4a LINE L1 -1578 6230 5383 364 281 113 45 chr6 9464684 9464976 -172950266 - L1MC4a LINE L1 -3171 2975 2664 384 298 62 13 chr6 9465315 9465588 -172949654 + L1M4 LINE L1 5258 5512 -662 931 281 129 14 chr6 9466173 9466738 -172948504 + L1ME3A LINE L1 2305 2934 -3212 2410 266 124 24 chr6 9466749 9468046 -172947196 + L1ME3A LINE L1 3353 4518 -1652 2262 108 7 7 chr6 9468046 9468353 -172946889 + AluSx SINE Alu 1 307 -5 2410 266 124 24 chr6 9468353 9469593 -172945649 + L1ME3A LINE L1 4518 6155 -15 261 74 37 19 chr6 9469862 9469916 -172945326 + (TG)n Simple_repeat Simple_repeat 2 56 0 4719 59 3 0 chr6 9472524 9473117 -172942125 - L1PA6 LINE L1 0 6154 5560 407 331 66 13 chr6 9475315 9475466 -172939776 - L3 LINE CR1 -111 1466 1308 348 334 49 0 chr6 9475921 9476044 -172939198 + MIR SINE MIR 34 162 -65 192 229 0 21 chr6 9476223 9476271 -172938971 - L2 LINE L2 -1 3312 3266 246 291 58 0 chr6 9476304 9476390 -172938852 - MIR SINE MIR -14 248 158 426 121 0 0 chr6 9478744 9478810 -172936432 + (TG)n Simple_repeat Simple_repeat 2 67 0 979 175 0 0 chr6 9478894 9479054 -172936188 - FRAM SINE Alu -5 161 2 252 314 9 38 chr6 9479606 9479711 -172935531 + MER5A DNA MER1_type 85 186 -3 1786 151 7 10 chr6 9480235 9480533 -172934709 + AluSq SINE Alu 1 297 -16 335 280 56 28 chr6 9480765 9480872 -172934370 - L2 LINE L2 -4 3309 3200 2454 222 53 19 chr6 9481209 9481834 -172933408 - MER82 DNA MER2_type -6 647 2 1495 169 21 71 chr6 9481955 9482292 -172932950 - L1MA9 LINE L1 -418 5894 5575 435 224 43 17 chr6 9482284 9482400 -172932842 + L1MA9 LINE L1 6101 6219 -93 * 287 219 24 0 chr6 9482446 9482528 -172932714 + L1MC4 LINE L1 6615 6698 -1344 2145 167 0 8 chr6 9484080 9484445 -172930797 + MLT1A1 LTR MaLR 4 365 0 2429 71 0 0 chr6 9484603 9484899 -172930343 - AluY SINE Alu -15 296 1 475 183 0 0 chr6 9486379 9486461 -172928781 + MLT1E1 LTR MaLR 2 83 -571 226 236 228 47 chr6 9486542 9486669 -172928573 + MLT1E1 LTR MaLR 240 389 -235 2378 143 26 3 chr6 9486685 9487064 -172928178 + MSTA LTR MaLR 41 428 0 872 244 71 0 chr6 9487064 9487289 -172927953 + MLT1E1 LTR MaLR 413 653 -1 242 293 7 82 chr6 9487857 9488004 -172927238 - L1ME LINE L1 -361 5760 5625 22 35 0 0 chr6 9488306 9488335 -172926907 + AT_rich Low_complexity Low_complexity 1 29 0 194 253 0 11 chr6 9488338 9488433 -172926809 + (TA)n Simple_repeat Simple_repeat 1 94 0 258 32 0 0 chr6 9488715 9488746 -172926496 + (TG)n Simple_repeat Simple_repeat 2 32 0 2152 109 0 3 chr6 9488802 9489095 -172926147 + AluSc SINE Alu 1 292 -17 321 280 30 10 chr6 9491123 9491223 -172924019 - MER5A DNA MER1_type -1 188 87 973 114 0 0 chr6 9493089 9493220 -172922022 + AluSg/x SINE Alu 146 276 -36 705 131 0 0 chr6 9493224 9493323 -172921919 - AluS SINE Alu -213 99 1 1557 155 72 72 chr6 9493473 9493534 -172921708 - THE1C LTR MaLR 0 375 315 2464 54 3 0 chr6 9493534 9493830 -172921412 - AluY SINE Alu -14 297 1 1557 155 72 72 chr6 9493830 9494143 -172921099 - THE1C LTR MaLR -59 316 1 327 85 0 0 chr6 9495016 9495063 -172920179 + (TG)n Simple_repeat Simple_repeat 2 48 0 1658 228 20 15 chr6 9495763 9496157 -172919085 + MSTD LTR MaLR 1 396 0 203 314 20 0 chr6 9497041 9497092 -172918150 + L2 LINE L2 3143 3194 -78 1194 202 7 18 chr6 9500232 9500518 -172914724 + L1PA16 LINE L1 5882 6163 -3 1098 195 75 99 chr6 9500542 9500958 -172914284 - MLT1D LTR MaLR -52 453 48 1163 237 130 75 chr6 9501020 9501349 -172913893 - L1MC4 LINE L1 -210 7832 7522 1853 162 52 16 chr6 9501349 9501732 -172913510 + MLT2C1 LTR ERVL 1 397 0 1163 237 130 75 chr6 9501732 9502171 -172913071 - L1MC4 LINE L1 -520 7522 7022 493 235 81 27 chr6 9502216 9502365 -172912877 - MER63 DNA MER1_type -276 786 4 972 220 11 51 chr6 9502370 9502391 -172912851 - L1MC4 LINE L1 -1015 7027 7007 2085 103 7 13 chr6 9502391 9502691 -172912551 - AluSg1 SINE Alu -11 298 1 972 220 11 51 chr6 9502691 9502942 -172912300 - L1MC4 LINE L1 -1035 7007 6766 323 134 110 37 chr6 9502958 9503040 -172912202 - L1ME LINE L1 -528 5642 5555 1164 284 33 79 chr6 9503048 9503868 -172911374 + L1MEc LINE L1 44 825 -5571 2678 79 26 5 chr6 9503869 9504260 -172910982 + MLT2A1 LTR ERVL 1 399 -45 380 208 0 5 chr6 9504261 9504634 -172910608 + (TA)n Simple_repeat Simple_repeat 1 371 0 326 194 32 0 chr6 9504647 9504899 -172910343 + (TAGA)n Simple_repeat Simple_repeat 1 260 0 297 230 0 0 chr6 9504900 9505078 -172910164 + (TA)n Simple_repeat Simple_repeat 1 178 0 300 113 38 0 chr6 9505098 9505151 -172910091 + MLT2A1 LTR ERVL 399 453 0 39578 76 13 14 chr6 9505152 9508188 -172907054 + HERVL-A1 LTR ERVL 2 3119 -2535 189 258 56 45 chr6 9508188 9508277 -172906965 - L2 LINE L2 -620 2694 2605 39578 76 13 14 chr6 9508277 9510811 -172904431 + HERVL-A1 LTR ERVL 3119 5654 0 2535 88 39 5 chr6 9510814 9511198 -172904044 + MLT2A1 LTR ERVL 4 400 -44 257 83 83 0 chr6 9511228 9511276 -172903966 + HERVL LTR ERVL 5459 5510 -144 190 54 27 27 chr6 9511296 9511333 -172903909 + (TA)n Simple_repeat Simple_repeat 2 38 0 403 55 0 0 chr6 9511378 9511433 -172903809 + MLT2A1 LTR ERVL 399 453 0 1001 297 67 42 chr6 9511433 9512011 -172903231 + L1MEc LINE L1 822 1435 -4961 2281 119 0 0 chr6 9512011 9512323 -172902919 + AluSq SINE Alu 1 312 -1 1001 297 67 42 chr6 9512323 9512717 -172902525 + L1MEc LINE L1 1435 1818 -4578 359 175 50 0 chr6 9512827 9512907 -172902335 + L1MEc LINE L1 1993 2076 -4320 315 201 112 45 chr6 9512916 9513050 -172902192 + L1MEc LINE L1 2834 2976 -3239 1201 225 87 37 chr6 9513180 9513779 -172901463 - L1MC4a LINE L1 -1193 6615 6187 369 127 0 0 chr6 9513790 9513845 -172901397 - LTR40a LTR ERVL 0 519 465 476 212 0 0 chr6 9513865 9513978 -172901264 + L1MEc LINE L1 1615 1727 -4669 402 207 35 14 chr6 9514028 9514173 -172901069 + GA-rich Low_complexity Low_complexity 2 149 0 894 285 51 42 chr6 9514173 9514527 -172900715 - LTR40b LTR ERVL -105 357 1 883 241 72 4 chr6 9514527 9514763 -172900479 - HERVL40 LTR ERVL 0 5530 5279 374 246 22 0 chr6 9515276 9515414 -172899828 - L1MEc LINE L1 -2197 4018 3878 275 204 0 32 chr6 9515416 9515509 -172899733 - L1MEc LINE L1 -4128 2268 2179 349 224 158 40 chr6 9515682 9515834 -172899408 - L1MEc LINE L1 -5167 1229 1060 331 280 59 27 chr6 9515848 9516219 -172899023 - L1MEc LINE L1 -5162 1043 661 375 296 35 66 chr6 9516571 9516889 -172898353 - L1MEc LINE L1 -6053 343 36 207 308 103 17 chr6 9516944 9517061 -172898181 + MIR3 SINE MIR 73 199 -9 249 108 0 0 chr6 9517865 9517902 -172897340 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 6384 45 13 5 chr6 9518596 9519387 -172895855 + L1PA7 LINE L1 5346 6142 -12 593 265 93 34 chr6 9519590 9519651 -172895591 + L1MC5 LINE L1 24 80 -6343 1371 163 132 0 chr6 9519651 9519754 -172895488 + AluJo SINE Alu 1 89 -223 201 39 0 0 chr6 9519754 9519780 -172895462 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1371 163 132 0 chr6 9519780 9519933 -172895309 + AluJo SINE Alu 89 291 -21 593 265 93 34 chr6 9519933 9520279 -172894963 + L1MC5 LINE L1 80 455 -5968 242 352 173 11 chr6 9520592 9520876 -172894366 + L1MC5 LINE L1 868 1197 -5226 513 159 53 0 chr6 9520946 9521097 -172894145 + GA-rich Low_complexity Low_complexity 2 160 0 554 221 6 22 chr6 9521111 9521292 -172893950 + GA-rich Low_complexity Low_complexity 1 178 0 2018 266 68 45 chr6 9521303 9523985 -172891257 + L1MC5 LINE L1 1246 4185 -2756 1043 270 64 13 chr6 9523991 9524447 -172890795 + L1MC5 LINE L1 4720 5198 -1743 1930 246 26 15 chr6 9524467 9525576 -172889666 + L1MC5 LINE L1 5620 6194 -747 209 330 112 41 chr6 9525598 9525795 -172889447 - L2 LINE L2 -742 2572 2362 325 196 10 21 chr6 9526460 9526557 -172888685 + (TATATG)n Simple_repeat Simple_repeat 2 97 0 1007 193 103 29 chr6 9527329 9527708 -172887534 + L1MC5 LINE L1 8318 8724 -32 406 261 119 45 chr6 9527753 9527929 -172887313 - MIR SINE MIR -54 208 20 236 312 106 35 chr6 9528423 9528593 -172886649 + MIR3 SINE MIR 4 185 -23 2261 188 58 42 chr6 9530406 9530955 -172884287 + MER74A LTR ERVL 1 558 0 1669 209 90 2 chr6 9531008 9531409 -172883833 + LTR32 LTR ERVL 36 471 0 1269 123 142 105 chr6 9531647 9532147 -172883095 + LTR18B LTR ERVL 2 614 0 311 292 68 19 chr6 9532551 9532712 -172882530 - ERVL-A1 LTR ERVL -715 5049 4881 416 337 49 11 chr6 9533477 9533744 -172881498 - ERVL-A1 LTR ERVL -1698 3956 3680 1906 148 7 0 chr6 9533857 9534134 -172881108 + AluSx SINE Alu 11 289 -23 268 315 37 9 chr6 9534319 9534427 -172880815 - ERVL-A1 LTR ERVL -2251 3403 3293 480 315 26 30 chr6 9534477 9534709 -172880533 - ERVL-A1 LTR ERVL -2007 2989 2759 262 381 52 8 chr6 9534917 9535166 -172880076 - ERVL-A1 LTR ERVL -4083 1681 1422 430 305 121 42 chr6 9535784 9536355 -172878887 - ERVL-A1 LTR ERVL -4374 622 7 22 0 0 0 chr6 9536853 9536875 -172878367 + AT_rich Low_complexity Low_complexity 1 22 0 362 109 0 0 chr6 9537965 9538020 -172877222 - MLT2A1 LTR ERVL 0 444 390 382 122 0 24 chr6 9538029 9538111 -172877131 + (TA)n Simple_repeat Simple_repeat 2 81 0 2871 80 5 10 chr6 9538116 9538129 -172877113 - MLT2A1 LTR ERVL -44 400 388 225 0 0 0 chr6 9538129 9538154 -172877088 + (TC)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr6 9538153 9538174 -172877068 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 2871 80 5 10 chr6 9538154 9538562 -172876680 - MLT2A1 LTR ERVL -56 388 1 1157 249 95 49 chr6 9538675 9539003 -172876239 + MER21B LTR ERV1 179 541 -322 2705 120 31 12 chr6 9539003 9539421 -172875821 - MSTA LTR MaLR -2 426 1 1157 249 95 49 chr6 9539421 9539619 -172875623 + MER21B LTR ERV1 541 729 -134 2156 112 0 3 chr6 9539780 9540076 -172875166 - AluSg1 SINE Alu -14 295 1 1677 188 21 40 chr6 9540275 9540647 -172874595 - MLT1A1 LTR MaLR 0 365 1 645 240 31 125 chr6 9542422 9542781 -172872461 + MLT1E2-int LTR MaLR 982 1306 -65 267 54 0 0 chr6 9542819 9542856 -172872386 + (TG)n Simple_repeat Simple_repeat 2 38 0 515 154 8 0 chr6 9542913 9543030 -172872212 + (TAGA)n Simple_repeat Simple_repeat 3 120 0 3553 114 12 4 chr6 9543032 9543539 -172871703 + MER9 LTR ERVK 1 511 0 1019 218 55 42 chr6 9543564 9543871 -172871371 - MLT2C1 LTR ERVL -84 313 3 717 208 7 0 chr6 9543971 9544115 -172871127 + MLT1E2 LTR MaLR 59 203 -421 840 232 0 6 chr6 9544127 9544295 -172870947 + FAM SINE Alu 1 167 -8 1443 228 121 16 chr6 9544610 9544983 -172870259 + MLT1E2 LTR MaLR 215 626 0 420 264 0 0 chr6 9545540 9545650 -172869592 + LTR33 LTR ERVL 410 519 -2 367 315 78 31 chr6 9545656 9545977 -172869265 + L1ME3A LINE L1 2314 2649 -3497 774 296 15 11 chr6 9546166 9546426 -172868816 + LTR40a LTR ERVL 105 365 -154 350 260 0 21 chr6 9546432 9546528 -172868714 + LTR33 LTR ERVL 351 444 -77 741 248 56 25 chr6 9546529 9546727 -172868515 - L2 LINE L2 -530 2784 2581 253 345 9 62 chr6 9547158 9547271 -172867971 + MIR SINE MIR 29 135 -127 1057 254 93 97 chr6 9551030 9551524 -172863718 - MLT1E LTR MaLR -49 544 1 950 248 42 30 chr6 9551581 9551985 -172863257 + L1ME3A LINE L1 2695 3103 -3043 21 57 0 0 chr6 9552000 9552035 -172863207 + AT_rich Low_complexity Low_complexity 1 35 0 733 252 97 63 chr6 9552153 9552463 -172862779 + L1ME3A LINE L1 5535 5862 -308 2521 54 0 0 chr6 9552463 9552757 -172862485 - AluY SINE Alu -17 294 1 733 252 97 63 chr6 9552757 9552827 -172862415 + L1ME3A LINE L1 5862 5928 -242 33 25 0 0 chr6 9552839 9552879 -172862363 + AT_rich Low_complexity Low_complexity 1 40 0 295 298 53 58 chr6 9552922 9553110 -172862132 + L1ME3A LINE L1 5976 6162 -8 1132 294 58 5 chr6 9553282 9553711 -172861531 + L1ME4a LINE L1 5319 5770 -2038 1351 162 28 1 chr6 9553713 9553977 -172861265 + MLT2C2 LTR ERVL 1 274 -140 2096 113 7 3 chr6 9555080 9555398 -172859844 + AluSq SINE Alu 1 319 0 239 412 7 7 chr6 9556054 9556190 -172859052 + L3 LINE CR1 676 811 -766 436 287 64 5 chr6 9556349 9556551 -172858691 + L1ME4a LINE L1 5713 5926 -195 2134 121 0 0 chr6 9556767 9557049 -172858193 - AluSg SINE Alu -26 284 3 728 263 0 0 chr6 9557804 9557964 -172857278 - MER5A DNA MER1_type 0 189 30 225 0 0 0 chr6 9558361 9558386 -172856856 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr6 9558838 9558866 -172856376 + AT_rich Low_complexity Low_complexity 1 28 0 273 97 113 0 chr6 9559948 9560010 -172855232 + L1MA7 LINE L1 6218 6286 -5 22 35 0 0 chr6 9560010 9560039 -172855203 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 9561409 9561433 -172853809 + AT_rich Low_complexity Low_complexity 1 24 0 231 309 0 0 chr6 9562171 9562226 -172853016 + polypurine Low_complexity Low_complexity 1 55 0 261 157 14 29 chr6 9562230 9562300 -172852942 + GA-rich Low_complexity Low_complexity 4 72 0 21 0 0 0 chr6 9562589 9562610 -172852632 + AT_rich Low_complexity Low_complexity 1 21 0 3289 258 56 20 chr6 9563136 9564405 -172850837 + L1M4 LINE L1 2723 4036 -2110 1563 225 72 29 chr6 9564439 9564955 -172850287 + L1M4 LINE L1 4409 4946 -1200 1539 219 25 6 chr6 9566270 9566595 -172848647 + ERVL-C1 LTR ERVL 3531 3861 -1903 * 6119 209 39 12 chr6 9566593 9568057 -172847185 + ERVL-C1 LTR ERVL 4221 5755 -9 1287 227 36 48 chr6 9568058 9568471 -172846771 + MLT2C1 LTR ERVL 1 464 0 22 0 0 0 chr6 9569989 9570011 -172845231 + AT_rich Low_complexity Low_complexity 1 22 0 409 304 77 17 chr6 9570844 9571025 -172844217 + MIR SINE MIR 21 212 -50 274 349 18 66 chr6 9571238 9571404 -172843838 + MIR SINE MIR 57 214 -48 18815 110 22 14 chr6 9571837 9574684 -172840558 + L1PA6 LINE L1 10 2879 -3267 5355 49 3 0 chr6 9574694 9575346 -172839896 - L1PA5 LINE L1 -8 6146 5493 * 18810 59 1 0 chr6 9575343 9575619 -172839623 + L1PA6 LINE L1 2863 3137 -3017 2766 16 0 0 chr6 9575619 9575923 -172839319 + AluYa5 SINE Alu 1 304 -7 18810 59 1 0 chr6 9575923 9578955 -172836287 + L1PA6 LINE L1 3137 6148 -6 2116 116 3 0 chr6 9578989 9579295 -172835947 - AluSx SINE Alu 0 307 1 222 276 226 50 chr6 9579446 9579627 -172835615 + MIR SINE MIR 40 252 -10 182 105 26 0 chr6 9579627 9579665 -172835577 + T-rich Low_complexity Low_complexity 2 40 0 236 238 12 25 chr6 9579683 9579763 -172835479 + CT-rich Low_complexity Low_complexity 4 82 0 860 313 148 49 chr6 9579806 9581456 -172833786 - L2 LINE L2 -2 3311 1493 1347 14 0 0 chr6 9581641 9581789 -172833453 + AluY SINE Alu 158 305 -6 1463 199 78 65 chr6 9582788 9583235 -172832007 + LTR40b LTR ERVL 10 462 0 407 323 78 91 chr6 9584281 9584588 -172830654 - L2 LINE L2 -2 3270 2968 767 365 159 14 chr6 9584618 9585530 -172829712 - L2 LINE L2 -417 2897 1854 22 35 0 0 chr6 9585751 9585780 -172829462 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr6 9586416 9586456 -172828786 + AT_rich Low_complexity Low_complexity 1 40 0 332 326 76 15 chr6 9587008 9587146 -172828096 + MIR SINE MIR 7 151 -62 1129 190 18 18 chr6 9587533 9587759 -172827483 - MLT1E1 LTR MaLR -1 653 428 646 224 0 28 chr6 9587812 9587955 -172827287 - MLT1E1 LTR MaLR -514 140 2 253 361 12 36 chr6 9588336 9588502 -172826740 + MIR SINE MIR 50 211 -51 363 174 29 0 chr6 9588556 9588625 -172826617 - MER116 DNA Mariner -2 78 8 21 0 0 0 chr6 9589463 9589484 -172825758 + AT_rich Low_complexity Low_complexity 1 21 0 251 146 146 0 chr6 9590038 9590086 -172825156 - MLT1J LTR MaLR -321 190 136 16796 134 14 13 chr6 9590110 9591254 -172823988 + Tigger2 DNA MER2_type 1 1142 -1576 2126 135 0 0 chr6 9591254 9591558 -172823684 + AluSg SINE Alu 1 304 -6 16796 134 14 13 chr6 9591558 9593089 -172822153 + Tigger2 DNA MER2_type 1142 2680 -38 270 245 43 101 chr6 9593743 9593882 -172821360 - LTR67 LTR ERVL -144 413 283 1761 192 39 0 chr6 9593983 9594317 -172820925 - MER7A DNA MER2_type -1 345 1 466 223 59 94 chr6 9594899 9595101 -172820141 + LTR50 LTR ERVL 139 333 -462 306 244 194 50 chr6 9595096 9595256 -172819986 + LTR50 LTR ERVL 481 663 -132 * 180 176 0 0 chr6 9595307 9595341 -172819901 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 265 263 114 0 chr6 9595411 9595525 -172819717 + LTR50 LTR ERVL 660 786 -9 2345 78 0 0 chr6 9595705 9596008 -172819234 + AluSg SINE Alu 1 303 0 444 296 56 52 chr6 9596126 9596339 -172818903 - MIR SINE MIR -40 222 9 357 250 121 36 chr6 9598428 9598568 -172816674 + MIR SINE MIR 111 262 0 2180 94 0 3 chr6 9598805 9599118 -172816124 + AluY SINE Alu 1 312 0 240 326 156 22 chr6 9599184 9599454 -172815788 + L2 LINE L2 3008 3313 0 195 100 0 0 chr6 9600326 9600356 -172814886 + (TTA)n Simple_repeat Simple_repeat 3 32 0 326 287 21 21 chr6 9600431 9600525 -172814717 - L2 LINE L2 -8 3264 3171 381 170 69 202 chr6 9600721 9600909 -172814333 + MIR SINE MIR 79 241 -21 1458 144 44 31 chr6 9601165 9601484 -172813758 - MER33 DNA MER1_type 0 324 2 185 323 50 72 chr6 9601585 9601904 -172813338 - L2 LINE L2 -580 2734 2423 549 246 113 0 chr6 9602236 9602378 -172812864 + MIR SINE MIR 4 161 -101 29 28 0 0 chr6 9602636 9602672 -172812570 + AT_rich Low_complexity Low_complexity 1 36 0 195 42 0 0 chr6 9603394 9603418 -172811824 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2133 121 0 0 chr6 9603420 9603701 -172811541 - AluSx SINE Alu -31 281 1 188 377 14 0 chr6 9604822 9604891 -172810351 + MIR3 SINE MIR 128 197 -11 36 40 0 0 chr6 9605616 9605666 -172809576 + AT_rich Low_complexity Low_complexity 1 50 0 195 69 0 0 chr6 9608072 9608101 -172807141 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 256 99 0 62 chr6 9608199 9608280 -172806962 + (TA)n Simple_repeat Simple_repeat 2 77 0 240 35 0 0 chr6 9609499 9609528 -172805714 + (CA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr6 9609742 9609772 -172805470 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 9613207 9613235 -172802007 + AT_rich Low_complexity Low_complexity 1 28 0 181 361 0 0 chr6 9613521 9613593 -172801649 - MIR SINE MIR -138 124 53 325 143 13 13 chr6 9613970 9614047 -172801195 + A-rich Low_complexity Low_complexity 2 78 0 38 61 0 0 chr6 9614476 9614542 -172800700 + AT_rich Low_complexity Low_complexity 1 66 0 32 43 0 0 chr6 9614593 9614639 -172800603 + AT_rich Low_complexity Low_complexity 1 46 0 304 266 64 0 chr6 9614705 9614799 -172800443 + L1MC4 LINE L1 6593 6692 -1350 7261 177 43 31 chr6 9617781 9618669 -172796573 + L1MA9 LINE L1 3689 4565 -1747 2551 113 11 3 chr6 9618669 9619039 -172796203 - THE1C LTR MaLR -2 373 1 9026 121 60 44 chr6 9619039 9620594 -172794648 - THE1C-int LTR MaLR 0 1580 1 2616 117 0 0 chr6 9620594 9620969 -172794273 - THE1C LTR MaLR 0 375 1 7261 177 43 31 chr6 9620969 9621843 -172793399 + L1MA9 LINE L1 4565 5427 -885 2272 8 0 4 chr6 9621843 9622097 -172793145 - AluYa5 SINE Alu -3 308 56 7261 177 43 31 chr6 9622097 9622945 -172792297 + L1MA9 LINE L1 5427 6312 0 291 308 67 0 chr6 9623284 9623388 -172791854 - MIR SINE MIR -20 242 132 263 309 70 39 chr6 9623773 9624003 -172791239 - L2 LINE L2 -46 3267 3031 1509 193 23 16 chr6 9624747 9625053 -172790189 + AluJb SINE Alu 1 308 -4 22 35 0 0 chr6 9626465 9626494 -172788748 + AT_rich Low_complexity Low_complexity 1 29 0 3140 26 3 0 chr6 9626533 9626911 -172788331 - L1PA4 LINE L1 -8 6147 5769 214 366 0 36 chr6 9627197 9627309 -172787933 + MIR3 SINE MIR 10 117 -91 22 80 0 0 chr6 9627810 9627860 -172787382 + AT_rich Low_complexity Low_complexity 1 50 0 1842 127 15 0 chr6 9628863 9629122 -172786120 + AluSg SINE Alu 3 265 -45 25 0 0 0 chr6 9629122 9629147 -172786095 + AT_rich Low_complexity Low_complexity 1 25 0 186 71 0 0 chr6 9629816 9629844 -172785398 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 212 390 67 0 chr6 9629917 9630022 -172785220 + L2 LINE L2 3142 3253 -19 197 397 48 8 chr6 9630495 9630621 -172784621 + MIR SINE MIR 20 150 -58 330 377 24 6 chr6 9630939 9631106 -172784136 + L3 LINE CR1 1406 1575 -2 1095 178 73 32 chr6 9632055 9632159 -172783083 + AluJo SINE Alu 26 124 -188 201 39 0 0 chr6 9632159 9632185 -172783057 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1095 178 73 32 chr6 9632185 9632327 -172782915 + AluJo SINE Alu 124 282 -30 1411 233 19 29 chr6 9632606 9632984 -172782258 - MLT1A2 LTR MaLR 0 374 1 1284 195 74 0 chr6 9633024 9633280 -172781962 - MLT1A2-int LTR MaLR -6 1729 1455 2099 261 67 3 chr6 9633281 9633845 -172781397 - ERVL-B1 LTR ERVL -5163 601 2 1402 236 117 29 chr6 9633846 9633886 -172781356 - MLT2B1 LTR ERVL 0 520 485 293 62 21 0 chr6 9633886 9633934 -172781308 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1402 236 117 29 chr6 9633934 9634371 -172780871 - MLT2B1 LTR ERVL -35 485 1 384 192 0 26 chr6 9634483 9634561 -172780681 - MLT2D LTR ERVL -338 76 1 360 374 53 45 chr6 9634962 9635318 -172779924 - L2 LINE L2 0 3272 2914 228 35 0 0 chr6 9635422 9635451 -172779791 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1964 165 13 13 chr6 9635494 9635892 -172779350 - L1M4 LINE L1 -1051 5095 4672 895 288 66 70 chr6 9635899 9636399 -172778843 + LTR33A LTR ERVL 23 520 -3 3084 167 57 25 chr6 9636488 9636910 -172778332 + L1MA2 LINE L1 2860 3267 -3037 2200 106 0 0 chr6 9636910 9637194 -172778048 + AluSc SINE Alu 1 284 -25 3084 167 57 25 chr6 9637194 9639428 -172775814 + L1MA2 LINE L1 3267 6298 -6 3084 117 68 11 chr6 9639428 9639985 -172775257 + L1MA2 LINE L1 5716 6304 0 388 270 217 19 chr6 9641007 9641270 -172773972 + MLT1H1 LTR MaLR 241 555 0 21 0 0 0 chr6 9642466 9642487 -172772755 + AT_rich Low_complexity Low_complexity 1 21 0 1640 167 0 11 chr6 9643212 9643481 -172771761 - AluJo SINE Alu -31 281 16 696 119 0 0 chr6 9644133 9644242 -172771000 + (TA)n Simple_repeat Simple_repeat 1 109 0 256 280 164 9 chr6 9644277 9644424 -172770818 + MIR SINE MIR 38 204 -58 220 273 0 30 chr6 9644631 9644697 -172770545 - MIR3 SINE MIR -32 176 113 2349 179 47 61 chr6 9646481 9646990 -172768252 + MLT2B1 LTR ERVL 17 518 -2 3990 136 96 102 chr6 9647963 9649344 -172765898 - pTR5 LTR ERV1 0 2438 743 283 259 17 78 chr6 9649962 9649988 -172765254 - MIR3 SINE MIR -18 190 164 1886 148 10 7 chr6 9649988 9650279 -172764963 + AluSx SINE Alu 1 292 -20 283 259 17 78 chr6 9650279 9650368 -172764874 - MIR3 SINE MIR -44 164 82 9180 93 12 17 chr6 9652133 9654161 -172761081 - L1PA8 LINE L1 -128 6044 4030 22 0 0 0 chr6 9654383 9654405 -172760837 + AT_rich Low_complexity Low_complexity 1 22 0 622 253 11 11 chr6 9655148 9655326 -172759916 + LTR41 LTR ERVL 1 178 -595 360 236 16 41 chr6 9655897 9656020 -172759222 + LTR41 LTR ERVL 654 773 0 183 322 49 2 chr6 9656109 9656271 -172758971 + MIR SINE MIR 53 255 -7 201 300 17 0 chr6 9656703 9656763 -172758479 - MIR SINE MIR -118 90 30 218 310 52 69 chr6 9657582 9657698 -172757544 + MIR SINE MIR 95 208 -54 323 248 238 0 chr6 9658280 9658381 -172756861 - L2 LINE L2 0 3313 3189 4331 129 15 7 chr6 9659382 9660105 -172755137 + L1MA5A LINE L1 5565 6293 -4 23 0 0 0 chr6 9660164 9660187 -172755055 + AT_rich Low_complexity Low_complexity 1 23 0 300 269 54 23 chr6 9661189 9661357 -172753885 - MLT1J2 LTR MaLR -13 428 266 391 235 272 22 chr6 9661520 9661792 -172753450 - L1MC4a LINE L1 -1961 5847 5508 1238 135 5 0 chr6 9661883 9662068 -172753174 - AluSg/x SINE Alu -5 307 122 318 26 0 0 chr6 9662252 9662291 -172752951 + (CA)n Simple_repeat Simple_repeat 2 40 0 1943 136 45 0 chr6 9662388 9662674 -172752568 - AluSx SINE Alu -10 302 4 21 36 0 0 chr6 9663379 9663407 -172751835 + AT_rich Low_complexity Low_complexity 1 28 0 481 278 129 36 chr6 9664168 9664502 -172750740 + LTR16A1 LTR ERVL 48 412 -45 415 316 62 16 chr6 9664671 9664986 -172750256 + MLT1H1 LTR MaLR 226 553 -2 2244 78 6 37 chr6 9665012 9665352 -172749890 + AluY SINE Alu 1 311 0 273 283 0 10 chr6 9666029 9666128 -172749114 + (TA)n Simple_repeat Simple_repeat 2 99 0 26 0 0 0 chr6 9667707 9667733 -172747509 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr6 9668453 9668489 -172746753 + AT_rich Low_complexity Low_complexity 1 36 0 362 288 58 74 chr6 9668885 9669330 -172745912 + L1ME4a LINE L1 5469 5906 -215 192 344 0 31 chr6 9669795 9669859 -172745383 + L2 LINE L2 3230 3291 -22 32 26 0 0 chr6 9670394 9670433 -172744809 + AT_rich Low_complexity Low_complexity 1 39 0 678 250 43 0 chr6 9670644 9670808 -172744434 + MER5B DNA MER1_type 7 177 -1 212 246 0 31 chr6 9672092 9672157 -172743085 + A-rich Low_complexity Low_complexity 2 64 0 299 274 245 0 chr6 9672165 9672267 -172742975 - MIR SINE MIR -58 204 78 235 202 28 64 chr6 9672780 9672889 -172742353 + (TATAA)n Simple_repeat Simple_repeat 2 106 0 418 301 13 51 chr6 9672899 9673055 -172742187 - MIR3 SINE MIR -13 195 46 204 219 0 0 chr6 9673887 9673928 -172741314 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 26 50 0 0 chr6 9676043 9676083 -172739159 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr6 9676302 9676326 -172738916 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 9678069 9678091 -172737151 + AT_rich Low_complexity Low_complexity 1 22 0 192 184 0 0 chr6 9678292 9678341 -172736901 + (CA)n Simple_repeat Simple_repeat 2 50 0 360 0 0 0 chr6 9681224 9681264 -172733978 + (TG)n Simple_repeat Simple_repeat 2 41 0 237 270 11 0 chr6 9681311 9681400 -172733842 - L1MC4 LINE L1 -1339 6703 6614 336 228 12 18 chr6 9681403 9681570 -172733672 + (TA)n Simple_repeat Simple_repeat 1 166 0 782 172 0 15 chr6 9681570 9681704 -172733538 - FLAM_A SINE Alu -1 132 1 527 309 94 16 chr6 9681735 9681991 -172733251 - MLT1J2 LTR MaLR -108 342 67 307 311 68 89 chr6 9682577 9682992 -172732250 + MLT1H LTR MaLR 1 406 -143 22 80 0 0 chr6 9683442 9683492 -172731750 + AT_rich Low_complexity Low_complexity 1 50 0 1324 221 6 48 chr6 9684053 9684410 -172730832 - L1MB7 LINE L1 -9 6175 5834 1722 258 86 53 chr6 9684412 9684622 -172730620 - L1M4c LINE L1 -3175 3782 3580 207 0 0 0 chr6 9684622 9684645 -172730597 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1722 258 86 53 chr6 9684645 9684657 -172730585 - L1M4c LINE L1 -3377 3580 3570 1910 134 30 13 chr6 9684657 9684955 -172730287 - AluSx SINE Alu -9 303 1 7657 27 0 0 chr6 9684956 9686439 -172728803 + L1PA4 LINE L1 4673 6155 0 1722 258 86 53 chr6 9686439 9688608 -172726634 - L1M4c LINE L1 -3386 3571 1207 180 111 0 0 chr6 9688613 9688640 -172726602 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 328 323 50 27 chr6 9689136 9689356 -172725886 - L1M4c LINE L1 -6611 248 24 216 97 0 0 chr6 9690476 9690507 -172724735 + (CAA)n Simple_repeat Simple_repeat 2 32 0 337 359 8 8 chr6 9691248 9691365 -172723877 - MIR3 SINE MIR -7 201 85 21 36 0 0 chr6 9691624 9691652 -172723590 + AT_rich Low_complexity Low_complexity 1 28 0 39 0 0 0 chr6 9692171 9692210 -172723032 + AT_rich Low_complexity Low_complexity 1 39 0 2426 109 17 0 chr6 9692916 9693265 -172721977 - L1PA11 LINE L1 -2 6172 5818 231 157 20 20 chr6 9694063 9694114 -172721128 + CT-rich Low_complexity Low_complexity 3 53 0 2528 45 3 16 chr6 9694761 9695073 -172720169 + AluY SINE Alu 1 308 -3 198 0 0 0 chr6 9695543 9695565 -172719677 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr6 9695567 9695589 -172719653 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 184 302 0 32 chr6 9695729 9695792 -172719450 + L2 LINE L2 3248 3308 -5 256 298 94 47 chr6 9696021 9696192 -172719050 + MIR SINE MIR 80 258 -4 2066 114 0 3 chr6 9696299 9696596 -172718646 + AluSg SINE Alu 1 296 -14 223 416 10 0 chr6 9696598 9696699 -172718543 - MIR SINE MIR -87 121 20 2174 103 0 41 chr6 9696893 9697212 -172718030 - AluSg SINE Alu -4 306 1 203 339 0 0 chr6 9697247 9697303 -172717939 + L2 LINE L2 3201 3256 -16 694 243 68 10 chr6 9697357 9697563 -172717679 + MER20 DNA MER1_type 2 219 0 21 36 0 0 chr6 9697610 9697638 -172717604 + AT_rich Low_complexity Low_complexity 1 28 0 2015 91 0 7 chr6 9697803 9698078 -172717164 - AluY SINE Alu -38 273 1 662 200 213 0 chr6 9698078 9698228 -172717014 - MER5A DNA MER1_type -5 184 3 2107 120 3 19 chr6 9698291 9698600 -172716642 - AluSp SINE Alu -9 304 1 953 109 0 0 chr6 9699469 9699607 -172715635 + AluSg/x SINE Alu 173 310 0 279 0 0 0 chr6 9699944 9699975 -172715267 + (CA)n Simple_repeat Simple_repeat 2 32 0 213 65 0 0 chr6 9700093 9700124 -172715118 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 2308 91 3 0 chr6 9704704 9705000 -172710242 - AluSq SINE Alu -16 297 1 210 256 0 77 chr6 9705083 9705129 -172710113 - L2 LINE L2 -5 3308 3269 2163 180 105 38 chr6 9705129 9705652 -172709590 - MER74A LTR ERVL 0 558 1 210 256 0 77 chr6 9705652 9705683 -172709559 - L2 LINE L2 -44 3269 3237 467 244 78 93 chr6 9705717 9705922 -172709320 + MIR SINE MIR 50 251 -11 21 0 0 0 chr6 9706202 9706223 -172709019 + AT_rich Low_complexity Low_complexity 1 21 0 1179 216 47 16 chr6 9706259 9706514 -172708728 + AluJb SINE Alu 1 263 -49 1459 249 46 11 chr6 9707447 9707969 -172707273 - L1M4 LINE L1 -2967 3179 2640 281 312 43 0 chr6 9708019 9708112 -172707130 + HERVL LTR ERVL 5242 5338 -316 185 262 143 24 chr6 9708433 9708517 -172706725 - MIR SINE MIR -51 211 118 468 330 34 0 chr6 9708636 9708815 -172706427 - L2 LINE L2 0 3313 3129 1983 141 144 11 chr6 9710448 9710824 -172704418 + MSTA LTR MaLR 3 428 0 23 33 0 0 chr6 9711248 9711278 -172703964 + AT_rich Low_complexity Low_complexity 1 30 0 1603 161 88 21 chr6 9711545 9711692 -172703550 - L1MA9 LINE L1 0 6312 6176 216 0 0 0 chr6 9711692 9711716 -172703526 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 324 0 0 0 chr6 9711715 9711751 -172703491 + (GA)n Simple_repeat Simple_repeat 1 36 0 1603 161 88 21 chr6 9711716 9711976 -172703266 - L1MA9 LINE L1 -136 6176 5915 22 35 0 0 chr6 9712164 9712193 -172703049 + AT_rich Low_complexity Low_complexity 1 29 0 3948 211 6 0 chr6 9712246 9712952 -172702290 + L1MA4 LINE L1 1 710 -4618 3283 239 31 6 chr6 9712982 9713931 -172701311 + L1MA4 LINE L1 772 1743 -4585 12263 201 24 20 chr6 9713932 9718629 -172696613 + L1MA4 LINE L1 1804 6476 -6 1471 200 7 4 chr6 9719104 9719374 -172695868 + AluJo SINE Alu 12 282 -30 294 206 32 0 chr6 9719417 9719480 -172695762 - MIR SINE MIR -142 120 56 22 56 0 0 chr6 9719551 9719587 -172695655 + AT_rich Low_complexity Low_complexity 1 36 0 2039 119 11 0 chr6 9720852 9721180 -172694062 + AluSc SINE Alu 1 331 0 332 280 59 29 chr6 9722355 9722499 -172692743 - MIR SINE MIR -51 157 47 328 305 40 66 chr6 9722907 9723255 -172691987 - L1MEd LINE L1 -5184 935 597 198 364 23 11 chr6 9723763 9723851 -172691391 + MIR SINE MIR 48 136 -126 44 96 0 0 chr6 9723852 9723987 -172691255 + AT_rich Low_complexity Low_complexity 1 135 0 415 301 38 75 chr6 9724513 9724805 -172690437 - L3b LINE CR1 -194 1389 1109 370 376 39 6 chr6 9725387 9725565 -172689677 + MLT1J LTR MaLR 278 461 -50 1881 115 7 54 chr6 9725957 9726274 -172688968 + AluSg SINE Alu 1 303 0 1735 116 12 4 chr6 9726911 9727169 -172688073 - MER41B LTR ERV1 -375 260 1 480 285 7 7 chr6 9727169 9727306 -172687936 - MIR SINE MIR -114 148 12 306 274 0 0 chr6 9727990 9728074 -172687168 + L1ME LINE L1 42 125 -5994 1127 198 9 4 chr6 9728086 9728313 -172686929 + L1MC1 LINE L1 6106 6333 0 2497 214 83 82 chr6 9728348 9729079 -172686163 - MER21B LTR ERV1 -4 859 125 2207 125 58 3 chr6 9729079 9729424 -172685818 - THE1B LTR MaLR 0 364 1 2497 214 83 82 chr6 9729424 9729538 -172685704 - MER21B LTR ERV1 -738 125 13 469 328 43 48 chr6 9729782 9730133 -172685109 + L1ME LINE L1 403 751 -5368 389 310 69 50 chr6 9730227 9731346 -172683896 + L1ME LINE L1 2824 3963 -2166 2162 119 0 0 chr6 9731350 9731671 -172683571 + AluSx SINE Alu 1 312 0 181 371 0 0 chr6 9731959 9732048 -172683194 + L2 LINE L2 1743 1831 -1483 268 319 125 19 chr6 9732090 9732250 -172682992 + L2 LINE L2 1930 2106 -1208 299 306 104 3 chr6 9732335 9732632 -172682610 + L1ME LINE L1 4265 4591 -1538 282 323 15 8 chr6 9732924 9733054 -172682188 + L1ME LINE L1 5719 5849 -296 22 0 0 0 chr6 9733275 9733297 -172681945 + AT_rich Low_complexity Low_complexity 1 22 0 234 280 67 27 chr6 9734228 9734303 -172680939 + MIR SINE MIR 66 143 -119 194 281 56 56 chr6 9736372 9736461 -172678781 + MIR3 SINE MIR 90 178 -30 21 36 0 0 chr6 9736837 9736865 -172678377 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 9737278 9737300 -172677942 + AT_rich Low_complexity Low_complexity 1 22 0 2149 118 0 3 chr6 9737536 9737825 -172677417 - AluSx SINE Alu -24 288 1 186 103 0 0 chr6 9738011 9738040 -172677202 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 308 273 62 57 chr6 9738453 9738629 -172676613 + MLT1J LTR MaLR 243 419 -92 219 221 29 36 chr6 9740458 9740598 -172674644 + CT-rich Low_complexity Low_complexity 3 141 0 467 138 11 0 chr6 9740742 9740829 -172674413 + (TA)n Simple_repeat Simple_repeat 1 88 0 819 133 21 14 chr6 9741660 9741803 -172673439 + L1PB4 LINE L1 6011 6154 -2 191 309 0 0 chr6 9742447 9742502 -172672740 - L3 LINE CR1 -6 1571 1517 208 362 14 0 chr6 9742640 9742709 -172672533 - L3 LINE CR1 -219 1358 1289 270 0 0 0 chr6 9742794 9742824 -172672418 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 360 0 0 0 chr6 9742823 9742863 -172672379 + (CA)n Simple_repeat Simple_repeat 1 40 0 311 353 24 94 chr6 9742916 9743171 -172672071 + L2 LINE L2 3036 3272 0 639 218 17 75 chr6 9743409 9743648 -172671594 - L1ME3A LINE L1 -23 6147 5923 * 2940 245 35 62 chr6 9743629 9744143 -172671099 - L1ME3A LINE L1 -1109 5037 4511 2175 122 0 0 chr6 9744143 9744437 -172670805 - AluSx SINE Alu -18 294 1 2940 245 35 62 chr6 9744437 9744948 -172670294 - L1ME3A LINE L1 -1635 4511 4048 1652 168 21 7 chr6 9744948 9745239 -172670003 + AluJb SINE Alu 5 299 -13 2940 245 35 62 chr6 9745239 9745436 -172669806 - L1ME3A LINE L1 -2098 4048 3847 204 281 47 0 chr6 9745619 9745683 -172669559 - MIR SINE MIR 0 262 196 1997 131 31 3 chr6 9745694 9745985 -172669257 - AluSp SINE Alu -14 299 1 287 340 38 0 chr6 9746067 9746173 -172669069 - MIR SINE MIR -95 167 58 24 0 0 0 chr6 9746608 9746632 -172668610 + AT_rich Low_complexity Low_complexity 1 24 0 212 333 40 0 chr6 9747827 9747902 -172667340 - L2 LINE L2 -2 3270 3193 2052 129 3 16 chr6 9749248 9749551 -172665691 + AluSx SINE Alu 4 302 -10 280 303 189 0 chr6 9750024 9750146 -172665096 - L2 LINE L2 -1 3271 3127 1978 138 37 40 chr6 9750289 9750665 -172664577 - THE1C LTR MaLR 0 375 1 230 232 18 0 chr6 9750837 9750893 -172664349 + MER91 DNA MER1_type 83 139 -1 487 304 70 5 chr6 9751226 9751427 -172663815 - MIR SINE MIR 0 262 49 906 163 32 116 chr6 9751446 9751697 -172663545 + MSTD LTR MaLR 167 396 0 568 189 56 103 chr6 9751781 9752014 -172663228 - L1MC5 LINE L1 -1002 6959 6738 4806 179 18 20 chr6 9752625 9753521 -172661721 + MER54A LTR ERVL 8 901 0 743 323 60 60 chr6 9753521 9754075 -172661167 - HAL1b LINE L1 -748 600 47 2202 121 0 7 chr6 9754539 9754845 -172660397 - AluSx SINE Alu -8 304 1 29 60 0 0 chr6 9755538 9755588 -172659654 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr6 9755628 9755649 -172659593 + AT_rich Low_complexity Low_complexity 1 21 0 362 267 102 45 chr6 9756180 9756356 -172658886 - MER117 DNA MER1_type -1 196 11 186 402 30 12 chr6 9758884 9759048 -172656194 + L2 LINE L2 2896 3062 -210 22 0 0 0 chr6 9760015 9760037 -172655205 + AT_rich Low_complexity Low_complexity 1 22 0 2488 76 0 0 chr6 9761298 9761602 -172653640 - AluSp SINE Alu -9 304 1 189 0 0 0 chr6 9762776 9762797 -172652445 + (A)n Simple_repeat Simple_repeat 1 21 0 886 174 46 78 chr6 9763209 9763427 -172651815 + MER20 DNA MER1_type 6 216 -3 22 35 0 0 chr6 9764643 9764672 -172650570 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 9764797 9764818 -172650424 + AT_rich Low_complexity Low_complexity 1 21 0 297 320 8 0 chr6 9764868 9764993 -172650249 + (TA)n Simple_repeat Simple_repeat 2 127 0 422 189 35 51 chr6 9768056 9768200 -172647042 - L1ME3 LINE L1 -8 6162 6027 2360 223 79 53 chr6 9768584 9768760 -172646482 - L1MD3 LINE L1 0 8042 7872 186 43 0 0 chr6 9768760 9768783 -172646459 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 2360 223 79 53 chr6 9768783 9769433 -172645809 - L1MD3 LINE L1 -170 7872 7207 445 234 130 5 chr6 9769423 9769607 -172645635 - L1MC4 LINE L1 -871 7171 6965 * 1005 207 43 110 chr6 9769618 9769716 -172645526 + MLT1A1 LTR MaLR 1 104 -261 1579 126 99 90 chr6 9769716 9770050 -172645192 - MER1B DNA MER1_type 0 337 1 1005 207 43 110 chr6 9770050 9770342 -172644900 + MLT1A1 LTR MaLR 104 365 0 348 209 11 44 chr6 9770342 9770433 -172644809 - L1MC4a LINE L1 -927 6881 6794 440 306 13 39 chr6 9772579 9772809 -172642433 + HERVL LTR ERVL 3777 4000 -1485 819 332 52 50 chr6 9773036 9773511 -172641731 + HERVL LTR ERVL 4244 4717 -1047 2271 73 0 30 chr6 9773511 9773812 -172641430 + AluY SINE Alu 1 292 -19 819 332 52 50 chr6 9773812 9774491 -172640751 + HERVL LTR ERVL 4717 5368 -396 276 224 15 45 chr6 9774657 9774724 -172640518 + MLT1D LTR MaLR 1 65 -440 843 231 55 107 chr6 9774754 9775157 -172640085 + MLT2C2 LTR ERVL 83 464 0 619 206 144 45 chr6 9775179 9775459 -172639783 + MLT1D LTR MaLR 59 347 -43 862 188 0 18 chr6 9775905 9776070 -172639172 + MER5A DNA MER1_type 3 164 -25 255 352 23 55 chr6 9777909 9778037 -172637205 - L2 LINE L2 0 3272 3149 186 394 31 8 chr6 9778046 9778173 -172637069 + L2 LINE L2 3143 3272 0 364 226 21 21 chr6 9778271 9778364 -172636878 - MER103 DNA DNA -19 147 55 869 169 90 6 chr6 9780329 9780506 -172634736 + LTR47A LTR ERVL 261 452 0 243 241 132 71 chr6 9780785 9780897 -172634345 + L1M4 LINE L1 4078 4182 -1964 249 83 0 0 chr6 9780897 9780933 -172634309 + (TTA)n Simple_repeat Simple_repeat 2 37 0 243 241 132 71 chr6 9780933 9781147 -172634095 + L1M4 LINE L1 4182 4441 -1705 2361 109 0 3 chr6 9781339 9781652 -172633590 - AluSx SINE Alu 0 312 1 543 287 62 10 chr6 9783378 9783573 -172631669 - MIR SINE MIR -12 250 46 21 0 0 0 chr6 9784123 9784144 -172631098 + AT_rich Low_complexity Low_complexity 1 21 0 276 120 0 0 chr6 9785712 9785762 -172629480 + (TG)n Simple_repeat Simple_repeat 1 50 0 255 324 50 50 chr6 9787021 9787203 -172628039 + MIR SINE MIR 49 230 -32 2545 121 8 0 chr6 9787337 9787709 -172627533 - THE1C LTR MaLR 0 375 1 318 318 62 36 chr6 9788228 9788420 -172626822 - MIR3 SINE MIR -3 205 9 1041 147 0 0 chr6 9790454 9790661 -172624581 - AluSq SINE Alu 0 340 134 2279 96 3 7 chr6 9790661 9790963 -172624279 - AluSg SINE Alu -9 301 1 1586 160 47 13 chr6 9791435 9791753 -172623489 - L1MB4 LINE L1 0 6180 5852 675 164 16 16 chr6 9791789 9791917 -172623325 - L1P LINE L1 -1072 5074 4947 * 2633 174 42 53 chr6 9791910 9791957 -172623285 - L1MB4 LINE L1 -318 5862 5816 2473 53 3 0 chr6 9791957 9792260 -172622982 - AluY SINE Alu -7 304 1 2633 174 42 53 chr6 9792260 9792925 -172622317 - L1MB4 LINE L1 -364 5816 5173 377 327 0 36 chr6 9793284 9793449 -172621793 + MIR SINE MIR 54 212 -50 183 80 0 0 chr6 9794149 9794174 -172621068 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 294 313 0 0 chr6 9794441 9794524 -172620718 + MIR SINE MIR 120 202 -60 1609 92 1 6 chr6 9794825 9795050 -172620192 - L1PA8 LINE L1 -188 5943 5720 1213 113 20 10 chr6 9795050 9795244 -172619998 + L1PA8 LINE L1 5974 6170 -2 1609 92 1 6 chr6 9795244 9795255 -172619987 - L1PA8A LINE L1 -411 5720 5710 347 250 33 33 chr6 9795351 9795471 -172619771 - MER103 DNA DNA -2 164 45 318 306 104 31 chr6 9795544 9795768 -172619474 + MIR SINE MIR 23 259 -3 229 212 62 115 chr6 9796055 9796168 -172619074 - L2 LINE L2 0 3313 3207 245 317 49 0 chr6 9796510 9796592 -172618650 - L2 LINE L2 -8 3264 3179 2325 138 35 30 chr6 9797255 9797683 -172617559 - Tigger2a DNA MER2_type -3 431 2 343 259 0 0 chr6 9799558 9799643 -172615599 - L1ME3A LINE L1 -4 6166 6082 649 249 86 10 chr6 9799658 9799855 -172615387 + LTR50 LTR ERVL 11 222 -573 351 0 0 0 chr6 9799980 9800019 -172615223 + (A)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chr6 9800872 9800892 -172614350 + (TAAAAA)n Simple_repeat Simple_repeat 6 25 0 2040 87 6 113 chr6 9800923 9801267 -172613975 + AluSc SINE Alu 1 307 -2 21 71 0 0 chr6 9801284 9801326 -172613916 + AT_rich Low_complexity Low_complexity 1 42 0 567 247 35 119 chr6 9801665 9802009 -172613233 + L1MC4a LINE L1 5628 5942 -1866 41616 74 5 5 chr6 9802092 9808592 -172606650 + L1PA5 LINE L1 11 6150 -4 252 128 0 0 chr6 9808581 9808620 -172606622 + L1MC4a LINE L1 6560 6598 -1210 * 549 306 29 29 chr6 9808821 9808991 -172606251 + MIR SINE MIR 36 205 -57 1685 230 66 60 chr6 9809474 9810238 -172605004 + LTR1B LTR ERV1 1 811 -15 326 265 119 63 chr6 9810548 9810816 -172604426 + L1ME4a LINE L1 5621 5903 -218 408 20 0 0 chr6 9813110 9813159 -172602083 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr6 9813375 9813397 -172601845 + AT_rich Low_complexity Low_complexity 1 22 0 270 95 0 0 chr6 9814527 9814569 -172600673 + (TC)n Simple_repeat Simple_repeat 2 43 0 23 68 0 0 chr6 9818363 9818407 -172596835 + AT_rich Low_complexity Low_complexity 1 44 0 2876 6 0 21 chr6 9818504 9818829 -172596413 + AluYb8 SINE Alu 1 318 0 329 267 103 36 chr6 9819132 9819297 -172595945 + MIR SINE MIR 49 224 -38 487 257 18 0 chr6 9819300 9819409 -172595833 + L1MB8 LINE L1 4013 4123 -2023 3906 155 48 23 chr6 9819411 9820102 -172595140 - MER50 LTR ERV1 -24 710 3 3266 225 45 10 chr6 9820103 9821640 -172593602 + L1MB8 LINE L1 4119 5888 -290 264 258 32 8 chr6 9822528 9822652 -172592590 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 316 346 20 0 chr6 9822678 9822779 -172592463 + MER5A DNA MER1_type 87 189 0 264 271 25 42 chr6 9823696 9823814 -172591428 - L2 LINE L2 -8 3305 3190 269 308 60 26 chr6 9825252 9825369 -172589873 - L2 LINE L2 -6 3266 3146 2270 80 0 3 chr6 9828095 9828406 -172586836 + AluSg SINE Alu 1 310 0 240 35 0 0 chr6 9828415 9828444 -172586798 + (TG)n Simple_repeat Simple_repeat 2 30 0 594 104 0 0 chr6 9829149 9829245 -172585997 + (GA)n Simple_repeat Simple_repeat 2 97 0 477 301 151 66 chr6 9829294 9829858 -172585384 - L2 LINE L2 -644 2670 2059 6452 91 10 4 chr6 9831566 9832971 -172582271 + L1PA10 LINE L1 4751 6160 -8 529 159 0 0 chr6 9833075 9833163 -172582079 + AluJ/FLAM SINE Alu 1 88 -224 207 0 0 0 chr6 9833178 9833201 -172582041 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 445 363 41 14 chr6 9833902 9834197 -172581045 - LTR16A LTR ERVL -78 372 70 314 315 112 14 chr6 9834291 9834434 -172580808 - MLT1K LTR MaLR -109 479 323 255 152 0 0 chr6 9835256 9835302 -172579940 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 198 307 173 0 chr6 9835715 9835790 -172579452 + L2 LINE L2 3160 3247 -25 2175 121 3 0 chr6 9835874 9836181 -172579061 - AluSq SINE Alu -5 308 1 341 246 0 0 chr6 9836923 9836988 -172578254 - MER91B DNA MER1_type -125 65 1 2111 169 83 14 chr6 9837538 9837969 -172577273 + LOR1b LTR ERV1 1 461 0 473 264 68 20 chr6 9837981 9838129 -172577113 - MER5B DNA MER1_type 0 178 24 295 233 126 10 chr6 9841151 9841254 -172573988 - MER94 DNA DNA -13 121 7 22 0 0 0 chr6 9842330 9842352 -172572890 + AT_rich Low_complexity Low_complexity 1 22 0 396 346 56 45 chr6 9843268 9843478 -172571764 - L2 LINE L2 0 3272 3057 411 68 0 0 chr6 9843478 9843537 -172571705 + (TG)n Simple_repeat Simple_repeat 1 59 0 396 346 56 45 chr6 9843537 9843592 -172571650 - L2 LINE L2 -215 3057 3004 280 302 0 65 chr6 9843802 9843941 -172571301 + Charlie8 DNA MER1_type 75 204 -2213 365 82 0 16 chr6 9845310 9845371 -172569871 - L1PA6 LINE L1 -1 6153 6094 492 130 0 0 chr6 9846481 9846550 -172568692 - AluJo SINE Alu -37 275 207 * 653 191 0 0 chr6 9846548 9846658 -172568584 - AluJo SINE Alu -192 120 11 237 310 82 32 chr6 9847069 9847350 -172567892 + L1ME LINE L1 5480 5774 -347 2216 128 0 0 chr6 9847609 9847915 -172567327 + AluSx SINE Alu 1 306 -6 743 360 50 38 chr6 9847989 9848863 -172566379 - HERV16 LTR ERVL -3750 1246 362 2394 94 0 0 chr6 9848879 9849188 -172566054 - AluSc SINE Alu 0 309 1 917 250 89 44 chr6 9849488 9849804 -172565438 - LTR16C LTR ERVL -6 485 156 410 94 16 0 chr6 9850543 9850607 -172564635 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 210 325 138 55 chr6 9852707 9852800 -172562442 + L2 LINE L2 2271 2355 -959 2831 3 0 3 chr6 9852800 9853110 -172562132 - AluYa5 SINE Alu -2 309 1 210 325 138 55 chr6 9853110 9853493 -172561749 + L2 LINE L2 2355 2787 -527 235 290 0 16 chr6 9853613 9853675 -172561567 + MER5A DNA MER1_type 129 189 0 459 189 22 11 chr6 9853683 9853773 -172561469 - MER5B DNA MER1_type 0 178 88 346 234 0 65 chr6 9853774 9853898 -172561344 + L1ME1 LINE L1 5083 5198 -948 2665 221 28 64 chr6 9853922 9854736 -172560506 + L1ME1 LINE L1 5377 6161 -5 2103 106 0 14 chr6 9854757 9855049 -172560193 + AluSc SINE Alu 1 288 -21 202 319 77 66 chr6 9855794 9856067 -172559175 + L2 LINE L2 2426 2701 -613 4300 149 90 24 chr6 9856087 9856934 -172558308 - MER4D LTR ERV1 0 903 1 2251 104 3 0 chr6 9857158 9857467 -172557775 + AluSq SINE Alu 4 313 0 450 321 29 43 chr6 9857520 9857729 -172557513 - MIR SINE MIR -46 216 11 1191 297 74 28 chr6 9857734 9858313 -172556929 - MER20B DNA MER1_type -3 780 175 557 103 0 5 chr6 9858390 9858473 -172556769 - Tigger4(Zombi) DNA MER2_type 0 2731 3 380 179 83 0 chr6 9858473 9858557 -172556685 - MER20B DNA MER1_type -680 103 13 2292 48 48 10 chr6 9859261 9859550 -172555692 + AluY SINE Alu 1 300 -11 1245 248 52 22 chr6 9859566 9859969 -172555273 + MER66A LTR ERV1 43 457 -21 223 343 48 18 chr6 9859974 9860140 -172555102 - MIR SINE MIR -84 178 8 257 356 149 16 chr6 9860606 9860800 -172554442 - MIR SINE MIR -21 241 22 202 254 109 0 chr6 9861126 9861181 -172554061 + MIR SINE MIR 191 251 -11 180 77 0 0 chr6 9862397 9862423 -172552819 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4019 87 5 7 chr6 9863026 9863581 -172551661 + MER41A LTR ERV1 1 554 0 2196 108 0 52 chr6 9864030 9864355 -172550887 - AluSp SINE Alu -2 311 4 2064 178 14 0 chr6 9865112 9865472 -172549770 - MLT1A1 LTR MaLR 0 365 1 881 217 22 0 chr6 9865683 9865867 -172549375 - MER5A DNA MER1_type 0 189 2 251 317 41 32 chr6 9866028 9866151 -172549091 + MIR SINE MIR 31 154 -108 191 270 131 66 chr6 9866222 9866359 -172548883 - MIR SINE MIR -13 249 104 24 32 0 0 chr6 9866702 9866733 -172548509 + AT_rich Low_complexity Low_complexity 1 31 0 622 137 35 13 chr6 9867229 9867456 -172547786 + (TA)n Simple_repeat Simple_repeat 1 232 0 259 269 67 42 chr6 9868858 9868977 -172546265 + L2 LINE L2 3180 3301 -12 898 168 69 108 chr6 9869043 9869157 -172546085 - MER33 DNA MER1_type -2263 322 205 1976 113 39 0 chr6 9869157 9869440 -172545802 - AluSx SINE Alu -18 294 1 898 168 69 108 chr6 9869440 9869659 -172545583 - MER33 DNA MER1_type -2380 205 2 470 272 95 6 chr6 9870043 9870201 -172545041 + MIR SINE MIR 91 262 0 2076 36 0 0 chr6 9870810 9871061 -172544181 - L1PA5 LINE L1 -1218 4928 4678 7446 33 0 1 chr6 9871062 9872283 -172542959 + L1PA5 LINE L1 4951 6170 0 2039 139 7 7 chr6 9872937 9873247 -172541995 - AluSx SINE Alu -2 310 1 356 242 6 19 chr6 9873331 9873488 -172541754 + (TA)n Simple_repeat Simple_repeat 2 156 0 1091 135 0 34 chr6 9873726 9873904 -172541338 - AluJb SINE Alu -12 300 129 770 217 19 14 chr6 9873913 9874125 -172541117 - MER33 DNA MER1_type -111 213 1 217 184 82 0 chr6 9875649 9875698 -172539544 + L2 LINE L2 3261 3313 0 42 95 0 0 chr6 9875773 9875899 -172539343 + AT_rich Low_complexity Low_complexity 1 126 0 1693 150 17 81 chr6 9876741 9877148 -172538094 + L1MA8 LINE L1 5911 6291 0 345 197 0 0 chr6 9877786 9877857 -172537385 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 2435 145 47 0 chr6 9878652 9879059 -172536183 - MSTB LTR MaLR 0 426 1 233 270 61 68 chr6 9879806 9879954 -172535288 - MIR SINE MIR -21 241 95 221 196 36 0 chr6 9881451 9881507 -172533735 + (TG)n Simple_repeat Simple_repeat 1 58 0 544 249 150 47 chr6 9882417 9882526 -172532716 - MIR SINE MIR -24 238 142 2247 72 0 0 chr6 9882526 9882803 -172532439 + AluY SINE Alu 35 311 0 544 249 150 47 chr6 9882803 9882886 -172532356 - MIR SINE MIR -120 142 26 2363 63 0 31 chr6 9883085 9883402 -172531840 + AluY SINE Alu 1 307 -4 326 315 67 67 chr6 9883473 9883740 -172531502 + HAL1 LINE L1 1303 1569 -938 2552 173 16 10 chr6 9884345 9884849 -172530393 - L1MB1 LINE L1 -1 6167 5661 454 237 101 0 chr6 9885920 9886059 -172529183 + L1MC4 LINE L1 6459 6611 -1431 1828 270 121 7 chr6 9886100 9886689 -172528553 - MLT2F LTR ERVL -7 656 1 1588 252 93 6 chr6 9886702 9887242 -172528000 + L1MC4 LINE L1 7315 7901 -141 430 293 133 6 chr6 9887345 9887526 -172527716 - MIR SINE MIR -10 252 49 462 307 94 53 chr6 9888000 9888489 -172526753 + L1MC/D LINE L1 2110 2618 -3528 249 274 181 34 chr6 9888532 9888769 -172526473 + L1MC/D LINE L1 2678 2949 -3197 916 196 0 0 chr6 9889306 9889474 -172525768 + L1PA15 LINE L1 5998 6165 0 234 0 0 0 chr6 9889577 9889603 -172525639 + (A)n Simple_repeat Simple_repeat 1 26 0 482 181 7 22 chr6 9889729 9889867 -172525375 + (TA)n Simple_repeat Simple_repeat 1 136 0 232 305 21 0 chr6 9889898 9889993 -172525249 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 229 295 100 14 chr6 9890072 9890282 -172524960 + L1MC/D LINE L1 4932 5159 -987 217 213 33 0 chr6 9890292 9890353 -172524889 + (TA)n Simple_repeat Simple_repeat 2 64 0 227 265 39 59 chr6 9890358 9890460 -172524782 + L1MC4 LINE L1 7942 8041 -1 572 269 81 24 chr6 9890464 9890850 -172524392 + L1MC/D LINE L1 5172 5579 -587 1109 267 16 0 chr6 9891730 9891977 -172523265 - MIR SINE MIR 0 262 12 1937 123 17 3 chr6 9892957 9893250 -172521992 - AluSx SINE Alu -15 297 1 298 287 16 93 chr6 9893267 9893396 -172521846 + L2 LINE L2 3139 3257 -15 2112 125 3 3 chr6 9894197 9894510 -172520732 - AluSq SINE Alu 0 313 1 204 158 0 0 chr6 9894651 9894689 -172520553 + (TG)n Simple_repeat Simple_repeat 1 38 0 295 257 37 64 chr6 9894780 9894889 -172520353 + MIR SINE MIR 53 158 -104 230 304 98 69 chr6 9895166 9895370 -172519872 - MIR SINE MIR -50 212 3 265 304 13 13 chr6 9895696 9895775 -172519467 + L2 LINE L2 3227 3305 -8 1889 131 10 24 chr6 9896072 9896369 -172518873 - AluSx SINE Alu -19 293 1 338 330 34 1 chr6 9896992 9897161 -172518081 + MIR3 SINE MIR 3 178 -30 22 0 0 0 chr6 9898472 9898494 -172516748 + AT_rich Low_complexity Low_complexity 1 22 0 778 242 50 46 chr6 9899221 9899473 -172515769 + MIR SINE MIR 13 254 -8 296 197 13 0 chr6 9901569 9901645 -172513597 - L1ME LINE L1 -280 5841 5765 2121 172 52 2 chr6 9901988 9902396 -172512846 - MSTA LTR MaLR 0 428 1 790 322 82 40 chr6 9902810 9903387 -172511855 + L3 LINE CR1 976 1576 -1 1978 158 0 6 chr6 9903627 9903938 -172511304 - AluSg SINE Alu -1 309 1 824 348 109 44 chr6 9904050 9905365 -172509877 - L2 LINE L2 -182 3090 1701 2004 152 7 0 chr6 9906733 9907030 -172508212 - AluSx SINE Alu -11 301 3 29 47 0 0 chr6 9907149 9907192 -172508050 + AT_rich Low_complexity Low_complexity 1 43 0 186 417 0 0 chr6 9907365 9907425 -172507817 + L2 LINE L2 3127 3186 -86 1291 112 119 76 chr6 9907717 9907980 -172507262 + MLT2A1 LTR ERVL 129 408 -36 504 117 0 0 chr6 9907980 9908057 -172507185 + (TG)n Simple_repeat Simple_repeat 2 78 0 1291 112 119 76 chr6 9908057 9908096 -172507146 + MLT2A1 LTR ERVL 408 444 0 2476 78 0 0 chr6 9908110 9908443 -172506799 + HERVL LTR ERVL 3063 3395 -2259 12927 66 1 1 chr6 9908493 9910169 -172505073 + HERVL LTR ERVL 3393 5068 -586 5488 152 60 38 chr6 9910173 9911324 -172503918 - THE1C-int LTR MaLR -404 1176 1 2164 141 11 29 chr6 9911324 9911353 -172503889 - THE1C LTR MaLR 0 375 347 2161 203 71 68 chr6 9911353 9911984 -172503258 - LTR27 LTR ERV1 -2 634 2 2164 141 11 29 chr6 9911984 9912336 -172502906 - THE1C LTR MaLR -28 347 1 234 0 0 0 chr6 9912358 9912384 -172502858 + (CA)n Simple_repeat Simple_repeat 1 26 0 290 289 143 25 chr6 9915136 9915322 -172499920 - MIR SINE MIR -18 244 38 21 71 0 0 chr6 9915492 9915534 -172499708 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 9915660 9915681 -172499561 + AT_rich Low_complexity Low_complexity 1 21 0 2360 109 0 0 chr6 9915727 9916031 -172499211 + AluSq SINE Alu 1 304 -9 1140 244 86 44 chr6 9917177 9917576 -172497666 + Charlie4a DNA MER1_type 13 437 -1524 2070 127 3 3 chr6 9917576 9917868 -172497374 + AluSq SINE Alu 1 292 -21 1140 244 86 44 chr6 9917868 9917943 -172497299 + Charlie4a DNA MER1_type 437 507 -1 503 284 123 20 chr6 9918497 9918701 -172496541 + L2 LINE L2 3089 3313 0 209 224 17 17 chr6 9918705 9918763 -172496479 + GA-rich Low_complexity Low_complexity 4 61 0 181 154 39 77 chr6 9919542 9919594 -172495648 + L2 LINE L2 3263 3312 -1 22 35 0 0 chr6 9919754 9919783 -172495459 + AT_rich Low_complexity Low_complexity 1 29 0 219 306 8 81 chr6 9919955 9920079 -172495163 + MIR SINE MIR 118 232 -30 204 125 0 0 chr6 9920860 9920892 -172494350 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 270 0 0 0 chr6 9922682 9922712 -172492530 + (A)n Simple_repeat Simple_repeat 1 30 0 2266 92 3 10 chr6 9923899 9924202 -172491040 - AluSc SINE Alu -8 301 1 1798 201 120 30 chr6 9925354 9925740 -172489502 - MER70A LTR ERVL 0 472 41 1887 134 22 0 chr6 9925740 9926017 -172489225 + AluSx SINE Alu 17 299 -13 1798 201 120 30 chr6 9926017 9926063 -172489179 - MER70A LTR ERVL -431 41 1 1027 169 6 6 chr6 9926678 9926855 -172488387 + AluJo SINE Alu 123 299 -13 254 209 104 0 chr6 9927143 9927277 -172487965 + (CTATA)n Simple_repeat Simple_repeat 3 150 0 568 58 31 79 chr6 9927284 9927766 -172487476 + (TA)n Simple_repeat Simple_repeat 1 458 0 23 0 0 0 chr6 9927801 9927824 -172487418 + AT_rich Low_complexity Low_complexity 1 23 0 241 287 50 69 chr6 9927876 9927977 -172487265 - MER5A DNA MER1_type -3 186 88 387 206 35 106 chr6 9928812 9928890 -172486352 + MER94 DNA DNA 1 66 -68 1867 154 7 3 chr6 9928890 9929182 -172486060 + AluJb SINE Alu 6 298 -14 387 206 35 106 chr6 9929182 9929244 -172485998 + MER94 DNA DNA 66 131 -3 291 253 107 96 chr6 9930458 9930557 -172484685 - HAL1 LINE L1 -96 2411 2315 5771 57 0 3 chr6 9930557 9931279 -172483963 + L1PA6 LINE L1 5430 6149 -5 291 253 107 96 chr6 9931279 9931740 -172483502 - HAL1 LINE L1 -192 2315 1845 361 319 18 24 chr6 9931772 9931938 -172483304 - L1MEd LINE L1 -5000 1119 955 1859 89 4 0 chr6 9931955 9932190 -172483052 + AluSq SINE Alu 1 236 -77 2370 109 0 6 chr6 9933024 9933337 -172481905 - AluSx SINE Alu -1 311 1 293 288 31 75 chr6 9934846 9934887 -172480355 + MIR SINE MIR 33 74 -188 2140 181 65 16 chr6 9934887 9935330 -172479912 - MLT1C LTR MaLR -2 465 1 293 288 31 75 chr6 9935330 9935448 -172479794 + MIR SINE MIR 74 185 -77 1914 127 7 4 chr6 9935698 9935974 -172479268 + AluSc SINE Alu 1 277 -32 1753 167 51 3 chr6 9936618 9936912 -172478330 + AluJb SINE Alu 1 308 -4 213 225 0 0 chr6 9938835 9938875 -172476367 - L3b LINE CR1 -9 1574 1535 298 319 35 0 chr6 9939864 9939977 -172475265 - L2 LINE L2 -15 3298 3182 652 345 131 31 chr6 9940092 9941073 -172474169 - L2 LINE L2 -352 2962 1884 262 333 83 35 chr6 9941097 9941241 -172474001 - MIR3 SINE MIR -15 193 43 348 304 107 39 chr6 9943247 9943527 -172471715 - L1ME4a LINE L1 0 6121 5823 801 210 81 0 chr6 9943548 9943734 -172471508 + MER58A DNA MER1_type 7 207 -17 272 260 39 0 chr6 9943801 9943878 -172471364 + MLT1J2 LTR MaLR 97 176 -274 23 33 0 0 chr6 9944002 9944032 -172471210 + AT_rich Low_complexity Low_complexity 1 30 0 268 250 0 65 chr6 9944126 9944250 -172470992 - L1M4 LINE L1 -3155 2991 2876 751 353 70 31 chr6 9944924 9945519 -172469723 - L2 LINE L2 -223 3090 2468 340 333 91 37 chr6 9945581 9945824 -172469418 + MLT1I LTR MaLR 96 351 -58 21 57 0 0 chr6 9946087 9946122 -172469120 + AT_rich Low_complexity Low_complexity 1 35 0 7548 27 3 0 chr6 9946759 9948177 -172467065 + L1PA4 LINE L1 4729 6150 -5 618 247 136 42 chr6 9948181 9948489 -172466753 - MSTD LTR MaLR -59 337 1 3120 301 78 14 chr6 9948502 9949661 -172465581 - L2 LINE L2 -1120 2194 961 237 272 96 29 chr6 9950039 9950175 -172465067 - L1ME4a LINE L1 -8 6113 5969 249 281 97 0 chr6 9950195 9950309 -172464933 - L1ME4a LINE L1 -199 5922 5798 242 233 76 23 chr6 9950708 9950880 -172464362 + L1M4 LINE L1 5118 5298 -848 2273 81 0 0 chr6 9951141 9951424 -172463818 + AluY SINE Alu 1 283 -28 283 240 10 39 chr6 9951455 9951559 -172463683 + CT-rich Low_complexity Low_complexity 3 103 0 418 282 45 0 chr6 9952102 9952212 -172463030 - MIR SINE MIR -147 115 1 186 167 0 0 chr6 9952213 9952249 -172462993 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 207 344 0 42 chr6 9952893 9952989 -172462253 + L3 LINE CR1 1437 1528 -49 349 213 19 9 chr6 9953001 9953109 -172462133 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 23 54 0 0 chr6 9953519 9953556 -172461686 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr6 9953828 9953858 -172461384 + AT_rich Low_complexity Low_complexity 1 30 0 485 279 29 7 chr6 9954792 9954932 -172460310 - L2 LINE L2 0 3313 3171 1981 79 61 11 chr6 9955574 9955851 -172459391 - AluSc SINE Alu -18 291 1 321 43 43 0 chr6 9958070 9958116 -172457126 - L1PA7 LINE L1 0 6154 6107 1761 148 10 21 chr6 9958578 9958869 -172456373 - AluJo SINE Alu -8 304 17 1587 167 42 17 chr6 9959761 9960048 -172455194 - AluJb SINE Alu -16 296 3 312 193 73 73 chr6 9960685 9960794 -172454448 + L1M4 LINE L1 8 116 -6426 26 0 0 0 chr6 9962316 9962342 -172452900 + AT_rich Low_complexity Low_complexity 1 26 0 186 191 0 0 chr6 9962547 9962589 -172452653 + (TA)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr6 9962994 9963022 -172452220 + AT_rich Low_complexity Low_complexity 1 28 0 30 89 0 0 chr6 9963210 9963289 -172451953 + AT_rich Low_complexity Low_complexity 1 79 0 253 271 104 21 chr6 9965257 9965353 -172449889 - MIR3 SINE MIR -96 112 9 370 244 50 50 chr6 9967283 9967443 -172447799 - MIR SINE MIR -50 212 53 294 125 0 0 chr6 9968840 9968888 -172446354 + (CA)n Simple_repeat Simple_repeat 1 48 0 1537 139 0 34 chr6 9971174 9971411 -172443831 - AluJb SINE Alu -21 291 63 2265 110 0 0 chr6 9972110 9972411 -172442831 - AluSq SINE Alu -10 303 3 267 103 0 0 chr6 9972592 9972631 -172442611 + (CA)n Simple_repeat Simple_repeat 2 40 0 454 193 57 0 chr6 9972656 9972744 -172442498 - MIR SINE MIR -92 170 78 2147 109 26 0 chr6 9973796 9974099 -172441143 - AluSq SINE Alu -2 311 1 407 67 0 17 chr6 9974312 9974372 -172440870 + (GAA)n Simple_repeat Simple_repeat 1 59 0 23 54 0 0 chr6 9975763 9975800 -172439442 + AT_rich Low_complexity Low_complexity 1 37 0 2248 86 40 7 chr6 9976476 9976777 -172438465 - AluSq SINE Alu -2 311 1 2498 57 0 0 chr6 9977101 9977400 -172437842 - AluY SINE Alu -12 299 1 2291 123 0 0 chr6 9977445 9977755 -172437487 + AluSx SINE Alu 1 310 -2 2173 98 0 38 chr6 9978264 9978580 -172436662 + AluSx SINE Alu 1 304 -8 318 303 151 18 chr6 9979223 9979441 -172435801 + L2 LINE L2 2973 3219 -94 2143 112 0 0 chr6 9980188 9980464 -172434778 + AluSx SINE Alu 1 276 -36 204 40 0 0 chr6 9980471 9980496 -172434746 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 717 193 0 0 chr6 9980602 9980721 -172434521 + FLAM_C SINE Alu 1 119 -24 198 103 0 0 chr6 9980721 9980750 -172434492 + (T)n Simple_repeat Simple_repeat 1 29 0 207 100 0 0 chr6 9981375 9981405 -172433837 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 529 302 133 51 chr6 9981410 9981741 -172433501 - L2 LINE L2 -18 3295 2938 2717 168 24 20 chr6 9981758 9982263 -172432979 + MER44D DNA MER2_type 5 566 -39 274 301 33 59 chr6 9982265 9982418 -172432824 - L2 LINE L2 -395 2919 2771 1466 181 4 0 chr6 9982422 9982670 -172432572 + MLT1C LTR MaLR 219 467 0 2871 182 46 14 chr6 9983038 9983627 -172431615 - L1MA9 LINE L1 -313 5999 5392 2855 224 31 9 chr6 9983732 9984179 -172431063 - L1MA9 LINE L1 -2952 3194 2723 2756 217 70 20 chr6 9984179 9984865 -172430377 - MER72 LTR ERV1 -2 720 1 2855 224 31 9 chr6 9984865 9985159 -172430083 - L1MA9 LINE L1 -3423 2723 2437 236 313 145 48 chr6 9985165 9985475 -172429767 + L1ME4a LINE L1 557 896 -5929 1287 196 156 19 chr6 9985592 9985965 -172429277 + MSTB LTR MaLR 1 424 -2 5780 163 25 57 chr6 9985969 9986014 -172429228 + MSTB-int LTR MaLR 3 48 -1532 1872 132 50 4 chr6 9986014 9986294 -172428948 + AluSp SINE Alu 2 294 -19 5780 163 25 57 chr6 9986294 9987411 -172427831 + MSTB-int LTR MaLR 48 1128 -452 1005 287 36 47 chr6 9987696 9988502 -172426740 + L1ME4a LINE L1 1082 1918 -4726 25 75 0 0 chr6 9988599 9988652 -172426590 + AT_rich Low_complexity Low_complexity 1 53 0 203 316 63 42 chr6 9988762 9988811 -172426431 + MIR3 SINE MIR 94 140 -68 2018 147 31 6 chr6 9988811 9989166 -172426076 + MER47A DNA MER2_type 1 364 -2 203 316 63 42 chr6 9989166 9989211 -172426031 + MIR3 SINE MIR 140 190 -18 252 226 0 32 chr6 9995733 9995795 -172419447 - MIR SINE MIR 0 262 203 2491 84 3 0 chr6 9996528 9996836 -172418406 - AluY SINE Alu 0 311 3 462 281 77 77 chr6 9996845 9997204 -172418038 + L1ME4a LINE L1 3186 3547 -3097 2029 139 0 7 chr6 9997204 9997507 -172417735 + AluSg SINE Alu 1 301 -9 462 281 77 77 chr6 9997507 9997578 -172417664 + L1ME4a LINE L1 3546 3616 -3028 326 376 39 55 chr6 9998801 9999125 -172416117 + L1ME4a LINE L1 4132 4446 -2198 1902 107 13 60 chr6 9999125 9999459 -172415783 + AluSx SINE Alu 2 321 0 326 376 39 55 chr6 9999459 9999702 -172415540 + L1ME4a LINE L1 4446 4691 -1953 398 252 60 33 chr6 10000506 10000657 -172414585 - L2 LINE L2 -1012 2302 2148 290 232 21 0 chr6 10000835 10000930 -172414312 + (TATG)n Simple_repeat Simple_repeat 4 100 0 587 308 94 42 chr6 10001366 10001847 -172413395 + L1ME4a LINE L1 5853 6358 -261 662 277 71 20 chr6 10002027 10002280 -172412962 + L2 LINE L2 2080 2345 -969 289 193 48 36 chr6 10002317 10002400 -172412842 + L1ME4a LINE L1 6516 6599 -20 502 282 122 65 chr6 10004231 10004632 -172410610 + L2 LINE L2 2080 2503 -811 824 292 79 22 chr6 10004938 10005434 -172409808 - L1MDb LINE L1 -5113 1296 773 2286 199 77 66 chr6 10005746 10006379 -172408863 - MLT1E1 LTR MaLR -14 640 1 758 271 128 8 chr6 10006379 10006645 -172408597 - L1ME1 LINE L1 -266 5900 5603 316 352 11 0 chr6 10006665 10006753 -172408489 + MIR SINE MIR 20 108 -154 225 180 0 0 chr6 10007198 10007248 -172407994 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 21 36 0 0 chr6 10008682 10008710 -172406532 + AT_rich Low_complexity Low_complexity 1 28 0 966 162 0 0 chr6 10008711 10008859 -172406383 - AluSg/x SINE Alu -29 283 136 28 29 0 0 chr6 10008894 10008929 -172406313 + AT_rich Low_complexity Low_complexity 1 35 0 199 352 108 17 chr6 10009047 10009223 -172406019 + MIR SINE MIR 21 212 -50 2243 139 90 55 chr6 10009249 10009718 -172405524 - LTR12 LTR ERV1 -229 485 1 23 0 0 0 chr6 10010122 10010145 -172405097 + AT_rich Low_complexity Low_complexity 1 23 0 9938 194 22 28 chr6 10010683 10012956 -172402286 - L1 LINE L1 -773 5373 3115 536 207 7 15 chr6 10017637 10017772 -172397470 + L1MB7 LINE L1 6039 6172 -12 22 70 0 0 chr6 10018535 10018578 -172396664 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 10019950 10019971 -172395271 + AT_rich Low_complexity Low_complexity 1 21 0 358 296 92 0 chr6 10020694 10020836 -172394406 - L1ME LINE L1 -440 5681 5527 346 283 22 36 chr6 10021218 10021356 -172393886 - HAL1b LINE L1 -860 488 353 443 259 22 7 chr6 10021423 10021562 -172393680 + L1ME4a LINE L1 5772 5912 -209 213 65 0 0 chr6 10022074 10022105 -172393137 + (T)n Simple_repeat Simple_repeat 1 31 0 2239 103 3 0 chr6 10022476 10022768 -172392474 - AluSq SINE Alu -18 295 3 2151 113 26 47 chr6 10023032 10023413 -172391829 + THE1C LTR MaLR 3 375 0 439 260 73 0 chr6 10023702 10023825 -172391417 + MIR SINE MIR 100 231 -31 2162 113 0 0 chr6 10024425 10024718 -172390524 + AluSx SINE Alu 1 293 -19 180 176 0 0 chr6 10025451 10025485 -172389757 + (TA)n Simple_repeat Simple_repeat 2 35 0 5319 86 97 1 chr6 10026593 10027345 -172387897 + LTR12 LTR ERV1 1 824 -2 40 0 0 0 chr6 10031877 10031917 -172383325 + AT_rich Low_complexity Low_complexity 1 40 0 1685 82 13 0 chr6 10031933 10032166 -172383076 + L1MA1 LINE L1 5725 5960 -342 27 29 0 0 chr6 10032511 10032545 -172382697 + AT_rich Low_complexity Low_complexity 1 34 0 191 337 174 0 chr6 10033106 10033204 -172382038 - MIR SINE MIR -122 140 26 2148 129 0 0 chr6 10033216 10033526 -172381716 - AluSg SINE Alu 0 310 1 198 0 0 0 chr6 10034235 10034257 -172380985 + (TTA)n Simple_repeat Simple_repeat 3 24 0 23 0 0 0 chr6 10034403 10034426 -172380816 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr6 10034889 10034921 -172380321 + (TG)n Simple_repeat Simple_repeat 1 32 0 2130 104 0 4 chr6 10034955 10035259 -172379983 + AluSg SINE Alu 1 303 0 1897 192 78 116 chr6 10036686 10037442 -172377800 - LTR8A LTR ERV1 0 727 1 261 182 0 0 chr6 10037462 10037517 -172377725 + CT-rich Low_complexity Low_complexity 2 56 0 203 389 23 0 chr6 10037525 10037656 -172377586 - L2 LINE L2 -879 2435 2302 393 305 170 5 chr6 10037838 10038061 -172377181 - MIR SINE MIR 0 262 3 4409 193 19 15 chr6 10038155 10038927 -172376315 - L1MB2 LINE L1 -39 6132 5347 4926 148 77 39 chr6 10038927 10039959 -172375283 - MER11C LTR ERVK 0 1071 1 4409 193 19 15 chr6 10039959 10040243 -172374999 - L1MB2 LINE L1 -824 5347 5066 209 380 10 0 chr6 10041302 10041402 -172373840 - L2 LINE L2 -5 3308 3208 28665 29 0 0 chr6 10042020 10046239 -172369003 + L1PA3 LINE L1 1937 6155 0 22 35 0 0 chr6 10046880 10046909 -172368333 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr6 10047678 10047722 -172367520 + AT_rich Low_complexity Low_complexity 1 44 0 1935 104 56 21 chr6 10047872 10048160 -172367082 + AluSx SINE Alu 1 298 -14 548 306 81 32 chr6 10048322 10048888 -172366354 + L1ME4a LINE L1 5525 6118 -3 6301 75 9 0 chr6 10051285 10052447 -172362795 - L1PA8A LINE L1 -3 6128 4962 9997 117 7 2 chr6 10052447 10053946 -172361296 + L1PA8A LINE L1 3443 4949 -1197 357 361 78 38 chr6 10054000 10054444 -172360798 + L2 LINE L2 2597 3060 -212 2813 170 24 19 chr6 10054532 10055073 -172360169 - L1MB1 LINE L1 -8 6160 5617 2266 178 4 13 chr6 10055073 10055533 -172359709 + L1MB2 LINE L1 4743 5198 -948 531 298 72 93 chr6 10057437 10057769 -172357473 - L2 LINE L2 -5 3308 2984 315 0 0 0 chr6 10057810 10057845 -172357397 + (TG)n Simple_repeat Simple_repeat 2 36 0 31 0 0 0 chr6 10057975 10058006 -172357236 + AT_rich Low_complexity Low_complexity 1 31 0 531 281 7 7 chr6 10058105 10058240 -172357002 - MIR SINE MIR -58 150 16 759 184 193 14 chr6 10058270 10058493 -172356749 + MSTD LTR MaLR 6 268 -128 2031 148 18 3 chr6 10058497 10058835 -172356407 - LTR3b LTR ERVK 0 500 158 604 186 17 0 chr6 10058853 10058971 -172356271 + MSTD LTR MaLR 274 393 -3 1002 212 5 0 chr6 10059582 10059766 -172355476 - MER5A DNA MER1_type -1 188 4 247 301 272 7 chr6 10059777 10059913 -172355329 - MER5A DNA MER1_type 0 189 18 310 257 54 16 chr6 10061086 10061184 -172354058 + MER5A DNA MER1_type 4 107 -82 1142 120 0 165 chr6 10061201 10061492 -172353750 - L1PB4 LINE L1 -2 6154 5912 207 300 33 0 chr6 10061494 10061554 -172353688 + MER5A DNA MER1_type 128 189 0 875 234 11 0 chr6 10062331 10062515 -172352727 + MER5A DNA MER1_type 1 186 -3 321 299 70 61 chr6 10062751 10062965 -172352277 + MIR SINE MIR 7 222 -40 2494 50 0 13 chr6 10064738 10065036 -172350206 - AluY SINE Alu -17 294 1 224 255 31 0 chr6 10065459 10065557 -172349685 + (TA)n Simple_repeat Simple_repeat 2 102 0 2769 195 22 36 chr6 10066611 10067001 -172348241 + L1MB2 LINE L1 5410 5787 -384 429 20 0 0 chr6 10067001 10067051 -172348191 + (TA)n Simple_repeat Simple_repeat 1 50 0 2769 195 22 36 chr6 10067051 10067356 -172347886 + L1MB2 LINE L1 5787 6095 -76 26 0 0 0 chr6 10067417 10067443 -172347799 + AT_rich Low_complexity Low_complexity 1 26 0 265 206 32 32 chr6 10067975 10068038 -172347204 + MIR SINE MIR 110 172 -90 180 0 0 0 chr6 10069142 10069162 -172346080 + (A)n Simple_repeat Simple_repeat 1 20 0 231 314 89 16 chr6 10070948 10071072 -172344170 - MIR3 SINE MIR -10 198 66 1548 221 37 68 chr6 10071306 10071823 -172343419 + MLT1D LTR MaLR 5 505 0 1676 173 97 13 chr6 10072592 10072985 -172342257 - MLT1C LTR MaLR -4 463 38 522 0 0 0 chr6 10072985 10073043 -172342199 + (TA)n Simple_repeat Simple_repeat 2 59 0 216 0 0 0 chr6 10073043 10073067 -172342175 + (T)n Simple_repeat Simple_repeat 1 24 0 200 320 58 86 chr6 10073201 10073492 -172341750 - L2 LINE L2 -811 2503 2221 355 321 65 10 chr6 10073783 10073981 -172341261 - MIR3 SINE MIR -2 260 45 424 277 34 25 chr6 10074140 10074259 -172340983 + L2 LINE L2 3153 3272 0 307 388 48 0 chr6 10075954 10076149 -172339093 + MIR SINE MIR 26 229 -33 308 369 9 9 chr6 10076956 10077067 -172338175 + MIR SINE MIR 4 114 -148 23 0 0 0 chr6 10077067 10077090 -172338152 + AT_rich Low_complexity Low_complexity 1 23 0 1007 168 7 0 chr6 10077106 10077261 -172337981 - AluSg/x SINE Alu -21 289 134 1089 196 5 5 chr6 10077368 10077567 -172337675 + AluJo SINE Alu 108 306 -6 261 267 0 0 chr6 10077576 10077636 -172337606 + MIR SINE MIR 195 254 -8 23 0 0 0 chr6 10078350 10078373 -172336869 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 10078431 10078460 -172336782 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr6 10078779 10078811 -172336431 + AT_rich Low_complexity Low_complexity 1 32 0 518 370 103 3 chr6 10078960 10079290 -172335952 - LTR16A LTR ERVL -31 419 57 425 300 125 17 chr6 10079994 10080291 -172334951 - ERVL LTR ERVL -922 4842 4514 5372 67 135 0 chr6 10080372 10081100 -172334142 + LTR12 LTR ERV1 1 826 0 13324 108 16 10 chr6 10081100 10084134 -172331108 + HERV9 LTR ERV1 1 2972 -5427 1324 107 10 0 chr6 10084133 10084330 -172330912 + HERV9 LTR ERV1 4756 4954 -3445 * 2093 173 85 97 chr6 10084326 10085235 -172330007 + Harlequin LTR ERV1 843 1740 -5156 * 5370 88 14 0 chr6 10085233 10085996 -172329246 + Harlequin LTR ERV1 7626 8399 0 4541 74 117 118 chr6 10085996 10086823 -172328419 + LTR12 LTR ERV1 1 826 0 789 322 73 41 chr6 10086832 10087688 -172327554 - ERVL LTR ERVL -1267 4387 3226 430 110 20 80 chr6 10087732 10087832 -172327410 + L1MA10 LINE L1 6228 6321 -13 273 269 205 29 chr6 10087834 10088005 -172327237 - L2 LINE L2 -163 3150 2950 2311 111 0 16 chr6 10088092 10088408 -172326834 + AluSx SINE Alu 2 312 0 306 0 0 0 chr6 10088409 10088443 -172326799 + (CA)n Simple_repeat Simple_repeat 2 35 0 1145 232 71 25 chr6 10088523 10088876 -172326366 + MLT1A2 LTR MaLR 6 374 0 24 32 0 0 chr6 10088948 10088979 -172326263 + AT_rich Low_complexity Low_complexity 1 31 0 252 256 116 0 chr6 10089104 10089190 -172326052 + MLT1L LTR MaLR 173 268 -347 246 116 0 0 chr6 10089904 10089947 -172325295 + (TG)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr6 10093761 10093781 -172321461 + (TTCTC)n Simple_repeat Simple_repeat 4 23 0 322 162 0 73 chr6 10094498 10094566 -172320676 + MLT2E LTR ERVL 20 82 -546 2463 58 0 10 chr6 10094665 10094960 -172320282 + AluY SINE Alu 1 292 -19 236 231 44 33 chr6 10095906 10095997 -172319245 + MLT1H LTR MaLR 408 499 -50 644 223 129 62 chr6 10098678 10098902 -172316340 + MLT2B2 LTR ERVL 198 436 -79 3057 124 47 0 chr6 10098932 10099446 -172315796 - L1PA15 LINE L1 -187 5978 5441 12952 207 8 5 chr6 10099575 10102540 -172312702 - L1PA15 LINE L1 -890 5256 2283 239 347 0 0 chr6 10104323 10104395 -172310847 + L2 LINE L2 3235 3306 -7 541 305 133 0 chr6 10105715 10105941 -172309301 - MIR SINE MIR 0 262 7 291 322 51 25 chr6 10106861 10106979 -172308263 - L2 LINE L2 -9 3263 3143 259 338 15 44 chr6 10106987 10107123 -172308119 + MIR SINE MIR 6 137 -71 276 30 0 0 chr6 10107124 10107157 -172308085 + (TAA)n Simple_repeat Simple_repeat 1 33 0 325 26 0 0 chr6 10107321 10107359 -172307883 + L1PA10 LINE L1 6119 6156 -12 587 312 67 13 chr6 10107567 10107992 -172307250 + L1ME LINE L1 5256 5660 -504 2174 121 0 3 chr6 10108145 10108451 -172306791 - AluSq SINE Alu -8 305 1 248 301 151 0 chr6 10108627 10108700 -172306542 + L2 LINE L2 3226 3309 -4 506 190 10 10 chr6 10110329 10110429 -172304813 + AluY SINE Alu 1 100 -210 2213 117 0 7 chr6 10110751 10111050 -172304192 + AluSx SINE Alu 1 297 -15 2290 87 0 0 chr6 10112081 10112370 -172302872 - AluSg SINE Alu -21 289 1 429 280 108 77 chr6 10112678 10113057 -172302185 - MLT1I LTR MaLR -1 408 18 207 243 0 29 chr6 10113336 10113406 -172301836 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 249 365 66 0 chr6 10113459 10113596 -172301646 + L3 LINE CR1 1343 1488 -89 264 250 54 11 chr6 10114796 10114888 -172300354 - MLT1L LTR MaLR 0 615 520 278 273 125 76 chr6 10114945 10115175 -172300067 - MLT1L LTR MaLR -198 417 111 1673 212 70 79 chr6 10115983 10116640 -172298602 + MLT1E1 LTR MaLR 4 654 0 1873 160 0 3 chr6 10116841 10117129 -172298113 + AluJo SINE Alu 1 287 -25 558 296 73 49 chr6 10117150 10117397 -172297845 - MIR SINE MIR 0 262 10 293 234 122 37 chr6 10117732 10117839 -172297403 + MIR SINE MIR 76 191 -71 460 342 6 6 chr6 10118947 10119105 -172296137 + MIR3 SINE MIR 50 207 -1 459 0 0 0 chr6 10119537 10119588 -172295654 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 336 335 30 37 chr6 10119795 10119959 -172295283 - MLT1K LTR MaLR -240 348 186 560 276 128 64 chr6 10121199 10121604 -172293638 - L2 LINE L2 0 3313 2883 369 329 72 46 chr6 10121698 10121935 -172293307 - MIR SINE MIR 0 262 20 466 204 134 14 chr6 10122017 10122159 -172293083 + MLT1G1 LTR MaLR 1 159 -436 353 227 30 21 chr6 10122154 10122266 -172292976 + MLT1G3 LTR MaLR 432 522 -8 * 3073 169 29 2 chr6 10122340 10122925 -172292317 + L1MA8 LINE L1 5691 6291 0 979 229 9 5 chr6 10123000 10123223 -172292019 - MER58A DNA MER1_type 0 224 1 2350 124 11 21 chr6 10123571 10123950 -172291292 - THE1C LTR MaLR 0 375 1 4174 130 49 49 chr6 10124667 10125420 -172289822 - LTR1 LTR ERV1 -1 784 32 21 57 0 0 chr6 10125890 10125925 -172289317 + AT_rich Low_complexity Low_complexity 1 35 0 227 200 36 18 chr6 10126412 10126467 -172288775 - MLT1K LTR MaLR 0 588 533 1871 171 83 3 chr6 10126957 10127319 -172287923 + MSTB LTR MaLR 36 426 0 262 169 79 0 chr6 10129240 10129329 -172285913 + (TA)n Simple_repeat Simple_repeat 2 97 0 2156 71 46 0 chr6 10130622 10130903 -172284339 - AluY SINE Alu -17 294 1 561 302 16 81 chr6 10131705 10131963 -172283279 + MIR SINE MIR 10 250 -12 783 150 42 163 chr6 10133495 10133735 -172281507 - MER20 DNA MER1_type 0 219 9 2016 120 17 13 chr6 10134176 10134476 -172280766 - AluSx SINE Alu -11 301 1 47 101 0 13 chr6 10134902 10135129 -172280113 + AT_rich Low_complexity Low_complexity 1 224 0 29 84 0 0 chr6 10135164 10135235 -172280007 + AT_rich Low_complexity Low_complexity 1 71 0 316 322 125 13 chr6 10135324 10135359 -172279883 - MIR SINE MIR -46 216 186 396 0 0 0 chr6 10135359 10135403 -172279839 + (CA)n Simple_repeat Simple_repeat 1 44 0 316 322 125 13 chr6 10135403 10135519 -172279723 - MIR SINE MIR -76 186 48 264 247 152 11 chr6 10135826 10136004 -172279238 - L1ME4a LINE L1 -177 5944 5742 234 191 16 32 chr6 10136140 10136203 -172279039 - L1M3 LINE L1 -627 5553 5492 333 0 0 0 chr6 10137200 10137237 -172278005 + (CA)n Simple_repeat Simple_repeat 2 38 0 36 23 0 0 chr6 10137324 10137367 -172277875 + AT_rich Low_complexity Low_complexity 1 43 0 1618 245 71 9 chr6 10137856 10138008 -172277234 - L1ME2 LINE L1 -10 6223 6082 288 0 0 0 chr6 10138008 10138040 -172277202 + (CA)n Simple_repeat Simple_repeat 2 33 0 1618 245 71 9 chr6 10138040 10138395 -172276847 - L1ME2 LINE L1 -151 6082 5681 2290 269 70 55 chr6 10138416 10140289 -172274953 - L1ME2 LINE L1 -3651 2564 656 240 331 67 11 chr6 10140901 10141079 -172274163 - L1ME2 LINE L1 -6202 194 7 21 0 0 0 chr6 10143628 10143649 -172271593 + AT_rich Low_complexity Low_complexity 1 21 0 2023 69 0 4 chr6 10143735 10143980 -172271262 - AluY SINE Alu -67 244 1 299 173 16 81 chr6 10144568 10144753 -172270489 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 196 311 136 0 chr6 10144824 10144927 -172270315 - MIR SINE MIR -111 151 35 1433 135 145 3 chr6 10145312 10145594 -172269648 + L1MB3 LINE L1 5856 6177 -6 1101 279 109 22 chr6 10145709 10146151 -172269091 + L1MDb LINE L1 158 779 -5764 1494 71 0 15 chr6 10146151 10146349 -172268893 - L1PA7 LINE L1 0 6154 5960 1101 279 109 22 chr6 10146349 10146509 -172268733 + L1MDb LINE L1 779 924 -5619 * 1713 241 100 13 chr6 10146486 10147116 -172268126 + L1MDb LINE L1 1812 2496 -4044 7494 231 52 68 chr6 10147132 10147859 -172267383 + L1MDb LINE L1 2651 3388 -3152 1002 66 0 0 chr6 10147859 10147980 -172267262 - AluSc SINE Alu -4 305 185 7494 231 52 68 chr6 10147980 10150174 -172265068 + L1MDb LINE L1 3388 5643 -897 509 125 0 0 chr6 10150699 10150779 -172264463 - MADE1 DNA Mariner 0 80 1 352 156 13 13 chr6 10152195 10152272 -172262970 + GA-rich Low_complexity Low_complexity 1 77 0 1023 119 11 6 chr6 10152274 10152451 -172262791 + (GAA)n Simple_repeat Simple_repeat 3 180 0 2304 83 3 0 chr6 10153543 10153831 -172261411 + AluSc SINE Alu 5 293 -16 403 178 20 10 chr6 10153932 10154033 -172261209 + GA-rich Low_complexity Low_complexity 2 103 0 2588 214 67 62 chr6 10154997 10156308 -172258934 + L1ME1 LINE L1 4825 6148 -18 200 259 36 107 chr6 10156393 10156505 -172258737 - L2 LINE L2 0 3313 3210 306 284 269 0 chr6 10156637 10156771 -172258471 + MER5A DNA MER1_type 11 180 -9 258 359 157 31 chr6 10156801 10157503 -172257739 + L2 LINE L2 1979 2768 -546 1903 168 21 0 chr6 10157801 10158128 -172257114 - MER44D DNA MER2_type -5 604 1 1656 150 12 0 chr6 10160404 10160657 -172254585 - AluJb SINE Alu -23 289 34 22 0 0 0 chr6 10160789 10160811 -172254431 + AT_rich Low_complexity Low_complexity 1 22 0 2344 90 3 0 chr6 10160850 10161150 -172254092 + AluSp SINE Alu 1 301 -12 2435 59 3 13 chr6 10161909 10162216 -172253026 + AluY SINE Alu 5 308 -3 279 325 86 75 chr6 10162296 10162342 -172252900 + L2 LINE L2 2257 2301 -1013 2161 123 0 7 chr6 10162342 10162650 -172252592 - AluSx SINE Alu -6 306 1 279 325 86 75 chr6 10162650 10163046 -172252196 + L2 LINE L2 2301 2704 -610 261 267 10 30 chr6 10163138 10163239 -172252003 + HAL1 LINE L1 1553 1651 -856 21 36 0 0 chr6 10163636 10163664 -172251578 + AT_rich Low_complexity Low_complexity 1 28 0 1313 166 4 7 chr6 10163791 10164062 -172251180 - L1MA4 LINE L1 -5 6295 6026 306 276 104 27 chr6 10164167 10164388 -172250854 + L1ME3A LINE L1 2290 2527 -3619 344 291 54 49 chr6 10164433 10164636 -172250606 + L1ME3A LINE L1 3112 3315 -2831 21 0 0 0 chr6 10164839 10164860 -172250382 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 10164983 10165006 -172250236 + (CAA)n Simple_repeat Simple_repeat 2 24 0 606 302 74 46 chr6 10165012 10165684 -172249558 + L1ME3A LINE L1 5274 5964 -206 25 51 0 0 chr6 10165908 10165947 -172249295 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 10166261 10166283 -172248959 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 10167076 10167100 -172248142 + AT_rich Low_complexity Low_complexity 1 24 0 42587 35 23 1 chr6 10167803 10173830 -172241412 + L1PA3 LINE L1 1 6155 0 2358 87 0 10 chr6 10174494 10174794 -172240448 - AluSq SINE Alu -16 297 1 485 276 8 16 chr6 10174982 10175109 -172240133 + MER5B DNA MER1_type 37 162 -16 197 176 0 20 chr6 10175363 10175414 -172239828 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1816 106 4 8 chr6 10175606 10175852 -172239390 - AluSx SINE Alu -13 299 55 751 125 8 0 chr6 10178811 10178931 -172236311 + L1PA14 LINE L1 6041 6161 0 230 293 0 13 chr6 10179859 10179934 -172235308 + L1MCc LINE L1 1130 1203 -5220 1014 293 51 15 chr6 10179960 10180642 -172234600 + L1MCc LINE L1 1263 2183 -4939 342 61 0 0 chr6 10181087 10181136 -172234106 + (CA)n Simple_repeat Simple_repeat 2 50 0 318 26 0 0 chr6 10181135 10181174 -172234068 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 207 258 65 32 chr6 10181368 10181430 -172233812 + MIR3 SINE MIR 135 198 -10 363 273 150 37 chr6 10181896 10182083 -172233159 - MIR SINE MIR -29 233 26 406 288 27 49 chr6 10182574 10182758 -172232484 - MER5A DNA MER1_type -7 182 3 266 297 65 43 chr6 10183519 10183657 -172231585 - MIR SINE MIR -50 212 72 452 332 108 66 chr6 10183704 10184291 -172230951 - L2 LINE L2 -1 3312 2709 340 274 132 0 chr6 10184938 10185044 -172230198 - L2 LINE L2 -5 3308 3189 284 255 124 28 chr6 10185371 10185516 -172229726 + MIR SINE MIR 92 250 -12 639 267 53 36 chr6 10185801 10186026 -172229216 - MIR SINE MIR -26 236 8 1378 191 4 0 chr6 10187394 10187650 -172227592 - MLT1B LTR MaLR 0 390 134 254 360 82 7 chr6 10187990 10188137 -172227105 - MIR SINE MIR -97 165 8 1502 211 72 55 chr6 10189801 10190260 -172224982 + MLT1C LTR MaLR 1 467 0 383 265 70 52 chr6 10190273 10190782 -172224460 - L1MEd LINE L1 -867 1623 920 678 151 0 0 chr6 10191023 10191142 -172224100 + L1MA4 LINE L1 6177 6295 -5 297 212 61 71 chr6 10191711 10191810 -172223432 - MIR SINE MIR -66 196 99 4287 73 10 7 chr6 10193023 10193599 -172221643 - L1PA11 LINE L1 -6 6168 5591 3646 152 20 9 chr6 10194318 10194977 -172220265 + L1PA15 LINE L1 5495 6160 -5 189 356 85 8 chr6 10195098 10195216 -172220026 - MIR SINE MIR -19 243 117 1508 215 33 44 chr6 10195424 10195875 -172219367 + MER39 LTR ERV1 258 703 -4 234 0 0 0 chr6 10197121 10197147 -172218095 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 558 0 0 0 chr6 10199370 10199432 -172215810 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 24 32 0 0 chr6 10201098 10201129 -172214113 + AT_rich Low_complexity Low_complexity 1 31 0 397 275 94 45 chr6 10201146 10201550 -172213692 - L1ME4a LINE L1 -76 6045 5622 883 211 38 24 chr6 10201770 10201979 -172213263 - MER20 DNA MER1_type -7 212 1 424 333 97 13 chr6 10201985 10202213 -172213029 - MIR SINE MIR 0 262 16 296 244 56 11 chr6 10203059 10203149 -172212093 + MER94 DNA DNA 10 103 -31 446 284 28 7 chr6 10203291 10203432 -172211810 - MLT1B LTR MaLR -371 171 28 382 341 0 0 chr6 10203646 10203775 -172211467 - MLT1F1-int LTR MaLR -487 884 756 796 295 75 17 chr6 10204070 10204525 -172210717 - MLT1F1-int LTR MaLR -770 601 1 1207 274 57 9 chr6 10204525 10204875 -172210367 - MLT1F1 LTR MaLR 0 567 201 344 288 61 49 chr6 10204926 10205089 -172210153 - L2 LINE L2 -899 2415 2251 390 339 48 12 chr6 10205187 10205352 -172209890 - MIR SINE MIR -56 206 36 539 286 8 0 chr6 10206448 10206581 -172208661 - MIR SINE MIR -5 257 124 717 312 67 35 chr6 10207741 10208202 -172207040 + L1M2 LINE L1 19 494 -6355 324 368 144 53 chr6 10208239 10208538 -172206704 + L1M2 LINE L1 630 955 -5894 270 331 29 20 chr6 10208990 10209235 -172206007 + L1PA15-16 LINE L1 1317 1563 -5286 391 217 0 0 chr6 10209235 10209318 -172205924 + L1PA15-16 LINE L1 1472 1554 -5295 * 4867 252 31 11 chr6 10209313 10211338 -172203904 + L1PA15-16 LINE L1 1336 3533 -3316 809 123 0 0 chr6 10211361 10211483 -172203759 + L1MA3 LINE L1 6184 6305 0 2128 221 23 8 chr6 10211530 10212047 -172203195 + L1PA15-16 LINE L1 2285 2809 -4040 258 363 71 0 chr6 10212824 10212937 -172202305 - MIR SINE MIR -98 164 44 1085 103 12 0 chr6 10213321 10213486 -172201756 - Tigger1 DNA MER2_type -494 1924 1758 2244 90 7 3 chr6 10213498 10213797 -172201445 - AluSq SINE Alu -13 300 1 1672 136 21 0 chr6 10213799 10214079 -172201163 + Tigger1 DNA MER2_type 1951 2236 -182 268 293 106 16 chr6 10214734 10214857 -172200385 - L2 LINE L2 -20 3293 3160 2035 153 0 7 chr6 10214993 10215293 -172199949 + AluSx SINE Alu 1 298 -14 209 266 125 0 chr6 10215460 10215524 -172199718 - L2 LINE L2 -2 3311 3240 * 308 298 175 72 chr6 10215501 10216550 -172198692 - L2 LINE L2 -544 2770 1613 438 341 62 6 chr6 10216552 10216877 -172198365 + L1MCc LINE L1 19 361 -6062 753 140 6 19 chr6 10216894 10217051 -172198191 + GA-rich Low_complexity Low_complexity 1 155 0 2200 106 33 0 chr6 10217061 10217363 -172197879 + AluSq SINE Alu 1 312 -1 291 157 0 0 chr6 10217373 10217424 -172197818 + GA-rich Low_complexity Low_complexity 2 52 0 773 301 71 38 chr6 10217428 10218170 -172197072 + L1MCc LINE L1 360 1525 -4898 858 259 58 24 chr6 10218193 10218606 -172196636 + L1MCc LINE L1 3489 3915 -3026 834 244 16 29 chr6 10218610 10218842 -172196400 + LTR52 LTR ERVL 1 231 -190 2245 134 116 10 chr6 10218842 10219229 -172196013 - MSTA LTR MaLR 0 428 1 6200 177 135 10 chr6 10219240 10220632 -172194610 - MSTA-int LTR MaLR -12 1568 3 2030 136 169 5 chr6 10220634 10221002 -172194240 - MSTA LTR MaLR 0 428 1 734 184 32 21 chr6 10221004 10221194 -172194048 + LTR52 LTR ERVL 230 421 0 304 195 143 0 chr6 10221194 10221271 -172193971 + L1MCc LINE L1 3921 4008 -2933 2158 133 10 0 chr6 10221309 10221617 -172193625 + AluSx SINE Alu 1 311 -1 394 309 55 24 chr6 10222257 10222422 -172192820 - MIR3 SINE MIR -6 202 33 2098 141 25 19 chr6 10223215 10223576 -172191666 + THE1B LTR MaLR 2 364 0 297 279 52 29 chr6 10223664 10223800 -172191442 + MIR SINE MIR 111 249 -13 244 298 305 8 chr6 10224040 10224171 -172191071 + MER5B DNA MER1_type 1 170 -8 430 299 64 13 chr6 10224275 10224509 -172190733 - L1MC5 LINE L1 -57 7904 7659 6282 88 0 3 chr6 10224528 10224648 -172190594 - L1PA8 LINE L1 0 6172 6053 229 26 53 0 chr6 10224648 10224686 -172190556 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 2025 99 4 0 chr6 10224686 10224949 -172190293 - AluSc SINE Alu -29 280 17 6282 88 0 3 chr6 10224949 10225949 -172189293 - L1PA8 LINE L1 -117 6055 5064 1166 102 0 0 chr6 10225949 10226125 -172189117 + L1PA8 LINE L1 4856 5031 -1115 2395 154 17 32 chr6 10226132 10226607 -172188635 - L1MC1 LINE L1 0 6333 5866 2331 186 71 18 chr6 10226631 10227615 -172187627 - L1MC1 LINE L1 -559 5785 4750 413 239 0 0 chr6 10228110 10228198 -172187044 + MIR SINE MIR 175 262 0 11967 46 18 2 chr6 10228230 10230470 -172184772 + L1PA5 LINE L1 3894 6153 -1 232 331 8 41 chr6 10230473 10230594 -172184648 - MER5A DNA MER1_type -35 154 38 387 60 0 0 chr6 10230849 10230899 -172184343 + (TG)n Simple_repeat Simple_repeat 1 50 0 29 28 0 0 chr6 10231009 10231045 -172184197 + AT_rich Low_complexity Low_complexity 1 36 0 240 86 0 0 chr6 10231315 10231350 -172183892 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 27 49 0 0 chr6 10231551 10231592 -172183650 + AT_rich Low_complexity Low_complexity 1 41 0 203 326 74 82 chr6 10231695 10231830 -172183412 + MIR SINE MIR 59 192 -70 201 94 0 0 chr6 10232317 10232349 -172182893 + (CA)n Simple_repeat Simple_repeat 2 33 0 1161 181 178 22 chr6 10233015 10233340 -172181902 + MLT1A2 LTR MaLR 1 467 0 717 284 87 79 chr6 10233752 10234021 -172181221 + L1MA7 LINE L1 2 267 -5083 5324 73 1 3 chr6 10234021 10234716 -172180526 - L1PA6 LINE L1 -11 6143 5450 717 284 87 79 chr6 10234716 10235044 -172180198 + L1MA7 LINE L1 267 627 -4723 1015 333 33 3 chr6 10235412 10235803 -172179439 + L1MA7 LINE L1 853 1255 -5026 2761 174 60 44 chr6 10235815 10236498 -172178744 + LTR8A LTR ERV1 34 727 0 1271 220 80 32 chr6 10236499 10237067 -172178175 + L1MA7 LINE L1 1250 1833 -4516 8579 196 21 8 chr6 10237080 10239110 -172176132 + L1MA7 LINE L1 2764 4819 -1531 1103 155 0 0 chr6 10239110 10239271 -172175971 + AluJb SINE Alu 138 298 -14 328 151 174 0 chr6 10239272 10239358 -172175884 + L1MA7 LINE L1 4811 4911 -1439 40102 57 6 1 chr6 10239376 10245501 -172169741 + L1PA5 LINE L1 11 6153 -1 2794 172 7 18 chr6 10245490 10246059 -172169183 + L1MA7 LINE L1 4901 5463 -887 * 3597 179 33 9 chr6 10246059 10246792 -172168450 + L1MA7 LINE L1 5744 6493 -2 21 0 0 0 chr6 10246792 10246813 -172168429 + AT_rich Low_complexity Low_complexity 1 21 0 2579 162 33 44 chr6 10246931 10247408 -172167834 + MLT2B2 LTR ERVL 1 473 -42 360 0 0 0 chr6 10247408 10247448 -172167794 + (TG)n Simple_repeat Simple_repeat 1 40 0 2579 162 33 44 chr6 10247448 10247489 -172167753 + MLT2B2 LTR ERVL 473 513 -2 690 256 115 0 chr6 10247702 10247893 -172167349 + MIR SINE MIR 49 261 -1 306 282 118 45 chr6 10248100 10248210 -172167032 - L2 LINE L2 0 3272 3155 3300 150 25 30 chr6 10248918 10249525 -172165717 + MER6A DNA MER2_type 1 604 -1 2166 104 13 26 chr6 10250400 10250708 -172164534 + AluSx SINE Alu 5 308 -4 21 36 0 0 chr6 10250731 10250759 -172164483 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr6 10251759 10251812 -172163430 + AT_rich Low_complexity Low_complexity 1 53 0 1762 156 46 38 chr6 10252150 10252522 -172162720 - THE1C LTR MaLR 0 375 1 207 272 0 0 chr6 10252996 10253121 -172162121 + (CA)n Simple_repeat Simple_repeat 2 126 0 522 236 64 17 chr6 10254003 10254196 -172161046 - MIR SINE MIR -60 202 2 2046 116 0 0 chr6 10254637 10254962 -172160280 + AluSg SINE Alu 6 330 0 2194 95 0 3 chr6 10255109 10255426 -172159816 - AluY SINE Alu 0 316 1 2006 138 7 0 chr6 10255429 10255718 -172159524 - AluSc SINE Alu -18 291 1 1241 207 113 51 chr6 10255873 10256308 -172158934 - MLT1C LTR MaLR 0 467 6 441 0 0 0 chr6 10256644 10256693 -172158549 + (CA)n Simple_repeat Simple_repeat 2 50 0 248 293 65 65 chr6 10258308 10258431 -172156811 + MIR SINE MIR 20 142 -66 1849 179 38 57 chr6 10258665 10259211 -172156031 + MLT2C2 LTR ERVL 1 464 0 377 231 43 17 chr6 10259371 10259488 -172155754 + MIR SINE MIR 133 252 -10 444 254 111 0 chr6 10259559 10259685 -172155557 - MIR SINE MIR -60 202 63 297 75 0 0 chr6 10261042 10261082 -172154160 + (CA)n Simple_repeat Simple_repeat 2 41 0 1503 167 28 4 chr6 10261676 10261928 -172153314 + AluJo SINE Alu 1 258 -54 2198 125 7 0 chr6 10262523 10262818 -172152424 - AluSx SINE Alu -15 297 1 31 68 0 0 chr6 10262830 10262889 -172152353 + AT_rich Low_complexity Low_complexity 1 59 0 241 97 69 0 chr6 10262898 10262970 -172152272 + (TA)n Simple_repeat Simple_repeat 1 77 0 329 308 47 37 chr6 10263327 10263434 -172151808 - L2 LINE L2 -14 3299 3192 1663 170 0 52 chr6 10263761 10264067 -172151175 + AluJb SINE Alu 1 290 -22 254 214 0 14 chr6 10266131 10266201 -172149041 + GA-rich Low_complexity Low_complexity 2 70 0 436 278 32 8 chr6 10267715 10267841 -172147401 + L2 LINE L2 3180 3308 -5 256 352 67 88 chr6 10268000 10268341 -172146901 - L2 LINE L2 -20 3252 2919 602 215 169 31 chr6 10268518 10268713 -172146529 - L2 LINE L2 0 3313 3092 2542 115 28 0 chr6 10270471 10270870 -172144372 - L1PA8 LINE L1 -3 6169 5760 22 0 0 0 chr6 10271393 10271415 -172143827 + AT_rich Low_complexity Low_complexity 1 22 0 1781 161 6 43 chr6 10271546 10271870 -172143372 - AluJo SINE Alu 0 312 1 21 36 0 0 chr6 10272835 10272863 -172142379 + AT_rich Low_complexity Low_complexity 1 28 0 1755 131 22 11 chr6 10273095 10273370 -172141872 + AluSx SINE Alu 35 312 0 218 71 0 48 chr6 10274231 10274273 -172140969 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 324 0 0 0 chr6 10275981 10276017 -172139225 + (CA)n Simple_repeat Simple_repeat 2 37 0 1946 148 0 20 chr6 10276160 10276457 -172138785 - AluSx SINE Alu -21 291 1 14610 133 18 6 chr6 10276478 10278868 -172136374 + Tigger1 DNA MER2_type 1 2418 0 282 348 0 11 chr6 10278926 10279018 -172136224 + L2 LINE L2 3180 3270 -2 254 238 0 16 chr6 10279648 10279711 -172135531 + LTR67 LTR ERVL 496 557 0 2283 108 0 0 chr6 10280018 10280323 -172134919 + AluSq SINE Alu 1 305 -8 358 122 0 122 chr6 10280442 10280516 -172134726 + FLAM SINE Alu 65 129 -4 5489 94 1 30 chr6 10280850 10281707 -172133535 + L1PA14 LINE L1 5326 6157 -4 1604 163 52 14 chr6 10282020 10282309 -172132933 + AluSq SINE Alu 1 300 -13 622 214 66 6 chr6 10283306 10283488 -172131754 + MER33 DNA MER1_type 34 226 -98 1614 168 0 22 chr6 10283563 10283837 -172131405 - AluJo SINE Alu -8 304 37 287 340 80 13 chr6 10284626 10284776 -172130466 + MIR SINE MIR 5 164 -98 509 264 117 78 chr6 10284779 10284833 -172130409 + MLT1J LTR MaLR 5 55 -456 2162 99 3 0 chr6 10284833 10285138 -172130104 + AluSq SINE Alu 1 306 0 509 264 117 78 chr6 10285138 10285415 -172129827 + MLT1J LTR MaLR 55 350 -161 12126 158 6 5 chr6 10285415 10288455 -172126787 + L1PA13 LINE L1 3115 6144 -19 200 191 64 138 chr6 10288562 10288656 -172126586 + MIR SINE MIR 176 262 0 219 146 0 0 chr6 10288702 10288743 -172126499 + (CA)n Simple_repeat Simple_repeat 2 42 0 23 33 0 0 chr6 10291402 10291432 -172123810 + AT_rich Low_complexity Low_complexity 1 30 0 2263 45 49 14 chr6 10291618 10291905 -172123337 + AluY SINE Alu 1 297 -14 2402 73 0 28 chr6 10291909 10292226 -172123016 + AluY SINE Alu 1 308 -3 21 36 0 0 chr6 10292959 10292987 -172122255 + AT_rich Low_complexity Low_complexity 1 28 0 638 161 54 0 chr6 10293170 10293300 -172121942 - L1MB1 LINE L1 0 6168 6032 28 0 0 0 chr6 10294774 10294802 -172120440 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr6 10294872 10294904 -172120338 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 23 0 0 0 chr6 10296895 10296918 -172118324 + AT_rich Low_complexity Low_complexity 1 23 0 1885 151 10 3 chr6 10297158 10297450 -172117792 + AluJo SINE Alu 11 304 -8 3910 152 91 26 chr6 10299044 10299514 -172115728 + pTR5 LTR ERV1 743 1181 -1257 192 77 0 0 chr6 10299514 10299540 -172115702 + (CCCCCG)n Simple_repeat Simple_repeat 2 27 0 3910 152 91 26 chr6 10299540 10300372 -172114870 + pTR5 LTR ERV1 1181 2438 0 1881 121 44 24 chr6 10300487 10300785 -172114457 + AluSx SINE Alu 1 304 -8 621 276 66 29 chr6 10301342 10301585 -172113657 + Charlie8 DNA MER1_type 23 274 -2143 287 302 86 26 chr6 10301607 10301723 -172113519 + L2 LINE L2 3190 3312 -1 328 235 0 0 chr6 10301926 10301994 -172113248 + Charlie8 DNA MER1_type 1350 1417 -1000 2482 69 0 0 chr6 10302233 10302536 -172112706 + AluY SINE Alu 1 303 -8 1781 289 122 33 chr6 10302636 10303050 -172112192 + L1MCc LINE L1 11 387 -6554 956 209 80 0 chr6 10303050 10303251 -172111991 + MER20 DNA MER1_type 3 219 0 1781 289 122 33 chr6 10303251 10303728 -172111514 + L1MCc LINE L1 387 820 -6121 2223 110 0 3 chr6 10303728 10304019 -172111223 + AluSc SINE Alu 1 290 -19 1781 289 122 33 chr6 10304019 10305105 -172110137 + L1MCc LINE L1 820 2171 -4770 2193 122 0 6 chr6 10305115 10305426 -172109816 + AluSx SINE Alu 1 309 -3 312 313 28 85 chr6 10305517 10305728 -172109514 + L1ME1 LINE L1 92 290 -6569 420 263 66 116 chr6 10305985 10306244 -172108998 + L1ME1 LINE L1 954 1199 -5656 897 243 13 75 chr6 10306298 10306673 -172108569 + L1ME1 LINE L1 1212 1563 -5296 28 79 0 0 chr6 10306680 10306743 -172108499 + AT_rich Low_complexity Low_complexity 1 63 0 345 212 112 39 chr6 10306745 10306924 -172108318 + L1ME1 LINE L1 5780 5971 -986 1260 264 74 42 chr6 10306924 10307425 -172107817 - MLT1E3 LTR MaLR -24 600 84 947 204 13 4 chr6 10307527 10307752 -172107490 + L1ME1 LINE L1 5988 6214 -743 1177 237 116 39 chr6 10307757 10308250 -172106992 + L1ME1 LINE L1 6435 6965 -12 29 90 0 0 chr6 10308537 10308615 -172106627 + AT_rich Low_complexity Low_complexity 1 78 0 315 224 47 0 chr6 10308645 10308730 -172106512 + MLT1C LTR MaLR 3 91 -376 329 250 69 17 chr6 10308736 10308884 -172106358 - MLT1E3 LTR MaLR -409 217 80 1711 168 45 17 chr6 10308918 10309276 -172105966 + MLT1C LTR MaLR 95 462 -5 2007 90 68 0 chr6 10309975 10310134 -172105108 - AluSc SINE Alu -11 298 151 216 0 0 0 chr6 10310134 10310158 -172105084 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2007 90 68 0 chr6 10310158 10310277 -172104965 - AluSc SINE Alu -158 151 1 1656 57 31 0 chr6 10310382 10310610 -172104632 - L1PA13 LINE L1 -2 6161 5927 6308 160 21 5 chr6 10310642 10311997 -172103245 - L1P4 LINE L1 -694 5474 4106 2551 151 15 6 chr6 10312005 10312474 -172102768 - L1PA16 LINE L1 -20 6146 5674 321 261 46 76 chr6 10312674 10312833 -172102409 - HAL1 LINE L1 -1242 1265 1103 2040 130 13 3 chr6 10312833 10313134 -172102108 - AluSx SINE Alu -8 304 1 321 261 46 76 chr6 10313134 10313410 -172101832 - HAL1 LINE L1 -1404 1103 843 1150 213 94 70 chr6 10313732 10314344 -172100898 - Charlie2 DNA MER1_type -7 2855 2222 357 225 93 16 chr6 10314344 10314473 -172100769 - MER91C DNA MER1_type -1 139 1 1150 213 94 70 chr6 10314473 10314563 -172100679 - Charlie2 DNA MER1_type -640 2222 2136 436 286 110 6 chr6 10314683 10314865 -172100377 - Charlie2 DNA MER1_type -2593 269 69 329 312 142 35 chr6 10316145 10316286 -172098956 - L2 LINE L2 -1 3271 3116 611 258 59 11 chr6 10316438 10316624 -172098618 - MIR SINE MIR -51 211 17 2033 141 92 8 chr6 10316636 10317027 -172098215 - MSTA LTR MaLR -4 424 1 374 189 0 0 chr6 10317854 10317928 -172097314 - MER5A DNA MER1_type -115 74 1 666 290 59 11 chr6 10317940 10318126 -172097116 + MIR3 SINE MIR 13 207 -1 2073 105 3 33 chr6 10318434 10318739 -172096503 + AluSg SINE Alu 1 296 -14 6600 48 7 0 chr6 10319895 10320716 -172094526 + L1PA5 LINE L1 5321 6147 -7 38 0 0 0 chr6 10320716 10320754 -172094488 + AT_rich Low_complexity Low_complexity 1 38 0 1087 292 64 7 chr6 10320756 10321211 -172094031 - L1ME LINE L1 -424 5746 5266 199 329 35 35 chr6 10321471 10321614 -172093628 + L3b LINE CR1 1102 1244 -339 822 271 248 34 chr6 10321616 10322079 -172093163 + L2 LINE L2 2450 2813 -500 201 39 0 0 chr6 10322079 10322105 -172093137 + (CA)n Simple_repeat Simple_repeat 2 27 0 822 271 248 34 chr6 10322105 10322333 -172092909 + L2 LINE L2 2813 3312 -1 249 246 0 0 chr6 10322418 10322479 -172092763 + GA-rich Low_complexity Low_complexity 2 62 0 1344 101 0 0 chr6 10322919 10323097 -172092145 - AluSg SINE Alu -14 298 121 40561 32 25 2 chr6 10323097 10329102 -172086140 - L1PA2 LINE L1 -7 6148 6 737 128 18 0 chr6 10329102 10329211 -172086031 - AluSg SINE Alu -170 140 30 1720 189 3 19 chr6 10329322 10329629 -172085613 - AluJb SINE Alu -10 302 1 310 196 98 23 chr6 10330266 10330399 -172084843 - L1MC4 LINE L1 -2 8040 7898 591 243 171 0 chr6 10331014 10331166 -172084076 - MER5B DNA MER1_type 0 178 1 418 243 223 14 chr6 10331173 10331321 -172083921 - MER5A DNA MER1_type -7 182 4 1223 235 65 63 chr6 10331486 10331929 -172083313 - MER21B LTR ERV1 -57 806 363 1095 186 4 59 chr6 10332015 10332251 -172082991 - MER21B LTR ERV1 -539 324 102 239 214 0 18 chr6 10332332 10332388 -172082854 - MER21B LTR ERV1 -797 66 12 821 204 68 0 chr6 10332439 10332615 -172082627 + MER5A DNA MER1_type 2 189 0 393 266 143 26 chr6 10332682 10332836 -172082406 + MER5B DNA MER1_type 1 172 -6 194 57 57 0 chr6 10334299 10334334 -172080908 + A-rich Low_complexity Low_complexity 4 40 0 362 303 59 16 chr6 10335868 10336012 -172079230 - MIR SINE MIR -42 166 15 23 0 0 0 chr6 10336263 10336286 -172078956 + AT_rich Low_complexity Low_complexity 1 23 0 210 143 0 0 chr6 10337210 10337245 -172077997 + (A)n Simple_repeat Simple_repeat 1 35 0 278 305 92 29 chr6 10337481 10337655 -172077587 - MIR SINE MIR -1 261 77 212 132 0 26 chr6 10338267 10338305 -172076937 + MIR SINE MIR 220 256 -6 824 209 74 0 chr6 10339873 10340036 -172075206 - MER45A DNA AcHobo 0 178 4 367 282 31 53 chr6 10340186 10340413 -172074829 - L1ME3A LINE L1 -303 5867 5646 293 273 41 2 chr6 10340399 10340594 -172074648 - L1MEc LINE L1 -3890 2650 2444 * 425 364 46 8 chr6 10340865 10341104 -172074138 - L1MEc LINE L1 -4579 2142 1895 412 287 73 10 chr6 10341261 10341550 -172073692 - L1MEc LINE L1 -4894 1636 1330 1981 105 0 0 chr6 10342138 10342395 -172072847 - AluSx SINE Alu -1 311 55 405 0 0 0 chr6 10342428 10342473 -172072769 + (TG)n Simple_repeat Simple_repeat 2 46 0 184 283 0 0 chr6 10343563 10343609 -172071633 + L2 LINE L2 3224 3269 -3 202 273 15 0 chr6 10343767 10343833 -172071409 + (CA)n Simple_repeat Simple_repeat 2 68 0 228 240 0 0 chr6 10343851 10343951 -172071291 + (CA)n Simple_repeat Simple_repeat 1 100 0 532 211 0 0 chr6 10345441 10345550 -172069692 + L1PB4 LINE L1 6040 6148 -8 472 162 0 0 chr6 10345664 10345738 -172069504 + AluS SINE Alu 1 74 -235 39 0 0 0 chr6 10345788 10345827 -172069415 + AT_rich Low_complexity Low_complexity 1 39 0 603 183 117 103 chr6 10346213 10346426 -172068816 - MER20 DNA MER1_type 0 219 4 216 0 0 0 chr6 10346857 10346881 -172068361 + (A)n Simple_repeat Simple_repeat 1 24 0 2722 246 70 11 chr6 10346892 10348134 -172067108 + L1ME1 LINE L1 4845 6166 0 456 19 0 0 chr6 10348355 10348408 -172066834 + (CA)n Simple_repeat Simple_repeat 2 54 0 226 143 24 0 chr6 10348416 10348458 -172066784 + GA-rich Low_complexity Low_complexity 2 44 0 204 263 11 32 chr6 10349352 10349447 -172065795 + A-rich Low_complexity Low_complexity 3 95 0 360 0 0 0 chr6 10349604 10349644 -172065598 + (CA)n Simple_repeat Simple_repeat 2 41 0 1652 191 26 37 chr6 10350270 10350548 -172064694 + MLT2B3 LTR ERVL 1 276 -278 2429 95 0 0 chr6 10350548 10350853 -172064389 + AluSg SINE Alu 1 305 -5 1652 191 26 37 chr6 10350853 10350925 -172064317 + MLT2B3 LTR ERVL 276 347 -207 317 202 202 0 chr6 10350917 10351001 -172064241 + MLT1E LTR MaLR 493 593 0 * 2349 137 11 3 chr6 10351632 10351991 -172063251 - THE1B LTR MaLR 0 364 3 1072 157 51 37 chr6 10352122 10352338 -172062904 - MER20 DNA MER1_type 0 219 1 1324 187 33 0 chr6 10352464 10352769 -172062473 + MER33 DNA MER1_type 10 324 0 21 0 0 0 chr6 10353178 10353199 -172062043 + AT_rich Low_complexity Low_complexity 1 21 0 304 150 44 35 chr6 10356638 10356751 -172058491 + (TA)n Simple_repeat Simple_repeat 2 115 0 966 199 39 0 chr6 10357575 10357756 -172057486 + MER5A DNA MER1_type 1 188 -1 814 136 7 57 chr6 10357954 10358094 -172057148 + FLAM_C SINE Alu 1 133 0 32 43 0 0 chr6 10358094 10358140 -172057102 + AT_rich Low_complexity Low_complexity 1 46 0 1029 58 0 0 chr6 10358203 10358324 -172056918 + AluY SINE Alu 174 294 -17 262 246 108 0 chr6 10358366 10358431 -172056811 + MIR SINE MIR 119 190 -72 3404 128 8 3 chr6 10358442 10359391 -172055851 - L1P4 LINE L1 -415 5746 4795 677 148 16 0 chr6 10359387 10359515 -172055727 + L1P4 LINE L1 4637 4766 -1380 * 23 54 0 0 chr6 10359668 10359705 -172055537 + AT_rich Low_complexity Low_complexity 1 37 0 1289 147 14 0 chr6 10360681 10360899 -172054343 + L1PA15 LINE L1 5938 6158 -7 450 143 13 0 chr6 10361106 10361183 -172054059 - MER116 DNA Mariner 0 80 3 26 0 0 0 chr6 10361461 10361487 -172053755 + AT_rich Low_complexity Low_complexity 1 26 0 810 204 43 69 chr6 10361770 10362001 -172053241 + MIR SINE MIR 2 226 -36 1056 140 0 48 chr6 10362958 10363144 -172052098 + AluSg/x SINE Alu 129 305 -5 431 341 30 12 chr6 10363288 10363455 -172051787 + MIR SINE MIR 17 186 -76 188 254 34 17 chr6 10363494 10363553 -172051689 + MIR SINE MIR 184 243 -19 1362 184 62 0 chr6 10363581 10363901 -172051341 + L1MA9 LINE L1 5963 6302 -10 24 53 0 0 chr6 10364788 10364826 -172050416 + AT_rich Low_complexity Low_complexity 1 38 0 1046 232 70 29 chr6 10364859 10365174 -172050068 - MER2 DNA MER2_type -3 342 15 345 335 99 0 chr6 10365613 10365774 -172049468 - L3 LINE CR1 -135 1442 1266 539 310 30 22 chr6 10365799 10365862 -172049380 - MIR SINE MIR -3 259 198 14074 124 46 14 chr6 10365862 10367923 -172047319 - Tigger1 DNA MER2_type -1 2417 273 2205 112 0 0 chr6 10367923 10368217 -172047025 + AluSc SINE Alu 16 309 0 14074 124 46 14 chr6 10368217 10368498 -172046744 - Tigger1 DNA MER2_type -2145 273 2 539 310 30 22 chr6 10368498 10368717 -172046525 - MIR SINE MIR -64 198 2 270 233 0 0 chr6 10369331 10369391 -172045851 + MER115 DNA AcHobo 2 61 -632 508 301 64 0 chr6 10369426 10369582 -172045660 + MLT1I LTR MaLR 244 409 0 21 36 0 0 chr6 10369654 10369682 -172045560 + AT_rich Low_complexity Low_complexity 1 28 0 305 268 16 24 chr6 10370909 10371032 -172044210 + (TA)n Simple_repeat Simple_repeat 1 122 0 277 159 14 14 chr6 10371109 10371153 -172044089 + (CA)n Simple_repeat Simple_repeat 2 48 -22 1285 190 85 45 chr6 10371153 10371484 -172043758 + MER2 DNA MER2_type 1 344 0 277 159 14 14 chr6 10371484 10371508 -172043734 + (CA)n Simple_repeat Simple_repeat 47 70 0 3600 52 0 0 chr6 10372113 10372559 -172042683 - L1PA7 LINE L1 -3 6151 5706 381 277 115 17 chr6 10372747 10372982 -172042260 + MIR SINE MIR 1 258 -4 443 314 47 47 chr6 10373637 10373809 -172041433 - MIR3 SINE MIR -21 187 16 2328 70 27 10 chr6 10374087 10374388 -172040854 + AluY SINE Alu 1 306 -5 189 74 0 0 chr6 10374997 10375024 -172040218 + (CCA)n Simple_repeat Simple_repeat 3 29 0 2526 59 0 0 chr6 10376184 10376489 -172038753 - AluY SINE Alu -6 305 1 385 258 102 60 chr6 10376548 10376715 -172038527 + MIR SINE MIR 55 228 -34 195 291 18 0 chr6 10377506 10377561 -172037681 + L2 LINE L2 3235 3290 -23 230 302 43 43 chr6 10377794 10377933 -172037309 + L2 LINE L2 2113 2251 -1063 1185 99 0 0 chr6 10377935 10378110 -172037132 + AluSq SINE Alu 132 306 0 2058 154 65 8 chr6 10378214 10378596 -172036646 - L1P LINE L1 -5185 961 558 1786 148 4 0 chr6 10378599 10378863 -172036379 - AluSx SINE Alu -10 302 38 293 318 61 99 chr6 10378893 10379305 -172035937 + L2 LINE L2 2872 3267 -5 948 198 0 0 chr6 10379504 10379671 -172035571 + AluJb SINE Alu 133 299 -13 1202 204 88 23 chr6 10379671 10379979 -172035263 - MER63B DNA MER1_type -101 335 8 293 321 79 60 chr6 10380045 10380578 -172034664 + L2 LINE L2 2647 3189 -83 195 42 0 0 chr6 10382102 10382126 -172033116 + (T)n Simple_repeat Simple_repeat 1 24 0 903 165 111 15 chr6 10382264 10382525 -172032717 - Charlie5 DNA MER1_type 0 2613 2328 1338 150 133 3 chr6 10382530 10382667 -172032575 - L1MA9 LINE L1 -3 6309 6191 302 67 22 0 chr6 10382667 10382712 -172032530 + (TG)n Simple_repeat Simple_repeat 1 46 0 1338 150 133 3 chr6 10382712 10382860 -172032382 - L1MA9 LINE L1 -121 6191 5987 5960 178 125 39 chr6 10382865 10384470 -172030772 - Charlie5 DNA MER1_type -276 2336 594 1096 199 50 32 chr6 10384474 10384756 -172030486 - Charlie5 DNA MER1_type -2319 293 7 264 267 27 13 chr6 10385200 10385275 -172029967 + L2 LINE L2 3238 3313 0 343 301 34 27 chr6 10388272 10388418 -172026824 - MIR3 SINE MIR -2 206 60 570 234 90 45 chr6 10391385 10391586 -172023656 + MIR SINE MIR 19 228 -34 2299 89 26 0 chr6 10391752 10392056 -172023186 + AluSq SINE Alu 1 312 -1 262 284 0 0 chr6 10392286 10392381 -172022861 - L1MC4 LINE L1 -1334 6708 6614 229 282 0 0 chr6 10392307 10392392 -172022850 + L1MC4 LINE L1 6614 6698 -1344 * 2174 87 14 3 chr6 10392856 10393145 -172022097 + AluY SINE Alu 1 292 -19 512 124 45 11 chr6 10393371 10393460 -172021782 - LTR23 LTR ERV1 -42 395 304 379 363 58 5 chr6 10396653 10396905 -172018337 - MIR SINE MIR 0 262 2 195 42 0 0 chr6 10397035 10397059 -172018183 + (A)n Simple_repeat Simple_repeat 1 24 0 716 268 17 6 chr6 10397061 10397240 -172018002 + MIR SINE MIR 65 245 -17 696 153 29 62 chr6 10397301 10397534 -172017708 + LTR12 LTR ERV1 1 287 -427 276 228 33 22 chr6 10397534 10397626 -172017616 + LTR30 LTR ERV1 551 643 -79 674 120 0 0 chr6 10397628 10397728 -172017514 + LTR12 LTR ERV1 615 714 0 1528 204 24 30 chr6 10397728 10398067 -172017175 - MLT1A1 LTR MaLR -28 337 1 319 310 98 35 chr6 10398443 10398617 -172016625 + MIR3 SINE MIR 18 202 -6 2677 181 28 19 chr6 10399217 10399785 -172015457 - L1MD3 LINE L1 -14 7981 7409 327 302 12 0 chr6 10399785 10399871 -172015371 - MLT1F1 LTR MaLR -436 131 45 351 0 0 0 chr6 10401040 10401079 -172014163 + (TG)n Simple_repeat Simple_repeat 1 39 0 188 247 178 14 chr6 10401525 10401598 -172013644 + MIR SINE MIR 101 185 -77 1469 171 54 6 chr6 10401917 10402233 -172013009 - L1MB3 LINE L1 -2 6181 5851 270 116 0 0 chr6 10402410 10402453 -172012789 + (CA)n Simple_repeat Simple_repeat 1 43 0 369 0 0 0 chr6 10404864 10404905 -172010337 + (CA)n Simple_repeat Simple_repeat 1 41 0 216 246 14 14 chr6 10405056 10405125 -172010117 + (TA)n Simple_repeat Simple_repeat 1 69 0 24 0 0 0 chr6 10406637 10406661 -172008581 + AT_rich Low_complexity Low_complexity 1 24 0 6836 172 60 18 chr6 10407355 10409180 -172006062 + L1MB3 LINE L1 370 2500 -3884 7261 155 25 14 chr6 10409192 10411863 -172003379 + L1MB3 LINE L1 3170 6109 -310 436 314 44 40 chr6 10411997 10412223 -172003019 + MIR SINE MIR 35 261 -1 25 0 0 0 chr6 10413827 10413852 -172001390 + AT_rich Low_complexity Low_complexity 1 25 0 848 126 44 0 chr6 10413919 10414054 -172001188 - L1MA5A LINE L1 -3 6294 6154 293 266 91 32 chr6 10414057 10414249 -172000993 - MIR SINE MIR -46 216 16 1679 214 81 19 chr6 10414333 10414855 -172000387 + MLT1F LTR MaLR 3 542 0 408 348 98 5 chr6 10415049 10415273 -171999969 + MIR SINE MIR 15 259 -3 204 217 0 22 chr6 10416427 10416473 -171998769 - MIR3 SINE MIR -15 193 149 601 298 11 27 chr6 10417956 10418144 -171997098 - MER5A DNA MER1_type -1 188 4 187 355 204 17 chr6 10419952 10420124 -171995118 - L2 LINE L2 -388 2926 2723 234 384 6 40 chr6 10420188 10420365 -171994877 - L2 LINE L2 -593 2721 2551 253 248 124 26 chr6 10420412 10420525 -171994717 - L2 LINE L2 -927 2387 2264 25 31 0 0 chr6 10421491 10421523 -171993719 + AT_rich Low_complexity Low_complexity 1 32 0 2051 139 0 3 chr6 10421935 10422236 -171993006 - AluJb SINE Alu -12 300 1 1610 179 17 7 chr6 10422900 10423191 -171992051 + AluJb SINE Alu 1 294 -18 251 302 12 12 chr6 10423507 10423593 -171991649 - MIR SINE MIR -97 165 80 1088 305 43 12 chr6 10423845 10424422 -171990820 + L1MC/D LINE L1 2236 2830 -3316 353 341 72 49 chr6 10424619 10424892 -171990350 + L1MC/D LINE L1 5359 5635 -486 198 0 0 0 chr6 10425309 10425331 -171989911 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 711 289 9 5 chr6 10425900 10426111 -171989131 - MIR SINE MIR -3 259 48 388 147 21 63 chr6 10426242 10426337 -171988905 + MER74A LTR ERVL 6 96 -462 * 1364 164 44 41 chr6 10426305 10426598 -171988644 + MER74A LTR ERVL 256 549 -9 2795 7 0 0 chr6 10427625 10427925 -171987317 + AluYa5 SINE Alu 1 300 -11 296 251 235 36 chr6 10428168 10428346 -171986896 - MIR SINE MIR -6 256 45 1543 167 44 20 chr6 10429659 10429953 -171985289 + AluJb SINE Alu 1 301 -11 383 219 106 53 chr6 10430426 10430577 -171984665 + MER5A DNA MER1_type 1 159 -30 7925 112 145 37 chr6 10430772 10432295 -171982947 - pTR5 LTR ERV1 -10 2428 742 753 127 0 18 chr6 10433119 10433229 -171982013 + FLAM_C SINE Alu 23 130 -13 1799 102 125 0 chr6 10433234 10433498 -171981744 + AluSp SINE Alu 1 297 -16 357 197 6 34 chr6 10433520 10433698 -171981544 + (TA)n Simple_repeat Simple_repeat 1 173 0 292 258 0 31 chr6 10433716 10433813 -171981429 + (TA)n Simple_repeat Simple_repeat 1 94 0 1263 242 74 12 chr6 10434178 10434375 -171980867 - MLT1A2 LTR MaLR -2 372 146 2114 112 20 7 chr6 10434375 10434679 -171980563 - AluSc SINE Alu -1 308 1 1263 242 74 12 chr6 10434679 10434807 -171980435 - MLT1A2 LTR MaLR -228 146 27 2144 120 27 0 chr6 10434812 10435112 -171980130 + AluSx SINE Alu 1 308 -4 2140 123 0 19 chr6 10437431 10437739 -171977503 + AluSq SINE Alu 1 302 -11 5001 195 27 48 chr6 10437920 10438972 -171976270 - MLT1A1-int LTR MaLR -706 1029 1 586 241 0 0 chr6 10438972 10439084 -171976158 - MLT1A1 LTR MaLR 0 365 254 389 89 0 0 chr6 10439083 10439139 -171976103 - MLT1A1 LTR MaLR -309 56 1 * 218 351 106 0 chr6 10439139 10439233 -171976009 + MIR SINE MIR 127 230 -32 * 377 351 9 0 chr6 10439232 10439343 -171975899 + L2 LINE L2 3160 3271 -1 297 75 0 0 chr6 10440190 10440230 -171975012 + (TG)n Simple_repeat Simple_repeat 1 40 0 276 200 0 0 chr6 10440893 10440958 -171974284 + GA-rich Low_complexity Low_complexity 4 68 0 189 74 0 0 chr6 10440966 10440993 -171974249 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 207 0 0 0 chr6 10441813 10441836 -171973406 + (CCA)n Simple_repeat Simple_repeat 2 24 0 333 0 0 0 chr6 10442561 10442598 -171972644 + (TG)n Simple_repeat Simple_repeat 1 37 0 363 282 62 43 chr6 10442906 10443081 -171972161 - MIR3 SINE MIR -18 190 15 288 0 0 0 chr6 10443380 10443412 -171971830 + (TG)n Simple_repeat Simple_repeat 2 33 0 1966 161 3 3 chr6 10443875 10444186 -171971056 + AluJo SINE Alu 1 311 -1 698 242 59 11 chr6 10444236 10444422 -171970820 - MIR SINE MIR -34 228 34 321 26 0 0 chr6 10444881 10444919 -171970323 + (CA)n Simple_repeat Simple_repeat 2 39 0 2151 89 0 4 chr6 10445350 10445619 -171969623 + AluSq SINE Alu 1 268 -45 236 30 30 0 chr6 10446896 10446929 -171968313 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 832 188 0 7 chr6 10446933 10447077 -171968165 - FRAM SINE Alu -30 146 4 2145 122 3 0 chr6 10447298 10447593 -171967649 + AluSx SINE Alu 1 296 -16 2140 92 4 0 chr6 10448394 10448667 -171966575 + AluSq SINE Alu 1 274 -39 1897 169 102 37 chr6 10448842 10449056 -171966186 - MSTA LTR MaLR 0 428 229 2346 94 0 13 chr6 10449056 10449363 -171965879 - AluY SINE Alu -8 303 1 1897 169 102 37 chr6 10449363 10449550 -171965692 - MSTA LTR MaLR -199 229 1 2118 101 4 0 chr6 10449620 10449898 -171965344 - AluSc SINE Alu -30 279 1 9274 147 11 36 chr6 10449900 10451488 -171963754 - MSTA-int LTR MaLR -30 1550 3 1807 162 128 8 chr6 10451490 10451842 -171963400 - MSTA LTR MaLR 0 428 35 180 0 0 0 chr6 10453303 10453323 -171961919 + (CA)n Simple_repeat Simple_repeat 2 21 0 2108 108 0 14 chr6 10453983 10454306 -171960936 + AluSx SINE Alu 1 319 0 1488 177 17 33 chr6 10455500 10455799 -171959443 + AluJo SINE Alu 11 304 -8 22 0 0 0 chr6 10457424 10457446 -171957796 + AT_rich Low_complexity Low_complexity 1 22 0 235 311 86 53 chr6 10457472 10457557 -171957685 - MIR SINE MIR -75 187 93 2222 116 0 0 chr6 10457557 10457851 -171957391 + AluSg SINE Alu 1 294 -16 235 311 86 53 chr6 10457851 10457916 -171957326 - MIR SINE MIR -169 93 32 2258 99 0 0 chr6 10459614 10459908 -171955334 - AluSg1 SINE Alu -11 298 5 186 0 88 0 chr6 10459983 10460017 -171955225 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1943 137 0 33 chr6 10460439 10460738 -171954504 - AluJb SINE Alu -23 289 1 1141 163 153 89 chr6 10462225 10462507 -171952735 + AluJb SINE Alu 2 301 -1 21 0 0 0 chr6 10462489 10462510 -171952732 + AT_rich Low_complexity Low_complexity 1 21 0 2307 101 3 0 chr6 10463756 10464052 -171951190 - AluSg SINE Alu -13 297 1 1634 179 102 43 chr6 10464135 10464509 -171950733 + MSTD LTR MaLR 1 396 0 506 121 35 103 chr6 10464953 10465017 -171950225 - MSTC LTR MaLR -320 108 54 2291 113 0 0 chr6 10465017 10465310 -171949932 - AluSg SINE Alu -17 293 1 506 121 35 103 chr6 10465310 10465361 -171949881 - MSTC LTR MaLR -374 54 1 22 0 0 0 chr6 10466024 10466046 -171949196 + AT_rich Low_complexity Low_complexity 1 22 0 611 213 87 14 chr6 10468007 10468181 -171947061 + LTR33 LTR ERVL 15 178 -343 1822 87 0 0 chr6 10468838 10469068 -171946174 + AluSg/x SINE Alu 80 309 -1 188 65 0 32 chr6 10469816 10469847 -171945395 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1156 42 0 0 chr6 10472092 10472234 -171943008 - AluY SINE Alu -8 303 162 336 24 0 0 chr6 10472406 10472447 -171942795 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 348 45 9 chr6 10472928 10473040 -171942202 + L2 LINE L2 3178 3293 -20 399 300 61 118 chr6 10473057 10473320 -171941922 - MIR SINE MIR -1 261 14 1338 256 113 39 chr6 10473806 10474344 -171940898 - MLT1E LTR MaLR -4 589 12 631 264 113 55 chr6 10474524 10474835 -171940407 + MLT1H LTR MaLR 21 349 -200 298 221 3 13 chr6 10474888 10474983 -171940259 + MLT1H LTR MaLR 461 549 0 22 35 0 0 chr6 10476330 10476359 -171938883 + AT_rich Low_complexity Low_complexity 1 29 0 373 284 74 65 chr6 10476506 10476712 -171938530 + HAL1b LINE L1 96 299 -1049 2311 101 7 7 chr6 10476712 10477020 -171938222 + AluY SINE Alu 1 308 -3 373 284 74 65 chr6 10477020 10477243 -171937999 + HAL1b LINE L1 299 529 -819 25 0 0 0 chr6 10477467 10477492 -171937750 + AT_rich Low_complexity Low_complexity 1 25 0 518 168 7 121 chr6 10477499 10477648 -171937594 - FLAM_C SINE Alu -1 132 1 34 24 0 0 chr6 10477804 10477845 -171937397 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr6 10477980 10478011 -171937231 + AT_rich Low_complexity Low_complexity 1 31 0 301 286 18 9 chr6 10478247 10478359 -171936883 + L1MC/D LINE L1 4030 4142 -2004 808 310 131 40 chr6 10478400 10479388 -171935854 + L1MC/D LINE L1 4245 5321 -825 288 294 12 0 chr6 10479389 10479474 -171935768 + (CATATA)n Simple_repeat Simple_repeat 4 89 0 347 220 13 60 chr6 10479480 10479630 -171935612 + L1MC/D LINE L1 5346 5488 -2320 537 177 0 0 chr6 10479696 10479792 -171935450 + L1MA5A LINE L1 6196 6291 -6 675 265 87 8 chr6 10479845 10480109 -171935133 - L1ME3A LINE L1 -215 5955 5671 2111 97 4 0 chr6 10480625 10480929 -171934313 - AluSc SINE Alu 0 305 1 2216 110 0 17 chr6 10481481 10481782 -171933460 + AluSc SINE Alu 1 296 -13 232 286 0 0 chr6 10482027 10482083 -171933159 + MIR SINE MIR 94 149 -113 809 127 0 0 chr6 10482086 10482204 -171933038 + FLAM_C SINE Alu 1 118 -15 252 0 0 0 chr6 10482207 10482235 -171933007 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2270 96 0 7 chr6 10482305 10482607 -171932635 - AluSc SINE Alu -9 300 1 1855 242 36 16 chr6 10484274 10484713 -171930529 + LTR40a LTR ERVL 6 458 -61 1877 234 89 29 chr6 10484713 10485272 -171929970 + MLT1E LTR MaLR 1 593 0 1855 242 36 16 chr6 10485272 10485336 -171929906 + LTR40a LTR ERVL 458 519 0 1369 256 7 44 chr6 10485349 10485755 -171929487 + HERVL40 LTR ERVL 17 407 -5123 3037 297 35 12 chr6 10485808 10486778 -171928464 + HERVL40 LTR ERVL 2892 3883 -1647 1789 219 79 58 chr6 10486778 10487525 -171927717 + L1M4b LINE L1 1024 1785 -5070 1943 114 0 22 chr6 10487527 10487799 -171927443 + AluSx SINE Alu 1 266 -46 513 86 0 25 chr6 10487799 10487880 -171927362 + Alu SINE Alu 230 308 -4 1282 281 76 38 chr6 10487883 10488604 -171926638 + L1M4b LINE L1 1789 2687 -4451 4322 239 38 49 chr6 10488634 10490524 -171924718 + L1ME4a LINE L1 1734 3555 -2660 1681 145 36 64 chr6 10490524 10490882 -171924360 - MER7A DNA MER2_type 0 346 1 4322 239 38 49 chr6 10490882 10491007 -171924235 + L1ME4a LINE L1 3555 3680 -2535 4841 45 6 0 chr6 10491017 10491642 -171923600 + L1P LINE L1 8 636 -5510 5575 39 1 0 chr6 10491642 10492311 -171922931 + L1PA4 LINE L1 5483 6152 -3 3094 217 26 22 chr6 10492316 10493082 -171922160 + L1ME4a LINE L1 3677 4448 -1767 2158 124 0 0 chr6 10493082 10493381 -171921861 + AluSx SINE Alu 6 304 -8 3094 217 26 22 chr6 10493381 10493463 -171921779 + L1ME4a LINE L1 4448 4528 -1687 2290 87 3 0 chr6 10493473 10493773 -171921469 + AluY SINE Alu 1 301 -10 296 320 10 0 chr6 10493779 10493879 -171921363 + HERVL40 LTR ERVL 4570 4670 -353 * 1258 218 26 0 chr6 10493857 10494190 -171921052 + HERVL40 LTR ERVL 2783 5522 -8 1410 226 174 16 chr6 10494222 10494659 -171920583 + LTR40a LTR ERVL 13 518 -1 378 0 0 0 chr6 10495078 10495120 -171920122 + (CA)n Simple_repeat Simple_repeat 2 43 0 3227 62 28 9 chr6 10495322 10495776 -171919466 + L1PA6 LINE L1 5708 6169 0 1274 97 0 0 chr6 10495880 10496045 -171919197 + AluSg/x SINE Alu 130 294 -16 2094 95 70 0 chr6 10499439 10499724 -171915518 - AluSq SINE Alu -8 305 1 28 29 0 0 chr6 10499872 10499907 -171915335 + AT_rich Low_complexity Low_complexity 1 35 0 4086 129 14 3 chr6 10500066 10500731 -171914511 + L1MC1 LINE L1 5661 6332 -1 643 278 98 31 chr6 10501292 10501516 -171913726 + L1ME4a LINE L1 5228 5436 -795 1825 155 50 0 chr6 10501516 10501794 -171913448 + AluSx SINE Alu 1 292 -20 643 278 98 31 chr6 10501794 10501963 -171913279 + L1ME4a LINE L1 5436 5592 -639 198 0 0 0 chr6 10501963 10501985 -171913257 + (TA)n Simple_repeat Simple_repeat 2 23 0 643 278 98 31 chr6 10501985 10502180 -171913062 + L1ME4a LINE L1 5592 5868 -363 1676 168 0 0 chr6 10502696 10502970 -171912272 - MLT1B LTR MaLR 0 390 117 613 110 64 0 chr6 10503000 10503109 -171912133 - L1MA1 LINE L1 0 6302 6187 225 0 0 0 chr6 10503203 10503228 -171912014 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 727 54 0 54 chr6 10503514 10503548 -171911694 - MLT1B LTR MaLR -284 106 72 1894 144 32 53 chr6 10503548 10503922 -171911320 + MER47A DNA MER2_type 1 366 0 727 54 0 54 chr6 10503922 10503999 -171911243 - MLT1B LTR MaLR -318 72 1 225 0 0 0 chr6 10504605 10504630 -171910612 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 261 248 17 60 chr6 10504723 10504840 -171910402 + HAL1b LINE L1 439 550 -798 923 271 26 0 chr6 10506173 10506402 -171908840 - MIR SINE MIR -1 261 27 277 276 51 31 chr6 10506401 10506499 -171908743 + MER5A DNA MER1_type 79 178 -11 * 414 229 93 7 chr6 10506622 10506762 -171908480 + L1ME4a LINE L1 6025 6176 -14 946 218 56 23 chr6 10510107 10510323 -171904919 - MER58A DNA MER1_type 0 224 2 878 275 83 81 chr6 10511227 10511573 -171903669 - L3 LINE CR1 -2 1575 1226 1349 209 92 9 chr6 10511573 10511888 -171903354 - MER58B DNA MER1_type 0 341 1 878 275 83 81 chr6 10511888 10511974 -171903268 - L3 LINE CR1 -351 1226 1142 2259 107 0 10 chr6 10511997 10512306 -171902936 - AluSx SINE Alu 0 312 7 288 253 41 175 chr6 10512350 10512642 -171902600 - MIR SINE MIR -4 258 6 * 391 351 68 16 chr6 10512615 10512863 -171902379 - L3 LINE CR1 -1139 438 178 2412 99 0 0 chr6 10512965 10513277 -171901965 + AluSx SINE Alu 1 312 0 187 133 0 0 chr6 10513277 10513307 -171901935 + (GAAAA)n Simple_repeat Simple_repeat 5 180 0 373 282 14 28 chr6 10513307 10513449 -171901793 + MARNA DNA Mariner 427 566 -20 221 0 0 33 chr6 10513491 10513521 -171901721 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3495 108 15 2 chr6 10514148 10514618 -171900624 - L1PA11 LINE L1 -4 6170 5695 2256 108 0 23 chr6 10514629 10514935 -171900307 - AluSx SINE Alu -13 299 1 472 263 7 29 chr6 10515093 10515230 -171900012 + L2 LINE L2 3168 3301 -12 273 98 0 0 chr6 10515232 10515273 -171899969 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 682 198 150 55 chr6 10515396 10515669 -171899573 + L1MC5 LINE L1 7609 7907 -54 331 233 148 74 chr6 10515794 10515983 -171899259 - L2 LINE L2 -2 3311 3109 288 200 0 0 chr6 10516035 10516095 -171899147 + (TG)n Simple_repeat Simple_repeat 1 60 0 198 283 0 0 chr6 10516408 10516454 -171898788 + L2 LINE L2 3223 3268 -4 1347 171 87 95 chr6 10517612 10517980 -171897262 - MLT1A2 LTR MaLR -4 370 6 1120 274 84 41 chr6 10518086 10518733 -171896509 - L2 LINE L2 0 3313 2636 311 314 66 93 chr6 10518866 10519308 -171895934 - L2 LINE L2 -7 3265 2836 250 119 0 24 chr6 10519581 10519623 -171895619 - MLT1A2 LTR MaLR -301 73 33 28 0 0 0 chr6 10522344 10522372 -171892870 + AT_rich Low_complexity Low_complexity 1 28 0 2649 121 58 0 chr6 10523435 10523816 -171891426 - MER57A LTR ERV1 0 403 1 325 306 55 73 chr6 10524261 10524588 -171890654 + L2 LINE L2 2931 3251 -62 216 207 0 35 chr6 10525004 10525062 -171890180 + GA-rich Low_complexity Low_complexity 4 59 0 852 198 6 6 chr6 10525404 10525599 -171889643 - AluJ SINE Alu 0 327 133 207 0 0 0 chr6 10525599 10525622 -171889620 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1778 154 25 0 chr6 10525625 10525779 -171889463 - AluSx SINE Alu -25 287 121 393 39 0 0 chr6 10525779 10525830 -171889412 + (TG)n Simple_repeat Simple_repeat 2 52 0 1778 154 25 0 chr6 10525830 10525955 -171889287 - AluSx SINE Alu -191 121 1 889 112 0 30 chr6 10525988 10526122 -171889120 - AluJ SINE Alu -178 134 5 1319 198 0 71 chr6 10526825 10527148 -171888094 + AluJo SINE Alu 3 302 -10 340 225 63 70 chr6 10527241 10527500 -171887742 + L1ME4a LINE L1 5694 5962 -159 201 195 0 0 chr6 10527684 10527725 -171887517 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1635 210 159 67 chr6 10527748 10527976 -171887266 + MLT1E2 LTR MaLR 2 207 -419 2355 124 18 47 chr6 10527976 10528362 -171886880 - THE1C LTR MaLR 0 375 1 1635 210 159 67 chr6 10528362 10528704 -171886538 + MLT1E2 LTR MaLR 207 625 -1 4165 128 181 105 chr6 10528963 10530406 -171884836 + pTR5 LTR ERV1 762 2437 -1 259 264 100 9 chr6 10531618 10531728 -171883514 - MIR SINE MIR -20 242 123 239 318 23 23 chr6 10531901 10531989 -171883253 - MIR SINE MIR -144 118 31 1943 132 0 7 chr6 10532018 10532299 -171882943 + AluSg SINE Alu 24 302 -8 620 226 101 20 chr6 10532317 10532516 -171882726 + L1MC5 LINE L1 7715 7929 -32 378 0 0 0 chr6 10533367 10533409 -171881833 + (CA)n Simple_repeat Simple_repeat 2 43 0 399 278 173 21 chr6 10533412 10533603 -171881639 + MLT1L LTR MaLR 312 531 -84 196 115 0 0 chr6 10534205 10534231 -171881011 - L2 LINE L2 -19 3253 3228 235 370 24 0 chr6 10534662 10534789 -171880453 - MIR3 SINE MIR -7 201 72 28 0 0 0 chr6 10535989 10536017 -171879225 + AT_rich Low_complexity Low_complexity 1 28 0 281 204 0 0 chr6 10536391 10536445 -171878797 - L2 LINE L2 0 3272 3219 696 257 50 37 chr6 10536487 10536705 -171878537 - MIR SINE MIR -19 243 23 1545 193 10 13 chr6 10536901 10537212 -171878030 + AluJo SINE Alu 1 310 -2 224 295 0 0 chr6 10537215 10537276 -171877966 + A-rich Low_complexity Low_complexity 2 62 0 2174 105 7 7 chr6 10538521 10538826 -171876416 + AluSx SINE Alu 3 307 -5 189 0 0 0 chr6 10538927 10538948 -171876294 + (A)n Simple_repeat Simple_repeat 1 21 0 1052 248 67 25 chr6 10538962 10539277 -171875965 - MLT1K LTR MaLR -69 519 192 2282 134 33 3 chr6 10539337 10539696 -171875546 - MLT1B LTR MaLR 0 390 21 377 274 32 8 chr6 10540052 10540176 -171875066 + MER103 DNA DNA 19 145 -21 2277 164 11 14 chr6 10540337 10540703 -171874539 + MLT1A1 LTR MaLR 1 365 0 448 213 11 0 chr6 10542553 10542647 -171872595 - MIR3 SINE MIR -13 195 101 198 324 84 84 chr6 10543179 10543889 -171871353 + L2 LINE L2 2246 2955 -359 465 243 17 51 chr6 10544153 10544330 -171870912 + MER104 DNA Tc2 7 177 -3 4121 61 29 2 chr6 10544330 10544840 -171870402 + L1PA8 LINE L1 5640 6163 -9 871 81 0 16 chr6 10544851 10544974 -171870268 + L1PA8 LINE L1 6052 6172 0 231 221 29 44 chr6 10545496 10545564 -171869678 - MIR SINE MIR -7 255 189 1682 196 101 16 chr6 10545582 10545959 -171869283 + LTR52 LTR ERVL 1 409 -12 279 269 0 13 chr6 10546090 10546168 -171869074 + L2 LINE L2 2599 2675 -639 1468 253 73 22 chr6 10547436 10547847 -171867395 - MER70B LTR ERVL -146 432 1 207 0 0 0 chr6 10549517 10549540 -171865702 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 2241 231 47 32 chr6 10550382 10550975 -171864267 + Charlie1a DNA MER1_type 27 628 -827 204 173 19 19 chr6 10551604 10551656 -171863586 + T-rich Low_complexity Low_complexity 2 53 0 552 157 189 0 chr6 10551808 10551967 -171863275 - MER33 DNA MER1_type -19 305 117 1309 214 73 28 chr6 10551967 10552325 -171862917 - MLT1A2 LTR MaLR 0 467 1 719 183 0 15 chr6 10552325 10552441 -171862801 - MER33 DNA MER1_type -205 119 6 547 268 276 13 chr6 10553614 10553991 -171861251 + MLT1K LTR MaLR 1 476 0 195 314 175 22 chr6 10554432 10554569 -171860673 + L2 LINE L2 2630 2787 -527 2128 127 0 34 chr6 10554764 10555088 -171860154 - AluSp SINE Alu 0 313 1 2880 22 0 0 chr6 10556604 10556922 -171858320 - AluYb8 SINE Alu 0 318 1 2129 101 57 0 chr6 10557168 10557464 -171857778 + AluSq SINE Alu 1 313 0 3156 95 5 16 chr6 10557899 10558330 -171856912 + L1PA13 LINE L1 5736 6161 -2 2403 85 0 3 chr6 10558526 10558833 -171856409 - AluY SINE Alu -5 306 1 1648 151 57 72 chr6 10558835 10559240 -171856002 - Charlie1 DNA MER1_type -20 2741 2343 1957 144 26 32 chr6 10559559 10559899 -171855343 + LTR32 LTR ERVL 15 352 -119 230 86 29 0 chr6 10559948 10559983 -171855259 + LTR32 LTR ERVL 317 352 -119 226 86 29 0 chr6 10559990 10560025 -171855217 + LTR32 LTR ERVL 317 352 -119 227 114 29 0 chr6 10560073 10560108 -171855134 + LTR32 LTR ERVL 317 352 -119 227 114 29 0 chr6 10560115 10560150 -171855092 + LTR32 LTR ERVL 317 352 -119 226 114 29 0 chr6 10560199 10560234 -171855008 + LTR32 LTR ERVL 317 352 -119 238 86 29 0 chr6 10560241 10560276 -171854966 + LTR32 LTR ERVL 317 352 -119 263 29 29 0 chr6 10560283 10560318 -171854924 + LTR32 LTR ERVL 317 352 -119 233 167 0 0 chr6 10560325 10560361 -171854881 + LTR32 LTR ERVL 317 352 -119 237 30 91 0 chr6 10560368 10560401 -171854841 + LTR32 LTR ERVL 317 352 -119 821 173 26 32 chr6 10560408 10560564 -171854678 + LTR32 LTR ERVL 317 471 0 2417 166 100 35 chr6 10560569 10561003 -171854239 + MLT2B1 LTR ERVL 1 472 -48 402 21 0 0 chr6 10561003 10561050 -171854192 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2417 166 100 35 chr6 10561050 10561103 -171854139 + MLT2B1 LTR ERVL 472 520 0 358 218 206 47 chr6 10561768 10561938 -171853304 + MLT1K LTR MaLR 388 584 -4 585 222 137 0 chr6 10562831 10562984 -171852258 - MER69A DNA AcHobo -3 174 1 298 305 26 71 chr6 10563537 10563691 -171851551 + MIR SINE MIR 52 198 -64 2569 102 11 3 chr6 10564243 10564604 -171850638 + THE1B LTR MaLR 1 364 0 346 276 40 51 chr6 10564725 10565076 -171850166 + HAL1 LINE L1 835 1181 -1326 1929 144 46 0 chr6 10565196 10565481 -171849761 + AluJo SINE Alu 1 298 -14 2096 155 46 46 chr6 10565597 10566029 -171849213 - Tigger2a DNA MER2_type -2 432 1 502 301 110 29 chr6 10566521 10566755 -171848487 - MIR SINE MIR -11 251 3 392 252 63 16 chr6 10566781 10566908 -171848334 - MIR SINE MIR -46 216 84 2422 77 0 3 chr6 10568200 10568497 -171846745 + AluY SINE Alu 1 296 -15 21 0 0 0 chr6 10569726 10569747 -171845495 + AT_rich Low_complexity Low_complexity 1 21 0 740 237 49 17 chr6 10570035 10570279 -171844963 - MIR SINE MIR 0 262 20 212 133 44 0 chr6 10570704 10570749 -171844493 + T-rich Low_complexity Low_complexity 6 52 0 3234 76 40 0 chr6 10570749 10571199 -171844043 - L1PB1 LINE L1 0 6151 5684 228 111 0 0 chr6 10571214 10571250 -171843992 + (T)n Simple_repeat Simple_repeat 1 36 0 235 275 210 6 chr6 10572149 10572502 -171842740 + L1ME4a LINE L1 5696 6120 -1 364 179 439 0 chr6 10573261 10573384 -171841858 - MER5B DNA MER1_type 0 178 2 291 54 0 0 chr6 10575259 10575296 -171839946 + (TG)n Simple_repeat Simple_repeat 1 37 0 234 286 0 77 chr6 10576740 10576831 -171838411 - L2 LINE L2 -5 3267 3184 3371 102 18 75 chr6 10577373 10577931 -171837311 - MER1A DNA MER1_type 0 527 2 198 248 70 85 chr6 10578754 10578883 -171836359 + MER5A DNA MER1_type 36 162 -27 180 77 0 0 chr6 10579567 10579593 -171835649 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 944 210 0 6 chr6 10581972 10582139 -171833103 + FRAM SINE Alu 1 166 0 1991 310 101 1 chr6 10582494 10583545 -171831697 - L2 LINE L2 0 3313 2155 415 205 24 0 chr6 10583558 10583712 -171831530 + AluJ/FRAM SINE Alu 226 381 0 813 168 17 11 chr6 10583722 10583901 -171831341 + GA-rich Low_complexity Low_complexity 1 180 0 183 312 165 0 chr6 10584045 10584154 -171831088 - L2 LINE L2 -1185 2129 2003 1665 158 45 27 chr6 10584371 10584663 -171830579 + AluJo SINE Alu 1 297 -15 625 271 70 70 chr6 10584664 10585642 -171829600 + L1MEd LINE L1 567 1581 -4729 8339 29 1 0 chr6 10585943 10587705 -171827537 + L1PA3 LINE L1 4392 6154 -1 5422 131 31 5 chr6 10588028 10589183 -171826059 + L1PB2 LINE L1 4964 6148 -3 2141 116 27 0 chr6 10589208 10589502 -171825740 + AluSx SINE Alu 1 302 -10 1481 276 90 35 chr6 10589508 10591089 -171824153 + L1MEd LINE L1 2228 3895 -2234 1433 195 0 0 chr6 10591196 10591442 -171823800 - AluJo SINE Alu -66 246 1 22 35 0 0 chr6 10591705 10591734 -171823508 + AT_rich Low_complexity Low_complexity 1 29 0 243 347 81 0 chr6 10591824 10591948 -171823294 - L2 LINE L2 -2417 897 764 189 0 0 0 chr6 10593252 10593273 -171821969 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 2099 122 20 0 chr6 10594493 10594797 -171820445 + AluSq SINE Alu 1 310 -3 465 274 9 0 chr6 10594828 10594941 -171820301 - MIR3 SINE MIR -21 187 74 373 196 9 9 chr6 10595483 10595595 -171819647 + (TA)n Simple_repeat Simple_repeat 2 113 0 371 210 72 6 chr6 10595648 10595815 -171819427 + (TA)n Simple_repeat Simple_repeat 2 179 0 294 241 0 74 chr6 10597384 10597492 -171817750 + MIR SINE MIR 33 132 -76 267 307 111 56 chr6 10597949 10598291 -171816951 + MLT1K LTR MaLR 191 551 -37 628 218 8 0 chr6 10598466 10598590 -171816652 + FLAM_A SINE Alu 1 125 -8 331 296 31 75 chr6 10599033 10599192 -171816050 + MER5A DNA MER1_type 26 177 -12 340 259 28 28 chr6 10599214 10599322 -171815920 + MER5A DNA MER1_type 54 161 -28 1629 175 28 15 chr6 10599361 10599686 -171815556 - MLT1A1 LTR MaLR -13 352 24 374 254 62 57 chr6 10600054 10600231 -171815011 + MER5B DNA MER1_type 1 178 0 1622 171 14 24 chr6 10600402 10600689 -171814553 - AluJo SINE Alu -15 297 14 2085 105 14 11 chr6 10601067 10601352 -171813890 - AluSg SINE Alu -12 298 13 2059 127 3 0 chr6 10601604 10601888 -171813354 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr6 10601888 10601912 -171813330 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 484 323 40 20 chr6 10602282 10602480 -171812762 + MIR SINE MIR 23 224 -38 692 230 110 19 chr6 10602580 10602789 -171812453 + L3b LINE CR1 1103 1330 -253 1804 153 0 18 chr6 10603006 10603288 -171811954 + AluJb SINE Alu 32 308 -4 286 356 42 0 chr6 10603423 10603541 -171811701 - MIR SINE MIR -120 142 20 1954 140 14 0 chr6 10604189 10604482 -171810760 + AluSx SINE Alu 1 297 -15 271 140 0 0 chr6 10605055 10605105 -171810137 + MADE1 DNA Mariner 1 50 -30 1297 101 141 4 chr6 10605545 10605772 -171809470 - Tigger2 DNA MER2_type 0 2718 2461 4037 135 29 18 chr6 10605847 10606105 -171809137 - Tigger2 DNA MER2_type -1984 734 480 1924 124 4 0 chr6 10606105 10606371 -171808871 - AluSx SINE Alu -13 299 33 4037 135 29 18 chr6 10606371 10606830 -171808412 - Tigger2 DNA MER2_type -2238 480 9 1159 249 77 48 chr6 10607551 10608032 -171807210 + L2 LINE L2 2819 3313 0 1694 197 10 0 chr6 10609773 10610068 -171805174 + AluJb SINE Alu 1 298 -14 772 235 98 0 chr6 10610369 10610573 -171804669 + MER58A DNA MER1_type 1 224 0 2294 96 3 0 chr6 10610813 10611105 -171804137 - AluSp SINE Alu -20 293 1 1889 133 32 7 chr6 10611117 10611402 -171803840 - AluJo SINE Alu -20 292 1 2161 98 13 0 chr6 10611589 10611905 -171803337 + L1PA8 LINE L1 5851 6170 -2 900 281 50 0 chr6 10611910 10612152 -171803090 - MIR SINE MIR -3 259 6 2312 90 0 0 chr6 10612289 10612578 -171802664 - AluSc SINE Alu -20 289 1 3007 172 24 20 chr6 10613309 10613903 -171801339 + L1MC1 LINE L1 29 624 -5802 * 5124 195 28 34 chr6 10613890 10616289 -171798953 + L1MC1 LINE L1 3903 6293 -320 2033 122 21 0 chr6 10616289 10616575 -171798667 - AluSx SINE Alu -20 292 1 5124 195 28 34 chr6 10616575 10616877 -171798365 + L1MC1 LINE L1 6293 6595 -18 32 0 0 0 chr6 10616880 10616912 -171798330 + AT_rich Low_complexity Low_complexity 1 32 0 336 257 233 38 chr6 10618910 10618942 -171796300 - MIR SINE MIR -2 260 236 530 185 117 19 chr6 10618942 10619104 -171796138 - MER104 DNA MER2_type -2 178 1 336 257 233 38 chr6 10619104 10619281 -171795961 - MIR SINE MIR -26 236 10 660 200 0 9 chr6 10619663 10619778 -171795464 + FLAM_A SINE Alu 5 118 -15 1631 189 0 7 chr6 10619805 10620085 -171795157 + AluJb SINE Alu 19 296 -16 5355 124 30 45 chr6 10620480 10620755 -171794487 - L1PA16 LINE L1 -9 6157 5879 1578 151 7 52 chr6 10620755 10621027 -171794215 - AluJb SINE Alu -52 260 1 5355 124 30 45 chr6 10621027 10621634 -171793608 - L1PA16 LINE L1 -287 5879 5300 7082 55 3 6 chr6 10621634 10623253 -171791989 - L1PA6 LINE L1 -1 6153 4547 5355 124 30 45 chr6 10623253 10623516 -171791726 - L1PA16 LINE L1 -866 5300 5035 853 133 11 22 chr6 10623882 10624062 -171791180 + GA-rich Low_complexity Low_complexity 3 180 0 2303 89 17 0 chr6 10625064 10625356 -171789886 - AluSx SINE Alu -15 297 1 189 0 0 0 chr6 10626490 10626511 -171788731 + (GA)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chr6 10627099 10627124 -171788118 + AT_rich Low_complexity Low_complexity 1 25 0 258 32 0 0 chr6 10627200 10627231 -171788011 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 671 71 0 0 chr6 10627233 10627318 -171787924 - L1PA8 LINE L1 -13 6159 6075 2475 83 3 6 chr6 10628006 10628319 -171786923 - AluSp SINE Alu -1 312 1 217 281 122 24 chr6 10629003 10629085 -171786157 - L2 LINE L2 0 3313 3224 475 355 158 26 chr6 10629601 10630457 -171784785 - L2 LINE L2 -641 2673 1705 25 31 0 0 chr6 10630545 10630577 -171784665 + AT_rich Low_complexity Low_complexity 1 32 0 6794 222 63 30 chr6 10630807 10634174 -171781068 + L1MD1 LINE L1 19 3275 -3265 1914 164 37 70 chr6 10634174 10634656 -171780586 + MER31B LTR ERV1 1 466 0 6794 222 63 30 chr6 10634656 10635494 -171779748 + L1MD1 LINE L1 3275 4084 -2456 252 0 0 0 chr6 10635494 10635522 -171779720 + (TA)n Simple_repeat Simple_repeat 2 29 0 6794 222 63 30 chr6 10635522 10635630 -171779612 + L1MD1 LINE L1 4084 4187 -2353 1586 174 4 12 chr6 10635630 10635889 -171779353 + AluJo SINE Alu 40 296 -16 6794 222 63 30 chr6 10635889 10636203 -171779039 + L1MD1 LINE L1 4187 4968 -1572 1615 199 78 45 chr6 10636210 10636577 -171778665 - MLT1C LTR MaLR 0 467 81 2120 146 84 30 chr6 10636577 10636981 -171778261 - MSTA LTR MaLR -2 426 1 1615 199 78 45 chr6 10636981 10637060 -171778182 - MLT1C LTR MaLR -386 81 6 4249 189 41 53 chr6 10637068 10637190 -171778052 + L1MD1 LINE L1 4976 5098 -1538 2439 80 0 3 chr6 10637190 10637502 -171777740 + AluY SINE Alu 1 311 0 4249 189 41 53 chr6 10637502 10637976 -171777266 + L1MD1 LINE L1 5098 5576 -1060 2361 90 0 19 chr6 10637976 10638288 -171776954 + AluY SINE Alu 1 306 -5 4249 189 41 53 chr6 10638288 10638491 -171776751 + L1MD1 LINE L1 5576 5780 -856 2921 56 0 0 chr6 10638491 10638846 -171776396 - THE1A LTR MaLR 0 355 1 4249 189 41 53 chr6 10638846 10639392 -171775850 + L1MD1 LINE L1 5780 6310 -326 2308 102 3 0 chr6 10639392 10639687 -171775555 - AluSx SINE Alu -16 296 1 4249 189 41 53 chr6 10639687 10640011 -171775231 + L1MD1 LINE L1 6310 6636 0 341 322 175 0 chr6 10640387 10640558 -171774684 - MIR SINE MIR -12 250 50 587 53 0 0 chr6 10640571 10640647 -171774595 + Alu SINE Alu 1 76 -242 5701 83 5 1 chr6 10640667 10641486 -171773756 + L1PA12 LINE L1 5346 6167 -1 192 152 0 0 chr6 10641509 10641542 -171773700 + A-rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr6 10642700 10642732 -171772510 + AT_rich Low_complexity Low_complexity 1 32 0 328 301 21 0 chr6 10642883 10642976 -171772266 + L1MC4 LINE L1 6614 6708 -1334 1368 141 18 0 chr6 10643183 10643410 -171771832 + MLT1B LTR MaLR 1 231 -159 688 177 0 19 chr6 10643412 10643570 -171771672 + GA-rich Low_complexity Low_complexity 3 157 0 1197 51 0 17 chr6 10643583 10643760 -171771482 + (GAA)n Simple_repeat Simple_repeat 3 176 0 1062 121 24 0 chr6 10643774 10643940 -171771302 + MLT1B LTR MaLR 221 390 0 1625 193 0 60 chr6 10644343 10644496 -171770746 + AluJb SINE Alu 1 125 -187 2230 107 0 7 chr6 10644496 10644809 -171770433 + AluSc SINE Alu 1 309 0 1625 193 0 60 chr6 10644809 10644987 -171770255 + AluJb SINE Alu 125 312 0 302 171 14 0 chr6 10644989 10645059 -171770183 + GA-rich Low_complexity Low_complexity 3 73 0 2012 247 16 11 chr6 10645059 10645630 -171769612 + L1MEc LINE L1 413 986 -5410 1170 160 32 0 chr6 10645676 10645863 -171769379 + AluJb SINE Alu 87 279 -33 261 169 42 0 chr6 10645879 10645950 -171769292 + L1MEc LINE L1 1011 1084 -5312 208 275 101 0 chr6 10645950 10646019 -171769223 + MIR SINE MIR 151 226 -36 1403 131 139 59 chr6 10647047 10647384 -171767858 - THE1B LTR MaLR 0 364 1 424 239 8 90 chr6 10647712 10647846 -171767396 + MER5A DNA MER1_type 4 126 -63 280 79 4 180 chr6 10647964 10648038 -171767204 + MLT1B LTR MaLR 1 65 -309 186 43 0 0 chr6 10648066 10648089 -171767153 + (A)n Simple_repeat Simple_repeat 1 23 0 531 243 88 50 chr6 10649141 10649322 -171765920 - MIR SINE MIR -43 219 32 2225 118 3 0 chr6 10649332 10649636 -171765606 + AluSp SINE Alu 1 305 -8 1290 117 0 0 chr6 10649636 10649807 -171765435 + AluSp SINE Alu 134 304 -9 584 290 45 49 chr6 10650011 10650122 -171765120 + MIR SINE MIR 40 150 -112 2268 105 3 0 chr6 10650122 10650428 -171764814 + AluSg SINE Alu 1 307 -3 584 290 45 49 chr6 10650428 10650540 -171764702 + MIR SINE MIR 150 262 0 199 316 132 0 chr6 10650560 10650636 -171764606 + L2 LINE L2 3186 3271 -1 2325 131 14 3 chr6 10650780 10651140 -171764102 + THE1B LTR MaLR 1 364 0 2276 105 0 10 chr6 10651344 10651649 -171763593 + AluY SINE Alu 1 302 -9 1999 139 0 23 chr6 10651660 10651963 -171763279 + AluSx SINE Alu 1 296 -16 24 53 0 0 chr6 10652140 10652178 -171763064 + AT_rich Low_complexity Low_complexity 1 38 0 2167 64 0 64 chr6 10652492 10652803 -171762439 - AluY SINE Alu -20 291 1 195 42 0 0 chr6 10653330 10653354 -171761888 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 369 309 24 8 chr6 10705506 10705629 -171709613 - L2 LINE L2 0 3272 3148 736 192 49 105 chr6 10705950 10705977 -171709265 - LTR37B LTR ERV1 -1 467 440 2164 229 45 9 chr6 10705977 10706422 -171708820 + LTR40b LTR ERVL 1 461 -1 736 192 49 105 chr6 10706422 10706534 -171708708 - LTR37B LTR ERV1 -28 440 323 2271 114 0 0 chr6 10706534 10706841 -171708401 + AluSg SINE Alu 1 307 -3 736 192 49 105 chr6 10706841 10706853 -171708389 - LTR37B LTR ERV1 -145 323 312 1598 142 32 64 chr6 10706853 10707164 -171708078 + AluJb SINE Alu 1 301 -11 303 28 0 0 chr6 10707164 10707200 -171708042 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 736 192 49 105 chr6 10707200 10707331 -171707911 - LTR37B LTR ERV1 -154 314 198 500 156 43 118 chr6 10707372 10707583 -171707659 - LTR37B LTR ERV1 -268 200 6 402 252 136 7 chr6 10707584 10707739 -171707503 + MIR SINE MIR 86 260 -2 300 154 0 0 chr6 10707817 10707869 -171707373 + (TG)n Simple_repeat Simple_repeat 1 52 0 23 33 0 0 chr6 10707988 10708018 -171707224 + AT_rich Low_complexity Low_complexity 1 30 0 957 145 42 190 chr6 10708970 10709073 -171706169 + MER33 DNA MER1_type 1 118 -2506 2140 123 3 7 chr6 10709073 10709375 -171705867 + AluSx SINE Alu 1 301 -11 957 145 42 190 chr6 10709375 10709647 -171705595 + MER33 DNA MER1_type 118 363 0 295 318 13 73 chr6 10709726 10709877 -171705365 + MIR3 SINE MIR 48 189 -19 440 294 61 39 chr6 10710144 10710324 -171704918 - MLT1I LTR MaLR -3 406 223 2042 135 4 0 chr6 10710598 10710879 -171704363 + AluSx SINE Alu 1 282 -30 2060 124 3 3 chr6 10711011 10711333 -171703909 + AluSx SINE Alu 1 322 0 589 332 24 0 chr6 10712328 10712533 -171702709 - MIR SINE MIR -6 256 47 880 173 25 12 chr6 10712558 10712720 -171702522 - MLT2C1 LTR ERVL 0 397 234 939 106 0 0 chr6 10712724 10712866 -171702376 + (TTCC)n Simple_repeat Simple_repeat 4 145 0 1224 152 0 30 chr6 10712866 10713063 -171702179 - AluJo SINE Alu -35 277 87 1249 178 46 0 chr6 10713063 10713282 -171701960 - MLT2C1 LTR ERVL -168 229 1 2394 97 0 0 chr6 10713313 10713621 -171701621 + AluSc SINE Alu 1 308 -1 2330 102 3 13 chr6 10713795 10714110 -171701132 - AluSp SINE Alu -1 312 1 1384 152 137 31 chr6 10714383 10714678 -171700564 + AluJo SINE Alu 1 322 0 1201 174 5 9 chr6 10714709 10714922 -171700320 - AluJo SINE Alu -14 298 87 21 0 0 0 chr6 10715178 10715199 -171700043 + AT_rich Low_complexity Low_complexity 1 21 0 1543 160 86 12 chr6 10715885 10716141 -171699101 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr6 10716145 10716170 -171699072 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2167 115 3 3 chr6 10716574 10716879 -171698363 + AluSx SINE Alu 1 305 -7 2011 171 39 26 chr6 10717189 10717604 -171697638 - LOR1b LTR ERV1 -32 429 10 2120 80 11 0 chr6 10718929 10719205 -171696037 + AluSx SINE Alu 21 299 -13 267 98 0 0 chr6 10719205 10719240 -171696002 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 2377 84 3 0 chr6 10719646 10719957 -171695285 + AluSp SINE Alu 1 312 -1 288 360 85 41 chr6 10720100 10720442 -171694800 + L3 LINE CR1 200 556 -1021 434 271 90 0 chr6 10721821 10721943 -171693299 - MIR SINE MIR -115 147 15 2056 105 20 3 chr6 10722481 10722776 -171692466 + AluSc SINE Alu 1 300 -9 826 180 74 0 chr6 10722845 10723034 -171692208 + Tigger3b DNA MER2_type 1 203 -1028 2755 135 98 25 chr6 10723234 10723782 -171691460 + Tigger3b DNA MER2_type 150 737 -494 1761 166 0 7 chr6 10723782 10724084 -171691158 + AluJo SINE Alu 1 300 -12 2159 72 21 7 chr6 10724185 10724475 -171690767 + AluSg1 SINE Alu 1 294 -15 220 111 44 0 chr6 10724505 10724550 -171690692 + (TA)n Simple_repeat Simple_repeat 1 47 0 1650 205 76 59 chr6 10724611 10724695 -171690547 - MLT1C LTR MaLR 0 467 386 1574 167 7 26 chr6 10724695 10724909 -171690333 + AluJo SINE Alu 12 220 -92 2053 100 3 0 chr6 10724909 10725198 -171690044 + AluSq SINE Alu 5 294 -19 1574 167 7 26 chr6 10725198 10725288 -171689954 + AluJo SINE Alu 220 310 -2 1650 205 76 59 chr6 10725288 10725662 -171689580 - MLT1C LTR MaLR -81 386 1 1847 110 55 31 chr6 10725965 10726257 -171688985 - AluSc SINE Alu -10 299 1 246 385 81 26 chr6 10727262 10727711 -171687531 - L2 LINE L2 -189 3083 2622 2003 74 41 0 chr6 10727791 10728093 -171687149 - AluY SINE Alu 0 313 1 224 311 25 33 chr6 10728119 10728160 -171687082 - MIR SINE MIR -66 196 156 438 20 0 0 chr6 10728160 10728211 -171687031 + (TG)n Simple_repeat Simple_repeat 2 52 0 224 311 25 33 chr6 10728211 10728291 -171686951 - MIR SINE MIR -106 156 76 249 33 0 0 chr6 10728662 10728692 -171686550 + (CA)n Simple_repeat Simple_repeat 2 31 0 2424 57 0 0 chr6 10730055 10730353 -171684889 - AluY SINE Alu -13 298 1 1835 125 18 0 chr6 10730412 10730718 -171684524 - AluSx SINE Alu 0 311 1 885 167 13 7 chr6 10730830 10730980 -171684262 - MER106B DNA MER1_type -908 151 1 183 156 0 0 chr6 10731160 10731192 -171684050 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 452 336 14 22 chr6 10732115 10732338 -171682904 + MIR SINE MIR 40 260 -2 2443 68 0 0 chr6 10732393 10732702 -171682540 + AluSg SINE Alu 1 309 -1 492 240 8 16 chr6 10733070 10733191 -171682051 + L2 LINE L2 3193 3312 -1 365 82 16 16 chr6 10733217 10733278 -171681964 - Alu SINE Alu 0 301 241 336 272 19 29 chr6 10733587 10733690 -171681552 - L1MC/D LINE L1 -1998 5810 5709 2311 98 9 0 chr6 10733690 10734008 -171681234 + LTR8 LTR ERV1 267 587 -104 35 0 0 0 chr6 10734008 10734043 -171681199 + AT_rich Low_complexity Low_complexity 1 35 0 286 274 113 9 chr6 10734215 10734321 -171680921 + L1ME LINE L1 5495 5611 -510 4284 183 58 25 chr6 10734941 10735774 -171679468 + MER21B LTR ERV1 1 860 -3 273 288 0 0 chr6 10736717 10736842 -171678400 + (TG)n Simple_repeat Simple_repeat 1 125 0 2111 122 0 3 chr6 10737155 10737467 -171677775 + AluSx SINE Alu 1 311 -1 1801 125 43 0 chr6 10737814 10738093 -171677149 - AluJo SINE Alu -21 291 1 2168 91 0 7 chr6 10738193 10738502 -171676740 - AluSg SINE Alu -3 307 1 1571 153 0 39 chr6 10738572 10738881 -171676361 + AluJo SINE Alu 12 309 0 1567 142 19 61 chr6 10738946 10739130 -171676112 - AluJo SINE Alu -15 297 130 2228 88 0 0 chr6 10739130 10739424 -171675818 + AluSc SINE Alu 2 295 -14 1567 142 19 61 chr6 10739424 10739549 -171675693 - AluJo SINE Alu -182 130 1 1779 142 28 0 chr6 10740381 10740669 -171674573 + AluJb SINE Alu 1 296 -16 394 241 23 0 chr6 10740681 10740768 -171674474 + L2 LINE L2 3128 3216 -97 308 276 7 97 chr6 10740833 10740934 -171674308 - MIR SINE MIR -12 250 161 1642 161 0 37 chr6 10740934 10741277 -171673965 + AluJo SINE Alu 1 332 0 308 276 7 97 chr6 10741277 10741317 -171673925 - MIR SINE MIR -101 161 119 1484 112 22 9 chr6 10741371 10741603 -171673639 + AluSg/x SINE Alu 69 303 -9 1126 196 222 73 chr6 10741710 10742134 -171673108 - MLT1D LTR MaLR 0 505 19 688 238 38 131 chr6 10742483 10742842 -171672400 + L1MC4 LINE L1 7354 7660 -382 5162 18 0 17 chr6 10742842 10743444 -171671798 - L1PA4 LINE L1 -3 6152 5561 688 238 38 131 chr6 10743444 10743558 -171671684 + L1MC4 LINE L1 7660 7783 -259 286 243 0 0 chr6 10744602 10744676 -171670566 + L1MC4 LINE L1 7969 8042 0 1886 118 0 57 chr6 10744918 10745233 -171670009 - AluSq SINE Alu -16 297 1 334 264 161 7 chr6 10745335 10745490 -171669752 - L2 LINE L2 0 3313 3135 624 239 23 0 chr6 10745593 10745723 -171669519 + AluJo SINE Alu 1 133 -169 904 71 11 44 chr6 10745723 10745858 -171669384 + (GGAA)n Simple_repeat Simple_repeat 1 307 0 904 71 11 44 chr6 10745858 10746041 -171669201 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 1044 148 0 17 chr6 10746129 10746305 -171668937 + AluJo SINE Alu 129 301 -11 278 255 49 59 chr6 10746385 10746487 -171668755 - L2 LINE L2 -1087 2227 2127 1176 205 34 0 chr6 10746488 10746727 -171668515 - MLT1A1 LTR MaLR -3 362 116 1396 270 109 75 chr6 10746727 10746971 -171668271 - L2 LINE L2 -1214 2100 1866 1801 135 14 7 chr6 10746971 10747260 -171667982 + AluJb SINE Alu 2 292 -20 1784 117 67 3 chr6 10747264 10747547 -171667695 + AluSg SINE Alu 3 303 -7 1396 270 109 75 chr6 10747547 10747968 -171667274 - L2 LINE L2 -1450 1864 1407 374 65 0 0 chr6 10747970 10748016 -171667226 + MLT1B LTR MaLR 299 344 -46 2352 238 176 16 chr6 10748160 10749068 -171666174 + L2 LINE L2 333 1385 -1929 1912 113 11 4 chr6 10749070 10749378 -171665864 + AluSx SINE Alu 7 316 0 362 246 94 94 chr6 10750353 10750409 -171664833 + LTR50 LTR ERVL 480 535 -260 1489 216 56 50 chr6 10750409 10750758 -171664484 - MLT1C LTR MaLR 0 467 113 2262 67 0 22 chr6 10750758 10751071 -171664171 - AluSc SINE Alu -3 306 1 1489 216 56 50 chr6 10751071 10751183 -171664059 - MLT1C LTR MaLR -354 113 3 362 246 94 94 chr6 10751183 10751435 -171663807 + LTR50 LTR ERVL 534 788 -7 1897 122 4 0 chr6 10751488 10751766 -171663476 + AluSx SINE Alu 21 299 -13 747 205 43 43 chr6 10751784 10751859 -171663383 + FAM SINE Alu 11 85 -236 2262 140 69 15 chr6 10751859 10752214 -171663028 + MSTA LTR MaLR 1 382 -46 186 43 0 0 chr6 10752214 10752237 -171663005 + (TA)n Simple_repeat Simple_repeat 2 24 0 2262 140 69 15 chr6 10752237 10752287 -171662955 + MSTA LTR MaLR 382 428 0 747 205 43 43 chr6 10752287 10752372 -171662870 + FAM SINE Alu 84 171 -14 1542 216 214 55 chr6 10752591 10752659 -171662583 - MLT1E1 LTR MaLR 0 654 598 1974 122 14 0 chr6 10752659 10752946 -171662296 + AluSx SINE Alu 5 295 -17 1542 216 214 55 chr6 10752946 10753441 -171661801 - MLT1E1 LTR MaLR -56 598 1 545 353 40 15 chr6 10753775 10754047 -171661195 + ERVL LTR ERVL 775 1053 -4711 268 289 103 0 chr6 10754377 10754474 -171660768 - LTR40a LTR ERVL -6 513 407 360 304 47 28 chr6 10754939 10755153 -171660089 - MERVL LTR ERVL -458 5027 4810 644 362 8 0 chr6 10755430 10755687 -171659555 - MERVL LTR ERVL -1047 4438 4180 255 93 0 0 chr6 10755996 10756039 -171659203 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2486 174 6 222 chr6 10756237 10756691 -171658551 + L1M3 LINE L1 4363 4914 -1232 627 80 50 50 chr6 10756691 10756791 -171658451 + AluSg/x SINE Alu 189 288 -22 2486 174 6 222 chr6 10756791 10757261 -171657981 + L1M3 LINE L1 4914 5074 -1072 1695 190 0 3 chr6 10757261 10757556 -171657686 - AluJb SINE Alu -18 294 1 2486 174 6 222 chr6 10757556 10757770 -171657472 + L1M3 LINE L1 5074 5333 -813 647 163 8 47 chr6 10757770 10757870 -171657372 + FLAM_A SINE Alu 5 100 -211 2282 113 80 0 chr6 10757870 10758207 -171657035 + THE1B LTR MaLR 1 364 0 647 163 8 47 chr6 10758207 10758235 -171657007 + FLAM_A SINE Alu 100 128 -183 776 129 8 0 chr6 10758235 10758359 -171656883 + L1M3 LINE L1 5326 5450 -730 2380 286 48 11 chr6 10758879 10759609 -171655633 + ERVL LTR ERVL 287 1043 -3953 1325 220 104 31 chr6 10759666 10760080 -171655162 + MLT1C LTR MaLR 24 467 0 1752 295 48 28 chr6 10760080 10761210 -171654032 + ERVL LTR ERVL 1057 2273 -2723 598 285 69 97 chr6 10761295 10761368 -171653874 + ERVL LTR ERVL 2288 2362 -2634 1972 119 7 7 chr6 10761368 10761662 -171653580 - AluSx SINE Alu -18 294 1 598 285 69 97 chr6 10761662 10762040 -171653202 + ERVL LTR ERVL 2362 2726 -2270 1016 112 0 20 chr6 10762689 10762841 -171652401 + L1PA8 LINE L1 6021 6169 -3 243 156 67 0 chr6 10762846 10762891 -171652351 + MER58 DNA MER1_type 2373 2420 0 2173 94 0 10 chr6 10763042 10763341 -171651901 + AluSx SINE Alu 1 296 -16 1551 136 97 13 chr6 10763341 10763650 -171651592 + MER46B DNA MER2_type 27 236 0 5672 94 36 17 chr6 10763674 10764489 -171650753 - L1PA11 LINE L1 -2 6172 5343 2093 103 3 7 chr6 10764538 10764839 -171650403 - AluY SINE Alu -11 300 1 185 307 176 39 chr6 10764892 10765045 -171650197 + MIR SINE MIR 28 201 -61 338 326 39 8 chr6 10765414 10765543 -171649699 + AluJ SINE Alu 11 143 -159 5402 191 69 76 chr6 10765558 10767139 -171648103 - pTR5 LTR ERV1 -156 2173 31 743 194 84 19 chr6 10767140 10767295 -171647947 + AluJ SINE Alu 143 307 -5 1885 102 16 60 chr6 10767858 10768172 -171647070 + AluSx SINE Alu 5 304 -8 187 264 125 28 chr6 10768194 10768266 -171646976 + MIR SINE MIR 73 151 -111 810 174 12 12 chr6 10768267 10768428 -171646814 - FRAM SINE Alu -15 161 1 2568 214 104 6 chr6 10768440 10769112 -171646130 - L1MD2 LINE L1 -1 6358 5621 2114 99 17 3 chr6 10769614 10769907 -171645335 - AluSx SINE Alu -14 298 2 996 202 32 40 chr6 10769928 10770175 -171645067 + MLT2B1 LTR ERVL 2 246 -274 559 221 140 0 chr6 10770186 10770322 -171644920 - AluJo SINE Alu -41 271 117 1531 146 59 7 chr6 10770322 10770610 -171644632 + AluSq SINE Alu 1 303 -10 4227 152 93 56 chr6 10770709 10772156 -171643086 - pTR5 LTR ERV1 0 2438 743 281 198 23 23 chr6 10772542 10772628 -171642614 + (TA)n Simple_repeat Simple_repeat 1 86 0 200 200 0 0 chr6 10772744 10772789 -171642453 + (ATG)n Simple_repeat Simple_repeat 3 47 0 271 307 99 61 chr6 10772796 10772874 -171642368 - MIR SINE MIR -41 221 147 2304 144 15 15 chr6 10772874 10773264 -171641978 - MLT1B LTR MaLR 0 390 1 271 307 99 61 chr6 10773264 10773397 -171641845 - MIR SINE MIR -115 147 2 1915 141 3 95 chr6 10773912 10774281 -171640961 + MER1B DNA MER1_type 2 336 -1 2231 97 0 0 chr6 10774689 10774987 -171640255 - AluSx SINE Alu -14 298 1 321 292 102 15 chr6 10775209 10775341 -171639901 + MIR SINE MIR 2 143 -69 1474 200 143 83 chr6 10775345 10776096 -171639146 + pTR5 LTR ERV1 744 2050 -388 683 210 127 63 chr6 10776342 10776662 -171638580 + LTR12 LTR ERV1 236 690 -24 766 192 58 0 chr6 10776663 10776819 -171638423 - AluSq SINE Alu -15 298 134 1312 199 15 7 chr6 10776835 10777107 -171638135 - AluSq SINE Alu -39 274 1 576 202 57 16 chr6 10777109 10777233 -171638009 - AluJo/FLAM SINE Alu -171 131 3 1707 127 21 25 chr6 10777594 10777877 -171637365 + AluSx SINE Alu 1 282 -30 182 125 0 50 chr6 10779190 10779230 -171636012 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 2155 102 3 0 chr6 10779388 10779682 -171635560 - AluSq SINE Alu -18 295 1 2916 212 25 25 chr6 10780435 10781119 -171634123 - L1MD3 LINE L1 0 7995 7312 406 319 28 7 chr6 10781370 10781514 -171633728 + MIR SINE MIR 112 258 -4 2050 118 10 0 chr6 10781543 10781847 -171633395 + AluSg SINE Alu 1 307 -3 901 253 42 4 chr6 10781867 10782104 -171633138 + MIR SINE MIR 17 262 0 2311 94 0 0 chr6 10782224 10782533 -171632709 - AluY SINE Alu -2 309 1 1959 127 0 10 chr6 10782571 10782871 -171632371 - AluSx SINE Alu -15 297 1 1282 247 49 45 chr6 10782950 10783373 -171631869 - L1ME2 LINE L1 -6 6227 5800 1435 141 130 0 chr6 10783373 10783635 -171631607 - AluSg1 SINE Alu -13 296 1 1282 247 49 45 chr6 10783635 10783725 -171631517 - L1ME2 LINE L1 -433 5800 5712 784 244 39 19 chr6 10783726 10783931 -171631311 - MER82 DNA MER2_type -1 652 444 2118 92 7 16 chr6 10783958 10784264 -171630978 + AluSx SINE Alu 1 303 -9 254 182 36 0 chr6 10784379 10784434 -171630808 + L1M4 LINE L1 2774 2830 -3316 383 237 32 0 chr6 10784564 10784657 -171630585 - MER82 DNA MER2_type -557 96 1 1032 271 37 9 chr6 10784657 10784978 -171630264 - L1ME2 LINE L1 -525 5710 5381 520 54 68 0 chr6 10785020 10785094 -171630148 + L1PA11 LINE L1 6095 6173 -1 1499 244 13 18 chr6 10785096 10785546 -171629696 - L1ME2 LINE L1 -2925 3290 2843 696 129 54 82 chr6 10785549 10785696 -171629546 - MSTB2 LTR MaLR -55 402 260 434 203 16 47 chr6 10785725 10785796 -171629446 - L1ME2 LINE L1 -3388 2827 2760 2066 122 3 0 chr6 10785796 10786100 -171629142 - AluSx SINE Alu -7 305 1 434 203 16 47 chr6 10786100 10786156 -171629086 - L1ME2 LINE L1 -3455 2760 2704 1710 262 27 10 chr6 10786208 10786693 -171628549 - L1ME2 LINE L1 -5780 616 124 1897 151 0 7 chr6 10787379 10787678 -171627564 + AluJb SINE Alu 1 297 -15 864 149 6 43 chr6 10787771 10787932 -171627310 + AluJb SINE Alu 143 297 -15 326 298 48 0 chr6 10787943 10788047 -171627195 + MER103 DNA DNA 13 121 -45 406 227 9 18 chr6 10788696 10788806 -171626436 - L1ME4a LINE L1 -67 6054 5946 2133 111 0 0 chr6 10788839 10789136 -171626106 + AluSx SINE Alu 1 297 -15 655 216 0 8 chr6 10789240 10789365 -171625877 + FLAM_C SINE Alu 2 125 -18 2287 105 0 0 chr6 10789816 10790120 -171625122 + AluSx SINE Alu 1 304 -8 221 56 0 28 chr6 10790120 10790156 -171625086 + (TA)n Simple_repeat Simple_repeat 1 35 0 1000 212 37 8 chr6 10790319 10790560 -171624682 + L1MB7 LINE L1 5928 6175 -9 346 326 17 65 chr6 10790584 10790825 -171624417 - MIR SINE MIR -24 238 12 186 179 0 0 chr6 10790908 10790936 -171624306 - L2 LINE L2 -21 3251 3224 977 184 0 22 chr6 10790949 10791128 -171624114 - FAM SINE Alu 0 175 1 1179 161 5 0 chr6 10791210 10791403 -171623839 + MER20 DNA MER1_type 26 219 0 1567 168 20 7 chr6 10791581 10791878 -171623364 + L1MB2 LINE L1 5864 6164 -7 2138 108 0 7 chr6 10791893 10792200 -171623042 + AluSx SINE Alu 5 309 -3 307 53 0 0 chr6 10792433 10792471 -171622771 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 269 285 122 16 chr6 10792987 10793110 -171622132 + MIR3 SINE MIR 56 191 -17 27 0 0 0 chr6 10793143 10793170 -171622072 + AT_rich Low_complexity Low_complexity 1 27 0 2366 137 6 3 chr6 10793212 10793571 -171621671 - MER46B DNA MER2_type 0 236 2 2063 130 0 0 chr6 10793654 10793953 -171621289 + AluSx SINE Alu 1 299 -13 692 308 71 5 chr6 10794650 10794874 -171620368 - MIR SINE MIR -3 259 21 1576 209 30 6 chr6 10795022 10795352 -171619890 - MER58B DNA MER1_type -3 338 1 2369 153 37 19 chr6 10795453 10795884 -171619358 + L1MA6 LINE L1 5862 6300 0 286 333 116 21 chr6 10795918 10796107 -171619135 - L2 LINE L2 -113 3159 2953 780 143 42 0 chr6 10796139 10796258 -171618984 + FLAM_C SINE Alu 2 125 -18 193 0 94 0 chr6 10796263 10796295 -171618947 + T-rich Low_complexity Low_complexity 1 35 0 2096 73 0 4 chr6 10796409 10796684 -171618558 - AluY SINE Alu -20 291 18 362 266 32 63 chr6 10796766 10796850 -171618392 - L2 LINE L2 0 3313 3235 2131 100 3 3 chr6 10796850 10797150 -171618092 + AluSq SINE Alu 1 300 -13 362 266 32 63 chr6 10797150 10797223 -171618019 - L2 LINE L2 -78 3235 3161 25 0 0 0 chr6 10801388 10801413 -171613829 + GC_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr6 10802015 10802035 -171613207 + (T)n Simple_repeat Simple_repeat 1 20 0 2048 94 4 0 chr6 10809405 10809682 -171605560 + AluSg SINE Alu 1 278 -32 24 67 0 0 chr6 10811593 10811638 -171603604 + AT_rich Low_complexity Low_complexity 1 45 0 33 25 0 0 chr6 10813226 10813266 -171601976 + AT_rich Low_complexity Low_complexity 1 40 0 200 35 35 0 chr6 10813758 10813787 -171601455 + (GA)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr6 10813986 10814034 -171601208 + AT_rich Low_complexity Low_complexity 1 48 0 24 63 0 16 chr6 10814537 10814587 -171600655 + AT_rich Low_complexity Low_complexity 1 51 -11 190 28 28 56 chr6 10814587 10814623 -171600619 + (TTG)n Simple_repeat Simple_repeat 2 36 0 24 63 0 16 chr6 10814623 10814635 -171600607 + AT_rich Low_complexity Low_complexity 51 62 0 294 143 0 0 chr6 10814817 10814866 -171600376 + (CAG)n Simple_repeat Simple_repeat 3 51 0 225 0 0 0 chr6 10816438 10816463 -171598779 + (TC)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr6 10816462 10816487 -171598755 + (TG)n Simple_repeat Simple_repeat 2 26 0 34 24 0 0 chr6 10821007 10821048 -171594194 + GC_rich Low_complexity Low_complexity 1 41 0 222 118 0 0 chr6 10824028 10824062 -171591180 + (T)n Simple_repeat Simple_repeat 1 34 0 210 236 0 0 chr6 10828720 10828775 -171586467 + (CGAG)n Simple_repeat Simple_repeat 2 56 0 233 224 0 17 chr6 10828843 10828901 -171586341 + GA-rich Low_complexity Low_complexity 2 58 0 400 154 11 11 chr6 10828960 10829051 -171586191 + GA-rich Low_complexity Low_complexity 1 91 0 271 184 0 0 chr6 10829067 10829116 -171586126 + G-rich Low_complexity Low_complexity 5 53 0 255 31 0 0 chr6 10831004 10831036 -171584206 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 762 130 0 0 chr6 10831630 10831761 -171583481 + (GGA)n Simple_repeat Simple_repeat 3 133 0 23 0 0 0 chr6 10835727 10835750 -171579492 + GC_rich Low_complexity Low_complexity 1 23 0 240 188 0 0 chr6 10836750 10836798 -171578444 + (CA)n Simple_repeat Simple_repeat 2 49 0 438 301 133 35 chr6 10838197 10838400 -171576842 + MIR SINE MIR 31 253 -9 387 0 0 0 chr6 10840138 10840181 -171575061 + (TG)n Simple_repeat Simple_repeat 2 44 0 419 301 18 0 chr6 10841568 10841681 -171573561 + MER5B DNA MER1_type 1 115 -63 388 168 0 62 chr6 10845510 10845623 -171569619 + L1PA11 LINE L1 6068 6173 -1 180 306 16 16 chr6 10846618 10846680 -171568562 + L3 LINE CR1 1513 1574 -3 2014 126 49 0 chr6 10847012 10847297 -171567945 - AluSx SINE Alu -13 299 1 396 256 0 0 chr6 10847361 10847447 -171567795 + MLT1L LTR MaLR 69 154 -461 481 310 12 23 chr6 10848042 10848213 -171567029 + MIR3 SINE MIR 25 193 -15 180 205 0 51 chr6 10848179 10848218 -171567024 + L3 LINE CR1 1535 1571 -6 * 1686 177 27 17 chr6 10848385 10848685 -171566557 - AluJo SINE Alu -9 303 1 2420 85 0 3 chr6 10848936 10849241 -171566001 - AluSq SINE Alu -8 305 2 430 242 0 0 chr6 10849303 10849402 -171565840 - FLAM_C SINE Alu 0 143 45 750 279 135 53 chr6 10849734 10850212 -171565030 - L2 LINE L2 0 3313 2757 2446 81 0 0 chr6 10850212 10850507 -171564735 + AluSq SINE Alu 1 295 -18 750 279 135 53 chr6 10850507 10850661 -171564581 - L2 LINE L2 -556 2757 2617 776 266 76 10 chr6 10850665 10850955 -171564287 - L2 LINE L2 -1109 2205 1897 209 287 87 17 chr6 10851039 10851143 -171564099 + MIR SINE MIR 92 206 -56 1480 186 54 61 chr6 10851143 10851535 -171563707 - MLT1B LTR MaLR -1 389 1 2406 68 0 0 chr6 10851855 10852164 -171563078 - AluSg SINE Alu 0 309 1 271 75 0 0 chr6 10852690 10852730 -171562512 - Alu SINE Alu -4 297 258 1323 51 0 6 chr6 10852730 10852886 -171562356 - AluY SINE Alu -156 155 1 949 291 75 0 chr6 10852888 10853259 -171561983 + L1MC4a LINE L1 5514 5912 -1896 851 176 0 0 chr6 10853425 10853556 -171561686 - FLAM_C SINE Alu -2 131 1 1944 142 0 10 chr6 10853569 10853895 -171561347 - AluSx SINE Alu 0 323 1 602 242 52 41 chr6 10853898 10854340 -171560902 - L1M4 LINE L1 -2848 3298 2852 230 163 0 0 chr6 10854365 10854408 -171560834 - L1MA9 LINE L1 -10 6302 6260 586 227 67 0 chr6 10854510 10854660 -171560582 - MLT1J LTR MaLR -113 398 239 266 283 11 33 chr6 10854686 10854778 -171560464 - MLT1J LTR MaLR -338 173 84 1589 160 93 4 chr6 10854827 10855096 -171560146 + AluJb SINE Alu 4 296 -16 660 136 0 97 chr6 10855487 10855641 -171559601 - L1MA9 LINE L1 -37 6275 6137 2316 113 0 0 chr6 10855642 10855943 -171559299 - AluSx SINE Alu -11 301 1 2386 106 0 0 chr6 10856565 10856867 -171558375 + AluSx SINE Alu 1 302 -10 184 338 26 19 chr6 10857179 10857333 -171557909 - L2 LINE L2 -1635 1679 1525 2337 89 21 0 chr6 10857543 10857834 -171557408 + AluSc SINE Alu 2 298 -11 214 282 90 13 chr6 10858212 10858290 -171556952 - L2 LINE L2 -1 3271 3188 995 191 0 15 chr6 10858300 10858504 -171556738 + AluSq SINE Alu 1 201 -112 2275 99 3 0 chr6 10859508 10859792 -171555450 + AluSq SINE Alu 1 285 -28 22 0 0 0 chr6 10859794 10859816 -171555426 + AT_rich Low_complexity Low_complexity 1 22 0 182 315 0 0 chr6 10860951 10861005 -171554237 + MIR SINE MIR 86 139 -123 201 167 0 0 chr6 10861063 10861099 -171554143 + (TAA)n Simple_repeat Simple_repeat 3 38 0 2514 65 7 10 chr6 10861157 10861464 -171553778 + AluY SINE Alu 1 306 -5 1597 173 83 4 chr6 10861594 10861860 -171553382 - AluJb SINE Alu -15 297 11 32 57 0 0 chr6 10861932 10861985 -171553257 + AT_rich Low_complexity Low_complexity 1 53 0 2265 114 0 13 chr6 10862029 10862337 -171552905 + AluSx SINE Alu 2 305 -7 396 194 37 19 chr6 10862363 10862471 -171552771 - Charlie2a DNA MER1_type 0 2862 2753 659 167 107 12 chr6 10862476 10862644 -171552598 - Charlie2a DNA MER1_type -1851 1011 828 270 220 0 0 chr6 10862670 10862729 -171552513 - Charlie2a DNA MER1_type -2732 130 72 192 77 0 0 chr6 10862733 10862759 -171552483 + (A)n Simple_repeat Simple_repeat 1 26 0 1599 131 100 41 chr6 10862998 10863242 -171552000 - MER44D DNA MER2_type -1882 609 381 2232 96 14 3 chr6 10863242 10863534 -171551708 - AluSx SINE Alu -17 295 1 1599 131 100 41 chr6 10863534 10863609 -171551633 - MER44D DNA MER2_type -2110 381 1 246 156 0 0 chr6 10863772 10863817 -171551425 - Charlie2a DNA MER1_type -2650 132 88 2153 170 115 3 chr6 10864318 10864701 -171550541 + MSTB LTR MaLR 1 426 0 183 42 0 0 chr6 10864707 10864731 -171550511 + (CA)n Simple_repeat Simple_repeat 2 25 0 2313 131 0 0 chr6 10864838 10865144 -171550098 - AluSx SINE Alu -6 306 1 272 239 60 0 chr6 10865718 10865785 -171549457 + MIR SINE MIR 78 148 -114 230 148 74 19 chr6 10865979 10866033 -171549209 + MLT1L LTR MaLR 507 563 -52 2255 96 4 0 chr6 10866156 10866461 -171548781 - AluSp SINE Alu 0 306 1 721 320 107 35 chr6 10866663 10866938 -171548304 - L2 LINE L2 -6 3266 2949 957 32 113 0 chr6 10866938 10867062 -171548180 + MER85 DNA T2_type 1 138 -1 721 320 107 35 chr6 10867062 10867243 -171547999 - L2 LINE L2 -323 2949 2782 2483 103 0 0 chr6 10867369 10867681 -171547561 + AluSx SINE Alu 1 312 0 2289 115 6 10 chr6 10868196 10868508 -171546734 - AluSq SINE Alu -2 311 1 342 291 64 55 chr6 10868587 10869044 -171546198 + L1MEd LINE L1 1094 1539 -4590 2404 91 7 0 chr6 10869044 10869353 -171545889 + AluY SINE Alu 1 311 0 342 291 64 55 chr6 10869353 10869444 -171545798 + L1MEd LINE L1 1539 1628 -4501 1132 252 91 11 chr6 10869687 10870040 -171545202 - L1MC4a LINE L1 -1017 6791 6411 2305 111 0 0 chr6 10870044 10870341 -171544901 + AluSx SINE Alu 1 297 -15 402 240 32 19 chr6 10870371 10870525 -171544717 - L1MEd LINE L1 -4974 1145 990 327 254 167 9 chr6 10870784 10870898 -171544344 - L1MEd LINE L1 -5426 693 562 233 176 0 39 chr6 10871200 10871251 -171543991 + CT-rich Low_complexity Low_complexity 2 50 0 438 188 83 56 chr6 10871969 10872113 -171543129 + L1MA7 LINE L1 6140 6287 -4 2062 131 3 3 chr6 10872176 10872466 -171542776 + AluSx SINE Alu 1 290 -22 956 112 15 0 chr6 10872474 10872608 -171542634 - LTR8 LTR ERV1 -544 147 12 2190 108 0 0 chr6 10872612 10872909 -171542333 + AluY SINE Alu 1 297 -14 275 234 66 66 chr6 10872978 10873205 -171542037 + L1 LINE L1 5164 5390 -756 1652 194 36 3 chr6 10873261 10873590 -171541652 + MER58B DNA MER1_type 1 340 -1 2272 87 10 7 chr6 10873797 10874095 -171541147 - AluSc SINE Alu -10 299 1 2438 88 0 0 chr6 10874097 10874403 -171540839 - AluSc SINE Alu -3 306 1 207 322 50 94 chr6 10874667 10874869 -171540373 + L2 LINE L2 3009 3201 -71 3171 126 50 116 chr6 10874871 10875607 -171539635 + LTR12 LTR ERV1 1 688 0 602 179 0 0 chr6 10875613 10875708 -171539534 + LTR12 LTR ERV1 620 714 0 2419 73 23 0 chr6 10876431 10876731 -171538511 - AluSp SINE Alu -6 307 1 270 179 36 0 chr6 10876798 10876854 -171538388 - MLT1J LTR MaLR -344 167 110 487 268 83 62 chr6 10878238 10878591 -171536651 - MLT1L LTR MaLR -83 532 95 2231 117 0 0 chr6 10879730 10880028 -171535214 + AluSx SINE Alu 1 298 -14 2043 125 3 37 chr6 10882242 10882563 -171532679 - AluSg SINE Alu 0 310 1 2181 97 3 23 chr6 10882805 10883114 -171532128 - AluSq SINE Alu -10 303 1 1859 146 42 3 chr6 10884064 10884351 -171530891 + AluSx SINE Alu 1 298 -14 250 231 62 15 chr6 10884629 10884694 -171530548 - L2 LINE L2 -4 3309 3242 214 154 19 58 chr6 10885546 10885598 -171529644 + MIR SINE MIR 81 130 -78 812 150 8 8 chr6 10885753 10885886 -171529356 + FLAM_A SINE Alu 1 133 0 2080 131 24 0 chr6 10885965 10886263 -171528979 - AluSx SINE Alu -7 305 1 2348 90 3 10 chr6 10886277 10886589 -171528653 - AluSp SINE Alu 0 313 4 2226 108 13 3 chr6 10886596 10886901 -171528341 - AluSx SINE Alu -4 308 1 322 235 67 40 chr6 10886932 10887081 -171528161 + L1ME4a LINE L1 5968 6120 -1 2113 102 14 10 chr6 10887804 10888099 -171527143 + AluSx SINE Alu 1 296 -16 324 226 157 57 chr6 10888132 10888291 -171526951 + L1ME LINE L1 5525 5699 -422 1363 158 11 46 chr6 10888359 10888390 -171526852 + AluSp SINE Alu 23 54 -259 2365 68 3 3 chr6 10888390 10888683 -171526559 + AluY SINE Alu 1 293 -18 1363 158 11 46 chr6 10888683 10888936 -171526306 + AluSp SINE Alu 54 297 -16 706 251 96 9 chr6 10890070 10890289 -171524953 - MIR SINE MIR -6 256 19 1454 183 29 18 chr6 10892460 10892770 -171522472 + AluJo SINE Alu 1 313 0 287 188 26 145 chr6 10893238 10893269 -171521973 - MIR SINE MIR 0 262 229 2060 128 0 46 chr6 10893269 10893596 -171521646 + AluJb SINE Alu 1 312 0 360 0 0 0 chr6 10893600 10893640 -171521602 + (TA)n Simple_repeat Simple_repeat 2 41 0 287 188 26 145 chr6 10893640 10893720 -171521522 - MIR SINE MIR -36 226 160 1821 134 144 0 chr6 10894141 10894440 -171520802 + Ricksha DNA DNA 9 350 -2896 666 267 61 58 chr6 10894508 10894575 -171520667 - L2 LINE L2 -508 2806 2741 2400 75 0 3 chr6 10894575 10894868 -171520374 - AluY SINE Alu -19 292 1 2272 91 14 3 chr6 10894868 10895165 -171520077 - AluSq SINE Alu -13 300 1 666 267 61 58 chr6 10895165 10895373 -171519869 - L2 LINE L2 -572 2742 2529 687 206 24 41 chr6 10895381 10895551 -171519691 + LTR9 LTR ERV1 446 612 0 722 157 64 0 chr6 10895576 10895722 -171519520 + HUERS-P3b LTR ERV1 3616 4588 -1242 * 1108 136 12 0 chr6 10895719 10895881 -171519361 + HUERS-P3b LTR ERV1 5894 6057 -1361 1094 147 28 0 chr6 10895880 10896048 -171519194 + HUERS-P3b LTR ERV1 3308 6617 -801 * 576 324 138 20 chr6 10896056 10896365 -171518877 - L2 LINE L2 -783 2531 2260 1127 184 29 19 chr6 10896365 10896435 -171518807 - MER3 DNA MER1_type 0 209 141 1586 161 97 7 chr6 10896435 10896714 -171518528 + AluSx SINE Alu 1 304 -8 1127 184 29 19 chr6 10896714 10896850 -171518392 - MER3 DNA MER1_type -68 141 1 576 324 138 20 chr6 10896850 10897194 -171518048 - L2 LINE L2 -1054 2260 1801 563 129 0 0 chr6 10897313 10897398 -171517844 + MER53 DNA DNA 1 85 -104 7481 136 26 11 chr6 10897401 10897687 -171517555 - Tigger3b DNA MER2_type -1797 1231 951 2330 117 0 0 chr6 10897687 10897996 -171517246 + AluSp SINE Alu 1 309 -4 7481 136 26 11 chr6 10897996 10898241 -171517001 - Tigger3b DNA MER2_type -2077 951 711 246 32 0 0 chr6 10898241 10898272 -171516970 + (TA)n Simple_repeat Simple_repeat 1 31 0 3864 68 4 19 chr6 10898273 10898789 -171516453 - L1PA8 LINE L1 -13 6159 5652 7481 136 26 11 chr6 10898789 10899464 -171515778 - Tigger3b DNA MER2_type -2316 712 4 358 161 138 0 chr6 10899467 10899554 -171515688 + MER53 DNA DNA 87 185 -4 21 0 0 0 chr6 10899680 10899701 -171515541 + AT_rich Low_complexity Low_complexity 1 21 0 706 207 18 18 chr6 10900783 10900947 -171514295 + FAM SINE Alu 1 164 -11 273 267 139 10 chr6 10901605 10901706 -171513536 - L2 LINE L2 -7 3306 3193 2381 93 0 10 chr6 10901720 10902030 -171513212 - AluSx SINE Alu -5 307 1 2218 97 24 0 chr6 10902039 10902329 -171512913 - AluY SINE Alu -14 297 1 21 36 0 0 chr6 10902655 10902683 -171512559 + AT_rich Low_complexity Low_complexity 1 28 0 4465 182 32 23 chr6 10903004 10903076 -171512166 + L1MC3 LINE L1 6806 6876 -909 2539 176 42 33 chr6 10903076 10903180 -171512062 - MER66B LTR ERV1 0 486 384 2123 111 10 0 chr6 10903180 10903469 -171511773 - AluSx SINE Alu -20 292 1 2539 176 42 33 chr6 10903469 10903846 -171511396 - MER66B LTR ERV1 -102 384 1 4465 182 32 23 chr6 10903846 10904635 -171510607 + L1MC3 LINE L1 6876 7679 -106 2457 129 67 5 chr6 10904635 10905038 -171510204 + MSTA LTR MaLR 1 428 0 4465 182 32 23 chr6 10905038 10905136 -171510106 + L1MC3 LINE L1 7679 7775 -10 2225 114 0 3 chr6 10905136 10905442 -171509800 + AluSq SINE Alu 1 305 -8 1542 159 3 28 chr6 10905451 10905741 -171509501 + L1MA3 LINE L1 5798 6080 -225 1354 207 45 25 chr6 10905741 10906054 -171509188 - MLT2C2 LTR ERVL -39 481 120 2199 101 13 16 chr6 10906776 10907084 -171508158 - AluSp SINE Alu -6 307 1 2359 104 0 0 chr6 10907100 10907407 -171507835 - AluSc SINE Alu -2 307 1 332 117 6 17 chr6 10907655 10907697 -171507545 - MLT2C1 LTR ERVL -5 657 616 438 20 0 0 chr6 10907697 10907748 -171507494 + (TG)n Simple_repeat Simple_repeat 2 52 0 332 117 6 17 chr6 10907748 10907776 -171507466 - MLT2C1 LTR ERVL -46 616 474 2140 164 25 3 chr6 10907861 10908213 -171507029 - MLT2C1 LTR ERVL -40 480 1 704 323 48 20 chr6 10908241 10908594 -171506648 + L2 LINE L2 2947 3309 -4 485 327 108 35 chr6 10908612 10909010 -171506232 - L3 LINE CR1 -156 1421 995 2089 122 20 10 chr6 10909011 10909178 -171506064 - AluSq SINE Alu -7 306 133 2267 81 42 0 chr6 10909178 10909463 -171505779 - AluSg1 SINE Alu -12 297 1 2089 122 20 10 chr6 10909463 10909598 -171505644 - AluSq SINE Alu -180 133 1 269 209 0 47 chr6 10909729 10909877 -171505365 + G-rich Low_complexity Low_complexity 3 143 0 1287 139 23 59 chr6 10909877 10910168 -171505074 - MER52C LTR ERV1 -772 506 91 710 221 27 72 chr6 10910168 10910390 -171504852 - L2 LINE L2 -895 2419 2208 4805 43 33 41 chr6 10911024 10912077 -171503165 - MER11A LTR ERVK 0 1266 1 1072 277 28 52 chr6 10912247 10912393 -171502849 + L1ME LINE L1 4 152 -5918 1837 114 103 4 chr6 10912393 10912664 -171502578 + AluSx SINE Alu 1 298 -14 1072 277 28 52 chr6 10912664 10912943 -171502299 + L1ME LINE L1 152 419 -5651 783 253 42 35 chr6 10913210 10913661 -171501581 + L1ME LINE L1 531 984 -5086 2315 84 0 29 chr6 10913661 10913969 -171501273 + AluSc SINE Alu 1 299 -10 24 32 0 0 chr6 10914064 10914095 -171501147 + AT_rich Low_complexity Low_complexity 1 31 0 2338 102 3 0 chr6 10914925 10915228 -171500014 + AluSp SINE Alu 1 304 -9 2667 130 28 35 chr6 10915367 10915464 -171499778 - L1MB1 LINE L1 -153 6036 5940 1959 143 0 3 chr6 10915464 10915751 -171499491 - AluJb SINE Alu -16 296 11 2667 130 28 35 chr6 10915751 10916085 -171499157 - L1MB1 LINE L1 -249 5940 5606 2364 87 0 19 chr6 10916085 10916397 -171498845 - AluSx SINE Alu -4 308 3 2667 130 28 35 chr6 10916397 10916425 -171498817 - L1MB1 LINE L1 -583 5606 5579 1453 143 4 39 chr6 10916427 10916706 -171498536 + L1MC3 LINE L1 7514 7782 -3 1931 108 73 14 chr6 10916927 10917214 -171498028 + AluSx SINE Alu 1 304 -8 2340 105 3 6 chr6 10917214 10917528 -171497714 + AluSq SINE Alu 1 313 0 215 268 24 37 chr6 10918263 10918345 -171496897 + L3 LINE CR1 1230 1310 -267 2516 83 0 0 chr6 10918360 10918662 -171496580 - AluSx SINE Alu -10 302 1 719 285 88 53 chr6 10918669 10919044 -171496198 - MLT1K LTR MaLR -16 572 185 2164 128 0 7 chr6 10919077 10919381 -171495861 + AluSx SINE Alu 1 302 -10 308 276 89 8 chr6 10919463 10919586 -171495656 + L3 LINE CR1 1336 1468 -109 249 257 22 44 chr6 10919665 10919801 -171495441 + L2 LINE L2 2553 2685 -629 788 281 106 13 chr6 10919816 10920118 -171495124 - L2 LINE L2 0 3313 2984 225 83 0 28 chr6 10920153 10920189 -171495053 - L1MA8 LINE L1 -475 5816 5782 2691 135 15 36 chr6 10920190 10920271 -171494971 + L1MA8 LINE L1 5827 5908 -383 2087 136 0 19 chr6 10920271 10920579 -171494663 + AluSx SINE Alu 1 302 -10 2691 135 15 36 chr6 10920579 10920970 -171494272 + L1MA8 LINE L1 5908 6289 -2 213 167 0 0 chr6 10920973 10921027 -171494215 + T-rich Low_complexity Low_complexity 1 54 0 257 326 0 0 chr6 10921046 10921132 -171494110 - L1MC4 LINE L1 -1005 7037 6952 2187 123 0 19 chr6 10921248 10921556 -171493686 - AluSq SINE Alu -11 302 1 454 287 60 64 chr6 10921635 10922092 -171493150 + L1MEd LINE L1 1094 1471 -4658 2342 87 7 7 chr6 10922092 10922401 -171492841 + AluY SINE Alu 1 309 -2 454 287 60 64 chr6 10922401 10922521 -171492721 + L1MEd LINE L1 1471 1590 -4539 1128 257 89 9 chr6 10922735 10923073 -171492169 - L1MC4a LINE L1 -1017 6791 6427 2283 111 0 0 chr6 10923092 10923389 -171491853 + AluSx SINE Alu 1 297 -15 416 240 32 19 chr6 10923419 10923573 -171491669 - L1MEd LINE L1 -4974 1145 990 476 259 152 32 chr6 10923598 10923946 -171491296 - L1MEd LINE L1 -5168 951 562 233 176 0 39 chr6 10924248 10924299 -171490943 + CT-rich Low_complexity Low_complexity 2 50 0 2296 89 0 29 chr6 10925090 10925405 -171489837 - AluSp SINE Alu -7 306 1 2214 96 0 0 chr6 10925422 10925704 -171489538 - AluSx SINE Alu -26 286 5 3041 147 4 7 chr6 10925720 10926184 -171489058 - L1PB3 LINE L1 -4 6150 5688 2026 96 0 4 chr6 10929945 10930215 -171485027 + AluSx SINE Alu 1 269 -43 2323 157 123 26 chr6 10930215 10930679 -171484563 + LTR22 LTR ERVK 1 509 0 222 37 0 0 chr6 10930699 10930726 -171484516 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2015 137 0 0 chr6 10931865 10932183 -171483059 - AluSx SINE Alu 0 318 1 1194 156 5 10 chr6 10932507 10932706 -171482536 - Tigger1 DNA MER2_type -4 2414 2217 1219 158 0 0 chr6 10932707 10932891 -171482351 + AluSx SINE Alu 1 184 -128 3153 140 16 26 chr6 10932897 10933236 -171482006 - Tigger1 DNA MER2_type -187 2231 1897 1429 91 73 170 chr6 10933236 10933565 -171481677 + AluSx SINE Alu 1 297 -15 3153 140 16 26 chr6 10933565 10933726 -171481516 - Tigger1 DNA MER2_type -521 1897 1736 1797 152 21 0 chr6 10933746 10934036 -171481206 - AluJo SINE Alu -16 296 1 22 0 0 0 chr6 10934525 10934547 -171480695 + AT_rich Low_complexity Low_complexity 1 22 0 2290 81 3 0 chr6 10935043 10935326 -171479916 + AluSg SINE Alu 1 284 -26 348 83 0 0 chr6 10935342 10935390 -171479852 + (CA)n Simple_repeat Simple_repeat 1 48 0 2037 102 76 0 chr6 10935390 10935665 -171479577 + AluSx SINE Alu 1 296 -16 806 235 0 6 chr6 10935915 10936094 -171479148 - AluJb SINE Alu -6 306 129 1293 144 25 38 chr6 10936244 10936482 -171478760 - MLT1F LTR MaLR -2 534 314 1323 162 9 0 chr6 10936482 10936698 -171478544 - MLT1B LTR MaLR -4 386 169 1120 201 0 19 chr6 10936702 10936911 -171478331 - AluJo SINE Alu -21 291 87 992 173 6 0 chr6 10936911 10937079 -171478163 - MLT1B LTR MaLR -221 169 1 549 208 0 104 chr6 10937079 10937223 -171478019 - MLT1F LTR MaLR -222 320 192 1916 154 3 25 chr6 10937525 10937844 -171477398 + AluJb SINE Alu 1 312 0 2297 84 10 0 chr6 10938378 10938676 -171476566 - AluSp SINE Alu -12 301 1 266 179 36 0 chr6 10938743 10938799 -171476443 - MLT1J LTR MaLR -344 167 110 325 325 140 61 chr6 10939263 10940180 -171475062 - L2 LINE L2 -337 2977 1989 488 268 83 62 chr6 10940183 10940536 -171474706 - MLT1L LTR MaLR -83 532 95 2214 117 0 0 chr6 10941676 10941974 -171473268 + AluSx SINE Alu 1 298 -14 2319 101 0 0 chr6 10943037 10943334 -171471908 - AluSp SINE Alu -16 297 1 2580 53 0 0 chr6 10943337 10943640 -171471602 - AluY SINE Alu -8 303 1 1178 155 0 0 chr6 10943645 10943813 -171471429 - FAM SINE Alu -3 172 5 2160 125 0 0 chr6 10943930 10944227 -171471015 + AluSx SINE Alu 1 297 -15 2093 149 0 0 chr6 10944257 10944565 -171470677 + AluJb SINE Alu 1 308 -4 493 273 30 23 chr6 10945006 10945138 -171470104 - MIR SINE MIR -128 134 2 2457 63 0 10 chr6 10945372 10945675 -171469567 - AluY SINE Alu -11 300 1 2160 75 0 8 chr6 10945889 10946156 -171469086 - AluSg SINE Alu -45 265 1 2315 110 0 0 chr6 10946874 10947174 -171468068 - AluSx SINE Alu -12 300 1 216 0 0 0 chr6 10948352 10948376 -171466866 + (CA)n Simple_repeat Simple_repeat 2 25 0 205 184 0 0 chr6 10948435 10948473 -171466769 - L2 LINE L2 -10 3303 3266 315 231 262 27 chr6 10948766 10948987 -171466255 + L1ME4a LINE L1 5774 6046 -75 1364 153 14 9 chr6 10949139 10949354 -171465888 + AluJb SINE Alu 5 220 -92 363 186 0 0 chr6 10949354 10949413 -171465829 + AluSg/x SINE Alu 153 211 -89 427 94 0 0 chr6 10949413 10949466 -171465776 - AluSg/x SINE Alu -171 139 87 * 601 152 0 0 chr6 10949461 10949553 -171465689 + AluSg/x SINE Alu 204 295 -15 330 26 0 0 chr6 10949554 10949593 -171465649 + (TA)n Simple_repeat Simple_repeat 1 39 0 476 213 147 37 chr6 10949608 10949744 -171465498 + MER33 DNA MER1_type 10 160 -164 802 138 0 9 chr6 10949746 10949862 -171465380 + AluJo/FLAM SINE Alu 3 117 -195 1854 147 0 27 chr6 10949865 10950165 -171465077 - AluJb SINE Alu -20 292 1 37 39 0 0 chr6 10950179 10950230 -171465012 + AT_rich Low_complexity Low_complexity 1 51 0 318 231 31 0 chr6 10950232 10950297 -171464945 - AluJ/FRAM SINE Alu -12 290 224 * 682 130 45 90 chr6 10950294 10950443 -171464799 + MER33 DNA MER1_type 193 334 -2290 2177 114 23 0 chr6 10950443 10950742 -171464500 - AluSg SINE Alu -4 306 1 682 130 45 90 chr6 10950742 10950769 -171464473 + MER33 DNA MER1_type 334 361 -2 2015 138 7 0 chr6 10950828 10951119 -171464123 - AluJb SINE Alu -19 293 1 2282 100 3 3 chr6 10951237 10951536 -171463706 + AluSq SINE Alu 1 299 -14 2425 83 0 19 chr6 10952056 10952369 -171462873 + AluSx SINE Alu 6 312 0 449 84 14 0 chr6 10952371 10952442 -171462800 + (TA)n Simple_repeat Simple_repeat 1 72 0 2073 104 0 17 chr6 10952450 10952739 -171462503 + AluSq SINE Alu 14 297 -16 1934 139 0 0 chr6 10953303 10953584 -171461658 - AluJb SINE Alu -27 285 5 2272 118 0 0 chr6 10954207 10954513 -171460729 + AluSx SINE Alu 1 306 -6 2091 114 40 3 chr6 10954867 10955166 -171460076 + AluSg SINE Alu 1 310 0 2428 100 0 0 chr6 10955378 10955688 -171459554 - AluSg SINE Alu 0 310 1 801 180 174 6 chr6 10955964 10956142 -171459100 + AluJb SINE Alu 86 293 -19 285 274 67 44 chr6 10956152 10956287 -171458955 + MIR SINE MIR 88 225 -37 210 71 0 0 chr6 10956886 10956914 -171458328 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 492 208 74 40 chr6 10956914 10957063 -171458179 - L2 LINE L2 -13 3300 3147 1395 236 116 48 chr6 10957064 10957424 -171457818 + L1ME3A LINE L1 5646 6049 -121 2270 87 0 13 chr6 10957424 10957724 -171457518 - AluSx SINE Alu -16 296 1 1395 236 116 48 chr6 10957724 10957847 -171457395 + L1ME3A LINE L1 6049 6162 -8 2259 99 10 0 chr6 10957866 10958169 -171457073 + AluSx SINE Alu 1 306 -6 252 231 218 55 chr6 10958172 10958499 -171456743 - L2 LINE L2 -157 3156 2541 1127 176 80 99 chr6 10958536 10958714 -171456528 - MSTB2 LTR MaLR 0 457 288 2196 81 34 14 chr6 10958714 10958849 -171456393 + AluSq SINE Alu 1 132 -181 2116 75 6 90 chr6 10958849 10959171 -171456071 + AluY SINE Alu 1 295 -16 2196 81 34 14 chr6 10959171 10959331 -171455911 + AluSq SINE Alu 132 302 -11 1127 176 80 99 chr6 10959331 10959504 -171455738 - MSTB2 LTR MaLR -169 288 113 653 204 55 11 chr6 10959508 10959685 -171455557 + MLT1C LTR MaLR 58 231 -159 376 127 0 0 chr6 10959690 10959753 -171455489 + L1MB8 LINE L1 6115 6177 -1 2788 174 37 57 chr6 10959768 10959913 -171455329 - MER6A DNA MER2_type -261 604 458 2069 102 53 3 chr6 10959913 10960198 -171455044 - AluSg SINE Alu -11 299 1 2788 174 37 57 chr6 10960198 10960645 -171454597 - MER6A DNA MER2_type -407 458 24 672 247 26 53 chr6 10960683 10960861 -171454381 - MER114 LTR ERV -427 221 49 2199 97 3 0 chr6 10960861 10961149 -171454093 + AluSq SINE Alu 1 289 -24 672 247 26 53 chr6 10961149 10961197 -171454045 - MER114 LTR ERV -599 49 1 2115 118 0 26 chr6 10961943 10962249 -171452993 - AluSx SINE Alu -14 298 1 2191 118 16 0 chr6 10962906 10963210 -171452032 + AluJb SINE Alu 4 312 0 626 201 158 18 chr6 10963696 10963860 -171451382 + MER105 DNA DNA 7 193 -11 2282 90 3 3 chr6 10964647 10964946 -171450296 - AluSp SINE Alu -14 299 1 21 36 0 0 chr6 10965156 10965184 -171450058 + AT_rich Low_complexity Low_complexity 1 28 0 1967 94 16 84 chr6 10965227 10965429 -171449813 - AluSq SINE Alu -15 298 124 2183 129 0 0 chr6 10965429 10965738 -171449504 - AluSx SINE Alu -3 309 1 1967 94 16 84 chr6 10965738 10965855 -171449387 - AluSq SINE Alu -189 124 1 788 191 0 15 chr6 10965901 10966032 -171449210 - FLAM_C SINE Alu -4 129 1 1983 114 22 4 chr6 10966387 10966704 -171448538 + AluSx SINE Alu 9 330 0 24 0 0 0 chr6 10966771 10966795 -171448447 + AT_rich Low_complexity Low_complexity 1 24 0 2436 84 10 0 chr6 10967091 10967389 -171447853 + AluSg SINE Alu 1 301 -9 991 265 0 5 chr6 10967957 10968172 -171447070 - MER20 DNA MER1_type -5 214 1 2115 137 0 0 chr6 10968680 10968980 -171446262 - AluSx SINE Alu -12 300 1 2209 116 0 3 chr6 10969739 10970041 -171445201 - AluSq SINE Alu -10 303 3 2208 100 34 0 chr6 10970043 10970334 -171444908 - AluSq SINE Alu -12 301 1 2219 103 3 0 chr6 10970479 10970793 -171444449 - AluSp SINE Alu 0 313 1 691 222 26 37 chr6 10971031 10971220 -171444022 + L2 LINE L2 3126 3312 -1 517 281 167 72 chr6 10971268 10971712 -171443530 - L3 LINE CR1 -157 1420 935 185 204 20 41 chr6 10971732 10971781 -171443461 - L2 LINE L2 -16 3297 3250 281 280 130 10 chr6 10972017 10972217 -171443025 - L3 LINE CR1 -820 757 534 197 361 50 20 chr6 10972284 10972486 -171442756 - L3 LINE CR1 -1222 355 148 324 292 100 38 chr6 10972998 10973238 -171442004 - MLT1J LTR MaLR 0 511 257 237 214 71 0 chr6 10973297 10973353 -171441889 - MIR SINE MIR -114 148 89 2269 134 0 0 chr6 10973937 10974243 -171440999 + AluSx SINE Alu 1 306 -6 183 42 0 0 chr6 10974350 10974374 -171440868 + (TG)n Simple_repeat Simple_repeat 2 25 0 2100 170 115 3 chr6 10974380 10974763 -171440479 - MSTB LTR MaLR 0 426 1 339 225 295 25 chr6 10975248 10975448 -171439794 + Charlie2 DNA MER1_type 72 325 -2537 1609 122 106 47 chr6 10975472 10975547 -171439695 + MER44D DNA MER2_type 1 70 -2421 2189 99 14 3 chr6 10975547 10975839 -171439403 + AluSx SINE Alu 1 295 -17 1609 122 106 47 chr6 10975839 10976083 -171439159 + MER44D DNA MER2_type 70 609 0 192 77 0 0 chr6 10976322 10976348 -171438894 + (T)n Simple_repeat Simple_repeat 1 26 0 278 220 0 0 chr6 10976352 10976411 -171438831 + Charlie2a DNA MER1_type 72 130 -2652 729 183 89 0 chr6 10976437 10976606 -171438636 + Charlie2a DNA MER1_type 828 1011 -1851 429 194 37 19 chr6 10976611 10976719 -171438523 + Charlie2a DNA MER1_type 2753 2862 0 2241 114 0 13 chr6 10976745 10977053 -171438189 - AluSx SINE Alu -7 305 2 32 57 0 0 chr6 10977097 10977150 -171438092 + AT_rich Low_complexity Low_complexity 1 53 0 1585 169 83 4 chr6 10977222 10977488 -171437754 + AluJb SINE Alu 11 297 -15 2520 53 7 10 chr6 10977628 10977927 -171437315 - AluY SINE Alu -13 298 1 201 167 0 0 chr6 10977985 10978021 -171437221 + (TTA)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr6 10979233 10979255 -171435987 + AT_rich Low_complexity Low_complexity 1 22 0 2260 99 3 0 chr6 10979257 10979541 -171435701 - AluSq SINE Alu -28 285 1 2236 82 4 0 chr6 10981453 10981765 -171433477 - AluY SINE Alu 0 313 1 634 316 118 24 chr6 10981766 10982232 -171433010 - L2 LINE L2 -597 2717 2208 2383 83 10 0 chr6 10982626 10982926 -171432316 + AluSx SINE Alu 1 303 -9 480 18 0 0 chr6 10983244 10983301 -171431941 + (TG)n Simple_repeat Simple_repeat 1 57 0 2143 90 14 4 chr6 10983301 10983578 -171431664 - AluSq SINE Alu -33 280 1 2366 106 0 0 chr6 10983780 10984082 -171431160 + AluSx SINE Alu 1 302 -10 2314 92 20 0 chr6 10984758 10985050 -171430192 + AluSc SINE Alu 2 299 -10 197 273 0 18 chr6 10985428 10985483 -171429759 - L2 LINE L2 -1 3271 3218 2323 83 6 19 chr6 10985516 10985828 -171429414 + AluSq SINE Alu 1 308 -5 2456 103 0 0 chr6 10986346 10986658 -171428584 - AluSx SINE Alu 0 312 1 581 317 104 38 chr6 10986818 10986965 -171428277 + L2 LINE L2 2816 2952 -320 961 32 113 0 chr6 10986965 10987089 -171428153 - MER85 DNA T2_type -1 138 1 581 317 104 38 chr6 10987089 10987364 -171427878 + L2 LINE L2 2952 3266 -6 2261 92 4 0 chr6 10987566 10987871 -171427371 + AluSp SINE Alu 1 306 0 2047 117 10 17 chr6 10988080 10988379 -171426863 - AluSx SINE Alu -15 297 1 1819 88 146 8 chr6 10988439 10988699 -171426543 - AluSg1 SINE Alu -13 296 1 2049 132 4 0 chr6 10989416 10989726 -171425516 + AluSx SINE Alu 1 311 0 258 106 136 30 chr6 10990308 10990374 -171424868 + MER66A LTR ERV1 302 374 -104 765 173 0 23 chr6 10990390 10990523 -171424719 + AluJb SINE Alu 5 134 -178 258 267 151 0 chr6 10990528 10990614 -171424628 + Charlie2 DNA MER1_type 44 142 -2640 2475 219 106 33 chr6 10990743 10991505 -171423737 + Charlie2 DNA MER1_type 1856 2700 -162 2192 107 0 29 chr6 10991505 10991813 -171423429 + AluSg SINE Alu 1 299 -11 2475 219 106 33 chr6 10991813 10991987 -171423255 + Charlie2 DNA MER1_type 2700 2860 -2 2360 93 0 10 chr6 10992861 10993173 -171422069 + AluSc SINE Alu 1 309 0 187 280 160 13 chr6 10993398 10993473 -171421769 + MIR SINE MIR 58 143 -119 186 103 0 0 chr6 10994729 10994758 -171420484 + (ATG)n Simple_repeat Simple_repeat 1 29 0 235 167 103 26 chr6 10994817 10994895 -171420347 - MIR SINE MIR -70 192 109 394 280 127 11 chr6 10994999 10995188 -171420054 + MIR SINE MIR 47 257 -5 565 265 116 5 chr6 10995583 10995798 -171419444 - MIR SINE MIR -1 261 23 1760 160 13 32 chr6 10996264 10996576 -171418666 - AluJo SINE Alu -6 306 1 2212 114 0 13 chr6 10996910 10997209 -171418033 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 10997211 10997232 -171418010 + AT_rich Low_complexity Low_complexity 1 21 0 2233 82 51 10 chr6 10997686 10997980 -171417262 - AluSc SINE Alu -3 306 1 293 253 32 21 chr6 10998134 10998229 -171417013 - MIR SINE MIR -33 229 134 2290 82 0 82 chr6 10999718 11000059 -171415183 + AluSq SINE Alu 1 313 0 2336 99 0 10 chr6 11000389 11000693 -171414549 - AluSq SINE Alu -12 301 1 2179 102 3 20 chr6 11001638 11001941 -171413301 - AluSq SINE Alu -15 298 1 23 33 0 0 chr6 11001941 11001971 -171413271 + AT_rich Low_complexity Low_complexity 1 30 0 2151 126 0 7 chr6 11002875 11003177 -171412065 + AluSx SINE Alu 1 300 -12 2036 150 35 5 chr6 11003177 11003544 -171411698 - L1MC2 LINE L1 -30 6314 5934 1393 98 60 102 chr6 11003544 11003810 -171411432 + AluSx SINE Alu 58 312 0 1639 126 51 63 chr6 11003898 11004181 -171411061 + L1MC3 LINE L1 6686 6966 -819 2451 73 0 3 chr6 11004181 11004481 -171410761 + AluY SINE Alu 2 300 -11 1639 126 51 63 chr6 11004481 11004530 -171410712 + L1MC3 LINE L1 6966 7014 -771 186 71 0 0 chr6 11004531 11004559 -171410683 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 1886 118 4 0 chr6 11004568 11004822 -171410420 + AluSx SINE Alu 9 263 -49 1855 91 8 0 chr6 11004831 11005074 -171410168 + AluSp SINE Alu 63 307 -6 2256 138 11 17 chr6 11005104 11005466 -171409776 - LTR8 LTR ERV1 0 691 332 713 151 32 8 chr6 11005456 11005582 -171409660 + LTR19A LTR ERV1 358 486 0 * 1504 195 61 3 chr6 11005582 11005895 -171409347 + MER58B DNA MER1_type 9 339 -2 302 238 119 23 chr6 11005941 11006114 -171409128 + L1MC/D LINE L1 5530 5724 -545 478 139 0 0 chr6 11006114 11006186 -171409056 - AluS SINE Alu -241 72 1 2283 104 13 3 chr6 11006288 11006597 -171408645 + AluSq SINE Alu 1 312 -1 208 335 75 71 chr6 11006762 11007001 -171408241 + L2 LINE L2 3009 3248 -24 2400 91 0 0 chr6 11007498 11007795 -171407447 - AluSx SINE Alu -15 297 1 1439 175 35 14 chr6 11008053 11008338 -171406904 + AluJo SINE Alu 10 300 -12 2026 131 3 7 chr6 11009534 11009831 -171405411 - AluSx SINE Alu -16 296 1 460 311 84 41 chr6 11010744 11011255 -171403987 - L2 LINE L2 -27 3245 2717 633 165 0 0 chr6 11011278 11011375 -171403867 - AluSx SINE Alu -24 288 192 828 137 8 0 chr6 11011381 11011512 -171403730 - AluSx SINE Alu -181 132 1 419 314 268 18 chr6 11011514 11012185 -171403057 - L2 LINE L2 -601 2713 1875 2196 92 3 3 chr6 11012257 11012550 -171402692 - AluSp SINE Alu -20 293 1 642 109 7 130 chr6 11012577 11012715 -171402527 + 5S rRNA rRNA 1 121 0 1870 167 0 3 chr6 11012746 11013051 -171402191 + AluSx SINE Alu 1 304 -8 4790 34 0 5 chr6 11014660 11015221 -171400021 + LTR6B LTR ERV1 1 558 0 292 293 9 19 chr6 11016012 11016118 -171399124 - MIR SINE MIR -80 128 24 410 267 118 12 chr6 11016365 11016526 -171398716 + MIR SINE MIR 82 259 -3 1567 183 0 42 chr6 11016951 11017262 -171397980 + AluSx SINE Alu 1 298 -14 199 273 26 13 chr6 11018419 11018496 -171396746 + L2 LINE L2 2416 2493 -821 220 329 111 28 chr6 11018828 11018971 -171396271 - MIR SINE MIR -44 164 8 540 208 145 13 chr6 11019774 11019933 -171395309 - MIR SINE MIR -21 241 62 486 301 155 30 chr6 11019984 11020496 -171394746 + L2 LINE L2 2665 3313 0 2156 127 0 22 chr6 11020721 11021037 -171394205 + AluSx SINE Alu 1 309 -3 184 330 91 23 chr6 11021166 11021254 -171393988 + L2 LINE L2 3174 3267 -5 1604 170 43 7 chr6 11022326 11022602 -171392640 + AluJo SINE Alu 1 286 -26 1900 133 3 7 chr6 11022654 11022939 -171392303 - AluSg SINE Alu -26 284 1 1481 115 13 21 chr6 11022970 11023205 -171392037 - LTR12 LTR ERV1 0 714 482 3573 152 162 29 chr6 11023205 11023934 -171391308 - LTR12 LTR ERV1 0 826 1 2191 110 10 0 chr6 11024024 11024323 -171390919 - AluSq SINE Alu -11 302 1 1025 175 80 0 chr6 11024430 11024630 -171390612 + L1MDa LINE L1 16 231 -6309 1218 129 0 0 chr6 11024630 11024808 -171390434 + AluSg/x SINE Alu 123 300 -12 2263 93 40 0 chr6 11024831 11025131 -171390111 + AluSq SINE Alu 1 312 -1 617 242 89 111 chr6 11025168 11025582 -171389660 + L1MDa LINE L1 275 697 -5843 1797 130 26 0 chr6 11025582 11025851 -171389391 + AluSx SINE Alu 1 276 -36 2612 64 0 0 chr6 11025851 11026162 -171389080 - AluY SINE Alu 0 311 1 617 242 89 111 chr6 11026162 11026250 -171388992 + L1MDa LINE L1 695 1081 -5459 626 216 0 14 chr6 11026251 11026390 -171388852 + MER7A DNA MER2_type 2 136 -210 2236 106 0 0 chr6 11026390 11026700 -171388542 + AluSx SINE Alu 1 310 0 253 282 155 29 chr6 11026720 11026894 -171388348 - L2 LINE L2 -4 3309 3114 226 297 84 24 chr6 11027123 11027372 -171387870 - L1 LINE L1 -1797 4349 4086 2078 124 21 0 chr6 11027696 11027987 -171387255 + AluSx SINE Alu 2 298 -14 2206 107 0 0 chr6 11027989 11028293 -171386949 + AluSx SINE Alu 3 306 0 304 286 77 86 chr6 11028295 11028816 -171386426 + L1 LINE L1 4493 5006 -1140 * 472 176 123 65 chr6 11028792 11028962 -171386280 + L1MA7 LINE L1 6117 6287 -4 2062 131 3 3 chr6 11029025 11029315 -171385927 + AluSx SINE Alu 1 290 -22 956 112 15 0 chr6 11029323 11029457 -171385785 - LTR8 LTR ERV1 -544 147 12 2324 88 0 0 chr6 11029461 11029757 -171385485 + AluY SINE Alu 1 296 -15 275 234 66 66 chr6 11029826 11030053 -171385189 + L1 LINE L1 5164 5390 -756 1652 194 36 3 chr6 11030109 11030438 -171384804 + MER58B DNA MER1_type 1 340 -1 2284 84 10 7 chr6 11030645 11030941 -171384301 - AluSc SINE Alu -12 297 1 2450 85 0 0 chr6 11030943 11031249 -171383993 - AluSc SINE Alu -3 306 1 207 322 50 94 chr6 11031513 11031715 -171383527 + L2 LINE L2 3009 3201 -71 3146 128 50 116 chr6 11031717 11032453 -171382789 + LTR12 LTR ERV1 1 688 0 602 179 0 0 chr6 11032459 11032554 -171382688 + LTR12 LTR ERV1 620 714 0 2153 105 20 0 chr6 11033277 11033573 -171381669 - AluSg SINE Alu -8 302 1 339 55 7 11 chr6 11033591 11033605 -171381637 + AluSp/q SINE Alu 256 269 -34 1750 82 9 0 chr6 11033605 11033825 -171381417 + AluSp SINE Alu 2 223 -90 339 55 7 11 chr6 11033825 11033872 -171381370 + AluSp/q SINE Alu 269 302 -1 1515 184 20 30 chr6 11033884 11034183 -171381059 + AluJo SINE Alu 1 296 -16 2090 130 0 37 chr6 11035363 11035687 -171379555 - AluSx SINE Alu 0 312 1 2012 136 0 3 chr6 11035699 11036008 -171379234 - AluSx SINE Alu 0 308 1 2067 120 3 13 chr6 11036070 11036378 -171378864 + AluSg SINE Alu 1 305 -5 259 326 44 30 chr6 11037222 11037357 -171377885 - L2 LINE L2 -18 3295 3159 336 311 101 8 chr6 11037357 11037653 -171377589 - L2 LINE L2 -225 3047 2717 1682 130 11 15 chr6 11037664 11037926 -171377316 - AluSx SINE Alu -14 298 38 1473 146 13 4 chr6 11037926 11038151 -171377091 + AluSq SINE Alu 63 290 -23 2211 101 0 3 chr6 11038799 11039085 -171376157 - AluSg SINE Alu -17 293 9 300 248 24 48 chr6 11040648 11040773 -171374469 - MIR SINE MIR -135 127 6 428 245 123 18 chr6 11040996 11041159 -171374083 + MIR SINE MIR 82 261 -1 1740 176 0 13 chr6 11041599 11041911 -171373331 + AluSx SINE Alu 1 308 -4 955 168 5 47 chr6 11043187 11043378 -171371864 - AluSg SINE Alu -17 293 111 6935 170 121 38 chr6 11043396 11045040 -171370202 - pTR5 LTR ERV1 -9 2429 108 2907 214 74 61 chr6 11045040 11046348 -171368894 + LTR12 LTR ERV1 2 714 0 634 138 32 0 chr6 11046348 11046442 -171368800 - AluSg SINE Alu -199 111 15 1711 190 66 29 chr6 11046604 11047035 -171368207 + LTR10E LTR ERV1 161 602 0 1679 167 4 4 chr6 11047035 11047299 -171367943 - AluSx SINE Alu -48 264 1 203 330 117 0 chr6 11047593 11047687 -171367555 - MIR SINE MIR -59 149 45 1239 111 12 0 chr6 11047688 11047859 -171367383 + AluSg/x SINE Alu 121 293 -17 2643 210 89 4 chr6 11047864 11048727 -171366515 + L1MD1 LINE L1 2386 3316 -3224 1468 192 16 0 chr6 11048788 11049043 -171366199 + AluJb SINE Alu 6 264 -48 1992 210 29 4 chr6 11049122 11049598 -171365644 + L1MB8 LINE L1 4338 4825 -1321 629 39 0 0 chr6 11049599 11049676 -171365566 + AluS SINE Alu 2 78 -234 3471 180 46 42 chr6 11049700 11050159 -171365083 + L1MB8 LINE L1 5386 5851 -327 2412 89 0 0 chr6 11050159 11050463 -171364779 + AluSq SINE Alu 2 305 -8 3471 180 46 42 chr6 11050463 11050793 -171364449 + L1MB8 LINE L1 5851 6178 0 468 200 0 12 chr6 11050808 11050893 -171364349 + FLAM_A SINE Alu 33 116 -26 760 164 0 0 chr6 11051033 11051155 -171364087 + FLAM_C SINE Alu 2 123 -10 676 173 56 26 chr6 11051172 11051292 -171363950 + L1MD1 LINE L1 3467 3582 -2958 2167 119 3 0 chr6 11051292 11051595 -171363647 - AluSq SINE Alu -8 305 2 676 173 56 26 chr6 11051595 11051705 -171363537 + L1MD1 LINE L1 3582 3704 -2836 1600 230 92 13 chr6 11051714 11052082 -171363160 + L1MD1 LINE L1 4379 4793 -1747 2255 110 0 10 chr6 11052082 11052391 -171362851 + AluSg SINE Alu 1 306 -4 1600 230 92 13 chr6 11052391 11052491 -171362751 + L1MD1 LINE L1 4793 4884 -1656 2194 117 7 0 chr6 11052494 11052803 -171362439 + AluSq SINE Alu 1 311 -2 393 159 0 155 chr6 11052816 11052916 -171362326 + MER7A DNA MER2_type 1 80 -266 * 807 173 29 0 chr6 11052903 11053042 -171362200 + MER7A DNA MER2_type 204 346 0 2018 187 85 25 chr6 11053048 11053694 -171361548 + L1MD1 LINE L1 5007 5613 -1023 2332 104 0 13 chr6 11053694 11054002 -171361240 + AluSx SINE Alu 1 304 -8 2018 187 85 25 chr6 11054002 11054822 -171360420 + L1MD1 LINE L1 5613 6617 -19 1139 181 75 4 chr6 11055072 11055298 -171359944 - AluJo SINE Alu -8 304 63 1122 71 0 0 chr6 11055300 11055440 -171359802 + AluSg/x SINE Alu 166 305 -7 24 0 0 0 chr6 11055883 11055907 -171359335 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 11055921 11055943 -171359299 + AT_rich Low_complexity Low_complexity 1 22 0 1933 65 0 4 chr6 11056725 11056973 -171358269 + L1PA4 LINE L1 5909 6155 0 2586 167 11 23 chr6 11056973 11057447 -171357795 + L1MB7 LINE L1 5663 6130 -54 389 297 131 6 chr6 11058464 11058582 -171356660 + L2 LINE L2 2550 2698 -616 2348 101 0 28 chr6 11058582 11058900 -171356342 - AluSg SINE Alu -1 309 1 389 297 131 6 chr6 11058900 11058956 -171356286 + L2 LINE L2 2698 2746 -568 401 243 10 10 chr6 11058959 11059062 -171356180 + L1MC5 LINE L1 7758 7860 -101 478 303 251 5 chr6 11059150 11059529 -171355713 + L2 LINE L2 2842 3313 0 2246 85 18 0 chr6 11060178 11060460 -171354782 - AluSc SINE Alu -22 287 1 1955 122 7 14 chr6 11061178 11061517 -171353725 + AluSx SINE Alu 1 337 0 1863 103 139 48 chr6 11061692 11062023 -171353219 - MER46B DNA MER2_type 0 236 1 2431 58 3 42 chr6 11062398 11062710 -171352532 + AluY SINE Alu 1 300 -11 1964 161 0 19 chr6 11063234 11063550 -171351692 - AluJb SINE Alu -2 310 1 1928 131 68 14 chr6 11064020 11064126 -171351116 + L1PA11 LINE L1 5803 5902 -272 2229 126 3 0 chr6 11064126 11064436 -171350806 + AluSx SINE Alu 1 311 -1 1928 131 68 14 chr6 11064436 11064681 -171350561 + L1PA11 LINE L1 5902 6173 -1 914 148 75 223 chr6 11064994 11065145 -171350097 + MLT1A2 LTR MaLR 20 192 -182 2188 84 3 30 chr6 11065145 11065444 -171349798 + AluSx SINE Alu 1 291 -21 914 148 75 223 chr6 11065444 11065705 -171349537 + MLT1A2 LTR MaLR 192 371 -3 2187 122 0 3 chr6 11066272 11066584 -171348658 - AluY SINE Alu 0 311 1 236 289 173 0 chr6 11067030 11067134 -171348108 + MIR SINE MIR 13 134 -128 227 273 40 100 chr6 11067411 11067561 -171347681 + L2 LINE L2 2952 3092 -180 1852 121 71 11 chr6 11067596 11067877 -171347365 - AluSx SINE Alu -14 298 1 282 243 95 0 chr6 11068577 11068651 -171346591 - L2 LINE L2 0 3313 3233 1341 122 48 0 chr6 11068652 11068840 -171346402 - AluSq SINE Alu -114 199 3 417 218 57 104 chr6 11069298 11069491 -171345751 + MIR SINE MIR 3 186 -76 2391 73 3 7 chr6 11071223 11071526 -171343716 - AluSp SINE Alu -11 302 1 1133 188 5 0 chr6 11071560 11071768 -171343474 + AluJb SINE Alu 87 295 -17 1381 125 44 36 chr6 11072109 11072357 -171342885 - LTR10E LTR ERV1 -21 612 363 1220 46 10 34 chr6 11072357 11072555 -171342687 - LTR10E LTR ERV1 -381 252 2 513 120 0 0 chr6 11072680 11072755 -171342487 + AluS SINE Alu 2 76 -236 1893 78 90 15 chr6 11072781 11073049 -171342193 + AluSc SINE Alu 1 288 -21 1838 200 95 27 chr6 11073846 11074297 -171340945 + LTR2B LTR ERV1 9 490 0 235 86 0 0 chr6 11074828 11074863 -171340379 - L2 LINE L2 0 3313 3279 731 218 147 107 chr6 11075614 11076064 -171339178 - MLT1J LTR MaLR -43 468 1 357 224 0 0 chr6 11076164 11076231 -171339011 - MER2 DNA MER2_type -3 342 276 1919 109 33 4 chr6 11076232 11076507 -171338735 + AluSq SINE Alu 1 283 -30 1338 122 0 0 chr6 11076507 11076695 -171338547 + AluSg/x SINE Alu 115 302 -8 1012 146 70 0 chr6 11076777 11076948 -171338294 - MER2 DNA MER2_type -159 186 4 260 286 214 18 chr6 11077164 11077276 -171337966 + MER5A DNA MER1_type 50 183 -6 922 26 78 0 chr6 11078107 11078222 -171337020 - L1PA7 LINE L1 -1 6153 6030 379 146 49 37 chr6 11078702 11078784 -171336458 - L1MA10 LINE L1 -4 6330 6248 899 170 0 0 chr6 11079309 11079444 -171335798 + FRAM SINE Alu 2 136 -40 222 250 0 0 chr6 11080237 11080285 -171334957 + T-rich Low_complexity Low_complexity 1 48 0 881 168 0 56 chr6 11081161 11081340 -171333902 - FRAM SINE Alu -5 171 3 2698 148 102 5 chr6 11083257 11083716 -171331526 - MER61D LTR ERV1 0 501 1 291 302 116 28 chr6 11083721 11083936 -171331306 + MIR SINE MIR 11 244 -18 2128 127 102 40 chr6 11083989 11084400 -171330842 + L1MA8 LINE L1 3063 3508 -2638 1562 212 0 7 chr6 11084400 11084692 -171330550 + AluJo SINE Alu 1 290 -22 2128 127 102 40 chr6 11084692 11084751 -171330491 + L1MA8 LINE L1 3508 3562 -2584 828 165 0 0 chr6 11084766 11084893 -171330349 - FLAM_C SINE Alu -16 127 1 3551 161 41 17 chr6 11084894 11085233 -171330009 + L1MA8 LINE L1 3552 3881 -2265 1868 162 14 3 chr6 11085233 11085530 -171329712 - AluJb SINE Alu -10 302 3 3551 161 41 17 chr6 11085530 11085854 -171329388 + L1MA8 LINE L1 3881 4231 -1915 626 177 0 139 chr6 11085854 11086012 -171329230 + Tigger1 DNA MER2_type 1 136 -2282 2244 114 10 0 chr6 11086037 11086345 -171328897 - AluSx SINE Alu -1 311 1 830 148 126 16 chr6 11086345 11086385 -171328857 + Tigger1 DNA MER2_type 2216 2250 -168 2222 112 3 3 chr6 11086385 11086690 -171328552 - AluSc SINE Alu -4 305 1 830 148 126 16 chr6 11086690 11086711 -171328531 + Tigger1 DNA MER2_type 2250 2267 -151 841 123 0 46 chr6 11086711 11086841 -171328401 - FLAM_C SINE Alu -9 124 1 830 148 126 16 chr6 11086841 11086961 -171328281 + Tigger1 DNA MER2_type 2267 2418 0 5372 155 41 55 chr6 11086961 11087295 -171327947 + L1MA8 LINE L1 4230 4567 -1724 2069 119 6 26 chr6 11087295 11087607 -171327635 - AluSx SINE Alu -6 306 1 5372 155 41 55 chr6 11087607 11087675 -171327567 + L1MA8 LINE L1 4567 4634 -1657 2077 130 0 7 chr6 11087675 11087975 -171327267 + AluSx SINE Alu 7 304 -8 5372 155 41 55 chr6 11087975 11088580 -171326662 + L1MA8 LINE L1 4634 5246 -1045 2740 176 45 50 chr6 11088580 11089195 -171326047 - LTR9 LTR ERV1 0 612 1 5372 155 41 55 chr6 11089195 11089290 -171325952 + L1MA8 LINE L1 5246 5341 -950 416 36 0 0 chr6 11089290 11089346 -171325896 - L1PB2 LINE L1 -2 6149 6094 216 0 0 0 chr6 11089346 11089370 -171325872 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2141 106 7 0 chr6 11089370 11089653 -171325589 - AluSx SINE Alu -27 285 1 5372 155 41 55 chr6 11089653 11090394 -171324848 + L1MA8 LINE L1 5339 6089 -202 2319 97 7 3 chr6 11090394 11090692 -171324550 + AluSq SINE Alu 1 299 -14 5372 155 41 55 chr6 11090692 11090734 -171324508 + L1MA8 LINE L1 6089 6130 -161 725 127 18 0 chr6 11090734 11090844 -171324398 + HY1 scRNA scRNA 1 112 0 5372 155 41 55 chr6 11090844 11091032 -171324210 + L1MA8 LINE L1 6130 6286 -5 648 169 159 36 chr6 11091060 11091167 -171324075 - Charlie5 DNA MER1_type -15 2570 2478 1446 162 64 72 chr6 11091167 11091544 -171323698 + MLT1A2 LTR MaLR 1 374 0 648 169 159 36 chr6 11091544 11091631 -171323611 - Charlie5 DNA MER1_type -107 2478 2352 332 125 54 0 chr6 11091734 11091790 -171323452 - L1MB4 LINE L1 -1 6179 6121 292 105 0 0 chr6 11091790 11091828 -171323414 - U2 snRNA snRNA -150 38 1 844 159 61 0 chr6 11091830 11091993 -171323249 - L1MB3 LINE L1 -51 6132 5960 510 183 82 0 chr6 11091993 11092103 -171323139 - MER33 DNA MER1_type -274 50 1 888 218 35 5 chr6 11092600 11092797 -171322445 - MLT1B LTR MaLR 0 390 188 622 234 39 0 chr6 11092849 11092977 -171322265 - AluJo SINE Alu -178 134 2 630 200 80 27 chr6 11092988 11093138 -171322104 - MLT1B LTR MaLR -216 158 1 227 290 0 0 chr6 11093568 11093637 -171321605 + L2 LINE L2 2436 2504 -810 954 155 106 48 chr6 11094949 11095156 -171320086 - MER20 DNA MER1_type 0 219 1 601 200 31 15 chr6 11095168 11095298 -171319944 - MER5A DNA MER1_type -5 184 53 961 276 130 30 chr6 11095424 11095862 -171319380 + MLT1L LTR MaLR 40 521 -94 622 227 67 0 chr6 11095994 11096144 -171319098 - MER3 DNA MER1_type 0 209 50 316 234 112 90 chr6 11096204 11096392 -171318850 - MER106A DNA MER1_type -44 192 1 3877 228 49 42 chr6 11096547 11097930 -171317312 + L1PA11 LINE L1 2 2756 -4828 * 17210 133 30 12 chr6 11097929 11099986 -171315256 + L1PA11 LINE L1 3849 5867 -1745 2318 103 3 3 chr6 11099986 11100288 -171314954 + AluSq SINE Alu 1 302 -11 17210 133 30 12 chr6 11100288 11101084 -171314158 + L1PA11 LINE L1 5867 6750 -862 189 0 0 0 chr6 11101084 11101105 -171314137 + (CA)n Simple_repeat Simple_repeat 2 22 0 17210 133 30 12 chr6 11101105 11101400 -171313842 + L1PA11 LINE L1 6750 7038 -574 1360 59 6 6 chr6 11101400 11101569 -171313673 + AluY SINE Alu 130 298 -13 3658 82 80 4 chr6 11101569 11102095 -171313147 + L1PA11 LINE L1 7031 7596 -16 393 311 68 34 chr6 11102096 11102269 -171312973 - L2 LINE L2 -620 2694 2505 3316 144 40 36 chr6 11102269 11102718 -171312524 - MER41B LTR ERV1 0 635 182 1906 143 7 13 chr6 11102718 11103018 -171312224 - AluSx SINE Alu -14 298 1 3316 144 40 36 chr6 11103018 11103201 -171312041 - MER41B LTR ERV1 -453 182 1 393 311 68 34 chr6 11103201 11103320 -171311922 - L2 LINE L2 -809 2505 2392 1653 163 15 7 chr6 11103843 11104113 -171311129 - AluSx SINE Alu -10 302 31 8647 159 44 30 chr6 11104118 11105787 -171309455 - pTR5 LTR ERV1 -2 2436 744 372 160 43 0 chr6 11105810 11105904 -171309338 + CT-rich Low_complexity Low_complexity 1 98 0 2010 113 17 3 chr6 11105909 11106202 -171309040 - AluY SINE Alu -14 297 1 252 236 144 69 chr6 11106307 11106481 -171308761 + MLT1H LTR MaLR 114 300 -249 2314 162 86 54 chr6 11106539 11106660 -171308582 + MER34C LTR ERV1 31 147 -438 2461 75 0 0 chr6 11106660 11106955 -171308287 - AluSg SINE Alu -15 295 1 2314 162 86 54 chr6 11106955 11107371 -171307871 + MER34C LTR ERV1 147 585 0 752 161 121 7 chr6 11107436 11107585 -171307657 + HsTC2 DNA Tc2 228 393 -1505 535 234 54 0 chr6 11107738 11107849 -171307393 - MER58A DNA MER1_type 0 117 1 2174 98 4 0 chr6 11107868 11108186 -171307056 - AluSc SINE Alu 0 322 4 233 264 109 39 chr6 11108617 11108860 -171306382 + MER5C DNA MER1_type 7 323 -1 2239 125 0 0 chr6 11108899 11109195 -171306047 - AluSx SINE Alu -16 296 1 337 281 52 22 chr6 11109882 11110017 -171305225 + MIR3 SINE MIR 11 149 -59 635 178 123 6 chr6 11110718 11110881 -171304361 - MER5A DNA MER1_type -5 184 3 773 169 0 0 chr6 11110933 11111051 -171304191 + AluJo/FLAM SINE Alu 1 118 -184 917 125 31 0 chr6 11111052 11111204 -171304038 - AluSg/x SINE Alu 0 306 151 1573 114 9 5 chr6 11111441 11111661 -171303581 + AluSp SINE Alu 74 294 -19 1165 210 39 0 chr6 11111777 11112006 -171303236 - MER8 DNA MER2_type -1 238 1 4081 177 63 43 chr6 11113226 11113379 -171301863 + L1MB8 LINE L1 4643 4792 -1386 1439 68 111 10 chr6 11113379 11113586 -171301656 - MER30 DNA MER1_type 0 230 3 4081 177 63 43 chr6 11113586 11113951 -171301291 + L1MB8 LINE L1 4792 5148 -1030 2218 114 0 7 chr6 11113951 11114248 -171300994 + AluSx SINE Alu 3 297 -15 2275 118 0 3 chr6 11114251 11114557 -171300685 + AluSx SINE Alu 1 305 -7 4081 177 63 43 chr6 11114557 11115169 -171300073 + L1MB8 LINE L1 5149 5808 -370 2580 47 3 0 chr6 11115169 11115465 -171299777 + AluY SINE Alu 1 297 -14 4081 177 63 43 chr6 11115465 11115792 -171299450 + L1MB8 LINE L1 5808 6127 -51 2273 102 3 3 chr6 11115864 11116168 -171299074 - AluSq SINE Alu -9 304 1 472 255 151 0 chr6 11116902 11117008 -171298234 + MER96 DNA MER1_type? 54 175 0 2149 102 6 49 chr6 11117061 11117386 -171297856 + AluSx SINE Alu 1 311 -1 1355 170 40 74 chr6 11117470 11117780 -171297462 + MLT1D LTR MaLR 148 442 -63 2180 112 0 13 chr6 11117780 11118083 -171297159 + AluSx SINE Alu 1 299 -13 1355 170 40 74 chr6 11118083 11118145 -171297097 + MLT1D LTR MaLR 442 505 0 690 183 0 32 chr6 11118565 11118691 -171296551 - FLAM_A SINE Alu -15 127 6 354 314 98 17 chr6 11118735 11118971 -171296271 + L1MDa LINE L1 1665 1919 -4621 24 0 0 0 chr6 11119043 11119067 -171296175 + AT_rich Low_complexity Low_complexity 1 24 0 277 247 97 32 chr6 11119279 11119433 -171295809 - L1M4 LINE L1 -1956 4190 4027 2197 78 0 81 chr6 11119435 11119756 -171295486 + AluY SINE Alu 1 295 -16 334 319 42 11 chr6 11120417 11120608 -171294634 + L1M4 LINE L1 4900 5096 -1050 1863 145 0 11 chr6 11120673 11120949 -171294293 + AluJo SINE Alu 1 273 -39 391 208 17 8 chr6 11120972 11121092 -171294150 + GA-rich Low_complexity Low_complexity 2 122 0 260 347 65 39 chr6 11121092 11121475 -171293767 - L2 LINE L2 -444 2870 2478 356 364 17 0 chr6 11121485 11121661 -171293581 - L2 LINE L2 -958 2356 2178 564 199 33 17 chr6 11121671 11121805 -171293437 + MER58 DNA MER1_type 12 156 -94 283 335 71 50 chr6 11121805 11122169 -171293073 - L2 LINE L2 -1973 1341 970 432 270 14 20 chr6 11122436 11122584 -171292658 + MIR SINE MIR 113 259 -3 1386 142 44 0 chr6 11122602 11122827 -171292415 - MER46A DNA MER2_type 0 236 2 803 207 0 18 chr6 11122855 11123024 -171292218 - AluSg/x SINE Alu -13 297 132 31 26 0 0 chr6 11123266 11123304 -171291938 + AT_rich Low_complexity Low_complexity 1 38 0 1119 184 19 10 chr6 11123884 11124090 -171291152 + AluJo SINE Alu 1 208 -104 2460 261 44 75 chr6 11124101 11124131 -171291111 + ERVL LTR ERVL 3766 3795 -1969 2155 139 0 0 chr6 11124131 11124441 -171290801 + AluSx SINE Alu 1 310 -2 2460 261 44 75 chr6 11124441 11125126 -171290116 + ERVL LTR ERVL 3795 4446 -1318 2289 101 0 16 chr6 11125126 11125432 -171289810 - AluSx SINE Alu -11 301 1 2460 261 44 75 chr6 11125432 11125677 -171289565 + ERVL LTR ERVL 4446 4697 -1067 356 228 63 0 chr6 11125680 11125759 -171289483 - ERVL LTR ERVL -1912 3852 3769 1975 264 61 22 chr6 11125790 11126429 -171288813 + ERVL LTR ERVL 4719 5382 -382 347 200 156 0 chr6 11126776 11126866 -171288376 + LTR41 LTR ERVL 1 104 -669 2302 80 3 7 chr6 11126951 11127238 -171288004 + AluSx SINE Alu 1 286 -26 244 310 57 64 chr6 11127268 11127586 -171287656 + L1 LINE L1 2503 2822 -3324 378 0 0 0 chr6 11127586 11127628 -171287614 + (CA)n Simple_repeat Simple_repeat 2 43 0 244 310 57 64 chr6 11127628 11127681 -171287561 + L1 LINE L1 2822 2874 -3272 2203 121 3 10 chr6 11127681 11127995 -171287247 + AluSx SINE Alu 1 312 0 244 310 57 64 chr6 11127995 11128590 -171286652 + L1 LINE L1 2874 3463 -2683 310 242 65 61 chr6 11128781 11128878 -171286364 + L1 LINE L1 4185 4280 -1866 2303 101 10 0 chr6 11128878 11129176 -171286066 + AluSx SINE Alu 4 304 -8 310 242 65 61 chr6 11129176 11129309 -171285933 + L1 LINE L1 4280 4416 -1730 361 246 143 6 chr6 11129322 11129497 -171285745 - L1MC5 LINE L1 -33 7928 7730 1750 163 48 0 chr6 11129681 11129970 -171285272 + AluSx SINE Alu 1 303 -9 319 210 210 24 chr6 11130022 11130189 -171285053 + HAL1 LINE L1 1984 2181 -326 422 280 41 46 chr6 11130267 11130485 -171284757 + HAL1 LINE L1 2291 2507 0 2011 134 3 7 chr6 11130491 11130790 -171284452 + AluSx SINE Alu 14 311 -1 222 268 14 28 chr6 11132326 11132397 -171282845 + L2 LINE L2 3203 3272 0 2279 82 3 3 chr6 11132609 11132903 -171282339 - AluSg SINE Alu -16 294 1 1841 93 0 0 chr6 11133013 11133238 -171282004 + AluSq SINE Alu 1 225 -88 198 0 0 0 chr6 11133847 11133869 -171281373 + (A)n Simple_repeat Simple_repeat 1 22 0 1586 144 60 28 chr6 11134180 11134464 -171280778 + AluJo SINE Alu 18 310 -2 25 0 0 0 chr6 11134504 11134529 -171280713 + AT_rich Low_complexity Low_complexity 1 25 0 958 149 60 40 chr6 11134629 11134682 -171280560 - MER3 DNA MER1_type -4 205 155 2177 102 34 14 chr6 11134682 11134977 -171280265 + AluSx SINE Alu 1 301 -11 958 149 60 40 chr6 11134977 11135124 -171280118 - MER3 DNA MER1_type -54 155 1 1935 172 3 0 chr6 11135158 11135461 -171279781 + AluJb SINE Alu 1 304 -8 21 36 0 0 chr6 11135579 11135607 -171279635 + AT_rich Low_complexity Low_complexity 1 28 0 2119 123 0 3 chr6 11136472 11136764 -171278478 - AluSx SINE Alu -21 291 1 831 162 71 0 chr6 11136771 11136925 -171278317 - MLT1A2 LTR MaLR -208 166 2 417 248 29 15 chr6 11137470 11137607 -171277635 + MIR SINE MIR 104 242 -20 180 111 0 0 chr6 11137877 11137904 -171277338 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1851 106 41 123 chr6 11139426 11139793 -171275449 + MER44D DNA MER2_type 1 607 -2 245 269 86 21 chr6 11139876 11139969 -171275273 + L2 LINE L2 2259 2357 -957 2152 114 32 66 chr6 11140917 11141294 -171273948 + THE1B LTR MaLR 1 364 0 232 321 12 12 chr6 11141708 11141792 -171273450 - L2 LINE L2 -55 3258 3175 2390 84 7 3 chr6 11141913 11142210 -171273032 + AluSq SINE Alu 1 298 -15 2349 100 0 10 chr6 11142450 11142760 -171272482 + AluSc SINE Alu 1 307 -2 2318 105 77 6 chr6 11142884 11143247 -171271995 + MLT1B LTR MaLR 1 389 -1 1051 188 22 0 chr6 11143610 11143791 -171271451 + AluJb SINE Alu 114 298 -14 1393 130 19 5 chr6 11144479 11144695 -171270547 - MER20 DNA MER1_type 0 219 1 1663 161 94 11 chr6 11144823 11145109 -171270133 + AluJb SINE Alu 2 311 -1 1866 206 67 28 chr6 11145358 11145820 -171269422 + MLT1D LTR MaLR 26 505 0 1732 171 0 14 chr6 11145849 11146135 -171269107 + AluJo SINE Alu 1 282 -30 845 196 24 6 chr6 11146151 11146319 -171268923 + FRAM SINE Alu 1 165 -11 22 0 0 0 chr6 11146410 11146432 -171268810 + AT_rich Low_complexity Low_complexity 1 22 0 295 191 0 16 chr6 11147385 11147448 -171267794 + MER5A DNA MER1_type 14 75 -114 2372 109 0 0 chr6 11147448 11147759 -171267483 + AluSx SINE Alu 1 311 -1 330 167 0 0 chr6 11147769 11147821 -171267421 + AluJb SINE Alu 1 52 -248 848 70 26 0 chr6 11147821 11147935 -171267307 + MER41A LTR ERV1 1 117 -437 7426 106 150 88 chr6 11147938 11149518 -171265724 + pTR5 LTR ERV1 761 2438 0 2900 91 72 2 chr6 11149522 11149938 -171265304 + MER41A LTR ERV1 109 553 -1 1347 207 4 0 chr6 11149938 11150180 -171265062 + AluJb SINE Alu 50 292 -20 2102 129 10 7 chr6 11150849 11151158 -171264084 - AluSx SINE Alu -2 310 1 308 267 17 75 chr6 11151566 11151686 -171263556 + MIR3 SINE MIR 11 123 -85 749 224 70 8 chr6 11151714 11151955 -171263287 + MER112 DNA MER1_type 1 256 0 276 285 51 29 chr6 11152473 11152610 -171262632 + L1ME LINE L1 5485 5624 -497 352 273 168 6 chr6 11152733 11152894 -171262348 + MIR SINE MIR 64 250 -12 1177 183 9 5 chr6 11152979 11153192 -171262050 - MER20 DNA MER1_type -5 214 1 2317 110 0 0 chr6 11153216 11153524 -171261718 + AluSx SINE Alu 1 308 -4 2595 65 0 0 chr6 11153874 11154180 -171261062 + AluSc SINE Alu 1 306 -3 810 124 22 58 chr6 11154263 11154400 -171260842 - FLAM_C SINE Alu -1 132 1 193 353 72 18 chr6 11155372 11155539 -171259703 + L2 LINE L2 2563 2738 -576 2184 159 12 58 chr6 11155946 11156361 -171258881 + MSTD LTR MaLR 1 396 0 265 358 112 0 chr6 11156378 11156512 -171258730 + Charlie8 DNA MER1_type 9 157 -2260 665 251 29 78 chr6 11156733 11156816 -171258426 + L1ME3A LINE L1 5359 5445 -676 573 246 0 8 chr6 11156816 11156946 -171258296 - FLAM_A SINE Alu 0 133 5 665 251 29 78 chr6 11156946 11157126 -171258116 + L1ME3A LINE L1 5445 5605 -516 2517 69 3 3 chr6 11157126 11157429 -171257813 + AluSp SINE Alu 2 304 -9 665 251 29 78 chr6 11157429 11157486 -171257756 + L1ME3A LINE L1 5605 5663 -458 533 302 45 11 chr6 11157551 11157730 -171257512 + MIR SINE MIR 50 234 -28 302 271 49 49 chr6 11157799 11157934 -171257308 + L1ME3A LINE L1 5740 5877 -244 2319 126 41 60 chr6 11157934 11158309 -171256933 + MSTA LTR MaLR 1 368 -60 1959 95 0 4 chr6 11158309 11158562 -171256680 + AluSx SINE Alu 55 306 -6 2319 126 41 60 chr6 11158562 11158622 -171256620 + MSTA LTR MaLR 368 428 0 302 271 49 49 chr6 11158622 11158689 -171256553 + L1ME3A LINE L1 5876 5942 -179 520 263 114 63 chr6 11159022 11159189 -171256053 + MLT1H LTR MaLR 15 172 -377 2284 96 0 0 chr6 11159189 11159470 -171255772 - AluSx SINE Alu -31 281 1 520 263 114 63 chr6 11159470 11159618 -171255624 + MLT1H LTR MaLR 172 346 -203 441 231 32 102 chr6 11159846 11159993 -171255249 + MER5B DNA MER1_type 1 134 -44 1957 146 23 3 chr6 11159993 11160294 -171254948 + AluJb SINE Alu 1 307 -5 441 231 32 102 chr6 11160294 11160332 -171254910 + MER5B DNA MER1_type 134 173 -5 1294 164 5 18 chr6 11160337 11160556 -171254686 - AluJo SINE Alu -12 300 85 1932 158 13 7 chr6 11160614 11160924 -171254318 - AluJb SINE Alu 0 312 1 2231 83 0 52 chr6 11161306 11161589 -171253653 + AluSc SINE Alu 1 266 -43 359 56 19 0 chr6 11161589 11161643 -171253599 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2231 83 0 52 chr6 11161643 11161685 -171253557 + AluSc SINE Alu 266 309 0 2191 119 3 0 chr6 11161689 11161984 -171253258 + AluSx SINE Alu 2 297 -15 370 230 36 50 chr6 11161984 11162123 -171253119 + MER74B LTR ERVL 420 556 -66 408 268 127 33 chr6 11163132 11163345 -171251897 + L1ME3A LINE L1 5933 6165 -5 2434 84 3 3 chr6 11163533 11163843 -171251399 - AluY SINE Alu -1 310 1 1731 140 0 79 chr6 11164411 11164749 -171250493 + AluJb SINE Alu 1 312 0 648 253 69 16 chr6 11164852 11165097 -171250145 + L1ME1 LINE L1 5892 6149 -17 662 278 57 5 chr6 11166524 11166736 -171248506 - MIR SINE MIR -9 253 31 270 284 59 10 chr6 11167196 11167298 -171247944 - MIR SINE MIR -76 186 80 539 223 0 16 chr6 11167388 11167509 -171247733 - MIR3 SINE MIR -37 171 53 937 120 0 0 chr6 11167741 11167874 -171247368 + FLAM_C SINE Alu 1 133 0 1960 153 7 3 chr6 11168048 11168349 -171246893 + AluSx SINE Alu 1 302 -10 262 283 38 38 chr6 11168419 11168525 -171246717 - MIR SINE MIR -137 125 20 2256 100 3 0 chr6 11168970 11169261 -171245981 - AluSg SINE Alu -18 292 1 284 227 11 34 chr6 11169588 11169676 -171245566 + L1MC5 LINE L1 7830 7915 -46 2435 71 10 7 chr6 11169928 11170236 -171245006 + AluY SINE Alu 1 309 -2 1328 154 5 5 chr6 11170442 11170650 -171244592 + AluJb SINE Alu 85 292 -20 202 308 158 34 chr6 11170912 11171058 -171244184 - MIR SINE MIR -73 189 26 285 167 0 0 chr6 11171081 11171129 -171244113 + MER113 DNA MER1_type? 8 55 -466 867 219 11 0 chr6 11171258 11171445 -171243797 + MER5A DNA MER1_type 1 189 0 478 237 71 30 chr6 11171448 11171617 -171243625 - MIR SINE MIR -58 204 29 1757 179 7 3 chr6 11171871 11172168 -171243074 + AluJo SINE Alu 6 303 -9 2119 112 3 7 chr6 11172462 11172784 -171242458 + AluSc SINE Alu 1 309 0 208 272 35 155 chr6 11174309 11174599 -171240643 - L2 LINE L2 -72 3200 2946 2455 72 0 0 chr6 11174651 11174943 -171240299 + AluSc SINE Alu 1 292 -17 2009 151 3 3 chr6 11175089 11175387 -171239855 - AluJo SINE Alu -14 298 1 749 83 49 27 chr6 11176061 11176757 -171238485 + (CA)n Simple_repeat Simple_repeat 1 711 0 194 266 0 75 chr6 11176997 11177091 -171238151 + MIR SINE MIR 51 137 -125 205 119 24 24 chr6 11177562 11177604 -171237638 + (TG)n Simple_repeat Simple_repeat 2 43 0 1012 118 14 0 chr6 11180159 11180303 -171234939 + FRAM SINE Alu 1 146 -30 423 0 0 0 chr6 11180423 11180470 -171234772 + (CA)n Simple_repeat Simple_repeat 1 47 0 3708 185 50 55 chr6 11180596 11181569 -171233673 + LTR5 LTR ERVK 1 969 0 324 288 42 17 chr6 11182321 11182439 -171232803 - MIR3 SINE MIR -23 185 65 368 330 84 14 chr6 11182468 11182683 -171232559 + MIR SINE MIR 33 262 0 456 63 63 40 chr6 11182879 11183053 -171232189 + (TA)n Simple_repeat Simple_repeat 2 179 0 475 149 50 37 chr6 11183053 11183214 -171232028 + (TTATA)n Simple_repeat Simple_repeat 2 164 0 373 133 55 12 chr6 11183214 11183379 -171231863 + (TA)n Simple_repeat Simple_repeat 1 172 0 399 171 18 9 chr6 11183430 11183541 -171231701 + (TA)n Simple_repeat Simple_repeat 2 113 0 2285 110 3 0 chr6 11183933 11184243 -171230999 + AluSp SINE Alu 1 311 -2 270 325 0 0 chr6 11185241 11185321 -171229921 - Charlie8 DNA MER1_type -2221 196 117 2362 109 0 0 chr6 11185657 11185969 -171229273 - AluSx SINE Alu 0 312 1 243 297 47 7 chr6 11186314 11186462 -171228780 + L1ME LINE L1 5279 5432 -730 1183 104 0 29 chr6 11186474 11186647 -171228595 - MER54A LTR ERVL 0 901 734 264 200 64 129 chr6 11186726 11186757 -171228485 + L2 LINE L2 3177 3208 -105 2465 69 7 0 chr6 11186757 11187060 -171228182 + AluY SINE Alu 1 305 -6 264 200 64 129 chr6 11187060 11187095 -171228147 + L2 LINE L2 3208 3244 -69 2050 110 33 20 chr6 11187095 11187394 -171227848 - AluSx SINE Alu -9 303 1 264 200 64 129 chr6 11187394 11187466 -171227776 + L2 LINE L2 3244 3307 -6 791 106 24 8 chr6 11187507 11187630 -171227612 - MER6 DNA MER2_type -258 607 483 2298 119 0 0 chr6 11187662 11187973 -171227269 + AluSq SINE Alu 1 311 -2 1485 175 98 7 chr6 11188393 11188562 -171226680 - AluJo SINE Alu 0 312 160 243 61 0 0 chr6 11188562 11188595 -171226647 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1485 175 98 7 chr6 11188595 11188711 -171226531 - AluJo SINE Alu -152 160 1 975 183 103 18 chr6 11189109 11189333 -171225909 - MER58B DNA MER1_type -15 326 84 968 70 0 0 chr6 11189333 11189448 -171225794 + AluSq SINE Alu 1 115 -197 2736 58 7 21 chr6 11189448 11189947 -171225295 - LTR7 LTR ERV1 -2 448 1 1418 107 0 10 chr6 11189947 11190144 -171225098 + AluSq SINE Alu 109 303 -10 353 227 107 0 chr6 11190810 11190885 -171224357 - MER58B DNA MER1_type -258 83 1 308 268 71 9 chr6 11191083 11191195 -171224047 + MIR SINE MIR 92 210 -52 442 307 0 43 chr6 11191322 11191485 -171223757 + MIR SINE MIR 94 249 -13 232 323 81 16 chr6 11191796 11191920 -171223322 + MIR SINE MIR 9 140 -122 2437 72 0 34 chr6 11192741 11193061 -171222181 - AluY SINE Alu -2 309 1 575 216 18 0 chr6 11193363 11193474 -171221768 + MER81 DNA DNA 2 114 0 2184 105 0 17 chr6 11193850 11194144 -171221098 + AluSq SINE Alu 1 289 -24 246 282 45 18 chr6 11194375 11194485 -171220757 + MIR3 SINE MIR 96 208 0 1403 175 130 0 chr6 11195269 11195538 -171219704 + AluJb SINE Alu 2 305 -7 645 126 42 7 chr6 11195538 11195681 -171219561 + GA-rich Low_complexity Low_complexity 1 148 0 886 185 7 0 chr6 11196017 11196168 -171219074 + FRAM SINE Alu 1 152 -14 351 0 0 0 chr6 11196228 11196267 -171218975 + (TG)n Simple_repeat Simple_repeat 1 39 0 1614 203 10 0 chr6 11198030 11198325 -171216917 - AluJo SINE Alu -14 298 1 810 134 0 0 chr6 11198341 11198453 -171216789 - FLAM_C SINE Alu -18 125 14 1751 183 14 0 chr6 11198909 11199194 -171216048 + AluJb SINE Alu 1 289 -23 2368 138 82 30 chr6 11199737 11200163 -171215079 - MER83 LTR ERV1 0 448 1 672 297 127 13 chr6 11200263 11200719 -171214523 + L2 LINE L2 2794 3309 -4 730 228 60 5 chr6 11200750 11200934 -171214308 - MIR SINE MIR -67 195 2 185 337 12 12 chr6 11200966 11201049 -171214193 - MIR SINE MIR -172 90 8 270 263 50 10 chr6 11201241 11201340 -171213902 + MIR SINE MIR 93 195 -67 288 0 0 0 chr6 11201693 11201725 -171213517 + (TA)n Simple_repeat Simple_repeat 2 33 0 2351 109 0 0 chr6 11201731 11202043 -171213199 - AluSx SINE Alu 0 312 1 266 228 114 0 chr6 11202060 11202139 -171213103 + MIR SINE MIR 118 205 -57 1814 133 15 0 chr6 11202332 11202595 -171212647 - AluSx SINE Alu -14 298 32 246 32 0 0 chr6 11202815 11202846 -171212396 + (T)n Simple_repeat Simple_repeat 1 31 0 1295 158 5 0 chr6 11202865 11203067 -171212175 - AluJo SINE Alu -109 203 1 372 297 113 15 chr6 11203067 11203262 -171211980 + MLT1K LTR MaLR 211 424 -164 289 260 0 0 chr6 11203271 11203348 -171211894 - MER81 DNA DNA -37 77 1 504 259 36 18 chr6 11203352 11203518 -171211724 + MLT1K LTR MaLR 413 581 -7 2351 95 13 0 chr6 11204041 11204345 -171210897 + AluSp SINE Alu 1 308 -5 2150 103 0 7 chr6 11205112 11205404 -171209838 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr6 11207053 11207089 -171208153 + AT_rich Low_complexity Low_complexity 1 36 0 525 276 226 22 chr6 11207212 11207574 -171207668 - L2 LINE L2 0 3313 2878 1739 169 0 13 chr6 11207711 11208012 -171207230 + AluJo SINE Alu 1 297 -15 2079 133 0 0 chr6 11211597 11211891 -171203351 - AluJb SINE Alu -18 294 1 1628 162 75 12 chr6 11212781 11213102 -171202140 + MER2 DNA MER2_type 1 341 -3 242 220 0 0 chr6 11213102 11213152 -171202090 + MER2 DNA MER2_type 296 345 0 22 0 0 0 chr6 11213182 11213204 -171202038 + AT_rich Low_complexity Low_complexity 1 22 0 2411 99 0 3 chr6 11213444 11213758 -171201484 + AluSq SINE Alu 1 313 0 2197 115 0 0 chr6 11213760 11214055 -171201187 + AluSg1 SINE Alu 1 295 -14 49 0 0 0 chr6 11214055 11214104 -171201138 + AT_rich Low_complexity Low_complexity 1 49 0 379 270 71 16 chr6 11214600 11214726 -171200516 - MER5A DNA MER1_type -1 188 56 1504 181 41 11 chr6 11214726 11214996 -171200246 + AluJb SINE Alu 7 284 -28 197 297 94 0 chr6 11215009 11215073 -171200169 - MER5A DNA MER1_type -116 73 4 1996 114 64 0 chr6 11215167 11215448 -171199794 + AluSq SINE Alu 1 299 -14 1028 113 0 0 chr6 11215798 11215939 -171199303 + AluSg/x SINE Alu 166 306 -4 1016 244 29 21 chr6 11215967 11216246 -171198996 + L1ME3A LINE L1 5479 5759 -411 811 132 5 137 chr6 11216256 11216446 -171198796 - MER20 DNA MER1_type 0 219 55 2174 100 10 3 chr6 11216447 11216737 -171198505 + AluSg SINE Alu 2 293 -17 679 223 39 18 chr6 11216762 11216990 -171198252 + L1ME3A LINE L1 5802 5942 -228 738 132 0 83 chr6 11217241 11217385 -171197857 - FRAM SINE Alu -5 171 40 3180 219 191 18 chr6 11217385 11218465 -171196777 + L1MC4 LINE L1 6775 8041 -1 268 250 20 30 chr6 11218447 11218547 -171196695 + L1MB7 LINE L1 5033 5131 -1015 * 26 0 0 0 chr6 11218746 11218772 -171196470 + AT_rich Low_complexity Low_complexity 1 26 0 2228 111 0 7 chr6 11218826 11219124 -171196118 - AluSg SINE Alu -12 298 3 617 193 0 18 chr6 11219125 11219239 -171196003 + Tigger2 DNA MER2_type 2597 2708 -10 2032 113 3 7 chr6 11220521 11220841 -171194401 - AluSq SINE Alu 0 319 1 256 74 0 37 chr6 11220843 11220897 -171194345 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2150 87 4 7 chr6 11220897 11221173 -171194069 - AluSg SINE Alu -28 282 8 2331 86 7 0 chr6 11221180 11221471 -171193771 - AluSx SINE Alu -19 293 1 264 208 56 28 chr6 11221629 11221701 -171193541 + MIR SINE MIR 58 131 -131 3328 181 79 28 chr6 11221754 11222012 -171193230 + L1MB7 LINE L1 5348 5591 -593 1834 128 53 18 chr6 11222012 11222294 -171192948 + AluSx SINE Alu 1 292 -20 2584 73 0 6 chr6 11222295 11222609 -171192633 + AluSq SINE Alu 1 312 -1 3328 181 79 28 chr6 11222609 11223129 -171192113 + L1MB7 LINE L1 5590 6168 -16 3682 86 48 11 chr6 11223960 11224497 -171190745 + L1PA11 LINE L1 5616 6172 -2 334 127 28 14 chr6 11225336 11225407 -171189835 + CT-rich Low_complexity Low_complexity 1 72 0 1827 144 34 7 chr6 11225407 11225699 -171189543 - AluJb SINE Alu -12 300 1 417 278 127 58 chr6 11225863 11226014 -171189228 - MIR SINE MIR -12 250 80 2447 91 3 0 chr6 11226014 11226322 -171188920 + AluSp SINE Alu 1 309 -4 417 278 127 58 chr6 11226322 11226375 -171188867 - MIR SINE MIR -182 80 32 1824 136 4 191 chr6 11227015 11227045 -171188197 + MER47B DNA MER2_type 1 35 -2288 180 0 0 0 chr6 11227045 11227065 -171188177 + (TA)n Simple_repeat Simple_repeat 2 21 0 2350 87 0 3 chr6 11227065 11227377 -171187865 - AluSx SINE Alu -1 311 1 1824 136 4 191 chr6 11227377 11227773 -171187469 + MER47B DNA MER2_type 34 319 -2004 2255 93 10 0 chr6 11227773 11228083 -171187159 - AluSq SINE Alu 0 313 1 1824 136 4 191 chr6 11228083 11228168 -171187074 + MER47B DNA MER2_type 319 418 0 1626 98 9 0 chr6 11228438 11228662 -171186580 + AluSq SINE Alu 1 226 -87 1035 83 0 0 chr6 11228662 11228795 -171186447 + AluSg/x SINE Alu 165 297 -15 2180 91 10 0 chr6 11228848 11229144 -171186098 + AluY SINE Alu 1 299 -12 2283 96 0 0 chr6 11230297 11230598 -171184644 - AluSx SINE Alu -9 303 3 992 180 20 10 chr6 11230635 11230835 -171184407 - AluJo SINE Alu -24 288 87 2056 112 20 0 chr6 11231066 11231360 -171183882 + AluSx SINE Alu 1 300 -12 2120 108 0 40 chr6 11231672 11231995 -171183247 - AluSx SINE Alu -1 311 2 546 150 0 79 chr6 11231995 11232122 -171183120 + Charlie5 DNA MER1_type 2508 2624 0 2167 99 3 10 chr6 11232173 11232477 -171182765 - AluSx SINE Alu -10 302 1 189 74 0 0 chr6 11232567 11232594 -171182648 + (A)n Simple_repeat Simple_repeat 1 27 0 903 156 31 145 chr6 11232775 11233064 -171182178 + AluJo SINE Alu 43 298 -14 274 185 19 0 chr6 11233299 11233353 -171181889 - L3 LINE CR1 -2 1575 1521 490 310 81 66 chr6 11233454 11233802 -171181440 - L3 LINE CR1 -237 1340 988 442 265 166 7 chr6 11233946 11234097 -171181145 - MER5B DNA MER1_type 0 178 4 298 266 73 62 chr6 11234315 11234444 -171180798 + MIR3 SINE MIR 20 158 -50 2107 81 46 3 chr6 11234444 11234729 -171180513 - AluSg SINE Alu -13 297 1 298 266 73 62 chr6 11234729 11234745 -171180497 + MIR3 SINE MIR 158 172 -36 183 42 0 0 chr6 11234753 11234777 -171180465 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 864 119 0 0 chr6 11234795 11234913 -171180329 - FLAM_C SINE Alu -15 118 1 1957 116 0 11 chr6 11235117 11235422 -171179820 - AluSx SINE Alu 0 302 1 197 275 50 0 chr6 11237620 11237700 -171177542 + MIR SINE MIR 124 207 -55 2225 95 0 3 chr6 11238050 11238354 -171176888 - AluSq SINE Alu -4 309 7 24 32 0 0 chr6 11238515 11238546 -171176696 + AT_rich Low_complexity Low_complexity 1 31 0 644 182 41 8 chr6 11238547 11238668 -171176574 - FLAM_C SINE Alu -18 125 1 853 121 15 8 chr6 11238799 11238931 -171176311 + FLAM_C SINE Alu 1 133 0 1103 152 0 45 chr6 11240633 11240831 -171174411 - AluSp SINE Alu 0 313 125 1717 58 4 9 chr6 11241024 11241250 -171173992 + AluSp SINE Alu 75 299 -14 2556 33 0 3 chr6 11241508 11241811 -171173431 - AluY SINE Alu -9 302 1 2073 97 3 22 chr6 11242053 11242364 -171172878 - AluSq SINE Alu -8 305 1 1845 126 43 0 chr6 11243323 11243600 -171171642 + AluSx SINE Alu 10 298 -14 276 231 62 15 chr6 11243878 11243943 -171171299 - L2 LINE L2 -4 3309 3242 264 240 132 66 chr6 11244726 11244847 -171170395 + MIR3 SINE MIR 2 130 -78 816 150 8 8 chr6 11245002 11245135 -171170107 + FLAM_A SINE Alu 1 133 0 1958 131 24 0 chr6 11245214 11245512 -171169730 - AluSx SINE Alu -7 305 1 2218 90 3 10 chr6 11245526 11245838 -171169404 - AluSp SINE Alu 0 313 4 2102 108 13 3 chr6 11245845 11246150 -171169092 - AluSx SINE Alu -4 308 1 315 228 67 40 chr6 11246181 11246330 -171168912 + L1ME4a LINE L1 5968 6120 -1 1991 102 14 10 chr6 11247053 11247348 -171167894 + AluSx SINE Alu 1 296 -16 312 226 157 57 chr6 11247381 11247540 -171167702 + L1ME4a LINE L1 5525 5699 -422 2256 65 3 3 chr6 11247639 11247932 -171167310 + AluY SINE Alu 1 293 -18 1555 162 0 4 chr6 11247932 11248204 -171167038 + AluJb SINE Alu 42 312 0 239 139 0 0 chr6 11248218 11248254 -171166988 + L1ME4a LINE L1 5761 5796 -446 239 272 109 7 chr6 11248372 11248519 -171166723 + L1ME4a LINE L1 5959 6120 -1 2318 67 0 7 chr6 11248718 11249018 -171166224 - AluY SINE Alu -13 298 1 2357 76 3 0 chr6 11249247 11249550 -171165692 + AluSp SINE Alu 1 304 -9 2200 114 58 15 chr6 11249583 11249979 -171165263 + L1MA3 LINE L1 5893 6305 0 23 0 0 0 chr6 11250057 11250080 -171165162 + AT_rich Low_complexity Low_complexity 1 23 0 2006 123 0 0 chr6 11250090 11250374 -171164868 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 11250379 11250400 -171164842 + AT_rich Low_complexity Low_complexity 1 21 0 289 299 92 38 chr6 11252097 11252281 -171162961 - MIR SINE MIR -20 242 49 1213 168 68 97 chr6 11252283 11252447 -171162795 - AluJb SINE Alu -1 301 134 2279 93 0 0 chr6 11252447 11252748 -171162494 - AluSq SINE Alu -12 301 1 1213 168 68 97 chr6 11252748 11252766 -171162476 - AluJb SINE Alu -168 134 117 2106 89 7 0 chr6 11252766 11253078 -171162164 + AluSp SINE Alu 1 314 0 1213 168 68 97 chr6 11253078 11253203 -171162039 - AluJb SINE Alu -185 117 1 288 333 116 21 chr6 11253234 11253423 -171161819 + L2 LINE L2 2953 3159 -113 2301 152 47 19 chr6 11253457 11253884 -171161358 - L1MA6 LINE L1 0 6300 5862 1576 209 30 6 chr6 11253985 11254315 -171160927 + MER58B DNA MER1_type 1 338 -3 692 308 71 5 chr6 11254463 11254687 -171160555 + MIR SINE MIR 21 259 -3 2078 127 0 0 chr6 11255384 11255683 -171159559 - AluSx SINE Alu -13 299 1 2366 137 6 3 chr6 11255766 11256125 -171159117 + MER46B DNA MER2_type 2 236 0 27 0 0 0 chr6 11256167 11256194 -171159048 + AT_rich Low_complexity Low_complexity 1 27 0 269 285 122 16 chr6 11256227 11256350 -171158892 - MIR3 SINE MIR -17 191 56 307 53 0 0 chr6 11256866 11256904 -171158338 - tRNA-Gln-CAG tRNA tRNA -37 38 1 2138 108 0 7 chr6 11257137 11257444 -171157798 - AluSx SINE Alu -3 309 5 1567 168 20 7 chr6 11257459 11257756 -171157486 - L1MB2 LINE L1 -7 6164 5864 1167 166 5 0 chr6 11257934 11258127 -171157115 - MER20 DNA MER1_type 0 219 26 977 184 0 22 chr6 11258209 11258388 -171156854 + FAM SINE Alu 1 175 0 186 179 0 0 chr6 11258401 11258429 -171156813 + L2 LINE L2 3224 3251 -21 346 326 17 65 chr6 11258512 11258753 -171156489 + MIR SINE MIR 12 238 -24 1000 212 37 8 chr6 11258777 11259018 -171156224 - L1MB7 LINE L1 -9 6175 5928 239 53 0 26 chr6 11259181 11259219 -171156023 + (TA)n Simple_repeat Simple_repeat 2 38 0 2287 105 0 0 chr6 11259219 11259523 -171155719 - AluSx SINE Alu -8 304 1 655 216 0 8 chr6 11259979 11260104 -171155138 - FLAM_C SINE Alu -18 125 2 2133 111 0 0 chr6 11260208 11260505 -171154737 - AluSx SINE Alu -15 297 1 406 227 9 18 chr6 11260538 11260648 -171154594 + L1ME4a LINE L1 5946 6054 -67 326 298 48 0 chr6 11261297 11261401 -171153841 - MER103 DNA DNA -45 121 13 864 149 6 43 chr6 11261412 11261573 -171153669 - AluJb SINE Alu -15 297 143 1911 147 0 7 chr6 11261666 11261965 -171153277 - AluJb SINE Alu -15 297 1 1696 264 27 10 chr6 11262651 11263136 -171152106 + L1ME2 LINE L1 124 616 -5780 434 203 16 47 chr6 11263188 11263244 -171151998 + L1ME2 LINE L1 2704 2760 -3455 2066 122 3 0 chr6 11263244 11263548 -171151694 + AluSx SINE Alu 1 305 -7 434 203 16 47 chr6 11263548 11263619 -171151623 + L1ME2 LINE L1 2760 2827 -3388 696 129 54 82 chr6 11263648 11263795 -171151447 + MSTB2 LTR MaLR 260 402 -55 1521 242 14 16 chr6 11263798 11264236 -171151006 + L1ME2 LINE L1 2843 3279 -2936 520 54 68 0 chr6 11264251 11264325 -171150917 - L1PA11 LINE L1 -1 6173 6095 1046 268 37 9 chr6 11264367 11264688 -171150554 + L1ME2 LINE L1 5381 5710 -525 383 237 32 0 chr6 11264688 11264781 -171150461 + MER82 DNA MER2_type 1 96 -557 274 164 36 0 chr6 11264911 11264966 -171150276 - L1M4 LINE L1 -3316 2830 2774 2126 91 7 16 chr6 11265081 11265388 -171149854 - AluSx SINE Alu -8 304 1 784 244 39 19 chr6 11265415 11265620 -171149622 + MER82 DNA MER2_type 444 652 -1 1264 246 48 50 chr6 11265621 11265714 -171149528 + L1ME2 LINE L1 5712 5804 -429 1406 145 130 0 chr6 11265714 11265976 -171149266 + AluSg1 SINE Alu 1 296 -13 1264 246 48 50 chr6 11265976 11266399 -171148843 + L1ME2 LINE L1 5804 6227 -6 1956 127 0 10 chr6 11266478 11266778 -171148464 + AluSx SINE Alu 1 297 -15 2311 94 0 0 chr6 11266816 11267125 -171148117 + AluY SINE Alu 1 309 -2 901 253 42 4 chr6 11267245 11267482 -171147760 - MIR SINE MIR 0 262 17 2026 120 10 0 chr6 11267502 11267803 -171147439 - AluSg SINE Alu -6 304 1 406 319 28 7 chr6 11267832 11267976 -171147266 - MIR SINE MIR -4 258 112 2879 215 25 25 chr6 11268227 11268911 -171146331 + L1MD3 LINE L1 7312 7995 0 2221 99 3 0 chr6 11269664 11269966 -171145276 + AluSq SINE Alu 1 303 -10 207 235 0 0 chr6 11270124 11270175 -171145067 + (CA)n Simple_repeat Simple_repeat 2 52 0 1707 127 21 25 chr6 11271485 11271768 -171143474 - AluSx SINE Alu -30 282 1 560 210 57 16 chr6 11272129 11272253 -171142989 + AluJo/FLAM SINE Alu 3 131 -171 1254 210 15 7 chr6 11272255 11272527 -171142715 + AluSq SINE Alu 1 274 -39 759 192 58 0 chr6 11272543 11272699 -171142543 + AluSq SINE Alu 134 298 -15 683 210 128 63 chr6 11272700 11273020 -171142222 - LTR12 LTR ERV1 -24 690 237 1771 204 275 33 chr6 11273173 11274012 -171141230 - pTR5 LTR ERV1 -266 2172 744 326 292 102 15 chr6 11274016 11274148 -171141094 - MIR SINE MIR -69 139 2 2217 100 0 0 chr6 11274370 11274669 -171140573 + AluSx SINE Alu 1 299 -13 1917 141 3 95 chr6 11275077 11275446 -171139796 - MER1B DNA MER1_type -1 336 2 271 307 99 61 chr6 11275961 11276094 -171139148 + MIR SINE MIR 2 147 -115 2328 141 15 15 chr6 11276094 11276484 -171138758 + MLT1B LTR MaLR 1 390 0 271 307 99 61 chr6 11276484 11276562 -171138680 + MIR SINE MIR 147 221 -41 281 198 23 23 chr6 11276730 11276816 -171138426 + (TA)n Simple_repeat Simple_repeat 1 86 0 5035 173 252 33 chr6 11277202 11278593 -171136649 + pTR5 LTR ERV1 743 2438 0 1510 150 59 7 chr6 11278692 11278979 -171136263 - AluSq SINE Alu -11 302 1 544 228 140 0 chr6 11278979 11279115 -171136127 + AluJo SINE Alu 117 271 -41 1014 198 32 40 chr6 11279126 11279373 -171135869 - MLT2B1 LTR ERVL -274 246 2 2117 95 17 7 chr6 11279394 11279688 -171135554 + AluSx SINE Alu 2 298 -14 2554 219 104 7 chr6 11280162 11280860 -171134382 + L1MD2 LINE L1 5589 6358 -1 815 174 12 12 chr6 11280872 11281033 -171134209 + FRAM SINE Alu 1 161 -15 187 264 125 28 chr6 11281034 11281106 -171134136 - MIR SINE MIR -111 151 73 1910 99 16 60 chr6 11281128 11281442 -171133800 - AluSx SINE Alu -8 304 5 751 192 83 19 chr6 11282005 11282161 -171133081 - AluJ SINE Alu -5 307 142 5360 195 69 76 chr6 11282161 11283743 -171131499 + pTR5 LTR ERV1 31 558 -156 349 318 39 8 chr6 11283758 11283887 -171131355 - AluJ SINE Alu -159 143 11 188 307 176 39 chr6 11284255 11284408 -171130834 - MIR SINE MIR -61 201 28 2113 99 3 7 chr6 11284461 11284763 -171130479 + AluY SINE Alu 1 301 -10 5698 100 27 17 chr6 11284812 11285634 -171129608 + L1PA11 LINE L1 5343 6172 -2 1551 136 97 13 chr6 11285658 11285967 -171129275 - MER46B DNA MER2_type 0 236 27 2173 94 0 10 chr6 11285967 11286266 -171128976 - AluSx SINE Alu -16 296 1 243 156 67 0 chr6 11286417 11286462 -171128780 - MER58 DNA MER1_type 0 2420 2373 1016 112 0 20 chr6 11286467 11286619 -171128623 - L1PA8 LINE L1 -3 6169 6021 605 284 70 96 chr6 11287269 11287647 -171127595 - ERVL LTR ERVL -2270 2726 2361 1972 119 7 7 chr6 11287647 11287941 -171127301 + AluSx SINE Alu 1 294 -18 605 284 70 96 chr6 11287941 11288019 -171127223 - ERVL LTR ERVL -2635 2361 2282 1734 301 50 26 chr6 11288099 11289229 -171126013 - ERVL LTR ERVL -2723 2273 1057 1284 231 104 27 chr6 11289229 11289641 -171125601 - MLT1C LTR MaLR 0 467 24 2336 289 48 11 chr6 11289698 11290428 -171124814 - ERVL LTR ERVL -3953 1043 287 776 129 8 0 chr6 11290948 11291072 -171124170 - L1M3 LINE L1 -730 5450 5326 647 163 8 47 chr6 11291072 11291100 -171124142 - FLAM_A SINE Alu -183 128 100 2282 113 80 0 chr6 11291100 11291437 -171123805 - THE1B LTR MaLR 0 364 1 647 163 8 47 chr6 11291437 11291537 -171123705 - FLAM_A SINE Alu -211 100 5 2489 175 6 219 chr6 11291537 11291748 -171123494 - L1M3 LINE L1 -813 5333 5079 1705 191 0 3 chr6 11291748 11292047 -171123195 + AluJb SINE Alu 1 298 -14 2489 175 6 219 chr6 11292047 11292515 -171122727 - L1M3 LINE L1 -1067 5079 4912 627 80 50 50 chr6 11292515 11292615 -171122627 - AluSg/x SINE Alu -22 288 189 2489 175 6 219 chr6 11292615 11293069 -171122173 - L1M3 LINE L1 -1234 4912 4363 351 98 0 0 chr6 11293269 11293330 -171121912 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 644 362 8 0 chr6 11293639 11293896 -171121346 + MERVL LTR ERVL 4180 4438 -1047 360 304 47 28 chr6 11294173 11294387 -171120855 + MERVL LTR ERVL 4810 5027 -458 268 289 103 0 chr6 11294852 11294949 -171120293 + LTR40a LTR ERVL 407 513 -6 545 353 40 15 chr6 11295279 11295551 -171119691 - ERVL LTR ERVL -4711 1053 775 1542 216 214 55 chr6 11295885 11296380 -171118862 + MLT1E1 LTR MaLR 1 598 -56 1987 118 14 0 chr6 11296380 11296667 -171118575 - AluSx SINE Alu -17 295 5 1542 216 214 55 chr6 11296667 11296735 -171118507 + MLT1E1 LTR MaLR 598 654 0 734 195 57 44 chr6 11296954 11297039 -171118203 - FAM SINE Alu -150 171 89 2185 141 102 8 chr6 11297039 11297089 -171118153 - MSTA LTR MaLR 0 428 384 204 40 0 0 chr6 11297089 11297114 -171118128 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 252 0 0 0 chr6 11297113 11297141 -171118101 + (GA)n Simple_repeat Simple_repeat 2 29 0 2185 141 102 8 chr6 11297114 11297481 -171117761 - MSTA LTR MaLR -44 384 1 734 195 57 44 chr6 11297481 11297554 -171117688 - FAM SINE Alu -232 89 11 1881 123 4 0 chr6 11297572 11297848 -171117394 - AluSx SINE Alu -15 297 21 362 246 94 94 chr6 11297901 11298153 -171117089 - LTR50 LTR ERVL -7 788 534 1489 216 56 50 chr6 11298153 11298265 -171116977 + MLT1C LTR MaLR 3 113 -354 2180 72 0 23 chr6 11298265 11298570 -171116672 + AluSc SINE Alu 1 298 -11 1489 216 56 50 chr6 11298570 11298919 -171116323 + MLT1C LTR MaLR 113 467 0 362 246 94 94 chr6 11298919 11298975 -171116267 - LTR50 LTR ERVL -260 535 480 1889 116 11 4 chr6 11299950 11300258 -171114984 - AluSx SINE Alu 0 316 7 2352 238 176 16 chr6 11300260 11301168 -171114074 - L2 LINE L2 -1929 1385 333 374 65 0 0 chr6 11301312 11301358 -171113884 - MLT1B LTR MaLR -46 344 299 1403 264 109 75 chr6 11301360 11301781 -171113461 + L2 LINE L2 1407 1812 -1502 1815 115 66 3 chr6 11301781 11302069 -171113173 - AluSg SINE Alu -2 308 3 1801 135 14 7 chr6 11302073 11302362 -171112880 - AluJb SINE Alu -20 292 2 1403 264 109 75 chr6 11302362 11302606 -171112636 + L2 LINE L2 1814 2100 -1214 1249 199 25 0 chr6 11302606 11302847 -171112395 + MLT1A1 LTR MaLR 116 362 -3 279 235 49 59 chr6 11302848 11302950 -171112292 + L2 LINE L2 2127 2227 -1087 1020 150 0 17 chr6 11303030 11303203 -171112039 - AluJo SINE Alu -14 298 129 904 71 11 44 chr6 11303203 11303291 -171111951 + (TTCC)n Simple_repeat Simple_repeat 1 262 0 904 71 11 44 chr6 11303291 11303474 -171111768 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 618 236 24 0 chr6 11303612 11303739 -171111503 - AluJo SINE Alu -172 130 1 328 284 161 7 chr6 11303842 11303997 -171111245 + L2 LINE L2 3135 3313 0 1946 125 10 10 chr6 11304099 11304226 -171111016 + AluSq SINE Alu 1 127 -186 186 43 0 0 chr6 11304226 11304249 -171110993 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1946 125 10 10 chr6 11304249 11304418 -171110824 + AluSq SINE Alu 126 297 -16 286 243 0 0 chr6 11304660 11304734 -171110508 - L1MC4 LINE L1 0 8042 7969 694 239 38 129 chr6 11305778 11305891 -171109351 - L1MC4 LINE L1 -259 7783 7661 5145 20 0 17 chr6 11305891 11306493 -171108749 + L1PA4 LINE L1 5561 6152 -3 694 239 38 129 chr6 11306493 11306852 -171108390 - L1MC4 LINE L1 -381 7661 7354 1126 196 222 73 chr6 11307201 11307625 -171107617 + MLT1D LTR MaLR 19 505 0 321 256 16 189 chr6 11307653 11307731 -171107511 + MIR SINE MIR 41 131 -131 1616 118 24 8 chr6 11307731 11307986 -171107256 - AluSx SINE Alu -10 302 44 321 256 16 189 chr6 11307986 11308056 -171107186 + MIR SINE MIR 131 211 -51 387 0 0 0 chr6 11308056 11308099 -171107143 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1641 161 0 37 chr6 11308101 11308399 -171106843 - AluJo SINE Alu -25 287 1 321 256 16 189 chr6 11308399 11308500 -171106742 + MIR SINE MIR 212 250 -12 394 241 23 0 chr6 11308565 11308652 -171106590 - L2 LINE L2 -97 3216 3128 1779 142 28 0 chr6 11308664 11308952 -171106290 - AluJb SINE Alu -16 296 1 1567 142 19 61 chr6 11309788 11309913 -171105329 + AluJo SINE Alu 1 130 -182 2228 88 0 0 chr6 11309913 11310207 -171105035 - AluSc SINE Alu -14 295 2 1567 142 19 61 chr6 11310207 11310391 -171104851 + AluJo SINE Alu 130 297 -15 1570 153 0 39 chr6 11310456 11310765 -171104477 - AluJo SINE Alu 0 309 12 2168 91 0 7 chr6 11310835 11311144 -171104098 + AluSg SINE Alu 1 307 -3 1801 125 43 0 chr6 11311244 11311523 -171103719 + AluJo SINE Alu 1 291 -21 2124 119 0 3 chr6 11311870 11312182 -171103060 - AluSx SINE Alu -1 311 1 252 296 0 0 chr6 11312495 11312620 -171102622 + (CA)n Simple_repeat Simple_repeat 1 125 0 4279 183 58 25 chr6 11313563 11314396 -171100846 - MER21B LTR ERV1 -3 860 1 286 274 113 9 chr6 11315016 11315122 -171100120 - L1ME LINE L1 -510 5611 5495 35 0 0 0 chr6 11315294 11315329 -171099913 + AT_rich Low_complexity Low_complexity 1 35 0 2311 98 9 0 chr6 11315329 11315647 -171099595 - LTR8 LTR ERV1 -104 587 267 279 271 65 77 chr6 11315647 11315957 -171099285 + L1MC4a LINE L1 5709 6016 -105 1726 166 0 14 chr6 11315976 11316260 -171098982 + AluJo SINE Alu 12 291 -21 623 164 9 0 chr6 11316453 11316563 -171098679 - L1MA9 LINE L1 0 6312 6202 340 154 0 39 chr6 11316586 11316664 -171098578 - L1MA9 LINE L1 -186 6126 6052 576 237 147 6 chr6 11316713 11316869 -171098373 - MER5A DNA MER1_type 0 189 12 2151 156 11 8 chr6 11318189 11318549 -171096693 + MLT1A1 LTR MaLR 1 361 -4 939 174 0 0 chr6 11318613 11318785 -171096457 + AluJb SINE Alu 133 304 -8 195 42 0 0 chr6 11318876 11318900 -171096342 + (A)n Simple_repeat Simple_repeat 1 24 0 354 241 42 125 chr6 11318939 11319155 -171096087 + L1MC4 LINE L1 7817 8014 -28 2057 107 3 7 chr6 11319488 11319779 -171095463 - AluSg SINE Alu -20 290 1 1992 122 14 0 chr6 11319947 11320234 -171095008 + AluSg SINE Alu 1 291 -19 1029 100 0 0 chr6 11320319 11320469 -171094773 + AluSg/x SINE Alu 154 303 -7 203 244 0 0 chr6 11320856 11320901 -171094341 - L2 LINE L2 -1 3312 3268 210 261 0 0 chr6 11321193 11321239 -171094003 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 2006 95 0 0 chr6 11321243 11321507 -171093735 - AluSx SINE Alu -12 300 37 1532 219 51 91 chr6 11321624 11321987 -171093255 - L1ME2 LINE L1 -10 6154 5821 2005 92 39 4 chr6 11321987 11322268 -171092974 - AluSx SINE Alu -21 291 1 1532 219 51 91 chr6 11322268 11322474 -171092768 - L1ME2 LINE L1 -343 5821 5608 1740 162 11 96 chr6 11322474 11322634 -171092608 - MER2 DNA MER2_type 0 345 173 775 138 0 0 chr6 11322634 11322750 -171092492 + L1PA16 LINE L1 6042 6157 -9 1740 162 11 96 chr6 11322750 11322966 -171092276 - MER2 DNA MER2_type -172 173 1 2202 103 0 7 chr6 11322994 11323296 -171091946 + AluSq SINE Alu 1 300 -13 1981 138 151 16 chr6 11323399 11323776 -171091466 + MSTA LTR MaLR 1 428 0 7931 18 0 0 chr6 11324468 11325450 -171089792 + L1PA4 LINE L1 5171 6152 -3 21 36 0 0 chr6 11325450 11325478 -171089764 + AT_rich Low_complexity Low_complexity 1 28 0 276 30 0 0 chr6 11325564 11325597 -171089645 + (TG)n Simple_repeat Simple_repeat 2 34 0 2224 95 13 0 chr6 11326621 11326925 -171088317 - AluSp SINE Alu -5 308 1 529 259 36 18 chr6 11327448 11327614 -171087628 - MLT1K LTR MaLR -7 581 413 315 260 0 0 chr6 11327618 11327695 -171087547 + MER81 DNA DNA 1 77 -37 412 323 103 5 chr6 11327704 11327899 -171087343 - MLT1K LTR MaLR -164 424 211 1240 158 5 0 chr6 11327899 11328101 -171087141 + AluJo SINE Alu 1 203 -109 246 32 0 0 chr6 11328120 11328151 -171087091 + (A)n Simple_repeat Simple_repeat 1 31 0 1855 127 14 0 chr6 11328371 11328647 -171086595 + AluSx SINE Alu 32 311 -1 2077 115 20 0 chr6 11328957 11329253 -171085989 - AluSx SINE Alu -10 302 1 992 188 18 31 chr6 11329484 11329713 -171085529 + AluJo SINE Alu 87 312 0 2307 96 0 0 chr6 11329721 11330022 -171085220 + AluSx SINE Alu 3 303 -9 24 77 0 0 chr6 11330838 11330890 -171084352 + GC_rich Low_complexity Low_complexity 1 52 0 279 237 155 21 chr6 11332013 11332110 -171083132 + L2 LINE L2 3204 3313 0 22 56 0 0 chr6 11332233 11332269 -171082973 + AT_rich Low_complexity Low_complexity 1 36 0 210 309 0 53 chr6 11333216 11333310 -171081932 + MIR SINE MIR 58 146 -116 1784 154 17 3 chr6 11333910 11334203 -171081039 - AluSx SINE Alu -15 297 1 269 344 111 16 chr6 11334234 11334423 -171080819 + L2 LINE L2 2953 3159 -113 2229 165 52 19 chr6 11334457 11334882 -171080360 - L1MA6 LINE L1 0 6300 5862 346 357 21 17 chr6 11334982 11335217 -171080025 + MER58 DNA MER1_type 1 236 -105 21 91 0 0 chr6 11335417 11335461 -171079781 + GC_rich Low_complexity Low_complexity 1 44 0 1861 112 14 44 chr6 11335615 11335911 -171079331 - AluSx SINE Alu -24 288 2 515 150 0 79 chr6 11335911 11336038 -171079204 + Charlie5 DNA MER1_type 2508 2624 0 2193 99 3 10 chr6 11336089 11336393 -171078849 - AluSx SINE Alu -10 302 1 189 74 0 0 chr6 11336483 11336510 -171078732 + (A)n Simple_repeat Simple_repeat 1 27 0 646 236 29 0 chr6 11336691 11336831 -171078411 + AluJo SINE Alu 43 186 -126 23 54 0 0 chr6 11336920 11336957 -171078285 + GC_rich Low_complexity Low_complexity 1 37 0 35 41 0 0 chr6 11336974 11337023 -171078219 + GC_rich Low_complexity Low_complexity 1 49 0 2286 109 0 0 chr6 11388426 11388728 -171026514 - AluSx SINE Alu -10 302 1 970 253 90 66 chr6 11388729 11389202 -171026040 - L1MEd LINE L1 -3215 2914 2454 2361 105 3 0 chr6 11389202 11389507 -171025735 + AluSp SINE Alu 1 306 -7 970 253 90 66 chr6 11389507 11390014 -171025228 - L1MEd LINE L1 -3675 2454 1951 668 255 102 42 chr6 11390248 11390807 -171024435 - L1MEd LINE L1 -4726 1584 959 1143 327 70 15 chr6 11390945 11391734 -171023508 - L1 LINE L1 -1438 4708 3877 1068 126 37 37 chr6 11391751 11391942 -171023300 - L1MA9 LINE L1 -4 6308 6118 301 274 109 106 chr6 11392090 11392447 -171022795 + L1M2 LINE L1 772 1129 -5720 189 0 0 0 chr6 11392748 11392769 -171022473 + (TG)n Simple_repeat Simple_repeat 2 22 0 261 0 0 0 chr6 11392803 11392832 -171022410 + (TG)n Simple_repeat Simple_repeat 2 30 0 596 261 29 85 chr6 11393123 11393395 -171021847 + L2 LINE L2 3052 3308 -5 2021 141 0 10 chr6 11393903 11394209 -171021033 - AluSx SINE Alu -9 303 1 395 310 244 0 chr6 11395318 11395515 -171019727 + MIR SINE MIR 17 261 -1 1434 181 79 3 chr6 11395613 11395905 -171019337 - MER33 DNA MER1_type -4 320 7 1144 177 47 0 chr6 11396562 11396794 -171018448 + L1MA4 LINE L1 6054 6296 -4 372 308 84 11 chr6 11396936 11397097 -171018145 + MIR SINE MIR 20 192 -65 182 278 45 99 chr6 11397097 11397320 -171017922 + L2 LINE L2 2925 3135 -178 24 0 0 0 chr6 11397378 11397402 -171017840 + AT_rich Low_complexity Low_complexity 1 24 0 1023 110 0 0 chr6 11397720 11397891 -171017351 - AluSc SINE Alu 0 316 146 271 238 119 66 chr6 11398033 11398169 -171017073 - MIR SINE MIR -66 196 55 217 213 33 0 chr6 11398323 11398384 -171016858 + (TA)n Simple_repeat Simple_repeat 2 64 0 758 182 6 3 chr6 11398977 11399309 -171015933 + CT-rich Low_complexity Low_complexity 1 333 0 283 241 9 103 chr6 11400796 11400912 -171014330 + MER5A DNA MER1_type 40 144 -45 223 184 0 0 chr6 11401159 11401197 -171014045 + L2 LINE L2 3219 3256 -16 2166 94 0 4 chr6 11401197 11401508 -171013734 - AluSx SINE Alu 0 318 9 2172 108 0 7 chr6 11401527 11401835 -171013407 - AluSx SINE Alu 0 312 2 221 348 11 11 chr6 11403124 11403216 -171012026 - L2 LINE L2 -411 2902 2811 493 261 84 28 chr6 11403430 11403572 -171011670 + L2 LINE L2 3163 3312 -1 245 220 40 0 chr6 11403649 11403699 -171011543 + MER2 DNA MER2_type 294 345 0 205 315 157 9 chr6 11404064 11404172 -171011070 - MIR SINE MIR -57 151 28 556 290 113 27 chr6 11404309 11405236 -171010006 + L1ME3A LINE L1 4877 5950 -214 2274 60 3 7 chr6 11405444 11405782 -171009460 + AluY SINE Alu 1 337 0 1128 110 0 7 chr6 11405784 11405965 -171009277 + AluSg/x SINE Alu 129 308 0 816 183 0 71 chr6 11406371 11406540 -171008702 - FRAM SINE Alu -20 156 1 2365 99 0 0 chr6 11407087 11407389 -171007853 - AluSx SINE Alu -10 302 1 24 0 0 0 chr6 11407453 11407477 -171007765 + AT_rich Low_complexity Low_complexity 1 24 0 1619 171 96 56 chr6 11408168 11408648 -171006594 + L1MC5 LINE L1 7046 7544 -417 1488 136 0 0 chr6 11408690 11408903 -171006339 - AluSg/x SINE Alu -15 297 85 222 37 0 0 chr6 11409267 11409294 -171005948 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2323 157 123 26 chr6 11409314 11409778 -171005464 - LTR22 LTR ERVK 0 509 1 2026 96 0 4 chr6 11409778 11410048 -171005194 - AluSx SINE Alu -43 269 1 3041 147 4 7 chr6 11413809 11414273 -171000969 + L1PB3 LINE L1 5688 6150 -4 2214 96 0 0 chr6 11414289 11414571 -171000671 + AluSx SINE Alu 5 286 -26 2296 89 0 29 chr6 11414588 11414903 -171000339 + AluSp SINE Alu 1 306 -7 233 176 0 39 chr6 11415694 11415745 -170999497 + GA-rich Low_complexity Low_complexity 2 50 0 476 259 152 32 chr6 11416047 11416395 -170998847 + L1MEd LINE L1 562 951 -5168 416 240 32 19 chr6 11416420 11416574 -170998668 + L1MEd LINE L1 990 1145 -4974 2283 111 0 0 chr6 11416604 11416901 -170998341 - AluSx SINE Alu -15 297 1 1149 252 91 11 chr6 11416905 11417258 -170997984 + L1MC4a LINE L1 6411 6791 -1017 454 279 63 72 chr6 11417472 11417592 -170997650 - L1MEd LINE L1 -4539 1590 1471 2342 87 7 7 chr6 11417592 11417901 -170997341 - AluY SINE Alu -2 309 1 454 279 63 72 chr6 11417901 11418358 -170996884 - L1MEd LINE L1 -4658 1471 1094 2187 123 0 19 chr6 11418437 11418745 -170996497 + AluSq SINE Alu 1 302 -11 257 326 0 0 chr6 11418861 11418947 -170996295 + L1MC4 LINE L1 6952 7037 -1005 213 167 0 0 chr6 11418966 11419020 -170996222 + A-rich Low_complexity Low_complexity 1 54 0 2691 135 15 36 chr6 11419023 11419414 -170995828 - L1MA8 LINE L1 -2 6289 5908 2078 136 0 19 chr6 11419414 11419722 -170995520 - AluSx SINE Alu -10 302 1 2691 135 15 36 chr6 11419722 11419803 -170995439 - L1MA8 LINE L1 -383 5908 5827 225 83 0 28 chr6 11419804 11419840 -170995402 + L1MA8 LINE L1 5782 5816 -475 873 275 106 13 chr6 11419875 11420177 -170995065 + L2 LINE L2 2984 3313 0 288 257 22 44 chr6 11420192 11420328 -170994914 - L2 LINE L2 -629 2685 2553 343 276 89 8 chr6 11420407 11420530 -170994712 - L3 LINE CR1 -109 1468 1336 2141 128 0 7 chr6 11420612 11420916 -170994326 - AluSx SINE Alu -10 302 1 710 285 88 53 chr6 11420949 11421324 -170993918 + MLT1K LTR MaLR 185 572 -16 2506 82 0 0 chr6 11421331 11421634 -170993608 + AluSx SINE Alu 1 303 -9 237 268 24 37 chr6 11421649 11421731 -170993511 - L3 LINE CR1 -267 1310 1230 198 286 77 22 chr6 11421757 11421848 -170993394 - L3 LINE CR1 -6 1571 1476 2326 105 3 6 chr6 11422466 11422780 -170992462 - AluSq SINE Alu 0 313 1 1916 108 73 14 chr6 11422780 11423067 -170992175 - AluSx SINE Alu -8 304 1 1479 143 4 39 chr6 11423288 11423567 -170991675 - L1MC3 LINE L1 -3 7782 7514 2681 130 28 35 chr6 11423569 11423597 -170991645 + L1MB1 LINE L1 5579 5606 -583 2345 87 0 19 chr6 11423597 11423909 -170991333 + AluSx SINE Alu 3 308 -4 2681 130 28 35 chr6 11423909 11424243 -170990999 + L1MB1 LINE L1 5606 5940 -249 1941 143 0 3 chr6 11424243 11424530 -170990712 + AluJb SINE Alu 11 296 -16 2681 130 28 35 chr6 11424530 11424627 -170990615 + L1MB1 LINE L1 5940 6036 -153 2325 102 3 0 chr6 11424766 11425069 -170990173 - AluSp SINE Alu -9 304 1 24 32 0 0 chr6 11425899 11425930 -170989312 + AT_rich Low_complexity Low_complexity 1 31 0 2292 84 0 29 chr6 11426025 11426333 -170988909 - AluSc SINE Alu -10 299 1 828 253 42 35 chr6 11426333 11426784 -170988458 - L1ME LINE L1 -5086 984 531 1082 277 28 52 chr6 11427051 11427330 -170987912 - L1ME LINE L1 -5651 419 152 1823 114 103 4 chr6 11427330 11427601 -170987641 - AluSx SINE Alu -14 298 1 1082 277 28 52 chr6 11427601 11427747 -170987495 - L1ME LINE L1 -5918 152 4 4795 43 33 41 chr6 11427917 11428970 -170986272 + MER11A LTR ERVK 1 1266 0 772 221 27 72 chr6 11429604 11429826 -170985416 + L2 LINE L2 2208 2419 -895 1287 139 23 59 chr6 11429826 11430117 -170985125 + MER52C LTR ERV1 91 506 -772 269 209 0 47 chr6 11430117 11430265 -170984977 + C-rich Low_complexity Low_complexity 3 143 0 2089 122 20 10 chr6 11430396 11430531 -170984711 + AluSq SINE Alu 1 133 -180 2267 81 42 0 chr6 11430531 11430816 -170984426 + AluSg1 SINE Alu 1 297 -12 2089 122 20 10 chr6 11430816 11430983 -170984259 + AluSq SINE Alu 133 306 -7 485 327 108 35 chr6 11430984 11431382 -170983860 + L3 LINE CR1 995 1421 -156 704 323 48 20 chr6 11431400 11431753 -170983489 - L2 LINE L2 -4 3309 2947 2140 164 25 3 chr6 11431781 11432133 -170983109 + MLT2C1 LTR ERVL 1 480 -40 332 117 6 17 chr6 11432218 11432246 -170982996 + MLT2B1 LTR ERVL 474 474 -46 438 20 0 0 chr6 11432246 11432297 -170982945 + (CA)n Simple_repeat Simple_repeat 2 52 0 332 117 6 17 chr6 11432297 11432339 -170982903 + MLT2B1 LTR ERVL 474 515 -5 2359 104 0 0 chr6 11432587 11432894 -170982348 + AluSc SINE Alu 1 307 -2 2199 101 13 16 chr6 11432910 11433218 -170982024 + AluSp SINE Alu 1 307 -6 1354 207 45 25 chr6 11433940 11434253 -170980989 + MLT2C2 LTR ERVL 120 481 -39 1542 159 3 28 chr6 11434253 11434543 -170980699 - L1MA3 LINE L1 -225 6080 5798 2225 114 0 3 chr6 11434552 11434858 -170980384 - AluSq SINE Alu -8 305 1 4465 182 32 23 chr6 11434858 11434956 -170980286 - L1MC3 LINE L1 -10 7775 7679 2433 132 67 5 chr6 11434956 11435359 -170979883 - MSTA LTR MaLR 0 428 1 4465 182 32 23 chr6 11435359 11436148 -170979094 - L1MC3 LINE L1 -106 7679 6876 2551 174 42 33 chr6 11436148 11436525 -170978717 + MER66B LTR ERV1 1 384 -102 2123 111 10 0 chr6 11436525 11436814 -170978428 + AluSx SINE Alu 1 292 -20 2551 174 42 33 chr6 11436814 11436918 -170978324 + MER66B LTR ERV1 384 486 0 4465 182 32 23 chr6 11436918 11436990 -170978252 - L1MC3 LINE L1 -909 6876 6806 21 36 0 0 chr6 11437311 11437339 -170977903 + AT_rich Low_complexity Low_complexity 1 28 0 2218 97 24 0 chr6 11437665 11437955 -170977287 + AluY SINE Alu 1 297 -14 2381 93 0 10 chr6 11437964 11438274 -170976968 + AluSx SINE Alu 1 307 -5 273 267 139 10 chr6 11438288 11438389 -170976853 + L2 LINE L2 3193 3306 -7 730 201 18 18 chr6 11439047 11439211 -170976031 - FAM SINE Alu -11 164 1 21 0 0 0 chr6 11440293 11440314 -170974928 + AT_rich Low_complexity Low_complexity 1 21 0 358 161 138 0 chr6 11440440 11440527 -170974715 - MER53 DNA DNA -4 185 87 7481 136 26 11 chr6 11440530 11441205 -170974037 + Tigger3b DNA MER2_type 4 667 -2361 3864 68 4 19 chr6 11441205 11441721 -170973521 + L1PA8 LINE L1 5652 6159 -13 246 32 0 0 chr6 11441722 11441753 -170973489 + (TA)n Simple_repeat Simple_repeat 2 32 0 7481 136 26 11 chr6 11441753 11441998 -170973244 + Tigger3b DNA MER2_type 667 907 -2121 2330 117 0 0 chr6 11441998 11442307 -170972935 - AluSp SINE Alu -4 309 1 7481 136 26 11 chr6 11442307 11442593 -170972649 + Tigger3b DNA MER2_type 907 1231 0 563 129 0 0 chr6 11442596 11442681 -170972561 - MER53 DNA DNA -104 85 1 576 324 138 20 chr6 11442800 11443144 -170972098 + L2 LINE L2 1801 2103 -1211 1127 184 29 19 chr6 11443144 11443280 -170971962 + MER3 DNA MER1_type 1 141 -68 1586 161 97 7 chr6 11443280 11443559 -170971683 - AluSx SINE Alu -8 304 1 1127 184 29 19 chr6 11443559 11443629 -170971613 + MER3 DNA MER1_type 141 209 0 576 324 138 20 chr6 11443629 11443938 -170971304 + L2 LINE L2 2103 2531 -783 1094 147 28 0 chr6 11443946 11444114 -170971128 - MER41-int LTR ERV1 -801 6617 3308 * 1108 136 12 0 chr6 11444113 11444275 -170970967 - MER41-int LTR ERV1 -1361 6057 5894 722 157 64 0 chr6 11444272 11444418 -170970824 - MER41-int LTR ERV1 -1242 4588 3616 * 687 206 24 41 chr6 11444443 11444613 -170970629 - LTR9 LTR ERV1 0 612 446 666 267 61 58 chr6 11444621 11444829 -170970413 + L2 LINE L2 2529 2735 -579 2256 94 14 3 chr6 11444829 11445126 -170970116 + AluSq SINE Alu 1 300 -13 2400 75 0 3 chr6 11445126 11445419 -170969823 + AluY SINE Alu 1 292 -19 666 267 61 58 chr6 11445419 11445486 -170969756 + L2 LINE L2 2734 2806 -508 1821 134 144 0 chr6 11445554 11445853 -170969389 - Ricksha DNA DNA -2896 350 9 287 188 26 145 chr6 11446274 11446354 -170968888 + MIR SINE MIR 160 248 -14 396 0 0 0 chr6 11446354 11446398 -170968844 + (TA)n Simple_repeat Simple_repeat 2 45 0 2080 125 0 46 chr6 11446402 11446729 -170968513 - AluJb SINE Alu 0 312 1 287 188 26 145 chr6 11446729 11446760 -170968482 + MIR SINE MIR 251 262 0 1453 183 29 18 chr6 11447228 11447538 -170967704 - AluJo SINE Alu 0 313 1 706 251 96 9 chr6 11449709 11449928 -170965314 + MIR SINE MIR 19 256 -6 1170 47 0 0 chr6 11451143 11451272 -170963970 + AluSp SINE Alu 4 132 -181 2287 109 3 0 chr6 11451274 11451585 -170963657 + AluSx SINE Alu 1 312 0 721 219 133 34 chr6 11452053 11452286 -170962956 - MIR SINE MIR -2 260 5 2216 112 0 7 chr6 11452814 11453110 -170962132 - AluSc SINE Alu -15 294 1 454 212 12 0 chr6 11453120 11453205 -170962037 + MER58B DNA MER1_type 207 292 -49 2190 123 3 0 chr6 11454466 11454775 -170960467 + AluSp SINE Alu 1 310 -3 230 186 10 157 chr6 11455136 11455238 -170960004 + MARNA DNA Mariner 276 362 -224 2255 88 3 0 chr6 11455640 11455950 -170959292 - AluSp SINE Alu 0 311 1 489 34 0 0 chr6 11456044 11456103 -170959139 + (TG)n Simple_repeat Simple_repeat 1 59 0 1978 103 47 23 chr6 11456766 11457066 -170958176 - AluSg SINE Alu -3 307 1 2329 77 10 3 chr6 11457673 11457971 -170957271 - AluSc SINE Alu -9 300 1 199 71 48 0 chr6 11458202 11458244 -170956998 + A-rich Low_complexity Low_complexity 3 46 0 1924 122 30 16 chr6 11458705 11459104 -170956138 + AluJb SINE Alu 5 407 0 2317 85 9 31 chr6 11459780 11460099 -170955143 - AluSx SINE Alu 0 312 1 626 279 65 14 chr6 11460814 11461029 -170954213 - MIR SINE MIR -20 242 17 25 0 0 0 chr6 11461120 11461145 -170954097 + AT_rich Low_complexity Low_complexity 1 25 0 2191 107 0 38 chr6 11461172 11461378 -170953864 - AluSc SINE Alu 0 309 118 2441 84 0 7 chr6 11461378 11461686 -170953556 - AluY SINE Alu -5 306 1 2191 107 0 38 chr6 11461686 11461798 -170953444 - AluSc SINE Alu -191 118 3 232 250 0 0 chr6 11461827 11461871 -170953371 + L2 LINE L2 3246 3289 -24 262 240 0 0 chr6 11462566 11462616 -170952626 - MER20 DNA MER1_type 0 219 170 302 298 70 26 chr6 11463008 11463222 -170952020 + MLT1K LTR MaLR 378 609 -6 1195 204 14 0 chr6 11463222 11463438 -170951804 + MER20 DNA MER1_type 1 219 0 204 147 0 0 chr6 11463913 11463947 -170951295 - L2 LINE L2 -1316 1998 1965 895 228 58 111 chr6 11464139 11464305 -170950937 + MLT1A2 LTR MaLR 1 174 -200 2289 105 7 3 chr6 11464305 11464610 -170950632 + AluSx SINE Alu 6 311 -1 895 228 58 111 chr6 11464610 11464838 -170950404 + MLT1A2 LTR MaLR 174 374 0 1872 143 11 3 chr6 11465399 11465686 -170949556 - AluJo SINE Alu -22 290 2 2197 99 7 7 chr6 11466428 11466720 -170948522 - AluSq SINE Alu -21 292 1 1965 156 0 7 chr6 11467241 11467542 -170947700 + AluJb SINE Alu 1 299 -13 452 200 10 150 chr6 11468066 11468266 -170946976 + MER5B DNA MER1_type 6 177 -1 1985 131 28 3 chr6 11468797 11469080 -170946162 - AluSx SINE Alu -20 292 3 601 96 0 0 chr6 11469353 11469436 -170945806 + AluS SINE Alu 2 84 -229 3122 68 47 9 chr6 11469436 11469861 -170945381 + LTR10D LTR ERV1 1 441 -72 23 0 0 0 chr6 11470654 11470677 -170944565 + AT_rich Low_complexity Low_complexity 1 23 0 232 250 140 30 chr6 11470677 11470777 -170944465 + L2 LINE L2 3154 3264 -8 282 198 0 34 chr6 11471466 11471590 -170943652 + MER5A DNA MER1_type 6 189 0 2180 91 35 0 chr6 11471842 11472129 -170943113 + AluSp SINE Alu 1 297 -16 222 253 121 10 chr6 11472349 11472448 -170942794 - MIR SINE MIR -10 252 143 1867 155 14 0 chr6 11472544 11472834 -170942408 + AluJo SINE Alu 3 296 -16 461 224 65 77 chr6 11472922 11473168 -170942074 + L2 LINE L2 2883 3125 -188 204 378 63 0 chr6 11473318 11473429 -170941813 - L2 LINE L2 -788 2526 2409 522 70 0 0 chr6 11473455 11473526 -170941716 + (CA)n Simple_repeat Simple_repeat 2 72 0 180 0 0 0 chr6 11473701 11473721 -170941521 + (A)n Simple_repeat Simple_repeat 1 20 0 6157 134 41 10 chr6 11474018 11475220 -170940022 + L1MA5 LINE L1 4713 5972 -328 2191 119 3 0 chr6 11475220 11475523 -170939719 + AluSq SINE Alu 1 304 -9 6157 134 41 10 chr6 11475523 11475854 -170939388 + L1MA5 LINE L1 5972 6292 -8 2176 97 3 3 chr6 11475980 11476270 -170938972 + AluSg SINE Alu 1 290 -20 260 266 0 130 chr6 11476699 11476745 -170938497 + MIR SINE MIR 104 154 -108 2635 52 0 3 chr6 11476745 11477055 -170938187 + AluSc SINE Alu 1 309 0 260 266 0 130 chr6 11477055 11477177 -170938065 + MIR SINE MIR 154 250 -12 245 245 50 50 chr6 11477364 11477503 -170937739 + MER5B DNA MER1_type 10 148 -30 2337 75 3 3 chr6 11478426 11478718 -170936524 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr6 11478913 11478935 -170936307 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2310 86 3 0 chr6 11480037 11480329 -170934913 - AluSp SINE Alu -20 293 1 208 310 46 46 chr6 11480445 11480532 -170934710 - MIR3 SINE MIR -10 198 112 2314 71 7 3 chr6 11481339 11481636 -170933606 - AluSq SINE Alu -15 298 1 27 19 0 57 chr6 11481681 11481734 -170933508 + AT_rich Low_complexity Low_complexity 1 50 0 1774 161 10 43 chr6 11481799 11482104 -170933138 + AluSx SINE Alu 1 295 -17 2126 116 20 0 chr6 11482630 11482922 -170932320 - AluSq SINE Alu -12 301 4 391 260 68 73 chr6 11483499 11483691 -170931551 + MIR SINE MIR 2 192 -70 2366 80 3 13 chr6 11483854 11484165 -170931077 - AluSp SINE Alu -5 308 1 1033 88 0 0 chr6 11486632 11486769 -170928473 - AluY SINE Alu -5 306 170 314 45 0 0 chr6 11487891 11487935 -170927307 + L1M2 LINE L1 5588 5631 -669 14174 197 33 29 chr6 11488185 11488573 -170926669 - L1P5 LINE L1 -718 6149 5764 2125 123 0 3 chr6 11488573 11488866 -170926376 - AluSp SINE Alu -17 296 5 14174 197 33 29 chr6 11488866 11489476 -170925766 - L1P5 LINE L1 -1103 5764 5157 2309 98 3 13 chr6 11489476 11489783 -170925459 - AluSx SINE Alu -8 304 1 14174 197 33 29 chr6 11489783 11491444 -170923798 - L1P5 LINE L1 -1710 5157 3503 2300 91 0 10 chr6 11491444 11491740 -170923502 + AluSx SINE Alu 1 293 -19 14174 197 33 29 chr6 11491740 11492826 -170922416 - L1P5 LINE L1 -3364 3503 2422 964 122 0 0 chr6 11492826 11492965 -170922277 + AluY SINE Alu 173 311 0 14174 197 33 29 chr6 11492965 11493271 -170921971 - L1P5 LINE L1 -4445 2422 2118 2453 80 3 0 chr6 11493271 11493571 -170921671 - AluSc SINE Alu -8 301 1 14174 197 33 29 chr6 11493571 11494706 -170920536 - L1P5 LINE L1 -4749 2118 691 765 226 123 57 chr6 11494706 11494943 -170920299 - LTR36 LTR ERV1 -151 460 240 231 61 0 0 chr6 11494943 11494976 -170920266 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2060 108 18 0 chr6 11494976 11495254 -170919988 - AluSx SINE Alu -29 283 1 765 226 123 57 chr6 11495254 11495347 -170919895 - LTR36 LTR ERV1 -370 241 107 560 53 0 0 chr6 11495349 11495424 -170919818 - L1PA11 LINE L1 0 6174 6100 312 85 0 0 chr6 11495461 11495508 -170919734 - L1PA11 LINE L1 -21 6153 6107 456 45 76 0 chr6 11495568 11495634 -170919608 - L1PA11 LINE L1 0 6174 6104 5660 65 39 0 chr6 11495659 11496447 -170918795 - L1PA11 LINE L1 -34 6140 5322 2466 51 3 3 chr6 11496448 11496742 -170918500 - AluY SINE Alu -17 294 1 212 0 36 0 chr6 11496755 11496783 -170918459 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 319 167 229 0 chr6 11496786 11496882 -170918360 - LTR36 LTR ERV1 -491 120 3 189 279 49 16 chr6 11496976 11497037 -170918205 - MIR SINE MIR -80 182 120 1385 66 0 0 chr6 11497203 11497370 -170917872 - AluY SINE Alu -12 299 133 980 147 0 138 chr6 11497503 11497829 -170917413 - MER33 DNA MER1_type 0 324 44 2129 102 0 0 chr6 11498118 11498393 -170916849 - AluSg SINE Alu -7 303 29 2501 67 0 3 chr6 11498409 11498721 -170916521 - AluY SINE Alu 0 311 1 24 32 0 0 chr6 11499156 11499187 -170916055 + AT_rich Low_complexity Low_complexity 1 31 0 2701 71 37 0 chr6 11499735 11500086 -170915156 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr6 11501014 11501035 -170914207 + AT_rich Low_complexity Low_complexity 1 21 0 2202 129 0 3 chr6 11501510 11501813 -170913429 - AluSx SINE Alu -5 307 6 7828 70 9 42 chr6 11502077 11503184 -170912058 - MER11C LTR ERVK 0 1071 1 21 0 0 0 chr6 11503300 11503321 -170911921 + AT_rich Low_complexity Low_complexity 1 21 0 1290 208 4 0 chr6 11503340 11503571 -170911671 - AluJo SINE Alu -76 236 5 1837 137 81 0 chr6 11503643 11503928 -170911314 - AluSq SINE Alu -5 308 1 23 0 0 0 chr6 11504251 11504274 -170910968 + AT_rich Low_complexity Low_complexity 1 23 0 2213 106 6 22 chr6 11504390 11504702 -170910540 + AluSx SINE Alu 1 307 -5 1857 147 7 0 chr6 11505634 11505920 -170909322 + AluJb SINE Alu 7 294 -18 2119 131 0 0 chr6 11506420 11506717 -170908525 + AluJb SINE Alu 1 297 -15 2273 110 0 0 chr6 11507499 11507791 -170907451 - AluSx SINE Alu -20 292 1 915 187 111 0 chr6 11507939 11508137 -170907105 - MER58A DNA MER1_type -4 220 1 774 222 62 0 chr6 11508145 11508321 -170906921 - MER5A DNA MER1_type 0 189 3 2009 136 7 3 chr6 11509134 11509421 -170905821 + AluSx SINE Alu 1 288 -24 932 207 8 68 chr6 11510189 11510256 -170904986 - MER58A DNA MER1_type -2196 224 155 1779 109 109 7 chr6 11510256 11510530 -170904712 - AluSg SINE Alu -6 304 3 932 207 8 68 chr6 11510530 11510699 -170904543 - MER58A DNA MER1_type -2265 155 2 202 179 18 18 chr6 11510756 11510812 -170904430 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2154 91 42 0 chr6 11510952 11511237 -170904005 + AluSx SINE Alu 1 297 -15 12955 188 43 20 chr6 11511249 11513576 -170901666 + L1MA9 LINE L1 3462 5909 -1822 2052 141 0 0 chr6 11513576 11513873 -170901369 + AluY SINE Alu 1 297 -14 12955 188 43 20 chr6 11513873 11515499 -170899743 + L1MA9 LINE L1 5909 7497 -234 295 221 0 0 chr6 11515505 11515573 -170899669 + L1MA9 LINE L1 7600 7667 -64 7221 29 17 7 chr6 11515753 11517041 -170898201 + L1PA4 LINE L1 4855 6151 -4 337 327 81 54 chr6 11518252 11518475 -170896767 - L1ME3A LINE L1 -15 6138 5910 1181 270 100 26 chr6 11518507 11519347 -170895895 - L1ME3A LINE L1 -216 5937 5030 912 232 72 78 chr6 11519351 11519443 -170895799 - L1MEd LINE L1 -3127 3002 2911 2403 88 3 7 chr6 11519443 11519751 -170895491 - AluSx SINE Alu -5 307 1 912 232 72 78 chr6 11519751 11520225 -170895017 - L1MEd LINE L1 -3218 2911 2442 2386 104 3 0 chr6 11520225 11520532 -170894710 + AluSp SINE Alu 1 308 -5 912 232 72 78 chr6 11520532 11520932 -170894310 - L1MEd LINE L1 -3687 2442 2041 468 259 102 42 chr6 11521277 11521833 -170893409 - L1MEd LINE L1 -4729 1581 959 1165 264 105 86 chr6 11521968 11522777 -170892465 - L1M4 LINE L1 -1438 4708 3916 1623 165 32 21 chr6 11522777 11523117 -170892125 - L1MA9 LINE L1 -4 6308 5965 1165 264 105 86 chr6 11523117 11524247 -170890995 - L1M4 LINE L1 -2230 3916 2732 258 214 131 96 chr6 11524372 11524601 -170890641 - L1M4 LINE L1 -3755 2391 2155 314 263 15 22 chr6 11524870 11525007 -170890235 - L1M4 LINE L1 -3279 2867 2732 1455 188 12 4 chr6 11525441 11525696 -170889546 - AluJb SINE Alu -55 257 1 252 246 18 0 chr6 11525793 11525850 -170889392 + L2 LINE L2 3255 3312 -1 1941 151 10 7 chr6 11525879 11526183 -170889059 + AluJb SINE Alu 1 305 -7 200 220 140 0 chr6 11527077 11527127 -170888115 + L3 LINE CR1 1429 1485 -92 21 0 0 0 chr6 11527531 11527552 -170887690 + AT_rich Low_complexity Low_complexity 1 21 0 996 254 166 15 chr6 11528369 11528767 -170886475 - L2 LINE L2 0 3313 2856 398 264 236 0 chr6 11530383 11530565 -170884677 + MIR SINE MIR 18 242 -20 2174 112 60 65 chr6 11531015 11531372 -170883870 + L1MA9 LINE L1 5851 6208 -104 925 125 0 23 chr6 11531372 11531500 -170883742 - FLAM_C SINE Alu -8 125 1 2174 112 60 65 chr6 11531500 11531563 -170883679 + L1MA9 LINE L1 6208 6271 -41 1784 191 0 7 chr6 11531563 11531866 -170883376 - AluJo SINE Alu -11 301 1 2174 112 60 65 chr6 11531866 11531907 -170883335 + L1MA9 LINE L1 6271 6311 -1 1813 164 0 17 chr6 11532267 11532554 -170882688 + AluJo SINE Alu 1 282 -30 2316 157 82 17 chr6 11532893 11533295 -170881947 - MSTA LTR MaLR 0 428 1 2528 145 19 10 chr6 11533907 11534320 -170880922 + L1MB4 LINE L1 5764 6180 0 2574 71 3 0 chr6 11534325 11534635 -170880607 + AluSp SINE Alu 1 311 -2 2265 100 0 7 chr6 11535531 11535832 -170879410 + AluSq SINE Alu 1 299 -14 2197 188 70 26 chr6 11537227 11537727 -170877515 - Charlie1b DNA MER1_type -1 522 1 2442 68 7 0 chr6 11538699 11538993 -170876249 - AluY SINE Alu -14 297 2 199 329 14 43 chr6 11539051 11539121 -170876121 - L2 LINE L2 -2 3311 3244 1042 177 39 0 chr6 11539121 11539302 -170875940 - MER46A DNA MER2_type 0 236 49 44 0 0 0 chr6 11539302 11539346 -170875896 + AT_rich Low_complexity Low_complexity 1 44 0 897 287 74 67 chr6 11539558 11540224 -170875018 - L2 LINE L2 -265 3048 2310 2084 127 3 0 chr6 11540568 11540896 -170874346 + AluSq SINE Alu 1 329 0 665 256 123 37 chr6 11540898 11541222 -170874020 + L1M4 LINE L1 3730 4081 -2065 184 174 0 65 chr6 11541306 11541352 -170873890 + MER5B DNA MER1_type 123 165 -13 349 289 77 37 chr6 11541385 11541710 -170873532 + L1ME4a LINE L1 3073 3410 -2736 731 259 109 79 chr6 11541769 11542192 -170873050 + L1ME4a LINE L1 3333 3781 -2365 378 0 0 0 chr6 11542192 11542234 -170873008 + (TG)n Simple_repeat Simple_repeat 2 43 0 731 259 109 79 chr6 11542234 11542427 -170872815 + L1ME4a LINE L1 3781 3967 -2179 823 305 185 36 chr6 11542549 11543517 -170871725 - L2 LINE L2 -2041 1273 162 388 283 165 40 chr6 11544062 11544096 -170871146 + L1ME4a LINE L1 5617 5645 -476 2565 46 0 13 chr6 11544096 11544401 -170870841 - AluY SINE Alu -10 301 1 388 283 165 40 chr6 11544401 11544638 -170870604 + L1ME4a LINE L1 5645 5922 -199 546 327 143 35 chr6 11544690 11545174 -170870068 - L2 LINE L2 -30 3283 2756 555 284 170 46 chr6 11545263 11545675 -170869567 - L2 LINE L2 -800 2514 2052 226 167 0 0 chr6 11545683 11545719 -170869523 + U2 snRNA snRNA 1 36 -152 2287 87 0 7 chr6 11545927 11546225 -170869017 + AluSc SINE Alu 14 309 0 213 244 0 24 chr6 11546383 11546420 -170868822 + (TA)n Simple_repeat Simple_repeat 2 38 -43 1924 123 34 3 chr6 11546420 11546713 -170868529 - AluSq SINE Alu -11 302 1 213 244 0 24 chr6 11546713 11546757 -170868485 + (TA)n Simple_repeat Simple_repeat 38 81 0 276 276 126 10 chr6 11546763 11546956 -170868286 - L1MC/D LINE L1 -302 5819 5663 754 254 44 128 chr6 11547122 11547426 -170867816 - MLT1J LTR MaLR -14 497 256 789 167 0 43 chr6 11547426 11547564 -170867678 - FLAM_C SINE Alu 0 133 2 754 254 44 128 chr6 11547564 11547799 -170867443 - MLT1J LTR MaLR -255 256 3 2102 114 7 0 chr6 11547992 11548272 -170866970 + AluSx SINE Alu 5 286 -26 2069 133 0 0 chr6 11549150 11549436 -170865806 - AluSg1 SINE Alu -23 286 1 2170 102 3 7 chr6 11549828 11550123 -170865119 - AluSx SINE Alu -18 294 1 207 221 44 29 chr6 11550526 11550594 -170864648 - L2 LINE L2 -212 3060 2992 322 314 91 43 chr6 11551056 11551266 -170863976 - L2 LINE L2 -9 3263 3044 4496 112 26 9 chr6 11551857 11552512 -170862730 - L1PA16 LINE L1 -13 6153 5488 252 0 0 0 chr6 11553016 11553044 -170862198 + (TA)n Simple_repeat Simple_repeat 2 29 0 2391 94 3 0 chr6 11553044 11553352 -170861890 - AluSx SINE Alu -3 309 1 278 210 25 118 chr6 11553728 11553795 -170861447 - MER102a DNA MER1_type -1088 329 276 1889 106 92 21 chr6 11553795 11554077 -170861165 + AluSx SINE Alu 1 302 -10 278 210 25 118 chr6 11554077 11554128 -170861114 - MER102a DNA MER1_type -1141 276 222 25 0 0 0 chr6 11555772 11555797 -170859445 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 11556012 11556047 -170859195 + AT_rich Low_complexity Low_complexity 1 35 0 2222 120 0 0 chr6 11558753 11559053 -170856189 - AluSx SINE Alu -10 302 3 21638 31 10 2 chr6 11559098 11562357 -170852885 - L1PA3 LINE L1 -1 6154 2881 2297 104 3 0 chr6 11563026 11563325 -170851917 + AluSp SINE Alu 7 306 -7 2149 95 50 0 chr6 11564108 11564391 -170850851 + AluSq SINE Alu 1 297 -16 340 154 77 0 chr6 11565991 11566056 -170849186 + MIR SINE MIR 173 242 -20 350 291 93 7 chr6 11566131 11566282 -170848960 + MIR SINE MIR 69 232 -30 419 259 56 62 chr6 11567145 11567246 -170847996 - MER112 DNA MER1_type -1 259 157 2358 65 0 0 chr6 11567246 11567560 -170847682 + AluSc SINE Alu 1 314 0 419 259 56 62 chr6 11567560 11567619 -170847623 - MER112 DNA MER1_type -103 157 99 805 176 0 0 chr6 11567650 11567769 -170847473 + FLAM_C SINE Alu 2 120 -23 1808 142 0 62 chr6 11568421 11568746 -170846496 - AluSx SINE Alu -7 305 1 738 174 0 0 chr6 11568807 11568922 -170846320 + FRAM SINE Alu 53 167 -9 2454 88 0 3 chr6 11568923 11569229 -170846013 + AluSq SINE Alu 1 305 -8 240 234 0 16 chr6 11569229 11569293 -170845949 - MER112 DNA MER1_type -181 79 17 2004 94 8 4 chr6 11571160 11571426 -170843816 + AluY SINE Alu 35 301 -10 526 101 0 0 chr6 11571436 11571505 -170843737 + AluS SINE Alu 3 71 -242 2092 76 0 0 chr6 11571506 11571757 -170843485 + AluSq SINE Alu 41 291 -22 700 234 101 102 chr6 11571835 11572586 -170842656 - L1MC5 LINE L1 -50 7911 7238 392 268 109 45 chr6 11572577 11572637 -170842605 - L1MC4 LINE L1 -760 7201 7146 * 2376 125 105 20 chr6 11572637 11573029 -170842213 + MSTB LTR MaLR 1 425 -1 392 268 109 45 chr6 11573029 11574119 -170841123 - L1MC4 LINE L1 -815 7146 5990 2358 89 0 0 chr6 11574119 11574411 -170840831 - AluSg SINE Alu -17 293 2 392 268 109 45 chr6 11574411 11574709 -170840533 - L1MC4 LINE L1 -1971 5990 5712 373 336 0 42 chr6 11575437 11575580 -170839662 + L2 LINE L2 3134 3270 -2 261 386 0 11 chr6 11575577 11575665 -170839577 - MIR SINE MIR -105 103 17 * 963 259 95 30 chr6 11576619 11576955 -170838287 + L2 LINE L2 2526 2883 -431 186 207 52 17 chr6 11576942 11577000 -170838242 + L2 LINE L2 3005 3064 -249 * 228 278 74 97 chr6 11577579 11577795 -170837447 - MIR SINE MIR -18 244 34 4077 39 2 2 chr6 11577879 11578345 -170836897 - L1PA8 LINE L1 -4 6168 5703 2163 111 0 3 chr6 11578538 11578835 -170836407 + AluSx SINE Alu 1 296 -16 209 227 0 0 chr6 11579128 11579172 -170836070 + T-rich Low_complexity Low_complexity 1 44 0 328 314 51 0 chr6 11579460 11579578 -170835664 + MIR3 SINE MIR 79 202 -6 2115 128 0 0 chr6 11579615 11579912 -170835330 + AluSx SINE Alu 1 297 -15 373 261 54 23 chr6 11580607 11580737 -170834505 - MIR SINE MIR -94 168 35 649 210 6 60 chr6 11581749 11581916 -170833326 - MIR SINE MIR -10 252 95 2490 158 35 26 chr6 11581938 11582401 -170832841 + MLT1C LTR MaLR 1 467 0 345 308 48 0 chr6 11583790 11583894 -170831348 - L2 LINE L2 0 3272 3164 1083 120 87 22 chr6 11583972 11584238 -170831004 - MER44D DNA MER2_type -36 669 1 616 338 86 19 chr6 11584263 11584698 -170830544 - L2 LINE L2 -236 3036 2590 2384 97 0 0 chr6 11584762 11585060 -170830182 - AluSg SINE Alu -12 298 1 2435 75 0 7 chr6 11585821 11586126 -170829116 + AluY SINE Alu 1 303 -8 255 274 102 59 chr6 11587501 11587687 -170827555 - L2 LINE L2 0 3313 3120 469 288 52 69 chr6 11588509 11588742 -170826500 + MER115 DNA AcHobo 1 229 -464 715 224 14 5 chr6 11588869 11589007 -170826235 + L1ME1 LINE L1 5522 5664 -501 1494 135 9 0 chr6 11589007 11589248 -170825994 + AluSg/x SINE Alu 73 315 0 715 224 14 5 chr6 11589248 11589275 -170825967 + L1ME1 LINE L1 5664 5689 -476 1486 155 71 7 chr6 11589642 11589938 -170825304 + L1ME1 LINE L1 5670 5984 -182 469 302 11 0 chr6 11589952 11590131 -170825111 + L1MEc LINE L1 1615 1795 -4601 317 247 0 37 chr6 11590839 11590920 -170824322 + CT-rich Low_complexity Low_complexity 3 80 0 265 241 0 0 chr6 11591615 11591669 -170823573 + Tigger8 DNA MER2_type 32 85 -581 341 231 188 17 chr6 11591930 11592047 -170823195 - MIR SINE MIR -14 248 112 437 194 279 30 chr6 11592480 11592645 -170822597 + L2 LINE L2 3108 3313 0 2130 164 47 28 chr6 11592807 11593276 -170821966 + Looper DNA T2_type 89 566 -992 519 239 197 0 chr6 11593277 11593419 -170821823 - MER5A DNA MER1_type -11 178 9 558 310 146 22 chr6 11593724 11594127 -170821115 - L3 LINE CR1 -495 1082 630 183 42 0 0 chr6 11594469 11594493 -170820749 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2091 118 7 0 chr6 11594495 11594782 -170820460 - AluSx SINE Alu -23 289 1 242 316 36 42 chr6 11595814 11596026 -170819216 + L2 LINE L2 2779 2991 -281 21 57 0 0 chr6 11596446 11596481 -170818761 + AT_rich Low_complexity Low_complexity 1 35 0 181 308 154 0 chr6 11598840 11598931 -170816311 - MIR SINE MIR -97 165 61 891 100 76 0 chr6 11601613 11601824 -170813418 - L1MA8 LINE L1 -7 6284 6011 717 311 56 28 chr6 11602130 11602452 -170812790 - L3 LINE CR1 -50 1527 1197 350 312 150 23 chr6 11602587 11602760 -170812482 - L3 LINE CR1 -396 1181 987 556 250 17 72 chr6 11603472 11603652 -170811590 - MIR SINE MIR -22 240 71 1066 170 22 36 chr6 11603763 11603987 -170811255 + AluJb SINE Alu 87 307 -5 509 275 50 27 chr6 11604023 11604230 -170811012 + MIR SINE MIR 41 249 -13 493 179 82 30 chr6 11604670 11604804 -170810438 + MIR SINE MIR 116 256 -6 2456 71 0 3 chr6 11605221 11605530 -170809712 - AluY SINE Alu -3 308 1 665 293 168 25 chr6 11605738 11606665 -170808577 - L1ME2 LINE L1 -214 5950 4877 205 315 157 9 chr6 11606802 11606910 -170808332 + MIR SINE MIR 28 151 -57 180 0 0 0 chr6 11607081 11607101 -170808141 + (A)n Simple_repeat Simple_repeat 1 20 0 245 220 40 0 chr6 11607276 11607326 -170807916 - MER2 DNA MER2_type 0 345 294 493 261 84 28 chr6 11607403 11607545 -170807697 - L2 LINE L2 -1 3312 3163 221 348 11 11 chr6 11607759 11607851 -170807391 + L2 LINE L2 2811 2902 -411 2172 108 0 7 chr6 11609140 11609448 -170805794 + AluSx SINE Alu 2 312 0 2167 94 0 4 chr6 11609467 11609778 -170805464 + AluSx SINE Alu 9 318 0 223 184 0 0 chr6 11609778 11609816 -170805426 - L2 LINE L2 -16 3256 3219 283 241 9 103 chr6 11610063 11610179 -170805063 - MER5A DNA MER1_type -45 144 40 758 182 6 3 chr6 11611666 11611998 -170803244 + GA-rich Low_complexity Low_complexity 1 333 0 217 213 33 0 chr6 11612591 11612652 -170802590 + (TA)n Simple_repeat Simple_repeat 1 63 0 271 238 119 66 chr6 11612806 11612942 -170802300 + MIR SINE MIR 55 196 -66 1024 110 0 0 chr6 11613084 11613255 -170801987 + AluSc SINE Alu 146 316 0 24 0 0 0 chr6 11613573 11613597 -170801645 + AT_rich Low_complexity Low_complexity 1 24 0 182 278 45 99 chr6 11613655 11613878 -170801364 - L2 LINE L2 -178 3135 2925 372 308 84 11 chr6 11613878 11614039 -170801203 - MIR SINE MIR -65 143 20 1144 177 47 0 chr6 11614181 11614413 -170800829 - L1MA4 LINE L1 -4 6296 6054 1434 181 79 3 chr6 11615070 11615362 -170799880 + MER33 DNA MER1_type 7 320 -4 395 310 244 0 chr6 11615460 11615657 -170799585 - MIR SINE MIR -1 261 17 2021 141 0 10 chr6 11616766 11617072 -170798170 + AluSx SINE Alu 1 303 -9 596 261 29 85 chr6 11617580 11617852 -170797390 - L2 LINE L2 -5 3308 3052 261 0 0 0 chr6 11618143 11618172 -170797070 + (CA)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr6 11618206 11618227 -170797015 + (CA)n Simple_repeat Simple_repeat 2 22 0 301 274 109 106 chr6 11618528 11618885 -170796357 - L1M2 LINE L1 -5720 1129 772 210 288 8 40 chr6 11619072 11619197 -170796045 + C-rich Low_complexity Low_complexity 6 126 0 23 54 0 0 chr6 11619257 11619294 -170795948 + GC_rich Low_complexity Low_complexity 1 37 0 2225 98 3 10 chr6 11619871 11620177 -170795065 + AluJb SINE Alu 4 307 -5 564 264 43 6 chr6 11620530 11620693 -170794549 + MIR SINE MIR 62 230 -32 429 238 67 0 chr6 11620829 11620934 -170794308 - L2 LINE L2 -1 3271 3160 225 260 0 68 chr6 11621453 11621526 -170793716 - MER5A DNA MER1_type -115 74 7 2318 96 0 0 chr6 11621963 11622256 -170792986 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr6 11622256 11622277 -170792965 + AT_rich Low_complexity Low_complexity 1 21 0 950 234 56 9 chr6 11623358 11623572 -170791670 + MER58A DNA MER1_type 1 224 0 27 49 0 0 chr6 11623749 11623790 -170791452 + AT_rich Low_complexity Low_complexity 1 41 0 3796 159 18 35 chr6 11623829 11624672 -170790570 - L1PB4 LINE L1 -7 6165 5354 2183 125 0 3 chr6 11624672 11624969 -170790273 + AluSg SINE Alu 1 296 -14 3796 159 18 35 chr6 11624969 11625429 -170789813 - L1PB4 LINE L1 -818 5354 4888 578 307 33 37 chr6 11625440 11625681 -170789561 - L2 LINE L2 -243 3070 2831 22 0 0 0 chr6 11625997 11626019 -170789223 + AT_rich Low_complexity Low_complexity 1 22 0 2166 114 7 0 chr6 11626548 11626846 -170788396 - AluSx SINE Alu -12 300 1 539 241 0 9 chr6 11626847 11626955 -170788287 - FLAM_A SINE Alu -28 114 8 2390 91 0 7 chr6 11627221 11627528 -170787714 + AluSq SINE Alu 1 305 -8 1302 109 171 0 chr6 11627802 11627995 -170787247 + MER30 DNA MER1_type 4 229 -1 468 239 79 65 chr6 11628144 11628321 -170786921 - MIR SINE MIR -62 146 21 2413 190 114 44 chr6 11628689 11628991 -170786251 - L1MC5 LINE L1 -33 7928 7649 2230 114 0 0 chr6 11628991 11629288 -170785954 + AluSx SINE Alu 1 297 -15 2413 190 114 44 chr6 11629288 11629810 -170785432 - L1MC5 LINE L1 -312 7649 7046 24 0 0 0 chr6 11630501 11630525 -170784717 + AT_rich Low_complexity Low_complexity 1 24 0 2365 99 0 0 chr6 11630589 11630891 -170784351 + AluSx SINE Alu 1 302 -10 816 183 0 71 chr6 11631438 11631607 -170783635 + FRAM SINE Alu 1 156 -20 2000 113 0 34 chr6 11632013 11632196 -170783046 - AluSx SINE Alu 0 308 120 438 36 0 0 chr6 11632196 11632252 -170782990 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 2312 53 3 7 chr6 11632252 11632534 -170782708 - AluY SINE Alu -30 281 1 2000 113 0 34 chr6 11632534 11632667 -170782575 - AluSx SINE Alu -186 122 1 2234 78 32 0 chr6 11632946 11633227 -170782015 - AluY SINE Alu -21 290 1 267 239 0 0 chr6 11633265 11633311 -170781931 - AluSp SINE Alu -122 181 136 2298 90 7 3 chr6 11633707 11634007 -170781235 + AluSc SINE Alu 1 301 -8 2416 73 0 13 chr6 11634051 11634366 -170780876 - AluY SINE Alu 0 311 1 2510 62 0 3 chr6 11634417 11634721 -170780521 + AluY SINE Alu 1 303 -8 5653 212 38 38 chr6 11634907 11635432 -170779810 - L1M LINE L1 -748 5398 4875 1829 129 0 0 chr6 11635432 11635680 -170779562 - AluSx SINE Alu -19 293 46 5653 212 38 38 chr6 11635680 11636583 -170778659 - L1M LINE L1 -1271 4875 3991 2152 121 10 10 chr6 11636583 11636888 -170778354 + AluSq SINE Alu 1 305 -8 5653 212 38 38 chr6 11636888 11637042 -170778200 - L1M LINE L1 -2155 3991 3839 779 211 17 0 chr6 11637034 11637214 -170778028 - L1M4 LINE L1 -3139 3007 2825 * 1380 249 51 24 chr6 11637237 11637651 -170777591 + L1M4 LINE L1 3286 3710 -2436 373 123 0 0 chr6 11637645 11637702 -170777540 - L1MEc LINE L1 -3435 2780 2724 * 1016 275 56 13 chr6 11637772 11638146 -170777096 - L1MEc LINE L1 -4351 2045 1656 752 264 59 76 chr6 11638217 11638619 -170776623 + MLT1H LTR MaLR 39 461 -88 255 282 145 17 chr6 11638625 11638742 -170776500 - MER97b DNA MER1_type? -917 136 5 2138 114 7 3 chr6 11638821 11639111 -170776131 + AluSx SINE Alu 1 291 -21 2234 120 13 0 chr6 11639119 11639418 -170775824 + AluSx SINE Alu 1 303 -9 258 260 64 81 chr6 11640192 11640365 -170774877 + LTR16A LTR ERVL 52 221 -229 392 197 137 17 chr6 11640406 11640523 -170774719 + LTR16A LTR ERVL 320 450 0 1718 188 55 6 chr6 11640537 11640867 -170774375 + MLT1A1 LTR MaLR 20 365 0 796 153 164 56 chr6 11640946 11641214 -170774028 - L1MC5 LINE L1 -176 7785 7489 384 275 215 0 chr6 11641356 11641556 -170773686 - MIR SINE MIR -18 244 2 1077 274 72 26 chr6 11642992 11643379 -170771863 + MLT1I LTR MaLR 1 405 -4 21 57 0 0 chr6 11643553 11643588 -170771654 + AT_rich Low_complexity Low_complexity 1 35 0 2478 77 3 7 chr6 11644173 11644483 -170770759 + AluY SINE Alu 1 309 -2 1678 195 76 11 chr6 11644688 11645057 -170770185 - MSTD LTR MaLR 0 396 4 2053 118 3 26 chr6 11645149 11645455 -170769787 + AluSx SINE Alu 1 299 -13 2195 132 0 0 chr6 11646081 11646392 -170768850 - AluSx SINE Alu -1 311 1 2354 117 27 46 chr6 11646962 11647126 -170768116 + THE1B LTR MaLR 1 167 -197 2069 135 10 3 chr6 11647126 11647430 -170767812 - AluSq SINE Alu -7 306 1 2354 117 27 46 chr6 11647430 11647634 -170767608 + THE1B LTR MaLR 167 362 -2 2279 64 19 45 chr6 11647634 11647947 -170767295 + AluY SINE Alu 1 305 -6 201 311 0 0 chr6 11648073 11648134 -170767108 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 254 253 169 0 chr6 11648328 11648411 -170766831 - MER5A DNA MER1_type -83 106 10 307 210 328 36 chr6 11648785 11648920 -170766322 + MER112 DNA MER1_type 1 95 -161 2285 112 3 0 chr6 11648920 11649215 -170766027 - AluSp SINE Alu -17 296 1 307 210 328 36 chr6 11649215 11649274 -170765968 + MER112 DNA MER1_type 95 252 -4 1951 128 3 3 chr6 11649379 11649661 -170765581 - AluSx SINE Alu -12 300 19 676 204 26 0 chr6 11649881 11650033 -170765209 + MIR SINE MIR 2 157 -105 1780 125 93 3 chr6 11650033 11650322 -170764920 - MER46B DNA MER2_type -3 233 44 210 217 0 0 chr6 11650340 11650386 -170764856 + MIR SINE MIR 153 198 -64 582 239 60 16 chr6 11652044 11652228 -170763014 + Charlie7 DNA MER1_type 53 244 -2368 240 209 15 30 chr6 11652329 11652396 -170762846 + Charlie7 DNA MER1_type 1520 1585 -1027 1010 258 59 7 chr6 11652435 11652722 -170762520 - LTR16A LTR ERVL 0 450 149 2039 136 51 20 chr6 11652854 11653206 -170762036 + MLT1A1 LTR MaLR 3 365 0 1084 228 49 137 chr6 11653206 11653398 -170761844 + Charlie7 DNA MER1_type 1653 1860 -752 1436 120 0 5 chr6 11653398 11653615 -170761627 - L1PA14 LINE L1 0 6161 5946 1084 228 49 137 chr6 11653615 11653754 -170761488 + Charlie7 DNA MER1_type 1860 1918 -694 461 196 52 0 chr6 11653754 11653851 -170761391 + U13 snRNA snRNA 1 102 -2 1084 228 49 137 chr6 11653851 11654074 -170761168 + Charlie7 DNA MER1_type 1918 2159 -453 1038 164 91 34 chr6 11654076 11654284 -170760958 + AluJo SINE Alu 87 306 -6 2386 234 79 60 chr6 11654359 11654446 -170760796 - MER21B LTR ERV1 -58 805 721 1921 121 67 0 chr6 11654446 11654728 -170760514 - AluSg SINE Alu -9 301 1 2386 234 79 60 chr6 11654728 11655391 -170759851 - MER21B LTR ERV1 -142 721 37 2695 122 46 2 chr6 11655391 11655801 -170759441 - MSTA LTR MaLR 0 428 1 2386 234 79 60 chr6 11655801 11655821 -170759421 - MER21B LTR ERV1 -826 37 19 499 203 0 0 chr6 11655843 11655922 -170759320 - MER21B LTR ERV1 -773 90 12 249 256 47 54 chr6 11655933 11656062 -170759180 + Charlie7 DNA MER1_type 2199 2326 -286 1302 218 124 30 chr6 11656069 11656186 -170759056 + MLT1C LTR MaLR 1 106 -361 2351 97 3 3 chr6 11656186 11656495 -170758747 - AluSq SINE Alu -4 309 1 1302 218 124 30 chr6 11656495 11656804 -170758438 + MLT1C LTR MaLR 106 467 0 317 184 197 7 chr6 11657193 11657340 -170757902 + Charlie7 DNA MER1_type 2397 2571 -41 2197 102 10 3 chr6 11657843 11658137 -170757105 - AluSq SINE Alu -17 296 1 605 276 124 18 chr6 11658404 11658629 -170756613 + MLT2F LTR ERVL 1 249 -414 1807 181 83 39 chr6 11658667 11659098 -170756144 + MLT1C LTR MaLR 18 467 0 1038 316 17 44 chr6 11659098 11659503 -170755739 + MLT2F LTR ERVL 263 656 -7 2126 119 14 3 chr6 11659569 11659862 -170755380 + AluSx SINE Alu 1 296 -16 284 306 132 36 chr6 11659892 11659996 -170755246 - MIR SINE MIR -12 250 157 2524 140 0 65 chr6 11659996 11660245 -170754997 - Tigger2a DNA MER2_type -2274 434 227 2311 106 0 6 chr6 11660245 11660556 -170754686 + AluSg SINE Alu 2 310 0 2524 140 0 65 chr6 11660556 11660770 -170754472 - Tigger2a DNA MER2_type -2481 227 1 284 306 132 36 chr6 11660770 11660884 -170754358 - MIR SINE MIR -105 157 11 2260 107 0 3 chr6 11661202 11661500 -170753742 + AluSx SINE Alu 2 298 -14 429 269 100 19 chr6 11661633 11661793 -170753449 + MER112 DNA MER1_type 66 238 -22 3643 162 15 126 chr6 11661793 11663321 -170751921 + pTR5 LTR ERV1 761 2606 0 2743 48 0 0 chr6 11664049 11664360 -170750882 - AluY SINE Alu 0 311 1 2076 159 14 44 chr6 11664507 11664664 -170750578 + MLT1A1 LTR MaLR 1 161 -204 1961 157 3 6 chr6 11664664 11664976 -170750266 + AluJb SINE Alu 1 311 -1 2076 159 14 44 chr6 11664976 11665182 -170750060 + MLT1A1 LTR MaLR 161 353 -12 249 83 0 0 chr6 11665189 11665225 -170750017 + (TA)n Simple_repeat Simple_repeat 2 37 0 2131 120 0 10 chr6 11665404 11665704 -170749538 - AluSx SINE Alu -15 297 1 216 268 0 18 chr6 11665713 11665769 -170749473 - MER5B DNA MER1_type -120 58 4 1550 147 13 0 chr6 11665769 11665994 -170749248 + AluJb SINE Alu 6 233 -79 2145 117 24 0 chr6 11666164 11666455 -170748787 - AluSx SINE Alu -14 298 1 495 220 15 23 chr6 11666495 11666627 -170748615 - MER5B DNA MER1_type -47 131 1 773 276 131 8 chr6 11666645 11667003 -170748239 + L2 LINE L2 2910 3311 -2 2382 91 10 0 chr6 11667051 11667360 -170747882 - AluSx SINE Alu 0 312 1 24 103 0 0 chr6 11668885 11668972 -170746270 + GC_rich Low_complexity Low_complexity 1 87 0 201 288 0 30 chr6 11670029 11670082 -170745160 + (TATG)n Simple_repeat Simple_repeat 4 56 -11 2168 104 0 36 chr6 11670082 11670391 -170744851 - AluSq SINE Alu -15 298 1 201 288 0 30 chr6 11670391 11670403 -170744839 + (TATG)n Simple_repeat Simple_repeat 56 67 0 1619 138 28 16 chr6 11670868 11671122 -170744120 - MER1B DNA MER1_type 0 339 83 431 96 27 41 chr6 11671349 11671422 -170743820 - MLT1B LTR MaLR -2 388 317 2217 100 30 0 chr6 11671431 11671730 -170743512 - AluSp SINE Alu -5 308 1 1114 84 7 7 chr6 11671735 11671878 -170743364 - AluSp SINE Alu -170 143 1 1528 140 92 54 chr6 11671884 11672113 -170743129 - MLT1B LTR MaLR -63 327 81 2003 129 0 39 chr6 11672113 11672424 -170742818 + AluSq SINE Alu 1 299 -14 1528 140 92 54 chr6 11672424 11672509 -170742733 - MLT1B LTR MaLR -309 81 1 300 321 60 74 chr6 11672957 11673168 -170742074 + L2 LINE L2 1790 1997 -1317 2093 135 3 3 chr6 11673168 11673472 -170741770 - AluSq SINE Alu -9 304 1 300 321 60 74 chr6 11673472 11673559 -170741683 + L2 LINE L2 1997 2084 -1230 258 322 66 0 chr6 11673789 11673910 -170741332 + L2 LINE L2 2152 2280 -1034 2331 86 0 0 chr6 11673922 11674212 -170741030 - AluSc SINE Alu -19 290 1 662 207 53 24 chr6 11674212 11674372 -170740870 + L2 LINE L2 3146 3313 0 2329 106 0 0 chr6 11674788 11675099 -170740143 - AluY SINE Alu 0 311 1 1339 261 94 39 chr6 11675267 11675981 -170739261 - HAL1 LINE L1 -710 1797 1045 193 279 33 0 chr6 11676031 11676092 -170739150 + MIR SINE MIR 61 123 -139 2661 113 49 58 chr6 11676195 11676479 -170738763 - LTR26B LTR ERV1 -49 482 202 2199 104 7 3 chr6 11676479 11676777 -170738465 - AluSg SINE Alu -11 299 1 2661 113 49 58 chr6 11676777 11676978 -170738264 - LTR26B LTR ERV1 -329 202 1 844 210 51 5 chr6 11677204 11677492 -170737750 - MER93b LTR ERV1 0 373 40 * 3989 164 40 8 chr6 11677484 11678189 -170737053 - MER50 LTR ERV1 -7 727 1 8043 118 3 2 chr6 11678190 11679354 -170735888 - MER50-int LTR ERV1 -8 7197 3880 259 308 135 19 chr6 11680227 11680383 -170734859 - MER50-int LTR ERV1 -1926 6331 6158 1148 302 84 68 chr6 11680544 11682064 -170733178 - MER50-int LTR ERV1 -885 6206 4526 9858 190 31 58 chr6 11682075 11686440 -170728802 - MER50-int LTR ERV1 -3173 3918 15 3214 123 21 12 chr6 11686446 11686957 -170728285 - MER50 LTR ERV1 -218 516 1 2114 126 7 3 chr6 11686998 11687292 -170727950 - AluSx SINE Alu -17 295 1 1672 188 143 70 chr6 11687296 11687545 -170727697 - L1ME1 LINE L1 -203 5963 5734 2124 90 0 74 chr6 11687545 11687857 -170727385 - AluSx SINE Alu -10 302 14 1672 188 143 70 chr6 11687857 11688314 -170726928 - L1ME1 LINE L1 -432 5734 5190 2165 129 0 3 chr6 11688314 11688616 -170726626 - AluSx SINE Alu -11 301 1 1672 188 143 70 chr6 11688616 11688685 -170726557 - L1ME1 LINE L1 -976 5190 5127 2215 96 0 7 chr6 11688707 11688999 -170726243 - AluSx SINE Alu -2 310 21 1418 234 79 62 chr6 11689002 11689326 -170725916 - L1ME1 LINE L1 -1940 4206 3866 2312 118 0 3 chr6 11689326 11689639 -170725603 - AluSx SINE Alu 0 312 1 1418 234 79 62 chr6 11689639 11689922 -170725320 - L1ME1 LINE L1 -2280 3866 3589 1773 200 209 3 chr6 11689934 11690404 -170724838 - MLT1E1 LTR MaLR 0 654 103 2360 102 0 6 chr6 11690411 11690726 -170724516 - AluSp SINE Alu 0 313 1 2166 126 7 3 chr6 11690748 11691058 -170724184 - AluSx SINE Alu -1 311 1 462 235 84 0 chr6 11691060 11691179 -170724063 - MLT1E1 LTR MaLR -464 129 1 1399 247 88 15 chr6 11691186 11691709 -170723533 - L1ME1 LINE L1 -2573 3573 3013 1352 84 0 0 chr6 11691719 11691897 -170723345 - AluSc SINE Alu 0 309 132 2379 54 9 47 chr6 11691897 11692214 -170723028 - AluYa5 SINE Alu -6 305 1 693 204 43 48 chr6 11692256 11692486 -170722756 - L1ME1 LINE L1 -3200 2946 2718 1968 125 48 0 chr6 11692486 11692775 -170722467 - AluSx SINE Alu -9 303 1 979 110 0 0 chr6 11692775 11692902 -170722340 - AluSq/x SINE Alu -178 135 9 327 271 76 0 chr6 11692903 11693021 -170722221 - L1ME1 LINE L1 -3406 2740 2614 189 345 36 64 chr6 11693196 11693306 -170721936 - L2 LINE L2 -24 3289 3183 621 238 92 5 chr6 11693512 11693697 -170721545 - MIR SINE MIR -6 256 56 197 83 28 0 chr6 11693984 11694020 -170721222 + (TC)n Simple_repeat Simple_repeat 1 37 0 191 255 16 136 chr6 11694029 11694112 -170721130 - L2 LINE L2 -1006 2308 2257 2396 68 0 0 chr6 11694112 11694408 -170720834 + AluY SINE Alu 1 296 -15 191 255 16 136 chr6 11694408 11694508 -170720734 - L2 LINE L2 -1057 2257 2147 2486 131 3 29 chr6 11694981 11695356 -170719886 - MLT1A1 LTR MaLR 0 365 1 200 286 82 20 chr6 11695457 11695555 -170719687 + MIR SINE MIR 64 167 -95 355 216 72 79 chr6 11696865 11697004 -170718238 - MER5B DNA MER1_type -17 161 24 804 159 8 0 chr6 11697666 11697792 -170717450 + FLAM_C SINE Alu 1 127 -16 1122 122 37 0 chr6 11698413 11698602 -170716640 - L1MA5 LINE L1 -2 6298 6103 5895 112 27 26 chr6 11698607 11699535 -170715707 - L1MA3 LINE L1 0 6305 5377 * 17975 148 30 32 chr6 11699525 11699735 -170715507 - L1M1 LINE L1 -4510 3055 2846 2277 88 0 53 chr6 11699735 11700053 -170715189 + AluSx SINE Alu 1 301 -11 2242 101 0 24 chr6 11700053 11700351 -170714891 + AluSx SINE Alu 1 291 -21 207 0 0 0 chr6 11700356 11700379 -170714863 + (CAA)n Simple_repeat Simple_repeat 2 24 0 17975 148 30 32 chr6 11700379 11700780 -170714462 - L1M1 LINE L1 -4722 2843 2443 2344 101 0 0 chr6 11700780 11701087 -170714155 - AluSg SINE Alu -3 307 1 17975 148 30 32 chr6 11701087 11702194 -170713048 - L1M1 LINE L1 -5122 2443 1336 2161 120 45 58 chr6 11702194 11702553 -170712689 - THE1A LTR MaLR 0 355 2 17975 148 30 32 chr6 11702553 11702568 -170712674 - L1M1 LINE L1 -6229 1336 1322 303 29 0 0 chr6 11702568 11702603 -170712639 - THE1A LTR MaLR -320 35 1 17975 148 30 32 chr6 11702603 11703873 -170711369 - L1M1 LINE L1 -6243 1322 13 2948 134 15 11 chr6 11703867 11704343 -170710899 - L1MA4 LINE L1 -239 6061 5584 * 842 158 51 6 chr6 11704346 11704523 -170710719 - L1MA4 LINE L1 -1267 4879 4695 189 0 0 0 chr6 11705007 11705028 -170710214 + (CAA)n Simple_repeat Simple_repeat 2 22 0 235 254 0 0 chr6 11705035 11705090 -170710152 + LTR67 LTR ERVL 13 67 -490 21 0 0 0 chr6 11706058 11706079 -170709163 + AT_rich Low_complexity Low_complexity 1 21 0 4824 177 27 21 chr6 11706088 11707681 -170707561 + L1MB7 LINE L1 4562 6165 -19 216 237 62 82 chr6 11707730 11707827 -170707415 - MIR SINE MIR -4 258 164 224 367 76 0 chr6 11708917 11708996 -170706246 + L2 LINE L2 3150 3234 -38 21 82 0 0 chr6 11709014 11709063 -170706179 + AT_rich Low_complexity Low_complexity 1 49 0 3844 157 45 5 chr6 11709641 11710289 -170704953 + HsTC2 DNA Tc2 1 674 -1224 1622 175 93 8 chr6 11710287 11710653 -170704589 + HsTC2 DNA Tc2 1328 1900 0 * 207 291 191 33 chr6 11713946 11714156 -170701086 - L2 LINE L2 -2129 1185 943 316 302 137 88 chr6 11714672 11715469 -170699773 - L2 LINE L2 -338 2976 2141 1504 141 120 86 chr6 11715475 11715641 -170699601 + MSTD LTR MaLR 1 160 -236 1967 74 0 0 chr6 11715641 11715883 -170699359 - AluSx SINE Alu -15 297 56 1504 141 120 86 chr6 11715883 11716098 -170699144 + MSTD LTR MaLR 160 395 -1 1912 166 67 52 chr6 11716103 11716474 -170698768 + MSTB1 LTR MaLR 5 384 -48 2487 81 0 0 chr6 11716474 11716783 -170698459 + AluSc SINE Alu 1 309 0 1912 166 67 52 chr6 11716783 11716832 -170698410 + MSTB1 LTR MaLR 384 431 -1 314 350 94 0 chr6 11717071 11717231 -170698011 - L2 LINE L2 -685 2629 2455 295 228 166 0 chr6 11717334 11717449 -170697793 + MIR SINE MIR 38 173 -63 459 141 0 0 chr6 11717550 11717628 -170697614 + (TTC)n Simple_repeat Simple_repeat 2 79 0 2198 121 10 0 chr6 11717633 11717940 -170697302 - AluSx SINE Alu -2 310 1 287 375 180 0 chr6 11717991 11718191 -170697051 + L2 LINE L2 2332 2567 -747 638 179 32 8 chr6 11718262 11718385 -170696857 + MIR SINE MIR 107 232 -30 374 236 16 55 chr6 11719451 11719578 -170695664 + MER94 DNA DNA 1 122 -12 2319 97 3 7 chr6 11719835 11720143 -170695099 - AluSx SINE Alu -5 307 1 424 218 23 68 chr6 11721393 11721526 -170693716 + MER5A DNA MER1_type 33 159 -30 1189 182 129 53 chr6 11721551 11721840 -170693402 + MLT1B LTR MaLR 6 328 -62 2426 82 0 7 chr6 11721840 11722144 -170693098 - AluSp SINE Alu -11 302 1 1189 182 129 53 chr6 11722144 11722211 -170693031 + MLT1B LTR MaLR 328 389 -1 1586 107 61 61 chr6 11722437 11722698 -170692544 + AluSg SINE Alu 44 304 -6 413 280 103 71 chr6 11722711 11723053 -170692189 + LTR67 LTR ERVL 114 474 -83 1644 155 54 4 chr6 11723053 11723330 -170691912 - AluJb SINE Alu -21 291 1 413 280 103 71 chr6 11723330 11723412 -170691830 + LTR67 LTR ERVL 474 552 -5 484 128 26 26 chr6 11723424 11723541 -170691701 + CT-rich Low_complexity Low_complexity 1 117 0 1958 101 9 75 chr6 11723801 11724119 -170691123 - AluSq SINE Alu -15 298 2 254 242 32 38 chr6 11724223 11724350 -170690892 - L1 LINE L1 -1089 5057 4933 439 317 91 55 chr6 11724375 11724813 -170690429 - L1MEd LINE L1 -5654 465 12 2134 104 16 0 chr6 11725035 11725342 -170689900 - AluSx SINE Alu 0 312 1 220 211 0 0 chr6 11725594 11725646 -170689596 + T-rich Low_complexity Low_complexity 5 56 0 303 286 49 70 chr6 11726550 11726735 -170688507 + L1MC/D LINE L1 609 789 -5416 1256 297 89 40 chr6 11726749 11726769 -170688473 + L1MC/D LINE L1 4052 4070 -2145 216 0 0 0 chr6 11726769 11726793 -170688449 + (TG)n Simple_repeat Simple_repeat 1 24 0 1256 297 89 40 chr6 11726793 11727965 -170687277 + L1MC/D LINE L1 4070 5302 -913 1206 279 94 29 chr6 11727982 11728494 -170686748 + L1MC/D LINE L1 5324 5868 -2009 807 84 0 0 chr6 11729058 11729165 -170686077 - AluSg/x SINE Alu -13 297 191 2132 93 0 93 chr6 11730024 11730358 -170684884 + AluSq SINE Alu 1 303 -10 1287 284 38 42 chr6 11730441 11731160 -170684082 + L1MEd LINE L1 1010 1725 -4671 252 294 0 0 chr6 11731162 11731230 -170684012 + L1ME1 LINE L1 6046 6113 -53 265 340 0 0 chr6 11731254 11731360 -170683882 + L1MEd LINE L1 1711 1816 -4580 290 246 130 62 chr6 11731497 11731850 -170683392 + L1MEd LINE L1 1877 2253 -4143 259 241 23 46 chr6 11732000 11732087 -170683155 + L1MEd LINE L1 3871 3955 -2260 * 1464 261 48 46 chr6 11732070 11732594 -170682648 + L1MB8 LINE L1 3672 4196 -2019 950 285 106 65 chr6 11732602 11733565 -170681677 + L1MC4 LINE L1 5973 6927 -881 * 4891 180 73 22 chr6 11733557 11735349 -170679893 + L1MB8 LINE L1 4136 6018 -229 233 229 31 52 chr6 11735408 11735504 -170679738 + T-rich Low_complexity Low_complexity 2 95 0 287 329 83 24 chr6 11736934 11737186 -170678056 - L2 LINE L2 -636 2678 2412 1887 162 87 0 chr6 11737509 11737854 -170677388 + L1MB2 LINE L1 5746 6120 -51 24 0 0 29 chr6 11737863 11737885 -170677357 + AT_rich Low_complexity Low_complexity 1 23 -11 2158 110 3 3 chr6 11737885 11738176 -170677066 + AluSq SINE Alu 1 291 -22 24 0 0 29 chr6 11738176 11738188 -170677054 + AT_rich Low_complexity Low_complexity 23 34 0 728 139 9 0 chr6 11738230 11738338 -170676904 + FRAM SINE Alu 31 139 -37 2231 103 0 17 chr6 11738359 11738694 -170676548 + AluSx SINE Alu 1 312 0 358 322 28 7 chr6 11739287 11739430 -170675812 - L2 LINE L2 -4 3309 3164 2356 101 0 0 chr6 11740399 11740697 -170674545 + AluSx SINE Alu 1 298 -14 2303 113 0 0 chr6 11740970 11741270 -170673972 + AluSx SINE Alu 1 300 -12 466 271 106 37 chr6 11742566 11742784 -170672458 - MIR SINE MIR -10 252 20 1126 257 139 47 chr6 11742821 11743517 -170671725 - L1MC4 LINE L1 0 8042 7283 2362 104 0 19 chr6 11744232 11744541 -170670701 + AluSx SINE Alu 1 303 -9 1624 88 66 0 chr6 11745406 11745632 -170669610 + AluSq SINE Alu 1 241 -72 4071 128 69 40 chr6 11745632 11746995 -170668247 + pTR5 LTR ERV1 743 2438 0 287 183 0 17 chr6 11746998 11747058 -170668184 + AluSq SINE Alu 236 294 -6 2288 94 17 0 chr6 11748558 11748971 -170666271 - AluSg SINE Alu 0 418 1 730 306 86 40 chr6 11749231 11749565 -170665677 + L2 LINE L2 2400 2717 -596 1454 188 16 46 chr6 11749565 11749868 -170665374 + AluJo SINE Alu 1 294 -18 2060 98 4 0 chr6 11749871 11750137 -170665105 + AluSg SINE Alu 1 267 -43 306 0 0 0 chr6 11750147 11750181 -170665061 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 730 306 86 40 chr6 11750181 11750700 -170664542 + L2 LINE L2 2726 3313 0 188 258 16 16 chr6 11750940 11751002 -170664240 - L2 LINE L2 -463 2851 2790 2383 92 0 10 chr6 11751266 11751580 -170663662 - AluSx SINE Alu -1 311 1 338 277 103 33 chr6 11752045 11752229 -170663013 + MIR SINE MIR 63 259 -3 268 236 90 83 chr6 11752938 11753010 -170662232 + MER103 DNA DNA 3 73 -93 2491 96 0 0 chr6 11753010 11753322 -170661920 - AluSx SINE Alu 0 312 1 268 236 90 83 chr6 11753322 11753393 -170661849 + MER103 DNA DNA 73 147 -19 240 232 0 43 chr6 11753567 11753636 -170661606 + CT-rich Low_complexity Low_complexity 3 68 0 1505 203 122 3 chr6 11753941 11754295 -170660947 + MSTD LTR MaLR 1 396 0 2183 228 65 37 chr6 11755017 11755132 -170660110 - L1ME1 LINE L1 -5 6161 6051 777 252 39 24 chr6 11755132 11755338 -170659904 - MER3 DNA MER1_type 0 209 1 2183 228 65 37 chr6 11755338 11755849 -170659393 - L1ME1 LINE L1 -115 6051 5517 1438 243 49 19 chr6 11755877 11756309 -170658933 - L1ME1 LINE L1 -3556 2590 2146 2645 222 30 27 chr6 11756311 11757010 -170658232 - L1ME1 LINE L1 -18 6148 5448 1255 207 81 25 chr6 11757116 11757522 -170657720 - L1ME1 LINE L1 -885 5261 4833 23 54 0 0 chr6 11759771 11759808 -170655434 + AT_rich Low_complexity Low_complexity 1 37 0 216 280 173 40 chr6 11760475 11760625 -170654617 + MIR3 SINE MIR 30 199 -9 210 314 23 0 chr6 11760699 11760785 -170654457 + MIR SINE MIR 175 262 0 2529 61 3 0 chr6 11761361 11761655 -170653587 - AluY SINE Alu -16 295 1 292 228 216 9 chr6 11761869 11761977 -170653265 - MIR SINE MIR -58 150 40 201 132 0 0 chr6 11761988 11762026 -170653216 + (CATTT)n Simple_repeat Simple_repeat 1 38 0 252 172 0 0 chr6 11762254 11762312 -170652930 + GA-rich Low_complexity Low_complexity 1 58 0 2391 98 0 0 chr6 11763687 11763984 -170651258 - AluSg SINE Alu -13 297 1 391 236 62 81 chr6 11764404 11764565 -170650677 - MIR3 SINE MIR -48 160 3 193 338 14 0 chr6 11766298 11766369 -170648873 + MIR SINE MIR 76 147 -115 1855 148 20 10 chr6 11766468 11766771 -170648471 + AluJb SINE Alu 1 306 -6 2547 78 0 3 chr6 11767392 11767699 -170647543 + AluSc SINE Alu 1 306 -3 1979 146 6 25 chr6 11767762 11768077 -170647165 + AluSx SINE Alu 1 309 -3 2163 119 17 3 chr6 11768600 11768895 -170646347 - AluSq SINE Alu -14 299 1 2264 95 3 0 chr6 11770453 11770762 -170644480 + AluSq SINE Alu 2 311 0 2374 97 0 0 chr6 11770762 11771073 -170644169 + AluY SINE Alu 1 311 0 603 203 115 14 chr6 11772862 11773010 -170642232 - Charlie8 DNA MER1_type -2246 171 9 182 367 50 0 chr6 11773141 11773261 -170641981 + L2 LINE L2 2925 3050 -222 185 232 89 0 chr6 11773420 11773476 -170641766 + L2 LINE L2 3247 3307 -6 423 268 178 5 chr6 11774026 11774239 -170641003 + MIR SINE MIR 13 262 0 2570 56 0 40 chr6 11774388 11774712 -170640530 - AluY SINE Alu 0 311 1 275 217 96 48 chr6 11775075 11775158 -170640084 + L1MEd LINE L1 583 669 -5450 27 29 0 0 chr6 11776425 11776459 -170638783 + AT_rich Low_complexity Low_complexity 1 34 0 200 289 79 0 chr6 11778797 11778873 -170636369 - MIR3 SINE MIR -8 200 119 2361 113 0 0 chr6 11779179 11779489 -170635753 + AluSg SINE Alu 1 310 0 248 277 23 59 chr6 11779852 11780011 -170635231 + MIR SINE MIR 34 136 -72 2043 148 0 3 chr6 11780369 11780667 -170634575 - AluSq SINE Alu -16 297 1 2444 91 0 0 chr6 11780876 11781174 -170634068 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr6 11781203 11781225 -170634017 + AT_rich Low_complexity Low_complexity 1 22 0 255 152 0 0 chr6 11782077 11782123 -170633119 + (TG)n Simple_repeat Simple_repeat 2 47 0 254 356 35 0 chr6 11782492 11782607 -170632635 - L2 LINE L2 -221 3051 2933 2062 137 0 0 chr6 11782635 11782934 -170632308 + AluSx SINE Alu 1 299 -13 259 258 0 15 chr6 11783984 11784050 -170631192 + ORSL DNA AcHobo 211 275 0 551 256 87 19 chr6 11784315 11784527 -170630715 - MIR SINE MIR -18 244 17 422 292 16 52 chr6 11784870 11785062 -170630180 + MER5A DNA MER1_type 1 185 -4 356 160 27 0 chr6 11785457 11785532 -170629710 + GA-rich Low_complexity Low_complexity 4 80 0 236 293 207 12 chr6 11787111 11787275 -170627967 + L2 LINE L2 3118 3313 0 288 241 116 18 chr6 11791116 11791228 -170624014 - MIR3 SINE MIR -32 176 54 184 255 20 0 chr6 11791395 11791446 -170623796 + MIR SINE MIR 78 129 -79 480 292 37 6 chr6 11792309 11792470 -170622772 - MIR3 SINE MIR -12 196 31 193 342 79 26 chr6 11793270 11793384 -170621858 + L2 LINE L2 3153 3272 0 2290 112 3 3 chr6 11795840 11796152 -170619090 + AluSx SINE Alu 1 312 0 218 189 151 0 chr6 11796233 11796286 -170618956 - MIR3 SINE MIR -14 194 134 959 141 17 108 chr6 11797673 11797914 -170617328 + MER20 DNA MER1_type 1 219 0 258 32 0 0 chr6 11800223 11800254 -170614988 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2425 56 7 0 chr6 11800256 11800540 -170614702 - AluY SINE Alu -25 286 1 22 0 0 0 chr6 11800540 11800562 -170614680 + AT_rich Low_complexity Low_complexity 1 22 0 287 290 183 21 chr6 11801527 11801713 -170613529 - MIR SINE MIR -1 261 46 450 236 92 35 chr6 11802066 11802240 -170613002 - MIR SINE MIR -6 256 73 2249 113 3 0 chr6 11802988 11803289 -170611953 + AluSx SINE Alu 1 302 -10 228 86 0 0 chr6 11803522 11803557 -170611685 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 720 229 78 0 chr6 11805039 11805205 -170610037 + MIR SINE MIR 11 189 -73 209 267 0 0 chr6 11807881 11807926 -170607316 + CT-rich Low_complexity Low_complexity 6 50 0 2235 105 16 10 chr6 11809445 11809751 -170605491 - AluSq SINE Alu -5 308 1 234 269 92 8 chr6 11809782 11809901 -170605341 + MIR SINE MIR 134 262 0 274 224 22 30 chr6 11809901 11810035 -170605207 + (TTA)n Simple_repeat Simple_repeat 1 133 0 1373 269 60 21 chr6 11810141 11810672 -170604570 - L2 LINE L2 -26 3287 2718 237 280 48 65 chr6 11811260 11811428 -170603814 - MIR3 SINE MIR -15 193 29 975 212 102 29 chr6 11812248 11812522 -170602720 + MER58B DNA MER1_type 45 338 -3 378 304 48 44 chr6 11812871 11813098 -170602144 - MIR SINE MIR -33 229 2 1943 151 0 22 chr6 11813617 11813929 -170601313 + AluJo SINE Alu 1 305 -7 2409 95 0 0 chr6 11814503 11814807 -170600435 + AluSc SINE Alu 1 304 -5 796 295 28 8 chr6 11817501 11817755 -170597487 - MER46C DNA MER2_type 0 338 80 458 264 171 10 chr6 11818024 11818070 -170597172 - MER5C DNA MER1_type -100 224 187 225 65 0 0 chr6 11818070 11818101 -170597141 + (ATG)n Simple_repeat Simple_repeat 2 32 0 458 264 171 10 chr6 11818101 11818247 -170596995 - MER5C DNA MER1_type -137 187 1 2020 119 13 16 chr6 11818635 11818953 -170596289 + MLT2D LTR ERVL 1 317 -97 216 216 0 0 chr6 11819000 11819051 -170596191 + (CA)n Simple_repeat Simple_repeat 2 52 0 621 331 57 38 chr6 11819309 11819729 -170595513 + MLT1K LTR MaLR 157 584 -4 206 275 58 58 chr6 11819730 11819850 -170595392 + L2 LINE L2 3185 3304 -9 1039 163 9 14 chr6 11822173 11822388 -170592854 - L1MB7 LINE L1 -16 6168 5955 186 133 0 0 chr6 11822960 11822990 -170592252 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1059 201 5 0 chr6 11823773 11823967 -170591275 + MLT2D LTR ERVL 3 197 -217 1299 230 193 26 chr6 11823984 11824414 -170590828 - MLT1J LTR MaLR -9 502 1 23 0 0 0 chr6 11827578 11827601 -170587641 + AT_rich Low_complexity Low_complexity 1 23 0 710 133 11 116 chr6 11828726 11828857 -170586385 - MER53 DNA DNA -7 182 74 2152 123 27 0 chr6 11828857 11829150 -170586092 - AluSg SINE Alu -9 301 1 710 133 11 116 chr6 11829150 11829199 -170586043 - MER53 DNA DNA -115 74 21 786 120 8 0 chr6 11829225 11829342 -170585900 - L1PB1 LINE L1 -3 6148 6031 383 338 35 65 chr6 11830261 11830658 -170584584 - L2 LINE L2 -337 2977 2593 1692 127 113 11 chr6 11831228 11831503 -170583739 - AluJb SINE Alu -9 303 1 1229 199 0 0 chr6 11831891 11832102 -170583140 - MER20 DNA MER1_type 0 219 9 324 0 0 0 chr6 11832515 11832551 -170582691 + (TG)n Simple_repeat Simple_repeat 1 36 0 273 29 0 0 chr6 11834675 11834709 -170580533 + (CA)n Simple_repeat Simple_repeat 2 35 0 501 296 50 10 chr6 11835059 11835258 -170579984 + MIR SINE MIR 2 208 -54 306 169 0 0 chr6 11835596 11835661 -170579581 + (TG)n Simple_repeat Simple_repeat 2 66 0 214 290 86 74 chr6 11835958 11836120 -170579122 - MIR SINE MIR -50 212 49 430 307 16 0 chr6 11838668 11838795 -170576447 + MIR SINE MIR 41 169 -93 1625 224 88 100 chr6 11839128 11839605 -170575637 + HAL1b LINE L1 443 905 -443 829 158 0 8 chr6 11839605 11839738 -170575504 - FLAM_C SINE Alu -1 132 1 1625 224 88 100 chr6 11839738 11840147 -170575095 + HAL1b LINE L1 905 1318 -30 2535 173 10 10 chr6 11840456 11840935 -170574307 + L1PB4 LINE L1 5677 6155 -1 885 149 28 145 chr6 11840952 11841200 -170574042 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr6 11841337 11841359 -170573883 + AT_rich Low_complexity Low_complexity 1 22 0 1782 149 10 14 chr6 11842774 11843070 -170572172 - AluJb SINE Alu -17 295 1 2330 79 0 0 chr6 11843185 11843465 -170571777 + AluSq SINE Alu 1 280 -33 381 22 0 0 chr6 11843465 11843511 -170571731 + (CA)n Simple_repeat Simple_repeat 1 46 0 261 0 0 0 chr6 11844551 11844580 -170570662 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2019 127 13 7 chr6 11844585 11844884 -170570358 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 11845107 11845129 -170570113 + AT_rich Low_complexity Low_complexity 1 22 0 234 278 106 40 chr6 11845518 11845669 -170569573 - L2 LINE L2 -143 3129 2969 1590 176 17 27 chr6 11845775 11846076 -170569166 - AluJo SINE Alu -14 298 1 4214 150 24 65 chr6 11849384 11850276 -170564966 + L1MA8 LINE L1 5431 6285 -6 228 182 0 0 chr6 11850276 11850320 -170564922 + (CATA)n Simple_repeat Simple_repeat 3 46 0 381 216 0 0 chr6 11851071 11851159 -170564083 + (TG)n Simple_repeat Simple_repeat 1 88 0 211 209 0 0 chr6 11851182 11851225 -170564017 + L2 LINE L2 3179 3221 -92 252 0 0 0 chr6 11851682 11851710 -170563532 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 330 344 53 21 chr6 11852632 11852821 -170562421 + LTR33 LTR ERVL 23 217 -304 338 303 298 0 chr6 11853039 11853217 -170562025 - MIR SINE MIR -19 243 13 333 233 126 0 chr6 11853415 11853518 -170561724 + MER5B DNA MER1_type 1 116 -62 966 209 24 0 chr6 11854739 11854950 -170560292 - MER20 DNA MER1_type 0 219 4 401 283 178 12 chr6 11855232 11855479 -170559763 + LTR33 LTR ERVL 5 292 -229 852 271 142 57 chr6 11855895 11856260 -170558982 + MLT1L LTR MaLR 1 334 -281 922 128 0 0 chr6 11856260 11856393 -170558849 - FLAM_C SINE Alu 0 133 1 852 271 142 57 chr6 11856393 11856477 -170558765 + MLT1L LTR MaLR 334 409 -206 1755 153 50 17 chr6 11856477 11856778 -170558464 - AluSx SINE Alu -1 311 1 852 271 142 57 chr6 11856778 11856870 -170558372 + MLT1L LTR MaLR 409 589 -26 1482 308 136 12 chr6 11856976 11858135 -170557107 + L2 LINE L2 1978 3282 -31 201 39 0 0 chr6 11858153 11858179 -170557063 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 211 235 0 44 chr6 11858276 11858344 -170556898 + L2 LINE L2 2152 2216 -1098 2280 80 0 52 chr6 11859007 11859333 -170555909 + AluY SINE Alu 1 309 -2 38 0 0 0 chr6 11859516 11859554 -170555688 + AT_rich Low_complexity Low_complexity 1 38 0 655 272 58 5 chr6 11859577 11859801 -170555441 - MIR SINE MIR -4 258 23 3765 211 43 35 chr6 11860038 11861698 -170553544 + L1ME1 LINE L1 4448 6121 -45 339 164 15 0 chr6 11861809 11861876 -170553366 + L1MA10 LINE L1 6266 6333 -1 1916 145 0 3 chr6 11861884 11862186 -170553056 + AluSx SINE Alu 1 301 0 234 0 0 0 chr6 11862264 11862290 -170552952 + (CA)n Simple_repeat Simple_repeat 1 26 0 2209 92 4 0 chr6 11864180 11864490 -170550752 - AluY SINE Alu 0 311 1 335 321 9 0 chr6 11865606 11865712 -170549530 + MLT1J1 LTR MaLR 66 172 -274 2658 49 0 0 chr6 11866007 11866313 -170548929 - AluY SINE Alu -5 306 1 439 269 39 51 chr6 11867645 11867801 -170547441 + MER5A DNA MER1_type 35 188 -1 431 310 105 35 chr6 11867873 11868102 -170547140 - MIR SINE MIR -6 256 12 5658 149 29 30 chr6 11868215 11868739 -170546503 - L1MA9 LINE L1 -6 6306 5783 309 89 0 0 chr6 11868739 11868784 -170546458 + (TG)n Simple_repeat Simple_repeat 2 46 0 5658 149 29 30 chr6 11868784 11869018 -170546224 - L1MA9 LINE L1 -529 5783 5550 2315 133 117 5 chr6 11869018 11869403 -170545839 + MSTA LTR MaLR 1 428 0 5658 149 29 30 chr6 11869403 11869544 -170545698 - L1MA9 LINE L1 -762 5550 5410 2734 101 0 3 chr6 11869544 11869909 -170545333 + THE1B LTR MaLR 1 364 0 5658 149 29 30 chr6 11869909 11870113 -170545129 - L1MA9 LINE L1 -902 5410 5203 790 272 81 0 chr6 11870314 11870586 -170544656 + LTR16A LTR ERVL 152 445 -5 2372 121 32 8 chr6 11870639 11871012 -170544230 + MLT1B LTR MaLR 1 382 -8 683 35 0 61 chr6 11871346 11871461 -170543781 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 2224 130 0 0 chr6 11871461 11871768 -170543474 - AluSx SINE Alu -5 307 1 212 171 0 0 chr6 11871863 11871904 -170543338 + T-rich Low_complexity Low_complexity 1 41 0 830 213 60 47 chr6 11872430 11872636 -170542606 - MIR SINE MIR -18 244 33 2165 142 0 0 chr6 11872636 11872947 -170542295 - AluSx SINE Alu -1 311 1 830 213 60 47 chr6 11872947 11872975 -170542267 - MIR SINE MIR -229 33 7 198 118 0 0 chr6 11873021 11873055 -170542187 + (TG)n Simple_repeat Simple_repeat 1 34 0 7400 91 17 10 chr6 11873611 11879703 -170535539 + L1PA6 LINE L1 11 6149 -5 262 350 105 8 chr6 11879973 11880135 -170535107 - MIR SINE MIR -55 207 32 265 307 114 9 chr6 11882452 11882566 -170532676 - L1ME2 LINE L1 -48 6116 5991 1602 300 96 21 chr6 11882581 11883101 -170532141 + MER115 DNA AcHobo 3 579 -114 2684 49 0 0 chr6 11883101 11883408 -170531834 - AluY SINE Alu -4 307 1 1602 300 96 21 chr6 11883408 11883514 -170531728 + MER115 DNA AcHobo 579 676 -17 939 264 24 10 chr6 11883841 11884129 -170531113 - L1ME2 LINE L1 -202 5968 5677 402 203 136 0 chr6 11884193 11884307 -170530935 - FLAM_A SINE Alu -26 107 3 370 270 112 4 chr6 11884308 11884447 -170530795 - L1ME2 LINE L1 -577 5585 5434 442 350 28 9 chr6 11885027 11885350 -170529892 + L2 LINE L2 980 1308 -2006 220 374 14 43 chr6 11885498 11885776 -170529466 + L2 LINE L2 1332 1601 -1713 1307 183 109 29 chr6 11885900 11886250 -170528992 + MLT1B LTR MaLR 7 384 -6 358 325 12 25 chr6 11886261 11886421 -170528821 + MIR SINE MIR 70 227 -35 364 106 0 0 chr6 11886421 11886465 -170528777 - MLT1B LTR MaLR 0 390 347 331 93 0 0 chr6 11886465 11886508 -170528734 + Alu SINE Alu 1 43 -259 247 368 110 16 chr6 11887165 11887347 -170527895 + L2 LINE L2 2550 2748 -566 414 198 267 32 chr6 11887355 11887418 -170527824 + L1MC5 LINE L1 7629 7676 -285 217 0 61 0 chr6 11887418 11887451 -170527791 + (TA)n Simple_repeat Simple_repeat 2 36 0 414 198 267 32 chr6 11887451 11887604 -170527638 + L1MC5 LINE L1 7676 7896 -65 225 350 10 20 chr6 11887660 11887760 -170527482 + L2 LINE L2 2736 2834 -480 765 171 17 0 chr6 11887836 11888011 -170527231 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 905 164 6 9 chr6 11888023 11888365 -170526877 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 295 331 93 0 chr6 11888365 11888516 -170526726 + MIR3 SINE MIR 7 171 -37 21 82 0 0 chr6 11888561 11888610 -170526632 + AT_rich Low_complexity Low_complexity 1 49 0 187 289 0 0 chr6 11888617 11888669 -170526573 + L3 LINE CR1 1524 1575 -2 22 0 0 0 chr6 11888738 11888760 -170526482 + AT_rich Low_complexity Low_complexity 1 22 0 234 200 18 55 chr6 11889000 11889055 -170526187 + L2 LINE L2 3214 3266 -6 289 295 164 16 chr6 11889484 11889606 -170525636 + MIR3 SINE MIR 16 155 -53 309 347 68 37 chr6 11891389 11891847 -170523395 - L2 LINE L2 -647 2667 2196 2046 103 59 7 chr6 11891890 11892180 -170523062 + AluSx SINE Alu 1 305 -7 302 282 149 11 chr6 11892290 11892464 -170522778 - L2 LINE L2 -1371 1943 1746 1755 229 31 74 chr6 11892515 11893057 -170522185 + MLT2B1 LTR ERVL 2 520 0 232 296 0 0 chr6 11893067 11893121 -170522121 + polypurine Low_complexity Low_complexity 1 54 0 482 233 2 15 chr6 11894067 11894523 -170520719 + (CA)n Simple_repeat Simple_repeat 1 450 0 183 229 0 0 chr6 11894571 11894632 -170520610 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr6 11894975 11894996 -170520246 + AT_rich Low_complexity Low_complexity 1 21 0 562 294 51 29 chr6 11895215 11895639 -170519603 + L1ME4a LINE L1 5575 6008 -113 692 190 10 0 chr6 11895786 11895984 -170519258 + GA-rich Low_complexity Low_complexity 1 200 0 3210 79 17 0 chr6 11896668 11897088 -170518154 + L1PA8 LINE L1 5745 6171 -1 283 303 38 30 chr6 11897480 11897612 -170517630 + MER5A DNA MER1_type 57 189 0 243 226 165 0 chr6 11897627 11897694 -170517548 + MIR SINE MIR 31 106 -102 958 217 33 19 chr6 11898200 11898412 -170516830 + MER20 DNA MER1_type 5 219 0 4556 179 58 48 chr6 11899196 11899813 -170515429 + MER45B DNA AcHobo 1 633 -948 2325 100 3 0 chr6 11899813 11900112 -170515130 + AluSx SINE Alu 1 300 -12 4556 179 58 48 chr6 11900112 11900497 -170514745 + MER45B DNA AcHobo 633 1013 -27 2250 115 0 6 chr6 11900602 11900914 -170514328 + AluSx SINE Alu 1 310 -2 356 320 0 0 chr6 11901745 11901848 -170513394 + MER94 DNA DNA 1 103 -31 215 270 108 0 chr6 11901900 11901974 -170513268 + MIR3 SINE MIR 96 177 -31 1063 158 0 50 chr6 11904442 11904644 -170510598 + MER20 DNA MER1_type 28 219 0 836 257 5 10 chr6 11904697 11904903 -170510339 + MER3 DNA MER1_type 3 207 -2 449 108 0 14 chr6 11907767 11907841 -170507401 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 257 203 70 112 chr6 11908924 11909111 -170506131 + L1ME4a LINE L1 5943 6121 0 9548 100 9 2 chr6 11909310 11910587 -170504655 + HSMAR1 DNA Mariner 1 1287 0 3302 143 22 13 chr6 11910974 11911525 -170503717 - Tigger3b DNA MER2_type -1 1230 675 2831 179 44 19 chr6 11911512 11911678 -170503564 - Tigger3b DNA MER2_type -2472 556 396 * 2232 113 3 0 chr6 11911678 11911979 -170503263 + AluSg SINE Alu 1 302 -8 2831 179 44 19 chr6 11911979 11912354 -170502888 - Tigger3b DNA MER2_type -2632 396 1 204 278 89 33 chr6 11912374 11912464 -170502778 + L2 LINE L2 3203 3297 -16 2596 150 37 22 chr6 11912764 11913223 -170502019 + MLT1C LTR MaLR 1 466 -1 2449 91 0 0 chr6 11913381 11913678 -170501564 + AluSc SINE Alu 1 297 -12 230 108 27 0 chr6 11913994 11914031 -170501211 - L1P4 LINE L1 -330 5833 5796 435 274 65 20 chr6 11915180 11915333 -170499909 - MIR SINE MIR -30 232 73 729 280 100 12 chr6 11915466 11915805 -170499437 + L2 LINE L2 2608 2976 -338 348 284 50 55 chr6 11915851 11916069 -170499173 + L1MEc LINE L1 204 420 -6143 761 197 28 0 chr6 11916320 11916462 -170498780 - MER3 DNA MER1_type -63 146 1 1711 283 73 41 chr6 11916464 11917510 -170497732 + L1MEc LINE L1 755 1833 -4551 867 262 110 14 chr6 11917479 11917842 -170497400 + L1ME2 LINE L1 5989 6386 -14 * 2236 108 0 3 chr6 11917887 11918182 -170497060 + AluSg SINE Alu 1 294 -16 591 236 187 9 chr6 11918184 11918409 -170496833 + L2 LINE L2 3030 3294 -19 234 105 0 0 chr6 11918413 11918451 -170496791 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 604 256 137 26 chr6 11920732 11920966 -170494276 + L2 LINE L2 3053 3312 -1 282 224 45 0 chr6 11921956 11922023 -170493219 + MIR SINE MIR 84 153 -109 10182 155 9 1 chr6 11922032 11924675 -170490567 + L1PA13 LINE L1 3501 6159 -4 247 288 81 9 chr6 11925322 11925433 -170489809 - L3 LINE CR1 -1 1576 1458 241 192 154 58 chr6 11925416 11925520 -170489722 - L2 LINE L2 -21 3251 3138 * 507 179 97 28 chr6 11925663 11925808 -170489434 - L1MA9 LINE L1 -9 6303 6149 836 262 73 66 chr6 11926168 11926646 -170488596 + MER39 LTR ERV1 67 707 0 356 309 78 11 chr6 11927293 11927484 -170487758 + MIR SINE MIR 2 205 -57 246 253 178 27 chr6 11927575 11927721 -170487521 + MIR SINE MIR 84 251 -11 1585 215 54 39 chr6 11927926 11928386 -170486856 + MLT1C LTR MaLR 1 467 0 675 303 131 25 chr6 11929345 11929665 -170485577 + MLT1K LTR MaLR 3 356 -232 231 154 0 0 chr6 11929768 11929807 -170485435 + MLT1K LTR MaLR 550 588 0 24 0 0 0 chr6 11930083 11930107 -170485135 + AT_rich Low_complexity Low_complexity 1 24 0 450 266 9 0 chr6 11930217 11930326 -170484916 - MER81 DNA DNA 0 114 5 2501 52 0 10 chr6 11930455 11930760 -170484482 - AluY SINE Alu -9 302 1 318 273 56 35 chr6 11930986 11931129 -170484113 - MER5B DNA MER1_type 0 178 33 580 168 104 0 chr6 11931249 11931374 -170483868 - MER5A DNA MER1_type -7 182 45 2422 53 16 10 chr6 11932709 11933013 -170482229 + AluSc SINE Alu 1 306 -3 2530 110 78 8 chr6 11935150 11935550 -170479692 + MSTA LTR MaLR 1 428 0 2008 126 126 48 chr6 11936000 11936397 -170478845 - MSTA LTR MaLR 0 428 1 1443 213 62 15 chr6 11936752 11937090 -170478152 + MLT1A1 LTR MaLR 1 354 -11 239 268 37 24 chr6 11938590 11938672 -170476570 - MIR SINE MIR -21 241 159 2904 161 72 0 chr6 11938675 11939191 -170476051 + MER68 LTR ERV1 4 556 -6 697 245 7 0 chr6 11939204 11939351 -170475891 - MIR SINE MIR -103 159 12 2035 119 7 10 chr6 11940447 11940741 -170474501 + AluSx SINE Alu 1 293 -19 1812 126 53 0 chr6 11940743 11941005 -170474237 + AluSg SINE Alu 1 276 -34 824 141 23 6 chr6 11941026 11941203 -170474039 + GA-rich Low_complexity Low_complexity 1 180 0 298 325 25 67 chr6 11941477 11941639 -170473603 + MIR SINE MIR 37 191 -61 679 221 62 112 chr6 11943606 11943864 -170471378 - MIR SINE MIR -5 257 13 259 278 56 16 chr6 11944504 11944630 -170470612 - L1MC/D LINE L1 -1954 5854 5724 307 307 140 28 chr6 11945444 11945838 -170469404 - L2 LINE L2 0 3313 2876 2729 177 13 0 chr6 11945840 11946308 -170468934 - L1MC1 LINE L1 -1 6332 5859 6642 92 11 19 chr6 11946591 11947547 -170467695 - L1MA2 LINE L1 -11 6293 5345 21 0 0 0 chr6 11947884 11947905 -170467337 + AT_rich Low_complexity Low_complexity 1 21 0 445 203 32 98 chr6 11948269 11948392 -170466850 + L2 LINE L2 3183 3297 -16 2212 166 26 45 chr6 11948431 11948784 -170466458 + MLT2D LTR ERVL 1 346 -68 207 0 0 0 chr6 11948784 11948807 -170466435 + (TC)n Simple_repeat Simple_repeat 2 24 0 2212 166 26 45 chr6 11948807 11948875 -170466367 + MLT2D LTR ERVL 346 414 0 1000 145 0 6 chr6 11999456 11999615 -170415627 - MSTA LTR MaLR -269 159 2 3089 261 36 24 chr6 11999615 12001816 -170413426 - L1MEc LINE L1 -2957 3258 991 982 286 23 9 chr6 12001862 12002205 -170413037 - L1MEc LINE L1 -6013 383 36 420 238 90 8 chr6 12002290 12002412 -170412830 + L1MEd LINE L1 988 1119 -5000 380 332 25 4 chr6 12002508 12002746 -170412496 - L1MEc LINE L1 -4722 1674 1432 515 255 21 35 chr6 12002882 12003015 -170412227 + MER45 DNA AcHobo 1 133 -820 305 91 0 0 chr6 12003015 12003059 -170412183 - L1MB2 LINE L1 -2 6169 6126 2085 168 25 27 chr6 12003060 12003466 -170411776 - MSTB1 LTR MaLR -12 420 16 1724 155 36 3 chr6 12003484 12003819 -170411423 - L1MB2 LINE L1 -51 6120 5775 286 234 16 0 chr6 12003841 12003905 -170411337 + MER45 DNA AcHobo 1517 1581 0 1861 178 18 0 chr6 12004656 12004994 -170410248 + MER2 DNA MER2_type 1 344 0 288 177 247 19 chr6 12005500 12005658 -170409584 + Charlie5 DNA MER1_type 2371 2564 -48 301 138 43 128 chr6 12005750 12005844 -170409398 + Charlie5 DNA MER1_type 2539 2624 0 1707 133 72 17 chr6 12006121 12006414 -170408828 - AluSq SINE Alu -4 309 1 36030 84 11 9 chr6 12006818 12012955 -170402287 + L1PA6 LINE L1 11 6149 -5 442 325 52 33 chr6 12014079 12014291 -170400951 + LTR16C LTR ERVL 66 281 -210 405 0 0 0 chr6 12014373 12014418 -170400824 + (ATG)n Simple_repeat Simple_repeat 2 46 0 814 186 124 10 chr6 12014434 12014627 -170400615 + LTR16C LTR ERVL 275 489 -2 644 184 9 25 chr6 12014634 12014955 -170400287 + (TCTA)n Simple_repeat Simple_repeat 1 315 0 609 291 23 17 chr6 12015524 12015699 -170399543 + MIR SINE MIR 36 211 -51 186 43 0 0 chr6 12015805 12015828 -170399414 + (CA)n Simple_repeat Simple_repeat 2 24 0 2353 77 7 3 chr6 12017128 12017426 -170397816 + AluY SINE Alu 1 299 -12 2883 137 17 2 chr6 12018046 12018521 -170396721 - L1MB2 LINE L1 -1 6170 5689 422 282 64 32 chr6 12018901 12019057 -170396185 - MIR SINE MIR -96 166 6 3941 28 7 0 chr6 12019170 12019632 -170395610 + L1PA3 LINE L1 5688 6152 -3 514 233 144 11 chr6 12019699 12019879 -170395363 + MIR SINE MIR 53 256 -6 2242 115 3 0 chr6 12019935 12020239 -170395003 + AluSc SINE Alu 1 305 -4 2264 89 0 7 chr6 12020921 12021213 -170394029 - AluSc SINE Alu -19 290 1 2223 109 0 13 chr6 12021841 12022153 -170393089 - AluSc SINE Alu -1 308 1 235 268 7 43 chr6 12022935 12023073 -170392169 + CT-rich Low_complexity Low_complexity 2 134 0 2139 123 7 7 chr6 12023495 12023805 -170391437 + AluSq SINE Alu 1 310 -3 898 189 18 0 chr6 12023939 12024108 -170391134 - MER5A DNA MER1_type 0 189 18 2152 177 33 17 chr6 12024200 12024619 -170390623 + MSTB LTR MaLR 1 426 0 22 56 0 0 chr6 12024622 12024658 -170390584 + AT_rich Low_complexity Low_complexity 1 36 0 2172 128 3 3 chr6 12025292 12025598 -170389644 - AluSq SINE Alu -7 306 1 2328 93 10 0 chr6 12025772 12026074 -170389168 - AluSg SINE Alu 0 310 6 1029 143 20 25 chr6 12027739 12027942 -170387300 + L1M3 LINE L1 5458 5659 -512 248 143 0 0 chr6 12027951 12027986 -170387256 + Alu SINE Alu 10 44 -258 335 228 97 69 chr6 12028942 12029087 -170386155 + MIR SINE MIR 56 204 -58 2488 303 119 27 chr6 12030921 12032465 -170382777 - L2 LINE L2 0 3313 1617 21 0 0 0 chr6 12032869 12032890 -170382352 + AT_rich Low_complexity Low_complexity 1 21 0 5279 99 15 0 chr6 12033134 12033918 -170381324 + L1PA14 LINE L1 5366 6161 0 262 283 172 0 chr6 12034280 12034379 -170380863 + MIR3 SINE MIR 87 202 -6 207 0 0 0 chr6 12034702 12034725 -170380517 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 571 278 58 11 chr6 12035215 12035486 -170379756 - MLT1G1 LTR MaLR 0 590 199 321 247 22 11 chr6 12035501 12035590 -170379652 + GA-rich Low_complexity Low_complexity 1 90 0 688 270 13 30 chr6 12035590 12035827 -170379415 - MLT1G1 LTR MaLR -360 235 3 1250 221 35 98 chr6 12036351 12036446 -170378796 + MLT1C LTR MaLR 2 101 -366 2201 110 0 19 chr6 12036446 12036754 -170378488 + AluSq SINE Alu 3 304 -9 1250 221 35 98 chr6 12036754 12037086 -170378156 + MLT1C LTR MaLR 101 397 -70 2045 101 14 3 chr6 12037086 12037373 -170377869 - AluSq SINE Alu -22 291 2 1250 221 35 98 chr6 12037373 12037433 -170377809 + MLT1C LTR MaLR 397 459 -8 183 284 69 60 chr6 12037817 12037933 -170377309 + L2 LINE L2 3182 3298 -15 722 315 58 24 chr6 12038267 12038683 -170376559 + LTR16B LTR ERVL 22 451 -13 582 271 69 32 chr6 12038686 12038874 -170376368 + MIR SINE MIR 51 245 -17 2273 92 3 0 chr6 12039162 12039456 -170375786 + AluSp SINE Alu 1 295 -18 361 344 82 25 chr6 12039555 12039799 -170375443 - L3 LINE CR1 -337 1240 983 1701 169 81 3 chr6 12041566 12041910 -170373332 - MLT1B LTR MaLR -10 380 10 688 133 6 139 chr6 12042110 12042275 -170372967 + FRAM SINE Alu 1 142 -34 222 37 0 0 chr6 12042275 12042302 -170372940 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2270 100 10 0 chr6 12043030 12043331 -170371911 + AluSp SINE Alu 1 304 -9 252 0 0 0 chr6 12044448 12044476 -170370766 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 604 221 0 0 chr6 12044476 12044607 -170370635 - MER3 DNA MER1_type -78 131 1 979 289 84 25 chr6 12044986 12045380 -170369862 - LTR16C LTR ERVL -4 487 71 2294 103 3 3 chr6 12049119 12049431 -170365811 + AluSx SINE Alu 1 312 0 735 156 50 0 chr6 12049458 12049599 -170365643 + L1MA9 LINE L1 6160 6307 -5 307 305 0 0 chr6 12050071 12050153 -170365089 + GA-rich Low_complexity Low_complexity 4 85 0 2256 95 0 0 chr6 12050981 12051266 -170363976 - AluSg SINE Alu -25 285 1 940 185 69 14 chr6 12051502 12051837 -170363405 - MER31B LTR ERV1 0 466 1 1523 171 109 64 chr6 12051943 12052383 -170362859 + MER31B LTR ERV1 1 460 -6 31 0 0 0 chr6 12052676 12052707 -170362535 + AT_rich Low_complexity Low_complexity 1 31 0 3138 143 62 15 chr6 12053124 12053741 -170361501 + L1MA8 LINE L1 5519 6164 -127 1262 216 87 0 chr6 12053744 12054054 -170361188 + Tigger3(Golem) DNA MER2_type 1 337 -2692 364 161 99 0 chr6 12054052 12054133 -170361109 + Tigger3(Golem) DNA MER2_type 2949 3037 0 * 597 190 0 0 chr6 12054133 12054254 -170360988 + L1MA8 LINE L1 6168 6288 -3 2349 77 3 3 chr6 12054257 12054554 -170360688 - AluY SINE Alu -13 298 2 270 81 0 0 chr6 12054569 12054606 -170360636 + (A)n Simple_repeat Simple_repeat 1 37 0 28 48 0 0 chr6 12055119 12055161 -170360081 + AT_rich Low_complexity Low_complexity 1 42 0 1096 206 42 36 chr6 12055216 12055522 -170359720 - L1MC4 LINE L1 0 8042 7735 1774 152 3 7 chr6 12057117 12057406 -170357836 + AluJo SINE Alu 1 288 -24 438 253 99 12 chr6 12057632 12057794 -170357448 - MIR SINE MIR -74 188 13 1947 129 0 14 chr6 12058551 12058829 -170356413 + AluSq SINE Alu 1 274 -39 269 297 25 0 chr6 12059003 12059121 -170356121 + MER103 DNA DNA 36 156 -10 2343 56 0 29 chr6 12059166 12059472 -170355770 + AluY SINE Alu 2 298 -13 1873 156 17 43 chr6 12059501 12059569 -170355673 + MER1B DNA MER1_type 1 69 -2641 2670 35 0 3 chr6 12059569 12059881 -170355361 + AluY SINE Alu 1 311 0 1873 156 17 43 chr6 12059881 12060158 -170355084 + MER1B DNA MER1_type 69 337 0 2405 88 0 0 chr6 12061931 12062226 -170353016 + AluSq SINE Alu 1 295 -18 270 250 29 0 chr6 12062314 12062382 -170352860 + MIR SINE MIR 82 151 -111 205 247 79 34 chr6 12062681 12062770 -170352472 - MIR SINE MIR -123 139 47 4707 62 10 0 chr6 12062828 12063437 -170351805 + L1PA8A LINE L1 5514 6128 -3 2085 116 0 7 chr6 12063625 12063917 -170351325 - AluSx SINE Alu -12 300 11 300 327 40 0 chr6 12064599 12064700 -170350542 - MIR SINE MIR -65 143 39 608 182 16 33 chr6 12064804 12064925 -170350317 + FLAM_A SINE Alu 13 131 -11 642 211 8 15 chr6 12065614 12065747 -170349495 + FLAM_A SINE Alu 1 132 -1 862 183 14 0 chr6 12065937 12066079 -170349163 + FRAM SINE Alu 1 144 -32 467 267 112 21 chr6 12066768 12066955 -170348287 + MIR SINE MIR 57 260 -2 1359 127 42 5 chr6 12067061 12067273 -170347969 - AluSg/x SINE Alu -10 302 83 23 54 0 0 chr6 12067938 12067975 -170347267 + AT_rich Low_complexity Low_complexity 1 37 0 2290 107 7 0 chr6 12070623 12070932 -170344310 + AluSp SINE Alu 1 311 -2 630 279 95 14 chr6 12071507 12071729 -170343513 - MIR SINE MIR -18 244 5 22 35 0 0 chr6 12072543 12072572 -170342670 + AT_rich Low_complexity Low_complexity 1 29 0 36 53 0 0 chr6 12075898 12075955 -170339287 + AT_rich Low_complexity Low_complexity 1 57 0 198 231 39 19 chr6 12076179 12076231 -170339011 - L3 LINE CR1 -11 1566 1514 522 289 80 20 chr6 12076676 12076877 -170338365 - MIR SINE MIR -22 240 28 583 271 173 0 chr6 12077313 12077527 -170337715 + MIR SINE MIR 10 260 -2 446 238 47 35 chr6 12077576 12077748 -170337494 + L1MC4a LINE L1 4903 5076 -1070 383 305 134 25 chr6 12077855 12078094 -170337148 + L1MC4a LINE L1 5641 5905 -1903 254 132 19 0 chr6 12078116 12078169 -170337073 + (TATG)n Simple_repeat Simple_repeat 3 56 0 843 267 74 65 chr6 12078572 12079240 -170336002 - L1ME3A LINE L1 -328 5842 5166 862 201 0 0 chr6 12079605 12079759 -170335483 + FRAM SINE Alu 20 173 -3 796 203 56 10 chr6 12079896 12080093 -170335149 + MER58 DNA MER1_type 3 208 -2212 308 285 65 46 chr6 12080150 12080410 -170334832 - L1ME3A LINE L1 -2468 3678 3414 393 276 95 40 chr6 12080602 12081098 -170334144 + L1ME LINE L1 4313 4835 -1311 742 214 78 29 chr6 12081269 12081475 -170333767 + MER58A DNA MER1_type 9 224 0 487 323 43 13 chr6 12081482 12081714 -170333528 + L1ME LINE L1 4996 5234 -912 402 246 26 7 chr6 12081737 12081955 -170333287 + L1ME LINE L1 5258 5481 -683 279 273 0 39 chr6 12082766 12082843 -170332399 + polypyrimidine Low_complexity Low_complexity 2 75 0 313 349 9 0 chr6 12082844 12082953 -170332289 - L2 LINE L2 -4 3309 3200 233 315 24 39 chr6 12083029 12083156 -170332086 + L2 LINE L2 2730 2854 -460 3119 180 83 9 chr6 12083780 12084463 -170330779 + MER50 LTR ERV1 1 734 0 282 177 63 13 chr6 12085343 12085422 -170329820 + MIR SINE MIR 167 249 -13 2031 130 46 16 chr6 12086576 12086946 -170328296 + L1MB2 LINE L1 5534 5914 -257 1819 171 0 16 chr6 12086946 12087250 -170327992 - AluJo SINE Alu -13 299 1 1077 198 49 64 chr6 12087255 12087583 -170327659 + MER21A LTR ERV1 544 866 -65 1835 112 4 0 chr6 12087636 12087878 -170327364 - AluSp SINE Alu -70 243 1 23 33 0 0 chr6 12087913 12087943 -170327299 + AT_rich Low_complexity Low_complexity 1 30 0 1227 190 65 27 chr6 12088023 12088360 -170326882 + L1MD2 LINE L1 6009 6358 -1 24 32 0 0 chr6 12088639 12088670 -170326572 + AT_rich Low_complexity Low_complexity 1 31 0 310 256 105 88 chr6 12090087 12090325 -170324917 + L1ME4a LINE L1 5868 6109 -12 809 179 0 8 chr6 12090340 12090474 -170324768 - FLAM_A SINE Alu 0 133 1 1959 90 7 25 chr6 12090504 12090781 -170324461 + AluY SINE Alu 38 309 -2 209 194 0 0 chr6 12090812 12090848 -170324394 + MER5B DNA MER1_type 1 36 -142 28 0 0 0 chr6 12091080 12091108 -170324134 + AT_rich Low_complexity Low_complexity 1 28 0 1093 206 73 24 chr6 12091344 12091452 -170323790 + MER58B DNA MER1_type 1 102 -2318 1651 181 40 13 chr6 12091452 12091756 -170323486 + AluJo SINE Alu 1 312 0 1093 206 73 24 chr6 12091756 12091934 -170323308 + MER58B DNA MER1_type 102 301 -40 751 184 0 84 chr6 12092336 12092515 -170322727 - MER5B DNA MER1_type -14 164 1 1138 131 0 29 chr6 12092846 12093021 -170322221 + AluJo SINE Alu 121 290 -22 221 288 72 24 chr6 12093109 12093234 -170322008 - L2 LINE L2 -773 2541 2411 909 91 0 15 chr6 12093414 12093546 -170321696 - L1PA10 LINE L1 -4 6164 6035 25 0 0 0 chr6 12093637 12093662 -170321580 + AT_rich Low_complexity Low_complexity 1 25 0 3390 256 94 13 chr6 12093753 12095012 -170320230 + L1MCc LINE L1 188 1564 -4858 1224 242 27 67 chr6 12095027 12095691 -170319551 + L1MCc LINE L1 1735 2569 -4553 254 298 106 11 chr6 12097018 12097112 -170318130 - MIR SINE MIR -69 139 37 966 196 105 24 chr6 12097309 12097518 -170317724 - MER8 DNA MER2_type 0 239 14 3305 157 65 25 chr6 12097521 12098157 -170317085 + LTR51 LTR ERV1 11 671 0 21 0 0 0 chr6 12098428 12098449 -170316793 + AT_rich Low_complexity Low_complexity 1 21 0 300 321 66 7 chr6 12098480 12098617 -170316625 - MER5A DNA MER1_type -27 162 18 216 352 77 0 chr6 12098929 12099020 -170316222 + L2 LINE L2 3158 3255 -17 1320 213 163 42 chr6 12099203 12099682 -170315560 + MLT1F LTR MaLR 6 542 0 601 255 13 13 chr6 12099867 12100016 -170315226 + MIR SINE MIR 112 260 -2 2100 108 10 10 chr6 12100145 12100442 -170314800 + AluSx SINE Alu 1 297 -15 809 144 0 0 chr6 12100479 12100597 -170314645 + FLAM_C SINE Alu 1 118 -25 2554 53 0 0 chr6 12100934 12101236 -170314006 - AluY SINE Alu -9 302 1 229 286 48 0 chr6 12101383 12101446 -170313796 + MIR SINE MIR 186 251 -11 7157 47 52 24 chr6 12101531 12102609 -170312633 - L1PA5 LINE L1 0 6154 5066 1573 184 100 10 chr6 12103515 12103739 -170311503 + MER44D DNA MER2_type 1 203 -2288 6754 126 66 14 chr6 12103739 12104582 -170310660 - Tigger3b DNA MER2_type -1797 1231 310 2298 59 0 21 chr6 12104582 12104868 -170310374 - AluY SINE Alu -5 306 27 6754 126 66 14 chr6 12104868 12105195 -170310047 - Tigger3b DNA MER2_type -2718 310 1 1573 184 100 10 chr6 12105195 12105280 -170309962 + MER44D DNA MER2_type 203 608 -1 423 0 0 0 chr6 12105308 12105355 -170309887 + (CA)n Simple_repeat Simple_repeat 2 48 0 1277 146 78 0 chr6 12106228 12106447 -170308795 - MER46A DNA MER2_type 0 236 1 262 341 45 11 chr6 12106505 12106593 -170308649 + MIR SINE MIR 19 109 -99 310 292 193 12 chr6 12107053 12107214 -170308028 + MIR SINE MIR 63 252 -10 327 256 112 56 chr6 12107363 12107488 -170307754 - L2 LINE L2 -4 3268 3137 508 285 220 0 chr6 12107603 12107803 -170307439 + MIR SINE MIR 7 250 -12 14161 114 52 18 chr6 12108442 12110781 -170304461 + Tigger1 DNA MER2_type 1 2418 0 349 314 121 54 chr6 12112385 12112774 -170302468 - L1M2 LINE L1 -5894 955 541 312 290 108 89 chr6 12112396 12113272 -170301970 + L1M2 LINE L1 677 1407 -5442 * 252 312 101 9 chr6 12114277 12114386 -170300856 - MIR3 SINE MIR -5 203 85 256 151 132 0 chr6 12114702 12114755 -170300487 + L2 LINE L2 3250 3309 -4 202 337 12 36 chr6 12115094 12115177 -170300065 + L3b LINE CR1 1379 1459 -124 377 98 0 0 chr6 12115459 12115510 -170299732 - THE1B-int LTR MaLR -1528 52 2 1083 110 27 82 chr6 12115512 12115731 -170299511 - THE1B LTR MaLR -1 363 157 2305 68 0 0 chr6 12115745 12116040 -170299202 - THE1-int LTR MaLR 0 1580 1286 521 202 28 90 chr6 12116146 12116324 -170298918 - MER96B DNA MER1_type? -1 416 250 * 556 167 0 0 chr6 12116217 12116337 -170298905 + MER96B DNA MER1_type? 60 179 -238 355 281 104 45 chr6 12116633 12116921 -170298321 - L1M4 LINE L1 -3587 2559 2255 378 308 0 54 chr6 12117326 12117456 -170297786 + MIR SINE MIR 32 154 -108 277 299 84 0 chr6 12117506 12117613 -170297629 + MIR SINE MIR 147 262 0 21 36 0 0 chr6 12117617 12117645 -170297597 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 12117670 12117691 -170297551 + AT_rich Low_complexity Low_complexity 1 21 0 1562 197 181 29 chr6 12118154 12118601 -170296641 - MLT2B1 LTR ERVL -1 519 5 420 274 127 0 chr6 12118752 12118909 -170296333 - MIR SINE MIR -6 256 80 880 245 129 19 chr6 12119034 12119360 -170295882 + MLT1J1 LTR MaLR 1 357 -93 2248 139 30 3 chr6 12119376 12119873 -170295369 + LTR24B LTR ERV1 1 569 -7 40 27 0 41 chr6 12120346 12120419 -170294823 + AT_rich Low_complexity Low_complexity 1 70 0 5400 163 32 8 chr6 12120420 12120695 -170294547 - L1MA3 LINE L1 0 6305 6038 2249 111 0 0 chr6 12120695 12120993 -170294249 - AluSq SINE Alu -15 298 1 5400 163 32 8 chr6 12120993 12122373 -170292869 - L1MA3 LINE L1 -267 6038 4611 355 182 82 12 chr6 12122655 12122797 -170292445 + (TA)n Simple_repeat Simple_repeat 1 132 -1736 6393 141 78 18 chr6 12122797 12123687 -170291555 - Tigger3b DNA MER2_type -1798 1230 252 2124 112 7 3 chr6 12123687 12123982 -170291260 - AluSx SINE Alu -16 296 1 6393 141 78 18 chr6 12123982 12124250 -170290992 - Tigger3b DNA MER2_type -2776 252 2 355 182 82 12 chr6 12124250 12124402 -170290840 + (TA)n Simple_repeat Simple_repeat 132 1868 0 599 297 107 10 chr6 12125590 12125890 -170289352 - MARNA DNA Mariner -194 392 64 741 172 0 0 chr6 12126227 12126355 -170288887 - FLAM_A SINE Alu -5 128 1 320 231 164 0 chr6 12126356 12126460 -170288782 - MIR SINE MIR -14 248 128 2035 192 63 18 chr6 12126460 12126902 -170288340 - MLT1C LTR MaLR 0 467 6 182 338 108 43 chr6 12127747 12127978 -170287264 + L2 LINE L2 2817 3062 -210 2184 117 3 3 chr6 12128855 12129154 -170286088 + AluSx SINE Alu 1 299 -13 5867 128 8 3 chr6 12129322 12130236 -170285006 + L1PA16 LINE L1 5238 6157 -9 25 0 0 0 chr6 12130236 12130261 -170284981 + AT_rich Low_complexity Low_complexity 1 25 0 2189 101 0 3 chr6 12130475 12130761 -170284481 - AluSg SINE Alu -25 285 1 311 289 26 58 chr6 12131701 12131857 -170283385 + L1ME4a LINE L1 5966 6116 -5 1150 254 191 9 chr6 12132036 12132816 -170282426 - L1ME LINE L1 -1200 4880 3885 5190 120 6 8 chr6 12132833 12133636 -170281606 - L1PB4 LINE L1 -6 6150 5349 21 0 0 0 chr6 12133884 12133905 -170281337 + AT_rich Low_complexity Low_complexity 1 21 0 3433 260 74 48 chr6 12136557 12137070 -170278172 - L1ME LINE L1 -2451 3629 3131 2156 132 0 0 chr6 12137070 12137381 -170277861 - AluSx SINE Alu -1 311 1 3433 260 74 48 chr6 12137381 12138900 -170276342 - L1ME LINE L1 -2949 3131 1654 2313 103 0 3 chr6 12138900 12139210 -170276032 + AluSc SINE Alu 1 309 0 3433 260 74 48 chr6 12139210 12140702 -170274540 - L1ME LINE L1 -4426 1654 19 317 276 191 0 chr6 12140850 12140955 -170274287 - L2 LINE L2 0 3272 3148 811 141 4 150 chr6 12140955 12141182 -170274060 - MER3 DNA MER1_type 0 209 16 258 367 108 25 chr6 12141455 12141741 -170273501 - L2 LINE L2 -854 2460 2151 200 237 0 0 chr6 12141766 12141804 -170273438 - MIR SINE MIR -30 232 195 671 222 119 11 chr6 12141845 12142030 -170273212 + MIR SINE MIR 47 251 -11 195 69 0 0 chr6 12142039 12142068 -170273174 + (TTA)n Simple_repeat Simple_repeat 1 29 0 235 288 220 0 chr6 12142076 12142194 -170273048 - MIR SINE MIR -71 191 48 269 336 67 8 chr6 12142900 12143019 -170272223 - L2 LINE L2 -1 3312 3187 22 106 0 0 chr6 12143139 12143224 -170272018 + AT_rich Low_complexity Low_complexity 1 85 0 319 216 40 0 chr6 12143306 12143380 -170271862 + L1MC4a LINE L1 6378 6454 -1354 * 474 271 50 13 chr6 12143357 12143582 -170271660 + L1MC4 LINE L1 6338 6616 -1221 6011 102 14 7 chr6 12143600 12145422 -170269820 - L1PA15 LINE L1 0 6165 4330 324 249 97 54 chr6 12145454 12145639 -170269603 + L1MCc LINE L1 82 274 -6149 * 5697 242 40 44 chr6 12145619 12146418 -170268824 + L1MCc LINE L1 1980 2781 -4160 2360 74 3 23 chr6 12146418 12146728 -170268514 - AluY SINE Alu -7 304 1 5697 242 40 44 chr6 12146728 12146961 -170268281 + L1MCc LINE L1 2781 3013 -3928 817 226 0 0 chr6 12146961 12147125 -170268117 + U1 snRNA snRNA 1 164 -1 5697 242 40 44 chr6 12147125 12147752 -170267490 + L1MCc LINE L1 3013 3641 -3300 2187 95 3 33 chr6 12147752 12148057 -170267185 + AluSx SINE Alu 1 296 -16 5697 242 40 44 chr6 12148057 12148875 -170266367 + L1MCc LINE L1 3641 4461 -2480 2299 105 0 0 chr6 12148875 12149170 -170266072 - AluSx SINE Alu -17 295 1 5697 242 40 44 chr6 12149170 12149934 -170265308 + L1MCc LINE L1 4461 5291 -1650 401 296 85 27 chr6 12149938 12150137 -170265105 + MIR SINE MIR 33 252 -10 515 283 14 0 chr6 12150261 12150406 -170264836 + LTR16B LTR ERVL 1 147 -317 412 246 82 8 chr6 12150409 12150531 -170264711 + HERV16 LTR ERVL 1108 1238 -3758 1866 308 66 21 chr6 12150561 12152012 -170263230 + HERV16 LTR ERVL 1453 3018 -1978 2356 61 0 10 chr6 12152012 12152309 -170262933 + AluY SINE Alu 1 294 -17 1866 308 66 21 chr6 12152309 12152385 -170262857 + HERV16 LTR ERVL 3018 3089 -1907 796 311 20 17 chr6 12152388 12152684 -170262558 - LTR16B LTR ERVL -131 333 37 276 77 0 0 chr6 12152776 12152815 -170262427 + (TG)n Simple_repeat Simple_repeat 1 39 0 421 185 146 92 chr6 12152818 12153078 -170262164 - LTR37B LTR ERV1 -58 410 137 917 217 5 51 chr6 12153097 12153314 -170261928 + MER20 DNA MER1_type 7 213 -6 261 171 0 0 chr6 12153338 12153379 -170261863 - LTR37B LTR ERV1 -376 92 52 1090 280 72 45 chr6 12153485 12154064 -170261178 + MLT1G1 LTR MaLR 1 595 0 2251 94 14 0 chr6 12156861 12157158 -170258084 + AluSx SINE Alu 1 301 -11 365 186 12 58 chr6 12158256 12158342 -170256900 + MER8 DNA MER2_type 158 239 0 240 309 106 11 chr6 12158539 12158633 -170256609 + MIR SINE MIR 37 139 -69 1224 242 27 67 chr6 12159960 12160624 -170254618 - L1MCc LINE L1 -4553 2569 1735 3329 257 89 18 chr6 12160639 12160908 -170254334 - L1MCc LINE L1 -4858 1564 1315 2874 0 0 0 chr6 12160908 12161215 -170254027 + AluY SINE Alu 1 307 -4 3329 257 89 18 chr6 12161215 12162218 -170253024 - L1MCc LINE L1 -5107 1315 188 25 0 0 0 chr6 12162309 12162334 -170252908 + AT_rich Low_complexity Low_complexity 1 25 0 909 91 0 15 chr6 12162425 12162557 -170252685 + L1PA10 LINE L1 6035 6164 -4 221 288 72 24 chr6 12162737 12162862 -170252380 + L2 LINE L2 2411 2541 -773 1138 131 0 29 chr6 12162950 12163125 -170252117 - AluJo SINE Alu -22 290 121 751 184 0 84 chr6 12163456 12163635 -170251607 + MER5B DNA MER1_type 1 164 -14 1187 206 73 24 chr6 12164037 12164215 -170251027 - MER58B DNA MER1_type -2119 301 102 1629 181 40 13 chr6 12164215 12164519 -170250723 - AluJo SINE Alu 0 312 1 1187 206 73 24 chr6 12164519 12164627 -170250615 - MER58B DNA MER1_type -2318 102 1 28 0 0 0 chr6 12164863 12164891 -170250351 + AT_rich Low_complexity Low_complexity 1 28 0 208 194 0 0 chr6 12165123 12165159 -170250083 - MER5B DNA MER1_type -142 36 1 1940 90 7 29 chr6 12165190 12165468 -170249774 - AluY SINE Alu -2 309 38 804 179 0 8 chr6 12165498 12165632 -170249610 + FLAM_A SINE Alu 1 133 0 24 32 0 0 chr6 12167297 12167328 -170247914 + AT_rich Low_complexity Low_complexity 1 31 0 1325 190 65 27 chr6 12167607 12167944 -170247298 - L1MD2 LINE L1 -1 6358 6009 23 33 0 0 chr6 12168024 12168054 -170247188 + AT_rich Low_complexity Low_complexity 1 30 0 1831 108 4 0 chr6 12168091 12168331 -170246911 + AluSp SINE Alu 3 243 -70 1186 198 49 64 chr6 12168384 12168712 -170246530 - MER21A LTR ERV1 -65 866 544 1793 171 0 16 chr6 12168717 12169021 -170246221 + AluJo SINE Alu 1 299 -13 2155 127 46 16 chr6 12169021 12169391 -170245851 - L1MB2 LINE L1 -257 5914 5534 282 177 63 13 chr6 12170545 12170624 -170244618 - MIR SINE MIR -13 249 167 3121 180 83 9 chr6 12171505 12172188 -170243054 - MER50 LTR ERV1 0 734 1 226 315 24 39 chr6 12172812 12172939 -170242303 - L2 LINE L2 -460 2854 2730 310 349 9 0 chr6 12173015 12173124 -170242118 + L2 LINE L2 3200 3309 -4 279 273 0 39 chr6 12173125 12173202 -170242040 + polypurine Low_complexity Low_complexity 2 75 0 203 189 0 0 chr6 12173459 12173496 -170241746 + (TA)n Simple_repeat Simple_repeat 2 38 0 413 304 44 15 chr6 12174015 12174488 -170240754 - L1ME LINE L1 -683 5481 4996 825 209 78 29 chr6 12174495 12174701 -170240541 - MER58A DNA MER1_type 0 224 9 519 290 85 37 chr6 12174803 12175368 -170239874 - L1ME LINE L1 -1242 4904 4313 365 285 65 46 chr6 12175560 12175820 -170239422 + L1ME3A LINE L1 3414 3678 -2468 858 203 56 10 chr6 12175877 12176074 -170239168 - MER58 DNA MER1_type -133 208 3 849 200 0 0 chr6 12176211 12176366 -170238876 - FRAM SINE Alu -2 174 20 976 262 76 67 chr6 12176731 12177399 -170237843 + L1ME3A LINE L1 5166 5842 -328 254 132 19 0 chr6 12177802 12177855 -170237387 + (CATA)n Simple_repeat Simple_repeat 3 56 0 383 305 134 25 chr6 12177877 12178116 -170237126 - L1MC4a LINE L1 -1903 5905 5641 491 238 47 35 chr6 12178223 12178395 -170236847 - L1MC4a LINE L1 -1070 5076 4903 572 271 173 0 chr6 12178444 12178658 -170236584 - MIR SINE MIR -2 260 10 535 284 80 20 chr6 12179094 12179295 -170235947 + MIR SINE MIR 28 240 -22 196 231 39 19 chr6 12179740 12179792 -170235450 + L3 LINE CR1 1514 1566 -11 36 53 0 0 chr6 12180016 12180073 -170235169 + AT_rich Low_complexity Low_complexity 1 57 0 22 35 0 0 chr6 12183407 12183436 -170231806 + AT_rich Low_complexity Low_complexity 1 29 0 630 279 95 14 chr6 12184250 12184472 -170230770 + MIR SINE MIR 5 244 -18 2264 107 7 0 chr6 12185047 12185356 -170229886 - AluSp SINE Alu -2 311 1 23 54 0 0 chr6 12188004 12188041 -170227201 + AT_rich Low_complexity Low_complexity 1 37 0 1353 127 42 5 chr6 12188706 12188919 -170226323 + AluSg/x SINE Alu 81 301 -9 468 267 112 21 chr6 12189025 12189212 -170226030 - MIR SINE MIR -2 260 57 864 183 14 0 chr6 12189901 12190043 -170225199 - FRAM SINE Alu -32 144 1 636 211 8 15 chr6 12190233 12190366 -170224876 - FLAM_A SINE Alu -1 132 1 605 182 16 33 chr6 12191055 12191176 -170224066 - FLAM_A SINE Alu -11 131 13 300 327 40 0 chr6 12191280 12191381 -170223861 + MIR SINE MIR 39 143 -65 2071 116 0 7 chr6 12192063 12192355 -170222887 + AluSx SINE Alu 11 300 -12 4711 61 10 0 chr6 12192543 12193151 -170222091 - L1PA8A LINE L1 -4 6127 5514 200 247 79 34 chr6 12193209 12193298 -170221944 + MIR SINE MIR 47 139 -123 277 250 29 0 chr6 12193597 12193665 -170221577 - MIR SINE MIR -111 151 82 2413 85 0 0 chr6 12193753 12194048 -170221194 - AluSq SINE Alu -18 295 1 1909 159 17 43 chr6 12195821 12196098 -170219144 - MER1B DNA MER1_type -2373 337 69 2555 39 0 3 chr6 12196098 12196408 -170218834 - AluY SINE Alu -2 309 1 1909 159 17 43 chr6 12196408 12196476 -170218766 - MER1B DNA MER1_type -2641 69 1 2308 49 0 29 chr6 12196505 12196812 -170218430 - AluY SINE Alu -12 299 2 312 297 25 0 chr6 12196857 12196975 -170218267 - MER103 DNA DNA -10 156 36 1886 115 0 0 chr6 12197166 12197427 -170217815 - AluSx SINE Alu -51 261 1 452 253 99 12 chr6 12198185 12198347 -170216895 + MIR SINE MIR 13 188 -74 1691 152 3 7 chr6 12198573 12198862 -170216380 - AluJo SINE Alu -24 288 1 1201 206 42 36 chr6 12200457 12200763 -170214479 + L1MC4 LINE L1 7735 8042 0 28 48 0 0 chr6 12200818 12200860 -170214382 + AT_rich Low_complexity Low_complexity 1 42 0 270 81 0 0 chr6 12201373 12201410 -170213832 + (T)n Simple_repeat Simple_repeat 1 37 0 2266 74 3 3 chr6 12201425 12201722 -170213520 + AluY SINE Alu 2 298 -13 634 190 0 0 chr6 12201725 12201846 -170213396 - L1MA8 LINE L1 -3 6288 6168 396 161 99 0 chr6 12201846 12201927 -170213315 - Tigger3(Golem) DNA MER2_type -1 3028 2940 * 1404 216 87 0 chr6 12201925 12202235 -170213007 - Tigger3(Golem) DNA MER2_type -2692 337 1 3410 139 66 14 chr6 12202235 12202855 -170212387 - L1MA8 LINE L1 -121 6170 5519 31 0 0 0 chr6 12203272 12203303 -170211939 + AT_rich Low_complexity Low_complexity 1 31 0 1730 168 109 64 chr6 12203596 12204036 -170211206 - MER31B LTR ERV1 -6 460 1 1040 185 69 14 chr6 12204142 12204477 -170210765 + MER31B LTR ERV1 1 466 0 2160 95 0 0 chr6 12204713 12204998 -170210244 + AluSg SINE Alu 1 285 -25 307 305 0 0 chr6 12205826 12205908 -170209334 + CT-rich Low_complexity Low_complexity 4 85 0 780 156 50 0 chr6 12206380 12206521 -170208721 - L1MA9 LINE L1 -5 6307 6160 2193 103 3 3 chr6 12206549 12206861 -170208381 - AluSx SINE Alu 0 312 1 490 183 11 48 chr6 12209851 12210037 -170205205 + GA-rich Low_complexity Low_complexity 2 180 0 343 281 83 0 chr6 12213196 12213317 -170201925 - L2 LINE L2 0 3313 3183 203 223 54 27 chr6 12213664 12213770 -170201472 + (TA)n Simple_repeat Simple_repeat 2 111 0 1564 210 74 0 chr6 12213770 12214094 -170201148 - MER7A DNA MER2_type 0 346 1 3661 196 70 78 chr6 12215591 12216199 -170199043 + MER45B DNA AcHobo 40 651 -930 2210 102 0 0 chr6 12216199 12216519 -170198723 + AluSx SINE Alu 1 320 0 3661 196 70 78 chr6 12216519 12216654 -170198588 + MER45B DNA AcHobo 651 786 -795 1898 122 0 20 chr6 12216654 12216983 -170198259 - AluSx SINE Alu 0 323 1 3661 196 70 78 chr6 12216983 12217226 -170198016 + MER45B DNA AcHobo 786 1024 -16 249 200 40 0 chr6 12217366 12217416 -170197826 - LTR16C LTR ERVL 0 491 440 2271 141 10 28 chr6 12217673 12218070 -170197172 + MLT1B LTR MaLR 1 390 0 585 283 21 16 chr6 12218183 12218370 -170196872 + MIR SINE MIR 26 213 -49 366 325 55 30 chr6 12218580 12218780 -170196462 - MIR SINE MIR -19 243 39 239 299 59 75 chr6 12218832 12219019 -170196223 - MIR SINE MIR -78 184 1 523 301 54 12 chr6 12219181 12219347 -170195895 + MIR3 SINE MIR 25 197 -11 416 315 167 0 chr6 12220357 12220519 -170194723 + MER5A DNA MER1_type 1 189 0 237 33 0 0 chr6 12220905 12220935 -170194307 + (CA)n Simple_repeat Simple_repeat 2 31 0 896 9 0 0 chr6 12221087 12221193 -170194049 + AluY SINE Alu 206 311 0 195 42 0 0 chr6 12221727 12221751 -170193491 + (TG)n Simple_repeat Simple_repeat 2 25 0 320 215 54 75 chr6 12221766 12221859 -170193383 - L1MC4 LINE L1 -1339 6703 6613 320 284 20 100 chr6 12221911 12222161 -170193081 + L1MCa LINE L1 1980 2209 -4217 216 100 67 33 chr6 12222162 12222222 -170193020 + (TA)n Simple_repeat Simple_repeat 1 62 0 317 246 112 76 chr6 12222228 12222452 -170192790 - L1MCa LINE L1 -4215 2211 1980 230 127 56 0 chr6 12222479 12222550 -170192692 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 315 246 18 61 chr6 12222613 12222727 -170192515 + L1MC4 LINE L1 6613 6721 -1321 * 345 198 81 63 chr6 12222650 12222761 -170192481 - L1MC4 LINE L1 -1321 6721 6609 343 223 23 23 chr6 12222762 12222892 -170192350 + (TA)n Simple_repeat Simple_repeat 1 130 0 2303 178 85 17 chr6 12223158 12223631 -170191611 - MLT1D LTR MaLR 0 505 1 2261 107 3 0 chr6 12224006 12224314 -170190928 + AluSq SINE Alu 1 309 -4 655 239 90 50 chr6 12225097 12225298 -170189944 - MER63A DNA MER1_type -1 209 1 283 323 15 8 chr6 12226992 12227125 -170188117 - L2 LINE L2 -785 2529 2396 307 257 50 30 chr6 12227495 12227596 -170187646 - L2 LINE L2 -1 3271 3169 1547 144 95 25 chr6 12227687 12227972 -170187270 - MLT1B LTR MaLR -85 305 1 7897 19 0 1 chr6 12228632 12230124 -170185118 - L1PA3 LINE L1 -3 6152 4660 651 267 224 0 chr6 12230974 12231255 -170183987 - LTR16A LTR ERVL -2 448 105 2037 161 45 29 chr6 12231257 12231678 -170183564 - MSTA LTR MaLR 0 428 1 345 313 92 54 chr6 12231856 12232270 -170182972 - MLT1L LTR MaLR -27 588 54 1582 107 0 0 chr6 12232547 12232762 -170182480 + AluSq SINE Alu 83 297 -16 350 328 79 6 chr6 12232762 12232939 -170182303 - L2 LINE L2 -954 2360 2171 1392 217 23 54 chr6 12233930 12234317 -170180925 + MLT1C LTR MaLR 53 427 -40 2197 114 0 0 chr6 12234352 12234658 -170180584 + AluSc SINE Alu 1 306 -3 255 257 88 80 chr6 12234997 12235110 -170180132 - MIR SINE MIR -39 223 110 477 162 0 178 chr6 12236318 12236509 -170178733 + MER69A DNA AcHobo 1 157 -20 219 148 33 16 chr6 12237103 12237164 -170178078 + CT-rich Low_complexity Low_complexity 2 63 0 288 316 13 0 chr6 12238082 12238161 -170177081 - L2 LINE L2 -2 3311 3232 289 248 132 25 chr6 12238631 12238752 -170176490 + MIR SINE MIR 118 251 -11 238 299 0 15 chr6 12239802 12239869 -170175373 - L2 LINE L2 -5 3308 3243 498 299 13 56 chr6 12240014 12240248 -170174994 - MARNA DNA Mariner -351 235 12 1507 118 12 16 chr6 12240637 12240882 -170174360 + AluJo SINE Alu 51 294 -18 415 28 0 56 chr6 12240991 12241063 -170174179 + SVA Other Other 1319 1386 0 24 67 0 0 chr6 12241072 12241117 -170174125 + AT_rich Low_complexity Low_complexity 1 45 0 343 323 21 0 chr6 12241982 12242075 -170173167 + MIR3 SINE MIR 86 180 -28 1089 127 0 0 chr6 12242956 12243113 -170172129 - AluSc SINE Alu -19 290 134 351 292 120 85 chr6 12243748 12244149 -170171093 + L2 LINE L2 2858 3272 0 215 133 22 0 chr6 12244411 12244456 -170170786 + (TG)n Simple_repeat Simple_repeat 1 46 0 540 175 108 0 chr6 12245841 12245961 -170169281 - MIR3 SINE MIR -5 203 71 2378 123 29 56 chr6 12246783 12246944 -170168298 + THE1B LTR MaLR 1 165 -199 2186 62 80 0 chr6 12246944 12247218 -170168024 - AluY SINE Alu -15 296 1 2378 123 29 56 chr6 12247218 12247430 -170167812 + THE1B LTR MaLR 165 364 0 220 250 0 33 chr6 12248513 12248573 -170166669 - MIR SINE MIR -66 142 85 1792 173 10 0 chr6 12249094 12249389 -170165853 + 7SLRNA srpRNA srpRNA 20 317 -3 2009 134 7 3 chr6 12249547 12249837 -170165405 + AluSc SINE Alu 1 291 -18 2310 105 0 0 chr6 12250939 12251234 -170164008 + AluSq SINE Alu 1 295 -18 182 260 160 50 chr6 12251454 12251554 -170163688 - L2 LINE L2 -7 3265 3155 375 297 48 41 chr6 12252504 12252675 -170162567 - MIR3 SINE MIR -15 193 20 740 233 0 11 chr6 12252722 12252898 -170162344 - L1MB8 LINE L1 0 6178 6005 227 231 0 19 chr6 12252900 12252952 -170162290 - L1MB8 LINE L1 -790 5384 5334 625 198 23 4 chr6 12252955 12253088 -170162154 - L1MB8 LINE L1 -170 5994 5857 1166 93 0 0 chr6 12253088 12253239 -170162003 - AluY SINE Alu -3 308 158 3241 170 35 29 chr6 12253239 12253686 -170161556 - L1MB8 LINE L1 -299 5879 5427 5507 109 30 8 chr6 12253686 12254449 -170160793 + LTR17 LTR ERV1 1 780 0 3241 170 35 29 chr6 12254449 12254732 -170160510 - L1MB8 LINE L1 -751 5427 5147 210 37 0 0 chr6 12256242 12256269 -170158973 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 186 269 179 8 chr6 12256270 12256404 -170158838 - L2 LINE L2 -14 3299 3143 330 304 88 48 chr6 12256442 12256715 -170158527 - MLT1L LTR MaLR -330 285 2 2062 107 0 0 chr6 12257113 12257385 -170157857 - AluSx SINE Alu -32 280 9 1147 68 0 0 chr6 12257396 12257529 -170157713 - AluSq/x SINE Alu -179 133 1 2348 79 10 10 chr6 12257539 12257844 -170157398 - AluSp SINE Alu -8 305 1 208 322 122 0 chr6 12257971 12258061 -170157181 - MIR SINE MIR -115 147 47 474 33 0 0 chr6 12258391 12258451 -170156791 + (TG)n Simple_repeat Simple_repeat 2 61 0 1462 168 50 21 chr6 12259072 12259352 -170155890 + AluJo SINE Alu 2 289 -23 348 297 74 34 chr6 12259469 12259644 -170155598 + MIR3 SINE MIR 4 185 -23 1153 43 21 0 chr6 12260560 12260701 -170154541 - AluY SINE Alu 0 311 168 225 94 0 0 chr6 12261483 12261515 -170153727 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 315 302 47 120 chr6 12261520 12261987 -170153255 - L2 LINE L2 -16 3256 2824 288 0 0 0 chr6 12262062 12262094 -170153148 + (CA)n Simple_repeat Simple_repeat 2 33 0 376 329 43 14 chr6 12262159 12262366 -170152876 - HERVL LTR ERVL -3685 1969 1757 288 304 60 15 chr6 12262874 12263075 -170152167 - HERVL LTR ERVL -4577 1187 978 263 344 16 0 chr6 12263368 12263490 -170151752 - HERVL LTR ERVL -5178 586 463 626 304 50 5 chr6 12263602 12263803 -170151439 + LTR16C LTR ERVL 50 259 -232 2010 142 30 0 chr6 12263805 12264107 -170151135 - AluSx SINE Alu -1 311 1 259 339 157 0 chr6 12264625 12264740 -170150502 + MIR3 SINE MIR 63 195 -13 247 246 0 0 chr6 12264745 12264802 -170150440 + GA-rich Low_complexity Low_complexity 3 59 0 416 306 82 20 chr6 12264812 12265008 -170150234 - MIR SINE MIR -54 208 1 466 222 187 12 chr6 12265407 12265578 -170149664 + L1ME3A LINE L1 5782 5982 -188 250 273 82 87 chr6 12265581 12265812 -170149430 + L1ME3A LINE L1 5924 6153 -17 1513 254 48 5 chr6 12265859 12266299 -170148943 + L1MD2 LINE L1 3375 3833 -2313 1523 129 21 0 chr6 12266306 12266539 -170148703 - AluSg/x SINE Alu -2 308 71 317 87 0 11 chr6 12266541 12266598 -170148644 - Alu SINE Alu -263 40 1 5630 125 16 3 chr6 12266608 12266913 -170148329 - L1PA16 LINE L1 -9 6157 5857 2130 135 6 0 chr6 12266913 12267224 -170148018 - AluSp SINE Alu 0 313 1 5630 125 16 3 chr6 12267224 12268519 -170146723 - L1PA16 LINE L1 -309 5857 4517 1555 182 40 17 chr6 12268544 12268840 -170146402 - MER61A LTR ERV1 -40 303 1 1189 224 54 62 chr6 12268845 12269234 -170146008 - L1 LINE L1 -1636 4510 4125 1102 243 68 0 chr6 12269234 12269514 -170145728 + L1P LINE L1 3826 4124 -2022 1061 209 13 125 chr6 12269510 12269923 -170145319 + L1MD2 LINE L1 5774 6074 -168 * 572 221 18 37 chr6 12269924 12270087 -170145155 + L1MD3 LINE L1 7835 7994 -1 574 325 140 62 chr6 12270090 12270700 -170144542 - L2 LINE L2 -621 2693 1993 321 89 357 0 chr6 12270700 12270756 -170144486 - MADE1 DNA Mariner 0 80 5 574 325 140 62 chr6 12270756 12271019 -170144223 - L2 LINE L2 -1321 1993 1752 1161 135 6 0 chr6 12271751 12271921 -170143321 - AluSg/x SINE Alu -13 297 127 872 144 0 0 chr6 12271947 12272072 -170143170 + AluSg SINE Alu 1 125 -185 246 116 0 0 chr6 12272402 12272445 -170142797 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 260 261 0 27 chr6 12272469 12272543 -170142699 - L1MD3 LINE L1 -21 8021 7897 732 164 246 29 chr6 12272554 12272761 -170142481 - L1MC4a LINE L1 -159 7649 7398 302 233 56 44 chr6 12273415 12273505 -170141737 - L2 LINE L2 0 3272 3182 294 354 102 48 chr6 12273560 12273805 -170141437 - L2 LINE L2 -358 2956 2683 3300 63 68 36 chr6 12273805 12274249 -170140993 - LTR22A LTR ERVK 0 458 1 294 354 102 48 chr6 12274249 12274376 -170140866 - L2 LINE L2 -631 2683 2564 672 223 57 11 chr6 12274452 12274627 -170140615 + MIR SINE MIR 61 243 -19 255 240 67 0 chr6 12274750 12274825 -170140417 - LTR67 LTR ERVL 0 557 478 3680 236 64 54 chr6 12274850 12277753 -170137489 + L1MEc LINE L1 44 3121 -3094 454 217 83 0 chr6 12277748 12277868 -170137374 + L1M4 LINE L1 4738 4867 -1279 * 273 289 138 19 chr6 12277886 12278045 -170137197 - LTR67 LTR ERVL -269 288 111 183 309 181 11 chr6 12278151 12278245 -170136997 + MIR SINE MIR 103 212 -50 2110 141 64 6 chr6 12278942 12279268 -170135974 - MER7A DNA MER2_type 0 346 4 2765 192 9 24 chr6 12279329 12279876 -170135366 - L1MC3 LINE L1 0 7785 7247 2180 127 7 86 chr6 12280705 12281123 -170134119 - MLT1B LTR MaLR 0 390 6 3169 233 61 31 chr6 12281125 12282186 -170133056 - Charlie2a DNA MER1_type -7 2855 1763 662 325 50 14 chr6 12282197 12282477 -170132765 - LTR16C LTR ERVL 0 491 202 3388 223 118 50 chr6 12282664 12282958 -170132284 - Charlie2a DNA MER1_type -1163 1699 1426 1968 144 7 10 chr6 12282958 12283263 -170131979 + AluJb SINE Alu 1 304 -8 3388 223 118 50 chr6 12283263 12284357 -170130885 - Charlie2a DNA MER1_type -1436 1426 217 608 293 95 16 chr6 12284446 12284763 -170130479 - L1MC/D LINE L1 -554 5616 5272 727 283 113 4 chr6 12284883 12285113 -170130129 - MIR SINE MIR -2 260 6 239 333 118 0 chr6 12285241 12285343 -170129899 - L2 LINE L2 -23 3249 3136 3644 119 20 6 chr6 12285440 12285944 -170129298 - MER9 LTR ERVK 0 511 1 218 326 240 27 chr6 12285956 12286214 -170129028 - L3 LINE CR1 -612 965 653 2052 238 57 2 chr6 12287499 12287994 -170127248 + Cheshire DNA MER1_type 27 548 -1872 * 7767 198 47 15 chr6 12287990 12289634 -170125608 + Cheshire DNA MER1_type 723 2420 0 1205 313 67 48 chr6 12289711 12290551 -170124691 - ERVL LTR ERVL -4146 1618 763 203 138 0 0 chr6 12290854 12290883 -170124359 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 773 208 167 67 chr6 12291236 12291416 -170123826 - LTR50 LTR ERVL -452 343 182 2056 102 9 78 chr6 12291416 12291748 -170123494 + AluSx SINE Alu 1 309 -3 773 208 167 67 chr6 12291748 12291879 -170123363 - LTR50 LTR ERVL -613 182 1 193 75 50 25 chr6 12292296 12292336 -170122906 + GA-rich Low_complexity Low_complexity 2 42 0 186 43 0 0 chr6 12293107 12293130 -170122112 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 399 41 0 0 chr6 12293129 12293178 -170122064 + (TG)n Simple_repeat Simple_repeat 2 50 0 398 344 13 0 chr6 12293398 12293549 -170121693 - MIR3 SINE MIR -2 206 54 5804 90 15 4 chr6 12294150 12294959 -170120283 + L1PA13 LINE L1 5346 6163 0 251 387 34 8 chr6 12295202 12295321 -170119921 + MIR3 SINE MIR 39 160 -48 1512 188 189 103 chr6 12295371 12295973 -170119269 + MLT1E1 LTR MaLR 1 654 0 674 211 0 0 chr6 12295973 12296116 -170119126 + FLAM_A SINE Alu 2 144 0 1733 152 157 11 chr6 12298114 12298477 -170116765 + MSTA LTR MaLR 1 416 -12 234 240 0 8 chr6 12299524 12299585 -170115657 + MIR SINE MIR 73 130 -78 323 341 32 0 chr6 12299876 12300002 -170115240 - L2 LINE L2 -4 3309 3180 1778 196 66 62 chr6 12300052 12300582 -170114660 + L1ME2 LINE L1 5631 6162 -2 402 237 21 57 chr6 12300581 12300775 -170114467 - L1M4 LINE L1 -1725 4421 4235 * 667 287 48 63 chr6 12300787 12300948 -170114294 - L1MEd LINE L1 -5014 1105 943 1798 180 20 3 chr6 12300948 12301253 -170113989 - AluSp SINE Alu -3 310 1 667 287 48 63 chr6 12301253 12301679 -170113563 - L1MEd LINE L1 -5176 943 527 1850 130 146 16 chr6 12302036 12302358 -170112884 + THE1B LTR MaLR 1 364 0 183 162 0 0 chr6 12302643 12302680 -170112562 + A-rich Low_complexity Low_complexity 1 37 0 700 207 0 0 chr6 12302818 12302939 -170112303 - FLAM_A SINE Alu -12 121 1 1725 251 83 21 chr6 12303037 12303520 -170111722 - MLT1F LTR MaLR -29 513 1 1750 267 33 100 chr6 12303520 12304194 -170111048 + L1MC4a LINE L1 5276 5903 -1905 1305 147 0 5 chr6 12304434 12304683 -170110559 + AluJo SINE Alu 87 334 0 210 344 0 0 chr6 12305023 12305084 -170110158 + L2 LINE L2 3250 3310 -3 306 0 0 0 chr6 12305448 12305482 -170109760 + (TA)n Simple_repeat Simple_repeat 2 35 0 2146 127 0 0 chr6 12305703 12306051 -170109191 + AluSx SINE Alu 1 312 0 186 319 56 44 chr6 12306667 12306827 -170108415 - MIR SINE MIR -13 249 88 962 205 5 30 chr6 12307752 12307952 -170107290 - MLT2D LTR ERVL 0 414 220 652 209 25 13 chr6 12308314 12308472 -170106770 + MER5B DNA MER1_type 10 169 -9 204 333 142 6 chr6 12308804 12308966 -170106276 + MIR SINE MIR 67 250 -12 1100 189 81 146 chr6 12309119 12309492 -170105750 + MLT1C LTR MaLR 53 449 -18 306 0 0 0 chr6 12309492 12309526 -170105716 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1963 103 0 48 chr6 12309526 12309818 -170105424 - AluSg SINE Alu -32 278 1 1100 189 81 146 chr6 12309818 12309887 -170105355 + MLT1C LTR MaLR 447 467 0 2295 97 3 3 chr6 12310763 12311063 -170104179 + AluSq SINE Alu 2 301 -12 372 263 63 74 chr6 12311725 12311915 -170103327 - MER112 DNA MER1_type -34 226 39 242 337 56 0 chr6 12312049 12312138 -170103104 - L2 LINE L2 -11 3261 3168 297 51 0 0 chr6 12312549 12312588 -170102654 + (CA)n Simple_repeat Simple_repeat 2 40 0 2071 153 0 0 chr6 12312765 12313066 -170102176 + AluSx SINE Alu 1 301 -11 2805 128 17 2 chr6 12314298 12314720 -170100522 - MSTA LTR MaLR 0 428 1 194 282 28 14 chr6 12314784 12314855 -170100387 - MIR SINE MIR -103 159 88 195 294 22 76 chr6 12315093 12315185 -170100057 - MIR SINE MIR -156 106 20 573 181 78 0 chr6 12315191 12315307 -170099935 + LTR64 LTR ERVK 1 125 -433 1570 160 111 0 chr6 12315308 12315596 -170099646 + LTR64 LTR ERVK 227 546 -12 263 185 0 136 chr6 12317298 12317343 -170097899 + MIR SINE MIR 76 107 -101 864 216 14 38 chr6 12317343 12317556 -170097686 - MER63A DNA MER1_type 0 210 3 263 185 0 136 chr6 12317556 12317591 -170097651 + MIR SINE MIR 107 145 -63 21 0 0 0 chr6 12319001 12319022 -170096220 + AT_rich Low_complexity Low_complexity 1 21 0 299 289 40 69 chr6 12319028 12319201 -170096041 + MIR3 SINE MIR 30 197 -11 1482 157 30 90 chr6 12320668 12321000 -170094242 - AluJo SINE Alu 0 312 1 2099 124 0 34 chr6 12321730 12322053 -170093189 - AluSx SINE Alu 0 312 1 181 277 21 0 chr6 12323013 12323060 -170092182 + MIR3 SINE MIR 123 170 -38 379 264 0 0 chr6 12324230 12324317 -170090925 + MER5A DNA MER1_type 20 106 -83 585 251 22 28 chr6 12324409 12324588 -170090654 - MER5B DNA MER1_type 0 178 1 433 338 27 5 chr6 12324919 12325138 -170090104 - MIR SINE MIR -25 237 14 1927 50 0 0 chr6 12325503 12325725 -170089517 - AluY SINE Alu -16 295 74 192 279 0 15 chr6 12326139 12326207 -170089035 - L2 LINE L2 -179 3093 3027 185 301 39 29 chr6 12326351 12326454 -170088788 - L2 LINE L2 -493 2821 2718 25 0 0 0 chr6 12326547 12326572 -170088670 + AT_rich Low_complexity Low_complexity 1 25 0 2141 108 0 3 chr6 12328804 12329119 -170086123 + AluSq SINE Alu 1 314 0 866 249 21 9 chr6 12329649 12329882 -170085360 + MIR SINE MIR 1 236 -26 235 175 0 0 chr6 12329974 12330014 -170085228 - MLT1I LTR MaLR 0 409 370 301 132 19 0 chr6 12330165 12330218 -170085024 + MER96 DNA MER1_type? 1 54 -121 4715 146 34 59 chr6 12330225 12330733 -170084509 + L1MB3 LINE L1 5165 5684 -499 1664 86 0 5 chr6 12330733 12330943 -170084299 + AluY SINE Alu 89 297 -14 4715 146 34 59 chr6 12330943 12331284 -170083958 + L1MB3 LINE L1 5684 5989 -194 2148 164 132 2 chr6 12331284 12331687 -170083555 + MSTB2 LTR MaLR 3 457 0 4715 146 34 59 chr6 12331687 12331875 -170083367 + L1MB3 LINE L1 5989 6180 -3 231 240 20 0 chr6 12331878 12331928 -170083314 + MER96 DNA MER1_type? 47 97 -78 2225 109 3 0 chr6 12332053 12332347 -170082895 - AluSg SINE Alu -15 295 1 510 173 0 0 chr6 12332932 12333036 -170082206 + GA-rich Low_complexity Low_complexity 1 104 0 402 305 78 95 chr6 12333387 12333797 -170081445 + L2 LINE L2 2867 3269 -3 413 308 8 8 chr6 12334699 12334816 -170080426 + MER5B DNA MER1_type 3 119 -59 247 257 112 107 chr6 12337978 12338165 -170077077 + MIR3 SINE MIR 16 203 -5 348 206 71 71 chr6 12338195 12338350 -170076892 + L2 LINE L2 2589 2743 -571 266 327 109 42 chr6 12338407 12338737 -170076505 + L2 LINE L2 2882 3233 -39 424 308 70 0 chr6 12339268 12339411 -170075831 - MER117 DNA MER1_type 0 197 45 1133 98 252 60 chr6 12341004 12341238 -170074004 - AluSg1 SINE Alu -30 279 1 240 231 0 0 chr6 12341248 12341326 -170073916 + (CA)n Simple_repeat Simple_repeat 2 79 0 494 321 0 22 chr6 12341365 12341549 -170073693 + (CA)n Simple_repeat Simple_repeat 1 180 0 439 217 39 39 chr6 12342995 12343124 -170072118 + MIR SINE MIR 86 214 -48 384 265 20 61 chr6 12346233 12346429 -170068813 + L1MC4 LINE L1 7854 8041 -1 2376 154 32 17 chr6 12348995 12349404 -170065838 + MSTB LTR MaLR 10 424 -2 243 0 0 0 chr6 12350198 12350225 -170065017 + (TC)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr6 12350224 12350251 -170064991 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 2330 105 3 0 chr6 12350812 12351117 -170064125 - AluSx SINE Alu -6 306 1 307 314 39 44 chr6 12351189 12351393 -170063849 - L2 LINE L2 -1000 2314 2112 1065 148 37 42 chr6 12351394 12351610 -170063632 - MER20 DNA MER1_type 0 219 5 987 298 127 53 chr6 12353455 12354775 -170060467 - L2 LINE L2 0 3313 1893 1703 182 10 3 chr6 12355880 12356176 -170059066 - AluJb SINE Alu -14 298 1 540 313 58 29 chr6 12356682 12357196 -170058046 - L1MEc LINE L1 -4614 1782 1254 236 247 65 65 chr6 12357196 12357350 -170057892 - L1MEc LINE L1 -5960 245 92 280 297 95 40 chr6 12357706 12357854 -170057388 - MLT2E LTR ERVL -425 203 48 245 406 0 0 chr6 12358048 12358149 -170057093 - MIR SINE MIR -78 130 30 1066 179 200 21 chr6 12361122 12361386 -170053856 + AluSx SINE Alu 1 307 0 677 98 59 0 chr6 12361513 12361615 -170053627 + L1MD1 LINE L1 6129 6236 -6 403 242 76 8 chr6 12361805 12361937 -170053305 + MIR3 SINE MIR 54 194 -14 1637 186 88 77 chr6 12362518 12362975 -170052267 + MLT1C LTR MaLR 6 467 0 2439 25 7 0 chr6 12363472 12363756 -170051486 + L1PA4 LINE L1 5867 6152 -3 22 0 0 0 chr6 12363756 12363778 -170051464 + AT_rich Low_complexity Low_complexity 1 22 0 2075 221 33 35 chr6 12364679 12365164 -170050078 + MLT1D LTR MaLR 7 490 -15 1186 260 54 59 chr6 12365279 12365876 -170049366 + L2 LINE L2 1860 2453 -861 711 326 120 13 chr6 12365955 12366467 -170048775 + L2 LINE L2 2747 3301 -12 367 272 33 82 chr6 12369721 12369905 -170045337 + MIR SINE MIR 46 220 -42 207 0 0 0 chr6 12369922 12369945 -170045297 + (A)n Simple_repeat Simple_repeat 1 23 0 1408 81 0 0 chr6 12370347 12370521 -170044721 - AluSp SINE Alu -5 308 135 1421 151 163 4 chr6 12372118 12372363 -170042879 + AluJb SINE Alu 2 285 -17 516 230 32 8 chr6 12374482 12374608 -170040634 + MER5A DNA MER1_type 25 153 -36 715 139 197 0 chr6 12374631 12374768 -170040474 + L1PA15 LINE L1 6001 6164 -1 278 156 172 115 chr6 12374932 12375054 -170040188 - MIR SINE MIR -11 251 123 668 176 0 29 chr6 12375225 12375361 -170039881 - MER5B DNA MER1_type -44 134 3 2189 114 69 32 chr6 12376662 12377038 -170038204 + MLT1B LTR MaLR 1 390 0 307 304 11 0 chr6 12377503 12377595 -170037647 - L3b LINE CR1 -84 1499 1407 192 269 19 0 chr6 12378108 12378160 -170037082 - L2 LINE L2 0 3272 3220 201 196 0 0 chr6 12378240 12378286 -170036956 + GA-rich Low_complexity Low_complexity 1 46 0 805 281 88 16 chr6 12378319 12378682 -170036560 - LTR16A LTR ERVL -3 447 59 363 256 141 16 chr6 12378741 12378862 -170036380 - MIR SINE MIR -125 137 2 2094 105 3 14 chr6 12379054 12379368 -170035874 + AluSg SINE Alu 1 311 0 433 328 29 0 chr6 12380340 12380511 -170034731 - MIR SINE MIR -39 223 48 189 0 0 0 chr6 12382274 12382295 -170032947 + (TG)n Simple_repeat Simple_repeat 2 22 0 198 103 0 0 chr6 12382481 12382510 -170032732 + (TG)n Simple_repeat Simple_repeat 1 29 0 1947 185 14 11 chr6 12384996 12385358 -170029884 - MLT1A1 LTR MaLR -2 363 1 488 269 51 56 chr6 12385440 12385656 -170029586 - MIR SINE MIR 0 262 48 2195 158 42 37 chr6 12385656 12386199 -170029043 + MLT2A2 LTR ERVL 1 554 0 2686 20 0 7 chr6 12386289 12386585 -170028657 - AluY SINE Alu -17 294 1 25 31 0 0 chr6 12386922 12386954 -170028288 + AT_rich Low_complexity Low_complexity 1 32 0 36 91 0 0 chr6 12386999 12387098 -170028144 + AT_rich Low_complexity Low_complexity 1 99 0 21 36 0 0 chr6 12387203 12387231 -170028011 + AT_rich Low_complexity Low_complexity 1 28 0 358 283 116 47 chr6 12387692 12387968 -170027274 - L2 LINE L2 0 3313 3019 440 322 89 46 chr6 12387998 12388606 -170026636 + L2 LINE L2 2067 2700 -614 277 290 0 0 chr6 12389075 12389137 -170026105 + L2 LINE L2 3242 3303 -10 5590 131 26 46 chr6 12389139 12390005 -170025237 + L1MA8 LINE L1 5296 6139 -152 1797 176 17 0 chr6 12390005 12390300 -170024942 + AluJb SINE Alu 1 300 -12 5590 131 26 46 chr6 12390300 12390447 -170024795 + L1MA8 LINE L1 6139 6288 -3 218 296 91 23 chr6 12390595 12390683 -170024559 - L2 LINE L2 -64 3208 3115 235 231 176 33 chr6 12391553 12391644 -170023598 + LTR33 LTR ERVL 418 521 0 180 337 137 0 chr6 12391651 12391746 -170023496 + L2 LINE L2 3154 3261 -11 7253 152 17 0 chr6 12391752 12393912 -170021330 + LTR21B-int LTR ERV1 3071 5333 -1196 734 254 0 11 chr6 12394237 12394418 -170020824 + LTR21B-int LTR ERV1 4953 5131 -455 2076 304 32 36 chr6 12395233 12396296 -170018946 + LTR21B-int LTR ERV1 5471 6529 0 1901 164 8 106 chr6 12396296 12396778 -170018464 + LTR21B LTR ERV1 1 435 -3 4665 198 64 67 chr6 12396805 12397466 -170017776 - L1MDb LINE L1 -3873 2714 2052 2772 32 0 3 chr6 12397466 12397778 -170017464 + AluY SINE Alu 1 311 0 4665 198 64 67 chr6 12397778 12399079 -170016163 - L1MDb LINE L1 -4535 2052 750 522 191 12 0 chr6 12399079 12399163 -170016079 - MER20 DNA MER1_type -134 85 1 2231 113 0 0 chr6 12399550 12399859 -170015383 + AluSg SINE Alu 1 309 -1 581 323 4 71 chr6 12401321 12401380 -170013862 + MIR SINE MIR 10 71 -191 1963 113 11 11 chr6 12401380 12401662 -170013580 + AluSx SINE Alu 1 282 -30 288 0 0 0 chr6 12401666 12401698 -170013544 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 581 323 4 71 chr6 12401698 12401902 -170013340 + MIR SINE MIR 74 260 -2 27 62 0 0 chr6 12402377 12402425 -170012817 + AT_rich Low_complexity Low_complexity 1 48 0 513 330 29 38 chr6 12402442 12402681 -170012561 - MIR SINE MIR 0 262 26 317 224 0 0 chr6 12402685 12402752 -170012490 + L1MC2 LINE L1 6259 6325 -19 22 0 0 0 chr6 12402755 12402777 -170012465 + AT_rich Low_complexity Low_complexity 1 22 0 370 175 0 0 chr6 12402939 12403002 -170012240 + MIR SINE MIR 199 261 -1 225 154 0 0 chr6 12403002 12403041 -170012201 + (CAT)n Simple_repeat Simple_repeat 1 39 0 902 184 54 11 chr6 12403861 12404046 -170011196 + MER3 DNA MER1_type 1 193 -16 524 250 10 0 chr6 12404047 12404151 -170011091 + MER81 DNA DNA 10 114 0 2097 101 0 11 chr6 12404383 12404669 -170010573 + AluSq SINE Alu 2 284 -29 2715 206 41 52 chr6 12404670 12404777 -170010465 - L1ME1 LINE L1 -108 6058 5951 1419 169 0 114 chr6 12404777 12405127 -170010115 - AluJo SINE Alu -2 310 1 2715 206 41 52 chr6 12405127 12405404 -170009838 - L1ME1 LINE L1 -215 5951 5672 744 188 0 39 chr6 12405404 12405532 -170009710 - FLAM_A SINE Alu -10 123 1 2715 206 41 52 chr6 12405532 12405820 -170009422 - L1ME1 LINE L1 -494 5672 5391 1802 181 3 7 chr6 12405820 12406118 -170009124 + AluJb SINE Alu 1 297 -15 2715 206 41 52 chr6 12406118 12406180 -170009062 - L1ME1 LINE L1 -775 5391 5330 338 131 16 16 chr6 12406183 12406244 -170008998 - AluJ/FRAM SINE Alu -10 292 232 393 103 35 0 chr6 12406249 12406307 -170008935 - MER41D LTR ERV1 0 557 498 288 0 0 0 chr6 12406309 12406341 -170008901 + (CA)n Simple_repeat Simple_repeat 2 33 0 229 238 12 12 chr6 12406341 12406425 -170008817 - L1MC4 LINE L1 -1347 6695 6612 240 188 0 43 chr6 12406442 12406511 -170008731 - L1MC4 LINE L1 -1340 6702 6637 322 229 14 0 chr6 12407284 12407354 -170007888 - Charlie7 DNA MER1_type -17 2595 2525 422 199 12 149 chr6 12407799 12407869 -170007373 - MER5A DNA MER1_type -1 188 151 1615 172 12 53 chr6 12407869 12408188 -170007054 + AluJo SINE Alu 1 306 -6 422 199 12 149 chr6 12408188 12408278 -170006964 - MER5A DNA MER1_type -38 151 50 3382 108 69 54 chr6 12409773 12410364 -170004878 + MER4A LTR ERV1 1 600 0 183 244 81 58 chr6 12411126 12411212 -170004030 - MER5A DNA MER1_type -25 164 77 486 281 8 9 chr6 12412706 12412852 -170002390 + MIR SINE MIR 9 152 -66 2449 154 65 0 chr6 12412977 12413379 -170001863 + MSTA LTR MaLR 1 428 0 4591 187 23 14 chr6 12413545 12413661 -170001581 + L1MB5 LINE L1 5169 5282 -892 2318 84 7 10 chr6 12413661 12413954 -170001288 + AluSc SINE Alu 1 294 -15 378 0 0 0 chr6 12413954 12413996 -170001246 + (CA)n Simple_repeat Simple_repeat 1 42 0 2318 84 7 10 chr6 12413996 12414012 -170001230 + AluSc SINE Alu 294 309 0 4591 187 23 14 chr6 12414012 12414025 -170001217 + L1MB5 LINE L1 5282 5293 -881 252 0 0 0 chr6 12414025 12414053 -170001189 + (CAA)n Simple_repeat Simple_repeat 3 30 0 4591 187 23 14 chr6 12414053 12414914 -170000328 + L1MB5 LINE L1 5293 6165 -9 224 195 0 0 chr6 12417023 12417064 -169998178 - L2 LINE L2 -2 3311 3271 26 30 0 0 chr6 12417221 12417254 -169997988 + AT_rich Low_complexity Low_complexity 1 33 0 279 232 440 0 chr6 12418865 12418990 -169996252 - MER5A DNA MER1_type 0 189 10 283 269 201 13 chr6 12419027 12419176 -169996066 + MIR SINE MIR 36 212 -50 188 211 92 26 chr6 12421269 12421345 -169993897 + MIR SINE MIR 182 262 0 2462 65 0 10 chr6 12421759 12422066 -169993176 - AluSp SINE Alu -9 304 1 28 0 0 0 chr6 12422468 12422496 -169992746 + AT_rich Low_complexity Low_complexity 1 28 0 886 322 65 28 chr6 12423816 12424018 -169991224 - ERVL LTR ERVL -2422 3342 3149 1908 153 20 0 chr6 12424018 12424318 -169990924 - AluSx SINE Alu -4 308 3 886 322 65 28 chr6 12424318 12424547 -169990695 - ERVL LTR ERVL -2615 3149 2895 515 221 92 46 chr6 12424567 12424762 -169990480 + MLT1I LTR MaLR 206 409 0 415 270 51 15 chr6 12425071 12425208 -169990034 + MLT1L LTR MaLR 135 276 -339 198 360 40 8 chr6 12425469 12425594 -169989648 + L3b LINE CR1 1132 1260 -323 22 0 0 0 chr6 12427418 12427440 -169987802 + AT_rich Low_complexity Low_complexity 1 22 0 423 311 17 0 chr6 12427609 12427728 -169987514 + LTR16B LTR ERVL 104 224 -240 * 1014 163 34 25 chr6 12427707 12427980 -169987262 + MER2 DNA MER2_type 23 345 0 203 128 77 0 chr6 12428204 12428243 -169986999 + L2 LINE L2 2780 2821 -493 268 365 0 9 chr6 12428474 12428581 -169986661 + MIR SINE MIR 71 176 -86 237 302 198 0 chr6 12428583 12428679 -169986563 - L2 LINE L2 -2 3311 3197 291 276 16 87 chr6 12428872 12429057 -169986185 + L2 LINE L2 1745 1916 -1398 1073 138 147 22 chr6 12429061 12429251 -169985991 - MLT1B LTR MaLR 0 390 225 2098 98 4 0 chr6 12429251 12429527 -169985715 + AluSg SINE Alu 29 305 -5 1073 138 147 22 chr6 12429527 12429607 -169985635 - MLT1B LTR MaLR -165 225 1 180 387 86 39 chr6 12429629 12429885 -169985357 + L2 LINE L2 1941 2208 -1106 905 186 30 30 chr6 12430463 12430630 -169984612 + L1PB4 LINE L1 5990 6156 0 4106 131 20 30 chr6 12431104 12431352 -169983890 - L1MA4 LINE L1 -5 6295 6046 231 36 0 0 chr6 12431352 12431380 -169983862 + (TA)n Simple_repeat Simple_repeat 2 29 0 4106 131 20 30 chr6 12431380 12431738 -169983504 - L1MA4 LINE L1 -254 6046 5694 1502 155 7 81 chr6 12431738 12432048 -169983194 + AluJo SINE Alu 14 300 -12 4106 131 20 30 chr6 12432048 12432136 -169983106 - L1MA4 LINE L1 -606 5694 5607 1914 210 87 0 chr6 12432136 12432621 -169982621 - L1M2b LINE L1 -6681 528 2 866 174 0 0 chr6 12432775 12432907 -169982335 + FLAM_C SINE Alu 1 132 -1 189 0 0 0 chr6 12434261 12434282 -169980960 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 301 254 0 0 chr6 12434443 12434506 -169980736 - L2 LINE L2 -1 3271 3209 180 189 27 0 chr6 12434660 12434697 -169980545 - MIR SINE MIR -147 115 78 315 273 91 10 chr6 12435408 12435507 -169979735 - L2 LINE L2 -19 3253 3147 1020 119 150 10 chr6 12436071 12436264 -169978978 - MSTB1 LTR MaLR -23 409 190 3992 122 72 26 chr6 12436353 12437093 -169978149 - LTR1 LTR ERV1 0 785 12 206 292 0 0 chr6 12437626 12437674 -169977568 - L2 LINE L2 -11 3261 3214 2398 95 0 0 chr6 12438229 12438525 -169976717 - AluSc SINE Alu -13 296 1 2211 151 33 15 chr6 12438718 12439109 -169976133 - MSTB LTR MaLR -20 406 9 605 301 62 10 chr6 12440646 12440839 -169974403 + MIR3 SINE MIR 2 204 -4 302 321 36 27 chr6 12441377 12441489 -169973753 - MIR SINE MIR -77 131 19 186 71 0 0 chr6 12441502 12441530 -169973712 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1996 128 0 4 chr6 12441533 12441814 -169973428 - AluSx SINE Alu -32 280 1 32918 108 11 57 chr6 12441924 12448374 -169966868 + L1PA7 LINE L1 12 6154 0 351 297 27 0 chr6 12448519 12448630 -169966612 + L2 LINE L2 3198 3311 -2 1928 140 68 3 chr6 12450154 12450490 -169964752 - MER46B DNA MER2_type 0 236 4 2579 116 6 3 chr6 12452095 12452458 -169962784 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr6 12452606 12452627 -169962615 + AT_rich Low_complexity Low_complexity 1 21 0 510 312 48 48 chr6 12453162 12453351 -169961891 + MIR3 SINE MIR 20 208 0 439 362 99 18 chr6 12453968 12454302 -169960940 + L2 LINE L2 2397 2757 -557 241 307 80 0 chr6 12454919 12455007 -169960235 + L2 LINE L2 3214 3308 -5 192 404 10 0 chr6 12455352 12455451 -169959791 + L3 LINE CR1 363 462 -1115 735 329 176 29 chr6 12455505 12456234 -169959008 + L3 LINE CR1 557 1392 -185 900 244 91 81 chr6 12456365 12456882 -169958360 + MLT1H LTR MaLR 13 534 -15 402 188 0 0 chr6 12458437 12458538 -169956704 + (TA)n Simple_repeat Simple_repeat 2 102 0 976 164 123 0 chr6 12459486 12459681 -169955561 + MER20 DNA MER1_type 1 219 0 369 0 0 0 chr6 12460232 12460273 -169954969 + (TG)n Simple_repeat Simple_repeat 1 41 0 249 238 155 0 chr6 12460687 12460771 -169954471 + MIR SINE MIR 85 181 -81 512 282 19 30 chr6 12460857 12461119 -169954123 + HAL1 LINE L1 1404 1662 -845 307 250 19 70 chr6 12461450 12461606 -169953636 + HAL1b LINE L1 764 911 -437 254 256 51 29 chr6 12461674 12461811 -169953431 + L1M4 LINE L1 4123 4262 -1884 309 344 43 5 chr6 12461917 12462103 -169953139 + L1M4 LINE L1 4418 4610 -1536 230 250 45 23 chr6 12462154 12462242 -169953000 + L1M4 LINE L1 4735 4824 -1322 1101 296 51 35 chr6 12462599 12463255 -169951987 + L1MC4a LINE L1 5199 5403 -743 3135 151 20 10 chr6 12463417 12464006 -169951236 + L1MB4 LINE L1 5586 6180 0 424 272 179 46 chr6 12464660 12464984 -169950258 - L3 LINE CR1 -107 1470 1104 1390 231 73 46 chr6 12465119 12465659 -169949583 + MLT1F1 LTR MaLR 1 564 -3 1909 149 0 0 chr6 12465798 12466066 -169949176 + AluSx SINE Alu 29 296 -16 2318 104 0 13 chr6 12466789 12467105 -169948137 + AluSx SINE Alu 1 312 0 889 189 0 6 chr6 12467729 12467893 -169947349 + FRAM SINE Alu 2 164 -2 22 0 0 0 chr6 12468151 12468173 -169947069 + AT_rich Low_complexity Low_complexity 1 22 0 4562 166 30 9 chr6 12468331 12469291 -169945951 - L1MB2 LINE L1 -40 6131 5158 301 169 0 0 chr6 12469288 12469347 -169945895 + L1MB2 LINE L1 5088 5146 -1000 * 5285 40 0 9 chr6 12469571 12470216 -169945026 + L1PA5 LINE L1 5516 6154 0 557 175 53 0 chr6 12470660 12470774 -169944468 - Zaphod DNA AcHobo 0 4031 3912 1342 251 9 0 chr6 12470775 12471094 -169944148 - MER82 DNA MER2_type 0 653 332 * 3357 127 5 2 chr6 12471093 12471602 -169943640 + MER1A DNA MER1_type 17 529 0 1144 214 109 3 chr6 12471609 12471903 -169943339 - MER82 DNA MER2_type -328 325 1 1122 187 32 54 chr6 12471903 12472217 -169943025 - Zaphod DNA AcHobo -119 3912 3606 2138 225 64 58 chr6 12472230 12472791 -169942451 - Zaphod DNA AcHobo -3045 986 417 2176 117 0 0 chr6 12472791 12473081 -169942161 + AluSx SINE Alu 1 290 -22 2138 225 64 58 chr6 12473081 12473373 -169941869 - Zaphod DNA AcHobo -3614 417 128 602 223 205 5 chr6 12473918 12474133 -169941109 - MIR SINE MIR 0 262 5 2451 63 0 13 chr6 12474354 12474656 -169940586 - AluY SINE Alu -13 298 1 248 236 45 34 chr6 12474803 12474892 -169940350 - MIR SINE MIR -138 124 35 2269 111 22 33 chr6 12476501 12476869 -169938373 - THE1B LTR MaLR 0 364 1 570 128 0 0 chr6 12476923 12477017 -169938225 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 21 57 0 0 chr6 12477133 12477168 -169938074 + AT_rich Low_complexity Low_complexity 1 35 0 229 164 27 0 chr6 12477711 12477784 -169937458 + (TA)n Simple_repeat Simple_repeat 2 76 0 23 101 0 0 chr6 12478166 12478245 -169936997 + AT_rich Low_complexity Low_complexity 1 79 0 589 222 112 50 chr6 12478520 12478858 -169936384 - HAL1 LINE L1 -163 2344 1986 443 269 36 36 chr6 12478883 12479050 -169936192 - L2 LINE L2 -1 3312 3146 502 194 0 0 chr6 12479279 12479377 -169935865 + FLAM_C SINE Alu 45 142 -1 207 296 16 64 chr6 12479392 12479517 -169935725 - L2 LINE L2 -338 2975 2857 809 140 0 28 chr6 12481284 12481462 -169933780 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 930 248 36 0 chr6 12482806 12483084 -169932158 - L1ME3A LINE L1 -5 6165 5878 258 32 0 0 chr6 12484324 12484355 -169930887 + (TG)n Simple_repeat Simple_repeat 1 31 0 364 341 34 11 chr6 12484980 12485152 -169930090 - L2 LINE L2 -564 2750 2572 2381 101 22 27 chr6 12485152 12485518 -169929724 - THE1B LTR MaLR 0 364 1 607 168 0 132 chr6 12485574 12485764 -169929478 - MER3 DNA MER1_type -3 206 42 696 274 39 55 chr6 12486153 12486460 -169928782 - LTR16B LTR ERVL 0 464 163 1801 141 25 91 chr6 12486466 12486693 -169928549 + THE1C LTR MaLR 5 196 -179 12597 51 0 0 chr6 12486693 12489051 -169926191 + L1PA6 LINE L1 3793 6153 -1 1801 141 25 91 chr6 12489051 12489220 -169926022 + THE1C LTR MaLR 196 375 0 411 270 22 7 chr6 12489231 12489368 -169925874 - LTR16B LTR ERVL -323 141 3 28 91 0 0 chr6 12489413 12489490 -169925752 + AT_rich Low_complexity Low_complexity 1 77 0 9779 213 57 23 chr6 12489606 12492643 -169922599 + L1MDa LINE L1 14 3171 -3369 2454 220 20 2 chr6 12492643 12493153 -169922089 + LTR53 LTR ERVL 1 519 0 9779 213 57 23 chr6 12493153 12493313 -169921929 + L1MDa LINE L1 3171 3324 -3216 2380 100 0 0 chr6 12493431 12493740 -169921502 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 12494252 12494281 -169920961 + AT_rich Low_complexity Low_complexity 1 29 0 269 281 25 0 chr6 12494487 12494608 -169920634 + (TA)n Simple_repeat Simple_repeat 1 124 0 411 262 140 26 chr6 12495434 12495663 -169919579 + L1ME4a LINE L1 5852 6106 -15 480 283 68 11 chr6 12496092 12496272 -169918970 + MIR SINE MIR 7 189 -68 426 310 134 9 chr6 12496414 12496646 -169918596 - MLT1L LTR MaLR -6 609 349 2882 200 19 23 chr6 12496793 12497442 -169917800 - L1MB8 LINE L1 0 6178 5533 823 163 20 48 chr6 12497449 12497700 -169917542 - L1M4c LINE L1 -3425 3532 3182 370 197 40 0 chr6 12497701 12497777 -169917465 + Tigger5 DNA MER2_type 1 79 -2244 336 231 0 0 chr6 12497780 12497845 -169917397 - Tigger5 DNA MER2_type -7 2316 2252 400 169 0 0 chr6 12497849 12497914 -169917328 + Tigger5 DNA MER2_type 2259 2323 0 707 231 79 43 chr6 12497914 12498446 -169916796 - L1M4c LINE L1 -3775 3182 2631 3585 227 87 18 chr6 12498463 12499484 -169915758 - L1M4c LINE L1 -5187 1672 581 10328 200 48 27 chr6 12499487 12500452 -169914790 - L1MC1 LINE L1 -192 6421 5478 2418 50 7 10 chr6 12500452 12500755 -169914487 - AluY SINE Alu -9 302 1 10328 200 48 27 chr6 12500755 12504191 -169911051 - L1MC1 LINE L1 -1135 5478 2116 2098 80 11 7 chr6 12504191 12504467 -169910775 - AluSc SINE Alu -2 307 31 10328 200 48 27 chr6 12504467 12504595 -169910647 - L1MC1 LINE L1 -4497 2116 1992 373 147 0 0 chr6 12504595 12504663 -169910579 - L1PB4 LINE L1 -3 6153 6086 10328 200 48 27 chr6 12504663 12506394 -169908848 - L1MC1 LINE L1 -4621 1992 27 1197 295 45 65 chr6 12506406 12507783 -169907459 - L1MEc LINE L1 -4796 1600 251 462 305 40 11 chr6 12507803 12507977 -169907265 - MLT1J LTR MaLR -326 185 7 2777 7 0 0 chr6 12508247 12508547 -169906695 + AluYa5 SINE Alu 1 300 -11 1417 241 21 48 chr6 12508747 12509221 -169906021 + L1ME2 LINE L1 5676 6136 -28 332 311 66 20 chr6 12509279 12509475 -169905767 + L1MC4 LINE L1 7836 8040 -2 6261 94 5 0 chr6 12509792 12510748 -169904494 - L1PA14 LINE L1 0 6161 5213 878 190 22 0 chr6 12510748 12510927 -169904315 - L1PA14 LINE L1 -1516 4630 4448 5760 39 3 0 chr6 12511718 12512415 -169902827 - L1PA5 LINE L1 0 6154 5456 407 271 107 77 chr6 12513550 12514029 -169901213 + MLT1K LTR MaLR 66 558 -30 755 160 0 0 chr6 12514361 12514480 -169900762 - AluJb SINE Alu 0 312 194 436 320 23 6 chr6 12514577 12514752 -169900490 + MER5A DNA MER1_type 6 183 -6 339 330 125 0 chr6 12515029 12515141 -169900101 + MER5B DNA MER1_type 1 126 -52 2063 135 47 84 chr6 12515489 12515730 -169899512 - Tigger2a DNA MER2_type -2274 434 216 1746 156 30 0 chr6 12515730 12515999 -169899243 + AluSx SINE Alu 6 282 -30 2063 135 47 84 chr6 12515999 12516208 -169899034 - Tigger2a DNA MER2_type -2492 216 1 2083 159 17 0 chr6 12516214 12516573 -169898669 + MER47A DNA MER2_type 1 365 -1 369 243 122 56 chr6 12517182 12517396 -169897846 + L1ME LINE L1 5521 5748 -373 2039 121 47 9 chr6 12517419 12517741 -169897501 + MER1B DNA MER1_type 1 334 -5 251 200 57 0 chr6 12517961 12518031 -169897211 + HAL1b LINE L1 1257 1330 -18 1330 173 46 0 chr6 12519068 12519305 -169895937 + Tigger7 DNA MER2_type 9 256 -2231 419 102 0 0 chr6 12519305 12519364 -169895878 - MER1B DNA MER1_type 0 329 271 * 1106 107 12 6 chr6 12519363 12519531 -169895711 - MER1B DNA MER1_type -126 171 3 479 184 11 0 chr6 12519550 12519637 -169895605 + Tigger7 DNA MER2_type 2396 2483 -8 28 48 0 0 chr6 12519759 12519801 -169895441 + AT_rich Low_complexity Low_complexity 1 42 0 297 276 72 46 chr6 12519888 12520040 -169895202 + L2 LINE L2 3152 3307 -6 2184 124 0 0 chr6 12520514 12520813 -169894429 - AluSg SINE Alu -11 299 1 356 171 219 38 chr6 12520972 12521077 -169894165 - L2 LINE L2 0 3313 3190 1924 142 6 31 chr6 12521275 12521592 -169893650 - AluJb SINE Alu -3 309 1 527 225 8 0 chr6 12521943 12522072 -169893170 - LTR16C LTR ERVL 0 491 362 568 292 120 25 chr6 12522228 12522469 -169892773 + MLT1H1 LTR MaLR 32 249 -306 2282 108 0 19 chr6 12522469 12522784 -169892458 + AluSp SINE Alu 1 309 -4 568 292 120 25 chr6 12522784 12522974 -169892268 + MLT1H1 LTR MaLR 249 504 -51 475 290 27 22 chr6 12523022 12523205 -169892037 - LTR16C LTR ERVL -266 225 42 309 51 0 0 chr6 12523474 12523513 -169891729 + (TG)n Simple_repeat Simple_repeat 2 40 0 1617 102 90 71 chr6 12524405 12524759 -169890483 + MER46B DNA MER2_type 1 236 0 347 316 0 0 chr6 12525097 12525195 -169890047 + MIR SINE MIR 81 178 -84 962 181 0 12 chr6 12525365 12525536 -169889706 - FRAM SINE Alu -8 168 1 195 253 274 68 chr6 12526356 12526502 -169888740 + MIR3 SINE MIR 33 208 0 285 156 0 0 chr6 12526546 12526591 -169888651 - MER69 DNA AcHobo -4 2522 2478 606 200 38 27 chr6 12526594 12526779 -169888463 - MER53 DNA DNA 0 189 3 293 216 11 0 chr6 12526797 12526885 -169888357 - MER69 DNA AcHobo -58 2468 2380 222 37 0 0 chr6 12528189 12528216 -169887026 + (TG)n Simple_repeat Simple_repeat 1 27 0 486 330 47 10 chr6 12529346 12529643 -169885599 + L1ME3A LINE L1 5524 5831 -339 2241 99 0 13 chr6 12529806 12530109 -169885133 + AluSc SINE Alu 1 299 -10 21 0 0 0 chr6 12530117 12530138 -169885104 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 12530210 12530241 -169885001 + AT_rich Low_complexity Low_complexity 1 31 0 188 35 35 0 chr6 12530290 12530319 -169884923 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 479 292 97 35 chr6 12530322 12530661 -169884581 + Tigger8 DNA MER2_type 276 635 -31 2206 110 7 3 chr6 12531258 12531557 -169883685 + AluSx SINE Alu 3 302 -10 188 23 47 47 chr6 12531566 12531609 -169883633 + (GAGAA)n Simple_repeat Simple_repeat 3 45 0 823 124 31 0 chr6 12531618 12531747 -169883495 + AluSg/x SINE Alu 176 308 -4 678 159 23 23 chr6 12531767 12531943 -169883299 + GA-rich Low_complexity Low_complexity 3 178 0 458 75 0 0 chr6 12533603 12533670 -169881572 + AluY SINE Alu 193 259 -52 297 0 0 0 chr6 12533937 12533970 -169881272 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 1285 156 135 8 chr6 12533975 12534112 -169881130 - AluJo SINE Alu -33 279 161 204 40 0 0 chr6 12534112 12534137 -169881105 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1285 156 135 8 chr6 12534137 12534243 -169880999 - AluJo SINE Alu -151 161 5 261 57 0 0 chr6 12534463 12534498 -169880744 + (CA)n Simple_repeat Simple_repeat 2 36 0 285 75 0 0 chr6 12534498 12534538 -169880704 + (GA)n Simple_repeat Simple_repeat 1 40 0 2202 102 10 0 chr6 12534932 12535227 -169880015 + AluSx SINE Alu 1 298 -14 1324 152 26 134 chr6 12535398 12535794 -169879448 + Charlie1b DNA MER1_type 1 321 -2440 2085 135 23 0 chr6 12535794 12536098 -169879144 + AluSx SINE Alu 1 311 -1 1324 152 26 134 chr6 12536098 12536282 -169878960 + Charlie1b DNA MER1_type 321 523 0 217 315 25 56 chr6 12536694 12536856 -169878386 - MER5A DNA MER1_type -22 167 11 667 78 78 37 chr6 12537267 12537486 -169877756 - L1MA1 LINE L1 0 6302 6019 6881 125 130 58 chr6 12537871 12539452 -169875790 + pTR5 LTR ERV1 743 2438 0 2230 125 0 0 chr6 12540725 12541030 -169874212 + AluSx SINE Alu 1 305 -7 23 78 0 0 chr6 12541099 12541150 -169874092 + AT_rich Low_complexity Low_complexity 1 51 0 678 167 0 0 chr6 12541700 12541832 -169873410 + (CCCTA)n Simple_repeat Simple_repeat 2 133 0 1898 102 0 0 chr6 12541856 12542101 -169873141 - AluSg SINE Alu -26 284 40 276 318 39 16 chr6 12542665 12542794 -169872448 + MIR SINE MIR 85 216 -46 246 32 0 0 chr6 12543987 12544018 -169871224 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr6 12544054 12544078 -169871164 + (A)n Simple_repeat Simple_repeat 1 24 0 439 82 0 0 chr6 12544112 12544173 -169871069 + Alu SINE Alu 1 61 -257 1540 87 10 0 chr6 12544173 12544369 -169870873 + AluSg/x SINE Alu 98 295 -17 488 312 49 40 chr6 12544862 12545189 -169870053 + MLT1I LTR MaLR 72 401 -8 688 309 23 9 chr6 12545287 12545507 -169869735 - MER58A DNA MER1_type 0 224 2 2172 109 0 3 chr6 12545541 12545834 -169869408 + AluSq SINE Alu 1 292 -21 270 180 66 16 chr6 12545860 12545921 -169869321 - MLT1C LTR MaLR -5 462 399 284 101 47 39 chr6 12545927 12546056 -169869186 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 1147 210 96 18 chr6 12546089 12546423 -169868819 - MLT1C LTR MaLR -63 404 45 1494 164 7 7 chr6 12546545 12546819 -169868423 - L1PB3 LINE L1 0 6154 5881 2206 101 10 3 chr6 12547913 12548209 -169867033 + AluSq SINE Alu 1 298 -15 314 280 23 30 chr6 12548225 12548357 -169866885 - MLT1I LTR MaLR -33 376 246 282 189 11 105 chr6 12548429 12548524 -169866718 - MLT1J LTR MaLR -325 186 101 21 57 0 0 chr6 12549590 12549625 -169865617 + AT_rich Low_complexity Low_complexity 1 35 0 260 319 71 31 chr6 12549731 12549967 -169865275 - L1ME LINE L1 -224 5897 5641 1972 142 3 31 chr6 12549967 12550284 -169864958 + AluJo SINE Alu 1 308 -4 260 319 71 31 chr6 12550284 12550387 -169864855 - L1ME LINE L1 -480 5641 5544 27 49 0 0 chr6 12550533 12550574 -169864668 + AT_rich Low_complexity Low_complexity 1 41 0 570 284 125 6 chr6 12550722 12551050 -169864192 - L1ME4a LINE L1 -193 5928 5562 32 26 0 0 chr6 12551134 12551173 -169864069 + AT_rich Low_complexity Low_complexity 1 39 0 278 262 119 57 chr6 12551341 12551585 -169863657 - HAL1b LINE L1 -684 664 406 746 276 68 44 chr6 12551592 12551976 -169863266 + MLT2B2 LTR ERVL 1 393 -122 336 24 0 0 chr6 12552003 12552044 -169863198 + (CA)n Simple_repeat Simple_repeat 2 42 0 1436 157 5 129 chr6 12552499 12552893 -169862349 + MER7A DNA MER2_type 4 346 0 2973 133 4 24 chr6 12553024 12553567 -169861675 + L1MA9 LINE L1 5781 6312 0 295 211 84 0 chr6 12553913 12553984 -169861258 - L2 LINE L2 -1 3312 3236 1911 179 19 16 chr6 12554660 12555024 -169860218 + MLT1A1 LTR MaLR 1 365 0 1392 225 17 28 chr6 12555921 12556281 -169858961 - MLT1A2 LTR MaLR 0 374 19 223 28 56 0 chr6 12557074 12557110 -169858132 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 2124 101 0 14 chr6 12557890 12558187 -169857055 + AluSx SINE Alu 1 293 -19 23 33 0 0 chr6 12559108 12559138 -169856104 + AT_rich Low_complexity Low_complexity 1 30 0 235 368 0 0 chr6 12559185 12559253 -169855989 + MIR3 SINE MIR 104 171 -37 842 206 20 9 chr6 12559280 12559548 -169855694 + L1MC4a LINE L1 6422 6616 -1192 312 275 0 22 chr6 12559549 12559640 -169855602 + L1MC4 LINE L1 6615 6703 -1339 237 250 0 0 chr6 12559640 12559700 -169855542 + (TA)n Simple_repeat Simple_repeat 2 61 0 3734 241 72 12 chr6 12559716 12560845 -169854397 + L1MC4a LINE L1 6605 7800 -8 212 301 0 55 chr6 12560900 12560973 -169854269 - L2 LINE L2 -3 3310 3242 432 0 0 0 chr6 12560977 12561025 -169854217 + (CA)n Simple_repeat Simple_repeat 2 49 0 529 305 126 40 chr6 12561141 12561515 -169853727 + L1MC4a LINE L1 4547 4952 -1194 4299 133 10 10 chr6 12561675 12562377 -169852865 - L1PA16 LINE L1 0 6166 5465 22 56 0 0 chr6 12562572 12562608 -169852634 + AT_rich Low_complexity Low_complexity 1 36 0 282 225 152 7 chr6 12562608 12562746 -169852496 + L1MC4a LINE L1 5312 5469 -2339 631 265 45 36 chr6 12562821 12563130 -169852112 + L1MC4a LINE L1 5600 5911 -1897 334 312 128 7 chr6 12563977 12564259 -169850983 + L2 LINE L2 2422 2737 -577 655 282 129 58 chr6 12564307 12564740 -169850502 + L2 LINE L2 2849 3312 -1 877 296 97 42 chr6 12565189 12565510 -169849732 + L2 LINE L2 2570 2872 -441 2408 172 48 26 chr6 12565510 12566057 -169849185 + MER89 LTR ERV1 1 559 0 877 296 97 42 chr6 12566057 12566435 -169848807 + L2 LINE L2 2872 3311 -2 1748 201 10 48 chr6 12566907 12567223 -169848019 - MLT2C1 LTR ERVL 0 397 99 2168 95 0 24 chr6 12567223 12567517 -169847725 + AluSq SINE Alu 1 287 -26 1748 201 10 48 chr6 12567517 12567613 -169847629 - MLT2C1 LTR ERVL -298 99 1 338 280 139 16 chr6 12567640 12567962 -169847280 + L2 LINE L2 2695 3044 -269 360 127 16 0 chr6 12568084 12568147 -169847095 + MER20 DNA MER1_type 3 66 -153 2341 169 7 18 chr6 12568178 12568633 -169846609 - L1MC1 LINE L1 -3 6330 5881 2648 169 88 2 chr6 12568633 12568827 -169846415 + MLT2B3 LTR ERVL 2 178 -376 219 36 0 0 chr6 12568827 12568855 -169846387 + (TC)n Simple_repeat Simple_repeat 1 28 0 2648 169 88 2 chr6 12568855 12569151 -169846091 + MLT2B3 LTR ERVL 178 534 -20 249 176 14 54 chr6 12569151 12569225 -169846017 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 584 84 11 73 chr6 12569227 12569405 -169845837 + (TCTA)n Simple_repeat Simple_repeat 3 169 0 1367 138 32 0 chr6 12569460 12569706 -169845536 - L1MC1 LINE L1 -447 5886 5633 721 147 66 0 chr6 12569706 12569842 -169845400 + MSTB LTR MaLR 1 145 -281 774 250 246 13 chr6 12569842 12569995 -169845247 - L2 LINE L2 -1283 2031 1915 1532 188 140 11 chr6 12569995 12570346 -169844896 - MSTD LTR MaLR 0 396 1 774 250 246 13 chr6 12570346 12570640 -169844602 - L2 LINE L2 -1399 1915 1480 1327 260 104 16 chr6 12571367 12571911 -169843331 + MLT1E2 LTR MaLR 6 602 -52 318 46 82 8 chr6 12571939 12571995 -169843247 - MLT2A2 LTR ERVL 0 453 402 291 245 31 51 chr6 12572051 12572149 -169843093 + MLT1E1 LTR MaLR 207 302 -352 204 0 0 77 chr6 12572163 12572202 -169843040 + (TA)n Simple_repeat Simple_repeat 2 37 0 1176 95 0 6 chr6 12572202 12572370 -169842872 - MLT2A1 LTR ERVL -58 386 220 2267 108 3 7 chr6 12572669 12572974 -169842268 - AluSq SINE Alu -9 304 1 348 307 64 36 chr6 12573646 12573786 -169841456 - MIR SINE MIR -72 190 47 181 315 19 0 chr6 12573882 12573936 -169841306 - L2 LINE L2 -8 3264 3210 248 373 0 0 chr6 12574064 12574131 -169841111 - L2 LINE L2 -21 3251 3185 2478 67 0 3 chr6 12574725 12575024 -169840218 + AluSp SINE Alu 5 302 -11 2156 114 0 0 chr6 12575604 12575884 -169839358 - AluSx SINE Alu -32 280 1 186 43 0 0 chr6 12576035 12576058 -169839184 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 919 177 86 3 chr6 12576059 12576249 -169838993 - MER21B LTR ERV1 -355 576 313 1826 151 18 0 chr6 12576546 12576848 -169838394 - AluSx SINE Alu 0 307 1 1427 162 41 4 chr6 12576879 12577150 -169838092 - L1MB2 LINE L1 -3 6168 5888 777 291 13 4 chr6 12577265 12577492 -169837750 - MIR SINE MIR -32 230 2 230 257 50 86 chr6 12580017 12580157 -169835085 - L2 LINE L2 -832 2482 2348 2123 137 0 16 chr6 12580291 12580606 -169834636 + AluSx SINE Alu 1 310 -2 225 65 0 0 chr6 12581240 12581271 -169833971 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2224 132 0 3 chr6 12582549 12582852 -169832390 - AluSx SINE Alu -10 302 1 219 146 0 0 chr6 12583290 12583331 -169831911 + (TG)n Simple_repeat Simple_repeat 2 42 0 954 293 97 0 chr6 12583473 12583804 -169831438 + MER69 DNA AcHobo 26 388 -2138 403 186 8 108 chr6 12583841 12583970 -169831272 + MER69 DNA AcHobo 579 694 -532 2303 233 89 12 chr6 12584000 12584808 -169830434 + MER69 DNA AcHobo 1656 2525 -1 1546 202 50 3 chr6 12584878 12585175 -169830067 + AluJo SINE Alu 1 311 -1 472 317 130 25 chr6 12585176 12585608 -169829634 - L1 LINE L1 -1137 5009 4533 253 189 140 35 chr6 12586206 12586349 -169828893 - L1 LINE L1 -2400 3746 3589 2539 220 73 24 chr6 12586591 12587522 -169827720 - Charlie7 DNA MER1_type -32 2580 1604 1849 245 84 24 chr6 12587603 12588451 -169826791 - Charlie2a DNA MER1_type -46 2816 1918 381 269 39 32 chr6 12589003 12589159 -169826083 + L1ME3A LINE L1 6005 6161 -9 2896 227 92 70 chr6 12589162 12590668 -169824574 - Charlie2a DNA MER1_type -1106 1756 218 1356 105 0 0 chr6 12591126 12591307 -169823935 - AluSg/x SINE Alu -2 310 130 21 0 0 0 chr6 12591315 12591336 -169823906 + AT_rich Low_complexity Low_complexity 1 21 0 358 277 84 60 chr6 12591641 12591756 -169823486 - L1 LINE L1 -2794 3352 3241 2375 87 3 0 chr6 12591756 12592056 -169823186 - AluSc SINE Alu -8 301 1 358 277 84 60 chr6 12592056 12592225 -169823017 - L1 LINE L1 -2905 3241 3061 930 106 75 58 chr6 12592252 12592478 -169822764 - L1MA7 LINE L1 -9 6282 6053 1291 131 0 0 chr6 12592488 12592687 -169822555 - MER41A LTR ERV1 -88 466 268 358 148 0 0 chr6 12592687 12592748 -169822494 - L1MA9 LINE L1 -244 6068 6008 1268 221 74 14 chr6 12594356 12594723 -169820519 - L1MB7 LINE L1 0 6184 5796 189 0 0 0 chr6 12595005 12595026 -169820216 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2178 109 0 0 chr6 12595041 12595324 -169819918 - AluSq SINE Alu -30 283 1 313 304 52 0 chr6 12595437 12595552 -169819690 + MIR3 SINE MIR 75 195 -13 22 35 0 0 chr6 12595898 12595927 -169819315 + AT_rich Low_complexity Low_complexity 1 29 0 695 180 7 50 chr6 12596268 12596407 -169818835 - FLAM_A SINE Alu 0 133 1 1593 186 10 20 chr6 12596513 12596809 -169818433 + AluJo SINE Alu 1 293 -19 26 64 0 0 chr6 12596816 12596863 -169818379 + AT_rich Low_complexity Low_complexity 1 47 0 21 71 0 0 chr6 12597581 12597623 -169817619 + AT_rich Low_complexity Low_complexity 1 42 0 2727 264 116 56 chr6 12597803 12598513 -169816729 + HAL1 LINE L1 10 676 -1831 2073 124 10 0 chr6 12598513 12598804 -169816438 - AluSx SINE Alu -18 294 1 2727 264 116 56 chr6 12598804 12599378 -169815864 + HAL1 LINE L1 676 1214 -1293 1459 106 0 49 chr6 12599378 12599604 -169815638 + AluY SINE Alu 40 254 -57 2727 264 116 56 chr6 12599604 12600166 -169815076 + HAL1 LINE L1 1214 1967 -540 4136 113 41 23 chr6 12600192 12600457 -169814785 - Tigger3(Golem) DNA MER2_type 0 3029 2770 2333 72 0 31 chr6 12600457 12600776 -169814466 - AluSg SINE Alu -1 309 1 4136 113 41 23 chr6 12600776 12601242 -169814000 - Tigger3(Golem) DNA MER2_type -259 2770 2285 624 204 0 0 chr6 12601242 12601350 -169813892 - Tigger3(Golem) DNA MER2_type -2921 108 1 876 284 73 57 chr6 12601350 12601843 -169813399 + HAL1 LINE L1 2007 2507 0 441 272 61 0 chr6 12602355 12602469 -169812773 + L2 LINE L2 3193 3313 0 221 267 58 67 chr6 12602759 12602879 -169812363 + MIR SINE MIR 32 150 -112 189 286 71 0 chr6 12603359 12603429 -169811813 - MIR3 SINE MIR -27 181 107 1972 131 34 7 chr6 12603747 12604045 -169811197 - AluJb SINE Alu -6 306 1 264 125 62 0 chr6 12605355 12605403 -169809839 - MIR SINE MIR -91 171 121 270 81 0 0 chr6 12606586 12606623 -169808619 + (CA)n Simple_repeat Simple_repeat 2 38 0 375 192 8 17 chr6 12607506 12607626 -169807616 + (TA)n Simple_repeat Simple_repeat 1 119 0 1034 118 82 165 chr6 12607652 12607755 -169807487 - MER44D DNA MER2_type -1908 583 473 2182 96 48 0 chr6 12607755 12608046 -169807196 - AluSx SINE Alu -7 305 1 1034 118 82 165 chr6 12608046 12608257 -169806985 - MER44D DNA MER2_type -2018 473 25 1292 179 26 15 chr6 12608660 12608933 -169806309 - L1MD3 LINE L1 0 7995 7720 737 299 61 0 chr6 12609052 12609266 -169805976 - MIR SINE MIR -28 234 8 1954 156 3 7 chr6 12609534 12609842 -169805400 - AluJb SINE Alu -4 308 2 198 167 0 0 chr6 12609876 12609912 -169805330 + CT-rich Low_complexity Low_complexity 1 36 0 218 311 131 16 chr6 12610078 12610200 -169805042 + MIR3 SINE MIR 15 150 -58 488 239 128 51 chr6 12610347 12610581 -169804661 - L2 LINE L2 -3 3310 3059 1328 177 39 84 chr6 12610918 12611252 -169803990 + MLT1B LTR MaLR 1 319 -71 376 314 238 0 chr6 12611810 12611982 -169803260 + MIR SINE MIR 48 260 -2 250 194 32 118 chr6 12612243 12612283 -169802959 - MER94 DNA DNA -25 109 67 2370 65 3 0 chr6 12612283 12612573 -169802669 - AluY SINE Alu -20 291 1 250 194 32 118 chr6 12612573 12612625 -169802617 - MER94 DNA DNA -67 67 25 206 210 43 43 chr6 12614197 12614335 -169800907 + (CCGGG)n Simple_repeat Simple_repeat 5 142 0 195 100 0 0 chr6 12616319 12616349 -169798893 + (CCCCCT)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr6 12616531 12616559 -169798683 + GC_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr6 12616840 12616867 -169798375 + (TG)n Simple_repeat Simple_repeat 1 27 0 646 220 115 11 chr6 12618201 12618392 -169796850 - MIR SINE MIR -18 244 34 308 258 205 0 chr6 12618497 12618648 -169796594 + MIR SINE MIR 71 252 -10 675 264 135 45 chr6 12618926 12619259 -169795983 - MLT1I LTR MaLR 0 409 47 301 253 13 13 chr6 12619954 12620029 -169795213 + L2 LINE L2 3239 3313 0 228 246 72 0 chr6 12621137 12621206 -169794036 + L2 LINE L2 3240 3313 0 3672 118 128 94 chr6 12621369 12622604 -169792638 - pTR5 LTR ERV1 -133 2038 6 2236 94 26 10 chr6 12625041 12625348 -169789894 - AluSx SINE Alu 0 312 1 2218 102 3 0 chr6 12625834 12626127 -169789115 - AluSq SINE Alu -19 294 1 2253 102 0 3 chr6 12626339 12626632 -169788610 - AluSg SINE Alu -18 292 1 290 294 199 0 chr6 12626692 12626828 -169788414 + MIR SINE MIR 83 245 -17 24 32 0 0 chr6 12628411 12628442 -169786800 + AT_rich Low_complexity Low_complexity 1 31 0 346 173 77 77 chr6 12629008 12629112 -169786130 - MIR3 SINE MIR -7 201 98 682 194 56 0 chr6 12629160 12629304 -169785938 - MIR SINE MIR -34 228 77 2179 127 0 0 chr6 12629920 12630220 -169785022 + AluSq SINE Alu 1 300 -13 996 217 98 0 chr6 12631120 12631323 -169783919 + MER58A DNA MER1_type 2 224 0 1699 245 47 14 chr6 12632854 12633339 -169781903 - L1MB8 LINE L1 0 6178 5678 2535 237 115 36 chr6 12633380 12635175 -169780067 - L1M4 LINE L1 -3783 3174 1206 317 302 77 30 chr6 12635783 12636018 -169779224 - L1M4 LINE L1 -6296 559 314 2454 60 7 13 chr6 12636302 12636604 -169778638 - AluY SINE Alu -11 300 1 507 244 138 41 chr6 12636634 12636873 -169778369 + MIR SINE MIR 1 256 -6 265 130 0 43 chr6 12637183 12637229 -169778013 + Tigger5 DNA MER2_type 2 45 -2278 * 1667 124 35 4 chr6 12637227 12637485 -169777757 + Tigger5 DNA MER2_type 2054 2319 -4 243 0 0 0 chr6 12637485 12637512 -169777730 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 12637906 12637934 -169777308 + AT_rich Low_complexity Low_complexity 1 28 0 337 262 129 29 chr6 12640313 12640523 -169774719 + L1ME4a LINE L1 5637 5867 -254 2100 108 13 25 chr6 12640784 12641099 -169774143 + AluSx SINE Alu 1 311 -1 197 356 0 0 chr6 12641101 12641160 -169774082 - L2 LINE L2 -228 3044 2986 1310 202 19 54 chr6 12641860 12642177 -169773065 - AluJo SINE Alu -6 306 1 764 222 80 9 chr6 12642322 12642547 -169772695 + Charlie4a DNA MER1_type 264 504 -4 2200 86 0 4 chr6 12642558 12642921 -169772321 + AluSc SINE Alu 5 366 0 269 299 147 11 chr6 12642996 12643173 -169772069 + MIR SINE MIR 53 253 -9 2289 131 118 5 chr6 12644830 12645211 -169770031 - MSTA LTR MaLR 0 428 5 2531 55 0 10 chr6 12645300 12645607 -169769635 + AluY SINE Alu 1 304 -7 1992 132 14 0 chr6 12645825 12646121 -169769121 - AluY SINE Alu -11 300 1 2718 23 0 7 chr6 12646235 12646543 -169768699 - AluYb8 SINE Alu -12 306 1 725 93 0 10 chr6 12646545 12646642 -169768600 - AluJb SINE Alu -14 298 203 27 0 0 0 chr6 12646683 12646710 -169768532 + AT_rich Low_complexity Low_complexity 1 27 0 346 279 91 19 chr6 12646889 12647043 -169768199 + MER104 DNA Tc2 4 168 -12 288 305 47 15 chr6 12647054 12647201 -169768041 - L1P LINE L1 -1123 5023 4872 2326 103 0 16 chr6 12647518 12647829 -169767413 - AluSx SINE Alu -6 306 1 250 262 71 24 chr6 12647989 12648073 -169767169 - MER20B DNA MER1_type -626 157 70 220 146 0 49 chr6 12649682 12649723 -169765519 - MER91B DNA MER1_type -127 63 25 350 275 76 57 chr6 12650444 12650655 -169764587 - MIR SINE MIR -1 261 47 2388 84 0 7 chr6 12650661 12650957 -169764285 + AluSc SINE Alu 1 294 -15 279 0 0 0 chr6 12651008 12651039 -169764203 + (TG)n Simple_repeat Simple_repeat 2 32 0 2231 92 0 0 chr6 12651039 12651321 -169763921 - AluSg SINE Alu -28 282 1 21 0 0 0 chr6 12652660 12652681 -169762561 + AT_rich Low_complexity Low_complexity 1 21 0 2513 56 0 3 chr6 12654466 12654769 -169760473 + AluY SINE Alu 1 302 -9 368 262 57 8 chr6 12655037 12655159 -169760083 - L1MC4 LINE L1 -1236 6806 6679 303 28 0 0 chr6 12655164 12655200 -169760042 + (TA)n Simple_repeat Simple_repeat 2 37 0 320 338 81 25 chr6 12655432 12655630 -169759612 - L1MC4a LINE L1 -1536 6272 6064 27 29 0 0 chr6 12655750 12655784 -169759458 + AT_rich Low_complexity Low_complexity 1 34 0 357 363 93 10 chr6 12656674 12656878 -169758364 - MIR SINE MIR -1 261 41 22 0 0 0 chr6 12657350 12657372 -169757870 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr6 12657388 12657415 -169757827 + (TG)n Simple_repeat Simple_repeat 2 28 0 338 265 99 20 chr6 12658462 12658613 -169756629 - L1ME4a LINE L1 -24 6097 5935 423 251 60 27 chr6 12658645 12658828 -169756414 - L1ME4a LINE L1 -158 5963 5775 259 338 13 0 chr6 12659145 12659222 -169756020 - L2 LINE L2 -53 3219 3142 2238 88 3 0 chr6 12659364 12659649 -169755593 + AluSc SINE Alu 10 295 -14 238 225 100 50 chr6 12660487 12660607 -169754635 - L1MC4 LINE L1 -24 8018 7893 230 248 107 39 chr6 12660629 12660835 -169754407 - L1 LINE L1 -1805 4341 4122 1291 173 0 18 chr6 12660993 12661219 -169754023 - AluJb SINE Alu -6 306 85 23 0 0 0 chr6 12661941 12661964 -169753278 + AT_rich Low_complexity Low_complexity 1 23 0 205 339 0 0 chr6 12662052 12662111 -169753131 + MIR SINE MIR 204 262 0 210 174 0 0 chr6 12662988 12663034 -169752208 + (TATG)n Simple_repeat Simple_repeat 2 47 0 991 107 0 21 chr6 12663108 12663248 -169751994 - AluSp/q SINE Alu -10 303 167 1143 113 0 0 chr6 12663350 12663500 -169751742 - AluSq/x SINE Alu -163 150 1 198 269 60 30 chr6 12663981 12664048 -169751194 + L2 LINE L2 3200 3268 -4 21 36 0 0 chr6 12666612 12666640 -169748602 + AT_rich Low_complexity Low_complexity 1 28 0 571 301 42 14 chr6 12666748 12666964 -169748278 - MIR SINE MIR 0 262 41 282 248 142 0 chr6 12667011 12667124 -169748118 + MIR SINE MIR 3 131 -131 971 228 19 5 chr6 12667372 12667587 -169747655 - MER20 DNA MER1_type 0 219 2 265 243 155 10 chr6 12669703 12669806 -169745436 + MIR SINE MIR 32 149 -113 375 23 0 0 chr6 12669832 12669876 -169745366 + (TG)n Simple_repeat Simple_repeat 1 44 0 22 35 0 0 chr6 12670854 12670883 -169744359 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 12671257 12671286 -169743956 + GC_rich Low_complexity Low_complexity 1 29 0 219 88 0 0 chr6 12671616 12671650 -169743592 + (TTAGGG)n Simple_repeat Simple_repeat 5 38 0 2200 115 3 0 chr6 12672588 12672884 -169742358 - AluSq SINE Alu -16 297 1 220 229 0 60 chr6 12673093 12673176 -169742066 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 6341 126 53 30 chr6 12673530 12673982 -169741260 - Tigger3b DNA MER2_type -1798 1230 790 2139 20 0 0 chr6 12673982 12674230 -169741012 + L1PA3 LINE L1 5908 6155 0 6341 126 53 30 chr6 12674230 12674900 -169740342 - Tigger3b DNA MER2_type -2238 790 82 923 94 0 16 chr6 12674900 12675027 -169740215 + AluSq/x SINE Alu 1 125 -187 485 233 0 0 chr6 12675027 12675117 -169740125 - Tigger3b DNA MER2_type -1141 90 1 316 239 128 26 chr6 12676343 12676460 -169738782 - L1ME LINE L1 -4462 1799 1671 428 229 115 23 chr6 12676485 12676673 -169738569 - MER58C DNA MER1_type -2 213 1 490 262 79 6 chr6 12676683 12676847 -169738395 - L1ME LINE L1 -4638 1623 1448 208 322 0 0 chr6 12676866 12676925 -169738317 + C-rich Low_complexity Low_complexity 4 62 0 630 256 143 32 chr6 12676940 12677601 -169737641 - L1ME LINE L1 -4841 1239 526 484 284 121 57 chr6 12677822 12678245 -169736997 - L1ME LINE L1 -5618 452 3 234 150 0 0 chr6 12679114 12679154 -169736088 + (TG)n Simple_repeat Simple_repeat 2 41 0 832 265 37 58 chr6 12680136 12680600 -169734642 - L1MC5 LINE L1 -76 7885 7432 1372 195 67 49 chr6 12680897 12681286 -169733956 - MSTD LTR MaLR 0 396 1 324 312 64 0 chr6 12683081 12683206 -169732036 - L1MC4 LINE L1 -1303 6739 6607 189 171 0 0 chr6 12683424 12683459 -169731783 + (TG)n Simple_repeat Simple_repeat 1 35 0 430 216 216 22 chr6 12684135 12684269 -169730973 - MER5B DNA MER1_type 0 178 19 564 203 164 22 chr6 12684272 12684428 -169730814 + LTR37A LTR ERV1 96 297 -129 414 0 0 0 chr6 12684428 12684474 -169730768 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 564 203 164 22 chr6 12684474 12684549 -169730693 + LTR37A LTR ERV1 297 360 -66 205 279 25 63 chr6 12686655 12686734 -169728508 - MER5A DNA MER1_type -24 165 90 263 222 0 0 chr6 12686755 12686809 -169728433 - L1ME LINE L1 -308 5796 5743 254 180 20 0 chr6 12686815 12686865 -169728377 - L2 LINE L2 0 3313 3263 207 270 100 40 chr6 12687041 12687141 -169728101 + L2 LINE L2 2191 2296 -1018 278 258 56 34 chr6 12687714 12687892 -169727350 - L1ME LINE L1 -246 5875 5694 255 260 42 10 chr6 12688657 12688753 -169726489 - L1ME LINE L1 -2689 3457 3359 21 0 0 0 chr6 12693642 12693663 -169721579 + AT_rich Low_complexity Low_complexity 1 21 0 254 345 0 0 chr6 12694136 12694223 -169721019 + L1MC/D LINE L1 5732 5818 -1990 216 0 0 0 chr6 12695230 12695254 -169719988 + (T)n Simple_repeat Simple_repeat 1 24 0 873 266 86 89 chr6 12696049 12696966 -169718276 - L1ME LINE L1 -975 5154 4216 672 288 143 32 chr6 12696968 12698167 -169717075 - L1ME LINE L1 -1924 4205 2874 22 0 0 0 chr6 12698863 12698885 -169716357 + AT_rich Low_complexity Low_complexity 1 22 0 37 62 0 0 chr6 12699212 12699277 -169715965 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr6 12699324 12699345 -169715897 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 12699781 12699804 -169715438 + AT_rich Low_complexity Low_complexity 1 23 0 615 192 0 77 chr6 12700733 12700889 -169714353 - MER104 DNA Tc2 -1 179 36 2550 0 50 0 chr6 12701881 12702163 -169713079 - AluYa8 SINE Alu -14 296 1 283 306 12 24 chr6 12702358 12702443 -169712799 + L2 LINE L2 3228 3311 -2 273 167 67 17 chr6 12703009 12703069 -169712173 + MER63 DNA MER1_type 686 748 -88 1489 126 0 13 chr6 12703433 12703663 -169711579 + MER46A DNA MER2_type 1 227 -9 2719 226 36 12 chr6 12704208 12705129 -169710113 + L1M4c LINE L1 2119 3066 -3316 22 103 0 0 chr6 12705636 12705714 -169709528 + AT_rich Low_complexity Low_complexity 1 78 0 297 135 0 0 chr6 12705882 12705934 -169709308 + (TAA)n Simple_repeat Simple_repeat 1 52 0 512 276 122 6 chr6 12705948 12706129 -169709113 - MIR SINE MIR -33 229 28 25 31 0 0 chr6 12706456 12706488 -169708754 + AT_rich Low_complexity Low_complexity 1 32 0 228 320 32 0 chr6 12706537 12706662 -169708580 - L1ME LINE L1 -4527 1602 1474 321 271 34 34 chr6 12706779 12706986 -169708256 - L1ME LINE L1 -4933 1377 1171 611 323 107 42 chr6 12707015 12707123 -169708119 - L1ME LINE L1 -5004 1115 1015 1312 191 58 65 chr6 12707123 12707432 -169707810 - AluJo SINE Alu -4 308 2 611 323 107 42 chr6 12707432 12707875 -169707367 - L1ME LINE L1 -5104 1015 528 327 311 0 0 chr6 12708681 12708771 -169706471 - L1MC4 LINE L1 -1339 6703 6614 357 361 94 18 chr6 12708996 12709506 -169705736 - L1M4 LINE L1 -1545 4601 4053 604 216 27 2 chr6 12709591 12709757 -169705485 - L1MEc LINE L1 -3221 3720 3553 1612 157 17 58 chr6 12709820 12710164 -169705078 - Tigger1 DNA MER2_type -3 2415 2086 1497 86 5 5 chr6 12710164 12710385 -169704857 - pTR5 LTR ERV1 -2046 392 172 365 194 32 0 chr6 12710392 12710485 -169704757 - LTR30 LTR ERV1 -83 639 544 5476 113 48 62 chr6 12710485 12711662 -169703580 - pTR5 LTR ERV1 -413 2025 732 2379 65 0 43 chr6 12711667 12711990 -169703252 - AluY SINE Alu -2 309 1 12675 123 16 4 chr6 12711990 12714030 -169701212 - Tigger1 DNA MER2_type -331 2087 24 1370 258 112 25 chr6 12714036 12714601 -169700641 - MLT1E2 LTR MaLR 0 626 13 780 218 153 41 chr6 12714648 12715061 -169700181 - L1MEc LINE L1 -4537 2585 2127 205 254 0 17 chr6 12715061 12715120 -169700122 + CT-rich Low_complexity Low_complexity 2 59 0 388 228 48 55 chr6 12715137 12715282 -169699960 - L1MEc LINE L1 -4880 1959 1816 302 267 228 6 chr6 12715665 12715845 -169699397 - L1MEc LINE L1 -5847 576 357 329 284 72 36 chr6 12715918 12716260 -169698982 - L2 LINE L2 -211 3102 2751 33 56 0 0 chr6 12716626 12716680 -169698562 + AT_rich Low_complexity Low_complexity 1 54 0 277 346 97 51 chr6 12716680 12717307 -169697935 + L2 LINE L2 1614 2269 -1045 341 303 120 0 chr6 12717332 12717474 -169697768 - L1ME4a LINE L1 -243 5878 5720 249 33 0 0 chr6 12718045 12718075 -169697167 + (T)n Simple_repeat Simple_repeat 1 30 0 256 242 66 0 chr6 12720186 12720277 -169694965 + HAL1b LINE L1 991 1087 -261 241 245 47 28 chr6 12721801 12721907 -169693335 - LTR31 LTR ERV1 -8 611 504 2023 116 14 20 chr6 12729709 12730002 -169685240 - AluSx SINE Alu -20 292 2 23 0 0 0 chr6 12730005 12730028 -169685214 + AT_rich Low_complexity Low_complexity 1 23 0 199 283 217 22 chr6 12730186 12730278 -169684964 + MER5A DNA MER1_type 35 144 -45 303 336 81 53 chr6 12730364 12730724 -169684518 - L2 LINE L2 -1025 2289 1920 1635 183 14 3 chr6 12731771 12732056 -169683186 + AluJo SINE Alu 1 288 -24 345 258 93 60 chr6 12732136 12732287 -169682955 + L3b LINE CR1 1224 1379 -204 961 163 12 0 chr6 12733239 12733399 -169681843 + FRAM SINE Alu 6 167 -9 33 0 0 0 chr6 12733984 12734017 -169681225 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr6 12734622 12734648 -169680594 + (A)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr6 12736259 12736280 -169678962 + AT_rich Low_complexity Low_complexity 1 21 0 2021 109 31 3 chr6 12736543 12736836 -169678406 + AluSq SINE Alu 1 301 -12 215 207 35 17 chr6 12737135 12737193 -169678049 - MIR3 SINE MIR -7 201 143 420 274 57 33 chr6 12738116 12738415 -169676827 + L1MEd LINE L1 592 897 -5222 204 371 64 48 chr6 12738791 12739104 -169676138 + L2 LINE L2 2553 2870 -444 214 274 41 14 chr6 12739209 12739282 -169675960 + L2 LINE L2 2985 3059 -213 2091 245 131 22 chr6 12741371 12742195 -169673047 + L2 LINE L2 2058 2971 -343 36484 80 8 11 chr6 12742211 12748374 -169666868 + L1PA6 LINE L1 11 6154 0 698 246 76 101 chr6 12748376 12748733 -169666509 + L2 LINE L2 2962 3309 -4 2285 107 0 0 chr6 12749003 12749293 -169665949 + AluSp SINE Alu 1 290 -23 198 348 43 0 chr6 12749540 12749609 -169665633 - L3b LINE CR1 -90 1493 1422 23 33 0 0 chr6 12753615 12753645 -169661597 + AT_rich Low_complexity Low_complexity 1 30 0 1066 231 14 5 chr6 12754500 12754721 -169660521 - MER58A DNA MER1_type -1 223 1 2189 90 0 27 chr6 12754735 12755036 -169660206 + AluSx SINE Alu 20 312 0 23 0 0 0 chr6 12755874 12755897 -169659345 + AT_rich Low_complexity Low_complexity 1 23 0 204 291 0 18 chr6 12756149 12756204 -169659038 + MIR SINE MIR 32 85 -177 198 0 0 0 chr6 12756414 12756436 -169658806 + (A)n Simple_repeat Simple_repeat 1 22 0 1715 110 0 0 chr6 12756708 12756935 -169658307 + AluSq SINE Alu 1 227 -86 1137 244 79 35 chr6 12756949 12757432 -169657810 - L1MC4a LINE L1 -19 6147 6075 1485 75 4 57 chr6 12757438 12757665 -169657577 + L1PA8 LINE L1 5948 6162 -10 2815 258 76 19 chr6 12757694 12758094 -169657148 - L1MCc LINE L1 -2848 4093 3717 5936 96 43 2 chr6 12758094 12759458 -169655784 - L1PA11 LINE L1 -1 6173 4768 2815 258 76 19 chr6 12759458 12760765 -169654477 - L1MCc LINE L1 -3224 3717 2306 1491 231 81 27 chr6 12760781 12761503 -169653739 - L1MCc LINE L1 -4851 1571 815 186 263 0 0 chr6 12762029 12762086 -169653156 + (TG)n Simple_repeat Simple_repeat 2 58 0 1298 167 82 31 chr6 12763484 12763777 -169651465 - LTR56 LTR ERV1 -137 308 1 25 75 0 0 chr6 12765027 12765080 -169650162 + AT_rich Low_complexity Low_complexity 1 53 0 200 86 29 0 chr6 12770369 12770404 -169644838 + (TA)n Simple_repeat Simple_repeat 2 37 0 411 152 54 0 chr6 12770415 12770527 -169644715 + (TA)n Simple_repeat Simple_repeat 1 118 0 305 181 121 24 chr6 12770527 12770610 -169644632 + L1MC4 LINE L1 6612 6702 -1340 213 255 31 0 chr6 12770626 12770724 -169644518 + (TA)n Simple_repeat Simple_repeat 1 101 0 244 221 81 12 chr6 12770726 12770812 -169644430 - L1MC4 LINE L1 -1339 6703 6612 472 149 21 0 chr6 12770812 12770906 -169644336 + (TA)n Simple_repeat Simple_repeat 1 96 0 277 186 35 12 chr6 12770907 12770993 -169644249 - L1MC4 LINE L1 -1341 6701 6614 234 179 0 63 chr6 12771024 12771119 -169644123 - L1MC4 LINE L1 -1339 6703 6615 317 242 0 53 chr6 12771141 12771236 -169644006 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr6 12771236 12771259 -169643983 + AT_rich Low_complexity Low_complexity 1 23 0 1652 158 50 136 chr6 12771356 12771729 -169643513 + MER47B DNA MER2_type 1 329 -1994 2075 131 10 0 chr6 12771729 12772027 -169643215 - AluSx SINE Alu -9 303 3 1652 158 50 136 chr6 12772027 12772110 -169643132 + MER47B DNA MER2_type 329 418 0 290 318 45 23 chr6 12772653 12772702 -169642540 - L2 LINE L2 -7 3306 3260 2126 94 0 4 chr6 12772702 12772979 -169642263 + AluY SINE Alu 22 297 -14 290 318 45 23 chr6 12772979 12773061 -169642181 - L2 LINE L2 -53 3260 3172 182 333 0 18 chr6 12773318 12773375 -169641867 - MIR SINE MIR -58 150 95 184 279 74 41 chr6 12773840 12773962 -169641280 + L3 LINE CR1 740 865 -712 851 157 7 0 chr6 12774054 12774194 -169641048 - FLAM_C SINE Alu -2 141 1 189 270 29 31 chr6 12775557 12775631 -169639611 - MIR SINE MIR -100 108 46 26 30 0 0 chr6 12777147 12777180 -169638062 + AT_rich Low_complexity Low_complexity 1 33 0 192 125 0 0 chr6 12777636 12777668 -169637574 + (TTG)n Simple_repeat Simple_repeat 2 33 0 456 282 67 0 chr6 12778155 12778304 -169636938 + MIR SINE MIR 96 254 -8 209 233 0 0 chr6 12778362 12778405 -169636837 - L2 LINE L2 -3 3310 3268 2182 111 7 0 chr6 12779076 12779374 -169635868 - AluSq SINE Alu -13 300 1 1083 116 40 0 chr6 12779522 12779720 -169635522 - L1P LINE L1 -837 5309 5104 3262 86 0 7 chr6 12779720 12780173 -169635069 + L1PA14 LINE L1 5710 6159 -2 633 309 39 17 chr6 12780198 12780428 -169634814 + MIR SINE MIR 10 244 -18 21 71 0 0 chr6 12780720 12780762 -169634480 + AT_rich Low_complexity Low_complexity 1 42 0 377 323 86 23 chr6 12780833 12781136 -169634106 + L1MC4a LINE L1 5009 5330 -816 801 164 0 0 chr6 12781151 12781273 -169633969 + FLAM_C SINE Alu 3 124 -19 545 337 86 27 chr6 12781288 12781837 -169633405 + L1MC4a LINE L1 5328 5908 -1900 206 73 98 0 chr6 12782673 12782714 -169632528 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 446 275 106 0 chr6 12782912 12783054 -169632188 - MIR SINE MIR -19 243 87 2357 74 0 0 chr6 12783921 12784240 -169631002 + AluY SINE Alu 1 319 0 948 115 0 121 chr6 12784242 12784416 -169630826 - FRAM SINE Alu -22 154 2 594 103 0 0 chr6 12786817 12786904 -169628338 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 22 0 0 0 chr6 12787709 12787731 -169627511 + AT_rich Low_complexity Low_complexity 1 22 0 335 330 57 32 chr6 12787931 12788246 -169626996 + L1MC4a LINE L1 426 748 -5973 2021 229 15 23 chr6 12788419 12788938 -169626304 + L1ME LINE L1 5283 5797 -369 908 231 61 60 chr6 12788950 12789389 -169625853 + L1ME1 LINE L1 5711 6112 -54 777 252 101 64 chr6 12789440 12790062 -169625180 + L1MC4a LINE L1 1004 1648 -5073 2113 157 35 39 chr6 12790074 12790436 -169624806 + MSTB1 LTR MaLR 1 362 -70 1985 140 24 0 chr6 12790436 12790728 -169624514 - AluSx SINE Alu -13 299 1 2113 157 35 39 chr6 12790728 12790797 -169624445 + MSTB1 LTR MaLR 362 430 -2 238 282 78 10 chr6 12790859 12790962 -169624280 + L1MC4a LINE L1 1860 1969 -4571 323 355 37 11 chr6 12790964 12791153 -169624089 + L1MC4a LINE L1 4109 4302 -2238 487 317 53 43 chr6 12791436 12791758 -169623484 + L1MC4a LINE L1 4777 5101 -1439 29 28 0 0 chr6 12792029 12792065 -169623177 + AT_rich Low_complexity Low_complexity 1 36 0 904 291 73 42 chr6 12792267 12792809 -169622433 + L1MC4a LINE L1 5681 6246 -1956 204 40 0 0 chr6 12792809 12792834 -169622408 + (TTGTG)n Simple_repeat Simple_repeat 3 27 0 904 291 73 42 chr6 12792834 12792906 -169622336 + L1MC4a LINE L1 6246 6314 -1888 471 300 106 51 chr6 12793147 12793691 -169621551 + L2 LINE L2 2737 3313 0 1952 148 3 13 chr6 12794150 12794460 -169620782 + AluJo SINE Alu 1 307 -5 23 54 0 0 chr6 12794467 12794504 -169620738 + AT_rich Low_complexity Low_complexity 1 37 0 433 296 86 26 chr6 12794703 12794855 -169620387 - MIR3 SINE MIR -6 202 42 853 95 107 48 chr6 12795144 12795280 -169619962 - L1MA4A LINE L1 -6 6297 6148 2152 118 137 11 chr6 12795280 12795660 -169619582 + MSTA LTR MaLR 1 428 0 853 95 107 48 chr6 12795660 12795691 -169619551 - L1MA4A LINE L1 -155 6148 6120 514 185 120 0 chr6 12795801 12795909 -169619333 + MIR SINE MIR 66 186 -76 351 157 0 39 chr6 12795909 12795986 -169619256 - Alu SINE Alu -251 51 1 698 317 52 20 chr6 12796069 12796476 -169618766 - L1ME LINE L1 -331 5790 5371 979 186 61 8 chr6 12796847 12797110 -169618132 + MER33 DNA MER1_type 26 302 -22 207 0 0 0 chr6 12797204 12797227 -169618015 + (GA)n Simple_repeat Simple_repeat 2 24 0 2307 95 0 3 chr6 12797361 12797667 -169617575 + AluSx SINE Alu 1 305 -7 493 258 32 24 chr6 12798056 12798180 -169617062 + L2 LINE L2 3188 3312 -1 424 244 122 24 chr6 12798335 12798499 -169616743 - MIR SINE MIR -25 237 58 207 306 111 37 chr6 12798531 12798639 -169616603 + L3 LINE CR1 308 423 -1154 443 317 181 5 chr6 12798798 12799019 -169616223 + L3 LINE CR1 413 672 -905 283 304 34 47 chr6 12799720 12799868 -169615374 - L2 LINE L2 -2 3311 3166 2249 97 19 10 chr6 12800118 12800427 -169614815 + AluSx SINE Alu 1 312 0 425 310 111 74 chr6 12800439 12801151 -169614091 - L2 LINE L2 -448 2866 2129 183 80 0 0 chr6 12801304 12801329 -169613913 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 667 274 62 46 chr6 12801364 12801623 -169613619 - L2 LINE L2 -90 3223 2961 755 105 105 15 chr6 12801625 12801758 -169613484 - MLT2D LTR ERVL -269 145 1 496 287 14 7 chr6 12801758 12801901 -169613341 - L2 LINE L2 -654 2660 2517 370 83 0 0 chr6 12802123 12802171 -169613071 + MSTA LTR MaLR 378 425 -3 2110 110 7 0 chr6 12802203 12802493 -169612749 - AluSp SINE Alu -12 301 10 2354 162 58 9 chr6 12802918 12803381 -169611861 + MER66B LTR ERV1 1 486 0 1855 159 0 0 chr6 12804037 12804313 -169610929 + AluJb SINE Alu 1 276 -36 243 0 0 0 chr6 12804318 12804345 -169610897 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr6 12804988 12805010 -169610232 + AT_rich Low_complexity Low_complexity 1 22 0 1748 135 69 10 chr6 12804992 12805281 -169609961 - AluJb SINE Alu -6 306 1 2329 97 3 0 chr6 12806637 12806936 -169608306 + AluSq SINE Alu 1 300 -13 208 288 0 17 chr6 12807136 12807195 -169608047 + L2 LINE L2 3190 3247 -25 203 250 21 0 chr6 12807197 12807245 -169607997 + CT-rich Low_complexity Low_complexity 1 49 0 217 225 70 14 chr6 12807247 12807318 -169607924 - L2 LINE L2 -5 3267 3193 310 208 146 21 chr6 12807505 12807601 -169607641 - L2 LINE L2 0 3313 3206 703 257 100 16 chr6 12807778 12808031 -169607211 - L2 LINE L2 -317 2996 2728 2498 64 0 0 chr6 12808032 12808327 -169606915 + AluY SINE Alu 1 295 -16 480 316 121 0 chr6 12808356 12808546 -169606696 + MIR SINE MIR 1 213 -49 222 344 33 22 chr6 12808629 12808719 -169606523 - MIR SINE MIR -155 107 17 1730 183 83 74 chr6 12808795 12808966 -169606276 + MLT1C LTR MaLR 1 169 -298 2156 124 0 3 chr6 12808966 12809273 -169605969 - AluSx SINE Alu -2 310 5 1730 183 83 74 chr6 12809273 12809559 -169605683 + MLT1C LTR MaLR 169 462 -5 1421 170 90 7 chr6 12810464 12810585 -169604657 + AluJo SINE Alu 1 111 -201 216 0 0 0 chr6 12810585 12810609 -169604633 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1421 170 90 7 chr6 12810609 12810764 -169604478 + AluJo SINE Alu 111 300 -12 2048 184 23 10 chr6 12811358 12811743 -169603499 + MLT1B LTR MaLR 1 390 0 1066 281 97 60 chr6 12811794 12812053 -169603189 + L2 LINE L2 2840 3125 -188 1927 76 0 0 chr6 12812053 12812289 -169602953 + AluY SINE Alu 60 295 -16 1066 281 97 60 chr6 12812289 12812481 -169602761 + L2 LINE L2 3125 3308 -5 241 227 136 0 chr6 12812500 12812566 -169602676 - MIR SINE MIR -1 261 187 1009 132 92 0 chr6 12812811 12812963 -169602279 + AluSg/x SINE Alu 135 300 -12 2724 32 0 3 chr6 12813960 12814270 -169600972 + AluY SINE Alu 1 309 -2 186 43 0 0 chr6 12814307 12814330 -169600912 + (TA)n Simple_repeat Simple_repeat 1 23 0 241 217 24 48 chr6 12814362 12814445 -169600797 - L1MC4 LINE L1 -1341 6701 6621 350 247 13 52 chr6 12814468 12814622 -169600620 - HAL1b LINE L1 -7 1341 1194 526 318 50 0 chr6 12814834 12815035 -169600207 - Charlie8 DNA MER1_type -2152 265 55 1842 154 7 7 chr6 12815035 12815333 -169599909 + AluJo SINE Alu 9 306 -6 204 227 0 0 chr6 12815380 12815424 -169599818 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 582 187 87 124 chr6 12815524 12815616 -169599626 - HAL1b LINE L1 -191 1157 1063 2311 107 0 3 chr6 12815616 12815924 -169599318 + AluSc SINE Alu 1 307 -2 582 187 87 124 chr6 12815924 12816130 -169599112 - HAL1b LINE L1 -285 1063 870 1933 131 34 10 chr6 12816404 12816702 -169598540 + AluJo SINE Alu 1 305 -7 265 219 109 0 chr6 12817042 12817106 -169598136 - MIR3 SINE MIR -27 181 111 2080 110 73 51 chr6 12817409 12817765 -169597477 - THE1B LTR MaLR 0 364 1 2008 157 7 0 chr6 12817851 12818151 -169597091 - AluJb SINE Alu -10 302 1 24 53 0 0 chr6 12818257 12818295 -169596947 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr6 12818365 12818388 -169596854 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2241 64 0 18 chr6 12818520 12818800 -169596442 + AluY SINE Alu 28 302 -9 240 59 0 0 chr6 12818920 12818954 -169596288 + (TG)n Simple_repeat Simple_repeat 1 34 0 541 318 106 0 chr6 12819132 12819377 -169595865 + L2 LINE L2 687 957 -2357 585 262 54 47 chr6 12819631 12819929 -169595313 - L1ME3A LINE L1 -219 5951 5652 2657 259 132 68 chr6 12820005 12821606 -169593636 + L2 LINE L2 964 2666 -648 1352 230 104 211 chr6 12821662 12821735 -169593507 - L1ME3 LINE L1 -4 6158 6079 1743 156 20 89 chr6 12821735 12821805 -169593437 + MLT1A1 LTR MaLR 1 74 -291 2220 120 0 0 chr6 12821805 12822106 -169593136 - AluSx SINE Alu -11 301 1 1743 156 20 89 chr6 12822106 12822427 -169592815 + MLT1A1 LTR MaLR 74 365 0 1352 230 104 211 chr6 12822427 12822881 -169592361 - L1ME3 LINE L1 -83 6079 5578 832 165 0 8 chr6 12822881 12823014 -169592228 - FLAM_C SINE Alu -1 132 1 1352 230 104 211 chr6 12823014 12823072 -169592170 - L1ME3 LINE L1 -584 5578 5515 1507 144 20 111 chr6 12823072 12823413 -169591829 + AluYb8 SINE Alu 1 310 -8 1352 230 104 211 chr6 12823413 12823577 -169591665 - L1ME3 LINE L1 -647 5515 5438 747 296 103 40 chr6 12823647 12824072 -169591170 + L2 LINE L2 2848 3299 -14 269 241 12 24 chr6 12824146 12824229 -169591013 + CT-rich Low_complexity Low_complexity 4 85 0 1638 165 26 0 chr6 12824374 12824640 -169590602 + AluJb SINE Alu 4 276 -36 251 291 311 0 chr6 12827564 12827667 -169587575 + L2 LINE L2 3138 3272 0 1823 161 3 40 chr6 12828392 12828716 -169586526 - AluJo SINE Alu 0 312 1 773 124 23 16 chr6 12829362 12829491 -169585751 - L1MA7 LINE L1 -130 6161 6032 763 150 22 83 chr6 12829485 12829624 -169585618 + L1MA7 LINE L1 6123 6250 -41 * 2154 107 3 13 chr6 12829624 12829932 -169585310 - AluSg SINE Alu -5 305 1 763 150 22 83 chr6 12829932 12829972 -169585270 + L1MA7 LINE L1 6250 6291 0 2184 112 3 7 chr6 12830813 12831108 -169584134 - AluSx SINE Alu -18 294 1 284 336 29 36 chr6 12831127 12831267 -169583975 + L2 LINE L2 3134 3272 0 325 300 53 41 chr6 12831305 12831475 -169583767 - L2 LINE L2 -202 3070 2899 409 230 7 82 chr6 12831874 12832009 -169583233 - L2 LINE L2 -5 3267 3143 327 219 115 31 chr6 12832079 12832175 -169583067 - MIR SINE MIR -86 176 73 216 86 0 0 chr6 12832304 12832339 -169582903 + (CA)n Simple_repeat Simple_repeat 2 36 0 194 312 46 9 chr6 12832834 12832943 -169582299 - L3b LINE CR1 -350 1233 1121 3450 191 40 8 chr6 12833052 12833675 -169581567 + MER82 DNA MER2_type 11 653 0 25 31 0 0 chr6 12833918 12833950 -169581292 + AT_rich Low_complexity Low_complexity 1 32 0 40 0 0 0 chr6 12834929 12834969 -169580273 + AT_rich Low_complexity Low_complexity 1 40 0 365 137 29 29 chr6 12834969 12835108 -169580134 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 273 299 118 76 chr6 12836190 12836334 -169578908 - MIR3 SINE MIR -8 200 51 270 286 104 39 chr6 12837276 12837458 -169577784 - MIR SINE MIR -67 195 2 346 196 134 10 chr6 12837937 12838034 -169577208 + MIR3 SINE MIR 48 156 -52 998 168 100 0 chr6 12838529 12838719 -169576523 + MER3 DNA MER1_type 1 209 0 1727 132 88 7 chr6 12839130 12839402 -169575840 - AluSx SINE Alu -18 294 1 3743 47 2 11 chr6 12839666 12840117 -169575125 - L1PA5 LINE L1 0 6154 5708 2227 100 3 10 chr6 12840733 12841033 -169574209 + AluSx SINE Alu 4 301 -11 824 328 31 22 chr6 12842141 12842461 -169572781 + MLT1J LTR MaLR 10 332 -179 1787 161 55 0 chr6 12842469 12842760 -169572482 + AluJo SINE Alu 1 307 -5 785 281 136 13 chr6 12843632 12843942 -169571300 + MLT1J LTR MaLR 159 506 -5 2085 94 3 21 chr6 12843997 12844285 -169570957 - AluSx SINE Alu -1 311 29 682 244 19 6 chr6 12845227 12845387 -169569855 + MIR SINE MIR 20 181 -81 186 323 202 0 chr6 12845570 12845669 -169569573 + L2 LINE L2 2851 2969 -303 2552 132 62 7 chr6 12845808 12846130 -169569112 - Tigger2 DNA MER2_type 0 2718 2366 397 0 38 0 chr6 12846130 12846183 -169569059 + (GGA)n Simple_repeat Simple_repeat 2 56 0 2552 132 62 7 chr6 12846183 12846278 -169568964 - Tigger2 DNA MER2_type -352 2366 2278 404 179 15 0 chr6 12846274 12846341 -169568901 - Tigger2 DNA MER2_type -2650 68 1 * 589 200 48 61 chr6 12846851 12847081 -169568161 - Charlie1a DNA MER1_type 0 1455 1229 1940 197 44 19 chr6 12847082 12847514 -169567728 - Charlie1a DNA MER1_type -590 865 423 797 184 21 14 chr6 12847540 12847681 -169567561 - Charlie1a DNA MER1_type -1313 142 1 223 291 101 42 chr6 12848020 12848187 -169567055 - MIR SINE MIR -46 216 40 301 258 0 0 chr6 12849798 12849860 -169565382 + L2 LINE L2 3250 3311 -2 2191 126 7 0 chr6 12850371 12850681 -169564561 - AluSx SINE Alu 0 312 1 561 239 112 30 chr6 12850710 12850894 -169564348 + MLT1A2 LTR MaLR 3 190 -184 710 192 23 57 chr6 12851079 12851256 -169563986 + MLT1A2 LTR MaLR 204 374 0 370 250 214 0 chr6 12851906 12852050 -169563192 - MER5A DNA MER1_type -6 183 4 534 189 78 46 chr6 12854748 12854901 -169560341 + LTR45B LTR ERV1 332 489 0 204 125 0 0 chr6 12855733 12855765 -169559477 + (GAA)n Simple_repeat Simple_repeat 1 32 0 408 232 22 111 chr6 12856115 12856296 -169558946 - L2 LINE L2 -2 3311 3147 419 334 109 62 chr6 12856555 12857371 -169557871 + L2 LINE L2 2334 3185 -87 227 309 44 34 chr6 12857941 12858145 -169557097 + L1ME LINE L1 3628 3833 -2313 226 295 13 0 chr6 12858597 12858675 -169556567 - MER116 DNA Mariner -1 79 1 1797 149 9 35 chr6 12858907 12859223 -169556019 + AluJo SINE Alu 1 308 -4 1748 167 20 7 chr6 12861014 12861314 -169553928 + AluJb SINE Alu 1 304 -8 341 312 112 54 chr6 12861976 12862592 -169552650 + L1ME LINE L1 4089 4847 -1299 181 288 51 0 chr6 12862704 12862763 -169552479 + L2 LINE L2 3251 3312 -1 226 318 143 32 chr6 12863182 12863559 -169551683 - HAL1 LINE L1 -53 2454 2036 729 264 60 0 chr6 12863736 12864001 -169551241 + L1ME LINE L1 5501 5781 -340 194 340 55 74 chr6 12864457 12864713 -169550529 - L2 LINE L2 -2845 469 219 2277 123 0 0 chr6 12865432 12865734 -169549508 + AluSq SINE Alu 1 302 -11 205 283 85 38 chr6 12867073 12867179 -169548063 + MIR SINE MIR 14 124 -138 1555 96 50 0 chr6 12867360 12867579 -169547663 + MER30 DNA MER1_type 1 230 0 1728 183 15 66 chr6 12868130 12868541 -169546701 + MLT1B LTR MaLR 1 390 0 448 301 72 80 chr6 12869314 12869663 -169545579 - L2 LINE L2 -62 3210 2865 1581 122 8 0 chr6 12869905 12870159 -169545083 + Tigger1 DNA MER2_type 1 256 -2162 417 71 0 0 chr6 12870170 12870226 -169545016 + Tigger1 DNA MER2_type 1415 1470 -948 * 6167 106 18 1 chr6 12870225 12871165 -169544077 + Tigger1 DNA MER2_type 617 1572 -846 12264 177 30 11 chr6 12871170 12873832 -169541410 - L1 LINE L1 -1000 6565 3851 1765 264 48 19 chr6 12873835 12874815 -169540427 - L1 LINE L1 -3814 3751 2740 2119 124 0 29 chr6 12875295 12875609 -169539633 - AluSq SINE Alu -8 305 1 429 300 83 83 chr6 12875818 12876181 -169539061 - L2 LINE L2 -47 3225 2863 198 0 0 0 chr6 12876447 12876469 -169538773 + (T)n Simple_repeat Simple_repeat 1 22 0 399 210 121 57 chr6 12877365 12877489 -169537753 + L2 LINE L2 3182 3313 0 301 272 99 0 chr6 12877559 12877672 -169537570 - MIR SINE MIR -50 158 34 540 83 31 10 chr6 12877771 12877867 -169537375 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 28 86 0 0 chr6 12878381 12878451 -169536791 + AT_rich Low_complexity Low_complexity 1 70 0 243 0 0 0 chr6 12878645 12878672 -169536570 + (TG)n Simple_repeat Simple_repeat 1 27 0 2550 71 0 0 chr6 12878724 12879033 -169536209 + AluY SINE Alu 2 310 -1 264 355 45 0 chr6 12879226 12879336 -169535906 - L2 LINE L2 -20 3252 3138 245 307 139 7 chr6 12879479 12879616 -169535626 - L2 LINE L2 -219 3053 2899 207 302 125 0 chr6 12880072 12880168 -169535074 - L2 LINE L2 -785 2529 2422 866 243 19 10 chr6 12880174 12880380 -169534862 - MIR SINE MIR 0 262 55 289 329 47 47 chr6 12880360 12880594 -169534648 - L2 LINE L2 -1067 2247 2014 * 2291 93 10 16 chr6 12881452 12881765 -169533477 + AluSx SINE Alu 1 311 -1 219 311 16 33 chr6 12881951 12882073 -169533169 + L2 LINE L2 3126 3245 -68 22 0 0 0 chr6 12883272 12883294 -169531948 + AT_rich Low_complexity Low_complexity 1 22 0 1980 141 7 0 chr6 12883455 12883761 -169531481 + AluSx SINE Alu 1 308 0 204 206 82 55 chr6 12884312 12884385 -169530857 - MIR SINE MIR -96 166 92 261 180 0 0 chr6 12885416 12885466 -169529776 + CT-rich Low_complexity Low_complexity 3 52 0 744 138 69 0 chr6 12887232 12887348 -169527894 + AluJb SINE Alu 161 284 -28 480 35 0 0 chr6 12887348 12887406 -169527836 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 200 122 41 0 chr6 12887406 12887455 -169527787 + GA-rich Low_complexity Low_complexity 3 53 0 1136 75 0 32 chr6 12887455 12887641 -169527601 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 26 88 0 0 chr6 12887917 12887985 -169527257 + AT_rich Low_complexity Low_complexity 1 68 0 2070 107 42 0 chr6 12888413 12888702 -169526540 - AluSp SINE Alu -12 301 1 469 185 66 13 chr6 12888862 12889013 -169526229 - MER113 DNA MER1_type? -361 160 2 1921 142 0 25 chr6 12889674 12889990 -169525252 + AluJo SINE Alu 1 308 -4 402 31 47 0 chr6 12890491 12890555 -169524687 + (TC)n Simple_repeat Simple_repeat 2 68 0 378 0 0 0 chr6 12890555 12890597 -169524645 + (CA)n Simple_repeat Simple_repeat 1 42 0 180 77 0 0 chr6 12890916 12890942 -169524300 + (GGGTG)n Simple_repeat Simple_repeat 4 29 0 348 330 68 0 chr6 12895770 12895873 -169519369 - MIR SINE MIR -57 151 42 180 0 0 0 chr6 12897763 12897783 -169517459 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr6 12898325 12898354 -169516888 + AT_rich Low_complexity Low_complexity 1 29 0 221 268 42 56 chr6 12901107 12901178 -169514064 + MIR SINE MIR 83 152 -56 252 306 35 0 chr6 12901932 12902017 -169513225 - MIR SINE MIR -68 140 53 21 0 0 0 chr6 12902288 12902309 -169512933 + AT_rich Low_complexity Low_complexity 1 21 0 2441 84 3 0 chr6 12902367 12902676 -169512566 - AluSp SINE Alu -3 310 1 191 304 30 67 chr6 12903008 12903143 -169512099 - MIR SINE MIR -83 179 50 23 0 0 0 chr6 12904333 12904356 -169510886 + AT_rich Low_complexity Low_complexity 1 23 0 4018 119 2 5 chr6 12904359 12904970 -169510272 - L1PB3 LINE L1 -1 6153 5545 279 333 56 0 chr6 12905132 12905258 -169509984 + MER94 DNA DNA 2 134 0 217 347 0 14 chr6 12905400 12905472 -169509770 + L2 LINE L2 3202 3272 0 242 259 82 24 chr6 12905849 12905934 -169509308 - L2 LINE L2 -896 2418 2329 2595 128 6 60 chr6 12905946 12906371 -169508871 + MER65A LTR ERV1 1 400 -45 1750 176 14 3 chr6 12906371 12906660 -169508582 - AluJo SINE Alu -20 292 1 2595 128 6 60 chr6 12906660 12906704 -169508538 + MER65A LTR ERV1 400 445 0 494 235 16 43 chr6 12906713 12906900 -169508342 - L1MC5 LINE L1 -55 7906 7725 624 220 83 38 chr6 12907062 12907276 -169507966 - MIR SINE MIR -14 248 13 438 155 0 0 chr6 12908106 12908177 -169507065 - MER92C LTR ERV1 0 554 484 335 235 174 0 chr6 12908322 12908420 -169506822 - MER92B LTR ERV1 -521 115 1 357 196 22 33 chr6 12909265 12909357 -169505885 - LTR37A LTR ERV1 -326 100 10 2320 210 31 76 chr6 12909364 12910399 -169504843 - MER31-int LTR ERV1 -679 5492 3625 343 196 49 29 chr6 12910464 12910566 -169504676 - MER31-int LTR ERV1 -1662 3274 3171 1145 135 162 26 chr6 12910762 12911028 -169504214 - MSTA LTR MaLR 0 428 127 188 341 66 11 chr6 12911179 12911270 -169503972 - MER5B DNA MER1_type -82 96 1 2394 128 5 11 chr6 12911893 12912260 -169502982 + MLT1A1 LTR MaLR 1 365 0 2153 132 0 3 chr6 12912437 12912740 -169502502 - AluSx SINE Alu -10 302 1 338 275 20 40 chr6 12912917 12913117 -169502125 - MER31-int LTR ERV1 -3061 1875 1680 291 259 15 15 chr6 12913258 12913389 -169501853 - MER31-int LTR ERV1 -3493 1443 1313 451 288 4 49 chr6 12913511 12913754 -169501488 - MER31-int LTR ERV1 -3664 1272 1041 570 295 69 6 chr6 12914213 12914386 -169500856 + MIR SINE MIR 3 186 -76 1976 136 4 0 chr6 12914470 12914778 -169500464 - AluJb SINE Alu 0 309 1 360 331 42 14 chr6 12914825 12914967 -169500275 - MER5A DNA MER1_type -6 183 38 2197 93 7 0 chr6 12915017 12915297 -169499945 + AluSc SINE Alu 1 282 -27 510 169 16 33 chr6 12915313 12915496 -169499746 + (TA)n Simple_repeat Simple_repeat 1 180 0 326 309 259 10 chr6 12915616 12915817 -169499425 + L2 LINE L2 3020 3270 -2 310 115 19 0 chr6 12915942 12915994 -169499248 + L1M4 LINE L1 5203 5255 -891 480 238 95 26 chr6 12916533 12916722 -169498520 + L1ME3A LINE L1 5959 6160 -10 239 281 0 0 chr6 12916750 12916807 -169498435 + T-rich Low_complexity Low_complexity 1 57 0 2968 245 70 54 chr6 12918002 12919652 -169495590 - L1ME2 LINE L1 -11 6948 5243 2045 124 0 7 chr6 12919652 12919961 -169495281 + AluSg SINE Alu 2 308 0 2968 245 70 54 chr6 12919961 12920687 -169494555 - L1ME2 LINE L1 -1716 5243 4530 270 219 0 0 chr6 12920688 12920752 -169494490 + (TA)n Simple_repeat Simple_repeat 2 65 0 230 239 0 23 chr6 12920752 12920840 -169494402 - L1MC4 LINE L1 -1339 6703 6618 24 32 0 0 chr6 12920849 12920880 -169494362 + AT_rich Low_complexity Low_complexity 1 31 0 1990 132 6 3 chr6 12920896 12921223 -169494019 - MER46B DNA MER2_type -1 235 33 856 321 47 24 chr6 12921261 12921809 -169493433 - L1ME2 LINE L1 -5004 1419 859 1916 102 0 0 chr6 12923151 12923397 -169491845 - AluSq SINE Alu -16 297 52 235 239 35 115 chr6 12923901 12924014 -169491228 - L1ME2 LINE L1 -5980 443 340 1612 184 38 14 chr6 12924068 12924356 -169490886 + AluJb SINE Alu 1 295 -17 258 283 12 81 chr6 12924457 12924506 -169490736 - L1ME2 LINE L1 -6254 169 118 1622 177 0 34 chr6 12924506 12924827 -169490415 - AluJo SINE Alu 0 311 1 258 283 12 81 chr6 12924827 12924949 -169490293 - L1ME2 LINE L1 -6305 118 9 288 0 0 0 chr6 12924995 12925027 -169490215 + (CA)n Simple_repeat Simple_repeat 2 33 0 1064 231 9 5 chr6 12925096 12925312 -169489930 + MER20 DNA MER1_type 3 219 0 243 0 0 0 chr6 12975617 12975644 -169439598 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 1542 170 60 7 chr6 12978831 12979114 -169436128 - AluJb SINE Alu -14 298 1 328 238 103 8 chr6 12979151 12979277 -169435965 - MIR SINE MIR -6 256 119 693 164 0 0 chr6 12979533 12979643 -169435599 + FLAM_C SINE Alu 2 111 -32 276 100 0 0 chr6 12979649 12979689 -169435553 + (TTA)n Simple_repeat Simple_repeat 2 41 0 515 217 19 0 chr6 12979948 12980054 -169435188 + MER5A DNA MER1_type 2 109 -80 2420 157 17 33 chr6 12980379 12980903 -169434339 + MER6A DNA MER2_type 43 605 0 2508 55 0 10 chr6 12981014 12981326 -169433916 - AluY SINE Alu -2 309 1 2162 117 17 0 chr6 12981492 12981782 -169433460 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr6 12981782 12981805 -169433437 + (GA)n Simple_repeat Simple_repeat 2 24 0 618 21 21 32 chr6 12981986 12982079 -169433163 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 1479 189 10 38 chr6 12982080 12982572 -169432670 - AluJo SINE Alu 0 483 1 341 261 135 79 chr6 12982625 12982840 -169432402 + L2 LINE L2 3045 3271 -1 5341 128 2 15 chr6 12984261 12984472 -169430770 - L1PA13 LINE L1 -7 6156 5944 2271 122 125 10 chr6 12984472 12984856 -169430386 - MSTA LTR MaLR 0 428 1 9636 172 18 10 chr6 12984856 12986495 -169428747 - MSTA-int LTR MaLR 0 1651 1 2230 118 121 23 chr6 12986495 12986885 -169428357 - MSTA LTR MaLR 0 428 1 5341 128 2 15 chr6 12986885 12987521 -169427721 - L1PA13 LINE L1 -216 5947 5318 1967 120 33 7 chr6 12987529 12987828 -169427414 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 12988209 12988231 -169427011 + AT_rich Low_complexity Low_complexity 1 22 0 181 233 17 50 chr6 12990400 12990460 -169424782 - L2 LINE L2 -55 3258 3201 403 184 22 0 chr6 12990748 12990834 -169424408 + L1ME3 LINE L1 6012 6100 -62 180 0 0 0 chr6 12991680 12991700 -169423542 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 463 240 13 52 chr6 12991835 12991989 -169423253 - MER5B DNA MER1_type -11 167 20 273 180 0 0 chr6 12992384 12992434 -169422808 - Alu SINE Alu -2 300 251 2058 146 3 3 chr6 12992468 12992776 -169422466 - AluSx SINE Alu -4 308 1 944 123 0 0 chr6 12992787 12992909 -169422333 - FLAM_C SINE Alu -21 122 1 1542 192 11 7 chr6 12994355 12994636 -169420606 - AluJo SINE Alu -30 282 1 245 229 48 24 chr6 12995281 12995364 -169419878 - L2 LINE L2 0 3313 3229 198 171 0 0 chr6 12995474 12995515 -169419727 + A-rich Low_complexity Low_complexity 1 41 0 1182 261 121 2 chr6 12995700 12996098 -169419144 - LTR16B LTR ERVL -2 462 18 234 257 98 87 chr6 12996100 12996150 -169419092 - MLT1L LTR MaLR -13 602 554 885 193 156 0 chr6 12996150 12996342 -169418900 - MER58A DNA MER1_type -1 223 2 234 257 98 87 chr6 12996342 12996474 -169418768 - MLT1L LTR MaLR -61 554 418 1036 250 79 53 chr6 12996578 12997283 -169417959 - L2 LINE L2 -15 3298 2555 1123 159 92 0 chr6 12997338 12997533 -169417709 - MER30 DNA MER1_type -17 213 1 591 311 45 8 chr6 12997533 12997800 -169417442 - L2 LINE L2 -820 2494 2218 234 242 0 76 chr6 12997802 12997868 -169417374 - MLT1J LTR MaLR -340 171 111 198 235 141 0 chr6 12997963 12998048 -169417194 + MIR SINE MIR 100 196 -66 2243 121 3 0 chr6 12998060 12998367 -169416875 + AluSq SINE Alu 1 308 -5 381 22 0 0 chr6 12999217 12999263 -169415979 + (TG)n Simple_repeat Simple_repeat 1 46 0 408 71 0 0 chr6 12999263 12999319 -169415923 + (GA)n Simple_repeat Simple_repeat 2 57 0 2467 130 19 3 chr6 12999319 12999697 -169415545 - MLT1B LTR MaLR -6 384 1 213 39 0 0 chr6 12999697 12999723 -169415519 + (TG)n Simple_repeat Simple_repeat 2 27 0 215 152 22 0 chr6 12999731 12999777 -169415465 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 215 233 23 23 chr6 12999811 12999897 -169415345 + (TA)n Simple_repeat Simple_repeat 1 86 0 342 0 0 0 chr6 13000653 13000691 -169414551 + (TG)n Simple_repeat Simple_repeat 2 39 0 1934 146 0 0 chr6 13000691 13000971 -169414271 - AluJb SINE Alu -27 285 6 262 229 16 0 chr6 13001047 13001108 -169414134 + MER5A DNA MER1_type 34 95 -94 549 299 6 0 chr6 13001390 13001567 -169413675 + MIR SINE MIR 80 257 -5 2435 325 121 37 chr6 13001942 13003892 -169411350 - L2 LINE L2 -49 3264 1147 25 0 0 0 chr6 13004372 13004397 -169410845 + AT_rich Low_complexity Low_complexity 1 25 0 752 211 48 6 chr6 13005376 13005542 -169409700 + MER5B DNA MER1_type 2 174 -4 535 229 153 0 chr6 13005554 13005711 -169409531 - MER5A DNA MER1_type 0 189 9 388 294 133 39 chr6 13005750 13006111 -169409131 + L2 LINE L2 2917 3270 -2 366 203 76 0 chr6 13006179 13006258 -169408984 - MER5B DNA MER1_type -30 148 64 195 271 45 75 chr6 13006865 13006998 -169408244 - MIR SINE MIR -75 187 59 266 247 11 21 chr6 13007864 13007957 -169407285 - L3 LINE CR1 -181 1396 1305 208 240 141 50 chr6 13008212 13008333 -169406909 - L3 LINE CR1 -499 1078 947 2131 227 23 24 chr6 13008865 13008899 -169406343 - L1 LINE L1 -1100 5046 5013 1760 178 20 0 chr6 13008899 13009191 -169406051 - AluJo SINE Alu -14 298 1 2131 227 23 24 chr6 13009191 13009732 -169405510 - L1 LINE L1 -1133 5013 4472 901 165 15 0 chr6 13009745 13009878 -169405364 - AluJo SINE Alu -177 135 1 394 164 39 0 chr6 13009879 13009983 -169405259 - L1 LINE L1 -1669 4477 4370 396 243 27 81 chr6 13009988 13010136 -169405106 - MIR SINE MIR -105 157 18 272 303 100 40 chr6 13010862 13010908 -169404334 + L2 LINE L2 2440 2482 -832 186 43 0 0 chr6 13010908 13010931 -169404311 + (TCCA)n Simple_repeat Simple_repeat 2 24 0 272 303 100 40 chr6 13010931 13011135 -169404107 + L2 LINE L2 2482 2705 -609 968 292 62 28 chr6 13011320 13011789 -169403453 - LTR33A LTR ERVL -24 499 15 226 306 42 14 chr6 13011791 13011863 -169403379 + L2 LINE L2 2987 3060 -212 489 278 122 10 chr6 13012033 13012321 -169402921 - L1MC/D LINE L1 -2234 5574 5255 2032 108 0 4 chr6 13012619 13012888 -169402354 - AluSq SINE Alu -18 295 28 636 264 119 42 chr6 13013578 13014341 -169400901 + L1MDa LINE L1 1640 2536 -4185 294 213 162 78 chr6 13014493 13014532 -169400710 + L1MDa LINE L1 2526 2560 -3980 1310 231 72 19 chr6 13014532 13014908 -169400334 - MSTD LTR MaLR 0 396 1 294 213 162 78 chr6 13014908 13015048 -169400194 + L1MDa LINE L1 2560 2687 -3853 1914 142 0 24 chr6 13015048 13015360 -169399882 + AluSx SINE Alu 1 305 0 294 213 162 78 chr6 13015360 13015512 -169399730 + L1MDa LINE L1 2687 2887 -3653 349 253 18 18 chr6 13015616 13015728 -169399514 + HERVL LTR ERVL 3074 3185 -2300 778 316 132 32 chr6 13015836 13016546 -169398696 + HERVL LTR ERVL 3377 4157 -1607 527 319 19 5 chr6 13017007 13017214 -169398028 + LTR33 LTR ERVL 5 214 -307 605 257 34 6 chr6 13017257 13017432 -169397810 + LTR33 LTR ERVL 306 485 -36 922 198 11 6 chr6 13020224 13020401 -169394841 + MLT1D LTR MaLR 1 178 -327 669 67 0 0 chr6 13020401 13020490 -169394752 + L1P5 LINE L1 5453 5541 -610 1974 159 3 0 chr6 13020765 13021074 -169394168 - AluJb SINE Alu -2 310 1 288 331 96 12 chr6 13021151 13021317 -169393925 - MIR SINE MIR -71 191 12 22 0 0 0 chr6 13021362 13021384 -169393858 + AT_rich Low_complexity Low_complexity 1 22 0 904 272 128 37 chr6 13022563 13023218 -169392024 + Charlie7 DNA MER1_type 28 742 -1870 22 70 0 0 chr6 13023367 13023410 -169391832 + AT_rich Low_complexity Low_complexity 1 43 0 1270 144 95 27 chr6 13023651 13023873 -169391369 + AluJb SINE Alu 1 237 -75 700 272 118 45 chr6 13024031 13024479 -169390763 + L2 LINE L2 2832 3312 -1 278 184 20 0 chr6 13024902 13024951 -169390291 + 5S rRNA rRNA 1 50 -71 22 0 0 0 chr6 13025787 13025809 -169389433 + AT_rich Low_complexity Low_complexity 1 22 0 191 234 198 54 chr6 13026556 13026667 -169388575 - L2 LINE L2 0 3272 3146 238 0 81 0 chr6 13029797 13029834 -169385408 + A-rich Low_complexity Low_complexity 3 42 0 240 191 0 0 chr6 13030138 13030185 -169385057 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 317 235 12 24 chr6 13030786 13030871 -169384371 + MIR3 SINE MIR 109 192 -16 319 236 55 67 chr6 13031163 13031328 -169383914 - MER112 DNA MER1_type -64 196 34 381 328 0 37 chr6 13031611 13031745 -169383497 + MIR SINE MIR 22 150 -112 265 105 0 0 chr6 13031747 13031785 -169383457 + Alu SINE Alu 1 38 -263 325 94 0 57 chr6 13031902 13031955 -169383287 + AluJb SINE Alu 240 289 -11 5404 150 40 8 chr6 13032006 13033219 -169382023 + L1MA6 LINE L1 5053 6300 0 407 268 27 0 chr6 13033253 13033365 -169381877 + MIR SINE MIR 147 261 -1 5654 144 33 14 chr6 13033858 13033921 -169381321 + L1PB1 LINE L1 4340 4400 -1769 261 57 0 0 chr6 13033921 13033956 -169381286 + (CA)n Simple_repeat Simple_repeat 2 36 0 5654 144 33 14 chr6 13033956 13035685 -169379557 + L1PB1 LINE L1 4400 6169 0 378 254 79 28 chr6 13035950 13036107 -169379135 - MIR SINE MIR -40 168 3 387 334 83 21 chr6 13036310 13036837 -169378405 + L1ME4a LINE L1 5562 6121 0 2423 73 0 16 chr6 13037336 13037650 -169377592 - AluY SINE Alu 0 311 3 505 212 73 60 chr6 13039781 13039932 -169375310 + MIR SINE MIR 90 242 -20 222 118 0 0 chr6 13040329 13040363 -169374879 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 1879 184 77 5 chr6 13040465 13040868 -169374374 - MSTB1 LTR MaLR 0 432 1 252 59 0 0 chr6 13041237 13041271 -169373971 + (TC)n Simple_repeat Simple_repeat 1 34 0 611 157 38 143 chr6 13041356 13041566 -169373676 - 7SK RNA RNA -5 188 1 1916 87 4 4 chr6 13043107 13043359 -169371883 - AluSx SINE Alu -60 252 1 23 33 0 0 chr6 13044085 13044115 -169371127 + AT_rich Low_complexity Low_complexity 1 30 0 229 358 18 18 chr6 13044243 13044352 -169370890 + L3 LINE CR1 1446 1554 -23 28 0 0 0 chr6 13044392 13044420 -169370822 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr6 13044792 13044836 -169370406 + AT_rich Low_complexity Low_complexity 1 44 0 600 286 12 74 chr6 13046575 13046866 -169368376 + MIR SINE MIR 2 262 0 243 384 13 33 chr6 13047073 13047224 -169368018 + L2 LINE L2 2150 2297 -1017 929 193 16 21 chr6 13047319 13047506 -169367736 + MER5A DNA MER1_type 4 189 0 270 0 0 0 chr6 13047528 13047558 -169367684 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1953 115 4 11 chr6 13047564 13047843 -169367399 - AluSq SINE Alu -36 277 1 200 291 48 87 chr6 13048907 13049010 -169366232 - L2 LINE L2 -35 3237 3139 1780 167 35 0 chr6 13049060 13049347 -169365895 + AluJo SINE Alu 1 297 -15 2116 121 7 0 chr6 13049355 13049660 -169365582 + AluSp SINE Alu 1 307 -6 453 338 27 34 chr6 13049815 13050111 -169365131 + HAL1 LINE L1 826 1119 -1388 300 299 41 41 chr6 13050332 13050479 -169364763 + HAL1 LINE L1 2328 2474 -33 1876 172 61 50 chr6 13051842 13052302 -169362940 + MLT1C LTR MaLR 3 467 0 350 325 7 7 chr6 13052579 13052733 -169362509 - L1ME LINE L1 -420 5701 5548 911 168 22 16 chr6 13052785 13052970 -169362272 + L1MA9 LINE L1 6125 6310 -2 222 333 123 9 chr6 13053188 13053302 -169361940 + MIR SINE MIR 120 246 -16 389 251 35 88 chr6 13053555 13053701 -169361541 + MIR SINE MIR 51 188 -74 2058 231 63 19 chr6 13053701 13054242 -169361000 - MLT1F1 LTR MaLR -2 565 1 389 251 35 88 chr6 13054242 13054266 -169360976 + MIR SINE MIR 188 212 -50 354 309 66 49 chr6 13054966 13055393 -169359849 + L1M4 LINE L1 4668 5101 -1045 303 289 18 78 chr6 13055501 13055657 -169359585 - MIR SINE MIR -12 250 105 505 259 17 0 chr6 13055657 13055773 -169359469 + MER5B DNA MER1_type 2 119 -59 195 189 27 0 chr6 13055781 13055818 -169359424 - MIR SINE MIR -164 98 61 605 255 34 7 chr6 13056204 13056353 -169358889 + MIR SINE MIR 5 157 -105 1701 245 98 6 chr6 13056362 13056844 -169358398 - MLT1F LTR MaLR -16 526 1 1391 188 4 8 chr6 13056880 13057120 -169358122 - MER8 DNA MER2_type 0 239 1 325 247 21 62 chr6 13057226 13057323 -169357919 + MER5B DNA MER1_type 83 175 -3 803 202 11 22 chr6 13057379 13057557 -169357685 + MER5B DNA MER1_type 2 177 -1 192 77 0 0 chr6 13059964 13059990 -169355252 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 234 299 0 72 chr6 13060633 13060730 -169354512 - L2 LINE L2 0 3313 3224 203 255 0 20 chr6 13061724 13061775 -169353467 - MIR SINE MIR -114 148 99 253 220 0 0 chr6 13061941 13061991 -169353251 - MIR SINE MIR -74 188 139 615 206 171 0 chr6 13062645 13062791 -169352451 + MER5A DNA MER1_type 13 183 -6 2058 121 0 17 chr6 13063342 13063639 -169351603 - AluSx SINE Alu -20 292 1 243 213 12 38 chr6 13063938 13064018 -169351224 + (TG)n Simple_repeat Simple_repeat 2 79 0 216 0 0 0 chr6 13064133 13064157 -169351085 + (TG)n Simple_repeat Simple_repeat 1 24 0 267 211 21 63 chr6 13064225 13064320 -169350922 + (TG)n Simple_repeat Simple_repeat 2 92 0 1072 301 43 10 chr6 13064494 13064892 -169350350 + L2 LINE L2 2378 2788 -526 717 256 110 18 chr6 13065085 13065304 -169349938 + MIR SINE MIR 3 241 -21 471 258 113 25 chr6 13065682 13065841 -169349401 + MIR SINE MIR 40 212 -50 247 346 86 25 chr6 13066267 13066429 -169348813 + L2 LINE L2 3098 3269 -3 952 123 0 19 chr6 13067274 13067428 -169347814 + L1PA14 LINE L1 6009 6159 -2 4019 101 10 2 chr6 13067935 13068519 -169346723 + L1PA13 LINE L1 5575 6163 0 2719 253 53 19 chr6 13068532 13070305 -169344937 - L1MEc LINE L1 -3101 3114 1331 370 318 15 45 chr6 13070522 13070654 -169344588 - L2 LINE L2 -1 3271 3144 1628 190 31 34 chr6 13072622 13073007 -169342235 - MLT1B LTR MaLR 0 390 7 184 254 102 0 chr6 13073328 13073387 -169341855 + MIR SINE MIR 90 154 -108 220 376 24 0 chr6 13073840 13073925 -169341317 + MIR3 SINE MIR 111 197 -11 1295 171 15 11 chr6 13074715 13074978 -169340264 - L1MA6 LINE L1 0 6300 6037 303 364 21 30 chr6 13075201 13075437 -169339805 + L2 LINE L2 2629 2862 -452 1504 229 51 20 chr6 13076104 13076553 -169338689 + MLT1C LTR MaLR 1 463 -4 2339 90 0 23 chr6 13076805 13077115 -169338127 - AluSx SINE Alu -9 303 1 305 169 34 17 chr6 13078753 13078812 -169336430 + L3 LINE CR1 433 492 -1085 447 365 79 16 chr6 13078836 13079140 -169336102 + L3 LINE CR1 985 1307 -270 402 290 126 28 chr6 13079159 13079343 -169335899 + MIR SINE MIR 4 204 -58 220 279 150 50 chr6 13079362 13079428 -169335814 + L3 LINE CR1 1317 1375 -202 2162 93 21 0 chr6 13079428 13079719 -169335523 + AluY SINE Alu 1 297 -14 220 279 150 50 chr6 13079719 13079792 -169335450 + L3 LINE CR1 1375 1470 -107 21 0 0 0 chr6 13080389 13080410 -169334832 + AT_rich Low_complexity Low_complexity 1 21 0 327 104 0 0 chr6 13081183 13081231 -169334011 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 232 261 23 85 chr6 13081391 13081516 -169333726 - MIR SINE MIR -89 119 6 * 514 348 108 32 chr6 13081480 13081980 -169333262 + L2 LINE L2 2030 2567 -747 198 0 0 0 chr6 13082840 13082862 -169332380 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1473 120 0 10 chr6 13082868 13083077 -169332165 - AluSg/x SINE Alu -21 289 83 2190 119 3 0 chr6 13083241 13083535 -169331707 + AluSc SINE Alu 1 295 -14 263 167 0 21 chr6 13083896 13083944 -169331298 + MIR SINE MIR 65 111 -151 261 255 43 152 chr6 13083967 13084198 -169331044 - L2 LINE L2 -6 3307 3102 1027 229 188 48 chr6 13084245 13084686 -169330556 + MLT1D LTR MaLR 3 505 0 218 343 46 28 chr6 13085338 13085446 -169329796 + L2 LINE L2 3158 3267 -5 1138 284 131 81 chr6 13085631 13086074 -169329168 - L2 LINE L2 0 3313 2893 2203 102 3 43 chr6 13086074 13086397 -169328845 + AluSq SINE Alu 1 310 -3 1138 284 131 81 chr6 13086397 13086893 -169328349 - L2 LINE L2 -420 2893 2423 2136 107 40 0 chr6 13086893 13087193 -169328049 + AluSx SINE Alu 1 312 0 1138 284 131 81 chr6 13087193 13087295 -169327947 - L2 LINE L2 -890 2423 2327 1337 203 123 42 chr6 13087295 13087724 -169327518 - MLT1C LTR MaLR -2 465 2 1138 284 131 81 chr6 13087724 13087926 -169327316 - L2 LINE L2 -986 2327 1978 21 0 0 0 chr6 13087929 13087950 -169327292 + AT_rich Low_complexity Low_complexity 1 21 0 453 304 27 70 chr6 13087973 13088302 -169326940 - L2 LINE L2 -1673 1641 1327 3845 60 31 52 chr6 13088302 13089361 -169325881 - MER11A LTR ERVK 0 1266 1 659 44 11 0 chr6 13089489 13089580 -169325662 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 1497 173 82 57 chr6 13089594 13089947 -169325295 + MLT1A1 LTR MaLR 2 363 -2 596 87 11 0 chr6 13089953 13090045 -169325197 + (TAGA)n Simple_repeat Simple_repeat 1 93 0 2254 94 7 3 chr6 13090922 13091221 -169324021 - AluSg SINE Alu -10 300 1 272 196 0 0 chr6 13091398 13091444 -169323798 - L2 LINE L2 -12 3301 3256 203 130 22 22 chr6 13091633 13091679 -169323563 + (TTA)n Simple_repeat Simple_repeat 2 47 0 297 167 0 0 chr6 13091841 13091895 -169323347 + CT-rich Low_complexity Low_complexity 2 55 0 234 0 0 0 chr6 13091906 13091932 -169323310 + (CA)n Simple_repeat Simple_repeat 1 26 0 235 412 50 8 chr6 13094461 13094580 -169320662 + L2 LINE L2 3123 3246 -26 5813 112 25 4 chr6 13095700 13096645 -169318597 - L1MA5A LINE L1 -5 6292 5328 468 284 49 49 chr6 13096854 13097058 -169318184 - MER58C DNA MER1_type -1 214 11 220 208 19 0 chr6 13097090 13097143 -169318099 + (TG)n Simple_repeat Simple_repeat 1 54 0 1215 88 0 6 chr6 13097265 13097424 -169317818 + AluY SINE Alu 1 158 -153 215 258 15 15 chr6 13097489 13097555 -169317687 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 2337 96 3 0 chr6 13097583 13097884 -169317358 - AluSq SINE Alu -11 302 1 28 0 0 0 chr6 13097885 13097913 -169317329 + AT_rich Low_complexity Low_complexity 1 28 0 269 325 0 4 chr6 13099196 13099298 -169315944 - MIR SINE MIR -66 142 47 296 305 78 14 chr6 13099500 13099641 -169315601 - MIR SINE MIR -74 188 39 1711 269 92 36 chr6 13099704 13100670 -169314572 + L2 LINE L2 2291 3313 0 273 206 260 0 chr6 13101139 13101212 -169314030 - MER63 DNA MER1_type -273 787 696 199 293 217 9 chr6 13101551 13101657 -169313585 + MIR SINE MIR 124 251 -11 23 0 0 0 chr6 13101905 13101928 -169313314 + AT_rich Low_complexity Low_complexity 1 23 0 219 36 0 0 chr6 13101949 13101977 -169313265 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2604 46 0 3 chr6 13102217 13102524 -169312718 + AluY SINE Alu 1 306 -5 4585 153 37 2 chr6 13103703 13104576 -169310666 - L1MA8 LINE L1 -4 6287 5385 1898 131 44 7 chr6 13104629 13104926 -169310316 + AluSq SINE Alu 1 308 -5 1038 229 95 16 chr6 13104994 13105309 -169309933 + MER2 DNA MER2_type 5 344 0 432 306 61 11 chr6 13105577 13105757 -169309485 + MIR SINE MIR 20 208 -54 834 283 93 20 chr6 13105899 13106359 -169308883 + L2 LINE L2 2820 3313 0 180 0 0 0 chr6 13106400 13106420 -169308822 + (TGGGGG)n Simple_repeat Simple_repeat 6 25 0 22 0 0 0 chr6 13107349 13107371 -169307871 + AT_rich Low_complexity Low_complexity 1 22 0 2260 85 0 0 chr6 13107888 13108193 -169307049 - AluSx SINE Alu 0 305 1 1642 179 41 10 chr6 13109419 13109709 -169305533 + AluJo SINE Alu 1 299 -13 2088 100 29 4 chr6 13109904 13110184 -169305058 + AluSq SINE Alu 11 297 -16 2115 65 0 0 chr6 13110566 13110814 -169304428 + AluY SINE Alu 35 324 0 231 71 0 24 chr6 13110814 13110856 -169304386 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1468 207 48 46 chr6 13110995 13111076 -169304166 - LTR40b LTR ERVL 0 462 383 2034 160 56 47 chr6 13111076 13111502 -169303740 - MSTB1 LTR MaLR 0 432 3 1468 207 48 46 chr6 13111502 13111855 -169303387 - LTR40b LTR ERVL -79 383 27 223 102 17 51 chr6 13112039 13112098 -169303144 + (TATAA)n Simple_repeat Simple_repeat 4 60 0 1039 285 8 0 chr6 13113016 13113258 -169301984 + MIR SINE MIR 19 262 0 2395 103 0 0 chr6 13113343 13113645 -169301597 + AluSx SINE Alu 1 302 -10 309 192 0 0 chr6 13113668 13113720 -169301522 + L2 LINE L2 3258 3309 -4 1900 134 66 27 chr6 13114762 13115149 -169300093 + MLT1B LTR MaLR 1 390 0 255 256 61 24 chr6 13115277 13115359 -169299883 + MIR SINE MIR 60 144 -118 387 0 0 0 chr6 13116243 13116286 -169298956 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 759 159 0 0 chr6 13116286 13116399 -169298843 - FRAM SINE Alu -32 144 32 262 382 73 33 chr6 13117037 13117338 -169297904 - L2 LINE L2 -529 2785 2473 185 331 34 54 chr6 13117923 13118071 -169297171 + MIR3 SINE MIR 1 145 -63 27 0 0 0 chr6 13118940 13118967 -169296275 + AT_rich Low_complexity Low_complexity 1 27 0 205 196 0 22 chr6 13121683 13121729 -169293513 + CT-rich Low_complexity Low_complexity 3 47 0 269 160 0 0 chr6 13122468 13122518 -169292724 - MLT1K LTR MaLR -16 572 523 436 326 103 21 chr6 13122630 13122863 -169292379 - MLT1K LTR MaLR -241 347 96 327 191 0 0 chr6 13123514 13123582 -169291660 + GA-rich Low_complexity Low_complexity 3 70 0 232 287 22 42 chr6 13124125 13124246 -169290996 - MIR SINE MIR -33 175 53 2170 107 0 0 chr6 13126888 13127210 -169288032 - AluY SINE Alu 0 311 1 528 258 98 37 chr6 13127543 13127713 -169287529 - L1ME4a LINE L1 -204 5917 5759 2116 103 0 0 chr6 13127713 13127986 -169287256 - AluSq SINE Alu 0 313 41 528 258 98 37 chr6 13127986 13128191 -169287051 - L1ME4a LINE L1 -362 5759 5519 192 77 0 0 chr6 13128606 13128632 -169286610 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 15256 181 36 35 chr6 13128881 13130746 -169284496 + L1PA13 LINE L1 14 1876 -4938 2265 118 0 3 chr6 13130746 13131051 -169284191 + AluSx SINE Alu 1 304 -8 15256 181 36 35 chr6 13131051 13132222 -169283020 + L1PA13 LINE L1 1876 3044 -3770 619 134 179 0 chr6 13132222 13132334 -169282908 + AluY SINE Alu 1 132 -179 15256 181 36 35 chr6 13132334 13132351 -169282891 + L1PA13 LINE L1 3044 3059 -3755 207 0 0 0 chr6 13132351 13132374 -169282868 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 243 0 0 0 chr6 13132373 13132400 -169282842 + (GA)n Simple_repeat Simple_repeat 2 28 0 15256 181 36 35 chr6 13132374 13135995 -169279247 + L1PA13 LINE L1 3059 6814 0 24 53 0 0 chr6 13136017 13136055 -169279187 + AT_rich Low_complexity Low_complexity 1 38 0 4987 136 48 14 chr6 13136482 13138113 -169277129 + L1PA16 LINE L1 4518 6166 0 1111 279 11 63 chr6 13138134 13138579 -169276663 + L2 LINE L2 2892 3313 0 1960 119 0 11 chr6 13138754 13139069 -169276173 - AluSx SINE Alu 0 314 3 447 278 149 26 chr6 13139093 13139287 -169275955 + MIR SINE MIR 37 254 -8 386 324 7 7 chr6 13139628 13139767 -169275475 - MIR SINE MIR -110 152 14 312 133 0 33 chr6 13143856 13143916 -169271326 + THE1C LTR MaLR 1 58 -317 259 200 0 0 chr6 13143921 13143976 -169271266 + THE1C LTR MaLR 10 64 -311 2031 144 17 17 chr6 13143977 13144330 -169270912 + THE1C LTR MaLR 23 375 0 306 0 0 0 chr6 13144804 13144838 -169270404 + (TG)n Simple_repeat Simple_repeat 2 35 0 3944 81 26 3 chr6 13144979 13145545 -169269697 - L1PA13 LINE L1 0 6163 5585 465 295 72 21 chr6 13145592 13145785 -169269457 + MIR SINE MIR 44 246 -16 4998 160 14 30 chr6 13146013 13147384 -169267858 + L1MA7 LINE L1 4762 6153 -138 2293 106 0 0 chr6 13147384 13147677 -169267565 + AluSc SINE Alu 1 293 -16 216 97 0 0 chr6 13147678 13147709 -169267533 + (CA)n Simple_repeat Simple_repeat 2 32 0 4998 160 14 30 chr6 13147709 13147884 -169267358 + L1MA7 LINE L1 6152 6291 0 540 45 0 0 chr6 13149180 13149247 -169265995 + (CA)n Simple_repeat Simple_repeat 1 67 0 1984 161 7 0 chr6 13150620 13150919 -169264323 + AluJb SINE Alu 3 303 -9 205 268 0 18 chr6 13151267 13151323 -169263919 + GA-rich Low_complexity Low_complexity 5 59 0 6715 93 19 8 chr6 13152484 13153510 -169261732 + L1MA1 LINE L1 5265 6302 0 23 0 0 0 chr6 13153510 13153533 -169261709 + AT_rich Low_complexity Low_complexity 1 23 0 1802 153 7 4 chr6 13153954 13154235 -169261007 + AluJo SINE Alu 1 282 -30 203 152 0 0 chr6 13154237 13154270 -169260972 + GA-rich Low_complexity Low_complexity 2 34 0 237 108 0 0 chr6 13154273 13154310 -169260932 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 184 266 127 13 chr6 13154530 13154609 -169260633 + L2 LINE L2 2442 2529 -785 29 60 0 0 chr6 13154921 13154971 -169260271 + AT_rich Low_complexity Low_complexity 1 50 0 420 303 118 56 chr6 13155038 13155395 -169259847 - L1MC4a LINE L1 -1719 6089 5711 722 167 8 0 chr6 13155405 13155525 -169259717 + FLAM_C SINE Alu 2 122 -11 21 0 0 0 chr6 13155525 13155546 -169259696 + AT_rich Low_complexity Low_complexity 1 21 0 299 246 123 35 chr6 13155564 13155735 -169259507 - L1MC4a LINE L1 -458 5663 5478 2162 97 35 0 chr6 13156666 13156955 -169258287 - AluY SINE Alu -12 299 1 9900 195 11 6 chr6 13157039 13159329 -169255913 - L1PA15 LINE L1 0 6165 3871 192 40 0 0 chr6 13159329 13159354 -169255888 + (TTG)n Simple_repeat Simple_repeat 2 26 0 9900 195 11 6 chr6 13159354 13159965 -169255277 - L1PA15 LINE L1 -2294 3871 3264 932 237 9 0 chr6 13160033 13160244 -169254998 - MER45C DNA AcHobo -740 213 1 344 286 53 8 chr6 13160248 13160381 -169254861 + MIR SINE MIR 84 222 -40 228 313 164 23 chr6 13160606 13160734 -169254508 - MER5A DNA MER1_type -1 188 43 * 259 293 53 13 chr6 13160675 13160750 -169254492 + MER5A DNA MER1_type 101 178 -11 321 237 40 0 chr6 13160807 13160883 -169254359 - MER2 DNA MER2_type 0 345 267 984 168 46 0 chr6 13160910 13161106 -169254136 - MER2 DNA MER2_type -137 208 4 1774 193 68 32 chr6 13161183 13161624 -169253618 + LTR2B LTR ERV1 34 490 0 238 250 13 13 chr6 13161632 13161708 -169253534 - L1MC4 LINE L1 -138 7904 7829 2299 101 3 0 chr6 13161729 13162027 -169253215 + AluSp SINE Alu 1 299 -14 2737 205 57 50 chr6 13162062 13163001 -169252241 - L1ME2 LINE L1 -11 6153 5222 198 0 0 0 chr6 13163001 13163023 -169252219 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2285 77 0 0 chr6 13163026 13163312 -169251930 - AluSx SINE Alu -26 286 1 2737 205 57 50 chr6 13163312 13163379 -169251863 - L1ME2 LINE L1 -943 5221 5136 730 240 18 18 chr6 13164684 13164855 -169250387 - MER5A DNA MER1_type 0 189 19 22 0 0 0 chr6 13166200 13166222 -169249020 + AT_rich Low_complexity Low_complexity 1 22 0 3522 151 108 1 chr6 13166227 13166924 -169248318 + L1MC2 LINE L1 5559 6329 -15 1855 144 45 14 chr6 13167627 13167919 -169247323 - AluSx SINE Alu -11 301 1 1001 220 0 19 chr6 13167956 13168170 -169247072 - AluJo SINE Alu -102 210 1 336 289 124 46 chr6 13170154 13170348 -169244894 + L3 LINE CR1 1363 1571 -6 21 0 0 0 chr6 13173180 13173201 -169242041 + AT_rich Low_complexity Low_complexity 1 21 0 1442 196 3 40 chr6 13173220 13173381 -169241861 - AluJo SINE Alu -18 294 129 216 0 0 0 chr6 13173381 13173405 -169241837 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2079 124 0 0 chr6 13173405 13173688 -169241554 - AluSx SINE Alu -29 283 1 1442 196 3 40 chr6 13173688 13173826 -169241416 - AluJo SINE Alu -181 131 5 250 270 0 0 chr6 13174880 13174943 -169240299 - L2 LINE L2 -7 3306 3244 375 238 99 10 chr6 13175648 13175749 -169239493 - MIR SINE MIR -67 195 86 861 253 35 0 chr6 13175939 13176137 -169239105 + MER58A DNA MER1_type 2 206 -18 335 273 68 23 chr6 13176663 13176839 -169238403 + L2 LINE L2 1602 1785 -1529 685 279 90 57 chr6 13177066 13177432 -169237810 + L2 LINE L2 1661 2038 -1276 262 276 11 46 chr6 13177438 13177525 -169237717 + L2 LINE L2 3225 3308 -5 6644 64 14 42 chr6 13177766 13178995 -169236247 - L1PA8A LINE L1 0 6131 4921 323 91 0 0 chr6 13180318 13180362 -169234880 - AluSp/q SINE Alu -100 203 160 509 290 111 17 chr6 13181318 13181523 -169233719 - MIR SINE MIR -2 260 42 395 251 22 93 chr6 13183568 13183656 -169231586 - MIR3 SINE MIR -3 205 135 1953 104 107 4 chr6 13183656 13183936 -169231306 + AluSc SINE Alu 1 309 0 395 251 22 93 chr6 13183936 13184030 -169231212 - MIR3 SINE MIR -73 135 36 * 528 246 9 0 chr6 13184026 13184136 -169231106 + L2 LINE L2 3203 3313 0 42259 36 3 4 chr6 13184756 13190911 -169224331 + L1PA3 LINE L1 9 6155 0 2652 152 2 5 chr6 13191666 13192095 -169223147 + MSTA LTR MaLR 1 428 0 859 194 27 27 chr6 13192097 13192283 -169222959 - MER5A DNA MER1_type 0 189 4 183 226 0 75 chr6 13193138 13193191 -169222051 - L2 LINE L2 0 3313 3265 1100 198 18 14 chr6 13193708 13193925 -169221317 - MER20 DNA MER1_type 0 219 2 21 0 0 0 chr6 13194399 13194420 -169220822 + AT_rich Low_complexity Low_complexity 1 21 0 227 272 19 0 chr6 13194605 13194708 -169220534 - L1MC4a LINE L1 -1800 6008 5904 284 250 0 0 chr6 13194716 13194788 -169220454 - L1MC4a LINE L1 -2072 5736 5665 650 234 5 71 chr6 13194824 13195008 -169220234 - FAM SINE Alu -3 172 1 364 135 40 0 chr6 13195116 13195190 -169220052 - L1MB2 LINE L1 -16 6155 6079 16266 151 30 37 chr6 13195204 13198033 -169217209 + L1PB1 LINE L1 1 2848 -4019 2166 124 10 3 chr6 13198033 13198339 -169216903 + AluSg SINE Alu 1 308 -2 16266 151 30 37 chr6 13198339 13200692 -169214550 + L1PB1 LINE L1 2848 5131 -1736 353 43 43 14 chr6 13200692 13200761 -169214481 + (CAAAA)n Simple_repeat Simple_repeat 5 75 0 16266 151 30 37 chr6 13200761 13202480 -169212762 + L1PB1 LINE L1 5131 6860 -7 2392 201 45 11 chr6 13202488 13203046 -169212196 - L1MB2 LINE L1 -79 6092 5516 228 299 26 0 chr6 13204238 13204315 -169210927 + L1MEd LINE L1 445 523 -5596 193 295 137 11 chr6 13204668 13204763 -169210479 - MIR SINE MIR -70 192 86 2234 107 17 0 chr6 13205039 13205337 -169209905 + AluSq SINE Alu 3 305 -8 320 275 21 42 chr6 13205437 13205579 -169209663 - L2 LINE L2 -67 3246 3108 451 283 113 32 chr6 13205584 13205895 -169209347 + L1M4 LINE L1 2933 3268 -2878 744 230 27 59 chr6 13206119 13206341 -169208901 - MER58C DNA MER1_type 0 215 1 1187 260 22 32 chr6 13206394 13206805 -169208437 + HAL1 LINE L1 1717 2123 -384 1711 177 10 10 chr6 13206898 13207209 -169208033 + AluJb SINE Alu 2 312 0 22 35 0 0 chr6 13207209 13207238 -169208004 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 13208152 13208177 -169207065 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr6 13208643 13208681 -169206561 + AT_rich Low_complexity Low_complexity 1 38 0 296 298 9 0 chr6 13210069 13210183 -169205059 - MER103 DNA DNA -19 147 33 621 334 123 41 chr6 13210780 13211580 -169203662 + L2 LINE L2 1621 2485 -829 1727 146 16 33 chr6 13211795 13212159 -169203083 + Charlie1 DNA MER1_type 2328 2689 -72 207 278 12 118 chr6 13263790 13263959 -169151283 + MIR3 SINE MIR 37 187 -21 3544 106 32 4 chr6 13263998 13264535 -169150707 + MER41A LTR ERV1 3 554 0 200 328 74 70 chr6 13264647 13264794 -169150448 - MIR SINE MIR 0 262 112 2469 70 0 7 chr6 13264794 13265095 -169150147 - AluSx SINE Alu -13 299 1 200 328 74 70 chr6 13265095 13265191 -169150051 - MIR SINE MIR -150 112 18 661 216 0 0 chr6 13265601 13265717 -169149525 + FLAM_A SINE Alu 1 116 -17 544 262 124 31 chr6 13265739 13266289 -169148953 + L1ME3A LINE L1 2961 3561 -2585 271 286 50 0 chr6 13266293 13266412 -169148830 + L1ME3A LINE L1 3586 3710 -2436 525 307 53 59 chr6 13266414 13266805 -169148437 + L1ME3A LINE L1 3852 4244 -1902 1715 167 18 4 chr6 13266805 13267086 -169148156 - AluJo SINE Alu -27 285 1 525 307 53 59 chr6 13267086 13267762 -169147480 + L1ME3A LINE L1 4244 4913 -1233 626 216 49 56 chr6 13268041 13268347 -169146895 + L1ME3A LINE L1 5264 5567 -603 1637 152 7 55 chr6 13268347 13268493 -169146749 + AluJb SINE Alu 1 126 -186 2571 49 3 0 chr6 13268493 13268798 -169146444 + AluY SINE Alu 1 306 -5 1637 152 7 55 chr6 13268798 13268960 -169146282 + AluJb SINE Alu 126 294 -18 245 320 12 12 chr6 13268973 13269145 -169146097 + L1ME3A LINE L1 5785 5956 -214 2489 57 3 7 chr6 13269347 13269647 -169145595 - AluY SINE Alu -12 299 1 853 124 0 0 chr6 13270726 13270855 -169144387 - L1MA1 LINE L1 0 6302 6174 3504 179 26 9 chr6 13271220 13271919 -169143323 - MER50 LTR ERV1 -23 711 1 259 189 19 0 chr6 13271919 13271972 -169143270 - MER94 DNA DNA -78 56 3 241 286 14 14 chr6 13274394 13274464 -169140778 - L2 LINE L2 -14 3258 3189 193 352 40 40 chr6 13274674 13274799 -169140443 + L2 LINE L2 1342 1466 -1848 301 300 121 63 chr6 13275053 13275400 -169139842 + L2 LINE L2 1828 2194 -1120 631 303 46 26 chr6 13275413 13275720 -169139522 + L2 LINE L2 2475 2787 -527 184 350 82 0 chr6 13277085 13277182 -169138060 + MIR SINE MIR 76 180 -82 1507 279 78 42 chr6 13277272 13277368 -169137874 - L2 LINE L2 0 3313 3222 1242 121 0 0 chr6 13277368 13277542 -169137700 + L1PA16 LINE L1 5979 6152 -14 1507 279 78 42 chr6 13277542 13278320 -169136922 - L2 LINE L2 -91 3222 2411 201 226 77 29 chr6 13278588 13278658 -169136584 - MIR SINE MIR -63 145 79 221 300 54 39 chr6 13279599 13279729 -169135513 + MIR3 SINE MIR 4 135 -73 330 26 0 0 chr6 13280142 13280181 -169135061 + (CA)n Simple_repeat Simple_repeat 2 40 0 570 270 115 40 chr6 13280369 13280569 -169134673 + MIR SINE MIR 48 262 0 180 209 47 0 chr6 13281080 13281123 -169134119 - L2 LINE L2 -15 3257 3213 26 0 0 0 chr6 13281626 13281652 -169133590 + AT_rich Low_complexity Low_complexity 1 26 0 290 217 19 28 chr6 13282237 13282343 -169132899 + T-rich Low_complexity Low_complexity 1 105 0 249 57 0 0 chr6 13284878 13284913 -169130329 + (CA)n Simple_repeat Simple_repeat 2 36 0 1495 168 58 45 chr6 13285098 13285390 -169129852 - AluJo SINE Alu -16 296 1 224 251 99 89 chr6 13286422 13286613 -169128629 + MIR SINE MIR 14 206 -56 2323 236 71 24 chr6 13287519 13287863 -169127379 + L1ME2 LINE L1 5069 5396 -768 2014 145 0 0 chr6 13287863 13288159 -169127083 - AluJb SINE Alu -16 296 1 2323 236 71 24 chr6 13288159 13288796 -169126446 + L1ME2 LINE L1 5396 6100 -64 936 300 53 34 chr6 13288810 13289336 -169125906 + L1ME LINE L1 7 542 -5528 974 259 44 33 chr6 13289340 13289959 -169125283 + L1ME LINE L1 589 1192 -4888 234 227 13 13 chr6 13289955 13290030 -169125212 + L1MC5 LINE L1 7843 7917 -44 * 2144 111 11 0 chr6 13291972 13292293 -169122949 + AluSx SINE Alu 1 324 0 590 322 74 41 chr6 13292532 13293072 -169122170 + HAL1 LINE L1 154 711 -1796 526 239 111 86 chr6 13293181 13293379 -169121863 - MLT1J1 LTR MaLR -135 311 105 2427 93 0 13 chr6 13293379 13293691 -169121551 - AluSx SINE Alu -4 308 1 526 239 111 86 chr6 13293691 13293726 -169121516 - MLT1J1 LTR MaLR -341 105 72 262 261 94 11 chr6 13293872 13294052 -169121190 + HAL1 LINE L1 1003 1197 -1310 932 264 64 55 chr6 13294075 13294289 -169120953 + HAL1 LINE L1 1506 1716 -791 2759 26 0 0 chr6 13294289 13294602 -169120640 + AluYb8 SINE Alu 1 313 -5 932 264 64 55 chr6 13294602 13294898 -169120344 + HAL1 LINE L1 1716 2026 -481 843 131 6 86 chr6 13294898 13294943 -169120299 + L1PB2 LINE L1 5991 6038 -113 2001 108 15 0 chr6 13294943 13295212 -169120030 + AluSg SINE Alu 22 294 -16 843 131 6 86 chr6 13295212 13295341 -169119901 + L1PB2 LINE L1 6038 6151 0 932 264 64 55 chr6 13295341 13295451 -169119791 + HAL1 LINE L1 2026 2133 -374 1127 286 94 24 chr6 13295481 13295949 -169119293 - MLT1E LTR MaLR -92 501 1 401 222 57 57 chr6 13296036 13296212 -169119030 + HAL1 LINE L1 2225 2400 -107 31 26 0 0 chr6 13296258 13296296 -169118946 + AT_rich Low_complexity Low_complexity 1 38 0 1024 149 0 24 chr6 13296355 13296523 -169118719 + AluSg/x SINE Alu 122 285 -27 311 233 113 75 chr6 13297448 13297581 -169117661 - MIR SINE MIR -55 153 16 25 0 0 0 chr6 13297633 13297658 -169117584 + AT_rich Low_complexity Low_complexity 1 25 0 2418 170 15 37 chr6 13297677 13298212 -169117030 + L1MB8 LINE L1 5654 6176 -2 858 110 26 0 chr6 13298590 13298731 -169116511 - THE1C LTR MaLR 0 375 243 723 22 11 0 chr6 13298732 13298823 -169116419 - L1PA4 LINE L1 -199 5955 5864 1666 34 24 0 chr6 13298823 13299019 -169116223 + L1PA4 LINE L1 5942 6154 -1 811 131 91 107 chr6 13299024 13299276 -169115966 - THE1C LTR MaLR -127 248 1 254 278 0 0 chr6 13299290 13299344 -169115898 - L2 LINE L2 -16 3256 3203 319 329 7 7 chr6 13300589 13300729 -169114513 + (TA)n Simple_repeat Simple_repeat 1 140 0 734 265 22 0 chr6 13300852 13301037 -169114205 + MIR SINE MIR 70 258 -4 212 178 44 0 chr6 13301098 13301143 -169114099 + (TG)n Simple_repeat Simple_repeat 2 48 0 * 219 204 20 0 chr6 13301114 13301163 -169114079 + (TA)n Simple_repeat Simple_repeat 1 50 0 252 0 0 0 chr6 13301335 13301363 -169113879 + (TA)n Simple_repeat Simple_repeat 1 28 0 2707 120 24 54 chr6 13301377 13301839 -169113403 + L1MA9 LINE L1 5789 6263 -49 1680 185 21 0 chr6 13301839 13302179 -169113063 + L1MA6 LINE L1 5950 6296 -4 2707 120 24 54 chr6 13302179 13302206 -169113036 + L1MA9 LINE L1 6263 6263 -49 2287 109 3 0 chr6 13302206 13302509 -169112733 - AluSc SINE Alu -5 304 1 2707 120 24 54 chr6 13302509 13302558 -169112684 + L1MA9 LINE L1 6263 6312 0 4101 137 19 11 chr6 13302691 13303385 -169111857 + L1PA16 LINE L1 5468 6166 0 351 262 24 0 chr6 13304426 13304510 -169110732 + MIR SINE MIR 64 149 -113 684 67 0 0 chr6 13305755 13305845 -169109397 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 643 180 117 0 chr6 13305845 13305973 -169109269 - FAM SINE Alu -31 154 12 2304 105 0 3 chr6 13306172 13306478 -169108764 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr6 13306478 13306499 -169108743 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 13307101 13307136 -169108106 + AT_rich Low_complexity Low_complexity 1 35 0 2062 127 0 0 chr6 13307267 13307584 -169107658 + AluSg SINE Alu 1 317 0 2062 147 0 19 chr6 13308548 13308861 -169106381 - AluJo SINE Alu -5 307 1 308 235 0 12 chr6 13309825 13309906 -169105336 + MER116 DNA Mariner 1 80 0 225 0 0 0 chr6 13310111 13310136 -169105106 + (A)n Simple_repeat Simple_repeat 1 25 0 11148 102 5 3 chr6 13310136 13312614 -169102628 - L1PA8A LINE L1 -27 6104 3620 704 202 38 11 chr6 13312865 13313048 -169102194 + MER53 DNA DNA 2 189 0 250 273 61 10 chr6 13313053 13313152 -169102090 - MER117 DNA MER1_type -91 106 3 24 85 0 0 chr6 13314401 13314460 -169100782 + AT_rich Low_complexity Low_complexity 1 59 0 551 291 45 17 chr6 13314611 13314790 -169100452 - MIR SINE MIR -51 211 28 391 293 87 41 chr6 13314790 13315182 -169100060 - L1ME4a LINE L1 -206 5915 5506 887 238 0 0 chr6 13316217 13316389 -169098853 + AluJb SINE Alu 115 286 -26 1595 50 0 0 chr6 13316657 13316856 -169098386 + L1PA7 LINE L1 5950 6148 -6 321 276 105 20 chr6 13317007 13317159 -169098083 + L1ME4a LINE L1 5956 6120 -1 2462 233 55 25 chr6 13317172 13318431 -169096811 - L1ME2 LINE L1 -7 6157 4857 2168 105 7 17 chr6 13318442 13318738 -169096504 + AluSc SINE Alu 1 293 -16 5083 75 3 1 chr6 13318827 13319496 -169095746 - L1PA7 LINE L1 -3 6151 5482 405 293 66 98 chr6 13319576 13319838 -169095404 + L3 LINE CR1 1250 1501 -76 8802 74 5 0 chr6 13319838 13321803 -169093439 + L1PA7 LINE L1 4199 6164 0 405 293 66 98 chr6 13321803 13321874 -169093368 + L3 LINE CR1 1501 1573 -4 26 0 0 0 chr6 13322389 13322415 -169092827 + AT_rich Low_complexity Low_complexity 1 26 0 636 283 72 45 chr6 13322535 13322772 -169092470 + MLT1H LTR MaLR 9 259 -290 2131 153 80 10 chr6 13322772 13323172 -169092070 + MSTA LTR MaLR 1 428 0 636 283 72 45 chr6 13323172 13323266 -169091976 + MLT1H LTR MaLR 259 349 -200 202 299 47 0 chr6 13324513 13324640 -169090602 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 21 0 0 0 chr6 13324736 13324757 -169090485 + AT_rich Low_complexity Low_complexity 1 21 0 1665 176 6 56 chr6 13324835 13325159 -169090083 - AluJb SINE Alu 0 312 5 242 326 51 25 chr6 13326308 13326504 -169088738 + L1MC4a LINE L1 5743 5943 -1865 457 268 49 19 chr6 13326574 13326904 -169088338 - L1MEd LINE L1 -4865 1254 1010 206 183 17 17 chr6 13327367 13327427 -169087815 + A-rich Low_complexity Low_complexity 4 63 0 562 293 12 35 chr6 13327958 13328217 -169087025 + HAL1 LINE L1 115 367 -2140 * 3663 159 58 25 chr6 13328209 13329015 -169086227 + L1MB7 LINE L1 5352 6184 0 713 80 10 0 chr6 13329024 13329124 -169086118 + L1PA7 LINE L1 6051 6151 -3 1279 266 51 27 chr6 13329167 13329679 -169085563 + HAL1 LINE L1 1356 1879 -628 291 130 0 0 chr6 13330059 13330113 -169085129 - Alu SINE Alu -2 300 247 924 149 0 14 chr6 13330113 13330261 -169084981 - AluJo SINE Alu -166 146 1 1680 141 6 74 chr6 13330329 13330641 -169084601 + AluJb SINE Alu 1 291 -21 198 0 0 0 chr6 13330641 13330663 -169084579 + (GA)n Simple_repeat Simple_repeat 2 23 0 397 181 21 0 chr6 13331361 13331455 -169083787 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 898 112 22 17 chr6 13331467 13331646 -169083596 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1965 239 26 24 chr6 13331720 13332260 -169082982 + MER77 LTR ERV1 58 598 -7 836 305 31 42 chr6 13332516 13333061 -169082181 + HAL1b LINE L1 434 972 -376 611 249 40 12 chr6 13333113 13333286 -169081956 - MIR SINE MIR -26 236 59 366 263 88 5 chr6 13333343 13333548 -169081694 + HAL1b LINE L1 1074 1295 -53 31 0 0 0 chr6 13333579 13333610 -169081632 + AT_rich Low_complexity Low_complexity 1 31 0 343 329 93 23 chr6 13333650 13333960 -169081282 + L1ME4a LINE L1 5784 6115 -6 342 280 19 9 chr6 13334358 13334465 -169080777 + MER5A DNA MER1_type 9 116 -73 30 83 0 0 chr6 13335032 13335104 -169080138 + AT_rich Low_complexity Low_complexity 1 72 0 192 232 89 0 chr6 13335447 13335503 -169079739 - MIR SINE MIR -114 148 88 302 218 73 73 chr6 13335685 13335809 -169079433 + L1ME2 LINE L1 5950 6073 -91 226 186 113 41 chr6 13335814 13335911 -169079331 + L1MC4 LINE L1 7924 8027 -15 27 62 0 0 chr6 13335920 13335968 -169079274 + AT_rich Low_complexity Low_complexity 1 48 0 2385 84 3 3 chr6 13336409 13336719 -169078523 - AluSx SINE Alu 0 312 3 2195 117 10 0 chr6 13337007 13337314 -169077928 + AluSx SINE Alu 1 310 -2 2236 86 7 0 chr6 13338110 13338414 -169076828 - AluSx SINE Alu -6 306 1 21 0 0 0 chr6 13339401 13339422 -169075820 + AT_rich Low_complexity Low_complexity 1 21 0 535 299 90 80 chr6 13339494 13339765 -169075477 + L1M4 LINE L1 2141 2408 -3738 2331 100 0 0 chr6 13339765 13340064 -169075178 + AluSg SINE Alu 1 299 -11 535 299 90 80 chr6 13340064 13340502 -169074740 + L1M4 LINE L1 2408 2857 -3289 248 163 73 49 chr6 13340613 13340736 -169074506 + Charlie7 DNA MER1_type 2420 2545 -67 1375 221 22 56 chr6 13340801 13341155 -169074087 - MLT1C LTR MaLR 0 467 130 2860 3 0 0 chr6 13341155 13341464 -169073778 - AluYa5 SINE Alu -2 309 1 1375 221 22 56 chr6 13341464 13341558 -169073684 - MLT1C LTR MaLR -337 130 34 186 103 0 0 chr6 13342879 13342908 -169072334 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 171 49 0 chr6 13342912 13342953 -169072289 - L2 LINE L2 -38 3234 3192 345 348 15 7 chr6 13343464 13343599 -169071643 + HAL1b LINE L1 454 589 -759 29 0 0 0 chr6 13344035 13344064 -169071178 + AT_rich Low_complexity Low_complexity 1 29 0 258 317 49 54 chr6 13344147 13344352 -169070890 + LTR67 LTR ERVL 114 317 -240 2735 73 98 5 chr6 13344355 13344765 -169070477 + LTR7 LTR ERV1 1 448 -2 16198 99 30 12 chr6 13344767 13347947 -169067295 + HERVH LTR ERV1 1 2987 -4726 822 142 20 0 chr6 13347941 13348089 -169067153 + HERVH LTR ERV1 3140 3290 -4423 * 3266 95 4 4 chr6 13348088 13348582 -169066660 + HERVH LTR ERV1 3500 3993 -3720 4326 125 0 1 chr6 13348584 13349247 -169065995 + HERVH LTR ERV1 4488 5149 -2564 1371 116 19 0 chr6 13349248 13349464 -169065778 + HERVH LTR ERV1 5600 5819 -1894 2268 93 48 13 chr6 13349464 13349841 -169065401 + HERVH LTR ERV1 7324 7713 0 1885 102 8 8 chr6 13349841 13350200 -169065042 + LTR7 LTR ERV1 1 448 -2 356 341 62 0 chr6 13351388 13351517 -169063725 - L2 LINE L2 -2 3270 3134 2195 117 0 19 chr6 13351688 13351996 -169063246 + AluSg SINE Alu 1 302 -8 222 137 59 0 chr6 13352011 13352062 -169063180 + A-rich Low_complexity Low_complexity 2 55 0 238 302 220 17 chr6 13352664 13353137 -169062105 - L2 LINE L2 -1018 2296 1728 2385 113 5 35 chr6 13353881 13354254 -169060988 + THE1B LTR MaLR 3 364 0 606 122 0 0 chr6 13354320 13354418 -169060824 + (TCCC)n Simple_repeat Simple_repeat 1 98 0 1425 182 35 42 chr6 13354418 13354704 -169060538 - AluJo SINE Alu -28 284 1 2242 100 0 0 chr6 13355980 13356261 -169058981 + AluSx SINE Alu 5 288 -24 234 0 0 0 chr6 13356261 13356287 -169058955 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 637 130 0 37 chr6 13356589 13356697 -169058545 + FLAM_A SINE Alu 20 123 -19 847 209 13 0 chr6 13357094 13357279 -169057963 - AluJb SINE Alu 0 309 123 252 0 0 0 chr6 13357287 13357315 -169057927 + (TA)n Simple_repeat Simple_repeat 2 29 0 899 143 7 0 chr6 13357325 13357465 -169057777 - FLAM_C SINE Alu 0 143 3 359 276 176 19 chr6 13357730 13357991 -169057251 - L2 LINE L2 -731 2583 2282 318 132 0 0 chr6 13357994 13358047 -169057195 + (CA)n Simple_repeat Simple_repeat 2 54 0 268 200 44 33 chr6 13358054 13358144 -169057098 + L1MC4 LINE L1 6613 6703 -1339 226 156 0 0 chr6 13358124 13358169 -169057073 - L1MC4 LINE L1 -1339 6703 6659 * 369 357 31 16 chr6 13358237 13358492 -169056750 - L2 LINE L2 -1063 2251 1993 1916 154 3 0 chr6 13359309 13359594 -169055648 + AluSx SINE Alu 1 286 -26 393 338 49 63 chr6 13359848 13360132 -169055110 + HAL1b LINE L1 63 342 -1006 873 136 21 29 chr6 13360741 13360881 -169054361 - FRAM SINE Alu -18 158 20 598 175 9 0 chr6 13360908 13361022 -169054220 - MER20 DNA MER1_type -48 171 57 2435 83 62 10 chr6 13361022 13361406 -169053836 + MLT2A1 LTR ERVL 1 404 -40 372 150 0 0 chr6 13361406 13361486 -169053756 + (TA)n Simple_repeat Simple_repeat 2 81 0 211 234 11 11 chr6 13361608 13361702 -169053540 + (TA)n Simple_repeat Simple_repeat 1 94 0 2152 98 4 0 chr6 13361723 13361997 -169053245 + AluSx SINE Alu 16 290 -22 230 271 10 52 chr6 13361997 13362093 -169053149 + L1MC5 LINE L1 6647 6738 -1223 2191 116 10 7 chr6 13362096 13362406 -169052836 + AluSx SINE Alu 1 311 -1 243 0 0 0 chr6 13362415 13362442 -169052800 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1740 181 3 26 chr6 13362447 13362756 -169052486 + AluJo SINE Alu 3 304 -8 1818 220 55 80 chr6 13362757 13363571 -169051671 + L1MC5 LINE L1 6735 7528 -433 250 241 65 9 chr6 13363727 13363835 -169051407 + L1ME3A LINE L1 6027 6140 -30 995 194 0 0 chr6 13363838 13364018 -169051224 - AluJo SINE Alu -6 306 127 316 326 170 0 chr6 13364142 13364366 -169050876 - L2 LINE L2 -1414 1900 1639 2010 226 106 47 chr6 13364368 13365062 -169050180 + L1MC4 LINE L1 6935 7709 -333 3667 122 2 24 chr6 13365062 13365650 -169049592 + L1PA14 LINE L1 5578 6152 -9 2010 226 106 47 chr6 13365650 13366005 -169049237 + L1MC4 LINE L1 7709 8042 0 192 351 33 26 chr6 13366011 13366162 -169049080 - L2 LINE L2 -1692 1622 1471 401 47 0 31 chr6 13369039 13369103 -169046139 - L1PA7 LINE L1 0 6154 6093 300 53 0 0 chr6 13369129 13369167 -169046075 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 220 286 54 0 chr6 13370161 13370217 -169045025 - L2 LINE L2 0 3272 3214 271 321 15 30 chr6 13372664 13372798 -169042444 - L2 LINE L2 -954 2360 2229 690 243 18 72 chr6 13372806 13373051 -169042191 - MIR SINE MIR 0 262 30 254 290 129 32 chr6 13373239 13373394 -169041848 + MIR SINE MIR 82 251 -11 1301 206 83 31 chr6 13373710 13374036 -169041206 + MER2 DNA MER2_type 2 344 0 25 51 0 0 chr6 13374489 13374528 -169040714 + AT_rich Low_complexity Low_complexity 1 39 0 3748 29 9 0 chr6 13374553 13374996 -169040246 - L1PA3 LINE L1 0 6155 5709 2281 135 10 20 chr6 13375044 13375485 -169039757 + Tigger2 DNA MER2_type 3 2718 0 2282 109 0 0 chr6 13375859 13376161 -169039081 - AluY SINE Alu -9 302 1 25 31 0 0 chr6 13376289 13376321 -169038921 + AT_rich Low_complexity Low_complexity 1 32 0 578 265 12 18 chr6 13376373 13376539 -169038703 + MER5B DNA MER1_type 14 178 0 1095 199 5 24 chr6 13376669 13376880 -169038362 + AluJo SINE Alu 82 288 -24 22 80 0 0 chr6 13376880 13376930 -169038312 + AT_rich Low_complexity Low_complexity 1 50 0 341 164 87 39 chr6 13376931 13377035 -169038207 - MER5A DNA MER1_type -77 112 4 202 259 129 118 chr6 13377066 13377236 -169038006 - MER5B DNA MER1_type -3 175 4 283 337 89 11 chr6 13377798 13377988 -169037254 + L2 LINE L2 2184 2388 -926 188 386 79 35 chr6 13378083 13378285 -169036957 + L2 LINE L2 2814 3024 -248 246 226 0 0 chr6 13379783 13379836 -169035406 - MER116 DNA Mariner -27 53 1 23 0 0 0 chr6 13380091 13380114 -169035128 + AT_rich Low_complexity Low_complexity 1 23 0 4220 202 27 14 chr6 13380983 13382033 -169033209 + L1MB3 LINE L1 4125 5187 -959 1111 158 14 38 chr6 13382033 13382242 -169033000 + AluJb SINE Alu 108 311 -1 690 123 29 14 chr6 13382243 13382381 -169032861 + GA-rich Low_complexity Low_complexity 4 143 0 5030 120 52 8 chr6 13382387 13383337 -169031905 + L1PA16 LINE L1 5180 6165 -1 423 241 25 49 chr6 13383381 13383428 -169031814 - L1MA10 LINE L1 -7 6327 6281 2870 214 63 18 chr6 13383428 13384343 -169030899 - L1ME1 LINE L1 -44 6122 5173 1317 181 16 0 chr6 13384464 13384712 -169030530 + L1MB3 LINE L1 5447 5698 -473 488 184 10 0 chr6 13384712 13384796 -169030446 + L1MB3 LINE L1 6076 6179 -4 203 373 119 16 chr6 13384961 13385087 -169030155 + MIR3 SINE MIR 41 179 -29 302 285 93 14 chr6 13385325 13385465 -169029777 + MIR SINE MIR 71 220 -42 395 263 188 25 chr6 13385519 13385679 -169029563 - MER5A DNA MER1_type 0 189 4 190 329 13 13 chr6 13385849 13385925 -169029317 - MIR3 SINE MIR -52 156 81 254 287 102 9 chr6 13387735 13387843 -169027399 + L2 LINE L2 3191 3308 -5 860 159 0 45 chr6 13387944 13388101 -169027141 - FRAM SINE Alu -26 150 1 357 274 0 0 chr6 13388402 13388486 -169026756 - MIR SINE MIR -1 261 178 183 255 43 0 chr6 13388747 13388794 -169026448 - MIR SINE MIR -109 153 105 329 107 0 18 chr6 13389658 13389714 -169025528 + (GA)n Simple_repeat Simple_repeat 2 56 0 669 159 9 0 chr6 13390753 13390860 -169024382 + FLAM_C SINE Alu 11 118 -25 24 0 0 0 chr6 13391710 13391734 -169023508 + AT_rich Low_complexity Low_complexity 1 24 0 2245 126 3 3 chr6 13392184 13392494 -169022748 - AluSx SINE Alu -2 310 1 186 43 0 0 chr6 13392753 13392776 -169022466 + (TC)n Simple_repeat Simple_repeat 1 23 0 247 271 14 14 chr6 13397900 13397970 -169017272 + MER5A DNA MER1_type 85 154 -35 451 234 27 0 chr6 13398107 13398218 -169017024 + MIR SINE MIR 128 241 -21 2190 100 14 0 chr6 13398289 13398578 -169016664 + AluSx SINE Alu 1 293 -19 240 292 25 67 chr6 13400315 13400435 -169014807 + MER5A DNA MER1_type 73 187 -2 546 200 200 52 chr6 13400461 13400616 -169014626 + MER5A DNA MER1_type 9 186 -3 1585 159 32 28 chr6 13400669 13400952 -169014290 - AluJo SINE Alu -8 304 21 532 245 28 14 chr6 13400954 13401097 -169014145 + MER5B DNA MER1_type 34 178 0 2250 106 3 16 chr6 13401236 13401547 -169013695 + AluSx SINE Alu 6 312 0 343 369 58 15 chr6 13401550 13401756 -169013486 - MIR SINE MIR -28 234 20 180 209 0 75 chr6 13402566 13402633 -169012609 + L2 LINE L2 3003 3064 -208 406 358 31 0 chr6 13402696 13402858 -169012384 + MIR SINE MIR 58 224 -38 33 43 0 0 chr6 13403049 13403096 -169012146 + AT_rich Low_complexity Low_complexity 1 47 0 239 374 108 36 chr6 13403141 13403502 -169011740 + L3b LINE CR1 1148 1534 -49 222 122 41 20 chr6 13404199 13404248 -169010994 + T-rich Low_complexity Low_complexity 2 51 0 204 280 0 0 chr6 13404688 13404738 -169010504 + GA-rich Low_complexity Low_complexity 1 50 0 1782 171 7 23 chr6 13405215 13405525 -169009717 + AluJo SINE Alu 1 305 -7 26 0 0 0 chr6 13405600 13405626 -169009616 + AT_rich Low_complexity Low_complexity 1 26 0 608 285 21 21 chr6 13405667 13405853 -169009389 + MIR SINE MIR 6 191 -71 323 255 9 9 chr6 13406051 13406157 -169009085 - MER113 DNA MER1_type? -413 108 3 352 359 93 40 chr6 13406728 13407308 -169007934 - L2 LINE L2 -452 2862 2252 2609 84 24 16 chr6 13407791 13408172 -169007070 - L1PA13 LINE L1 -11 6152 5769 423 0 0 0 chr6 13408172 13408219 -169007023 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2275 86 0 0 chr6 13408219 13408499 -169006743 - AluSg SINE Alu -30 280 1 382 309 48 17 chr6 13408764 13408945 -169006297 - MIR SINE MIR -37 225 41 2632 77 0 0 chr6 13409538 13409875 -169005367 - L1PA8A LINE L1 -3 6128 5792 303 261 136 11 chr6 13410390 13410478 -169004764 - MIR3 SINE MIR -1 207 109 406 313 129 5 chr6 13410489 13410690 -169004552 - MIR SINE MIR -6 256 31 187 307 59 59 chr6 13410715 13410816 -169004426 - MIR SINE MIR -91 117 17 439 270 61 61 chr6 13411296 13411526 -169003716 - MIR SINE MIR -6 256 27 370 358 150 9 chr6 13411546 13411772 -169003470 - MIR SINE MIR -4 258 1 2235 212 79 8 chr6 13412135 13412639 -169002603 - MLT1F LTR MaLR -2 540 1 27 49 0 0 chr6 13413884 13413925 -169001317 + AT_rich Low_complexity Low_complexity 1 41 0 261 83 0 0 chr6 13413985 13414021 -169001221 + U2 snRNA snRNA 1 36 -152 240 111 0 0 chr6 13414173 13414209 -169001033 + (TA)n Simple_repeat Simple_repeat 1 36 0 1738 170 68 0 chr6 13414230 13414553 -169000689 - MER7A DNA MER2_type 0 346 4 234 91 0 0 chr6 13414584 13414617 -169000625 + (CA)n Simple_repeat Simple_repeat 2 34 0 1253 255 96 83 chr6 13414696 13414768 -169000474 - L1MC4 LINE L1 -121 7921 7851 1872 166 36 10 chr6 13414768 13415070 -169000172 - AluJo SINE Alu -2 310 1 1253 255 96 83 chr6 13415070 13415766 -168999476 - L1MC4 LINE L1 -191 7851 7135 2216 110 0 7 chr6 13415766 13416075 -168999167 + AluSq SINE Alu 1 307 -6 1253 255 96 83 chr6 13416075 13416298 -168998944 - L1MC4 LINE L1 -907 7135 6916 22 0 0 0 chr6 13416708 13416730 -168998512 + AT_rich Low_complexity Low_complexity 1 22 0 1503 178 14 21 chr6 13416730 13417016 -168998226 - AluJo SINE Alu -17 295 12 1284 244 135 34 chr6 13417030 13417903 -168997339 - L1ME2 LINE L1 0 6164 5176 680 283 57 30 chr6 13417938 13418379 -168996863 - L1ME2 LINE L1 -2748 3398 2946 * 1537 223 70 91 chr6 13418373 13419266 -168995976 - L1M4 LINE L1 -954 5192 4318 3373 125 11 4 chr6 13419291 13419836 -168995406 - MER41B LTR ERV1 -86 549 1 5463 118 29 27 chr6 13419836 13420766 -168994476 - MER41B-int LTR ERV1 -2 5944 5013 4105 32 4 0 chr6 13420766 13421289 -168993953 + L1P LINE L1 2411 2935 -3211 2769 80 10 0 chr6 13421289 13421675 -168993567 - MER41B-int LTR ERV1 -919 5027 4638 492 174 23 0 chr6 13421669 13421755 -168993487 - MER41B-int LTR ERV1 -5858 88 1 * 974 130 0 0 chr6 13421755 13421909 -168993333 - MER41B LTR ERV1 0 635 482 633 254 40 13 chr6 13421916 13422144 -168993098 - L1M4 LINE L1 -1823 4323 4090 406 274 14 41 chr6 13422149 13422295 -168992947 - MER5A DNA MER1_type -39 150 9 338 350 15 30 chr6 13422952 13423149 -168992093 - MIR3 SINE MIR -14 194 1 239 246 8 42 chr6 13423314 13423432 -168991810 + A-rich Low_complexity Low_complexity 5 118 0 1654 194 0 14 chr6 13423437 13423731 -168991511 + AluJb SINE Alu 1 290 -22 279 292 29 40 chr6 13424396 13424500 -168990742 + MIR SINE MIR 11 115 -93 206 264 0 19 chr6 13424500 13424553 -168990689 + CT-rich Low_complexity Low_complexity 3 54 0 1365 219 0 11 chr6 13424567 13424827 -168990415 + AluJo SINE Alu 1 257 -55 306 246 6 39 chr6 13426648 13426827 -168988415 + CT-rich Low_complexity Low_complexity 3 175 0 200 219 37 37 chr6 13426994 13427076 -168988166 + C-rich Low_complexity Low_complexity 2 83 0 551 185 19 12 chr6 13427608 13427770 -168987472 + GA-rich Low_complexity Low_complexity 2 164 0 203 188 21 0 chr6 13428162 13428210 -168987032 + (TG)n Simple_repeat Simple_repeat 2 50 0 252 0 0 0 chr6 13431129 13431157 -168984085 + (TA)n Simple_repeat Simple_repeat 2 29 0 2168 97 0 37 chr6 13431157 13431456 -168983786 - AluY SINE Alu -21 290 3 1916 149 46 0 chr6 13431861 13432190 -168983052 - MER2 DNA MER2_type 0 344 1 358 287 125 15 chr6 13432454 13432590 -168982652 + MIR3 SINE MIR 37 187 -21 21 57 0 0 chr6 13432779 13432814 -168982428 + AT_rich Low_complexity Low_complexity 1 35 0 1540 271 124 30 chr6 13434121 13435015 -168980227 - L2 LINE L2 -52 3261 2452 2037 135 3 3 chr6 13435015 13435312 -168979930 + AluSx SINE Alu 1 297 -15 1540 271 124 30 chr6 13435312 13435348 -168979894 - L2 LINE L2 -861 2452 2421 1931 114 3 74 chr6 13435348 13435672 -168979570 + AluSg SINE Alu 1 301 -9 1540 271 124 30 chr6 13435672 13435706 -168979536 - L2 LINE L2 -892 2421 2221 494 321 16 26 chr6 13435696 13435886 -168979356 - MIR SINE MIR -57 205 18 * 2234 120 3 3 chr6 13436026 13436334 -168978908 + AluSx SINE Alu 1 308 -4 281 230 74 37 chr6 13436342 13436477 -168978765 + MER112 DNA MER1_type 29 168 -92 734 213 133 8 chr6 13436738 13436978 -168978264 - ORSL DNA AcHobo -5 270 1 1215 247 0 0 chr6 13437024 13437259 -168977983 + MIR SINE MIR 7 241 -21 213 325 38 0 chr6 13437689 13437769 -168977473 + GA-rich Low_complexity Low_complexity 2 84 0 2171 120 0 0 chr6 13437836 13438135 -168977107 + AluSq SINE Alu 1 299 -14 192 40 0 0 chr6 13439385 13439410 -168975832 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2179 100 7 0 chr6 13440117 13440446 -168974796 + AluSp SINE Alu 1 331 0 37 23 0 0 chr6 13441079 13441123 -168974119 + AT_rich Low_complexity Low_complexity 1 44 0 391 324 0 0 chr6 13442532 13442643 -168972599 + L2 LINE L2 3162 3272 0 252 311 0 0 chr6 13443504 13443578 -168971664 - MIR3 SINE MIR -24 184 111 759 225 115 16 chr6 13443659 13443850 -168971392 - MER63A DNA MER1_type 0 210 1 2541 53 0 0 chr6 13445292 13445596 -168969646 - AluY SINE Alu -7 304 1 986 155 53 0 chr6 13445747 13445954 -168969288 - L1M2 LINE L1 -512 5779 5562 270 128 0 0 chr6 13445952 13445999 -168969243 + L1M2 LINE L1 5747 5793 -507 * 2573 145 66 32 chr6 13446122 13446161 -168969081 + L1MA6 LINE L1 5747 5783 -517 477 0 0 0 chr6 13446161 13446214 -168969028 + (CA)n Simple_repeat Simple_repeat 2 54 0 2573 145 66 32 chr6 13446214 13446706 -168968536 + L1MA6 LINE L1 5783 6296 -4 638 227 59 49 chr6 13446813 13447016 -168968226 + MIR SINE MIR 48 252 -10 310 336 79 55 chr6 13447585 13447877 -168967365 - L2 LINE L2 -11 3261 2963 236 346 19 26 chr6 13449362 13449518 -168965724 - L2 LINE L2 -1461 1853 1699 1978 119 0 27 chr6 13451732 13452051 -168963191 - AluSq SINE Alu 0 311 1 35 54 0 0 chr6 13452645 13452701 -168962541 + AT_rich Low_complexity Low_complexity 1 56 0 27 29 0 0 chr6 13453220 13453254 -168961988 + AT_rich Low_complexity Low_complexity 1 34 0 329 391 0 0 chr6 13453255 13453370 -168961872 - L2 LINE L2 -5 3267 3153 189 0 0 0 chr6 13454573 13454594 -168960648 + (TA)n Simple_repeat Simple_repeat 1 21 0 2489 116 25 27 chr6 13454594 13454971 -168960271 - L1PA15 LINE L1 -7 6158 5781 2407 106 0 0 chr6 13454971 13455283 -168959959 - AluSx SINE Alu 0 312 1 2489 116 25 27 chr6 13455283 13455311 -168959931 - L1PA15 LINE L1 -384 5781 5754 761 236 39 6 chr6 13456192 13456374 -168958868 - MER91A DNA MER1_type 0 196 9 2407 78 3 0 chr6 13456405 13456699 -168958543 + AluSp SINE Alu 1 295 -18 243 0 0 0 chr6 13456879 13456906 -168958336 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 351 0 0 0 chr6 13457601 13457640 -168957602 + (TG)n Simple_repeat Simple_repeat 2 40 0 484 162 11 50 chr6 13461317 13461496 -168953746 + (CATATA)n Simple_repeat Simple_repeat 2 173 0 581 153 0 53 chr6 13461521 13461710 -168953532 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 593 191 29 6 chr6 13461763 13461936 -168953306 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 273 211 15 30 chr6 13461925 13462058 -168953184 + (TA)n Simple_repeat Simple_repeat 1 131 0 * 194 0 0 37 chr6 13462060 13462087 -168953155 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2136 85 22 0 chr6 13462089 13462360 -168952882 - AluSp SINE Alu -36 277 1 315 284 0 32 chr6 13462372 13462467 -168952775 - L1MC4 LINE L1 -1339 6703 6612 193 267 22 0 chr6 13464452 13464497 -168950745 - MIR3 SINE MIR -11 197 152 2045 122 0 10 chr6 13465226 13465529 -168949713 + AluSx SINE Alu 1 300 -12 2647 277 103 39 chr6 13466432 13467130 -168948112 + L2 LINE L2 1809 2461 -852 1286 45 0 0 chr6 13467130 13467284 -168947958 - L1PA3 LINE L1 -3 6152 5999 2647 277 103 39 chr6 13467284 13467992 -168947250 + L2 LINE L2 2461 3312 -1 225 296 111 0 chr6 13468372 13468453 -168946789 - L2 LINE L2 -6 3266 3177 231 331 94 31 chr6 13468961 13469121 -168946121 + MIR SINE MIR 90 259 -3 * 592 331 97 21 chr6 13469112 13469402 -168945840 - L2 LINE L2 -1 3312 3001 307 239 0 68 chr6 13469402 13469490 -168945752 + L1MC4 LINE L1 6611 6692 -1350 2574 68 3 0 chr6 13469534 13469845 -168945397 + AluSp SINE Alu 1 312 -1 213 363 0 0 chr6 13471267 13471347 -168943895 - L2 LINE L2 -5 3267 3188 366 324 0 10 chr6 13471353 13471455 -168943787 + MIR SINE MIR 22 122 -140 1163 201 49 49 chr6 13471823 13472147 -168943095 - MER33 DNA MER1_type 0 324 1 589 204 134 22 chr6 13472360 13472519 -168942723 - MER5A DNA MER1_type -6 183 4 489 281 0 16 chr6 13474227 13474355 -168940887 - MIR SINE MIR -108 154 29 297 0 0 0 chr6 13474360 13474393 -168940849 + (TG)n Simple_repeat Simple_repeat 1 33 0 1053 273 78 80 chr6 13475047 13475391 -168939851 + L2 LINE L2 2851 3195 -118 270 0 0 0 chr6 13475391 13475421 -168939821 + (CA)n Simple_repeat Simple_repeat 2 31 0 1053 273 78 80 chr6 13475421 13475538 -168939704 + L2 LINE L2 3195 3311 -2 210 98 59 20 chr6 13475539 13475590 -168939652 + GA-rich Low_complexity Low_complexity 1 53 0 1774 165 3 13 chr6 13477955 13478264 -168936978 + AluJb SINE Alu 1 306 -6 248 208 0 0 chr6 13478986 13479034 -168936208 - MIR3 SINE MIR -6 202 155 201 167 17 33 chr6 13479433 13479493 -168935749 + (TATAA)n Simple_repeat Simple_repeat 5 63 0 539 191 33 82 chr6 13479904 13480087 -168935155 - MER104 DNA MER2_type -3 177 4 981 171 15 29 chr6 13481026 13481231 -168934011 - MER20 DNA MER1_type -1 218 17 22 0 0 0 chr6 13481873 13481895 -168933347 + AT_rich Low_complexity Low_complexity 1 22 0 1599 148 110 0 chr6 13481897 13482161 -168933081 + AluJb SINE Alu 1 293 -19 2115 141 3 0 chr6 13482916 13483252 -168931990 - AluSx SINE Alu 0 337 1 658 164 17 0 chr6 13483850 13483966 -168931276 - FLAM_A SINE Alu -15 118 1 182 364 0 0 chr6 13484544 13484599 -168930643 + L2 LINE L2 3256 3310 -3 23 0 0 0 chr6 13484680 13484703 -168930539 + AT_rich Low_complexity Low_complexity 1 23 0 591 208 0 0 chr6 13486095 13486225 -168929017 + CT-rich Low_complexity Low_complexity 3 132 0 1603 159 0 54 chr6 13486243 13486539 -168928703 - AluJb SINE Alu -32 280 1 469 258 32 7 chr6 13486712 13486867 -168928375 - MER117 DNA MER1_type -37 160 2 281 47 23 0 chr6 13487662 13487705 -168927537 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 351 204 23 68 chr6 13488800 13488932 -168926310 + L1ME3 LINE L1 6037 6162 0 1963 160 22 3 chr6 13489341 13489704 -168925538 - L1MB5 LINE L1 0 6174 5805 356 353 83 29 chr6 13489707 13489948 -168925294 - MIR SINE MIR -8 254 1 21 36 0 0 chr6 13490422 13490450 -168924792 + AT_rich Low_complexity Low_complexity 1 28 0 567 195 169 13 chr6 13491173 13491327 -168923915 + MER5A DNA MER1_type 9 186 -3 223 322 246 10 chr6 13491581 13491780 -168923462 + MIR SINE MIR 6 251 -11 191 211 0 0 chr6 13491747 13491785 -168923457 + L2 LINE L2 3264 3301 -12 * 295 306 64 46 chr6 13491826 13491999 -168923243 + MIR3 SINE MIR 20 195 -13 624 280 81 5 chr6 13494774 13494985 -168920257 + MIR SINE MIR 36 262 0 2435 74 0 0 chr6 13495176 13495474 -168919768 - AluY SINE Alu -13 298 1 722 246 200 43 chr6 13495504 13495928 -168919314 - MLT1H LTR MaLR 0 549 17 306 312 23 25 chr6 13496831 13496991 -168918251 + MIR SINE MIR 34 191 -65 2110 132 3 7 chr6 13497521 13497831 -168917411 - AluSc SINE Alu 0 309 1 216 200 0 36 chr6 13497902 13497957 -168917285 + CT-rich Low_complexity Low_complexity 5 57 0 2213 132 0 3 chr6 13498531 13498835 -168916407 + AluSx SINE Alu 1 303 -9 189 0 0 0 chr6 13498835 13498856 -168916386 + (GA)n Simple_repeat Simple_repeat 2 22 0 239 302 148 13 chr6 13499056 13499205 -168916037 - MIR SINE MIR -18 244 76 602 272 28 22 chr6 13500476 13500656 -168914586 + MIR SINE MIR 65 245 -17 3561 143 2 0 chr6 13501306 13501832 -168913410 + MER1A DNA MER1_type 1 527 0 544 235 143 71 chr6 13502166 13502348 -168912894 + MIR SINE MIR 8 212 -50 1714 171 0 23 chr6 13502348 13502465 -168912777 + AluJo SINE Alu 1 119 -193 255 31 0 0 chr6 13502465 13502497 -168912745 + (CA)n Simple_repeat Simple_repeat 1 32 0 1714 171 0 23 chr6 13502497 13502683 -168912559 + AluJo SINE Alu 119 297 -15 544 235 143 71 chr6 13502683 13502738 -168912504 + MIR SINE MIR 212 262 0 261 0 0 0 chr6 13503253 13503282 -168911960 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 344 259 70 7 chr6 13505926 13506069 -168909173 + L1ME4a LINE L1 5968 6119 -2 1698 130 68 0 chr6 13506149 13506456 -168908786 + L1MA5 LINE L1 5973 6300 0 1980 116 7 10 chr6 13507024 13507317 -168907925 + AluSx SINE Alu 1 292 -20 995 109 0 27 chr6 13507327 13507510 -168907732 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 27 51 0 17 chr6 13507921 13507950 -168907292 + AT_rich Low_complexity Low_complexity 1 29 -29 2255 81 3 24 chr6 13507950 13508247 -168906995 - AluSq SINE Alu -22 291 1 27 51 0 17 chr6 13508247 13508276 -168906966 + AT_rich Low_complexity Low_complexity 29 58 0 597 150 0 0 chr6 13508277 13508377 -168906865 - L1PB4 LINE L1 -10 6146 6047 181 286 0 0 chr6 13508507 13508549 -168906693 + L2 LINE L2 3262 3303 -10 199 193 18 53 chr6 13509237 13509294 -168905948 - MIR3 SINE MIR -29 179 125 842 211 6 18 chr6 13509295 13509466 -168905776 + AluJo SINE Alu 121 289 -23 224 353 12 0 chr6 13510383 13510468 -168904774 + MIR SINE MIR 58 143 -65 2386 95 0 0 chr6 13510606 13510910 -168904332 - AluSx SINE Alu -8 304 1 384 328 109 30 chr6 13511194 13511596 -168903646 + L2 LINE L2 2874 3307 -6 243 292 54 46 chr6 13513063 13513193 -168902049 - MIR SINE MIR -85 177 47 28 48 0 0 chr6 13513296 13513338 -168901904 + AT_rich Low_complexity Low_complexity 1 42 0 3968 134 13 2 chr6 13513918 13514514 -168900728 + LTR26 LTR ERV1 1 603 0 297 274 122 12 chr6 13514992 13515156 -168900086 + MIR SINE MIR 56 237 -25 1314 190 123 3 chr6 13515160 13515444 -168899798 - MLT1E LTR MaLR 0 593 276 501 308 0 0 chr6 13515503 13515649 -168899593 - MLT1E LTR MaLR -438 155 10 180 77 0 0 chr6 13516279 13516305 -168898937 + (CTG)n Simple_repeat Simple_repeat 3 28 0 565 289 147 10 chr6 13516317 13516521 -168898721 - MIR SINE MIR -2 260 29 391 243 184 29 chr6 13518458 13518594 -168896648 - MIR SINE MIR -40 222 66 29 0 0 0 chr6 13519432 13519461 -168895781 + AT_rich Low_complexity Low_complexity 1 29 0 1704 160 13 35 chr6 13519883 13520196 -168895046 - AluJo SINE Alu -6 306 1 189 147 0 0 chr6 13520824 13520858 -168894384 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 271 313 72 15 chr6 13521265 13521364 -168893878 + MIR SINE MIR 16 119 -102 1591 202 0 31 chr6 13521464 13521786 -168893456 + AluJo SINE Alu 1 312 0 248 359 11 0 chr6 13521861 13521953 -168893289 - L2 LINE L2 -33 3280 3188 288 0 0 0 chr6 13523419 13523451 -168891791 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 181 289 0 39 chr6 13523539 13523591 -168891651 + L2 LINE L2 3211 3260 -12 1736 145 9 41 chr6 13524152 13524469 -168890773 - AluJb SINE Alu -4 308 2 180 111 0 0 chr6 13524638 13524665 -168890577 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 23 0 0 0 chr6 13525171 13525194 -168890048 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 13527207 13527228 -168888014 + AT_rich Low_complexity Low_complexity 1 21 0 378 321 19 12 chr6 13527631 13527793 -168887449 - MER117 DNA MER1_type -33 164 2 1563 208 89 51 chr6 13527912 13528360 -168886882 - MLT1C LTR MaLR -1 466 2 2203 136 0 0 chr6 13529180 13529488 -168885754 - AluSx SINE Alu -4 308 1 345 312 89 25 chr6 13529770 13529927 -168885315 + MIR3 SINE MIR 11 177 -31 415 280 137 17 chr6 13530578 13530753 -168884489 - MER117 DNA MER1_type -1 196 1 2437 112 44 19 chr6 13530872 13531238 -168884004 - THE1C LTR MaLR 0 375 1 3528 129 18 9 chr6 13531913 13532566 -168882676 + L1PA16 LINE L1 5161 5819 -347 507 191 0 0 chr6 13532573 13532657 -168882585 + AluJ/FLAM SINE Alu 2 85 -227 872 203 0 0 chr6 13532657 13532805 -168882437 + AluJo/FRAM SINE Alu 135 282 -30 2050 160 8 22 chr6 13532813 13533170 -168882072 + L1PA16 LINE L1 5814 6165 -1 2329 92 0 13 chr6 13533594 13533909 -168881333 - AluY SINE Alu 0 311 1 2032 119 25 0 chr6 13534684 13534970 -168880272 + AluSc SINE Alu 2 294 -15 192 77 0 0 chr6 13535049 13535075 -168880167 + (TTG)n Simple_repeat Simple_repeat 2 27 0 180 346 26 13 chr6 13535221 13535299 -168879943 + MIR SINE MIR 30 108 -100 * 392 336 69 0 chr6 13535295 13535426 -168879816 - L2 LINE L2 -1 3271 3132 1468 164 4 16 chr6 13535868 13536118 -168879124 + AluJo SINE Alu 5 251 -61 350 42 21 0 chr6 13536151 13536199 -168879043 + (CA)n Simple_repeat Simple_repeat 2 50 0 6429 58 12 7 chr6 13537359 13538172 -168877070 - L1PA7 LINE L1 -5 6149 5333 246 304 0 0 chr6 13539213 13539331 -168875911 + (TA)n Simple_repeat Simple_repeat 1 118 0 295 248 105 0 chr6 13540281 13540386 -168874856 + MIR SINE MIR 31 146 -116 1483 198 103 21 chr6 13540516 13540855 -168874387 - MLT1A2 LTR MaLR -4 370 4 807 189 18 18 chr6 13541540 13541704 -168873538 - MER5A DNA MER1_type 0 189 26 2455 84 0 0 chr6 13541752 13542063 -168873179 + AluY SINE Alu 1 311 0 437 274 9 9 chr6 13542412 13542525 -168872717 - MER81 DNA DNA -1 113 1 249 83 0 0 chr6 13542811 13542847 -168872395 + (TG)n Simple_repeat Simple_repeat 2 37 0 314 301 49 21 chr6 13544756 13544899 -168870343 - MIR SINE MIR -26 236 90 2301 106 3 0 chr6 13545331 13545632 -168869610 + AluSc SINE Alu 1 302 -7 231 303 15 0 chr6 13547245 13547311 -168867931 - L2 LINE L2 -16 3256 3190 205 175 123 18 chr6 13547363 13547420 -168867822 + L2 LINE L2 3209 3271 -1 801 261 36 101 chr6 13548683 13549349 -168865893 - L1MC5 LINE L1 -339 7622 7000 189 74 0 0 chr6 13549384 13549411 -168865831 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 358 239 18 37 chr6 13549435 13549544 -168865698 - L1MD3 LINE L1 -1247 6748 6642 358 288 71 38 chr6 13549526 13549766 -168865476 + L1MC5 LINE L1 7678 7925 -36 183 100 0 0 chr6 13549788 13549818 -168865424 + (CA)n Simple_repeat Simple_repeat 1 30 0 542 139 0 10 chr6 13550260 13550361 -168864881 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 1720 168 10 26 chr6 13550361 13550670 -168864572 - AluJo SINE Alu -8 304 1 276 274 153 16 chr6 13550718 13550842 -168864400 - L2 LINE L2 -11 3302 3162 806 243 15 10 chr6 13551190 13551392 -168863850 + MER58A DNA MER1_type 19 221 -3 358 252 226 0 chr6 13551410 13551525 -168863717 - MER5A DNA MER1_type -3 186 46 210 71 0 0 chr6 13552385 13552413 -168862829 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 187 265 121 36 chr6 13552770 13552853 -168862389 - MIR SINE MIR -139 123 34 413 226 235 0 chr6 13553460 13553562 -168861680 - MER91A DNA MER1_type -1 195 70 569 239 4 148 chr6 13553596 13553826 -168861416 - MIR SINE MIR -10 252 56 2098 203 74 34 chr6 13554051 13554549 -168860693 - MLT2B1 LTR ERVL 0 520 3 198 337 35 23 chr6 13555434 13555520 -168859722 + L2 LINE L2 3186 3272 0 245 346 52 22 chr6 13555746 13555882 -168859360 - MIR3 SINE MIR -47 161 22 303 292 230 19 chr6 13557005 13557166 -168858076 - MIR SINE MIR -45 217 23 553 293 100 60 chr6 13557362 13557575 -168857667 - MIR SINE MIR -3 259 33 1593 159 12 93 chr6 13557575 13557909 -168857333 - AluJb SINE Alu -5 307 1 553 293 100 60 chr6 13557909 13557944 -168857298 - MIR SINE MIR -229 33 1 366 273 133 0 chr6 13558345 13558473 -168856769 + MIR SINE MIR 114 258 -4 389 256 364 0 chr6 13558835 13559085 -168856157 + L2 LINE L2 2942 3282 -31 207 328 137 27 chr6 13559163 13559425 -168855817 - L2 LINE L2 -1106 2208 1918 193 242 0 76 chr6 13560120 13560186 -168855056 + MIR SINE MIR 156 216 -46 1951 148 0 7 chr6 13560565 13560870 -168854372 - AluSx SINE Alu -9 303 1 541 223 0 22 chr6 13561270 13561454 -168853788 + (CA)n Simple_repeat Simple_repeat 1 180 0 339 239 0 0 chr6 13561458 13561529 -168853713 + (CATA)n Simple_repeat Simple_repeat 1 71 0 2307 91 0 3 chr6 13561758 13562056 -168853186 - AluY SINE Alu -14 297 1 204 40 0 0 chr6 13562100 13562125 -168853117 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 267 93 0 0 chr6 13562160 13562203 -168853039 + (CA)n Simple_repeat Simple_repeat 2 44 0 2113 114 3 19 chr6 13563168 13563484 -168851758 + AluSx SINE Alu 1 311 -1 367 274 34 33 chr6 13563789 13563980 -168851262 - MIR SINE MIR -48 214 26 284 127 18 0 chr6 13564357 13564412 -168850830 + CT-rich Low_complexity Low_complexity 3 58 0 372 230 70 10 chr6 13564976 13565076 -168850166 - L2 LINE L2 -9 3304 3199 1157 198 70 113 chr6 13565077 13565140 -168850102 + MSTD LTR MaLR 1 65 -331 2220 113 3 16 chr6 13565140 13565449 -168849793 + AluSx SINE Alu 1 305 -7 1157 198 70 113 chr6 13565449 13565799 -168849443 + MSTD LTR MaLR 65 396 0 21 36 0 0 chr6 13565864 13565892 -168849350 + AT_rich Low_complexity Low_complexity 1 28 0 392 273 154 26 chr6 13566054 13566341 -168848901 - MLT1I LTR MaLR -2 448 80 1576 171 20 13 chr6 13566344 13566642 -168848600 + AluJo SINE Alu 1 300 -12 442 136 0 23 chr6 13567079 13567167 -168848075 + (TTC)n Simple_repeat Simple_repeat 2 87 0 1048 280 46 52 chr6 13567264 13567332 -168847910 + L2 LINE L2 2562 2629 -684 2420 120 3 15 chr6 13567332 13567673 -168847569 + MER1B DNA MER1_type 1 337 0 1048 280 46 52 chr6 13567673 13568360 -168846882 + L2 LINE L2 2629 3307 -6 505 262 76 17 chr6 13569153 13569325 -168845917 + MIR SINE MIR 30 211 -51 193 323 219 10 chr6 13570453 13570645 -168844597 - MIR SINE MIR -14 248 17 2113 130 0 0 chr6 13571676 13571976 -168843266 + AluSx SINE Alu 1 300 -12 416 198 21 21 chr6 13572313 13572409 -168842833 + L2 LINE L2 3177 3272 0 2451 93 0 3 chr6 13572524 13572836 -168842406 - AluSq SINE Alu -2 311 1 458 290 80 0 chr6 13573087 13573249 -168841993 - MER5B DNA MER1_type -3 175 1 306 0 0 0 chr6 13575052 13575086 -168840156 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2456 87 0 3 chr6 13575086 13575407 -168839835 - L1PA7 LINE L1 -18 6136 5817 234 281 79 107 chr6 13576207 13576627 -168838615 + L2 LINE L2 2854 3261 -11 1571 155 0 20 chr6 13577803 13578055 -168837187 + AluJb SINE Alu 40 286 -26 289 282 14 0 chr6 13578748 13578819 -168836423 + GA-rich Low_complexity Low_complexity 4 75 0 2347 96 0 3 chr6 13578846 13579149 -168836093 - AluSx SINE Alu -10 302 1 944 148 35 79 chr6 13579260 13579489 -168835753 + MER20 DNA MER1_type 1 219 0 1947 159 0 0 chr6 13579494 13579789 -168835453 + AluSx SINE Alu 1 295 -17 711 271 67 4 chr6 13580416 13580656 -168834586 + MIR SINE MIR 8 262 0 2078 95 56 7 chr6 13581619 13581904 -168833338 + AluSq SINE Alu 1 299 -14 181 294 0 0 chr6 13582182 13582233 -168833009 + MIR SINE MIR 103 153 -109 532 249 55 12 chr6 13582400 13582565 -168832677 - MER5B DNA MER1_type -3 175 4 280 296 88 32 chr6 13582784 13582909 -168832333 - L2 LINE L2 -4 3268 3137 320 231 132 50 chr6 13583949 13584070 -168831172 - MLT1K LTR MaLR -97 491 361 281 300 111 67 chr6 13584148 13584328 -168830914 - MLT1K LTR MaLR -340 248 61 605 305 26 4 chr6 13585407 13585640 -168829602 - L3 LINE CR1 -145 1432 1195 226 316 21 11 chr6 13585893 13585988 -168829254 - L2 LINE L2 -192 3080 2985 255 149 0 43 chr6 13588102 13588149 -168827093 - MIR SINE MIR -116 146 102 2258 95 0 7 chr6 13589334 13589653 -168825589 - AluSx SINE Alu 0 317 1 1964 156 0 7 chr6 13590024 13590326 -168824916 + AluJb SINE Alu 1 300 -12 1937 105 9 93 chr6 13591313 13591647 -168823595 - AluSx SINE Alu -2 310 5 327 334 150 3 chr6 13591673 13592026 -168823216 + L2 LINE L2 2035 2439 -875 288 165 78 58 chr6 13592038 13592141 -168823101 - LTR41 LTR ERVL -15 758 654 594 221 138 28 chr6 13592548 13592577 -168822665 - LTR41 LTR ERVL -572 201 177 2197 131 0 3 chr6 13592577 13592889 -168822353 + AluSx SINE Alu 1 311 -1 594 221 138 28 chr6 13592889 13593040 -168822202 - LTR41 LTR ERVL -596 177 1 325 164 44 214 chr6 13593343 13593502 -168821740 + L1MC2 LINE L1 6205 6336 -8 368 325 128 47 chr6 13593677 13593975 -168821267 + L2 LINE L2 2951 3272 0 1503 189 18 18 chr6 13594824 13595104 -168820138 + AluJo SINE Alu 1 280 -32 21 0 0 0 chr6 13596332 13596353 -168818889 + AT_rich Low_complexity Low_complexity 1 21 0 839 111 0 0 chr6 13596365 13596473 -168818769 - AluJb SINE Alu -196 116 9 2382 100 0 0 chr6 13596494 13596794 -168818448 - AluSg SINE Alu -10 300 1 209 311 112 54 chr6 13597228 13597469 -168817773 + MIR SINE MIR 8 262 0 520 270 132 0 chr6 13598389 13598541 -168816701 + MER96 DNA MER1_type 1 172 -3 186 256 122 49 chr6 13598543 13598625 -168816617 - MIR SINE MIR -168 94 7 197 317 69 0 chr6 13598672 13598773 -168816469 - L2 LINE L2 -17 3296 3189 1113 94 6 11 chr6 13598804 13598984 -168816258 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 692 177 23 6 chr6 13598986 13599161 -168816081 + GA-rich Low_complexity Low_complexity 1 178 0 222 174 0 0 chr6 13599174 13599220 -168816022 + GA-rich Low_complexity Low_complexity 1 46 0 339 353 7 20 chr6 13599477 13599627 -168815615 + MIR3 SINE MIR 23 170 -38 192 216 0 0 chr6 13601547 13601598 -168813644 + (TA)n Simple_repeat Simple_repeat 1 51 0 2459 80 0 3 chr6 13601847 13602148 -168813094 + AluY SINE Alu 2 301 -10 205 317 168 18 chr6 13604229 13604396 -168810846 + L2 LINE L2 2868 3059 -213 354 243 29 18 chr6 13604455 13604600 -168810642 + MER91A DNA MER1_type 3 188 -2 586 301 98 5 chr6 13604800 13605003 -168810239 - MIR SINE MIR -30 232 11 345 140 0 0 chr6 13605943 13606000 -168809242 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 465 179 0 11 chr6 13606286 13606381 -168808861 + MER5B DNA MER1_type 85 178 0 845 260 40 37 chr6 13606455 13606751 -168808491 + LTR16A1 LTR ERVL 159 455 -2 25 0 0 0 chr6 13607315 13607340 -168807902 + AT_rich Low_complexity Low_complexity 1 25 0 1560 195 3 10 chr6 13607399 13607697 -168807545 - AluJo SINE Alu -16 296 1 1691 95 0 5 chr6 13608122 13608333 -168806909 + AluSx SINE Alu 1 210 -102 235 48 0 0 chr6 13608335 13608377 -168806865 + AluSx SINE Alu 262 303 0 535 337 93 11 chr6 13608532 13608802 -168806440 - MLT1J LTR MaLR -177 334 43 934 202 22 0 chr6 13609296 13609479 -168805763 + MER5A DNA MER1_type 1 187 -2 455 312 23 6 chr6 13610059 13610232 -168805010 - MIR SINE MIR -46 216 41 1977 143 0 23 chr6 13610288 13610596 -168804646 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 13610702 13610723 -168804519 + AT_rich Low_complexity Low_complexity 1 21 0 1570 220 34 63 chr6 13611298 13611775 -168803467 - MLT1C LTR MaLR 0 467 5 2347 121 0 0 chr6 13611907 13612213 -168803029 + AluSx SINE Alu 1 306 -6 517 212 163 22 chr6 13612303 13612487 -168802755 + MIR SINE MIR 53 262 0 2335 114 0 0 chr6 13612591 13612897 -168802345 - AluSx SINE Alu -6 306 1 210 71 0 0 chr6 13612982 13613010 -168802232 + (TG)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr6 13613655 13613680 -168801562 + AT_rich Low_complexity Low_complexity 1 25 0 841 73 28 0 chr6 13614710 13614819 -168800423 - AluSp/q SINE Alu -18 295 184 673 220 52 47 chr6 13614841 13615073 -168800169 - L2 LINE L2 -73 3240 3008 2017 136 3 0 chr6 13615172 13615467 -168799775 + AluSx SINE Alu 1 296 -16 315 213 133 100 chr6 13615519 13615669 -168799573 - MIR SINE MIR -49 213 59 759 199 18 6 chr6 13615891 13615910 -168799332 - L1MA10 LINE L1 0 6334 6316 1872 233 25 17 chr6 13615910 13616391 -168798851 - L1ME1 LINE L1 -10 6156 5672 184 224 35 17 chr6 13616823 13616881 -168798361 + MIR SINE MIR 84 142 -66 2183 107 3 0 chr6 13617115 13617404 -168797838 - AluSx SINE Alu -22 290 1 1242 128 0 0 chr6 13617466 13617646 -168797596 - AluSg SINE Alu -12 300 121 693 109 42 34 chr6 13617699 13617818 -168797424 - AluSg SINE Alu -181 129 10 478 141 0 0 chr6 13617820 13617898 -168797344 - AluS SINE Alu -4 307 230 1564 102 0 0 chr6 13617898 13618095 -168797147 - AluSc SINE Alu -112 197 1 1919 174 0 0 chr6 13618106 13618400 -168796842 - AluJb SINE Alu -18 294 1 708 209 20 70 chr6 13619040 13619241 -168796001 - MLT1J LTR MaLR -82 429 239 3945 165 24 11 chr6 13670516 13671255 -168743987 + L1MB2 LINE L1 5422 6170 -1 207 100 0 0 chr6 13672170 13672200 -168743042 + (T)n Simple_repeat Simple_repeat 1 30 0 586 287 22 22 chr6 13674121 13674393 -168740849 + AluSg1 SINE Alu 36 307 -2 1612 70 0 0 chr6 13675203 13675389 -168739853 - AluSg/x SINE Alu -20 290 105 258 146 0 0 chr6 13675389 13675430 -168739812 - Alu SINE Alu -260 41 1 196 337 122 20 chr6 13675458 13675556 -168739686 - MER5A DNA MER1_type -75 114 7 1587 137 3 51 chr6 13675674 13675966 -168739276 + AluSq SINE Alu 35 312 -1 2254 99 20 0 chr6 13677479 13677771 -168737471 - AluSq SINE Alu -12 301 4 546 226 22 7 chr6 13678364 13678501 -168736741 + MIR SINE MIR 123 261 -1 272 335 27 49 chr6 13678605 13678790 -168736452 - L2 LINE L2 -219 3053 2873 259 308 43 26 chr6 13679208 13679325 -168735917 - L2 LINE L2 -568 2746 2628 1927 141 60 110 chr6 13679987 13680440 -168734802 - MSTB1 LTR MaLR 0 432 3 3659 148 17 22 chr6 13681399 13682002 -168733240 - MER6A DNA MER2_type -5 600 1 252 238 0 0 chr6 13682031 13682094 -168733148 + (CA)n Simple_repeat Simple_repeat 2 64 0 210 71 0 0 chr6 13682586 13682614 -168732628 + (G)n Simple_repeat Simple_repeat 1 28 0 2137 125 0 7 chr6 13683051 13683347 -168731895 - AluSc SINE Alu -15 294 1 297 274 35 53 chr6 13683348 13683461 -168731781 - MIR SINE MIR -98 164 54 309 285 65 32 chr6 13684287 13684410 -168730832 - MER5B DNA MER1_type -50 128 2 2134 110 4 0 chr6 13684825 13685135 -168730107 + AluSx SINE Alu 1 311 0 184 307 114 43 chr6 13685493 13685633 -168729609 - L2 LINE L2 -6 3266 3117 286 334 208 25 chr6 13685847 13686371 -168728871 - L2 LINE L2 -411 2903 2284 338 262 107 0 chr6 13686782 13686904 -168728338 - MIR SINE MIR -64 198 64 2116 114 10 7 chr6 13687107 13687397 -168727845 - AluSg SINE Alu -18 292 2 435 339 18 0 chr6 13687404 13687572 -168727670 - MER5A DNA MER1_type -6 183 13 212 282 101 34 chr6 13687663 13687749 -168727493 + MIR SINE MIR 71 150 -112 1301 108 33 75 chr6 13687749 13687989 -168727253 - MER30 DNA MER1_type 0 230 1 212 282 101 34 chr6 13687989 13688051 -168727191 + MIR SINE MIR 150 229 -33 192 250 0 0 chr6 13688359 13688395 -168726847 + L2 LINE L2 3266 3301 -12 400 238 19 0 chr6 13688475 13688580 -168726662 + MER5A DNA MER1_type 10 116 -73 1177 34 0 27 chr6 13688817 13688966 -168726276 + L1PA5 LINE L1 6010 6154 0 331 314 45 0 chr6 13688968 13689127 -168726115 + MIR SINE MIR 35 198 -58 317 216 137 93 chr6 13689149 13689288 -168725954 + MER91A DNA MER1_type 52 196 0 2287 117 0 0 chr6 13689790 13690097 -168725145 + AluSg SINE Alu 1 307 -3 2259 106 3 3 chr6 13690728 13691031 -168724211 - AluSx SINE Alu -9 303 1 1056 141 38 0 chr6 13691714 13691898 -168723344 - L1MA7 LINE L1 -6 6285 6095 2325 85 0 20 chr6 13692094 13692389 -168722853 - AluSc SINE Alu -20 289 1 1577 196 3 7 chr6 13692824 13693109 -168722133 + AluJo SINE Alu 1 284 -28 252 0 0 0 chr6 13693126 13693154 -168722088 + (TA)n Simple_repeat Simple_repeat 1 28 0 272 214 0 0 chr6 13693706 13693762 -168721480 - L2 LINE L2 -60 3253 3198 188 295 253 0 chr6 13693843 13693938 -168721304 - L3 LINE CR1 -1027 550 432 205 337 64 41 chr6 13694095 13694267 -168720975 + L2 LINE L2 2884 3059 -213 1599 228 66 24 chr6 13694717 13695169 -168720073 + MER74B LTR ERVL 69 539 -83 1414 204 34 67 chr6 13696013 13696177 -168719065 + MLT1A2 LTR MaLR 1 169 -205 2067 112 3 42 chr6 13696177 13696490 -168718752 + AluSx SINE Alu 1 301 -11 1414 204 34 67 chr6 13696490 13696712 -168718530 + MLT1A2 LTR MaLR 169 374 0 2104 133 0 3 chr6 13696814 13697115 -168718127 + AluJb SINE Alu 1 300 -12 367 329 43 6 chr6 13697151 13697315 -168717927 + MIR SINE MIR 13 182 -80 201 314 59 52 chr6 13698835 13698988 -168716254 + L2 LINE L2 2633 2786 -528 3596 116 17 17 chr6 13699278 13699805 -168715437 + MER1A DNA MER1_type 1 527 0 316 267 100 0 chr6 13699919 13700039 -168715203 + L1ME LINE L1 5558 5689 -432 213 243 14 40 chr6 13701904 13701978 -168713264 + GA-rich Low_complexity Low_complexity 6 77 0 22 35 0 0 chr6 13703547 13703576 -168711666 + AT_rich Low_complexity Low_complexity 1 29 0 2447 69 3 0 chr6 13704292 13704581 -168710661 - AluSp SINE Alu -23 290 1 32 26 0 0 chr6 13704591 13704630 -168710612 + AT_rich Low_complexity Low_complexity 1 39 0 587 104 21 0 chr6 13706787 13706883 -168708359 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 23 0 0 0 chr6 13707056 13707079 -168708163 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr6 13707090 13707130 -168708112 + (CA)n Simple_repeat Simple_repeat 2 41 0 186 43 0 0 chr6 13707272 13707295 -168707947 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1881 143 0 7 chr6 13707297 13707584 -168707658 - AluJb SINE Alu -27 285 1 863 206 10 36 chr6 13707924 13708118 -168707124 - MER5A DNA MER1_type 0 189 1 333 273 0 0 chr6 13709071 13709159 -168706083 - L1MC4 LINE L1 -1340 6702 6615 222 143 0 0 chr6 13709159 13709208 -168706034 + (GA)n Simple_repeat Simple_repeat 1 49 0 1406 150 105 20 chr6 13709219 13709466 -168705776 - AluJo SINE Alu -34 278 11 23 0 0 0 chr6 13709851 13709874 -168705368 + AT_rich Low_complexity Low_complexity 1 23 0 192 360 10 10 chr6 13711114 13711214 -168704028 + MIR3 SINE MIR 97 196 -12 24 0 0 0 chr6 13711411 13711435 -168703807 + AT_rich Low_complexity Low_complexity 1 24 0 264 316 132 6 chr6 13711613 13711787 -168703455 - MIR SINE MIR -6 256 61 234 91 0 0 chr6 13711799 13711832 -168703410 + (GA)n Simple_repeat Simple_repeat 2 34 0 1953 92 4 11 chr6 13712563 13712825 -168702417 + AluSc SINE Alu 19 278 -31 437 135 40 0 chr6 13713291 13713365 -168701877 + MADE1 DNA Mariner 1 77 -3 2274 92 3 3 chr6 13714489 13714782 -168700460 + AluSq SINE Alu 1 293 -20 773 272 19 5 chr6 13714853 13715059 -168700183 - MER3 DNA MER1_type 0 209 1 486 250 250 19 chr6 13716321 13716581 -168698661 + MLT1L LTR MaLR 215 534 -81 196 289 33 0 chr6 13716585 13716675 -168698567 - L2 LINE L2 0 3313 3221 659 321 79 43 chr6 13716857 13717595 -168697647 + L2 LINE L2 1932 2695 -619 421 334 49 37 chr6 13717756 13718106 -168697136 + L2 LINE L2 2919 3272 0 22 0 0 0 chr6 13718619 13718641 -168696601 + AT_rich Low_complexity Low_complexity 1 22 0 1012 229 112 0 chr6 13719599 13719813 -168695429 - MER8 DNA MER2_type 0 239 2 644 272 63 60 chr6 13720084 13720657 -168694585 - L2 LINE L2 -19 3294 2708 572 320 42 26 chr6 13720832 13721141 -168694101 + L2 LINE L2 3000 3313 0 539 286 182 16 chr6 13722706 13722898 -168692344 - MIR SINE MIR -38 224 1 302 292 163 22 chr6 13723035 13723213 -168692029 - L2 LINE L2 -3 3310 3108 2199 108 7 0 chr6 13723301 13723596 -168691646 - AluSx SINE Alu -15 297 1 215 319 78 26 chr6 13723602 13723718 -168691524 - L2 LINE L2 -18 3254 3133 247 250 25 12 chr6 13724052 13724132 -168691110 + L3b LINE CR1 1296 1376 -207 1939 116 25 0 chr6 13724133 13724257 -168690985 + AluSx SINE Alu 1 120 -192 282 29 0 0 chr6 13724257 13724292 -168690950 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1939 116 25 0 chr6 13724292 13724472 -168690770 + AluSx SINE Alu 120 312 0 181 157 0 39 chr6 13725207 13725258 -168689984 + GA-rich Low_complexity Low_complexity 2 50 0 800 137 7 43 chr6 13725292 13725431 -168689811 + AluJo SINE Alu 2 135 -177 5679 124 70 18 chr6 13725758 13726685 -168688557 - Tigger1 DNA MER2_type -1443 975 1 2411 240 69 13 chr6 13727531 13728157 -168687085 - MER67B LTR ERV1 0 661 1 476 139 38 0 chr6 13728157 13728236 -168687006 - MER31B LTR ERV1 -384 82 1 657 215 60 52 chr6 13730000 13730233 -168685009 - MER39 LTR ERV1 0 707 473 447 276 25 80 chr6 13730856 13730976 -168684266 - MER5A DNA MER1_type -21 168 58 2142 167 74 26 chr6 13730976 13731354 -168683888 - MSTD LTR MaLR 0 396 1 447 276 25 80 chr6 13731354 13731396 -168683846 - MER5A DNA MER1_type -131 58 15 800 236 20 92 chr6 13733536 13733729 -168681513 - L1MD3 LINE L1 -8 7987 7829 2170 131 0 3 chr6 13733729 13734035 -168681207 + AluSx SINE Alu 1 305 -7 800 236 20 92 chr6 13734035 13734189 -168681053 - L1MD3 LINE L1 -166 7829 7665 1558 187 15 4 chr6 13735033 13735306 -168679936 + AluJo SINE Alu 7 282 -30 603 209 79 70 chr6 13735442 13735657 -168679585 - MER21B LTR ERV1 -149 714 498 2928 106 30 2 chr6 13735679 13736112 -168679130 - LTR56 LTR ERV1 0 445 1 996 169 18 114 chr6 13736121 13736393 -168678849 - L1MEc LINE L1 -1899 4316 4071 1284 181 4 9 chr6 13736393 13736620 -168678622 - AluJo SINE Alu -1 311 86 4350 231 48 67 chr6 13736620 13737064 -168678178 - L1MEc LINE L1 -2143 4072 3621 1653 178 25 4 chr6 13737064 13737339 -168677903 - AluJo SINE Alu -31 281 1 4350 231 48 67 chr6 13737339 13739761 -168675481 - L1MEc LINE L1 -2594 3621 1059 309 26 0 0 chr6 13739761 13739799 -168675443 + (TG)n Simple_repeat Simple_repeat 2 39 0 4350 231 48 67 chr6 13739799 13740809 -168674433 - L1MEc LINE L1 -5156 1059 32 233 241 0 0 chr6 13740836 13740890 -168674352 + T-rich Low_complexity Low_complexity 1 54 0 361 242 148 53 chr6 13740893 13741336 -168673906 - L1MC/D LINE L1 -305 5816 5357 360 283 204 27 chr6 13741338 13741745 -168673497 - HAL1 LINE L1 0 2507 2029 6411 85 26 13 chr6 13741806 13743020 -168672222 - L1PA13 LINE L1 -3 6160 4935 815 151 0 0 chr6 13743027 13743146 -168672096 + FRAM SINE Alu 46 164 -12 399 319 68 16 chr6 13743146 13743394 -168671848 + L1 LINE L1 3384 3644 -2502 362 273 69 49 chr6 13743402 13743760 -168671482 + L1 LINE L1 3854 4213 -1933 957 207 4 80 chr6 13744523 13744760 -168670482 + MER20 DNA MER1_type 1 219 0 460 264 185 35 chr6 13744792 13745019 -168670223 - MIR SINE MIR 0 262 2 199 188 0 0 chr6 13745034 13745066 -168670176 - MIR SINE MIR -55 153 122 237 65 0 0 chr6 13745305 13745336 -168669906 + (TC)n Simple_repeat Simple_repeat 1 31 0 448 247 112 34 chr6 13745420 13745598 -168669644 - LTR16C LTR ERVL 0 491 300 202 204 23 0 chr6 13746350 13746394 -168668848 - MIR SINE MIR 0 262 218 340 268 62 67 chr6 13746433 13746642 -168668600 + L1ME3A LINE L1 5961 6168 -2 591 235 47 20 chr6 13746704 13746853 -168668389 - MIR SINE MIR -46 216 64 2339 109 3 0 chr6 13748399 13748703 -168666539 - AluSg SINE Alu -5 305 1 483 282 119 13 chr6 13748724 13748951 -168666291 + MIR SINE MIR 2 252 -10 188 171 29 29 chr6 13750133 13750203 -168665039 + CT-rich Low_complexity Low_complexity 3 72 0 752 218 26 13 chr6 13751195 13751351 -168663891 + MIR SINE MIR 13 170 -92 203 404 35 0 chr6 13751498 13751669 -168663573 - L2 LINE L2 -503 2811 2635 226 259 0 0 chr6 13751867 13751921 -168663321 + (TA)n Simple_repeat Simple_repeat 1 54 0 1041 219 5 9 chr6 13754551 13754766 -168660476 - MLT1A2 LTR MaLR -11 363 150 359 217 155 87 chr6 13754917 13755124 -168660118 + L1PBa LINE L1 740 960 -2263 26 50 0 0 chr6 13755490 13755530 -168659712 + AT_rich Low_complexity Low_complexity 1 40 0 1984 150 0 7 chr6 13755579 13755873 -168659369 + AluJb SINE Alu 3 294 -18 24 53 0 0 chr6 13755960 13755998 -168659244 + AT_rich Low_complexity Low_complexity 1 38 0 623 316 67 10 chr6 13756577 13756770 -168658472 - MIR SINE MIR -44 218 15 3127 147 32 26 chr6 13756796 13757215 -168658027 - MER34 LTR ERV1 -1 541 117 1891 142 10 10 chr6 13757215 13757517 -168657725 + AluJo SINE Alu 1 302 -10 3127 147 32 26 chr6 13757517 13757635 -168657607 - MER34 LTR ERV1 -425 117 1 1964 90 181 12 chr6 13757770 13758091 -168657151 - THE1C LTR MaLR 0 375 1 8677 202 23 17 chr6 13758112 13761056 -168654186 + L1PBa LINE L1 1648 4673 -2189 276 100 0 0 chr6 13761059 13761099 -168654143 + (TA)n Simple_repeat Simple_repeat 2 41 0 504 86 0 0 chr6 13761109 13761179 -168654063 + (CA)n Simple_repeat Simple_repeat 2 71 0 2338 133 3 16 chr6 13761179 13761542 -168653700 + L1PB1 LINE L1 5794 6151 0 710 233 57 5 chr6 13762497 13762690 -168652552 - Tigger1 DNA MER2_type -7 2411 2209 213 385 0 0 chr6 13762864 13763030 -168652212 + G-rich Low_complexity Low_complexity 1 166 0 879 161 310 41 chr6 13763626 13763868 -168651374 - AluJo SINE Alu 0 312 6 1800 153 4 4 chr6 13763878 13764152 -168651090 - AluJo SINE Alu 0 312 39 23 0 0 0 chr6 13764157 13764180 -168651062 + AT_rich Low_complexity Low_complexity 1 23 0 1905 158 0 16 chr6 13765793 13766096 -168649146 + AluSx SINE Alu 1 298 -14 475 36 0 0 chr6 13767857 13767913 -168647329 + AluY SINE Alu 2 57 -256 2084 138 0 10 chr6 13768391 13768702 -168646540 + AluSx SINE Alu 1 308 -4 473 217 148 57 chr6 13770037 13770281 -168644961 + L1MC5 LINE L1 7664 7929 -32 181 211 73 128 chr6 13770352 13770461 -168644781 + MIR SINE MIR 37 139 -69 2249 96 3 7 chr6 13771349 13771651 -168643591 + AluSx SINE Alu 2 302 -10 23 0 0 0 chr6 13771664 13771687 -168643555 + AT_rich Low_complexity Low_complexity 1 23 0 1697 152 58 32 chr6 13771854 13772163 -168643079 - MER2 DNA MER2_type -27 318 2 540 251 61 39 chr6 13772204 13772435 -168642807 + L1ME LINE L1 5371 5606 -560 527 296 17 11 chr6 13772635 13772811 -168642431 - MER5B DNA MER1_type -1 177 1 1940 76 64 0 chr6 13772912 13773176 -168642066 + AluY SINE Alu 26 306 -5 9708 55 7 111 chr6 13773684 13775230 -168640012 + SVA Other Other 2 1386 0 321 343 114 6 chr6 13775239 13775405 -168639837 - MIR SINE MIR -77 185 2 213 180 40 20 chr6 13776058 13776108 -168639134 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr6 13776124 13776146 -168639096 + AT_rich Low_complexity Low_complexity 1 22 0 778 150 7 54 chr6 13776156 13776303 -168638939 + FLAM_C SINE Alu 2 141 -2 5690 124 70 18 chr6 13776620 13777548 -168637694 - Tigger1 DNA MER2_type -1442 976 1 2411 240 69 13 chr6 13778393 13779019 -168636223 - MER67B LTR ERV1 0 661 1 476 139 38 0 chr6 13779019 13779098 -168636144 - MER31B LTR ERV1 -384 82 1 1062 239 52 0 chr6 13779629 13779842 -168635400 + MER58A DNA MER1_type 1 224 0 4180 157 28 15 chr6 13780497 13781236 -168634006 + L1MB2 LINE L1 5422 6170 -1 216 97 0 0 chr6 13782137 13782168 -168633074 + (T)n Simple_repeat Simple_repeat 1 31 0 1613 110 0 5 chr6 13782610 13782828 -168632414 - AluSx SINE Alu -95 217 1 1908 214 13 5 chr6 13782863 13783261 -168631981 - L1M4 LINE L1 -1028 5118 4718 477 276 20 30 chr6 13783237 13783440 -168631802 + L1M4 LINE L1 3419 3619 -2527 * 2740 112 14 12 chr6 13783442 13783861 -168631381 + L1MA2 LINE L1 5885 6304 0 353 155 272 10 chr6 13783887 13783990 -168631252 - MER5A DNA MER1_type -6 183 54 1986 258 35 18 chr6 13784096 13785040 -168630202 + L1M4 LINE L1 3599 4655 -1491 1160 136 0 28 chr6 13785040 13785216 -168630026 + AluJb SINE Alu 132 302 -10 414 346 64 4 chr6 13785219 13785499 -168629743 + L1M4 LINE L1 4650 4946 -1200 1368 217 67 59 chr6 13785927 13786314 -168628928 + MLT1B LTR MaLR 1 390 0 365 288 203 28 chr6 13786497 13786674 -168628568 + MIR SINE MIR 34 241 -21 525 239 33 77 chr6 13788210 13788463 -168626779 - L1ME3A LINE L1 -2 6168 5928 443 181 59 34 chr6 13788471 13788617 -168626625 - L1ME3A LINE L1 -196 5968 5814 319 272 164 28 chr6 13788599 13788886 -168626356 - L1MC5 LINE L1 -25 7936 7611 * 427 256 91 0 chr6 13789680 13789801 -168625441 + MER103 DNA DNA 34 165 -1 1686 98 31 9 chr6 13790124 13790349 -168624893 - MER30 DNA MER1_type 0 230 1 1739 164 18 0 chr6 13790471 13790772 -168624470 + AluJb SINE Alu 1 306 0 474 333 24 0 chr6 13791841 13792051 -168623191 + L1ME3A LINE L1 5611 5825 -345 2159 115 0 3 chr6 13792457 13792753 -168622489 + AluSx SINE Alu 1 295 -17 2539 204 62 6 chr6 13793099 13793627 -168621615 - MER74A LTR ERVL 0 558 1 536 203 16 24 chr6 13794380 13794503 -168620739 - L1MB7 LINE L1 -9 6175 6054 1968 123 29 4 chr6 13794561 13794864 -168620378 - AluSx SINE Alu 0 310 1 26 0 0 0 chr6 13794951 13794977 -168620265 + AT_rich Low_complexity Low_complexity 1 26 0 2383 175 73 2 chr6 13795478 13795900 -168619342 + LTR47A LTR ERVL 1 452 0 2248 99 0 0 chr6 13796014 13796306 -168618936 + AluSg SINE Alu 1 292 -18 372 268 102 0 chr6 13796504 13796631 -168618611 + MIR SINE MIR 59 198 -64 426 310 172 65 chr6 13797042 13797920 -168617322 + L2 LINE L2 2284 3266 -6 2111 110 4 0 chr6 13798278 13798588 -168616654 - AluSx SINE Alu 0 311 1 346 268 65 32 chr6 13799003 13799126 -168616116 + MER5B DNA MER1_type 2 128 -50 210 255 0 153 chr6 13799126 13799224 -168616018 - MIR SINE MIR -90 118 36 330 274 35 53 chr6 13799952 13800065 -168615177 + MIR SINE MIR 54 164 -98 2139 125 0 3 chr6 13800066 13800361 -168614881 + AluSc SINE Alu 1 294 -15 186 43 0 0 chr6 13801102 13801125 -168614117 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1994 130 7 0 chr6 13801399 13801684 -168613558 - AluJb SINE Alu -25 287 1 181 157 0 39 chr6 13801717 13801768 -168613474 + CT-rich Low_complexity Low_complexity 2 50 0 1938 116 25 0 chr6 13802498 13802678 -168612564 - AluSx SINE Alu 0 312 120 282 29 0 0 chr6 13802678 13802713 -168612529 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1938 116 25 0 chr6 13802713 13802837 -168612405 - AluSx SINE Alu -192 120 1 247 250 25 12 chr6 13802838 13802918 -168612324 - L3b LINE CR1 -207 1376 1296 215 319 78 26 chr6 13803252 13803368 -168611874 + L2 LINE L2 3133 3254 -18 2199 108 7 0 chr6 13803374 13803669 -168611573 + AluSx SINE Alu 1 297 -15 302 292 163 22 chr6 13803757 13803935 -168611307 + L2 LINE L2 3108 3310 -3 539 286 182 16 chr6 13804072 13804264 -168610978 + MIR SINE MIR 1 224 -38 674 323 42 22 chr6 13805829 13806142 -168609100 - L2 LINE L2 0 3313 2995 852 273 63 59 chr6 13806309 13806900 -168608342 + L2 LINE L2 2708 3313 0 1007 229 112 0 chr6 13807151 13807365 -168607877 + MER8 DNA MER2_type 2 239 0 194 308 33 67 chr6 13807404 13807524 -168607718 - MIR3 SINE MIR -21 187 72 22 0 0 0 chr6 13808323 13808345 -168606897 + AT_rich Low_complexity Low_complexity 1 22 0 824 319 89 53 chr6 13808858 13810105 -168605137 - L2 LINE L2 0 3272 1932 224 289 33 0 chr6 13810287 13810377 -168604865 + L2 LINE L2 3221 3313 0 490 254 250 19 chr6 13810381 13810641 -168604601 - MLT1L LTR MaLR -81 534 215 814 272 19 5 chr6 13811903 13812109 -168603133 + MER3 DNA MER1_type 1 209 0 2255 92 3 3 chr6 13812180 13812473 -168602769 - AluSq SINE Alu -20 293 1 460 135 40 0 chr6 13813593 13813667 -168601575 - MADE1 DNA Mariner -3 77 1 1934 92 4 11 chr6 13814133 13814395 -168600847 - AluSc SINE Alu -31 278 19 234 91 0 0 chr6 13815123 13815156 -168600086 + (TC)n Simple_repeat Simple_repeat 2 34 0 314 305 132 6 chr6 13815168 13815342 -168599900 + MIR SINE MIR 61 256 -6 24 0 0 0 chr6 13815520 13815544 -168599698 + AT_rich Low_complexity Low_complexity 1 24 0 201 354 101 28 chr6 13815741 13815919 -168599323 - MIR3 SINE MIR -12 196 6 23 0 0 0 chr6 13817065 13817088 -168598154 + AT_rich Low_complexity Low_complexity 1 23 0 1381 162 97 12 chr6 13817472 13817719 -168597523 + AluJo SINE Alu 11 278 -34 222 143 0 0 chr6 13817730 13817779 -168597463 + (TC)n Simple_repeat Simple_repeat 1 49 0 346 273 0 0 chr6 13817779 13817867 -168597375 + L1MC4 LINE L1 6615 6702 -1340 923 206 10 36 chr6 13818820 13819014 -168596228 + MER5A DNA MER1_type 1 189 0 1918 147 0 0 chr6 13819353 13819663 -168595579 + AluJb SINE Alu 1 310 0 360 0 0 0 chr6 13819805 13819845 -168595397 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr6 13819856 13819879 -168595363 + AT_rich Low_complexity Low_complexity 1 23 0 623 100 20 0 chr6 13820052 13820152 -168595090 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 32 26 0 0 chr6 13822302 13822341 -168592901 + AT_rich Low_complexity Low_complexity 1 39 0 2425 69 3 0 chr6 13822351 13822640 -168592602 + AluSp SINE Alu 1 290 -23 22 35 0 0 chr6 13823356 13823385 -168591857 + AT_rich Low_complexity Low_complexity 1 29 0 236 230 14 40 chr6 13824951 13825025 -168590217 + CT-rich Low_complexity Low_complexity 6 77 0 250 272 61 18 chr6 13826670 13826784 -168588458 - L1ME4a LINE L1 -197 5924 5806 316 267 100 0 chr6 13826874 13826994 -168588248 - L1ME4a LINE L1 -432 5689 5558 3596 116 17 17 chr6 13827108 13827635 -168587607 - MER1A DNA MER1_type 0 527 1 201 314 59 52 chr6 13827925 13828078 -168587164 - L2 LINE L2 -528 2786 2633 367 329 43 6 chr6 13829598 13829762 -168585480 - MIR SINE MIR -80 182 13 2104 133 0 3 chr6 13829798 13830099 -168585143 - AluJb SINE Alu -12 300 1 1425 204 34 67 chr6 13830201 13830423 -168584819 - MLT1A2 LTR MaLR 0 374 169 2171 103 6 39 chr6 13830423 13830734 -168584508 - AluSx SINE Alu -11 301 1 1425 204 34 67 chr6 13830734 13830898 -168584344 - MLT1A2 LTR MaLR -205 169 1 1599 228 66 24 chr6 13831742 13832194 -168583048 - MER74B LTR ERVL -83 539 69 205 337 64 41 chr6 13832644 13832816 -168582426 - L2 LINE L2 -213 3059 2884 188 295 253 0 chr6 13832973 13833068 -168582174 + L3 LINE CR1 432 550 -1027 272 214 0 0 chr6 13833149 13833205 -168582037 + L2 LINE L2 3198 3253 -60 252 0 0 0 chr6 13833757 13833785 -168581457 + (TA)n Simple_repeat Simple_repeat 1 28 0 1635 189 3 7 chr6 13833802 13834087 -168581155 - AluJo SINE Alu -28 284 1 2580 81 0 0 chr6 13834522 13834831 -168580411 + AluSc SINE Alu 1 309 0 1056 141 38 0 chr6 13835007 13835191 -168580051 + L1MA7 LINE L1 6095 6285 -6 2289 108 0 3 chr6 13835874 13836180 -168579062 + AluSx SINE Alu 1 305 -7 2287 117 0 0 chr6 13836811 13837118 -168578124 - AluSg SINE Alu -3 307 1 317 216 137 93 chr6 13837620 13837759 -168577483 - MER91A DNA MER1_type 0 196 52 331 314 45 0 chr6 13837781 13837940 -168577302 - MIR SINE MIR -58 150 35 1177 34 0 27 chr6 13837942 13838091 -168577151 - L1PA5 LINE L1 0 6154 6010 400 238 19 0 chr6 13838328 13838433 -168576809 - MER5A DNA MER1_type -73 116 10 192 250 0 0 chr6 13838513 13838549 -168576693 - L2 LINE L2 -12 3301 3266 242 293 102 20 chr6 13838857 13838919 -168576323 - MIR SINE MIR -33 229 173 1354 101 38 71 chr6 13838919 13839157 -168576085 + MER30 DNA MER1_type 1 230 0 242 293 102 20 chr6 13839157 13839241 -168576001 - MIR SINE MIR -89 173 71 435 339 18 0 chr6 13839331 13839499 -168575743 + MER5A DNA MER1_type 13 183 -6 2381 95 10 3 chr6 13839506 13839812 -168575430 + AluSg SINE Alu 2 309 -1 1612 70 0 0 chr6 13840618 13840804 -168574438 - AluSg/x SINE Alu -20 292 107 275 122 0 0 chr6 13840804 13840845 -168574397 - Alu SINE Alu -259 41 1 219 316 122 20 chr6 13840873 13840971 -168574271 - MER5A DNA MER1_type -75 114 7 1977 93 3 41 chr6 13841085 13841375 -168573867 + AluSq SINE Alu 35 313 0 2254 99 20 0 chr6 13842881 13843173 -168572069 - AluSq SINE Alu -12 301 4 546 226 22 7 chr6 13843765 13843902 -168571340 + MIR SINE MIR 123 261 -1 272 335 27 49 chr6 13844006 13844191 -168571051 - L2 LINE L2 -219 3053 2873 259 308 43 26 chr6 13844609 13844726 -168570516 - L2 LINE L2 -568 2746 2628 1927 141 60 110 chr6 13845388 13845841 -168569401 - MSTB1 LTR MaLR 0 432 3 3659 148 17 22 chr6 13846800 13847403 -168567839 - MER6A DNA MER2_type -5 600 1 252 238 0 0 chr6 13847432 13847495 -168567747 + (CA)n Simple_repeat Simple_repeat 2 64 0 195 42 0 0 chr6 13847985 13848009 -168567233 + (TG)n Simple_repeat Simple_repeat 2 25 0 586 177 234 34 chr6 13848696 13848905 -168566337 + MER5C DNA MER1_type 73 323 -1 396 274 201 38 chr6 13850040 13850328 -168564914 - L3 LINE CR1 -24 1553 1219 1711 182 0 23 chr6 13850401 13850708 -168564534 - AluJb SINE Alu -6 306 7 527 323 14 31 chr6 13850926 13851149 -168564093 + MIR SINE MIR 20 238 -24 213 39 0 0 chr6 13851307 13851333 -168563909 + (T)n Simple_repeat Simple_repeat 1 26 0 1586 55 5 0 chr6 13851525 13851724 -168563518 - L1PB2 LINE L1 -2 6149 5950 914 278 50 20 chr6 13851966 13852284 -168562958 + L2 LINE L2 2393 2727 -587 2161 150 13 20 chr6 13852284 13852677 -168562565 - MLT1B LTR MaLR 0 390 1 914 278 50 20 chr6 13852677 13852758 -168562484 + L2 LINE L2 2727 2804 -510 878 271 61 52 chr6 13853028 13853485 -168561757 + L2 LINE L2 2818 3278 -35 279 0 0 0 chr6 13853488 13853519 -168561723 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 1344 217 47 47 chr6 13853937 13854297 -168560945 + MLT1A1 LTR MaLR 1 360 -5 1414 43 0 0 chr6 13854455 13854619 -168560623 + U1 snRNA snRNA 1 164 -1 293 305 29 9 chr6 13855549 13855654 -168559588 - L2 LINE L2 -8 3305 3199 266 327 18 45 chr6 13856462 13856572 -168558670 + L3 LINE CR1 1470 1576 -1 215 273 0 0 chr6 13856704 13856748 -168558494 + MIR3 SINE MIR 151 194 -14 1168 139 134 19 chr6 13858960 13859169 -168556073 + AluJo SINE Alu 1 233 -79 625 106 32 8 chr6 13859195 13859318 -168555924 + GA-rich Low_complexity Low_complexity 3 128 0 229 280 110 60 chr6 13860310 13860492 -168554750 + MIR SINE MIR 20 210 -52 260 360 28 78 chr6 13861305 13861700 -168553542 - L2 LINE L2 -91 3181 2807 393 270 124 22 chr6 13861905 13862083 -168553159 + MIR SINE MIR 7 202 -60 2305 105 0 0 chr6 13862155 13862450 -168552792 + AluSg1 SINE Alu 1 295 -14 1084 193 22 40 chr6 13863060 13863283 -168551959 + MER20 DNA MER1_type 1 219 0 386 248 144 32 chr6 13863672 13863797 -168551445 - MER58B DNA MER1_type 0 341 203 186 254 42 42 chr6 13863807 13863878 -168551364 - L3 LINE CR1 -487 1090 1020 382 281 43 22 chr6 13864056 13864195 -168551047 + MIR SINE MIR 49 190 -72 343 347 57 10 chr6 13864283 13864476 -168550766 - L3 LINE CR1 -884 693 492 317 276 0 83 chr6 13864493 13864649 -168550593 - L2 LINE L2 -11 3302 3160 2454 85 0 0 chr6 13867139 13867434 -168547808 - AluSc SINE Alu -13 296 2 734 120 17 0 chr6 13867809 13867926 -168547316 - L1MB3 LINE L1 0 6183 6065 397 301 23 45 chr6 13868519 13868695 -168546547 + MIR3 SINE MIR 16 187 -21 434 293 86 17 chr6 13869053 13869285 -168545957 - MIR SINE MIR -3 259 12 1171 172 9 32 chr6 13869556 13869777 -168545465 - MER20 DNA MER1_type -3 216 1 2317 98 20 0 chr6 13870669 13870966 -168544276 + AluSx SINE Alu 1 303 -9 1583 195 4 0 chr6 13871134 13871406 -168543836 + AluJb SINE Alu 1 273 -39 243 143 0 0 chr6 13871406 13871441 -168543801 + (GA)n Simple_repeat Simple_repeat 1 35 0 811 142 24 24 chr6 13871441 13871894 -168543348 + GA-rich Low_complexity Low_complexity 1 453 0 466 264 42 6 chr6 13872161 13872328 -168542914 - MIR SINE MIR -10 252 80 202 200 0 0 chr6 13872349 13872389 -168542853 - MIR SINE MIR -18 244 205 455 282 206 0 chr6 13872405 13872575 -168542667 + MIR SINE MIR 41 245 -17 464 255 138 0 chr6 13872900 13873131 -168542111 - L3 LINE CR1 -111 1466 1204 2023 119 67 25 chr6 13873805 13874165 -168541077 - THE1C LTR MaLR 0 375 1 287 224 0 40 chr6 13875291 13875367 -168539875 + Charlie7 DNA MER1_type 31 103 -2509 2553 181 13 11 chr6 13876744 13877209 -168538033 - MLT1C LTR MaLR 0 467 2 298 308 109 14 chr6 13877287 13877482 -168537760 - Charlie8 DNA MER1_type -1024 1393 95 1699 149 14 17 chr6 13877499 13877787 -168537455 + AluJo SINE Alu 6 292 -20 1846 145 71 0 chr6 13878060 13878384 -168536858 - MER7A DNA MER2_type 0 346 2 207 152 0 0 chr6 13879393 13879439 -168535803 + (CAT)n Simple_repeat Simple_repeat 1 46 0 1779 156 0 7 chr6 13880818 13881146 -168534096 - AluSx SINE Alu 0 326 1 257 291 0 25 chr6 13881278 13881357 -168533885 - MIR SINE MIR -70 192 116 931 168 47 58 chr6 13881700 13881891 -168533351 + MER5A DNA MER1_type 1 189 0 312 231 306 15 chr6 13881906 13882040 -168533202 + MIR SINE MIR 21 193 -69 1990 119 0 39 chr6 13882145 13882455 -168532787 + AluSx SINE Alu 5 302 -10 363 286 20 0 chr6 13882462 13882560 -168532682 - MLT1J2 LTR MaLR -13 437 338 288 256 151 0 chr6 13882632 13882718 -168532524 - MLT1J2 LTR MaLR -285 165 67 186 339 0 0 chr6 13883245 13883307 -168531935 - L2 LINE L2 -1 3312 3251 5754 121 38 18 chr6 13884003 13884413 -168530829 - L1PA15 LINE L1 -23 6142 5742 9047 37 6 9 chr6 13884413 13885486 -168529756 - MER11C LTR ERVK -2 1069 1 5754 121 38 18 chr6 13885486 13886285 -168528957 - L1PA15 LINE L1 -423 5742 4917 311 320 85 11 chr6 13886333 13886514 -168528728 - MIR3 SINE MIR -3 205 11 351 0 0 0 chr6 13887726 13887765 -168527477 + (TG)n Simple_repeat Simple_repeat 1 39 0 2128 93 0 0 chr6 13887765 13888045 -168527197 - AluSq SINE Alu -33 280 1 973 172 0 0 chr6 13888119 13888282 -168526960 + FAM SINE Alu 13 175 -10 1768 142 74 40 chr6 13889513 13889838 -168525404 + MER1B DNA MER1_type 2 337 0 2353 73 7 0 chr6 13889916 13890218 -168525024 + AluSq SINE Alu 1 304 -9 1106 232 5 0 chr6 13890366 13890573 -168524669 + MER58A DNA MER1_type 2 209 -15 23 0 0 0 chr6 13892182 13892205 -168523037 + AT_rich Low_complexity Low_complexity 1 23 0 1703 153 4 4 chr6 13892210 13892484 -168522758 + AluJo SINE Alu 39 312 0 906 155 227 64 chr6 13892493 13892757 -168522485 + AluJo SINE Alu 6 312 0 2125 119 0 19 chr6 13894345 13894663 -168520579 + AluSx SINE Alu 1 312 0 280 306 12 12 chr6 13894847 13894932 -168520310 + 7SK RNA RNA 12 96 -97 418 194 19 39 chr6 13895002 13895105 -168520137 - LTR33 LTR ERVL -3 518 418 * 432 175 12 0 chr6 13895098 13895178 -168520064 - MER117 DNA MER1_type -106 91 11 2647 141 26 5 chr6 13895375 13895794 -168519448 - MSTA LTR MaLR 0 428 1 9479 158 43 2 chr6 13895794 13897381 -168517861 - MSTA-int LTR MaLR 0 1651 1 2850 106 29 2 chr6 13897381 13897798 -168517444 - MSTA LTR MaLR 0 428 1 205 214 0 18 chr6 13897894 13897950 -168517292 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 642 208 79 28 chr6 13898219 13898397 -168516845 - MER5A DNA MER1_type -2 187 1 392 277 68 96 chr6 13898408 13898475 -168516767 - MER5B DNA MER1_type -6 172 105 2197 94 10 0 chr6 13898475 13898774 -168516468 + AluSx SINE Alu 1 302 -10 392 277 68 96 chr6 13898774 13898883 -168516359 - MER5B DNA MER1_type -73 105 1 248 270 25 113 chr6 13899990 13900194 -168515048 - MIR SINE MIR -56 206 21 390 368 25 50 chr6 13900468 13900707 -168514535 - L2 LINE L2 0 3272 3040 237 239 133 53 chr6 13900959 13901105 -168514137 - MIR3 SINE MIR -73 135 5 369 275 93 85 chr6 13901194 13901307 -168513935 - L2 LINE L2 -1330 1984 1873 1025 206 59 0 chr6 13901307 13901511 -168513731 - MER20 DNA MER1_type 0 219 4 369 275 93 85 chr6 13901511 13901761 -168513481 - L2 LINE L2 -1441 1873 1618 281 276 66 0 chr6 13901779 13901855 -168513387 - L2 LINE L2 0 3272 3192 357 228 19 152 chr6 13901855 13902013 -168513229 - MER45A DNA AcHobo -41 137 1 669 279 236 30 chr6 13902244 13902901 -168512341 - L2 LINE L2 -358 2956 2165 316 290 8 81 chr6 13902926 13903050 -168512192 - L2 LINE L2 -15 3298 3184 207 0 0 0 chr6 13903638 13903661 -168511581 + (T)n Simple_repeat Simple_repeat 1 23 0 584 291 82 85 chr6 13904514 13904836 -168510406 + L2 LINE L2 1395 1717 -1597 2154 93 3 3 chr6 13904836 13905127 -168510115 + AluSx SINE Alu 1 291 -21 584 291 82 85 chr6 13905127 13905140 -168510102 + L2 LINE L2 1717 1729 -1585 1559 191 3 3 chr6 13905140 13905422 -168509820 + AluJo SINE Alu 1 282 -30 212 77 26 0 chr6 13905425 13905464 -168509778 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 584 291 82 85 chr6 13905464 13905697 -168509545 + L2 LINE L2 1731 1966 -1348 969 289 111 65 chr6 13906125 13906887 -168508355 + L2 LINE L2 2004 2808 -506 2523 137 44 2 chr6 13906887 13907297 -168507945 - MSTA LTR MaLR 0 428 2 969 289 111 65 chr6 13907297 13907353 -168507889 + L2 LINE L2 2808 2860 -454 455 289 33 110 chr6 13907364 13907665 -168507577 + L2 LINE L2 2995 3272 0 306 0 0 0 chr6 13908238 13908272 -168506970 + (A)n Simple_repeat Simple_repeat 1 34 0 2200 104 0 0 chr6 13908384 13908681 -168506561 + AluSx SINE Alu 1 297 -15 552 222 22 37 chr6 13908775 13908910 -168506332 + MLT1D LTR MaLR 1 133 -372 213 324 14 14 chr6 13908910 13908984 -168506258 + MIR SINE MIR 187 260 -2 283 345 34 34 chr6 13908999 13909118 -168506124 - MIR SINE MIR -68 140 21 2226 212 80 47 chr6 13909937 13909948 -168505294 - MER21B LTR ERV1 -11 852 843 2166 98 0 10 chr6 13909948 13910253 -168504989 + AluSq SINE Alu 1 302 -11 2226 212 80 47 chr6 13910253 13911017 -168504225 - MER21B LTR ERV1 -20 843 1 2178 148 71 34 chr6 13911155 13911403 -168503839 - MSTA LTR MaLR 0 428 158 1592 78 10 0 chr6 13911403 13911609 -168503633 - AluSg/x SINE Alu -5 305 98 2178 148 71 34 chr6 13911609 13911771 -168503471 - MSTA LTR MaLR -270 158 3 1053 174 31 2 chr6 13911908 13912175 -168503067 + MER2 DNA MER2_type 21 345 0 188 35 35 0 chr6 13914296 13914325 -168500917 + (CCCCG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 13915385 13915407 -168499835 + AT_rich Low_complexity Low_complexity 1 22 0 296 287 78 17 chr6 13916053 13916168 -168499074 + MIR3 SINE MIR 84 205 -3 2404 76 0 10 chr6 13916889 13917203 -168498039 + AluSx SINE Alu 1 311 -1 195 314 88 66 chr6 13917494 13917631 -168497611 - MIR3 SINE MIR -67 141 2 1716 161 7 7 chr6 13918071 13918363 -168496879 + AluJo SINE Alu 7 298 -14 1806 156 0 17 chr6 13919075 13919377 -168495865 + AluSx SINE Alu 1 297 -15 459 36 0 0 chr6 13921137 13921193 -168494049 + AluY SINE Alu 2 57 -253 2005 135 0 10 chr6 13921671 13921982 -168493260 + AluSx SINE Alu 1 308 -4 420 224 146 57 chr6 13923323 13923569 -168491673 + L1MC5 LINE L1 7664 7931 -30 187 211 73 128 chr6 13923640 13923749 -168491493 + MIR SINE MIR 37 139 -69 2193 111 3 0 chr6 13924636 13924943 -168490299 + AluSq SINE Alu 2 309 -4 381 75 0 0 chr6 13924943 13924996 -168490246 + (TA)n Simple_repeat Simple_repeat 1 53 0 220 333 0 0 chr6 13927064 13927133 -168488109 - MIR SINE MIR -131 131 63 327 49 0 0 chr6 13928513 13928554 -168486688 + (T)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr6 13929207 13929229 -168486013 + AT_rich Low_complexity Low_complexity 1 22 0 207 69 0 0 chr6 13930855 13930884 -168484358 + (A)n Simple_repeat Simple_repeat 1 29 0 2300 89 7 0 chr6 13931124 13931415 -168483827 - AluSc SINE Alu -16 293 1 1635 106 0 74 chr6 13931482 13931738 -168483504 - AluSx SINE Alu -75 237 1 484 227 169 7 chr6 13931939 13932093 -168483149 - MER5A DNA MER1_type -2 187 9 2237 105 3 0 chr6 13932385 13932681 -168482561 - AluSg SINE Alu -13 297 1 259 299 11 11 chr6 13932915 13933002 -168482240 + MIR3 SINE MIR 113 199 -9 1905 122 3 41 chr6 13933586 13933871 -168481371 + L1PB2 LINE L1 5842 6115 -36 2333 97 0 3 chr6 13933871 13934171 -168481071 + AluSq SINE Alu 1 299 -14 1905 122 3 41 chr6 13934171 13934205 -168481037 + L1PB2 LINE L1 6115 6149 -2 372 287 168 10 chr6 13934817 13935026 -168480216 - MIR SINE MIR -19 243 2 198 0 0 0 chr6 13935796 13935818 -168479424 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1850 133 28 28 chr6 13937626 13937912 -168477330 + AluJo SINE Alu 5 290 -22 213 212 245 22 chr6 13938105 13938207 -168477035 - MIR SINE MIR -62 146 37 616 276 48 97 chr6 13938308 13938681 -168476561 - MLT1J LTR MaLR -1 510 156 237 263 92 0 chr6 13938719 13938795 -168476447 - MLT1L LTR MaLR -517 98 16 473 173 173 13 chr6 13939115 13939271 -168475971 + MER5A DNA MER1_type 9 189 0 243 308 51 26 chr6 13939429 13939546 -168475696 - MIR SINE MIR -1 261 142 242 280 168 28 chr6 13939721 13939864 -168475378 + MIR3 SINE MIR 30 192 -16 208 234 103 75 chr6 13940933 13941040 -168474202 - L2 LINE L2 -8 3305 3196 1065 198 53 20 chr6 13941079 13941326 -168473916 + MLT1A1 LTR MaLR 6 260 -105 197 287 70 42 chr6 13941644 13941787 -168473455 - MIR SINE MIR -50 212 66 229 271 158 38 chr6 13941983 13942116 -168473126 + L2 LINE L2 3123 3271 -1 225 224 45 0 chr6 13943694 13943761 -168471481 + MER21A LTR ERV1 124 193 -738 24 0 0 0 chr6 13944468 13944492 -168470750 + AT_rich Low_complexity Low_complexity 1 24 0 585 261 41 5 chr6 13945750 13945945 -168469297 + MIR SINE MIR 28 229 -33 471 191 11 22 chr6 13948334 13948423 -168466819 + MER81 DNA DNA 27 114 0 351 329 78 88 chr6 13949124 13949419 -168465823 - L2 LINE L2 -8 3264 2973 477 273 14 28 chr6 13949719 13949862 -168465380 + L2 LINE L2 3173 3313 0 319 286 129 0 chr6 13950051 13950222 -168465020 - L1ME4a LINE L1 -104 6017 5825 1481 240 60 23 chr6 13950290 13950727 -168464515 + L1MC4a LINE L1 5352 5804 -2004 2631 77 0 0 chr6 13950754 13951066 -168464176 + AluSx SINE Alu 1 312 0 487 281 31 6 chr6 13951109 13951269 -168463973 + L1MC4a LINE L1 5796 5959 -1849 182 216 0 39 chr6 13952107 13952158 -168463084 - MIR SINE MIR -62 146 98 427 261 43 29 chr6 13952158 13952365 -168462877 + L1ME LINE L1 4635 4844 -1302 231 190 0 0 chr6 13952366 13952424 -168462818 + (TA)n Simple_repeat Simple_repeat 2 59 0 394 167 60 12 chr6 13952503 13952587 -168462655 + MIR SINE MIR 64 151 -111 2310 95 0 16 chr6 13952836 13953142 -168462100 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr6 13953155 13953178 -168462064 + AT_rich Low_complexity Low_complexity 1 23 0 1678 152 58 32 chr6 13953345 13953654 -168461588 - MER2 DNA MER2_type -27 318 2 526 251 61 39 chr6 13953695 13953926 -168461316 + L1ME LINE L1 5371 5606 -560 475 296 17 11 chr6 13954126 13954302 -168460940 - MER5B DNA MER1_type -1 177 1 1997 68 64 0 chr6 13954403 13954667 -168460575 + AluY SINE Alu 26 306 -5 315 319 53 68 chr6 13955414 13955584 -168459658 + MLT1J LTR MaLR 1 172 -339 2359 149 13 62 chr6 13955584 13955867 -168459375 + Tigger2a DNA MER2_type 2 256 -2452 2087 136 0 13 chr6 13955867 13956177 -168459065 + AluSx SINE Alu 1 306 -6 2359 149 13 62 chr6 13956177 13956348 -168458894 + Tigger2a DNA MER2_type 256 434 0 315 319 53 68 chr6 13956348 13956588 -168458654 + MLT1J LTR MaLR 172 405 -106 679 231 0 14 chr6 13956746 13956889 -168458353 + MER58B DNA MER1_type 195 335 -6 2484 153 56 19 chr6 13958306 13958719 -168456523 + MSTC LTR MaLR 1 428 0 1737 189 175 21 chr6 13959178 13959615 -168455627 + L1MD3 LINE L1 6972 7340 -655 2321 112 0 0 chr6 13959615 13959927 -168455315 + AluSp SINE Alu 1 312 -1 1737 189 175 21 chr6 13959927 13960217 -168455025 + L1MD3 LINE L1 7340 7995 0 * 2995 193 21 121 chr6 13960215 13961155 -168454087 + L1MC4 LINE L1 7209 7995 0 182 330 28 28 chr6 13961174 13961280 -168453962 - L2 LINE L2 -494 2820 2715 255 280 30 10 chr6 13961856 13961956 -168453286 - MLT1E2 LTR MaLR -277 349 248 1689 155 24 76 chr6 13962390 13962719 -168452523 + AluJb SINE Alu 1 312 0 792 256 34 17 chr6 13962770 13963004 -168452238 + MIR SINE MIR 23 260 -2 2262 93 10 10 chr6 13963506 13963817 -168451425 + AluSx SINE Alu 1 311 -1 517 275 58 5 chr6 13964288 13964477 -168450765 + MIR SINE MIR 49 247 -15 2264 90 0 10 chr6 13964550 13964862 -168450380 - AluSc SINE Alu 0 309 1 354 294 118 6 chr6 13965147 13965317 -168449925 - MIR3 SINE MIR 0 208 20 2030 148 7 0 chr6 13965815 13966118 -168449124 + AluSx SINE Alu 1 305 -7 374 308 92 0 chr6 13966202 13966332 -168448910 - MIR SINE MIR -71 191 50 2253 126 0 0 chr6 13966615 13966917 -168448325 + AluSx SINE Alu 1 302 -10 313 234 9 47 chr6 13967800 13967907 -168447335 + L1ME4a LINE L1 5989 6091 -30 258 105 0 0 chr6 13968936 13968974 -168446268 + (CCG)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr6 13968995 13969020 -168446222 + GC_rich Low_complexity Low_complexity 1 25 0 660 177 34 14 chr6 13969397 13969544 -168445698 - MER89 LTR ERV1 -409 150 1 327 233 110 43 chr6 13969545 13969708 -168445534 - MER5C DNA MER1_type -81 243 70 489 227 22 70 chr6 13970169 13970335 -168444907 - L2 LINE L2 -25 3288 3130 2201 98 11 0 chr6 13970335 13970621 -168444621 + AluSq SINE Alu 1 289 -24 489 227 22 70 chr6 13970621 13970639 -168444603 - L2 LINE L2 -183 3130 3113 207 241 37 0 chr6 13970673 13970727 -168444515 + MIR SINE MIR 180 235 -27 1699 219 66 20 chr6 13970753 13971192 -168444050 - MER65C LTR ERV1 0 461 3 854 255 82 58 chr6 13971309 13971688 -168443554 + L2 LINE L2 2665 3128 -185 2407 77 7 3 chr6 13971688 13971988 -168443254 - AluSq SINE Alu -12 301 1 854 255 82 58 chr6 13971988 13972178 -168443064 + L2 LINE L2 3128 3312 -1 224 146 83 0 chr6 13972465 13972513 -168442729 - L3 LINE CR1 -1 1576 1525 540 279 0 7 chr6 13973753 13973900 -168441342 + L1ME LINE L1 47 192 -5878 797 235 8 62 chr6 13974098 13974302 -168440940 - L1M4 LINE L1 -2525 3621 3432 2322 108 0 3 chr6 13974302 13974608 -168440634 + AluSq SINE Alu 1 305 -8 797 235 8 62 chr6 13974608 13974663 -168440579 - L1M4 LINE L1 -2714 3432 3376 1998 124 57 14 chr6 13974677 13975042 -168440200 - L1MA8 LINE L1 -174 6117 5743 891 175 12 0 chr6 13975118 13975278 -168439964 - L1MA8 LINE L1 -529 5771 5610 2718 33 0 0 chr6 13975884 13976184 -168439058 + AluY SINE Alu 2 301 -10 1581 147 55 29 chr6 13976243 13976515 -168438727 + AluJo SINE Alu 3 281 -31 23 68 0 0 chr6 13976516 13976560 -168438682 + AT_rich Low_complexity Low_complexity 1 44 0 2416 133 0 0 chr6 13976674 13977035 -168438207 + MER46B DNA MER2_type 1 236 0 2105 111 3 3 chr6 13977363 13977669 -168437573 + AluSx SINE Alu 1 306 -6 190 302 94 31 chr6 13977682 13977778 -168437464 - MIR SINE MIR -33 229 128 2252 107 0 0 chr6 13977982 13978292 -168436950 - AluSx SINE Alu -2 310 1 745 204 158 0 chr6 13978350 13978546 -168436696 + MER5C DNA MER1_type 1 227 -97 1901 143 3 3 chr6 13979090 13979384 -168435858 + AluJb SINE Alu 5 298 -14 189 156 156 0 chr6 13979895 13979940 -168435302 - L2 LINE L2 0 3272 3221 455 291 28 7 chr6 13980476 13980617 -168434625 + MIR SINE MIR 70 213 -49 370 242 36 85 chr6 13980964 13981129 -168434113 - L2 LINE L2 -1 3312 3156 1309 286 156 22 chr6 13981198 13981776 -168433466 - L2 LINE L2 -393 2921 2267 1464 258 103 58 chr6 13981776 13982512 -168432730 + LTR41 LTR ERVL 5 793 -2 1590 261 150 14 chr6 13982512 13983159 -168432083 - L2 LINE L2 -1037 2277 1543 527 289 68 43 chr6 13983425 13983498 -168431744 + MIR SINE MIR 22 92 -170 183 42 0 0 chr6 13983498 13983522 -168431720 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 527 289 68 43 chr6 13983522 13983683 -168431559 + MIR SINE MIR 92 262 0 2276 99 0 3 chr6 13983729 13984042 -168431200 - AluSx SINE Alu 0 312 1 2265 115 33 16 chr6 13984246 13984610 -168430632 + MSTA LTR MaLR 1 370 -58 570 319 114 19 chr6 13984605 13984965 -168430277 + MLT1J LTR MaLR 110 503 -8 * 2042 97 4 4 chr6 13985328 13985626 -168429616 - AluSc SINE Alu 0 298 1 255 329 0 13 chr6 13986467 13986546 -168428696 + MIR SINE MIR 49 126 -136 192 40 0 0 chr6 13987894 13987919 -168427323 + (T)n Simple_repeat Simple_repeat 1 25 0 2113 107 3 0 chr6 13988090 13988389 -168426853 + AluSx SINE Alu 1 300 -12 345 275 47 129 chr6 13988779 13988972 -168426270 - MIR3 SINE MIR -27 181 5 1961 120 0 0 chr6 13989100 13989407 -168425835 - AluSq SINE Alu 0 307 1 628 208 132 19 chr6 13989410 13989569 -168425673 + MER5B DNA MER1_type 2 178 0 871 134 0 15 chr6 13989586 13989720 -168425522 - FLAM_C SINE Alu -1 132 1 2770 84 3 3 chr6 13989742 13990097 -168425145 - MER1A DNA MER1_type 0 529 175 230 158 0 0 chr6 13990095 13990133 -168425109 - MER1A DNA MER1_type -489 38 1 * 594 182 182 14 chr6 13990187 13990335 -168424907 - MER5A DNA MER1_type -16 173 1 320 62 0 0 chr6 13992286 13992334 -168422908 - L1MB3 LINE L1 0 6183 6136 1788 151 3 22 chr6 13992337 13992648 -168422594 - AluSx SINE Alu -7 305 1 25 0 0 0 chr6 13992654 13992679 -168422563 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 13992754 13992789 -168422453 + AT_rich Low_complexity Low_complexity 1 35 0 185 247 0 26 chr6 13992789 13992866 -168422376 + (CATA)n Simple_repeat Simple_repeat 2 76 0 241 163 0 0 chr6 13992876 13992925 -168422317 - L1MC4 LINE L1 -1342 6700 6652 330 118 0 0 chr6 13992938 13992989 -168422253 + MLT2A1 LTR ERVL 394 444 0 951 165 19 0 chr6 13993008 13993166 -168422076 + MSTD LTR MaLR 234 394 -2 1429 186 0 8 chr6 13993273 13993521 -168421721 - AluJo SINE Alu -25 287 42 579 280 37 0 chr6 13993521 13993764 -168421478 - Charlie4a DNA MER1_type -72 436 185 922 189 52 24 chr6 13993764 13993976 -168421266 + AluJo SINE Alu 87 304 -8 868 178 61 11 chr6 13993980 13994160 -168421082 - Charlie4a DNA MER1_type -319 189 1 279 0 0 0 chr6 13994690 13994721 -168420521 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1852 139 0 23 chr6 13997540 13997843 -168417399 + AluJb SINE Alu 2 297 -15 237 307 129 0 chr6 13998016 13998117 -168417125 + MIR3 SINE MIR 88 201 -7 2291 84 3 0 chr6 14000160 14000457 -168414785 + AluSg SINE Alu 1 298 -12 283 227 53 40 chr6 14000508 14000583 -168414659 + MIR SINE MIR 55 130 -78 286 233 47 47 chr6 14000604 14000690 -168414552 + MIR SINE MIR 20 105 -103 476 300 32 25 chr6 14001378 14001576 -168413666 + MIR SINE MIR 20 218 -44 21 0 0 0 chr6 14002600 14002621 -168412621 + AT_rich Low_complexity Low_complexity 1 21 0 2106 123 0 0 chr6 14002676 14002984 -168412258 + AluY SINE Alu 1 308 -3 339 113 0 0 chr6 14003706 14003759 -168411483 + (TG)n Simple_repeat Simple_repeat 2 54 0 216 0 0 0 chr6 14004258 14004282 -168410960 + (T)n Simple_repeat Simple_repeat 1 24 0 1437 130 63 76 chr6 14006456 14006572 -168408670 + AluJo SINE Alu 1 117 -195 405 0 0 0 chr6 14006572 14006617 -168408625 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1437 130 63 76 chr6 14006617 14006815 -168408427 + AluJo SINE Alu 117 311 -1 1189 155 22 104 chr6 14006867 14007039 -168408203 - AluJo SINE Alu -3 309 173 2177 94 0 0 chr6 14007039 14007327 -168407915 - AluSg SINE Alu -22 288 1 1189 155 22 104 chr6 14007327 14007471 -168407771 - AluJo SINE Alu -139 173 19 23 0 0 0 chr6 14007617 14007640 -168407602 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr6 14007789 14007841 -168407401 + AT_rich Low_complexity Low_complexity 1 52 0 32 43 0 0 chr6 14009384 14009430 -168405812 + AT_rich Low_complexity Low_complexity 1 46 0 380 92 10 194 chr6 14009650 14009748 -168405494 - MADE1 DNA Mariner 0 80 1 181 325 32 81 chr6 14009764 14009887 -168405355 + L2 LINE L2 3145 3261 -11 773 241 162 50 chr6 14009987 14010094 -168405148 + L1ME4a LINE L1 5634 5728 -393 1419 174 94 4 chr6 14010094 14010370 -168404872 + AluJo SINE Alu 1 301 -11 773 241 162 50 chr6 14010370 14010701 -168404541 + L1ME4a LINE L1 5728 6121 0 357 109 0 0 chr6 14011378 14011433 -168403809 + (TG)n Simple_repeat Simple_repeat 2 56 0 340 303 105 70 chr6 14013775 14014003 -168401239 - L2 LINE L2 -49 3223 2988 324 0 0 0 chr6 14014432 14014468 -168400774 + (CA)n Simple_repeat Simple_repeat 2 37 0 701 231 89 62 chr6 14014711 14014936 -168400306 - MIR SINE MIR -3 259 29 390 21 0 0 chr6 14014962 14015009 -168400233 + (TG)n Simple_repeat Simple_repeat 2 48 0 1945 135 3 10 chr6 14015009 14015305 -168399937 - AluSx SINE Alu -18 294 1 1525 103 7 73 chr6 14015314 14015428 -168399814 - L1MA5A LINE L1 -3 6294 6174 2054 112 3 26 chr6 14015428 14015732 -168399510 - AluSp SINE Alu -12 301 5 1525 103 7 73 chr6 14015732 14015890 -168399352 - L1MA5A LINE L1 -123 6174 6040 418 274 51 57 chr6 14017725 14017900 -168397342 + Charlie8 DNA MER1_type 103 276 -2141 1804 189 177 16 chr6 14017922 14018345 -168396897 - MLT1E2 LTR MaLR 0 626 136 294 268 100 22 chr6 14018799 14018941 -168396301 - MIR SINE MIR -38 170 21 438 295 89 67 chr6 14019904 14020429 -168394813 + LTR67 LTR ERVL 2 538 -19 182 405 9 9 chr6 14020542 14020653 -168394589 + MIR3 SINE MIR 6 116 -92 * 303 257 177 0 chr6 14020636 14020749 -168394493 + MIR SINE MIR 119 251 -11 188 304 72 43 chr6 14020850 14020919 -168394323 + MIR SINE MIR 8 78 -184 181 128 128 0 chr6 14022036 14022075 -168393167 - MIR SINE MIR -117 145 102 408 88 0 0 chr6 14022591 14022648 -168392594 + (CA)n Simple_repeat Simple_repeat 2 58 0 2624 103 5 14 chr6 14022968 14023335 -168391907 + THE1B LTR MaLR 1 364 0 4173 55 2 0 chr6 14023392 14023898 -168391344 - L1PA10 LINE L1 -11 6157 5651 1393 249 40 17 chr6 14024003 14024340 -168390902 + MER119 DNA MER1_type 1 345 -238 1053 138 12 0 chr6 14024340 14024500 -168390742 + MER93b LTR ERV1 1 162 -211 649 208 8 0 chr6 14024511 14024631 -168390611 + MER93a LTR ERV1 282 402 0 782 201 41 55 chr6 14024646 14024674 -168390568 + MER119 DNA MER1_type 367 394 -189 2036 105 3 3 chr6 14024674 14024952 -168390290 + AluSx SINE Alu 7 287 -25 243 61 0 0 chr6 14024952 14024985 -168390257 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 782 201 41 55 chr6 14024992 14025182 -168390060 + MER119 DNA MER1_type 394 582 -1 906 115 0 0 chr6 14026786 14026916 -168388326 - AluSp/q SINE Alu -12 301 172 13564 61 2 1 chr6 14028005 14030500 -168384742 + L1PA6 LINE L1 3652 6153 -1 180 0 0 0 chr6 14031001 14031021 -168384221 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1012 90 0 0 chr6 14031034 14031167 -168384075 + AluJo/FLAM SINE Alu 1 133 -179 1548 184 20 3 chr6 14031169 14031468 -168383774 + AluJo SINE Alu 1 304 -8 435 173 0 0 chr6 14031471 14031552 -168383690 + GA-rich Low_complexity Low_complexity 4 84 0 535 243 18 0 chr6 14031552 14031663 -168383579 + MIR SINE MIR 144 256 -6 374 329 7 7 chr6 14031806 14031946 -168383296 + L3b LINE CR1 1209 1348 -235 1773 94 0 0 chr6 14032018 14032253 -168382989 + AluSg/x SINE Alu 76 310 0 564 284 135 18 chr6 14032367 14032589 -168382653 + MIR SINE MIR 2 249 -13 1479 172 79 7 chr6 14032808 14033099 -168382143 + AluJo SINE Alu 1 312 0 21 36 0 0 chr6 14033176 14033204 -168382038 + AT_rich Low_complexity Low_complexity 1 28 0 1745 171 0 20 chr6 14033499 14033798 -168381444 + AluJo SINE Alu 1 293 -19 2107 126 0 16 chr6 14033799 14034116 -168381126 + AluSx SINE Alu 1 312 0 2406 62 7 0 chr6 14034494 14034802 -168380440 - AluY SINE Alu -1 310 1 229 237 230 22 chr6 14034942 14035077 -168380165 + L1MC4a LINE L1 5815 5977 -1831 1775 150 0 55 chr6 14035192 14035367 -168379875 - AluJo SINE Alu -4 308 158 2204 89 7 0 chr6 14035367 14035658 -168379584 - AluSx SINE Alu -19 293 1 1775 150 0 55 chr6 14035658 14035808 -168379434 - AluJo SINE Alu -154 158 1 241 170 0 21 chr6 14035815 14035862 -168379380 - AluJ/FLAM SINE Alu -1 132 87 22 56 0 0 chr6 14035912 14035948 -168379294 + AT_rich Low_complexity Low_complexity 1 36 0 395 246 156 8 chr6 14036261 14036383 -168378859 + MIR SINE MIR 69 208 -54 381 279 211 20 chr6 14036895 14037099 -168378143 - MIR SINE MIR 0 262 20 1830 201 113 14 chr6 14037235 14037667 -168377575 + MLT1D LTR MaLR 31 505 0 623 137 0 0 chr6 14037868 14037963 -168377279 - AluJ/FLAM SINE Alu -216 96 2 465 216 0 17 chr6 14037965 14038081 -168377161 + L1ME2 LINE L1 5579 5692 -474 459 218 36 9 chr6 14038854 14038964 -168376278 + MIR SINE MIR 92 204 -58 512 180 78 5 chr6 14039111 14039241 -168376001 + L1ME2 LINE L1 6039 6334 0 2249 217 48 25 chr6 14039719 14039738 -168375504 + L1ME1 LINE L1 5560 5577 -589 1327 184 63 57 chr6 14039738 14040037 -168375205 - AluJb SINE Alu 0 302 2 2249 217 48 25 chr6 14040037 14040435 -168374807 + L1ME1 LINE L1 5577 5996 -170 186 103 0 0 chr6 14040435 14040464 -168374778 + (CTGGGG)n Simple_repeat Simple_repeat 2 30 0 2249 217 48 25 chr6 14040464 14040635 -168374607 + L1ME1 LINE L1 5996 6162 -4 305 325 29 53 chr6 14041918 14042124 -168373118 + L1MC5 LINE L1 7478 7678 -283 208 222 0 0 chr6 14042124 14042160 -168373082 + polypurine Low_complexity Low_complexity 4 39 0 4411 197 25 14 chr6 14042265 14043694 -168371548 + L1MB7 LINE L1 4345 5793 -391 1496 135 66 143 chr6 14043694 14043835 -168371407 - MER7A DNA MER2_type -2692 346 196 2307 82 3 13 chr6 14043835 14044150 -168371092 - AluSx SINE Alu 0 312 1 1496 135 66 143 chr6 14044150 14044385 -168370857 - MER7A DNA MER2_type -2842 196 1 4411 197 25 14 chr6 14044385 14044697 -168370545 + L1MB7 LINE L1 5793 6100 -84 254 233 41 55 chr6 14045020 14045093 -168370149 - MIR3 SINE MIR -46 162 91 249 339 161 0 chr6 14045194 14045324 -168369918 + MIR SINE MIR 49 199 -63 23 0 0 0 chr6 14045642 14045665 -168369577 + AT_rich Low_complexity Low_complexity 1 23 0 1160 177 139 4 chr6 14046005 14046271 -168368971 - MER33 DNA MER1_type -22 302 1 837 203 31 6 chr6 14047615 14047778 -168367464 + MLT1J LTR MaLR 30 196 -315 263 255 64 11 chr6 14047823 14047917 -168367325 + MLT1J LTR MaLR 291 389 -122 1854 124 4 4 chr6 14049534 14049808 -168365434 + AluSx SINE Alu 7 280 -32 1034 97 23 6 chr6 14049814 14049989 -168365253 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 542 167 9 0 chr6 14050012 14050120 -168365122 + GA-rich Low_complexity Low_complexity 4 112 0 306 272 115 16 chr6 14050121 14050364 -168364878 - HAL1b LINE L1 -28 1320 1054 2199 105 0 6 chr6 14050365 14050678 -168364564 + AluY SINE Alu 1 311 0 180 0 0 0 chr6 14050731 14050751 -168364491 + (T)n Simple_repeat Simple_repeat 1 20 0 1614 142 12 0 chr6 14051048 14051302 -168363940 + AluSp SINE Alu 38 294 -19 399 128 35 0 chr6 14051303 14051389 -168363853 + GA-rich Low_complexity Low_complexity 1 89 0 2205 103 0 0 chr6 14052017 14052317 -168362925 - AluSx SINE Alu -12 300 1 763 280 58 0 chr6 14052599 14052824 -168362418 + MIR SINE MIR 21 258 -4 2279 130 60 0 chr6 14052856 14053224 -168362018 + MLT1B LTR MaLR 1 390 0 549 264 191 14 chr6 14055222 14055442 -168359800 + MIR SINE MIR 3 261 -1 522 323 97 56 chr6 14056561 14056679 -168358563 - L2 LINE L2 0 3313 3201 1694 136 74 52 chr6 14056679 14057046 -168358196 + THE1C LTR MaLR 1 375 0 522 323 97 56 chr6 14057046 14057661 -168357581 - L2 LINE L2 -112 3201 2494 2148 51 0 0 chr6 14057900 14058157 -168357085 - AluY SINE Alu -34 277 21 267 347 59 41 chr6 14059401 14059571 -168355671 - MIR3 SINE MIR -6 202 30 676 315 85 32 chr6 14060093 14060836 -168354406 + L2 LINE L2 2505 3295 -18 384 323 103 27 chr6 14061513 14061736 -168353506 + L1ME4a LINE L1 5518 5757 -364 304 257 29 0 chr6 14061738 14061808 -168353434 + MIR SINE MIR 187 258 -4 1808 149 0 32 chr6 14061930 14062246 -168352996 + AluJo SINE Alu 1 306 -6 194 161 0 18 chr6 14062810 14062866 -168352376 + (CA)n Simple_repeat Simple_repeat 1 55 0 235 236 0 18 chr6 14063929 14063984 -168351258 + Tigger5 DNA MER2_type 2 55 -2268 397 200 33 11 chr6 14063989 14064079 -168351163 + Tigger5 DNA MER2_type 2231 2322 -1 206 381 81 40 chr6 14064501 14064570 -168350672 - L3 LINE CR1 -33 1544 1479 2090 128 3 0 chr6 14064570 14064882 -168350360 - AluSp SINE Alu 0 313 1 206 381 81 40 chr6 14064882 14065035 -168350207 - L3 LINE CR1 -98 1479 1313 213 39 0 0 chr6 14065067 14065093 -168350149 + (ATG)n Simple_repeat Simple_repeat 3 28 0 540 246 175 52 chr6 14065233 14065501 -168349741 + L1ME4a LINE L1 5787 6087 -34 1017 234 4 58 chr6 14065607 14065678 -168349564 - MIR SINE MIR -8 254 181 1787 173 0 3 chr6 14065678 14065984 -168349258 - AluJo SINE Alu -7 305 1 1017 234 4 58 chr6 14065984 14066169 -168349073 - MIR SINE MIR -81 181 12 1134 68 115 133 chr6 14066496 14066730 -168348512 + MER30 DNA MER1_type 1 230 0 552 267 68 0 chr6 14067577 14067738 -168347504 + MIR SINE MIR 12 183 -79 1697 160 32 0 chr6 14068097 14068379 -168346863 + AluJb SINE Alu 1 291 -21 397 219 103 32 chr6 14070375 14070530 -168344712 - MER112 DNA MER1_type -23 237 72 217 227 53 13 chr6 14070535 14070610 -168344632 + (CATA)n Simple_repeat Simple_repeat 3 80 0 663 271 31 75 chr6 14070618 14070873 -168344369 + MLT1G1 LTR MaLR 1 178 -352 2042 124 0 0 chr6 14070873 14071198 -168344044 + AluSx SINE Alu 1 312 0 663 271 31 75 chr6 14071198 14071238 -168344004 + MLT1G1 LTR MaLR 178 218 -312 415 299 21 42 chr6 14071688 14071832 -168343410 - MIR SINE MIR -119 143 3 463 234 128 14 chr6 14071961 14072115 -168343127 - MIR SINE MIR -63 145 7 1478 155 89 24 chr6 14072934 14073225 -168342017 - AluJo SINE Alu -2 310 1 1104 161 40 67 chr6 14073792 14073837 -168341405 - MER20 DNA MER1_type -1 218 173 2100 113 7 3 chr6 14073837 14074137 -168341105 - AluSq SINE Alu -12 301 1 1104 161 40 67 chr6 14074137 14074315 -168340927 - MER20 DNA MER1_type -46 173 1 215 340 162 25 chr6 14076013 14076248 -168338994 + L2 LINE L2 2933 3199 -73 531 280 31 16 chr6 14077142 14077385 -168337857 - L1MC4a LINE L1 -193 5928 5679 1181 190 0 0 chr6 14078109 14078309 -168336933 + MER3 DNA MER1_type 10 209 0 217 206 250 0 chr6 14078567 14078635 -168336607 - L2 LINE L2 0 3272 3188 25 0 0 0 chr6 14079278 14079303 -168335939 + AT_rich Low_complexity Low_complexity 1 25 0 188 289 58 0 chr6 14079407 14079459 -168335783 - MIR SINE MIR -65 143 89 433 204 57 0 chr6 14080227 14080315 -168334927 + FLAM_A SINE Alu 2 94 -48 614 276 36 40 chr6 14080331 14080491 -168334751 - MIR SINE MIR -12 250 90 545 239 50 61 chr6 14080491 14080671 -168334571 - MER5B DNA MER1_type 0 178 1 614 276 36 40 chr6 14080671 14080760 -168334482 - MIR SINE MIR -172 90 2 2274 108 3 7 chr6 14080904 14081209 -168334033 - AluSq SINE Alu -9 304 1 244 169 39 39 chr6 14082203 14082280 -168332962 + L1MA8 LINE L1 6090 6166 -125 3277 138 16 67 chr6 14082285 14082893 -168332349 - MER6A DNA MER2_type -1 604 28 417 89 0 0 chr6 14082896 14082952 -168332290 + L1MA8 LINE L1 6168 6223 -68 1190 189 13 21 chr6 14082952 14083190 -168332052 + Tigger1 DNA MER2_type 1 236 -2182 * 8815 97 38 8 chr6 14083168 14084252 -168330990 + Tigger1 DNA MER2_type 960 2087 -331 2379 102 0 0 chr6 14084252 14084557 -168330685 + AluSq SINE Alu 1 305 -8 8815 97 38 8 chr6 14084557 14084705 -168330537 + Tigger1 DNA MER2_type 2087 2229 -189 3481 114 6 6 chr6 14084707 14085215 -168330027 + L1PA14 LINE L1 5620 6127 -34 21 0 0 0 chr6 14085343 14085364 -168329878 + AT_rich Low_complexity Low_complexity 1 21 0 979 161 102 0 chr6 14085393 14085579 -168329663 + Tigger1 DNA MER2_type 2213 2417 -1 256 178 0 27 chr6 14085579 14085652 -168329590 + L1MA7 LINE L1 6221 6291 0 236 125 25 25 chr6 14086349 14086389 -168328853 + L1MCa LINE L1 482 521 -5905 1494 192 84 9 chr6 14087805 14088138 -168327104 - MLT1C LTR MaLR -2 465 108 2320 108 0 13 chr6 14088173 14088489 -168326753 + AluSx SINE Alu 1 312 0 1840 142 0 14 chr6 14089743 14090025 -168325217 + AluJo SINE Alu 21 298 -14 2342 133 36 30 chr6 14090237 14090599 -168324643 + THE1B LTR MaLR 1 364 0 2511 197 24 37 chr6 14091093 14091640 -168323602 - MER68 LTR ERV1 0 562 23 249 215 161 21 chr6 14091835 14091928 -168323314 - MIR3 SINE MIR -10 198 93 231 111 44 22 chr6 14092379 14092424 -168322818 - L1PA15-16 LINE L1 -6103 746 701 507 280 65 23 chr6 14092886 14093100 -168322142 + L1MC4 LINE L1 7635 7857 -185 962 185 6 17 chr6 14093114 14093292 -168321950 - MLT1A1 LTR MaLR -8 357 182 260 149 0 0 chr6 14093486 14093533 -168321709 + L1MC4 LINE L1 7581 7627 -415 385 248 43 8 chr6 14093718 14093835 -168321407 - MER46C DNA MER2_type -159 179 59 413 108 0 14 chr6 14093956 14094030 -168321212 + (AGGGGG)n Simple_repeat Simple_repeat 3 75 0 382 105 53 0 chr6 14094033 14094090 -168321152 + Tigger1 DNA MER2_type 966 1025 -1393 * 3671 144 28 15 chr6 14094088 14094686 -168320556 + Tigger1 DNA MER2_type 1806 2411 -7 2784 91 3 3 chr6 14095624 14095985 -168319257 - L1PB1 LINE L1 0 6151 5791 204 40 0 0 chr6 14095985 14096010 -168319232 + (TG)n Simple_repeat Simple_repeat 1 25 0 226 235 0 0 chr6 14096010 14096061 -168319181 + L1MC4 LINE L1 6653 6703 -1339 * 234 254 0 0 chr6 14096019 14096086 -168319156 - L1MC4 LINE L1 -1339 6703 6637 12810 163 37 15 chr6 14096089 14099952 -168315290 - L1PBa LINE L1 -2190 4672 725 964 127 19 13 chr6 14099967 14100124 -168315118 - L1PBa LINE L1 -6705 158 1 191 253 22 66 chr6 14100375 14100466 -168314776 - L2 LINE L2 0 3272 3186 1964 90 181 12 chr6 14103927 14104248 -168310994 + THE1C LTR MaLR 1 375 0 3127 147 32 26 chr6 14104383 14104501 -168310741 + MER34 LTR ERV1 1 117 -425 1895 142 10 10 chr6 14104501 14104803 -168310439 - AluJo SINE Alu -10 302 1 3127 147 32 26 chr6 14104803 14105222 -168310020 + MER34 LTR ERV1 117 541 -1 623 316 67 10 chr6 14105248 14105441 -168309801 + MIR SINE MIR 15 218 -44 24 53 0 0 chr6 14106020 14106058 -168309184 + AT_rich Low_complexity Low_complexity 1 38 0 1984 150 0 7 chr6 14106145 14106439 -168308803 - AluJb SINE Alu -18 294 3 26 50 0 0 chr6 14106488 14106528 -168308714 + AT_rich Low_complexity Low_complexity 1 40 0 359 217 155 87 chr6 14106894 14107101 -168308141 - HAL1 LINE L1 -2263 244 24 1041 219 5 9 chr6 14107252 14107467 -168307775 + MLT1A2 LTR MaLR 150 363 -11 226 259 0 0 chr6 14110094 14110148 -168305094 + (TA)n Simple_repeat Simple_repeat 1 54 0 203 404 35 0 chr6 14110346 14110517 -168304725 + L2 LINE L2 2635 2811 -503 752 218 26 13 chr6 14110664 14110820 -168304422 - MIR SINE MIR -92 170 13 1405 192 84 9 chr6 14162706 14163039 -168252203 - MLT1C LTR MaLR -2 465 108 2357 108 0 13 chr6 14163074 14163390 -168251852 + AluSx SINE Alu 1 312 0 1888 142 0 14 chr6 14164645 14164927 -168250315 + AluJo SINE Alu 21 298 -14 2241 133 36 30 chr6 14165140 14165502 -168249740 + THE1B LTR MaLR 1 364 0 2409 197 24 37 chr6 14165996 14166543 -168248699 - MER68 LTR ERV1 0 562 23 265 226 161 21 chr6 14166738 14166831 -168248411 - MIR3 SINE MIR -10 198 93 484 280 65 23 chr6 14167789 14168003 -168247239 + L1MC4 LINE L1 7635 7857 -185 935 185 6 17 chr6 14168017 14168195 -168247047 - MLT1A1 LTR MaLR -8 357 182 245 149 0 0 chr6 14168389 14168436 -168246806 + L1MC4 LINE L1 7581 7627 -415 210 293 53 13 chr6 14168443 14168518 -168246724 + MIR SINE MIR 65 142 -66 366 241 76 35 chr6 14168621 14168766 -168246476 - MER46C DNA MER2_type -159 179 29 322 381 42 24 chr6 14168879 14169047 -168246195 + L2 LINE L2 3102 3272 0 459 270 175 0 chr6 14169276 14169476 -168245766 - MIR SINE MIR -6 256 22 2521 158 42 7 chr6 14169523 14169972 -168245270 + MLT1C LTR MaLR 3 467 0 237 83 0 0 chr6 14170728 14170764 -168244478 + (CA)n Simple_repeat Simple_repeat 2 37 0 2084 131 0 35 chr6 14171783 14172095 -168243147 - AluJb SINE Alu -11 301 1 185 297 149 0 chr6 14172891 14172965 -168242277 + L2 LINE L2 3174 3258 -14 2023 128 0 3 chr6 14173726 14174037 -168241205 - AluSg SINE Alu 0 310 1 530 232 49 21 chr6 14174140 14174282 -168240960 + MIR SINE MIR 35 180 -82 297 0 0 0 chr6 14174378 14174411 -168240831 + (A)n Simple_repeat Simple_repeat 1 33 0 1154 230 52 68 chr6 14174601 14174744 -168240498 + MSTD LTR MaLR 1 145 -251 6273 82 16 40 chr6 14174744 14175479 -168239763 + L1PA10 LINE L1 4759 5452 -716 2332 111 0 0 chr6 14175479 14175776 -168239466 + AluSx SINE Alu 4 300 -12 6273 82 16 40 chr6 14175776 14176466 -168238776 + L1PA10 LINE L1 5452 6157 -11 1154 230 52 68 chr6 14176466 14176722 -168238520 + MSTD LTR MaLR 145 394 -2 353 255 226 13 chr6 14177600 14177754 -168237488 + MIR SINE MIR 4 192 -60 745 210 13 0 chr6 14178981 14179138 -168236104 - MER3 DNA MER1_type -50 159 1 297 206 78 106 chr6 14179205 14179346 -168235896 - MER112 DNA MER1_type -34 226 90 1567 201 29 27 chr6 14180149 14180486 -168234756 + MLT2D LTR ERVL 1 357 -40 270 0 0 0 chr6 14180486 14180516 -168234726 + (TG)n Simple_repeat Simple_repeat 2 31 0 1567 201 29 27 chr6 14180516 14180544 -168234698 + MLT2D LTR ERVL 357 383 -14 207 292 10 31 chr6 14180567 14180663 -168234579 + L2 LINE L2 2996 3089 -183 1457 72 106 0 chr6 14180743 14180951 -168234291 + MER30 DNA MER1_type 1 230 0 667 198 153 0 chr6 14180980 14181137 -168234105 + MER5A DNA MER1_type 9 189 0 661 234 0 0 chr6 14181161 14181302 -168233940 - MER5B DNA MER1_type -37 141 1 274 270 52 26 chr6 14181305 14181420 -168233822 - MIR SINE MIR -56 152 35 285 209 0 0 chr6 14182517 14182584 -168232658 + (CA)n Simple_repeat Simple_repeat 1 67 0 412 312 27 24 chr6 14182857 14183021 -168232221 - MIR3 SINE MIR -6 202 36 22 56 0 0 chr6 14183669 14183705 -168231537 + AT_rich Low_complexity Low_complexity 1 36 0 575 264 76 71 chr6 14183706 14184126 -168231116 - L1ME4a LINE L1 -66 6055 5634 228 291 68 29 chr6 14184198 14184301 -168230941 + MIR SINE MIR 24 131 -77 317 294 59 39 chr6 14185380 14185533 -168229709 + MIR SINE MIR 101 256 -6 1130 156 28 47 chr6 14187387 14187515 -168227727 + MER3 DNA MER1_type 2 126 -83 2827 71 3 0 chr6 14187515 14187869 -168227373 - THE1A LTR MaLR 0 355 1 1130 156 28 47 chr6 14187869 14187952 -168227290 + MER3 DNA MER1_type 126 209 0 206 261 0 0 chr6 14187960 14188006 -168227236 + L2 LINE L2 3222 3267 -5 481 206 46 15 chr6 14188102 14188233 -168227009 - MIR SINE MIR -85 177 43 2334 113 3 0 chr6 14189709 14190020 -168225222 + AluSp SINE Alu 2 313 0 3814 209 0 13 chr6 14190671 14190902 -168224340 + L1ME1 LINE L1 5270 5504 -680 2140 120 7 14 chr6 14190902 14191038 -168224204 + AluSx SINE Alu 1 136 -176 2158 94 0 40 chr6 14191038 14191373 -168223869 + AluSg SINE Alu 1 310 0 2140 120 7 14 chr6 14191373 14191528 -168223714 + AluSx SINE Alu 136 290 -22 3814 209 0 13 chr6 14191528 14192216 -168223026 + L1ME1 LINE L1 5504 6184 0 1026 115 120 11 chr6 14192773 14192813 -168222429 - MLT2D LTR ERVL 0 414 380 396 0 0 0 chr6 14192813 14192857 -168222385 + (TG)n Simple_repeat Simple_repeat 2 45 0 1026 115 120 11 chr6 14192857 14192924 -168222318 - MLT2D LTR ERVL -34 380 322 222 37 0 0 chr6 14192924 14192951 -168222291 + (CAGG)n Simple_repeat Simple_repeat 3 29 0 1026 115 120 11 chr6 14192951 14193025 -168222217 - MLT2D LTR ERVL -92 322 212 24 0 0 0 chr6 14193233 14193257 -168221985 + AT_rich Low_complexity Low_complexity 1 24 0 2093 148 7 0 chr6 14193380 14193690 -168221552 + AluSx SINE Alu 1 312 0 2201 110 7 10 chr6 14193725 14194033 -168221209 - AluSq SINE Alu -6 307 1 24 32 0 0 chr6 14194658 14194689 -168220553 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr6 14194784 14194810 -168220432 + AT_rich Low_complexity Low_complexity 1 26 0 315 232 89 27 chr6 14194906 14195018 -168220224 - MIR SINE MIR -70 192 74 276 285 200 0 chr6 14196048 14196113 -168219129 + MER5A DNA MER1_type 33 84 -105 1576 167 104 0 chr6 14196113 14196382 -168218860 - AluJo SINE Alu -15 297 1 276 285 200 0 chr6 14196382 14196446 -168218796 + MER5A DNA MER1_type 84 188 -1 759 308 64 31 chr6 14196549 14196698 -168218544 - L2 LINE L2 0 3313 3170 192 40 0 0 chr6 14196698 14196723 -168218519 + (CAAG)n Simple_repeat Simple_repeat 3 27 0 759 308 64 31 chr6 14196723 14197154 -168218088 - L2 LINE L2 -143 3170 2704 234 0 0 0 chr6 14197154 14197180 -168218062 + (CA)n Simple_repeat Simple_repeat 2 27 0 759 308 64 31 chr6 14197180 14197265 -168217977 - L2 LINE L2 -609 2704 2623 736 228 74 89 chr6 14197378 14197772 -168217470 + L1ME4a LINE L1 5574 5961 -160 74 79 0 0 chr6 14197785 14197950 -168217292 + AT_rich Low_complexity Low_complexity 1 165 0 235 253 27 13 chr6 14197950 14198025 -168217217 + L1MC/D LINE L1 5853 5928 -1880 2175 115 0 3 chr6 14198046 14198332 -168216910 + AluSx SINE Alu 1 285 -27 228 86 0 0 chr6 14198332 14198367 -168216875 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 14198398 14198421 -168216821 + AT_rich Low_complexity Low_complexity 1 23 0 259 168 53 0 chr6 14198465 14198560 -168216682 + (TA)n Simple_repeat Simple_repeat 2 101 0 442 288 126 11 chr6 14199364 14199555 -168215687 + MIR SINE MIR 35 247 -15 21 36 0 0 chr6 14202850 14202878 -168212364 + GC_rich Low_complexity Low_complexity 1 28 0 191 59 0 29 chr6 14203275 14203309 -168211933 + (CCG)n Simple_repeat Simple_repeat 2 34 0 22 94 0 0 chr6 14203326 14203390 -168211852 + GC_rich Low_complexity Low_complexity 1 64 0 459 278 105 10 chr6 14203615 14203824 -168211418 - MIR SINE MIR -20 242 14 402 219 0 67 chr6 14204257 14204362 -168210880 + L2 LINE L2 3216 3313 0 743 233 90 9 chr6 14204913 14205136 -168210106 + MIR SINE MIR 12 252 -10 1448 183 30 34 chr6 14205301 14205596 -168209646 + AluJo SINE Alu 1 294 -18 975 277 132 19 chr6 14205711 14206279 -168208963 + L2 LINE L2 2332 3039 -274 186 43 0 0 chr6 14206279 14206302 -168208940 + (CA)n Simple_repeat Simple_repeat 2 24 0 975 277 132 19 chr6 14206302 14206609 -168208633 + L2 LINE L2 3039 3310 -3 2360 82 0 7 chr6 14207516 14207838 -168207404 - AluY SINE Alu 0 311 1 1071 157 41 20 chr6 14208032 14208229 -168207013 + AluJo SINE Alu 85 285 -27 24 67 0 0 chr6 14208231 14208276 -168206966 + AT_rich Low_complexity Low_complexity 1 45 0 889 145 0 0 chr6 14208873 14209004 -168206238 - FLAM_C SINE Alu -2 131 1 232 246 229 39 chr6 14209019 14209198 -168206044 - MIR SINE MIR -48 214 2 552 292 114 40 chr6 14209418 14210084 -168205158 + L2 LINE L2 2589 3313 0 2158 63 81 18 chr6 14210105 14210390 -168204852 - AluSx SINE Alu -9 303 1 258 151 66 142 chr6 14210508 14210614 -168204628 - L1MB3 LINE L1 -1 6179 6082 22 35 0 0 chr6 14211344 14211373 -168203869 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 14212284 14212305 -168202937 + (CA)n Simple_repeat Simple_repeat 2 22 0 1050 285 99 40 chr6 14212457 14213431 -168201811 + L1ME3 LINE L1 2639 3555 -2591 2343 57 7 0 chr6 14213431 14213735 -168201507 + AluY SINE Alu 1 306 0 1050 285 99 40 chr6 14213735 14214195 -168201047 + L1ME3 LINE L1 3555 3987 -2159 1693 112 123 11 chr6 14214195 14214464 -168200778 - AluSg1 SINE Alu -10 299 1 1050 285 99 40 chr6 14214464 14214746 -168200496 + L1ME3 LINE L1 3987 4507 -1639 426 218 122 131 chr6 14214837 14215182 -168200060 - MLT1H LTR MaLR 0 549 167 2197 104 0 10 chr6 14215182 14215481 -168199761 - AluSx SINE Alu -16 296 1 426 218 122 131 chr6 14215481 14215610 -168199632 - MLT1H LTR MaLR -382 167 38 352 264 56 34 chr6 14215682 14215860 -168199382 + L1ME3 LINE L1 4747 4928 -1218 1527 186 139 65 chr6 14215894 14216209 -168199033 + MLT1F LTR MaLR 27 392 -150 1756 172 69 31 chr6 14216209 14216249 -168198993 - MLT1A2 LTR MaLR 0 374 337 2359 74 0 17 chr6 14216249 14216569 -168198673 + AluSq SINE Alu 1 315 0 1756 172 69 31 chr6 14216569 14216885 -168198357 - MLT1A2 LTR MaLR -37 337 1 1527 186 139 65 chr6 14216885 14217049 -168198193 + MLT1F LTR MaLR 392 542 0 1019 299 92 30 chr6 14217203 14217775 -168197467 + L1ME3 LINE L1 5175 5790 -372 2126 129 0 16 chr6 14217775 14218085 -168197157 + AluSx SINE Alu 1 305 -7 1019 299 92 30 chr6 14218085 14218187 -168197055 + L1ME3 LINE L1 5790 5884 -278 183 80 0 0 chr6 14218254 14218279 -168196963 + (TG)n Simple_repeat Simple_repeat 2 26 0 44140 29 21 1 chr6 14218422 14224454 -168190788 + L1HS LINE L1 1 6155 0 922 241 86 79 chr6 14224469 14224875 -168190367 + MLT2B1 LTR ERVL 28 436 -84 305 190 69 9 chr6 14224878 14224994 -168190248 + (TA)n Simple_repeat Simple_repeat 1 123 0 369 289 118 20 chr6 14225005 14225209 -168190033 + L1ME3A LINE L1 5256 5479 -2329 276 257 40 20 chr6 14225295 14225447 -168189795 + (TA)n Simple_repeat Simple_repeat 2 156 0 915 120 16 0 chr6 14225943 14226068 -168189174 + AluJb SINE Alu 1 127 -185 31 0 0 0 chr6 14226068 14226099 -168189143 + AT_rich Low_complexity Low_complexity 1 31 0 601 239 35 82 chr6 14226107 14226425 -168188817 - L1ME4a LINE L1 -281 5840 5538 23 33 0 0 chr6 14226594 14226624 -168188618 + AT_rich Low_complexity Low_complexity 1 30 0 2518 84 20 0 chr6 14227416 14227762 -168187480 + L1PA13 LINE L1 5811 6163 0 212 0 36 0 chr6 14227859 14227887 -168187355 + (TA)n Simple_repeat Simple_repeat 2 30 0 828 178 6 31 chr6 14227891 14228054 -168187188 - AluJo SINE Alu -37 275 117 825 153 0 0 chr6 14228090 14228214 -168187028 - AluJo SINE Alu -188 124 1 249 281 0 0 chr6 14228241 14228305 -168186937 - L2 LINE L2 -4 3309 3246 254 284 27 0 chr6 14228475 14228549 -168186693 + MIR3 SINE MIR 117 192 -16 2392 97 0 0 chr6 14228701 14228999 -168186243 + AluSq SINE Alu 1 298 -15 189 0 0 0 chr6 14228999 14229020 -168186222 + (TA)n Simple_repeat Simple_repeat 2 22 0 234 0 0 0 chr6 14229220 14229246 -168185996 + (T)n Simple_repeat Simple_repeat 1 26 0 2110 251 35 21 chr6 14230008 14230578 -168184664 - L1ME3A LINE L1 -36 6134 5557 893 222 168 32 chr6 14231468 14231783 -168183459 + L1ME3A LINE L1 5781 6138 -32 424 179 26 0 chr6 14231797 14231875 -168183367 - AluSx SINE Alu -27 282 203 3293 161 137 59 chr6 14231876 14232638 -168182604 - LTR12 LTR ERV1 -1 825 5 2455 182 25 24 chr6 14232654 14233247 -168181995 - pTR5 LTR ERV1 -1094 1344 751 278 139 0 12 chr6 14233247 14233294 -168181948 - AluSx SINE Alu -94 208 171 1040 118 0 0 chr6 14233294 14233430 -168181812 - AluSx SINE Alu -174 138 3 188 360 73 20 chr6 14233606 14233756 -168181486 - MIR SINE MIR -28 234 77 263 159 0 0 chr6 14233990 14234034 -168181208 - AluS SINE Alu -28 272 229 755 216 45 54 chr6 14234034 14234256 -168180986 + pTR5 LTR ERV1 745 964 -1474 2383 191 91 117 chr6 14234447 14235292 -168179950 + LTR12 LTR ERV1 3 825 -1 885 223 48 0 chr6 14235321 14235509 -168179733 - AluSx SINE Alu -107 205 9 1513 209 71 9 chr6 14236355 14236694 -168178548 - MLT1A2 LTR MaLR 0 374 15 254 277 15 0 chr6 14236694 14236759 -168178483 + MIR SINE MIR 171 236 -26 438 312 0 7 chr6 14236923 14237061 -168178181 - MIR SINE MIR -111 151 15 665 188 199 0 chr6 14237233 14237414 -168177828 - MER20 DNA MER1_type 0 219 3 218 370 51 61 chr6 14238291 14238586 -168176656 - L2 LINE L2 -2 3270 2979 22 35 0 0 chr6 14239292 14239321 -168175921 + AT_rich Low_complexity Low_complexity 1 29 0 2276 113 10 0 chr6 14239518 14239828 -168175414 - AluSp SINE Alu 0 313 1 1841 136 24 3 chr6 14239873 14240160 -168175082 + AluJo SINE Alu 5 297 -15 2380 85 0 0 chr6 14240163 14240457 -168174785 + AluY SINE Alu 1 294 -17 1608 239 42 52 chr6 14240547 14241162 -168174080 + L1MC5 LINE L1 6646 7252 -728 1186 246 58 81 chr6 14241296 14241514 -168173728 + L1MC5 LINE L1 7290 7511 -450 1859 168 58 34 chr6 14241514 14241895 -168173347 - MLT1B LTR MaLR 0 390 1 1186 246 58 81 chr6 14241895 14241991 -168173251 + L1MC5 LINE L1 7511 7608 -353 1610 197 3 16 chr6 14241991 14242296 -168172946 - AluJo SINE Alu -11 301 1 1186 246 58 81 chr6 14242296 14242550 -168172692 + L1MC5 LINE L1 7608 7846 -115 1836 127 0 72 chr6 14242550 14242696 -168172546 + AluJb SINE Alu 1 156 -161 2943 12 0 3 chr6 14242696 14243015 -168172227 + AluYb8 SINE Alu 1 318 0 1836 127 0 72 chr6 14243015 14243207 -168172035 + AluJb SINE Alu 156 317 0 347 195 0 35 chr6 14244125 14244212 -168171030 + L1MC5 LINE L1 7842 7925 -36 420 285 66 48 chr6 14244248 14244517 -168170725 + L1MC5 LINE L1 7514 7793 -168 360 0 0 0 chr6 14244517 14244557 -168170685 + (CA)n Simple_repeat Simple_repeat 2 41 0 420 285 66 48 chr6 14244557 14244666 -168170576 + L1MC5 LINE L1 7793 7899 -62 2304 100 0 28 chr6 14245069 14245389 -168169853 + AluSq SINE Alu 1 311 -2 274 0 73 0 chr6 14245389 14245430 -168169812 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 32 26 0 0 chr6 14245543 14245582 -168169660 + AT_rich Low_complexity Low_complexity 1 39 0 1766 208 46 11 chr6 14246867 14247233 -168168009 + MER57A LTR ERV1 11 389 -14 1322 94 0 0 chr6 14247233 14247403 -168167839 - AluSg/x SINE Alu -10 300 131 690 141 0 0 chr6 14247403 14247502 -168167740 + AluSq/x SINE Alu 9 107 -205 1941 129 57 0 chr6 14247912 14248191 -168167051 + AluSx SINE Alu 1 295 -17 290 301 44 15 chr6 14248222 14248358 -168166884 - MIR SINE MIR -72 190 51 688 230 16 27 chr6 14248402 14248589 -168166653 - MIR SINE MIR 0 262 78 642 207 68 81 chr6 14248845 14249291 -168165951 - LTR33 LTR ERVL -1 520 32 2211 91 35 0 chr6 14249419 14249704 -168165538 + AluSp SINE Alu 1 295 -18 1115 200 5 9 chr6 14249849 14250087 -168165155 + L1MA9 LINE L1 5555 5791 -500 254 247 0 22 chr6 14250105 14250194 -168165048 - L1MC4 LINE L1 -1339 6703 6617 * 274 253 0 40 chr6 14250133 14250232 -168165010 + L1MC4 LINE L1 6614 6708 -1334 * 2302 168 71 14 chr6 14250207 14250701 -168164541 + L1MA9 LINE L1 5783 6304 -8 253 228 79 71 chr6 14251750 14251877 -168163365 + L2 LINE L2 2379 2506 -808 2345 99 0 0 chr6 14251910 14252204 -168163038 + AluSx SINE Alu 1 294 -18 204 294 28 63 chr6 14252204 14252256 -168162986 - L2 LINE L2 -20 3293 3241 2339 97 0 3 chr6 14252256 14252554 -168162688 + AluSx SINE Alu 1 297 -15 204 294 28 63 chr6 14252554 14252644 -168162598 - L2 LINE L2 -72 3241 3156 599 303 139 9 chr6 14252814 14253144 -168162098 - MLT1L LTR MaLR -234 381 9 180 339 22 84 chr6 14253207 14253434 -168161808 + L2 LINE L2 2575 2787 -527 317 328 35 35 chr6 14253447 14253595 -168161647 - MIR SINE MIR -17 245 95 1997 161 92 65 chr6 14253595 14253662 -168161580 - MLT1D LTR MaLR 0 505 441 2111 124 3 0 chr6 14253662 14253975 -168161267 - AluSx SINE Alu 0 314 1 1997 161 92 65 chr6 14253975 14254397 -168160845 - MLT1D LTR MaLR -64 441 2 317 328 35 35 chr6 14254397 14254446 -168160796 - MIR SINE MIR -166 96 48 277 208 32 104 chr6 14254514 14254639 -168160603 + L2 LINE L2 2944 3059 -213 468 86 0 0 chr6 14254785 14254855 -168160387 + (TTGG)n Simple_repeat Simple_repeat 1 70 0 233 214 0 0 chr6 14255297 14255339 -168159903 + (CA)n Simple_repeat Simple_repeat 2 43 0 288 303 37 9 chr6 14255339 14255448 -168159794 - MIR SINE MIR -138 124 13 801 204 76 19 chr6 14255525 14255736 -168159506 - L1PA16 LINE L1 -4 6162 5940 2058 104 43 0 chr6 14256019 14256298 -168158944 + AluSq SINE Alu 1 291 -22 324 159 32 159 chr6 14257465 14257591 -168157651 + MER5B DNA MER1_type 50 159 -19 187 256 0 0 chr6 14257701 14257740 -168157502 - MER5B DNA MER1_type -76 102 64 1782 150 0 4 chr6 14257751 14258018 -168157224 - AluJb SINE Alu 0 312 47 252 205 64 39 chr6 14258604 14258682 -168156560 - MIR SINE MIR -93 115 36 417 237 122 35 chr6 14258729 14258978 -168156264 - MER46C DNA MER2_type -1 337 1 546 304 54 22 chr6 14259001 14259185 -168156057 - MIR SINE MIR -1 261 72 197 235 39 0 chr6 14260538 14260589 -168154653 + MIR SINE MIR 60 112 -96 358 351 18 0 chr6 14260593 14260704 -168154538 - L2 LINE L2 0 3272 3160 1049 176 5 5 chr6 14260713 14260901 -168154341 - MER5A DNA MER1_type -1 188 1 4224 191 41 22 chr6 14261159 14262082 -168153160 + L1MB8 LINE L1 4756 5703 -475 2308 96 3 0 chr6 14262082 14262374 -168152868 + AluSq SINE Alu 1 293 -20 4224 191 41 22 chr6 14262374 14262860 -168152382 + L1MB8 LINE L1 5703 6178 0 197 0 0 0 chr6 14263123 14263147 -168152095 + MER5A DNA MER1_type 1 24 -165 1320 176 52 0 chr6 14263148 14263381 -168151861 + L1MA9 LINE L1 5545 5789 -502 4492 160 36 31 chr6 14263391 14264749 -168150493 + pTR5 LTR ERV1 741 2430 -8 1820 188 51 44 chr6 14264759 14265006 -168150236 + L1MA9 LINE L1 5798 6051 -261 1853 174 0 0 chr6 14265006 14265299 -168149943 + AluSx SINE Alu 1 293 -19 1820 188 51 44 chr6 14265299 14265525 -168149717 + L1MA9 LINE L1 6051 6274 -38 28 29 0 0 chr6 14265525 14265560 -168149682 + AT_rich Low_complexity Low_complexity 1 35 0 901 164 42 0 chr6 14265565 14265730 -168149512 + MER5A DNA MER1_type 17 188 -1 444 333 35 22 chr6 14265835 14266063 -168149179 - L2 LINE L2 -575 2739 2509 1701 154 70 9 chr6 14266098 14266428 -168148814 - L1MB4 LINE L1 -1 6179 5830 2525 132 8 5 chr6 14266429 14267087 -168148155 + MER50 LTR ERV1 1 711 -23 295 148 0 19 chr6 14267093 14267147 -168148095 - L1MB4 LINE L1 -346 5828 5776 225 132 75 0 chr6 14267147 14267200 -168148042 + (TA)n Simple_repeat Simple_repeat 2 58 0 2570 178 39 29 chr6 14267204 14267841 -168147401 - L1MB4 LINE L1 -376 5804 5173 218 317 12 0 chr6 14267877 14267959 -168147283 - L2 LINE L2 -4 3309 3227 324 312 0 0 chr6 14268234 14268311 -168146931 - MER69 DNA AcHobo -2449 77 1 3545 103 9 59 chr6 14268541 14269185 -168146057 + MER4B LTR ERV1 1 779 0 1122 175 63 114 chr6 14269454 14269571 -168145671 + MER69 DNA AcHobo 2150 2271 -255 1067 93 0 182 chr6 14269571 14269807 -168145435 + 7SK RNA RNA 1 193 0 1122 175 63 114 chr6 14269807 14269957 -168145285 + MER69 DNA AcHobo 2271 2393 -133 2576 68 0 0 chr6 14269957 14270266 -168144976 - AluY SINE Alu -2 309 1 1122 175 63 114 chr6 14270266 14270392 -168144850 + MER69 DNA AcHobo 2393 2524 -2 648 233 0 0 chr6 14270736 14270865 -168144377 + FLAM_A SINE Alu 10 138 -4 2158 108 69 83 chr6 14270865 14271298 -168143944 + MSTA LTR MaLR 2 428 0 2259 107 0 10 chr6 14271904 14272212 -168143030 - AluSg SINE Alu -5 305 1 440 253 11 81 chr6 14272465 14272651 -168142591 + MER5B DNA MER1_type 3 175 -3 1430 243 60 72 chr6 14272679 14273378 -168141864 - HAL1 LINE L1 -748 1759 1069 1537 264 85 51 chr6 14273381 14274286 -168140956 + L1MC4a LINE L1 4582 5454 -692 782 55 0 18 chr6 14274286 14274395 -168140847 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1496 104 5 14 chr6 14274397 14274609 -168140633 - AluSg/x SINE Alu -23 287 78 1537 264 85 51 chr6 14274609 14275025 -168140217 + L1MC4a LINE L1 5454 5362 -784 1697 168 30 40 chr6 14275025 14275328 -168139914 + AluSx SINE Alu 1 300 -12 1537 264 85 51 chr6 14275328 14275373 -168139869 + L1MC4a LINE L1 5361 5403 -743 362 304 182 12 chr6 14275494 14275747 -168139495 - MLT1J LTR MaLR -1 510 215 401 268 64 75 chr6 14275853 14276133 -168139109 - HAL1 LINE L1 -1613 894 618 249 189 0 0 chr6 14276278 14276315 -168138927 + MER20 DNA MER1_type 1 37 -182 485 146 212 66 chr6 14276318 14276469 -168138773 - MER53 DNA DNA -1 188 16 * 1026 204 32 0 chr6 14276464 14276650 -168138592 + MER20 DNA MER1_type 25 216 -3 2542 53 0 13 chr6 14278192 14278492 -168136750 + AluSc SINE Alu 1 296 -13 1393 148 27 46 chr6 14278577 14278840 -168136402 - AluJo SINE Alu -25 287 30 467 230 50 93 chr6 14278960 14279238 -168136004 - L1ME4a LINE L1 -229 5892 5627 606 272 17 35 chr6 14279894 14280067 -168135175 - L3b LINE CR1 -157 1426 1257 2007 120 57 0 chr6 14280194 14280477 -168134765 - AluSx SINE Alu -13 299 1 186 316 35 0 chr6 14281733 14281790 -168133452 - MIR SINE MIR -24 238 180 2573 181 45 11 chr6 14281803 14282266 -168132976 + LTR45B LTR ERV1 3 481 -8 479 296 0 52 chr6 14282270 14282405 -168132837 - MIR SINE MIR -104 158 31 1515 110 5 41 chr6 14332408 14332626 -168082616 + AluSq SINE Alu 94 303 -10 1645 151 12 47 chr6 14332636 14332955 -168082287 + AluJo SINE Alu 5 312 0 1036 69 0 0 chr6 14333227 14333358 -168081884 + AluSc SINE Alu 1 131 -178 27 0 0 0 chr6 14333358 14333385 -168081857 + AT_rich Low_complexity Low_complexity 1 27 0 1138 150 6 0 chr6 14333418 14333591 -168081651 + AluSg/x SINE Alu 131 304 -8 2500 166 31 9 chr6 14333672 14334125 -168081117 - MLT1C LTR MaLR -4 463 1 1811 140 7 7 chr6 14334333 14334604 -168080638 - AluSx SINE Alu -29 283 13 260 256 64 64 chr6 14334729 14334854 -168080388 - MIR SINE MIR -132 130 6 1747 104 0 90 chr6 14334983 14335272 -168079970 - AluSq SINE Alu -20 293 31 3695 169 107 39 chr6 14335272 14336574 -168078668 + pTR5 LTR ERV1 743 2438 0 2030 118 38 0 chr6 14337344 14337631 -168077611 + AluSx SINE Alu 1 298 -14 910 182 13 0 chr6 14337631 14337790 -168077452 + AluJb SINE Alu 134 294 -18 479 290 37 25 chr6 14337889 14338051 -168077191 + MIR3 SINE MIR 17 180 -28 210 206 0 0 chr6 14338081 14338144 -168077098 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2353 79 0 3 chr6 14338157 14338460 -168076782 + AluSx SINE Alu 1 302 -10 2029 105 51 3 chr6 14338726 14339021 -168076221 - AluSx SINE Alu -3 309 1 352 288 75 7 chr6 14339165 14339311 -168075931 - MIR3 SINE MIR -50 158 3 27 0 0 0 chr6 14339365 14339392 -168075850 + AT_rich Low_complexity Low_complexity 1 27 0 2701 213 73 47 chr6 14339472 14339752 -168075490 - L1ME2 LINE L1 -44 6120 5849 2187 113 0 0 chr6 14339752 14340060 -168075182 + AluSx SINE Alu 1 308 0 2701 213 73 47 chr6 14340060 14341174 -168074068 - L1ME2 LINE L1 -315 5849 4686 2408 88 3 0 chr6 14341174 14341480 -168073762 + AluSp SINE Alu 1 307 -6 2701 213 73 47 chr6 14341480 14341602 -168073640 - L1ME2 LINE L1 -1478 4686 4569 404 338 6 6 chr6 14341631 14341788 -168073454 - L1MEd LINE L1 -5367 752 596 2006 146 7 3 chr6 14342395 14342704 -168072538 - AluSg SINE Alu 0 310 1 183 80 0 0 chr6 14343000 14343025 -168072217 + (A)n Simple_repeat Simple_repeat 1 25 0 2275 91 3 10 chr6 14343199 14343495 -168071747 - AluSg SINE Alu -16 294 1 948 207 50 18 chr6 14343590 14343812 -168071430 - MIR SINE MIR -26 236 8 182 250 0 0 chr6 14344138 14344174 -168071068 - L2 LINE L2 -24 3289 3254 314 346 96 60 chr6 14346013 14346345 -168068897 - L2 LINE L2 0 3272 2929 257 275 30 131 chr6 14346334 14346503 -168068739 + MIR SINE MIR 20 169 -65 * 21 57 0 0 chr6 14346817 14346852 -168068390 + AT_rich Low_complexity Low_complexity 1 35 0 340 183 0 87 chr6 14348337 14348441 -168066801 - MIR SINE MIR -62 146 99 753 164 0 15 chr6 14348710 14348844 -168066398 + FLAM_C SINE Alu 1 132 -1 23 0 0 0 chr6 14349098 14349121 -168066121 + AT_rich Low_complexity Low_complexity 1 23 0 2195 86 0 17 chr6 14349348 14349639 -168065603 - AluSg SINE Alu -24 286 1 2745 134 125 15 chr6 14350494 14351039 -168064203 + L1MB3 LINE L1 5572 6176 -7 184 425 78 26 chr6 14351847 14352000 -168063242 - L2 LINE L2 -4 3268 3108 26 50 0 0 chr6 14352324 14352364 -168062878 + AT_rich Low_complexity Low_complexity 1 40 0 40 49 0 0 chr6 14352523 14352584 -168062658 + AT_rich Low_complexity Low_complexity 1 61 0 479 285 73 19 chr6 14355710 14355886 -168059356 - MIR SINE MIR -66 142 7 237 247 0 17 chr6 14356229 14356288 -168058954 - MIR3 SINE MIR -51 157 99 2160 122 3 0 chr6 14356289 14356600 -168058642 + AluSq SINE Alu 1 312 -1 304 358 44 0 chr6 14357158 14357295 -168057947 + L1MC/D LINE L1 5455 5597 -2211 477 243 77 12 chr6 14357419 14357588 -168057654 - MER104 DNA Tc2 0 180 1 1301 154 49 45 chr6 14358082 14358303 -168056939 - L1MB8 LINE L1 -65 6113 5889 2233 88 34 3 chr6 14358303 14358597 -168056645 - AluSc SINE Alu -4 305 3 1301 154 49 45 chr6 14358597 14358642 -168056600 - L1MB8 LINE L1 -289 5889 5846 286 119 0 0 chr6 14359003 14359045 -168056197 - L1MB8 LINE L1 -65 6113 6072 180 0 0 0 chr6 14359623 14359643 -168055599 + (A)n Simple_repeat Simple_repeat 1 20 0 691 248 95 0 chr6 14359871 14360093 -168055149 + L2 LINE L2 1710 1952 -1362 24 0 0 0 chr6 14360239 14360263 -168054979 + AT_rich Low_complexity Low_complexity 1 24 0 538 217 0 0 chr6 14360320 14360426 -168054816 - FLAM_C SINE Alu -1 142 37 479 194 71 10 chr6 14360606 14360704 -168054538 + HsTC2 DNA Tc2 43 146 -1752 279 238 69 29 chr6 14360782 14360925 -168054317 + HsTC2 DNA Tc2 1260 1591 -307 1245 150 0 5 chr6 14360925 14361118 -168054124 + AluJb SINE Alu 84 275 -37 944 221 80 23 chr6 14361121 14361420 -168053822 + HsTC2 DNA Tc2 1579 1894 -4 773 252 66 84 chr6 14361453 14361551 -168053691 + L2 LINE L2 2588 2686 -627 2436 65 0 19 chr6 14361551 14361861 -168053381 - AluY SINE Alu -7 304 1 773 252 66 84 chr6 14361861 14362501 -168052741 + L2 LINE L2 2686 3311 -2 308 288 40 71 chr6 14362967 14363165 -168052077 + MARNA DNA Mariner 27 218 -368 424 252 50 19 chr6 14363382 14363541 -168051701 + MARNA DNA Mariner 327 490 -96 255 291 101 50 chr6 14363635 14363814 -168051428 + MIR3 SINE MIR 20 207 -1 21 36 0 0 chr6 14363873 14363901 -168051341 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr6 14364136 14364195 -168051047 + AT_rich Low_complexity Low_complexity 1 59 0 683 226 113 15 chr6 14364759 14364963 -168050279 - MER58A DNA MER1_type 0 224 1 476 231 153 26 chr6 14365041 14365270 -168049972 - MIR SINE MIR -1 261 4 1933 143 16 7 chr6 14365351 14365658 -168049584 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr6 14365744 14365765 -168049477 + AT_rich Low_complexity Low_complexity 1 21 0 2130 124 0 3 chr6 14368488 14368794 -168046448 + AluSx SINE Alu 1 305 -7 456 19 0 0 chr6 14369404 14369457 -168045785 + (CA)n Simple_repeat Simple_repeat 1 53 0 403 311 92 13 chr6 14369851 14370166 -168045076 + L1 LINE L1 3919 4258 -1888 1388 206 7 22 chr6 14370393 14370669 -168044573 + AluJb SINE Alu 6 277 -35 449 312 88 18 chr6 14371917 14372305 -168042937 + HAL1 LINE L1 1370 1784 -723 349 250 92 32 chr6 14372349 14372601 -168042641 + L1ME2 LINE L1 1330 1722 -5225 1670 188 52 20 chr6 14372605 14372951 -168042291 + MLT1A1 LTR MaLR 1 357 -8 983 236 141 25 chr6 14372951 14373585 -168041657 + L1ME2 LINE L1 1717 2410 -4547 338 242 103 48 chr6 14373590 14373755 -168041487 + L1ME2 LINE L1 2583 2756 -4382 2137 269 94 7 chr6 14373838 14374667 -168040575 + L1ME2 LINE L1 4569 5469 -1488 1126 199 61 0 chr6 14374663 14374925 -168040317 + L1MA4 LINE L1 6018 6295 -5 * 2995 246 47 20 chr6 14374940 14376290 -168038952 + L1ME2 LINE L1 5454 6964 -11 1147 157 106 75 chr6 14376647 14376940 -168038302 + AluJb SINE Alu 1 302 0 1457 143 30 158 chr6 14377641 14378034 -168037208 + Tigger3(Golem) DNA MER2_type 1 3023 -6 6707 208 65 40 chr6 14378061 14379748 -168035494 + L1MB7 LINE L1 3836 5479 -1516 1506 174 20 33 chr6 14379748 14380053 -168035189 - AluJb SINE Alu -9 303 3 6707 208 65 40 chr6 14380053 14380169 -168035073 + L1MB7 LINE L1 5479 5591 -1404 1820 178 0 10 chr6 14380169 14380467 -168034775 + AluSx SINE Alu 1 295 -17 6707 208 65 40 chr6 14380467 14380676 -168034566 + L1MB7 LINE L1 5591 5793 -1202 2410 81 0 13 chr6 14380676 14380983 -168034259 + AluY SINE Alu 1 303 -8 6707 208 65 40 chr6 14380983 14381966 -168033276 + L1MB7 LINE L1 5793 6995 0 706 277 162 9 chr6 14381957 14382376 -168032866 + L1MCa LINE L1 140 622 -5942 * 2243 215 147 26 chr6 14382369 14383968 -168031274 + L1MCa LINE L1 498 2535 -4029 1881 154 20 3 chr6 14383968 14384260 -168030982 + AluJb SINE Alu 1 297 -15 2243 215 147 26 chr6 14384260 14384630 -168030612 + L1MCa LINE L1 2535 2859 -3705 3335 109 4 30 chr6 14384642 14385135 -168030107 + LTR3b LTR ERVK 21 500 0 2707 242 85 30 chr6 14385138 14385801 -168029441 + L1MCa LINE L1 2864 3603 -2961 216 0 0 0 chr6 14385801 14385825 -168029417 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2707 242 85 30 chr6 14385825 14386178 -168029064 + L1MCa LINE L1 3603 3935 -2629 275 220 17 0 chr6 14386227 14386286 -168028956 + L1MC4a LINE L1 6624 6683 -1125 3695 221 29 62 chr6 14386426 14387569 -168027673 + L1MCa LINE L1 3867 4971 -1593 1830 181 3 3 chr6 14387997 14388296 -168026946 + AluJb SINE Alu 1 299 -13 1462 228 67 13 chr6 14388577 14388963 -168026279 + MER74B LTR ERVL 139 545 -77 25 0 0 0 chr6 14389768 14389793 -168025449 + AT_rich Low_complexity Low_complexity 1 25 0 336 210 16 0 chr6 14390241 14390303 -168024939 + U7 snRNA snRNA 1 63 0 325 289 218 30 chr6 14390306 14390617 -168024625 + HAL1b LINE L1 98 349 -999 1761 161 0 55 chr6 14390617 14390946 -168024296 + AluJb SINE Alu 1 311 -1 325 289 218 30 chr6 14390946 14391239 -168024003 + HAL1b LINE L1 349 816 -532 1078 196 107 38 chr6 14391252 14391569 -168023673 + L1ME1 LINE L1 5811 6149 -17 313 187 27 27 chr6 14391909 14391984 -168023258 + L1MC4a LINE L1 5957 6031 -1777 2144 114 7 10 chr6 14392022 14392321 -168022921 - AluSx SINE Alu -12 300 3 326 261 142 60 chr6 14392327 14392545 -168022697 + L1MC4a LINE L1 6108 6343 -1465 24 0 0 0 chr6 14392551 14392575 -168022667 + AT_rich Low_complexity Low_complexity 1 24 0 1816 115 7 11 chr6 14392618 14392887 -168022355 - AluSq SINE Alu -19 294 27 271 295 60 20 chr6 14393029 14393178 -168022064 + L1MC4 LINE L1 7872 8026 -16 350 200 47 118 chr6 14393760 14393930 -168021312 + L1ME4a LINE L1 5964 6121 0 367 267 43 35 chr6 14394293 14394409 -168020833 - L2 LINE L2 -4 3309 3193 206 359 148 0 chr6 14394798 14394926 -168020316 - L2 LINE L2 -10 3262 3116 576 228 56 41 chr6 14395218 14395418 -168019824 + L1ME LINE L1 5543 5662 -459 882 162 6 62 chr6 14395565 14395744 -168019498 + AluJo SINE Alu 114 282 -30 2307 88 0 10 chr6 14395809 14396105 -168019137 + AluSc SINE Alu 1 293 -16 22 0 0 0 chr6 14396262 14396284 -168018958 + GC_rich Low_complexity Low_complexity 1 22 0 1682 170 18 0 chr6 14396284 14396441 -168018801 - AluJo SINE Alu -30 282 116 2204 112 7 3 chr6 14396441 14396746 -168018496 - AluSx SINE Alu -6 306 1 1682 170 18 0 chr6 14396746 14396865 -168018377 - AluJo SINE Alu -196 116 1 270 318 100 6 chr6 14397234 14397404 -168017838 + L2 LINE L2 2090 2275 -1039 1055 124 6 19 chr6 14397503 14397664 -168017578 + FRAM SINE Alu 1 159 -17 266 71 0 24 chr6 14398120 14398162 -168017080 + (CAG)n Simple_repeat Simple_repeat 1 41 0 317 248 223 25 chr6 14398220 14398377 -168016865 - MIR SINE MIR -18 244 57 283 321 12 111 chr6 14398647 14398809 -168016433 + L2 LINE L2 3107 3252 -20 1475 177 23 35 chr6 14399034 14399344 -168015898 + AluJo SINE Alu 3 308 -4 1978 152 3 10 chr6 14399426 14399735 -168015507 - AluSx SINE Alu -5 307 1 691 203 31 0 chr6 14400148 14400276 -168014966 + Tigger3(Golem) DNA MER2_type 2897 3028 -1 2086 127 13 7 chr6 14401045 14401344 -168013898 + AluSx SINE Alu 1 301 -11 29 0 0 0 chr6 14401389 14401418 -168013824 + AT_rich Low_complexity Low_complexity 1 29 0 1833 123 22 7 chr6 14401807 14402120 -168013122 - AluSg SINE Alu 0 318 2 2192 96 30 0 chr6 14402415 14402716 -168012526 + AluSq SINE Alu 1 310 -3 2208 118 0 3 chr6 14402731 14403035 -168012207 + AluSx SINE Alu 1 303 -9 708 151 66 20 chr6 14403468 14403620 -168011622 + L1ME1 LINE L1 5392 5550 -616 1047 117 0 7 chr6 14403626 14403780 -168011462 + AluSq SINE Alu 1 153 -160 2308 112 0 0 chr6 14403922 14404234 -168011008 + AluSx SINE Alu 1 312 0 1950 222 75 10 chr6 14404240 14404722 -168010520 + L1ME1 LINE L1 5543 6055 -111 1433 179 18 47 chr6 14404724 14404998 -168010244 + Tigger7 DNA MER2_type 2 267 -466 658 149 0 0 chr6 14404999 14405093 -168010149 + Tigger7 DNA MER2_type 2390 2483 -4 412 224 35 26 chr6 14405094 14405210 -168010032 + L1ME1 LINE L1 6050 6166 0 216 0 0 0 chr6 14405563 14405587 -168009655 + (T)n Simple_repeat Simple_repeat 1 24 0 338 299 142 8 chr6 14405597 14405731 -168009511 - L2 LINE L2 -962 2352 2201 273 314 6 63 chr6 14406228 14406387 -168008855 + MER5B DNA MER1_type 4 153 -25 21 0 0 0 chr6 14408559 14408580 -168006662 + AT_rich Low_complexity Low_complexity 1 21 0 730 207 73 69 chr6 14408801 14409047 -168006195 - MIR SINE MIR 0 262 16 21 0 0 0 chr6 14409499 14409520 -168005722 + AT_rich Low_complexity Low_complexity 1 21 0 1058 158 163 5 chr6 14409594 14409742 -168005500 - MER46A DNA MER2_type -2495 236 46 2152 120 10 0 chr6 14409742 14410041 -168005201 + AluSx SINE Alu 1 302 -10 1058 158 163 5 chr6 14410041 14410095 -168005147 - MER46A DNA MER2_type -2685 46 2 241 347 127 41 chr6 14410511 14410756 -168004486 + L2 LINE L2 2826 3091 -181 2099 123 10 3 chr6 14411652 14411960 -168003282 + AluSx SINE Alu 1 310 -2 1640 109 0 0 chr6 14412322 14412533 -168002709 + AluSq SINE Alu 1 211 -102 542 297 63 18 chr6 14412884 14413170 -168002072 + L2 LINE L2 1698 1996 -1318 793 233 7 7 chr6 14413189 14413335 -168001907 - AluJb SINE Alu -27 285 140 333 321 79 21 chr6 14413400 14413590 -168001652 + L2 LINE L2 2100 2300 -1014 365 373 115 16 chr6 14414138 14414503 -168000739 + L2 LINE L2 2407 2807 -507 1847 164 0 10 chr6 14414507 14414811 -168000431 + AluJb SINE Alu 1 301 -11 190 328 113 55 chr6 14414914 14415225 -168000017 + L2 LINE L2 2943 3271 -1 2205 127 0 10 chr6 14415283 14415597 -167999645 + AluSx SINE Alu 1 311 -1 2312 71 0 26 chr6 14415741 14416052 -167999190 + AluY SINE Alu 1 303 -8 2172 82 0 3 chr6 14416239 14416521 -167998721 + AluY SINE Alu 17 297 -14 2336 84 0 10 chr6 14416574 14416871 -167998371 + AluSc SINE Alu 1 294 -15 2123 109 13 26 chr6 14416881 14417185 -167998057 + AluSx SINE Alu 1 300 -12 1652 135 90 11 chr6 14417209 14417476 -167997766 - AluJo SINE Alu -20 292 5 1569 209 3 17 chr6 14418301 14418588 -167996654 + AluJb SINE Alu 1 283 -19 252 0 0 0 chr6 14418981 14419009 -167996233 + (CA)n Simple_repeat Simple_repeat 1 28 0 310 292 0 10 chr6 14419380 14419476 -167995766 - MIR3 SINE MIR 0 208 114 22 0 0 0 chr6 14419585 14419607 -167995635 + AT_rich Low_complexity Low_complexity 1 22 0 321 292 82 47 chr6 14421302 14421473 -167993769 - L1M2 LINE L1 -6038 811 635 213 39 0 0 chr6 14421595 14421612 -167993630 + (CTG)n Simple_repeat Simple_repeat 1 43 0 213 39 0 0 chr6 14421612 14421638 -167993604 + (CTG)n Simple_repeat Simple_repeat 3 28 0 211 257 9 53 chr6 14421839 14421952 -167993290 + G-rich Low_complexity Low_complexity 6 113 0 254 167 37 74 chr6 14422003 14422111 -167993131 + (CGGGG)n Simple_repeat Simple_repeat 5 108 0 186 43 0 0 chr6 14423261 14423284 -167991958 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2027 99 8 0 chr6 14423285 14423548 -167991694 - AluSx SINE Alu -47 265 1 249 257 52 81 chr6 14423935 14424071 -167991171 + L1ME LINE L1 5494 5625 -496 205 133 0 0 chr6 14424338 14424368 -167990874 - MER91 DNA MER1_type -36 160 131 515 277 74 7 chr6 14424757 14424905 -167990337 - LTR67 LTR ERVL 0 557 400 2247 219 81 20 chr6 14425463 14426006 -167989236 - MLT1E LTR MaLR 0 593 18 1231 217 14 0 chr6 14426095 14426316 -167988926 - MER58A DNA MER1_type 0 224 1 4610 166 63 39 chr6 14426739 14428253 -167986989 + pTR5 LTR ERV1 742 2438 0 2104 162 22 11 chr6 14428254 14428618 -167986624 + THE1C LTR MaLR 8 375 0 1029 189 71 89 chr6 14428636 14428986 -167986256 + MER2 DNA MER2_type 1 344 0 327 291 0 25 chr6 14429029 14429108 -167986134 - MER5A DNA MER1_type -95 94 18 1458 170 22 11 chr6 14429138 14429409 -167985833 - AluJo SINE Alu -38 274 1 1831 150 3 17 chr6 14429931 14430231 -167985011 - AluJo SINE Alu -16 296 1 846 134 0 0 chr6 14430285 14430404 -167984838 + FLAM_C SINE Alu 1 119 -24 207 0 0 0 chr6 14430405 14430428 -167984814 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2251 93 28 0 chr6 14430439 14430730 -167984512 + AluSg SINE Alu 1 299 -11 238 278 0 14 chr6 14430930 14431002 -167984240 + A-rich Low_complexity Low_complexity 5 75 0 240 289 99 92 chr6 14431119 14431261 -167983981 - L2 LINE L2 -1 3271 3129 2053 118 35 0 chr6 14431320 14431609 -167983633 - AluSq SINE Alu -14 299 1 2415 88 0 0 chr6 14432040 14432346 -167982896 + AluSg SINE Alu 1 306 -4 2063 117 0 7 chr6 14432849 14433148 -167982094 + AluSx SINE Alu 1 297 -15 1641 198 118 32 chr6 14433294 14433759 -167981483 + MLT1D LTR MaLR 1 505 0 1131 271 89 26 chr6 14434297 14434722 -167980520 - LTR16A1 LTR ERVL 0 457 6 2126 127 3 0 chr6 14434729 14435028 -167980214 - AluSx SINE Alu -12 300 1 359 292 0 10 chr6 14435565 14435661 -167979581 - MER102b DNA MER1_type 0 341 247 2466 59 0 0 chr6 14436156 14436462 -167978780 + AluY SINE Alu 1 306 -5 3541 143 28 69 chr6 14436499 14436779 -167978463 + L1MB8 LINE L1 5482 5772 -406 1741 136 32 4 chr6 14436779 14437058 -167978184 + AluJb SINE Alu 1 287 -25 3541 143 28 69 chr6 14437058 14437499 -167977743 + L1MB8 LINE L1 5772 6173 -5 297 215 13 38 chr6 14437564 14437643 -167977599 + L2 LINE L2 3234 3310 -3 197 256 0 0 chr6 14437757 14437796 -167977446 + L2 LINE L2 3215 3253 -19 316 119 107 6 chr6 14438003 14438087 -167977155 - MER5A DNA MER1_type 0 189 47 25 0 0 0 chr6 14438105 14438130 -167977112 + AT_rich Low_complexity Low_complexity 1 25 0 2437 207 79 2 chr6 14438180 14439154 -167976088 - L1MC4 LINE L1 -143 7899 6691 2224 231 60 33 chr6 14439156 14439530 -167975712 - MLT1E LTR MaLR 0 593 231 1870 122 7 11 chr6 14439530 14439809 -167975433 + AluJb SINE Alu 13 290 -22 2155 121 0 0 chr6 14439814 14440120 -167975122 + AluSx SINE Alu 1 306 -6 2224 231 60 33 chr6 14440120 14440304 -167974938 - MLT1E LTR MaLR -365 228 15 643 221 43 0 chr6 14440390 14440553 -167974689 - L1MC4 LINE L1 -1372 6670 6501 300 237 17 0 chr6 14440553 14440612 -167974630 + L1MCa LINE L1 2005 2064 -4362 * 351 247 115 77 chr6 14440569 14440666 -167974576 - L1MC4 LINE L1 -1339 6703 6611 1501 131 5 0 chr6 14440666 14440888 -167974354 - AluSg/x SINE Alu -13 297 75 351 247 115 77 chr6 14440888 14440972 -167974270 - L1MC4 LINE L1 -1431 6611 6515 1902 138 24 0 chr6 14441714 14442010 -167973232 - AluSq SINE Alu -10 303 1 2241 93 0 0 chr6 14442816 14443107 -167972135 + AluSx SINE Alu 1 291 -21 288 77 0 0 chr6 14443697 14443736 -167971506 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr6 14443890 14443914 -167971328 + (T)n Simple_repeat Simple_repeat 1 24 0 312 261 116 58 chr6 14444281 14444419 -167970823 + MIR3 SINE MIR 2 147 -61 1415 162 41 48 chr6 14444683 14444936 -167970306 + L1MB4 LINE L1 5887 6139 -41 1675 185 0 7 chr6 14444936 14445233 -167970009 + AluJb SINE Alu 1 295 -17 1415 162 41 48 chr6 14445233 14445269 -167969973 + L1MB4 LINE L1 6139 6174 -6 490 271 20 13 chr6 14445304 14445455 -167969787 + L1MC4a LINE L1 5771 5922 -1886 786 224 0 12 chr6 14445463 14445624 -167969618 - MIR SINE MIR -43 219 61 2150 109 0 6 chr6 14445627 14445939 -167969303 - AluSg SINE Alu 0 310 1 529 239 168 7 chr6 14445970 14446125 -167969117 + MER5A DNA MER1_type 4 183 -6 2365 67 0 13 chr6 14446431 14446746 -167968496 - AluY SINE Alu 0 311 1 292 189 0 0 chr6 14447216 14447269 -167967973 + MIR SINE MIR 100 152 -110 337 87 0 0 chr6 14447305 14447351 -167967891 + MER91B DNA MER1_type 18 63 -127 330 282 0 0 chr6 14447384 14447469 -167967773 + MIR SINE MIR 168 252 -10 1074 75 0 0 chr6 14447732 14447866 -167967376 + AluSq/x SINE Alu 1 134 -179 623 299 49 20 chr6 14447892 14448136 -167967106 + MIR SINE MIR 12 262 0 2243 105 0 0 chr6 14448525 14448831 -167966411 - AluSx SINE Alu -6 306 1 2191 96 7 0 chr6 14448842 14449145 -167966097 - AluSp SINE Alu -7 306 2 26 0 0 0 chr6 14449558 14449584 -167965658 + AT_rich Low_complexity Low_complexity 1 26 0 399 289 10 0 chr6 14449584 14449681 -167965561 - L1MC4 LINE L1 -1339 6703 6606 31 96 0 0 chr6 14449731 14449825 -167965417 + AT_rich Low_complexity Low_complexity 1 94 0 1946 119 10 0 chr6 14449881 14450174 -167965068 - AluSx SINE Alu -16 296 1 2177 100 3 29 chr6 14450242 14450552 -167964690 + AluSq SINE Alu 2 303 -10 1498 144 13 48 chr6 14450568 14450881 -167964361 + AluJo SINE Alu 11 312 0 30 0 0 0 chr6 14450921 14450951 -167964291 + AT_rich Low_complexity Low_complexity 1 30 0 1915 107 3 57 chr6 14451153 14451298 -167963944 + AluSc SINE Alu 1 121 -188 261 57 0 0 chr6 14451298 14451333 -167963909 + (TA)n Simple_repeat Simple_repeat 1 35 0 1915 107 3 57 chr6 14451333 14451505 -167963737 + AluSc SINE Alu 121 301 -8 2554 170 31 7 chr6 14451585 14452037 -167963205 - MLT1C LTR MaLR -4 463 1 1711 140 7 7 chr6 14452245 14452516 -167962726 - AluSx SINE Alu -29 283 13 284 256 64 64 chr6 14452641 14452766 -167962476 - MIR SINE MIR -132 130 6 1668 104 0 90 chr6 14452895 14453184 -167962058 - AluSq SINE Alu -20 293 31 3968 167 107 39 chr6 14453184 14454487 -167960755 + pTR5 LTR ERV1 743 2438 0 1958 115 38 0 chr6 14455259 14455546 -167959696 + AluSx SINE Alu 1 298 -14 858 182 13 0 chr6 14455546 14455705 -167959537 + AluJb SINE Alu 134 294 -18 482 287 40 29 chr6 14455804 14455978 -167959264 + MIR3 SINE MIR 17 192 -16 210 206 0 0 chr6 14455996 14456059 -167959183 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2184 92 0 3 chr6 14456072 14456365 -167958877 + AluSq SINE Alu 1 292 -21 2084 102 0 3 chr6 14456616 14456900 -167958342 - AluSc SINE Alu -20 289 7 467 284 22 40 chr6 14456955 14457177 -167958065 - L1MC/D LINE L1 -2287 5521 5304 434 204 35 56 chr6 14457345 14457487 -167957755 + MER58C DNA MER1_type 67 205 -10 2109 39 0 4 chr6 14457652 14457909 -167957333 + AluY SINE Alu 46 301 -10 1969 102 51 3 chr6 14458175 14458470 -167956772 - AluSx SINE Alu -3 309 1 377 288 75 7 chr6 14458614 14458760 -167956482 - MIR3 SINE MIR -50 158 3 27 0 0 0 chr6 14458814 14458841 -167956401 + AT_rich Low_complexity Low_complexity 1 27 0 2752 221 44 59 chr6 14458921 14459201 -167956041 - L1ME2 LINE L1 -44 6120 5837 2095 113 0 0 chr6 14459201 14459521 -167955721 + AluSx SINE Alu 1 320 0 2752 221 44 59 chr6 14459521 14460119 -167955123 - L1ME2 LINE L1 -327 5837 5254 2235 220 33 22 chr6 14460146 14460623 -167954619 - L1ME2 LINE L1 -971 5175 4688 2332 88 3 0 chr6 14460623 14460930 -167954312 + AluSp SINE Alu 1 308 -5 2235 220 33 22 chr6 14460930 14461052 -167954190 - L1ME2 LINE L1 -1458 4688 4569 385 319 19 19 chr6 14461081 14461238 -167954004 - L1MEd LINE L1 -5367 752 596 2125 120 0 13 chr6 14461845 14462161 -167953081 - AluSx SINE Alu 0 312 1 215 280 200 32 chr6 14462229 14462354 -167952888 + MER5A DNA MER1_type 21 166 -23 * 516 242 174 8 chr6 14462247 14462379 -167952863 - MER5A DNA MER1_type -26 163 10 442 88 0 0 chr6 14462404 14462461 -167952781 + AluSg/x SINE Alu 156 212 -100 1755 111 8 11 chr6 14462462 14462715 -167952527 + AluSx SINE Alu 32 285 -27 210 71 0 0 chr6 14462715 14462743 -167952499 + (TAAAG)n Simple_repeat Simple_repeat 2 29 0 2168 106 0 3 chr6 14462824 14463125 -167952117 - AluSg SINE Alu -10 300 1 1991 91 10 49 chr6 14463966 14464274 -167950968 - AluSx SINE Alu -16 296 1 594 249 158 39 chr6 14464285 14464570 -167950672 - L2 LINE L2 -5 3308 2990 22 0 0 0 chr6 14464739 14464761 -167950481 + AT_rich Low_complexity Low_complexity 1 22 0 329 217 57 74 chr6 14464841 14464989 -167950253 - L2 LINE L2 -207 3065 2923 1600 260 114 41 chr6 14465926 14466055 -167949187 + L2 LINE L2 1710 1828 -1486 2064 119 0 3 chr6 14466055 14466211 -167949031 - AluSx SINE Alu -20 292 136 2357 72 0 0 chr6 14466211 14466504 -167948738 - AluSc SINE Alu -16 293 1 2064 119 0 3 chr6 14466504 14466640 -167948602 - AluSx SINE Alu -176 136 1 1600 260 114 41 chr6 14466640 14466967 -167948275 + L2 LINE L2 1828 2130 -1184 1633 149 31 76 chr6 14466967 14467054 -167948188 + MER44D DNA MER2_type 1 90 -2401 1948 106 27 20 chr6 14467054 14467182 -167948060 + AluSx SINE Alu 1 127 -185 2063 132 0 3 chr6 14467182 14467492 -167947750 + AluSg1 SINE Alu 1 309 0 1948 106 27 20 chr6 14467492 14467655 -167947587 + AluSx SINE Alu 127 294 -18 1633 149 31 76 chr6 14467655 14467922 -167947320 + MER44D DNA MER2_type 90 609 0 1600 260 114 41 chr6 14467922 14468103 -167947139 + L2 LINE L2 2130 2395 -919 2717 158 32 29 chr6 14468105 14468478 -167946764 + MLT1D LTR MaLR 12 390 -115 1251 138 142 58 chr6 14468478 14468778 -167946464 - AluSx SINE Alu 0 324 3 2717 158 32 29 chr6 14468778 14468895 -167946347 + MLT1D LTR MaLR 390 505 0 1471 279 55 4 chr6 14468895 14469368 -167945874 + L2 LINE L2 2392 2888 -426 1108 251 47 33 chr6 14469395 14469754 -167945488 + LTR16A LTR ERVL 67 430 -20 1110 297 58 20 chr6 14469767 14470161 -167945081 + L2 LINE L2 2883 3291 -22 323 323 22 9 chr6 14470598 14470741 -167944501 + MIR SINE MIR 34 179 -62 2129 81 3 3 chr6 14472153 14472564 -167942678 - AluSq SINE Alu 0 411 1 354 23 0 0 chr6 14473343 14473386 -167941856 + (CA)n Simple_repeat Simple_repeat 2 44 0 1071 255 63 94 chr6 14474071 14474624 -167940618 + MLT1F LTR MaLR 7 542 0 1976 110 65 0 chr6 14474646 14474937 -167940305 - AluSg SINE Alu 0 310 1 2334 86 0 10 chr6 14474939 14475252 -167939990 - AluSx SINE Alu -2 310 1 628 184 97 92 chr6 14475367 14475465 -167939777 + MER5A DNA MER1_type 2 103 -86 2079 87 0 63 chr6 14475465 14475797 -167939445 + AluY SINE Alu 1 311 0 628 184 97 92 chr6 14475797 14475883 -167939359 + MER5A DNA MER1_type 103 187 -2 240 190 0 69 chr6 14475887 14475924 -167939318 + MLT1L LTR MaLR 148 181 -434 3154 110 131 8 chr6 14475924 14476452 -167938790 - LTR59 LTR ERV1 -4 593 1 240 190 0 69 chr6 14476452 14476472 -167938770 + MLT1L LTR MaLR 181 201 -414 600 270 128 18 chr6 14476552 14476778 -167938464 + MLT1L LTR MaLR 365 615 0 2088 117 0 3 chr6 14476849 14477148 -167938094 - AluSx SINE Alu -14 298 1 2107 122 3 0 chr6 14478183 14478494 -167936748 - AluSx SINE Alu 0 312 1 696 241 121 0 chr6 14478494 14478660 -167936582 - MIR SINE MIR -62 200 15 1611 141 39 33 chr6 14478802 14479108 -167936134 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr6 14479149 14479172 -167936070 + AT_rich Low_complexity Low_complexity 1 23 0 543 101 0 0 chr6 14479195 14479274 -167935968 + (TCCC)n Simple_repeat Simple_repeat 3 81 0 646 130 123 43 chr6 14479275 14479413 -167935829 - AluJb SINE Alu -21 291 143 1056 163 13 53 chr6 14480200 14480427 -167934815 - AluJo SINE Alu -8 304 87 2141 113 0 6 chr6 14480545 14480856 -167934386 - AluSq SINE Alu -4 309 1 251 222 42 42 chr6 14481022 14481094 -167934148 + MIR3 SINE MIR 111 182 -26 1173 170 24 32 chr6 14481148 14481395 -167933847 - L1MB8 LINE L1 0 6178 5934 2130 104 10 0 chr6 14481429 14481728 -167933514 + AluSx SINE Alu 1 302 -10 2150 93 10 0 chr6 14482095 14482396 -167932846 + AluSq SINE Alu 1 304 -9 4523 147 58 86 chr6 14482476 14483773 -167931469 + pTR5 LTR ERV1 743 2296 -142 1168 190 40 12 chr6 14483784 14484037 -167931205 + AluJb SINE Alu 31 290 -22 1922 128 3 7 chr6 14484476 14484773 -167930469 - AluSg SINE Alu -14 296 1 538 196 30 200 chr6 14484859 14484950 -167930292 + MIR SINE MIR 31 136 -126 2199 129 0 0 chr6 14484950 14485260 -167929982 - AluSx SINE Alu -2 310 1 538 196 30 200 chr6 14485260 14485283 -167929959 + MIR SINE MIR 136 161 -101 829 164 0 50 chr6 14485283 14485423 -167929819 - FLAM_C SINE Alu 0 133 1 538 196 30 200 chr6 14485423 14485542 -167929700 + MIR SINE MIR 161 225 -37 1881 108 7 58 chr6 14485542 14485837 -167929405 + AluSg SINE Alu 1 280 -30 183 42 0 0 chr6 14485841 14485865 -167929377 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1728 167 16 13 chr6 14485875 14486181 -167929061 + AluJb SINE Alu 1 307 -5 1679 159 60 63 chr6 14486269 14486407 -167928835 + MLT1A1 LTR MaLR 1 138 -227 2647 30 0 0 chr6 14486407 14486705 -167928537 + AluY SINE Alu 1 298 -13 1679 159 60 63 chr6 14486705 14486931 -167928311 + MLT1A1 LTR MaLR 138 364 -1 237 296 120 19 chr6 14486933 14487041 -167928201 - MIR3 SINE MIR -87 121 3 2563 86 0 0 chr6 14487252 14487565 -167927677 - AluSq SINE Alu 0 313 1 819 167 0 0 chr6 14487577 14487715 -167927527 - FRAM SINE Alu 0 176 39 1463 94 0 49 chr6 14487738 14487962 -167927280 - AluY SINE Alu -12 299 87 1026 187 128 0 chr6 14487999 14488202 -167927040 + LTR39 LTR ERV1 555 783 0 3640 169 75 58 chr6 14488711 14488798 -167926444 - LTR39 LTR ERV1 0 783 699 1751 113 0 4 chr6 14488798 14489045 -167926197 - AluSx SINE Alu -10 302 57 3640 169 75 58 chr6 14489045 14489518 -167925724 - LTR39 LTR ERV1 -84 699 235 2232 113 7 0 chr6 14489518 14489819 -167925423 - AluSx SINE Alu -9 303 1 3640 169 75 58 chr6 14489819 14489937 -167925305 - LTR39 LTR ERV1 -548 235 120 2316 102 0 0 chr6 14489937 14490242 -167925000 - AluSx SINE Alu -7 305 1 3640 169 75 58 chr6 14490242 14490331 -167924911 - LTR39 LTR ERV1 -663 120 1 1025 132 18 12 chr6 14490395 14490562 -167924680 + HSMAR2 DNA Mariner 1 168 -1134 2400 92 0 7 chr6 14490569 14490872 -167924370 + AluSg SINE Alu 2 302 -8 1085 151 0 6 chr6 14490872 14491044 -167924198 + AluJb SINE Alu 134 304 -8 758 164 0 9 chr6 14491049 14491165 -167924077 + FLAM_C SINE Alu 2 116 -27 1646 108 24 12 chr6 14491194 14491217 -167924025 + HSMAR2 DNA Mariner 1051 1072 -230 1700 175 19 7 chr6 14491217 14491525 -167923717 + AluJb SINE Alu 1 312 0 1646 108 24 12 chr6 14491525 14491750 -167923492 + HSMAR2 DNA Mariner 1072 1302 0 2245 126 0 0 chr6 14491794 14492103 -167923139 - AluJb SINE Alu -3 309 1 2017 101 73 0 chr6 14492111 14492397 -167922845 - AluSx SINE Alu -5 307 1 551 264 40 102 chr6 14492796 14493118 -167922124 + MLT1L LTR MaLR 207 508 -107 2133 114 0 10 chr6 14493309 14493606 -167921636 - AluSg SINE Alu -16 294 1 233 29 29 0 chr6 14494004 14494038 -167921204 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2498 74 0 7 chr6 14494410 14494720 -167920522 + AluSx SINE Alu 1 308 -4 2344 93 10 0 chr6 14494732 14495034 -167920208 + AluSq SINE Alu 9 313 0 848 144 0 0 chr6 14495340 14495458 -167919784 - FLAM_C SINE Alu -13 120 3 253 225 28 70 chr6 14495868 14495939 -167919303 + MLT1K LTR MaLR 486 553 -35 2063 135 0 0 chr6 14495957 14496254 -167918988 - AluJb SINE Alu -15 297 1 1761 144 13 39 chr6 14496282 14496594 -167918648 + AluJb SINE Alu 1 304 -8 1890 118 0 67 chr6 14498029 14498343 -167916899 - AluSx SINE Alu -18 294 2 21 0 0 0 chr6 14498691 14498712 -167916530 + AT_rich Low_complexity Low_complexity 1 21 0 2255 92 3 0 chr6 14499282 14499575 -167915667 + AluSg SINE Alu 1 294 -16 2190 83 38 3 chr6 14500626 14500914 -167914328 - AluSx SINE Alu -14 298 1 1004 171 46 37 chr6 14501193 14501409 -167913833 - AluJo SINE Alu -8 304 87 693 209 40 40 chr6 14501790 14501967 -167913275 - MER104 DNA MER2_type -3 177 1 347 238 30 50 chr6 14502266 14502367 -167912875 + MIR SINE MIR 43 141 -67 847 128 149 0 chr6 14503167 14503315 -167911927 + AluSg/x SINE Alu 138 307 -2 2871 151 61 8 chr6 14503417 14503941 -167911301 + L1MB3 LINE L1 5631 6182 -1 811 181 0 0 chr6 14504275 14504408 -167910834 - FLAM_C SINE Alu -4 139 7 819 130 0 22 chr6 14504800 14504938 -167910304 - AluSc SINE Alu -2 307 173 264 154 0 0 chr6 14505285 14505337 -167909905 + A-rich Low_complexity Low_complexity 1 52 0 1555 92 23 5 chr6 14505836 14506054 -167909188 + L1PB1 LINE L1 5928 6149 -2 2351 104 7 0 chr6 14506439 14506746 -167908496 - AluSx SINE Alu -2 310 2 21 0 0 0 chr6 14506917 14506938 -167908304 + AT_rich Low_complexity Low_complexity 1 21 0 2518 62 0 0 chr6 14507588 14507893 -167907349 + AluY SINE Alu 1 305 -6 2117 135 3 0 chr6 14507903 14508214 -167907028 + AluSx SINE Alu 1 312 0 2249 92 0 13 chr6 14508258 14508561 -167906681 - AluSq SINE Alu -14 299 1 29 47 0 0 chr6 14508587 14508630 -167906612 + AT_rich Low_complexity Low_complexity 1 43 0 2137 122 3 0 chr6 14509349 14509644 -167905598 - AluSg SINE Alu -14 296 1 2415 91 10 0 chr6 14509984 14510292 -167904950 - AluSq SINE Alu -2 311 1 229 230 13 27 chr6 14511012 14511113 -167904129 + L1ME3 LINE L1 5666 5765 -397 592 270 94 4 chr6 14511171 14511404 -167903838 + L1ME3 LINE L1 5902 6155 -7 1879 151 0 31 chr6 14511729 14512048 -167903194 + AluJb SINE Alu 1 309 -3 328 291 10 10 chr6 14512747 14512850 -167902392 + L1ME4a LINE L1 5808 5910 -211 2337 85 3 0 chr6 14513227 14513522 -167901720 - AluSp SINE Alu -17 296 1 777 143 27 0 chr6 14514013 14514125 -167901117 + AluJb SINE Alu 2 116 -196 36 23 0 0 chr6 14514126 14514169 -167901073 + AT_rich Low_complexity Low_complexity 1 43 0 2226 128 0 6 chr6 14514202 14514514 -167900728 + AluSx SINE Alu 3 312 0 2500 50 0 50 chr6 14514654 14514976 -167900266 + AluY SINE Alu 1 306 -5 955 118 0 15 chr6 14515318 14515453 -167899789 - FLAM_C SINE Alu 0 133 1 210 307 72 36 chr6 14515604 14515770 -167899472 - MIR SINE MIR -56 206 35 2427 84 7 0 chr6 14516135 14516443 -167898799 + AluSg SINE Alu 1 310 0 1036 160 12 0 chr6 14516789 14516958 -167898284 + AluJb SINE Alu 120 290 -22 4167 159 64 93 chr6 14517307 14518114 -167897128 - L1MB8 LINE L1 -1 6177 5347 1726 183 101 25 chr6 14518114 14518481 -167896761 + MSTD LTR MaLR 2 396 0 4167 159 64 93 chr6 14518481 14519089 -167896153 - L1MB8 LINE L1 -831 5347 4730 593 154 0 39 chr6 14519089 14519193 -167896049 - FRAM SINE Alu -3 173 74 4167 159 64 93 chr6 14519193 14519424 -167895818 - L1MB8 LINE L1 -1448 4730 4494 557 187 0 0 chr6 14519466 14519573 -167895669 - L1MB8 LINE L1 -2367 3779 3673 1824 158 0 33 chr6 14519773 14520076 -167895166 + AluJo SINE Alu 1 293 -19 2281 96 0 0 chr6 14520084 14520375 -167894867 + AluSg SINE Alu 1 291 -19 231 337 116 0 chr6 14521399 14521494 -167893748 + L2 LINE L2 3137 3242 -30 348 269 54 130 chr6 14523078 14523098 -167892144 + L2 LINE L2 2995 3015 -298 1709 173 58 6 chr6 14523098 14523427 -167891815 + MER7A DNA MER2_type 2 345 -1 348 269 54 130 chr6 14523427 14523722 -167891520 + L2 LINE L2 3015 3286 -27 304 295 123 57 chr6 14524224 14524573 -167890669 - L1M2 LINE L1 -5599 1250 879 30 69 0 0 chr6 14524719 14524777 -167890465 + GC_rich Low_complexity Low_complexity 1 58 0 680 63 0 0 chr6 14525565 14525644 -167889598 - MADE1 DNA Mariner -1 79 1 277 215 31 0 chr6 14525791 14525856 -167889386 - MER116 DNA Mariner -1 79 13 2713 199 73 50 chr6 14525974 14526178 -167889064 - L1ME2 LINE L1 0 6164 5966 2365 87 0 0 chr6 14526178 14526476 -167888766 - AluSg SINE Alu -12 298 1 2713 199 73 50 chr6 14526476 14527056 -167888186 - L1ME2 LINE L1 -198 5966 5362 308 254 0 0 chr6 14527065 14527128 -167888114 + MIR SINE MIR 194 256 -6 496 290 122 42 chr6 14527168 14527334 -167887908 + MLT1K LTR MaLR 5 156 -432 2158 92 35 0 chr6 14527334 14527617 -167887625 + AluSp SINE Alu 1 293 -20 496 290 122 42 chr6 14527617 14527632 -167887610 + MLT1K LTR MaLR 156 168 -420 2216 121 0 3 chr6 14527632 14527937 -167887305 - AluSx SINE Alu -8 304 1 496 290 122 42 chr6 14527937 14528198 -167887044 + MLT1K LTR MaLR 168 555 -33 318 305 28 22 chr6 14528822 14528963 -167886279 + L1MDa LINE L1 21 593 -5937 1621 246 38 12 chr6 14529035 14529535 -167885707 + L1MDa LINE L1 1868 2380 -4160 1374 172 0 52 chr6 14529535 14529785 -167885457 + AluJo SINE Alu 1 237 -75 581 195 29 17 chr6 14529790 14529964 -167885278 + L1MDa LINE L1 2385 2560 -3980 356 250 35 5 chr6 14529964 14530107 -167885135 - MER58C DNA MER1_type 0 215 1 469 207 7 64 chr6 14530107 14530247 -167884995 + L1MDa LINE L1 2593 2724 -3997 420 65 97 0 chr6 14530806 14530930 -167884312 + (TA)n Simple_repeat Simple_repeat 1 136 0 730 192 0 8 chr6 14530930 14531055 -167884187 - FLAM_C SINE Alu -19 124 1 848 247 44 68 chr6 14531153 14531495 -167883747 - L1MC4 LINE L1 -323 7672 7331 1911 199 22 10 chr6 14531620 14532032 -167883210 - Zaphod DNA AcHobo -8 4023 3607 2418 89 0 10 chr6 14532037 14532351 -167882891 - AluY SINE Alu 0 311 1 1942 107 43 11 chr6 14532394 14532675 -167882567 + AluSc SINE Alu 1 290 -19 2535 225 99 46 chr6 14532699 14532818 -167882424 - Zaphod DNA AcHobo -3074 957 846 1435 173 79 22 chr6 14532818 14533095 -167882147 - AluJo SINE Alu -19 293 1 2535 225 99 46 chr6 14533095 14533125 -167882117 - Zaphod DNA AcHobo -3185 846 819 2113 115 10 7 chr6 14533125 14533430 -167881812 + AluSq SINE Alu 3 308 -5 2535 225 99 46 chr6 14533430 14534171 -167881071 - Zaphod DNA AcHobo -3212 819 19 2395 92 0 3 chr6 14534699 14535003 -167880239 - AluSg SINE Alu -7 303 1 202 185 56 56 chr6 14535302 14535356 -167879886 - L2 LINE L2 -665 2649 2596 424 196 164 32 chr6 14535603 14535792 -167879450 + L1ME4a LINE L1 5874 6087 -34 1030 175 52 65 chr6 14535964 14536137 -167879105 + MER33 DNA MER1_type 38 207 -2378 2086 178 89 0 chr6 14536137 14536497 -167878745 - MSTD LTR MaLR -2 394 3 1030 175 52 65 chr6 14536497 14536614 -167878628 + MER33 DNA MER1_type 207 324 0 806 122 9 0 chr6 14536893 14537008 -167878234 - AluSg/x SINE Alu -19 290 175 2145 111 7 3 chr6 14536896 14537185 -167878057 - AluSx SINE Alu -22 290 1 215 190 68 181 chr6 14537802 14537938 -167877304 + MIR SINE MIR 65 169 -93 2264 102 0 0 chr6 14537938 14538248 -167876994 + AluY SINE Alu 1 310 0 215 190 68 181 chr6 14538248 14538331 -167876911 + MIR SINE MIR 169 260 -2 749 254 84 50 chr6 14538399 14538817 -167876425 - MLT1L LTR MaLR -8 607 109 6620 58 134 64 chr6 14538968 14540060 -167875182 - MER11A LTR ERVK 0 1266 2 419 362 74 29 chr6 14540319 14541170 -167874072 - L2 LINE L2 -179 3093 2202 356 141 0 14 chr6 14541239 14541310 -167873932 + (TCCCC)n Simple_repeat Simple_repeat 3 72 0 2064 130 10 0 chr6 14541310 14541617 -167873625 - AluSq SINE Alu -3 310 1 1198 236 217 12 chr6 14541786 14542201 -167873041 + MLT1F LTR MaLR 1 500 -42 2223 94 24 0 chr6 14542455 14542743 -167872499 - AluSp SINE Alu -18 295 1 21 82 0 0 chr6 14542834 14542883 -167872359 + AT_rich Low_complexity Low_complexity 1 49 0 208 250 0 0 chr6 14543247 14543299 -167871943 - MER91B DNA MER1_type -60 130 79 219 324 0 0 chr6 14543366 14543437 -167871805 + MER91B DNA MER1_type 70 140 0 3595 55 4 0 chr6 14544276 14544728 -167870514 + L1PA8 LINE L1 5719 6172 0 2946 49 3 0 chr6 14545398 14545806 -167869436 + L1PA8 LINE L1 5805 6213 0 472 295 58 12 chr6 14546321 14546494 -167868748 + MLT1J2 LTR MaLR 270 450 0 400 218 69 10 chr6 14546495 14546596 -167868646 + MER91C DNA MER1_type 33 139 -1 356 272 152 58 chr6 14546602 14546793 -167868449 + LTR67 LTR ERVL 86 294 -263 353 238 50 10 chr6 14546869 14546970 -167868272 + LTR67 LTR ERVL 401 505 -52 700 218 51 13 chr6 14547166 14547321 -167867921 - MLT1J LTR MaLR -246 265 105 547 86 0 25 chr6 14547321 14547402 -167867840 + MER65A LTR ERV1 1 79 -366 1280 126 5 0 chr6 14547402 14547592 -167867650 + AluSg/x SINE Alu 120 310 0 1967 122 31 88 chr6 14547592 14547799 -167867443 + MER65A LTR ERV1 82 299 -146 2410 77 0 32 chr6 14547799 14548111 -167867131 - AluY SINE Alu -9 302 1 1967 122 31 88 chr6 14548111 14548142 -167867100 + MER65A LTR ERV1 299 330 -115 2056 125 7 0 chr6 14548142 14548430 -167866812 + AluSx SINE Alu 1 290 -22 1967 122 31 88 chr6 14548430 14548575 -167866667 + MER65A LTR ERV1 330 444 -1 227 311 23 45 chr6 14548614 14548746 -167866496 - L2 LINE L2 -323 2949 2821 311 272 92 82 chr6 14548862 14549068 -167866174 - LTR67 LTR ERVL -21 536 329 337 246 113 49 chr6 14549155 14549297 -167865945 - LTR67 LTR ERVL -267 290 140 264 242 0 45 chr6 14549328 14549394 -167865848 - LTR67 LTR ERVL -492 65 3 375 277 57 21 chr6 14549632 14549773 -167865469 - MIR SINE MIR -116 146 1 1848 169 0 7 chr6 14550348 14550650 -167864592 - AluJb SINE Alu -12 300 1 339 25 0 0 chr6 14550841 14550881 -167864361 + (CA)n Simple_repeat Simple_repeat 2 41 0 2564 51 0 0 chr6 14551171 14551467 -167863775 - AluY SINE Alu -15 296 1 2958 189 20 16 chr6 14552210 14552770 -167862472 + MER68 LTR ERV1 1 562 0 281 229 86 0 chr6 14552844 14552914 -167862328 + L2 LINE L2 3192 3267 -46 1892 173 33 92 chr6 14553207 14553323 -167861919 + MLT1C LTR MaLR 6 127 -340 2100 106 3 14 chr6 14553323 14553616 -167861626 + AluSx SINE Alu 6 295 -17 1892 173 33 92 chr6 14553616 14553722 -167861520 + MLT1C LTR MaLR 127 238 -229 1857 187 152 0 chr6 14553722 14554144 -167861098 + MER66B LTR ERV1 1 486 0 1892 173 33 92 chr6 14554144 14554411 -167860831 + MLT1C LTR MaLR 238 467 0 204 40 0 0 chr6 14554704 14554729 -167860513 + (T)n Simple_repeat Simple_repeat 1 25 0 2516 63 0 13 chr6 14554919 14555234 -167860008 + AluY SINE Alu 1 311 0 1441 69 0 21 chr6 14555525 14555714 -167859528 - AluSq SINE Alu -1 312 128 607 226 0 16 chr6 14555891 14556015 -167859227 - FLAM_A SINE Alu -11 122 1 2041 138 0 13 chr6 14556027 14556332 -167858910 - AluSx SINE Alu -10 302 2 2048 75 21 108 chr6 14556343 14556677 -167858565 - AluYb8 SINE Alu -13 305 1 1541 155 4 30 chr6 14556704 14556975 -167858267 + AluJb SINE Alu 36 299 -13 1062 190 86 23 chr6 14556984 14557409 -167857833 - MER74A LTR ERVL -2 556 50 407 178 78 93 chr6 14557409 14557584 -167857658 + LTR8 LTR ERV1 1 145 -396 928 230 108 65 chr6 14557690 14558171 -167857071 + LTR8A LTR ERV1 116 727 0 1378 170 78 40 chr6 14558229 14558652 -167856590 - L1MC5 LINE L1 -36 7925 7487 2922 162 31 23 chr6 14559047 14559538 -167855704 - MER89 LTR ERV1 0 559 73 2496 87 0 3 chr6 14559538 14559849 -167855393 - AluSq SINE Alu -3 310 1 255 31 0 0 chr6 14559851 14559883 -167855359 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2132 107 0 0 chr6 14559883 14560163 -167855079 - AluSx SINE Alu -30 282 3 2922 162 31 23 chr6 14560163 14560222 -167855020 - MER89 LTR ERV1 -485 74 1 1435 148 169 57 chr6 14560583 14560726 -167854516 + MSTA LTR MaLR 1 127 -301 2108 117 4 0 chr6 14560726 14561036 -167854206 - AluSx SINE Alu 0 311 1 1435 148 169 57 chr6 14561036 14561276 -167853966 + MSTA LTR MaLR 127 428 0 1696 235 76 12 chr6 14561310 14561812 -167853430 + MER74B LTR ERVL 85 618 -4 1446 137 144 4 chr6 14561830 14562099 -167853143 + MLT1A1 LTR MaLR 2 341 -55 354 174 41 10 chr6 14562117 14562215 -167853027 + CT-rich Low_complexity Low_complexity 4 104 0 1799 185 3 3 chr6 14562240 14562543 -167852699 - AluJo SINE Alu -7 305 3 428 136 0 86 chr6 14562544 14562625 -167852617 + MLT1A1 LTR MaLR 292 365 0 261 222 58 159 chr6 14562775 14562982 -167852260 - HERVL LTR ERVL -4275 1379 1194 1441 183 84 7 chr6 14563257 14563531 -167851711 - AluJo SINE Alu -17 295 1 321 210 190 0 chr6 14563821 14563921 -167851321 - Charlie7 DNA MER1_type -2044 568 450 5477 162 34 27 chr6 14563926 14565439 -167849803 - pTR5 LTR ERV1 0 2438 743 2201 152 26 5 chr6 14565480 14565862 -167849380 - MLT1B LTR MaLR 0 390 1 601 292 55 18 chr6 14565918 14566192 -167849050 - Charlie7 DNA MER1_type -2238 374 91 569 175 60 96 chr6 14566874 14566965 -167848277 - MER5A DNA MER1_type -29 160 76 2206 115 3 0 chr6 14566965 14567260 -167847982 - AluSg SINE Alu -14 296 1 569 175 60 96 chr6 14567260 14567334 -167847908 - MER5A DNA MER1_type -113 76 1 2172 118 0 10 chr6 14567371 14567677 -167847565 - AluSx SINE Alu -9 303 1 218 232 36 0 chr6 14569300 14569356 -167845886 - L2 LINE L2 -1531 1783 1726 24 32 0 0 chr6 14569379 14569410 -167845832 + AT_rich Low_complexity Low_complexity 1 31 0 4839 173 64 61 chr6 14569971 14571663 -167843579 + pTR5 LTR ERV1 741 2438 0 1262 213 39 18 chr6 14571723 14572005 -167843237 + AluJo SINE Alu 5 292 -20 369 264 163 20 chr6 14572025 14572271 -167842971 - L1M4 LINE L1 -1077 5069 4789 2026 130 7 20 chr6 14573079 14573380 -167841862 - AluSx SINE Alu -15 297 1 2618 205 22 16 chr6 14573786 14574341 -167840901 - MER74A LTR ERVL 0 558 1 2829 69 0 0 chr6 14574844 14575205 -167840037 - L1PA8 LINE L1 -7 6165 5805 726 270 93 9 chr6 14576859 14577085 -167838157 + MIR SINE MIR 18 262 0 338 304 88 23 chr6 14577162 14577333 -167837909 + MIR3 SINE MIR 20 201 -7 194 0 39 0 chr6 14577438 14577464 -167837778 + (CA)n Simple_repeat Simple_repeat 2 28 0 275 0 29 0 chr6 14577604 14577639 -167837603 + (CA)n Simple_repeat Simple_repeat 2 37 0 2190 120 0 3 chr6 14577711 14578011 -167837231 - AluSx SINE Alu -13 299 1 338 295 127 52 chr6 14578119 14578488 -167836754 - LTR16C LTR ERVL -5 486 90 857 165 44 118 chr6 14579124 14579271 -167835971 - L1MA9 LINE L1 -37 6275 6156 198 0 0 0 chr6 14579271 14579293 -167835949 + (TG)n Simple_repeat Simple_repeat 1 22 0 857 165 44 118 chr6 14579293 14579417 -167835825 - L1MA9 LINE L1 -156 6156 6024 21 0 0 0 chr6 14579683 14579704 -167835538 + AT_rich Low_complexity Low_complexity 1 21 0 3555 156 23 58 chr6 14579730 14580456 -167834786 - L1MB3 LINE L1 -33 6150 5450 6933 123 123 117 chr6 14580961 14582648 -167832594 - pTR5 LTR ERV1 0 2438 742 1826 177 44 36 chr6 14583076 14583461 -167831781 + MLT1B LTR MaLR 3 390 0 204 40 0 0 chr6 14583522 14583547 -167831695 + (TG)n Simple_repeat Simple_repeat 1 25 0 404 228 94 34 chr6 14584649 14584798 -167830444 + L1M4 LINE L1 2371 2528 -3618 2268 156 22 34 chr6 14584821 14584922 -167830320 - MSTB LTR MaLR 0 426 325 1547 113 41 0 chr6 14584922 14585143 -167830099 - MER30 DNA MER1_type 0 230 1 2268 156 22 34 chr6 14585143 14585451 -167829791 - MSTB LTR MaLR -101 325 22 2022 130 0 17 chr6 14585459 14585760 -167829482 + AluSg SINE Alu 1 296 -14 599 285 92 14 chr6 14585800 14586225 -167829017 + L1M4 LINE L1 2558 3015 -3131 261 213 117 0 chr6 14586245 14586339 -167828903 + L1M4 LINE L1 3118 3222 -2924 487 276 58 12 chr6 14586434 14586688 -167828554 + L1MDa LINE L1 1776 2080 -4538 1703 141 35 0 chr6 14586702 14586958 -167828284 + AluSx SINE Alu 36 300 -12 2228 126 34 28 chr6 14586961 14587037 -167828205 - MER7C DNA MER2_type -2659 369 295 2699 153 36 2 chr6 14587037 14587449 -167827793 - MSTB LTR MaLR 0 426 1 2228 126 34 28 chr6 14587449 14587730 -167827512 - MER7C DNA MER2_type -2733 295 10 264 223 152 0 chr6 14587945 14588057 -167827185 + L1MDa LINE L1 2526 2654 -3888 303 215 0 35 chr6 14588362 14588447 -167826795 + L1MDa LINE L1 1573 1737 -4645 3501 111 46 4 chr6 14588496 14589000 -167826242 + LTR17 LTR ERV1 256 780 0 14419 75 24 30 chr6 14589024 14590709 -167824533 + HERV17 LTR ERV1 22 1693 -6933 2406 77 3 0 chr6 14590709 14591009 -167824233 + AluY SINE Alu 1 301 -10 14419 75 24 30 chr6 14591009 14591322 -167823920 + HERV17 LTR ERV1 1693 2007 -6619 10946 54 5 8 chr6 14591314 14593244 -167821998 + HERV17 LTR ERV1 2430 6019 -2607 * 304 51 0 0 chr6 14593237 14593276 -167821966 + HERV17 LTR ERV1 7510 7548 -1078 * 2356 52 3 3 chr6 14593266 14593553 -167821689 + HERV17 LTR ERV1 8335 8621 -5 2427 104 0 6 chr6 14593557 14593885 -167821357 + LTR17 LTR ERV1 1 326 -454 204 149 0 21 chr6 14593887 14593934 -167821308 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 309 205 8 148 chr6 14593981 14594103 -167821139 + L2 LINE L2 3117 3221 -92 209 238 12 0 chr6 14594660 14594740 -167820502 + (TG)n Simple_repeat Simple_repeat 1 81 0 2034 124 28 0 chr6 14595380 14595663 -167819579 - AluSx SINE Alu -21 291 1 22 56 0 0 chr6 14596118 14596154 -167819088 + AT_rich Low_complexity Low_complexity 1 36 0 990 194 25 138 chr6 14596156 14596481 -167818761 - AluYb8 SINE Alu -30 288 1 260 255 142 28 chr6 14596523 14596629 -167818613 + MER5B DNA MER1_type 1 118 -60 686 257 160 51 chr6 14596804 14596936 -167818306 + L2 LINE L2 2926 3042 -271 1922 111 56 0 chr6 14596936 14597206 -167818036 - AluSx SINE Alu -9 303 19 686 257 160 51 chr6 14597206 14597423 -167817819 + L2 LINE L2 3042 3313 0 285 289 67 0 chr6 14597440 14597544 -167817698 - MIR SINE MIR -55 207 97 1598 142 104 21 chr6 14597545 14597833 -167817409 + AluJo SINE Alu 1 312 0 186 43 0 0 chr6 14597837 14597860 -167817382 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 268 233 63 74 chr6 14597861 14597972 -167817270 - MIR SINE MIR -93 115 19 189 345 18 0 chr6 14598031 14598086 -167817156 - L2 LINE L2 -94 3178 3123 322 312 183 46 chr6 14598146 14598565 -167816677 + L2 LINE L2 2393 2753 -519 2091 119 3 3 chr6 14598565 14598860 -167816382 - AluSx SINE Alu -17 295 1 322 312 183 46 chr6 14598860 14599212 -167816030 + L2 LINE L2 2753 3261 -11 1100 182 10 0 chr6 14599321 14599519 -167815723 - MLT1B LTR MaLR 0 390 191 1586 121 71 36 chr6 14599526 14599807 -167815435 + THE1B LTR MaLR 1 291 -73 269 297 0 0 chr6 14599824 14599915 -167815327 + L1MC4 LINE L1 6613 6703 -1339 2257 93 14 0 chr6 14599921 14600211 -167815031 - AluSx SINE Alu -18 294 1 600 133 0 11 chr6 14600211 14600301 -167814941 + THE1B LTR MaLR 276 364 0 915 96 86 91 chr6 14600326 14600513 -167814729 - MLT1B LTR MaLR -204 186 1 431 246 80 85 chr6 14600513 14600737 -167814505 + LTR16A LTR ERVL 216 438 -12 1542 216 30 24 chr6 14601926 14602264 -167812978 - MER58B DNA MER1_type -1 340 1 38 0 0 0 chr6 14602723 14602761 -167812481 + AT_rich Low_complexity Low_complexity 1 38 0 311 241 49 0 chr6 14603009 14603233 -167812009 + (TA)n Simple_repeat Simple_repeat 1 235 0 2131 128 0 3 chr6 14603275 14603580 -167811662 - AluSx SINE Alu -8 304 1 515 258 52 0 chr6 14603654 14603809 -167811433 - L1ME3A LINE L1 -281 5889 5727 1630 172 29 16 chr6 14603929 14604237 -167811005 + MLT1B LTR MaLR 79 390 0 591 286 80 10 chr6 14604386 14604697 -167810545 - L1ME3A LINE L1 -1419 4727 4395 218 254 76 34 chr6 14604881 14604999 -167810243 - L2 LINE L2 -973 2341 2219 1671 157 66 11 chr6 14605130 14605404 -167809838 + AluJb SINE Alu 1 289 -23 1530 161 57 143 chr6 14605427 14605488 -167809754 - MLT1C LTR MaLR 0 467 402 1854 147 25 0 chr6 14605488 14605767 -167809475 + AluSx SINE Alu 1 286 -26 1530 161 57 143 chr6 14605767 14606165 -167809077 - MLT1C LTR MaLR -65 402 48 24 53 0 0 chr6 14606523 14606561 -167808681 + AT_rich Low_complexity Low_complexity 1 38 0 1605 98 13 17 chr6 14606561 14606767 -167808475 - L1MA5A LINE L1 -5 6292 6086 2731 88 59 0 chr6 14606767 14607121 -167808121 - THE1C LTR MaLR 0 375 1 1605 98 13 17 chr6 14607121 14607150 -167808092 - L1MA5A LINE L1 -211 6086 6058 320 319 38 11 chr6 14607165 14607350 -167807892 - L3 LINE CR1 -199 1378 1189 771 293 19 0 chr6 14607364 14607569 -167807673 - MIR SINE MIR -2 260 52 273 154 103 39 chr6 14607766 14607844 -167807398 - MLT1L LTR MaLR -4 611 529 754 286 50 36 chr6 14608465 14608881 -167806361 + L1ME4a LINE L1 5691 6112 -9 2306 101 0 0 chr6 14609502 14609808 -167805434 - AluSx SINE Alu -6 306 1 873 148 7 14 chr6 14610136 14610278 -167804964 + FLAM_C SINE Alu 1 141 -2 2067 115 26 26 chr6 14610377 14610689 -167804553 - AluSx SINE Alu 0 312 1 663 258 38 113 chr6 14610811 14611102 -167804140 - MLT1L LTR MaLR -7 608 236 2693 42 0 0 chr6 14611120 14611430 -167803812 - AluY SINE Alu -1 310 1 231 114 0 0 chr6 14612230 14612265 -167802977 + (GAA)n Simple_repeat Simple_repeat 1 35 0 2517 54 0 3 chr6 14612344 14612640 -167802602 + AluY SINE Alu 1 295 -16 1841 161 13 3 chr6 14612655 14612960 -167802282 + AluJb SINE Alu 5 312 0 240 35 0 0 chr6 14613504 14613533 -167801709 + (TG)n Simple_repeat Simple_repeat 2 30 0 353 169 14 14 chr6 14613791 14613862 -167801380 + MLT1J2 LTR MaLR 74 144 -306 370 217 22 22 chr6 14613983 14614075 -167801167 + MLT1I LTR MaLR 309 400 -9 395 287 16 39 chr6 14614462 14614591 -167800651 + MIR3 SINE MIR 15 140 -68 187 299 39 52 chr6 14614604 14614647 -167800595 + MIR3 SINE MIR 6 49 -159 1195 162 133 41 chr6 14614647 14614918 -167800324 - AluJb SINE Alu -6 296 1 187 299 39 52 chr6 14614918 14614951 -167800291 + MIR3 SINE MIR 49 81 -127 266 302 88 39 chr6 14615726 14615908 -167799334 - L1MC4a LINE L1 -1853 5955 5765 300 333 217 19 chr6 14615957 14616266 -167798976 - L1MC4a LINE L1 -1895 5913 5544 40 49 0 0 chr6 14616291 14616352 -167798890 + AT_rich Low_complexity Low_complexity 1 61 0 2259 104 3 0 chr6 14616423 14616721 -167798521 + AluSx SINE Alu 1 299 -13 478 267 116 54 chr6 14616724 14617065 -167798177 - L1MC4a LINE L1 -83 6038 5674 253 284 49 0 chr6 14617687 14617768 -167797474 - L2 LINE L2 -4 3309 3225 833 122 0 7 chr6 14618035 14618183 -167797059 + (TTCC)n Simple_repeat Simple_repeat 4 150 0 343 346 86 0 chr6 14619762 14619924 -167795318 - MIR SINE MIR -11 251 76 2282 81 17 3 chr6 14620309 14620604 -167794638 + L1PA10 LINE L1 5868 6166 -2 4399 149 55 17 chr6 14620734 14621547 -167793695 + L1MB8 LINE L1 5337 6178 0 745 260 44 52 chr6 14621570 14621820 -167793422 - MIR SINE MIR -13 249 2 209 209 66 77 chr6 14621803 14621894 -167793348 - MIR3 SINE MIR -1 207 118 * 2295 103 3 0 chr6 14622500 14622802 -167792440 - AluSx SINE Alu -9 303 1 198 0 0 0 chr6 14623643 14623665 -167791577 + (ATG)n Simple_repeat Simple_repeat 2 23 0 270 0 0 0 chr6 14623859 14623889 -167791353 + (T)n Simple_repeat Simple_repeat 1 30 0 943 269 124 38 chr6 14623905 14624358 -167790884 + MLT1L LTR MaLR 122 613 -2 228 357 0 18 chr6 14625249 14625361 -167789881 - L2 LINE L2 -217 3055 2946 199 329 71 41 chr6 14626390 14626560 -167788682 + L2 LINE L2 2804 2978 -294 815 295 60 48 chr6 14627158 14627571 -167787671 - L2 LINE L2 -9 3304 2887 206 132 0 26 chr6 14627613 14627637 -167787605 + (TC)n Simple_repeat Simple_repeat 2 26 -12 2027 106 0 0 chr6 14627637 14627901 -167787341 - AluSq SINE Alu -9 304 41 206 132 0 26 chr6 14627901 14627914 -167787328 + (TC)n Simple_repeat Simple_repeat 26 38 0 487 335 36 33 chr6 14628084 14628359 -167786883 + L2 LINE L2 2440 2715 -599 627 119 0 28 chr6 14628753 14628862 -167786380 + MER53 DNA DNA 1 106 -83 183 167 0 0 chr6 14629376 14629406 -167785836 - MIR SINE MIR -56 152 123 224 200 0 0 chr6 14631162 14631197 -167784045 + MIR SINE MIR 64 98 -110 23 54 0 0 chr6 14631404 14631441 -167783801 + AT_rich Low_complexity Low_complexity 1 37 0 2491 74 0 0 chr6 14631687 14631983 -167783259 + AluY SINE Alu 1 296 -15 688 273 43 0 chr6 14632056 14632217 -167783025 - MIR SINE MIR -72 190 23 1086 163 153 28 chr6 14632427 14632715 -167782527 - MER33 DNA MER1_type 0 324 1 806 275 81 6 chr6 14633395 14633741 -167781501 - L1MC4a LINE L1 -1862 5946 5575 189 107 0 0 chr6 14634553 14634581 -167780661 + (GGA)n Simple_repeat Simple_repeat 2 29 0 201 174 0 22 chr6 14634735 14634781 -167780461 + (TGG)n Simple_repeat Simple_repeat 3 47 0 21 0 0 0 chr6 14634996 14635017 -167780225 + GC_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr6 14635133 14635182 -167780060 + GC_rich Low_complexity Low_complexity 1 49 0 21 71 0 0 chr6 14635194 14635236 -167780006 + GC_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 14635339 14635360 -167779882 + GC_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 14635447 14635478 -167779764 + GC_rich Low_complexity Low_complexity 1 31 0 192 40 0 0 chr6 14637054 14637079 -167778163 + (TG)n Simple_repeat Simple_repeat 2 26 0 648 177 31 8 chr6 14639851 14639981 -167775261 - MIR SINE MIR -10 252 120 1208 144 5 5 chr6 14640447 14640648 -167774594 - MER2 DNA MER2_type -143 202 2 288 344 0 0 chr6 14641009 14641102 -167774140 - MIR SINE MIR -2 260 168 743 243 22 33 chr6 14641968 14642066 -167773176 + MIR SINE MIR 35 132 -130 2236 164 0 3 chr6 14642066 14642432 -167772810 + MLT1A1 LTR MaLR 1 365 0 743 243 22 33 chr6 14642432 14642514 -167772728 + MIR SINE MIR 132 213 -49 731 198 5 5 chr6 14643523 14643538 -167771704 - Charlie5 DNA MER1_type -75 2549 2535 1417 156 93 42 chr6 14643538 14643827 -167771415 + AluJo SINE Alu 1 304 -8 731 198 5 5 chr6 14643827 14644013 -167771229 - Charlie5 DNA MER1_type -88 2536 2348 * 2204 128 0 6 chr6 14644022 14644335 -167770907 + AluSx SINE Alu 1 311 -1 881 211 5 0 chr6 14644335 14644518 -167770724 - Charlie5 DNA MER1_type -2437 187 1 224 391 0 0 chr6 14644930 14645017 -167770225 + L2 LINE L2 1227 1313 -2001 682 277 84 64 chr6 14645114 14645498 -167769744 - L2 LINE L2 -280 3033 2594 272 282 0 0 chr6 14645522 14645600 -167769642 + L2 LINE L2 3158 3235 -78 2393 118 83 8 chr6 14646142 14646540 -167768702 - MSTA LTR MaLR 0 428 1 270 309 64 77 chr6 14646858 14647372 -167767870 - L2 LINE L2 -47 3225 2665 3414 245 67 38 chr6 14647450 14648291 -167766951 - L1ME3A LINE L1 -6 6233 5418 2072 74 32 58 chr6 14648291 14648603 -167766639 - AluY SINE Alu -7 304 1 3414 245 67 38 chr6 14648603 14649112 -167766130 - L1ME3A LINE L1 -821 5418 4925 2116 105 0 0 chr6 14649112 14649389 -167765853 + AluSq SINE Alu 26 302 -11 3414 245 67 38 chr6 14649389 14649818 -167765424 - L1ME3A LINE L1 -1314 4925 4510 2427 87 0 0 chr6 14649818 14650127 -167765115 - AluY SINE Alu 0 311 3 3414 245 67 38 chr6 14650127 14650727 -167764515 - L1ME3A LINE L1 -1729 4510 3771 1517 272 91 19 chr6 14650743 14652033 -167763209 - L1MEc LINE L1 -2839 3376 2032 724 281 107 35 chr6 14652195 14652638 -167762604 - L1MEc LINE L1 -4583 1813 1305 1816 186 0 0 chr6 14652638 14652928 -167762314 - AluSx SINE Alu -22 290 1 724 281 107 35 chr6 14652928 14653147 -167762095 - L1MEc LINE L1 -5091 1305 1103 400 191 11 11 chr6 14653183 14653277 -167761965 - L1MB8 LINE L1 -10 6168 6075 22 35 0 0 chr6 14653467 14653496 -167761746 + AT_rich Low_complexity Low_complexity 1 29 0 844 181 0 0 chr6 14653569 14653707 -167761535 - FLAM_C SINE Alu -5 138 1 328 399 69 17 chr6 14653817 14653990 -167761252 + L2 LINE L2 3089 3270 -2 259 229 36 0 chr6 14654004 14654090 -167761152 - MER31B LTR ERV1 -16 527 385 292 225 0 34 chr6 14654183 14654272 -167760970 - MER67B LTR ERV1 -307 403 318 1404 203 90 35 chr6 14654272 14654744 -167760498 - MER67B LTR ERV1 -255 406 5 550 92 0 0 chr6 14654740 14654828 -167760414 - MER31B LTR ERV1 -391 75 1 * 531 331 39 11 chr6 14654959 14655137 -167760105 - MIR SINE MIR -48 214 32 406 297 41 28 chr6 14655401 14655546 -167759696 - MIR3 SINE MIR -1 207 61 2524 170 27 83 chr6 14656099 14656427 -167758815 - MER41C LTR ERV1 0 554 271 2020 138 7 0 chr6 14656427 14656751 -167758491 - AluSx SINE Alu 0 326 1 2524 170 27 83 chr6 14656751 14657008 -167758234 - MER41C LTR ERV1 -283 271 1 12144 123 36 47 chr6 14657009 14659372 -167755870 - MER41C-int LTR ERV1 -1 5945 3609 3421 151 26 16 chr6 14660086 14660785 -167754457 - MER41C-int LTR ERV1 -2301 3645 2955 2072 139 10 0 chr6 14660785 14661080 -167754162 - AluSx SINE Alu -11 301 4 2146 136 0 0 chr6 14661089 14661383 -167753859 - AluSx SINE Alu -18 294 1 3421 151 26 16 chr6 14661383 14661892 -167753350 - MER41C-int LTR ERV1 -2998 2948 2349 * 5093 165 13 32 chr6 14661884 14662933 -167752309 - MER41C-int LTR ERV1 -4820 1126 7 2058 197 13 111 chr6 14662940 14663554 -167751688 - MER41C LTR ERV1 0 554 1 249 308 234 9 chr6 14664097 14664204 -167751038 + L2 LINE L2 3142 3272 0 1654 222 52 46 chr6 14664299 14664726 -167750516 - L1MC5 LINE L1 -36 7925 7491 1083 163 17 54 chr6 14664726 14664965 -167750277 - MER30 DNA MER1_type 0 230 1 1654 222 52 46 chr6 14664965 14665167 -167750075 - L1MC5 LINE L1 -470 7491 7292 585 253 160 10 chr6 14665364 14665558 -167749684 - MER58A DNA MER1_type -1 223 1 399 218 35 105 chr6 14665607 14665836 -167749406 - L1MC5 LINE L1 -823 7138 6926 819 142 0 17 chr6 14666055 14666175 -167749067 + FLAM_C SINE Alu 1 118 -25 1294 116 27 9 chr6 14666287 14666511 -167748731 - L1MA5 LINE L1 -356 5944 5717 2184 131 0 3 chr6 14666599 14666911 -167748331 - AluSx SINE Alu -1 311 1 265 200 0 0 chr6 14667328 14667373 -167747869 + MER41B LTR ERV1 1 45 -590 1972 86 0 0 chr6 14668430 14668693 -167746549 + AluSc SINE Alu 39 301 0 248 361 114 11 chr6 14668843 14669106 -167746136 - L2 LINE L2 -4 3309 3020 1589 164 40 20 chr6 14669109 14669484 -167745758 + MSTB1 LTR MaLR 1 432 0 1651 335 111 21 chr6 14669528 14670473 -167744769 - L2 LINE L2 -373 2941 1912 331 323 42 0 chr6 14670487 14670583 -167744659 + L2 LINE L2 3173 3272 0 839 173 0 0 chr6 14670646 14670779 -167744463 + FLAM_C SINE Alu 1 133 0 342 67 0 0 chr6 14670943 14670988 -167744254 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 255 91 14 chr6 14671645 14671741 -167743501 - MIR SINE MIR -72 190 37 1030 232 109 71 chr6 14673669 14674190 -167741052 - MLT1H LTR MaLR -8 541 1 21 36 0 0 chr6 14674356 14674384 -167740858 + AT_rich Low_complexity Low_complexity 1 28 0 382 270 104 56 chr6 14675566 14675940 -167739302 + HAL1 LINE L1 1141 1532 -975 2169 178 52 11 chr6 14675966 14676409 -167738833 - LOR1b LTR ERV1 0 461 1 1922 156 0 0 chr6 14676767 14677049 -167738193 + AluSx SINE Alu 1 282 -30 288 77 0 0 chr6 14677101 14677140 -167738102 + (TG)n Simple_repeat Simple_repeat 2 40 0 1742 144 0 8 chr6 14677151 14677414 -167737828 - AluJb SINE Alu -40 272 12 1030 298 143 48 chr6 14677425 14678023 -167737219 + L1M4 LINE L1 2226 2765 -3381 592 146 89 57 chr6 14678023 14678146 -167737096 - FLAM_C SINE Alu -6 127 1 1030 298 143 48 chr6 14678146 14678928 -167736314 + L1M4 LINE L1 2765 3738 -2408 235 306 0 0 chr6 14679047 14679109 -167736133 + (TATG)n Simple_repeat Simple_repeat 3 64 0 22 0 0 0 chr6 14679151 14679173 -167736069 + AT_rich Low_complexity Low_complexity 1 22 0 367 261 94 112 chr6 14679243 14679392 -167735850 - MLT1K LTR MaLR 0 588 438 261 0 0 0 chr6 14679392 14679421 -167735821 + (TTG)n Simple_repeat Simple_repeat 2 30 0 367 261 94 112 chr6 14679421 14679869 -167735373 - MLT1K LTR MaLR -150 438 2 2399 152 73 9 chr6 14680313 14680998 -167734244 - L1MA4A LINE L1 -12 6279 5532 227 87 65 43 chr6 14681188 14681234 -167734008 + CT-rich Low_complexity Low_complexity 3 49 0 1900 139 50 36 chr6 14681410 14681769 -167733473 + THE1B LTR MaLR 1 364 0 10995 81 23 62 chr6 14681769 14682305 -167732937 + THE1B-int LTR MaLR 1 556 -1024 2239 92 7 23 chr6 14682305 14682608 -167732634 + AluY SINE Alu 1 298 -13 10995 81 23 62 chr6 14682608 14683715 -167731527 + THE1B-int LTR MaLR 556 1580 0 2028 116 41 41 chr6 14683715 14684077 -167731165 + THE1B LTR MaLR 1 362 -2 407 141 43 11 chr6 14684154 14684246 -167730996 - L1ME3A LINE L1 -216 5954 5860 397 0 38 0 chr6 14690488 14690541 -167724701 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 233 213 0 0 chr6 14691982 14692029 -167723213 - L2 LINE L2 -1046 2268 2222 4534 99 48 24 chr6 14692059 14692805 -167722437 - L1MA5A LINE L1 -4 6293 5530 297 209 67 57 chr6 14693074 14693179 -167722063 - L1MC4 LINE L1 -17 8025 7920 600 271 122 85 chr6 14693338 14693822 -167721420 - L1MC4 LINE L1 -349 7693 7192 2259 117 0 0 chr6 14695320 14695627 -167719615 - AluSc SINE Alu -2 307 1 2397 141 25 30 chr6 14695928 14696362 -167718880 + MSTB1 LTR MaLR 1 432 0 297 278 35 26 chr6 14696685 14696800 -167718442 - MER103 DNA DNA -48 118 3 185 259 52 0 chr6 14697300 14697358 -167717884 - MIR3 SINE MIR -11 197 137 3783 249 112 86 chr6 14698216 14698483 -167716759 - HAL1 LINE L1 0 2507 2249 288 0 0 0 chr6 14698483 14698515 -167716727 + (CA)n Simple_repeat Simple_repeat 2 33 0 3783 249 112 86 chr6 14698515 14699051 -167716191 - HAL1 LINE L1 -258 2249 1729 288 150 0 0 chr6 14699051 14699091 -167716151 + 5S rRNA rRNA 1 40 -81 3783 249 112 86 chr6 14699091 14700473 -167714769 - HAL1 LINE L1 -778 1729 223 2230 110 13 3 chr6 14701537 14701838 -167713404 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 14701994 14702018 -167713224 + AT_rich Low_complexity Low_complexity 1 24 0 3106 147 139 129 chr6 14702300 14702614 -167712628 - L1MC3 LINE L1 0 7785 7475 2225 123 0 0 chr6 14702614 14702914 -167712328 - AluSq SINE Alu -13 300 1 3106 147 139 129 chr6 14702914 14703184 -167712058 - L1MC3 LINE L1 -310 7475 7209 233 250 29 29 chr6 14703184 14703288 -167711954 - MLT1F1 LTR MaLR -450 117 14 3106 147 139 129 chr6 14703288 14703558 -167711684 - L1MC3 LINE L1 -576 7209 6818 1182 207 27 51 chr6 14703582 14703915 -167711327 - L1M4 LINE L1 -780 5366 5042 402 173 0 0 chr6 14703921 14703996 -167711246 + CT-rich Low_complexity Low_complexity 1 75 0 566 276 91 5 chr6 14703996 14704217 -167711025 - L1M4 LINE L1 -1086 5060 4821 2717 222 19 8 chr6 14704281 14704924 -167710318 - L1M4 LINE L1 -2078 4068 3419 362 238 0 0 chr6 14704926 14705010 -167710232 - L1MCb LINE L1 -5101 944 861 25 51 0 0 chr6 14705011 14705050 -167710192 + AT_rich Low_complexity Low_complexity 1 39 0 434 265 59 15 chr6 14705220 14705356 -167709886 - MIR SINE MIR -84 178 37 319 341 92 13 chr6 14705490 14705719 -167709523 - MLT1L LTR MaLR -23 592 346 2348 110 0 0 chr6 14705719 14706028 -167709214 + AluSc SINE Alu 1 309 0 303 114 0 0 chr6 14706300 14706344 -167708898 - MSTC LTR MaLR -12 416 373 2056 88 21 0 chr6 14706358 14706642 -167708600 - L1PA8 LINE L1 -2 6170 5881 2655 114 16 10 chr6 14706642 14707028 -167708214 - MSTC LTR MaLR -40 388 1 28 38 0 19 chr6 14707481 14707520 -167707722 + AT_rich Low_complexity Low_complexity 1 40 -12 2106 122 0 7 chr6 14707520 14707808 -167707434 - AluSg SINE Alu -24 286 1 28 38 0 19 chr6 14707808 14707821 -167707421 + AT_rich Low_complexity Low_complexity 40 52 0 303 330 128 21 chr6 14708400 14708588 -167706654 - MIR SINE MIR -35 227 20 469 165 39 29 chr6 14708607 14708710 -167706532 + MER5B DNA MER1_type 1 104 -74 2288 146 59 7 chr6 14708738 14709142 -167706100 - MSTB1 LTR MaLR -3 429 5 246 214 253 33 chr6 14709394 14709552 -167705690 - L1ME3A LINE L1 -230 5940 5764 1664 170 43 0 chr6 14709590 14709867 -167705375 + AluJb SINE Alu 1 289 -23 387 290 61 20 chr6 14709878 14710369 -167704873 - L1ME3A LINE L1 -644 5526 4987 904 243 74 49 chr6 14710377 14710768 -167704474 - MLT1I LTR MaLR 0 409 9 700 158 83 0 chr6 14711051 14711171 -167704071 + FLAM_A SINE Alu 2 131 -2 267 262 36 12 chr6 14712450 14712534 -167702708 + L3 LINE CR1 1384 1469 -108 4370 145 58 48 chr6 14712541 14713927 -167701315 + pTR5 LTR ERV1 743 2438 0 357 24 0 0 chr6 14713938 14713980 -167701262 + (TA)n Simple_repeat Simple_repeat 2 43 0 941 239 79 45 chr6 14714046 14714468 -167700774 - MLT1C LTR MaLR -5 462 1 2433 94 0 3 chr6 14716355 14716663 -167698579 - AluSc SINE Alu -2 307 1 256 276 0 13 chr6 14717317 14717393 -167697849 + C-rich Low_complexity Low_complexity 4 78 0 1918 179 0 3 chr6 14717454 14717766 -167697476 - AluJo SINE Alu -1 311 1 2190 120 17 0 chr6 14717843 14718142 -167697100 + AluSx SINE Alu 1 304 -8 262 309 60 1 chr6 14718605 14718749 -167696493 + MIR SINE MIR 20 172 -64 278 247 136 0 chr6 14721151 14721232 -167694010 + MLT1J1 LTR MaLR 1 92 -354 314 218 13 13 chr6 14721233 14721311 -167693931 + MLT1J1 LTR MaLR 369 446 0 1447 163 66 42 chr6 14721358 14721646 -167693596 - AluJb SINE Alu -12 300 6 2628 205 5 51 chr6 14721854 14721888 -167693354 - MLT2B3 LTR ERVL -6 548 514 405 0 0 0 chr6 14721888 14721933 -167693309 + (CA)n Simple_repeat Simple_repeat 2 46 0 2628 205 5 51 chr6 14721933 14722103 -167693139 - MLT2B3 LTR ERVL -40 514 338 2154 135 27 43 chr6 14722103 14722473 -167692769 - THE1B LTR MaLR 0 364 1 2628 205 5 51 chr6 14722473 14722837 -167692405 - MLT2B3 LTR ERVL -216 338 5 333 47 0 0 chr6 14723691 14723734 -167691508 + (TG)n Simple_repeat Simple_repeat 1 43 0 2340 106 0 0 chr6 14724342 14724645 -167690597 - AluSq SINE Alu -10 303 1 243 302 62 0 chr6 14725031 14725127 -167690115 - MIR SINE MIR -72 190 89 1618 199 89 35 chr6 14725343 14725715 -167689527 - MSTD LTR MaLR 0 396 5 207 235 29 29 chr6 14725892 14725960 -167689282 + CT-rich Low_complexity Low_complexity 5 72 0 554 224 135 86 chr6 14726122 14726367 -167688875 - LTR41 LTR ERVL -7 766 510 446 226 185 0 chr6 14726644 14726790 -167688452 - LTR41 LTR ERVL -581 192 20 255 277 53 11 chr6 14727113 14727207 -167688035 + L2 LINE L2 3172 3269 -44 326 241 46 0 chr6 14728039 14728126 -167687116 + L2 LINE L2 3223 3313 0 4179 143 49 98 chr6 14728131 14729422 -167685820 + pTR5 LTR ERV1 7 557 -157 1226 243 53 27 chr6 14729438 14729775 -167685467 - MLT1A1 LTR MaLR -15 350 5 482 301 15 36 chr6 14729779 14729975 -167685267 - MLT1K LTR MaLR -40 548 357 682 235 67 10 chr6 14730006 14730211 -167685031 - MER20B DNA MER1_type 0 219 3 1596 204 74 71 chr6 14730404 14730928 -167684314 - MLT1F LTR MaLR -13 529 4 414 149 11 21 chr6 14731974 14732068 -167683174 + CT-rich Low_complexity Low_complexity 2 94 0 1710 164 0 25 chr6 14732070 14732350 -167682892 - AluJo SINE Alu -39 273 1 436 177 0 0 chr6 14733121 14733200 -167682042 + MIR SINE MIR 75 153 -109 1862 148 62 28 chr6 14733200 14733557 -167681685 + THE1C LTR MaLR 1 369 -6 2300 107 0 3 chr6 14733732 14734030 -167681212 - AluSx SINE Alu -14 298 2 307 339 68 8 chr6 14735818 14736054 -167679188 + L2 LINE L2 2808 3057 -215 324 204 7 40 chr6 14737528 14737680 -167677562 + T-rich Low_complexity Low_complexity 4 150 0 220 254 36 0 chr6 14738258 14738313 -167676929 + CT-rich Low_complexity Low_complexity 1 57 0 246 338 0 13 chr6 14739756 14739833 -167675409 + MIR SINE MIR 36 111 -97 1582 158 32 57 chr6 14739899 14740215 -167675027 + AluJb SINE Alu 1 308 -4 1431 202 92 56 chr6 14740819 14740922 -167674320 + MLT1C LTR MaLR 6 104 -363 2336 110 0 3 chr6 14740922 14741231 -167674011 + AluSg SINE Alu 1 308 -2 1431 202 92 56 chr6 14741231 14741573 -167673669 + MLT1C LTR MaLR 104 467 0 489 17 0 0 chr6 14741594 14741652 -167673590 + (CA)n Simple_repeat Simple_repeat 2 59 0 585 208 47 0 chr6 14744192 14744298 -167670944 + FLAM_A SINE Alu 2 112 -30 1076 257 170 13 chr6 14745774 14746163 -167669079 + MLT1J2 LTR MaLR 1 450 0 1974 167 0 7 chr6 14746921 14747215 -167668027 - AluSx SINE Alu -20 292 1 336 191 0 0 chr6 14747400 14747484 -167667758 + CT-rich Low_complexity Low_complexity 2 85 0 842 211 0 0 chr6 14748620 14748767 -167666475 - FRAM SINE Alu -26 150 4 2186 128 0 0 chr6 14750657 14750953 -167664289 - AluSx SINE Alu -16 296 1 6309 48 10 15 chr6 14751197 14752002 -167663240 - L1PA8 LINE L1 0 6172 5372 1174 150 0 0 chr6 14752248 14752421 -167662821 - AluSg/x SINE Alu -2 308 136 304 242 63 0 chr6 14752506 14752601 -167662641 + MIR3 SINE MIR 101 201 -7 227 325 187 0 chr6 14752859 14753025 -167662217 - MIR SINE MIR -21 241 45 450 336 76 4 chr6 14753146 14753384 -167661858 + L2 LINE L2 3059 3313 0 198 0 0 0 chr6 14753653 14753675 -167661567 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2544 62 0 3 chr6 14754225 14754531 -167660711 - AluY SINE Alu -6 305 1 2166 116 7 3 chr6 14755385 14755686 -167659556 - AluSx SINE Alu -10 302 1 2274 88 3 0 chr6 14756083 14756394 -167658848 - AluSp SINE Alu 0 312 1 33 25 0 0 chr6 14756394 14756434 -167658808 + AT_rich Low_complexity Low_complexity 1 40 0 691 215 53 38 chr6 14757115 14757168 -167658074 + L2 LINE L2 3102 3153 -160 1870 144 77 12 chr6 14757168 14757508 -167657734 - MER47A DNA MER2_type -4 362 1 691 215 53 38 chr6 14757508 14757663 -167657579 + L2 LINE L2 3153 3313 0 373 200 104 17 chr6 14757842 14757957 -167657285 + L3 LINE CR1 1247 1371 -206 297 299 10 21 chr6 14758030 14758127 -167657115 + MER5A DNA MER1_type 72 167 -22 195 321 27 36 chr6 14758044 14758156 -167657086 - MER5A DNA MER1_type -75 114 4 * 2173 125 0 3 chr6 14758239 14758536 -167656706 + AluSq SINE Alu 7 302 -11 1023 121 83 0 chr6 14758906 14759063 -167656179 + THE1C LTR MaLR 1 170 -205 2088 153 31 0 chr6 14760058 14760379 -167654863 - MER7A DNA MER2_type 0 346 18 228 35 0 0 chr6 14761524 14761553 -167653689 + (CA)n Simple_repeat Simple_repeat 2 30 0 194 310 70 0 chr6 14762812 14762883 -167652359 - L2 LINE L2 -42 3230 3155 349 246 68 8 chr6 14763168 14763286 -167651956 - L2 LINE L2 -4 3309 3185 3176 175 109 71 chr6 14763848 14764757 -167650485 + MER63D DNA MER1_type 2 955 -106 2208 111 0 3 chr6 14764757 14765055 -167650187 - AluSg SINE Alu -9 301 5 3176 175 109 71 chr6 14765055 14765167 -167650075 + MER63D DNA MER1_type 955 1061 0 2310 95 0 0 chr6 14765252 14765565 -167649677 + AluSg SINE Alu 1 313 0 2014 132 10 7 chr6 14766308 14766636 -167648606 - AluJb SINE Alu 0 329 1 833 185 20 0 chr6 14766919 14767070 -167648172 - FRAM SINE Alu -25 151 1 270 81 0 0 chr6 14767397 14767434 -167647808 + (A)n Simple_repeat Simple_repeat 1 37 0 2355 92 0 7 chr6 14767436 14767772 -167647470 + AluSg SINE Alu 1 310 0 216 0 0 0 chr6 14768047 14768071 -167647171 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 192 250 20 60 chr6 14768387 14768487 -167646755 + L2 LINE L2 2566 2661 -653 265 232 0 0 chr6 14768534 14768603 -167646639 + MER5A DNA MER1_type 15 83 -106 1021 245 65 23 chr6 14768644 14769016 -167646226 + L1ME1 LINE L1 5752 6119 -45 2113 244 51 16 chr6 14769039 14769288 -167645954 + L1MC4 LINE L1 6990 7229 -813 734 205 58 18 chr6 14769288 14769459 -167645783 + MER45A DNA AcHobo 1 178 0 2113 244 51 16 chr6 14769459 14769899 -167645343 + L1MC4 LINE L1 7229 7893 -149 1052 231 86 10 chr6 14769997 14770413 -167644829 - L2 LINE L2 -261 3052 2608 1151 171 139 81 chr6 14771806 14772151 -167643091 + MLT1A1 LTR MaLR 1 365 0 2158 142 40 18 chr6 14772434 14772814 -167642428 + MLT1B LTR MaLR 3 390 0 2009 169 98 0 chr6 14772818 14773268 -167641974 + MLT1B-int LTR MaLR 5 600 -771 287 186 68 0 chr6 14773272 14773331 -167641911 + MLT1B LTR MaLR 95 157 -233 1635 153 11 30 chr6 14773613 14773881 -167641361 + AluJo SINE Alu 1 263 -49 216 0 0 0 chr6 14774554 14774578 -167640664 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2175 128 3 0 chr6 14774587 14774892 -167640350 + AluSx SINE Alu 1 306 -6 471 220 0 0 chr6 14775729 14775897 -167639345 + (TG)n Simple_repeat Simple_repeat 1 168 0 629 114 0 57 chr6 14776003 14776108 -167639134 + AluJo SINE Alu 37 135 -177 307 243 68 10 chr6 14776177 14776280 -167638962 - MIR SINE MIR -30 232 124 2309 108 0 0 chr6 14776315 14776621 -167638621 + AluSx SINE Alu 1 306 -6 360 0 0 0 chr6 14776915 14776955 -167638287 + (TG)n Simple_repeat Simple_repeat 1 40 0 279 71 0 0 chr6 14776955 14776997 -167638245 + (GA)n Simple_repeat Simple_repeat 2 43 0 195 167 0 0 chr6 14777599 14777635 -167637607 - MIR SINE MIR -61 147 112 2384 95 0 3 chr6 14777645 14777951 -167637291 - AluSx SINE Alu -7 305 1 543 179 77 8 chr6 14778442 14778559 -167636683 - Charlie4 DNA MER1_type -5 1956 1832 830 188 55 143 chr6 14778604 14778721 -167636521 - MLT1A2 LTR MaLR 0 467 341 5883 66 33 3 chr6 14778721 14779478 -167635764 + LTR17 LTR ERV1 1 780 0 830 188 55 143 chr6 14779478 14779788 -167635454 - MLT1A2 LTR MaLR -126 341 2 * 1034 218 25 8 chr6 14779788 14780014 -167635228 - Charlie4 DNA MER1_type -1692 269 40 382 94 0 0 chr6 14780018 14780071 -167635171 + MLT2A1 LTR ERVL 1 53 -391 2195 82 147 0 chr6 14780149 14780468 -167634774 + MLT2A1 LTR ERVL 39 404 -40 282 233 47 0 chr6 14780472 14780558 -167634684 + L1MC4 LINE L1 6614 6703 -1339 316 62 62 0 chr6 14780561 14780609 -167634633 + MLT2A1 LTR ERVL 390 440 -4 1851 154 7 10 chr6 14781792 14782097 -167633145 + AluJb SINE Alu 6 309 -3 2222 94 0 11 chr6 14782106 14782393 -167632849 + AluSx SINE Alu 21 304 -8 2142 136 3 0 chr6 14782689 14782991 -167632251 + AluSx SINE Alu 1 303 -9 254 316 106 52 chr6 14783216 14783621 -167631621 - L1ME LINE L1 -335 5786 5360 27 0 0 0 chr6 14783764 14783791 -167631451 + AT_rich Low_complexity Low_complexity 1 27 0 315 108 31 108 chr6 14783844 14783885 -167631357 - MER41D LTR ERV1 0 557 521 2040 122 140 34 chr6 14783885 14784102 -167631140 - MSTA LTR MaLR 0 428 235 1904 162 0 3 chr6 14784102 14784398 -167630844 - AluSx SINE Alu -17 295 1 2040 122 140 34 chr6 14784398 14784566 -167630676 - MSTA LTR MaLR -193 235 2 315 108 31 108 chr6 14784566 14784589 -167630653 - MER41D LTR ERV1 -36 521 498 193 191 24 0 chr6 14784595 14784637 -167630605 - MER5B DNA MER1_type -134 44 2 369 0 0 0 chr6 14784661 14784702 -167630540 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 330 28 18 chr6 14785332 14785441 -167629801 - MIR SINE MIR 0 262 153 324 243 200 37 chr6 14785819 14786144 -167629098 + L1MC4a LINE L1 5852 6229 -1579 724 130 32 24 chr6 14786570 14786693 -167628549 + FLAM_C SINE Alu 15 138 -5 1718 230 20 81 chr6 14786711 14786920 -167628322 + L1MC5 LINE L1 6657 6877 -1084 1936 120 0 0 chr6 14786920 14787178 -167628064 + AluSx SINE Alu 39 296 -16 1718 230 20 81 chr6 14787178 14787577 -167627665 + L1MC5 LINE L1 6877 7228 -733 4045 130 13 8 chr6 14787618 14788250 -167626992 + MER41B LTR ERV1 1 635 0 421 195 0 0 chr6 14788322 14788399 -167626843 - MLT1C LTR MaLR -184 283 207 536 177 83 44 chr6 14788435 14788616 -167626626 + L1MC5 LINE L1 7309 7496 -465 1932 183 93 45 chr6 14788619 14789015 -167626227 + MLT1C LTR MaLR 1 377 -90 2116 116 10 3 chr6 14789015 14789318 -167625924 - AluSx SINE Alu -7 305 1 1932 183 93 45 chr6 14789318 14789347 -167625895 + MLT1C LTR MaLR 377 403 -64 4860 83 40 16 chr6 14789347 14790022 -167625220 + LTR8 LTR ERV1 1 691 0 1932 183 93 45 chr6 14790022 14790037 -167625205 + MLT1C LTR MaLR 403 463 -4 917 203 146 22 chr6 14790043 14790364 -167624878 + L1MC5 LINE L1 7495 7855 -106 326 240 96 68 chr6 14790417 14790563 -167624679 + MER63 DNA MER1_type 687 1060 0 2204 105 0 22 chr6 14790647 14790824 -167624418 - AluSp SINE Alu -7 306 138 2486 92 0 0 chr6 14790824 14791128 -167624114 - AluSc SINE Alu -5 304 1 2204 105 0 22 chr6 14791128 14791263 -167623979 - AluSp SINE Alu -175 138 1 1371 190 129 92 chr6 14791323 14791822 -167623420 - LTR48 LTR ERV1 0 644 161 1877 141 0 17 chr6 14791822 14792113 -167623129 + AluJo SINE Alu 1 286 -26 1371 190 129 92 chr6 14792113 14792281 -167622961 - LTR48 LTR ERV1 -483 161 1 590 221 66 0 chr6 14792299 14792435 -167622807 + MIR SINE MIR 56 200 -62 27 0 0 0 chr6 14793058 14793085 -167622157 + AT_rich Low_complexity Low_complexity 1 27 0 396 285 13 20 chr6 14793718 14793869 -167621373 + MIR SINE MIR 80 229 -33 21 0 0 0 chr6 14793952 14793973 -167621269 + AT_rich Low_complexity Low_complexity 1 21 0 309 26 0 0 chr6 14794480 14794518 -167620724 + (TC)n Simple_repeat Simple_repeat 2 39 0 341 153 14 0 chr6 14794518 14794590 -167620652 + (TA)n Simple_repeat Simple_repeat 1 73 0 2210 105 3 0 chr6 14794590 14794875 -167620367 - AluSp SINE Alu -24 289 4 293 281 95 71 chr6 14795024 14795102 -167620140 + L2 LINE L2 2344 2419 -895 2631 181 50 6 chr6 14795102 14795599 -167619643 - LTR53 LTR ERVL 0 519 1 293 281 95 71 chr6 14795599 14795858 -167619384 + L2 LINE L2 2419 2689 -625 * 400 254 44 0 chr6 14795840 14795954 -167619288 - MER91A DNA MER1_type -76 120 2 254 332 113 43 chr6 14796083 14796481 -167618761 + L2 LINE L2 2828 3253 -19 222 37 0 0 chr6 14796573 14796600 -167618642 + (GA)n Simple_repeat Simple_repeat 2 28 0 480 111 0 0 chr6 14796612 14796684 -167618558 + (TA)n Simple_repeat Simple_repeat 2 73 0 256 289 44 0 chr6 14797219 14797309 -167617933 - MIR3 SINE MIR -8 200 107 2304 99 10 0 chr6 14797700 14798002 -167617240 - AluSp SINE Alu -6 307 3 248 306 0 0 chr6 14799153 14799215 -167616027 - MLT1I LTR MaLR -123 286 225 * 319 286 28 62 chr6 14799204 14799382 -167615860 - MLT1H LTR MaLR -281 268 97 2600 50 0 0 chr6 14799786 14800085 -167615157 - AluY SINE Alu -12 299 1 1851 158 66 34 chr6 14800868 14801217 -167614025 - MLT1A1 LTR MaLR -5 360 1 314 299 10 0 chr6 14802148 14802245 -167612997 + L1ME4a LINE L1 5955 6052 -69 734 267 98 7 chr6 14802246 14802531 -167612711 + MARNA DNA Mariner 261 571 -15 395 289 59 70 chr6 14803654 14804076 -167611166 - MLT1H LTR MaLR -2 565 46 190 259 0 17 chr6 14804518 14804576 -167610666 + MIR3 SINE MIR 142 198 -10 1112 105 0 20 chr6 14804851 14805004 -167610238 + AluSq/x SINE Alu 1 150 -162 282 56 0 0 chr6 14805004 14805040 -167610202 + (CA)n Simple_repeat Simple_repeat 1 36 0 191 285 8 98 chr6 14805359 14805482 -167609760 + L2 LINE L2 3202 3313 0 898 299 97 24 chr6 14807210 14807718 -167607524 - MLT1K LTR MaLR -18 570 26 243 274 0 24 chr6 14807734 14807811 -167607431 - L1MC4a LINE L1 -1631 6177 6101 2274 108 3 0 chr6 14807811 14808107 -167607135 + AluSq SINE Alu 1 297 -16 531 160 0 0 chr6 14808113 14808207 -167607035 + GA-rich Low_complexity Low_complexity 3 96 0 2003 44 0 48 chr6 14808349 14808600 -167606642 + AluY SINE Alu 54 292 -19 2452 254 51 37 chr6 14808608 14809157 -167606085 - L1MC4a LINE L1 -748 5398 5366 2272 108 0 13 chr6 14809157 14809473 -167605769 - AluSx SINE Alu 0 312 1 2452 254 51 37 chr6 14809473 14810108 -167605134 - L1MC4a LINE L1 -780 5366 4742 1778 149 22 0 chr6 14810150 14810418 -167604824 - AluJb SINE Alu -18 294 21 874 261 327 10 chr6 14810427 14811296 -167603946 - L2 LINE L2 -1592 1722 579 2207 105 7 26 chr6 14812205 14812511 -167602731 - AluSq SINE Alu -13 300 1 209 289 53 13 chr6 14814061 14814137 -167601105 + MIR SINE MIR 112 190 -72 529 254 133 38 chr6 14815242 14815482 -167599760 + Charlie8 DNA MER1_type 2 264 -2153 336 238 31 85 chr6 14815867 14816064 -167599178 - MLT1H LTR MaLR -200 349 131 4182 124 17 71 chr6 14816064 14816302 -167598940 + LTR62 LTR ERVK 1 250 -469 2359 109 0 0 chr6 14816302 14816614 -167598628 - AluSq SINE Alu -1 312 1 4182 124 17 71 chr6 14816614 14817135 -167598107 + LTR62 LTR ERVK 250 719 0 336 238 31 85 chr6 14817135 14817161 -167598081 - MLT1H LTR MaLR -418 131 105 1831 270 58 13 chr6 14817229 14817751 -167597491 + MER77 LTR ERV1 54 598 -7 726 280 109 25 chr6 14817895 14818263 -167596979 - L2 LINE L2 0 3313 2915 21 0 0 0 chr6 14818295 14818316 -167596926 + AT_rich Low_complexity Low_complexity 1 21 0 2080 139 30 0 chr6 14818319 14818621 -167596621 + AluSx SINE Alu 1 311 -1 210 71 0 0 chr6 14818621 14818649 -167596593 + (GAGAA)n Simple_repeat Simple_repeat 1 28 0 880 93 0 0 chr6 14819846 14819954 -167595288 + FLAM_C SINE Alu 1 108 -35 1413 281 101 65 chr6 14820906 14821540 -167593702 + L1ME4a LINE L1 59 746 -5373 1870 111 92 0 chr6 14821540 14821811 -167593431 + AluSq SINE Alu 3 298 -15 1413 281 101 65 chr6 14821811 14822220 -167593022 + L1ME4a LINE L1 746 1139 -4980 2414 81 3 13 chr6 14822317 14822627 -167592615 + AluSx SINE Alu 1 307 -5 403 301 135 17 chr6 14822644 14822933 -167592309 + HAL1 LINE L1 1433 1755 -752 2032 121 45 0 chr6 14823214 14823386 -167591856 - AluSx SINE Alu -7 305 113 198 0 0 0 chr6 14823386 14823408 -167591834 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2032 121 45 0 chr6 14823408 14823525 -167591717 - AluSx SINE Alu -199 113 3 368 255 216 33 chr6 14823614 14823850 -167591392 + L1ME4a LINE L1 2093 2284 -3845 2409 83 10 0 chr6 14823850 14824151 -167591091 + AluSg SINE Alu 1 304 -6 368 255 216 33 chr6 14824151 14824580 -167590662 + L1ME4a LINE L1 2284 2880 -3249 1299 277 88 34 chr6 14824635 14824967 -167590275 + L1ME4a LINE L1 4312 4625 -1504 1900 128 3 54 chr6 14824967 14825280 -167589962 - AluJb SINE Alu -15 297 1 1299 277 88 34 chr6 14825280 14825853 -167589389 + L1ME4a LINE L1 4625 5266 -863 898 134 8 0 chr6 14825994 14826121 -167589121 + FLAM_C SINE Alu 1 128 -5 1798 35 22 35 chr6 14826336 14826566 -167588676 + AluY SINE Alu 80 306 -5 252 193 137 13 chr6 14826677 14826772 -167588470 + L1M1 LINE L1 5476 5584 -561 649 241 145 68 chr6 14826786 14827213 -167588029 + L1ME4a LINE L1 5421 5880 -224 21 36 0 0 chr6 14827289 14827317 -167587925 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 14827814 14827835 -167587407 + GC_rich Low_complexity Low_complexity 1 21 0 340 147 11 32 chr6 14827835 14827930 -167587312 + G-rich Low_complexity Low_complexity 6 98 0 682 277 21 25 chr6 14829685 14829920 -167585322 - MIR SINE MIR -10 252 19 1789 164 0 24 chr6 14831464 14831751 -167583491 - AluJb SINE Alu -20 292 13 804 136 7 57 chr6 14831778 14831918 -167583324 + FLAM_C SINE Alu 1 133 0 2384 99 0 3 chr6 14833373 14833685 -167581557 - AluSq SINE Alu -2 311 1 2056 200 51 16 chr6 14835074 14835524 -167579718 + MLT1C LTR MaLR 2 467 0 355 167 0 17 chr6 14835658 14835718 -167579524 - Tigger4(Zombi) DNA MER2_type 0 2731 2673 273 61 0 0 chr6 14835701 14835734 -167579508 - Tigger4(Zombi) DNA MER2_type -2698 33 1 * 308 300 126 17 chr6 14836288 14836476 -167578766 - MIR SINE MIR -51 211 6 255 318 56 39 chr6 14836658 14836837 -167578405 - MIR SINE MIR -78 184 3 2254 118 0 3 chr6 14837271 14837576 -167577666 - AluSx SINE Alu -8 304 1 279 0 0 0 chr6 14840120 14840151 -167575091 + (TG)n Simple_repeat Simple_repeat 2 32 0 1739 153 3 29 chr6 14840729 14841037 -167574205 + AluJo SINE Alu 1 300 -12 215 245 296 13 chr6 14842463 14842622 -167572620 + L2 LINE L2 3104 3307 -6 548 271 70 35 chr6 14842741 14842970 -167572272 + MIR SINE MIR 18 254 -8 219 195 0 0 chr6 14843651 14843692 -167571550 + MIR SINE MIR 108 148 -114 373 194 54 43 chr6 14844941 14845034 -167570208 - L2 LINE L2 -25 3247 3154 971 103 7 0 chr6 14847006 14847151 -167568091 + L1PA13 LINE L1 6018 6163 0 2482 65 0 0 chr6 14847556 14847850 -167567392 + AluY SINE Alu 1 294 -17 525 319 60 13 chr6 14847968 14848203 -167567039 + MIR SINE MIR 9 254 -8 2283 99 3 0 chr6 14848502 14848795 -167566447 + AluSg SINE Alu 1 294 -16 225 0 0 0 chr6 14848811 14848836 -167566406 + (GA)n Simple_repeat Simple_repeat 2 26 0 2530 33 7 23 chr6 14850511 14850813 -167564429 + AluY SINE Alu 3 299 -12 194 307 67 13 chr6 14852186 14852261 -167562981 - MIR SINE MIR -51 211 133 356 234 94 23 chr6 14852579 14852707 -167562535 + MER117 DNA MER1_type 5 141 -56 1849 197 95 12 chr6 14852718 14853149 -167562093 + MLT1C LTR MaLR 1 467 0 286 198 105 23 chr6 14853776 14853862 -167561380 + MIR SINE MIR 115 207 -55 180 0 0 0 chr6 14854152 14854172 -167561070 + (CAG)n Simple_repeat Simple_repeat 3 22 0 1881 113 0 82 chr6 14854439 14854757 -167560485 + AluJb SINE Alu 1 292 -20 346 287 37 24 chr6 14856193 14856339 -167558903 - MIR SINE MIR -62 146 11 261 163 0 0 chr6 14857281 14857330 -167557912 + (TG)n Simple_repeat Simple_repeat 2 50 0 1319 189 69 71 chr6 14857410 14857802 -167557440 + MER96B DNA MER1_type? 25 415 -2 425 316 105 46 chr6 14858950 14859387 -167555855 - HAL1 LINE L1 -1855 652 190 591 15 0 0 chr6 14861778 14861846 -167553396 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 2253 98 14 7 chr6 14861846 14862131 -167553111 - AluSp SINE Alu -23 290 1 633 156 7 14 chr6 14862290 14862431 -167552811 + CT-rich Low_complexity Low_complexity 2 141 0 768 286 86 26 chr6 14862535 14862874 -167552368 - L3 LINE CR1 -695 882 524 449 330 44 76 chr6 14863782 14864491 -167550751 + L2 LINE L2 2217 2902 -412 21 0 0 0 chr6 14865040 14865061 -167550181 + AT_rich Low_complexity Low_complexity 1 21 0 390 151 0 0 chr6 14865184 14865257 -167549985 + CT-rich Low_complexity Low_complexity 2 74 0 463 211 37 9 chr6 14865504 14865613 -167549629 + MLT1F1 LTR MaLR 6 117 -450 1460 251 99 12 chr6 14865703 14866190 -167549052 - L1MC4a LINE L1 -1963 5845 5317 484 264 112 48 chr6 14866447 14866742 -167548500 - L1MC4a LINE L1 -1095 5051 4738 317 137 20 0 chr6 14866749 14866800 -167548442 + U7 snRNA snRNA 2 53 -10 1423 187 87 22 chr6 14866835 14867156 -167548086 - MER2 DNA MER2_type -2 342 1 963 26 0 0 chr6 14867330 14867444 -167547798 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 1622 188 35 0 chr6 14867467 14867754 -167547488 - AluJo SINE Alu -15 297 1 488 258 0 39 chr6 14868080 14868208 -167547034 - L2 LINE L2 0 3313 3191 361 125 33 33 chr6 14868234 14868354 -167546888 + (TA)n Simple_repeat Simple_repeat 2 121 0 413 323 30 36 chr6 14868600 14868767 -167546475 + MLT1K LTR MaLR 252 417 -171 1461 135 107 21 chr6 14868811 14869092 -167546150 + MSTA LTR MaLR 1 305 -123 4867 150 18 32 chr6 14869096 14870092 -167545150 - MER11C LTR ERVK 0 1071 1 746 154 88 0 chr6 14870092 14870209 -167545033 + MSTA LTR MaLR 300 428 0 237 222 48 32 chr6 14870213 14870276 -167544966 + MLT1K LTR MaLR 465 528 -60 373 220 48 30 chr6 14871044 14871211 -167544031 + MER20B DNA MER1_type 1 172 -47 206 32 32 0 chr6 14871730 14871761 -167543481 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1677 111 7 117 chr6 14871765 14872072 -167543170 - AluSg SINE Alu -37 273 1 2254 84 42 0 chr6 14873744 14874030 -167541212 - AluSc SINE Alu -11 298 1 249 33 0 0 chr6 14874123 14874153 -167541089 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1932 164 50 24 chr6 14874698 14875077 -167540165 + MLT1B LTR MaLR 1 389 -1 2427 69 30 3 chr6 14876601 14876904 -167538338 + AluY SINE Alu 1 311 0 236 239 87 11 chr6 14877742 14877834 -167537408 - MER5C DNA MER1_type -8 316 218 319 262 56 19 chr6 14877863 14877970 -167537272 - MER5C DNA MER1_type -212 112 2 221 313 162 0 chr6 14878342 14878441 -167536801 - L2 LINE L2 0 3313 3199 541 205 0 31 chr6 14879393 14879520 -167535722 + L2 LINE L2 3190 3312 -1 1908 211 54 18 chr6 14880478 14881049 -167534193 + L1MB7 LINE L1 1431 2115 -4269 * 2345 200 97 35 chr6 14881048 14881727 -167533515 + L1MB7 LINE L1 3635 4355 -2027 3736 154 71 43 chr6 14881746 14882238 -167533004 + L1MB7 LINE L1 4849 5326 -1094 2220 109 20 0 chr6 14882238 14882542 -167532700 + AluSx SINE Alu 3 312 0 3736 154 71 43 chr6 14882542 14883496 -167531746 + L1MB7 LINE L1 5326 6323 -97 962 159 12 18 chr6 14883502 14883672 -167531570 + AluJo SINE Alu 121 289 -23 290 197 14 0 chr6 14883679 14883750 -167531492 + L1MB3 LINE L1 6111 6182 -1 512 214 162 12 chr6 14883851 14884024 -167531218 - ORSL DNA AcHobo -76 199 1 21 0 0 0 chr6 14884536 14884557 -167530685 + AT_rich Low_complexity Low_complexity 1 21 0 462 193 73 27 chr6 14885646 14885796 -167529446 + MIR3 SINE MIR 22 178 -30 1910 199 146 7 chr6 14885876 14886314 -167528928 + MLT1D LTR MaLR 7 505 0 362 311 25 12 chr6 14888833 14888994 -167526248 + MIR SINE MIR 65 227 -35 1626 123 119 12 chr6 14889113 14889397 -167525845 + AluSg SINE Alu 1 311 0 491 270 15 115 chr6 14890505 14890645 -167524597 - MIR SINE MIR 0 262 160 2118 132 3 0 chr6 14890645 14890940 -167524302 - AluSx SINE Alu -16 296 1 491 270 15 115 chr6 14890940 14891069 -167524173 - MIR SINE MIR -102 160 20 203 159 45 0 chr6 14891246 14891290 -167523952 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2316 111 0 0 chr6 14892490 14892796 -167522446 - AluSx SINE Alu -6 306 1 291 104 0 0 chr6 14893345 14893393 -167521849 + (TG)n Simple_repeat Simple_repeat 1 48 0 273 228 0 18 chr6 14894605 14894662 -167520580 - L2 LINE L2 0 3272 3217 1724 169 7 3 chr6 14895274 14895575 -167519667 - AluJo SINE Alu -10 302 1 1414 197 76 80 chr6 14895689 14896151 -167519091 + MLT1C LTR MaLR 8 467 0 449 300 22 39 chr6 14896153 14896333 -167518909 - MIR SINE MIR -76 186 10 1703 113 57 47 chr6 14896988 14897289 -167517953 - AluSx SINE Alu -8 304 1 453 181 12 0 chr6 14897301 14897384 -167517858 - MER5A DNA MER1_type -84 105 22 555 250 6 121 chr6 14897425 14897781 -167517461 - L1ME4a LINE L1 -225 5896 5582 765 181 0 0 chr6 14898389 14898516 -167516726 - FLAM_A SINE Alu -6 127 1 182 222 0 0 chr6 14899317 14899362 -167515880 + L2 LINE L2 3264 3308 -5 525 212 10 0 chr6 14899362 14899461 -167515781 - MER117 DNA MER1_type -97 100 1 200 170 213 0 chr6 14901530 14901577 -167513665 + L2 LINE L2 3235 3291 -22 462 244 119 28 chr6 14901634 14901810 -167513432 + MIR SINE MIR 68 259 -3 221 136 0 23 chr6 14902456 14902500 -167512742 + (TTC)n Simple_repeat Simple_repeat 2 44 0 218 280 28 65 chr6 14903604 14903711 -167511531 - MER5A DNA MER1_type -1 188 86 350 231 215 92 chr6 14905463 14905658 -167509584 + MIR SINE MIR 12 230 -32 388 267 20 0 chr6 14905921 14906022 -167509220 - MIR SINE MIR -10 252 150 4020 153 24 13 chr6 14906023 14906721 -167508521 + MER50 LTR ERV1 1 706 -28 449 262 16 48 chr6 14906730 14906856 -167508386 - MIR SINE MIR -111 151 30 211 234 0 0 chr6 14906862 14906909 -167508333 + T-rich Low_complexity Low_complexity 1 47 0 227 306 47 35 chr6 14906953 14907038 -167508204 + L2 LINE L2 3222 3307 -6 285 277 40 62 chr6 14907356 14907528 -167507714 + MIR SINE MIR 16 190 -18 255 329 71 35 chr6 14907590 14907760 -167507482 - MLT1J2 LTR MaLR -13 437 262 350 206 28 65 chr6 14907810 14907917 -167507325 - MLT1J2 LTR MaLR -321 129 27 657 281 139 8 chr6 14908927 14909165 -167506077 + L2 LINE L2 3042 3310 -3 935 249 190 57 chr6 14909868 14910346 -167504896 + MLT1F LTR MaLR 1 542 0 2086 178 5 22 chr6 14910431 14910482 -167504760 - MLT1A1 LTR MaLR 0 365 315 2297 130 92 27 chr6 14910482 14910883 -167504359 + MSTA LTR MaLR 2 428 0 2086 178 5 22 chr6 14910883 14911201 -167504041 - MLT1A1 LTR MaLR -50 315 2 484 302 58 9 chr6 14911441 14911666 -167503576 - MLT1K LTR MaLR -15 573 338 347 264 25 33 chr6 14911934 14912055 -167503187 - MIR3 SINE MIR -80 128 9 323 308 48 27 chr6 14912094 14912240 -167503002 - MIR SINE MIR -19 243 95 582 229 0 0 chr6 14912519 14912761 -167502481 + (CA)n Simple_repeat Simple_repeat 1 242 0 311 274 129 23 chr6 14913555 14913728 -167501514 + MIR SINE MIR 12 206 -56 268 337 154 35 chr6 14914973 14915142 -167500100 - MIR3 SINE MIR -13 195 7 1788 112 81 0 chr6 14915468 14915753 -167499489 - AluSx SINE Alu -4 308 1 666 235 207 5 chr6 14916803 14917020 -167498222 + MIR SINE MIR 2 262 0 257 320 21 41 chr6 14917045 14917142 -167498100 - MIR3 SINE MIR -45 163 69 309 146 0 0 chr6 14919093 14919141 -167496101 - MIR3 SINE MIR -48 160 113 200 271 59 68 chr6 14919163 14919281 -167495961 - MIR SINE MIR -98 164 48 263 172 78 16 chr6 14919538 14919602 -167495640 + L2 LINE L2 3236 3303 -10 2009 118 7 0 chr6 14919781 14920070 -167495172 + AluSq SINE Alu 1 291 -22 240 301 92 68 chr6 14920290 14920453 -167494789 + L3b LINE CR1 1329 1495 -88 221 128 21 0 chr6 14920583 14920630 -167494612 + GA-rich Low_complexity Low_complexity 1 48 0 28 48 0 0 chr6 14921447 14921489 -167493753 + GC_rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chr6 14921842 14921863 -167493379 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1621 184 29 0 chr6 14923335 14923612 -167491630 + MLT1A1 LTR MaLR 1 285 -80 533 274 70 13 chr6 14923908 14924065 -167491177 - MIR SINE MIR -51 211 46 805 278 76 23 chr6 14924281 14924623 -167490619 - MARNA DNA Mariner -166 420 61 1728 136 4 7 chr6 14924741 14925021 -167490221 - AluJb SINE Alu 0 312 34 279 206 118 0 chr6 14925742 14925810 -167489432 + MLT1L LTR MaLR 23 98 -517 923 225 37 0 chr6 14925843 14926034 -167489208 + MER58A DNA MER1_type 27 224 0 674 276 69 20 chr6 14926034 14926419 -167488823 + MLT1L LTR MaLR 148 597 -18 554 315 80 14 chr6 14926547 14926760 -167488482 - MIR SINE MIR -34 228 2 248 314 176 0 chr6 14926765 14926867 -167488375 + MIR SINE MIR 32 151 -111 2071 201 50 10 chr6 14929386 14929785 -167485457 - MLT1F LTR MaLR -4 538 124 736 258 122 14 chr6 14930087 14930300 -167484942 - MIR SINE MIR 0 262 27 329 231 15 0 chr6 14930484 14930549 -167484693 + LTR33 LTR ERVL 306 371 -150 668 144 152 8 chr6 14930552 14930682 -167484560 + MLT1D LTR MaLR 1 149 -356 1025 228 46 95 chr6 14930682 14930864 -167484378 - MER39 LTR ERV1 0 707 518 1727 134 48 3 chr6 14930864 14931156 -167484086 - AluSg SINE Alu -5 305 1 1025 228 46 95 chr6 14931156 14931503 -167483739 - MER39 LTR ERV1 -189 518 5 938 214 83 76 chr6 14931519 14931719 -167483523 + MLT1D LTR MaLR 166 370 -135 2151 110 0 3 chr6 14931719 14932028 -167483214 - AluSq SINE Alu -4 309 2 938 214 83 76 chr6 14932028 14932116 -167483126 + MLT1D LTR MaLR 370 456 -49 603 295 4 100 chr6 14934229 14934500 -167480742 + MIR SINE MIR 18 262 0 446 353 14 45 chr6 14935708 14936000 -167479242 - L2 LINE L2 -342 2972 2690 1138 270 42 15 chr6 14936505 14936838 -167478404 - MLT1I LTR MaLR -2 407 66 946 296 113 22 chr6 14937460 14938110 -167477132 + L2 LINE L2 2573 3311 -2 2023 106 0 13 chr6 14938555 14938856 -167476386 + AluSq SINE Alu 1 297 -16 248 306 0 0 chr6 14939853 14939915 -167475327 + MIR SINE MIR 190 251 -11 * 362 361 38 0 chr6 14939882 14940015 -167475227 - MIR SINE MIR -33 229 92 619 278 16 14 chr6 14940015 14940250 -167474992 - LTR33 LTR ERVL -2 519 278 283 221 0 29 chr6 14940561 14940665 -167474577 + CT-rich Low_complexity Low_complexity 4 104 0 208 297 136 17 chr6 14941152 14941270 -167473972 + MIR SINE MIR 19 150 -112 355 293 54 54 chr6 14942076 14942223 -167473019 + MIR SINE MIR 36 147 -61 192 188 0 0 chr6 14942226 14942258 -167472984 - L2 LINE L2 0 3313 3282 289 317 73 8 chr6 14942398 14942521 -167472721 - L2 LINE L2 -188 3084 2954 191 344 16 0 chr6 14942686 14942750 -167472492 - L2 LINE L2 -560 2754 2690 2402 84 0 0 chr6 14942753 14943064 -167472178 + AluSq SINE Alu 1 311 -2 1450 241 103 21 chr6 14943143 14943611 -167471631 + LTR33 LTR ERVL 7 512 -9 426 310 195 24 chr6 14943678 14944181 -167471061 - L2 LINE L2 -747 2567 1979 1017 178 70 37 chr6 14944758 14945015 -167470227 - L1MB2 LINE L1 0 6171 5907 513 221 0 0 chr6 14945019 14945123 -167470119 + Tigger7 DNA MER2_type 3 106 -2381 730 127 0 51 chr6 14945134 14945252 -167469990 + FLAM_C SINE Alu 13 124 -19 562 269 0 0 chr6 14945255 14945374 -167469868 + Tigger7 DNA MER2_type 101 219 -2268 563 140 35 53 chr6 14945375 14945407 -167469835 + Tigger7 DNA MER2_type 2380 2411 -80 2527 116 5 18 chr6 14945407 14945787 -167469455 + THE1C LTR MaLR 1 375 0 563 140 35 53 chr6 14945787 14945868 -167469374 + Tigger7 DNA MER2_type 2411 2491 0 508 200 42 58 chr6 14945868 14945988 -167469254 - L1MB3 LINE L1 -277 5906 5789 633 255 42 23 chr6 14947830 14948046 -167467196 + MIR SINE MIR 32 251 -11 413 284 148 6 chr6 14948117 14948286 -167466956 + MIR SINE MIR 51 243 -19 270 0 0 0 chr6 14948293 14948323 -167466919 + (TTA)n Simple_repeat Simple_repeat 3 32 0 207 0 0 0 chr6 14948448 14948471 -167466771 + (T)n Simple_repeat Simple_repeat 1 23 0 449 272 133 19 chr6 14949448 14949841 -167465401 + L1MC4a LINE L1 5176 5614 -507 307 284 99 67 chr6 14949854 14950167 -167465075 + L1MC4a LINE L1 5642 5964 -1844 351 60 0 0 chr6 14950270 14950320 -167464922 + (TG)n Simple_repeat Simple_repeat 1 50 0 1243 186 109 0 chr6 14950918 14951192 -167464050 + MER33 DNA MER1_type 1 304 -20 333 0 0 0 chr6 14952611 14952648 -167462594 + (CA)n Simple_repeat Simple_repeat 1 37 0 720 119 18 0 chr6 14953124 14953233 -167462009 - L1PA14 LINE L1 -522 5639 5529 3868 78 6 4 chr6 14953233 14953742 -167461500 + L1PA14 LINE L1 5642 6158 -3 348 288 51 0 chr6 14953785 14953903 -167461339 - MIR SINE MIR -29 233 110 262 180 82 16 chr6 14953913 14953974 -167461268 - MLT1I LTR MaLR -9 400 336 248 211 44 56 chr6 14954608 14954698 -167460544 - MIR SINE MIR -170 92 4 793 177 78 16 chr6 14954955 14955147 -167460095 - MER3 DNA MER1_type -4 205 2 2205 99 0 3 chr6 14955247 14955565 -167459677 + AluSg SINE Alu 1 317 0 391 161 49 37 chr6 14956323 14956404 -167458838 + MER103 DNA DNA 77 158 -8 4279 214 74 35 chr6 14957452 14958071 -167457171 + L1ME2 LINE L1 3915 4508 -1656 1835 159 0 7 chr6 14958071 14958354 -167456888 + AluJo SINE Alu 1 281 -31 4279 214 74 35 chr6 14958354 14959897 -167455345 + L1ME2 LINE L1 4508 6163 -1 372 285 64 29 chr6 14960165 14960337 -167454905 + MIR SINE MIR 14 191 -71 239 283 201 0 chr6 14961330 14961489 -167453753 + MIR SINE MIR 64 254 -8 2214 121 84 53 chr6 14961756 14962171 -167453071 - MSTA LTR MaLR 0 428 1 542 92 0 11 chr6 14962173 14962260 -167452982 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 2168 111 10 3 chr6 14964254 14964551 -167450691 - AluSx SINE Alu -13 299 1 2373 142 21 8 chr6 14964818 14965198 -167450044 - MER57A LTR ERV1 -18 385 1 2285 107 3 0 chr6 14965418 14965718 -167449524 + AluSx SINE Alu 1 301 -11 519 200 20 0 chr6 14965736 14965836 -167449406 + MIR3 SINE MIR 53 154 -54 4714 153 63 39 chr6 14966787 14967679 -167447563 - MER21A LTR ERV1 0 931 19 357 297 100 75 chr6 14967741 14967808 -167447434 - L3 LINE CR1 -1 1576 1512 601 174 92 76 chr6 14967808 14967872 -167447370 + MER5A DNA MER1_type 1 62 -127 2318 94 0 3 chr6 14967872 14968169 -167447073 + AluSg SINE Alu 15 310 0 601 174 92 76 chr6 14968169 14968288 -167446954 + MER5A DNA MER1_type 62 187 -2 357 297 100 75 chr6 14968288 14968459 -167446783 - L3 LINE CR1 -65 1512 1332 312 91 0 0 chr6 14969146 14969190 -167446052 + (GGA)n Simple_repeat Simple_repeat 1 44 0 216 254 232 43 chr6 14970567 14970705 -167444537 + MIR SINE MIR 20 183 -79 26 0 0 0 chr6 14970785 14970811 -167444431 + AT_rich Low_complexity Low_complexity 1 26 0 456 295 73 33 chr6 14971342 14971671 -167443571 + L1MCa LINE L1 1252 1593 -4833 * 586 286 79 10 chr6 14971668 14971958 -167443284 + L1MCa LINE L1 2801 3110 -3316 3014 279 76 48 chr6 14972106 14974547 -167440695 + L1MCa LINE L1 3408 5919 -531 975 207 38 114 chr6 14974700 14974954 -167440288 - MER39 LTR ERV1 -83 624 409 2527 93 0 0 chr6 14974954 14975267 -167439975 + AluSp SINE Alu 1 313 0 975 207 38 114 chr6 14975267 14975408 -167439834 - MER39 LTR ERV1 -298 409 259 852 260 73 74 chr6 14975911 14976388 -167438854 - MLT1L LTR MaLR 0 615 73 2091 110 32 0 chr6 14977861 14978143 -167437099 + AluSq SINE Alu 1 291 -22 466 138 11 23 chr6 14978166 14978253 -167436989 - L1MB8 LINE L1 0 6178 6093 551 218 21 21 chr6 14978265 14978407 -167436835 - L1MB4 LINE L1 -1 6179 6038 733 165 33 0 chr6 14978503 14978624 -167436618 + FLAM_C SINE Alu 2 126 -7 252 250 56 0 chr6 14978635 14978707 -167436535 - MER91A DNA MER1_type -92 104 29 1359 229 75 48 chr6 14979094 14979549 -167435693 - MLT1C LTR MaLR 0 467 1 29 0 0 0 chr6 14980316 14980345 -167434897 + AT_rich Low_complexity Low_complexity 1 29 0 549 228 85 76 chr6 14980960 14981171 -167434071 - MIR SINE MIR -3 259 47 180 0 0 0 chr6 14981673 14981693 -167433549 + (T)n Simple_repeat Simple_repeat 1 20 0 2314 159 62 154 chr6 14982163 14982960 -167432282 + LTR8A LTR ERV1 1 723 -4 205 314 71 0 chr6 14983258 14983328 -167431914 + L2 LINE L2 3146 3220 -52 1304 202 88 62 chr6 14984404 14984824 -167430418 - MER31B LTR ERV1 -29 437 7 249 219 27 55 chr6 14985051 14985124 -167430118 - L2 LINE L2 0 3313 3243 1079 265 98 14 chr6 14986189 14986627 -167428615 - LTR16C LTR ERVL 0 491 17 707 169 7 0 chr6 14987153 14987301 -167427941 + CT-rich Low_complexity Low_complexity 2 150 0 859 254 157 34 chr6 14987707 14988395 -167426847 + L2 LINE L2 2542 3309 -4 186 265 0 0 chr6 14988756 14988824 -167426418 + GA-rich Low_complexity Low_complexity 4 71 0 212 141 28 70 chr6 14989438 14989451 -167425791 + A-rich Low_complexity Low_complexity 3 15 -55 2086 121 6 16 chr6 14989451 14989766 -167425476 + AluSx SINE Alu 1 312 0 212 141 28 70 chr6 14989766 14989823 -167425419 + A-rich Low_complexity Low_complexity 15 70 0 1649 168 43 45 chr6 14990367 14990742 -167424500 - MLT1A2 LTR MaLR 0 374 1 282 317 135 0 chr6 14991896 14992000 -167423242 + MIR3 SINE MIR 64 181 -27 189 0 0 0 chr6 14993571 14993592 -167421650 + (CA)n Simple_repeat Simple_repeat 2 22 0 405 0 0 0 chr6 14993892 14993937 -167421305 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 302 211 28 14 chr6 14994483 14994554 -167420688 + GA-rich Low_complexity Low_complexity 3 74 0 258 32 0 0 chr6 14994620 14994651 -167420591 + (TG)n Simple_repeat Simple_repeat 2 32 0 291 309 36 18 chr6 14994713 14994823 -167420419 + MER91A DNA MER1_type 60 171 -25 831 168 70 0 chr6 14995026 14995169 -167420073 + FRAM SINE Alu 8 160 -16 1165 213 67 59 chr6 14997163 14997534 -167417708 - MER21B LTR ERV1 -109 754 381 563 315 18 22 chr6 14997731 14997953 -167417289 - MER21B LTR ERV1 -483 380 160 * 712 274 28 30 chr6 14997936 14998243 -167416999 - MER21B LTR ERV1 -400 205 49 714 245 147 64 chr6 14998300 14998736 -167416506 + MLT1H LTR MaLR 78 549 0 321 277 118 73 chr6 14999150 14999464 -167415778 - MLT1J1 LTR MaLR -26 420 93 3031 61 3 13 chr6 14999575 14999966 -167415276 + L1PA6 LINE L1 5767 6153 -1 267 217 17 0 chr6 15001023 15001083 -167414159 + GA-rich Low_complexity Low_complexity 3 63 0 21 0 0 0 chr6 15001649 15001670 -167413572 + AT_rich Low_complexity Low_complexity 1 21 0 570 235 122 20 chr6 15002339 15002535 -167412707 + LTR33 LTR ERVL 1 216 -305 294 276 51 32 chr6 15002542 15002698 -167412544 + LTR33 LTR ERVL 363 521 0 2277 88 7 7 chr6 15002734 15003029 -167412213 - AluSg SINE Alu -15 295 1 398 264 66 8 chr6 15003030 15003151 -167412091 - MIR SINE MIR -19 243 116 276 77 0 0 chr6 15004144 15004183 -167411059 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 303 85 0 0 chr6 15004190 15004237 -167411005 + (CA)n Simple_repeat Simple_repeat 1 47 0 212 381 0 0 chr6 15004269 15004353 -167410889 + L2 LINE L2 3186 3269 -3 1852 145 16 3 chr6 15004933 15005237 -167410005 - L1M1 LINE L1 -6168 1397 1090 234 128 0 0 chr6 15006364 15006403 -167408839 + (CA)n Simple_repeat Simple_repeat 2 40 0 2230 116 0 0 chr6 15006788 15007082 -167408160 - AluSg SINE Alu -16 294 1 907 147 0 14 chr6 15007083 15007226 -167408016 - L1MC1 LINE L1 -9 6324 6184 3665 51 0 2 chr6 15007228 15007677 -167407565 - LTR7 LTR ERV1 -2 448 1 2611 74 45 13 chr6 15007677 15008057 -167407185 - HERVH LTR ERV1 0 7713 7322 1427 115 23 9 chr6 15008055 15008272 -167406970 - HERVH LTR ERV1 -1894 5819 5600 * 4493 136 1 1 chr6 15008273 15008935 -167406307 - HERVH LTR ERV1 -2564 5149 4488 3384 116 6 6 chr6 15008937 15009439 -167405803 - HERVH LTR ERV1 -3720 3993 3492 * 20978 80 61 43 chr6 15009429 15012662 -167402580 - HERVH LTR ERV1 -4423 3290 1 3707 40 7 2 chr6 15012662 15013110 -167402132 - LTR7 LTR ERV1 0 450 1 5850 156 21 4 chr6 15013110 15014296 -167400946 - L1MC1 LINE L1 -145 6188 4976 337 194 47 70 chr6 15014280 15014409 -167400833 - L1MC5 LINE L1 -30 7931 7806 * 246 315 139 9 chr6 15014913 15015021 -167400221 - MIR3 SINE MIR -6 202 81 2741 132 29 0 chr6 15018152 15018568 -167396674 + MSTA LTR MaLR 1 428 0 210 254 0 56 chr6 15019076 15019147 -167396095 + L2 LINE L2 3243 3309 -4 209 333 82 22 chr6 15019243 15019426 -167395816 + MIR3 SINE MIR 5 198 -10 356 292 0 8 chr6 15020844 15020964 -167394278 + L2 LINE L2 3193 3311 -2 507 212 62 62 chr6 15022200 15022393 -167392849 - MLT1K LTR MaLR 0 588 396 427 327 22 63 chr6 15022468 15022737 -167392505 - MLT1K LTR MaLR -329 259 2 203 329 12 0 chr6 15024035 15024120 -167391122 - MIR SINE MIR -112 150 65 346 267 69 9 chr6 15024195 15024256 -167390986 - L2 LINE L2 0 3313 3257 441 0 0 0 chr6 15024256 15024305 -167390937 + (TA)n Simple_repeat Simple_repeat 1 49 0 346 267 69 9 chr6 15024305 15024359 -167390883 - L2 LINE L2 -56 3257 3191 1125 104 129 64 chr6 15124680 15124882 -167290360 + AluSg/x SINE Alu 81 295 -15 2512 75 0 0 chr6 15124937 15125243 -167289999 + AluY SINE Alu 1 306 -5 1931 133 0 68 chr6 15125419 15125743 -167289499 + AluSx SINE Alu 1 302 -10 276 250 135 7 chr6 15125873 15126012 -167289230 - L1ME LINE L1 -523 5641 5486 195 231 0 19 chr6 15126474 15126526 -167288716 + MIR SINE MIR 211 261 -1 2217 124 0 0 chr6 15127262 15127561 -167287681 - AluSx SINE Alu -13 299 1 330 296 122 57 chr6 15128472 15128557 -167286685 - L1ME LINE L1 -471 5699 5621 387 0 0 0 chr6 15128557 15128600 -167286642 + (TG)n Simple_repeat Simple_repeat 2 44 0 1634 161 44 18 chr6 15128600 15128874 -167286368 - AluSx SINE Alu -28 284 4 330 296 122 57 chr6 15128874 15129155 -167286087 - L1ME LINE L1 -548 5622 5290 317 149 35 11 chr6 15129165 15129252 -167285990 + CT-rich Low_complexity Low_complexity 2 90 0 2180 81 15 0 chr6 15129263 15129535 -167285707 - AluSp SINE Alu -37 276 1 2551 65 0 0 chr6 15129606 15129912 -167285330 - AluY SINE Alu -5 306 1 2274 93 0 7 chr6 15129976 15130276 -167284966 - AluY SINE Alu -13 298 1 324 264 83 67 chr6 15130285 15130340 -167284902 - L1ME LINE L1 -896 5250 5197 2399 89 0 7 chr6 15130340 15130643 -167284599 - AluY SINE Alu -10 301 1 324 264 83 67 chr6 15130643 15130780 -167284462 - L1ME LINE L1 -949 5197 5055 2071 91 87 0 chr6 15131148 15131423 -167283819 - AluSq SINE Alu -14 299 1 2352 82 0 44 chr6 15131743 15132061 -167283181 - AluSq SINE Alu -9 304 1 320 149 45 0 chr6 15132678 15132745 -167282497 - AluS SINE Alu 0 302 233 2229 114 3 0 chr6 15132889 15133186 -167282056 - AluSg SINE Alu -12 298 1 834 58 0 0 chr6 15133215 15133318 -167281924 + AluY SINE Alu 1 103 -208 2016 58 0 8 chr6 15133418 15133661 -167281581 + AluY SINE Alu 54 294 -17 1163 87 5 65 chr6 15133742 15133954 -167281288 + AluSp SINE Alu 123 323 0 1232 251 72 19 chr6 15134011 15134425 -167280817 - Charlie4a DNA MER1_type -34 474 39 255 271 65 19 chr6 15134669 15134776 -167280466 + L2 LINE L2 3155 3266 -6 1860 180 79 27 chr6 15134893 15135298 -167279944 - MSTA LTR MaLR -2 426 1 869 96 26 0 chr6 15136199 15136314 -167278928 - FLAM_C SINE Alu -25 118 1 2018 127 38 0 chr6 15136358 15136649 -167278593 + AluSx SINE Alu 1 302 -10 477 220 232 6 chr6 15136789 15136957 -167278285 - L1ME2 LINE L1 -9 6155 5950 1343 205 128 0 chr6 15136968 15137319 -167277923 - L1ME2 LINE L1 -289 5875 5480 2191 92 0 7 chr6 15137421 15137703 -167277539 - AluY SINE Alu -31 280 1 1541 182 7 18 chr6 15137755 15138030 -167277212 + AluJo SINE Alu 24 295 -17 2340 48 21 17 chr6 15138814 15139103 -167276139 - AluY SINE Alu -21 290 1 328 301 0 0 chr6 15139230 15139333 -167275909 - L1ME LINE L1 -460 5661 5559 1432 207 7 20 chr6 15139454 15139754 -167275488 - AluSx SINE Alu -16 296 1 1107 138 0 18 chr6 15140047 15140214 -167275028 + AluY SINE Alu 132 295 -16 2152 97 3 17 chr6 15140975 15141265 -167273977 - AluSc SINE Alu -15 294 9 2594 65 0 0 chr6 15141894 15142202 -167273040 - AluY SINE Alu 0 311 4 1946 143 4 0 chr6 15142442 15142744 -167272498 - AluSg SINE Alu 0 304 2 567 194 21 35 chr6 15143324 15143468 -167271774 - L1MC4 LINE L1 -115 7927 7786 458 244 8 0 chr6 15143482 15143601 -167271641 - L1MC4 LINE L1 -1073 6969 6850 24 0 0 0 chr6 15143922 15143946 -167271296 + AT_rich Low_complexity Low_complexity 1 24 0 1980 95 51 4 chr6 15143946 15144219 -167271023 - AluSg1 SINE Alu -23 286 1 836 151 0 8 chr6 15144300 15144426 -167270816 - FLAM_C SINE Alu -18 125 1 2273 98 20 0 chr6 15145190 15145485 -167269757 + AluSx SINE Alu 4 304 -8 432 0 0 0 chr6 15147467 15147515 -167267727 + (TG)n Simple_repeat Simple_repeat 1 48 0 210 37 0 0 chr6 15147514 15147541 -167267701 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 2317 92 3 0 chr6 15148917 15149211 -167266031 + AluSx SINE Alu 1 295 -17 2077 110 41 3 chr6 15149515 15149807 -167265435 - AluSx SINE Alu -9 303 1 346 256 171 23 chr6 15150035 15150164 -167265078 - MER5A DNA MER1_type -8 181 34 539 237 79 13 chr6 15150757 15150909 -167264333 + MIR SINE MIR 79 240 -22 2525 67 3 13 chr6 15153108 15153420 -167261822 - AluSq SINE Alu -4 309 1 189 58 29 72 chr6 15153654 15153723 -167261519 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 1997 128 3 10 chr6 15153742 15154038 -167261204 + AluSg SINE Alu 1 294 -16 1422 144 53 4 chr6 15154045 15154288 -167260954 - AluSq SINE Alu -45 268 14 294 201 206 49 chr6 15156405 15156589 -167258653 + L1ME4a LINE L1 5754 5966 -155 220 286 0 0 chr6 15156589 15156638 -167258604 + (TATG)n Simple_repeat Simple_repeat 1 49 0 197 247 165 21 chr6 15156925 15157022 -167258220 - L2 LINE L2 -467 2847 2737 2367 88 3 3 chr6 15158232 15158537 -167256705 + AluSp SINE Alu 1 305 -8 2178 99 0 0 chr6 15159005 15159288 -167255954 - AluSg1 SINE Alu -26 283 1 280 232 106 53 chr6 15159298 15159317 -167255925 - L1MA10 LINE L1 -2 6332 6314 780 231 169 13 chr6 15159317 15159624 -167255618 - L1ME2 LINE L1 -9 6155 5801 180 289 60 48 chr6 15161024 15161107 -167254135 - MIR SINE MIR -145 117 34 289 211 80 164 chr6 15161179 15161392 -167253850 + L2 LINE L2 3119 3313 0 779 131 0 0 chr6 15161854 15161961 -167253281 + U6 snRNA snRNA 1 107 0 1390 126 190 16 chr6 15163062 15163309 -167251933 - AluSx SINE Alu -22 290 1 1549 128 124 8 chr6 15163479 15163736 -167251506 - AluSg1 SINE Alu -22 287 1 647 185 123 19 chr6 15163778 15163940 -167251302 + MIR SINE MIR 15 193 -69 1016 129 0 7 chr6 15165003 15165158 -167250084 + AluSq SINE Alu 142 295 -18 1459 152 72 45 chr6 15166329 15166619 -167248623 - AluSx SINE Alu -14 298 1 351 0 0 0 chr6 15167789 15167828 -167247414 + (TG)n Simple_repeat Simple_repeat 2 40 0 2137 104 23 3 chr6 15168728 15169027 -167246215 - AluSg SINE Alu -5 305 1 235 189 0 0 chr6 15169256 15169293 -167245949 + Alu SINE Alu 137 173 -129 263 233 163 39 chr6 15169403 15169532 -167245710 + MIR SINE MIR 71 215 -47 478 186 0 0 chr6 15170466 15170552 -167244690 - MLT1B LTR MaLR -304 86 1 1477 142 142 0 chr6 15170590 15170843 -167244399 + AluSg SINE Alu 5 293 -17 2482 61 10 13 chr6 15170843 15171153 -167244089 + AluY SINE Alu 1 309 -2 330 262 148 0 chr6 15171161 15171283 -167243959 - L1M4 LINE L1 -984 5162 5023 598 184 39 0 chr6 15171312 15171415 -167243827 - U6 snRNA snRNA 0 107 1 1147 191 89 68 chr6 15171435 15171728 -167243514 - AluJo SINE Alu 0 302 4 1588 217 99 14 chr6 15172621 15173054 -167242188 + Charlie1b DNA MER1_type 1 470 -53 249 240 219 0 chr6 15173066 15173162 -167242080 - L1MC5 LINE L1 -91 7870 7754 1185 195 61 12 chr6 15173187 15173433 -167241809 - AluJo SINE Alu -54 258 1 1698 186 3 0 chr6 15173447 15173742 -167241500 - AluSx SINE Alu -15 297 2 492 163 0 0 chr6 15174186 15174266 -167240976 - AluJ/FRAM SINE Alu -12 300 221 333 118 0 0 chr6 15174471 15174522 -167240720 + (TG)n Simple_repeat Simple_repeat 1 51 0 231 225 38 75 chr6 15175245 15175325 -167239917 - MIR SINE MIR -13 249 173 233 290 30 53 chr6 15175354 15175485 -167239757 + MIR SINE MIR 95 222 -40 1765 182 19 10 chr6 15177999 15178307 -167236935 + AluJb SINE Alu 1 311 -1 494 171 19 38 chr6 15178413 15178518 -167236724 + L1MC2 LINE L1 6060 6162 -182 1754 86 189 0 chr6 15178526 15178770 -167236472 + AluSp SINE Alu 1 290 -13 369 161 195 0 chr6 15178781 15178868 -167236374 + Tigger7 DNA MER2_type 9 112 -2375 1491 158 62 121 chr6 15179802 15179873 -167235369 - L1MB7 LINE L1 0 6184 6110 2410 50 33 3 chr6 15179873 15180173 -167235069 - AluY SINE Alu -1 310 2 1491 158 62 121 chr6 15180173 15180499 -167234743 - L1MB7 LINE L1 -74 6110 5815 785 158 0 8 chr6 15180499 15180632 -167234610 - L1MB4 LINE L1 -6 6174 6043 1491 158 62 121 chr6 15180632 15180688 -167234554 - L1MB7 LINE L1 -369 5815 5757 1997 141 6 10 chr6 15182029 15182342 -167232900 - AluSx SINE Alu 0 312 1 1334 186 61 11 chr6 15182758 15183022 -167232220 + AluJo SINE Alu 6 282 -30 348 83 0 0 chr6 15183028 15183076 -167232166 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 680 137 23 61 chr6 15183650 15183781 -167231461 - FLAM_C SINE Alu -8 135 10 253 132 0 0 chr6 15183956 15183994 -167231248 - LTR1 LTR ERV1 0 785 748 13319 153 41 33 chr6 15184108 15186481 -167228761 + HUERS-P2 LTR ERV1 208 2679 -409 2260 91 10 0 chr6 15186481 15186777 -167228465 - AluSp SINE Alu -14 299 1 13319 153 41 33 chr6 15186777 15186907 -167228335 + HUERS-P2 LTR ERV1 2679 2806 -282 1084 167 0 0 chr6 15186908 15187082 -167228160 - AluSg/x SINE Alu -18 294 121 199 192 0 25 chr6 15187216 15187262 -167227980 - MIR SINE MIR -63 145 105 1962 111 12 71 chr6 15189868 15190193 -167225049 + AluSq SINE Alu 1 306 -7 243 0 0 0 chr6 15191047 15191074 -167224168 + (T)n Simple_repeat Simple_repeat 1 27 0 324 182 83 58 chr6 15191420 15191541 -167223701 - L1MB8 LINE L1 -9 6169 6046 21 0 0 0 chr6 15191781 15191802 -167223440 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 15192518 15192551 -167222691 + AT_rich Low_complexity Low_complexity 1 33 0 269 246 0 16 chr6 15192823 15192884 -167222358 + MIR SINE MIR 43 102 -160 2064 124 7 0 chr6 15193683 15193973 -167221269 - AluSg SINE Alu -14 296 5 1170 163 54 128 chr6 15194670 15194983 -167220259 - AluJb SINE Alu -11 291 2 25 53 0 18 chr6 15194998 15195027 -167220215 + AT_rich Low_complexity Low_complexity 1 30 -26 2269 108 0 0 chr6 15195027 15195333 -167219909 - AluSg SINE Alu -4 306 1 25 53 0 18 chr6 15195333 15195360 -167219882 + AT_rich Low_complexity Low_complexity 30 56 0 25 0 0 0 chr6 15195409 15195434 -167219808 + AT_rich Low_complexity Low_complexity 1 25 0 825 276 112 43 chr6 15197505 15197951 -167217291 + HsTC2 DNA Tc2 105 581 -1317 258 219 173 26 chr6 15198375 15198489 -167216753 + MIR SINE MIR 20 150 -58 1887 198 52 20 chr6 15199820 15200279 -167214963 - L1MB8 LINE L1 -344 5834 5361 1502 204 96 18 chr6 15201015 15201411 -167213831 + MLT1D LTR MaLR 79 505 0 238 181 179 14 chr6 15201542 15201629 -167213613 - MIR SINE MIR -71 137 38 183 100 50 50 chr6 15201807 15201847 -167213395 - L2 LINE L2 -218 3054 3015 180 0 0 0 chr6 15202158 15202178 -167213064 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 1583 202 84 46 chr6 15202469 15202562 -167212680 - L1MB5 LINE L1 -17 6157 6069 1951 147 3 0 chr6 15202562 15202855 -167212387 - AluSx SINE Alu -18 294 1 1583 202 84 46 chr6 15202855 15203290 -167211952 - L1MB5 LINE L1 -105 6069 5577 942 253 169 27 chr6 15202877 15203402 -167211840 - L1MC4 LINE L1 -1993 6049 5450 * 2113 133 10 0 chr6 15203677 15203985 -167211257 + AluSx SINE Alu 1 311 -1 1615 166 95 0 chr6 15206648 15206931 -167208311 - AluSq SINE Alu -3 310 1 31 58 0 0 chr6 15207085 15207137 -167208105 + AT_rich Low_complexity Low_complexity 1 52 0 1958 124 14 21 chr6 15207137 15207427 -167207815 - AluSg SINE Alu -22 288 1 1363 197 3 72 chr6 15207429 15207749 -167207493 - AluJo SINE Alu -14 298 1 559 274 181 0 chr6 15208049 15208341 -167206901 + L2 LINE L2 2429 2773 -541 1748 156 44 3 chr6 15208837 15209132 -167206110 - AluSx SINE Alu -5 307 1 271 192 19 0 chr6 15210212 15210264 -167204978 + MER5A DNA MER1_type 1 53 -136 183 250 0 0 chr6 15210293 15210341 -167204901 + MER5A DNA MER1_type 132 179 -10 743 224 87 20 chr6 15211716 15211912 -167203330 + MER3 DNA MER1_type 1 209 0 404 221 147 32 chr6 15213664 15213854 -167201388 - MER5C DNA MER1_type -36 288 77 198 0 0 0 chr6 15217926 15217948 -167197294 + (A)n Simple_repeat Simple_repeat 1 22 0 1756 83 46 12 chr6 15220645 15220918 -167194324 + AluSq SINE Alu 44 313 0 2129 123 0 10 chr6 15223635 15223937 -167191305 - AluSx SINE Alu -13 299 1 881 74 0 0 chr6 15224863 15224971 -167190271 - AluSc SINE Alu -12 297 190 313 218 20 59 chr6 15225019 15225120 -167190122 + MER34 LTR ERV1 432 528 -14 3732 134 96 23 chr6 15226026 15226758 -167188484 + LTR1 LTR ERV1 1 785 0 28 0 0 0 chr6 15226946 15226974 -167188268 + AT_rich Low_complexity Low_complexity 1 28 0 258 364 130 5 chr6 15227294 15227478 -167187764 + L1MEd LINE L1 457 663 -5456 27 0 0 0 chr6 15228517 15228544 -167186698 + AT_rich Low_complexity Low_complexity 1 27 0 450 0 0 0 chr6 15228712 15228762 -167186480 + (CA)n Simple_repeat Simple_repeat 2 51 0 369 0 0 0 chr6 15229232 15229273 -167185969 + (CA)n Simple_repeat Simple_repeat 2 42 0 967 212 0 11 chr6 15229592 15229781 -167185461 + MER5A DNA MER1_type 3 189 0 457 101 157 22 chr6 15229921 15230010 -167185232 + MER51A LTR ERV1 5 105 -529 1307 83 47 156 chr6 15230066 15230202 -167185040 + MER51A LTR ERV1 389 538 -96 291 28 0 0 chr6 15230202 15230238 -167185004 + (TTG)n Simple_repeat Simple_repeat 1 36 0 1307 83 47 156 chr6 15230238 15230260 -167184982 + MER51A LTR ERV1 538 561 -73 1775 155 14 4 chr6 15230260 15230537 -167184705 - AluSx SINE Alu -32 280 1 1307 83 47 156 chr6 15230537 15230653 -167184589 + MER51A LTR ERV1 561 634 0 1572 184 7 32 chr6 15233119 15233429 -167181813 + AluJo SINE Alu 5 306 -6 2146 134 0 0 chr6 15233753 15234059 -167181183 - AluSx SINE Alu -5 307 2 2669 49 0 6 chr6 15234080 15234407 -167180835 + L1PA5 LINE L1 5822 6146 -8 1179 205 151 29 chr6 15236904 15237255 -167177987 - MSTD LTR MaLR -2 394 1 394 252 0 66 chr6 15237635 15237786 -167177456 + MIR SINE MIR 112 252 -10 2198 98 0 3 chr6 15237793 15238108 -167177134 - AluSp SINE Alu 0 314 1 822 165 0 0 chr6 15238416 15238549 -167176693 + FLAM_C SINE Alu 1 133 0 1725 167 10 19 chr6 15239386 15239698 -167175544 + AluJb SINE Alu 1 309 -3 2177 282 167 27 chr6 15241356 15242267 -167172975 + L1MEc LINE L1 11 793 -5603 2232 83 11 0 chr6 15242267 15242544 -167172698 - AluSg SINE Alu -13 297 18 2177 282 167 27 chr6 15242544 15243059 -167172183 + L1MEc LINE L1 793 1637 -4759 303 207 117 69 chr6 15243081 15243226 -167172016 + L1MEc LINE L1 1599 1750 -4646 2069 94 20 10 chr6 15244169 15244467 -167170775 + AluSc SINE Alu 1 301 -8 1577 186 7 20 chr6 15244933 15245228 -167170014 - AluJb SINE Alu -21 291 1 350 260 29 0 chr6 15245252 15245356 -167169886 - MIR SINE MIR -65 197 91 5919 62 22 66 chr6 15245941 15246847 -167168395 + SVA Other Other 1 866 -520 6343 78 9 60 chr6 15247039 15248047 -167167195 + SVA Other Other 430 1385 -1 21 82 0 0 chr6 15248048 15248097 -167167145 + AT_rich Low_complexity Low_complexity 1 49 0 970 142 13 7 chr6 15248919 15249074 -167166168 + MSTD LTR MaLR 4 159 -237 810 196 5 73 chr6 15249074 15249278 -167165964 + AluJo SINE Alu 123 312 0 698 236 46 6 chr6 15249288 15249462 -167165780 + MSTD LTR MaLR 216 396 0 2294 89 23 0 chr6 15249550 15249853 -167165389 + AluSp SINE Alu 2 311 -2 1844 152 22 4 chr6 15250260 15250536 -167164706 + AluSx SINE Alu 2 282 -30 285 344 39 0 chr6 15252318 15252446 -167162796 + Charlie8 DNA MER1_type 77 209 -2208 226 253 61 30 chr6 15253020 15253119 -167162123 + MARNA DNA Mariner 157 258 -328 592 233 196 19 chr6 15254066 15254337 -167160905 + MER33 DNA MER1_type 5 323 -1 1839 157 42 0 chr6 15254592 15254879 -167160363 - AluJo SINE Alu -13 299 1 181 242 227 0 chr6 15254964 15255030 -167160212 - L2 LINE L2 -4 3268 3188 228 186 0 66 chr6 15255470 15255573 -167159669 - MER5A DNA MER1_type -1 188 20 1333 174 32 36 chr6 15255602 15255883 -167159359 - AluJo SINE Alu -32 280 1 2138 114 0 0 chr6 15256426 15256707 -167158535 - AluSc SINE Alu -28 281 1 486 0 0 0 chr6 15258287 15258341 -167156901 + (TG)n Simple_repeat Simple_repeat 1 54 0 198 0 0 0 chr6 15260940 15260962 -167154280 + (A)n Simple_repeat Simple_repeat 1 22 0 226 239 0 0 chr6 15261930 15261976 -167153266 + GA-rich Low_complexity Low_complexity 2 47 0 223 237 34 0 chr6 15263141 15263200 -167152042 - MIR SINE MIR -45 217 157 204 214 0 0 chr6 15263320 15263376 -167151866 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 292 303 10 10 chr6 15263447 15263546 -167151696 - MIR3 SINE MIR -34 174 76 428 273 48 94 chr6 15264805 15265179 -167150063 - L1ME3A LINE L1 -282 5888 5532 828 213 63 6 chr6 15266059 15266233 -167149009 + Tigger7 DNA MER2_type 3 186 -2301 616 184 0 9 chr6 15266248 15266362 -167148880 + Tigger7 DNA MER2_type 2379 2491 0 21 0 0 0 chr6 15266373 15266394 -167148848 + AT_rich Low_complexity Low_complexity 1 21 0 218 233 0 0 chr6 15266490 15266533 -167148709 + MIR SINE MIR 116 158 -104 1797 124 4 4 chr6 15266908 15267166 -167148076 + AluSc SINE Alu 9 266 -43 979 109 0 0 chr6 15267167 15267295 -167147947 + AluSp SINE Alu 5 132 -181 1550 124 120 8 chr6 15267298 15267548 -167147694 + AluY SINE Alu 1 278 -33 229 286 48 0 chr6 15267649 15267712 -167147530 + L1ME LINE L1 5519 5584 -537 183 286 117 0 chr6 15268073 15268150 -167147092 + L2 LINE L2 2924 3009 -263 1316 186 68 21 chr6 15268250 15268530 -167146712 - AluJb SINE Alu -16 296 4 259 194 56 14 chr6 15269110 15269182 -167146060 - L1ME4a LINE L1 -83 6038 5964 631 241 31 42 chr6 15269809 15269878 -167145364 - MER3 DNA MER1_type -16 193 125 2111 122 3 10 chr6 15269878 15270182 -167145060 + AluSq SINE Alu 1 302 -11 631 241 31 42 chr6 15270182 15270303 -167144939 - MER3 DNA MER1_type -84 125 5 764 285 29 21 chr6 15270927 15271169 -167144073 + MIR SINE MIR 15 258 -4 214 309 116 44 chr6 15271247 15271428 -167143814 + L2 LINE L2 3120 3313 0 203 337 131 34 chr6 15271552 15271727 -167143515 - L3b LINE CR1 -141 1442 1251 183 42 0 0 chr6 15273048 15273072 -167142170 + (CAT)n Simple_repeat Simple_repeat 1 24 0 397 127 25 13 chr6 15274510 15274589 -167140653 + GA-rich Low_complexity Low_complexity 2 81 0 588 122 0 0 chr6 15274603 15274685 -167140557 + AluS SINE Alu 5 86 -226 180 0 0 0 chr6 15274685 15274705 -167140537 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 678 168 0 26 chr6 15277420 15277533 -167137709 - AluY SINE Alu -16 295 186 213 333 30 0 chr6 15278198 15278297 -167136945 - L3 LINE CR1 -166 1411 1310 297 289 24 12 chr6 15279577 15279660 -167135582 + L3 LINE CR1 1127 1210 -367 334 261 231 0 chr6 15279868 15280002 -167135240 - MER5A DNA MER1_type 0 189 25 369 200 60 10 chr6 15281119 15281219 -167134023 - L2 LINE L2 -4 3268 3164 2278 61 16 39 chr6 15281332 15281642 -167133600 - AluY SINE Alu -8 303 1 1949 114 21 11 chr6 15283374 15283655 -167131587 - AluSg SINE Alu -26 284 1 2097 136 3 0 chr6 15283699 15284008 -167131234 - AluSg SINE Alu 0 310 1 1724 164 0 27 chr6 15287440 15287732 -167127510 + AluJo SINE Alu 6 289 -23 254 290 14 0 chr6 15287948 15288017 -167127225 + (TG)n Simple_repeat Simple_repeat 1 70 0 2351 89 123 0 chr6 15288147 15288463 -167126779 - THE1A LTR MaLR 0 355 1 939 132 0 0 chr6 15288501 15288630 -167126612 - AluSg SINE Alu -46 266 138 264 132 0 118 chr6 15288630 15288698 -167126544 + AluJo SINE Alu 94 153 -149 843 132 0 0 chr6 15288702 15288823 -167126419 - AluSg SINE Alu -179 131 11 2164 109 3 13 chr6 15288876 15289188 -167126054 - AluSc SINE Alu 0 309 1 25 0 0 0 chr6 15289191 15289216 -167126026 + AT_rich Low_complexity Low_complexity 1 25 0 260 295 9 86 chr6 15289556 15289661 -167125581 - MIR SINE MIR -95 113 17 479 238 186 26 chr6 15290674 15290867 -167124375 - MIR SINE MIR -18 244 21 1994 120 3 14 chr6 15291053 15291336 -167123906 - AluSx SINE Alu -32 280 1 193 54 0 54 chr6 15292012 15292049 -167123193 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2203 48 62 24 chr6 15292073 15292365 -167122877 + AluY SINE Alu 1 303 -8 440 179 123 49 chr6 15292797 15292959 -167122283 - MER104 DNA Tc2 0 180 7 1920 112 76 0 chr6 15293003 15293280 -167121962 + AluSg SINE Alu 1 298 -12 277 266 11 32 chr6 15293557 15293651 -167121591 - MIR3 SINE MIR -7 201 110 717 217 16 0 chr6 15294170 15294299 -167120943 - FLAM_A SINE Alu -1 132 2 420 294 122 42 chr6 15294378 15294762 -167120480 + L2 LINE L2 1576 1990 -1324 2214 104 13 0 chr6 15294797 15295095 -167120147 - AluSp SINE Alu -11 302 1 1168 186 53 0 chr6 15295097 15295323 -167119919 - AluJo SINE Alu -9 303 66 289 259 43 86 chr6 15295392 15295554 -167119688 + L2 LINE L2 2323 2477 -837 1022 181 111 48 chr6 15295593 15295863 -167119379 - AluJb SINE Alu -14 298 12 348 343 97 23 chr6 15295916 15296426 -167118816 + L2 LINE L2 2562 3149 -164 36 70 0 0 chr6 15296466 15296537 -167118705 + AT_rich Low_complexity Low_complexity 1 71 0 202 291 55 36 chr6 15296538 15296648 -167118594 + L2 LINE L2 3148 3259 -54 317 319 0 14 chr6 15297138 15297252 -167117990 - MIR SINE MIR -97 111 3 240 184 0 0 chr6 15297252 15297301 -167117941 + CT-rich Low_complexity Low_complexity 6 54 0 189 74 0 0 chr6 15297306 15297333 -167117909 + (TG)n Simple_repeat Simple_repeat 2 28 0 328 202 123 97 chr6 15297488 15297623 -167117619 - FLAM_C SINE Alu 0 138 1 690 222 247 45 chr6 15298301 15298593 -167116649 - MLT1B LTR MaLR 0 390 24 231 165 24 35 chr6 15299574 15299659 -167115583 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 834 177 39 28 chr6 15300195 15300376 -167114866 - AluJb SINE Alu -45 267 85 375 23 0 0 chr6 15303041 15303085 -167112157 + (TG)n Simple_repeat Simple_repeat 2 45 0 4466 166 23 6 chr6 15303388 15304264 -167110978 + L1MA8 LINE L1 5400 6290 -1 352 277 81 20 chr6 15304362 15304510 -167110732 - MIR SINE MIR -51 211 55 30 0 0 0 chr6 15304642 15304672 -167110570 + AT_rich Low_complexity Low_complexity 1 30 0 1256 267 112 57 chr6 15304697 15305367 -167109875 - HAL1 LINE L1 -1260 1247 486 936 173 12 0 chr6 15305367 15305529 -167109713 - U1 snRNA snRNA 0 165 2 1256 267 112 57 chr6 15305529 15306010 -167109232 - HAL1 LINE L1 -2021 486 33 793 150 0 58 chr6 15306526 15306699 -167108543 + pTR5 LTR ERV1 743 905 -1533 232 271 18 22 chr6 15307096 15307285 -167107957 - L1M2 LINE L1 -857 5443 5254 3383 168 84 27 chr6 15307341 15307405 -167107837 - L1MC3 LINE L1 -1 7784 7725 2003 183 19 6 chr6 15307405 15307765 -167107477 + MLT1A1 LTR MaLR 1 365 0 3383 168 84 27 chr6 15307765 15308520 -167106722 - L1MC3 LINE L1 -60 7725 6918 478 329 118 18 chr6 15308599 15309092 -167106150 - L1M4 LINE L1 -1022 5124 4583 430 192 34 20 chr6 15309093 15309239 -167106003 + CT-rich Low_complexity Low_complexity 3 150 0 405 307 173 41 chr6 15309256 15309650 -167105592 - L1M4 LINE L1 -1587 4559 4114 1728 200 36 53 chr6 15309651 15310256 -167104986 - L1M4 LINE L1 -3269 2877 2283 433 365 50 41 chr6 15310685 15310897 -167104345 + L1MEd LINE L1 590 807 -5398 225 0 0 0 chr6 15310897 15310922 -167104320 + (CA)n Simple_repeat Simple_repeat 2 26 0 433 365 50 41 chr6 15310922 15311027 -167104215 + L1MEd LINE L1 807 910 -5295 1060 337 15 15 chr6 15311031 15311426 -167103816 - LTR16C LTR ERVL -8 483 89 39 0 0 0 chr6 15311528 15311567 -167103675 + AT_rich Low_complexity Low_complexity 1 39 0 257 254 101 42 chr6 15311672 15311889 -167103353 + L1MEd LINE L1 1463 1692 -4704 566 247 24 0 chr6 15312045 15312215 -167103027 - L1MC2 LINE L1 -3 6341 6168 205 224 0 26 chr6 15312220 15312296 -167102946 + (CATA)n Simple_repeat Simple_repeat 4 77 0 421 249 93 44 chr6 15312485 15312690 -167102552 + LTR33 LTR ERVL 1 215 -306 247 278 22 11 chr6 15312767 15312857 -167102385 + LTR33 LTR ERVL 327 417 -104 2275 77 14 0 chr6 15312908 15313195 -167102047 - AluY SINE Alu -20 291 1 1987 267 76 28 chr6 15313196 15314309 -167100933 - L1M4 LINE L1 -1407 4739 3573 909 285 155 44 chr6 15314630 15315152 -167100090 + L2 LINE L2 2738 3297 -16 253 244 0 7 chr6 15315228 15315320 -167099922 - L1ME LINE L1 -338 5826 5738 252 265 51 0 chr6 15315321 15315419 -167099823 - Charlie2a DNA MER1_type -44 2818 2716 803 166 44 0 chr6 15315424 15315605 -167099637 - Charlie2a DNA MER1_type -1196 1666 1478 225 264 55 0 chr6 15315707 15315798 -167099444 - Charlie2b DNA MER1_type -2127 655 560 2429 59 7 16 chr6 15315798 15316105 -167099137 - AluY SINE Alu -7 304 1 958 205 84 16 chr6 15316453 15316702 -167098540 + MLT1A1 LTR MaLR 100 365 0 384 317 70 7 chr6 15317096 15317238 -167098004 - LTR33 LTR ERVL -123 398 248 24 32 0 0 chr6 15317273 15317304 -167097938 + AT_rich Low_complexity Low_complexity 1 31 0 1340 308 78 68 chr6 15317551 15317799 -167097443 + L2 LINE L2 2219 2463 -850 2213 122 20 0 chr6 15317799 15318102 -167097140 - AluSx SINE Alu -3 309 1 1340 308 78 68 chr6 15318102 15318917 -167096325 + L2 LINE L2 2463 3313 0 249 247 104 26 chr6 15419458 15419535 -166995707 - MIR SINE MIR -94 114 32 2345 184 37 0 chr6 15420298 15420701 -166994541 - MER47B DNA MER2_type 0 418 1 229 355 0 0 chr6 15421371 15421447 -166993795 + L2 LINE L2 3186 3261 -11 190 308 62 77 chr6 15422661 15422791 -166992451 - L2 LINE L2 -10 3303 3176 2294 97 0 55 chr6 15423249 15423579 -166991663 - AluSx SINE Alu 0 312 1 303 259 155 17 chr6 15424665 15424781 -166990461 - L2 LINE L2 -3 3269 3138 2466 183 67 30 chr6 15425026 15425562 -166989680 + MER74A LTR ERVL 3 558 0 380 300 142 2 chr6 15427038 15427200 -166988042 - MIR SINE MIR -51 211 32 329 309 144 27 chr6 15427342 15427640 -166987602 + L1MC2 LINE L1 5265 5597 -567 1929 115 0 87 chr6 15427644 15427965 -166987277 - AluSx SINE Alu -19 293 1 424 287 39 17 chr6 15428287 15428468 -166986774 + LTR16A LTR ERVL 164 348 -102 332 239 45 60 chr6 15428534 15428668 -166986574 + Charlie7 DNA MER1_type 2478 2609 -3 2111 165 105 37 chr6 15428673 15429110 -166986132 + MLT1C LTR MaLR 1 467 0 262 290 110 25 chr6 15429129 15429329 -166985913 + L1MC2 LINE L1 5679 5895 -1913 2154 131 0 0 chr6 15429542 15429839 -166985403 + AluSg SINE Alu 1 297 -13 38 0 0 0 chr6 15429885 15429923 -166985319 + AT_rich Low_complexity Low_complexity 1 38 0 378 157 14 0 chr6 15429941 15430011 -166985231 + L1MC3 LINE L1 7524 7594 -191 976 161 75 5 chr6 15430011 15430197 -166985045 + L1MC2 LINE L1 6137 6335 -9 365 285 0 31 chr6 15430205 15430329 -166984913 - MER5A DNA MER1_type -32 146 30 285 316 114 0 chr6 15430969 15431083 -166984159 - L2 LINE L2 0 3313 3187 256 263 0 18 chr6 15432219 15432276 -166982966 - MER91A DNA MER1_type 0 196 141 243 247 82 48 chr6 15432835 15432989 -166982253 - MIR SINE MIR -62 146 27 365 309 107 37 chr6 15433262 15433505 -166981737 - MIR SINE MIR 0 262 3 386 261 115 32 chr6 15433621 15433778 -166981464 - MER112 DNA MER1_type -90 170 1 1491 223 14 28 chr6 15434589 15435001 -166980241 - MLT1A2 LTR MaLR -4 370 1 908 203 51 99 chr6 15436895 15437235 -166978007 - MLT1C LTR MaLR -1 466 168 2002 195 22 6 chr6 15437343 15437702 -166977540 - MLT1A1 LTR MaLR 0 365 1 473 213 15 66 chr6 15437988 15438124 -166977118 + MIR3 SINE MIR 15 143 -65 526 324 45 33 chr6 15439031 15439275 -166975967 - MIR SINE MIR -11 251 5 242 272 62 12 chr6 15439382 15439463 -166975779 - L2 LINE L2 -4 3268 3184 300 326 153 0 chr6 15439659 15439803 -166975439 + MIR3 SINE MIR 30 195 -13 204 40 0 0 chr6 15440307 15440332 -166974910 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 332 317 60 33 chr6 15440399 15440582 -166974660 - MIR SINE MIR -43 219 32 417 311 85 34 chr6 15440726 15440903 -166974339 - MER91A DNA MER1_type -3 193 8 7721 48 7 0 chr6 15441515 15442885 -166972357 - L1PA6 LINE L1 0 6154 4780 376 303 112 0 chr6 15442948 15443100 -166972142 - MIR SINE MIR -60 202 34 3165 164 6 8 chr6 15443209 15443733 -166971509 - LTR26B LTR ERV1 -8 523 1 201 224 0 0 chr6 15444487 15444545 -166970697 + CT-rich Low_complexity Low_complexity 1 58 0 1053 148 40 139 chr6 15444756 15445059 -166970183 + MER34B LTR ERV1 1 273 -292 1782 163 24 84 chr6 15445063 15445432 -166969810 + Tigger3(Golem) DNA MER2_type 2 3028 -1 1634 135 28 11 chr6 15445432 15445714 -166969528 + MER34B LTR ERV1 275 561 -4 280 321 155 0 chr6 15446974 15447161 -166968081 + MIR SINE MIR 47 262 0 293 342 154 7 chr6 15447173 15447322 -166967920 + L2 LINE L2 3102 3272 0 3179 149 25 39 chr6 15448299 15448716 -166966526 - MER34C LTR ERV1 -3 582 174 1614 171 12 50 chr6 15448716 15449037 -166966205 - AluJo SINE Alu -3 309 1 3179 149 25 39 chr6 15449037 15449209 -166966033 - MER34C LTR ERV1 -411 174 1 334 252 142 13 chr6 15449565 15449720 -166965522 + MIR SINE MIR 23 197 -65 1607 190 71 54 chr6 15449871 15450423 -166964819 + MER39 LTR ERV1 1 707 0 286 333 26 8 chr6 15450550 15450667 -166964575 + LTR67 LTR ERVL 432 550 -7 1404 203 61 75 chr6 15450675 15451198 -166964044 - MER39 LTR ERV1 -3 704 1 1819 153 134 0 chr6 15451352 15451659 -166963583 - MER7A DNA MER2_type 0 346 1 698 251 34 22 chr6 15452139 15452253 -166962989 + MER5A DNA MER1_type 9 127 -62 959 122 0 0 chr6 15452253 15452384 -166962858 + FLAM_C SINE Alu 2 132 -1 698 251 34 22 chr6 15452384 15452448 -166962794 + MER5A DNA MER1_type 127 189 0 183 283 50 0 chr6 15453492 15453552 -166961690 - L3 LINE CR1 -888 689 627 4362 165 45 3 chr6 15454281 15455021 -166960221 - LTR39 LTR ERV1 -12 771 1 2418 169 61 33 chr6 15455405 15455927 -166959315 - MER34C LTR ERV1 -2 583 47 1918 107 0 30 chr6 15455998 15456261 -166958981 + AluSx SINE Alu 1 255 -57 422 176 44 14 chr6 15456281 15456447 -166958795 + LTR29 LTR ERV1 1 198 -424 1434 132 128 15 chr6 15456490 15456755 -166958487 + LTR29 LTR ERV1 305 599 -23 284 357 102 39 chr6 15457155 15457460 -166957782 - L2 LINE L2 -4 3268 2945 450 305 6 58 chr6 15457855 15458029 -166957213 - L2 LINE L2 -607 2707 2543 238 293 70 32 chr6 15458117 15458262 -166956980 + MIR3 SINE MIR 15 164 -62 282 301 78 10 chr6 15458659 15458762 -166956480 + MIR3 SINE MIR 71 180 -28 593 251 70 91 chr6 15459436 15459723 -166955519 + LTR16B LTR ERVL 24 304 -160 481 250 17 0 chr6 15459725 15459845 -166955397 + MLT2C1 LTR ERVL 1 122 -275 4411 158 4 4 chr6 15459846 15460555 -166954687 - MER50 LTR ERV1 -23 711 3 1497 177 45 4 chr6 15460559 15460825 -166954417 + MLT2C1 LTR ERVL 121 397 0 2110 107 3 27 chr6 15460829 15461129 -166954113 - AluSp SINE Alu -13 300 8 530 248 7 14 chr6 15461138 15461279 -166953963 + LTR16B LTR ERVL 302 441 -23 223 314 32 48 chr6 15462118 15462242 -166953000 - L2 LINE L2 0 3313 3192 1051 238 42 34 chr6 15462687 15462728 -166952514 - MLT2D LTR ERVL 0 414 375 414 0 0 0 chr6 15462728 15462774 -166952468 + (TG)n Simple_repeat Simple_repeat 1 46 0 252 0 0 0 chr6 15462773 15462801 -166952441 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1051 238 42 34 chr6 15462774 15463024 -166952218 - MLT2D LTR ERVL -39 375 148 1786 181 89 66 chr6 15463041 15463556 -166951686 + MER34C LTR ERV1 51 577 -8 873 84 28 21 chr6 15463562 15463705 -166951537 - MLT2C2 LTR ERVL -314 150 7 1553 168 178 50 chr6 15463981 15464458 -166950784 - MER34C LTR ERV1 -2 583 46 750 292 14 52 chr6 15464486 15464852 -166950390 - L1ME4a LINE L1 -226 5895 5544 24 0 0 0 chr6 15465048 15465072 -166950170 + AT_rich Low_complexity Low_complexity 1 24 0 2119 117 70 6 chr6 15465433 15465775 -166949467 - MER34C LTR ERV1 -185 400 37 207 143 0 0 chr6 15468283 15468318 -166946924 + MIR SINE MIR 195 229 -33 981 56 14 7 chr6 15468683 15468825 -166946417 + (TTCC)n Simple_repeat Simple_repeat 3 145 0 3305 152 18 132 chr6 15469103 15469987 -166945255 - LTR39 LTR ERV1 0 783 1 476 214 141 81 chr6 15471414 15471662 -166943580 - LTR48B LTR ERV1 0 644 382 1174 66 0 7 chr6 15471680 15471831 -166943411 + AluY SINE Alu 158 307 -4 1012 169 159 53 chr6 15471882 15472202 -166943040 - MLT1A1 LTR MaLR -9 356 3 541 245 25 19 chr6 15472215 15472444 -166942798 - MER34 LTR ERV1 -371 273 1 1815 142 73 109 chr6 15472862 15472923 -166942319 - MER31B LTR ERV1 0 466 404 3694 81 28 14 chr6 15472923 15473429 -166941813 - LTR10D LTR ERV1 0 513 1 1815 142 73 109 chr6 15473429 15473846 -166941396 - MER31B LTR ERV1 -62 404 5 2295 89 7 0 chr6 15473846 15474138 -166941104 + AluY SINE Alu 1 294 -17 283 297 31 83 chr6 15474248 15474351 -166940891 - MIR3 SINE MIR -9 199 92 3738 184 49 36 chr6 15474351 15475123 -166940119 + LTR39 LTR ERV1 2 783 0 283 297 31 83 chr6 15475123 15475137 -166940105 - MIR3 SINE MIR -116 92 79 2836 180 12 108 chr6 15475137 15475305 -166939937 - LTR8 LTR ERV1 0 691 508 2301 111 0 6 chr6 15475305 15475620 -166939622 - AluSq SINE Alu 0 313 1 2836 180 12 108 chr6 15475620 15476216 -166939026 - LTR8 LTR ERV1 -183 508 1 283 297 31 83 chr6 15476216 15476289 -166938953 - MIR3 SINE MIR -129 79 18 243 256 128 53 chr6 15477533 15477666 -166937576 + MIR3 SINE MIR 11 153 -55 435 280 48 8 chr6 15478049 15478174 -166937068 + MIR SINE MIR 20 149 -113 1913 180 0 0 chr6 15478234 15478540 -166936702 - AluJo SINE Alu -4 308 3 200 313 83 0 chr6 15478962 15479058 -166936184 + MIR SINE MIR 146 249 -13 242 146 36 36 chr6 15479201 15479256 -166935986 + GA-rich Low_complexity Low_complexity 3 57 0 2249 170 113 18 chr6 15479497 15479762 -166935480 - MER101B LTR ERV1 -33 537 298 303 28 0 0 chr6 15479762 15479798 -166935444 + (TG)n Simple_repeat Simple_repeat 2 37 0 2249 170 113 18 chr6 15479798 15480021 -166935221 - MER101B LTR ERV1 -272 298 3 3060 151 80 16 chr6 15480233 15481001 -166934241 + MER21A LTR ERV1 1 931 0 301 316 79 19 chr6 15481721 15481936 -166933306 - L3b LINE CR1 -225 1358 1131 302 251 16 13 chr6 15482318 15482429 -166932813 + MIR3 SINE MIR 48 160 -48 1048 263 72 12 chr6 15484240 15484559 -166930683 - MER58B DNA MER1_type -3 338 1 209 238 90 82 chr6 15484607 15484729 -166930513 + L2 LINE L2 3150 3272 0 358 350 0 7 chr6 15485385 15485522 -166929720 - L2 LINE L2 0 3272 3137 286 325 58 0 chr6 15486402 15486522 -166928720 + MIR SINE MIR 81 207 -55 207 0 0 0 chr6 15488068 15488091 -166927151 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 204 310 39 54 chr6 15488259 15488306 -166926936 - MIR SINE MIR -99 163 117 234 0 0 0 chr6 15488306 15488332 -166926910 + (TTG)n Simple_repeat Simple_repeat 3 28 0 2334 72 0 0 chr6 15488332 15488611 -166926631 - AluY SINE Alu -32 279 1 204 310 39 54 chr6 15488611 15488691 -166926551 - MIR SINE MIR -143 119 37 1728 201 74 22 chr6 15488942 15489386 -166925856 - MLT1C LTR MaLR 0 467 1 231 239 0 0 chr6 15489641 15489687 -166925555 + L2 LINE L2 3141 3186 -86 207 0 0 0 chr6 15489889 15489912 -166925330 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 320 71 0 0 chr6 15490056 15490098 -166925144 - 5S rRNA rRNA -79 42 1 1630 174 46 3 chr6 15490237 15490519 -166924723 - AluJo SINE Alu -14 298 5 260 194 0 82 chr6 15490643 15490741 -166924501 + L1MC4 LINE L1 6614 6703 -1339 218 243 265 33 chr6 15491616 15491797 -166923445 - L2 LINE L2 -72 3241 3019 405 267 110 20 chr6 15491847 15491979 -166923263 - MIR3 SINE MIR -28 180 32 1868 100 97 7 chr6 15491979 15492248 -166922994 + AluSg SINE Alu 1 293 -17 405 267 110 20 chr6 15492248 15492261 -166922981 - MIR3 SINE MIR -176 32 22 200 64 0 106 chr6 15492612 15492659 -166922583 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 208 287 11 32 chr6 15492781 15492875 -166922367 + CT-rich Low_complexity Low_complexity 5 96 0 25 0 0 0 chr6 15493902 15493927 -166921315 + AT_rich Low_complexity Low_complexity 1 25 0 851 135 26 26 chr6 15494902 15495013 -166920229 + MER3 DNA MER1_type 9 119 -43 315 0 0 0 chr6 15495013 15495048 -166920194 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr6 15495047 15495070 -166920172 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 851 135 26 26 chr6 15495048 15495070 -166920172 + MER3 DNA MER1_type 119 140 -22 2538 81 3 0 chr6 15495070 15495380 -166919862 - AluSx SINE Alu -1 311 1 851 135 26 26 chr6 15495380 15495423 -166919819 + MER3 DNA MER1_type 139 164 -45 246 305 19 57 chr6 15495812 15495917 -166919325 + MER5A DNA MER1_type 62 167 -16 198 296 157 0 chr6 15496385 15496493 -166918749 - MIR SINE MIR -73 189 65 2335 231 33 29 chr6 15496760 15497453 -166917789 + L1MC4 LINE L1 7344 8039 -3 579 271 93 13 chr6 15497489 15497725 -166917517 - MIR SINE MIR 0 262 8 309 341 45 23 chr6 15497906 15498038 -166917204 + L2 LINE L2 3138 3272 0 336 294 186 16 chr6 15498048 15498300 -166916942 - L3 LINE CR1 -301 1276 982 2342 243 77 49 chr6 15498344 15499134 -166916108 + HAL1 LINE L1 1 812 -1695 1779 171 96 0 chr6 15499150 15499519 -166915723 - L1MB4 LINE L1 0 6180 5776 207 0 0 0 chr6 15499722 15499745 -166915497 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1699 148 25 14 chr6 15499748 15500026 -166915216 - AluSx SINE Alu -31 281 1 1013 156 6 17 chr6 15500057 15500230 -166915012 + FRAM SINE Alu 1 171 -5 281 263 79 0 chr6 15500638 15500714 -166914528 - L2 LINE L2 -1 3271 3190 1934 143 65 25 chr6 15501420 15501776 -166913466 + THE1C LTR MaLR 6 375 0 239 318 64 18 chr6 15502567 15502677 -166912565 + L2 LINE L2 3158 3272 0 192 276 41 51 chr6 15503200 15503298 -166911944 + L2 LINE L2 3189 3285 -28 1708 179 7 0 chr6 15503320 15503599 -166911643 - AluJb SINE Alu -31 281 1 996 215 106 7 chr6 15503630 15503914 -166911328 - L1M4 LINE L1 -1413 4733 4422 825 219 24 0 chr6 15503958 15504127 -166911115 + MSTD LTR MaLR 1 173 -223 354 310 42 38 chr6 15504135 15504348 -166910894 - L1M4 LINE L1 -1873 4273 4060 528 200 82 0 chr6 15504356 15504491 -166910751 - L1M4 LINE L1 -2157 3989 3844 974 188 0 0 chr6 15504492 15504652 -166910590 - AluSg/x SINE Alu -14 298 139 2886 251 21 20 chr6 15504658 15504890 -166910352 - L1M4 LINE L1 -2303 3843 3613 2145 103 0 7 chr6 15504890 15505215 -166910027 + AluSg SINE Alu 1 323 0 2886 251 21 20 chr6 15505215 15505918 -166909324 - L1M4 LINE L1 -2533 3613 2905 822 229 22 6 chr6 15506237 15506416 -166908826 - MER5A DNA MER1_type -6 183 2 732 194 8 0 chr6 15506982 15507111 -166908131 + FLAM_A SINE Alu 3 132 -1 2229 94 23 10 chr6 15508301 15508609 -166906633 + AluSx SINE Alu 1 312 0 24 0 0 0 chr6 15509679 15509703 -166905539 + AT_rich Low_complexity Low_complexity 1 24 0 3363 157 5 11 chr6 15509704 15510278 -166904964 - L1PB4 LINE L1 -2 6154 5584 360 43 0 0 chr6 15510539 15510585 -166904657 + (CA)n Simple_repeat Simple_repeat 2 47 0 192 125 0 0 chr6 15511310 15511342 -166903900 + (T)n Simple_repeat Simple_repeat 1 32 0 2139 137 0 0 chr6 15511417 15511724 -166903518 + AluSx SINE Alu 1 307 -5 1355 209 43 55 chr6 15513014 15513359 -166901883 + MER58B DNA MER1_type 1 341 0 23 86 0 0 chr6 15513495 15513553 -166901689 + AT_rich Low_complexity Low_complexity 1 58 0 2196 103 20 0 chr6 15513609 15513909 -166901333 + AluSc SINE Alu 1 306 -3 543 289 77 38 chr6 15513921 15514208 -166901034 + L1ME LINE L1 5403 5700 -462 309 258 67 8 chr6 15514220 15514340 -166900902 + MLT1I LTR MaLR 56 182 -227 248 188 188 0 chr6 15514467 15514552 -166900690 + L1M4 LINE L1 2949 3049 -3097 437 132 15 0 chr6 15514571 15514639 -166900603 - LTR16C LTR ERVL -2 489 421 2243 141 17 0 chr6 15514639 15515001 -166900241 - MLT1B LTR MaLR 0 390 23 853 287 42 48 chr6 15515071 15515405 -166899837 - LTR16C LTR ERVL -102 389 58 2380 189 43 15 chr6 15515742 15516275 -166898967 + L1MB5 LINE L1 5627 6174 0 1955 111 0 25 chr6 15516391 15516527 -166898715 + AluSx SINE Alu 1 128 -184 2069 113 20 10 chr6 15516527 15516827 -166898415 + AluSx SINE Alu 1 303 -9 1955 111 0 25 chr6 15516827 15516970 -166898272 + AluSx SINE Alu 128 273 -39 222 37 0 0 chr6 15516970 15516997 -166898245 + (TC)n Simple_repeat Simple_repeat 1 27 0 483 162 67 0 chr6 15518344 15518449 -166896793 - L1MB4 LINE L1 0 6180 6069 30947 169 34 9 chr6 15518469 15518489 -166896753 + ERVL LTR ERVL 13 31 -5733 1754 173 0 37 chr6 15518489 15518813 -166896429 + AluJb SINE Alu 1 312 0 30947 169 34 9 chr6 15518813 15519918 -166895324 + ERVL LTR ERVL 31 1106 -4658 2434 164 31 2 chr6 15519918 15520334 -166894908 + MSTB1 LTR MaLR 1 428 -4 30947 169 34 9 chr6 15520334 15524486 -166890756 + ERVL LTR ERVL 1106 5426 -338 2290 187 118 14 chr6 15524935 15525442 -166889800 - MER90 LTR ERV1 -13 562 3 1754 153 69 53 chr6 15525465 15525844 -166889398 - MLT1B LTR MaLR 0 390 6 180 0 0 0 chr6 15526627 15526647 -166888595 + (T)n Simple_repeat Simple_repeat 1 20 0 312 190 20 10 chr6 15528440 15528540 -166886702 + (TA)n Simple_repeat Simple_repeat 2 102 0 1507 160 100 21 chr6 15528806 15529137 -166886105 + MER46B DNA MER2_type 5 236 0 279 187 67 27 chr6 15529186 15529261 -166885981 + LTR48 LTR ERV1 673 750 -37 1251 176 110 33 chr6 15529902 15530203 -166885039 + MER46C DNA MER2_type 14 337 -1 1228 218 80 33 chr6 15530339 15530798 -166884444 - MER39 LTR ERV1 -6 701 1 502 292 12 6 chr6 15531199 15531367 -166883875 + MER69A DNA AcHobo 9 177 0 358 319 23 24 chr6 15531569 15531711 -166883531 - MIR SINE MIR -60 148 34 2128 161 75 47 chr6 15532272 15532530 -166882712 - MLT1C LTR MaLR -2 465 187 2154 138 0 6 chr6 15532530 15532841 -166882401 - AluSx SINE Alu -3 309 1 2128 161 75 47 chr6 15532841 15533034 -166882208 - MLT1C LTR MaLR -280 187 1 1978 202 33 3 chr6 15533049 15533416 -166881826 - MLT1C-int LTR MaLR -28 1343 966 764 217 0 12 chr6 15533417 15533583 -166881659 - MLT2C2 LTR ERVL -300 164 1 848 215 130 93 chr6 15533900 15534439 -166880803 + MER34B LTR ERV1 3 561 -4 651 152 0 0 chr6 15534551 15534663 -166880579 + (TCTA)n Simple_repeat Simple_repeat 3 114 0 191 330 33 11 chr6 15534678 15534769 -166880473 + L2 LINE L2 3180 3272 0 474 18 0 0 chr6 15534808 15534863 -166880379 + (TA)n Simple_repeat Simple_repeat 1 55 0 309 26 0 0 chr6 15534863 15534901 -166880341 + (TG)n Simple_repeat Simple_repeat 2 39 0 1470 168 80 8 chr6 15534902 15535164 -166880078 - AluJb SINE Alu -25 287 7 188 215 112 65 chr6 15536828 15536935 -166878307 - MIR SINE MIR -62 146 35 1765 161 10 24 chr6 15537694 15537985 -166877257 - AluJo SINE Alu -25 287 1 1533 187 35 74 chr6 15539719 15540125 -166875117 - MLT1B LTR MaLR 0 390 1 232 139 0 0 chr6 15540559 15540595 -166874647 + LTR16A1 LTR ERVL 422 457 0 821 275 4 26 chr6 15542772 15543005 -166872237 + MIR SINE MIR 14 241 -21 225 94 0 0 chr6 15543020 15543052 -166872190 + (TCC)n Simple_repeat Simple_repeat 2 33 0 269 348 28 7 chr6 15543069 15543210 -166872032 - MIR SINE MIR -99 163 20 2878 252 98 24 chr6 15544076 15545150 -166870092 - L1ME3A LINE L1 -5 6165 4942 1033 201 121 0 chr6 15545150 15545349 -166869893 + MER58A DNA MER1_type 1 223 -1 2878 252 98 24 chr6 15545349 15545952 -166869290 - L1ME3A LINE L1 -1228 4942 4385 2058 145 134 8 chr6 15546008 15546388 -166868854 + MSTA LTR MaLR 1 428 0 362 306 28 28 chr6 15546601 15546745 -166868497 + MIR3 SINE MIR 10 153 -55 234 216 20 0 chr6 15547498 15547549 -166867693 + MLT1J2 LTR MaLR 245 296 -154 1184 182 47 130 chr6 15547556 15547941 -166867301 - MLT1A1 LTR MaLR -12 353 1 472 317 12 30 chr6 15547941 15548105 -166867137 + MLT1J2 LTR MaLR 290 450 0 207 100 0 0 chr6 15548706 15548736 -166866506 + (T)n Simple_repeat Simple_repeat 1 30 0 362 287 33 16 chr6 15548943 15549065 -166866177 - MIR3 SINE MIR -15 193 70 2561 68 0 3 chr6 15549237 15549546 -166865696 + AluY SINE Alu 1 308 -3 213 65 0 0 chr6 15549591 15549622 -166865620 + (T)n Simple_repeat Simple_repeat 1 31 0 204 376 83 0 chr6 15549644 15549753 -166865489 - L2 LINE L2 -44 3228 3111 255 125 0 0 chr6 15549849 15549889 -166865353 + (CAG)n Simple_repeat Simple_repeat 1 40 0 328 326 20 0 chr6 15550430 15550528 -166864714 + MIR3 SINE MIR 91 190 -18 421 283 27 59 chr6 15550760 15550795 -166864447 + LTR33 LTR ERVL 22 57 -464 1472 214 65 89 chr6 15550795 15551347 -166863895 + MER34 LTR ERV1 4 542 0 421 283 27 59 chr6 15551347 15551498 -166863744 + LTR33 LTR ERVL 57 202 -319 578 279 5 30 chr6 15551553 15551750 -166863492 + LTR33 LTR ERVL 327 518 -3 534 346 75 16 chr6 15551935 15552319 -166862923 - L2 LINE L2 -356 2958 2552 2776 124 29 9 chr6 15552456 15552876 -166862366 - MSTA LTR MaLR 0 428 1 194 209 0 0 chr6 15553158 15553201 -166862041 - L2 LINE L2 -1 3312 3270 309 242 30 20 chr6 15553272 15553371 -166861871 + CT-rich Low_complexity Low_complexity 6 105 0 5516 167 12 3 chr6 15554398 15555291 -166859951 - MER54A LTR ERVL 0 901 1 2833 165 16 42 chr6 15555643 15555696 -166859546 + MER89 LTR ERV1 5 58 -501 2298 117 3 0 chr6 15555696 15555994 -166859248 + AluSp SINE Alu 1 299 -14 2833 165 16 42 chr6 15555994 15556510 -166858732 + MER89 LTR ERV1 58 559 0 2451 181 24 33 chr6 15557087 15557578 -166857664 + MER110 LTR ERV1 1 487 -4 2506 124 8 3 chr6 15558007 15558369 -166856873 + THE1B LTR MaLR 1 364 0 213 200 0 0 chr6 15558369 15558403 -166856839 + polypurine Low_complexity Low_complexity 7 40 0 207 0 0 0 chr6 15559304 15559327 -166855915 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 606 189 117 0 chr6 15559329 15559440 -166855802 - FLAM_A SINE Alu -9 124 1 217 281 122 0 chr6 15559481 15559563 -166855679 + L3 LINE CR1 1286 1377 -200 312 171 134 12 chr6 15559656 15559738 -166855504 + L1ME3A LINE L1 6079 6170 0 2388 95 0 0 chr6 15559807 15560101 -166855141 - AluSg SINE Alu -16 294 1 602 228 117 6 chr6 15561166 15561328 -166853914 - MIR SINE MIR -70 192 13 614 228 0 0 chr6 15561364 15561499 -166853743 + FLAM_A SINE Alu 3 137 0 303 335 32 32 chr6 15561549 15561707 -166853535 + HAL1 LINE L1 1109 1266 -1241 1148 173 28 14 chr6 15562076 15562290 -166852952 + MER58A DNA MER1_type 6 222 -2 272 294 42 0 chr6 15563515 15563634 -166851608 - MIR SINE MIR -98 164 41 245 360 44 0 chr6 15563717 15563831 -166851411 + L2 LINE L2 3190 3308 -5 324 201 103 121 chr6 15565279 15565453 -166849789 - MLT1H LTR MaLR -249 300 130 295 231 85 50 chr6 15565506 15565645 -166849597 - LTR45 LTR ERV1 0 783 390 45294 33 1 3 chr6 15565767 15571914 -166843328 + L1PA3 LINE L1 22 6155 0 24 0 0 0 chr6 15571914 15571938 -166843304 + AT_rich Low_complexity Low_complexity 1 24 0 7115 184 39 98 chr6 15572689 15574555 -166840687 + MER52A LTR ERV1 1 1755 0 909 165 74 0 chr6 15574701 15574877 -166840365 + MER5A DNA MER1_type 1 189 0 553 308 27 48 chr6 15575580 15575914 -166839328 + L1ME4a LINE L1 5381 5894 -227 * 3848 160 54 28 chr6 15575864 15576595 -166838647 + L1MB4 LINE L1 5381 6134 -46 2090 149 7 0 chr6 15576595 15576904 -166838338 + AluJb SINE Alu 1 311 -1 3848 160 54 28 chr6 15576904 15576936 -166838306 + L1MB4 LINE L1 6134 6164 -16 253 238 150 20 chr6 15577181 15577328 -166837914 + L1ME4a LINE L1 5944 6109 -12 477 0 0 0 chr6 15577765 15577818 -166837424 + (TG)n Simple_repeat Simple_repeat 2 54 0 3721 146 29 0 chr6 15578179 15578763 -166836479 + LTR26 LTR ERV1 1 601 -2 637 286 15 10 chr6 15578790 15578989 -166836253 + MIR SINE MIR 60 259 -3 319 260 0 0 chr6 15579459 15579536 -166835706 - L1ME3A LINE L1 -67 6103 6027 3868 263 103 28 chr6 15579551 15579705 -166835537 - L1M4 LINE L1 -1263 4883 4742 2206 116 7 0 chr6 15579705 15580015 -166835227 - AluSx SINE Alu 0 312 1 3868 263 103 28 chr6 15580015 15581645 -166833597 - L1M4 LINE L1 -1404 4742 2965 1923 145 0 7 chr6 15581646 15581936 -166833306 - AluSx SINE Alu -7 305 18 3534 242 150 22 chr6 15581963 15583286 -166831956 - L1MEc LINE L1 -4893 1503 12 216 0 0 0 chr6 15583621 15583645 -166831597 + (T)n Simple_repeat Simple_repeat 1 24 0 277 290 93 9 chr6 15583650 15583757 -166831485 - MIR SINE MIR -115 147 32 2012 97 15 4 chr6 15584051 15584319 -166830923 + AluY SINE Alu 22 292 -19 801 31 0 0 chr6 15584353 15584449 -166830793 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 21 0 0 0 chr6 15584487 15584508 -166830734 + AT_rich Low_complexity Low_complexity 1 21 0 1982 143 0 22 chr6 15584892 15585207 -166830035 - AluJo SINE Alu -4 308 1 418 215 43 0 chr6 15585248 15585341 -166829901 - MIR SINE MIR -67 141 45 1931 131 3 33 chr6 15586135 15586440 -166828802 + AluSx SINE Alu 1 296 -16 1959 176 39 53 chr6 15588235 15588702 -166826540 - MER88 LTR ERVL 0 464 5 240 35 0 0 chr6 15589207 15589236 -166826006 + (TAA)n Simple_repeat Simple_repeat 3 31 0 581 260 80 92 chr6 15589248 15589498 -166825744 - MIR SINE MIR -15 247 1 3851 111 4 93 chr6 15589562 15589628 -166825614 + MER39B LTR ERV1 1 71 -582 2100 113 31 0 chr6 15589628 15589920 -166825322 + AluSx SINE Alu 1 301 -11 3851 111 4 93 chr6 15589920 15590402 -166824840 + MER39B LTR ERV1 71 478 -175 2326 75 0 7 chr6 15590402 15590696 -166824546 + AluSc SINE Alu 1 292 -17 3851 111 4 93 chr6 15590696 15590832 -166824410 + MER39B LTR ERV1 478 625 -28 670 177 8 0 chr6 15590911 15591035 -166824207 - MIR SINE MIR -106 156 32 1080 187 35 5 chr6 15592168 15592371 -166822871 + MER3 DNA MER1_type 1 209 0 267 324 113 11 chr6 15592732 15592917 -166822325 + L2 LINE L2 2552 2755 -559 296 250 170 0 chr6 15593028 15593128 -166822114 + L2 LINE L2 3197 3313 0 1359 194 37 23 chr6 15593389 15593688 -166821554 + AluJo SINE Alu 7 309 -3 1705 167 12 86 chr6 15594412 15594831 -166820411 + MLT1B LTR MaLR 3 390 0 1936 218 102 20 chr6 15598664 15599165 -166816077 - MLT1F LTR MaLR 0 542 1 180 0 0 0 chr6 15599368 15599388 -166815854 + (A)n Simple_repeat Simple_repeat 1 20 0 683 106 0 29 chr6 15600571 15600675 -166814567 - AluSg SINE Alu -208 102 2 311 237 103 0 chr6 15600930 15601027 -166814215 + MIR SINE MIR 116 222 -40 2640 44 0 0 chr6 15605058 15605355 -166809887 - AluY SINE Alu -14 297 1 2625 181 22 52 chr6 15605416 15605652 -166809590 - MER44D DNA MER2_type -1882 605 363 1746 161 11 7 chr6 15605652 15605937 -166809305 - AluJo SINE Alu -26 286 1 2625 181 22 52 chr6 15605937 15606254 -166808988 - MER44D DNA MER2_type -2124 363 14 314 133 0 0 chr6 15606475 15606520 -166808722 - MLT2B1 LTR ERVL -61 459 415 1279 203 8 23 chr6 15606524 15606790 -166808452 - MLT2B1 LTR ERVL -258 262 1 226 365 47 7 chr6 15606832 15606980 -166808262 + MIR SINE MIR 1 154 -108 1170 180 86 23 chr6 15607372 15607628 -166807614 + MLT1B LTR MaLR 2 273 -117 1989 105 7 17 chr6 15607649 15607945 -166807297 + AluSc SINE Alu 17 309 0 2332 193 80 12 chr6 15608536 15608577 -166806665 - MLT2B1 LTR ERVL 0 520 483 222 37 0 0 chr6 15608577 15608604 -166806638 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 2332 193 80 12 chr6 15608604 15609049 -166806193 - MLT2B1 LTR ERVL -37 483 1 2896 13 0 0 chr6 15609513 15609822 -166805420 - AluYb8 SINE Alu -9 309 1 1583 147 29 111 chr6 15610816 15611196 -166804046 - MLT1B LTR MaLR -9 381 33 1064 142 7 0 chr6 15611206 15611361 -166803881 - FRAM SINE Alu -22 154 1 255 257 157 81 chr6 15611646 15611907 -166803335 + HAL1 LINE L1 8 288 -2219 390 265 90 41 chr6 15611933 15612178 -166803064 + L2 LINE L2 2204 2460 -854 2096 270 69 4 chr6 15612193 15612742 -166802500 + L1MDa LINE L1 55 639 -5901 * 4079 207 55 7 chr6 15612737 15613835 -166801407 + L1MDa LINE L1 2543 3692 -2848 2088 144 0 7 chr6 15613842 15614148 -166801094 + AluSx SINE Alu 1 304 -8 770 81 9 0 chr6 15614162 15614207 -166801035 + (GGGAA)n Simple_repeat Simple_repeat 1 157 0 770 81 9 0 chr6 15614207 15614318 -166800924 + (GGGAA)n Simple_repeat Simple_repeat 5 116 0 603 273 34 61 chr6 15614339 15614503 -166800739 + L1MDa LINE L1 3647 3801 -2739 2364 74 20 3 chr6 15614503 15614801 -166800441 + AluSg SINE Alu 1 303 -7 603 273 34 61 chr6 15614801 15614933 -166800309 + L1MDa LINE L1 3801 3935 -2605 1389 214 126 10 chr6 15614935 15615341 -166799901 + HAL1 LINE L1 1466 1918 -589 1253 244 44 60 chr6 15615377 15615898 -166799344 + HAL1 LINE L1 1995 2507 0 2157 102 3 3 chr6 15615923 15616206 -166799036 - AluSq SINE Alu -17 296 14 28 0 0 0 chr6 15616903 15616931 -166798311 + AT_rich Low_complexity Low_complexity 1 28 0 1869 144 4 7 chr6 15616966 15617265 -166797977 + AluJb SINE Alu 17 314 0 567 219 116 30 chr6 15617321 15617485 -166797757 - MER45A DNA AcHobo 0 178 1 2048 104 0 4 chr6 15617591 15617860 -166797382 + AluSx SINE Alu 35 302 -10 270 0 0 0 chr6 15619687 15619717 -166795525 + (A)n Simple_repeat Simple_repeat 1 30 0 775 312 87 25 chr6 15619872 15620388 -166794854 - L1MC4a LINE L1 -1875 5933 5386 1009 196 28 0 chr6 15621124 15621303 -166793939 + MER20 DNA MER1_type 36 219 0 1468 207 70 6 chr6 15621423 15621766 -166793476 - MLT1A1 LTR MaLR 0 365 1 562 237 175 65 chr6 15622284 15622685 -166792557 + MLT1H LTR MaLR 96 540 -9 536 170 104 22 chr6 15623748 15623883 -166791359 + MLT1H LTR MaLR 396 541 -8 2247 129 7 45 chr6 15625402 15625805 -166789437 + MLT1B LTR MaLR 1 388 -2 238 206 55 27 chr6 15627163 15627236 -166788006 - L2 LINE L2 -1 3271 3197 189 147 0 0 chr6 15628505 15628539 -166786703 + (CAT)n Simple_repeat Simple_repeat 2 35 0 212 349 45 15 chr6 15628539 15628671 -166786571 - MIR SINE MIR -71 191 56 336 313 38 0 chr6 15628909 15629040 -166786202 - MIR SINE MIR -21 241 106 1222 204 0 9 chr6 15629505 15629726 -166785516 - MER20 DNA MER1_type 0 219 1 525 281 36 10 chr6 15630053 15630245 -166784997 + MIR SINE MIR 53 249 -13 270 0 0 0 chr6 15630974 15631004 -166784238 + (GA)n Simple_repeat Simple_repeat 1 30 0 782 216 52 39 chr6 15631596 15631748 -166783494 + MIR SINE MIR 3 160 -102 1868 224 42 11 chr6 15631748 15632198 -166783044 - MLT1C LTR MaLR 0 467 4 782 216 52 39 chr6 15632198 15632276 -166782966 + MIR SINE MIR 160 236 -26 228 287 64 75 chr6 15632275 15632463 -166782779 - MIR SINE MIR -59 203 18 * 1486 109 41 5 chr6 15632684 15632905 -166782337 - MER30 DNA MER1_type 0 230 2 612 251 72 43 chr6 15633030 15633237 -166782005 - MIR SINE MIR -26 236 24 488 281 133 3 chr6 15633237 15633448 -166781794 - L1MC/D LINE L1 -345 5776 5572 43 92 0 0 chr6 15633900 15634020 -166781222 + AT_rich Low_complexity Low_complexity 1 120 0 521 213 0 0 chr6 15634020 15634114 -166781128 + Tigger7 DNA MER2_type 1 94 -611 * 903 200 24 6 chr6 15634112 15634282 -166780960 - MER105 DNA DNA -31 173 1 327 276 74 36 chr6 15634377 15634652 -166780590 - L1MC/D LINE L1 -629 5533 5247 240 372 36 29 chr6 15634796 15634933 -166780309 - L2 LINE L2 -1 3271 3134 388 237 53 24 chr6 15636050 15636219 -166779023 - Charlie7 DNA MER1_type 0 2612 2439 379 247 10 21 chr6 15636205 15636302 -166778940 - Charlie7 DNA MER1_type -2516 96 1 * 343 240 0 0 chr6 15636303 15636378 -166778864 - MIR SINE MIR -71 137 63 2104 120 7 0 chr6 15637398 15637681 -166777561 + AluSp SINE Alu 1 285 -28 363 44 0 0 chr6 15637682 15637727 -166777515 + (GGAGAA)n Simple_repeat Simple_repeat 5 49 0 1822 168 0 19 chr6 15637868 15638178 -166777064 + AluJb SINE Alu 1 304 -8 322 259 80 9 chr6 15638182 15638294 -166776948 + MIR SINE MIR 84 203 -59 355 279 116 52 chr6 15638805 15639038 -166776204 + LTR16C LTR ERVL 244 491 0 3607 111 38 30 chr6 15639087 15639612 -166775630 - MER1A DNA MER1_type 0 529 1 1035 221 0 35 chr6 15639618 15639849 -166775393 + MER58A DNA MER1_type 2 224 0 222 140 140 0 chr6 15639850 15639907 -166775335 + MER5A DNA MER1_type 10 74 -115 483 287 41 83 chr6 15640058 15640230 -166775012 - Charlie8 DNA MER1_type -1916 501 323 2137 131 3 0 chr6 15640230 15640527 -166774715 - AluSx SINE Alu -14 298 1 483 287 41 83 chr6 15640527 15640838 -166774404 - Charlie8 DNA MER1_type -2094 323 38 246 316 79 0 chr6 15641522 15641674 -166773568 + MIR SINE MIR 45 208 -54 343 183 0 0 chr6 15643529 15643589 -166771653 + MIR3 SINE MIR 107 166 -42 1434 81 0 0 chr6 15643880 15644066 -166771176 - L1PA8 LINE L1 -8 6164 5979 434 257 47 29 chr6 15644111 15644291 -166770951 - L1MC/D LINE L1 -371 5750 5579 2265 103 3 3 chr6 15645066 15645367 -166769875 + AluSg SINE Alu 1 301 -9 200 299 0 124 chr6 15645593 15645730 -166769512 + L3 LINE CR1 1393 1512 -65 5014 87 10 9 chr6 15647231 15647912 -166767330 + L1PA11 LINE L1 5492 6173 -1 284 331 92 11 chr6 15648043 15648327 -166766915 + LTR16A LTR ERVL 60 366 -84 1723 211 64 10 chr6 15648414 15648821 -166766421 + L1MB2 LINE L1 5741 6169 -2 3415 306 43 28 chr6 15648840 15650196 -166765046 + HERV16 LTR ERVL 39 1415 -3581 2504 132 3 6 chr6 15650406 15650771 -166764471 - THE1B LTR MaLR 0 364 1 1611 270 69 15 chr6 15650883 15651406 -166763836 + HERV16 LTR ERVL 1841 2391 -2605 367 329 10 13 chr6 15651540 15651833 -166763409 + MERVL LTR ERVL 4731 5097 -667 436 328 90 4 chr6 15652046 15652314 -166762928 + LTR16A LTR ERVL 148 438 -12 824 176 0 0 chr6 15652472 15652597 -166762645 + FLAM_C SINE Alu 1 125 -18 2271 109 0 16 chr6 15653161 15653473 -166761769 + AluSc SINE Alu 1 307 -2 180 0 0 0 chr6 15654067 15654087 -166761155 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 343 262 113 21 chr6 15654111 15654252 -166760990 - MER5B DNA MER1_type -7 171 18 771 307 96 54 chr6 15654518 15655091 -166760151 + L3 LINE CR1 185 781 -796 603 351 62 27 chr6 15655091 15655573 -166759669 + L3 LINE CR1 1076 1574 -3 2400 204 24 22 chr6 15656627 15657166 -166758076 + MER74A LTR ERVL 1 540 -18 2384 86 3 3 chr6 15657173 15657486 -166757756 + AluSp SINE Alu 1 313 0 765 278 86 42 chr6 15657493 15658132 -166757110 + L2 LINE L2 2637 3313 0 748 234 97 21 chr6 15659297 15659535 -166755707 - MIR SINE MIR -1 261 3 484 270 68 14 chr6 15659905 15660053 -166755189 - MER63A DNA MER1_type 0 210 55 204 158 0 0 chr6 15660053 15660091 -166755151 + (TG)n Simple_repeat Simple_repeat 1 38 0 369 241 191 6 chr6 15660467 15660629 -166754613 + MIR SINE MIR 37 228 -34 206 369 67 13 chr6 15660743 15660892 -166754350 + L2 LINE L2 2904 3060 -212 357 234 109 8 chr6 15661122 15661250 -166753992 - MIR3 SINE MIR -7 201 61 4626 95 0 3 chr6 15661683 15662304 -166752938 + L1PA11 LINE L1 5546 6164 -10 180 0 0 0 chr6 15662309 15662329 -166752913 + (TAA)n Simple_repeat Simple_repeat 2 21 0 261 251 185 71 chr6 15662355 15662566 -166752676 + L2 LINE L2 3078 3312 -1 704 274 102 45 chr6 15662602 15663112 -166752130 - L1MEc LINE L1 -3009 3206 2668 31 0 0 0 chr6 15663127 15663158 -166752084 + AT_rich Low_complexity Low_complexity 1 31 0 483 331 56 43 chr6 15663383 15663851 -166751391 - L1MEc LINE L1 -4619 1777 1304 315 0 0 0 chr6 15663852 15663887 -166751355 + (TTC)n Simple_repeat Simple_repeat 2 36 0 238 229 0 49 chr6 15663941 15664002 -166751240 + MER3 DNA MER1_type 41 98 -111 198 103 0 0 chr6 15664197 15664226 -166751016 + (TA)n Simple_repeat Simple_repeat 1 29 0 441 54 0 0 chr6 15664255 15664311 -166750931 + (CA)n Simple_repeat Simple_repeat 2 57 0 315 297 0 85 chr6 15664340 15664505 -166750737 - L1MEc LINE L1 -5538 667 517 1087 192 65 39 chr6 15664799 15665059 -166750183 + L1MD3 LINE L1 7582 7848 -147 1075 128 0 0 chr6 15665071 15665227 -166750015 - AluSg/x SINE Alu -3 307 152 645 139 93 0 chr6 15665236 15665365 -166749877 + L1MD3 LINE L1 7855 7995 0 527 90 0 8 chr6 15665428 15665650 -166749592 + AluY SINE Alu 1 301 -11 2386 186 21 21 chr6 15666021 15666131 -166749111 + MLT1C LTR MaLR 1 110 -357 2494 149 84 0 chr6 15666131 15666548 -166748694 + LTR47A LTR ERVL 1 452 0 2386 186 21 21 chr6 15666548 15666904 -166748338 + MLT1C LTR MaLR 109 467 0 1038 214 54 44 chr6 15668096 15668413 -166746829 - MER33 DNA MER1_type 0 324 5 34 0 0 0 chr6 15669254 15669288 -166745954 + AT_rich Low_complexity Low_complexity 1 34 0 528 145 0 0 chr6 15669288 15669364 -166745878 - FAM SINE Alu -22 163 88 922 219 48 88 chr6 15669396 15669647 -166745595 - MLT1F LTR MaLR -294 248 8 2071 92 37 7 chr6 15670583 15670893 -166744349 + AluSg SINE Alu 1 318 0 359 282 53 62 chr6 15672254 15672463 -166742779 + HAL1 LINE L1 31 237 -2270 207 0 0 0 chr6 15672596 15672619 -166742623 + (CAA)n Simple_repeat Simple_repeat 2 24 0 894 241 55 43 chr6 15672619 15672964 -166742278 + HAL1 LINE L1 1745 2093 -414 2030 183 66 29 chr6 15673041 15673081 -166742161 - MSTB LTR MaLR 0 426 389 2275 89 14 0 chr6 15673081 15673374 -166741868 + AluSq SINE Alu 1 297 -16 2030 183 66 29 chr6 15673374 15673744 -166741498 - MSTB LTR MaLR -37 389 1 2586 170 74 2 chr6 15673744 15674215 -166741027 - MSTB-int LTR MaLR 0 1651 1147 306 0 0 0 chr6 15676877 15676911 -166738331 + (CA)n Simple_repeat Simple_repeat 2 35 0 713 272 0 0 chr6 15676932 15677105 -166738137 + MIR SINE MIR 4 176 -86 2135 75 0 8 chr6 15677245 15677511 -166737731 + AluY SINE Alu 1 264 -47 2022 234 66 55 chr6 15677863 15678411 -166736831 + MLT2B3 LTR ERVL 1 554 0 219 315 0 14 chr6 15678523 15678596 -166736646 - MIR SINE MIR -189 73 2 180 333 0 0 chr6 15680400 15680457 -166734785 + L2 LINE L2 3256 3312 -1 2494 262 12 4 chr6 15682070 15682632 -166732610 + MLT1F1 LTR MaLR 1 567 0 220 279 44 0 chr6 15683191 15683259 -166731983 - MIR SINE MIR -69 193 123 1605 311 85 14 chr6 15684521 15685377 -166729865 + L2 LINE L2 1978 2894 -420 1825 154 175 21 chr6 15686113 15686535 -166728707 + LTR10A LTR ERV1 15 548 -61 252 304 133 13 chr6 15688357 15688515 -166726727 + MIR SINE MIR 48 224 -38 2321 117 122 8 chr6 15688842 15689226 -166726016 + MSTA LTR MaLR 1 428 0 2054 145 3 0 chr6 15689707 15690011 -166725231 + AluSq SINE Alu 1 305 -8 384 238 0 24 chr6 15691269 15691353 -166723889 + MLT1K LTR MaLR 433 514 -74 932 63 87 0 chr6 15691783 15691910 -166723332 + MER85 DNA T2_type 1 138 -1 1480 257 158 19 chr6 15692009 15692527 -166722715 - MLT1F1 LTR MaLR 0 567 4 198 0 0 0 chr6 15692773 15692795 -166722447 + (CA)n Simple_repeat Simple_repeat 2 23 0 4632 171 32 22 chr6 15692878 15693869 -166721373 - Charlie1a DNA MER1_type -6 1449 449 888 201 0 13 chr6 15693885 15694044 -166721198 + FRAM SINE Alu 1 157 -19 243 0 0 0 chr6 15694051 15694078 -166721164 + (CA)n Simple_repeat Simple_repeat 2 28 0 1281 192 31 102 chr6 15694092 15694525 -166720717 - Charlie1a DNA MER1_type -1035 420 29 1846 128 29 42 chr6 15694876 15695189 -166720053 + AluJo SINE Alu 1 309 -3 225 0 0 0 chr6 15695774 15695799 -166719443 + (CA)n Simple_repeat Simple_repeat 2 26 0 2025 148 3 0 chr6 15696259 15696557 -166718685 + AluSx SINE Alu 1 299 -13 2167 267 89 9 chr6 15696634 15697440 -166717802 + L1ME3A LINE L1 5295 6165 -5 237 280 27 0 chr6 15697706 15697781 -166717461 - L2 LINE L2 -25 3247 3171 180 179 0 0 chr6 15698607 15698646 -166716596 + GA-rich Low_complexity Low_complexity 2 40 0 524 261 137 0 chr6 15699819 15699972 -166715270 + MER5A DNA MER1_type 9 182 -7 491 324 55 21 chr6 15700131 15700369 -166714873 + MLT1K LTR MaLR 334 579 -9 1794 224 75 27 chr6 15701765 15702247 -166712995 - MLT1D LTR MaLR 0 505 1 261 300 133 0 chr6 15704232 15704322 -166710920 - MIR SINE MIR -126 136 35 225 139 0 0 chr6 15704507 15704550 -166710692 + (TC)n Simple_repeat Simple_repeat 1 43 0 263 330 0 0 chr6 15704670 15704758 -166710484 - MIR SINE MIR -55 207 120 977 212 33 24 chr6 15705637 15705849 -166709393 - MER58C DNA MER1_type 0 215 2 197 222 62 49 chr6 15706109 15706190 -166709052 + MIR SINE MIR 73 154 -108 472 238 86 13 chr6 15706679 15706830 -166708412 + MIR3 SINE MIR 33 194 -14 889 169 54 33 chr6 15708628 15708812 -166706430 + MER5A DNA MER1_type 2 189 0 327 294 70 47 chr6 15709599 15709813 -166705429 + L2 LINE L2 3067 3285 -28 223 235 12 74 chr6 15710324 15710405 -166704837 - MIR SINE MIR -46 216 141 2090 112 0 7 chr6 15710626 15710929 -166704313 - AluSg SINE Alu -9 301 1 270 203 14 43 chr6 15711651 15711720 -166703522 + G-rich Low_complexity Low_complexity 4 70 0 411 56 0 0 chr6 15712152 15712206 -166703036 + (TG)n Simple_repeat Simple_repeat 1 54 0 1740 202 62 29 chr6 15712256 15712706 -166702536 - MLT1C LTR MaLR -2 465 1 222 426 0 0 chr6 15712980 15713081 -166702161 - MIR SINE MIR -3 259 159 461 285 207 6 chr6 15713100 15713279 -166701963 - MIR SINE MIR -21 241 27 223 244 31 87 chr6 15713683 15713810 -166701432 + L2 LINE L2 2661 2780 -534 956 200 28 5 chr6 15714169 15714384 -166700858 - L1MB2 LINE L1 -12 6159 5940 328 281 130 65 chr6 15717060 15717245 -166697997 - MIR SINE MIR -19 243 47 1128 163 76 58 chr6 15717653 15717821 -166697421 + L1MB4 LINE L1 5892 6068 -112 441 54 0 0 chr6 15717821 15717877 -166697365 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1128 163 76 58 chr6 15717877 15717985 -166697257 + L1MB4 LINE L1 6068 6173 -7 2009 162 3 21 chr6 15717985 15718361 -166696881 + L1MB3 LINE L1 5813 6181 -2 343 282 43 8 chr6 15720406 15720523 -166694719 - MIR SINE MIR 0 262 142 2158 138 40 0 chr6 15720523 15720871 -166694371 + MLT2D LTR ERVL 5 366 -48 241 169 15 31 chr6 15720890 15720955 -166694287 + T-rich Low_complexity Low_complexity 5 68 0 247 167 0 0 chr6 15720979 15721021 -166694221 + MLT2D LTR ERVL 348 389 -8 * 253 56 111 0 chr6 15720989 15721025 -166694217 + MLT2B1 LTR ERVL 481 520 0 417 298 15 15 chr6 15721025 15721156 -166694086 - MIR SINE MIR -117 145 15 258 299 109 40 chr6 15721300 15721474 -166693768 + MIR SINE MIR 21 206 -56 628 307 36 13 chr6 15722189 15722414 -166692828 - MIR SINE MIR -29 233 4 242 273 224 14 chr6 15722464 15722607 -166692635 + MIR3 SINE MIR 33 205 -3 212 261 15 15 chr6 15723644 15723709 -166691533 + L2 LINE L2 3004 3068 -204 285 264 186 0 chr6 15725815 15725944 -166689298 - MIR3 SINE MIR -23 185 33 479 165 146 0 chr6 15726214 15726317 -166688925 + MER96 DNA MER1_type? 50 167 -8 273 57 0 0 chr6 15727335 15727370 -166687872 + (TG)n Simple_repeat Simple_repeat 2 36 0 246 81 0 0 chr6 15728185 15728222 -166687020 + (CA)n Simple_repeat Simple_repeat 1 37 0 355 331 25 16 chr6 15729549 15729670 -166685572 - MIR SINE MIR -71 137 16 181 238 0 0 chr6 15729681 15729723 -166685519 - L3 LINE CR1 -148 1429 1388 221 364 61 23 chr6 15730326 15730458 -166684784 - L2 LINE L2 0 3272 3136 273 255 49 49 chr6 15730494 15730596 -166684646 + L2 LINE L2 2988 3089 -183 279 133 0 0 chr6 15730775 15730820 -166684422 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1979 115 0 7 chr6 15731923 15732209 -166683033 + AluSx SINE Alu 17 300 -12 643 154 29 0 chr6 15732309 15732413 -166682829 + U6 snRNA snRNA 1 107 0 202 242 145 0 chr6 15732798 15732860 -166682382 - L3 LINE CR1 -4 1573 1503 2151 111 0 0 chr6 15732876 15733182 -166682060 + AluY SINE Alu 1 306 -5 2170 112 0 0 chr6 15733541 15733845 -166681397 - AluSc SINE Alu -5 304 1 1380 228 132 41 chr6 15734347 15734808 -166680434 - MLT1D LTR MaLR 0 505 3 345 193 0 0 chr6 15736721 15736778 -166678464 - L2 LINE L2 -12 3260 3204 437 313 60 43 chr6 15737261 15737494 -166677748 - L3 LINE CR1 -33 1544 1308 1284 235 150 22 chr6 15737954 15738402 -166676840 + MLT1D LTR MaLR 1 626 0 1207 261 14 14 chr6 15739477 15739760 -166675482 + Tigger8 DNA MER2_type 4 286 -380 592 236 72 29 chr6 15739816 15740024 -166675218 + Tigger8 DNA MER2_type 421 637 -29 703 226 167 16 chr6 15740232 15740418 -166674824 + MER20 DNA MER1_type 1 214 -5 2458 133 25 46 chr6 15740523 15740958 -166674284 - MSTB LTR MaLR 0 426 1 724 279 88 0 chr6 15741029 15741244 -166673998 - MIR SINE MIR 0 262 29 272 268 98 0 chr6 15742322 15742434 -166672808 - MIR SINE MIR -8 254 132 1207 233 41 80 chr6 15742435 15742895 -166672347 - L1ME3A LINE L1 -9 6161 5720 364 267 92 30 chr6 15742898 15743029 -166672213 - MIR SINE MIR -123 139 1 1812 163 17 98 chr6 15744236 15744646 -166670596 - MLT1B LTR MaLR -9 381 5 207 0 0 0 chr6 15745082 15745105 -166670137 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 295 330 231 14 chr6 15746188 15746482 -166668760 - L2 LINE L2 0 3272 2915 291 371 61 35 chr6 15746950 15747292 -166667950 - L2 LINE L2 -80 3192 2842 756 165 0 45 chr6 15747653 15747815 -166667427 + FRAM SINE Alu 20 175 0 359 356 127 28 chr6 15748489 15748843 -166666399 - L2 LINE L2 -1149 2165 1777 1873 159 35 35 chr6 15748846 15749089 -166666153 - MER7A DNA MER2_type -2693 345 102 2040 127 0 13 chr6 15749089 15749405 -166665837 + AluSx SINE Alu 1 312 0 1873 159 35 35 chr6 15749405 15749507 -166665735 - MER7A DNA MER2_type -2935 103 2 274 220 285 19 chr6 15749638 15749852 -166665390 + L1ME4a LINE L1 5813 6083 -38 2095 68 24 31 chr6 15751335 15751627 -166663615 + AluSp SINE Alu 1 290 -23 4461 156 103 14 chr6 15751631 15752446 -166662796 - MER54A LTR ERVL -13 888 1 3325 190 50 106 chr6 15752457 15753183 -166662059 - L1MC5 LINE L1 -75 7886 7262 782 168 158 16 chr6 15753183 15753373 -166661869 + MER20 DNA MER1_type 1 217 -2 3325 190 50 106 chr6 15753373 15753928 -166661314 - L1MC5 LINE L1 -699 7262 6677 1627 82 0 0 chr6 15754399 15754607 -166660635 + AluSc SINE Alu 1 208 -101 266 216 0 0 chr6 15754607 15754658 -166660584 + AluSc SINE Alu 249 299 0 189 0 0 0 chr6 15755263 15755284 -166659958 + (T)n Simple_repeat Simple_repeat 1 21 0 602 221 108 28 chr6 15757451 15757664 -166657578 + MLT1J2 LTR MaLR 17 246 -204 624 205 13 128 chr6 15757764 15757986 -166657256 + MLT1J2 LTR MaLR 259 409 0 189 339 0 0 chr6 15758005 15758061 -166657181 + MIR SINE MIR 182 237 -25 222 222 44 0 chr6 15758061 15758106 -166657136 + L2 LINE L2 3205 3251 -21 1663 191 36 28 chr6 15758305 15758667 -166656575 + MLT1A1 LTR MaLR 1 365 0 540 253 62 7 chr6 15758941 15759087 -166656155 + MER97b DNA MER1_type? 8 161 -892 342 171 13 13 chr6 15759609 15759685 -166655557 - L1MB8 LINE L1 -104 6074 5999 2282 138 30 54 chr6 15759818 15760245 -166654997 + MSTC LTR MaLR 1 417 -11 365 336 30 8 chr6 15760665 15760799 -166654443 - MIR SINE MIR -79 183 47 230 320 95 35 chr6 15760813 15761013 -166654229 - MLT1J LTR MaLR -3 508 297 253 243 40 27 chr6 15761027 15761101 -166654141 - MLT1L LTR MaLR -318 297 223 258 253 20 71 chr6 15762223 15762322 -166652920 + MIR3 SINE MIR 110 203 -5 231 268 102 24 chr6 15762402 15762529 -166652713 - MIR SINE MIR -10 252 116 736 225 95 161 chr6 15762542 15763581 -166651661 + L2 LINE L2 2295 3296 -17 22 35 0 0 chr6 15764330 15764359 -166650883 + AT_rich Low_complexity Low_complexity 1 29 0 3058 48 0 16 chr6 15764368 15764742 -166650500 - L1PA8 LINE L1 -1 6171 5804 246 149 64 0 chr6 15764913 15764960 -166650282 + MER54A LTR ERVL 337 386 -515 2143 113 0 10 chr6 15765025 15765327 -166649915 - AluSq SINE Alu -12 301 3 2038 203 19 7 chr6 15765438 15765871 -166649371 + MER114 LTR ERV 1 438 -210 383 239 18 9 chr6 15765909 15766018 -166649224 + MER114 LTR ERV 539 648 0 2177 110 3 0 chr6 15767050 15767350 -166647892 - AluSg SINE Alu -9 301 1 180 0 0 0 chr6 15767362 15767382 -166647860 + (T)n Simple_repeat Simple_repeat 1 20 0 331 314 24 32 chr6 15767763 15767887 -166647355 + MIR SINE MIR 25 147 -115 1143 157 13 55 chr6 15767888 15768124 -166647118 + L1MB5 LINE L1 5799 6024 -150 1526 187 43 82 chr6 15768124 15768563 -166646679 + MLT1C LTR MaLR 1 422 -45 740 184 0 7 chr6 15768575 15768716 -166646526 + L1MB5 LINE L1 6025 6164 -10 366 230 35 0 chr6 15768768 15768855 -166646387 + MIR SINE MIR 173 262 0 3015 103 37 18 chr6 15768985 15769026 -166646216 - MLT2A1 LTR ERVL 0 444 405 387 0 0 0 chr6 15769026 15769069 -166646173 + (CA)n Simple_repeat Simple_repeat 2 44 0 3015 103 37 18 chr6 15769069 15769463 -166645779 - MLT2A1 LTR ERVL -39 405 1 596 298 88 17 chr6 15770817 15771055 -166644187 - MIR SINE MIR 0 262 8 216 0 0 0 chr6 15771275 15771299 -166643943 + (A)n Simple_repeat Simple_repeat 1 24 0 222 253 0 27 chr6 15771421 15771496 -166643746 + A-rich Low_complexity Low_complexity 3 75 0 3600 129 17 17 chr6 15772067 15772594 -166642648 - MER1A DNA MER1_type 0 527 1 299 290 0 0 chr6 15772740 15772809 -166642433 + L1ME LINE L1 5525 5593 -528 1867 126 0 0 chr6 15773205 15773460 -166641782 - AluSx SINE Alu -5 307 53 2021 115 7 7 chr6 15773497 15773776 -166641466 - AluSx SINE Alu -19 293 15 554 274 142 5 chr6 15773846 15774036 -166641206 + MIR SINE MIR 47 262 0 190 362 57 29 chr6 15774026 15774131 -166641111 - L2 LINE L2 -3 3269 3162 * 1077 214 106 65 chr6 15774155 15774477 -166640765 + MER2 DNA MER2_type 3 337 -8 204 306 42 14 chr6 15774796 15774868 -166640374 - MIR SINE MIR -88 120 47 554 239 61 61 chr6 15775422 15775635 -166639607 + MIR SINE MIR 20 232 -30 2241 86 4 0 chr6 15775700 15775980 -166639262 + AluSp SINE Alu 1 281 -32 2078 99 23 30 chr6 15776760 15777062 -166638180 - AluSq SINE Alu -13 300 1 370 343 50 14 chr6 15777612 15777752 -166637490 + MIR SINE MIR 43 187 -75 495 230 24 8 chr6 15778113 15778239 -166637003 - MER94 DNA DNA 0 134 7 314 189 47 9 chr6 15778495 15778601 -166636641 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 535 44 108 0 chr6 15778601 15778759 -166636483 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 0 0 0 chr6 15778823 15778850 -166636392 + AT_rich Low_complexity Low_complexity 1 27 0 405 243 62 35 chr6 15779604 15779748 -166635494 + MLT1L LTR MaLR 466 613 -2 533 289 44 72 chr6 15780210 15780459 -166634783 + MIR SINE MIR 21 262 0 2257 92 0 0 chr6 15780964 15781270 -166633972 - AluSx SINE Alu 0 306 1 753 280 88 79 chr6 15782389 15782697 -166632545 + Charlie7 DNA MER1_type 89 404 -2208 2404 90 0 19 chr6 15782697 15783008 -166632234 + AluSq SINE Alu 1 305 -8 753 280 88 79 chr6 15783008 15783131 -166632111 + Charlie7 DNA MER1_type 404 524 -2088 1083 142 7 0 chr6 15783224 15783414 -166631828 + AluSg/x SINE Alu 130 320 0 967 213 36 0 chr6 15783416 15783641 -166631601 + Charlie7 DNA MER1_type 599 831 -1781 24 53 0 0 chr6 15783668 15783706 -166631536 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr6 15783735 15783762 -166631480 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr6 15783762 15783783 -166631459 + AT_rich Low_complexity Low_complexity 1 21 0 2248 109 0 3 chr6 15783923 15784227 -166631015 + AluSx SINE Alu 1 303 -9 694 259 132 9 chr6 15784305 15784533 -166630709 + MIR SINE MIR 7 262 0 222 118 0 0 chr6 15784535 15784569 -166630673 + (TTA)n Simple_repeat Simple_repeat 2 35 0 294 29 0 0 chr6 15784701 15784736 -166630506 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1729 164 4 7 chr6 15784736 15785017 -166630225 - AluJb SINE Alu -32 280 1 1617 145 4 0 chr6 15785023 15785257 -166629985 - AluSx SINE Alu -77 235 1 233 302 71 78 chr6 15785267 15785562 -166629680 + L2 LINE L2 3021 3313 0 274 356 61 0 chr6 15785705 15785837 -166629405 + MIR3 SINE MIR 38 177 -31 2958 152 12 0 chr6 15785885 15786306 -166628936 + MSTB LTR MaLR 1 426 0 880 95 16 0 chr6 15786594 15786720 -166628522 + L1MA8 LINE L1 6154 6281 -10 333 328 120 20 chr6 15786741 15787084 -166628158 - LTR33A LTR ERVL -106 415 54 2185 114 0 0 chr6 15787177 15787466 -166627776 - AluSx SINE Alu -15 297 9 270 95 0 0 chr6 15788600 15788642 -166626600 + (GA)n Simple_repeat Simple_repeat 2 43 0 236 302 53 0 chr6 15788714 15788801 -166626441 + MIR SINE MIR 77 168 -61 1914 134 33 0 chr6 15788905 15789180 -166626062 - AluSg SINE Alu -26 284 1 200 350 40 20 chr6 15789772 15789872 -166625370 + MIR SINE MIR 38 139 -69 231 336 254 0 chr6 15790009 15790131 -166625111 + MER91A DNA MER1_type 3 155 -41 271 279 174 0 chr6 15792779 15792865 -166622377 - MIR SINE MIR -75 187 87 2321 93 3 3 chr6 15794612 15794914 -166620328 + AluSg SINE Alu 1 302 -8 1264 264 40 46 chr6 15795997 15796546 -166618696 - L2 LINE L2 -4 3309 2767 993 237 176 0 chr6 15796551 15797142 -166618100 - LTR50 LTR ERVL -3 792 2 858 221 172 50 chr6 15797143 15797470 -166617772 - L2 LINE L2 -545 2769 2483 2037 125 11 0 chr6 15797470 15797750 -166617492 + AluSx SINE Alu 20 302 -10 858 221 172 50 chr6 15797750 15797875 -166617367 - L2 LINE L2 -831 2483 2183 288 359 124 17 chr6 15797900 15798134 -166617108 + MIR SINE MIR 3 261 -1 24 0 0 0 chr6 15798353 15798377 -166616865 + AT_rich Low_complexity Low_complexity 1 24 0 588 150 177 0 chr6 15798377 15798490 -166616752 - FLAM_C SINE Alu 0 133 1 615 265 86 6 chr6 15799495 15799657 -166615585 + MER5B DNA MER1_type 1 175 -3 724 129 8 8 chr6 15799766 15799784 -166615458 + (TTCC)n Simple_repeat Simple_repeat 1 18 -114 2596 158 10 2 chr6 15799784 15800183 -166615059 - MER57A LTR ERV1 0 403 2 724 129 8 8 chr6 15800183 15800296 -166614946 + (TTCC)n Simple_repeat Simple_repeat 17 132 0 22 35 0 0 chr6 15800563 15800592 -166614650 + AT_rich Low_complexity Low_complexity 1 29 0 1696 171 54 7 chr6 15801953 15802323 -166612919 + AluJo SINE Alu 1 384 0 2188 119 32 3 chr6 15803518 15803863 -166611379 + L1MA4 LINE L1 5941 6295 -5 2471 70 7 0 chr6 15804053 15804353 -166610889 + AluY SINE Alu 1 302 -9 2017 135 10 0 chr6 15804389 15804678 -166610564 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 15805748 15805770 -166609472 + AT_rich Low_complexity Low_complexity 1 22 0 305 296 34 0 chr6 15807197 15807285 -166607957 + MIR SINE MIR 36 126 -136 1834 169 0 7 chr6 15807511 15807807 -166607435 + AluJo SINE Alu 1 294 -18 631 263 142 12 chr6 15808287 15808527 -166606715 - MLT1J LTR MaLR 0 511 241 747 240 58 0 chr6 15808947 15809118 -166606124 + MLT1J LTR MaLR 28 208 -303 225 0 0 0 chr6 15809126 15809151 -166606091 + (CA)n Simple_repeat Simple_repeat 2 26 0 1543 182 19 4 chr6 15809153 15809422 -166605820 + AluJo SINE Alu 1 273 -39 616 141 16 8 chr6 15809429 15809550 -166605692 + GA-rich Low_complexity Low_complexity 3 124 0 731 258 20 63 chr6 15809550 15809802 -166605440 + MLT1J LTR MaLR 271 511 0 208 305 63 11 chr6 15810664 15810759 -166604483 + MIR SINE MIR 46 145 -63 2087 125 3 23 chr6 15810774 15811079 -166604163 + AluSx SINE Alu 1 299 -13 1662 170 6 50 chr6 15812014 15812337 -166602905 + AluJo SINE Alu 1 309 -3 3475 169 19 2 chr6 15812555 15813170 -166602072 + L1MB3 LINE L1 5551 6176 -7 586 175 70 0 chr6 15813450 15813564 -166601678 + L1ME3A LINE L1 6034 6155 -15 1651 145 34 0 chr6 15816979 15817248 -166597994 - MLT1B LTR MaLR 0 390 113 292 217 241 0 chr6 15817313 15817396 -166597846 - MIR3 SINE MIR -49 159 57 755 235 31 10 chr6 15817629 15817825 -166597417 - MLT1C LTR MaLR 0 467 268 1170 100 6 6 chr6 15817843 15818013 -166597229 + MER4A LTR ERV1 1 170 -494 2119 105 7 17 chr6 15818022 15818318 -166596924 + MER4A LTR ERV1 372 664 0 1412 166 25 17 chr6 15818318 15818559 -166596683 - MLT1C LTR MaLR -224 243 1 583 134 34 59 chr6 15819524 15819643 -166595599 + MLT1B LTR MaLR 5 120 -270 2477 170 70 19 chr6 15819838 15820368 -166594874 + MER89 LTR ERV1 3 559 0 393 22 0 0 chr6 15821546 15821592 -166593650 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 266 38 0 chr6 15822441 15822520 -166592722 + GA-rich Low_complexity Low_complexity 4 85 0 711 286 95 36 chr6 15823047 15823463 -166591779 - LTR16A LTR ERVL -8 449 1 553 228 102 45 chr6 15823774 15824020 -166591222 - L1ME4a LINE L1 -21 6100 5841 192 238 0 0 chr6 15824481 15824523 -166590719 + L3 LINE CR1 1530 1571 -6 454 168 32 80 chr6 15825843 15825905 -166589337 - LTR33 LTR ERVL 0 521 466 1878 128 40 17 chr6 15825905 15826202 -166589040 - AluSx SINE Alu -3 309 6 454 168 32 80 chr6 15826202 15826264 -166588978 - LTR33 LTR ERVL -55 466 403 478 262 87 17 chr6 15826337 15826509 -166588733 - LTR33 LTR ERVL -236 285 102 1127 203 266 18 chr6 15827014 15827408 -166587834 + MLT1C LTR MaLR 14 467 0 217 250 28 42 chr6 15828962 15829034 -166586208 + MIR SINE MIR 186 256 -6 214 159 68 0 chr6 15829603 15829647 -166585595 + GA-rich Low_complexity Low_complexity 4 50 0 2307 112 0 0 chr6 15830298 15830610 -166584632 + AluSx SINE Alu 1 312 0 827 180 7 0 chr6 15830612 15830751 -166584491 + AluJb SINE Alu 134 273 -39 1682 176 59 115 chr6 15831675 15832214 -166583028 + L1MD1 LINE L1 5722 6230 -12 220 281 0 0 chr6 15832216 15832273 -166582969 + GA-rich Low_complexity Low_complexity 2 58 0 1701 166 35 0 chr6 15833272 15833555 -166581687 - AluJb SINE Alu -19 293 1 27 0 0 0 chr6 15834463 15834490 -166580752 + AT_rich Low_complexity Low_complexity 1 27 0 710 158 105 18 chr6 15836384 15836555 -166578687 + MER53 DNA DNA 1 186 -3 2432 84 0 10 chr6 15836891 15837202 -166578040 + AluY SINE Alu 2 309 -2 2109 124 41 0 chr6 15838652 15838943 -166576299 - AluSq SINE Alu -10 303 1 280 220 0 10 chr6 15838954 15839054 -166576188 - L2 LINE L2 -1 3271 3177 2873 122 19 36 chr6 15839198 15839722 -166575520 - L1MA8 LINE L1 -3 6288 5774 1364 201 0 0 chr6 15839771 15840010 -166575232 - L1MA8 LINE L1 -498 5793 5555 1626 157 3 67 chr6 15840152 15840452 -166574790 - AluJo SINE Alu -31 281 1 233 278 127 24 chr6 15840457 15840583 -166574659 - MER113 DNA MER1_type? -378 143 5 304 169 121 48 chr6 15841103 15841186 -166574056 - MLT1C LTR MaLR -378 89 1 593 245 69 65 chr6 15841186 15841286 -166573956 - L2 LINE L2 -522 2792 2694 2364 52 24 10 chr6 15841286 15841577 -166573665 + AluY SINE Alu 1 295 -16 593 245 69 65 chr6 15841577 15841692 -166573550 - L2 LINE L2 -620 2694 2576 564 274 128 54 chr6 15842314 15842458 -166572784 - L2 LINE L2 0 3313 3181 2149 132 3 0 chr6 15842458 15842761 -166572481 + AluSq SINE Alu 1 304 -9 564 274 128 54 chr6 15842761 15843021 -166572221 - L2 LINE L2 -132 3181 2879 262 242 0 15 chr6 15843056 15843122 -166572120 - MER20B DNA MER1_type -623 160 96 725 269 63 16 chr6 15843241 15843291 -166571951 - L2 LINE L2 -474 2840 2794 1806 177 107 19 chr6 15843291 15843720 -166571522 - MLT1C LTR MaLR 0 467 1 725 269 63 16 chr6 15843720 15843922 -166571320 - L2 LINE L2 -520 2794 2576 207 0 0 0 chr6 15844528 15844551 -166570691 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1293 220 23 71 chr6 15845019 15845373 -166569869 + MER58B DNA MER1_type 4 340 -1 2346 113 0 3 chr6 15845439 15845750 -166569492 - AluSx SINE Alu -2 310 1 357 282 57 8 chr6 15845792 15845916 -166569326 - L2 LINE L2 -1 3271 3142 514 220 88 90 chr6 15846284 15846543 -166568699 + L1ME3A LINE L1 5682 5940 -249 733 199 50 50 chr6 15846729 15846910 -166568332 + AluJo SINE Alu 125 305 -7 643 116 0 0 chr6 15846920 15847015 -166568227 + L1MA3 LINE L1 6211 6305 0 377 243 32 54 chr6 15847070 15847255 -166567987 - L2 LINE L2 -580 2734 2554 1784 70 0 17 chr6 15847367 15847608 -166567634 + L1PA14 LINE L1 5925 6161 0 411 244 76 0 chr6 15849231 15849350 -166565892 - MIR3 SINE MIR -23 185 58 1284 132 57 44 chr6 15849641 15849868 -166565374 + Tigger2a DNA MER2_type 1 230 -204 1931 132 0 0 chr6 15849926 15850184 -166565058 - AluSx SINE Alu -54 258 1 1152 178 82 0 chr6 15850186 15850405 -166564837 + Tigger2a DNA MER2_type 198 434 0 1736 174 0 3 chr6 15850603 15850896 -166564346 + AluJo SINE Alu 1 292 -20 202 258 258 0 chr6 15850905 15850994 -166564248 + MER5A DNA MER1_type 69 180 -9 2198 126 0 0 chr6 15851138 15851432 -166563810 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr6 15852192 15852212 -166563030 + (A)n Simple_repeat Simple_repeat 1 20 0 249 108 0 0 chr6 15852429 15852466 -166562776 + (CA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr6 15852657 15852677 -166562565 + (A)n Simple_repeat Simple_repeat 1 20 0 2125 133 0 13 chr6 15853879 15854188 -166561054 - AluSx SINE Alu -7 305 1 33 56 0 0 chr6 15854659 15854713 -166560529 + AT_rich Low_complexity Low_complexity 1 54 0 2051 121 3 0 chr6 15854731 15855013 -166560229 + AluSx SINE Alu 15 297 -15 23 54 0 0 chr6 15855045 15855082 -166560160 + AT_rich Low_complexity Low_complexity 1 37 0 1706 181 15 75 chr6 15855356 15855502 -166559740 + MLT1A2 LTR MaLR 1 154 -220 2029 188 25 0 chr6 15855502 15855858 -166559384 + MLT1A1 LTR MaLR 1 365 0 1706 181 15 75 chr6 15855858 15856109 -166559133 + MLT1A2 LTR MaLR 154 374 0 195 42 0 0 chr6 15856228 15856252 -166558990 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr6 15857038 15857064 -166558178 + (A)n Simple_repeat Simple_repeat 1 26 0 192 97 0 0 chr6 15857225 15857256 -166557986 + (A)n Simple_repeat Simple_repeat 1 31 0 2502 56 7 3 chr6 15857522 15857824 -166557418 + AluSp SINE Alu 1 303 -10 796 278 100 70 chr6 15858616 15859803 -166555439 - L1ME LINE L1 -260 5904 4654 2490 66 0 3 chr6 15859803 15860104 -166555138 + AluSp SINE Alu 3 302 -11 796 278 100 70 chr6 15860104 15860412 -166554830 - L1ME LINE L1 -1510 4654 4357 2350 87 3 6 chr6 15860623 15860937 -166554305 + AluSp SINE Alu 1 310 -3 1358 237 55 23 chr6 15861732 15862116 -166553126 - MSTD LTR MaLR 0 396 1 2358 77 7 0 chr6 15862886 15863196 -166552046 + AluSp SINE Alu 1 312 -1 188 253 165 11 chr6 15865334 15865425 -166549817 - L2 LINE L2 -21 3251 3147 786 136 0 0 chr6 15865756 15865866 -166549376 + MSTC LTR MaLR 1 110 -318 739 151 8 0 chr6 15865856 15865975 -166549267 + MSTC LTR MaLR 309 428 0 * 22 0 0 0 chr6 15865995 15866017 -166549225 + AT_rich Low_complexity Low_complexity 1 22 0 315 208 57 28 chr6 15866591 15866697 -166548545 + L1 LINE L1 5172 5280 -866 239 318 12 12 chr6 15866706 15866791 -166548451 + L1ME3A LINE L1 5545 5629 -2179 348 351 79 10 chr6 15866859 15867061 -166548181 + L1ME3A LINE L1 5683 5898 -272 312 290 93 93 chr6 15867523 15867847 -166547395 - L2 LINE L2 -12 3260 2937 718 168 34 0 chr6 15868376 15868495 -166546747 + AluY SINE Alu 2 124 -187 4350 131 95 47 chr6 15868497 15869891 -166545351 - pTR5 LTR ERV1 0 2438 744 1357 70 0 30 chr6 15869891 15870090 -166545152 + AluY SINE Alu 119 311 0 820 184 63 23 chr6 15870140 15870314 -166544928 - MER5A DNA MER1_type -7 182 2 217 292 15 15 chr6 15870314 15870377 -166544865 - MIR SINE MIR -63 145 83 1401 170 49 35 chr6 15871769 15872057 -166543185 - AluJo SINE Alu -20 292 1 280 288 0 0 chr6 15873361 15873420 -166541822 + MIR SINE MIR 87 145 -63 556 172 123 0 chr6 15874135 15874257 -166540985 - MER103 DNA DNA -3 163 27 1774 166 3 10 chr6 15874272 15874586 -166540656 + AluJb SINE Alu 1 312 0 303 319 138 12 chr6 15874945 15875105 -166540137 - MIR3 SINE MIR -5 203 24 473 258 166 6 chr6 15875317 15875480 -166539762 + MIR3 SINE MIR 20 208 0 1399 204 15 55 chr6 15879304 15879668 -166535574 - MLT1A1 LTR MaLR -3 425 20 2510 163 0 45 chr6 15879673 15880048 -166535194 + Tigger2a DNA MER2_type 3 356 -2352 1566 166 6 54 chr6 15880048 15880361 -166534881 + AluJb SINE Alu 1 298 -14 2510 163 0 45 chr6 15880361 15880432 -166534810 + Tigger2a DNA MER2_type 356 429 -5 492 255 31 31 chr6 15880601 15880762 -166534480 + MIR3 SINE MIR 34 194 -14 1166 143 0 11 chr6 15880909 15881098 -166534144 + AluJo SINE Alu 1 187 -125 245 27 0 0 chr6 15881099 15881136 -166534106 + Alu SINE Alu 130 166 0 242 222 25 74 chr6 15882144 15882225 -166533017 - MIR SINE MIR -78 184 108 233 276 0 46 chr6 15883729 15883816 -166531426 + L2 LINE L2 3230 3312 -1 429 218 7 14 chr6 15883854 15883996 -166531246 + GA-rich Low_complexity Low_complexity 4 144 0 264 59 0 0 chr6 15884910 15884944 -166530298 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 599 135 0 9 chr6 15885034 15885145 -166530097 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 660 291 14 19 chr6 15885150 15885360 -166529882 - MIR SINE MIR -14 248 40 846 246 44 26 chr6 15885750 15885978 -166529264 + MLT1J LTR MaLR 28 259 -252 2133 160 3 8 chr6 15886321 15886689 -166528553 + MER47A DNA MER2_type 1 366 0 2033 147 0 0 chr6 15887554 15887866 -166527376 - AluSx SINE Alu 0 312 1 1793 124 40 40 chr6 15888939 15889238 -166526004 - AluSg SINE Alu -11 299 1 1968 98 4 7 chr6 15891108 15891382 -166523860 + AluSc SINE Alu 1 273 -36 28 29 0 0 chr6 15891382 15891417 -166523825 + AT_rich Low_complexity Low_complexity 1 35 0 262 298 96 10 chr6 15891891 15891995 -166523247 - L2 LINE L2 -6 3266 3154 334 354 53 0 chr6 15892037 15892150 -166523092 + L2 LINE L2 3150 3268 -4 248 0 0 30 chr6 15893000 15893033 -166522209 + (CA)n Simple_repeat Simple_repeat 2 33 0 2178 190 70 0 chr6 15893789 15894220 -166521022 - LOR1b LTR ERV1 0 461 1 2967 239 17 2 chr6 15894498 15895139 -166520103 + MER82 DNA MER2_type 2 652 -1 281 102 8 76 chr6 15895295 15895413 -166519829 + (TA)n Simple_repeat Simple_repeat 1 110 0 1351 138 0 5 chr6 15895416 15895626 -166519616 - AluJb SINE Alu -6 306 98 22 35 0 0 chr6 15895781 15895810 -166519432 + AT_rich Low_complexity Low_complexity 1 29 0 663 158 72 13 chr6 15896272 15896424 -166518818 - MER58 DNA MER1_type -1 2419 2259 1689 169 3 13 chr6 15896426 15896727 -166518515 + AluSq SINE Alu 1 298 -15 359 213 11 75 chr6 15896730 15896824 -166518418 - MER58 DNA MER1_type -2329 91 4 729 203 172 0 chr6 15896839 15897002 -166518240 + MER3 DNA MER1_type 1 191 -18 720 210 40 158 chr6 15897216 15897280 -166517962 + MER119 DNA MER1_type 8 78 -505 1600 183 30 3 chr6 15897280 15897575 -166517667 - AluJb SINE Alu -7 305 3 720 210 40 158 chr6 15897575 15897838 -166517404 + MER119 DNA MER1_type 78 296 -287 1698 103 64 29 chr6 15898117 15898423 -166516819 - AluJo SINE Alu 0 312 2 240 111 0 0 chr6 15899008 15899044 -166516198 + (T)n Simple_repeat Simple_repeat 1 36 0 258 314 114 0 chr6 15899400 15899505 -166515737 - L2 LINE L2 -26 3287 3171 486 368 36 10 chr6 15899918 15900111 -166515131 + L2 LINE L2 2983 3180 -92 802 140 6 28 chr6 15900125 15900304 -166514938 + GA-rich Low_complexity Low_complexity 2 176 0 1802 197 117 5 chr6 15900527 15900939 -166514303 - Charlie4a DNA MER1_type -13 495 38 369 309 69 37 chr6 15900977 15901165 -166514077 - L2 LINE L2 -1407 1907 1714 204 238 83 36 chr6 15902427 15902511 -166512731 - MIR SINE MIR -87 121 34 1404 157 92 0 chr6 15903709 15903971 -166511271 + MER7A DNA MER2_type 1 284 -62 851 159 0 132 chr6 15904042 15904231 -166511011 + Tigger3(Golem) DNA MER2_type 2866 3029 0 2231 108 0 0 chr6 15906047 15906352 -166508890 - AluSq SINE Alu -6 307 3 240 341 55 59 chr6 15906674 15906800 -166508442 + MIR SINE MIR 34 160 -102 2103 136 0 0 chr6 15906800 15907110 -166508132 + AluSx SINE Alu 1 310 -2 240 341 55 59 chr6 15907110 15907203 -166508039 + MIR SINE MIR 160 252 -10 918 193 0 0 chr6 15907232 15907398 -166507844 + FRAM SINE Alu 1 165 -11 577 249 170 61 chr6 15907630 15908125 -166507117 + MLT1H LTR MaLR 1 549 0 360 297 39 8 chr6 15908539 15908667 -166506575 - MIR SINE MIR 0 262 131 * 1067 283 215 8 chr6 15908648 15909137 -166506105 - L2 LINE L2 0 3313 2927 1905 134 3 13 chr6 15909137 15909450 -166505792 + AluJb SINE Alu 1 310 -2 1067 283 215 8 chr6 15909450 15909648 -166505594 - L2 LINE L2 -386 2927 2471 378 309 79 14 chr6 15909667 15909806 -166505436 - MIR SINE MIR -113 149 2 237 180 40 0 chr6 15910603 15910653 -166504589 + CT-rich Low_complexity Low_complexity 1 52 0 743 201 5 79 chr6 15911220 15911409 -166503833 + MIR SINE MIR 61 235 -27 1672 159 43 40 chr6 15911414 15911715 -166503527 - AluJo SINE Alu -10 302 1 21 57 0 0 chr6 15911715 15911750 -166503492 + AT_rich Low_complexity Low_complexity 1 35 0 1278 207 0 7 chr6 15912005 15912275 -166502967 + AluSc SINE Alu 12 279 -30 2109 125 57 20 chr6 15913495 15913846 -166501396 - THE1B LTR MaLR 0 364 1 192 152 0 0 chr6 15914931 15914964 -166500278 + CT-rich Low_complexity Low_complexity 3 35 0 2141 120 0 0 chr6 15915079 15915383 -166499859 + AluSx SINE Alu 1 304 0 753 195 32 37 chr6 15916469 15916659 -166498583 - MER53 DNA DNA 0 189 1 249 259 47 12 chr6 15916874 15916959 -166498283 + GA-rich Low_complexity Low_complexity 1 88 0 219 69 0 0 chr6 15919022 15919051 -166496191 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 15919258 15919279 -166495963 + AT_rich Low_complexity Low_complexity 1 21 0 245 297 69 63 chr6 15919642 15919817 -166495425 - MIR SINE MIR -67 195 20 975 169 0 0 chr6 15921181 15921369 -166493873 - AluJo/FRAM SINE Alu 0 321 134 2179 101 35 0 chr6 15921369 15921655 -166493587 - AluSx SINE Alu -6 306 11 845 339 97 21 chr6 15922219 15923178 -166492064 - L2 LINE L2 -576 2738 1707 235 281 88 9 chr6 15923353 15923467 -166491775 - MIR3 SINE MIR -13 195 73 25 0 0 0 chr6 15924239 15924264 -166490978 + AT_rich Low_complexity Low_complexity 1 25 0 503 211 109 0 chr6 15926067 15926130 -166489112 - MER5A DNA MER1_type 0 189 134 2600 38 3 25 chr6 15926130 15926444 -166488798 + AluY SINE Alu 1 307 -4 503 211 109 0 chr6 15926444 15926527 -166488715 - MER5A DNA MER1_type -55 134 27 245 29 29 0 chr6 15926648 15926682 -166488560 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 458 248 15 14 chr6 15927067 15927206 -166488036 - L1ME3 LINE L1 0 6170 6031 1578 109 0 35 chr6 15927210 15927440 -166487802 - AluSq SINE Alu -9 304 83 2053 128 0 7 chr6 15927440 15927722 -166487520 - AluSx SINE Alu -28 284 5 461 285 52 65 chr6 15927737 15928142 -166487100 - L1MB8 LINE L1 -226 5944 5542 401 282 32 32 chr6 15928257 15928381 -166486861 - L2 LINE L2 0 3313 3190 1758 162 23 10 chr6 15928495 15928620 -166486622 + AluJb SINE Alu 5 127 -185 2340 97 3 3 chr6 15928620 15928919 -166486323 + AluSq SINE Alu 1 299 -14 1758 162 23 10 chr6 15928919 15929096 -166486146 + AluJb SINE Alu 127 311 -1 2590 43 7 3 chr6 15929656 15929957 -166485285 + AluY SINE Alu 1 302 -9 4222 179 13 55 chr6 15930609 15930828 -166484414 - Charlie1a DNA MER1_type -1306 1455 1228 2202 99 0 0 chr6 15930828 15931137 -166484105 + AluSx SINE Alu 1 309 0 4222 179 13 55 chr6 15931137 15931911 -166483331 - Charlie1a DNA MER1_type -1533 1228 503 1146 206 56 103 chr6 15931950 15932417 -166482825 + MLT1C LTR MaLR 23 467 0 * 2051 228 16 46 chr6 15932417 15932631 -166482611 - Charlie1a DNA MER1_type -2259 502 283 2421 69 16 0 chr6 15932631 15932934 -166482308 + AluSp SINE Alu 1 308 -5 2051 228 16 46 chr6 15932934 15933235 -166482007 - Charlie1a DNA MER1_type -2478 283 3 199 342 71 26 chr6 15933572 15933727 -166481515 + L2 LINE L2 2902 3063 -209 2232 127 0 0 chr6 15934199 15934507 -166480735 + AluSx SINE Alu 1 308 -4 346 301 62 20 chr6 15934755 15934901 -166480341 + L2 LINE L2 3117 3268 -4 476 92 46 58 chr6 15935751 15935838 -166479404 - MER53 DNA DNA -2 187 102 513 0 0 0 chr6 15936082 15936139 -166479103 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 2034 111 30 0 chr6 15936141 15936412 -166478830 - AluSg SINE Alu -31 279 1 2528 54 0 0 chr6 15937329 15937625 -166477617 + AluY SINE Alu 1 296 -15 2168 128 0 0 chr6 15937695 15937991 -166477251 + AluSx SINE Alu 1 296 -16 610 283 61 67 chr6 15937995 15938400 -166476842 - MLT1I LTR MaLR 0 409 5 2167 104 3 10 chr6 15938441 15938748 -166476494 + AluSc SINE Alu 1 305 -4 317 243 37 19 chr6 15938853 15938960 -166476282 + L1ME4a LINE L1 6012 6120 -1 195 129 0 0 chr6 15939901 15939932 -166475310 + (A)n Simple_repeat Simple_repeat 1 31 0 2178 111 0 20 chr6 15939934 15940240 -166475002 + AluSg SINE Alu 1 300 -10 2334 88 3 10 chr6 15941522 15941828 -166473414 - AluSp SINE Alu -8 305 2 2027 156 15 38 chr6 15941967 15942269 -166472973 - MLT1B LTR MaLR 0 390 98 1859 135 43 0 chr6 15942269 15942551 -166472691 + AluSx SINE Alu 14 307 -5 2027 156 15 38 chr6 15942551 15942646 -166472596 - MLT1B LTR MaLR -292 98 2 2148 90 31 3 chr6 15944025 15944315 -166470927 + AluSg SINE Alu 1 298 -12 204 67 0 0 chr6 15944315 15944345 -166470897 + (TA)n Simple_repeat Simple_repeat 2 31 0 751 284 43 16 chr6 15944739 15944993 -166470249 + MIR SINE MIR 2 262 0 212 270 32 0 chr6 15945035 15945098 -166470144 - MIR SINE MIR -2 260 196 31 0 0 0 chr6 15945107 15945138 -166470104 + AT_rich Low_complexity Low_complexity 1 31 0 378 243 224 7 chr6 15945643 15945795 -166469447 - MIR SINE MIR -71 191 7 895 200 6 6 chr6 15945936 15946111 -166469131 + FAM SINE Alu 1 49 0 1475 263 77 29 chr6 15946126 15946852 -166468390 - L1MC4a LINE L1 -334 5787 5390 2154 109 27 3 chr6 15947553 15947846 -166467396 + AluSq SINE Alu 1 300 -13 351 302 78 15 chr6 15947969 15948159 -166467083 - L1ME LINE L1 -312 5809 5632 183 80 0 0 chr6 15948159 15948184 -166467058 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1776 156 14 18 chr6 15948188 15948470 -166466772 - AluJo SINE Alu -31 281 1 313 291 127 8 chr6 15948508 15948642 -166466600 - L2 LINE L2 0 3313 3164 279 301 121 60 chr6 15948807 15949205 -166466037 - L2 LINE L2 -351 2963 2502 2162 112 3 0 chr6 15949205 15949501 -166465741 - AluSq SINE Alu -15 298 2 279 301 121 60 chr6 15949501 15949803 -166465439 - L2 LINE L2 -812 2502 2220 272 206 32 16 chr6 15951092 15951155 -166464087 - L1ME4a LINE L1 -90 6031 5968 2383 103 7 0 chr6 15952068 15952378 -166462864 + AluSx SINE Alu 1 312 0 274 250 15 0 chr6 15952496 15952564 -166462678 - MER5B DNA MER1_type 0 178 110 203 149 43 21 chr6 15952575 15952622 -166462620 + (CACCC)n Simple_repeat Simple_repeat 4 51 0 23 0 0 0 chr6 15952949 15952972 -166462270 + AT_rich Low_complexity Low_complexity 1 23 0 2293 106 3 0 chr6 15954036 15954337 -166460905 + AluSp SINE Alu 1 302 -11 208 342 176 5 chr6 15954665 15955080 -166460162 + L2 LINE L2 2013 2498 -816 330 297 51 61 chr6 15955403 15955797 -166459445 + L2 LINE L2 2579 2968 -346 2475 125 188 10 chr6 15955980 15956460 -166458782 + MER34B LTR ERV1 1 565 0 1512 201 43 59 chr6 15957993 15958522 -166456720 - MER39 LTR ERV1 -2 705 1 1098 98 75 61 chr6 15959140 15959354 -166455888 - MER34B LTR ERV1 0 565 349 1429 210 28 10 chr6 15959355 15959646 -166455596 - AluJo SINE Alu -13 299 4 758 176 0 0 chr6 15959651 15959776 -166455466 - FLAM_C SINE Alu -12 131 7 2074 167 14 3 chr6 15959784 15960131 -166455111 - MER34B LTR ERV1 -214 351 1 1652 179 42 0 chr6 15960805 15961090 -166454152 - AluJb SINE Alu -15 297 1 189 0 0 0 chr6 15962398 15962419 -166452823 + (TC)n Simple_repeat Simple_repeat 2 22 0 959 131 7 0 chr6 15962423 15962560 -166452682 - FLAM_C SINE Alu -5 138 1 254 132 19 0 chr6 15962560 15962613 -166452629 + CT-rich Low_complexity Low_complexity 1 54 0 364 200 124 65 chr6 15963932 15964117 -166451125 - MER34C LTR ERV1 -5 580 385 2202 94 33 0 chr6 15964956 15965255 -166449987 + AluSx SINE Alu 1 309 -3 950 165 33 0 chr6 15965546 15965728 -166449514 - MER53 DNA DNA -1 188 1 208 399 74 31 chr6 15968655 15968818 -166446424 + L2 LINE L2 3102 3271 -1 2123 102 7 0 chr6 15969306 15969609 -166445633 + AluSq SINE Alu 2 306 -7 2144 116 10 0 chr6 15970851 15971161 -166444081 + AluSq SINE Alu 1 313 0 1574 98 45 29 chr6 15972273 15972517 -166442725 - AluSx SINE Alu -17 295 48 488 219 10 0 chr6 15972759 15972855 -166442387 + MER5A DNA MER1_type 10 106 -83 478 326 32 11 chr6 15973005 15973195 -166442047 - MIR SINE MIR -55 207 14 805 161 0 29 chr6 15973582 15973719 -166441523 - FLAM_C SINE Alu 0 133 1 181 288 207 27 chr6 15974080 15974191 -166441051 + L3 LINE CR1 340 470 -1107 578 159 251 25 chr6 15974758 15974921 -166440321 + MER63C DNA MER1_type 2 201 -729 719 121 40 87 chr6 15974921 15975070 -166440172 - FLAM_C SINE Alu 0 143 2 2229 202 40 68 chr6 15975072 15975403 -166439839 + MER63C DNA MER1_type 192 530 -530 908 228 27 14 chr6 15975403 15975622 -166439620 - MER58A DNA MER1_type -1 223 2 2229 202 40 68 chr6 15975622 15975786 -166439456 + MER63C DNA MER1_type 530 697 -363 2600 159 19 21 chr6 15975786 15976251 -166438991 - MLT1C LTR MaLR -1 466 3 2229 202 40 68 chr6 15976251 15976311 -166438931 + MER63C DNA MER1_type 697 757 -303 1918 57 4 12 chr6 15976311 15976581 -166438661 + AluY SINE Alu 39 306 0 2114 123 3 0 chr6 15976591 15976899 -166438343 + AluSg SINE Alu 1 309 -1 2229 202 40 68 chr6 15976899 15976996 -166438246 + MER63C DNA MER1_type 766 840 -90 1684 161 0 57 chr6 15977037 15977353 -166437889 - AluSx SINE Alu -12 300 3 455 212 121 0 chr6 15977355 15977454 -166437788 + MER63C DNA MER1_type 820 930 0 2929 68 3 0 chr6 15977503 15977857 -166437385 + THE1A LTR MaLR 1 355 0 680 285 28 64 chr6 15978675 15979088 -166436154 - MLT1J1 LTR MaLR 0 446 71 2168 202 29 2 chr6 15979456 15979871 -166435371 - MSTB LTR MaLR 0 426 1 2156 105 3 7 chr6 15980293 15980597 -166434645 + AluSq SINE Alu 1 303 -10 2206 80 3 7 chr6 15981153 15981452 -166433790 + AluY SINE Alu 1 298 -13 280 242 117 40 chr6 15982269 15982569 -166432673 + MLT1G1 LTR MaLR 3 351 -204 289 262 74 8 chr6 15982569 15982691 -166432551 + MLT1G1 LTR MaLR 462 591 -4 208 339 57 24 chr6 15982720 15982844 -166432398 + MIR SINE MIR 17 144 -118 189 107 0 0 chr6 15982971 15982999 -166432243 + (CA)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr6 15983022 15983044 -166432198 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2165 97 3 0 chr6 15983047 15983335 -166431907 - AluSp SINE Alu -24 289 1 370 235 137 78 chr6 15983422 15983626 -166431616 + MLT1K LTR MaLR 369 584 -4 211 263 18 0 chr6 15984167 15984224 -166431018 + MIR SINE MIR 95 152 -56 2145 113 0 3 chr6 15984224 15984526 -166430716 + AluSq SINE Alu 1 301 -12 2212 170 22 3 chr6 15984600 15984958 -166430284 + MLT1A1 LTR MaLR 1 365 0 207 246 185 0 chr6 15985119 15985184 -166430058 - MIR SINE MIR -12 250 174 8461 125 72 69 chr6 15985224 15986511 -166428731 + L1PA10 LINE L1 4026 5329 -839 2071 104 3 10 chr6 15986511 15986810 -166428432 + AluSx SINE Alu 1 297 -15 8461 125 72 69 chr6 15986810 15987647 -166427595 + L1PA10 LINE L1 5329 6163 -5 619 264 81 30 chr6 15987868 15988266 -166426976 + L1ME3A LINE L1 5727 6169 -1 2282 66 0 53 chr6 15988529 15988847 -166426395 - AluY SINE Alu -10 301 1 660 217 142 9 chr6 15989076 15989288 -166425954 + MIR SINE MIR 5 244 -18 435 324 35 12 chr6 15989552 15989722 -166425520 - MIR SINE MIR -88 174 1 620 215 30 0 chr6 15990119 15990254 -166424988 - MER77 LTR ERV1 0 605 467 2126 92 7 26 chr6 15990258 15990561 -166424681 + AluSq SINE Alu 1 297 -16 267 217 0 0 chr6 15990561 15990621 -166424621 + GA-rich Low_complexity Low_complexity 1 60 0 1011 180 14 104 chr6 15990621 15990899 -166424343 - LTR37B LTR ERV1 -159 309 57 1397 169 33 113 chr6 15990923 15991320 -166423922 + MLT1A1 LTR MaLR 1 365 0 233 252 98 70 chr6 15992079 15992222 -166423020 - MER5A DNA MER1_type -24 165 19 860 225 107 0 chr6 15992492 15992670 -166422572 + MER58A DNA MER1_type 2 198 -26 1487 256 43 34 chr6 15992737 15992899 -166422343 + L1ME1 LINE L1 5259 5418 -748 2124 116 3 28 chr6 15992899 15993219 -166422023 + AluSx SINE Alu 1 312 0 1487 256 43 34 chr6 15993219 15993350 -166421892 + L1ME1 LINE L1 5418 5546 -620 2171 109 0 0 chr6 15993350 15993653 -166421589 - AluSx SINE Alu -9 303 1 1487 256 43 34 chr6 15993653 15993804 -166421438 + L1ME1 LINE L1 5546 5708 -458 929 112 0 8 chr6 15993825 15993959 -166421283 - FLAM_C SINE Alu -6 137 5 1692 187 111 28 chr6 15993964 15994256 -166420986 + L1ME1 LINE L1 5702 6041 -125 2086 126 7 0 chr6 15994256 15994557 -166420685 + AluSx SINE Alu 1 303 -9 1692 187 111 28 chr6 15994557 15994687 -166420555 + L1ME1 LINE L1 6041 6159 -7 1246 213 22 0 chr6 15994699 15994976 -166420266 + L1MC4 LINE L1 6935 7217 -825 1090 184 25 72 chr6 15994981 15995259 -166419983 + AluJo SINE Alu 1 265 -47 964 216 51 0 chr6 15995273 15995513 -166419729 + L1MC4a LINE L1 7127 7554 -441 1989 125 0 0 chr6 15995526 15995807 -166419435 + AluSx SINE Alu 1 281 -31 2406 97 132 5 chr6 15996907 15997287 -166417955 + MSTA LTR MaLR 1 428 0 3221 198 80 39 chr6 15999522 16000651 -166414591 + L1M3 LINE L1 4366 5555 -613 1144 157 44 39 chr6 16000651 16000711 -166414531 + AluJb SINE Alu 83 141 -171 2260 99 0 0 chr6 16000711 16001014 -166414228 + AluSq SINE Alu 1 303 -10 1144 157 44 39 chr6 16001014 16001182 -166414060 + AluJb SINE Alu 141 312 0 3735 149 135 34 chr6 16001523 16002869 -166412373 + pTR5 LTR ERV1 741 2606 0 2115 100 3 7 chr6 16003735 16004035 -166411207 + AluSq SINE Alu 1 299 -14 737 176 0 23 chr6 16004915 16005046 -166410196 - FLAM_C SINE Alu -3 130 3 2090 71 41 20 chr6 16005277 16005572 -166409670 + AluY SINE Alu 1 301 -10 2161 106 0 3 chr6 16005593 16005894 -166409348 + AluSx SINE Alu 1 300 -12 2052 121 3 0 chr6 16006450 16006747 -166408495 + AluSx SINE Alu 1 298 -14 519 274 92 24 chr6 16007839 16008003 -166407239 - MER69A DNA AcHobo -2 175 1 321 356 75 6 chr6 16008487 16008661 -166406581 + MIR3 SINE MIR 7 192 -16 304 219 12 37 chr6 16009675 16009757 -166405485 + MER116 DNA Mariner 1 80 0 1144 161 18 40 chr6 16009889 16010113 -166405129 + MER20 DNA MER1_type 1 219 0 231 200 0 0 chr6 16012001 16012041 -166403201 - MIR SINE MIR -101 161 122 2148 104 7 0 chr6 16012168 16012477 -166402765 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr6 16012582 16012610 -166402632 + (TG)n Simple_repeat Simple_repeat 1 28 0 2108 103 33 0 chr6 16012712 16013015 -166402227 + AluSx SINE Alu 1 313 0 2215 72 20 0 chr6 16013389 16013682 -166401560 + AluY SINE Alu 1 299 -12 2268 87 0 3 chr6 16014020 16014320 -166400922 + AluSq SINE Alu 1 299 -14 1681 135 7 4 chr6 16014430 16014728 -166400514 + AluJo SINE Alu 11 309 0 801 214 96 123 chr6 16014864 16015304 -166399938 + MER113 DNA MER1_type? 20 447 -74 2310 82 0 0 chr6 16015555 16015859 -166399383 - AluY SINE Alu -7 304 1 2211 113 0 0 chr6 16016611 16016920 -166398322 - AluSx SINE Alu -1 311 3 498 201 73 62 chr6 16017030 16017209 -166398033 - MER34B LTR ERV1 0 565 385 2212 105 0 0 chr6 16017220 16017516 -166397726 + AluSx SINE Alu 1 296 -16 759 203 0 0 chr6 16017779 16017907 -166397335 + FLAM_C SINE Alu 1 128 -5 911 127 0 15 chr6 16017971 16018105 -166397137 - FLAM_C SINE Alu -1 132 1 236 200 109 0 chr6 16018131 16018186 -166397056 - MER34C LTR ERV1 -485 100 40 255 61 0 0 chr6 16018504 16018537 -166396705 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 1880 129 4 0 chr6 16019335 16019638 -166395604 - AluSx SINE Alu 0 304 1 22 35 0 0 chr6 16019785 16019814 -166395428 + AT_rich Low_complexity Low_complexity 1 29 0 1212 249 90 21 chr6 16020495 16020929 -166394313 + MER110A LTR ERV1 1 464 -4 998 99 0 0 chr6 16021055 16021186 -166394056 + AluSq/x SINE Alu 1 131 -182 1981 128 10 0 chr6 16021193 16021319 -166393923 + AluSx SINE Alu 1 124 -188 279 0 0 0 chr6 16021319 16021350 -166393892 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1981 128 10 0 chr6 16021350 16021519 -166393723 + AluSx SINE Alu 124 299 -13 236 193 0 18 chr6 16021728 16021785 -166393457 - L1MA5 LINE L1 -2 6298 6243 * 922 140 9 9 chr6 16021762 16021933 -166393309 - L1MA5 LINE L1 -10 6302 6128 1448 184 44 0 chr6 16021935 16022207 -166393035 + AluJo SINE Alu 11 294 -18 5392 152 17 32 chr6 16022218 16023253 -166391989 - L1MA5 LINE L1 -152 6148 5146 2273 83 7 0 chr6 16023253 16023554 -166391688 - AluSc SINE Alu -6 303 1 5392 152 17 32 chr6 16023554 16023688 -166391554 - L1MA5 LINE L1 -1154 5146 5012 981 152 21 11 chr6 16023688 16023879 -166391363 - L1MC2 LINE L1 -15 6329 6137 2644 149 97 166 chr6 16023879 16023958 -166391284 - L1MC3 LINE L1 -191 7594 7511 381 43 0 0 chr6 16023958 16024005 -166391237 + (CA)n Simple_repeat Simple_repeat 2 48 0 1869 142 0 29 chr6 16024014 16024324 -166390918 - AluJb SINE Alu -10 302 2 2644 149 97 166 chr6 16024324 16024673 -166390569 - L1MC3 LINE L1 -282 7503 7131 267 267 0 13 chr6 16024673 16024748 -166390494 - MLT1F1 LTR MaLR -453 114 41 2644 149 97 166 chr6 16024748 16025132 -166390110 - L1MC3 LINE L1 -654 7131 6759 2034 102 7 0 chr6 16025338 16025623 -166389619 - AluSp SINE Alu -15 298 12 28 29 0 0 chr6 16025878 16025913 -166389329 + AT_rich Low_complexity Low_complexity 1 35 0 1562 159 43 40 chr6 16025913 16026214 -166389028 + AluJo SINE Alu 1 302 -10 970 219 4 62 chr6 16026219 16026461 -166388781 - MIR SINE MIR -27 235 8 2409 44 14 3 chr6 16026587 16026884 -166388358 - AluY SINE Alu -11 300 1 1665 162 10 0 chr6 16027341 16027637 -166387605 + AluSx SINE Alu 1 299 -13 1827 140 3 3 chr6 16028336 16028622 -166386620 + AluJb SINE Alu 1 286 -26 2097 93 17 0 chr6 16028627 16028917 -166386325 - AluSg SINE Alu -15 295 1 200 152 0 0 chr6 16029360 16029393 -166385849 - MIR SINE MIR -63 145 113 465 193 111 117 chr6 16029663 16029834 -166385408 - MER5A DNA MER1_type -14 175 6 2172 147 18 33 chr6 16029923 16030319 -166384923 + MLT1B LTR MaLR 1 390 0 238 253 207 23 chr6 16030363 16030450 -166384792 + MIR SINE MIR 33 135 -73 2159 108 0 0 chr6 16030559 16030855 -166384387 + AluSx SINE Alu 1 296 -16 390 347 103 35 chr6 16030893 16031233 -166384009 + L1ME LINE L1 61 423 -5647 2568 100 34 78 chr6 16031342 16031439 -166383803 + MSTC LTR MaLR 1 101 -327 1901 151 0 3 chr6 16031439 16031738 -166383504 + AluSx SINE Alu 1 298 -14 2568 100 34 78 chr6 16031738 16032088 -166383154 + MSTC LTR MaLR 101 428 0 1707 205 81 10 chr6 16032258 16032667 -166382575 + Charlie4a DNA MER1_type 17 454 -54 2035 120 17 0 chr6 16032669 16032970 -166382272 - AluSx SINE Alu -6 306 1 4888 83 8 67 chr6 16033475 16033660 -166381582 + LTR8 LTR ERV1 1 195 -496 1872 132 0 0 chr6 16033660 16033932 -166381310 + AluSx SINE Alu 28 299 -13 4888 83 8 67 chr6 16033932 16034480 -166380762 + LTR8 LTR ERV1 195 691 0 237 74 37 19 chr6 16034675 16034729 -166380513 + (TTATA)n Simple_repeat Simple_repeat 1 55 0 197 298 39 96 chr6 16034805 16034909 -166380333 + MIR3 SINE MIR 96 193 -15 1591 137 0 12 chr6 16035003 16035294 -166379948 - AluSx SINE Alu 0 331 44 1542 93 9 9 chr6 16035312 16035537 -166379705 - AluSc SINE Alu -2 307 83 1876 132 4 4 chr6 16036178 16036459 -166378783 - AluSp SINE Alu -32 281 1 801 121 7 54 chr6 16036821 16036970 -166378272 + FLAM_C SINE Alu 2 143 0 971 149 54 6 chr6 16037433 16037601 -166377641 - AluSg/x SINE Alu -3 307 132 2294 92 3 0 chr6 16037601 16037905 -166377337 - AluSp SINE Alu -7 306 2 183 156 0 0 chr6 16038208 16038240 -166377002 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1106 153 6 0 chr6 16038242 16038419 -166376823 - AluJo SINE Alu -30 282 105 244 154 39 58 chr6 16038422 16038474 -166376768 + HSMAR1 DNA Mariner 1 51 -1236 672 147 0 0 chr6 16038480 16038582 -166376660 - AluJo SINE Alu -210 102 1 2322 169 4 50 chr6 16038649 16039007 -166376235 + L1M3 LINE L1 5369 5703 -480 2111 107 7 0 chr6 16039007 16039307 -166375935 + AluSq SINE Alu 1 302 -11 2322 169 4 50 chr6 16039307 16039405 -166375837 + L1M3 LINE L1 5703 5804 -379 2051 102 6 22 chr6 16039420 16039735 -166375507 + AluY SINE Alu 1 310 -1 488 241 106 0 chr6 16039977 16040118 -166375124 + MER3 DNA MER1_type 5 160 -49 1004 144 11 17 chr6 16040118 16040299 -166374943 - AluSg/x SINE Alu -3 309 130 276 171 0 0 chr6 16040701 16040742 -166374500 - FLAM_A SINE Alu -68 64 24 2079 104 3 3 chr6 16040753 16041042 -166374200 - AluSx SINE Alu -23 289 1 610 39 0 0 chr6 16041204 16041281 -166373961 - AluS SINE Alu -234 78 2 1690 120 34 8 chr6 16041781 16042047 -166373195 - AluSx SINE Alu 0 312 40 2120 97 3 3 chr6 16042057 16042356 -166372886 - AluY SINE Alu -12 299 1 1619 115 11 65 chr6 16042562 16042840 -166372402 + LTR48B LTR ERV1 1 263 -381 249 25 0 0 chr6 16042829 16042869 -166372373 + Alu SINE Alu 262 301 0 * 907 120 8 0 chr6 16042907 16043032 -166372210 - FLAM_C SINE Alu -3 130 5 2552 49 0 0 chr6 16043185 16043490 -166371752 + AluY SINE Alu 1 305 -6 2035 62 12 4 chr6 16043490 16043748 -166371494 + AluY SINE Alu 38 297 -14 227 224 0 0 chr6 16044046 16044095 -166371147 + L2 LINE L2 3224 3272 0 413 278 77 35 chr6 16045567 16045736 -166369506 + MER5A DNA MER1_type 7 182 -7 717 136 0 0 chr6 16045743 16045846 -166369396 + AluJo SINE Alu 2 104 -208 581 155 25 1 chr6 16045846 16045962 -166369280 + MER41A LTR ERV1 3 127 -427 23 0 0 0 chr6 16046043 16046066 -166369176 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr6 16046082 16046121 -166369121 + AT_rich Low_complexity Low_complexity 1 39 0 2967 149 2 4 chr6 16046124 16046606 -166368636 + MER41B LTR ERV1 148 628 -7 812 212 20 10 chr6 16046606 16046809 -166368433 + AluJo SINE Alu 93 297 -15 265 222 111 71 chr6 16046974 16047073 -166368169 - MER5A DNA MER1_type -78 111 9 309 280 25 42 chr6 16047487 16047605 -166367637 - L2 LINE L2 -15 3257 3142 2316 87 7 0 chr6 16047964 16048273 -166366969 + AluSq SINE Alu 1 311 -2 24 0 0 0 chr6 16048308 16048332 -166366910 + AT_rich Low_complexity Low_complexity 1 24 0 1374 229 41 85 chr6 16048342 16048909 -166366333 - MER34 LTR ERV1 0 542 1 2166 227 66 43 chr6 16049261 16049834 -166365408 + Zaphod DNA AcHobo 185 779 -3252 2053 114 13 0 chr6 16049834 16050141 -166365101 - AluSx SINE Alu -1 311 1 2166 227 66 43 chr6 16050141 16050282 -166364960 + Zaphod DNA AcHobo 779 915 -3116 1538 150 24 0 chr6 16050282 16050528 -166364714 - Tigger2 DNA MER2_type 0 2718 2467 1476 74 0 15 chr6 16050587 16050790 -166364452 - AluY SINE Alu -109 202 3 280 237 26 0 chr6 16050899 16050975 -166364267 + GA-rich Low_complexity Low_complexity 1 78 0 1065 82 0 0 chr6 16051210 16051344 -166363898 + AluSq/x SINE Alu 1 134 -179 2009 99 10 7 chr6 16051346 16051640 -166363602 + AluSx SINE Alu 1 295 -17 289 293 196 0 chr6 16052028 16052161 -166363081 + MIR3 SINE MIR 41 199 -9 294 209 38 67 chr6 16052208 16052313 -166362929 + LTR48B LTR ERV1 1 102 -542 811 205 97 62 chr6 16052313 16052572 -166362670 + MER39 LTR ERV1 325 592 -115 828 138 0 22 chr6 16052572 16052710 -166362532 - FLAM_C SINE Alu -6 137 3 364 202 57 57 chr6 16052711 16052835 -166362407 + MER39 LTR ERV1 417 705 -2 2215 116 0 0 chr6 16053524 16053835 -166361407 + AluSq SINE Alu 1 311 -2 1919 113 55 0 chr6 16054060 16054353 -166360889 + AluSx SINE Alu 1 309 -3 1846 131 44 0 chr6 16055028 16055490 -166359752 + AluSx SINE Alu 1 475 0 2259 103 0 0 chr6 16056212 16056522 -166358720 + AluSx SINE Alu 3 312 0 227 143 71 36 chr6 16056736 16056792 -166358450 - MER20B DNA MER1_type -712 71 14 2286 89 0 3 chr6 16056875 16057178 -166358064 + AluSc SINE Alu 1 302 -7 1975 133 20 0 chr6 16057510 16057804 -166357438 - AluSx SINE Alu -12 300 1 803 57 0 9 chr6 16057879 16057984 -166357258 + AluSq/x SINE Alu 2 105 -207 967 165 21 0 chr6 16058183 16058371 -166356871 + AluSc SINE Alu 96 287 -22 1095 114 6 6 chr6 16058459 16058626 -166356616 + AluSc SINE Alu 128 294 -15 2014 122 0 41 chr6 16058693 16058828 -166356414 + AluSg SINE Alu 1 140 -170 2342 84 3 0 chr6 16058828 16059138 -166356104 + AluSp SINE Alu 1 311 -2 2014 122 0 41 chr6 16059138 16059322 -166355920 + AluSg SINE Alu 140 307 -3 1033 164 27 170 chr6 16059362 16059692 -166355550 - MLT1A1 LTR MaLR 0 365 83 3242 110 26 46 chr6 16059693 16059762 -166355480 + L1MB2 LINE L1 5631 5700 -471 1986 141 20 0 chr6 16059762 16060068 -166355174 - AluSx SINE Alu 0 312 1 3242 110 26 46 chr6 16060068 16060497 -166354745 + L1MB2 LINE L1 5700 6120 -51 2196 84 6 26 chr6 16060497 16060808 -166354434 + AluSx SINE Alu 1 305 -7 3242 110 26 46 chr6 16060808 16060853 -166354389 + L1MB2 LINE L1 6120 6164 -7 189 372 13 0 chr6 16060887 16060965 -166354277 - L2 LINE L2 -214 3058 2980 346 262 111 23 chr6 16061356 16061528 -166353714 + MER2 DNA MER2_type 159 345 0 189 0 0 0 chr6 16061849 16061870 -166353372 + (A)n Simple_repeat Simple_repeat 1 21 0 2234 145 60 0 chr6 16062095 16062475 -166352767 + MER57A LTR ERV1 1 403 0 1278 128 0 5 chr6 16062646 16062842 -166352400 - AluSg SINE Alu -2 308 114 2078 179 74 31 chr6 16062842 16063300 -166351942 - LTR2B LTR ERV1 0 490 13 576 97 269 0 chr6 16063305 16063398 -166351844 - AluSg SINE Alu -190 120 3 546 199 226 22 chr6 16063518 16063699 -166351543 - MIR SINE MIR -3 259 42 1553 224 23 11 chr6 16063699 16064047 -166351195 - MLT1C LTR MaLR 0 467 116 2138 101 13 0 chr6 16064047 16064353 -166350889 - AluSp SINE Alu -3 310 1 1350 195 3 69 chr6 16064371 16064705 -166350537 - AluJo SINE Alu 0 312 1 3477 182 15 24 chr6 16064715 16065008 -166350234 - L1MB4 LINE L1 -1 6179 5885 1967 99 49 0 chr6 16065008 16065292 -166349950 - AluSq SINE Alu -12 301 4 3477 182 15 24 chr6 16065292 16065712 -166349530 - L1MB4 LINE L1 -295 5885 5472 726 183 7 29 chr6 16065712 16065849 -166349393 - FLAM_C SINE Alu -8 135 2 1557 155 9 51 chr6 16065883 16066199 -166349043 + AluJo SINE Alu 1 303 -9 279 96 0 159 chr6 16066216 16066277 -166348965 - MLT1C LTR MaLR -265 125 80 1855 76 13 83 chr6 16066277 16066579 -166348663 - AluSp SINE Alu -32 281 1 279 96 0 159 chr6 16066579 16066594 -166348648 - MLT1C LTR MaLR -310 80 64 2291 104 0 0 chr6 16066815 16067124 -166348118 - AluSg SINE Alu -1 309 1 2052 109 27 0 chr6 16067941 16068235 -166347007 - AluSx SINE Alu -8 304 3 2063 75 0 0 chr6 16068324 16068590 -166346652 - AluSc SINE Alu -12 297 32 1641 135 49 118 chr6 16068634 16069065 -166346177 + MER57A LTR ERV1 3 403 0 813 198 169 21 chr6 16069248 16069332 -166345910 + AluJo SINE Alu 11 81 -231 2053 103 7 3 chr6 16069332 16069622 -166345620 - AluSp SINE Alu -22 291 1 813 198 169 21 chr6 16069622 16069641 -166345601 + AluJo SINE Alu 81 96 -216 216 0 0 0 chr6 16069641 16069665 -166345577 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 813 198 169 21 chr6 16069665 16069803 -166345439 + AluJo SINE Alu 96 289 -23 2070 132 0 13 chr6 16069958 16070268 -166344974 + AluJo SINE Alu 3 308 -4 313 270 131 7 chr6 16071277 16071415 -166343827 - MIR SINE MIR -80 128 18 2604 153 2 42 chr6 16072656 16072699 -166342543 - MER50 LTR ERV1 -25 709 666 2045 116 3 0 chr6 16072699 16073001 -166342241 - AluSx SINE Alu -9 303 1 2604 153 2 42 chr6 16073001 16073408 -166341834 - MER50 LTR ERV1 -68 666 277 1762 95 28 60 chr6 16073464 16073622 -166341620 - MER50 LTR ERV1 -459 275 127 1729 136 33 7 chr6 16073622 16073925 -166341317 - AluSc SINE Alu 0 310 1 1762 95 28 60 chr6 16073925 16074049 -166341193 - MER50 LTR ERV1 -607 127 1 294 194 0 0 chr6 16074882 16074954 -166340288 + (TG)n Simple_repeat Simple_repeat 2 73 0 1712 152 11 105 chr6 16074956 16075338 -166339904 - MER7A DNA MER2_type -1 345 2 398 313 65 13 chr6 16075354 16075584 -166339658 - L1MC4 LINE L1 -112 7930 7689 2266 98 7 0 chr6 16075737 16076042 -166339200 + AluSq SINE Alu 1 307 -6 194 281 0 94 chr6 16076307 16076372 -166338870 + L2 LINE L2 3227 3282 -31 2239 98 7 0 chr6 16076372 16076678 -166338564 + AluSx SINE Alu 3 310 -2 194 281 0 94 chr6 16076678 16076708 -166338534 + L2 LINE L2 3282 3313 0 315 0 0 0 chr6 16076809 16076844 -166338398 + (TA)n Simple_repeat Simple_repeat 2 36 0 1840 114 96 0 chr6 16077586 16077866 -166337376 - AluSg SINE Alu -3 307 1 23 33 0 0 chr6 16077925 16077955 -166337287 + AT_rich Low_complexity Low_complexity 1 30 0 780 200 7 7 chr6 16077955 16078100 -166337142 - FRAM SINE Alu -31 145 1 337 353 43 0 chr6 16079153 16079292 -166335950 + MIR SINE MIR 88 232 -30 415 156 0 0 chr6 16079318 16079382 -166335860 - MSTA LTR MaLR 0 428 365 580 167 0 0 chr6 16079382 16079472 -166335770 + AluJb SINE Alu 210 299 -13 581 250 0 9 chr6 16079484 16079644 -166335598 + FLAM_A SINE Alu 2 160 0 2703 138 40 26 chr6 16079664 16080123 -166335119 + L1MB2 LINE L1 5657 6125 -46 2106 105 7 0 chr6 16080123 16080419 -166334823 - AluSp SINE Alu -15 298 1 2703 138 40 26 chr6 16080419 16080453 -166334789 + L1MB2 LINE L1 6125 6157 -14 2153 105 0 13 chr6 16080589 16080895 -166334347 + AluSx SINE Alu 2 303 -9 24 103 0 0 chr6 16080941 16081028 -166334214 + AT_rich Low_complexity Low_complexity 1 87 0 1630 190 0 3 chr6 16081206 16081506 -166333736 - AluJb SINE Alu -13 299 1 209 256 227 64 chr6 16082741 16082913 -166332329 - L2 LINE L2 -13 3300 3101 745 145 0 0 chr6 16083019 16083136 -166332106 + FLAM_C SINE Alu 27 143 0 2028 123 3 0 chr6 16083149 16083442 -166331800 + AluSx SINE Alu 1 294 -18 820 206 50 0 chr6 16083455 16083635 -166331607 + AluSg/x SINE Alu 121 309 -1 795 271 48 0 chr6 16083655 16083906 -166331336 - MLT1J LTR MaLR -248 263 1 275 300 29 73 chr6 16084353 16084512 -166330730 + MIR SINE MIR 33 183 -77 1257 187 37 95 chr6 16084532 16084601 -166330641 - MLT1E3 LTR MaLR 0 624 553 2354 63 0 3 chr6 16084601 16084900 -166330342 + AluY SINE Alu 1 298 -13 1797 117 0 54 chr6 16084908 16085103 -166330139 - AluJb SINE Alu 0 317 144 2398 67 0 13 chr6 16085103 16085418 -166329824 - AluY SINE Alu 0 311 1 1797 117 0 54 chr6 16085418 16085555 -166329687 - AluJb SINE Alu -173 144 1 1257 187 37 95 chr6 16085555 16085823 -166329419 - MLT1E3 LTR MaLR -78 546 297 711 121 0 0 chr6 16085923 16086022 -166329220 + AluJ/FLAM SINE Alu 2 100 -212 393 253 149 32 chr6 16086084 16086238 -166329004 + MIR SINE MIR 20 191 -71 192 217 0 0 chr6 16086339 16086385 -166328857 + CT-rich Low_complexity Low_complexity 4 49 0 2635 94 0 121 chr6 16086434 16086518 -166328724 - Tigger2 DNA MER2_type -1 2717 2624 1714 170 0 3 chr6 16086518 16086812 -166328430 - AluJb SINE Alu -19 293 1 2635 94 0 121 chr6 16086812 16086824 -166328418 - Tigger2 DNA MER2_type -94 2624 2612 2066 105 3 3 chr6 16086824 16087120 -166328122 - AluSg SINE Alu -14 296 1 2635 94 0 121 chr6 16087120 16087419 -166327823 - Tigger2 DNA MER2_type -106 2612 2386 2288 76 0 10 chr6 16087419 16087733 -166327509 - AluY SINE Alu 0 311 1 2635 94 0 121 chr6 16087733 16087813 -166327429 - Tigger2 DNA MER2_type -332 2386 2298 490 100 0 14 chr6 16087819 16087889 -166327353 - Tigger2 DNA MER2_type -2649 69 1 1595 152 44 34 chr6 16089043 16089340 -166325902 - AluJo SINE Alu -11 301 2 667 229 0 0 chr6 16089423 16089541 -166325701 + FLAM_A SINE Alu 5 122 -11 2196 90 3 0 chr6 16089544 16089845 -166325397 - AluSq SINE Alu -11 302 1 27 0 0 0 chr6 16089845 16089872 -166325370 + AT_rich Low_complexity Low_complexity 1 27 0 340 247 60 73 chr6 16090035 16090185 -166325057 - MLT1J LTR MaLR 0 511 303 * 445 275 140 17 chr6 16090182 16090360 -166324882 - MLT1J LTR MaLR -311 200 1 412 329 71 6 chr6 16090478 16090648 -166324594 + MIR3 SINE MIR 18 198 -10 680 108 0 0 chr6 16090939 16091032 -166324210 - MER46B DNA MER2_type 0 236 144 349 126 78 6 chr6 16091032 16091199 -166324043 + (TA)n Simple_repeat Simple_repeat 2 180 0 1601 109 90 0 chr6 16091201 16091457 -166323785 - MER46B DNA MER2_type -82 154 1 378 100 0 33 chr6 16091409 16091469 -166323773 + MER46A DNA MER2_type 97 154 -82 * 1679 168 3 23 chr6 16091589 16091898 -166323344 - AluJo SINE Alu -9 303 1 283 86 0 0 chr6 16092208 16092243 -166322999 + U2 snRNA snRNA 1 35 -153 186 246 29 29 chr6 16092382 16092451 -166322791 - MIR SINE MIR -19 243 175 934 251 81 79 chr6 16092484 16092574 -166322668 + MLT1J LTR MaLR 17 105 -406 2127 90 0 14 chr6 16092574 16092897 -166322345 - AluSq SINE Alu 0 319 1 934 251 81 79 chr6 16092897 16093299 -166321943 + MLT1J LTR MaLR 105 511 0 1711 149 0 43 chr6 16093331 16093632 -166321610 + AluJo SINE Alu 1 288 -24 317 205 181 0 chr6 16093648 16093731 -166321511 - MIR SINE MIR -124 138 41 1952 132 3 7 chr6 16094709 16095004 -166320238 - AluSx SINE Alu -18 294 1 805 306 113 21 chr6 16095041 16095476 -166319766 + LTR33 LTR ERVL 40 514 -7 1837 107 28 77 chr6 16095647 16095785 -166319457 + AluSx SINE Alu 1 144 -168 1860 115 30 27 chr6 16095785 16096081 -166319161 + AluSx SINE Alu 3 299 -13 1837 107 28 77 chr6 16096081 16096269 -166318973 + AluSx SINE Alu 144 311 -1 2338 156 98 48 chr6 16097115 16097193 -166318049 + L1MB2 LINE L1 5587 5660 -511 2377 63 0 7 chr6 16097193 16097492 -166317750 + AluY SINE Alu 1 297 -14 2325 87 0 3 chr6 16097500 16097809 -166317433 + AluSg SINE Alu 1 308 -2 2338 156 98 48 chr6 16097809 16098130 -166317112 + L1MB2 LINE L1 5666 6029 -142 2151 125 30 25 chr6 16098130 16098497 -166316745 + L1PA14 LINE L1 5792 6160 -1 2338 156 98 48 chr6 16098497 16098605 -166316637 + L1MB2 LINE L1 6029 6130 -41 2197 109 0 10 chr6 16098611 16098923 -166316319 + AluSx SINE Alu 4 312 0 259 130 87 0 chr6 16098924 16098970 -166316272 + L1MB2 LINE L1 6115 6164 -7 249 269 192 0 chr6 16098980 16099058 -166316184 + MIR SINE MIR 159 251 -11 1241 196 51 75 chr6 16099232 16099604 -166315638 + MLT1A1 LTR MaLR 3 365 0 278 352 0 0 chr6 16099806 16099897 -166315345 - L2 LINE L2 0 3313 3223 2189 87 0 20 chr6 16099897 16100197 -166315045 + AluSq SINE Alu 1 294 -19 2156 100 0 10 chr6 16100520 16100820 -166314422 - AluSg SINE Alu -13 297 1 2156 94 3 3 chr6 16101360 16101658 -166313584 + AluSx SINE Alu 1 298 -14 367 95 108 27 chr6 16102072 16102146 -166313096 - MADE1 DNA Mariner 0 80 1 * 1054 171 87 66 chr6 16102144 16102166 -166313076 - MER33 DNA MER1_type -2278 307 287 1867 124 52 0 chr6 16102166 16102457 -166312785 - AluSq SINE Alu -7 306 1 1054 171 87 66 chr6 16102457 16102720 -166312522 - MER33 DNA MER1_type -2298 287 16 294 284 108 34 chr6 16102724 16102872 -166312370 + MIR3 SINE MIR 49 207 -1 333 208 104 66 chr6 16102949 16103055 -166312187 - L1ME4a LINE L1 -3 6118 6009 793 173 0 0 chr6 16103077 16103204 -166312038 + FLAM_A SINE Alu 1 127 -6 415 207 102 15 chr6 16104760 16104775 -166310467 - MLT1A2 LTR MaLR -232 158 146 2125 69 35 0 chr6 16104775 16105064 -166310178 + AluSx SINE Alu 1 299 -13 415 207 102 15 chr6 16105064 16105175 -166310067 - MLT1A2 LTR MaLR -244 146 42 246 279 36 36 chr6 16105175 16105286 -166309956 + MER34B LTR ERV1 5 115 -450 216 97 0 0 chr6 16105616 16105647 -166309595 + (TA)n Simple_repeat Simple_repeat 1 31 0 363 148 102 45 chr6 16105651 16105739 -166309503 + MER34 LTR ERV1 450 542 0 476 129 165 0 chr6 16106111 16106196 -166309046 + MER41C LTR ERV1 1 99 -455 2118 79 18 0 chr6 16106196 16106473 -166308769 - AluSq SINE Alu -2 311 30 1447 101 5 19 chr6 16106473 16106680 -166308562 - AluSx SINE Alu -108 204 1 3722 120 0 11 chr6 16106686 16107234 -166308008 + MER41B LTR ERV1 94 635 0 2008 115 10 22 chr6 16107559 16107873 -166307369 + AluSq SINE Alu 1 310 -3 356 0 23 0 chr6 16107930 16107974 -166307268 + (CA)n Simple_repeat Simple_repeat 1 45 0 242 222 0 19 chr6 16108680 16108734 -166306508 + CT-rich Low_complexity Low_complexity 5 57 0 836 178 24 24 chr6 16109037 16109206 -166306036 + MER20B DNA MER1_type 17 185 -34 2433 77 0 0 chr6 16109209 16109521 -166305721 + AluSx SINE Alu 1 312 0 2412 71 3 0 chr6 16109644 16109955 -166305287 + AluSq SINE Alu 2 313 0 230 248 173 45 chr6 16110032 16110165 -166305077 - MIR SINE MIR -82 180 31 2015 120 0 0 chr6 16110320 16110633 -166304609 + AluSc SINE Alu 1 309 0 2373 71 0 0 chr6 16110737 16111045 -166304197 + AluY SINE Alu 1 308 -3 1030 57 0 0 chr6 16111058 16111181 -166304061 + AluSq/x SINE Alu 1 123 -190 635 111 0 11 chr6 16111188 16111278 -166303964 + L1MD1 LINE L1 5504 5592 -767 1959 93 30 0 chr6 16111282 16111550 -166303692 + AluSg SINE Alu 1 276 -34 192 40 0 0 chr6 16111552 16111577 -166303665 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1198 174 0 43 chr6 16111603 16111838 -166303404 - AluJo SINE Alu -32 280 56 2248 176 36 38 chr6 16111841 16111878 -166303364 + L1MD1 LINE L1 5576 5612 -630 2028 119 0 13 chr6 16111878 16112180 -166303062 + AluSg SINE Alu 1 298 -12 2248 176 36 38 chr6 16112180 16112613 -166302629 + L1MD1 LINE L1 5612 6045 -197 1197 90 0 0 chr6 16112618 16112774 -166302468 + AluSg SINE Alu 49 204 -106 1039 187 36 0 chr6 16112775 16112994 -166302248 + L1MD1 LINE L1 6009 6235 -7 194 0 39 0 chr6 16112994 16113020 -166302222 + (TA)n Simple_repeat Simple_repeat 1 27 0 200 151 0 38 chr6 16113020 16113043 -166302199 + (TAGA)n Simple_repeat Simple_repeat 1 23 -28 2119 128 3 0 chr6 16113043 16113348 -166301894 + AluJo SINE Alu 1 306 -6 200 151 0 38 chr6 16113348 16113377 -166301865 + (TAGA)n Simple_repeat Simple_repeat 23 51 0 240 345 73 0 chr6 16114105 16114215 -166301027 - L2 LINE L2 -10 3262 3145 793 306 78 0 chr6 16114250 16114469 -166300773 + MIR SINE MIR 15 250 -12 881 217 116 98 chr6 16114556 16114913 -166300329 - MER4C LTR ERV1 0 695 156 1234 160 14 0 chr6 16114913 16115132 -166300110 + AluJb SINE Alu 84 305 -7 1220 148 3 172 chr6 16115137 16115521 -166299721 - MER4A LTR ERV1 -345 319 1 2403 52 0 16 chr6 16116280 16116588 -166298654 + AluY SINE Alu 1 303 -8 1780 173 0 6 chr6 16116819 16117131 -166298111 + AluJb SINE Alu 2 311 -1 5111 81 25 23 chr6 16117160 16117698 -166297544 - LTR8 LTR ERV1 0 691 150 2062 119 3 3 chr6 16117698 16118008 -166297234 + AluSx SINE Alu 1 310 -2 5111 81 25 23 chr6 16118008 16118159 -166297083 - LTR8 LTR ERV1 -541 150 1 297 241 35 11 chr6 16118526 16118613 -166296629 + GA-rich Low_complexity Low_complexity 5 93 0 820 218 33 90 chr6 16119510 16119679 -166295563 - MLT1B LTR MaLR -4 361 187 1200 181 52 38 chr6 16119679 16119967 -166295275 - AluJo SINE Alu -16 296 5 820 218 33 90 chr6 16119967 16120134 -166295108 - MLT1B LTR MaLR -178 187 12 1559 130 16 4 chr6 16120139 16120386 -166294856 - AluSq SINE Alu -63 250 1 3494 141 65 14 chr6 16120397 16120979 -166294263 - LTR9 LTR ERV1 0 612 1 693 161 0 9 chr6 16120993 16121105 -166294137 + AluJo/FLAM SINE Alu 9 119 -193 2102 123 0 0 chr6 16121107 16121400 -166293842 - AluSx SINE Alu -19 293 1 261 180 0 0 chr6 16121713 16121763 -166293479 + T-rich Low_complexity Low_complexity 1 50 0 196 255 0 0 chr6 16121865 16121916 -166293326 + L2 LINE L2 3263 3313 0 195 161 0 0 chr6 16122260 16122291 -166292951 - L2 LINE L2 -11 3261 3231 246 344 75 11 chr6 16122292 16122385 -166292857 - L2 LINE L2 -6 3307 3209 1621 183 0 22 chr6 16122568 16122880 -166292362 + AluJo SINE Alu 2 306 -6 2201 75 3 0 chr6 16122908 16123214 -166292028 + AluSp SINE Alu 1 307 0 659 188 0 0 chr6 16123214 16123331 -166291911 + AluSg/x SINE Alu 184 300 -10 302 239 14 0 chr6 16123953 16124024 -166291218 + MER116 DNA Mariner 5 76 -4 1049 156 0 0 chr6 16124072 16124239 -166291003 - FRAM SINE Alu -10 166 1 463 257 223 0 chr6 16124239 16124414 -166290828 - MIR SINE MIR -37 225 12 1714 152 14 3 chr6 16124678 16124968 -166290274 - AluJb SINE Alu -8 304 12 262 254 123 57 chr6 16125153 16125275 -166289967 - MIR SINE MIR -82 180 51 1889 139 20 3 chr6 16126029 16126324 -166288918 - AluJo SINE Alu -10 302 3 2063 116 3 19 chr6 16126461 16126779 -166288463 + AluSq SINE Alu 1 313 0 1711 147 0 0 chr6 16127063 16127329 -166287913 - AluSq SINE Alu -47 266 1 189 0 0 0 chr6 16127337 16127358 -166287884 + (T)n Simple_repeat Simple_repeat 1 21 0 718 172 16 0 chr6 16127370 16127492 -166287750 - FLAM_A SINE Alu -9 124 1 2137 104 10 0 chr6 16127572 16127870 -166287372 + AluSg SINE Alu 1 301 -9 1928 125 0 0 chr6 16127871 16128150 -166287092 - AluSx SINE Alu -31 281 3 435 261 72 31 chr6 16128165 16128360 -166286882 - MER113 DNA MER1_type? -209 312 110 278 290 139 16 chr6 16128362 16128607 -166286635 - L1MC5 LINE L1 -72 7889 7615 253 144 45 126 chr6 16128627 16128738 -166286504 - MER113 DNA MER1_type? -388 133 32 1315 86 0 0 chr6 16128795 16128969 -166286273 + AluSq SINE Alu 138 311 -2 2043 137 0 3 chr6 16129062 16129369 -166285873 + AluSx SINE Alu 1 306 -6 301 209 0 15 chr6 16129578 16129645 -166285597 - Tigger5 DNA MER2_type -16 2307 2242 * 435 200 0 0 chr6 16129635 16129710 -166285532 + Tigger5 DNA MER2_type 2242 2316 -7 369 157 129 0 chr6 16129713 16129783 -166285459 - Tigger5 DNA MER2_type -2244 79 1 518 305 14 7 chr6 16129866 16130007 -166285235 + MIR SINE MIR 26 167 -95 2136 113 0 3 chr6 16130322 16130622 -166284620 + AluSq SINE Alu 1 299 -14 326 224 0 0 chr6 16130817 16130884 -166284358 + MIR SINE MIR 196 262 0 251 169 15 46 chr6 16131194 16131259 -166283983 + LTR29 LTR ERV1 137 199 -423 * 1505 238 88 33 chr6 16131246 16131737 -166283505 + LTR48B LTR ERV1 91 608 -36 199 176 20 59 chr6 16132244 16132295 -166282947 - MIR3 SINE MIR 0 208 160 432 241 44 79 chr6 16132350 16132468 -166282774 + L1ME4a LINE L1 5576 5684 -437 2098 98 14 14 chr6 16132468 16132764 -166282478 - AluSx SINE Alu -16 296 1 432 241 44 79 chr6 16132764 16132873 -166282369 + L1ME4a LINE L1 5684 5795 -326 2036 117 0 0 chr6 16132917 16133199 -166282043 + AluSx SINE Alu 1 282 -30 227 236 75 38 chr6 16133390 16133496 -166281746 + L1ME4a LINE L1 6012 6121 0 1266 258 79 12 chr6 16133711 16134129 -166281113 + MLT1C LTR MaLR 22 467 0 888 158 48 0 chr6 16134254 16134400 -166280842 + AluJb SINE Alu 141 293 -19 2282 83 0 6 chr6 16134420 16134733 -166280509 + AluY SINE Alu 1 311 0 2133 65 8 0 chr6 16135541 16135803 -166279439 + HERVL LTR ERVL 4375 4638 -1016 2038 107 6 38 chr6 16136356 16136675 -166278567 - AluSx SINE Alu -3 309 1 234 0 0 0 chr6 16136675 16136701 -166278541 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 889 139 6 44 chr6 16136701 16136859 -166278383 - FRAM SINE Alu -29 147 1 2203 104 0 7 chr6 16137252 16137559 -166277683 + AluSx SINE Alu 1 305 -7 2039 127 0 0 chr6 16138720 16139019 -166276223 + AluSq SINE Alu 2 300 -13 494 76 25 0 chr6 16139021 16139100 -166276142 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 262 359 28 9 chr6 16139144 16139250 -166275992 + MIR SINE MIR 20 127 -81 8429 112 49 42 chr6 16139543 16140119 -166275123 - Tigger1 DNA MER2_type 0 2418 1848 2174 92 3 3 chr6 16140119 16140413 -166274829 + AluSg SINE Alu 1 294 -16 2152 122 3 0 chr6 16140423 16140734 -166274508 + AluSx SINE Alu 1 312 0 8429 112 49 42 chr6 16140734 16140842 -166274400 - Tigger1 DNA MER2_type -578 1840 1734 1721 139 51 14 chr6 16140842 16141136 -166274106 - AluSq SINE Alu -8 305 1 8429 112 49 42 chr6 16141136 16141846 -166273396 - Tigger1 DNA MER2_type -684 1734 1002 22 0 0 0 chr6 16141846 16141868 -166273374 + AT_rich Low_complexity Low_complexity 1 22 0 2155 128 0 0 chr6 16141910 16142259 -166272983 - AluSx SINE Alu 0 349 1 2148 98 0 25 chr6 16142278 16142596 -166272646 - AluSg SINE Alu 0 310 1 369 0 0 0 chr6 16142596 16142637 -166272605 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 201 74 0 0 chr6 16142653 16142680 -166272562 + (T)n Simple_repeat Simple_repeat 1 27 0 236 224 0 0 chr6 16142680 16142729 -166272513 - Tigger1 DNA MER2_type -1407 1011 963 735 84 0 0 chr6 16142730 16142825 -166272417 + AluSp SINE Alu 2 96 -217 2073 87 35 0 chr6 16142825 16143114 -166272128 + AluSp SINE Alu 1 299 -14 1479 128 4 0 chr6 16143114 16143340 -166271902 + AluSp SINE Alu 82 309 -4 5674 128 15 81 chr6 16143343 16144121 -166271121 - Tigger1 DNA MER2_type -1448 970 143 1758 156 7 3 chr6 16144121 16144410 -166270832 + AluJb SINE Alu 1 290 -22 1993 106 3 11 chr6 16144417 16144699 -166270543 + AluSx SINE Alu 1 280 -32 222 23 45 45 chr6 16144700 16144744 -166270498 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5674 128 15 81 chr6 16144744 16144936 -166270306 - Tigger1 DNA MER2_type -2281 137 59 180 0 0 0 chr6 16144936 16144956 -166270286 + (GA)n Simple_repeat Simple_repeat 2 21 0 5674 128 15 81 chr6 16144956 16145012 -166270230 - Tigger1 DNA MER2_type -2359 59 1 902 193 17 80 chr6 16145429 16145668 -166269574 - MLT1A2 LTR MaLR 0 374 151 655 169 14 68 chr6 16145674 16145822 -166269420 - L1PA16 LINE L1 -22 6144 6005 722 181 12 50 chr6 16145827 16145848 -166269394 - MLT1A2 LTR MaLR -211 154 134 1867 181 48 14 chr6 16145848 16146201 -166269041 - MLT1A1 LTR MaLR 0 365 1 722 181 12 50 chr6 16146201 16146339 -166268903 - MLT1A2 LTR MaLR -231 134 1 211 256 336 40 chr6 16146339 16146464 -166268778 - MIR SINE MIR -99 163 2 2015 138 0 3 chr6 16146517 16146829 -166268413 + AluSx SINE Alu 1 311 -1 2191 86 0 13 chr6 16146865 16147166 -166268076 + AluSq SINE Alu 1 297 -16 953 211 54 5 chr6 16147200 16147404 -166267838 - MLT1C LTR MaLR -61 406 193 2243 119 0 0 chr6 16147444 16147756 -166267486 - AluSx SINE Alu 0 312 1 535 292 149 14 chr6 16147919 16148207 -166267035 - L2 LINE L2 -3 3269 2943 2166 108 3 0 chr6 16148266 16148573 -166266669 - AluSx SINE Alu -4 308 1 1606 158 70 0 chr6 16148576 16148861 -166266381 - AluJb SINE Alu -7 305 1 583 289 62 9 chr6 16149356 16149581 -166265661 + MER46C DNA MER2_type 3 239 -99 1621 183 0 3 chr6 16149977 16150261 -166264981 + AluJb SINE Alu 2 284 -28 787 174 54 27 chr6 16150293 16150442 -166264800 - FRAM SINE Alu -23 153 1 183 317 92 49 chr6 16150451 16150615 -166264627 + MIR SINE MIR 28 198 -64 1779 149 13 19 chr6 16150771 16151079 -166264163 - AluSx SINE Alu -6 306 1 26 0 0 0 chr6 16151084 16151110 -166264132 + AT_rich Low_complexity Low_complexity 1 26 0 816 115 0 31 chr6 16151110 16151240 -166264002 - FLAM_C SINE Alu -17 126 1 2396 53 0 13 chr6 16151358 16151662 -166263580 + AluY SINE Alu 1 300 -11 898 92 59 59 chr6 16151813 16151965 -166263277 - THE1C LTR MaLR -223 152 1 184 300 17 33 chr6 16152241 16152301 -166262941 + MER5A DNA MER1_type 84 142 -47 838 283 25 18 chr6 16152944 16153209 -166262033 + L2 LINE L2 3031 3300 -13 222 118 0 0 chr6 16153209 16153243 -166261999 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 838 283 25 18 chr6 16153243 16153256 -166261986 + L2 LINE L2 3300 3311 -2 284 272 136 22 chr6 16153967 16154151 -166261091 + MLT1K LTR MaLR 316 520 -68 231 36 0 0 chr6 16154154 16154182 -166261060 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1950 109 3 20 chr6 16154184 16154341 -166260901 - AluY SINE Alu -22 289 138 2440 57 0 13 chr6 16154341 16154656 -166260586 - AluY SINE Alu 0 311 1 1950 109 3 20 chr6 16154656 16154792 -166260450 - AluY SINE Alu -173 138 1 1834 140 18 0 chr6 16154798 16155084 -166260158 - AluSx SINE Alu -18 294 4 243 0 0 0 chr6 16155769 16155796 -166259446 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1979 132 6 28 chr6 16155800 16156118 -166259124 - AluSx SINE Alu -1 311 1 678 163 0 16 chr6 16156179 16156302 -166258940 - L1M1 LINE L1 -7431 134 14 2289 100 125 31 chr6 16156776 16157167 -166258075 + MSTA LTR MaLR 1 428 0 1029 275 123 37 chr6 16157167 16157713 -166257529 + MLT1L LTR MaLR 18 610 -5 331 184 103 11 chr6 16157728 16157815 -166257427 + MIR SINE MIR 158 252 -10 276 130 0 0 chr6 16158566 16158612 -166256630 + (CA)n Simple_repeat Simple_repeat 1 46 0 191 175 0 0 chr6 16159403 16159443 -166255799 + MIR SINE MIR 167 206 -56 348 153 0 111 chr6 16159539 16159611 -166255631 - AluJ/FLAM SINE Alu -238 64 1 2062 134 0 0 chr6 16159706 16160011 -166255231 - AluSx SINE Alu -7 305 1 1704 194 35 65 chr6 16161086 16161225 -166254017 - MLT1C LTR MaLR -6 461 319 3423 123 39 10 chr6 16161225 16161737 -166253505 - MER1A DNA MER1_type 0 527 1 1704 194 35 65 chr6 16161737 16162028 -166253214 - MLT1C LTR MaLR -148 319 43 1454 167 137 44 chr6 16162028 16162219 -166253023 - MLT1A2 LTR MaLR 0 374 202 2156 110 0 0 chr6 16162219 16162519 -166252723 + AluSx SINE Alu 1 300 -12 1454 167 137 44 chr6 16162519 16162669 -166252573 - MLT1A2 LTR MaLR -172 202 1 1704 194 35 65 chr6 16162669 16162695 -166252547 - MLT1C LTR MaLR -424 43 18 192 254 18 0 chr6 16163412 16163467 -166251775 - MIR SINE MIR -45 217 162 462 135 62 31 chr6 16163572 16163668 -166251574 + FLAM_C SINE Alu 30 128 -15 919 253 88 34 chr6 16163848 16164236 -166251006 + MLT1I LTR MaLR 1 409 0 1768 137 39 3 chr6 16164263 16164547 -166250695 - AluSx SINE Alu -18 294 1 286 267 19 38 chr6 16164903 16165008 -166250234 + MLT1K LTR MaLR 463 565 -23 1950 133 0 0 chr6 16165013 16165307 -166249935 - AluJb SINE Alu -5 307 14 2008 100 0 0 chr6 16165336 16165615 -166249627 + AluSx SINE Alu 34 312 0 1242 100 0 0 chr6 16165615 16165769 -166249473 + AluSg/x SINE Alu 129 305 -2 23 0 0 0 chr6 16165769 16165792 -166249450 + AT_rich Low_complexity Low_complexity 1 23 0 369 292 10 0 chr6 16165958 16166054 -166249188 - MIR3 SINE MIR -16 192 96 2399 72 3 0 chr6 16166778 16167083 -166248159 + AluSp SINE Alu 5 310 -3 2006 113 31 3 chr6 16167297 16167590 -166247652 + AluSx SINE Alu 1 301 -11 1863 157 0 3 chr6 16167855 16168161 -166247081 - AluJo SINE Alu -7 305 1 193 213 43 149 chr6 16168311 16168405 -166246837 + MIR SINE MIR 124 207 -55 198 0 0 0 chr6 16168576 16168598 -166246644 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 245 255 0 0 chr6 16168598 16168649 -166246593 - FLAM SINE Alu -17 116 66 2454 53 0 0 chr6 16168649 16168948 -166246294 + AluY SINE Alu 1 299 -12 1327 183 0 27 chr6 16168959 16169216 -166246026 - AluJo SINE Alu -62 250 1 2254 96 3 6 chr6 16169694 16170008 -166245234 - AluSp SINE Alu 0 313 1 2048 133 0 0 chr6 16170014 16170323 -166244919 - AluSx SINE Alu -3 309 1 1465 112 70 0 chr6 16170436 16170650 -166244592 + MER30 DNA MER1_type 1 229 -1 764 204 46 20 chr6 16170693 16170845 -166244397 + FRAM SINE Alu 1 156 -10 1591 101 86 34 chr6 16170877 16171324 -166243918 + AluSx SINE Alu 1 461 0 546 216 19 91 chr6 16171406 16171614 -166243628 + L1MD1 LINE L1 6035 6227 -15 1427 171 80 0 chr6 16171619 16171893 -166243349 + AluJb SINE Alu 1 296 -16 212 128 0 85 chr6 16172016 16172063 -166243179 + L2 LINE L2 3271 3313 0 2167 121 0 0 chr6 16172106 16172412 -166242830 + AluSc SINE Alu 1 306 -3 2071 131 0 0 chr6 16172417 16172722 -166242520 + AluSq SINE Alu 1 305 -8 746 223 146 5 chr6 16172724 16172944 -166242298 + MIR SINE MIR 12 262 0 1687 266 93 26 chr6 16173084 16173555 -166241687 - MLT1G1 LTR MaLR 0 595 84 1925 142 0 7 chr6 16173555 16173858 -166241384 - AluSx SINE Alu -11 301 1 1687 266 93 26 chr6 16173858 16173913 -166241329 - MLT1G1 LTR MaLR -511 84 34 796 139 9 0 chr6 16173913 16174028 -166241214 + MER74A LTR ERVL 1 116 -442 446 315 61 6 chr6 16174381 16174546 -166240696 - MIR3 SINE MIR -16 192 19 1915 138 40 0 chr6 16174754 16175052 -166240190 - AluSx SINE Alu 0 312 3 2148 109 6 6 chr6 16175066 16175378 -166239864 - AluSq SINE Alu -1 312 1 244 150 25 25 chr6 16175754 16175834 -166239408 + GA-rich Low_complexity Low_complexity 2 81 0 1182 128 0 0 chr6 16177544 16177723 -166237519 - AluSq SINE Alu 0 313 135 1747 166 0 10 chr6 16177763 16178070 -166237172 + AluJo SINE Alu 1 304 -8 322 299 111 14 chr6 16178075 16178219 -166237023 - MIR SINE MIR -14 248 91 2058 109 0 54 chr6 16178246 16178559 -166236683 - AluSx SINE Alu -16 296 1 2285 79 3 0 chr6 16178602 16178892 -166236350 - AluSp SINE Alu -18 295 5 230 261 114 23 chr6 16179265 16179353 -166235889 + LTR48B LTR ERV1 1 96 -548 * 1028 220 40 40 chr6 16179345 16179645 -166235597 + MER39 LTR ERV1 312 611 -96 1277 199 17 51 chr6 16179647 16179784 -166235458 + AluJo SINE Alu 1 141 -171 198 0 0 0 chr6 16179784 16179806 -166235436 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1277 199 17 51 chr6 16179806 16179960 -166235282 + AluJo SINE Alu 141 282 -30 2208 90 0 3 chr6 16179962 16180251 -166234991 - AluSx SINE Alu -13 299 12 28 0 0 0 chr6 16180269 16180297 -166234945 + AT_rich Low_complexity Low_complexity 1 28 0 2215 80 0 7 chr6 16180297 16180597 -166234645 + AluY SINE Alu 2 299 -12 2338 92 0 6 chr6 16180909 16181224 -166234018 + AluSq SINE Alu 1 313 0 312 206 205 12 chr6 16181227 16181342 -166233900 + MIR SINE MIR 46 181 -65 231 352 167 19 chr6 16181678 16181840 -166233402 - MIR SINE MIR -56 206 21 2227 60 0 7 chr6 16181914 16182227 -166233015 - AluY SINE Alu 0 311 1 2135 112 0 3 chr6 16182933 16183237 -166232005 + AluSx SINE Alu 1 303 -9 2061 78 60 0 chr6 16183244 16183525 -166231717 + AluSg SINE Alu 1 298 -12 497 228 0 88 chr6 16184103 16184158 -166231084 + MIR SINE MIR 96 154 -108 2162 113 0 0 chr6 16184158 16184460 -166230782 + AluSx SINE Alu 1 302 -10 497 228 0 88 chr6 16184460 16184540 -166230702 + MIR SINE MIR 154 219 -43 1801 113 22 7 chr6 16184671 16184946 -166230296 + AluSx SINE Alu 11 289 -23 27 62 0 0 chr6 16184946 16184994 -166230248 + AT_rich Low_complexity Low_complexity 1 48 0 1748 164 10 0 chr6 16185208 16185500 -166229742 + AluJo SINE Alu 1 295 -17 2211 68 0 42 chr6 16185677 16185984 -166229258 - AluY SINE Alu -17 294 1 257 236 0 90 chr6 16186098 16186145 -166229097 + L1ME4a LINE L1 5583 5620 -501 2267 89 0 7 chr6 16186145 16186449 -166228793 - AluSg SINE Alu -8 302 1 257 236 0 90 chr6 16186449 16186490 -166228752 + L1ME4a LINE L1 5620 5663 -458 277 236 97 42 chr6 16186569 16186713 -166228529 + L1ME4a LINE L1 5778 5929 -192 25 31 0 0 chr6 16186713 16186745 -166228497 + AT_rich Low_complexity Low_complexity 1 32 0 985 70 8 0 chr6 16186752 16186880 -166228362 - AluY SINE Alu -181 130 2 337 228 149 53 chr6 16186906 16186991 -166228251 + L1ME4a LINE L1 5959 6059 -62 2266 99 3 0 chr6 16186991 16187293 -166227949 - AluSx SINE Alu -9 303 1 337 228 149 53 chr6 16187293 16187321 -166227921 + L1ME4a LINE L1 6059 6083 -38 1908 214 85 26 chr6 16187323 16187963 -166227279 - L1ME2 LINE L1 -8 6162 5452 1197 162 0 50 chr6 16187977 16188199 -166227043 - AluJb SINE Alu -15 297 87 1800 98 44 63 chr6 16188238 16188553 -166226689 - AluSx SINE Alu -3 309 1 712 123 0 15 chr6 16188555 16188685 -166226557 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 2052 134 0 0 chr6 16188690 16188996 -166226246 + AluSx SINE Alu 3 308 -4 1243 168 34 71 chr6 16189035 16189188 -166226054 - AluJo SINE Alu -18 294 156 2110 111 0 3 chr6 16189188 16189476 -166225766 - AluSg SINE Alu -19 291 5 1243 168 34 71 chr6 16189476 16189619 -166225623 - AluJo SINE Alu -156 156 9 1721 146 56 0 chr6 16189717 16189890 -166225352 - AluSg SINE Alu -7 303 106 234 0 0 0 chr6 16189890 16189916 -166225326 + (TA)n Simple_repeat Simple_repeat 2 27 0 1721 146 56 0 chr6 16189916 16190029 -166225213 - AluSg SINE Alu -204 106 1 267 235 0 0 chr6 16190859 16190927 -166224315 - L1ME2 LINE L1 -767 5395 5328 2076 181 57 75 chr6 16191291 16191855 -166223387 - MLT2B3 LTR ERVL 0 554 1 2019 113 0 45 chr6 16191938 16192248 -166222994 - AluSg SINE Alu -14 296 1 630 323 16 16 chr6 16192310 16192502 -166222740 - L2 LINE L2 0 3272 3081 27 49 0 0 chr6 16192566 16192607 -166222635 + AT_rich Low_complexity Low_complexity 1 41 0 2085 125 3 0 chr6 16192726 16193022 -166222220 - AluSx SINE Alu -15 297 1 540 100 0 0 chr6 16195023 16195103 -166220139 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 238 200 150 0 chr6 16196380 16196460 -166218782 - L1MC4 LINE L1 -1337 6705 6614 333 258 21 43 chr6 16196500 16196593 -166218649 + L1MC4 LINE L1 6614 6704 -1338 187 155 0 69 chr6 16196594 16196652 -166218590 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 235 150 0 0 chr6 16196654 16196694 -166218548 - L1MC4 LINE L1 -1341 6701 6662 1917 120 0 11 chr6 16196821 16197130 -166218112 - AluY SINE Alu 0 306 1 2065 122 3 0 chr6 16197130 16197425 -166217817 - AluSq SINE Alu -16 297 2 385 230 14 74 chr6 16197826 16197974 -166217268 + Charlie7 DNA MER1_type 1 139 -2473 1384 200 48 3 chr6 16198142 16198437 -166216805 + AluJb SINE Alu 5 312 0 213 65 0 0 chr6 16198437 16198468 -166216774 + (GA)n Simple_repeat Simple_repeat 1 31 0 567 0 0 0 chr6 16198468 16198531 -166216711 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 776 173 8 8 chr6 16198550 16198683 -166216559 + FLAM_C SINE Alu 1 133 0 1472 101 0 18 chr6 16198900 16199118 -166216124 - AluSx SINE Alu -96 216 3 669 143 9 194 chr6 16199154 16199206 -166216036 - MER33 DNA MER1_type -2298 326 266 1953 118 0 67 chr6 16199206 16199520 -166215722 + AluSx SINE Alu 3 295 -17 669 143 9 194 chr6 16199520 16199638 -166215604 - MER33 DNA MER1_type -2358 266 128 1576 139 95 7 chr6 16199638 16199911 -166215331 + 7SLRNA srpRNA srpRNA 15 311 -9 669 143 9 194 chr6 16199911 16199931 -166215311 - MER33 DNA MER1_type -2496 128 106 1810 156 0 0 chr6 16199931 16200213 -166215029 + AluJo SINE Alu 1 282 -30 324 0 0 0 chr6 16200213 16200249 -166214993 + (TA)n Simple_repeat Simple_repeat 2 37 0 669 143 9 194 chr6 16200249 16200405 -166214837 - MER33 DNA MER1_type -2516 108 3 1721 156 7 20 chr6 16200642 16200944 -166214298 + AluJb SINE Alu 1 298 -14 498 197 27 122 chr6 16200974 16201092 -166214150 - MIR SINE MIR -87 175 79 1875 117 7 4 chr6 16201092 16201402 -166213840 + AluSx SINE Alu 8 318 0 498 197 27 122 chr6 16201402 16201470 -166213772 - MIR SINE MIR -183 79 6 2585 154 66 59 chr6 16201562 16201625 -166213617 + LTR26B LTR ERV1 1 62 -469 2073 114 0 3 chr6 16201625 16201922 -166213320 + AluSx SINE Alu 1 296 -16 2585 154 66 59 chr6 16201922 16202385 -166212857 + LTR26B LTR ERV1 62 531 0 2154 106 0 0 chr6 16202943 16203235 -166212007 - AluSq SINE Alu -21 292 1 22 0 0 0 chr6 16203393 16203415 -166211827 + AT_rich Low_complexity Low_complexity 1 22 0 1346 162 13 87 chr6 16204172 16204313 -166210929 + AluJo SINE Alu 1 109 -203 1603 195 0 0 chr6 16204313 16204617 -166210625 + AluJb SINE Alu 1 304 0 1346 162 13 87 chr6 16204617 16204783 -166210459 + AluJo SINE Alu 109 286 -26 25 0 0 0 chr6 16205509 16205534 -166209708 + AT_rich Low_complexity Low_complexity 1 25 0 1399 12 6 6 chr6 16205536 16205701 -166209541 - L1PA3 LINE L1 0 6155 5991 804 128 21 57 chr6 16205723 16205864 -166209378 - FLAM_C SINE Alu -6 137 2 2165 100 0 0 chr6 16206216 16206506 -166208736 - AluSq SINE Alu -23 290 1 23 78 0 0 chr6 16206729 16206780 -166208462 + AT_rich Low_complexity Low_complexity 1 51 0 187 295 175 12 chr6 16206881 16207034 -166208208 + MIR SINE MIR 20 208 -54 624 198 48 0 chr6 16207071 16207197 -166208045 + AluJo SINE Alu 39 170 -142 2289 88 3 3 chr6 16207251 16207559 -166207683 + AluSp SINE Alu 3 310 -3 724 164 0 36 chr6 16208278 16208418 -166206824 - FRAM SINE Alu 0 40 1 829 215 0 36 chr6 16208593 16208788 -166206454 - AluSg/x SINE Alu -7 303 116 786 304 11 8 chr6 16208793 16209056 -166206186 - L1ME4a LINE L1 -247 5874 5611 2256 100 49 31 chr6 16209077 16209226 -166206016 + THE1A LTR MaLR 1 146 -209 2026 118 3 0 chr6 16209226 16209530 -166205712 - AluSq SINE Alu -8 305 1 2256 100 49 31 chr6 16209530 16209729 -166205513 + THE1A LTR MaLR 146 355 0 432 103 0 0 chr6 16210025 16210093 -166205149 - L1PB3 LINE L1 0 6154 6087 2103 106 10 0 chr6 16210116 16210408 -166204834 - AluSq SINE Alu -18 295 1 966 108 36 209 chr6 16210624 16210703 -166204539 + MER30 DNA MER1_type 1 92 -138 1836 153 3 0 chr6 16210703 16210990 -166204252 + AluSx SINE Alu 1 288 -24 1931 115 11 0 chr6 16211000 16211287 -166203955 + AluSq SINE Alu 1 290 -23 966 108 36 209 chr6 16211287 16211474 -166203768 + MER30 DNA MER1_type 102 230 0 1393 165 76 3 chr6 16211513 16211804 -166203438 + AluJo SINE Alu 1 312 0 494 69 0 14 chr6 16211804 16211876 -166203366 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 1127 71 0 33 chr6 16211876 16212060 -166203182 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2432 58 3 7 chr6 16212393 16212703 -166202539 - AluSc SINE Alu 0 309 1 1555 192 3 42 chr6 16212714 16213022 -166202220 - AluJo SINE Alu -2 300 5 1888 53 0 16 chr6 16213041 16213284 -166201958 + AluY SINE Alu 57 295 -16 1064 99 6 17 chr6 16213288 16213469 -166201773 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 240 111 0 0 chr6 16213469 16213505 -166201737 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 2179 99 7 3 chr6 16213505 16213809 -166201433 - AluSx SINE Alu -3 309 5 1864 140 7 3 chr6 16213839 16214131 -166201111 + AluSq SINE Alu 1 293 -20 1837 135 0 43 chr6 16214216 16214354 -166200888 + AluJb SINE Alu 1 143 -190 2252 92 3 3 chr6 16214354 16214660 -166200582 + AluSp SINE Alu 1 306 -7 1837 135 0 43 chr6 16214660 16214868 -166200374 + AluJb SINE Alu 143 333 0 3682 105 39 60 chr6 16215147 16215396 -166199846 + MER39B LTR ERV1 1 254 -399 2211 115 0 3 chr6 16215396 16215708 -166199534 + AluSq SINE Alu 1 311 -2 3682 105 39 60 chr6 16215708 16215955 -166199287 + MER39B LTR ERV1 254 482 -171 2212 102 0 3 chr6 16215955 16216258 -166198984 + AluSx SINE Alu 1 302 -10 3682 105 39 60 chr6 16216258 16216427 -166198815 + MER39B LTR ERV1 482 653 0 227 182 36 18 chr6 16216863 16216918 -166198324 + MIR SINE MIR 96 151 -111 2095 129 0 0 chr6 16217086 16217389 -166197853 + AluSx SINE Alu 1 303 -9 1222 196 0 0 chr6 16217401 16217651 -166197591 + L1MA4 LINE L1 6049 6298 -2 2258 97 0 0 chr6 16217659 16217957 -166197285 + AluSx SINE Alu 1 298 -14 832 118 0 59 chr6 16217958 16218094 -166197148 + FLAM_C SINE Alu 1 128 -5 306 143 0 0 chr6 16218285 16218348 -166196894 + (TC)n Simple_repeat Simple_repeat 2 64 0 282 29 0 0 chr6 16218348 16218383 -166196859 + (CA)n Simple_repeat Simple_repeat 1 35 0 259 395 35 23 chr6 16218897 16219069 -166196173 - MIR3 SINE MIR -15 193 20 196 274 129 0 chr6 16219100 16219162 -166196080 - L2 LINE L2 0 3313 3244 28 0 0 0 chr6 16220512 16220540 -166194702 + AT_rich Low_complexity Low_complexity 1 28 0 1517 126 72 47 chr6 16220596 16220874 -166194368 - AluJb SINE Alu -27 285 1 275 238 0 0 chr6 16221060 16221123 -166194119 + L1MA8 LINE L1 6181 6243 -48 269 309 12 12 chr6 16221491 16221575 -166193667 - MIR3 SINE MIR -30 178 95 202 288 54 72 chr6 16221546 16221657 -166193585 + MIR3 SINE MIR 85 193 -15 * 2220 88 7 0 chr6 16222473 16222770 -166192472 + AluSx SINE Alu 1 299 -13 1749 161 0 10 chr6 16223438 16223742 -166191500 - AluJb SINE Alu -11 301 1 2282 94 3 3 chr6 16224257 16224566 -166190676 + AluSc SINE Alu 1 309 0 229 253 274 11 chr6 16224872 16224967 -166190275 - MER5A DNA MER1_type 0 189 70 2231 90 0 16 chr6 16224988 16225300 -166189942 - AluSq SINE Alu -6 307 1 2249 81 0 3 chr6 16225865 16226162 -166189080 - AluSg SINE Alu -14 296 1 392 374 61 9 chr6 16226183 16226397 -166188845 - MIR SINE MIR -7 255 31 923 128 0 0 chr6 16226688 16226821 -166188421 - FLAM_C SINE Alu 0 133 1 2349 93 0 0 chr6 16226888 16227198 -166188044 + AluSx SINE Alu 1 310 -2 1285 208 39 108 chr6 16227259 16227667 -166187575 - MSTD LTR MaLR 0 396 17 1715 170 0 20 chr6 16227732 16228032 -166187210 + AluJb SINE Alu 1 294 -18 1959 155 0 0 chr6 16228300 16228610 -166186632 - AluSx SINE Alu -2 310 1 912 132 0 0 chr6 16228610 16228746 -166186496 - AluSq/x SINE Alu -176 136 1 254 301 165 8 chr6 16228747 16228880 -166186362 + MIR SINE MIR 96 249 -13 1504 180 14 4 chr6 16228933 16229231 -166186011 - AluJb SINE Alu 0 301 1 30 0 0 0 chr6 16229393 16229423 -166185819 + AT_rich Low_complexity Low_complexity 1 30 0 496 208 21 10 chr6 16230239 16230335 -166184907 + MER5A DNA MER1_type 16 112 -77 326 275 191 15 chr6 16230268 16230399 -166184843 - MER5A DNA MER1_type -32 157 4 * 328 164 0 0 chr6 16230659 16230714 -166184528 + AluJ SINE Alu 87 141 -161 2062 114 7 3 chr6 16230718 16231203 -166184039 + AluSc SINE Alu 1 309 0 1043 117 11 6 chr6 16230995 16231254 -166183988 + (GAAA)n Simple_repeat Simple_repeat 1 260 0 856 179 13 0 chr6 16231254 16231410 -166183832 + AluJ SINE Alu 129 286 -26 538 178 59 20 chr6 16231416 16231517 -166183725 - AluJb SINE Alu -25 287 183 1612 152 21 28 chr6 16231517 16231807 -166183435 + AluJb SINE Alu 14 301 -11 23 0 0 0 chr6 16231813 16231836 -166183406 + AT_rich Low_complexity Low_complexity 1 23 0 193 298 0 0 chr6 16231884 16231931 -166183311 + L2 LINE L2 3262 3308 -5 826 57 0 0 chr6 16232082 16232187 -166183055 + AluY SINE Alu 1 105 -206 2114 108 7 0 chr6 16232796 16233093 -166182149 + AluSp SINE Alu 1 299 -14 1196 114 0 0 chr6 16233093 16233260 -166181982 + AluSq SINE Alu 135 301 -12 2189 101 0 0 chr6 16233459 16233757 -166181485 - AluSq SINE Alu -15 298 1 454 98 0 98 chr6 16233760 16233842 -166181400 - U3 snRNA snRNA -143 74 1 1854 142 30 0 chr6 16233860 16234039 -166181203 - AluJo SINE Alu -1 311 139 2114 109 6 10 chr6 16234039 16234352 -166180890 - AluSx SINE Alu 0 312 1 203 79 26 0 chr6 16234356 16234394 -166180848 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 1854 142 30 0 chr6 16234394 16234511 -166180731 - AluJo SINE Alu -175 137 1 1575 125 0 0 chr6 16235899 16236123 -166179119 - AluSx SINE Alu -88 224 1 2162 92 0 3 chr6 16236330 16236656 -166178586 - AluSg SINE Alu 0 325 1 305 0 50 0 chr6 16236658 16236698 -166178544 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 1402 196 11 25 chr6 16236698 16236984 -166178258 - AluJo SINE Alu -30 282 1 200 200 50 0 chr6 16237231 16237271 -166177971 + MIR SINE MIR 81 122 -140 891 118 0 37 chr6 16237307 16237443 -166177799 + FLAM_C SINE Alu 1 131 -2 1915 96 4 0 chr6 16237476 16237736 -166177506 - AluSc SINE Alu -12 297 37 565 85 0 64 chr6 16237736 16237830 -166177412 + FLAM_C SINE Alu 52 139 -4 195 293 80 13 chr6 16238109 16238184 -166177058 + MIR SINE MIR 109 188 -74 2039 115 3 7 chr6 16238338 16238634 -166176608 + AluSq SINE Alu 1 295 -18 2201 98 3 0 chr6 16238638 16238934 -166176308 + AluSp SINE Alu 1 297 -16 237 254 17 0 chr6 16238988 16239047 -166176195 + L1MC/D LINE L1 5574 5633 -2175 2300 94 0 0 chr6 16239076 16239375 -166175867 - AluSg SINE Alu -9 301 3 1410 109 5 0 chr6 16239930 16240132 -166175110 + AluSp SINE Alu 2 204 -109 2017 108 3 16 chr6 16240488 16240795 -166174447 + AluSx SINE Alu 5 307 -5 401 0 20 0 chr6 16240943 16240992 -166174250 + (TG)n Simple_repeat Simple_repeat 2 51 0 786 169 0 0 chr6 16241001 16241131 -166174111 - FLAM_C SINE Alu -2 131 2 2108 114 0 3 chr6 16241268 16241565 -166173677 + AluSc SINE Alu 1 296 -13 1976 191 22 37 chr6 16241696 16241848 -166173394 + MSTD LTR MaLR 1 154 -242 1731 159 11 0 chr6 16241848 16242131 -166173111 - AluJb SINE Alu -20 292 7 1976 191 22 37 chr6 16242131 16242307 -166172935 + MSTD LTR MaLR 154 325 -71 1869 118 37 0 chr6 16242307 16242608 -166172634 - AluSx SINE Alu 0 311 1 1976 191 22 37 chr6 16242608 16242679 -166172563 + MSTD LTR MaLR 325 396 0 795 186 0 0 chr6 16242774 16242898 -166172344 + FRAM SINE Alu 23 146 -30 2045 107 4 0 chr6 16242900 16243227 -166172015 - AluSq SINE Alu 0 328 1 1338 159 63 22 chr6 16244123 16244394 -166170848 - AluJb SINE Alu -30 282 1 653 162 0 8 chr6 16244452 16244569 -166170673 + FLAM_C SINE Alu 24 139 -4 1791 127 33 4 chr6 16244820 16245096 -166170146 - AluSx SINE Alu -28 284 1 1682 167 3 28 chr6 16245189 16245507 -166169735 + AluJb SINE Alu 2 311 -1 242 265 29 0 chr6 16245558 16245626 -166169616 - LTR16A LTR ERVL 0 450 381 1844 130 40 7 chr6 16245639 16245939 -166169303 + AluSq SINE Alu 1 310 -3 569 155 0 10 chr6 16245957 16246054 -166169188 + AluJb SINE Alu 206 301 -11 913 164 0 0 chr6 16246055 16246201 -166169041 - AluJo SINE Alu -30 282 137 182 207 0 0 chr6 16246201 16246230 -166169012 + L2 LINE L2 3249 3277 -36 742 273 90 60 chr6 16246334 16246634 -166168608 - MLT1G1 LTR MaLR -250 345 37 1988 101 6 52 chr6 16246705 16247032 -166168210 - AluSx SINE Alu 0 312 1 834 134 0 15 chr6 16247032 16247166 -166168076 - AluJo SINE Alu -178 134 3 2004 107 11 0 chr6 16248652 16248702 -166166540 + AluSg SINE Alu 1 49 -260 198 0 0 0 chr6 16248702 16248724 -166166518 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2004 107 11 0 chr6 16248724 16248979 -166166263 + AluSg SINE Alu 49 309 0 2072 115 0 0 chr6 16249166 16249461 -166165781 - AluSx SINE Alu -17 295 1 2065 102 3 0 chr6 16249678 16249971 -166165271 + AluSq SINE Alu 1 294 -19 230 145 145 48 chr6 16250040 16250102 -166165140 - MIR SINE MIR -109 153 86 732 165 0 30 chr6 16250259 16250392 -166164850 - FLAM_C SINE Alu -10 133 5 2479 62 0 0 chr6 16250420 16250725 -166164517 + AluY SINE Alu 2 306 -5 1767 155 0 23 chr6 16250931 16251241 -166164001 - AluJb SINE Alu -9 303 1 2243 77 3 3 chr6 16251326 16251675 -166163567 + AluSp SINE Alu 1 349 0 1712 159 14 0 chr6 16251812 16252095 -166163147 - AluSx SINE Alu -20 292 6 2133 100 0 32 chr6 16252156 16252466 -166162776 - AluSx SINE Alu 0 312 13 23 0 0 0 chr6 16252466 16252489 -166162753 + AT_rich Low_complexity Low_complexity 1 23 0 2034 125 3 28 chr6 16253302 16253621 -166161621 - AluSx SINE Alu -1 311 1 1078 194 0 37 chr6 16253737 16253953 -166161289 + AluJb SINE Alu 87 294 -18 2050 116 7 10 chr6 16254203 16254513 -166160729 - AluSx SINE Alu -3 309 1 2110 103 0 30 chr6 16255180 16255481 -166159761 + AluSg SINE Alu 1 292 -18 2048 119 0 0 chr6 16255537 16255823 -166159419 + AluSq SINE Alu 1 286 -27 195 42 0 0 chr6 16255826 16255850 -166159392 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 240 338 52 13 chr6 16255913 16255990 -166159252 - L2 LINE L2 0 3272 3193 893 113 0 23 chr6 16255991 16256124 -166159118 + FLAM_C SINE Alu 1 130 -3 375 307 35 0 chr6 16256176 16256290 -166158952 + MIR SINE MIR 47 164 -98 289 281 56 0 chr6 16256367 16256456 -166158786 - MIR SINE MIR -11 251 158 466 319 7 7 chr6 16256730 16256868 -166158374 - MIR SINE MIR -97 165 28 183 267 23 47 chr6 16257487 16257573 -166157669 + L3 LINE CR1 1346 1429 -148 518 231 28 66 chr6 16258679 16258965 -166156277 - L1MC5 LINE L1 -36 7925 7651 1585 160 4 4 chr6 16258980 16259248 -166155994 + AluJb SINE Alu 1 268 -44 2014 118 3 16 chr6 16259277 16259590 -166155652 + AluSg SINE Alu 1 309 -1 2235 89 0 3 chr6 16259593 16259924 -166155318 + AluY SINE Alu 1 311 0 1187 120 0 0 chr6 16259924 16260091 -166155151 + AluSg/x SINE Alu 134 300 -12 1883 162 3 3 chr6 16260101 16260415 -166154827 + L1MB3 LINE L1 5828 6141 -42 2187 74 27 3 chr6 16260415 16260712 -166154530 + AluSp SINE Alu 1 304 -9 2338 84 0 0 chr6 16260724 16261022 -166154220 + AluSq SINE Alu 1 298 -15 1177 128 11 0 chr6 16261037 16261217 -166154025 + AluSg/x SINE Alu 125 306 -6 631 260 113 40 chr6 16261282 16261549 -166153693 - L1MC5 LINE L1 -302 7659 7360 1651 141 22 59 chr6 16261549 16261869 -166153373 - AluSx SINE Alu 0 312 5 631 260 113 40 chr6 16261869 16261947 -166153295 - L1MC5 LINE L1 -601 7360 7289 1118 148 0 95 chr6 16262130 16262373 -166152869 - AluJb SINE Alu -6 306 87 1978 114 0 23 chr6 16262477 16262784 -166152458 + AluSx SINE Alu 1 300 -12 473 196 50 33 chr6 16263294 16263444 -166151798 + L1MC5 LINE L1 7786 7995 0 388 312 72 8 chr6 16263498 16263623 -166151619 + MIR SINE MIR 16 148 -60 187 328 17 0 chr6 16263632 16263690 -166151552 - MIR SINE MIR -3 259 201 2047 92 0 18 chr6 16264158 16264441 -166150801 + AluY SINE Alu 2 279 -32 318 26 0 0 chr6 16264443 16264482 -166150760 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2100 113 0 0 chr6 16264494 16264787 -166150455 + AluSx SINE Alu 1 293 -19 1971 130 16 7 chr6 16264798 16265105 -166150137 + AluSx SINE Alu 1 310 -2 1610 137 10 48 chr6 16265121 16265368 -166149874 - L1MB3 LINE L1 -261 5922 5667 1920 113 13 19 chr6 16265368 16265679 -166149563 + AluSc SINE Alu 1 309 0 2060 102 48 0 chr6 16265686 16265980 -166149262 + AluSx SINE Alu 1 308 -4 1610 137 10 48 chr6 16265980 16266016 -166149226 - L1MB3 LINE L1 -522 5661 5642 1987 125 0 0 chr6 16266308 16266587 -166148655 + AluSx SINE Alu 18 296 -16 288 111 0 0 chr6 16266599 16266644 -166148598 + (CA)n Simple_repeat Simple_repeat 2 46 0 770 153 0 62 chr6 16266648 16266792 -166148450 - AluJo SINE Alu -176 136 2 1749 180 0 0 chr6 16266801 16267106 -166148136 - AluJo SINE Alu -7 305 1 2296 74 0 3 chr6 16267529 16267828 -166147414 + AluY SINE Alu 1 298 -13 2207 108 0 10 chr6 16267924 16268221 -166147021 - AluSx SINE Alu -16 296 3 216 67 0 0 chr6 16268287 16268317 -166146925 + (TG)n Simple_repeat Simple_repeat 2 31 0 2256 106 0 3 chr6 16268521 16268823 -166146419 + AluSx SINE Alu 1 301 -11 3479 86 2 20 chr6 16318992 16319050 -166096192 - MER41A LTR ERV1 -63 491 433 2457 82 0 3 chr6 16319050 16319355 -166095887 + AluSp SINE Alu 1 304 -9 3479 86 2 20 chr6 16319355 16319796 -166095446 - MER41A LTR ERV1 -121 433 1 1196 229 20 0 chr6 16319874 16320123 -166095119 - AluJb SINE Alu -1 311 58 239 237 118 26 chr6 16320141 16320217 -166095025 - MLT1L LTR MaLR -327 288 206 235 316 0 13 chr6 16320272 16320351 -166094891 - MLT1L LTR MaLR -536 79 2 279 186 80 53 chr6 16320351 16320464 -166094778 - L2 LINE L2 -1226 2088 1973 719 122 9 9 chr6 16320464 16320579 -166094663 + FLAM_C SINE Alu 25 139 -4 1804 156 0 17 chr6 16320602 16320891 -166094351 + AluSq SINE Alu 29 312 -1 437 247 22 116 chr6 16320892 16321106 -166094136 - L2 LINE L2 -1321 1993 1807 2425 73 20 0 chr6 16321106 16321406 -166093836 - AluY SINE Alu -5 306 1 437 247 22 116 chr6 16321406 16321458 -166093784 - L2 LINE L2 -1507 1807 1752 655 283 83 5 chr6 16321590 16321815 -166093427 + MIR SINE MIR 9 250 -12 2162 96 7 7 chr6 16322407 16322700 -166092542 + AluSq SINE Alu 1 293 -20 2330 101 0 0 chr6 16322780 16323078 -166092164 + AluSg SINE Alu 1 298 -12 640 267 24 6 chr6 16323167 16323332 -166091910 + MIR SINE MIR 21 188 -74 534 163 0 0 chr6 16323566 16323676 -166091566 - AluJb SINE Alu 0 312 203 382 56 42 56 chr6 16323752 16323800 -166091442 - MLT1B LTR MaLR -2 388 341 1341 231 0 32 chr6 16323800 16324108 -166091134 - AluJo SINE Alu -14 298 1 2319 73 3 17 chr6 16324114 16324426 -166090816 - AluSp SINE Alu 0 308 1 382 56 42 56 chr6 16324426 16324440 -166090802 - MLT1B LTR MaLR -54 336 319 183 206 37 19 chr6 16324515 16324622 -166090620 + GA-rich Low_complexity Low_complexity 2 110 0 4882 84 14 50 chr6 16324654 16324745 -166090497 - LTR8 LTR ERV1 0 691 598 2445 86 3 10 chr6 16324745 16325059 -166090183 + AluSp SINE Alu 2 313 0 4882 84 14 50 chr6 16325059 16325104 -166090138 - LTR8 LTR ERV1 -93 598 553 2135 95 0 7 chr6 16325104 16325425 -166089817 - AluY SINE Alu 0 319 1 4882 84 14 50 chr6 16325425 16325680 -166089562 - LTR8 LTR ERV1 -138 553 290 2308 71 10 7 chr6 16325680 16325976 -166089266 - AluY SINE Alu -14 297 1 4882 84 14 50 chr6 16325976 16326298 -166088944 - LTR8 LTR ERV1 -401 290 1 2084 152 0 0 chr6 16326387 16326689 -166088553 + AluSq SINE Alu 1 302 -11 186 302 0 38 chr6 16326689 16326742 -166088500 - MIR SINE MIR -190 72 22 263 282 43 133 chr6 16326843 16326968 -166088274 + MIR3 SINE MIR 16 120 -88 2111 131 0 16 chr6 16326968 16327281 -166087961 - AluSx SINE Alu -4 308 1 263 282 43 133 chr6 16327281 16327343 -166087899 + MIR3 SINE MIR 120 186 -22 1991 145 0 0 chr6 16327481 16327784 -166087458 - AluSx SINE Alu 0 304 2 873 69 9 0 chr6 16327896 16328012 -166087230 - AluY SINE Alu -8 303 187 1080 175 0 0 chr6 16328714 16328880 -166086362 + AluJo SINE Alu 1 166 -146 3400 120 15 9 chr6 16328880 16329208 -166086034 + MER41A LTR ERV1 1 336 -218 2358 72 0 14 chr6 16329208 16329526 -166085716 + AluY SINE Alu 1 314 0 3400 120 15 9 chr6 16329526 16329721 -166085521 + MER41A LTR ERV1 336 528 -26 937 152 0 0 chr6 16329728 16329879 -166085363 + FRAM SINE Alu 1 40 0 198 103 0 0 chr6 16330787 16330816 -166084426 + (TA)n Simple_repeat Simple_repeat 2 30 0 2078 87 4 4 chr6 16330816 16331080 -166084162 - AluSp SINE Alu -49 264 1 2232 113 13 0 chr6 16331311 16331612 -166083630 - AluSx SINE Alu -4 308 4 549 269 223 20 chr6 16331693 16332083 -166083159 - L2 LINE L2 0 3313 2845 2079 106 29 26 chr6 16332083 16332256 -166082986 + MER41A LTR ERV1 1 172 -463 2327 92 20 0 chr6 16332256 16332560 -166082682 + AluSq SINE Alu 1 310 -3 2079 106 29 26 chr6 16332560 16332875 -166082367 + MER41A LTR ERV1 172 528 -107 683 262 102 67 chr6 16332894 16333013 -166082229 - L2 LINE L2 -593 2721 2608 2348 100 7 0 chr6 16333013 16333322 -166081920 + AluY SINE Alu 1 311 0 683 262 102 67 chr6 16333322 16333515 -166081727 - L2 LINE L2 -706 2608 2398 337 221 197 8 chr6 16333541 16333668 -166081574 + MIR SINE MIR 112 262 0 2002 69 127 22 chr6 16333709 16333984 -166081258 - AluSx SINE Alu -8 304 1 2137 124 0 10 chr6 16333998 16334296 -166080946 + AluSx SINE Alu 1 295 -17 578 222 0 8 chr6 16334502 16334619 -166080623 + MER63 DNA MER1_type 19 760 -76 292 263 26 0 chr6 16334617 16334693 -166080549 + MER63 DNA MER1_type 983 1060 0 * 2342 95 3 0 chr6 16334809 16335104 -166080138 + AluSq SINE Alu 1 296 -17 2482 74 0 0 chr6 16335110 16335449 -166079793 - AluY SINE Alu 0 339 1 325 289 0 89 chr6 16335453 16335588 -166079654 - L2 LINE L2 0 3272 3150 212 194 0 0 chr6 16335823 16335859 -166079383 + L2 LINE L2 3271 3306 -7 778 245 89 64 chr6 16335966 16336233 -166079009 + L1MC5 LINE L1 7391 7650 -311 2140 129 3 3 chr6 16336233 16336544 -166078698 - AluSq SINE Alu -2 311 1 778 245 89 64 chr6 16336544 16336790 -166078452 + L1MC5 LINE L1 7650 7917 -44 1473 185 50 4 chr6 16336793 16337074 -166078168 + AluJb SINE Alu 3 296 -16 2342 81 3 7 chr6 16337119 16337417 -166077825 - AluSp SINE Alu -16 297 1 1372 208 26 30 chr6 16337456 16337588 -166077654 + AluJb SINE Alu 1 132 -180 2042 103 65 7 chr6 16337588 16337880 -166077362 + AluSg SINE Alu 2 310 0 1372 208 26 30 chr6 16337880 16338050 -166077192 + AluJb SINE Alu 132 302 -10 2093 110 0 54 chr6 16338050 16338367 -166076875 + AluSx SINE Alu 1 300 -12 2119 112 3 17 chr6 16338385 16338681 -166076561 + AluSx SINE Alu 6 297 -15 2421 83 3 0 chr6 16338863 16339164 -166076078 - AluY SINE Alu -9 302 1 25 51 0 0 chr6 16339650 16339689 -166075553 + AT_rich Low_complexity Low_complexity 1 39 0 2064 107 7 20 chr6 16339718 16340017 -166075225 - AluSx SINE Alu -17 295 1 2196 103 13 0 chr6 16340224 16340525 -166074717 + AluSp SINE Alu 1 305 -8 2150 128 3 7 chr6 16340757 16341062 -166074180 + AluSq SINE Alu 1 304 -9 2069 129 26 22 chr6 16341077 16341205 -166074037 + AluSx SINE Alu 1 127 -185 2389 82 3 0 chr6 16341205 16341508 -166073734 + AluY SINE Alu 1 304 -7 2069 129 26 22 chr6 16341508 16341690 -166073552 + AluSx SINE Alu 127 312 0 246 136 0 167 chr6 16341699 16341765 -166073477 - MLT1G1 LTR MaLR 0 595 541 1090 156 31 0 chr6 16341974 16342134 -166073108 - AluJo SINE Alu -13 299 135 2446 87 0 13 chr6 16342188 16342499 -166072743 - AluSx SINE Alu -4 308 2 309 218 85 20 chr6 16342499 16342616 -166072626 - MLT1E LTR MaLR -379 176 55 187 315 65 82 chr6 16342770 16342923 -166072319 - L2 LINE L2 -639 2675 2525 2377 71 0 0 chr6 16342923 16343252 -166071990 + AluY SINE Alu 2 330 0 187 315 65 82 chr6 16343252 16343329 -166071913 - L2 LINE L2 -789 2525 2448 824 171 0 0 chr6 16343349 16343466 -166071776 - AluJo SINE Alu -185 127 11 2691 35 0 10 chr6 16344267 16344581 -166070661 + AluY SINE Alu 1 311 0 2256 87 17 0 chr6 16344716 16345004 -166070238 - AluSp SINE Alu -20 293 1 448 97 0 0 chr6 16345236 16345308 -166069934 - AluSp/q SINE Alu -2 311 240 742 161 12 54 chr6 16345443 16345611 -166069631 - BC200 scRNA scRNA -38 162 2 1193 88 23 23 chr6 16346027 16346198 -166069044 - AluY SINE Alu -7 304 134 728 143 36 0 chr6 16346376 16346488 -166068754 + AluJb SINE Alu 2 117 -195 188 228 11 109 chr6 16346620 16346712 -166068530 - L2 LINE L2 -70 3243 3161 2290 103 13 0 chr6 16346747 16347047 -166068195 + AluSc SINE Alu 1 304 -5 2134 128 13 0 chr6 16347128 16347426 -166067816 + AluSx SINE Alu 1 302 -10 543 241 69 52 chr6 16347525 16347699 -166067543 - MER5A DNA MER1_type -6 183 7 2202 128 3 3 chr6 16347797 16348109 -166067133 - AluSx SINE Alu 0 312 1 358 164 60 0 chr6 16348253 16348320 -166066922 + AluJ/FLAM SINE Alu 1 71 -231 2340 97 10 0 chr6 16348320 16348618 -166066624 - AluSx SINE Alu -11 301 1 2031 124 28 0 chr6 16348618 16348908 -166066334 - AluSx SINE Alu -14 298 1 233 191 0 0 chr6 16349765 16349807 -166065435 + Alu SINE Alu 1 42 -91 258 311 142 0 chr6 16349928 16350005 -166065237 - L2 LINE L2 0 3313 3216 2029 139 23 0 chr6 16350005 16350308 -166064934 + AluSx SINE Alu 1 310 -2 258 311 142 0 chr6 16350308 16350336 -166064906 - L2 LINE L2 -97 3216 3193 381 265 41 0 chr6 16350353 16350451 -166064791 + MER81 DNA DNA 1 102 -12 1097 162 0 17 chr6 16350479 16350652 -166064590 + AluJo SINE Alu 1 170 -142 1151 112 0 0 chr6 16350654 16350833 -166064409 - AluSq SINE Alu 0 310 132 1906 127 4 0 chr6 16350833 16351129 -166064113 + AluSx SINE Alu 26 322 0 2477 71 0 0 chr6 16351131 16351427 -166063815 + AluY SINE Alu 1 296 -15 1028 165 12 0 chr6 16351427 16351591 -166063651 + AluJb SINE Alu 134 299 -13 498 236 132 0 chr6 16351592 16351698 -166063544 - FLAM_A SINE Alu -13 120 1 28 29 0 0 chr6 16351812 16351847 -166063395 + AT_rich Low_complexity Low_complexity 1 35 0 2092 148 3 0 chr6 16351853 16352163 -166063079 - AluSx SINE Alu -1 311 1 2421 72 0 37 chr6 16352221 16352542 -166062700 + AluY SINE Alu 1 309 -2 1817 158 15 0 chr6 16352547 16352819 -166062423 - AluJo SINE Alu -36 276 1 1801 171 8 40 chr6 16352824 16353002 -166062240 - MLT1B LTR MaLR -44 346 164 2305 92 0 20 chr6 16353002 16353308 -166061934 - AluSg SINE Alu -10 300 1 1604 158 10 65 chr6 16353308 16353476 -166061766 - AluJo SINE Alu -15 297 152 1975 126 28 0 chr6 16353476 16353762 -166061480 - AluSp SINE Alu -19 294 1 1604 158 10 65 chr6 16353762 16353903 -166061339 - AluJo SINE Alu -160 152 5 1801 171 8 40 chr6 16353903 16354075 -166061167 - MLT1B LTR MaLR -224 166 6 746 191 8 0 chr6 16354165 16354291 -166060951 + AluJo/FLAM SINE Alu 1 127 -185 2140 125 0 0 chr6 16354292 16354587 -166060655 - AluY SINE Alu -16 295 1 489 233 112 0 chr6 16354593 16354709 -166060533 - FLAM_A SINE Alu -4 129 1 1457 177 0 110 chr6 16354946 16355105 -166060137 - AluJb SINE Alu -20 292 117 2197 110 0 7 chr6 16355105 16355396 -166059846 - AluSg1 SINE Alu -18 291 3 1457 177 0 110 chr6 16355396 16355468 -166059774 - AluJb SINE Alu -195 117 105 2458 90 3 0 chr6 16355468 16355779 -166059463 - AluSp SINE Alu 0 313 2 1457 177 0 110 chr6 16355779 16355874 -166059368 - AluJb SINE Alu -207 105 1 217 242 113 16 chr6 16355875 16355937 -166059305 - L2 LINE L2 0 3272 3205 939 158 35 23 chr6 16356290 16356461 -166058781 - FRAM SINE Alu -10 166 1 1819 141 0 89 chr6 16356466 16356656 -166058586 - AluSq SINE Alu -15 298 147 2158 103 13 16 chr6 16356656 16356968 -166058274 - AluY SINE Alu 0 311 1 1819 141 0 89 chr6 16356968 16357104 -166058138 - AluSq SINE Alu -166 147 1 2837 157 49 33 chr6 16357127 16357644 -166057598 - MER21A LTR ERV1 0 931 403 1638 169 3 50 chr6 16357644 16357824 -166057418 - AluJo SINE Alu -5 307 147 1981 137 3 20 chr6 16357824 16358124 -166057118 - AluSx SINE Alu -15 297 3 1638 169 3 50 chr6 16358124 16358263 -166056979 - AluJo SINE Alu -165 147 3 2837 157 49 33 chr6 16358263 16358292 -166056950 - MER21A LTR ERV1 -528 403 376 944 206 0 0 chr6 16358373 16358543 -166056699 + FRAM SINE Alu 2 171 -5 639 122 7 109 chr6 16358545 16358589 -166056653 - MER21A LTR ERV1 -748 183 136 2239 84 7 32 chr6 16358589 16358898 -166056344 + AluSp SINE Alu 1 301 -12 639 122 7 109 chr6 16358898 16359000 -166056242 - MER21A LTR ERV1 -795 136 52 1343 153 0 31 chr6 16359001 16359229 -166056013 + AluJb SINE Alu 1 221 -91 356 269 32 0 chr6 16359267 16359360 -166055882 - MIR3 SINE MIR -2 206 111 2367 98 3 3 chr6 16359574 16359880 -166055362 - AluSp SINE Alu -7 306 1 2316 103 0 0 chr6 16359887 16360178 -166055064 - AluSg SINE Alu -19 291 1 21 0 0 0 chr6 16360178 16360199 -166055043 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 16360721 16360744 -166054498 + (TA)n Simple_repeat Simple_repeat 2 24 0 195 42 0 0 chr6 16360744 16360768 -166054474 + (T)n Simple_repeat Simple_repeat 1 24 0 2092 118 14 0 chr6 16360846 16361142 -166054100 - AluSx SINE Alu -12 300 1 314 281 152 18 chr6 16361220 16361391 -166053851 + MLT1K LTR MaLR 395 588 0 2231 96 7 13 chr6 16362298 16362601 -166052641 - AluSg SINE Alu -9 301 1 2431 87 3 0 chr6 16362607 16362907 -166052335 - AluSp SINE Alu -12 301 1 480 286 44 28 chr6 16363154 16363336 -166051906 + MIR SINE MIR 34 218 -44 882 150 7 29 chr6 16363580 16363720 -166051522 - AluJo SINE Alu -175 137 1 247 318 12 12 chr6 16363721 16363806 -166051436 - MIR SINE MIR -57 151 67 1839 143 13 54 chr6 16363933 16364247 -166050995 - AluJb SINE Alu -11 301 1 180 0 0 0 chr6 16364841 16364861 -166050381 + (T)n Simple_repeat Simple_repeat 1 20 0 268 308 108 17 chr6 16365797 16365917 -166049325 - MIR SINE MIR -112 150 20 212 239 0 33 chr6 16366959 16367051 -166048191 + G-rich Low_complexity Low_complexity 1 89 0 213 39 0 0 chr6 16367808 16367834 -166047408 + (CCG)n Simple_repeat Simple_repeat 3 28 0 209 208 28 69 chr6 16370008 16370152 -166045090 + (CGGG)n Simple_repeat Simple_repeat 3 140 0 218 164 0 16 chr6 16370167 16370228 -166045014 + G-rich Low_complexity Low_complexity 3 62 0 21 0 0 0 chr6 16370295 16370316 -166044926 + GC_rich Low_complexity Low_complexity 1 21 0 200 253 0 27 chr6 16370387 16370462 -166044780 + C-rich Low_complexity Low_complexity 2 74 0 200 241 36 12 chr6 16370596 16370679 -166044563 + G-rich Low_complexity Low_complexity 3 87 0 1858 128 30 16 chr6 16372777 16373082 -166042160 - AluSx SINE Alu -3 309 1 1741 79 0 4 chr6 16373467 16373694 -166041548 + AluSg SINE Alu 5 230 -80 721 132 8 25 chr6 16373699 16373820 -166041422 + AluSg/x SINE Alu 170 288 -21 1997 108 0 14 chr6 16374834 16375129 -166040113 - AluSg SINE Alu -19 291 1 1570 99 22 13 chr6 16376524 16376756 -166038486 + AluSq SINE Alu 1 234 -79 180 97 0 0 chr6 16376771 16376802 -166038440 + (A)n Simple_repeat Simple_repeat 1 31 0 482 82 14 0 chr6 16376902 16376975 -166038267 - AluSc SINE Alu -6 303 230 1498 82 0 0 chr6 16376975 16377169 -166038073 - AluSc SINE Alu -115 194 1 278 273 112 62 chr6 16377736 16377897 -166037345 + MIR SINE MIR 76 244 -18 223 287 47 62 chr6 16378767 16378896 -166036346 - MIR SINE MIR -66 142 16 418 298 180 39 chr6 16379117 16379500 -166035742 - L1ME4a LINE L1 -159 5962 5526 412 222 116 86 chr6 16380068 16380266 -166034976 + MIR SINE MIR 21 224 -38 2214 99 0 0 chr6 16380268 16380562 -166034680 + AluSg SINE Alu 1 294 -16 2062 98 0 25 chr6 16383069 16383386 -166031856 - AluSc SINE Alu 0 309 1 2109 98 10 3 chr6 16383551 16383846 -166031396 - AluSg SINE Alu -13 297 1 355 208 3 67 chr6 16383935 16384042 -166031200 - AluJb SINE Alu -161 141 56 1534 171 44 32 chr6 16384042 16384300 -166030942 - L1MB7 LINE L1 -197 5987 5723 2078 78 34 20 chr6 16384300 16384595 -166030647 - AluSg SINE Alu -11 299 1 1534 171 44 32 chr6 16384595 16384680 -166030562 - L1MB7 LINE L1 -461 5723 5640 444 19 0 0 chr6 16384832 16384885 -166030357 + (TG)n Simple_repeat Simple_repeat 1 53 0 2360 76 0 0 chr6 16385358 16385659 -166029583 - AluSx SINE Alu -11 301 1 904 175 0 6 chr6 16385664 16385830 -166029412 - AluJb SINE Alu -17 295 131 282 29 0 0 chr6 16386373 16386408 -166028834 + (TG)n Simple_repeat Simple_repeat 1 35 0 237 33 0 0 chr6 16386407 16386437 -166028805 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1214 128 29 166 chr6 16391129 16391473 -166023769 - AluJo SINE Alu -5 297 1 210 160 0 0 chr6 16391865 16391915 -166023327 + (TCCG)n Simple_repeat Simple_repeat 3 52 0 1981 111 4 0 chr6 16391918 16392198 -166023044 - AluSp SINE Alu -32 281 1 1747 152 30 3 chr6 16392433 16392735 -166022507 + AluSx SINE Alu 1 310 -2 212 224 282 12 chr6 16393029 16393114 -166022128 + MER5A DNA MER1_type 43 150 -39 * 318 226 16 0 chr6 16393055 16393117 -166022125 - MER5A DNA MER1_type -80 109 47 1414 157 3 124 chr6 16393294 16393484 -166021758 + AluJo SINE Alu 1 134 -168 1979 113 0 0 chr6 16393484 16393759 -166021483 + AluSx SINE Alu 1 275 -37 1414 157 3 124 chr6 16393759 16393906 -166021336 + AluJo SINE Alu 134 297 -5 253 296 141 56 chr6 16394231 16394373 -166020869 - MIR SINE MIR -1 261 108 343 74 0 56 chr6 16394520 16394574 -166020668 + MIR SINE MIR 110 160 -102 2082 105 3 0 chr6 16395186 16395494 -166019748 + AluSp SINE Alu 1 309 0 2119 100 0 3 chr6 16395697 16395996 -166019246 - AluSx SINE Alu -14 298 1 24 0 0 0 chr6 16397288 16397312 -166017930 + GC_rich Low_complexity Low_complexity 1 24 0 852 138 0 0 chr6 16399063 16399186 -166016056 - FLAM_C SINE Alu -16 127 5 1138 99 152 0 chr6 16399732 16399903 -166015339 + AluSx SINE Alu 1 197 -115 598 184 39 0 chr6 16499923 16500026 -165915216 - U6 snRNA snRNA 0 107 1 1147 191 89 68 chr6 16500046 16500339 -165914903 - AluJo SINE Alu 0 302 4 1588 217 99 14 chr6 16501232 16501665 -165913577 + Charlie1b DNA MER1_type 1 470 -53 249 240 219 0 chr6 16501677 16501773 -165913469 - L1MC5 LINE L1 -91 7870 7754 1185 195 61 12 chr6 16501798 16502044 -165913198 - AluJo SINE Alu -54 258 1 1698 186 3 0 chr6 16502058 16502353 -165912889 - AluSx SINE Alu -15 297 2 492 163 0 0 chr6 16502797 16502877 -165912365 - AluJ/FRAM SINE Alu -12 300 221 333 118 0 0 chr6 16503082 16503133 -165912109 + (TG)n Simple_repeat Simple_repeat 1 51 0 231 225 38 75 chr6 16503856 16503936 -165911306 - MIR SINE MIR -13 249 173 233 290 30 53 chr6 16503965 16504096 -165911146 + MIR SINE MIR 95 222 -40 1765 182 19 10 chr6 16506610 16506918 -165908324 + AluJb SINE Alu 1 311 -1 494 171 19 38 chr6 16507024 16507129 -165908113 + L1MC2 LINE L1 6060 6162 -182 1754 86 189 0 chr6 16507137 16507381 -165907861 + AluSp SINE Alu 1 290 -13 369 161 195 0 chr6 16507392 16507479 -165907763 + Tigger7 DNA MER2_type 9 112 -621 1491 158 62 121 chr6 16508413 16508484 -165906758 - L1MB7 LINE L1 0 6184 6110 2410 50 33 3 chr6 16508484 16508784 -165906458 - AluY SINE Alu -1 310 2 1491 158 62 121 chr6 16508784 16509110 -165906132 - L1MB7 LINE L1 -74 6110 5815 785 158 0 8 chr6 16509110 16509243 -165905999 - L1MB4 LINE L1 -6 6174 6043 1491 158 62 121 chr6 16509243 16509299 -165905943 - L1MB7 LINE L1 -369 5815 5757 1997 141 6 10 chr6 16510640 16510953 -165904289 - AluSx SINE Alu 0 312 1 1334 186 61 11 chr6 16511369 16511633 -165903609 + AluJo SINE Alu 6 282 -30 348 83 0 0 chr6 16511639 16511687 -165903555 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 680 137 23 61 chr6 16512261 16512392 -165902850 - FLAM_C SINE Alu -8 135 10 253 132 0 0 chr6 16512567 16512605 -165902637 - LTR1 LTR ERV1 0 785 748 13319 153 41 33 chr6 16512719 16515092 -165900150 + HUERS-P2 LTR ERV1 208 2679 -409 2260 91 10 0 chr6 16515092 16515388 -165899854 - AluSp SINE Alu -14 299 1 13319 153 41 33 chr6 16515388 16515518 -165899724 + HUERS-P2 LTR ERV1 2679 2806 -282 1084 167 0 0 chr6 16515519 16515693 -165899549 - AluSg/x SINE Alu -18 292 119 199 192 0 25 chr6 16515827 16515873 -165899369 - MIR SINE MIR -63 145 105 2100 98 9 68 chr6 16518479 16518804 -165896438 + AluSq SINE Alu 1 306 -7 234 0 0 0 chr6 16519658 16519684 -165895558 + (T)n Simple_repeat Simple_repeat 1 26 0 324 182 83 58 chr6 16520030 16520151 -165895091 - L1MB8 LINE L1 -9 6169 6046 21 0 0 0 chr6 16520391 16520412 -165894830 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 16521128 16521161 -165894081 + AT_rich Low_complexity Low_complexity 1 33 0 269 246 0 16 chr6 16521433 16521494 -165893748 + MIR SINE MIR 43 102 -160 2079 124 7 0 chr6 16522293 16522583 -165892659 - AluSg SINE Alu -14 296 5 1057 163 54 128 chr6 16523280 16523593 -165891649 - AluJb SINE Alu -11 291 2 25 53 0 18 chr6 16523608 16523637 -165891605 + AT_rich Low_complexity Low_complexity 1 30 -26 2283 108 0 0 chr6 16523637 16523943 -165891299 - AluSg SINE Alu -4 306 1 25 53 0 18 chr6 16523943 16523970 -165891272 + AT_rich Low_complexity Low_complexity 30 56 0 25 0 0 0 chr6 16524019 16524044 -165891198 + AT_rich Low_complexity Low_complexity 1 25 0 808 271 114 41 chr6 16526115 16526555 -165888687 + HsTC2 DNA Tc2 105 576 -1322 226 235 174 0 chr6 16527000 16527098 -165888144 + MIR SINE MIR 36 150 -58 1887 198 52 20 chr6 16528429 16528888 -165886354 - L1MB8 LINE L1 -344 5834 5361 1502 204 96 18 chr6 16529624 16530020 -165885222 + MLT1D LTR MaLR 79 505 0 238 181 179 14 chr6 16530151 16530238 -165885004 - MIR SINE MIR -71 137 38 183 100 50 50 chr6 16530416 16530456 -165884786 - L2 LINE L2 -218 3054 3015 180 0 0 0 chr6 16530767 16530787 -165884455 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 1583 202 84 46 chr6 16531078 16531171 -165884071 - L1MB5 LINE L1 -17 6157 6069 1951 147 3 0 chr6 16531171 16531464 -165883778 - AluSx SINE Alu -18 294 1 1583 202 84 46 chr6 16531464 16531899 -165883343 - L1MB5 LINE L1 -105 6069 5577 942 253 169 27 chr6 16531486 16532011 -165883231 - L1MC4 LINE L1 -1993 6049 5450 * 2113 133 10 0 chr6 16532286 16532594 -165882648 + AluSx SINE Alu 1 311 -1 1615 166 95 0 chr6 16535257 16535540 -165879702 - AluSq SINE Alu -3 310 1 31 58 0 0 chr6 16535694 16535746 -165879496 + AT_rich Low_complexity Low_complexity 1 52 0 1958 124 14 21 chr6 16535746 16536036 -165879206 - AluSg SINE Alu -22 288 1 1363 197 3 72 chr6 16536038 16536358 -165878884 - AluJo SINE Alu -14 298 1 559 274 181 0 chr6 16536658 16536950 -165878292 + L2 LINE L2 2429 2773 -541 1748 156 44 3 chr6 16537446 16537741 -165877501 - AluSx SINE Alu -5 307 1 271 192 19 0 chr6 16538821 16538873 -165876369 + MER5A DNA MER1_type 1 53 -136 183 250 0 0 chr6 16538902 16538950 -165876292 + MER5A DNA MER1_type 132 179 -10 743 224 87 20 chr6 16540325 16540521 -165874721 + MER3 DNA MER1_type 1 209 0 195 125 0 0 chr6 16542052 16542092 -165873150 + (G)n Simple_repeat Simple_repeat 1 40 0 211 268 14 0 chr6 16542750 16542821 -165872421 - L3 LINE CR1 -166 1411 1340 271 289 24 12 chr6 16544129 16544212 -165871030 + L3 LINE CR1 1127 1210 -367 290 261 231 0 chr6 16544420 16544554 -165870688 - MER5A DNA MER1_type 0 189 25 334 200 60 10 chr6 16545671 16545771 -165869471 - L2 LINE L2 -4 3268 3164 2299 61 16 39 chr6 16545884 16546194 -165869048 - AluY SINE Alu -8 303 1 1968 114 21 11 chr6 16547926 16548207 -165867035 - AluSg SINE Alu -26 284 1 2108 136 3 0 chr6 16548251 16548560 -165866682 - AluSg SINE Alu 0 310 1 1738 164 0 27 chr6 16551992 16552284 -165862958 + AluJo SINE Alu 6 289 -23 254 290 14 0 chr6 16552500 16552569 -165862673 + (TG)n Simple_repeat Simple_repeat 1 70 0 2227 89 123 0 chr6 16552699 16553015 -165862227 - THE1A LTR MaLR 0 355 1 951 132 0 0 chr6 16553053 16553182 -165862060 - AluSg SINE Alu -46 266 138 263 132 0 118 chr6 16553182 16553250 -165861992 + AluJo SINE Alu 94 153 -149 849 132 0 0 chr6 16553254 16553375 -165861867 - AluSg SINE Alu -179 131 11 2183 109 3 13 chr6 16553428 16553740 -165861502 - AluSc SINE Alu 0 309 1 25 0 0 0 chr6 16553743 16553768 -165861474 + AT_rich Low_complexity Low_complexity 1 25 0 228 304 0 88 chr6 16554108 16554210 -165861032 - MIR SINE MIR -95 113 21 418 238 186 26 chr6 16555226 16555419 -165859823 - MIR SINE MIR -18 244 21 2013 123 3 14 chr6 16555603 16555888 -165859354 - AluSx SINE Alu -30 282 1 193 54 0 54 chr6 16556564 16556601 -165858641 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2227 48 62 24 chr6 16556625 16556917 -165858325 + AluY SINE Alu 1 303 -8 429 179 123 49 chr6 16557349 16557511 -165857731 - MER104 DNA Tc2 0 180 7 1942 112 76 0 chr6 16557555 16557832 -165857410 + AluSg SINE Alu 1 298 -12 251 234 13 26 chr6 16558109 16558186 -165857056 - MIR3 SINE MIR -7 201 126 672 217 16 0 chr6 16558722 16558851 -165856391 - FLAM_A SINE Alu -1 132 2 382 270 123 10 chr6 16558936 16559140 -165856102 + L2 LINE L2 1584 1810 -1504 2234 104 13 0 chr6 16559349 16559647 -165855595 - AluSp SINE Alu -11 302 1 1169 186 53 0 chr6 16559649 16559875 -165855367 - AluJo SINE Alu -9 303 66 248 259 43 86 chr6 16559944 16560106 -165855136 + L2 LINE L2 2323 2477 -837 1035 181 111 48 chr6 16560145 16560415 -165854827 - AluJb SINE Alu -14 298 12 270 343 97 23 chr6 16560468 16560978 -165854264 + L2 LINE L2 2562 3149 -164 50 71 0 0 chr6 16561018 16561117 -165854125 + AT_rich Low_complexity Low_complexity 1 99 0 293 319 0 14 chr6 16561690 16561804 -165853438 - MIR SINE MIR -97 111 3 240 184 0 0 chr6 16561804 16561853 -165853389 + CT-rich Low_complexity Low_complexity 6 54 0 189 74 0 0 chr6 16561858 16561885 -165853357 + (TG)n Simple_repeat Simple_repeat 2 28 0 307 202 123 97 chr6 16562040 16562175 -165853067 - FLAM_C SINE Alu 0 138 1 691 222 247 45 chr6 16562853 16563145 -165852097 - MLT1B LTR MaLR 0 390 24 231 165 24 35 chr6 16564126 16564211 -165851031 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 849 177 39 28 chr6 16564747 16564928 -165850314 - AluJb SINE Alu -45 267 85 375 23 0 0 chr6 16567593 16567637 -165847605 + (TG)n Simple_repeat Simple_repeat 2 45 0 627 241 31 42 chr6 16568113 16568234 -165847008 + MER3 DNA MER1_type 5 125 -84 2132 122 3 10 chr6 16568234 16568538 -165846704 - AluSq SINE Alu -11 302 1 627 241 31 42 chr6 16568538 16568607 -165846635 + MER3 DNA MER1_type 125 193 -16 255 194 56 14 chr6 16569234 16569306 -165845936 + L1ME4a LINE L1 5964 6038 -83 1330 186 68 21 chr6 16569886 16570166 -165845076 + AluJb SINE Alu 4 296 -16 226 286 48 0 chr6 16570704 16570767 -165844475 - L1ME LINE L1 -537 5584 5519 1569 124 120 8 chr6 16570868 16571118 -165844124 - AluY SINE Alu -33 278 1 988 109 0 0 chr6 16571121 16571249 -165843993 - AluSp SINE Alu -181 132 5 1820 124 4 4 chr6 16571250 16571508 -165843734 - AluSc SINE Alu -43 266 9 209 147 0 0 chr6 16571892 16571926 -165843316 - MIR SINE MIR -113 149 116 21 0 0 0 chr6 16572022 16572043 -165843199 + AT_rich Low_complexity Low_complexity 1 21 0 612 184 0 9 chr6 16572054 16572168 -165843074 - Tigger7 DNA MER2_type 0 2487 2375 821 213 63 6 chr6 16572183 16572357 -165842885 - Tigger7 DNA MER2_type -519 186 3 406 273 48 94 chr6 16573237 16573611 -165841631 + L1ME3A LINE L1 5532 5888 -282 263 303 10 10 chr6 16574870 16574969 -165840273 + MIR3 SINE MIR 76 174 -34 204 214 0 0 chr6 16575040 16575096 -165840146 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 207 237 34 0 chr6 16575216 16575275 -165839967 + MIR SINE MIR 157 217 -45 226 239 0 0 chr6 16576438 16576484 -165838758 + CT-rich Low_complexity Low_complexity 2 47 0 198 0 0 0 chr6 16577452 16577474 -165837768 + (T)n Simple_repeat Simple_repeat 1 22 0 486 0 0 0 chr6 16580073 16580127 -165835115 + (CA)n Simple_repeat Simple_repeat 1 54 0 2161 114 0 0 chr6 16581707 16581988 -165833254 + AluSc SINE Alu 1 281 -28 1353 177 32 35 chr6 16582531 16582814 -165832428 + AluJo SINE Alu 1 282 -30 212 186 0 66 chr6 16582841 16582944 -165832298 + MER5A DNA MER1_type 20 188 -1 1859 157 42 0 chr6 16583535 16583822 -165831420 + AluJo SINE Alu 1 299 -13 565 229 199 19 chr6 16584077 16584344 -165830898 - MER33 DNA MER1_type -1 323 9 281 344 39 0 chr6 16585968 16586096 -165829146 - Charlie8 DNA MER1_type -2208 209 77 1870 152 22 4 chr6 16587879 16588155 -165827087 - AluSx SINE Alu -30 282 2 2294 89 23 0 chr6 16588562 16588865 -165826377 - AluSp SINE Alu -2 311 2 694 236 46 6 chr6 16588953 16589127 -165826115 - MSTD LTR MaLR 0 396 216 748 196 5 73 chr6 16589137 16589341 -165825901 - AluJo SINE Alu 0 312 123 970 142 13 7 chr6 16589341 16589496 -165825746 - MSTD LTR MaLR -237 159 4 21 82 0 0 chr6 16590318 16590367 -165824875 + AT_rich Low_complexity Low_complexity 1 49 0 6315 79 9 61 chr6 16590368 16591373 -165823869 - SVA Other Other -1 1385 433 5919 62 22 66 chr6 16591390 16592296 -165822946 - SVA Other Other -520 866 1 350 260 29 0 chr6 16592881 16592985 -165822257 + MIR SINE MIR 91 197 -65 1577 186 7 20 chr6 16593009 16593304 -165821938 + AluJb SINE Alu 1 291 -21 2069 94 20 10 chr6 16593770 16594068 -165821174 - AluSc SINE Alu -8 301 1 303 207 117 69 chr6 16595011 16595156 -165820086 - L1MEc LINE L1 -4646 1750 1599 2177 282 167 27 chr6 16595178 16595693 -165819549 - L1MEc LINE L1 -4759 1637 1196 2232 83 11 0 chr6 16595693 16595970 -165819272 + AluSg SINE Alu 18 297 -13 2177 282 167 27 chr6 16595970 16596881 -165818361 - L1MEc LINE L1 -5200 1196 11 1725 167 10 19 chr6 16598539 16598851 -165816391 - AluJb SINE Alu -3 309 1 822 165 0 0 chr6 16599688 16599821 -165815421 - FLAM_C SINE Alu 0 133 1 2199 98 0 3 chr6 16600129 16600444 -165814798 + AluSp SINE Alu 1 314 0 394 252 0 66 chr6 16600451 16600602 -165814640 - MIR SINE MIR -10 252 112 1179 205 151 29 chr6 16600982 16601333 -165813909 + MSTD LTR MaLR 1 394 -2 2669 49 0 6 chr6 16603830 16604157 -165811085 - L1PA5 LINE L1 -8 6146 5822 2146 134 0 0 chr6 16604178 16604484 -165810758 + AluSx SINE Alu 2 307 -5 1572 184 7 32 chr6 16604808 16605118 -165810124 - AluJo SINE Alu -6 306 5 1307 83 47 156 chr6 16607584 16607700 -165807542 - MER51A LTR ERV1 0 634 507 1775 155 14 4 chr6 16607700 16607977 -165807265 + AluSx SINE Alu 1 280 -32 1307 83 47 156 chr6 16607977 16607999 -165807243 - MER51A LTR ERV1 -127 507 484 291 28 0 0 chr6 16607999 16608035 -165807207 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1307 83 47 156 chr6 16608035 16608171 -165807071 - MER51A LTR ERV1 -150 484 389 457 101 157 22 chr6 16608227 16608316 -165806926 - MER51A LTR ERV1 -529 105 5 967 212 0 11 chr6 16608456 16608645 -165806597 - MER5A DNA MER1_type 0 189 3 369 0 0 0 chr6 16608964 16609005 -165806237 + (TG)n Simple_repeat Simple_repeat 2 42 0 450 0 0 0 chr6 16609475 16609525 -165805717 + (TG)n Simple_repeat Simple_repeat 2 51 0 27 0 0 0 chr6 16609693 16609720 -165805522 + AT_rich Low_complexity Low_complexity 1 27 0 258 364 130 5 chr6 16610759 16610943 -165804299 - L1MEd LINE L1 -5456 663 457 28 0 0 0 chr6 16611263 16611291 -165803951 + AT_rich Low_complexity Low_complexity 1 28 0 3732 134 96 23 chr6 16611479 16612211 -165803031 - LTR1 LTR ERV1 0 785 1 313 218 20 59 chr6 16613117 16613218 -165802024 - MER34 LTR ERV1 -14 528 432 881 74 0 0 chr6 16613266 16613374 -165801868 + AluSc SINE Alu 190 297 -12 2129 123 0 10 chr6 16614300 16614602 -165800640 + AluSx SINE Alu 1 299 -13 1756 83 46 12 chr6 16617319 16617592 -165797650 - AluSq SINE Alu 0 313 44 198 0 0 0 chr6 16620289 16620311 -165794931 + (T)n Simple_repeat Simple_repeat 1 22 0 404 221 147 32 chr6 16624383 16624573 -165790669 + MER5C DNA MER1_type 77 288 -36 1475 158 15 85 chr6 16624917 16625247 -165789995 + AluJo SINE Alu 1 307 -5 2367 98 0 0 chr6 16625716 16626022 -165789220 - AluSq SINE Alu -6 307 2 1788 103 0 66 chr6 16626419 16626690 -165788552 + AluSx SINE Alu 1 253 -59 219 36 0 0 chr6 16626693 16626721 -165788521 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 21 57 0 0 chr6 16628541 16628576 -165786666 + AT_rich Low_complexity Low_complexity 1 35 0 1199 252 121 34 chr6 16628611 16629175 -165786067 - L1MC4 LINE L1 -184 7858 7246 * 1455 226 55 30 chr6 16629159 16629693 -165785549 - L1MC4 LINE L1 -800 7080 6455 1445 158 6 76 chr6 16630016 16630332 -165784910 - AluJo SINE Alu -13 299 6 633 233 25 0 chr6 16630602 16630765 -165784477 + FRAM SINE Alu 1 165 -11 1331 118 126 0 chr6 16630816 16631054 -165784188 - L1MA5A LINE L1 0 6297 6030 2345 78 14 0 chr6 16631097 16631380 -165783862 - AluSx SINE Alu -24 288 2 342 236 186 67 chr6 16632444 16632804 -165782438 - L1ME4a LINE L1 0 6121 5719 222 267 35 12 chr6 16634615 16634701 -165780541 + MIR SINE MIR 90 177 -85 1675 188 24 18 chr6 16634759 16635100 -165780142 + MER2 DNA MER2_type 2 344 0 2155 103 0 14 chr6 16636234 16636558 -165778684 - AluSx SINE Alu 0 320 1 236 304 0 0 chr6 16637741 16637820 -165777422 - MER113 DNA MER1_type? -442 79 1 2076 148 0 3 chr6 16638974 16639285 -165775957 - AluSq SINE Alu -3 310 1 1735 170 11 0 chr6 16640725 16641007 -165774235 + AluJo SINE Alu 1 285 -27 2366 85 0 7 chr6 16641329 16641657 -165773585 - AluSx SINE Alu 0 312 1 1461 150 118 0 chr6 16643117 16643371 -165771871 + AluJo SINE Alu 5 288 -24 21 0 0 0 chr6 16643788 16643809 -165771433 + AT_rich Low_complexity Low_complexity 1 21 0 730 145 13 0 chr6 16644814 16644966 -165770276 + CT-rich Low_complexity Low_complexity 1 154 0 1126 84 0 89 chr6 16644977 16645167 -165770075 - AluY SINE Alu -3 308 136 2393 71 0 3 chr6 16645450 16645745 -165769497 + AluSc SINE Alu 1 294 -15 61 15 0 0 chr6 16647531 16647599 -165767643 + AT_rich Low_complexity Low_complexity 1 68 0 278 239 0 57 chr6 16650032 16650120 -165765122 + MIR SINE MIR 69 151 -111 189 0 0 0 chr6 16653058 16653079 -165762163 + (T)n Simple_repeat Simple_repeat 1 21 0 227 221 63 87 chr6 16653770 16653897 -165761345 + MIR SINE MIR 59 182 -80 238 139 0 0 chr6 16653940 16653976 -165761266 + MER2 DNA MER2_type 310 345 0 2142 105 20 3 chr6 16654224 16654518 -165760724 - AluSq SINE Alu -14 299 1 3596 216 102 50 chr6 16657825 16659058 -165756184 - Charlie1a DNA MER1_type -4 1451 155 1770 190 53 30 chr6 16659117 16659548 -165755694 - L1MB7 LINE L1 -336 5848 5408 636 234 32 6 chr6 16659548 16659706 -165755536 - Charlie1a DNA MER1_type -1293 162 1 215 206 294 0 chr6 16660170 16660238 -165755004 - MIR SINE MIR -116 146 59 681 197 204 29 chr6 16660945 16661219 -165754023 + L1MA7 LINE L1 5991 6312 0 270 324 0 19 chr6 16662080 16662185 -165753057 + MIR SINE MIR 158 260 -2 264 27 0 0 chr6 16662360 16662397 -165752845 - AluY SINE Alu -2 299 263 1909 130 67 28 chr6 16662438 16662799 -165752443 - THE1C LTR MaLR 0 375 1 206 182 18 36 chr6 16665395 16665450 -165749792 + CT-rich Low_complexity Low_complexity 3 56 0 230 321 107 0 chr6 16668799 16668930 -165746312 + MER5B DNA MER1_type 34 178 0 643 199 45 0 chr6 16669780 16669936 -165745306 + MER5A DNA MER1_type 1 163 -26 231 299 44 29 chr6 16669814 16669951 -165745291 - MER5A DNA MER1_type -27 162 24 * 2205 73 29 4 chr6 16669967 16670242 -165745000 - AluY SINE Alu -10 301 20 2361 46 42 7 chr6 16672934 16673219 -165742023 + AluY SINE Alu 2 296 -15 1703 161 29 29 chr6 16673368 16673678 -165741564 - MLT1B LTR MaLR -79 311 2 206 133 0 44 chr6 16675912 16675957 -165739285 + (TGAG)n Simple_repeat Simple_repeat 4 46 0 181 333 120 26 chr6 16676133 16676250 -165738992 + L2 LINE L2 2959 3086 -227 339 245 71 0 chr6 16676300 16676398 -165738844 + L2 LINE L2 3203 3307 -6 548 196 98 0 chr6 16677109 16677242 -165738000 - MSTD LTR MaLR 0 396 251 429 277 90 28 chr6 16679096 16679273 -165735969 + L2 LINE L2 3121 3308 -5 859 219 93 12 chr6 16682270 16682517 -165732725 - L1MB3 LINE L1 -284 5899 5633 228 75 0 50 chr6 16684227 16684267 -165730975 - L1M4 LINE L1 -743 5403 5366 267 31 0 0 chr6 16684319 16684351 -165730891 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 681 179 62 34 chr6 16690236 16690415 -165724827 - MLT1B LTR MaLR -205 185 2 1098 184 161 19 chr6 16690598 16690865 -165724377 - AluJb SINE Alu -7 305 1 1249 159 174 15 chr6 16691065 16691329 -165723913 + AluJo SINE Alu 1 306 -6 1357 102 255 4 chr6 16691329 16691564 -165723678 + AluSg SINE Alu 3 296 -4 2181 99 10 7 chr6 16694041 16694335 -165720907 - AluSx SINE Alu -17 295 1 25 31 0 0 chr6 16695826 16695858 -165719384 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chr6 16696234 16696260 -165718982 + (CA)n Simple_repeat Simple_repeat 2 27 0 228 67 0 0 chr6 16696625 16696655 -165718587 + (A)n Simple_repeat Simple_repeat 1 30 0 280 174 29 58 chr6 16697785 16697854 -165717388 - 5S rRNA rRNA -54 67 1 352 194 194 19 chr6 16700872 16700980 -165714262 + L1ME3A LINE L1 518 644 -5475 592 313 127 41 chr6 16701119 16701810 -165713432 + L1ME3A LINE L1 739 1562 -928 341 239 102 68 chr6 16702453 16702746 -165712496 + L1ME3A LINE L1 2115 2417 -3712 283 267 143 24 chr6 16702901 16703111 -165712131 + L1ME3A LINE L1 2771 3005 -3124 1085 170 14 19 chr6 16703810 16704022 -165711220 - MER20 DNA MER1_type -5 214 4 522 276 79 71 chr6 16704133 16704345 -165710897 + L1ME3A LINE L1 5423 5632 -521 590 200 213 0 chr6 16704345 16704500 -165710742 + MER5A DNA MER1_type 2 189 0 522 276 79 71 chr6 16704500 16704556 -165710686 + L1ME3A LINE L1 5632 5686 -467 1924 143 10 3 chr6 16704556 16704849 -165710393 + AluJo SINE Alu 1 295 -17 522 276 79 71 chr6 16704849 16705004 -165710238 + L1ME3A LINE L1 5686 5851 -302 1402 203 34 23 chr6 16706455 16706805 -165708437 + MLT1A2 LTR MaLR 4 357 -17 2466 91 0 0 chr6 16707178 16707485 -165707757 - AluSc SINE Alu -2 307 1 503 312 142 15 chr6 16707914 16708251 -165706991 + L1ME4a LINE L1 5732 6111 -10 2337 93 10 0 chr6 16708251 16708552 -165706690 - AluSx SINE Alu -8 304 1 275 287 127 77 chr6 16709150 16709488 -165705754 + L2 LINE L2 2909 3263 -9 1494 154 54 109 chr6 16709489 16709912 -165705330 + L1MB3 LINE L1 5781 6180 -3 2392 77 0 46 chr6 16709923 16710250 -165704992 + AluSx SINE Alu 1 312 0 1698 139 113 29 chr6 16710570 16710874 -165704368 + THE1C LTR MaLR 1 339 -36 2044 128 3 24 chr6 16710874 16711170 -165704072 - AluSx SINE Alu -22 290 1 1698 139 113 29 chr6 16711170 16711211 -165704031 + THE1C LTR MaLR 339 375 0 9578 119 39 48 chr6 16711211 16712692 -165702550 + THE1C-int LTR MaLR 1 1467 -113 2059 125 0 33 chr6 16712692 16712996 -165702246 + AluSg SINE Alu 1 294 -16 9578 119 39 48 chr6 16712996 16713109 -165702133 + THE1C-int LTR MaLR 1467 1580 0 1687 156 95 12 chr6 16713109 16713455 -165701787 + THE1C LTR MaLR 1 375 0 1489 246 36 24 chr6 16713695 16714162 -165701080 + MLT1E3 LTR MaLR 139 611 -13 288 303 132 24 chr6 16715151 16715402 -165699840 + LTR16C LTR ERVL 187 464 -27 287 316 44 37 chr6 16715449 16715585 -165699657 + MIR SINE MIR 126 262 0 2342 88 0 3 chr6 16716200 16716495 -165698747 - AluY SINE Alu -17 294 1 2277 120 0 0 chr6 16717914 16718223 -165697019 - AluSc SINE Alu 0 309 1 2118 129 0 26 chr6 16718251 16718553 -165696689 - AluSx SINE Alu -18 294 1 626 234 164 12 chr6 16718774 16719020 -165696222 - L1MD3 LINE L1 0 7995 6087 257 91 45 0 chr6 16719065 16719109 -165696133 + LTR10B LTR ERV1 6 51 -496 2474 129 137 6 chr6 16719132 16719614 -165695628 + LTR10A LTR ERV1 1 545 -64 2310 194 34 2 chr6 16719656 16720129 -165695113 - L1MD3 LINE L1 -382 5977 5490 1025 169 0 11 chr6 16720163 16720352 -165694890 + MER46A DNA MER2_type 41 227 -9 2503 76 0 3 chr6 16721614 16721918 -165693324 - AluSg SINE Alu -7 303 1 231 114 0 0 chr6 16722462 16722497 -165692745 + (T)n Simple_repeat Simple_repeat 1 35 0 648 220 90 34 chr6 16722813 16722990 -165692252 - MER5A DNA MER1_type 0 189 3 453 19 0 0 chr6 16723982 16724036 -165691206 + (CA)n Simple_repeat Simple_repeat 2 55 0 21 71 0 0 chr6 16724465 16724507 -165690735 + AT_rich Low_complexity Low_complexity 1 42 0 2422 83 0 19 chr6 16724758 16725071 -165690171 + AluSg SINE Alu 1 307 -3 190 283 188 52 chr6 16727068 16727340 -165687902 + L2 LINE L2 2955 3263 -9 751 171 0 0 chr6 16728059 16728176 -165687066 + FLAM_C SINE Alu 1 117 -26 851 92 0 0 chr6 16728736 16728856 -165686386 - MER72 LTR ERV1 -44 678 559 1121 200 48 102 chr6 16729319 16729805 -165685437 + MER39 LTR ERV1 1 471 -94 655 209 8 8 chr6 16729805 16729934 -165685308 - FLAM_C SINE Alu -2 131 3 1121 200 48 102 chr6 16729934 16730019 -165685223 + MER39 LTR ERV1 471 559 -6 4240 131 20 6 chr6 16730019 16730721 -165684521 - MER72 LTR ERV1 0 722 11 3821 114 38 22 chr6 16730853 16731478 -165683764 + MER41B LTR ERV1 1 635 0 2898 149 127 69 chr6 16731478 16731737 -165683505 + MER41B-int LTR ERV1 1 244 -5702 2353 88 7 0 chr6 16731737 16732033 -165683209 - AluSq SINE Alu -15 298 1 2898 149 127 69 chr6 16732033 16732466 -165682776 + MER41B-int LTR ERV1 244 733 -5213 * 8763 125 48 22 chr6 16732462 16733827 -165681415 + MER41B-int LTR ERV1 3025 4441 -1505 2300 92 17 0 chr6 16733827 16734120 -165681122 - AluSx SINE Alu -14 298 1 8763 125 48 22 chr6 16734120 16734370 -165680872 + MER41B-int LTR ERV1 4441 4683 -1263 8425 121 11 6 chr6 16734370 16735579 -165679663 + HSMAR1 DNA Mariner 1 1219 -68 2262 89 10 0 chr6 16735579 16735870 -165679372 + AluY SINE Alu 1 294 -17 8425 121 11 6 chr6 16735870 16735935 -165679307 + HSMAR1 DNA Mariner 1219 1282 -5 7743 117 13 23 chr6 16735935 16737206 -165678036 + MER41B-int LTR ERV1 4688 5946 0 3939 127 16 19 chr6 16737207 16737843 -165677399 + MER41B LTR ERV1 2 635 0 505 241 54 42 chr6 16738368 16738534 -165676708 + L2 LINE L2 2578 2745 -569 346 269 152 6 chr6 16738602 16738773 -165676469 + L2 LINE L2 2864 3059 -213 3540 188 28 38 chr6 16738812 16738944 -165676298 + L1MB7 LINE L1 5032 5164 -1020 3541 119 6 20 chr6 16738944 16739329 -165675913 + LTR26B LTR ERV1 1 377 -154 2017 109 32 51 chr6 16739329 16739640 -165675602 + AluSx SINE Alu 1 305 -7 3541 119 6 20 chr6 16739640 16739793 -165675449 + LTR26B LTR ERV1 377 531 0 3540 188 28 38 chr6 16739793 16739950 -165675292 + L1MB7 LINE L1 5164 5321 -863 2149 141 0 3 chr6 16739950 16740262 -165674980 - AluSx SINE Alu -1 311 1 3540 188 28 38 chr6 16740262 16740386 -165674856 + L1MB7 LINE L1 5321 5445 -739 1537 186 41 0 chr6 16740386 16740676 -165674566 + AluJo SINE Alu 1 302 -10 3540 188 28 38 chr6 16740676 16741411 -165673831 + L1MB7 LINE L1 5445 6174 -10 433 244 158 30 chr6 16741554 16741580 -165673662 + MIR SINE MIR 20 41 -221 3956 148 58 70 chr6 16741580 16741602 -165673640 + MER4D LTR ERV1 1 22 -881 2651 3 0 3 chr6 16741602 16741890 -165673352 + AluYa5 SINE Alu 17 303 -8 3956 148 58 70 chr6 16741890 16742255 -165672987 + MER4D LTR ERV1 22 390 -513 1861 142 42 0 chr6 16742255 16742544 -165672698 - AluSx SINE Alu -11 301 1 3956 148 58 70 chr6 16742544 16742726 -165672516 + MER4D LTR ERV1 390 573 -330 1769 179 7 0 chr6 16742726 16743006 -165672236 + AluJo SINE Alu 1 282 -30 360 0 0 0 chr6 16743011 16743051 -165672191 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3956 148 58 70 chr6 16743051 16743387 -165671855 + MER4D LTR ERV1 577 903 0 433 244 158 30 chr6 16743387 16743524 -165671718 + MIR SINE MIR 41 204 -58 267 185 222 56 chr6 16743544 16743652 -165671590 + MER34 LTR ERV1 1 126 -416 * 1202 223 38 41 chr6 16743620 16744037 -165671205 + MER39 LTR ERV1 259 674 -33 418 116 0 43 chr6 16744057 16744126 -165671116 + Tigger2 DNA MER2_type 4 69 -2649 * 2248 133 76 19 chr6 16744116 16744538 -165670704 + Tigger2 DNA MER2_type 2273 2718 0 3659 119 22 22 chr6 16744574 16745196 -165670046 + LTR26E LTR ERV1 1 622 0 384 326 28 28 chr6 16745200 16745418 -165669824 + L2 LINE L2 2842 3059 -213 228 288 0 27 chr6 16745553 16745626 -165669616 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 1686 133 208 0 chr6 16745910 16746247 -165668995 + MER101 LTR ERV1 68 474 0 725 246 32 25 chr6 16746537 16746818 -165668424 + L1MC5 LINE L1 7634 7916 -45 198 270 216 9 chr6 16747271 16747382 -165667860 + L2 LINE L2 3138 3271 -1 458 272 174 0 chr6 16747674 16747858 -165667384 - MIR SINE MIR -10 252 37 542 219 138 81 chr6 16748071 16748283 -165666959 - MIR SINE MIR 0 262 33 1715 195 0 0 chr6 16748283 16748580 -165666662 - AluJb SINE Alu -10 302 6 542 219 138 81 chr6 16748580 16748614 -165666628 - MIR SINE MIR -229 33 2 588 179 57 0 chr6 16749090 16749196 -165666046 + AluSq/x SINE Alu 5 116 -197 2202 110 0 7 chr6 16749247 16749556 -165665686 - AluSg1 SINE Alu 0 309 3 2400 78 0 13 chr6 16751670 16751976 -165663266 - AluSx SINE Alu -10 302 1 271 160 0 0 chr6 16751987 16752037 -165663205 - MER113 DNA MER1_type? -321 200 151 1784 179 27 3 chr6 16752047 16752344 -165662898 + AluSx SINE Alu 1 304 -8 225 283 152 0 chr6 16752453 16752545 -165662697 - L2 LINE L2 -17 3296 3191 681 299 317 27 chr6 16752642 16754106 -165661136 - L2 LINE L2 -355 2959 1071 4982 124 50 16 chr6 16754329 16755077 -165660165 + L1MA5 LINE L1 5368 6154 -146 2301 99 3 10 chr6 16755077 16755381 -165659861 + AluSx SINE Alu 1 302 -10 4982 124 50 16 chr6 16755381 16755532 -165659710 + L1MA5 LINE L1 6154 6298 -2 248 337 77 12 chr6 16755786 16755955 -165659287 + L1ME4a LINE L1 5426 5605 -516 300 258 92 8 chr6 16756077 16756197 -165659045 + L1ME4a LINE L1 5831 5960 -161 190 262 0 0 chr6 16756329 16756371 -165658871 + L3 LINE CR1 893 934 -643 296 360 29 14 chr6 16756411 16756550 -165658692 + L3 LINE CR1 1058 1198 -379 2217 106 0 0 chr6 16756729 16757031 -165658211 - AluSg SINE Alu -8 302 1 2226 107 10 3 chr6 16757032 16757330 -165657912 - AluSx SINE Alu -10 302 3 396 263 105 12 chr6 16757810 16757928 -165657314 + MIR SINE MIR 9 135 -73 1968 135 0 10 chr6 16758536 16758832 -165656410 - AluJo SINE Alu -15 297 5 222 37 0 0 chr6 16760255 16760282 -165654960 + (T)n Simple_repeat Simple_repeat 1 27 0 183 100 0 0 chr6 16760507 16760537 -165654705 + (TA)n Simple_repeat Simple_repeat 1 30 0 432 0 0 0 chr6 16760618 16760666 -165654576 + (TA)n Simple_repeat Simple_repeat 2 49 0 235 307 131 88 chr6 16761951 16762709 -165652533 + L2 LINE L2 1560 2349 -965 1604 190 63 123 chr6 16762722 16763391 -165651851 + L1MB8 LINE L1 4396 5024 -1122 * 1765 186 0 3 chr6 16763388 16763733 -165651509 + L1MB8 LINE L1 5490 5833 -345 206 400 30 15 chr6 16763789 16763924 -165651318 + L2 LINE L2 2607 2743 -571 194 350 33 42 chr6 16764145 16764265 -165650977 + L2 LINE L2 2763 2881 -433 2069 124 0 17 chr6 16765489 16765787 -165649455 - AluSx SINE Alu -19 293 1 264 341 82 14 chr6 16765829 16766037 -165649205 + L2 LINE L2 1876 2097 -1217 1984 93 33 43 chr6 16766664 16766965 -165648277 - AluSx SINE Alu -14 298 1 338 298 53 30 chr6 16768101 16768232 -165647010 - MIR3 SINE MIR -33 175 42 2328 98 0 13 chr6 16769734 16770050 -165645192 + AluSx SINE Alu 1 312 0 2465 89 0 6 chr6 16770806 16771120 -165644122 - AluSx SINE Alu 0 312 1 239 341 57 63 chr6 16771476 16771793 -165643449 - L2 LINE L2 -575 2739 2425 1457 279 203 0 chr6 16771914 16772573 -165642669 + L2 LINE L2 1808 2600 -714 275 295 122 58 chr6 16772604 16772882 -165642360 - L2 LINE L2 -2 3311 3016 506 286 125 0 chr6 16774790 16774982 -165640260 - MIR SINE MIR -11 251 36 39 50 0 0 chr6 16775343 16775403 -165639839 + AT_rich Low_complexity Low_complexity 1 60 0 480 296 111 5 chr6 16775807 16776006 -165639236 + MIR SINE MIR 29 248 -14 421 345 141 21 chr6 16776084 16776707 -165638535 - L2 LINE L2 -613 2701 2004 1957 107 4 7 chr6 16777158 16777429 -165637813 + AluSp SINE Alu 44 313 0 437 206 0 0 chr6 16777540 16777613 -165637629 + FRAM/FAM SINE Alu 1 69 -107 216 0 0 0 chr6 16777634 16777658 -165637584 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr6 16778823 16778851 -165636391 + AT_rich Low_complexity Low_complexity 1 28 0 2385 236 95 29 chr6 16778959 16779827 -165635415 - L1MEc LINE L1 -5403 993 35 472 302 83 54 chr6 16780893 16781171 -165634071 + L2 LINE L2 2919 3204 -109 432 258 52 39 chr6 16782521 16782564 -165632678 + MER103 DNA DNA 3 44 -122 1946 132 42 0 chr6 16782564 16782852 -165632390 - AluSx SINE Alu -12 300 1 2292 108 0 0 chr6 16782858 16783154 -165632088 - AluSx SINE Alu -15 297 2 432 258 52 39 chr6 16783154 16783258 -165631984 + MER103 DNA DNA 48 159 -7 2867 259 126 75 chr6 16783422 16783894 -165631348 - HAL1 LINE L1 -64 2443 1997 225 0 0 0 chr6 16783894 16783919 -165631323 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2867 259 126 75 chr6 16783919 16784872 -165630370 - HAL1 LINE L1 -510 1997 875 2141 107 7 3 chr6 16784872 16785172 -165630070 - AluSg SINE Alu -9 301 1 2867 259 126 75 chr6 16785172 16785825 -165629417 - HAL1 LINE L1 -1632 875 257 13162 129 31 18 chr6 16785838 16787986 -165627256 + Tigger1 DNA MER2_type 237 2413 -5 403 154 173 19 chr6 16788167 16788271 -165626971 - MIR SINE MIR -20 242 123 213 351 106 39 chr6 16788325 16788533 -165626709 + L2 LINE L2 235 456 -2858 2235 101 19 3 chr6 16788579 16788886 -165626356 + AluSq SINE Alu 1 312 -1 2562 65 0 0 chr6 16788911 16789219 -165626023 - AluY SINE Alu -3 308 1 202 278 0 19 chr6 16789420 16789474 -165625768 + MER5A DNA MER1_type 8 60 -129 185 296 28 42 chr6 16789553 16789624 -165625618 + MER5B DNA MER1_type 85 154 -24 671 273 116 5 chr6 16790236 16790452 -165624790 - MIR SINE MIR -1 261 22 344 259 79 79 chr6 16791877 16792093 -165623149 - L2 LINE L2 -32 3240 3025 1702 125 16 22 chr6 16792312 16792633 -165622609 + L1PB4 LINE L1 4126 4444 -1702 604 163 98 24 chr6 16792633 16792756 -165622486 + AluJ SINE Alu 1 132 -180 3806 176 21 19 chr6 16792756 16793548 -165621694 + L1PB4 LINE L1 4469 5262 -884 581 135 23 60 chr6 16793538 16793671 -165621571 - L1M2 LINE L1 -631 5669 5542 * 1170 197 24 21 chr6 16793680 16794092 -165621150 + L1PB4 LINE L1 5267 6156 0 4786 129 38 5 chr6 16794097 16794908 -165620334 + L1MA5 LINE L1 5461 6298 -2 308 156 67 44 chr6 16794950 16795040 -165620202 + L1M4 LINE L1 5197 5288 -858 * 1058 174 38 9 chr6 16795035 16795247 -165619995 + L1MC3 LINE L1 7399 7616 -169 965 90 7 0 chr6 16795326 16795470 -165619772 - L1MA1 LINE L1 -104 6198 6054 757 154 24 0 chr6 16795918 16796041 -165619201 - FLAM_C SINE Alu -7 126 1 203 297 47 16 chr6 16796402 16796466 -165618776 + MIR SINE MIR 127 192 -70 799 169 11 71 chr6 16798956 16799139 -165616103 + AluJ SINE Alu 137 308 -4 256 308 48 19 chr6 16799562 16799666 -165615576 + L2 LINE L2 3144 3250 -22 * 492 322 60 0 chr6 16799665 16799864 -165615378 - MIR SINE MIR -31 231 21 584 273 98 5 chr6 16801695 16801889 -165613353 + MIR SINE MIR 51 262 0 710 174 0 0 chr6 16802322 16802437 -165612805 - FLAM_A SINE Alu -18 115 1 222 167 0 33 chr6 16803345 16803405 -165611837 + A-rich Low_complexity Low_complexity 2 59 0 294 273 156 0 chr6 16803567 16803695 -165611547 + L3b LINE CR1 1316 1463 -120 2347 103 0 3 chr6 16803949 16804260 -165610982 - AluSq SINE Alu -3 310 1 244 310 159 44 chr6 16804712 16804825 -165610417 - L2 LINE L2 0 3272 3147 22 56 0 0 chr6 16804921 16804957 -165610285 + AT_rich Low_complexity Low_complexity 1 36 0 697 289 75 4 chr6 16805169 16805408 -165609834 - MIR SINE MIR 0 262 7 330 226 89 86 chr6 16805778 16805943 -165609299 - MIR SINE MIR -65 143 18 2375 75 0 7 chr6 16806189 16806484 -165608758 + AluSc SINE Alu 1 293 -16 360 254 122 37 chr6 16807029 16807218 -165608024 - L1ME3A LINE L1 -310 5929 5725 271 268 60 27 chr6 16807301 16807432 -165607810 - L1ME3A LINE L1 -470 5720 5608 503 284 62 28 chr6 16807516 16807941 -165607301 - L1ME3A LINE L1 -676 5555 5072 294 261 43 0 chr6 16807970 16808062 -165607180 + L1M4 LINE L1 4101 4196 -1950 442 280 136 8 chr6 16808167 16808410 -165606832 - L1ME3A LINE L1 -2122 4093 3820 4942 128 186 14 chr6 16808728 16809616 -165605626 + Tigger1 DNA MER2_type 1376 2416 -2 1986 142 0 3 chr6 16809889 16810171 -165605071 - AluSx SINE Alu -31 281 1 340 308 88 28 chr6 16810398 16810580 -165604662 - L1ME3A LINE L1 -4579 1817 1625 2151 103 14 0 chr6 16810676 16810967 -165604275 - AluSx SINE Alu -12 300 6 1476 276 137 40 chr6 16811014 16811148 -165604094 - L1ME3A LINE L1 -4862 1343 1223 329 228 13 0 chr6 16811148 16811227 -165604015 - MER116 DNA Mariner 0 80 1 1476 276 137 40 chr6 16811227 16811711 -165603531 - L1ME3A LINE L1 -4982 1223 787 2283 99 14 0 chr6 16811711 16812004 -165603238 - AluSx SINE Alu -15 297 1 1476 276 137 40 chr6 16812004 16812335 -165602907 - L1ME3A LINE L1 -5418 787 489 189 0 0 0 chr6 16812335 16812356 -165602886 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1476 276 137 40 chr6 16812356 16812542 -165602700 - L1ME3A LINE L1 -5716 489 96 2977 193 30 25 chr6 16813419 16813687 -165601555 + L1MC4a LINE L1 6781 7046 -762 2244 88 28 0 chr6 16813687 16813971 -165601271 - AluSg SINE Alu -18 292 1 2977 193 30 25 chr6 16813971 16814391 -165600851 + L1MC4a LINE L1 7046 7473 -335 942 184 32 0 chr6 16814392 16814550 -165600692 - AluJb SINE Alu -13 299 137 1311 229 82 3 chr6 16814552 16814871 -165600371 + L1MC4a LINE L1 7465 7808 0 222 366 24 0 chr6 16815272 16815354 -165599888 + L2 LINE L2 3189 3272 0 2787 176 56 14 chr6 16816226 16816742 -165598500 + L1M4c LINE L1 29 566 -5818 189 0 0 0 chr6 16816771 16816792 -165598450 + (TTTTTG)n Simple_repeat Simple_repeat 6 26 0 316 350 87 60 chr6 16816794 16817128 -165598114 + L1MB2 LINE L1 12 354 -6495 13733 223 31 21 chr6 16817856 16821812 -165593430 + L1P4 LINE L1 394 4504 -1719 273 57 0 0 chr6 16821812 16821847 -165593395 + (CA)n Simple_repeat Simple_repeat 2 36 0 13733 223 31 21 chr6 16821847 16822875 -165592367 + L1P4 LINE L1 4504 5520 -703 597 143 44 118 chr6 16822880 16823083 -165592159 + L1MB2 LINE L1 1446 1633 -5217 5108 205 75 25 chr6 16823083 16824495 -165590747 + L1MB2 LINE L1 3924 5406 -1442 3305 186 40 17 chr6 16824504 16825228 -165590014 + L1MB2 LINE L1 6131 6871 -2 1980 113 7 35 chr6 16825825 16826135 -165589107 - AluSq SINE Alu -12 301 1 1431 156 18 0 chr6 16826135 16826483 -165588759 - L1M4 LINE L1 -738 5440 5089 23 33 0 0 chr6 16827695 16827725 -165587517 + AT_rich Low_complexity Low_complexity 1 30 0 1762 156 7 7 chr6 16827746 16828035 -165587207 - AluJo SINE Alu -23 289 1 185 216 81 0 chr6 16828130 16828167 -165587075 - L2 LINE L2 -11 3302 3263 1497 196 28 11 chr6 16828190 16828476 -165586766 - AluJo SINE Alu -21 291 1 524 263 84 22 chr6 16829332 16829511 -165585731 - MER91B DNA MER1_type 0 190 1 310 282 59 35 chr6 16830322 16830524 -165584718 + L1MC5 LINE L1 7528 7734 -227 1920 149 0 10 chr6 16830683 16830978 -165584264 - AluJo SINE Alu -20 292 1 244 281 0 0 chr6 16831139 16831221 -165584021 + A-rich Low_complexity Low_complexity 1 82 0 181 221 73 29 chr6 16831544 16831612 -165583630 + MIR SINE MIR 121 191 -71 1414 153 9 0 chr6 16832107 16832323 -165582919 + AluJb SINE Alu 87 304 -8 495 186 0 62 chr6 16833233 16833346 -165581896 + L2 LINE L2 3207 3312 -1 611 118 39 94 chr6 16835065 16835101 -165580141 - FLAM_A SINE Alu -169 142 106 2345 102 0 3 chr6 16835101 16835405 -165579837 - AluSg SINE Alu -7 303 1 611 118 39 94 chr6 16835405 16835495 -165579747 - FLAM_A SINE Alu -205 106 23 771 191 6 25 chr6 16836761 16836918 -165578324 + FRAM SINE Alu 1 154 -12 2062 76 47 4 chr6 16836931 16837207 -165578035 + AluSg SINE Alu 1 288 -22 439 251 129 12 chr6 16837392 16837555 -165577687 - MIR SINE MIR -52 210 29 461 204 164 7 chr6 16837562 16837714 -165577528 - MER5B DNA MER1_type -2 176 1 186 143 0 0 chr6 16838234 16838269 -165576973 + (CGGGG)n Simple_repeat Simple_repeat 3 37 0 265 291 17 8 chr6 16838488 16838605 -165576637 + C-rich Low_complexity Low_complexity 3 120 0 229 318 47 9 chr6 16838875 16838982 -165576260 + MIR SINE MIR 43 153 -109 * 1289 293 92 48 chr6 16838977 16839948 -165575294 + L2 LINE L2 1795 2807 -507 180 0 0 0 chr6 16840029 16840049 -165575193 + (T)n Simple_repeat Simple_repeat 1 20 0 890 138 12 12 chr6 16840319 16840479 -165574763 - MER96B DNA MER1_type? -20 397 238 349 245 11 11 chr6 16840539 16840633 -165574609 + L2 LINE L2 3178 3271 -1 22 88 0 0 chr6 16841442 16841499 -165573743 + AT_rich Low_complexity Low_complexity 1 57 0 2346 106 0 0 chr6 16841735 16842037 -165573205 - AluSx SINE Alu -9 303 2 485 232 155 13 chr6 16842129 16842284 -165572958 + MER5A DNA MER1_type 7 183 -6 7165 29 48 0 chr6 16842407 16843348 -165571894 + L1PA4 LINE L1 5174 6155 0 685 199 33 55 chr6 16844490 16844671 -165570571 - MER5B DNA MER1_type -1 177 1 210 23 70 23 chr6 16844947 16844990 -165570252 + T-rich Low_complexity Low_complexity 2 46 0 279 179 40 51 chr6 16845088 16845187 -165570055 + MER34 LTR ERV1 1 43 -499 1269 202 94 34 chr6 16845205 16845606 -165569636 + MER39 LTR ERV1 296 585 0 190 250 105 13 chr6 16846952 16847028 -165568214 - MIR SINE MIR -1 261 179 877 186 6 13 chr6 16847149 16847305 -165567937 + AluJb SINE Alu 137 291 -21 194 238 95 0 chr6 16849470 16849533 -165565709 - MIR3 SINE MIR -11 197 129 2185 114 7 0 chr6 16849690 16849987 -165565255 + AluSq SINE Alu 1 299 -14 269 217 76 22 chr6 16852041 16852133 -165563109 + LTR67 LTR ERVL 459 555 -2 330 283 131 16 chr6 16852887 16853078 -165562164 - MIR SINE MIR -10 252 40 763 298 119 34 chr6 16853262 16853530 -165561712 + MLT1F LTR MaLR 1 245 -297 225 0 0 0 chr6 16853530 16853555 -165561687 + (GA)n Simple_repeat Simple_repeat 1 25 0 763 298 119 34 chr6 16853555 16853780 -165561462 + MLT1F LTR MaLR 245 536 -6 521 306 39 6 chr6 16854441 16854621 -165560621 - MIR SINE MIR -64 198 13 2002 151 3 3 chr6 16854769 16855067 -165560175 - AluSq SINE Alu -15 298 1 27 0 0 0 chr6 16855926 16855953 -165559289 + AT_rich Low_complexity Low_complexity 1 27 0 357 265 10 0 chr6 16856006 16856104 -165559138 + MIR SINE MIR 51 149 -113 2221 112 23 7 chr6 16856449 16856752 -165558490 + AluSx SINE Alu 1 308 -4 2313 102 0 0 chr6 16856880 16857174 -165558068 - AluSx SINE Alu -18 294 1 655 122 9 19 chr6 16857298 16857405 -165557837 - L1PA11 LINE L1 -5 6169 6064 545 226 89 47 chr6 16857625 16857860 -165557382 + MIR SINE MIR 8 252 -10 251 264 217 0 chr6 16858901 16859007 -165556235 - L2 LINE L2 0 3272 3144 184 268 207 0 chr6 16859572 16859654 -165555588 + L2 LINE L2 3168 3266 -6 231 140 0 0 chr6 16859825 16859875 -165555367 + (CA)n Simple_repeat Simple_repeat 1 50 0 468 269 122 38 chr6 16860189 16860427 -165554815 - LTR16A1 LTR ERVL 0 457 200 1058 150 0 40 chr6 16860479 16860652 -165554590 + Charlie3 DNA MER1_type 2 167 -2543 3221 110 89 20 chr6 16860656 16861148 -165554094 + MER1A DNA MER1_type 1 526 -1 416 193 34 11 chr6 16861349 16861437 -165553805 + L2 LINE L2 2231 2320 -994 576 268 51 75 chr6 16861437 16861732 -165553510 - MLT1H LTR MaLR 0 549 262 211 182 0 0 chr6 16861733 16861766 -165553476 + polypurine Low_complexity Low_complexity 3 35 0 579 292 49 52 chr6 16861826 16862093 -165553149 - MER57B LTR ERV1 -168 266 1 551 192 88 0 chr6 16862093 16862218 -165553024 - MLT1H LTR MaLR -349 200 65 2283 36 4 14 chr6 16862299 16862578 -165552664 + AluY SINE Alu 17 292 -19 2468 71 0 13 chr6 16862855 16863163 -165552079 - AluY SINE Alu -7 304 1 604 168 69 0 chr6 16863198 16863329 -165551913 - HsTC2 DNA Tc2 -178 1720 1581 283 208 0 0 chr6 16863345 16863398 -165551844 - HsTC2 DNA Tc2 -542 1356 1304 430 266 141 8 chr6 16863415 16863543 -165551699 - HsTC2 DNA Tc2 -1753 145 1 2318 73 42 0 chr6 16863580 16863868 -165551374 - AluY SINE Alu -11 300 1 721 222 130 17 chr6 16864157 16864387 -165550855 + MER2 DNA MER2_type 89 344 -1 2226 119 0 0 chr6 16864431 16864724 -165550518 + AluSx SINE Alu 1 293 -19 34 24 0 0 chr6 16864781 16864822 -165550420 + AT_rich Low_complexity Low_complexity 1 41 0 1084 157 35 0 chr6 16864870 16865042 -165550200 + AluJb SINE Alu 109 286 -26 3643 156 19 3 chr6 16865066 16865657 -165549585 - L1MB5 LINE L1 -76 6098 5499 2122 96 0 4 chr6 16867568 16867869 -165547373 - AluSc SINE Alu 0 300 1 266 264 40 56 chr6 16868034 16868159 -165547083 - HAL1 LINE L1 -145 2362 2240 428 331 14 0 chr6 16868159 16868298 -165546944 - MIR SINE MIR -97 165 25 3802 102 10 142 chr6 16868327 16868658 -165546584 + LTR8 LTR ERV1 3 376 -315 2405 90 0 6 chr6 16868658 16868969 -165546273 + AluSg1 SINE Alu 1 309 0 3802 102 10 142 chr6 16868969 16869262 -165545980 + LTR8 LTR ERV1 376 502 -189 2652 55 0 0 chr6 16869262 16869573 -165545669 + AluY SINE Alu 1 311 0 3802 102 10 142 chr6 16869573 16869741 -165545501 + LTR8 LTR ERV1 502 691 0 2322 115 0 3 chr6 16869814 16870126 -165545116 + AluSx SINE Alu 1 311 -1 621 130 0 0 chr6 16870166 16870258 -165544984 + MER53 DNA DNA 23 114 -75 1226 197 87 79 chr6 16870310 16870436 -165544806 - MER39 LTR ERV1 0 707 583 1776 166 0 42 chr6 16870436 16870749 -165544493 + AluJo SINE Alu 1 300 -12 1226 197 87 79 chr6 16870749 16871003 -165544239 - MER39 LTR ERV1 -124 583 324 272 266 73 37 chr6 16870999 16871108 -165544134 - LTR48B LTR ERV1 -531 113 1 * 29 0 0 0 chr6 16871488 16871517 -165543725 + AT_rich Low_complexity Low_complexity 1 29 0 2345 108 3 16 chr6 16871517 16871833 -165543409 + AluSx SINE Alu 1 312 0 295 247 62 0 chr6 16871886 16871983 -165543259 + MIR SINE MIR 105 207 -55 898 251 114 80 chr6 16872824 16873536 -165541706 + L1ME4a LINE L1 5385 6120 -1 1866 176 59 42 chr6 16874120 16874545 -165540697 - MSTB1 LTR MaLR 0 432 1 510 149 0 43 chr6 16874928 16875022 -165540220 + FLAM_C SINE Alu 49 138 -5 2316 105 3 0 chr6 16875810 16876115 -165539127 - AluY SINE Alu -5 306 1 1703 179 43 0 chr6 16876284 16876564 -165538678 + AluJb SINE Alu 1 292 -20 1710 224 187 25 chr6 16876817 16877501 -165537741 + LTR50 LTR ERVL 1 795 0 1037 190 0 15 chr6 16877788 16877983 -165537259 - AluJo SINE Alu -8 304 113 2012 204 42 44 chr6 16877983 16878511 -165536731 - L1M4 LINE L1 -1057 5089 4563 1977 182 34 20 chr6 16878513 16878958 -165536284 - Charlie1a DNA MER1_type -529 926 476 1291 200 141 40 chr6 16878958 16879031 -165536211 + L1M4 LINE L1 2176 2240 -3906 1237 134 27 5 chr6 16879031 16879217 -165536025 + L1PA15 LINE L1 5976 6165 0 1291 200 141 40 chr6 16879217 16879518 -165535724 + L1M4 LINE L1 2240 2588 -3558 401 156 62 94 chr6 16879520 16879616 -165535626 - Charlie1a DNA MER1_type -962 493 401 14078 122 85 16 chr6 16879617 16880281 -165534961 + Tigger2 DNA MER2_type 2 619 -2099 2269 118 0 3 chr6 16880281 16880594 -165534648 + AluSx SINE Alu 1 312 0 14078 122 85 16 chr6 16880594 16882235 -165533007 + Tigger2 DNA MER2_type 619 2466 -252 998 97 7 13 chr6 16882232 16882386 -165532856 - Tigger2 DNA MER2_type -74 2644 2492 * 853 148 0 0 chr6 16882386 16882514 -165532728 + FLAM_C SINE Alu 11 138 -5 1957 206 9 45 chr6 16882571 16882993 -165532249 - Charlie1a DNA MER1_type -1048 407 1 594 110 49 0 chr6 16882998 16883080 -165532162 + AluSx SINE Alu 2 87 -226 741 147 0 0 chr6 16883087 16883203 -165532039 + Tigger2 DNA MER2_type 1780 1895 -823 1349 144 5 5 chr6 16883211 16883419 -165531823 + AluSx SINE Alu 86 293 -17 205 307 148 37 chr6 16883619 16883863 -165531379 - L2 LINE L2 -449 2865 2595 2065 153 30 12 chr6 16884299 16884632 -165530610 + MER7A DNA MER2_type 1 337 -9 2138 115 0 3 chr6 16884696 16884991 -165530251 - AluSq SINE Alu -19 294 1 1081 284 95 22 chr6 16884992 16885351 -165529891 + L2 LINE L2 2593 2977 -337 332 234 0 0 chr6 16885463 16885527 -165529715 + L2 LINE L2 3250 3313 0 211 176 0 0 chr6 16885656 16885690 -165529552 + C-rich Low_complexity Low_complexity 4 37 0 662 124 0 9 chr6 16885694 16885807 -165529435 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 2987 150 21 24 chr6 16885896 16886364 -165528878 + MLT1C LTR MaLR 1 467 0 2150 121 0 7 chr6 16886441 16886739 -165528503 - AluSx SINE Alu -16 296 1 185 308 13 83 chr6 16886903 16886969 -165528273 - L2 LINE L2 -210 3062 2993 2062 141 3 6 chr6 16886969 16887282 -165527960 - AluJo SINE Alu 0 312 1 185 308 13 83 chr6 16887282 16887371 -165527871 - L2 LINE L2 -279 2993 2918 946 251 207 16 chr6 16887691 16888077 -165527165 + LTR16B LTR ERVL 1 460 -4 1429 199 26 85 chr6 16889071 16889459 -165525783 + MLT1A1 LTR MaLR 1 365 0 357 268 188 35 chr6 16889478 16889947 -165525295 - L2 LINE L2 -1 3312 2742 191 271 43 86 chr6 16890099 16890169 -165525073 + L2 LINE L2 3242 3308 -5 276 236 56 0 chr6 16890524 16890596 -165524646 + LTR67 LTR ERVL 2 77 -480 551 284 7 0 chr6 16890854 16891009 -165524233 + LTR67 LTR ERVL 402 557 0 407 325 31 6 chr6 16892166 16892329 -165522913 + ERVL LTR ERVL 2738 2904 -2860 207 0 0 0 chr6 16892330 16892353 -165522889 + (TG)n Simple_repeat Simple_repeat 2 24 0 264 262 141 20 chr6 16892531 16892680 -165522562 + MLT1J LTR MaLR 1 167 -344 302 187 187 126 chr6 16892740 16892938 -165522304 + MLT1J LTR MaLR 277 486 -25 682 290 36 9 chr6 16892955 16893176 -165522066 + ERVL LTR ERVL 3027 3253 -2401 1016 279 113 22 chr6 16893235 16893826 -165521416 - L1M4 LINE L1 -1314 4832 4188 1231 121 6 0 chr6 16893851 16894024 -165521218 + AluSg/x SINE Alu 131 304 -8 290 275 30 53 chr6 16894051 16894182 -165521060 - L1M4 LINE L1 -1992 4154 4027 192 77 0 0 chr6 16894211 16894237 -165521005 + (TG)n Simple_repeat Simple_repeat 2 27 0 622 293 135 40 chr6 16894243 16894624 -165520618 - L1MC/D LINE L1 -683 5468 5125 2346 97 3 0 chr6 16894624 16894923 -165520319 - AluSp SINE Alu -13 300 1 622 293 135 40 chr6 16894923 16896121 -165519121 - L1MC/D LINE L1 -1026 5125 3875 24 0 0 0 chr6 16896192 16896216 -165519026 + AT_rich Low_complexity Low_complexity 1 24 0 407 316 76 46 chr6 16896333 16896874 -165518368 - L1MC/D LINE L1 -2421 3725 3169 711 153 18 92 chr6 16897221 16897384 -165517858 - MER106B DNA MER1_type -908 151 1 2704 104 30 3 chr6 16898190 16898555 -165516687 - THE1C LTR MaLR 0 375 1 1042 275 121 38 chr6 16898644 16899091 -165516151 + LTR33A LTR ERVL 2 485 -38 281 262 12 12 chr6 16899373 16899457 -165515785 + L2 LINE L2 3188 3271 -1 1780 191 110 45 chr6 16899514 16899583 -165515659 + Charlie4a DNA MER1_type 6 69 -1892 2302 79 13 23 chr6 16899583 16899887 -165515355 - AluY SINE Alu -10 301 1 2278 102 7 0 chr6 16899887 16900181 -165515061 - AluSx SINE Alu -16 296 1 1780 191 110 45 chr6 16900181 16900582 -165514660 + Charlie4a DNA MER1_type 68 508 0 315 275 194 25 chr6 16900609 16900769 -165514473 + MIR SINE MIR 49 235 -27 252 0 0 0 chr6 16901101 16901129 -165514113 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6951 63 40 25 chr6 16901129 16902911 -165512331 - SVA Other Other -518 1367 6 395 169 62 0 chr6 16903313 16903378 -165511864 + Tigger2 DNA MER2_type 1 69 -2649 * 2800 122 28 19 chr6 16903376 16903809 -165511433 + Tigger2 DNA MER2_type 2280 2716 -2 308 307 30 60 chr6 16903825 16903991 -165511251 - MIR SINE MIR -49 213 53 333 0 0 0 chr6 16904486 16904523 -165510719 + (GA)n Simple_repeat Simple_repeat 2 38 0 335 289 109 8 chr6 16904582 16904710 -165510532 - MIR3 SINE MIR -4 204 64 205 290 130 46 chr6 16904946 16905077 -165510165 - MIR3 SINE MIR -64 144 3 274 344 74 0 chr6 16905814 16905936 -165509306 + MIR SINE MIR 84 214 -48 788 241 176 0 chr6 16906171 16906432 -165508810 - LTR16A LTR ERVL -40 410 104 1943 122 0 82 chr6 16908131 16908460 -165506782 + AluSg SINE Alu 1 302 -8 324 0 0 0 chr6 16909097 16909133 -165506109 + (CA)n Simple_repeat Simple_repeat 2 37 0 431 301 23 27 chr6 16909998 16910217 -165505025 + Charlie8 DNA MER1_type 10 227 -2190 1810 146 43 10 chr6 16910705 16911007 -165504235 - AluSx SINE Alu 0 312 1 599 303 120 8 chr6 16911207 16911441 -165503801 + MIR SINE MIR 3 262 0 198 304 196 27 chr6 16911496 16911644 -165503598 - MIR SINE MIR -79 183 11 223 227 0 0 chr6 16912452 16912496 -165502746 + C-rich Low_complexity Low_complexity 1 44 0 658 194 20 80 chr6 16912775 16912976 -165502266 - MER53 DNA DNA 0 189 1 27 29 0 0 chr6 16913253 16913287 -165501955 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr6 16913328 16913349 -165501893 + AT_rich Low_complexity Low_complexity 1 21 0 1824 206 40 53 chr6 16913518 16913562 -165501680 + MER31B LTR ERV1 1 44 -422 4125 36 0 0 chr6 16913562 16914028 -165501214 - L1PA4 LINE L1 -3 6152 5687 1824 206 40 53 chr6 16914028 16914455 -165500787 + MER31B LTR ERV1 44 466 0 582 220 53 8 chr6 16914524 16914656 -165500586 + MER31B-int LTR ERV1 35 172 -4764 2211 119 0 0 chr6 16914707 16915009 -165500233 + AluSx SINE Alu 1 302 -10 511 128 73 37 chr6 16915055 16915164 -165500078 + MER31B-int LTR ERV1 169 281 -4655 * 3073 214 45 41 chr6 16915139 16915895 -165499347 + MER31B-int LTR ERV1 197 955 -3981 1904 139 9 6 chr6 16915904 16916228 -165499014 + MER31B-int LTR ERV1 1129 1453 -3483 1702 201 75 34 chr6 16916239 16916548 -165498694 + MER31B-int LTR ERV1 1632 1974 -2962 1843 164 0 7 chr6 16916548 16916840 -165498402 + AluJb SINE Alu 4 293 -19 1702 201 75 34 chr6 16916840 16917066 -165498176 + MER31B-int LTR ERV1 1974 2189 -2747 1617 168 53 83 chr6 16917064 16917203 -165498039 + MER31B-int LTR ERV1 3670 3812 -2484 * 852 181 0 0 chr6 16917203 16917330 -165497912 + FLAM_C SINE Alu 1 127 -6 1617 168 53 83 chr6 16917330 16917605 -165497637 + MER31B-int LTR ERV1 3812 5390 -906 2421 109 18 0 chr6 16917620 16917949 -165497293 - THE1B LTR MaLR -29 335 1 2598 196 84 92 chr6 16917949 16918785 -165496457 + MER31B-int LTR ERV1 4083 4911 -25 1879 184 70 48 chr6 16918790 16919246 -165495996 + MER31B LTR ERV1 1 466 0 1174 310 73 17 chr6 16919343 16919975 -165495267 - L1ME4a LINE L1 -175 5946 5280 49 76 0 0 chr6 16919977 16920082 -165495160 + AT_rich Low_complexity Low_complexity 1 105 0 23 0 0 0 chr6 16920324 16920347 -165494895 + AT_rich Low_complexity Low_complexity 1 23 0 2101 142 41 16 chr6 16920395 16920761 -165494481 + THE1C LTR MaLR 1 375 0 465 204 58 67 chr6 16920775 16920929 -165494313 - MER5B DNA MER1_type -13 176 17 516 210 166 25 chr6 16921354 16921511 -165493731 - MER5A DNA MER1_type -7 182 4 7509 191 58 100 chr6 16921613 16922137 -165493105 + L1MC4a LINE L1 5581 6125 -1809 2080 112 43 23 chr6 16922137 16922442 -165492800 + AluSx SINE Alu 1 311 -1 7509 191 58 100 chr6 16922442 16922787 -165492455 + L1MC4a LINE L1 6125 6483 -1451 528 236 9 0 chr6 16922787 16922893 -165492349 - MER81 DNA DNA -7 107 1 7509 191 58 100 chr6 16922893 16923350 -165491892 + L1MC4a LINE L1 6483 6957 -977 1844 186 0 0 chr6 16923350 16923651 -165491591 + AluJo SINE Alu 5 305 -7 7509 191 58 100 chr6 16923651 16924383 -165490859 + L1MC4a LINE L1 6957 7761 -173 1682 186 14 10 chr6 16924383 16924679 -165490563 + AluJo SINE Alu 1 297 -15 7509 191 58 100 chr6 16924679 16924846 -165490396 + L1MC4a LINE L1 7761 7933 -1 229 288 88 16 chr6 16925539 16925664 -165489578 + MIR SINE MIR 119 252 -10 305 292 0 0 chr6 16926223 16926319 -165488923 - MIR SINE MIR -1 261 166 331 291 156 0 chr6 16926346 16926487 -165488755 - MIR SINE MIR -21 241 79 219 69 0 0 chr6 16926743 16926772 -165488470 + (TG)n Simple_repeat Simple_repeat 1 29 0 650 198 26 37 chr6 16926818 16927053 -165488189 + MER31-int LTR ERV1 4430 4609 -327 582 256 213 0 chr6 16927053 16927264 -165487978 + MLT1L LTR MaLR 352 607 -8 1148 261 67 17 chr6 16927451 16927811 -165487431 - MLT1I LTR MaLR -29 380 3 690 242 31 0 chr6 16927941 16928102 -165487140 - L1ME3A LINE L1 -13 6157 5992 2123 138 0 3 chr6 16928776 16929087 -165486155 + AluJb SINE Alu 1 310 -2 922 208 110 20 chr6 16929570 16930123 -165485119 - MLT2F LTR ERVL 0 663 3 696 214 112 29 chr6 16930230 16930436 -165484806 - LTR16B LTR ERVL 0 464 242 2836 13 0 0 chr6 16931961 16932267 -165482975 - AluYb8 SINE Alu -12 306 1 1692 126 0 8 chr6 16932500 16932739 -165482503 + AluSq SINE Alu 1 237 -76 370 178 0 27 chr6 16933230 16933303 -165481939 + MLT1C LTR MaLR 95 165 -340 5725 133 60 33 chr6 16933339 16934874 -165480368 - pTR5 LTR ERV1 0 2438 744 842 208 64 101 chr6 16934874 16935172 -165480070 + MLT1C LTR MaLR 181 467 0 2141 125 0 25 chr6 16935210 16935530 -165479712 - AluSx SINE Alu 0 312 1 532 215 137 17 chr6 16935674 16935897 -165479345 - MIR SINE MIR 0 262 15 2394 93 3 0 chr6 16936045 16936357 -165478885 - AluSq SINE Alu 0 313 1 1558 176 55 0 chr6 16937199 16937360 -165477882 - AluJb SINE Alu -15 297 113 180 0 0 0 chr6 16937360 16937380 -165477862 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1558 176 55 0 chr6 16937380 16937490 -165477752 - AluJb SINE Alu -199 113 11 242 234 110 128 chr6 16937506 16937713 -165477529 - HAL1b LINE L1 -613 735 533 787 207 32 27 chr6 16937713 16937901 -165477341 - MER53 DNA DNA 0 189 1 242 234 110 128 chr6 16937901 16937966 -165477276 - HAL1b LINE L1 -815 533 468 6094 27 0 0 chr6 16937986 16938686 -165476556 - L1PA4 LINE L1 0 6155 5456 412 244 11 13 chr6 16941910 16942055 -165473187 - MIR SINE MIR -63 145 13 1756 81 0 0 chr6 16942326 16942548 -165472694 + AluY SINE Alu 86 307 -4 2011 224 20 13 chr6 16942606 16943062 -165472180 + MLT1C LTR MaLR 9 467 0 1984 125 18 4 chr6 16943101 16943414 -165471828 - AluSx SINE Alu 0 317 1 454 256 170 39 chr6 16943561 16943925 -165471317 + L1ME4a LINE L1 5710 6121 0 200 269 45 30 chr6 16944157 16944224 -165471018 - MIR SINE MIR -70 192 125 198 186 23 0 chr6 16945264 16945307 -165469935 - L2 LINE L2 -5 3308 3265 208 277 139 51 chr6 16945339 16945476 -165469766 - L2 LINE L2 -1 3271 3123 392 365 40 5 chr6 16945513 16945735 -165469507 + MIR SINE MIR 27 256 -6 575 350 65 21 chr6 16947455 16948178 -165467064 - L2 LINE L2 -457 2857 2103 1302 181 14 14 chr6 16948551 16948916 -165466326 + Tigger1 DNA MER2_type 1 2418 0 2250 234 131 35 chr6 16948924 16948945 -165466297 + L2 LINE L2 2224 2242 -1071 390 212 130 14 chr6 16948945 16949091 -165466151 - MER103 DNA DNA -1 165 3 2250 234 131 35 chr6 16949091 16950069 -165465173 + L2 LINE L2 2242 3312 -1 2075 131 3 10 chr6 16950160 16950474 -165464768 - AluSx SINE Alu 0 312 1 435 244 67 30 chr6 16950958 16951093 -165464149 + L2 LINE L2 3161 3300 -13 718 139 0 0 chr6 16951588 16951696 -165463546 + AluSg/x SINE Alu 195 302 -10 1286 100 39 0 chr6 16952575 16952755 -165462487 - MER39B LTR ERV1 -26 627 441 632 164 36 9 chr6 16952755 16952865 -165462377 + AluJo SINE Alu 79 191 -121 745 259 109 51 chr6 16952881 16953175 -165462067 - MLT1D LTR MaLR -189 316 6 834 153 0 88 chr6 16953444 16953614 -165461628 + FRAM SINE Alu 1 155 -21 200 321 57 38 chr6 16953620 16953779 -165461463 - MIR SINE MIR -70 192 31 2362 82 0 0 chr6 16954555 16954888 -165460354 + AluY SINE Alu 1 311 0 559 128 128 8 chr6 16955993 16956126 -165459116 - MIR SINE MIR -65 197 49 478 283 60 12 chr6 16956251 16956417 -165458825 + MIR SINE MIR 2 175 -87 2368 106 25 124 chr6 16957689 16957895 -165457347 - Tigger2a DNA MER2_type -2274 434 209 971 34 8 0 chr6 16957895 16958013 -165457229 - L1PA3 LINE L1 0 6155 6037 2368 106 25 124 chr6 16958013 16958068 -165457174 - Tigger2a DNA MER2_type -2499 209 150 1752 156 44 0 chr6 16958068 16958343 -165456899 + AluJo SINE Alu 1 287 -25 2368 106 25 124 chr6 16958343 16958562 -165456680 - Tigger2a DNA MER2_type -2558 150 1 200 182 0 23 chr6 16958744 16958788 -165456454 + MIR3 SINE MIR 112 154 -54 212 333 130 0 chr6 16959049 16959157 -165456085 - MIR SINE MIR -78 184 63 1851 65 0 16 chr6 16959527 16959772 -165455470 - L1PA6 LINE L1 0 6154 5914 916 78 0 0 chr6 16960353 16960469 -165454773 + MSTA LTR MaLR 1 116 -312 2741 131 16 14 chr6 16960970 16961397 -165453845 + MSTA LTR MaLR 1 428 0 2667 147 24 47 chr6 16962712 16963249 -165451993 + L1MA7 LINE L1 5726 6250 -41 188 278 44 33 chr6 16963630 16963720 -165451522 + MIR SINE MIR 61 151 -111 2701 94 8 6 chr6 16964096 16964459 -165450783 + THE1B LTR MaLR 1 364 0 405 296 15 8 chr6 16964740 16964872 -165450370 + MIR3 SINE MIR 65 197 -11 422 280 47 57 chr6 16965012 16965205 -165450037 + MIR SINE MIR 7 197 -65 590 196 33 98 chr6 16965295 16965479 -165449763 + MER5B DNA MER1_type 4 175 -3 4819 70 27 21 chr6 16966569 16967225 -165448017 - PABL_A LTR ERV1 0 660 1 607 179 0 9 chr6 16967225 16967320 -165447922 + MLT2F LTR ERVL 10 105 -558 1611 239 75 47 chr6 16967363 16967630 -165447612 + MLT2F LTR ERVL 181 468 -195 1523 183 67 14 chr6 16967630 16967975 -165447267 - MLT1A1 LTR MaLR 0 365 3 1611 239 75 47 chr6 16967975 16968172 -165447070 + MLT2F LTR ERVL 468 658 -5 2030 173 18 25 chr6 16968381 16968774 -165446468 - MLT1B LTR MaLR 0 390 1 308 108 4 13 chr6 16970120 16970171 -165445071 + MLT2D LTR ERVL 367 406 -8 1024 158 22 0 chr6 16970214 16970397 -165444845 - MER53 DNA DNA -2 187 1 311 272 23 69 chr6 16970407 16970580 -165444662 - MLT1J LTR MaLR -330 181 17 531 268 89 67 chr6 16970660 16970884 -165444358 - MIR SINE MIR -16 246 18 271 277 50 10 chr6 16970895 16970996 -165444246 - L2 LINE L2 -11 3302 3198 1083 186 3 111 chr6 16971021 16971083 -165444159 + MLT1B LTR MaLR 118 185 -205 2099 95 20 26 chr6 16971083 16971388 -165443854 + AluSc SINE Alu 1 303 -6 1083 186 3 111 chr6 16971388 16971631 -165443611 + MLT1B LTR MaLR 185 390 0 624 252 155 20 chr6 16971759 16972253 -165442989 - L2 LINE L2 -274 3039 2401 577 281 218 18 chr6 16972703 16973038 -165442204 - L2 LINE L2 -965 2349 1948 1519 240 52 103 chr6 16973074 16973225 -165442017 + MER21B LTR ERV1 11 168 -695 1480 162 9 104 chr6 16973225 16973553 -165441689 + AluSp SINE Alu 1 297 -16 1519 240 52 103 chr6 16973553 16974185 -165441057 + MER21B LTR ERV1 168 754 -109 471 238 28 0 chr6 16974186 16974329 -165440913 - L2 LINE L2 -1429 1885 1739 1186 200 80 85 chr6 16974437 16974802 -165440440 + MLT1A1 LTR MaLR 1 363 -2 2088 142 3 0 chr6 16975147 16975442 -165439800 - AluSx SINE Alu -16 296 1 235 296 0 0 chr6 16975469 16975523 -165439719 + L2 LINE L2 3214 3267 -5 576 226 82 0 chr6 16975777 16975936 -165439306 - MIR SINE MIR -3 259 88 620 269 11 6 chr6 16975988 16976163 -165439079 + MER5B DNA MER1_type 1 176 -2 2510 201 72 34 chr6 16977244 16977830 -165437412 - MLT1E3 LTR MaLR 0 624 13 1559 91 5 0 chr6 16977830 16978029 -165437213 + AluSq SINE Alu 106 305 -8 199 277 253 0 chr6 16978730 16978813 -165436429 - L2 LINE L2 -29 3243 3140 272 330 62 23 chr6 16979112 16979279 -165435963 - MIR3 SINE MIR -11 197 24 709 161 31 31 chr6 16979279 16979405 -165435837 - MER5A DNA MER1_type 0 189 61 1761 163 13 13 chr6 16979405 16979712 -165435530 - AluJo SINE Alu -5 307 1 709 161 31 31 chr6 16979712 16979747 -165435495 - MER5A DNA MER1_type -127 62 28 511 255 196 12 chr6 16980838 16981093 -165434149 + L2 LINE L2 2274 2575 -739 19767 27 0 0 chr6 16981140 16984095 -165431147 - L1PA4 LINE L1 -8 6147 3193 1286 148 29 29 chr6 16984121 16984364 -165430878 + THE1C LTR MaLR 133 375 0 497 308 174 10 chr6 16984412 16984607 -165430635 - MIR SINE MIR -7 255 29 200 130 22 0 chr6 16984703 16984749 -165430493 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1115 268 214 21 chr6 16985202 16985867 -165429375 - LTR50 LTR ERVL 0 795 3 685 257 43 10 chr6 16986088 16986298 -165428944 - MIR SINE MIR -3 259 38 544 318 25 20 chr6 16986371 16986616 -165428626 + MIR SINE MIR 14 259 -3 2012 205 80 17 chr6 16986989 16987310 -165427932 + MLT1D LTR MaLR 2 377 -128 689 216 24 0 chr6 16987310 16987435 -165427807 - FLAM_A SINE Alu -4 129 2 2012 205 80 17 chr6 16987435 16987573 -165427669 + MLT1D LTR MaLR 377 505 0 1659 51 0 10 chr6 16988735 16988932 -165426310 + AluY SINE Alu 99 293 -18 581 88 0 12 chr6 16988995 16989075 -165426167 + MADE1 DNA Mariner 1 79 -1 248 224 0 35 chr6 16989075 16989133 -165426109 + MER63 DNA MER1_type 687 742 -94 * 358 256 47 0 chr6 16989119 16989205 -165426037 + MER63 DNA MER1_type 970 1059 -2 24 0 0 0 chr6 16989220 16989244 -165425998 + AT_rich Low_complexity Low_complexity 1 24 0 1321 123 100 9 chr6 16989275 16989495 -165425747 - MSTA LTR MaLR 0 428 189 2207 114 3 7 chr6 16989495 16989802 -165425440 - AluSg1 SINE Alu -3 306 1 2072 133 10 0 chr6 16989802 16990102 -165425140 - AluSx SINE Alu -9 303 1 4609 158 15 13 chr6 16990102 16991345 -165423897 - L1M1 LINE L1 -562 5738 4493 2151 100 4 0 chr6 16991617 16991917 -165423325 + AluSx SINE Alu 1 301 0 323 23 23 0 chr6 16991918 16991962 -165423280 + (CA)n Simple_repeat Simple_repeat 2 46 0 470 325 65 22 chr6 16991987 16992206 -165423036 - MIR SINE MIR -27 235 1 218 254 0 16 chr6 16992232 16992295 -165422947 + G-rich Low_complexity Low_complexity 2 63 0 720 248 130 4 chr6 16994666 16994928 -165420314 - L1ME4a LINE L1 -238 5883 5589 2239 136 76 35 chr6 16995047 16995203 -165420039 - MER83 LTR ERV1 -25 423 275 2412 74 23 0 chr6 16995203 16995502 -165419740 - AluY SINE Alu -5 306 1 2239 136 76 35 chr6 16995502 16995751 -165419491 - MER83 LTR ERV1 -173 275 1 1888 144 0 42 chr6 16995776 16996089 -165419153 - AluSx SINE Alu -12 300 1 345 149 0 0 chr6 16996123 16996190 -165419052 + (GA)n Simple_repeat Simple_repeat 2 68 0 290 323 118 35 chr6 16996872 16997126 -165418116 - L1ME4a LINE L1 -529 5592 5318 875 266 86 44 chr6 16997241 16997625 -165417617 - MLT1L LTR MaLR -74 541 142 971 192 0 0 chr6 16997762 16997929 -165417313 + AluJb SINE Alu 136 302 -10 1045 226 146 14 chr6 16998250 16998538 -165416704 - MLT1D LTR MaLR 0 505 180 972 169 0 13 chr6 16998545 16998699 -165416543 - FRAM SINE Alu -24 152 1 617 209 29 91 chr6 16998700 16998910 -165416332 - MLT1D LTR MaLR -308 197 1 2102 119 0 29 chr6 16999802 17000113 -165415129 + AluSx SINE Alu 1 302 -10 1652 189 48 46 chr6 17000420 17000791 -165414451 - MLT1A2 LTR MaLR -2 372 1 2100 206 43 57 chr6 17001601 17002112 -165413130 + MLT1D LTR MaLR 1 504 -1 28 0 0 0 chr6 17002932 17002960 -165412282 + AT_rich Low_complexity Low_complexity 1 28 0 2166 117 7 0 chr6 17002960 17003251 -165411991 - AluSx SINE Alu -19 293 1 494 179 89 9 chr6 17003364 17003476 -165411766 - L2 LINE L2 -11 3302 3182 243 296 42 0 chr6 17004156 17004227 -165411015 - L3 LINE CR1 -254 1323 1250 276 260 10 31 chr6 17004476 17004572 -165410670 - L3 LINE CR1 -341 1236 1143 2502 170 10 0 chr6 17004757 17005156 -165410086 - MER57A LTR ERV1 0 403 1 346 227 43 71 chr6 17005395 17005536 -165409706 + MIR3 SINE MIR 60 196 -12 2512 56 3 40 chr6 17007600 17007921 -165407321 + AluY SINE Alu 1 309 -2 2481 87 3 0 chr6 17007979 17008288 -165406954 + AluSg SINE Alu 1 310 0 588 252 176 22 chr6 17008640 17008862 -165406380 - MIR SINE MIR 0 262 7 349 331 56 28 chr6 17008991 17009133 -165406109 - MIR3 SINE MIR -25 183 37 1331 263 94 35 chr6 17009504 17010067 -165405175 - MLT1L LTR MaLR 0 615 20 1607 183 48 0 chr6 17010193 17010488 -165404754 + AluJb SINE Alu 1 309 -3 420 295 137 13 chr6 17010515 17010749 -165404493 + L1ME LINE L1 5478 5740 -381 1994 140 34 0 chr6 17010992 17011284 -165403958 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr6 17011326 17011347 -165403895 + AT_rich Low_complexity Low_complexity 1 21 0 239 317 183 0 chr6 17012857 17012939 -165402303 + L2 LINE L2 3143 3239 -33 393 22 0 0 chr6 17012944 17012990 -165402252 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 981 236 56 36 chr6 17013571 17013992 -165401250 - MER20B DNA MER1_type -1 782 297 1913 105 4 14 chr6 17013992 17014268 -165400974 + AluSg SINE Alu 30 302 -8 981 236 56 36 chr6 17014268 17014334 -165400908 - MER20B DNA MER1_type -486 297 234 299 167 15 0 chr6 17014344 17014410 -165400832 - L1MC4 LINE L1 0 8042 7976 505 239 147 51 chr6 17014440 17014754 -165400488 - L1MC4 LINE L1 -139 7903 7560 1094 254 82 9 chr6 17015052 17015371 -165399871 - L1MC4a LINE L1 -1942 5866 5525 393 232 50 118 chr6 17015378 17015598 -165399644 - MER20B DNA MER1_type -543 240 36 226 237 158 26 chr6 17016170 17016246 -165398996 + MIR SINE MIR 143 228 -34 2082 126 0 7 chr6 17016410 17016711 -165398531 - AluSx SINE Alu 0 312 14 399 91 0 0 chr6 17016866 17016921 -165398321 - MLT2B1 LTR ERVL 0 520 466 3518 203 38 65 chr6 17016983 17017859 -165397383 - MER21B LTR ERV1 -11 852 1 1773 224 48 60 chr6 17017859 17018338 -165396904 - MLT2B1 LTR ERVL -47 473 1 336 209 58 35 chr6 17019127 17019213 -165396029 - MIR SINE MIR -87 121 34 344 250 162 35 chr6 17020743 17020971 -165394271 - L1ME4a LINE L1 -169 5952 5696 1763 169 37 3 chr6 17022351 17022526 -165392716 - AluJo SINE Alu -7 305 114 282 29 0 0 chr6 17022526 17022561 -165392681 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1763 169 37 3 chr6 17022561 17022680 -165392562 - AluJo SINE Alu -198 114 1 971 208 0 12 chr6 17022705 17022873 -165392369 - FAM SINE Alu -9 166 1 313 150 0 33 chr6 17022983 17023044 -165392198 + FRAM/FAM SINE Alu 16 68 -98 714 148 0 26 chr6 17023045 17023160 -165392082 - FAM SINE Alu -18 167 56 2179 107 3 13 chr6 17023180 17023479 -165391763 + AluSg SINE Alu 1 296 -14 268 321 52 11 chr6 17023488 17023609 -165391633 - MIR SINE MIR -63 145 38 685 297 73 69 chr6 17023709 17024151 -165391091 + L2 LINE L2 2467 2919 -394 573 113 0 0 chr6 17024151 17024231 -165391011 - MADE1 DNA Mariner 0 80 1 685 297 73 69 chr6 17024231 17024360 -165390882 + L2 LINE L2 2919 3046 -267 657 274 167 0 chr6 17024474 17024678 -165390564 - MIR SINE MIR -5 257 20 485 262 0 0 chr6 17024678 17024781 -165390461 + L2 LINE L2 3211 3313 0 2022 147 0 13 chr6 17025396 17025703 -165389539 + AluSx SINE Alu 1 303 -9 588 264 61 20 chr6 17026055 17026252 -165388990 + MIR SINE MIR 23 227 -35 229 138 17 17 chr6 17026276 17026334 -165388908 + (TTA)n Simple_repeat Simple_repeat 2 59 0 228 35 0 0 chr6 17027653 17027682 -165387560 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 575 194 97 0 chr6 17027757 17027860 -165387382 - MER81 DNA DNA 0 114 2 574 133 18 0 chr6 17028901 17029014 -165386228 + CT-rich Low_complexity Low_complexity 1 115 0 2003 114 26 0 chr6 17029015 17029466 -165385776 - AluSx SINE Alu 0 462 5 1196 154 27 23 chr6 17029526 17029747 -165385495 - AluJo SINE Alu -3 309 88 651 140 0 0 chr6 17029797 17029890 -165385352 - AluJo SINE Alu -218 94 2 728 233 41 65 chr6 17029972 17030198 -165385044 + MLT1J2 LTR MaLR 265 450 0 1089 268 144 28 chr6 17031323 17032121 -165383121 + L1ME4a LINE L1 5258 6120 -1 1339 150 14 5 chr6 17032181 17032388 -165382854 - AluJb SINE Alu -103 209 1 910 265 126 6 chr6 17032407 17032724 -165382518 + L1ME3 LINE L1 5530 5884 -278 2271 117 3 0 chr6 17032754 17033053 -165382189 - AluSp SINE Alu -13 300 1 1056 149 0 6 chr6 17033354 17033515 -165381727 - AluJb SINE Alu -8 304 145 375 177 371 8 chr6 17033875 17033999 -165381243 + L3 LINE CR1 1389 1557 -20 246 185 111 0 chr6 17035113 17035167 -165380075 + MIR SINE MIR 157 216 -46 202 321 0 29 chr6 17035300 17035440 -165379802 + A-rich Low_complexity Low_complexity 3 138 0 468 267 92 33 chr6 17037264 17037504 -165377738 - LTR41 LTR ERVL -10 763 510 750 212 56 11 chr6 17037781 17037989 -165377253 - LTR41 LTR ERVL -554 241 1 248 314 23 0 chr6 17039165 17039251 -165375991 + L1MC4 LINE L1 6615 6702 -1340 261 206 0 16 chr6 17039252 17039315 -165375927 + (TA)n Simple_repeat Simple_repeat 2 63 0 345 24 0 0 chr6 17039465 17039507 -165375735 + (TG)n Simple_repeat Simple_repeat 1 42 0 419 318 41 42 chr6 17039911 17040101 -165375141 - MIR3 SINE MIR -64 144 2 388 267 23 15 chr6 17040826 17040957 -165374285 - MIR SINE MIR -14 248 117 2365 78 7 0 chr6 17041696 17041992 -165373250 + AluSg SINE Alu 1 298 -12 965 95 22 0 chr6 17043394 17043531 -165371711 - L1PB2 LINE L1 -2 6149 6010 450 241 35 17 chr6 17043618 17043734 -165371508 + MIR SINE MIR 89 206 -56 270 307 119 0 chr6 17044503 17044604 -165370638 + L2 LINE L2 2923 3035 -237 1606 156 26 11 chr6 17044802 17045071 -165370171 - MER2 DNA MER2_type -1 344 72 670 151 19 0 chr6 17045083 17045189 -165370053 - MER2 DNA MER2_type -232 113 6 1884 164 0 3 chr6 17045645 17045938 -165369304 - AluJb SINE Alu -20 292 1 237 388 86 0 chr6 17046639 17046791 -165368451 - L3b LINE CR1 -115 1468 1304 322 154 0 90 chr6 17047053 17047131 -165368111 + L2 LINE L2 3182 3252 -61 958 233 34 25 chr6 17047504 17047740 -165367502 - MIR SINE MIR -1 261 24 281 346 83 55 chr6 17047899 17048116 -165367126 + L2 LINE L2 3046 3268 -4 1346 267 70 14 chr6 17048503 17048934 -165366308 + MLT1G1 LTR MaLR 73 527 -68 5254 156 15 20 chr6 17050277 17050899 -165364343 + L1PA16 LINE L1 5148 5773 -393 2264 107 0 0 chr6 17050899 17051188 -165364054 + AluSq SINE Alu 1 289 -24 5254 156 15 20 chr6 17051188 17051576 -165363666 + L1PA16 LINE L1 5773 6161 -5 427 283 256 25 chr6 17051811 17052175 -165363067 + MLT1J2 LTR MaLR 1 448 -2 3240 56 0 0 chr6 17052497 17052874 -165362368 + L1PA6 LINE L1 5778 6154 0 1957 157 3 0 chr6 17053939 17054244 -165360998 - AluJb SINE Alu -6 306 1 217 336 114 7 chr6 17054577 17054717 -165360525 + L2 LINE L2 3118 3272 0 225 0 0 0 chr6 17055521 17055546 -165359696 + (TG)n Simple_repeat Simple_repeat 2 26 0 1398 188 44 76 chr6 17056102 17056226 -165359016 + MLT1C LTR MaLR 38 164 -232 4203 120 16 2 chr6 17056226 17056835 -165358407 - L1PA13 LINE L1 0 6163 5546 1398 188 44 76 chr6 17056835 17057152 -165358090 + MLT1C LTR MaLR 164 391 -5 2018 148 0 0 chr6 17057496 17057786 -165357456 - AluJb SINE Alu -22 290 1 2368 80 3 0 chr6 17059124 17059413 -165355829 + AluSp SINE Alu 1 290 -23 256 182 0 0 chr6 17059432 17059487 -165355755 + L1MC4 LINE L1 6648 6702 -1340 183 71 71 0 chr6 17059490 17059532 -165355710 + (TA)n Simple_repeat Simple_repeat 1 45 0 1854 164 0 10 chr6 17059543 17059842 -165355400 + AluJo SINE Alu 3 298 -14 1878 151 9 38 chr6 17059896 17060215 -165355027 + AluSx SINE Alu 1 310 -2 1804 102 121 11 chr6 17060429 17060694 -165354548 - AluSx SINE Alu -18 294 1 479 314 124 19 chr6 17060751 17061009 -165354233 - L1MC/D LINE L1 -2092 5716 5432 267 330 129 36 chr6 17061010 17061319 -165353923 + L2 LINE L2 2636 2973 -341 278 358 43 12 chr6 17061598 17061760 -165353482 + L2 LINE L2 3102 3268 -4 208 150 0 25 chr6 17061940 17061980 -165353262 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 185 366 49 8 chr6 17062296 17062419 -165352823 - MIR SINE MIR -76 186 59 21 57 0 0 chr6 17062564 17062599 -165352643 + AT_rich Low_complexity Low_complexity 1 35 0 380 307 52 26 chr6 17062647 17062839 -165352403 - L2 LINE L2 -153 3160 2964 1770 141 17 37 chr6 17064303 17064601 -165350641 + AluJo SINE Alu 1 292 -20 214 181 111 56 chr6 17064638 17064710 -165350532 - MIR SINE MIR -73 189 114 430 177 38 0 chr6 17065248 17065327 -165349915 - MER103 DNA DNA -48 118 37 2132 135 3 0 chr6 17065449 17065760 -165349482 + AluSx SINE Alu 1 312 0 822 200 24 6 chr6 17065941 17066111 -165349131 + MER5B DNA MER1_type 1 173 -5 309 238 152 19 chr6 17066738 17066843 -165348399 - MIR SINE MIR -26 236 118 232 325 12 0 chr6 17066838 17066918 -165348324 + MIR SINE MIR 176 256 -6 * 364 113 32 0 chr6 17066928 17066990 -165348252 - MIR3 SINE MIR -8 200 137 2266 85 3 3 chr6 17067007 17067302 -165347940 + AluSp SINE Alu 1 295 -18 1876 167 6 10 chr6 17067644 17067956 -165347286 + AluJb SINE Alu 1 311 -1 850 274 25 61 chr6 17068106 17068383 -165346859 + LTR16A LTR ERVL 18 284 -166 190 239 0 0 chr6 17068430 17068476 -165346766 - L2 LINE L2 0 3313 3268 1033 224 51 9 chr6 17069528 17069742 -165345500 - MER58A DNA MER1_type 0 224 2 698 305 35 0 chr6 17069778 17069978 -165345264 - MER102b DNA MER1_type -51 290 84 180 0 0 0 chr6 17069978 17069998 -165345244 + (CCA)n Simple_repeat Simple_repeat 1 20 0 2353 93 3 0 chr6 17070097 17070397 -165344845 + AluSp SINE Alu 1 301 -12 2058 173 195 24 chr6 17070451 17070959 -165344283 + LTR49 LTR ERV1 1 595 0 855 211 99 30 chr6 17070961 17071193 -165344049 - MIR SINE MIR -10 252 5 4254 119 10 8 chr6 17071201 17071825 -165343417 - MER41B LTR ERV1 -8 627 3 518 223 0 0 chr6 17072739 17072833 -165342409 - MER81 DNA DNA -20 94 1 311 290 65 38 chr6 17072957 17073129 -165342113 - MER5A DNA MER1_type 0 189 2 4142 120 8 35 chr6 17073229 17073593 -165341649 + MER41B LTR ERV1 1 341 -294 829 174 0 8 chr6 17073593 17073725 -165341517 + FLAM_C SINE Alu 2 132 -1 4142 120 8 35 chr6 17073725 17074011 -165341231 + MER41B LTR ERV1 341 633 -2 517 279 34 0 chr6 17074454 17074601 -165340641 + MIR SINE MIR 110 261 -1 1860 160 7 0 chr6 17074730 17075017 -165340225 + AluJb SINE Alu 1 289 -23 1940 163 0 0 chr6 17075018 17075333 -165339909 + AluSx SINE Alu 1 315 0 1776 102 0 12 chr6 17076116 17076362 -165338880 - AluSg SINE Alu -8 302 60 3746 164 40 37 chr6 17076447 17077156 -165338086 - MER50 LTR ERV1 -23 711 1 1683 191 7 0 chr6 17077536 17077839 -165337403 + AluJo SINE Alu 1 305 -7 2124 111 3 0 chr6 17078047 17078335 -165336907 + AluSq SINE Alu 1 289 -24 227 253 301 0 chr6 17078455 17078538 -165336704 - MIR SINE MIR -70 192 85 2189 176 50 23 chr6 17078542 17078991 -165336251 + MLT1C LTR MaLR 7 549 0 2754 86 18 39 chr6 17079033 17079378 -165335864 - THE1C LTR MaLR 0 375 37 2159 133 0 0 chr6 17079378 17079679 -165335563 + AluSx SINE Alu 1 301 -11 2754 86 18 39 chr6 17079679 17079716 -165335526 - THE1C LTR MaLR -338 37 1 4151 125 35 65 chr6 17079803 17080515 -165334727 - LTR8 LTR ERV1 0 691 1 2836 123 23 44 chr6 17080668 17081320 -165333922 - LTR8A LTR ERV1 0 727 1 5114 87 11 53 chr6 17082405 17082590 -165332652 - LTR8 LTR ERV1 0 691 500 2186 105 3 0 chr6 17082590 17082885 -165332357 + AluSx SINE Alu 1 296 -16 5114 87 11 53 chr6 17082885 17083420 -165331822 - LTR8 LTR ERV1 -191 500 1 282 141 26 13 chr6 17084602 17084680 -165330562 + (TG)n Simple_repeat Simple_repeat 2 80 0 749 161 32 0 chr6 17084755 17084910 -165330332 + L1MA4A LINE L1 6132 6291 -12 257 372 37 12 chr6 17085282 17085446 -165329796 + MIR SINE MIR 29 196 -66 1714 167 127 27 chr6 17085551 17085847 -165329395 - LTR54B LTR ERV1 -1 497 139 216 0 0 0 chr6 17085847 17085871 -165329371 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1714 167 127 27 chr6 17085871 17086024 -165329218 - LTR54B LTR ERV1 -359 139 3 2231 117 3 0 chr6 17086315 17086622 -165328620 - AluSx SINE Alu -2 310 3 891 168 56 0 chr6 17086656 17086817 -165328425 + L1PB4 LINE L1 5947 6116 -40 22 0 0 0 chr6 17086817 17086839 -165328403 + AT_rich Low_complexity Low_complexity 1 22 0 1888 223 90 33 chr6 17087380 17087860 -165327382 - MLT1F LTR MaLR 0 542 36 486 271 169 0 chr6 17087901 17088067 -165327175 + MIR SINE MIR 53 246 -16 219 69 0 0 chr6 17088549 17088578 -165326664 + (TG)n Simple_repeat Simple_repeat 2 30 0 1928 171 3 3 chr6 17088639 17088949 -165326293 + AluSx SINE Alu 1 310 -2 640 212 39 11 chr6 17088957 17089136 -165326106 + L1MB2 LINE L1 5148 5331 -815 796 223 0 51 chr6 17089136 17089311 -165325931 + AluJb SINE Alu 137 302 -10 254 175 0 18 chr6 17089317 17089374 -165325868 + A-rich Low_complexity Low_complexity 3 58 0 4409 148 55 28 chr6 17089384 17089750 -165325492 + L1MB2 LINE L1 5296 5651 -520 2126 128 44 0 chr6 17089750 17090047 -165325195 + AluSq SINE Alu 1 310 -3 4409 148 55 28 chr6 17090047 17090531 -165324711 + L1MB2 LINE L1 5651 6169 -2 209 285 4 111 chr6 17091902 17092091 -165323151 - MIR SINE MIR -60 202 29 4944 144 55 5 chr6 17092139 17092924 -165322318 - LTR1B LTR ERV1 0 826 3 570 164 10 0 chr6 17093292 17093396 -165321846 + MER53 DNA DNA 1 105 -84 311 143 6 246 chr6 17094453 17094579 -165320663 - L2 LINE L2 0 3313 3239 2206 120 3 3 chr6 17094579 17094879 -165320363 + AluJb SINE Alu 1 300 -12 311 143 6 246 chr6 17094879 17094927 -165320315 - L2 LINE L2 -74 3239 3181 1910 152 6 19 chr6 17095036 17095352 -165319890 - AluSx SINE Alu 0 312 1 567 236 91 25 chr6 17095354 17095596 -165319646 - L2 LINE L2 -59 3254 2997 339 277 115 76 chr6 17095626 17095983 -165319259 + MLT1K LTR MaLR 204 574 -14 1341 202 0 0 chr6 17096888 17097111 -165318131 - MER58A DNA MER1_type 0 224 2 1480 155 139 89 chr6 17097391 17097829 -165317413 + MLT1C LTR MaLR 1 460 -7 249 224 212 0 chr6 17099531 17099616 -165315626 - MIR3 SINE MIR -13 195 93 394 305 19 62 chr6 17099639 17099718 -165315524 + MIR SINE MIR 29 110 -152 2495 90 0 0 chr6 17099718 17100029 -165315213 - AluSx SINE Alu -1 311 1 394 305 19 62 chr6 17100029 17100159 -165315083 + MIR SINE MIR 110 229 -33 744 253 95 12 chr6 17100509 17100750 -165314492 + MIR SINE MIR 2 262 0 4638 104 6 2 chr6 17100835 17101471 -165313771 + L1PA15 LINE L1 5521 6159 -6 450 223 41 16 chr6 17101681 17101802 -165313440 + MIR3 SINE MIR 31 154 -54 1745 232 90 114 chr6 17101850 17102468 -165312774 - L2 LINE L2 -48 3265 2634 699 199 8 15 chr6 17102468 17102599 -165312643 + FAM SINE Alu 41 170 -15 1745 232 90 114 chr6 17102599 17103162 -165312080 - L2 LINE L2 -679 2634 1993 1837 184 25 22 chr6 17104154 17104519 -165310723 + MLT1B LTR MaLR 21 386 -4 752 161 12 50 chr6 17105190 17105351 -165309891 - MLT2C1 LTR ERVL 0 397 243 1282 225 62 3 chr6 17105362 17105682 -165309560 - MER58B DNA MER1_type -1 340 2 358 288 119 29 chr6 17105742 17106020 -165309222 + L1ME4a LINE L1 5746 6048 -73 1206 209 15 67 chr6 17106174 17106449 -165308793 - MLT1G LTR MaLR 0 590 333 2337 179 38 20 chr6 17106449 17106901 -165308341 - MLT1C LTR MaLR -4 463 4 1206 209 15 67 chr6 17106901 17106955 -165308287 - MLT1G LTR MaLR -257 333 278 7530 101 7 20 chr6 17106972 17108044 -165307198 - MER11C LTR ERVK -14 1057 1 687 210 129 20 chr6 17108053 17108261 -165306981 - MLT1G LTR MaLR -328 267 9 818 124 23 0 chr6 17108271 17108400 -165306842 + FLAM_C SINE Alu 1 132 -1 691 157 0 67 chr6 17108559 17108693 -165306549 - AluJb SINE Alu -187 125 1 1697 132 92 4 chr6 17108693 17108974 -165306268 - L1MC1 LINE L1 -10 6323 6018 256 197 167 0 chr6 17109915 17109981 -165305261 + MIR3 SINE MIR 14 90 -118 203 267 50 3 chr6 17110060 17110163 -165305079 + MIR SINE MIR 35 142 -66 382 272 10 0 chr6 17111038 17111141 -165304101 - MIR SINE MIR -21 241 138 682 244 160 91 chr6 17112334 17112454 -165302788 + MLT1D LTR MaLR 5 115 -352 1812 197 21 13 chr6 17112454 17112839 -165302403 - MLT1B LTR MaLR -2 388 1 682 244 160 91 chr6 17112839 17113147 -165302095 + MLT1D LTR MaLR 115 467 0 1867 174 30 22 chr6 17113456 17113818 -165301424 + MLT1A1 LTR MaLR 1 365 0 2197 66 216 3 chr6 17113998 17114318 -165300924 + THE1B-int LTR MaLR 1172 1559 -21 1685 129 101 21 chr6 17114325 17114611 -165300631 + THE1B LTR MaLR 1 309 -55 666 280 8 42 chr6 17114653 17114892 -165300350 + MIR SINE MIR 32 262 0 622 219 52 89 chr6 17115293 17115465 -165299777 - L2 LINE L2 0 3313 3153 2587 67 0 0 chr6 17115465 17115764 -165299478 + AluSc SINE Alu 1 299 -10 622 219 52 89 chr6 17115764 17115861 -165299381 - L2 LINE L2 -160 3153 3054 2343 160 80 34 chr6 17115862 17116337 -165298905 - MLT1D LTR MaLR -6 499 3 426 228 193 1 chr6 17116338 17116576 -165298666 - L2 LINE L2 -254 3059 2779 1555 142 130 128 chr6 17116725 17116766 -165298476 - MSTB LTR MaLR 0 426 387 2074 128 7 3 chr6 17116766 17117063 -165298179 + AluSx SINE Alu 1 298 -14 1555 142 130 128 chr6 17117063 17117106 -165298136 - MSTB LTR MaLR -39 387 346 4760 58 5 5 chr6 17117106 17117704 -165297538 + L1PA8 LINE L1 5570 6167 -5 1555 142 130 128 chr6 17117704 17118041 -165297201 - MSTB LTR MaLR -80 346 3 1645 169 34 0 chr6 17119381 17119647 -165295595 + AluJb SINE Alu 1 275 -37 254 93 0 23 chr6 17119648 17119691 -165295551 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 219 286 12 12 chr6 17119900 17119984 -165295258 - L2 LINE L2 -33 3239 3156 459 324 7 0 chr6 17120014 17120162 -165295080 - L2 LINE L2 -582 2732 2584 231 322 40 53 chr6 17120436 17120588 -165294654 + LTR67 LTR ERVL 99 248 -309 365 317 89 86 chr6 17120904 17121582 -165293660 - L2 LINE L2 -974 2340 1655 1686 176 3 30 chr6 17121582 17121884 -165293358 - AluJb SINE Alu -16 296 3 365 317 89 86 chr6 17121884 17122471 -165292771 - L2 LINE L2 -1659 1655 1071 452 269 48 36 chr6 17122490 17122687 -165292555 + MER20B DNA MER1_type 1 202 -17 833 219 15 5 chr6 17122931 17123127 -165292115 - LTR16B LTR ERVL -6 458 261 2163 138 0 6 chr6 17123414 17123725 -165291517 - AluSx SINE Alu 0 312 4 220 308 48 0 chr6 17123931 17124035 -165291207 + MIR SINE MIR 139 247 -15 21 0 0 0 chr6 17125198 17125219 -165290023 + AT_rich Low_complexity Low_complexity 1 21 0 227 208 0 0 chr6 17125247 17125300 -165289942 - MIR SINE MIR -13 249 197 2277 147 34 54 chr6 17125389 17125830 -165289412 + MSTB1 LTR MaLR 1 432 0 1054 240 12 4 chr6 17125994 17126248 -165288994 - MIR SINE MIR -1 261 6 1792 156 184 11 chr6 17126455 17126820 -165288422 + MSTA LTR MaLR 1 428 0 536 224 10 83 chr6 17127930 17128052 -165287190 - MER5B DNA MER1_type 0 178 73 548 213 19 0 chr6 17128052 17128160 -165287082 + MER81 DNA DNA 4 113 -1 536 224 10 83 chr6 17128160 17128229 -165287013 - MER5B DNA MER1_type -105 73 1 768 218 23 11 chr6 17128785 17128959 -165286283 + MER5B DNA MER1_type 3 178 0 938 185 28 0 chr6 17128970 17129148 -165286094 + MER5A DNA MER1_type 4 186 -3 288 185 0 0 chr6 17129960 17130014 -165285228 - AluJb SINE Alu 0 302 249 1276 135 0 16 chr6 17130014 17130206 -165285036 - AluJb SINE Alu -123 189 1 378 290 146 38 chr6 17130288 17130446 -165284796 - MIR SINE MIR -62 146 16 1732 206 161 33 chr6 17130561 17131021 -165284221 + LTR40a LTR ERVL 1 519 0 4575 117 15 24 chr6 17131466 17132183 -165283059 - MER50 LTR ERV1 -23 711 1 555 201 179 0 chr6 17133199 17133333 -165281909 + MER5A DNA MER1_type 9 166 -23 2114 116 0 23 chr6 17133360 17133661 -165281581 + AluSg SINE Alu 1 294 -16 314 203 0 40 chr6 17134642 17134716 -165280526 + 7SK RNA RNA 3 73 -120 214 155 0 28 chr6 17135250 17135321 -165279921 + (CA)n Simple_repeat Simple_repeat 1 69 0 3866 102 34 51 chr6 17135373 17135983 -165279259 + MER4A LTR ERV1 1 600 0 375 171 18 9 chr6 17136034 17136145 -165279097 + (CA)n Simple_repeat Simple_repeat 2 113 0 2255 109 0 0 chr6 17136598 17136905 -165278337 - AluSx SINE Alu 0 307 1 341 302 26 55 chr6 17136940 17137097 -165278145 + MIR SINE MIR 37 187 -75 2094 151 0 10 chr6 17137097 17137408 -165277834 - AluJb SINE Alu -4 308 1 341 302 26 55 chr6 17137408 17137451 -165277791 + MIR SINE MIR 187 230 -32 234 0 0 0 chr6 17137506 17137532 -165277710 + (CA)n Simple_repeat Simple_repeat 2 27 0 221 226 58 15 chr6 17137533 17137670 -165277572 + (TTATA)n Simple_repeat Simple_repeat 2 144 0 2378 82 0 10 chr6 17137894 17138198 -165277044 - AluSc SINE Alu -8 301 1 2330 118 118 20 chr6 17139416 17139806 -165275436 + MSTA LTR MaLR 1 428 0 586 273 34 0 chr6 17139831 17140007 -165275235 + MIR SINE MIR 7 188 -74 1721 131 103 22 chr6 17140819 17141131 -165274111 + MER1B DNA MER1_type 1 337 0 2270 112 0 0 chr6 17141263 17141557 -165273685 - AluSc SINE Alu -15 294 1 258 349 48 30 chr6 17141567 17141733 -165273509 - MIR SINE MIR -74 188 20 1984 128 3 7 chr6 17141852 17142158 -165273084 + AluSx SINE Alu 3 307 0 224 735 0 0 chr6 17142206 17142342 -165272900 + A-rich Low_complexity Low_complexity 1 136 0 1845 205 34 38 chr6 17143202 17143483 -165271759 - MLT1C LTR MaLR 0 467 186 2258 123 0 0 chr6 17143483 17143791 -165271451 - AluSx SINE Alu -4 308 1 1845 205 34 38 chr6 17143791 17143952 -165271290 - MLT1C LTR MaLR -281 186 25 2197 186 47 2 chr6 17143952 17144360 -165270882 + MSTB LTR MaLR 1 426 0 1845 205 34 38 chr6 17144360 17144385 -165270857 - MLT1C LTR MaLR -442 25 1 204 162 27 0 chr6 17144635 17144672 -165270570 + GA-rich Low_complexity Low_complexity 4 41 0 230 330 68 15 chr6 17146079 17146343 -165268899 + L1MC/D LINE L1 4781 5058 -1088 297 312 70 19 chr6 17147591 17147748 -165267494 - MIR3 SINE MIR -5 203 39 22 35 0 0 chr6 17148185 17148214 -165267028 + AT_rich Low_complexity Low_complexity 1 29 0 39 60 0 0 chr6 17148407 17148474 -165266768 + AT_rich Low_complexity Low_complexity 1 67 0 280 218 141 0 chr6 17148540 17148618 -165266624 + MIR3 SINE MIR 107 195 -13 2134 133 7 0 chr6 17148847 17149141 -165266101 - AluSx SINE Alu -12 300 5 2248 88 17 3 chr6 17149745 17150040 -165265202 + AluSp SINE Alu 1 299 -14 356 100 33 56 chr6 17150040 17150130 -165265112 + GA-rich Low_complexity Low_complexity 1 88 0 3864 136 102 107 chr6 17151017 17152401 -165262841 - pTR5 LTR ERV1 -3 2435 729 321 290 77 24 chr6 17152645 17152893 -165262349 + L1MC/D LINE L1 5123 5383 -763 257 362 58 31 chr6 17153723 17153980 -165261262 + L1MC/D LINE L1 5526 5789 -2019 2109 140 0 9 chr6 17153980 17154295 -165260947 + AluSx SINE Alu 1 312 0 27 0 0 0 chr6 17154537 17154564 -165260678 + AT_rich Low_complexity Low_complexity 1 27 0 1320 150 122 0 chr6 17155642 17155888 -165259354 - LTR47A LTR ERVL -42 410 135 2369 130 7 94 chr6 17155988 17156388 -165258854 - L1PB4 LINE L1 -14 6142 5783 231 88 0 0 chr6 17156388 17156422 -165258820 + (TA)n Simple_repeat Simple_repeat 2 35 0 2369 130 7 94 chr6 17156422 17156467 -165258775 - L1PB4 LINE L1 -373 5783 5736 1805 155 0 43 chr6 17157534 17157856 -165257386 - AluJb SINE Alu -4 308 1 304 183 17 5 chr6 17158048 17158165 -165257077 - MER5B DNA MER1_type 0 178 2 3360 193 42 3 chr6 17158461 17159123 -165256119 - L1MC3 LINE L1 -11 7774 7087 2161 180 51 18 chr6 17159400 17159851 -165255391 + MLT1C LTR MaLR 1 466 -1 2059 125 10 13 chr6 17159897 17160067 -165255175 - AluSx SINE Alu -9 303 133 189 74 0 0 chr6 17160067 17160094 -165255148 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2059 125 10 13 chr6 17160094 17160227 -165255015 - AluSx SINE Alu -179 133 1 897 294 36 33 chr6 17160545 17160851 -165254391 - LTR16A LTR ERVL -15 435 129 276 206 32 0 chr6 17160951 17161014 -165254228 - MLT1C LTR MaLR -399 68 4 615 226 0 0 chr6 17161180 17161286 -165253956 + LTR39 LTR ERV1 673 778 -5 4435 163 52 4 chr6 17161824 17162571 -165252671 + LTR39 LTR ERV1 1 783 0 335 237 59 74 chr6 17163023 17163158 -165252084 + MIR SINE MIR 57 189 -73 378 42 0 0 chr6 17164096 17164144 -165251098 + (CA)n Simple_repeat Simple_repeat 2 49 0 210 91 0 0 chr6 17164207 17164240 -165251002 + (TC)n Simple_repeat Simple_repeat 2 34 0 1713 248 93 77 chr6 17164689 17165545 -165249697 + L1MC4a LINE L1 5296 6165 -1643 335 277 87 33 chr6 17165774 17165958 -165249284 + MIR SINE MIR 8 201 -61 180 0 0 0 chr6 17166735 17166755 -165248487 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 182 182 0 0 chr6 17166890 17166923 -165248319 - L3 LINE CR1 -15 1562 1530 * 347 280 208 0 chr6 17166899 17167024 -165248218 - MIR3 SINE MIR -28 180 30 225 0 0 0 chr6 17167117 17167142 -165248100 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 588 296 140 40 chr6 17167766 17168188 -165247054 - MLT1J LTR MaLR -17 494 31 1138 207 83 109 chr6 17169360 17169936 -165245306 + MER34B LTR ERV1 5 565 0 183 308 189 0 chr6 17170942 17171085 -165244157 + MIR SINE MIR 77 246 -16 1704 152 0 79 chr6 17171088 17171416 -165243826 - AluJo SINE Alu -8 304 3 1940 209 34 5 chr6 17172211 17172623 -165242619 + MSTB LTR MaLR 3 426 0 967 177 0 0 chr6 17172725 17172883 -165242359 - FRAM SINE Alu -6 170 13 2089 102 6 57 chr6 17173904 17174218 -165241024 + AluSx SINE Alu 1 298 -14 192 292 188 0 chr6 17174223 17174319 -165240923 - L2 LINE L2 0 3313 3200 335 277 124 37 chr6 17175815 17176155 -165239087 + L2 LINE L2 2861 3290 -23 192 77 0 0 chr6 17176159 17176185 -165239057 + (TG)n Simple_repeat Simple_repeat 2 27 0 191 61 30 0 chr6 17176886 17176919 -165238323 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 530 246 59 69 chr6 17177004 17177207 -165238035 - L2 LINE L2 -2 3311 3111 255 278 259 4 chr6 17177337 17177607 -165237635 - L2 LINE L2 -48 3265 2927 265 323 83 0 chr6 17178354 17178450 -165236792 - MIR SINE MIR -67 141 38 784 149 104 26 chr6 17178558 17178712 -165236530 + MER5B DNA MER1_type 13 178 0 21 0 0 0 chr6 17178881 17178902 -165236340 + AT_rich Low_complexity Low_complexity 1 21 0 2367 103 0 0 chr6 17179245 17179546 -165235696 + AluSg SINE Alu 1 301 -9 1142 191 4 52 chr6 17181524 17181564 -165233678 - MER58A DNA MER1_type -2199 221 181 1815 116 3 78 chr6 17181564 17181883 -165233359 - AluY SINE Alu -16 295 1 1142 191 4 52 chr6 17181883 17182073 -165233169 - MER58A DNA MER1_type -2239 181 2 399 245 142 0 chr6 17182157 17182263 -165232979 + MIR SINE MIR 2 122 -140 180 152 0 0 chr6 17182306 17182339 -165232903 + MIR SINE MIR 129 161 -101 454 321 20 10 chr6 17182340 17182536 -165232706 - LTR16C LTR ERVL 0 491 294 199 329 0 37 chr6 17182687 17182769 -165232473 + MIR SINE MIR 161 239 -23 2120 123 10 0 chr6 17183196 17183489 -165231753 - AluSx SINE Alu -16 296 1 408 212 121 66 chr6 17184199 17184397 -165230845 - MLT1L LTR MaLR 0 615 407 217 0 0 57 chr6 17184816 17184851 -165230391 + (CCA)n Simple_repeat Simple_repeat 3 35 0 473 342 34 58 chr6 17186370 17186665 -165228577 - L2 LINE L2 0 3272 2985 749 154 0 0 chr6 17186670 17186780 -165228462 + AluJb SINE Alu 2 111 -201 337 244 0 12 chr6 17186780 17186866 -165228376 + MER61E LTR ERV1 1 85 -484 238 254 0 17 chr6 17186949 17187008 -165228234 + LTR19B LTR ERV1 227 284 -296 * 2444 177 22 44 chr6 17186987 17187444 -165227798 + MER61E LTR ERV1 85 531 -38 1232 133 6 0 chr6 17187467 17187648 -165227594 + AluJb SINE Alu 107 288 -24 228 319 7 52 chr6 17187755 17187890 -165227352 - L2 LINE L2 -455 2859 2731 384 276 171 7 chr6 17188633 17188696 -165226546 + MER5B DNA MER1_type 2 53 -125 633 193 0 0 chr6 17188696 17188815 -165226427 + L1PA16 LINE L1 6043 6161 -5 2415 135 38 19 chr6 17188818 17189189 -165226053 + MER83B LTR ERV1 1 378 0 384 276 171 7 chr6 17189189 17189273 -165225969 + MER5B DNA MER1_type 54 178 0 304 276 144 83 chr6 17190009 17190322 -165224920 + MER77 LTR ERV1 156 529 -76 1858 163 0 0 chr6 17190826 17191114 -165224128 + AluJo SINE Alu 4 291 -21 598 154 22 39 chr6 17191123 17191305 -165223937 + GA-rich Low_complexity Low_complexity 1 179 0 558 304 66 0 chr6 17192771 17192998 -165222244 - MIR SINE MIR -3 259 18 3916 94 0 23 chr6 17193151 17193336 -165221906 + MER9 LTR ERVK 1 189 -322 2615 58 0 0 chr6 17193336 17193647 -165221595 - AluY SINE Alu 0 311 1 3916 94 0 23 chr6 17193647 17193984 -165221258 + MER9 LTR ERVK 189 511 0 2389 98 3 0 chr6 17194924 17195229 -165220013 - AluSp SINE Alu -7 306 1 323 304 149 41 chr6 17195338 17195700 -165219542 - L2 LINE L2 -2 3311 2911 43430 37 22 1 chr6 17195862 17201887 -165213355 - L1PA3 LINE L1 -4 6151 1 199 214 0 0 chr6 17202717 17202759 -165212483 + L2 LINE L2 3272 3313 0 462 289 146 16 chr6 17203083 17203329 -165211913 - L3 LINE CR1 -721 856 579 850 261 73 46 chr6 17203366 17203640 -165211602 - MLT1J LTR MaLR -1 510 226 5141 119 11 7 chr6 17203640 17204364 -165210878 - LTR8A LTR ERV1 0 727 1 850 261 73 46 chr6 17204364 17204392 -165210850 - MLT1J LTR MaLR -285 226 200 2121 98 0 0 chr6 17204406 17204671 -165210571 - AluSg SINE Alu -45 265 1 4356 184 40 15 chr6 17204951 17205827 -165209415 + MER4D LTR ERV1 1 898 -5 236 312 97 0 chr6 17205992 17206085 -165209157 - MLT2F LTR ERVL 0 663 562 633 248 145 14 chr6 17206205 17206487 -165208755 - MLT2F LTR ERVL -319 344 26 1932 206 73 108 chr6 17207770 17208242 -165207000 - L1ME3 LINE L1 -2 6160 5673 2232 194 43 62 chr6 17208242 17208772 -165206470 + MLT2B1 LTR ERVL 1 520 0 1932 206 73 108 chr6 17208772 17208802 -165206440 - L1ME3 LINE L1 -489 5673 5643 2004 159 0 0 chr6 17208802 17209098 -165206144 - AluSx SINE Alu -16 296 1 1932 206 73 108 chr6 17209098 17209482 -165205760 - L1ME3 LINE L1 -519 5643 5304 257 231 0 0 chr6 17209760 17209812 -165205430 + L2 LINE L2 3212 3263 -9 257 229 147 28 chr6 17209839 17209948 -165205294 - HAL1b LINE L1 -472 876 755 1038 249 99 57 chr6 17210029 17210599 -165204643 + MLT1H1 LTR MaLR 2 555 0 1464 189 18 11 chr6 17211049 17211334 -165203908 + AluJo SINE Alu 1 287 -25 37 0 0 0 chr6 17211334 17211371 -165203871 + AT_rich Low_complexity Low_complexity 1 37 0 1102 248 65 83 chr6 17211382 17212104 -165203138 - HAL1 LINE L1 -824 1683 975 604 162 19 0 chr6 17212520 17212625 -165202617 - LTR47A LTR ERVL -343 109 3 630 233 53 72 chr6 17213339 17213696 -165201546 - MLT1H LTR MaLR -16 533 109 198 317 49 24 chr6 17213759 17213882 -165201360 - MIR SINE MIR -27 235 110 2153 95 3 0 chr6 17214102 17214385 -165200857 + THE1B-int LTR MaLR 1297 1580 0 2277 144 36 30 chr6 17214385 17214747 -165200495 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr6 17214903 17214925 -165200317 + AT_rich Low_complexity Low_complexity 1 22 0 1976 143 60 33 chr6 17214954 17215319 -165199923 - THE1C LTR MaLR 0 375 1 183 42 0 0 chr6 17216118 17216142 -165199100 + (CA)n Simple_repeat Simple_repeat 1 24 0 232 277 40 50 chr6 17216372 17216473 -165198769 - MER5A DNA MER1_type -9 180 81 309 236 112 11 chr6 17216511 17216600 -165198642 + L2 LINE L2 2219 2316 -998 1520 127 9 18 chr6 17217728 17217957 -165197285 - AluSg/x SINE Alu 0 310 84 1666 174 34 7 chr6 17218305 17218603 -165196639 - AluJo SINE Alu -6 306 1 255 65 0 81 chr6 17220017 17220079 -165195163 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 345 318 23 8 chr6 17220162 17220291 -165194951 + MIR3 SINE MIR 10 140 -68 1609 165 0 84 chr6 17220771 17220917 -165194325 + AluJb SINE Alu 1 105 -207 2510 83 0 0 chr6 17220917 17221219 -165194023 + AluY SINE Alu 1 302 -9 1609 165 0 84 chr6 17221219 17221405 -165193837 + AluJb SINE Alu 105 305 -7 508 290 7 14 chr6 17222194 17222339 -165192903 - MER5B DNA MER1_type -12 166 23 366 322 84 7 chr6 17222395 17222538 -165192704 + MER5B DNA MER1_type 25 178 0 2171 114 0 0 chr6 17223288 17223587 -165191655 - AluSx SINE Alu 0 312 14 191 204 20 0 chr6 17223646 17223695 -165191547 + (CA)n Simple_repeat Simple_repeat 1 50 0 705 229 88 0 chr6 17224679 17224849 -165190393 + MIR SINE MIR 29 213 -49 332 349 48 66 chr6 17224917 17225011 -165190231 + L2 LINE L2 2456 2550 -764 2384 79 7 0 chr6 17225011 17225315 -165189927 - AluSp SINE Alu -7 306 1 332 349 48 66 chr6 17225315 17225616 -165189626 + L2 LINE L2 2550 2844 -470 212 256 0 0 chr6 17225700 17225743 -165189499 + polypyrimidine Low_complexity Low_complexity 5 47 0 356 289 40 40 chr6 17228110 17228335 -165186907 - MLT1J LTR MaLR 0 511 287 2212 85 97 22 chr6 17228340 17228659 -165186583 + MER61A LTR ERV1 1 343 0 2170 65 0 4 chr6 17229348 17229610 -165185632 - AluSc SINE Alu -14 295 35 570 238 139 0 chr6 17229941 17230092 -165185150 + MER45A DNA AcHobo 1 172 -6 593 346 11 23 chr6 17230103 17230366 -165184876 + MIR SINE MIR 2 261 -1 649 262 123 71 chr6 17230390 17230730 -165184512 - L2 LINE L2 -4 3309 2952 2232 107 0 0 chr6 17230971 17231262 -165183980 - AluSg SINE Alu -9 301 11 573 139 12 12 chr6 17231734 17231900 -165183342 + GA-rich Low_complexity Low_complexity 1 166 0 3355 173 65 37 chr6 17233295 17233470 -165181772 + L1MB3 LINE L1 5338 5507 -676 2523 75 0 0 chr6 17233470 17233777 -165181465 - AluY SINE Alu -4 307 1 3355 173 65 37 chr6 17233777 17234316 -165180926 + L1MB3 LINE L1 5507 6088 -95 2237 89 20 3 chr6 17234316 17234609 -165180633 - AluSx SINE Alu -14 298 1 3355 173 65 37 chr6 17234609 17234694 -165180548 + L1MB3 LINE L1 6088 6169 -14 393 22 0 0 chr6 17234694 17234740 -165180502 + (CA)n Simple_repeat Simple_repeat 1 46 0 251 24 71 0 chr6 17235310 17235352 -165179890 + T-rich Low_complexity Low_complexity 2 180 0 1687 183 3 3 chr6 17235352 17235636 -165179606 - AluJb SINE Alu -28 284 1 3973 133 139 88 chr6 17236519 17237868 -165177374 - pTR5 LTR ERV1 -143 2295 743 924 289 89 58 chr6 17237887 17238564 -165176678 + L1MEd LINE L1 2 712 -5407 207 69 0 0 chr6 17238564 17238593 -165176649 + (CA)n Simple_repeat Simple_repeat 1 29 0 924 289 89 58 chr6 17238593 17238772 -165176470 + L1MEd LINE L1 712 884 -5235 44 0 0 0 chr6 17238854 17238898 -165176344 + AT_rich Low_complexity Low_complexity 1 44 0 364 256 88 82 chr6 17238898 17239093 -165176149 + L1MEd LINE L1 814 1006 -5137 2215 96 3 35 chr6 17239093 17239407 -165175835 + AluSx SINE Alu 7 310 -2 364 256 88 82 chr6 17239407 17239652 -165175590 + L1MEd LINE L1 1006 1281 -4862 224 217 67 0 chr6 17239695 17239755 -165175487 - MIR SINE MIR -1 261 198 227 81 0 54 chr6 17240015 17240052 -165175190 - MER57B LTR ERV1 -319 115 81 201 366 0 12 chr6 17240052 17240134 -165175108 - MER5B DNA MER1_type -30 148 68 459 184 61 0 chr6 17240288 17240386 -165174856 - MER5A DNA MER1_type -83 106 3 251 150 0 0 chr6 17240428 17240468 -165174774 - MER5B DNA MER1_type -2 176 137 1301 165 70 70 chr6 17240478 17240679 -165174563 - MLT1A1 LTR MaLR -13 352 149 2104 117 3 31 chr6 17240679 17240996 -165174246 - AluSx SINE Alu -4 308 1 1301 165 70 70 chr6 17240996 17241122 -165174120 - MLT1A1 LTR MaLR -215 150 25 232 330 19 29 chr6 17241129 17241151 -165174091 - MER5B DNA MER1_type -37 141 120 1232 184 42 42 chr6 17241151 17241390 -165173852 + MER8 DNA MER2_type 1 239 0 232 330 19 29 chr6 17241390 17241470 -165173772 - MER5B DNA MER1_type -58 120 40 21 57 0 0 chr6 17242773 17242808 -165172434 + AT_rich Low_complexity Low_complexity 1 35 0 444 37 0 0 chr6 17242904 17242958 -165172284 + (TG)n Simple_repeat Simple_repeat 2 55 0 439 186 0 0 chr6 17243962 17244032 -165171210 - MER8 DNA MER2_type 0 239 170 * 2665 136 36 23 chr6 17244021 17244461 -165170781 + Tigger2 DNA MER2_type 2273 2718 0 280 344 75 0 chr6 17244554 17244647 -165170595 + L2 LINE L2 3173 3272 0 2297 94 0 16 chr6 17245294 17245601 -165169641 + AluSq SINE Alu 1 302 -11 198 194 0 0 chr6 17246296 17246327 -165168915 - MIR SINE MIR -63 145 115 508 178 19 19 chr6 17246479 17246586 -165168656 + MER5A DNA MER1_type 7 113 -76 3892 136 5 8 chr6 17247158 17247760 -165167482 + L1PA16 LINE L1 5545 6144 -22 261 263 103 32 chr6 17249048 17249204 -165166038 + MIR SINE MIR 96 262 0 2079 170 80 3 chr6 17249542 17249907 -165165335 + MER47B DNA MER2_type 26 418 0 1538 219 19 27 chr6 17250871 17251237 -165164005 - MLT1A2 LTR MaLR -6 368 6 315 0 0 0 chr6 17252072 17252107 -165163135 + (CA)n Simple_repeat Simple_repeat 2 36 0 2113 202 33 54 chr6 17252131 17252647 -165162595 - MLT1D LTR MaLR 0 505 1 202 305 0 0 chr6 17253385 17253444 -165161798 - L2 LINE L2 -8 3264 3206 1874 120 8 2 chr6 17253694 17253971 -165161271 + THE1B LTR MaLR 1 293 -62 1689 185 6 22 chr6 17254766 17255080 -165160162 + AluJo SINE Alu 1 309 -3 184 320 10 30 chr6 17255330 17255430 -165159812 + MIR SINE MIR 61 158 -104 281 358 37 22 chr6 17255682 17255816 -165159426 + L2 LINE L2 3132 3267 -5 675 239 40 105 chr6 17256348 17256624 -165158618 - MIR SINE MIR -4 258 1 2199 140 83 34 chr6 17256991 17257060 -165158182 - MSTA LTR MaLR 0 428 364 2088 90 76 0 chr6 17257060 17257337 -165157905 + AluSp SINE Alu 1 298 -15 2199 140 83 34 chr6 17257337 17257675 -165157567 - MSTA LTR MaLR -64 364 1 387 0 0 0 chr6 17258317 17258360 -165156882 + (TG)n Simple_repeat Simple_repeat 2 44 0 814 144 0 0 chr6 17259756 17259867 -165155375 + FLAM_C SINE Alu 1 111 -32 207 0 0 0 chr6 17259879 17259902 -165155340 + (TTG)n Simple_repeat Simple_repeat 2 24 0 279 296 83 46 chr6 17260173 17260281 -165154961 + L2 LINE L2 3161 3272 0 369 241 65 9 chr6 17260658 17260766 -165154476 + MIR SINE MIR 65 178 -84 2447 90 0 0 chr6 17261435 17261736 -165153506 + AluSx SINE Alu 1 301 -11 2217 101 7 33 chr6 17261804 17262111 -165153131 - AluSq SINE Alu -14 299 1 1848 151 20 7 chr6 17262432 17262736 -165152506 + MER46B DNA MER2_type 2 184 -52 21 0 0 0 chr6 17263829 17263850 -165151392 + AT_rich Low_complexity Low_complexity 1 21 0 2186 119 3 0 chr6 17264015 17264309 -165150933 + AluSx SINE Alu 6 300 -12 202 204 0 0 chr6 17264871 17264915 -165150327 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 445 338 122 31 chr6 17265046 17265566 -165149676 - L2 LINE L2 -180 3092 2513 588 240 0 8 chr6 17265843 17265964 -165149278 - MER5C DNA MER1_type -200 124 5 1205 217 103 37 chr6 17265997 17266347 -165148895 - MLT1J2 LTR MaLR -40 410 38 1822 161 0 16 chr6 17267347 17267843 -165147399 + AluJb SINE Alu 1 312 0 1172 106 6 0 chr6 17267858 17268037 -165147205 + (GAA)n Simple_repeat Simple_repeat 1 180 0 355 238 195 43 chr6 17268062 17268247 -165146995 + MIR SINE MIR 50 262 0 1864 201 44 29 chr6 17268420 17268756 -165146486 - MLT1C LTR MaLR -8 459 113 2874 109 0 3 chr6 17268756 17269132 -165146110 + THE1C LTR MaLR 1 375 0 1864 201 44 29 chr6 17269132 17269247 -165145995 - MLT1C LTR MaLR -354 113 1 2178 98 0 0 chr6 17271235 17271531 -165143711 + AluSx SINE Alu 7 302 0 1506 114 50 5 chr6 17273512 17273732 -165141510 - MER30 DNA MER1_type 0 230 1 357 99 37 0 chr6 17273741 17273822 -165141420 + (TA)n Simple_repeat Simple_repeat 1 84 0 298 301 83 26 chr6 17273891 17274047 -165141195 + MIR3 SINE MIR 33 197 -11 2250 97 3 31 chr6 17274728 17275049 -165140193 - AluSp SINE Alu -1 312 1 273 57 0 0 chr6 17275261 17275296 -165139946 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 230 243 57 14 chr6 17275550 17275620 -165139622 - L2 LINE L2 -13 3300 3228 22 35 0 0 chr6 17276910 17276939 -165138303 + AT_rich Low_complexity Low_complexity 1 29 0 3445 167 22 2 chr6 17277264 17277815 -165137427 + MER68 LTR ERV1 1 562 0 1206 252 151 43 chr6 17277818 17278647 -165136595 - L2 LINE L2 -18 3295 2341 1764 157 3 26 chr6 17278647 17278952 -165136290 - AluJo SINE Alu -13 299 2 1206 252 151 43 chr6 17278952 17278963 -165136279 - L2 LINE L2 -972 2341 2333 566 278 102 5 chr6 17278966 17279153 -165136089 - MIR SINE MIR -56 206 2 2233 91 0 3 chr6 17279280 17279602 -165135640 - AluSp SINE Alu 0 321 1 234 62 0 0 chr6 17279636 17279668 -165135574 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 1773 263 24 0 chr6 17279723 17280141 -165135101 + LTR16A LTR ERVL 21 448 -2 237 33 0 0 chr6 17280157 17280187 -165135055 + (CA)n Simple_repeat Simple_repeat 1 30 0 607 158 21 0 chr6 17280187 17280282 -165134960 + L1MC4 LINE L1 6705 6801 -1241 816 214 0 12 chr6 17280282 17280450 -165134792 + AluJb SINE Alu 132 297 -15 6016 157 37 63 chr6 17280455 17281747 -165133495 + L1MC4 LINE L1 6793 7994 -1 2689 127 46 7 chr6 17281763 17282197 -165133045 - L1MB2 LINE L1 -2 6169 5719 2354 183 72 17 chr6 17282852 17283381 -165131861 + L1MD3 LINE L1 7435 7992 -3 180 149 64 85 chr6 17283446 17283493 -165131749 - L2 LINE L2 0 3272 3227 2296 116 0 0 chr6 17284032 17284333 -165130909 + AluSx SINE Alu 1 301 -11 2056 92 0 11 chr6 17285060 17285332 -165129910 - AluSx SINE Alu -43 269 1 324 256 244 12 chr6 17285392 17285560 -165129682 - MIR SINE MIR 0 262 56 22 56 0 0 chr6 17285661 17285697 -165129545 + AT_rich Low_complexity Low_complexity 1 36 0 823 249 37 12 chr6 17285945 17286186 -165129056 + L1M4 LINE L1 3535 3781 -2365 3312 119 4 13 chr6 17286386 17286858 -165128384 - MER1A DNA MER1_type 0 529 62 186 278 189 0 chr6 17287071 17287161 -165128081 - MIR SINE MIR -111 151 45 2480 55 0 7 chr6 17287660 17287969 -165127273 + AluY SINE Alu 1 307 -4 2335 103 0 3 chr6 17288352 17288653 -165126589 - AluSg SINE Alu -10 300 1 226 260 83 21 chr6 17288691 17288787 -165126455 - L1ME4a LINE L1 -97 6024 5923 291 211 100 11 chr6 17292108 17292198 -165123044 + L1ME4a LINE L1 6018 6115 -6 209 152 43 0 chr6 17293278 17293324 -165121918 + GA-rich Low_complexity Low_complexity 2 49 0 189 0 0 0 chr6 17293368 17293389 -165121853 + (T)n Simple_repeat Simple_repeat 1 21 0 1834 146 3 26 chr6 17293591 17293899 -165121343 + AluJo SINE Alu 4 304 -8 2093 110 3 3 chr6 17293953 17294259 -165120983 + AluSp SINE Alu 1 306 0 1696 188 0 7 chr6 17294278 17294586 -165120656 - AluJb SINE Alu -6 306 1 184 310 0 0 chr6 17295469 17295527 -165119715 - MIR SINE MIR -108 154 97 1957 124 3 22 chr6 17295550 17295865 -165119377 - AluJo SINE Alu -3 309 1 2318 75 6 40 chr6 17296392 17296755 -165118487 - AluSq SINE Alu 0 354 3 186 43 0 0 chr6 17299147 17299170 -165116072 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr6 17300099 17300120 -165115122 + AT_rich Low_complexity Low_complexity 1 21 0 216 203 51 68 chr6 17301237 17301296 -165113946 + MIR SINE MIR 22 79 -129 294 269 107 34 chr6 17302206 17302355 -165112887 + L2 LINE L2 3118 3277 -36 228 130 0 0 chr6 17303854 17303900 -165111342 + LTR66 LTR ERVL 394 439 -171 235 124 29 76 chr6 17303902 17304007 -165111235 + (TA)n Simple_repeat Simple_repeat 1 100 0 2765 219 92 34 chr6 17304204 17305307 -165109935 - L1ME2 LINE L1 -31 6133 4978 1894 80 53 0 chr6 17307258 17307520 -165107722 + AluY SINE Alu 21 296 -15 208 362 73 24 chr6 17308718 17308964 -165106278 - L2 LINE L2 -337 2977 2720 235 324 34 34 chr6 17309176 17309352 -165105890 - L2 LINE L2 -925 2389 2214 850 217 69 23 chr6 17310545 17310762 -165104480 - MLT1E LTR MaLR -4 589 363 301 230 120 40 chr6 17312239 17312339 -165102903 - MIR SINE MIR -36 226 119 258 259 0 62 chr6 17313690 17313771 -165101471 - MIR SINE MIR -117 91 16 24 0 0 0 chr6 17316465 17316489 -165098753 + AT_rich Low_complexity Low_complexity 1 24 0 576 81 0 0 chr6 17316489 17316563 -165098679 - U3 snRNA snRNA -143 74 1 21 0 0 0 chr6 17317036 17317057 -165098185 + AT_rich Low_complexity Low_complexity 1 21 0 212 233 192 0 chr6 17317129 17317202 -165098040 - L2 LINE L2 0 3313 3227 464 158 13 26 chr6 17318673 17318749 -165096493 + FLAM_A SINE Alu 9 83 -59 2309 87 0 26 chr6 17319193 17319504 -165095738 + AluY SINE Alu 9 311 0 310 349 92 64 chr6 17320415 17320481 -165094761 - L2 LINE L2 0 3272 3209 974 181 31 62 chr6 17320481 17320707 -165094535 + MER20 DNA MER1_type 1 219 0 310 349 92 64 chr6 17320707 17321076 -165094166 - L2 LINE L2 -63 3209 2825 482 193 156 46 chr6 17322267 17322376 -165092866 - FLAM_A SINE Alu -12 130 10 667 254 12 0 chr6 17322480 17322649 -165092593 - MIR SINE MIR -45 217 47 1105 228 185 92 chr6 17323751 17324469 -165090773 - LTR1B LTR ERV1 -37 983 1 677 218 79 12 chr6 17325501 17325666 -165089576 + L2 LINE L2 3119 3294 -19 537 254 19 89 chr6 17326698 17326808 -165088434 + MIR SINE MIR 56 146 -116 1539 28 0 6 chr6 17326808 17327015 -165088227 + AluY SINE Alu 104 309 0 537 254 19 89 chr6 17327015 17327116 -165088126 + MIR SINE MIR 146 253 -9 595 251 0 116 chr6 17327225 17327432 -165087810 + MER91B DNA MER1_type 8 190 0 385 238 9 38 chr6 17328282 17328387 -165086855 + L1ME1 LINE L1 6048 6149 -17 865 188 64 43 chr6 17328399 17328633 -165086609 + MLT1L LTR MaLR 1 239 -376 2121 108 17 0 chr6 17328637 17328924 -165086318 + AluSq SINE Alu 1 292 -21 979 136 0 0 chr6 17330787 17330919 -165084323 + FLAM_C SINE Alu 2 133 0 779 245 71 74 chr6 17331050 17331373 -165083869 + MLT1L LTR MaLR 294 615 0 912 157 82 0 chr6 17332562 17332721 -165082521 - FRAM SINE Alu -7 169 1 222 37 0 0 chr6 17333027 17333054 -165082188 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 507 185 11 0 chr6 17333070 17333162 -165082080 - L2 LINE L2 -41 3272 3180 1389 146 0 61 chr6 17333448 17333695 -165081547 - MER21B LTR ERV1 0 863 632 235 254 0 0 chr6 17333698 17333757 -165081485 - MLT1E3 LTR MaLR -453 171 113 5022 150 37 37 chr6 17333784 17334646 -165080596 - MER21B LTR ERV1 -1 862 1 203 250 68 80 chr6 17334646 17334734 -165080508 + MIR3 SINE MIR 118 204 -4 190 298 0 18 chr6 17335821 17335878 -165079364 + L2 LINE L2 3243 3298 -15 186 43 0 0 chr6 17335883 17335906 -165079336 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 2130 141 29 29 chr6 17337007 17337382 -165077860 + THE1C LTR MaLR 1 375 0 210 71 0 0 chr6 17337399 17337427 -165077815 + (T)n Simple_repeat Simple_repeat 1 28 0 1111 210 76 45 chr6 17337678 17338059 -165077183 - L1MC5 LINE L1 -26 7935 7543 1652 114 18 9 chr6 17338059 17338286 -165076956 - MER30 DNA MER1_type 0 230 2 577 286 11 11 chr6 17338310 17338495 -165076747 - L1M4 LINE L1 -1939 4207 4023 203 288 26 20 chr6 17338507 17338660 -165076582 + (TA)n Simple_repeat Simple_repeat 1 154 0 257 267 43 17 chr6 17338694 17338810 -165076432 - L1M4 LINE L1 -2208 3938 3820 1996 175 48 11 chr6 17339237 17339612 -165075630 + L1MC3 LINE L1 6119 7703 -82 551 183 29 0 chr6 17340278 17340382 -165074860 + L1MC3 LINE L1 7678 7784 -1 2144 126 3 0 chr6 17340538 17340832 -165074410 + AluSx SINE Alu 1 295 -17 1011 195 45 112 chr6 17341950 17342396 -165072846 - L1MC5 LINE L1 -35 7926 7511 1544 149 15 98 chr6 17343282 17343617 -165071625 - AluSq SINE Alu -6 307 1 334 285 67 36 chr6 17344126 17344263 -165070979 + MIR SINE MIR 31 175 -87 2400 118 108 8 chr6 17344263 17344652 -165070590 + MSTA LTR MaLR 1 428 0 334 285 67 36 chr6 17344652 17344679 -165070563 + MIR SINE MIR 175 200 -62 4674 62 3 10 chr6 17344706 17345284 -165069958 + L1PA8 LINE L1 5599 6172 0 1745 119 51 10 chr6 17345649 17345942 -165069300 - L1MA7 LINE L1 0 6291 5987 423 232 89 53 chr6 17346467 17346657 -165068585 - MIR SINE MIR -46 216 20 293 180 0 0 chr6 17347108 17347158 -165068084 + L2 LINE L2 3258 3307 -6 1547 140 48 62 chr6 17347259 17347502 -165067740 - MER7A DNA MER2_type -2692 346 108 1600 184 7 7 chr6 17347502 17347790 -165067452 + AluJb SINE Alu 1 288 -24 1547 140 48 62 chr6 17347790 17347838 -165067404 - MER7A DNA MER2_type -2930 108 61 238 221 183 77 chr6 17347921 17348025 -165067217 + LTR31 LTR ERV1 109 223 -396 341 234 0 0 chr6 17348054 17348118 -165067124 + MER72 LTR ERV1 377 440 -282 3373 134 51 84 chr6 17348133 17349397 -165065845 - pTR5 LTR ERV1 -143 2295 741 417 269 155 5 chr6 17349397 17349590 -165065652 + LTR31 LTR ERV1 337 558 -61 1748 158 15 130 chr6 17349600 17350061 -165065181 - LTR12 LTR ERV1 -254 460 53 239 269 0 0 chr6 17350061 17350113 -165065129 - LTR30 LTR ERV1 -670 52 1 229 344 0 0 chr6 17350166 17350230 -165065012 - MER7A DNA MER2_type -284 64 1 252 0 0 0 chr6 17350639 17350667 -165064575 + (A)n Simple_repeat Simple_repeat 1 28 0 2100 102 0 10 chr6 17350849 17351143 -165064099 - AluSx SINE Alu -1 311 21 2089 98 7 0 chr6 17354596 17354882 -165060360 + AluSc SINE Alu 1 288 -21 237 108 0 0 chr6 17354934 17354971 -165060271 + (AATTG)n Simple_repeat Simple_repeat 4 40 0 245 227 15 15 chr6 17356802 17356868 -165058374 + (CATA)n Simple_repeat Simple_repeat 2 67 0 407 155 0 77 chr6 17356868 17357062 -165058180 + (TA)n Simple_repeat Simple_repeat 1 179 0 213 154 31 46 chr6 17357068 17357133 -165058109 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 1595 167 10 48 chr6 17357522 17357834 -165057408 + AluJb SINE Alu 1 300 -12 308 275 19 113 chr6 17359076 17359236 -165056006 - MIR SINE MIR -10 252 108 234 0 0 0 chr6 17359538 17359564 -165055678 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1756 31 0 0 chr6 17359564 17359758 -165055484 - L1PA4 LINE L1 -10 6145 5952 205 367 16 23 chr6 17359880 17360008 -165055234 + MER5A DNA MER1_type 15 141 -48 1998 154 0 10 chr6 17360169 17360480 -165054762 - AluSx SINE Alu -4 308 1 775 218 0 0 chr6 17360518 17360651 -165054591 - FLAM_A SINE Alu 0 133 1 1123 75 0 0 chr6 17360685 17360819 -165054423 + AluY SINE Alu 1 134 -177 2395 86 0 3 chr6 17360819 17361123 -165054119 + AluY SINE Alu 1 303 -8 811 183 84 120 chr6 17361125 17361492 -165053750 - L1MC4 LINE L1 -1 8041 7688 639 229 65 6 chr6 17362352 17362522 -165052720 - MIR SINE MIR -1 261 82 3510 183 60 93 chr6 17362609 17363452 -165051790 + L1MC5 LINE L1 6696 7565 -396 799 163 0 52 chr6 17363452 17363587 -165051655 + FLAM_C SINE Alu 5 132 -1 3510 183 60 93 chr6 17363587 17363864 -165051378 + L1MC5 LINE L1 7565 7772 -189 698 233 0 8 chr6 17363864 17363997 -165051245 + FLAM_A SINE Alu 1 132 -1 3510 183 60 93 chr6 17363997 17364148 -165051094 + L1MC5 LINE L1 7772 7926 -35 1716 180 99 46 chr6 17364323 17364354 -165050888 + L1M1 LINE L1 18 46 -7519 2135 96 32 0 chr6 17364354 17364636 -165050606 + AluSp SINE Alu 1 291 -22 1716 180 99 46 chr6 17364636 17365016 -165050226 + L1M1 LINE L1 46 451 -7114 6008 150 70 54 chr6 17365020 17366776 -165048466 - pTR5 LTR ERV1 0 2438 738 1406 186 0 0 chr6 17366776 17367012 -165048230 - AluJb SINE Alu -76 236 1 2389 85 3 3 chr6 17369382 17369688 -165045554 - AluSg SINE Alu -4 306 1 538 173 10 139 chr6 17370166 17370278 -165044964 + L1MB8 LINE L1 4136 4210 -1936 718 138 81 32 chr6 17370278 17370401 -165044841 + FLAM_C SINE Alu 1 129 -4 538 173 10 139 chr6 17370401 17370496 -165044746 + L1MB8 LINE L1 4210 4316 -1830 2139 96 0 3 chr6 17370504 17370786 -165044456 + AluSx SINE Alu 15 295 -17 3362 202 52 13 chr6 17370786 17371770 -165043472 + L1MB8 LINE L1 4535 5555 -629 2507 126 8 3 chr6 17371783 17372139 -165043103 + L1PA16 LINE L1 5792 6149 -17 3429 172 1 55 chr6 17372158 17372816 -165042426 + L1MB8 LINE L1 5550 6172 -6 1159 90 13 0 chr6 17372953 17373108 -165042134 + AluJb SINE Alu 156 312 0 570 136 0 11 chr6 17373131 17373219 -165042023 + U6 snRNA snRNA 1 87 -20 277 304 22 11 chr6 17373238 17373330 -165041912 - MIR SINE MIR -99 109 17 1359 211 4 15 chr6 17374104 17374369 -165040873 - AluJb SINE Alu -50 262 1 543 249 62 28 chr6 17375294 17375471 -165039771 + MIR3 SINE MIR 12 194 -14 2278 82 3 0 chr6 17375475 17375778 -165039464 + AluSx SINE Alu 1 304 0 1596 117 91 25 chr6 17375916 17376190 -165039052 + AluSx SINE Alu 1 292 -20 1631 159 29 18 chr6 17377039 17377316 -165037926 + AluJo SINE Alu 1 280 -32 1142 163 5 0 chr6 17377328 17377512 -165037730 + AluJo SINE Alu 119 303 -9 27 49 0 0 chr6 17378367 17378408 -165036834 + AT_rich Low_complexity Low_complexity 1 41 0 1229 105 18 0 chr6 17378464 17378635 -165036607 - Charlie3 DNA MER1_type -5 2705 2532 1681 108 0 62 chr6 17428635 17428895 -164986347 + AluSg1 SINE Alu 59 302 -7 279 226 38 75 chr6 17429027 17429133 -164986109 + MER21B LTR ERV1 5 106 -757 * 352 227 0 0 chr6 17429131 17429197 -164986045 + MER21B LTR ERV1 19 84 -779 333 203 16 0 chr6 17429204 17429268 -164985974 + MER21B LTR ERV1 42 106 -757 * 1188 257 57 33 chr6 17429266 17429715 -164985527 + MER21B LTR ERV1 19 492 -371 1754 203 37 6 chr6 17429929 17430283 -164984959 - MLT1A1 LTR MaLR 0 365 1 257 250 59 0 chr6 17430309 17430377 -164984865 + MIR SINE MIR 81 152 -56 2637 75 94 17 chr6 17431355 17431771 -164983471 - LTR7 LTR ERV1 -2 448 1 2176 108 53 16 chr6 17431771 17432149 -164983093 - HERVH LTR ERV1 0 7713 7322 1378 120 18 5 chr6 17432147 17432364 -164982878 - HERVH LTR ERV1 -1894 5819 5600 * 4299 143 0 1 chr6 17432365 17433028 -164982214 - HERVH LTR ERV1 -2564 5149 4488 3398 97 4 6 chr6 17433030 17433533 -164981709 - HERVH LTR ERV1 -3720 3993 3492 * 16417 97 20 33 chr6 17433523 17436823 -164978419 - HERVH LTR ERV1 -4423 3290 1 2712 68 95 7 chr6 17436825 17437237 -164978005 - LTR7 LTR ERV1 -2 448 1 601 256 0 0 chr6 17437474 17437595 -164977647 - FLAM_C SINE Alu -21 122 2 194 337 74 0 chr6 17437641 17437736 -164977506 - MIR SINE MIR -62 146 45 225 269 0 0 chr6 17437804 17437856 -164977386 + LTR30 LTR ERV1 1 52 -670 297 109 0 22 chr6 17437856 17437902 -164977340 + LTR12 LTR ERV1 53 97 -617 2755 153 32 65 chr6 17437902 17438839 -164976403 + LTR12 LTR ERV1 57 1023 309 1989 86 76 31 chr6 17438839 17439129 -164976113 + AluY SINE Alu 1 303 -8 605 107 196 0 chr6 17439019 17439131 -164976111 + AluY SINE Alu 172 305 -6 * 2755 153 32 65 chr6 17439129 17439400 -164975842 + LTR12 LTR ERV1 1023 386 -328 2280 70 7 30 chr6 17439400 17439698 -164975544 + AluY SINE Alu 1 291 -20 2755 153 32 65 chr6 17439698 17440018 -164975224 + LTR12 LTR ERV1 385 714 0 1679 120 139 4 chr6 17440636 17440895 -164974347 - AluSx SINE Alu -15 297 4 245 185 0 56 chr6 17440917 17440971 -164974271 + MER58 DNA MER1_type 2 52 -289 899 146 13 13 chr6 17441047 17441205 -164974037 + L1MB3 LINE L1 6009 6166 -17 30 27 0 0 chr6 17441205 17441242 -164974000 + AT_rich Low_complexity Low_complexity 1 37 0 247 213 0 0 chr6 17441242 17441303 -164973939 - L1MB4 LINE L1 -28 6152 6092 32 26 0 0 chr6 17441304 17441343 -164973899 + AT_rich Low_complexity Low_complexity 1 39 0 348 316 88 10 chr6 17441463 17441656 -164973586 - MIR SINE MIR -7 255 48 1477 161 61 72 chr6 17441767 17441832 -164973410 - MLT1A1 LTR MaLR -8 357 293 2087 152 0 3 chr6 17441832 17442141 -164973101 + AluJb SINE Alu 1 308 -4 1477 161 61 72 chr6 17442141 17442436 -164972806 - MLT1A1 LTR MaLR -72 293 1 819 147 0 16 chr6 17443223 17443352 -164971890 + FLAM_C SINE Alu 1 127 -16 2117 148 0 3 chr6 17443522 17443827 -164971415 + AluJb SINE Alu 1 304 -8 750 272 204 27 chr6 17444016 17444247 -164970995 - L1ME4a LINE L1 -6 6115 5926 2263 107 16 3 chr6 17444247 17444555 -164970687 + AluSx SINE Alu 1 312 0 750 272 204 27 chr6 17444555 17445052 -164970190 - L1ME4a LINE L1 -195 5926 5258 793 170 7 22 chr6 17445146 17445281 -164969961 - FLAM_C SINE Alu 0 133 1 2378 99 0 3 chr6 17446130 17446432 -164968810 - AluSc SINE Alu -8 301 1 1796 176 0 39 chr6 17448094 17448406 -164966836 + AluJb SINE Alu 1 300 -12 2251 99 7 3 chr6 17448496 17448789 -164966453 - AluSx SINE Alu -18 294 1 220 307 40 13 chr6 17449884 17449959 -164965283 - L2 LINE L2 -3 3310 3234 333 316 58 6 chr6 17450060 17450231 -164965011 - L2 LINE L2 -232 3040 2861 202 306 82 37 chr6 17450544 17450678 -164964564 - MIR SINE MIR -35 227 88 1053 228 17 31 chr6 17451483 17451879 -164963363 - MLT1C LTR MaLR -6 384 1 203 250 0 0 chr6 17452697 17452737 -164962505 - L2 LINE L2 0 3313 3274 223 270 0 100 chr6 17452950 17453050 -164962192 + MER5A DNA MER1_type 1 90 -99 889 149 48 43 chr6 17453416 17453604 -164961638 + MER5A DNA MER1_type 1 189 0 2340 80 13 25 chr6 17453812 17454126 -164961116 - AluSg SINE Alu 0 310 1 319 246 32 87 chr6 17454687 17454813 -164960429 - L1ME4a LINE L1 -1 6120 6002 287 211 40 13 chr6 17454813 17454889 -164960353 + MIR SINE MIR 51 128 -134 2322 119 0 0 chr6 17455122 17455424 -164959818 - AluSx SINE Alu -7 305 4 2429 87 10 0 chr6 17457056 17457365 -164957877 + AluSq SINE Alu 1 312 -1 180 111 0 0 chr6 17458175 17458202 -164957040 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 2036 128 33 10 chr6 17458947 17459252 -164955990 + AluSx SINE Alu 1 312 0 319 271 112 47 chr6 17459369 17459539 -164955703 - MIR3 SINE MIR -9 199 19 4172 163 35 31 chr6 17460409 17461626 -164953616 + pTR5 LTR ERV1 761 2296 -142 197 377 66 9 chr6 17462065 17462171 -164953071 + L3 LINE CR1 1447 1558 -19 945 67 0 0 chr6 17462177 17462296 -164952946 - AluSx SINE Alu 0 312 194 1089 121 0 0 chr6 17462297 17462437 -164952805 - AluSx SINE Alu -172 141 2 2222 135 0 0 chr6 17463531 17463843 -164951399 - AluSx SINE Alu 0 312 1 1868 171 7 0 chr6 17463948 17464246 -164950996 + AluJo SINE Alu 1 300 -12 207 0 0 0 chr6 17465336 17465359 -164949883 + (TC)n Simple_repeat Simple_repeat 2 24 0 231 345 99 9 chr6 17465463 17465598 -164949644 - MIR SINE MIR -61 147 49 1935 107 0 0 chr6 17465882 17466125 -164949117 + AluSq SINE Alu 48 290 -23 200 152 43 0 chr6 17467774 17467820 -164947422 + CT-rich Low_complexity Low_complexity 3 50 0 2216 119 13 10 chr6 17468985 17469296 -164945946 - AluJb SINE Alu 0 312 1 2156 120 13 0 chr6 17469511 17469810 -164945432 - AluSx SINE Alu -9 303 1 1921 166 10 0 chr6 17470709 17471005 -164944237 - AluJo SINE Alu -13 299 1 26 50 0 0 chr6 17472882 17472922 -164942320 + AT_rich Low_complexity Low_complexity 1 40 0 269 243 114 0 chr6 17479646 17479716 -164935526 + L2 LINE L2 3153 3230 -42 2153 112 0 23 chr6 17479717 17480022 -164935220 + AluSx SINE Alu 1 298 -14 244 201 9 50 chr6 17480039 17480145 -164935097 + L1MEd LINE L1 11 163 -5956 2042 131 3 20 chr6 17480201 17480506 -164934736 + AluSq SINE Alu 1 300 -13 1181 92 0 7 chr6 17480506 17480652 -164934590 + AluSg/x SINE Alu 135 279 -33 351 0 0 0 chr6 17480652 17480691 -164934551 + (CA)n Simple_repeat Simple_repeat 1 39 0 2012 134 7 10 chr6 17481266 17481587 -164933655 + AluJo SINE Alu 1 320 0 483 273 35 51 chr6 17481620 17482024 -164933218 + L1MEd LINE L1 920 1210 -4909 1639 111 0 0 chr6 17482072 17482280 -164932962 + AluSq SINE Alu 1 208 -105 1575 100 0 27 chr6 17482330 17482550 -164932692 - AluSc SINE Alu -85 224 11 430 325 61 35 chr6 17482881 17483112 -164932130 - MIR SINE MIR -6 256 20 206 246 49 0 chr6 17483359 17483420 -164931822 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 261 86 0 0 chr6 17484101 17484136 -164931106 + Alu SINE Alu 18 52 -250 1073 55 31 0 chr6 17484344 17484472 -164930770 + AluSq/x SINE Alu 1 132 -181 757 223 34 107 chr6 17484478 17484663 -164930579 + MER87 LTR ERV1 239 391 -150 2005 134 14 7 chr6 17484663 17484955 -164930287 - AluSx SINE Alu -18 294 1 757 223 34 107 chr6 17484955 17485096 -164930146 + MER87 LTR ERV1 391 541 0 253 151 0 57 chr6 17485112 17485165 -164930077 + Alu SINE Alu 236 285 -17 216 0 0 0 chr6 17485165 17485189 -164930053 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2189 110 0 17 chr6 17485333 17485632 -164929610 - AluSx SINE Alu -14 298 5 2320 102 16 0 chr6 17486382 17486685 -164928557 - AluSx SINE Alu -4 308 1 206 244 0 0 chr6 17486744 17486785 -164928457 - L2 LINE L2 -9 3263 3223 885 276 118 34 chr6 17486884 17487427 -164927815 + L2 LINE L2 2295 3082 -231 1663 157 3 64 chr6 17487443 17487756 -164927486 - AluJo SINE Alu -18 294 1 1884 130 34 25 chr6 17487773 17488096 -164927146 + MER1B DNA MER1_type 1 326 -13 242 226 0 151 chr6 17488138 17488231 -164927011 + L2 LINE L2 3221 3299 -14 2289 115 0 6 chr6 17488239 17488551 -164926691 + AluSg SINE Alu 1 310 0 180 0 0 0 chr6 17488640 17488660 -164926582 + (T)n Simple_repeat Simple_repeat 1 20 0 2148 121 0 0 chr6 17489081 17489390 -164925852 - AluSx SINE Alu 0 311 3 1998 137 0 3 chr6 17490712 17490997 -164924245 + AluJo SINE Alu 11 294 -18 2564 161 77 4 chr6 17491015 17491519 -164923723 + L1MC2 LINE L1 5799 6339 -5 216 352 24 32 chr6 17492813 17492938 -164922304 - MIR3 SINE MIR -81 127 4 1972 150 0 10 chr6 17493707 17494020 -164921222 + AluJo SINE Alu 1 310 -2 235 234 0 0 chr6 17494050 17494097 -164921145 - MIR SINE MIR -68 140 94 2311 98 9 22 chr6 17495006 17495322 -164919920 + AluSx SINE Alu 1 312 0 1690 183 10 29 chr6 17495927 17496233 -164919009 + AluJo SINE Alu 1 300 -12 1841 166 43 116 chr6 17496648 17496886 -164918356 + MER74A LTR ERVL 1 255 -303 2329 101 0 0 chr6 17496886 17497184 -164918058 - AluSx SINE Alu -14 298 1 1841 166 43 116 chr6 17497184 17497524 -164917718 + MER74A LTR ERVL 255 537 -21 927 192 6 0 chr6 17497542 17497698 -164917544 - FAM SINE Alu -18 157 1 713 265 41 0 chr6 17497838 17498034 -164917208 - MER105 DNA DNA 0 204 1 780 21 0 0 chr6 17499400 17499494 -164915748 + (CTG)n Simple_repeat Simple_repeat 2 95 0 223 169 15 62 chr6 17500242 17500307 -164914935 + GA-rich Low_complexity Low_complexity 1 62 0 1804 117 0 64 chr6 17500428 17500726 -164914516 + AluSc SINE Alu 31 309 0 219 36 0 0 chr6 17501167 17501195 -164914047 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr6 17501839 17501866 -164913376 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 747 154 0 0 chr6 17501868 17501978 -164913264 - FLAM_C SINE Alu -26 117 8 1844 150 31 0 chr6 17502160 17502453 -164912789 - AluSx SINE Alu -10 302 1 2329 79 3 3 chr6 17502779 17503071 -164912171 - AluSx SINE Alu -20 292 1 218 204 56 0 chr6 17504158 17504212 -164911030 + GA-rich Low_complexity Low_complexity 1 57 0 517 216 288 0 chr6 17504606 17504745 -164910497 + MER5A DNA MER1_type 10 188 -1 1166 308 81 77 chr6 17505634 17506228 -164909014 + L3 LINE CR1 436 1035 -542 1787 150 86 4 chr6 17506228 17506508 -164908734 + AluJo SINE Alu 1 303 -9 1166 308 81 77 chr6 17506508 17506701 -164908541 + L3 LINE CR1 1035 1226 -351 338 278 111 50 chr6 17506720 17506900 -164908342 + L3 LINE CR1 1385 1575 -2 23 54 0 0 chr6 17507314 17507351 -164907891 + AT_rich Low_complexity Low_complexity 1 37 0 1107 238 83 45 chr6 17507370 17507815 -164907427 + MLT1C LTR MaLR 6 467 0 439 263 206 0 chr6 17507815 17507990 -164907252 - MIR SINE MIR -3 259 49 213 227 127 67 chr6 17509591 17509741 -164905501 - MIR SINE MIR -97 165 7 22 0 0 0 chr6 17509799 17509821 -164905421 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 31 chr6 17509962 17509982 -164905260 + AT_rich Low_complexity Low_complexity 1 21 -10 2252 96 0 0 chr6 17509982 17510273 -164904969 + AluY SINE Alu 1 291 -20 21 0 0 31 chr6 17510273 17510284 -164904958 + AT_rich Low_complexity Low_complexity 21 31 0 362 252 34 5 chr6 17511372 17511474 -164903768 - MIR SINE MIR -40 168 66 2433 85 0 0 chr6 17511557 17511851 -164903391 - AluSc SINE Alu -15 294 1 1221 241 108 70 chr6 17511878 17512396 -164902846 + MER77 LTR ERV1 62 599 -6 680 259 24 6 chr6 17513109 17513275 -164901967 + MER5B DNA MER1_type 10 178 0 2587 59 0 3 chr6 17513285 17513589 -164901653 - AluY SINE Alu -8 303 1 2141 92 26 29 chr6 17513648 17513954 -164901288 - AluSx SINE Alu -7 305 1 3138 170 48 50 chr6 17514059 17514812 -164900430 + L1MB3 LINE L1 5432 6182 -1 2293 71 4 4 chr6 17514834 17515136 -164900106 + AluY SINE Alu 1 302 0 467 277 18 24 chr6 17515481 17515647 -164899595 - MER58B DNA MER1_type 0 341 177 392 271 9 9 chr6 17515745 17515852 -164899390 - MER5A DNA MER1_type -82 107 1 2129 157 28 28 chr6 17516067 17516624 -164898618 + MLT2A2 LTR ERVL 3 554 0 210 37 0 0 chr6 17517829 17517856 -164897386 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1742 106 7 59 chr6 17517867 17518140 -164897102 - AluSq SINE Alu -54 259 1 23 0 0 0 chr6 17518140 17518163 -164897079 + AT_rich Low_complexity Low_complexity 1 23 0 309 238 12 12 chr6 17518414 17518498 -164896744 - AluJ/FRAM SINE Alu -1 301 218 5082 131 71 47 chr6 17518498 17519600 -164895642 + pTR5 LTR ERV1 769 2025 -413 244 298 0 0 chr6 17519600 17519694 -164895548 + LTR30 LTR ERV1 544 637 -85 1135 175 5 0 chr6 17519694 17519883 -164895359 + LTR12 LTR ERV1 369 558 -156 561 210 67 17 chr6 17519888 17520007 -164895235 - AluJo SINE Alu -58 254 130 667 248 0 0 chr6 17520011 17520136 -164895106 - AluJo SINE Alu -177 125 1 267 276 72 92 chr6 17520138 17520187 -164895055 + MIR SINE MIR 104 152 -110 1870 150 24 14 chr6 17520187 17520480 -164894762 + AluSq SINE Alu 1 296 -17 267 276 72 92 chr6 17520480 17520582 -164894660 + MIR SINE MIR 152 252 -10 312 268 43 46 chr6 17520624 17520743 -164894499 + MIR SINE MIR 10 125 -83 510 246 90 0 chr6 17520756 17520878 -164894364 + MIR SINE MIR 98 230 -32 2468 98 0 0 chr6 17520994 17521300 -164893942 + AluSc SINE Alu 1 306 -3 399 230 53 18 chr6 17521965 17522078 -164893164 + MIR SINE MIR 75 191 -71 336 271 60 84 chr6 17522522 17522571 -164892671 + MIR SINE MIR 95 144 -118 1817 155 3 23 chr6 17522571 17522874 -164892368 + AluJb SINE Alu 1 297 -15 336 271 60 84 chr6 17522874 17522990 -164892252 + MIR SINE MIR 144 256 -6 2106 140 0 16 chr6 17523159 17523473 -164891769 - AluJb SINE Alu -3 309 1 2723 160 49 13 chr6 17524445 17524971 -164890271 - MER44D DNA MER2_type 0 605 6 2237 119 0 3 chr6 17525164 17525467 -164889775 + AluSg SINE Alu 1 302 -8 333 284 83 24 chr6 17525592 17525761 -164889481 + MER5A DNA MER1_type 10 188 -1 555 240 149 7 chr6 17525772 17525926 -164889316 + MER5B DNA MER1_type 3 178 0 2191 98 25 0 chr6 17526033 17526319 -164888923 - AluY SINE Alu -16 295 3 2441 80 0 7 chr6 17527332 17527634 -164887608 - AluSx SINE Alu -12 300 1 2249 102 0 0 chr6 17528982 17529335 -164885907 - AluSx SINE Alu 0 353 1 4822 85 25 9 chr6 17529897 17530336 -164884906 + L1PB1 LINE L1 5457 5912 -239 9288 90 21 8 chr6 17530336 17531598 -164883644 + MER52C LTR ERV1 1 1278 0 4822 85 25 9 chr6 17531598 17531841 -164883401 + L1PB1 LINE L1 5912 6150 -1 180 215 169 0 chr6 17531873 17531938 -164883304 - L2 LINE L2 -1332 1982 1907 * 226 232 18 18 chr6 17531937 17531993 -164883249 - MER5B DNA MER1_type -4 174 119 24 0 0 0 chr6 17532151 17532175 -164883067 + AT_rich Low_complexity Low_complexity 1 24 0 329 252 76 42 chr6 17534975 17535094 -164880148 + L2 LINE L2 3191 3313 0 2425 65 7 0 chr6 17536075 17536367 -164878875 - AluY SINE Alu -17 294 1 563 69 0 0 chr6 17536836 17536908 -164878334 - L1PA5 LINE L1 -9 6145 6074 2307 109 0 7 chr6 17536943 17537246 -164877996 - AluSx SINE Alu -11 301 1 2430 103 0 0 chr6 17538266 17538576 -164876666 + AluSx SINE Alu 1 310 -2 249 33 0 0 chr6 17539100 17539130 -164876112 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 288 53 0 0 chr6 17539129 17539167 -164876075 + (CA)n Simple_repeat Simple_repeat 1 38 0 769 227 57 134 chr6 17539369 17539693 -164875549 + MLT1J LTR MaLR 24 293 -218 1868 122 4 11 chr6 17539693 17539963 -164875279 + AluSx SINE Alu 44 311 -1 769 227 57 134 chr6 17539963 17540167 -164875075 + MLT1J LTR MaLR 293 511 0 204 229 98 0 chr6 17540167 17540228 -164875014 - MIR3 SINE MIR -31 177 111 226 304 38 51 chr6 17541830 17541988 -164873254 - MIR SINE MIR -45 217 62 333 249 124 42 chr6 17542289 17542530 -164872712 - L1ME4a LINE L1 -2 6119 5859 1684 124 19 102 chr6 17543320 17543642 -164871600 - AluJo SINE Alu -17 295 1 1634 173 7 11 chr6 17544395 17544730 -164870512 + AluJb SINE Alu 1 334 0 2400 122 36 30 chr6 17545256 17545618 -164869624 + THE1B LTR MaLR 1 364 0 190 329 40 67 chr6 17545815 17545964 -164869278 - L2 LINE L2 -6 3266 3122 180 0 0 0 chr6 17548727 17548747 -164866495 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1421 161 37 4 chr6 17548779 17549021 -164866221 + MLT1A1 LTR MaLR 116 365 0 196 358 60 15 chr6 17549204 17549338 -164865904 - L2 LINE L2 -21 3251 3112 345 327 64 35 chr6 17550063 17550265 -164864977 - MIR SINE MIR -48 214 7 1732 158 11 7 chr6 17550283 17550602 -164864640 - AluJb SINE Alu 0 322 3 3784 102 17 4 chr6 17550636 17551158 -164864084 + L1PB1 LINE L1 5620 6148 -3 312 300 61 82 chr6 17551324 17551604 -164863638 - L2 LINE L2 0 3272 2999 220 220 0 20 chr6 17551633 17551683 -164863559 + GA-rich Low_complexity Low_complexity 4 52 0 232 217 22 0 chr6 17552005 17552051 -164863191 - L2 LINE L2 -2 3270 3224 1964 189 94 27 chr6 17552569 17552753 -164862489 + MLT1C LTR MaLR 1 171 -296 2152 98 14 0 chr6 17552753 17553039 -164862203 + AluSg SINE Alu 1 290 -20 1964 189 94 27 chr6 17553039 17553292 -164861950 + MLT1C LTR MaLR 171 467 0 872 146 7 14 chr6 17553805 17553949 -164861293 + AluJo SINE Alu 1 143 -169 483 113 0 0 chr6 17553949 17554011 -164861231 + AluY SINE Alu 188 249 -62 1155 187 14 5 chr6 17554011 17554225 -164861017 + AluJo SINE Alu 85 300 -12 885 94 0 0 chr6 17554469 17554586 -164860656 + MER30 DNA MER1_type 1 117 -113 320 321 109 64 chr6 17556180 17556279 -164858963 - L2 LINE L2 -1 3271 3178 2369 112 146 8 chr6 17556279 17556655 -164858587 + MSTA LTR MaLR 1 428 0 320 321 109 64 chr6 17556655 17556960 -164858282 - L2 LINE L2 -94 3178 2849 935 127 0 15 chr6 17558581 17558715 -164856527 - FLAM_C SINE Alu -11 132 1 363 285 81 32 chr6 17558733 17558856 -164856386 + L2 LINE L2 3144 3272 0 217 329 120 32 chr6 17559575 17559791 -164855451 - MIR SINE MIR -2 260 26 25 31 0 0 chr6 17560635 17560667 -164854575 + AT_rich Low_complexity Low_complexity 1 32 0 2433 74 0 7 chr6 17560798 17561108 -164854134 + AluSg SINE Alu 1 308 -2 284 68 0 23 chr6 17562418 17562462 -164852780 + (CA)n Simple_repeat Simple_repeat 2 44 0 2249 114 0 3 chr6 17562622 17562928 -164852314 + AluSx SINE Alu 1 305 -7 24 53 0 0 chr6 17562975 17563013 -164852229 + AT_rich Low_complexity Low_complexity 1 38 0 324 268 62 73 chr6 17563077 17563256 -164851986 + MER5B DNA MER1_type 1 177 -1 2229 114 3 0 chr6 17564242 17564539 -164850703 - AluSq SINE Alu -15 298 1 525 177 291 14 chr6 17564570 17564711 -164850531 + MER5A DNA MER1_type 1 180 -9 32 0 0 0 chr6 17564966 17564998 -164850244 + AT_rich Low_complexity Low_complexity 1 32 0 1344 190 88 4 chr6 17565005 17565268 -164849974 - AluJo SINE Alu -17 295 11 877 134 0 0 chr6 17565479 17565598 -164849644 + AluSg SINE Alu 1 119 -191 955 162 0 0 chr6 17566163 17566330 -164848912 - L1MA6 LINE L1 -4 6296 6130 669 216 162 18 chr6 17566651 17566777 -164848465 - MER63B DNA MER1_type -626 436 330 1994 76 8 8 chr6 17566777 17567041 -164848201 + AluSp SINE Alu 47 310 -3 669 216 162 18 chr6 17567041 17567136 -164848106 - MER63B DNA MER1_type -732 330 183 3264 171 17 17 chr6 17567139 17567479 -164847763 + Tigger3b DNA MER2_type 4 346 -2682 2326 92 3 13 chr6 17567479 17567784 -164847458 + AluSc SINE Alu 1 302 -7 3264 171 17 17 chr6 17567784 17568045 -164847197 + Tigger3b DNA MER2_type 345 605 -626 801 180 0 0 chr6 17568045 17568167 -164847075 + FLAM_C SINE Alu 3 124 -19 3562 117 31 75 chr6 17568168 17568834 -164846408 + Tigger3b DNA MER2_type 596 1232 0 771 259 31 0 chr6 17568836 17568998 -164846244 - MER63B DNA MER1_type -254 182 16 2022 107 26 0 chr6 17569005 17569276 -164845966 - AluSx SINE Alu -1 311 34 361 288 198 7 chr6 17569634 17569795 -164845447 - MIR SINE MIR -65 197 9 279 257 0 14 chr6 17570264 17570335 -164844907 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 893 180 40 92 chr6 17571369 17571597 -164843645 + MER20 DNA MER1_type 4 219 0 415 193 11 0 chr6 17571727 17571815 -164843427 + MER5A DNA MER1_type 18 106 -83 339 274 86 57 chr6 17571937 17572112 -164843130 + L2 LINE L2 258 437 -2877 182 322 144 34 chr6 17572386 17572504 -164842738 - L2 LINE L2 0 3272 3142 878 172 10 69 chr6 17573070 17573273 -164841969 + AluJb SINE Alu 14 204 -108 2353 100 53 42 chr6 17573577 17573936 -164841306 - THE1B LTR MaLR -1 363 1 342 0 0 0 chr6 17573989 17574027 -164841215 + (T)n Simple_repeat Simple_repeat 1 38 0 335 298 0 11 chr6 17574799 17574893 -164840349 + (CATATA)n Simple_repeat Simple_repeat 5 97 0 1946 167 0 0 chr6 17575109 17575397 -164839845 - AluJb SINE Alu -24 288 1 246 283 17 0 chr6 17576408 17576468 -164838774 + (CACG)n Simple_repeat Simple_repeat 1 61 0 5102 48 7 0 chr6 17578216 17578803 -164836439 + LTR10C LTR ERV1 1 591 0 182 294 20 0 chr6 17578869 17578920 -164836322 - MIR SINE MIR -75 133 82 193 254 8 185 chr6 17580357 17580487 -164834755 - MIR SINE MIR -122 140 34 860 194 26 7 chr6 17580502 17580657 -164834585 - FRAM SINE Alu -23 153 1 251 303 15 0 chr6 17580674 17580740 -164834502 + L2 LINE L2 3247 3313 0 2171 129 0 0 chr6 17581117 17581420 -164833822 + AluSx SINE Alu 1 303 -9 2280 118 0 3 chr6 17582589 17582902 -164832340 + AluSx SINE Alu 1 312 0 21 57 0 0 chr6 17583002 17583037 -164832205 + AT_rich Low_complexity Low_complexity 1 35 0 235 316 125 7 chr6 17583632 17583768 -164831474 + L2 LINE L2 3160 3311 -2 508 285 140 22 chr6 17584838 17585066 -164830176 - MIR SINE MIR -6 256 2 266 172 31 0 chr6 17585295 17585359 -164829883 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 21 0 0 0 chr6 17586609 17586630 -164828612 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 17586883 17586918 -164828324 + AT_rich Low_complexity Low_complexity 1 35 0 2247 103 3 3 chr6 17586964 17587276 -164827966 - AluSx SINE Alu 0 312 1 404 259 15 52 chr6 17588208 17588343 -164826899 + MIR SINE MIR 133 262 0 1564 186 20 30 chr6 17588780 17589081 -164826161 - AluJo SINE Alu -14 298 1 2334 96 0 0 chr6 17589181 17589484 -164825758 - AluY SINE Alu -8 303 1 210 268 113 14 chr6 17589851 17589922 -164825320 + L2 LINE L2 3236 3313 0 1985 30 0 30 chr6 17590307 17590541 -164824701 - L1PA3 LINE L1 -3 6152 5926 621 251 0 108 chr6 17590731 17590865 -164824377 + MIR SINE MIR 61 163 -99 773 202 0 0 chr6 17590865 17590994 -164824248 - FLAM_A SINE Alu -4 129 1 621 251 0 108 chr6 17590994 17591082 -164824160 + MIR SINE MIR 163 259 -3 46 19 0 0 chr6 17591171 17591224 -164824018 + AT_rich Low_complexity Low_complexity 1 53 0 237 33 0 0 chr6 17592572 17592602 -164822640 + (TC)n Simple_repeat Simple_repeat 1 30 0 279 54 0 0 chr6 17598331 17598368 -164816874 + (TG)n Simple_repeat Simple_repeat 1 37 0 183 162 0 0 chr6 17598368 17598405 -164816837 + GA-rich Low_complexity Low_complexity 2 38 0 1040 146 36 0 chr6 17598940 17599105 -164816137 - MER20 DNA MER1_type 0 219 49 2164 130 0 0 chr6 17599865 17600165 -164815077 - AluSq SINE Alu -13 300 1 596 64 13 0 chr6 17600190 17600268 -164814974 - MADE1 DNA Mariner -1 79 1 589 238 124 0 chr6 17600269 17600462 -164814780 - MIR SINE MIR -13 249 33 2232 109 30 0 chr6 17601161 17601464 -164813778 - AluSq SINE Alu -1 312 1 195 303 106 28 chr6 17601513 17601655 -164813587 - MIR SINE MIR -70 192 40 185 246 15 0 chr6 17602049 17602114 -164813128 + GA-rich Low_complexity Low_complexity 2 67 0 351 65 0 0 chr6 17602453 17602499 -164812743 + (TG)n Simple_repeat Simple_repeat 2 47 0 269 227 193 17 chr6 17603338 17603457 -164811785 - MIR SINE MIR -13 249 110 216 200 0 0 chr6 17604427 17604472 -164810770 + T-rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr6 17604879 17604909 -164810333 + AT_rich Low_complexity Low_complexity 1 30 0 342 259 94 62 chr6 17606430 17606654 -164808588 - L2 LINE L2 -5 3308 3078 935 310 54 26 chr6 17606684 17607333 -164807909 - L2 LINE L2 -711 2603 1937 575 254 39 22 chr6 17607535 17607636 -164807606 + MIR SINE MIR 78 185 -77 2318 114 0 0 chr6 17607636 17607944 -164807298 - AluSx SINE Alu -4 308 1 575 254 39 22 chr6 17607944 17608023 -164807219 + MIR SINE MIR 185 261 -1 975 270 274 8 chr6 17608041 17608985 -164806257 - L2 LINE L2 -7 3306 2103 1416 136 0 62 chr6 17609784 17610027 -164805215 - MER1B DNA MER1_type -69 228 1 230 73 24 0 chr6 17611083 17611124 -164804118 + (CGGGGG)n Simple_repeat Simple_repeat 6 47 0 2278 107 0 3 chr6 17611538 17611837 -164803405 + AluSq SINE Alu 1 298 -15 1029 127 27 7 chr6 17611846 17611996 -164803246 + AluJo SINE Alu 1 153 -159 980 166 0 0 chr6 17612259 17612416 -164802826 + AluJo SINE Alu 155 311 -1 311 320 66 53 chr6 17613542 17613786 -164801456 + HAL1b LINE L1 39 285 -1063 419 294 106 25 chr6 17613806 17614041 -164801201 + HAL1b LINE L1 346 599 -749 2026 151 0 0 chr6 17614476 17614781 -164800461 + AluSx SINE Alu 1 305 -7 1081 141 0 60 chr6 17614784 17614969 -164800273 + AluJo SINE Alu 139 312 0 28 0 0 0 chr6 17615116 17615144 -164800098 + AT_rich Low_complexity Low_complexity 1 28 0 2804 225 57 86 chr6 17615392 17615581 -164799661 + L1MC5 LINE L1 6415 6608 -1353 2538 60 0 0 chr6 17615581 17615879 -164799363 + AluY SINE Alu 1 298 -13 2804 225 57 86 chr6 17615879 17617259 -164797983 + L1MC5 LINE L1 6608 7914 -47 7254 21 0 0 chr6 17617269 17618087 -164797155 - L1PA3 LINE L1 0 6155 5338 361 295 50 14 chr6 17618207 17618346 -164796896 + MER5A DNA MER1_type 36 179 -10 34 24 0 0 chr6 17618941 17618982 -164796260 + AT_rich Low_complexity Low_complexity 1 41 0 1968 149 3 0 chr6 17618982 17619270 -164795972 - AluSx SINE Alu -23 289 1 879 160 0 0 chr6 17619272 17619403 -164795839 - AluJo/FLAM SINE Alu -181 131 1 407 292 34 52 chr6 17619754 17619987 -164795255 + L2 LINE L2 2698 2926 -388 423 143 0 23 chr6 17620189 17620322 -164794920 - L1MA4 LINE L1 -1 6299 6010 186 233 67 17 chr6 17620334 17620394 -164794848 + L2 LINE L2 3209 3271 -1 1745 163 17 7 chr6 17622932 17623220 -164792022 + AluSx SINE Alu 1 291 -21 2299 105 3 0 chr6 17623220 17623524 -164791718 + AluSp SINE Alu 1 305 -8 183 302 79 0 chr6 17624886 17624949 -164790293 + MIR SINE MIR 83 150 -58 2202 73 0 4 chr6 17624953 17625226 -164790016 + AluY SINE Alu 29 300 -11 222 91 0 0 chr6 17625324 17625357 -164789885 + (CAT)n Simple_repeat Simple_repeat 3 35 0 2063 101 64 10 chr6 17625605 17625901 -164789341 + AluSq SINE Alu 1 312 -1 486 238 9 0 chr6 17625914 17626019 -164789223 - L2 LINE L2 -10 3303 3198 2412 175 30 4 chr6 17626959 17627476 -164787766 + L1MB7 LINE L1 5283 5843 -359 241 186 0 0 chr6 17627476 17627519 -164787723 + LTR30 LTR ERV1 1 43 -679 742 172 142 12 chr6 17627519 17627688 -164787554 + LTR12 LTR ERV1 44 234 -480 274 176 88 15 chr6 17627728 17627796 -164787446 + LTR12 LTR ERV1 205 277 -437 319 232 30 20 chr6 17627796 17627895 -164787347 + LTR30 LTR ERV1 544 643 -79 707 134 22 28 chr6 17627895 17628041 -164787201 + LTR12 LTR ERV1 301 714 0 * 38823 110 9 10 chr6 17628041 17634364 -164780878 + HERV9 LTR ERV1 79 6478 -1921 10575 96 14 11 chr6 17634368 17635852 -164779390 + HERV9 LTR ERV1 6911 8399 0 268 163 0 0 chr6 17635852 17635895 -164779347 + LTR30 LTR ERV1 1 43 -679 746 189 98 76 chr6 17635895 17636179 -164779063 + LTR12 LTR ERV1 48 285 -429 342 147 69 98 chr6 17636180 17636282 -164778960 + LTR30 LTR ERV1 379 642 -80 569 114 0 0 chr6 17636282 17636361 -164778881 + LTR12 LTR ERV1 625 703 -11 1626 214 120 20 chr6 17636362 17636820 -164778422 + L1MC1 LINE L1 5830 6333 0 2040 119 22 0 chr6 17636927 17637230 -164778012 + AluSq SINE Alu 1 309 0 2328 96 3 10 chr6 17637781 17638094 -164777148 + AluY SINE Alu 1 311 0 323 267 43 74 chr6 17638282 17638608 -164776634 + L1ME4a LINE L1 5782 6097 -24 2428 84 0 13 chr6 17639924 17640235 -164775007 - AluY SINE Alu -4 307 1 184 244 0 0 chr6 17640835 17640876 -164774366 + L2 LINE L2 3273 3313 0 210 91 0 0 chr6 17640878 17640911 -164774331 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 2276 104 13 0 chr6 17641428 17641727 -164773515 + AluSq SINE Alu 1 303 -10 2480 174 50 6 chr6 17641751 17642246 -164772996 + L1MB3 LINE L1 5667 6183 0 714 162 0 9 chr6 17642474 17642585 -164772657 + FLAM_C SINE Alu 18 127 -16 279 0 0 0 chr6 17642938 17642969 -164772273 + (CA)n Simple_repeat Simple_repeat 2 32 0 276 149 0 0 chr6 17643411 17643458 -164771784 + (TG)n Simple_repeat Simple_repeat 1 47 0 312 300 132 41 chr6 17645713 17645933 -164769309 + L2 LINE L2 2715 2954 -360 733 224 178 63 chr6 17645941 17646352 -164768890 + MLT1H LTR MaLR 92 549 0 276 30 0 0 chr6 17646579 17646612 -164768630 + (CA)n Simple_repeat Simple_repeat 1 33 0 519 320 35 10 chr6 17647197 17647400 -164767842 - MIR SINE MIR -26 236 29 249 289 107 25 chr6 17647455 17647576 -164767666 - MIR SINE MIR -62 146 16 2197 94 0 11 chr6 17647618 17647895 -164767347 - AluSx SINE Alu -14 298 25 2207 121 0 10 chr6 17651617 17651924 -164763318 + AluSx SINE Alu 2 305 -7 554 245 101 79 chr6 17653975 17654253 -164760989 - L2 LINE L2 -3 3310 3027 242 323 120 53 chr6 17654713 17654846 -164760396 - MIR3 SINE MIR -40 168 27 1848 170 0 10 chr6 17655897 17656203 -164759039 + AluJb SINE Alu 1 303 -9 204 319 14 14 chr6 17656257 17656326 -164758916 - MIR SINE MIR -104 104 36 405 0 0 0 chr6 17656684 17656694 -164758548 + (TG)n Simple_repeat Simple_repeat 1 55 0 405 0 0 0 chr6 17656694 17656739 -164758503 + (TG)n Simple_repeat Simple_repeat 2 46 0 412 319 86 43 chr6 17659313 17659664 -164755578 - L2 LINE L2 -2 3311 2946 235 333 30 30 chr6 17661055 17661187 -164754055 - L3b LINE CR1 -236 1347 1216 1009 191 0 0 chr6 17661418 17661580 -164753662 + FRAM SINE Alu 1 162 -4 971 150 0 7 chr6 17661593 17661746 -164753496 - MER5A DNA MER1_type -36 153 2 201 154 0 0 chr6 17661881 17661920 -164753322 + A-rich Low_complexity Low_complexity 1 39 0 223 292 130 59 chr6 17661961 17662368 -164752874 + L2 LINE L2 1544 1979 -1335 664 324 73 32 chr6 17662466 17662837 -164752405 + MLT1K LTR MaLR 106 491 -97 1116 134 29 0 chr6 17662837 17663008 -164752234 - AluSg/x SINE Alu -5 307 132 2332 88 0 38 chr6 17663024 17663343 -164751899 - AluSq SINE Alu -6 307 1 2196 215 65 19 chr6 17663368 17663949 -164751293 + MLT1E3 LTR MaLR 1 599 -55 2079 29 0 13 chr6 17663949 17664187 -164751055 + L1PA3 LINE L1 5921 6155 0 360 152 61 0 chr6 17664219 17664285 -164750957 + MLT1E3 LTR MaLR 555 624 0 198 314 96 32 chr6 17664726 17665070 -164750172 + L2 LINE L2 2538 2902 -370 206 118 0 0 chr6 17665193 17665227 -164750015 + (T)n Simple_repeat Simple_repeat 1 34 0 230 306 107 33 chr6 17665307 17665428 -164749814 + L2 LINE L2 3141 3270 -2 21 0 0 0 chr6 17666230 17666251 -164748991 + AT_rich Low_complexity Low_complexity 1 21 0 2225 108 0 26 chr6 17667327 17667632 -164747610 + AluSx SINE Alu 1 297 -15 4924 169 17 26 chr6 17669722 17671010 -164744232 - L1MB5 LINE L1 -1 6173 4899 27 29 0 0 chr6 17671068 17671102 -164744140 + AT_rich Low_complexity Low_complexity 1 34 0 982 214 0 0 chr6 17671613 17671786 -164743456 - MER5B DNA MER1_type -5 173 1 415 308 33 33 chr6 17671937 17672119 -164743123 - MIR SINE MIR -62 200 19 198 0 0 0 chr6 17672485 17672507 -164742735 + (A)n Simple_repeat Simple_repeat 1 22 0 207 350 0 0 chr6 17672843 17672903 -164742339 + (CACG)n Simple_repeat Simple_repeat 4 63 0 * 212 250 0 0 chr6 17672860 17672904 -164742338 + (CA)n Simple_repeat Simple_repeat 1 44 0 5803 46 5 3 chr6 17673059 17673732 -164741510 - L1PA8 LINE L1 -8 6164 5491 195 158 0 26 chr6 17674640 17674678 -164740564 - MIR SINE MIR -10 252 216 286 351 91 7 chr6 17675313 17675467 -164739775 + L2 LINE L2 3106 3272 0 793 161 20 0 chr6 17675568 17675717 -164739525 - L1MB3 LINE L1 -7 6176 6025 225 94 0 0 chr6 17678675 17678707 -164736535 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 192 293 69 0 chr6 17680239 17680297 -164734945 + L2 LINE L2 2251 2312 -1002 3559 158 46 18 chr6 17680312 17680965 -164734277 + L1MB2 LINE L1 5447 6117 -54 270 357 45 0 chr6 17680966 17681078 -164734164 + L2 LINE L2 2546 2662 -652 374 178 224 0 chr6 17681082 17681189 -164734053 - L2 LINE L2 -164 3149 3019 197 220 153 147 chr6 17681938 17682088 -164733154 + MER5A DNA MER1_type 38 188 -1 1805 164 26 7 chr6 17682208 17682513 -164732729 + AluJb SINE Alu 1 311 -1 582 147 0 0 chr6 17683363 17683438 -164731804 + AluJ/FLAM SINE Alu 16 90 -222 2000 74 0 8 chr6 17686474 17686765 -164728477 + AluSc SINE Alu 28 316 0 470 246 65 116 chr6 17688149 17688442 -164726800 + MLT1J2 LTR MaLR 132 450 0 510 281 44 7 chr6 17689074 17689209 -164726033 + MIR SINE MIR 77 216 -46 22 0 0 0 chr6 17689210 17689232 -164726010 + AT_rich Low_complexity Low_complexity 1 22 0 200 397 147 0 chr6 17689275 17689391 -164725851 - L2 LINE L2 -18 3254 3122 282 368 0 0 chr6 17689422 17689539 -164725703 + (CA)n Simple_repeat Simple_repeat 2 118 0 572 265 139 25 chr6 17689692 17689930 -164725312 - L2 LINE L2 -1 3312 3048 219 36 0 0 chr6 17692871 17692899 -164722343 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2373 62 20 0 chr6 17693028 17693333 -164721909 + AluY SINE Alu 1 311 0 299 340 49 6 chr6 17693826 17693988 -164721254 + MIR3 SINE MIR 33 201 -7 22 35 0 0 chr6 17694444 17694473 -164720769 + AT_rich Low_complexity Low_complexity 1 29 0 182 255 85 0 chr6 17694525 17694572 -164720670 + L2 LINE L2 3208 3258 -14 902 129 0 0 chr6 17694824 17694948 -164720294 - FLAM_C SINE Alu -19 124 1 349 283 50 0 chr6 17695008 17695128 -164720114 - MIR SINE MIR -118 144 19 781 169 44 62 chr6 17695155 17695315 -164719927 - AluJo SINE Alu -70 242 86 404 307 102 0 chr6 17696225 17696362 -164718880 + MIR SINE MIR 22 172 -90 1984 116 4 0 chr6 17696517 17696776 -164718466 + AluSx SINE Alu 1 260 -52 215 79 26 0 chr6 17696776 17696814 -164718428 + (CAA)n Simple_repeat Simple_repeat 1 39 0 4932 93 31 4 chr6 17696882 17697558 -164717684 + L1MA1 LINE L1 5609 6302 0 269 159 16 0 chr6 17697757 17697820 -164717422 + (TA)n Simple_repeat Simple_repeat 1 64 0 2449 83 0 0 chr6 17698229 17698531 -164716711 + AluSq SINE Alu 1 302 -11 2247 112 0 0 chr6 17699766 17700070 -164715172 + AluSx SINE Alu 2 305 -7 485 207 111 0 chr6 17700401 17700536 -164714706 - MIR SINE MIR -56 206 57 2216 113 7 0 chr6 17700643 17700936 -164714306 + AluSx SINE Alu 1 295 -17 191 401 35 21 chr6 17701701 17701843 -164713399 + L3 LINE CR1 672 815 -762 1271 125 15 10 chr6 17702320 17702520 -164712722 + L1PA13 LINE L1 5963 6163 0 2346 103 0 0 chr6 17703087 17703389 -164711853 + AluSq SINE Alu 1 302 -11 1095 224 23 0 chr6 17703693 17703912 -164711330 - MER58A DNA MER1_type 0 224 1 3263 135 19 29 chr6 17704259 17704973 -164710269 + L1MB3 LINE L1 5289 6166 0 615 254 75 30 chr6 17706197 17706398 -164708844 + MER63A DNA MER1_type 1 210 0 1858 162 32 60 chr6 17706983 17707384 -164707858 + L1MC3 LINE L1 6708 7097 -688 359 243 47 28 chr6 17707384 17707491 -164707751 + MLT1F1 LTR MaLR 35 143 -424 332 185 241 19 chr6 17707508 17707616 -164707626 + L1MC3 LINE L1 7201 7332 -453 * 361 177 0 0 chr6 17707612 17707674 -164707568 - L1MC4 LINE L1 -473 7569 7508 1539 145 31 55 chr6 17707674 17708002 -164707240 + AluJb SINE Alu 1 321 0 414 254 35 0 chr6 17708129 17708243 -164706999 + L1MC4 LINE L1 7924 8041 -1 2164 131 0 3 chr6 17709169 17709483 -164705759 + AluSq SINE Alu 1 313 0 1625 114 0 0 chr6 17709567 17709777 -164705465 + AluSq SINE Alu 1 210 -103 321 189 283 9 chr6 17709979 17710085 -164705157 + MIR SINE MIR 86 220 -42 2398 30 7 0 chr6 17710180 17710450 -164704792 - L1PA4 LINE L1 0 6155 5884 2094 110 7 0 chr6 17710450 17710732 -164704510 - AluSx SINE Alu -28 284 1 816 238 54 18 chr6 17711912 17711971 -164703271 - MIR SINE MIR -3 259 204 2221 84 7 3 chr6 17711971 17712256 -164702986 - AluSx SINE Alu -24 288 3 816 238 54 18 chr6 17712256 17712419 -164702823 - MIR SINE MIR -58 204 29 233 323 24 65 chr6 17712624 17712748 -164702494 - MIR SINE MIR -63 145 79 21 0 0 0 chr6 17712781 17712802 -164702440 + AT_rich Low_complexity Low_complexity 1 21 0 441 344 89 0 chr6 17713480 17713637 -164701605 - MIR3 SINE MIR -11 197 27 2075 144 9 35 chr6 17714426 17714774 -164700468 - MER44D DNA MER2_type 0 609 1 21 36 0 0 chr6 17715148 17715176 -164700066 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 17715379 17715400 -164699842 + (A)n Simple_repeat Simple_repeat 1 21 0 366 243 58 19 chr6 17715793 17715896 -164699346 + MIR3 SINE MIR 78 184 -24 200 267 185 37 chr6 17718045 17718180 -164697062 - MIR3 SINE MIR -32 176 22 236 227 0 121 chr6 17718269 17718335 -164696907 + MIR SINE MIR 18 75 -133 1835 205 65 23 chr6 17719242 17719685 -164695557 - MLT1C LTR MaLR 0 467 6 7408 143 32 18 chr6 17719707 17720391 -164694851 - Tigger3b DNA MER2_type -1797 1231 521 2026 116 10 10 chr6 17720391 17720706 -164694536 + AluSx SINE Alu 4 312 0 7408 143 32 18 chr6 17720706 17721235 -164694007 - Tigger3b DNA MER2_type -2507 521 1 2228 106 7 0 chr6 17721362 17721664 -164693578 + AluSp SINE Alu 1 304 -9 1431 136 4 26 chr6 17721671 17721899 -164693343 + L1PA8A LINE L1 5909 6131 0 416 293 23 2 chr6 17722330 17722486 -164692756 - MIR SINE MIR -63 145 17 300 269 138 28 chr6 17722631 17722776 -164692466 - MIR SINE MIR -70 192 32 206 341 0 12 chr6 17723420 17723505 -164691737 + L2 LINE L2 2228 2311 -1003 398 308 17 0 chr6 17725259 17725379 -164689863 + L2 LINE L2 3190 3311 -2 2294 94 0 7 chr6 17726202 17726500 -164688742 - AluSq SINE Alu -17 296 1 1086 98 0 0 chr6 17726504 17726637 -164688605 - AluSq/x SINE Alu -180 133 1 305 171 29 29 chr6 17727093 17727163 -164688079 - MIR SINE MIR -120 142 73 503 303 154 34 chr6 17728414 17728788 -164686454 + L1MC4a LINE L1 4037 4365 -1781 2076 133 3 10 chr6 17728788 17729097 -164686145 + AluSq SINE Alu 1 307 -6 503 303 154 34 chr6 17729097 17729625 -164685617 + L1MC4a LINE L1 4365 5047 -1099 * 1283 195 16 12 chr6 17729622 17729878 -164685364 + L1MB7 LINE L1 5853 6109 -75 1095 161 6 0 chr6 17729902 17730076 -164685166 + FRAM SINE Alu 1 175 -1 228 150 0 117 chr6 17730076 17730116 -164685126 + L1MB7 LINE L1 6132 6164 -20 1799 156 20 13 chr6 17730116 17730417 -164684825 - AluJo SINE Alu -9 303 1 228 150 0 117 chr6 17730417 17730436 -164684806 + L1MB7 LINE L1 6164 6184 0 1952 251 46 34 chr6 17730675 17731393 -164683849 + L1MC4a LINE L1 5284 6019 -102 23 33 0 0 chr6 17731598 17731628 -164683614 + AT_rich Low_complexity Low_complexity 1 30 0 1742 110 16 0 chr6 17731960 17732206 -164683036 + AluSq SINE Alu 64 313 0 2062 139 3 0 chr6 17733846 17734147 -164681095 + AluJb SINE Alu 9 310 -2 668 169 0 7 chr6 17734166 17734302 -164680940 + GA-rich Low_complexity Low_complexity 1 135 0 328 273 58 50 chr6 17735762 17735901 -164679341 + MIR SINE MIR 23 162 -100 2622 160 13 17 chr6 17736113 17736589 -164678653 + L1MB7 LINE L1 5653 6126 -58 195 100 0 0 chr6 17737301 17737331 -164677911 + (TAA)n Simple_repeat Simple_repeat 2 31 0 800 172 55 43 chr6 17738186 17738293 -164676949 - AluJo SINE Alu -77 235 131 225 0 0 0 chr6 17738293 17738318 -164676924 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2184 85 0 11 chr6 17738318 17738636 -164676606 + AluY SINE Alu 1 315 0 800 172 55 43 chr6 17738636 17738689 -164676553 - AluJo SINE Alu -180 132 71 2252 86 0 35 chr6 17740980 17741293 -164673949 + AluSx SINE Alu 1 302 -10 858 273 76 32 chr6 17741429 17741839 -164673403 + MLT1J2 LTR MaLR 1 428 -22 1075 184 0 0 chr6 17743233 17743407 -164671835 - FRAM SINE Alu -7 169 1 1805 173 0 7 chr6 17743425 17743709 -164671533 - AluJo SINE Alu -30 282 1 1845 110 7 46 chr6 17745770 17745948 -164669294 - AluSx SINE Alu -7 305 122 198 0 0 0 chr6 17745948 17745970 -164669272 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2237 74 0 11 chr6 17745970 17746255 -164668987 - AluSx SINE Alu -30 282 1 1845 110 7 46 chr6 17746255 17746357 -164668885 - AluSx SINE Alu -188 124 35 2394 230 92 70 chr6 17746366 17747253 -164667989 - L1MC4a LINE L1 -3 7805 6934 261 377 57 29 chr6 17747389 17747564 -164667678 - L2 LINE L2 -45 3227 3048 2395 107 0 0 chr6 17748988 17749298 -164665944 + AluSx SINE Alu 1 310 -2 21 57 0 0 chr6 17749415 17749450 -164665792 + AT_rich Low_complexity Low_complexity 1 35 0 617 315 25 10 chr6 17749587 17749790 -164665452 - MIR SINE MIR -50 212 7 214 304 98 11 chr6 17751137 17751229 -164664013 - MIR3 SINE MIR -21 187 88 232 162 0 0 chr6 17751495 17751532 -164663710 - L2 LINE L2 -11 3302 3266 * 241 193 121 60 chr6 17751500 17751583 -164663659 - MIR SINE MIR -10 252 165 461 70 0 14 chr6 17752942 17753013 -164662229 + (TG)n Simple_repeat Simple_repeat 1 70 0 309 333 14 14 chr6 17754022 17754163 -164661079 + L2 LINE L2 3173 3313 0 442 233 212 8 chr6 17755743 17755903 -164659339 - MIR SINE MIR -42 220 31 312 323 0 0 chr6 17755966 17756059 -164659183 - L1MC4 LINE L1 -1335 6707 6615 23 0 0 0 chr6 17756110 17756133 -164659109 + AT_rich Low_complexity Low_complexity 1 23 0 606 306 82 69 chr6 17756401 17756699 -164658543 + L1ME4a LINE L1 5426 5736 -385 1849 158 0 44 chr6 17756699 17757016 -164658226 + AluJb SINE Alu 3 305 -7 606 306 82 69 chr6 17757016 17757168 -164658074 + L1ME4a LINE L1 5736 5884 -237 306 148 0 0 chr6 17757760 17757814 -164657428 + (CA)n Simple_repeat Simple_repeat 1 54 0 336 316 52 29 chr6 17758205 17758341 -164656901 - MIR SINE MIR -4 258 120 2253 101 3 0 chr6 17758489 17758776 -164656466 + AluSc SINE Alu 5 292 -17 216 301 48 12 chr6 17759314 17759397 -164655845 + L2 LINE L2 2924 3009 -263 2179 110 7 0 chr6 17759397 17759697 -164655545 + AluSq SINE Alu 1 302 -11 364 357 36 89 chr6 17760074 17760522 -164654720 + L2 LINE L2 2849 3272 0 281 118 20 0 chr6 17760527 17760578 -164654664 + GA-rich Low_complexity Low_complexity 3 54 0 224 169 52 0 chr6 17761134 17761211 -164654031 + (TA)n Simple_repeat Simple_repeat 2 82 0 498 280 40 0 chr6 17761323 17761448 -164653794 + MIR SINE MIR 129 258 -4 1791 159 0 26 chr6 17762415 17762583 -164652659 - AluJo SINE Alu -11 301 143 1902 100 79 7 chr6 17762583 17762863 -164652379 - AluSp SINE Alu -9 304 5 1791 159 0 26 chr6 17762863 17763003 -164652239 - AluJo SINE Alu -169 143 1 198 275 175 0 chr6 17763274 17763354 -164651888 + L2 LINE L2 2942 3035 -237 283 277 100 54 chr6 17763401 17763531 -164651711 + L2 LINE L2 3137 3272 0 712 153 27 0 chr6 17764406 17764517 -164650725 - LTR12 LTR ERV1 -234 480 367 253 270 14 0 chr6 17764523 17764597 -164650645 - LTR30 LTR ERV1 -95 627 553 912 156 50 105 chr6 17764626 17764911 -164650331 - LTR12 LTR ERV1 -435 1800 55 271 211 0 0 chr6 17764911 17764963 -164650279 - LTR30 LTR ERV1 -670 52 1 732 204 22 88 chr6 17765331 17765557 -164649685 - L1ME3A LINE L1 -174 5996 5786 306 194 0 0 chr6 17765566 17765628 -164649614 + (TA)n Simple_repeat Simple_repeat 1 62 0 324 234 171 9 chr6 17766012 17766123 -164649119 - L1ME3A LINE L1 -496 5625 5528 2458 81 0 0 chr6 17766220 17766527 -164648715 - AluSc SINE Alu -2 307 1 1877 135 24 7 chr6 17767744 17768041 -164647201 - AluJo SINE Alu -10 302 1 2094 120 0 7 chr6 17769187 17769487 -164645755 - AluSx SINE Alu -14 298 1 760 165 23 28 chr6 17769720 17769896 -164645346 + L1MA7 LINE L1 6117 6291 0 322 352 56 0 chr6 17770168 17770310 -164644932 + MIR SINE MIR 30 179 -83 2281 105 0 0 chr6 17771177 17771471 -164643771 + AluSc SINE Alu 1 294 -15 2337 81 0 10 chr6 17773315 17773612 -164641630 + AluY SINE Alu 1 294 -17 2237 104 0 3 chr6 17774199 17774496 -164640746 - AluSc SINE Alu -13 296 1 185 295 98 0 chr6 17774628 17774689 -164640553 + MIR SINE MIR 84 150 -112 192 77 0 0 chr6 17774690 17774716 -164640526 + (TATAA)n Simple_repeat Simple_repeat 2 27 0 1491 195 6 35 chr6 17775956 17776274 -164638968 + AluJo SINE Alu 1 309 -3 1488 190 45 39 chr6 17776322 17776632 -164638610 - AluJo SINE Alu 0 312 1 482 260 20 41 chr6 17777018 17777164 -164638078 - MIR3 SINE MIR -9 199 57 383 295 21 74 chr6 17777505 17777592 -164637650 + MIR SINE MIR 73 146 -116 1740 145 6 68 chr6 17777592 17777916 -164637326 + AluJo SINE Alu 1 304 -8 383 295 21 74 chr6 17777916 17778018 -164637224 + MIR SINE MIR 146 252 -10 233 75 25 0 chr6 17778226 17778266 -164636976 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 2306 102 0 0 chr6 17778269 17778574 -164636668 - AluY SINE Alu -6 305 1 189 0 0 0 chr6 17778614 17778635 -164636607 + (TG)n Simple_repeat Simple_repeat 2 22 0 2101 95 50 3 chr6 17778637 17778920 -164636322 - AluSq SINE Alu -17 296 1 578 253 13 27 chr6 17778936 17779086 -164636156 + MIR3 SINE MIR 57 204 -4 341 293 69 34 chr6 17781789 17781992 -164633250 + HAL1b LINE L1 71 242 -1106 270 0 0 0 chr6 17782001 17782031 -164633211 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 32 0 0 0 chr6 17782068 17782100 -164633142 + AT_rich Low_complexity Low_complexity 1 32 0 1466 181 7 27 chr6 17782488 17782786 -164632456 + AluJo SINE Alu 1 292 -20 457 273 151 62 chr6 17783468 17783596 -164631646 + L1MB3 LINE L1 2445 2560 -3586 2559 68 0 0 chr6 17783596 17783905 -164631337 - AluY SINE Alu -2 309 1 457 273 151 62 chr6 17783905 17784326 -164630916 + L1MB3 LINE L1 2560 3043 -3103 2241 98 3 7 chr6 17784360 17784655 -164630587 + AluSc SINE Alu 5 298 -11 2903 10 0 0 chr6 17784730 17785042 -164630200 + AluYb8 SINE Alu 1 312 -6 28 61 0 0 chr6 17785093 17785142 -164630100 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr6 17785231 17785259 -164629983 + AT_rich Low_complexity Low_complexity 1 28 0 1806 149 14 20 chr6 17785291 17785587 -164629655 + AluJo SINE Alu 1 294 -18 2085 117 0 7 chr6 17786387 17786707 -164628535 + AluSx SINE Alu 1 318 0 306 303 106 61 chr6 17787424 17787498 -164627744 + L1MB3 LINE L1 3998 4067 -2079 2149 118 3 7 chr6 17787498 17787795 -164627447 + AluSx SINE Alu 1 296 -16 306 303 106 61 chr6 17787795 17787984 -164627258 + L1MB3 LINE L1 4067 4273 -1873 2115 135 0 0 chr6 17788004 17788292 -164626950 + AluSx SINE Alu 1 288 -24 255 95 88 14 chr6 17788292 17788439 -164626803 + (TA)n Simple_repeat Simple_repeat 1 158 0 1791 155 49 18 chr6 17788547 17788876 -164626366 + MER44D DNA MER2_type 1 609 0 21 0 0 0 chr6 17789068 17789089 -164626153 + AT_rich Low_complexity Low_complexity 1 21 0 2007 56 0 12 chr6 17789284 17789533 -164625709 + AluY SINE Alu 56 301 -10 23 0 0 0 chr6 17789799 17789822 -164625420 + AT_rich Low_complexity Low_complexity 1 23 0 3019 63 6 0 chr6 17789822 17790188 -164625054 + L1PA8 LINE L1 5805 6172 0 2215 86 35 3 chr6 17790195 17790485 -164624757 + AluSx SINE Alu 1 299 -13 610 277 106 66 chr6 17790686 17791156 -164624086 + L1MB3 LINE L1 5293 5781 -340 792 221 35 87 chr6 17791461 17791509 -164623733 + MIR SINE MIR 22 71 -191 801 163 7 22 chr6 17791509 17791644 -164623598 + FLAM_A SINE Alu 1 133 0 792 221 35 87 chr6 17791644 17791849 -164623393 + MIR SINE MIR 71 262 0 183 42 0 0 chr6 17791983 17792007 -164623235 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 0 0 0 chr6 17792009 17792048 -164623194 + (CA)n Simple_repeat Simple_repeat 2 40 0 248 228 10 50 chr6 17792111 17792212 -164623030 - L1ME LINE L1 -385 5736 5640 2086 92 41 10 chr6 17793186 17793478 -164621764 + AluSx SINE Alu 1 301 -11 511 303 17 28 chr6 17793577 17793755 -164621487 + MIR SINE MIR 2 177 -85 248 289 180 39 chr6 17793802 17794059 -164621183 - L2 LINE L2 -25 3288 2884 221 160 0 20 chr6 17794092 17794142 -164621100 + (TGG)n Simple_repeat Simple_repeat 1 49 0 745 311 36 45 chr6 17794661 17795082 -164620160 - L1ME3A LINE L1 -226 5944 5528 246 154 339 0 chr6 17795555 17795620 -164619622 + L1MB7 LINE L1 6091 6177 -7 1450 172 43 36 chr6 17795632 17795815 -164619427 + L1MB3 LINE L1 5871 6058 -125 2258 125 0 0 chr6 17795815 17796119 -164619123 + AluSq SINE Alu 1 304 -9 1450 172 43 36 chr6 17796119 17796238 -164619004 + L1MB3 LINE L1 6058 6175 -8 350 294 0 0 chr6 17797316 17797401 -164617841 - L2 LINE L2 0 3272 3188 406 323 24 8 chr6 17797783 17797907 -164617335 + L2 LINE L2 3134 3259 -13 2138 112 0 31 chr6 17798021 17798342 -164616900 - AluSx SINE Alu -1 311 1 2023 194 18 26 chr6 17798391 17798782 -164616460 + MLT1B LTR MaLR 1 388 -2 303 251 150 70 chr6 17798839 17799026 -164616216 + MIR3 SINE MIR 3 204 -4 2312 102 0 0 chr6 17799193 17799497 -164615745 + AluSg SINE Alu 1 304 -6 6061 96 8 13 chr6 17800209 17801065 -164614177 - L1PA14 LINE L1 -3 6158 5307 1817 109 4 16 chr6 17801091 17801348 -164613894 - AluSg SINE Alu -29 281 28 21 0 0 0 chr6 17801358 17801379 -164613863 + AT_rich Low_complexity Low_complexity 1 21 0 2363 88 0 3 chr6 17801380 17801677 -164613565 + AluSq SINE Alu 1 296 -17 406 300 198 12 chr6 17802796 17803011 -164612231 - MIR SINE MIR 0 262 12 266 306 50 78 chr6 17803641 17803860 -164611382 + MIR SINE MIR 12 224 -38 1867 116 83 7 chr6 17804495 17804771 -164610471 + AluSp SINE Alu 14 310 -3 192 40 0 0 chr6 17805040 17805065 -164610177 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 455 188 69 10 chr6 17806053 17806154 -164609088 + MIR SINE MIR 82 188 -74 1467 174 105 22 chr6 17806160 17806522 -164608720 - L1MB7 LINE L1 0 6184 5793 3504 102 16 8 chr6 17806716 17807216 -164608026 + MER1A DNA MER1_type 1 529 0 443 267 34 48 chr6 17807913 17808059 -164607183 - MIR3 SINE MIR -15 193 50 5635 49 1 0 chr6 17808602 17809288 -164605954 + L1PA5 LINE L1 5501 6154 0 482 207 10 173 chr6 17809809 17809909 -164605333 - MER69A DNA AcHobo -2349 177 127 1829 163 3 7 chr6 17809909 17810215 -164605027 + AluJb SINE Alu 1 305 -7 482 207 10 173 chr6 17810215 17810322 -164604920 - MER69A DNA AcHobo -2399 127 4 258 231 0 0 chr6 17810674 17810726 -164604516 + LTR30 LTR ERV1 1 52 -670 1320 126 112 5 chr6 17810726 17810940 -164604302 + LTR12 LTR ERV1 53 289 -425 323 174 35 23 chr6 17810940 17811026 -164604216 + LTR30 LTR ERV1 556 642 -80 732 129 0 0 chr6 17811028 17811129 -164604113 + LTR12 LTR ERV1 614 714 0 1772 91 4 4 chr6 17811129 17811360 -164603882 - AluSp SINE Alu -82 231 1 14958 118 42 21 chr6 17811757 17812148 -164603094 + Tigger1 DNA MER2_type 1 382 -2036 2426 86 0 0 chr6 17812148 17812451 -164602791 + AluY SINE Alu 1 303 -8 14958 118 42 21 chr6 17812451 17813852 -164601390 + Tigger1 DNA MER2_type 382 1860 -558 2072 93 3 31 chr6 17813852 17814170 -164601072 + AluY SINE Alu 1 310 0 14958 118 42 21 chr6 17814170 17814733 -164600509 + Tigger1 DNA MER2_type 1860 2409 -9 1980 97 68 4 chr6 17814736 17815015 -164600227 + AluSq SINE Alu 3 299 -14 2082 134 7 3 chr6 17815093 17815400 -164599842 + AluJb SINE Alu 1 308 -4 1647 117 50 39 chr6 17815739 17815988 -164599254 + L1MB4 LINE L1 5884 6138 -42 2336 73 24 0 chr6 17815988 17816277 -164598965 + AluSc SINE Alu 1 296 -13 1647 117 50 39 chr6 17816277 17816308 -164598934 + L1MB4 LINE L1 6138 6167 -13 216 0 0 0 chr6 17816310 17816334 -164598908 + (TG)n Simple_repeat Simple_repeat 2 25 0 27 29 0 0 chr6 17816346 17816380 -164598862 + AT_rich Low_complexity Low_complexity 1 34 0 1372 208 10 20 chr6 17817684 17817982 -164597260 + AluJo SINE Alu 1 295 -17 186 263 53 0 chr6 17818040 17818097 -164597145 + L2 LINE L2 2715 2774 -540 251 284 156 0 chr6 17818112 17818221 -164597021 + MIR SINE MIR 124 249 -13 222 319 83 58 chr6 17818262 17818538 -164596704 + L2 LINE L2 2825 3107 -165 219 36 0 0 chr6 17818731 17818759 -164596483 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2183 104 3 0 chr6 17818761 17819048 -164596194 - AluSg SINE Alu -22 288 1 567 291 27 0 chr6 17819052 17819200 -164596042 - MIR SINE MIR -110 152 1 1282 160 88 0 chr6 17819294 17819532 -164595710 + L1MA9 LINE L1 6054 6312 0 2192 102 3 0 chr6 17819540 17819847 -164595395 + AluSq SINE Alu 1 308 0 185 154 26 0 chr6 17820689 17820728 -164594514 + (TA)n Simple_repeat Simple_repeat 1 40 0 676 250 103 0 chr6 17821687 17821843 -164593399 - AluJb SINE Alu -4 308 137 2424 152 0 46 chr6 17822329 17822744 -164592498 + MER57A LTR ERV1 8 403 0 200 383 25 0 chr6 17822858 17822978 -164592264 - L2 LINE L2 -642 2672 2550 2221 108 0 3 chr6 17823009 17823304 -164591938 + AluSg SINE Alu 1 294 -16 376 234 126 51 chr6 17825687 17825862 -164589380 - MER5A DNA MER1_type -1 188 1 2244 116 7 3 chr6 17826010 17826313 -164588929 + AluSc SINE Alu 1 304 -5 1194 137 0 6 chr6 17826985 17827160 -164588082 + AluJo SINE Alu 1 174 -138 309 136 0 68 chr6 17827379 17827480 -164587762 + AluJ/FRAM SINE Alu 228 324 0 2366 96 0 7 chr6 17827554 17827857 -164587385 + AluSc SINE Alu 1 301 -8 2250 145 8 39 chr6 17828450 17828728 -164586514 - MER7A DNA MER2_type -2693 345 81 2514 62 0 13 chr6 17828728 17829033 -164586209 - AluY SINE Alu -10 301 1 2250 145 8 39 chr6 17829033 17829112 -164586130 - MER7A DNA MER2_type -2957 81 1 191 341 93 31 chr6 17831268 17831397 -164583845 - MIR3 SINE MIR -25 183 47 2322 115 0 0 chr6 17832579 17832883 -164582359 - AluSg SINE Alu -6 304 1 274 263 93 25 chr6 17832885 17833003 -164582239 + L1 LINE L1 4887 5012 -1134 31 58 0 0 chr6 17833033 17833085 -164582157 + AT_rich Low_complexity Low_complexity 1 52 0 529 294 55 12 chr6 17833086 17833249 -164581993 - L2 LINE L2 -503 2811 2642 1522 239 88 53 chr6 17833257 17833781 -164581461 + MLT1F LTR MaLR 1 542 0 507 301 38 0 chr6 17833823 17833956 -164581286 - MIR SINE MIR -122 140 3 2365 100 0 3 chr6 17834079 17834380 -164580862 - AluSq SINE Alu -13 300 1 2323 90 13 0 chr6 17834716 17835015 -164580227 - AluSq SINE Alu -10 303 1 937 178 0 0 chr6 17835385 17835575 -164579667 - FRAM SINE Alu 0 190 1 287 73 24 0 chr6 17836477 17836518 -164578724 + Charlie1 DNA MER1_type 2687 2728 -33 2972 174 76 20 chr6 17836521 17837292 -164577950 - Charlie1 DNA MER1_type -32 2729 41 4227 135 20 0 chr6 17837599 17838244 -164576998 - L1MA4 LINE L1 -1 6299 5642 1964 146 17 0 chr6 17838249 17838550 -164576692 - AluSc SINE Alu -3 306 1 283 346 15 15 chr6 17838816 17838946 -164576296 - MIR SINE MIR -49 213 84 1716 40 30 0 chr6 17839946 17840146 -164575096 - L1PA4 LINE L1 0 6155 5950 508 119 48 24 chr6 17840515 17840651 -164574591 - FLAM_A SINE Alu 0 142 35 1184 91 0 0 chr6 17841418 17841572 -164573670 - L1PA8 LINE L1 0 6172 6019 183 362 21 0 chr6 17842987 17843034 -164572208 - L2 LINE L2 -98 3174 3127 198 103 0 0 chr6 17843042 17843071 -164572171 + (T)n Simple_repeat Simple_repeat 1 29 0 188 138 0 0 chr6 17843260 17843289 -164571953 - L2 LINE L2 -16 3297 3269 347 269 71 43 chr6 17843727 17843868 -164571374 + MER5A DNA MER1_type 1 145 -44 1964 198 68 60 chr6 17844176 17844484 -164570758 + MLT1D LTR MaLR 1 316 -189 1924 131 22 26 chr6 17844484 17844797 -164570445 + AluSx SINE Alu 1 312 0 1964 198 68 60 chr6 17844797 17844989 -164570253 + MLT1D LTR MaLR 316 505 0 498 171 0 34 chr6 17845277 17845365 -164569877 - MER20 DNA MER1_type 0 219 135 207 0 0 0 chr6 17845395 17845418 -164569824 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 814 189 0 0 chr6 17845430 17845562 -164569680 - FRAM SINE Alu -44 132 1 823 153 13 33 chr6 17845564 17845714 -164569528 - MER20 DNA MER1_type -72 147 1 2257 83 3 52 chr6 17846079 17846403 -164568839 - AluSg SINE Alu -2 308 1 2163 125 0 25 chr6 17847345 17847664 -164567578 + AluSx SINE Alu 1 311 -1 314 184 276 0 chr6 17848245 17848343 -164566899 - L2 LINE L2 -21 3292 3168 201 371 121 17 chr6 17848798 17848914 -164566328 - L2 LINE L2 -24 3248 3121 2314 90 3 3 chr6 17850500 17850800 -164564442 + AluSq SINE Alu 1 300 -13 1122 143 0 0 chr6 17850817 17851159 -164564083 + (TGGA)n Simple_repeat Simple_repeat 1 342 0 243 262 16 0 chr6 17851166 17851227 -164564015 + GA-rich Low_complexity Low_complexity 3 64 0 26 50 0 0 chr6 17851685 17851725 -164563517 + AT_rich Low_complexity Low_complexity 1 40 0 2375 92 0 0 chr6 17853950 17854243 -164560999 - AluSx SINE Alu -19 293 1 271 78 7 0 chr6 17856218 17856274 -164558968 - Alu SINE Alu -28 272 238 331 252 209 0 chr6 17856289 17856404 -164558838 - MIR3 SINE MIR -46 162 24 306 125 0 0 chr6 17856767 17856815 -164558427 + (CA)n Simple_repeat Simple_repeat 2 49 0 192 200 22 22 chr6 17858547 17858592 -164556650 - L2 LINE L2 -11 3261 3217 342 0 0 0 chr6 17859404 17859442 -164555800 + (CA)n Simple_repeat Simple_repeat 2 39 0 338 245 14 14 chr6 17860676 17860819 -164554423 + (TG)n Simple_repeat Simple_repeat 2 144 0 32 0 0 0 chr6 17861027 17861059 -164554183 + AT_rich Low_complexity Low_complexity 1 32 0 1007 169 12 0 chr6 17861067 17861239 -164554003 - AluJo SINE Alu -19 293 120 640 120 0 0 chr6 17861258 17861358 -164553884 - FLAM_C SINE Alu 0 143 44 1140 169 14 59 chr6 17861365 17861655 -164553587 - L1MA7 LINE L1 -3 6288 6012 486 212 159 0 chr6 17861839 17861952 -164553290 - FLAM_A SINE Alu -2 131 1 300 279 39 54 chr6 17862394 17862523 -164552719 - MIR3 SINE MIR -4 204 78 356 284 61 20 chr6 17862938 17863086 -164552156 + L2 LINE L2 3160 3313 0 870 192 106 10 chr6 17863510 17863708 -164551534 + MLT1A1 LTR MaLR 1 217 -148 2125 78 30 0 chr6 17863728 17863998 -164551244 + AluSx SINE Alu 1 278 -34 21 0 0 0 chr6 17864354 17864375 -164550867 + AT_rich Low_complexity Low_complexity 1 21 0 384 253 165 29 chr6 17864450 17864620 -164550622 - MIR SINE MIR -38 224 32 671 183 82 105 chr6 17864717 17864936 -164550306 + MIR SINE MIR 5 218 -44 379 276 0 38 chr6 17864986 17865091 -164550151 + MIR SINE MIR 48 148 -114 1546 101 4 21 chr6 17865986 17866223 -164549019 - AluSc SINE Alu -1 308 76 736 301 30 33 chr6 17866407 17866709 -164548533 - L3 LINE CR1 -14 1563 1263 1096 168 20 45 chr6 17867508 17867710 -164547532 + AluJo SINE Alu 86 282 -30 258 32 0 0 chr6 17867725 17867756 -164547486 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr6 17870397 17870417 -164544825 + (A)n Simple_repeat Simple_repeat 1 20 0 425 351 46 6 chr6 17870452 17870626 -164544616 + MIR3 SINE MIR 19 199 -9 223 319 100 62 chr6 17873031 17873168 -164542074 + MIR3 SINE MIR 43 188 -20 10821 31 7 0 chr6 17873168 17875237 -164540005 + L1PA4 LINE L1 4077 6152 -3 223 319 100 62 chr6 17875237 17875259 -164539983 + MIR3 SINE MIR 188 208 0 334 100 0 0 chr6 17875434 17875484 -164539758 + L1MB3 LINE L1 6093 6142 -41 2155 116 3 0 chr6 17875484 17875777 -164539465 + AluSq SINE Alu 1 294 -19 261 321 28 0 chr6 17876717 17876823 -164538419 + MIR3 SINE MIR 96 204 -4 282 360 0 9 chr6 17877396 17877510 -164537732 + L2 LINE L2 3137 3249 -23 291 300 50 81 chr6 17877530 17877827 -164537415 + L2 LINE L2 2596 2883 -431 284 340 50 10 chr6 17878032 17878132 -164537110 + L2 LINE L2 3209 3312 -1 230 286 122 20 chr6 17878172 17878189 -164537053 - MIR SINE MIR -66 142 128 2169 126 3 7 chr6 17878189 17878499 -164536743 + AluSg SINE Alu 1 309 -1 230 286 122 20 chr6 17878499 17878579 -164536663 - MIR SINE MIR -80 128 35 196 352 114 0 chr6 17878704 17878792 -164536450 + L2 LINE L2 2260 2357 -957 300 271 175 22 chr6 17879087 17879316 -164535926 + L2 LINE L2 2451 2714 -600 195 42 0 0 chr6 17879644 17879668 -164535574 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 530 343 70 18 chr6 17879703 17880102 -164535140 + L1M4 LINE L1 2121 2540 -3606 357 271 60 0 chr6 17880311 17880444 -164534798 + L1ME2 LINE L1 2329 2469 -3677 2295 125 0 0 chr6 17880490 17880801 -164534441 + AluSx SINE Alu 1 311 -1 574 227 70 44 chr6 17880802 17881186 -164534056 + L1ME2 LINE L1 3118 3511 -2635 405 158 35 55 chr6 17881173 17881292 -164533950 + L1MD2 LINE L1 6035 6141 -25 * 1231 246 50 47 chr6 17881301 17881902 -164533340 + L1ME2 LINE L1 3479 4081 -2065 555 265 103 29 chr6 17881917 17882294 -164532948 + L1ME2 LINE L1 4349 4753 -1393 23 55 0 18 chr6 17882299 17882333 -164532909 + AT_rich Low_complexity Low_complexity 1 35 -19 2071 143 0 0 chr6 17882333 17882634 -164532608 - AluJo SINE Alu -11 301 1 23 55 0 18 chr6 17882634 17882654 -164532588 + AT_rich Low_complexity Low_complexity 35 54 0 732 180 50 0 chr6 17882654 17882793 -164532449 - FRAM SINE Alu -30 146 1 1023 244 127 6 chr6 17882807 17883279 -164531963 + L1ME2 LINE L1 4757 5285 -861 228 182 0 0 chr6 17883279 17883323 -164531919 + (TA)n Simple_repeat Simple_repeat 1 44 0 1435 169 12 12 chr6 17883374 17883622 -164531620 - AluJb SINE Alu -22 290 43 1305 216 29 10 chr6 17883642 17883952 -164531290 + L1ME2 LINE L1 5825 6140 -24 867 194 0 6 chr6 17885420 17885580 -164529662 + MER5A DNA MER1_type 9 167 -22 2002 131 27 0 chr6 17885622 17885920 -164529322 + AluSx SINE Alu 1 306 -6 428 0 19 0 chr6 17885921 17885973 -164529269 + (CA)n Simple_repeat Simple_repeat 1 53 0 32 0 0 0 chr6 17886527 17886559 -164528683 + AT_rich Low_complexity Low_complexity 1 32 0 397 270 63 59 chr6 17886954 17887144 -164528098 - MIR SINE MIR -19 243 50 279 281 177 0 chr6 17887928 17888024 -164527218 + L2 LINE L2 3160 3272 0 427 275 25 17 chr6 17888181 17888301 -164526941 + MIR SINE MIR 32 152 -56 889 221 37 28 chr6 17888372 17888589 -164526653 - MER58A DNA MER1_type -5 219 1 285 235 173 12 chr6 17890764 17890845 -164524397 + L2 LINE L2 3214 3307 -6 978 204 76 25 chr6 17891447 17891761 -164523481 + MLT1C LTR MaLR 134 463 -4 602 258 79 120 chr6 17891822 17892240 -164523002 + L2 LINE L2 2913 3313 0 195 273 23 0 chr6 17892495 17892539 -164522703 + MIR SINE MIR 77 121 -87 197 294 92 28 chr6 17892609 17892718 -164522524 - L2 LINE L2 -7 3306 3191 1862 165 0 10 chr6 17893090 17893393 -164521849 + AluJo SINE Alu 1 300 -12 25 0 0 0 chr6 17895045 17895070 -164520172 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 17895434 17895458 -164519784 + AT_rich Low_complexity Low_complexity 1 24 0 2263 100 3 3 chr6 17897845 17898144 -164517098 + AluSx SINE Alu 1 299 -13 2050 103 41 17 chr6 17898329 17898621 -164516621 + AluSq SINE Alu 1 299 -14 342 291 58 53 chr6 17899718 17899907 -164515335 - MIR3 SINE MIR -14 194 5 460 244 207 0 chr6 17900386 17900521 -164514721 - MIR SINE MIR -48 214 52 186 296 136 25 chr6 17900897 17900978 -164514264 - MIR3 SINE MIR -117 91 2 294 132 38 38 chr6 17901611 17901664 -164513578 + MIR SINE MIR 205 257 -5 1931 136 14 14 chr6 17901747 17902041 -164513201 + AluSx SINE Alu 1 294 -18 267 114 0 0 chr6 17902230 17902274 -164512968 + (TA)n Simple_repeat Simple_repeat 1 44 0 211 366 70 21 chr6 17902508 17902650 -164512592 - MIR3 SINE MIR -56 152 4 354 45 0 0 chr6 17903186 17903230 -164512012 + (T)n Simple_repeat Simple_repeat 1 44 0 2176 130 0 0 chr6 17904035 17904336 -164510906 + AluSx SINE Alu 1 301 -11 1791 158 3 20 chr6 17905025 17905328 -164509914 + AluJo SINE Alu 1 298 -14 1962 119 69 0 chr6 17905330 17905607 -164509635 + AluSp SINE Alu 1 296 -17 836 134 0 19 chr6 17905613 17905851 -164509391 + AluSx SINE Alu 2 291 -21 214 277 31 0 chr6 17906141 17906206 -164509036 + GA-rich Low_complexity Low_complexity 3 69 0 1884 139 51 0 chr6 17906266 17906540 -164508702 - AluSx SINE Alu -24 288 1 210 176 14 40 chr6 17906690 17906764 -164508478 + T-rich Low_complexity Low_complexity 2 73 0 730 225 182 10 chr6 17906822 17907031 -164508211 + MIR SINE MIR 2 246 -16 630 110 0 0 chr6 17907503 17907585 -164507657 + AluSg/x SINE Alu 214 295 -14 180 0 0 0 chr6 17910916 17910936 -164504306 + (A)n Simple_repeat Simple_repeat 1 20 0 875 158 0 0 chr6 17912446 17912579 -164502663 - FLAM_C SINE Alu 0 133 1 210 325 65 32 chr6 17912797 17912920 -164502322 + MIR SINE MIR 21 147 -61 318 358 64 37 chr6 17915386 17915862 -164499380 - L2 LINE L2 -162 3110 2624 332 292 168 30 chr6 17916765 17916967 -164498275 + L1ME LINE L1 5354 5583 -776 345 300 64 21 chr6 17917021 17917161 -164498081 + L1ME LINE L1 5677 5822 -299 363 23 0 0 chr6 17917680 17917724 -164497518 + (TG)n Simple_repeat Simple_repeat 2 45 0 531 267 39 37 chr6 17917776 17917963 -164497279 - MIR SINE MIR -62 146 3 528 284 53 12 chr6 17918612 17918781 -164496461 - MIR3 SINE MIR -3 205 30 185 250 0 0 chr6 17920125 17920165 -164495077 + L2 LINE L2 3179 3218 -95 746 236 5 1 chr6 17920171 17920343 -164494899 + MIR SINE MIR 24 198 -62 213 313 42 21 chr6 17921561 17921657 -164493585 + L2 LINE L2 2205 2302 -1012 2312 122 0 0 chr6 17922703 17923015 -164492227 - AluSx SINE Alu 0 312 1 603 306 54 27 chr6 17923597 17923819 -164491423 - MIR SINE MIR -28 234 7 310 290 149 26 chr6 17924063 17924218 -164491024 - MER5B DNA MER1_type 0 189 2 288 120 0 0 chr6 17925728 17925778 -164489464 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 21 0 0 0 chr6 17925954 17925975 -164489267 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 17927883 17927916 -164487326 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr6 17931277 17931305 -164483937 + (T)n Simple_repeat Simple_repeat 1 28 0 183 42 0 0 chr6 17931445 17931469 -164483773 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 228 246 0 0 chr6 17931725 17931782 -164483460 + (CA)n Simple_repeat Simple_repeat 1 57 0 365 294 154 89 chr6 17931848 17932790 -164482452 + L1M2 LINE L1 308 1310 -5539 327 49 0 0 chr6 17932804 17932845 -164482397 + (CA)n Simple_repeat Simple_repeat 2 42 0 362 100 17 0 chr6 17933231 17933291 -164481951 + (TCC)n Simple_repeat Simple_repeat 1 61 0 192 149 0 0 chr6 17933306 17933353 -164481889 + (CTCG)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr6 17933491 17933515 -164481727 + GC_rich Low_complexity Low_complexity 1 24 0 406 310 168 0 chr6 17936107 17936262 -164478980 + MER5A DNA MER1_type 9 189 0 24 32 0 0 chr6 17937333 17937364 -164477878 + AT_rich Low_complexity Low_complexity 1 31 0 632 145 23 174 chr6 17938352 17938639 -164476603 + Charlie5 DNA MER1_type 23 352 -2233 1752 138 62 17 chr6 17938639 17938929 -164476313 - AluJb SINE Alu -9 303 1 632 145 23 174 chr6 17938929 17939018 -164476224 + Charlie5 DNA MER1_type 352 2585 0 1015 16 132 0 chr6 17940662 17940783 -164474459 - MER85 DNA T2_type -2 137 1 2162 192 44 26 chr6 17942109 17942568 -164472674 + MLT1C LTR MaLR 1 467 0 1536 236 121 19 chr6 17943237 17944061 -164471181 + L2 LINE L2 2403 3313 0 322 298 38 53 chr6 17944260 17944391 -164470851 - MIR SINE MIR -54 208 80 225 154 0 0 chr6 17945073 17945112 -164470130 + A-rich Low_complexity Low_complexity 1 39 0 567 254 45 57 chr6 17945944 17946121 -164469121 - MIR3 SINE MIR -19 189 15 1823 162 0 10 chr6 17946886 17947194 -164468048 - AluJo SINE Alu -7 305 1 676 48 0 0 chr6 17947301 17947384 -164467858 - L1P LINE L1 -2342 3804 3722 3246 27 27 0 chr6 17947384 17947751 -164467491 + L1PA4 LINE L1 5773 6151 -4 762 237 56 56 chr6 17948741 17949028 -164466214 + L1ME3A LINE L1 5817 6103 -67 2126 112 11 0 chr6 17949061 17949347 -164465895 + AluSx SINE Alu 1 289 -23 1045 254 116 19 chr6 17949441 17949779 -164465463 + L1ME3A LINE L1 5510 5897 -273 2200 130 0 0 chr6 17949779 17950086 -164465156 + AluSq SINE Alu 1 307 -6 1045 254 116 19 chr6 17950086 17950160 -164465082 + L1ME3A LINE L1 5897 5962 -208 1794 160 0 11 chr6 17950195 17950476 -164464766 - AluJo SINE Alu -34 278 1 378 237 23 53 chr6 17950477 17950608 -164464634 + L1ME3A LINE L1 6044 6170 0 21 0 0 0 chr6 17950718 17950739 -164464503 + AT_rich Low_complexity Low_complexity 1 21 0 273 248 174 9 chr6 17951471 17951580 -164463662 + L2 LINE L2 3186 3312 -1 1367 191 67 24 chr6 17951639 17951802 -164463440 - AluJo SINE Alu -1 311 157 213 39 0 0 chr6 17951802 17951828 -164463414 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2131 103 0 7 chr6 17951830 17952112 -164463130 - AluSx SINE Alu -32 280 1 1367 191 67 24 chr6 17952112 17952243 -164462999 - AluJo SINE Alu -155 157 1 250 306 50 50 chr6 17952422 17952588 -164462654 - MIR SINE MIR -49 213 51 504 217 167 0 chr6 17953103 17953241 -164462001 + MER5A DNA MER1_type 28 188 -1 237 139 0 0 chr6 17954882 17954925 -164460317 + (CA)n Simple_repeat Simple_repeat 2 44 0 1221 218 12 112 chr6 17955770 17956182 -164459060 + MLT1B LTR MaLR 6 376 -14 838 211 6 6 chr6 17956196 17956357 -164458885 + MLT1C LTR MaLR 307 467 0 6022 78 0 0 chr6 17956505 17957272 -164457970 + L1PA14 LINE L1 5395 6161 0 1584 194 3 3 chr6 17958025 17958339 -164456903 + AluJb SINE Alu 1 314 0 262 320 29 19 chr6 17958359 17958462 -164456780 - L2 LINE L2 -179 3093 2990 381 370 46 0 chr6 17958635 17958808 -164456434 - L2 LINE L2 -541 2773 2593 1706 180 31 63 chr6 17958850 17959233 -164456009 + MLT1A2 LTR MaLR 4 374 0 490 326 144 13 chr6 17959368 17959904 -164455338 - L2 LINE L2 -1216 2098 1493 3045 132 7 2 chr6 17959913 17960339 -164454903 - MSTA LTR MaLR 0 428 1 9799 150 39 6 chr6 17960345 17961937 -164453305 - MSTA-int LTR MaLR -7 1644 1 2979 126 19 0 chr6 17961937 17962357 -164452885 - MSTA LTR MaLR 0 428 1 451 344 122 36 chr6 17962360 17963035 -164452207 - L2 LINE L2 -1852 1462 730 2228 227 46 91 chr6 17963056 17963373 -164451869 + L1MD1 LINE L1 21 351 -6189 216 0 0 0 chr6 17963373 17963397 -164451845 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2228 227 46 91 chr6 17963397 17963937 -164451305 + L1MD1 LINE L1 351 1010 -5530 1412 170 0 5 chr6 17964008 17964226 -164451016 - Tigger3(Golem) DNA MER2_type -2812 217 1 330 104 0 0 chr6 17964226 17964274 -164450968 + L1MA9 LINE L1 6265 6312 0 1348 211 76 3 chr6 17964316 17964619 -164450623 - MLT1C LTR MaLR -90 377 53 6107 197 98 18 chr6 17964626 17966265 -164448977 + L1MD1 LINE L1 1095 2601 -3939 2230 125 0 0 chr6 17966265 17966569 -164448673 + AluSx SINE Alu 1 304 -8 6107 197 98 18 chr6 17966569 17967876 -164447366 + L1MD1 LINE L1 2601 4267 -2273 5179 178 47 20 chr6 17967879 17968328 -164446914 + L1MD1 LINE L1 5211 5646 -990 1972 121 66 0 chr6 17968328 17968617 -164446625 + AluSg SINE Alu 1 308 -2 5179 178 47 20 chr6 17968617 17969538 -164445704 + L1MD1 LINE L1 5646 6636 0 273 271 57 43 chr6 17970382 17970430 -164444812 + MIR3 SINE MIR 64 110 -98 2529 69 0 3 chr6 17970430 17970736 -164444506 - AluSg SINE Alu -5 305 1 273 271 57 43 chr6 17970736 17970827 -164444415 + MIR3 SINE MIR 110 205 -3 231 170 0 0 chr6 17971064 17971111 -164444131 + T-rich Low_complexity Low_complexity 3 49 0 180 0 0 0 chr6 17973805 17973825 -164441417 + (TC)n Simple_repeat Simple_repeat 2 21 0 196 336 59 8 chr6 17976219 17976338 -164438904 + L2 LINE L2 2933 3057 -215 624 289 31 21 chr6 17976573 17976813 -164438429 - MIR SINE MIR -6 256 7 185 165 215 89 chr6 17976813 17976892 -164438350 - MER5B DNA MER1_type -3 175 87 221 305 137 0 chr6 17976899 17976994 -164438248 + L2 LINE L2 3199 3306 -7 606 245 5 58 chr6 17977019 17977207 -164438035 - MER5B DNA MER1_type 0 178 1 398 217 0 24 chr6 17977207 17977290 -164437952 - MER5B DNA MER1_type -97 81 1 738 246 60 32 chr6 17978120 17978340 -164436902 - MIR SINE MIR 0 262 38 227 358 77 57 chr6 17978783 17979225 -164436017 + L2 LINE L2 2851 3301 -12 1902 113 3 45 chr6 17979239 17979568 -164435674 - AluSx SINE Alu 0 321 5 269 164 16 33 chr6 17979677 17979738 -164435504 + LTR33 LTR ERVL 462 521 0 1509 234 33 28 chr6 17980348 17980771 -164434471 - MLT1C LTR MaLR -42 425 1 2365 195 32 24 chr6 17981353 17982002 -164433240 - L1MCa LINE L1 -4601 2144 1310 2223 183 47 14 chr6 17982006 17982493 -164432749 - L1MCa LINE L1 -4849 1196 694 285 276 11 23 chr6 17982460 17982547 -164432695 - L1MCa LINE L1 -6320 244 159 * 306 259 159 41 chr6 17982565 17982785 -164432457 - L1ME4a LINE L1 -29 6092 5847 755 262 28 33 chr6 17982885 17983099 -164432143 + MIR SINE MIR 6 218 -44 223 175 12 38 chr6 17983579 17983659 -164431583 + A-rich Low_complexity Low_complexity 4 81 0 344 357 89 24 chr6 17983921 17984212 -164431030 + L2 LINE L2 2429 2738 -576 3498 112 0 6 chr6 17984554 17985046 -164430196 + LOR1a LTR ERV1 9 497 0 192 304 196 9 chr6 17985046 17985158 -164430084 + L2 LINE L2 3137 3269 -3 361 281 10 10 chr6 17985407 17985503 -164429739 - MIR3 SINE MIR -24 184 89 212 130 0 56 chr6 17985662 17985716 -164429526 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 562 200 130 0 chr6 17986222 17986322 -164428920 - AluJo/FRAM SINE Alu -63 249 137 1781 174 20 0 chr6 17986322 17986616 -164428626 - AluJo SINE Alu -8 304 5 26 30 0 0 chr6 17987046 17987079 -164428163 + AT_rich Low_complexity Low_complexity 1 33 0 2026 143 0 0 chr6 17987083 17987363 -164427879 - AluSx SINE Alu -30 282 3 2437 57 23 10 chr6 17987385 17987685 -164427557 - AluY SINE Alu -7 304 1 458 49 0 33 chr6 17988441 17988496 -164426746 + AluY SINE Alu 2 55 -258 1483 84 0 0 chr6 17988496 17988675 -164426567 + AluSg/x SINE Alu 96 274 -36 207 0 0 0 chr6 17988682 17988705 -164426537 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 294 29 0 0 chr6 17988939 17988974 -164426268 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 27 0 0 0 chr6 17989381 17989408 -164425834 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr6 17989945 17989996 -164425246 + AT_rich Low_complexity Low_complexity 1 51 0 188 302 19 0 chr6 17990131 17990184 -164425058 - MIR SINE MIR -14 248 195 336 121 3 0 chr6 17990191 17990246 -164424996 - AluJ/FLAM SINE Alu -243 59 14 2167 106 17 0 chr6 17990311 17990604 -164424638 + AluSg SINE Alu 1 298 -12 657 86 108 0 chr6 17991809 17991902 -164423340 + AluJ SINE Alu 23 125 -187 5303 70 44 3 chr6 17991904 17992580 -164422662 - L1PA8 LINE L1 0 6172 5469 2005 93 0 0 chr6 17992582 17992860 -164422382 - L1PA8 LINE L1 -771 5375 5098 905 139 85 12 chr6 17992936 17993101 -164422141 + AluJ SINE Alu 122 298 -14 190 266 38 38 chr6 17993358 17993437 -164421805 - L2 LINE L2 0 3272 3194 195 182 18 73 chr6 17994438 17994493 -164420749 - L3 LINE CR1 -5 1572 1521 246 342 26 17 chr6 17994654 17994771 -164420471 - MIR SINE MIR -109 153 36 551 244 101 12 chr6 17995135 17995303 -164419939 - MIR SINE MIR 0 262 80 331 319 43 0 chr6 17995761 17995855 -164419387 - L2 LINE L2 -25 3247 3150 1241 172 89 0 chr6 17995859 17996062 -164419180 + MER58A DNA MER1_type 4 224 0 766 261 111 4 chr6 17996171 17996405 -164418837 - MIR SINE MIR -2 260 2 2194 106 7 3 chr6 17998197 17998490 -164416752 + AluSc SINE Alu 1 294 -15 327 172 17 0 chr6 17998811 17998869 -164416373 + MER91B DNA MER1_type 2 60 -130 16067 123 36 1 chr6 17999579 18000472 -164414770 - Tigger1 DNA MER2_type -1 2417 1557 1753 179 0 13 chr6 18000472 18000774 -164414468 - AluJo SINE Alu -14 298 1 16067 123 36 1 chr6 18000774 18002212 -164413030 - Tigger1 DNA MER2_type -861 1557 3 243 259 0 0 chr6 18002318 18002372 -164412870 + T-rich Low_complexity Low_complexity 1 54 0 227 229 13 106 chr6 18002400 18002565 -164412677 - MIR3 SINE MIR -23 185 65 221 167 24 0 chr6 18002565 18002607 -164412635 + MER5B DNA MER1_type 1 43 -135 302 309 49 37 chr6 18002635 18002797 -164412445 + MER5A DNA MER1_type 8 171 -18 * 713 159 37 37 chr6 18002665 18002828 -164412414 - MER5A DNA MER1_type -24 165 3 2406 90 0 0 chr6 18003162 18003462 -164411780 - AluY SINE Alu -11 300 1 317 349 112 0 chr6 18003687 18003839 -164411403 - L2 LINE L2 -1 3271 3103 297 257 59 22 chr6 18005435 18005571 -164409671 + L3b LINE CR1 1122 1262 -321 1193 206 19 43 chr6 18005586 18005608 -164409634 - MER33 DNA MER1_type -2268 317 296 2346 103 0 0 chr6 18005608 18005908 -164409334 + AluSq SINE Alu 1 300 -13 1193 206 19 43 chr6 18005908 18006210 -164409032 - MER33 DNA MER1_type -2289 296 1 512 217 0 9 chr6 18006332 18006438 -164408804 - MER5B DNA MER1_type -73 105 1 193 209 0 0 chr6 18006444 18006487 -164408755 + L3b LINE CR1 1371 1413 -170 238 213 33 16 chr6 18006527 18006588 -164408654 - MIR3 SINE MIR -21 187 126 219 36 0 0 chr6 18006675 18006703 -164408539 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2155 98 0 18 chr6 18006703 18006989 -164408253 - AluSq SINE Alu -32 281 1 2321 49 0 11 chr6 18007329 18007641 -164407601 - AluY SINE Alu 0 309 1 336 338 80 7 chr6 18010104 18010255 -164404987 + MIR SINE MIR 88 249 -13 234 306 0 0 chr6 18010472 18010521 -164404721 + L2 LINE L2 3186 3234 -38 479 209 39 23 chr6 18010580 18010709 -164404533 - MER69A DNA AcHobo -45 132 2 2198 90 30 13 chr6 18010987 18011287 -164403955 + AluSc SINE Alu 1 305 -4 1685 167 57 47 chr6 18011293 18011676 -164403566 - MLT1B LTR MaLR 0 390 4 264 309 21 0 chr6 18011914 18012008 -164403234 + CT-rich Low_complexity Low_complexity 1 96 0 300 300 12 0 chr6 18012263 18012343 -164402899 + MIR3 SINE MIR 112 192 -16 203 382 53 59 chr6 18012820 18012972 -164402270 - L2 LINE L2 -18 3254 3104 1150 273 68 32 chr6 18014197 18014666 -164400576 - L1ME4a LINE L1 -21 6100 5615 2427 65 3 3 chr6 18015465 18015756 -164399486 - AluSp SINE Alu -22 291 1 183 245 38 19 chr6 18015805 18015858 -164399384 - L2 LINE L2 -82 3190 3137 1003 184 163 0 chr6 18016083 18016328 -164398914 - Zaphod DNA AcHobo -13 4018 3734 246 222 122 0 chr6 18016433 18016523 -164398719 + L1ME4a LINE L1 6021 6121 0 196 340 0 39 chr6 18016678 18016781 -164398461 + L3 LINE CR1 100 198 -1379 343 318 97 9 chr6 18016907 18017135 -164398107 - MIR SINE MIR -12 250 2 21 0 0 0 chr6 18017654 18017675 -164397567 + AT_rich Low_complexity Low_complexity 1 21 0 1951 93 0 0 chr6 18017815 18018062 -164397180 + AluY SINE Alu 50 296 -15 505 150 0 0 chr6 18018464 18018544 -164396698 - MADE1 DNA Mariner 0 80 1 332 322 34 80 chr6 18019804 18019916 -164395326 - L2 LINE L2 -56 3216 3100 186 43 0 0 chr6 18019916 18019939 -164395303 + (CAA)n Simple_repeat Simple_repeat 2 24 0 332 322 34 80 chr6 18019939 18020288 -164394954 - L2 LINE L2 -172 3100 2688 420 322 99 25 chr6 18020458 18020700 -164394542 - MIR SINE MIR 0 262 3 208 100 20 20 chr6 18022446 18022496 -164392746 + (CAAAAA)n Simple_repeat Simple_repeat 4 53 0 368 305 120 73 chr6 18023809 18024068 -164391174 + L3 LINE CR1 241 511 -1066 413 276 269 15 chr6 18024104 18024372 -164390870 + L3 LINE CR1 1113 1448 -129 329 270 9 49 chr6 18024827 18024998 -164390244 - MIR SINE MIR -62 146 37 2344 105 3 0 chr6 18025542 18025846 -164389396 + AluSp SINE Alu 1 305 -8 23 78 0 0 chr6 18025874 18025925 -164389317 + AT_rich Low_complexity Low_complexity 1 51 0 336 224 112 9 chr6 18028235 18028342 -164386900 + MER103 DNA DNA 3 120 -46 199 265 20 0 chr6 18028426 18028475 -164386767 - MIR SINE MIR -80 128 79 258 81 0 0 chr6 18029638 18029675 -164385567 + (CA)n Simple_repeat Simple_repeat 1 37 0 657 196 6 18 chr6 18029866 18030034 -164385208 + GA-rich Low_complexity Low_complexity 3 168 0 3249 16 0 0 chr6 18031978 18032348 -164382894 - L1HS LINE L1 -1516 4630 4261 8010 18 0 0 chr6 18032348 18033848 -164381394 + L1HS LINE L1 4654 6153 -2 348 219 0 0 chr6 18033850 18033978 -164381264 + A-rich Low_complexity Low_complexity 1 128 0 198 326 0 0 chr6 18034148 18034194 -164381048 + MIR SINE MIR 36 81 -127 191 302 58 58 chr6 18034234 18034320 -164380922 - L3b LINE CR1 -30 1553 1468 381 244 12 0 chr6 18035383 18035465 -164379777 + MLT1L LTR MaLR 118 200 -415 451 239 26 9 chr6 18035762 18035875 -164379367 + MLT1L LTR MaLR 501 615 0 185 358 11 21 chr6 18036056 18036151 -164379091 + MIR SINE MIR 45 138 -70 199 310 113 0 chr6 18036227 18036298 -164378944 - L2 LINE L2 -36 3277 3199 548 291 141 10 chr6 18037046 18037252 -164377990 + MIR SINE MIR 20 252 -10 2616 55 0 3 chr6 18037401 18037711 -164377531 - AluY SINE Alu -2 309 1 2530 80 0 0 chr6 18038795 18039106 -164376136 + AluY SINE Alu 1 311 0 221 313 0 12 chr6 18039385 18039465 -164375777 + T-rich Low_complexity Low_complexity 4 82 0 1856 139 34 7 chr6 18039485 18039779 -164375463 + AluJb SINE Alu 3 304 -8 243 0 0 0 chr6 18040685 18040712 -164374530 + (TG)n Simple_repeat Simple_repeat 1 27 0 2185 130 0 0 chr6 18041772 18042073 -164373169 + AluSx SINE Alu 1 301 -11 466 305 117 20 chr6 18042196 18042445 -164372797 + L2 LINE L2 2808 3080 -233 245 237 160 38 chr6 18042477 18042608 -164372634 - MLT1J2 LTR MaLR -50 400 254 388 185 245 13 chr6 18042650 18042765 -164372477 - MLT1J2 LTR MaLR -284 163 28 334 319 43 37 chr6 18042824 18043012 -164372230 + L2 LINE L2 3121 3309 -4 1919 132 0 0 chr6 18043053 18043326 -164371916 + AluSc SINE Alu 36 308 -1 252 0 0 0 chr6 18043345 18043373 -164371869 + (TG)n Simple_repeat Simple_repeat 2 29 0 241 299 0 0 chr6 18043374 18043441 -164371801 - L2 LINE L2 -301 2971 2905 21 0 0 0 chr6 18043569 18043590 -164371652 + AT_rich Low_complexity Low_complexity 1 21 0 1561 184 40 4 chr6 18043980 18044257 -164370985 - AluJo SINE Alu -25 287 1 200 333 58 0 chr6 18044420 18044489 -164370753 - L2 LINE L2 -62 3210 3138 290 268 79 61 chr6 18045728 18045784 -164369458 + MLT1I LTR MaLR 70 123 -286 1642 234 14 22 chr6 18045784 18045944 -164369298 - MLT1A1 LTR MaLR 0 365 205 2350 85 0 20 chr6 18045944 18046249 -164368993 - AluY SINE Alu -12 299 1 1642 234 14 22 chr6 18046249 18046456 -164368786 - MLT1A1 LTR MaLR -160 205 1 290 268 79 61 chr6 18046456 18046563 -164368679 + MLT1I LTR MaLR 123 236 -173 345 264 11 0 chr6 18046586 18046673 -164368569 + MLT1J1 LTR MaLR 345 432 -14 185 309 189 45 chr6 18047260 18047461 -164367781 + L2 LINE L2 2829 3058 -214 4933 194 47 27 chr6 18047513 18048457 -164366785 - L1MB8 LINE L1 -59 6399 5475 6823 96 12 6 chr6 18048457 18050377 -164364865 - L1PA14 LINE L1 0 6161 4233 4933 194 47 27 chr6 18050377 18051541 -164363701 - L1MB8 LINE L1 -983 5475 4252 6609 210 73 43 chr6 18051565 18051954 -164363288 - L1MB8 LINE L1 -3327 3099 2723 2353 101 0 22 chr6 18051954 18052271 -164362971 + AluY SINE Alu 1 310 -1 6609 210 73 43 chr6 18052271 18054357 -164360885 - L1MB8 LINE L1 -3703 2723 493 207 0 0 0 chr6 18054923 18054946 -164360296 + (A)n Simple_repeat Simple_repeat 1 23 0 1926 150 7 0 chr6 18054958 18055252 -164359990 - AluSx SINE Alu -16 296 1 497 247 161 0 chr6 18055359 18055533 -164359709 + MIR SINE MIR 57 258 -4 471 291 0 0 chr6 18106219 18106329 -164308913 + MER81 DNA DNA 5 114 0 4859 267 63 38 chr6 18106656 18107474 -164307768 + L1MEc LINE L1 118 914 -5482 2045 151 0 0 chr6 18107474 18107766 -164307476 + AluJb SINE Alu 1 292 -20 234 0 0 0 chr6 18107776 18107802 -164307440 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4859 267 63 38 chr6 18107802 18108021 -164307221 + L1MEc LINE L1 922 1134 -5262 1376 236 12 60 chr6 18108021 18108274 -164306968 - MSTD LTR MaLR 0 396 169 2073 122 0 3 chr6 18108274 18108562 -164306680 - AluSx SINE Alu -19 293 7 1376 236 12 60 chr6 18108562 18108724 -164306518 - MSTD LTR MaLR -227 169 1 4859 267 63 38 chr6 18108724 18109868 -164305374 + L1MEc LINE L1 1134 2367 -4029 999 275 37 62 chr6 18110227 18110710 -164304532 - L1ME LINE L1 -366 5873 5403 407 297 118 44 chr6 18110750 18110865 -164304377 - L1ME LINE L1 -818 5397 5292 2217 112 3 0 chr6 18110865 18111168 -164304074 - AluY SINE Alu -7 304 1 407 297 118 44 chr6 18111168 18111281 -164303961 - L1ME LINE L1 -923 5292 5152 607 226 0 0 chr6 18111315 18111430 -164303812 - FLAM_A SINE Alu -17 116 2 2150 120 3 3 chr6 18111524 18111824 -164303418 + AluSx SINE Alu 1 300 -12 909 263 98 63 chr6 18111826 18112743 -164302499 - L1ME LINE L1 -1114 5101 4153 375 290 79 46 chr6 18112758 18112893 -164302349 - L1ME LINE L1 -3999 2397 2268 2083 144 0 6 chr6 18112893 18113206 -164302036 - AluSx SINE Alu -1 311 1 375 290 79 46 chr6 18113206 18113550 -164301692 - L1ME LINE L1 -4128 2268 1902 226 333 12 24 chr6 18113745 18113829 -164301413 - L2 LINE L2 -679 2635 2553 33 0 0 0 chr6 18114336 18114369 -164300873 + AT_rich Low_complexity Low_complexity 1 33 0 244 272 92 34 chr6 18114413 18114484 -164300758 - HAL1 LINE L1 -116 2391 2326 2300 118 31 11 chr6 18114484 18114841 -164300401 - THE1B LTR MaLR 0 364 1 244 272 92 34 chr6 18114841 18115952 -164299290 - HAL1 LINE L1 -181 2326 1113 1733 153 0 21 chr6 18116263 18116545 -164298697 + AluJo SINE Alu 5 280 -32 468 0 0 0 chr6 18116548 18116600 -164298642 + (CA)n Simple_repeat Simple_repeat 2 53 0 333 279 0 0 chr6 18117711 18117779 -164297463 + L2 LINE L2 3201 3268 -4 227 270 235 9 chr6 18117944 18118059 -164297183 - L2 LINE L2 -9 3304 3164 606 269 81 54 chr6 18118280 18118615 -164296627 + LTR33 LTR ERVL 1 344 -177 1288 189 30 43 chr6 18118616 18119005 -164296237 + MLT2B1 LTR ERVL 2 369 -45 387 171 0 0 chr6 18119012 18119088 -164296154 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 474 207 80 20 chr6 18119088 18119238 -164296004 + LTR33 LTR ERVL 363 521 0 4046 122 20 9 chr6 18119524 18120163 -164295079 - Tigger3b DNA MER2_type 0 1232 587 3257 50 0 2 chr6 18120173 18120575 -164294667 - L1PA7 LINE L1 -453 5701 5301 3583 50 7 4 chr6 18120575 18121022 -164294220 + L1PA7 LINE L1 5693 6151 -3 2467 94 90 17 chr6 18121039 18121452 -164293790 - Tigger3b DNA MER2_type -643 588 146 638 155 0 0 chr6 18121457 18121560 -164293682 + AluSp/q SINE Alu 207 309 -4 1667 128 0 8 chr6 18122167 18122410 -164292832 + AluSx SINE Alu 40 280 -32 240 35 0 0 chr6 18122410 18122439 -164292803 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 349 261 29 7 chr6 18122451 18122589 -164292653 + L1ME3A LINE L1 5811 5951 -219 259 227 40 148 chr6 18122657 18122751 -164292491 + L1ME3A LINE L1 5965 6033 -137 2509 77 0 0 chr6 18122751 18123061 -164292181 - AluY SINE Alu -1 310 1 259 227 40 148 chr6 18123061 18123142 -164292100 + L1ME3A LINE L1 6033 6121 -49 747 69 17 9 chr6 18123276 18123392 -164291850 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 2161 165 6 0 chr6 18123489 18123853 -164291389 - L1PB4 LINE L1 -2 6154 5789 270 136 0 0 chr6 18123853 18123897 -164291345 + (TG)n Simple_repeat Simple_repeat 2 45 0 455 243 28 62 chr6 18123994 18124171 -164291071 - MLT1J LTR MaLR -24 487 317 2050 142 3 0 chr6 18124927 18125222 -164290020 - AluSx SINE Alu -16 296 1 299 322 42 25 chr6 18125849 18125967 -164289275 + L2 LINE L2 3153 3272 0 852 149 186 0 chr6 18126233 18126427 -164288815 + L1MD2 LINE L1 6113 6342 -17 34 0 0 0 chr6 18126449 18126483 -164288759 + AT_rich Low_complexity Low_complexity 1 34 0 6591 76 8 0 chr6 18126619 18127543 -164287699 + L1PA13 LINE L1 5214 6144 -19 32 57 0 0 chr6 18127717 18127770 -164287472 + AT_rich Low_complexity Low_complexity 1 53 0 418 93 0 27 chr6 18128147 18128222 -164287020 - L1MA7 LINE L1 -25 6266 6194 1870 161 0 26 chr6 18128408 18128719 -164286523 + AluJb SINE Alu 3 305 -7 483 18 0 0 chr6 18130401 18130457 -164284785 + (TA)n Simple_repeat Simple_repeat 1 56 0 306 223 43 0 chr6 18131439 18131533 -164283709 - L1ME4a LINE L1 -1 6120 6023 * 4249 188 54 17 chr6 18131531 18133235 -164282007 + L1MB7 LINE L1 4381 6155 -29 406 190 115 2 chr6 18133388 18133552 -164281690 + LTR54B LTR ERV1 68 279 -219 401 266 0 47 chr6 18133742 18133911 -164281331 - MER34 LTR ERV1 -362 180 20 242 95 0 0 chr6 18134075 18134117 -164281125 + L1MB7 LINE L1 6142 6183 -1 303 28 0 0 chr6 18134248 18134284 -164280958 + (CA)n Simple_repeat Simple_repeat 1 36 0 230 241 19 0 chr6 18134391 18134445 -164280797 - MER113 DNA MER1_type? 0 521 467 440 219 18 0 chr6 18134584 18134698 -164280544 - MER113 DNA MER1_type? -405 116 1 531 287 59 87 chr6 18136376 18136881 -164278361 - MLT1J LTR MaLR -7 504 14 479 241 88 7 chr6 18137459 18137596 -164277646 - L1MC4a LINE L1 -1965 5843 5696 23 0 0 0 chr6 18137969 18137992 -164277250 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr6 18138446 18138480 -164276762 + AT_rich Low_complexity Low_complexity 1 34 0 228 325 49 32 chr6 18139050 18139173 -164276069 - MIR SINE MIR -64 144 20 336 275 152 7 chr6 18139456 18139594 -164275648 + MIR3 SINE MIR 29 186 -22 228 143 0 0 chr6 18140367 18140409 -164274833 + (TG)n Simple_repeat Simple_repeat 2 43 0 1423 256 96 29 chr6 18140586 18140960 -164274282 - L1ME LINE L1 -4676 1864 1516 2485 96 0 0 chr6 18140960 18141272 -164273970 - AluSx SINE Alu 0 312 1 1423 256 96 29 chr6 18141272 18141869 -164273373 - L1ME LINE L1 -5024 1516 853 375 298 32 43 chr6 18142144 18142332 -164272910 - L1ME LINE L1 -5883 647 462 231 269 40 99 chr6 18142536 18142628 -164272614 + L1ME LINE L1 103 178 -5892 195 42 0 0 chr6 18142628 18142652 -164272590 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 231 269 40 99 chr6 18142652 18142760 -164272482 + L1ME LINE L1 178 291 -5779 204 40 0 0 chr6 18143875 18143900 -164271342 + (TG)n Simple_repeat Simple_repeat 2 26 0 439 351 21 21 chr6 18144384 18144575 -164270667 - MIR3 SINE MIR -6 202 12 387 209 299 8 chr6 18145945 18146079 -164269163 + MER5A DNA MER1_type 9 181 -8 185 180 20 0 chr6 18146235 18146285 -164268957 + (TA)n Simple_repeat Simple_repeat 2 52 0 250 338 0 14 chr6 18146394 18146468 -164268774 - L2 LINE L2 -46 3226 3154 194 179 0 89 chr6 18147108 18147164 -164268078 - MIR3 SINE MIR -5 203 153 394 200 0 0 chr6 18147195 18147265 -164267977 - MIR3 SINE MIR -52 156 87 4088 216 61 81 chr6 18147491 18147908 -164267334 - L1ME LINE L1 -3890 2650 2226 2110 139 0 3 chr6 18147908 18148210 -164267032 + AluSx SINE Alu 3 303 -9 4088 216 61 81 chr6 18148210 18149059 -164266183 - L1ME LINE L1 -4314 2226 1465 231 61 0 0 chr6 18149059 18149092 -164266150 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4088 216 61 81 chr6 18149092 18149637 -164265605 - L1ME LINE L1 -5075 1465 911 327 362 53 32 chr6 18150100 18150382 -164264860 - L1ME LINE L1 -6194 346 59 290 287 29 103 chr6 18150382 18150518 -164264724 - MER5B DNA MER1_type -3 175 50 735 307 46 8 chr6 18150695 18150933 -164264309 + MIR SINE MIR 6 252 -10 253 295 0 13 chr6 18150925 18151003 -164264239 - MIR3 SINE MIR -40 168 92 * 243 0 0 0 chr6 18151375 18151402 -164263840 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 266 280 102 0 chr6 18152850 18152968 -164262274 + MIR SINE MIR 63 192 -70 388 312 0 0 chr6 18153049 18153158 -164262084 - MIR SINE MIR -1 261 153 203 133 0 0 chr6 18153208 18153238 -164262004 - MIR SINE MIR -115 147 118 180 97 0 0 chr6 18153254 18153285 -164261957 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 962 177 86 38 chr6 18153400 18153609 -164261633 + MER20 DNA MER1_type 1 219 0 261 368 7 14 chr6 18154520 18154664 -164260578 + GA-rich Low_complexity Low_complexity 4 146 0 1751 178 15 15 chr6 18156237 18156569 -164258673 + L1MC1 LINE L1 5907 6238 -95 883 135 8 0 chr6 18156827 18156953 -164258289 - MER20 DNA MER1_type 0 219 93 1359 257 149 39 chr6 18158026 18158644 -164256598 + L2 LINE L2 2172 2857 -457 1369 203 11 85 chr6 18158647 18159041 -164256201 + MLT1A1 LTR MaLR 1 456 -1 864 298 91 26 chr6 18159042 18159472 -164255770 + L2 LINE L2 2856 3313 0 553 261 174 19 chr6 18159754 18159961 -164255281 - MIR SINE MIR -1 261 23 309 256 13 13 chr6 18161588 18161666 -164253576 - MER102a DNA MER1_type -3 327 250 368 314 87 37 chr6 18161744 18161921 -164253321 - MER102a DNA MER1_type -66 264 70 2409 86 3 3 chr6 18161921 18162224 -164253018 - AluSq SINE Alu -10 303 1 368 314 87 37 chr6 18162224 18162288 -164252954 - MER102a DNA MER1_type -260 70 11 236 315 185 0 chr6 18162452 18162598 -164252644 + MIR3 SINE MIR 21 193 -15 515 277 6 51 chr6 18162769 18162946 -164252296 + MER5B DNA MER1_type 10 178 0 686 253 0 0 chr6 18163315 18163477 -164251765 + MER96B DNA MER1_type? 251 412 -5 381 254 85 0 chr6 18163495 18163613 -164251629 + MIR SINE MIR 90 217 -45 306 235 209 0 chr6 18164034 18164149 -164251093 - MER5A DNA MER1_type -5 184 46 640 171 57 0 chr6 18164149 18164254 -164250988 - MER45A DNA AcHobo -1 177 67 667 162 0 0 chr6 18164352 18164451 -164250791 + AluJ/FLAM SINE Alu 1 99 -213 258 200 44 0 chr6 18164519 18164564 -164250678 - MER5A DNA MER1_type -134 55 9 991 185 77 15 chr6 18164579 18164774 -164250468 + MER3 DNA MER1_type 1 207 -2 450 0 0 0 chr6 18165011 18165061 -164250181 + (TA)n Simple_repeat Simple_repeat 2 51 0 742 155 16 28 chr6 18165570 18165894 -164249348 + GA-rich Low_complexity Low_complexity 1 320 0 248 135 0 39 chr6 18165914 18165966 -164249276 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 227 198 22 22 chr6 18165997 18166088 -164249154 + GA-rich Low_complexity Low_complexity 2 92 0 253 273 91 21 chr6 18166437 18166580 -164248662 + L1P LINE L1 4886 5038 -1108 624 279 73 49 chr6 18166601 18166858 -164248384 - L1ME LINE L1 -525 5639 5356 1815 167 0 0 chr6 18166858 18167189 -164248053 - AluJb SINE Alu 0 331 1 624 279 73 49 chr6 18167189 18167341 -164247901 - L1ME LINE L1 -808 5356 5209 2071 127 6 13 chr6 18168025 18168325 -164246917 + AluSx SINE Alu 1 300 -12 811 86 0 16 chr6 18168325 18168453 -164246789 + (GGAA)n Simple_repeat Simple_repeat 2 127 0 2071 127 6 13 chr6 18168453 18168466 -164246776 + AluSx SINE Alu 300 312 0 358 278 25 5 chr6 18168848 18169027 -164246215 + L3 LINE CR1 1193 1456 -121 295 275 114 23 chr6 18169523 18169654 -164245588 + MIR SINE MIR 2 144 -118 313 276 75 30 chr6 18169683 18169817 -164245425 - MIR SINE MIR -36 226 87 21 0 0 0 chr6 18170989 18171010 -164244232 + AT_rich Low_complexity Low_complexity 1 21 0 225 45 68 80 chr6 18172025 18172113 -164243129 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 185 235 103 29 chr6 18174828 18174896 -164240346 + L2 LINE L2 100 172 -3142 390 274 89 36 chr6 18175227 18175581 -164239661 + L2 LINE L2 2651 3021 -251 470 288 89 25 chr6 18176635 18176871 -164238371 - L2 LINE L2 -937 2377 2127 2410 134 48 70 chr6 18177511 18177857 -164237385 - Tigger2a DNA MER2_type -2275 433 98 231 36 0 0 chr6 18177857 18177885 -164237357 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2410 134 48 70 chr6 18177885 18177979 -164237263 - Tigger2a DNA MER2_type -2610 98 3 1024 127 7 0 chr6 18177989 18178139 -164237103 + AluJb SINE Alu 1 151 -161 2280 98 0 7 chr6 18178228 18178523 -164236719 - AluSg SINE Alu -17 293 1 1601 153 51 37 chr6 18179191 18179486 -164235756 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr6 18181415 18181440 -164233802 + AT_rich Low_complexity Low_complexity 1 25 0 2489 84 0 0 chr6 18182802 18183113 -164232129 - AluY SINE Alu 0 311 1 572 124 277 22 chr6 18184036 18184173 -164231069 + MLT1C LTR MaLR 6 177 -290 460 192 0 0 chr6 18184178 18184256 -164230986 + FAM SINE Alu 97 174 -11 1614 171 26 55 chr6 18184337 18184646 -164230596 + AluJb SINE Alu 1 300 -12 943 197 67 31 chr6 18184646 18184869 -164230373 + MLT1C LTR MaLR 237 467 0 2316 99 0 0 chr6 18185110 18185412 -164229830 + AluSc SINE Alu 1 302 -7 263 324 152 58 chr6 18185714 18185897 -164229345 + L2 LINE L2 1271 1435 -1879 2361 112 16 48 chr6 18185897 18186273 -164228969 + THE1B LTR MaLR 1 364 0 263 324 152 58 chr6 18186273 18186792 -164228450 + L2 LINE L2 1435 2039 -1275 186 300 0 0 chr6 18186825 18186875 -164228367 + L2 LINE L2 2218 2267 -1047 342 324 28 0 chr6 18187434 18187542 -164227700 + L2 LINE L2 3203 3313 0 294 326 63 78 chr6 18187546 18188053 -164227189 + L2 LINE L2 2687 3181 -91 205 281 67 101 chr6 18189915 18190093 -164225149 + L2 LINE L2 2931 3102 -170 760 322 90 40 chr6 18190136 18190656 -164224586 - L2 LINE L2 -6 3307 2747 493 281 88 69 chr6 18190800 18191177 -164224065 + L2 LINE L2 2324 2707 -607 349 345 170 44 chr6 18191393 18191735 -164223507 + L2 LINE L2 2887 3271 -1 428 279 70 84 chr6 18192914 18193201 -164222041 - L2 LINE L2 -32 3240 2958 579 287 123 96 chr6 18194054 18194851 -164220391 + L2 LINE L2 2198 3030 -242 315 325 18 0 chr6 18194872 18194986 -164220256 + L2 LINE L2 2673 2788 -526 368 284 78 9 chr6 18195322 18195438 -164219804 - L2 LINE L2 0 3272 3149 299 282 0 12 chr6 18195550 18195635 -164219607 + L2 LINE L2 3230 3313 0 987 127 0 0 chr6 18196046 18196219 -164219023 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 2211 96 14 3 chr6 18196503 18196795 -164218447 - AluSc SINE Alu -14 295 1 341 114 0 51 chr6 18198458 18198537 -164216705 + (TC)n Simple_repeat Simple_repeat 2 76 0 385 282 63 50 chr6 18199344 18199750 -164215492 + L1ME4a LINE L1 5461 5915 -206 2492 234 65 50 chr6 18200625 18201267 -164213975 - L1M4 LINE L1 -871 5275 4644 2346 94 3 0 chr6 18201267 18201564 -164213678 - AluY SINE Alu -13 298 1 2492 234 65 50 chr6 18201564 18201838 -164213404 - L1M4 LINE L1 -1502 4644 4341 523 138 0 0 chr6 18201838 18201918 -164213324 - MADE1 DNA Mariner 0 80 1 2492 234 65 50 chr6 18201918 18201966 -164213276 - L1M4 LINE L1 -1805 4341 4295 1851 83 4 0 chr6 18201967 18202207 -164213035 - LTR12 LTR ERV1 0 714 474 1370 124 0 5 chr6 18202207 18202408 -164212834 + AluY SINE Alu 104 303 -8 1823 92 251 136 chr6 18202409 18202843 -164212399 - LTR12 LTR ERV1 -230 484 1 488 204 35 42 chr6 18202843 18202875 -164212367 - L1M4 LINE L1 -1849 4297 4266 2317 166 8 0 chr6 18202875 18203237 -164212005 + MER47A DNA MER2_type 1 365 -1 488 204 35 42 chr6 18203237 18203346 -164211896 - L1M4 LINE L1 -1880 4266 4157 846 293 111 11 chr6 18203366 18203816 -164211426 + Charlie7 DNA MER1_type 89 583 -2029 6195 133 18 28 chr6 18204025 18205530 -164209712 + L1MA4A LINE L1 4658 6143 -160 2488 93 0 0 chr6 18205530 18205842 -164209400 + AluSx SINE Alu 1 312 0 6195 133 18 28 chr6 18205842 18205983 -164209259 + L1MA4A LINE L1 6143 6284 -19 5232 91 5 33 chr6 18206494 18207153 -164208089 - L1PA14 LINE L1 -17 6144 5507 2120 138 0 0 chr6 18207153 18207458 -164207784 - AluSx SINE Alu -2 310 6 5232 91 5 33 chr6 18207458 18207564 -164207678 - L1PA14 LINE L1 -654 5507 5400 1091 342 67 33 chr6 18207769 18208530 -164206712 + L2 LINE L2 2032 2818 -496 431 313 49 0 chr6 18209389 18209533 -164205709 + L2 LINE L2 3162 3312 -1 1369 201 123 18 chr6 18209967 18210213 -164205029 + MLT1D LTR MaLR 13 304 -201 1519 188 7 11 chr6 18210213 18210490 -164204752 + AluSx SINE Alu 37 312 0 1369 201 123 18 chr6 18210490 18210576 -164204666 + MLT1D LTR MaLR 304 380 -125 435 189 22 0 chr6 18210618 18210708 -164204534 - L1MA9 LINE L1 -34 6278 6187 1371 210 30 0 chr6 18210747 18211014 -164204228 - AluSg SINE Alu -17 293 19 269 286 39 0 chr6 18211021 18211098 -164204144 - AluY SINE Alu -4 297 218 2306 190 197 59 chr6 18211111 18211951 -164203291 - LTR12 LTR ERV1 -23 1523 6 539 216 119 57 chr6 18212056 18212232 -164203010 - pTR5 LTR ERV1 -1504 934 748 1573 118 0 0 chr6 18212237 18212458 -164202784 - AluY SINE Alu -90 221 1 1314 153 54 12 chr6 18212458 18212693 -164202549 - L1MA9 LINE L1 -254 6058 5814 1084 201 0 0 chr6 18212711 18212895 -164202347 - AluJo SINE Alu -14 298 115 1251 198 119 8 chr6 18212895 18213163 -164202079 + AluJb SINE Alu 1 298 -14 1436 176 23 55 chr6 18213163 18213396 -164201846 + L1 LINE L1 4321 4541 -1605 7851 123 27 14 chr6 18213396 18213594 -164201648 + Tigger3b DNA MER2_type 2 196 -2832 2250 93 0 3 chr6 18213594 18213884 -164201358 + AluSc SINE Alu 1 289 -20 7851 123 27 14 chr6 18213884 18214899 -164200343 + Tigger3b DNA MER2_type 196 1231 0 1436 176 23 55 chr6 18214899 18215012 -164200230 + L1 LINE L1 4541 4656 -1490 301 121 103 17 chr6 18215012 18215070 -164200172 + MLT1D LTR MaLR 402 464 -41 281 98 0 20 chr6 18215325 18215376 -164199866 + (CA)n Simple_repeat Simple_repeat 2 51 0 2525 71 3 0 chr6 18216114 18216424 -164198818 + AluY SINE Alu 1 311 0 258 306 28 9 chr6 18216487 18216595 -164198647 - MIR SINE MIR -42 220 111 647 231 176 18 chr6 18217329 18217550 -164197692 - MER112 DNA MER1_type 0 256 1 6701 173 29 11 chr6 18217770 18217968 -164197274 - L1MC1 LINE L1 -9 6324 6131 2059 106 3 40 chr6 18217968 18218270 -164196972 - AluSq SINE Alu -22 291 1 6701 173 29 11 chr6 18218270 18220034 -164195208 - L1MC1 LINE L1 -202 6131 4330 2623 132 51 10 chr6 18220036 18220445 -164194797 + MSTB LTR MaLR 1 426 0 9433 185 6 7 chr6 18220445 18222083 -164193159 + MSTB-int LTR MaLR 1 1637 -14 2511 162 36 12 chr6 18222096 18222509 -164192733 + MSTB LTR MaLR 1 423 -3 1739 208 25 0 chr6 18222510 18222871 -164192371 - L1MC1 LINE L1 -1811 4335 3966 384 277 31 19 chr6 18223647 18223806 -164191436 - MIR SINE MIR -5 257 97 2113 166 52 6 chr6 18223858 18224207 -164191035 + MLT1A1 LTR MaLR 1 365 0 2236 121 0 6 chr6 18224308 18224622 -164190620 - AluSx SINE Alu 0 312 1 1313 269 53 27 chr6 18224997 18225446 -164189796 - LTR16B LTR ERVL 0 464 4 2888 161 25 42 chr6 18225584 18226113 -164189129 + MLT2B1 LTR ERVL 1 520 0 2241 168 35 38 chr6 18227082 18227535 -164187707 + MLT1C LTR MaLR 1 452 -15 198 71 0 0 chr6 18227836 18227864 -164187378 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1459 136 9 5 chr6 18230081 18230295 -164184947 + AluJb SINE Alu 87 301 -11 261 322 52 17 chr6 18230298 18230413 -164184829 + MIR SINE MIR 62 180 -82 415 206 0 62 chr6 18230653 18230750 -164184492 + L1MC5 LINE L1 7033 7123 -838 600 329 24 0 chr6 18230823 18231033 -164184209 + L2 LINE L2 2874 3088 -225 769 324 16 28 chr6 18231117 18231367 -164183875 + MIR SINE MIR 11 257 -5 447 214 137 23 chr6 18231416 18231547 -164183695 + L2 LINE L2 3167 3312 -1 197 333 76 23 chr6 18232145 18232277 -164182965 - L3 LINE CR1 -330 1247 1109 313 257 7 71 chr6 18232279 18232419 -164182823 - MER94 DNA DNA 0 134 4 1850 174 0 0 chr6 18232435 18232723 -164182519 - AluJo SINE Alu -20 292 5 791 270 72 28 chr6 18233830 18234521 -164180721 - L1ME LINE L1 -580 5582 4710 300 265 0 78 chr6 18234697 18234799 -164180443 - L1ME3A LINE L1 -115 6055 5962 811 133 0 53 chr6 18234809 18234960 -164180282 - FLAM_C SINE Alu 0 143 1 5293 221 62 54 chr6 18235016 18235797 -164179445 - L1ME1 LINE L1 -19 6147 5374 2469 75 0 0 chr6 18235797 18236138 -164179104 - AluY SINE Alu 0 311 1 5293 221 62 54 chr6 18236138 18236941 -164178301 - L1ME1 LINE L1 -792 5374 4579 2464 76 3 0 chr6 18236941 18237243 -164177999 - AluSg SINE Alu -7 303 1 5293 221 62 54 chr6 18237243 18237811 -164177431 - L1ME1 LINE L1 -1587 4579 3968 2138 113 0 0 chr6 18237811 18238134 -164177108 + AluSq SINE Alu 1 323 0 5293 221 62 54 chr6 18238134 18238509 -164176733 - L1ME1 LINE L1 -2198 3968 3598 440 309 63 34 chr6 18238957 18239263 -164175979 - L1ME LINE L1 -5876 654 65 1771 204 165 45 chr6 18239417 18240157 -164175085 - L1MC5 LINE L1 -640 7321 6478 546 307 90 26 chr6 18240292 18240869 -164174373 - HAL1b LINE L1 -525 823 210 21 71 0 0 chr6 18240938 18240980 -164174262 + AT_rich Low_complexity Low_complexity 1 42 0 50 31 0 0 chr6 18241041 18241105 -164174137 + AT_rich Low_complexity Low_complexity 1 64 0 184 216 54 68 chr6 18241625 18241699 -164173543 - MIR SINE MIR -159 103 31 198 246 0 0 chr6 18242429 18242490 -164172752 + (TA)n Simple_repeat Simple_repeat 2 62 0 346 288 130 40 chr6 18243771 18243948 -164171294 - MIR SINE MIR -50 212 20 315 294 196 39 chr6 18245785 18245989 -164169253 - MIR SINE MIR -12 250 15 4129 172 61 45 chr6 18246269 18247107 -164168135 + MER21B LTR ERV1 2 852 -11 6508 119 80 51 chr6 18247264 18247907 -164167335 + Tigger3b DNA MER2_type 1 624 -2404 1690 192 0 7 chr6 18247907 18248214 -164167028 - AluJo SINE Alu 0 305 1 6508 119 80 51 chr6 18248214 18248417 -164166825 + Tigger3b DNA MER2_type 624 820 -2208 230 81 27 0 chr6 18248417 18248454 -164166788 + (CTCA)n Simple_repeat Simple_repeat 1 38 0 6508 119 80 51 chr6 18248454 18248523 -164166719 + Tigger3b DNA MER2_type 820 886 -2142 2176 121 10 0 chr6 18248523 18248828 -164166414 - AluSx SINE Alu -4 308 1 6508 119 80 51 chr6 18248828 18249105 -164166137 + Tigger3b DNA MER2_type 886 1231 0 1183 240 83 52 chr6 18249770 18250215 -164165027 + MLT1L LTR MaLR 126 584 -31 2203 110 7 0 chr6 18250246 18250555 -164164687 - AluSp SINE Alu -2 311 1 2184 222 14 34 chr6 18250561 18251115 -164164127 - MER74A LTR ERVL -12 546 4 1342 113 43 0 chr6 18251200 18251386 -164163856 + AluJb SINE Alu 105 298 -14 702 282 127 50 chr6 18251533 18251973 -164163269 - MLT1J LTR MaLR -35 476 3 2360 81 0 13 chr6 18252018 18252326 -164162916 - AluY SINE Alu -7 304 1 192 186 53 0 chr6 18252892 18253005 -164162237 + (TA)n Simple_repeat Simple_repeat 2 120 0 407 217 8 42 chr6 18253229 18253349 -164161893 - MIR SINE MIR 0 262 147 2096 123 0 0 chr6 18253624 18253933 -164161309 - AluSx SINE Alu 0 309 1 2320 108 16 90 chr6 18254484 18254917 -164160325 + L1MA2 LINE L1 5902 6302 -2 1318 282 82 28 chr6 18256157 18256621 -164158621 - LTR33 LTR ERVL -2 519 31 2410 134 48 70 chr6 18306980 18307326 -164107916 - Tigger2a DNA MER2_type -2275 433 98 231 36 0 0 chr6 18307326 18307354 -164107888 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2410 134 48 70 chr6 18307354 18307448 -164107794 - Tigger2a DNA MER2_type -2610 98 3 1024 127 7 0 chr6 18307458 18307608 -164107634 + AluJb SINE Alu 1 151 -161 2280 98 0 7 chr6 18307697 18307992 -164107250 - AluSg SINE Alu -17 293 1 1601 153 51 37 chr6 18308660 18308955 -164106287 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr6 18310884 18310909 -164104333 + AT_rich Low_complexity Low_complexity 1 25 0 2489 84 0 0 chr6 18312271 18312582 -164102660 - AluY SINE Alu 0 311 1 572 124 277 22 chr6 18313505 18313642 -164101600 + MLT1C LTR MaLR 6 177 -290 460 192 0 0 chr6 18313647 18313725 -164101517 + FAM SINE Alu 97 174 -11 1614 171 26 55 chr6 18313806 18314115 -164101127 + AluJb SINE Alu 1 300 -12 943 197 67 31 chr6 18314115 18314338 -164100904 + MLT1C LTR MaLR 237 467 0 2316 99 0 0 chr6 18314579 18314881 -164100361 + AluSc SINE Alu 1 302 -7 263 324 152 58 chr6 18315183 18315366 -164099876 + L2 LINE L2 1271 1435 -1879 2361 112 16 48 chr6 18315366 18315742 -164099500 + THE1B LTR MaLR 1 364 0 263 324 152 58 chr6 18315742 18316261 -164098981 + L2 LINE L2 1435 2039 -1275 186 300 0 0 chr6 18316294 18316344 -164098898 + L2 LINE L2 2218 2267 -1047 342 324 28 0 chr6 18316903 18317011 -164098231 + L2 LINE L2 3203 3313 0 294 326 63 78 chr6 18317015 18317522 -164097720 + L2 LINE L2 2687 3181 -91 226 337 60 0 chr6 18318870 18318953 -164096289 + MIR SINE MIR 67 154 -108 1607 164 32 4 chr6 18319667 18319948 -164095294 + AluJo SINE Alu 1 289 -23 387 169 0 0 chr6 18319956 18320027 -164095215 + (TA)n Simple_repeat Simple_repeat 2 72 0 384 236 71 44 chr6 18320034 18320216 -164095026 - HAL1 LINE L1 0 2507 2321 * 527 328 58 9 chr6 18320209 18320538 -164094704 - L1ME3A LINE L1 -230 5940 5596 1289 167 0 17 chr6 18320596 18320785 -164094457 - L1MA3 LINE L1 -1 6304 6113 180 0 0 0 chr6 18320785 18320805 -164094437 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1895 149 7 0 chr6 18320805 18321087 -164094155 - AluSx SINE Alu -28 284 1 1289 167 0 17 chr6 18321087 18321129 -164094113 - L1MA3 LINE L1 -190 6115 6076 1128 273 191 71 chr6 18321303 18321572 -164093670 + L2 LINE L2 1822 2057 -1257 372 132 0 0 chr6 18321572 18321625 -164093617 - AluJb SINE Alu -84 218 166 1128 273 191 71 chr6 18321625 18322186 -164093056 + L2 LINE L2 2057 2810 -504 304 289 37 70 chr6 18322338 18322525 -164092717 + L2 LINE L2 3112 3292 -21 2173 103 3 13 chr6 18322693 18322993 -164092249 - AluSx SINE Alu -15 297 1 2015 138 27 0 chr6 18323465 18323763 -164091479 + AluSx SINE Alu 3 308 -4 473 210 74 80 chr6 18324503 18324665 -164090577 + MIR SINE MIR 23 183 -79 2701 174 154 24 chr6 18324893 18325147 -164090095 + MLT1E1 LTR MaLR 1 221 -433 1885 133 3 36 chr6 18325147 18325502 -164089740 - AluSx SINE Alu 0 312 1 2701 174 154 24 chr6 18325502 18325826 -164089416 + MLT1E1 LTR MaLR 221 654 0 302 209 45 27 chr6 18325926 18326036 -164089206 - L1MEc LINE L1 -3238 2977 2866 * 2146 251 62 19 chr6 18326029 18327787 -164087455 - L1MEc LINE L1 -4423 1973 35 2518 53 0 7 chr6 18328651 18328952 -164086290 + AluY SINE Alu 1 299 -12 990 269 155 5 chr6 18329169 18329596 -164085646 + L2 LINE L2 2823 3313 0 1242 144 45 0 chr6 18329909 18330110 -164085132 + MER2 DNA MER2_type 1 210 -135 232 265 20 0 chr6 18330152 18330201 -164085041 + MER2 DNA MER2_type 283 332 -13 252 0 0 0 chr6 18330834 18330862 -164084380 + (TC)n Simple_repeat Simple_repeat 1 28 0 1714 150 32 42 chr6 18331316 18331629 -164083613 - AluJb SINE Alu -2 310 1 2488 57 7 3 chr6 18331745 18332046 -164083196 + AluY SINE Alu 1 302 -9 326 221 96 85 chr6 18332235 18332315 -164082927 - MIR SINE MIR -38 224 146 2366 102 0 3 chr6 18332315 18332628 -164082614 - AluSx SINE Alu 0 312 1 326 221 96 85 chr6 18332628 18332759 -164082483 - MIR SINE MIR -116 146 4 185 263 53 26 chr6 18332759 18332834 -164082408 + MER5A DNA MER1_type 12 88 -101 302 336 4 13 chr6 18332775 18332943 -164082299 - MER5A DNA MER1_type -19 160 4 2240 81 14 0 chr6 18334176 18334461 -164080781 + AluSq SINE Alu 3 291 -22 28 0 0 0 chr6 18334461 18334489 -164080753 + AT_rich Low_complexity Low_complexity 1 28 0 1510 206 42 13 chr6 18334868 18335178 -164080064 - MER58B DNA MER1_type -2 339 21 630 189 68 20 chr6 18335992 18336140 -164079102 + MER63 DNA MER1_type 904 1058 -4 5668 128 31 36 chr6 18336173 18336887 -164078355 - MER49 LTR ERV1 0 923 212 2131 108 3 3 chr6 18336887 18337183 -164078059 - AluSx SINE Alu -8 304 9 5668 128 31 36 chr6 18337183 18337395 -164077847 - MER49 LTR ERV1 -711 212 1 369 274 198 25 chr6 18337951 18338108 -164077134 + MIR3 SINE MIR 1 184 -24 26 64 0 0 chr6 18338109 18338156 -164077086 + AT_rich Low_complexity Low_complexity 1 47 0 282 56 0 0 chr6 18339119 18339155 -164076087 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 504 341 12 12 chr6 18339565 18339732 -164075510 - MIR3 SINE MIR -21 187 21 346 258 125 17 chr6 18339933 18340053 -164075189 + MER94 DNA DNA 1 133 -1 2406 92 0 0 chr6 18340345 18340648 -164074594 - AluSg SINE Alu -7 303 1 564 278 41 45 chr6 18341008 18341274 -164073968 + MER97c DNA MER1_type? 810 1074 -16 337 245 18 110 chr6 18341351 18341514 -164073728 + L2 LINE L2 2592 2739 -575 801 272 8 56 chr6 18341549 18341685 -164073557 + MIR SINE MIR 25 145 -117 1894 143 61 18 chr6 18341685 18342014 -164073228 - MER2 DNA MER2_type -1 343 1 801 272 8 56 chr6 18342014 18342127 -164073115 + MIR SINE MIR 145 262 0 2198 110 3 7 chr6 18342142 18342442 -164072800 + AluSp SINE Alu 1 299 -14 2215 75 4 0 chr6 18342444 18342724 -164072518 + AluY SINE Alu 22 302 -9 223 302 71 93 chr6 18342767 18343187 -164072055 + L2 LINE L2 2832 3242 -30 225 135 39 77 chr6 18343188 18343240 -164072002 - L1M3f LINE L1 -4213 1115 1066 184 315 0 19 chr6 18343746 18343800 -164071442 + L3b LINE CR1 1512 1564 -19 213 136 0 23 chr6 18344041 18344085 -164071157 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 1214 188 9 5 chr6 18344364 18344587 -164070655 - AluJb SINE Alu -2 310 87 1891 130 0 11 chr6 18345460 18345737 -164069505 - AluSq SINE Alu -1 312 39 215 176 103 0 chr6 18345753 18345821 -164069421 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 362 343 96 23 chr6 18346464 18346910 -164068332 + L2 LINE L2 2524 3004 -309 774 200 117 0 chr6 18347020 18347165 -164068077 + FAM SINE Alu 5 166 -9 2378 82 0 0 chr6 18347268 18347560 -164067682 + AluSg SINE Alu 3 294 -16 642 265 56 67 chr6 18348047 18348433 -164066809 + L1MC4a LINE L1 5537 5796 -325 3440 172 103 28 chr6 18348459 18348505 -164066737 - L1MB8 LINE L1 -1 6177 6136 1271 191 164 37 chr6 18348505 18348829 -164066413 - MLT1A1 LTR MaLR 0 365 1 3440 172 103 28 chr6 18348829 18349274 -164065968 - L1MB8 LINE L1 -42 6136 5607 2520 73 0 0 chr6 18349274 18349577 -164065665 + AluY SINE Alu 1 303 -8 3440 172 103 28 chr6 18349577 18349839 -164065403 - L1MB8 LINE L1 -571 5607 5366 309 210 63 112 chr6 18349885 18349952 -164065290 + L1ME4a LINE L1 5984 6053 -68 1756 206 7 51 chr6 18349952 18350365 -164064877 - MLT2C1 LTR ERVL -2 395 1 309 210 63 112 chr6 18350365 18350413 -164064829 + L1ME4a LINE L1 6053 6093 -28 922 135 0 0 chr6 18350413 18350546 -164064696 - FLAM_C SINE Alu 0 133 1 309 210 63 112 chr6 18350546 18350572 -164064670 + L1ME4a LINE L1 6093 6119 -2 322 179 0 0 chr6 18350710 18350766 -164064476 - MLT1E2 LTR MaLR 0 626 571 3946 114 0 20 chr6 18350766 18351039 -164064203 - MER1A DNA MER1_type -2173 527 269 2439 82 0 3 chr6 18351039 18351344 -164063898 - AluSq SINE Alu -9 304 1 3946 114 0 20 chr6 18351344 18351606 -164063636 - MER1A DNA MER1_type -2431 269 3 204 40 0 0 chr6 18352151 18352176 -164063066 + (A)n Simple_repeat Simple_repeat 1 25 0 2253 114 0 0 chr6 18353226 18353515 -164061727 - AluSx SINE Alu -20 292 4 2509 194 52 40 chr6 18353574 18353843 -164061399 - L1MD3 LINE L1 0 8042 7778 2319 102 0 0 chr6 18353843 18354147 -164061095 - AluSq SINE Alu -9 304 1 2509 194 52 40 chr6 18354147 18354446 -164060796 - L1MD3 LINE L1 -264 7778 7480 2118 107 7 17 chr6 18354446 18354745 -164060497 - AluSx SINE Alu -4 308 13 2509 194 52 40 chr6 18354745 18354828 -164060414 - L1MD3 LINE L1 -562 7480 7400 226 273 104 22 chr6 18354835 18355018 -164060224 - L1MB8 LINE L1 -949 5197 5000 * 492 216 72 12 chr6 18355006 18355238 -164060004 + L1ME4a LINE L1 5820 6119 -2 601 291 64 13 chr6 18355534 18355768 -164059474 + MIR SINE MIR 17 262 0 195 100 0 0 chr6 18356106 18356136 -164059106 + (TG)n Simple_repeat Simple_repeat 2 31 0 2137 124 13 0 chr6 18356202 18356501 -164058741 + AluSq SINE Alu 3 305 -8 2124 116 82 25 chr6 18357705 18358058 -164057184 + THE1C LTR MaLR 3 375 0 238 333 13 0 chr6 18358176 18358254 -164056988 - L2 LINE L2 -1 3312 3234 815 86 103 0 chr6 18358282 18358399 -164056843 + L1MA6 LINE L1 6171 6299 -1 2144 138 0 0 chr6 18358642 18358939 -164056303 - AluSg SINE Alu -13 297 1 303 233 0 35 chr6 18359091 18359177 -164056065 + A-rich Low_complexity Low_complexity 2 84 0 564 230 79 0 chr6 18360242 18360407 -164054835 + MER5B DNA MER1_type 1 178 0 26 50 0 0 chr6 18360766 18360806 -164054436 + AT_rich Low_complexity Low_complexity 1 40 0 1889 151 6 19 chr6 18361494 18361805 -164053437 + AluJb SINE Alu 1 307 -5 735 227 0 0 chr6 18361814 18361946 -164053296 + FLAM_C SINE Alu 2 133 0 333 0 0 0 chr6 18362813 18362850 -164052392 + (TA)n Simple_repeat Simple_repeat 2 38 0 953 120 8 15 chr6 18362861 18362994 -164052248 - FLAM_C SINE Alu 0 133 2 262 276 61 10 chr6 18363620 18363718 -164051524 - MIR3 SINE MIR -7 201 99 285 292 25 75 chr6 18363971 18364047 -164051195 - MIR SINE MIR -108 154 89 2401 86 0 0 chr6 18364047 18364351 -164050891 + AluSx SINE Alu 2 305 -7 285 292 25 75 chr6 18364351 18364435 -164050807 - MIR SINE MIR -173 89 2 278 303 56 41 chr6 18364628 18364823 -164050419 + L1ME4a LINE L1 5835 6032 -89 21 82 0 0 chr6 18364866 18364915 -164050327 + AT_rich Low_complexity Low_complexity 1 49 0 1942 129 4 4 chr6 18365475 18365789 -164049453 - AluJb SINE Alu 0 316 3 1508 184 3 70 chr6 18366138 18366341 -164048901 - AluJo SINE Alu -7 305 131 2603 47 0 0 chr6 18366341 18366642 -164048600 + AluY SINE Alu 1 301 -10 1508 184 3 70 chr6 18366642 18366765 -164048477 - AluJo SINE Alu -181 131 1 216 255 0 0 chr6 18367184 18367235 -164048007 + L2 LINE L2 3149 3199 -73 1583 153 33 4 chr6 18368451 18368693 -164046549 - AluJb SINE Alu -15 297 49 918 66 33 0 chr6 18368695 18368817 -164046425 + Charlie3 DNA MER1_type 375 500 -2210 * 3600 77 4 11 chr6 18368811 18369279 -164045963 + Charlie3 DNA MER1_type 2242 2706 -4 236 261 210 17 chr6 18369405 18369524 -164045718 + MIR SINE MIR 66 207 -55 14734 178 18 23 chr6 18369535 18373681 -164041561 + L1PA16 LINE L1 912 5021 -1848 2433 84 0 0 chr6 18373681 18373980 -164041262 + AluY SINE Alu 1 299 -12 14734 178 18 23 chr6 18373980 18375819 -164039423 + L1PA16 LINE L1 5021 6867 -2 2332 91 7 0 chr6 18376269 18376566 -164038676 + AluY SINE Alu 1 299 -12 192 254 32 0 chr6 18376947 18377010 -164038232 - MIR SINE MIR -123 139 75 22 0 0 0 chr6 18377517 18377539 -164037703 + AT_rich Low_complexity Low_complexity 1 22 0 2371 78 3 0 chr6 18378027 18378323 -164036919 + AluY SINE Alu 1 297 -14 5797 126 29 3 chr6 18378389 18379574 -164035668 - L1PB1 LINE L1 0 6151 4938 11263 102 60 6 chr6 18379615 18379660 -164035582 - L1PBa LINE L1 -3738 3124 3083 2103 107 0 4 chr6 18379660 18379991 -164035251 - AluSg SINE Alu 0 330 1 11263 102 60 6 chr6 18379991 18382768 -164032474 - L1PBa LINE L1 -3779 3083 4 250 256 73 0 chr6 18382845 18382927 -164032315 - L1ME LINE L1 -223 5898 5811 6382 96 0 14 chr6 18383835 18385082 -164030160 - L1PA13 LINE L1 0 6163 4924 795 154 51 69 chr6 18385084 18385225 -164030017 + MER5A DNA MER1_type 8 147 -42 1841 169 0 3 chr6 18385225 18385520 -164029722 - AluJb SINE Alu -18 294 1 795 154 51 69 chr6 18385520 18385553 -164029689 + MER5A DNA MER1_type 147 179 -10 2221 85 0 7 chr6 18385778 18386072 -164029170 + AluSc SINE Alu 1 292 -17 21 71 0 0 chr6 18386279 18386321 -164028921 + AT_rich Low_complexity Low_complexity 1 42 0 3479 208 62 29 chr6 18386357 18387174 -164028068 - MER21B LTR ERV1 -1 862 19 414 188 10 89 chr6 18387171 18387272 -164027970 - MER21B LTR ERV1 -756 107 15 * 33 18 0 36 chr6 18387363 18387402 -164027840 + AT_rich Low_complexity Low_complexity 1 39 -14 2484 68 0 0 chr6 18387402 18387697 -164027545 - AluY SINE Alu -16 295 1 33 18 0 36 chr6 18387697 18387712 -164027530 + AT_rich Low_complexity Low_complexity 39 53 0 2111 134 0 0 chr6 18387727 18388026 -164027216 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr6 18388370 18388392 -164026850 + AT_rich Low_complexity Low_complexity 1 22 0 215 30 0 30 chr6 18388701 18388734 -164026508 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 283 249 84 89 chr6 18389629 18389987 -164025255 - HAL1 LINE L1 -868 1639 1284 262 284 52 26 chr6 18390842 18390958 -164024284 - L1M4 LINE L1 -2228 3918 3800 378 329 147 35 chr6 18390970 18391521 -164023721 - MLT1L LTR MaLR -2 613 1 234 0 0 0 chr6 18391549 18391575 -164023667 + (TG)n Simple_repeat Simple_repeat 2 27 0 922 116 0 0 chr6 18391575 18391696 -164023546 - AluSp SINE Alu -191 122 2 2400 86 0 0 chr6 18391696 18391997 -164023245 - AluSq SINE Alu -7 306 6 922 136 30 12 chr6 18392370 18392539 -164022703 - L1MD1 LINE L1 -44 6198 6027 514 153 59 34 chr6 18392554 18392672 -164022570 - L1MB4 LINE L1 -2 6178 6058 680 231 0 0 chr6 18393203 18393350 -164021892 + L2 LINE L2 614 760 -2554 199 274 27 41 chr6 18393363 18393436 -164021806 + L2 LINE L2 1196 1267 -2047 3298 261 84 51 chr6 18393480 18394235 -164021007 + L2 LINE L2 1560 2289 -1024 270 0 0 0 chr6 18394235 18394265 -164020977 + (CA)n Simple_repeat Simple_repeat 2 31 0 2307 145 20 0 chr6 18394265 18394617 -164020625 - L1PB3 LINE L1 -1 6153 5795 3298 261 84 51 chr6 18394617 18395295 -164019947 + L2 LINE L2 2289 2943 -370 2406 90 0 3 chr6 18395295 18395606 -164019636 - AluSg SINE Alu 0 310 1 1809 161 0 3 chr6 18395607 18395893 -164019349 - AluJo SINE Alu -17 295 11 3298 261 84 51 chr6 18395893 18396140 -164019102 + L2 LINE L2 2942 3313 0 1838 158 79 20 chr6 18396733 18397087 -164018155 + THE1C LTR MaLR 1 375 0 517 331 56 60 chr6 18397441 18397873 -164017369 - L2 LINE L2 -7 3265 2836 868 238 16 0 chr6 18397991 18398176 -164017066 + MER5A DNA MER1_type 1 188 -1 190 314 29 29 chr6 18398366 18398436 -164016806 - MER5A DNA MER1_type -5 184 115 454 323 79 18 chr6 18398676 18398840 -164016402 + MER5B DNA MER1_type 3 176 -2 2069 112 32 0 chr6 18399217 18399502 -164015740 + AluSx SINE Alu 1 294 -18 421 222 6 29 chr6 18399502 18399673 -164015569 + GA-rich Low_complexity Low_complexity 1 167 0 642 132 26 26 chr6 18399884 18399998 -164015244 + AluSg/x SINE Alu 195 308 -1 1160 156 47 19 chr6 18400008 18400219 -164015023 + MSTB LTR MaLR 210 426 0 818 146 8 23 chr6 18400437 18400567 -164014675 - FLAM_C SINE Alu -14 129 2 2018 155 0 16 chr6 18401043 18401360 -164013882 + AluSx SINE Alu 1 312 0 1548 134 0 13 chr6 18451378 18451609 -163963633 + AluJb SINE Alu 59 286 -26 345 100 0 0 chr6 18451615 18451665 -163963577 + (TA)n Simple_repeat Simple_repeat 1 50 0 491 323 25 10 chr6 18451667 18451865 -163963377 - L1ME LINE L1 -346 5775 5575 771 219 88 0 chr6 18452324 18452484 -163962758 + MER5B DNA MER1_type 3 176 -2 181 264 69 35 chr6 18452509 18452596 -163962646 - L2 LINE L2 -46 3226 3137 269 255 0 10 chr6 18452647 18452749 -163962493 + (TA)n Simple_repeat Simple_repeat 1 101 0 378 0 0 0 chr6 18453048 18453090 -163962152 + (TA)n Simple_repeat Simple_repeat 2 43 0 1829 142 7 29 chr6 18453526 18453835 -163961407 + AluJo SINE Alu 1 302 -10 349 303 103 23 chr6 18455233 18455408 -163959834 - MIR SINE MIR -40 222 34 970 165 23 65 chr6 18455691 18455763 -163959479 - MSTB LTR MaLR 0 426 353 2332 110 3 0 chr6 18455763 18456073 -163959169 + AluSx SINE Alu 1 311 -1 970 165 23 65 chr6 18456073 18456351 -163958891 - MSTB LTR MaLR -73 353 1 1902 159 36 3 chr6 18456686 18456988 -163958254 + AluSx SINE Alu 1 312 0 223 250 0 33 chr6 18458117 18458177 -163957065 + G-rich Low_complexity Low_complexity 1 58 0 1233 234 81 31 chr6 18458398 18458783 -163956459 + MLT1C LTR MaLR 6 409 -58 2340 107 0 0 chr6 18458783 18459093 -163956149 - AluSg SINE Alu 0 310 1 2371 97 6 0 chr6 18459124 18459435 -163955807 + AluSp SINE Alu 1 313 0 1335 139 0 0 chr6 18459440 18459627 -163955615 + AluSc SINE Alu 7 193 -116 263 305 128 21 chr6 18459972 18460113 -163955129 - MIR3 SINE MIR -9 199 44 1100 188 0 5 chr6 18460114 18460306 -163954936 + AluSg/x SINE Alu 113 303 -7 344 277 0 0 chr6 18460307 18460390 -163954852 - MIR SINE MIR -1 261 179 1883 145 21 0 chr6 18461302 18461584 -163953658 - AluSx SINE Alu -24 288 1 681 240 136 50 chr6 18462027 18462285 -163952957 + MLT1J LTR MaLR 223 502 -9 317 276 51 39 chr6 18462315 18462471 -163952771 - MLT1L LTR MaLR 0 615 458 243 212 152 0 chr6 18462497 18462563 -163952679 - MLT1L LTR MaLR -222 393 318 1499 217 26 37 chr6 18463759 18464137 -163951105 + MLT1A2 LTR MaLR 1 374 0 2329 167 59 133 chr6 18464312 18465097 -163950145 - LTR8A LTR ERV1 0 727 1 2880 190 36 122 chr6 18465183 18465568 -163949674 - L1MC5 LINE L1 -214 7747 7330 2391 100 0 0 chr6 18465568 18465877 -163949365 - AluSq SINE Alu -4 309 1 2880 190 36 122 chr6 18465877 18466174 -163949068 - L1MC5 LINE L1 -631 7330 7009 1600 187 76 15 chr6 18466174 18466516 -163948726 - MLT1A1 LTR MaLR 0 365 3 2880 190 36 122 chr6 18466516 18466755 -163948487 - L1MC5 LINE L1 -952 7009 6751 2569 75 0 0 chr6 18466755 18467063 -163948179 - AluSx SINE Alu -4 308 1 2880 190 36 122 chr6 18467063 18467511 -163947731 - L1MC5 LINE L1 -1210 6751 6476 2656 162 49 126 chr6 18467549 18468301 -163946941 + LTR8A LTR ERV1 34 727 0 1909 162 0 16 chr6 18468895 18469209 -163946033 + AluJb SINE Alu 1 309 -3 4653 113 45 49 chr6 18469235 18469432 -163945810 - MER4E LTR ERV1 0 779 583 2319 113 0 6 chr6 18469432 18469743 -163945499 + AluSq SINE Alu 1 309 -4 4653 113 45 49 chr6 18469743 18470327 -163944915 - MER4E LTR ERV1 -196 583 1 3020 157 48 66 chr6 18470373 18470977 -163944265 + LTR59 LTR ERV1 1 593 -4 2587 282 68 39 chr6 18470984 18472474 -163942768 - L1M4 LINE L1 -745 5401 3857 2133 77 4 0 chr6 18472474 18472735 -163942507 + AluSg SINE Alu 35 296 -14 2587 282 68 39 chr6 18472735 18472883 -163942359 - L1M4 LINE L1 -2289 3857 3715 2913 273 146 46 chr6 18472883 18473198 -163942044 - L2 LINE L2 -2 3311 3029 2396 67 3 3 chr6 18473198 18473495 -163941747 + AluY SINE Alu 1 297 -14 2913 273 146 46 chr6 18473495 18474215 -163941027 - L2 LINE L2 -284 3029 2383 2380 104 0 0 chr6 18474215 18474522 -163940720 + AluY SINE Alu 1 307 -4 2913 273 146 46 chr6 18474522 18475066 -163940176 - L2 LINE L2 -930 2383 1895 1769 176 3 3 chr6 18475066 18475361 -163939881 - AluJb SINE Alu -17 295 1 2913 273 146 46 chr6 18475361 18475535 -163939707 - L2 LINE L2 -1418 1895 1370 571 290 73 47 chr6 18475638 18476404 -163938838 - L1MEd LINE L1 -2958 3171 2386 242 263 0 0 chr6 18476375 18476474 -163938768 - L1MEd LINE L1 -3963 2166 2068 * 549 286 42 67 chr6 18476638 18476994 -163938248 - L1MEd LINE L1 -4433 1696 1350 355 225 11 34 chr6 18477155 18477244 -163937998 + MLT1H1 LTR MaLR 463 549 -6 231 250 0 17 chr6 18477311 18477371 -163937871 + MLT1H1-int LTR MaLR 33 91 -1644 2023 167 22 6 chr6 18477506 18477865 -163937377 - MLT1A1 LTR MaLR 0 365 1 3914 196 84 9 chr6 18478631 18479416 -163935826 + MER21B LTR ERV1 1 844 -19 1824 158 14 14 chr6 18479418 18479579 -163935663 - AluJo SINE Alu -14 298 135 2149 107 0 47 chr6 18479579 18479897 -163935345 - AluSg SINE Alu -7 303 1 1824 158 14 14 chr6 18479897 18480032 -163935210 - AluJo SINE Alu -176 136 2 2313 110 0 19 chr6 18480130 18480448 -163934794 + AluSx SINE Alu 1 312 0 2276 119 0 0 chr6 18480559 18480862 -163934380 - AluSx SINE Alu -9 303 1 392 253 99 78 chr6 18480862 18481146 -163934096 + MLT1H1-int LTR MaLR 1078 1370 -1 372 191 0 0 chr6 18481164 18481227 -163934015 + Tigger2 DNA MER2_type 1 63 -2655 2488 81 0 3 chr6 18481251 18481560 -163933682 - AluSq SINE Alu -5 308 1 2675 122 43 32 chr6 18481570 18482011 -163933231 + Tigger2 DNA MER2_type 2273 2718 0 278 279 0 0 chr6 18482018 18482079 -163933163 + MLT1F LTR MaLR 23 83 -459 2146 117 10 0 chr6 18482188 18482486 -163932756 - AluSx SINE Alu -11 301 1 342 194 39 48 chr6 18482661 18482764 -163932478 + MLT1H1 LTR MaLR 454 555 0 652 286 37 38 chr6 18482778 18483146 -163932096 - L1MEd LINE L1 -4892 1227 976 2184 104 0 22 chr6 18483146 18483463 -163931779 - AluSx SINE Alu -2 310 1 652 286 37 38 chr6 18483463 18483544 -163931698 - L1MEd LINE L1 -5143 976 896 1440 179 51 34 chr6 18483736 18484087 -163931155 - L1MB4 LINE L1 0 6180 5824 411 354 29 10 chr6 18484078 18484287 -163930955 - L1MEd LINE L1 -5455 664 452 * 1627 157 34 62 chr6 18484332 18484656 -163930586 - MLT1B LTR MaLR 0 390 76 1873 79 24 12 chr6 18484900 18485152 -163930090 - AluSx SINE Alu 0 312 58 812 207 62 76 chr6 18485152 18485442 -163929800 + pTR5 LTR ERV1 743 1028 -1410 3300 191 174 1 chr6 18485629 18486332 -163928910 + LTR12 LTR ERV1 3 826 0 642 142 117 8 chr6 18486332 18486452 -163928790 + LTR12 LTR ERV1 582 714 0 390 197 3 9 chr6 18486453 18486533 -163928709 - AluS SINE Alu -243 60 1 750 107 116 8 chr6 18486825 18486946 -163928296 - AluJo SINE Alu -176 136 3 2247 97 14 0 chr6 18488113 18488403 -163926839 - AluSp SINE Alu -19 294 1 2495 69 0 7 chr6 18488413 18488718 -163926524 - AluY SINE Alu -8 303 1 2373 77 0 3 chr6 18488907 18489207 -163926035 - AluY SINE Alu -12 299 1 262 179 64 51 chr6 18489812 18489890 -163925352 + MIR3 SINE MIR 129 207 -1 4461 128 40 75 chr6 18490225 18491076 -163924166 - LTR12 LTR ERV1 -1 825 5 437 161 31 31 chr6 18491100 18491261 -163923981 + G-rich Low_complexity Low_complexity 2 162 0 1359 167 184 40 chr6 18491263 18491665 -163923577 - pTR5 LTR ERV1 -1237 1201 742 1586 287 59 30 chr6 18491874 18492379 -163922863 + MLT1G1 LTR MaLR 76 595 0 714 201 0 8 chr6 18492424 18492558 -163922684 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr6 18492573 18492597 -163922645 + AT_rich Low_complexity Low_complexity 1 24 0 303 380 38 11 chr6 18492648 18492832 -163922410 + MER5A DNA MER1_type 1 189 0 1001 154 0 0 chr6 18492833 18492982 -163922260 - AluSc SINE Alu -88 221 73 216 0 0 0 chr6 18492982 18493006 -163922236 + (A)n Simple_repeat Simple_repeat 1 24 0 736 223 60 0 chr6 18493025 18493191 -163922051 - MER5B DNA MER1_type -2 176 1 2140 112 0 16 chr6 18493657 18493970 -163921272 + AluY SINE Alu 1 308 -3 1745 188 0 13 chr6 18494062 18494376 -163920866 - AluJb SINE Alu -2 310 1 22 35 0 0 chr6 18494891 18494920 -163920322 + AT_rich Low_complexity Low_complexity 1 29 0 466 281 54 75 chr6 18495250 18495638 -163919604 + MLT1J2 LTR MaLR 67 446 -4 2488 66 16 0 chr6 18496165 18496468 -163918774 + AluY SINE Alu 1 308 -3 2017 87 42 52 chr6 18496620 18496932 -163918310 - AluSx SINE Alu 0 309 1 2346 81 0 36 chr6 18498027 18498336 -163916906 + AluY SINE Alu 1 298 -13 398 273 128 6 chr6 18498573 18498745 -163916497 + MIR SINE MIR 49 241 -21 500 268 49 5 chr6 18499078 18499238 -163916004 - MIR SINE MIR -62 146 9 1179 161 0 70 chr6 18499375 18499605 -163915637 + MER20B DNA MER1_type 1 214 -5 2436 71 3 3 chr6 18499810 18500105 -163915137 + AluY SINE Alu 1 295 -16 27 0 0 0 chr6 18500280 18500307 -163914935 + AT_rich Low_complexity Low_complexity 1 27 0 6103 107 4 0 chr6 18500307 18501340 -163913902 - L1PA16 LINE L1 -9 6157 5142 1725 98 128 22 chr6 18501471 18501745 -163913497 + AluY SINE Alu 1 303 -8 505 139 0 47 chr6 18501757 18501843 -163913399 + L1MD2 LINE L1 6257 6338 -21 190 105 18 70 chr6 18501848 18501905 -163913337 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 2330 108 0 0 chr6 18501907 18502213 -163913029 - AluSx SINE Alu -6 306 1 262 212 145 50 chr6 18502448 18502627 -163912615 - ORSL DNA AcHobo 0 275 80 32 0 0 0 chr6 18502700 18502732 -163912510 + AT_rich Low_complexity Low_complexity 1 32 0 234 299 123 75 chr6 18503713 18504021 -163911221 + LTR16C LTR ERVL 168 490 -1 4048 146 6 2 chr6 18504937 18505569 -163909673 - MER41B LTR ERV1 0 635 1 521 300 67 10 chr6 18505914 18506420 -163908822 + L1M3 LINE L1 4839 5457 -711 354 193 243 7 chr6 18506442 18506582 -163908660 - MER5A DNA MER1_type -6 183 11 751 194 74 25 chr6 18506587 18506829 -163908413 + L1ME LINE L1 5526 5779 -342 2777 91 18 61 chr6 18506833 18506924 -163908318 + LTR56 LTR ERV1 1 94 -373 1925 130 82 23 chr6 18506924 18507278 -163907964 + THE1C LTR MaLR 1 375 0 2777 91 18 61 chr6 18507278 18507396 -163907846 + LTR56 LTR ERV1 94 216 -251 1541 83 69 5 chr6 18507396 18507612 -163907630 + MER30 DNA MER1_type 1 230 0 2777 91 18 61 chr6 18507612 18507747 -163907495 + LTR56 LTR ERV1 216 321 -146 2333 98 0 0 chr6 18507747 18508043 -163907199 + AluSq SINE Alu 1 296 -17 2777 91 18 61 chr6 18508043 18508184 -163907058 + LTR56 LTR ERV1 321 467 0 300 27 0 0 chr6 18508305 18508342 -163906900 + (TG)n Simple_repeat Simple_repeat 2 38 0 324 0 0 0 chr6 18508491 18508527 -163906715 + (CA)n Simple_repeat Simple_repeat 1 36 0 225 224 41 0 chr6 18508792 18508841 -163906401 + MLT1J LTR MaLR 435 485 -26 2675 144 6 45 chr6 18508870 18509120 -163906122 - LTR26B LTR ERV1 0 531 308 2214 112 56 34 chr6 18509120 18509476 -163905766 - THE1B LTR MaLR 0 364 1 2675 144 6 45 chr6 18509476 18509711 -163905531 - LTR26B LTR ERV1 -223 308 65 867 108 0 0 chr6 18509711 18509822 -163905420 - 7SLRNA srpRNA srpRNA -7 313 203 557 91 0 0 chr6 18509823 18509900 -163905342 - LTR26B LTR ERV1 -453 78 2 242 257 218 10 chr6 18509983 18510084 -163905158 + Charlie8 DNA MER1_type 103 224 -2193 642 281 156 85 chr6 18510742 18511319 -163903923 + L3 LINE CR1 908 1525 -52 419 296 10 77 chr6 18512368 18512467 -163902775 + MIR SINE MIR 79 161 -101 2147 116 3 0 chr6 18512467 18512806 -163902436 - AluSp SINE Alu 0 340 1 419 296 10 77 chr6 18512806 18512901 -163902341 + MIR SINE MIR 161 261 -1 3366 212 93 8 chr6 18512948 18513032 -163902210 - MER69B DNA AcHobo -1300 1226 1151 1582 190 16 19 chr6 18513032 18513343 -163901899 + AluJo SINE Alu 1 310 -2 3366 212 93 8 chr6 18513343 18514349 -163900893 - MER69B DNA AcHobo -1375 1151 10 2081 105 3 48 chr6 18514572 18514886 -163900356 + AluJb SINE Alu 1 300 -12 2323 107 3 0 chr6 18515367 18515676 -163899566 + AluSg SINE Alu 1 310 0 962 113 0 0 chr6 18515691 18515833 -163899409 + L1PA10 LINE L1 6026 6167 -1 573 266 55 126 chr6 18516168 18516372 -163898870 - L2 LINE L2 0 3313 3096 1961 115 24 10 chr6 18516372 18516660 -163898582 + AluSx SINE Alu 1 292 -20 573 266 55 126 chr6 18516660 18517122 -163898120 - L2 LINE L2 -217 3096 2710 2556 62 0 3 chr6 18517126 18517435 -163897807 - AluY SINE Alu -3 308 1 2157 79 11 4 chr6 18517435 18517715 -163897527 - AluSc SINE Alu -12 297 16 1223 174 0 10 chr6 18517715 18517896 -163897346 + AluJb SINE Alu 107 287 -25 477 0 0 0 chr6 18517896 18517949 -163897293 + (CA)n Simple_repeat Simple_repeat 2 54 0 1223 174 0 10 chr6 18517949 18517974 -163897268 + AluJb SINE Alu 287 311 -1 386 252 65 43 chr6 18518042 18518181 -163897061 - L2 LINE L2 -614 2700 2559 641 223 108 39 chr6 18518265 18518525 -163896717 + MLT1H LTR MaLR 144 421 -128 1719 161 52 17 chr6 18518740 18519031 -163896211 - AluJo SINE Alu -7 305 5 496 81 11 0 chr6 18519671 18519758 -163895484 + L1PB2 LINE L1 6063 6150 -1 545 338 47 22 chr6 18519784 18520131 -163895111 - LTR16A LTR ERVL -97 353 1 2328 92 3 0 chr6 18521102 18521397 -163893845 + AluSp SINE Alu 1 296 -17 2408 107 0 0 chr6 18522732 18523041 -163892201 + AluSc SINE Alu 1 309 0 357 294 68 14 chr6 18523373 18523519 -163891723 - MIR3 SINE MIR -25 183 30 1550 183 47 10 chr6 18523694 18523994 -163891248 + AluJo SINE Alu 1 311 -1 2159 100 35 3 chr6 18524549 18524838 -163890404 - AluSq SINE Alu -15 298 1 1667 154 0 19 chr6 18524851 18525118 -163890124 - AluSx SINE Alu -4 308 47 665 124 150 0 chr6 18525118 18525231 -163890011 - FRAM SINE Alu -48 128 1 494 282 90 65 chr6 18525603 18525880 -163889362 + MLT1H LTR MaLR 23 306 -243 520 268 67 40 chr6 18525933 18526479 -163888763 - L1MEd LINE L1 -4781 1603 1022 1764 256 84 40 chr6 18527214 18527636 -163887606 + L1MEc LINE L1 1535 1937 -4278 203 59 0 29 chr6 18527636 18527670 -163887572 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1955 98 76 0 chr6 18527672 18527936 -163887306 - AluSq SINE Alu -29 284 1 1764 256 84 40 chr6 18527936 18528065 -163887177 + L1MEc LINE L1 1937 2059 -4156 201 39 0 0 chr6 18528065 18528091 -163887151 + (TGG)n Simple_repeat Simple_repeat 2 27 0 1764 256 84 40 chr6 18528091 18528927 -163886315 + L1MEc LINE L1 2059 2949 -3266 10346 141 23 19 chr6 18528946 18529829 -163885413 + L1PA13 LINE L1 3510 4388 -1775 351 0 0 0 chr6 18529829 18529868 -163885374 + (CA)n Simple_repeat Simple_repeat 1 39 0 10346 141 23 19 chr6 18529868 18530793 -163884449 + L1PA13 LINE L1 4388 5343 -820 2060 141 7 0 chr6 18530793 18531084 -163884158 + AluSx SINE Alu 1 293 -19 10346 141 23 19 chr6 18531084 18531909 -163883333 + L1PA13 LINE L1 5343 6163 0 445 203 0 24 chr6 18531910 18532033 -163883209 + L1MEc LINE L1 3884 4003 -2212 * 3981 193 36 67 chr6 18532029 18532223 -163883019 - L1MC/D LINE L1 -743 5403 5205 1973 140 24 0 chr6 18532223 18532516 -163882726 - AluJb SINE Alu -12 300 1 3981 193 36 67 chr6 18532516 18532877 -163882365 - L1MC/D LINE L1 -941 5205 4834 1934 174 0 3 chr6 18532877 18533175 -163882067 - AluJb SINE Alu -15 297 1 3981 193 36 67 chr6 18533175 18533307 -163881935 - L1MC/D LINE L1 -1312 4834 4699 2118 133 0 3 chr6 18533307 18533609 -163881633 - AluSg SINE Alu -9 301 1 3981 193 36 67 chr6 18533609 18534326 -163880916 - L1MC/D LINE L1 -1447 4699 4114 24 32 0 0 chr6 18534341 18534372 -163880870 + AT_rich Low_complexity Low_complexity 1 31 0 569 134 50 17 chr6 18534395 18534514 -163880728 + AluSg/x SINE Alu 181 303 -6 2941 132 0 9 chr6 18535328 18535782 -163879460 - L1PA16 LINE L1 0 6166 5717 1369 258 133 31 chr6 18536179 18536674 -163878568 + L2 LINE L2 2431 3032 -281 222 37 0 0 chr6 18536674 18536701 -163878541 + (TG)n Simple_repeat Simple_repeat 2 28 0 1369 258 133 31 chr6 18536701 18536955 -163878287 + L2 LINE L2 3032 3259 -54 607 157 112 51 chr6 18536959 18537137 -163878105 - MER53 DNA DNA 0 189 1 4410 168 24 12 chr6 18537222 18538218 -163877024 + L1PB4 LINE L1 4402 5433 -723 1850 164 3 14 chr6 18538218 18538510 -163876732 + AluJo SINE Alu 6 294 -18 4410 168 24 12 chr6 18538510 18539243 -163875999 + L1PB4 LINE L1 5433 6156 0 500 272 43 0 chr6 18539812 18539974 -163875268 + MARNA DNA Mariner 15 183 -403 302 240 13 0 chr6 18540003 18540078 -163875164 - MIR SINE MIR -179 83 8 1064 182 5 15 chr6 18540090 18540293 -163874949 + MLT1A1 LTR MaLR 165 365 0 1158 232 28 55 chr6 18540296 18540658 -163874584 - L1M4 LINE L1 -6038 504 153 2103 154 0 0 chr6 18540678 18540983 -163874259 - AluJb SINE Alu -7 305 1 815 182 0 0 chr6 18540984 18541132 -163874110 - L1M4 LINE L1 -6379 163 16 840 149 316 11 chr6 18541257 18541349 -163873893 - AluSg1 SINE Alu -28 281 218 1895 137 38 3 chr6 18541349 18541642 -163873600 - AluSg SINE Alu -7 303 1 840 149 316 11 chr6 18541642 18541723 -163873519 - AluSg1 SINE Alu -91 218 55 823 162 30 24 chr6 18542434 18542601 -163872641 - L1M4 LINE L1 -6359 183 16 362 253 0 40 chr6 18542650 18542749 -163872493 - L1MC4 LINE L1 -1339 6703 6609 2068 125 0 4 chr6 18544728 18545067 -163870175 - AluSg SINE Alu 0 338 1 368 251 131 76 chr6 18545152 18545602 -163869640 + L1ME1 LINE L1 1298 1722 -4999 261 0 0 0 chr6 18545602 18545631 -163869611 + (CA)n Simple_repeat Simple_repeat 2 30 0 368 251 131 76 chr6 18545631 18546151 -163869091 + L1ME1 LINE L1 1722 2423 -4298 2439 81 0 0 chr6 18546151 18546447 -163868795 - AluSx SINE Alu -16 296 1 368 251 131 76 chr6 18546447 18546642 -163868600 + L1ME1 LINE L1 2423 2606 -4115 1530 260 74 27 chr6 18546706 18546995 -163868247 + L1ME1 LINE L1 2556 2830 -3710 1651 211 7 3 chr6 18546995 18547299 -163867943 + AluJb SINE Alu 1 305 -7 1530 260 74 27 chr6 18547299 18547790 -163867452 + L1ME1 LINE L1 2830 3373 -3167 1852 223 31 41 chr6 18547792 18548347 -163866895 + L1ME1 LINE L1 5968 6516 -44 2374 46 39 0 chr6 18548498 18548781 -163866461 + AluY SINE Alu 1 294 -17 550 339 32 0 chr6 18548794 18549045 -163866197 + L1MEc LINE L1 850 1108 -6030 796 247 60 39 chr6 18549599 18549752 -163865490 + L1MEc LINE L1 1377 1525 -5422 1929 130 6 22 chr6 18549752 18550068 -163865174 - AluSx SINE Alu -1 311 1 796 247 60 39 chr6 18550068 18550433 -163864809 + L1MEc LINE L1 1525 1966 -4981 1653 327 82 37 chr6 18550437 18551422 -163863820 + ERVL LTR ERVL 2719 3658 -1996 2723 29 0 0 chr6 18551422 18551729 -163863513 + AluYa5 SINE Alu 1 307 -4 1653 327 82 37 chr6 18551729 18552092 -163863150 + ERVL LTR ERVL 3658 4136 -1518 1890 145 134 31 chr6 18552092 18552479 -163862763 - MSTA LTR MaLR -1 427 1 1653 327 82 37 chr6 18552479 18552539 -163862703 + ERVL LTR ERVL 4136 4192 -1462 332 206 93 21 chr6 18552907 18553004 -163862238 + MSTA LTR MaLR 123 226 -202 2313 227 111 29 chr6 18553111 18553839 -163861403 - MER21B LTR ERV1 -62 801 14 514 345 42 41 chr6 18553878 18554340 -163860902 + ERVL LTR ERVL 4781 5246 -518 2070 140 7 94 chr6 18554340 18554775 -163860467 + MLT2C1 LTR ERVL 1 397 0 514 345 42 41 chr6 18554775 18554854 -163860388 + ERVL LTR ERVL 5246 5323 -441 1117 254 64 15 chr6 18555015 18555345 -163859897 + LTR16A LTR ERVL 1 346 -104 951 204 65 18 chr6 18555390 18555496 -163859746 + L1ME3 LINE L1 5871 5971 -191 396 0 0 0 chr6 18555496 18555540 -163859702 + (TG)n Simple_repeat Simple_repeat 2 45 0 951 204 65 18 chr6 18555540 18555712 -163859530 + L1ME3 LINE L1 5971 6162 0 303 313 40 0 chr6 18555744 18555843 -163859399 + MIR3 SINE MIR 58 160 -48 36 23 0 0 chr6 18555990 18556033 -163859209 + AT_rich Low_complexity Low_complexity 1 43 0 372 284 59 54 chr6 18556415 18556585 -163858657 + MLT1K LTR MaLR 332 505 -83 2417 168 16 12 chr6 18556585 18557009 -163858233 - MSTB LTR MaLR 0 426 1 372 284 59 54 chr6 18557009 18557077 -163858165 + MLT1K LTR MaLR 505 571 -17 2232 94 40 0 chr6 18557080 18557379 -163857863 - AluY SINE Alu 0 311 1 368 277 31 8 chr6 18557402 18557532 -163857710 + L1ME4a LINE L1 5493 5625 -496 523 192 158 0 chr6 18557553 18557673 -163857569 - L2 LINE L2 0 3313 3175 4004 114 44 8 chr6 18557688 18558176 -163857066 + LTR9 LTR ERV1 3 517 -95 180 0 0 0 chr6 18558176 18558196 -163857046 + (TTCTC)n Simple_repeat Simple_repeat 2 21 0 4004 114 44 8 chr6 18558196 18558296 -163856946 + LTR9 LTR ERV1 517 612 0 5329 134 10 35 chr6 18558318 18559446 -163855796 + L1PA15 LINE L1 4231 5258 -908 2216 105 0 3 chr6 18559446 18559741 -163855501 + AluSx SINE Alu 5 298 -14 5329 134 10 35 chr6 18559741 18560626 -163854616 + L1PA15 LINE L1 5258 6163 -3 597 251 128 37 chr6 18560621 18560632 -163854610 + L1ME4a LINE L1 5677 5686 -435 * 2436 86 0 0 chr6 18560632 18560933 -163854309 + AluSq SINE Alu 1 301 -12 270 0 0 0 chr6 18560933 18560963 -163854279 + (TA)n Simple_repeat Simple_repeat 2 31 0 597 251 128 37 chr6 18560963 18561356 -163853886 + L1ME4a LINE L1 5685 6119 -2 25 0 0 0 chr6 18565585 18565610 -163849632 + GC_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr6 18565638 18565687 -163849555 + GC_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr6 18565789 18565816 -163849426 + GC_rich Low_complexity Low_complexity 1 27 0 249 175 16 32 chr6 18566119 18566182 -163849060 + C-rich Low_complexity Low_complexity 2 63 0 24 32 0 0 chr6 18567311 18567342 -163847900 + GC_rich Low_complexity Low_complexity 1 31 0 2377 88 3 0 chr6 18568127 18568423 -163846819 - AluSq SINE Alu -16 297 1 276 318 38 14 chr6 18568442 18568583 -163846659 - MIR3 SINE MIR -4 204 59 22 0 0 0 chr6 18570892 18570914 -163844328 + AT_rich Low_complexity Low_complexity 1 22 0 2433 68 3 26 chr6 18572227 18572538 -163842704 + AluY SINE Alu 1 304 -7 432 309 56 34 chr6 18572677 18572910 -163842332 - MIR SINE MIR -5 257 20 202 308 100 0 chr6 18573116 18573236 -163842006 - MIR SINE MIR -14 248 117 24 0 0 0 chr6 18575848 18575872 -163839370 + AT_rich Low_complexity Low_complexity 1 24 0 198 103 0 0 chr6 18576601 18576630 -163838612 + (CTG)n Simple_repeat Simple_repeat 3 31 0 203 184 0 0 chr6 18576739 18576777 -163838465 + (CTG)n Simple_repeat Simple_repeat 3 40 0 22 0 0 0 chr6 18578556 18578578 -163836664 + AT_rich Low_complexity Low_complexity 1 22 0 2511 73 0 0 chr6 18578985 18579287 -163835955 - AluY SINE Alu -9 302 1 223 294 55 18 chr6 18579309 18579418 -163835824 + MIR SINE MIR 125 237 -25 2017 92 27 44 chr6 18579433 18579727 -163835515 + AluY SINE Alu 1 289 -22 322 188 0 0 chr6 18579729 18579793 -163835449 + L1MC4 LINE L1 6640 6703 -1339 2226 105 3 25 chr6 18579986 18580300 -163834942 - AluSx SINE Alu -1 311 5 1548 185 7 27 chr6 18580892 18581071 -163834171 - AluJb SINE Alu -1 311 139 2143 106 0 0 chr6 18581071 18581344 -163833898 - AluSg SINE Alu -37 273 1 1548 185 7 27 chr6 18581344 18581461 -163833781 - AluJb SINE Alu -173 139 21 1909 124 5 93 chr6 18583328 18583482 -163831760 - L1MA7 LINE L1 0 6291 6125 1860 146 9 35 chr6 18583482 18583798 -163831444 - AluJb SINE Alu -4 308 1 1909 124 5 93 chr6 18583798 18584021 -163831221 - L1MA7 LINE L1 -166 6125 5947 1701 151 63 6 chr6 18584103 18584234 -163831008 - L1MA7 LINE L1 -360 5931 5809 198 0 0 0 chr6 18584234 18584256 -163830986 + (TG)n Simple_repeat Simple_repeat 1 22 0 1701 151 63 6 chr6 18584256 18584441 -163830801 - L1MA7 LINE L1 -482 5809 5597 190 230 223 50 chr6 18584865 18585004 -163830238 - MIR SINE MIR -47 215 53 2156 186 26 26 chr6 18585014 18585083 -163830159 - MSTB LTR MaLR -2 424 356 2395 86 0 13 chr6 18585083 18585396 -163829846 + AluY SINE Alu 1 309 -2 2156 186 26 26 chr6 18585396 18585750 -163829492 - MSTB LTR MaLR -69 357 1 2520 55 3 7 chr6 18586168 18586476 -163828766 - AluY SINE Alu -4 307 1 956 128 0 0 chr6 18586734 18586867 -163828375 - FLAM_C SINE Alu 0 133 1 186 218 333 39 chr6 18587019 18587175 -163828067 - MIR SINE MIR -8 254 53 1484 113 154 30 chr6 18587751 18588017 -163827225 + AluSg1 SINE Alu 1 299 -10 1019 191 0 0 chr6 18588017 18588195 -163827047 + AluJb SINE Alu 134 311 -1 185 103 77 0 chr6 18588206 18588245 -163826997 + G-rich Low_complexity Low_complexity 5 46 0 377 209 23 8 chr6 18588246 18588375 -163826867 + GA-rich Low_complexity Low_complexity 5 135 0 3053 116 15 48 chr6 18588377 18588724 -163826518 + L1MA4 LINE L1 5796 6122 -178 2499 51 0 0 chr6 18588724 18589016 -163826226 + AluY SINE Alu 1 292 -19 3053 116 15 48 chr6 18589016 18589187 -163826055 + L1MA4 LINE L1 6122 6297 -3 1842 156 11 3 chr6 18589193 18589475 -163825767 + AluJb SINE Alu 3 286 -26 2219 103 0 3 chr6 18589506 18589797 -163825445 - AluSc SINE Alu -19 290 1 2634 54 0 10 chr6 18590792 18591106 -163824136 - AluY SINE Alu 0 311 1 2254 113 0 3 chr6 18591538 18591838 -163823404 - AluSq SINE Alu -13 300 2 2534 66 3 0 chr6 18592167 18592470 -163822772 + AluSp SINE Alu 1 304 -9 2408 74 0 43 chr6 18592897 18593222 -163822020 - AluY SINE Alu 0 311 1 286 234 0 2 chr6 18593582 18593647 -163821595 - MLT1H1 LTR MaLR 0 590 532 2255 122 0 6 chr6 18593647 18593959 -163821283 + AluSx SINE Alu 1 310 -2 2437 97 0 3 chr6 18593971 18594282 -163820960 - AluSq SINE Alu -1 312 3 1856 148 33 7 chr6 18594301 18594605 -163820637 - AluSx SINE Alu 0 312 1 683 301 59 34 chr6 18594608 18595017 -163820225 - MLT1H1 LTR MaLR -57 533 10 22 0 0 0 chr6 18595100 18595122 -163820120 + AT_rich Low_complexity Low_complexity 1 22 0 2365 106 0 0 chr6 18595247 18595559 -163819683 - AluSx SINE Alu 0 312 1 246 313 123 25 chr6 18595813 18595976 -163819266 + MIR3 SINE MIR 1 179 -29 534 236 211 5 chr6 18597135 18597334 -163817908 + MIR SINE MIR 9 248 -14 2246 114 3 0 chr6 18597341 18597640 -163817602 - AluSp SINE Alu -13 300 1 312 316 0 0 chr6 18597644 18597742 -163817500 - L2 LINE L2 -985 2329 2232 653 199 58 53 chr6 18597744 18597772 -163817470 + MLT1I LTR MaLR 1 27 -382 2132 129 3 0 chr6 18597772 18598066 -163817176 - AluSq SINE Alu -18 295 1 653 199 58 53 chr6 18598066 18598208 -163817034 + MLT1I LTR MaLR 27 172 -237 2350 84 3 7 chr6 18598221 18598517 -163816725 + AluSp SINE Alu 1 295 -18 1924 134 28 3 chr6 18598531 18598821 -163816421 + AluSg1 SINE Alu 1 297 -12 415 246 85 15 chr6 18598837 18598967 -163816275 + MLT1I LTR MaLR 258 396 -13 240 259 86 72 chr6 18598989 18599128 -163816114 - L2 LINE L2 -1097 2217 2077 1260 159 103 43 chr6 18599129 18599290 -163815952 + MLT1A1 LTR MaLR 1 151 -214 1735 173 18 0 chr6 18599290 18599567 -163815675 + AluJo SINE Alu 4 285 -27 1260 159 103 43 chr6 18599567 18599707 -163815535 + MLT1A1 LTR MaLR 151 320 -45 864 107 0 0 chr6 18599710 18599822 -163815420 - AluSg/x SINE Alu -113 199 88 286 103 0 0 chr6 18599824 18599863 -163815379 + MLT1A1 LTR MaLR 327 365 0 1140 260 125 13 chr6 18599892 18600435 -163814807 - L2 LINE L2 -1293 2021 1418 2105 127 14 0 chr6 18600441 18600733 -163814509 - AluSx SINE Alu -16 296 1 2440 74 0 7 chr6 18600758 18601068 -163814174 - AluY SINE Alu -1 310 3 1754 127 37 40 chr6 18601070 18601369 -163813873 - AluSg SINE Alu -12 298 1 1029 291 40 24 chr6 18601458 18601880 -163813362 + L2 LINE L2 2805 3233 -80 402 139 0 14 chr6 18601998 18602070 -163813172 + AluSp/q SINE Alu 235 305 -8 242 125 0 0 chr6 18602070 18602110 -163813132 - Tigger1 DNA MER2_type -170 2248 2209 * 755 202 42 12 chr6 18602097 18602265 -163812977 - Tigger1 DNA MER2_type -2245 173 1 227 232 195 0 chr6 18602266 18602348 -163812894 + MER20B DNA MER1_type 686 783 0 198 308 31 23 chr6 18602368 18602498 -163812744 + L2 LINE L2 2259 2389 -925 496 188 119 0 chr6 18602765 18602823 -163812419 + MLT2B3 LTR ERVL 442 492 -62 457 88 25 0 chr6 18602823 18602903 -163812339 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 496 188 119 0 chr6 18602903 18602945 -163812297 + MLT2B3 LTR ERVL 492 554 0 5490 223 54 22 chr6 18602945 18602981 -163812261 + HERVL-B3 LTR ERVL 1 34 -5620 2176 112 7 0 chr6 18602981 18603275 -163811967 - AluSp SINE Alu -17 296 1 5490 223 54 22 chr6 18603275 18603540 -163811702 + HERVL-B3 LTR ERVL 34 289 -5365 4820 98 1 52 chr6 18603540 18604265 -163810977 - LTR12 LTR ERV1 0 688 1 5490 223 54 22 chr6 18604265 18605287 -163809955 + HERVL-B3 LTR ERVL 289 1368 -4286 367 264 160 0 chr6 18605449 18605593 -163809649 - MIR3 SINE MIR -1 207 41 183 42 0 0 chr6 18605607 18605631 -163809611 + (CA)n Simple_repeat Simple_repeat 2 25 0 2019 130 27 0 chr6 18605731 18606030 -163809212 + AluSx SINE Alu 1 307 -5 383 248 103 0 chr6 18606071 18606188 -163809054 + MIR SINE MIR 82 210 -52 373 268 67 22 chr6 18606190 18606290 -163808952 - MLT1L LTR MaLR -2 613 519 2437 88 0 3 chr6 18606290 18606595 -163808647 + AluY SINE Alu 1 304 -7 373 268 67 22 chr6 18606595 18606757 -163808485 - MLT1L LTR MaLR -96 519 228 1802 161 20 13 chr6 18608345 18608643 -163806599 - AluJb SINE Alu -12 300 1 186 293 98 24 chr6 18608707 18608789 -163806453 - L2 LINE L2 -32 3240 3153 263 329 37 0 chr6 18609002 18609084 -163806158 + MIR SINE MIR 98 182 -80 2399 84 0 3 chr6 18609774 18610070 -163805172 - AluSc SINE Alu -14 295 1 1033 179 0 16 chr6 18610087 18610271 -163804971 + FRAM SINE Alu 1 176 0 1158 120 0 0 chr6 18610546 18610704 -163804538 - AluSg/x SINE Alu -17 295 138 985 320 128 16 chr6 18610816 18611569 -163803673 + L3 LINE CR1 619 1455 -122 2316 94 0 0 chr6 18611769 18612057 -163803185 + AluSg SINE Alu 1 288 -22 1836 161 7 0 chr6 18612689 18612987 -163802255 - AluJo SINE Alu -12 300 1 1141 132 0 0 chr6 18612995 18613154 -163802088 - AluSg/x SINE Alu -20 290 132 1484 113 154 30 chr6 18613154 18613420 -163801822 - AluSg1 SINE Alu -10 299 1 186 218 333 39 chr6 18613996 18614152 -163801090 + MIR SINE MIR 53 254 -8 934 135 0 0 chr6 18614304 18614437 -163800805 + FLAM_C SINE Alu 1 133 0 2351 74 10 3 chr6 18614695 18614992 -163800250 + AluSc SINE Alu 1 299 -10 2593 62 0 3 chr6 18614992 18615301 -163799941 + AluY SINE Alu 1 308 -3 260 257 62 124 chr6 18615305 18615708 -163799534 + L2 LINE L2 2710 3087 -226 2059 129 0 14 chr6 18615940 18616260 -163798982 - AluSq SINE Alu 0 316 1 326 0 68 0 chr6 18616267 18616311 -163798931 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 1576 197 3 19 chr6 18616334 18616643 -163798599 - AluJo SINE Alu -8 304 1 2248 93 7 0 chr6 18616809 18617099 -163798143 - AluSc SINE Alu -17 292 1 2083 108 3 48 chr6 18617580 18617894 -163797348 - AluJb SINE Alu -12 300 1 420 182 45 0 chr6 18618117 18618205 -163797037 + MER69 DNA AcHobo 10 101 -2425 789 226 100 42 chr6 18618308 18618569 -163796673 + MER21B LTR ERV1 526 801 -62 370 206 93 21 chr6 18618676 18618773 -163796469 - MSTA LTR MaLR -202 226 123 2098 321 84 39 chr6 18619122 18619201 -163796041 - HERVL LTR ERVL -1442 4212 4138 1930 145 134 31 chr6 18619201 18619588 -163795654 + MSTA LTR MaLR 1 427 -1 2098 321 84 39 chr6 18619588 18619951 -163795291 - HERVL LTR ERVL -1516 4138 3793 2695 45 0 0 chr6 18619951 18620260 -163794982 - AluYa5 SINE Alu -2 309 1 2098 321 84 39 chr6 18620260 18621257 -163793985 - HERVL LTR ERVL -1861 3793 2707 887 238 60 55 chr6 18621259 18621614 -163793628 - L1MEc LINE L1 -4952 1263 788 1946 130 6 22 chr6 18621614 18621930 -163793312 + AluSx SINE Alu 1 311 -1 887 238 60 55 chr6 18621930 18622093 -163793149 - L1MEc LINE L1 -5427 788 627 605 330 32 16 chr6 18622572 18622887 -163792355 - L1MEc LINE L1 -5969 427 108 2422 46 39 0 chr6 18622900 18623183 -163792059 - AluY SINE Alu -17 294 1 2055 218 32 43 chr6 18623334 18623889 -163791353 - L1ME1 LINE L1 -44 6191 5643 1750 262 74 27 chr6 18623891 18624382 -163790860 - L1ME1 LINE L1 -3167 3048 2505 1628 211 7 3 chr6 18624382 18624686 -163790556 - AluJb SINE Alu -7 305 1 1750 262 74 27 chr6 18624686 18624977 -163790265 - L1ME1 LINE L1 -3710 2505 2229 275 237 232 16 chr6 18625039 18625233 -163790009 - L1ME1 LINE L1 -4115 2281 2046 2403 77 0 35 chr6 18625234 18625544 -163789698 + AluSx SINE Alu 1 299 -13 340 249 89 109 chr6 18625827 18626063 -163789179 + L1MEd LINE L1 538 777 -5342 1702 154 14 20 chr6 18626063 18626392 -163788850 - AluSx SINE Alu 0 327 1 340 249 89 109 chr6 18626392 18626533 -163788709 + L1MEd LINE L1 777 919 -5200 1692 189 0 3 chr6 18626533 18626830 -163788412 + AluJo SINE Alu 1 296 -16 340 249 89 109 chr6 18626830 18627020 -163788222 + L1MEd LINE L1 919 1097 -5022 2189 75 0 34 chr6 18627022 18627362 -163787880 + AluY SINE Alu 1 330 0 2306 98 3 0 chr6 18627376 18627672 -163787570 + AluSq SINE Alu 1 297 -16 6582 238 34 47 chr6 18628387 18630600 -163784642 + HERVFH21 LTR ERV1 304 2412 -4117 11703 161 19 7 chr6 18630726 18633008 -163782234 + HERVFH21 LTR ERV1 2290 4665 -1864 2079 128 14 0 chr6 18633192 18633481 -163781761 - AluSg SINE Alu -17 293 1 181 299 30 30 chr6 18633493 18633560 -163781682 - L2 LINE L2 -540 2774 2708 2222 102 7 0 chr6 18633560 18633853 -163781389 - AluSx SINE Alu -17 295 1 322 333 102 50 chr6 18633880 18634243 -163780999 + L1MEd LINE L1 1 382 -5737 2395 208 29 11 chr6 18634276 18634728 -163780514 + L1ME2 LINE L1 5526 6014 -154 2128 98 3 55 chr6 18634728 18635053 -163780189 + AluY SINE Alu 2 309 -2 2395 208 29 11 chr6 18635053 18635210 -163780032 + L1ME2 LINE L1 6014 6167 -1 338 316 20 59 chr6 18635545 18635697 -163779545 - L2 LINE L2 0 3313 3168 2385 103 0 0 chr6 18635749 18636060 -163779182 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr6 18636185 18636207 -163779035 + AT_rich Low_complexity Low_complexity 1 22 0 683 301 59 34 chr6 18636290 18636699 -163778543 + MLT1H1 LTR MaLR 10 533 -57 2321 81 3 10 chr6 18636702 18636998 -163778244 + AluSp SINE Alu 2 295 -18 1942 128 28 3 chr6 18637012 18637301 -163777941 + AluSg1 SINE Alu 1 296 -13 415 246 85 15 chr6 18637317 18637447 -163777795 + MLT1I LTR MaLR 258 396 -13 240 259 86 72 chr6 18637469 18637608 -163777634 - L2 LINE L2 -1097 2217 2077 1279 156 103 43 chr6 18637609 18637770 -163777472 + MLT1A1 LTR MaLR 1 151 -214 1735 173 18 0 chr6 18637770 18638047 -163777195 + AluJo SINE Alu 4 285 -27 1279 156 103 43 chr6 18638047 18638187 -163777055 + MLT1A1 LTR MaLR 151 320 -45 864 107 0 0 chr6 18638190 18638302 -163776940 - AluSg/x SINE Alu -113 197 86 286 103 0 0 chr6 18638304 18638343 -163776899 + MLT1A1 LTR MaLR 336 374 0 1172 256 125 13 chr6 18638372 18638915 -163776327 - L2 LINE L2 -1293 2021 1418 2105 127 14 0 chr6 18638921 18639213 -163776029 - AluSx SINE Alu -16 296 1 1755 74 4 9 chr6 18639238 18639469 -163775773 - AluY SINE Alu -1 310 81 2222 114 0 7 chr6 18639846 18640154 -163775088 - AluSx SINE Alu -6 306 1 268 312 104 32 chr6 18640496 18640746 -163774496 + MLT1L LTR MaLR 302 569 -46 2265 108 0 0 chr6 18640757 18641064 -163774178 - AluY SINE Alu -4 307 1 2438 74 6 10 chr6 18641141 18641453 -163773789 - AluY SINE Alu 0 311 1 2243 128 0 0 chr6 18641475 18641780 -163773462 - AluSx SINE Alu -5 307 3 2254 248 13 6 chr6 18641828 18642376 -163772866 - L1ME1 LINE L1 -140 6026 5475 24 67 0 0 chr6 18643006 18643051 -163772191 + AT_rich Low_complexity Low_complexity 1 45 0 2473 64 3 3 chr6 18643062 18643358 -163771884 - AluSx SINE Alu -16 296 1 1556 164 25 29 chr6 18643848 18644122 -163771120 - AluJo SINE Alu -29 283 11 1979 80 53 4 chr6 18644230 18644492 -163770750 - AluSc SINE Alu -15 294 20 317 314 31 19 chr6 18644685 18644844 -163770398 - L1MC4a LINE L1 -1941 5867 5707 673 254 65 14 chr6 18644868 18645085 -163770157 - MIR SINE MIR -11 251 24 2113 313 26 26 chr6 18646603 18647631 -163767611 + HERVFH21 LTR ERV1 5502 6529 0 801 179 105 83 chr6 18647661 18648024 -163767218 + LTR21B LTR ERV1 68 438 0 739 278 76 4 chr6 18648165 18648485 -163766757 + MLT1I LTR MaLR 21 363 -46 2104 51 94 0 chr6 18649296 18649551 -163765691 + AluY SINE Alu 1 279 -32 341 58 19 0 chr6 18649551 18649603 -163765639 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 227 278 72 10 chr6 18649655 18649752 -163765490 + L2 LINE L2 1241 1343 -1971 * 1023 291 40 24 chr6 18649748 18650170 -163765072 - L2 LINE L2 -80 3233 2805 2518 61 0 0 chr6 18650259 18650556 -163764686 + AluY SINE Alu 1 297 -14 1365 95 0 0 chr6 18650557 18650725 -163764517 + AluSg/x SINE Alu 132 299 -11 1596 150 44 47 chr6 18650901 18651036 -163764206 - MER44D DNA MER2_type -1882 609 475 2103 102 7 14 chr6 18651036 18651330 -163763912 + AluSx SINE Alu 1 292 -20 1596 150 44 47 chr6 18651330 18651434 -163763808 - MER44D DNA MER2_type -2016 475 372 180 0 0 0 chr6 18651434 18651454 -163763788 + (TC)n Simple_repeat Simple_repeat 1 20 0 1596 150 44 47 chr6 18651454 18651552 -163763690 - MER44D DNA MER2_type -2119 372 2 249 231 15 0 chr6 18651556 18651621 -163763621 - L1M4c LINE L1 -5012 1372 1307 26 0 0 0 chr6 18651624 18651650 -163763592 + AT_rich Low_complexity Low_complexity 1 26 0 1115 129 8 133 chr6 18651806 18651845 -163763397 - L1MA7 LINE L1 -115 6176 6134 1862 142 9 41 chr6 18651845 18652163 -163763079 - AluJb SINE Alu -4 308 1 1115 129 8 133 chr6 18652163 18652386 -163762856 - L1MA7 LINE L1 -157 6134 5947 1717 151 63 6 chr6 18652468 18652599 -163762643 - L1MA7 LINE L1 -360 5931 5809 198 0 0 0 chr6 18652599 18652621 -163762621 + (TG)n Simple_repeat Simple_repeat 1 22 0 1717 151 63 6 chr6 18652621 18652806 -163762436 - L1MA7 LINE L1 -482 5809 5597 190 230 223 50 chr6 18653230 18653369 -163761873 - MIR SINE MIR -47 215 53 2103 191 26 26 chr6 18653379 18653448 -163761794 - MSTB LTR MaLR -2 424 356 2368 90 0 13 chr6 18653448 18653760 -163761482 + AluY SINE Alu 1 308 -3 2103 191 26 26 chr6 18653760 18654114 -163761128 - MSTB LTR MaLR -69 357 1 2486 68 3 7 chr6 18654532 18654840 -163760402 - AluY SINE Alu -4 307 1 186 43 0 0 chr6 18655171 18655194 -163760048 + (TG)n Simple_repeat Simple_repeat 2 24 0 2123 100 3 21 chr6 18655194 18655483 -163759759 - AluY SINE Alu -27 284 1 2089 122 10 0 chr6 18656060 18656356 -163758886 + AluSx SINE Alu 1 299 -13 1195 165 78 0 chr6 18656366 18656596 -163758646 + L1MB3 LINE L1 5893 6140 -43 1451 103 5 9 chr6 18656599 18656812 -163758430 + AluY SINE Alu 1 212 -99 465 98 0 0 chr6 18656912 18656973 -163758269 - Alu SINE Alu -248 62 2 1140 200 102 98 chr6 18656976 18657192 -163758050 - L1M4 LINE L1 -861 5285 5071 2271 113 3 0 chr6 18657192 18657492 -163757750 - AluSx SINE Alu -11 301 1 1140 200 102 98 chr6 18657492 18657764 -163757478 - L1M4 LINE L1 -1075 5071 4795 731 255 64 15 chr6 18657775 18657979 -163757263 + MER58A DNA MER1_type 11 224 0 1138 186 32 20 chr6 18657990 18658238 -163757004 - L1M4 LINE L1 -1357 4789 4539 1164 176 83 31 chr6 18658330 18658495 -163756747 + MER2 DNA MER2_type 41 196 -149 186 43 0 0 chr6 18658495 18658518 -163756724 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 918 177 6 12 chr6 18658519 18658683 -163756559 - FRAM SINE Alu -2 164 2 1164 176 83 31 chr6 18658683 18658805 -163756437 + MER2 DNA MER2_type 195 345 0 4027 215 41 71 chr6 18658805 18658967 -163756275 - L1M4 LINE L1 -1603 4543 4378 2407 80 6 13 chr6 18658967 18659279 -163755963 + AluY SINE Alu 1 310 -1 4027 215 41 71 chr6 18659279 18660676 -163754566 - L1M4 LINE L1 -1768 4378 3031 1160 219 29 0 chr6 18660679 18660921 -163754321 + Cheshire DNA MER1_type 1550 1798 -622 2147 174 61 9 chr6 18660924 18661367 -163753875 + Cheshire DNA MER1_type 1955 2420 0 406 184 22 50 chr6 18661603 18661782 -163753460 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 249 195 39 0 chr6 18661798 18661875 -163753367 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 6167 94 4 34 chr6 18661896 18662022 -163753220 - L1PB2 LINE L1 -4 6147 6019 2323 82 0 3 chr6 18662022 18662314 -163752928 - AluY SINE Alu -19 292 2 6167 94 4 34 chr6 18662314 18662569 -163752673 - L1PB2 LINE L1 -132 6019 5758 2373 103 0 0 chr6 18662569 18662869 -163752373 - AluSq SINE Alu -13 300 1 6167 94 4 34 chr6 18662869 18663449 -163751793 - L1PB2 LINE L1 -393 5758 5214 601 254 30 5 chr6 18663515 18663716 -163751526 - MER69 DNA AcHobo -165 2361 2156 * 2697 249 27 47 chr6 18663714 18663818 -163751424 - MER69 DNA AcHobo -1591 935 830 2326 105 0 10 chr6 18663818 18664131 -163751111 + AluSx SINE Alu 1 310 -2 2697 249 27 47 chr6 18664131 18664378 -163750864 - MER69 DNA AcHobo -1696 830 580 1678 183 3 14 chr6 18664378 18664696 -163750546 - AluJb SINE Alu 0 315 1 2697 249 27 47 chr6 18664696 18665050 -163750192 - MER69 DNA AcHobo -1946 580 242 526 176 73 39 chr6 18665187 18665392 -163749850 - Charlie5 DNA MER1_type 0 2618 2407 862 226 5 16 chr6 18665392 18665582 -163749660 - MER69 DNA AcHobo -2318 208 21 266 53 26 0 chr6 18665606 18665644 -163749598 + MADE1 DNA Mariner 42 80 0 1863 133 61 0 chr6 18665769 18666048 -163749194 + AluSq SINE Alu 1 296 -17 2033 121 0 21 chr6 18666052 18666364 -163748878 + AluSg SINE Alu 1 306 0 983 188 45 55 chr6 18666708 18666928 -163748314 + MER33 DNA MER1_type 19 237 -2348 2239 101 3 26 chr6 18666928 18667235 -163748007 - AluSx SINE Alu -12 300 1 983 188 45 55 chr6 18667235 18667323 -163747919 + MER33 DNA MER1_type 237 324 0 2355 82 3 0 chr6 18667826 18668108 -163747134 + AluSg SINE Alu 1 283 -27 850 149 44 135 chr6 18668126 18668291 -163746951 + L1 LINE L1 3819 3997 -2149 2269 70 0 21 chr6 18668291 18668577 -163746665 + AluY SINE Alu 1 280 -31 207 0 0 0 chr6 18668582 18668605 -163746637 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 850 149 44 135 chr6 18668605 18668629 -163746613 + L1 LINE L1 4001 4026 -2120 1810 163 0 46 chr6 18668629 18668955 -163746287 + AluJb SINE Alu 2 312 0 850 149 44 135 chr6 18668955 18669054 -163746188 + L1 LINE L1 4026 4087 -2059 2463 39 0 0 chr6 18669093 18669426 -163745816 - AluY SINE Alu 0 335 3 484 139 106 4 chr6 18669437 18669558 -163745684 - L1M4 LINE L1 -675 5480 5365 264 30 0 0 chr6 18669570 18669603 -163745639 + (CA)n Simple_repeat Simple_repeat 2 34 0 1977 162 0 0 chr6 18670036 18670333 -163744909 + AluSx SINE Alu 3 299 -13 725 247 0 0 chr6 18670387 18670549 -163744693 + L1ME1 LINE L1 5428 5589 -577 1125 159 0 11 chr6 18670550 18670726 -163744516 + AluSg/x SINE Alu 127 300 -10 1667 251 62 33 chr6 18670730 18671281 -163743961 + L1ME1 LINE L1 5596 6162 -4 2426 57 0 0 chr6 18671303 18671584 -163743658 + AluY SINE Alu 16 296 -15 1878 181 0 0 chr6 18671698 18672001 -163743241 - AluJb SINE Alu -7 305 3 296 269 27 81 chr6 18672136 18672322 -163742920 - MER3 DNA MER1_type 0 209 34 1796 184 7 0 chr6 18672368 18672672 -163742570 - AluJb SINE Alu -6 306 1 2484 87 0 0 chr6 18672821 18673130 -163742112 + AluSx SINE Alu 1 309 -3 2097 122 0 14 chr6 18674142 18674462 -163740780 - AluSq SINE Alu 0 316 1 1535 195 3 20 chr6 18674469 18674895 -163740347 - AluJo SINE Alu 0 421 1 2317 89 7 0 chr6 18675061 18675353 -163739889 - AluSc SINE Alu -15 294 1 1690 188 30 0 chr6 18676193 18676491 -163738751 + AluJo SINE Alu 1 307 -5 191 35 0 35 chr6 18676491 18676520 -163738722 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1999 165 0 0 chr6 18676520 18676823 -163738419 + AluJb SINE Alu 1 303 -9 566 176 0 8 chr6 18676848 18676973 -163738269 + GA-rich Low_complexity Low_complexity 4 127 0 604 156 0 0 chr6 18677018 18677108 -163738134 - Tigger5 DNA MER2_type 0 2323 2234 1791 174 34 0 chr6 18677154 18677482 -163737760 - L1MA7 LINE L1 -27 6264 5926 2591 65 0 0 chr6 18677911 18678221 -163737021 - AluY SINE Alu -1 310 1 188 159 0 23 chr6 18678763 18678807 -163736435 - L2 LINE L2 -4 3309 3267 2190 99 7 20 chr6 18679026 18679328 -163735914 - AluSx SINE Alu -14 298 1 2269 84 0 0 chr6 18679848 18680122 -163735120 + AluY SINE Alu 1 274 -37 180 0 0 0 chr6 18680126 18680146 -163735096 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2865 7 0 0 chr6 18680596 18680897 -163734345 + AluYa5 SINE Alu 2 302 -9 3421 188 20 40 chr6 18681292 18681491 -163733751 + MER44D DNA MER2_type 18 219 -2368 1348 157 36 5 chr6 18681491 18681714 -163733528 - MER30 DNA MER1_type 0 230 1 3421 188 20 40 chr6 18681714 18681797 -163733445 + MER44D DNA MER2_type 219 302 -2285 2435 120 72 8 chr6 18681797 18682197 -163733045 + MSTA LTR MaLR 1 426 -2 3421 188 20 40 chr6 18682197 18682615 -163732627 + MER44D DNA MER2_type 302 705 0 191 314 107 50 chr6 18683215 18683336 -163731906 - L2 LINE L2 -10 3303 3176 202 330 0 23 chr6 18685258 18685346 -163729896 + C-rich Low_complexity Low_complexity 4 89 0 216 258 11 70 chr6 18685566 18685752 -163729490 + G-rich Low_complexity Low_complexity 3 177 0 29 60 0 0 chr6 18685856 18685906 -163729336 + GC_rich Low_complexity Low_complexity 1 50 0 1051 235 80 37 chr6 18686987 18687311 -163727931 - MER58B DNA MER1_type -1 340 3 5157 162 11 13 chr6 18687644 18688632 -163726610 + L1MB8 LINE L1 5195 6178 0 2159 117 0 0 chr6 18688856 18689147 -163726095 - AluSx SINE Alu -21 291 1 2603 52 0 3 chr6 18689200 18689508 -163725734 + AluY SINE Alu 1 307 -4 468 256 36 23 chr6 18689515 18689697 -163725545 - L1P4 LINE L1 -341 5824 5641 1207 162 68 26 chr6 18690285 18690316 -163724926 - L1MB3 LINE L1 -15 6168 6140 2490 71 0 0 chr6 18690316 18690611 -163724631 - AluY SINE Alu -16 295 1 1207 162 68 26 chr6 18690611 18690844 -163724398 - L1MB3 LINE L1 -43 6140 5893 2102 118 10 0 chr6 18690854 18691150 -163724092 - AluSx SINE Alu -13 299 1 2123 100 3 21 chr6 18691727 18692016 -163723226 + AluY SINE Alu 1 284 -27 186 43 0 0 chr6 18692016 18692039 -163723203 + (CA)n Simple_repeat Simple_repeat 2 24 0 2504 70 0 7 chr6 18692369 18692671 -163722571 + AluY SINE Alu 1 300 -11 2021 131 64 12 chr6 18692872 18693215 -163722027 + MLT1A1 LTR MaLR 1 361 -4 569 284 38 54 chr6 18693818 18694079 -163721163 + Charlie2 DNA MER1_type 1 257 -2605 350 248 17 26 chr6 18694188 18694303 -163720939 + Charlie2 DNA MER1_type 1857 1970 -892 1048 199 143 56 chr6 18694303 18694695 -163720547 - LTR37A LTR ERV1 0 426 1 1470 217 92 41 chr6 18694740 18694878 -163720364 + Charlie2 DNA MER1_type 2034 2164 -698 2296 106 0 3 chr6 18694878 18695190 -163720052 - AluSx SINE Alu -1 311 1 1470 217 92 41 chr6 18695190 18695805 -163719437 + Charlie2 DNA MER1_type 2164 2862 0 2335 95 0 16 chr6 18695977 18696111 -163719131 + AluSg SINE Alu 1 136 -174 2503 64 0 0 chr6 18696111 18696408 -163718834 + AluY SINE Alu 1 297 -14 2335 95 0 16 chr6 18696408 18696577 -163718665 + AluSg SINE Alu 136 299 -11 1789 139 41 44 chr6 18696753 18696888 -163718354 - MER44D DNA MER2_type -1882 609 475 2090 105 7 14 chr6 18696888 18697182 -163718060 + AluSx SINE Alu 1 292 -20 1789 139 41 44 chr6 18697182 18697286 -163717956 - MER44D DNA MER2_type -2016 475 372 288 0 0 0 chr6 18697286 18697318 -163717924 + (TC)n Simple_repeat Simple_repeat 1 32 0 1789 139 41 44 chr6 18697318 18697416 -163717826 - MER44D DNA MER2_type -2119 372 2 185 0 0 39 chr6 18697489 18697515 -163717727 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1984 153 0 0 chr6 18697534 18697828 -163717414 - AluJo SINE Alu -18 294 1 298 295 179 12 chr6 18697864 18698037 -163717205 - L1ME LINE L1 -5625 445 244 2238 108 7 0 chr6 18698182 18698479 -163716763 - AluSg SINE Alu -11 299 1 1085 154 0 12 chr6 18699112 18699281 -163715961 + FRAM SINE Alu 1 161 -15 2287 107 0 7 chr6 18699282 18699590 -163715652 + AluSx SINE Alu 1 306 -6 1744 138 70 121 chr6 18699883 18700338 -163714904 - MSTB1 LTR MaLR 0 432 1 2330 78 3 29 chr6 18700448 18700756 -163714486 - AluY SINE Alu -11 300 1 2240 110 0 0 chr6 18700877 18701168 -163714074 + AluSx SINE Alu 1 291 -21 348 233 113 63 chr6 18702035 18702194 -163713048 + MER5A DNA MER1_type 1 167 -22 2134 80 45 11 chr6 18702360 18702646 -163712596 - AluY SINE Alu -15 296 1 3532 186 25 11 chr6 18702767 18703476 -163711766 - L1MB7 LINE L1 -212 5972 5254 2333 104 0 0 chr6 18705559 18705856 -163709386 + AluSx SINE Alu 1 297 -15 6105 72 2 19 chr6 18706051 18706858 -163708384 - L1PA8A LINE L1 0 6131 5338 733 254 135 55 chr6 18708209 18708594 -163706648 + HAL1 LINE L1 2092 2507 0 1464 204 10 23 chr6 18708600 18708899 -163706343 + AluJo SINE Alu 3 297 -15 2009 143 3 0 chr6 18709062 18709362 -163705880 - AluJb SINE Alu -11 301 1 1293 116 0 0 chr6 18711476 18711648 -163703594 - AluSg/x SINE Alu -17 293 122 2412 94 3 0 chr6 18711648 18711957 -163703285 - AluSg SINE Alu 0 310 1 23 0 0 0 chr6 18712154 18712177 -163703065 + AT_rich Low_complexity Low_complexity 1 23 0 3541 86 8 15 chr6 18712707 18713185 -163702057 + L1PB2 LINE L1 5676 6150 -1 934 172 0 0 chr6 18713683 18713834 -163701408 - FRAM SINE Alu -25 151 1 2338 106 0 0 chr6 18714134 18714436 -163700806 - AluY SINE Alu -9 302 1 21 57 0 0 chr6 18714602 18714637 -163700605 + AT_rich Low_complexity Low_complexity 1 35 0 760 161 21 94 chr6 18714637 18714829 -163700413 + MER53 DNA DNA 12 189 0 25 0 0 0 chr6 18715536 18715561 -163699681 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 18715860 18715883 -163699359 + AT_rich Low_complexity Low_complexity 1 23 0 2414 48 3 7 chr6 18715911 18716203 -163699039 + AluY SINE Alu 5 295 -16 254 287 134 38 chr6 18717352 18717509 -163697733 + MIR SINE MIR 20 191 -71 1833 157 7 0 chr6 18717602 18717917 -163697325 + AluSx SINE Alu 3 319 0 2281 101 3 10 chr6 18718014 18718322 -163696920 - AluSx SINE Alu -6 306 1 757 287 148 22 chr6 18718625 18719192 -163696050 - L2 LINE L2 0 3313 2683 4351 146 42 3 chr6 18719244 18719941 -163695301 + L1MB2 LINE L1 5441 6164 -7 203 279 16 16 chr6 18719975 18720036 -163695206 - L3 LINE CR1 -1 1576 1516 2352 4 0 0 chr6 18720327 18720573 -163694669 + L1PA2 LINE L1 5908 6153 -2 221 182 0 30 chr6 18721477 18721543 -163693699 + GA-rich Low_complexity Low_complexity 1 64 0 2391 84 0 0 chr6 18722328 18722624 -163692618 - AluSg SINE Alu -14 296 1 1706 138 8 0 chr6 18722851 18723105 -163692137 + L1PA15 LINE L1 5905 6160 -5 34 0 0 0 chr6 18723112 18723146 -163692096 + AT_rich Low_complexity Low_complexity 1 34 0 282 235 5 53 chr6 18724538 18724725 -163690517 + CT-rich Low_complexity Low_complexity 2 179 0 * 340 116 14 29 chr6 18724707 18724776 -163690466 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 255 270 70 78 chr6 18724803 18724918 -163690324 - MIR SINE MIR -67 141 28 2371 109 0 0 chr6 18726004 18726316 -163688926 - AluSx SINE Alu 0 312 1 488 213 109 11 chr6 18726415 18726589 -163688653 - L1MC4a LINE L1 -1758 6050 5860 * 8216 3 0 0 chr6 18726583 18727482 -163687760 + L1HS LINE L1 5257 6155 0 183 42 0 0 chr6 18727505 18727529 -163687713 + (A)n Simple_repeat Simple_repeat 1 24 0 794 231 129 0 chr6 18727529 18727754 -163687488 - L1MC4a LINE L1 -1937 5871 5618 546 91 0 0 chr6 18727855 18727932 -163687310 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1924 128 7 35 chr6 18727932 18728220 -163687022 - AluSx SINE Alu -32 280 1 491 247 58 54 chr6 18728225 18728607 -163686635 - LTR33 LTR ERVL -42 479 34 * 3572 102 12 8 chr6 18728569 18729051 -163686191 + MER1A DNA MER1_type 46 529 0 298 162 44 15 chr6 18729054 18729122 -163686120 - LTR33 LTR ERVL -436 85 16 1043 243 48 40 chr6 18729126 18729384 -163685858 - L1MC4a LINE L1 -2174 5634 5371 2159 112 0 14 chr6 18729384 18729678 -163685564 + AluSg SINE Alu 1 290 -20 1043 243 48 40 chr6 18729678 18729797 -163685445 - L1MC4a LINE L1 -2437 5371 5254 2267 106 0 0 chr6 18729873 18730174 -163685068 + AluSg SINE Alu 1 301 -9 2453 82 0 3 chr6 18730221 18730526 -163684716 - AluY SINE Alu -7 304 1 2328 108 0 0 chr6 18730619 18730924 -163684318 + AluSg SINE Alu 2 306 -4 707 297 112 47 chr6 18730945 18731243 -163683999 - L1MC4a LINE L1 -1098 5048 4771 2930 126 139 30 chr6 18731243 18731718 -163683524 - MER1A DNA MER1_type 0 527 1 707 297 112 47 chr6 18731718 18732394 -163682848 - L1MC4a LINE L1 -1375 4771 4140 311 0 26 0 chr6 18732394 18732433 -163682809 + (TG)n Simple_repeat Simple_repeat 1 40 0 707 297 112 47 chr6 18732433 18732464 -163682778 - L1MC4a LINE L1 -2006 4140 4112 2998 69 0 0 chr6 18732464 18732824 -163682418 - L1PA6 LINE L1 -6 6148 5789 707 297 112 47 chr6 18732824 18732980 -163682262 - L1MC4a LINE L1 -2034 4112 3810 26 0 0 0 chr6 18733151 18733177 -163682065 + AT_rich Low_complexity Low_complexity 1 26 0 1995 139 0 7 chr6 18733278 18733572 -163681670 - AluJb SINE Alu -20 292 1 22 0 0 0 chr6 18733711 18733733 -163681509 + AT_rich Low_complexity Low_complexity 1 22 0 200 386 23 0 chr6 18734010 18734098 -163681144 + MIR SINE MIR 32 121 -87 759 188 0 0 chr6 18734394 18734511 -163680731 + AluJo/FLAM SINE Alu 2 118 -194 2045 133 3 0 chr6 18734511 18734804 -163680438 - AluSx SINE Alu -18 294 1 980 186 6 0 chr6 18734889 18735056 -163680186 + FRAM SINE Alu 1 164 -12 219 36 0 0 chr6 18735354 18735382 -163679860 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr6 18735780 18735802 -163679440 + AT_rich Low_complexity Low_complexity 1 22 0 2359 86 0 13 chr6 18736144 18736446 -163678796 + AluSc SINE Alu 1 298 -11 360 0 0 0 chr6 18736592 18736632 -163678610 + (CA)n Simple_repeat Simple_repeat 1 40 0 2136 122 0 0 chr6 18736908 18737194 -163678048 - AluSx SINE Alu -26 286 1 849 204 98 36 chr6 18737671 18737945 -163677297 + MER5C DNA MER1_type 33 323 -1 300 260 96 34 chr6 18738358 18738504 -163676738 + L1ME4a LINE L1 5963 6117 -4 1285 154 90 79 chr6 18738828 18739107 -163676135 - AluJo SINE Alu -30 282 1 288 373 82 0 chr6 18739208 18739293 -163675949 - MIR SINE MIR -6 256 179 2138 113 3 0 chr6 18739293 18739585 -163675657 - AluSx SINE Alu -19 293 1 288 373 82 0 chr6 18739585 18739732 -163675510 - MIR SINE MIR -83 179 5 302 275 6 75 chr6 18740465 18740556 -163674686 - L1ME4a LINE L1 -212 5909 5832 2230 96 10 0 chr6 18740556 18740849 -163674393 - AluSq SINE Alu -17 296 1 302 275 6 75 chr6 18740849 18740917 -163674325 - L1ME4a LINE L1 -289 5832 5761 233 315 14 0 chr6 18740999 18741072 -163674170 + MER96 DNA MER1_type? 102 175 0 352 282 63 53 chr6 18741120 18741187 -163674055 - L1ME4a LINE L1 -2063 5745 5680 2209 117 0 7 chr6 18741187 18741496 -163673746 - AluSq SINE Alu -6 307 1 352 282 63 53 chr6 18741496 18741634 -163673608 - L1ME4a LINE L1 -2128 5680 5538 2372 71 3 0 chr6 18741843 18742137 -163673105 - AluY SINE Alu -16 295 1 22 0 0 0 chr6 18742434 18742456 -163672786 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 18743019 18743043 -163672199 + AT_rich Low_complexity Low_complexity 1 24 0 197 233 96 68 chr6 18743227 18743300 -163671942 + L2 LINE L2 3179 3253 -19 2317 88 0 0 chr6 18743302 18743597 -163671645 - AluSx SINE Alu -17 295 1 273 254 112 37 chr6 18743664 18743798 -163671444 - L1ME4a LINE L1 -1 6120 5977 185 327 83 71 chr6 18745358 18745526 -163669716 - L2 LINE L2 -30 3242 3073 1702 127 46 81 chr6 18745674 18745997 -163669245 - AluJb SINE Alu 0 312 1 210 302 62 0 chr6 18746031 18746127 -163669115 - L2 LINE L2 -422 2892 2791 187 356 159 38 chr6 18746616 18746748 -163668494 + MIR3 SINE MIR 19 166 -42 3815 148 42 23 chr6 18746774 18747327 -163667915 + MER50 LTR ERV1 1 571 -163 2439 75 0 0 chr6 18747327 18747622 -163667620 - AluY SINE Alu -16 295 1 3815 148 42 23 chr6 18747622 18747766 -163667476 + MER50 LTR ERV1 571 711 -23 922 192 68 0 chr6 18747865 18748042 -163667200 + MER5A DNA MER1_type 1 189 0 206 219 0 0 chr6 18750666 18750707 -163664535 + GA-rich Low_complexity Low_complexity 2 42 0 2312 238 125 29 chr6 18751589 18752516 -163662726 + HAL1b LINE L1 43 1058 -290 1990 155 0 3 chr6 18752654 18752963 -163662279 + AluJo SINE Alu 2 309 -3 2011 143 0 23 chr6 18753006 18753314 -163661928 - AluSx SINE Alu -11 301 1 25 0 0 0 chr6 18753470 18753495 -163661747 + AT_rich Low_complexity Low_complexity 1 25 0 2590 61 0 3 chr6 18753498 18753810 -163661432 + AluY SINE Alu 1 311 0 3256 161 29 11 chr6 18754174 18754733 -163660509 - L1MB8 LINE L1 0 6178 5610 377 273 40 0 chr6 18755409 18755508 -163659734 - MER5A DNA MER1_type -61 128 26 24 0 0 0 chr6 18756066 18756090 -163659152 + AT_rich Low_complexity Low_complexity 1 24 0 689 290 0 0 chr6 18756273 18756435 -163658807 - MER5B DNA MER1_type -6 172 11 862 207 18 35 chr6 18756972 18757141 -163658101 - FRAM SINE Alu 0 166 1 2809 156 4 24 chr6 18757389 18757856 -163657386 - LTR32 LTR ERVL 0 471 14 954 186 11 0 chr6 18758063 18758240 -163657002 - MER5A DNA MER1_type 0 189 11 612 223 153 0 chr6 18758333 18758490 -163656752 - MER5A DNA MER1_type 0 189 9 432 274 0 35 chr6 18758591 18758704 -163656538 - MLT1I LTR MaLR -9 400 292 977 119 7 7 chr6 18758958 18759101 -163656141 + MLT1E3 LTR MaLR 480 622 -2 3180 99 11 38 chr6 18759146 18759314 -163655928 - L1MA2 LINE L1 0 6304 6133 2143 118 0 3 chr6 18759314 18759610 -163655632 - AluSg SINE Alu -15 295 1 3180 99 11 38 chr6 18759610 18759916 -163655326 - L1MA2 LINE L1 -171 6133 5843 408 228 162 15 chr6 18760176 18760312 -163654930 + MER112 DNA MER1_type 97 252 -8 180 0 0 0 chr6 18760818 18760838 -163654404 + (CACCT)n Simple_repeat Simple_repeat 1 20 0 414 53 0 0 chr6 18761178 18761235 -163654007 + (TG)n Simple_repeat Simple_repeat 2 58 0 226 356 0 14 chr6 18761827 18761900 -163653342 + MIR SINE MIR 14 85 -177 471 226 0 9 chr6 18762039 18762145 -163653097 + MIR SINE MIR 88 192 -70 714 271 200 8 chr6 18762187 18762552 -163652690 - MLT1J1 LTR MaLR -2 444 10 2516 54 3 0 chr6 18763338 18763633 -163651609 + AluY SINE Alu 1 296 -15 2875 3 0 0 chr6 18763840 18764141 -163651101 + AluYa5 SINE Alu 1 301 -10 21 36 0 0 chr6 18765718 18765746 -163649496 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr6 18765973 18765998 -163649244 + (T)n Simple_repeat Simple_repeat 1 25 0 2447 95 0 0 chr6 18766702 18767006 -163648236 + AluSg SINE Alu 1 304 -6 2385 77 6 13 chr6 18768649 18768961 -163646281 - AluSx SINE Alu -2 310 1 231 120 53 27 chr6 18769770 18769845 -163645397 + (TA)n Simple_repeat Simple_repeat 2 78 0 1777 174 0 36 chr6 18769929 18770233 -163645009 - AluSx SINE Alu -19 293 1 187 325 56 30 chr6 18771033 18771230 -163644012 + L2 LINE L2 2369 2570 -744 268 268 8 8 chr6 18771244 18771371 -163643871 + GA-rich Low_complexity Low_complexity 3 129 0 2560 54 0 19 chr6 18771388 18771702 -163643540 - AluY SINE Alu -3 308 1 2088 80 31 77 chr6 18772552 18772877 -163642365 - AluSq SINE Alu -2 311 2 2208 193 17 25 chr6 18773927 18774032 -163641210 - MLT1C LTR MaLR 0 467 363 2298 44 68 14 chr6 18774032 18774325 -163640917 + AluSc SINE Alu 1 309 0 2208 193 17 25 chr6 18774325 18774690 -163640552 - MLT1C LTR MaLR -104 363 1 770 177 0 0 chr6 18777851 18777975 -163637267 + FLAM_A SINE Alu 1 124 -9 1920 145 7 7 chr6 18778111 18778407 -163636835 + AluJb SINE Alu 1 296 -16 232 231 0 0 chr6 18778864 18778916 -163636326 - L2 LINE L2 0 3313 3262 2334 77 0 3 chr6 18779240 18779558 -163635684 - AluSq SINE Alu 0 317 1 185 0 40 0 chr6 18779560 18779585 -163635657 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1525 147 47 0 chr6 18779585 18779734 -163635508 - AluJo SINE Alu -31 281 116 207 0 0 0 chr6 18779734 18779757 -163635485 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1525 147 47 0 chr6 18779757 18779839 -163635403 - AluJo SINE Alu -196 116 39 833 197 0 14 chr6 18779848 18779995 -163635247 - AluJo SINE Alu -167 145 1 219 261 62 0 chr6 18780412 18780477 -163634765 + MIR SINE MIR 118 186 -76 180 293 52 17 chr6 18780688 18780746 -163634496 - MIR SINE MIR -124 84 25 2305 114 0 0 chr6 18780939 18781246 -163633996 + AluSg SINE Alu 1 307 -3 354 284 95 0 chr6 18781507 18781623 -163633619 - L2 LINE L2 0 3272 3146 1993 226 126 31 chr6 18781660 18782360 -163632882 + MER20B DNA MER1_type 6 771 -12 469 302 104 31 chr6 18783442 18783664 -163631578 + MIR SINE MIR 19 256 -6 389 246 80 0 chr6 18784581 18784719 -163630523 + L2 LINE L2 3149 3297 -16 1855 263 67 43 chr6 18785646 18786469 -163628773 + L2 LINE L2 2326 3185 -128 1772 194 88 50 chr6 18786469 18786970 -163628272 + MLT2B1 LTR ERVL 1 520 0 1855 263 67 43 chr6 18786970 18787102 -163628140 + L2 LINE L2 3185 3312 -1 332 278 99 13 chr6 18788052 18788203 -163627039 + MER103 DNA DNA 1 164 -2 791 182 0 0 chr6 18788280 18788412 -163626830 - FLAM_C SINE Alu 0 133 2 2338 67 0 3 chr6 18790490 18790816 -163624426 - AluY SINE Alu 0 325 1 2377 95 0 0 chr6 18790912 18791208 -163624034 + AluSx SINE Alu 9 304 -8 1746 134 7 11 chr6 18791360 18791636 -163623606 + AluJo SINE Alu 6 280 -32 297 0 0 0 chr6 18791636 18791669 -163623573 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 405 109 0 0 chr6 18792108 18792172 -163623070 + (TA)n Simple_repeat Simple_repeat 2 65 0 913 56 0 0 chr6 18792175 18792283 -163622959 - AluSc SINE Alu -30 279 172 319 28 0 0 chr6 18793061 18793097 -163622145 - U2 snRNA snRNA -152 36 1 251 271 42 28 chr6 18793115 18793259 -163621983 + L1ME4a LINE L1 5976 6121 0 1550 107 154 136 chr6 18794928 18795114 -163620128 - MLT1B LTR MaLR 0 390 209 2085 110 37 20 chr6 18795114 18795413 -163619829 + AluSq SINE Alu 1 304 -9 1550 107 154 136 chr6 18795413 18795609 -163619633 - MLT1B LTR MaLR -181 209 1 576 339 16 8 chr6 18795976 18796218 -163619024 - MIR SINE MIR -6 256 13 347 225 63 27 chr6 18796324 18796435 -163618807 + MIR3 SINE MIR 43 157 -51 459 239 96 16 chr6 18796445 18796502 -163618740 + MER112 DNA MER1_type 8 59 -201 201 39 0 0 chr6 18796502 18796528 -163618714 + (CA)n Simple_repeat Simple_repeat 2 27 0 459 239 96 16 chr6 18796528 18796658 -163618584 + MER112 DNA MER1_type 59 210 -50 391 274 211 5 chr6 18796849 18797053 -163618189 - MIR SINE MIR 0 262 17 682 185 19 45 chr6 18797204 18797361 -163617881 + MER5B DNA MER1_type 26 178 0 1387 192 17 31 chr6 18797694 18797986 -163617256 - AluJo SINE Alu -24 288 1 1960 115 54 0 chr6 18798158 18798437 -163616805 + AluSx SINE Alu 1 294 -18 2325 86 3 26 chr6 18800540 18800842 -163614400 - AluSc SINE Alu -14 295 1 23 0 0 0 chr6 18801033 18801056 -163614186 + AT_rich Low_complexity Low_complexity 1 23 0 2291 97 10 0 chr6 18801183 18801472 -163613770 + AluSx SINE Alu 1 292 -20 2241 127 15 46 chr6 18801476 18801869 -163613373 + L1MB8 LINE L1 5614 5994 -190 792 134 6 56 chr6 18801948 18802127 -163613115 + L1MB8 LINE L1 6003 6172 -6 2188 138 0 6 chr6 18803230 18803541 -163611701 - AluSx SINE Alu -3 309 1 2001 137 0 19 chr6 18803898 18804205 -163611037 + AluJo SINE Alu 4 304 -8 203 254 16 32 chr6 18804246 18804309 -163610933 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 204 237 51 0 chr6 18804329 18804388 -163610854 - MIR SINE MIR 0 262 201 23 0 0 0 chr6 18805572 18805595 -163609647 + AT_rich Low_complexity Low_complexity 1 23 0 2136 118 7 0 chr6 18805869 18806156 -163609086 + AluSx SINE Alu 1 289 -23 2244 110 3 7 chr6 18806253 18806562 -163608680 + AluSx SINE Alu 1 308 -4 2112 115 28 0 chr6 18806710 18806998 -163608244 + AluSx SINE Alu 1 296 -16 2342 134 3 21 chr6 18807045 18807425 -163607817 + L1PA16 LINE L1 5793 6165 -1 354 173 40 13 chr6 18808059 18808134 -163607108 + L2 LINE L2 3194 3270 -2 1270 122 0 0 chr6 18808217 18808405 -163606837 + L1PB1 LINE L1 5962 6149 -2 584 197 61 14 chr6 18809250 18809397 -163605845 + MER112 DNA MER1_type 96 249 -11 2232 106 0 0 chr6 18809406 18809715 -163605527 + AluSq SINE Alu 1 309 0 35 71 0 0 chr6 18810019 18810089 -163605153 + AT_rich Low_complexity Low_complexity 1 70 0 2055 143 0 13 chr6 18810411 18810725 -163604517 - AluJb SINE Alu -2 310 1 1974 144 0 7 chr6 18811889 18812180 -163603062 - AluJb SINE Alu -6 306 18 2326 77 3 17 chr6 18812920 18813220 -163602022 + AluY SINE Alu 1 296 -15 226 351 8 61 chr6 18813314 18813445 -163601797 - L2 LINE L2 -8 3264 3141 292 220 184 137 chr6 18813557 18813618 -163601624 + MER5A DNA MER1_type 14 71 -118 2241 117 0 0 chr6 18813618 18813925 -163601317 + AluSx SINE Alu 5 311 -1 292 220 184 137 chr6 18813925 18814031 -163601211 + MER5A DNA MER1_type 71 189 0 241 318 157 27 chr6 18814282 18814505 -163600737 - L2 LINE L2 -210 3062 2811 1180 139 0 0 chr6 18814577 18814750 -163600492 - AluSc SINE Alu -6 303 131 570 100 0 0 chr6 18814750 18814820 -163600422 - AluS SINE Alu -242 71 2 202 299 201 50 chr6 18815091 18815573 -163599669 - L2 LINE L2 -908 2406 1852 2224 82 0 7 chr6 18815604 18815884 -163599358 + AluSc SINE Alu 24 301 -8 2427 187 59 17 chr6 18816176 18816635 -163598607 - MER66A LTR ERV1 0 478 1 2253 102 0 28 chr6 18816668 18816990 -163598252 - AluSq SINE Alu 0 313 1 683 126 0 59 chr6 18817163 18817282 -163597960 + AluSg/x SINE Alu 197 308 -4 219 254 0 34 chr6 18817418 18817477 -163597765 - L2 LINE L2 0 3313 3257 209 294 96 44 chr6 18817527 18817663 -163597579 - L2 LINE L2 -235 3037 2895 2197 108 0 3 chr6 18817908 18818205 -163597037 - AluSx SINE Alu -16 296 1 2462 82 3 0 chr6 18818463 18818769 -163596473 + AluSx SINE Alu 1 307 -5 2163 113 6 25 chr6 18819372 18819690 -163595552 - AluSx SINE Alu 0 312 1 1819 126 7 7 chr6 18819827 18820104 -163595138 + Tigger5 DNA MER2_type 2047 2323 0 34 24 0 0 chr6 18820581 18820622 -163594620 + AT_rich Low_complexity Low_complexity 1 41 0 1031 84 30 0 chr6 18820721 18820852 -163594390 + AluJb SINE Alu 1 135 -177 2499 59 0 0 chr6 18821149 18821439 -163593803 + AluY SINE Alu 3 292 -19 204 40 0 0 chr6 18821439 18821464 -163593778 + (TA)n Simple_repeat Simple_repeat 1 25 0 665 68 91 0 chr6 18821693 18821781 -163593461 + FLAM_C SINE Alu 35 130 -13 1507 147 23 30 chr6 18821879 18822144 -163593098 - AluJo SINE Alu -25 287 25 245 343 139 15 chr6 18823682 18823819 -163591423 + L2 LINE L2 3117 3270 -2 1075 102 0 0 chr6 18823922 18824069 -163591173 - AluSg/x SINE Alu -6 304 158 1948 107 28 10 chr6 18824169 18824458 -163590784 + AluSx SINE Alu 19 312 0 2405 78 0 31 chr6 18824469 18824789 -163590453 + AluSp SINE Alu 1 310 -3 2316 103 3 0 chr6 18825251 18825553 -163589689 - AluSc SINE Alu -6 303 1 2425 80 3 0 chr6 18826962 18827261 -163587981 - AluSq SINE Alu -13 300 1 314 247 0 14 chr6 18827498 18827571 -163587671 - MER5B DNA MER1_type -6 172 101 1280 113 0 21 chr6 18827624 18827810 -163587432 - AluSx SINE Alu -130 182 1 1702 142 3 42 chr6 18828863 18829180 -163586062 - AluJb SINE Alu 0 309 4 189 0 0 0 chr6 18829188 18829209 -163586033 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2054 139 0 10 chr6 18829471 18829774 -163585468 + AluSx SINE Alu 1 300 -12 1542 155 7 37 chr6 18829888 18830159 -163585083 + AluJo SINE Alu 34 296 -16 1912 152 0 7 chr6 18831485 18831782 -163583460 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr6 18832130 18832154 -163583088 + AT_rich Low_complexity Low_complexity 1 24 0 2246 81 0 11 chr6 18832161 18832465 -163582777 + AluSx SINE Alu 6 306 0 1797 92 21 50 chr6 18832935 18833018 -163582224 - L1MA4A LINE L1 -4 6299 6215 2129 88 0 0 chr6 18833018 18833279 -163581963 + AluSx SINE Alu 34 294 -18 1797 92 21 50 chr6 18833279 18833476 -163581766 - L1MA4A LINE L1 -88 6215 6027 1251 167 16 32 chr6 18833599 18833851 -163581391 - L1MB3 LINE L1 0 6183 5936 416 275 121 85 chr6 18834974 18835023 -163580219 + L2 LINE L2 2928 2974 -298 2439 67 0 25 chr6 18835023 18835337 -163579905 + AluY SINE Alu 1 306 -5 416 275 121 85 chr6 18835337 18835530 -163579712 + L2 LINE L2 2974 3188 -84 2383 107 0 0 chr6 18835530 18835838 -163579404 + AluSx SINE Alu 1 308 -4 416 275 121 85 chr6 18835838 18835925 -163579317 + L2 LINE L2 3188 3270 -2 22 0 0 0 chr6 18836134 18836156 -163579086 + AT_rich Low_complexity Low_complexity 1 22 0 1970 113 0 48 chr6 18836232 18836542 -163578700 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 18836766 18836787 -163578455 + AT_rich Low_complexity Low_complexity 1 21 0 186 339 0 0 chr6 18836848 18836907 -163578335 - MIR3 SINE MIR -1 207 149 7896 35 0 3 chr6 18837238 18838329 -163576913 - L1PA5 LINE L1 -3 6151 5057 4570 31 0 0 chr6 18838329 18838852 -163576390 + L1P LINE L1 3951 4473 -1673 544 288 126 44 chr6 18839175 18839247 -163575995 + L1ME LINE L1 4067 4132 -2014 2432 84 0 0 chr6 18839247 18839544 -163575698 + AluY SINE Alu 1 297 -14 544 288 126 44 chr6 18839544 18839773 -163575469 + L1ME LINE L1 4132 4341 -1805 2169 114 7 3 chr6 18839773 18840081 -163575161 + AluY SINE Alu 1 309 -2 544 288 126 44 chr6 18840081 18840500 -163574742 + L1ME LINE L1 4341 4847 -1299 810 254 71 56 chr6 18840512 18840870 -163574372 + L1P4 LINE L1 4918 5269 -897 2179 96 4 4 chr6 18840870 18841151 -163574091 + AluSp SINE Alu 2 282 -31 186 43 0 0 chr6 18841155 18841178 -163574064 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 810 254 71 56 chr6 18841178 18841335 -163573907 + L1P4 LINE L1 5271 5455 -711 578 323 53 8 chr6 18841453 18841719 -163573523 + L1ME LINE L1 5499 5776 -386 821 181 0 75 chr6 18841774 18841958 -163573284 + FRAM SINE Alu 1 171 0 243 0 0 0 chr6 18842082 18842109 -163573133 + (T)n Simple_repeat Simple_repeat 1 27 0 256 376 73 0 chr6 18843709 18843818 -163571424 - MER5A DNA MER1_type -15 174 58 1892 107 65 0 chr6 18844054 18844317 -163570925 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr6 18844317 18844338 -163570904 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 519 224 0 0 chr6 18844874 18844981 -163570261 + MER5B DNA MER1_type 72 178 0 2242 97 0 3 chr6 18845038 18845336 -163569906 + AluY SINE Alu 1 297 -14 1340 109 0 0 chr6 18845785 18845988 -163569254 - AluJ SINE Alu 0 309 107 787 190 7 0 chr6 18845988 18846125 -163569117 + L1M3f LINE L1 396 533 -4795 756 160 8 0 chr6 18846125 18846244 -163568998 - AluJ SINE Alu -191 121 2 546 129 24 0 chr6 18846770 18846855 -163568387 + MER5A DNA MER1_type 26 112 -77 240 232 21 169 chr6 18846779 18846887 -163568355 - MER5A DNA MER1_type -23 166 82 * 2358 82 3 0 chr6 18846887 18847181 -163568061 - AluSp SINE Alu -18 295 1 240 232 21 169 chr6 18847181 18847214 -163568028 - MER5A DNA MER1_type -107 82 46 207 0 50 50 chr6 18847224 18847264 -163567978 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 2082 101 0 14 chr6 18847267 18847554 -163567688 - AluSq SINE Alu -30 283 1 194 260 20 0 chr6 18847556 18847606 -163567636 + MER5A DNA MER1_type 128 178 -11 383 333 56 6 chr6 18847636 18847816 -163567426 + MIR SINE MIR 51 239 -23 2252 140 3 20 chr6 18850055 18850398 -163564844 + MER1B DNA MER1_type 1 337 0 2274 100 0 17 chr6 18850642 18850943 -163564299 + AluSx SINE Alu 1 296 -16 2342 94 0 0 chr6 18850945 18851244 -163563998 + AluY SINE Alu 3 301 -10 240 217 17 50 chr6 18851534 18851594 -163563648 - MIR3 SINE MIR -35 173 116 269 295 119 31 chr6 18851834 18852061 -163563181 + L2 LINE L2 2205 2451 -863 2324 107 0 0 chr6 18852092 18852390 -163562852 + AluSg SINE Alu 1 298 -12 2421 89 0 10 chr6 18852391 18852704 -163562538 + AluSq SINE Alu 1 310 -3 314 297 40 0 chr6 18852711 18852812 -163562430 - L2 LINE L2 -926 2388 2284 1731 112 202 67 chr6 18852812 18853168 -163562074 - MER4A LTR ERV1 0 664 261 562 122 20 20 chr6 18853168 18853266 -163561976 - MER4A LTR ERV1 -566 98 1 17381 96 43 24 chr6 18853277 18855159 -163560083 - MER4A-int LTR ERV1 -5 6593 4642 2296 105 0 0 chr6 18855159 18855453 -163559789 + AluY SINE Alu 1 294 -17 17381 96 43 24 chr6 18855453 18856275 -163558967 - MER4A-int LTR ERV1 -1956 4642 3837 9380 108 145 139 chr6 18856274 18856532 -163558710 - MER4A-int LTR ERV1 -2917 3681 3426 * 2306 86 17 0 chr6 18856532 18856823 -163558419 + AluY SINE Alu 1 296 -15 9380 108 145 139 chr6 18856823 18856994 -163558248 - MER4A-int LTR ERV1 -3172 3426 3258 2025 131 16 22 chr6 18856994 18857307 -163557935 - AluSx SINE Alu -1 311 1 9380 108 145 139 chr6 18857307 18857654 -163557588 - MER4A-int LTR ERV1 -3340 3258 2915 2095 132 0 0 chr6 18857654 18857943 -163557299 + AluSc SINE Alu 1 289 -20 9380 108 145 139 chr6 18857943 18859429 -163555813 - MER4A-int LTR ERV1 -3683 2915 1439 1975 117 40 7 chr6 18859429 18859728 -163555514 + AluSc SINE Alu 1 309 0 9380 108 145 139 chr6 18859728 18860014 -163555228 - MER4A-int LTR ERV1 -5159 1439 1111 327 85 0 0 chr6 18860014 18860061 -163555181 + (CA)n Simple_repeat Simple_repeat 2 48 0 9380 108 145 139 chr6 18860061 18860181 -163555061 - MER4A-int LTR ERV1 -5487 1111 993 336 51 0 0 chr6 18860179 18860218 -163555024 - MER4A-int LTR ERV1 -5712 886 848 * 2834 87 117 26 chr6 18860346 18860788 -163554454 - MER4A-int LTR ERV1 -5790 808 407 2106 111 11 0 chr6 18860788 18861090 -163554152 + AluSx SINE Alu 1 305 0 2834 87 117 26 chr6 18861090 18861283 -163553959 - MER4A-int LTR ERV1 -6191 407 1 1825 118 159 78 chr6 18861285 18861571 -163553671 - MER4A LTR ERV1 0 664 340 2229 91 10 7 chr6 18861571 18861867 -163553375 - AluSx SINE Alu -7 305 9 1825 118 159 78 chr6 18861867 18861952 -163553290 - MER4A LTR ERV1 -324 340 263 613 82 31 21 chr6 18861952 18862049 -163553193 - MER4A LTR ERV1 -566 98 1 2279 98 0 0 chr6 18862484 18862770 -163552472 - AluSg SINE Alu -24 286 1 21 36 0 0 chr6 18862777 18862805 -163552437 + AT_rich Low_complexity Low_complexity 1 28 0 2777 144 58 52 chr6 18862920 18863113 -163552129 + MER4B LTR ERV1 1 191 -419 2235 112 7 0 chr6 18863113 18863418 -163551824 + AluSc SINE Alu 1 307 -2 2777 144 58 52 chr6 18863418 18863795 -163551447 + MER4B LTR ERV1 191 574 -36 356 295 111 16 chr6 18863823 18864013 -163551229 - Charlie7 DNA MER1_type -402 2210 2003 2676 200 115 71 chr6 18865201 18865992 -163549250 - LTR1B LTR ERV1 0 826 1 2392 100 0 0 chr6 18866013 18866323 -163548919 + AluSg SINE Alu 1 310 0 226 274 32 16 chr6 18866339 18866401 -163548841 + MIR SINE MIR 39 101 -107 572 300 55 67 chr6 18866525 18866868 -163548374 + MLT1J2 LTR MaLR 70 408 -42 857 230 24 0 chr6 18866996 18867161 -163548081 + FRAM SINE Alu 1 169 -7 2048 143 0 3 chr6 18867163 18867471 -163547771 + AluSx SINE Alu 2 308 -4 405 0 0 0 chr6 18867717 18867762 -163547480 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1791 122 68 0 chr6 18867764 18868027 -163547215 - AluJb SINE Alu -31 281 1 974 194 0 117 chr6 18868619 18868866 -163546376 - MLT1E1 LTR MaLR 0 624 407 2649 160 78 14 chr6 18868882 18869394 -163545848 - LTR10A LTR ERV1 -64 545 1 255 143 41 0 chr6 18869417 18869466 -163545776 - LTR10B LTR ERV1 -496 51 1 1745 217 27 93 chr6 18869466 18869948 -163545294 - MLT1E1 LTR MaLR -214 424 3 23 0 0 0 chr6 18870478 18870501 -163544741 + AT_rich Low_complexity Low_complexity 1 23 0 260 170 0 0 chr6 18870772 18870819 -163544423 - AluSq SINE Alu -1 301 255 1416 120 10 5 chr6 18870819 18871027 -163544215 - AluSq SINE Alu -104 209 1 30 59 0 0 chr6 18871138 18871189 -163544053 + AT_rich Low_complexity Low_complexity 1 51 0 324 282 40 8 chr6 18871219 18871343 -163543899 - L1M4 LINE L1 -2660 3486 3359 2331 58 41 0 chr6 18871384 18871676 -163543566 - AluY SINE Alu -4 307 4 329 184 0 13 chr6 18871765 18871817 -163543425 + (TA)n Simple_repeat Simple_repeat 2 54 -22 2344 62 0 16 chr6 18871817 18872124 -163543118 - AluY SINE Alu -9 302 1 329 184 0 13 chr6 18872124 18872147 -163543095 + (TA)n Simple_repeat Simple_repeat 54 76 0 5528 120 117 33 chr6 18872235 18873649 -163541593 + pTR5 LTR ERV1 743 2431 -7 242 360 38 11 chr6 18874607 18874793 -163540449 - L1MC/D LINE L1 -2055 5753 5563 23 33 0 0 chr6 18875128 18875158 -163540084 + AT_rich Low_complexity Low_complexity 1 30 0 1685 174 0 20 chr6 18876966 18877265 -163537977 + AluJb SINE Alu 1 293 -19 2177 92 11 0 chr6 18877270 18877554 -163537688 + AluSq SINE Alu 1 287 -26 1141 171 43 0 chr6 18877935 18878146 -163537096 + MLT2B1 LTR ERVL 1 220 -300 366 184 0 0 chr6 18878169 18878245 -163536997 + (CA)n Simple_repeat Simple_repeat 2 77 0 295 122 0 0 chr6 18878245 18878286 -163536956 + MLT2B1 LTR ERVL 367 407 -7 252 347 111 63 chr6 18878613 18878742 -163536500 + L2 LINE L2 2366 2487 -827 805 183 0 0 chr6 18878742 18878873 -163536369 + FLAM_C SINE Alu 1 131 -2 252 347 111 63 chr6 18878873 18879201 -163536041 + L2 LINE L2 2487 2845 -469 1626 185 10 26 chr6 18879311 18879613 -163535629 - AluJo SINE Alu -15 297 1 2528 53 0 3 chr6 18879623 18879926 -163535316 - AluY SINE Alu -9 302 1 244 325 117 75 chr6 18879941 18880181 -163535061 + L2 LINE L2 3005 3254 -18 667 270 17 17 chr6 18880307 18880485 -163534757 + MER5B DNA MER1_type 1 178 0 3560 116 19 106 chr6 18880735 18881008 -163534234 + Tigger4(Zombi) DNA MER2_type 1 296 -2435 1969 143 3 3 chr6 18881008 18881302 -163533940 - AluJo SINE Alu -18 294 1 3560 116 19 106 chr6 18881302 18881732 -163533510 + Tigger4(Zombi) DNA MER2_type 296 762 -1969 2189 100 0 3 chr6 18881732 18882021 -163533221 + AluSx SINE Alu 1 288 -24 3560 116 19 106 chr6 18882021 18882188 -163533054 + Tigger4(Zombi) DNA MER2_type 762 2730 -1 1126 260 126 34 chr6 18882315 18882785 -163532457 - MLT1K LTR MaLR -11 577 65 273 287 32 11 chr6 18883150 18883244 -163531998 - MLT1K LTR MaLR -490 98 3 1576 181 0 0 chr6 18883774 18884022 -163531220 - AluJb SINE Alu -64 248 1 238 254 45 0 chr6 18884023 18884090 -163531152 - L1ME LINE L1 -513 5608 5539 856 183 0 7 chr6 18884115 18884268 -163530974 - MER5A DNA MER1_type 0 189 38 450 233 8 29 chr6 18884406 18884651 -163530591 + CT-rich Low_complexity Low_complexity 1 239 0 1098 91 0 0 chr6 18884754 18884928 -163530314 + AluSg/x SINE Alu 140 313 0 260 188 16 31 chr6 18884985 18885049 -163530193 + MLT1K LTR MaLR 419 481 -107 272 139 0 0 chr6 18885062 18885105 -163530137 + AluSc SINE Alu 252 294 -5 204 202 0 83 chr6 18885171 18885255 -163529987 + T-rich Low_complexity Low_complexity 2 78 0 24 0 0 0 chr6 18885255 18885279 -163529963 + AT_rich Low_complexity Low_complexity 1 24 0 2184 116 0 0 chr6 18885408 18885702 -163529540 - AluSg SINE Alu -16 294 1 201 108 0 0 chr6 18886266 18886303 -163528939 + (TA)n Simple_repeat Simple_repeat 2 38 0 323 243 68 61 chr6 18886365 18886513 -163528729 - L1ME3A LINE L1 -59 6111 5963 832 239 41 21 chr6 18886569 18886812 -163528430 - L1MC5 LINE L1 -425 7536 7289 740 208 86 98 chr6 18886816 18887071 -163528171 - L1MC5 LINE L1 -1000 6961 6710 228 122 0 0 chr6 18887076 18887117 -163528125 + (TA)n Simple_repeat Simple_repeat 1 41 0 693 178 0 0 chr6 18887117 18887224 -163528018 + Tigger3(Golem) DNA MER2_type 2 108 -2921 469 145 0 0 chr6 18887224 18887293 -163527949 - AluJ/FRAM SINE Alu -12 300 232 4673 104 35 24 chr6 18887295 18888038 -163527204 + Tigger3(Golem) DNA MER2_type 2278 3028 -1 342 0 0 0 chr6 18888044 18888082 -163527160 + (TG)n Simple_repeat Simple_repeat 2 39 0 260 252 83 61 chr6 18888107 18888337 -163526905 - HAL1b LINE L1 -1113 235 1 207 304 71 0 chr6 18888478 18888534 -163526708 - L2 LINE L2 -45 3227 3168 1804 171 10 7 chr6 18888839 18889148 -163526094 + AluJb SINE Alu 1 310 -2 3148 130 58 67 chr6 18889164 18889432 -163525810 + MER39B LTR ERV1 1 270 -383 2376 77 6 13 chr6 18889432 18889745 -163525497 + AluSq SINE Alu 1 311 -2 3148 130 58 67 chr6 18889745 18889909 -163525333 + MER39B LTR ERV1 270 434 -219 2580 35 0 0 chr6 18889909 18890198 -163525044 - AluY SINE Alu -22 289 1 3148 130 58 67 chr6 18890198 18890418 -163524824 + MER39B LTR ERV1 434 648 -5 23 0 0 0 chr6 18891894 18891917 -163523325 + GC_rich Low_complexity Low_complexity 1 23 0 1729 133 7 28 chr6 18893056 18893342 -163521900 - AluSx SINE Alu -32 280 1 535 317 29 33 chr6 18894218 18894458 -163520784 - MIR SINE MIR 0 262 24 388 298 64 80 chr6 18894456 18894588 -163520654 + L2 LINE L2 2442 2575 -739 * 1883 148 7 33 chr6 18894588 18894891 -163520351 - AluJo SINE Alu -17 295 1 388 298 64 80 chr6 18894891 18895084 -163520158 + L2 LINE L2 2575 2762 -552 869 142 31 0 chr6 18895089 18895216 -163520026 - FLAM_C SINE Alu -2 131 1 313 200 0 31 chr6 18895284 18895349 -163519893 - AluY SINE Alu -112 189 127 584 316 89 60 chr6 18895350 18895764 -163519478 + L2 LINE L2 2847 3272 0 2219 117 3 10 chr6 18896078 18896385 -163518857 - AluSx SINE Alu -7 305 1 2482 73 0 0 chr6 18897203 18897505 -163517737 - AluY SINE Alu -9 302 1 2567 59 3 0 chr6 18897984 18898289 -163516953 + AluY SINE Alu 1 306 -5 336 269 77 0 chr6 18898329 18898433 -163516809 - MIR SINE MIR 0 262 151 319 258 40 19 chr6 18898538 18898662 -163516580 - MIR SINE MIR -95 167 2 251 305 114 42 chr6 18903669 18903836 -163511406 + MER5A DNA MER1_type 9 187 -2 1107 174 22 6 chr6 18903949 18904181 -163511061 + AluJo SINE Alu 1 278 -34 1611 110 5 0 chr6 18904317 18904535 -163510707 + AluSg SINE Alu 1 219 -91 2273 79 0 17 chr6 18904961 18905253 -163509989 + AluSg SINE Alu 1 287 -23 970 172 37 146 chr6 18905432 18905700 -163509542 - MER8 DNA MER2_type 0 239 1 2043 95 7 14 chr6 18907746 18908054 -163507188 - AluSc SINE Alu 0 306 1 1619 248 100 72 chr6 18908356 18908570 -163506672 + HAL1 LINE L1 204 411 -2096 1790 188 0 7 chr6 18908570 18908879 -163506363 + AluJo SINE Alu 5 311 -1 1619 248 100 72 chr6 18908879 18909568 -163505674 + HAL1 LINE L1 411 1080 -1427 2520 63 0 3 chr6 18909568 18909870 -163505372 - AluY SINE Alu -9 302 2 1619 248 100 72 chr6 18909870 18910528 -163504714 + HAL1 LINE L1 1080 1903 -604 654 128 59 10 chr6 18910538 18910640 -163504602 + U6 snRNA snRNA 1 107 0 5365 141 39 29 chr6 18910640 18910821 -163504421 + L1MA4 LINE L1 4458 4636 -1664 2292 105 7 0 chr6 18910821 18911127 -163504115 + AluSx SINE Alu 1 308 -4 5365 141 39 29 chr6 18911127 18911587 -163503655 + L1MA4 LINE L1 4636 5090 -1210 1231 138 78 23 chr6 18911587 18911805 -163503437 - MER30 DNA MER1_type 0 230 1 5365 141 39 29 chr6 18911805 18912938 -163502304 + L1MA4 LINE L1 5090 6253 -47 24 77 0 0 chr6 18912941 18912993 -163502249 + AT_rich Low_complexity Low_complexity 1 52 0 1546 173 0 58 chr6 18913173 18913485 -163501757 + AluJb SINE Alu 1 294 -18 314 275 117 0 chr6 18913693 18913813 -163501429 + HAL1 LINE L1 2007 2140 -367 2243 108 0 0 chr6 18913854 18914151 -163501091 + AluY SINE Alu 1 297 -14 1035 258 118 3 chr6 18914436 18914816 -163500426 + L1ME3A LINE L1 5527 5950 -220 2217 113 17 0 chr6 18916260 18916561 -163498681 + AluSg SINE Alu 1 306 -4 323 266 84 52 chr6 18917686 18917840 -163497402 - L1M4 LINE L1 -1372 4774 4616 929 194 0 16 chr6 18918493 18918679 -163496563 - AluSg/x SINE Alu -7 303 121 330 266 130 0 chr6 18918686 18918863 -163496379 - HAL1 LINE L1 -904 1603 1404 180 0 0 0 chr6 18919625 18919645 -163495597 + (TAA)n Simple_repeat Simple_repeat 2 21 0 656 296 47 16 chr6 18920741 18920994 -163494248 + L1MC4a LINE L1 5427 5687 -2121 300 268 120 56 chr6 18921000 18921250 -163493992 + L1MC4a LINE L1 5804 6069 -1739 2025 141 7 10 chr6 18921383 18921688 -163493554 + AluSx SINE Alu 1 304 -8 548 140 40 13 chr6 18921689 18921839 -163493403 + GA-rich Low_complexity Low_complexity 3 156 0 525 248 85 57 chr6 18922085 18922331 -163492911 - MER112 DNA MER1_type 0 256 4 1077 180 106 8 chr6 18922362 18922617 -163492625 - L1PB4 LINE L1 0 6156 5877 2301 81 3 3 chr6 18922690 18922987 -163492255 + AluY SINE Alu 1 297 -14 963 125 21 0 chr6 18923162 18923353 -163491889 + AluSg/x SINE Alu 136 329 0 219 206 27 55 chr6 18925348 18925421 -163489821 + L2 LINE L2 2187 2257 -1057 2171 125 0 0 chr6 18925447 18925742 -163489500 - AluSx SINE Alu -17 295 1 1111 134 9 86 chr6 18925863 18926095 -163489147 + MER30 DNA MER1_type 1 214 -16 2584 62 0 0 chr6 18926110 18926414 -163488828 - AluY SINE Alu -7 304 1 1713 181 11 0 chr6 18926422 18926704 -163488538 - AluJb SINE Alu -27 285 1 217 378 35 21 chr6 18926704 18926839 -163488403 + L2 LINE L2 2600 2739 -575 2176 133 0 3 chr6 18927057 18927357 -163487885 + AluSx SINE Alu 1 299 -13 276 261 91 0 chr6 18929838 18929926 -163485316 + MIR3 SINE MIR 64 159 -49 2231 119 0 3 chr6 18930072 18930383 -163484859 - AluSx SINE Alu -1 311 2 21 0 0 0 chr6 18931073 18931094 -163484148 + AT_rich Low_complexity Low_complexity 1 21 0 1453 203 7 21 chr6 18931647 18931928 -163483314 - AluJo SINE Alu -35 277 1 2175 103 0 3 chr6 18932259 18932574 -163482668 + AluSc SINE Alu 1 314 0 2080 105 16 10 chr6 18932576 18932881 -163482361 + AluY SINE Alu 1 307 -4 3603 184 85 5 chr6 18933061 18934184 -163481058 + L1MB5 LINE L1 4960 6166 -8 1937 113 4 0 chr6 18934196 18934462 -163480780 + AluSx SINE Alu 1 267 -45 1903 102 40 40 chr6 18935666 18935809 -163479433 + AluSx SINE Alu 1 143 -169 2147 103 3 10 chr6 18935809 18936110 -163479132 + AluY SINE Alu 1 299 -12 1903 102 40 40 chr6 18936110 18936269 -163478973 + AluSx SINE Alu 142 303 -9 1468 176 14 41 chr6 18936301 18936596 -163478646 - AluJo SINE Alu -13 299 13 2292 78 3 0 chr6 18937217 18937511 -163477731 - AluY SINE Alu -16 295 1 306 182 34 128 chr6 18937551 18937699 -163477543 + MER104 DNA Tc2 6 139 -41 2135 123 0 52 chr6 18937737 18938062 -163477180 - AluSq SINE Alu -5 308 1 288 316 137 0 chr6 18938064 18938254 -163476988 + L1MC4 LINE L1 6789 7004 -1038 445 219 98 101 chr6 18938288 18938635 -163476607 + L1MC4 LINE L1 7573 7918 -124 232 229 0 0 chr6 18938709 18938757 -163476485 + HsTC2 DNA Tc2 1848 1895 -3 1554 181 20 46 chr6 18939209 18939340 -163475902 + AluJo SINE Alu 1 134 -178 2271 103 0 16 chr6 18939340 18939650 -163475592 + AluSx SINE Alu 1 305 -7 1554 181 20 46 chr6 18939650 18939821 -163475421 + AluJo SINE Alu 134 295 -17 346 248 54 74 chr6 18940408 18940557 -163474685 + MIR SINE MIR 12 157 -105 1659 149 54 6 chr6 18940608 18940923 -163474319 + MER44D DNA MER2_type 2 601 -8 560 238 49 11 chr6 18941075 18941260 -163473982 + L1ME2 LINE L1 138 329 -5876 333 259 130 6 chr6 18941329 18941491 -163473751 + L1ME2 LINE L1 449 630 -5575 881 261 60 56 chr6 18941769 18942046 -163473196 + L1ME2 LINE L1 1841 2115 -4100 1565 157 28 24 chr6 18942046 18942333 -163472909 + AluJo SINE Alu 22 309 -3 881 261 60 56 chr6 18942333 18942817 -163472425 + L1ME2 LINE L1 2115 2566 -3649 312 202 0 6 chr6 18942817 18943079 -163472163 + AluJo SINE Alu 1 306 0 656 213 150 50 chr6 18943081 18943462 -163471780 + L1ME2 LINE L1 2576 2994 -3221 * 825 234 95 14 chr6 18943432 18943746 -163471496 + L1ME2 LINE L1 5042 5329 -904 1934 94 4 26 chr6 18943746 18944011 -163471231 + AluSx SINE Alu 1 259 -53 1700 137 4 4 chr6 18944013 18944268 -163470974 + AluSx SINE Alu 38 292 -20 825 234 95 14 chr6 18944268 18944895 -163470347 + L1ME2 LINE L1 5329 6214 -19 328 229 127 93 chr6 18944943 18945148 -163470094 + L1MC4 LINE L1 7829 8040 -2 2252 92 7 0 chr6 18945330 18945625 -163469617 - AluSq SINE Alu -16 297 1 278 200 212 0 chr6 18945824 18945909 -163469333 - MIR SINE MIR -94 168 66 477 102 57 57 chr6 18945935 18946023 -163469219 - MIR SINE MIR -108 154 67 2277 98 0 3 chr6 18946464 18946760 -163468482 - AluSx SINE Alu -17 295 1 2114 124 7 0 chr6 18946928 18947227 -163468015 + AluSx SINE Alu 1 301 -11 831 194 0 12 chr6 18947468 18947628 -163467614 - AluJb SINE Alu -100 212 55 343 229 103 37 chr6 18947638 18947857 -163467385 - LTR45 LTR ERV1 -53 557 325 23 0 0 0 chr6 18948206 18948229 -163467013 + AT_rich Low_complexity Low_complexity 1 23 0 1721 125 22 84 chr6 18948265 18948585 -163466657 + AluSx SINE Alu 1 300 -12 259 95 24 0 chr6 18948586 18948628 -163466614 + LTR45 LTR ERV1 465 507 -18 2186 95 21 6 chr6 18948785 18949123 -163466119 + HSMAR1 DNA Mariner 1 343 -944 1847 132 25 4 chr6 18949123 18949403 -163465839 + AluSx SINE Alu 1 286 -26 234 0 0 0 chr6 18949406 18949432 -163465810 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6355 96 17 28 chr6 18949467 18950433 -163464809 + HSMAR1 DNA Mariner 333 1287 0 2414 100 0 0 chr6 18950467 18950776 -163464466 - AluSc SINE Alu 0 309 1 310 284 63 16 chr6 18951254 18951381 -163463861 + L1M4 LINE L1 2852 2984 -3162 233 228 0 0 chr6 18951554 18951611 -163463631 + (TA)n Simple_repeat Simple_repeat 2 58 0 304 228 11 47 chr6 18951712 18951837 -163463405 + L1ME LINE L1 5539 5659 -503 2005 139 3 0 chr6 18952038 18952332 -163462910 + AluSx SINE Alu 1 295 -17 632 217 16 0 chr6 18953446 18953575 -163461667 + L1MC4a LINE L1 6715 6845 -963 * 1628 211 136 33 chr6 18953565 18954138 -163461104 + L1MC4 LINE L1 7197 7828 -214 261 0 0 0 chr6 18954238 18954267 -163460975 + (CA)n Simple_repeat Simple_repeat 2 30 0 1611 198 0 7 chr6 18954281 18954559 -163460683 - AluJo SINE Alu -26 286 11 238 266 0 13 chr6 18954622 18954701 -163460541 + L1MC4 LINE L1 7925 8002 -40 339 172 0 0 chr6 18954815 18954879 -163460363 + L1MC4 LINE L1 7501 7564 -478 1164 102 6 175 chr6 18954881 18955196 -163460046 + L1MB8 LINE L1 5617 5878 -306 342 127 42 0 chr6 18955331 18955402 -163459840 + L1MB8 LINE L1 6093 6166 -12 253 270 213 14 chr6 18955449 18955660 -163459582 + L1MC5 LINE L1 7530 7782 -179 2288 105 0 0 chr6 18955776 18956071 -163459171 + AluSx SINE Alu 1 295 -17 468 172 269 15 chr6 18956723 18956857 -163458385 - AluJb SINE Alu -11 301 134 1349 178 120 18 chr6 18956857 18957132 -163458110 - AluJo SINE Alu -9 303 1 2048 125 10 0 chr6 18957240 18957537 -163457705 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr6 18958356 18958389 -163456853 + AT_rich Low_complexity Low_complexity 1 33 0 2153 120 0 7 chr6 18958438 18958746 -163456496 + AluY SINE Alu 1 306 -5 2350 93 0 13 chr6 18959075 18959385 -163455857 - AluSx SINE Alu -6 306 1 1877 159 3 0 chr6 18959567 18959862 -163455380 + AluSx SINE Alu 1 296 -16 1445 81 0 0 chr6 18960087 18960260 -163454982 - AluSg/x SINE Alu -15 295 123 2108 123 3 10 chr6 18960817 18961126 -163454116 + AluSx SINE Alu 1 307 -5 2387 234 64 31 chr6 18961355 18961812 -163453430 - L1M4 LINE L1 -1809 4337 3896 2229 108 24 0 chr6 18961812 18962109 -163453133 - AluSx SINE Alu -8 304 1 2387 234 64 31 chr6 18962109 18962508 -163452734 - L1M4 LINE L1 -2250 3896 3453 1588 209 26 68 chr6 18962530 18962730 -163452512 + L1ME1 LINE L1 4400 4607 -1539 2118 135 0 3 chr6 18962730 18963026 -163452216 + AluSx SINE Alu 1 295 -17 1588 209 26 68 chr6 18963026 18963301 -163451941 + L1ME1 LINE L1 4607 4850 -1296 1786 163 10 3 chr6 18963301 18963590 -163451652 + AluJo SINE Alu 1 291 -21 1588 209 26 68 chr6 18963590 18963686 -163451556 + L1ME1 LINE L1 4850 4948 -1198 636 160 0 0 chr6 18963719 18963813 -163451429 + FLAM_C SINE Alu 18 111 -32 2783 180 81 54 chr6 18963853 18964040 -163451202 + L1ME1 LINE L1 4945 5126 -1040 204 40 0 0 chr6 18964040 18964065 -163451177 + (CA)n Simple_repeat Simple_repeat 2 26 0 2783 180 81 54 chr6 18964065 18964092 -163451150 + L1ME1 LINE L1 5126 5151 -1015 1894 108 61 7 chr6 18964092 18964370 -163450872 + AluSg1 SINE Alu 1 293 -16 2783 180 81 54 chr6 18964370 18965347 -163449895 + L1ME1 LINE L1 5151 6166 0 2114 101 3 25 chr6 18965492 18965808 -163449434 + AluSc SINE Alu 1 309 0 534 176 0 29 chr6 18966074 18966176 -163449066 + AluSg/x SINE Alu 198 296 -13 310 293 14 29 chr6 18967179 18967319 -163447923 - L1P LINE L1 -1131 5015 4878 30 0 0 0 chr6 18967483 18967513 -163447729 + AT_rich Low_complexity Low_complexity 1 30 0 241 292 11 11 chr6 18967611 18967700 -163447542 + L1ME LINE L1 173 261 -5944 * 348 324 86 50 chr6 18967675 18967897 -163447345 + L1ME LINE L1 148 377 -6019 380 204 91 8 chr6 18968280 18968412 -163446830 + L1ME LINE L1 666 808 -5397 700 88 20 0 chr6 18968726 18968828 -163446414 - AluSg/x SINE Alu -1 311 208 263 316 25 0 chr6 18968996 18969075 -163446167 - L1M4 LINE L1 -2036 4110 4030 2123 136 10 0 chr6 18969079 18969381 -163445861 + AluSx SINE Alu 1 305 -7 1987 136 7 17 chr6 18969667 18969969 -163445273 + AluJo SINE Alu 1 299 -13 1976 225 73 2 chr6 18970123 18970660 -163444582 + L1MA3 LINE L1 4205 4779 -1367 2942 164 47 15 chr6 18970720 18971249 -163443993 + LTR35 LTR ERV1 73 618 0 1986 224 37 2 chr6 18971254 18971740 -163443502 + L1MA3 LINE L1 4781 5283 -863 2838 134 39 48 chr6 18971741 18972279 -163442963 + L1MA3 LINE L1 5453 5985 -315 280 79 0 0 chr6 18972281 18972319 -163442923 + L1MA3 LINE L1 5953 5990 -315 2239 79 14 3 chr6 18972320 18972610 -163442632 + AluY SINE Alu 11 303 -8 1052 192 5 15 chr6 18972930 18973128 -163442114 + AluJo SINE Alu 1 196 -116 13422 138 35 33 chr6 18973129 18973643 -163441599 - Tigger1 DNA MER2_type -64 2354 1843 2051 134 7 3 chr6 18973643 18973948 -163441294 + AluSg SINE Alu 2 307 -3 13422 138 35 33 chr6 18973948 18974863 -163440379 - Tigger1 DNA MER2_type -575 1843 916 1965 165 95 13 chr6 18974863 18975251 -163439991 + MSTB LTR MaLR 5 424 -2 13422 138 35 33 chr6 18975251 18976140 -163439102 - Tigger1 DNA MER2_type -1502 916 30 21 0 0 0 chr6 18976145 18976166 -163439076 + AT_rich Low_complexity Low_complexity 1 21 0 2606 174 40 55 chr6 18976242 18976275 -163438967 + Tigger3b DNA MER2_type 2 34 -2994 2354 78 0 7 chr6 18976275 18976571 -163438671 + AluY SINE Alu 5 298 -13 2606 174 40 55 chr6 18976571 18976879 -163438363 + Tigger3b DNA MER2_type 34 345 -2683 1709 158 11 11 chr6 18976879 18977152 -163438090 + AluJb SINE Alu 9 281 -31 258 32 0 0 chr6 18977155 18977186 -163438056 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2606 174 40 55 chr6 18977186 18977396 -163437846 + Tigger3b DNA MER2_type 347 551 -2477 2338 61 7 0 chr6 18977396 18977675 -163437567 - AluY SINE Alu -5 306 26 2606 174 40 55 chr6 18977675 18977721 -163437521 + Tigger3b DNA MER2_type 551 596 -635 231 191 36 83 chr6 18977800 18977884 -163437358 + L1MC5 LINE L1 7782 7861 -100 26 30 0 0 chr6 18977884 18977917 -163437325 + GC_rich Low_complexity Low_complexity 1 33 0 2428 82 3 16 chr6 18978838 18979153 -163436089 + AluY SINE Alu 1 311 0 1829 136 0 4 chr6 18980109 18980366 -163434876 + AluSp SINE Alu 1 256 -57 2300 69 42 0 chr6 18980541 18980829 -163434413 - AluSp SINE Alu -13 300 1 491 229 115 25 chr6 18980892 18981049 -163434193 - MIR SINE MIR -14 248 78 1995 62 7 98 chr6 18981088 18981394 -163433848 + AluY SINE Alu 14 291 -20 2192 108 0 33 chr6 18981862 18982169 -163433073 + AluSg SINE Alu 1 297 -13 1906 123 65 10 chr6 18982487 18982779 -163432463 + AluSx SINE Alu 1 308 -4 618 162 138 48 chr6 18982827 18982994 -163432248 - AluJo SINE Alu -16 296 115 971 167 26 0 chr6 18983382 18983538 -163431704 + FRAM SINE Alu 11 170 -6 273 218 263 38 chr6 18983694 18983827 -163431415 + MER5A DNA MER1_type 2 164 -25 306 0 0 0 chr6 18984188 18984222 -163431020 + (CA)n Simple_repeat Simple_repeat 2 35 0 239 276 218 26 chr6 18984254 18984410 -163430832 + LTR33 LTR ERVL 32 217 -304 275 242 48 0 chr6 18984470 18984532 -163430710 + LTR33A LTR ERVL 325 389 -134 1983 97 4 0 chr6 18984609 18984866 -163430376 + AluSx SINE Alu 1 258 -54 23 54 0 0 chr6 18985000 18985037 -163430205 + AT_rich Low_complexity Low_complexity 1 37 0 491 237 86 38 chr6 18985064 18985250 -163429992 + L2 LINE L2 3119 3313 0 2271 107 7 0 chr6 18985381 18985689 -163429553 + AluSx SINE Alu 1 310 -2 2016 127 0 13 chr6 18985699 18985998 -163429244 + AluSg SINE Alu 1 295 -15 373 248 0 12 chr6 18986246 18986375 -163428867 + MER5A DNA MER1_type 1 188 -1 2561 75 0 0 chr6 18986732 18987037 -163428205 + AluY SINE Alu 1 305 -6 409 100 33 0 chr6 18987083 18987143 -163428099 + AluSp/q SINE Alu 234 295 -18 2479 82 0 0 chr6 18987478 18987784 -163427458 + AluY SINE Alu 1 306 -5 2204 109 7 0 chr6 18987795 18988088 -163427154 + AluSx SINE Alu 1 295 -17 2205 103 0 7 chr6 18988408 18988700 -163426542 + AluSx SINE Alu 1 290 -22 1375 144 101 25 chr6 18989317 18989461 -163425781 + AluSx SINE Alu 3 135 -177 2583 60 0 0 chr6 18989461 18989761 -163425481 + AluY SINE Alu 1 300 -11 1375 144 101 25 chr6 18989761 18989893 -163425349 + AluSx SINE Alu 135 300 -12 25 0 0 0 chr6 18990188 18990213 -163425029 + AT_rich Low_complexity Low_complexity 1 25 0 1987 118 49 3 chr6 18990219 18990507 -163424735 + AluSg SINE Alu 1 301 -9 2048 129 7 0 chr6 18990559 18990853 -163424389 + AluSx SINE Alu 1 296 -16 322 98 78 0 chr6 18991139 18991190 -163424052 + LTR8 LTR ERV1 533 587 -104 225 213 415 37 chr6 18991289 18991453 -163423789 - MIR SINE MIR -31 231 6 566 180 197 39 chr6 18991722 18991900 -163423342 + MER58C DNA MER1_type 10 215 0 2206 92 3 20 chr6 18991950 18992244 -163422998 + AluSp SINE Alu 9 297 -16 1992 121 3 14 chr6 18992253 18992386 -163422856 + AluSg SINE Alu 2 135 -175 2339 109 0 0 chr6 18992386 18992689 -163422553 + AluSg1 SINE Alu 1 303 -6 1992 121 3 14 chr6 18992689 18992837 -163422405 + AluSg SINE Alu 135 280 -30 2487 63 0 3 chr6 18993230 18993531 -163421711 + AluY SINE Alu 1 300 -11 1212 127 0 0 chr6 18993533 18993706 -163421536 + AluSp SINE Alu 136 308 -5 2360 78 10 10 chr6 18993922 18994231 -163421011 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr6 18994646 18994674 -163420568 + AT_rich Low_complexity Low_complexity 1 28 0 2609 47 0 0 chr6 18995015 18995312 -163419930 + AluY SINE Alu 1 297 -14 2289 61 14 10 chr6 18995764 18996061 -163419181 - AluYa5 SINE Alu -13 298 1 23 0 0 0 chr6 18997469 18997492 -163417750 + GC_rich Low_complexity Low_complexity 1 23 0 271 350 6 6 chr6 18997757 18997920 -163417322 + (CCG)n Simple_repeat Simple_repeat 3 165 0 425 305 53 0 chr6 18998405 18998556 -163416686 + MIR SINE MIR 50 208 -54 280 331 37 7 chr6 18998753 18998889 -163416353 - MIR3 SINE MIR -28 180 41 2232 117 0 13 chr6 18998968 18999284 -163415958 - AluSx SINE Alu 0 312 1 345 231 77 82 chr6 18999297 18999343 -163415899 + MIR SINE MIR 66 111 -151 2245 73 37 13 chr6 18999343 18999643 -163415599 - AluSp SINE Alu -6 307 1 345 231 77 82 chr6 18999643 18999778 -163415464 + MIR SINE MIR 111 246 -16 2107 102 3 30 chr6 19000880 19001183 -163414059 + AluSx SINE Alu 1 295 -17 237 65 0 0 chr6 19001195 19001226 -163414016 + (TA)n Simple_repeat Simple_repeat 1 31 0 1574 179 66 0 chr6 19001501 19001802 -163413440 + Tigger3(Golem) DNA MER2_type 1 321 -2708 1968 155 3 3 chr6 19001849 19002152 -163413090 + AluJo SINE Alu 1 303 -9 221 0 35 0 chr6 19002165 19002194 -163413048 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2097 127 3 7 chr6 19002800 19003100 -163412142 + AluSx SINE Alu 1 299 -13 2496 66 0 22 chr6 19003155 19003472 -163411770 + AluY SINE Alu 1 310 -1 204 186 248 53 chr6 19003786 19003899 -163411343 + MER5A DNA MER1_type 23 157 -32 2415 51 0 51 chr6 19004766 19005082 -163410160 - AluY SINE Alu -11 300 1 207 0 0 0 chr6 19005852 19005875 -163409367 + (A)n Simple_repeat Simple_repeat 1 23 0 1769 98 4 4 chr6 19006721 19006956 -163408286 + AluSp SINE Alu 65 299 -14 198 0 0 0 chr6 19007014 19007036 -163408206 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 1223 124 0 6 chr6 19007053 19007230 -163408012 - AluSg/x SINE Alu -21 291 116 2608 51 0 0 chr6 19008051 19008347 -163406895 - AluY SINE Alu -15 296 1 2598 72 0 0 chr6 19008462 19008769 -163406473 + AluSc SINE Alu 1 307 -2 1362 182 16 23 chr6 19008783 19009041 -163406201 + AluJo SINE Alu 34 289 -23 198 0 0 0 chr6 19009284 19009306 -163405936 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 1223 124 0 6 chr6 19009323 19009500 -163405742 - AluSg/x SINE Alu -21 291 116 2350 89 3 0 chr6 19010321 19010614 -163404628 - AluSq SINE Alu -15 298 5 1938 156 3 0 chr6 19010834 19011129 -163404113 - AluSx SINE Alu -16 296 1 1958 141 14 3 chr6 19011131 19011422 -163403820 - AluJo SINE Alu -18 294 1 435 19 0 0 chr6 19011651 19011703 -163403539 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 216 227 118 4 chr6 19011800 19011871 -163403371 - MIR SINE MIR -110 98 34 338 197 103 60 chr6 19012138 19012255 -163402987 + MER53 DNA DNA 3 124 -65 243 0 0 0 chr6 19012299 19012326 -163402916 + (TA)n Simple_repeat Simple_repeat 1 27 0 1226 109 6 11 chr6 19012326 19012501 -163402741 - AluSg/x SINE Alu -5 307 134 2350 85 7 0 chr6 19012501 19012795 -163402447 - AluY SINE Alu -15 296 1 1117 158 84 0 chr6 19013047 19013249 -163401993 - AluJb SINE Alu -9 303 85 1928 109 64 0 chr6 19013293 19013581 -163401661 - AluY SINE Alu 0 305 1 795 132 0 0 chr6 19013936 19014050 -163401192 - 5S rRNA rRNA -1 120 7 2324 97 13 0 chr6 19014515 19014814 -163400428 - AluSx SINE Alu -9 303 1 207 0 0 0 chr6 19014923 19014946 -163400296 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 1800 171 0 17 chr6 19014947 19015234 -163400008 - AluJb SINE Alu -30 282 1 245 292 94 0 chr6 19015238 19015334 -163399908 + MER5A DNA MER1_type 49 153 -36 2092 77 25 32 chr6 19015592 19015898 -163399344 - AluSp SINE Alu 0 304 1 963 198 6 0 chr6 19016021 19016188 -163399054 + FAM SINE Alu 1 168 -7 279 0 0 0 chr6 19016194 19016225 -163399017 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 702 188 8 16 chr6 19016794 19016922 -163398320 + FLAM_C SINE Alu 2 128 -5 27 0 0 0 chr6 19017691 19017718 -163397524 + AT_rich Low_complexity Low_complexity 1 27 0 2161 108 7 13 chr6 19017797 19018103 -163397139 + AluSx SINE Alu 1 304 -8 2725 30 0 0 chr6 19018103 19018402 -163396840 + AluY SINE Alu 1 299 -12 253 302 85 9 chr6 19018402 19018508 -163396734 - MIR SINE MIR -79 129 16 2024 106 8 0 chr6 19018585 19018866 -163396376 + AluSg SINE Alu 1 266 -44 304 254 0 192 chr6 19018948 19019141 -163396101 - MIR SINE MIR -6 256 101 808 148 15 22 chr6 19019142 19019277 -163395965 + AluJo SINE Alu 2 135 -177 2144 67 0 37 chr6 19019351 19019650 -163395592 - AluY SINE Alu -21 290 3 343 301 62 17 chr6 19019983 19020159 -163395083 - L3 LINE CR1 -171 1406 1223 302 321 95 22 chr6 19020191 19020328 -163394914 + HAL1 LINE L1 1 147 -2360 2202 61 4 0 chr6 19020328 19020637 -163394605 - AluY SINE Alu 0 310 1 723 105 0 0 chr6 19020637 19020742 -163394500 - AluSg/x SINE Alu -2 308 204 3975 177 72 60 chr6 19020742 19021975 -163393267 + pTR5 LTR ERV1 57 582 -132 1046 159 24 29 chr6 19021975 19022182 -163393060 - AluSc SINE Alu -103 206 1 254 139 70 0 chr6 19022652 19022695 -163392547 + Tigger7 DNA MER2_type 225 270 -463 582 168 0 21 chr6 19022695 19022790 -163392452 + Tigger7 DNA MER2_type 2399 2491 0 481 79 0 0 chr6 19023011 19023074 -163392168 - U2 snRNA snRNA -125 63 1 812 235 12 0 chr6 19023125 19023287 -163391955 - FRAM SINE Alu -1 165 2 346 269 65 0 chr6 19023394 19023502 -163391740 - HAL1 LINE L1 -918 1589 1475 2158 123 3 0 chr6 19023506 19023814 -163391428 - AluSx SINE Alu -3 309 1 2012 87 52 3 chr6 19023829 19024117 -163391125 - AluY SINE Alu -9 302 1 40 0 0 0 chr6 19024117 19024157 -163391085 + AT_rich Low_complexity Low_complexity 1 40 0 2271 70 0 0 chr6 19024157 19024442 -163390800 - AluY SINE Alu -26 285 1 784 141 7 22 chr6 19024448 19024583 -163390659 - AluSq/x SINE Alu -179 134 2 373 251 29 3 chr6 19024584 19024694 -163390548 - L1MCa LINE L1 -4894 1713 1415 773 263 65 65 chr6 19024708 19025004 -163390238 - L1MCa LINE L1 -4872 1544 1246 1599 167 44 0 chr6 19025004 19025279 -163389963 - AluJo SINE Alu -23 289 3 773 263 65 65 chr6 19025279 19025567 -163389675 - L1MCa LINE L1 -5169 1247 960 248 146 0 0 chr6 19025569 19025610 -163389632 - L1 LINE L1 -3051 4116 4076 1971 107 0 48 chr6 19025611 19025920 -163389322 - AluSq SINE Alu -19 294 1 881 160 82 124 chr6 19025920 19026226 -163389016 - L1 LINE L1 -3267 3900 3608 1056 68 0 0 chr6 19026226 19026358 -163388884 - AluY SINE Alu -179 132 1 547 196 42 65 chr6 19026358 19026453 -163388789 - L1 LINE L1 -3539 3628 3537 2218 103 3 0 chr6 19026453 19026753 -163388489 - AluSp SINE Alu -12 301 1 547 196 42 65 chr6 19026753 19026825 -163388417 - L1 LINE L1 -3630 3537 3465 5984 60 48 8 chr6 19026828 19027656 -163387586 - SVA Other Other -8 1378 518 5511 71 22 56 chr6 19028037 19029039 -163386203 - SVA Other Other -520 866 1 1025 184 12 106 chr6 19029052 19029213 -163386029 - L1 LINE L1 -3694 3473 3299 1800 172 0 0 chr6 19029213 19029510 -163385732 - AluJo SINE Alu -10 302 6 1025 184 12 106 chr6 19029510 19029612 -163385630 - L1 LINE L1 -3868 3299 3243 1771 127 49 7 chr6 19029612 19029896 -163385346 - AluSx SINE Alu -16 296 1 1025 184 12 106 chr6 19029896 19029952 -163385290 - L1 LINE L1 -3924 3243 3183 743 73 0 0 chr6 19029964 19030060 -163385182 - HY3 scRNA scRNA -1 100 5 3219 154 32 15 chr6 19030062 19030679 -163384563 - L1 LINE L1 -3957 3211 2584 246 51 51 0 chr6 19030672 19030711 -163384531 - L1 LINE L1 -4893 2275 2235 * 207 280 85 42 chr6 19031024 19031142 -163384100 - MIR SINE MIR -56 206 84 5209 199 99 98 chr6 19031775 19032070 -163383172 - L1 LINE L1 -4939 2229 1936 518 233 92 0 chr6 19032070 19032190 -163383052 - FLAM_A SINE Alu -11 131 1 1677 115 12 112 chr6 19032194 19032532 -163382710 - AluSq SINE Alu -9 304 1 5209 199 99 98 chr6 19032532 19033735 -163381507 - L1 LINE L1 -5234 1934 661 2100 101 3 3 chr6 19033735 19034041 -163381201 - AluSx SINE Alu -6 306 1 5209 199 99 98 chr6 19034041 19034624 -163380618 - L1 LINE L1 -6507 661 80 732 68 10 4 chr6 19034624 19034830 -163380412 + AluSx SINE Alu 1 290 -19 382 184 158 0 chr6 19034830 19034906 -163380336 - L1 LINE L1 -7080 88 1 1808 114 48 4 chr6 19035049 19035355 -163379887 - AluSq SINE Alu 0 318 1 378 316 43 48 chr6 19035368 19035397 -163379845 + L1M4 LINE L1 4633 4661 -1485 750 187 0 8 chr6 19035397 19035531 -163379711 + FLAM_A SINE Alu 1 133 0 378 316 43 48 chr6 19035531 19035582 -163379660 + L1M4 LINE L1 4661 4711 -1435 1662 141 53 3 chr6 19035582 19035865 -163379377 + AluJb SINE Alu 1 297 -15 378 316 43 48 chr6 19035865 19035970 -163379272 + L1M4 LINE L1 4711 4818 -1328 200 281 49 12 chr6 19036500 19036582 -163378660 - L2 LINE L2 -215 3057 2973 638 137 0 76 chr6 19036637 19036768 -163378474 - FRAM SINE Alu -13 163 43 5746 130 82 99 chr6 19036784 19038372 -163376870 - pTR5 LTR ERV1 0 2438 743 1896 168 0 0 chr6 19038409 19038713 -163376529 + AluJb SINE Alu 1 304 -8 2032 124 0 7 chr6 19038833 19039131 -163376111 - AluSx SINE Alu -16 296 1 388 291 120 6 chr6 19039141 19039299 -163375943 + MIR SINE MIR 31 206 -56 2142 115 0 0 chr6 19039435 19039731 -163375511 + AluSg SINE Alu 1 296 -14 195 268 49 37 chr6 19039850 19039932 -163375310 + L2 LINE L2 2336 2418 -896 685 129 0 102 chr6 19040068 19040215 -163375027 - AluJb SINE Alu 0 312 181 306 0 0 0 chr6 19040276 19040310 -163374932 + (CA)n Simple_repeat Simple_repeat 2 35 0 2266 158 84 17 chr6 19040311 19040338 -163374904 - L1MC3 LINE L1 -173 7612 7588 2170 101 0 0 chr6 19040338 19040634 -163374608 - AluSg1 SINE Alu -13 296 1 2266 158 84 17 chr6 19040634 19041068 -163374174 - L1MC3 LINE L1 -197 7588 7120 2251 54 44 7 chr6 19041081 19041376 -163373866 - AluY SINE Alu -5 306 1 2177 86 14 0 chr6 19041377 19041667 -163373575 - AluSx SINE Alu -18 294 1 1977 129 0 3 chr6 19041733 19042028 -163373214 + AluSx SINE Alu 1 294 -18 2092 96 3 20 chr6 19042289 19042454 -163372788 - AluSx SINE Alu -14 298 132 2396 65 3 0 chr6 19042454 19042762 -163372480 - AluY SINE Alu -1 310 2 198 0 0 0 chr6 19042762 19042784 -163372458 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1957 110 4 7 chr6 19042784 19043065 -163372177 - AluSc SINE Alu -29 280 1 2092 96 3 20 chr6 19043065 19043200 -163372042 - AluSx SINE Alu -177 135 1 2056 84 70 0 chr6 19043276 19043563 -163371679 - AluSg SINE Alu -3 307 1 2082 71 57 4 chr6 19043578 19043859 -163371383 - AluY SINE Alu -15 296 1 531 244 23 8 chr6 19043896 19044027 -163371215 + MIR SINE MIR 81 213 -49 2007 134 3 0 chr6 19044057 19044356 -163370886 - AluSx SINE Alu -12 300 1 204 128 0 0 chr6 19044374 19044394 -163370848 + (A)n Simple_repeat Simple_repeat 1 20 -19 653 191 29 52 chr6 19044394 19044530 -163370712 + FLAM_C SINE Alu 1 133 0 204 128 0 0 chr6 19044530 19044548 -163370694 + (A)n Simple_repeat Simple_repeat 19 39 0 2026 113 3 10 chr6 19044986 19045278 -163369964 - AluSq SINE Alu -23 290 1 26 0 0 0 chr6 19045915 19045941 -163369301 + AT_rich Low_complexity Low_complexity 1 26 0 1254 183 3 69 chr6 19046319 19046608 -163368634 + AluJb SINE Alu 1 270 -42 1377 182 45 38 chr6 19046845 19047200 -163368042 + MLT1F1 LTR MaLR 1 391 -151 1191 123 0 0 chr6 19047298 19047468 -163367774 - AluSg/x SINE Alu -9 301 132 2120 129 0 0 chr6 19047468 19047778 -163367464 - AluSx SINE Alu -2 310 1 26 30 0 0 chr6 19047889 19047922 -163367320 + AT_rich Low_complexity Low_complexity 1 33 0 1307 160 71 15 chr6 19047999 19048268 -163366974 - Charlie1b DNA MER1_type -239 284 1 188 322 167 0 chr6 19048269 19048359 -163366883 - MIR3 SINE MIR -49 159 55 2321 57 7 3 chr6 19048934 19049231 -163366011 + AluY SINE Alu 1 298 -13 2216 100 7 3 chr6 19049331 19049640 -163365602 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr6 19049760 19049782 -163365460 + AT_rich Low_complexity Low_complexity 1 22 0 2344 97 0 0 chr6 19049782 19050092 -163365150 - AluSx SINE Alu -2 310 1 2457 46 3 3 chr6 19050161 19050467 -163364775 - AluY SINE Alu -5 306 1 577 231 51 39 chr6 19051505 19051661 -163363581 + MIR SINE MIR 105 262 0 186 43 0 0 chr6 19051784 19051807 -163363435 + (CA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr6 19052944 19052968 -163362274 + AT_rich Low_complexity Low_complexity 1 24 0 749 177 0 8 chr6 19053760 19053884 -163361358 - FLAM_C SINE Alu -19 124 2 2061 108 3 3 chr6 19053892 19054187 -163361055 - AluSp SINE Alu -18 295 1 37 0 0 0 chr6 19054554 19054591 -163360651 + AT_rich Low_complexity Low_complexity 1 37 0 728 191 0 0 chr6 19054592 19054707 -163360535 - FLAM_A SINE Alu -17 116 2 2224 101 3 0 chr6 19054718 19055016 -163360226 - AluSx SINE Alu -13 299 1 1793 132 50 20 chr6 19055707 19056010 -163359232 + AluSx SINE Alu 1 312 0 719 166 46 34 chr6 19056124 19056299 -163358943 + MER104 DNA MER2_type 4 180 0 383 259 26 35 chr6 19058378 19058494 -163356748 - L2 LINE L2 -2 3270 3156 2097 88 7 14 chr6 19058711 19059042 -163356200 - AluSp SINE Alu 0 313 1 191 32 65 0 chr6 19059045 19059076 -163356166 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 852 206 0 7 chr6 19059077 19059223 -163356019 - FRAM SINE Alu -31 145 1 2310 91 0 0 chr6 19059760 19060058 -163355184 - AluSq SINE Alu -14 299 2 303 276 13 20 chr6 19061170 19061268 -163353974 + MIR SINE MIR 68 168 -40 207 0 0 0 chr6 19062866 19062889 -163352353 + (T)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr6 19063415 19063445 -163351797 + AT_rich Low_complexity Low_complexity 1 30 0 736 215 0 0 chr6 19063949 19064079 -163351163 + FLAM_C SINE Alu 1 130 -3 896 167 14 45 chr6 19064714 19064936 -163350306 + AluJo SINE Alu 85 299 -13 299 349 31 0 chr6 19066414 19066543 -163348699 + MER94 DNA DNA 2 134 0 265 328 46 23 chr6 19066655 19066786 -163348456 + L2 LINE L2 3174 3307 -6 2183 107 3 0 chr6 19066998 19067296 -163347946 + AluSq SINE Alu 3 301 -12 279 217 0 0 chr6 19067987 19068047 -163347195 - L1M4 LINE L1 -1483 4663 4604 237 173 210 12 chr6 19068152 19068233 -163347009 - L1M4 LINE L1 -2686 3460 3364 554 130 0 0 chr6 19068243 19068320 -163346922 - FLAM_C SINE Alu -30 113 37 21 0 0 0 chr6 19068345 19068366 -163346876 + AT_rich Low_complexity Low_complexity 1 21 0 2181 88 14 0 chr6 19068383 19068679 -163346563 - AluSp SINE Alu -10 303 4 583 271 125 7 chr6 19068822 19069103 -163346139 - L1M4 LINE L1 -3125 3021 2708 2136 97 13 30 chr6 19069888 19070188 -163345054 - AluSx SINE Alu -17 295 1 22 88 0 0 chr6 19070193 19070250 -163344992 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chr6 19070327 19070363 -163344879 + AT_rich Low_complexity Low_complexity 1 36 0 1906 140 11 4 chr6 19070365 19070671 -163344571 + AluSg SINE Alu 2 309 0 910 272 8 12 chr6 19071040 19071290 -163343952 + MIR SINE MIR 14 262 0 198 0 0 0 chr6 19071741 19071763 -163343479 + (TA)n Simple_repeat Simple_repeat 2 23 0 2688 51 3 3 chr6 19071763 19072076 -163343166 - AluSp SINE Alu 0 313 1 2436 55 7 23 chr6 19072240 19072550 -163342692 - AluY SINE Alu -6 305 1 201 232 168 32 chr6 19072887 19073012 -163342230 + MIR SINE MIR 32 173 -89 717 208 0 0 chr6 19074002 19074127 -163341115 - FLAM_C SINE Alu -16 127 3 1764 159 10 13 chr6 19074128 19074429 -163340813 - AluJo SINE Alu -8 304 5 2247 115 0 3 chr6 19074435 19074739 -163340503 - AluSc SINE Alu -6 303 1 2145 108 0 0 chr6 19074860 19075172 -163340070 + AluSg1 SINE Alu 1 312 0 535 292 62 19 chr6 19075281 19075541 -163339701 - L3 LINE CR1 -2 1575 1305 257 250 15 0 chr6 19075817 19075885 -163339357 + MER5A DNA MER1_type 50 118 -71 1658 155 23 20 chr6 19076646 19076949 -163338293 + AluJo SINE Alu 5 308 -4 21 0 0 0 chr6 19077024 19077045 -163338197 + AT_rich Low_complexity Low_complexity 1 21 0 1198 166 4 26 chr6 19078220 19078449 -163336793 + AluJo SINE Alu 86 309 -3 266 260 80 67 chr6 19078639 19078789 -163336453 + MIR SINE MIR 74 225 -37 2319 104 0 3 chr6 19078821 19079130 -163336112 + AluSx SINE Alu 1 308 -4 1910 142 7 0 chr6 19079875 19080180 -163335062 + AluJo SINE Alu 1 307 0 2449 75 0 3 chr6 19081233 19081527 -163333715 - AluSg SINE Alu -17 293 1 195 42 0 0 chr6 19082026 19082050 -163333192 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 347 49 0 0 chr6 19082050 19082091 -163333151 - LTR8 LTR ERV1 -104 587 547 1691 181 0 10 chr6 19082637 19082935 -163332307 + AluJo SINE Alu 14 308 -4 191 303 103 62 chr6 19083056 19083201 -163332041 - MIR3 SINE MIR -13 195 45 2190 110 3 7 chr6 19084124 19084425 -163330817 + AluSx SINE Alu 2 301 -11 2143 112 20 3 chr6 19084428 19084722 -163330520 + AluSg SINE Alu 3 301 -9 326 235 82 71 chr6 19084873 19085043 -163330199 - MIR3 SINE MIR -28 180 9 1949 139 7 7 chr6 19085591 19085886 -163329356 - AluSx SINE Alu -17 295 1 1856 175 3 10 chr6 19086135 19086443 -163328799 + AluJb SINE Alu 1 306 -6 23 0 0 0 chr6 19086557 19086580 -163328662 + AT_rich Low_complexity Low_complexity 1 23 0 303 267 0 40 chr6 19087267 19087368 -163327874 - MIR SINE MIR 0 262 166 2005 197 100 30 chr6 19087379 19087805 -163327437 - L1ME3A LINE L1 0 6170 5687 2232 96 0 45 chr6 19087805 19088119 -163327123 + AluSx SINE Alu 1 300 -12 2005 197 100 30 chr6 19088119 19088235 -163327007 - L1ME3A LINE L1 -483 5687 5581 999 228 75 21 chr6 19088239 19088572 -163326670 - L1ME3A LINE L1 -925 5221 4871 345 265 118 0 chr6 19088577 19088679 -163326563 - MIR SINE MIR -99 163 50 758 109 0 0 chr6 19088694 19088804 -163326438 - AluSg SINE Alu 0 309 200 71 21 0 10 chr6 19088804 19088857 -163326385 + AT_rich Low_complexity Low_complexity 1 54 -41 1477 86 16 0 chr6 19088857 19089044 -163326198 - AluSg SINE Alu -120 190 1 71 21 0 10 chr6 19089044 19089086 -163326156 + AT_rich Low_complexity Low_complexity 54 95 0 334 308 91 66 chr6 19089465 19089530 -163325712 - MIR3 SINE MIR -1 207 145 2499 73 0 0 chr6 19089530 19089833 -163325409 - AluY SINE Alu -8 303 1 334 308 91 66 chr6 19089833 19089965 -163325277 - MIR3 SINE MIR -63 145 5 1805 152 14 20 chr6 19090122 19090418 -163324824 + AluJo SINE Alu 5 298 -14 307 304 170 13 chr6 19092628 19092940 -163322302 - L3 LINE CR1 -4 1573 1213 2154 127 0 10 chr6 19092942 19093108 -163322134 - AluSg SINE Alu -13 297 134 2345 98 0 0 chr6 19093108 19093403 -163321839 - AluSg SINE Alu -15 295 1 2154 127 0 10 chr6 19093403 19093536 -163321706 - AluSg SINE Alu -176 134 1 1980 106 10 44 chr6 19093714 19094045 -163321197 + AluSx SINE Alu 1 321 0 320 295 62 8 chr6 19094110 19094239 -163321003 - L2 LINE L2 0 3313 3178 2555 40 7 0 chr6 19094798 19095094 -163320148 - AluSp SINE Alu -15 298 1 1053 174 0 87 chr6 19095254 19095418 -163319824 - AluJb SINE Alu -19 293 116 212 77 26 0 chr6 19095418 19095457 -163319785 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2182 100 0 7 chr6 19095457 19095738 -163319504 - AluSg SINE Alu -31 279 1 1053 174 0 87 chr6 19095738 19095814 -163319428 - AluJb SINE Alu -194 118 73 2438 54 0 0 chr6 19096375 19096679 -163318563 + AluY SINE Alu 1 304 0 195 42 0 0 chr6 19096799 19096823 -163318419 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr6 19097064 19097087 -163318155 + AT_rich Low_complexity Low_complexity 1 23 0 1229 105 28 22 chr6 19097165 19097346 -163317896 + AluSg/x SINE Alu 131 312 0 342 0 0 0 chr6 19097875 19097913 -163317329 + (TG)n Simple_repeat Simple_repeat 2 39 0 587 255 112 66 chr6 19098162 19098427 -163316815 - L1ME4a LINE L1 -3 6118 5867 1787 158 0 42 chr6 19098427 19098737 -163316505 - AluJo SINE Alu -15 297 1 587 255 112 66 chr6 19098737 19098953 -163316289 - L1ME4a LINE L1 -254 5867 5615 2247 101 7 0 chr6 19099102 19099388 -163315854 + AluSx SINE Alu 1 288 -24 4795 61 20 16 chr6 19099395 19100425 -163314817 + MER11A LTR ERVK 1 1266 0 2027 136 4 0 chr6 19100609 19100918 -163314324 + AluSx SINE Alu 1 310 0 331 331 46 20 chr6 19102052 19102203 -163313039 + L2 LINE L2 3117 3271 -1 905 119 0 15 chr6 19102450 19102584 -163312658 + FLAM_C SINE Alu 2 133 0 3807 115 6 9 chr6 19102970 19103499 -163311743 - MER1A DNA MER1_type 0 527 1 300 269 127 22 chr6 19103802 19103936 -163311306 - L2 LINE L2 -16 3297 3150 270 176 0 0 chr6 19104303 19104354 -163310888 + CT-rich Low_complexity Low_complexity 2 52 0 980 207 0 0 chr6 19104356 19104530 -163310712 - FAM SINE Alu -1 174 1 4937 144 17 6 chr6 19104692 19105512 -163309730 - L1PA15 LINE L1 -9 6156 5328 2134 104 0 43 chr6 19105707 19106006 -163309236 + AluSq SINE Alu 6 291 -22 402 250 188 21 chr6 19106251 19106443 -163308799 + MIR SINE MIR 28 251 -11 2565 60 3 0 chr6 19106453 19106755 -163308487 - AluY SINE Alu -8 303 1 2357 88 7 0 chr6 19106755 19107051 -163308191 - AluSg SINE Alu -11 299 1 241 313 125 0 chr6 19107118 19107246 -163307996 + MIR SINE MIR 48 191 -71 6978 103 20 10 chr6 19107341 19108338 -163306904 - LTR13 LTR ERVK 0 1007 1 2231 93 3 35 chr6 19108409 19108722 -163306520 - AluSq SINE Alu -10 303 1 1412 156 5 0 chr6 19108742 19108954 -163306288 - AluJo SINE Alu -46 266 54 876 154 0 0 chr6 19108991 19109121 -163306121 - FLAM_C SINE Alu -2 131 2 459 314 58 6 chr6 19111120 19111292 -163303950 - MIR SINE MIR -45 217 37 2071 54 0 0 chr6 19111503 19111743 -163303499 - AluY SINE Alu -11 300 61 2221 120 7 0 chr6 19111786 19112085 -163303157 + AluSx SINE Alu 1 301 -11 881 139 0 0 chr6 19113542 19113664 -163301578 - FLAM_C SINE Alu -20 123 2 324 0 0 0 chr6 19114057 19114093 -163301149 + (TG)n Simple_repeat Simple_repeat 2 37 0 2003 152 0 10 chr6 19114545 19114847 -163300395 - AluSx SINE Alu -13 299 1 2095 95 41 24 chr6 19115542 19115836 -163299406 - AluSq SINE Alu -14 299 1 185 254 14 0 chr6 19115899 19115970 -163299272 + CT-rich Low_complexity Low_complexity 2 73 0 2027 162 0 0 chr6 19115970 19116272 -163298970 - AluSx SINE Alu -10 302 1 978 127 0 0 chr6 19116272 19116406 -163298836 - AluJo SINE Alu -177 135 2 2074 125 17 3 chr6 19116418 19116713 -163298529 - AluSx SINE Alu -13 299 1 2447 75 0 7 chr6 19116982 19117290 -163297952 + AluY SINE Alu 1 306 -5 987 239 76 38 chr6 19118687 19119084 -163296158 + L1MC5 LINE L1 7084 7495 -466 781 209 50 34 chr6 19119117 19119414 -163295828 + L1MC5 LINE L1 7478 7779 -182 1033 124 7 0 chr6 19119422 19119598 -163295644 + AluSg/x SINE Alu 136 312 0 1815 157 3 13 chr6 19119602 19119901 -163295341 - AluJb SINE Alu -16 296 1 401 206 22 73 chr6 19119904 19120020 -163295222 + L1MC5 LINE L1 7779 7889 -72 1763 170 0 29 chr6 19120020 19120326 -163294916 - AluJo SINE Alu -15 297 1 401 206 22 73 chr6 19120326 19120345 -163294897 + L1MC5 LINE L1 7889 7907 -54 339 240 48 75 chr6 19121160 19121306 -163293936 + MIR SINE MIR 79 220 -42 2004 111 7 4 chr6 19121457 19121736 -163293506 - AluSx SINE Alu -17 295 16 832 233 85 5 chr6 19121737 19121960 -163293282 - Charlie1 DNA MER1_type -2519 242 2 889 249 38 21 chr6 19122658 19122895 -163292347 + Charlie1 DNA MER1_type 2 242 -2519 621 209 29 14 chr6 19122876 19123015 -163292227 + Charlie1 DNA MER1_type 2620 2760 -1 * 263 312 70 96 chr6 19123865 19124179 -163291063 - L2 LINE L2 -10 3262 2957 204 40 0 0 chr6 19124322 19124347 -163290895 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 590 246 35 53 chr6 19124351 19124579 -163290663 - L2 LINE L2 -17 3296 3073 1803 122 0 4 chr6 19124897 19125144 -163290098 + AluSx SINE Alu 39 284 -28 252 77 0 0 chr6 19125147 19125186 -163290056 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2212 108 3 13 chr6 19125234 19125548 -163289694 + AluSx SINE Alu 1 311 -1 1773 163 3 13 chr6 19125717 19126024 -163289218 + AluJb SINE Alu 1 304 -8 2346 100 0 0 chr6 19126078 19126378 -163288864 + AluSx SINE Alu 1 300 -12 1764 127 48 60 chr6 19127416 19127730 -163287512 + AluSg SINE Alu 1 310 0 311 203 14 0 chr6 19128032 19128101 -163287141 - MIR SINE MIR 0 262 193 203 297 68 0 chr6 19128293 19128367 -163286875 + MIR SINE MIR 182 260 -2 769 95 0 9 chr6 19129051 19129156 -163286086 - MSTA LTR MaLR 0 428 325 * 843 96 178 0 chr6 19129155 19129290 -163285952 - MSTA LTR MaLR -269 159 1 2106 109 7 17 chr6 19130184 19130486 -163284756 + AluSx SINE Alu 11 309 -3 2282 77 3 27 chr6 19130539 19130839 -163284403 + AluSc SINE Alu 1 293 -16 23 0 0 0 chr6 19131138 19131161 -163284081 + AT_rich Low_complexity Low_complexity 1 23 0 1238 194 10 68 chr6 19131161 19131315 -163283927 + L1PB4 LINE L1 5873 6004 -152 2197 117 0 16 chr6 19131315 19131624 -163283618 - AluSx SINE Alu -8 304 1 1238 194 10 68 chr6 19131624 19131763 -163283479 + L1PB4 LINE L1 6004 6149 -7 1302 152 11 42 chr6 19131803 19132066 -163283176 + L1MB8 LINE L1 5648 5902 -282 2164 164 40 5 chr6 19132093 19132496 -163282746 + MLT1C LTR MaLR 51 467 0 1297 156 76 15 chr6 19132497 19132760 -163282482 + L1MB8 LINE L1 5900 6178 0 1077 208 196 43 chr6 19133310 19133578 -163281664 + MER34C LTR ERV1 81 307 -278 1784 161 55 0 chr6 19133578 19133869 -163281373 - AluJb SINE Alu -5 307 1 1077 208 196 43 chr6 19133869 19134038 -163281204 + MER34C LTR ERV1 307 585 0 306 0 0 0 chr6 19134448 19134505 -163280737 + (TG)n Simple_repeat Simple_repeat 1 91 0 306 0 0 0 chr6 19134505 19134539 -163280703 + (TG)n Simple_repeat Simple_repeat 2 35 0 1994 142 0 7 chr6 19134559 19134855 -163280387 - AluJo SINE Alu -18 294 1 326 272 11 29 chr6 19135844 19135979 -163279263 + MLT1J LTR MaLR 99 294 -310 2348 103 3 0 chr6 19136268 19136579 -163278663 + AluSx SINE Alu 1 312 0 383 269 131 7 chr6 19136941 19137086 -163278156 + MER103 DNA DNA 1 163 -3 2284 112 56 36 chr6 19137467 19137824 -163277418 - THE1B LTR MaLR 0 364 1 216 0 0 0 chr6 19138546 19138570 -163276672 + (T)n Simple_repeat Simple_repeat 1 24 0 1318 141 0 0 chr6 19138576 19138760 -163276482 - AluSq SINE Alu -129 184 1 221 172 17 52 chr6 19138795 19138853 -163276389 + MIR SINE MIR 99 154 -108 865 170 0 15 chr6 19138990 19139125 -163276117 + FLAM_C SINE Alu 1 133 0 475 259 136 34 chr6 19139370 19139606 -163275636 + MIR SINE MIR 3 262 0 358 236 94 0 chr6 19140215 19140321 -163274921 - MIR SINE MIR -1 261 146 2277 90 3 3 chr6 19140326 19140616 -163274626 - AluSq SINE Alu -23 290 1 2784 95 31 0 chr6 19140619 19141008 -163274234 - L1MA5 LINE L1 0 6300 5900 1358 140 5 0 chr6 19141063 19141263 -163273979 - AluSg/x SINE Alu -5 307 107 759 184 0 0 chr6 19141293 19141407 -163273835 - AluJb SINE Alu -193 119 6 1867 140 61 0 chr6 19141429 19141707 -163273535 - AluSx SINE Alu -17 295 1 797 199 0 0 chr6 19142494 19142630 -163272612 - FLAM_C SINE Alu -6 137 2 250 237 114 9 chr6 19143338 19143452 -163271790 + L2 LINE L2 3183 3308 -5 * 350 238 61 110 chr6 19143401 19143565 -163271677 - MIR SINE MIR -11 197 35 1741 182 7 3 chr6 19144932 19145223 -163270019 - AluJb SINE Alu -20 292 1 258 279 61 54 chr6 19145637 19145784 -163269458 - MIR SINE MIR -36 226 79 765 273 82 24 chr6 19145834 19146271 -163268971 + L1ME4a LINE L1 5479 5950 -220 225 0 0 0 chr6 19146400 19146425 -163268817 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 348 174 80 123 chr6 19146626 19146659 -163268583 + L1ME4a LINE L1 5982 6015 -106 2038 134 3 0 chr6 19146659 19146942 -163268300 - AluSx SINE Alu -28 284 1 348 174 80 123 chr6 19146942 19147046 -163268196 + L1ME4a LINE L1 6015 6113 -8 2192 128 10 0 chr6 19147051 19147357 -163267885 - AluSx SINE Alu -3 309 1 372 282 53 23 chr6 19147425 19147556 -163267686 + MER5B DNA MER1_type 31 165 -13 1632 164 11 0 chr6 19148252 19148515 -163266727 - AluJo SINE Alu -46 266 1 234 325 58 33 chr6 19148965 19149085 -163266157 + L2 LINE L2 3139 3261 -11 250 324 216 0 chr6 19149443 19149554 -163265688 + L2 LINE L2 3138 3272 0 404 276 91 67 chr6 19149733 19149752 -163265490 + L1ME4a LINE L1 5433 5450 -671 1871 132 80 47 chr6 19149752 19150115 -163265127 + THE1C LTR MaLR 1 375 0 404 276 91 67 chr6 19150115 19150586 -163264656 + L1ME4a LINE L1 5450 5937 -184 393 117 0 0 chr6 19150586 19150646 -163264596 + (TG)n Simple_repeat Simple_repeat 1 60 0 404 276 91 67 chr6 19150646 19150705 -163264537 + L1ME4a LINE L1 5937 5993 -128 845 165 0 0 chr6 19151825 19151958 -163263284 + FLAM_C SINE Alu 1 133 -10 23 0 0 0 chr6 19152120 19152143 -163263099 + AT_rich Low_complexity Low_complexity 1 23 0 2083 92 4 4 chr6 19152143 19152416 -163262826 - AluSg SINE Alu -14 296 24 346 323 81 0 chr6 19152425 19152549 -163262693 - MIR SINE MIR -71 191 58 2196 117 7 0 chr6 19152692 19152991 -163262251 - AluSx SINE Alu -11 301 1 444 75 0 0 chr6 19153192 19153245 -163261997 + Alu SINE Alu 243 295 -15 364 266 56 28 chr6 19153831 19153974 -163261268 - L1ME4a LINE L1 -256 5865 5719 365 345 83 31 chr6 19154158 19154509 -163260733 - L1ME4a LINE L1 -748 5398 5030 826 220 6 0 chr6 19154509 19154677 -163260565 - FRAM SINE Alu 0 176 8 431 310 136 0 chr6 19154695 19154879 -163260363 + MIR SINE MIR 53 261 -1 1323 165 88 25 chr6 19155025 19155171 -163260071 + AluJo SINE Alu 1 136 -176 2242 95 0 0 chr6 19155171 19155489 -163259753 + AluY SINE Alu 1 318 0 1323 165 88 25 chr6 19155489 19155626 -163259616 + AluJo SINE Alu 136 303 -9 223 27 27 27 chr6 19156291 19156328 -163258914 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1516 170 3 42 chr6 19156996 19157279 -163257963 - AluJo SINE Alu -18 294 23 421 288 8 0 chr6 19159024 19159142 -163256100 + MIR SINE MIR 108 226 -36 483 87 0 0 chr6 19159333 19159402 -163255840 + (TA)n Simple_repeat Simple_repeat 1 69 0 602 242 258 5 chr6 19159974 19160172 -163255070 - MIR SINE MIR -3 259 12 2247 80 50 7 chr6 19161225 19161524 -163253718 + AluSx SINE Alu 1 312 0 411 217 96 17 chr6 19161670 19161785 -163253457 - MIR3 SINE MIR -23 185 62 777 248 27 31 chr6 19161893 19162115 -163253127 - MIR SINE MIR -29 233 13 419 284 86 46 chr6 19163394 19163587 -163251655 - MIR SINE MIR -59 203 8 693 171 0 0 chr6 19163646 19163763 -163251479 - L1MA8 LINE L1 -12 6279 6163 1526 152 4 0 chr6 19164902 19165146 -163250096 + L1MA8 LINE L1 6044 6288 -3 1993 132 28 0 chr6 19165149 19165438 -163249804 - AluSx SINE Alu -13 299 3 190 359 97 19 chr6 19165649 19165752 -163249490 - MIR SINE MIR -127 135 25 1389 181 57 37 chr6 19166097 19166396 -163248846 - AluJo SINE Alu -7 305 1 225 0 0 0 chr6 19166768 19166793 -163248449 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 1160 97 0 34 chr6 19166935 19167111 -163248131 - AluSg/x SINE Alu -12 298 129 4584 122 17 3 chr6 19167122 19167482 -163247760 - L1PB1 LINE L1 0 6151 5777 369 62 0 0 chr6 19167482 19167530 -163247712 + (CA)n Simple_repeat Simple_repeat 1 48 0 4584 122 17 3 chr6 19167530 19167819 -163247423 - L1PB1 LINE L1 -374 5777 5493 2391 113 0 0 chr6 19167948 19168259 -163246983 - AluSx SINE Alu -1 311 1 230 179 22 187 chr6 19168415 19168549 -163246693 - MER103 DNA DNA -42 124 13 306 0 0 0 chr6 19169128 19169162 -163246080 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 1900 144 18 0 chr6 19169162 19169439 -163245803 - AluJb SINE Alu -30 282 1 487 302 62 26 chr6 19169926 19170118 -163245124 - L3b LINE CR1 -31 1552 1354 210 118 0 0 chr6 19170152 19170186 -163245056 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 347 202 223 0 chr6 19170440 19170534 -163244708 - L2 LINE L2 0 3313 3199 350 247 31 0 chr6 19170711 19170808 -163244434 - L2 LINE L2 -315 2998 2899 838 156 14 14 chr6 19170941 19171082 -163244160 - FLAM_C SINE Alu 0 143 3 285 309 118 37 chr6 19171722 19171858 -163243384 + L2 LINE L2 3125 3271 -1 210 291 0 76 chr6 19171999 19172078 -163243164 + L3 LINE CR1 1501 1573 -4 1715 141 46 33 chr6 19172454 19172760 -163242482 - AluJo SINE Alu -2 310 1 2353 98 0 3 chr6 19172849 19173155 -163242087 + AluSx SINE Alu 1 305 -7 1183 173 122 43 chr6 19173155 19173410 -163241832 - AluJo SINE Alu -37 275 1 1728 114 4 12 chr6 19173962 19174208 -163241034 + AluSc SINE Alu 44 287 -22 2135 130 3 0 chr6 19174219 19174518 -163240724 + AluSx SINE Alu 1 300 -12 2047 136 7 0 chr6 19175071 19175366 -163239876 - AluSx SINE Alu -15 297 1 207 189 0 0 chr6 19175434 19175471 -163239771 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 1704 176 51 0 chr6 19175583 19175879 -163239363 + AluJo SINE Alu 2 312 0 1064 198 0 0 chr6 19176275 19176442 -163238800 + FAM SINE Alu 1 167 -8 223 279 0 0 chr6 19176883 19176926 -163238316 - MIR SINE MIR -20 242 200 751 135 0 0 chr6 19179219 19179323 -163235919 + AluSp/q SINE Alu 196 299 -14 1009 282 50 12 chr6 19179509 19179873 -163235369 + MLT1I LTR MaLR 50 395 -14 2229 92 0 39 chr6 19180205 19180510 -163234732 - AluSq SINE Alu -20 293 1 471 201 165 10 chr6 19180966 19181046 -163234196 - MER33 DNA MER1_type -2261 363 297 2135 138 0 3 chr6 19181046 19181350 -163233892 + AluSx SINE Alu 1 303 -9 471 201 165 10 chr6 19181350 19181554 -163233688 - MER33 DNA MER1_type -2327 297 1 400 187 13 0 chr6 19182158 19182233 -163233009 + MER2 DNA MER2_type 1 76 -269 680 121 91 0 chr6 19182377 19182476 -163232766 + AluSp SINE Alu 2 109 -204 1529 108 5 0 chr6 19182507 19182711 -163232531 + AluSp SINE Alu 97 301 -12 1683 166 7 32 chr6 19183129 19183295 -163231947 - AluJo SINE Alu -12 300 144 252 0 0 0 chr6 19183295 19183323 -163231919 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1683 166 7 32 chr6 19183323 19183464 -163231778 - AluJo SINE Alu -168 144 1 1481 135 31 58 chr6 19184020 19184280 -163230962 + AluJo SINE Alu 41 293 -19 2829 222 76 7 chr6 19185002 19185688 -163229554 + MER21B LTR ERV1 79 811 -52 1203 245 109 60 chr6 19185825 19186337 -163228905 - L1M4 LINE L1 -1681 4465 3979 2379 97 0 0 chr6 19186337 19186637 -163228605 - AluSg SINE Alu -5 305 6 1565 155 79 7 chr6 19186645 19186922 -163228320 - AluJo SINE Alu -15 297 1 1203 245 109 60 chr6 19186922 19186997 -163228245 - L1M4 LINE L1 -2173 3973 3840 1537 157 53 53 chr6 19187006 19187343 -163227899 - L1MC2 LINE L1 -17 6327 5991 385 291 92 72 chr6 19187530 19188029 -163227213 - L1MEd LINE L1 -5130 989 481 307 315 45 0 chr6 19188304 19188415 -163226827 - L1MEd LINE L1 -5954 165 50 1518 191 0 8 chr6 19188499 19188740 -163226502 + MER8 DNA MER2_type 1 239 0 385 283 83 0 chr6 19190324 19190444 -163224798 + MIR SINE MIR 57 186 -76 41 48 0 0 chr6 19191035 19191097 -163224145 + AT_rich Low_complexity Low_complexity 1 62 0 1649 190 30 3 chr6 19191337 19191632 -163223610 - AluJo SINE Alu -9 303 1 221 284 0 0 chr6 19193161 19193249 -163221993 + (TTCA)n Simple_repeat Simple_repeat 1 88 0 2536 62 0 13 chr6 19193301 19193609 -163221633 + AluY SINE Alu 1 304 -7 1734 155 11 33 chr6 19193931 19194264 -163220978 + MER93a LTR ERV1 29 402 0 1101 141 0 18 chr6 19194344 19194514 -163220728 + AluSg/x SINE Alu 129 295 -17 476 239 18 61 chr6 19195667 19195830 -163219412 + MER103 DNA DNA 11 166 0 1682 179 0 52 chr6 19196363 19196688 -163218554 + AluJb SINE Alu 2 309 -3 2366 110 0 0 chr6 19196690 19197000 -163218242 + AluSx SINE Alu 1 310 -2 1732 111 0 21 chr6 19197519 19197754 -163217488 - MER30 DNA MER1_type 0 230 1 234 277 96 48 chr6 19197772 19197938 -163217304 - L2 LINE L2 -10 3303 3130 203 355 22 36 chr6 19198126 19198264 -163216978 - L2 LINE L2 -211 3061 2926 223 200 15 15 chr6 19198869 19198934 -163216308 + CT-rich Low_complexity Low_complexity 4 68 0 1832 181 3 13 chr6 19198942 19199257 -163215985 - AluJo SINE Alu 0 312 1 599 300 36 47 chr6 19199580 19199833 -163215409 - MIR SINE MIR -2 260 11 1760 172 7 14 chr6 19200822 19201118 -163214124 + AluJo SINE Alu 1 294 -18 427 260 155 27 chr6 19201378 19201597 -163213645 + MIR SINE MIR 8 254 -8 2402 91 3 0 chr6 19201758 19202065 -163213177 + AluSx SINE Alu 1 308 -4 1995 120 39 0 chr6 19202117 19202400 -163212842 + AluSx SINE Alu 1 294 -18 2422 80 0 3 chr6 19203256 19203567 -163211675 - AluY SINE Alu -1 310 1 2775 87 19 46 chr6 19204059 19204273 -163210969 + L1MA2 LINE L1 5900 6099 -205 1907 133 7 3 chr6 19204273 19204559 -163210683 - AluSx SINE Alu -16 296 10 2775 87 19 46 chr6 19204559 19204760 -163210482 + L1MA2 LINE L1 6099 6304 0 843 146 15 15 chr6 19205452 19205589 -163209653 - AluJo SINE Alu -175 137 1 180 125 0 0 chr6 19205591 19205623 -163209619 + (TA)n Simple_repeat Simple_repeat 2 33 0 370 169 78 0 chr6 19206552 19206629 -163208613 + MER5C DNA MER1_type 240 322 -2 25 31 0 0 chr6 19206879 19206911 -163208331 + AT_rich Low_complexity Low_complexity 1 32 0 531 224 194 18 chr6 19207744 19207914 -163207328 + MIR SINE MIR 20 219 -43 1490 158 97 0 chr6 19208184 19208483 -163206759 + AluJb SINE Alu 1 324 0 217 238 129 61 chr6 19209700 19209737 -163205505 - MIR SINE MIR -6 256 223 2277 117 0 0 chr6 19209737 19210045 -163205197 - AluSx SINE Alu -4 308 1 217 238 129 61 chr6 19210045 19210154 -163205088 - MIR SINE MIR -39 223 100 181 326 81 58 chr6 19210223 19210395 -163204847 + L2 LINE L2 2682 2857 -457 217 304 71 0 chr6 19210742 19210798 -163204444 + L2 LINE L2 3213 3272 0 521 279 99 68 chr6 19211169 19211552 -163203690 + L2 LINE L2 2918 3312 -1 201 108 0 0 chr6 19211731 19211768 -163203474 + (CACAT)n Simple_repeat Simple_repeat 3 39 0 2268 103 0 0 chr6 19213096 19213396 -163201846 + AluSx SINE Alu 1 300 -12 383 282 8 8 chr6 19213652 19213783 -163201459 - MER103 DNA DNA -1 165 35 532 251 21 16 chr6 19214882 19215073 -163200169 + L1ME3A LINE L1 5760 5951 -219 953 110 0 0 chr6 19215310 19215428 -163199814 - FLAM_C SINE Alu -15 118 1 1860 154 0 16 chr6 19215494 19215834 -163199408 + AluJb SINE Alu 1 312 0 23 0 0 0 chr6 19215853 19215876 -163199366 + AT_rich Low_complexity Low_complexity 1 23 0 189 305 34 0 chr6 19216461 19216520 -163198722 + L2 LINE L2 3238 3298 -15 30 27 0 0 chr6 19216586 19216623 -163198619 + AT_rich Low_complexity Low_complexity 1 37 0 314 200 29 14 chr6 19217620 19217690 -163197552 - L2 LINE L2 -332 2981 2911 * 943 270 27 0 chr6 19217687 19217946 -163197296 - L2 LINE L2 -740 2574 2309 2162 118 3 3 chr6 19218739 19219036 -163196206 - AluSx SINE Alu -15 297 1 3148 120 30 84 chr6 19219311 19219360 -163195882 + L1MB3 LINE L1 5621 5671 -512 1947 152 3 7 chr6 19219360 19219657 -163195585 + AluSx SINE Alu 1 296 -16 3148 120 30 84 chr6 19219657 19220199 -163195043 + L1MB3 LINE L1 5671 6180 -3 297 312 8 56 chr6 19220465 19220590 -163194652 - Tigger8 DNA MER2_type -547 119 1 219 36 0 0 chr6 19221564 19221592 -163193650 + (A)n Simple_repeat Simple_repeat 1 28 0 1413 182 10 55 chr6 19221761 19221909 -163193333 - AluJo SINE Alu -34 278 148 2559 48 0 0 chr6 19221909 19222204 -163193038 - AluY SINE Alu -16 295 1 1413 182 10 55 chr6 19222204 19222346 -163192896 - AluJo SINE Alu -164 148 1 775 199 0 29 chr6 19224052 19224188 -163191054 - FLAM_A SINE Alu 0 133 2 342 200 43 70 chr6 19224331 19224446 -163190796 - L1ME4a LINE L1 -49 6072 5961 1227 176 5 0 chr6 19224459 19224647 -163190595 + MER5A DNA MER1_type 1 189 0 227 244 39 26 chr6 19225574 19225652 -163189590 + MIR3 SINE MIR 81 159 -49 1393 124 42 28 chr6 19225820 19226037 -163189205 - AluJo SINE Alu -81 231 12 1833 148 7 7 chr6 19227009 19227306 -163187936 + AluJb SINE Alu 1 297 -15 272 181 64 106 chr6 19227976 19228070 -163187172 + MER5B DNA MER1_type 89 178 0 1697 137 79 14 chr6 19228654 19228932 -163186310 - AluSg SINE Alu -14 296 1 198 150 0 0 chr6 19228955 19228995 -163186247 + (TC)n Simple_repeat Simple_repeat 1 40 0 391 238 79 0 chr6 19229085 19229186 -163186056 - MIR SINE MIR -27 235 127 1614 173 7 7 chr6 19229404 19229681 -163185561 + AluJb SINE Alu 5 281 -31 1033 109 0 124 chr6 19230199 19230244 -163184998 - AluJo SINE Alu -143 169 120 2229 120 7 0 chr6 19230244 19230552 -163184690 - AluSx SINE Alu -2 310 1 1033 109 0 124 chr6 19230552 19230699 -163184543 - AluJo SINE Alu -192 120 1 22 0 0 0 chr6 19231322 19231344 -163183898 + AT_rich Low_complexity Low_complexity 1 22 0 2162 121 6 47 chr6 19231977 19232275 -163182967 + MER41B LTR ERV1 1 283 -352 2284 54 40 14 chr6 19232275 19232571 -163182671 + AluY SINE Alu 1 304 -7 2162 121 6 47 chr6 19232571 19232636 -163182606 + MER41B LTR ERV1 283 349 -286 270 81 0 0 chr6 19232639 19232676 -163182566 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 224 119 0 24 chr6 19232669 19232711 -163182531 + (TCC)n Simple_repeat Simple_repeat 2 42 0 * 412 241 0 0 chr6 19232798 19232885 -163182357 - MER5A DNA MER1_type -77 112 26 2487 84 6 0 chr6 19233318 19233629 -163181613 - AluSp SINE Alu 0 313 1 2174 144 15 50 chr6 19233885 19234289 -163180953 + MLT1B LTR MaLR 1 390 0 1802 168 10 7 chr6 19234525 19234817 -163180425 + AluJb SINE Alu 2 294 -18 216 0 0 0 chr6 19234840 19234864 -163180378 + (TA)n Simple_repeat Simple_repeat 2 25 0 387 226 286 8 chr6 19234904 19235037 -163180205 + MIR SINE MIR 32 201 -61 2298 109 0 3 chr6 19235200 19235513 -163179729 + AluSx SINE Alu 1 312 0 196 295 13 51 chr6 19235831 19235909 -163179333 + MER5A DNA MER1_type 1 75 -114 1156 60 0 0 chr6 19235919 19236052 -163179190 - AluSq/x SINE Alu -180 133 1 566 220 0 9 chr6 19236053 19236162 -163179080 - MER5A DNA MER1_type -80 109 2 25 31 0 0 chr6 19237206 19237238 -163178004 + AT_rich Low_complexity Low_complexity 1 32 0 355 307 104 0 chr6 19237288 19237451 -163177791 + L1MB8 LINE L1 4156 4335 -1811 832 189 8 15 chr6 19237496 19237628 -163177614 + FLAM_C SINE Alu 2 132 -11 1210 222 115 8 chr6 19237656 19238012 -163177230 + L1ME3A LINE L1 5776 6169 -1 406 270 110 42 chr6 19237995 19238232 -163177010 + L1MB8 LINE L1 4365 4617 -1529 * 392 323 106 12 chr6 19238293 19238624 -163176618 + L1MB8 LINE L1 4751 5112 -1034 787 144 0 9 chr6 19238642 19238753 -163176489 - FLAM_C SINE Alu -25 118 9 1031 242 137 36 chr6 19238831 19239421 -163175821 + L1MB8 LINE L1 5175 6106 -72 482 190 0 50 chr6 19239421 19239542 -163175700 + L1MB8 LINE L1 6063 6177 -1 1031 242 137 36 chr6 19239542 19239623 -163175619 + L1MB8 LINE L1 6106 6177 -1 346 230 14 81 chr6 19240032 19240051 -163175191 + L1MC4 LINE L1 7820 7839 -203 2191 97 3 39 chr6 19240051 19240360 -163174882 + AluSq SINE Alu 1 298 -15 346 230 14 81 chr6 19240360 19240488 -163174754 + L1MC4 LINE L1 7839 7957 -85 2109 117 10 16 chr6 19241062 19241370 -163173872 - AluSx SINE Alu -6 306 1 1585 139 99 15 chr6 19243662 19243935 -163171307 - AluJb SINE Alu -16 296 1 1984 171 63 22 chr6 19243956 19244371 -163170871 - L1MB8 LINE L1 -6 6172 5741 2409 82 0 3 chr6 19244527 19244830 -163170412 + AluY SINE Alu 2 303 -8 1641 167 10 27 chr6 19244855 19245154 -163170088 + AluJo SINE Alu 1 294 -18 2408 70 7 0 chr6 19245154 19245451 -163169791 + AluY SINE Alu 1 300 -11 253 218 18 0 chr6 19245453 19245508 -163169734 + GA-rich Low_complexity Low_complexity 1 56 0 601 259 75 26 chr6 19245539 19245792 -163169450 + L1MC4a LINE L1 5691 5954 -167 2330 82 0 16 chr6 19246522 19246828 -163168414 + AluY SINE Alu 1 301 -10 21 0 0 0 chr6 19247010 19247031 -163168211 + AT_rich Low_complexity Low_complexity 1 21 0 1635 174 16 35 chr6 19247167 19247483 -163167759 - AluJo SINE Alu -2 310 1 748 145 0 87 chr6 19247496 19247634 -163167608 - FLAM_C SINE Alu -7 126 1 243 336 82 0 chr6 19247681 19247791 -163167451 - MIR3 SINE MIR -41 167 49 866 240 64 0 chr6 19248591 19248795 -163166447 - MIR SINE MIR -33 229 13 4481 153 59 106 chr6 19249057 19249394 -163165848 + MER21A LTR ERV1 1 352 -579 2150 116 3 3 chr6 19249394 19249686 -163165556 - AluSx SINE Alu -20 292 1 4481 153 59 106 chr6 19249686 19250325 -163164917 + MER21A LTR ERV1 352 931 0 1174 131 17 63 chr6 19251375 19251612 -163163630 - AluJo SINE Alu -1 311 86 2355 87 6 0 chr6 19252246 19252557 -163162685 + AluSp SINE Alu 1 313 0 2008 125 56 0 chr6 19254549 19254836 -163160406 + AluSx SINE Alu 1 303 -9 2330 102 0 0 chr6 19255640 19255945 -163159297 + AluSq SINE Alu 1 305 -8 2099 110 7 3 chr6 19256069 19256359 -163158883 - AluSg SINE Alu -19 291 1 452 250 0 9 chr6 19256362 19256474 -163158768 + L1ME2 LINE L1 6042 6152 -12 842 216 0 7 chr6 19256474 19256622 -163158620 + FRAM SINE Alu 1 146 -30 2012 113 10 26 chr6 19257323 19257633 -163157609 - AluSx SINE Alu -7 305 1 2026 120 0 58 chr6 19258398 19258706 -163156536 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr6 19258787 19258810 -163156432 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr6 19258948 19258968 -163156274 + (T)n Simple_repeat Simple_repeat 1 20 0 436 213 94 39 chr6 19259357 19259484 -163155758 - MIR SINE MIR -111 151 18 23 0 0 0 chr6 19260432 19260455 -163154787 + AT_rich Low_complexity Low_complexity 1 23 0 243 262 33 115 chr6 19261593 19261715 -163153527 - L2 LINE L2 -28 3285 3174 21 0 0 0 chr6 19261902 19261923 -163153319 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 19262356 19262392 -163152850 + AT_rich Low_complexity Low_complexity 1 36 0 2553 50 0 0 chr6 19262427 19262726 -163152516 - AluY SINE Alu -12 299 1 1005 117 0 7 chr6 19262824 19262961 -163152281 + AluSq/x SINE Alu 1 136 -177 27 0 0 0 chr6 19263888 19263915 -163151327 + AT_rich Low_complexity Low_complexity 1 27 0 1961 160 0 10 chr6 19263922 19264229 -163151013 - AluJb SINE Alu -8 304 1 189 0 0 0 chr6 19265338 19265359 -163149883 + (A)n Simple_repeat Simple_repeat 1 21 0 370 307 46 20 chr6 19266137 19266290 -163148952 - MIR3 SINE MIR -37 171 15 2389 81 7 0 chr6 19266584 19266881 -163148361 - AluSg SINE Alu -10 300 2 215 129 0 0 chr6 19266910 19266941 -163148301 + MER5B DNA MER1_type 5 35 -143 706 230 78 11 chr6 19266944 19267151 -163148091 + MLT1G LTR MaLR 303 590 0 677 190 21 35 chr6 19267151 19267293 -163147949 + MER5B DNA MER1_type 36 175 -3 827 204 120 0 chr6 19267318 19267485 -163147757 - MER3 DNA MER1_type -22 187 1 428 123 14 14 chr6 19267493 19267566 -163147676 + MER5A DNA MER1_type 4 76 -113 1447 152 4 41 chr6 19267566 19267810 -163147432 + AluSq SINE Alu 1 235 -78 5431 142 37 63 chr6 19267811 19269254 -163145988 - pTR5 LTR ERV1 -143 2295 276 449 129 0 0 chr6 19269254 19269324 -163145918 + AluS SINE Alu 228 297 -12 2487 64 6 16 chr6 19269326 19269640 -163145602 + AluY SINE Alu 1 311 0 502 165 233 0 chr6 19269640 19269743 -163145499 + MER5A DNA MER1_type 61 187 -2 1181 33 0 33 chr6 19270203 19270354 -163144888 - L1PA5 LINE L1 -1 6153 6008 1904 147 0 27 chr6 19271507 19271806 -163143436 + AluSx SINE Alu 1 291 -21 246 336 43 43 chr6 19271998 19272114 -163143128 - L2 LINE L2 -19 3253 3138 3399 219 160 37 chr6 19272116 19273525 -163141717 + HAL1 LINE L1 856 2411 -96 439 303 70 4 chr6 19273641 19273869 -163141373 - MER112 DNA MER1_type 0 260 18 2114 94 7 3 chr6 19273918 19274217 -163141025 - AluSc SINE Alu 0 309 10 618 162 0 19 chr6 19274497 19274602 -163140640 - MER46A DNA MER2_type 0 236 134 2122 113 0 7 chr6 19274602 19274902 -163140340 - AluSq SINE Alu -15 298 1 226 175 25 0 chr6 19274909 19274949 -163140293 - MER46A DNA MER2_type -187 49 9 2384 62 0 13 chr6 19275393 19275698 -163139544 + AluSg SINE Alu 1 301 -9 1735 174 17 0 chr6 19275999 19276292 -163138950 - AluSx SINE Alu -14 298 1 296 276 87 24 chr6 19276526 19276653 -163138589 - L2 LINE L2 -17 3255 3121 282 283 11 0 chr6 19279199 19279291 -163135951 + MIR3 SINE MIR 93 185 -23 221 146 0 55 chr6 19279794 19279849 -163135393 + (CCCCCG)n Simple_repeat Simple_repeat 6 57 0 216 155 35 17 chr6 19280029 19280087 -163135155 + (CCG)n Simple_repeat Simple_repeat 1 59 0 36 62 0 0 chr6 19280124 19280188 -163135054 + GC_rich Low_complexity Low_complexity 1 64 0 225 0 0 0 chr6 19280188 19280213 -163135029 + (CGG)n Simple_repeat Simple_repeat 3 27 0 27 49 0 0 chr6 19280280 19280321 -163134921 + GC_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr6 19280500 19280526 -163134716 + GC_rich Low_complexity Low_complexity 1 26 0 190 282 127 0 chr6 19280930 19281001 -163134241 - L2 LINE L2 -9 3304 3225 1051 167 56 60 chr6 19281236 19281333 -163133909 - MER8 DNA MER2_type -3 236 140 1894 146 0 16 chr6 19281333 19281642 -163133600 + AluJb SINE Alu 6 309 -3 1051 167 56 60 chr6 19281642 19281778 -163133464 - MER8 DNA MER2_type -99 140 4 331 226 15 90 chr6 19281890 19282023 -163133219 - L2 LINE L2 0 3313 3191 2284 82 3 0 chr6 19282188 19282494 -163132748 + AluSp SINE Alu 1 307 -6 1963 176 71 47 chr6 19282618 19282772 -163132470 + MLT1C LTR MaLR 7 156 -311 2191 109 3 0 chr6 19282772 19283074 -163132168 - AluSx SINE Alu -9 303 1 1963 176 71 47 chr6 19283074 19283369 -163131873 + MLT1C LTR MaLR 156 467 0 1874 128 14 10 chr6 19283371 19283667 -163131575 + AluJo SINE Alu 1 297 -15 239 111 0 22 chr6 19283670 19283715 -163131527 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 1779 158 0 11 chr6 19284332 19284644 -163130598 + AluSx SINE Alu 3 311 0 330 312 40 83 chr6 19284740 19284957 -163130285 - L3 LINE CR1 -76 1501 1299 2235 103 0 6 chr6 19284957 19285268 -163129974 - AluSx SINE Alu -3 309 1 330 312 40 83 chr6 19285268 19285351 -163129891 - L3 LINE CR1 -278 1299 1214 293 164 98 0 chr6 19285361 19285422 -163129820 - MLT1G1 LTR MaLR 0 595 529 283 133 44 0 chr6 19285422 19285467 -163129775 + FRAM/FAM SINE Alu 9 55 -111 995 298 32 49 chr6 19286059 19286319 -163128923 - MLT1I LTR MaLR -3 406 152 2025 121 10 3 chr6 19286319 19286626 -163128616 + AluSg SINE Alu 1 309 -1 995 298 32 49 chr6 19286626 19286734 -163128508 - MLT1I LTR MaLR -257 152 44 594 280 110 30 chr6 19286778 19286978 -163128264 - MIR SINE MIR 0 262 47 2151 123 0 0 chr6 19287269 19287570 -163127672 + AluSx SINE Alu 1 301 -11 585 254 76 87 chr6 19287594 19287667 -163127575 + MIR SINE MIR 2 74 -188 1643 168 28 3 chr6 19287667 19287953 -163127289 - AluJb SINE Alu -19 293 1 585 254 76 87 chr6 19287953 19288143 -163127099 + MIR SINE MIR 74 262 0 2098 107 0 0 chr6 19288182 19288471 -163126771 - AluSx SINE Alu -3 309 21 370 307 120 29 chr6 19289305 19289579 -163125663 - L2 LINE L2 0 3272 2974 2059 114 3 3 chr6 19290044 19290342 -163124900 + AluSx SINE Alu 1 298 -14 25 51 0 0 chr6 19291502 19291541 -163123701 + AT_rich Low_complexity Low_complexity 1 39 0 2727 16 0 0 chr6 19291557 19291866 -163123376 + AluYa5 SINE Alu 1 309 -2 408 194 140 11 chr6 19291871 19291964 -163123278 - FLAM_C SINE Alu -36 107 3 305 241 0 46 chr6 19291988 19292075 -163123167 + MIR SINE MIR 72 154 -108 2376 166 123 17 chr6 19292130 19292595 -163122647 - MLT2B1 LTR ERVL -5 515 2 199 259 103 0 chr6 19292603 19292661 -163122581 + MIR SINE MIR 199 262 0 892 149 23 40 chr6 19292768 19292942 -163122300 + AluJo SINE Alu 121 291 -21 4517 129 75 92 chr6 19292947 19293307 -163121935 + L1MA9 LINE L1 5324 5689 -623 1827 132 0 21 chr6 19293307 19293644 -163121598 + AluSx SINE Alu 1 331 0 4517 129 75 92 chr6 19293644 19293744 -163121498 + L1MA9 LINE L1 5689 5789 -523 333 0 0 0 chr6 19293744 19293781 -163121461 + (CA)n Simple_repeat Simple_repeat 2 38 0 4517 129 75 92 chr6 19293781 19293930 -163121312 + L1MA9 LINE L1 5789 5939 -373 1726 164 6 16 chr6 19293930 19294242 -163121000 + AluJb SINE Alu 2 310 -2 4517 129 75 92 chr6 19294242 19294635 -163120607 + L1MA9 LINE L1 5939 6312 0 199 304 69 39 chr6 19294716 19294818 -163120424 + L2 LINE L2 3209 3313 0 296 246 0 0 chr6 19294898 19294959 -163120283 - MARNA DNA Mariner -177 409 349 277 314 174 16 chr6 19294959 19295080 -163120162 - MIR3 SINE MIR -2 206 67 1981 106 23 26 chr6 19295111 19295413 -163119829 - AluSx SINE Alu -11 301 1 282 335 96 5 chr6 19295427 19295636 -163119606 - MARNA DNA Mariner -271 315 88 813 142 0 0 chr6 19295788 19295915 -163119327 + AluSq/x SINE Alu 1 127 -185 1837 123 57 17 chr6 19295917 19296046 -163119196 + AluSx SINE Alu 1 123 -189 2244 107 0 0 chr6 19296046 19296356 -163118886 + AluSq SINE Alu 1 310 -3 1837 123 57 17 chr6 19296356 19296526 -163118716 + AluSx SINE Alu 123 312 0 813 165 0 0 chr6 19296601 19296734 -163118508 + FLAM_C SINE Alu 1 133 0 938 210 20 0 chr6 19296982 19297177 -163118065 - MER105 DNA DNA -2 202 4 1865 141 10 3 chr6 19297371 19297669 -163117573 - AluSx SINE Alu -10 302 3 963 34 0 0 chr6 19298403 19298520 -163116722 + AluY SINE Alu 184 300 -11 423 0 0 0 chr6 19298528 19298575 -163116667 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr6 19298634 19298657 -163116585 + AT_rich Low_complexity Low_complexity 1 23 0 837 155 0 0 chr6 19298657 19298786 -163116456 - FLAM_C SINE Alu -14 129 1 1891 89 4 0 chr6 19298829 19299086 -163116156 + AluSx SINE Alu 47 304 -8 933 114 0 0 chr6 19299108 19299239 -163116003 - AluSg/x SINE Alu -28 282 152 2228 102 0 3 chr6 19299352 19299656 -163115586 - AluSx SINE Alu -9 303 1 26 88 0 0 chr6 19299657 19299725 -163115517 + AT_rich Low_complexity Low_complexity 1 68 0 2246 89 3 0 chr6 19299725 19300027 -163115215 + AluY SINE Alu 1 303 -8 1531 167 4 8 chr6 19300049 19300313 -163114929 + AluJo SINE Alu 1 263 -49 1475 227 112 10 chr6 19301406 19301789 -163113453 - MLT2F LTR ERVL -58 605 184 1515 164 42 0 chr6 19301797 19302083 -163113159 + AluSx SINE Alu 3 300 -12 237 125 143 18 chr6 19302130 19302186 -163113056 - MLT2F LTR ERVL -600 63 1 271 344 73 0 chr6 19302273 19302369 -163112873 - FRAM SINE Alu -8 158 56 298 240 40 40 chr6 19302375 19302450 -163112792 - FRAM/FAM SINE Alu -97 78 4 5468 168 66 33 chr6 19302453 19302491 -163112751 - pTR5 LTR ERV1 -7 2431 2396 2665 41 0 0 chr6 19302491 19302809 -163112433 + AluYb8 SINE Alu 1 318 0 5468 168 66 33 chr6 19302809 19304261 -163110981 - pTR5 LTR ERV1 -42 2396 735 1895 134 7 0 chr6 19304315 19304606 -163110636 + AluSx SINE Alu 9 301 -11 505 152 0 0 chr6 19304606 19304685 -163110557 + AluJ/FLAM SINE Alu 21 99 -213 2039 125 3 0 chr6 19304734 19305037 -163110205 - AluSx SINE Alu -8 304 1 844 227 6 0 chr6 19305053 19305216 -163110026 + FRAM SINE Alu 1 159 -17 2162 119 0 0 chr6 19305219 19305530 -163109712 + AluSx SINE Alu 1 311 -1 341 202 96 0 chr6 19305533 19305627 -163109615 + MER115 DNA AcHobo 526 628 -65 596 246 22 78 chr6 19305957 19306016 -163109226 - L1MC4a LINE L1 -1894 5914 5853 1713 173 0 10 chr6 19306016 19306316 -163108926 - AluJo SINE Alu -7 305 9 596 246 22 78 chr6 19306316 19306387 -163108855 - L1MC4a LINE L1 -1955 5853 5780 1586 166 24 10 chr6 19306387 19306677 -163108565 - AluJb SINE Alu -18 294 1 596 246 22 78 chr6 19306677 19306777 -163108465 - L1MC4a LINE L1 -2028 5780 5696 1268 169 29 16 chr6 19306778 19307021 -163108221 - AluJb SINE Alu -32 280 35 342 241 121 0 chr6 19307077 19307218 -163108024 - L1P LINE L1 -1106 5040 4883 24 0 0 0 chr6 19307344 19307368 -163107874 + AT_rich Low_complexity Low_complexity 1 24 0 1974 132 3 10 chr6 19307592 19307903 -163107339 - AluSx SINE Alu -3 309 1 1024 299 66 21 chr6 19308157 19308581 -163106661 + LTR16B LTR ERVL 18 460 -4 1127 195 0 19 chr6 19408760 19408975 -163006267 - AluJo SINE Alu -1 311 101 392 276 98 37 chr6 19409066 19409229 -163006013 + MIR3 SINE MIR 23 195 -13 199 381 83 32 chr6 19410638 19410916 -163004326 - L3 LINE CR1 -23 1554 1263 759 242 113 17 chr6 19411357 19411588 -163003654 - MIR SINE MIR 0 262 10 264 30 0 0 chr6 19411657 19411690 -163003552 + (CA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr6 19411995 19412031 -163003211 + (TG)n Simple_repeat Simple_repeat 2 37 0 478 270 92 126 chr6 19412318 19412773 -163002469 + HAL1 LINE L1 813 1282 -1225 1732 142 25 4 chr6 19412773 19413054 -163002188 + AluSx SINE Alu 1 287 -25 478 270 92 126 chr6 19413054 19413077 -163002165 + HAL1 LINE L1 1282 1304 -1203 1048 58 47 6 chr6 19413077 19413248 -163001994 + GA-rich Low_complexity Low_complexity 3 180 0 478 270 92 126 chr6 19413248 19413476 -163001766 + HAL1 LINE L1 1304 1496 -1011 2402 58 6 0 chr6 19413678 19413990 -163001252 + L1PA4 LINE L1 5842 6155 0 1916 149 41 33 chr6 19414364 19414726 -163000516 - MLT1A1 LTR MaLR 0 365 1 1968 126 13 33 chr6 19414903 19415204 -163000038 + AluJb SINE Alu 1 295 -17 236 226 137 48 chr6 19415215 19415339 -162999903 + HAL1 LINE L1 2295 2429 -78 237 288 106 0 chr6 19415513 19415579 -162999663 - L2 LINE L2 -219 3053 2981 347 313 6 38 chr6 19415645 19415805 -162999437 - L2 LINE L2 -290 2982 2828 283 265 59 0 chr6 19415818 19415886 -162999356 + MER91C DNA MER1_type 35 106 -34 637 262 24 62 chr6 19416394 19416662 -162998580 - MIR SINE MIR -3 259 1 209 89 67 0 chr6 19416779 19416824 -162998418 + (TA)n Simple_repeat Simple_repeat 2 49 0 342 317 58 0 chr6 19416973 19417077 -162998165 + L2 LINE L2 3155 3264 -8 2126 124 0 0 chr6 19417285 19417593 -162997649 - AluSx SINE Alu 0 308 1 751 247 30 46 chr6 19417645 19417908 -162997334 + MIR SINE MIR 2 260 -2 511 306 124 0 chr6 19418746 19418955 -162996287 + MIR SINE MIR 2 236 -26 530 301 109 18 chr6 19420404 19420633 -162994609 - MIR SINE MIR -1 261 12 2349 109 0 0 chr6 19420758 19421062 -162994180 + AluSg SINE Alu 1 304 -6 2100 160 3 0 chr6 19421456 19421804 -162993438 + AluSx SINE Alu 1 349 0 3130 115 13 6 chr6 19423018 19423540 -162991702 + L1PB4 LINE L1 5260 5785 -371 195 42 0 0 chr6 19423543 19423567 -162991675 + (CA)n Simple_repeat Simple_repeat 2 25 0 1951 168 24 5 chr6 19423611 19423981 -162991261 + L1PB4 LINE L1 5780 6156 0 291 140 0 0 chr6 19425145 19425195 -162990047 + (A)n Simple_repeat Simple_repeat 1 50 0 1826 146 27 23 chr6 19426403 19426704 -162988538 - AluJo SINE Alu -5 307 6 296 300 127 0 chr6 19427044 19427154 -162988088 - L2 LINE L2 0 3272 3149 231 209 0 0 chr6 19427236 19427279 -162987963 + L2 LINE L2 3267 3309 -4 357 229 110 55 chr6 19427369 19427478 -162987764 - MIR SINE MIR -61 147 33 268 240 27 0 chr6 19427551 19427626 -162987616 - L3b LINE CR1 -383 1200 1124 180 0 0 0 chr6 19427801 19427821 -162987421 + (GGGTG)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr6 19428044 19428066 -162987176 + AT_rich Low_complexity Low_complexity 1 22 0 349 223 90 147 chr6 19428950 19429161 -162986081 - MIR SINE MIR 0 262 64 529 211 0 0 chr6 19429758 19429853 -162985389 + FLAM_A SINE Alu 1 95 -47 1453 193 3 24 chr6 19429853 19430143 -162985099 + AluJo SINE Alu 26 309 -3 448 338 59 34 chr6 19430229 19430466 -162984776 + MIR SINE MIR 12 254 -8 2112 132 0 13 chr6 19431073 19431376 -162983866 - AluSx SINE Alu -13 299 1 819 191 0 0 chr6 19431880 19432011 -162983231 - FLAM_A SINE Alu -2 131 1 195 42 0 0 chr6 19432022 19432046 -162983196 + (A)n Simple_repeat Simple_repeat 1 24 0 257 250 113 0 chr6 19432369 19432449 -162982793 - MIR SINE MIR -54 208 120 2188 110 13 0 chr6 19432780 19433079 -162982163 - AluSx SINE Alu -9 303 1 442 219 207 39 chr6 19434423 19434679 -162980563 + L2 LINE L2 3015 3313 0 511 238 204 83 chr6 19434721 19434861 -162980381 + L2 LINE L2 2560 2682 -631 2331 82 0 20 chr6 19434861 19435165 -162980077 + AluSg1 SINE Alu 1 298 -11 511 238 204 83 chr6 19435165 19435574 -162979668 + L2 LINE L2 2682 3215 -98 198 103 0 0 chr6 19435574 19435603 -162979639 + (CA)n Simple_repeat Simple_repeat 1 29 0 511 238 204 83 chr6 19435603 19435714 -162979528 + L2 LINE L2 3215 3311 -2 290 296 117 50 chr6 19435861 19436101 -162979141 + L2 LINE L2 3013 3268 -45 2018 151 0 0 chr6 19436846 19437145 -162978097 + AluJb SINE Alu 1 299 -13 289 338 112 39 chr6 19437204 19437686 -162977556 + L2 LINE L2 2288 2804 -510 595 157 0 0 chr6 19437883 19437985 -162977257 - AluSg/x SINE Alu -2 310 209 346 319 76 19 chr6 19437994 19438151 -162977091 + MIR SINE MIR 89 254 -8 189 268 0 0 chr6 19438884 19438925 -162976317 + L2 LINE L2 3231 3271 -1 2838 10 0 0 chr6 19440506 19440816 -162974426 - AluYa5 SINE Alu -1 310 1 2800 13 0 0 chr6 19442001 19442307 -162972935 - AluYa5 SINE Alu -5 306 1 791 182 0 0 chr6 19443108 19443229 -162972013 + FLAM_A SINE Alu 1 121 -12 1042 191 4 52 chr6 19443237 19443467 -162971775 - MER20 DNA MER1_type 0 219 1 746 110 110 17 chr6 19443630 19443748 -162971494 - FLAM_C SINE Alu -4 129 1 14196 182 12 0 chr6 19444008 19444599 -162970643 + L1PA13 LINE L1 2438 3020 -3143 1814 160 17 7 chr6 19444599 19444886 -162970356 + AluJb SINE Alu 3 292 -20 14196 182 12 0 chr6 19444886 19448001 -162967241 + L1PA13 LINE L1 3020 6162 -1 426 306 89 20 chr6 19448221 19448469 -162966773 + L1MC/D LINE L1 4936 5200 -946 2220 137 12 9 chr6 19448525 19448861 -162966381 - MER1B DNA MER1_type 0 337 1 872 291 20 12 chr6 19448949 19449200 -162966042 + MIR SINE MIR 1 253 -9 493 278 146 9 chr6 19449301 19449513 -162965729 + L1MC/D LINE L1 5513 5753 -2055 3108 120 29 4 chr6 19449513 19450003 -162965239 + L1PA16 LINE L1 5648 6149 -17 308 65 43 0 chr6 19450050 19450096 -162965146 + LTR54 LTR ERV1 402 449 -61 2173 119 9 25 chr6 19450153 19450471 -162964771 + AluSq SINE Alu 1 313 0 1545 178 44 30 chr6 19450631 19450929 -162964313 + AluJb SINE Alu 3 304 -8 2552 52 0 0 chr6 19451613 19451919 -162963323 + AluY SINE Alu 1 306 -5 531 222 106 48 chr6 19451991 19452180 -162963062 - MIR SINE MIR 0 262 63 455 288 120 20 chr6 19454187 19454424 -162960818 - MIR SINE MIR 0 262 1 263 226 0 48 chr6 19454529 19454591 -162960651 + L2 LINE L2 3246 3304 -9 2198 132 0 0 chr6 19454728 19455031 -162960211 + AluSx SINE Alu 1 303 -9 248 254 0 0 chr6 19455251 19455314 -162959928 - L1MC/D LINE L1 -1909 5899 5837 720 156 0 33 chr6 19455335 19455457 -162959785 - FRAM SINE Alu -14 162 45 2212 122 3 6 chr6 19456272 19456584 -162958658 + AluSq SINE Alu 1 311 -2 573 88 0 0 chr6 19457022 19457102 -162958140 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 537 285 50 26 chr6 19458858 19459359 -162955883 + L1MCc LINE L1 1130 1796 -4889 1394 243 75 33 chr6 19459360 19459589 -162955653 + L1MCc LINE L1 2144 2362 -4760 2108 86 4 11 chr6 19459589 19459868 -162955374 + AluSg SINE Alu 18 294 -16 1394 243 75 33 chr6 19459868 19460368 -162954874 + L1MCc LINE L1 2362 3094 -4028 819 168 0 40 chr6 19460375 19460524 -162954718 + FLAM_C SINE Alu 1 143 0 338 320 44 61 chr6 19460979 19461207 -162954035 + L2 LINE L2 2070 2293 -1021 194 298 85 0 chr6 19461995 19462089 -162953153 - MIR SINE MIR -7 255 154 248 316 164 6 chr6 19462137 19462308 -162952934 - MIR SINE MIR -56 206 9 2223 133 41 21 chr6 19462411 19462847 -162952395 + LTR7 LTR ERV1 1 445 -5 27 0 0 0 chr6 19462976 19463003 -162952239 + AT_rich Low_complexity Low_complexity 1 27 0 2111 172 160 13 chr6 19563886 19564350 -162850892 - MER21A LTR ERV1 -27 904 274 903 242 104 67 chr6 19564350 19564771 -162850471 - HAL1 LINE L1 -499 2008 1572 1339 147 0 0 chr6 19564821 19565012 -162850230 - AluSx SINE Alu -121 191 1 428 286 27 43 chr6 19565022 19565207 -162850035 - HAL1 LINE L1 -1245 1262 1081 1779 155 0 7 chr6 19565211 19565488 -162849754 + AluJo SINE Alu 30 304 -8 819 173 79 0 chr6 19565572 19565759 -162849483 - FRAM SINE Alu 0 194 1 1618 254 79 31 chr6 19565760 19566366 -162848876 - HAL1 LINE L1 -1806 701 67 295 211 0 0 chr6 19566519 19566576 -162848666 + MER4D LTR ERV1 1 57 -846 652 78 0 0 chr6 19566577 19566667 -162848575 - AluSp/q SINE Alu -3 310 221 2717 144 26 1 chr6 19566669 19567295 -162847947 + MER72 LTR ERV1 49 722 0 1384 162 22 0 chr6 19567930 19568152 -162847090 - AluJo SINE Alu -21 291 65 458 195 66 25 chr6 19568370 19568511 -162846731 - L1ME3 LINE L1 0 6164 6015 1264 160 0 18 chr6 19568568 19568793 -162846449 + AluJo SINE Alu 84 304 -8 307 191 35 29 chr6 19569093 19569266 -162845976 + C-rich Low_complexity Low_complexity 3 176 0 1967 92 4 11 chr6 19570664 19570925 -162844317 + AluSx SINE Alu 39 297 -15 226 238 40 26 chr6 19571566 19571717 -162843525 + (TA)n Simple_repeat Simple_repeat 1 153 0 2498 59 3 3 chr6 19571802 19572105 -162843137 - AluY SINE Alu -8 303 1 286 82 20 0 chr6 19572288 19572337 -162842905 + Alu SINE Alu 259 308 0 2297 107 0 0 chr6 19572961 19573259 -162841983 - AluSg SINE Alu -12 298 1 435 274 78 0 chr6 19573451 19573604 -162841638 - MIR SINE MIR -2 260 96 679 175 32 8 chr6 19573626 19573752 -162841490 + FLAM_A SINE Alu 5 133 0 2304 85 0 10 chr6 19574448 19574743 -162840499 + AluY SINE Alu 1 292 -19 369 136 45 0 chr6 19574823 19574889 -162840353 - AluS SINE Alu 0 301 233 965 163 0 19 chr6 19574889 19575049 -162840193 - AluJo SINE Alu -155 157 1 2146 124 0 3 chr6 19576033 19576331 -162838911 + AluSx SINE Alu 1 297 -15 463 191 75 11 chr6 19577137 19577231 -162838011 - AluSc SINE Alu -10 299 200 870 111 0 0 chr6 19577236 19577353 -162837889 - FLAM_C SINE Alu -15 118 2 2091 241 78 72 chr6 19577397 19578129 -162837113 - L1MEc LINE L1 -2956 3259 2533 1924 147 0 42 chr6 19578129 19578435 -162836807 - AluSx SINE Alu -19 293 1 2091 241 78 72 chr6 19578435 19578652 -162836590 - L1MEc LINE L1 -3682 2533 2339 2047 111 42 0 chr6 19578652 19578940 -162836302 - AluSx SINE Alu -12 300 1 2091 241 78 72 chr6 19578940 19579107 -162836135 - L1MEc LINE L1 -3876 2339 2174 1660 82 15 0 chr6 19579123 19579329 -162835913 - AluY SINE Alu -7 304 96 2095 143 3 10 chr6 19579563 19579877 -162835365 + AluSx SINE Alu 1 312 0 806 181 12 44 chr6 19579891 19580051 -162835191 + FAM SINE Alu 1 45 -4 1358 170 49 99 chr6 19580585 19580909 -162834333 + AluJo SINE Alu 1 308 -4 2322 84 3 7 chr6 19581098 19581396 -162833846 + AluSc SINE Alu 1 297 -12 1992 145 0 0 chr6 19581502 19581792 -162833450 - AluJb SINE Alu -18 294 5 1623 198 10 0 chr6 19581794 19582082 -162833160 - AluJo SINE Alu -21 291 1 3170 194 79 36 chr6 19582139 19582888 -162832354 - L1MB5 LINE L1 -1 6170 5454 2138 128 0 0 chr6 19582888 19583194 -162832048 - AluSx SINE Alu -6 306 1 3170 194 79 36 chr6 19583194 19583257 -162831985 - L1MB5 LINE L1 -717 5454 5395 2117 107 31 3 chr6 19583257 19583548 -162831694 - AluSq SINE Alu -14 299 1 3170 194 79 36 chr6 19583548 19583880 -162831362 - L1MB5 LINE L1 -776 5395 4929 2036 108 35 7 chr6 19583931 19584219 -162831023 - AluSx SINE Alu -11 301 6 1334 153 47 0 chr6 19584222 19584458 -162830784 - L1MD3 LINE L1 -20 7975 7729 1866 160 3 3 chr6 19584509 19584802 -162830440 - AluJb SINE Alu -19 293 1 2552 65 0 0 chr6 19584835 19585142 -162830100 - AluY SINE Alu -4 307 1 273 278 126 84 chr6 19585598 19585979 -162829263 - MLT1L LTR MaLR -2 613 217 410 103 0 0 chr6 19586379 19586437 -162828805 - L1MB7 LINE L1 -19 6165 6108 1192 115 148 60 chr6 19586445 19586662 -162828580 + MER46A DNA MER2_type 1 236 0 22 70 0 0 chr6 19586724 19586767 -162828475 + AT_rich Low_complexity Low_complexity 1 43 0 2021 192 158 47 chr6 19586780 19586830 -162828412 - L1M4 LINE L1 -495 5683 5640 2405 97 0 0 chr6 19586830 19587129 -162828113 + AluSq SINE Alu 1 299 -14 2021 192 158 47 chr6 19587129 19587804 -162827438 - L1M4 LINE L1 -538 5640 5042 216 0 0 0 chr6 19587804 19587828 -162827414 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 2296 75 0 0 chr6 19587828 19588106 -162827136 - AluSg SINE Alu -32 278 1 2021 192 158 47 chr6 19588106 19588432 -162826810 - L1M4 LINE L1 -1135 5043 4529 10827 164 23 17 chr6 19588492 19591561 -162823681 - L1PB1 LINE L1 0 6151 3069 225 0 0 0 chr6 19591568 19591593 -162823649 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 859 136 0 0 chr6 19591605 19591730 -162823512 - FLAM_C SINE Alu -17 126 2 267 143 20 20 chr6 19591734 19591783 -162823459 + MER58A DNA MER1_type 44 92 -15 668 150 231 7 chr6 19591798 19591945 -162823297 + MER58A DNA MER1_type 44 223 -1 2768 272 66 40 chr6 19591946 19592112 -162823130 - L1M4 LINE L1 -1612 4534 4374 2219 98 3 10 chr6 19592112 19592408 -162822834 - AluSx SINE Alu -18 294 1 2206 112 7 3 chr6 19592410 19592713 -162822529 - AluSg SINE Alu -6 304 1 2768 272 66 40 chr6 19592713 19593772 -162821470 - L1M4 LINE L1 -1772 4374 3274 1141 194 0 42 chr6 19593874 19594111 -162821131 - AluJo SINE Alu 0 312 86 2100 129 0 0 chr6 19594593 19594888 -162820354 - AluSx SINE Alu -17 295 1 1098 253 96 73 chr6 19595120 19595509 -162819733 - HAL1b LINE L1 -3 1345 966 1743 148 69 0 chr6 19595509 19595786 -162819456 + AluJo SINE Alu 5 300 -12 1098 253 96 73 chr6 19595786 19596159 -162819083 - HAL1b LINE L1 -382 966 566 26 0 0 0 chr6 19596338 19596364 -162818878 + AT_rich Low_complexity Low_complexity 1 26 0 555 288 62 65 chr6 19596460 19596555 -162818687 - L1MC4a LINE L1 -1900 5908 5814 1675 154 44 17 chr6 19596555 19596853 -162818389 - AluJo SINE Alu -6 306 1 555 288 62 65 chr6 19596853 19597063 -162818179 - L1MC4a LINE L1 -1994 5814 5604 2295 93 30 3 chr6 19597281 19597582 -162817660 - AluSq SINE Alu -4 309 1 583 274 72 48 chr6 19597654 19597986 -162817256 - L1ME3A LINE L1 -218 5952 5613 1540 213 75 65 chr6 19598009 19598218 -162817024 - L1ME3A LINE L1 -5 6165 5960 180 0 0 0 chr6 19598218 19598238 -162817004 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1540 213 75 65 chr6 19598238 19598293 -162816949 - L1ME3A LINE L1 -210 5960 5907 2394 92 0 0 chr6 19598293 19598597 -162816645 - AluSx SINE Alu -8 304 1 1540 213 75 65 chr6 19598597 19598753 -162816489 - L1ME3A LINE L1 -263 5907 5754 1832 157 43 0 chr6 19598753 19599052 -162816190 - AluJo SINE Alu 0 312 1 1540 213 75 65 chr6 19599052 19599215 -162816027 - L1ME3A LINE L1 -416 5754 5574 1999 123 0 63 chr6 19599327 19599644 -162815598 - AluSx SINE Alu -15 297 1 2700 111 24 8 chr6 19600603 19600972 -162814270 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr6 19600996 19601023 -162814219 + (CA)n Simple_repeat Simple_repeat 2 28 0 964 123 0 0 chr6 19602125 19602255 -162812987 + FLAM_C SINE Alu 1 130 -3 21 0 0 0 chr6 19602258 19602279 -162812963 + AT_rich Low_complexity Low_complexity 1 21 0 1088 171 0 0 chr6 19602627 19602803 -162812439 - AluSg/x SINE Alu -3 307 132 2330 109 0 0 chr6 19602803 19603106 -162812136 - AluSx SINE Alu -9 303 1 749 236 185 35 chr6 19603315 19603683 -162811559 + L1ME4a LINE L1 5476 5898 -223 2103 113 3 23 chr6 19603886 19604186 -162811056 + AluSg SINE Alu 1 294 -16 876 152 17 73 chr6 19604208 19604333 -162810909 + L1MB2 LINE L1 6002 6132 -39 2396 59 0 36 chr6 19604333 19604639 -162810603 + AluY SINE Alu 1 295 -16 1996 149 3 0 chr6 19604642 19604937 -162810305 + AluSx SINE Alu 1 296 -16 876 152 17 73 chr6 19604937 19604985 -162810257 + L1MB2 LINE L1 6134 6169 -2 1083 165 85 0 chr6 19605498 19605698 -162809544 - MER20 DNA MER1_type 0 219 3 1938 160 0 10 chr6 19606000 19606293 -162808949 + AluJb SINE Alu 1 290 -22 854 131 0 0 chr6 19606654 19606776 -162808466 + FLAM_A SINE Alu 8 129 -13 2295 100 0 7 chr6 19606935 19607244 -162807998 + AluSq SINE Alu 1 307 -6 1857 169 16 10 chr6 19607320 19607627 -162807615 - AluJo SINE Alu -3 309 1 2302 93 0 10 chr6 19607902 19608202 -162807040 - AluSq SINE Alu -16 297 1 996 29 7 79 chr6 19608203 19608342 -162806900 - AluSq/x SINE Alu -178 135 7 2930 158 42 52 chr6 19608633 19608689 -162806553 - L1MB5 LINE L1 0 6174 6119 864 129 0 58 chr6 19608689 19608828 -162806414 - FLAM_C SINE Alu -2 131 1 2930 158 42 52 chr6 19608828 19609367 -162805875 - L1MB5 LINE L1 -55 6119 5585 5200 130 43 45 chr6 19609398 19609477 -162805765 - L1MA8 LINE L1 -5 6286 6208 2368 97 3 3 chr6 19609477 19609786 -162805456 + AluSx SINE Alu 1 309 -3 5200 130 43 45 chr6 19609786 19610621 -162804621 - L1MA8 LINE L1 -83 6208 5372 1655 170 88 13 chr6 19610621 19610938 -162804304 - MER2 DNA MER2_type -3 341 1 5200 130 43 45 chr6 19610938 19611039 -162804203 - L1MA8 LINE L1 -919 5372 5272 1858 121 110 0 chr6 19611949 19612222 -162803020 - AluSx SINE Alu -9 303 1 22 35 0 0 chr6 19612368 19612397 -162802845 + AT_rich Low_complexity Low_complexity 1 29 0 998 135 0 0 chr6 19612414 19612555 -162802687 - AluSq/x SINE Alu -171 141 1 788 52 0 0 chr6 19612594 19612691 -162802551 + AluY SINE Alu 212 308 -3 1560 156 0 93 chr6 19612914 19613235 -162802007 + AluJb SINE Alu 1 291 -21 28 0 0 0 chr6 19613728 19613756 -162801486 + AT_rich Low_complexity Low_complexity 1 28 0 1917 149 17 0 chr6 19613913 19614202 -162801040 - AluSx SINE Alu -18 294 1 676 137 29 127 chr6 19614863 19615068 -162800174 + MER53 DNA DNA 1 185 -4 1586 167 17 17 chr6 19616152 19616439 -162798803 + AluJo SINE Alu 6 292 -20 958 161 37 0 chr6 19617166 19617327 -162797915 + FRAM SINE Alu 1 167 -9 2249 113 3 0 chr6 19617601 19617901 -162797341 + AluSx SINE Alu 2 302 -10 1732 150 39 0 chr6 19618246 19618526 -162796716 + AluJb SINE Alu 14 304 -8 379 0 0 0 chr6 19619327 19619371 -162795871 + L1PA3 LINE L1 6109 6152 -3 2063 70 4 4 chr6 19619742 19619999 -162795243 + AluSc SINE Alu 1 257 -52 23 0 0 0 chr6 19620005 19620028 -162795214 + AT_rich Low_complexity Low_complexity 1 23 0 1785 167 0 3 chr6 19620264 19620546 -162794696 + AluJo SINE Alu 1 281 -31 945 130 0 0 chr6 19620622 19620753 -162794489 - FLAM_C SINE Alu -10 133 3 182 323 48 0 chr6 19622076 19622138 -162793104 - MIR3 SINE MIR -6 202 138 252 86 0 0 chr6 19622624 19622659 -162792583 + (TA)n Simple_repeat Simple_repeat 2 36 0 2476 62 0 31 chr6 19622663 19622984 -162792258 - AluY SINE Alu 0 311 1 379 216 45 11 chr6 19622992 19623080 -162792162 - MER103 DNA DNA -73 93 3 188 273 45 45 chr6 19623543 19623631 -162791611 - MER5B DNA MER1_type -13 165 78 1089 141 0 12 chr6 19623634 19623804 -162791438 - FRAM SINE Alu -10 166 1 346 122 0 0 chr6 19623810 19623859 -162791383 + MER5B DNA MER1_type 126 174 -4 1832 155 9 29 chr6 19624374 19624690 -162790552 - AluJo SINE Alu 0 312 3 1804 146 0 7 chr6 19624751 19625031 -162790211 + AluJo SINE Alu 5 282 -30 214 276 163 24 chr6 19625842 19625965 -162789277 - MIR3 SINE MIR -61 147 8 2355 83 10 0 chr6 19625976 19626276 -162788966 - AluSx SINE Alu -9 303 1 306 169 28 84 chr6 19626348 19626419 -162788823 - MER91A DNA MER1_type -128 68 2 2235 114 3 9 chr6 19627186 19627501 -162787741 + AluSq SINE Alu 1 313 0 2437 92 0 9 chr6 19628659 19628974 -162786268 + AluSx SINE Alu 1 312 0 2339 167 8 0 chr6 19629320 19629704 -162785538 - MLT1B LTR MaLR -3 387 1 2170 91 0 4 chr6 19630097 19630403 -162784839 - AluSx SINE Alu 0 314 10 751 222 296 0 chr6 19630578 19630781 -162784461 + Tigger7 DNA MER2_type 1 263 -2224 * 1201 136 79 0 chr6 19630778 19630992 -162784250 + Tigger7 DNA MER2_type 2357 2587 0 2404 66 3 16 chr6 19631407 19631712 -162783530 - AluY SINE Alu -10 301 1 684 269 133 70 chr6 19631964 19632151 -162783091 - HAL1 LINE L1 -6 2501 2327 1900 156 3 10 chr6 19632151 19632453 -162782789 - AluJo SINE Alu -12 300 1 684 269 133 70 chr6 19632453 19632923 -162782319 - HAL1 LINE L1 -180 2327 1791 2483 68 0 10 chr6 19632923 19633232 -162782010 - AluY SINE Alu -5 306 1 684 269 133 70 chr6 19633232 19633305 -162781937 - HAL1 LINE L1 -716 1791 1724 344 235 184 14 chr6 19633379 19633596 -162781646 - HAL1 LINE L1 -1244 1263 1010 261 308 62 8 chr6 19634021 19634151 -162781091 - HAL1 LINE L1 -2134 373 237 2127 100 28 0 chr6 19634302 19634593 -162780649 + AluSx SINE Alu 1 299 -13 1646 112 115 15 chr6 19634801 19635070 -162780172 - AluSx SINE Alu -11 301 6 22 0 0 0 chr6 19637367 19637389 -162777853 + GC_rich Low_complexity Low_complexity 1 22 0 1616 184 0 4 chr6 19640530 19640801 -162774441 + AluJb SINE Alu 1 270 -42 7170 77 43 2 chr6 19640801 19641730 -162773512 + LTR5 LTR ERVK 1 969 0 920 196 26 78 chr6 19642148 19642378 -162772864 - MER58A DNA MER1_type -3 221 4 40211 57 36 2 chr6 19642423 19648313 -162766929 + L1PA5 LINE L1 3 6100 -54 204 40 0 0 chr6 19648313 19648338 -162766904 + (TA)n Simple_repeat Simple_repeat 1 25 0 40211 57 36 2 chr6 19648338 19648395 -162766847 + L1PA5 LINE L1 6100 6154 0 206 282 20 128 chr6 19649485 19649680 -162765562 + L2 LINE L2 3031 3204 -68 876 145 30 0 chr6 19649691 19649822 -162765420 - AluJo SINE Alu -177 135 1 221 308 62 0 chr6 19649824 19649889 -162765353 + L2 LINE L2 3244 3312 -1 368 246 109 0 chr6 19650288 19650398 -162764844 + L2 LINE L2 3192 3313 0 22 0 0 0 chr6 19650641 19650663 -162764579 + AT_rich Low_complexity Low_complexity 1 22 0 789 153 15 8 chr6 19650838 19650969 -162764273 + Tigger4(Zombi) DNA MER2_type 1 132 -2599 495 250 9 9 chr6 19650979 19651091 -162764151 + FRAM SINE Alu 1 112 -64 856 103 146 65 chr6 19651104 19651289 -162763953 + Tigger4(Zombi) DNA MER2_type 2532 2731 0 2322 94 0 7 chr6 19651894 19652202 -162763040 - AluSx SINE Alu -6 306 1 349 256 12 0 chr6 19652209 19652291 -162762951 + L2 LINE L2 3229 3311 -2 335 255 151 9 chr6 19652287 19652393 -162762849 - MIR SINE MIR -130 132 12 * 2037 120 41 0 chr6 19652450 19652741 -162762501 + AluSc SINE Alu 1 303 -6 2249 87 3 20 chr6 19652958 19653257 -162761985 - AluSp SINE Alu -19 294 1 688 163 114 32 chr6 19653380 19653503 -162761739 - FLAM_A SINE Alu 0 133 1 452 294 234 19 chr6 19654403 19654617 -162760625 + MIR SINE MIR 3 262 0 795 180 0 0 chr6 19654709 19654831 -162760411 + FLAM_C SINE Alu 2 123 -10 805 254 93 10 chr6 19655707 19655900 -162759342 - MER58C DNA MER1_type -5 210 2 1453 144 121 0 chr6 19656148 19656412 -162758830 + AluSg SINE Alu 1 296 -14 4436 168 25 18 chr6 19656417 19657145 -162758097 + MER44D DNA MER2_type 1 605 0 782 174 223 38 chr6 19657829 19658013 -162757229 + AluJo SINE Alu 70 287 -25 467 320 67 67 chr6 19659095 19659439 -162755803 + MLT1J LTR MaLR 105 448 -63 2493 117 40 6 chr6 19659806 19660158 -162755084 + THE1B LTR MaLR 1 364 0 189 250 125 14 chr6 19660801 19660873 -162754369 - MIR3 SINE MIR -44 164 85 2221 96 7 3 chr6 19661713 19662006 -162753236 - AluSx SINE Alu -18 294 1 634 224 154 33 chr6 19662098 19662312 -162752930 - MIR SINE MIR 0 262 23 361 90 34 18 chr6 19662799 19662901 -162752341 + MER20 DNA MER1_type 31 195 -24 2292 60 0 0 chr6 19664251 19664533 -162750709 + AluY SINE Alu 30 311 0 244 95 0 0 chr6 19664611 19664653 -162750589 - AluSx SINE Alu 0 299 258 1327 110 6 0 chr6 19664656 19664829 -162750413 - AluSx SINE Alu -138 174 1 1788 206 3 0 chr6 19666262 19666573 -162748669 + AluJb SINE Alu 1 312 0 4127 169 134 108 chr6 19666675 19667766 -162747476 + Charlie1a DNA MER1_type 5 1067 -1694 1377 196 55 0 chr6 19667766 19668037 -162747205 - AluJo SINE Alu -26 286 1 4127 169 134 108 chr6 19668037 19668083 -162747159 + Charlie1a DNA MER1_type 1067 1110 -1651 2134 117 0 7 chr6 19668083 19668410 -162746832 + AluSx SINE Alu 1 312 0 4127 169 134 108 chr6 19668410 19668686 -162746556 + Charlie1a DNA MER1_type 1110 1455 0 2438 70 10 0 chr6 19670021 19670321 -162744921 - AluSp SINE Alu -10 303 1 1943 149 6 19 chr6 19671464 19671780 -162743462 + AluJb SINE Alu 1 312 0 303 333 30 15 chr6 19671788 19671920 -162743322 + MIR3 SINE MIR 36 169 -39 794 62 0 0 chr6 19673088 19673184 -162742058 + AluY SINE Alu 6 101 -210 243 0 0 0 chr6 19673184 19673211 -162742031 + Alu SINE Alu 70 96 -205 1968 69 0 4 chr6 19673214 19673459 -162741783 + AluY SINE Alu 68 311 0 198 288 24 56 chr6 19673955 19674080 -162741162 + L2 LINE L2 2159 2279 -1035 1939 131 66 19 chr6 19674091 19674411 -162740831 + MER2 DNA MER2_type 9 343 -2 350 312 55 15 chr6 19674412 19674614 -162740628 + L2 LINE L2 2281 2490 -824 2728 134 140 110 chr6 19674666 19674753 -162740489 + MSTB-int LTR MaLR 942 1025 -626 1745 163 54 0 chr6 19674753 19675047 -162740195 + AluJb SINE Alu 1 310 -2 2728 134 140 110 chr6 19675047 19675325 -162739917 + MSTB-int LTR MaLR 1025 1293 -358 2134 122 7 0 chr6 19675325 19675628 -162739614 + AluSp SINE Alu 1 305 -8 2728 134 140 110 chr6 19675628 19675945 -162739297 + MSTB-int LTR MaLR 1293 1646 -5 2179 150 85 13 chr6 19675950 19676353 -162738889 + MSTB LTR MaLR 1 364 0 23 0 0 0 chr6 19676790 19676813 -162738429 + AT_rich Low_complexity Low_complexity 1 23 0 282 132 0 0 chr6 19677882 19677935 -162737307 + (TCC)n Simple_repeat Simple_repeat 2 54 0 334 266 100 123 chr6 19677988 19678409 -162736833 + L1M2 LINE L1 594 1004 -5845 28 29 0 0 chr6 19678635 19678670 -162736572 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr6 19678929 19678960 -162736282 + GC_rich Low_complexity Low_complexity 1 31 0 182 326 39 23 chr6 19679512 19679641 -162735601 + L2 LINE L2 2433 2563 -751 4441 166 140 87 chr6 19679659 19680533 -162734709 - MER52A LTR ERV1 -456 1299 251 699 97 0 0 chr6 19680533 19680626 -162734616 - AluSg/x SINE Alu -4 305 213 4441 166 140 87 chr6 19680626 19680892 -162734350 - MER52A LTR ERV1 -1504 251 1 2102 236 86 46 chr6 19681107 19681975 -162733267 - L2 LINE L2 -816 2498 1596 1075 266 96 29 chr6 19681994 19682411 -162732831 - LTR16A LTR ERVL -5 445 1 1682 290 37 24 chr6 19682413 19683034 -162732208 - L2 LINE L2 -1732 1582 954 628 230 146 11 chr6 19683043 19683221 -162732021 + L2 LINE L2 3112 3313 0 320 333 35 0 chr6 19683831 19683945 -162731297 + L2 LINE L2 3191 3308 -5 2368 103 0 0 chr6 19684013 19684315 -162730927 + AluSp SINE Alu 1 302 -11 2259 107 7 3 chr6 19685065 19685374 -162729868 - AluSx SINE Alu -2 310 1 816 151 123 0 chr6 19685624 19685770 -162729472 + MER20 DNA MER1_type 1 164 -55 1040 83 0 0 chr6 19685774 19685906 -162729336 - FLAM_C SINE Alu 0 133 2 2149 161 59 11 chr6 19686377 19686749 -162728493 + MLT2B1 LTR ERVL 1 390 -130 223 274 0 0 chr6 19686749 19686811 -162728431 + A-rich Low_complexity Low_complexity 1 62 0 680 129 0 0 chr6 19687200 19687301 -162727941 - HY3 scRNA scRNA 0 101 1 2145 111 44 0 chr6 19687381 19687678 -162727564 + AluSx SINE Alu 1 310 -2 1830 171 3 0 chr6 19688057 19688343 -162726899 - AluJb SINE Alu -25 287 1 1569 154 8 19 chr6 19688534 19688801 -162726441 - AluJo SINE Alu -12 300 37 40 0 0 0 chr6 19688849 19688889 -162726353 + AT_rich Low_complexity Low_complexity 1 40 0 2185 143 24 8 chr6 19688889 19689266 -162725976 - L1PB3 LINE L1 -7 6147 5765 193 286 48 12 chr6 19689287 19689371 -162725871 + L2 LINE L2 2791 2877 -437 188 298 18 0 chr6 19689620 19689677 -162725565 + L2 LINE L2 3202 3259 -54 1980 146 10 0 chr6 19689745 19690039 -162725203 + AluJb SINE Alu 1 297 -15 38 85 0 0 chr6 19690520 19690614 -162724628 + AT_rich Low_complexity Low_complexity 1 94 0 183 184 0 0 chr6 19692259 19692297 -162722945 + (TG)n Simple_repeat Simple_repeat 2 39 0 2371 82 0 10 chr6 19692532 19692836 -162722406 - AluSx SINE Alu -6 306 6 250 303 0 26 chr6 19694567 19694643 -162720599 - MIR3 SINE MIR -5 203 130 667 161 17 0 chr6 19694836 19694954 -162720288 + FLAM_C SINE Alu 2 121 -22 32 0 0 0 chr6 19694954 19694986 -162720256 + AT_rich Low_complexity Low_complexity 1 32 0 1341 146 0 39 chr6 19695289 19695522 -162719720 - AluJb SINE Alu 0 312 89 592 172 0 0 chr6 19695564 19695657 -162719585 - AluJb SINE Alu -218 94 2 523 175 8 8 chr6 19695717 19695843 -162719399 + CT-rich Low_complexity Low_complexity 1 126 0 989 182 0 11 chr6 19695855 19696031 -162719211 - FRAM SINE Alu -2 174 1 209 256 141 0 chr6 19696246 19696324 -162718918 - MIR SINE MIR -92 170 82 2202 105 20 3 chr6 19696411 19696707 -162718535 + AluSc SINE Alu 1 301 -8 297 227 102 11 chr6 19696749 19696837 -162718405 + L2 LINE L2 3210 3305 -8 392 279 122 27 chr6 19697008 19697155 -162718087 + L2 LINE L2 3111 3271 -1 2133 130 3 0 chr6 19697297 19697590 -162717652 - AluSx SINE Alu -12 300 7 267 224 0 40 chr6 19697644 19697720 -162717522 + MER20B DNA MER1_type 540 612 -171 598 208 66 20 chr6 19697726 19697923 -162717319 + MER20B DNA MER1_type 578 783 0 315 0 0 0 chr6 19698006 19698041 -162717201 + (TA)n Simple_repeat Simple_repeat 1 35 0 2118 97 24 7 chr6 19698042 19698330 -162716912 - AluSq SINE Alu 0 313 21 751 151 0 24 chr6 19698798 19698914 -162716328 + FLAM_C SINE Alu 2 116 -186 402 21 0 0 chr6 19698914 19698961 -162716281 + (CA)n Simple_repeat Simple_repeat 1 47 0 2234 118 3 0 chr6 19699051 19699347 -162715895 + AluSg SINE Alu 1 297 -13 25 51 0 0 chr6 19699441 19699480 -162715762 + AT_rich Low_complexity Low_complexity 1 39 0 1561 156 0 101 chr6 19699488 19699633 -162715609 + AluJb SINE Alu 1 159 -143 1763 136 0 54 chr6 19699633 19699912 -162715330 + AluSx SINE Alu 4 267 -45 1561 156 0 101 chr6 19699912 19699935 -162715307 + AluJb SINE Alu 159 183 -119 236 30 30 0 chr6 19699935 19699968 -162715274 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1561 156 0 101 chr6 19699968 19700124 -162715118 + AluJb SINE Alu 183 293 -9 313 288 33 49 chr6 19700183 19700426 -162714816 - L1ME4a LINE L1 -44 6077 5839 220 259 0 0 chr6 19700540 19700594 -162714648 + (TG)n Simple_repeat Simple_repeat 1 54 0 303 93 0 0 chr6 19700594 19700637 -162714605 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 57 0 0 chr6 19700772 19700807 -162714435 + AT_rich Low_complexity Low_complexity 1 35 0 1567 78 11 117 chr6 19700878 19701159 -162714083 - L1MA5A LINE L1 -10 6287 6037 457 167 0 0 chr6 19701163 19701235 -162714007 + AluS SINE Alu 223 294 -16 262 327 85 28 chr6 19701690 19702008 -162713234 - L2 LINE L2 -1190 2124 1789 2637 43 0 3 chr6 19702148 19702450 -162712792 + AluY SINE Alu 1 301 -10 2008 145 0 0 chr6 19702517 19702827 -162712415 + AluJb SINE Alu 1 310 0 224 349 76 0 chr6 19702965 19703097 -162712145 + L2 LINE L2 1562 1703 -1611 2118 107 21 0 chr6 19703107 19703397 -162711845 + AluSg SINE Alu 1 296 -14 188 333 25 43 chr6 19703399 19703561 -162711681 - L2 LINE L2 -705 2609 2451 194 79 0 53 chr6 19703850 19703888 -162711354 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 2315 64 3 7 chr6 19704673 19704983 -162710259 - AluSg1 SINE Alu 0 309 1 418 155 0 0 chr6 19705384 19705455 -162709787 + AluJ/FLAM SINE Alu 1 71 -241 469 179 0 0 chr6 19705458 19705536 -162709706 - AluJ/FLAM SINE Alu -233 79 2 235 85 0 85 chr6 19705537 19705584 -162709658 - MLT2B1 LTR ERVL -372 143 101 2252 108 14 0 chr6 19705593 19705888 -162709354 - AluSx SINE Alu -13 299 1 683 135 45 0 chr6 19705888 19705999 -162709243 - MLT2B1 LTR ERVL -404 116 1 2294 109 6 6 chr6 19706218 19706530 -162708712 - AluSq SINE Alu -1 312 1 240 35 0 0 chr6 19706530 19706559 -162708683 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1638 162 52 4 chr6 19706559 19706831 -162708411 - AluJo SINE Alu -27 285 1 31 0 0 0 chr6 19706842 19706873 -162708369 + AT_rich Low_complexity Low_complexity 1 31 0 1878 172 0 0 chr6 19706873 19707164 -162708078 - AluJb SINE Alu -21 291 1 2284 86 16 0 chr6 19707924 19708102 -162707140 - AluY SINE Alu -2 309 122 210 37 0 0 chr6 19708102 19708129 -162707113 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2284 86 16 0 chr6 19708129 19708254 -162706988 - AluY SINE Alu -189 122 1 521 229 145 50 chr6 19708289 19708550 -162706692 + MLT1E LTR MaLR 2 391 -263 255 248 60 34 chr6 19708675 19708792 -162706450 - L1MEd LINE L1 -5016 1103 984 302 295 73 109 chr6 19708864 19709193 -162706049 - MLT1I LTR MaLR -80 329 13 1876 132 33 0 chr6 19709430 19709728 -162705514 - AluSq SINE Alu 0 307 1 1596 168 0 83 chr6 19709734 19710061 -162705181 - AluJb SINE Alu -8 304 5 243 190 63 25 chr6 19710457 19710536 -162704706 - L1MC4 LINE L1 -1337 6705 6624 744 168 0 8 chr6 19710553 19710678 -162704564 - FLAM_C SINE Alu -9 124 1 2470 74 0 0 chr6 19710875 19711173 -162704069 + AluSx SINE Alu 1 298 -14 1846 143 17 34 chr6 19711185 19711479 -162703763 + AluSx SINE Alu 1 289 -23 284 264 18 106 chr6 19711580 19711702 -162703540 - L1M4 LINE L1 -1501 4645 4559 1474 173 60 0 chr6 19711702 19711986 -162703256 + AluJb SINE Alu 22 320 0 284 264 18 106 chr6 19711986 19712146 -162703096 - L1M4 LINE L1 -1587 4559 4387 2398 104 0 0 chr6 19712490 19712797 -162702445 + AluSx SINE Alu 1 307 -5 2294 81 0 7 chr6 19713269 19713578 -162701664 - AluY SINE Alu 0 307 1 2265 91 11 0 chr6 19714145 19714431 -162700811 - AluSp SINE Alu -24 289 1 1409 185 56 4 chr6 19714841 19715111 -162700131 - AluJo SINE Alu -28 284 1 2253 110 0 0 chr6 19715763 19716053 -162699189 - AluSg SINE Alu -20 290 1 2280 92 7 3 chr6 19716053 19716347 -162698895 - AluSx SINE Alu -17 295 1 341 221 164 29 chr6 19716458 19716562 -162698680 - MIR3 SINE MIR -26 182 65 627 125 19 19 chr6 19716747 19716851 -162698391 - AluJo SINE Alu -10 302 199 886 163 7 7 chr6 19716851 19716998 -162698244 - AluJo SINE Alu -165 147 1 677 122 0 0 chr6 19717111 19717218 -162698024 - L1MA8 LINE L1 -3 6288 6182 410 263 51 0 chr6 19717258 19717376 -162697866 + MLT1I LTR MaLR 258 381 -28 305 305 156 26 chr6 19717679 19717833 -162697409 + MIR3 SINE MIR 32 205 -3 2172 107 7 3 chr6 19718053 19718342 -162696900 + AluSc SINE Alu 3 292 -17 2004 155 0 3 chr6 19718606 19718902 -162696340 - AluJb SINE Alu -17 295 1 2478 68 0 0 chr6 19719511 19719807 -162695435 - AluY SINE Alu -15 296 1 1987 113 41 17 chr6 19719874 19720167 -162695075 - AluSq SINE Alu -4 309 10 1803 156 0 43 chr6 19720243 19720545 -162694697 - AluJo SINE Alu -23 289 1 1659 129 0 0 chr6 19720772 19721020 -162694222 - L1PB1 LINE L1 -4 6147 5900 844 77 0 0 chr6 19721020 19721124 -162694118 - U6 snRNA snRNA -2 105 2 2277 110 3 3 chr6 19721769 19722078 -162693164 - AluSc SINE Alu 0 309 1 884 118 0 40 chr6 19722778 19723031 -162692211 + (TTCC)n Simple_repeat Simple_repeat 1 242 0 1627 193 24 10 chr6 19723045 19723341 -162691901 - AluJb SINE Alu -10 302 3 2412 109 35 11 chr6 19723454 19723830 -162691412 + L1MA5 LINE L1 5659 6043 -257 845 163 0 7 chr6 19723833 19723968 -162691274 + AluJb SINE Alu 1 134 -178 3448 108 10 29 chr6 19723975 19724495 -162690747 - MER9 LTR ERVK 0 511 2 1035 75 38 113 chr6 19724506 19724614 -162690628 + L1MA5 LINE L1 6028 6114 -186 2147 147 0 3 chr6 19724614 19724927 -162690315 + AluSx SINE Alu 1 312 0 1035 75 38 113 chr6 19724927 19725030 -162690212 + L1MA5 LINE L1 6114 6223 -77 23 68 0 0 chr6 19725030 19725074 -162690168 + AT_rich Low_complexity Low_complexity 1 44 0 270 153 68 0 chr6 19725096 19725155 -162690087 + L1MA5A LINE L1 6235 6297 0 2577 74 0 0 chr6 19725505 19725815 -162689427 + AluY SINE Alu 1 310 -1 266 365 22 17 chr6 19725875 19726056 -162689186 + MIR3 SINE MIR 24 205 -3 327 325 34 39 chr6 19726486 19726692 -162688550 + L2 LINE L2 2682 2886 -428 2294 110 0 0 chr6 19726897 19727188 -162688054 - AluSg SINE Alu -17 293 3 2325 110 0 0 chr6 19727388 19727689 -162687553 - AluSg SINE Alu -3 307 7 2222 91 3 17 chr6 19727699 19727995 -162687247 - AluSq SINE Alu -20 293 2 2058 122 37 0 chr6 19728995 19729289 -162685953 - AluSx SINE Alu -7 305 1 32 26 0 0 chr6 19729320 19729359 -162685883 + AT_rich Low_complexity Low_complexity 1 39 0 422 261 58 27 chr6 19729538 19729742 -162685500 + LTR16C LTR ERVL 1 277 -214 329 245 170 0 chr6 19729780 19729886 -162685356 + LTR16C LTR ERVL 337 460 -31 1259 115 5 35 chr6 19729963 19730163 -162685079 - L1PB2 LINE L1 -1 6150 5957 2034 151 0 0 chr6 19730172 19730476 -162684766 - AluSx SINE Alu -8 304 1 2113 114 11 0 chr6 19730722 19731003 -162684239 + AluJo SINE Alu 10 293 -19 2141 105 21 3 chr6 19731003 19731289 -162683953 + AluSc SINE Alu 1 291 -18 2718 139 83 28 chr6 19731656 19732204 -162683038 - LTR24B LTR ERV1 -6 570 1 2345 71 3 20 chr6 19732307 19732624 -162682618 - AluY SINE Alu 0 311 1 225 274 179 0 chr6 19732783 19732889 -162682353 + MIR SINE MIR 132 256 -6 2138 138 0 0 chr6 19732890 19733194 -162682048 - AluSx SINE Alu -4 308 5 22 94 0 0 chr6 19733262 19733326 -162681916 + AT_rich Low_complexity Low_complexity 1 64 0 2319 87 0 16 chr6 19733406 19733718 -162681524 - AluSp SINE Alu -4 309 3 2343 86 3 0 chr6 19733865 19734157 -162681085 - AluSp SINE Alu -20 293 1 2081 162 0 0 chr6 19734222 19734525 -162680717 - AluSx SINE Alu -9 303 1 1588 238 123 23 chr6 19734625 19735192 -162680050 + MER114 LTR ERV 25 648 0 2504 51 10 3 chr6 19735562 19735858 -162679384 - AluY SINE Alu -13 298 1 2183 99 0 18 chr6 19735895 19736177 -162679065 - AluSg SINE Alu -31 279 3 1694 179 0 45 chr6 19736659 19736971 -162678271 - AluJo SINE Alu -14 298 1 2185 105 0 26 chr6 19737005 19737310 -162677932 + AluSx SINE Alu 14 310 -2 666 198 9 0 chr6 19737507 19737623 -162677619 - FLAM_C SINE Alu -25 118 2 376 285 44 25 chr6 19738745 19738903 -162676339 - MIR SINE MIR -18 244 84 1627 135 128 6 chr6 19739601 19739701 -162675541 - L1MB3 LINE L1 -1 6182 6096 1886 166 10 3 chr6 19739701 19739997 -162675245 - AluJo SINE Alu -14 298 1 1627 135 128 6 chr6 19739997 19740215 -162675027 - L1MB3 LINE L1 -87 6096 5825 2565 59 0 0 chr6 19740730 19741033 -162674209 - AluY SINE Alu -8 303 1 2767 173 44 4 chr6 19741041 19741520 -162673722 + MER54B LTR ERVL 1 498 -295 565 110 20 0 chr6 19741520 19741620 -162673622 + (GA)n Simple_repeat Simple_repeat 2 103 0 1080 197 5 5 chr6 19741620 19741823 -162673419 + MER54B LTR ERVL 491 693 -100 1312 170 4 18 chr6 19743172 19743401 -162671841 - AluJb SINE Alu -86 226 1 1332 115 161 14 chr6 19743423 19743641 -162671601 + AluSg1 SINE Alu 49 298 -11 195 250 73 0 chr6 19743672 19743740 -162671502 + L3 LINE CR1 1380 1452 -125 22 0 0 0 chr6 19743886 19743908 -162671334 + AT_rich Low_complexity Low_complexity 1 22 0 890 90 0 0 chr6 19744763 19744874 -162670368 + AluSp/q SINE Alu 186 296 -17 4146 124 47 11 chr6 19745212 19745338 -162669904 + L1PB3 LINE L1 5462 5582 -572 2601 59 0 0 chr6 19745338 19745641 -162669601 - AluY SINE Alu -8 303 1 4146 124 47 11 chr6 19745641 19745844 -162669398 + L1PB3 LINE L1 5582 5776 -378 396 0 0 0 chr6 19745844 19745888 -162669354 + (CA)n Simple_repeat Simple_repeat 2 45 0 4146 124 47 11 chr6 19745888 19746224 -162669018 + L1PB3 LINE L1 5776 6152 -2 1856 151 7 30 chr6 19747279 19747583 -162667659 + AluJo SINE Alu 1 297 -15 335 250 61 15 chr6 19747682 19747814 -162667428 + MER97b DNA MER1_type? 916 1053 0 1726 163 10 23 chr6 19748433 19748734 -162666508 + AluJo SINE Alu 5 301 -11 265 253 105 11 chr6 19749371 19749466 -162665776 + MIR SINE MIR 50 153 -109 2333 102 0 16 chr6 19749487 19749802 -162665440 - AluSx SINE Alu -2 310 1 201 267 133 0 chr6 19750645 19750705 -162664537 + MIR3 SINE MIR 98 165 -43 1728 104 5 0 chr6 19751029 19751249 -162663993 + AluSx SINE Alu 1 221 -91 210 37 0 0 chr6 19751265 19751292 -162663950 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1200 172 18 35 chr6 19751323 19751550 -162663692 - AluJo SINE Alu -8 304 82 1035 230 96 5 chr6 19751983 19752277 -162662965 - MER57A LTR ERV1 0 403 117 2354 113 0 0 chr6 19752386 19752696 -162662546 - AluSx SINE Alu -2 310 1 249 254 159 16 chr6 19752907 19753033 -162662209 - L2 LINE L2 -1 3312 3169 23 0 0 0 chr6 19753705 19753728 -162661514 + AT_rich Low_complexity Low_complexity 1 23 0 2046 137 27 0 chr6 19754148 19754448 -162660794 + AluSx SINE Alu 1 308 -4 1870 171 30 18 chr6 19754450 19754784 -162660458 + MLT1A1 LTR MaLR 27 364 -1 189 275 0 88 chr6 19755655 19755746 -162659496 + MIR SINE MIR 166 248 -14 387 0 0 0 chr6 19755782 19755825 -162659417 + (TG)n Simple_repeat Simple_repeat 2 44 0 498 278 20 68 chr6 19755883 19756135 -162659107 + MIR SINE MIR 6 245 -17 404 234 40 16 chr6 19756408 19756532 -162658710 + MER5A DNA MER1_type 21 147 -42 341 200 12 147 chr6 19756560 19756730 -162658512 - MER5B DNA MER1_type -30 148 2 227 333 13 0 chr6 19756856 19756931 -162658311 + MER5A DNA MER1_type 112 187 -2 2130 120 3 3 chr6 19757048 19757339 -162657903 + AluSx SINE Alu 1 291 -21 467 173 0 0 chr6 19757791 19757872 -162657370 + MER5A DNA MER1_type 10 90 -99 1558 174 44 20 chr6 19758359 19758657 -162656585 + AluJo SINE Alu 1 305 -7 646 178 31 16 chr6 19758682 19758811 -162656431 - L1MC1 LINE L1 -1 6332 6202 309 194 0 0 chr6 19758915 19758977 -162656265 - LTR5 LTR ERVK -153 816 755 1395 164 35 28 chr6 19758977 19759264 -162655978 - L1MC3 LINE L1 -202 7583 7295 727 142 0 0 chr6 19759266 19759372 -162655870 - MLT1B LTR MaLR -284 106 1 1584 149 90 28 chr6 19759444 19759733 -162655509 - AluJo SINE Alu -5 307 1 2237 116 0 0 chr6 19760539 19760842 -162654400 - AluSx SINE Alu -9 303 1 584 260 173 63 chr6 19760857 19761192 -162654050 + MLT1J LTR MaLR 1 372 -139 1701 184 3 20 chr6 19761253 19761558 -162653684 - AluJo SINE Alu -12 300 1 2492 66 3 0 chr6 19761606 19761907 -162653335 - AluY SINE Alu -9 302 1 545 219 206 20 chr6 19763512 19763658 -162651584 - MER21B LTR ERV1 -690 173 1 513 349 82 28 chr6 19763982 19764362 -162650880 + L2 LINE L2 1702 2133 -1181 1494 168 78 4 chr6 19764362 19764630 -162650612 + AluJo SINE Alu 1 288 -24 513 349 82 28 chr6 19764630 19764893 -162650349 + L2 LINE L2 2133 2380 -934 229 334 154 31 chr6 19765036 19765419 -162649823 + L2 LINE L2 2542 2971 -343 227 180 0 20 chr6 19765471 19765521 -162649721 + MER5B DNA MER1_type 1 49 -129 217 195 24 10 chr6 19765571 19765662 -162649580 - MER5A DNA MER1_type -19 170 1 372 260 0 19 chr6 19765810 19765914 -162649328 + L2 LINE L2 3171 3272 0 208 231 19 0 chr6 19766256 19766308 -162648934 + (TG)n Simple_repeat Simple_repeat 2 54 0 1425 199 14 11 chr6 19766449 19766735 -162648507 - AluJo SINE Alu -6 306 20 37453 60 3 2 chr6 19767826 19773377 -162641865 - L1PA5 LINE L1 0 6154 597 1012 153 0 69 chr6 19773906 19774095 -162641147 - AluJ SINE Alu -15 297 122 299 200 0 12 chr6 19774096 19774176 -162641066 + CT-rich Low_complexity Low_complexity 1 79 0 789 150 39 0 chr6 19774176 19774303 -162640939 - AluJ SINE Alu -169 133 2 1944 151 3 19 chr6 19775711 19776022 -162639220 - AluJb SINE Alu 0 312 7 1453 103 84 5 chr6 19776703 19776916 -162638326 + MER30 DNA MER1_type 1 230 0 460 220 56 13 chr6 19776946 19777104 -162638138 + MIR SINE MIR 50 215 -47 27 0 0 0 chr6 19777198 19777225 -162638017 + AT_rich Low_complexity Low_complexity 1 27 0 2384 124 28 3 chr6 19779518 19779873 -162635369 + THE1B LTR MaLR 1 364 0 2351 104 13 0 chr6 19781099 19781408 -162633834 - AluSp SINE Alu 0 313 1 189 171 0 0 chr6 19782727 19782762 -162632480 + (CTG)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr6 19782763 19782784 -162632458 + AT_rich Low_complexity Low_complexity 1 21 0 566 114 11 23 chr6 19783651 19783739 -162631503 - FLAM_A SINE Alu -20 122 36 34 0 0 0 chr6 19783746 19783780 -162631462 + AT_rich Low_complexity Low_complexity 1 34 0 302 286 217 43 chr6 19783824 19784128 -162631114 + L2 LINE L2 2915 3271 -1 806 170 0 15 chr6 19784622 19784757 -162630485 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 19785025 19785046 -162630196 + AT_rich Low_complexity Low_complexity 1 21 0 259 238 0 88 chr6 19785054 19785134 -162630108 + MIR SINE MIR 175 247 -15 1826 93 0 4 chr6 19785421 19785657 -162629585 + AluSq SINE Alu 1 235 -78 254 299 43 43 chr6 19786245 19786479 -162628763 + L1M4 LINE L1 2795 3028 -3118 1614 59 5 55 chr6 19786744 19786963 -162628279 + AluY SINE Alu 86 293 -18 2368 88 0 0 chr6 19786963 19787259 -162627983 + AluY SINE Alu 1 296 -15 739 218 0 0 chr6 19788333 19788466 -162626776 - FLAM_C SINE Alu 0 133 1 2075 108 0 0 chr6 19788471 19788749 -162626493 - AluSg1 SINE Alu 0 309 32 329 214 70 5 chr6 19789497 19789594 -162625648 - MER5A DNA MER1_type -15 163 53 1663 160 3 33 chr6 19789606 19789906 -162625336 + AluJb SINE Alu 1 291 -21 1212 113 15 10 chr6 19790023 19790218 -162625024 - Tigger2a DNA MER2_type -238 196 1 1290 78 48 0 chr6 19790238 19790404 -162624838 - AluSg/x SINE Alu -5 307 134 359 232 80 8 chr6 19790415 19790540 -162624702 - MER114 LTR ERV -514 134 1 1570 175 0 77 chr6 19790606 19790932 -162624310 + AluJo SINE Alu 1 301 -11 224 154 19 0 chr6 19791049 19791101 -162624141 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 252 65 0 0 chr6 19791105 19791151 -162624091 + LTR66 LTR ERVL 394 439 -171 1987 135 0 0 chr6 19791157 19791445 -162623797 - AluSx SINE Alu -20 292 5 24 53 0 0 chr6 19791454 19791492 -162623750 + AT_rich Low_complexity Low_complexity 1 38 0 1206 174 178 12 chr6 19791492 19791739 -162623503 + AluJo SINE Alu 1 288 -24 269 191 29 15 chr6 19791858 19791926 -162623316 - MER94 DNA DNA -64 70 2 289 302 53 45 chr6 19792038 19792412 -162622830 + L1M4 LINE L1 3778 4154 -1992 365 313 93 65 chr6 19792792 19793388 -162621854 + L1M4 LINE L1 4741 5358 -788 432 0 0 0 chr6 19793388 19793436 -162621806 + (TG)n Simple_repeat Simple_repeat 2 49 0 365 313 93 65 chr6 19793436 19793475 -162621767 + L1M4 LINE L1 5358 5394 -752 2388 105 0 0 chr6 19795341 19795646 -162619596 - AluSc SINE Alu -4 305 1 2131 125 7 7 chr6 19796393 19796690 -162618552 - AluSx SINE Alu -15 297 1 506 121 0 0 chr6 19796690 19796756 -162618486 - AluS SINE Alu -227 86 21 21 0 0 0 chr6 19796873 19796894 -162618348 + AT_rich Low_complexity Low_complexity 1 21 0 1600 165 27 27 chr6 19796897 19797194 -162618048 - AluJo SINE Alu -15 297 1 290 258 0 0 chr6 19797378 19797440 -162617802 - MER91 DNA MER1_type 0 140 79 429 312 62 11 chr6 19797499 19797688 -162617554 - MIR SINE MIR -32 230 35 189 274 228 35 chr6 19797712 19797909 -162617333 + L2 LINE L2 2176 2410 -904 2150 115 123 52 chr6 19797955 19798355 -162616887 + MSTA LTR MaLR 1 428 0 2310 148 63 22 chr6 19798613 19799024 -162616218 + MSTA LTR MaLR 1 428 0 259 333 116 22 chr6 19799174 19799312 -162615930 + L2 LINE L2 3118 3268 -4 239 319 76 35 chr6 19799835 19799906 -162615336 + MIR3 SINE MIR 45 112 -96 2451 91 0 3 chr6 19799906 19800214 -162615028 - AluSq SINE Alu -6 307 1 239 319 76 35 chr6 19800214 19800286 -162614956 + MIR3 SINE MIR 112 194 -14 204 324 95 0 chr6 19804042 19804116 -162611126 - L2 LINE L2 -22 3250 3170 21 57 0 0 chr6 19804289 19804324 -162610918 + AT_rich Low_complexity Low_complexity 1 35 0 2334 65 0 3 chr6 19805629 19805920 -162609322 + AluY SINE Alu 1 290 -21 2138 70 13 47 chr6 19805960 19806261 -162608981 + AluY SINE Alu 1 291 -20 1978 65 4 4 chr6 19806935 19807180 -162608062 + AluY SINE Alu 54 298 -13 2140 116 0 29 chr6 19808361 19808671 -162606571 + AluSg SINE Alu 1 301 -9 332 290 40 24 chr6 19811848 19811972 -162603270 + MIR SINE MIR 24 149 -113 283 114 0 0 chr6 19811973 19812017 -162603225 - L1MB4 LINE L1 -124 6056 6013 733 169 0 0 chr6 19812041 19812165 -162603077 + FRAM SINE Alu 36 159 -17 2303 126 59 0 chr6 19812171 19812406 -162602836 - L1MB2 LINE L1 -153 6018 5748 1971 115 15 78 chr6 19812406 19812737 -162602505 - AluSx SINE Alu -2 310 1 2303 126 59 0 chr6 19812737 19812905 -162602337 - L1MB2 LINE L1 -423 5748 5591 1136 153 121 7 chr6 19813004 19813286 -162601956 - L1MA9 LINE L1 -9 6303 5990 2461 60 0 7 chr6 19814033 19814333 -162600909 + AluY SINE Alu 1 298 -13 453 225 14 67 chr6 19814712 19814936 -162600306 - L2 LINE L2 -1 3312 3017 413 235 20 0 chr6 19815994 19816096 -162599146 - U13 snRNA snRNA 0 104 1 376 240 42 10 chr6 19816232 19816328 -162598914 + MIR SINE MIR 55 153 -55 354 211 60 96 chr6 19816527 19816693 -162598549 - MER103 DNA DNA -1 165 6 2175 144 87 41 chr6 19817716 19818152 -162597090 - MSTB2 LTR MaLR -1 456 1 462 300 18 59 chr6 19818318 19818488 -162596754 + MIR SINE MIR 2 164 -98 2191 101 0 10 chr6 19819185 19819518 -162595724 - AluSg SINE Alu 0 310 1 247 282 51 0 chr6 19819955 19820033 -162595209 - L3 LINE CR1 -1 1576 1495 1087 277 108 2 chr6 19820093 19820501 -162594741 - L2 LINE L2 -1 3312 2856 396 0 0 0 chr6 19820501 19820545 -162594697 + (TG)n Simple_repeat Simple_repeat 2 45 0 1087 277 108 2 chr6 19820545 19820562 -162594680 - L2 LINE L2 -457 2856 2842 1530 145 167 38 chr6 19820562 19820844 -162594398 - MLT2B1 LTR ERVL -94 426 83 1775 122 134 15 chr6 19820844 19821179 -162594063 - THE1C LTR MaLR 0 375 1 1530 145 167 38 chr6 19821179 19821268 -162593974 - MLT2B1 LTR ERVL -437 83 7 507 209 18 18 chr6 19821272 19821382 -162593860 - L2 LINE L2 -633 2681 2572 239 304 43 9 chr6 19821411 19821526 -162593716 + MIR SINE MIR 120 238 -24 261 369 45 25 chr6 19821550 19821748 -162593494 - L3 LINE CR1 -99 1478 1277 267 300 146 0 chr6 19821891 19822001 -162593241 + MIR3 SINE MIR 34 159 -49 2203 132 3 0 chr6 19822018 19822328 -162592914 - AluSq SINE Alu -2 311 1 183 268 0 0 chr6 19822367 19822408 -162592834 - L3 LINE CR1 -351 1226 1186 334 325 16 47 chr6 19822645 19822836 -162592406 + LTR16A LTR ERVL 181 365 -85 1985 136 51 0 chr6 19823152 19823447 -162591795 + AluSx SINE Alu 1 310 -2 2124 126 3 3 chr6 19823605 19823914 -162591328 - AluSq SINE Alu -4 309 1 199 293 89 70 chr6 19824456 19824715 -162590527 - L2 LINE L2 -198 3074 2811 2373 104 0 0 chr6 19825017 19825324 -162589918 - AluSc SINE Alu 0 309 3 324 0 0 0 chr6 19825506 19825542 -162589700 + (TA)n Simple_repeat Simple_repeat 2 37 0 2192 112 34 0 chr6 19825542 19825837 -162589405 - AluSx SINE Alu -7 305 1 471 282 90 29 chr6 19825993 19826382 -162588860 - L1ME LINE L1 -302 5819 5401 193 145 118 158 chr6 19827072 19827148 -162588094 - MIR SINE MIR -103 159 87 21 82 0 0 chr6 19828649 19828698 -162586544 + AT_rich Low_complexity Low_complexity 1 49 0 1137 179 153 58 chr6 19828946 19829259 -162585983 + MER2 DNA MER2_type 2 344 0 961 200 88 117 chr6 19829282 19829657 -162585585 - MLT1A1 LTR MaLR 0 365 2 263 224 35 0 chr6 19830886 19830944 -162584298 - MER5B DNA MER1_type -1 177 118 4121 176 45 27 chr6 19830949 19832783 -162582459 + L1MB8 LINE L1 4282 6161 -17 28 48 0 0 chr6 19832821 19832863 -162582379 + AT_rich Low_complexity Low_complexity 1 42 0 555 290 0 0 chr6 19832873 19833004 -162582238 - MER5B DNA MER1_type -47 131 1 389 303 133 6 chr6 19833014 19833179 -162582063 + MER5A DNA MER1_type 4 189 0 617 295 137 19 chr6 19833460 19834034 -162581208 - L2 LINE L2 -1123 2191 1539 1449 135 0 41 chr6 19834137 19834381 -162580861 - MER46A DNA MER2_type 0 236 3 277 324 48 69 chr6 19834420 19834565 -162580677 - L2 LINE L2 -24 3248 3107 1836 169 10 0 chr6 19835016 19835306 -162579936 + AluSx SINE Alu 1 293 -19 387 0 0 0 chr6 19835317 19835360 -162579882 + (CA)n Simple_repeat Simple_repeat 2 44 0 1515 157 56 21 chr6 19836723 19837010 -162578232 + AluJo SINE Alu 1 297 -15 269 239 84 0 chr6 19837243 19837314 -162577928 - MIR SINE MIR -98 164 88 240 222 0 19 chr6 19837680 19837734 -162577508 - L3 LINE CR1 -1 1576 1524 267 79 0 0 chr6 19839080 19839118 -162576124 + (TG)n Simple_repeat Simple_repeat 2 39 0 269 261 99 70 chr6 19839120 19839262 -162575980 - MIR SINE MIR -89 173 28 345 239 65 19 chr6 19839766 19839921 -162575321 - L1ME4a LINE L1 -249 5872 5711 291 218 0 77 chr6 19840661 19840831 -162574411 + T-rich Low_complexity Low_complexity 4 160 0 2095 109 89 9 chr6 19842010 19842357 -162572885 + THE1C LTR MaLR 1 375 0 189 195 98 0 chr6 19842700 19842741 -162572501 - L2 LINE L2 -5 3267 3223 * 518 259 74 65 chr6 19842717 19842933 -162572309 - MIR SINE MIR -20 242 25 1786 171 0 27 chr6 19842953 19843251 -162571991 + AluJo SINE Alu 1 290 -22 213 314 39 0 chr6 19843321 19843423 -162571819 + (TATATG)n Simple_repeat Simple_repeat 6 111 0 223 286 81 87 chr6 19843875 19844036 -162571206 - L2 LINE L2 -36 3236 3077 866 213 45 15 chr6 19844156 19844358 -162570884 - MER3 DNA MER1_type 0 209 2 1456 178 86 27 chr6 19844504 19844527 -162570715 - AluJo SINE Alu -3 309 289 195 42 0 0 chr6 19844527 19844551 -162570691 + (TC)n Simple_repeat Simple_repeat 2 25 0 1456 178 86 27 chr6 19844551 19844819 -162570423 - AluJo SINE Alu -23 289 1 1889 122 58 3 chr6 19845004 19845299 -162569943 + AluY SINE Alu 1 311 0 1685 169 68 12 chr6 19846000 19846325 -162568917 - MER2 DNA MER2_type 0 344 2 2428 85 0 0 chr6 19848658 19848964 -162566278 - AluY SINE Alu -5 306 1 2353 214 66 49 chr6 19849381 19849722 -162565520 + L1MC4a LINE L1 6928 7262 -733 3025 23 0 0 chr6 19849722 19850071 -162565171 + L1PA4 LINE L1 5799 6147 -8 2353 214 66 49 chr6 19850071 19850615 -162564627 + L1MC4a LINE L1 7262 7951 -44 187 324 67 29 chr6 19850802 19850907 -162564335 - MIR SINE MIR -70 192 84 249 295 93 23 chr6 19851069 19851198 -162564044 + L2 LINE L2 3173 3310 -3 1689 188 3 14 chr6 19851199 19851491 -162563751 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr6 19851763 19851791 -162563451 + AT_rich Low_complexity Low_complexity 1 28 0 745 219 30 12 chr6 19855724 19855893 -162559349 + MIR SINE MIR 41 212 -50 312 236 42 14 chr6 19856457 19856529 -162558713 - MIR SINE MIR -108 154 81 2414 175 68 11 chr6 19856580 19857152 -162558090 - L1MB4 LINE L1 -1 6179 5575 24 0 0 0 chr6 19857159 19857183 -162558059 + AT_rich Low_complexity Low_complexity 1 24 0 201 304 36 0 chr6 19857221 19857277 -162557965 - MIR3 SINE MIR -39 169 112 2170 120 7 0 chr6 19857296 19857604 -162557638 - AluSx SINE Alu -2 310 1 266 290 113 21 chr6 19858029 19858215 -162557027 - L3 LINE CR1 -741 836 634 570 232 49 0 chr6 19860708 19860850 -162554392 + MER20 DNA MER1_type 1 149 -70 407 35 18 0 chr6 19860884 19860941 -162554301 + (TG)n Simple_repeat Simple_repeat 2 59 0 281 227 45 0 chr6 19860958 19861024 -162554218 + MER20 DNA MER1_type 150 218 -1 1604 264 283 21 chr6 19861037 19862185 -162553057 - L2 LINE L2 -63 3250 2404 216 0 0 0 chr6 19862185 19862209 -162553033 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1604 264 283 21 chr6 19862209 19862537 -162552705 - L2 LINE L2 -909 2404 1325 244 203 0 51 chr6 19862614 19862673 -162552569 - L2 LINE L2 0 3313 3258 349 225 181 19 chr6 19862685 19862732 -162552510 + MER112 DNA MER1_type 23 61 -199 261 0 0 0 chr6 19862732 19862761 -162552481 + (CA)n Simple_repeat Simple_repeat 1 29 0 349 225 181 19 chr6 19862761 19862873 -162552369 + MER112 DNA MER1_type 61 208 -52 188 313 0 0 chr6 19862996 19863044 -162552198 - L2 LINE L2 -27 3245 3198 728 140 86 50 chr6 19863683 19863905 -162551337 - L1MA8 LINE L1 -2 6289 6060 666 198 25 64 chr6 19864320 19864348 -162550894 + MER63A DNA MER1_type 50 78 -1610 2158 102 3 7 chr6 19864348 19864642 -162550600 - AluSx SINE Alu -19 293 1 666 198 25 64 chr6 19864642 19864770 -162550472 + MER63A DNA MER1_type 78 200 -10 182 254 189 49 chr6 19865237 19865359 -162549883 + L2 LINE L2 3134 3272 0 1670 188 0 7 chr6 19866827 19867130 -162548112 - AluJb SINE Alu -11 301 1 2382 93 3 0 chr6 19867181 19867481 -162547761 - AluSx SINE Alu -11 301 1 310 285 65 49 chr6 19867495 19867618 -162547624 - L1MC4a LINE L1 -1922 5886 5762 187 283 0 0 chr6 19867766 19867812 -162547430 - L3 LINE CR1 -2 1575 1530 638 273 95 65 chr6 19867914 19868313 -162546929 - MLT1L LTR MaLR -4 611 201 203 267 30 79 chr6 19868451 19868552 -162546690 - L3 LINE CR1 -196 1381 1286 2478 78 0 0 chr6 19869956 19870265 -162544977 - AluY SINE Alu -2 309 1 2034 117 7 7 chr6 19870822 19871112 -162544130 + AluSx SINE Alu 1 290 -22 2155 114 0 0 chr6 19871973 19872279 -162542963 - AluSx SINE Alu 0 308 3 286 303 34 42 chr6 19872652 19872755 -162542487 + MIR SINE MIR 50 153 -109 1299 159 26 9 chr6 19872755 19872987 -162542255 - MER46A DNA MER2_type 0 236 1 286 303 34 42 chr6 19872987 19873002 -162542240 + MIR SINE MIR 153 167 -95 2268 178 55 34 chr6 19874072 19874566 -162540676 - MLT1D LTR MaLR 0 505 2 227 200 18 0 chr6 19874629 19874684 -162540558 + CT-rich Low_complexity Low_complexity 2 57 0 326 329 175 31 chr6 19876053 19876607 -162538635 + L2 LINE L2 1603 2236 -1078 22 35 0 0 chr6 19877100 19877129 -162538113 + AT_rich Low_complexity Low_complexity 1 29 0 2509 110 22 0 chr6 19877763 19878119 -162537123 - THE1B LTR MaLR 0 364 1 25 51 0 0 chr6 19878215 19878254 -162536988 + AT_rich Low_complexity Low_complexity 1 39 0 1568 208 30 33 chr6 19878528 19878893 -162536349 - MLT1A2 LTR MaLR -10 364 1 183 42 0 0 chr6 19881439 19881463 -162533779 + (T)n Simple_repeat Simple_repeat 1 24 0 1851 168 3 0 chr6 19881685 19881983 -162533259 - AluJo SINE Alu -12 300 2 2002 84 3 116 chr6 19883096 19883431 -162531811 + AluSp SINE Alu 1 297 -6 189 211 211 0 chr6 19883603 19883660 -162531582 + MIR3 SINE MIR 133 201 -7 2084 123 7 7 chr6 19885813 19886114 -162529128 - AluSx SINE Alu -11 301 1 357 274 34 75 chr6 19886454 19886600 -162528642 - MIR SINE MIR -74 188 49 838 170 27 67 chr6 19886651 19886761 -162528481 - MLT1E3 LTR MaLR -43 581 468 2344 91 3 0 chr6 19886761 19887057 -162528185 + AluSc SINE Alu 1 297 -12 838 170 27 67 chr6 19887057 19887251 -162527991 - MLT1E3 LTR MaLR -156 468 208 272 283 98 0 chr6 19887917 19888009 -162527233 + MIR3 SINE MIR 93 193 -15 2476 71 0 3 chr6 19888759 19889067 -162526175 + AluY SINE Alu 5 311 0 22 80 0 0 chr6 19889337 19889387 -162525855 + AT_rich Low_complexity Low_complexity 1 50 0 848 199 6 0 chr6 19889418 19889574 -162525668 - FRAM SINE Alu -19 157 1 1932 144 7 16 chr6 19889578 19889883 -162525359 - AluJb SINE Alu -10 302 1 2294 115 0 6 chr6 19889931 19890243 -162524999 - AluSx SINE Alu -2 310 1 291 321 18 72 chr6 19890775 19890822 -162524420 - L2 LINE L2 -552 2762 2714 2012 141 0 7 chr6 19890822 19891121 -162524121 + AluJb SINE Alu 6 302 -10 291 321 18 72 chr6 19891121 19891294 -162523948 - L2 LINE L2 -600 2714 2554 495 0 0 0 chr6 19892444 19892499 -162522743 + (TA)n Simple_repeat Simple_repeat 2 56 0 421 301 97 5 chr6 19892650 19892885 -162522357 - L1 LINE L1 -2860 3286 3028 241 235 131 99 chr6 19893500 19893721 -162521521 - HAL1 LINE L1 -111 2396 2169 1454 158 18 94 chr6 19894015 19894284 -162520958 + L1MC1 LINE L1 6030 6271 -62 2277 138 40 11 chr6 19894284 19894638 -162520604 + THE1B LTR MaLR 1 364 0 1454 158 18 94 chr6 19894638 19894697 -162520545 + L1MC1 LINE L1 6271 6333 0 441 246 42 28 chr6 19894714 19894856 -162520386 + MIR SINE MIR 5 148 -114 197 289 0 0 chr6 19894869 19894914 -162520328 + L2 LINE L2 3217 3261 -11 2087 132 3 0 chr6 19894951 19895254 -162519988 - AluSx SINE Alu -8 304 1 1645 139 114 7 chr6 19895634 19895907 -162519335 - AluSg1 SINE Alu -7 302 1 189 0 0 0 chr6 19895995 19896016 -162519226 + (T)n Simple_repeat Simple_repeat 1 21 0 1085 286 208 33 chr6 19896101 19897089 -162518153 - HAL1 LINE L1 -604 1903 744 261 0 0 0 chr6 19897225 19897254 -162517988 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1823 118 20 104 chr6 19897811 19898158 -162517084 - AluYb8 SINE Alu 0 318 1 242 261 101 0 chr6 19898291 19898360 -162516882 - L1MC2 LINE L1 -57 6287 6212 1719 251 100 69 chr6 19899019 19899768 -162515474 - LTR41 LTR ERVL -1 772 1 427 276 17 9 chr6 19901010 19901126 -162514116 + L2 LINE L2 3197 3313 0 207 344 57 45 chr6 19902501 19902745 -162512497 - MIR SINE MIR -3 259 13 330 26 0 0 chr6 19902962 19903001 -162512241 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 1133 243 9 0 chr6 19903422 19903644 -162511598 - MER58A DNA MER1_type 0 224 1 217 269 0 39 chr6 19903666 19903718 -162511524 + L2 LINE L2 3246 3295 -18 606 297 24 19 chr6 19904027 19904239 -162511003 - MLT1K LTR MaLR 0 588 376 221 329 148 33 chr6 19904460 19904819 -162510423 - L2 LINE L2 -337 2977 2578 2121 101 0 37 chr6 19906120 19906449 -162508793 + AluSq SINE Alu 1 318 0 279 323 31 31 chr6 19906544 19906674 -162508568 - L2 LINE L2 -9 3263 3134 404 253 107 20 chr6 19907627 19907777 -162507465 - MIR SINE MIR -11 251 89 288 200 15 15 chr6 19907970 19908035 -162507207 + MER112 DNA MER1_type 5 69 -191 278 314 42 42 chr6 19909182 19909300 -162505942 - L2 LINE L2 -14 3258 3141 1409 159 131 68 chr6 19909662 19910014 -162505228 - MLT1A2 LTR MaLR 0 374 1 323 325 123 0 chr6 19910982 19911136 -162504106 - MIR3 SINE MIR -5 203 31 215 326 65 11 chr6 19911754 19911846 -162503396 + MIR SINE MIR 31 127 -81 1774 141 11 0 chr6 19911864 19912127 -162503115 - AluSg SINE Alu -44 266 1 181 247 35 82 chr6 19912130 19912215 -162503027 + MIR3 SINE MIR 119 199 -9 558 29 0 0 chr6 19912864 19912932 -162502310 + (CA)n Simple_repeat Simple_repeat 2 69 0 469 106 0 59 chr6 19912934 19913019 -162502223 - AluJo SINE Alu -3 309 230 1034 119 0 50 chr6 19913024 19913183 -162502059 - AluJo SINE Alu -161 151 1 572 280 19 6 chr6 19913824 19913981 -162501261 - MER5B DNA MER1_type -13 165 7 206 236 67 90 chr6 19914247 19914336 -162500906 + MIR SINE MIR 120 206 -56 233 245 0 0 chr6 19914422 19914475 -162500767 + (TA)n Simple_repeat Simple_repeat 1 53 0 191 242 23 8 chr6 19914491 19914623 -162500619 + (TA)n Simple_repeat Simple_repeat 1 134 0 2100 189 23 21 chr6 19914989 19915417 -162499825 + MER54A LTR ERVL 473 901 0 2350 92 0 0 chr6 19916749 19917041 -162498201 + AluSx SINE Alu 1 292 -20 212 318 91 27 chr6 19918525 19918635 -162496607 + L2 LINE L2 3144 3260 -12 37 69 0 0 chr6 19919638 19919710 -162495532 + AT_rich Low_complexity Low_complexity 1 72 0 917 207 0 69 chr6 19920745 19920821 -162494421 + MER5A DNA MER1_type 1 81 -108 1557 69 8 69 chr6 19920821 19920952 -162494290 + L1PA10 LINE L1 5939 6050 -118 4557 110 8 15 chr6 19920952 19921568 -162493674 - LTR9 LTR ERV1 0 612 1 1557 69 8 69 chr6 19921568 19921681 -162493561 + L1PA10 LINE L1 6050 6168 0 917 207 0 69 chr6 19921681 19921807 -162493435 + MER5A DNA MER1_type 81 189 0 675 221 29 23 chr6 19922046 19922218 -162493024 + MER46C DNA MER2_type 1 173 -165 575 165 96 0 chr6 19922581 19922724 -162492518 - L1MC3 LINE L1 -167 7828 7441 390 136 0 15 chr6 19922724 19922790 -162492452 - L1MA5 LINE L1 0 6300 6236 2091 127 16 0 chr6 19923046 19923353 -162491889 - AluSx SINE Alu 0 312 1 2288 128 11 16 chr6 19923379 19923755 -162491487 - L1MA5 LINE L1 -61 6239 5866 835 167 39 13 chr6 19923755 19923911 -162491331 - L1MC3 LINE L1 -329 7456 7297 665 296 116 53 chr6 19924068 19924466 -162490776 - MLT1K LTR MaLR -23 565 143 887 297 22 0 chr6 19924662 19924884 -162490358 - MIR SINE MIR -35 227 1 3916 164 46 31 chr6 19924903 19925671 -162489571 + LTR1 LTR ERV1 7 785 0 227 307 20 59 chr6 19925925 19926026 -162489216 + LTR16A LTR ERVL 346 442 -8 322 313 30 15 chr6 19926216 19926347 -162488895 + L2 LINE L2 3009 3141 -172 293 242 48 18 chr6 19926349 19926514 -162488728 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 315 0 0 0 chr6 19926527 19926562 -162488680 + (CA)n Simple_repeat Simple_repeat 1 35 0 475 269 50 0 chr6 19926576 19926695 -162488547 + L2 LINE L2 3188 3312 -1 2172 99 3 0 chr6 19926728 19927040 -162488202 + AluSx SINE Alu 1 313 0 390 297 120 17 chr6 19927250 19927425 -162487817 + MIR SINE MIR 57 249 -13 210 299 65 28 chr6 19927457 19927564 -162487678 + L3 LINE CR1 1462 1572 -5 578 282 20 7 chr6 19927680 19927829 -162487413 + MIR SINE MIR 1 151 -111 2453 91 0 0 chr6 19928013 19928320 -162486922 + AluSc SINE Alu 1 307 -2 21 0 0 0 chr6 19929170 19929191 -162486051 + AT_rich Low_complexity Low_complexity 1 21 0 1106 183 40 5 chr6 19929247 19929449 -162485793 + L1PB4 LINE L1 5946 6154 -2 28 48 0 0 chr6 19930505 19930547 -162484695 + AT_rich Low_complexity Low_complexity 1 42 0 254 115 19 39 chr6 19930815 19930867 -162484375 - L1MA9 LINE L1 0 6312 6262 22 56 0 0 chr6 19930868 19930904 -162484338 + AT_rich Low_complexity Low_complexity 1 36 0 1773 85 29 16 chr6 19930904 19931150 -162484092 - L1PB1 LINE L1 -1 6150 5902 570 238 223 15 chr6 19931151 19931416 -162483826 - L1ME2 LINE L1 -34 6130 5811 1055 103 14 0 chr6 19931443 19931588 -162483654 - AluSg/x SINE Alu -93 219 73 2078 207 148 5 chr6 19931588 19932574 -162482668 - L1ME2 LINE L1 -347 5817 4681 474 238 0 24 chr6 19932579 19932705 -162482537 - L1ME2 LINE L1 -1904 4242 4120 1225 196 31 9 chr6 19933144 19933421 -162481821 + L1ME LINE L1 5328 5609 -512 473 210 0 0 chr6 19933978 19934059 -162481183 - AluJb SINE Alu -189 123 43 25 31 0 0 chr6 19934097 19934129 -162481113 + AT_rich Low_complexity Low_complexity 1 32 0 2143 137 0 3 chr6 19934203 19934510 -162480732 - AluSx SINE Alu -4 308 3 705 254 160 39 chr6 19934521 19935083 -162480159 - L1ME4a LINE L1 -150 5971 5342 399 310 18 0 chr6 19935083 19935196 -162480046 - L2 LINE L2 0 3313 3199 1869 120 53 3 chr6 19935199 19935482 -162479760 - AluSx SINE Alu -15 297 1 396 327 98 43 chr6 19935624 19935951 -162479291 - L1ME4a LINE L1 -1099 5047 4703 232 200 125 25 chr6 19936080 19936200 -162479042 - L1ME4a LINE L1 0 6121 5990 258 193 180 47 chr6 19936298 19936448 -162478794 - L1ME4a LINE L1 -261 5860 5691 2319 119 8 22 chr6 19936593 19936962 -162478280 + THE1B LTR MaLR 1 364 0 2351 82 7 0 chr6 19937010 19937314 -162477928 + AluSp SINE Alu 1 306 -7 975 117 0 48 chr6 19937327 19937472 -162477770 + AluSg SINE Alu 2 139 -171 195 100 0 0 chr6 19937606 19937636 -162477606 + (TG)n Simple_repeat Simple_repeat 1 30 0 2006 61 79 7 chr6 19938069 19938347 -162476895 + AluY SINE Alu 1 298 -13 2005 164 16 16 chr6 19939053 19939419 -162475823 - MER47A DNA MER2_type 0 366 1 837 252 32 5 chr6 19939503 19939721 -162475521 + MER58A DNA MER1_type 1 224 0 438 281 30 55 chr6 19939976 19940140 -162475102 + L2 LINE L2 3134 3293 -20 763 185 0 51 chr6 19940146 19940324 -162474918 - MER104 DNA Tc2 -5 175 7 452 325 25 6 chr6 19942313 19942470 -162472772 + MIR3 SINE MIR 18 177 -31 559 326 85 17 chr6 19942621 19942857 -162472385 - L3 LINE CR1 -3 1574 1323 374 306 189 22 chr6 19942974 19943154 -162472088 - MIR SINE MIR -13 249 40 346 346 9 9 chr6 19943188 19943295 -162471947 - MIR SINE MIR -62 146 40 1071 182 0 0 chr6 19943470 19943640 -162471602 - AluJb SINE Alu -9 303 134 1907 144 11 0 chr6 19943640 19943925 -162471317 - AluSx SINE Alu -11 301 14 289 378 106 0 chr6 19943927 19944115 -162471127 - L3 LINE CR1 -469 1108 901 28 48 0 0 chr6 19944652 19944694 -162470548 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr6 19946221 19946250 -162468992 + AT_rich Low_complexity Low_complexity 1 29 0 992 186 33 0 chr6 19946260 19946443 -162468799 - MER5A DNA MER1_type 0 189 1 260 332 22 90 chr6 19946635 19946903 -162468339 + L2 LINE L2 2948 3197 -75 301 221 97 18 chr6 19947391 19947504 -162467738 + MER103 DNA DNA 11 132 -34 896 158 0 0 chr6 19947521 19947696 -162467546 - FLAM_C SINE Alu 0 175 1 609 120 0 0 chr6 19947913 19948005 -162467237 - AluY SINE Alu -2 309 218 1998 143 31 20 chr6 19948342 19948661 -162466581 - MER46B DNA MER2_type -2495 236 36 2195 143 3 0 chr6 19948661 19948969 -162466273 - AluSx SINE Alu -3 309 1 1998 143 31 20 chr6 19948969 19949006 -162466236 - MER46B DNA MER2_type -2695 36 1 271 288 0 0 chr6 19952127 19952193 -162463049 - L2 LINE L2 -10 3303 3238 1726 151 0 15 chr6 19952196 19952467 -162462775 - AluSx SINE Alu -13 299 33 292 127 0 56 chr6 19952585 19952656 -162462586 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr6 19952755 19952778 -162462464 + AT_rich Low_complexity Low_complexity 1 23 0 674 254 143 37 chr6 19952796 19953146 -162462096 - MLT1J2 LTR MaLR 0 450 64 1885 79 12 4 chr6 19953756 19954009 -162461233 + L1PA10 LINE L1 5905 6159 -9 943 176 0 0 chr6 19954554 19954731 -162460511 - AluJo/FRAM SINE Alu 0 306 130 467 189 0 0 chr6 19954731 19954805 -162460437 - AluJ/FLAM SINE Alu -232 80 7 195 333 0 27 chr6 19955390 19955465 -162459777 - MIR SINE MIR -61 147 75 7821 130 31 26 chr6 19957058 19958462 -162456780 + L1M4c LINE L1 18 1428 -4956 2015 120 0 27 chr6 19958484 19958783 -162456459 + AluY SINE Alu 1 291 -20 6325 85 0 0 chr6 19958784 19959700 -162455542 - L1PA14 LINE L1 -11 6150 5234 784 128 0 128 chr6 19959701 19959896 -162455346 + L1PA14 LINE L1 5077 5246 -900 * 4587 119 34 26 chr6 19959892 19960739 -162454503 + L1M4c LINE L1 1418 2271 -4113 * 13975 34 0 4 chr6 19960737 19962518 -162452724 - L1PA5 LINE L1 -1168 4978 3205 7513 32 2 0 chr6 19962519 19963689 -162451553 + L1PA5 LINE L1 4978 6149 -5 528 113 26 35 chr6 19963689 19963798 -162451444 + L1M4c LINE L1 2264 2371 -4013 1857 162 16 21 chr6 19963804 19964180 -162451062 + L1MB3 LINE L1 5810 6183 0 261 250 62 42 chr6 19964257 19964353 -162450889 + L2 LINE L2 3208 3305 -8 3061 184 22 30 chr6 19964415 19965055 -162450187 + MER82 DNA MER2_type 19 653 0 1406 134 0 13 chr6 19965724 19965963 -162449279 - L1MA9 LINE L1 0 6312 6077 2438 34 24 0 chr6 19966226 19966520 -162448722 - L1PA5 LINE L1 0 6154 5854 3814 35 6 0 chr6 19966520 19967001 -162448241 + L1P2 LINE L1 5300 5783 -371 390 216 46 106 chr6 19967439 19967843 -162447399 + MLT1C LTR MaLR 1 345 -122 190 256 44 100 chr6 19970659 19970819 -162444423 + MIR SINE MIR 56 206 -56 1829 157 27 0 chr6 19971277 19971570 -162443672 + AluSx SINE Alu 3 303 -9 792 291 10 33 chr6 19971791 19971969 -162443273 + LTR16B LTR ERVL 173 354 -110 189 0 0 0 chr6 19971969 19971990 -162443252 + (CAT)n Simple_repeat Simple_repeat 1 21 0 2176 110 3 0 chr6 19971990 19972281 -162442961 - AluSg SINE Alu -18 292 1 792 291 10 33 chr6 19972281 19972400 -162442842 + LTR16B LTR ERVL 352 464 0 229 236 97 28 chr6 19972929 19973001 -162442241 + MIR3 SINE MIR 110 186 -22 597 252 31 83 chr6 19973409 19973663 -162441579 - MER102b DNA MER1_type -1 340 100 1829 180 0 7 chr6 19973677 19973977 -162441265 - AluJo SINE Alu -9 303 6 25 0 0 0 chr6 19973982 19974007 -162441235 + AT_rich Low_complexity Low_complexity 1 25 0 1524 182 19 0 chr6 19974109 19974378 -162440864 + AluJo SINE Alu 39 312 0 490 328 50 0 chr6 19974471 19974651 -162440591 - MIR SINE MIR 0 262 74 316 196 27 18 chr6 19975864 19975976 -162439266 + CT-rich Low_complexity Low_complexity 2 114 0 293 245 117 10 chr6 19976322 19976384 -162438858 + MIR SINE MIR 20 74 -134 1800 142 15 89 chr6 19976384 19976722 -162438520 - AluSq SINE Alu 0 313 1 293 245 117 10 chr6 19976722 19976780 -162438462 + MIR SINE MIR 74 160 -48 1936 173 24 0 chr6 19976858 19977194 -162438048 - MER7A DNA MER2_type -4 342 1 22 0 0 0 chr6 19977306 19977328 -162437914 + AT_rich Low_complexity Low_complexity 1 22 0 510 266 9 0 chr6 19977812 19977921 -162437321 - MER81 DNA DNA -1 113 4 358 262 14 7 chr6 19978174 19978221 -162437021 + (TA)n Simple_repeat Simple_repeat 1 46 -100 2017 88 4 0 chr6 19978221 19978483 -162436759 + AluY SINE Alu 39 301 -10 358 262 14 7 chr6 19978483 19978580 -162436662 + (TA)n Simple_repeat Simple_repeat 46 146 0 198 0 0 0 chr6 19978679 19978701 -162436541 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 681 230 8 4 chr6 19979344 19979600 -162435642 + CT-rich Low_complexity Low_complexity 1 257 0 854 166 12 14 chr6 19979617 19980123 -162435119 + CT-rich Low_complexity Low_complexity 1 505 0 681 197 6 11 chr6 19980137 19980315 -162434927 + CT-rich Low_complexity Low_complexity 4 180 0 376 224 32 115 chr6 19980748 19980904 -162434338 - MIR SINE MIR -59 203 61 497 276 135 20 chr6 19981042 19981495 -162433747 + L1ME LINE L1 5261 5765 -356 1457 114 10 87 chr6 19981557 19981792 -162433450 - L1MA8 LINE L1 -279 6012 5803 1783 123 98 4 chr6 19981792 19982068 -162433174 - AluSx SINE Alu -6 306 5 1457 114 10 87 chr6 19982068 19982131 -162433111 - L1MA8 LINE L1 -488 5803 5737 568 345 102 34 chr6 19982261 19982984 -162432258 - L2 LINE L2 -1771 1543 871 727 174 76 14 chr6 19982984 19983128 -162432114 + FRAM SINE Alu 1 153 -13 1702 174 26 66 chr6 19983138 19983293 -162431949 + MLT1A1 LTR MaLR 1 161 -204 1607 187 53 13 chr6 19983293 19983409 -162431833 + AluJo SINE Alu 1 111 -201 558 67 0 0 chr6 19983409 19983484 -162431758 + (CA)n Simple_repeat Simple_repeat 1 75 0 1607 187 53 13 chr6 19983484 19983667 -162431575 + AluJo SINE Alu 111 312 0 1702 174 26 66 chr6 19983667 19983891 -162431351 + MLT1A1 LTR MaLR 161 365 0 568 345 102 34 chr6 19983891 19984007 -162431235 - L2 LINE L2 -2451 863 635 336 24 0 0 chr6 19984873 19984914 -162430328 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 248 103 34 chr6 19985115 19985232 -162430010 + 7SK RNA RNA 1 125 -68 565 101 0 13 chr6 19985839 19985918 -162429324 - MADE1 DNA Mariner 0 80 3 196 344 39 31 chr6 19986764 19986892 -162428350 + MIR3 SINE MIR 7 135 -73 643 184 18 0 chr6 19987757 19987866 -162427376 - MER81 DNA DNA -1 113 3 1303 83 0 0 chr6 19988104 19988273 -162426969 - L1MA2 LINE L1 0 6304 6136 1739 42 0 0 chr6 19988273 19988466 -162426776 + L1PA3 LINE L1 5960 6152 -3 6348 110 42 4 chr6 19988474 19989846 -162425396 - L1MA1 LINE L1 -170 6132 4697 28 0 0 0 chr6 19990214 19990242 -162425000 + AT_rich Low_complexity Low_complexity 1 28 0 4604 83 7 0 chr6 19990246 19990822 -162424420 - L1PA10 LINE L1 -11 6157 5578 657 306 104 87 chr6 19990985 19991743 -162423499 + HAL1b LINE L1 1 1839 -668 183 258 0 61 chr6 19992229 19992295 -162422947 + L2 LINE L2 3252 3313 0 21 0 0 0 chr6 19992378 19992399 -162422843 + AT_rich Low_complexity Low_complexity 1 21 0 1936 150 7 3 chr6 19992552 19992858 -162422384 - AluSx SINE Alu -5 307 1 195 348 0 0 chr6 19993846 19993915 -162421327 + MIR SINE MIR 194 262 0 325 322 190 5 chr6 19994051 19994262 -162420980 + L2 LINE L2 1825 2074 -1240 199 390 0 0 chr6 19994355 19994432 -162420810 - L2 LINE L2 -9 3263 3187 430 294 84 52 chr6 19994474 19994821 -162420421 + MLT1I LTR MaLR 40 397 -12 207 100 0 0 chr6 19995614 19995644 -162419598 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 651 31 41 10 chr6 19995651 19995748 -162419494 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 1904 142 0 4 chr6 19995749 19996024 -162419218 - AluSx SINE Alu -38 274 1 3673 113 14 2 chr6 19996216 19996722 -162418520 - MER75 DNA T2_type 0 514 3 2415 106 0 0 chr6 19997170 19997482 -162417760 + AluSx SINE Alu 1 312 0 210 306 100 96 chr6 19997518 19998100 -162417142 - L2 LINE L2 -455 2859 2276 1038 189 92 10 chr6 19998455 19998661 -162416581 - MER58A DNA MER1_type -1 223 1 329 319 57 97 chr6 20000818 20001066 -162414176 - L3 LINE CR1 -107 1470 1233 353 241 12 12 chr6 20001260 20001343 -162413899 - MIR3 SINE MIR -28 180 98 2073 104 14 4 chr6 20001894 20002214 -162413028 + AluSc SINE Alu 1 323 0 198 71 0 0 chr6 20003108 20003136 -162412106 + (GGGAGA)n Simple_repeat Simple_repeat 3 30 0 757 124 0 0 chr6 20003320 20003433 -162411809 - AluSg/x SINE Alu -1 309 197 25 0 0 0 chr6 20003616 20003641 -162411601 + AT_rich Low_complexity Low_complexity 1 25 0 1768 161 58 0 chr6 20003701 20003992 -162411250 + AluJb SINE Alu 1 308 -4 204 40 0 0 chr6 20005342 20005367 -162409875 + (T)n Simple_repeat Simple_repeat 1 25 0 215 211 74 84 chr6 20005985 20006080 -162409162 + MIR SINE MIR 158 251 -11 * 218 255 0 0 chr6 20006046 20006097 -162409145 + L2 LINE L2 3263 3313 0 222 91 0 0 chr6 20006534 20006567 -162408675 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2232 129 0 0 chr6 20007121 20007431 -162407811 - AluSx SINE Alu -2 310 1 227 407 19 12 chr6 20007591 20007753 -162407489 + L2 LINE L2 2930 3092 -180 2390 97 3 0 chr6 20007901 20008212 -162407030 + AluSx SINE Alu 1 312 0 289 339 8 0 chr6 20009037 20009164 -162406078 + MIR SINE MIR 132 259 -3 207 292 46 0 chr6 20010838 20010903 -162404339 + L3 LINE CR1 1509 1576 -1 193 26 53 53 chr6 20010934 20010972 -162404270 + (TAAG)n Simple_repeat Simple_repeat 4 41 0 1759 184 3 0 chr6 20011558 20011852 -162403390 - AluJb SINE Alu -17 295 1 222 37 0 0 chr6 20011852 20011879 -162403363 + (T)n Simple_repeat Simple_repeat 1 27 0 205 344 33 11 chr6 20011879 20011969 -162403273 - MIR SINE MIR -92 116 25 2362 82 0 0 chr6 20012000 20012292 -162402950 + AluSc SINE Alu 1 292 -17 216 0 0 0 chr6 20013053 20013077 -162402165 + (T)n Simple_repeat Simple_repeat 1 24 0 2142 101 34 0 chr6 20013665 20013963 -162401279 + AluSq SINE Alu 1 308 -5 511 248 239 10 chr6 20018154 20018464 -162396778 + L1ME4a LINE L1 5736 6116 -5 35 0 0 0 chr6 20018495 20018530 -162396712 + AT_rich Low_complexity Low_complexity 1 35 0 373 266 55 51 chr6 20020599 20020755 -162394487 + MIR SINE MIR 35 191 -62 641 228 137 25 chr6 20020758 20020999 -162394243 + L2 LINE L2 3046 3313 0 546 272 88 55 chr6 20021041 20021258 -162393984 + MIR SINE MIR 2 225 -37 2348 131 70 15 chr6 20021587 20021984 -162393258 - MSTA LTR MaLR -9 419 1 6803 170 59 4 chr6 20021984 20023189 -162392053 - MSTA-int LTR MaLR 0 1651 381 473 324 71 18 chr6 20023355 20023580 -162391662 - MIR SINE MIR -6 256 20 263 302 22 122 chr6 20023815 20024037 -162391205 + L2 LINE L2 3048 3247 -25 398 296 184 14 chr6 20024541 20024764 -162390478 + MIR SINE MIR 2 262 0 278 294 31 47 chr6 20024947 20025063 -162390179 + MIR3 SINE MIR 48 160 -48 281 286 11 0 chr6 20025065 20025156 -162390086 - MER117 DNA MER1_type -2 195 104 184 220 20 20 chr6 20025250 20025300 -162389942 + MIR3 SINE MIR 159 208 0 638 247 20 0 chr6 20026135 20026281 -162388961 - MLT1A1 LTR MaLR 0 365 217 498 337 35 5 chr6 20026723 20026925 -162388317 - MIR SINE MIR -10 252 45 24 0 0 0 chr6 20028005 20028029 -162387213 + AT_rich Low_complexity Low_complexity 1 24 0 414 57 0 0 chr6 20028734 20028787 -162386455 + (TTTCC)n Simple_repeat Simple_repeat 1 53 0 2239 88 18 0 chr6 20028803 20029088 -162386154 - AluSc SINE Alu -19 290 1 243 0 0 0 chr6 20030450 20030477 -162384765 + (T)n Simple_repeat Simple_repeat 1 27 0 2464 164 34 7 chr6 20031269 20031683 -162383559 - MSTA LTR MaLR 0 428 4 6266 180 102 62 chr6 20031684 20033201 -162382041 - MSTA-int LTR MaLR 0 1580 3 2490 164 19 24 chr6 20033208 20033634 -162381608 - MSTA LTR MaLR -4 424 1 1351 146 32 14 chr6 20033634 20033854 -162381388 + MSTB1 LTR MaLR 79 302 -130 234 192 0 0 chr6 20034102 20034154 -162381088 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1178 246 87 58 chr6 20034176 20034680 -162380562 - L1MC4 LINE L1 -142 7900 7382 2301 172 8 14 chr6 20034889 20035256 -162379986 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr6 20036036 20036064 -162379178 + AT_rich Low_complexity Low_complexity 1 28 0 339 44 0 0 chr6 20036623 20036668 -162378574 + (T)n Simple_repeat Simple_repeat 1 45 0 183 80 0 0 chr6 20036695 20036720 -162378522 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 510 311 183 28 chr6 20036918 20037625 -162377617 - L1ME4a LINE L1 -3 6118 5303 3376 155 11 9 chr6 20037915 20038549 -162376693 + L1MA8 LINE L1 5652 6286 -5 1117 324 123 27 chr6 20038692 20039322 -162375920 + L3 LINE CR1 272 1011 -566 1301 167 147 82 chr6 20039322 20039711 -162375531 - MLT2D LTR ERVL 0 414 1 1117 324 123 27 chr6 20039711 20039961 -162375281 + L3 LINE CR1 1011 1236 -341 545 277 126 25 chr6 20039964 20040242 -162375000 - MLT1K LTR MaLR -2 586 281 7439 151 35 39 chr6 20040275 20041229 -162374013 + L1MA7 LINE L1 3769 4726 -1565 312 48 0 0 chr6 20041229 20041271 -162373971 + (CAA)n Simple_repeat Simple_repeat 1 42 0 7439 151 35 39 chr6 20041271 20042366 -162372876 + L1MA7 LINE L1 4726 5788 -503 201 39 0 0 chr6 20042366 20042392 -162372850 + (CA)n Simple_repeat Simple_repeat 1 26 0 7439 151 35 39 chr6 20042392 20042772 -162372470 + L1MA7 LINE L1 5788 6168 -123 547 335 132 10 chr6 20042957 20043267 -162371975 + L3 LINE CR1 1229 1576 -1 217 246 18 0 chr6 20044205 20044262 -162370980 + MIR SINE MIR 107 164 -98 615 265 74 56 chr6 20044841 20045165 -162370077 - LTR33 LTR ERVL -187 334 5 2347 99 3 0 chr6 20045886 20046189 -162369053 - AluSx SINE Alu 0 312 9 1941 96 37 51 chr6 20047479 20047833 -162367409 + L1PA13 LINE L1 5812 6160 -3 256 303 34 0 chr6 20048155 20048244 -162366998 + MIR SINE MIR 123 214 -48 594 293 66 47 chr6 20048287 20048526 -162366716 - MIR SINE MIR -16 246 7 392 341 101 36 chr6 20048803 20049317 -162365925 - L2 LINE L2 -1 3271 2715 404 321 80 15 chr6 20049617 20049754 -162365488 + MIR3 SINE MIR 47 192 -16 343 383 22 17 chr6 20049902 20050082 -162365160 - MIR3 SINE MIR -13 195 15 1726 219 54 43 chr6 20055129 20055591 -162359651 + MLT1C LTR MaLR 1 467 0 637 193 70 46 chr6 20056063 20056402 -162358840 - MER31B LTR ERV1 -5 461 1 294 191 238 41 chr6 20056793 20056940 -162358302 + LTR33 LTR ERVL 72 247 -276 308 318 129 18 chr6 20057862 20058032 -162357210 + MIR SINE MIR 7 195 -67 471 35 0 0 chr6 20058454 20058511 -162356731 + (CA)n Simple_repeat Simple_repeat 2 58 0 1201 145 28 5 chr6 20058511 20058725 -162356517 - MER46A DNA MER2_type -2 234 16 2495 210 50 39 chr6 20059354 20059939 -162355303 + MLT1E LTR MaLR 3 593 0 586 200 91 24 chr6 20060859 20061024 -162354218 + MER5B DNA MER1_type 1 176 -2 1713 149 82 7 chr6 20061299 20061581 -162353661 - AluJb SINE Alu -9 303 1 259 308 113 13 chr6 20061683 20061842 -162353400 - L2 LINE L2 -188 3084 2910 1734 184 113 30 chr6 20061874 20062315 -162352927 + MLT1D LTR MaLR 28 505 0 2378 71 0 3 chr6 20062473 20062767 -162352475 + AluY SINE Alu 1 293 -18 425 345 14 7 chr6 20062956 20063104 -162352138 - MIR3 SINE MIR -57 151 3 1937 119 0 18 chr6 20063543 20063874 -162351368 - AluSc SINE Alu 0 326 1 22 35 0 0 chr6 20064437 20064466 -162350776 + AT_rich Low_complexity Low_complexity 1 29 0 2641 171 13 6 chr6 20064473 20064995 -162350247 - L1MC2 LINE L1 -19 6325 5800 196 307 72 72 chr6 20065589 20065755 -162349487 + MER5A DNA MER1_type 1 166 -23 736 238 6 0 chr6 20065773 20065937 -162349305 - MER58A DNA MER1_type -14 210 46 1687 168 34 0 chr6 20065956 20066224 -162349018 + AluJb SINE Alu 1 277 -35 3436 138 16 2 chr6 20066241 20066822 -162348420 + L1MB3 LINE L1 5593 6181 -2 282 29 0 0 chr6 20068087 20068122 -162347120 + (TG)n Simple_repeat Simple_repeat 1 35 0 1783 173 35 49 chr6 20068213 20068583 -162346659 + MLT1A1 LTR MaLR 1 365 0 296 258 48 0 chr6 20069124 20069186 -162346056 - MIR SINE MIR -190 72 8 376 275 0 64 chr6 20069357 20069528 -162345714 + MIR SINE MIR 89 248 -14 24569 131 17 20 chr6 20070147 20076545 -162338697 + L1PA8A LINE L1 4 6444 -2 1234 98 0 0 chr6 20079262 20079425 -162335817 - AluSg/x SINE Alu -16 296 134 2196 108 7 3 chr6 20079425 20079730 -162335512 - AluSq SINE Alu -7 306 1 404 257 164 26 chr6 20079918 20080070 -162335172 - MIR SINE MIR -21 241 69 241 128 33 44 chr6 20080698 20080878 -162334364 + (TA)n Simple_repeat Simple_repeat 1 178 0 464 222 7 0 chr6 20081653 20081797 -162333445 + CT-rich Low_complexity Low_complexity 3 147 0 498 170 0 0 chr6 20084774 20084868 -162330374 + CT-rich Low_complexity Low_complexity 4 97 0 647 73 31 0 chr6 20084897 20084993 -162330249 + (TTCTC)n Simple_repeat Simple_repeat 5 103 0 190 333 76 0 chr6 20084995 20085061 -162330181 - L2 LINE L2 -1 3271 3201 805 303 73 62 chr6 20085100 20085938 -162329304 + L2 LINE L2 2437 3276 -37 1034 165 170 116 chr6 20086050 20086420 -162328822 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr6 20090464 20090488 -162324754 + AT_rich Low_complexity Low_complexity 1 24 0 371 250 177 55 chr6 20091059 20091223 -162324019 + MIR3 SINE MIR 18 201 -7 307 395 93 0 chr6 20091436 20091598 -162323644 - L2 LINE L2 -15 3257 3081 2497 151 13 0 chr6 20092393 20092771 -162322471 + MSTB LTR MaLR 1 383 -43 853 336 43 37 chr6 20092943 20093428 -162321814 + MLT1H1 LTR MaLR 41 528 -27 6254 166 23 12 chr6 20093636 20095222 -162320020 + L1MC1 LINE L1 4733 6332 -1 274 242 91 0 chr6 20095351 20095417 -162319825 - MIR SINE MIR -71 191 120 383 277 6 38 chr6 20097740 20097899 -162317343 - HAL1b LINE L1 -4 1344 1191 230 234 31 0 chr6 20097959 20098023 -162317219 + (TA)n Simple_repeat Simple_repeat 2 67 0 183 200 29 14 chr6 20098144 20098214 -162317028 + CT-rich Low_complexity Low_complexity 2 72 0 231 240 128 16 chr6 20098341 20098466 -162316776 - L1P4 LINE L1 -698 5468 5330 1205 218 4 4 chr6 20098711 20098950 -162316292 - AluJo SINE Alu -15 297 59 2583 214 50 19 chr6 20099564 20100421 -162314821 - L1ME LINE L1 -667 5566 4685 2409 263 42 46 chr6 20100432 20101638 -162313604 - L1ME LINE L1 -4386 2010 810 1039 168 0 11 chr6 20101711 20101890 -162313352 - AluSg/x SINE Alu 0 310 134 474 209 95 0 chr6 20101892 20102050 -162313192 - L1ME LINE L1 -5571 825 653 188 189 38 0 chr6 20102092 20102145 -162313097 + (CAATT)n Simple_repeat Simple_repeat 1 55 0 546 258 61 88 chr6 20102196 20102526 -162312716 - MER21B LTR ERV1 -260 603 283 1045 216 8 124 chr6 20102530 20102892 -162312350 - MLT1A2 LTR MaLR 0 374 55 314 328 0 16 chr6 20102898 20103023 -162312219 + L1MEc LINE L1 940 1062 -5334 184 367 92 31 chr6 20103239 20103337 -162311905 - L2 LINE L2 -32 3240 3137 363 321 91 24 chr6 20104055 20104220 -162311022 - MIR SINE MIR -82 180 5 397 311 0 22 chr6 20104301 20104437 -162310805 - MER5A DNA MER1_type -10 168 39 186 255 21 0 chr6 20104446 20104493 -162310749 + MER5B DNA MER1_type 125 172 -6 538 248 161 0 chr6 20104746 20104895 -162310347 + MER5B DNA MER1_type 1 173 -5 198 309 151 8 chr6 20105279 20105405 -162309837 - L2 LINE L2 -8 3305 3162 189 0 0 0 chr6 20105569 20105590 -162309652 + (CA)n Simple_repeat Simple_repeat 2 22 0 197 383 54 40 chr6 20109916 20110065 -162305177 + L2 LINE L2 3004 3154 -118 21 89 0 0 chr6 20110130 20110186 -162305056 + AT_rich Low_complexity Low_complexity 1 56 0 1846 158 24 0 chr6 20110236 20110527 -162304715 - AluJo SINE Alu -14 298 1 284 298 44 89 chr6 20110909 20111067 -162304175 - MIR SINE MIR -79 183 33 333 0 0 0 chr6 20111476 20111513 -162303729 + (TG)n Simple_repeat Simple_repeat 2 38 0 1102 210 13 18 chr6 20112110 20112339 -162302903 - MIR SINE MIR -21 241 14 309 77 0 0 chr6 20113597 20113636 -162301606 + MADE1 DNA Mariner 1 39 -41 21 36 0 0 chr6 20113651 20113679 -162301563 + AT_rich Low_complexity Low_complexity 1 28 0 404 192 346 8 chr6 20113861 20113991 -162301251 + MER5A DNA MER1_type 9 182 -7 249 33 0 0 chr6 20114133 20114163 -162301079 + (TG)n Simple_repeat Simple_repeat 2 31 0 398 287 81 34 chr6 20115779 20115988 -162299254 - MIR SINE MIR -37 225 7 1429 226 134 53 chr6 20116476 20116909 -162298333 + MLT2B1 LTR ERVL 1 468 -52 2380 178 11 104 chr6 20116914 20117482 -162297760 + MLT2B2 LTR ERVL 1 515 0 804 153 217 26 chr6 20118042 20118231 -162297011 - L1MB5 LINE L1 -14 6160 5936 13730 165 33 13 chr6 20118392 20122156 -162293086 - L1MA6 LINE L1 -9 6291 2448 1852 208 6 6 chr6 20123236 20123601 -162291641 - MLT1A1 LTR MaLR 0 365 1 313 197 15 15 chr6 20124063 20124129 -162291113 - L3 LINE CR1 -683 894 829 219 69 0 0 chr6 20124321 20124350 -162290892 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 1228 177 146 16 chr6 20124360 20124614 -162290628 - AluJo SINE Alu -15 287 1 261 0 0 0 chr6 20128355 20128384 -162286858 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3236 85 32 21 chr6 20128389 20128861 -162286381 - L1PA11 LINE L1 -8 6166 5690 1758 166 42 86 chr6 20131001 20131434 -162283808 + MLT2D LTR ERVL 1 414 0 287 314 33 33 chr6 20131439 20131560 -162283682 - MIR3 SINE MIR -19 189 69 1277 175 17 115 chr6 20132304 20132721 -162282521 - L1MC4 LINE L1 0 8042 7667 204 206 9 84 chr6 20133162 20133269 -162281973 + T-rich Low_complexity Low_complexity 3 101 0 818 274 86 57 chr6 20133296 20133985 -162281257 - HAL1 LINE L1 -170 2337 1629 577 190 0 0 chr6 20133971 20134071 -162281171 + L1P4 LINE L1 2613 2712 -4137 * 2272 154 26 0 chr6 20134075 20134464 -162280778 + MER57A LTR ERV1 1 399 -4 15261 125 66 40 chr6 20134473 20136591 -162278651 + MER57A-int LTR ERV1 1 2063 -5474 322 250 0 0 chr6 20136591 20136655 -162278587 + AluJ/FRAM SINE Alu 232 295 -7 2116 116 3 13 chr6 20136657 20136960 -162278282 + AluSx SINE Alu 1 300 -12 15261 125 66 40 chr6 20136960 20137306 -162277936 + MER57A-int LTR ERV1 2063 2596 -4941 * 21185 104 19 6 chr6 20137299 20141477 -162273765 + MER57A-int LTR ERV1 2874 7122 -415 665 141 25 8 chr6 20141523 20141644 -162273598 + LTR54B LTR ERV1 5 127 -371 1385 109 118 25 chr6 20141644 20141882 -162273360 + MER57A-int LTR ERV1 7272 7531 -6 2226 178 10 0 chr6 20141887 20142286 -162272956 + MER57A LTR ERV1 1 403 0 12888 210 22 16 chr6 20142286 20143387 -162271855 + L1P4 LINE L1 2713 3806 -3062 222 59 20 39 chr6 20143387 20143438 -162271804 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 12888 210 22 16 chr6 20143438 20144017 -162271225 + L1P4 LINE L1 3806 4380 -2488 2097 106 4 0 chr6 20144017 20144290 -162270952 + AluSp SINE Alu 17 290 -23 12888 210 22 16 chr6 20144290 20146135 -162269107 + L1P4 LINE L1 4380 6253 -615 367 111 0 0 chr6 20146134 20146188 -162269054 + L1P4 LINE L1 5497 5550 -611 * 3964 156 1 10 chr6 20146189 20146862 -162268380 + L1PA15 LINE L1 5499 6165 0 214 364 10 20 chr6 20147255 20147354 -162267888 + MIR SINE MIR 53 150 -112 210 71 0 0 chr6 20147433 20147461 -162267781 + (TTA)n Simple_repeat Simple_repeat 1 28 0 323 230 64 79 chr6 20147681 20147978 -162267264 - L1MEc LINE L1 -3771 2375 2110 674 34 23 0 chr6 20148303 20148391 -162266851 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 533 319 26 35 chr6 20148475 20148707 -162266535 + L3 LINE CR1 457 686 -891 225 395 22 0 chr6 20149294 20149428 -162265814 + L3 LINE CR1 1110 1246 -331 21 36 0 0 chr6 20149785 20149813 -162265429 + AT_rich Low_complexity Low_complexity 1 28 0 185 258 17 150 chr6 20149890 20150010 -162265232 + L3 LINE CR1 1461 1564 -13 795 273 62 72 chr6 20150470 20151071 -162264171 + L1M4 LINE L1 2861 3455 -2691 22 0 0 0 chr6 20151132 20151154 -162264088 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 20151178 20151207 -162264035 + AT_rich Low_complexity Low_complexity 1 29 0 2111 103 0 0 chr6 20151374 20151684 -162263558 + AluSx SINE Alu 1 310 0 303 164 0 0 chr6 20151746 20151801 -162263441 + LTR19B LTR ERV1 526 580 0 452 328 129 38 chr6 20151827 20152407 -162262835 + L1M4 LINE L1 3795 4427 -1719 1815 142 22 0 chr6 20152562 20152879 -162262363 + L1MA10 LINE L1 5320 5643 -525 1674 142 48 21 chr6 20152879 20153210 -162262032 + L1MA10 LINE L1 5986 6331 -3 332 200 11 0 chr6 20153241 20153331 -162261911 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1847 170 17 0 chr6 20153333 20153621 -162261621 - AluJo SINE Alu -19 293 1 22 70 0 0 chr6 20153761 20153804 -162261438 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr6 20154325 20154358 -162260884 + AT_rich Low_complexity Low_complexity 1 33 0 207 164 60 15 chr6 20154877 20154944 -162260298 + (TA)n Simple_repeat Simple_repeat 1 70 0 1683 221 68 38 chr6 20155158 20155319 -162259923 + MER74B LTR ERVL 1 156 -466 2089 122 10 3 chr6 20155319 20155614 -162259628 + AluSg SINE Alu 1 297 -13 1683 221 68 38 chr6 20155614 20155981 -162259261 + MER74B LTR ERVL 156 545 -77 252 219 48 68 chr6 20156130 20156276 -162258966 + L1ME4a LINE L1 5945 6087 -34 1783 230 34 50 chr6 20157914 20158410 -162256832 - LTR40a LTR ERVL 0 519 32 331 155 70 0 chr6 20158410 20158481 -162256761 - LTR40a LTR ERVL -443 76 1 1323 211 46 38 chr6 20158707 20159237 -162256005 + MLT1E3 LTR MaLR 70 624 0 426 319 99 14 chr6 20159407 20159620 -162255622 - MIR SINE MIR 0 262 32 2630 46 0 0 chr6 20159625 20159931 -162255311 - AluY SINE Alu -5 306 1 946 256 78 25 chr6 20160043 20160364 -162254878 + MLT1I LTR MaLR 64 401 -8 229 386 18 9 chr6 20160438 20160552 -162254690 + L2 LINE L2 2849 2963 -309 665 245 27 33 chr6 20160564 20160748 -162254494 + MIR SINE MIR 7 189 -73 37 39 0 0 chr6 20160748 20160799 -162254443 + AT_rich Low_complexity Low_complexity 1 51 0 315 327 165 40 chr6 20160828 20161076 -162254166 + L2 LINE L2 2993 3271 -1 27 49 0 0 chr6 20162853 20162894 -162252348 + AT_rich Low_complexity Low_complexity 1 41 0 278 322 11 23 chr6 20163366 20163543 -162251699 + T-rich Low_complexity Low_complexity 4 178 0 333 0 0 0 chr6 20163615 20163652 -162251590 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 435 38 0 0 chr6 20163651 20163704 -162251538 + (TC)n Simple_repeat Simple_repeat 1 53 0 195 42 0 0 chr6 20163703 20163727 -162251515 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 202 277 0 75 chr6 20164318 20164412 -162250830 + MIR SINE MIR 54 140 -68 246 333 49 10 chr6 20165846 20165948 -162249294 - MIR3 SINE MIR -11 197 92 797 162 18 54 chr6 20166456 20166623 -162248619 + MER5A DNA MER1_type 28 188 -1 2483 74 151 5 chr6 20168187 20168578 -162246664 - LTR7 LTR ERV1 -2 448 1 2268 96 48 13 chr6 20168578 20168955 -162246287 - HERVH LTR ERV1 0 7713 7324 1285 139 19 0 chr6 20168955 20169171 -162246071 - HERVH LTR ERV1 -1894 5819 5600 4136 115 44 0 chr6 20169172 20169806 -162245436 - HERVH LTR ERV1 -2564 5149 4488 3380 86 4 6 chr6 20169808 20170311 -162244931 - HERVH LTR ERV1 -3720 3993 3492 854 142 20 0 chr6 20170301 20170449 -162244793 - HERVH LTR ERV1 -4423 3290 3140 * 18818 92 10 40 chr6 20170443 20173521 -162241721 - HERVH LTR ERV1 -4726 2987 1 2488 77 151 5 chr6 20173523 20173914 -162241328 - LTR7 LTR ERV1 -2 448 1 476 353 15 34 chr6 20174185 20174389 -162240853 + MIR SINE MIR 2 201 -61 279 325 25 0 chr6 20174487 20174567 -162240675 + L2 LINE L2 3186 3267 -5 3381 170 13 42 chr6 20175065 20175819 -162239423 - L1MB3 LINE L1 -2 6181 5450 1430 218 50 3 chr6 20175855 20176158 -162239084 + MLT1A1 LTR MaLR 49 365 0 231 152 0 0 chr6 20176203 20176249 -162238993 + CT-rich Low_complexity Low_complexity 4 49 0 3049 240 158 8 chr6 20176538 20177592 -162237650 + L1MC4 LINE L1 6459 7670 -372 333 0 0 0 chr6 20177637 20177674 -162237568 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2159 120 0 0 chr6 20177677 20177960 -162237282 - AluSx SINE Alu -29 283 1 1124 221 8 40 chr6 20177973 20178138 -162237104 - AluJb SINE Alu -18 294 138 2171 110 10 0 chr6 20178138 20178430 -162236812 - AluSx SINE Alu -17 295 1 1124 221 8 40 chr6 20178430 20178517 -162236725 - AluJb SINE Alu -174 138 50 447 257 0 0 chr6 20178572 20178685 -162236557 + L1MC4 LINE L1 7787 7899 -143 2136 190 42 6 chr6 20178960 20179455 -162235787 + L1MD3 LINE L1 7473 7985 -10 440 340 68 38 chr6 20180349 20180614 -162234628 + L1MC/D LINE L1 5512 5784 -2024 1238 182 104 17 chr6 20180684 20180981 -162234261 + MER33 DNA MER1_type 1 323 -1 991 301 68 39 chr6 20181955 20182384 -162232858 - L2 LINE L2 -1 3312 2866 1745 172 7 13 chr6 20182384 20182686 -162232556 + AluJb SINE Alu 1 300 -12 991 301 68 39 chr6 20182686 20182738 -162232504 - L2 LINE L2 -447 2866 2817 412 99 28 0 chr6 20182739 20182810 -162232432 + GA-rich Low_complexity Low_complexity 4 76 0 2093 138 0 3 chr6 20182810 20183122 -162232120 + AluSx SINE Alu 1 311 -1 574 319 168 22 chr6 20183135 20183539 -162231703 - L2 LINE L2 -445 2869 2407 2312 237 41 12 chr6 20183542 20184195 -162231047 + L1ME1 LINE L1 5486 6157 -9 2443 70 0 0 chr6 20184195 20184493 -162230749 - AluY SINE Alu -13 298 1 886 291 38 50 chr6 20184508 20184951 -162230291 - L2 LINE L2 -1573 1741 1304 3218 95 59 6 chr6 20184951 20185424 -162229818 + Charlie3 DNA MER1_type 1 498 -2212 * 3302 79 8 19 chr6 20185420 20185890 -162229352 + Charlie3 DNA MER1_type 2242 2706 -4 621 272 133 5 chr6 20185891 20186086 -162229156 - L2 LINE L2 -2004 1310 1091 359 250 0 0 chr6 20186298 20186386 -162228856 - MER63 DNA MER1_type 0 1062 975 * 385 164 0 0 chr6 20186384 20186445 -162228797 - MER63 DNA MER1_type -91 745 685 587 318 99 50 chr6 20187107 20188053 -162227189 + L2 LINE L2 2315 3313 0 341 256 128 32 chr6 20188169 20188325 -162226917 - MIR3 SINE MIR -17 191 21 268 240 144 56 chr6 20188762 20188887 -162226355 + MIR SINE MIR 121 256 -6 265 83 83 0 chr6 20189295 20189343 -162225899 + MER53 DNA DNA 1 52 -137 2385 84 0 13 chr6 20189397 20189705 -162225537 + AluSc SINE Alu 6 309 0 1751 214 84 7 chr6 20189847 20190277 -162224965 - MLT1C LTR MaLR -4 463 1 1523 191 50 3 chr6 20190927 20191209 -162224033 - AluJb SINE Alu -17 295 1 1977 143 13 3 chr6 20191718 20192018 -162223224 + AluJb SINE Alu 1 303 -9 353 280 83 15 chr6 20192956 20193088 -162222154 - L1ME4a LINE L1 -25 6096 5956 517 333 60 32 chr6 20193192 20193441 -162221801 + MIR SINE MIR 5 260 -2 631 314 82 18 chr6 20193441 20193782 -162221460 - L1ME4a LINE L1 -265 5856 5494 225 0 0 0 chr6 20193785 20193810 -162221432 + (TG)n Simple_repeat Simple_repeat 2 26 0 507 207 129 159 chr6 20194230 20194471 -162220771 + MLT1H1 LTR MaLR 112 335 -220 2030 131 0 0 chr6 20194471 20194787 -162220455 + AluSx SINE Alu 1 316 0 507 207 129 159 chr6 20194787 20195002 -162220240 + MLT1H1 LTR MaLR 335 555 0 2765 299 70 24 chr6 20197619 20199072 -162216170 + L1MEc LINE L1 35 1554 -4842 2444 76 0 0 chr6 20199202 20199505 -162215737 - AluY SINE Alu -8 303 1 2744 148 42 18 chr6 20199513 20200019 -162215223 - L1MC1 LINE L1 0 6333 5816 1021 182 5 5 chr6 20200104 20200117 -162215125 - L1MC1 LINE L1 0 6333 6321 975 106 11 17 chr6 20200117 20200296 -162214946 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 1021 182 5 5 chr6 20200296 20200474 -162214768 - L1MC1 LINE L1 -11 6322 6142 252 278 74 36 chr6 20200475 20200784 -162214458 - L1MEd LINE L1 -3704 2425 2105 1042 284 116 35 chr6 20201579 20202288 -162212954 - L1MEd LINE L1 -4862 1257 492 234 256 233 57 chr6 20202494 20202670 -162212572 - L1MEd LINE L1 -5857 262 56 197 301 140 29 chr6 20202888 20203024 -162212218 + L3 LINE CR1 295 445 -1132 213 353 0 0 chr6 20203042 20203144 -162212098 + L3 LINE CR1 387 488 -1089 519 266 161 14 chr6 20203147 20203365 -162211877 + LTR16C LTR ERVL 1 250 -241 611 346 123 48 chr6 20203520 20204083 -162211159 + L3 LINE CR1 486 1120 -457 5206 124 22 15 chr6 20204083 20205093 -162210149 - L1PA16 LINE L1 -10 6156 5128 611 346 123 48 chr6 20205093 20205280 -162209962 + L3 LINE CR1 1120 1292 -285 340 291 0 0 chr6 20205304 20205383 -162209859 + L2 LINE L2 3193 3271 -1 397 282 60 0 chr6 20206655 20206772 -162208470 + MIR3 SINE MIR 83 206 -2 204 44 0 67 chr6 20209149 20209194 -162206048 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 2021 160 38 24 chr6 20209646 20210070 -162205172 - MSTB1 LTR MaLR -2 430 1 971 105 29 0 chr6 20210200 20210372 -162204870 + CT-rich Low_complexity Low_complexity 3 179 0 1016 145 0 6 chr6 20210387 20210566 -162204676 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 270 71 18 36 chr6 20210573 20210629 -162204613 + (TTCCC)n Simple_repeat Simple_repeat 2 56 0 1255 227 58 7 chr6 20210633 20210924 -162204318 - AluJo SINE Alu -6 306 1 396 0 0 0 chr6 20212086 20212130 -162203112 + (GA)n Simple_repeat Simple_repeat 1 44 0 386 283 128 46 chr6 20213920 20214224 -162201018 - L1M4 LINE L1 -2439 3707 3379 1904 269 181 25 chr6 20214387 20215463 -162199779 - L2 LINE L2 -1519 1795 552 10306 221 56 10 chr6 20216144 20218084 -162197158 - L1MC1 LINE L1 0 7128 5279 198 0 0 0 chr6 20218084 20218106 -162197136 + (TTG)n Simple_repeat Simple_repeat 3 24 0 10306 221 56 10 chr6 20218106 20220042 -162195200 - L1MC1 LINE L1 -1849 5279 3072 343 279 85 95 chr6 20220083 20220388 -162194854 - HAL1 LINE L1 -37 2470 2169 242 328 49 16 chr6 20220632 20220754 -162194488 + L2 LINE L2 897 1022 -2292 339 146 0 0 chr6 20220758 20220813 -162194429 - Alu SINE Alu -3 297 243 301 139 120 148 chr6 20220809 20220854 -162194388 - MER44D DNA MER2_type -1914 573 528 * 459 35 0 0 chr6 20220854 20220911 -162194331 + (CA)n Simple_repeat Simple_repeat 1 57 0 301 139 120 148 chr6 20220911 20220973 -162194269 - MER44D DNA MER2_type -1959 528 469 282 203 89 0 chr6 20220976 20221055 -162194187 - L1MC4 LINE L1 -1344 6698 6613 311 277 0 17 chr6 20221058 20221177 -162194065 + (TA)n Simple_repeat Simple_repeat 1 117 0 2295 187 71 2 chr6 20221177 20221600 -162193642 - MER44D DNA MER2_type -98 507 1 312 292 23 23 chr6 20221642 20221813 -162193429 - L1MC1 LINE L1 -6217 206 36 1491 239 98 21 chr6 20222055 20222527 -162192715 - L1ME1 LINE L1 -20 6146 5639 359 291 48 96 chr6 20222544 20222836 -162192406 - HAL1 LINE L1 -1421 1086 809 862 173 25 0 chr6 20222843 20223005 -162192237 + L1MA7 LINE L1 5442 5607 -705 1630 143 27 10 chr6 20223043 20223343 -162191899 + L1MA7 LINE L1 5982 6286 -5 556 180 27 0 chr6 20223349 20223460 -162191782 + L1MA9 LINE L1 6163 6276 -36 190 312 22 11 chr6 20223843 20223970 -162191272 - MER5B DNA MER1_type -10 179 3 191 367 0 0 chr6 20225156 20225246 -162189996 + MER5A DNA MER1_type 90 179 -10 212 353 71 40 chr6 20225587 20225877 -162189365 - L2 LINE L2 -18 3254 2883 522 339 139 50 chr6 20225940 20227132 -162188110 - L2 LINE L2 -505 2809 1511 1154 246 121 21 chr6 20228571 20229356 -162185886 - L1MCa LINE L1 -3519 2907 2087 466 245 126 53 chr6 20229363 20229770 -162185472 - L1MCa LINE L1 -4889 1546 924 1611 196 0 11 chr6 20230061 20230346 -162184896 + AluJb SINE Alu 1 282 -30 1106 185 28 5 chr6 20232643 20232854 -162182388 + AluJo SINE Alu 87 302 -10 23 54 0 0 chr6 20232917 20232954 -162182288 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 20233473 20233496 -162181746 + AT_rich Low_complexity Low_complexity 1 23 0 337 325 16 32 chr6 20234127 20234250 -162180992 - MER5A DNA MER1_type 0 189 69 612 232 13 2 chr6 20235069 20235228 -162180014 + L1ME3 LINE L1 5856 6013 -157 839 273 31 4 chr6 20235600 20235856 -162179386 - L1ME3 LINE L1 -6 6156 5894 324 339 134 13 chr6 20235903 20236142 -162179100 - HAL1 LINE L1 -2001 506 239 254 385 0 10 chr6 20236226 20236330 -162178912 + MIR3 SINE MIR 15 117 -91 219 220 169 17 chr6 20236398 20236457 -162178785 - MIR SINE MIR -104 104 37 1560 95 63 130 chr6 20236820 20237167 -162178075 - L1MA3 LINE L1 -1 6304 5981 886 251 0 0 chr6 20237166 20237353 -162177889 + MST-int LTR MaLR 746 932 -719 * 1177 141 0 5 chr6 20237356 20237541 -162177701 + MSTA LTR MaLR 245 428 0 206 282 188 0 chr6 20237624 20237709 -162177533 - L3 LINE CR1 -85 1492 1392 1706 159 17 17 chr6 20238614 20238915 -162176327 - AluSq SINE Alu -12 301 1 1091 160 63 93 chr6 20239013 20239345 -162175897 - MER33 DNA MER1_type -2 322 1 195 311 40 14 chr6 20240146 20240220 -162175022 - MIR3 SINE MIR -27 181 106 790 245 58 5 chr6 20240553 20240804 -162174438 + L2 LINE L2 2764 3022 -291 462 114 0 0 chr6 20241319 20241389 -162173853 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 21 0 0 0 chr6 20241883 20241904 -162173338 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr6 20241955 20242005 -162173237 + AT_rich Low_complexity Low_complexity 1 50 0 461 263 161 10 chr6 20242808 20243013 -162172229 + MIR SINE MIR 6 241 -21 226 245 0 0 chr6 20244407 20244460 -162170782 + MLT1K LTR MaLR 524 576 -12 780 265 60 95 chr6 20244568 20245169 -162170073 + MLT1G1 LTR MaLR 16 595 0 910 170 116 76 chr6 20245653 20245943 -162169299 - L1M4 LINE L1 -650 5524 5216 515 292 119 31 chr6 20246811 20247037 -162168205 - L3 LINE CR1 -6 1571 1326 2159 87 3 7 chr6 20247347 20247634 -162167608 - AluSc SINE Alu 0 309 24 364 274 118 0 chr6 20249123 20249225 -162166017 - L2 LINE L2 0 3272 3159 447 238 30 0 chr6 20249896 20249997 -162165245 + L2 LINE L2 3169 3272 0 663 0 0 0 chr6 20250214 20250286 -162164956 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 856 150 232 36 chr6 20250303 20250523 -162164719 + AluJb SINE Alu 37 299 -13 1624 185 73 15 chr6 20250737 20251066 -162164176 + MER7A DNA MER2_type 1 346 0 338 325 8 15 chr6 20251664 20251795 -162163447 + MIR SINE MIR 31 159 -65 1380 207 51 85 chr6 20251804 20252277 -162162965 + MLT1C LTR MaLR 1 457 -10 225 214 0 0 chr6 20253106 20253148 -162162094 + (TA)n Simple_repeat Simple_repeat 1 42 0 493 288 68 18 chr6 20253251 20253414 -162161828 - MIR3 SINE MIR -23 185 15 283 313 0 0 chr6 20253458 20253538 -162161704 + MIR SINE MIR 73 152 -110 256 376 66 55 chr6 20253654 20253925 -162161317 + L2 LINE L2 2997 3270 -2 2478 59 3 0 chr6 20255245 20255551 -162159691 - AluY SINE Alu -4 307 1 32 0 0 0 chr6 20258063 20258095 -162157147 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 20258147 20258168 -162157074 + AT_rich Low_complexity Low_complexity 1 21 0 341 332 53 16 chr6 20258189 20258379 -162156863 + MIR3 SINE MIR 11 207 -1 875 204 36 45 chr6 20260757 20260978 -162154264 - MER20 DNA MER1_type 0 219 1 1198 50 29 19 chr6 20261772 20262210 -162153032 + (TTTC)n Simple_repeat Simple_repeat 1 616 0 261 0 0 0 chr6 20262210 20262239 -162153003 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2141 89 4 7 chr6 20262489 20262770 -162152472 + AluSp SINE Alu 1 280 -33 417 20 0 0 chr6 20262772 20262822 -162152420 + (CA)n Simple_repeat Simple_repeat 1 50 0 3059 214 39 55 chr6 20263594 20264523 -162150719 - L1MC4 LINE L1 0 8042 7129 871 237 43 91 chr6 20264524 20264816 -162150426 + L1MC4 LINE L1 6752 7028 -967 2403 98 0 0 chr6 20264816 20265143 -162150099 + L1PA11 LINE L1 5846 6172 -2 871 237 43 91 chr6 20265143 20265179 -162150063 + L1MC4 LINE L1 7028 7064 -931 227 20 61 41 chr6 20265182 20265231 -162150011 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 843 244 26 8 chr6 20265750 20265984 -162149258 - Zaphod DNA AcHobo -46 3985 3748 500 288 11 37 chr6 20265982 20266173 -162149069 - LTR16C LTR ERVL -14 477 292 * 22 70 0 0 chr6 20266590 20266633 -162148609 + AT_rich Low_complexity Low_complexity 1 43 0 336 224 101 41 chr6 20266654 20266922 -162148320 - Zaphod DNA AcHobo -3067 964 681 1847 218 49 14 chr6 20266923 20267368 -162147874 - L1MD3 LINE L1 -44 7951 7491 349 214 0 29 chr6 20267400 20267470 -162147772 - L1MD3 LINE L1 -589 7406 7339 4641 169 20 14 chr6 20267495 20267741 -162147501 - L1PB4 LINE L1 -3 6153 5910 2082 132 26 34 chr6 20267741 20268119 -162147123 - THE1C LTR MaLR 0 375 1 4641 169 20 14 chr6 20268119 20268767 -162146475 - L1PB4 LINE L1 -246 5910 5254 5547 239 44 25 chr6 20268798 20271532 -162143710 - L1PBb LINE L1 -2955 3248 355 311 333 19 38 chr6 20271687 20271846 -162143396 - L1PBb LINE L1 -5884 320 165 1101 258 39 9 chr6 20271869 20272202 -162143040 + L1ME LINE L1 5405 5747 -415 505 349 81 14 chr6 20272220 20272590 -162142652 - L2 LINE L2 -786 2528 2134 658 290 43 73 chr6 20272668 20272884 -162142358 - L2 LINE L2 -24 3289 3083 3639 152 36 12 chr6 20272884 20273569 -162141673 - L1MB3 LINE L1 -1 6182 5481 658 290 43 73 chr6 20273569 20273655 -162141587 - L2 LINE L2 -230 3083 2996 375 329 123 47 chr6 20273669 20274187 -162141055 - L2 LINE L2 -1234 2080 1480 2448 144 62 0 chr6 20274187 20274590 -162140652 - MSTA LTR MaLR 0 428 1 375 329 123 47 chr6 20274590 20274858 -162140384 - L2 LINE L2 -1834 1480 1234 1939 157 44 36 chr6 20276351 20276714 -162138528 - MER47A DNA MER2_type 0 366 1 4093 180 56 15 chr6 20276801 20277667 -162137575 - L1MC3 LINE L1 0 7785 6857 2601 142 12 23 chr6 20277667 20278098 -162137144 + MSTB LTR MaLR 1 426 0 4093 180 56 15 chr6 20278098 20278176 -162137066 - L1MC3 LINE L1 -928 6857 6784 1479 168 26 16 chr6 20278328 20278631 -162136611 + L1MC1 LINE L1 6010 6315 -18 954 215 23 27 chr6 20279963 20280182 -162135060 - MER20 DNA MER1_type -1 218 1 31 26 0 0 chr6 20280570 20280608 -162134634 + AT_rich Low_complexity Low_complexity 1 38 0 749 231 193 6 chr6 20280669 20280985 -162134257 - L1M4 LINE L1 -539 5579 5205 1668 161 77 9 chr6 20280990 20281326 -162133916 - L1MB2 LINE L1 -11 6160 5802 13166 182 10 8 chr6 20281326 20281977 -162133265 + L1PB1 LINE L1 2451 3100 -3051 2431 70 3 0 chr6 20281977 20282276 -162132966 + AluY SINE Alu 1 300 -11 13166 182 10 8 chr6 20282276 20283587 -162131655 + L1PB1 LINE L1 3100 4408 -1743 369 0 0 0 chr6 20283587 20283628 -162131614 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 13166 182 10 8 chr6 20283628 20284204 -162131038 + L1PB1 LINE L1 4408 4982 -1169 2317 112 0 0 chr6 20284204 20284508 -162130734 + AluSc SINE Alu 1 304 -5 13166 182 10 8 chr6 20284508 20285667 -162129575 + L1PB1 LINE L1 4982 6151 0 21 71 0 0 chr6 20285667 20285709 -162129533 + AT_rich Low_complexity Low_complexity 1 42 0 1444 174 15 15 chr6 20285713 20285983 -162129259 - L1MB2 LINE L1 -370 5813 5544 1072 230 92 25 chr6 20285984 20286142 -162129100 - L1M4 LINE L1 -860 5220 5074 2065 84 7 31 chr6 20286142 20286428 -162128814 - AluY SINE Alu -5 306 28 1072 230 92 25 chr6 20286428 20286704 -162128538 - L1M4 LINE L1 -1006 5074 4757 7526 96 4 20 chr6 20286708 20287783 -162127459 + MER11C LTR ERVK 1 1057 -14 991 33 8 0 chr6 20287809 20287931 -162127311 - HERVK11 LTR ERVK -1522 6431 6309 1361 224 73 19 chr6 20287932 20288410 -162126832 - L1M4 LINE L1 -1325 4755 4252 2477 129 12 37 chr6 20288416 20288916 -162126326 - L1MA8 LINE L1 -2 6289 5823 1527 49 0 0 chr6 20288916 20289101 -162126141 - L1PA3 LINE L1 -3 6152 5968 2477 129 12 37 chr6 20289101 20289334 -162125908 - L1MA8 LINE L1 -468 5823 5586 * 3981 251 105 36 chr6 20289331 20289977 -162125265 - L1M4 LINE L1 -1820 4260 3660 1578 159 0 86 chr6 20289977 20290334 -162124908 - AluSx SINE Alu 0 312 1 3981 251 105 36 chr6 20290334 20291662 -162123580 - L1M4 LINE L1 -2420 3660 2150 714 299 77 22 chr6 20291688 20292324 -162122918 - L1M4 LINE L1 -4048 2032 1362 911 259 101 29 chr6 20292371 20293126 -162122116 - L1ME LINE L1 -4820 1260 465 301 333 30 61 chr6 20293852 20294050 -162121192 - L1ME LINE L1 -5877 193 2 22 35 0 0 chr6 20294138 20294167 -162121075 + AT_rich Low_complexity Low_complexity 1 29 0 180 184 0 0 chr6 20294167 20294216 -162121026 + (CAT)n Simple_repeat Simple_repeat 1 49 0 1293 276 78 18 chr6 20294460 20295079 -162120163 + MER20B DNA MER1_type 64 719 -64 2403 104 97 32 chr6 20295722 20295757 -162119485 + MSTA LTR MaLR 1 32 -396 2661 138 78 6 chr6 20295757 20296234 -162119008 - MER9 LTR ERVK 0 511 1 2403 104 97 32 chr6 20296234 20296600 -162118642 + MSTA LTR MaLR 32 428 0 182 136 23 0 chr6 20297942 20297986 -162117256 + T-rich Low_complexity Low_complexity 2 46 0 776 125 28 23 chr6 20299082 20299258 -162115984 + CT-rich Low_complexity Low_complexity 3 179 0 736 272 60 19 chr6 20299564 20299932 -162115310 - L1ME LINE L1 -436 5734 5352 6190 149 77 15 chr6 20300045 20301195 -162114047 + Tigger3b DNA MER2_type 2 1222 -9 260 158 18 0 chr6 20301242 20301299 -162113943 + CT-rich Low_complexity Low_complexity 3 60 0 254 264 80 8 chr6 20301351 20301476 -162113766 - L1ME LINE L1 -2074 4072 3939 2689 99 22 22 chr6 20301476 20301880 -162113362 + MLT2A1 LTR ERVL 1 404 -40 729 74 0 80 chr6 20301885 20302750 -162112492 + (TA)n Simple_repeat Simple_repeat 1 795 0 239 97 28 28 chr6 20302800 20302872 -162112370 + (TA)n Simple_repeat Simple_repeat 2 73 0 372 94 0 0 chr6 20302897 20302950 -162112292 + MLT2A1 LTR ERVL 392 444 0 475 304 105 25 chr6 20303034 20303133 -162112109 - L1ME LINE L1 -637 5525 5435 2151 131 0 0 chr6 20303133 20303438 -162111804 - AluSq SINE Alu -8 305 1 475 304 105 25 chr6 20303438 20304217 -162111025 - L1ME LINE L1 -727 5435 4565 198 0 0 0 chr6 20304488 20304510 -162110732 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 432 266 128 35 chr6 20304529 20304755 -162110487 + L1MC4a LINE L1 1456 1702 -4840 893 297 111 6 chr6 20304769 20305377 -162109865 + L1MC4a LINE L1 4214 4899 -1745 304 287 84 49 chr6 20305385 20305528 -162109714 + L1MC4a LINE L1 6217 6364 -1942 2337 147 76 0 chr6 20305613 20306007 -162109235 + MSTA LTR MaLR 1 424 -4 306 329 204 0 chr6 20306547 20306684 -162108558 - MER5A DNA MER1_type -21 168 4 1032 219 71 115 chr6 20306719 20307179 -162108063 - MER66A LTR ERV1 -10 520 96 982 199 0 0 chr6 20308442 20308598 -162106644 - FAM SINE Alu -19 156 1 252 376 43 0 chr6 20309311 20309473 -162105769 + MER117 DNA MER1_type 7 175 -22 3497 141 6 0 chr6 20309537 20310061 -162105181 + MER1A DNA MER1_type 1 527 0 800 163 0 0 chr6 20310091 20310214 -162105028 + FLAM_C SINE Alu 1 123 -20 234 151 38 0 chr6 20310214 20310267 -162104975 + (TA)n Simple_repeat Simple_repeat 1 55 0 713 183 7 14 chr6 20310279 20310421 -162104821 + AluJb SINE Alu 142 282 -30 411 312 89 32 chr6 20310846 20311093 -162104149 + MIR SINE MIR 2 262 0 280 295 0 71 chr6 20311249 20311361 -162103881 + MER5A DNA MER1_type 46 149 -40 262 181 14 14 chr6 20311883 20311955 -162103287 + CT-rich Low_complexity Low_complexity 5 76 0 2043 126 36 0 chr6 20311959 20312261 -162102981 - AluSq SINE Alu 0 313 1 1940 136 61 0 chr6 20312974 20313268 -162101974 - AluSx SINE Alu 0 312 1 360 325 70 24 chr6 20313372 20313670 -162101572 + L1ME4a LINE L1 5265 5576 -2232 330 143 0 0 chr6 20314617 20314680 -162100562 + (GA)n Simple_repeat Simple_repeat 2 64 0 23 68 0 0 chr6 20314764 20314808 -162100434 + AT_rich Low_complexity Low_complexity 1 44 0 1171 200 23 111 chr6 20315241 20315636 -162099606 - MLT1A1 LTR MaLR -3 362 3 279 271 113 6 chr6 20315664 20315841 -162099401 + L1ME4a LINE L1 5758 5953 -168 318 264 50 36 chr6 20315842 20315982 -162099260 + L1ME4a LINE L1 5978 6119 -2 311 270 0 102 chr6 20316010 20316147 -162099095 - MIR SINE MIR -24 238 116 1567 161 0 8 chr6 20316578 20316832 -162098410 - AluJb SINE Alu -15 297 46 408 270 68 55 chr6 20318674 20318837 -162096405 + MER91A DNA MER1_type 1 165 -31 236 298 0 35 chr6 20318840 20318897 -162096345 + MER91A DNA MER1_type 136 190 0 1067 343 64 5 chr6 20319540 20319980 -162095262 + LTR33 LTR ERVL 33 498 -23 3499 69 7 4 chr6 20321598 20322059 -162093183 + L1PA8 LINE L1 5709 6170 -2 342 368 118 35 chr6 20323443 20323791 -162091451 + L2 LINE L2 2841 3217 -55 2080 144 119 16 chr6 20323830 20324218 -162091024 + MSTA LTR MaLR 1 428 0 13485 17 0 0 chr6 20324669 20327017 -162088225 - L1HS LINE L1 -2 6153 3805 1646 30 0 0 chr6 20327014 20327212 -162088030 + L1HS LINE L1 3607 3804 -2342 * 2241 234 36 32 chr6 20328517 20329131 -162086111 - MER77 LTR ERV1 -4 601 79 213 39 0 0 chr6 20329328 20329354 -162085888 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr6 20329494 20329522 -162085720 + AT_rich Low_complexity Low_complexity 1 28 0 4812 214 73 22 chr6 20330420 20331760 -162083482 + Charlie1a DNA MER1_type 1 1409 -46 231 36 0 0 chr6 20331901 20331929 -162083313 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1414 215 8 4 chr6 20331936 20332196 -162083046 - AluJb SINE Alu -51 261 1 209 222 22 0 chr6 20333028 20333073 -162082169 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 291 71 0 0 chr6 20333869 20333911 -162081331 + (CA)n Simple_repeat Simple_repeat 2 43 0 15293 155 20 9 chr6 20336978 20342126 -162073116 - L1MA3 LINE L1 0 7724 2567 228 333 65 0 chr6 20342345 20342468 -162072774 - L1MC5 LINE L1 -519 7442 7312 3851 23 0 0 chr6 20342686 20343129 -162072113 - L1PA4 LINE L1 -59 6096 5654 411 65 0 0 chr6 20343129 20343190 -162072052 + L1PA3 LINE L1 6094 6155 0 462 36 0 0 chr6 20343565 20343621 -162071621 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 252 213 0 0 chr6 20343757 20343818 -162071424 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 515 43 14 0 chr6 20343848 20343918 -162071324 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1270 165 187 31 chr6 20344531 20344852 -162070390 - MLT1A2 LTR MaLR 0 374 4 677 103 10 0 chr6 20349090 20349187 -162066055 + MSTB1 LTR MaLR 335 432 0 316 235 31 10 chr6 20349280 20349378 -162065864 + MER103 DNA DNA 66 165 -1 293 288 182 24 chr6 20350109 20350279 -162064963 + MIR SINE MIR 45 241 -21 2716 98 3 5 chr6 20350315 20350691 -162064551 + THE1C LTR MaLR 1 375 0 198 0 0 0 chr6 20351301 20351323 -162063919 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 420 55 0 0 chr6 20351322 20351377 -162063865 + (TG)n Simple_repeat Simple_repeat 2 56 0 193 148 19 19 chr6 20351436 20351490 -162063752 + CT-rich Low_complexity Low_complexity 2 55 0 353 272 82 84 chr6 20352692 20353025 -162062217 - MLT1J1 LTR MaLR -71 375 20 293 298 12 0 chr6 20353550 20353634 -162061608 + L1ME LINE L1 5523 5607 -514 393 86 0 0 chr6 20353941 20353999 -162061243 + (T)n Simple_repeat Simple_repeat 1 58 0 2066 103 10 48 chr6 20354078 20354390 -162060852 - AluSq SINE Alu -13 300 1 2169 122 0 0 chr6 20356260 20356563 -162058679 - AluSx SINE Alu -5 307 5 213 343 0 0 chr6 20356708 20356775 -162058467 + L2 LINE L2 3247 3313 0 517 328 15 30 chr6 20357153 20357351 -162057891 - MIR SINE MIR -65 197 3 1273 149 61 105 chr6 20359235 20359530 -162055712 + AluJo SINE Alu 1 282 -30 210 319 112 35 chr6 20360382 20360498 -162054744 - MIR SINE MIR -46 216 92 285 375 65 5 chr6 20360697 20360881 -162054361 - L2 LINE L2 -209 3063 2869 588 286 50 14 chr6 20360881 20361101 -162054141 - MER102a DNA MER1_type -1 329 102 426 209 27 36 chr6 20361287 20361397 -162053845 + MIR3 SINE MIR 77 185 -23 1338 259 37 94 chr6 20361527 20362572 -162052670 + L1MEc LINE L1 2176 3121 -3094 3881 152 25 23 chr6 20362573 20362968 -162052274 - L1 LINE L1 -2242 3904 3506 1313 112 36 83 chr6 20362968 20363161 -162052081 - L1MA2 LINE L1 -1 6303 6125 1860 158 0 20 chr6 20363161 20363465 -162051777 - AluSx SINE Alu -10 302 5 1313 112 36 83 chr6 20363465 20363547 -162051695 - L1MA2 LINE L1 -179 6125 6041 3881 152 25 23 chr6 20363547 20363927 -162051315 - L1 LINE L1 -2640 3506 3128 3487 187 16 50 chr6 20363923 20364710 -162050532 + L1PA15 LINE L1 5400 6160 -5 * 360 0 0 0 chr6 20364732 20364772 -162050470 + (TA)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr6 20364773 20364812 -162050430 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 184 0 0 chr6 20364849 20364887 -162050355 + FLAM_A SINE Alu 1 38 -95 528 144 62 0 chr6 20364889 20364986 -162050256 + AluY SINE Alu 207 309 -2 2967 126 13 2 chr6 20364988 20365463 -162049779 + L1MA6 LINE L1 5821 6300 0 1268 268 78 12 chr6 20365496 20366253 -162048989 + L1ME2 LINE L1 4872 5677 -489 439 182 8 132 chr6 20366259 20366380 -162048862 - Tigger3(Golem) DNA MER2_type -1 3028 2923 255 239 127 0 chr6 20366491 20366505 -162048737 - Tigger3(Golem) DNA MER2_type -522 80 69 2180 34 8 0 chr6 20366505 20366772 -162048470 - L1PA4 LINE L1 -3 6152 5884 255 239 127 0 chr6 20366772 20366828 -162048414 - Tigger3(Golem) DNA MER2_type -533 69 1 1082 255 38 55 chr6 20366829 20367096 -162048146 + L1ME2 LINE L1 5689 5959 -205 1040 87 12 12 chr6 20367096 20367269 -162047973 + (GGAA)n Simple_repeat Simple_repeat 3 175 0 1082 255 38 55 chr6 20367269 20367280 -162047962 + L1ME2 LINE L1 5959 5969 -195 180 0 0 0 chr6 20367280 20367300 -162047942 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 1082 255 38 55 chr6 20367300 20367490 -162047752 + L1ME2 LINE L1 5969 6150 -14 478 222 0 0 chr6 20367574 20367673 -162047569 + FLAM_A SINE Alu 44 142 0 180 176 0 0 chr6 20367730 20367764 -162047478 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 468 203 80 11 chr6 20367862 20368049 -162047193 + L1ME2 LINE L1 4317 4516 -1630 * 1793 241 65 46 chr6 20368020 20368733 -162046509 + L1ME2 LINE L1 5366 6091 -73 826 311 109 45 chr6 20368752 20369626 -162045616 + L2 LINE L2 2358 3313 0 348 261 176 29 chr6 20369691 20370032 -162045210 - L1ME4a LINE L1 -4 6117 5727 431 216 86 35 chr6 20370032 20370148 -162045094 + MIR SINE MIR 127 248 -14 361 153 222 0 chr6 20371270 20371342 -162043900 - MER3 DNA MER1_type -108 101 14 33 43 0 0 chr6 20371684 20371731 -162043511 + AT_rich Low_complexity Low_complexity 1 47 0 348 24 0 0 chr6 20372519 20372560 -162042682 + (TAA)n Simple_repeat Simple_repeat 2 42 0 521 229 92 37 chr6 20372986 20373204 -162042038 - L1MC5 LINE L1 -36 7925 7696 425 233 111 33 chr6 20373217 20373397 -162041845 + L1MC5 LINE L1 7325 7518 -443 282 64 0 43 chr6 20373429 20373476 -162041766 + L1MC5 LINE L1 7603 7647 -314 264 59 0 0 chr6 20373723 20373757 -162041485 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 721 235 105 0 chr6 20374638 20374800 -162040442 - MER58A DNA MER1_type -35 189 11 2300 107 3 0 chr6 20374925 20375235 -162040007 - AluSp SINE Alu -2 311 1 277 217 0 0 chr6 20375251 20375297 -162039945 - L2 LINE L2 -27 3245 3200 182 338 14 0 chr6 20375667 20375738 -162039504 - L2 LINE L2 -527 2787 2716 1527 268 42 28 chr6 20377375 20377846 -162037396 - MER45C DNA AcHobo 0 953 476 946 213 99 116 chr6 20377847 20378280 -162036962 + LTR16A1 LTR ERVL 32 457 0 346 326 70 35 chr6 20378296 20378468 -162036774 - L2 LINE L2 -213 3100 2923 1774 228 45 45 chr6 20378510 20378979 -162036263 + MLT1D LTR MaLR 37 505 0 2619 277 106 25 chr6 20378979 20379028 -162036214 - L2 LINE L2 -378 2936 2892 2541 94 3 25 chr6 20379028 20379391 -162035851 - THE1A LTR MaLR 0 355 1 2619 277 106 25 chr6 20379391 20380419 -162034823 - L2 LINE L2 -422 2892 1772 1775 168 20 0 chr6 20380419 20380723 -162034519 - MLT2D LTR ERVL -104 310 1 35 24 0 0 chr6 20380746 20380788 -162034454 + AT_rich Low_complexity Low_complexity 1 42 0 7484 22 7 1 chr6 20380795 20381905 -162033337 - L1PA3 LINE L1 0 6155 5056 1236 288 156 13 chr6 20381928 20382564 -162032678 - L2 LINE L2 -1641 1673 947 1269 186 122 20 chr6 20382593 20382937 -162032305 + L1MC2 LINE L1 5942 6320 -24 2036 127 41 8 chr6 20383055 20383520 -162031722 + L1MA4A LINE L1 5137 5618 -682 2085 122 60 18 chr6 20383555 20383940 -162031302 + L1MA4A LINE L1 5899 6299 -4 488 326 60 18 chr6 20385220 20385502 -162029740 - L3b LINE CR1 -107 1476 1183 216 233 0 0 chr6 20385976 20386019 -162029223 - L2 LINE L2 -6 3307 3265 226 222 0 19 chr6 20386829 20386883 -162028359 - L2 LINE L2 -1 3271 3219 23 0 0 0 chr6 20387153 20387176 -162028066 + AT_rich Low_complexity Low_complexity 1 23 0 242 250 197 0 chr6 20387704 20387780 -162027462 + MIR3 SINE MIR 113 203 -5 215 386 20 20 chr6 20389683 20389784 -162025458 + L2 LINE L2 3171 3271 -1 2098 139 0 3 chr6 20390575 20390884 -162024358 + AluSg SINE Alu 1 308 -2 487 265 191 5 chr6 20390886 20391075 -162024167 + MIR SINE MIR 17 240 -22 182 264 161 23 chr6 20392184 20392271 -162022971 - L2 LINE L2 -5 3308 3210 408 288 38 23 chr6 20393995 20394127 -162021115 - MIR3 SINE MIR -21 187 54 344 264 157 0 chr6 20395180 20395320 -162019922 - MIR SINE MIR -10 252 91 464 282 74 31 chr6 20395330 20395493 -162019749 + MER91A DNA MER1_type 1 170 -26 185 167 0 7 chr6 20395894 20395928 -162019314 + L2 LINE L2 3216 3290 -23 289 296 72 56 chr6 20396160 20396285 -162018957 + L2 LINE L2 3137 3263 -9 2554 59 0 3 chr6 20397052 20397383 -162017859 - AluY SINE Alu 0 335 6 218 312 48 48 chr6 20398403 20398528 -162016714 + MIR3 SINE MIR 30 154 -54 2063 110 11 7 chr6 20398873 20399185 -162016057 - AluSx SINE Alu 0 313 1 270 231 62 69 chr6 20400750 20400910 -162014332 + MER103 DNA DNA 1 159 -7 852 175 75 0 chr6 20401213 20401373 -162013869 + MLT1B LTR MaLR 1 172 -218 248 262 0 0 chr6 20401451 20401512 -162013730 + MLT1K LTR MaLR 487 547 -41 995 216 5 20 chr6 20401635 20401834 -162013408 + MLT1B LTR MaLR 195 390 0 298 281 62 0 chr6 20402174 20402270 -162012972 + MLT1K LTR MaLR 487 588 0 368 274 5 99 chr6 20403003 20403204 -162012038 - L2 LINE L2 -5 3308 3127 1762 241 107 14 chr6 20403214 20403783 -162011459 + MLT2E LTR ERVL 7 628 0 213 336 40 24 chr6 20403792 20403917 -162011325 - L2 LINE L2 -191 3122 2996 276 30 0 0 chr6 20405050 20405083 -162010159 + (TC)n Simple_repeat Simple_repeat 2 34 0 766 176 0 23 chr6 20405083 20405214 -162010028 - FLAM_C SINE Alu -5 128 1 1127 104 203 5 chr6 20405785 20405977 -162009265 - MER30 DNA MER1_type 0 230 1 24 96 0 0 chr6 20406777 20406850 -162008392 + AT_rich Low_complexity Low_complexity 1 73 0 283 235 0 50 chr6 20407474 20407593 -162007649 + A-rich Low_complexity Low_complexity 2 114 0 630 204 43 81 chr6 20408020 20408206 -162007036 + L2 LINE L2 3135 3313 0 1292 122 23 14 chr6 20408457 20408671 -162006571 - L1MC1 LINE L1 -2 6331 6116 10345 191 15 66 chr6 20408671 20410832 -162004410 - L1PA15-16 LINE L1 -2612 4237 1969 599 137 10 0 chr6 20410832 20410934 -162004308 - AluSg/x SINE Alu -2 307 205 282 125 0 0 chr6 20410934 20410974 -162004268 - Alu SINE Alu -262 40 1 10345 191 15 66 chr6 20410974 20412000 -162003242 - L1PA15-16 LINE L1 -4878 1971 1071 2615 239 27 4 chr6 20412000 20412702 -162002540 - L1M4 LINE L1 -979 5167 4450 1158 230 32 68 chr6 20412702 20413167 -162002075 + MER74A LTR ERVL 2 528 -30 916 297 64 12 chr6 20413237 20413564 -162001678 + LTR16C LTR ERVL 99 442 -49 676 208 40 130 chr6 20413597 20413944 -162001298 - MLT1D LTR MaLR -50 455 21 304 85 0 21 chr6 20413972 20414019 -162001223 + LTR16C LTR ERVL 445 490 -1 324 198 72 18 chr6 20414955 20415122 -162000120 + (TA)n Simple_repeat Simple_repeat 2 177 0 419 282 76 0 chr6 20415148 20415279 -161999963 + MIR SINE MIR 105 245 -17 1881 256 42 19 chr6 20415743 20416285 -161998957 + MLT1H1 LTR MaLR 1 555 0 25 31 0 0 chr6 20416745 20416777 -161998465 + AT_rich Low_complexity Low_complexity 1 32 0 233 339 206 18 chr6 20417036 20417375 -161997867 + L2 LINE L2 2225 2627 -687 1981 271 70 44 chr6 20417555 20418620 -161996622 - L1ME3A LINE L1 -9 6161 5125 1681 194 3 7 chr6 20418620 20418913 -161996329 + AluJb SINE Alu 1 292 -20 1981 271 70 44 chr6 20418913 20419047 -161996195 - L1ME3A LINE L1 -1045 5125 4996 2612 52 0 0 chr6 20419047 20419356 -161995886 + AluY SINE Alu 3 311 0 1981 271 70 44 chr6 20419356 20419597 -161995645 - L1ME3A LINE L1 -1174 4996 4763 2256 103 0 3 chr6 20419597 20419899 -161995343 - AluSx SINE Alu -11 301 1 1981 271 70 44 chr6 20419899 20420105 -161995137 - L1ME3A LINE L1 -1407 4763 4469 345 400 63 44 chr6 20420159 20420558 -161994684 + L2 LINE L2 2835 3244 -28 1828 149 7 40 chr6 20420558 20420860 -161994382 + AluJo SINE Alu 1 292 -20 345 400 63 44 chr6 20420860 20420890 -161994352 + L2 LINE L2 3244 3272 0 235 309 107 62 chr6 20421107 20421285 -161993957 + MER5A DNA MER1_type 2 187 -2 309 26 0 0 chr6 20421846 20421884 -161993358 + (TG)n Simple_repeat Simple_repeat 2 39 0 577 228 64 29 chr6 20423267 20423438 -161991804 - MER5B DNA MER1_type 0 178 2 419 242 59 113 chr6 20423454 20423640 -161991602 + MER5B DNA MER1_type 1 176 -2 342 333 41 20 chr6 20424271 20424466 -161990776 - MIR SINE MIR -30 232 34 1606 210 100 30 chr6 20425299 20425771 -161989471 - MLT1D LTR MaLR 0 505 1 696 267 78 62 chr6 20427355 20427613 -161987629 + MLT1H LTR MaLR 1 262 -287 1012 277 139 7 chr6 20427714 20428417 -161986825 + L1ME1 LINE L1 1949 2702 -3513 1447 249 121 14 chr6 20428428 20428461 -161986781 + L1ME1 LINE L1 5601 5629 -606 414 0 0 0 chr6 20428461 20428507 -161986735 + (TA)n Simple_repeat Simple_repeat 2 47 0 2121 111 3 3 chr6 20428517 20428806 -161986436 - AluSg SINE Alu -21 289 1 1447 249 121 14 chr6 20428806 20429334 -161985908 + L1ME1 LINE L1 5637 6207 -28 340 336 14 42 chr6 20429884 20430027 -161985215 - L2 LINE L2 -944 2370 2232 246 62 0 0 chr6 20430365 20430397 -161984845 + (CA)n Simple_repeat Simple_repeat 2 33 0 714 268 61 58 chr6 20432673 20432986 -161982256 - MER102a DNA MER1_type -16 314 1 260 270 16 0 chr6 20433029 20433092 -161982150 + GA-rich Low_complexity Low_complexity 1 64 0 1838 84 26 4 chr6 20433123 20433396 -161981846 - L1MA1 LINE L1 0 6302 6024 340 283 9 0 chr6 20433559 20433665 -161981577 - L1M4 LINE L1 -1155 4991 4885 358 122 40 0 chr6 20433748 20433822 -161981420 + GA-rich Low_complexity Low_complexity 1 77 0 277 250 134 0 chr6 20433824 20433936 -161981306 - L1M4 LINE L1 -1316 4830 4704 1467 269 65 11 chr6 20434070 20434590 -161980652 + L1ME3A LINE L1 5615 6162 -8 296 100 0 20 chr6 20434950 20435000 -161980242 + (TTTCC)n Simple_repeat Simple_repeat 2 50 0 391 339 94 29 chr6 20435665 20435910 -161979332 - LTR16C LTR ERVL -110 381 121 314 356 43 12 chr6 20436126 20436289 -161978953 + MER5A DNA MER1_type 17 184 -5 201 129 0 0 chr6 20437386 20437417 -161977825 + (GA)n Simple_repeat Simple_repeat 2 32 0 225 132 0 0 chr6 20437794 20437832 -161977410 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2955 128 43 63 chr6 20437835 20438373 -161976869 + MER1A DNA MER1_type 1 527 0 354 257 180 11 chr6 20438690 20438873 -161976369 - L1ME3A LINE L1 -321 5849 5636 1146 180 31 0 chr6 20438873 20439067 -161976175 - MER20 DNA MER1_type 0 219 20 705 277 88 20 chr6 20439068 20439538 -161975704 - L1ME3A LINE L1 -518 5644 5146 24 77 0 0 chr6 20439538 20439590 -161975652 + AT_rich Low_complexity Low_complexity 1 52 0 837 246 22 18 chr6 20439663 20439891 -161975351 + MLT1F LTR MaLR 143 371 -171 631 174 0 9 chr6 20439910 20440019 -161975223 + MLT1A1 LTR MaLR 42 149 -216 441 215 47 67 chr6 20440007 20440156 -161975086 + MLT1F LTR MaLR 422 567 0 * 267 271 33 74 chr6 20440955 20441077 -161974165 + MIR3 SINE MIR 87 203 -5 225 0 0 0 chr6 20441097 20441122 -161974120 + (A)n Simple_repeat Simple_repeat 1 25 0 1471 226 22 38 chr6 20441294 20441505 -161973737 + MLT1A1 LTR MaLR 1 205 -160 1878 150 0 33 chr6 20441505 20441805 -161973437 - AluJo SINE Alu -22 290 1 1471 226 22 38 chr6 20441805 20441964 -161973278 + MLT1A1 LTR MaLR 205 365 0 2347 111 0 0 chr6 20443200 20443506 -161971736 - AluSg SINE Alu -4 306 1 195 261 136 23 chr6 20443877 20443965 -161971277 + MIR3 SINE MIR 103 200 -8 521 190 26 113 chr6 20443978 20444173 -161971069 + MER104 DNA MER2_type 2 179 -1 342 220 53 83 chr6 20444686 20444818 -161970424 - L2 LINE L2 -216 3056 2929 2217 124 0 9 chr6 20444915 20445230 -161970012 - AluSq SINE Alu -1 312 1 624 163 255 0 chr6 20445638 20445791 -161969451 + L1M4 LINE L1 2330 2521 -3625 575 341 143 19 chr6 20445915 20446340 -161968902 + MLT1K LTR MaLR 97 574 -14 364 309 12 49 chr6 20451065 20451227 -161964015 + MIR SINE MIR 3 158 -104 1261 244 15 66 chr6 20451240 20451634 -161963608 - MLT1A2 LTR MaLR 0 374 1 3341 195 32 9 chr6 20451634 20452264 -161962978 - MER82 DNA MER2_type -9 644 1 1487 204 56 36 chr6 20452331 20452435 -161962807 - MLT1A1 LTR MaLR 0 365 265 2448 124 53 17 chr6 20452435 20452847 -161962395 + MSTA LTR MaLR 1 427 -1 1487 204 56 36 chr6 20452847 20453100 -161962142 - MLT1A1 LTR MaLR -100 265 1 599 248 94 20 chr6 20453760 20453962 -161961280 + MIR SINE MIR 15 231 -31 293 276 134 65 chr6 20454252 20454513 -161960729 - MLT1I LTR MaLR -10 399 121 272 345 11 11 chr6 20454743 20454830 -161960412 - L2 LINE L2 -45 3227 3141 188 329 157 0 chr6 20454920 20454990 -161960252 + MIR SINE MIR 32 112 -150 318 26 0 0 chr6 20454993 20455032 -161960210 + (TG)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr6 20455032 20455059 -161960183 + (CA)n Simple_repeat Simple_repeat 2 28 0 1278 173 145 9 chr6 20455065 20455383 -161959859 + MER46B DNA MER2_type 1 236 0 207 0 0 0 chr6 20457383 20457406 -161957836 + (CA)n Simple_repeat Simple_repeat 2 24 0 225 329 35 0 chr6 20457417 20457502 -161957740 + MIR3 SINE MIR 100 187 -21 225 0 0 0 chr6 20458585 20458610 -161956632 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 5800 145 41 14 chr6 20458639 20459678 -161955564 - L1MC1 LINE L1 -2 6611 5544 478 231 0 38 chr6 20459786 20459972 -161955270 + (TTATA)n Simple_repeat Simple_repeat 2 180 0 7702 245 46 20 chr6 20460045 20460675 -161954567 - L1MC1 LINE L1 -890 5536 4924 2234 99 0 34 chr6 20460675 20460997 -161954245 - AluY SINE Alu 0 311 1 7702 245 46 20 chr6 20460997 20463186 -161952056 - L1MC1 LINE L1 -1502 4924 2551 468 0 0 0 chr6 20463186 20463238 -161952004 + (TG)n Simple_repeat Simple_repeat 2 53 0 7702 245 46 20 chr6 20463238 20463613 -161951629 - L1MC1 LINE L1 -3875 2551 2187 1247 183 32 67 chr6 20463645 20464027 -161951215 + MLT1A1 LTR MaLR 4 428 0 1668 144 32 16 chr6 20464027 20464510 -161950732 - L1MC1 LINE L1 -4418 2008 1425 836 355 27 34 chr6 20464519 20464961 -161950281 + L1PA15 LINE L1 788 1226 -6348 11450 239 26 23 chr6 20465612 20465822 -161949420 + L1PA15 LINE L1 2237 2445 -5139 973 18 0 0 chr6 20465822 20465932 -161949310 + L1PA2 LINE L1 6034 6143 -12 207 0 0 0 chr6 20465935 20465958 -161949284 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 11450 239 26 23 chr6 20465958 20466522 -161948720 + L1PA15 LINE L1 2446 3007 -4577 2671 132 24 5 chr6 20466522 20466939 -161948303 - MSTA LTR MaLR -3 425 1 11450 239 26 23 chr6 20466939 20470083 -161945159 + L1PA15 LINE L1 3007 6165 -1419 1360 165 114 22 chr6 20470083 20470356 -161944886 + MSTA LTR MaLR 1 298 -130 5474 168 16 6 chr6 20470377 20471742 -161943500 + L1PA15 LINE L1 6178 7556 -47 3506 109 35 11 chr6 20471742 20472308 -161942934 + L1MA3 LINE L1 5726 6305 0 5474 168 16 6 chr6 20472308 20472354 -161942888 + L1PA15 LINE L1 7556 7600 -3 2156 193 12 14 chr6 20472558 20472972 -161942270 - L1MCa LINE L1 -5973 453 41 21 0 0 0 chr6 20473729 20473750 -161941492 + AT_rich Low_complexity Low_complexity 1 21 0 454 309 18 30 chr6 20474149 20474317 -161940925 - MER5B DNA MER1_type -12 166 1 240 154 13 90 chr6 20474846 20474924 -161940318 + L1MC4 LINE L1 6650 6721 -1321 732 172 8 15 chr6 20474983 20475117 -161940125 - FLAM_C SINE Alu 0 133 1 3698 145 31 9 chr6 20475849 20476503 -161938739 - L1MC1 LINE L1 -2 6331 5664 5760 62 1 5 chr6 20476504 20477250 -161937992 - L1PA8 LINE L1 -2 6170 5428 245 163 0 0 chr6 20477251 20477294 -161937948 - L1MC1 LINE L1 -684 5660 5618 463 246 49 49 chr6 20478234 20478437 -161936805 + MLT1J LTR MaLR 300 502 -9 1444 180 3 84 chr6 20478639 20478962 -161936280 - AluJo SINE Alu -15 297 1 248 272 25 0 chr6 20479379 20479460 -161935782 + L1MA9 LINE L1 6192 6274 -38 201 316 18 0 chr6 20479602 20479659 -161935583 + L2 LINE L2 3254 3311 -2 696 222 23 77 chr6 20480520 20480741 -161934501 + MER63A DNA MER1_type 1 209 -1 1664 182 12 87 chr6 20482539 20482941 -161932301 - MLT1A2 LTR MaLR 0 374 3 470 315 67 17 chr6 20483388 20483566 -161931676 - MIR3 SINE MIR -21 187 1 26 0 0 0 chr6 20485035 20485061 -161930181 + AT_rich Low_complexity Low_complexity 1 26 0 1064 238 135 81 chr6 20485363 20486485 -161928757 + HAL1b LINE L1 105 1286 -62 1564 192 76 38 chr6 20486706 20487128 -161928114 + L1MA4 LINE L1 13 450 -7115 11514 197 62 34 chr6 20487130 20488966 -161926276 + L1MA4 LINE L1 2007 3792 -3927 2272 146 72 12 chr6 20488966 20489370 -161925872 + MSTA LTR MaLR 1 428 0 11514 197 62 34 chr6 20489370 20490628 -161924614 + L1MA4 LINE L1 3792 5014 -2705 2455 87 0 0 chr6 20490628 20490939 -161924303 + AluY SINE Alu 1 311 0 11514 197 62 34 chr6 20490939 20493316 -161921926 + L1MA4 LINE L1 5014 7718 -1 226 306 28 0 chr6 20493645 20493717 -161921525 - MLT1I LTR MaLR -2 407 334 2463 49 0 20 chr6 20493760 20494066 -161921176 + AluY SINE Alu 1 300 -11 336 315 92 45 chr6 20494067 20494176 -161921066 - MLT1J2 LTR MaLR -128 322 220 1915 151 39 21 chr6 20494176 20494507 -161920735 + MER1B DNA MER1_type 1 337 0 336 315 92 45 chr6 20494507 20494689 -161920553 - MLT1J2 LTR MaLR -230 220 17 3568 232 68 51 chr6 20495011 20496280 -161918962 + L1MB7 LINE L1 3360 4649 -1497 3242 188 113 32 chr6 20496279 20497391 -161917851 + L1MB7 LINE L1 4963 6153 -31 * 21 57 0 0 chr6 20497680 20497715 -161917527 + AT_rich Low_complexity Low_complexity 1 35 0 600 347 34 18 chr6 20498780 20499034 -161916208 - MIR SINE MIR 0 262 6 27 29 0 0 chr6 20503005 20503039 -161912203 + AT_rich Low_complexity Low_complexity 1 34 0 545 333 139 17 chr6 20503360 20503900 -161911342 - L2 LINE L2 -22 3291 2682 1691 238 62 34 chr6 20504047 20504624 -161910618 + L1ME3 LINE L1 5572 6161 -1 572 253 159 20 chr6 20504800 20505045 -161910197 - HAL1 LINE L1 -832 1675 1397 1160 210 81 23 chr6 20505057 20505616 -161909626 - MLT1E1 LTR MaLR -3 651 2 2124 100 19 23 chr6 20505635 20505977 -161909265 - AluSc SINE Alu 0 341 1 21 0 0 0 chr6 20506156 20506177 -161909065 + AT_rich Low_complexity Low_complexity 1 21 0 367 279 174 40 chr6 20506303 20506579 -161908663 - HAL1 LINE L1 -1385 1122 810 1503 172 16 62 chr6 20506763 20507083 -161908159 - AluJo SINE Alu -7 305 1 183 309 111 12 chr6 20508460 20508541 -161906701 + MIR SINE MIR 23 111 -151 207 277 0 0 chr6 20508613 20508660 -161906582 + MIR SINE MIR 216 262 0 2008 208 92 45 chr6 20508739 20509375 -161905867 - MLT1E2 LTR MaLR -3 623 2 264 281 115 10 chr6 20509789 20509885 -161905357 - MIR SINE MIR -111 151 46 23 68 0 0 chr6 20510307 20510351 -161904891 + AT_rich Low_complexity Low_complexity 1 44 0 2399 51 0 38 chr6 20510539 20510853 -161904389 + AluY SINE Alu 1 302 -9 1505 166 3 108 chr6 20511202 20511545 -161903697 - AluJo SINE Alu -5 307 1 720 269 115 8 chr6 20511603 20511837 -161903405 - MIR SINE MIR -2 260 2 901 235 4 25 chr6 20512031 20512269 -161902973 + MER106A DNA MER1_type 1 233 -3 2515 164 31 0 chr6 20512956 20513407 -161901835 - LTR40c LTR ERVL 0 465 1 1438 191 12 8 chr6 20513707 20513964 -161901278 + AluJo SINE Alu 35 292 -20 23 54 0 0 chr6 20514274 20514311 -161900931 + AT_rich Low_complexity Low_complexity 1 37 0 343 269 149 0 chr6 20516440 20516574 -161898668 - L2 LINE L2 -1 3312 3159 3295 246 78 99 chr6 20516779 20517717 -161897525 + L1MB7 LINE L1 1360 2316 -5180 2140 114 0 29 chr6 20517717 20518033 -161897209 + AluSc SINE Alu 3 309 0 3295 246 78 99 chr6 20518033 20518087 -161897155 + L1MB7 LINE L1 2316 2370 -5126 193 29 29 29 chr6 20518087 20518122 -161897120 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3295 246 78 99 chr6 20518122 20518721 -161896521 + L1MB7 LINE L1 2370 2919 -4577 725 210 18 6 chr6 20518716 20518883 -161896359 + L1P LINE L1 3371 3539 -2607 * 4283 182 5 13 chr6 20518883 20519724 -161895518 + L1P LINE L1 3754 4587 -1559 21 36 0 0 chr6 20519724 20519752 -161895490 + AT_rich Low_complexity Low_complexity 1 28 0 5822 59 8 1 chr6 20519752 20520495 -161894747 - L1PA7 LINE L1 -4 6150 5403 1516 228 59 17 chr6 20520497 20520905 -161894337 + L1MB7 LINE L1 2981 3405 -4161 1551 223 41 31 chr6 20520912 20521570 -161893672 + L1MB7 LINE L1 3308 3980 -3585 2247 157 36 38 chr6 20521591 20522094 -161893148 - L1MA7 LINE L1 -7 6488 5987 236 278 22 22 chr6 20522152 20522242 -161893000 - L1MC4 LINE L1 -1339 6703 6614 189 107 0 0 chr6 20522270 20522298 -161892944 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 227 130 43 0 chr6 20522299 20522345 -161892897 - LTR66 LTR ERVL -171 439 392 7859 190 23 26 chr6 20522439 20522460 -161892782 - L1MA7 LINE L1 -498 5997 5977 183 80 0 0 chr6 20522460 20522485 -161892757 + (CA)n Simple_repeat Simple_repeat 2 26 0 7859 190 23 26 chr6 20522485 20523107 -161892135 - L1MA7 LINE L1 -518 5977 5355 387 105 0 0 chr6 20523107 20523164 -161892078 + (TG)n Simple_repeat Simple_repeat 2 58 0 7859 190 23 26 chr6 20523164 20523901 -161891341 - L1MA7 LINE L1 -1140 5355 4617 6193 87 25 14 chr6 20523901 20524538 -161890704 + L1PA10 LINE L1 4850 5479 -689 2075 148 0 0 chr6 20524538 20524836 -161890406 + AluSx SINE Alu 1 298 -14 6193 87 25 14 chr6 20524836 20525506 -161889736 + L1PA10 LINE L1 5479 6167 -1 7859 190 23 26 chr6 20525506 20526313 -161888929 - L1MA7 LINE L1 -1878 4617 3818 2279 228 22 17 chr6 20526304 20527066 -161888176 - L1MA7 LINE L1 -3337 3013 2247 * 242 229 14 0 chr6 20527068 20527138 -161888104 + CT-rich Low_complexity Low_complexity 1 71 0 871 122 6 33 chr6 20527148 20527329 -161887913 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1696 146 15 0 chr6 20527347 20527621 -161887621 - AluJb SINE Alu -34 278 1 3096 303 72 41 chr6 20527624 20530130 -161885112 - L1MA7 LINE L1 -4066 2284 53 8625 194 34 27 chr6 20530227 20530980 -161884262 + L1MB7 LINE L1 3966 4713 -2852 6549 76 18 1 chr6 20530980 20532439 -161882803 + L1PA10 LINE L1 4678 6154 -14 8625 194 34 27 chr6 20532439 20533727 -161881515 + L1MB7 LINE L1 4713 6020 -1545 280 254 8 57 chr6 20533721 20533843 -161881399 + L1MC4 LINE L1 6589 6704 -1338 * 291 119 45 0 chr6 20533844 20533911 -161881331 + (TA)n Simple_repeat Simple_repeat 1 70 0 230 190 17 0 chr6 20533952 20534010 -161881232 - L1MCa LINE L1 -4362 2064 2006 533 160 84 0 chr6 20534141 20534260 -161880982 + L1MB7 LINE L1 6015 6143 -1422 347 207 186 41 chr6 20534327 20534472 -161880770 + L1MEc LINE L1 2184 2349 -4047 2328 158 109 23 chr6 20534490 20535014 -161880228 - LTR49 LTR ERV1 -26 569 1 887 274 94 34 chr6 20535016 20535601 -161879641 + L1MEc LINE L1 2308 2927 -3288 263 165 107 58 chr6 20535909 20536012 -161879230 + LTR26 LTR ERV1 465 572 -31 259 243 45 9 chr6 20536058 20536169 -161879073 + L1MEc LINE L1 2890 3004 -3211 1627 263 21 24 chr6 20536170 20536809 -161878433 + L1MC1 LINE L1 1469 2248 -4315 2567 213 46 15 chr6 20536831 20537582 -161877660 + L1MB7 LINE L1 6568 7345 -258 286 284 29 10 chr6 20537582 20537684 -161877558 - MER94 DNA DNA -30 104 1 3042 45 3 0 chr6 20538581 20538956 -161876286 + L1PA8 LINE L1 5795 6170 -2 5492 188 32 11 chr6 20539579 20541182 -161874060 + L1MC1 LINE L1 4930 6564 -5 1411 82 0 0 chr6 20541618 20541802 -161873440 + AluY SINE Alu 124 307 -4 3764 173 102 98 chr6 20541839 20542352 -161872890 + L1MC3 LINE L1 6335 6845 -940 180 0 0 0 chr6 20542352 20542372 -161872870 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3764 173 102 98 chr6 20542372 20542578 -161872664 + L1MC3 LINE L1 6845 7049 -736 324 287 0 10 chr6 20542578 20542679 -161872563 + MLT1F1 LTR MaLR 26 125 -442 3764 173 102 98 chr6 20542679 20543011 -161872231 + L1MC3 LINE L1 7049 7495 -290 2031 148 0 6 chr6 20543011 20543322 -161871920 + AluSg SINE Alu 2 310 0 3764 173 102 98 chr6 20543322 20543521 -161871721 + L1MC3 LINE L1 7495 7692 -93 691 210 0 21 chr6 20543499 20543642 -161871600 + L1MC3 LINE L1 7207 7346 -439 * 381 119 95 24 chr6 20543648 20543732 -161871510 + L1MC2 LINE L1 6255 6344 0 12221 20 1 0 chr6 20544122 20545553 -161869689 + L1P LINE L1 3370 4801 -1345 488 260 11 14 chr6 20595768 20595879 -161819363 - MER5A DNA MER1_type 0 189 67 2256 107 0 7 chr6 20595879 20596178 -161819064 + AluSx SINE Alu 1 297 -15 488 260 11 14 chr6 20596178 20596209 -161819033 - MER5A DNA MER1_type -122 67 37 1904 162 0 7 chr6 20597708 20597992 -161817250 + AluJb SINE Alu 1 282 -30 287 253 55 28 chr6 20598065 20598247 -161816995 - L1ME4a LINE L1 0 6121 5935 611 281 151 54 chr6 20598559 20599068 -161816174 - L2 LINE L2 0 3313 2855 186 43 0 0 chr6 20599068 20599091 -161816151 + (GAAAA)n Simple_repeat Simple_repeat 5 27 0 611 281 151 54 chr6 20599091 20599171 -161816071 - L2 LINE L2 -458 2855 1893 523 186 144 121 chr6 20599860 20600124 -161815118 - LTR16C LTR ERVL 0 491 222 374 237 47 39 chr6 20600581 20600756 -161814486 - MLT1I LTR MaLR -4 405 244 1297 202 130 55 chr6 20600844 20601350 -161813892 - LTR10B LTR ERV1 -3 544 1 306 155 113 0 chr6 20601392 20601463 -161813779 - MLT1J2 LTR MaLR -305 145 67 326 346 39 0 chr6 20601756 20601860 -161813382 - MIR3 SINE MIR -48 160 53 298 330 104 0 chr6 20602536 20602642 -161812600 + MIR3 SINE MIR 89 205 -3 357 305 98 98 chr6 20602937 20603219 -161812023 - L2 LINE L2 -3 3269 2985 2373 103 3 0 chr6 20603219 20603521 -161811721 + AluSp SINE Alu 1 303 -10 357 305 98 98 chr6 20603521 20603553 -161811689 - L2 LINE L2 -286 2986 2955 616 254 87 0 chr6 20603594 20603767 -161811475 + MIR SINE MIR 63 250 -12 459 306 23 68 chr6 20603791 20604056 -161811186 - L2 LINE L2 -823 2491 2239 1368 99 0 11 chr6 20604224 20604406 -161810836 - AluSc SINE Alu 0 309 130 213 39 0 0 chr6 20604530 20604556 -161810686 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr6 20604750 20604773 -161810469 + AT_rich Low_complexity Low_complexity 1 23 0 1379 135 13 9 chr6 20605440 20605669 -161809573 + MSTA LTR MaLR 187 416 -12 2403 52 0 3 chr6 20605692 20605982 -161809260 - AluY SINE Alu -22 289 1 430 288 16 47 chr6 20606402 20606722 -161808520 + L1MEd LINE L1 1019 1328 -4877 1035 305 76 49 chr6 20607402 20607896 -161807346 + L1MEd LINE L1 2213 2702 -3513 1601 186 13 26 chr6 20607896 20608202 -161807040 + AluJo SINE Alu 5 306 -6 1035 305 76 49 chr6 20608202 20608593 -161806649 + L1MEd LINE L1 2702 3081 -3134 519 267 64 30 chr6 20608750 20608952 -161806290 + LTR33 LTR ERVL 301 509 -12 24 0 0 0 chr6 20609327 20609351 -161805891 + AT_rich Low_complexity Low_complexity 1 24 0 292 256 45 77 chr6 20612283 20612439 -161802803 - MIR SINE MIR -72 190 40 385 264 0 0 chr6 20613906 20613993 -161801249 - Tigger5 DNA MER2_type 0 2323 2237 265 204 19 0 chr6 20614003 20614057 -161801185 - Tigger5 DNA MER2_type -2268 55 1 343 284 83 89 chr6 20617303 20617365 -161797877 + HAL1b LINE L1 83 144 -1204 2068 165 0 0 chr6 20617365 20617674 -161797568 + AluSx SINE Alu 1 309 -3 343 284 83 89 chr6 20617674 20618641 -161796601 + HAL1b LINE L1 144 1106 -242 5878 141 11 3 chr6 20618663 20619356 -161795886 - L1PA13 LINE L1 0 6814 6128 2342 104 7 0 chr6 20619356 20619665 -161795577 + AluSq SINE Alu 1 311 -2 5878 141 11 3 chr6 20619665 20622074 -161793168 - L1PA13 LINE L1 -686 6128 3510 2218 116 41 36 chr6 20622074 20622436 -161792806 - THE1B LTR MaLR 0 364 1 8877 112 112 2 chr6 20622436 20623860 -161791382 - THE1B-int LTR MaLR 0 1580 1 2137 114 44 39 chr6 20623860 20624220 -161791022 - THE1B LTR MaLR 0 364 3 9893 207 54 12 chr6 20624223 20627505 -161787737 - L1PA13 LINE L1 -3284 3513 79 1998 234 56 34 chr6 20627551 20628232 -161787010 - L1ME1 LINE L1 0 6166 5471 1745 193 3 6 chr6 20628256 20628567 -161786675 + AluJb SINE Alu 3 312 0 2300 160 14 17 chr6 20628583 20628996 -161786246 + L1PA16 LINE L1 5746 6157 -9 310 229 121 60 chr6 20629036 20629050 -161786192 + HAL1b LINE L1 1171 1183 -165 194 0 39 0 chr6 20629050 20629076 -161786166 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 310 229 121 60 chr6 20629076 20629227 -161786015 + HAL1b LINE L1 1183 1346 -2 238 316 0 0 chr6 20629257 20629352 -161785890 - L1ME LINE L1 -303 5818 5724 300 342 58 32 chr6 20629410 20629565 -161785677 - L1ME LINE L1 -515 5606 5448 5721 128 16 0 chr6 20629653 20630658 -161784584 - L1PA15 LINE L1 -7 6158 5155 4305 208 84 18 chr6 20630658 20631606 -161783636 - L1PA13 LINE L1 -4550 2237 1200 2118 131 137 13 chr6 20631606 20631987 -161783255 + MSTA LTR MaLR 1 428 0 4305 208 84 18 chr6 20631987 20632172 -161783070 - L1PA13 LINE L1 -5587 1200 1029 1707 254 16 70 chr6 20632493 20633165 -161782077 - L1PA13 LINE L1 -5871 916 281 4190 205 65 13 chr6 20633170 20633905 -161781337 - L1MC3 LINE L1 -743 5403 5491 1330 142 93 123 chr6 20633905 20634369 -161780873 + LTR7 LTR ERV1 1 450 0 4190 205 65 13 chr6 20634369 20635060 -161780182 - L1MC3 LINE L1 -654 5492 4839 1073 258 56 20 chr6 20635066 20635461 -161779781 - L1MCb LINE L1 -5596 449 41 1664 127 79 17 chr6 20635464 20635839 -161779403 - LTR7 LTR ERV1 0 450 1 2085 84 87 3 chr6 20636604 20636890 -161778352 - AluY SINE Alu -1 310 1 21 82 0 0 chr6 20636890 20636939 -161778303 + AT_rich Low_complexity Low_complexity 1 49 0 415 264 61 61 chr6 20637288 20637451 -161777791 + MIR SINE MIR 100 262 0 332 221 108 64 chr6 20637469 20637673 -161777569 + L2 LINE L2 3049 3261 -52 335 218 73 57 chr6 20637750 20637874 -161777368 - L1ME4a LINE L1 -42 6079 5954 309 303 148 7 chr6 20637879 20638034 -161777208 - L1ME4a LINE L1 -204 5917 5741 356 289 175 0 chr6 20638103 20638217 -161777025 - L2 LINE L2 0 3313 3180 206 389 46 28 chr6 20639405 20639513 -161775729 - L2 LINE L2 0 3272 3163 24 0 0 0 chr6 20640033 20640057 -161775185 + AT_rich Low_complexity Low_complexity 1 24 0 2922 156 35 22 chr6 20640254 20640793 -161774449 + MER44D DNA MER2_type 4 604 -1 23 54 0 0 chr6 20641306 20641343 -161773899 + AT_rich Low_complexity Low_complexity 1 37 0 254 331 225 0 chr6 20641839 20642008 -161773234 - MIR SINE MIR -51 211 5 41419 42 4 3 chr6 20642188 20648340 -161766902 + L1PA4 LINE L1 3 6155 0 252 0 0 0 chr6 20648458 20648486 -161766756 + (A)n Simple_repeat Simple_repeat 1 28 0 437 259 189 5 chr6 20648559 20648771 -161766471 - MIR SINE MIR -1 261 11 630 254 82 37 chr6 20649371 20649725 -161765517 - L1MC4a LINE L1 -1865 5943 5574 315 259 85 37 chr6 20649953 20650142 -161765100 - L1MC4a LINE L1 -2260 5548 5351 1257 329 114 29 chr6 20650624 20651188 -161764054 - L1MC4a LINE L1 -1712 4434 3920 4453 172 29 16 chr6 20651188 20652099 -161763143 - L1MA10 LINE L1 -7 6327 5406 1257 329 114 29 chr6 20652099 20652683 -161762559 - L1MC4a LINE L1 -2226 3920 3188 820 285 88 0 chr6 20652724 20652987 -161762255 - MER58 DNA MER1_type -54 2366 2 515 301 49 24 chr6 20654879 20655125 -161760117 - MLT1I LTR MaLR -1 408 157 1508 228 55 36 chr6 20655782 20656409 -161758833 + L1MCc LINE L1 993 1634 -4851 782 173 7 0 chr6 20656409 20656548 -161758694 - MLT1B LTR MaLR 0 390 251 2982 258 73 22 chr6 20656604 20659038 -161756204 + L1MCc LINE L1 1647 4375 -2566 2676 287 58 14 chr6 20659077 20659973 -161755269 + L1M4b LINE L1 13 947 -5912 23565 144 24 39 chr6 20659985 20664708 -161750534 + L1PA8 LINE L1 12 4661 -1485 6749 68 7 6 chr6 20664708 20665979 -161749263 + L1PA8 LINE L1 4909 6161 -11 2074 246 75 46 chr6 20665996 20667583 -161747659 + L1M4b LINE L1 936 2703 -4435 430 204 53 9 chr6 20667846 20667959 -161747283 + L1M4 LINE L1 1446 1563 -5292 2302 83 0 23 chr6 20668006 20668308 -161746934 + AluY SINE Alu 1 295 -16 41726 41 2 1 chr6 20668308 20674452 -161740790 + L1PA4 LINE L1 2 6152 -3 1588 250 62 50 chr6 20674486 20675014 -161740228 + L1M4 LINE L1 1642 2162 -4795 2266 116 0 0 chr6 20675014 20675325 -161739917 + AluSx SINE Alu 1 311 -1 1588 250 62 50 chr6 20675325 20676437 -161738805 + L1M4 LINE L1 2162 3383 -3574 1269 209 28 56 chr6 20676439 20676869 -161738373 - L1M4 LINE L1 -3127 3019 2602 * 1326 221 26 5 chr6 20676867 20677248 -161737994 + L1M4 LINE L1 4200 4588 -2369 831 211 67 61 chr6 20677245 20677367 -161737875 + L1MD3 LINE L1 7680 7800 -195 * 1976 117 0 38 chr6 20677367 20677708 -161737534 + AluSg SINE Alu 1 330 0 831 211 67 61 chr6 20677708 20677896 -161737346 + L1MD3 LINE L1 7800 7993 -2 251 239 0 54 chr6 20678012 20678104 -161737138 + L1ME3A LINE L1 6026 6112 -58 891 296 110 27 chr6 20678490 20679037 -161736205 - MLT1L LTR MaLR -13 602 11 266 229 90 35 chr6 20679087 20679231 -161736011 - L1M4 LINE L1 -2079 4067 3916 464 290 46 10 chr6 20680330 20680550 -161734692 - L1MC/D LINE L1 -460 5661 5468 272 333 80 26 chr6 20681900 20682365 -161732877 + HAL1 LINE L1 1171 1660 -847 231 341 111 8 chr6 20683535 20683661 -161731581 + MIR3 SINE MIR 62 200 -8 814 252 33 19 chr6 20684065 20684275 -161730967 - MIR SINE MIR -10 252 40 2256 107 0 0 chr6 20684496 20684785 -161730457 - AluSc SINE Alu -20 289 1 486 341 153 0 chr6 20686314 20686537 -161728705 - MIR SINE MIR -1 261 5 645 289 154 60 chr6 20686966 20687604 -161727638 - L2 LINE L2 -8 3305 2593 901 339 40 2 chr6 20687604 20687999 -161727243 - L2 LINE L2 -971 2343 1934 1808 76 13 0 chr6 20688414 20688639 -161726603 + AluY SINE Alu 83 310 -1 263 233 17 0 chr6 20688790 20688850 -161726392 - MLT1J LTR MaLR -313 198 138 301 310 39 31 chr6 20689111 20689240 -161726002 + L2 LINE L2 2927 3056 -216 5238 253 41 9 chr6 20689837 20691327 -161723915 + L1M2c LINE L1 68 1438 -5411 2699 196 44 2 chr6 20691352 20691970 -161723272 + L1M2c LINE L1 2192 2835 -4014 873 196 64 46 chr6 20691971 20692252 -161722990 + pTR5 LTR ERV1 743 1028 -1410 5270 80 88 36 chr6 20692331 20693116 -161722126 + LTR12 LTR ERV1 1 826 0 27561 93 7 9 chr6 20693116 20697983 -161717259 + HERV9 LTR ERV1 1 4944 -3455 2286 155 167 52 chr6 20697984 20698791 -161716451 + Harlequin LTR ERV1 840 1739 -5157 * 5392 84 16 0 chr6 20698790 20699582 -161715660 + Harlequin LTR ERV1 504 8399 0 1418 224 19 0 chr6 20699592 20699913 -161715329 + L1MB5 LINE L1 5838 6164 -10 1154 167 53 30 chr6 20699913 20700152 -161715090 - L1M4 LINE L1 -664 5510 5257 2398 59 7 13 chr6 20700152 20700457 -161714785 + AluY SINE Alu 1 303 -8 1154 167 53 30 chr6 20700457 20700658 -161714584 - L1M4 LINE L1 -917 5257 5062 488 291 73 23 chr6 20700658 20700878 -161714364 + LTR16C LTR ERVL 261 491 0 1401 232 140 7 chr6 20701103 20701539 -161713703 - LTR54B LTR ERV1 0 498 5 236 232 174 29 chr6 20703191 20703260 -161711982 + MIR SINE MIR 46 124 -84 397 176 71 88 chr6 20703908 20704090 -161711152 + MER104 DNA MER2_type 2 180 0 441 260 8 41 chr6 20704548 20704671 -161710571 + MER5B DNA MER1_type 1 119 -59 5882 229 37 25 chr6 20704703 20705887 -161709355 + L1MB3 LINE L1 3353 4568 -1578 2433 140 20 8 chr6 20705887 20706280 -161708962 + L1PA15 LINE L1 5767 6164 -1 5882 229 37 25 chr6 20706280 20706916 -161708326 + L1MB3 LINE L1 4568 5195 -951 344 198 19 3 chr6 20706916 20707133 -161708109 + AluJo SINE Alu 1 289 -13 4621 157 17 31 chr6 20707147 20708153 -161707089 + L1MB3 LINE L1 5187 6179 -4 217 167 71 0 chr6 20708173 20708215 -161707027 + MER5B DNA MER1_type 131 175 -3 411 199 333 0 chr6 20708402 20708543 -161706699 - MER5A DNA MER1_type 0 189 2 341 290 10 10 chr6 20708605 20708705 -161706537 - MIR SINE MIR -79 129 30 22 0 0 0 chr6 20708808 20708830 -161706412 + AT_rich Low_complexity Low_complexity 1 22 0 453 274 38 43 chr6 20709382 20709568 -161705674 - MIR SINE MIR -3 259 75 2190 93 49 41 chr6 20709678 20709724 -161705518 - THE1C LTR MaLR -6 369 325 2568 56 0 0 chr6 20709724 20710029 -161705213 - AluY SINE Alu -5 306 2 2190 93 49 41 chr6 20710029 20710348 -161704894 - THE1C LTR MaLR -50 325 1 959 245 37 8 chr6 20710495 20710736 -161704506 + MIR SINE MIR 15 262 0 3556 151 27 0 chr6 20712475 20713063 -161702179 - MER6A DNA MER2_type -1 604 1 434 238 119 54 chr6 20713684 20713852 -161701390 - MIR3 SINE MIR -25 183 5 224 341 8 0 chr6 20713912 20714006 -161701236 + MIR SINE MIR 53 148 -60 243 0 0 0 chr6 20715204 20715231 -161700011 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 307 224 13 0 chr6 20716234 20716310 -161698932 - MIR3 SINE MIR -7 201 125 923 284 68 65 chr6 20717023 20717610 -161697632 + MLT1L LTR MaLR 8 596 -19 2437 75 0 10 chr6 20717713 20718019 -161697223 + AluY SINE Alu 1 303 -8 1583 100 0 38 chr6 20718639 20718878 -161696364 + MER30 DNA MER1_type 1 230 0 269 286 71 0 chr6 20718947 20719017 -161696225 - L2 LINE L2 0 3272 3198 24 32 0 0 chr6 20719866 20719897 -161695345 + AT_rich Low_complexity Low_complexity 1 31 0 224 30 30 0 chr6 20720290 20720323 -161694919 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 343 292 133 10 chr6 20721278 20721473 -161693769 - LTR33A LTR ERVL -1 522 304 22 0 0 0 chr6 20722450 20722472 -161692770 + AT_rich Low_complexity Low_complexity 1 22 0 2159 110 0 0 chr6 20722555 20722869 -161692373 - AluSx SINE Alu 0 317 4 208 139 0 0 chr6 20722934 20722970 -161692272 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 422 301 83 13 chr6 20723628 20723857 -161691385 + MLT1L LTR MaLR 371 615 0 252 0 0 0 chr6 20724116 20724144 -161691098 + (TTG)n Simple_repeat Simple_repeat 2 29 0 288 0 0 0 chr6 20725452 20725484 -161689758 + (CA)n Simple_repeat Simple_repeat 2 33 0 2177 149 29 0 chr6 20727055 20727438 -161687804 + MER57A LTR ERV1 4 397 -6 219 36 0 0 chr6 20727439 20727467 -161687775 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2149 113 0 0 chr6 20728235 20728551 -161686691 + AluSx SINE Alu 1 316 0 37 32 0 16 chr6 20728608 20728626 -161686616 + AT_rich Low_complexity Low_complexity 1 18 -43 1701 167 15 18 chr6 20728626 20728956 -161686286 + L1MC1 LINE L1 6003 6331 -2 37 32 0 16 chr6 20728956 20728999 -161686243 + AT_rich Low_complexity Low_complexity 18 61 0 2347 107 3 0 chr6 20729204 20729512 -161685730 - AluSq SINE Alu -2 311 3 528 194 73 103 chr6 20730085 20730233 -161685009 + L1MC4 LINE L1 7612 7763 -279 2200 110 10 0 chr6 20730233 20730532 -161684710 - AluSq SINE Alu -11 302 1 528 194 73 103 chr6 20730532 20730712 -161684530 + L1MC4 LINE L1 7763 7930 -112 297 240 16 50 chr6 20730758 20730879 -161684363 + L1MC4 LINE L1 7926 8042 0 365 277 7 14 chr6 20730890 20731038 -161684204 + L1MC5 LINE L1 7769 7915 -46 1954 149 128 10 chr6 20731047 20731430 -161683812 + MSTA LTR MaLR 1 428 0 201 74 0 0 chr6 20731439 20731466 -161683776 + (T)n Simple_repeat Simple_repeat 1 27 0 2062 171 6 43 chr6 20731775 20732243 -161682999 + L1MB3 LINE L1 5730 6180 -3 2223 121 68 39 chr6 20732344 20732428 -161682814 + L1MA4A LINE L1 5867 5947 -356 2249 70 18 0 chr6 20732428 20732712 -161682530 + AluY SINE Alu 1 289 -22 2223 121 68 39 chr6 20732712 20733041 -161682201 + L1MA4A LINE L1 5947 6292 -11 207 0 0 0 chr6 20733571 20733594 -161681648 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 2444 89 3 0 chr6 20734278 20734582 -161680660 - AluSq SINE Alu -8 305 1 261 0 0 0 chr6 20734766 20734795 -161680447 + (TG)n Simple_repeat Simple_repeat 1 29 0 199 291 154 34 chr6 20735079 20735196 -161680046 - L2 LINE L2 -4 3268 3138 1636 184 53 26 chr6 20735398 20735778 -161679464 - MLT1B LTR MaLR 0 390 1 247 311 126 29 chr6 20735862 20736068 -161679174 - L2 LINE L2 -652 2662 2437 295 320 26 57 chr6 20736128 20736295 -161678947 + MIR SINE MIR 15 176 -71 2151 101 3 3 chr6 20736629 20736917 -161678325 + AluSq SINE Alu 1 288 -25 315 321 60 30 chr6 20736935 20737103 -161678139 + L3b LINE CR1 1216 1388 -195 2027 167 0 13 chr6 20737117 20737295 -161677947 + MLT1B LTR MaLR 1 180 -210 2354 95 3 25 chr6 20737295 20737611 -161677631 + AluSp SINE Alu 1 309 -4 2027 167 0 13 chr6 20737611 20737815 -161677427 + MLT1B LTR MaLR 180 378 -12 380 20 20 0 chr6 20738684 20738733 -161676509 + (GA)n Simple_repeat Simple_repeat 1 50 0 276 296 20 0 chr6 20738922 20739020 -161676222 + MER94 DNA DNA 1 100 -34 461 263 164 84 chr6 20739043 20739457 -161675785 - L3 LINE CR1 -342 1235 789 915 276 71 0 chr6 20739554 20739793 -161675449 - MIR SINE MIR -1 261 6 1996 128 4 0 chr6 20739826 20740107 -161675135 - AluSg SINE Alu -28 282 1 224 167 45 76 chr6 20740107 20740173 -161675069 - L3 LINE CR1 -915 662 599 186 206 0 0 chr6 20740260 20740294 -161674948 - L3 LINE CR1 -1121 456 423 819 129 25 24 chr6 20740399 20740704 -161674538 + CT-rich Low_complexity Low_complexity 1 305 0 22 0 0 0 chr6 20741408 20741430 -161673812 + AT_rich Low_complexity Low_complexity 1 22 0 183 156 0 0 chr6 20742172 20742204 -161673038 + (TG)n Simple_repeat Simple_repeat 1 32 0 197 65 32 0 chr6 20742389 20742420 -161672822 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 493 242 17 42 chr6 20742611 20742731 -161672511 - L2 LINE L2 -1 3271 3155 503 229 46 8 chr6 20743163 20743294 -161671948 + MER45A DNA AcHobo 43 178 0 563 336 22 22 chr6 20743653 20743882 -161671360 + MIR SINE MIR 21 249 -13 28 0 0 0 chr6 20744743 20744771 -161670471 + AT_rich Low_complexity Low_complexity 1 28 0 287 343 116 17 chr6 20744795 20744976 -161670266 - MIR SINE MIR -45 217 19 23 0 0 0 chr6 20746143 20746166 -161669076 + AT_rich Low_complexity Low_complexity 1 23 0 771 277 81 24 chr6 20746189 20746485 -161668757 + L2 LINE L2 3000 3312 -1 285 29 0 0 chr6 20747870 20747904 -161667338 + (CA)n Simple_repeat Simple_repeat 2 35 0 200 217 22 0 chr6 20748437 20748483 -161666759 - L2 LINE L2 -5 3308 3262 216 0 0 0 chr6 20749766 20749790 -161665452 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 477 0 0 0 chr6 20749789 20749842 -161665400 + (TG)n Simple_repeat Simple_repeat 2 54 0 278 304 38 0 chr6 20750406 20750485 -161664757 - MER5A DNA MER1_type 0 189 108 1799 112 4 0 chr6 20750831 20751099 -161664143 - L1PA14 LINE L1 -2 6159 5891 277 333 10 0 chr6 20751099 20751195 -161664047 + L2 LINE L2 2461 2557 -757 638 297 50 18 chr6 20751231 20751453 -161663789 - L2 LINE L2 -422 2892 2664 2254 123 0 3 chr6 20752024 20752334 -161662908 + AluSx SINE Alu 1 309 -3 1469 112 0 42 chr6 20753557 20753771 -161661471 - AluSx SINE Alu -13 297 93 2108 20 4 0 chr6 20753788 20754033 -161661209 - L1PA3 LINE L1 -4 6151 5906 806 97 0 0 chr6 20754033 20754136 -161661106 - AluSx SINE Alu -210 103 1 195 265 118 59 chr6 20754498 20754600 -161660642 - MIR3 SINE MIR -86 122 15 195 42 0 0 chr6 20754683 20754707 -161660535 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1283 96 36 153 chr6 20754709 20754866 -161660376 - L1PA15 LINE L1 -13 6152 6045 2576 48 3 0 chr6 20754866 20755175 -161660067 - AluY SINE Alu -1 310 1 1283 96 36 153 chr6 20755175 20755318 -161659924 - L1PA15 LINE L1 -120 6045 5887 359 316 142 9 chr6 20755901 20756113 -161659129 - MIR SINE MIR -19 243 4 2108 106 0 7 chr6 20756852 20757166 -161658076 + AluSx SINE Alu 1 312 0 197 211 18 0 chr6 20757255 20757312 -161657930 + CT-rich Low_complexity Low_complexity 2 59 0 484 150 0 0 chr6 20757558 20757638 -161657604 - MADE1 DNA Mariner 0 80 1 391 190 0 20 chr6 20758362 20758462 -161656780 + GA-rich Low_complexity Low_complexity 2 99 0 243 264 0 0 chr6 20758462 20758515 -161656727 + A-rich Low_complexity Low_complexity 1 53 0 202 302 0 0 chr6 20758755 20758818 -161656424 + G-rich Low_complexity Low_complexity 1 63 0 2025 147 0 7 chr6 20758892 20759198 -161656044 - AluSx SINE Alu 0 312 9 21 0 0 0 chr6 20759494 20759515 -161655727 + AT_rich Low_complexity Low_complexity 1 21 0 394 278 70 48 chr6 20760423 20760637 -161654605 - MIR SINE MIR -43 219 8 513 319 21 48 chr6 20761609 20762044 -161653198 - L1MEc LINE L1 -4745 1651 1229 823 214 0 18 chr6 20762404 20762572 -161652670 - FRAM SINE Alu 0 166 2 272 291 12 35 chr6 20763210 20763296 -161651946 - MIR3 SINE MIR -4 204 121 2459 90 0 0 chr6 20763491 20763803 -161651439 + AluSx SINE Alu 1 312 0 1600 234 55 39 chr6 20763949 20764645 -161650597 + L1MB8 LINE L1 875 1581 -4961 397 211 11 11 chr6 20764634 20764729 -161650513 + L1MB8 LINE L1 1987 2081 -4565 * 1732 248 45 41 chr6 20764763 20764845 -161650397 + L1MB8 LINE L1 3192 3272 -3372 2121 107 0 10 chr6 20764845 20765136 -161650106 + AluY SINE Alu 6 293 -18 1732 248 45 41 chr6 20765136 20765903 -161649339 + L1MB8 LINE L1 3272 4044 -2600 2075 118 3 0 chr6 20765922 20766389 -161648853 + AluY SINE Alu 23 490 0 879 183 0 6 chr6 20766209 20766425 -161648817 + GA-rich Low_complexity Low_complexity 1 215 0 3153 212 57 88 chr6 20766425 20766836 -161648406 + L1MB8 LINE L1 4060 4482 -2162 760 102 0 0 chr6 20766836 20766934 -161648308 + AluY SINE Alu 7 104 -207 3153 212 57 88 chr6 20766934 20767696 -161647546 + L1MB8 LINE L1 4482 5291 -1353 1328 244 13 16 chr6 20767698 20768009 -161647233 + Tigger5 DNA MER2_type 1 310 -2013 397 176 0 35 chr6 20767991 20768076 -161647166 + Tigger5 DNA MER2_type 2242 2323 0 * 1339 239 84 9 chr6 20768082 20768521 -161646721 + L1MB8 LINE L1 5298 5769 -875 511 286 0 28 chr6 20768525 20768893 -161646349 + (CATATA)n Simple_repeat Simple_repeat 1 357 0 436 268 0 91 chr6 20768849 20769047 -161646195 + (CATA)n Simple_repeat Simple_repeat 1 180 0 * 261 174 59 0 chr6 20769060 20769125 -161646117 + L1MB8 LINE L1 5754 5826 -846 2516 74 0 0 chr6 20769125 20769436 -161645806 + AluY SINE Alu 1 311 0 3220 224 43 3 chr6 20770480 20771330 -161643912 + L1MB8 LINE L1 5784 6667 -9 1590 235 24 17 chr6 20771332 20771745 -161643497 - LTR52 LTR ERVL -3 418 3 2223 135 0 0 chr6 20772030 20772341 -161642901 + AluSx SINE Alu 1 311 -1 209 276 69 0 chr6 20773092 20773150 -161642092 + MIR SINE MIR 92 153 -109 228 215 165 0 chr6 20773732 20773811 -161641431 + MLT1L LTR MaLR 507 598 -17 236 293 71 20 chr6 20774073 20774172 -161641070 + L3 LINE CR1 1300 1403 -174 2188 121 0 3 chr6 20774802 20775109 -161640133 + AluSq SINE Alu 1 306 -7 541 223 127 91 chr6 20775134 20775224 -161640018 - MIR SINE MIR -53 209 124 2170 109 0 0 chr6 20775224 20775528 -161639714 + L1PA11 LINE L1 5871 6174 0 541 223 127 91 chr6 20775528 20775634 -161639608 - MIR SINE MIR -138 124 6 257 398 6 12 chr6 20776305 20776466 -161638776 - L3b LINE CR1 -135 1448 1289 220 326 32 11 chr6 20776524 20776619 -161638623 + MIR3 SINE MIR 109 205 -3 2233 137 8 30 chr6 20777246 20777618 -161637624 - THE1B LTR MaLR 0 364 1 336 298 138 58 chr6 20779567 20779792 -161635450 - MIR SINE MIR 0 262 20 226 369 70 5 chr6 20780048 20780262 -161634980 - MLT1J1 LTR MaLR -126 320 93 379 346 14 13 chr6 20780506 20780717 -161634525 + MIR SINE MIR 9 217 -45 200 263 0 0 chr6 20781106 20781144 -161634098 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 255 241 13 13 chr6 20781477 20781556 -161633686 + L1MD2 LINE L1 6269 6347 -12 372 141 20 10 chr6 20781560 20781659 -161633583 + (TA)n Simple_repeat Simple_repeat 1 100 0 2088 117 0 20 chr6 20781662 20781960 -161633282 - AluSx SINE Alu -20 292 1 180 300 0 0 chr6 20782351 20782401 -161632841 - L2 LINE L2 -9 3263 3214 30 27 0 0 chr6 20783239 20783276 -161631966 + AT_rich Low_complexity Low_complexity 1 37 0 869 294 128 27 chr6 20783675 20784277 -161630965 + MLT2F LTR ERVL 1 663 0 246 345 150 0 chr6 20784602 20784715 -161630527 - MIR SINE MIR -61 147 18 223 250 0 0 chr6 20785197 20785249 -161629993 + A-rich Low_complexity Low_complexity 4 55 0 870 283 92 27 chr6 20785264 20785677 -161629565 - LTR16A LTR ERVL -2 455 16 1210 368 57 15 chr6 20785912 20787007 -161628235 - HERV16 LTR ERVL -480 5284 4144 1833 294 69 35 chr6 20787013 20787792 -161627450 - HERV16 LTR ERVL -2619 2377 1572 2718 316 50 8 chr6 20787991 20789159 -161626083 - HERV16 LTR ERVL -3710 1286 70 682 350 18 35 chr6 20789282 20789352 -161625890 - LTR16A LTR ERVL -6 444 374 1105 280 30 59 chr6 20789352 20789827 -161625415 + LTR16B LTR ERVL 4 464 0 682 350 18 35 chr6 20789827 20790156 -161625086 - LTR16A LTR ERVL -76 374 52 244 319 98 12 chr6 20790662 20790825 -161624417 - MIR SINE MIR -52 210 34 210 71 0 0 chr6 20792482 20792510 -161622732 + (GGAAA)n Simple_repeat Simple_repeat 3 30 0 488 298 29 35 chr6 20792980 20793151 -161622091 - MIR SINE MIR -18 244 75 254 248 67 60 chr6 20793649 20793798 -161621444 + HERV16 LTR ERVL 1585 1734 -3262 * 1401 311 32 28 chr6 20793795 20794683 -161620559 + HERV16 LTR ERVL 2524 3423 -1930 759 307 62 42 chr6 20794712 20795279 -161619963 + HERV16 LTR ERVL 3211 3788 -1208 560 319 53 43 chr6 20795401 20795851 -161619391 + HERV16 LTR ERVL 4152 4384 -612 1112 294 23 37 chr6 20796638 20797067 -161618175 + LTR16B LTR ERVL 34 456 -8 2384 86 3 0 chr6 20797710 20798014 -161617228 + AluSp SINE Alu 1 305 -8 338 236 64 29 chr6 20798382 20798522 -161616720 + MLT1H LTR MaLR 405 549 0 588 312 9 0 chr6 20798747 20798968 -161616274 - L1MC4a LINE L1 -1890 5918 5696 341 323 175 11 chr6 20800994 20801183 -161614059 - MIR SINE MIR -7 255 36 2421 72 3 13 chr6 20802029 20802335 -161612907 - AluSp SINE Alu 0 313 11 265 301 96 37 chr6 20802417 20802553 -161612689 - MIR3 SINE MIR -61 147 4 4846 154 37 19 chr6 20804828 20805797 -161609445 + L1PB3 LINE L1 4522 5529 -625 2086 147 0 0 chr6 20805797 20806096 -161609146 + AluSq SINE Alu 1 299 -14 4846 154 37 19 chr6 20806096 20806727 -161608515 + L1PB3 LINE L1 5529 6147 -7 370 147 67 0 chr6 20807527 20807602 -161607640 + MADE1 DNA Mariner 1 80 0 200 323 37 49 chr6 20808904 20809068 -161606174 + MIR SINE MIR 99 260 -2 316 308 0 0 chr6 20809727 20809831 -161605411 + (TA)n Simple_repeat Simple_repeat 2 105 0 3012 238 68 6 chr6 20809897 20810920 -161604322 - L1ME2 LINE L1 -39 6125 5035 1368 242 31 31 chr6 20810930 20811409 -161603833 - L1ME2 LINE L1 -1286 4860 4382 1768 172 9 46 chr6 20812872 20813221 -161602021 - MLT1A1 LTR MaLR 0 365 30 5178 105 3 16 chr6 20813223 20813901 -161601341 - L1PA11 LINE L1 -14 6160 5492 2470 81 0 0 chr6 20813901 20814209 -161601033 - AluY SINE Alu -3 308 1 5178 105 3 16 chr6 20814209 20814291 -161600951 - L1PA11 LINE L1 -682 5492 5410 247 163 0 20 chr6 20814291 20814340 -161600902 - MLT1A1 LTR MaLR -319 55 8 188 146 0 21 chr6 20815180 20815228 -161600014 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 710 180 8 0 chr6 20815580 20815702 -161599540 - Tigger1 DNA MER2_type 0 2418 2296 4334 138 26 0 chr6 20815702 20816400 -161598842 + L1PA16 LINE L1 5442 6157 -9 9008 128 28 10 chr6 20816434 20817135 -161598107 - Tigger1 DNA MER2_type -980 1438 751 2014 129 0 7 chr6 20817135 20817430 -161597812 + AluSg SINE Alu 3 295 -15 9008 128 28 10 chr6 20817430 20818139 -161597103 - Tigger1 DNA MER2_type -1667 751 2 413 333 22 7 chr6 20818266 20818401 -161596841 + MIR3 SINE MIR 6 142 -66 587 205 0 0 chr6 20818870 20818982 -161596260 + MER45B DNA AcHobo 61 172 -868 1036 226 82 38 chr6 20818982 20819323 -161595919 - MLT1A1 LTR MaLR 0 365 10 2174 210 48 42 chr6 20819336 20819879 -161595363 + MER45B DNA AcHobo 173 718 -322 283 250 230 0 chr6 20819887 20819987 -161595255 + MER5A DNA MER1_type 64 186 -3 231 170 0 0 chr6 20820025 20820072 -161595170 + GA-rich Low_complexity Low_complexity 1 47 0 2633 45 0 3 chr6 20820767 20821079 -161594163 - AluY SINE Alu 0 311 1 233 97 81 0 chr6 20822152 20822214 -161593028 + (TA)n Simple_repeat Simple_repeat 2 68 0 38896 73 8 1 chr6 20822264 20827204 -161588038 - HERVL-A1 LTR ERVL -682 4972 1 308 48 0 24 chr6 20827204 20827246 -161587996 - MLT2A1 LTR ERVL 0 453 413 404 24 72 12 chr6 20827248 20827331 -161587911 + (TA)n Simple_repeat Simple_repeat 1 88 0 1614 80 46 8 chr6 20827356 20827593 -161587649 - MLT2A1 LTR ERVL -198 246 1 210 388 140 9 chr6 20828453 20828889 -161586353 + L2 LINE L2 1972 2464 -850 * 399 341 30 0 chr6 20828886 20829018 -161586224 + L2 LINE L2 3137 3272 0 224 308 113 15 chr6 20829553 20829686 -161585556 + L2 LINE L2 3153 3298 -15 7028 111 13 25 chr6 20829833 20831135 -161584107 + L1MA1 LINE L1 5016 6301 -1 440 309 73 30 chr6 20832569 20832802 -161582440 - MIR SINE MIR 0 262 20 2211 105 7 0 chr6 20832852 20833146 -161582096 - AluSg SINE Alu -14 296 1 282 362 9 0 chr6 20833626 20833731 -161581511 - L2 LINE L2 -16 3297 3192 497 235 279 7 chr6 20835051 20835331 -161579911 - MLT1F LTR MaLR -7 535 142 1467 194 19 9 chr6 20835331 20835626 -161579616 - MLT1E1 LTR MaLR 0 654 324 2197 102 0 0 chr6 20835673 20835956 -161579286 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr6 20835960 20835983 -161579259 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3471 182 50 47 chr6 20835986 20836127 -161579115 - L1MB7 LINE L1 -11 6173 6034 1983 147 0 13 chr6 20836127 20836427 -161578815 - AluSx SINE Alu -16 296 1 3471 182 50 47 chr6 20836427 20837544 -161577698 - L1MB7 LINE L1 -150 6034 4905 887 226 53 23 chr6 20837545 20837810 -161577432 - MLT1E1 LTR MaLR -379 275 3 328 356 19 6 chr6 20837826 20837986 -161577256 - MLT1F LTR MaLR -393 162 1 1984 157 0 3 chr6 20838026 20838332 -161576910 - AluSx SINE Alu -3 309 5 26 0 0 0 chr6 20838957 20838983 -161576259 + AT_rich Low_complexity Low_complexity 1 26 0 290 165 0 35 chr6 20839063 20839148 -161576094 + CT-rich Low_complexity Low_complexity 1 82 0 221 241 0 0 chr6 20839306 20839364 -161575878 + A-rich Low_complexity Low_complexity 5 62 0 11639 164 20 27 chr6 20839658 20842369 -161572873 - L1P4 LINE L1 -359 5809 3126 2017 127 0 0 chr6 20842369 20842644 -161572598 - AluSq SINE Alu -38 275 1 11639 164 20 27 chr6 20842644 20842850 -161572392 - L1P4 LINE L1 -3042 3126 2920 2068 39 47 4 chr6 20842850 20843104 -161572138 + AluY SINE Alu 34 298 -13 1677 207 10 0 chr6 20843535 20843839 -161571403 - AluJb SINE Alu -5 307 1 2120 4 0 0 chr6 20843849 20844075 -161571167 - AluYa5 SINE Alu -10 301 76 367 312 7 36 chr6 20844075 20844213 -161571029 - MIR SINE MIR -63 199 66 1308 266 32 40 chr6 20844234 20844832 -161570410 - Charlie7 DNA MER1_type -33 2579 1987 2215 233 106 106 chr6 20844832 20845621 -161569621 + L1MCa LINE L1 1 788 -5257 2090 160 14 8 chr6 20845621 20845984 -161569258 - MLT1A1 LTR MaLR 0 365 1 2215 233 106 106 chr6 20845984 20846115 -161569127 + L1MCa LINE L1 788 917 -5128 4279 118 5 2 chr6 20846115 20846725 -161568517 - LTR9 LTR ERV1 0 612 1 2215 233 106 106 chr6 20846725 20847002 -161568240 + L1MCa LINE L1 917 1173 -4872 2113 130 0 25 chr6 20847493 20847809 -161567433 + AluSx SINE Alu 1 308 -4 418 264 187 53 chr6 20847972 20848271 -161566971 + MLT1I LTR MaLR 71 409 0 343 48 0 0 chr6 20849369 20849411 -161565831 - L1PA7 LINE L1 -11 6143 6102 5024 63 2 3 chr6 20849435 20850073 -161565169 - L1PA7 LINE L1 -11 6143 5507 280 295 158 86 chr6 20850376 20850610 -161564632 - L2 LINE L2 -27 3245 2995 23 0 0 0 chr6 20850668 20850691 -161564551 + AT_rich Low_complexity Low_complexity 1 23 0 875 54 9 0 chr6 20850692 20850804 -161564438 - L1PA5 LINE L1 -9 6145 6033 2587 52 0 0 chr6 20850804 20851128 -161564114 + L1PA4 LINE L1 5646 5969 -186 559 201 13 91 chr6 20851189 20851343 -161563899 + MER3 DNA MER1_type 1 142 -67 185 62 0 31 chr6 20851330 20851362 -161563880 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 317 319 66 30 chr6 20851469 20851635 -161563607 - L2 LINE L2 -508 2806 2635 2250 105 0 0 chr6 20854597 20854882 -161560360 + AluSg SINE Alu 1 285 -25 1512 49 25 0 chr6 20854906 20855109 -161560133 - L1PA10 LINE L1 -187 5981 5774 198 0 0 0 chr6 20855120 20855142 -161560100 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 27 0 0 0 chr6 20855282 20855309 -161559933 + AT_rich Low_complexity Low_complexity 1 27 0 1734 168 4 4 chr6 20855313 20855593 -161559649 + AluJb SINE Alu 6 285 -27 279 300 73 0 chr6 20855802 20855952 -161559290 - L1ME4a LINE L1 -81 6040 5880 1404 289 162 11 chr6 20856140 20856799 -161558443 - L2 LINE L2 0 3313 2755 2390 70 0 13 chr6 20856799 20857101 -161558141 + AluY SINE Alu 1 298 -13 1404 289 162 11 chr6 20857101 20857240 -161558002 - L2 LINE L2 -558 2755 2638 1974 164 65 25 chr6 20857240 20857642 -161557600 - MER47B DNA MER2_type 0 418 1 1404 289 162 11 chr6 20857642 20857828 -161557414 - L2 LINE L2 -675 2638 2172 659 66 0 11 chr6 20858105 20858196 -161557046 + 5S rRNA rRNA 1 90 -31 23 86 0 0 chr6 20859507 20859565 -161555677 + AT_rich Low_complexity Low_complexity 1 58 0 293 322 34 7 chr6 20859686 20859832 -161555410 - MIR SINE MIR -46 216 67 1551 207 21 3 chr6 20859836 20860165 -161555077 - MER58B DNA MER1_type -6 335 1 1912 136 7 14 chr6 20961090 20961385 -161453857 - AluSx SINE Alu -16 296 4 2022 156 12 6 chr6 20961439 20961785 -161453457 + MER7A DNA MER2_type 1 346 0 1506 191 35 85 chr6 20961794 20962418 -161452824 - L1MC5 LINE L1 -101 7860 7268 809 205 73 19 chr6 20962550 20962826 -161452416 - L1MC4 LINE L1 -728 7233 6959 473 265 66 7 chr6 20963135 20963286 -161451956 + MIR SINE MIR 103 262 0 1529 180 49 35 chr6 20964061 20964324 -161450918 - L1MB8 LINE L1 -13 6165 5892 402 69 0 0 chr6 20964324 20964382 -161450860 + (TG)n Simple_repeat Simple_repeat 1 58 0 1529 180 49 35 chr6 20964382 20964545 -161450697 - L1MB8 LINE L1 -286 5892 5733 21 36 0 0 chr6 20964926 20964954 -161450288 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 20965979 20966000 -161449242 + (TTA)n Simple_repeat Simple_repeat 2 22 0 583 211 18 0 chr6 20966003 20966117 -161449125 - AluJb SINE Alu -196 116 1 445 223 170 0 chr6 20966185 20966297 -161448945 - FLAM_A SINE Alu -2 131 1 207 191 24 0 chr6 20966559 20966601 -161448641 + CT-rich Low_complexity Low_complexity 1 43 0 315 0 0 0 chr6 20966604 20966639 -161448603 + (CA)n Simple_repeat Simple_repeat 2 36 0 269 231 128 17 chr6 20966819 20966936 -161448306 - L1ME3A LINE L1 -272 5898 5769 324 279 33 94 chr6 20967165 20967318 -161447924 - L1ME3A LINE L1 -925 5221 5087 1690 141 78 14 chr6 20967318 20967602 -161447640 + AluJb SINE Alu 6 307 -5 324 279 33 94 chr6 20967602 20967692 -161447550 - L1ME3A LINE L1 -1059 5087 4993 186 43 0 0 chr6 20967693 20967716 -161447526 + (TG)n Simple_repeat Simple_repeat 2 24 0 999 156 12 12 chr6 20967816 20967976 -161447266 + FRAM SINE Alu 2 161 -15 634 323 92 10 chr6 20968452 20968941 -161446301 - L1ME3A LINE L1 -341 5829 5301 1497 148 7 21 chr6 20968978 20969262 -161445980 - L1MB7 LINE L1 0 6184 5905 6527 135 119 47 chr6 20970954 20972407 -161442835 - pTR5 LTR ERV1 -143 2295 738 348 271 15 68 chr6 20972585 20972718 -161442524 - MER5A DNA MER1_type -57 132 7 2026 106 7 46 chr6 20972869 20973172 -161442070 - AluSx SINE Alu -20 292 2 1938 86 0 32 chr6 20973183 20973462 -161441780 - AluY SINE Alu -5 306 37 37 0 0 21 chr6 20973775 20973805 -161441437 + AT_rich Low_complexity Low_complexity 1 31 -16 2441 49 0 0 chr6 20973805 20974093 -161441149 - AluY SINE Alu -23 288 1 37 0 0 21 chr6 20974093 20974110 -161441132 + AT_rich Low_complexity Low_complexity 31 47 0 981 213 229 17 chr6 20974432 20974785 -161440457 + L1ME1 LINE L1 5720 6147 -19 795 167 48 0 chr6 20974781 20975018 -161440224 + L1ME1 LINE L1 5192 5440 -745 * 6810 145 19 35 chr6 20975017 20975907 -161439335 + L1MA4 LINE L1 3921 4824 -1476 2168 122 0 10 chr6 20975907 20976210 -161439032 + AluSq SINE Alu 11 310 -3 6810 145 19 35 chr6 20976210 20977727 -161437515 + L1MA4 LINE L1 4824 6290 -10 234 209 22 11 chr6 20977727 20977818 -161437424 + Charlie5 DNA MER1_type 2437 2528 -84 26 64 0 0 chr6 20977829 20977876 -161437366 + AT_rich Low_complexity Low_complexity 1 47 0 2516 209 36 52 chr6 20977918 20978604 -161436638 + L1ME1 LINE L1 5474 6148 -18 938 281 36 69 chr6 20979434 20979549 -161435693 + L2 LINE L2 2862 2979 -334 2332 88 7 0 chr6 20979549 20979846 -161435396 + AluSp SINE Alu 1 299 -14 938 281 36 69 chr6 20979846 20980196 -161435046 + L2 LINE L2 2979 3312 -1 775 216 50 66 chr6 20980202 20980259 -161434983 - MIR SINE MIR -5 257 201 3276 146 9 13 chr6 20980259 20980788 -161434454 + MER1A DNA MER1_type 1 527 0 775 216 50 66 chr6 20980788 20980971 -161434271 - MIR SINE MIR -61 201 21 324 253 72 24 chr6 20982313 20982396 -161432846 + MIR SINE MIR 28 114 -148 327 311 71 36 chr6 20982650 20982846 -161432396 - L1MEc LINE L1 -3647 2568 2366 1032 188 134 3 chr6 20982847 20983139 -161432103 + MER46C DNA MER2_type 1 330 -8 393 237 86 137 chr6 20983161 20983281 -161431961 - L1MEc LINE L1 -4023 2373 2248 1658 140 41 51 chr6 20983281 20983573 -161431669 + AluJb SINE Alu 1 289 -23 393 237 86 137 chr6 20983573 20983976 -161431266 - L1MEc LINE L1 -4148 2248 1877 905 141 12 12 chr6 20984248 20984418 -161430824 - L1MB8 LINE L1 -2 6176 6007 1629 195 84 7 chr6 20984423 20984621 -161430621 + MLT1C LTR MaLR 6 187 -280 2341 122 0 0 chr6 20984621 20984932 -161430310 + AluSp SINE Alu 1 311 -2 1629 195 84 7 chr6 20984932 20985159 -161430083 + MLT1C LTR MaLR 187 464 -3 6759 197 37 24 chr6 20985161 20985367 -161429875 - L1MB8 LINE L1 -174 6010 5808 1875 160 0 39 chr6 20985367 20985551 -161429691 - AluJo SINE Alu -12 300 131 2477 62 0 10 chr6 20985551 20985855 -161429387 + AluSp SINE Alu 1 301 -12 1875 160 0 39 chr6 20985855 20985982 -161429260 - AluJo SINE Alu -181 131 1 6759 197 37 24 chr6 20985982 20988261 -161426981 - L1MB8 LINE L1 -376 5808 3494 10161 180 17 14 chr6 20988272 20991381 -161423861 - L1PA16 LINE L1 -11 6155 3041 481 111 0 0 chr6 20991382 20991454 -161423788 - U3 snRNA snRNA -145 72 1 1251 253 15 15 chr6 20991472 20991927 -161423315 - L1MB8 LINE L1 -2657 3489 3035 * 1417 261 38 66 chr6 20991916 20992724 -161422518 - L1MEc LINE L1 -5006 1199 414 1208 260 63 35 chr6 20992735 20993196 -161422046 + L2 LINE L2 2840 3313 0 230 270 27 0 chr6 20993286 20993318 -161421924 + GA-rich Low_complexity Low_complexity 2 32 -45 781 204 0 0 chr6 20993318 20993450 -161421792 + FLAM_A SINE Alu 1 132 -1 230 270 27 0 chr6 20993450 20993491 -161421751 + GA-rich Low_complexity Low_complexity 32 77 0 1768 128 9 25 chr6 20994441 20994792 -161420450 - MER4A LTR ERV1 0 664 261 585 121 0 10 chr6 20994792 20994891 -161420351 - MER4A LTR ERV1 -566 98 1 2167 84 28 3 chr6 20995224 20995511 -161419731 + AluSg1 SINE Alu 1 294 -15 2109 123 3 0 chr6 20996081 20996374 -161418868 + AluSx SINE Alu 1 294 -18 456 313 114 11 chr6 20996404 20996580 -161418662 + MIR SINE MIR 37 230 -32 4553 106 0 2 chr6 20997129 20997773 -161417469 + L1PA13 LINE L1 5517 6159 -4 209 239 22 0 chr6 20997828 20997874 -161417368 - L2 LINE L2 -8 3264 3218 2474 66 0 10 chr6 20998530 20998832 -161416410 - AluY SINE Alu -12 299 1 507 304 90 83 chr6 20998884 20999341 -161415901 - L2 LINE L2 -2 3270 2811 2172 125 3 3 chr6 20999583 20999895 -161415347 - AluSx SINE Alu 0 312 1 2424 94 0 0 chr6 21000148 21000457 -161414785 + AluSc SINE Alu 1 309 0 3930 134 13 2 chr6 21000464 21001090 -161414152 + MER41B LTR ERV1 3 635 0 320 336 109 8 chr6 21001280 21001399 -161413843 - L2 LINE L2 0 3272 3142 227 285 88 151 chr6 21001449 21001859 -161413383 + L2 LINE L2 2807 3190 -82 1338 46 0 0 chr6 21002167 21002320 -161412922 + AluY SINE Alu 151 303 -8 2367 89 0 0 chr6 21003180 21003472 -161411770 - AluSg SINE Alu -18 292 1 1535 265 78 75 chr6 21004651 21004793 -161410449 - MER115 DNA AcHobo -4 689 549 2360 106 0 3 chr6 21004793 21005104 -161410138 - AluSq SINE Alu -3 310 1 1535 265 78 75 chr6 21005104 21005630 -161409612 - MER115 DNA AcHobo -144 549 19 2340 116 7 0 chr6 21006884 21007194 -161408048 + AluSx SINE Alu 1 312 0 351 298 5 105 chr6 21007283 21007474 -161407768 - MIR3 SINE MIR -17 191 20 1546 149 22 99 chr6 21007869 21008191 -161407051 + AluJo SINE Alu 1 297 -15 24 0 0 0 chr6 21008225 21008249 -161406993 + AT_rich Low_complexity Low_complexity 1 24 0 735 218 0 0 chr6 21008308 21008441 -161406801 + FLAM_A SINE Alu 1 133 0 6097 154 34 19 chr6 21008582 21009869 -161405373 - L1MA7 LINE L1 0 6291 5025 712 169 39 15 chr6 21009869 21009999 -161405243 - FLAM_C SINE Alu 0 133 1 6097 154 34 19 chr6 21009999 21010294 -161404948 - L1MA7 LINE L1 -1266 5025 4736 1734 194 3 32 chr6 21010294 21010609 -161404633 - AluJo SINE Alu -6 306 1 6097 154 34 19 chr6 21010609 21010648 -161404594 - L1MA7 LINE L1 -1555 4736 4699 351 0 0 0 chr6 21010648 21010687 -161404555 + (TG)n Simple_repeat Simple_repeat 1 39 0 6097 154 34 19 chr6 21010687 21011172 -161404070 - L1MA7 LINE L1 -1592 4699 4157 3792 124 208 82 chr6 21012723 21014094 -161401148 - pTR5 LTR ERV1 0 2438 742 2031 119 34 3 chr6 21014254 21014549 -161400693 - AluSx SINE Alu -5 307 4 332 288 122 18 chr6 21014585 21014807 -161400435 - MIR SINE MIR -17 245 1 380 259 0 0 chr6 21015117 21015202 -161400040 + Charlie5 DNA MER1_type 10 94 -2518 800 169 8 0 chr6 21015241 21015371 -161399871 - AluSq/x SINE Alu -182 131 1 1137 187 83 56 chr6 21015372 21015538 -161399704 + Charlie5 DNA MER1_type 136 296 -2328 2272 112 10 0 chr6 21015538 21015841 -161399401 - AluSx SINE Alu -6 306 1 1137 187 83 56 chr6 21015841 21016011 -161399231 + Charlie5 DNA MER1_type 296 481 -2143 1001 197 89 15 chr6 21016021 21016255 -161398987 - MLT2B1 LTR ERVL 0 520 222 2251 99 7 0 chr6 21016845 21017139 -161398103 - AluSx SINE Alu -16 296 1 2257 111 3 10 chr6 21017399 21017706 -161397536 + AluSx SINE Alu 3 307 -5 22 56 0 0 chr6 21017899 21017935 -161397307 + AT_rich Low_complexity Low_complexity 1 36 0 1250 311 9 12 chr6 21017950 21018284 -161396958 + HERV16 LTR ERVL 2701 3033 -1963 749 310 38 34 chr6 21018964 21019467 -161395775 + HAL1b LINE L1 89 593 -755 431 218 11 0 chr6 21019465 21019552 -161395690 + L1MC5 LINE L1 6653 6740 -1221 * 1825 169 0 3 chr6 21020442 21020738 -161394504 - AluJo SINE Alu -17 295 1 2266 104 10 7 chr6 21020976 21021284 -161393958 + AluSx SINE Alu 1 309 -3 363 313 60 30 chr6 21021461 21021694 -161393548 - MARNA DNA Mariner -75 511 272 1602 257 120 46 chr6 21021765 21022320 -161392922 + Zaphod DNA AcHobo 17 622 -3409 244 48 48 0 chr6 21022320 21022362 -161392880 + (TA)n Simple_repeat Simple_repeat 1 44 0 1602 257 120 46 chr6 21022362 21022416 -161392826 + Zaphod DNA AcHobo 622 671 -3360 509 163 12 0 chr6 21022416 21022496 -161392746 - Tigger7 DNA MER2_type 0 2491 2411 1810 199 129 58 chr6 21022522 21023096 -161392146 + LTR1B LTR ERV1 1 615 -211 231 216 0 20 chr6 21023105 21023156 -161392086 + LTR28 LTR ERV1 915 964 -56 2014 192 44 3 chr6 21023257 21023643 -161391599 - Tigger7 DNA MER2_type -2085 402 1 686 184 52 55 chr6 21023643 21023986 -161391256 + Zaphod DNA AcHobo 670 1011 -3020 * 1400 206 110 39 chr6 21023958 21024195 -161391047 + Zaphod DNA AcHobo 3595 3875 -156 2100 136 0 3 chr6 21024195 21024497 -161390745 + AluSx SINE Alu 1 301 -11 1400 206 110 39 chr6 21024497 21024667 -161390575 + Zaphod DNA AcHobo 3875 4031 0 2148 105 7 3 chr6 21024886 21025180 -161390062 - AluSq SINE Alu -18 295 1 2281 117 0 0 chr6 21025251 21025559 -161389683 - AluSx SINE Alu -4 308 1 427 298 8 8 chr6 21025655 21025776 -161389466 - MER5B DNA MER1_type -8 170 50 957 163 0 7 chr6 21025814 21025961 -161389281 - AluSg/x SINE Alu -33 279 134 2310 47 29 4 chr6 21025962 21026236 -161389006 - AluY SINE Alu -16 295 15 2562 191 17 101 chr6 21026236 21026374 -161388868 - L1MD2 LINE L1 -65 6177 6029 255 61 0 0 chr6 21026374 21026407 -161388835 + (TG)n Simple_repeat Simple_repeat 1 33 0 2562 191 17 101 chr6 21026407 21026980 -161388262 - L1MD2 LINE L1 -213 6029 5526 659 233 98 123 chr6 21026987 21027557 -161387685 + MER34B LTR ERV1 6 561 -4 793 254 66 31 chr6 21027584 21027840 -161387402 + LTR8 LTR ERV1 2 266 -425 454 223 121 40 chr6 21027908 21028140 -161387102 + LTR8A LTR ERV1 84 461 -266 2779 169 17 27 chr6 21028148 21028741 -161386501 + pTR5 LTR ERV1 742 1328 -1110 775 179 85 113 chr6 21028741 21028773 -161386469 + LTR8A LTR ERV1 408 439 -288 3511 156 34 128 chr6 21028773 21029680 -161385562 + LTR12 LTR ERV1 5 826 0 775 179 85 113 chr6 21029680 21029976 -161385266 + LTR8A LTR ERV1 439 727 0 1239 203 12 30 chr6 21029976 21030260 -161384982 - L1MD2 LINE L1 -734 5508 5238 1624 168 0 38 chr6 21030260 21030551 -161384691 - AluJb SINE Alu -13 299 20 1239 203 12 30 chr6 21030551 21030714 -161384528 - L1MD2 LINE L1 -1004 5238 5074 375 211 11 63 chr6 21030716 21030811 -161384431 + MER21B LTR ERV1 1 90 -773 2805 233 45 33 chr6 21030940 21031465 -161383777 + MER21B LTR ERV1 98 636 -227 1520 197 139 47 chr6 21031465 21031932 -161383310 + LTR54 LTR ERV1 1 510 0 2805 233 45 33 chr6 21031932 21032111 -161383131 + MER21B LTR ERV1 636 811 -52 563 108 0 65 chr6 21032144 21032279 -161382963 - AluSp/q SINE Alu 0 313 215 2256 109 3 10 chr6 21032353 21032657 -161382585 - AluSp SINE Alu -11 302 1 595 215 49 85 chr6 21032684 21032854 -161382388 - L1MD2 LINE L1 -1118 5028 4868 1227 96 21 11 chr6 21032854 21033041 -161382201 + L1MA5 LINE L1 6108 6296 -4 595 215 49 85 chr6 21033041 21033116 -161382126 - L1MD2 LINE L1 -1278 4868 4792 692 246 89 0 chr6 21033126 21033329 -161381913 + LTR1B LTR ERV1 1 221 -605 4045 134 67 62 chr6 21033390 21034595 -161380647 - pTR5 LTR ERV1 -143 2295 749 1267 200 82 65 chr6 21034598 21035163 -161380079 + LTR1B LTR ERV1 308 1020 0 3167 158 115 13 chr6 21035178 21035787 -161379455 - LTR51 LTR ERV1 0 671 1 448 278 35 0 chr6 21035787 21035956 -161379286 - L1MD2 LINE L1 -1349 4797 4623 430 261 0 9 chr6 21035958 21036069 -161379173 - MER5B DNA MER1_type -63 115 6 289 215 0 131 chr6 21037132 21037262 -161377980 - MER5A DNA MER1_type -44 145 33 2326 100 0 28 chr6 21037414 21037735 -161377507 - AluSx SINE Alu 0 312 1 1316 241 65 34 chr6 21038504 21038919 -161376323 + MLT1D LTR MaLR 2 429 -76 7881 133 69 43 chr6 21038931 21040447 -161374795 - pTR5 LTR ERV1 -143 2295 741 183 42 0 0 chr6 21040459 21040483 -161374759 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2134 108 0 0 chr6 21040486 21040763 -161374479 - AluSx SINE Alu -32 280 4 405 123 0 15 chr6 21040767 21040832 -161374410 + MLT1D LTR MaLR 440 503 -2 242 286 137 30 chr6 21040850 21041018 -161374224 + MIR SINE MIR 67 252 -10 337 333 101 6 chr6 21041032 21041191 -161374051 - L3 LINE CR1 -36 1541 1368 24 0 0 0 chr6 21041193 21041217 -161374025 + AT_rich Low_complexity Low_complexity 1 24 0 1466 159 29 108 chr6 21041221 21041363 -161373879 - AluJo SINE Alu -22 290 185 658 29 48 0 chr6 21041363 21041468 -161373774 + (TA)n Simple_repeat Simple_repeat 2 111 0 1466 159 29 108 chr6 21041468 21041640 -161373602 - AluJo SINE Alu -127 185 1 299 226 65 54 chr6 21041708 21041801 -161373441 - MER91B DNA MER1_type -2 188 95 371 256 64 40 chr6 21041821 21041946 -161373296 - MER91B DNA MER1_type -62 128 1 232 351 37 0 chr6 21042208 21042342 -161372900 - L3 LINE CR1 -813 764 626 218 294 56 67 chr6 21042413 21042563 -161372679 - MIR SINE MIR -65 143 3 263 289 74 47 chr6 21043002 21043151 -161372091 - MIR3 SINE MIR -2 206 54 1021 269 69 94 chr6 21043273 21043793 -161371449 + MLT1K LTR MaLR 67 573 -15 183 354 0 0 chr6 21043893 21043972 -161371270 - L3 LINE CR1 -196 1381 1303 413 353 66 25 chr6 21044033 21044350 -161370892 + L3 LINE CR1 1025 1354 -223 512 122 0 14 chr6 21044350 21044455 -161370787 - AluSg/x SINE Alu 0 315 212 197 330 139 0 chr6 21044614 21044729 -161370513 + L2 LINE L2 3141 3271 -1 2378 87 3 0 chr6 21044804 21045102 -161370140 + AluSp SINE Alu 1 299 -14 2328 69 10 16 chr6 21045157 21045462 -161369780 - AluY SINE Alu -7 304 2 1836 166 3 16 chr6 21045724 21046037 -161369205 + AluJo SINE Alu 1 309 -3 951 297 58 27 chr6 21046044 21046715 -161368527 + L1ME3A LINE L1 4343 5034 -1112 1742 183 0 26 chr6 21046723 21047034 -161368208 + AluJo SINE Alu 1 303 -9 2606 176 13 74 chr6 21047047 21047599 -161367643 - MLT2B1 LTR ERVL 0 520 3 365 206 0 0 chr6 21047619 21047692 -161367550 + L1MA9 LINE L1 6240 6312 0 999 275 76 18 chr6 21047697 21048090 -161367152 + L1ME3A LINE L1 5296 5711 -451 1001 163 73 0 chr6 21048090 21048268 -161366974 + AluJo SINE Alu 121 311 -1 480 264 13 13 chr6 21048278 21048433 -161366809 + L1ME3A LINE L1 5727 5881 -289 1919 196 51 52 chr6 21048629 21048799 -161366443 - Charlie2 DNA MER1_type 0 2862 2693 1627 157 39 18 chr6 21048799 21049085 -161366157 + AluJo SINE Alu 1 292 -20 1919 196 51 52 chr6 21049085 21049563 -161365679 - Charlie2 DNA MER1_type -169 2693 2215 229 198 91 83 chr6 21049541 21049662 -161365580 - Charlie2a DNA MER1_type -1763 1099 978 * 2122 238 104 33 chr6 21049671 21050621 -161364621 - Charlie2a DNA MER1_type -1788 1074 38 1102 135 0 45 chr6 21050729 21050907 -161364335 - FRAM SINE Alu -10 166 1 302 134 15 0 chr6 21050934 21051001 -161364241 + (TA)n Simple_repeat Simple_repeat 1 68 0 2127 120 7 3 chr6 21051006 21051307 -161363935 + AluSx SINE Alu 1 302 -10 26 74 0 0 chr6 21051307 21051361 -161363881 + AT_rich Low_complexity Low_complexity 1 54 0 1531 206 59 78 chr6 21051561 21051965 -161363277 - MER39 LTR ERV1 0 707 167 864 168 27 0 chr6 21053008 21053157 -161362085 + MLT1A1 LTR MaLR 1 153 -212 2467 91 3 0 chr6 21053160 21053469 -161361773 + AluSp SINE Alu 1 310 -3 1102 114 0 72 chr6 21053469 21053662 -161361580 + AluSg/x SINE Alu 132 310 0 912 169 28 89 chr6 21053675 21053843 -161361399 + MLT1A1 LTR MaLR 166 320 -45 2240 105 7 0 chr6 21053843 21054138 -161361104 - AluSx SINE Alu -15 297 1 912 169 28 89 chr6 21054138 21054182 -161361060 + MLT1A1 LTR MaLR 320 365 0 1195 289 42 27 chr6 21054199 21054965 -161360277 + L2 LINE L2 2534 3306 -7 2363 86 17 0 chr6 21056192 21056493 -161358749 - AluSp SINE Alu -7 306 1 348 309 8 8 chr6 21056773 21056896 -161358346 - MIR SINE MIR -106 156 34 405 244 0 22 chr6 21056897 21056987 -161358255 - AluS SINE Alu -222 91 4 191 336 64 0 chr6 21058468 21058578 -161356664 + MIR SINE MIR 96 212 -50 2279 99 10 0 chr6 21058874 21059176 -161356066 - AluSx SINE Alu -7 305 1 257 200 22 33 chr6 21059265 21059445 -161355797 + (TA)n Simple_repeat Simple_repeat 1 178 0 226 234 0 16 chr6 21059767 21059831 -161355411 + (TG)n Simple_repeat Simple_repeat 1 63 0 315 0 0 0 chr6 21061478 21061513 -161353729 + (TG)n Simple_repeat Simple_repeat 2 36 0 267 31 0 0 chr6 21062875 21062907 -161352335 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 357 210 51 58 chr6 21063188 21063326 -161351916 + MIR SINE MIR 38 174 -88 365 289 56 0 chr6 21063374 21063516 -161351726 - LTR33 LTR ERVL -8 513 364 2398 78 0 0 chr6 21065022 21065317 -161349925 - AluSg SINE Alu -15 295 1 280 283 58 17 chr6 21065462 21065582 -161349660 - L2 LINE L2 -10 3303 3179 795 190 37 0 chr6 21065819 21065982 -161349260 - MER58 DNA MER1_type -2224 196 28 209 274 232 0 chr6 21066046 21066141 -161349101 + MER5A DNA MER1_type 72 188 -1 2353 106 0 0 chr6 21067009 21067311 -161347931 + AluSx SINE Alu 1 302 -10 225 192 19 19 chr6 21068213 21068265 -161346977 + CT-rich Low_complexity Low_complexity 1 52 0 1788 191 0 7 chr6 21068265 21068568 -161346674 - AluJo SINE Alu -11 301 1 249 266 124 0 chr6 21068571 21068684 -161346558 - MIR SINE MIR -116 146 20 1551 188 181 2 chr6 21069397 21069818 -161345424 - LTR54B LTR ERV1 -2 496 1 949 111 0 15 chr6 21070326 21070461 -161344781 - FLAM_C SINE Alu 0 133 1 22 80 0 0 chr6 21071232 21071282 -161343960 + AT_rich Low_complexity Low_complexity 1 50 0 35 78 0 0 chr6 21071497 21071574 -161343668 + AT_rich Low_complexity Low_complexity 1 77 0 2264 107 0 3 chr6 21071601 21071899 -161343343 + AluSx SINE Alu 1 297 -15 198 167 0 0 chr6 21072115 21072151 -161343091 + CT-rich Low_complexity Low_complexity 3 38 0 2421 148 32 17 chr6 21072273 21072678 -161342564 - LTR57 LTR ERVL 0 411 1 2324 105 0 0 chr6 21073501 21073795 -161341447 - AluSg SINE Alu -16 294 1 2209 166 20 5 chr6 21074220 21074617 -161340625 - MER57A LTR ERV1 0 403 1 2284 115 3 6 chr6 21075225 21075538 -161339704 - AluSx SINE Alu 0 312 1 271 95 0 32 chr6 21075545 21075608 -161339634 - L1MD3 LINE L1 0 7995 7935 4031 90 11 45 chr6 21075620 21076240 -161339002 - MER4A LTR ERV1 0 600 2 701 157 0 25 chr6 21076241 21076362 -161338880 + FLAM_A SINE Alu 10 127 -15 886 209 44 0 chr6 21076363 21076545 -161338697 - L1MD3 LINE L1 -49 7946 7757 879 163 48 122 chr6 21076553 21076590 -161338652 - L1MB8 LINE L1 -33 6145 6107 2342 103 0 3 chr6 21076590 21076902 -161338340 - AluSq SINE Alu 0 313 3 879 163 48 122 chr6 21076902 21077158 -161338084 - L1MB8 LINE L1 -71 6107 5874 373 338 56 5 chr6 21077155 21077371 -161337871 - L1MEd LINE L1 -5396 723 497 * 4094 129 134 155 chr6 21077752 21077841 -161337401 + L1MC3 LINE L1 6545 6634 -1151 282 56 0 0 chr6 21077841 21077877 -161337365 + (CA)n Simple_repeat Simple_repeat 1 36 0 4094 129 134 155 chr6 21077877 21078235 -161337007 + L1MC3 LINE L1 6634 6998 -787 1802 173 0 3 chr6 21078235 21078524 -161336718 + AluJb SINE Alu 6 293 -19 4094 129 134 155 chr6 21078524 21078676 -161336566 + L1MC3 LINE L1 6998 7152 -633 325 260 14 29 chr6 21078676 21078781 -161336461 + MLT1F1 LTR MaLR 45 143 -406 4094 129 134 155 chr6 21078781 21079342 -161335900 + L1MC3 LINE L1 7152 7785 0 22 0 0 0 chr6 21079498 21079520 -161335722 + AT_rich Low_complexity Low_complexity 1 22 0 2429 90 0 0 chr6 21079578 21079878 -161335364 + AluSc SINE Alu 1 300 -9 2746 26 0 3 chr6 21080177 21080487 -161334755 + AluY SINE Alu 1 309 -2 436 295 38 1 chr6 21080604 21080773 -161334469 + MIR SINE MIR 20 192 -63 429 274 16 59 chr6 21081888 21082074 -161333168 + L3 LINE CR1 1042 1219 -358 1038 201 45 19 chr6 21082091 21082434 -161332808 - MSTD LTR MaLR 0 396 1 419 271 150 19 chr6 21082434 21082641 -161332601 + L3 LINE CR1 1236 1469 -108 2236 105 6 16 chr6 21083190 21083503 -161331739 + AluSg SINE Alu 1 310 0 2329 138 32 12 chr6 21083513 21083918 -161331324 + L1MA8 LINE L1 5713 6125 -166 1213 127 0 0 chr6 21083928 21084085 -161331157 + FAM SINE Alu 11 167 -18 717 132 18 0 chr6 21084085 21084199 -161331043 + L1MA8 LINE L1 6120 6235 -56 4266 91 16 4 chr6 21084522 21085084 -161330158 + MER61E LTR ERV1 1 569 0 1885 147 25 0 chr6 21085477 21085763 -161329479 - AluJb SINE Alu -9 303 11 196 293 120 0 chr6 21086158 21086233 -161329009 - MIR SINE MIR -59 149 66 192 77 0 0 chr6 21087281 21087307 -161327935 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 1640 165 8 4 chr6 21087310 21087570 -161327672 - AluJo SINE Alu -38 274 14 436 278 42 14 chr6 21087606 21087750 -161327492 + MIR SINE MIR 68 215 -47 1786 178 82 21 chr6 21087816 21088204 -161327038 - MLT2D LTR ERVL -2 412 1 180 0 0 0 chr6 21088210 21088230 -161327012 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 1642 160 18 32 chr6 21088231 21088513 -161326729 - AluJo SINE Alu -34 278 1 288 0 0 0 chr6 21088570 21088602 -161326640 + (CA)n Simple_repeat Simple_repeat 2 33 0 2770 88 3 0 chr6 21089369 21089723 -161325519 + THE1A LTR MaLR 1 355 0 1138 157 58 4 chr6 21091040 21091354 -161323888 + MLT1A1 LTR MaLR 1 365 0 4594 86 8 18 chr6 21093533 21094161 -161321081 + L1PA11 LINE L1 5366 5987 -187 181 274 0 0 chr6 21094306 21094357 -161320885 + MIR SINE MIR 168 218 -44 1361 62 28 6 chr6 21094373 21094550 -161320692 + L1PA11 LINE L1 5994 6174 0 23 0 0 0 chr6 21094833 21094856 -161320386 + AT_rich Low_complexity Low_complexity 1 23 0 2358 67 0 3 chr6 21095684 21095969 -161319273 - AluY SINE Alu -5 306 23 834 171 0 0 chr6 21095991 21096120 -161319122 + FLAM_C SINE Alu 3 131 -12 2206 108 7 7 chr6 21096559 21096854 -161318388 + AluSx SINE Alu 1 295 -17 192 356 55 0 chr6 21097013 21097086 -161318156 - MIR SINE MIR -185 77 1 1776 188 0 0 chr6 21097185 21097477 -161317765 - AluJo SINE Alu -16 296 5 1579 174 0 66 chr6 21097579 21097711 -161317531 + AluJo SINE Alu 1 140 -172 1892 121 0 81 chr6 21097711 21098045 -161317197 + AluSx SINE Alu 1 309 0 1579 174 0 66 chr6 21098045 21098228 -161317014 + AluJo SINE Alu 140 296 -16 25 31 0 0 chr6 21098303 21098335 -161316907 + AT_rich Low_complexity Low_complexity 1 32 0 2652 184 97 14 chr6 21098698 21099254 -161315988 + MER7C DNA MER2_type 1 602 0 253 301 75 21 chr6 21099261 21099354 -161315888 - L2 LINE L2 -36 3236 3139 2176 128 3 0 chr6 21099508 21099814 -161315428 - AluSx SINE Alu -5 307 1 2777 120 31 2 chr6 21100228 21100644 -161314598 - MSTA LTR MaLR 0 428 1 219 36 0 0 chr6 21101029 21101057 -161314185 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1842 139 15 0 chr6 21101061 21101328 -161313914 - AluSg SINE Alu -37 273 3 1920 164 3 0 chr6 21101382 21101731 -161313511 - AluJo SINE Alu 0 350 1 1840 119 31 55 chr6 21101907 21102228 -161313014 - AluJo SINE Alu 0 314 1 351 0 0 0 chr6 21102551 21102590 -161312652 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 383 260 120 92 chr6 21102593 21102843 -161312399 - L2 LINE L2 -22 3250 2994 * 528 287 113 59 chr6 21102825 21103588 -161311654 - L2 LINE L2 -652 2662 1859 189 147 0 0 chr6 21103841 21103875 -161311367 + (T)n Simple_repeat Simple_repeat 1 34 0 581 231 13 0 chr6 21104632 21104788 -161310454 + C-rich Low_complexity Low_complexity 4 161 0 702 203 0 16 chr6 21104798 21104980 -161310262 + CT-rich Low_complexity Low_complexity 2 180 0 318 26 0 0 chr6 21104980 21105019 -161310223 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 981 141 0 0 chr6 21105024 21105166 -161310076 - AluSg/x SINE Alu -36 276 135 598 306 112 9 chr6 21105606 21105838 -161309404 - MIR SINE MIR 0 262 7 698 289 134 21 chr6 21105960 21106333 -161308909 + L1MC4a LINE L1 5375 5789 -2019 207 0 0 0 chr6 21106476 21106499 -161308743 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1754 165 26 23 chr6 21106509 21106818 -161308424 - AluJo SINE Alu -1 311 2 244 301 93 11 chr6 21107206 21107389 -161307853 + L1MC4a LINE L1 5793 5990 -1818 2259 120 0 0 chr6 21107722 21108022 -161307220 - AluSx SINE Alu -12 300 1 297 286 0 24 chr6 21108236 21108320 -161306922 + MIR3 SINE MIR 93 174 -34 2255 131 39 19 chr6 21108364 21108723 -161306519 - MER47A DNA MER2_type 0 366 1 302 241 15 144 chr6 21108785 21108980 -161306262 - MER5B DNA MER1_type -2 176 7 203 307 93 0 chr6 21109060 21109135 -161306107 - MIR SINE MIR -38 224 143 347 232 58 7 chr6 21109256 21109270 -161305972 + (TA)n Simple_repeat Simple_repeat 2 14 -150 309 26 0 0 chr6 21109270 21109308 -161305934 + (TG)n Simple_repeat Simple_repeat 2 39 0 347 232 58 7 chr6 21109308 21109448 -161305794 + (TA)n Simple_repeat Simple_repeat 14 164 0 448 244 16 31 chr6 21109717 21109844 -161305398 + MIR SINE MIR 21 145 -63 608 293 52 9 chr6 21109876 21110088 -161305154 + MIR SINE MIR 34 254 -8 276 221 0 159 chr6 21110837 21110950 -161304292 + MIR SINE MIR 168 262 0 2129 109 45 79 chr6 21111247 21111651 -161303591 + MLT1B LTR MaLR 1 390 0 499 310 75 5 chr6 21111736 21111949 -161303293 + MIR SINE MIR 35 262 0 3899 120 2 13 chr6 21111975 21112508 -161302734 - MER1A DNA MER1_type 0 527 1 798 154 60 0 chr6 21112886 21113035 -161302207 - L1 LINE L1 -838 5308 5151 771 95 35 9 chr6 21113687 21113803 -161301439 - L1MA7 LINE L1 0 6291 6173 1763 157 25 6 chr6 21113803 21114127 -161301115 - L1MA6 LINE L1 -252 6048 5719 1483 132 9 0 chr6 21114127 21114340 -161300902 - Charlie3 DNA MER1_type -2495 215 1 3134 176 11 5 chr6 21114349 21115280 -161299962 - L1MA6 LINE L1 -585 5706 4769 2154 127 0 0 chr6 21115302 21115602 -161299640 - AluSx SINE Alu -5 307 8 1429 199 18 31 chr6 21116196 21116482 -161298760 - AluJo SINE Alu -30 282 1 970 64 0 0 chr6 21116518 21116643 -161298599 - L1P LINE L1 -913 5233 5109 * 1064 43 51 0 chr6 21116635 21116773 -161298469 + L1P LINE L1 4241 4385 -1761 554 196 0 75 chr6 21116760 21116893 -161298349 - L1M3 LINE L1 -631 5552 5430 * 1134 215 35 101 chr6 21117166 21117194 -161298048 - MER93a LTR ERV1 0 402 374 2526 50 0 10 chr6 21117194 21117496 -161297746 - AluY SINE Alu -12 299 1 1134 215 35 101 chr6 21117496 21117891 -161297351 - MER93a LTR ERV1 -28 374 7 296 304 0 0 chr6 21117912 21118004 -161297238 - MIR3 SINE MIR -5 203 112 953 203 0 36 chr6 21118151 21118343 -161296899 - MER5A DNA MER1_type -2 187 3 2397 96 0 3 chr6 21118920 21119233 -161296009 - AluSx SINE Alu 0 312 1 2396 43 0 7 chr6 21120349 21120674 -161294568 + AluY SINE Alu 1 323 0 240 59 0 0 chr6 21121093 21121127 -161294115 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2164 114 0 19 chr6 21121129 21121444 -161293798 - AluSx SINE Alu -3 309 1 256 262 0 0 chr6 21122532 21122593 -161292649 + L1ME1 LINE L1 5704 5764 -400 2076 108 3 63 chr6 21122601 21122933 -161292309 + AluSx SINE Alu 1 312 0 441 257 144 44 chr6 21122934 21123248 -161291994 + L1ME1 LINE L1 5813 6334 0 562 231 8 8 chr6 21123421 21123538 -161291704 + L2 LINE L2 3195 3311 -2 2414 87 0 10 chr6 21124350 21124662 -161290580 - AluSc SINE Alu 0 309 1 220 267 205 31 chr6 21124785 21124946 -161290296 + MIR3 SINE MIR 20 208 0 1846 169 10 3 chr6 21125055 21125345 -161289897 - AluSx SINE Alu -20 292 1 24 77 0 0 chr6 21125632 21125684 -161289558 + AT_rich Low_complexity Low_complexity 1 52 0 359 247 184 32 chr6 21125755 21125829 -161289413 - L1ME3A LINE L1 -51 6119 6058 2244 101 7 0 chr6 21125829 21126125 -161289117 - AluSp SINE Alu -15 298 1 359 247 184 32 chr6 21126125 21126208 -161289034 - L1ME3A LINE L1 -112 6058 5938 2769 90 31 8 chr6 21126235 21126591 -161288651 - THE1B LTR MaLR 0 364 1 200 268 10 62 chr6 21127387 21127484 -161287758 - L2 LINE L2 -1 3271 3180 252 367 44 29 chr6 21127626 21127938 -161287304 - L2 LINE L2 -234 3038 2725 260 277 0 46 chr6 21127982 21128047 -161287195 - L2 LINE L2 -73 3199 3138 1580 175 80 30 chr6 21128060 21128398 -161286844 - MLT1A1 LTR MaLR 0 365 11 332 260 130 18 chr6 21128578 21128747 -161286495 - L2 LINE L2 -1155 2159 1972 293 270 79 0 chr6 21128885 21128974 -161286268 + MER5B DNA MER1_type 83 178 0 181 270 45 45 chr6 21128974 21129056 -161286186 - L2 LINE L2 -697 2617 2536 1109 205 29 9 chr6 21129463 21129673 -161285569 + MER58A DNA MER1_type 11 224 0 1657 104 97 15 chr6 21129711 21129970 -161285272 - L1PA13 LINE L1 -3 6160 5881 2150 122 7 0 chr6 21130737 21131031 -161284211 + AluSx SINE Alu 5 300 -12 196 264 14 56 chr6 21131166 21131238 -161284004 + L2 LINE L2 3226 3294 -19 219 268 145 14 chr6 21131651 21131789 -161283453 + L2 LINE L2 2539 2694 -620 1774 151 6 80 chr6 21131796 21132133 -161283109 + AluJo SINE Alu 1 312 0 436 325 18 12 chr6 21132246 21132409 -161282833 + L2 LINE L2 2895 3058 -214 3094 147 55 6 chr6 21132650 21133141 -161282101 - MLT2B2 LTR ERVL 0 515 1 2246 127 3 3 chr6 21133628 21133936 -161281306 + AluJb SINE Alu 1 308 -4 1808 169 52 92 chr6 21133965 21134079 -161281163 + MLT1C LTR MaLR 6 123 -344 1616 141 85 7 chr6 21134079 21134362 -161280880 + AluSx SINE Alu 1 305 -7 1808 169 52 92 chr6 21134362 21134725 -161280517 + MLT1C LTR MaLR 123 464 -3 234 0 0 0 chr6 21135739 21135765 -161279477 + (TG)n Simple_repeat Simple_repeat 2 27 0 719 239 150 45 chr6 21136228 21136541 -161278701 + L1ME4a LINE L1 5496 5838 -283 195 42 0 0 chr6 21138559 21138583 -161276659 + (A)n Simple_repeat Simple_repeat 1 24 0 24 53 0 0 chr6 21138968 21139006 -161276236 + AT_rich Low_complexity Low_complexity 1 38 0 984 272 98 39 chr6 21139226 21139664 -161275578 - LTR16B LTR ERVL 0 464 1 1385 213 115 18 chr6 21140606 21141006 -161274236 - L1M4 LINE L1 -846 5300 4862 464 295 90 6 chr6 21141246 21141306 -161273936 - MER5A DNA MER1_type -6 183 129 1711 169 8 0 chr6 21141306 21141573 -161273669 + AluJb SINE Alu 5 273 -39 464 295 90 6 chr6 21141573 21141668 -161273574 - MER5A DNA MER1_type -60 129 15 3071 76 0 13 chr6 21141859 21142239 -161273003 - THE1C LTR MaLR 0 375 1 2297 72 0 4 chr6 21142830 21143108 -161272134 + AluSg SINE Alu 1 277 -33 234 0 0 0 chr6 21143108 21143134 -161272108 + (CAA)n Simple_repeat Simple_repeat 2 27 0 616 216 27 0 chr6 21143548 21143659 -161271583 + MER81 DNA DNA 1 114 0 22 0 0 0 chr6 21144222 21144244 -161270998 + AT_rich Low_complexity Low_complexity 1 22 0 783 285 29 22 chr6 21144796 21145070 -161270172 - L1MC4a LINE L1 -1936 5872 5597 3436 136 23 11 chr6 21145580 21146101 -161269141 - MER1A DNA MER1_type 0 527 1 320 304 9 9 chr6 21148095 21148210 -161267032 - MIR SINE MIR -19 243 129 2323 78 3 7 chr6 21149413 21149708 -161265534 - AluY SINE Alu -17 294 1 30 0 0 0 chr6 21150323 21150353 -161264889 + AT_rich Low_complexity Low_complexity 1 30 0 1668 190 7 0 chr6 21150353 21150643 -161264599 + AluSx SINE Alu 1 292 -20 1166 129 36 0 chr6 21150648 21150842 -161264400 - L1MB3 LINE L1 0 6183 5983 2333 97 0 0 chr6 21151310 21151600 -161263642 - AluSq SINE Alu -23 290 1 222 319 56 76 chr6 21152736 21152796 -161262446 + MIR SINE MIR 24 84 -178 1894 96 4 11 chr6 21152796 21153057 -161262185 - AluSq SINE Alu -15 298 40 222 319 56 76 chr6 21153057 21153140 -161262102 + MIR SINE MIR 84 164 -98 * 501 341 24 20 chr6 21153125 21153371 -161261871 - MIR SINE MIR 0 262 16 294 29 0 0 chr6 21153458 21153493 -161261749 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 314 120 39 chr6 21154267 21154550 -161260692 + L2 LINE L2 2177 2482 -832 181 214 24 0 chr6 21156180 21156222 -161259020 - L2 LINE L2 -8 3305 3263 207 277 0 0 chr6 21156939 21156986 -161258256 + CT-rich Low_complexity Low_complexity 3 49 0 2361 90 3 0 chr6 21157123 21157433 -161257809 - AluSq SINE Alu -2 311 1 581 249 65 54 chr6 21158429 21158580 -161256662 - MIR SINE MIR -74 188 33 2241 119 0 3 chr6 21158580 21158882 -161256360 - AluSx SINE Alu -11 301 1 581 249 65 54 chr6 21158882 21158915 -161256327 - MIR SINE MIR -229 33 2 241 57 57 43 chr6 21159623 21159693 -161255549 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 455 229 51 0 chr6 21161452 21161570 -161253672 - L2 LINE L2 0 3313 3190 624 91 0 0 chr6 21161589 21161677 -161253565 + (TA)n Simple_repeat Simple_repeat 2 89 0 454 264 36 7 chr6 21162380 21162520 -161252722 + MIR SINE MIR 113 256 -6 262 265 0 39 chr6 21162561 21162663 -161252579 + L1ME LINE L1 5647 5744 -377 198 0 0 0 chr6 21162930 21162952 -161252290 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1913 161 0 10 chr6 21162967 21163266 -161251976 + AluJo SINE Alu 1 296 -16 2415 78 0 3 chr6 21163274 21163580 -161251662 + AluSg SINE Alu 1 305 -5 485 261 22 72 chr6 21164573 21164753 -161250489 + MIR SINE MIR 82 252 -10 590 216 0 16 chr6 21165235 21165360 -161249882 + MER3 DNA MER1_type 77 199 -10 341 330 74 83 chr6 21165798 21166137 -161249105 - L2 LINE L2 -27 3245 2910 260 321 71 9 chr6 21166260 21166372 -161248870 - MIR SINE MIR -96 166 48 889 199 0 79 chr6 21166732 21166761 -161248481 + MER3 DNA MER1_type 1 31 -178 2184 113 0 3 chr6 21166761 21167053 -161248189 + AluSg SINE Alu 1 291 -19 889 199 0 79 chr6 21167053 21167239 -161248003 + MER3 DNA MER1_type 31 199 -10 1629 147 9 59 chr6 21167680 21168000 -161247242 - AluJo SINE Alu -8 304 1 266 313 146 0 chr6 21168030 21168126 -161247116 + L2 LINE L2 3151 3260 -12 358 305 8 15 chr6 21168347 21168478 -161246764 - MER94 DNA DNA 0 134 5 7460 117 52 29 chr6 21169198 21169756 -161245486 - Tigger3b DNA MER2_type -1797 1231 688 2108 104 18 0 chr6 21169756 21170071 -161245171 + AluSp SINE Alu 1 320 0 7460 117 52 29 chr6 21170071 21170711 -161244531 - Tigger3b DNA MER2_type -2340 688 3 2945 0 0 0 chr6 21171338 21171649 -161243593 - AluYa5 SINE Alu 0 311 1 290 227 53 27 chr6 21174037 21174112 -161241130 - MER5B DNA MER1_type -6 172 96 * 297 330 43 0 chr6 21174106 21174200 -161241042 + L2 LINE L2 3173 3270 -2 214 349 64 0 chr6 21174418 21174527 -161240715 - L2 LINE L2 0 3272 3157 343 263 88 9 chr6 21175062 21175176 -161240066 - MIR SINE MIR -114 148 26 550 226 8 16 chr6 21176078 21176202 -161239040 - MER5B DNA MER1_type -55 123 1 268 275 0 84 chr6 21176215 21176346 -161238896 - MIR SINE MIR -67 141 22 2242 138 32 19 chr6 21177836 21178039 -161237203 - MLT1B LTR MaLR -11 379 167 2221 111 7 7 chr6 21178039 21178345 -161236897 - AluSx SINE Alu -6 306 1 2242 138 32 19 chr6 21178345 21178512 -161236730 - MLT1B LTR MaLR -223 167 4 249 313 35 17 chr6 21178677 21178792 -161236450 - L1MC/D LINE L1 -2247 5561 5445 2075 122 3 3 chr6 21178818 21179106 -161236136 + AluSg SINE Alu 1 288 -22 386 252 30 23 chr6 21179239 21179370 -161235872 - L1ME4a LINE L1 -252 5869 5738 207 100 0 0 chr6 21179971 21180001 -161235241 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 222 118 0 0 chr6 21181319 21181353 -161233889 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 2272 92 0 3 chr6 21181400 21181695 -161233547 - AluSg SINE Alu -7 303 10 219 355 65 18 chr6 21181850 21182019 -161233223 + MIR SINE MIR 20 196 -66 228 361 34 0 chr6 21182082 21182201 -161233041 + MIR3 SINE MIR 85 207 -1 2095 114 0 4 chr6 21182428 21182709 -161232533 - AluSx SINE Alu -32 280 1 292 328 18 47 chr6 21183157 21183328 -161231914 - MIR SINE MIR -50 212 47 1926 130 22 0 chr6 21183392 21183695 -161231547 + AluSx SINE Alu 1 309 0 993 279 108 16 chr6 21183883 21184316 -161230926 - LTR16C LTR ERVL -1 490 18 2225 123 0 0 chr6 21184735 21185045 -161230197 + AluY SINE Alu 1 310 -1 25 31 0 0 chr6 21185100 21185132 -161230110 + AT_rich Low_complexity Low_complexity 1 32 0 2557 268 104 36 chr6 21185177 21186442 -161228800 + L1ME3A LINE L1 2970 4321 -1825 727 236 66 39 chr6 21186472 21186730 -161228512 + L1ME3A LINE L1 5879 6143 -27 438 33 115 0 chr6 21186899 21186960 -161228282 + MADE1 DNA Mariner 13 80 0 1204 245 129 68 chr6 21187220 21188050 -161227192 - HAL1 LINE L1 -79 2428 1548 607 236 60 6 chr6 21188132 21188314 -161226928 - HAL1 LINE L1 -1089 1418 1227 536 358 54 15 chr6 21188513 21188829 -161226413 - L2 LINE L2 -260 3053 2725 3105 179 52 92 chr6 21188837 21189684 -161225558 + L1MC4 LINE L1 7221 8033 -9 885 298 174 13 chr6 21189687 21190217 -161225025 - L2 LINE L2 -609 2705 2091 2738 98 11 0 chr6 21191203 21191560 -161223682 - L1PB1 LINE L1 0 6151 5791 250 93 0 0 chr6 21191570 21191613 -161223629 + LTR66 LTR ERVL 394 436 -174 273 234 0 0 chr6 21191615 21191679 -161223563 + L1MC4 LINE L1 6640 6703 -1339 252 220 0 0 chr6 21191637 21191687 -161223555 - L1MC4 LINE L1 -1339 6703 6654 * 218 220 17 0 chr6 21191721 21191780 -161223462 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 3232 82 7 7 chr6 21191780 21192209 -161223033 - L1P5 LINE L1 -360 5791 5363 230 93 0 23 chr6 21192209 21192252 -161222990 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 7683 27 0 0 chr6 21192252 21193689 -161221553 - L1PA3 LINE L1 -24 6131 4695 * 15037 173 35 12 chr6 21193677 21198352 -161216890 - L1PBa LINE L1 -771 6091 1311 3112 151 13 17 chr6 21198354 21198878 -161216364 - L1PBa LINE L1 -5708 1155 634 1147 150 26 0 chr6 21198878 21199071 -161216171 - L1PBa LINE L1 -6663 200 3 214 234 21 0 chr6 21199118 21199165 -161216077 + L2 LINE L2 3219 3266 -6 316 285 16 24 chr6 21199339 21199462 -161215780 - MIR SINE MIR -77 185 64 536 309 14 24 chr6 21199734 21199941 -161215301 + MIR SINE MIR 46 250 -12 1778 160 38 7 chr6 21200202 21200495 -161214747 + AluJb SINE Alu 1 302 -10 1839 170 150 42 chr6 21200530 21200982 -161214260 + MLT1D LTR MaLR 4 504 -1 332 260 24 65 chr6 21201021 21201144 -161214098 + L2 LINE L2 2602 2719 -595 263 279 35 0 chr6 21201173 21201259 -161213983 + L2 LINE L2 3183 3271 -1 594 184 0 0 chr6 21201339 21201437 -161213805 - Tigger7 DNA MER2_type 0 2491 2394 1575 192 0 0 chr6 21201440 21201701 -161213541 - Tigger7 DNA MER2_type -469 264 4 230 271 0 24 chr6 21201705 21201790 -161213452 - HAL1b LINE L1 -91 1257 1175 2177 205 93 17 chr6 21202774 21203257 -161211985 - MLT2B1 LTR ERVL 0 520 1 299 291 28 44 chr6 21203499 21203681 -161211561 - L1ME4a LINE L1 -215 5906 5728 216 163 0 0 chr6 21205051 21205094 -161210148 + (CAA)n Simple_repeat Simple_repeat 3 45 0 183 344 33 0 chr6 21205260 21205321 -161209921 + L3 LINE CR1 1514 1576 -1 245 296 0 37 chr6 21205734 21205815 -161209427 - L2 LINE L2 -13 3259 3182 815 155 14 0 chr6 21205924 21206066 -161209176 + L1MA6 LINE L1 6155 6298 -2 2100 256 46 11 chr6 21206225 21206275 -161208967 - L1MD2 LINE L1 -396 5963 5916 2348 165 64 12 chr6 21206275 21206680 -161208562 + MSTB LTR MaLR 1 426 0 2100 256 46 11 chr6 21206680 21207239 -161208003 - L1MD2 LINE L1 -443 5916 5333 212 172 52 0 chr6 21207239 21207297 -161207945 + (TA)n Simple_repeat Simple_repeat 2 62 0 341 234 206 9 chr6 21208107 21208214 -161207028 - MIR SINE MIR -115 147 20 1118 179 115 8 chr6 21210331 21210566 -161204676 + LOR1a LTR ERV1 238 497 0 1724 186 7 10 chr6 21211423 21211718 -161203524 + AluJo SINE Alu 1 294 -18 1536 184 223 39 chr6 21211958 21212415 -161202827 - MLT1F LTR MaLR 0 542 2 405 58 0 0 chr6 21212420 21212472 -161202770 + (TG)n Simple_repeat Simple_repeat 2 53 0 180 375 31 10 chr6 21212688 21212784 -161202458 + L2 LINE L2 3015 3112 -160 240 35 0 0 chr6 21213039 21213068 -161202174 + (CAT)n Simple_repeat Simple_repeat 1 29 0 476 308 110 9 chr6 21213792 21214019 -161201223 - MIR SINE MIR -1 261 12 2406 100 0 0 chr6 21215322 21215632 -161199610 - AluSx SINE Alu -2 310 1 896 149 0 8 chr6 21217885 21218041 -161197201 - AluJb SINE Alu 0 309 155 234 0 0 0 chr6 21218161 21218187 -161197055 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 288 0 0 0 chr6 21218186 21218218 -161197024 + (CA)n Simple_repeat Simple_repeat 1 32 0 1530 190 13 30 chr6 21218777 21219082 -161196160 - AluJo SINE Alu -12 300 1 2341 114 0 0 chr6 21219805 21220111 -161195131 - AluSx SINE Alu -6 306 1 231 36 0 0 chr6 21220427 21220455 -161194787 + (TC)n Simple_repeat Simple_repeat 1 28 0 221 57 29 0 chr6 21220970 21221005 -161194237 + (TG)n Simple_repeat Simple_repeat 1 36 0 2278 100 0 17 chr6 21221080 21221380 -161193862 - AluSq SINE Alu -18 295 1 2357 117 10 0 chr6 21223693 21224002 -161191240 + AluSx SINE Alu 1 312 0 894 144 63 0 chr6 21224542 21224716 -161190526 + L1MA7 LINE L1 6104 6288 -3 1343 183 48 41 chr6 21225249 21225539 -161189703 - AluJo SINE Alu -20 292 1 214 282 209 9 chr6 21225763 21225873 -161189369 - MIR SINE MIR -44 218 87 258 312 118 0 chr6 21227683 21227776 -161187466 + MIR SINE MIR 49 152 -110 195 139 0 0 chr6 21228602 21228638 -161186604 + (T)n Simple_repeat Simple_repeat 1 36 0 2396 281 24 25 chr6 21228671 21229346 -161185896 + MER115 DNA AcHobo 3 676 -17 4858 111 0 0 chr6 21229569 21230246 -161184996 + L1PA13 LINE L1 5448 6124 -39 186 350 88 10 chr6 21230259 21230453 -161184789 + L2 LINE L2 2624 2832 -482 191 326 14 64 chr6 21232190 21232331 -161182911 + L2 LINE L2 2753 2886 -428 261 0 0 0 chr6 21232331 21232360 -161182882 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 527 252 91 24 chr6 21232363 21232573 -161182669 + MLT1G1 LTR MaLR 103 326 -269 701 271 21 5 chr6 21232799 21232991 -161182251 + MIR SINE MIR 53 247 -15 2335 71 0 0 chr6 21233499 21233814 -161181428 - AluY SINE Alu 0 315 1 404 291 122 5 chr6 21235027 21235223 -161180019 - MIR SINE MIR -15 247 29 1479 249 25 6 chr6 21235253 21235611 -161179631 - MLT1A1 LTR MaLR 0 365 1 196 346 13 13 chr6 21235931 21236009 -161179233 - MER5B DNA MER1_type -45 133 56 321 183 28 4 chr6 21236031 21236141 -161179101 - MER5A DNA MER1_type 0 189 35 238 262 47 84 chr6 21236140 21236247 -161178995 - MER5B DNA MER1_type -74 104 2 * 294 277 45 23 chr6 21236429 21236567 -161178675 + MIR3 SINE MIR 45 186 -22 349 247 160 40 chr6 21237441 21237591 -161177651 + MER5A DNA MER1_type 13 180 -9 1740 157 3 42 chr6 21238070 21238382 -161176860 - MLT1B LTR MaLR 0 390 91 416 143 0 0 chr6 21238384 21238447 -161176795 - MLT1C LTR MaLR -115 352 290 * 463 188 27 89 chr6 21238438 21238550 -161176692 - MLT1C LTR MaLR -362 105 1 201 39 0 0 chr6 21239198 21239224 -161176018 + (CA)n Simple_repeat Simple_repeat 2 27 0 4269 132 59 48 chr6 21240027 21240280 -161174962 - pTR5 LTR ERV1 -25 2212 1963 187 53 26 26 chr6 21240280 21240318 -161174924 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4269 132 59 48 chr6 21240318 21241309 -161173933 - pTR5 LTR ERV1 -274 1963 7 2041 101 18 0 chr6 21241310 21241586 -161173656 + AluSp SINE Alu 32 312 -1 886 198 184 43 chr6 21241659 21242096 -161173146 - MLT1E1 LTR MaLR -74 580 1 3633 170 32 17 chr6 21243142 21243865 -161171377 + L1MB4 LINE L1 5446 6179 -1 181 233 47 35 chr6 21244208 21244294 -161170948 + L3b LINE CR1 1146 1232 -351 263 238 70 98 chr6 21244313 21244456 -161170786 + MIR3 SINE MIR 20 158 -50 243 311 17 25 chr6 21244460 21244579 -161170663 - L2 LINE L2 0 3272 3155 226 200 30 80 chr6 21244903 21245003 -161170239 - L2 LINE L2 -656 2658 2564 252 0 0 0 chr6 21245699 21245727 -161169515 + (GA)n Simple_repeat Simple_repeat 2 29 0 207 69 0 0 chr6 21245930 21245959 -161169283 + (TG)n Simple_repeat Simple_repeat 1 29 0 391 228 101 13 chr6 21246026 21246175 -161169067 - L1ME3A LINE L1 -96 6074 5913 2653 68 0 0 chr6 21246415 21246724 -161168518 + AluSg SINE Alu 1 309 -1 469 183 70 9 chr6 21246929 21247044 -161168198 - MIR SINE MIR -62 200 79 26 30 0 0 chr6 21247165 21247198 -161168044 + AT_rich Low_complexity Low_complexity 1 33 0 463 286 54 112 chr6 21247258 21247706 -161167536 - L2 LINE L2 -42 3230 2809 3666 125 68 25 chr6 21249137 21250042 -161165200 - LTR12 LTR ERV1 0 714 3 1651 175 14 20 chr6 21250042 21250334 -161164908 + AluJo SINE Alu 10 299 -13 2081 173 68 5 chr6 21250340 21250739 -161164503 - MSTA LTR MaLR 0 428 5 451 224 75 9 chr6 21251018 21251182 -161164060 - MIR SINE MIR -63 145 20 2208 128 0 0 chr6 21251974 21252278 -161162964 - AluSx SINE Alu -8 304 1 867 156 25 0 chr6 21252289 21252449 -161162793 - L1MA8 LINE L1 -4 6287 6124 5545 125 36 19 chr6 21252593 21252914 -161162328 - L1MA8 LINE L1 -148 6143 5829 2233 97 0 31 chr6 21252914 21253097 -161162145 - AluSx SINE Alu -1 311 141 2298 95 3 0 chr6 21253097 21253392 -161161850 - AluY SINE Alu -15 296 1 2233 97 0 31 chr6 21253392 21253529 -161161713 - AluSx SINE Alu -171 141 1 5545 125 36 19 chr6 21253529 21254410 -161160832 - L1MA8 LINE L1 -462 5829 4906 2349 174 47 2 chr6 21254410 21254818 -161160424 + MSTB LTR MaLR 1 426 0 5545 125 36 19 chr6 21254818 21255049 -161160193 - L1MA8 LINE L1 -1385 4906 4680 298 272 56 16 chr6 21255449 21255574 -161159668 + MIR SINE MIR 71 200 -62 232 326 79 11 chr6 21257098 21257122 -161158120 + L3 LINE CR1 1425 1446 -131 2175 111 14 3 chr6 21257122 21257419 -161157823 + AluSx SINE Alu 1 300 -12 232 326 79 11 chr6 21257419 21257483 -161157759 + L3 LINE CR1 1446 1519 -58 480 328 37 31 chr6 21258682 21259139 -161156103 + L1MC4a LINE L1 5491 5950 -1858 382 114 29 0 chr6 21260588 21260658 -161154584 + (CA)n Simple_repeat Simple_repeat 1 72 0 1351 218 65 40 chr6 21260908 21261354 -161153888 - MLT1C LTR MaLR 0 467 11 437 299 82 90 chr6 21261386 21261693 -161153549 + L2 LINE L2 2724 3017 -255 371 68 0 243 chr6 21261693 21261796 -161153446 - MADE1 DNA Mariner -2 78 1 437 299 82 90 chr6 21261796 21262050 -161153192 + L2 LINE L2 3017 3271 -1 521 298 48 27 chr6 21263214 21263402 -161151840 - MIR SINE MIR -70 192 1 2160 119 0 0 chr6 21263428 21263722 -161151520 + AluSq SINE Alu 1 294 -19 500 179 19 0 chr6 21263722 21263828 -161151414 + (TATG)n Simple_repeat Simple_repeat 2 109 0 382 301 38 0 chr6 21264208 21264341 -161150901 + MIR3 SINE MIR 68 205 -3 222 62 0 0 chr6 21265041 21265073 -161150169 + (T)n Simple_repeat Simple_repeat 1 32 0 622 201 12 0 chr6 21265366 21265535 -161149707 - L1MA4 LINE L1 -8 6292 6122 359 303 56 43 chr6 21266406 21266710 -161148532 + L1ME4a LINE L1 5525 5832 -289 267 200 9 55 chr6 21266793 21266903 -161148339 + (TA)n Simple_repeat Simple_repeat 1 105 0 335 307 80 9 chr6 21267058 21267187 -161148055 + MIR SINE MIR 23 143 -65 228 256 23 12 chr6 21267297 21267383 -161147859 - L1ME LINE L1 -734 5436 5350 22 0 0 0 chr6 21267517 21267539 -161147703 + AT_rich Low_complexity Low_complexity 1 22 0 344 215 89 0 chr6 21267668 21267747 -161147495 + MER5A DNA MER1_type 9 94 -95 2227 111 0 19 chr6 21268272 21268579 -161146663 - AluSc SINE Alu -8 301 1 1872 121 24 113 chr6 21269146 21269560 -161145682 - MLT1B LTR MaLR -5 385 9 1195 230 94 40 chr6 21270503 21270877 -161144365 - MSTD LTR MaLR -2 394 1 1953 138 3 0 chr6 21270960 21271274 -161143968 - AluSx SINE Alu 0 315 1 437 329 21 0 chr6 21271658 21271801 -161143441 + MIR SINE MIR 1 146 -116 2625 241 123 14 chr6 21272338 21273236 -161142006 - MER69B DNA AcHobo -2 1224 230 295 269 13 0 chr6 21273240 21273318 -161141924 - MER69B DNA AcHobo -1124 102 24 1199 205 73 80 chr6 21273328 21273752 -161141490 - MLT1J1 LTR MaLR -25 421 1 2240 78 0 0 chr6 21275179 21275474 -161139768 + AluY SINE Alu 11 305 0 3588 148 56 3 chr6 21275479 21276142 -161139100 - L1MB3 LINE L1 -2 6181 5484 672 174 19 7 chr6 21276142 21276297 -161138945 + CT-rich Low_complexity Low_complexity 3 159 0 921 149 41 10 chr6 21276302 21276497 -161138745 - L1MB3 LINE L1 -691 5489 5289 207 277 0 0 chr6 21276954 21277001 -161138241 - L2 LINE L2 -9 3304 3258 1906 202 31 75 chr6 21279051 21279665 -161135577 + L1ME2 LINE L1 5578 6164 0 23 33 0 0 chr6 21279674 21279704 -161135538 + AT_rich Low_complexity Low_complexity 1 30 0 217 384 75 8 chr6 21279769 21279902 -161135340 - MER5A DNA MER1_type -2 187 46 308 361 101 12 chr6 21280341 21280510 -161134732 + L2 LINE L2 2869 3052 -220 378 329 89 14 chr6 21280757 21280903 -161134339 + L2 LINE L2 3116 3272 0 352 221 123 41 chr6 21281179 21281301 -161133941 + MIR SINE MIR 20 151 -111 197 250 39 39 chr6 21281902 21281954 -161133288 - MIR SINE MIR -193 69 18 835 208 58 0 chr6 21282037 21282210 -161133032 + MER5A DNA MER1_type 1 183 -6 302 318 246 17 chr6 21283638 21283874 -161131368 - L3 LINE CR1 -9 1568 1279 305 333 8 24 chr6 21283875 21283998 -161131244 - L3 LINE CR1 -427 1150 1030 698 248 44 26 chr6 21284076 21284302 -161130940 - L1ME1 LINE L1 -5 6161 5932 238 284 15 15 chr6 21285070 21285137 -161130105 + MIR SINE MIR 17 83 -125 384 184 0 0 chr6 21285173 21285249 -161129993 + MER53 DNA DNA 1 76 -113 397 359 29 6 chr6 21286816 21286986 -161128256 - MIR3 SINE MIR -3 205 32 246 326 69 29 chr6 21287003 21287178 -161128064 + MIR SINE MIR 14 195 -67 1215 275 64 30 chr6 21287188 21287728 -161127514 - MLT1F1 LTR MaLR 0 567 11 483 236 115 30 chr6 21288324 21288489 -161126753 + MER5A DNA MER1_type 7 185 -4 343 227 43 64 chr6 21288586 21288727 -161126515 - MER104 DNA Tc2 -15 165 28 2315 108 3 0 chr6 21288850 21289155 -161126087 - AluSq SINE Alu -7 306 1 554 239 76 35 chr6 21289168 21289365 -161125877 - L2 LINE L2 0 3313 3109 22 35 0 0 chr6 21291588 21291617 -161123625 + AT_rich Low_complexity Low_complexity 1 29 0 439 355 55 11 chr6 21291685 21291868 -161123374 + MIR SINE MIR 41 231 -31 185 302 0 23 chr6 21291834 21291877 -161123365 + L2 LINE L2 3203 3244 -28 * 324 214 96 86 chr6 21291985 21292172 -161123070 - L1ME4a LINE L1 -1 6120 5932 351 268 173 25 chr6 21292248 21292606 -161122636 - L1ME4a LINE L1 -227 5894 5484 417 198 0 10 chr6 21293967 21294068 -161121174 + L1M4 LINE L1 3937 4036 -2110 417 306 62 59 chr6 21294168 21294335 -161120907 - L2 LINE L2 -527 2787 2617 2029 134 7 7 chr6 21294335 21294634 -161120608 + AluJb SINE Alu 1 299 -13 417 306 62 59 chr6 21294634 21294790 -161120452 - L2 LINE L2 -697 2617 2463 434 257 70 12 chr6 21299013 21299184 -161116058 + MIR SINE MIR 82 262 0 356 299 48 30 chr6 21299709 21299876 -161115366 + LTR67 LTR ERVL 24 193 -364 180 0 0 0 chr6 21299948 21299968 -161115274 + (TTG)n Simple_repeat Simple_repeat 2 21 0 256 164 0 73 chr6 21300001 21300056 -161115186 - FRAM/FAM SINE Alu -134 41 1 367 304 22 7 chr6 21300144 21300279 -161114963 + LTR67 LTR ERVL 415 551 -6 1989 154 30 0 chr6 21300279 21300578 -161114664 + AluJb SINE Alu 1 308 -4 365 293 38 38 chr6 21301006 21301245 -161113997 + MLT1L LTR MaLR 369 607 -8 639 207 70 18 chr6 21301290 21301517 -161113725 - HsTC2 DNA Tc2 -28 1870 1632 567 290 36 10 chr6 21301511 21301704 -161113538 + LTR33 LTR ERVL 9 206 -315 * 400 263 8 8 chr6 21301913 21302031 -161113211 - HsTC2 DNA Tc2 -263 1635 1518 225 239 0 0 chr6 21302391 21302437 -161112805 - L2 LINE L2 -13 3300 3255 838 246 12 74 chr6 21302681 21302873 -161112369 + MIR SINE MIR 20 194 -68 2168 88 0 67 chr6 21302873 21303203 -161112039 + AluSg SINE Alu 1 308 -2 838 246 12 74 chr6 21303203 21303266 -161111976 + MIR SINE MIR 194 259 -3 300 254 82 9 chr6 21303835 21303945 -161111297 + MER5C DNA MER1_type 6 123 -201 263 77 0 77 chr6 21304104 21304156 -161111086 + MER5C DNA MER1_type 262 309 -15 354 316 63 57 chr6 21304233 21304391 -161110851 - MER91A DNA MER1_type -34 162 4 625 249 153 68 chr6 21304769 21305227 -161110015 + MLT1H LTR MaLR 44 540 -9 2134 102 13 7 chr6 21305333 21305636 -161109606 - AluSc SINE Alu -4 305 1 623 74 0 21 chr6 21305774 21305869 -161109373 + AluSg/x SINE Alu 214 306 -3 2397 84 0 0 chr6 21305869 21306180 -161109062 + AluY SINE Alu 1 311 0 2210 104 0 13 chr6 21306290 21306599 -161108643 + AluY SINE Alu 1 305 -6 2159 145 3 0 chr6 21306626 21306937 -161108305 + AluSq SINE Alu 2 313 0 2151 118 7 3 chr6 21309762 21310058 -161105184 + AluSx SINE Alu 1 297 -15 2113 186 89 43 chr6 21310579 21311062 -161104180 - MLT1D LTR MaLR 0 505 1 263 311 19 0 chr6 21311097 21311200 -161104042 + LTR37B LTR ERV1 16 120 -348 404 119 0 0 chr6 21311337 21311404 -161103838 + L1PA11 LINE L1 6108 6174 0 690 176 109 114 chr6 21311512 21311888 -161103354 + LTR37B LTR ERV1 95 468 0 23 0 0 0 chr6 21314842 21314865 -161100377 + AT_rich Low_complexity Low_complexity 1 23 0 258 254 52 45 chr6 21314873 21315007 -161100235 - MLT1J LTR MaLR -3 508 374 3202 19 5 0 chr6 21315092 21315462 -161099780 - L1PA4 LINE L1 0 6155 5784 527 255 150 45 chr6 21315852 21315994 -161099248 + MER102b DNA MER1_type 5 131 -1297 1931 133 3 3 chr6 21315994 21316280 -161098962 + AluSx SINE Alu 26 311 -1 527 255 150 45 chr6 21316280 21316423 -161098819 + MER102b DNA MER1_type 131 320 -21 2505 82 0 0 chr6 21317037 21317341 -161097901 + AluSc SINE Alu 1 304 -5 591 290 111 14 chr6 21317710 21317732 -161097510 - MIR SINE MIR -10 252 234 1759 159 36 28 chr6 21317732 21318090 -161097152 + MER46B DNA MER2_type 1 236 0 591 290 111 14 chr6 21318090 21318284 -161096958 - MIR SINE MIR -28 234 15 2085 134 3 0 chr6 21318415 21318707 -161096535 + AluSx SINE Alu 1 293 -19 587 311 109 0 chr6 21318879 21319117 -161096125 - L2 LINE L2 -1228 2086 1823 595 325 60 15 chr6 21319126 21319461 -161095781 + L1MEd LINE L1 11 360 -5759 1030 275 149 31 chr6 21319469 21320212 -161095030 + L1MEd LINE L1 409 1239 -4880 7343 159 41 55 chr6 21320345 21320680 -161094562 + L1MA6 LINE L1 3538 3876 -2424 185 0 40 0 chr6 21320680 21320705 -161094537 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 7343 159 41 55 chr6 21320705 21322208 -161093034 + L1MA6 LINE L1 3876 5317 -983 1967 150 0 0 chr6 21322208 21322495 -161092747 + AluSx SINE Alu 1 287 -25 7343 159 41 55 chr6 21322495 21323460 -161091782 + L1MA6 LINE L1 5317 6294 -6 23 0 0 0 chr6 21323553 21323576 -161091666 + AT_rich Low_complexity Low_complexity 1 23 0 1118 191 94 14 chr6 21324095 21324456 -161090786 + L1ME2 LINE L1 5766 6155 -9 546 325 86 43 chr6 21324471 21324563 -161090679 + L1MEd LINE L1 2121 2208 -3921 2588 68 32 16 chr6 21324563 21324932 -161090310 + THE1C LTR MaLR 1 375 0 546 325 86 43 chr6 21324932 21325233 -161090009 + L1MEd LINE L1 2208 2531 -3598 336 254 54 16 chr6 21325420 21325605 -161089637 + L1MEd LINE L1 2761 2952 -3177 2667 216 83 32 chr6 21325638 21326541 -161088701 + L1ME1 LINE L1 5237 6184 0 637 286 88 54 chr6 21326576 21327080 -161088162 + L1MEd LINE L1 3079 3608 -2521 2152 111 7 0 chr6 21327648 21327937 -161087305 + AluSx SINE Alu 15 305 -7 186 264 207 0 chr6 21328263 21328350 -161086892 - L2 LINE L2 -2489 825 721 343 332 94 53 chr6 21328537 21328856 -161086386 - L2 LINE L2 -2890 424 93 1960 126 0 118 chr6 21328865 21329247 -161085995 + MER1B DNA MER1_type 1 337 0 2155 115 11 0 chr6 21329392 21329679 -161085563 - AluSg SINE Alu -14 296 7 431 261 150 49 chr6 21329679 21329905 -161085337 + L1ME4a LINE L1 5633 5825 -296 1948 191 34 15 chr6 21330245 21330705 -161084537 - MLT1F LTR MaLR 0 542 75 231 260 50 10 chr6 21330696 21330796 -161084446 - LTR16C LTR ERVL -387 104 1 * 22 0 0 0 chr6 21330961 21330983 -161084259 + AT_rich Low_complexity Low_complexity 1 22 0 370 327 13 53 chr6 21331056 21331206 -161084036 - L3 LINE CR1 -8 1569 1426 1062 51 11 34 chr6 21332158 21332333 -161082909 + (TTTC)n Simple_repeat Simple_repeat 3 173 0 6660 79 13 58 chr6 21332334 21333856 -161081386 - SVA Other Other -518 1366 433 5836 61 20 61 chr6 21333919 21334822 -161080420 - SVA Other Other -520 866 1 225 0 0 0 chr6 21334824 21334849 -161080393 + (GGGAGA)n Simple_repeat Simple_repeat 5 29 0 205 137 59 0 chr6 21334861 21334912 -161080330 + CT-rich Low_complexity Low_complexity 3 56 0 632 327 26 43 chr6 21335344 21335647 -161079595 - L2 LINE L2 0 3313 3016 263 158 6 232 chr6 21335788 21335965 -161079277 + L1MC3 LINE L1 6975 7111 -674 305 242 0 0 chr6 21335976 21336042 -161079200 + MLT1F1 LTR MaLR 60 125 -442 2732 152 75 2 chr6 21336042 21336562 -161078680 + L1MD3 LINE L1 7404 7961 -34 658 142 117 25 chr6 21336793 21336913 -161078329 - FLAM_C SINE Alu -12 131 1 201 300 50 0 chr6 21336947 21337007 -161078235 + L2 LINE L2 3251 3313 0 300 366 11 26 chr6 21337036 21337227 -161078015 - L2 LINE L2 -511 2803 2616 395 287 58 43 chr6 21337658 21337846 -161077396 - MLT1J2 LTR MaLR -215 235 45 224 289 0 66 chr6 21337923 21337999 -161077243 + L2 LINE L2 3116 3186 -86 1603 233 8 14 chr6 21338031 21338400 -161076842 + MLT1F LTR MaLR 2 368 -174 2172 104 0 0 chr6 21338522 21338828 -161076414 + AluSg SINE Alu 1 306 0 329 356 37 12 chr6 21339926 21340089 -161075153 - MIR3 SINE MIR -3 205 39 200 259 84 127 chr6 21340274 21340440 -161074802 + MIR3 SINE MIR 16 174 -34 340 295 0 48 chr6 21341440 21341545 -161073697 - L2 LINE L2 0 3313 3214 457 246 161 33 chr6 21341567 21341778 -161073464 + L2 LINE L2 2419 2656 -658 835 267 35 69 chr6 21341798 21342173 -161073069 + L2 LINE L2 2937 3298 -15 2166 97 0 39 chr6 21342963 21343295 -161071947 - AluSg SINE Alu 0 310 1 325 305 92 0 chr6 21343429 21343560 -161071682 + MIR3 SINE MIR 40 182 -26 315 151 70 23 chr6 21345708 21345794 -161069448 - MER58 DNA MER1_type -15 2405 2316 1709 198 3 3 chr6 21345907 21346210 -161069032 + AluJo SINE Alu 9 311 -1 1444 158 133 50 chr6 21346248 21346647 -161068595 + MSTB1 LTR MaLR 1 432 0 1005 320 69 53 chr6 21347187 21347755 -161067487 + L3 LINE CR1 328 904 -673 344 255 21 11 chr6 21348009 21348103 -161067139 + MER5A DNA MER1_type 71 165 -24 284 342 86 8 chr6 21348601 21348718 -161066524 + L2 LINE L2 3188 3313 0 1254 87 0 0 chr6 21349585 21349746 -161065496 + AluSg/x SINE Alu 140 300 -12 250 195 24 24 chr6 21349749 21349831 -161065411 - MER112 DNA MER1_type -143 117 36 1817 147 55 0 chr6 21350078 21350370 -161064872 + AluJo SINE Alu 5 312 0 186 308 39 58 chr6 21353876 21353980 -161061262 - MIR SINE MIR -14 248 147 7735 197 67 27 chr6 21354046 21358913 -161056329 - L1PA16 LINE L1 0 6869 1661 1392 146 0 0 chr6 21358907 21359106 -161056136 - L1PA16 LINE L1 -6646 203 5 * 285 146 0 0 chr6 21359188 21359236 -161056006 + (TATG)n Simple_repeat Simple_repeat 1 48 0 * 286 235 59 12 chr6 21359214 21359299 -161055943 - L1MC4 LINE L1 -1340 6702 6614 2026 154 3 3 chr6 21359755 21360066 -161055176 - AluSx SINE Alu -1 311 1 217 204 0 37 chr6 21360368 21360422 -161054820 + L2 LINE L2 3262 3313 0 681 258 92 0 chr6 21361326 21361489 -161053753 + MIR SINE MIR 12 189 -73 483 60 0 0 chr6 21361517 21361584 -161053658 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 314 215 15 0 chr6 21361584 21361649 -161053593 + MIR SINE MIR 197 262 0 274 245 64 21 chr6 21363549 21363643 -161051599 - MIR3 SINE MIR -10 198 101 203 208 42 0 chr6 21363811 21363859 -161051383 + L2 LINE L2 3222 3271 -1 188 328 0 15 chr6 21366077 21366144 -161049098 - MIR SINE MIR -84 124 59 180 77 0 0 chr6 21366151 21366177 -161049065 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 590 184 0 0 chr6 21366181 21366279 -161048963 + Tigger3(Golem) DNA MER2_type 1 98 -2931 389 191 29 0 chr6 21366277 21366345 -161048897 + MLT1B LTR MaLR 299 368 -22 * 198 330 40 30 chr6 21367128 21367228 -161048014 + L2 LINE L2 3121 3221 -51 1544 241 45 8 chr6 21368314 21368716 -161046526 + L1ME1 LINE L1 5749 6165 -1 2432 99 0 0 chr6 21368918 21369231 -161046011 + AluSq SINE Alu 1 313 0 251 232 81 40 chr6 21369256 21369355 -161045887 - MER103 DNA DNA -9 157 55 232 250 0 19 chr6 21369502 21369554 -161045688 - L3 LINE CR1 -1 1576 1526 191 133 0 0 chr6 21371934 21371964 -161043278 + L2 LINE L2 3277 3306 -7 375 41 0 0 chr6 21372130 21372179 -161043063 + (GA)n Simple_repeat Simple_repeat 2 50 0 2593 66 0 0 chr6 21372405 21372709 -161042533 + AluY SINE Alu 1 304 -7 429 272 64 67 chr6 21372710 21372921 -161042321 - MIR SINE MIR -4 258 45 4356 173 81 26 chr6 21372922 21373585 -161041657 + MER6 DNA MER2_type 1 626 -239 2151 79 22 4 chr6 21373585 21373863 -161041379 + AluY SINE Alu 1 283 -28 198 0 0 0 chr6 21373863 21373885 -161041357 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 4356 173 81 26 chr6 21373885 21374040 -161041202 + MER6 DNA MER2_type 625 865 0 447 258 73 22 chr6 21374085 21374263 -161040979 + MIR SINE MIR 69 255 -7 207 316 18 0 chr6 21374870 21374927 -161040315 + L2 LINE L2 3252 3309 -4 228 179 54 18 chr6 21375039 21375095 -161040147 - HAL1 LINE L1 -999 1508 1451 3695 46 7 0 chr6 21375803 21376235 -161039007 - L1PA8 LINE L1 -1 6171 5737 290 237 75 43 chr6 21377717 21377810 -161037432 + MIR SINE MIR 45 140 -68 2528 69 3 0 chr6 21378219 21378522 -161036720 - AluY SINE Alu -7 304 1 253 246 82 118 chr6 21378832 21378942 -161036300 + MIR SINE MIR 48 153 -55 451 333 13 13 chr6 21378948 21379104 -161036138 - MER5B DNA MER1_type 0 178 23 3045 158 41 16 chr6 21379318 21379825 -161035417 + MLT2B1 LTR ERVL 1 520 0 258 32 0 0 chr6 21379986 21380017 -161035225 + (TG)n Simple_repeat Simple_repeat 1 31 0 613 283 53 35 chr6 21380154 21380189 -161035053 - MIR SINE MIR -21 241 208 1833 146 3 59 chr6 21380189 21380512 -161034730 - AluJb SINE Alu -7 305 1 613 283 53 35 chr6 21380512 21380702 -161034540 - MIR SINE MIR -54 208 12 22 0 0 0 chr6 21381199 21381221 -161034021 + AT_rich Low_complexity Low_complexity 1 22 0 1348 90 0 124 chr6 21381221 21381455 -161033787 - AluSg/x SINE Alu -26 286 82 936 260 72 40 chr6 21382299 21382676 -161032566 + L2 LINE L2 2924 3312 -1 317 226 12 0 chr6 21382684 21382768 -161032474 + GA-rich Low_complexity Low_complexity 1 85 0 9416 220 63 30 chr6 21385375 21386002 -161029240 + L1M3 LINE L1 2533 3138 -3042 1920 151 3 25 chr6 21386002 21386321 -161028921 + AluSx SINE Alu 1 312 0 9416 220 63 30 chr6 21386321 21387782 -161027460 + L1M3 LINE L1 3138 4729 -1451 2375 75 0 16 chr6 21387782 21388089 -161027153 + AluY SINE Alu 1 302 -9 9416 220 63 30 chr6 21388089 21388877 -161026365 + L1M3 LINE L1 4729 5489 -691 2465 39 11 0 chr6 21389043 21389326 -161025916 + AluY SINE Alu 1 286 -25 198 0 0 0 chr6 21389336 21389358 -161025884 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 327 345 53 9 chr6 21389437 21389550 -161025692 + HAL1b LINE L1 66 183 -1165 371 257 106 17 chr6 21389552 21389731 -161025511 + HAL1b LINE L1 1117 1311 -37 25 51 0 0 chr6 21389755 21389794 -161025448 + AT_rich Low_complexity Low_complexity 1 39 0 21 82 0 0 chr6 21389884 21389933 -161025309 + AT_rich Low_complexity Low_complexity 1 49 0 491 198 0 11 chr6 21390872 21390963 -161024279 - Tigger5 DNA MER2_type 0 2323 2234 253 351 52 30 chr6 21392155 21392423 -161022819 + L2 LINE L2 2698 2971 -343 505 288 55 0 chr6 21392951 21393097 -161022145 - LTR67 LTR ERVL -11 546 393 231 282 45 55 chr6 21393246 21393356 -161021886 - LTR67 LTR ERVL -356 201 93 2745 196 133 75 chr6 21394279 21394568 -161020674 - L1MC3 LINE L1 -91 7694 7423 1771 99 0 0 chr6 21394568 21394791 -161020451 + AluSc SINE Alu 1 223 -86 2745 196 133 75 chr6 21394791 21395436 -161019806 - L1MC3 LINE L1 -362 7423 6706 455 275 112 39 chr6 21396109 21396287 -161018955 + MIR SINE MIR 63 253 -9 236 250 17 0 chr6 21396862 21396922 -161018320 + (TG)n Simple_repeat Simple_repeat 2 62 0 892 226 36 9 chr6 21397480 21397701 -161017541 + L1ME3A LINE L1 5939 6165 -5 249 111 156 0 chr6 21397707 21397752 -161017490 + L1MC1 LINE L1 5777 5828 -505 975 169 6 0 chr6 21397766 21397926 -161017316 + L1MC1 LINE L1 5956 6116 -217 2430 154 73 5 chr6 21397928 21398325 -161016917 - MSTB LTR MaLR 0 426 3 1474 159 56 0 chr6 21398326 21398578 -161016664 + L1MC1 LINE L1 6061 6326 -7 32 26 0 0 chr6 21398609 21398648 -161016594 + AT_rich Low_complexity Low_complexity 1 39 0 285 329 41 35 chr6 21399236 21399406 -161015836 - L2 LINE L2 -93 3179 3009 661 152 88 16 chr6 21399462 21399587 -161015655 + FRAM SINE Alu 1 40 0 268 209 90 0 chr6 21400227 21400294 -161014948 - MER91C DNA MER1_type -35 105 33 811 157 0 7 chr6 21400460 21400607 -161014635 + L1MC3 LINE L1 6943 7088 -697 266 216 102 57 chr6 21400614 21400702 -161014540 + MLT1F1 LTR MaLR 33 124 -443 2904 156 11 85 chr6 21400703 21401216 -161014026 + L1MD3 LINE L1 7403 7862 -133 2306 108 0 0 chr6 21401216 21401521 -161013721 + AluSq SINE Alu 1 305 -8 2904 156 11 85 chr6 21401521 21401641 -161013601 + L1MD3 LINE L1 7862 7989 -6 584 294 35 41 chr6 21401736 21401933 -161013309 + MIR SINE MIR 48 243 -19 548 118 24 0 chr6 21402050 21402135 -161013107 - L1MA4 LINE L1 -6 6294 6208 2158 110 3 7 chr6 21402165 21402474 -161012768 + AluSx SINE Alu 1 308 -4 2053 101 34 24 chr6 21403068 21403364 -161011878 - AluSq SINE Alu -13 300 2 1152 188 34 5 chr6 21403666 21403874 -161011368 - MER20 DNA MER1_type -5 214 1 182 245 41 0 chr6 21404686 21404735 -161010507 - L2 LINE L2 -2 3311 3261 276 186 0 0 chr6 21405310 21405369 -161009873 + (TG)n Simple_repeat Simple_repeat 1 59 0 207 108 27 0 chr6 21405876 21405913 -161009329 + (CAA)n Simple_repeat Simple_repeat 3 40 0 406 288 0 61 chr6 21405922 21406054 -161009188 - MIR3 SINE MIR -84 124 1 2171 121 3 0 chr6 21410661 21410966 -161004276 - AluSx SINE Alu -6 306 1 987 181 12 0 chr6 21414533 21414704 -161000538 + MER5B DNA MER1_type 6 178 0 465 286 21 7 chr6 21414716 21414856 -161000386 - MER5B DNA MER1_type -5 173 32 201 39 0 0 chr6 21415094 21415120 -161000122 + (A)n Simple_repeat Simple_repeat 1 26 0 198 239 0 0 chr6 21415810 21415881 -160999361 + (TG)n Simple_repeat Simple_repeat 2 72 0 876 193 35 12 chr6 21417929 21418100 -160997142 - MER45A DNA AcHobo 0 178 4 5317 111 96 126 chr6 21418491 21420070 -160995172 + pTR5 LTR ERV1 741 2438 0 3418 141 32 17 chr6 21420629 21421219 -160994023 + L1MA9 LINE L1 5714 6312 0 267 229 36 136 chr6 21423351 21423424 -160991818 + MIR3 SINE MIR 31 85 -123 1764 193 0 10 chr6 21423424 21423735 -160991507 - AluJo SINE Alu -4 308 1 267 229 36 136 chr6 21423735 21423801 -160991441 + MIR3 SINE MIR 85 156 -52 337 204 69 0 chr6 21424831 21424908 -160990334 - MIR SINE MIR -88 120 35 315 266 85 96 chr6 21425755 21425905 -160989337 + MER5A DNA MER1_type 4 153 -36 2492 70 3 0 chr6 21425905 21426203 -160989039 - AluSp SINE Alu -14 299 1 315 266 85 96 chr6 21426203 21426240 -160989002 + MER5A DNA MER1_type 153 189 0 * 445 270 66 51 chr6 21426240 21426460 -160988782 - MIR3 SINE MIR -46 216 1 934 217 40 54 chr6 21426529 21426805 -160988437 - L1M4 LINE L1 -1019 5127 4856 223 277 40 30 chr6 21427067 21427141 -160988101 + MIR3 SINE MIR 101 178 -30 2253 108 3 10 chr6 21427141 21427455 -160987787 - AluSx SINE Alu 0 312 1 223 277 40 30 chr6 21427455 21427481 -160987761 + MIR3 SINE MIR 178 202 -6 342 318 166 15 chr6 21428790 21429127 -160986115 - L2 LINE L2 -660 2654 2267 22 0 0 0 chr6 21431757 21431779 -160983463 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr6 21433652 21433697 -160981545 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr6 21435246 21435281 -160979961 + GC_rich Low_complexity Low_complexity 1 35 0 195 42 0 0 chr6 21435584 21435608 -160979634 + (CCG)n Simple_repeat Simple_repeat 3 26 0 220 226 0 69 chr6 21436211 21436313 -160978929 + G-rich Low_complexity Low_complexity 2 96 0 386 288 54 95 chr6 21439695 21439917 -160975325 + MIR SINE MIR 20 232 -30 2076 185 82 55 chr6 21439951 21440025 -160975217 - L1M4 LINE L1 -912 5234 5164 2235 106 3 0 chr6 21440025 21440317 -160974925 - AluSq SINE Alu -16 297 5 2076 185 82 55 chr6 21440317 21440465 -160974777 - L1M4 LINE L1 -982 5164 5022 936 218 35 0 chr6 21440465 21440635 -160974607 + MER45A DNA AcHobo 2 177 -1 2076 185 82 55 chr6 21440635 21441017 -160974225 - L1M4 LINE L1 -1124 5022 4612 1793 179 38 52 chr6 21441039 21441148 -160974094 + L1ME LINE L1 5254 5363 -803 1746 136 0 101 chr6 21441148 21441486 -160973756 + AluJb SINE Alu 1 304 -8 1793 179 38 52 chr6 21441486 21441801 -160973441 + L1ME LINE L1 5363 5672 -494 209 296 178 33 chr6 21444292 21444444 -160970798 - L2 LINE L2 -181 3091 2918 2640 48 0 3 chr6 21444509 21444821 -160970421 - AluY SINE Alu 0 311 1 206 160 60 0 chr6 21445039 21445089 -160970153 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 498 279 49 46 chr6 21445095 21445464 -160969778 - L1ME4a LINE L1 -33 6088 5719 1301 198 0 0 chr6 21448390 21448607 -160966635 + AluJb SINE Alu 1 217 -95 387 0 0 0 chr6 21449206 21449249 -160965993 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 211 341 45 38 chr6 21449267 21449399 -160965843 + MIR3 SINE MIR 33 165 -43 2321 102 0 0 chr6 21449402 21449697 -160965545 + AluSx SINE Alu 1 295 -17 1692 251 136 36 chr6 21449899 21450567 -160964675 - L2 LINE L2 -623 2691 1957 2268 118 0 0 chr6 21451571 21451877 -160963365 - AluSx SINE Alu -6 306 1 22 35 0 0 chr6 21452128 21452157 -160963085 + AT_rich Low_complexity Low_complexity 1 29 0 1191 204 27 4 chr6 21452645 21452905 -160962337 - L1MD3 LINE L1 0 7995 7730 219 316 0 25 chr6 21453415 21453494 -160961748 - L2 LINE L2 0 3272 3196 2345 91 0 3 chr6 21453833 21454129 -160961113 + AluSq SINE Alu 1 295 -18 394 306 50 88 chr6 21454226 21454543 -160960699 + L2 LINE L2 2962 3266 -6 338 344 8 0 chr6 21455231 21455362 -160959880 - Charlie8 DNA MER1_type -2157 260 129 23 0 0 0 chr6 21455493 21455516 -160959726 + AT_rich Low_complexity Low_complexity 1 23 0 2309 99 3 3 chr6 21456016 21456319 -160958923 + AluSx SINE Alu 1 303 -9 288 304 36 7 chr6 21456324 21456462 -160958780 + L1M4b LINE L1 1388 1529 -5330 345 303 8 30 chr6 21456902 21457034 -160958208 + MIR SINE MIR 25 153 -109 2374 78 3 0 chr6 21457081 21457374 -160957868 + AluY SINE Alu 1 294 -17 2205 111 0 10 chr6 21458405 21458712 -160956530 - AluSg SINE Alu -5 305 2 1796 166 32 9 chr6 21459121 21459465 -160955777 - L1MC3 LINE L1 0 7785 7434 301 329 117 41 chr6 21460178 21460432 -160954810 - L2 LINE L2 -225 3047 2780 312 256 64 26 chr6 21462076 21462232 -160953010 + L1ME4a LINE L1 5878 6039 -82 2135 97 0 10 chr6 21462289 21462598 -160952644 + AluSg1 SINE Alu 1 306 0 232 263 35 0 chr6 21462938 21462995 -160952247 + MIR SINE MIR 204 262 0 645 318 44 21 chr6 21463016 21463403 -160951839 + L1ME LINE L1 5282 5677 -444 584 254 127 47 chr6 21463401 21463810 -160951432 + L1MC4a LINE L1 5605 6046 -1762 * 22 56 0 0 chr6 21463881 21463917 -160951325 + AT_rich Low_complexity Low_complexity 1 36 0 297 311 47 0 chr6 21464018 21464124 -160951118 + L2 LINE L2 3203 3313 0 643 283 30 0 chr6 21464658 21464824 -160950418 - MER5B DNA MER1_type -1 177 7 358 274 14 0 chr6 21465539 21465612 -160949630 + MER5A DNA MER1_type 10 83 -106 1259 127 18 45 chr6 21465685 21465951 -160949291 - AluSg SINE Alu 0 356 97 3884 125 70 64 chr6 21465951 21467332 -160947910 + pTR5 LTR ERV1 743 2437 -1 347 101 241 0 chr6 21467332 21467411 -160947831 - AluSg SINE Alu -198 102 5 203 213 85 0 chr6 21467453 21467500 -160947742 + L2 LINE L2 3219 3269 -3 471 298 0 24 chr6 21470576 21470700 -160944542 - MER5B DNA MER1_type 0 178 58 3246 213 99 49 chr6 21470701 21471763 -160943479 - L1MD2 LINE L1 0 6753 5746 1911 163 0 20 chr6 21471763 21472107 -160943135 - MER1B DNA MER1_type 0 337 1 3246 213 99 49 chr6 21472107 21472174 -160943068 - L1MD2 LINE L1 -1007 5746 5684 2383 79 3 10 chr6 21472174 21472478 -160942764 + AluSp SINE Alu 10 311 -2 3246 213 99 49 chr6 21472478 21472530 -160942712 - L1MD2 LINE L1 -1069 5684 5526 934 168 56 0 chr6 21472530 21472709 -160942533 - L1PA15 LINE L1 -1 6164 5976 4863 209 67 54 chr6 21472709 21473008 -160942234 - L1MD2 LINE L1 -1810 4730 4436 2096 123 30 0 chr6 21473008 21473309 -160941933 - AluSx SINE Alu -2 310 1 4863 209 67 54 chr6 21473309 21475728 -160939514 - L1MD2 LINE L1 -2104 4436 1951 1316 192 80 4 chr6 21475728 21476004 -160939238 - AluJo SINE Alu -11 301 5 4863 209 67 54 chr6 21476004 21476788 -160938454 - L1MD2 LINE L1 -4589 1951 1179 2757 249 70 9 chr6 21476776 21477575 -160937667 - L1MD2 LINE L1 -5585 955 108 * 182 294 71 47 chr6 21477960 21478045 -160937197 + MIR SINE MIR 173 259 -3 330 329 234 13 chr6 21478416 21478814 -160936428 + L2 LINE L2 2045 2530 -784 460 292 142 34 chr6 21479150 21479503 -160935739 - MLT1I LTR MaLR 0 409 19 208 91 45 23 chr6 21479568 21479612 -160935630 + CT-rich Low_complexity Low_complexity 3 47 0 2141 116 20 3 chr6 21480128 21480429 -160934813 + AluSq SINE Alu 1 306 -7 2009 119 57 3 chr6 21480816 21481152 -160934090 + MER46B DNA MER2_type 8 236 0 298 260 41 112 chr6 21482714 21482883 -160932359 + MIR SINE MIR 81 237 -25 310 343 9 0 chr6 21482946 21483054 -160932188 - MIR SINE MIR -29 233 125 216 0 0 0 chr6 21484248 21484272 -160930970 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr6 21484330 21484352 -160930890 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 21484388 21484416 -160930826 + AT_rich Low_complexity Low_complexity 1 28 0 204 222 0 0 chr6 21485060 21485105 -160930137 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 246 349 148 0 chr6 21485142 21485311 -160929931 - MER117 DNA MER1_type -1 196 3 2474 71 3 0 chr6 21485733 21486029 -160929213 + AluSp SINE Alu 1 297 -16 255 31 0 0 chr6 21486030 21486062 -160929180 + (TA)n Simple_repeat Simple_repeat 1 32 0 299 317 10 0 chr6 21486805 21486906 -160928336 + (TA)n Simple_repeat Simple_repeat 2 103 0 297 258 0 0 chr6 21487010 21487103 -160928139 + (CATA)n Simple_repeat Simple_repeat 2 94 0 1563 164 101 9 chr6 21487104 21487422 -160927820 - MER7A DNA MER2_type -1 345 1 282 221 250 0 chr6 21487435 21487539 -160927703 - L1ME3A LINE L1 -7 6163 6034 524 231 75 42 chr6 21487539 21487751 -160927491 - L1M4 LINE L1 -1116 5030 4812 368 127 0 0 chr6 21487802 21487865 -160927377 - L1MA9 LINE L1 -38 6274 6212 1652 265 38 34 chr6 21487866 21488640 -160926602 - L1M4 LINE L1 -960 5186 4410 625 244 45 51 chr6 21488672 21488860 -160926382 + MLT2C1 LTR ERVL 13 187 -227 2338 107 0 0 chr6 21488860 21489170 -160926072 - AluSg SINE Alu 0 310 1 625 244 45 51 chr6 21489170 21489363 -160925879 + MLT2C1 LTR ERVL 187 380 -34 261 250 228 0 chr6 21490720 21490812 -160924430 - MIR SINE MIR -62 200 88 2593 175 32 20 chr6 21491149 21491652 -160923590 + MLT2B2 LTR ERVL 1 509 -6 2334 95 0 3 chr6 21494184 21494488 -160920754 + AluSx SINE Alu 1 303 -9 2443 69 0 13 chr6 21494689 21494992 -160920250 + AluY SINE Alu 1 299 -12 792 20 0 10 chr6 21495355 21495455 -160919787 + L1PB1 LINE L1 6053 6151 0 21 36 0 0 chr6 21495471 21495499 -160919743 + AT_rich Low_complexity Low_complexity 1 28 0 1706 208 83 55 chr6 21495673 21495714 -160919528 - L1ME1 LINE L1 -5 6161 6123 2401 94 0 7 chr6 21495714 21496022 -160919220 + AluSx SINE Alu 1 306 -6 1588 154 41 31 chr6 21496026 21496319 -160918923 - AluJo SINE Alu -16 296 1 1706 208 83 55 chr6 21496319 21496887 -160918355 - L1ME1 LINE L1 -45 6121 5530 886 150 0 0 chr6 21496889 21497016 -160918226 + FRAM SINE Alu 47 173 -3 1494 219 50 71 chr6 21497023 21497285 -160917957 - L1ME1 LINE L1 -881 5265 4999 2161 118 0 0 chr6 21497285 21497581 -160917661 - AluSx SINE Alu -16 296 1 1494 219 50 71 chr6 21497581 21497752 -160917490 - L1ME1 LINE L1 -1147 4999 4826 1635 150 93 31 chr6 21497752 21498105 -160917137 + THE1C LTR MaLR 1 375 0 1494 219 50 71 chr6 21498105 21498335 -160916907 - L1ME1 LINE L1 -1320 4826 4615 1449 12 0 0 chr6 21498817 21498982 -160916260 - L1PA3 LINE L1 0 6155 5991 2695 19 0 0 chr6 21498989 21499312 -160915930 + L1PA3 LINE L1 5666 5988 -167 2139 132 3 0 chr6 21499483 21499778 -160915464 - AluSx SINE Alu -16 296 1 2135 114 7 3 chr6 21500739 21501061 -160914181 - AluSq SINE Alu 0 323 1 627 180 40 47 chr6 21501106 21501256 -160913986 - Tigger1 DNA MER2_type -1 2417 2269 4073 127 25 22 chr6 21501325 21501883 -160913359 - Tigger1 DNA MER2_type -110 2308 1746 2015 77 59 21 chr6 21501883 21502170 -160913072 - AluY SINE Alu -13 298 1 4073 127 25 22 chr6 21502170 21502333 -160912909 - Tigger1 DNA MER2_type -672 1746 1585 1160 163 0 20 chr6 21502336 21502532 -160912710 - AluJ SINE Alu -1 311 120 228 35 0 0 chr6 21502532 21502561 -160912681 + (T)n Simple_repeat Simple_repeat 1 29 0 41241 30 21 1 chr6 21502564 21508590 -160906652 - L1HS LINE L1 0 6155 7 763 126 15 44 chr6 21508596 21508731 -160906511 - AluJ SINE Alu -171 131 1 8684 110 15 82 chr6 21508736 21509061 -160906181 - Tigger1 DNA MER2_type -835 1583 1238 2320 67 0 11 chr6 21509061 21509346 -160905896 + AluY SINE Alu 29 310 -1 8684 110 15 82 chr6 21509346 21510673 -160904569 - Tigger1 DNA MER2_type -1180 1238 45 988 189 5 11 chr6 21510659 21510850 -160904392 + AluJo SINE Alu 122 311 -1 * 947 164 16 22 chr6 21512552 21512735 -160902507 - AluSg/x SINE Alu -1 309 128 22 35 0 0 chr6 21512828 21512857 -160902385 + AT_rich Low_complexity Low_complexity 1 29 0 212 184 0 0 chr6 21512970 21513008 -160902234 + MIR SINE MIR 214 251 -11 300 304 49 10 chr6 21514192 21514294 -160900948 + MIR SINE MIR 69 174 -88 204 271 153 61 chr6 21514382 21514644 -160900598 - L2 LINE L2 -61 3252 2967 459 270 50 55 chr6 21515180 21515380 -160899862 + MIR SINE MIR 30 228 -34 2037 133 0 7 chr6 21515634 21515970 -160899272 + AluSx SINE Alu 1 334 0 2186 113 3 3 chr6 21516424 21516733 -160898509 - AluSx SINE Alu -3 309 1 326 301 36 0 chr6 21518546 21518629 -160896613 - MIR SINE MIR -115 147 62 206 197 40 66 chr6 21520203 21520279 -160894963 - L2 LINE L2 -78 3235 3162 237 310 106 42 chr6 21520457 21520741 -160894501 - L2 LINE L2 -463 2851 2550 381 304 87 0 chr6 21521009 21521124 -160894118 + L2 LINE L2 3182 3306 -7 408 302 119 38 chr6 21521249 21521484 -160893758 - MIR SINE MIR 0 262 9 246 237 17 0 chr6 21522024 21522083 -160893159 + L2 LINE L2 3253 3312 -1 180 0 0 0 chr6 21522577 21522597 -160892645 + (T)n Simple_repeat Simple_repeat 1 20 0 293 324 114 11 chr6 21523591 21523767 -160891475 - L3b LINE CR1 -261 1322 1129 1741 171 7 32 chr6 21525696 21526006 -160889236 + AluJo SINE Alu 5 306 -6 316 354 22 58 chr6 21526348 21526574 -160888668 - MIR SINE MIR -19 243 26 2135 120 0 10 chr6 21526654 21526953 -160888289 + AluSx SINE Alu 1 296 -16 11809 42 8 0 chr6 21526959 21529185 -160886057 - L1PA6 LINE L1 0 6154 3917 2258 100 10 7 chr6 21529458 21529757 -160885485 - AluSg SINE Alu -10 300 1 1031 147 13 0 chr6 21529798 21529954 -160885288 + AluSg/x SINE Alu 133 290 -20 4499 194 27 20 chr6 21530093 21530686 -160884556 + MER45B DNA AcHobo 37 641 -940 1970 158 6 3 chr6 21530686 21530997 -160884245 + AluSx SINE Alu 1 312 0 4499 194 27 20 chr6 21530997 21531400 -160883842 + MER45B DNA AcHobo 641 1040 0 735 268 128 38 chr6 21531840 21532317 -160882925 + HAL1 LINE L1 1984 2503 -4 278 294 220 67 chr6 21532340 21532758 -160882484 - LTR67 LTR ERVL -74 483 2 246 62 0 0 chr6 21532882 21532914 -160882328 + (TC)n Simple_repeat Simple_repeat 1 32 0 291 28 0 0 chr6 21533089 21533125 -160882117 + (CAAG)n Simple_repeat Simple_repeat 3 38 0 7161 40 10 1 chr6 21533987 21534963 -160880279 + L1PA7 LINE L1 5165 6148 -6 259 292 15 0 chr6 21535616 21535681 -160879561 - L3 LINE CR1 -248 1329 1264 352 119 0 0 chr6 21535688 21535747 -160879495 - Alu SINE Alu 0 302 244 185 243 121 79 chr6 21535757 21535809 -160879433 - L3 LINE CR1 -321 1256 1208 2295 97 0 7 chr6 21535809 21536117 -160879125 + AluSq SINE Alu 1 306 -7 185 243 121 79 chr6 21536117 21536204 -160879038 - L3 LINE CR1 -369 1208 1111 * 208 398 70 8 chr6 21536187 21536315 -160878927 - L2 LINE L2 0 3272 3137 302 332 153 0 chr6 21536569 21536759 -160878483 - L1M4 LINE L1 -2972 3174 2956 1100 151 23 41 chr6 21537688 21537906 -160877336 + MER20 DNA MER1_type 6 219 0 371 247 0 0 chr6 21538059 21538148 -160877094 - Charlie8 DNA MER1_type -2245 172 84 198 182 0 76 chr6 21538531 21538597 -160876645 + MIR SINE MIR 154 214 -48 359 292 118 12 chr6 21539692 21539853 -160875389 + MER5A DNA MER1_type 9 186 -3 525 328 51 2 chr6 21539876 21540290 -160874952 - MLT1L LTR MaLR -79 536 35 2323 86 0 3 chr6 21540503 21540805 -160874437 - AluSq SINE Alu -12 301 1 206 355 40 0 chr6 21540847 21540923 -160874319 - MIR3 SINE MIR -16 192 114 4224 148 24 14 chr6 21541485 21542203 -160873039 - MER44D DNA MER2_type 0 605 9 262 306 95 48 chr6 21542247 21542394 -160872848 + L3 LINE CR1 1003 1156 -421 328 270 178 26 chr6 21542416 21542568 -160872674 - MIR SINE MIR -53 209 35 423 257 74 40 chr6 21542595 21542743 -160872499 - MIR SINE MIR -18 244 92 211 152 0 0 chr6 21542807 21542840 -160872402 + L3 LINE CR1 1294 1326 -251 21 0 0 0 chr6 21543333 21543354 -160871888 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 21543890 21543911 -160871331 + AT_rich Low_complexity Low_complexity 1 21 0 2070 98 7 20 chr6 21545789 21546094 -160869148 - AluSq SINE Alu -12 301 1 195 317 30 40 chr6 21546536 21546637 -160868605 + L2 LINE L2 2839 2938 -375 517 232 132 96 chr6 21547083 21547355 -160867887 - L2 LINE L2 -1 3312 3031 219 88 0 0 chr6 21547356 21547390 -160867852 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 4111 113 14 7 chr6 21547412 21548032 -160867210 - L1PB1 LINE L1 -6 6145 5521 259 292 29 74 chr6 21548127 21548370 -160866872 - L2 LINE L2 -1262 2052 1821 835 176 0 0 chr6 21548410 21548552 -160866690 + FLAM_C SINE Alu 1 142 -1 2539 61 0 3 chr6 21548568 21548878 -160866364 + AluY SINE Alu 1 309 -2 1069 178 18 49 chr6 21548972 21549197 -160866045 - MER20 DNA MER1_type -1 218 1 225 371 64 21 chr6 21550105 21550245 -160864997 - MIR SINE MIR -6 256 111 375 60 0 0 chr6 21551634 21551684 -160863558 + (TG)n Simple_repeat Simple_repeat 1 50 0 358 215 21 55 chr6 21554686 21554812 -160860430 - MIR SINE MIR -70 138 23 2635 42 0 6 chr6 21555521 21555833 -160859409 - AluY SINE Alu -1 310 1 230 225 38 12 chr6 21556089 21556169 -160859073 - L1ME4a LINE L1 -49 6072 5991 244 210 25 37 chr6 21556231 21556312 -160858930 + MER116 DNA Mariner 1 80 0 1715 131 64 14 chr6 21556510 21556819 -160858423 + AluSq SINE Alu 7 313 0 234 0 0 0 chr6 21558320 21558346 -160856896 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 1541 147 59 82 chr6 21559950 21560139 -160855103 - AluJb SINE Alu -13 299 118 297 0 0 0 chr6 21560139 21560172 -160855070 + (TA)n Simple_repeat Simple_repeat 1 33 0 1541 147 59 82 chr6 21560172 21560288 -160854954 - AluJb SINE Alu -194 118 1 3633 122 2 28 chr6 21560589 21561129 -160854113 - MER1A DNA MER1_type 0 527 2 188 33 0 33 chr6 21561181 21561211 -160854031 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 267 31 0 0 chr6 21561433 21561465 -160853777 + (GA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr6 21562131 21562159 -160853083 + AT_rich Low_complexity Low_complexity 1 28 0 2222 107 3 16 chr6 21563255 21563565 -160851677 - AluSg SINE Alu -4 306 1 21 0 0 0 chr6 21563739 21563760 -160851482 + AT_rich Low_complexity Low_complexity 1 21 0 2417 86 3 0 chr6 21564496 21564799 -160850443 - AluSp SINE Alu -9 304 1 248 248 28 131 chr6 21564919 21565064 -160850178 + MIR SINE MIR 61 190 -72 468 275 84 24 chr6 21565742 21565909 -160849333 + MIR SINE MIR 30 206 -56 207 216 0 0 chr6 21565981 21566018 -160849224 + L2 LINE L2 3219 3255 -17 1605 55 0 0 chr6 21566040 21566242 -160849000 - L1PA5 LINE L1 -2 6152 5951 1794 146 57 0 chr6 21566242 21566522 -160848720 + AluSx SINE Alu 6 301 -11 1751 129 18 11 chr6 21567885 21568213 -160847029 - AluSx SINE Alu 0 330 1 2418 75 0 3 chr6 21568826 21569131 -160846111 - AluSq SINE Alu -9 304 1 593 304 43 32 chr6 21569335 21569588 -160845654 - MIR SINE MIR -1 261 6 2435 76 0 0 chr6 21569785 21570087 -160845155 - AluY SINE Alu -9 302 1 5906 20 6 0 chr6 21570741 21571427 -160843815 - L1PA2 LINE L1 -2 6153 5464 35 24 0 0 chr6 21571975 21572017 -160843225 + AT_rich Low_complexity Low_complexity 1 42 0 393 237 26 13 chr6 21572030 21572182 -160843060 + (TA)n Simple_repeat Simple_repeat 1 154 0 264 273 80 87 chr6 21573448 21573598 -160841644 - L2 LINE L2 -42 3271 3123 22 70 0 0 chr6 21573995 21574038 -160841204 + AT_rich Low_complexity Low_complexity 1 43 0 360 356 164 8 chr6 21574073 21574475 -160840767 - L2 LINE L2 -816 2498 2034 1024 83 0 8 chr6 21574484 21574616 -160840626 + AluSc SINE Alu 1 131 -178 2424 84 7 0 chr6 21574619 21574928 -160840314 + AluSx SINE Alu 1 311 -1 5364 130 32 29 chr6 21575980 21576035 -160839207 + L1MA5 LINE L1 5319 5372 -928 2134 125 30 0 chr6 21576035 21576338 -160838904 + AluSx SINE Alu 1 312 0 5364 130 32 29 chr6 21576338 21577259 -160837983 + L1MA5 LINE L1 5372 6298 -2 1891 112 0 0 chr6 21577273 21577514 -160837728 + AluSx SINE Alu 10 250 -62 284 319 141 15 chr6 21577665 21577800 -160837442 + MIR3 SINE MIR 52 203 -5 882 266 103 88 chr6 21577835 21578261 -160836981 + L2 LINE L2 1636 2075 -1239 791 169 123 60 chr6 21578261 21578563 -160836679 - MER33 DNA MER1_type 0 324 4 882 266 103 88 chr6 21578563 21578718 -160836524 + L2 LINE L2 2075 2226 -1088 713 258 39 82 chr6 21578720 21579247 -160835995 - L2 LINE L2 -2 3311 2538 1041 165 5 24 chr6 21579302 21579508 -160835734 - MER3 DNA MER1_type -6 203 2 679 297 39 66 chr6 21579601 21579931 -160835311 + L2 LINE L2 2316 2636 -678 369 208 195 88 chr6 21579931 21580090 -160835152 - MER5B DNA MER1_type -1 177 2 679 297 39 66 chr6 21580090 21580140 -160835102 + L2 LINE L2 2636 2686 -628 445 264 147 35 chr6 21580281 21580478 -160834764 - MIR SINE MIR -13 249 31 208 0 62 0 chr6 21581420 21581452 -160833790 + (CA)n Simple_repeat Simple_repeat 2 35 0 192 152 0 0 chr6 21582572 21582605 -160832637 + CT-rich Low_complexity Low_complexity 1 33 0 3739 124 24 24 chr6 21582686 21583321 -160831921 - MER41B LTR ERV1 0 635 1 252 217 22 0 chr6 21583692 21583738 -160831504 - MER5A DNA MER1_type 0 189 143 2512 77 0 6 chr6 21584259 21584572 -160830670 - AluY SINE Alu 0 311 1 2346 84 0 3 chr6 21584935 21585271 -160829971 + AluSp SINE Alu 6 340 0 422 206 2 11 chr6 21586604 21586735 -160828507 - L1ME LINE L1 -387 5758 5629 554 235 51 11 chr6 21586874 21587137 -160828105 - L1ME LINE L1 -537 5567 5275 649 296 90 49 chr6 21587162 21588222 -160827020 - L1ME LINE L1 -900 5229 4127 246 222 0 19 chr6 21588223 21588277 -160826965 + CT-rich Low_complexity Low_complexity 2 54 0 455 264 95 90 chr6 21588302 21588420 -160826822 - L1ME LINE L1 -1964 4165 4049 2353 73 7 0 chr6 21588420 21588720 -160826522 + AluSq SINE Alu 1 302 -11 455 264 95 90 chr6 21588720 21588823 -160826419 - L1ME LINE L1 -2080 4049 3948 1595 97 14 5 chr6 21588823 21589040 -160826202 - AluSg/x SINE Alu -19 293 75 455 264 95 90 chr6 21589040 21589185 -160826057 - L1ME LINE L1 -2181 3948 3796 1141 103 31 16 chr6 21589228 21589422 -160825820 - L1MB2 LINE L1 -16 6155 5959 3867 133 23 19 chr6 21589427 21590117 -160825125 + L1MA8 LINE L1 5587 6279 -12 335 236 113 55 chr6 21590596 21590906 -160824336 - L1ME LINE L1 -2665 3464 3137 22 80 0 0 chr6 21591112 21591162 -160824080 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr6 21591203 21591239 -160824003 + AT_rich Low_complexity Low_complexity 1 36 0 225 154 0 0 chr6 21591272 21591311 -160823931 + T-rich Low_complexity Low_complexity 1 39 0 2188 141 0 0 chr6 21591313 21591625 -160823617 - AluSx SINE Alu 0 312 1 257 209 52 26 chr6 21591771 21591886 -160823356 - L1ME LINE L1 -3690 2439 2322 261 240 25 16 chr6 21591939 21592060 -160823182 + (TA)n Simple_repeat Simple_repeat 2 123 0 575 162 0 38 chr6 21592338 21592443 -160822799 - AluJb SINE Alu -78 234 134 738 291 94 46 chr6 21592641 21593685 -160821557 - L1MEd LINE L1 -4746 1564 420 309 109 0 0 chr6 21593936 21593982 -160821260 + (CA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr6 21593990 21594015 -160821227 + AT_rich Low_complexity Low_complexity 1 25 0 2489 74 0 0 chr6 21596048 21596359 -160818883 - AluY SINE Alu 0 311 1 1543 135 6 82 chr6 21596406 21596663 -160818579 + LTR57 LTR ERVL 2 228 -183 2144 128 3 0 chr6 21596663 21596967 -160818275 - AluSx SINE Alu -7 305 1 1543 135 6 82 chr6 21596967 21597050 -160818192 + LTR57 LTR ERVL 228 316 -95 2305 81 13 3 chr6 21597093 21597401 -160817841 - AluY SINE Alu 0 311 1 696 283 37 66 chr6 21598676 21598866 -160816376 + L1ME3A LINE L1 5495 5689 -481 2136 142 0 0 chr6 21598866 21599176 -160816066 - AluSx SINE Alu -2 310 1 696 283 37 66 chr6 21599176 21599395 -160815847 + L1ME3A LINE L1 5689 5892 -278 2355 61 0 7 chr6 21599481 21599778 -160815464 - AluY SINE Alu -15 296 2 1725 152 45 0 chr6 21600956 21601246 -160813996 - AluSx SINE Alu -9 303 1 30 0 0 0 chr6 21601395 21601425 -160813817 + AT_rich Low_complexity Low_complexity 1 30 0 2141 135 3 6 chr6 21601694 21602006 -160813236 - AluSx SINE Alu -1 311 1 23 0 0 0 chr6 21602281 21602304 -160812938 + AT_rich Low_complexity Low_complexity 1 23 0 216 162 0 0 chr6 21603533 21603570 -160811672 + (CA)n Simple_repeat Simple_repeat 2 38 0 217 119 0 48 chr6 21605071 21605113 -160810129 + (CAT)n Simple_repeat Simple_repeat 3 42 0 2096 96 4 4 chr6 21605682 21605990 -160809252 - AluSg SINE Alu 0 308 1 258 316 0 0 chr6 21606305 21606384 -160808858 - MIR SINE MIR -1 261 183 530 153 68 59 chr6 21606740 21606858 -160808384 + FLAM_A SINE Alu 1 119 -14 438 65 0 0 chr6 21606858 21606920 -160808322 + (TA)n Simple_repeat Simple_repeat 2 63 0 30 0 0 0 chr6 21608687 21608717 -160806525 + AT_rich Low_complexity Low_complexity 1 30 0 220 329 146 40 chr6 21608884 21609158 -160806084 - L2 LINE L2 -158 3114 2812 248 242 0 15 chr6 21610826 21610892 -160804350 + MER34 LTR ERV1 49 113 -429 * 1131 221 46 47 chr6 21610884 21611322 -160803920 + MER39 LTR ERV1 221 707 0 201 94 0 0 chr6 21611441 21611473 -160803769 + (T)n Simple_repeat Simple_repeat 1 32 0 2121 135 3 0 chr6 21611581 21611870 -160803372 - AluSx SINE Alu -22 290 1 275 290 32 54 chr6 21612160 21612253 -160802989 - MIR SINE MIR -86 176 86 28 0 0 0 chr6 21612288 21612316 -160802926 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr6 21613495 21613534 -160801708 + AT_rich Low_complexity Low_complexity 1 39 0 480 358 17 0 chr6 21613785 21613958 -160801284 + MIR3 SINE MIR 5 180 -28 379 295 89 106 chr6 21614064 21614198 -160801044 + L1MEd LINE L1 3 138 -5981 849 124 73 28 chr6 21614198 21614375 -160800867 - MER53 DNA DNA -2 187 3 379 295 89 106 chr6 21614375 21614721 -160800521 + L1MEd LINE L1 138 475 -5644 306 260 40 30 chr6 21614732 21614832 -160800410 + L1MEd LINE L1 520 620 -5499 1233 161 120 20 chr6 21614848 21615147 -160800095 - MER39 LTR ERV1 0 707 379 287 196 213 53 chr6 21615154 21615311 -160799931 - MER34 LTR ERV1 -410 132 1 377 314 63 61 chr6 21615324 21615687 -160799555 + L1MEd LINE L1 703 1066 -5053 233 281 43 29 chr6 21615706 21615916 -160799326 + L1MEd LINE L1 1183 1395 -4915 351 236 24 16 chr6 21615927 21616050 -160799192 + (TA)n Simple_repeat Simple_repeat 2 125 0 321 259 115 111 chr6 21616061 21616599 -160798643 + L1MEd LINE L1 2280 2823 -3306 1862 158 28 0 chr6 21616599 21616890 -160798352 + AluSx SINE Alu 1 299 -13 321 259 115 111 chr6 21616890 21617018 -160798224 + L1MEd LINE L1 2823 2949 -3180 415 254 112 94 chr6 21617178 21617552 -160797690 + L1MEd LINE L1 3212 3592 -2537 1450 297 62 41 chr6 21617586 21617928 -160797314 + L1MEd LINE L1 3717 4050 -2103 2446 55 3 0 chr6 21617928 21618220 -160797022 - AluY SINE Alu -14 297 5 1450 297 62 41 chr6 21618220 21619219 -160796023 + L1MEd LINE L1 4050 5123 -1030 2086 79 14 7 chr6 21619219 21619517 -160795725 + AluY SINE Alu 1 300 0 1450 297 62 41 chr6 21619517 21620309 -160794933 + L1MEd LINE L1 5123 5897 -256 235 333 117 17 chr6 21620944 21621064 -160794178 + MIR SINE MIR 1 132 -130 24 53 0 0 chr6 21621455 21621493 -160793749 + AT_rich Low_complexity Low_complexity 1 38 0 2300 98 0 10 chr6 21621810 21622115 -160793127 + AluSg SINE Alu 1 302 -8 1945 251 57 41 chr6 21622693 21623209 -160792033 - HsTC2a DNA Tc2 -1183 717 186 2661 52 0 0 chr6 21623209 21623518 -160791724 + AluY SINE Alu 1 309 -2 1945 251 57 41 chr6 21623518 21623707 -160791535 - HsTC2a DNA Tc2 -1714 186 1 2251 102 3 0 chr6 21624308 21624601 -160790641 - AluSq SINE Alu -19 294 1 251 204 126 48 chr6 21624644 21624747 -160790495 + MIR SINE MIR 151 261 -1 213 305 148 8 chr6 21625173 21625301 -160789941 - MIR3 SINE MIR -62 146 1 2456 68 0 34 chr6 21625333 21625654 -160789588 - AluY SINE Alu -1 310 1 2186 129 132 5 chr6 21626010 21626390 -160788852 + MSTA LTR MaLR 1 428 0 472 280 187 16 chr6 21626416 21626909 -160788333 - L1ME4a LINE L1 -269 5852 5276 21 89 0 0 chr6 21627638 21627694 -160787548 + AT_rich Low_complexity Low_complexity 1 56 0 631 345 29 5 chr6 21627851 21628057 -160787185 + LTR16B LTR ERVL 15 225 -239 485 265 30 24 chr6 21628098 21628264 -160786978 + LTR16B LTR ERVL 294 460 -4 21 0 0 0 chr6 21629965 21629986 -160785256 + AT_rich Low_complexity Low_complexity 1 21 0 2236 121 3 0 chr6 21630183 21630489 -160784753 - AluSp SINE Alu -6 307 1 660 115 39 19 chr6 21630952 21631056 -160784186 + U6 snRNA snRNA 1 106 -1 266 275 122 38 chr6 21631233 21631364 -160783878 - MIR SINE MIR -36 226 85 186 313 94 16 chr6 21631490 21631554 -160783688 + MIR3 SINE MIR 15 83 -125 23 33 0 0 chr6 21631740 21631770 -160783472 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 21631817 21631853 -160783389 + AT_rich Low_complexity Low_complexity 1 36 0 261 363 180 11 chr6 21631946 21632224 -160783018 + L3 LINE CR1 60 384 -1193 205 224 45 30 chr6 21632368 21632435 -160782807 - MER5A DNA MER1_type -85 104 37 433 279 211 0 chr6 21632657 21632861 -160782381 + MIR SINE MIR 16 262 0 550 352 86 40 chr6 21632916 21633725 -160781517 - L2 LINE L2 -84 3188 2329 243 0 0 0 chr6 21633725 21633752 -160781490 + (TG)n Simple_repeat Simple_repeat 2 28 0 550 352 86 40 chr6 21633752 21633857 -160781385 - L2 LINE L2 -943 2329 2230 253 333 61 23 chr6 21633876 21634008 -160781234 - MLT1J LTR MaLR -2 509 373 433 264 149 11 chr6 21634110 21634284 -160780958 - MLT1J LTR MaLR -269 242 45 2931 53 35 0 chr6 21634870 21635246 -160779996 + L1PA7 LINE L1 5749 6137 -17 1050 151 0 6 chr6 21636374 21636553 -160778689 + CT-rich Low_complexity Low_complexity 3 180 0 258 282 45 27 chr6 21636690 21636800 -160778442 - L1M4 LINE L1 -1175 4971 4860 1595 223 113 34 chr6 21636848 21637693 -160777549 - L1MC/D LINE L1 -751 5378 4679 695 224 6 6 chr6 21637703 21637877 -160777365 - L1MC/D LINE L1 -1534 4595 4422 643 307 74 19 chr6 21638524 21639144 -160776098 - L1MEd LINE L1 -4682 1628 946 648 154 7 47 chr6 21639155 21639304 -160775938 - L1MB8 LINE L1 -303 5875 5733 459 260 110 122 chr6 21639319 21639756 -160775486 - L1MEd LINE L1 -5168 951 510 2045 133 7 7 chr6 21639756 21640058 -160775184 - AluSx SINE Alu -10 302 1 459 260 110 122 chr6 21640058 21640544 -160774698 - L1MEd LINE L1 -5609 510 39 12697 199 40 36 chr6 21641047 21641150 -160774092 - L1MA4A LINE L1 -23 6982 6881 2392 58 0 10 chr6 21641150 21641443 -160773799 - AluY SINE Alu -19 292 3 12697 199 40 36 chr6 21641443 21642293 -160772949 - L1MA4A LINE L1 -124 6881 6035 25314 42 3 0 chr6 21642293 21646181 -160769061 - L1PA5 LINE L1 -8 6146 2212 12697 199 40 36 chr6 21646181 21647802 -160767440 - L1MA4A LINE L1 -970 6035 4421 2295 113 0 0 chr6 21647802 21648111 -160767131 + AluSg SINE Alu 2 310 0 12697 199 40 36 chr6 21648111 21650445 -160764797 - L1MA4A LINE L1 -2584 4421 2012 722 112 0 0 chr6 21650445 21650552 -160764690 - L1PA11 LINE L1 -1 6173 6067 12697 199 40 36 chr6 21650552 21652562 -160762680 - L1MA4A LINE L1 -4993 2012 10 477 84 0 0 chr6 21652617 21652688 -160762554 + (TA)n Simple_repeat Simple_repeat 2 72 0 499 360 75 0 chr6 21655254 21655440 -160759802 + MIR SINE MIR 47 246 -16 187 318 0 30 chr6 21656894 21656960 -160758282 + MIR3 SINE MIR 107 170 -38 2103 188 21 0 chr6 21658095 21658467 -160756775 + MLT2D LTR ERVL 4 383 -31 962 89 0 0 chr6 21658515 21658638 -160756604 - AluSg/x SINE Alu -25 287 165 2153 99 41 0 chr6 21659592 21659886 -160755356 + AluSx SINE Alu 1 306 -6 918 156 20 0 chr6 21659925 21660169 -160755073 + CT-rich Low_complexity Low_complexity 1 249 0 1705 173 23 16 chr6 21660170 21660476 -160754766 - AluJb SINE Alu -4 308 1 463 107 13 13 chr6 21660817 21660892 -160754350 + MSTB2 LTR MaLR 15 89 -368 2198 179 30 15 chr6 21660892 21661295 -160753947 + MSTB2 LTR MaLR 49 457 0 1817 190 84 13 chr6 21661707 21662170 -160753072 - LTR54B LTR ERV1 -2 496 1 640 285 90 42 chr6 21662604 21663087 -160752155 + MLT1G1 LTR MaLR 1 532 -23 247 269 154 0 chr6 21663244 21663322 -160751920 - L2 LINE L2 -12 3301 3212 336 376 91 12 chr6 21663398 21663563 -160751679 - L2 LINE L2 -5 3267 3090 1949 233 33 64 chr6 21663669 21664318 -160750924 + MLT1G LTR MaLR 3 590 0 1754 152 4 4 chr6 21665667 21665936 -160749306 - AluJo SINE Alu -30 282 14 266 253 27 0 chr6 21667684 21667759 -160747483 + MLT1L LTR MaLR 197 273 -342 2470 55 0 0 chr6 21668200 21668490 -160746752 + AluY SINE Alu 1 290 -21 399 279 23 0 chr6 21668498 21668584 -160746658 + FLAM_A SINE Alu 2 89 -44 234 281 123 19 chr6 21668793 21669053 -160746189 + L1M4 LINE L1 3689 3975 -2171 2219 102 0 0 chr6 21669132 21669460 -160745782 + AluSp SINE Alu 1 328 0 292 350 82 22 chr6 21669461 21669644 -160745598 + MIR SINE MIR 28 221 -41 21 0 0 0 chr6 21670795 21670816 -160744426 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 21670879 21670905 -160744337 + AT_rich Low_complexity Low_complexity 1 26 0 207 257 157 14 chr6 21671443 21671513 -160743729 - MIR3 SINE MIR -37 171 92 21 36 0 0 chr6 21671962 21671990 -160743252 + AT_rich Low_complexity Low_complexity 1 28 0 205 331 69 48 chr6 21672796 21672941 -160742301 + L2 LINE L2 3165 3312 -1 374 324 82 12 chr6 21673072 21673242 -160742000 + MIR SINE MIR 20 201 -61 222 171 0 0 chr6 21673301 21673336 -160741906 + L2 LINE L2 3222 3256 -16 23 0 0 0 chr6 21673567 21673590 -160741652 + AT_rich Low_complexity Low_complexity 1 23 0 1975 130 0 4 chr6 21674144 21674420 -160740822 + AluSx SINE Alu 1 275 -37 247 221 15 0 chr6 21674436 21674504 -160740738 + (TA)n Simple_repeat Simple_repeat 2 70 0 1721 109 121 8 chr6 21675016 21675305 -160739937 - AluSq SINE Alu 0 318 1 714 200 82 46 chr6 21676315 21676487 -160738755 + MER3 DNA MER1_type 3 184 -25 1731 169 91 0 chr6 21676487 21676818 -160738424 - MER46B DNA MER2_type 0 236 1 714 200 82 46 chr6 21676818 21676840 -160738402 + MER3 DNA MER1_type 184 204 -5 536 158 20 0 chr6 21677273 21677374 -160737868 + L1PA11 LINE L1 6067 6169 -5 782 197 0 0 chr6 21678159 21678291 -160736951 - FLAM_A SINE Alu -1 132 1 2485 205 44 32 chr6 21679265 21679884 -160735358 - MLT1E2 LTR MaLR 0 626 1 276 154 0 0 chr6 21679998 21680050 -160735192 + CT-rich Low_complexity Low_complexity 1 52 0 4934 23 0 0 chr6 21680242 21680816 -160734426 + L1PA3 LINE L1 5582 6155 0 1929 85 0 8 chr6 21681049 21681297 -160733945 + AluSc SINE Alu 34 279 -30 449 262 68 128 chr6 21681400 21681678 -160733564 - L1MEd LINE L1 -2644 3485 3192 1857 151 0 0 chr6 21681678 21681957 -160733285 - AluSx SINE Alu -4 308 30 449 262 68 128 chr6 21681957 21682068 -160733174 - L1MEd LINE L1 -2937 3192 3076 4540 71 3 0 chr6 21682068 21682662 -160732580 - L1PA7 LINE L1 -1 6153 5558 449 262 68 128 chr6 21682662 21683024 -160732218 - L1MEd LINE L1 -3053 3076 2767 517 294 72 43 chr6 21683369 21683858 -160731384 - L1MEd LINE L1 -902 1588 987 1528 311 46 52 chr6 21683866 21685281 -160729961 - L1M4 LINE L1 -1231 4915 3509 1191 243 137 44 chr6 21685476 21685898 -160729344 + MLT2B1 LTR ERVL 1 469 -51 15604 141 41 14 chr6 21685898 21688540 -160726702 - Tigger2 DNA MER2_type -1 2717 3 1191 243 137 44 chr6 21688540 21688569 -160726673 + MLT2B1 LTR ERVL 469 494 -26 258 192 0 0 chr6 21688569 21688621 -160726621 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 287 105 0 35 chr6 21688622 21688679 -160726563 + MLT2B1 LTR ERVL 464 518 -2 1118 176 126 50 chr6 21688681 21688959 -160726283 + MLT1A2-int LTR MaLR 1 299 -1072 2289 169 20 60 chr6 21689083 21689581 -160725661 + MER66B LTR ERV1 9 486 0 1520 213 33 96 chr6 21689584 21689865 -160725377 + MLT1A2-int LTR MaLR 1314 1558 -177 7435 41 2 0 chr6 21689865 21691196 -160724046 - L1PA5 LINE L1 0 6154 4825 1520 213 33 96 chr6 21691196 21691364 -160723878 + MLT1A2-int LTR MaLR 1558 1735 0 1017 218 53 84 chr6 21691364 21691744 -160723498 + MLT1A2 LTR MaLR 1 368 -6 654 276 74 47 chr6 21692280 21692795 -160722447 - L1MEd LINE L1 -4863 1256 728 21 57 0 0 chr6 21693661 21693696 -160721546 + AT_rich Low_complexity Low_complexity 1 35 0 305 322 0 49 chr6 21693702 21693845 -160721397 - L2 LINE L2 0 3313 3178 247 245 0 0 chr6 21693839 21693888 -160721354 - MIR SINE MIR 0 262 214 * 302 0 0 26 chr6 21694274 21694313 -160720929 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chr6 21695946 21695967 -160719275 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 822 254 12 0 chr6 21697352 21697525 -160717717 + MER5A DNA MER1_type 9 183 -6 223 321 116 9 chr6 21698397 21698509 -160716733 + MIR3 SINE MIR 4 127 -81 635 293 72 31 chr6 21698526 21698844 -160716398 + L2 LINE L2 2970 3300 -13 255 61 0 0 chr6 21698844 21698877 -160716365 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 245 356 0 19 chr6 21698883 21698987 -160716255 + MIR SINE MIR 19 120 -142 387 320 39 19 chr6 21699367 21699523 -160715719 + MIR3 SINE MIR 39 197 -11 249 33 0 0 chr6 21702013 21702043 -160713199 + (CA)n Simple_repeat Simple_repeat 2 31 0 256 322 78 0 chr6 21702348 21702438 -160712804 - L2 LINE L2 -3 3269 3173 24 32 0 0 chr6 21702502 21702533 -160712709 + AT_rich Low_complexity Low_complexity 1 31 0 209 326 35 12 chr6 21702579 21702665 -160712577 - MIR SINE MIR -90 118 31 2393 85 31 8 chr6 21702801 21703154 -160712088 + L1P4 LINE L1 5272 5632 -536 254 176 39 0 chr6 21703234 21703285 -160711957 + MER21B LTR ERV1 614 666 -197 477 0 0 0 chr6 21703288 21703341 -160711901 + (AATTG)n Simple_repeat Simple_repeat 1 53 0 193 317 77 44 chr6 21703607 21703790 -160711452 - L2 LINE L2 -1378 1936 1748 1253 201 179 128 chr6 21703856 21704309 -160710933 + MLT2B3 LTR ERVL 1 524 -30 326 337 0 0 chr6 21704338 21704433 -160710809 - L1MC4 LINE L1 -1334 6708 6614 * 339 272 0 22 chr6 21704355 21704447 -160710795 + L1MC4 LINE L1 6614 6703 -1339 257 150 0 67 chr6 21704483 21704529 -160710713 + MLT2B1 LTR ERVL 465 508 -12 1788 137 68 44 chr6 21704529 21704895 -160710347 - THE1C LTR MaLR 0 375 1 257 150 0 67 chr6 21704895 21704908 -160710334 + MLT2B1 LTR ERVL 508 520 0 337 331 135 0 chr6 21705119 21705252 -160709990 - MIR3 SINE MIR -23 185 35 202 343 70 47 chr6 21705345 21705517 -160709725 + L2 LINE L2 2912 3087 -185 2275 114 0 7 chr6 21706014 21706321 -160708921 - AluSx SINE Alu -7 305 1 1617 183 17 3 chr6 21707042 21707331 -160707911 - AluJo SINE Alu -13 299 7 21 0 0 0 chr6 21708024 21708045 -160707197 + AT_rich Low_complexity Low_complexity 1 21 0 329 359 32 19 chr6 21709143 21709299 -160705943 - MIR3 SINE MIR -14 194 37 2416 44 17 10 chr6 21709603 21709899 -160705343 - AluY SINE Alu -13 298 1 252 402 49 49 chr6 21710496 21710742 -160704500 + L2 LINE L2 3027 3272 0 2330 99 3 0 chr6 21710930 21711234 -160704008 - AluSx SINE Alu -7 305 1 233 220 0 0 chr6 21712421 21712471 -160702771 + (ATG)n Simple_repeat Simple_repeat 1 50 0 184 354 31 21 chr6 21712543 21712639 -160702603 - MIR SINE MIR -161 101 5 425 104 0 30 chr6 21712784 21712851 -160702391 - AluSx SINE Alu -12 298 234 1334 117 0 0 chr6 21712851 21713030 -160702212 - AluSx SINE Alu -133 179 1 323 221 142 31 chr6 21713462 21713589 -160701653 - MLT1H LTR MaLR 0 549 409 227 184 0 0 chr6 21715292 21715341 -160699901 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 238 317 71 107 chr6 21716885 21717166 -160698076 - L2 LINE L2 -39 3233 2963 576 186 6 3 chr6 21717225 21717388 -160697854 - MER3 DNA MER1_type -1 208 2 260 311 131 18 chr6 21717388 21717610 -160697632 - L2 LINE L2 -1035 2279 2033 279 0 0 0 chr6 21717745 21717776 -160697466 + (TG)n Simple_repeat Simple_repeat 2 32 0 665 222 125 6 chr6 21717863 21718039 -160697203 + MLT1D LTR MaLR 309 505 0 250 279 0 67 chr6 21718097 21718201 -160697041 - MER102b DNA MER1_type -9 332 236 200 309 22 81 chr6 21718937 21719160 -160696082 + L2 LINE L2 2288 2497 -817 590 250 49 12 chr6 21719245 21719409 -160695833 + MIR SINE MIR 13 182 -80 2136 89 7 0 chr6 21719667 21719947 -160695295 - AluSp SINE Alu -19 294 13 21 0 0 0 chr6 21721244 21721265 -160693977 + AT_rich Low_complexity Low_complexity 1 21 0 2526 87 119 5 chr6 21721969 21722371 -160692871 - LTR7 LTR ERV1 -2 448 1 2196 106 48 13 chr6 21722371 21722748 -160692494 - HERVH LTR ERV1 0 7713 7324 1331 121 23 0 chr6 21722748 21722963 -160692279 - HERVH LTR ERV1 -1894 5819 5600 4020 145 3 3 chr6 21722964 21723626 -160691616 - HERVH LTR ERV1 -2564 5149 4488 6034 74 1 2 chr6 21723628 21724483 -160690759 - HERVH LTR ERV1 -3720 3993 3140 * 15295 92 14 16 chr6 21724480 21727321 -160687921 - HERVH LTR ERV1 -4729 2984 25 205 310 52 60 chr6 21728904 21729020 -160686222 + MIR3 SINE MIR 3 117 -91 233 224 0 0 chr6 21729880 21729929 -160685313 - L2 LINE L2 -3 3310 3262 2333 92 0 3 chr6 21730186 21730481 -160684761 - AluSq SINE Alu -19 294 1 2110 92 11 4 chr6 21730689 21730962 -160684280 - AluSq SINE Alu -16 297 23 305 267 38 30 chr6 21731592 21731723 -160683519 - MER94 DNA DNA -2 132 1 1658 165 73 12 chr6 21733207 21733547 -160681695 - MER46B DNA MER2_type 0 236 1 2329 106 3 0 chr6 21733716 21734018 -160681224 - AluSg SINE Alu -7 303 1 266 308 110 14 chr6 21734178 21734324 -160680918 + L3b LINE CR1 1217 1376 -207 21 0 0 0 chr6 21734724 21734745 -160680497 + AT_rich Low_complexity Low_complexity 1 21 0 3011 139 24 71 chr6 21734833 21735414 -160679828 - MLT2B3 LTR ERVL 0 554 1 213 39 0 0 chr6 21735440 21735466 -160679776 + (TG)n Simple_repeat Simple_repeat 1 26 0 484 249 107 3 chr6 21735914 21736054 -160679188 - MIR3 SINE MIR 0 208 59 204 299 37 28 chr6 21736129 21736236 -160679006 - MIR SINE MIR -92 170 63 189 0 0 0 chr6 21737117 21737138 -160678104 + (CA)n Simple_repeat Simple_repeat 2 22 0 318 182 68 11 chr6 21737253 21737341 -160677901 - MER94 DNA DNA -41 93 1 410 163 0 0 chr6 21737830 21737910 -160677332 - L1MB3 LINE L1 -2 6181 6102 2137 102 7 0 chr6 21737922 21738232 -160677010 + AluSx SINE Alu 1 312 0 183 355 128 28 chr6 21738236 21738377 -160676865 + L2 LINE L2 3117 3271 -1 2064 142 3 0 chr6 21738443 21738738 -160676504 - AluSx SINE Alu -16 296 1 373 310 133 19 chr6 21739056 21739214 -160676028 + MIR SINE MIR 29 204 -58 5892 99 17 3 chr6 21739270 21739332 -160675910 + L1PB1 LINE L1 4978 5038 -1113 2217 102 3 0 chr6 21739332 21739625 -160675617 + AluSg SINE Alu 6 299 -11 5892 99 17 3 chr6 21739625 21740376 -160674866 + L1PB1 LINE L1 5038 5807 -344 317 62 21 0 chr6 21740376 21740424 -160674818 + (TA)n Simple_repeat Simple_repeat 2 50 0 5892 99 17 3 chr6 21740424 21740766 -160674476 + L1PB1 LINE L1 5807 6143 -8 1039 243 18 5 chr6 21742128 21742346 -160672896 - MER58A DNA MER1_type -3 221 1 1274 198 124 21 chr6 21743529 21743868 -160671374 - MLT1A2 LTR MaLR 0 374 1 26 0 0 0 chr6 21744218 21744244 -160670998 + AT_rich Low_complexity Low_complexity 1 26 0 2134 117 0 0 chr6 21744275 21744584 -160670658 - AluSx SINE Alu 0 309 1 21 36 0 0 chr6 21744621 21744649 -160670593 + AT_rich Low_complexity Low_complexity 1 28 0 346 347 133 28 chr6 21746874 21747396 -160667846 - L2 LINE L2 0 3313 2724 47 53 0 0 chr6 21747866 21747941 -160667301 + AT_rich Low_complexity Low_complexity 1 75 0 221 377 66 0 chr6 21748258 21748380 -160666862 - MIR3 SINE MIR -36 172 43 2738 117 8 0 chr6 21749015 21749416 -160665826 - MER1A DNA MER1_type 0 529 126 1936 148 96 0 chr6 21749416 21749748 -160665494 - THE1B LTR MaLR 0 364 1 10535 101 10 61 chr6 21749748 21751413 -160663829 - THE1B-int LTR MaLR 0 1580 1 1709 130 28 1 chr6 21751413 21751732 -160663510 - THE1B LTR MaLR 0 364 3 818 154 0 0 chr6 21751734 21751864 -160663378 - MER1A DNA MER1_type -397 130 1 476 179 41 123 chr6 21751955 21752150 -160663092 - MER58A DNA MER1_type 0 224 46 2133 262 76 13 chr6 21752168 21752565 -160662677 + L1MB2 LINE L1 1161 1532 -4850 222 37 0 0 chr6 21752565 21752592 -160662650 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 2133 262 76 13 chr6 21752592 21753261 -160661981 + L1MB2 LINE L1 1532 2377 -4005 1085 196 13 0 chr6 21753262 21753491 -160661751 - Tigger2 DNA MER2_type -1 2717 2486 1028 215 0 0 chr6 21753492 21753711 -160661531 + L1 LINE L1 4096 4314 -1832 424 107 12 60 chr6 21753725 21753809 -160661433 + L1P LINE L1 4697 4776 -1370 389 237 0 42 chr6 21753915 21754033 -160661209 + L1 LINE L1 4777 4889 -1257 1268 127 9 9 chr6 21754137 21754358 -160660884 - Tigger2 DNA MER2_type -225 2493 2273 385 178 0 14 chr6 21754345 21754418 -160660824 - Tigger2 DNA MER2_type -2646 72 1 * 359 132 51 139 chr6 21754418 21754576 -160660666 + L1MB2 LINE L1 2378 2532 -3850 910 205 100 0 chr6 21754584 21754774 -160660468 - Tigger7 DNA MER2_type -496 209 1 1045 255 10 7 chr6 21754774 21755076 -160660166 + L1MB2 LINE L1 2860 3162 -3220 11264 204 16 22 chr6 21755084 21758169 -160657073 + L1PA13 LINE L1 1105 4169 -2628 186 43 0 0 chr6 21758169 21758192 -160657050 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 11264 204 16 22 chr6 21758192 21758678 -160656564 + L1PA13 LINE L1 4169 4656 -2141 2893 78 4 13 chr6 21758679 21759094 -160656148 + MLT2A1 LTR ERVL 1 480 -40 192 200 0 0 chr6 21759094 21759134 -160656108 + (CA)n Simple_repeat Simple_repeat 2 41 0 235 100 25 0 chr6 21759134 21759174 -160656068 + MLT2A1 LTR ERVL 397 437 -7 6700 192 27 6 chr6 21759174 21759244 -160655998 + L1PA13 LINE L1 4646 4713 -2101 1693 104 0 0 chr6 21759244 21759465 -160655777 + AluY SINE Alu 66 286 -25 6700 192 27 6 chr6 21759465 21761533 -160653709 + L1PA13 LINE L1 4713 6814 0 6404 226 65 24 chr6 21761535 21762803 -160652439 + L1MB2 LINE L1 3164 4552 -1830 321 26 0 0 chr6 21762803 21762841 -160652401 + (CA)n Simple_repeat Simple_repeat 2 39 0 6404 226 65 24 chr6 21762841 21763632 -160651610 + L1MB2 LINE L1 4552 5309 -1073 3237 198 59 36 chr6 21763652 21764588 -160650654 + L1MB2 LINE L1 5434 6389 -18 1323 69 0 0 chr6 21765391 21765566 -160649676 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2147 104 0 0 chr6 21765567 21765845 -160649397 - AluY SINE Alu -33 278 1 34 42 0 0 chr6 21765895 21765943 -160649299 + AT_rich Low_complexity Low_complexity 1 48 0 225 311 143 8 chr6 21766699 21766818 -160648424 - L2 LINE L2 -1 3271 3137 476 308 110 9 chr6 21767885 21768112 -160647130 + MIR SINE MIR 12 261 -1 240 35 0 0 chr6 21768810 21768839 -160646403 + (ATG)n Simple_repeat Simple_repeat 1 29 0 180 375 31 10 chr6 21769094 21769190 -160646052 - L2 LINE L2 -160 3112 3015 315 71 0 0 chr6 21769406 21769448 -160645794 + (CA)n Simple_repeat Simple_repeat 2 43 0 1536 184 223 39 chr6 21769453 21769910 -160645332 + MLT1F LTR MaLR 2 542 0 1737 180 7 10 chr6 21770151 21770440 -160644802 - AluJo SINE Alu -15 297 10 3666 143 87 39 chr6 21770440 21771109 -160644133 + LTR12 LTR ERV1 3 703 -11 2328 91 33 0 chr6 21771110 21771448 -160643794 + LTR12 LTR ERV1 383 714 0 430 297 67 67 chr6 21772879 21773384 -160641858 + L2 LINE L2 2809 3313 0 26 30 0 0 chr6 21773385 21773418 -160641824 + AT_rich Low_complexity Low_complexity 1 33 0 469 183 70 9 chr6 21773539 21773654 -160641588 + MIR SINE MIR 79 200 -62 2661 68 0 0 chr6 21773861 21774171 -160641071 - AluSg SINE Alu 0 310 1 368 235 101 13 chr6 21774411 21774560 -160640682 + L1ME3A LINE L1 5913 6074 -96 207 69 0 0 chr6 21774627 21774656 -160640586 + (CA)n Simple_repeat Simple_repeat 1 29 0 234 0 0 0 chr6 21774861 21774887 -160640355 + (TC)n Simple_repeat Simple_repeat 2 27 0 226 200 30 80 chr6 21775583 21775683 -160639559 + L2 LINE L2 2564 2658 -656 243 311 17 25 chr6 21776007 21776126 -160639116 + L2 LINE L2 3155 3272 0 263 238 70 98 chr6 21776130 21776273 -160638969 - MIR3 SINE MIR -50 158 20 181 233 47 35 chr6 21776292 21776378 -160638864 - L3b LINE CR1 -351 1232 1146 3633 170 32 17 chr6 21776721 21777444 -160637798 - L1MB4 LINE L1 -1 6179 5446 906 194 184 43 chr6 21778490 21778927 -160636315 + MLT1E1 LTR MaLR 1 580 -74 1982 109 18 0 chr6 21779000 21779276 -160635966 - AluSp SINE Alu -1 312 32 4278 138 98 75 chr6 21779277 21780268 -160634974 + pTR5 LTR ERV1 7 443 -271 187 53 26 26 chr6 21780268 21780306 -160634936 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4278 138 98 75 chr6 21780306 21780559 -160634683 + pTR5 LTR ERV1 443 689 -25 381 22 0 0 chr6 21781356 21781402 -160633840 + (TG)n Simple_repeat Simple_repeat 2 47 0 463 188 27 89 chr6 21782050 21782162 -160633080 + MLT1C LTR MaLR 1 105 -362 416 143 0 0 chr6 21782153 21782216 -160633026 + MLT1C LTR MaLR 290 352 -115 * 1756 154 3 42 chr6 21782218 21782530 -160632712 + MLT1B LTR MaLR 91 390 0 349 247 160 40 chr6 21783009 21783159 -160632083 - MER5A DNA MER1_type -9 180 13 294 277 45 23 chr6 21784033 21784171 -160631071 - MIR3 SINE MIR -22 186 45 238 262 47 84 chr6 21784353 21784460 -160630782 + MER5B DNA MER1_type 2 104 -74 * 321 183 28 4 chr6 21784459 21784569 -160630673 + MER5A DNA MER1_type 35 189 0 196 346 13 13 chr6 21784591 21784669 -160630573 + MER5B DNA MER1_type 56 133 -45 1479 249 25 6 chr6 21784989 21785347 -160629895 + MLT1A1 LTR MaLR 1 365 0 404 291 122 5 chr6 21785377 21785573 -160629669 + MIR SINE MIR 29 247 -15 22 0 0 0 chr6 21785786 21785808 -160629434 + AT_rich Low_complexity Low_complexity 1 22 0 2336 71 0 0 chr6 21786790 21787105 -160628137 + AluY SINE Alu 1 315 0 701 271 21 5 chr6 21787613 21787805 -160627437 - MIR SINE MIR -15 247 53 527 252 91 24 chr6 21788031 21788241 -160627001 - MLT1G1 LTR MaLR -269 326 103 306 0 0 0 chr6 21788244 21788278 -160626964 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 191 326 14 64 chr6 21788278 21788419 -160626823 - L2 LINE L2 -428 2886 2753 186 350 88 10 chr6 21790156 21790350 -160624892 - L2 LINE L2 -482 2832 2624 4842 112 0 0 chr6 21790363 21791040 -160624202 - L1PA13 LINE L1 -39 6124 5448 2404 280 24 25 chr6 21791263 21791938 -160623304 - MER115 DNA AcHobo -17 676 3 195 139 0 0 chr6 21791971 21792007 -160623235 + (A)n Simple_repeat Simple_repeat 1 36 0 258 312 118 0 chr6 21792835 21792928 -160622314 - MIR SINE MIR -110 152 49 214 282 209 9 chr6 21794738 21794848 -160620394 + MIR SINE MIR 87 218 -44 1342 183 48 41 chr6 21795072 21795362 -160619880 + AluJo SINE Alu 1 292 -20 894 144 63 0 chr6 21795895 21796069 -160619173 - L1MA7 LINE L1 -3 6288 6104 2357 117 10 0 chr6 21796610 21796919 -160618323 - AluSx SINE Alu 0 312 1 2273 103 0 17 chr6 21799232 21799533 -160615709 + AluSq SINE Alu 1 296 -17 221 57 29 0 chr6 21799608 21799643 -160615599 + (CA)n Simple_repeat Simple_repeat 1 36 0 249 33 0 0 chr6 21800158 21800188 -160615054 + (GA)n Simple_repeat Simple_repeat 1 30 0 2388 107 0 0 chr6 21800504 21800812 -160614430 + AluSx SINE Alu 1 308 -4 1495 197 13 30 chr6 21801535 21801840 -160613402 + AluJo SINE Alu 1 300 -12 252 0 0 0 chr6 21802399 21802427 -160612815 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr6 21802426 21802452 -160612790 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 897 149 0 8 chr6 21802572 21802728 -160612514 + AluJb SINE Alu 155 309 0 2409 100 0 0 chr6 21804981 21805291 -160609951 + AluSx SINE Alu 1 310 -2 1454 159 0 33 chr6 21856353 21856598 -160558644 - AluJo SINE Alu -75 237 1 987 219 9 19 chr6 21856647 21856857 -160558385 + MER3 DNA MER1_type 2 209 0 2193 109 26 7 chr6 21856974 21857277 -160557965 - AluSx SINE Alu -3 309 1 199 376 86 0 chr6 21857659 21857776 -160557466 - L2 LINE L2 -464 2850 2724 3085 163 42 11 chr6 21857814 21858040 -160557202 + L1MB3 LINE L1 5609 5827 -356 1978 103 88 0 chr6 21858040 21858312 -160556930 + AluSp SINE Alu 1 296 -17 3085 163 42 11 chr6 21858312 21858639 -160556603 + L1MB3 LINE L1 5827 6179 -4 1343 273 147 10 chr6 21858653 21858679 -160556563 + L2 LINE L2 2565 2586 -727 2444 89 0 6 chr6 21858679 21858993 -160556249 - AluSq SINE Alu -1 312 1 1343 273 147 10 chr6 21858993 21859415 -160555827 + L2 LINE L2 2586 2949 -364 864 19 19 28 chr6 21859415 21859543 -160555699 + L1PA3 LINE L1 6048 6155 0 1343 273 147 10 chr6 21859543 21859745 -160555497 + L2 LINE L2 2949 3313 0 516 232 151 27 chr6 21859913 21860098 -160555144 - L2 LINE L2 -887 2427 2220 44 46 0 0 chr6 21860314 21860379 -160554863 + AT_rich Low_complexity Low_complexity 1 65 0 263 254 0 0 chr6 21860503 21860566 -160554676 - MIR3 SINE MIR -41 167 105 2153 116 3 52 chr6 21860681 21860904 -160554338 + L1PB4 LINE L1 5585 5785 -371 351 0 0 0 chr6 21860904 21860943 -160554299 + (CA)n Simple_repeat Simple_repeat 1 39 0 2153 116 3 52 chr6 21860943 21861081 -160554161 + L1PB4 LINE L1 5785 5928 -228 * 2252 110 27 9 chr6 21861068 21861405 -160553837 + L1PA16 LINE L1 5686 6028 -138 24 67 0 0 chr6 21861413 21861458 -160553784 + AT_rich Low_complexity Low_complexity 1 45 0 436 158 89 0 chr6 21861466 21861567 -160553675 + L1MDa LINE L1 1631 1740 -4800 1479 165 28 0 chr6 21861644 21861892 -160553350 + L1PB4 LINE L1 5892 6146 -10 271 307 156 34 chr6 21862470 21862649 -160552593 + MLT1J LTR MaLR 115 315 -196 281 218 126 0 chr6 21862701 21862788 -160552454 + MLT1L LTR MaLR 501 598 -17 1652 155 15 0 chr6 21862967 21863231 -160552011 - AluJb SINE Alu -44 268 1 984 193 19 0 chr6 21866359 21866520 -160548722 + FAM SINE Alu 1 164 -11 432 256 56 41 chr6 21866552 21866697 -160548545 + MIR SINE MIR 1 155 -53 2068 93 90 0 chr6 21866697 21866976 -160548266 - AluSg SINE Alu -6 304 1 432 256 56 41 chr6 21866976 21866995 -160548247 + MIR SINE MIR 155 172 -36 278 260 144 0 chr6 21867025 21867129 -160548113 + MIR SINE MIR 4 122 -140 742 218 0 0 chr6 21867215 21867339 -160547903 - FLAM_A SINE Alu -9 124 1 1268 197 0 0 chr6 21867344 21867552 -160547690 - MER58A DNA MER1_type -16 208 1 210 158 0 0 chr6 21867786 21867824 -160547418 + A-rich Low_complexity Low_complexity 1 38 0 462 246 36 98 chr6 21868347 21868571 -160546671 + MLT1J LTR MaLR 299 508 -3 808 266 112 16 chr6 21868581 21868623 -160546619 - HsTC2c DNA Tc2 -1170 728 691 1792 52 4 0 chr6 21868623 21868853 -160546389 - L1PA4 LINE L1 -3 6152 5922 808 266 112 16 chr6 21868853 21869122 -160546120 - HsTC2c DNA Tc2 -1207 691 387 340 231 0 15 chr6 21869134 21869199 -160546043 + MER91A DNA MER1_type 28 91 -105 4384 159 72 39 chr6 21869516 21870827 -160544415 + pTR5 LTR ERV1 734 2438 0 5411 171 239 32 chr6 21870837 21872242 -160543000 + pTR5 LTR ERV1 743 2438 0 1824 161 3 7 chr6 21872371 21872669 -160542573 + AluSx SINE Alu 1 297 -15 1648 125 4 36 chr6 21873301 21873549 -160541693 + AluSc SINE Alu 46 285 -24 1381 169 103 63 chr6 21873612 21873979 -160541263 + MLT1B LTR MaLR 1 382 -8 2158 102 7 3 chr6 21874726 21875053 -160540189 - AluSx SINE Alu 0 328 1 2137 125 0 13 chr6 21875322 21875626 -160539616 + AluSx SINE Alu 1 300 -12 298 316 0 11 chr6 21876106 21876201 -160539041 + GA-rich Low_complexity Low_complexity 3 96 0 344 248 92 46 chr6 21876234 21876472 -160538770 + L1M4 LINE L1 3791 4039 -2107 692 199 0 8 chr6 21876496 21876627 -160538615 + FLAM_C SINE Alu 2 131 -12 1506 170 25 28 chr6 21876634 21876916 -160538326 + AluJo SINE Alu 1 281 -31 1197 263 28 12 chr6 21877069 21877392 -160537850 + MER93a LTR ERV1 75 402 0 1799 171 3 0 chr6 21877601 21877894 -160537348 + AluJo SINE Alu 7 300 -12 2347 110 0 10 chr6 21878820 21879130 -160536112 - AluSx SINE Alu -5 307 1 401 218 40 30 chr6 21879887 21879988 -160535254 - MER5A DNA MER1_type -84 105 4 345 223 58 10 chr6 21880289 21880392 -160534850 + Charlie8 DNA MER1_type 1 108 -2309 327 351 0 30 chr6 21880393 21880524 -160534718 - MER5B DNA MER1_type 0 178 52 2395 162 14 0 chr6 21880525 21880944 -160534298 - L1MC3 LINE L1 0 7785 7361 246 261 0 15 chr6 21880945 21881010 -160534232 - MER5B DNA MER1_type -114 64 1 695 148 0 9 chr6 21881034 21881142 -160534100 + AluJ SINE Alu 24 130 -182 181 288 38 38 chr6 21881356 21881436 -160533806 + L2 LINE L2 3193 3272 0 727 164 8 8 chr6 21881518 21881640 -160533602 + AluJ SINE Alu 2 123 -189 855 229 0 7 chr6 21881693 21881871 -160533371 + AluJ SINE Alu 132 308 0 234 135 0 0 chr6 21881948 21881985 -160533257 + MLT1J LTR MaLR 99 135 -376 436 66 33 0 chr6 21882003 21882064 -160533178 + MADE1 DNA Mariner 2 64 -16 442 289 106 29 chr6 21882587 21882795 -160532447 + MLT1J LTR MaLR 241 464 -47 830 128 0 16 chr6 21882895 21883020 -160532222 - FLAM_A SINE Alu -10 123 1 504 186 39 0 chr6 21883336 21883438 -160531804 - L2 LINE L2 -22 3291 3186 285 317 106 0 chr6 21883878 21884001 -160531241 - MIR SINE MIR -31 231 96 1358 94 0 6 chr6 21884128 21884308 -160530934 - AluSg/x SINE Alu -7 303 125 984 269 100 59 chr6 21884984 21885512 -160529730 - MLT1K LTR MaLR -8 580 31 218 325 78 0 chr6 21886875 21886984 -160528258 - MIR SINE MIR -65 143 28 429 281 141 5 chr6 21887787 21887972 -160527270 + MIR SINE MIR 4 213 -49 1852 137 7 25 chr6 21889478 21889763 -160525479 + AluJb SINE Alu 1 280 -32 213 39 0 0 chr6 21889768 21889794 -160525448 + (CA)n Simple_repeat Simple_repeat 1 26 0 2469 28 42 0 chr6 21890151 21890439 -160524803 + AluY SINE Alu 1 300 -11 272 294 56 32 chr6 21890440 21890566 -160524676 - MER94 DNA DNA -4 130 2 259 19 0 111 chr6 21891807 21891861 -160523381 + (TA)n Simple_repeat Simple_repeat 1 48 0 408 88 0 0 chr6 21891861 21891918 -160523324 + (TG)n Simple_repeat Simple_repeat 2 58 0 607 306 23 9 chr6 21892377 21892593 -160522649 + MIR SINE MIR 30 248 -14 2186 107 3 0 chr6 21893050 21893349 -160521893 - AluY SINE Alu -11 300 1 695 176 16 0 chr6 21893946 21894071 -160521171 - FLAM_A SINE Alu -2 131 5 421 189 242 0 chr6 21894096 21894191 -160521051 + MER33 DNA MER1_type 1 118 -206 894 191 27 16 chr6 21894192 21894380 -160520862 + AluJo SINE Alu 117 306 -6 706 138 78 6 chr6 21894393 21894560 -160520682 + MER33 DNA MER1_type 166 344 -19 884 199 18 6 chr6 21895281 21895493 -160519749 - AluSg/x SINE Alu 0 345 132 1476 254 72 19 chr6 21895494 21896127 -160519115 + L2 LINE L2 2622 3312 -1 387 298 90 53 chr6 21896162 21896452 -160518790 - L2 LINE L2 -125 3188 2873 2218 97 3 7 chr6 21896452 21896751 -160518491 + AluSq SINE Alu 1 298 -15 387 298 90 53 chr6 21896751 21896863 -160518379 - L2 LINE L2 -440 2873 2767 1648 235 47 28 chr6 21897384 21897568 -160517674 + MLT1D LTR MaLR 1 180 -325 2417 83 0 49 chr6 21897568 21897894 -160517348 + AluSp SINE Alu 1 310 -3 1648 235 47 28 chr6 21897894 21898202 -160517040 + MLT1D LTR MaLR 180 502 -3 1994 156 21 9 chr6 21898289 21898629 -160516613 - MER2 DNA MER2_type 0 344 1 301 98 0 0 chr6 21898726 21898767 -160516475 - MER2 DNA MER2_type -303 42 2 2295 101 0 23 chr6 21899532 21899840 -160515402 + AluSx SINE Alu 1 301 -11 223 271 0 57 chr6 21899856 21899926 -160515316 + L2 LINE L2 3199 3264 -8 241 293 13 0 chr6 21899940 21900015 -160515227 - L2 LINE L2 -1041 2273 2198 180 309 0 36 chr6 21900741 21900825 -160514417 - L2 LINE L2 -3 3269 3189 23 0 0 0 chr6 21901540 21901563 -160513679 + AT_rich Low_complexity Low_complexity 1 23 0 1789 176 3 3 chr6 21901563 21901853 -160513389 - AluJo SINE Alu -22 290 1 2196 115 0 0 chr6 21901877 21902164 -160513078 + AluSx SINE Alu 1 287 -25 213 196 0 0 chr6 21902317 21902368 -160512874 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 214 307 89 50 chr6 21902909 21903010 -160512232 - L2 LINE L2 0 3272 3168 451 225 0 0 chr6 21903364 21903444 -160511798 + MLT1G1 LTR MaLR 8 87 -508 526 196 4 6 chr6 21903448 21903693 -160511549 + AluJb SINE Alu 1 300 -2 838 220 12 0 chr6 21903731 21903899 -160511343 + AluSg/x SINE Alu 135 304 -6 1683 233 103 19 chr6 21903937 21904401 -160510841 + MLT1G3 LTR MaLR 28 530 0 951 215 17 0 chr6 21905002 21905174 -160510068 + MER45A DNA AcHobo 1 175 -3 1886 162 0 13 chr6 21905229 21905543 -160509699 + AluJb SINE Alu 1 310 -2 477 139 0 25 chr6 21905753 21905832 -160509410 + Tigger2 DNA MER2_type 1 77 -2641 * 2812 118 18 29 chr6 21905813 21906264 -160508978 + Tigger2 DNA MER2_type 2273 2718 0 2291 98 3 22 chr6 21906309 21906626 -160508616 - AluY SINE Alu 0 311 1 2207 143 95 23 chr6 21907086 21907485 -160507757 + MSTA LTR MaLR 1 428 0 2305 85 0 0 chr6 21908309 21908592 -160506650 - AluSx SINE Alu -29 283 1 3706 139 11 11 chr6 21908601 21909214 -160506028 - L1MC1 LINE L1 -15 6318 5706 22 56 0 0 chr6 21909222 21909258 -160505984 + AT_rich Low_complexity Low_complexity 1 36 0 2382 90 0 3 chr6 21909777 21910077 -160505165 - AluSp SINE Alu -14 299 1 1997 114 61 0 chr6 21910105 21910385 -160504857 + AluSg SINE Alu 1 297 -13 318 284 88 25 chr6 21910404 21910608 -160504634 - L1ME LINE L1 -282 5839 5623 659 273 110 9 chr6 21910723 21910999 -160504243 - MLT1J LTR MaLR -146 304 40 296 265 65 16 chr6 21911012 21911197 -160504045 - L1ME LINE L1 -513 5608 5384 966 261 95 46 chr6 21911667 21912057 -160503185 - MLT1I LTR MaLR 0 409 1 209 400 61 0 chr6 21912166 21912281 -160502961 + L2 LINE L2 3144 3265 -7 2080 123 3 3 chr6 21912335 21912620 -160502622 + AluSq SINE Alu 1 285 -28 899 246 128 35 chr6 21913208 21913574 -160501668 - MLT1I LTR MaLR -2 407 8 2355 75 24 0 chr6 21914372 21914664 -160500578 - AluSq SINE Alu -14 299 1 498 291 106 13 chr6 21914818 21915055 -160500187 - L1ME4a LINE L1 -258 5863 5605 1439 244 111 12 chr6 21915055 21915560 -160499682 + MLT1G LTR MaLR 1 590 0 370 288 17 8 chr6 21915560 21915678 -160499564 - L1ME4a LINE L1 -512 5609 5491 262 179 71 24 chr6 21915716 21915800 -160499442 - L1MC5 LINE L1 -37 7924 7837 849 216 24 0 chr6 21915898 21916065 -160499177 - FRAM SINE Alu -5 171 1 617 307 11 38 chr6 21916201 21916465 -160498777 - MIR SINE MIR -1 261 5 1913 125 0 48 chr6 21917607 21917919 -160497323 + AluJo SINE Alu 1 297 -15 465 211 79 0 chr6 21918150 21918264 -160496978 - MIR SINE MIR -18 244 122 2045 123 10 3 chr6 21919321 21919623 -160495619 - AluSx SINE Alu -8 304 1 423 0 0 0 chr6 21919729 21919776 -160495466 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2168 104 0 0 chr6 21920253 21920552 -160494690 + AluSq SINE Alu 1 299 -14 327 327 136 45 chr6 21920614 21920732 -160494510 + L2 LINE L2 2153 2259 -1055 252 0 0 0 chr6 21920732 21920760 -160494482 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 351 0 0 0 chr6 21920759 21920798 -160494444 + (TG)n Simple_repeat Simple_repeat 2 40 0 327 327 136 45 chr6 21920760 21921214 -160494028 + L2 LINE L2 2259 2736 -578 317 294 42 8 chr6 21921251 21921370 -160493872 + LTR33 LTR ERVL 3 125 -396 282 186 17 17 chr6 21921610 21921669 -160493573 + LTR33 LTR ERVL 456 514 -7 357 278 93 0 chr6 21921670 21921767 -160493475 + L2 LINE L2 3167 3272 0 1601 173 0 35 chr6 21921908 21922042 -160493200 + AluJo SINE Alu 9 146 -166 2105 101 0 19 chr6 21922042 21922349 -160492893 + AluSx SINE Alu 1 301 -11 1601 173 0 35 chr6 21922349 21922503 -160492739 + AluJo SINE Alu 146 287 -25 487 331 35 7 chr6 21922757 21922902 -160492340 - L2 LINE L2 -8 3264 3116 2645 134 71 5 chr6 21923064 21923488 -160491754 - LTR47A LTR ERVL 0 452 1 787 171 47 12 chr6 21923685 21923855 -160491387 + AluJo SINE Alu 121 296 -16 221 262 49 0 chr6 21924866 21924927 -160490315 + L2 LINE L2 3250 3313 0 302 264 73 9 chr6 21924935 21925045 -160490197 - L1MC/D LINE L1 -1950 5858 5742 254 179 15 15 chr6 21925105 21925177 -160490065 - L1MC/D LINE L1 -526 5595 5525 2024 64 40 47 chr6 21925891 21926187 -160489055 - AluY SINE Alu -17 294 1 326 239 9 80 chr6 21926780 21926893 -160488349 + MLT1K LTR MaLR 180 284 -304 1566 176 21 3 chr6 21927134 21927424 -160487818 + AluJb SINE Alu 1 295 -17 1882 129 0 3 chr6 21927424 21927710 -160487532 + AluSq SINE Alu 21 305 -8 275 304 7 93 chr6 21929369 21929466 -160485776 + MIR SINE MIR 56 136 -118 2072 122 3 0 chr6 21929466 21929777 -160485465 + AluSx SINE Alu 1 312 0 275 304 7 93 chr6 21929777 21929829 -160485413 + MIR SINE MIR 136 191 -63 181 263 0 35 chr6 21930087 21930144 -160485098 - L2 LINE L2 -70 3202 3148 244 369 0 27 chr6 21930164 21930275 -160484967 + MER5B DNA MER1_type 3 110 -68 295 234 202 0 chr6 21930494 21930588 -160484654 - L2 LINE L2 0 3313 3201 2027 101 7 13 chr6 21931247 21931554 -160483688 + AluSx SINE Alu 1 305 -7 246 241 18 116 chr6 21931846 21931958 -160483284 + 7SK RNA RNA 34 134 -59 1250 182 103 114 chr6 21932074 21932619 -160482623 - LTR8A LTR ERV1 -2 725 187 2326 69 3 10 chr6 21932670 21932973 -160482269 - AluY SINE Alu -10 301 1 292 196 76 65 chr6 21932994 21933086 -160482156 - LTR8 LTR ERV1 -598 93 1 2040 134 0 7 chr6 21933679 21933985 -160481257 - AluSx SINE Alu -8 304 1 1703 157 70 107 chr6 21934198 21934683 -160480559 - MLT1C LTR MaLR 0 467 1 2068 115 0 3 chr6 21934869 21935165 -160480077 + AluSg SINE Alu 1 295 -15 385 132 13 13 chr6 21935165 21935241 -160480001 + GA-rich Low_complexity Low_complexity 1 76 0 272 224 0 30 chr6 21935242 21935309 -160479933 + MIR SINE MIR 63 127 -81 2066 134 0 0 chr6 21935443 21935742 -160479500 - AluSq SINE Alu -14 299 1 2030 141 0 3 chr6 21936023 21936336 -160478906 - AluJb SINE Alu 0 312 1 629 299 90 43 chr6 21936568 21936913 -160478329 + LTR16C LTR ERVL 99 459 -32 651 301 125 24 chr6 21936974 21937309 -160477933 - MLT1K LTR MaLR -11 577 209 195 129 0 0 chr6 21937325 21937356 -160477886 + (TATG)n Simple_repeat Simple_repeat 2 32 0 454 153 0 38 chr6 21937690 21937821 -160477421 + (CA)n Simple_repeat Simple_repeat 2 127 0 223 265 0 0 chr6 21937851 21937900 -160477342 - L2 LINE L2 -1 3271 3223 2082 113 13 3 chr6 21937934 21938243 -160476999 + AluSx SINE Alu 1 312 0 1421 210 26 46 chr6 21938411 21938759 -160476483 - MER58B DNA MER1_type 0 341 1 1944 98 56 7 chr6 21938839 21939124 -160476118 - AluSg SINE Alu -11 299 1 386 324 57 39 chr6 21939321 21939602 -160475640 + L2 LINE L2 3028 3313 0 236 324 174 37 chr6 21939714 21939955 -160475287 - L2 LINE L2 -349 2965 2692 206 292 22 45 chr6 21940145 21940234 -160475008 - L2 LINE L2 -1018 2296 2210 930 179 29 43 chr6 21940234 21940441 -160474801 - MER3 DNA MER1_type -4 205 2 1250 144 40 36 chr6 21940489 21940739 -160474503 + L1MB4 LINE L1 5586 5836 -344 15519 125 17 21 chr6 21940739 21941290 -160473952 - Tigger1 DNA MER2_type 0 2418 1866 1649 57 40 31 chr6 21941290 21941518 -160473724 + MER30 DNA MER1_type 1 230 0 15519 125 17 21 chr6 21941518 21941664 -160473578 - Tigger1 DNA MER2_type -552 1866 1721 1379 210 0 22 chr6 21941664 21941983 -160473259 - AluJo SINE Alu 0 312 1 15519 125 17 21 chr6 21941983 21942106 -160473136 - Tigger1 DNA MER2_type -697 1721 1599 2320 72 7 0 chr6 21942106 21942413 -160472829 - AluY SINE Alu -2 309 1 15519 125 17 21 chr6 21942413 21944019 -160471223 - Tigger1 DNA MER2_type -819 1599 1 1727 164 42 12 chr6 21944020 21944355 -160470887 + L1MB4 LINE L1 5836 6180 0 764 153 8 16 chr6 21944857 21944981 -160470261 + FLAM_C SINE Alu 1 123 -10 2123 92 0 11 chr6 21944987 21945308 -160469934 + AluSc SINE Alu 1 318 0 2255 83 0 0 chr6 21945313 21945601 -160469641 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr6 21945608 21945633 -160469609 + AT_rich Low_complexity Low_complexity 1 25 0 2135 88 14 3 chr6 21946336 21946632 -160468610 + AluSx SINE Alu 2 300 -12 401 292 41 41 chr6 21946632 21946827 -160468415 + L1ME3A LINE L1 5967 6161 -9 265 276 92 10 chr6 21947097 21947195 -160468047 + MER5A DNA MER1_type 1 106 -83 221 143 0 20 chr6 21947812 21947861 -160467381 + (TA)n Simple_repeat Simple_repeat 1 48 0 511 296 45 17 chr6 21948064 21948240 -160467002 - MER5A DNA MER1_type -3 186 6 1593 154 7 37 chr6 21948332 21948630 -160466612 + AluJb SINE Alu 1 289 -23 1454 232 126 30 chr6 21948685 21949146 -160466096 - MLT1D LTR MaLR 0 505 1 273 289 117 23 chr6 21949543 21949671 -160465571 - MIR SINE MIR -3 259 120 2238 100 3 0 chr6 21949672 21949972 -160465270 - AluSx SINE Alu -11 301 1 978 103 0 0 chr6 21949972 21950108 -160465134 - AluSq/x SINE Alu -176 136 1 352 248 5 17 chr6 21950108 21950193 -160465049 - MIR SINE MIR -121 87 3 2140 109 0 0 chr6 21950791 21951084 -160464158 + AluSq SINE Alu 1 293 -20 25 0 0 0 chr6 21952305 21952330 -160462912 + GC_rich Low_complexity Low_complexity 1 25 0 231 36 0 0 chr6 21953152 21953180 -160462062 + (CCG)n Simple_repeat Simple_repeat 2 29 0 213 39 0 0 chr6 21953382 21953408 -160461834 + (CGG)n Simple_repeat Simple_repeat 3 28 0 213 217 0 65 chr6 21954143 21954235 -160461007 + (CCCCG)n Simple_repeat Simple_repeat 4 89 0 308 299 5 5 chr6 21954445 21954582 -160460660 + C-rich Low_complexity Low_complexity 1 137 0 1317 61 6 0 chr6 21956133 21956298 -160458944 - AluSg/x SINE Alu -10 302 137 2221 77 0 0 chr6 21956331 21956616 -160458626 + AluSc SINE Alu 1 285 -24 653 268 26 16 chr6 21957011 21957205 -160458037 + MIR SINE MIR 66 261 -1 21 36 0 0 chr6 21959308 21959336 -160455906 + AT_rich Low_complexity Low_complexity 1 28 0 541 274 17 29 chr6 21959713 21959888 -160455354 - MIR3 SINE MIR -3 205 33 923 203 41 0 chr6 21961127 21961324 -160453918 + MIR SINE MIR 33 237 -25 1981 130 0 10 chr6 21961402 21961710 -160453532 - AluSx SINE Alu -7 305 1 225 320 40 48 chr6 21962762 21962887 -160452355 - L2 LINE L2 -17 3296 3173 435 178 147 80 chr6 21963033 21963196 -160452046 + MER5B DNA MER1_type 5 178 0 471 303 119 34 chr6 21963378 21963672 -160451570 - MER102b DNA MER1_type -22 319 1 752 281 54 9 chr6 21963683 21963907 -160451335 - MIR SINE MIR 0 262 29 195 282 127 14 chr6 21963995 21964066 -160451176 - MER5A DNA MER1_type 0 189 111 * 244 257 43 14 chr6 21964017 21964087 -160451155 + MER5A DNA MER1_type 43 114 -75 221 291 205 0 chr6 21965659 21965776 -160449466 + MIR SINE MIR 64 204 -58 841 163 62 12 chr6 21966212 21966372 -160448870 - MER20 DNA MER1_type -51 168 1 22 56 0 0 chr6 21966433 21966469 -160448773 + AT_rich Low_complexity Low_complexity 1 36 0 567 288 88 3 chr6 21966752 21966933 -160448309 + MIR SINE MIR 50 242 -20 510 292 8 15 chr6 21967112 21967242 -160448000 - L2 LINE L2 -3 3310 3182 652 208 67 67 chr6 21967304 21967482 -160447760 + MER5A DNA MER1_type 2 179 -10 24 67 0 0 chr6 21968296 21968341 -160446901 + AT_rich Low_complexity Low_complexity 1 45 0 31 0 0 0 chr6 21969669 21969700 -160445542 + AT_rich Low_complexity Low_complexity 1 31 0 834 285 66 45 chr6 21969756 21970286 -160444956 - L1ME4a LINE L1 -104 6017 5477 1874 133 3 11 chr6 21970318 21970654 -160444588 - AluSx SINE Alu 0 334 1 1295 169 0 0 chr6 21970656 21970869 -160444373 - AluJb SINE Alu -14 298 86 548 287 27 5 chr6 21970939 21971127 -160444115 - MIR SINE MIR -2 260 69 234 0 0 0 chr6 21971227 21971253 -160443989 + (TG)n Simple_repeat Simple_repeat 2 27 0 14803 135 25 12 chr6 21971263 21972475 -160442767 - Tigger1 DNA MER2_type 0 2418 1223 1706 55 0 0 chr6 21972475 21972676 -160442566 - 7SLRNA srpRNA srpRNA -119 201 1 14803 135 25 12 chr6 21972676 21973825 -160441417 - Tigger1 DNA MER2_type -1195 1223 27 1916 165 58 3 chr6 21973921 21974248 -160440994 - MER7A DNA MER2_type -2 344 2 2296 86 0 3 chr6 21974267 21974557 -160440685 - AluSg SINE Alu -21 289 1 2381 76 0 3 chr6 21974567 21974858 -160440384 - AluSq SINE Alu -23 290 1 360 0 0 0 chr6 21974999 21975039 -160440203 + (TG)n Simple_repeat Simple_repeat 2 41 0 254 196 0 0 chr6 21975168 21975219 -160440023 + MER4-int LTR ERV1 1112 1162 -5436 305 267 35 69 chr6 21975239 21975441 -160439801 - L1ME4a LINE L1 -1306 4840 4646 491 264 88 26 chr6 21975534 21975727 -160439515 - MIR SINE MIR -49 213 9 2345 84 0 29 chr6 21976176 21976486 -160438756 - AluSx SINE Alu -11 301 1 302 213 160 21 chr6 21978272 21978366 -160436876 + MIR3 SINE MIR 93 199 -9 215 229 215 97 chr6 21978912 21979002 -160436240 + MIR SINE MIR 14 92 -170 2334 113 3 0 chr6 21979002 21979311 -160435931 - AluSx SINE Alu -2 310 1 215 229 215 97 chr6 21979311 21979364 -160435878 + MIR SINE MIR 92 174 -88 1448 168 0 5 chr6 21979740 21979960 -160435282 + MER20 DNA MER1_type 1 219 0 941 166 155 10 chr6 21980050 21980243 -160434999 + Tigger7 DNA MER2_type 9 229 -476 620 154 19 0 chr6 21980259 21980363 -160434879 + Tigger7 DNA MER2_type 2382 2487 0 33 0 0 0 chr6 21980671 21980704 -160434538 + AT_rich Low_complexity Low_complexity 1 33 0 1001 153 21 26 chr6 21980923 21981113 -160434129 - MER53 DNA DNA 0 189 1 1783 139 0 0 chr6 21981575 21981833 -160433409 + AluSx SINE Alu 45 302 -10 386 227 72 0 chr6 21982483 21982580 -160432662 + LTR16C LTR ERVL 388 491 0 1549 175 118 3 chr6 21982588 21982919 -160432323 - MLT1B LTR MaLR -3 387 19 180 302 19 0 chr6 21983376 21983429 -160431813 + MIR3 SINE MIR 146 199 -9 467 265 141 14 chr6 21983630 21983916 -160431326 + L2 LINE L2 2909 3312 -1 1986 160 19 43 chr6 21984211 21984629 -160430613 + Charlie4a DNA MER1_type 85 492 -16 609 141 33 0 chr6 21985973 21986065 -160429177 - AluJ/FLAM SINE Alu -216 96 2 2453 81 0 0 chr6 21986259 21986557 -160428685 + AluSc SINE Alu 1 298 -11 2401 108 0 0 chr6 21986763 21987069 -160428173 - AluSx SINE Alu -6 306 1 1446 149 27 0 chr6 21987140 21987241 -160428001 + MER30 DNA MER1_type 3 100 -130 243 0 0 0 chr6 21987241 21987268 -160427974 + (CA)n Simple_repeat Simple_repeat 2 28 0 1446 149 27 0 chr6 21987268 21987388 -160427854 + MER30 DNA MER1_type 100 230 0 1626 175 3 37 chr6 21987626 21987923 -160427319 + AluJo SINE Alu 1 287 -25 311 274 116 41 chr6 21988556 21988702 -160426540 - MIR3 SINE MIR -30 178 22 281 268 131 65 chr6 21988830 21988998 -160426244 + MIR SINE MIR 7 185 -77 1721 141 40 24 chr6 21990319 21990616 -160424626 - AluJo SINE Alu -10 302 1 3368 150 27 41 chr6 21991807 21992362 -160422880 - L1MB4 LINE L1 -25 6155 5609 1743 139 54 31 chr6 21992362 21992656 -160422586 - AluSx SINE Alu -11 301 1 3368 150 27 41 chr6 21992656 21992740 -160422502 - L1MB4 LINE L1 -571 5609 5525 2183 95 10 3 chr6 21993475 21993769 -160421473 + AluSq SINE Alu 1 296 -17 1032 171 34 6 chr6 21994246 21994421 -160420821 + AluJo SINE Alu 1 180 -132 1558 170 83 0 chr6 21994718 21994994 -160420248 + AluJb SINE Alu 1 299 -13 284 215 63 13 chr6 21995726 21995805 -160419437 + L2 LINE L2 3226 3308 -5 1932 81 12 4 chr6 21996027 21996286 -160418956 - AluSg SINE Alu -9 301 41 2945 156 117 9 chr6 21996446 21996992 -160418250 - MER6A DNA MER2_type 0 605 1 1939 120 7 30 chr6 21997354 21997655 -160417587 - AluSx SINE Alu -18 294 1 228 67 0 0 chr6 21998128 21998158 -160417084 + (GA)n Simple_repeat Simple_repeat 1 30 0 495 237 8 15 chr6 21998634 21998765 -160416477 - MIR3 SINE MIR -26 182 53 605 210 89 25 chr6 22000249 22000406 -160414836 - L1MC/D LINE L1 -2075 5733 5567 6702 119 13 7 chr6 22000406 22003121 -160412121 - L1PA13 LINE L1 -4 6159 3374 612 152 20 0 chr6 22003163 22003262 -160411980 - U6 snRNA snRNA -6 101 1 543 258 56 76 chr6 22003306 22003456 -160411786 - L1MC/D LINE L1 -832 5314 5163 2251 88 0 20 chr6 22003456 22003753 -160411489 + AluSc SINE Alu 1 291 -18 543 258 56 76 chr6 22003753 22003780 -160411462 - L1MC/D LINE L1 -983 5163 5137 279 0 0 0 chr6 22003780 22003811 -160411431 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 543 258 56 76 chr6 22003811 22004191 -160411051 - L1MC/D LINE L1 -1009 5137 4956 1786 170 20 0 chr6 22004191 22004497 -160410745 - AluJo SINE Alu 0 312 1 543 258 56 76 chr6 22004497 22004578 -160410664 - L1MC/D LINE L1 -1190 4956 4875 756 189 67 33 chr6 22004933 22005113 -160410129 + MER5A DNA MER1_type 1 186 -3 514 282 17 23 chr6 22005652 22005826 -160409416 + MER5B DNA MER1_type 1 173 -5 220 194 177 32 chr6 22007012 22007074 -160408168 - MIR3 SINE MIR -49 159 89 21 0 0 0 chr6 22007100 22007121 -160408121 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 22007490 22007517 -160407725 + AT_rich Low_complexity Low_complexity 1 27 0 1747 157 6 45 chr6 22007963 22008275 -160406967 - AluSx SINE Alu -12 300 1 2040 105 7 33 chr6 22009770 22010076 -160405166 + AluSx SINE Alu 1 298 -14 1793 134 31 0 chr6 22010477 22010738 -160404504 + AluJb SINE Alu 29 297 -15 422 278 18 100 chr6 22011280 22011502 -160403740 - L1ME LINE L1 -313 5808 5612 2432 100 0 0 chr6 22011502 22011813 -160403429 + AluSx SINE Alu 1 311 -1 422 278 18 100 chr6 22011813 22011871 -160403371 - L1ME LINE L1 -509 5612 5551 2209 77 0 4 chr6 22012000 22012274 -160402968 + AluY SINE Alu 1 273 -38 249 293 111 13 chr6 22012702 22012927 -160402315 - L1P4 LINE L1 -665 5501 5255 249 298 147 0 chr6 22013041 22013232 -160402010 - L1ME LINE L1 -1155 4991 4773 2240 119 0 0 chr6 22013244 22013546 -160401696 - AluSx SINE Alu -10 302 1 1487 147 14 142 chr6 22013615 22014011 -160401231 - AluJo SINE Alu 0 352 1 771 195 0 0 chr6 22014056 22014179 -160401063 + FLAM_C SINE Alu 2 124 -19 742 222 49 15 chr6 22014203 22014406 -160400836 - L1MEc LINE L1 -4582 1814 1605 3190 154 47 25 chr6 22014456 22015008 -160400234 - MER21B LTR ERV1 -52 811 248 1383 152 124 56 chr6 22015009 22015331 -160399911 - MER21B-int LTR ERV1 -1783 2408 2065 1320 192 46 46 chr6 22015319 22015621 -160399621 - MER21B-int LTR ERV1 -2242 1949 1648 * 767 211 7 0 chr6 22015674 22015821 -160399421 - MER21B-int LTR ERV1 -2076 4682 4535 1486 227 28 25 chr6 22015900 22016253 -160398989 - MER21B-int LTR ERV1 -2554 1637 1284 5473 68 84 42 chr6 22016255 22016923 -160398319 - L1PB1 LINE L1 0 6151 5440 1973 137 0 0 chr6 22016923 22017200 -160398042 - AluSx SINE Alu -34 278 2 5473 68 84 42 chr6 22017200 22017367 -160397875 - L1PB1 LINE L1 -711 5440 5281 1676 265 32 47 chr6 22017367 22017471 -160397771 - MER21B-int LTR ERV1 -2897 1294 1190 2211 101 0 0 chr6 22017471 22017768 -160397474 - AluSg1 SINE Alu -12 297 1 1676 265 32 47 chr6 22017768 22018169 -160397073 - MER21B-int LTR ERV1 -3001 1190 797 3314 170 33 41 chr6 22018169 22018810 -160396432 - MER21B-int LTR ERV1 -3555 636 1 4049 170 36 10 chr6 22018870 22019565 -160395677 - MER21B LTR ERV1 -65 798 86 283 309 0 12 chr6 22019599 22019680 -160395562 - LTR67 LTR ERVL -476 81 2 723 252 100 41 chr6 22019705 22020194 -160395048 + HAL1 LINE L1 1812 2372 -135 185 268 0 18 chr6 22020488 22020544 -160394698 - L2 LINE L2 -667 2647 2593 254 133 67 0 chr6 22021140 22021185 -160394057 + L2 LINE L2 3262 3309 -4 293 244 30 60 chr6 22021764 22021932 -160393310 - L1ME4a LINE L1 -4 6117 5955 2223 101 10 0 chr6 22022089 22022387 -160392855 + AluSq SINE Alu 1 301 -12 292 250 8 52 chr6 22022544 22022670 -160392572 - L1ME4a LINE L1 -34 6036 1204 408 20 0 0 chr6 22022814 22022863 -160392379 + (CA)n Simple_repeat Simple_repeat 2 50 0 1475 192 75 0 chr6 22023194 22023475 -160391767 + AluJo SINE Alu 2 303 -9 205 229 241 0 chr6 22023483 22023566 -160391676 + MIR SINE MIR 66 168 -94 431 309 39 11 chr6 22024117 22024298 -160390944 + MIR SINE MIR 73 258 -4 338 321 58 14 chr6 22024345 22024648 -160390594 - MLT1K LTR MaLR -37 551 199 701 166 0 65 chr6 22024886 22025025 -160390217 - FLAM_A SINE Alu -3 130 1 1685 149 87 4 chr6 22026306 22026581 -160388661 - AluSx SINE Alu -14 298 1 2381 75 0 7 chr6 22026878 22027173 -160388069 + AluY SINE Alu 1 293 -18 529 270 41 63 chr6 22027177 22027530 -160387712 - MLT1K LTR MaLR -55 533 151 1053 126 69 82 chr6 22027824 22027927 -160387315 - Tigger2a DNA MER2_type -2278 430 327 497 174 124 25 chr6 22027927 22028048 -160387194 - FLAM_C SINE Alu 0 133 1 1053 126 69 82 chr6 22028048 22028175 -160387067 - Tigger2a DNA MER2_type -2381 327 203 516 219 70 0 chr6 22028331 22028445 -160386797 - MER5A DNA MER1_type -6 183 62 1113 121 17 116 chr6 22028514 22028698 -160386544 - Tigger2a DNA MER2_type -2499 209 51 1852 149 0 23 chr6 22028698 22029000 -160386242 + AluJb SINE Alu 1 295 -17 1113 121 17 116 chr6 22029000 22029047 -160386195 - Tigger2a DNA MER2_type -2657 51 1 619 170 222 0 chr6 22029056 22029209 -160386033 - MER33 DNA MER1_type -137 187 1 2202 105 3 7 chr6 22029315 22029610 -160385632 + AluSx SINE Alu 1 294 -18 241 241 69 0 chr6 22030074 22030132 -160385110 - L2 LINE L2 -42 3230 3169 192 175 25 0 chr6 22031662 22031702 -160383540 - L2 LINE L2 -1 3312 3272 238 273 0 0 chr6 22032308 22032363 -160382879 + CT-rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr6 22033123 22033152 -160382090 + AT_rich Low_complexity Low_complexity 1 29 0 201 74 0 0 chr6 22033388 22033415 -160381827 + (TA)n Simple_repeat Simple_repeat 1 27 0 267 133 0 0 chr6 22033826 22033871 -160381371 + (TG)n Simple_repeat Simple_repeat 2 46 0 298 57 0 0 chr6 22035203 22035238 -160380004 - U2 snRNA snRNA -153 35 1 1214 126 0 0 chr6 22035594 22035761 -160379481 + AluSg/x SINE Alu 134 300 -10 2039 127 3 7 chr6 22036084 22036383 -160378859 + AluSx SINE Alu 1 298 -14 2504 42 0 0 chr6 22037073 22037360 -160377882 - AluY SINE Alu -24 287 1 1022 196 4 71 chr6 22038504 22038744 -160376498 - MER58A DNA MER1_type 0 224 1 2262 79 4 0 chr6 22039503 22039806 -160375436 + AluSc SINE Alu 2 305 0 975 122 20 0 chr6 22040125 22040272 -160374970 + FAM SINE Alu 20 169 -16 1785 159 36 0 chr6 22040481 22040758 -160374484 + AluJo SINE Alu 1 287 -25 24 32 0 0 chr6 22041363 22041394 -160373848 + AT_rich Low_complexity Low_complexity 1 31 0 196 281 18 0 chr6 22042864 22042921 -160372321 + L2 LINE L2 3252 3309 -4 196 115 0 58 chr6 22043996 22044048 -160371194 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 2398 90 6 6 chr6 22044574 22044886 -160370356 - AluSx SINE Alu 0 312 1 358 261 67 25 chr6 22045173 22045292 -160369950 - L3 LINE CR1 -547 1030 907 335 180 22 22 chr6 22045390 22045479 -160369763 - L1ME4a LINE L1 -105 6016 5928 2317 106 3 0 chr6 22045479 22045790 -160369452 - AluSx SINE Alu 0 312 1 1620 162 0 24 chr6 22045802 22046099 -160369143 - AluJo SINE Alu 0 312 23 2179 118 3 0 chr6 22046256 22046552 -160368690 - AluSx SINE Alu -15 297 1 978 218 105 16 chr6 22046673 22046930 -160368312 - L1MB5 LINE L1 -10 6164 5885 1749 107 21 0 chr6 22046930 22047172 -160368070 - AluSx SINE Alu -6 306 60 1963 115 23 36 chr6 22047215 22047519 -160367723 + AluSx SINE Alu 1 300 -12 2431 80 0 7 chr6 22047519 22047819 -160367423 + AluSc SINE Alu 1 298 -11 284 159 0 16 chr6 22047940 22048003 -160367239 + GA-rich Low_complexity Low_complexity 4 65 0 192 267 0 0 chr6 22048122 22048167 -160367075 - L2 LINE L2 -22 3291 3247 360 0 0 0 chr6 22050194 22050234 -160365008 + (TG)n Simple_repeat Simple_repeat 2 41 0 1665 109 0 0 chr6 22050699 22050919 -160364323 - AluSx SINE Alu -75 237 18 1955 135 27 80 chr6 22050919 22050964 -160364278 + L1MB1 LINE L1 5788 5834 -334 716 101 0 0 chr6 22050964 22051063 -160364179 + HY3 scRNA scRNA 2 100 -1 1955 135 27 80 chr6 22051063 22051418 -160363824 + L1MB1 LINE L1 5834 6167 -1 9956 230 49 21 chr6 22051423 22051634 -160363608 + L1M4 LINE L1 2269 2473 -3673 2368 70 3 10 chr6 22051634 22051934 -160363308 + AluY SINE Alu 1 298 -13 9956 230 49 21 chr6 22051934 22052046 -160363196 + L1M4 LINE L1 2473 2580 -3566 2347 104 0 3 chr6 22052046 22052354 -160362888 + AluSx SINE Alu 1 307 -5 9956 230 49 21 chr6 22052354 22053977 -160361265 + L1M4 LINE L1 2580 4156 -1990 2178 91 54 7 chr6 22053977 22054273 -160360969 + AluY SINE Alu 1 310 -1 9956 230 49 21 chr6 22054273 22054438 -160360804 + L1M4 LINE L1 4156 4315 -1831 2434 95 0 0 chr6 22054438 22054742 -160360500 + AluSx SINE Alu 1 304 -8 9956 230 49 21 chr6 22054742 22055425 -160359817 + L1M4 LINE L1 4315 5144 -1002 26 30 0 0 chr6 22055545 22055578 -160359664 + AT_rich Low_complexity Low_complexity 1 33 0 1378 165 0 0 chr6 22055809 22056021 -160359221 + AluSx SINE Alu 1 212 -100 455 69 0 0 chr6 22056021 22056079 -160359163 + AluSq/x SINE Alu 78 135 -177 1879 157 23 0 chr6 22056079 22056384 -160358858 + AluSx SINE Alu 1 312 0 2143 128 7 0 chr6 22057382 22057679 -160357563 - AluSx SINE Alu -13 299 1 2177 109 3 0 chr6 22057924 22058248 -160356994 - AluSq SINE Alu 0 325 1 1358 209 50 26 chr6 22059128 22059423 -160355819 + MLT2D LTR ERVL 68 373 -41 305 24 24 0 chr6 22059423 22059465 -160355777 + (CA)n Simple_repeat Simple_repeat 1 43 0 1358 209 50 26 chr6 22059465 22059508 -160355734 + MLT2D LTR ERVL 373 414 0 1731 140 16 51 chr6 22059571 22059886 -160355356 + AluJo SINE Alu 1 304 -8 404 236 112 39 chr6 22060093 22060271 -160354971 + MLT1K LTR MaLR 395 585 -3 216 0 0 0 chr6 22060323 22060347 -160354895 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 559 165 21 0 chr6 22060479 22060576 -160354666 + MER53 DNA DNA 3 101 -88 1679 113 36 0 chr6 22060739 22060961 -160354281 + AluSx SINE Alu 1 230 -82 615 341 46 0 chr6 22061006 22061290 -160353952 - L2 LINE L2 -574 2740 2444 1587 175 7 24 chr6 22061421 22061713 -160353529 + AluJo SINE Alu 1 287 -25 2496 94 0 0 chr6 22061741 22062049 -160353193 + AluSg SINE Alu 1 308 -2 26 64 0 0 chr6 22062098 22062145 -160353097 + AT_rich Low_complexity Low_complexity 1 47 0 1691 153 52 8 chr6 22062169 22062437 -160352805 - AluJb SINE Alu -22 290 11 345 203 0 0 chr6 22062447 22062516 -160352726 - MIR SINE MIR -110 152 84 2263 175 15 111 chr6 22062584 22063112 -160352130 - MLT1F LTR MaLR -10 532 64 2255 99 3 3 chr6 22063112 22063414 -160351828 + AluY SINE Alu 1 302 -9 2263 175 15 111 chr6 22063414 22063473 -160351769 - MLT1F LTR MaLR -478 64 1 273 281 154 41 chr6 22063743 22063964 -160351278 + L2 LINE L2 2813 3058 -255 2194 113 0 23 chr6 22064214 22064523 -160350719 + AluSx SINE Alu 1 302 -10 26 0 0 0 chr6 22064604 22064630 -160350612 + AT_rich Low_complexity Low_complexity 1 26 0 768 287 26 0 chr6 22064705 22064900 -160350342 + MER63A DNA MER1_type 7 206 -4 1079 164 0 0 chr6 22065275 22065440 -160349802 + FAM SINE Alu 1 165 -10 184 262 0 0 chr6 22065449 22065491 -160349751 - MIR SINE MIR -81 127 86 2237 132 0 6 chr6 22065493 22065804 -160349438 - AluSx SINE Alu -3 309 1 2374 83 0 3 chr6 22065828 22066129 -160349113 - AluY SINE Alu -11 300 1 1780 137 49 7 chr6 22066430 22066714 -160348528 - AluJo SINE Alu -16 296 1 360 299 63 124 chr6 22066909 22066998 -160348244 + MLT1K LTR MaLR 27 120 -468 2187 121 10 0 chr6 22066998 22067296 -160347946 - AluSx SINE Alu -11 301 1 360 299 63 124 chr6 22067296 22067352 -160347890 + MLT1K LTR MaLR 120 178 -410 322 167 0 0 chr6 22067352 22067406 -160347836 + L1MB7 LINE L1 6131 6184 0 360 299 63 124 chr6 22067406 22067607 -160347635 + MLT1K LTR MaLR 178 353 -235 811 212 141 97 chr6 22067704 22068209 -160347033 - MER34B LTR ERV1 0 565 39 1131 159 221 0 chr6 22068227 22068475 -160346767 + AluJo SINE Alu 9 306 0 274 109 19 28 chr6 22068488 22068542 -160346700 - MER34C LTR ERV1 -502 83 1 1983 144 3 7 chr6 22068673 22068972 -160346270 + AluSx SINE Alu 1 298 -14 2304 116 0 3 chr6 22069066 22069377 -160345865 + AluSx SINE Alu 1 310 -2 2367 100 3 0 chr6 22069649 22069950 -160345292 - AluSp SINE Alu -10 303 2 2097 116 0 0 chr6 22070387 22070671 -160344571 + AluSx SINE Alu 1 284 -28 974 189 6 0 chr6 22070704 22070873 -160344369 + AluJb SINE Alu 137 306 -6 33 0 0 0 chr6 22071155 22071188 -160344054 + AT_rich Low_complexity Low_complexity 1 33 0 468 121 0 0 chr6 22071189 22071272 -160343970 - L1MB4 LINE L1 0 6180 6098 2253 101 0 3 chr6 22071272 22071570 -160343672 - AluSx SINE Alu -15 297 1 27 0 0 0 chr6 22071618 22071645 -160343597 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 22071666 22071694 -160343548 + AT_rich Low_complexity Low_complexity 1 28 0 4185 131 17 27 chr6 22071694 22071935 -160343307 - L1MA4 LINE L1 -11 6289 6047 1980 146 0 20 chr6 22071935 22072236 -160343006 - AluSx SINE Alu -17 295 1 4185 131 17 27 chr6 22072236 22072743 -160342499 - L1MA4 LINE L1 -253 6047 5548 1737 146 3 51 chr6 22073267 22073582 -160341660 - AluJb SINE Alu -12 300 1 202 188 43 43 chr6 22073900 22073969 -160341273 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 2418 92 0 9 chr6 22075319 22075635 -160339607 - AluSq SINE Alu 0 313 1 488 195 30 67 chr6 22075781 22075851 -160339391 + L1MD3 LINE L1 7828 7899 -96 5129 65 5 0 chr6 22075851 22076508 -160338734 + L1PA6 LINE L1 5495 6154 0 488 195 30 67 chr6 22076508 22076601 -160338641 + L1MD3 LINE L1 7899 7985 -10 1130 268 194 35 chr6 22076608 22077093 -160338149 + L2 LINE L2 2329 2890 -424 1427 135 0 5 chr6 22077096 22077303 -160337939 - AluJo SINE Alu -24 288 83 884 283 62 64 chr6 22077309 22077621 -160337621 + L2 LINE L2 2891 3203 -110 2391 85 10 0 chr6 22077621 22077928 -160337314 - AluSg SINE Alu 0 310 1 884 283 62 64 chr6 22077928 22078021 -160337221 + L2 LINE L2 3203 3295 -18 704 207 16 96 chr6 22078193 22078406 -160336836 - MLT1K LTR MaLR -4 584 392 2405 87 0 0 chr6 22078406 22078705 -160336537 + AluY SINE Alu 1 299 -12 704 207 16 96 chr6 22078705 22078742 -160336500 - MLT1K LTR MaLR -196 392 354 1693 172 10 10 chr6 22078987 22079283 -160335959 + AluJb SINE Alu 11 306 -6 1036 90 0 0 chr6 22079602 22079736 -160335506 + AluSq/x SINE Alu 1 134 -178 2122 115 0 16 chr6 22079737 22080042 -160335200 + AluSx SINE Alu 1 300 -12 1197 123 0 0 chr6 22080351 22080514 -160334728 + AluSx SINE Alu 1 163 -149 24 0 0 0 chr6 22080569 22080593 -160334649 + AT_rich Low_complexity Low_complexity 1 24 0 1621 178 7 7 chr6 22080786 22081073 -160334169 + AluJo SINE Alu 1 287 -25 1635 174 45 3 chr6 22081111 22081399 -160333843 - AluJb SINE Alu -12 300 1 2280 101 0 0 chr6 22081539 22081835 -160333407 - AluSg SINE Alu -14 296 1 2263 105 0 0 chr6 22082288 22082584 -160332658 - AluY SINE Alu -15 296 1 2302 102 3 7 chr6 22082584 22082889 -160332353 - AluSq SINE Alu -7 306 3 278 277 17 25 chr6 22082912 22083031 -160332211 - L1MC/D LINE L1 -2016 5792 5675 291 253 111 10 chr6 22083069 22083168 -160332074 - L1MC/D LINE L1 -2090 5718 5610 190 330 113 22 chr6 22083221 22083406 -160331836 + L2 LINE L2 2442 2643 -671 243 0 0 0 chr6 22083868 22083895 -160331347 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1112 169 0 0 chr6 22084007 22084184 -160331058 + AluJb SINE Alu 132 308 -4 663 139 0 26 chr6 22084294 22084409 -160330833 - FLAM_A SINE Alu -1 141 30 418 291 145 9 chr6 22084860 22085087 -160330155 + MIR SINE MIR 3 260 -2 329 327 90 41 chr6 22086310 22086576 -160328666 + L2 LINE L2 1908 2186 -1128 778 130 48 0 chr6 22086580 22086726 -160328516 - L1M4 LINE L1 -670 5514 5362 1475 159 31 38 chr6 22086733 22087022 -160328220 - AluJb SINE Alu -25 287 1 1082 200 4 36 chr6 22087045 22087320 -160327922 - L1M4 LINE L1 -1010 5136 4871 565 254 57 0 chr6 22087375 22087497 -160327745 - MER5A DNA MER1_type 0 189 61 604 146 146 24 chr6 22087497 22087620 -160327622 + FLAM_C SINE Alu 1 138 -5 354 197 15 0 chr6 22087624 22087690 -160327552 - MER5A DNA MER1_type -122 67 1 372 244 89 41 chr6 22087692 22087815 -160327427 - MER5B DNA MER1_type 0 178 50 697 62 0 0 chr6 22087816 22087912 -160327330 - AluY SINE Alu 0 311 216 247 263 0 0 chr6 22087918 22087975 -160327267 - MER5B DNA MER1_type -120 58 2 280 367 86 8 chr6 22087986 22088114 -160327128 - MER5B DNA MER1_type -2 176 39 2439 78 3 7 chr6 22088114 22088420 -160326822 + AluSq SINE Alu 2 306 -7 340 260 67 0 chr6 22088804 22088908 -160326334 - L1MC/D LINE L1 -2150 5658 5548 185 324 261 18 chr6 22089166 22089277 -160325965 + MIR SINE MIR 16 153 -55 220 338 0 50 chr6 22089518 22089598 -160325644 - L3 LINE CR1 -7 1570 1495 940 262 101 42 chr6 22089639 22090025 -160325217 - L2 LINE L2 -1 3312 2904 2401 255 144 31 chr6 22090071 22090866 -160324376 - L2 LINE L2 -15 3298 2594 2257 105 0 3 chr6 22090866 22091161 -160324081 - AluSg SINE Alu -16 294 1 2401 255 144 31 chr6 22091161 22091247 -160323995 - L2 LINE L2 -719 2594 2519 2184 114 0 3 chr6 22091247 22091544 -160323698 - AluSq SINE Alu -17 296 1 2401 255 144 31 chr6 22091544 22091834 -160323408 - L2 LINE L2 -794 2519 2011 266 159 261 0 chr6 22091837 22091925 -160323317 + MER103 DNA DNA 55 165 -1 925 282 111 24 chr6 22092013 22092435 -160322807 - MLT1K LTR MaLR -4 584 126 2362 82 3 0 chr6 22092454 22092747 -160322495 - AluSp SINE Alu -18 295 2 460 234 57 14 chr6 22093183 22093324 -160321918 + MIR SINE MIR 89 235 -27 4329 162 54 7 chr6 22093382 22094236 -160321006 - L1MD1 LINE L1 -11 6625 5732 2217 203 44 50 chr6 22094263 22094521 -160320721 - L1MD1 LINE L1 -885 5655 5397 2293 112 0 3 chr6 22094521 22094826 -160320416 - AluSx SINE Alu -8 304 1 2217 203 44 50 chr6 22094826 22095104 -160320138 - L1MD1 LINE L1 -1143 5397 5121 2635 33 3 0 chr6 22095104 22095410 -160319832 + AluY SINE Alu 1 307 -4 2217 203 44 50 chr6 22095410 22095573 -160319669 - L1MD1 LINE L1 -1419 5121 4959 1464 221 183 16 chr6 22095570 22095754 -160319488 - L1MD1 LINE L1 -5942 598 446 * 282 29 0 0 chr6 22095754 22095789 -160319453 + (TG)n Simple_repeat Simple_repeat 2 36 0 1464 221 183 16 chr6 22095789 22096096 -160319146 - L1MD1 LINE L1 -6094 446 25 21 36 0 0 chr6 22096114 22096142 -160319100 + AT_rich Low_complexity Low_complexity 1 28 0 1947 135 21 0 chr6 22096227 22096509 -160318733 - AluSx SINE Alu -14 298 11 260 171 0 0 chr6 22096509 22096550 -160318692 - Alu SINE Alu -262 41 1 525 267 65 75 chr6 22096571 22097080 -160318162 - L1MC5 LINE L1 -186 7775 7272 2253 110 0 0 chr6 22097341 22097642 -160317600 - AluSx SINE Alu -11 301 1 1281 146 39 26 chr6 22097745 22097978 -160317264 - MER46A DNA MER2_type 0 236 1 1788 164 7 3 chr6 22099048 22099335 -160315907 + AluJb SINE Alu 9 296 -16 21 36 0 0 chr6 22099505 22099533 -160315709 + AT_rich Low_complexity Low_complexity 1 28 0 3799 214 65 48 chr6 22099662 22100369 -160314873 - L1MC4a LINE L1 0 7808 7114 2039 117 7 0 chr6 22100369 22100695 -160314547 - AluSx SINE Alu 0 328 1 3799 214 65 48 chr6 22100695 22100774 -160314468 - L1MC4a LINE L1 -694 7114 7038 2128 113 7 3 chr6 22100774 22101066 -160314176 - AluSx SINE Alu -19 293 1 3799 214 65 48 chr6 22101066 22101456 -160313786 - L1MC4a LINE L1 -770 7038 6611 255 298 124 50 chr6 22101531 22101649 -160313593 - MIR SINE MIR -18 244 109 2366 86 3 0 chr6 22101649 22101953 -160313289 - AluY SINE Alu -6 305 1 255 298 124 50 chr6 22101953 22101995 -160313247 - MIR SINE MIR -153 109 72 2390 70 0 10 chr6 22102159 22102458 -160312784 - AluY SINE Alu -15 296 1 182 33 67 0 chr6 22102669 22102699 -160312543 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 622 155 10 10 chr6 22102701 22102804 -160312438 - FLAM_A SINE Alu -27 115 13 1547 158 13 49 chr6 22102842 22103146 -160312096 + AluJb SINE Alu 1 293 -19 23 54 0 0 chr6 22103204 22103241 -160312001 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 22103446 22103483 -160311759 + AT_rich Low_complexity Low_complexity 1 37 0 2254 107 3 0 chr6 22104016 22104314 -160310928 + AluSx SINE Alu 1 299 -13 1855 156 0 3 chr6 22104411 22104700 -160310542 - AluSx SINE Alu -24 288 1 1441 139 10 0 chr6 22104704 22104906 -160310336 - AluSx SINE Alu -108 204 1 411 310 0 23 chr6 22105172 22105346 -160309896 - MARNA DNA Mariner -165 421 252 268 193 53 0 chr6 22105501 22105558 -160309684 + MARNA DNA Mariner 456 515 -71 2217 129 0 0 chr6 22106097 22106407 -160308835 - AluSg SINE Alu 0 310 1 2493 61 0 0 chr6 22106414 22106710 -160308532 - AluY SINE Alu -15 296 1 2047 136 0 0 chr6 22106871 22107165 -160308077 + AluSq SINE Alu 1 294 -19 2208 84 0 17 chr6 22107544 22107905 -160307337 + AluY SINE Alu 1 356 0 246 156 0 0 chr6 22108328 22108373 -160306869 + (TA)n Simple_repeat Simple_repeat 2 46 0 2102 105 0 14 chr6 22108433 22108757 -160306485 + AluSx SINE Alu 1 320 0 706 93 0 0 chr6 22109620 22109717 -160305525 - AluJ/FLAM SINE Alu -215 97 1 22 35 0 0 chr6 22110516 22110545 -160304697 + AT_rich Low_complexity Low_complexity 1 29 0 2403 90 7 0 chr6 22111948 22112258 -160302984 + AluSx SINE Alu 1 312 0 374 266 252 7 chr6 22112289 22112428 -160302814 + MIR SINE MIR 37 209 -53 1943 135 38 10 chr6 22113256 22113545 -160301697 + AluSx SINE Alu 1 297 -15 699 218 0 0 chr6 22114301 22114434 -160300808 - FLAM_A SINE Alu 0 133 1 233 287 93 39 chr6 22114755 22114884 -160300358 + MIR SINE MIR 63 198 -64 582 219 0 0 chr6 22114931 22115036 -160300206 + FLAM_A SINE Alu 18 122 -20 23 0 0 0 chr6 22115928 22115951 -160299291 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 22117269 22117297 -160297945 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 22117644 22117672 -160297570 + AT_rich Low_complexity Low_complexity 1 28 0 552 104 0 0 chr6 22117968 22118045 -160297197 - MADE1 DNA Mariner -1 79 3 207 0 0 0 chr6 22118487 22118510 -160296732 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1803 155 0 37 chr6 22118516 22118669 -160296573 - AluJo SINE Alu -26 286 148 2282 64 0 7 chr6 22118669 22118964 -160296278 - AluY SINE Alu -17 294 2 1803 155 0 37 chr6 22118964 22119107 -160296135 - AluJo SINE Alu -164 148 1 2596 39 3 6 chr6 22119241 22119553 -160295689 + AluY SINE Alu 1 311 0 265 273 230 0 chr6 22119672 22119833 -160295409 + L2 LINE L2 3112 3309 -4 39 0 0 0 chr6 22120859 22120898 -160294344 + AT_rich Low_complexity Low_complexity 1 39 0 2188 96 14 0 chr6 22120898 22121190 -160294052 - AluSc SINE Alu -13 296 1 2047 123 0 0 chr6 22121196 22121472 -160293770 - AluSx SINE Alu -19 293 18 383 286 0 0 chr6 22121990 22122074 -160293168 + MIR3 SINE MIR 73 156 -52 22 35 0 0 chr6 22122371 22122400 -160292842 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr6 22126230 22126255 -160288987 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr6 22127697 22127720 -160287522 + AT_rich Low_complexity Low_complexity 1 23 0 309 333 252 0 chr6 22128258 22128393 -160286849 + L2 LINE L2 3102 3270 -2 1161 207 61 52 chr6 22128959 22129288 -160285954 - L1ME2 LINE L1 0 6164 5833 201 238 175 0 chr6 22129413 22129476 -160285766 - MIR SINE MIR -6 256 183 1987 122 3 7 chr6 22129780 22130066 -160285176 - AluSx SINE Alu -26 286 2 686 267 62 50 chr6 22130260 22130500 -160284742 - MIR SINE MIR -7 255 13 2252 79 4 0 chr6 22131584 22131861 -160283381 - AluSp SINE Alu -19 294 17 22 56 0 0 chr6 22132293 22132329 -160282913 + AT_rich Low_complexity Low_complexity 1 36 0 224 290 0 0 chr6 22132646 22132708 -160282534 - MIR SINE MIR -1 261 200 29 0 0 0 chr6 22134698 22134727 -160280515 + AT_rich Low_complexity Low_complexity 1 29 0 2799 256 126 46 chr6 22135578 22135842 -160279400 + L2 LINE L2 1421 1662 -1652 2480 44 17 3 chr6 22135842 22136140 -160279102 - AluY SINE Alu -9 302 1 2799 256 126 46 chr6 22136140 22137099 -160278143 + L2 LINE L2 1662 2742 -572 778 153 68 62 chr6 22137100 22137142 -160278100 + MER3 DNA MER1_type 1 41 -121 2206 103 3 7 chr6 22137142 22137443 -160277799 + AluSx SINE Alu 1 300 -12 778 153 68 62 chr6 22137443 22137577 -160277665 + MER3 DNA MER1_type 41 131 -31 414 232 195 60 chr6 22137577 22137762 -160277480 + L2 LINE L2 2768 2977 -337 2336 101 0 0 chr6 22137767 22138075 -160277167 - AluSq SINE Alu -5 308 1 1867 157 0 0 chr6 22138239 22138542 -160276700 + AluJo SINE Alu 1 303 0 1691 170 3 7 chr6 22138602 22138909 -160276333 + AluJo SINE Alu 1 306 0 588 297 68 40 chr6 22140672 22140894 -160274348 + MIR SINE MIR 16 243 -19 295 310 109 22 chr6 22140937 22141121 -160274121 + MIR SINE MIR 48 247 -15 31633 102 13 58 chr6 22141140 22143257 -160271985 - L1PA7 LINE L1 0 6154 3942 2040 134 3 3 chr6 22143257 22143555 -160271687 - AluSg SINE Alu -12 298 1 31633 102 13 58 chr6 22143555 22147896 -160267346 - L1PA7 LINE L1 -2212 3942 2 2287 97 0 0 chr6 22147906 22148206 -160267036 - AluY SINE Alu -1 310 11 2097 142 0 0 chr6 22148207 22148503 -160266739 - AluSx SINE Alu -16 296 1 26 30 0 0 chr6 22149641 22149674 -160265568 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 22149794 22149828 -160265414 + AT_rich Low_complexity Low_complexity 1 34 0 237 65 0 0 chr6 22151546 22151577 -160263665 + (TA)n Simple_repeat Simple_repeat 2 32 0 269 347 95 7 chr6 22152475 22152622 -160262620 - MIR3 SINE MIR -3 205 46 508 347 23 12 chr6 22152802 22153046 -160262196 - MIR SINE MIR 0 262 14 180 375 50 19 chr6 22153451 22153611 -160261631 - L3 LINE CR1 -1410 167 3 1998 303 31 11 chr6 22153902 22154556 -160260686 + ERVL LTR ERVL 3230 3896 -1868 1449 82 0 0 chr6 22154557 22154741 -160260501 - AluSg/x SINE Alu -4 308 125 4651 277 34 12 chr6 22154742 22156105 -160259137 + ERVL LTR ERVL 3889 5281 -483 2039 234 96 12 chr6 22156107 22156688 -160258554 - L1MEc LINE L1 -5353 1043 414 1011 254 51 14 chr6 22156695 22156970 -160258272 - L1MEc LINE L1 -6030 366 82 406 309 56 5 chr6 22157655 22157856 -160257386 - MIR SINE MIR -13 249 33 2306 110 7 0 chr6 22158474 22158783 -160256459 - AluSx SINE Alu -1 311 1 563 168 42 18 chr6 22160005 22160172 -160255070 + CT-rich Low_complexity Low_complexity 4 174 0 2044 126 0 0 chr6 22160172 22160449 -160254793 - AluSx SINE Alu 0 312 36 5063 86 8 3 chr6 22160564 22161271 -160253971 - L1PA13 LINE L1 -2 6161 5451 217 244 0 0 chr6 22161409 22161454 -160253788 + CT-rich Low_complexity Low_complexity 2 46 0 517 158 24 0 chr6 22161682 22161764 -160253478 - FRAM/FAM SINE Alu -94 82 1 521 300 70 26 chr6 22161767 22162150 -160253092 - HAL1 LINE L1 -910 1597 1198 342 111 0 0 chr6 22162155 22162200 -160253042 - AluS SINE Alu -239 64 20 6306 132 24 7 chr6 22162404 22163635 -160251607 - L1MA4A LINE L1 -11 6292 5048 495 0 0 0 chr6 22163779 22163834 -160251408 + (CA)n Simple_repeat Simple_repeat 2 56 0 220 205 0 0 chr6 22163854 22163893 -160251349 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2285 125 0 0 chr6 22164051 22164363 -160250879 - AluSx SINE Alu 0 312 1 967 256 97 44 chr6 22164457 22164910 -160250332 - L1MC/D LINE L1 -2024 5784 5308 314 323 48 26 chr6 22165078 22165267 -160249975 - L1MA4A LINE L1 -1071 5075 4883 302 265 128 15 chr6 22165352 22165556 -160249686 - L1MC5 LINE L1 -48 7913 7687 9916 20 0 0 chr6 22165569 22167497 -160247745 - L1PA2 LINE L1 -2 6153 4226 1705 164 34 10 chr6 22167510 22167628 -160247614 + AluJb SINE Alu 1 115 -197 387 0 0 0 chr6 22167628 22167671 -160247571 + (CA)n Simple_repeat Simple_repeat 1 43 0 1705 164 34 10 chr6 22167671 22167844 -160247398 + AluJb SINE Alu 115 299 -13 6908 64 11 0 chr6 22168208 22169305 -160245937 - L1PA6 LINE L1 -4 6150 5051 1924 163 0 0 chr6 22169465 22169765 -160245477 - AluJb SINE Alu -10 302 3 1074 196 78 4 chr6 22170047 22170302 -160244940 + L1MA8 LINE L1 6016 6289 -2 604 311 58 0 chr6 22171165 22171381 -160243861 - MIR SINE MIR -12 250 19 1325 144 73 33 chr6 22171537 22171839 -160243403 - L1MC2 LINE L1 -11 7746 6138 4347 154 62 34 chr6 22171971 22172881 -160242361 - L1MC3 LINE L1 -331 7454 6520 255 276 41 87 chr6 22172950 22173146 -160242096 - HAL1b LINE L1 -610 738 552 308 29 0 0 chr6 22173480 22173515 -160241727 - U2 snRNA snRNA -153 35 1 202 184 53 0 chr6 22173638 22173676 -160241566 - MIR3 SINE MIR -46 162 123 777 255 100 4 chr6 22174549 22174780 -160240462 + MIR SINE MIR 6 258 -4 228 178 22 0 chr6 22177142 22177187 -160238055 + L2 LINE L2 3267 3312 -1 248 237 0 17 chr6 22177370 22177429 -160237813 - MLT1L LTR MaLR -12 603 546 373 284 49 66 chr6 22177495 22177738 -160237504 - MLT1J LTR MaLR -169 342 104 2241 251 31 33 chr6 22178263 22179114 -160236128 - L1M4 LINE L1 -1372 4774 3926 1930 195 21 12 chr6 22179656 22180281 -160234961 - L1MC4 LINE L1 -95 7713 7155 1960 123 3 48 chr6 22180642 22180952 -160234290 - AluSx SINE Alu -11 301 6 405 277 71 49 chr6 22181525 22181709 -160233533 + MIR SINE MIR 23 210 -52 309 327 75 28 chr6 22182112 22182326 -160232916 + L2 LINE L2 2302 2525 -789 239 264 33 22 chr6 22182685 22182776 -160232466 - L1ME4a LINE L1 -94 6027 5936 2163 186 50 0 chr6 22182852 22183249 -160231993 - MER47B DNA MER2_type 0 418 2 202 222 22 0 chr6 22183461 22183506 -160231736 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 285 279 41 54 chr6 22183632 22183779 -160231463 - L2 LINE L2 -183 3089 2945 319 191 0 15 chr6 22183841 22183909 -160231333 - L1MB8 LINE L1 0 6178 6112 3937 173 36 8 chr6 22183916 22184690 -160230552 - L1MB8 LINE L1 -111 6067 5272 438 269 64 95 chr6 22185293 22185484 -160229758 - L2 LINE L2 -665 2649 2468 2355 103 3 0 chr6 22185484 22185794 -160229448 + AluSq SINE Alu 1 311 -2 438 269 64 95 chr6 22185794 22185885 -160229357 - L2 LINE L2 -846 2468 2376 1145 256 63 94 chr6 22185892 22186221 -160229021 + LTR33A LTR ERVL 1 339 -184 1246 132 66 31 chr6 22186221 22186449 -160228793 - MER46A DNA MER2_type 0 236 1 1145 256 63 94 chr6 22186449 22186509 -160228733 + LTR33A LTR ERVL 339 399 -124 1333 228 67 92 chr6 22186509 22187062 -160228180 - MER34 LTR ERV1 -3 539 1 1145 256 63 94 chr6 22187062 22187211 -160228031 + LTR33A LTR ERVL 399 523 0 362 271 207 55 chr6 22187211 22187544 -160227698 - L2 LINE L2 -941 2373 2092 2432 90 3 0 chr6 22187544 22187855 -160227387 + AluSx SINE Alu 1 312 0 362 271 207 55 chr6 22187855 22188067 -160227175 - L2 LINE L2 -1222 2092 1745 2278 93 3 0 chr6 22188069 22188370 -160226872 + AluSq SINE Alu 1 302 -11 21 0 0 0 chr6 22188429 22188450 -160226792 + AT_rich Low_complexity Low_complexity 1 21 0 1177 273 159 28 chr6 22188504 22189216 -160226026 - L1MC4a LINE L1 -1742 6066 5262 2094 91 0 69 chr6 22189401 22189720 -160225522 - AluSc SINE Alu -12 297 1 2327 92 0 0 chr6 22190449 22190752 -160224490 - AluSg SINE Alu -2 308 6 661 293 83 18 chr6 22191526 22191755 -160223487 + MIR SINE MIR 18 261 -1 436 303 82 50 chr6 22192299 22192874 -160222368 - L1MC4a LINE L1 -1802 6006 5414 392 316 114 0 chr6 22192895 22193123 -160222119 + L1MC/D LINE L1 4975 5228 -918 1030 281 37 51 chr6 22193185 22193620 -160221622 + L1MC/D LINE L1 5281 5709 -2099 301 136 22 6 chr6 22193620 22193734 -160221508 + Alu SINE Alu 240 329 0 22 0 0 0 chr6 22194163 22194185 -160221057 + AT_rich Low_complexity Low_complexity 1 22 0 1887 161 0 26 chr6 22194611 22194921 -160220321 - AluSx SINE Alu -10 302 1 39 0 0 0 chr6 22194924 22194963 -160220279 + AT_rich Low_complexity Low_complexity 1 39 0 371 266 80 26 chr6 22194978 22195091 -160220151 + L2 LINE L2 3193 3311 -2 2281 68 41 10 chr6 22195184 22195478 -160219764 + AluY SINE Alu 1 303 -8 5008 113 46 75 chr6 22195623 22196238 -160219004 - Tigger3b DNA MER2_type -1797 1231 599 2131 100 0 4 chr6 22196238 22196558 -160218684 + AluSc SINE Alu 1 319 0 5008 113 46 75 chr6 22196558 22196837 -160218405 - Tigger3b DNA MER2_type -2429 599 365 2338 108 0 0 chr6 22196837 22197143 -160218099 - AluSg SINE Alu -4 306 1 5008 113 46 75 chr6 22197143 22197233 -160218009 - Tigger3b DNA MER2_type -2663 365 274 592 194 0 0 chr6 22197231 22197329 -160217913 - Tigger3b DNA MER2_type -1129 102 5 * 2289 91 0 3 chr6 22197537 22197833 -160217409 - AluSq SINE Alu -18 295 1 391 268 0 31 chr6 22197963 22198060 -160217182 - L2 LINE L2 -3 3269 3176 331 210 37 105 chr6 22198519 22198681 -160216561 - L2 LINE L2 -577 2737 2587 1304 86 0 0 chr6 22198714 22198877 -160216365 + AluY SINE Alu 133 295 -16 2084 111 0 17 chr6 22198917 22199214 -160216028 - AluSg1 SINE Alu -15 294 3 11710 115 9 1 chr6 22200348 22202911 -160212331 - L1PA10 LINE L1 -2 6166 3581 232 280 129 11 chr6 22203592 22203685 -160211557 - L1ME3A LINE L1 -104 6066 5963 898 285 110 10 chr6 22203757 22204238 -160211004 - L1ME3A LINE L1 -222 5948 5420 2081 114 0 29 chr6 22204238 22204407 -160210835 - AluSx SINE Alu -10 302 144 2215 98 7 0 chr6 22204407 22204694 -160210548 - AluSc SINE Alu -15 294 6 2081 114 0 29 chr6 22204694 22204830 -160210412 - AluSx SINE Alu -168 144 6 1071 90 0 0 chr6 22204838 22204971 -160210271 - AluSq/x SINE Alu -179 133 1 1160 254 108 43 chr6 22204975 22205815 -160209427 - L1ME3A LINE L1 -769 5377 4529 2050 154 3 26 chr6 22206213 22206558 -160208684 + MER1B DNA MER1_type 1 337 0 642 255 56 68 chr6 22206723 22206974 -160208268 - MIR SINE MIR -14 248 1 194 368 47 0 chr6 22206979 22207085 -160208157 - L2 LINE L2 -999 2315 2205 1636 164 0 63 chr6 22209606 22209923 -160205319 - AluJb SINE Alu -15 297 1 28 0 0 0 chr6 22209926 22209954 -160205288 + AT_rich Low_complexity Low_complexity 1 28 0 387 307 14 61 chr6 22210386 22210598 -160204644 + L2 LINE L2 2205 2406 -908 250 314 95 9 chr6 22211844 22211949 -160203293 + L2 LINE L2 3200 3313 0 205 282 141 12 chr6 22213389 22213474 -160201768 + L2 LINE L2 3137 3232 -40 386 287 25 102 chr6 22213800 22214114 -160201128 - MLT1J LTR MaLR -196 315 26 1342 259 58 22 chr6 22215955 22216403 -160198839 - MER20B DNA MER1_type 0 783 320 575 215 56 28 chr6 22216422 22216566 -160198676 - MER6 DNA MER2_type -1 864 -4 * 743 266 39 0 chr6 22216566 22216766 -160198476 - MER20B DNA MER1_type -513 270 63 353 329 79 27 chr6 22216922 22217322 -160197920 + L1MC/D LINE L1 5307 5725 -532 397 353 111 0 chr6 22217998 22218151 -160197091 - L2 LINE L2 -1 3271 3102 483 205 6 121 chr6 22218284 22218450 -160196792 - MLT1L LTR MaLR -59 556 410 405 245 0 0 chr6 22218557 22218659 -160196583 - L1MC4 LINE L1 -7 8035 7934 194 174 22 0 chr6 22218858 22218904 -160196338 + CT-rich Low_complexity Low_complexity 2 48 0 944 201 0 0 chr6 22219111 22219280 -160195962 - FAM SINE Alu -2 173 5 4048 198 71 145 chr6 22219349 22221347 -160193895 - L1MC4a LINE L1 -1 7807 5959 535 151 122 22 chr6 22221355 22221494 -160193748 - L1MC4a LINE L1 -719 7089 6937 1566 258 78 13 chr6 22221532 22222137 -160193105 - L1MC4a LINE L1 -1852 5956 5313 245 272 76 0 chr6 22222375 22222467 -160192775 - L1MC4a LINE L1 -1131 5015 4917 779 193 0 35 chr6 22222501 22222672 -160192570 - FAM SINE Alu -1 48 1 879 218 0 0 chr6 22222525 22222690 -160192552 - FAM SINE Alu -9 166 2 247 273 67 13 chr6 22222698 22222848 -160192394 - L1MC4a LINE L1 -1226 4920 4763 305 43 43 0 chr6 22222913 22222959 -160192283 + (TCTCCC)n Simple_repeat Simple_repeat 1 48 0 805 185 11 0 chr6 22222959 22223137 -160192105 + CT-rich Low_complexity Low_complexity 1 180 0 1937 144 23 10 chr6 22223137 22223443 -160191799 - AluSx SINE Alu -2 310 1 2285 99 0 0 chr6 22223571 22223865 -160191377 - AluSx SINE Alu -18 294 1 26 0 0 0 chr6 22223867 22223893 -160191349 + AT_rich Low_complexity Low_complexity 1 26 0 1666 178 33 21 chr6 22224024 22224341 -160190901 + MER2 DNA MER2_type 1 324 -21 2282 117 19 27 chr6 22224341 22224708 -160190534 + THE1B LTR MaLR 1 364 0 1666 178 33 21 chr6 22224708 22224721 -160190521 + MER2 DNA MER2_type 324 335 -10 496 297 57 64 chr6 22224821 22225226 -160190016 - L1MC4a LINE L1 -1788 4358 3952 2546 134 45 14 chr6 22225226 22225672 -160189570 - L1MA5 LINE L1 0 6300 5841 496 297 57 64 chr6 22225672 22226257 -160188985 - L1MC4a LINE L1 -2194 3952 3375 6319 139 67 13 chr6 22226260 22227175 -160188067 + Tigger3b DNA MER2_type 1 994 -2034 2253 101 3 0 chr6 22227175 22227512 -160187730 + AluY SINE Alu 1 311 0 6319 139 67 13 chr6 22227512 22227764 -160187478 + Tigger3b DNA MER2_type 994 1231 0 607 250 199 56 chr6 22227813 22227859 -160187383 - L1MC4a LINE L1 -2974 3172 3134 2032 130 3 0 chr6 22227859 22228158 -160187084 - AluSx SINE Alu -12 300 1 607 250 199 56 chr6 22228158 22228212 -160187030 - L1MC4a LINE L1 -3012 3134 3089 1960 134 10 0 chr6 22228212 22228503 -160186739 - AluSq SINE Alu -18 295 2 607 250 199 56 chr6 22228503 22228849 -160186393 - L1MC4a LINE L1 -3057 3089 2661 796 154 44 34 chr6 22229293 22229491 -160185751 + MER6 DNA MER2_type -65 865 0 31 0 0 0 chr6 22229533 22229564 -160185678 + AT_rich Low_complexity Low_complexity 1 31 0 1457 178 6 60 chr6 22229689 22230003 -160185239 - AluJo SINE Alu -13 299 3 528 302 118 30 chr6 22230241 22230714 -160184528 - HAL1b LINE L1 -597 751 237 26 30 0 0 chr6 22230739 22230772 -160184470 + AT_rich Low_complexity Low_complexity 1 33 0 1968 151 3 7 chr6 22230849 22231153 -160184089 - AluSx SINE Alu -7 305 3 23 33 0 0 chr6 22231168 22231198 -160184044 + AT_rich Low_complexity Low_complexity 1 30 0 202 118 0 29 chr6 22231267 22231301 -160183941 + L3b LINE CR1 1369 1401 -182 182 262 49 16 chr6 22232220 22232281 -160182961 - L2 LINE L2 -13 3300 3238 272 301 27 33 chr6 22232313 22232496 -160182746 + LTR41 LTR ERVL 1 182 -591 2007 175 11 11 chr6 22232605 22232970 -160182272 - MLT1A1 LTR MaLR 0 365 1 1896 141 171 11 chr6 22233121 22233490 -160181752 - MSTA LTR MaLR 0 428 1 182 353 29 0 chr6 22233550 22233618 -160181624 + L2 LINE L2 3095 3164 -108 1026 170 12 0 chr6 22233741 22233912 -160181330 - FAM SINE Alu 0 175 3 258 328 67 37 chr6 22233958 22234092 -160181150 - MIR3 SINE MIR -49 159 22 5869 185 34 82 chr6 22234331 22234948 -160180294 - L1MC1 LINE L1 0 6613 5968 2131 132 0 0 chr6 22234948 22235244 -160179998 + AluSx SINE Alu 1 296 -16 5869 185 34 82 chr6 22235244 22236505 -160178737 - L1MC1 LINE L1 -645 5968 4647 852 233 0 12 chr6 22236505 22236677 -160178565 - AluJo SINE Alu -142 170 1 5869 185 34 82 chr6 22236677 22237010 -160178232 - L1MC1 LINE L1 -1966 4647 4299 3249 112 85 0 chr6 22237010 22237493 -160177749 + MER1A DNA MER1_type 4 527 0 5869 185 34 82 chr6 22237493 22238238 -160177004 - L1MC1 LINE L1 -2314 4299 3651 * 8161 169 83 34 chr6 22238235 22238330 -160176912 - L1MC1 LINE L1 -4458 1968 1879 1561 169 67 0 chr6 22238330 22238614 -160176628 - AluJb SINE Alu -9 303 1 8161 169 83 34 chr6 22238614 22240377 -160174865 - L1MC1 LINE L1 -4547 1879 20 369 295 48 80 chr6 22240981 22241459 -160173783 - L1ME LINE L1 -299 5822 5360 311 195 27 60 chr6 22242628 22242777 -160172465 + Charlie7 DNA MER1_type 2429 2572 -40 2494 67 0 13 chr6 22243633 22243946 -160171296 + AluY SINE Alu 1 309 -2 1252 147 0 206 chr6 22244664 22244831 -160170411 - AluSx SINE Alu -15 297 97 453 36 0 0 chr6 22244831 22244886 -160170356 + (TG)n Simple_repeat Simple_repeat 2 56 0 1252 147 0 206 chr6 22244886 22244962 -160170280 - AluSx SINE Alu -215 97 154 339 25 0 0 chr6 22244962 22245002 -160170240 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1252 147 0 206 chr6 22245002 22245131 -160170111 - AluSx SINE Alu -157 155 1 1568 182 173 3 chr6 22245515 22245884 -160169358 + MSTB1 LTR MaLR 1 432 0 1308 156 3 67 chr6 22246526 22246809 -160168433 - L1MB3 LINE L1 0 6183 5919 24 53 0 0 chr6 22247395 22247433 -160167809 + AT_rich Low_complexity Low_complexity 1 38 0 2050 192 63 11 chr6 22249026 22249484 -160165758 - L1MC3 LINE L1 -15 7770 7289 1365 92 0 0 chr6 22250996 22251170 -160164072 + AluSp SINE Alu 136 309 -4 459 256 139 37 chr6 22252080 22252295 -160162947 + MER102a DNA MER1_type 93 329 -1 4047 124 50 32 chr6 22252912 22253668 -160161574 - LTR1 LTR ERV1 0 785 16 185 348 0 14 chr6 22253703 22253772 -160161470 + L2 LINE L2 417 484 -2830 1042 242 0 5 chr6 22253986 22254209 -160161033 + MER58A DNA MER1_type 3 224 0 313 258 161 0 chr6 22254822 22254946 -160160296 - L2 LINE L2 -5 3308 3165 1091 279 141 18 chr6 22254977 22255368 -160159874 - L2 LINE L2 -42 3271 2833 253 268 0 0 chr6 22258340 22258396 -160156846 + MER94 DNA DNA 3 58 -76 274 241 0 0 chr6 22258539 22258597 -160156645 + L2 LINE L2 3256 3313 0 454 278 56 0 chr6 22259794 22259920 -160155322 + L2 LINE L2 3161 3293 -20 1043 159 169 0 chr6 22260104 22260305 -160154937 + MER46A DNA MER2_type 2 236 0 414 284 66 27 chr6 22260357 22260540 -160154702 - MLT1L LTR MaLR -2 613 424 1629 151 0 0 chr6 22261102 22261347 -160153895 + Tigger3(Golem) DNA MER2_type 2794 3038 0 213 386 105 18 chr6 22261647 22261761 -160153481 + MIR SINE MIR 20 143 -65 542 333 122 17 chr6 22262364 22262782 -160152460 - MLT1L LTR MaLR -6 609 148 239 324 0 14 chr6 22263081 22263152 -160152090 - L2 LINE L2 -218 3054 2985 270 167 0 0 chr6 22263293 22263353 -160151889 + A-rich Low_complexity Low_complexity 4 63 0 2093 104 14 3 chr6 22263441 22263728 -160151514 - AluSg SINE Alu -20 290 1 38 0 0 0 chr6 22265050 22265088 -160150154 + AT_rich Low_complexity Low_complexity 1 38 0 1432 159 0 4 chr6 22265167 22265393 -160149849 - AluJo SINE Alu -2 310 86 3187 200 52 42 chr6 22265721 22266537 -160148705 - L1MA9 LINE L1 -25 6287 5464 21 36 0 0 chr6 22266550 22266578 -160148664 + AT_rich Low_complexity Low_complexity 1 28 0 399 345 87 31 chr6 22266860 22267182 -160148060 - L2 LINE L2 -7 3306 2967 2112 256 119 62 chr6 22267200 22268411 -160146831 - L2 LINE L2 -690 2624 1345 27 0 0 0 chr6 22268412 22268439 -160146803 + AT_rich Low_complexity Low_complexity 1 27 0 28 29 0 0 chr6 22269590 22269625 -160145617 + AT_rich Low_complexity Low_complexity 1 35 0 411 342 58 21 chr6 22269724 22269914 -160145328 - MIR3 SINE MIR -9 199 3 25 51 0 0 chr6 22270381 22270420 -160144822 + AT_rich Low_complexity Low_complexity 1 39 0 296 265 49 68 chr6 22270465 22270627 -160144615 - L1ME3A LINE L1 -50 6120 5962 397 211 38 45 chr6 22270715 22270848 -160144394 - L1MC5 LINE L1 -431 7530 7399 3296 151 101 82 chr6 22271070 22271328 -160143914 - L1MA4A LINE L1 -24 6279 6027 1791 119 32 0 chr6 22271328 22271581 -160143661 - AluSx SINE Alu -45 267 7 3296 151 101 82 chr6 22271581 22271750 -160143492 - L1MA4A LINE L1 -276 6027 5863 3323 63 0 0 chr6 22271750 22272176 -160143066 - L1PA5 LINE L1 0 6154 5729 3296 151 101 82 chr6 22272176 22272514 -160142728 - L1MA4A LINE L1 -440 5863 5507 2352 112 0 0 chr6 22272514 22272819 -160142423 - AluSg SINE Alu -5 305 1 3296 151 101 82 chr6 22272819 22272872 -160142370 - L1MA4A LINE L1 -796 5507 5456 425 245 159 0 chr6 22273362 22273513 -160141729 + LTR28 LTR ERV1 4 178 -842 370 198 12 0 chr6 22273529 22273610 -160141632 + LTR1 LTR ERV1 109 190 -595 * 2020 178 137 24 chr6 22273579 22274039 -160141203 + LTR28 LTR ERV1 308 819 -201 1657 177 38 0 chr6 22274038 22274354 -160140888 + LTR28 LTR ERV1 693 1020 0 * 1989 145 0 16 chr6 22274722 22275026 -160140216 - AluSx SINE Alu -13 299 1 1213 201 76 8 chr6 22275223 22275506 -160139736 + AluSx SINE Alu 1 301 0 2364 101 3 0 chr6 22276291 22276599 -160138643 + AluSp SINE Alu 1 309 -4 1798 186 58 41 chr6 22276606 22277321 -160137921 + MER4E LTR ERV1 1 779 0 3683 150 46 11 chr6 22277388 22278036 -160137206 - LTR51 LTR ERV1 0 671 1 579 246 83 76 chr6 22278036 22278584 -160136658 - MER34C LTR ERV1 -6 536 2 399 333 0 0 chr6 22279412 22279520 -160135722 + MIR3 SINE MIR 87 194 -14 216 135 0 0 chr6 22279635 22279672 -160135570 + (T)n Simple_repeat Simple_repeat 1 37 0 337 269 13 0 chr6 22279806 22279884 -160135358 + L3 LINE CR1 1426 1504 -73 939 233 83 0 chr6 22280349 22280577 -160134665 - MIR SINE MIR -14 248 2 245 330 20 30 chr6 22280680 22280780 -160134462 - L2 LINE L2 -32 3281 3183 1340 167 84 43 chr6 22280826 22281125 -160134117 + AluSx SINE Alu 1 311 -1 475 97 29 29 chr6 22281172 22281275 -160133967 + GA-rich Low_complexity Low_complexity 2 104 0 1248 293 101 38 chr6 22281275 22281351 -160133891 - L2 LINE L2 -124 3189 3119 2383 98 3 0 chr6 22281351 22281657 -160133585 + AluSx SINE Alu 1 307 -5 1248 293 101 38 chr6 22281657 22282316 -160132926 - L2 LINE L2 -194 3119 2403 25 31 0 0 chr6 22282813 22282845 -160132397 + AT_rich Low_complexity Low_complexity 1 32 0 882 196 0 0 chr6 22282845 22282998 -160132244 - FRAM SINE Alu -13 153 1 186 189 0 0 chr6 22283014 22283051 -160132191 + T-rich Low_complexity Low_complexity 1 37 0 2080 124 3 34 chr6 22283053 22283375 -160131867 - AluSx SINE Alu 0 312 1 1352 152 16 4 chr6 22284199 22284442 -160130800 - MER101 LTR ERV1 0 474 229 403 315 11 67 chr6 22284474 22284652 -160130590 + MIR3 SINE MIR 36 203 -5 2282 128 0 0 chr6 22284655 22284967 -160130275 + AluSx SINE Alu 1 312 0 24 32 0 0 chr6 22285112 22285143 -160130099 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 22285498 22285528 -160129714 + AT_rich Low_complexity Low_complexity 1 30 0 456 168 11 42 chr6 22285555 22285650 -160129592 - AluJ/FLAM SINE Alu -215 97 6 2250 105 7 7 chr6 22285652 22285958 -160129284 - AluSx SINE Alu -6 306 1 420 57 0 71 chr6 22285980 22286033 -160129209 - L1PA16 LINE L1 -9 6157 6109 2171 120 62 11 chr6 22286033 22286390 -160128852 - THE1C LTR MaLR 0 375 1 420 57 0 71 chr6 22286390 22286406 -160128836 - L1PA16 LINE L1 -57 6109 6093 904 181 62 14 chr6 22286948 22287158 -160128084 + MER58A DNA MER1_type 4 223 -1 2313 71 0 7 chr6 22287277 22287574 -160127668 + AluY SINE Alu 1 295 -16 1977 133 0 32 chr6 22289274 22289583 -160125659 - AluJo SINE Alu -9 303 5 287 299 13 0 chr6 22290997 22291074 -160124168 + L2 LINE L2 3235 3312 -1 5588 121 9 4 chr6 22292107 22293083 -160122159 - L1PA14 LINE L1 0 6161 5170 21 57 0 0 chr6 22293465 22293500 -160121742 + AT_rich Low_complexity Low_complexity 1 35 0 414 215 0 139 chr6 22295149 22295293 -160119949 - L2 LINE L2 0 3313 3190 341 227 0 0 chr6 22296408 22296474 -160118768 + MIR SINE MIR 3 68 -194 885 128 47 14 chr6 22296485 22296633 -160118609 + MER30 DNA MER1_type 78 230 0 4432 160 44 28 chr6 22297532 22298833 -160116409 - L1MA9 LINE L1 -38 6274 4953 738 220 28 0 chr6 22298821 22298998 -160116244 + L1 LINE L1 4576 4757 -1389 * 1265 173 42 137 chr6 22299003 22299114 -160116128 + AluJo SINE Alu 9 129 -183 228 111 0 0 chr6 22299114 22299150 -160116092 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1265 173 42 137 chr6 22299150 22299374 -160115868 + AluJo SINE Alu 129 312 0 855 112 25 87 chr6 22299381 22299577 -160115665 + L1 LINE L1 4747 4930 -1216 372 164 0 0 chr6 22299733 22299800 -160115442 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 297 280 60 99 chr6 22299994 22300226 -160115016 + L2 LINE L2 2738 2960 -354 2446 90 0 0 chr6 22300324 22300635 -160114607 - AluY SINE Alu 0 311 1 913 158 0 20 chr6 22300648 22300794 -160114448 - FLAM_C SINE Alu 0 143 1 183 317 59 0 chr6 22300805 22300906 -160114336 + L2 LINE L2 3119 3225 -88 349 206 14 0 chr6 22300907 22300980 -160114262 - AluJo SINE Alu -6 296 223 857 139 42 7 chr6 22300980 22301124 -160114118 - AluJo SINE Alu -128 184 36 314 258 65 0 chr6 22301124 22301217 -160114025 + L2 LINE L2 3215 3313 0 322 297 11 97 chr6 22301418 22301470 -160113772 + MIR SINE MIR 103 158 -104 2386 79 33 0 chr6 22301470 22301773 -160113469 + AluSq SINE Alu 1 313 0 322 297 11 97 chr6 22301773 22301895 -160113347 + MIR SINE MIR 158 262 0 255 235 0 0 chr6 22302071 22302122 -160113120 - MLT1B LTR MaLR 0 390 340 717 194 167 6 chr6 22302142 22302322 -160112920 - MER3 DNA MER1_type 0 209 1 186 143 0 0 chr6 22303274 22303309 -160111933 + (CA)n Simple_repeat Simple_repeat 1 35 0 1395 198 128 12 chr6 22303317 22303747 -160111495 - L1MC4 LINE L1 0 8042 7563 3577 179 64 34 chr6 22303787 22304122 -160111120 - L1MB7 LINE L1 -7 6177 5854 1540 174 92 0 chr6 22304122 22304438 -160110804 + MER7A DNA MER2_type 4 346 0 3577 179 64 34 chr6 22304438 22304742 -160110500 - L1MB7 LINE L1 -330 5854 5561 312 27 0 0 chr6 22304742 22304779 -160110463 + (TG)n Simple_repeat Simple_repeat 2 38 0 1731 183 0 11 chr6 22304786 22305071 -160110171 - AluJo SINE Alu -30 282 1 3577 179 64 34 chr6 22305071 22305127 -160110115 - L1MB7 LINE L1 -628 5556 5503 832 168 69 0 chr6 22305127 22305300 -160109942 - L1MB3 LINE L1 0 6183 5999 3577 179 64 34 chr6 22305300 22305725 -160109517 - L1MB7 LINE L1 -681 5503 5018 202 367 102 49 chr6 22305934 22307310 -160107932 + L2 LINE L2 589 2037 -1277 1220 39 0 7 chr6 22307593 22307748 -160107494 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 1862 139 7 11 chr6 22307750 22308023 -160107219 - AluSx SINE Alu -40 272 1 193 329 0 29 chr6 22308866 22308936 -160106306 + L2 LINE L2 3226 3293 -20 537 241 167 0 chr6 22309650 22309681 -160105561 + AluJo SINE Alu 9 33 -279 225 94 0 0 chr6 22309681 22309713 -160105529 + (CTGGGG)n Simple_repeat Simple_repeat 3 34 0 537 241 167 0 chr6 22309713 22309843 -160105399 + AluJo SINE Alu 33 197 -115 2425 85 7 0 chr6 22360411 22360739 -160054503 - AluSc SINE Alu 0 330 1 1227 231 21 3 chr6 22361292 22361574 -160053668 - MLT1A1 LTR MaLR 0 365 79 243 217 69 74 chr6 22361996 22362171 -160053071 + L1ME4a LINE L1 5932 6105 -16 30 93 0 0 chr6 22362182 22362268 -160052974 + AT_rich Low_complexity Low_complexity 1 86 0 27 62 0 37 chr6 22363084 22363165 -160052077 + AT_rich Low_complexity Low_complexity 1 78 0 232 382 24 16 chr6 22363230 22363353 -160051889 - MIR3 SINE MIR -13 195 72 2229 86 10 7 chr6 22363401 22363704 -160051538 - AluSc SINE Alu -5 304 1 2225 113 3 7 chr6 22363980 22364290 -160050952 + AluSq SINE Alu 1 309 -4 2207 221 76 39 chr6 22364889 22365593 -160049649 - L1MC4 LINE L1 -5 8037 5612 1199 196 93 36 chr6 22365595 22365927 -160049315 + MLT2D LTR ERVL 1 351 -63 229 114 0 0 chr6 22365981 22366016 -160049226 + MLT2D LTR ERVL 363 397 0 247 229 0 0 chr6 22366016 22366064 -160049178 + L1M4 LINE L1 4062 4109 -2037 663 233 68 79 chr6 22366639 22366931 -160048311 - L2 LINE L2 0 3313 3025 2273 91 0 3 chr6 22366956 22367254 -160047988 - AluY SINE Alu -14 297 1 1626 184 0 34 chr6 22367259 22367553 -160047689 - AluJo SINE Alu -20 292 9 1586 92 61 0 chr6 22367861 22368089 -160047153 - L1PB1 LINE L1 -1 6150 5909 816 209 0 0 chr6 22368124 22368282 -160046960 + MLT1A1 LTR MaLR 1 158 -207 1080 165 0 12 chr6 22368282 22368452 -160046790 + AluSc SINE Alu 112 279 -30 980 184 32 37 chr6 22368458 22368676 -160046566 + MLT1A1 LTR MaLR 144 360 -5 1464 78 289 14 chr6 22369722 22370006 -160045236 - L1PA8 LINE L1 0 6172 5811 463 304 100 33 chr6 22370047 22370317 -160044925 + LTR67 LTR ERVL 3 290 -267 230 268 14 14 chr6 22370427 22370498 -160044744 + LTR67 LTR ERVL 471 541 -16 2126 108 10 3 chr6 22371490 22371787 -160043455 + AluSc SINE Alu 1 299 -10 184 327 18 0 chr6 22371791 22371846 -160043396 - MIR SINE MIR -71 137 82 356 294 64 0 chr6 22373155 22373264 -160041978 - MIR SINE MIR -59 149 34 613 164 36 79 chr6 22373466 22373543 -160041699 + MER33 DNA MER1_type 1 69 -2516 2364 70 10 13 chr6 22373543 22373845 -160041397 - AluY SINE Alu -10 301 1 613 164 36 79 chr6 22373845 22373932 -160041310 + MER33 DNA MER1_type 69 158 -166 605 202 147 16 chr6 22373952 22374081 -160041161 + FRAM SINE Alu 1 146 -30 628 170 65 0 chr6 22374100 22374253 -160040989 + MER33 DNA MER1_type 162 324 0 23 78 0 0 chr6 22374452 22374503 -160040739 + AT_rich Low_complexity Low_complexity 1 51 0 428 225 21 99 chr6 22375428 22375619 -160039623 + L2 LINE L2 3138 3313 0 2293 218 63 18 chr6 22376215 22376900 -160038342 + L1MC4a LINE L1 6646 7361 -447 2012 102 11 14 chr6 22377026 22377311 -160037931 + AluSx SINE Alu 6 289 -23 461 228 59 0 chr6 22377323 22377424 -160037818 - MIR SINE MIR -74 188 82 492 229 0 8 chr6 22378725 22378847 -160036395 - L1ME3A LINE L1 -2 6168 6048 2266 76 0 27 chr6 22378854 22379155 -160036087 + AluY SINE Alu 1 293 -18 1771 151 4 0 chr6 22379229 22379494 -160035748 - AluSx SINE Alu -2 310 45 1002 278 188 16 chr6 22379631 22379774 -160035468 - L2 LINE L2 -571 2743 2626 432 0 0 0 chr6 22379774 22379822 -160035420 + (CA)n Simple_repeat Simple_repeat 1 48 0 1002 278 188 16 chr6 22379822 22380178 -160035064 - L2 LINE L2 -688 2626 2158 10506 160 31 35 chr6 22381268 22381717 -160033525 + L1M4c LINE L1 16 466 -5918 894 138 0 8 chr6 22381717 22381847 -160033395 + FLAM_C SINE Alu 1 129 -4 10506 160 31 35 chr6 22381847 22381971 -160033271 + L1M4c LINE L1 466 589 -5795 2396 98 3 0 chr6 22381971 22382278 -160032964 + AluSp SINE Alu 1 308 -5 10506 160 31 35 chr6 22382278 22383913 -160031329 + L1M4c LINE L1 589 2215 -4169 561 116 12 0 chr6 22383915 22384001 -160031241 - Tigger5 DNA MER2_type 0 2323 2237 229 184 0 0 chr6 22384011 22384049 -160031193 - Tigger5 DNA MER2_type -2268 55 18 311 203 29 14 chr6 22384056 22384125 -160031117 - Tigger5 DNA MER2_type -6 2317 2248 675 100 157 21 chr6 22384145 22384285 -160030957 + L1M4c LINE L1 2216 2374 -4010 1038 202 6 65 chr6 22384311 22384686 -160030556 + L1MB3 LINE L1 5820 6141 -42 1440 133 24 0 chr6 22384686 22384896 -160030346 + AluJb SINE Alu 83 297 -15 954 247 77 30 chr6 22385051 22385609 -160029633 - MLT2E LTR ERVL 0 628 1 31 58 0 0 chr6 22386017 22386069 -160029173 + AT_rich Low_complexity Low_complexity 1 52 0 315 192 103 0 chr6 22386309 22386387 -160028855 + MER53 DNA DNA 103 188 -1 1802 194 75 20 chr6 22386566 22387009 -160028233 + MLT1C LTR MaLR 1 467 0 356 325 105 53 chr6 22387021 22387249 -160027993 - MIR SINE MIR -2 260 21 266 57 0 0 chr6 22388989 22389024 -160026218 - MLT2C1 LTR ERVL 0 397 363 387 0 0 0 chr6 22389041 22389084 -160026158 + (CA)n Simple_repeat Simple_repeat 2 44 0 1291 186 137 25 chr6 22389084 22389406 -160025836 - MLT1E LTR MaLR -30 563 206 418 234 0 82 chr6 22389629 22389787 -160025455 + AluSg SINE Alu 9 153 -157 848 153 0 0 chr6 22390876 22391007 -160024235 - FLAM_C SINE Alu -2 131 1 3655 149 26 17 chr6 22391026 22391517 -160023725 + Tigger1 DNA MER2_type 1 501 -1917 1658 181 7 3 chr6 22391517 22391804 -160023438 + AluJb SINE Alu 1 288 -24 3655 149 26 17 chr6 22391804 22392002 -160023240 + Tigger1 DNA MER2_type 501 696 -1722 898 206 0 0 chr6 22392003 22392158 -160023084 + AluJb SINE Alu 134 288 -24 3481 99 23 2 chr6 22392158 22392682 -160022560 + Tigger1 DNA MER2_type 492 1026 -1392 2758 137 44 16 chr6 22392661 22393164 -160022078 + Tigger1 DNA MER2_type 1859 2375 -43 * 312 133 0 0 chr6 22394666 22394726 -160020516 + (TA)n Simple_repeat Simple_repeat 1 60 0 286 365 52 0 chr6 22396316 22396431 -160018811 - MIR3 SINE MIR -36 172 52 775 181 0 15 chr6 22396484 22396617 -160018625 - FLAM_C SINE Alu 0 133 3 21 0 0 0 chr6 22398040 22398061 -160017181 + AT_rich Low_complexity Low_complexity 1 21 0 616 277 38 50 chr6 22398442 22398533 -160016709 - MIR SINE MIR -26 236 145 2370 74 0 7 chr6 22398533 22398829 -160016413 - AluSc SINE Alu -15 294 1 616 277 38 50 chr6 22398829 22398975 -160016267 - MIR SINE MIR -117 145 2 248 255 117 32 chr6 22399495 22399589 -160015653 - L2 LINE L2 -1 3271 3170 195 289 214 38 chr6 22400080 22400239 -160015003 + MER5A DNA MER1_type 2 188 -1 243 283 183 52 chr6 22400638 22400829 -160014413 - MIR SINE MIR 0 262 47 1711 154 7 20 chr6 22402354 22402652 -160012590 + AluJb SINE Alu 6 299 -13 2102 123 14 0 chr6 22402686 22402979 -160012263 - AluSg SINE Alu -13 297 1 2014 151 0 3 chr6 22403217 22403515 -160011727 - AluSx SINE Alu -15 297 1 609 170 0 0 chr6 22403537 22403637 -160011605 - FLAM_C SINE Alu -25 118 19 2878 0 0 0 chr6 22404027 22404335 -160010907 - AluYa5 SINE Alu -3 308 1 413 315 21 13 chr6 22404783 22404862 -160010380 - L1MC4a LINE L1 -1 7807 7730 1929 151 13 10 chr6 22404862 22405173 -160010069 - AluJb SINE Alu 0 312 1 413 315 21 13 chr6 22405173 22405331 -160009911 - L1MC4a LINE L1 -78 7730 7568 378 325 8 8 chr6 22405673 22405799 -160009443 + MER5A DNA MER1_type 36 161 -28 360 164 0 0 chr6 22406738 22406805 -160008437 + (CA)n Simple_repeat Simple_repeat 2 68 0 338 269 17 42 chr6 22407286 22407405 -160007837 - L1MCa LINE L1 -4859 1681 1566 297 75 0 0 chr6 22407407 22407447 -160007795 + (A)n Simple_repeat Simple_repeat 1 40 0 266 215 93 19 chr6 22407459 22407566 -160007676 - L1MCa LINE L1 -4853 1687 1573 504 232 57 23 chr6 22407687 22407864 -160007378 - L1MCa LINE L1 -5354 1367 1185 463 229 101 9 chr6 22407894 22408003 -160007239 + FLAM_A SINE Alu 1 119 -14 880 296 52 16 chr6 22408041 22408426 -160006816 - L1MCa LINE L1 -5962 759 361 2081 106 14 0 chr6 22408440 22408723 -160006519 - AluSx SINE Alu -25 287 1 282 56 0 0 chr6 22409139 22409175 -160006067 + (CA)n Simple_repeat Simple_repeat 1 36 0 1289 163 9 13 chr6 22409261 22409494 -160005748 + MER46A DNA MER2_type 5 236 0 597 293 95 36 chr6 22410302 22410524 -160004718 + L2 LINE L2 2857 3091 -222 380 224 0 0 chr6 22410532 22410608 -160004634 - AluJ/FLAM SINE Alu -226 76 1 239 162 0 0 chr6 22410617 22410654 -160004588 + Tigger5 DNA MER2_type 2264 2300 -23 484 273 163 29 chr6 22410659 22410672 -160004570 + L2 LINE L2 3073 3083 -230 2301 86 10 3 chr6 22410672 22410974 -160004268 - AluSp SINE Alu -9 304 1 484 273 163 29 chr6 22410974 22411169 -160004073 + L2 LINE L2 3083 3309 -4 261 0 0 0 chr6 22411170 22411199 -160004043 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 2367 98 10 65 chr6 22411304 22411386 -160003856 - MER47A DNA MER2_type -1957 366 281 2039 170 0 0 chr6 22411386 22411698 -160003544 + AluJb SINE Alu 1 312 0 2367 98 10 65 chr6 22411698 22412002 -160003240 - MER47A DNA MER2_type -2042 281 1 1841 173 3 13 chr6 22412088 22412395 -160002847 - AluJo SINE Alu -8 304 1 243 215 0 0 chr6 22413490 22413555 -160001687 + (TG)n Simple_repeat Simple_repeat 2 66 0 284 353 127 46 chr6 22413641 22413879 -160001363 - L2 LINE L2 -4 3268 2996 1816 160 21 0 chr6 22413879 22414161 -160001081 - AluSx SINE Alu -24 288 1 284 353 127 46 chr6 22414161 22414245 -160000997 - L2 LINE L2 -276 2996 2920 1792 77 5 0 chr6 22414280 22414500 -160000742 - AluSp SINE Alu -91 222 2 2160 112 10 16 chr6 22414761 22415075 -160000167 + AluSx SINE Alu 1 312 0 2656 55 0 0 chr6 22416024 22416335 -159998907 - AluY SINE Alu 0 311 1 23 0 0 0 chr6 22417476 22417499 -159997743 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 22418440 22418462 -159996780 + AT_rich Low_complexity Low_complexity 1 22 0 333 253 11 0 chr6 22420185 22420276 -159994966 + MER65A LTR ERV1 341 432 -13 198 0 0 0 chr6 22421086 22421108 -159994134 + (A)n Simple_repeat Simple_repeat 1 22 0 2202 120 7 0 chr6 22421768 22422067 -159993175 + AluSx SINE Alu 3 303 -9 203 278 0 83 chr6 22423146 22423218 -159992024 + L2 LINE L2 3202 3267 -5 257 209 124 48 chr6 22424091 22424196 -159991046 - MIR SINE MIR -13 249 137 910 152 93 0 chr6 22424208 22424359 -159990883 - FAM SINE Alu -10 165 1 200 293 108 95 chr6 22424492 22424724 -159990518 + L2 LINE L2 3032 3266 -6 3006 121 4 22 chr6 22425203 22425564 -159989678 + L1PA13 LINE L1 5678 6029 -134 2577 68 0 0 chr6 22425564 22425875 -159989367 + AluY SINE Alu 1 311 0 3006 121 4 22 chr6 22425875 22426001 -159989241 + L1PA13 LINE L1 6029 6156 -7 5374 100 36 8 chr6 22428023 22428886 -159986356 + L1PA13 LINE L1 5276 6162 -1 1421 201 32 18 chr6 22429107 22429385 -159985857 + AluJo SINE Alu 1 282 -30 255 125 0 0 chr6 22429391 22429431 -159985811 + (GGGGA)n Simple_repeat Simple_repeat 5 44 0 263 246 82 0 chr6 22429433 22429494 -159985748 + AluJ/FRAM SINE Alu 217 282 -20 234 0 0 0 chr6 22429496 22429522 -159985720 + (GGGGA)n Simple_repeat Simple_repeat 4 29 0 1337 202 48 10 chr6 22431016 22431389 -159983853 - MLT1C LTR MaLR 0 467 1 3789 214 113 44 chr6 22431389 22432233 -159983009 - L1M4c LINE L1 -4098 2548 1764 1947 174 0 0 chr6 22432233 22432537 -159982705 - AluJb SINE Alu -8 304 1 3789 214 113 44 chr6 22432537 22433170 -159982072 - L1M4c LINE L1 -4882 1764 969 2367 143 28 23 chr6 22433195 22433622 -159981620 - Tigger2a DNA MER2_type -5 429 1 3713 227 15 40 chr6 22433622 22434571 -159980671 - L1M4c LINE L1 -5610 932 8 2131 109 3 3 chr6 22434910 22435227 -159980015 - AluSg SINE Alu 0 310 1 976 68 0 0 chr6 22437053 22437171 -159978071 + AluSp/q SINE Alu 179 296 -17 349 263 0 0 chr6 22437228 22437304 -159977938 + MIR SINE MIR 187 262 0 1963 151 0 0 chr6 22437685 22437983 -159977259 - AluJb SINE Alu -14 298 1 533 274 103 45 chr6 22438119 22438522 -159976720 - MLT1J LTR MaLR -41 470 1 1875 177 0 0 chr6 22438775 22439085 -159976157 + AluJo SINE Alu 1 310 -2 1945 162 32 0 chr6 22439954 22440331 -159974911 - L1MC1 LINE L1 -174 6159 5771 1853 220 63 18 chr6 22440592 22441146 -159974096 - L1ME3 LINE L1 -2 6160 5582 467 327 0 36 chr6 22441483 22441651 -159973591 + MIR3 SINE MIR 40 201 -7 34 83 0 9 chr6 22441651 22441669 -159973573 + AT_rich Low_complexity Low_complexity 1 18 -89 1792 168 0 17 chr6 22441669 22441960 -159973282 + AluJo SINE Alu 1 286 -26 34 83 0 9 chr6 22441960 22442049 -159973193 + AT_rich Low_complexity Low_complexity 18 107 0 29 47 0 0 chr6 22443799 22443842 -159971400 + AT_rich Low_complexity Low_complexity 1 43 0 2197 124 3 0 chr6 22443851 22444149 -159971093 - AluSx SINE Alu -13 299 1 336 186 12 0 chr6 22444149 22444235 -159971007 - Charlie2 DNA MER1_type -354 2508 2422 216 158 0 0 chr6 22444267 22444324 -159970918 + (TA)n Simple_repeat Simple_repeat 1 57 0 2423 46 0 0 chr6 22444326 22444606 -159970636 - AluY SINE Alu -22 289 10 260 131 98 0 chr6 22444632 22444693 -159970549 - Charlie2 DNA MER1_type -489 2373 2307 2220 98 7 3 chr6 22445638 22445934 -159969308 + AluSg SINE Alu 1 297 -13 1591 184 30 0 chr6 22446127 22446434 -159968808 - AluJb SINE Alu 0 318 4 225 250 0 0 chr6 22446629 22446701 -159968541 + A-rich Low_complexity Low_complexity 1 72 0 23 0 0 0 chr6 22447320 22447343 -159967899 + AT_rich Low_complexity Low_complexity 1 23 0 2226 98 0 0 chr6 22447517 22447804 -159967438 + AluSx SINE Alu 1 287 -25 192 263 70 0 chr6 22448157 22448214 -159967028 + MIR SINE MIR 172 232 -30 1328 204 171 67 chr6 22448387 22449058 -159966184 - LTR1B LTR ERV1 -85 741 1 704 197 13 4 chr6 22449169 22449347 -159965895 - L1MA6 LINE L1 -2 6295 6120 2280 107 0 3 chr6 22449359 22449669 -159965573 - AluSq SINE Alu 0 313 5 882 158 0 102 chr6 22449716 22449893 -159965349 + FRAM SINE Alu 1 158 -18 22 0 0 0 chr6 22450719 22450741 -159964501 + AT_rich Low_complexity Low_complexity 1 22 0 1399 174 114 23 chr6 22450926 22451311 -159963931 - MER95 LTR ERV -10 421 2 2089 122 27 7 chr6 22451341 22451635 -159963607 - AluSx SINE Alu -12 300 1 253 279 20 102 chr6 22451770 22451859 -159963383 + MIR SINE MIR 13 87 -175 1619 204 3 20 chr6 22451859 22452163 -159963079 - AluJb SINE Alu -13 299 1 253 279 20 102 chr6 22452163 22452220 -159963022 + MIR SINE MIR 87 147 -115 333 0 0 0 chr6 22452261 22452298 -159962944 + (TG)n Simple_repeat Simple_repeat 2 38 0 1150 162 40 5 chr6 22452298 22452520 -159962722 - MLT2B2 LTR ERVL -285 230 1 756 241 122 65 chr6 22452520 22452719 -159962523 - MLT1I LTR MaLR -7 402 179 2183 110 0 31 chr6 22452719 22453036 -159962206 - AluSc SINE Alu -2 307 1 756 241 122 65 chr6 22453036 22453129 -159962113 - MLT1I LTR MaLR -230 179 93 228 225 0 56 chr6 22453880 22453969 -159961273 - L1ME1 LINE L1 -25 6141 6058 23 0 0 0 chr6 22454016 22454039 -159961203 + AT_rich Low_complexity Low_complexity 1 23 0 2301 122 0 0 chr6 22454039 22454350 -159960892 + AluSx SINE Alu 1 311 -1 1141 137 113 101 chr6 22455217 22455506 -159959736 + L1MB3 LINE L1 5838 6122 -58 2237 115 3 0 chr6 22455506 22455810 -159959432 + AluSx SINE Alu 3 307 -5 698 199 0 15 chr6 22455814 22455945 -159959297 + FLAM_A SINE Alu 2 130 -3 1141 137 113 101 chr6 22455945 22455987 -159959255 + L1MB3 LINE L1 6124 6178 -2 1249 169 55 128 chr6 22456102 22456445 -159958797 - AluYb8 SINE Alu 0 318 1 1873 173 0 13 chr6 22456698 22457005 -159958237 + AluJb SINE Alu 5 307 -5 1439 149 39 57 chr6 22457009 22457344 -159957898 + L1MB8 LINE L1 5834 6162 -16 383 98 148 0 chr6 22457586 22457647 -159957595 - U6 snRNA snRNA -37 70 1 2067 129 23 0 chr6 22458275 22458578 -159956664 + AluSx SINE Alu 1 310 -2 13109 121 74 10 chr6 22458668 22460916 -159954326 - Tigger1 DNA MER2_type 0 2418 26 304 218 161 65 chr6 22461997 22462121 -159953121 - MIR SINE MIR -16 246 111 2395 94 3 0 chr6 22462407 22462716 -159952526 + AluSx SINE Alu 1 310 -2 281 200 27 0 chr6 22463294 22463369 -159951873 + CT-rich Low_complexity Low_complexity 2 78 0 246 62 0 0 chr6 22463741 22463773 -159951469 + (A)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr6 22466729 22466753 -159948489 + AT_rich Low_complexity Low_complexity 1 24 0 1897 156 3 3 chr6 22466783 22467078 -159948164 + AluSx SINE Alu 1 295 -17 948 118 16 0 chr6 22467301 22467428 -159947814 + AluSx SINE Alu 1 129 -183 234 222 0 0 chr6 22467429 22467483 -159947759 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 1400 109 0 0 chr6 22467487 22467671 -159947571 + AluSx SINE Alu 127 310 -2 1680 166 35 31 chr6 22468760 22469049 -159946193 + AluJo SINE Alu 1 290 -22 188 83 0 28 chr6 22470360 22470396 -159944846 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 1326 150 28 156 chr6 22471234 22471587 -159943655 + AluYa5 SINE Alu 1 308 -3 409 289 31 8 chr6 22471774 22471968 -159943274 - MIR SINE MIR -5 257 2 388 368 64 23 chr6 22472146 22472586 -159942656 - L2 LINE L2 -901 2413 1956 197 214 0 0 chr6 22472736 22472778 -159942464 + L2 LINE L2 3230 3271 -42 714 233 26 69 chr6 22473080 22473312 -159941930 - MIR SINE MIR -9 253 32 3631 146 33 8 chr6 22473540 22474211 -159941031 + L1MA4 LINE L1 5602 6289 -11 2432 74 3 0 chr6 22474879 22475175 -159940067 + AluY SINE Alu 1 297 -14 2256 89 0 20 chr6 22475175 22475477 -159939765 + AluY SINE Alu 1 297 -14 1343 234 163 18 chr6 22475976 22476417 -159938825 - MLT1J LTR MaLR -6 505 1 223 93 47 0 chr6 22477360 22477403 -159937839 + CT-rich Low_complexity Low_complexity 4 48 0 613 142 75 8 chr6 22477464 22477584 -159937658 - L1MA3 LINE L1 -6 6299 6172 1166 274 87 56 chr6 22477890 22478375 -159936867 - MLT1J LTR MaLR -11 500 1 2276 88 3 29 chr6 22478399 22478706 -159936536 + AluY SINE Alu 1 299 -12 2140 104 0 64 chr6 22479722 22480048 -159935194 + AluSx SINE Alu 1 305 -7 399 249 258 65 chr6 22480166 22480207 -159935035 - MIR SINE MIR -1 261 229 267 103 0 0 chr6 22480207 22480246 -159934996 + (TA)n Simple_repeat Simple_repeat 2 40 0 399 249 258 65 chr6 22480246 22480421 -159934821 - MIR SINE MIR -33 229 3 573 15 0 0 chr6 22480684 22480750 -159934492 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 191 125 175 0 chr6 22481307 22481347 -159933895 + L2 LINE L2 3221 3267 -5 34 42 0 0 chr6 22481914 22481962 -159933280 + AT_rich Low_complexity Low_complexity 1 48 0 1902 151 3 0 chr6 22483041 22483325 -159931917 - AluSx SINE Alu -26 286 2 2247 99 3 0 chr6 22484530 22484844 -159930398 - AluSp SINE Alu 0 313 1 736 177 0 57 chr6 22484854 22484995 -159930247 - FLAM_A SINE Alu 0 133 1 458 281 78 54 chr6 22485171 22485413 -159929829 + MIR SINE MIR 3 250 -12 903 144 0 0 chr6 22488443 22488575 -159926667 + FLAM_C SINE Alu 1 132 -1 189 74 0 0 chr6 22489469 22489496 -159925746 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 251 233 17 0 chr6 22490120 22490180 -159925062 - L1ME LINE L1 -389 5775 5715 21 36 0 0 chr6 22490239 22490267 -159924975 + AT_rich Low_complexity Low_complexity 1 28 0 279 298 26 53 chr6 22490475 22490589 -159924653 + MIR3 SINE MIR 92 202 -6 1323 239 123 6 chr6 22491537 22491888 -159923354 + MSTD LTR MaLR 1 392 -4 190 320 40 13 chr6 22492234 22492309 -159922933 + L2 LINE L2 2603 2679 -635 360 267 125 62 chr6 22492311 22492412 -159922830 - MIR SINE MIR 0 262 144 1609 174 49 54 chr6 22492412 22492802 -159922440 - MLT1B LTR MaLR -2 388 1 360 267 125 62 chr6 22492802 22492876 -159922366 - MIR SINE MIR -118 144 76 204 343 41 46 chr6 22492878 22493097 -159922145 + L2 LINE L2 2287 2504 -810 1707 160 7 42 chr6 22493120 22493427 -159921815 - AluJb SINE Alu -6 306 11 5963 101 19 12 chr6 22493549 22494584 -159920658 + L1PA8 LINE L1 5132 6172 0 2238 211 42 39 chr6 22495017 22495639 -159919603 - MLT1E3 LTR MaLR 0 624 1 504 216 17 9 chr6 22495967 22496083 -159919159 - MER94 DNA DNA -13 121 5 666 128 147 0 chr6 22496342 22496451 -159918791 - AluJb SINE Alu -187 125 1 258 313 42 42 chr6 22496516 22496618 -159918624 + MIR SINE MIR 97 201 -61 1940 160 48 3 chr6 22496618 22496950 -159918292 + MER7A DNA MER2_type 2 346 0 258 313 42 42 chr6 22496950 22497013 -159918229 + MIR SINE MIR 200 262 0 243 0 0 0 chr6 22498050 22498077 -159917165 + (CAG)n Simple_repeat Simple_repeat 2 28 0 29 28 0 0 chr6 22498503 22498539 -159916703 + AT_rich Low_complexity Low_complexity 1 36 0 6060 198 64 14 chr6 22499609 22500996 -159914246 - Cheshire DNA MER1_type -83 2337 881 1056 211 5 0 chr6 22501600 22501808 -159913434 + MER3 DNA MER1_type 1 209 0 376 267 30 59 chr6 22502024 22502159 -159913083 - L2 LINE L2 -1 3312 3182 1248 91 151 0 chr6 22502669 22502868 -159912374 - MER30 DNA MER1_type 0 230 2 2033 148 33 12 chr6 22503118 22503448 -159911794 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr6 22504703 22504726 -159910516 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 22505377 22505405 -159909837 + AT_rich Low_complexity Low_complexity 1 28 0 365 240 96 10 chr6 22507030 22507134 -159908108 + MIR SINE MIR 140 252 -10 333 47 0 0 chr6 22507401 22507444 -159907798 + (TG)n Simple_repeat Simple_repeat 2 44 0 186 241 56 19 chr6 22507458 22507512 -159907730 + MIR3 SINE MIR 141 196 -12 1404 213 51 14 chr6 22508871 22509223 -159906019 - MLT1A1 LTR MaLR 0 365 1 295 234 137 48 chr6 22509714 22509838 -159905404 + MIR SINE MIR 1 136 -72 613 260 85 0 chr6 22510060 22510237 -159905005 + MIR SINE MIR 40 231 -31 672 185 76 0 chr6 22511172 22511291 -159903951 - FLAM_A SINE Alu -4 129 2 1038 175 20 55 chr6 22512190 22512390 -159902852 - MER58A DNA MER1_type -31 193 1 2951 165 47 30 chr6 22514340 22514946 -159900296 - LTR27 LTR ERV1 0 636 1 1234 180 0 72 chr6 22515208 22515458 -159899784 + AluJb SINE Alu 58 289 -23 279 284 99 81 chr6 22515541 22515752 -159899490 + MIR SINE MIR 15 229 -33 578 255 103 22 chr6 22515827 22516011 -159899231 - MIR SINE MIR 0 262 64 1613 180 0 76 chr6 22516431 22516748 -159898494 - AluJo SINE Alu -17 295 3 775 156 0 8 chr6 22516809 22516937 -159898305 + FLAM_C SINE Alu 1 127 -16 4707 221 89 31 chr6 22517098 22519422 -159895820 - L1ME1 LINE L1 -48 6118 3663 5794 78 25 1 chr6 22519454 22520246 -159894996 - L1PA10 LINE L1 -1 7605 6795 * 15722 141 7 2 chr6 22520234 22522804 -159892438 - L1PA10 LINE L1 -1627 5957 3375 2244 259 27 54 chr6 22522798 22523832 -159891410 - L1PA10 LINE L1 -4745 2253 1 * 1410 145 8 20 chr6 22523850 22524099 -159891143 - L1PB3 LINE L1 -8 6146 5901 1696 244 109 10 chr6 22524100 22524246 -159890996 - L1ME1 LINE L1 -2470 3676 3546 183 42 0 0 chr6 22524246 22524270 -159890972 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1696 244 109 10 chr6 22524270 22524810 -159890432 - L1ME1 LINE L1 -2600 3546 2922 213 0 36 0 chr6 22526979 22527007 -159888235 + (TTTG)n Simple_repeat Simple_repeat 2 168 0 2244 98 0 0 chr6 22527007 22527292 -159887950 - AluSx SINE Alu -1 312 1 312 183 158 85 chr6 22527635 22527881 -159887361 + HAL1 LINE L1 922 1185 -1322 1083 288 162 34 chr6 22527930 22529029 -159886213 + HAL1 LINE L1 1267 2506 -1 463 44 176 0 chr6 22530028 22530096 -159885146 + MADE1 DNA Mariner 1 80 0 846 192 8 110 chr6 22530532 22530683 -159884559 - L1ME1 LINE L1 -6 6160 6042 1703 172 0 14 chr6 22530683 22531003 -159884239 - AluJo SINE Alu 0 316 1 846 192 8 110 chr6 22531003 22531104 -159884138 - L1ME1 LINE L1 -124 6042 5932 784 259 19 67 chr6 22531160 22531531 -159883711 - L1ME3A LINE L1 -53 6100 5748 1105 75 0 20 chr6 22531539 22531685 -159883557 + AluY SINE Alu 132 274 -37 4059 251 75 39 chr6 22531741 22533851 -159881391 - L1ME3A LINE L1 -475 5678 3494 2460 59 0 13 chr6 22533852 22534155 -159881087 - AluY SINE Alu 0 311 13 232 250 0 0 chr6 22534419 22534487 -159880755 + T-rich Low_complexity Low_complexity 1 68 0 279 348 8 8 chr6 22534496 22534614 -159880628 - MLT1-int LTR MaLR -555 816 699 234 253 67 20 chr6 22534619 22534769 -159880473 - L1ME3A LINE L1 -5002 1308 1152 402 253 11 0 chr6 22534916 22535007 -159880235 + MER5A DNA MER1_type 12 103 -86 296 247 93 83 chr6 22535043 22535233 -159880009 - L1MEd LINE L1 -5104 1015 828 2298 115 50 6 chr6 22535233 22535590 -159879652 + THE1C LTR MaLR 3 375 0 296 247 93 83 chr6 22535590 22535834 -159879408 - L1MEd LINE L1 -5291 828 593 863 259 56 0 chr6 22535943 22536140 -159879102 + MER63A DNA MER1_type 1 208 -2 743 63 0 0 chr6 22536563 22536658 -159878584 + AluY SINE Alu 213 307 -4 1745 157 85 9 chr6 22536771 22537102 -159878140 - L1MC1 LINE L1 -12 6321 5966 368 231 148 0 chr6 22588445 22588553 -159826689 + L2 LINE L2 3189 3312 -1 1464 188 83 24 chr6 22589251 22589587 -159825655 - MSTD LTR MaLR 0 396 41 688 241 36 27 chr6 22589587 22589811 -159825431 + MSTD LTR MaLR 1 226 -170 317 333 38 8 chr6 22590482 22590614 -159824628 - MIR SINE MIR -66 196 61 1750 166 49 3 chr6 22590617 22590901 -159824341 - AluJb SINE Alu -15 297 1 1967 149 0 0 chr6 22591780 22592095 -159823147 - AluSx SINE Alu 0 315 1 2117 82 16 43 chr6 22592102 22592405 -159822837 - AluSc SINE Alu -14 295 1 405 297 43 0 chr6 22592940 22593078 -159822164 + MIR3 SINE MIR 51 194 -14 2249 57 43 33 chr6 22594532 22594832 -159820410 + AluY SINE Alu 1 303 -8 2395 63 0 3 chr6 22594832 22595132 -159820110 + AluY SINE Alu 1 299 -12 4192 138 17 13 chr6 22595150 22595167 -159820075 + L1MB2 LINE L1 5458 5473 -698 225 0 0 0 chr6 22595167 22595192 -159820050 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4192 138 17 13 chr6 22595192 22595882 -159819360 + L1MB2 LINE L1 5473 6168 -3 627 301 26 40 chr6 22595893 22596122 -159819120 + MIR SINE MIR 22 253 -9 671 231 19 39 chr6 22596179 22596439 -159818803 + L1MC5 LINE L1 7659 7913 -48 1311 92 35 0 chr6 22596800 22596973 -159818269 + AluSg/x SINE Alu 133 311 -1 515 172 0 0 chr6 22597027 22597114 -159818128 + FLAM SINE Alu 41 127 -16 1995 130 3 7 chr6 22597129 22597413 -159817829 + AluSx SINE Alu 1 283 -29 252 0 0 0 chr6 22597679 22597707 -159817535 + (T)n Simple_repeat Simple_repeat 1 28 0 333 251 124 66 chr6 22598529 22598770 -159816472 + MIR SINE MIR 3 262 0 323 232 184 14 chr6 22598811 22599018 -159816224 + MER113 DNA MER1_type? 36 277 -244 2417 96 0 3 chr6 22599890 22600203 -159815039 - AluSx SINE Alu 0 312 1 561 227 67 0 chr6 22600207 22600357 -159814885 - L1MB4 LINE L1 -118 6062 5903 308 220 242 0 chr6 22600617 22600708 -159814534 + L2 LINE L2 3197 3309 -4 574 250 115 48 chr6 22600924 22601189 -159814053 + L1ME4a LINE L1 5692 5993 -128 2131 135 0 10 chr6 22601189 22601500 -159813742 + AluJb SINE Alu 1 308 -4 574 250 115 48 chr6 22601500 22601626 -159813616 + L1ME4a LINE L1 5993 6109 -12 368 294 97 59 chr6 22602108 22602352 -159812890 + MIR SINE MIR 3 262 0 660 131 65 0 chr6 22602393 22602500 -159812742 + FLAM_A SINE Alu 20 133 -9 27 0 0 0 chr6 22604152 22604179 -159811063 + AT_rich Low_complexity Low_complexity 1 27 0 352 347 8 16 chr6 22604374 22604498 -159810744 + L2 LINE L2 2578 2700 -614 294 362 11 32 chr6 22604547 22604641 -159810601 + L2 LINE L2 3102 3193 -79 222 62 0 0 chr6 22605475 22605507 -159809735 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 2025 119 18 0 chr6 22605507 22605784 -159809458 - AluSg SINE Alu -28 282 1 580 268 176 35 chr6 22606209 22606376 -159808866 - L1ME4a LINE L1 -35 6086 5944 2184 89 7 7 chr6 22606376 22606667 -159808575 - AluSg SINE Alu -19 291 1 580 268 176 35 chr6 22606667 22606981 -159808261 - L1ME4a LINE L1 -177 5944 5537 338 306 0 37 chr6 22606987 22607121 -159808121 - L1ME4a LINE L1 -2322 3824 3696 187 320 31 41 chr6 22607347 22607444 -159807798 - MIR SINE MIR -145 117 22 1899 127 7 29 chr6 22607624 22607932 -159807310 + AluJo SINE Alu 1 301 -11 394 286 141 42 chr6 22608023 22608264 -159806978 - L1ME4a LINE L1 -2705 3441 3177 31 26 0 0 chr6 22608346 22608384 -159806858 + AT_rich Low_complexity Low_complexity 1 38 0 284 333 114 8 chr6 22608729 22608852 -159806390 - L2 LINE L2 -10 3303 3168 2036 91 0 0 chr6 22608952 22609204 -159806038 - AluSx SINE Alu -60 252 1 207 100 0 0 chr6 22609870 22609900 -159805342 + (CA)n Simple_repeat Simple_repeat 2 31 0 325 308 0 0 chr6 22610604 22610682 -159804560 - MER2 DNA MER2_type 0 345 268 931 170 48 0 chr6 22610768 22610933 -159804309 - MER2 DNA MER2_type -172 173 1 1832 236 63 31 chr6 22611174 22611749 -159803493 + MLT1E LTR MaLR 1 593 0 329 295 68 17 chr6 22611762 22611999 -159803243 + L1ME LINE L1 4814 5062 -1084 768 266 19 62 chr6 22612144 22612167 -159803075 + L1ME LINE L1 5260 5282 -884 1797 158 0 61 chr6 22612167 22612292 -159802950 + AluJo SINE Alu 1 132 -180 2350 113 0 0 chr6 22612292 22612602 -159802640 + AluSx SINE Alu 1 310 -2 1797 158 0 61 chr6 22612602 22612805 -159802437 + AluJo SINE Alu 132 309 -3 768 266 19 62 chr6 22612805 22612894 -159802348 + L1ME LINE L1 5282 5373 -793 198 103 0 0 chr6 22612894 22612923 -159802319 + (TA)n Simple_repeat Simple_repeat 2 30 0 768 266 19 62 chr6 22612923 22613255 -159801987 + L1ME LINE L1 5373 5683 -483 2261 102 0 13 chr6 22615875 22616189 -159799053 + AluSg SINE Alu 1 310 0 647 250 88 20 chr6 22616748 22616952 -159798290 - MIR SINE MIR -42 220 3 569 303 58 33 chr6 22617681 22617922 -159797320 + L2 LINE L2 2569 2815 -499 452 219 164 64 chr6 22617950 22618169 -159797073 - L1ME LINE L1 -331 5790 5550 1073 178 8 54 chr6 22618767 22619009 -159796233 - AluJo SINE Alu -6 306 76 2566 112 3 11 chr6 22619282 22619649 -159795593 + THE1B LTR MaLR 1 364 0 2045 132 0 7 chr6 22619674 22619962 -159795280 - AluSx SINE Alu -21 291 6 22 0 0 0 chr6 22621525 22621547 -159793695 + AT_rich Low_complexity Low_complexity 1 22 0 622 300 42 6 chr6 22622234 22622434 -159792808 - MIR SINE MIR -54 208 3 952 222 36 13 chr6 22623188 22623413 -159791829 - MIR SINE MIR -19 243 14 258 285 110 89 chr6 22623427 22623673 -159791569 + L2 LINE L2 3017 3267 -5 2142 122 6 6 chr6 22625340 22625651 -159789591 - AluSq SINE Alu -2 311 1 211 182 0 0 chr6 22626318 22626351 -159788891 + polypyrimidine Low_complexity Low_complexity 3 35 0 1560 175 16 62 chr6 22626357 22626677 -159788565 - AluJo SINE Alu -6 306 2 1349 194 121 59 chr6 22627750 22628172 -159787070 - MLT1D LTR MaLR -57 448 1 333 264 69 129 chr6 22628582 22628900 -159786342 + MLT1H LTR MaLR 124 422 -127 348 24 0 0 chr6 22629036 22629077 -159786165 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1068 244 119 44 chr6 22629077 22629596 -159785646 - L2 LINE L2 -13 3300 2736 2230 184 60 7 chr6 22629604 22630142 -159785100 - L1MB4 LINE L1 -1 6179 5614 226 239 0 0 chr6 22630144 22630190 -159785052 - L2 LINE L2 -565 2749 2704 549 281 80 5 chr6 22630638 22630837 -159784405 - MIR SINE MIR -11 251 38 29 47 0 0 chr6 22631226 22631269 -159783973 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr6 22631312 22631335 -159783907 + AT_rich Low_complexity Low_complexity 1 23 0 1833 162 0 19 chr6 22631888 22632196 -159783046 + AluJb SINE Alu 1 302 -10 541 241 122 82 chr6 22632267 22632586 -159782656 + MLT1I LTR MaLR 69 400 -9 235 339 54 8 chr6 22632876 22633006 -159782236 + LTR67 LTR ERVL 97 232 -325 324 251 105 47 chr6 22633027 22633218 -159782024 + LTR67 LTR ERVL 356 557 0 242 236 69 97 chr6 22633286 22633329 -159781913 + L2 LINE L2 3136 3179 -134 2125 167 3 21 chr6 22633329 22633701 -159781541 - MLT1A1 LTR MaLR 0 365 1 242 236 69 97 chr6 22633701 22633801 -159781441 + L2 LINE L2 3179 3275 -38 434 213 37 9 chr6 22633815 22633923 -159781319 + MER94 DNA DNA 1 111 -23 261 240 53 13 chr6 22634797 22634872 -159780370 + MIR SINE MIR 185 262 0 681 287 30 0 chr6 22636227 22636394 -159778848 - MIR SINE MIR -90 172 1 1156 224 53 0 chr6 22636421 22636666 -159778576 - AluJo SINE Alu -17 295 38 1054 79 7 0 chr6 22636768 22636920 -159778322 + MER4D LTR ERV1 176 328 -544 2242 99 0 3 chr6 22636921 22637214 -159778028 - AluSx SINE Alu -14 298 7 1806 137 7 52 chr6 22637383 22637690 -159777552 - AluJb SINE Alu -19 293 1 1404 179 16 35 chr6 22639586 22639904 -159775338 - MER33 DNA MER1_type 0 324 13 478 152 31 96 chr6 22639996 22640133 -159775109 + MIR3 SINE MIR 74 202 -6 330 281 106 55 chr6 22640649 22640848 -159774394 - L1ME LINE L1 -645 5476 5268 306 91 0 0 chr6 22641495 22641539 -159773703 + L1MB1 LINE L1 6120 6163 -5 2306 93 3 3 chr6 22643089 22643390 -159771852 - AluSq SINE Alu -10 303 3 201 273 191 9 chr6 22644327 22644437 -159770805 + MIR3 SINE MIR 67 196 -12 21 75 0 15 chr6 22644695 22644727 -159770515 + AT_rich Low_complexity Low_complexity 1 32 -34 2949 6 0 0 chr6 22644727 22645045 -159770197 - AluYb8 SINE Alu 0 318 1 21 75 0 15 chr6 22645045 22645079 -159770163 + AT_rich Low_complexity Low_complexity 32 66 0 1869 158 0 22 chr6 22645536 22645847 -159769395 - AluJo SINE Alu -8 304 1 204 97 0 0 chr6 22646030 22646061 -159769181 + (GA)n Simple_repeat Simple_repeat 2 32 0 213 91 91 23 chr6 22646245 22646289 -159768953 - MIR3 SINE MIR -49 159 113 1166 179 133 60 chr6 22646594 22646963 -159768279 - MSTD LTR MaLR 0 396 1 675 165 0 0 chr6 22647657 22647772 -159767470 - FRAM SINE Alu -2 174 60 23 0 0 0 chr6 22647773 22647796 -159767446 + AT_rich Low_complexity Low_complexity 1 23 0 2091 138 0 0 chr6 22647897 22648188 -159767054 - AluSx SINE Alu -21 291 1 1843 164 4 0 chr6 22648199 22648535 -159766707 - AluJb SINE Alu 0 337 1 2373 89 0 0 chr6 22649603 22649895 -159765347 + AluSx SINE Alu 3 294 -18 300 53 0 0 chr6 22651243 22651281 -159763961 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 255 125 0 0 chr6 22653715 22653763 -159761479 + L1MC3 LINE L1 7738 7785 0 21 0 0 0 chr6 22655072 22655093 -159760149 + AT_rich Low_complexity Low_complexity 1 21 0 1378 171 4 61 chr6 22655727 22655904 -159759338 - AluJo SINE Alu -8 304 147 1988 160 3 6 chr6 22655904 22656217 -159759025 - AluSx SINE Alu 0 312 1 1378 171 4 61 chr6 22656217 22656319 -159758923 - AluJo SINE Alu -165 147 41 1219 87 35 23 chr6 22656373 22656546 -159758696 - AluSg/x SINE Alu -5 307 133 273 259 25 0 chr6 22656925 22657006 -159758236 - L1MC5 LINE L1 -64 7897 7815 192 217 130 54 chr6 22659544 22659636 -159755606 + MIR SINE MIR 105 203 -59 407 51 0 17 chr6 22662510 22662569 -159752673 + (TG)n Simple_repeat Simple_repeat 1 58 0 436 245 40 31 chr6 22662696 22662857 -159752385 + MIR SINE MIR 3 161 -62 1719 192 23 0 chr6 22663802 22664104 -159751138 - AluJb SINE Alu -3 309 1 256 335 28 84 chr6 22664433 22664612 -159750630 + L2 LINE L2 3099 3267 -5 264 282 94 31 chr6 22664839 22665041 -159750201 + MER20B DNA MER1_type 5 219 0 2770 48 11 3 chr6 22665072 22665424 -159749818 - THE1A LTR MaLR 0 355 1 556 299 128 80 chr6 22665433 22665848 -159749394 + L2 LINE L2 2836 3270 -2 591 237 182 40 chr6 22666098 22666351 -159748891 + MER5C DNA MER1_type 1 289 -35 334 233 69 111 chr6 22668468 22668657 -159746585 + MIR SINE MIR 70 250 -12 1757 153 3 66 chr6 22668800 22669133 -159746109 + AluJb SINE Alu 1 312 0 1197 190 9 0 chr6 22669999 22670210 -159745032 + AluJo SINE Alu 85 297 -15 2516 59 0 3 chr6 22670865 22671169 -159744073 + AluY SINE Alu 1 303 -8 21 57 0 0 chr6 22673041 22673076 -159742166 + AT_rich Low_complexity Low_complexity 1 35 0 2154 110 0 20 chr6 22673442 22673742 -159741500 - AluSx SINE Alu -18 294 1 2268 67 0 3 chr6 22674151 22674454 -159740788 - AluY SINE Alu 0 302 1 246 367 46 0 chr6 22676683 22676792 -159738450 - L2 LINE L2 -3 3269 3156 181 219 0 0 chr6 22676896 22676928 -159738314 - L2 LINE L2 -90 3182 3151 222 37 0 0 chr6 22677558 22677585 -159737657 + (T)n Simple_repeat Simple_repeat 1 27 0 669 281 45 10 chr6 22678323 22678522 -159736720 + MIR SINE MIR 45 250 -12 2064 95 7 52 chr6 22679034 22679339 -159735903 + AluSc SINE Alu 1 291 -18 1169 156 6 0 chr6 22679808 22679988 -159735254 - AluJo SINE Alu -131 181 1 1058 177 0 21 chr6 22682567 22682753 -159732489 + MLT1D LTR MaLR 2 183 -322 1552 113 61 0 chr6 22682763 22683012 -159732230 + AluSx SINE Alu 59 320 0 1046 211 95 9 chr6 22683016 22683248 -159731994 + MLT1D LTR MaLR 248 499 -6 273 362 80 6 chr6 22683972 22684135 -159731107 - MIR SINE MIR -9 253 79 578 235 74 19 chr6 22684369 22684531 -159730711 - MIR SINE MIR -44 218 48 2312 50 18 0 chr6 22685144 22685467 -159729775 - AluY SINE Alu 0 328 1 715 170 177 0 chr6 22686576 22686723 -159728519 + MER69A DNA AcHobo 5 177 0 401 270 54 0 chr6 22687088 22687199 -159728043 - L2 LINE L2 0 3272 3156 202 332 145 31 chr6 22687711 22687904 -159727338 + L2 LINE L2 2467 2681 -633 2150 125 0 0 chr6 22688627 22688922 -159726320 - AluSx SINE Alu -17 295 1 2284 90 0 19 chr6 22689880 22690190 -159725052 - AluSq SINE Alu -9 304 1 1900 164 3 3 chr6 22690456 22690768 -159724474 - AluJo SINE Alu 0 312 1 205 339 0 37 chr6 22691421 22691530 -159723712 + CT-rich Low_complexity Low_complexity 4 108 0 526 281 109 34 chr6 22691941 22692315 -159722927 + MLT1I LTR MaLR 1 449 -1 342 0 0 0 chr6 22692414 22692452 -159722790 + (TG)n Simple_repeat Simple_repeat 2 39 0 2007 226 145 15 chr6 22692512 22693131 -159722111 - L1ME3A LINE L1 0 6170 5461 402 335 70 10 chr6 22693231 22693431 -159721811 - MIR SINE MIR -31 231 20 210 143 0 0 chr6 22693642 22693677 -159721565 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 251 261 29 14 chr6 22693960 22694029 -159721213 + GA-rich Low_complexity Low_complexity 5 74 0 492 208 69 28 chr6 22694029 22694173 -159721069 + L1MA9 LINE L1 6125 6274 -38 2042 220 69 8 chr6 22694210 22694688 -159720554 + MER119 DNA MER1_type 17 523 -60 5368 217 30 15 chr6 22695876 22697247 -159717995 + L1MB4 LINE L1 4089 5490 -690 3790 153 32 7 chr6 22697243 22698199 -159717043 - L1PA16 LINE L1 -547 5619 4645 * 3609 104 17 10 chr6 22698204 22698724 -159716518 + L1PA16 LINE L1 5643 6166 0 3078 162 36 5 chr6 22698725 22699281 -159715961 + L1MB4 LINE L1 5486 6058 -122 193 253 33 77 chr6 22699330 22699421 -159715821 - L2 LINE L2 -498 2816 2730 913 45 0 9 chr6 22700598 22700708 -159714534 + AluY SINE Alu 120 228 -83 2189 106 0 3 chr6 22700895 22701177 -159714065 - AluSq SINE Alu -17 296 16 288 288 55 49 chr6 22701193 22701458 -159713784 - L1MC5 LINE L1 -308 7679 7481 261 333 10 10 chr6 22701628 22701724 -159713518 - MER5A DNA MER1_type -68 121 26 8949 169 51 17 chr6 22701971 22702051 -159713191 - L1MC3 LINE L1 -607 7178 7102 8657 108 45 9 chr6 22702051 22703308 -159711934 - HSMAR2 DNA Mariner 0 1302 1 8949 169 51 17 chr6 22703308 22703366 -159711876 - L1MC3 LINE L1 -683 7102 7047 180 77 0 0 chr6 22703366 22703392 -159711850 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 8949 169 51 17 chr6 22703392 22704344 -159710898 - L1MC3 LINE L1 -738 7047 6007 180 0 0 0 chr6 22704344 22704364 -159710878 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8949 169 51 17 chr6 22704364 22704968 -159710274 - L1MC3 LINE L1 -1778 6007 5425 2163 135 0 0 chr6 22705068 22705372 -159709870 + AluSx SINE Alu 1 304 -8 2695 99 31 3 chr6 22706353 22706707 -159708535 - THE1B LTR MaLR 0 364 1 1522 123 176 0 chr6 22708325 22708569 -159706673 + AluSx SINE Alu 1 287 -25 789 202 0 8 chr6 22709205 22709334 -159705908 + FLAM_C SINE Alu 2 129 -14 583 78 31 31 chr6 22709334 22709463 -159705779 + (TA)n Simple_repeat Simple_repeat 1 129 0 297 333 89 15 chr6 22709545 22709680 -159705562 - L2 LINE L2 -1 3271 3127 2032 145 0 0 chr6 22709978 22710274 -159704968 - AluSx SINE Alu -16 296 1 451 272 114 80 chr6 22710419 22710857 -159704385 - MLT1J LTR MaLR -56 455 3 470 233 27 48 chr6 22710994 22711065 -159704177 + MER5B DNA MER1_type 36 107 -71 808 197 34 56 chr6 22711065 22711198 -159704044 - MER5B DNA MER1_type -4 174 44 2297 76 20 0 chr6 22711198 22711499 -159703743 + AluY SINE Alu 1 307 -4 808 197 34 56 chr6 22711499 22711543 -159703699 - MER5B DNA MER1_type -134 44 1 470 233 27 48 chr6 22711543 22711617 -159703625 + MER5B DNA MER1_type 107 178 0 1885 151 3 10 chr6 22712473 22712764 -159702478 - AluJb SINE Alu -23 289 1 545 264 192 6 chr6 22712935 22713117 -159702125 - MIR SINE MIR 0 262 47 219 146 0 24 chr6 22713153 22713195 -159702047 + (GGA)n Simple_repeat Simple_repeat 1 40 0 2260 122 165 5 chr6 22713425 22713794 -159701448 + MSTA LTR MaLR 1 428 0 413 127 70 0 chr6 22714176 22714247 -159700995 + AluJ/FRAM SINE Alu 230 305 -7 335 355 93 23 chr6 22714468 22714727 -159700515 + L2 LINE L2 2926 3202 -70 366 247 21 0 chr6 22716090 22716183 -159699059 - MIR3 SINE MIR -6 202 108 401 294 83 53 chr6 22717156 22717384 -159697858 - MIR SINE MIR -20 242 8 5731 105 13 5 chr6 22717650 22718478 -159696764 + L1PA16 LINE L1 5332 6166 0 2600 60 0 13 chr6 22718591 22718905 -159696337 - AluY SINE Alu -1 310 1 1823 177 16 47 chr6 22719348 22719871 -159695371 + L1MB2 LINE L1 5647 6125 -46 234 143 0 41 chr6 22719923 22719972 -159695270 + L1MB5 LINE L1 6096 6142 -32 513 153 0 0 chr6 22719972 22720044 -159695198 + AluJ/FRAM SINE Alu 221 292 -20 2033 128 4 0 chr6 22720189 22720470 -159694772 - AluSx SINE Alu -13 299 18 2449 42 0 3 chr6 22721357 22721674 -159693568 + AluY SINE Alu 1 316 0 1500 201 108 31 chr6 22721759 22722185 -159693057 - MLT1C LTR MaLR -2 465 17 226 263 81 61 chr6 22722435 22722534 -159692708 - MIR SINE MIR -90 118 18 1721 157 31 20 chr6 22723627 22723920 -159691322 - AluJo SINE Alu -16 296 1 186 336 64 27 chr6 22724384 22724494 -159690748 - MIR SINE MIR -128 134 21 497 337 121 8 chr6 22724505 22724861 -159690381 - L2 LINE L2 -941 2373 1978 220 247 0 110 chr6 22724961 22725034 -159690208 + L2 LINE L2 2244 2308 -1006 1232 206 14 0 chr6 22725330 22725549 -159689693 - MER58A DNA MER1_type -2 222 1 207 139 0 0 chr6 22725763 22725799 -159689443 + (TG)n Simple_repeat Simple_repeat 1 36 0 1595 174 10 41 chr6 22725799 22726093 -159689149 - AluJo SINE Alu -27 285 1 2381 100 3 0 chr6 22726114 22726423 -159688819 - AluSx SINE Alu -2 310 1 2094 113 19 10 chr6 22727716 22728025 -159687217 - AluSx SINE Alu 0 312 1 2241 118 0 0 chr6 22728568 22728873 -159686369 - AluSx SINE Alu -7 305 1 696 167 161 6 chr6 22728880 22729060 -159686182 - L1MD3 LINE L1 0 7995 7788 867 158 12 18 chr6 22730632 22730796 -159684446 + L1MB3 LINE L1 6021 6183 0 253 245 147 59 chr6 22730846 22730948 -159684294 + L2 LINE L2 3183 3293 -20 264 244 126 50 chr6 22734010 22734129 -159681113 + L3 LINE CR1 1375 1502 -75 1937 252 50 33 chr6 22734160 22734380 -159680862 + MLT1E LTR MaLR 2 217 -376 3713 114 32 31 chr6 22734380 22734804 -159680438 + MER41C LTR ERV1 1 423 -131 2049 133 0 41 chr6 22734804 22735121 -159680121 - AluSx SINE Alu -8 304 1 2456 73 0 3 chr6 22735126 22735428 -159679814 - AluY SINE Alu -10 301 1 3713 114 32 31 chr6 22735428 22735550 -159679692 + MER41C LTR ERV1 426 554 0 1937 252 50 33 chr6 22735550 22735908 -159679334 + MLT1E LTR MaLR 217 590 -3 2267 140 25 68 chr6 22737232 22737676 -159677566 - L1MB5 LINE L1 -2 6172 5748 208 353 29 0 chr6 22739553 22739621 -159675621 - L3 LINE CR1 -84 1493 1424 1653 184 110 60 chr6 22739771 22740115 -159675127 - MLT1C LTR MaLR -8 459 87 2165 147 0 0 chr6 22740115 22740427 -159674815 - AluSx SINE Alu 0 312 1 1653 184 110 60 chr6 22740427 22740517 -159674725 - MLT1C LTR MaLR -380 87 3 2196 114 30 0 chr6 22742185 22742484 -159672758 + AluSc SINE Alu 1 308 -1 2231 61 0 31 chr6 22742484 22742805 -159672437 + AluY SINE Alu 1 313 0 798 258 103 66 chr6 22742819 22742893 -159672349 - L1ME4a LINE L1 -11 6110 6040 2319 77 10 17 chr6 22742893 22743191 -159672051 - AluSg1 SINE Alu -13 296 1 798 258 103 66 chr6 22743191 22743542 -159671700 - L1ME4a LINE L1 -81 6040 5669 1513 186 37 77 chr6 22743792 22743982 -159671260 - MLT1B LTR MaLR 0 390 223 2946 138 17 0 chr6 22743982 22744402 -159670840 - MSTC LTR MaLR -1 427 1 1513 186 37 77 chr6 22744402 22744614 -159670628 - MLT1B LTR MaLR -167 223 4 242 214 0 0 chr6 22744765 22744821 -159670421 - HAL1 LINE L1 -2 2505 2450 582 208 150 77 chr6 22744862 22745172 -159670070 - MLT1E1 LTR MaLR -263 330 43 935 259 95 45 chr6 22745479 22745958 -159669284 - HAL1 LINE L1 -973 1534 1026 4288 110 64 0 chr6 22745958 22746533 -159668709 + LTR9 LTR ERV1 1 612 0 935 259 95 45 chr6 22746533 22746567 -159668675 - HAL1 LINE L1 -1481 1026 995 245 343 30 49 chr6 22746701 22746966 -159668276 - HAL1 LINE L1 -2111 396 137 2379 87 0 10 chr6 22749096 22749406 -159665836 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr6 22749505 22749530 -159665712 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 276 81 65 chr6 22749831 22749954 -159665288 + MIR3 SINE MIR 84 208 0 466 178 0 19 chr6 22750990 22751097 -159664145 + CT-rich Low_complexity Low_complexity 2 106 0 887 278 45 36 chr6 22752003 22752548 -159662694 + L1MEc LINE L1 1774 2279 -3936 3646 142 42 30 chr6 22752574 22752776 -159662466 + L1MA7 LINE L1 5620 5818 -473 2246 104 0 3 chr6 22752776 22753083 -159662159 + AluY SINE Alu 2 307 -4 3646 142 42 30 chr6 22753083 22753221 -159662021 + L1MA7 LINE L1 5818 5953 -338 2531 55 0 13 chr6 22753221 22753533 -159661709 + AluY SINE Alu 1 308 -3 3646 142 42 30 chr6 22753533 22753855 -159661387 + L1MA7 LINE L1 5953 6291 0 7286 208 81 76 chr6 22753879 22754371 -159660871 + L1MB8 LINE L1 2983 3471 -2707 2150 115 121 0 chr6 22754371 22754693 -159660549 - MER46B DNA MER2_type 0 236 1 7286 208 81 76 chr6 22754693 22756485 -159658757 + L1MB8 LINE L1 3471 5284 -894 234 0 0 0 chr6 22756485 22756511 -159658731 + (TC)n Simple_repeat Simple_repeat 1 26 0 7286 208 81 76 chr6 22756511 22757405 -159657837 + L1MB8 LINE L1 5284 6172 -6 1878 158 0 11 chr6 22757416 22757726 -159657516 - AluSx SINE Alu 0 307 1 541 307 52 44 chr6 22758523 22758699 -159656543 - MARNA DNA Mariner -17 569 396 1816 122 0 8 chr6 22758699 22758953 -159656289 - AluSg SINE Alu -36 274 23 541 307 52 44 chr6 22758953 22759138 -159656104 - MARNA DNA Mariner -190 396 205 1907 163 0 7 chr6 22759167 22759462 -159655780 - AluJo SINE Alu -19 293 1 180 0 0 0 chr6 22759797 22759817 -159655425 + (TA)n Simple_repeat Simple_repeat 1 20 0 2305 128 6 0 chr6 22759823 22760151 -159655091 - L1PA16 LINE L1 -9 6157 5828 908 202 0 16 chr6 22760152 22760335 -159654907 + L1P4 LINE L1 5611 5790 -376 2229 121 3 0 chr6 22761027 22761333 -159653909 - AluSx SINE Alu -5 307 1 1897 146 7 7 chr6 22762989 22763284 -159651958 - AluJo SINE Alu -17 295 1 199 333 123 0 chr6 22763404 22763485 -159651757 + L2 LINE L2 3206 3296 -17 653 302 27 18 chr6 22763545 22763767 -159651475 + MIR SINE MIR 5 228 -34 797 154 79 106 chr6 22764757 22765063 -159650179 + MLT1C LTR MaLR 1 269 -198 241 213 0 0 chr6 22765217 22765264 -159649978 - L2 LINE L2 -5 3267 3221 338 307 37 12 chr6 22765274 22765437 -159649805 - L2 LINE L2 -2660 654 488 1000 204 11 11 chr6 22765478 22765664 -159649578 - MER5A DNA MER1_type 0 189 4 1605 159 22 57 chr6 22765695 22766009 -159649233 - AluJo SINE Alu -9 303 1 1828 162 97 43 chr6 22766096 22766466 -159648776 + MLT1B LTR MaLR 1 390 0 248 199 103 73 chr6 22766607 22766743 -159648499 - L1MEd LINE L1 -5932 187 48 370 323 10 0 chr6 22766874 22766973 -159648269 - MIR SINE MIR -59 149 50 1975 138 0 7 chr6 22767042 22767340 -159647902 + AluJb SINE Alu 1 296 -16 23 0 0 0 chr6 22767340 22767363 -159647879 + AT_rich Low_complexity Low_complexity 1 23 0 1802 128 0 36 chr6 22768552 22768868 -159646374 + AluSx SINE Alu 21 326 0 925 157 30 12 chr6 22768873 22769039 -159646203 + L1MB2 LINE L1 6001 6169 -2 272 89 0 22 chr6 22769109 22769154 -159646088 + (TA)n Simple_repeat Simple_repeat 2 45 0 1847 128 53 0 chr6 22770348 22770614 -159644628 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr6 22770615 22770647 -159644595 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7476 59 1 1 chr6 22770950 22772661 -159642581 + L1PA7 LINE L1 4444 6154 0 423 261 157 7 chr6 22772722 22772875 -159642367 - MIR SINE MIR -41 221 46 216 0 0 0 chr6 22772932 22772956 -159642286 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 256 271 14 0 chr6 22773033 22773103 -159642139 + MER63 DNA MER1_type 983 1053 -7 1504 200 77 69 chr6 22773362 22773874 -159641368 + MER39 LTR ERV1 1 666 0 2101 118 6 40 chr6 22773921 22774244 -159640998 - AluSx SINE Alu 0 312 1 26 0 0 0 chr6 22774942 22774968 -159640274 + AT_rich Low_complexity Low_complexity 1 26 0 2308 89 0 0 chr6 22774968 22775259 -159639983 - AluSx SINE Alu -21 291 1 213 196 0 0 chr6 22775890 22775936 -159639306 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2518 74 3 0 chr6 22775980 22776292 -159638950 - AluSp SINE Alu 0 313 1 23 54 0 0 chr6 22776306 22776343 -159638899 + AT_rich Low_complexity Low_complexity 1 37 0 2059 121 30 0 chr6 22776399 22776696 -159638546 - AluSx SINE Alu -6 306 1 277 257 125 28 chr6 22776696 22776840 -159638402 - L1ME4a LINE L1 -1 6120 5963 4903 104 32 96 chr6 22777159 22777712 -159637530 - Tigger3(Golem) DNA MER2_type -2 3027 2440 2184 89 0 7 chr6 22777712 22777993 -159637249 - AluSx SINE Alu -33 279 1 4903 104 32 96 chr6 22777993 22778418 -159636824 - Tigger3(Golem) DNA MER2_type -589 2440 1989 2144 118 3 3 chr6 22778418 22778714 -159636528 - AluSc SINE Alu -13 296 1 4903 104 32 96 chr6 22778714 22779041 -159636201 - Tigger3(Golem) DNA MER2_type -1040 1989 1 298 273 39 47 chr6 22779079 22779207 -159636035 - L2 LINE L2 0 3313 3187 827 261 103 27 chr6 22779207 22779655 -159635587 + L1MC/D LINE L1 5312 5799 -443 2284 110 44 99 chr6 22779704 22779978 -159635264 + LTR23 LTR ERV1 1 289 -148 2149 115 0 7 chr6 22779978 22780274 -159634968 - AluSx SINE Alu -18 294 1 2284 110 44 99 chr6 22780274 22780306 -159634936 + LTR23 LTR ERV1 289 321 -116 2215 90 4 0 chr6 22780306 22780585 -159634657 + AluSp SINE Alu 1 280 -33 194 0 0 37 chr6 22780585 22780612 -159634630 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 2301 98 3 10 chr6 22780621 22780928 -159634314 + AluSx SINE Alu 1 305 -7 2284 110 44 99 chr6 22780928 22781063 -159634179 + LTR23 LTR ERV1 328 429 -8 1262 229 95 23 chr6 22781113 22781486 -159633756 + MER39 LTR ERV1 6 351 -356 201 39 0 0 chr6 22781486 22781512 -159633730 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1262 229 95 23 chr6 22781512 22781576 -159633666 + MER39 LTR ERV1 351 707 0 2209 97 0 3 chr6 22782055 22782364 -159632878 - AluSq SINE Alu -5 308 1 26 23 0 23 chr6 22782432 22782451 -159632791 + AT_rich Low_complexity Low_complexity 1 19 -24 2132 100 0 3 chr6 22782451 22782742 -159632500 + AluSc SINE Alu 1 290 -19 26 23 0 23 chr6 22782742 22782766 -159632476 + AT_rich Low_complexity Low_complexity 19 43 0 274 375 7 7 chr6 22782838 22782974 -159632268 + MIR SINE MIR 109 244 -18 192 77 0 0 chr6 22783576 22783602 -159631640 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 1744 46 0 5 chr6 22784299 22784518 -159630724 + AluY SINE Alu 94 311 0 328 281 44 18 chr6 22785059 22785173 -159630069 - MIR SINE MIR -76 186 70 246 316 31 31 chr6 22785235 22785333 -159629909 - MIR3 SINE MIR -103 105 8 1435 119 0 0 chr6 22786057 22786258 -159628984 - AluJb SINE Alu -16 296 96 2322 69 0 3 chr6 22787954 22788259 -159626983 + AluY SINE Alu 1 304 -7 722 213 103 103 chr6 22788764 22789074 -159626168 + MLT1A2 LTR MaLR 3 312 -62 750 227 0 0 chr6 22789095 22789374 -159625868 + CT-rich Low_complexity Low_complexity 1 279 0 1483 153 40 11 chr6 22789419 22789694 -159625548 - AluJo SINE Alu -17 295 13 369 113 4 0 chr6 22789694 22789766 -159625476 + MSTB2 LTR MaLR 356 438 0 1007 276 98 19 chr6 22790057 22790485 -159624757 - MLT1C LTR MaLR 0 467 6 22 35 0 0 chr6 22790615 22790644 -159624598 + AT_rich Low_complexity Low_complexity 1 29 0 2030 93 4 0 chr6 22790645 22790772 -159624470 - L1PB2 LINE L1 -5 6146 6020 3858 121 32 6 chr6 22790772 22791486 -159623756 - L1PB2 LINE L1 -137 6017 5254 243 0 0 0 chr6 22792688 22792715 -159622527 + (A)n Simple_repeat Simple_repeat 1 27 0 346 277 126 34 chr6 22793213 22793419 -159621823 + MIR SINE MIR 28 252 -10 1176 224 0 9 chr6 22793442 22793665 -159621577 + MER58A DNA MER1_type 1 221 -3 217 320 82 41 chr6 22795171 22795293 -159619949 + L2 LINE L2 3137 3263 -9 417 198 153 45 chr6 22795552 22795663 -159619579 - MLT1C LTR MaLR 0 467 345 4047 103 2 16 chr6 22795668 22796248 -159618994 + L1PA14 LINE L1 5590 6161 0 21 36 0 0 chr6 22796478 22796506 -159618736 + AT_rich Low_complexity Low_complexity 1 28 0 6962 69 0 9 chr6 22796512 22798082 -159617160 + L1PA6 LINE L1 4586 6147 -7 2268 90 0 6 chr6 22798230 22798542 -159616700 + AluSg SINE Alu 1 310 0 856 272 112 21 chr6 22798549 22798880 -159616362 - MLT1C LTR MaLR -104 363 3 2040 115 13 3 chr6 22799470 22799774 -159615468 + AluSq SINE Alu 1 307 -6 666 41 31 0 chr6 22799797 22799895 -159615347 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 274 347 52 36 chr6 22801370 22801563 -159613679 - MIR SINE MIR -2 260 65 1592 185 7 23 chr6 22801657 22801965 -159613277 - AluJo SINE Alu -9 303 1 504 216 230 34 chr6 22802966 22803114 -159612128 - MER63A DNA MER1_type -33 177 1 1973 144 0 3 chr6 22803319 22803632 -159611610 + AluSx SINE Alu 1 312 0 2322 90 0 0 chr6 22804546 22804847 -159610395 + AluSc SINE Alu 1 301 -8 1259 142 9 32 chr6 22805083 22805302 -159609940 + L1MC1 LINE L1 6112 6325 -8 2075 101 25 0 chr6 22805302 22805588 -159609654 - AluY SINE Alu -18 293 1 1569 137 26 99 chr6 22805824 22806167 -159609075 - AluYb8 SINE Alu 0 318 1 2565 133 54 28 chr6 22807229 22807657 -159607585 - LTR32 LTR ERVL -3 468 30 888 228 20 15 chr6 22807675 22807877 -159607365 - HERVL32 LTR ERVL -1 3417 3215 315 239 37 128 chr6 22807959 22807994 -159607248 - PABL_B-int LTR ERV1 -446 6676 6639 1694 166 7 3 chr6 22807994 22808284 -159606958 - AluJb SINE Alu -21 291 1 315 239 37 128 chr6 22808284 22808357 -159606885 - PABL_B-int LTR ERV1 -483 6639 6578 367 313 84 34 chr6 22808390 22808713 -159606529 - PABL_B-int LTR ERV1 -1091 6665 6327 7298 241 60 70 chr6 22809954 22810157 -159605085 - HERVL32 LTR ERVL -205 3213 3009 2236 93 0 3 chr6 22810157 22810469 -159604773 + AluY SINE Alu 1 311 0 7298 241 60 70 chr6 22810469 22810485 -159604757 - HERVL32 LTR ERVL -409 3009 2994 2284 84 0 0 chr6 22810485 22810782 -159604460 + AluSg SINE Alu 1 297 -13 7298 241 60 70 chr6 22810782 22812995 -159602247 - HERVL32 LTR ERVL -424 2994 1274 312 303 49 56 chr6 22813179 22813341 -159601901 - MER5B DNA MER1_type 0 178 18 3616 51 0 7 chr6 22813343 22813794 -159601448 - LTR7 LTR ERV1 -2 448 1 2457 84 48 13 chr6 22813794 22814173 -159601069 - HERVH LTR ERV1 0 7713 7322 1465 115 18 5 chr6 22814171 22814388 -159600854 - HERVH LTR ERV1 -1894 5819 5600 * 4421 142 3 1 chr6 22814389 22815050 -159600192 - HERVH LTR ERV1 -2564 5149 4488 3598 99 0 6 chr6 22815052 22815557 -159599685 - HERVH LTR ERV1 -3720 3993 3492 1014 113 7 0 chr6 22815547 22815697 -159599545 - HERVH LTR ERV1 -4423 3290 3140 * 21467 92 8 7 chr6 22815676 22818666 -159596576 - HERVH LTR ERV1 -4718 2995 1 3455 50 23 7 chr6 22818668 22819109 -159596133 - LTR7 LTR ERV1 -2 448 1 246 331 54 34 chr6 22821455 22821603 -159593639 - L2 LINE L2 -1011 2303 2153 200 35 35 0 chr6 22821672 22821701 -159593541 + (GA)n Simple_repeat Simple_repeat 1 30 0 466 136 0 91 chr6 22822191 22822301 -159592941 + MER53 DNA DNA 1 100 -89 243 61 0 0 chr6 22824407 22824440 -159590802 + (A)n Simple_repeat Simple_repeat 1 33 0 1969 115 3 3 chr6 22824442 22824728 -159590514 + AluSx SINE Alu 1 286 -26 1983 135 0 3 chr6 22825383 22825686 -159589556 + AluSx SINE Alu 1 302 -10 422 305 14 35 chr6 22825875 22826016 -159589226 - MER5A DNA MER1_type -25 164 27 2139 110 7 10 chr6 22826266 22826576 -159588666 - AluSg SINE Alu -1 309 1 322 224 62 95 chr6 22827125 22827304 -159587938 - MER5A DNA MER1_type -7 182 10 1613 152 50 7 chr6 22828393 22828676 -159586566 - AluJo SINE Alu -17 295 1 185 328 34 42 chr6 22829641 22829760 -159585482 - L2 LINE L2 -906 2408 2291 282 345 45 14 chr6 22829763 22829986 -159585256 - L2 LINE L2 -1135 2179 1950 355 278 22 0 chr6 22830144 22830195 -159585047 - L1MC4 LINE L1 -1339 6703 6648 1913 138 10 16 chr6 22830195 22830500 -159584742 - AluSx SINE Alu -9 303 1 355 278 22 0 chr6 22830500 22830538 -159584704 - L1MC4 LINE L1 -1394 6648 6612 1478 157 82 4 chr6 22830759 22831040 -159584202 + AluJb SINE Alu 1 303 -9 705 182 17 62 chr6 22831046 22831089 -159584153 + L1MB4 LINE L1 6013 6056 -124 2215 111 0 0 chr6 22831089 22831395 -159583847 + AluSq SINE Alu 1 306 -7 705 182 17 62 chr6 22831395 22831527 -159583715 + L1MB4 LINE L1 6056 6180 0 551 294 151 35 chr6 22831702 22832213 -159583029 + L2 LINE L2 2690 3223 -49 180 0 0 0 chr6 22832241 22832261 -159582981 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 319 219 110 0 chr6 22832799 22832881 -159582361 - MIR SINE MIR -16 246 156 183 303 20 40 chr6 22832876 22832975 -159582267 - MIR3 SINE MIR -102 106 10 * 207 0 0 0 chr6 22833450 22833473 -159581769 + (A)n Simple_repeat Simple_repeat 1 23 0 1339 190 0 35 chr6 22834215 22834473 -159580769 + AluJb SINE Alu 1 249 -63 2053 185 101 7 chr6 22834785 22835212 -159580030 - MLT1C LTR MaLR 0 467 1 315 0 0 0 chr6 22835288 22835323 -159579919 + (T)n Simple_repeat Simple_repeat 1 35 0 2570 51 0 3 chr6 22837078 22837389 -159577853 - AluY SINE Alu -1 310 1 2177 165 18 48 chr6 22837719 22837843 -159577399 + L1MA10 LINE L1 5782 5908 -426 2409 110 0 0 chr6 22837843 22838153 -159577089 + AluSg SINE Alu 1 310 0 2177 165 18 48 chr6 22838153 22838465 -159576777 + L1MA10 LINE L1 5908 6205 -129 312 218 30 135 chr6 22838774 22838907 -159576335 - MLT1J LTR MaLR -256 180 35 259 103 0 0 chr6 22839012 22839051 -159576191 + Alu SINE Alu 1 39 -262 2290 96 0 0 chr6 22839051 22839352 -159575890 + AluY SINE Alu 11 311 0 183 114 0 0 chr6 22840799 22840834 -159574408 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2300 115 3 0 chr6 22840934 22841246 -159573996 + AluSq SINE Alu 1 313 0 2623 47 0 0 chr6 22841584 22841884 -159573358 + AluY SINE Alu 1 300 -11 193 257 29 43 chr6 22842017 22842087 -159573155 + L2 LINE L2 2575 2643 -671 2201 156 19 6 chr6 22842089 22842449 -159572793 + MLT1A1 LTR MaLR 1 365 0 847 183 27 32 chr6 22843116 22843135 -159572107 + MER5A DNA MER1_type 1 19 -170 2047 157 30 30 chr6 22843135 22843498 -159571744 - THE1B LTR MaLR -1 363 1 847 183 27 32 chr6 22843498 22843664 -159571578 + MER5A DNA MER1_type 19 185 -4 2296 114 3 0 chr6 22843689 22843997 -159571245 + AluSq SINE Alu 1 309 -4 286 267 145 0 chr6 22844366 22844497 -159570745 + MIR SINE MIR 43 192 -70 1068 156 5 26 chr6 22844674 22844866 -159570376 - MER53 DNA DNA 0 189 2 2281 99 0 3 chr6 22844937 22845229 -159570013 + AluSx SINE Alu 1 291 -21 1962 130 10 7 chr6 22846022 22846321 -159568921 - AluSx SINE Alu -12 300 1 1138 74 0 0 chr6 22846321 22846456 -159568786 - AluSq/x SINE Alu -178 135 1 294 279 70 16 chr6 22848496 22848625 -159566617 - MIR SINE MIR -64 198 63 279 263 141 20 chr6 22848886 22848985 -159566257 - L2 LINE L2 -7 3306 3196 343 246 191 83 chr6 22849162 22849549 -159565693 - LTR67 LTR ERVL -14 543 115 2298 101 0 3 chr6 22849714 22850011 -159565231 + AluSc SINE Alu 1 296 -13 359 82 0 33 chr6 22850273 22850334 -159564908 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 527 306 32 96 chr6 22850337 22850651 -159564591 - L2 LINE L2 -1 3271 2978 4140 134 10 5 chr6 22850688 22851316 -159563926 + MER41B LTR ERV1 5 635 0 280 234 109 31 chr6 22851520 22851648 -159563594 - L2 LINE L2 -581 2733 2596 21 23 0 47 chr6 22851694 22851711 -159563531 + AT_rich Low_complexity Low_complexity 1 17 -24 1968 134 3 3 chr6 22851711 22851995 -159563247 + AluSx SINE Alu 1 284 -28 21 23 0 47 chr6 22851995 22852020 -159563222 + AT_rich Low_complexity Low_complexity 17 41 0 229 237 140 21 chr6 22852156 22852249 -159562993 - L2 LINE L2 -961 2353 2250 25 0 0 0 chr6 22852439 22852464 -159562778 + AT_rich Low_complexity Low_complexity 1 25 0 4160 93 4 7 chr6 22853406 22853962 -159561280 + MER41A LTR ERV1 1 554 0 180 111 0 0 chr6 22854723 22854750 -159560492 + (T)n Simple_repeat Simple_repeat 1 27 0 250 294 37 18 chr6 22855615 22855724 -159559518 + MIR SINE MIR 18 128 -80 2483 90 0 0 chr6 22856230 22856541 -159558701 - AluSx SINE Alu -1 311 1 2213 118 0 0 chr6 22857039 22857335 -159557907 - AluY SINE Alu -15 296 1 282 191 238 48 chr6 22858166 22858292 -159556950 + MLT1L LTR MaLR 131 280 -335 349 316 43 11 chr6 22858359 22858546 -159556696 + MLT1L LTR MaLR 410 602 -13 1946 166 7 0 chr6 22858713 22859009 -159556233 + AluJb SINE Alu 1 298 -14 2316 143 50 31 chr6 22859033 22859227 -159556015 + MSTB LTR MaLR 1 190 -236 2462 99 3 0 chr6 22859227 22859539 -159555703 - AluSp SINE Alu 0 313 1 2316 143 50 31 chr6 22859539 22859762 -159555480 + MSTB LTR MaLR 190 426 0 2222 118 0 0 chr6 22860693 22860989 -159554253 - AluSx SINE Alu -16 296 1 753 235 40 10 chr6 22861299 22861499 -159553743 + MIR SINE MIR 36 241 -21 3936 65 2 0 chr6 22861738 22862233 -159553009 + L1PA8 LINE L1 5677 6172 0 379 233 4 41 chr6 22862300 22862415 -159552827 - HAL1b LINE L1 -806 542 444 242 204 146 58 chr6 22862814 22862854 -159552388 - L1ME2 LINE L1 -1 6163 6128 2124 115 0 16 chr6 22862854 22863158 -159552084 + AluSx SINE Alu 1 299 -13 242 204 146 58 chr6 22863158 22863220 -159552022 - L1ME2 LINE L1 -36 6128 6052 1990 96 4 18 chr6 22863231 22863503 -159551739 + AluSx SINE Alu 1 268 -44 236 343 89 7 chr6 22863831 22864134 -159551108 - L1M4 LINE L1 -2017 4129 3802 756 98 106 0 chr6 22864349 22864472 -159550770 + MER85 DNA T2_type 1 136 -3 313 241 27 33 chr6 22864492 22864598 -159550644 + MIR SINE MIR 37 145 -63 2033 121 72 0 chr6 22866702 22866992 -159548250 + AluSx SINE Alu 1 311 -1 832 266 57 4 chr6 22867234 22867478 -159547764 - MIR SINE MIR 0 262 6 31 20 0 20 chr6 22867768 22867785 -159547457 + AT_rich Low_complexity Low_complexity 1 17 -31 1716 94 5 0 chr6 22867785 22867997 -159547245 + AluSp SINE Alu 75 287 -26 31 20 0 20 chr6 22867997 22868028 -159547214 + AT_rich Low_complexity Low_complexity 17 48 0 2125 130 3 0 chr6 22868610 22868911 -159546331 + AluSq SINE Alu 12 313 0 26 30 0 0 chr6 22869103 22869136 -159546106 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr6 22869235 22869262 -159545980 + AT_rich Low_complexity Low_complexity 1 27 0 1807 180 100 90 chr6 22869864 22870181 -159545061 - MLT2B1 LTR ERVL -3 517 192 2308 116 7 0 chr6 22870181 22870491 -159544751 - AluSx SINE Alu 0 312 1 1807 180 100 90 chr6 22870491 22870685 -159544557 - MLT2B1 LTR ERVL -328 192 1 2402 97 0 0 chr6 22870994 22871303 -159543939 + AluSc SINE Alu 1 309 0 328 316 6 63 chr6 22873512 22873560 -159541682 + L2 LINE L2 2909 2958 -314 3196 44 2 17 chr6 22873560 22873966 -159541276 - L1PA7 LINE L1 -1 6153 5754 328 316 6 63 chr6 22873966 22874075 -159541167 + L2 LINE L2 2958 3057 -215 1270 255 54 26 chr6 22874240 22874703 -159540539 - L1MC4a LINE L1 -1753 6055 5580 5417 130 169 27 chr6 22874709 22875812 -159539430 - MER52C LTR ERV1 -18 1260 2 599 264 146 15 chr6 22875836 22876181 -159539061 - L1M3 LINE L1 -609 5562 5173 2315 116 33 25 chr6 22876892 22877253 -159537989 - THE1B LTR MaLR 0 364 1 1506 252 27 56 chr6 22878180 22878629 -159536613 + MLT1J LTR MaLR 72 507 -4 321 299 15 58 chr6 22879171 22879308 -159535934 - MIR3 SINE MIR -65 143 13 2055 124 0 11 chr6 22879791 22880098 -159535144 - AluSx SINE Alu 0 309 6 2224 109 0 3 chr6 22880111 22880413 -159534829 - AluSg SINE Alu -9 301 1 313 212 24 24 chr6 22880675 22880760 -159534482 - MIR3 SINE MIR -51 157 73 202 0 0 83 chr6 22881502 22881538 -159533704 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 2425 90 0 3 chr6 22881540 22881852 -159533390 - AluY SINE Alu 0 311 1 2301 104 3 0 chr6 22881855 22882152 -159533090 - AluSp SINE Alu -15 298 1 290 116 23 0 chr6 22882978 22883021 -159532221 + MSTA LTR MaLR 1 44 -382 759 116 27 0 chr6 22883021 22883133 -159532109 + AluSq/x SINE Alu 24 138 -174 2018 143 62 0 chr6 22883142 22883464 -159531778 + MSTA LTR MaLR 87 428 0 476 309 88 78 chr6 22883514 22883704 -159531538 + HAL1 LINE L1 121 308 -2199 1706 148 46 11 chr6 22883704 22883988 -159531254 + AluSx SINE Alu 1 294 -18 476 309 88 78 chr6 22883988 22884377 -159530865 + HAL1 LINE L1 308 706 -1801 1475 201 31 109 chr6 22884384 22884542 -159530700 + MLT1D LTR MaLR 26 195 -310 2229 113 0 0 chr6 22884542 22884852 -159530390 - AluSq SINE Alu -3 310 1 1475 201 31 109 chr6 22884852 22884881 -159530361 + MLT1D LTR MaLR 195 225 -280 2169 95 0 3 chr6 22884881 22885176 -159530066 + AluSg SINE Alu 1 294 -16 1475 201 31 109 chr6 22885176 22885284 -159529958 + MLT1D LTR MaLR 225 340 -165 2289 99 0 0 chr6 22885284 22885587 -159529655 + AluSq SINE Alu 1 303 -10 1475 201 31 109 chr6 22885587 22885810 -159529432 + MLT1D LTR MaLR 340 505 0 384 302 126 9 chr6 22885810 22886032 -159529210 + HAL1 LINE L1 706 953 -1554 2143 99 7 0 chr6 22886079 22886381 -159528861 + AluSx SINE Alu 1 304 -8 423 242 57 50 chr6 22886413 22886517 -159528725 + HAL1 LINE L1 961 1063 -1444 1794 116 35 18 chr6 22886517 22886801 -159528441 + AluJo SINE Alu 1 289 -23 423 242 57 50 chr6 22886801 22886977 -159528265 + HAL1 LINE L1 1063 1243 -1264 388 113 0 0 chr6 22886978 22887031 -159528211 + AluSg/x SINE Alu 76 128 -172 2047 130 0 3 chr6 22887031 22887330 -159527912 + AluSx SINE Alu 1 298 -14 1587 52 0 5 chr6 22887428 22887639 -159527603 - AluY SINE Alu -5 306 97 1145 264 143 66 chr6 22887659 22888344 -159526898 + HAL1 LINE L1 1473 2210 -297 1728 229 122 12 chr6 22888376 22888870 -159526372 + MLT1H LTR MaLR 1 548 -1 180 111 0 0 chr6 22888870 22888897 -159526345 + (TG)n Simple_repeat Simple_repeat 2 28 0 1667 87 56 0 chr6 22888956 22889187 -159526055 - AluSx SINE Alu -10 302 59 240 289 142 71 chr6 22939714 22939791 -159475451 + MIR SINE MIR 18 88 -174 1883 122 0 76 chr6 22939791 22939983 -159475259 - AluSx SINE Alu -9 303 145 2350 50 0 31 chr6 22939983 22940304 -159474938 - AluY SINE Alu 0 311 1 1883 122 0 76 chr6 22940304 22940439 -159474803 - AluSx SINE Alu -167 145 1 240 289 142 71 chr6 22940439 22940558 -159474684 + MIR SINE MIR 88 228 -34 1773 160 23 7 chr6 22940808 22941115 -159474127 - AluJb SINE Alu 0 312 1 388 115 33 0 chr6 22942003 22942064 -159473178 + AluS SINE Alu 231 293 -7 230 239 80 45 chr6 22942185 22942273 -159472969 - MIR SINE MIR -62 200 110 189 178 0 0 chr6 22942380 22942425 -159472817 + (CTAG)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr6 22942817 22942850 -159472392 + AT_rich Low_complexity Low_complexity 1 33 0 494 285 39 43 chr6 22943432 22943639 -159471603 - MIR SINE MIR 0 262 57 257 299 0 31 chr6 22944290 22944416 -159470826 - AluSp/q SINE Alu 0 314 192 2059 117 0 10 chr6 22945057 22945356 -159469886 + AluSg SINE Alu 2 297 -13 1777 123 42 3 chr6 22945571 22945855 -159469387 + AluJb SINE Alu 1 295 -17 1948 118 13 13 chr6 22945859 22946165 -159469077 + AluSg SINE Alu 3 308 -2 543 101 0 0 chr6 22946165 22946244 -159468998 + (TA)n Simple_repeat Simple_repeat 1 79 0 28 0 0 0 chr6 22946248 22946276 -159468966 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 22946921 22946942 -159468300 + AT_rich Low_complexity Low_complexity 1 21 0 1998 125 0 6 chr6 22947208 22947519 -159467723 - AluY SINE Alu 0 311 3 1465 167 3 31 chr6 22947526 22947703 -159467539 - AluSx SINE Alu -2 310 144 1564 140 3 13 chr6 22947703 22948010 -159467232 - AluY SINE Alu -3 308 5 1465 167 3 31 chr6 22948010 22948149 -159467093 - AluSx SINE Alu -168 144 3 485 103 0 11 chr6 22949892 22949979 -159465263 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 213 213 0 0 chr6 22949969 22950016 -159465226 + A-rich Low_complexity Low_complexity 1 47 0 * 277 257 0 0 chr6 22950016 22950086 -159465156 + MLT1L LTR MaLR 546 615 0 1887 94 30 40 chr6 22950179 22950476 -159464766 + AluSx SINE Alu 1 294 -18 1126 153 0 48 chr6 22950590 22950799 -159464443 + AluSx SINE Alu 1 199 -113 1955 125 3 0 chr6 22950819 22951115 -159464127 + AluSc SINE Alu 1 297 -12 907 129 7 7 chr6 22951121 22951276 -159463966 + AluSg/x SINE Alu 138 292 -18 1174 217 36 4 chr6 22952504 22952780 -159462462 - AluJo SINE Alu -16 286 2 453 234 126 0 chr6 22952928 22953103 -159462139 + MER5C DNA MER1_type 113 309 -15 515 194 70 74 chr6 22953122 22953240 -159462002 + MER113 DNA MER1_type? 4 121 -400 2161 107 7 0 chr6 22953240 22953539 -159461703 - AluSp SINE Alu -12 301 1 296 48 24 0 chr6 22953546 22953588 -159461654 + (TA)n Simple_repeat Simple_repeat 2 44 0 2491 37 0 3 chr6 22953588 22953888 -159461354 - AluY SINE Alu -12 299 1 515 194 70 74 chr6 22953888 22954002 -159461240 + MER113 DNA MER1_type? 125 244 -277 24 0 0 0 chr6 22954002 22954026 -159461216 + AT_rich Low_complexity Low_complexity 1 24 0 2505 45 3 3 chr6 22954497 22954808 -159460434 - AluY SINE Alu 0 311 1 1944 119 0 0 chr6 22955794 22956072 -159459170 - AluSx SINE Alu 0 312 35 1685 157 54 7 chr6 22956164 22956458 -159458784 + AluJo SINE Alu 1 308 -4 1897 131 3 3 chr6 22956460 22956757 -159458485 + AluSx SINE Alu 1 297 -15 328 194 45 0 chr6 22957006 22957073 -159458169 + LTR16C LTR ERVL 214 283 -208 308 221 13 65 chr6 22957092 22957169 -159458073 - AluS SINE Alu -241 62 3 260 307 157 46 chr6 22957532 22957727 -159457515 + MIR SINE MIR 35 252 -10 1579 100 123 12 chr6 22958420 22958691 -159456551 - AluSg SINE Alu 0 299 1 1114 128 17 0 chr6 22958692 22958872 -159456370 + L1MB3 LINE L1 6000 6182 -1 189 0 0 0 chr6 22958993 22959014 -159456228 + (T)n Simple_repeat Simple_repeat 1 21 0 1966 118 3 47 chr6 22959340 22959526 -159455716 - AluSq SINE Alu -5 308 140 2393 51 0 13 chr6 22959526 22959840 -159455402 - AluY SINE Alu -1 310 1 1966 118 3 47 chr6 22959840 22959975 -159455267 - AluSq SINE Alu -173 140 1 2898 186 6 40 chr6 22960149 22960684 -159454558 - L1MCa LINE L1 -3259 3167 2616 2053 142 0 0 chr6 22960684 22960995 -159454247 + AluSq SINE Alu 1 311 -2 2898 186 6 40 chr6 22960995 22961031 -159454211 - L1MCa LINE L1 -3810 2616 2616 2305 93 0 3 chr6 22961031 22961341 -159453901 + AluSx SINE Alu 2 310 -2 2898 186 6 40 chr6 22961341 22961393 -159453849 - L1MCa LINE L1 -3810 2616 2564 557 212 159 59 chr6 22961560 22961795 -159453447 - MLT1H1 LTR MaLR -11 544 250 698 229 22 18 chr6 22962189 22962412 -159452830 + MER20B DNA MER1_type 544 767 -16 186 283 0 0 chr6 22962779 22962825 -159452417 + L2 LINE L2 3264 3309 -4 279 0 0 0 chr6 22964811 22964842 -159450400 + (T)n Simple_repeat Simple_repeat 1 31 0 530 208 77 24 chr6 22966727 22966895 -159448347 + MER104 DNA MER2_type 1 177 -3 1801 125 27 27 chr6 22967877 22968174 -159447068 - AluSx SINE Alu -15 297 1 410 228 118 24 chr6 22968276 22968403 -159446839 - MIR SINE MIR -7 255 117 239 170 0 19 chr6 22969293 22969346 -159445896 + (CA)n Simple_repeat Simple_repeat 1 52 0 198 71 0 0 chr6 22970111 22970139 -159445103 + (GA)n Simple_repeat Simple_repeat 1 28 0 213 250 0 0 chr6 22970854 22970946 -159444296 + (CGG)n Simple_repeat Simple_repeat 1 92 0 212 241 13 13 chr6 22971065 22971144 -159444098 + (CCG)n Simple_repeat Simple_repeat 1 79 0 209 123 0 53 chr6 22971515 22971572 -159443670 + (TCC)n Simple_repeat Simple_repeat 1 54 0 290 221 12 23 chr6 22971844 22971930 -159443312 + A-rich Low_complexity Low_complexity 5 89 0 297 75 0 0 chr6 22972808 22972848 -159442394 + (A)n Simple_repeat Simple_repeat 1 40 0 313 193 272 9 chr6 22973282 22973396 -159441846 - L1MCa LINE L1 -4065 2361 2218 22 0 0 0 chr6 22973448 22973470 -159441772 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 22976629 22976655 -159438587 + AT_rich Low_complexity Low_complexity 1 26 0 2171 110 0 0 chr6 22976671 22976970 -159438272 + AluSx SINE Alu 1 299 -13 268 429 30 5 chr6 22977602 22977805 -159437437 + MIR SINE MIR 47 254 -8 204 235 161 12 chr6 22977806 22977887 -159437355 + MIR SINE MIR 157 249 -13 365 288 159 18 chr6 22978303 22978466 -159436776 + MER5A DNA MER1_type 1 186 -3 246 311 95 34 chr6 22978489 22978637 -159436605 - MIR SINE MIR -78 184 28 1898 133 3 10 chr6 22978805 22979106 -159436136 + AluSq SINE Alu 1 299 -14 279 0 0 0 chr6 22979135 22979166 -159436076 + (TG)n Simple_repeat Simple_repeat 2 32 0 2030 103 3 27 chr6 22981495 22981631 -159433611 + AluSx SINE Alu 1 139 -173 2033 53 0 8 chr6 22981631 22981893 -159433349 + AluY SINE Alu 39 298 -13 2246 98 0 0 chr6 22981895 22982192 -159433050 + AluSc SINE Alu 1 297 -12 2030 103 3 27 chr6 22982192 22982353 -159432889 + AluSx SINE Alu 140 294 -18 1678 163 32 4 chr6 22983581 22983858 -159431384 - AluJb SINE Alu -26 286 2 2261 90 10 0 chr6 22983929 22984219 -159431023 + AluSp SINE Alu 1 293 -20 2280 75 7 0 chr6 22984230 22984534 -159430708 + AluSc SINE Alu 1 306 0 1333 186 80 22 chr6 22984658 22984969 -159430273 + MER61B LTR ERV1 1 421 -4 1501 116 0 18 chr6 22984969 22985194 -159430048 - pTR5 LTR ERV1 -2046 392 172 308 281 10 0 chr6 22985197 22985293 -159429949 - LTR30 LTR ERV1 -80 642 546 4077 128 196 24 chr6 22985299 22986287 -159428955 - pTR5 LTR ERV1 -417 2021 719 450 0 0 0 chr6 22986633 22986683 -159428559 + (CATAA)n Simple_repeat Simple_repeat 3 52 0 22 35 0 0 chr6 22986791 22986820 -159428422 + AT_rich Low_complexity Low_complexity 1 29 0 2331 88 3 3 chr6 22986893 22987189 -159428053 - AluSp SINE Alu -17 296 1 706 170 0 28 chr6 22988719 22988860 -159426382 - MER96B DNA MER1_type? -182 235 99 2175 93 25 0 chr6 22988860 22989140 -159426102 + AluSx SINE Alu 1 287 -25 239 73 59 29 chr6 22989147 22989215 -159426027 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 234 232 18 0 chr6 22989230 22989286 -159425956 - MER96B DNA MER1_type? -320 97 41 309 299 10 99 chr6 22989454 22989655 -159425587 - MER5A DNA MER1_type 0 189 7 333 0 0 0 chr6 22991341 22991378 -159423864 + (CA)n Simple_repeat Simple_repeat 2 38 0 2175 120 7 7 chr6 22992299 22992608 -159422634 - AluSx SINE Alu -3 309 1 414 208 201 19 chr6 22992757 22992793 -159422449 - MIR SINE MIR -9 253 225 204 40 0 0 chr6 22992793 22992818 -159422424 + (TA)n Simple_repeat Simple_repeat 1 25 0 414 208 201 19 chr6 22992818 22992940 -159422302 - MIR SINE MIR -37 225 66 1683 152 61 10 chr6 22992945 22993242 -159422000 + AluJb SINE Alu 1 312 0 1708 161 41 21 chr6 22993416 22993707 -159421535 - AluJb SINE Alu -15 297 1 2153 130 0 7 chr6 22994063 22994364 -159420878 + AluSx SINE Alu 1 299 -13 2325 96 3 3 chr6 22994968 22995269 -159419973 + AluSx SINE Alu 1 301 -11 4348 140 103 14 chr6 22995857 22996750 -159418492 - MER52C LTR ERV1 0 1278 1 1586 181 0 28 chr6 22996953 22997241 -159418001 + AluJo SINE Alu 2 281 -31 189 0 0 0 chr6 22997244 22997265 -159417977 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 519 240 96 7 chr6 22997386 22997532 -159417710 - MLT1L LTR MaLR -36 579 421 2170 132 0 7 chr6 22997717 22998020 -159417222 - AluSx SINE Alu -11 301 1 2282 114 3 0 chr6 22998021 22998320 -159416922 - AluSp SINE Alu -7 306 7 2429 80 0 3 chr6 22998451 22998752 -159416490 + AluY SINE Alu 3 302 -9 2251 123 0 3 chr6 22998977 22999285 -159415957 + AluSx SINE Alu 1 307 -5 673 309 79 70 chr6 22999720 22999814 -159415428 + L2 LINE L2 1841 1933 -1381 1853 176 0 13 chr6 22999814 23000121 -159415121 - AluJo SINE Alu -9 303 1 673 309 79 70 chr6 23000121 23000764 -159414478 + L2 LINE L2 1933 2588 -726 2495 60 0 7 chr6 23000764 23001066 -159414176 + AluY SINE Alu 1 300 -11 673 309 79 70 chr6 23001066 23001138 -159414104 + L2 LINE L2 2588 2658 -656 2253 104 3 3 chr6 23001185 23001482 -159413760 - AluSx SINE Alu -15 297 1 1795 157 54 7 chr6 23001484 23001778 -159413464 - AluJo SINE Alu -4 308 1 2054 116 0 0 chr6 23001870 23002146 -159413096 + AluSx SINE Alu 35 310 -2 2502 65 0 10 chr6 23003132 23003440 -159411802 + AluY SINE Alu 1 305 -6 1696 97 124 16 chr6 23003755 23004012 -159411230 + AluSg SINE Alu 1 285 -25 2202 66 30 20 chr6 23004920 23005222 -159410020 - AluY SINE Alu -5 306 2 614 318 138 17 chr6 23005279 23005429 -159409813 + L2 LINE L2 2434 2564 -749 2354 87 0 10 chr6 23005429 23005740 -159409502 - AluSc SINE Alu -1 308 1 614 318 138 17 chr6 23005740 23006086 -159409156 + L2 LINE L2 2564 3002 -311 253 297 0 69 chr6 23006205 23006306 -159408936 + L2 LINE L2 3218 3311 -2 214 229 0 29 chr6 23006363 23006433 -159408809 + (TA)n Simple_repeat Simple_repeat 2 69 0 2596 55 3 3 chr6 23006529 23006840 -159408402 + AluY SINE Alu 1 311 0 24 0 0 0 chr6 23007311 23007335 -159407907 + AT_rich Low_complexity Low_complexity 1 24 0 545 194 70 74 chr6 23007335 23007449 -159407793 - MER113 DNA MER1_type? -277 244 131 2701 36 0 3 chr6 23007449 23007757 -159407485 + AluY SINE Alu 1 307 -4 440 35 17 0 chr6 23007757 23007815 -159407427 + (TA)n Simple_repeat Simple_repeat 1 59 0 2273 110 7 0 chr6 23007822 23008121 -159407121 + AluSp SINE Alu 1 301 -12 545 194 70 74 chr6 23008121 23008239 -159407003 - MER113 DNA MER1_type? -395 126 4 714 234 122 11 chr6 23008258 23008536 -159406706 - MER5C DNA MER1_type -15 309 1 2128 131 0 3 chr6 23008695 23008993 -159406249 - AluSx SINE Alu -15 297 1 1702 109 4 0 chr6 23009065 23009329 -159405913 + AluSg/x SINE Alu 67 310 0 1237 117 0 0 chr6 23009505 23009676 -159405566 + AluSg/x SINE Alu 134 304 -8 2104 125 3 0 chr6 23009966 23010263 -159404979 - AluSq SINE Alu -15 298 1 2169 126 13 0 chr6 23010924 23011233 -159404009 - AluSq SINE Alu 0 313 1 1585 176 11 21 chr6 23011507 23011791 -159403451 + AluJb SINE Alu 1 281 -31 229 0 26 53 chr6 23011794 23011832 -159403410 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2553 68 0 0 chr6 23011981 23012288 -159402954 + AluSc SINE Alu 1 307 -2 2302 108 0 3 chr6 23012293 23012599 -159402643 + AluSg SINE Alu 1 305 -5 21 0 0 0 chr6 23012872 23012893 -159402349 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 23013538 23013566 -159401676 + AT_rich Low_complexity Low_complexity 1 28 0 450 53 0 0 chr6 23013570 23013627 -159401615 + (TA)n Simple_repeat Simple_repeat 2 58 0 2085 117 13 13 chr6 23013629 23013937 -159401305 - AluSg SINE Alu 0 310 3 1835 134 42 3 chr6 23013941 23014225 -159401017 - AluJb SINE Alu -17 295 1 2204 114 0 10 chr6 23014440 23014739 -159400503 - AluSg SINE Alu -13 297 2 551 274 71 63 chr6 23015380 23015609 -159399633 - L1M4 LINE L1 -1983 4163 3937 1883 86 4 0 chr6 23015609 23015874 -159399368 - AluSc SINE Alu 0 312 47 551 274 71 63 chr6 23015874 23016150 -159399092 - L1M4 LINE L1 -2209 3937 3653 2505 67 0 16 chr6 23016172 23016486 -159398756 - AluY SINE Alu -2 309 1 2433 100 0 0 chr6 23016496 23016806 -159398436 - AluSg SINE Alu 0 310 1 871 191 22 16 chr6 23016806 23016981 -159398261 - AluJo SINE Alu -14 298 120 734 170 7 0 chr6 23017057 23017204 -159398038 + CT-rich Low_complexity Low_complexity 1 148 0 1483 131 0 0 chr6 23017204 23017410 -159397832 - AluSg/x SINE Alu -10 302 97 10286 113 26 20 chr6 23017410 23018361 -159396881 + Tigger1 DNA MER2_type 465 1408 -1010 2315 90 0 0 chr6 23018361 23018660 -159396582 - AluY SINE Alu -12 299 1 10286 113 26 20 chr6 23018660 23018924 -159396318 + Tigger1 DNA MER2_type 1408 1669 -749 2141 110 28 0 chr6 23018924 23019214 -159396028 + AluSg SINE Alu 1 298 -12 10286 113 26 20 chr6 23019214 23019580 -159395662 + Tigger1 DNA MER2_type 1669 2058 -360 837 125 16 0 chr6 23019580 23019708 -159395534 - AluSg SINE Alu -7 302 173 952 85 0 0 chr6 23019708 23019826 -159395416 - AluSg SINE Alu -192 118 1 2354 114 29 0 chr6 23019826 23020168 -159395074 + Tigger1 DNA MER2_type 2064 2415 -3 1007 233 8 16 chr6 23020303 23020548 -159394694 - L1M4 LINE L1 -1191 4955 4713 2224 97 30 0 chr6 23020841 23021139 -159394103 + AluSq SINE Alu 1 307 -6 366 302 181 25 chr6 23021161 23021482 -159393760 - L1MDa LINE L1 -4588 1541 1171 36 17 0 35 chr6 23021528 23021568 -159393674 + AT_rich Low_complexity Low_complexity 1 40 -16 2165 116 7 0 chr6 23021568 23021860 -159393382 + AluSg1 SINE Alu 1 294 -15 36 17 0 35 chr6 23021860 23021877 -159393365 + AT_rich Low_complexity Low_complexity 40 56 0 332 281 82 41 chr6 23021896 23021981 -159393261 - L1MDa LINE L1 -4952 1167 1087 2038 141 0 0 chr6 23021981 23022287 -159392955 - AluSg SINE Alu -4 306 1 332 281 82 41 chr6 23022287 23022397 -159392845 - L1MDa LINE L1 -5032 1087 964 484 264 39 8 chr6 23022499 23022628 -159392614 + LTR16C LTR ERVL 151 283 -208 403 194 28 0 chr6 23022651 23022723 -159392519 - AluS SINE Alu -235 76 3 274 305 146 37 chr6 23023085 23023278 -159391964 + MIR SINE MIR 38 249 -13 1786 96 115 11 chr6 23023971 23024241 -159391001 - AluSg SINE Alu -12 298 1 1127 127 16 16 chr6 23024241 23024422 -159390820 + L1MB3 LINE L1 5999 6182 -1 189 0 0 0 chr6 23024542 23024563 -159390679 + (T)n Simple_repeat Simple_repeat 1 21 0 2115 120 3 31 chr6 23024889 23025070 -159390172 - AluSq SINE Alu -5 308 138 2468 49 0 13 chr6 23025070 23025375 -159389867 - AluY SINE Alu -10 301 1 2115 120 3 31 chr6 23025375 23025510 -159389732 - AluSq SINE Alu -175 138 1 292 335 135 16 chr6 23026665 23026969 -159388273 + L3 LINE CR1 496 835 -742 372 259 0 12 chr6 23027035 23027120 -159388122 - L2 LINE L2 -8 3264 3181 2506 114 7 88 chr6 23027159 23027417 -159387825 - MSTA LTR MaLR 0 428 223 2212 86 7 0 chr6 23027417 23027695 -159387547 - AluSp SINE Alu -13 300 21 2506 114 7 88 chr6 23027695 23027901 -159387341 - MSTA LTR MaLR -205 223 2 1241 194 28 127 chr6 23028373 23028635 -159386607 - MLT1B LTR MaLR 0 390 177 2535 59 0 3 chr6 23028635 23028938 -159386304 - AluY SINE Alu -9 302 1 1241 194 28 127 chr6 23028938 23029062 -159386180 - MLT1B LTR MaLR -213 177 42 1839 207 65 59 chr6 23029065 23029558 -159385684 + MLT2B3 LTR ERVL 5 500 -54 4414 105 25 6 chr6 23029568 23030197 -159385045 - LTR9B LTR ERV1 -2 642 2 462 73 12 85 chr6 23030197 23030257 -159384985 + MLT2A2 LTR ERVL 400 453 0 317 128 0 0 chr6 23030257 23030304 -159384938 - MLT1B LTR MaLR -325 49 3 259 274 77 95 chr6 23030305 23030580 -159384662 - L2 LINE L2 -691 2623 2359 2287 84 0 26 chr6 23030580 23030889 -159384353 + AluSx SINE Alu 12 312 0 259 274 77 95 chr6 23030889 23031109 -159384133 - L2 LINE L2 -955 2359 2137 2166 134 0 0 chr6 23031187 23031493 -159383749 + AluSx SINE Alu 1 306 -6 1948 143 26 10 chr6 23033033 23033340 -159381902 + AluJb SINE Alu 1 312 0 181 261 102 83 chr6 23033594 23033718 -159381524 - MIR SINE MIR -26 236 116 2005 118 0 85 chr6 23033718 23033853 -159381389 + AluSx SINE Alu 1 146 -166 2511 47 0 31 chr6 23033853 23034174 -159381068 + AluY SINE Alu 1 311 0 2005 118 0 85 chr6 23034174 23034313 -159380929 + AluSx SINE Alu 145 302 -9 394 91 0 0 chr6 23034313 23034368 -159380874 + Alu SINE Alu 248 302 0 181 261 102 83 chr6 23034369 23034401 -159380841 - MIR SINE MIR -146 116 77 228 320 70 51 chr6 23034494 23034650 -159380592 - L2 LINE L2 -190 3082 2924 2602 42 0 10 chr6 23034941 23035248 -159379994 - AluY SINE Alu -7 304 1 263 248 64 28 chr6 23035407 23035516 -159379726 - MIR SINE MIR -26 236 124 2361 93 0 13 chr6 23035701 23036013 -159379229 - AluSg SINE Alu -2 308 1 1282 170 15 104 chr6 23036037 23036216 -159379026 - AluJo SINE Alu -6 306 169 192 77 0 0 chr6 23036216 23036242 -159379000 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1282 170 15 104 chr6 23036242 23036398 -159378844 - AluJo SINE Alu -143 169 1 222 37 0 0 chr6 23036400 23036427 -159378815 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2355 60 7 0 chr6 23036429 23036712 -159378530 - AluY SINE Alu -26 285 1 507 50 0 0 chr6 23036713 23036773 -159378469 - AluSq/x SINE Alu -168 145 86 1103 178 35 0 chr6 23036775 23036972 -159378270 - AluSx SINE Alu -108 204 1 335 296 56 0 chr6 23037197 23037305 -159377937 - MLT1I LTR MaLR -6 403 290 822 238 48 19 chr6 23037351 23037561 -159377681 - MLT1I LTR MaLR -192 217 2 2486 87 0 0 chr6 23037727 23038037 -159377205 + AluSx SINE Alu 1 310 -2 897 211 43 142 chr6 23038514 23038817 -159376425 - LTR16C LTR ERVL -2 489 240 2185 123 0 3 chr6 23038817 23039117 -159376125 - AluSx SINE Alu -13 299 1 897 211 43 142 chr6 23039117 23039250 -159375992 - LTR16C LTR ERVL -251 240 96 196 183 17 17 chr6 23042203 23042263 -159372979 + GA-rich Low_complexity Low_complexity 2 61 0 2359 95 10 0 chr6 23043655 23043959 -159371283 + AluSx SINE Alu 1 307 -5 262 311 20 22 chr6 23045570 23045710 -159369532 + MIR SINE MIR 63 199 -9 2349 94 3 0 chr6 23045798 23046106 -159369136 - AluSq SINE Alu -4 309 1 342 274 62 20 chr6 23046413 23046559 -159368683 + MIR SINE MIR 29 180 -82 2467 72 3 0 chr6 23047824 23048130 -159367112 - AluSp SINE Alu -6 307 1 2282 89 3 32 chr6 23048291 23048606 -159366636 - AluSg SINE Alu -4 306 1 2027 265 150 26 chr6 23048740 23049638 -159365604 - L2 LINE L2 0 3313 2216 2103 104 3 7 chr6 23049638 23049936 -159365306 - AluSx SINE Alu -15 297 1 2027 265 150 26 chr6 23049936 23050343 -159364899 - L2 LINE L2 -1097 2216 1861 2453 62 0 23 chr6 23050404 23050708 -159364534 + AluY SINE Alu 1 297 -14 230 344 15 15 chr6 23050753 23050884 -159364358 - MIR SINE MIR -50 212 82 2449 101 0 0 chr6 23051285 23051593 -159363649 - AluSg SINE Alu -2 308 1 2415 76 9 22 chr6 23051598 23051913 -159363329 - AluY SINE Alu 0 311 1 1192 139 10 57 chr6 23051933 23052142 -159363100 - AluSx SINE Alu -113 199 1 2039 97 27 40 chr6 23052256 23052554 -159362688 - AluSx SINE Alu -18 294 1 264 271 0 0 chr6 23052647 23052717 -159362525 - MLT1L LTR MaLR 0 615 546 221 189 0 0 chr6 23052717 23052754 -159362488 + T-rich Low_complexity Low_complexity 1 37 0 891 61 0 55 chr6 23052754 23052917 -159362325 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 255 271 17 0 chr6 23052937 23052996 -159362246 - MLT1L LTR MaLR -91 524 465 2223 104 0 13 chr6 23053044 23053342 -159361900 - AluSg1 SINE Alu -15 294 1 2005 222 22 89 chr6 23053376 23053463 -159361779 - L1MB7 LINE L1 -46 6138 6047 2551 74 0 0 chr6 23053463 23053772 -159361470 - AluY SINE Alu -2 309 1 2005 222 22 89 chr6 23053772 23054159 -159361083 - L1MB7 LINE L1 -137 6047 5636 2004 149 0 3 chr6 23054159 23054455 -159360787 + AluJb SINE Alu 1 295 -17 2005 222 22 89 chr6 23054455 23054547 -159360695 - L1MB7 LINE L1 -548 5636 5622 2351 105 0 6 chr6 23054547 23054862 -159360380 - AluSq SINE Alu 0 313 1 2005 222 22 89 chr6 23054862 23054977 -159360265 - L1MB7 LINE L1 -562 5622 5501 180 0 0 0 chr6 23055301 23055321 -159359921 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2261 89 0 0 chr6 23055321 23055601 -159359641 - AluSx SINE Alu -32 280 1 869 136 0 29 chr6 23055704 23055844 -159359398 + AluJb SINE Alu 1 136 -176 1668 171 19 23 chr6 23056574 23056884 -159358358 - AluJb SINE Alu -3 309 1 2277 113 3 0 chr6 23056979 23057280 -159357962 - AluSq SINE Alu -11 302 1 278 359 47 0 chr6 23057405 23057533 -159357709 - MIR SINE MIR -61 201 68 2591 71 0 0 chr6 23057745 23058056 -159357186 - AluY SINE Alu 0 311 1 1870 162 0 40 chr6 23058539 23058860 -159356382 - AluJo SINE Alu -4 308 1 2338 76 0 3 chr6 23058880 23059168 -159356074 - AluY SINE Alu -23 288 2 2171 117 0 0 chr6 23059327 23059610 -159355632 + AluSq SINE Alu 1 283 -30 37 39 0 0 chr6 23059614 23059665 -159355577 + AT_rich Low_complexity Low_complexity 1 51 0 2481 78 0 3 chr6 23059962 23060271 -159354971 + AluSg SINE Alu 1 308 -2 3362 113 14 67 chr6 23061593 23062149 -159353093 + MER1A DNA MER1_type 1 527 0 353 74 0 0 chr6 23062226 23062280 -159352962 - Alu SINE Alu 0 301 248 261 83 0 0 chr6 23062282 23062318 -159352924 + (A)n Simple_repeat Simple_repeat 1 36 0 1252 132 0 0 chr6 23062318 23062500 -159352742 + AluSg/x SINE Alu 129 310 -2 241 216 128 49 chr6 23062522 23062624 -159352618 - MER103 DNA DNA -14 152 43 2255 101 0 7 chr6 23063008 23063305 -159351937 + AluSc SINE Alu 1 295 -14 1089 203 198 44 chr6 23063652 23064086 -159351156 + MLT1D LTR MaLR 5 505 0 2751 36 0 0 chr6 23064440 23064747 -159350495 + AluY SINE Alu 1 307 -4 778 88 18 0 chr6 23065425 23065539 -159349703 - LTR9B LTR ERV1 -87 557 442 250 113 0 75 chr6 23066051 23066104 -159349138 + L2 LINE L2 3265 3313 0 996 151 158 58 chr6 23066240 23066531 -159348711 - MER33 DNA MER1_type 0 324 5 296 159 0 29 chr6 23066769 23066838 -159348404 + MIR SINE MIR 82 148 -114 2384 104 0 0 chr6 23066876 23067184 -159348058 - AluSx SINE Alu -4 308 1 2330 97 0 0 chr6 23069313 23069602 -159345640 - AluSc SINE Alu -20 289 1 835 123 0 0 chr6 23070616 23070738 -159344504 - MER41A LTR ERV1 0 554 433 1092 62 8 0 chr6 23070738 23070867 -159344375 + AluSq/x SINE Alu 3 132 -180 2386 95 0 3 chr6 23070869 23071175 -159344067 + AluSq SINE Alu 1 305 -8 2258 117 3 0 chr6 23071188 23071487 -159343755 + AluSx SINE Alu 1 300 -12 1181 106 6 0 chr6 23071489 23071650 -159343592 - MER41B LTR ERV1 -111 524 363 1621 125 20 128 chr6 23071650 23071995 -159343247 - AluYb8 SINE Alu 0 308 1 2141 131 0 10 chr6 23071995 23072300 -159342942 - AluSq SINE Alu -11 302 1 1978 128 82 33 chr6 23073395 23073469 -159341773 - MLT1B LTR MaLR -2 388 319 2196 94 3 7 chr6 23073469 23073757 -159341485 + AluSq SINE Alu 1 287 -26 1978 128 82 33 chr6 23073757 23074050 -159341192 - MLT1B LTR MaLR -71 319 3 2152 124 0 0 chr6 23074464 23074755 -159340487 - AluSx SINE Alu -21 291 1 1148 240 146 28 chr6 23074761 23075186 -159340056 - L1ME3A LINE L1 -5 6165 5691 1028 228 64 38 chr6 23075201 23075422 -159339820 - L1MA7 LINE L1 -4 6287 6073 2394 69 0 20 chr6 23075422 23075728 -159339514 - AluY SINE Alu -11 300 1 1028 228 64 38 chr6 23075728 23075932 -159339310 - L1MA7 LINE L1 -218 6073 5346 860 171 13 7 chr6 23075956 23076108 -159339134 + AluJb SINE Alu 140 292 -20 749 62 31 0 chr6 23076108 23076237 -159339005 + (TA)n Simple_repeat Simple_repeat 1 133 0 325 172 78 0 chr6 23076391 23076455 -159338787 - MER94 DNA DNA -65 69 1 267 347 97 0 chr6 23076510 23076634 -159338608 - L2 LINE L2 0 3272 3137 2305 101 3 0 chr6 23076645 23076941 -159338301 - AluSp SINE Alu -16 297 1 2336 56 62 0 chr6 23076941 23077229 -159338013 - AluY SINE Alu -5 306 1 213 250 14 83 chr6 23077788 23077860 -159337382 + L2 LINE L2 3204 3270 -2 2235 87 0 45 chr6 23077878 23078022 -159337220 + AluSx SINE Alu 3 127 -185 2382 59 31 0 chr6 23078022 23078309 -159336933 + AluY SINE Alu 2 297 -14 2235 87 0 45 chr6 23078309 23078474 -159336768 + AluSx SINE Alu 127 298 -14 365 291 12 42 chr6 23078720 23078885 -159336357 - L2 LINE L2 -205 3067 2908 2623 193 54 51 chr6 23079068 23079933 -159335309 + L1MC5 LINE L1 6990 7913 -48 26 50 0 0 chr6 23080068 23080108 -159335134 + AT_rich Low_complexity Low_complexity 1 40 0 322 224 43 26 chr6 23080151 23080267 -159334975 - L1ME4a LINE L1 -21 6100 5983 22 56 0 0 chr6 23080280 23080316 -159334926 + AT_rich Low_complexity Low_complexity 1 36 0 563 295 91 42 chr6 23080328 23080615 -159334627 - L1ME4a LINE L1 -233 5888 5616 2586 46 0 13 chr6 23080615 23080922 -159334320 - AluY SINE Alu -8 303 1 563 295 91 42 chr6 23080922 23081227 -159334015 - L1ME4a LINE L1 -505 5616 5267 2171 112 0 0 chr6 23081320 23081598 -159333644 + AluSx SINE Alu 2 279 -33 207 0 0 0 chr6 23081598 23081621 -159333621 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chr6 23081622 23081657 -159333585 + AT_rich Low_complexity Low_complexity 1 35 0 298 210 25 62 chr6 23082591 23082672 -159332570 + MIR SINE MIR 44 121 -87 2150 118 10 0 chr6 23082712 23083017 -159332225 - AluSq SINE Alu -5 308 1 1773 175 45 0 chr6 23083114 23083400 -159331842 + AluJo SINE Alu 1 299 -13 2470 77 0 13 chr6 23084708 23085021 -159330221 + AluY SINE Alu 1 309 -2 1955 128 48 0 chr6 23085174 23085463 -159329779 - AluSx SINE Alu -9 303 1 2465 77 0 3 chr6 23085598 23085898 -159329344 + AluSg SINE Alu 1 299 -11 365 233 23 0 chr6 23087324 23087410 -159327832 + L2 LINE L2 3223 3310 -3 21 0 0 0 chr6 23087614 23087635 -159327607 + AT_rich Low_complexity Low_complexity 1 21 0 2067 111 4 4 chr6 23087702 23088015 -159327227 - AluSg SINE Alu 0 313 1 232 135 0 0 chr6 23088015 23088052 -159327190 + Alu SINE Alu 201 237 -65 213 339 34 34 chr6 23088302 23088420 -159326822 - L2 LINE L2 0 3272 3155 371 280 103 40 chr6 23088463 23088638 -159326604 - MIR SINE MIR -6 256 71 3915 159 66 22 chr6 23089265 23089767 -159325475 - L1MB1 LINE L1 -1 6167 5620 1258 224 53 30 chr6 23089767 23090071 -159325171 + AluJo SINE Alu 1 311 -1 3915 159 66 22 chr6 23090071 23090310 -159324932 - L1MB1 LINE L1 -548 5620 5393 1053 202 0 5 chr6 23090304 23090522 -159324720 + L1MB1 LINE L1 5150 5366 -780 * 2286 95 3 7 chr6 23090522 23090826 -159324416 + AluSg SINE Alu 1 303 -7 202 273 106 0 chr6 23091566 23091632 -159323610 - MIR3 SINE MIR -43 165 93 2307 109 3 0 chr6 23091791 23092102 -159323140 - AluSp SINE Alu -1 312 1 2272 99 3 0 chr6 23092787 23093080 -159322162 + AluSp SINE Alu 1 294 -19 1966 105 30 20 chr6 23093092 23093220 -159322022 + AluSq SINE Alu 1 126 -187 2414 78 0 7 chr6 23093220 23093527 -159321715 + AluSg1 SINE Alu 1 305 -4 1966 105 30 20 chr6 23093527 23093693 -159321549 + AluSq SINE Alu 126 298 -15 3941 159 56 27 chr6 23093759 23094270 -159320972 - MER4E LTR ERV1 -4 775 280 180 0 0 0 chr6 23094270 23094290 -159320952 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 567 53 0 0 chr6 23094289 23094364 -159320878 + (CA)n Simple_repeat Simple_repeat 1 75 0 3941 159 56 27 chr6 23094290 23094600 -159320642 - MER4E LTR ERV1 -499 280 6 846 239 0 0 chr6 23094740 23094899 -159320343 - FRAM SINE Alu -18 158 1 1741 218 44 36 chr6 23095005 23095500 -159319742 - MLT1D LTR MaLR 0 505 7 2418 79 10 0 chr6 23095802 23096107 -159319135 + AluSx SINE Alu 1 308 -4 551 253 41 57 chr6 23096205 23096399 -159318843 + MIR SINE MIR 72 262 0 1917 91 0 0 chr6 23096702 23096945 -159318297 - AluSx SINE Alu -69 243 1 2253 84 0 11 chr6 23097457 23097774 -159317468 - AluSq SINE Alu 0 314 1 1483 116 116 4 chr6 23097779 23098012 -159317230 - AluSx SINE Alu -18 294 36 1364 176 11 22 chr6 23098319 23098586 -159316656 - MER61B LTR ERV1 -29 396 133 2358 85 0 13 chr6 23098861 23099168 -159316074 - AluSq SINE Alu -9 304 2 246 240 160 0 chr6 23099752 23099827 -159315415 + MIR3 SINE MIR 115 201 -7 204 40 0 0 chr6 23100467 23100492 -159314750 + (T)n Simple_repeat Simple_repeat 1 25 0 2405 92 0 0 chr6 23100661 23100964 -159314278 - AluSq SINE Alu -10 303 1 2371 92 0 7 chr6 23101672 23101977 -159313265 + AluSc SINE Alu 1 303 -6 300 137 0 0 chr6 23101978 23102029 -159313213 + (CA)n Simple_repeat Simple_repeat 2 52 0 1112 155 0 34 chr6 23102128 23102335 -159312907 - AluJo SINE Alu -24 288 89 1884 92 99 34 chr6 23103460 23103753 -159311489 - AluSx SINE Alu 0 312 1 2191 84 0 11 chr6 23104236 23104521 -159310721 + AluSx SINE Alu 1 282 -30 554 118 13 0 chr6 23104521 23104597 -159310645 - AluS SINE Alu -231 78 2 258 120 0 0 chr6 23104610 23104653 -159310589 + (A)n Simple_repeat Simple_repeat 1 46 -4 2472 60 0 16 chr6 23104653 23104969 -159310273 + AluY SINE Alu 1 311 0 258 120 0 0 chr6 23104969 23104975 -159310267 + (A)n Simple_repeat Simple_repeat 45 50 0 847 180 20 20 chr6 23105034 23105184 -159310058 + FRAM SINE Alu 6 155 -21 2362 88 0 7 chr6 23106109 23106414 -159308828 - AluSp SINE Alu -10 303 1 2065 135 27 0 chr6 23106809 23107106 -159308136 - AluSx SINE Alu -3 309 5 258 259 0 37 chr6 23107238 23107319 -159307923 - MIR SINE MIR -73 135 58 1029 115 0 19 chr6 23107933 23108089 -159307153 - L1MB3 LINE L1 -1 6182 6030 2275 89 7 0 chr6 23108140 23108431 -159306811 + AluSg SINE Alu 1 293 -17 250 261 91 0 chr6 23108542 23108630 -159306612 - MIR SINE MIR -51 211 116 189 178 0 0 chr6 23108747 23108792 -159306450 + (CTAG)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr6 23109184 23109217 -159306025 + AT_rich Low_complexity Low_complexity 1 33 0 626 222 43 48 chr6 23109799 23110006 -159305236 - MIR SINE MIR 0 262 57 2357 67 3 0 chr6 23110657 23110970 -159304272 - AluSp SINE Alu 0 314 1 2284 93 10 0 chr6 23111147 23111437 -159303805 + AluSx SINE Alu 1 293 -19 2285 80 10 0 chr6 23112561 23112850 -159302392 - AluSg1 SINE Alu -17 292 1 185 319 57 71 chr6 23113183 23113324 -159301918 + L2 LINE L2 3172 3310 -3 1225 143 46 97 chr6 23113874 23114133 -159301109 + AluJb SINE Alu 67 312 0 24 53 0 0 chr6 23114937 23114975 -159300267 + AT_rich Low_complexity Low_complexity 1 38 0 200 200 0 0 chr6 23115031 23115066 -159300176 - L2 LINE L2 -12 3301 3267 548 277 55 118 chr6 23115190 23115519 -159299723 - L2 LINE L2 -1 3271 2964 550 305 26 13 chr6 23115757 23115983 -159299259 - L2 LINE L2 -599 2715 2487 21 0 0 0 chr6 23116066 23116087 -159299155 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 23116664 23116692 -159298550 + AT_rich Low_complexity Low_complexity 1 28 0 192 273 0 0 chr6 23118826 23118881 -159296361 + L3b LINE CR1 1383 1437 -146 2190 94 0 52 chr6 23119066 23119394 -159295848 - AluSq SINE Alu -2 311 1 2147 117 0 0 chr6 23119405 23119705 -159295537 - AluY SINE Alu -11 300 1 2051 89 32 3 chr6 23119841 23120123 -159295119 - AluSg SINE Alu -19 291 2 198 328 0 33 chr6 23120225 23120286 -159294956 - L2 LINE L2 -30 3242 3184 1882 142 3 32 chr6 23120480 23120791 -159294451 - AluJo SINE Alu -8 304 3 1186 145 0 0 chr6 23121128 23121300 -159293942 + AluJb SINE Alu 130 301 -11 255 263 13 125 chr6 23121596 23121748 -159293494 + L2 LINE L2 2916 3050 -222 907 240 59 125 chr6 23121783 23122019 -159293223 - LTR67 LTR ERVL 0 557 307 2211 121 0 13 chr6 23122019 23122196 -159293046 - AluSx SINE Alu -2 310 137 2626 45 3 3 chr6 23122196 23122506 -159292736 - AluY SINE Alu -1 310 1 2211 121 0 13 chr6 23122506 23122642 -159292600 - AluSx SINE Alu -175 137 1 907 240 59 125 chr6 23122642 23122997 -159292245 - LTR67 LTR ERVL -250 307 5 261 182 55 0 chr6 23123042 23123097 -159292145 + MIR SINE MIR 156 213 -49 27 0 0 0 chr6 23125006 23125033 -159290209 + AT_rich Low_complexity Low_complexity 1 27 0 306 237 148 15 chr6 23126814 23126949 -159288293 - L1ME4a LINE L1 -1 6189 6037 711 258 140 56 chr6 23127284 23127476 -159287766 - L1ME4a LINE L1 -223 6016 5842 930 265 185 35 chr6 23127476 23127903 -159287339 + LTR16C LTR ERVL 1 491 0 711 258 140 56 chr6 23127903 23128282 -159286960 - L1ME4a LINE L1 -397 5842 5352 804 177 23 0 chr6 23128282 23128412 -159286830 - FLAM_A SINE Alu 0 133 1 711 258 140 56 chr6 23128412 23128542 -159286700 - L1ME4a LINE L1 -887 5352 5234 2393 85 0 0 chr6 23128562 23128856 -159286386 - AluSx SINE Alu -17 295 2 405 202 0 11 chr6 23128913 23129007 -159286235 - L1ME4a LINE L1 -4107 2289 2197 282 178 0 0 chr6 23129009 23129063 -159286179 - Alu SINE Alu -263 39 1 302 45 0 136 chr6 23130323 23130340 -159284902 + L1MB3 LINE L1 6127 6145 -38 1972 123 16 52 chr6 23130340 23130650 -159284592 - AluSg SINE Alu -11 299 1 302 45 0 136 chr6 23130650 23130698 -159284544 + L1MB3 LINE L1 6145 6183 0 363 366 65 5 chr6 23130982 23131198 -159284044 - MIR SINE MIR -14 248 20 287 321 0 27 chr6 23131335 23131447 -159283795 - L2 LINE L2 -1 3312 3204 2423 87 0 0 chr6 23131651 23131961 -159283281 + AluSg SINE Alu 1 310 0 876 202 40 15 chr6 23131966 23132164 -159283078 + MER82 DNA MER2_type 5 207 -446 21 82 0 0 chr6 23132166 23132215 -159283027 + AT_rich Low_complexity Low_complexity 1 49 0 2209 215 35 20 chr6 23132220 23132675 -159282567 + MER82 DNA MER2_type 191 652 -1 544 302 26 16 chr6 23132775 23132964 -159282278 - L2 LINE L2 -248 3065 2875 1999 81 23 8 chr6 23133442 23133702 -159281540 - AluSx SINE Alu -48 264 1 2380 63 0 47 chr6 23133715 23134033 -159281209 - AluY SINE Alu -7 304 2 2420 62 10 19 chr6 23134040 23134348 -159280894 - AluY SINE Alu -6 305 1 2174 85 61 0 chr6 23135006 23135299 -159279943 - AluSp SINE Alu -2 311 1 1817 157 3 14 chr6 23135493 23135787 -159279455 - AluJo SINE Alu -19 293 3 37 23 0 0 chr6 23136723 23136767 -159278475 + AT_rich Low_complexity Low_complexity 1 44 0 4583 137 50 61 chr6 23136815 23138285 -159276957 + pTR5 LTR ERV1 741 2438 0 2061 77 0 0 chr6 23138342 23138602 -159276640 + AluY SINE Alu 1 260 -51 333 0 0 0 chr6 23138647 23138684 -159276558 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1929 146 17 3 chr6 23139083 23139247 -159275995 - AluSx SINE Alu -7 305 134 2024 124 10 13 chr6 23139247 23139545 -159275697 - AluSx SINE Alu -15 297 1 1929 146 17 3 chr6 23139545 23139681 -159275561 - AluSx SINE Alu -178 134 1 23 54 0 0 chr6 23139686 23139723 -159275519 + AT_rich Low_complexity Low_complexity 1 37 0 2142 116 3 0 chr6 23139935 23140229 -159275013 - AluSx SINE Alu -11 301 7 1066 177 0 58 chr6 23140493 23140719 -159274523 + AluJb SINE Alu 85 297 -15 25 0 0 0 chr6 23141715 23141740 -159273502 + AT_rich Low_complexity Low_complexity 1 25 0 1106 196 0 24 chr6 23141741 23141950 -159273292 - AluJo SINE Alu -23 289 86 2281 107 0 3 chr6 23142114 23142424 -159272818 - AluSc SINE Alu 0 309 1 2263 109 0 3 chr6 23142918 23143220 -159272022 + AluSx SINE Alu 1 301 -11 193 222 0 0 chr6 23144421 23144466 -159270776 - L2 LINE L2 -5 3308 3264 2502 57 0 10 chr6 23146345 23146644 -159268598 + AluY SINE Alu 1 296 -15 306 0 0 0 chr6 23146645 23146679 -159268563 + (TA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr6 23146678 23146707 -159268535 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 476 356 50 19 chr6 23147084 23147404 -159267838 + L3 LINE CR1 1147 1476 -101 23 33 0 0 chr6 23148115 23148145 -159267097 + AT_rich Low_complexity Low_complexity 1 30 0 215 225 81 72 chr6 23149260 23149371 -159265871 + L2 LINE L2 3160 3271 -1 1896 127 11 14 chr6 23149689 23149873 -159265369 - AluSc SINE Alu 0 318 134 2452 58 0 26 chr6 23149873 23150181 -159265061 - AluY SINE Alu -11 300 1 1896 127 11 14 chr6 23150181 23150315 -159264927 - AluSc SINE Alu -184 134 1 285 275 14 0 chr6 23150340 23150409 -159264833 + CT-rich Low_complexity Low_complexity 3 72 0 602 244 0 0 chr6 23150490 23150609 -159264633 + FLAM_A SINE Alu 8 126 -16 777 132 0 90 chr6 23151121 23151151 -159264091 - FLAM_C SINE Alu -169 133 102 1599 133 182 0 chr6 23151151 23151415 -159263827 + AluSx SINE Alu 1 312 0 777 132 0 90 chr6 23151415 23151528 -159263714 - FLAM_C SINE Alu -200 102 3 35 0 0 0 chr6 23152098 23152133 -159263109 + AT_rich Low_complexity Low_complexity 1 35 0 2110 84 40 0 chr6 23152138 23152412 -159262830 - AluSg SINE Alu -25 285 1 1184 68 0 20 chr6 23152412 23152558 -159262684 - AluSq/x SINE Alu -170 143 1 524 315 72 21 chr6 23152681 23152960 -159262282 - L2 LINE L2 -2 3311 3019 2228 128 0 0 chr6 23153249 23153562 -159261680 - AluSq SINE Alu 0 313 1 1041 131 0 0 chr6 23154396 23154572 -159260670 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 245 336 60 8 chr6 23154578 23154712 -159260530 + MIR3 SINE MIR 61 201 -7 505 203 38 23 chr6 23155016 23155149 -159260093 - MIR SINE MIR -71 191 57 2504 57 7 0 chr6 23155205 23155506 -159259736 + AluSp SINE Alu 1 303 -10 198 118 0 0 chr6 23155539 23155573 -159259669 + (TCCCC)n Simple_repeat Simple_repeat 4 37 0 1926 152 0 3 chr6 23155573 23155863 -159259379 - AluJb SINE Alu -23 289 1 219 293 28 28 chr6 23155864 23155970 -159259272 - L2 LINE L2 -303 2969 2864 669 119 0 0 chr6 23157778 23157879 -159257363 + AluJb SINE Alu 210 310 -2 2373 79 0 3 chr6 23158048 23158340 -159256902 - AluSg SINE Alu -19 291 1 286 344 68 21 chr6 23158492 23158684 -159256558 + MIR SINE MIR 6 206 -56 2288 78 3 3 chr6 23158696 23159013 -159256229 + AluSp SINE Alu 1 317 0 2102 115 0 44 chr6 23159907 23160228 -159255014 - AluSx SINE Alu -5 307 1 1682 150 18 81 chr6 23160293 23160431 -159254811 + AluJo SINE Alu 1 146 -166 261 0 0 0 chr6 23160431 23160460 -159254782 + (TA)n Simple_repeat Simple_repeat 1 29 0 1682 150 18 81 chr6 23160460 23160654 -159254588 + AluJo SINE Alu 146 312 0 770 214 92 6 chr6 23160857 23161030 -159254212 + MER5A DNA MER1_type 2 189 0 550 221 16 89 chr6 23161376 23161566 -159253676 - MER5B DNA MER1_type -2 176 1 2318 100 0 0 chr6 23162316 23162615 -159252627 + AluSg1 SINE Alu 1 299 -10 2206 73 35 7 chr6 23163251 23163537 -159251705 - AluSg SINE Alu -16 294 1 2125 119 3 13 chr6 23164234 23164536 -159250706 - AluSg SINE Alu -10 300 2 2296 94 0 7 chr6 23164961 23165260 -159249982 + AluSq SINE Alu 1 297 -16 216 200 0 0 chr6 23165404 23165449 -159249793 + T-rich Low_complexity Low_complexity 1 45 0 213 39 0 0 chr6 23165648 23165674 -159249568 + (TG)n Simple_repeat Simple_repeat 2 27 0 652 177 14 14 chr6 23165797 23165938 -159249304 - L1MB3 LINE L1 -2 6181 6041 1801 35 39 9 chr6 23165938 23166169 -159249073 + L1PA7 LINE L1 5915 6152 -2 2663 113 13 0 chr6 23166174 23166555 -159248687 - L1MB3 LINE L1 -130 6053 5668 2142 128 0 3 chr6 23166588 23166878 -159248364 - AluSq SINE Alu -24 289 1 2252 118 3 0 chr6 23167154 23167459 -159247783 + AluSq SINE Alu 1 306 -7 518 264 91 32 chr6 23167802 23168022 -159247220 - MIR SINE MIR -5 257 25 1720 151 49 30 chr6 23168026 23168330 -159246912 - AluJo SINE Alu -2 310 1 525 71 0 0 chr6 23168416 23168486 -159246756 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 2233 124 0 10 chr6 23168486 23168800 -159246442 - AluSx SINE Alu -1 311 1 21 36 0 0 chr6 23169199 23169227 -159246015 + AT_rich Low_complexity Low_complexity 1 28 0 1793 164 0 37 chr6 23169499 23169822 -159245420 - AluJo SINE Alu -1 311 1 524 240 65 37 chr6 23170012 23170229 -159245013 - L1MC4a LINE L1 -1764 6044 5822 363 154 0 0 chr6 23170240 23170305 -159244937 + (TA)n Simple_repeat Simple_repeat 2 66 0 280 207 98 0 chr6 23170307 23170389 -159244853 - L1MC4 LINE L1 -1339 6703 6614 1330 99 28 0 chr6 23170392 23170573 -159244669 - AluSg/x SINE Alu -7 303 118 442 201 33 113 chr6 23170573 23170590 -159244652 - L1MD2 LINE L1 -20 7960 7943 2048 130 0 17 chr6 23170590 23170891 -159244351 + AluSq SINE Alu 1 296 -17 442 201 33 113 chr6 23170891 23171001 -159244241 - L1MD2 LINE L1 -37 7943 7826 2307 104 3 3 chr6 23171001 23171310 -159243932 + AluSx SINE Alu 1 309 -3 442 201 33 113 chr6 23171310 23171412 -159243830 - L1MD2 LINE L1 -154 7826 6208 2354 147 14 14 chr6 23171449 23171877 -159243365 - L1MB4 LINE L1 -277 5903 5476 6533 66 18 47 chr6 23171976 23172958 -159242284 - SVA Other Other 0 1386 433 1592 82 7 36 chr6 23172975 23173254 -159241988 - SVA Other Other -520 866 596 5869 63 25 61 chr6 23173282 23174257 -159240985 - SVA Other Other -518 868 5 364 269 19 28 chr6 23174257 23174365 -159240877 - L1MD2 LINE L1 -217 6142 6036 1717 153 27 34 chr6 23174365 23174660 -159240582 - AluJo SINE Alu -16 296 4 2200 99 0 63 chr6 23175193 23175526 -159239716 + AluSx SINE Alu 1 312 0 213 280 65 11 chr6 23175576 23175669 -159239573 - MIR SINE MIR -79 183 86 1707 168 31 11 chr6 23175759 23176045 -159239197 + AluJb SINE Alu 1 292 -20 407 335 58 5 chr6 23176186 23176410 -159238832 + MIR SINE MIR 13 248 -14 191 205 0 0 chr6 23177456 23177495 -159237747 + MER5B DNA MER1_type 2 40 -138 191 304 0 0 chr6 23177520 23177566 -159237676 - MER5B DNA MER1_type -132 46 1 2418 70 3 10 chr6 23179081 23179381 -159235861 - AluY SINE Alu -11 300 3 324 0 0 0 chr6 23179422 23179458 -159235784 + (TG)n Simple_repeat Simple_repeat 1 36 0 893 215 0 0 chr6 23179458 23179616 -159235626 - FAM SINE Alu -17 158 1 2238 95 20 17 chr6 23179641 23179937 -159235305 - AluSx SINE Alu -15 297 1 185 0 40 0 chr6 23180278 23180303 -159234939 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2065 129 0 10 chr6 23180305 23180599 -159234643 - AluSq SINE Alu -22 291 1 500 176 0 0 chr6 23181357 23181442 -159233800 + AluY SINE Alu 209 293 -18 2370 97 3 0 chr6 23181453 23181763 -159233479 + AluSx SINE Alu 1 311 -1 1853 185 0 10 chr6 23181773 23182087 -159233155 + AluJb SINE Alu 1 311 -1 1099 91 0 0 chr6 23182122 23182254 -159232988 + AluSq/x SINE Alu 1 132 -181 201 39 0 0 chr6 23182408 23182434 -159232808 + (TA)n Simple_repeat Simple_repeat 1 26 0 2330 73 3 3 chr6 23182435 23182724 -159232518 - AluSp SINE Alu -24 289 1 2153 114 0 27 chr6 23182737 23183035 -159232207 - AluSq SINE Alu -23 290 1 26 0 0 0 chr6 23183106 23183132 -159232110 + AT_rich Low_complexity Low_complexity 1 26 0 1996 108 11 28 chr6 23183602 23183888 -159231354 + AluSq SINE Alu 13 293 -20 194 159 45 0 chr6 23185961 23186005 -159229237 + CT-rich Low_complexity Low_complexity 3 48 0 22 0 0 0 chr6 23186473 23186495 -159228747 + AT_rich Low_complexity Low_complexity 1 22 0 226 248 69 97 chr6 23186570 23186627 -159228615 + L1ME4a LINE L1 5975 6032 -89 2242 108 0 7 chr6 23186627 23186924 -159228318 - AluSx SINE Alu -12 300 6 226 248 69 97 chr6 23186924 23187011 -159228231 + L1ME4a LINE L1 6032 6115 -6 1605 165 10 34 chr6 23187297 23187429 -159227813 + AluJb SINE Alu 2 4294967113 -495 2248 110 3 13 chr6 23187429 23187947 -159227295 + AluSp SINE Alu 1 515 0 705 164 16 0 chr6 23188613 23188735 -159226507 - AluJb SINE Alu -8 304 181 2334 91 7 0 chr6 23188735 23189031 -159226211 - AluSg SINE Alu -12 298 1 216 0 0 0 chr6 23189031 23189055 -159226187 + (T)n Simple_repeat Simple_repeat 1 24 0 279 0 0 0 chr6 23189699 23189730 -159225512 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 200 33 0 chr6 23189910 23189970 -159225272 + MIR SINE MIR 86 147 -115 238 235 86 12 chr6 23190122 23190203 -159225039 + MIR3 SINE MIR 91 177 -31 1718 81 154 11 chr6 23190243 23190503 -159224739 - AluSg SINE Alu -3 297 1 570 41 0 0 chr6 23190754 23190827 -159224415 + AluY SINE Alu 222 294 -15 360 0 0 0 chr6 23191130 23191170 -159224072 + (TG)n Simple_repeat Simple_repeat 1 40 0 1883 116 45 0 chr6 23191170 23191438 -159223804 - AluSq SINE Alu -33 280 1 2211 127 0 0 chr6 23191728 23192028 -159223214 - AluSx SINE Alu -12 300 1 211 214 24 0 chr6 23193014 23193056 -159222186 + GA-rich Low_complexity Low_complexity 2 44 0 2345 92 3 3 chr6 23193180 23193486 -159221756 - AluSq SINE Alu -7 306 1 2213 117 3 0 chr6 23193488 23193787 -159221455 - AluSg SINE Alu -10 300 1 192 77 0 0 chr6 23194633 23194659 -159220583 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 599 205 70 119 chr6 23194869 23194940 -159220302 - L1ME2 LINE L1 -1 6163 6090 2305 94 7 3 chr6 23194940 23195247 -159219995 - AluSq SINE Alu -5 308 1 599 205 70 119 chr6 23195247 23195387 -159219855 - L1ME2 LINE L1 -74 6090 5969 201 39 0 0 chr6 23195387 23195413 -159219829 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 599 205 70 119 chr6 23195413 23195502 -159219740 - L1ME2 LINE L1 -195 5969 5877 1564 216 129 16 chr6 23195670 23195850 -159219392 - L1MD2 LINE L1 -8 6351 6193 204 40 0 0 chr6 23195850 23195875 -159219367 + (TG)n Simple_repeat Simple_repeat 2 26 0 1564 216 129 16 chr6 23195875 23196110 -159219132 - L1MD2 LINE L1 -166 6193 5885 1920 151 0 22 chr6 23196110 23196422 -159218820 - AluSx SINE Alu -7 305 1 934 149 65 0 chr6 23196422 23196590 -159218652 - L1MD2 LINE L1 -877 5482 5304 2634 67 0 13 chr6 23196607 23196922 -159218320 + AluSp SINE Alu 1 311 -2 2150 143 0 0 chr6 23197219 23197527 -159217715 - AluSq SINE Alu -5 308 1 378 243 90 30 chr6 23197886 23198074 -159217168 + MIR SINE MIR 17 212 -50 2138 122 0 35 chr6 23198256 23198575 -159216667 - AluSg SINE Alu -1 309 2 192 222 62 49 chr6 23198865 23198946 -159216296 + MIR SINE MIR 34 115 -93 2077 128 0 10 chr6 23199496 23199802 -159215440 + AluY SINE Alu 1 303 -8 459 243 108 60 chr6 23200940 23201208 -159214034 + L2 LINE L2 3033 3313 0 191 238 0 0 chr6 23201665 23201707 -159213535 + MIR SINE MIR 30 71 -137 2388 101 0 0 chr6 23201827 23202125 -159213117 - AluSx SINE Alu -14 298 1 432 0 0 0 chr6 23202210 23202258 -159212984 + (TG)n Simple_repeat Simple_repeat 2 49 0 671 242 6 22 chr6 23202759 23202941 -159212301 + MER5A DNA MER1_type 7 185 -4 1780 149 54 0 chr6 23203012 23203308 -159211934 - AluSx SINE Alu 0 312 1 180 289 0 0 chr6 23204697 23204749 -159210493 + MIR SINE MIR 156 207 -55 362 205 131 16 chr6 23206151 23206273 -159208969 + MIR SINE MIR 69 204 -58 2262 123 3 0 chr6 23206567 23206876 -159208366 + AluSq SINE Alu 1 310 -3 311 148 0 45 chr6 23206925 23207013 -159208229 + (TCTCC)n Simple_repeat Simple_repeat 3 86 0 1794 178 0 7 chr6 23207016 23207308 -159207934 - AluJb SINE Alu -18 294 5 21 36 0 0 chr6 23208895 23208923 -159206319 + AT_rich Low_complexity Low_complexity 1 28 0 2248 85 29 0 chr6 23209170 23209451 -159205791 + AluSx SINE Alu 1 289 -23 2151 256 79 24 chr6 23209531 23210241 -159205001 + MER20B DNA MER1_type 35 783 0 234 357 10 10 chr6 23210291 23210389 -159204853 + MER5A DNA MER1_type 4 101 -88 2424 90 3 3 chr6 23210451 23210763 -159204479 - AluSx SINE Alu 0 312 1 2140 138 0 13 chr6 23210890 23211202 -159204040 + AluSx SINE Alu 1 308 -4 228 325 145 35 chr6 23211268 23211674 -159203568 - L2 LINE L2 -691 2623 2173 2122 111 7 10 chr6 23211895 23212192 -159203050 - AluSx SINE Alu -16 296 1 1888 144 10 13 chr6 23213981 23214294 -159200948 - AluJb SINE Alu 0 312 1 238 215 25 0 chr6 23214457 23214536 -159200706 + (TA)n Simple_repeat Simple_repeat 1 81 0 282 326 142 0 chr6 23214615 23214756 -159200486 - MER91A DNA MER1_type -35 161 1 1782 149 14 35 chr6 23214873 23215191 -159200051 - AluJo SINE Alu 0 312 1 2329 112 3 0 chr6 23215551 23215863 -159199379 + AluSq SINE Alu 1 313 0 226 196 246 36 chr6 23216058 23216196 -159199046 - L1MA10 LINE L1 0 6334 6168 584 135 0 0 chr6 23216210 23216299 -159198943 - AluSg/x SINE Alu -4 305 217 1747 187 35 16 chr6 23216319 23216694 -159198548 - L1MB1 LINE L1 -15 6174 5793 2035 118 42 0 chr6 23217490 23217777 -159197465 + AluSx SINE Alu 1 299 -13 2278 135 0 0 chr6 23218004 23218316 -159196926 - AluSx SINE Alu 0 312 1 1345 132 0 85 chr6 23218508 23218619 -159196623 + MER46A DNA MER2_type 1 80 -2651 1844 124 40 11 chr6 23218619 23218921 -159196321 - AluSq SINE Alu 0 310 1 1345 132 0 85 chr6 23218921 23219066 -159196176 + MER46A DNA MER2_type 80 236 0 21 0 0 0 chr6 23221347 23221368 -159193874 + AT_rich Low_complexity Low_complexity 1 21 0 291 54 0 0 chr6 23221867 23221904 -159193338 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 189 0 0 0 chr6 23222407 23222428 -159192814 + (TG)n Simple_repeat Simple_repeat 1 21 0 219 259 0 0 chr6 23224798 23224852 -159190390 + MER5B DNA MER1_type 1 54 -124 2101 147 0 3 chr6 23224860 23225172 -159190070 + AluJb SINE Alu 1 311 -1 1366 175 4 22 chr6 23225175 23225404 -159189838 + AluJo SINE Alu 6 230 -82 221 157 0 59 chr6 23225936 23225987 -159189255 + GA-rich Low_complexity Low_complexity 4 51 0 1962 134 81 85 chr6 23226099 23226504 -159188738 + Tigger2a DNA MER2_type 3 407 -2301 2289 114 0 0 chr6 23226504 23226803 -159188439 - AluSq SINE Alu -14 299 1 1962 134 81 85 chr6 23226803 23226831 -159188411 + Tigger2a DNA MER2_type 407 434 0 207 0 0 0 chr6 23227515 23227538 -159187704 + (T)n Simple_repeat Simple_repeat 1 23 0 2945 97 22 48 chr6 23227538 23228712 -159186530 - SVA Other Other -799 1047 432 426 20 0 0 chr6 23229447 23229498 -159185744 + (TGG)n Simple_repeat Simple_repeat 3 53 0 2003 176 34 10 chr6 23230059 23230473 -159184769 + L1MB3 LINE L1 5718 6141 -42 871 117 95 0 chr6 23230474 23230611 -159184631 + AluSg/x SINE Alu 146 295 -15 306 0 0 0 chr6 23230634 23230668 -159184574 + (TA)n Simple_repeat Simple_repeat 1 34 0 2495 61 3 0 chr6 23230700 23230994 -159184248 - AluSg SINE Alu -14 296 2 1925 152 3 3 chr6 23231447 23231737 -159183505 + AluJo SINE Alu 7 296 -16 255 196 0 0 chr6 23231787 23231843 -159183399 - MER5A DNA MER1_type -83 106 51 457 254 90 16 chr6 23231877 23232066 -159183176 - HAL1 LINE L1 -2256 251 49 199 227 0 0 chr6 23232234 23232278 -159182964 - MIR SINE MIR -6 256 213 2060 181 98 65 chr6 23232691 23233295 -159181947 + MLT1E2 LTR MaLR 1 626 0 224 295 213 8 chr6 23233477 23233599 -159181643 + MIR3 SINE MIR 20 166 -42 610 115 21 21 chr6 23233845 23233941 -159181301 + AluSq/x SINE Alu 39 134 -179 2232 94 0 33 chr6 23233944 23234251 -159180991 + AluSq SINE Alu 6 302 -11 896 199 6 0 chr6 23234987 23235153 -159180089 + FRAM SINE Alu 4 170 -6 234 0 0 0 chr6 23236094 23236120 -159179122 + (TG)n Simple_repeat Simple_repeat 1 26 0 1779 132 16 0 chr6 23236120 23236371 -159178871 - AluSx SINE Alu -33 279 25 2243 112 0 0 chr6 23236801 23237095 -159178147 + AluSx SINE Alu 1 294 -18 961 222 15 15 chr6 23237480 23237683 -159177559 - MLT1A2 LTR MaLR 0 374 172 842 208 5 68 chr6 23237704 23237751 -159177491 - MLT1A2 LTR MaLR -171 194 146 2374 100 0 3 chr6 23237751 23238060 -159177182 - AluSp SINE Alu -5 308 1 842 208 5 68 chr6 23238060 23238219 -159177023 - MLT1A2 LTR MaLR -219 146 1 245 0 27 27 chr6 23238347 23238384 -159176858 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2263 102 0 3 chr6 23238384 23238669 -159176573 - AluSq SINE Alu -1 320 1 2282 102 0 23 chr6 23238872 23239177 -159176065 + AluSg SINE Alu 1 298 -12 395 331 19 6 chr6 23239267 23239427 -159175815 + MIR SINE MIR 35 196 -66 1793 157 7 4 chr6 23239452 23239756 -159175486 + AluJb SINE Alu 1 305 0 2076 116 3 46 chr6 23239870 23240197 -159175045 + AluSq SINE Alu 1 313 0 402 273 15 0 chr6 23240198 23240325 -159174917 + MIR SINE MIR 23 152 -62 2400 103 0 0 chr6 23241108 23241418 -159173824 - AluSg SINE Alu 0 310 1 2198 98 7 0 chr6 23241749 23242063 -159173179 + AluSx SINE Alu 1 316 0 2381 94 3 0 chr6 23242868 23243166 -159172076 + AluSp SINE Alu 1 299 -14 2088 105 61 0 chr6 23243264 23243559 -159171683 + AluSq SINE Alu 1 313 0 1862 150 7 3 chr6 23243569 23243876 -159171366 + AluSx SINE Alu 1 308 -4 1301 167 13 0 chr6 23243877 23244111 -159171131 + L1MD3 LINE L1 7746 7982 -13 749 124 0 0 chr6 23244135 23244240 -159171002 + FLAM_C SINE Alu 2 106 -37 2269 95 7 13 chr6 23245554 23245859 -159169383 - AluSx SINE Alu -9 303 1 340 221 87 55 chr6 23246821 23246948 -159168294 - MIR SINE MIR -60 148 18 1028 143 0 12 chr6 23247354 23247515 -159167727 - AluSg/x SINE Alu -13 297 139 2196 95 25 0 chr6 23248163 23248446 -159166796 - AluSx SINE Alu -22 290 1 312 336 23 0 chr6 23249872 23250000 -159165242 + MIR3 SINE MIR 78 208 0 22 0 0 0 chr6 23250215 23250237 -159165005 + AT_rich Low_complexity Low_complexity 1 22 0 14711 199 43 17 chr6 23250432 23254770 -159160472 + L1PB1 LINE L1 6 4234 -2633 2200 115 0 3 chr6 23254770 23255066 -159160176 + AluSg SINE Alu 1 295 -15 14711 199 43 17 chr6 23255066 23255398 -159159844 + L1PB1 LINE L1 4234 4556 -2311 2074 112 42 0 chr6 23255398 23255685 -159159557 + AluSc SINE Alu 1 299 -10 14711 199 43 17 chr6 23255685 23256107 -159159135 + L1PB1 LINE L1 4556 4966 -1901 2074 127 19 3 chr6 23256107 23256414 -159158828 + AluSx SINE Alu 1 312 0 14711 199 43 17 chr6 23256414 23257846 -159157396 + L1PB1 LINE L1 4966 6865 -2 2014 145 17 7 chr6 23257990 23258157 -159157085 - AluSx SINE Alu -12 300 127 2023 128 6 31 chr6 23258157 23258478 -159156764 - AluSp SINE Alu 0 313 1 2014 145 17 7 chr6 23258478 23258607 -159156635 - AluSx SINE Alu -185 127 1 2127 131 3 6 chr6 23259670 23259983 -159155259 - AluSx SINE Alu 0 312 1 356 278 247 11 chr6 23263632 23263895 -159151347 - L2 LINE L2 -819 2495 2171 2205 109 10 10 chr6 23264872 23265176 -159150066 - AluSp SINE Alu -9 304 1 1768 80 0 13 chr6 23265950 23266175 -159149067 - AluY SINE Alu -7 304 83 2128 113 35 0 chr6 23266502 23266785 -159148457 + AluSx SINE Alu 2 294 -18 2308 67 14 3 chr6 23266791 23267073 -159148169 + AluSp SINE Alu 20 304 -9 2036 116 0 11 chr6 23267423 23267744 -159147498 + AluSx SINE Alu 1 318 0 226 122 0 24 chr6 23267887 23267928 -159147314 - LTR16A1 LTR ERVL -361 96 57 388 280 96 75 chr6 23267973 23268378 -159146864 + L2 LINE L2 2781 3221 -92 1832 148 0 0 chr6 23268492 23268762 -159146480 - AluSx SINE Alu -10 302 33 1993 146 17 50 chr6 23268928 23269290 -159145952 + MER4D LTR ERV1 554 903 0 644 234 114 0 chr6 23269292 23269459 -159145783 - L1MB3 LINE L1 -154 6029 5844 5116 132 63 9 chr6 23269596 23270435 -159144807 + MER4D LTR ERV1 1 884 -19 2423 87 0 0 chr6 23270440 23270740 -159144502 - AluSq SINE Alu -13 300 1 918 191 13 74 chr6 23271392 23271623 -159143619 - AluJo SINE Alu -9 303 87 2468 54 3 3 chr6 23272651 23272949 -159142293 + AluSp SINE Alu 1 298 -15 180 0 0 0 chr6 23273788 23273808 -159141434 + (TG)n Simple_repeat Simple_repeat 1 20 0 1518 149 23 50 chr6 23273878 23274179 -159141063 + AluJb SINE Alu 1 293 -19 342 0 0 0 chr6 23274701 23274739 -159140503 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1641 160 80 0 chr6 23274741 23275029 -159140213 - AluSx SINE Alu -1 311 1 278 339 80 9 chr6 23275223 23275335 -159139907 + L2 LINE L2 3148 3267 -5 21 36 0 0 chr6 23275586 23275614 -159139628 + AT_rich Low_complexity Low_complexity 1 28 0 256 180 20 0 chr6 23276971 23277021 -159138221 + LTR16C LTR ERVL 71 121 -370 424 179 152 0 chr6 23279619 23279731 -159135511 - L1MB4 LINE L1 -2 6178 6050 1416 126 50 14 chr6 23280796 23281018 -159134224 - MER30 DNA MER1_type 0 230 1 1263 125 0 6 chr6 23281105 23281281 -159133961 + AluJo SINE Alu 1 175 -137 1586 223 142 15 chr6 23281515 23282024 -159133218 - MLT1F1 LTR MaLR 0 567 1 2667 42 0 0 chr6 23282178 23282486 -159132756 - AluY SINE Alu -3 308 1 837 241 111 31 chr6 23282504 23282794 -159132448 - MSTD LTR MaLR -51 345 21 652 239 171 14 chr6 23282812 23283034 -159132208 - MIR SINE MIR -1 261 5 434 338 61 3 chr6 23283089 23283382 -159131860 - L1ME3A LINE L1 -208 5962 5653 2471 138 59 7 chr6 23283491 23283896 -159131346 + MSTA LTR MaLR 1 426 -2 1584 157 20 24 chr6 23283907 23284201 -159131041 - MLT1B LTR MaLR 0 390 98 920 138 0 8 chr6 23284208 23284338 -159130904 - FLAM_C SINE Alu -14 129 1 744 135 0 0 chr6 23284338 23284442 -159130800 - MLT1B LTR MaLR -281 109 6 543 130 0 22 chr6 23284489 23284581 -159130661 + MER65A LTR ERV1 1 90 -355 348 188 0 0 chr6 23284585 23284649 -159130593 + FLAM SINE Alu 69 132 -1 2016 77 0 40 chr6 23287572 23287846 -159127396 + AluY SINE Alu 35 297 -14 359 253 0 21 chr6 23288571 23288666 -159126576 + L3 LINE CR1 1481 1573 -4 309 89 0 0 chr6 23288971 23289016 -159126226 + (TG)n Simple_repeat Simple_repeat 2 46 0 229 316 97 26 chr6 23289471 23289585 -159125657 - L2 LINE L2 -6 3266 3145 260 27 27 0 chr6 23289782 23289819 -159125423 + (GA)n Simple_repeat Simple_repeat 1 38 0 332 279 27 108 chr6 23289898 23290120 -159125122 + MIR SINE MIR 6 209 -53 2114 90 0 21 chr6 23290123 23290438 -159124804 + AluY SINE Alu 1 309 0 2085 116 0 3 chr6 23290441 23290768 -159124474 + AluSx SINE Alu 1 326 0 394 216 11 11 chr6 23291234 23291322 -159123920 + L2 LINE L2 3224 3311 -2 206 361 83 10 chr6 23291328 23291533 -159123709 - L2 LINE L2 -25 3247 3028 554 211 23 76 chr6 23291569 23291660 -159123582 + MER97b DNA MER1_type? 13 92 -961 1778 123 80 4 chr6 23291660 23291936 -159123306 + AluSg SINE Alu 7 303 -7 554 211 23 76 chr6 23291936 23292015 -159123227 + MER97b DNA MER1_type? 92 174 -879 2061 84 40 0 chr6 23292017 23292325 -159122917 + AluSq SINE Alu 1 319 0 924 138 0 8 chr6 23292401 23292531 -159122711 + AluSg SINE Alu 6 134 -176 2090 114 3 26 chr6 23292531 23292838 -159122404 + AluSx SINE Alu 1 300 -12 2373 93 7 0 chr6 23292838 23293139 -159122103 + AluSp SINE Alu 1 303 -10 1899 140 0 0 chr6 23294647 23294919 -159120323 + AluSp SINE Alu 1 272 -41 546 310 29 8 chr6 23295161 23295403 -159119839 - L2 LINE L2 -1242 2072 1826 412 254 79 9 chr6 23295489 23295603 -159119639 + MIR SINE MIR 78 199 -63 2561 165 22 40 chr6 23295723 23296226 -159119016 - L1MB2 LINE L1 -2 6169 5676 2408 89 3 6 chr6 23296787 23297100 -159118142 + AluSx SINE Alu 1 312 0 2449 70 3 0 chr6 23297223 23297522 -159117720 - AluSc SINE Alu -9 300 1 1766 173 7 7 chr6 23297528 23297828 -159117414 - AluJo SINE Alu -12 300 1 1943 109 88 0 chr6 23299029 23299314 -159115928 - AluSp SINE Alu -2 311 2 207 0 0 0 chr6 23301354 23301377 -159113865 + (TA)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr6 23301428 23301456 -159113786 + (CA)n Simple_repeat Simple_repeat 2 29 0 2077 110 0 28 chr6 23305104 23305422 -159109820 - AluSq SINE Alu 0 311 2 2240 112 0 3 chr6 23305640 23305943 -159109299 + AluSc SINE Alu 1 302 -7 1646 155 34 34 chr6 23305954 23306250 -159108992 + AluJb SINE Alu 1 296 -16 689 252 53 0 chr6 23307052 23307203 -159108039 + MIR SINE MIR 3 161 -101 353 338 96 0 chr6 23308730 23308866 -159106376 - MIR SINE MIR -112 150 2 2203 119 13 7 chr6 23308953 23309263 -159105979 + AluSx SINE Alu 1 312 0 3113 132 17 25 chr6 23310075 23310553 -159104689 + MER101 LTR ERV1 1 474 0 449 280 104 26 chr6 23310633 23310828 -159104414 - MIR SINE MIR -7 255 46 367 294 37 0 chr6 23311552 23311661 -159103581 + MIR SINE MIR 113 225 -37 2358 100 7 0 chr6 23311845 23312155 -159103087 - AluSp SINE Alu -1 312 1 261 293 49 0 chr6 23313934 23314016 -159101226 + MIR SINE MIR 43 128 -80 947 237 25 25 chr6 23314025 23314261 -159100981 - MER115 DNA AcHobo 0 693 458 2269 84 7 0 chr6 23314614 23314899 -159100343 + AluSp SINE Alu 1 287 -26 599 208 9 0 chr6 23315408 23315514 -159099728 - AluSq/x SINE Alu -205 108 2 189 0 0 0 chr6 23315540 23315561 -159099681 + (A)n Simple_repeat Simple_repeat 1 21 0 1829 117 41 0 chr6 23315664 23315930 -159099312 - AluSq SINE Alu -32 281 5 1994 129 6 13 chr6 23315989 23316300 -159098942 - AluSq SINE Alu -4 309 1 232 222 69 0 chr6 23316394 23316466 -159098776 - L1ME LINE L1 -395 5726 5650 386 242 84 47 chr6 23316534 23316806 -159098436 - L1ME3A LINE L1 -4 6166 5839 2256 112 0 0 chr6 23316846 23317151 -159098091 - AluSq SINE Alu -8 305 1 1537 181 29 7 chr6 23317230 23317507 -159097735 - AluJo SINE Alu -29 283 1 422 189 0 22 chr6 23317507 23317597 -159097645 - L1ME3A LINE L1 -738 5440 5353 398 151 161 0 chr6 23317608 23317701 -159097541 - L1MA4 LINE L1 -1 6299 6192 * 953 272 46 48 chr6 23317692 23317772 -159097470 - L1ME3A LINE L1 -780 5366 5287 2368 63 7 3 chr6 23317772 23318071 -159097171 - AluY SINE Alu -11 300 1 953 272 46 48 chr6 23318071 23318486 -159096756 - L1ME3A LINE L1 -859 5287 4872 708 242 46 16 chr6 23319893 23320087 -159095155 - MIR SINE MIR 0 262 63 2638 59 3 0 chr6 23320151 23320457 -159094785 - AluSp SINE Alu -6 307 1 1855 102 88 0 chr6 23320703 23320977 -159094265 - AluSg SINE Alu -12 298 1 2202 119 0 0 chr6 23320979 23321272 -159093970 - AluSg SINE Alu -16 294 2 1882 160 10 0 chr6 23321376 23321664 -159093578 - AluJb SINE Alu -21 291 1 22 35 0 0 chr6 23321880 23321909 -159093333 + AT_rich Low_complexity Low_complexity 1 29 0 2338 83 0 20 chr6 23322147 23322447 -159092795 - AluSg SINE Alu -16 294 1 450 288 112 38 chr6 23322472 23322785 -159092457 - L1ME3 LINE L1 -206 5956 5621 892 212 27 54 chr6 23323178 23323400 -159091842 + MER20 DNA MER1_type 1 216 -3 342 247 0 0 chr6 23323406 23323479 -159091763 + MER20 DNA MER1_type 134 206 -13 1950 145 7 3 chr6 23323546 23323835 -159091407 + AluJb SINE Alu 1 290 -22 283 176 39 0 chr6 23326465 23326516 -159088726 + MIR SINE MIR 77 129 -133 2379 68 7 3 chr6 23326605 23326901 -159088341 - AluSc SINE Alu -12 297 1 879 235 6 0 chr6 23327381 23327560 -159087682 + MER58A DNA MER1_type 44 223 -1 342 0 0 0 chr6 23327616 23327654 -159087588 + (CA)n Simple_repeat Simple_repeat 2 39 0 182 214 24 0 chr6 23328605 23328647 -159086595 + MIR SINE MIR 214 256 -6 238 354 52 0 chr6 23328766 23328862 -159086380 - L2 LINE L2 -35 3237 3137 1217 202 48 61 chr6 23329022 23329357 -159085885 + MLT1A1 LTR MaLR 1 361 -35 1528 189 25 4 chr6 23329357 23329637 -159085605 - AluJo SINE Alu -26 286 1 313 209 15 0 chr6 23329637 23329704 -159085538 + MLT1A1 LTR MaLR 298 365 0 201 74 0 0 chr6 23330178 23330205 -159085037 + (CA)n Simple_repeat Simple_repeat 2 28 0 285 311 102 85 chr6 23331409 23331714 -159083528 - L2 LINE L2 -1 3271 2962 192 239 42 28 chr6 23331714 23331785 -159083457 + L2 LINE L2 2887 2958 -356 431 257 18 1 chr6 23332414 23332534 -159082708 - L1ME3A LINE L1 -5 6157 6038 2281 86 3 46 chr6 23332633 23332917 -159082325 + AluSp SINE Alu 1 271 -42 213 39 0 0 chr6 23332917 23332943 -159082299 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2281 86 3 46 chr6 23332943 23332985 -159082257 + AluSp SINE Alu 271 313 0 686 270 41 10 chr6 23333379 23333575 -159081667 + MIR SINE MIR 47 248 -14 1451 188 30 13 chr6 23333933 23334231 -159081011 + AluJo SINE Alu 10 312 0 1499 178 7 22 chr6 23334612 23334882 -159080360 - AluJo SINE Alu -46 266 1 1911 66 4 0 chr6 23335262 23335489 -159079753 - AluSx SINE Alu -84 228 1 183 162 0 0 chr6 23335639 23335676 -159079566 + (TATG)n Simple_repeat Simple_repeat 3 39 0 381 225 39 126 chr6 23335735 23335917 -159079325 - MIR SINE MIR -78 184 19 204 37 0 0 chr6 23335961 23335970 -159079272 + (CAA)n Simple_repeat Simple_repeat 3 11 -18 2310 56 7 3 chr6 23335970 23336257 -159078985 + AluY SINE Alu 1 288 -23 204 37 0 0 chr6 23336257 23336274 -159078968 + (CAA)n Simple_repeat Simple_repeat 10 29 0 2487 65 3 3 chr6 23336939 23337245 -159077997 + AluSx SINE Alu 1 306 -6 270 0 0 0 chr6 23337245 23337275 -159077967 + (TA)n Simple_repeat Simple_repeat 2 31 0 323 306 40 81 chr6 23337280 23337368 -159077874 - L3 LINE CR1 -637 940 850 1730 182 3 0 chr6 23337368 23337654 -159077588 - AluJo SINE Alu -21 291 5 323 306 40 81 chr6 23337654 23337787 -159077455 - L3 LINE CR1 -727 850 728 2483 84 0 0 chr6 23338094 23338402 -159076840 - AluSg SINE Alu -2 308 1 1388 69 6 0 chr6 23338633 23338808 -159076434 - AluY SINE Alu -6 305 130 2330 85 0 3 chr6 23338881 23339174 -159076068 - AluSc SINE Alu -17 292 1 1106 107 0 156 chr6 23339174 23339342 -159075900 - AluSg SINE Alu -177 133 1 193 211 0 0 chr6 23339342 23339380 -159075862 - L3 LINE CR1 -911 666 629 636 294 132 41 chr6 23339483 23340309 -159074933 - L1MEc LINE L1 -4639 1757 857 21 0 0 0 chr6 23341724 23341745 -159073497 + AT_rich Low_complexity Low_complexity 1 21 0 2305 102 0 3 chr6 23341758 23342062 -159073180 - AluSg SINE Alu -7 303 1 1986 122 4 4 chr6 23342245 23342523 -159072719 - AluSx SINE Alu -12 300 23 337 266 79 36 chr6 23342564 23342703 -159072539 - L2 LINE L2 -8 3305 3161 2257 81 0 36 chr6 23342965 23343272 -159071970 + AluSg SINE Alu 1 296 -14 1804 158 21 0 chr6 23343359 23343644 -159071598 - Tigger3(Golem) DNA MER2_type -1 3028 2738 2259 103 0 3 chr6 23343644 23343954 -159071288 + AluY SINE Alu 1 309 -2 812 148 75 37 chr6 23343954 23344202 -159071040 - Tigger3(Golem) DNA MER2_type -574 2455 19 23 33 0 0 chr6 23345089 23345119 -159070123 + AT_rich Low_complexity Low_complexity 1 30 0 277 274 67 19 chr6 23345154 23345291 -159069951 + MIR3 SINE MIR 58 205 -3 205 292 14 28 chr6 23345411 23345483 -159069759 - MER5B DNA MER1_type -45 133 63 2304 99 0 0 chr6 23345489 23345791 -159069451 - AluSg SINE Alu -8 302 1 672 193 6 17 chr6 23346812 23346993 -159068249 + (TGG)n Simple_repeat Simple_repeat 1 179 0 * 715 128 41 21 chr6 23346978 23347221 -159068021 + (ATGGTG)n Simple_repeat Simple_repeat 1 248 0 1561 158 55 22 chr6 23347871 23348144 -159067098 + AluJb SINE Alu 7 288 -24 1775 118 0 0 chr6 23348742 23348980 -159066262 - AluSx SINE Alu -28 284 47 2266 108 0 3 chr6 23348988 23349285 -159065957 - AluSx SINE Alu -16 296 1 2304 123 0 0 chr6 23350516 23350824 -159064418 - AluSx SINE Alu -4 308 1 310 322 301 0 chr6 23351124 23351270 -159063972 + L2 LINE L2 3080 3269 -3 1200 118 139 224 chr6 23351798 23352266 -159062976 - MSTA LTR MaLR 0 428 1 1340 226 50 77 chr6 23352600 23352967 -159062275 - L1M4 LINE L1 -3264 2882 2530 1993 156 0 3 chr6 23352967 23353274 -159061968 - AluSx SINE Alu -6 306 1 1340 226 50 77 chr6 23353274 23353402 -159061840 - L1M4 LINE L1 -3616 2530 2400 2108 122 0 10 chr6 23353411 23353715 -159061527 - AluSx SINE Alu -11 301 1 2538 210 59 36 chr6 23353715 23354397 -159060845 - L1MD2 LINE L1 -70 6683 6018 2272 105 3 3 chr6 23354397 23354701 -159060541 + AluSg SINE Alu 2 305 -5 2538 210 59 36 chr6 23354701 23355015 -159060227 - L1MD2 LINE L1 -735 6018 5713 1766 162 54 3 chr6 23355015 23355311 -159059931 - AluJo SINE Alu -1 311 1 2538 210 59 36 chr6 23355311 23355900 -159059342 - L1MD2 LINE L1 -1040 5713 5139 2033 85 48 4 chr6 23355900 23356208 -159059034 - AluY SINE Alu 0 320 1 2538 210 59 36 chr6 23356208 23356412 -159058830 - L1MD2 LINE L1 -1614 5139 1705 611 209 7 2 chr6 23356409 23356565 -159058677 - L1MB4 LINE L1 0 6174 6012 * 349 241 155 0 chr6 23356545 23356661 -159058581 - L1MD2 LINE L1 -4823 1717 1584 * 1424 94 0 0 chr6 23356670 23356850 -159058392 - AluSg/x SINE Alu -3 309 130 2288 110 0 0 chr6 23356855 23357156 -159058086 - AluSx SINE Alu -11 301 1 1541 246 9 97 chr6 23357198 23357880 -159057362 - L1MD2 LINE L1 -4995 1548 927 273 348 41 37 chr6 23358478 23358722 -159056520 - L1MD2 LINE L1 -6279 261 17 1492 174 87 24 chr6 23358947 23359234 -159056008 + AluJo SINE Alu 1 305 -7 232 277 54 84 chr6 23359620 23359786 -159055456 - LTR33A LTR ERVL -6 517 357 233 234 62 31 chr6 23359949 23360013 -159055229 - LTR33A LTR ERVL -401 122 57 213 288 68 27 chr6 23360139 23360212 -159055030 + L2 LINE L2 3153 3228 -44 2388 92 0 0 chr6 23360532 23360835 -159054407 + AluSg SINE Alu 1 303 -7 315 250 90 10 chr6 23361309 23361409 -159053833 - MIR SINE MIR -14 248 141 2162 133 0 0 chr6 23361409 23361718 -159053524 - AluSx SINE Alu -3 309 1 24 0 0 0 chr6 23362465 23362489 -159052753 + AT_rich Low_complexity Low_complexity 1 24 0 350 250 24 65 chr6 23364708 23364832 -159050410 - L2 LINE L2 0 3313 3195 626 245 63 0 chr6 23365297 23365440 -159049802 + Charlie1 DNA MER1_type 2 153 -2608 2266 189 84 60 chr6 23365444 23365915 -159049327 + Charlie1 DNA MER1_type 2080 2538 -223 2043 134 0 0 chr6 23365915 23366207 -159049035 - AluSx SINE Alu -20 292 1 2266 189 84 60 chr6 23366207 23366341 -159048901 + Charlie1 DNA MER1_type 2538 2705 -56 843 154 15 0 chr6 23366341 23366471 -159048771 - FLAM_A SINE Alu -1 132 1 2266 189 84 60 chr6 23366471 23366530 -159048712 + Charlie1 DNA MER1_type 2705 2761 0 193 229 217 12 chr6 23367231 23367314 -159047928 + L2 LINE L2 2694 2793 -521 189 0 0 0 chr6 23367762 23367783 -159047459 + (TG)n Simple_repeat Simple_repeat 2 22 0 1760 182 22 14 chr6 23368249 23368620 -159046622 - MLT1A1 LTR MaLR 0 365 1 232 296 14 0 chr6 23368678 23368749 -159046493 + (ATGGTG)n Simple_repeat Simple_repeat 3 74 0 465 257 69 57 chr6 23368811 23368986 -159046256 - MIR SINE MIR -70 192 16 1620 155 3 71 chr6 23369571 23369880 -159045362 + AluJo SINE Alu 4 291 -21 338 347 8 8 chr6 23369930 23370051 -159045191 + MIR SINE MIR 33 153 -55 182 91 30 0 chr6 23370337 23370370 -159044872 + CT-rich Low_complexity Low_complexity 1 34 0 4406 240 58 17 chr6 23370416 23370646 -159044596 + L1MC4 LINE L1 6464 6683 -1359 356 71 18 0 chr6 23370646 23370702 -159044540 + (CA)n Simple_repeat Simple_repeat 1 57 0 4406 240 58 17 chr6 23370702 23371694 -159043548 + L1MC4 LINE L1 6683 7736 -306 360 273 0 0 chr6 23371685 23371773 -159043469 + L1MC4 LINE L1 7955 8042 0 * 860 255 59 8 chr6 23372089 23372328 -159042914 + MIR SINE MIR 12 262 0 1690 56 0 73 chr6 23372392 23372505 -159042737 + L1PA8 LINE L1 5956 6045 -127 2133 114 20 3 chr6 23372505 23372804 -159042438 + AluSg SINE Alu 3 306 -4 1690 56 0 73 chr6 23372804 23372924 -159042318 + L1PA8 LINE L1 6045 6172 0 320 268 28 0 chr6 23374189 23374260 -159040982 + MIR SINE MIR 14 86 -176 2140 149 0 0 chr6 23374309 23374618 -159040624 + AluSx SINE Alu 1 309 -3 2319 79 6 19 chr6 23375076 23375393 -159039849 + AluSq SINE Alu 1 313 0 1438 186 65 21 chr6 23375483 23375774 -159039468 - AluJo SINE Alu -8 304 1 3918 183 5 32 chr6 23377934 23378684 -159036558 - L1MB7 LINE L1 -19 6165 5436 225 289 98 123 chr6 23378733 23378771 -159036471 + L2 LINE L2 3036 3073 -199 2180 133 50 42 chr6 23378771 23379132 -159036110 - THE1B LTR MaLR 0 364 1 225 289 98 123 chr6 23379132 23379297 -159035945 + L2 LINE L2 3073 3234 -38 2355 95 3 0 chr6 23379473 23379777 -159035465 - AluSp SINE Alu -4 309 5 308 309 53 0 chr6 23380932 23381026 -159034216 + MIR SINE MIR 48 146 -116 2538 51 0 0 chr6 23381459 23381755 -159033487 - AluY SINE Alu -15 296 1 25 0 0 0 chr6 23381765 23381790 -159033452 + AT_rich Low_complexity Low_complexity 1 25 0 526 240 40 7 chr6 23381848 23381998 -159033244 - L1MD3 LINE L1 -5 7990 7836 379 308 60 14 chr6 23382108 23382273 -159032969 + MIR SINE MIR 12 186 -67 186 340 0 0 chr6 23382328 23382378 -159032864 - L3b LINE CR1 -255 1328 1279 447 259 74 19 chr6 23383689 23383851 -159031391 - MER112 DNA MER1_type 0 260 90 545 293 73 61 chr6 23384057 23385041 -159030201 - L1ME3A LINE L1 -233 5937 4924 366 261 65 65 chr6 23385065 23385232 -159030010 - L1ME3A LINE L1 -1325 4821 4652 2266 117 0 0 chr6 23385232 23385539 -159029703 - AluSx SINE Alu -5 307 1 366 261 65 65 chr6 23385539 23385696 -159029546 - L1ME3A LINE L1 -1493 4653 4497 1412 161 27 0 chr6 23385921 23386144 -159029098 + MER46A DNA MER2_type 8 236 0 387 41 0 0 chr6 23387018 23387067 -159028175 + (TG)n Simple_repeat Simple_repeat 1 49 0 352 328 91 20 chr6 23387630 23387828 -159027414 + MIR SINE MIR 32 243 -19 305 262 0 0 chr6 23388106 23388167 -159027075 + L2 LINE L2 3148 3208 -64 187 286 29 0 chr6 23389509 23389579 -159025663 - MIR SINE MIR -27 235 164 330 87 0 0 chr6 23390270 23390316 -159024926 + (TG)n Simple_repeat Simple_repeat 2 47 0 298 270 27 36 chr6 23390629 23390740 -159024502 + MIR3 SINE MIR 95 204 -4 742 100 91 0 chr6 23391027 23391137 -159024105 + AluSp/q SINE Alu 176 295 -18 323 301 35 26 chr6 23391305 23391418 -159023824 - MIR SINE MIR -95 167 54 858 244 5 29 chr6 23392162 23392371 -159022871 - MER3 DNA MER1_type -5 204 1 22 0 0 0 chr6 23395762 23395784 -159019458 + AT_rich Low_complexity Low_complexity 1 22 0 187 235 153 35 chr6 23396701 23396786 -159018456 - L3 LINE CR1 -781 796 702 338 370 72 24 chr6 23396811 23397019 -159018223 + MIR SINE MIR 45 262 0 1119 304 66 57 chr6 23397024 23397603 -159017639 - L3 LINE CR1 -876 701 118 30 0 0 0 chr6 23397939 23397969 -159017273 + AT_rich Low_complexity Low_complexity 1 30 0 376 362 119 4 chr6 23397999 23398234 -159017008 - MIR SINE MIR 0 262 1 22 35 0 0 chr6 23398393 23398422 -159016820 + AT_rich Low_complexity Low_complexity 1 29 0 2233 120 7 0 chr6 23398713 23399022 -159016220 + AluSx SINE Alu 1 311 -1 862 180 0 14 chr6 23400094 23400233 -159015009 - L1PA8A LINE L1 -2 6129 5993 2389 53 43 16 chr6 23400243 23400546 -159014696 - AluY SINE Alu 0 311 1 2328 105 3 0 chr6 23400856 23401161 -159014081 - AluSx SINE Alu -6 306 1 1837 185 0 10 chr6 23401196 23401510 -159013732 - AluJb SINE Alu -1 311 1 2452 80 0 3 chr6 23401520 23401831 -159013411 - AluY SINE Alu -1 310 1 865 163 39 79 chr6 23401831 23402009 -159013233 - FAM SINE Alu -4 171 1 1158 223 37 25 chr6 23402091 23402414 -159012828 + L1M4 LINE L1 2715 3041 -3105 279 228 83 119 chr6 23402466 23402582 -159012660 + L1ME3 LINE L1 5960 6068 -94 1799 209 48 19 chr6 23402582 23402959 -159012283 + MLT1B LTR MaLR 3 390 0 279 228 83 119 chr6 23402959 23403035 -159012207 + L1ME3 LINE L1 6068 6145 -17 196 164 104 45 chr6 23403206 23403273 -159011969 + MIR SINE MIR 160 230 -32 225 239 57 11 chr6 23403914 23404002 -159011240 + CT-rich Low_complexity Low_complexity 4 95 0 2842 162 96 23 chr6 23405783 23406344 -159008898 - MER6A DNA MER2_type -2 603 2 21 36 0 0 chr6 23406539 23406567 -159008675 + AT_rich Low_complexity Low_complexity 1 28 0 1796 70 0 0 chr6 23406886 23407101 -159008141 - AluSg/x SINE Alu -13 297 83 733 291 36 55 chr6 23408032 23408285 -159006957 - MIR SINE MIR 0 262 16 2168 61 61 7 chr6 23409027 23409307 -159005935 + AluSq SINE Alu 1 295 -18 2462 66 0 10 chr6 23409903 23410208 -159005034 - AluY SINE Alu -9 302 1 275 294 0 24 chr6 23410368 23410453 -159004789 + MER103 DNA DNA 68 150 -16 2075 101 40 0 chr6 23410625 23410903 -159004339 - AluSq SINE Alu -24 289 1 2230 99 18 27 chr6 23410983 23411317 -159003925 + MER1B DNA MER1_type 1 331 -8 1838 107 0 0 chr6 23411492 23411736 -159003506 + AluSg SINE Alu 1 244 -66 1455 217 14 0 chr6 23412655 23412932 -159002310 - AluJo SINE Alu -31 281 1 704 264 126 29 chr6 23413467 23413706 -159001536 + MIR SINE MIR 1 262 0 208 271 17 0 chr6 23416344 23416403 -158998839 - L3 LINE CR1 -863 714 655 1897 171 7 0 chr6 23417636 23417941 -158997301 - AluJo SINE Alu -5 307 1 1462 199 211 28 chr6 23418012 23418439 -158996803 - MLT1D LTR MaLR 0 505 1 1805 156 10 26 chr6 23419440 23419742 -158995500 - AluJb SINE Alu -15 297 1 303 283 75 33 chr6 23420158 23420278 -158994964 - MIR SINE MIR -73 189 65 1381 143 0 23 chr6 23420750 23420967 -158994275 + AluJo SINE Alu 84 295 -17 207 314 0 0 chr6 23423539 23423590 -158991652 - L2 LINE L2 -21 3251 3201 570 270 97 42 chr6 23423616 23423853 -158991389 + MIR SINE MIR 3 252 -10 223 312 78 0 chr6 23423873 23423950 -158991292 - MIR SINE MIR -150 112 30 255 307 59 0 chr6 23424069 23424170 -158991072 + AluYb8 SINE Alu 194 300 -8 226 283 0 22 chr6 23425749 23425841 -158989401 + (CAGAGA)n Simple_repeat Simple_repeat 4 93 0 405 261 94 13 chr6 23426196 23426494 -158988748 - L1ME4a LINE L1 -5 6116 5755 1374 217 16 4 chr6 23427271 23427529 -158987713 + Tigger7 DNA MER2_type 7 267 -466 562 143 0 57 chr6 23427526 23427631 -158987611 + Tigger7 DNA MER2_type 2388 2486 -1 * 2087 133 17 0 chr6 23428083 23428385 -158986857 - AluSq SINE Alu -6 307 1 1839 169 3 10 chr6 23428385 23428692 -158986550 - AluJo SINE Alu -7 305 1 4826 118 16 42 chr6 23428840 23429612 -158985630 - L1PA16 LINE L1 0 6166 5415 1922 115 65 4 chr6 23430388 23430667 -158984575 + AluSx SINE Alu 1 296 -16 370 306 93 22 chr6 23430678 23430861 -158984381 - MIR SINE MIR -47 215 20 274 321 121 80 chr6 23430909 23431499 -158983743 - L2 LINE L2 0 3272 2665 228 100 0 0 chr6 23432671 23432711 -158982531 + (A)n Simple_repeat Simple_repeat 1 40 0 2418 87 3 10 chr6 23433267 23433579 -158981663 + AluSg SINE Alu 1 310 0 239 189 288 23 chr6 23433749 23433852 -158981390 + MIR SINE MIR 32 154 -65 21 36 0 0 chr6 23434069 23434097 -158981145 + AT_rich Low_complexity Low_complexity 1 28 0 192 200 43 0 chr6 23434410 23434480 -158980762 + CT-rich Low_complexity Low_complexity 3 75 0 7993 186 30 16 chr6 23434493 23437015 -158978227 - L1MB3 LINE L1 0 6183 3697 2057 132 30 0 chr6 23437015 23437311 -158977931 + AluSx SINE Alu 1 305 -7 7993 186 30 16 chr6 23437311 23437364 -158977878 - L1MB3 LINE L1 -2486 3697 3646 2262 119 0 10 chr6 23437364 23437675 -158977567 - AluSq SINE Alu -5 308 1 7993 186 30 16 chr6 23437675 23437699 -158977543 - L1MB3 LINE L1 -2537 3646 3547 333 110 41 14 chr6 23438170 23438243 -158976999 + CT-rich Low_complexity Low_complexity 4 78 0 1382 177 100 17 chr6 23438259 23438558 -158976684 - MER33 DNA MER1_type 0 324 1 351 0 0 0 chr6 23440112 23440151 -158975091 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 1116 164 30 73 chr6 23440407 23440639 -158974603 - AluJb SINE Alu -6 306 85 529 261 167 22 chr6 23440793 23441015 -158974227 + MIR SINE MIR 9 262 0 393 22 0 0 chr6 23441177 23441223 -158974019 + (TG)n Simple_repeat Simple_repeat 1 46 0 250 270 112 34 chr6 23442417 23442595 -158972647 + MIR SINE MIR 14 205 -57 2123 107 0 26 chr6 23443245 23443553 -158971689 - AluSg SINE Alu -10 300 1 221 299 118 10 chr6 23443942 23444059 -158971183 + MIR SINE MIR 32 162 -46 2236 112 0 0 chr6 23444330 23444626 -158970616 - AluSx SINE Alu -14 298 3 22 0 0 0 chr6 23445432 23445454 -158969788 + AT_rich Low_complexity Low_complexity 1 22 0 304 347 8 8 chr6 23446188 23446309 -158968933 + MIR SINE MIR 29 149 -113 2109 100 17 0 chr6 23446531 23446822 -158968420 - AluY SINE Alu -15 296 1 2329 117 11 30 chr6 23447600 23447968 -158967274 + THE1B LTR MaLR 1 361 -3 238 253 58 23 chr6 23447984 23448071 -158967171 - MIR SINE MIR -109 153 64 480 295 75 44 chr6 23448382 23448609 -158966633 - MIR SINE MIR 0 262 29 25 0 0 0 chr6 23449136 23449161 -158966081 + AT_rich Low_complexity Low_complexity 1 25 0 418 320 41 0 chr6 23449289 23449411 -158965831 - L2 LINE L2 -6 3307 3181 2341 105 0 9 chr6 23449919 23450234 -158965008 - AluSx SINE Alu 0 312 1 813 98 33 0 chr6 23450239 23450361 -158964881 - L1PA16 LINE L1 -13 6153 6028 351 0 0 0 chr6 23451161 23451200 -158964042 + (CA)n Simple_repeat Simple_repeat 2 40 0 2299 57 40 3 chr6 23452968 23453264 -158961978 - AluY SINE Alu -4 307 1 21 0 0 0 chr6 23453451 23453472 -158961770 + AT_rich Low_complexity Low_complexity 1 21 0 1509 133 44 4 chr6 23453678 23453903 -158961339 + AluJb SINE Alu 1 234 -78 243 0 0 0 chr6 23453905 23453932 -158961310 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 863 190 105 10 chr6 23454006 23454206 -158961036 - MER20 DNA MER1_type 0 219 1 370 307 62 17 chr6 23456108 23456304 -158958938 + MIR SINE MIR 16 218 -44 252 0 0 0 chr6 23457486 23457514 -158957728 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2208 121 0 0 chr6 23457930 23458235 -158957007 + AluSx SINE Alu 1 305 -7 1538 189 3 28 chr6 23459491 23459808 -158955434 + AluJb SINE Alu 1 309 -3 1801 89 0 0 chr6 23459963 23460187 -158955055 + AluSx SINE Alu 1 224 -88 388 276 96 47 chr6 23460663 23461007 -158954235 + L1ME LINE L1 5456 5816 -305 285 180 66 0 chr6 23461385 23461446 -158953796 - L2 LINE L2 0 3313 3249 2205 121 0 0 chr6 23461584 23461881 -158953361 + AluSq SINE Alu 1 297 -16 2235 203 58 37 chr6 23464092 23464712 -158950530 - L1MC3 LINE L1 -1 7784 7152 193 247 118 54 chr6 23464714 23464807 -158950435 + MIR SINE MIR 164 262 0 2166 116 30 0 chr6 23466011 23466314 -158948928 - AluSx SINE Alu 0 312 1 261 0 0 0 chr6 23466552 23466581 -158948661 + (TG)n Simple_repeat Simple_repeat 2 30 0 827 264 56 44 chr6 23466642 23467002 -158948240 + MLT1I LTR MaLR 46 409 0 366 80 0 0 chr6 23467294 23467344 -158947898 + (CA)n Simple_repeat Simple_repeat 2 51 0 200 200 0 25 chr6 23468277 23468317 -158946925 + CT-rich Low_complexity Low_complexity 2 40 0 670 269 114 14 chr6 23469981 23470342 -158944900 - HAL1 LINE L1 -1043 1464 1068 3943 91 6 0 chr6 23470343 23470884 -158944358 + L1PA10 LINE L1 5612 6155 -13 234 211 19 0 chr6 23471651 23471703 -158943539 + CT-rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr6 23471879 23471908 -158943334 + AT_rich Low_complexity Low_complexity 1 29 0 644 62 0 21 chr6 23472449 23472546 -158942696 + AluSx SINE Alu 216 310 -2 25 31 0 0 chr6 23472619 23472651 -158942591 + AT_rich Low_complexity Low_complexity 1 32 0 1461 179 39 14 chr6 23472664 23472943 -158942299 - AluJb SINE Alu -21 291 6 315 0 0 0 chr6 23473727 23473762 -158941480 + (TAA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr6 23474466 23474494 -158940748 + AT_rich Low_complexity Low_complexity 1 28 0 617 293 250 5 chr6 23474598 23475065 -158940177 - L2 LINE L2 -41 3272 2666 1208 196 4 13 chr6 23475065 23475290 -158939952 - MER58A DNA MER1_type 0 224 2 836 181 142 60 chr6 23475654 23475935 -158939307 - MER33 DNA MER1_type 0 324 21 2321 101 10 7 chr6 23476219 23476527 -158938715 - AluSx SINE Alu -3 309 1 1706 173 3 33 chr6 23476952 23477259 -158937983 - AluJb SINE Alu -12 300 3 1363 118 0 29 chr6 23477259 23477463 -158937779 + AluJb SINE Alu 113 310 -2 901 262 33 0 chr6 23478210 23478420 -158936822 - MIR SINE MIR -39 223 7 248 333 73 18 chr6 23480408 23480573 -158934669 + MIR SINE MIR 14 187 -75 451 220 89 3 chr6 23480630 23480757 -158934485 + L1ME2 LINE L1 3523 3659 -2487 1769 275 23 17 chr6 23480822 23481465 -158933777 + L1ME2 LINE L1 3797 4443 -1703 702 173 0 16 chr6 23481466 23481593 -158933649 + 7SK RNA RNA 1 125 -68 490 66 0 0 chr6 23481643 23481704 -158933538 + 7SK RNA RNA 133 193 0 2486 241 99 19 chr6 23481704 23482386 -158932856 + L1ME2 LINE L1 4431 5057 -1109 1900 149 10 10 chr6 23482386 23482688 -158932554 + AluJb SINE Alu 1 302 -10 2486 241 99 19 chr6 23482688 23483589 -158931653 + L1ME2 LINE L1 5057 6162 -4 303 293 24 42 chr6 23483599 23483811 -158931431 + L1MC4 LINE L1 7834 8041 -1 302 280 13 0 chr6 23484578 23484653 -158930589 - MIR3 SINE MIR -17 191 116 2912 227 69 39 chr6 23485349 23487304 -158927938 - L1ME1 LINE L1 -5 6555 4544 480 90 0 0 chr6 23487302 23487369 -158927873 + L1PA16 LINE L1 6061 6127 -39 * 296 248 83 8 chr6 23487367 23487488 -158927754 - L1ME1 LINE L1 -2248 4292 4163 * 1442 136 50 12 chr6 23487493 23487735 -158927507 - Tigger3(Golem) DNA MER2_type 0 3031 2781 233 200 0 0 chr6 23487732 23487772 -158927470 - Tigger3(Golem) DNA MER2_type -2887 142 103 * 757 183 0 16 chr6 23487772 23487898 -158927344 - Tigger3(Golem) DNA MER2_type -2905 124 1 375 333 64 4 chr6 23487906 23488155 -158927087 - L1ME1 LINE L1 -2383 4157 3894 28 29 0 0 chr6 23488160 23488195 -158927047 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 23488266 23488301 -158926941 + AT_rich Low_complexity Low_complexity 1 35 0 255 243 151 19 chr6 23488310 23488516 -158926726 - L1ME1 LINE L1 -2702 3838 3606 772 138 0 0 chr6 23488522 23488638 -158926604 - Tigger3(Golem) DNA MER2_type -96 2933 2818 291 174 228 0 chr6 23488579 23488671 -158926571 + Tigger3(Golem) DNA MER2_type 2828 2940 -89 * 1895 273 44 52 chr6 23488837 23489087 -158926155 - L1ME1 LINE L1 -4029 2511 2261 806 168 8 0 chr6 23489087 23489218 -158926024 + FLAM_C SINE Alu 1 132 -1 1895 273 44 52 chr6 23489218 23490068 -158925174 - L1ME1 LINE L1 -4279 2261 1406 2393 142 23 2 chr6 23490068 23490463 -158924779 + MER57A LTR ERV1 1 403 0 1895 273 44 52 chr6 23490463 23490519 -158924723 - L1ME1 LINE L1 -5134 1406 1361 1995 152 30 30 chr6 23490519 23490882 -158924360 - THE1B LTR MaLR -1 363 1 1895 273 44 52 chr6 23490882 23490901 -158924341 - L1ME1 LINE L1 -5179 1361 1343 1514 163 32 104 chr6 23490907 23491282 -158923960 + MER7A DNA MER2_type 1 346 0 295 275 36 84 chr6 23491561 23491728 -158923514 - L1ME1 LINE L1 -5522 1008 850 358 295 109 67 chr6 23491886 23492171 -158923071 - L1ME1 LINE L1 -6187 353 57 1433 131 65 128 chr6 23492272 23492593 -158922649 + AluJo SINE Alu 1 301 -11 1237 236 74 54 chr6 23493651 23494150 -158921092 - L1ME2 LINE L1 -1 6163 5655 386 337 53 24 chr6 23494498 23494667 -158920575 + L2 LINE L2 3098 3271 -1 189 0 0 0 chr6 23494955 23494976 -158920266 + (CA)n Simple_repeat Simple_repeat 2 22 0 529 286 108 25 chr6 23497608 23497849 -158917393 - L2 LINE L2 -17 3296 3036 1426 152 156 7 chr6 23497970 23498240 -158917002 - AluJb SINE Alu -2 310 1 22 35 0 0 chr6 23498255 23498284 -158916958 + AT_rich Low_complexity Low_complexity 1 29 0 2669 220 93 17 chr6 23498297 23499067 -158916175 - L1ME2 LINE L1 -137 6027 5146 2259 118 0 0 chr6 23499067 23499371 -158915871 - AluSx SINE Alu -8 304 1 2669 220 93 17 chr6 23499371 23499686 -158915556 - L1ME2 LINE L1 -1018 5146 4856 988 291 103 28 chr6 23499702 23500235 -158915007 + L1MCc LINE L1 26 598 -5825 531 259 61 0 chr6 23500460 23500607 -158914635 - MIR SINE MIR -105 157 2 345 352 58 46 chr6 23500607 23501001 -158914241 - L2 LINE L2 -1229 2085 1687 2323 109 7 0 chr6 23501003 23501306 -158913936 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr6 23502917 23502939 -158912303 + AT_rich Low_complexity Low_complexity 1 22 0 313 192 55 0 chr6 23503871 23503944 -158911298 - L1MC3 LINE L1 -1139 6646 6570 378 0 0 0 chr6 23503982 23504024 -158911218 + (CA)n Simple_repeat Simple_repeat 2 43 0 2030 114 48 0 chr6 23504033 23504322 -158910920 - AluSx SINE Alu -9 303 1 257 279 59 0 chr6 23505121 23505189 -158910053 + MIR SINE MIR 107 178 -84 22 0 0 0 chr6 23506436 23506458 -158908784 + AT_rich Low_complexity Low_complexity 1 22 0 194 264 69 28 chr6 23506606 23506678 -158908564 - MIR SINE MIR -70 192 118 198 0 0 0 chr6 23507266 23507288 -158907954 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 233 305 133 9 chr6 23509543 23509648 -158905594 + MIR SINE MIR 104 221 -41 1787 173 6 19 chr6 23509804 23510116 -158905126 - AluJb SINE Alu -4 308 1 299 316 0 0 chr6 23514601 23514680 -158900562 - L2 LINE L2 -5 3267 3189 213 39 0 0 chr6 23514990 23515016 -158900226 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 2539 126 70 108 chr6 23516132 23516311 -158898931 - LTR49 LTR ERV1 -7 588 404 1598 175 0 69 chr6 23516311 23516511 -158898731 - AluJo SINE Alu 0 312 100 1820 149 0 11 chr6 23516511 23516792 -158898450 + AluSx SINE Alu 1 278 -34 369 0 0 0 chr6 23516802 23516843 -158898399 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 67 0 0 chr6 23516842 23516872 -158898370 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1598 175 0 69 chr6 23516843 23516992 -158898250 - AluJo SINE Alu -221 91 4 2539 126 70 108 chr6 23516992 23517010 -158898232 - LTR49 LTR ERV1 -191 404 387 2664 29 7 0 chr6 23517010 23517319 -158897923 - AluY SINE Alu 0 311 1 2265 110 0 3 chr6 23517328 23517637 -158897605 - AluSg SINE Alu -2 308 1 2539 126 70 108 chr6 23517637 23518039 -158897203 - LTR49 LTR ERV1 -216 379 1 317 234 28 8 chr6 23518565 23518688 -158896554 + L1MC4 LINE L1 1996 6983 -1339 * 339 253 0 22 chr6 23518680 23518771 -158896471 + L1MC4 LINE L1 6895 6983 -1339 300 111 0 0 chr6 23518780 23518825 -158896417 + (TG)n Simple_repeat Simple_repeat 2 46 0 249 213 0 0 chr6 23519300 23519347 -158895895 - MIR SINE MIR -122 140 94 2227 97 0 35 chr6 23519559 23519869 -158895373 - AluSx SINE Alu -12 300 2 2213 109 0 0 chr6 23520118 23520422 -158894820 + AluSx SINE Alu 1 304 -8 1906 152 0 23 chr6 23520506 23520816 -158894426 - AluJb SINE Alu -3 309 7 7725 194 27 23 chr6 23522246 23524794 -158890448 - L1PA15 LINE L1 0 6165 3594 231 357 0 0 chr6 23524857 23524927 -158890315 - MIR SINE MIR -188 74 5 26 30 0 0 chr6 23525117 23525150 -158890092 + AT_rich Low_complexity Low_complexity 1 33 0 4512 169 53 4 chr6 23525150 23526304 -158888938 - L1PB4 LINE L1 -4 6152 4944 2098 119 80 14 chr6 23526715 23527067 -158888175 + THE1C LTR MaLR 1 375 0 646 90 0 0 chr6 23527470 23527559 -158887683 - AluSp/q SINE Alu -7 306 218 461 306 119 96 chr6 23527567 23529044 -158886198 + L2 LINE L2 1616 3127 -145 2385 202 87 14 chr6 23529044 23529608 -158885634 - MER77 LTR ERV1 0 605 1 461 306 119 96 chr6 23529608 23529758 -158885484 + L2 LINE L2 3127 3272 0 280 232 16 40 chr6 23530060 23530185 -158885057 + (CATAT)n Simple_repeat Simple_repeat 2 123 0 780 166 13 0 chr6 23530554 23530705 -158884537 + L1MC3 LINE L1 6961 7113 -672 285 277 36 0 chr6 23530708 23530791 -158884451 + MLT1F1 LTR MaLR 54 139 -428 2780 132 83 17 chr6 23530796 23531325 -158883917 + L1MC3 LINE L1 7202 7765 -20 469 294 81 30 chr6 23532478 23532675 -158882567 + MIR SINE MIR 20 226 -36 594 272 157 7 chr6 23532795 23532998 -158882244 + MIR SINE MIR 3 235 -27 255 286 109 41 chr6 23533163 23533310 -158881932 - MARNA DNA Mariner -83 503 347 271 340 7 100 chr6 23535436 23535586 -158879656 - MIR3 SINE MIR -63 145 10 1795 131 13 61 chr6 23535786 23536098 -158879144 - AluJb SINE Alu -15 297 1 600 366 83 18 chr6 23536250 23536646 -158878596 + L3 LINE CR1 931 1352 -225 520 117 0 0 chr6 23536689 23536766 -158878476 - Alu SINE Alu -2 310 234 2562 44 0 0 chr6 23636766 23637059 -158778183 - AluY SINE Alu -18 293 1 2126 160 46 60 chr6 23637059 23637539 -158777703 - L1M4 LINE L1 -935 5211 4739 1341 96 0 0 chr6 23637539 23637705 -158777537 - AluSp SINE Alu -15 298 133 1427 179 26 23 chr6 23637708 23638016 -158777226 - L1M4 LINE L1 -1401 4745 4437 189 107 0 0 chr6 23638188 23638216 -158777026 + (T)n Simple_repeat Simple_repeat 1 28 0 669 229 127 0 chr6 23638239 23638396 -158776846 + MER5B DNA MER1_type 2 178 0 517 240 99 5 chr6 23639509 23639701 -158775541 - L1ME4a LINE L1 -56 6065 5856 905 280 52 50 chr6 23639806 23640165 -158775077 + L1ME4a LINE L1 5603 5965 -156 1274 209 0 4 chr6 23640165 23640390 -158774852 - MER58A DNA MER1_type 0 224 1 905 280 52 50 chr6 23640390 23640530 -158774712 + L1ME4a LINE L1 5965 6103 -18 275 227 0 11 chr6 23640692 23640780 -158774462 + GA-rich Low_complexity Low_complexity 2 88 0 1972 130 13 3 chr6 23641140 23641439 -158773803 - AluSx SINE Alu -9 303 2 415 224 53 33 chr6 23641881 23642033 -158773209 - MER103 DNA DNA -1 165 11 2210 118 3 0 chr6 23642142 23642446 -158772796 + AluSx SINE Alu 1 305 -7 180 0 0 0 chr6 23642607 23642627 -158772615 + (T)n Simple_repeat Simple_repeat 1 20 0 1860 177 0 0 chr6 23643275 23643569 -158771673 + AluJo SINE Alu 2 295 -17 688 208 164 17 chr6 23643780 23644011 -158771231 - L1ME4a LINE L1 -1 6120 5856 184 42 0 0 chr6 23644042 23644066 -158771176 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1688 148 3 66 chr6 23644066 23644370 -158770872 - AluJb SINE Alu -27 285 1 828 187 0 0 chr6 23644694 23644828 -158770414 - AluJo SINE Alu -37 275 142 1436 258 92 57 chr6 23645717 23646403 -158768839 + HsTC2a DNA Tc2 4 713 -31 477 243 77 12 chr6 23646700 23646869 -158768373 + MER104 DNA Tc2 1 180 0 304 358 44 0 chr6 23646993 23647130 -158768112 - L1ME4a LINE L1 -2211 5597 5455 2160 122 3 0 chr6 23647688 23647999 -158767243 - AluSq SINE Alu -1 312 1 237 247 0 17 chr6 23648000 23648059 -158767183 + MIR3 SINE MIR 99 157 -51 479 285 73 19 chr6 23648402 23648578 -158766664 + MIR SINE MIR 7 188 -66 40 49 0 0 chr6 23651728 23651789 -158763453 + AT_rich Low_complexity Low_complexity 1 61 0 26 50 0 0 chr6 23651948 23651988 -158763254 + AT_rich Low_complexity Low_complexity 1 40 0 184 425 78 26 chr6 23652312 23652465 -158762777 + L2 LINE L2 3108 3268 -4 2745 134 125 15 chr6 23653273 23653818 -158761424 - L1MB3 LINE L1 -7 6176 5572 2195 86 0 17 chr6 23654673 23654964 -158760278 + AluSg SINE Alu 1 286 -24 23 0 0 0 chr6 23655191 23655214 -158760028 + AT_rich Low_complexity Low_complexity 1 23 0 753 164 0 15 chr6 23655468 23655602 -158759640 - AluJo SINE Alu -170 132 1 340 183 0 87 chr6 23655871 23655975 -158759267 + MIR SINE MIR 99 192 -62 21 57 0 0 chr6 23657460 23657495 -158757747 + AT_rich Low_complexity Low_complexity 1 35 0 257 275 30 131 chr6 23657960 23658129 -158757113 - MIR SINE MIR -65 143 20 * 314 346 96 60 chr6 23658118 23658450 -158756792 + L2 LINE L2 2929 3272 0 948 207 50 18 chr6 23660708 23660930 -158754312 + MIR SINE MIR 8 236 -26 2275 91 3 10 chr6 23661025 23661321 -158753921 + AluSg SINE Alu 1 294 -16 183 80 0 0 chr6 23661495 23661520 -158753722 + (T)n Simple_repeat Simple_repeat 1 25 0 441 0 0 0 chr6 23662191 23662240 -158753002 + (A)n Simple_repeat Simple_repeat 1 49 0 739 186 168 0 chr6 23662820 23662987 -158752255 + MER46A DNA MER2_type 1 195 -41 1632 76 5 0 chr6 23663251 23663461 -158751781 + AluY SINE Alu 1 211 -100 338 149 0 0 chr6 23663461 23663522 -158751720 + FAM SINE Alu 125 179 0 * 1307 213 45 14 chr6 23663511 23663798 -158751444 - Charlie1b DNA MER1_type -227 296 1 198 0 0 0 chr6 23664415 23664437 -158750805 + (CA)n Simple_repeat Simple_repeat 2 23 0 314 73 0 18 chr6 23664437 23664492 -158750750 + (GA)n Simple_repeat Simple_repeat 1 54 0 1094 145 0 0 chr6 23665084 23665243 -158749999 + AluJo SINE Alu 137 295 -17 569 271 117 11 chr6 23665243 23665509 -158749733 - L1ME LINE L1 -310 5811 5518 181 270 79 48 chr6 23666020 23666083 -158749159 + L2 LINE L2 3156 3220 -52 342 272 96 15 chr6 23666192 23666328 -158748914 + MIR SINE MIR 116 262 0 691 36 0 0 chr6 23666379 23666463 -158748779 - L1PA10 LINE L1 -10 6158 6075 2493 88 0 0 chr6 23666704 23667010 -158748232 - AluSq SINE Alu -7 306 1 1409 232 27 7 chr6 23667267 23667560 -158747682 - AluJo SINE Alu -13 299 1 680 232 111 5 chr6 23667740 23667938 -158747304 + MER20 DNA MER1_type 1 219 0 423 243 83 24 chr6 23668102 23668271 -158746971 + MIR SINE MIR 84 262 0 369 320 10 0 chr6 23668283 23668380 -158746862 + L3 LINE CR1 1368 1465 -112 209 289 13 13 chr6 23668787 23668863 -158746379 - MIR SINE MIR -4 258 183 21 0 0 0 chr6 23669415 23669436 -158745806 + AT_rich Low_complexity Low_complexity 1 21 0 4380 116 9 42 chr6 23669441 23670116 -158745126 - HSMAR1 DNA Mariner -228 1059 407 342 106 0 0 chr6 23670218 23670265 -158744977 - Alu SINE Alu -256 47 1 495 235 59 0 chr6 23671079 23671215 -158744027 - MIR SINE MIR -71 191 48 23 0 0 0 chr6 23672069 23672092 -158743150 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 23673798 23673820 -158741422 + AT_rich Low_complexity Low_complexity 1 22 0 2090 101 42 0 chr6 23677258 23677544 -158737698 - AluSg SINE Alu -10 300 3 383 61 0 0 chr6 23678519 23678568 -158736674 - Alu SINE Alu -10 292 244 1461 156 38 0 chr6 23678570 23678833 -158736409 + L1 LINE L1 3707 3979 -2167 8390 128 26 20 chr6 23679006 23680468 -158734774 - L1M1 LINE L1 -4345 3220 1751 7124 15 39 0 chr6 23680475 23681323 -158733919 - L1PA2 LINE L1 0 6155 5275 430 61 0 45 chr6 23681307 23681373 -158733869 + L1P LINE L1 3001 3063 -3083 * 555 89 22 0 chr6 23683402 23683492 -158731750 - AluJb SINE Alu -19 293 202 201 323 177 10 chr6 23685240 23685336 -158729906 + L2 LINE L2 3155 3266 -6 1880 133 43 0 chr6 23686001 23686280 -158728962 - AluSx SINE Alu -21 291 1 428 242 38 8 chr6 23687542 23687674 -158727568 + MER103 DNA DNA 12 147 -19 24 0 0 0 chr6 23687829 23687853 -158727389 + AT_rich Low_complexity Low_complexity 1 24 0 318 231 46 46 chr6 23688506 23688614 -158726628 - L1ME4a LINE L1 -6 6115 6008 24 32 0 0 chr6 23688680 23688711 -158726531 + AT_rich Low_complexity Low_complexity 1 31 0 1340 203 72 0 chr6 23688722 23689013 -158726229 + MER58B DNA MER1_type 30 341 0 591 266 23 0 chr6 23689116 23689289 -158725953 - L1ME4a LINE L1 -423 5698 5522 27 0 0 0 chr6 23689868 23689895 -158725347 + AT_rich Low_complexity Low_complexity 1 27 0 253 279 78 34 chr6 23690365 23690544 -158724698 + L2 LINE L2 3127 3313 0 265 371 91 11 chr6 23691258 23691444 -158723798 - L3b LINE CR1 -89 1494 1294 21 36 0 0 chr6 23691707 23691735 -158723507 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr6 23692456 23692498 -158722744 + AT_rich Low_complexity Low_complexity 1 42 0 9141 172 31 23 chr6 23693526 23695939 -158719303 + L1MA9 LINE L1 3412 5839 -473 2170 110 13 7 chr6 23696220 23696530 -158718712 - AluSx SINE Alu 0 312 1 327 280 217 37 chr6 23696531 23696720 -158718522 - MLT1J2 LTR MaLR -121 329 107 195 283 0 0 chr6 23696779 23696832 -158718410 + MIR SINE MIR 210 262 0 849 201 0 155 chr6 23697444 23697708 -158717534 - MER58A DNA MER1_type 0 224 2 494 304 130 42 chr6 23699280 23699665 -158715577 - L2 LINE L2 -915 2399 1981 237 83 0 0 chr6 23700008 23700044 -158715198 + (TG)n Simple_repeat Simple_repeat 1 36 0 226 281 37 0 chr6 23700160 23700242 -158715000 + L3b LINE CR1 1241 1325 -258 236 276 0 40 chr6 23700593 23700669 -158714573 + L2 LINE L2 3239 3311 -2 208 188 47 16 chr6 23700850 23700914 -158714328 + (TA)n Simple_repeat Simple_repeat 1 66 0 376 380 127 8 chr6 23701143 23701388 -158713854 - L3 LINE CR1 -354 1223 950 192 40 0 0 chr6 23701536 23701561 -158713681 + (GA)n Simple_repeat Simple_repeat 2 26 0 416 303 56 28 chr6 23701608 23701786 -158713456 - L3b LINE CR1 -277 1306 1124 328 385 127 8 chr6 23701996 23702240 -158713002 - L3 LINE CR1 -354 1223 951 190 301 72 12 chr6 23702286 23702369 -158712873 - L3 LINE CR1 -746 831 744 1417 268 116 18 chr6 23702704 23703256 -158711986 + L2 LINE L2 2255 2860 -454 2283 57 4 0 chr6 23703429 23703709 -158711533 + AluY SINE Alu 1 281 -30 414 0 0 0 chr6 23703710 23703756 -158711486 + (CA)n Simple_repeat Simple_repeat 1 46 0 337 297 36 18 chr6 23703933 23704044 -158711198 - MIR3 SINE MIR -3 205 93 2418 74 0 6 chr6 23704131 23704443 -158710799 + AluY SINE Alu 1 310 -1 7628 113 21 19 chr6 23704597 23707265 -158707977 - L1P3 LINE L1 -1996 4465 765 1806 222 69 21 chr6 23707266 23708276 -158706966 - L1ME LINE L1 -353 5880 4806 1900 172 47 40 chr6 23708276 23708701 -158706541 + MSTC LTR MaLR 1 428 0 1806 222 69 21 chr6 23708701 23708738 -158706504 - L1ME LINE L1 -1427 4806 4772 1200 233 116 71 chr6 23708862 23709392 -158705850 - L1ME LINE L1 -2241 3974 3469 2848 7 0 0 chr6 23709392 23709698 -158705544 + AluYb8 SINE Alu 1 306 -12 1200 233 116 71 chr6 23709698 23710187 -158705055 - L1ME LINE L1 -2746 3469 2909 955 254 48 17 chr6 23710376 23710794 -158704448 - L1ME LINE L1 -3328 2887 2457 518 281 80 34 chr6 23710796 23711184 -158704058 - L1ME LINE L1 -4887 1509 1104 1792 305 157 12 chr6 23711321 23712006 -158703236 + L2 LINE L2 1530 2114 -1200 1182 229 108 40 chr6 23712006 23712377 -158702865 + MSTD LTR MaLR 1 396 0 1792 305 157 12 chr6 23712377 23712775 -158702467 + L2 LINE L2 2114 2770 -544 1993 92 37 3 chr6 23712917 23713211 -158702031 - L1PA13 LINE L1 -1 6162 5859 211 315 62 27 chr6 23713738 23713884 -158701358 + L2 LINE L2 1436 1586 -1728 199 315 41 0 chr6 23713895 23713968 -158701274 + L2 LINE L2 2268 2343 -971 2494 38 0 3 chr6 23714311 23714604 -158700638 - AluY SINE Alu -19 292 1 263 259 116 60 chr6 23715070 23715286 -158699956 + HAL1b LINE L1 373 600 -748 22 0 0 0 chr6 23715404 23715426 -158699816 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 23715622 23715643 -158699599 + AT_rich Low_complexity Low_complexity 1 21 0 2798 173 61 22 chr6 23715807 23716444 -158698798 + LTR65 LTR ERV1 8 669 0 1417 183 76 59 chr6 23716451 23716544 -158698698 + Charlie2 DNA MER1_type 2166 2256 -606 2343 103 3 0 chr6 23716544 23716844 -158698398 + AluSq SINE Alu 1 301 -12 1417 183 76 59 chr6 23716844 23717049 -158698193 + Charlie2 DNA MER1_type 2256 2456 -406 2177 144 0 0 chr6 23717049 23717361 -158697881 - AluSx SINE Alu 0 312 1 1417 183 76 59 chr6 23717361 23717603 -158697639 + Charlie2 DNA MER1_type 2456 2716 -146 1944 123 0 24 chr6 23717604 23717896 -158697346 + AluSx SINE Alu 1 285 -27 226 226 86 21 chr6 23717910 23718003 -158697239 + Charlie2 DNA MER1_type 2701 2799 -63 337 305 23 23 chr6 23718383 23718511 -158696731 - MER5A DNA MER1_type 0 189 62 1924 144 0 0 chr6 23718683 23718954 -158696288 + AluSx SINE Alu 1 271 -41 444 266 4 17 chr6 23719904 23720450 -158694792 + (CA)n Simple_repeat Simple_repeat 1 538 0 192 285 0 0 chr6 23720517 23720668 -158694574 + (CA)n Simple_repeat Simple_repeat 2 152 0 532 232 69 45 chr6 23720730 23720966 -158694276 + L1ME1 LINE L1 5923 6160 -6 318 296 45 0 chr6 23721578 23721666 -158693576 - L2 LINE L2 -1 3312 3221 2197 75 32 4 chr6 23721666 23721944 -158693298 + AluSq SINE Alu 1 286 -27 783 233 4 14 chr6 23721973 23722182 -158693060 + L1ME1 LINE L1 5970 6178 0 289 319 30 30 chr6 23722951 23723117 -158692125 + MIR SINE MIR 23 188 -74 2632 55 11 0 chr6 23724506 23724869 -158690373 + L1P LINE L1 4804 5170 -976 503 113 0 0 chr6 23725106 23725186 -158690056 - L1P LINE L1 -1263 4883 4804 236 138 224 0 chr6 23725335 23725393 -158689849 + LTR37B LTR ERV1 198 268 -200 2272 100 0 0 chr6 23725560 23725851 -158689391 + AluSc SINE Alu 5 295 -14 23 78 0 0 chr6 23726172 23726223 -158689019 + AT_rich Low_complexity Low_complexity 1 51 0 858 186 93 0 chr6 23726372 23726544 -158688698 + MER5A DNA MER1_type 1 188 -1 2271 113 6 3 chr6 23726611 23726922 -158688320 + AluSq SINE Alu 1 312 -1 2094 124 0 0 chr6 23726983 23727281 -158687961 - AluJb SINE Alu -14 298 1 573 199 80 94 chr6 23727498 23727699 -158687543 + L1ME1 LINE L1 5940 6137 -29 677 147 88 7 chr6 23727721 23727857 -158687385 + L1MB2 LINE L1 6018 6164 -7 1437 222 162 9 chr6 23728042 23728506 -158686736 - MER90 LTR ERV1 0 614 80 640 177 35 7 chr6 23728508 23728649 -158686593 + L1ME1 LINE L1 5723 5867 -299 2201 174 54 54 chr6 23728651 23729221 -158686021 + L1MC4a LINE L1 7238 7807 -1 1739 138 51 4 chr6 23729245 23729521 -158685721 + AluJb SINE Alu 1 289 -23 327 203 0 0 chr6 23729540 23729619 -158685623 + GA-rich Low_complexity Low_complexity 1 79 0 721 208 87 8 chr6 23729619 23729873 -158685369 + L1ME1 LINE L1 5859 6142 -22 304 240 0 21 chr6 23730459 23730555 -158684687 - L1MC5 LINE L1 -32 7929 7836 8571 129 29 71 chr6 23731608 23731684 -158683558 + L1MA7 LINE L1 3512 3590 -2701 2095 68 11 0 chr6 23731684 23731950 -158683292 - AluY SINE Alu -4 307 39 8571 129 29 71 chr6 23731950 23734779 -158680463 + L1MA7 LINE L1 3590 6289 -2 26 0 0 0 chr6 23734779 23734805 -158680437 + AT_rich Low_complexity Low_complexity 1 26 0 314 286 99 77 chr6 23735070 23735433 -158679809 + L1M4c LINE L1 896 1266 -5583 3286 253 108 15 chr6 23736660 23737961 -158677281 + L1M4c LINE L1 1522 2943 -3907 1138 134 0 120 chr6 23737961 23738177 -158677065 + AluJb SINE Alu 85 274 -38 323 171 29 0 chr6 23738178 23738248 -158676994 + GA-rich Low_complexity Low_complexity 4 75 0 2019 198 150 19 chr6 23738360 23739666 -158675576 - L1MCb LINE L1 -4460 2104 517 578 277 162 9 chr6 23739674 23740093 -158675149 - L1MCb LINE L1 -5942 622 140 * 3210 183 75 38 chr6 23740084 23741067 -158674175 - L1MB7 LINE L1 0 6184 5238 2384 82 3 13 chr6 23741067 23741373 -158673869 - AluY SINE Alu -8 303 1 3210 183 75 38 chr6 23741373 23741582 -158673660 - L1MB7 LINE L1 -946 5238 4955 1852 178 0 10 chr6 23741582 23741880 -158673362 - AluSx SINE Alu -17 295 1 3210 183 75 38 chr6 23741880 23741990 -158673252 - L1MB7 LINE L1 -1229 4955 4850 886 144 0 8 chr6 23741996 23742128 -158673114 + AluJb SINE Alu 3 133 -179 21 0 0 0 chr6 23743019 23743040 -158672202 + AT_rich Low_complexity Low_complexity 1 21 0 1967 143 16 7 chr6 23743124 23743431 -158671811 - AluSx SINE Alu -2 310 1 465 227 153 26 chr6 23743512 23743741 -158671501 + MIR SINE MIR 4 261 -1 672 226 113 15 chr6 23743819 23744023 -158671219 + MER58A DNA MER1_type 1 224 0 24 85 0 0 chr6 23744587 23744646 -158670596 + AT_rich Low_complexity Low_complexity 1 59 0 1253 218 225 16 chr6 23745072 23745761 -158669481 - L1MB7 LINE L1 -2289 3857 3025 1349 143 30 158 chr6 23745788 23746181 -158669061 - Tigger3(Golem) DNA MER2_type -6 3023 1 1171 157 106 75 chr6 23746882 23747175 -158668067 - AluJb SINE Alu 0 302 1 2757 244 41 22 chr6 23747532 23748771 -158666471 - L1ME2 LINE L1 -11 6153 4767 344 283 28 44 chr6 23750076 23750256 -158664986 - MIR SINE MIR -13 249 73 801 262 128 33 chr6 23751521 23751888 -158663354 - MLT1K LTR MaLR -8 580 179 236 278 0 67 chr6 23752359 23752449 -158662793 + MLT1K LTR MaLR 9 92 -496 21 0 0 0 chr6 23752735 23752756 -158662486 + AT_rich Low_complexity Low_complexity 1 21 0 189 319 0 0 chr6 23753664 23753711 -158661531 + L2 LINE L2 3229 3275 -38 789 252 66 84 chr6 23754251 23754891 -158660351 - L2 LINE L2 -2 3311 2686 2442 65 0 19 chr6 23754891 23755201 -158660041 + AluY SINE Alu 1 304 -7 789 252 66 84 chr6 23755201 23755299 -158659943 - L2 LINE L2 -627 2686 2588 580 263 67 30 chr6 23755332 23755602 -158659640 - HsTC2 DNA Tc2 -6 1892 1613 1203 149 0 10 chr6 23755632 23755827 -158659415 - AluJb SINE Alu -36 276 84 251 241 35 11 chr6 23755879 23755966 -158659276 - HsTC2 DNA Tc2 -546 1352 1264 450 206 72 0 chr6 23756048 23756145 -158659097 - HsTC2 DNA Tc2 -1752 146 43 2148 124 0 3 chr6 23756798 23757104 -158658138 - AluSx SINE Alu -7 305 1 1801 198 72 2 chr6 23758914 23759566 -158655676 - L1M4 LINE L1 -457 5727 5034 719 271 143 55 chr6 23759707 23760161 -158655081 - L2 LINE L2 -3 3310 2817 610 207 37 43 chr6 23761384 23761548 -158653694 + MER5B DNA MER1_type 1 163 -15 736 218 31 52 chr6 23761571 23761764 -158653478 + MER5A DNA MER1_type 1 189 0 473 232 70 28 chr6 23762587 23762729 -158652513 + MIR SINE MIR 11 158 -104 1320 196 14 20 chr6 23762836 23763132 -158652110 - AluSq SINE Alu -9 304 11 2120 133 3 7 chr6 23763152 23763454 -158651788 - AluSx SINE Alu -11 301 1 2452 62 23 0 chr6 23763477 23763781 -158651461 - AluSq SINE Alu -2 311 1 476 84 14 0 chr6 23763797 23763868 -158651374 + MSTD LTR MaLR 325 396 0 656 297 89 17 chr6 23764659 23764895 -158650347 - MIR SINE MIR 0 262 10 3151 211 48 26 chr6 23865193 23866120 -158549122 - L1M2c LINE L1 -4458 2331 1385 305 310 89 13 chr6 23866525 23866683 -158548559 + MIR SINE MIR 79 248 -14 2172 199 69 2 chr6 23866787 23867223 -158548019 - MER70A LTR ERVL -5 467 3 542 243 117 24 chr6 23867338 23867544 -158547698 - MIR SINE MIR -1 261 37 422 222 72 52 chr6 23868244 23868388 -158546854 - MER112 DNA MER1_type -31 229 80 2987 215 23 8 chr6 23868388 23869031 -158546211 + MER82 DNA MER2_type 1 653 0 224 244 37 85 chr6 23869474 23869556 -158545686 + MIR SINE MIR 50 127 -81 218 213 38 12 chr6 23869661 23869741 -158545501 + (TA)n Simple_repeat Simple_repeat 2 83 0 882 217 0 0 chr6 23871550 23871711 -158543531 + FRAM SINE Alu 4 164 -2 1333 231 71 47 chr6 23872098 23872549 -158542693 - MLT1C LTR MaLR 0 467 6 1370 242 104 23 chr6 23872762 23873727 -158541515 + L1MC4 LINE L1 6472 7666 -376 1330 13 0 0 chr6 23873895 23874046 -158541196 + L1PA5 LINE L1 5993 6143 -11 30 27 0 0 chr6 23874046 23874083 -158541159 + AT_rich Low_complexity Low_complexity 1 37 0 1852 168 14 0 chr6 23875275 23875560 -158539682 + AluJb SINE Alu 9 297 -15 845 244 24 0 chr6 23876147 23876356 -158538886 + MER58A DNA MER1_type 4 217 -7 2243 104 0 17 chr6 23876886 23877183 -158538059 + AluSx SINE Alu 11 302 -10 1134 243 19 26 chr6 23878398 23878707 -158536535 - MER21B LTR ERV1 -460 403 97 375 228 0 13 chr6 23878759 23878838 -158536404 - MER21B LTR ERV1 -774 89 12 2117 176 61 117 chr6 23879257 23879992 -158535250 - LTR8A LTR ERV1 0 727 34 1082 226 51 72 chr6 23880005 23880475 -158534767 + MER39 LTR ERV1 248 707 0 2202 113 7 0 chr6 23881342 23881635 -158533607 - AluSc SINE Alu -14 295 1 183 246 148 0 chr6 23882716 23882777 -158532465 - L2 LINE L2 -15 3257 3188 204 244 0 93 chr6 23883272 23883358 -158531884 + MIR SINE MIR 114 191 -71 2108 107 61 35 chr6 23883420 23883735 -158531507 + MLT1B LTR MaLR 6 334 -56 2377 111 0 20 chr6 23883735 23884076 -158531166 + MER1B DNA MER1_type 1 334 -3 2108 107 61 35 chr6 23884076 23884135 -158531107 + MLT1B LTR MaLR 334 390 0 234 245 281 22 chr6 23884515 23884654 -158530588 - MIR SINE MIR -76 186 12 200 318 82 45 chr6 23885397 23885507 -158529735 + L2 LINE L2 2999 3112 -160 575 257 72 0 chr6 23886500 23886722 -158528520 + L1MB7 LINE L1 5947 6184 0 1036 196 107 66 chr6 23887325 23887672 -158527570 + MLT1A2 LTR MaLR 1 361 -13 2176 143 24 14 chr6 23888155 23888526 -158526716 - THE1C LTR MaLR 0 375 1 370 278 63 8 chr6 23888735 23888861 -158526381 + MER94 DNA DNA 2 134 0 553 321 101 36 chr6 23889322 23889918 -158525324 + L1MEd LINE L1 700 1386 -4846 437 383 17 48 chr6 23889912 23890267 -158524975 + L1MEc LINE L1 223 566 -6021 * 2271 112 7 0 chr6 23890678 23890981 -158524261 + AluSx SINE Alu 1 305 -7 251 280 42 14 chr6 23891052 23891263 -158523979 + L1MEc LINE L1 1118 1335 -5071 383 263 75 56 chr6 23891339 23891658 -158523584 + L1MEc LINE L1 1541 1865 -4722 360 226 91 19 chr6 23891755 23891963 -158523279 + L1MEc LINE L1 2317 2539 -4048 1336 202 67 27 chr6 23892546 23892877 -158522365 - MER2 DNA MER2_type 0 344 1 1296 189 49 65 chr6 23894509 23894816 -158520426 - AluJo SINE Alu -10 302 1 6672 128 47 18 chr6 23895568 23896763 -158518479 + Tigger3b DNA MER2_type 3 1231 0 227 312 0 64 chr6 23896815 23896940 -158518302 - MLT1I LTR MaLR -195 214 98 227 213 96 43 chr6 23896909 23897003 -158518239 - MLT1H LTR MaLR -389 160 62 463 293 57 0 chr6 23897315 23897472 -158517770 - MIR SINE MIR -13 249 84 578 314 90 42 chr6 23897539 23897873 -158517369 - L3 LINE CR1 -100 1477 1128 1515 280 55 25 chr6 23899043 23899230 -158516012 + MLT1D LTR MaLR 1 181 -324 234 0 0 0 chr6 23899230 23899256 -158515986 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 1515 280 55 25 chr6 23899256 23899670 -158515572 + MLT1D LTR MaLR 181 505 0 1312 173 101 36 chr6 23901481 23901759 -158513483 - AluJb SINE Alu -6 296 1 317 267 30 0 chr6 23902606 23902707 -158512535 - MER5A DNA MER1_type -76 113 10 22 56 0 0 chr6 23903183 23903219 -158512023 + AT_rich Low_complexity Low_complexity 1 36 0 403 281 41 20 chr6 23905164 23905310 -158509932 + L2 LINE L2 537 685 -2629 304 292 87 34 chr6 23905367 23905550 -158509692 + MLT1I LTR MaLR 99 314 -132 3677 300 108 7 chr6 23905668 23907110 -158508132 + L2 LINE L2 691 2277 -1037 2231 116 21 37 chr6 23907424 23907805 -158507437 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr6 23908009 23908034 -158507208 + AT_rich Low_complexity Low_complexity 1 25 0 2433 22 0 4 chr6 23908085 23908362 -158506880 + AluYa5 SINE Alu 36 311 0 272 319 175 19 chr6 23908489 23908649 -158506593 + MIR3 SINE MIR 11 195 -13 422 206 103 59 chr6 23909502 23909706 -158505536 + MLT1K LTR MaLR 357 569 -19 1459 220 117 93 chr6 23910048 23910756 -158504486 - MER50 LTR ERV1 0 734 10 1011 305 81 37 chr6 23911125 23911521 -158503721 - HERV16 LTR ERVL -4279 717 283 800 222 16 11 chr6 23911521 23911706 -158503536 + MER5A DNA MER1_type 2 187 -2 1011 305 81 37 chr6 23911706 23911928 -158503314 - HERV16 LTR ERVL -4713 283 72 286 236 0 0 chr6 23911929 23911984 -158503258 + MLT1K LTR MaLR 534 588 0 1375 261 59 39 chr6 23912807 23913248 -158501994 - LTR16A1 LTR ERVL -2 455 6 486 240 64 0 chr6 23913295 23913420 -158501822 - MIR SINE MIR -9 253 121 1793 193 56 13 chr6 23913864 23914238 -158501004 + MLT1B LTR MaLR 1 390 0 2041 161 23 40 chr6 23914355 23914423 -158500819 - MLT1B LTR MaLR 0 390 322 2377 95 0 0 chr6 23914423 23914729 -158500513 - AluSc SINE Alu -3 306 1 2041 161 23 40 chr6 23914729 23915057 -158500185 - MLT1B LTR MaLR -68 322 1 981 240 128 58 chr6 23915448 23915910 -158499332 + LTR33A LTR ERVL 1 494 -29 239 306 0 14 chr6 23916536 23916608 -158498634 + MER5B DNA MER1_type 106 176 -2 1867 150 42 36 chr6 23916747 23917107 -158498135 + THE1B LTR MaLR 1 362 -2 2800 115 49 0 chr6 23917338 23917746 -158497496 + MSTC LTR MaLR 1 428 0 465 317 75 22 chr6 23919187 23919414 -158495828 + MIR SINE MIR 1 239 -23 394 322 106 21 chr6 23920111 23920347 -158494895 + MIR SINE MIR 1 256 -6 227 253 173 0 chr6 23921145 23921220 -158494022 - MIR3 SINE MIR 0 208 121 314 350 142 9 chr6 23921391 23921617 -158493625 + MIR SINE MIR 3 258 -4 9513 200 46 4 chr6 23921639 23923903 -158491339 + L1PBa LINE L1 2660 5012 -1850 555 298 19 6 chr6 23924504 23924665 -158490577 - MIR SINE MIR -98 164 2 255 400 62 0 chr6 23924778 23924908 -158490334 + L2 LINE L2 3134 3271 -1 406 260 142 81 chr6 23925748 23925950 -158489292 + MLT1I LTR MaLR 142 363 -46 2496 81 0 0 chr6 23925950 23926258 -158488984 - AluSg SINE Alu -2 308 1 406 260 142 81 chr6 23926258 23926301 -158488941 + MLT1I LTR MaLR 363 402 -7 210 291 38 25 chr6 23926723 23926802 -158488440 + L2 LINE L2 3234 3313 0 28 79 0 0 chr6 23927163 23927226 -158488016 + AT_rich Low_complexity Low_complexity 1 63 0 191 214 0 0 chr6 23927288 23927330 -158487912 + L3b LINE CR1 1363 1404 -179 331 216 284 0 chr6 23927831 23927919 -158487323 - L2 LINE L2 -1 3312 3200 237 431 57 8 chr6 23927972 23928095 -158487147 + L2 LINE L2 3112 3240 -32 195 333 58 0 chr6 23928372 23928459 -158486783 + MIR SINE MIR 40 131 -77 513 286 12 12 chr6 23929155 23929316 -158485926 - MIR SINE MIR 0 262 102 27 81 0 0 chr6 23929385 23929447 -158485795 + AT_rich Low_complexity Low_complexity 1 62 0 325 248 114 9 chr6 23931637 23931742 -158483500 + MIR3 SINE MIR 86 201 -7 265 323 46 39 chr6 23932429 23932559 -158482683 + L2 LINE L2 3136 3266 -6 2273 66 0 21 chr6 23932929 23933247 -158481995 - AluY SINE Alu 0 312 1 1306 158 4 0 chr6 23933347 23933575 -158481667 - L1PA14 LINE L1 0 6161 5933 414 308 55 66 chr6 23935036 23935416 -158479826 + HAL1b LINE L1 52 427 -921 313 340 52 7 chr6 23935417 23935570 -158479672 + HAL1b LINE L1 451 610 -738 258 71 18 36 chr6 23935902 23935958 -158479284 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr6 23936389 23936418 -158478824 + AT_rich Low_complexity Low_complexity 1 29 0 225 224 31 31 chr6 23936537 23936635 -158478607 + L1MDa LINE L1 1299 1396 -5144 474 283 83 40 chr6 23936853 23937178 -158478064 + HAL1 LINE L1 1329 1667 -840 978 184 41 30 chr6 23937241 23937508 -158477734 - L1MA9 LINE L1 -771 5375 5106 * 3525 184 34 35 chr6 23937504 23938265 -158476977 + L1MA9 LINE L1 5347 6106 -206 21 36 0 0 chr6 23938385 23938413 -158476829 + AT_rich Low_complexity Low_complexity 1 28 0 811 231 121 5 chr6 23938417 23938616 -158476626 + MER58A DNA MER1_type 3 224 0 252 265 46 97 chr6 23938668 23938864 -158476378 + L1ME4a LINE L1 5922 6107 -14 2667 174 6 33 chr6 23940624 23941105 -158474137 + LOR1a LTR ERV1 1 469 -28 1484 77 87 0 chr6 23941105 23941313 -158473929 + MER30 DNA MER1_type 5 230 0 2667 174 6 33 chr6 23941313 23941342 -158473900 + LOR1a LTR ERV1 469 497 0 180 394 106 22 chr6 23941524 23941704 -158473538 + L2 LINE L2 3077 3271 -1 236 254 34 0 chr6 23942432 23942491 -158472751 - MIR SINE MIR -62 146 86 187 227 23 0 chr6 23944026 23944070 -158471172 + L2 LINE L2 2847 2891 -423 1545 143 91 7 chr6 23944920 23945206 -158470036 - L1MC1 LINE L1 -10 6323 6014 554 239 32 13 chr6 23945644 23945799 -158469443 - MER103 DNA DNA -2 164 7 1703 90 0 8 chr6 23945893 23946127 -158469115 + AluY SINE Alu 74 305 -6 23 54 0 0 chr6 23946250 23946287 -158468955 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 23946559 23946582 -158468660 + AT_rich Low_complexity Low_complexity 1 23 0 236 342 95 40 chr6 23946656 23946747 -158468495 + MIR SINE MIR 1 86 -176 1628 113 4 21 chr6 23946747 23946985 -158468257 - AluSq SINE Alu -79 234 1 236 342 95 40 chr6 23946985 23947115 -158468127 + MIR SINE MIR 86 234 -28 2269 147 76 27 chr6 23947866 23948275 -158466967 + Tigger2a DNA MER2_type 6 434 0 385 296 53 40 chr6 23948588 23948740 -158466502 - MER5B DNA MER1_type -24 154 1 572 175 21 0 chr6 23949204 23949301 -158465941 + MER81 DNA DNA 15 113 -1 2213 118 3 10 chr6 23949997 23950311 -158464931 - AluSx SINE Alu 0 312 1 2273 121 40 32 chr6 23951929 23952301 -158462941 - THE1C LTR MaLR 0 375 1 2201 101 7 7 chr6 23952710 23953008 -158462234 - AluSx SINE Alu -1 311 14 22 35 0 0 chr6 23955378 23955407 -158459835 + AT_rich Low_complexity Low_complexity 1 29 0 2124 84 3 21 chr6 23955409 23955693 -158459549 + AluY SINE Alu 21 299 -12 882 169 11 45 chr6 23955693 23955870 -158459372 + AluJb SINE Alu 134 304 -8 243 170 0 0 chr6 23956167 23956214 -158459028 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 526 101 13 13 chr6 23956296 23956375 -158458867 - MADE1 DNA Mariner 0 80 2 302 310 113 58 chr6 23956654 23956940 -158458302 + L1 LINE L1 3264 3584 -2562 1939 196 16 27 chr6 23956940 23957307 -158457935 - MLT1A1 LTR MaLR -2 363 1 302 310 113 58 chr6 23957307 23957455 -158457787 + L1 LINE L1 3584 3722 -2424 397 351 11 22 chr6 23957634 23957819 -158457423 + MER5A DNA MER1_type 6 188 -1 213 250 0 33 chr6 23958133 23958193 -158457049 - L2 LINE L2 0 3272 3215 254 295 33 58 chr6 23959975 23960185 -158455057 + MER20B DNA MER1_type 3 214 -5 198 0 0 0 chr6 23960222 23960244 -158454998 + (A)n Simple_repeat Simple_repeat 1 22 0 245 235 20 0 chr6 23960305 23960356 -158454886 + MLT1H1 LTR MaLR 1 52 -503 353 199 193 64 chr6 23960548 23960719 -158454523 + MLT1H1 LTR MaLR 327 519 -36 1222 160 5 0 chr6 23960964 23961158 -158454084 + MSTB LTR MaLR 1 195 -231 882 81 0 16 chr6 23961171 23961294 -158453948 + AluSg/x SINE Alu 177 297 -15 1221 169 42 17 chr6 23961320 23961557 -158453685 + MSTB LTR MaLR 184 426 0 22 0 0 0 chr6 23961598 23961620 -158453622 + AT_rich Low_complexity Low_complexity 1 22 0 296 271 98 57 chr6 23961641 23961763 -158453479 + L2 LINE L2 3180 3306 -7 2281 103 3 6 chr6 23961853 23962165 -158453077 + AluSp SINE Alu 1 311 -2 225 0 0 0 chr6 23962433 23962458 -158452784 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr6 23962458 23962492 -158452750 + (TA)n Simple_repeat Simple_repeat 2 35 0 275 0 29 0 chr6 23963243 23963278 -158451964 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 825 62 0 0 chr6 23963281 23963378 -158451864 - L1PA10 LINE L1 -32 6136 6040 320 228 120 0 chr6 23963472 23963564 -158451678 - MIR SINE MIR -6 256 154 27700 129 14 12 chr6 23963587 23969957 -158445285 + L1PA8A LINE L1 1 6441 -5 193 360 0 27 chr6 23969968 23970043 -158445199 - MIR SINE MIR -71 137 65 267 367 47 12 chr6 23970085 23970254 -158444988 - MIR SINE MIR -78 184 10 440 297 57 35 chr6 23970627 23970856 -158444386 - MLT1J2 LTR MaLR -216 234 1 22 0 0 0 chr6 23972760 23972782 -158442460 + AT_rich Low_complexity Low_complexity 1 22 0 513 167 49 0 chr6 23972782 23972884 -158442358 - L1MA8 LINE L1 -1 6290 6184 43 0 0 0 chr6 23972908 23972951 -158442291 + AT_rich Low_complexity Low_complexity 1 43 0 2238 114 8 40 chr6 23972951 23973328 -158441914 - L1MA8 LINE L1 -110 6181 5817 463 261 118 26 chr6 23973474 23973669 -158441573 - MIR SINE MIR -35 227 15 228 287 23 23 chr6 23973850 23973937 -158441305 + GA-rich Low_complexity Low_complexity 2 88 0 543 123 0 37 chr6 23973959 23974061 -158441181 - L1P5 LINE L1 -355 5801 5707 237 65 0 0 chr6 23974624 23974655 -158440587 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3250 125 28 10 chr6 23974655 23975160 -158440082 - LTR9B LTR ERV1 -89 555 42 16875 110 28 18 chr6 23975161 23975486 -158439756 - HUERS-P3b LTR ERV1 -1 7417 7097 11956 83 5 0 chr6 23975486 23977807 -158437435 + L1PA7 LINE L1 3825 6152 -2 16875 110 28 18 chr6 23977807 23980078 -158435164 - HUERS-P3b LTR ERV1 -321 7097 4839 13324 108 131 123 chr6 23980071 23983102 -158432140 - HUERS-P3b LTR ERV1 -3544 3874 747 * 834 131 82 14 chr6 23983110 23983268 -158431974 - HUERS-P3b LTR ERV1 -6859 559 410 420 175 52 62 chr6 23983254 23983351 -158431891 - HUERS-P3b LTR ERV1 -7322 96 1 * 1340 129 0 5 chr6 23983351 23983552 -158431690 - LTR9B LTR ERV1 0 644 445 2073 137 3 0 chr6 23983946 23984239 -158431003 - AluSq SINE Alu -17 296 3 295 317 48 35 chr6 23984275 23984420 -158430822 - L2 LINE L2 -185 3087 2941 224 380 96 0 chr6 23984787 23984974 -158430268 - L2 LINE L2 -824 2490 2286 452 160 9 66 chr6 23985260 23985366 -158429876 + MER58 DNA MER1_type 2306 2405 -15 1596 179 164 3 chr6 23987895 23988236 -158427006 + MSTD LTR MaLR 1 396 0 2039 85 19 11 chr6 23988844 23989115 -158426127 + AluSg1 SINE Alu 21 293 -16 336 48 0 0 chr6 23989135 23989177 -158426065 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr6 23991784 23991805 -158423437 + AT_rich Low_complexity Low_complexity 1 21 0 551 262 48 83 chr6 23992092 23992405 -158422837 + MLT1H LTR MaLR 219 520 -29 433 256 69 113 chr6 23992525 23992931 -158422311 - L1ME3A LINE L1 -232 5938 5551 456 289 125 32 chr6 23992940 23993183 -158422059 - MLT1J1 LTR MaLR -180 266 1 534 265 6 41 chr6 23993265 23993435 -158421807 - MIR SINE MIR -70 192 29 362 354 94 9 chr6 23993597 23993916 -158421326 + L2 LINE L2 1786 2131 -1183 27 0 0 0 chr6 23993970 23993997 -158421245 + AT_rich Low_complexity Low_complexity 1 27 0 475 250 47 20 chr6 23994327 23994475 -158420767 + L2 LINE L2 2931 3082 -190 262 296 326 20 chr6 23994799 23994995 -158420247 - L3 LINE CR1 -727 850 595 280 276 98 32 chr6 23995396 23995519 -158419723 - MIR SINE MIR -34 228 98 215 333 50 10 chr6 23996239 23996338 -158418904 - MIR SINE MIR -122 140 38 326 313 85 36 chr6 23996668 23996892 -158418350 + MIR SINE MIR 28 262 0 7981 111 95 96 chr6 23997014 23998711 -158416531 + pTR5 LTR ERV1 743 2438 0 1968 179 48 59 chr6 23998921 23999247 -158415995 - MLT2C2 LTR ERVL -11 453 132 1663 179 0 60 chr6 23999247 23999566 -158415676 - AluJb SINE Alu -12 300 1 1968 179 48 59 chr6 23999566 23999697 -158415545 - MLT2C2 LTR ERVL -332 132 1 2019 250 44 18 chr6 24000257 24000813 -158414429 - MER77 LTR ERV1 -4 601 54 520 290 94 27 chr6 24000924 24001148 -158414094 - MIR SINE MIR -10 252 14 1099 267 99 28 chr6 24001200 24001664 -158413578 - Charlie2 DNA MER1_type -2251 531 35 210 37 0 0 chr6 24002151 24002178 -158413064 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1900 111 15 0 chr6 24002179 24002440 -158412802 - AluSx SINE Alu -47 265 1 23 0 0 0 chr6 24002780 24002803 -158412439 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 24003580 24003602 -158411640 + AT_rich Low_complexity Low_complexity 1 22 0 2396 101 0 0 chr6 24005000 24005308 -158409934 - AluSq SINE Alu -5 308 1 250 282 0 13 chr6 24006539 24006617 -158408625 + CT-rich Low_complexity Low_complexity 1 77 0 318 276 0 32 chr6 24007493 24007616 -158407626 + MER115 DNA AcHobo 111 229 -464 274 310 129 23 chr6 24007813 24007984 -158407258 + L2 LINE L2 2897 3085 -187 389 248 302 0 chr6 24008761 24008910 -158406332 - MIR SINE MIR -30 232 39 361 248 283 0 chr6 24009527 24009672 -158405570 + MER5A DNA MER1_type 4 189 0 4353 193 72 1 chr6 24010198 24011205 -158404037 + Tigger6a DNA MER2_type 2 1079 -4 504 96 21 11 chr6 24011207 24011291 -158403951 + (TAGA)n Simple_repeat Simple_repeat 1 88 -7 3643 102 0 2 chr6 24011291 24011809 -158403433 + L1PA13 LINE L1 5640 6156 -7 504 96 21 11 chr6 24011809 24011818 -158403424 + (TAGA)n Simple_repeat Simple_repeat 88 95 0 27 73 0 0 chr6 24012285 24012340 -158402902 + AT_rich Low_complexity Low_complexity 1 55 0 300 264 182 0 chr6 24012793 24012903 -158402339 + MLT1J2 LTR MaLR 200 329 -121 476 173 233 40 chr6 24013056 24013206 -158402036 + MER3 DNA MER1_type 6 184 -25 1384 118 45 9 chr6 24013529 24013749 -158401493 + MER30 DNA MER1_type 1 228 -2 2251 71 0 0 chr6 24014356 24014692 -158400550 - AluY SINE Alu 0 336 1 1534 234 0 7 chr6 24017020 24017324 -158397918 + AluJo SINE Alu 2 303 -9 2070 113 20 13 chr6 24017677 24017977 -158397265 - AluSx SINE Alu -10 302 1 248 336 86 31 chr6 24018370 24018498 -158396744 + MIR3 SINE MIR 12 146 -62 296 255 10 20 chr6 24018745 24018847 -158396395 + MER103 DNA DNA 12 112 -54 23 0 0 0 chr6 24019120 24019143 -158396099 + AT_rich Low_complexity Low_complexity 1 23 0 2103 126 34 0 chr6 24022117 24022410 -158392832 + AluSx SINE Alu 1 303 -9 1352 134 40 27 chr6 24022538 24022762 -158392480 + AluJb SINE Alu 86 312 0 254 344 21 11 chr6 24023013 24023106 -158392136 + MIR SINE MIR 38 131 -131 2052 99 16 43 chr6 24023115 24023248 -158391994 + AluSg SINE Alu 2 137 -173 2300 81 0 3 chr6 24023248 24023544 -158391698 + AluY SINE Alu 1 295 -16 2052 99 16 43 chr6 24023544 24023713 -158391529 + AluSg SINE Alu 137 296 -14 413 354 74 41 chr6 24023715 24024501 -158390741 - L2 LINE L2 -1 3271 2463 2078 105 25 4 chr6 24024538 24024847 -158390395 + AluSx SINE Alu 1 315 0 213 108 0 0 chr6 24026302 24026339 -158388903 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1991 116 4 0 chr6 24026343 24026618 -158388624 - AluSg SINE Alu -34 276 1 509 274 14 56 chr6 24026799 24027014 -158388228 + LTR33 LTR ERVL 7 212 -309 235 222 30 121 chr6 24027233 24027332 -158387910 - MIR SINE MIR -66 142 53 458 275 48 53 chr6 24027342 24027549 -158387693 - MLT1K LTR MaLR -22 566 361 1560 204 106 10 chr6 24028620 24029037 -158386205 + MER101 LTR ERV1 6 462 -12 22 0 0 0 chr6 24029192 24029214 -158386028 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 24030558 24030581 -158384661 + AT_rich Low_complexity Low_complexity 1 23 0 181 355 51 29 chr6 24032917 24033055 -158382187 + L3b LINE CR1 1356 1496 -87 180 0 0 0 chr6 24033138 24033158 -158382084 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 213 196 0 0 chr6 24033601 24033652 -158381590 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 188 67 33 0 chr6 24034195 24034225 -158381017 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1261 191 89 18 chr6 24034358 24034517 -158380725 - AluJo SINE Alu -10 302 156 234 0 0 0 chr6 24034517 24034543 -158380699 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1261 191 89 18 chr6 24034543 24034665 -158380577 - AluJo SINE Alu -156 156 1 3686 163 319 64 chr6 24035026 24036379 -158378863 + pTR5 LTR ERV1 741 2438 0 2266 107 3 0 chr6 24037376 24037674 -158377568 + AluSx SINE Alu 1 299 -13 1689 165 65 108 chr6 24038544 24038987 -158376255 + MSTA LTR MaLR 1 424 -4 9096 160 8 18 chr6 24038989 24039226 -158376016 + MSTA-int LTR MaLR 1 239 -1132 2328 94 0 22 chr6 24039226 24039544 -158375698 + AluY SINE Alu 1 311 0 9096 160 8 18 chr6 24039544 24040972 -158374270 + MSTA-int LTR MaLR 239 1370 -1 1797 194 71 22 chr6 24040973 24041381 -158373861 + MSTA LTR MaLR 1 428 0 2189 136 14 27 chr6 24041451 24041820 -158373422 + THE1B LTR MaLR 1 364 0 360 184 11 49 chr6 24041996 24042181 -158373061 + GA-rich Low_complexity Low_complexity 2 179 0 1354 284 99 42 chr6 24042234 24042542 -158372700 + L1ME LINE L1 97 386 -5875 324 0 0 0 chr6 24042542 24042578 -158372664 + (TG)n Simple_repeat Simple_repeat 2 37 0 1354 284 99 42 chr6 24042578 24043547 -158371695 + L1ME LINE L1 386 1299 -4962 2380 63 11 0 chr6 24043547 24043832 -158371410 + AluY SINE Alu 1 288 -23 1354 284 99 42 chr6 24043832 24044076 -158371166 + L1ME LINE L1 1299 1528 -4733 474 18 0 0 chr6 24044076 24044131 -158371111 + (TA)n Simple_repeat Simple_repeat 2 56 0 1354 284 99 42 chr6 24044131 24044290 -158370952 + L1ME LINE L1 1528 1942 -4319 277 259 0 116 chr6 24045363 24045475 -158369767 + MER58 DNA MER1_type 1 99 -2321 472 192 0 19 chr6 24045489 24045593 -158369649 + MER58 DNA MER1_type 2319 2420 0 2234 71 3 0 chr6 24045681 24045963 -158369279 + AluY SINE Alu 25 307 -4 2050 125 7 3 chr6 24046072 24046368 -158368874 + AluSg SINE Alu 1 297 -13 718 286 160 3 chr6 24046445 24046770 -158368472 + MLT1G1 LTR MaLR 6 381 -214 244 164 0 49 chr6 24046830 24046891 -158368351 + MLT1G1 LTR MaLR 474 531 -24 21 0 0 0 chr6 24047631 24047652 -158367590 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 24047952 24047988 -158367254 + AT_rich Low_complexity Low_complexity 1 36 0 227 333 104 22 chr6 24050103 24050332 -158364910 - L2 LINE L2 -905 2409 2169 1001 222 15 0 chr6 24050769 24050967 -158364275 - MER20 DNA MER1_type -3 216 16 1529 199 104 40 chr6 24051002 24051500 -158363742 + MER39 LTR ERV1 1 707 0 28 0 0 0 chr6 24052659 24052687 -158362555 + AT_rich Low_complexity Low_complexity 1 28 0 934 195 71 122 chr6 24053356 24053751 -158361491 - MER57A LTR ERV1 0 403 29 2286 95 0 0 chr6 24054128 24054422 -158360820 - AluSg SINE Alu -13 297 4 401 175 0 12 chr6 24056110 24056190 -158359052 - MADE1 DNA Mariner 0 80 2 305 255 78 20 chr6 24056205 24056307 -158358935 + MIR SINE MIR 100 207 -55 1012 187 22 49 chr6 24057193 24057418 -158357824 + MER20 DNA MER1_type 1 219 0 352 326 16 43 chr6 24058629 24058813 -158356429 + MIR SINE MIR 53 231 -31 30 59 0 0 chr6 24059782 24059833 -158355409 + AT_rich Low_complexity Low_complexity 1 51 0 384 77 0 0 chr6 24060157 24060209 -158355033 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1199 94 0 6 chr6 24060221 24060402 -158354840 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 210 191 0 0 chr6 24062298 24062340 -158352902 + GA-rich Low_complexity Low_complexity 2 43 0 335 235 118 39 chr6 24062340 24062493 -158352749 - MER46A DNA MER2_type -71 165 1 * 651 195 0 8 chr6 24062372 24062495 -158352747 + MER46A DNA MER2_type 25 146 -90 605 291 94 10 chr6 24062498 24062701 -158352541 - MIR SINE MIR -41 221 2 609 170 0 0 chr6 24065012 24065124 -158350118 + (CA)n Simple_repeat Simple_repeat 2 113 0 1766 162 10 3 chr6 24065439 24065729 -158349513 - AluSx SINE Alu -20 292 1 211 290 0 29 chr6 24068247 24068316 -158346926 + GA-rich Low_complexity Low_complexity 3 69 0 2240 109 0 7 chr6 24069642 24069946 -158345296 - AluSx SINE Alu -10 302 1 2322 88 3 0 chr6 24070531 24070826 -158344416 + AluSp SINE Alu 1 296 -17 477 243 37 70 chr6 24072075 24072289 -158342953 - L2 LINE L2 -6 3307 3101 30 0 0 0 chr6 24072693 24072723 -158342519 + AT_rich Low_complexity Low_complexity 1 30 0 838 281 129 13 chr6 24073463 24073780 -158341462 + L1MDb LINE L1 7 360 -6049 228 277 80 9 chr6 24073784 24073896 -158341346 + L1MDb LINE L1 416 535 -5874 4217 218 78 30 chr6 24074003 24074703 -158340539 + L1MDb LINE L1 402 1067 -5339 2857 103 41 9 chr6 24074703 24075140 -158340102 + L1PA10 LINE L1 5718 6168 0 4217 218 78 30 chr6 24075140 24077047 -158338195 + L1MDb LINE L1 1067 3143 -3263 1163 85 0 20 chr6 24077047 24077200 -158338042 + AluSx SINE Alu 11 160 -152 555 266 54 15 chr6 24077234 24077493 -158337749 + L1MDb LINE L1 3140 3408 -2998 * 5633 148 30 39 chr6 24077460 24077548 -158337694 + L1PA16 LINE L1 4922 5009 -1417 1802 132 87 13 chr6 24077548 24077858 -158337384 - MER1B DNA MER1_type -4 333 1 5633 148 30 39 chr6 24077858 24079299 -158335943 + L1PA16 LINE L1 5009 6426 0 1773 262 24 25 chr6 24079280 24079743 -158335499 + L1MDb LINE L1 3366 3829 -2577 * 1946 146 7 10 chr6 24079743 24080051 -158335191 - AluSx SINE Alu -5 307 1 1773 262 24 25 chr6 24080051 24080256 -158334986 + L1MDb LINE L1 3829 4033 -2373 1221 274 48 60 chr6 24080528 24081031 -158334211 + LTR33 LTR ERVL 1 497 -24 21 71 0 0 chr6 24081206 24081248 -158333994 + AT_rich Low_complexity Low_complexity 1 42 0 301 364 42 12 chr6 24081320 24081485 -158333757 - MIR3 SINE MIR -29 179 10 43 0 0 19 chr6 24081577 24081589 -158333653 + AT_rich Low_complexity Low_complexity 1 12 -41 2197 55 55 7 chr6 24081589 24081863 -158333379 - AluY SINE Alu -19 292 6 43 0 0 19 chr6 24081863 24081904 -158333338 + AT_rich Low_complexity Low_complexity 12 53 0 27 0 0 0 chr6 24082004 24082031 -158333211 + AT_rich Low_complexity Low_complexity 1 27 0 218 216 34 102 chr6 24084138 24084226 -158331016 + L2 LINE L2 3156 3237 -76 485 343 47 0 chr6 24084641 24084813 -158330429 + MIR3 SINE MIR 16 195 -13 609 231 53 24 chr6 24084860 24085029 -158330213 - MIR SINE MIR 0 262 89 659 318 133 30 chr6 24085051 24085504 -158329738 + L2 LINE L2 2774 3281 -32 225 0 0 0 chr6 24086760 24086785 -158328457 + (TG)n Simple_repeat Simple_repeat 2 26 0 1877 72 22 69 chr6 24087341 24087618 -158327624 + AluY SINE Alu 29 292 -19 2339 89 3 0 chr6 24087702 24088004 -158327238 - AluSx SINE Alu -9 303 1 224 245 0 29 chr6 24088098 24088200 -158327042 + (TA)n Simple_repeat Simple_repeat 1 99 0 22 35 0 0 chr6 24088200 24088229 -158327013 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 24090477 24090514 -158324728 + AT_rich Low_complexity Low_complexity 1 37 0 243 374 145 9 chr6 24090986 24091304 -158323938 - L2 LINE L2 -1032 2282 1922 5409 27 0 0 chr6 24091436 24092064 -158323178 + L1PA3 LINE L1 5525 6152 -3 2065 141 3 0 chr6 24092306 24092603 -158322639 + AluSx SINE Alu 1 298 -14 21 89 0 0 chr6 24092741 24092797 -158322445 + AT_rich Low_complexity Low_complexity 1 56 0 207 213 0 21 chr6 24093655 24093702 -158321540 + A-rich Low_complexity Low_complexity 4 49 0 246 315 134 0 chr6 24094221 24094348 -158320894 + L3b LINE CR1 1242 1385 -198 689 233 66 60 chr6 24094415 24094569 -158320673 - MER69 DNA AcHobo -168 2358 2206 1937 135 3 14 chr6 24094569 24094865 -158320377 + AluJb SINE Alu 1 293 -19 689 233 66 60 chr6 24094865 24095057 -158320185 - MER69 DNA AcHobo -320 2206 2010 * 783 279 85 31 chr6 24095055 24095349 -158319893 - MER69 DNA AcHobo -658 568 259 668 159 65 7 chr6 24095371 24095509 -158319733 + L1MA10 LINE L1 6174 6319 -15 291 295 83 25 chr6 24095525 24095779 -158319463 - LTR41 LTR ERVL 0 795 506 1357 238 40 62 chr6 24096114 24096710 -158318532 + L1M4 LINE L1 4085 4667 -1479 954 247 67 43 chr6 24096903 24097279 -158317963 + L1M4 LINE L1 4597 4981 -1165 590 202 39 39 chr6 24097267 24097445 -158317797 + L1MA10 LINE L1 6155 6332 -2 * 398 254 52 104 chr6 24097874 24098047 -158317195 - MIR3 SINE MIR -4 204 41 21 0 0 0 chr6 24098531 24098552 -158316690 + AT_rich Low_complexity Low_complexity 1 21 0 668 254 90 59 chr6 24098552 24099029 -158316213 - L1ME4a LINE L1 0 6121 5630 335 237 138 26 chr6 24099991 24100154 -158315088 + MIR SINE MIR 3 198 -62 22 0 0 0 chr6 24100253 24100275 -158314967 + AT_rich Low_complexity Low_complexity 1 22 0 2211 100 0 7 chr6 24100442 24100741 -158314501 - AluSq SINE Alu -16 297 1 397 244 211 8 chr6 24100857 24100980 -158314262 - MER5A DNA MER1_type -27 162 15 1152 126 43 91 chr6 24100992 24101222 -158314020 + MER20 DNA MER1_type 1 219 0 183 140 35 53 chr6 24105349 24105406 -158309836 - MER5C DNA MER1_type -106 218 163 330 270 40 30 chr6 24105606 24105706 -158309536 - L2 LINE L2 0 3272 3172 194 349 0 0 chr6 24105898 24105964 -158309278 + MIR SINE MIR 82 147 -115 321 300 56 32 chr6 24105980 24106322 -158308920 + L2 LINE L2 1272 1709 -1605 556 216 0 0 chr6 24106382 24106507 -158308735 - MER3 DNA MER1_type 0 209 85 31 26 0 0 chr6 24107670 24107708 -158307534 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 71 chr6 24107947 24107989 -158307253 + AT_rich Low_complexity Low_complexity 1 39 0 3077 150 42 85 chr6 24107989 24108219 -158307023 + L1MB3 LINE L1 5445 5683 -500 1754 53 80 0 chr6 24108219 24108444 -158306798 + AluY SINE Alu 41 283 -28 3077 150 42 85 chr6 24108444 24108978 -158306264 + L1MB3 LINE L1 5683 6176 -7 294 247 21 10 chr6 24108978 24109075 -158306167 + (TA)n Simple_repeat Simple_repeat 1 98 0 590 301 55 47 chr6 24109083 24109319 -158305923 - MIR SINE MIR -20 242 5 5620 148 9 53 chr6 24109541 24111382 -158303860 - L1PB1 LINE L1 -1 6150 4396 2744 90 3 8 chr6 24161665 24162052 -158253190 + L1PA13 LINE L1 5777 6161 -2 1294 212 60 92 chr6 24162149 24162190 -158253052 - LTR54B LTR ERV1 -3 495 454 1493 88 5 0 chr6 24162190 24162405 -158252837 - L1PA7 LINE L1 -6 6148 5933 1294 212 60 92 chr6 24162405 24162449 -158252793 - LTR54B LTR ERV1 -44 454 410 2575 43 0 0 chr6 24162449 24162750 -158252492 + AluY SINE Alu 1 301 -10 1294 212 60 92 chr6 24162750 24163164 -158252078 - LTR54B LTR ERV1 -88 410 11 848 191 29 34 chr6 24163734 24163943 -158251299 + MER3 DNA MER1_type 1 208 -1 204 327 0 89 chr6 24164096 24164128 -158251114 + L2 LINE L2 3146 3179 -93 2448 50 0 0 chr6 24164128 24164431 -158250811 + L1PA8 LINE L1 5870 6172 0 204 327 0 89 chr6 24164431 24164499 -158250743 + L2 LINE L2 3179 3237 -35 226 224 13 105 chr6 24164539 24164615 -158250627 - MIR3 SINE MIR -1 207 139 676 283 97 72 chr6 24164681 24165123 -158250119 + MLT1L LTR MaLR 110 562 -53 1261 271 162 9 chr6 24165152 24165583 -158249659 - MLT1E LTR MaLR -96 497 1 181 344 67 0 chr6 24165583 24165673 -158249569 - MIR SINE MIR -58 150 55 340 353 27 0 chr6 24165707 24165894 -158249348 + MIR SINE MIR 70 261 -1 419 211 9 44 chr6 24166769 24166883 -158248359 - MIR SINE MIR 0 262 153 23 54 0 0 chr6 24167207 24167244 -158247998 + AT_rich Low_complexity Low_complexity 1 37 0 2035 143 0 7 chr6 24167428 24167729 -158247513 - AluSx SINE Alu -13 299 1 10320 202 49 54 chr6 24168951 24174512 -158240730 + L1MC1 LINE L1 46 5575 -1038 1306 212 24 28 chr6 24174512 24174800 -158240442 + AluJo SINE Alu 3 289 -23 10320 202 49 54 chr6 24174800 24175828 -158239414 + L1MC1 LINE L1 5575 6607 -6 217 147 80 0 chr6 24176539 24176614 -158238628 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 57 0 0 chr6 24177006 24177041 -158238201 + AT_rich Low_complexity Low_complexity 1 35 0 213 333 49 25 chr6 24178101 24178182 -158237060 - L2 LINE L2 -72 3200 3118 822 333 102 34 chr6 24179871 24180403 -158234839 - L2 LINE L2 -448 2866 2299 254 217 42 25 chr6 24180857 24180977 -158234265 + (TA)n Simple_repeat Simple_repeat 2 123 0 1908 179 14 19 chr6 24181458 24181821 -158233421 + MLT1A1 LTR MaLR 5 365 0 278 317 106 8 chr6 24183044 24183167 -158232075 - MIR SINE MIR -108 154 20 207 188 0 0 chr6 24183566 24183614 -158231628 + (TG)n Simple_repeat Simple_repeat 2 49 0 235 261 144 0 chr6 24184008 24184119 -158231123 - L1MC/D LINE L1 -1923 5885 5759 2113 124 0 0 chr6 24184221 24184512 -158230730 + AluSc SINE Alu 1 291 -18 363 44 0 0 chr6 24184512 24184557 -158230685 + (TA)n Simple_repeat Simple_repeat 1 45 0 426 346 112 23 chr6 24184575 24184968 -158230274 - L1MC/D LINE L1 -2124 5684 5257 2448 87 0 0 chr6 24185063 24185374 -158229868 + AluY SINE Alu 1 311 0 346 291 26 93 chr6 24185690 24185841 -158229401 - MIR3 SINE MIR -9 199 59 27 0 0 0 chr6 24187165 24187192 -158228050 + AT_rich Low_complexity Low_complexity 1 27 0 253 0 0 51 chr6 24188700 24188739 -158226503 + (CATA)n Simple_repeat Simple_repeat 4 40 0 762 306 101 8 chr6 24190708 24190956 -158224286 - HERV16 LTR ERVL -1901 3095 2825 668 246 7 7 chr6 24191305 24191443 -158223799 - L2 LINE L2 0 3313 3176 272 27 27 0 chr6 24191448 24191485 -158223757 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 1295 310 44 45 chr6 24191513 24192099 -158223143 - L2 LINE L2 -310 3003 2421 2070 267 116 45 chr6 24192109 24193005 -158222237 - L2 LINE L2 -2328 986 27 195 259 19 0 chr6 24193727 24193781 -158221461 + L2 LINE L2 3256 3310 -3 234 273 0 15 chr6 24193846 24193912 -158221330 - L2 LINE L2 -1 3312 3248 1039 200 192 90 chr6 24194107 24194270 -158220972 - MLT1D LTR MaLR 0 505 360 1975 115 7 4 chr6 24194270 24194540 -158220702 + AluSc SINE Alu 24 294 -15 1039 200 192 90 chr6 24194540 24194830 -158220412 - MLT1D LTR MaLR -145 360 6 259 133 17 17 chr6 24197799 24197859 -158217383 + (TA)n Simple_repeat Simple_repeat 1 60 0 394 293 61 7 chr6 24198280 24198427 -158216815 + MIR SINE MIR 100 254 -8 21 0 0 0 chr6 24199198 24199219 -158216023 + AT_rich Low_complexity Low_complexity 1 21 0 2383 84 3 0 chr6 24200194 24200493 -158214749 - AluSx SINE Alu -12 300 1 187 333 10 21 chr6 24200572 24200668 -158214574 + L2 LINE L2 2288 2382 -932 185 342 45 58 chr6 24200811 24200966 -158214276 + L2 LINE L2 2568 2720 -594 190 337 68 44 chr6 24201131 24201336 -158213906 + L2 LINE L2 2933 3142 -130 494 270 16 0 chr6 24201708 24201834 -158213408 - MER94 DNA DNA -3 131 4 280 249 3 31 chr6 24204344 24204466 -158210776 + L1ME3 LINE L1 5271 5389 -781 428 329 124 9 chr6 24204470 24204792 -158210450 + L1ME3 LINE L1 5561 5919 -243 1131 157 0 0 chr6 24204892 24205070 -158210172 - AluSg/x SINE Alu -2 310 133 1979 91 76 0 chr6 24205880 24206156 -158209086 - AluSq SINE Alu -16 297 1 358 247 54 11 chr6 24206893 24206986 -158208256 - L2 LINE L2 -16 3297 3201 202 375 109 11 chr6 24207141 24207408 -158207834 - L2 LINE L2 -1862 1452 1160 370 351 18 0 chr6 24208442 24208553 -158206689 + MIR3 SINE MIR 72 184 -24 417 188 9 18 chr6 24209725 24209837 -158205405 + GA-rich Low_complexity Low_complexity 1 111 0 2255 102 0 0 chr6 24210974 24211269 -158203973 + AluSc SINE Alu 1 295 -14 377 336 102 8 chr6 24211569 24211813 -158203429 + MLT1J LTR MaLR 52 318 -193 8196 64 13 3 chr6 24212745 24213805 -158201437 + MER11C LTR ERVK 1 1071 0 291 172 52 17 chr6 24213831 24213889 -158201353 - LTR40b LTR ERVL -1 461 402 317 141 14 0 chr6 24213894 24213965 -158201277 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 286 191 75 21 chr6 24213988 24214082 -158201160 - LTR40b LTR ERVL -98 364 266 244 219 0 85 chr6 24214375 24214457 -158200785 - LTR40a LTR ERVL -444 75 1 437 341 29 29 chr6 24214494 24214667 -158200575 - MIR SINE MIR -77 185 13 208 289 117 16 chr6 24214742 24214870 -158200372 + L2 LINE L2 3172 3312 -1 22 35 0 0 chr6 24218360 24218389 -158196853 + AT_rich Low_complexity Low_complexity 1 29 0 686 204 14 0 chr6 24218579 24218726 -158196516 - L1MB1 LINE L1 -3 6165 6017 336 24 0 0 chr6 24218907 24218948 -158196294 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chr6 24219697 24219722 -158195520 + AT_rich Low_complexity Low_complexity 1 25 0 663 279 10 32 chr6 24220760 24220985 -158194257 - MIR SINE MIR 0 262 47 330 176 44 11 chr6 24221981 24222072 -158193170 - L1MEc LINE L1 -4082 2314 2221 * 2302 251 156 10 chr6 24222068 24223039 -158192203 + L1M4 LINE L1 3707 4818 -1328 312 255 0 21 chr6 24223133 24223227 -158192015 + L1MC4 LINE L1 6612 6703 -1339 339 243 43 0 chr6 24223256 24223326 -158191916 - Tigger3(Golem) DNA MER2_type -1 3028 2956 2481 57 0 0 chr6 24223514 24223810 -158191432 - AluY SINE Alu -15 296 1 894 180 22 61 chr6 24223900 24224128 -158191114 + MER20 DNA MER1_type 1 219 0 2103 185 4 65 chr6 24224235 24224694 -158190548 + MSTB1 LTR MaLR 1 431 -1 23 0 0 0 chr6 24224927 24224950 -158190292 + AT_rich Low_complexity Low_complexity 1 23 0 2399 77 3 0 chr6 24226742 24227042 -158188200 + AluSx SINE Alu 1 301 -11 731 251 158 35 chr6 24227685 24228084 -158187158 + MLT1J2 LTR MaLR 1 448 -2 259 154 0 0 chr6 24228325 24228411 -158186831 - AluSc SINE Alu 0 332 247 1169 148 0 0 chr6 24228411 24228587 -158186655 - AluSx SINE Alu -136 176 1 387 268 0 0 chr6 24228855 24228937 -158186305 - L2 LINE L2 -6 3307 3226 22 0 0 0 chr6 24229971 24229993 -158185249 + AT_rich Low_complexity Low_complexity 1 22 0 976 152 7 0 chr6 24231299 24231466 -158183776 + FRAM SINE Alu 1 168 0 674 333 118 18 chr6 24231518 24231900 -158183342 - LTR33 LTR ERVL 0 521 102 300 276 35 0 chr6 24232437 24232524 -158182718 - MIR SINE MIR -92 170 81 405 240 240 27 chr6 24232747 24232972 -158182270 + L2 LINE L2 3041 3313 0 1914 149 0 7 chr6 24234726 24235022 -158180220 - AluSx SINE Alu -17 295 2 2162 76 13 48 chr6 24236114 24236429 -158178813 + AluSc SINE Alu 1 304 -5 798 248 60 54 chr6 24237029 24237562 -158177680 + L1M4 LINE L1 2883 3418 -2728 23 33 0 0 chr6 24237599 24237629 -158177613 + AT_rich Low_complexity Low_complexity 1 30 0 334 152 38 0 chr6 24237819 24237898 -158177344 + L1M4 LINE L1 3886 3967 -2179 21 0 0 0 chr6 24237993 24238014 -158177228 + AT_rich Low_complexity Low_complexity 1 21 0 285 300 71 0 chr6 24238090 24238230 -158177012 + L1M4 LINE L1 4455 4604 -1542 * 328 190 10 50 chr6 24238223 24238323 -158176919 - L1ME1 LINE L1 -232 5934 5839 * 347 147 20 108 chr6 24238305 24238407 -158176835 - L1MEc LINE L1 -6269 127 35 22 0 0 0 chr6 24238478 24238500 -158176742 + AT_rich Low_complexity Low_complexity 1 22 0 246 325 52 26 chr6 24239229 24239306 -158175936 + L2 LINE L2 3112 3190 -82 1120 291 94 31 chr6 24241604 24242184 -158173058 + L2 LINE L2 2704 3313 0 200 286 52 39 chr6 24242257 24242334 -158172908 - MIR SINE MIR -8 254 177 536 206 10 0 chr6 24242339 24242436 -158172806 - MER2 DNA MER2_type -247 98 1 377 306 75 7 chr6 24242457 24242604 -158172638 - MIR SINE MIR -95 167 11 1360 180 3 73 chr6 24243307 24243607 -158171635 + AluJo SINE Alu 4 282 -30 7530 30 0 0 chr6 24243627 24244666 -158170576 - L1PA4 LINE L1 -8 6147 5109 2880 32 0 0 chr6 24244666 24245011 -158170231 + L1PA4 LINE L1 4753 5097 -1049 494 286 71 71 chr6 24245191 24245600 -158169642 + HAL1 LINE L1 43 451 -2056 204 230 324 0 chr6 24246691 24246765 -158168477 + L2 LINE L2 3197 3294 -19 1398 219 40 23 chr6 24248449 24248796 -158166446 + MLT1A1 LTR MaLR 1 353 -12 21 0 0 0 chr6 24248900 24248921 -158166321 + AT_rich Low_complexity Low_complexity 1 21 0 491 289 29 33 chr6 24250002 24250256 -158164986 + L1MDa LINE L1 1710 2066 -835 2105 129 3 0 chr6 24250256 24250558 -158164684 - AluSx SINE Alu -9 303 1 491 289 29 33 chr6 24250558 24250606 -158164636 + L1MDa LINE L1 2066 2113 -788 48 72 0 0 chr6 24250628 24250725 -158164517 + AT_rich Low_complexity Low_complexity 1 97 0 369 267 59 34 chr6 24251139 24251375 -158163867 + L1MDa LINE L1 2689 2930 -3610 23 54 0 0 chr6 24253503 24253540 -158161702 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr6 24254908 24254945 -158160297 + AT_rich Low_complexity Low_complexity 1 37 0 258 167 0 0 chr6 24259330 24259390 -158155852 + (CGG)n Simple_repeat Simple_repeat 2 61 0 198 0 0 0 chr6 24259864 24259886 -158155356 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 278 346 109 6 chr6 24261665 24261821 -158153421 - MIR SINE MIR -71 191 20 634 316 56 16 chr6 24261908 24262158 -158153084 - MIR SINE MIR -1 261 2 352 212 24 0 chr6 24262659 24262744 -158152498 + L1PB4 LINE L1 6069 6155 -1 193 305 128 48 chr6 24264895 24265082 -158150160 + L2 LINE L2 3112 3313 0 286 367 166 20 chr6 24265443 24265642 -158149600 + MIR SINE MIR 29 256 -6 486 0 0 0 chr6 24265768 24265822 -158149420 + (TA)n Simple_repeat Simple_repeat 2 55 0 273 300 64 0 chr6 24266920 24267030 -158148212 - L2 LINE L2 -62 3251 3135 598 297 36 56 chr6 24267307 24267556 -158147686 - L2 LINE L2 -19 3294 3051 210 37 0 0 chr6 24273715 24273742 -158141500 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 22 56 0 0 chr6 24273966 24274002 -158141240 + AT_rich Low_complexity Low_complexity 1 36 0 249 340 53 101 chr6 24275176 24275552 -158139690 - L2 LINE L2 -1 3271 2914 1964 251 89 50 chr6 24275729 24276673 -158138569 + Zaphod DNA AcHobo 9 989 -3042 934 253 110 15 chr6 24276672 24277071 -158138171 + Zaphod DNA AcHobo 3595 4031 0 * 443 253 12 124 chr6 24278757 24279006 -158136236 + MIR SINE MIR 42 262 0 2361 118 25 3 chr6 24280598 24280954 -158134288 - THE1B LTR MaLR 0 364 1 1424 220 67 9 chr6 24281975 24282411 -158132831 + Charlie4a DNA MER1_type 47 507 -1 403 269 70 41 chr6 24283188 24283323 -158131919 + MIR SINE MIR 14 156 -106 414 39 0 0 chr6 24283323 24283375 -158131867 + (CAT)n Simple_repeat Simple_repeat 3 54 0 403 269 70 41 chr6 24283375 24283410 -158131832 + MIR SINE MIR 156 189 -73 741 289 121 46 chr6 24283954 24284408 -158130834 + L2 LINE L2 2373 2860 -454 352 333 9 9 chr6 24284717 24284825 -158130417 + L2 LINE L2 3163 3270 -2 214 355 145 15 chr6 24284826 24285026 -158130216 + L2 LINE L2 2225 2450 -864 274 273 0 26 chr6 24285450 24285527 -158129715 - MER5A DNA MER1_type -83 106 32 462 320 87 7 chr6 24285555 24285705 -158129537 + L2 LINE L2 3103 3264 -8 237 65 0 0 chr6 24286167 24286198 -158129044 + (CA)n Simple_repeat Simple_repeat 2 32 0 186 263 0 0 chr6 24287375 24287432 -158127810 + GA-rich Low_complexity Low_complexity 4 60 0 25 31 0 0 chr6 24288519 24288551 -158126691 + AT_rich Low_complexity Low_complexity 1 32 0 340 177 127 0 chr6 24288984 24289063 -158126179 - LTR33 LTR ERVL -18 503 415 * 491 290 87 22 chr6 24289058 24289241 -158126001 - LTR33 LTR ERVL -212 309 115 291 28 0 0 chr6 24289317 24289353 -158125889 + (CA)n Simple_repeat Simple_repeat 1 36 0 1788 178 0 7 chr6 24290014 24290306 -158124936 + AluJo SINE Alu 1 290 -22 2488 129 3 0 chr6 24290609 24290972 -158124270 + THE1B LTR MaLR 1 364 0 603 315 103 28 chr6 24291261 24291779 -158123463 + L2 LINE L2 2686 3228 -85 258 32 0 0 chr6 24291821 24291852 -158123390 + (CA)n Simple_repeat Simple_repeat 1 31 0 1499 75 5 0 chr6 24292013 24292242 -158123000 + AluY SINE Alu 97 326 0 1841 146 22 41 chr6 24292883 24293198 -158122044 - AluJo SINE Alu -3 309 1 1169 246 97 68 chr6 24293199 24293775 -158121467 - L1ME3A LINE L1 -213 5957 5365 360 364 0 7 chr6 24293798 24293938 -158121304 - MER91B DNA MER1_type -28 162 24 357 43 0 0 chr6 24294349 24294396 -158120846 + (CA)n Simple_repeat Simple_repeat 2 48 0 584 126 10 0 chr6 24296531 24296634 -158118608 + L1MA8 LINE L1 6185 6288 -3 425 316 86 6 chr6 24296651 24296825 -158118417 + MLT1J LTR MaLR 3 190 -321 1561 148 71 53 chr6 24298151 24298388 -158116854 - MER2 DNA MER2_type 0 344 98 2151 118 3 0 chr6 24298388 24298676 -158116566 - AluSx SINE Alu -20 292 4 1561 148 71 53 chr6 24298676 24298776 -158116466 - MER2 DNA MER2_type -246 98 1 2303 109 0 0 chr6 24299972 24300283 -158114959 - AluSx SINE Alu -1 311 1 243 295 84 63 chr6 24302128 24302223 -158113019 + MIR SINE MIR 37 133 -75 206 354 19 50 chr6 24302896 24303057 -158112185 - MIR SINE MIR -75 187 32 288 0 0 0 chr6 24303235 24303267 -158111975 + (CA)n Simple_repeat Simple_repeat 2 33 0 926 172 59 5 chr6 24304883 24305086 -158110156 + L1MB2 LINE L1 5956 6169 -2 647 335 16 12 chr6 24305179 24305436 -158109806 + MIR SINE MIR 5 262 0 23 33 0 0 chr6 24305465 24305495 -158109747 + AT_rich Low_complexity Low_complexity 1 30 0 342 247 12 12 chr6 24305563 24305644 -158109598 + HAL1b LINE L1 65 145 -1203 783 296 34 24 chr6 24305976 24306270 -158108972 - MER102b DNA MER1_type 0 341 45 21 36 0 0 chr6 24306544 24306572 -158108670 + AT_rich Low_complexity Low_complexity 1 28 0 718 226 153 11 chr6 24307041 24307231 -158108011 + MER58A DNA MER1_type 6 222 -2 21 36 0 0 chr6 24307415 24307443 -158107799 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 24307587 24307616 -158107626 + AT_rich Low_complexity Low_complexity 1 29 0 236 262 36 0 chr6 24307742 24307826 -158107416 + L1M4 LINE L1 2378 2464 -3682 1879 226 78 31 chr6 24307826 24308502 -158106740 - L1MEc LINE L1 -3935 2890 2183 336 265 25 101 chr6 24308695 24308933 -158106309 - L1MEc LINE L1 -4811 1833 1517 735 39 64 29 chr6 24308933 24309556 -158105686 + (TA)n Simple_repeat Simple_repeat 1 645 0 580 271 109 26 chr6 24309557 24309818 -158105424 - L1MEc LINE L1 -5176 1649 1352 518 35 0 128 chr6 24309818 24309855 -158105387 + MADE1 DNA Mariner 3 24 -56 2269 96 7 0 chr6 24309855 24310147 -158105095 - AluSg SINE Alu -16 294 1 518 35 0 128 chr6 24310147 24310195 -158105047 + MADE1 DNA Mariner 24 77 -3 580 271 109 26 chr6 24310195 24310273 -158104969 - L1MEc LINE L1 -5473 1352 1282 385 148 267 40 chr6 24310311 24310412 -158104830 - MER58B DNA MER1_type -1 340 217 2252 111 0 0 chr6 24312498 24312796 -158102446 + AluSx SINE Alu 1 298 -14 187 315 157 0 chr6 24314644 24314733 -158100509 + L2 LINE L2 3207 3309 -4 1452 137 0 21 chr6 24315464 24315697 -158099545 - MER30 DNA MER1_type 0 230 3 1184 260 67 48 chr6 24315883 24316467 -158098775 - L1ME LINE L1 -4910 1170 599 207 0 0 0 chr6 24316467 24316490 -158098752 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1548 96 0 5 chr6 24316492 24316689 -158098553 - AluSc SINE Alu -31 278 83 1184 260 67 48 chr6 24316689 24316779 -158098463 - L1ME LINE L1 -5481 599 501 201 122 24 24 chr6 24317207 24317248 -158097994 + A-rich Low_complexity Low_complexity 2 42 0 2538 94 39 0 chr6 24317494 24317875 -158097367 - L1PA13 LINE L1 0 6163 5768 246 62 0 0 chr6 24317878 24317910 -158097332 + U5 snRNA snRNA 9 40 -76 194 125 0 25 chr6 24318124 24318164 -158097078 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 275 261 100 109 chr6 24318570 24318800 -158096442 - L3 LINE CR1 -179 1398 1171 180 359 0 33 chr6 24318822 24318914 -158096328 + MER5A DNA MER1_type 17 105 -84 317 336 40 24 chr6 24319514 24319639 -158095603 - MER5B DNA MER1_type -50 128 2 481 141 0 0 chr6 24320875 24320953 -158094289 + MADE1 DNA Mariner 1 78 -2 279 356 0 0 chr6 24320991 24321078 -158094164 + LTR67 LTR ERVL 130 216 -341 498 238 32 8 chr6 24321259 24321385 -158093857 + LTR67 LTR ERVL 429 557 0 2178 119 0 10 chr6 24323147 24323458 -158091784 + AluSx SINE Alu 1 308 -4 247 286 16 0 chr6 24323478 24323541 -158091701 + MER91B DNA MER1_type 6 69 -121 545 168 63 0 chr6 24323767 24323862 -158091380 - Tigger7 DNA MER2_type -1 2486 2386 * 689 130 35 9 chr6 24323852 24323967 -158091275 - Tigger7 DNA MER2_type -300 433 316 994 140 11 17 chr6 24323982 24324160 -158091082 - L1PB3 LINE L1 -7 6147 5971 2127 236 19 28 chr6 24324171 24324747 -158090495 - L1ME1 LINE L1 -174 5992 5422 237 372 31 16 chr6 24324982 24325111 -158090131 + L2 LINE L2 3183 3313 0 725 275 17 43 chr6 24325309 24325542 -158089700 - MIR SINE MIR 0 262 36 3123 175 88 14 chr6 24326825 24327382 -158087860 - MER44D DNA MER2_type -1882 705 90 2191 96 0 40 chr6 24327382 24327684 -158087558 + AluSg SINE Alu 1 290 -20 3123 175 88 14 chr6 24327684 24327782 -158087460 - MER44D DNA MER2_type -2497 90 1 250 366 84 8 chr6 24329340 24329471 -158085771 + L2 LINE L2 3132 3272 0 3299 72 21 0 chr6 24330348 24330781 -158084461 + MLT2A1 LTR ERVL 3 444 0 2373 84 0 0 chr6 24330813 24331111 -158084131 - AluY SINE Alu -13 298 1 229 365 47 0 chr6 24331279 24331386 -158083856 + MIR SINE MIR 3 114 -148 567 261 114 93 chr6 24331387 24331817 -158083425 + MLT1J1 LTR MaLR 3 441 -5 198 266 98 84 chr6 24331831 24331974 -158083268 + MIR SINE MIR 118 262 0 2390 83 32 69 chr6 24332912 24333319 -158081923 - MER48 LTR ERV1 -2 396 5 415 222 11 38 chr6 24334047 24334232 -158081010 + (TA)n Simple_repeat Simple_repeat 1 180 0 187 400 0 15 chr6 24334370 24334435 -158080807 + MIR SINE MIR 85 148 -60 23 0 0 0 chr6 24334746 24334769 -158080473 + AT_rich Low_complexity Low_complexity 1 23 0 2059 90 3 21 chr6 24335378 24335710 -158079532 - AluSq SINE Alu 0 327 1 585 336 21 21 chr6 24337812 24338053 -158077189 - MIR SINE MIR -15 247 7 807 147 32 108 chr6 24338491 24338742 -158076500 - Charlie1b DNA MER1_type -7 516 285 1049 120 54 0 chr6 24338756 24338923 -158076319 + MSTB2 LTR MaLR 1 176 -281 831 216 0 12 chr6 24338925 24339087 -158076155 - FRAM SINE Alu -17 159 1 1578 178 31 7 chr6 24339087 24339373 -158075869 + MSTB2 LTR MaLR 165 457 0 1061 243 39 4 chr6 24339373 24339632 -158075610 - Charlie1b DNA MER1_type -255 268 1 2061 96 3 81 chr6 24339752 24340075 -158075167 - AluSq SINE Alu -13 300 3 21 0 0 0 chr6 24340120 24340141 -158075101 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 24340395 24340418 -158074824 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr6 24341478 24341501 -158073741 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1901 153 0 10 chr6 24341509 24341804 -158073438 - AluJb SINE Alu -20 292 1 2382 90 3 0 chr6 24342394 24342694 -158072548 - AluSp SINE Alu -12 301 1 22 35 0 0 chr6 24342735 24342764 -158072478 + AT_rich Low_complexity Low_complexity 1 29 0 515 309 124 9 chr6 24344209 24344426 -158070816 + MIR SINE MIR 21 262 0 185 373 0 34 chr6 24348769 24348887 -158066355 + MIR3 SINE MIR 94 207 -1 524 305 30 25 chr6 24348934 24349131 -158066111 + MIR SINE MIR 15 212 -50 186 43 0 0 chr6 24349483 24349506 -158065736 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 406 360 23 11 chr6 24349564 24349739 -158065503 + MIR3 SINE MIR 28 204 -4 221 300 17 0 chr6 24349935 24349995 -158065247 - L2 LINE L2 -8 3264 3204 498 299 58 0 chr6 24350292 24350429 -158064813 + MIR SINE MIR 8 152 -110 215 374 79 14 chr6 24350694 24350908 -158064334 - L2 LINE L2 -834 2480 2253 684 171 173 11 chr6 24350966 24351168 -158064074 - MER33 DNA MER1_type -262 62 1 314 349 76 8 chr6 24351181 24351313 -158063929 - L2 LINE L2 0 3272 3132 1986 99 22 0 chr6 24351416 24351712 -158063530 - AluSg SINE Alu 0 304 3 315 345 94 27 chr6 24351787 24352115 -158063127 - L2 LINE L2 -107 3165 2816 225 320 52 56 chr6 24352198 24352429 -158062813 - L2 LINE L2 -1231 2083 1854 2152 103 36 3 chr6 24352679 24352981 -158062261 - AluSx SINE Alu 0 312 1 331 308 145 9 chr6 24353256 24353470 -158061772 - MIR SINE MIR -13 249 7 207 222 37 19 chr6 24354136 24354190 -158061052 + MIR SINE MIR 121 175 -87 246 32 0 0 chr6 24357408 24357439 -158057803 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 184 342 25 38 chr6 24358217 24358296 -158056946 + MIR SINE MIR 56 133 -75 394 381 118 23 chr6 24358511 24358910 -158056332 - L2 LINE L2 -21 3251 2815 257 273 0 0 chr6 24359869 24359924 -158055318 + polypyrimidine Low_complexity Low_complexity 6 60 0 630 257 23 6 chr6 24361497 24361668 -158053574 - L1ME3 LINE L1 -10 6152 5979 5393 156 48 16 chr6 24363559 24364584 -158050658 + L1MA7 LINE L1 4772 5859 -432 2126 69 4 4 chr6 24364584 24364861 -158050381 + AluY SINE Alu 22 298 -13 5393 156 48 16 chr6 24364861 24365309 -158049933 + L1MA7 LINE L1 5859 6291 0 192 77 0 0 chr6 24367567 24367593 -158047649 + (TA)n Simple_repeat Simple_repeat 2 27 0 548 318 57 0 chr6 24368011 24368203 -158047039 + MIR SINE MIR 58 260 -2 1440 70 0 0 chr6 24368876 24369062 -158046180 - L1PA7 LINE L1 -2 6152 5967 2476 222 30 29 chr6 24370107 24370324 -158044918 + L1PA6 LINE L1 4815 5030 -1124 1497 162 0 34 chr6 24370324 24370590 -158044652 - AluJb SINE Alu -21 291 35 2476 222 30 29 chr6 24370590 24371436 -158043806 + L1PA6 LINE L1 5030 5873 -281 300 378 51 0 chr6 24371436 24371632 -158043610 + L1ME LINE L1 5567 5772 -392 477 275 269 0 chr6 24373178 24373360 -158041882 + MIR SINE MIR 2 232 -30 1361 235 38 35 chr6 24373365 24373761 -158041481 + MLT2C1 LTR ERVL 1 397 0 1967 131 3 3 chr6 24374182 24374473 -158040769 - AluSx SINE Alu -21 291 1 317 269 66 51 chr6 24375518 24375689 -158039553 + MIR SINE MIR 18 191 -66 820 281 12 36 chr6 24375845 24376098 -158039144 - MIR SINE MIR -15 247 1 23 0 0 0 chr6 24376671 24376694 -158038548 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 24376859 24376884 -158038358 + AT_rich Low_complexity Low_complexity 1 25 0 429 311 77 16 chr6 24377010 24377193 -158038049 - MIR SINE MIR -56 206 13 280 187 198 55 chr6 24377616 24377707 -158037535 + MER69A DNA AcHobo 5 108 -69 460 292 65 18 chr6 24378726 24378894 -158036348 - MER5B DNA MER1_type -1 177 2 3728 56 2 0 chr6 24379047 24379515 -158035727 + L1PA7 LINE L1 5683 6151 -3 21 0 0 0 chr6 24379527 24379548 -158035694 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 24379625 24379650 -158035592 + AT_rich Low_complexity Low_complexity 1 25 0 426 219 0 109 chr6 24379712 24379831 -158035411 + MER81 DNA DNA 9 114 0 934 125 6 28 chr6 24380707 24380883 -158034359 + L1MA4 LINE L1 6123 6294 -6 755 199 7 0 chr6 24380911 24381057 -158034185 - L1ME1 LINE L1 -329 5837 5691 305 152 65 33 chr6 24381104 24381196 -158034046 - MER53 DNA DNA 0 189 95 358 307 42 18 chr6 24381898 24382064 -158033178 + MLT1H LTR MaLR 57 226 -323 787 250 105 34 chr6 24382345 24382753 -158032489 - Zaphod DNA AcHobo 0 4031 3595 333 155 36 101 chr6 24382755 24382974 -158032268 - Zaphod DNA AcHobo -3059 972 768 198 294 0 0 chr6 24383755 24383806 -158031436 - L2 LINE L2 -13 3300 3250 24 32 0 0 chr6 24384108 24384139 -158031103 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 24384207 24384240 -158031002 + AT_rich Low_complexity Low_complexity 1 33 0 1950 170 16 34 chr6 24384240 24384623 -158030619 - MLT1B LTR MaLR 0 390 15 492 333 31 13 chr6 24384773 24385001 -158030241 - MIR SINE MIR 0 262 31 23 0 0 0 chr6 24386313 24386336 -158028906 + AT_rich Low_complexity Low_complexity 1 23 0 1675 193 57 79 chr6 24390009 24390516 -158024726 - MLT1D LTR MaLR -8 497 2 246 351 87 54 chr6 24390769 24391284 -158023958 - L2 LINE L2 -418 2896 2365 324 298 140 28 chr6 24391843 24391910 -158023332 + L3 LINE CR1 67 125 -1452 2670 128 21 9 chr6 24391910 24392333 -158022909 - MSTA LTR MaLR 0 428 1 324 298 140 28 chr6 24392333 24392443 -158022799 + L3 LINE CR1 125 264 -1313 553 314 173 28 chr6 24392554 24393085 -158022157 + L3 LINE CR1 716 1323 -254 225 269 60 15 chr6 24393097 24393164 -158022078 - MER34C LTR ERV1 0 585 516 260 66 49 16 chr6 24393172 24393233 -158022009 + (TA)n Simple_repeat Simple_repeat 1 63 0 622 235 50 102 chr6 24393234 24393634 -158021608 - MER39 LTR ERV1 -69 638 260 318 208 42 62 chr6 24393609 24393705 -158021537 - LTR48B LTR ERV1 -547 97 4 * 279 316 68 28 chr6 24393709 24393886 -158021356 + L3 LINE CR1 1350 1533 -44 1784 106 110 7 chr6 24393938 24394211 -158021031 + AluSg SINE Alu 1 301 -9 360 217 65 0 chr6 24394490 24394582 -158020660 - MER5A DNA MER1_type -83 106 9 245 309 249 12 chr6 24394699 24394864 -158020378 + MIR SINE MIR 56 259 -3 246 296 22 52 chr6 24398001 24398136 -158017106 + L2 LINE L2 2925 3055 -217 242 235 12 0 chr6 24398490 24398571 -158016671 + (TA)n Simple_repeat Simple_repeat 1 82 0 186 103 0 0 chr6 24398589 24398618 -158016624 + (CA)n Simple_repeat Simple_repeat 2 30 0 305 277 25 17 chr6 24401174 24401293 -158013949 + L1ME4a LINE L1 5955 6074 -47 431 18 18 0 chr6 24401661 24401717 -158013525 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 870 84 17 0 chr6 24401982 24402101 -158013141 - AluSg/x SINE Alu -18 292 172 300 111 0 0 chr6 24402102 24402147 -158013095 + (T)n Simple_repeat Simple_repeat 1 45 0 205 261 87 14 chr6 24403114 24403183 -158012059 + MIR SINE MIR 30 103 -105 845 196 12 6 chr6 24403309 24403472 -158011770 - FRAM SINE Alu -12 164 1 22 35 0 0 chr6 24404522 24404551 -158010691 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr6 24405525 24405545 -158009697 + (A)n Simple_repeat Simple_repeat 1 20 0 215 154 0 26 chr6 24406554 24406593 -158008649 + GA-rich Low_complexity Low_complexity 2 39 0 217 159 32 0 chr6 24406666 24406729 -158008513 + GA-rich Low_complexity Low_complexity 1 65 0 322 265 341 0 chr6 24408901 24409033 -158006209 + MIR SINE MIR 9 185 -77 216 143 0 0 chr6 24409806 24409848 -158005394 + (TG)n Simple_repeat Simple_repeat 2 43 0 808 210 10 72 chr6 24410128 24410267 -158004975 - MER5A DNA MER1_type -6 183 58 2265 71 6 16 chr6 24410267 24410578 -158004664 + AluYb8 SINE Alu 1 308 -10 808 210 10 72 chr6 24410578 24410633 -158004609 - MER5A DNA MER1_type -131 58 1 372 270 74 60 chr6 24410740 24410955 -158004287 + MLT1G LTR MaLR 75 292 -298 229 225 12 38 chr6 24411135 24411215 -158004027 + MLT1G LTR MaLR 390 467 0 1098 166 10 20 chr6 24411648 24411847 -158003395 + AluJo SINE Alu 1 197 -115 185 283 0 33 chr6 24461872 24461932 -157953310 + MIR SINE MIR 156 213 -49 24 32 0 0 chr6 24462269 24462300 -157952942 + AT_rich Low_complexity Low_complexity 1 31 0 2841 0 0 3 chr6 24462433 24462741 -157952501 - AluYa5 SINE Alu -4 307 1 1938 217 125 96 chr6 24462922 24464104 -157951138 - L1MC5 LINE L1 -49 7912 6697 198 0 0 0 chr6 24465625 24465647 -157949595 + (T)n Simple_repeat Simple_repeat 1 22 0 209 233 0 0 chr6 24466590 24466633 -157948609 + A-rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr6 24466795 24466819 -157948423 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chr6 24467436 24467477 -157947765 + AT_rich Low_complexity Low_complexity 1 41 0 2339 181 26 28 chr6 24468784 24469249 -157945993 - MLT1C LTR MaLR -3 464 1 2152 127 0 0 chr6 24470543 24470842 -157944400 - AluSx SINE Alu -13 299 1 1351 182 54 124 chr6 24471085 24471585 -157943657 + MLT1C LTR MaLR 3 467 0 2104 122 7 3 chr6 24471946 24472426 -157942816 - AluSg SINE Alu 0 310 3 1906 145 3 3 chr6 24472889 24473171 -157942071 + AluSx SINE Alu 1 282 -30 213 39 0 0 chr6 24473178 24473204 -157942038 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 7352 181 12 29 chr6 24473318 24474599 -157940643 - L1PA16 LINE L1 -26 6140 4839 1319 175 0 118 chr6 24474599 24474947 -157940295 + AluJb SINE Alu 1 307 -5 7352 181 12 29 chr6 24474947 24476325 -157938917 - L1PA16 LINE L1 -1327 4839 3529 1652 205 13 19 chr6 24476324 24476699 -157938543 - L1 LINE L1 -1822 4324 3952 * 276 103 52 0 chr6 24476699 24476757 -157938485 + (TA)n Simple_repeat Simple_repeat 1 61 0 3741 237 43 26 chr6 24476764 24477977 -157937265 - L1 LINE L1 -2653 3493 2260 193 250 21 0 chr6 24478208 24478256 -157936986 - L2 LINE L2 -1 3312 3264 24 32 0 0 chr6 24478526 24478557 -157936685 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 24478607 24478628 -157936614 + AT_rich Low_complexity Low_complexity 1 21 0 307 290 93 0 chr6 24479252 24479359 -157935883 + MIR3 SINE MIR 87 203 -5 567 12 38 0 chr6 24479834 24479914 -157935328 + (TG)n Simple_repeat Simple_repeat 2 84 0 26 74 0 0 chr6 24480931 24480985 -157934257 + AT_rich Low_complexity Low_complexity 1 54 0 419 289 62 58 chr6 24483848 24484056 -157931186 - MIR SINE MIR -27 235 27 34 0 0 0 chr6 24484402 24484436 -157930806 + AT_rich Low_complexity Low_complexity 1 34 0 263 207 137 97 chr6 24484492 24484719 -157930523 + MLT1C LTR MaLR 1 236 -269 354 80 0 0 chr6 24484731 24484781 -157930461 + (GGGAA)n Simple_repeat Simple_repeat 5 54 0 1154 187 77 4 chr6 24484797 24485032 -157930210 + MLT1C LTR MaLR 206 457 -10 300 270 32 48 chr6 24486174 24486300 -157928942 + MER117 DNA MER1_type 2 125 -72 297 0 0 0 chr6 24487533 24487566 -157927676 + (CA)n Simple_repeat Simple_repeat 1 33 0 348 300 100 0 chr6 24488133 24488263 -157926979 + MIR SINE MIR 96 238 -24 261 240 40 0 chr6 24488293 24488368 -157926874 - MIR SINE MIR -111 151 74 204 130 43 22 chr6 24488938 24488984 -157926258 + (TA)n Simple_repeat Simple_repeat 1 47 0 2184 112 0 0 chr6 24489819 24490096 -157925146 + AluSg SINE Alu 1 277 -33 216 67 0 0 chr6 24491120 24491150 -157924092 + (CA)n Simple_repeat Simple_repeat 1 30 0 307 340 116 50 chr6 24491702 24492061 -157923181 - L2 LINE L2 0 3313 2915 2561 58 0 0 chr6 24492061 24492369 -157922873 + AluY SINE Alu 4 311 0 307 340 116 50 chr6 24492369 24492473 -157922769 - L2 LINE L2 -398 2915 2819 235 333 33 11 chr6 24492527 24492617 -157922625 - L2 LINE L2 -594 2720 2629 15831 160 21 8 chr6 24492990 24494476 -157920766 - L1MA2 LINE L1 0 7723 6257 2691 16 7 3 chr6 24494476 24494784 -157920458 - AluY SINE Alu -2 309 1 15831 160 21 8 chr6 24494784 24495086 -157920156 - L1MA2 LINE L1 -1466 6257 5960 333 0 0 0 chr6 24495086 24495123 -157920119 + (TG)n Simple_repeat Simple_repeat 2 38 0 15831 160 21 8 chr6 24495123 24497560 -157917682 - L1MA2 LINE L1 -1763 5960 3241 1547 202 0 7 chr6 24497557 24497839 -157917403 + L1M1 LINE L1 441 720 -6845 * 14111 162 74 11 chr6 24497836 24500333 -157914909 - L1MA2 LINE L1 -4893 2672 18 226 291 23 58 chr6 24500337 24500423 -157914819 + MIR SINE MIR 79 161 -101 2073 115 30 0 chr6 24500672 24501026 -157914216 + AluSq SINE Alu 1 363 0 1722 192 6 12 chr6 24501088 24501426 -157913816 - MER58B DNA MER1_type -4 337 2 838 259 42 5 chr6 24502381 24502593 -157912649 + MER58A DNA MER1_type 5 224 0 221 128 21 0 chr6 24502838 24502885 -157912357 + (TG)n Simple_repeat Simple_repeat 2 49 0 1385 179 6 88 chr6 24503103 24503285 -157911957 - AluJo SINE Alu -19 293 147 2407 83 0 0 chr6 24503285 24503585 -157911657 + AluSg SINE Alu 1 300 -10 1385 179 6 88 chr6 24503585 24503721 -157911521 - AluJo SINE Alu -165 147 1 677 291 205 24 chr6 24505327 24505708 -157909534 + MLT1J2 LTR MaLR 1 450 0 180 125 0 0 chr6 24506754 24506786 -157908456 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 513 362 119 15 chr6 24507025 24507293 -157907949 + L2 LINE L2 2977 3272 0 201 236 0 18 chr6 24508027 24508082 -157907160 + (TG)n Simple_repeat Simple_repeat 1 54 0 237 132 0 0 chr6 24508123 24508161 -157907081 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 192 77 0 0 chr6 24509244 24509270 -157905972 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 201 128 51 0 chr6 24509474 24509513 -157905729 + T-rich Low_complexity Low_complexity 2 42 0 1428 226 68 19 chr6 24509879 24510246 -157904996 - ERVL-B1 LTR ERVL -5378 386 2 1525 212 166 22 chr6 24510249 24510296 -157904946 - MLT2B1 LTR ERVL 0 520 481 396 0 0 0 chr6 24510296 24510340 -157904902 + (TG)n Simple_repeat Simple_repeat 1 44 0 363 44 0 0 chr6 24510342 24510387 -157904855 + (GA)n Simple_repeat Simple_repeat 2 46 0 1525 212 166 22 chr6 24510387 24510789 -157904453 - MLT2B1 LTR ERVL -39 481 3 559 157 20 13 chr6 24511185 24511338 -157903904 + CT-rich Low_complexity Low_complexity 3 156 0 1123 258 46 13 chr6 24512997 24513299 -157901943 + L1PB4 LINE L1 1 312 -6537 4003 142 77 1 chr6 24513299 24513960 -157901282 + MER50 LTR ERV1 1 711 -23 356 368 0 0 chr6 24513978 24514103 -157901139 + L1PB4 LINE L1 326 450 -6399 3067 254 14 4 chr6 24514936 24515672 -157899570 + L1PB4 LINE L1 1039 1781 -5068 645 25 0 0 chr6 24515673 24515752 -157899490 + (TCTCCC)n Simple_repeat Simple_repeat 1 79 0 5707 59 16 41 chr6 24515752 24516898 -157898344 + SVA Other Other 50 866 -520 6702 64 14 41 chr6 24516915 24517934 -157897308 + SVA Other Other 433 1386 0 11913 224 23 14 chr6 24517934 24521763 -157893479 + L1PB4 LINE L1 1773 5655 -1193 3981 145 1 18 chr6 24521763 24522441 -157892801 + L1PB4 LINE L1 6178 6847 -11 295 384 69 6 chr6 24522455 24522614 -157892628 - MIR3 SINE MIR -21 187 19 1409 239 37 17 chr6 24522855 24523210 -157892032 - MLT1A2 LTR MaLR -11 363 2 2105 129 119 35 chr6 24523374 24523717 -157891525 + MSTA LTR MaLR 1 383 -45 2236 102 3 0 chr6 24523717 24524011 -157891231 + AluSp SINE Alu 1 295 -18 2105 129 119 35 chr6 24524011 24524062 -157891180 + MSTA LTR MaLR 383 428 0 2395 81 0 0 chr6 24524134 24524429 -157890813 - AluY SINE Alu -16 295 1 1143 186 26 0 chr6 24524538 24524732 -157890510 + AluJb SINE Alu 84 282 -30 348 111 0 0 chr6 24524735 24524789 -157890453 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1684 150 3 41 chr6 24525022 24525316 -157889926 + AluSx SINE Alu 1 283 -29 25 0 0 0 chr6 24526184 24526209 -157889033 + AT_rich Low_complexity Low_complexity 1 25 0 372 119 0 0 chr6 24526508 24526567 -157888675 + (CA)n Simple_repeat Simple_repeat 2 60 0 313 283 68 27 chr6 24526736 24527008 -157888234 - L1MC4a LINE L1 -142 5979 5694 1818 111 92 0 chr6 24527010 24527272 -157887970 + AluSq SINE Alu 12 297 -16 276 250 111 0 chr6 24527274 24527346 -157887896 - LTR50 LTR ERVL -475 320 241 738 258 30 5 chr6 24527610 24527808 -157887434 - MER58A DNA MER1_type -1 223 21 23 78 0 0 chr6 24528028 24528079 -157887163 + AT_rich Low_complexity Low_complexity 1 51 0 1843 120 25 0 chr6 24528091 24528365 -157886877 + MER83C LTR ERV1 1 281 -92 1202 111 24 53 chr6 24528371 24528520 -157886722 + MER83C LTR ERV1 173 316 -57 2112 117 30 7 chr6 24528520 24528819 -157886423 - AluSx SINE Alu -6 306 1 1202 111 24 53 chr6 24528819 24528876 -157886366 + MER83C LTR ERV1 316 373 0 22 0 0 0 chr6 24528950 24528972 -157886270 + AT_rich Low_complexity Low_complexity 1 22 0 457 319 87 77 chr6 24529123 24529271 -157885971 + HAL1b LINE L1 16 161 -1187 273 57 0 0 chr6 24529271 24529306 -157885936 + (TG)n Simple_repeat Simple_repeat 2 36 0 457 319 87 77 chr6 24529306 24529509 -157885733 + HAL1b LINE L1 161 361 -987 345 47 0 0 chr6 24529509 24529552 -157885690 + (CA)n Simple_repeat Simple_repeat 2 44 0 457 319 87 77 chr6 24529552 24529775 -157885467 + HAL1b LINE L1 361 600 -748 1906 218 58 83 chr6 24529775 24529823 -157885419 - MLT2B3 LTR ERVL 0 554 506 695 62 10 0 chr6 24529823 24529920 -157885322 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 1906 218 58 83 chr6 24529920 24530439 -157884803 - MLT2B3 LTR ERVL -48 506 1 457 319 87 77 chr6 24530439 24530486 -157884756 + HAL1b LINE L1 600 645 -703 499 280 67 40 chr6 24530539 24530910 -157884332 + L1MEc LINE L1 1428 1808 -4588 2426 154 5 29 chr6 24530927 24531348 -157883894 + Tigger2a DNA MER2_type 3 413 -21 30 0 0 0 chr6 24531698 24531728 -157883514 + AT_rich Low_complexity Low_complexity 1 30 0 286 274 57 28 chr6 24533019 24533125 -157882117 + MIR SINE MIR 83 191 -71 903 213 23 32 chr6 24533197 24533413 -157881829 - MIR SINE MIR -48 214 1 33 25 0 0 chr6 24533629 24533669 -157881573 + AT_rich Low_complexity Low_complexity 1 40 0 961 236 71 46 chr6 24533674 24534068 -157881174 - L1ME3A LINE L1 -8 6162 5759 433 250 188 18 chr6 24534076 24534352 -157880890 - L1ME3A LINE L1 -554 5608 5286 772 308 89 31 chr6 24534363 24535361 -157879881 - L1ME3A LINE L1 -913 5233 4178 296 378 85 35 chr6 24535467 24536070 -157879172 + L2 LINE L2 1783 2415 -899 27 29 0 0 chr6 24537941 24537975 -157877267 + AT_rich Low_complexity Low_complexity 1 34 0 256 323 55 31 chr6 24538205 24538332 -157876910 + L2 LINE L2 3143 3272 0 188 170 43 0 chr6 24538521 24538568 -157876674 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 2158 132 7 0 chr6 24538757 24539067 -157876175 - AluSq SINE Alu -1 312 1 189 225 0 0 chr6 24539522 24539562 -157875680 + MIR SINE MIR 73 112 -150 21 36 0 0 chr6 24540917 24540945 -157874297 + AT_rich Low_complexity Low_complexity 1 28 0 653 285 26 0 chr6 24541937 24542130 -157873112 + MIR SINE MIR 52 249 -13 361 367 40 46 chr6 24542535 24543058 -157872184 - L2 LINE L2 -337 2977 2458 591 312 68 23 chr6 24543063 24543284 -157871958 - MIR SINE MIR -15 247 17 614 275 93 25 chr6 24543402 24543638 -157871604 + MIR SINE MIR 1 252 -10 208 356 89 0 chr6 24543656 24543717 -157871525 - L2 LINE L2 -1009 2305 2251 1802 205 3 19 chr6 24543717 24544088 -157871154 - MLT1A1 LTR MaLR 0 365 1 208 356 89 0 chr6 24544088 24544127 -157871115 - L2 LINE L2 -1063 2251 2196 372 253 72 103 chr6 24544283 24544631 -157870611 + HAL1 LINE L1 1439 1775 -732 377 282 122 69 chr6 24544712 24544871 -157870371 + L1M4 LINE L1 3877 4026 -2120 847 211 0 24 chr6 24544871 24545037 -157870205 - FRAM SINE Alu -3 163 2 377 282 122 69 chr6 24545037 24545298 -157869944 + L1M4 LINE L1 4026 4320 -1826 285 265 76 60 chr6 24545463 24545565 -157869677 + L1MC4a LINE L1 2678 2777 -3369 1542 199 2 91 chr6 24545565 24545971 -157869271 - MLT1A2 LTR MaLR -4 370 1 285 265 76 60 chr6 24545971 24546355 -157868887 + L1MC4a LINE L1 2777 3172 -2974 2448 79 0 3 chr6 24546525 24546828 -157868414 + AluSg SINE Alu 3 304 -6 1971 125 7 0 chr6 24546968 24547279 -157867963 + AluSx SINE Alu 1 313 0 2411 93 0 0 chr6 24547725 24548035 -157867207 + AluSx SINE Alu 1 310 -2 658 126 10 0 chr6 24548197 24548300 -157866942 + AluSp/q SINE Alu 201 304 -9 417 291 97 33 chr6 24548355 24548685 -157866557 + L1MC4a LINE L1 4491 4841 -1305 333 273 22 71 chr6 24548804 24548987 -157866255 + L1MC4a LINE L1 4994 5167 -979 1404 260 117 47 chr6 24549104 24549823 -157865419 + L1MC4a LINE L1 5260 6028 -1780 4888 28 0 0 chr6 24549881 24550453 -157864789 + L1PA3 LINE L1 5584 6155 0 21 0 0 31 chr6 24550453 24550466 -157864776 + AT_rich Low_complexity Low_complexity 1 13 -18 2938 60 3 5 chr6 24550466 24550846 -157864396 + L1PA7 LINE L1 5769 6147 -7 21 0 0 31 chr6 24550846 24550864 -157864378 + AT_rich Low_complexity Low_complexity 13 31 0 3020 137 46 61 chr6 24551119 24551774 -157863468 - MER39B LTR ERV1 -4 649 5 1267 139 48 10 chr6 24551797 24552229 -157863013 - LTR54 LTR ERV1 0 510 1 261 0 0 0 chr6 24553150 24553179 -157862063 + (T)n Simple_repeat Simple_repeat 1 29 0 2116 79 58 7 chr6 24554275 24554567 -157860675 + AluY SINE Alu 3 309 -2 2439 119 23 3 chr6 24555520 24555872 -157859370 - THE1B LTR MaLR -5 359 1 3425 116 51 75 chr6 24556115 24556779 -157858463 + MER39B LTR ERV1 6 653 0 401 237 51 8 chr6 24556969 24557087 -157858155 - MER103 DNA DNA -43 123 1 2012 139 0 23 chr6 24557529 24557838 -157857404 + AluSx SINE Alu 1 302 -10 237 83 0 0 chr6 24558634 24558670 -157856572 + (TC)n Simple_repeat Simple_repeat 1 36 0 212 57 0 29 chr6 24558711 24558746 -157856496 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 387 358 40 0 chr6 24559531 24559707 -157855535 + MIR SINE MIR 12 194 -68 2457 51 3 3 chr6 24559866 24560161 -157855081 + AluY SINE Alu 1 295 -16 29 28 0 0 chr6 24560539 24560575 -157854667 + AT_rich Low_complexity Low_complexity 1 36 0 532 330 35 5 chr6 24561665 24561862 -157853380 + L2 LINE L2 1728 1930 -1384 2548 246 70 21 chr6 24561866 24562965 -157852277 + L1ME1 LINE L1 5013 6166 0 630 265 13 57 chr6 24563021 24563251 -157851991 + L2 LINE L2 1918 2137 -1177 267 308 26 0 chr6 24563247 24563325 -157851917 - L2 LINE L2 -240 3073 2994 * 825 194 22 39 chr6 24563340 24563520 -157851722 - MER45A DNA AcHobo -1 177 1 895 317 54 38 chr6 24563523 24564248 -157850994 + L2 LINE L2 2550 3290 -23 216 0 0 0 chr6 24564248 24564272 -157850970 + (CA)n Simple_repeat Simple_repeat 2 25 0 354 139 12 93 chr6 24564373 24564459 -157850783 + MER116 DNA Mariner 2 80 0 216 0 0 0 chr6 24565854 24565878 -157849364 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 306 0 0 0 chr6 24565877 24565911 -157849331 + (TG)n Simple_repeat Simple_repeat 2 35 0 2509 52 0 19 chr6 24566132 24566441 -157848801 - AluY SINE Alu -8 303 1 391 302 16 31 chr6 24566784 24566913 -157848329 + MER5B DNA MER1_type 1 127 -51 596 240 53 7 chr6 24566930 24567080 -157848162 - L1ME3A LINE L1 -9 6161 6005 228 303 0 15 chr6 24567086 24567152 -157848090 + MER5B DNA MER1_type 114 178 0 323 369 38 0 chr6 24567245 24567402 -157847840 - MIR SINE MIR -54 208 46 461 266 190 11 chr6 24567403 24567587 -157847655 + MIR SINE MIR 8 224 -38 186 103 0 0 chr6 24568055 24568084 -157847158 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 190 267 229 19 chr6 24568629 24568734 -157846508 + MIR SINE MIR 17 143 -65 25 31 0 0 chr6 24569120 24569152 -157846090 + AT_rich Low_complexity Low_complexity 1 32 0 862 208 89 10 chr6 24569762 24569964 -157845278 - MER20 DNA MER1_type 0 219 2 385 267 29 0 chr6 24570036 24570141 -157845101 - MER103 DNA DNA -46 120 13 2125 116 3 0 chr6 24570302 24570595 -157844647 - AluSq SINE Alu -17 296 3 297 302 120 71 chr6 24570993 24571427 -157843815 + MLT1K LTR MaLR 134 588 0 2411 55 0 23 chr6 24573159 24573467 -157841775 + AluY SINE Alu 9 309 -2 577 296 71 15 chr6 24573493 24573689 -157841553 + MIR SINE MIR 32 238 -24 2220 113 0 3 chr6 24574807 24575117 -157840125 - AluSq SINE Alu -2 311 3 394 247 10 10 chr6 24575222 24575319 -157839923 - MER63 DNA MER1_type -288 772 676 1943 168 32 121 chr6 24577671 24578224 -157837018 + MLT1D LTR MaLR 2 505 0 272 155 0 17 chr6 24578269 24578327 -157836915 + (TA)n Simple_repeat Simple_repeat 1 57 0 2098 101 0 11 chr6 24578877 24579195 -157836047 - AluSx SINE Alu 0 315 1 190 0 67 0 chr6 24580239 24580269 -157834973 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1142 213 101 19 chr6 24580294 24580552 -157834690 + AluJo SINE Alu 1 279 -33 371 111 0 0 chr6 24580552 24580606 -157834636 + Alu SINE Alu 246 299 -3 2188 109 0 7 chr6 24582691 24582993 -157832249 - AluSq SINE Alu -13 300 1 2397 82 3 0 chr6 24583257 24583560 -157831682 - AluY SINE Alu -7 304 1 582 87 47 13 chr6 24586371 24586520 -157828722 + (CA)n Simple_repeat Simple_repeat 2 155 0 216 0 0 0 chr6 24586717 24586741 -157828501 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 221 296 185 37 chr6 24586761 24586896 -157828346 + MER5A DNA MER1_type 3 157 -32 * 471 270 169 7 chr6 24586780 24586928 -157828314 - MER5A DNA MER1_type -6 183 12 196 274 55 0 chr6 24587557 24587630 -157827612 + L2 LINE L2 561 637 -2677 526 345 101 27 chr6 24587859 24588422 -157826820 + L2 LINE L2 1465 2069 -1245 1919 166 7 0 chr6 24588745 24589047 -157826195 - AluJb SINE Alu -8 304 1 191 343 78 60 chr6 24589758 24589877 -157825365 + L2 LINE L2 3104 3228 -44 1691 177 34 95 chr6 24589877 24589992 -157825250 + MLT1C LTR MaLR 2 122 -345 2366 67 0 0 chr6 24589992 24590304 -157824938 + AluY SINE Alu 1 312 0 1691 177 34 95 chr6 24590304 24590683 -157824559 + MLT1C LTR MaLR 122 467 0 191 343 78 60 chr6 24590683 24590729 -157824513 + L2 LINE L2 3228 3272 0 301 231 97 75 chr6 24590812 24590946 -157824296 + MIR SINE MIR 126 262 0 309 279 19 39 chr6 24593114 24593218 -157822024 - MER20B DNA MER1_type -619 164 63 250 192 14 14 chr6 24594352 24594425 -157820817 + GA-rich Low_complexity Low_complexity 2 74 0 362 208 19 38 chr6 24595263 24595369 -157819873 + L1MC5 LINE L1 7810 7913 -48 2593 19 0 0 chr6 24595371 24595689 -157819553 - L1PA3 LINE L1 -754 5392 5075 6331 35 0 0 chr6 24595689 24596431 -157818811 + L1PA3 LINE L1 5405 6155 0 2283 213 33 59 chr6 24596599 24597227 -157818015 - LTR9 LTR ERV1 0 612 1 281 340 81 32 chr6 24597737 24597922 -157817320 + MIR SINE MIR 12 205 -57 301 292 57 57 chr6 24598086 24598295 -157816947 + L2 LINE L2 2071 2279 -1035 307 286 61 27 chr6 24648544 24648691 -157766551 - MIR SINE MIR -2 260 109 26 0 0 0 chr6 24651977 24652003 -157763239 + AT_rich Low_complexity Low_complexity 1 26 0 226 322 102 17 chr6 24652003 24652121 -157763121 - L2 LINE L2 0 3313 3186 202 196 43 0 chr6 24652995 24653041 -157762201 + MER91C DNA MER1_type 37 84 -56 639 98 0 0 chr6 24653054 24653146 -157762096 + (TA)n Simple_repeat Simple_repeat 1 92 0 1798 135 193 14 chr6 24653889 24654237 -157761005 - MSTA LTR MaLR -18 410 1 1086 213 57 92 chr6 24654348 24654752 -157760490 + MLT1B LTR MaLR 1 390 0 208 139 0 0 chr6 24655676 24655712 -157759530 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 971 194 16 0 chr6 24656360 24656546 -157758696 + MER5A DNA MER1_type 1 189 0 1049 276 103 61 chr6 24657317 24657879 -157757363 + MLT2F LTR ERVL 21 612 -51 1514 149 35 116 chr6 24657879 24658276 -157756966 - MLT1A1 LTR MaLR 0 365 1 1049 276 103 61 chr6 24658276 24658322 -157756920 + MLT2F LTR ERVL 612 655 -8 281 234 26 26 chr6 24658329 24658406 -157756836 + HERVL-F LTR ERVL 4 80 -5574 367 331 40 40 chr6 24658576 24658878 -157756364 - MLT1I LTR MaLR -45 364 63 351 310 38 70 chr6 24659153 24659440 -157755802 + HAL1b LINE L1 273 550 -798 2041 105 36 10 chr6 24660335 24660640 -157754602 + AluSp SINE Alu 1 313 0 347 306 81 16 chr6 24661064 24661541 -157753701 + L1MC/D LINE L1 3589 4097 -2049 15126 141 35 29 chr6 24661898 24663487 -157751755 + Tigger4(Zombi) DNA MER2_type 1 1616 -1115 1752 154 0 4 chr6 24663487 24663759 -157751483 - AluSx SINE Alu -13 299 29 15126 141 35 29 chr6 24663759 24664881 -157750361 + Tigger4(Zombi) DNA MER2_type 1616 2729 -2 23 68 0 0 chr6 24664928 24664972 -157750270 + AT_rich Low_complexity Low_complexity 1 44 0 377 309 80 56 chr6 24665019 24665331 -157749911 + L1MC/D LINE L1 4696 5020 -1126 23 0 0 0 chr6 24665472 24665495 -157749747 + AT_rich Low_complexity Low_complexity 1 23 0 483 339 76 31 chr6 24665571 24666043 -157749199 + L1MC/D LINE L1 5261 5760 -674 300 280 104 80 chr6 24666116 24666502 -157748740 + L1M4 LINE L1 2656 3050 -3096 1145 258 75 73 chr6 24666502 24667129 -157748113 - HAL1b LINE L1 -500 848 221 236 346 108 14 chr6 24667423 24667637 -157747605 - L2 LINE L2 -599 2715 2482 25 31 0 0 chr6 24667654 24667686 -157747556 + AT_rich Low_complexity Low_complexity 1 32 0 2428 56 0 7 chr6 24667688 24667991 -157747251 - AluY SINE Alu -10 301 1 619 294 97 27 chr6 24668164 24669236 -157746006 + L1M4 LINE L1 3564 4715 -1431 * 13602 158 13 16 chr6 24669230 24670435 -157744807 + L1P3 LINE L1 4 1210 -5251 189 0 0 0 chr6 24670435 24670456 -157744786 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 13602 158 13 16 chr6 24670456 24672928 -157742314 + L1P3 LINE L1 1210 3733 -2728 3205 127 21 6 chr6 24672957 24673471 -157741771 - L1P LINE L1 -2055 4091 3570 2242 96 6 0 chr6 24673472 24673785 -157741457 + L1PA8A LINE L1 5803 6117 -14 207 0 0 0 chr6 24673785 24673808 -157741434 + (CA)n Simple_repeat Simple_repeat 2 24 0 426 352 54 39 chr6 24673810 24674216 -157741026 + L1M4 LINE L1 4711 5122 -1024 256 294 0 16 chr6 24674319 24674380 -157740862 + L1M LINE L1 5257 5317 -845 1924 150 0 13 chr6 24674380 24674680 -157740562 + AluSx SINE Alu 1 296 -16 256 294 0 16 chr6 24674680 24674744 -157740498 + L1M LINE L1 5317 5380 -782 * 2838 240 62 42 chr6 24674737 24675923 -157739319 - L1MDa LINE L1 -2336 4204 2996 596 162 0 48 chr6 24675959 24676064 -157739178 - FLAM_A SINE Alu -42 100 1 1018 221 48 43 chr6 24676149 24676716 -157738526 - L1MDa LINE L1 -3658 2882 2316 * 22964 144 37 21 chr6 24676715 24677379 -157737863 - L1PA7 LINE L1 -5 6409 5757 2177 86 40 7 chr6 24677379 24677680 -157737562 - AluY SINE Alu 0 311 1 22964 144 37 21 chr6 24677680 24683347 -157731895 - L1PA7 LINE L1 -657 5757 2 27 29 0 0 chr6 24683399 24683433 -157731809 + AT_rich Low_complexity Low_complexity 1 34 0 642 174 96 0 chr6 24683488 24683603 -157731639 + FLAM_C SINE Alu 2 127 -16 293 357 94 13 chr6 24683899 24684123 -157731119 - MIR SINE MIR -14 248 7 29 47 0 0 chr6 24684238 24684281 -157730961 + AT_rich Low_complexity Low_complexity 1 43 0 1562 180 9 43 chr6 24684281 24684631 -157730611 - L1MA6 LINE L1 0 6300 5963 216 135 0 0 chr6 24685962 24685999 -157729243 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 222 196 0 54 chr6 24686443 24686499 -157728743 - L2 LINE L2 -5 3267 3215 32 57 0 0 chr6 24686759 24686812 -157728430 + AT_rich Low_complexity Low_complexity 1 53 0 2574 254 62 17 chr6 24688792 24689603 -157725639 - L1ME1 LINE L1 -5 6161 5315 3100 132 24 21 chr6 24689607 24690815 -157724427 + L1PA14 LINE L1 4775 6158 -3 749 199 27 63 chr6 24690869 24691090 -157724152 - L1ME1 LINE L1 -873 5273 5061 442 247 25 57 chr6 24691582 24691740 -157723502 + MER5A DNA MER1_type 7 159 -30 27 49 0 0 chr6 24692199 24692240 -157723002 + AT_rich Low_complexity Low_complexity 1 41 0 305 278 56 106 chr6 24693675 24693873 -157721369 - MER5A DNA MER1_type -1 188 1 202 290 16 0 chr6 24695681 24695743 -157719499 + CT-rich Low_complexity Low_complexity 1 63 0 181 116 23 23 chr6 24696804 24696847 -157718395 + (TA)n Simple_repeat Simple_repeat 2 44 0 2001 107 24 86 chr6 24697259 24697642 -157717600 - THE1C LTR MaLR -2 373 15 235 264 0 19 chr6 24697659 24697712 -157717530 - L2 LINE L2 -68 3204 3153 1561 96 45 0 chr6 24697813 24698033 -157717209 - MER30 DNA MER1_type 0 230 1 186 43 0 0 chr6 24698128 24698151 -157717091 + (TAA)n Simple_repeat Simple_repeat 1 23 0 1074 254 183 9 chr6 24698732 24699154 -157716088 + MLT2B2 LTR ERVL 1 495 -20 472 298 79 65 chr6 24699360 24699713 -157715529 + MER20B DNA MER1_type 4 361 -422 421 85 0 0 chr6 24699722 24699781 -157715461 + MADE1 DNA Mariner 22 80 0 994 273 75 13 chr6 24699788 24700176 -157715066 + MER20B DNA MER1_type 371 782 -1 407 303 146 43 chr6 24700197 24700547 -157714695 - L2 LINE L2 -743 2571 2186 201 379 45 15 chr6 24700606 24700738 -157714504 - MIR SINE MIR -72 190 55 1820 222 60 25 chr6 24700863 24701216 -157714026 + LTR40b LTR ERVL 1 375 -87 2930 93 25 16 chr6 24701216 24701656 -157713586 + MLT2A1 LTR ERVL 1 444 0 1820 222 60 25 chr6 24701656 24701748 -157713494 + LTR40b LTR ERVL 375 462 0 656 307 39 79 chr6 24701762 24702250 -157712992 - L2 LINE L2 -147 3166 2619 297 75 0 0 chr6 24702333 24702373 -157712869 + (TTA)n Simple_repeat Simple_repeat 1 40 0 264 365 22 17 chr6 24704369 24704547 -157710695 - L2 LINE L2 -1903 1411 1233 275 311 38 30 chr6 24704590 24704722 -157710520 + MARNA DNA Mariner 415 547 -39 418 209 304 20 chr6 24704750 24704951 -157710291 + L1MD2 LINE L1 6088 6345 -14 25 65 0 0 chr6 24705838 24705884 -157709358 + AT_rich Low_complexity Low_complexity 1 46 0 1554 258 185 19 chr6 24706219 24706972 -157708270 + L2 LINE L2 2194 3069 -244 1198 270 69 26 chr6 24707079 24707583 -157707659 + L1ME2 LINE L1 5578 6103 -61 22 35 0 0 chr6 24707773 24707802 -157707440 + AT_rich Low_complexity Low_complexity 1 29 0 371 308 50 66 chr6 24707806 24708124 -157707118 + L1ME LINE L1 2851 3163 -2983 2829 6 0 0 chr6 24708657 24708968 -157706274 - AluYb8 SINE Alu -7 311 1 378 318 67 30 chr6 24708968 24709267 -157705975 + L1ME LINE L1 3863 4172 -1974 245 309 37 6 chr6 24709304 24709466 -157705776 + L1ME LINE L1 4242 4408 -1738 22 0 0 0 chr6 24709669 24709691 -157705551 + AT_rich Low_complexity Low_complexity 1 22 0 338 294 154 33 chr6 24709780 24710079 -157705163 + L1ME LINE L1 5411 5745 -417 3696 194 6 30 chr6 24710746 24711486 -157703756 + L1MB8 LINE L1 5388 6109 -69 2266 105 0 0 chr6 24711486 24711780 -157703462 - AluSx SINE Alu -18 294 1 3696 194 6 30 chr6 24711780 24711843 -157703399 + L1MB8 LINE L1 6109 6172 -6 2139 85 0 14 chr6 24712472 24712754 -157702488 + AluY SINE Alu 23 300 -11 1424 176 62 38 chr6 24713371 24713661 -157701581 - AluJo SINE Alu -15 297 1 1325 90 6 0 chr6 24713731 24713908 -157701334 - AluY SINE Alu -1 310 133 2345 96 0 3 chr6 24713908 24714220 -157701022 - AluY SINE Alu 0 311 1 1758 299 136 23 chr6 24714246 24715390 -157699852 - L2 LINE L2 0 3313 2032 296 229 16 10 chr6 24715628 24715829 -157699413 + (TA)n Simple_repeat Simple_repeat 1 202 0 2243 91 3 0 chr6 24715845 24716130 -157699112 - AluSp SINE Alu -26 287 2 236 186 70 0 chr6 24716951 24717037 -157698205 + (TA)n Simple_repeat Simple_repeat 1 92 0 22 109 0 0 chr6 24717062 24717154 -157698088 + AT_rich Low_complexity Low_complexity 1 92 0 336 199 28 50 chr6 24717175 24717356 -157697886 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 2738 78 93 5 chr6 24718217 24718627 -157696615 + LTR7 LTR ERV1 3 448 -2 243 0 0 0 chr6 24718726 24718753 -157696489 + (A)n Simple_repeat Simple_repeat 1 27 0 2525 84 0 0 chr6 24719253 24719563 -157695679 - AluSg SINE Alu 0 310 1 1794 208 20 20 chr6 24719747 24720155 -157695087 + L1MB4 LINE L1 5631 6038 -142 600 202 69 12 chr6 24720782 24720955 -157694287 - MER5A DNA MER1_type -6 183 1 618 127 18 9 chr6 24721271 24721381 -157693861 + L1MB4 LINE L1 6021 6131 -49 2146 108 7 0 chr6 24722299 24722586 -157692656 + AluSq SINE Alu 1 289 -24 203 0 0 36 chr6 24722590 24722618 -157692624 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2173 113 3 13 chr6 24723081 24723392 -157691850 - AluSp SINE Alu -5 308 1 204 97 0 0 chr6 24723908 24723939 -157691303 + (TG)n Simple_repeat Simple_repeat 1 31 0 216 0 0 0 chr6 24724541 24724565 -157690677 + (TATG)n Simple_repeat Simple_repeat 2 25 0 272 331 15 46 chr6 24724567 24724697 -157690545 - L2 LINE L2 -4 3309 3184 1437 249 82 15 chr6 24724727 24725266 -157689976 - MLT2F LTR ERVL -14 649 35 570 214 174 0 chr6 24725304 24725482 -157689760 + L1ME3A LINE L1 5956 6164 -6 290 344 94 56 chr6 24725708 24726004 -157689238 - L2 LINE L2 -429 2885 2578 548 267 68 0 chr6 24726004 24726165 -157689077 + MIR SINE MIR 1 172 -90 431 280 98 53 chr6 24726604 24726829 -157688413 + L1MC4a LINE L1 5814 6048 -1760 516 366 48 5 chr6 24727284 24727658 -157687584 + L1MC4a LINE L1 6414 6803 -1005 352 144 122 22 chr6 24727669 24727759 -157687483 + L1ME2 LINE L1 5631 5729 -435 404 242 109 8 chr6 24727807 24727935 -157687307 - L1ME2 LINE L1 -274 5890 5750 732 264 43 4 chr6 24727984 24728215 -157687027 + L1ME2 LINE L1 5912 6151 -13 776 225 38 19 chr6 24728219 24728428 -157686814 + L1MC4a LINE L1 6345 6557 -1251 627 312 78 12 chr6 24728602 24729151 -157686091 + MLT2F LTR ERVL 30 661 -2 279 310 39 32 chr6 24729152 24729307 -157685935 + HERVL-F LTR ERVL 4 159 -5495 1620 173 15 7 chr6 24729324 24729627 -157685615 - AluJo SINE Alu 0 313 9 426 344 70 36 chr6 24729698 24730056 -157685186 + HERVL-F LTR ERVL 282 651 -5113 1354 330 19 29 chr6 24730077 24730723 -157684519 + HERVL-F LTR ERVL 778 1416 -4348 2958 260 44 17 chr6 24730731 24730839 -157684403 + HERVL-F LTR ERVL 1624 1728 -4036 2164 176 102 11 chr6 24730839 24731300 -157683942 + MLT1D LTR MaLR 3 505 0 2958 260 44 17 chr6 24731300 24732123 -157683119 + HERVL-F LTR ERVL 1728 2622 -3142 800 323 170 16 chr6 24732126 24732684 -157682558 + MLT2F LTR ERVL 14 657 -6 414 0 0 0 chr6 24732685 24732731 -157682511 + (TG)n Simple_repeat Simple_repeat 1 46 0 3413 231 117 12 chr6 24732732 24733934 -157681308 + L1MC4 LINE L1 6618 8036 -6 1253 274 154 20 chr6 24733962 24734463 -157680779 - MLT1G1 LTR MaLR -27 568 1 942 90 0 0 chr6 24734493 24734627 -157680615 + (GGGA)n Simple_repeat Simple_repeat 4 137 0 337 315 45 48 chr6 24734887 24735265 -157679977 + L1MC4 LINE L1 7098 7474 -568 510 92 0 13 chr6 24736044 24736056 -157679186 + LTR3b LTR ERVK 426 437 -63 2006 153 36 59 chr6 24736056 24736220 -157679022 + LTR3 LTR ERVK 1 167 -262 2215 113 3 0 chr6 24736220 24736521 -157678721 - AluSp SINE Alu -11 302 1 2006 153 36 59 chr6 24736521 24736795 -157678447 + LTR3 LTR ERVK 167 429 0 510 92 0 13 chr6 24736795 24736858 -157678384 + LTR3b LTR ERVK 437 500 0 303 300 0 0 chr6 24736858 24736938 -157678304 - L2 LINE L2 -948 2366 2287 246 62 0 0 chr6 24736938 24736970 -157678272 + (TAA)n Simple_repeat Simple_repeat 3 34 0 325 280 189 29 chr6 24737514 24737689 -157677553 - MIR SINE MIR -13 249 47 201 163 0 0 chr6 24738614 24738663 -157676579 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 33 33 0 chr6 24740627 24740657 -157674585 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr6 24741413 24741435 -157673807 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr6 24741669 24741692 -157673550 + (TG)n Simple_repeat Simple_repeat 2 24 0 252 208 0 39 chr6 24741797 24741874 -157673368 - L1M LINE L1 -745 5429 5356 266 241 52 0 chr6 24741909 24741967 -157673275 - L2 LINE L2 -68 3245 3185 21 57 0 0 chr6 24742001 24742036 -157673206 + AT_rich Low_complexity Low_complexity 1 35 0 2867 9 0 6 chr6 24742170 24742490 -157672752 - AluYb8 SINE Alu 0 318 1 2124 196 70 29 chr6 24745782 24746328 -157668914 + L1MC3 LINE L1 6672 7239 -546 635 192 20 0 chr6 24746331 24746477 -157668765 - L1MC3 LINE L1 -188 7597 7449 2689 107 0 3 chr6 24747109 24747474 -157667768 + THE1B LTR MaLR 1 364 0 22 80 0 0 chr6 24747478 24747528 -157667714 + AT_rich Low_complexity Low_complexity 1 50 0 43264 42 4 8 chr6 24747583 24749445 -157665797 + L1PA4 LINE L1 4 1872 -4283 3304 71 5 12 chr6 24749445 24749869 -157665373 - SVA Other Other -1 1385 965 43264 42 4 8 chr6 24749869 24754180 -157661062 + L1PA4 LINE L1 1872 6150 -5 429 119 0 0 chr6 24754180 24754247 -157660995 + AluS SINE Alu 230 296 -13 509 282 26 6 chr6 24855324 24855480 -157559762 - MIR SINE MIR -102 160 2 1687 221 91 31 chr6 24856568 24857051 -157558191 - MER21B LTR ERV1 -31 832 321 288 296 62 0 chr6 24857157 24857238 -157558004 + L1M4 LINE L1 2677 2762 -3384 224 286 11 0 chr6 24857256 24857347 -157557895 + (TA)n Simple_repeat Simple_repeat 2 93 0 337 277 75 21 chr6 24857373 24857561 -157557681 + L2 LINE L2 3116 3313 0 2039 126 43 98 chr6 24857797 24858194 -157557048 - THE1C LTR MaLR 0 375 1 216 156 44 0 chr6 24859540 24859585 -157555657 + T-rich Low_complexity Low_complexity 3 49 0 6314 77 3 73 chr6 24860153 24861041 -157554201 + LTR12 LTR ERV1 1 826 0 2282 103 0 0 chr6 24861613 24861904 -157553338 - AluY SINE Alu -20 291 1 229 229 69 84 chr6 24862007 24862138 -157553104 - MIR SINE MIR -10 252 124 23 0 0 0 chr6 24864561 24864584 -157550658 + AT_rich Low_complexity Low_complexity 1 23 0 2868 10 0 0 chr6 24864886 24865197 -157550045 - AluY SINE Alu 0 311 1 3275 136 6 11 chr6 24865224 24865752 -157549490 + MER61E LTR ERV1 1 525 -44 204 284 45 15 chr6 24865957 24866024 -157549218 - MIR3 SINE MIR -43 165 97 260 283 85 69 chr6 24866332 24866579 -157548663 + L3b LINE CR1 1129 1379 -204 1491 206 75 51 chr6 24867437 24867928 -157547314 - MLT1D LTR MaLR -2 503 1 183 156 0 0 chr6 24867964 24867996 -157547246 + (CA)n Simple_repeat Simple_repeat 1 32 0 210 143 0 0 chr6 24870890 24870925 -157544317 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr6 24871021 24871049 -157544193 + AT_rich Low_complexity Low_complexity 1 28 0 288 239 125 0 chr6 24871077 24871165 -157544077 - MIR SINE MIR -111 151 53 839 136 14 0 chr6 24872739 24872886 -157542356 + L1MA2 LINE L1 6128 6276 -28 21 0 0 0 chr6 24872928 24872949 -157542293 + AT_rich Low_complexity Low_complexity 1 21 0 1840 291 55 45 chr6 24874380 24875241 -157540001 - L2 LINE L2 -2439 875 7 191 103 26 0 chr6 24876554 24876593 -157538649 + A-rich Low_complexity Low_complexity 2 41 0 207 100 0 0 chr6 24876917 24876947 -157538295 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 447 298 13 32 chr6 24876947 24877094 -157538148 - L2 LINE L2 -13 3300 3155 369 312 123 78 chr6 24877217 24877337 -157537905 - L2 LINE L2 -351 2963 2850 982 184 47 119 chr6 24877337 24877740 -157537502 + MLT1A2 LTR MaLR 1 374 0 369 312 123 78 chr6 24877740 24878429 -157536813 - L2 LINE L2 -464 2850 2117 345 47 0 0 chr6 24878491 24878534 -157536708 + (CA)n Simple_repeat Simple_repeat 1 43 0 205 312 54 107 chr6 24879204 24879521 -157535721 + L2 LINE L2 2920 3219 -53 2347 101 23 49 chr6 24879559 24879944 -157535298 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr6 24880096 24880118 -157535124 + AT_rich Low_complexity Low_complexity 1 22 0 376 305 88 62 chr6 24880132 24880486 -157534756 - L2 LINE L2 -1 3312 2950 293 320 63 93 chr6 24880681 24881109 -157534133 - L2 LINE L2 -38 3234 2820 522 321 50 23 chr6 24882657 24882878 -157532364 + MIR SINE MIR 33 259 -3 846 153 0 0 chr6 24884046 24884177 -157531065 - FLAM_A SINE Alu -2 131 1 180 0 0 0 chr6 24885978 24885998 -157529244 + (A)n Simple_repeat Simple_repeat 1 20 0 250 314 14 0 chr6 24885999 24886069 -157529173 - L2 LINE L2 -9 3304 3234 205 246 261 0 chr6 24886106 24886175 -157529067 - L2 LINE L2 -39 3274 3188 2263 91 0 58 chr6 24887066 24887396 -157527846 + AluY SINE Alu 1 311 0 555 307 83 32 chr6 24887654 24887872 -157527370 + MIR SINE MIR 8 236 -26 3003 114 14 0 chr6 24887891 24888337 -157526905 + L1PA15 LINE L1 5708 6159 -6 890 146 8 0 chr6 24888593 24888723 -157526519 - FLAM_C SINE Alu -12 131 1 796 219 61 35 chr6 24889779 24890007 -157525235 + MLT1F1 LTR MaLR 1 234 -333 1447 260 81 35 chr6 24890167 24890733 -157524509 + MLT1E LTR MaLR 1 592 -1 794 196 6 37 chr6 24890736 24890899 -157524343 + MLT1F1 LTR MaLR 307 464 -103 1321 243 31 52 chr6 24890923 24891405 -157523837 + MER74B LTR ERVL 81 552 -70 1631 90 5 31 chr6 24891446 24891669 -157523573 + AluY SINE Alu 82 298 -13 449 196 18 27 chr6 24891691 24891803 -157523439 + MLT1F1 LTR MaLR 457 567 0 355 336 0 15 chr6 24891886 24892020 -157523222 + MIR SINE MIR 20 151 -111 22 35 0 0 chr6 24892818 24892847 -157522395 + AT_rich Low_complexity Low_complexity 1 29 0 2064 263 80 5 chr6 24892922 24893745 -157521497 - L1M4 LINE L1 -1010 5136 4252 2367 102 30 19 chr6 24895134 24895505 -157519737 - THE1C LTR MaLR 0 375 1 256 327 129 0 chr6 24898294 24898395 -157516847 + MIR SINE MIR 51 164 -98 1205 278 50 45 chr6 24898461 24899121 -157516121 + L2 LINE L2 2657 3311 -2 1696 165 49 19 chr6 24900145 24900778 -157514464 - MER44D DNA MER2_type -2 603 1 196 324 124 29 chr6 24900904 24901009 -157514233 - L2 LINE L2 -22 3250 3136 2474 85 0 0 chr6 24901098 24901404 -157513838 + AluSc SINE Alu 1 306 -3 387 300 131 8 chr6 24902009 24902139 -157513103 + L2 LINE L2 3168 3313 0 266 333 19 19 chr6 24902667 24902772 -157512470 + L2 LINE L2 3168 3272 0 1876 206 31 53 chr6 24903882 24904393 -157510849 - MLT1F LTR MaLR 0 542 43 729 213 49 0 chr6 24904507 24904671 -157510571 + MLT2B1 LTR ERVL 1 172 -348 22 0 0 0 chr6 24906044 24906066 -157509176 + AT_rich Low_complexity Low_complexity 1 22 0 1720 147 23 0 chr6 24906159 24906418 -157508824 + AluSx SINE Alu 12 276 -36 182 219 0 0 chr6 24906778 24906819 -157508423 - MIR SINE MIR -110 152 112 1985 201 158 58 chr6 24907220 24907965 -157507277 + LTR1B LTR ERV1 1 820 -6 251 346 78 20 chr6 24908820 24908973 -157506269 + L2 LINE L2 3101 3262 -10 212 100 25 0 chr6 24911432 24911472 -157503770 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 299 315 27 36 chr6 24911668 24911779 -157503463 - L2 LINE L2 -18 3254 3145 321 380 76 9 chr6 24911833 24912057 -157503185 - L2 LINE L2 -339 2975 2737 2385 83 0 7 chr6 24912503 24912803 -157502439 + AluSc SINE Alu 1 298 -11 303 326 46 29 chr6 24913914 24914089 -157501153 + L3 LINE CR1 1195 1372 -205 2992 174 20 43 chr6 24916964 24917162 -157498080 - L1 LINE L1 -1346 4800 4599 2535 64 0 3 chr6 24917162 24917474 -157497768 - AluY SINE Alu 0 311 1 2992 174 20 43 chr6 24917474 24917974 -157497268 - L1 LINE L1 -1547 4599 4118 201 333 0 0 chr6 24918462 24918522 -157496720 - L2 LINE L2 -4 3309 3250 221 220 20 0 chr6 24918686 24918736 -157496506 + (TA)n Simple_repeat Simple_repeat 1 51 0 872 71 31 8 chr6 24919936 24920063 -157495179 - L1PA7 LINE L1 -2 6152 6023 1794 146 21 41 chr6 24920530 24920879 -157494363 + MLT1B LTR MaLR 1 344 -52 275 105 0 35 chr6 24920883 24920940 -157494302 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 349 75 88 19 chr6 24920948 24921108 -157494134 + (TA)n Simple_repeat Simple_repeat 2 172 0 298 36 72 66 chr6 24921121 24921288 -157493954 + (TA)n Simple_repeat Simple_repeat 2 169 0 389 109 44 77 chr6 24921289 24921545 -157493697 + (CTATA)n Simple_repeat Simple_repeat 1 247 0 43373 44 4 0 chr6 24923728 24929857 -157485385 - L1PA4 LINE L1 -6 6149 3 21 0 0 0 chr6 24929873 24929894 -157485348 + AT_rich Low_complexity Low_complexity 1 21 0 451 253 172 0 chr6 24930377 24930551 -157484691 - MLT1J1 LTR MaLR -234 212 9 293 68 23 0 chr6 24930686 24930730 -157484512 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 201 315 14 0 chr6 24930863 24930936 -157484306 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 1238 131 10 0 chr6 24930973 24931171 -157484071 + MER2 DNA MER2_type 1 200 -145 247 225 0 99 chr6 24931214 24931285 -157483957 + MER2 DNA MER2_type 278 341 -4 2047 300 40 36 chr6 24931357 24932485 -157482757 + L2 LINE L2 2175 3309 -4 207 194 0 0 chr6 24934174 24934210 -157481032 + MIR SINE MIR 156 191 -71 1955 125 21 0 chr6 24934273 24934552 -157480690 + AluSx SINE Alu 1 285 -27 355 353 15 8 chr6 24934686 24934819 -157480423 - L3 LINE CR1 -54 1523 1390 462 314 71 16 chr6 24934879 24935131 -157480111 + L2 LINE L2 1839 2104 -1210 27 49 0 0 chr6 24935305 24935346 -157479896 + AT_rich Low_complexity Low_complexity 1 41 0 378 310 39 47 chr6 24936846 24937101 -157478141 - L1MC4 LINE L1 -1 8041 7789 2265 103 0 38 chr6 24937164 24937484 -157477758 - AluSg SINE Alu -2 308 1 24 0 0 0 chr6 24937492 24937516 -157477726 + AT_rich Low_complexity Low_complexity 1 24 0 671 236 82 55 chr6 24937520 24937850 -157477392 - L1MC4 LINE L1 -491 7551 7213 1424 157 49 66 chr6 24937884 24938170 -157477072 + AluJo SINE Alu 2 282 -30 354 98 0 0 chr6 24938177 24938228 -157477014 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 25 31 0 0 chr6 24938258 24938290 -157476952 + AT_rich Low_complexity Low_complexity 1 32 0 1987 152 3 0 chr6 24939629 24939926 -157475316 + AluSx SINE Alu 1 298 -14 5678 129 22 8 chr6 24939945 24941813 -157473429 - L1PA16 LINE L1 -9 6157 4270 1082 258 119 76 chr6 24944710 24945275 -157469967 - MLT1G1 LTR MaLR -2 593 5 218 203 14 95 chr6 24945279 24945353 -157469889 - MIR SINE MIR -130 132 65 3222 82 30 7 chr6 24945422 24945862 -157469380 + MLT2A2 LTR ERVL 2 451 -2 1785 234 98 57 chr6 24946952 24947731 -157467511 - L1ME2 LINE L1 -19 6145 5335 1309 229 45 63 chr6 24947731 24948296 -157466946 - MLT1D LTR MaLR -1 496 1 1018 266 96 24 chr6 24948337 24948964 -157466278 - L1ME2 LINE L1 -985 5161 4490 * 1088 262 27 40 chr6 24948961 24949438 -157465804 - L1ME2 LINE L1 -2060 4086 3616 349 248 73 41 chr6 24949470 24949688 -157465554 - L1ME2 LINE L1 -3069 3077 2853 426 180 174 23 chr6 24949817 24949989 -157465253 - MER33 DNA MER1_type -115 209 12 1173 65 0 0 chr6 24950283 24950436 -157464806 - AluY SINE Alu -5 306 154 2142 166 35 39 chr6 24951246 24951443 -157463799 + Tigger2a DNA MER2_type 2 198 -2510 1660 162 32 23 chr6 24951443 24951752 -157463490 - AluJb SINE Alu 0 312 1 2142 166 35 39 chr6 24951752 24951989 -157463253 + Tigger2a DNA MER2_type 198 434 0 193 244 81 70 chr6 24952096 24952261 -157462981 + MIR SINE MIR 45 212 -50 23 0 0 0 chr6 24952529 24952552 -157462690 + AT_rich Low_complexity Low_complexity 1 23 0 183 235 0 0 chr6 24952561 24952612 -157462630 + (TA)n Simple_repeat Simple_repeat 2 52 0 250 214 24 0 chr6 24953747 24953831 -157461411 + (TA)n Simple_repeat Simple_repeat 1 86 0 686 309 44 12 chr6 24954378 24954630 -157460612 - MIR SINE MIR 0 262 3 301 322 46 0 chr6 24955045 24955132 -157460110 + L2 LINE L2 3170 3260 -12 217 0 61 0 chr6 24955255 24955288 -157459954 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1704 150 28 7 chr6 24955296 24955582 -157459660 + AluJb SINE Alu 1 292 -20 1334 258 99 15 chr6 24956901 24957367 -157457875 + MLT1D LTR MaLR 1 505 0 183 80 0 0 chr6 24957508 24957533 -157457709 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr6 24957972 24957996 -157457246 + AT_rich Low_complexity Low_complexity 1 24 0 1109 208 21 0 chr6 24958060 24958301 -157456941 - Tigger6a DNA MER2_type 0 1083 838 623 208 0 0 chr6 24958309 24958429 -157456813 + AluJo SINE Alu 1 120 -192 603 169 25 33 chr6 24958429 24958882 -157456360 + GA-rich Low_complexity Low_complexity 1 449 0 664 218 170 0 chr6 24958883 24959030 -157456212 + AluJo SINE Alu 129 300 -12 3372 213 24 37 chr6 24959034 24959878 -157455364 - Tigger6a DNA MER2_type -250 833 1 22 0 0 0 chr6 24960800 24960822 -157454420 + AT_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr6 24961057 24961123 -157454119 + AT_rich Low_complexity Low_complexity 1 66 0 401 144 11 22 chr6 24961140 24961230 -157454012 - L1MA6 LINE L1 -5 6295 6207 289 339 85 21 chr6 24962124 24962360 -157452882 - MIR SINE MIR 0 262 12 1031 153 23 0 chr6 24963575 24963751 -157451491 - L1MB1 LINE L1 -330 5838 5659 692 158 0 0 chr6 24963753 24963867 -157451375 + L1MB1 LINE L1 5816 5929 -239 2251 124 14 6 chr6 24963881 24964245 -157450997 - L1PB1 LINE L1 -1 6150 5784 275 284 23 0 chr6 24964284 24964372 -157450870 + L1MC4 LINE L1 6614 6703 -1339 254 274 21 0 chr6 24964337 24964432 -157450810 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 * 244 260 0 62 chr6 24964394 24964490 -157450752 + L1MC4 LINE L1 6614 6703 -1339 * 279 250 0 22 chr6 24964442 24964534 -157450708 - L1MC4 LINE L1 -1339 6703 6614 245 301 24 0 chr6 24964509 24964592 -157450650 + L1MC4 LINE L1 6617 6701 -1341 * 252 297 0 22 chr6 24964561 24964652 -157450590 - L1MC4 LINE L1 -1340 6702 6614 2141 100 0 7 chr6 24964667 24964968 -157450274 - L1P5 LINE L1 -360 5791 5491 1296 176 4 0 chr6 24964968 24965205 -157450037 + L1MB1 LINE L1 5926 6165 -3 221 163 0 0 chr6 24965320 24965363 -157449879 + A-rich Low_complexity Low_complexity 1 43 0 29 47 0 0 chr6 24965639 24965682 -157449560 + AT_rich Low_complexity Low_complexity 1 43 0 364 276 110 7 chr6 24967493 24967638 -157447604 - L2 LINE L2 0 3313 3154 25 51 0 0 chr6 24969041 24969080 -157446162 + AT_rich Low_complexity Low_complexity 1 39 0 2182 107 19 16 chr6 24970160 24970469 -157444773 + AluSx SINE Alu 1 310 -2 273 171 61 12 chr6 24971225 24971307 -157443935 - L1ME4a LINE L1 -13 6108 6023 333 68 0 0 chr6 24971333 24971377 -157443865 + (TG)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr6 24971609 24971629 -157443613 + (TG)n Simple_repeat Simple_repeat 1 20 0 237 108 0 0 chr6 24971634 24971671 -157443571 + (GA)n Simple_repeat Simple_repeat 1 37 0 201 302 0 0 chr6 24973415 24973468 -157441774 + CT-rich Low_complexity Low_complexity 2 54 0 300 394 28 6 chr6 24973930 24974110 -157441132 + MIR3 SINE MIR 4 187 -21 2421 54 0 7 chr6 24974600 24974894 -157440348 - AluY SINE Alu -19 292 1 207 228 18 18 chr6 24975220 24975277 -157439965 + CT-rich Low_complexity Low_complexity 5 61 0 1942 98 4 23 chr6 24975841 24976106 -157439136 + AluSq SINE Alu 1 260 -53 2206 66 16 53 chr6 24976344 24976664 -157438578 - AluSc SINE Alu -1 308 1 1965 119 63 0 chr6 24976874 24977160 -157438082 - AluSq SINE Alu -9 304 1 217 154 26 0 chr6 24978097 24978136 -157437106 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 227 193 147 55 chr6 24978144 24978253 -157436989 - MIR SINE MIR -93 169 51 302 346 49 25 chr6 24978311 24978473 -157436769 + L2 LINE L2 3106 3271 -1 1843 129 48 7 chr6 24979418 24979713 -157435529 + AluSx SINE Alu 1 307 -5 339 150 0 0 chr6 24979713 24979773 -157435469 + (GGGA)n Simple_repeat Simple_repeat 3 62 0 186 133 0 0 chr6 24979773 24979803 -157435439 + (A)n Simple_repeat Simple_repeat 1 30 0 287 273 78 0 chr6 24979840 24979917 -157435325 + MER58 DNA MER1_type 1 83 -2337 290 255 144 80 chr6 24980044 24980232 -157435010 - MER58C DNA MER1_type -15 200 1 283 246 12 114 chr6 24980268 24980435 -157434807 + MLT1J1 LTR MaLR 297 446 0 1612 306 113 7 chr6 24980435 24981151 -157434091 - L2 LINE L2 -249 3064 2258 23 33 0 0 chr6 24981324 24981354 -157433888 + AT_rich Low_complexity Low_complexity 1 30 0 720 310 76 17 chr6 24982715 24983137 -157432105 - LTR16A LTR ERVL -2 448 2 252 292 193 12 chr6 24983208 24983379 -157431863 - MIR SINE MIR -29 233 32 24 32 0 0 chr6 24983777 24983808 -157431434 + AT_rich Low_complexity Low_complexity 1 31 0 51 42 0 0 chr6 24983958 24984030 -157431212 + AT_rich Low_complexity Low_complexity 1 72 0 6437 189 22 9 chr6 24984313 24984404 -157430838 + L1PA16 LINE L1 2 90 -6759 2215 127 0 0 chr6 24984404 24984703 -157430539 - AluSx SINE Alu -13 299 1 6437 189 22 9 chr6 24984703 24986605 -157428637 + L1PA16 LINE L1 90 1677 -5172 8444 200 31 22 chr6 24986611 24987217 -157428025 + L1PA16 LINE L1 3534 4133 -2736 2213 140 31 0 chr6 24987217 24987568 -157427674 - THE1B LTR MaLR 0 364 3 8444 200 31 22 chr6 24987568 24989546 -157425696 + L1PA16 LINE L1 4133 6169 -700 1461 190 20 27 chr6 24989546 24989876 -157425366 + AluSx SINE Alu 1 312 0 8444 200 31 22 chr6 24989876 24990583 -157424659 + L1PA16 LINE L1 6169 6868 -1 240 335 40 29 chr6 24991280 24991453 -157423789 - L3b LINE CR1 -232 1351 1177 29227 100 11 45 chr6 24991453 24994338 -157420904 - L1PA8 LINE L1 0 6487 3503 427 48 32 0 chr6 24994338 24994400 -157420842 - AluY SINE Alu -6 305 242 29227 100 11 45 chr6 24994400 24997653 -157417589 - L1PA8 LINE L1 -2984 3503 371 882 268 92 42 chr6 25000799 25001179 -157414063 - L3b LINE CR1 -81 1502 1104 1531 303 48 35 chr6 25002168 25003039 -157412203 - L2 LINE L2 0 3313 2416 1607 254 72 59 chr6 25003093 25004254 -157410988 - L1 LINE L1 -1329 4817 3552 417 252 50 64 chr6 25004418 25004636 -157410606 - L1M4 LINE L1 -2006 4140 3926 561 260 77 0 chr6 25004781 25004962 -157410280 + MER58A DNA MER1_type 1 195 -29 319 329 64 66 chr6 25005044 25005301 -157409941 + L2 LINE L2 2757 3010 -303 216 0 0 0 chr6 25005302 25005326 -157409916 + (T)n Simple_repeat Simple_repeat 1 24 0 2121 113 27 3 chr6 25005842 25006142 -157409100 + AluSx SINE Alu 1 307 -5 185 248 50 91 chr6 25007404 25007525 -157407717 + L2 LINE L2 2560 2675 -639 205 247 41 14 chr6 25007680 25007753 -157407489 + (CATA)n Simple_repeat Simple_repeat 2 76 0 202 303 0 34 chr6 25007875 25007964 -157407278 + (CCCCAA)n Simple_repeat Simple_repeat 2 87 0 451 323 35 39 chr6 25008510 25008739 -157406503 - MIR SINE MIR -17 245 18 23 0 0 0 chr6 25008802 25008825 -157406417 + AT_rich Low_complexity Low_complexity 1 23 0 749 217 16 21 chr6 25009434 25009623 -157405619 - MER97c DNA MER1_type? -902 188 1 189 333 109 68 chr6 25011585 25011777 -157403465 + L3b LINE CR1 1367 1566 -17 245 29 29 0 chr6 25011973 25012007 -157403235 + (TA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 25012485 25012505 -157402737 + (A)n Simple_repeat Simple_repeat 1 20 0 1021 140 0 31 chr6 25013887 25014102 -157401140 + MLT1C LTR MaLR 197 462 -5 342 0 0 0 chr6 25014685 25014723 -157400519 + (TG)n Simple_repeat Simple_repeat 2 39 0 265 326 30 59 chr6 25014840 25014975 -157400267 + MIR SINE MIR 51 181 -81 207 0 0 0 chr6 25015294 25015317 -157399925 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 258 32 0 0 chr6 25015653 25015684 -157399558 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 2094 112 7 0 chr6 25015684 25015962 -157399280 - AluSx SINE Alu -32 280 1 216 0 0 0 chr6 25016197 25016221 -157399021 + (T)n Simple_repeat Simple_repeat 1 24 0 799 289 125 49 chr6 25016811 25017665 -157397577 + L2 LINE L2 2347 3251 -62 1789 170 0 3 chr6 25019970 25020259 -157394983 - AluJb SINE Alu -24 288 1 1940 191 45 16 chr6 25023333 25023774 -157391468 - L1 LINE L1 -1592 4554 4101 621 213 0 39 chr6 25023778 25023933 -157391309 - L1 LINE L1 -2133 4013 3865 213 260 65 98 chr6 25024772 25024895 -157390347 - MIR3 SINE MIR -26 182 64 1181 305 11 44 chr6 25024910 25025431 -157389811 + L1MC3 LINE L1 3 506 -5539 474 280 13 27 chr6 25025537 25025687 -157389555 + L1MC3 LINE L1 570 717 -5328 7678 241 65 21 chr6 25025697 25029140 -157386102 + L1MC3 LINE L1 2949 5821 -743 2857 179 67 123 chr6 25029139 25030192 -157385050 + L1MC3 LINE L1 7162 8155 -48 * 186 43 0 0 chr6 25031621 25031644 -157383598 + (GAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 25032384 25032405 -157382837 + AT_rich Low_complexity Low_complexity 1 21 0 232 353 44 73 chr6 25033540 25033676 -157381566 + MIR SINE MIR 20 151 -111 676 283 49 83 chr6 25035434 25035844 -157379398 + L2 LINE L2 2817 3212 -101 2315 264 50 14 chr6 25035849 25036096 -157379146 + L1M4 LINE L1 3038 3274 -2872 840 10 0 0 chr6 25036096 25036194 -157379048 + L1PA2 LINE L1 6058 6155 0 2315 264 50 14 chr6 25036194 25036817 -157378425 + L1M4 LINE L1 3274 3940 -2206 183 204 0 0 chr6 25036864 25036913 -157378329 + (AGTTG)n Simple_repeat Simple_repeat 5 53 0 2171 91 0 7 chr6 25037032 25037345 -157377897 - AluSq SINE Alu 0 314 4 249 139 28 14 chr6 25037537 25037609 -157377633 + (TA)n Simple_repeat Simple_repeat 2 74 0 839 241 18 5 chr6 25037616 25037840 -157377402 + L1M4 LINE L1 3964 4190 -1956 1123 306 46 22 chr6 25037853 25038497 -157376745 + L1MCb LINE L1 1476 2179 -4566 470 296 82 10 chr6 25038893 25039089 -157376153 - MLT1J1 LTR MaLR -13 433 224 256 213 16 0 chr6 25040092 25040153 -157375089 + (AATTG)n Simple_repeat Simple_repeat 4 65 0 190 231 88 55 chr6 25040686 25040777 -157374465 - MIR SINE MIR -5 257 164 1965 137 26 11 chr6 25040805 25041155 -157374087 + L1MA2 LINE L1 5942 6296 -8 1608 206 29 29 chr6 25041822 25042196 -157373046 + MLT1A2 LTR MaLR 1 374 0 439 280 68 39 chr6 25042449 25042728 -157372514 + MER96B DNA MER1_type? 131 417 0 644 264 77 40 chr6 25042827 25043126 -157372116 + L1M4 LINE L1 3528 3837 -2309 420 260 0 10 chr6 25043127 25043227 -157372015 + MLT1C LTR MaLR 369 467 0 3067 221 99 90 chr6 25043232 25044425 -157370817 + L1MC4a LINE L1 6604 7807 -1 283 312 0 11 chr6 25044530 25044623 -157370619 + CT-rich Low_complexity Low_complexity 4 95 0 903 131 0 0 chr6 25045237 25045367 -157369875 + AluJb SINE Alu 4 133 -179 831 201 6 17 chr6 25045402 25045576 -157369666 + AluJb SINE Alu 126 297 -15 220 286 57 38 chr6 25046292 25046397 -157368845 + L2 LINE L2 1843 1949 -1365 1352 243 30 35 chr6 25046562 25046966 -157368276 - MER74B LTR ERVL -10 612 211 328 170 0 0 chr6 25047005 25047058 -157368184 - MER74B LTR ERVL -569 53 1 285 395 32 16 chr6 25047149 25047402 -157367840 + L2 LINE L2 2292 2548 -766 233 29 0 29 chr6 25047695 25047730 -157367512 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 242 242 116 42 chr6 25047994 25048089 -157367153 + L2 LINE L2 3160 3261 -11 25 31 0 0 chr6 25049194 25049226 -157366016 + AT_rich Low_complexity Low_complexity 1 32 0 286 298 100 29 chr6 25049700 25050009 -157365233 + L1ME4a LINE L1 5578 5908 -213 3045 174 92 6 chr6 25050638 25050727 -157364515 + L1MB3 LINE L1 5476 5556 -627 2177 60 0 0 chr6 25050727 25050993 -157364249 + AluY SINE Alu 34 299 -12 3045 174 92 6 chr6 25050993 25051553 -157363689 + L1MB3 LINE L1 5556 6181 -2 269 302 108 52 chr6 25052027 25052239 -157363003 + MIR SINE MIR 8 231 -31 360 313 102 36 chr6 25052720 25052886 -157362356 + MIR3 SINE MIR 3 179 -29 493 287 52 11 chr6 25054038 25054212 -157361030 + MIR SINE MIR 11 191 -71 871 287 60 81 chr6 25054599 25055265 -157359977 + HAL1 LINE L1 622 1273 -1234 288 252 97 32 chr6 25055282 25055437 -157359805 + HAL1 LINE L1 1386 1550 -957 368 296 19 58 chr6 25055444 25055650 -157359592 + HAL1 LINE L1 1682 1879 -628 356 367 105 0 chr6 25055680 25055909 -157359333 + HAL1 LINE L1 1664 1916 -591 1031 277 178 30 chr6 25055986 25056758 -157358484 + HAL1b LINE L1 427 1312 -36 1583 113 0 0 chr6 25057056 25057268 -157357974 - AluSq SINE Alu -9 304 93 521 324 39 0 chr6 25058044 25058226 -157357016 + MIR SINE MIR 11 199 -63 245 347 32 40 chr6 25058413 25058537 -157356705 + MIR SINE MIR 19 141 -67 832 255 24 19 chr6 25060085 25060293 -157354949 - MER3 DNA MER1_type 0 209 1 1839 187 59 36 chr6 25060380 25060818 -157354424 + MLT1C LTR MaLR 5 452 -15 429 242 58 74 chr6 25060872 25061062 -157354180 - LTR33A LTR ERVL -52 471 285 457 282 132 38 chr6 25061910 25062123 -157353119 + MIR SINE MIR 13 245 -17 321 336 36 7 chr6 25062324 25062461 -157352781 - MIR SINE MIR -31 231 91 554 345 43 13 chr6 25062464 25062699 -157352543 + MIR SINE MIR 21 262 0 235 211 178 22 chr6 25062769 25062859 -157352383 - HSMAR2 DNA Mariner -573 729 626 246 284 134 0 chr6 25062859 25062926 -157352316 + L2 LINE L2 3170 3245 -27 359 310 62 0 chr6 25063573 25063686 -157351556 - MER94 DNA DNA -14 120 1 22 56 0 0 chr6 25064327 25064363 -157350879 + AT_rich Low_complexity Low_complexity 1 36 0 840 288 91 42 chr6 25065352 25065738 -157349504 + MLT1L LTR MaLR 1 405 -210 485 322 91 21 chr6 25065865 25066107 -157349135 + L2 LINE L2 2719 2977 -337 12931 141 53 43 chr6 25066235 25068384 -157346858 - Tigger1 DNA MER2_type -3 2415 238 1723 153 84 0 chr6 25068384 25068659 -157346583 + AluSq SINE Alu 1 298 -15 12931 141 53 43 chr6 25068659 25068875 -157346367 - Tigger1 DNA MER2_type -2180 238 26 326 230 119 48 chr6 25068915 25069041 -157346201 + L2 LINE L2 3179 3313 0 21 0 0 0 chr6 25069319 25069340 -157345902 + AT_rich Low_complexity Low_complexity 1 21 0 399 277 80 49 chr6 25071564 25071769 -157343473 - MIR SINE MIR -52 210 1 182 402 24 12 chr6 25071785 25071949 -157343293 - L2 LINE L2 -221 3051 2886 328 383 74 0 chr6 25072099 25072274 -157342968 - MIR SINE MIR -13 249 62 1713 52 0 0 chr6 25072476 25072687 -157342555 + L1PA3 LINE L1 5945 6155 0 3225 34 0 0 chr6 25072688 25073071 -157342171 + L1PA3 LINE L1 5770 6152 -3 2247 114 10 0 chr6 25073100 25073407 -157341835 + AluSp SINE Alu 3 312 -1 1076 217 26 92 chr6 25074181 25074572 -157340670 + MLT1A1 LTR MaLR 1 365 0 270 104 75 0 chr6 25075316 25075383 -157339859 + (TTATA)n Simple_repeat Simple_repeat 1 72 0 214 406 23 8 chr6 25075931 25076064 -157339178 + MIR SINE MIR 7 141 -121 496 357 61 54 chr6 25076199 25076712 -157338530 + L2 LINE L2 2746 3260 -12 180 0 0 0 chr6 25077035 25077055 -157338187 + (TG)n Simple_repeat Simple_repeat 2 21 0 1122 166 9 36 chr6 25077690 25077913 -157337329 + AluJb SINE Alu 86 302 -10 250 231 13 26 chr6 25078191 25078269 -157336973 + (CTA)n Simple_repeat Simple_repeat 1 77 0 341 93 19 0 chr6 25078309 25078363 -157336879 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 393 22 0 0 chr6 25078373 25078419 -157336823 + (TG)n Simple_repeat Simple_repeat 2 47 0 397 307 118 49 chr6 25078824 25079231 -157336011 + L1ME LINE L1 4799 5233 -913 330 271 157 65 chr6 25079375 25079758 -157335484 + L1ME LINE L1 5309 5727 -394 2615 141 70 2 chr6 25079833 25080287 -157334955 + MER31A LTR ERV1 1 485 0 23 0 0 0 chr6 25080846 25080869 -157334373 + AT_rich Low_complexity Low_complexity 1 23 0 284 306 159 14 chr6 25081471 25081617 -157333625 - MIR SINE MIR -61 147 33 481 328 97 41 chr6 25081833 25082318 -157332924 - L1ME4a LINE L1 -50 6071 5560 878 204 6 0 chr6 25083040 25083202 -157332040 - FRAM SINE Alu -12 164 2 449 238 46 66 chr6 25085978 25086226 -157329016 + L2 LINE L2 2778 3011 -302 28 61 0 0 chr6 25087263 25087312 -157327930 + AT_rich Low_complexity Low_complexity 1 49 0 204 40 0 0 chr6 25089795 25089820 -157325422 + (T)n Simple_repeat Simple_repeat 1 25 0 211 241 109 58 chr6 25091237 25091374 -157323868 - MIR SINE MIR 0 262 119 2419 50 0 54 chr6 25092053 25092370 -157322872 + AluY SINE Alu 1 300 -11 180 97 0 0 chr6 25092374 25092405 -157322837 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 932 202 6 0 chr6 25092429 25092602 -157322640 + AluJb SINE Alu 123 296 -16 2830 88 21 26 chr6 25092674 25093097 -157322145 + L1MA1 LINE L1 5873 6293 -9 37 23 0 0 chr6 25093098 25093142 -157322100 + AT_rich Low_complexity Low_complexity 1 44 0 14282 135 33 7 chr6 25093142 25095457 -157319785 - Tigger1 DNA MER2_type -14 2404 30 295 338 89 19 chr6 25095645 25095914 -157319328 - LTR16C LTR ERVL -14 477 190 274 271 128 60 chr6 25097227 25097360 -157317882 + MLT1J2 LTR MaLR 301 442 -8 2218 110 0 0 chr6 25097386 25097685 -157317557 - AluSg SINE Alu -11 299 1 778 304 148 25 chr6 25097990 25098463 -157316779 - LTR67 LTR ERVL -24 533 3 2245 71 4 0 chr6 25100728 25101009 -157314233 + AluY SINE Alu 5 286 -25 31 0 0 0 chr6 25101009 25101040 -157314202 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 25101549 25101572 -157313670 + AT_rich Low_complexity Low_complexity 1 23 0 514 199 43 43 chr6 25101903 25102044 -157313198 - L1MC1 LINE L1 0 6613 6473 1736 174 146 6 chr6 25102044 25102407 -157312835 - MSTA LTR MaLR 0 428 15 1853 210 78 0 chr6 25102414 25102852 -157312390 - L1MC1 LINE L1 -138 6475 6004 7971 221 50 62 chr6 25102854 25104910 -157310332 - L1MC1 LINE L1 -783 5643 3563 2075 140 21 48 chr6 25104910 25105282 -157309960 - THE1B LTR MaLR -2 362 1 7971 221 50 62 chr6 25105282 25106994 -157308248 - L1MC1 LINE L1 -2863 3563 1928 1973 129 45 3 chr6 25106994 25107280 -157307962 + AluSx SINE Alu 1 298 -14 7971 221 50 62 chr6 25107280 25107557 -157307685 - L1MC1 LINE L1 -4498 1928 1649 848 182 78 29 chr6 25107562 25107804 -157307438 - L1MC1 LINE L1 -4994 1432 1179 1974 238 56 55 chr6 25107831 25108051 -157307191 + L1MD2 LINE L1 5454 5672 -687 1950 136 158 13 chr6 25108051 25108425 -157306817 + MSTA LTR MaLR 1 428 0 1974 238 56 55 chr6 25108425 25108882 -157306360 + L1MD2 LINE L1 5672 6132 -227 182 88 0 29 chr6 25108914 25108948 -157306294 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1039 212 47 56 chr6 25109049 25109370 -157305872 + Charlie2 DNA MER1_type 1858 2175 -687 464 222 32 32 chr6 25109564 25109690 -157305552 + MLT1B LTR MaLR 1 126 -264 1010 192 38 13 chr6 25109692 25110001 -157305241 - L1M3 LINE L1 -706 5474 5164 520 342 125 49 chr6 25110037 25110689 -157304553 - L2 LINE L2 -2 3270 2568 484 318 198 0 chr6 25110725 25111102 -157304140 + L2 LINE L2 2751 3215 -98 22 25 0 25 chr6 25111610 25111627 -157303615 + AT_rich Low_complexity Low_complexity 1 17 -22 1927 156 0 3 chr6 25111627 25111916 -157303326 - AluSx SINE Alu -23 289 2 22 25 0 25 chr6 25111916 25111938 -157303304 + AT_rich Low_complexity Low_complexity 17 39 0 265 227 15 0 chr6 25113379 25113445 -157301797 + MER4-int LTR ERV1 1111 1177 -5421 283 263 42 11 chr6 25113469 25113564 -157301678 - L1MEc LINE L1 -4687 1709 1612 236 260 27 0 chr6 25113692 25113765 -157301477 - L1MEc LINE L1 -4996 1400 1326 180 184 158 26 chr6 25114176 25114252 -157300990 - MIR3 SINE MIR -6 202 117 213 242 0 147 chr6 25114272 25114367 -157300875 - L2 LINE L2 -2 3270 3190 24 32 0 0 chr6 25114494 25114525 -157300717 + AT_rich Low_complexity Low_complexity 1 31 0 309 68 0 0 chr6 25116152 25116196 -157299046 + (CA)n Simple_repeat Simple_repeat 2 45 0 197 325 52 39 chr6 25116574 25116728 -157298514 - L2 LINE L2 -473 2841 2686 935 215 61 0 chr6 25117973 25118219 -157297023 - L1MD3 LINE L1 -9 7986 7726 243 215 81 0 chr6 25118220 25118288 -157296954 + L1MC4a LINE L1 7298 7363 -445 2322 132 11 21 chr6 25118302 25118681 -157296561 - THE1C LTR MaLR 0 375 1 9115 130 51 5 chr6 25118681 25120192 -157295050 - THE1C-int LTR MaLR 0 1580 1 1692 199 38 14 chr6 25120192 25120558 -157294684 - THE1C LTR MaLR 0 375 1 511 236 13 34 chr6 25120558 25120758 -157294484 + L1MC4 LINE L1 7359 7583 -251 537 248 89 32 chr6 25120832 25120989 -157294253 + FRAM SINE Alu 1 166 0 407 286 122 19 chr6 25121841 25122054 -157293188 - MIR SINE MIR 0 262 28 31 44 0 0 chr6 25122545 25122590 -157292652 + AT_rich Low_complexity Low_complexity 1 45 0 3710 170 16 40 chr6 25122710 25123500 -157291742 - L1MC1 LINE L1 -8 6325 5555 250 373 27 27 chr6 25123626 25123736 -157291506 + MER5B DNA MER1_type 69 178 0 3808 156 19 33 chr6 25124377 25125109 -157290133 + MER50 LTR ERV1 1 722 -12 307 338 56 6 chr6 25125156 25125316 -157289926 + LTR16B LTR ERVL 137 304 -160 3120 151 24 6 chr6 25125326 25125862 -157289380 + MER41C LTR ERV1 9 554 0 3684 144 14 65 chr6 25127208 25127936 -157287306 - LTR8 LTR ERV1 0 691 1 385 280 80 0 chr6 25128013 25128138 -157287104 - MER5A DNA MER1_type 0 189 55 237 227 45 91 chr6 25128259 25128347 -157286895 - MER5A DNA MER1_type -102 87 4 400 280 19 19 chr6 25130298 25130405 -157284837 - L2 LINE L2 -12 3301 3195 225 94 0 0 chr6 25130807 25130839 -157284403 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 443 274 98 7 chr6 25131041 25131194 -157284048 - MIR3 SINE MIR -12 196 30 347 314 29 40 chr6 25132356 25132531 -157282711 - MLT1K LTR MaLR -284 304 132 617 222 72 75 chr6 25132659 25132993 -157282249 + MER57A LTR ERV1 68 400 -3 210 309 170 11 chr6 25133731 25133825 -157281417 + MIR3 SINE MIR 5 113 -95 24 0 0 0 chr6 25134447 25134471 -157280771 + AT_rich Low_complexity Low_complexity 1 24 0 241 244 49 130 chr6 25134644 25134767 -157280475 - L2 LINE L2 0 3313 3201 25 31 0 0 chr6 25136197 25136229 -157279013 + AT_rich Low_complexity Low_complexity 1 32 0 1955 167 37 42 chr6 25136312 25136674 -157278568 + MSTB1 LTR MaLR 1 362 -70 2502 57 0 0 chr6 25136674 25136970 -157278272 - AluY SINE Alu -15 296 1 1955 167 37 42 chr6 25136970 25137037 -157278205 + MSTB1 LTR MaLR 362 428 -4 370 240 29 19 chr6 25137486 25137590 -157277652 - MLT1J2 LTR MaLR -287 163 59 1812 144 11 7 chr6 25137625 25137909 -157277333 - AluJb SINE Alu -27 285 1 293 241 88 44 chr6 25138701 25138838 -157276404 - MLT1J LTR MaLR -37 474 332 353 336 33 56 chr6 25139249 25139463 -157275779 - L2 LINE L2 -188 3084 2876 183 311 149 0 chr6 25139495 25139569 -157275673 - L2 LINE L2 -435 2879 2795 2150 122 0 0 chr6 25140276 25140563 -157274679 - AluSx SINE Alu -25 287 1 1237 163 5 0 chr6 25140874 25141076 -157274166 - MER2 DNA MER2_type -135 210 8 180 0 0 0 chr6 25141922 25141942 -157273300 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 26 30 0 0 chr6 25142106 25142139 -157273103 + AT_rich Low_complexity Low_complexity 1 33 0 697 320 34 6 chr6 25142295 25142473 -157272769 - MER91A DNA MER1_type -13 183 1 246 32 0 0 chr6 25142531 25142562 -157272680 + (TTG)n Simple_repeat Simple_repeat 2 32 0 223 350 55 38 chr6 25142805 25142988 -157272254 - MIR SINE MIR -48 214 29 917 286 54 60 chr6 25143091 25143763 -157271479 - L2 LINE L2 -4 3309 2626 221 303 26 13 chr6 25143791 25143867 -157271375 - L2 LINE L2 -782 2532 2456 22 0 0 0 chr6 25144273 25144295 -157270947 + AT_rich Low_complexity Low_complexity 1 22 0 285 344 11 0 chr6 25144688 25144781 -157270461 + MIR SINE MIR 168 261 -1 679 202 0 0 chr6 25144933 25145047 -157270195 - MER81 DNA DNA 0 114 1 1055 291 8 16 chr6 25145487 25145869 -157269373 + L1ME1 LINE L1 5771 6149 -17 789 183 0 0 chr6 25146197 25146350 -157268892 + (CA)n Simple_repeat Simple_repeat 1 153 0 1464 234 24 33 chr6 25146358 25146915 -157268327 - L1MC/D LINE L1 -686 5673 5127 22 56 0 0 chr6 25147210 25147246 -157267996 + AT_rich Low_complexity Low_complexity 1 36 0 244 321 30 30 chr6 25148213 25148347 -157266895 + MIR SINE MIR 123 256 -6 22 35 0 0 chr6 25148767 25148796 -157266446 + AT_rich Low_complexity Low_complexity 1 29 0 1759 150 60 119 chr6 25149619 25149839 -157265403 + MSTB LTR MaLR 2 183 -243 2063 109 7 0 chr6 25149839 25150113 -157265129 - AluSq SINE Alu -37 276 1 1759 150 60 119 chr6 25150113 25150344 -157264898 + MSTB LTR MaLR 183 426 0 795 309 153 15 chr6 25150713 25151333 -157263909 + L2 LINE L2 2599 3308 -5 213 362 62 45 chr6 25151532 25151935 -157263307 + L2 LINE L2 1530 1939 -1375 379 323 67 27 chr6 25152927 25153224 -157262018 + L1MC/D LINE L1 5445 5753 -2055 701 262 99 4 chr6 25153593 25153826 -157261416 - MIR SINE MIR 0 262 8 198 0 0 0 chr6 25155510 25155532 -157259710 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1899 130 7 4 chr6 25155845 25156121 -157259121 + AluSg SINE Alu 1 277 -33 243 0 0 0 chr6 25156125 25156152 -157259090 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr6 25156205 25156229 -157259013 + AT_rich Low_complexity Low_complexity 1 24 0 1695 183 94 40 chr6 25156560 25156893 -157258349 + MSTB LTR MaLR 1 361 -65 2385 100 6 0 chr6 25156893 25157204 -157258038 - AluSq SINE Alu 0 313 1 1695 183 94 40 chr6 25157204 25157274 -157257968 + MSTB LTR MaLR 361 426 0 343 310 82 35 chr6 25158289 25158544 -157256698 - LTR16A LTR ERVL -159 291 25 2069 108 0 7 chr6 25158661 25158949 -157256293 - AluSc SINE Alu -23 286 1 354 254 28 56 chr6 25159341 25159483 -157255759 - HERV16 LTR ERVL -809 4845 4708 570 293 142 21 chr6 25159532 25159870 -157255372 - HERV16 LTR ERVL -1103 4661 4283 341 337 50 44 chr6 25159901 25160638 -157254604 - HERV16 LTR ERVL -1288 4197 3440 344 328 42 32 chr6 25160840 25161031 -157254211 - HERV16 LTR ERVL -1905 3091 2937 1409 298 125 28 chr6 25161140 25161844 -157253398 - HERV16 LTR ERVL -2628 2368 1597 3103 46 0 10 chr6 25161861 25162249 -157252993 - L1PA7 LINE L1 0 6154 5771 3710 53 25 0 chr6 25162661 25163133 -157252109 + L1PA5 LINE L1 5669 6152 -2 1177 289 65 37 chr6 25163210 25163806 -157251436 - HERV16 LTR ERVL -4056 940 328 843 337 90 3 chr6 25164107 25164496 -157250746 - LTR16A LTR ERVL -10 440 18 1488 174 0 0 chr6 25164940 25165198 -157250044 - Tigger3(Golem) DNA MER2_type 0 3029 2772 653 206 76 0 chr6 25165195 25165326 -157249916 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 1743 213 3 14 chr6 25166074 25166445 -157248797 + MER21B LTR ERV1 1 454 -477 2002 147 27 51 chr6 25166457 25166866 -157248376 - MSTB1 LTR MaLR -18 414 16 1420 224 75 36 chr6 25166846 25167288 -157247954 + MER21B LTR ERV1 354 812 -51 * 333 47 0 0 chr6 25167622 25167665 -157247577 + (CA)n Simple_repeat Simple_repeat 1 43 0 188 167 21 0 chr6 25167666 25167714 -157247528 + CT-rich Low_complexity Low_complexity 1 49 0 5453 232 67 24 chr6 25167727 25170703 -157244539 + L1MC2 LINE L1 1435 4633 -1793 843 235 162 15 chr6 25170705 25171035 -157244207 - MSTB2 LTR MaLR 0 396 1 4350 175 46 79 chr6 25171041 25171215 -157244027 + L1MC2 LINE L1 5407 5585 -1039 1877 169 0 7 chr6 25171215 25171511 -157243731 - AluSx SINE Alu -18 294 1 4350 175 46 79 chr6 25171511 25171810 -157243432 + L1MC2 LINE L1 5585 5892 -732 1034 169 6 12 chr6 25171810 25171976 -157243266 - FAM SINE Alu -7 168 4 4350 175 46 79 chr6 25171976 25172131 -157243111 + L1MC2 LINE L1 5892 6051 -573 2426 51 0 3 chr6 25172131 25172425 -157242817 - AluY SINE Alu -18 293 1 4350 175 46 79 chr6 25172425 25172787 -157242455 + L1MC2 LINE L1 6051 6373 -251 2216 114 0 3 chr6 25172787 25173094 -157242148 - AluSx SINE Alu 0 312 7 4350 175 46 79 chr6 25173094 25173327 -157241915 + L1MC2 LINE L1 6373 6612 -12 1090 258 121 12 chr6 25177446 25177768 -157237474 - MER69 DNA AcHobo -2160 366 10 551 298 154 41 chr6 25178574 25178721 -157236521 - L2 LINE L2 -4 3309 3180 2578 70 38 5 chr6 25178721 25179091 -157236151 + L1PA7 LINE L1 5773 6154 0 551 298 154 41 chr6 25179091 25179468 -157235774 - L2 LINE L2 -133 3180 2713 1429 158 98 21 chr6 25179468 25179753 -157235489 - AluJo SINE Alu -5 307 1 551 298 154 41 chr6 25179753 25179803 -157235439 - L2 LINE L2 -600 2713 2670 186 43 0 0 chr6 25180527 25180550 -157234692 + (TG)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chr6 25182094 25182134 -157233108 + AT_rich Low_complexity Low_complexity 1 40 0 2392 61 3 0 chr6 25182524 25182818 -157232424 - AluY SINE Alu -16 295 1 228 350 94 33 chr6 25183052 25183232 -157232010 + L3b LINE CR1 1391 1581 -2 180 171 171 57 chr6 25183904 25183974 -157231268 - MIR SINE MIR -31 231 154 204 182 0 0 chr6 25184437 25184481 -157230761 + GA-rich Low_complexity Low_complexity 2 45 0 * 336 102 0 0 chr6 25184475 25184524 -157230718 + (GA)n Simple_repeat Simple_repeat 2 50 0 * 843 123 0 34 chr6 25184513 25184692 -157230550 + (GGGAA)n Simple_repeat Simple_repeat 5 177 0 14249 62 6 1 chr6 25184857 25187508 -157227734 + L1PA5 LINE L1 3494 6148 -6 22 35 0 0 chr6 25187588 25187617 -157227625 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 25188111 25188132 -157227110 + GC_rich Low_complexity Low_complexity 1 21 0 621 157 0 0 chr6 25188321 25188436 -157226806 + GA-rich Low_complexity Low_complexity 2 116 0 297 319 15 15 chr6 25188482 25188617 -157226625 + L1ME LINE L1 352 486 -5886 1685 267 57 53 chr6 25188634 25188687 -157226555 + L1ME LINE L1 415 466 -5906 1306 233 101 34 chr6 25188687 25189125 -157226117 + MLT1C LTR MaLR 1 467 0 1685 267 57 53 chr6 25189125 25189915 -157225327 + L1ME LINE L1 466 1261 -5111 430 289 59 8 chr6 25189882 25190138 -157225104 + L1ME LINE L1 1174 1442 -4942 * 1495 224 60 70 chr6 25190139 25190598 -157224644 - L1MCc LINE L1 -1484 5457 5004 1690 160 20 36 chr6 25190598 25190904 -157224338 + AluJb SINE Alu 1 301 -11 1495 224 60 70 chr6 25190904 25191042 -157224200 - L1MCc LINE L1 -1937 5004 4866 1397 200 33 23 chr6 25191051 25191356 -157223886 + AluJb SINE Alu 3 310 -2 267 152 0 0 chr6 25191359 25191405 -157223837 + GA-rich Low_complexity Low_complexity 4 49 0 1087 135 0 8 chr6 25191408 25191770 -157223472 + (GGAA)n Simple_repeat Simple_repeat 1 360 0 209 176 0 20 chr6 25191770 25191821 -157223421 + GA-rich Low_complexity Low_complexity 1 50 0 2109 264 74 26 chr6 25191830 25192494 -157222748 - L1MCc LINE L1 -2085 4856 4116 1703 171 77 12 chr6 25192494 25192821 -157222421 - MER7A DNA MER2_type 0 346 1 2109 264 74 26 chr6 25192821 25193260 -157221982 - L1MCc LINE L1 -2825 4116 3700 236 212 15 0 chr6 25193331 25193397 -157221845 + (TA)n Simple_repeat Simple_repeat 1 67 0 455 105 13 0 chr6 25193404 25193480 -157221762 + L1MA9 LINE L1 6231 6307 -5 450 304 60 0 chr6 25193497 25193681 -157221561 - L1MCc LINE L1 -3317 3624 3430 1603 265 88 23 chr6 25193695 25194560 -157220682 - L1MCc LINE L1 -4681 2191 795 1834 183 38 9 chr6 25194649 25194994 -157220248 + MLT1A1 LTR MaLR 11 365 0 1231 170 59 0 chr6 25195730 25195983 -157219259 - L1MA7 LINE L1 -26 6265 5998 872 291 86 12 chr6 25196079 25196484 -157218758 - L1MCc LINE L1 -5985 438 4 345 378 0 0 chr6 25196615 25196734 -157218508 - MLT1I LTR MaLR -89 320 202 489 314 88 49 chr6 25197078 25197530 -157217712 + L3b LINE CR1 1105 1574 -9 240 219 0 27 chr6 25197907 25197944 -157217298 + (TATATG)n Simple_repeat Simple_repeat 6 42 -34 1939 190 3 0 chr6 25197944 25198291 -157216951 - MER7A DNA MER2_type 0 346 1 240 219 0 27 chr6 25198291 25198326 -157216916 + (TATATG)n Simple_repeat Simple_repeat 42 76 0 21 0 0 0 chr6 25199276 25199297 -157215945 + AT_rich Low_complexity Low_complexity 1 21 0 1453 299 42 28 chr6 25199899 25200550 -157214692 - Charlie7 DNA MER1_type -1889 723 64 30 0 0 0 chr6 25201643 25201673 -157213569 + AT_rich Low_complexity Low_complexity 1 30 0 1957 176 0 0 chr6 25204507 25204819 -157210423 - AluJb SINE Alu 0 312 1 957 360 48 12 chr6 25205431 25205850 -157209392 - MLT2E LTR ERVL -192 436 3 6185 281 57 39 chr6 25206119 25207873 -157207369 - ERVL LTR ERVL -387 5377 3571 3351 98 4 2 chr6 25207873 25208323 -157206919 - MLT2A2 LTR ERVL 0 453 3 6185 281 57 39 chr6 25208323 25208839 -157206403 - ERVL LTR ERVL -2193 3571 3066 1653 290 54 12 chr6 25208832 25209505 -157205737 - ERVL LTR ERVL -2644 3010 2306 * 213 263 12 50 chr6 25209802 25209882 -157205360 + L2 LINE L2 3232 3308 -5 468 229 57 8 chr6 25210238 25210360 -157204882 + MER94 DNA DNA 2 129 -5 24 0 0 0 chr6 25212154 25212178 -157203064 + AT_rich Low_complexity Low_complexity 1 24 0 529 231 33 0 chr6 25212297 25212418 -157202824 - L1MC4a LINE L1 -992 6816 6692 180 0 0 0 chr6 25212571 25212591 -157202651 + (T)n Simple_repeat Simple_repeat 1 20 0 1866 124 8 0 chr6 25212591 25212850 -157202392 - AluSq SINE Alu -50 263 3 1051 311 125 22 chr6 25215305 25215904 -157199338 + MLT2F LTR ERVL 3 663 0 258 32 0 0 chr6 25216668 25216699 -157198543 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 88 0 0 chr6 25218289 25218323 -157196919 + (GA)n Simple_repeat Simple_repeat 1 34 0 275 289 32 90 chr6 25219768 25219924 -157195318 + MIR SINE MIR 34 180 -82 852 162 11 76 chr6 25221752 25221937 -157193305 + MLT1C LTR MaLR 3 175 -292 958 141 0 12 chr6 25221952 25222122 -157193120 + L1M2 LINE L1 2188 2355 -4494 908 202 27 11 chr6 25222184 25222372 -157192870 + MLT1C LTR MaLR 276 466 -1 221 375 73 0 chr6 25222613 25222709 -157192533 + L2 LINE L2 3125 3227 -45 201 196 0 0 chr6 25225612 25225663 -157189579 + (CA)n Simple_repeat Simple_repeat 1 51 0 236 244 0 0 chr6 25225811 25225856 -157189386 + MER5B DNA MER1_type 6 50 -128 924 78 0 0 chr6 25225978 25226093 -157189149 + AluY SINE Alu 168 282 -29 258 56 0 0 chr6 25226093 25226129 -157189113 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 379 252 0 59 chr6 25226174 25226293 -157188949 + MER5B DNA MER1_type 60 171 -7 222 350 20 10 chr6 25226306 25226406 -157188836 + MIR SINE MIR 118 218 -44 33 0 0 0 chr6 25226928 25226961 -157188281 + AT_rich Low_complexity Low_complexity 1 33 0 452 269 81 12 chr6 25227156 25227316 -157187926 + MIR3 SINE MIR 37 207 -1 243 192 67 29 chr6 25228161 25228265 -157186977 + HAL1 LINE L1 46 153 -2354 1278 106 0 0 chr6 25228446 25228616 -157186626 + AluSq SINE Alu 1 170 -143 288 0 0 0 chr6 25229148 25229180 -157186062 + (TA)n Simple_repeat Simple_repeat 2 33 0 614 152 9 0 chr6 25229180 25229285 -157185957 - AluSg/x SINE Alu -12 298 193 1822 131 4 4 chr6 25229546 25229806 -157185436 - AluSq SINE Alu -53 260 1 273 312 9 37 chr6 25229880 25229989 -157185253 - MER5B DNA MER1_type -71 107 2 261 213 160 0 chr6 25230681 25230775 -157184467 + L1MC/D LINE L1 5665 5773 -2035 24 32 0 0 chr6 25231021 25231052 -157184190 + AT_rich Low_complexity Low_complexity 1 31 0 4256 218 62 46 chr6 25232400 25233147 -157182095 - L1MC1 LINE L1 -18 6595 5862 6838 59 8 3 chr6 25233147 25234545 -157180697 + L1PA5 LINE L1 4748 6149 -5 4256 218 62 46 chr6 25234545 25234649 -157180593 - L1MC1 LINE L1 -751 5862 5761 2440 86 53 0 chr6 25234649 25234986 -157180256 + THE1A LTR MaLR 1 355 0 4256 218 62 46 chr6 25234986 25236759 -157178483 - L1MC1 LINE L1 -852 5761 3854 1025 161 6 11 chr6 25236760 25236934 -157178308 - MER6B DNA MER2_type 0 210 38 3782 220 60 26 chr6 25236943 25238685 -157176557 - L1MC1 LINE L1 -2592 3834 2036 2013 168 24 63 chr6 25238697 25239107 -157176135 - MSTB LTR MaLR -32 394 1 8404 180 17 25 chr6 25239107 25240771 -157174471 - MSTB-int LTR MaLR 0 1651 1 2382 174 21 5 chr6 25240771 25241190 -157174052 - MSTB LTR MaLR 0 426 1 7036 190 46 30 chr6 25241191 25242550 -157172692 - L1MC1 LINE L1 -4399 2027 538 207 0 0 0 chr6 25242550 25242573 -157172669 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7036 190 46 30 chr6 25242573 25243101 -157172141 - L1MC1 LINE L1 -5888 538 20 38 22 0 0 chr6 25243496 25243541 -157171701 + AT_rich Low_complexity Low_complexity 1 45 0 281 330 25 106 chr6 25243637 25243873 -157171369 + MIR SINE MIR 46 262 0 238 337 102 10 chr6 25244185 25244283 -157170959 + MIR SINE MIR 19 125 -83 1776 175 75 0 chr6 25244292 25244612 -157170630 - MER7A DNA MER2_type -2 344 3 2420 34 41 0 chr6 25244999 25245293 -157169949 + AluY SINE Alu 1 306 -5 25 75 0 0 chr6 25245400 25245453 -157169789 + AT_rich Low_complexity Low_complexity 1 53 0 237 356 44 0 chr6 25246675 25246765 -157168477 + MIR SINE MIR 22 115 -93 207 0 0 0 chr6 25247289 25247312 -157167930 + (TA)n Simple_repeat Simple_repeat 2 24 0 318 242 50 61 chr6 25247792 25247891 -157167351 + LTR67 LTR ERVL 419 516 -41 1630 152 105 31 chr6 25248733 25248983 -157166259 - MER7A DNA MER2_type -2693 345 66 2246 127 0 0 chr6 25248983 25249290 -157165952 - AluSq SINE Alu -6 307 1 1630 152 105 31 chr6 25249290 25249362 -157165880 - MER7A DNA MER2_type -2972 66 1 1797 126 35 53 chr6 25251358 25251676 -157163566 + AluSx SINE Alu 1 312 0 2039 194 2 37 chr6 25251784 25252192 -157163050 - MSTD LTR MaLR 0 396 3 6510 238 67 19 chr6 25252194 25253840 -157161402 - MSTD-int LTR MaLR 0 1735 11 1651 201 39 49 chr6 25253844 25253903 -157161339 - MSTD LTR MaLR -11 385 327 2921 6 0 0 chr6 25253903 25254218 -157161024 + AluYb8 SINE Alu 1 315 -3 1651 201 39 49 chr6 25254218 25254547 -157160695 - MSTD LTR MaLR -69 327 1 364 288 33 47 chr6 25255416 25255628 -157159614 - L1MC4 LINE L1 -1026 7016 6808 192 97 0 0 chr6 25257002 25257033 -157158209 + (CGAG)n Simple_repeat Simple_repeat 2 32 0 2585 48 3 3 chr6 25257419 25257728 -157157514 + AluY SINE Alu 3 311 0 237 163 0 0 chr6 25257901 25257950 -157157292 + A-rich Low_complexity Low_complexity 4 52 0 294 263 26 40 chr6 25258037 25258113 -157157129 - L2 LINE L2 -47 3266 3192 27 49 0 0 chr6 25261085 25261126 -157154116 + AT_rich Low_complexity Low_complexity 1 41 0 1390 116 65 0 chr6 25261340 25261555 -157153687 - MER30 DNA MER1_type -1 229 1 260 295 24 69 chr6 25262427 25262592 -157152650 - MIR SINE MIR -41 167 11 1165 209 146 7 chr6 25262702 25263004 -157152238 + MER2 DNA MER2_type 1 344 -1 27 0 0 0 chr6 25263536 25263563 -157151679 + AT_rich Low_complexity Low_complexity 1 27 0 200 264 0 42 chr6 25263583 25263655 -157151587 + A-rich Low_complexity Low_complexity 5 73 0 181 362 7 7 chr6 25263729 25263867 -157151375 + L2 LINE L2 2827 2964 -308 269 287 55 105 chr6 25264238 25264419 -157150823 + MER5B DNA MER1_type 7 178 0 336 325 124 18 chr6 25264709 25264878 -157150364 + MIR SINE MIR 1 187 -75 318 336 81 20 chr6 25266469 25266618 -157148624 - L2 LINE L2 0 3272 3115 2133 117 0 7 chr6 25266735 25267026 -157148216 + AluSg SINE Alu 1 289 -21 254 320 13 0 chr6 25267903 25267978 -157147264 - L2 LINE L2 -12 3260 3185 1121 128 17 39 chr6 25267987 25268167 -157147075 + AluSg/x SINE Alu 115 290 -20 226 164 18 0 chr6 25268173 25268228 -157147014 + L1MCa LINE L1 2006 2061 -4365 272 271 35 0 chr6 25268273 25268358 -157146884 + L1MC4 LINE L1 6614 6701 -1341 2078 114 17 17 chr6 25268717 25269016 -157146226 + AluSx SINE Alu 4 302 -10 7713 26 1 0 chr6 25269016 25270643 -157144599 + L1PA3 LINE L1 4528 6155 0 238 193 34 0 chr6 25271184 25271208 -157144034 + (TATATG)n Simple_repeat Simple_repeat 1 23 -68 2485 160 87 58 chr6 25271208 25271548 -157143694 + MER6A DNA MER2_type 2 368 -497 2022 150 7 0 chr6 25271548 25271855 -157143387 + AluSx SINE Alu 3 311 -1 2485 160 87 58 chr6 25271855 25272101 -157143141 + MER6A DNA MER2_type 368 605 0 238 193 34 0 chr6 25272101 25272164 -157143078 + (TATATG)n Simple_repeat Simple_repeat 23 91 0 47 78 0 0 chr6 25274626 25274729 -157140513 + AT_rich Low_complexity Low_complexity 1 103 0 421 327 187 21 chr6 25275517 25276160 -157139082 - L2 LINE L2 -1 3312 2550 326 300 133 48 chr6 25276359 25276395 -157138847 - L1MC4a LINE L1 -1898 5910 5875 399 288 158 42 chr6 25276395 25276756 -157138486 - L1MB7 LINE L1 -320 5864 5462 600 275 162 28 chr6 25276939 25277223 -157138019 - L2 LINE L2 -955 2359 2038 217 324 35 56 chr6 25278861 25279003 -157136239 - L2 LINE L2 -1483 1831 1693 354 297 193 34 chr6 25279117 25279386 -157135856 - L2 LINE L2 -2772 542 231 226 279 41 93 chr6 25280189 25280343 -157134899 + MIR SINE MIR 13 162 -62 414 250 21 35 chr6 25282046 25282190 -157133052 - L1ME LINE L1 -460 5661 5520 229 343 137 20 chr6 25282252 25282398 -157132844 - L2 LINE L2 -8 3264 3102 217 345 62 18 chr6 25282705 25282818 -157132424 + MIR3 SINE MIR 6 123 -85 236 280 161 35 chr6 25283125 25283268 -157131974 + L2 LINE L2 3152 3312 -1 593 0 28 0 chr6 25283767 25283839 -157131403 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 1537 215 133 95 chr6 25283886 25284625 -157130617 - L1ME2 LINE L1 -9 6224 5458 2044 147 0 3 chr6 25284631 25284938 -157130304 - AluSx SINE Alu -4 308 3 2183 127 0 0 chr6 25285017 25285317 -157129925 - AluSq SINE Alu -13 300 1 3596 259 83 15 chr6 25285337 25286934 -157128308 - L1ME2 LINE L1 -813 5402 3697 705 251 87 18 chr6 25286959 25287350 -157127892 - L1ME2 LINE L1 -2842 3373 2956 599 338 34 22 chr6 25287348 25287668 -157127574 - L1ME2 LINE L1 -5972 424 101 * 37 23 0 0 chr6 25287877 25287921 -157127321 + AT_rich Low_complexity Low_complexity 1 44 0 1513 244 161 16 chr6 25288108 25288604 -157126638 - MLT1E LTR MaLR -25 568 1 286 151 27 0 chr6 25288641 25288714 -157126528 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 386 316 26 32 chr6 25288806 25289148 -157126094 + L1ME3 LINE L1 1277 1616 -4780 368 99 37 12 chr6 25289152 25289233 -157126009 + (TA)n Simple_repeat Simple_repeat 2 84 0 696 281 33 24 chr6 25289253 25289702 -157125540 + L1ME3 LINE L1 5081 5534 -709 824 291 67 17 chr6 25289726 25290084 -157125158 + L1ME3 LINE L1 5854 6229 -2 580 293 5 49 chr6 25290393 25290598 -157124644 - MIR SINE MIR -6 256 61 242 250 0 17 chr6 25290600 25290660 -157124582 + L2 LINE L2 3254 3312 -1 369 315 293 6 chr6 25290856 25291180 -157124062 - L2 LINE L2 0 3313 2897 295 265 10 10 chr6 25291523 25291621 -157123621 - MER5A DNA MER1_type -83 106 9 287 348 81 6 chr6 25291960 25292121 -157123121 - L2 LINE L2 -6 3307 3135 22 0 0 0 chr6 25292646 25292668 -157122574 + AT_rich Low_complexity Low_complexity 1 22 0 280 307 193 0 chr6 25294523 25294663 -157120579 + L2 LINE L2 3145 3311 -2 624 279 20 56 chr6 25295008 25295259 -157119983 + MIR SINE MIR 2 243 -19 1548 136 3 92 chr6 25295760 25296076 -157119166 - AluJb SINE Alu -20 292 5 225 161 69 0 chr6 25296471 25296558 -157118684 + (TA)n Simple_repeat Simple_repeat 1 93 0 673 304 75 8 chr6 25296938 25297191 -157118051 - MLT1J LTR MaLR -4 507 238 6695 213 60 60 chr6 25297455 25300287 -157114955 + L1MC3 LINE L1 5281 7995 0 630 199 171 0 chr6 25301220 25301401 -157113841 - L1MA4 LINE L1 -6 6294 6083 1698 156 3 11 chr6 25301483 25301765 -157113477 - AluJb SINE Alu -32 280 1 2533 57 0 13 chr6 25301979 25302294 -157112948 + AluY SINE Alu 1 311 0 6641 28 13 1 chr6 25302296 25303090 -157112152 + L1PA5 LINE L1 5352 6154 0 312 326 78 0 chr6 25303221 25303362 -157111880 + MIR SINE MIR 105 256 -6 201 323 50 20 chr6 25304577 25304676 -157110566 + L2 LINE L2 2588 2689 -625 889 279 50 76 chr6 25306292 25306753 -157108489 + L1ME LINE L1 13 460 -5610 2285 122 0 0 chr6 25306753 25307064 -157108178 + AluSx SINE Alu 2 312 0 889 279 50 76 chr6 25307064 25307139 -157108103 + L1ME LINE L1 460 535 -5535 286 293 105 19 chr6 25307166 25307432 -157107810 + L1ME LINE L1 616 904 -5166 678 278 40 31 chr6 25307432 25307655 -157107587 - MLT2F LTR ERVL -438 225 1 1496 191 0 11 chr6 25307782 25308055 -157107187 + AluJb SINE Alu 31 300 -12 928 267 98 4 chr6 25308255 25308532 -157106710 - ERVL LTR ERVL -371 5393 5091 1099 251 67 6 chr6 25308532 25308847 -157106395 + MLT1C LTR MaLR 6 339 -128 2061 275 14 29 chr6 25308848 25309405 -157105837 - ERVL LTR ERVL -1937 3827 3279 2673 255 81 25 chr6 25309418 25310593 -157104649 - ERVL LTR ERVL -2692 3072 1795 312 268 82 0 chr6 25310594 25310691 -157104551 + L1M4 LINE L1 4260 4364 -1782 747 303 56 14 chr6 25310692 25310976 -157104266 - ERVL LTR ERVL -4704 1060 765 700 193 225 0 chr6 25311572 25311759 -157103483 - MLT2F LTR ERVL -2 661 433 1350 228 102 39 chr6 25311769 25312151 -157103091 - MLT1F1 LTR MaLR -6 561 156 594 240 0 27 chr6 25312162 25312312 -157102930 + MLT1A1 LTR MaLR 13 158 -207 1612 76 23 1 chr6 25312312 25312648 -157102594 - L1PA8 LINE L1 -691 5481 5141 5055 76 4 7 chr6 25312648 25313328 -157101914 + L1PA8 LINE L1 5493 6171 -1 980 227 14 5 chr6 25313336 25313556 -157101686 + MLT1A1 LTR MaLR 144 365 0 513 208 92 8 chr6 25313561 25313681 -157101561 - MLT1F1 LTR MaLR -428 139 10 1137 254 69 40 chr6 25313699 25314219 -157101023 + L1ME2 LINE L1 5627 6161 -3 234 197 79 150 chr6 25314501 25314628 -157100614 + MLT1H LTR MaLR 229 346 -203 193 305 189 24 chr6 25316220 25316367 -157098875 + MIR SINE MIR 15 193 -69 2102 89 0 0 chr6 25316367 25316658 -157098584 + L1PA8 LINE L1 5878 6168 -4 193 305 189 24 chr6 25316658 25316674 -157098568 + MIR SINE MIR 193 205 -57 3081 167 48 32 chr6 25317594 25318301 -157096941 - L1MA9 LINE L1 -5 6307 5590 1195 112 0 22 chr6 25318304 25318482 -157096760 - AluY SINE Alu -36 275 102 5899 176 66 27 chr6 25318482 25319993 -157095249 - L1MA9 LINE L1 -722 5590 4011 261 0 0 0 chr6 25320361 25320390 -157094852 + (CA)n Simple_repeat Simple_repeat 2 30 0 400 123 15 0 chr6 25321564 25321633 -157093609 + L1PA13 LINE L1 6081 6158 -10 5598 193 39 27 chr6 25323150 25325357 -157089885 - L1PA16 LINE L1 -16 6150 3932 2221 42 7 14 chr6 25325399 25325683 -157089559 - L1PA5 LINE L1 -7 6147 5866 5512 53 16 0 chr6 25325683 25326872 -157088370 + L1PA5 LINE L1 4663 5864 -290 919 204 0 0 chr6 25327647 25327814 -157087428 + MER3 DNA MER1_type 43 209 0 240 178 123 55 chr6 25327837 25327910 -157087332 - L1MC4 LINE L1 -415 7627 7550 2168 103 3 13 chr6 25328311 25328613 -157086629 + AluSx SINE Alu 14 312 0 323 220 99 0 chr6 25328938 25329029 -157086213 + L1MB7 LINE L1 6073 6172 -12 2054 113 7 0 chr6 25329136 25329420 -157085822 + AluSp SINE Alu 1 286 -27 1580 200 60 3 chr6 25330461 25330811 -157084431 - L1MB4 LINE L1 -15 6165 5796 1656 175 17 3 chr6 25331579 25331870 -157083372 - AluSx SINE Alu -17 295 1 296 82 0 0 chr6 25334637 25334686 -157080556 + Charlie5 DNA MER1_type 2438 2486 -126 1901 99 4 0 chr6 25334771 25335024 -157080218 - AluSg SINE Alu -14 296 43 27 0 0 0 chr6 25335256 25335283 -157079959 + AT_rich Low_complexity Low_complexity 1 27 0 312 280 9 19 chr6 25335356 25335463 -157079779 - L1MC4 LINE L1 -1323 6719 6614 * 315 272 0 22 chr6 25335373 25335465 -157079777 + L1MC4 LINE L1 6614 6703 -1339 996 214 97 13 chr6 25336258 25336557 -157078685 + MER33 DNA MER1_type 1 324 0 389 271 60 12 chr6 25336687 25336853 -157078389 + L1ME LINE L1 5525 5698 -423 23 0 0 0 chr6 25337523 25337546 -157077696 + AT_rich Low_complexity Low_complexity 1 23 0 180 239 152 0 chr6 25338274 25338320 -157076922 + L2 LINE L2 3237 3289 -24 284 188 94 0 chr6 25338454 25338518 -157076724 - L1ME1 LINE L1 -21 6145 6076 * 1840 265 83 24 chr6 25338517 25339678 -157075564 - L1MEc LINE L1 -3135 3080 1874 304 263 32 21 chr6 25339712 25339807 -157075435 - L1ME1 LINE L1 -31 6135 6040 1406 225 48 93 chr6 25339862 25340378 -157074864 + MLT2B1 LTR ERVL 18 510 -10 1512 274 16 42 chr6 25340382 25340795 -157074447 - L1ME1 LINE L1 -187 5979 5580 2149 108 0 3 chr6 25340795 25341091 -157074151 + AluSx SINE Alu 1 295 -17 1512 274 16 42 chr6 25341091 25341180 -157074062 - L1ME1 LINE L1 -586 5580 5490 770 310 73 20 chr6 25341190 25341823 -157073419 - L1MEc LINE L1 -5232 1164 499 272 287 9 43 chr6 25341970 25342085 -157073157 - L1MEc LINE L1 -6241 155 45 24 0 0 0 chr6 25344210 25344234 -157071008 + AT_rich Low_complexity Low_complexity 1 24 0 282 359 56 34 chr6 25344247 25344481 -157070761 - MIR SINE MIR -16 246 8 21669 31 6 0 chr6 25344798 25348196 -157067046 + L1PA3 LINE L1 2751 6154 -1 237 230 23 23 chr6 25348909 25348996 -157066246 + (CATA)n Simple_repeat Simple_repeat 2 88 0 316 249 2 10 chr6 25349033 25349130 -157066112 + L1MC4 LINE L1 7904 7992 -3 388 296 97 36 chr6 25350447 25350643 -157064599 + MIR SINE MIR 20 227 -35 215 341 95 16 chr6 25353676 25353802 -157061440 + L2 LINE L2 3122 3257 -15 268 154 0 0 chr6 25354432 25354484 -157060758 + L1MCc LINE L1 1417 1468 -4955 2226 79 27 3 chr6 25354636 25354928 -157060314 + AluY SINE Alu 4 302 -9 1029 286 123 7 chr6 25354964 25355418 -157059824 + L1ME3A LINE L1 5627 6133 -37 25 0 0 0 chr6 25355439 25355464 -157059778 + AT_rich Low_complexity Low_complexity 1 25 0 667 203 8 0 chr6 25357126 25357249 -157057993 - FLAM_C SINE Alu -12 131 8 337 351 80 0 chr6 25357450 25357638 -157057604 + MIR SINE MIR 48 250 -12 524 381 53 32 chr6 25357815 25358339 -157056903 + L2 LINE L2 2506 3221 -51 311 308 22 11 chr6 25358470 25358561 -157056681 + L2 LINE L2 3202 3293 -20 186 133 0 0 chr6 25359217 25359247 -157055995 + (T)n Simple_repeat Simple_repeat 1 30 0 240 340 28 57 chr6 25359892 25360033 -157055209 - MIR3 SINE MIR -52 156 20 307 274 141 43 chr6 25360851 25361085 -157054157 + MIR SINE MIR 6 262 0 * 344 372 73 38 chr6 25361063 25361404 -157053838 - L3 LINE CR1 -7 1570 1218 8821 115 73 3 chr6 25361722 25363954 -157051288 + L1PA10 LINE L1 3765 6159 -9 246 273 68 61 chr6 25365471 25365603 -157049639 - MIR SINE MIR -123 139 7 216 0 0 0 chr6 25365744 25365768 -157049474 + (A)n Simple_repeat Simple_repeat 1 24 0 195 42 0 0 chr6 25366562 25366586 -157048656 + (T)n Simple_repeat Simple_repeat 1 24 0 7450 22 0 0 chr6 25366742 25367609 -157047633 + L1PA3 LINE L1 5286 6152 -3 312 284 23 0 chr6 25369493 25369581 -157045661 + L1MC4 LINE L1 6614 6703 -1339 * 335 301 0 0 chr6 25369522 25369615 -157045627 - L1MC4 LINE L1 -1336 6706 6614 * 345 227 0 62 chr6 25369596 25369693 -157045549 + L1MC4 LINE L1 6613 6703 -1339 307 264 0 66 chr6 25369662 25369768 -157045474 - L1MC4 LINE L1 -1336 6706 6608 * 354 242 0 42 chr6 25369766 25369861 -157045381 + L1MC4 LINE L1 6613 6703 -1339 345 227 0 62 chr6 25369866 25369963 -157045279 + L1MC4 LINE L1 6613 6703 -1339 345 227 0 62 chr6 25369968 25370065 -157045177 + L1MC4 LINE L1 6613 6703 -1339 308 238 0 79 chr6 25370068 25370169 -157045073 - L1MC4 LINE L1 -1336 6706 6614 363 194 0 0 chr6 25370174 25370277 -157044965 + (TA)n Simple_repeat Simple_repeat 1 103 0 229 59 0 20 chr6 25370277 25370328 -157044914 - LTR66 LTR ERVL -166 444 395 312 287 108 54 chr6 25370363 25370530 -157044712 + MIR3 SINE MIR 32 207 -1 267 242 106 53 chr6 25372052 25372184 -157043058 + LTR67 LTR ERVL 347 485 -72 41796 39 23 3 chr6 25372196 25378224 -157037018 + L1PA3 LINE L1 1 6155 0 2812 78 3 5 chr6 25378225 25378611 -157036631 + L1PA7 LINE L1 5769 6153 -1 23 54 0 0 chr6 25379077 25379114 -157036128 + AT_rich Low_complexity Low_complexity 1 37 0 260 348 25 29 chr6 25379246 25379450 -157035792 - L3 LINE CR1 -465 1112 910 1407 201 0 82 chr6 25379450 25379779 -157035463 + AluJb SINE Alu 1 302 0 1495 277 89 37 chr6 25379822 25380282 -157034960 + L1MEc LINE L1 284 719 -5677 1600 149 133 104 chr6 25380282 25380733 -157034509 - MLT1C LTR MaLR 0 467 4 1495 277 89 37 chr6 25380733 25381528 -157033714 + L1MEc LINE L1 719 1472 -4924 2161 113 0 7 chr6 25381528 25381830 -157033412 + AluSg SINE Alu 1 300 -10 1495 277 89 37 chr6 25381830 25382325 -157032917 + L1MEc LINE L1 1472 2243 -4153 * 6550 66 6 1 chr6 25382312 25383151 -157032091 - L1P LINE L1 -1848 4298 3456 2277 239 79 16 chr6 25383804 25384613 -157030629 - L1M4 LINE L1 -3159 2987 2128 7239 37 7 0 chr6 25384637 25385968 -157029274 - L1PA4 LINE L1 -1 6154 4814 * 23584 53 4 3 chr6 25385963 25389773 -157025469 + L1PA5 LINE L1 2343 6153 -1 1831 164 0 10 chr6 25390252 25390563 -157024679 + AluJb SINE Alu 2 309 -3 325 236 170 0 chr6 25390579 25390791 -157024451 + L1ME LINE L1 5561 5808 -313 220 137 39 0 chr6 25390851 25390902 -157024340 + (CA)n Simple_repeat Simple_repeat 2 54 0 1907 198 8 6 chr6 25390909 25391273 -157023969 - MLT1A1 LTR MaLR 0 365 1 414 237 179 6 chr6 25392840 25392946 -157022296 - LTR50 LTR ERVL 0 795 709 180 0 0 0 chr6 25392946 25392966 -157022276 + (CTA)n Simple_repeat Simple_repeat 1 20 0 414 237 179 6 chr6 25392966 25393032 -157022210 - LTR50 LTR ERVL -86 709 593 1258 216 56 44 chr6 25393564 25393977 -157021265 - LTR52 LTR ERVL -3 418 1 255 31 0 0 chr6 25394211 25394243 -157020999 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 303 114 59 chr6 25394560 25394623 -157020619 - HAL1b LINE L1 -439 909 851 723 85 101 47 chr6 25394623 25394752 -157020490 + MER85 DNA T2_type 3 138 -1 266 303 114 59 chr6 25394752 25395283 -157019959 - HAL1b LINE L1 -497 851 282 23 68 0 0 chr6 25396146 25396190 -157019052 + AT_rich Low_complexity Low_complexity 1 44 0 3348 194 84 10 chr6 25396190 25397101 -157018141 - L1MB7 LINE L1 -8 6674 5695 1028 136 26 0 chr6 25397105 25397260 -157017982 - AluSg/x SINE Alu -17 295 137 3470 226 51 24 chr6 25397260 25398366 -157016876 - L1MB7 LINE L1 -945 5699 4565 393 274 86 12 chr6 25398345 25398600 -157016642 - L1MB7 LINE L1 -4031 2615 2342 * 1292 260 71 11 chr6 25398690 25399140 -157016102 - L1MB7 LINE L1 -4538 2108 1632 2592 228 51 23 chr6 25399162 25399887 -157015355 - L1MB7 LINE L1 -4985 1557 813 268 286 57 23 chr6 25399892 25400067 -157015175 - L1MEd LINE L1 -5041 1078 898 408 262 152 8 chr6 25400282 25400538 -157014704 + L1ME4a LINE L1 5585 5877 -244 34 24 0 0 chr6 25402139 25402180 -157013062 + AT_rich Low_complexity Low_complexity 1 41 0 419 50 119 0 chr6 25402180 25402339 -157012903 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 0 0 0 chr6 25402339 25402360 -157012882 + AT_rich Low_complexity Low_complexity 1 21 0 458 359 36 28 chr6 25402918 25403311 -157011931 + MERVL LTR ERVL 4720 5115 -370 319 272 89 57 chr6 25403433 25403591 -157011651 + MERVL LTR ERVL 5173 5335 -319 387 299 107 0 chr6 25403660 25403837 -157011405 - L1ME LINE L1 -305 5816 5621 936 57 81 0 chr6 25404011 25404135 -157011107 - MER85 DNA T2_type 0 139 6 196 132 0 26 chr6 25404568 25404606 -157010636 + L2 LINE L2 3272 3308 -5 1868 175 105 33 chr6 25405335 25405792 -157009450 + LTR2B LTR ERV1 1 490 0 403 250 35 49 chr6 25405966 25406110 -157009132 - ERVL LTR ERVL -5061 703 562 43 56 0 0 chr6 25406978 25407049 -157008193 + AT_rich Low_complexity Low_complexity 1 71 0 429 236 19 143 chr6 25407225 25407484 -157007758 - L2 LINE L2 -2 3311 3085 1508 58 0 0 chr6 25407598 25407788 -157007454 - L1PA5 LINE L1 0 6154 5965 344 390 22 16 chr6 25407871 25408053 -157007189 + L1MEc LINE L1 268 450 -5946 2111 105 3 22 chr6 25408150 25408465 -157006777 + AluSc SINE Alu 1 309 0 194 306 159 45 chr6 25411399 25411556 -157003686 - MIR SINE MIR -80 182 8 304 362 58 11 chr6 25411737 25411911 -157003331 - MIR3 SINE MIR -9 199 18 2857 3 0 0 chr6 25412304 25412615 -157002627 - AluYa5 SINE Alu 0 311 1 222 37 0 0 chr6 25412963 25412990 -157002252 + (A)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr6 25413214 25413237 -157002005 + AT_rich Low_complexity Low_complexity 1 23 0 239 275 115 69 chr6 25413386 25413822 -157001420 + L1ME4a LINE L1 5584 6039 -82 6455 87 22 22 chr6 25413826 25414991 -157000251 - L1PA8 LINE L1 -7 6165 4993 6103 91 11 1 chr6 25414991 25415862 -156999380 + L1PA8 LINE L1 4098 4977 -1169 244 271 263 0 chr6 25416029 25416162 -156999080 - MIR SINE MIR -29 233 66 194 330 51 8 chr6 25416288 25416406 -156998836 - L2 LINE L2 -63 3250 3128 236 189 33 44 chr6 25416410 25416500 -156998742 + (CTATA)n Simple_repeat Simple_repeat 1 89 0 478 68 68 0 chr6 25416513 25416631 -156998611 + (TA)n Simple_repeat Simple_repeat 1 126 0 384 321 46 51 chr6 25416633 25416829 -156998413 + MIR SINE MIR 20 214 -48 21 36 0 0 chr6 25417730 25417758 -156997484 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr6 25417833 25417871 -156997371 + AT_rich Low_complexity Low_complexity 1 38 0 299 275 0 0 chr6 25420947 25421027 -156994215 + L1M1 LINE L1 3539 3618 -3947 226 297 14 0 chr6 25421624 25421698 -156993544 + MIR SINE MIR 21 95 -167 563 100 12 0 chr6 25423584 25423664 -156991578 + AluSc SINE Alu 4 84 -225 1070 175 37 30 chr6 25423674 25424388 -156990854 + SVA Other Other 434 703 -683 1644 104 0 0 chr6 25424508 25424719 -156990523 + AluSc SINE Alu 73 283 -26 402 261 88 106 chr6 25425618 25425947 -156989295 - L2 LINE L2 0 3313 2991 3135 98 28 0 chr6 25425983 25426452 -156988790 + L1PA13 LINE L1 5660 6141 -22 188 174 72 43 chr6 25426784 25426853 -156988389 + L2 LINE L2 2905 2975 -338 2095 102 28 7 chr6 25427190 25427474 -156987768 - AluSq SINE Alu -10 303 14 631 217 12 36 chr6 25428460 25428626 -156986616 + L1MDa LINE L1 21 182 -6358 1471 265 74 26 chr6 25428631 25429405 -156985837 + L1M1 LINE L1 4631 5453 -2112 2229 107 7 7 chr6 25429405 25429713 -156985529 - AluSx SINE Alu -4 308 1 1471 265 74 26 chr6 25429713 25429814 -156985428 + L1M1 LINE L1 5453 5548 -2017 1078 129 10 10 chr6 25429825 25430018 -156985224 + L1PB1 LINE L1 3 195 -6668 12492 194 46 12 chr6 25430022 25433502 -156981740 + L1PB1 LINE L1 635 4541 -2326 2278 106 0 13 chr6 25433502 25433813 -156981429 + AluSg SINE Alu 1 307 -3 12492 194 46 12 chr6 25433813 25436223 -156979019 + L1PB1 LINE L1 4541 6867 0 3146 228 73 20 chr6 25436278 25438101 -156977141 + L1MD1 LINE L1 5546 7458 -203 2358 92 0 0 chr6 25438103 25438398 -156976844 + AluSx SINE Alu 1 295 -17 27 81 0 0 chr6 25439228 25439290 -156975952 + AT_rich Low_complexity Low_complexity 1 62 0 512 284 17 0 chr6 25440056 25440232 -156975010 + (CA)n Simple_repeat Simple_repeat 2 180 0 398 240 6 0 chr6 25440269 25440440 -156974802 + (CA)n Simple_repeat Simple_repeat 2 173 0 201 361 52 31 chr6 25440470 25440661 -156974581 + L2 LINE L2 2551 2745 -569 1872 126 11 3 chr6 25440664 25440950 -156974292 + L1PA15 LINE L1 5860 6147 -18 369 233 71 4 chr6 25441802 25441907 -156973335 + L1ME4a LINE L1 5493 5583 -538 186 43 0 0 chr6 25441965 25441988 -156973254 + (CA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr6 25442048 25442077 -156973165 + AT_rich Low_complexity Low_complexity 1 29 0 344 296 61 15 chr6 25442155 25442287 -156972955 + L1ME4a LINE L1 5927 6064 -57 230 247 47 47 chr6 25444018 25444103 -156971139 + MIR SINE MIR 68 152 -56 347 0 23 0 chr6 25444551 25444594 -156970648 + (CA)n Simple_repeat Simple_repeat 2 45 0 689 185 7 15 chr6 25444680 25444815 -156970427 + AluJb SINE Alu 1 134 -178 180 0 0 0 chr6 25444837 25444857 -156970385 + (TA)n Simple_repeat Simple_repeat 2 21 0 220 351 123 18 chr6 25445033 25445204 -156970038 + MIR3 SINE MIR 14 202 -6 194 333 29 0 chr6 25445164 25445233 -156970009 + L2 LINE L2 651 721 -2593 * 793 253 93 8 chr6 25446306 25446563 -156968679 - MLT1C LTR MaLR 0 467 189 2410 87 6 3 chr6 25446608 25446919 -156968323 - AluSx SINE Alu 0 312 1 214 400 11 11 chr6 25446937 25447032 -156968210 - MIR SINE MIR -152 110 16 249 333 0 14 chr6 25447313 25447385 -156967857 + L2 LINE L2 3151 3221 -51 314 325 84 18 chr6 25447448 25447614 -156967628 - MIR SINE MIR -35 227 51 474 294 7 0 chr6 25448483 25448629 -156966613 - MIR SINE MIR -33 229 83 243 310 10 0 chr6 25448816 25448916 -156966326 - LTR33 LTR ERVL -53 468 368 1986 135 3 52 chr6 25449118 25449444 -156965798 + AluSx SINE Alu 1 310 -2 297 284 17 52 chr6 25451421 25451537 -156963705 - MIR SINE MIR -59 203 92 604 323 65 4 chr6 25454654 25454886 -156960356 + MIR SINE MIR 3 248 -14 1108 233 37 18 chr6 25455321 25455647 -156959595 + L1M1 LINE L1 16 347 -7218 283 350 62 46 chr6 25455709 25455903 -156959339 - L2 LINE L2 -87 3185 2989 725 251 92 26 chr6 25457160 25457431 -156957811 - MER110 LTR ERV1 -37 454 166 227 198 10 109 chr6 25457507 25457608 -156957634 - MER110A LTR ERV1 -298 170 80 289 208 247 0 chr6 25458076 25458153 -156957089 + L2 LINE L2 3176 3271 -1 298 391 0 0 chr6 25458294 25458404 -156956838 - L2 LINE L2 -1 3271 3162 242 319 0 11 chr6 25458426 25458520 -156956722 + (CCA)n Simple_repeat Simple_repeat 3 95 0 184 254 104 30 chr6 25458636 25458703 -156956539 - MER5A DNA MER1_type -109 80 9 1518 222 88 49 chr6 25459618 25460104 -156955138 - MLT1D LTR MaLR 0 505 1 23 78 0 0 chr6 25460184 25460235 -156955007 + AT_rich Low_complexity Low_complexity 1 51 0 1471 173 29 0 chr6 25461832 25462144 -156953098 + L1 LINE L1 4375 4695 -1451 573 100 0 0 chr6 25462146 25462236 -156953006 - Tigger5 DNA MER2_type -182 2141 2052 471 162 51 8 chr6 25462243 25462360 -156952882 - L1MC3 LINE L1 -11 7774 7653 2213 187 29 65 chr6 25462369 25462926 -156952316 - L1MC3 LINE L1 -850 6935 6399 9725 139 47 8 chr6 25462977 25463774 -156951468 + Tigger1 DNA MER2_type 128 893 -1525 2049 126 27 7 chr6 25463774 25464075 -156951167 - AluSx SINE Alu -5 307 1 9725 139 47 8 chr6 25464075 25465050 -156950192 + Tigger1 DNA MER2_type 893 1968 -450 1243 163 19 31 chr6 25465056 25465313 -156949929 + Tigger1 DNA MER2_type 2165 2418 0 1862 169 75 73 chr6 25465326 25465975 -156949267 - L1MC3 LINE L1 -1421 6364 5661 * 2180 298 85 53 chr6 25465970 25466944 -156948298 - L1MEc LINE L1 -1459 4756 3730 3637 74 118 4 chr6 25466944 25467487 -156947755 + LTR14B LTR ERVK 4 608 0 2180 298 85 53 chr6 25467487 25467794 -156947448 - L1MEc LINE L1 -2485 3730 3434 334 252 41 14 chr6 25467801 25467948 -156947294 - L1MEc LINE L1 -3146 3069 2919 958 251 78 17 chr6 25467958 25468512 -156946730 - L1MEc LINE L1 -3504 2711 2170 1960 208 26 9 chr6 25468822 25469249 -156945993 + Tigger2a DNA MER2_type 1 434 0 192 298 0 0 chr6 25469449 25469496 -156945746 - MIR SINE MIR -120 142 96 21 36 0 0 chr6 25470310 25470338 -156944904 + AT_rich Low_complexity Low_complexity 1 28 0 226 169 108 0 chr6 25470741 25470806 -156944436 - MLT1A1 LTR MaLR 0 396 325 32 0 0 0 chr6 25470816 25470848 -156944394 + AT_rich Low_complexity Low_complexity 1 32 0 856 237 82 40 chr6 25470855 25471159 -156944083 - MLT1A1 LTR MaLR -48 317 1 238 308 112 50 chr6 25471159 25471481 -156943761 + HAL1 LINE L1 97 438 -2069 1050 213 43 5 chr6 25471510 25471971 -156943271 + MLT1E2 LTR MaLR 74 623 -3 397 208 138 138 chr6 25472378 25472705 -156942537 + HAL1 LINE L1 1075 1401 -1106 5380 109 43 37 chr6 25473927 25475557 -156939685 - L1PA10 LINE L1 -16 6152 4525 676 160 100 7 chr6 25475557 25475707 -156939535 + L1PA13 LINE L1 1973 2136 -4651 1391 57 62 0 chr6 25475829 25476021 -156939221 - L1PA4 LINE L1 -8 6147 5944 283 327 129 0 chr6 25477047 25477148 -156938094 - MIR SINE MIR -78 130 17 1002 213 253 26 chr6 25478023 25478076 -156937166 + MLT1A2 LTR MaLR 1 41 -333 3036 162 34 42 chr6 25478076 25478693 -156936549 - LTR9 LTR ERV1 0 612 1 1002 213 253 26 chr6 25478693 25478944 -156936298 + MLT1A2 LTR MaLR 41 374 0 192 97 0 0 chr6 25481069 25481100 -156934142 + (TC)n Simple_repeat Simple_repeat 1 31 0 329 244 111 76 chr6 25481182 25481354 -156933888 - MER5B DNA MER1_type 0 178 1 2438 47 0 20 chr6 25481463 25481762 -156933480 + AluY SINE Alu 1 293 -18 1118 224 65 78 chr6 25482113 25482546 -156932696 + LTR37B LTR ERV1 9 435 -33 2174 150 19 6 chr6 25482593 25482952 -156932290 - THE1B LTR MaLR 0 364 1 1780 164 10 7 chr6 25483867 25484160 -156931082 + AluSx SINE Alu 1 294 -18 402 286 72 27 chr6 25485947 25486153 -156929089 + MLT1G LTR MaLR 42 258 -332 1488 198 40 3 chr6 25486863 25487161 -156928081 + AluJo SINE Alu 1 309 -3 278 268 114 0 chr6 25487885 25488008 -156927234 - Charlie7 DNA MER1_type -2475 137 1 702 259 74 0 chr6 25488016 25488205 -156927037 + MER58A DNA MER1_type 1 203 -21 925 212 0 0 chr6 25488258 25488423 -156926819 + FAM SINE Alu 3 167 -8 270 266 106 80 chr6 25488664 25488800 -156926442 + MIR SINE MIR 3 147 -115 2150 126 0 0 chr6 25488800 25489093 -156926149 + AluSx SINE Alu 1 293 -19 270 266 106 80 chr6 25489093 25489155 -156926087 + MIR SINE MIR 147 206 -56 21 0 0 0 chr6 25489163 25489184 -156926058 + AT_rich Low_complexity Low_complexity 1 21 0 1228 244 74 65 chr6 25489494 25489954 -156925288 + MLT1C LTR MaLR 1 464 -3 204 309 0 15 chr6 25490812 25490880 -156924362 + GA-rich Low_complexity Low_complexity 2 68 0 2300 178 79 5 chr6 25492516 25492583 -156922659 - MER70B LTR ERVL -102 476 415 585 28 0 0 chr6 25492583 25492654 -156922588 + (CA)n Simple_repeat Simple_repeat 1 71 0 2300 178 79 5 chr6 25492654 25493029 -156922213 - MER70B LTR ERVL -163 415 1 357 220 69 27 chr6 25493221 25493361 -156921881 - MLT1I LTR MaLR -19 428 293 585 69 0 0 chr6 25493387 25493474 -156921768 + (CA)n Simple_repeat Simple_repeat 2 88 0 252 296 80 75 chr6 25494204 25494430 -156920812 - MIR SINE MIR -2 260 34 1508 185 109 3 chr6 25494705 25495035 -156920207 - MLT1A1 LTR MaLR 0 365 1 2230 111 0 22 chr6 25495712 25496027 -156919215 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr6 25496125 25496146 -156919096 + AT_rich Low_complexity Low_complexity 1 21 0 265 304 65 77 chr6 25496384 25496552 -156918690 - MIR SINE MIR -73 189 24 1965 121 0 65 chr6 25496781 25497103 -156918139 + AluSx SINE Alu 1 301 -11 1719 194 90 29 chr6 25497837 25497894 -156917348 - Charlie1b DNA MER1_type -2238 523 471 2161 99 0 33 chr6 25497894 25498197 -156917045 + AluSg SINE Alu 1 293 -17 1719 194 90 29 chr6 25498197 25498630 -156916612 - Charlie1b DNA MER1_type -2290 471 3 266 286 126 8 chr6 25498764 25498883 -156916359 + MIR SINE MIR 52 184 -78 607 240 0 0 chr6 25499555 25499676 -156915566 - L1ME LINE L1 -393 5777 5657 239 132 26 0 chr6 25499699 25499737 -156915505 + MER8 DNA MER2_type 3 41 -198 873 181 154 0 chr6 25499754 25499942 -156915300 + MER2 DNA MER2_type 128 344 -1 440 259 19 4 chr6 25499955 25500071 -156915171 - L1ME LINE L1 -545 5625 5512 10337 172 65 4 chr6 25500286 25502672 -156912570 + L1MA8 LINE L1 3060 5585 -727 1157 156 72 13 chr6 25502673 25503021 -156912221 - MSTA LTR MaLR 0 428 1 3704 162 29 11 chr6 25503021 25503714 -156911528 + L1MA8 LINE L1 5582 6286 -5 429 180 20 30 chr6 25503898 25503998 -156911244 + MER5A DNA MER1_type 13 111 -78 280 301 60 0 chr6 25504632 25504715 -156910527 - MER91C DNA MER1_type -15 125 38 24 0 0 0 chr6 25505451 25505475 -156909767 + AT_rich Low_complexity Low_complexity 1 24 0 827 271 75 16 chr6 25505687 25505942 -156909300 - MLT1D LTR MaLR -192 313 44 197 303 53 26 chr6 25506077 25506153 -156909089 - L2 LINE L2 -15 3257 3180 994 195 0 48 chr6 25506214 25506424 -156908818 - MLT1D LTR MaLR -305 200 1 410 200 0 0 chr6 25507222 25507302 -156907940 - L1ME LINE L1 -453 5668 5589 480 188 0 0 chr6 25507444 25507524 -156907718 + MER82 DNA MER2_type 1 80 -573 3911 227 42 4 chr6 25507710 25508733 -156906509 + L1P LINE L1 2601 3662 -2484 458 43 0 72 chr6 25509422 25509491 -156905751 + MER53 DNA DNA 2 65 -124 2036 127 0 3 chr6 25510320 25510604 -156904638 - AluSc SINE Alu -26 283 1 1206 178 35 5 chr6 25511066 25511268 -156903974 + AluJo SINE Alu 2 209 -103 447 19 0 0 chr6 25511280 25511332 -156903910 + (A)n Simple_repeat Simple_repeat 1 52 0 261 353 69 0 chr6 25512474 25512576 -156902666 + MIR3 SINE MIR 73 181 -27 368 288 63 37 chr6 25513472 25513552 -156901690 - L1ME3A LINE L1 -10 6160 6084 1160 227 174 78 chr6 25513552 25514093 -156901149 + MLT1E LTR MaLR 1 593 0 368 288 63 37 chr6 25514093 25514203 -156901039 - L1ME3A LINE L1 -86 6084 5965 710 284 64 25 chr6 25514313 25514652 -156900590 - L1ME3A LINE L1 -264 5898 5553 251 297 0 0 chr6 25515495 25515559 -156899683 - MLT1J2 LTR MaLR -120 330 267 239 226 97 40 chr6 25515736 25515860 -156899382 + L1MB1 LINE L1 3550 3680 -2466 * 3417 200 71 55 chr6 25515837 25516665 -156898577 + L1MB1 LINE L1 4150 4963 -1203 2103 4 0 0 chr6 25516665 25516891 -156898351 + AluY SINE Alu 86 311 0 3417 200 71 55 chr6 25516891 25516945 -156898297 + L1MB1 LINE L1 4963 5015 -1151 2222 123 0 0 chr6 25516945 25517255 -156897987 + AluSg SINE Alu 1 310 0 3417 200 71 55 chr6 25517255 25517308 -156897934 + L1MB1 LINE L1 5015 5066 -1100 2191 118 7 0 chr6 25517308 25517612 -156897630 + AluSg SINE Alu 1 306 -4 3417 200 71 55 chr6 25517612 25518572 -156896670 + L1MB1 LINE L1 5066 6148 -18 2187 100 3 0 chr6 25518715 25519004 -156896238 - AluSp SINE Alu -8 305 16 272 239 0 76 chr6 25520969 25521061 -156894181 + MIR SINE MIR 49 133 -75 324 256 38 53 chr6 25521468 25521601 -156893641 - MIR SINE MIR -46 216 86 452 312 29 23 chr6 25521760 25521933 -156893309 + MIR SINE MIR 56 229 -33 25 51 0 0 chr6 25522093 25522132 -156893110 + AT_rich Low_complexity Low_complexity 1 39 0 235 382 31 11 chr6 25522456 25522647 -156892595 - MIR3 SINE MIR -9 199 5 381 254 117 65 chr6 25524592 25524681 -156890561 + MIR SINE MIR 23 106 -156 1847 122 47 0 chr6 25524681 25524959 -156890283 - AluSx SINE Alu -21 291 1 381 254 117 65 chr6 25524959 25525098 -156890144 + MIR SINE MIR 106 258 -4 788 193 53 48 chr6 25525205 25525392 -156889850 - MER5A DNA MER1_type -1 188 1 182 207 241 0 chr6 25527181 25527239 -156888003 - L2 LINE L2 -19 3294 3223 342 362 69 28 chr6 25527403 25527621 -156887621 + L2 LINE L2 2860 3086 -186 212 304 116 58 chr6 25527702 25527840 -156887402 - L2 LINE L2 -10 3303 3158 288 277 198 0 chr6 25528912 25529013 -156886229 + L2 LINE L2 3188 3308 -5 375 291 55 0 chr6 25529207 25529334 -156885908 - MIR SINE MIR 0 262 129 353 310 23 47 chr6 25529794 25529819 -156885423 + MIR3 SINE MIR 50 74 -134 2202 109 21 47 chr6 25529819 25530204 -156885038 - THE1C LTR MaLR 0 375 1 353 310 23 47 chr6 25530204 25530307 -156884935 + MIR3 SINE MIR 74 175 -33 1688 71 0 9 chr6 25530880 25531090 -156884152 + AluSg/x SINE Alu 83 290 -20 487 303 17 0 chr6 25531098 25531217 -156884025 + MIR3 SINE MIR 36 156 -52 1833 217 25 60 chr6 25531887 25532403 -156882839 - MLT1D LTR MaLR -7 498 1 404 328 49 0 chr6 25532403 25532525 -156882717 + L2 LINE L2 3183 3310 -3 3411 111 25 25 chr6 25532571 25532612 -156882630 - Tigger1 DNA MER2_type -180 2238 2198 2428 61 3 13 chr6 25532612 25532924 -156882318 + AluY SINE Alu 2 310 -1 3411 111 25 25 chr6 25532924 25533432 -156881810 - Tigger1 DNA MER2_type -219 2199 1689 5561 142 18 15 chr6 25533432 25534879 -156880363 - L1PB3 LINE L1 0 6154 4751 1533 233 72 38 chr6 25534971 25535418 -156879824 - MLT1C LTR MaLR 0 467 6 194 278 0 19 chr6 25536610 25536664 -156878578 + L2 LINE L2 3218 3270 -2 6320 128 42 34 chr6 25538065 25538324 -156876918 + HSMAR2 DNA Mariner 1 256 -1046 787 188 88 0 chr6 25538324 25538484 -156876758 + FAM SINE Alu 1 174 -1 6320 128 42 34 chr6 25538484 25539329 -156875913 + HSMAR2 DNA Mariner 256 1115 -187 3362 124 6 0 chr6 25539334 25539841 -156875401 + L1PA10 LINE L1 3906 4415 -1731 4559 97 8 1 chr6 25541490 25542278 -156872964 + L1PA10 LINE L1 5100 5891 -277 30 27 0 0 chr6 25542626 25542663 -156872579 + AT_rich Low_complexity Low_complexity 1 37 0 185 116 0 47 chr6 25542835 25542878 -156872364 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 440 272 82 49 chr6 25543126 25543713 -156871529 - L1PB3 LINE L1 -2165 3981 3370 1673 184 10 26 chr6 25544390 25544699 -156870543 - AluJo SINE Alu -8 304 1 1617 130 86 51 chr6 25544716 25545008 -156870234 - AluSx SINE Alu -8 304 3 410 237 79 13 chr6 25545089 25545241 -156870001 - MER103 DNA DNA -1 165 4 250 327 53 9 chr6 25546251 25546364 -156868878 + MIR SINE MIR 133 250 -12 238 280 10 40 chr6 25546680 25546780 -156868462 - MIR SINE MIR -60 202 106 359 234 64 0 chr6 25547227 25547321 -156867921 + MER110 LTR ERV1 1 100 -391 1539 204 33 25 chr6 25547369 25547761 -156867481 + MER110 LTR ERV1 78 472 -19 452 284 104 35 chr6 25547995 25548196 -156867046 - MIR SINE MIR -26 236 22 477 252 8 65 chr6 25548414 25548537 -156866705 + L1MC/D LINE L1 5496 5614 -556 22 0 0 0 chr6 25548881 25548903 -156866339 + AT_rich Low_complexity Low_complexity 1 22 0 470 298 120 11 chr6 25549734 25549925 -156865317 - MIR SINE MIR -15 247 36 2180 99 3 0 chr6 25549962 25550285 -156864957 + AluSp SINE Alu 1 324 0 2146 89 0 17 chr6 25551372 25551663 -156863579 - AluSx SINE Alu -6 306 21 261 267 0 92 chr6 25552144 25552264 -156862978 - MARNA DNA Mariner -223 363 255 336 229 129 14 chr6 25552759 25552899 -156862343 - L1ME4a LINE L1 -2 6119 5964 665 56 0 0 chr6 25553188 25553277 -156861965 + L1PA3 LINE L1 6067 6155 0 383 0 0 21 chr6 25553334 25553382 -156861860 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 422 226 16 48 chr6 25553960 25554084 -156861158 - MER112 DNA MER1_type -8 252 133 1107 213 25 99 chr6 25554464 25554858 -156860384 - MLT1A1 LTR MaLR 0 365 1 2425 97 0 0 chr6 25556477 25556785 -156858457 + AluSx SINE Alu 1 308 -4 7332 37 0 0 chr6 25558908 25560136 -156855106 - L1PA4 LINE L1 0 6155 4926 8258 173 27 110 chr6 25560136 25562323 -156852919 + L1PB1 LINE L1 2478 4845 -1306 459 0 0 0 chr6 25562323 25562374 -156852868 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 8258 173 27 110 chr6 25562374 25563458 -156851784 + L1PB1 LINE L1 4845 6017 -134 589 101 0 0 chr6 25563458 25563547 -156851695 + Alu SINE Alu 222 310 0 8258 173 27 110 chr6 25563547 25563842 -156851400 + L1PB1 LINE L1 6017 5770 -381 270 0 0 0 chr6 25563842 25563872 -156851370 + (CA)n Simple_repeat Simple_repeat 2 31 0 8258 173 27 110 chr6 25563872 25564171 -156851071 + L1PB1 LINE L1 5769 6091 -60 1071 248 0 7 chr6 25564175 25564474 -156850768 + L1P LINE L1 4862 5158 -988 290 93 19 0 chr6 25564495 25564549 -156850693 + L1PB2 LINE L1 6097 6151 0 32 0 0 0 chr6 25564549 25564581 -156850661 + AT_rich Low_complexity Low_complexity 1 32 0 28 71 0 0 chr6 25564618 25564674 -156850568 + AT_rich Low_complexity Low_complexity 1 56 0 2410 100 31 19 chr6 25564815 25565175 -156850067 - THE1B LTR MaLR 0 364 1 578 139 20 8 chr6 25565241 25565362 -156849880 + L1MB8 LINE L1 5833 5955 -213 2448 140 74 0 chr6 25565378 25565785 -156849457 + Tigger2 DNA MER2_type 2280 2716 -2 988 164 11 98 chr6 25565788 25566063 -156849179 + L1MB8 LINE L1 5923 6173 -5 22 0 0 0 chr6 25567063 25567085 -156848157 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr6 25568926 25568951 -156846291 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr6 25568992 25569044 -156846198 + (TTTTA)n Simple_repeat Simple_repeat 1 52 0 1631 186 18 4 chr6 25569045 25569320 -156845922 - AluJo SINE Alu -33 279 1 232 183 14 14 chr6 25569345 25569416 -156845826 + L1ME4a LINE L1 6029 6099 -22 187 358 53 0 chr6 25569872 25569967 -156845275 + MIR SINE MIR 45 144 -64 2066 160 92 2 chr6 25573210 25573603 -156841639 - MSTB1 LTR MaLR 0 432 5 250 326 34 0 chr6 25573683 25573772 -156841470 - MIR SINE MIR -4 258 167 549 304 91 32 chr6 25573828 25574048 -156841194 + MER115 DNA AcHobo 19 251 -442 28 61 0 0 chr6 25574309 25574358 -156840884 + AT_rich Low_complexity Low_complexity 1 49 0 794 192 113 35 chr6 25575097 25575300 -156839942 + MER20 DNA MER1_type 1 219 0 255 238 30 15 chr6 25575570 25575654 -156839588 - MIR SINE MIR -62 146 64 203 330 124 41 chr6 25576619 25576716 -156838526 - L3 LINE CR1 -69 1508 1404 2282 118 41 8 chr6 25579286 25579649 -156835593 + THE1C LTR MaLR 1 375 0 742 136 40 96 chr6 25579888 25580087 -156835155 + MER53 DNA DNA 2 189 0 2271 183 25 13 chr6 25580745 25581216 -156834026 + L1MB4 LINE L1 5587 6063 -117 2174 136 19 27 chr6 25581911 25582278 -156832964 + THE1B LTR MaLR 1 364 0 364 312 127 9 chr6 25582313 25582534 -156832708 - MIR SINE MIR -14 248 2 348 348 33 16 chr6 25582582 25582766 -156832476 - MIR SINE MIR -56 206 20 320 194 111 37 chr6 25582856 25582964 -156832278 + MER94 DNA DNA 1 116 -18 1267 88 0 0 chr6 25583068 25583227 -156832015 - AluY SINE Alu -6 305 147 366 348 33 16 chr6 25583780 25583964 -156831278 - MIR SINE MIR -56 206 20 320 194 111 37 chr6 25584054 25584162 -156831080 + MER94 DNA DNA 1 116 -18 2244 108 0 7 chr6 25584266 25584573 -156830669 - AluY SINE Alu -6 305 1 1338 62 6 0 chr6 25584573 25584752 -156830490 - L1P3 LINE L1 -681 5491 5312 4482 63 9 0 chr6 25584752 25585323 -156829919 + L1PA7 LINE L1 5569 6147 -7 1819 182 0 10 chr6 25585520 25585827 -156829415 - AluJb SINE Alu -8 304 1 810 205 48 0 chr6 25585833 25585999 -156829243 + MER58B DNA MER1_type 168 341 0 218 287 69 11 chr6 25586222 25586309 -156828933 + MIR SINE MIR 170 261 -1 513 345 64 16 chr6 25587879 25588128 -156827114 - MIR SINE MIR 0 262 2 230 326 163 0 chr6 25588417 25588509 -156826733 - MIR SINE MIR -109 153 47 215 225 0 0 chr6 25589543 25589583 -156825659 + (CA)n Simple_repeat Simple_repeat 1 40 0 253 319 0 0 chr6 25590218 25590290 -156824952 - L2 LINE L2 0 3272 3201 283 167 14 14 chr6 25591080 25591152 -156824090 + CT-rich Low_complexity Low_complexity 4 75 0 186 299 78 13 chr6 25591156 25591233 -156824009 - L2 LINE L2 -5 3308 3227 2028 130 16 41 chr6 25593014 25593382 -156821860 + THE1B LTR MaLR 4 362 -2 1964 96 48 7 chr6 25593783 25594073 -156821169 + AluSq SINE Alu 3 303 0 240 310 38 28 chr6 25594076 25594289 -156820953 + HAL1b LINE L1 76 290 -1058 1880 129 59 0 chr6 25594455 25594742 -156820500 + AluSx SINE Alu 1 304 -8 340 302 36 14 chr6 25594838 25594977 -156820265 + L1M4 LINE L1 2923 3064 -3082 305 278 60 60 chr6 25595362 25595513 -156819729 + L1M4 LINE L1 4894 5044 -1102 242 192 0 55 chr6 25596503 25596576 -156818666 + CT-rich Low_complexity Low_complexity 3 71 0 21 0 0 0 chr6 25596980 25597001 -156818241 + AT_rich Low_complexity Low_complexity 1 21 0 527 218 20 0 chr6 25598637 25598738 -156816504 - AluJb SINE Alu -90 222 120 1070 48 5 53 chr6 25598738 25598927 -156816315 + (TTC)n Simple_repeat Simple_repeat 1 180 0 510 112 25 37 chr6 25598929 25599090 -156816152 + CT-rich Low_complexity Low_complexity 1 159 0 261 127 16 32 chr6 25599313 25599376 -156815866 + (TA)n Simple_repeat Simple_repeat 1 62 0 236 246 0 41 chr6 25599382 25599504 -156815738 + L1MC4 LINE L1 1995 6983 -1339 341 273 23 0 chr6 25599524 25599612 -156815630 + L1MC4 LINE L1 6614 6703 -1339 231 247 47 0 chr6 25599621 25599706 -156815536 + L1MC4 LINE L1 6615 6703 -1339 225 253 72 0 chr6 25599650 25599733 -156815509 - L1MC4 LINE L1 -1339 6703 6615 * 296 143 18 0 chr6 25599738 25599794 -156815448 + (TA)n Simple_repeat Simple_repeat 1 57 0 241 261 11 33 chr6 25599796 25599888 -156815354 + L1MC4 LINE L1 6614 6703 -1339 249 244 11 22 chr6 25599892 25599982 -156815260 + L1MC4 LINE L1 6614 6702 -1340 225 154 0 0 chr6 25599986 25600025 -156815217 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr6 25600054 25600082 -156815160 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 25600102 25600131 -156815111 + AT_rich Low_complexity Low_complexity 1 29 0 569 281 72 18 chr6 25600246 25600473 -156814769 - MIR SINE MIR -2 260 20 472 251 60 65 chr6 25601150 25601536 -156813706 + L1MC5 LINE L1 7552 7935 -26 895 223 27 5 chr6 25601949 25602137 -156813105 - MIR SINE MIR -56 206 15 757 188 91 34 chr6 25602138 25602314 -156812928 + MLT2B3 LTR ERVL 1 186 -368 723 58 0 33 chr6 25602314 25602435 -156812807 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 1931 123 21 7 chr6 25602535 25602819 -156812423 - AluSq SINE Alu -25 288 1 3789 196 85 18 chr6 25602819 25603484 -156811758 - L1P LINE L1 -784 5362 4620 2593 62 0 0 chr6 25603484 25603791 -156811451 + AluY SINE Alu 1 307 -4 3789 196 85 18 chr6 25603791 25604017 -156811225 - L1P LINE L1 -1526 4620 4411 237 33 0 0 chr6 25604529 25604559 -156810683 + (CA)n Simple_repeat Simple_repeat 1 30 0 296 270 22 0 chr6 25604632 25604721 -156810521 + MIR SINE MIR 172 262 0 291 336 90 0 chr6 25604855 25604977 -156810265 - MIR SINE MIR -89 173 41 181 284 12 49 chr6 25605062 25605143 -156810099 - L2 LINE L2 -181 3091 3014 195 294 92 55 chr6 25605285 25605394 -156809848 - L2 LINE L2 -1 3312 3200 1169 207 46 65 chr6 25605505 25605877 -156809365 + MLT1A1 LTR MaLR 1 365 0 512 286 49 27 chr6 25606526 25606711 -156808531 - MIR SINE MIR -44 218 30 239 290 0 16 chr6 25606780 25606850 -156808392 + MIR SINE MIR 41 108 -103 1353 28 22 22 chr6 25607675 25607712 -156807530 + (TTC)n Simple_repeat Simple_repeat 1 394 0 1353 28 22 22 chr6 25607712 25608069 -156807173 + (TTC)n Simple_repeat Simple_repeat 1 357 0 727 153 8 0 chr6 25608114 25608232 -156807010 - FLAM_C SINE Alu -19 124 6 603 270 83 24 chr6 25608338 25608746 -156806496 - L1ME LINE L1 -590 5506 5080 579 291 162 11 chr6 25608761 25609194 -156806048 - L1ME LINE L1 -1038 5042 4545 347 271 14 19 chr6 25609207 25609414 -156805828 - L1MDb LINE L1 -5103 967 761 330 365 28 86 chr6 25609987 25610084 -156805158 - L1MDb LINE L1 -5608 462 361 2299 122 16 24 chr6 25610084 25610461 -156804781 - THE1C LTR MaLR 0 375 2 330 365 28 86 chr6 25610461 25610689 -156804553 - L1MDb LINE L1 -5709 361 156 186 393 0 17 chr6 25610737 25610854 -156804388 - MIR3 SINE MIR -6 202 88 504 303 142 31 chr6 25611588 25611912 -156803330 + MLT1J2 LTR MaLR 1 360 -90 1136 279 81 29 chr6 25611942 25612173 -156803069 - L1M4 LINE L1 -1793 4353 4136 2268 86 10 3 chr6 25612173 25612476 -156802766 - AluSc SINE Alu -4 305 1 1136 279 81 29 chr6 25612476 25612797 -156802445 - L1M4 LINE L1 -2010 4136 3772 826 102 60 6 chr6 25612824 25612991 -156802251 - L1MA7 LINE L1 0 6291 6116 905 116 129 0 chr6 25613022 25613169 -156802073 - LTR18B LTR ERVL -6 608 443 1052 62 0 8 chr6 25613206 25613335 -156801907 - AluSp/q SINE Alu -30 283 156 2000 128 89 78 chr6 25613337 25613784 -156801458 - LTR18B LTR ERVL -162 452 1 4001 153 51 77 chr6 25613784 25615349 -156799893 - L1MA7 LINE L1 -173 6118 4595 857 120 12 36 chr6 25615339 25615413 -156799829 - L1 LINE L1 -1358 4788 4715 * 16495 165 39 9 chr6 25615413 25621797 -156793445 - L1PA16 LINE L1 -302 6580 1 266 164 49 16 chr6 25621806 25621867 -156793375 - L1MA7 LINE L1 -112 6179 6117 806 284 107 16 chr6 25621880 25622500 -156792742 - L1M4 LINE L1 -2502 3644 2956 208 297 161 17 chr6 25624303 25624421 -156790821 - MIR SINE MIR -40 222 88 23 0 8 0 chr6 25624571 25624631 -156790611 + AT_rich Low_complexity Low_complexity 1 23 0 7564 15 0 0 chr6 25624683 25625550 -156789692 - L1PA2 LINE L1 -2 6153 5287 335 333 64 40 chr6 25625604 25625853 -156789389 - L1MC4 LINE L1 -141 7901 7647 520 325 177 20 chr6 25625857 25626162 -156789080 - L2 LINE L2 -41 3272 2920 819 201 49 22 chr6 25627076 25627260 -156787982 - MER5A DNA MER1_type 0 189 1 3484 117 13 19 chr6 25628301 25628831 -156786411 + MER1A DNA MER1_type 1 527 0 2241 94 7 10 chr6 25628871 25629178 -156786064 + AluY SINE Alu 3 308 -3 568 254 48 0 chr6 25629454 25629619 -156785623 + MER112 DNA MER1_type 81 253 -7 422 297 128 0 chr6 25630478 25630675 -156784567 - MIR SINE MIR 0 262 41 279 79 0 0 chr6 25631517 25631555 -156783687 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1489 163 30 54 chr6 25631581 25631913 -156783329 + MLT2B3 LTR ERVL 223 546 -8 2111 86 4 7 chr6 25632291 25632569 -156782673 + AluSq SINE Alu 37 313 0 1854 243 34 11 chr6 25635171 25635789 -156779453 + L1M4 LINE L1 4215 4846 -1300 203 357 42 14 chr6 25635815 25635958 -156779284 - L3b LINE CR1 -173 1410 1264 268 345 12 0 chr6 25635992 25636076 -156779166 - MIR3 SINE MIR -46 162 78 198 0 0 0 chr6 25636103 25636125 -156779117 + (ACTG)n Simple_repeat Simple_repeat 1 22 0 4493 133 16 29 chr6 25636220 25637010 -156778232 - L1MA5 LINE L1 -6 6294 5515 198 0 0 0 chr6 25637297 25637319 -156777923 + (A)n Simple_repeat Simple_repeat 1 22 0 5872 61 9 0 chr6 25637354 25638104 -156777138 - L1PA8 LINE L1 -3 6169 5413 709 354 100 31 chr6 25638464 25639391 -156775851 - L2 LINE L2 -58 3255 2255 566 335 131 44 chr6 25639496 25639575 -156775667 + L3 LINE CR1 62 133 -1444 2253 109 7 0 chr6 25639575 25639879 -156775363 + AluSc SINE Alu 1 306 -3 566 335 131 44 chr6 25639879 25640256 -156774986 + L3 LINE CR1 133 558 -1019 473 176 5 186 chr6 25640302 25640512 -156774730 + MER20 DNA MER1_type 43 214 -5 216 333 0 0 chr6 25640747 25640810 -156774432 + MIR3 SINE MIR 101 163 -45 1356 241 126 28 chr6 25640813 25641273 -156773969 + MLT1D LTR MaLR 1 505 0 4111 217 27 80 chr6 25641273 25641376 -156773866 + MLT1D-int LTR MaLR 1 108 -1263 942 230 178 43 chr6 25641376 25641820 -156773422 + MLT1D LTR MaLR 1 504 -1 4111 217 27 80 chr6 25641820 25643118 -156772124 + MLT1D-int LTR MaLR 108 1217 -154 863 199 124 42 chr6 25643124 25643430 -156771812 + MLT1C LTR MaLR 135 465 -2 943 292 147 48 chr6 25643478 25644105 -156771137 + L3 LINE CR1 887 1575 -2 791 199 0 0 chr6 25644894 25645040 -156770202 + AluJb SINE Alu 1 146 -166 180 0 0 0 chr6 25645104 25645124 -156770118 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 2061 141 7 10 chr6 25645611 25645915 -156769327 + AluSx SINE Alu 1 303 -9 1965 150 0 3 chr6 25646463 25646769 -156768473 + AluJb SINE Alu 1 305 -7 926 227 12 16 chr6 25646950 25647201 -156768041 + MER76 LTR ERV 1 250 -438 906 228 25 40 chr6 25647269 25647545 -156767697 + MER76 LTR ERV 384 655 -33 332 359 61 0 chr6 25648181 25648312 -156766930 - MIR SINE MIR -111 151 13 11961 183 15 36 chr6 25648418 25648469 -156766773 - L1PB3 LINE L1 -313 5841 5790 315 0 0 0 chr6 25648469 25648504 -156766738 + (TG)n Simple_repeat Simple_repeat 2 36 0 11961 183 15 36 chr6 25648504 25649545 -156765697 - L1PB3 LINE L1 -364 5790 4728 279 78 98 0 chr6 25649545 25649596 -156765646 + MADE1 DNA Mariner 1 56 -24 11961 183 15 36 chr6 25649596 25650396 -156764846 - L1PB3 LINE L1 -1426 4728 3912 2425 87 0 0 chr6 25650396 25650707 -156764535 - AluY SINE Alu 0 311 1 11961 183 15 36 chr6 25650707 25652370 -156762872 - L1PB3 LINE L1 -2242 3912 2313 258 32 0 0 chr6 25652432 25652463 -156762779 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr6 25653632 25653657 -156761585 + (A)n Simple_repeat Simple_repeat 1 25 0 2596 50 0 0 chr6 25653657 25653957 -156761285 + AluY SINE Alu 1 300 -11 839 251 0 0 chr6 25654578 25654749 -156760493 + MER45A DNA AcHobo 1 171 -7 509 236 149 9 chr6 25654860 25655171 -156760071 + MLT1I LTR MaLR 1 409 0 2265 85 4 0 chr6 25656472 25656776 -156758466 + AluSx SINE Alu 3 307 0 193 212 0 0 chr6 25657283 25657316 -156757926 + MIR SINE MIR 1 33 -229 1854 126 32 0 chr6 25657319 25657621 -156757621 + AluSp SINE Alu 1 311 0 42488 35 0 2 chr6 25657778 25663937 -156751305 + L1PA3 LINE L1 6 6152 -3 182 37 37 0 chr6 25665268 25665295 -156749947 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 294 357 91 66 chr6 25665359 25665768 -156749474 - L2 LINE L2 -50 3222 2804 1808 144 0 11 chr6 25666107 25666417 -156748825 + AluSx SINE Alu 1 307 0 1980 202 26 32 chr6 25667233 25667699 -156747543 + MLT1C LTR MaLR 5 467 0 1870 117 8 11 chr6 25667988 25668253 -156746989 + AluSx SINE Alu 39 302 -10 206 213 43 0 chr6 25668368 25668415 -156746827 + GA-rich Low_complexity Low_complexity 4 52 0 209 305 170 7 chr6 25668866 25669007 -156746235 - MIR3 SINE MIR -6 202 39 4856 123 6 36 chr6 25669023 25669287 -156745955 - L1PA16 LINE L1 -1 6165 5895 1977 127 18 3 chr6 25669287 25669570 -156745672 + AluSx SINE Alu 1 287 -25 4856 123 6 36 chr6 25669570 25670137 -156745105 - L1PA16 LINE L1 -271 5895 5359 2213 121 0 31 chr6 25670137 25670459 -156744783 - AluSx SINE Alu 0 312 1 751 247 30 46 chr6 25670511 25670774 -156744468 + MIR SINE MIR 2 260 -2 984 161 0 29 chr6 25672355 25672529 -156742713 - AluJo SINE Alu -43 269 101 392 276 98 37 chr6 25672620 25672783 -156742459 + MIR3 SINE MIR 23 195 -13 199 381 83 32 chr6 25674192 25674470 -156740772 - L3 LINE CR1 -23 1554 1263 759 242 113 17 chr6 25674911 25675142 -156740100 - MIR SINE MIR 0 262 10 264 30 0 0 chr6 25675211 25675244 -156739998 + (CA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr6 25675549 25675585 -156739657 + (TG)n Simple_repeat Simple_repeat 2 37 0 396 300 102 55 chr6 25675872 25676326 -156738916 + HAL1 LINE L1 813 1351 -1156 1713 145 18 4 chr6 25676327 25676603 -156738639 + AluSx SINE Alu 1 280 -32 966 101 48 4 chr6 25676630 25676878 -156738364 + GA-rich Low_complexity Low_complexity 1 258 0 279 293 93 27 chr6 25676878 25677028 -156738214 + HAL1 LINE L1 1337 1496 -1011 1920 161 44 20 chr6 25677152 25677542 -156737700 + L1PA7 LINE L1 5756 6154 0 2086 146 41 33 chr6 25677916 25678278 -156736964 - MLT1A1 LTR MaLR 0 365 1 307 257 134 32 chr6 25678404 25678455 -156736787 + HAL1 LINE L1 2224 2268 -239 1960 126 13 33 chr6 25678455 25678756 -156736486 + AluJb SINE Alu 1 295 -17 307 257 134 32 chr6 25678756 25678891 -156736351 + HAL1 LINE L1 2268 2429 -78 234 288 106 0 chr6 25679065 25679131 -156736111 - L2 LINE L2 -219 3053 2981 355 306 6 38 chr6 25679197 25679357 -156735885 - L2 LINE L2 -290 2982 2828 520 301 109 18 chr6 25680532 25680761 -156734481 - MIR SINE MIR -1 261 12 2344 109 0 0 chr6 25680886 25681190 -156734052 + AluSg SINE Alu 1 304 -6 2003 164 3 0 chr6 25681584 25681883 -156733359 + AluSx SINE Alu 1 300 -12 837 286 51 26 chr6 25681907 25682257 -156732985 + MLT1J1 LTR MaLR 59 417 -29 2179 116 3 3 chr6 25682464 25682766 -156732476 + AluSx SINE Alu 1 302 -10 1923 141 0 3 chr6 25683117 25683407 -156731835 - AluSq SINE Alu -24 289 1 627 242 68 55 chr6 25683701 25684081 -156731161 + L1MC4a LINE L1 833 1217 -4902 231 225 127 0 chr6 25684174 25684245 -156730997 + L1MC4a LINE L1 2194 2273 -3856 1221 299 76 91 chr6 25684340 25685609 -156729633 - ERVL LTR ERVL -3122 2642 1393 647 340 18 14 chr6 25685664 25685943 -156729299 - ERVL LTR ERVL -3799 1197 918 487 166 183 145 chr6 25686464 25686699 -156728543 + MER4C LTR ERV1 1 244 -221 639 245 77 32 chr6 25686952 25687235 -156728007 + MER4C LTR ERV1 275 465 0 603 326 5 0 chr6 25687238 25687431 -156727811 - ERVL LTR ERVL -4764 232 39 634 220 72 151 chr6 25687471 25687848 -156727394 - LTR16A1 LTR ERVL -2 455 109 1108 294 112 44 chr6 25688054 25689338 -156725904 + L1MC4a LINE L1 2868 4239 -1890 2573 54 0 0 chr6 25689357 25689655 -156725587 + AluY SINE Alu 1 298 -13 1146 186 13 0 chr6 25689655 25689881 -156725361 - L1 LINE L1 -1507 4639 4411 237 33 0 0 chr6 25690393 25690423 -156724819 + (CA)n Simple_repeat Simple_repeat 1 30 0 287 270 22 0 chr6 25690496 25690585 -156724657 + MIR SINE MIR 172 262 0 272 336 90 0 chr6 25690719 25690841 -156724401 - MIR SINE MIR -89 173 41 182 313 75 0 chr6 25691139 25691206 -156724036 - L2 LINE L2 -1 3312 3241 1280 210 46 65 chr6 25691359 25691731 -156723511 + MLT1A1 LTR MaLR 1 365 0 416 272 133 17 chr6 25692372 25692545 -156722697 - MIR SINE MIR -22 240 48 464 147 0 21 chr6 25692950 25693045 -156722197 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 183 42 0 0 chr6 25693063 25693087 -156722155 + (GA)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr6 25693348 25693373 -156721869 + AT_rich Low_complexity Low_complexity 1 25 0 313 242 0 0 chr6 25694115 25694181 -156721061 - MIR SINE MIR -63 199 134 3707 107 8 8 chr6 25694543 25695050 -156720192 - MER84 LTR ERV1 0 507 1 866 282 135 18 chr6 25695640 25696268 -156718974 + L1MC4a LINE L1 4544 5245 -884 843 306 104 44 chr6 25696274 25696996 -156718246 + L1MC4a LINE L1 5276 6040 -1751 21 36 0 0 chr6 25697054 25697082 -156718160 + AT_rich Low_complexity Low_complexity 1 28 0 2229 113 0 3 chr6 25697082 25697384 -156717858 + AluSp SINE Alu 1 301 -12 418 252 61 48 chr6 25697429 25697576 -156717666 - MIR SINE MIR -31 231 83 405 176 44 0 chr6 25698862 25698930 -156716312 + MER63 DNA MER1_type 673 743 -317 519 347 46 44 chr6 25701010 25701690 -156713552 + L2 LINE L2 2556 3229 -43 314 313 101 23 chr6 25701833 25702050 -156713192 + L1ME4a LINE L1 5279 5512 -2296 2222 162 25 33 chr6 25702139 25702699 -156712543 - MLT2A2 LTR ERVL 0 554 5 243 271 0 0 chr6 25702705 25702764 -156712478 - tRNA-Lys-AAG tRNA tRNA -17 59 1 476 253 68 48 chr6 25702764 25703054 -156712188 + L1ME4a LINE L1 5618 5905 -216 240 319 25 34 chr6 25703456 25703575 -156711667 + L2 LINE L2 3155 3272 0 657 308 25 1 chr6 25703929 25704140 -156711102 + MIR SINE MIR 45 259 -3 186 225 25 0 chr6 25705540 25705580 -156709662 - L2 LINE L2 -81 3191 3151 311 200 57 0 chr6 25706283 25706353 -156708889 + L1ME LINE L1 5774 5847 -274 858 225 38 21 chr6 25706370 25706606 -156708636 + MLT1C LTR MaLR 3 242 -225 2266 99 3 7 chr6 25708449 25708752 -156706490 + AluSx SINE Alu 1 302 -10 2075 107 0 31 chr6 25709202 25709531 -156705711 - AluSg SINE Alu 0 320 1 231 313 91 40 chr6 25709828 25709927 -156705315 + MIR SINE MIR 16 119 -89 2170 88 7 29 chr6 25710685 25710993 -156704249 + AluSx SINE Alu 5 305 -7 243 61 0 0 chr6 25712295 25712328 -156702914 + (CA)n Simple_repeat Simple_repeat 1 33 0 377 235 37 0 chr6 25713648 25713729 -156701513 - MER45C DNA AcHobo -1 952 869 963 237 19 19 chr6 25713821 25714036 -156701206 - MER45C DNA AcHobo -733 220 6 188 358 124 29 chr6 25715227 25715364 -156699878 - L2 LINE L2 0 3272 3123 184 356 127 29 chr6 25715483 25715688 -156699554 - L2 LINE L2 -225 3047 2823 2298 100 3 25 chr6 25715693 25716013 -156699229 + AluSp SINE Alu 1 313 0 563 266 44 0 chr6 25716695 25716853 -156698389 - MIR SINE MIR 0 262 98 607 207 36 93 chr6 25717472 25717665 -156697577 + MIR SINE MIR 81 262 0 1839 163 77 9 chr6 25718143 25718469 -156696773 + MER7A DNA MER2_type 1 346 0 205 308 22 11 chr6 25719294 25719385 -156695857 + CT-rich Low_complexity Low_complexity 1 92 0 504 254 68 59 chr6 25722306 25722542 -156692700 - L2 LINE L2 -43 3270 3033 434 299 22 15 chr6 25723743 25723877 -156691365 - MIR3 SINE MIR -7 201 67 202 333 108 11 chr6 25724463 25724556 -156690686 + MIR SINE MIR 66 167 -95 1675 81 27 9 chr6 25725582 25725803 -156689439 - L1PA8 LINE L1 -7 6165 5941 2200 90 27 0 chr6 25726729 25726906 -156688336 - AluY SINE Alu -3 308 118 333 0 0 0 chr6 25726906 25726943 -156688299 + (TG)n Simple_repeat Simple_repeat 2 38 0 2200 90 27 0 chr6 25726943 25727065 -156688177 - AluY SINE Alu -193 118 1 186 298 223 0 chr6 25727855 25727949 -156687293 + MIR3 SINE MIR 62 176 -32 * 861 303 115 25 chr6 25727938 25728475 -156686767 - L2 LINE L2 0 3313 2734 539 262 211 23 chr6 25728527 25728783 -156686459 - L2 LINE L2 -942 2372 2069 644 319 113 0 chr6 25728908 25729137 -156686105 + MIR SINE MIR 4 258 -4 222 91 0 0 chr6 25729832 25729865 -156685377 + (CA)n Simple_repeat Simple_repeat 2 34 0 2075 133 78 10 chr6 25730507 25730907 -156684335 - L1MA8 LINE L1 -4 6287 5861 440 329 189 23 chr6 25730908 25731437 -156683805 - L2 LINE L2 -568 2746 2130 864 200 0 7 chr6 25731437 25731592 -156683650 + FRAM SINE Alu 1 153 -23 218 362 80 31 chr6 25731598 25731949 -156683293 - L2 LINE L2 -1170 2144 1777 22 0 0 0 chr6 25733855 25733877 -156681365 + AT_rich Low_complexity Low_complexity 1 22 0 2075 118 0 16 chr6 25734692 25734996 -156680246 - AluSc SINE Alu -10 299 1 2031 104 36 4 chr6 25737812 25738122 -156677120 + AluSq SINE Alu 1 319 0 21 82 0 0 chr6 25738531 25738580 -156676662 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr6 25740023 25740046 -156675196 + AT_rich Low_complexity Low_complexity 1 23 0 1431 191 14 24 chr6 25741111 25741404 -156673838 + AluJo SINE Alu 1 290 -22 2598 129 42 4 chr6 25741596 25742053 -156673189 - L1MA8 LINE L1 -10 6281 5808 620 215 224 5 chr6 25743866 25744071 -156671171 - MIR SINE MIR -3 259 10 2470 77 3 3 chr6 25744365 25744676 -156670566 + AluY SINE Alu 1 311 0 2461 73 0 3 chr6 25744765 25745066 -156670176 + AluY SINE Alu 1 300 -11 373 285 244 0 chr6 25745098 25745270 -156669972 + MIR SINE MIR 18 231 -31 2331 80 0 13 chr6 25745370 25745682 -156669560 - AluY SINE Alu -3 308 1 213 290 161 11 chr6 25745715 25745842 -156669400 + MIR SINE MIR 45 185 -23 4369 184 41 13 chr6 25746590 25748428 -156666814 + L1MB3 LINE L1 4296 6183 0 288 356 73 26 chr6 25749065 25749256 -156665986 - MIR SINE MIR -35 227 28 2078 117 16 10 chr6 25749390 25749697 -156665545 + AluSx SINE Alu 1 309 -3 423 56 0 0 chr6 25750780 25750834 -156664408 + (CA)n Simple_repeat Simple_repeat 1 54 0 180 311 0 0 chr6 25751052 25751097 -156664145 - L3 LINE CR1 -642 935 891 471 259 52 7 chr6 25751397 25751532 -156663710 - MIR SINE MIR -51 211 71 951 126 77 13 chr6 25751886 25752170 -156663072 + MLT1B LTR MaLR 7 390 0 532 288 42 42 chr6 25752869 25753081 -156662161 - MIR SINE MIR -1 261 50 185 321 36 12 chr6 25753183 25753267 -156661975 + MER5A DNA MER1_type 17 102 -87 * 207 301 36 24 chr6 25753234 25753317 -156661925 - MER5A DNA MER1_type -95 94 11 31 0 0 0 chr6 25753633 25753664 -156661578 + AT_rich Low_complexity Low_complexity 1 31 0 490 48 0 0 chr6 25755414 25755477 -156659765 - L1PA4 LINE L1 -208 5947 5885 1329 25 0 6 chr6 25755477 25755631 -156659611 + L1PA5 LINE L1 5989 6146 -8 3797 253 111 48 chr6 25756791 25758924 -156656318 + HAL1 LINE L1 4 2270 -237 45 45 0 0 chr6 25759066 25759132 -156656110 + AT_rich Low_complexity Low_complexity 1 66 0 354 281 70 47 chr6 25759194 25759365 -156655877 + HAL1 LINE L1 2332 2506 -1 1850 196 63 42 chr6 25760202 25760473 -156654769 - LTR40a LTR ERVL 0 519 255 438 148 11 0 chr6 25760473 25760561 -156654681 - L1MB4 LINE L1 -4 6176 6088 1850 196 63 42 chr6 25760561 25760649 -156654593 - LTR40a LTR ERVL -264 255 170 940 231 33 0 chr6 25760649 25760861 -156654381 - MER20 DNA MER1_type 0 219 1 1850 196 63 42 chr6 25760861 25761006 -156654236 - LTR40a LTR ERVL -349 170 3 271 215 19 47 chr6 25761222 25761329 -156653913 - HAL1 LINE L1 -375 2132 2029 213 121 0 0 chr6 25761468 25761501 -156653741 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 1823 155 0 14 chr6 25761525 25761821 -156653421 - AluSx SINE Alu -20 292 1 367 278 37 0 chr6 25761823 25761931 -156653311 + MIR SINE MIR 151 262 0 29068 116 14 58 chr6 25763308 25769726 -156645516 + L1PA7 LINE L1 13 6141 -13 317 217 217 26 chr6 25770776 25770928 -156644314 - L3b LINE CR1 -202 1381 1201 319 378 13 42 chr6 25770928 25771166 -156644076 - L3b LINE CR1 -27 1556 1326 263 104 21 0 chr6 25771457 25771505 -156643737 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 421 273 131 21 chr6 25772214 25772353 -156642889 - L1ME4a LINE L1 -5 6116 5994 438 20 0 0 chr6 25772353 25772404 -156642838 + (TC)n Simple_repeat Simple_repeat 1 51 0 421 273 131 21 chr6 25772404 25772546 -156642696 - L1ME4a LINE L1 -127 5994 5804 2589 62 3 3 chr6 25773475 25773784 -156641458 - AluSx SINE Alu -3 309 1 1892 323 131 22 chr6 25774954 25776286 -156638956 + L2 LINE L2 1787 3263 -50 2199 184 29 45 chr6 25776501 25777013 -156638229 + MLT1D LTR MaLR 2 505 0 1916 142 21 21 chr6 25777042 25777379 -156637863 + MER1B DNA MER1_type 2 338 -1 181 279 59 15 chr6 25780040 25780108 -156635134 - L2 LINE L2 -16 3256 3186 328 369 92 10 chr6 25780240 25780446 -156634796 - L2 LINE L2 -214 3058 2836 647 347 133 25 chr6 25780997 25781686 -156633556 - L2 LINE L2 -799 2515 1752 1609 192 20 3 chr6 25783604 25783901 -156631341 - AluJo SINE Alu -10 302 1 25 0 0 0 chr6 25783901 25783926 -156631316 + AT_rich Low_complexity Low_complexity 1 25 0 477 338 152 0 chr6 25784384 25784594 -156630648 - MIR SINE MIR -1 261 20 304 252 89 49 chr6 25784605 25784727 -156630515 - MER112 DNA MER1_type -6 254 128 907 193 25 35 chr6 25784727 25784929 -156630313 + MER45B DNA AcHobo 3 202 -838 2831 182 64 49 chr6 25784938 25785658 -156629584 + MER45B DNA AcHobo 310 1040 0 1345 144 111 78 chr6 25785798 25785993 -156629249 - THE1C LTR MaLR -3 372 158 693 93 0 0 chr6 25785993 25786100 -156629142 + (CGAG)n Simple_repeat Simple_repeat 2 108 0 1345 144 111 78 chr6 25786100 25786264 -156628978 - THE1C LTR MaLR -217 158 1 349 313 112 0 chr6 25786862 25786996 -156628246 - MIR SINE MIR -80 182 34 360 119 0 0 chr6 25789372 25789431 -156625811 + (TTCA)n Simple_repeat Simple_repeat 2 60 0 186 277 0 84 chr6 25789864 25789947 -156625295 + L2 LINE L2 3020 3095 -177 219 289 77 0 chr6 25790080 25790132 -156625110 + L2 LINE L2 3169 3224 -48 243 307 40 0 chr6 25791364 25791439 -156623803 - L2 LINE L2 -43 3229 3152 454 316 153 26 chr6 25791708 25792164 -156623078 - L2 LINE L2 -560 2754 2241 1815 212 60 19 chr6 25794240 25794725 -156620517 - MLT1D LTR MaLR 0 505 1 590 280 202 27 chr6 25795288 25795533 -156619709 - L2 LINE L2 -5 3308 2988 1820 156 3 11 chr6 25795533 25795846 -156619396 + AluJo SINE Alu 1 311 0 590 280 202 27 chr6 25795846 25795931 -156619311 - L2 LINE L2 -325 2988 2919 181 323 108 0 chr6 25796392 25796485 -156618757 + L2 LINE L2 3170 3272 -41 306 73 0 0 chr6 25797178 25797219 -156618023 + (CA)n Simple_repeat Simple_repeat 2 42 0 271 333 101 0 chr6 25797668 25797767 -156617475 - MIR3 SINE MIR -10 198 90 190 265 0 0 chr6 25797919 25797968 -156617274 + MIR SINE MIR 209 257 -5 180 77 0 0 chr6 25797972 25797998 -156617244 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 341 320 102 87 chr6 25799078 25799353 -156615889 - L2 LINE L2 -5 3267 2989 404 384 42 3 chr6 25799543 25799874 -156615368 - L2 LINE L2 -536 2778 2435 * 465 314 162 34 chr6 25799822 25800230 -156615012 + L3 LINE CR1 389 848 -729 3576 183 160 18 chr6 25800551 25801901 -156613341 + L1PA16 LINE L1 3720 5348 -818 2148 134 3 0 chr6 25801901 25802200 -156613042 + AluSq SINE Alu 1 300 -13 3576 183 160 18 chr6 25802200 25802370 -156612872 + L1PA16 LINE L1 5348 5492 -674 995 188 0 24 chr6 25802370 25802557 -156612685 + L1PA15 LINE L1 5956 6158 -7 4181 138 5 1 chr6 25802578 25803251 -156611991 + L1PA16 LINE L1 5477 6151 -15 194 224 35 0 chr6 25803265 25803323 -156611919 + GA-rich Low_complexity Low_complexity 3 62 0 231 209 0 0 chr6 25803496 25803539 -156611703 - L2 LINE L2 -4 3309 3267 296 300 127 0 chr6 25803621 25803731 -156611511 + L2 LINE L2 3149 3272 0 1767 152 27 24 chr6 25804071 25804368 -156610874 + AluJo SINE Alu 6 303 -9 318 132 0 0 chr6 25805576 25805629 -156609613 + (T)n Simple_repeat Simple_repeat 1 53 0 1685 182 18 0 chr6 25806793 25807122 -156608120 - L1PB4 LINE L1 0 6156 5822 260 214 157 0 chr6 25807226 25807296 -156607946 - LTR37A LTR ERV1 -345 81 1 1524 157 47 50 chr6 25807315 25807447 -156607795 - MER31-int LTR ERV1 -727 4209 4078 2430 86 0 0 chr6 25807447 25807748 -156607494 - AluY SINE Alu -10 301 1 1524 157 47 50 chr6 25807748 25807934 -156607308 - MER31-int LTR ERV1 -858 4078 3892 348 191 0 0 chr6 25807942 25808005 -156607237 - Charlie3 DNA MER1_type -25 2685 2623 231 209 0 0 chr6 25808002 25808045 -156607197 - Charlie3 DNA MER1_type -2612 98 56 * 3947 184 50 68 chr6 25808077 25809202 -156606040 - MER31-int LTR ERV1 -1042 3894 2790 2322 92 0 3 chr6 25809202 25809508 -156605734 + AluSq SINE Alu 1 305 -8 3947 184 50 68 chr6 25809508 25809592 -156605650 - MER31-int LTR ERV1 -2146 2790 2706 192 40 0 0 chr6 25809737 25809762 -156605480 + (GGGTG)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 25809986 25810008 -156605234 + AT_rich Low_complexity Low_complexity 1 22 0 364 242 83 125 chr6 25810892 25811168 -156604074 - MIR SINE MIR 0 262 4 529 211 0 0 chr6 25811700 25811795 -156603447 + FLAM_A SINE Alu 1 95 -47 1453 193 3 24 chr6 25811795 25812085 -156603157 + AluJo SINE Alu 26 309 -3 466 333 59 34 chr6 25812171 25812408 -156602834 + MIR SINE MIR 12 254 -8 2112 132 0 13 chr6 25813015 25813318 -156601924 - AluSx SINE Alu -13 299 1 804 194 0 0 chr6 25813822 25813951 -156601291 - FLAM_A SINE Alu -4 129 1 204 40 0 0 chr6 25813962 25813987 -156601255 + (A)n Simple_repeat Simple_repeat 1 25 0 257 250 113 0 chr6 25814310 25814390 -156600852 - MIR SINE MIR -54 208 120 2188 110 13 0 chr6 25814721 25815020 -156600222 - AluSx SINE Alu -9 303 1 442 219 207 39 chr6 25816365 25816621 -156598621 + L2 LINE L2 3015 3313 0 529 241 211 77 chr6 25816663 25816803 -156598439 + L2 LINE L2 2560 2680 -633 2331 82 0 20 chr6 25816803 25817107 -156598135 + AluSg1 SINE Alu 1 298 -11 529 241 211 77 chr6 25817107 25817516 -156597726 + L2 LINE L2 2680 3216 -97 198 103 0 0 chr6 25817516 25817545 -156597697 + (CA)n Simple_repeat Simple_repeat 1 29 0 529 241 211 77 chr6 25817545 25817656 -156597586 + L2 LINE L2 3216 3311 -2 300 292 117 50 chr6 25817803 25818043 -156597199 + L2 LINE L2 3013 3268 -45 2010 151 0 0 chr6 25818788 25819086 -156596156 + AluJb SINE Alu 1 298 -14 289 338 112 39 chr6 25819145 25819627 -156595615 + L2 LINE L2 2288 2804 -510 589 158 0 0 chr6 25819824 25819925 -156595317 - AluSg/x SINE Alu -3 306 206 346 319 76 19 chr6 25819934 25820091 -156595151 + MIR SINE MIR 89 254 -8 189 268 0 0 chr6 25820824 25820865 -156594377 + L2 LINE L2 3231 3271 -1 2870 6 0 0 chr6 25822459 25822770 -156592472 - AluYa5 SINE Alu 0 311 1 2810 13 0 0 chr6 25823955 25824262 -156590980 - AluYa5 SINE Alu -4 307 1 791 182 0 0 chr6 25825064 25825185 -156590057 + FLAM_A SINE Alu 1 121 -12 1066 187 4 52 chr6 25825193 25825423 -156589819 - MER20 DNA MER1_type 0 219 1 746 110 110 17 chr6 25825586 25825704 -156589538 - FLAM_C SINE Alu -4 129 1 11753 165 13 8 chr6 25825964 25826555 -156588687 + L1PA13 LINE L1 2438 3024 -3139 1880 150 17 7 chr6 25826555 25826842 -156588400 + AluJb SINE Alu 3 292 -20 11753 165 13 8 chr6 25826842 25829957 -156585285 + L1PA13 LINE L1 3024 6162 -1 419 298 93 24 chr6 25830177 25830425 -156584817 + L1MC/D LINE L1 4936 5200 -946 2220 137 12 9 chr6 25830481 25830817 -156584425 - MER1B DNA MER1_type 0 337 1 872 291 20 12 chr6 25830905 25831156 -156584086 + MIR SINE MIR 1 253 -9 493 278 146 9 chr6 25831257 25831469 -156583773 + L1MC/D LINE L1 5513 5753 -2055 3144 118 29 4 chr6 25831469 25831959 -156583283 + L1PA16 LINE L1 5648 6149 -17 308 65 43 0 chr6 25832006 25832052 -156583190 + LTR54 LTR ERV1 402 449 -61 2173 119 9 25 chr6 25832109 25832427 -156582815 + AluSq SINE Alu 1 313 0 1545 178 44 30 chr6 25832587 25832885 -156582357 + AluJb SINE Alu 3 304 -8 2533 53 0 0 chr6 25833565 25833869 -156581373 + AluY SINE Alu 1 304 -7 531 222 106 48 chr6 25833941 25834130 -156581112 - MIR SINE MIR 0 262 63 390 355 16 0 chr6 25834957 25835081 -156580161 - L2 LINE L2 -4 3268 3143 25 0 0 0 chr6 25835100 25835125 -156580117 + AT_rich Low_complexity Low_complexity 1 25 0 2522 93 0 0 chr6 25835675 25835985 -156579257 - AluSx SINE Alu -2 310 1 629 297 101 14 chr6 25836014 25836310 -156578932 + L3 LINE CR1 1141 1462 -115 264 241 0 0 chr6 25836504 25836558 -156578684 - L2 LINE L2 -86 3186 3133 385 331 58 46 chr6 25836886 25837146 -156578096 + MLT1K LTR MaLR 129 391 -197 1804 145 21 28 chr6 25839275 25839564 -156575678 + AluJo SINE Alu 1 287 -25 2025 163 0 0 chr6 25840065 25840371 -156574871 + AluSx SINE Alu 1 306 -6 626 286 83 14 chr6 25840695 25840942 -156574300 + MIR SINE MIR 2 262 0 2004 140 3 0 chr6 25842300 25842586 -156572656 + AluSx SINE Alu 1 287 -25 291 261 137 76 chr6 25842693 25843374 -156571868 + L1MEd LINE L1 300 1021 -5098 615 124 105 0 chr6 25843382 25843487 -156571755 - AluSg/x SINE Alu -3 309 194 21 0 0 0 chr6 25843686 25843707 -156571535 + AT_rich Low_complexity Low_complexity 1 21 0 2498 87 0 0 chr6 25843862 25844174 -156571068 - AluSx SINE Alu 0 312 1 347 108 0 302 chr6 25844561 25844690 -156570552 + FRAM SINE Alu 56 145 -21 183 146 0 0 chr6 25844696 25844737 -156570505 + (TA)n Simple_repeat Simple_repeat 1 41 0 316 267 100 86 chr6 25845083 25845180 -156570062 + MIR SINE MIR 2 96 -166 2298 105 3 16 chr6 25845180 25845495 -156569747 + AluSq SINE Alu 1 311 -2 316 267 100 86 chr6 25845495 25845607 -156569635 + MIR SINE MIR 96 214 -48 447 322 43 43 chr6 25845682 25845890 -156569352 + MIR SINE MIR 53 260 -2 1241 236 53 16 chr6 25850084 25850630 -156564612 + L1MEd LINE L1 2618 3183 -2946 5963 132 93 13 chr6 25850826 25851966 -156563276 - Tigger3b DNA MER2_type 0 1231 1 226 239 75 15 chr6 25851975 25852042 -156563200 + Tigger5 DNA MER2_type 8 78 -2245 283 241 218 0 chr6 25852123 25852256 -156562986 + L1MEd LINE L1 3745 3906 -2223 1872 268 85 29 chr6 25852262 25853782 -156561460 + L1MEd LINE L1 4539 6146 -7 25 65 0 0 chr6 25853785 25853831 -156561411 + AT_rich Low_complexity Low_complexity 1 46 0 243 349 34 48 chr6 25854677 25854823 -156560419 - L2 LINE L2 -2 3270 3127 332 317 192 30 chr6 25855102 25855373 -156559869 - L2 LINE L2 -552 2762 2448 2812 111 9 79 chr6 25855442 25855972 -156559270 - LTR12 LTR ERV1 -220 494 2 2740 106 97 5 chr6 25855997 25856431 -156558811 + MER101 LTR ERV1 1 474 0 21 36 0 0 chr6 25857411 25857439 -156557803 + AT_rich Low_complexity Low_complexity 1 28 0 948 283 56 43 chr6 25858771 25859185 -156556057 + LTR16C LTR ERVL 73 491 0 234 326 0 0 chr6 25859189 25859287 -156555955 + HAL1 LINE L1 1495 1592 -915 12206 154 29 55 chr6 25859297 25862406 -156552836 + L1MA3 LINE L1 17 3815 -3750 939 156 0 0 chr6 25862406 25862547 -156552695 + FLAM_C SINE Alu 1 141 -2 12206 154 29 55 chr6 25862547 25863387 -156551855 + L1MA3 LINE L1 3815 4676 -2889 6095 131 33 4 chr6 25863387 25864845 -156550397 + L1MA3 LINE L1 6216 7724 0 812 304 32 6 chr6 25864857 25865170 -156550072 + HAL1 LINE L1 1583 1903 -604 252 236 0 0 chr6 25865182 25865237 -156550005 + MIR SINE MIR 197 251 -11 418 204 0 21 chr6 25865463 25865556 -156549686 - MER103 DNA DNA -75 91 1 2137 146 0 0 chr6 25865592 25865900 -156549342 + AluSx SINE Alu 1 308 -4 2013 118 0 4 chr6 25865989 25866259 -156548983 - AluSx SINE Alu -43 269 1 194 354 15 0 chr6 25866919 25866984 -156548258 + L2 LINE L2 3206 3271 -1 1968 122 49 0 chr6 25868327 25868654 -156546588 + AluJb SINE Alu 1 341 0 3063 119 14 4 chr6 25869868 25870381 -156544861 + L1P5 LINE L1 5260 5777 -379 292 297 11 0 chr6 25870384 25870475 -156544767 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 455 288 120 20 chr6 25871882 25872119 -156543123 - MIR SINE MIR 0 262 1 263 226 0 48 chr6 25872224 25872286 -156542956 + L2 LINE L2 3246 3304 -9 2185 135 0 0 chr6 25872423 25872726 -156542516 + AluSx SINE Alu 1 303 -9 248 254 0 0 chr6 25872946 25873009 -156542233 - L1MC/D LINE L1 -1909 5899 5837 720 156 0 33 chr6 25873030 25873152 -156542090 - FRAM SINE Alu -14 162 45 2215 122 3 6 chr6 25873967 25874279 -156540963 + AluSq SINE Alu 1 311 -2 558 79 0 0 chr6 25874717 25874793 -156540449 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 507 279 53 43 chr6 25876549 25877050 -156538192 + L1MCc LINE L1 1130 1796 -4889 1409 243 75 33 chr6 25877051 25877280 -156537962 + L1MCc LINE L1 2144 2362 -4760 2099 98 4 4 chr6 25877280 25877557 -156537685 + AluSg SINE Alu 18 294 -16 1409 243 75 33 chr6 25877557 25878057 -156537185 + L1MCc LINE L1 2362 3094 -4028 819 168 0 40 chr6 25878064 25878213 -156537029 + FLAM_C SINE Alu 1 143 0 338 320 44 61 chr6 25878668 25878896 -156536346 + L2 LINE L2 2070 2293 -1021 199 298 85 0 chr6 25879684 25879778 -156535464 - MIR SINE MIR -7 255 154 246 316 164 6 chr6 25879826 25879997 -156535245 - MIR SINE MIR -56 206 9 2356 135 41 21 chr6 25880100 25880536 -156534706 + LTR7 LTR ERV1 1 445 -5 28 0 0 0 chr6 25880665 25880693 -156534549 + AT_rich Low_complexity Low_complexity 1 28 0 251 323 79 8 chr6 25882009 25882136 -156533106 - L2 LINE L2 -3 3310 3175 211 301 131 20 chr6 25882174 25882327 -156532915 + MIR3 SINE MIR 24 193 -15 1789 182 3 16 chr6 25882408 25882721 -156532521 + AluJo SINE Alu 1 309 -3 22 0 0 0 chr6 25883390 25883412 -156531830 + AT_rich Low_complexity Low_complexity 1 22 0 474 351 7 0 chr6 25883705 25883856 -156531386 - L2 LINE L2 -2 3311 3160 1135 306 184 14 chr6 25883881 25884711 -156530531 - L2 LINE L2 -412 2902 1932 463 303 155 28 chr6 25884825 25885218 -156530024 + L1ME4a LINE L1 5528 5970 -151 209 280 0 0 chr6 25885276 25885326 -156529916 + (CATA)n Simple_repeat Simple_repeat 3 52 0 24 103 0 0 chr6 25885392 25885479 -156529763 + AT_rich Low_complexity Low_complexity 1 87 0 2131 251 38 45 chr6 25885480 25886589 -156528653 + L1MC4 LINE L1 4766 5396 -750 5330 136 10 27 chr6 25886626 25886995 -156528247 - L1PB4 LINE L1 -8 6148 5774 378 0 0 0 chr6 25886995 25887037 -156528205 + (TG)n Simple_repeat Simple_repeat 2 43 0 5330 136 10 27 chr6 25887037 25887725 -156527517 - L1PB4 LINE L1 -382 5774 5106 330 181 0 0 chr6 25887745 25887817 -156527425 - L1PB4 LINE L1 -1013 5133 5062 * 4153 214 47 68 chr6 25887813 25888580 -156526662 + L1MC4 LINE L1 5847 6629 -1413 2119 120 7 0 chr6 25888580 25888863 -156526379 - AluSx SINE Alu -27 285 1 4153 214 47 68 chr6 25888863 25889704 -156525538 + L1MC4 LINE L1 6629 7486 -556 3172 190 48 10 chr6 25889704 25890388 -156524854 + MER67C LTR ERV1 1 710 0 4153 214 47 68 chr6 25890388 25890446 -156524796 + L1MC4 LINE L1 7486 7464 -578 5719 64 16 11 chr6 25890446 25891208 -156524034 + MER4E LTR ERV1 1 766 0 4153 214 47 68 chr6 25891208 25891295 -156523947 + L1MC4 LINE L1 7463 7550 -492 721 217 32 19 chr6 25891295 25891452 -156523790 + AluSg/x SINE Alu 135 293 -17 255 74 246 0 chr6 25891452 25891504 -156523738 + L1MD3 LINE L1 7461 7701 -280 1011 221 60 15 chr6 25891547 25891814 -156523428 + L1MC4a LINE L1 7530 7808 0 1526 226 3 0 chr6 25892833 25893142 -156522100 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr6 25894021 25894043 -156521199 + AT_rich Low_complexity Low_complexity 1 22 0 748 179 0 12 chr6 25894308 25894476 -156520766 + GA-rich Low_complexity Low_complexity 3 168 0 1882 152 3 7 chr6 25894810 25895106 -156520136 + AluJb SINE Alu 4 298 -14 208 297 117 27 chr6 25895180 25895291 -156519951 + L2 LINE L2 3142 3262 -10 297 0 0 0 chr6 25895685 25895718 -156519524 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2225 88 0 3 chr6 25895721 25896005 -156519237 - AluSq SINE Alu -29 284 2 206 356 14 14 chr6 25897233 25897306 -156517936 - MIR SINE MIR -186 76 4 22 0 0 0 chr6 25898304 25898326 -156516916 + AT_rich Low_complexity Low_complexity 1 22 0 254 374 27 32 chr6 25898908 25899095 -156516147 + L3b LINE CR1 1106 1291 -292 858 166 0 14 chr6 25899530 25899669 -156515573 - AluJb SINE Alu -13 299 163 21 0 0 0 chr6 25899877 25899898 -156515344 + AT_rich Low_complexity Low_complexity 1 21 0 1006 289 109 29 chr6 25900436 25900987 -156514255 + MLT1G1 LTR MaLR 1 595 0 561 342 27 78 chr6 25901098 25901507 -156513735 - L2 LINE L2 0 3272 2885 303 356 38 0 chr6 25901507 25901639 -156513603 - MLT1G1 LTR MaLR -405 190 54 396 310 124 54 chr6 25901642 25901694 -156513548 - L2 LINE L2 -458 2856 2809 537 299 75 17 chr6 25901694 25901935 -156513307 + MER112 DNA MER1_type 2 256 0 396 310 124 54 chr6 25901935 25902343 -156512899 - L2 LINE L2 -505 2809 2364 1154 161 62 21 chr6 25902692 25902935 -156512307 - THE1C LTR MaLR -122 253 1 483 282 0 103 chr6 25903111 25903345 -156511897 + LTR67 LTR ERVL 348 557 0 399 296 26 20 chr6 25903822 25903974 -156511268 - MIR SINE MIR -12 250 98 24 0 0 0 chr6 25904188 25904212 -156511030 + AT_rich Low_complexity Low_complexity 1 24 0 2171 116 0 13 chr6 25904493 25904796 -156510446 + AluSx SINE Alu 1 299 -13 451 205 45 36 chr6 25905085 25905197 -156510045 + MIR SINE MIR 120 232 -30 615 316 128 67 chr6 25905349 25905642 -156509600 + L2 LINE L2 2391 2665 -607 2182 102 7 3 chr6 25905642 25905926 -156509316 - AluSq SINE Alu -27 286 2 615 316 128 67 chr6 25905926 25906455 -156508787 + L2 LINE L2 2665 3272 0 366 381 12 12 chr6 25907095 25907255 -156507987 + L2 LINE L2 2904 3063 -209 21 36 0 0 chr6 25907294 25907322 -156507920 + AT_rich Low_complexity Low_complexity 1 28 0 2091 136 0 0 chr6 25907715 25908009 -156507233 - AluSx SINE Alu -18 294 1 21 0 0 0 chr6 25908495 25908516 -156506726 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr6 25908932 25908957 -156506285 + (CA)n Simple_repeat Simple_repeat 2 26 0 2121 97 20 10 chr6 25910031 25910331 -156504911 - AluY SINE Alu -8 303 1 1854 144 50 19 chr6 25910820 25911180 -156504062 - L1MA7 LINE L1 -1 6290 5920 605 152 0 0 chr6 25911188 25911287 -156503955 + L1MA7 LINE L1 5802 5900 -400 1757 126 96 0 chr6 25912882 25913152 -156502090 + AluSx SINE Alu 3 298 -14 2092 116 10 3 chr6 25913457 25913750 -156501492 + AluSx SINE Alu 3 297 -15 231 238 148 40 chr6 25914294 25914377 -156500865 + L2 LINE L2 3198 3295 -18 1329 185 108 16 chr6 25914377 25914691 -156500551 - MER2 DNA MER2_type 0 344 2 231 238 148 40 chr6 25914691 25914708 -156500534 + L2 LINE L2 3295 3309 -4 280 250 44 0 chr6 25915045 25915113 -156500129 - LTR65 LTR ERV1 -6 663 593 622 253 25 0 chr6 25915374 25915532 -156499710 - LTR65 LTR ERV1 -505 164 3 285 337 61 25 chr6 25915748 25915911 -156499331 + L2 LINE L2 3078 3246 -26 2249 90 0 0 chr6 25918805 25919094 -156496148 + AluSg SINE Alu 1 289 -21 25 31 0 0 chr6 25920658 25920690 -156494552 + AT_rich Low_complexity Low_complexity 1 32 0 236 312 153 37 chr6 25920970 25921159 -156494083 + L3b LINE CR1 1353 1563 -20 24 77 0 0 chr6 25921319 25921371 -156493871 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr6 25922389 25922410 -156492832 + AT_rich Low_complexity Low_complexity 1 21 0 295 304 54 0 chr6 25922490 25922602 -156492640 - MIR SINE MIR -72 190 73 2343 167 98 23 chr6 25923008 25923540 -156491702 + L1MB7 LINE L1 5602 6173 -11 191 310 126 11 chr6 25923656 25923743 -156491499 + L2 LINE L2 3112 3208 -64 186 43 0 0 chr6 25925109 25925132 -156490110 + (CA)n Simple_repeat Simple_repeat 2 24 0 638 177 0 24 chr6 25925312 25925436 -156489806 + FLAM_C SINE Alu 1 121 -22 1024 138 80 62 chr6 25925445 25925670 -156489572 + AluJo SINE Alu 59 287 -25 708 66 80 3 chr6 25925675 25925956 -156489286 + (TA)n Simple_repeat Simple_repeat 1 302 0 187 92 77 0 chr6 25925975 25926040 -156489202 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 * 444 59 82 24 chr6 25926026 25926196 -156489046 + (TA)n Simple_repeat Simple_repeat 1 180 0 44 56 0 0 chr6 25926196 25926268 -156488974 + AT_rich Low_complexity Low_complexity 1 72 0 598 59 95 4 chr6 25926387 25926883 -156488359 + (TA)n Simple_repeat Simple_repeat 1 540 0 683 184 0 0 chr6 25926904 25927018 -156488224 + FLAM_C SINE Alu 3 116 -17 192 77 0 0 chr6 25927018 25927044 -156488198 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 25927288 25927310 -156487932 + GC_rich Low_complexity Low_complexity 1 22 0 249 227 133 0 chr6 25927597 25927672 -156487570 - L2 LINE L2 0 3272 3188 528 265 148 16 chr6 25928043 25928232 -156487010 - MIR SINE MIR 0 262 49 1878 104 4 4 chr6 25928450 25928729 -156486513 + L1PA14 LINE L1 5883 6161 0 619 182 144 8 chr6 25928969 25929101 -156486141 - MER45A DNA AcHobo -25 153 4 221 312 13 0 chr6 25929112 25929189 -156486053 + L2 LINE L2 2227 2304 -1010 1335 205 87 9 chr6 25929189 25929521 -156485721 + MER63B DNA MER1_type 4 361 -75 192 208 30 0 chr6 25929523 25929624 -156485618 + (TTTA)n Simple_repeat Simple_repeat 1 104 0 367 195 23 6 chr6 25929647 25929821 -156485421 + (TTTA)n Simple_repeat Simple_repeat 4 180 0 367 177 43 149 chr6 25929831 25929972 -156485270 + MER63 DNA MER1_type 930 1055 -5 205 387 70 7 chr6 25929978 25930120 -156485122 + L2 LINE L2 2298 2448 -866 1785 169 0 23 chr6 25930531 25930839 -156484403 + AluJb SINE Alu 1 301 -11 396 368 86 23 chr6 25930988 25931339 -156483903 + L2 LINE L2 2494 2866 -448 190 296 8 112 chr6 25931399 25931524 -156483718 + L2 LINE L2 2966 3077 -195 1091 198 0 0 chr6 25931584 25931756 -156483486 - FAM SINE Alu -3 172 1 403 328 0 0 chr6 25931849 25931965 -156483277 + L2 LINE L2 3197 3312 -1 2093 138 7 0 chr6 25932614 25932911 -156482331 - AluSq SINE Alu -14 299 1 680 160 0 9 chr6 25932968 25933074 -156482168 + U6 snRNA snRNA 3 107 0 2122 108 0 7 chr6 25933116 25933437 -156481805 - AluSx SINE Alu 0 319 1 197 246 0 49 chr6 25933847 25933908 -156481334 + L2 LINE L2 3215 3272 0 1285 293 69 90 chr6 25934071 25934169 -156481073 + L1ME3A LINE L1 300 399 -6028 1603 165 53 11 chr6 25934169 25934454 -156480788 - AluJo SINE Alu -15 297 1 1285 293 69 90 chr6 25934454 25935985 -156479257 + L1ME3A LINE L1 399 2141 -4286 2169 116 33 0 chr6 25936181 25936483 -156478759 + AluSx SINE Alu 1 312 0 2275 89 3 3 chr6 25936646 25936937 -156478305 + AluSx SINE Alu 3 293 -19 1788 163 3 13 chr6 25937076 25937377 -156477865 + AluJb SINE Alu 1 298 -14 311 233 54 15 chr6 25937377 25937510 -156477732 + L1ME3A LINE L1 2405 2544 -3882 1325 154 40 86 chr6 25937513 25937743 -156477499 + L1MC/D LINE L1 5443 5610 -701 1933 162 0 7 chr6 25937743 25938046 -156477196 + AluJb SINE Alu 1 301 -11 1325 154 40 86 chr6 25938046 25938250 -156476992 + L1MC/D LINE L1 5610 5822 -489 * 1655 262 72 13 chr6 25938240 25938328 -156476914 + L1ME3A LINE L1 5469 5550 -900 2272 95 0 3 chr6 25938328 25938624 -156476618 + AluSx SINE Alu 18 312 0 1655 262 72 13 chr6 25938624 25938637 -156476605 + L1ME3A LINE L1 5550 5561 -889 1704 171 7 14 chr6 25938637 25938930 -156476312 + AluJb SINE Alu 1 291 -21 7892 29 7 8 chr6 25938930 25939455 -156475787 + L1PA4 LINE L1 5132 5657 -498 2424 48 7 0 chr6 25939455 25939746 -156475496 + AluY SINE Alu 1 293 -18 7892 29 7 8 chr6 25939746 25940244 -156474998 + L1PA4 LINE L1 5657 6154 -1 1655 262 72 13 chr6 25940244 25940851 -156474391 + L1ME3A LINE L1 5560 6231 -219 182 121 0 91 chr6 25941153 25941196 -156474046 + (GGAA)n Simple_repeat Simple_repeat 2 39 -22 2493 67 0 0 chr6 25941196 25941494 -156473748 + AluY SINE Alu 1 298 -13 182 121 0 91 chr6 25941494 25941516 -156473726 + (GGAA)n Simple_repeat Simple_repeat 39 61 0 2073 107 6 38 chr6 25941601 25941919 -156473323 + AluSx SINE Alu 1 308 -4 474 309 236 10 chr6 25942830 25943118 -156472124 + L2 LINE L2 2943 3295 -18 297 151 0 0 chr6 25943175 25943228 -156472014 + GA-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 25944060 25944081 -156471161 + (A)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr6 25944130 25944152 -156471090 + AT_rich Low_complexity Low_complexity 1 22 0 407 268 174 37 chr6 25944899 25945027 -156470215 + MIR SINE MIR 47 211 -51 2231 103 0 3 chr6 25945027 25945319 -156469923 + AluSq SINE Alu 1 291 -22 407 268 174 37 chr6 25945319 25945380 -156469862 + MIR SINE MIR 211 262 0 356 287 37 11 chr6 25945764 25945994 -156469248 + LTR16A1 LTR ERVL 187 456 -1 1115 121 18 30 chr6 25946132 25946297 -156468945 + FRAM SINE Alu 4 166 0 7608 55 1 1 chr6 25946306 25947524 -156467718 + L1PA6 LINE L1 4930 6154 0 295 148 0 37 chr6 25947533 25947587 -156467655 - MLT1B LTR MaLR -338 52 1 1414 124 24 79 chr6 25948095 25948135 -156467107 - L1MA9 LINE L1 -6 6306 6265 1658 168 44 10 chr6 25948135 25948432 -156466810 + AluJo SINE Alu 3 309 -3 1414 124 24 79 chr6 25948432 25948682 -156466560 - L1MA9 LINE L1 -47 6265 6032 292 183 0 33 chr6 25948682 25948742 -156466500 + L1MA6 LINE L1 5883 5940 -360 207 0 0 0 chr6 25948758 25948781 -156466461 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 693 194 0 31 chr6 25948985 25949114 -156466128 + FLAM_C SINE Alu 2 126 -7 865 110 4 25 chr6 25949127 25949362 -156465880 + (GGAA)n Simple_repeat Simple_repeat 1 230 0 2447 84 3 0 chr6 25950390 25950699 -156464543 + AluSp SINE Alu 1 310 -3 22 0 0 0 chr6 25950867 25950889 -156464353 + AT_rich Low_complexity Low_complexity 1 22 0 2648 42 0 0 chr6 25951329 25951638 -156463604 + AluY SINE Alu 1 309 -2 5415 77 3 3 chr6 25951668 25952328 -156462914 - L1PA7 LINE L1 0 6154 5495 854 238 14 22 chr6 25952328 25952551 -156462691 + HsTC2 DNA Tc2 19 239 -1659 203 0 0 36 chr6 25952561 25952589 -156462653 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 274 180 0 33 chr6 25952603 25952664 -156462578 - LTR30 LTR ERV1 -108 614 556 619 195 20 140 chr6 25952692 25952847 -156462395 + HsTC2 DNA Tc2 1629 1734 -164 1436 234 0 17 chr6 25952847 25953146 -156462096 + AluJo SINE Alu 1 294 -18 619 195 20 140 chr6 25953146 25953282 -156461960 + HsTC2 DNA Tc2 1734 1885 -13 1991 105 10 53 chr6 25953384 25953688 -156461554 + AluSx SINE Alu 1 291 -21 2066 142 64 45 chr6 25953797 25954064 -156461178 - MER47A DNA MER2_type -1957 366 89 2056 126 10 0 chr6 25954064 25954366 -156460876 - AluSx SINE Alu -7 305 1 2066 142 64 45 chr6 25954366 25954457 -156460785 - MER47A DNA MER2_type -2234 89 1 22 0 0 0 chr6 25954545 25954567 -156460675 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 25954835 25954863 -156460379 + AT_rich Low_complexity Low_complexity 1 28 0 2203 138 0 0 chr6 25954903 25955214 -156460028 + AluSx SINE Alu 1 311 -1 270 0 0 0 chr6 25955223 25955253 -156459989 + (CA)n Simple_repeat Simple_repeat 2 31 0 2317 107 0 3 chr6 25955731 25956040 -156459202 + AluSq SINE Alu 1 308 -5 2606 37 3 0 chr6 25956433 25956733 -156458509 + AluY SINE Alu 1 301 -10 2148 113 0 0 chr6 25956898 25957189 -156458053 + AluSg SINE Alu 5 295 -15 2114 140 0 9 chr6 25957399 25957714 -156457528 + AluSx SINE Alu 1 312 0 1033 205 57 14 chr6 25957761 25957971 -156457271 + MER20 DNA MER1_type 1 219 0 2218 116 3 0 chr6 25958220 25958522 -156456720 + AluSp SINE Alu 11 313 0 2117 184 3 0 chr6 25959536 25959889 -156455353 + MER47B DNA MER2_type 1 354 -64 309 271 0 23 chr6 25959890 25959914 -156455328 + (TA)n Simple_repeat Simple_repeat 1 24 -106 2071 147 0 3 chr6 25959914 25960214 -156455028 + AluSx SINE Alu 1 299 -13 309 271 0 23 chr6 25960214 25960310 -156454932 + (TA)n Simple_repeat Simple_repeat 24 120 -10 351 0 0 0 chr6 25960310 25960349 -156454893 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 309 271 0 23 chr6 25960349 25960360 -156454882 + (TA)n Simple_repeat Simple_repeat 120 130 0 1605 177 17 27 chr6 25960361 25960660 -156454582 - AluJb SINE Alu -16 296 1 420 175 0 0 chr6 25960661 25960724 -156454518 + MER47B DNA MER2_type 356 418 0 1218 310 68 64 chr6 25960746 25960994 -156454248 + L2 LINE L2 2061 2307 -1007 2047 131 16 13 chr6 25960994 25961306 -156453936 - AluSq SINE Alu 0 313 1 1218 310 68 64 chr6 25961306 25961479 -156453763 + L2 LINE L2 2307 2478 -836 2191 128 11 121 chr6 25961479 25961917 -156453325 + MLT1B LTR MaLR 1 390 0 1218 310 68 64 chr6 25961917 25962323 -156452919 + L2 LINE L2 2478 2892 -422 2188 99 3 0 chr6 25963088 25963464 -156451778 - AluSq SINE Alu 0 377 1 2388 192 63 103 chr6 25964084 25964799 -156450443 - LTR8A LTR ERV1 -8 719 34 1122 287 81 42 chr6 25964814 25964966 -156450276 + L2 LINE L2 1849 1994 -1320 1700 173 287 26 chr6 25964966 25965458 -156449784 - LTR29 LTR ERV1 -1 621 2 1122 287 81 42 chr6 25965458 25965631 -156449611 + L2 LINE L2 1994 2159 -1155 2079 129 10 0 chr6 25965631 25965925 -156449317 - AluSq SINE Alu -16 297 1 1122 287 81 42 chr6 25965925 25966092 -156449150 + L2 LINE L2 2159 2361 -953 1875 110 8 4 chr6 25966100 25966410 -156448832 - AluSp SINE Alu 0 328 18 546 256 32 15 chr6 25966435 25966639 -156448603 - L1MCc LINE L1 -4586 2536 2144 585 265 45 69 chr6 25966640 25967156 -156448086 - L1MCc LINE L1 -4889 1534 1130 977 254 171 28 chr6 25968678 25969178 -156446064 + L2 LINE L2 2732 3312 -1 182 322 59 25 chr6 25969302 25969420 -156445822 - L2 LINE L2 -164 3108 2987 236 356 35 0 chr6 25969535 25969622 -156445620 - L2 LINE L2 -537 2777 2688 524 237 10 0 chr6 25969817 25969914 -156445328 - MER2 DNA MER2_type -247 98 1 420 342 73 6 chr6 25969966 25970179 -156445063 + MIR SINE MIR 5 236 -26 2046 64 0 4 chr6 25970379 25970628 -156444614 - AluY SINE Alu -10 301 54 346 303 83 23 chr6 25970632 25970764 -156444478 - MIR SINE MIR -117 145 6 2225 110 7 0 chr6 25970829 25971121 -156444121 - AluSx SINE Alu -18 294 1 686 260 43 47 chr6 25971121 25971421 -156443821 - L1ME4a LINE L1 -228 5893 5595 2317 95 0 7 chr6 25971442 25971748 -156443494 + AluSx SINE Alu 1 304 -8 729 308 57 0 chr6 25972256 25972555 -156442687 + MER58B DNA MER1_type 26 341 0 1788 179 0 10 chr6 25972609 25972917 -156442325 - AluSx SINE Alu -7 305 1 1599 158 8 8 chr6 25972964 25973229 -156442013 - AluJb SINE Alu -8 304 40 368 329 7 28 chr6 25973232 25973375 -156441867 - L1MC/D LINE L1 -2081 5727 5588 2221 120 0 0 chr6 25973399 25973698 -156441544 + AluSx SINE Alu 1 299 -13 231 277 36 12 chr6 25975102 25975185 -156440057 + MIR SINE MIR 178 262 0 892 194 10 53 chr6 25975244 25975382 -156439860 + MARNA DNA Mariner 246 374 -212 2130 145 0 0 chr6 25975382 25975678 -156439564 + AluSx SINE Alu 1 296 -16 892 194 10 53 chr6 25975678 25975745 -156439497 + MARNA DNA Mariner 374 442 -144 309 278 52 52 chr6 25975975 25976090 -156439152 + L2 LINE L2 3158 3272 0 2528 76 58 3 chr6 25976646 25976989 -156438253 + L1PA12 LINE L1 5807 6168 0 313 47 0 0 chr6 25977153 25977196 -156438046 - L1PA15 LINE L1 -8 6157 6115 839 73 122 79 chr6 25977196 25977360 -156437882 - L1PA14 LINE L1 -129 6032 5862 2385 105 0 0 chr6 25977361 25977665 -156437577 - AluSx SINE Alu -8 304 1 417 282 134 38 chr6 25981949 25982158 -156433084 - MIR SINE MIR -32 230 2 243 310 69 0 chr6 25982622 25982709 -156432533 + MER119 DNA MER1_type 1 93 -490 438 119 0 0 chr6 25982753 25982812 -156432430 + MER119 DNA MER1_type 523 581 -2 270 289 19 10 chr6 25982962 25983066 -156432176 - L3 LINE CR1 -126 1451 1347 2005 135 3 3 chr6 25983068 25983364 -156431878 - AluSx SINE Alu -16 296 1 1510 203 50 0 chr6 25983389 25983729 -156431513 + L1MC4 LINE L1 7682 8038 -4 849 254 171 28 chr6 25984268 25984768 -156430474 + L2 LINE L2 2732 3312 -1 235 345 35 0 chr6 25985125 25985212 -156430030 - L2 LINE L2 -537 2777 2688 523 237 10 0 chr6 25985407 25985504 -156429738 - MER2 DNA MER2_type -247 98 1 409 330 73 6 chr6 25985556 25985769 -156429473 + MIR SINE MIR 5 236 -26 2344 81 0 19 chr6 25985969 25986276 -156428966 - AluY SINE Alu -10 301 1 2298 103 0 0 chr6 25986322 25986614 -156428628 - AluSx SINE Alu -20 292 1 25 51 0 0 chr6 25986945 25986984 -156428258 + AT_rich Low_complexity Low_complexity 1 39 0 2338 94 3 0 chr6 25987261 25987569 -156427673 - AluSg SINE Alu -1 309 1 21 0 0 0 chr6 25988954 25988975 -156426267 + AT_rich Low_complexity Low_complexity 1 21 0 1630 163 47 11 chr6 25989010 25989287 -156425955 + AluJb SINE Alu 1 287 -25 504 137 0 0 chr6 25989307 25989380 -156425862 + AluJ/FRAM SINE Alu 215 287 -25 341 269 108 0 chr6 25989747 25989840 -156425402 + MIR SINE MIR 49 151 -111 5319 53 3 11 chr6 25990453 25991088 -156424154 + SVA Other Other 757 1386 0 270 229 0 0 chr6 25993034 25993104 -156422138 + (TA)n Simple_repeat Simple_repeat 2 71 0 195 69 0 0 chr6 25993346 25993375 -156421867 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 2280 86 0 0 chr6 25993394 25993672 -156421570 + AluSc SINE Alu 1 278 -31 22 0 0 0 chr6 25993683 25993705 -156421537 + AT_rich Low_complexity Low_complexity 1 22 0 2371 81 0 7 chr6 25994018 25994316 -156420926 - AluSx SINE Alu -8 304 9 251 255 71 10 chr6 25994340 25994438 -156420804 - L1MC4 LINE L1 -26 8016 7913 727 211 0 0 chr6 25994558 25994691 -156420551 - FLAM_A SINE Alu 0 133 1 2129 99 39 0 chr6 25994952 25995234 -156420008 + AluSp SINE Alu 1 293 -20 27 62 0 0 chr6 25998241 25998289 -156416953 + AT_rich Low_complexity Low_complexity 1 48 0 2303 99 0 3 chr6 25998442 25998735 -156416507 - AluSx SINE Alu -20 292 1 862 215 54 5 chr6 25998891 25999096 -156416146 - MIR SINE MIR -18 244 30 2495 77 0 0 chr6 25999105 25999404 -156415838 - AluY SINE Alu -12 299 1 373 210 58 94 chr6 25999435 25999573 -156415669 - L1MC4 LINE L1 -24 8018 5945 25 0 0 0 chr6 26000155 26000180 -156415062 + AT_rich Low_complexity Low_complexity 1 25 0 749 181 0 0 chr6 26001510 26001643 -156413599 + FLAM_C SINE Alu 1 133 0 23 0 0 0 chr6 26002602 26002625 -156412617 + AT_rich Low_complexity Low_complexity 1 23 0 2029 186 123 90 chr6 26002630 26003330 -156411912 - LTR48 LTR ERV1 0 787 59 1661 130 6 102 chr6 26003330 26003653 -156411589 + AluSx SINE Alu 3 294 -18 2029 186 123 90 chr6 26003653 26003711 -156411531 - LTR48 LTR ERV1 -728 59 4 451 200 47 33 chr6 26003807 26003957 -156411285 - MER104 DNA Tc2 0 180 29 6881 115 5 9 chr6 26004209 26005182 -156410060 + LTR5 LTR ERVK 1 969 0 654 265 185 45 chr6 26005457 26005835 -156409407 - L2 LINE L2 -504 2810 2380 2574 62 0 0 chr6 26005835 26006142 -156409100 - AluY SINE Alu -4 307 1 312 272 28 28 chr6 26006207 26006387 -156408855 + L1ME4a LINE L1 5942 6121 0 1807 100 115 7 chr6 26006410 26006679 -156408563 + AluSc SINE Alu 5 302 -7 1932 153 4 0 chr6 26006806 26007087 -156408155 + AluJo SINE Alu 1 282 -30 305 231 11 124 chr6 26008579 26008765 -156406477 + L2 LINE L2 2927 3091 -181 243 243 14 27 chr6 26009039 26009113 -156406129 + L2 LINE L2 3200 3272 0 2266 91 14 3 chr6 26009617 26009914 -156405328 - AluY SINE Alu -11 300 1 1679 170 42 10 chr6 26011006 26011295 -156403947 + AluJo SINE Alu 2 299 -13 222 37 0 0 chr6 26011414 26011441 -156403801 + (A)n Simple_repeat Simple_repeat 1 27 0 744 204 0 0 chr6 26011448 26011580 -156403662 + FLAM_A SINE Alu 2 133 0 656 186 0 0 chr6 26011764 26011861 -156403381 + MER2 DNA MER2_type 1 97 -248 2105 125 0 20 chr6 26011861 26012165 -156403077 + AluSx SINE Alu 1 298 -14 1092 273 87 3 chr6 26012208 26012508 -156402734 + MER119 DNA MER1_type 1 325 -258 626 243 20 7 chr6 26012540 26012692 -156402550 + MER45A DNA AcHobo 16 169 -9 238 270 0 0 chr6 26012707 26012781 -156402461 + L1MD2 LINE L1 6154 6227 -132 340 146 48 0 chr6 26012786 26012889 -156402353 + (TA)n Simple_repeat Simple_repeat 2 109 0 21 95 0 0 chr6 26012920 26012983 -156402259 + AT_rich Low_complexity Low_complexity 1 63 0 1453 221 7 4 chr6 26012983 26013263 -156401979 - AluJo SINE Alu -31 281 1 2529 85 0 0 chr6 26013265 26013571 -156401671 - AluY SINE Alu -5 306 1 885 143 0 0 chr6 26013582 26013708 -156401534 - FLAM_C SINE Alu -17 126 1 244 204 19 0 chr6 26013739 26013793 -156401449 + MER119 DNA MER1_type 528 582 -1 3535 102 10 12 chr6 26013900 26014401 -156400841 - LTR3b LTR ERVK 0 500 1 2021 128 3 13 chr6 26014495 26014801 -156400441 - AluSx SINE Alu -9 303 1 852 277 57 14 chr6 26014854 26015208 -156400034 + L1ME4a LINE L1 5556 5924 -197 246 203 51 13 chr6 26015224 26015303 -156399939 + L1ME4a LINE L1 6030 6111 -10 21 0 0 0 chr6 26015319 26015340 -156399902 + AT_rich Low_complexity Low_complexity 1 21 0 1693 161 17 3 chr6 26015400 26015691 -156399551 + AluJb SINE Alu 5 299 -13 2213 110 3 0 chr6 26015829 26016152 -156399090 - AluSx SINE Alu 0 324 1 303 319 14 36 chr6 26016152 26016290 -156398952 - MIR SINE MIR -96 166 32 977 159 24 6 chr6 26016920 26017090 -156398152 + MLT1B LTR MaLR 1 173 -217 804 168 114 73 chr6 26017090 26017310 -156397932 + AluJo SINE Alu 49 277 -35 708 114 179 29 chr6 26017336 26017476 -156397766 + MLT1B LTR MaLR 165 325 -65 2150 105 10 42 chr6 26018050 26018387 -156396855 + AluSx SINE Alu 1 327 0 632 238 0 0 chr6 26019127 26019253 -156395989 + FLAM_C SINE Alu 3 128 -15 222 365 41 7 chr6 26019940 26020085 -156395157 - L2 LINE L2 -337 2976 2827 2175 98 40 3 chr6 26021057 26021354 -156393888 + AluSx SINE Alu 1 308 -4 237 200 0 125 chr6 26021385 26021431 -156393811 - MIR SINE MIR 0 262 212 789 170 17 139 chr6 26021431 26021524 -156393718 - MER3 DNA MER1_type -4 205 102 2240 95 18 0 chr6 26021524 26021808 -156393434 + AluSq SINE Alu 3 291 -22 789 170 17 139 chr6 26021808 26021819 -156393423 - MER3 DNA MER1_type -107 102 91 198 0 0 0 chr6 26021819 26021841 -156393401 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 789 170 17 139 chr6 26021841 26021965 -156393277 - MER3 DNA MER1_type -118 91 4 237 200 0 125 chr6 26021965 26021998 -156393244 - MIR SINE MIR -50 212 193 2279 95 23 0 chr6 26022154 26022458 -156392784 - AluSp SINE Alu -2 311 1 2033 153 7 0 chr6 26023316 26023611 -156391631 + AluSx SINE Alu 1 297 -15 583 234 13 32 chr6 26024000 26024158 -156391084 + L1MD3 LINE L1 7797 7951 -44 256 118 53 105 chr6 26024261 26024307 -156390935 + L1MD3 LINE L1 7924 7966 -29 2192 108 0 7 chr6 26024307 26024602 -156390640 + AluSx SINE Alu 1 293 -19 256 118 53 105 chr6 26024602 26024631 -156390611 + L1MD3 LINE L1 7966 7995 0 216 0 0 0 chr6 26024653 26024677 -156390565 + (TG)n Simple_repeat Simple_repeat 2 25 0 1804 114 0 0 chr6 26025800 26026037 -156389205 + AluSq SINE Alu 1 237 -76 21 0 0 0 chr6 26026488 26026509 -156388733 + AT_rich Low_complexity Low_complexity 1 21 0 958 120 0 0 chr6 26026847 26026980 -156388262 + FLAM_C SINE Alu 1 133 0 2055 118 11 0 chr6 26027071 26027380 -156387862 + AluSx SINE Alu 1 312 0 2030 111 7 7 chr6 26027844 26028123 -156387119 - AluSx SINE Alu -31 281 3 1910 163 0 3 chr6 26028158 26028452 -156386790 + AluJb SINE Alu 7 299 -13 2168 102 28 0 chr6 26028555 26028839 -156386403 + AluSg SINE Alu 1 292 -18 251 314 0 0 chr6 26029309 26029379 -156385863 - L2 LINE L2 -2 3270 3201 521 226 8 68 chr6 26029478 26029552 -156385690 - MER45A DNA AcHobo -1403 178 114 2384 85 3 0 chr6 26029552 26029846 -156385396 + AluSx SINE Alu 1 295 -17 521 226 8 68 chr6 26029846 26029904 -156385338 - MER45A DNA AcHobo -1467 114 54 227 182 73 0 chr6 26030116 26030171 -156385071 + L2 LINE L2 2997 3055 -217 1798 167 10 10 chr6 26030205 26030504 -156384738 - AluJb SINE Alu -9 303 5 1544 136 5 0 chr6 26030890 26031110 -156384132 - AluJo SINE Alu -52 260 40 2277 106 0 10 chr6 26031691 26031992 -156383250 - AluSx SINE Alu -14 298 1 376 241 48 0 chr6 26032722 26032805 -156382437 + L2 LINE L2 3168 3254 -18 23 78 0 0 chr6 26032833 26032884 -156382358 + AT_rich Low_complexity Low_complexity 1 51 0 1953 156 0 7 chr6 26033082 26033384 -156381858 - AluJo SINE Alu -12 300 1 515 299 86 30 chr6 26033386 26033620 -156381622 - MIR SINE MIR -5 257 11 644 262 77 0 chr6 26035206 26035389 -156379853 - MIR SINE MIR 0 262 66 2229 127 0 13 chr6 26035956 26036272 -156378970 + AluSx SINE Alu 1 312 0 1808 157 7 7 chr6 26036303 26036603 -156378639 + AluJb SINE Alu 1 300 -12 2069 137 0 10 chr6 26037108 26037415 -156377827 + AluSx SINE Alu 1 304 -8 636 289 11 16 chr6 26038388 26038578 -156376664 - MIR SINE MIR -6 256 68 341 122 20 0 chr6 26088655 26088733 -156326509 + Alu SINE Alu 234 312 0 2030 111 7 7 chr6 26089197 26089476 -156325766 - AluSx SINE Alu -31 281 3 1944 160 0 3 chr6 26089511 26089805 -156325437 + AluJb SINE Alu 7 299 -13 2166 106 28 0 chr6 26089908 26090192 -156325050 + AluSg SINE Alu 1 292 -18 251 314 0 0 chr6 26090662 26090732 -156324510 - L2 LINE L2 -2 3270 3201 517 221 8 69 chr6 26090832 26090904 -156324338 - MER45A DNA AcHobo -1405 176 114 2311 99 3 0 chr6 26090904 26091198 -156324044 + AluSx SINE Alu 1 295 -17 517 221 8 69 chr6 26091198 26091256 -156323986 - MER45A DNA AcHobo -1467 114 54 227 182 73 0 chr6 26091468 26091523 -156323719 + L2 LINE L2 2997 3055 -217 1878 168 0 10 chr6 26091557 26091860 -156323382 - AluJb SINE Alu -8 304 5 1544 136 5 0 chr6 26092246 26092466 -156322776 - AluJo SINE Alu -52 260 40 2301 106 0 10 chr6 26093047 26093350 -156321892 - AluSx SINE Alu -12 300 1 343 232 0 0 chr6 26094080 26094149 -156321093 + L2 LINE L2 3168 3236 -36 27 100 0 0 chr6 26094152 26094242 -156321000 + AT_rich Low_complexity Low_complexity 1 90 0 1982 152 0 7 chr6 26094440 26094742 -156320500 - AluJo SINE Alu -12 300 1 470 295 86 30 chr6 26094744 26094978 -156320264 - MIR SINE MIR -5 257 11 623 258 75 0 chr6 26096467 26096653 -156318589 - MIR SINE MIR 0 262 63 2274 120 0 13 chr6 26097218 26097534 -156317708 + AluSx SINE Alu 1 312 0 1826 157 7 7 chr6 26097565 26097865 -156317377 + AluJb SINE Alu 1 300 -12 2088 137 0 10 chr6 26098370 26098677 -156316565 + AluSx SINE Alu 1 304 -8 571 295 11 16 chr6 26099651 26099841 -156315401 - MIR SINE MIR -6 256 68 1337 212 116 59 chr6 26100083 26100201 -156315041 + MER4A LTR ERV1 5 115 -549 2478 83 3 0 chr6 26100201 26100513 -156314729 - AluSp SINE Alu 0 313 1 1337 212 116 59 chr6 26100513 26100852 -156314390 + MER4A LTR ERV1 115 488 -176 1276 127 0 0 chr6 26100855 26101028 -156314214 - AluSg/x SINE Alu -6 304 132 371 154 138 0 chr6 26101034 26101099 -156314143 - tRNA-Ile-ATT tRNA tRNA -3 74 1 1214 137 0 26 chr6 26101105 26101295 -156313947 + MER4B LTR ERV1 426 610 0 6218 4 0 0 chr6 26101420 26102096 -156313146 + L1PA2 LINE L1 5477 6152 -3 277 298 48 30 chr6 26102225 26102393 -156312849 + L1ME LINE L1 49 219 -5900 459 110 0 73 chr6 26102433 26102515 -156312727 - Alu SINE Alu -8 302 227 565 252 55 39 chr6 26102536 26102847 -156312395 + L1ME LINE L1 2277 2589 -3540 2302 117 0 0 chr6 26102899 26103206 -156312036 - AluSq SINE Alu -6 307 1 771 278 51 64 chr6 26103206 26103525 -156311717 + L1ME LINE L1 4521 4832 -1297 1297 166 136 11 chr6 26103525 26103790 -156311452 + AluJb SINE Alu 5 302 0 771 278 51 64 chr6 26103790 26103998 -156311244 + L1ME LINE L1 4832 5041 -1088 1168 118 0 18 chr6 26104025 26104195 -156311047 - FRAM SINE Alu -12 164 1 650 278 47 18 chr6 26104200 26104676 -156310566 + L1ME LINE L1 5069 5558 -595 2437 78 0 0 chr6 26105088 26105383 -156309859 - AluSq SINE Alu -18 295 1 189 0 0 0 chr6 26105386 26105407 -156309835 + (T)n Simple_repeat Simple_repeat 1 21 0 26 30 0 0 chr6 26106117 26106150 -156309092 + AT_rich Low_complexity Low_complexity 1 33 0 2358 94 0 16 chr6 26106150 26106468 -156308774 + AluSq SINE Alu 1 313 0 342 45 0 0 chr6 26106471 26106515 -156308727 + (CA)n Simple_repeat Simple_repeat 1 44 0 2255 109 0 26 chr6 26106967 26107278 -156307964 + AluSc SINE Alu 1 303 -6 1222 119 0 0 chr6 26107701 26107861 -156307381 + AluSg/x SINE Alu 137 296 -16 180 71 0 0 chr6 26107862 26107870 -156307372 + (CA)n Simple_repeat Simple_repeat 1 8 -20 2373 72 0 44 chr6 26107870 26108189 -156307053 + AluY SINE Alu 1 305 -6 180 71 0 0 chr6 26108189 26108208 -156307034 + (CA)n Simple_repeat Simple_repeat 7 28 0 186 358 15 0 chr6 26108322 26108389 -156306853 - L2 LINE L2 -14 3258 3191 1838 143 3 59 chr6 26109745 26110067 -156305175 + AluJo SINE Alu 2 305 -7 979 255 214 21 chr6 26110794 26111229 -156304013 + LTR33 LTR ERVL 2 520 -1 3111 75 82 7 chr6 26111255 26111707 -156303535 + LTR19A LTR ERV1 1 486 0 994 123 45 7 chr6 26112639 26112794 -156302448 - AluSq SINE Alu -16 297 137 247 235 0 0 chr6 26112846 26112897 -156302345 + (CACG)n Simple_repeat Simple_repeat 2 52 0 339 306 48 43 chr6 26113408 26113617 -156301625 + LTR67 LTR ERVL 348 557 0 22 0 0 0 chr6 26113651 26113673 -156301569 + AT_rich Low_complexity Low_complexity 1 22 0 332 179 0 15 chr6 26114105 26114172 -156301070 + MLT1K LTR MaLR 496 561 -27 294 246 64 18 chr6 26114175 26114285 -156300957 - MIR SINE MIR 0 262 148 1723 106 4 31 chr6 26114405 26114576 -156300666 - AluSx SINE Alu -9 303 140 2346 119 0 0 chr6 26114576 26114886 -156300356 - AluSx SINE Alu 0 312 3 1723 106 4 31 chr6 26114886 26114970 -156300272 - AluSx SINE Alu -172 140 55 1617 181 51 0 chr6 26114984 26115260 -156299982 + AluJo SINE Alu 1 290 -22 317 228 66 49 chr6 26115271 26115353 -156299889 + L1 LINE L1 4735 4785 -1361 1644 175 0 0 chr6 26115353 26115610 -156299632 + AluSx SINE Alu 1 257 -55 317 228 66 49 chr6 26115610 26115704 -156299538 + L1 LINE L1 4785 4876 -1270 1913 114 44 0 chr6 26115704 26115975 -156299267 + AluSx SINE Alu 1 283 -29 408 188 10 31 chr6 26115978 26116074 -156299168 + L1MC4 LINE L1 6514 6607 -1435 980 128 0 0 chr6 26116075 26116208 -156299034 - AluSg/x SINE Alu -36 274 142 2210 81 0 18 chr6 26116208 26116522 -156298720 - AluY SINE Alu 0 309 1 1942 145 3 17 chr6 26116527 26116823 -156298419 - AluSx SINE Alu -20 292 1 963 127 0 8 chr6 26117563 26117697 -156297545 + FLAM_C SINE Alu 1 133 -10 397 125 0 0 chr6 26117700 26117756 -156297486 + U6 snRNA snRNA 1 56 -51 2344 99 3 0 chr6 26117982 26118276 -156296966 - AluSp SINE Alu -18 295 1 367 298 99 6 chr6 26118649 26118830 -156296412 + MIR SINE MIR 51 248 -14 2284 87 0 3 chr6 26118852 26119140 -156296102 + AluSx SINE Alu 11 297 -15 432 212 96 48 chr6 26119923 26120069 -156295173 - MIR3 SINE MIR -11 197 45 295 295 0 0 chr6 26120200 26120278 -156294964 + MIR3 SINE MIR 121 198 -10 2478 59 0 16 chr6 26120433 26120738 -156294504 + AluY SINE Alu 1 300 -11 1121 110 37 21 chr6 26120877 26121068 -156294174 + L1MA9 LINE L1 6119 6312 0 2259 125 0 3 chr6 26122776 26123089 -156292153 + AluSx SINE Alu 1 312 0 652 246 77 27 chr6 26123246 26123466 -156291776 + Charlie8 DNA MER1_type 46 276 -2141 1728 158 27 31 chr6 26123727 26124019 -156291223 + AluSx SINE Alu 4 294 -18 2426 89 0 13 chr6 26124530 26124846 -156290396 + AluSx SINE Alu 1 312 0 821 175 142 57 chr6 26125112 26125358 -156289884 + ORSL DNA AcHobo 2 268 -7 2010 120 0 7 chr6 26125522 26125814 -156289428 + AluSx SINE Alu 22 311 -1 181 0 69 0 chr6 26125821 26125850 -156289392 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 231 314 218 0 chr6 26126547 26126671 -156288571 - MIR SINE MIR -81 181 31 211 226 0 32 chr6 26127369 26127431 -156287811 + C-rich Low_complexity Low_complexity 4 63 0 422 218 21 115 chr6 26128462 26128696 -156286546 - L2 LINE L2 0 3313 3102 1415 185 12 52 chr6 26128747 26129245 -156285997 - MLT1B LTR MaLR -2 465 1 617 133 0 0 chr6 26129296 26129386 -156285856 - LTR12 LTR ERV1 0 714 625 317 146 58 87 chr6 26129386 26129489 -156285753 - LTR30 LTR ERV1 -92 614 378 822 167 89 45 chr6 26129591 26129882 -156285360 - LTR12 LTR ERV1 -481 1683 62 277 211 0 0 chr6 26129882 26129934 -156285308 - LTR30 LTR ERV1 -670 52 1 2185 249 73 19 chr6 26129953 26130679 -156284563 - L2 LINE L2 -382 2932 2168 2133 80 6 61 chr6 26130989 26131124 -156284118 + AluSx SINE Alu 1 142 -170 2346 93 0 10 chr6 26131124 26131434 -156283808 + AluSx SINE Alu 1 307 -5 2133 80 6 61 chr6 26131434 26131609 -156283633 + AluSx SINE Alu 142 294 -18 21 0 0 0 chr6 26131762 26131783 -156283459 + AT_rich Low_complexity Low_complexity 1 21 0 1533 197 3 58 chr6 26131787 26131967 -156283275 - AluJo SINE Alu 0 312 157 2316 67 30 7 chr6 26131967 26132266 -156282976 - AluY SINE Alu -5 306 1 1533 197 3 58 chr6 26132266 26132415 -156282827 - AluJo SINE Alu -155 157 1 692 99 0 0 chr6 26132471 26132572 -156282670 - L1MB3 LINE L1 0 6183 6083 908 103 0 15 chr6 26132673 26132809 -156282433 + L1MB3 LINE L1 5840 5973 -210 863 194 0 0 chr6 26132809 26132955 -156282287 + FRAM SINE Alu 2 182 0 316 0 0 0 chr6 26132955 26132990 -156282252 + (TAA)n Simple_repeat Simple_repeat 2 180 0 232 164 60 134 chr6 26133163 26133230 -156282012 + AluJo SINE Alu 87 148 -154 864 198 0 19 chr6 26133861 26134018 -156281224 + AluJo SINE Alu 129 282 -30 32 26 0 0 chr6 26134018 26134057 -156281185 + AT_rich Low_complexity Low_complexity 1 39 0 266 170 0 0 chr6 26134146 26134199 -156281043 - MLT2B1 LTR ERVL -4 516 464 339 179 0 0 chr6 26134203 26134270 -156280972 + (TG)n Simple_repeat Simple_repeat 2 68 0 2175 178 125 19 chr6 26134286 26134718 -156280524 - MLT2B1 LTR ERVL -42 478 1 559 265 65 20 chr6 26136401 26136601 -156278641 + MIR SINE MIR 39 247 -15 1246 195 0 0 chr6 26136725 26136935 -156278307 + MER58A DNA MER1_type 15 224 0 484 265 78 43 chr6 26137635 26137984 -156277258 + L2 LINE L2 2712 3069 -244 2214 110 3 0 chr6 26137994 26138286 -156276956 + AluSx SINE Alu 1 293 -19 353 237 0 126 chr6 26138365 26138500 -156276742 - L1MC4a LINE L1 -1149 6659 6542 21 0 0 0 chr6 26138505 26138526 -156276716 + AT_rich Low_complexity Low_complexity 1 21 0 2448 81 7 0 chr6 26138551 26138858 -156276384 - AluSg1 SINE Alu 0 309 1 26 30 0 0 chr6 26138944 26138977 -156276265 + AT_rich Low_complexity Low_complexity 1 33 0 1573 141 37 30 chr6 26139035 26139334 -156275908 - L1MC3 LINE L1 0 7785 7485 512 287 60 76 chr6 26139544 26140060 -156275182 - HAL1b LINE L1 -769 579 72 6265 86 15 8 chr6 26140097 26140390 -156274852 - L1PB1 LINE L1 -2 6149 5860 2399 95 3 0 chr6 26140390 26140696 -156274546 + AluSc SINE Alu 1 307 -2 6265 86 15 8 chr6 26140696 26141701 -156273541 - L1PB1 LINE L1 -291 5860 4877 9301 156 45 5 chr6 26141701 26143178 -156272064 - L1PBa LINE L1 -2548 4314 2897 180 0 0 0 chr6 26143178 26143198 -156272044 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9301 156 45 5 chr6 26143198 26144524 -156270718 - L1PBa LINE L1 -3965 2897 1392 929 220 5 0 chr6 26144521 26144712 -156270530 - L1PBa LINE L1 -6666 197 6 * 2061 134 0 0 chr6 26144985 26145297 -156269945 - AluSq SINE Alu 0 312 1 1806 141 61 17 chr6 26145375 26145672 -156269570 - AluJb SINE Alu -2 310 1 204 245 104 28 chr6 26146435 26146541 -156268701 + MIR SINE MIR 20 133 -129 2031 122 37 0 chr6 26146764 26147059 -156268183 + AluSx SINE Alu 1 306 -6 840 194 0 0 chr6 26147075 26147243 -156267999 - AluJb SINE Alu 0 305 138 210 118 0 0 chr6 26147395 26147429 -156267813 + (T)n Simple_repeat Simple_repeat 1 34 0 1970 136 14 0 chr6 26147750 26148036 -156267206 + AluSx SINE Alu 1 290 -22 2552 53 0 28 chr6 26148462 26148782 -156266460 + AluY SINE Alu 1 311 0 1794 154 59 3 chr6 26148967 26149253 -156265989 + AluJb SINE Alu 3 304 -8 1942 139 17 0 chr6 26149325 26149613 -156265629 - AluSx SINE Alu -19 293 1 365 118 9 173 chr6 26150407 26150517 -156264725 + LTR9 LTR ERV1 438 529 -83 26 50 0 0 chr6 26150862 26150902 -156264340 + AT_rich Low_complexity Low_complexity 1 40 0 494 91 0 0 chr6 26151389 26151466 -156263776 - Alu SINE Alu -2 310 234 545 263 20 40 chr6 26151466 26151590 -156263652 + L1ME4a LINE L1 5703 5823 -298 2173 133 0 0 chr6 26151590 26151891 -156263351 + AluSx SINE Alu 1 301 -11 545 263 20 40 chr6 26151891 26151964 -156263278 + L1ME4a LINE L1 5823 5896 -225 284 261 44 33 chr6 26152018 26152198 -156263044 + L1ME4a LINE L1 5882 6063 -58 332 212 61 38 chr6 26152361 26152377 -156262865 - L1MC4a LINE L1 -1800 6008 5994 694 203 0 15 chr6 26152377 26152510 -156262732 - FLAM_A SINE Alu -2 131 1 332 212 61 38 chr6 26152510 26152625 -156262617 - L1MC4a LINE L1 -1814 5994 5874 512 120 0 11 chr6 26152877 26152969 -156262273 + (TG)n Simple_repeat Simple_repeat 2 92 0 327 232 22 103 chr6 26153542 26153727 -156261515 - MIR3 SINE MIR -9 199 30 1821 143 17 17 chr6 26154044 26154165 -156261077 + AluJb SINE Alu 1 121 -191 2121 97 73 0 chr6 26154165 26154453 -156260789 - AluSx SINE Alu -3 309 1 1821 143 17 17 chr6 26154453 26154625 -156260617 + AluJb SINE Alu 120 294 -18 234 0 0 0 chr6 26154786 26154812 -156260430 + (TG)n Simple_repeat Simple_repeat 2 27 0 1217 142 18 36 chr6 26155313 26155532 -156259710 + L1MA5 LINE L1 6001 6215 -85 2182 102 7 3 chr6 26156284 26156587 -156258655 - AluSx SINE Alu -3 309 6 304 311 15 8 chr6 26157125 26157257 -156257985 - MER5B DNA MER1_type -44 134 2 23 0 0 0 chr6 26157540 26157563 -156257679 + AT_rich Low_complexity Low_complexity 1 23 0 1676 131 3 53 chr6 26157724 26158006 -156257236 + AluSq SINE Alu 1 268 -45 405 276 47 102 chr6 26158532 26159130 -156256112 + HAL1 LINE L1 810 1374 -1133 415 89 48 16 chr6 26159134 26159258 -156255984 + (TA)n Simple_repeat Simple_repeat 2 129 0 302 160 0 0 chr6 26159261 26159311 -156255931 + L1MC4 LINE L1 6654 6703 -1339 463 276 131 67 chr6 26159318 26159599 -156255643 + HAL1 LINE L1 1400 1722 -785 2305 101 0 0 chr6 26159599 26159896 -156255346 + AluSg SINE Alu 1 297 -13 463 276 131 67 chr6 26159896 26160064 -156255178 + HAL1 LINE L1 1722 1878 -629 2103 118 14 3 chr6 26160672 26160968 -156254274 - AluSq SINE Alu -14 299 1 1573 103 121 40 chr6 26161010 26161282 -156253960 - AluSg1 SINE Alu -13 296 3 256 256 128 96 chr6 26161373 26161462 -156253780 - HAL1 LINE L1 -872 1635 1550 2352 119 0 0 chr6 26161462 26161774 -156253468 - AluSx SINE Alu 0 312 1 256 256 128 96 chr6 26161774 26161978 -156253264 - HAL1 LINE L1 -957 1550 1319 2297 96 7 0 chr6 26161978 26162279 -156252963 - AluSx SINE Alu -9 303 1 256 256 128 96 chr6 26162279 26162444 -156252798 - HAL1 LINE L1 -1188 1319 1161 232 326 65 11 chr6 26163644 26163736 -156251506 + MIR SINE MIR 9 105 -157 2364 78 0 7 chr6 26167839 26168132 -156247110 + AluY SINE Alu 1 291 -20 1981 180 24 3 chr6 26168503 26168837 -156246405 + MER58B DNA MER1_type 1 341 0 1186 192 0 14 chr6 26169845 26170059 -156245183 - AluJo SINE Alu -101 211 1 9530 107 65 12 chr6 26170138 26170921 -156244321 - Tigger3(Golem) DNA MER2_type 0 3029 2289 2193 122 0 0 chr6 26170921 26171217 -156244025 + AluJb SINE Alu 1 296 -16 9530 107 65 12 chr6 26171217 26171915 -156243327 - Tigger3(Golem) DNA MER2_type -740 2289 1470 2959 143 69 20 chr6 26171911 26172108 -156243134 - Tigger3(Golem) DNA MER2_type -2465 564 378 * 1911 150 0 14 chr6 26172108 26172423 -156242819 - AluJb SINE Alu 0 311 1 2959 143 69 20 chr6 26172423 26172762 -156242480 - Tigger3(Golem) DNA MER2_type -2651 378 1 996 203 61 71 chr6 26173055 26173381 -156241861 - L1MD2 LINE L1 -10 6349 6027 1475 126 25 107 chr6 26173496 26173814 -156241428 - MLT1B LTR MaLR -91 299 13 2162 115 0 0 chr6 26173823 26174110 -156241132 + AluSx SINE Alu 1 287 -25 1935 153 10 7 chr6 26174165 26174465 -156240777 + AluSx SINE Alu 1 301 -11 2603 141 12 73 chr6 26174666 26174755 -156240487 + MER101 LTR ERV1 1 94 -380 1535 142 78 25 chr6 26174755 26175036 -156240206 + AluJb SINE Alu 1 296 -16 2603 141 12 73 chr6 26175036 26175451 -156239791 + MER101 LTR ERV1 94 474 0 551 223 208 20 chr6 26175534 26175736 -156239506 + L1ME1 LINE L1 5919 6158 -8 * 573 190 112 33 chr6 26175567 26175741 -156239501 + L1MA10 LINE L1 5970 6129 -188 1669 164 24 13 chr6 26175741 26176039 -156239203 - AluJb SINE Alu -11 301 1 573 190 112 33 chr6 26176039 26176052 -156239190 + L1MA10 LINE L1 6129 6317 0 1256 191 82 21 chr6 26176278 26176560 -156238682 - MER58B DNA MER1_type -6 335 37 416 269 134 19 chr6 26177476 26177692 -156237550 + MIR SINE MIR 12 252 -10 621 298 18 22 chr6 26179814 26180042 -156235200 + MIR SINE MIR 24 250 -12 976 214 0 0 chr6 26180191 26180369 -156234873 + FRAM SINE Alu 1 175 -1 2724 140 17 9 chr6 26180492 26180914 -156234328 - MER61B LTR ERV1 0 425 1 1415 168 150 34 chr6 26181215 26181347 -156233895 + MLT1A1 LTR MaLR 1 116 -249 2232 114 0 13 chr6 26181347 26181653 -156233589 + AluSx SINE Alu 1 302 -10 1415 168 150 34 chr6 26181653 26181847 -156233395 + MLT1A1 LTR MaLR 116 365 0 667 276 30 0 chr6 26181882 26182081 -156233161 + MIR SINE MIR 58 262 0 243 250 80 20 chr6 26182543 26182643 -156232599 + L2 LINE L2 3142 3247 -25 1799 115 51 34 chr6 26183286 26183581 -156231661 - AluSx SINE Alu -12 300 1 602 255 37 30 chr6 26184493 26184696 -156230546 + MIR SINE MIR 59 262 0 2163 115 3 0 chr6 26184922 26185210 -156230032 - AluSp SINE Alu -22 291 3 226 77 19 39 chr6 26185570 26185602 -156229640 + LTR66 LTR ERVL 391 423 -187 402 21 0 0 chr6 26185602 26185649 -156229593 + (CA)n Simple_repeat Simple_repeat 2 48 0 226 77 19 39 chr6 26185649 26185668 -156229574 + LTR66 LTR ERVL 423 441 -169 * 3455 143 91 125 chr6 26185664 26186578 -156228664 + MER21A LTR ERV1 13 895 -36 2338 112 0 0 chr6 26187522 26187827 -156227415 + AluSx SINE Alu 1 305 -7 204 231 0 0 chr6 26188428 26188467 -156226775 + CT-rich Low_complexity Low_complexity 1 39 0 273 98 0 0 chr6 26188470 26188511 -156226731 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 1077 193 177 4 chr6 26188519 26188773 -156226469 - AluJo SINE Alu -3 299 2 324 140 0 35 chr6 26188776 26188833 -156226409 - AluJo/FLAM SINE Alu -170 132 78 2002 96 0 0 chr6 26189270 26189520 -156225722 + AluSc SINE Alu 39 288 -21 1936 138 0 10 chr6 26189527 26189818 -156225424 + AluSx SINE Alu 1 288 -24 361 251 136 66 chr6 26189896 26190071 -156225171 + L1ME4a LINE L1 5681 5842 -279 698 183 0 23 chr6 26190071 26190202 -156225040 - FLAM_A SINE Alu -5 128 1 361 251 136 66 chr6 26190202 26190432 -156224810 + L1ME4a LINE L1 5842 6121 0 559 128 186 0 chr6 26190443 26190545 -156224697 + AluSq/x SINE Alu 2 122 -190 405 81 0 0 chr6 26190653 26190715 -156224527 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 485 200 25 58 chr6 26191812 26191932 -156223310 + MER21B LTR ERV1 384 499 -364 5031 147 30 1 chr6 26192016 26192830 -156222412 - L1MB7 LINE L1 -16 6168 5332 1359 185 37 63 chr6 26192830 26193239 -156222003 - MLT1C LTR MaLR 0 390 6 3234 199 24 30 chr6 26193248 26193867 -156221375 - L1MB7 LINE L1 -2192 3954 3340 1545 190 28 11 chr6 26193867 26194017 -156221225 - AluJb SINE Alu -23 289 130 2343 96 10 0 chr6 26194017 26194310 -156220932 - AluSx SINE Alu -16 296 1 1545 190 28 11 chr6 26194310 26194443 -156220799 - AluJb SINE Alu -182 130 1 3234 199 24 30 chr6 26194443 26194630 -156220612 - L1MB7 LINE L1 -2806 3340 3153 1971 168 3 0 chr6 26194865 26195175 -156220067 + AluSx SINE Alu 1 311 -1 2204 91 0 20 chr6 26197273 26197571 -156217671 + AluY SINE Alu 1 292 -19 2476 81 0 3 chr6 26197780 26198090 -156217152 + AluSc SINE Alu 1 309 0 205 290 0 0 chr6 26198103 26198171 -156217071 + MIR SINE MIR 86 143 -65 1268 240 25 21 chr6 26198462 26198787 -156216455 + MLT1A2 LTR MaLR 1 326 -48 877 164 8 0 chr6 26199527 26199661 -156215581 + AluJo SINE Alu 1 135 -177 1499 187 23 40 chr6 26199727 26200027 -156215215 + AluJo SINE Alu 1 295 -17 247 258 106 68 chr6 26200545 26200677 -156214565 - L2 LINE L2 0 3272 3136 317 325 43 34 chr6 26201639 26201848 -156213394 + MIR SINE MIR 6 216 -46 2428 55 7 0 chr6 26202615 26202904 -156212338 + AluY SINE Alu 1 291 -20 323 190 0 25 chr6 26202947 26203026 -156212216 + GA-rich Low_complexity Low_complexity 3 79 0 244 253 91 30 chr6 26203079 26203178 -156212064 + L2 LINE L2 3202 3306 -7 2095 137 3 7 chr6 26203216 26203515 -156211727 + AluSx SINE Alu 1 298 -14 884 141 0 15 chr6 26203567 26203702 -156211540 + FLAM_C SINE Alu 1 133 0 221 312 113 87 chr6 26203909 26204300 -156210942 + L2 LINE L2 2819 3219 -53 210 207 35 0 chr6 26205008 26205066 -156210176 + A-rich Low_complexity Low_complexity 4 63 0 1881 124 0 22 chr6 26205141 26205414 -156209828 + AluSx SINE Alu 1 267 -45 676 279 92 23 chr6 26205467 26205821 -156209421 + L1MC4a LINE L1 5519 5804 -360 23 0 0 0 chr6 26206070 26206093 -156209149 + AT_rich Low_complexity Low_complexity 1 23 0 2252 113 0 0 chr6 26206142 26206435 -156208807 + AluSg SINE Alu 1 293 -17 1920 166 0 10 chr6 26206460 26206756 -156208486 + AluJb SINE Alu 2 294 -18 189 0 0 0 chr6 26208625 26208646 -156206596 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1687 177 6 22 chr6 26208945 26209261 -156205981 + AluJb SINE Alu 1 311 -1 443 90 42 28 chr6 26211711 26211855 -156203387 + (TA)n Simple_repeat Simple_repeat 1 146 0 369 261 187 15 chr6 26212710 26212844 -156202398 + MER91A DNA MER1_type 19 175 -21 230 323 0 0 chr6 26213459 26213521 -156201721 - tRNA-Ser(Sec) tRNA tRNA -28 62 1 191 216 40 68 chr6 26213607 26213681 -156201561 - MER5A DNA MER1_type -115 74 3 2211 114 0 7 chr6 26214169 26214466 -156200776 + AluSx SINE Alu 1 295 -17 27 62 0 0 chr6 26214782 26214830 -156200412 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr6 26214944 26214980 -156200262 + AT_rich Low_complexity Low_complexity 1 36 0 1354 191 24 0 chr6 26265645 26265891 -156149351 + AluJo SINE Alu 59 310 -2 346 182 39 0 chr6 26265891 26265968 -156149274 + L1ME4a LINE L1 5387 5466 -2342 1830 168 3 13 chr6 26265985 26266300 -156148942 + AluJb SINE Alu 1 312 0 555 241 118 0 chr6 26266302 26266489 -156148753 + L1MC4a LINE L1 5723 5931 -1877 2053 58 0 4 chr6 26266610 26266869 -156148373 - AluY SINE Alu -8 303 46 28 0 0 0 chr6 26266924 26266952 -156148290 + AT_rich Low_complexity Low_complexity 1 28 0 267 147 156 64 chr6 26267104 26267213 -156148029 + MER53 DNA DNA 1 119 -70 337 271 226 28 chr6 26268329 26268510 -156146732 - MIR SINE MIR -44 218 2 354 266 73 0 chr6 26268732 26268841 -156146401 + L2 LINE L2 3197 3313 0 573 269 138 29 chr6 26269004 26269380 -156145862 + L1MC4a LINE L1 5698 6114 -1694 477 243 104 35 chr6 26269430 26269689 -156145553 - HAL1 LINE L1 -38 2469 2193 2333 60 14 0 chr6 26270185 26270467 -156144775 - AluSc SINE Alu -23 286 1 321 234 110 7 chr6 26270544 26270698 -156144544 - HAL1 LINE L1 -354 2153 1984 381 269 108 48 chr6 26270925 26271174 -156144068 + L1ME4a LINE L1 5653 5916 -205 1380 273 75 57 chr6 26271238 26271520 -156143722 + L1MEd LINE L1 72 347 -5772 2363 112 0 0 chr6 26271520 26271832 -156143410 + AluSx SINE Alu 1 312 0 1380 273 75 57 chr6 26271832 26272142 -156143100 + L1MEd LINE L1 347 650 -5469 1656 186 31 17 chr6 26272142 26272432 -156142810 + AluJo SINE Alu 1 294 -18 1380 273 75 57 chr6 26272432 26272778 -156142464 + L1MEd LINE L1 650 1028 -5091 1529 256 261 6 chr6 26272778 26273468 -156141774 - L2 LINE L2 -298 3015 2156 2303 109 0 0 chr6 26274122 26274416 -156140826 - AluSx SINE Alu -18 294 1 454 150 10 60 chr6 26274469 26274569 -156140673 - MLT1A2 LTR MaLR 0 390 296 609 189 28 35 chr6 26274577 26274720 -156140522 - MLT1A2 LTR MaLR -229 145 4 305 237 46 99 chr6 26276077 26276381 -156138861 + HAL1 LINE L1 812 1099 -1408 737 246 23 100 chr6 26276415 26276577 -156138665 - MIR SINE MIR -2 260 124 2141 122 17 7 chr6 26276577 26276872 -156138370 + AluSx SINE Alu 1 298 -14 737 246 23 100 chr6 26276872 26276969 -156138273 - MIR SINE MIR -138 124 21 204 97 0 0 chr6 26277036 26277067 -156138175 + (CA)n Simple_repeat Simple_repeat 2 32 0 503 294 63 28 chr6 26277067 26277461 -156137781 + HAL1 LINE L1 1155 1562 -945 1686 104 24 21 chr6 26277461 26277748 -156137494 + L1MA4 LINE L1 6007 6294 -6 428 315 42 67 chr6 26277776 26277828 -156137414 + HAL1 LINE L1 1534 1586 -921 1916 147 6 52 chr6 26277828 26278155 -156137087 - AluJb SINE Alu 0 312 1 428 315 42 67 chr6 26278155 26278340 -156136902 + HAL1 LINE L1 1586 1765 -742 232 326 22 11 chr6 26278512 26278601 -156136641 + LTR67 LTR ERVL 105 194 -363 835 200 0 0 chr6 26278753 26278908 -156136334 + FRAM SINE Alu 20 174 -2 389 232 40 47 chr6 26278978 26279182 -156136060 + L1M4 LINE L1 4906 5112 -1034 23 33 0 0 chr6 26279185 26279215 -156136027 + AT_rich Low_complexity Low_complexity 1 30 0 1883 199 45 22 chr6 26279244 26279752 -156135490 + L1MB7 LINE L1 3990 4509 -1637 1566 183 62 55 chr6 26279744 26280065 -156135177 + L1MB7 LINE L1 5729 6055 -129 * 2048 141 0 0 chr6 26280065 26280356 -156134886 + AluSx SINE Alu 1 291 -21 1566 183 62 55 chr6 26280356 26280487 -156134755 + L1MB7 LINE L1 6055 6184 0 388 248 97 9 chr6 26280488 26280601 -156134641 - L2 LINE L2 -16 3297 3175 248 364 45 38 chr6 26280784 26280916 -156134326 + L3 LINE CR1 245 377 -1200 326 192 0 13 chr6 26281261 26281339 -156133903 + CT-rich Low_complexity Low_complexity 2 78 0 180 111 0 0 chr6 26282329 26282356 -156132886 + (T)n Simple_repeat Simple_repeat 1 27 0 1587 210 65 22 chr6 26282380 26282828 -156132414 - MLT1C LTR MaLR 0 467 1 2437 80 0 0 chr6 26283055 26283356 -156131886 + AluY SINE Alu 7 307 -4 2060 119 28 0 chr6 26283720 26284006 -156131236 + AluSx SINE Alu 1 294 -18 2446 113 0 0 chr6 26284043 26284354 -156130888 + AluSx SINE Alu 2 312 0 240 111 0 0 chr6 26284491 26284527 -156130715 + (TA)n Simple_repeat Simple_repeat 1 36 0 267 267 7 53 chr6 26286703 26286853 -156128389 + L3 LINE CR1 1214 1356 -221 861 157 0 22 chr6 26287293 26287427 -156127815 + FLAM_C SINE Alu 1 131 -2 239 275 50 100 chr6 26287925 26288045 -156127197 - L2 LINE L2 -3 3269 3156 1738 207 167 45 chr6 26288384 26288535 -156126707 + MLT1E2 LTR MaLR 10 141 -485 3128 110 21 42 chr6 26288535 26288911 -156126331 - MER4C LTR ERV1 0 465 100 2066 127 23 16 chr6 26288911 26289219 -156126023 - AluSq SINE Alu -3 310 1 3128 110 21 42 chr6 26289219 26289315 -156125927 - MER4C LTR ERV1 -365 100 3 1738 207 167 45 chr6 26289315 26289713 -156125529 + MLT1E2 LTR MaLR 141 626 0 372 328 62 66 chr6 26289981 26290163 -156125079 + L1MEd LINE L1 99 281 -5838 8446 110 31 55 chr6 26290163 26291496 -156123746 + HSMAR2 DNA Mariner 1 1301 -1 372 328 62 66 chr6 26291496 26291569 -156123673 + L1MEd LINE L1 281 353 -5766 430 279 92 94 chr6 26291762 26292294 -156122948 + L1MEd LINE L1 599 1131 -5179 2410 81 0 0 chr6 26292294 26292592 -156122650 + AluY SINE Alu 1 298 -13 430 279 92 94 chr6 26292592 26292618 -156122624 + L1MEd LINE L1 1131 1156 -5154 1392 138 17 77 chr6 26292618 26292915 -156122327 + L1MA9 LINE L1 6034 6312 0 430 279 92 94 chr6 26292915 26293291 -156121951 + L1MEd LINE L1 1156 1587 -4723 2323 102 3 0 chr6 26293383 26293678 -156121564 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr6 26293737 26293759 -156121483 + AT_rich Low_complexity Low_complexity 1 22 0 465 56 125 0 chr6 26293891 26293963 -156121279 - L1MA4 LINE L1 -2 6298 6218 2193 145 87 29 chr6 26294423 26294474 -156120768 - L1MB3 LINE L1 -1 6182 6135 2011 146 0 3 chr6 26294474 26294769 -156120473 - AluJb SINE Alu -18 294 1 2193 145 87 29 chr6 26294769 26295130 -156120112 - L1MB3 LINE L1 -48 6135 5746 1534 201 58 0 chr6 26295565 26295839 -156119403 + AluJb SINE Alu 1 290 -12 499 221 17 22 chr6 26295839 26296020 -156119222 + GA-rich Low_complexity Low_complexity 1 180 0 * 633 89 30 37 chr6 26295991 26296126 -156119116 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 2067 94 42 11 chr6 26296538 26296825 -156118417 - AluSx SINE Alu -16 296 1 764 99 0 0 chr6 26297145 26297246 -156117996 + L1PB4 LINE L1 6048 6148 -8 773 252 13 35 chr6 26297544 26297774 -156117468 - MIR SINE MIR 0 262 38 3241 121 68 17 chr6 26297821 26298386 -156116856 + MER6A DNA MER2_type -4 605 0 432 0 0 0 chr6 26299656 26299704 -156115538 + (CA)n Simple_repeat Simple_repeat 2 49 0 318 274 71 18 chr6 26300813 26300926 -156114316 + MIR SINE MIR 89 207 -55 2295 67 0 3 chr6 26300936 26301274 -156113968 + AluY SINE Alu 1 337 0 293 274 105 48 chr6 26301358 26301482 -156113760 + LTR65 LTR ERV1 30 160 -509 298 324 0 0 chr6 26301987 26302058 -156113184 - L2 LINE L2 -7 3265 3195 1172 176 13 35 chr6 26302248 26302475 -156112767 + AluJo SINE Alu 1 222 -90 2324 87 7 0 chr6 26302658 26302946 -156112296 - AluSx SINE Alu -22 290 1 2450 84 0 0 chr6 26303158 26303456 -156111786 - AluY SINE Alu -13 298 1 21 36 0 0 chr6 26303459 26303487 -156111755 + AT_rich Low_complexity Low_complexity 1 28 0 3348 148 17 32 chr6 26305367 26305410 -156109832 - L1MB3 LINE L1 -9 6174 6132 2048 127 17 3 chr6 26305410 26305702 -156109540 - AluSx SINE Alu -16 296 1 3348 148 17 32 chr6 26305702 26306253 -156108989 - L1MB3 LINE L1 -51 6132 5589 217 344 101 73 chr6 26307178 26307425 -156107817 + L2 LINE L2 3019 3272 0 225 333 133 0 chr6 26307657 26307762 -156107480 + L2 LINE L2 2935 3053 -219 23 33 0 0 chr6 26308054 26308084 -156107158 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 26308553 26308574 -156106668 + AT_rich Low_complexity Low_complexity 1 21 0 2141 128 10 6 chr6 26308574 26308886 -156106356 + AluSp SINE Alu 1 313 0 1845 244 105 112 chr6 26309023 26310730 -156104512 + HAL1 LINE L1 67 1762 -745 814 214 30 135 chr6 26310887 26311154 -156104088 - MER8 DNA MER2_type 0 239 1 251 206 185 22 chr6 26312010 26312102 -156103140 - MIR SINE MIR -88 174 68 344 267 62 14 chr6 26312122 26312268 -156102974 - HAL1 LINE L1 0 2507 2355 2695 149 25 51 chr6 26312662 26313171 -156102071 + LTR26B LTR ERV1 1 496 -35 948 79 0 64 chr6 26313170 26313310 -156101932 + MER4B LTR ERV1 477 607 -3 * 1093 271 73 12 chr6 26313498 26313827 -156101415 + MLT1H1 LTR MaLR 1 349 -206 288 163 397 21 chr6 26313934 26314075 -156101167 - L1MC4 LINE L1 -58 7984 7791 1955 163 6 9 chr6 26314083 26314402 -156100840 - MER7A DNA MER2_type -28 318 3 3420 208 97 16 chr6 26314490 26315337 -156099905 - L1MC4 LINE L1 -300 7742 6828 467 214 22 0 chr6 26315382 26315471 -156099771 - L1MC4a LINE L1 -1049 6759 6669 4556 166 39 44 chr6 26315633 26316607 -156098635 + LTR5 LTR ERVK 1 969 0 680 171 62 207 chr6 26316953 26317257 -156097985 - MIR SINE MIR 0 262 3 2322 132 109 5 chr6 26317292 26317678 -156097564 + MSTB LTR MaLR 1 426 0 582 194 206 15 chr6 26317934 26318080 -156097162 - MER5A DNA MER1_type 0 178 10 410 228 111 94 chr6 26318101 26318272 -156096970 + MER5B DNA MER1_type 5 178 0 252 183 33 33 chr6 26318818 26318878 -156096364 - LTR67 LTR ERVL -20 537 478 653 353 57 64 chr6 26319385 26319790 -156095452 - L2 LINE L2 -1 3271 2870 2128 111 3 13 chr6 26321716 26322023 -156093219 - AluSp SINE Alu -9 304 1 2110 118 3 10 chr6 26322032 26322336 -156092906 - AluSx SINE Alu -10 302 1 1992 164 82 68 chr6 26322336 26322857 -156092385 - MER51A LTR ERV1 -90 455 2 1956 129 3 25 chr6 26322904 26323257 -156091985 - MER4A LTR ERV1 0 664 261 517 141 33 11 chr6 26323257 26323349 -156091893 - MER4A LTR ERV1 -566 98 5 16621 96 55 35 chr6 26323361 26324769 -156090473 - MER4A-int LTR ERV1 0 6598 5221 5826 48 0 3 chr6 26324769 26325440 -156089802 + L1PA6 LINE L1 5484 6152 -2 16621 96 55 35 chr6 26325440 26326176 -156089066 - MER4A-int LTR ERV1 -1377 5221 4384 2313 90 0 7 chr6 26326176 26326477 -156088765 + AluSc SINE Alu 3 301 -8 16621 96 55 35 chr6 26326477 26327037 -156088205 - MER4A-int LTR ERV1 -2214 4384 3837 1485 126 170 115 chr6 26327036 26327184 -156088058 - MER4A-int LTR ERV1 -2917 3681 3542 * 1893 156 0 0 chr6 26327184 26327466 -156087776 - AluSx SINE Alu -20 292 11 1485 126 170 115 chr6 26327466 26327868 -156087374 - MER4A-int LTR ERV1 -3056 3542 3001 1930 148 20 0 chr6 26327868 26328171 -156087071 - AluSx SINE Alu -3 309 1 1485 126 170 115 chr6 26328171 26328212 -156087030 - MER4A-int LTR ERV1 -3597 3001 2964 2002 144 0 22 chr6 26328218 26328531 -156086711 - AluSx SINE Alu -6 306 1 10130 41 9 2 chr6 26328547 26330495 -156084747 - L1PA5 LINE L1 0 6154 4196 46603 47 23 2 chr6 26330503 26336108 -156079134 - HERV17 LTR ERV1 -2903 5723 1 6430 53 12 47 chr6 26336108 26336916 -156078326 - LTR17 LTR ERV1 0 780 1 799 41 20 0 chr6 26336916 26337014 -156078228 - HERV17 LTR ERV1 -6498 100 1 1484 142 56 34 chr6 26337016 26337075 -156078167 - MER4A LTR ERV1 0 664 608 2046 111 7 10 chr6 26337075 26337364 -156077878 + AluSx SINE Alu 5 292 -20 1484 142 56 34 chr6 26337364 26337642 -156077600 - MER4A LTR ERV1 -56 608 261 605 84 42 11 chr6 26337642 26337737 -156077505 - MER4A LTR ERV1 -566 98 1 864 223 88 28 chr6 26338429 26338561 -156076681 - MER33 DNA MER1_type -2280 305 182 1712 168 7 0 chr6 26338561 26338835 -156076407 + AluJo SINE Alu 16 291 -21 864 223 88 28 chr6 26338835 26338985 -156076257 - MER33 DNA MER1_type -2403 182 6 2732 48 0 0 chr6 26339150 26339461 -156075781 - AluY SINE Alu 0 311 1 848 204 112 41 chr6 26339502 26339698 -156075544 + MER20 DNA MER1_type 6 215 -4 710 184 0 57 chr6 26339726 26339867 -156075375 + FLAM_C SINE Alu 1 133 0 1189 108 146 5 chr6 26340141 26340353 -156074889 - MSTB LTR MaLR 0 426 185 398 157 21 36 chr6 26340359 26340499 -156074743 + CT-rich Low_complexity Low_complexity 3 140 0 1218 173 18 9 chr6 26340507 26340732 -156074510 - AluJo SINE Alu 0 312 86 777 179 179 18 chr6 26340732 26340900 -156074342 - MSTB LTR MaLR -230 196 2 1207 152 14 5 chr6 26340900 26341110 -156074132 - L1MB3 LINE L1 -56 6127 5916 230 231 0 0 chr6 26341128 26341180 -156074062 - MER103 DNA DNA -75 91 40 2247 117 0 7 chr6 26341521 26341828 -156073414 - AluSx SINE Alu -7 305 1 291 285 24 86 chr6 26342011 26342072 -156073170 + L1ME LINE L1 5672 5735 -386 2034 148 0 3 chr6 26342072 26342375 -156072867 + AluJo SINE Alu 1 302 -10 291 285 24 86 chr6 26342375 26342520 -156072722 + L1ME LINE L1 5735 5872 -249 186 170 149 0 chr6 26342549 26342596 -156072646 - L2 LINE L2 -1 3271 3218 311 238 79 63 chr6 26342686 26342875 -156072367 + L1ME LINE L1 5281 5472 -2336 700 143 0 0 chr6 26342891 26342989 -156072253 + AluSp/q SINE Alu 200 297 -16 251 184 0 0 chr6 26343109 26343158 -156072084 + L1ME LINE L1 5771 5819 -343 507 122 0 24 chr6 26343212 26343294 -156071948 + FLAM_C SINE Alu 58 137 -6 26 30 0 0 chr6 26343539 26343572 -156071670 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 26343688 26343722 -156071520 + AT_rich Low_complexity Low_complexity 1 34 0 287 49 73 0 chr6 26345044 26345085 -156070157 - L2 LINE L2 0 3313 3270 656 192 60 177 chr6 26345148 26345533 -156069709 - L2 LINE L2 -49 3264 2925 235 139 0 0 chr6 26345575 26345611 -156069631 - L2 LINE L2 -570 2744 2709 310 241 0 0 chr6 26345614 26345672 -156069570 - Tigger5 DNA MER2_type 0 2323 2266 363 284 0 35 chr6 26345767 26345883 -156069359 - L2 LINE L2 -605 2709 2598 375 280 105 20 chr6 26345954 26346154 -156069088 - L2 LINE L2 -1220 2094 1878 1508 169 0 8 chr6 26346245 26346499 -156068743 - AluJo SINE Alu -25 287 36 259 259 191 8 chr6 26346508 26346639 -156068603 - MIR SINE MIR -18 244 90 2022 117 0 0 chr6 26347542 26347816 -156067426 - AluSx SINE Alu -15 297 24 263 316 118 7 chr6 26348206 26348342 -156066900 + MIR SINE MIR 88 238 -24 2322 102 0 0 chr6 26348847 26349142 -156066100 + AluSx SINE Alu 6 300 -12 350 228 130 0 chr6 26349203 26349295 -156065947 + L2 LINE L2 2954 3057 -215 1969 120 33 0 chr6 26349600 26349907 -156065335 + AluSx SINE Alu 1 316 0 307 234 16 0 chr6 26350256 26350320 -156064922 + MIR SINE MIR 194 258 -4 237 274 33 98 chr6 26350316 26350469 -156064773 - L3 LINE CR1 -42 1535 1393 * 2352 95 0 0 chr6 26350595 26350889 -156064353 - AluSg SINE Alu -16 294 1 694 117 216 0 chr6 26352221 26352332 -156062910 + AluJo SINE Alu 2 136 -176 1822 121 15 0 chr6 26352458 26352723 -156062519 - AluSx SINE Alu -14 298 30 2529 53 0 3 chr6 26353024 26353325 -156061917 - AluY SINE Alu -11 300 1 2278 107 0 0 chr6 26354241 26354551 -156060691 - AluSx SINE Alu -2 310 1 1422 156 73 43 chr6 26355790 26355939 -156059303 - MLT1A1 LTR MaLR -55 310 167 2114 118 3 3 chr6 26355939 26356226 -156059016 - AluSx SINE Alu -25 287 1 1422 156 73 43 chr6 26356226 26356377 -156058865 - MLT1A1 LTR MaLR -198 167 1 1315 180 84 0 chr6 26356730 26356991 -156058251 - AluJo SINE Alu -29 283 1 552 189 141 68 chr6 26357129 26357335 -156057907 + L1MC4a LINE L1 6627 6847 -961 293 239 141 7 chr6 26357355 26357497 -156057745 + L1MC4 LINE L1 7044 7204 -838 912 224 188 31 chr6 26357677 26358155 -156057087 + L1MC4 LINE L1 7490 8042 0 396 231 94 16 chr6 26358224 26358407 -156056835 + MIR SINE MIR 8 256 -6 189 107 0 0 chr6 26358726 26358754 -156056488 + (T)n Simple_repeat Simple_repeat 1 28 0 278 25 0 25 chr6 26359130 26359170 -156056072 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr6 26360093 26360116 -156055126 + AT_rich Low_complexity Low_complexity 1 23 0 1773 153 20 14 chr6 26360445 26360740 -156054502 + AluJb SINE Alu 1 297 -15 253 223 108 108 chr6 26360967 26361106 -156054136 - MIR SINE MIR -55 207 69 1581 173 39 11 chr6 26361178 26361462 -156053780 - AluJo SINE Alu -16 296 5 2237 70 17 30 chr6 26361537 26361836 -156053406 + AluY SINE Alu 1 295 -16 302 263 305 8 chr6 26361845 26361963 -156053279 - MER5A DNA MER1_type 0 189 37 202 286 0 0 chr6 26362082 26362131 -156053111 - MER5B DNA MER1_type -129 49 1 1880 145 39 0 chr6 26362171 26362453 -156052789 - AluJo SINE Alu -19 293 1 640 195 26 39 chr6 26362893 26363047 -156052195 - MER3 DNA MER1_type -55 154 3 420 276 164 0 chr6 26363254 26363388 -156051854 + MIR SINE MIR 53 208 -54 2347 91 7 0 chr6 26364082 26364379 -156050863 - AluSp SINE Alu -14 299 1 1708 173 23 23 chr6 26364532 26364833 -156050409 + AluJo SINE Alu 1 301 -11 246 32 0 0 chr6 26365055 26365086 -156050156 + (CA)n Simple_repeat Simple_repeat 2 32 0 968 119 0 0 chr6 26365328 26365454 -156049788 + FLAM_C SINE Alu 1 126 -17 1752 164 18 7 chr6 26365918 26366204 -156049038 + AluSx SINE Alu 1 289 -23 2212 87 0 71 chr6 26366204 26366526 -156048716 + AluSc SINE Alu 1 299 -10 363 208 42 0 chr6 26366869 26366941 -156048301 - Tigger5 DNA MER2_type 0 2323 2249 352 254 0 0 chr6 26366946 26367017 -156048225 + Tigger5 DNA MER2_type 2249 2319 -4 410 159 0 14 chr6 26367020 26367089 -156048153 - Tigger5 DNA MER2_type -2247 76 9 1969 138 3 10 chr6 26368436 26368733 -156046509 - AluSx SINE Alu -17 295 1 2142 124 0 7 chr6 26369380 26369686 -156045556 + AluSx SINE Alu 1 304 -8 2194 107 3 3 chr6 26370538 26370838 -156044404 - AluSx SINE Alu -12 300 1 712 212 7 22 chr6 26371328 26371465 -156043777 + AluJo SINE Alu 2 136 -176 180 0 0 0 chr6 26372971 26372991 -156042251 + (A)n Simple_repeat Simple_repeat 1 20 0 210 128 0 0 chr6 26374081 26374120 -156041122 + (CGG)n Simple_repeat Simple_repeat 3 41 0 2359 88 0 0 chr6 26376124 26376429 -156038813 + AluSx SINE Alu 1 305 -7 512 145 0 0 chr6 26376456 26376525 -156038717 - AluS SINE Alu -243 70 2 4354 150 95 20 chr6 26376593 26377356 -156037886 - L1MB8 LINE L1 -5 6173 5309 2039 120 7 0 chr6 26377356 26377670 -156037572 - AluSx SINE Alu 0 316 1 4354 150 95 20 chr6 26377670 26377917 -156037325 - L1MB8 LINE L1 -869 5309 5082 2261 109 3 0 chr6 26379419 26379731 -156035511 + AluSq SINE Alu 1 313 0 218 324 0 0 chr6 26379834 26379905 -156035337 + CT-rich Low_complexity Low_complexity 2 72 0 1892 215 204 5 chr6 26380693 26381139 -156034103 - MLT1F LTR MaLR -7 535 1 837 208 120 0 chr6 26381233 26381425 -156033817 - MER58A DNA MER1_type -1 223 9 283 213 80 13 chr6 26381426 26381501 -156033741 - MLT1I LTR MaLR -14 395 316 760 230 35 40 chr6 26381558 26381758 -156033484 - MLT1I LTR MaLR -189 220 22 221 275 154 44 chr6 26382180 26382271 -156032971 - L2 LINE L2 -13 3300 3200 273 284 47 40 chr6 26382653 26382801 -156032441 + HAL1 LINE L1 5 153 -2354 2384 106 0 0 chr6 26382938 26383249 -156031993 + AluSx SINE Alu 2 312 0 286 314 52 35 chr6 26383395 26383624 -156031618 + HAL1 LINE L1 848 1080 -1427 356 270 112 10 chr6 26383661 26383857 -156031385 + HAL1 LINE L1 1146 1361 -1146 251 236 24 65 chr6 26383876 26383999 -156031243 + HAL1b LINE L1 339 456 -892 * 1353 249 43 14 chr6 26383988 26384433 -156030809 + L1ME4a LINE L1 4888 5345 -801 2598 106 11 24 chr6 26384438 26384807 -156030435 + THE1B LTR MaLR 1 364 0 11854 98 2 2 chr6 26384807 26386379 -156028863 + THE1B-int LTR MaLR 1 1571 -9 430 265 63 5 chr6 26386643 26386832 -156028410 + L1ME4a LINE L1 5717 5916 -205 1202 312 75 37 chr6 26386883 26387195 -156028047 + L1MEd LINE L1 60 359 -5760 2285 111 3 0 chr6 26387195 26387501 -156027741 + AluSx SINE Alu 5 311 -1 1202 312 75 37 chr6 26387501 26387813 -156027429 + L1MEd LINE L1 359 708 -5411 1646 170 32 14 chr6 26387825 26388107 -156027135 + AluJo SINE Alu 13 299 -13 1379 199 115 3 chr6 26388107 26388419 -156026823 + L1ME3 LINE L1 5555 5901 -263 1909 131 4 0 chr6 26388425 26388693 -156026549 + AluSx SINE Alu 39 307 -5 526 111 0 30 chr6 26388696 26388795 -156026447 + (GAAAA)n Simple_repeat Simple_repeat 5 100 0 445 218 211 0 chr6 26388830 26388972 -156026270 + L1ME3 LINE L1 5990 6161 -1 301 286 59 77 chr6 26389004 26389224 -156026018 + L1MC4 LINE L1 7826 8041 -1 387 300 9 0 chr6 26389238 26389348 -156025894 + HAL1 LINE L1 1531 1641 -866 1118 299 78 31 chr6 26389382 26389830 -156025412 + MLT1K LTR MaLR 58 526 -62 1136 216 93 31 chr6 26389893 26390217 -156025025 + MLT1C LTR MaLR 1 344 -123 377 165 0 13 chr6 26390220 26390299 -156024943 + A-rich Low_complexity Low_complexity 2 79 0 623 153 0 10 chr6 26390337 26390435 -156024807 + MLT1C LTR MaLR 371 467 0 1894 140 7 0 chr6 26390474 26390752 -156024490 + AluJo SINE Alu 21 300 -12 2079 148 0 3 chr6 26390870 26391181 -156024061 + AluSx SINE Alu 1 310 -2 261 247 14 0 chr6 26391239 26391312 -156023930 + HAL1 LINE L1 2087 2160 -347 313 312 0 51 chr6 26391372 26391510 -156023732 + HAL1b LINE L1 761 891 -457 968 183 42 124 chr6 26391737 26391762 -156023480 + L1ME3A LINE L1 5667 5692 -478 2478 82 3 0 chr6 26391762 26392067 -156023175 + AluSp SINE Alu 1 306 -7 968 183 42 124 chr6 26392067 26392397 -156022845 + L1ME3A LINE L1 5692 5993 -177 1594 257 58 54 chr6 26392410 26392932 -156022310 - MLT1G1 LTR MaLR 0 595 72 507 235 37 43 chr6 26392976 26393138 -156022104 + L1ME3A LINE L1 6010 6170 0 687 273 150 5 chr6 26393197 26393417 -156021825 + MIR SINE MIR 11 262 0 2671 127 3 3 chr6 26393478 26393840 -156021402 + THE1B LTR MaLR 3 364 0 1018 161 4 100 chr6 26394325 26394555 -156020687 + MLT1B LTR MaLR 1 208 -182 562 235 76 38 chr6 26394556 26394688 -156020554 + FLAM_A SINE Alu 1 137 -5 1163 172 0 0 chr6 26394689 26394875 -156020367 + MLT1B LTR MaLR 205 390 0 1646 180 0 46 chr6 26394967 26395272 -156019970 + AluJo SINE Alu 1 291 -21 2020 149 0 13 chr6 26395283 26395598 -156019644 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr6 26395601 26395629 -156019613 + AT_rich Low_complexity Low_complexity 1 28 0 2255 103 3 0 chr6 26395647 26395948 -156019294 + AluSx SINE Alu 11 312 0 212 363 8 0 chr6 26396190 26396314 -156018928 - L2 LINE L2 -1345 1969 1845 592 266 139 41 chr6 26397265 26397603 -156017639 - MLT1L LTR MaLR -125 490 120 980 135 0 0 chr6 26398004 26398145 -156017097 - FLAM_C SINE Alu -2 141 1 325 24 0 24 chr6 26398178 26398220 -156017022 + MADE1 DNA Mariner 1 41 -39 702 165 61 0 chr6 26398548 26398663 -156016579 + FLAM_A SINE Alu 2 123 -10 833 232 18 58 chr6 26399287 26399432 -156015810 - MER58A DNA MER1_type -2199 221 87 2082 101 0 11 chr6 26399432 26399709 -156015533 - AluSx SINE Alu -38 274 1 833 232 18 58 chr6 26399709 26399787 -156015455 - MER58A DNA MER1_type -2333 87 7 180 0 0 0 chr6 26399861 26399881 -156015361 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 224 30 30 0 chr6 26399928 26399961 -156015281 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1472 140 10 104 chr6 26399963 26400271 -156014971 - AluJo SINE Alu -33 279 1 944 193 20 5 chr6 26400756 26400958 -156014284 - L1MD3 LINE L1 0 7995 7791 1605 165 0 81 chr6 26401087 26401421 -156013821 + AluJo SINE Alu 1 307 -5 318 148 0 0 chr6 26401424 26401478 -156013764 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 2249 109 3 0 chr6 26401584 26401878 -156013364 + AluSx SINE Alu 1 295 -17 2493 79 0 0 chr6 26402278 26402581 -156012661 + AluSc SINE Alu 1 303 -6 220 350 158 8 chr6 26402901 26403267 -156011975 - L2 LINE L2 -1198 2116 1696 384 239 90 32 chr6 26403377 26403532 -156011710 + L1MC4 LINE L1 7877 8040 -2 2004 132 35 0 chr6 26403767 26404054 -156011188 + AluSx SINE Alu 1 297 -15 2134 127 58 64 chr6 26404681 26405058 -156010184 + THE1C LTR MaLR 1 375 0 566 256 21 59 chr6 26405630 26405868 -156009374 - L1MC5 LINE L1 -73 7888 7660 2429 83 0 0 chr6 26405885 26406186 -156009056 - AluY SINE Alu -10 301 1 660 252 194 92 chr6 26406512 26406709 -156008533 - LTR33 LTR ERVL -27 494 319 1717 149 10 21 chr6 26406709 26406997 -156008245 + AluJo SINE Alu 11 295 -17 660 252 194 92 chr6 26406997 26407247 -156007995 - LTR33 LTR ERVL -202 319 1 708 257 81 5 chr6 26407378 26407588 -156007654 - MIR SINE MIR -14 248 23 555 234 26 75 chr6 26407588 26407728 -156007514 + L1MC4a LINE L1 5687 5813 -1995 840 146 0 36 chr6 26407728 26407865 -156007377 + FLAM_A SINE Alu 1 132 -1 555 234 26 75 chr6 26407865 26407950 -156007292 + L1MC4a LINE L1 5813 5901 -1907 535 219 109 57 chr6 26408160 26408264 -156006978 - MIR SINE MIR 0 262 165 2439 113 73 14 chr6 26408264 26408608 -156006634 - THE1B LTR MaLR 0 364 1 535 219 109 57 chr6 26408608 26408695 -156006547 - MIR SINE MIR -97 165 61 978 322 79 49 chr6 26408960 26409606 -156005636 - L3 LINE CR1 -729 848 174 2119 122 0 3 chr6 26409606 26409894 -156005348 + AluSc SINE Alu 1 287 -22 978 322 79 49 chr6 26409894 26410007 -156005235 - L3 LINE CR1 -1403 174 66 4283 123 18 5 chr6 26410007 26410631 -156004611 - MER41B LTR ERV1 0 635 4 2327 100 0 13 chr6 26410716 26411027 -156004215 - AluSx SINE Alu -5 307 1 1658 97 0 21 chr6 26411747 26411984 -156003258 - MER4E LTR ERV1 0 766 535 1494 104 135 12 chr6 26411975 26412234 -156003008 - MER4B LTR ERV1 -319 291 1 * 631 195 148 20 chr6 26412238 26412387 -156002855 + MER45A DNA AcHobo 10 177 -1 1809 158 47 0 chr6 26412999 26413297 -156001945 + AluSx SINE Alu 1 312 0 620 228 152 16 chr6 26413342 26413526 -156001716 + MER58C DNA MER1_type 7 215 0 1259 147 72 92 chr6 26413617 26413726 -156001516 + LTR54 LTR ERV1 1 111 -399 1814 164 7 0 chr6 26413726 26414024 -156001218 + AluJb SINE Alu 1 300 -12 1259 147 72 92 chr6 26414024 26414206 -156001036 + LTR54 LTR ERV1 111 286 -224 333 0 0 0 chr6 26414208 26414245 -156000997 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1928 117 4 11 chr6 26414248 26414521 -156000721 - AluSx SINE Alu -37 275 5 420 202 53 0 chr6 26414571 26414665 -156000577 + MER57A LTR ERV1 301 399 -4 1891 131 23 107 chr6 26415039 26415562 -155999680 - MER52C LTR ERV1 -699 579 1 260 186 34 34 chr6 26415562 26415620 -155999622 + MER97c DNA MER1_type? 172 229 -861 2444 110 27 54 chr6 26415633 26416043 -155999199 + MSTB1 LTR MaLR 1 399 -33 2153 113 3 0 chr6 26416043 26416335 -155998907 - AluSx SINE Alu -19 293 1 1259 171 91 48 chr6 26416335 26416614 -155998628 + MER97b DNA MER1_type? 468 766 -287 2248 84 47 0 chr6 26416614 26416913 -155998329 + AluSp SINE Alu 1 313 0 1259 171 91 48 chr6 26416913 26416984 -155998258 + MER97b DNA MER1_type? 766 833 -220 971 145 23 41 chr6 26417015 26417187 -155998055 - FRAM SINE Alu -8 168 1 452 225 48 48 chr6 26417206 26417393 -155997849 + MER97c DNA MER1_type? 904 1090 0 321 333 167 21 chr6 26417409 26417780 -155997462 + L2 LINE L2 1548 1864 -1450 2240 114 0 0 chr6 26417780 26418078 -155997164 - AluSx SINE Alu -14 298 1 321 333 167 21 chr6 26418078 26418276 -155996966 + L2 LINE L2 1864 2200 -1114 205 383 32 11 chr6 26418262 26418356 -155996886 - MIR SINE MIR -59 149 54 * 211 257 76 132 chr6 26418461 26418605 -155996637 + L2 LINE L2 2957 3092 -180 381 250 42 42 chr6 26418793 26418913 -155996329 + L2 LINE L2 3153 3272 0 4082 157 103 26 chr6 26418927 26419690 -155995552 - LTR12 LTR ERV1 0 826 5 2788 169 15 26 chr6 26419705 26420316 -155994926 - pTR5 LTR ERV1 -1093 1345 742 198 256 26 64 chr6 26420385 26420463 -155994779 + L3 LINE CR1 1493 1567 -10 1668 140 129 0 chr6 26420995 26421259 -155993983 - AluJo SINE Alu -4 298 1 1924 127 0 14 chr6 26421518 26421801 -155993441 - AluSx SINE Alu -4 308 30 1756 139 43 0 chr6 26421911 26422210 -155993032 + AluSx SINE Alu 1 312 0 271 115 0 4 chr6 26422249 26422295 -155992947 + Alu SINE Alu 1 38 -264 1993 125 4 4 chr6 26422421 26422702 -155992540 - AluSx SINE Alu -31 281 1 2173 120 0 3 chr6 26422707 26423007 -155992235 - AluSc SINE Alu -10 299 1 1026 112 0 0 chr6 26423007 26423141 -155992101 - AluSq/x SINE Alu -177 135 2 2319 92 0 10 chr6 26423142 26423445 -155991797 - AluSq SINE Alu -13 300 1 23 0 0 0 chr6 26423445 26423468 -155991774 + AT_rich Low_complexity Low_complexity 1 23 0 1650 182 0 27 chr6 26423517 26423694 -155991548 - AluJo SINE Alu -21 291 124 240 35 0 0 chr6 26423694 26423723 -155991519 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1650 182 0 27 chr6 26423723 26423842 -155991400 - AluJo SINE Alu -188 124 3 2441 91 0 0 chr6 26423873 26424181 -155991061 + AluY SINE Alu 1 308 -3 342 0 0 0 chr6 26424214 26424252 -155990990 + (TG)n Simple_repeat Simple_repeat 1 38 0 331 50 0 0 chr6 26424252 26424292 -155990950 - AluY SINE Alu -21 279 240 901 78 20 85 chr6 26424292 26424445 -155990797 - AluY SINE Alu -139 172 30 927 259 130 63 chr6 26424445 26424710 -155990532 - L1MC4a LINE L1 -1918 5890 5591 2556 69 0 16 chr6 26424710 26425028 -155990214 + AluSq SINE Alu 1 313 0 927 259 130 63 chr6 26425028 26425140 -155990102 - L1MC4a LINE L1 -2217 5591 5488 1132 245 86 16 chr6 26425142 26425641 -155989601 - MLT1E LTR MaLR -2 591 5 819 244 22 9 chr6 26425646 26425875 -155989367 - L1MC4a LINE L1 -2317 5491 5260 239 193 83 147 chr6 26425939 26426048 -155989194 - Charlie8 DNA MER1_type -2300 117 16 2441 65 3 10 chr6 26426118 26426425 -155988817 - AluY SINE Alu -6 305 1 180 0 0 0 chr6 26426589 26426609 -155988633 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 2013 129 0 4 chr6 26426638 26426947 -155988295 - AluSx SINE Alu 0 313 6 360 249 106 104 chr6 26427023 26427051 -155988191 - L1MC5 LINE L1 -8 7953 7927 2177 105 0 10 chr6 26427051 26427345 -155987897 + AluSg SINE Alu 1 291 -19 360 249 106 104 chr6 26427345 26427465 -155987777 - L1MC5 LINE L1 -34 7927 7809 1098 196 33 9 chr6 26427465 26427679 -155987563 + MER20 DNA MER1_type 1 219 0 360 249 106 104 chr6 26427679 26428020 -155987222 - L1MC5 LINE L1 -152 7809 7462 1241 52 0 13 chr6 26428056 26428210 -155987032 + AluSg/x SINE Alu 156 307 -5 249 264 0 42 chr6 26428263 26428335 -155986907 + L2 LINE L2 3240 3308 -5 291 221 147 21 chr6 26429720 26429815 -155985427 + MER112 DNA MER1_type 148 254 -6 2037 90 0 0 chr6 26429918 26430174 -155985068 - AluSx SINE Alu -17 295 40 547 76 0 0 chr6 26430191 26430257 -155984985 - AluS SINE Alu -246 67 2 1151 186 102 3 chr6 26431277 26431562 -155983680 - L1MC4a LINE L1 -1601 4545 4233 22 23 0 45 chr6 26432018 26432034 -155983208 + AT_rich Low_complexity Low_complexity 1 16 -26 1446 168 24 28 chr6 26432034 26432325 -155982917 + AluJo SINE Alu 1 290 -22 22 23 0 45 chr6 26432325 26432352 -155982890 + AT_rich Low_complexity Low_complexity 16 42 0 31 68 0 0 chr6 26432553 26432612 -155982630 + AT_rich Low_complexity Low_complexity 1 59 0 409 214 34 43 chr6 26432616 26432733 -155982509 - L1MC5 LINE L1 -109 7852 7737 337 278 61 35 chr6 26432801 26432916 -155982326 + MIR3 SINE MIR 42 159 -49 2113 113 17 10 chr6 26434735 26435037 -155980205 + AluSx SINE Alu 2 305 -7 26 0 0 0 chr6 26435037 26435063 -155980179 + AT_rich Low_complexity Low_complexity 1 26 0 1606 191 24 14 chr6 26435621 26435915 -155979327 + AluJo SINE Alu 1 297 -15 303 185 0 0 chr6 26436252 26436306 -155978936 - MIR SINE MIR -70 138 85 2582 233 61 40 chr6 26436763 26437631 -155977611 + L1MC4 LINE L1 6699 7584 -458 21 71 0 0 chr6 26437751 26437793 -155977449 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr6 26437869 26437901 -155977341 + AT_rich Low_complexity Low_complexity 1 32 0 552 286 65 48 chr6 26438456 26438687 -155976555 + MIR SINE MIR 28 262 0 203 326 21 63 chr6 26440051 26440146 -155975096 + MER5A DNA MER1_type 74 164 -25 2257 97 10 0 chr6 26440503 26440801 -155974441 - AluSq SINE Alu -12 301 1 1591 155 34 0 chr6 26440854 26441118 -155974124 - AluJb SINE Alu -39 273 1 216 176 118 0 chr6 26441125 26441176 -155974066 + MIR SINE MIR 132 188 -74 456 213 94 0 chr6 26441231 26441358 -155973884 + MER3 DNA MER1_type 1 139 -70 598 203 174 0 chr6 26441631 26441872 -155973370 + L1ME1 LINE L1 4997 5279 -867 1884 219 97 12 chr6 26441885 26442455 -155972787 + L1ME1 LINE L1 5364 5981 -185 1850 158 3 10 chr6 26442596 26442894 -155972348 + AluSx SINE Alu 1 296 -16 2146 130 13 0 chr6 26443129 26443436 -155971806 + AluSx SINE Alu 1 311 -1 571 256 143 12 chr6 26443481 26443817 -155971425 + L1MC/D LINE L1 3712 4091 -2055 842 229 103 41 chr6 26444141 26444412 -155970830 + LTR16C LTR ERVL 196 483 -8 228 276 26 0 chr6 26444687 26444763 -155970479 + HAL1 LINE L1 2 79 -2428 573 240 45 0 chr6 26444871 26445025 -155970217 + L1MC/D LINE L1 5616 5776 -2032 296 235 15 0 chr6 26445025 26445093 -155970149 - Tigger2a DNA MER2_type 0 444 376 1332 73 11 6 chr6 26445095 26445274 -155969968 - AluSg/x SINE Alu 0 312 133 2211 125 3 3 chr6 26445317 26445629 -155969613 - AluSx SINE Alu 0 312 1 1665 137 59 7 chr6 26445658 26445929 -155969313 - AluJo SINE Alu -27 285 1 366 235 50 0 chr6 26445960 26446044 -155969198 - AluJ SINE Alu -93 209 137 1912 133 29 55 chr6 26446047 26446173 -155969069 - Tigger2a DNA MER2_type -2336 372 244 2256 78 31 3 chr6 26446173 26446466 -155968776 - AluSc SINE Alu -8 301 1 1912 133 29 55 chr6 26446466 26446721 -155968521 - Tigger2a DNA MER2_type -2464 244 1 924 269 141 11 chr6 26447192 26447584 -155967658 + HAL1 LINE L1 1597 2061 -446 2260 102 0 10 chr6 26447584 26447888 -155967354 + AluSg SINE Alu 1 301 -9 924 269 141 11 chr6 26447888 26447964 -155967278 + HAL1 LINE L1 2061 2126 -381 779 144 8 30 chr6 26447987 26448119 -155967123 - AluJ SINE Alu -183 129 1 717 223 69 64 chr6 26448122 26448468 -155966774 + HAL1 LINE L1 2155 2502 -5 682 147 0 9 chr6 26448500 26448609 -155966633 + FLAM_C SINE Alu 11 118 -25 536 200 9 19 chr6 26448658 26448763 -155966479 + FRAM SINE Alu 1 98 -78 593 188 0 18 chr6 26448764 26448876 -155966366 + LTR8 LTR ERV1 533 642 -49 456 182 0 0 chr6 26448894 26448982 -155966260 + AluJ/FRAM SINE Alu 225 312 0 22 0 0 0 chr6 26449983 26450005 -155965237 + AT_rich Low_complexity Low_complexity 1 22 0 3122 182 12 67 chr6 26450226 26450957 -155964285 - LTR8 LTR ERV1 0 691 1 1473 151 49 7 chr6 26552237 26552542 -155862700 - MER33 DNA MER1_type -1 323 6 24 32 0 0 chr6 26553051 26553082 -155862160 + AT_rich Low_complexity Low_complexity 1 31 0 2134 123 7 3 chr6 26553406 26553708 -155861534 - AluSx SINE Alu -9 303 1 233 252 56 0 chr6 26555799 26555942 -155859300 + L1ME1 LINE L1 1753 1903 -4523 300 261 45 34 chr6 26555970 26556058 -155859184 + L1ME1 LINE L1 2089 2177 -4430 232 243 29 19 chr6 26556242 26556345 -155858897 + L1ME4a LINE L1 5960 6063 -58 636 279 107 0 chr6 26556499 26556797 -155858445 - L1ME4a LINE L1 -237 5884 5555 2901 220 50 28 chr6 26557133 26558081 -155857161 + L1ME1 LINE L1 5477 6445 -1 332 319 57 0 chr6 26558081 26558222 -155857020 + L1MDa LINE L1 1912 2060 -4480 1362 184 140 4 chr6 26558230 26558480 -155856762 + AluJb SINE Alu 1 284 -18 25 31 0 0 chr6 26558577 26558609 -155856633 + AT_rich Low_complexity Low_complexity 1 32 0 10147 42 1 0 chr6 26558786 26560116 -155855126 + L1P LINE L1 2558 3888 -2258 567 175 97 0 chr6 26561451 26561565 -155853677 - FLAM_C SINE Alu -5 128 4 6588 28 6 0 chr6 26561665 26562483 -155852759 + L1PA3 LINE L1 5313 6135 -20 2082 149 39 0 chr6 26562567 26562949 -155852293 + L1PA16 LINE L1 5769 6165 -1 2116 134 0 0 chr6 26563860 26564159 -155851083 + AluSg SINE Alu 2 300 -10 246 290 140 20 chr6 26564801 26564901 -155850341 + L2 LINE L2 3151 3262 -10 807 104 0 8 chr6 26565928 26566053 -155849189 + L1MB8 LINE L1 6055 6178 0 344 246 79 0 chr6 26566057 26566183 -155849059 - L1ME4a LINE L1 0 6121 5986 1424 261 108 38 chr6 26566705 26567261 -155847981 + MLT1G1 LTR MaLR 1 595 0 204 250 0 0 chr6 26567329 26567369 -155847873 - MIR SINE MIR -113 149 110 1007 167 11 6 chr6 26568780 26568954 -155846288 - AluJo SINE Alu -137 175 1 2374 197 72 35 chr6 26568960 26569075 -155846167 - L1MB7 LINE L1 -77 6107 5998 432 55 0 0 chr6 26569075 26569130 -155846112 + (CA)n Simple_repeat Simple_repeat 2 56 0 2374 197 72 35 chr6 26569130 26569664 -155845578 - L1MB7 LINE L1 -186 5998 5434 1385 185 26 0 chr6 26569860 26570092 -155845150 - AluJb SINE Alu -11 301 64 267 269 156 27 chr6 26570190 26570447 -155844795 + L1M4 LINE L1 4713 5002 -1144 912 246 24 40 chr6 26571796 26572093 -155843149 + LTR40a LTR ERVL 226 517 -2 625 262 18 36 chr6 26572324 26572492 -155842750 + MER5A DNA MER1_type 1 165 -24 2099 101 7 36 chr6 26572961 26573269 -155841973 + AluSx SINE Alu 5 303 -9 184 192 0 0 chr6 26576943 26576969 -155838273 + A-rich Low_complexity Low_complexity 1 26 0 2808 184 32 15 chr6 26577292 26577830 -155837412 + L1MB8 LINE L1 4747 5312 -872 3342 151 13 2 chr6 26577830 26578374 -155836868 + MER44D DNA MER2_type 1 605 0 2808 184 32 15 chr6 26578374 26578821 -155836421 + L1MB8 LINE L1 5312 5750 -434 2202 160 81 35 chr6 26578822 26579315 -155835927 - MER39 LTR ERV1 0 707 192 677 206 48 5 chr6 26579330 26579539 -155835703 + L1MB8 LINE L1 5748 5965 -213 302 222 37 12 chr6 26579651 26579732 -155835510 + L2 LINE L2 2670 2752 -562 284 254 0 111 chr6 26579913 26580039 -155835203 + MLT1H LTR MaLR 233 344 -205 572 152 0 0 chr6 26580072 26580171 -155835071 + MLT1H LTR MaLR 451 549 0 928 260 165 13 chr6 26580174 26580617 -155834625 + L2 LINE L2 2754 3271 -42 26 0 0 0 chr6 26581035 26581061 -155834181 + AT_rich Low_complexity Low_complexity 1 26 0 256 197 56 14 chr6 26581574 26581645 -155833597 + HAL1 LINE L1 1584 1657 -850 194 213 115 16 chr6 26581713 26581774 -155833468 - L3 LINE CR1 -109 1468 1402 230 256 67 78 chr6 26582606 26582696 -155832546 + L2 LINE L2 3209 3297 -16 221 224 82 0 chr6 26582652 26582701 -155832541 + MIR SINE MIR 205 257 -5 * 370 323 60 23 chr6 26583486 26583619 -155831623 - L2 LINE L2 -14 3258 3121 542 276 53 109 chr6 26583649 26583813 -155831429 + L2 LINE L2 1538 1710 -1604 2114 116 0 7 chr6 26583813 26584125 -155831117 + AluSc SINE Alu 1 310 0 542 276 53 109 chr6 26584125 26584339 -155830903 + L2 LINE L2 1710 1881 -1433 1996 119 7 4 chr6 26584339 26584616 -155830626 + AluSx SINE Alu 5 282 -30 542 276 53 109 chr6 26584616 26584767 -155830475 + L2 LINE L2 1881 2039 -1275 706 332 41 56 chr6 26584817 26585481 -155829761 + L2 LINE L2 2573 3226 -46 382 225 17 152 chr6 26586004 26586182 -155829060 - MIR3 SINE MIR -9 199 46 2241 117 7 0 chr6 26586182 26586490 -155828752 + AluSg SINE Alu 1 310 0 227 200 0 0 chr6 26586931 26586981 -155828261 + (TA)n Simple_repeat Simple_repeat 2 51 0 1183 137 52 21 chr6 26587062 26587295 -155827947 + MER21A LTR ERV1 25 264 -667 2894 155 59 21 chr6 26587302 26587830 -155827412 + MER21A LTR ERV1 378 925 -6 365 164 14 0 chr6 26587837 26587910 -155827332 + L1MB4 LINE L1 6107 6180 0 954 189 18 39 chr6 26587980 26588350 -155826892 + L1MDa LINE L1 2380 2740 -3800 347 256 157 65 chr6 26588638 26588735 -155826507 + L1MC/D LINE L1 5492 5579 -572 1514 170 56 36 chr6 26588735 26589094 -155826148 - MER47A DNA MER2_type 0 366 1 347 256 157 65 chr6 26589094 26589320 -155825922 + L1MC/D LINE L1 5579 5847 -304 1166 228 11 11 chr6 26589452 26589728 -155825514 + MER93b LTR ERV1 98 373 0 1244 207 66 88 chr6 26590611 26591079 -155824163 - MLT1C LTR MaLR -3 464 7 2571 58 0 3 chr6 26591578 26591890 -155823352 + AluY SINE Alu 1 311 0 341 361 65 19 chr6 26592382 26592645 -155822597 + L1MEd LINE L1 487 761 -5358 1807 184 3 3 chr6 26593608 26593902 -155821340 + AluJo SINE Alu 1 294 -18 16155 122 23 16 chr6 26594432 26597924 -155817318 - L1P3 LINE L1 -2534 3927 377 773 164 0 38 chr6 26598092 26598275 -155816967 + L1M4 LINE L1 5266 5441 -737 1398 262 61 17 chr6 26598307 26598780 -155816462 + L1MEc LINE L1 37 530 -5866 368 238 12 12 chr6 26599577 26599657 -155815585 - L2 LINE L2 -4 3309 3230 258 299 143 0 chr6 26600079 26600226 -155815016 - MIR SINE MIR -10 252 85 263 264 14 0 chr6 26600318 26600390 -155814852 + GA-rich Low_complexity Low_complexity 1 73 0 382 282 122 6 chr6 26600407 26600563 -155814679 + MIR SINE MIR 65 238 -24 2132 137 0 3 chr6 26600694 26600987 -155814255 - AluSp SINE Alu -16 297 6 396 296 37 0 chr6 26601008 26601116 -155814126 + L2 LINE L2 3199 3310 -3 347 113 0 0 chr6 26601543 26601596 -155813646 + Alu SINE Alu 242 294 -8 1189 221 62 78 chr6 26601713 26602068 -155813174 - L1MC5 LINE L1 -722 7239 6895 4424 145 32 25 chr6 26602068 26602413 -155812829 - L1MA8 LINE L1 -4 6287 5946 1239 180 38 112 chr6 26602413 26602807 -155812435 + MLT1A1 LTR MaLR 1 365 0 4424 145 32 25 chr6 26602807 26603300 -155811942 - L1MA8 LINE L1 -345 5946 5443 1189 221 62 78 chr6 26603300 26603511 -155811731 - L1MC5 LINE L1 -1066 6895 6682 568 135 4 18 chr6 26603524 26603776 -155811466 + AluSx SINE Alu 1 303 -7 206 339 0 0 chr6 26603945 26604007 -155811235 + L2 LINE L2 3205 3266 -6 266 340 33 7 chr6 26604027 26604180 -155811062 + MARNA DNA Mariner 400 556 -30 415 162 14 0 chr6 26604215 26604289 -155810953 + HY5 scRNA scRNA 1 75 -9 237 65 0 0 chr6 26605295 26605326 -155809916 + (A)n Simple_repeat Simple_repeat 1 31 0 23 54 0 0 chr6 26605435 26605472 -155809770 + AT_rich Low_complexity Low_complexity 1 37 0 581 220 84 57 chr6 26605693 26606061 -155809181 - L1MC5 LINE L1 -44 7917 7540 1685 162 45 3 chr6 26606134 26606424 -155808818 - AluSx SINE Alu -6 306 5 843 86 0 0 chr6 26606430 26606546 -155808696 - L1PB1 LINE L1 -4 6147 6032 308 328 15 0 chr6 26606774 26606908 -155808334 + L1MC/D LINE L1 5690 5825 -1983 349 252 222 0 chr6 26607346 26607506 -155807736 - MIR SINE MIR -16 246 42 1302 133 35 35 chr6 26607542 26607768 -155807474 + MER30 DNA MER1_type 5 230 0 2137 216 76 37 chr6 26607874 26608415 -155806827 - MER68 LTR ERV1 0 562 1 2527 156 14 16 chr6 26609654 26610078 -155805164 + MSTB LTR MaLR 1 423 -3 341 266 29 40 chr6 26610536 26610709 -155804533 + L1MC5 LINE L1 7701 7871 -90 757 305 147 14 chr6 26610832 26611321 -155803921 + LTR67 LTR ERVL 4 557 0 1980 223 26 28 chr6 26611721 26612227 -155803015 + MLT1D LTR MaLR 1 505 0 217 326 78 7 chr6 26612431 26612572 -155802670 + MIR SINE MIR 61 211 -51 25 0 0 0 chr6 26612586 26612611 -155802631 + AT_rich Low_complexity Low_complexity 1 25 0 344 298 254 10 chr6 26612741 26612946 -155802296 + MIR SINE MIR 8 262 0 187 305 29 48 chr6 26612992 26613097 -155802145 - MIR SINE MIR -47 215 113 1625 169 23 29 chr6 26613097 26613405 -155801837 + AluSx SINE Alu 1 306 -6 1775 161 0 0 chr6 26613655 26613947 -155801295 + AluJb SINE Alu 17 308 0 2264 90 3 34 chr6 26613948 26614270 -155800972 + AluSx SINE Alu 1 312 0 249 330 0 19 chr6 26614753 26614859 -155800383 + CT-rich Low_complexity Low_complexity 2 105 0 320 199 133 80 chr6 26614995 26615014 -155800228 + L1ME4a LINE L1 5748 5765 -356 1892 150 0 7 chr6 26615014 26615300 -155799942 + AluJo SINE Alu 1 284 -28 320 199 133 80 chr6 26615300 26615431 -155799811 + L1ME4a LINE L1 5765 5906 -215 3446 239 43 28 chr6 26615622 26617426 -155797816 + L1MB2 LINE L1 3722 5672 -492 2037 198 160 9 chr6 26617401 26618052 -155797190 + L1M4c LINE L1 1086 1834 -4550 * 323 212 148 3 chr6 26618052 26618151 -155797091 + FLAM_A SINE Alu 19 107 -26 237 65 0 0 chr6 26618190 26618221 -155797021 + (CA)n Simple_repeat Simple_repeat 2 32 0 216 24 73 0 chr6 26618232 26618273 -155796969 + (TA)n Simple_repeat Simple_repeat 1 44 0 251 43 100 0 chr6 26618374 26618444 -155796798 + (TA)n Simple_repeat Simple_repeat 1 77 0 27589 116 20 17 chr6 26618741 26625149 -155790093 + L1PA8 LINE L1 10 6483 -4 1445 221 43 5 chr6 26625182 26625621 -155789621 + L1M4c LINE L1 1924 2379 -4005 915 197 126 45 chr6 26625624 26625893 -155789349 + L1MB2 LINE L1 6075 6365 -42 1842 139 3 17 chr6 26626729 26627030 -155788212 - AluJb SINE Alu -15 297 1 235 143 0 41 chr6 26627099 26627148 -155788094 + MLT1L LTR MaLR 150 196 -419 2075 92 34 7 chr6 26627492 26627787 -155787455 + AluY SINE Alu 1 303 -8 1723 133 27 23 chr6 26627896 26628196 -155787046 - AluSx SINE Alu -6 306 6 324 363 18 0 chr6 26628696 26628809 -155786433 - L1M4 LINE L1 -1980 4166 4052 2304 104 3 0 chr6 26628899 26629197 -155786045 + AluSq SINE Alu 1 299 -14 950 232 98 4 chr6 26629230 26629484 -155785758 + ERVL LTR ERVL 4158 4435 -1329 626 258 82 65 chr6 26629542 26630108 -155785134 + ERVL LTR ERVL 4533 5178 -586 1103 96 0 0 chr6 26631045 26631191 -155784051 + AluSp/q SINE Alu 160 305 -8 457 0 68 0 chr6 26631454 26631527 -155783715 + (CAAA)n Simple_repeat Simple_repeat 2 79 0 22 56 0 0 chr6 26631842 26631878 -155783364 + AT_rich Low_complexity Low_complexity 1 36 0 52 50 0 0 chr6 26633309 26633389 -155781853 + AT_rich Low_complexity Low_complexity 1 80 0 1736 184 3 3 chr6 26637590 26637873 -155777369 + AluJb SINE Alu 1 283 -29 720 215 72 15 chr6 26638528 26638723 -155776519 - MER3 DNA MER1_type -3 206 1 462 88 0 0 chr6 26638727 26638795 -155776447 + (CA)n Simple_repeat Simple_repeat 2 69 0 325 277 95 20 chr6 26639220 26639368 -155775874 + MIR SINE MIR 92 250 -12 2428 131 75 26 chr6 26639586 26640053 -155775189 + L1MB2 LINE L1 5675 6164 -7 238 188 0 0 chr6 26640217 26640265 -155774977 - MER96B DNA MER1_type? -180 237 190 343 196 0 103 chr6 26640289 26640386 -155774856 - L1MC4 LINE L1 -1339 6703 6617 601 206 73 6 chr6 26640719 26640884 -155774358 - MER96B DNA MER1_type? -241 176 1 1114 268 40 39 chr6 26641013 26641428 -155773814 + MLT1A1 LTR MaLR 1 365 0 356 287 132 8 chr6 26643178 26643307 -155771935 + MER5A DNA MER1_type 37 181 -8 21 0 0 0 chr6 26643927 26643948 -155771294 + AT_rich Low_complexity Low_complexity 1 21 0 1830 135 0 34 chr6 26643951 26644248 -155770994 + AluSx SINE Alu 1 287 -25 656 210 30 42 chr6 26644249 26644416 -155770826 + L1MD3 LINE L1 7828 7992 -3 1081 159 30 86 chr6 26645484 26645716 -155769526 + MER20 DNA MER1_type 1 219 0 197 326 65 11 chr6 26645942 26646034 -155769208 + MIR3 SINE MIR 91 187 -21 855 149 22 15 chr6 26646062 26646196 -155769046 - AluJb SINE Alu -177 135 1 437 104 104 0 chr6 26646234 26646301 -155768941 + LTR32 LTR ERVL 15 88 -383 1169 155 29 75 chr6 26646322 26646561 -155768681 + LTR32 LTR ERVL 234 461 -10 1235 183 58 4 chr6 26647235 26647492 -155767750 + MER33 DNA MER1_type 8 278 -46 2720 184 68 19 chr6 26647599 26648170 -155767072 - L1MC4 LINE L1 -766 7276 6678 1781 126 92 43 chr6 26648170 26648330 -155766912 + MER2 DNA MER2_type 4 155 -190 2390 146 45 42 chr6 26648330 26648755 -155766487 + MSTA LTR MaLR 1 426 -2 1781 126 92 43 chr6 26648755 26648920 -155766322 + MER2 DNA MER2_type 155 345 0 957 181 63 19 chr6 26648920 26649125 -155766117 - L1MC4 LINE L1 -1364 6678 6465 760 257 101 93 chr6 26650219 26650616 -155764626 - L1ME4a LINE L1 -1 6120 5717 1655 162 55 17 chr6 26650616 26650906 -155764336 - AluJb SINE Alu -11 301 1 760 257 101 93 chr6 26650906 26651014 -155764228 - L1ME4a LINE L1 -404 5717 5611 221 333 0 17 chr6 26651515 26651575 -155763667 + L3b LINE CR1 1515 1573 -10 1770 181 13 0 chr6 26651824 26652122 -155763120 - AluSx SINE Alu -5 307 6 234 0 0 0 chr6 26652442 26652468 -155762774 + (TG)n Simple_repeat Simple_repeat 1 26 0 235 344 99 21 chr6 26652671 26652863 -155762379 + MLT1K LTR MaLR 189 395 -193 1918 176 0 6 chr6 26652906 26653218 -155762024 + AluSx SINE Alu 2 311 -1 1971 138 0 0 chr6 26653227 26653502 -155761740 + AluSx SINE Alu 1 275 -37 192 40 0 0 chr6 26653506 26653531 -155761711 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 253 264 0 14 chr6 26653581 26653653 -155761589 + MLT1K LTR MaLR 501 571 -17 1774 204 31 22 chr6 26653816 26654268 -155760974 - L1M4b LINE L1 -3549 2531 2076 1763 177 0 0 chr6 26654273 26654585 -155760657 + AluJb SINE Alu 1 312 0 522 336 41 31 chr6 26654865 26655183 -155760059 + MER68 LTR ERV1 242 562 0 2180 129 0 19 chr6 26655211 26655528 -155759714 - AluSx SINE Alu -1 311 1 920 272 47 66 chr6 26655611 26656084 -155759158 - L1M4b LINE L1 -5176 894 471 2718 26 0 3 chr6 26656084 26656394 -155758848 - AluY SINE Alu -2 309 1 920 272 47 66 chr6 26656394 26656737 -155758505 - L1M4b LINE L1 -5599 471 123 390 256 112 37 chr6 26656790 26657185 -155758057 - L1MCc LINE L1 -4958 1465 1176 342 242 76 38 chr6 26657704 26657861 -155757381 - L1MCc LINE L1 -6236 187 25 1983 123 56 0 chr6 26657899 26658184 -155757058 + AluSx SINE Alu 1 301 -11 1522 185 75 4 chr6 26658204 26658485 -155756757 + AluJb SINE Alu 1 301 -11 249 269 214 55 chr6 26658553 26658698 -155756544 + MIR SINE MIR 75 242 -20 324 318 34 27 chr6 26658700 26658848 -155756394 - L2 LINE L2 -1 3312 3164 293 284 88 34 chr6 26659015 26659163 -155756079 + MLT1J LTR MaLR 1 156 -355 215 194 32 0 chr6 26659216 26659278 -155755964 + (TA)n Simple_repeat Simple_repeat 1 64 0 420 20 0 0 chr6 26659303 26659352 -155755890 + (CA)n Simple_repeat Simple_repeat 2 50 0 438 271 16 80 chr6 26659440 26659628 -155755614 + MLT1J LTR MaLR 328 503 -8 330 236 172 17 chr6 26659628 26659802 -155755440 + L1ME LINE L1 5270 5470 -889 1746 154 54 7 chr6 26661009 26661288 -155753954 + AluJb SINE Alu 1 292 -20 28 99 0 0 chr6 26661390 26661481 -155753761 + AT_rich Low_complexity Low_complexity 1 91 0 527 221 131 14 chr6 26662085 26662115 -155753127 + MER5B DNA MER1_type 17 42 -136 2018 75 0 8 chr6 26662115 26662367 -155752875 - AluSc SINE Alu -14 295 46 527 221 131 14 chr6 26662367 26662481 -155752761 + MER5B DNA MER1_type 42 178 0 22 0 0 0 chr6 26662674 26662696 -155752546 + AT_rich Low_complexity Low_complexity 1 22 0 726 206 0 8 chr6 26662696 26662822 -155752420 - FLAM_C SINE Alu -17 126 2 249 333 56 0 chr6 26663026 26663134 -155752108 - MIR SINE MIR -74 188 75 1795 182 0 10 chr6 26663802 26664110 -155751132 - AluJb SINE Alu -7 305 1 1103 145 70 35 chr6 26664194 26664394 -155750848 + AluJo SINE Alu 83 289 -23 544 306 57 26 chr6 26664657 26664886 -155750356 + MIR SINE MIR 21 256 -6 26 0 0 0 chr6 26665784 26665810 -155749432 + AT_rich Low_complexity Low_complexity 1 26 0 579 119 0 36 chr6 26666249 26666333 -155748909 + AluJ/FLAM SINE Alu 2 82 -230 2124 120 13 3 chr6 26666401 26666701 -155748541 + AluSx SINE Alu 1 303 -9 473 331 137 7 chr6 26666705 26666989 -155748253 + L1ME LINE L1 5484 5804 -317 1937 142 0 0 chr6 26667011 26667286 -155747956 + AluSx SINE Alu 22 296 -16 282 374 82 0 chr6 26667559 26667730 -155747512 - L3b LINE CR1 -126 1457 1273 1854 183 0 3 chr6 26668027 26668339 -155746903 + AluJo SINE Alu 1 311 -1 2254 112 0 0 chr6 26668357 26668651 -155746591 + AluSx SINE Alu 1 294 -18 240 239 15 60 chr6 26669015 26669082 -155746160 + MIR SINE MIR 38 101 -107 34 42 0 0 chr6 26669972 26670020 -155745222 + AT_rich Low_complexity Low_complexity 1 48 0 35 63 0 0 chr6 26670664 26670727 -155744515 + AT_rich Low_complexity Low_complexity 1 63 0 357 24 0 0 chr6 26671429 26671471 -155743771 + (TTG)n Simple_repeat Simple_repeat 1 42 0 1977 106 0 63 chr6 26671471 26671772 -155743470 + AluSx SINE Alu 6 287 -25 378 282 120 7 chr6 26671791 26671933 -155743309 - MIR SINE MIR -2 260 103 611 146 31 0 chr6 26671940 26672036 -155743206 + FRAM SINE Alu 55 153 -23 186 239 0 22 chr6 26672509 26672555 -155742687 + MIR SINE MIR 107 151 -111 391 298 86 71 chr6 26672680 26672847 -155742395 + L1MEc LINE L1 511 674 -5722 743 202 16 0 chr6 26672847 26672976 -155742266 + FLAM_A SINE Alu 1 131 -2 391 298 86 71 chr6 26672976 26673147 -155742095 + L1MEc LINE L1 674 854 -5542 24 0 0 0 chr6 26673715 26673739 -155741503 + AT_rich Low_complexity Low_complexity 1 24 0 2438 84 0 0 chr6 26673739 26674050 -155741192 + AluY SINE Alu 1 311 0 370 0 40 0 chr6 26674074 26674124 -155741118 + (TG)n Simple_repeat Simple_repeat 1 52 0 2732 77 61 56 chr6 26674483 26674927 -155740315 + L1MA5A LINE L1 5846 6291 -6 24 53 0 0 chr6 26674929 26674967 -155740275 + AT_rich Low_complexity Low_complexity 1 38 0 1563 82 134 0 chr6 26674970 26675201 -155740041 + AluY SINE Alu 1 262 -49 963 106 0 0 chr6 26675203 26675345 -155739897 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 2083 133 0 10 chr6 26675349 26675651 -155739591 + AluSg SINE Alu 2 300 -10 193 79 184 0 chr6 26675819 26675857 -155739385 + MIR SINE MIR 212 256 -6 272 228 165 25 chr6 26675968 26676047 -155739195 + MIR SINE MIR 56 123 -85 1352 216 34 60 chr6 26676155 26676539 -155738703 + MLT1B LTR MaLR 6 379 -11 1090 24 16 0 chr6 26676598 26676725 -155738517 - AluY SINE Alu -1 310 182 198 103 0 0 chr6 26676748 26676777 -155738465 + (A)n Simple_repeat Simple_repeat 1 29 0 2169 99 21 0 chr6 26677077 26677361 -155737881 + AluSq SINE Alu 7 296 -17 1194 71 0 22 chr6 26677370 26677552 -155737690 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 285 246 66 0 chr6 26677639 26677700 -155737542 - L2 LINE L2 0 3313 3249 479 293 52 11 chr6 26677920 26678094 -155737148 + MIR SINE MIR 82 262 0 1382 217 82 85 chr6 26679557 26679664 -155735578 + MLT1E3 LTR MaLR 61 167 -459 1115 105 52 0 chr6 26679664 26679849 -155735393 + L1PA8 LINE L1 5994 6186 0 297 0 0 0 chr6 26679848 26679881 -155735361 + (GA)n Simple_repeat Simple_repeat 2 34 0 1382 217 82 85 chr6 26679849 26679883 -155735359 + MLT1E3 LTR MaLR 167 200 -426 1998 136 3 23 chr6 26679883 26680193 -155735049 + AluJb SINE Alu 1 304 -8 186 43 0 0 chr6 26680193 26680216 -155735026 + (GA)n Simple_repeat Simple_repeat 2 24 0 1382 217 82 85 chr6 26680216 26680514 -155734728 + MLT1E3 LTR MaLR 198 452 -174 535 189 0 9 chr6 26680633 26680739 -155734503 - L1ME1 LINE L1 -261 5905 5801 988 211 0 0 chr6 26680750 26680921 -155734321 - AluJb SINE Alu -5 307 137 2501 67 0 0 chr6 26680924 26681224 -155734018 - AluY SINE Alu -11 300 1 1279 231 16 37 chr6 26681227 26681604 -155733638 - L1M4 LINE L1 -1902 4244 3876 1092 251 31 25 chr6 26681601 26682048 -155733194 - L1M4 LINE L1 -2629 3517 3068 * 978 291 71 42 chr6 26682037 26682584 -155732658 - L1MEc LINE L1 -5795 601 39 * 1505 282 81 36 chr6 26682600 26683431 -155731811 - HAL1 LINE L1 -1542 965 98 2276 97 0 23 chr6 26683431 26683739 -155731503 - AluSg1 SINE Alu -8 301 1 200 360 0 0 chr6 26684316 26684402 -155730840 + (CCA)n Simple_repeat Simple_repeat 2 87 0 242 379 0 16 chr6 26684421 26684603 -155730639 + (CCA)n Simple_repeat Simple_repeat 2 180 0 1666 172 41 0 chr6 26684670 26684960 -155730282 + AluJo SINE Alu 1 302 -10 1918 149 0 19 chr6 26685063 26685371 -155729871 - AluJb SINE Alu -10 302 1 912 173 78 31 chr6 26685768 26685959 -155729283 - L1MC2 LINE L1 -16 6328 6129 216 372 59 30 chr6 26686057 26686396 -155728846 + L2 LINE L2 1732 2080 -1234 279 0 0 0 chr6 26686410 26686441 -155728801 + (TC)n Simple_repeat Simple_repeat 2 32 0 845 230 5 58 chr6 26686445 26686636 -155728606 + MLT1F LTR MaLR 6 186 -356 211 265 0 0 chr6 26686690 26686739 -155728503 + L2 LINE L2 3261 3309 -4 2086 107 0 24 chr6 26687072 26687384 -155727858 + AluSx SINE Alu 1 305 0 234 263 84 31 chr6 26687405 26687522 -155727720 + MIR SINE MIR 33 139 -69 470 244 48 77 chr6 26687902 26688111 -155727131 - L1MC5 LINE L1 -32 7929 7727 729 174 0 41 chr6 26688694 26688815 -155726427 - FLAM_C SINE Alu -26 117 2 207 311 131 0 chr6 26689844 26689966 -155725276 - L2 LINE L2 -6 3307 3170 276 154 0 0 chr6 26691200 26691252 -155723990 + GA-rich Low_complexity Low_complexity 2 53 0 23 0 0 0 chr6 26691455 26691478 -155723764 + GC_rich Low_complexity Low_complexity 1 23 0 312 27 0 0 chr6 26693095 26693132 -155722110 + (CA)n Simple_repeat Simple_repeat 1 37 0 2463 82 0 0 chr6 26693791 26694097 -155721145 + AluSp SINE Alu 1 306 -7 265 211 276 0 chr6 26694619 26694695 -155720547 - Charlie7 DNA MER1_type -2515 97 1 294 288 234 49 chr6 26694710 26694936 -155720306 + L2 LINE L2 3005 3272 0 1999 137 0 17 chr6 26695676 26695976 -155719266 - AluSx SINE Alu -17 295 1 186 341 47 54 chr6 26696217 26696346 -155718896 + L2 LINE L2 3139 3266 -6 2190 116 7 3 chr6 26696386 26696688 -155718554 + AluSx SINE Alu 1 303 -9 1918 149 0 3 chr6 26697843 26698131 -155717111 - AluJo SINE Alu -25 287 1 724 130 0 0 chr6 26699392 26699492 -155715750 - HY3 scRNA scRNA -1 100 1 858 263 21 29 chr6 26699498 26699741 -155715501 - MIR SINE MIR -1 261 21 724 304 103 59 chr6 26699867 26700275 -155714967 - L2 LINE L2 -17 3255 2830 201 307 40 30 chr6 26700478 26700579 -155714663 + MIR SINE MIR 149 250 -12 565 215 74 13 chr6 26700832 26700981 -155714261 + MER103 DNA DNA 2 159 -7 3771 166 67 15 chr6 26701339 26702059 -155713183 - L1MD1 LINE L1 0 6242 5482 1771 146 11 8 chr6 26702059 26702327 -155712915 - AluJb SINE Alu -17 295 27 3771 166 67 15 chr6 26702327 26702341 -155712901 - L1MD1 LINE L1 -760 5482 5470 1287 131 49 134 chr6 26702764 26703070 -155712172 - AluJo SINE Alu -32 280 1 360 0 0 0 chr6 26705224 26705264 -155709978 + (TG)n Simple_repeat Simple_repeat 2 41 0 1474 194 25 0 chr6 26705344 26705623 -155709619 - AluJo SINE Alu -12 300 15 333 93 107 0 chr6 26705627 26705702 -155709540 + CT-rich Low_complexity Low_complexity 4 86 0 1700 178 14 0 chr6 26705704 26705980 -155709262 - AluJb SINE Alu -32 280 1 773 336 121 12 chr6 26706356 26706779 -155708463 - L3 LINE CR1 -11 1566 1098 21 36 0 0 chr6 26707172 26707200 -155708042 + AT_rich Low_complexity Low_complexity 1 28 0 379 206 213 62 chr6 26707276 26707436 -155707806 - L1ME LINE L1 -314 5807 5624 386 0 0 39 chr6 26708842 26708893 -155706349 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 279 0 0 0 chr6 26708894 26708925 -155706317 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 640 207 8 16 chr6 26708929 26709050 -155706192 - FLAM_A SINE Alu -13 120 1 796 271 9 9 chr6 26709931 26710149 -155705093 + MIR SINE MIR 45 262 0 21 0 0 0 chr6 26710228 26710249 -155704993 + AT_rich Low_complexity Low_complexity 1 21 0 2297 88 10 0 chr6 26710714 26711010 -155704232 - AluSp SINE Alu -14 299 1 2310 105 0 3 chr6 26711126 26711430 -155703812 - AluSx SINE Alu -9 303 1 962 197 22 75 chr6 26711488 26711652 -155703590 - MER20 DNA MER1_type -3 216 66 2322 92 0 10 chr6 26711652 26711955 -155703287 + AluSx SINE Alu 1 300 -12 962 197 22 75 chr6 26711955 26712018 -155703224 - MER20 DNA MER1_type -153 66 1 960 178 15 61 chr6 26712267 26712343 -155702899 + MER5A DNA MER1_type 1 79 -110 1732 165 62 0 chr6 26712343 26712634 -155702608 + AluSx SINE Alu 1 309 -3 960 178 15 61 chr6 26712634 26712754 -155702488 + MER5A DNA MER1_type 79 188 -1 204 229 21 0 chr6 26713618 26713666 -155701576 + MER5B DNA MER1_type 1 49 -129 24 0 0 0 chr6 26715200 26715224 -155700018 + AT_rich Low_complexity Low_complexity 1 24 0 369 282 69 95 chr6 26716065 26716327 -155698915 + L3 LINE CR1 1244 1498 -79 2451 127 3 9 chr6 26716327 26716666 -155698576 - MER1B DNA MER1_type 0 337 1 2335 174 46 60 chr6 26717884 26718183 -155697059 - L1MB4 LINE L1 -6 6174 5885 2151 159 0 26 chr6 26718183 26718528 -155696714 + MER1B DNA MER1_type 2 337 0 2335 174 46 60 chr6 26718528 26718813 -155696429 - L1MB4 LINE L1 -295 5885 5598 2217 93 10 7 chr6 26718838 26719139 -155696103 - AluSq SINE Alu -11 302 1 2304 96 3 3 chr6 26720336 26720638 -155694604 - AluSg SINE Alu -8 302 1 269 291 109 18 chr6 26720869 26720979 -155694263 - L2 LINE L2 -4 3268 3149 892 125 29 29 chr6 26721010 26721146 -155694096 - AluJo SINE Alu -176 136 1 877 164 105 0 chr6 26721183 26721335 -155693907 + AluSg/x SINE Alu 137 304 -8 2415 169 18 39 chr6 26721336 26721725 -155693517 - L1MB7 LINE L1 -28 6156 5779 2222 116 0 0 chr6 26721725 26722026 -155693216 - AluSg SINE Alu -9 301 1 2415 169 18 39 chr6 26722026 26722151 -155693091 - L1MB7 LINE L1 -405 5779 5653 226 356 10 29 chr6 26722219 26722323 -155692919 - L2 LINE L2 -176 3096 2995 963 249 33 4 chr6 26722330 26722575 -155692667 - MER112 DNA MER1_type -4 252 1 185 306 65 0 chr6 26722729 26722791 -155692451 - L2 LINE L2 0 3313 3248 1877 112 0 8 chr6 26722898 26723166 -155692076 + AluSx SINE Alu 42 307 -5 502 276 53 88 chr6 26723168 26723600 -155691642 + HAL1 LINE L1 16 432 -2075 234 0 0 0 chr6 26724864 26724890 -155690352 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr6 26725088 26725117 -155690125 + AT_rich Low_complexity Low_complexity 1 29 0 2242 75 0 0 chr6 26726178 26726445 -155688797 + AluSg SINE Alu 28 294 -16 264 243 0 0 chr6 26726476 26726550 -155688692 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 497 274 128 5 chr6 26726954 26727149 -155688093 - MIR SINE MIR -1 261 45 405 214 165 0 chr6 26727783 26727940 -155687302 + MER5A DNA MER1_type 4 189 0 2156 98 35 0 chr6 26728382 26728668 -155686574 - AluSx SINE Alu -16 296 1 21 0 0 0 chr6 26728668 26728689 -155686553 + AT_rich Low_complexity Low_complexity 1 21 0 621 168 47 0 chr6 26728689 26728796 -155686446 - HY1 scRNA scRNA 0 112 1 1403 183 55 48 chr6 26729103 26729393 -155685849 - AluJo SINE Alu -15 297 6 1281 179 50 56 chr6 26729521 26729823 -155685419 - AluJo SINE Alu -12 300 1 35 24 0 0 chr6 26731280 26731322 -155683920 + AT_rich Low_complexity Low_complexity 1 42 0 930 88 8 0 chr6 26731723 26731848 -155683394 - AluSg/x SINE Alu -8 304 179 297 266 11 11 chr6 26732429 26732523 -155682719 - MIR SINE MIR -2 260 167 1588 118 45 5 chr6 26732753 26732973 -155682269 + MER30 DNA MER1_type 1 229 -1 32 43 0 0 chr6 26733580 26733626 -155681616 + AT_rich Low_complexity Low_complexity 1 46 0 2320 83 7 0 chr6 26733626 26733916 -155681326 - AluY SINE Alu -19 292 1 663 192 15 15 chr6 26733919 26734049 -155681193 - FLAM_A SINE Alu -3 130 1 2215 120 0 0 chr6 26734081 26734381 -155680861 - AluSx SINE Alu -12 300 1 240 185 0 0 chr6 26734435 26734489 -155680753 + (CA)n Simple_repeat Simple_repeat 1 54 0 1733 104 0 89 chr6 26735260 26735540 -155679702 + AluJo SINE Alu 1 255 -57 398 247 297 27 chr6 26736539 26736940 -155678302 - L2 LINE L2 -1 3312 2804 398 287 255 30 chr6 26737606 26737837 -155677405 - L2 LINE L2 0 3313 3135 2166 97 3 3 chr6 26737837 26738126 -155677116 - AluSc SINE Alu -20 289 1 398 287 255 30 chr6 26738126 26738474 -155676768 - L2 LINE L2 -178 3135 2866 865 240 33 0 chr6 26738474 26738657 -155676585 + MER5A DNA MER1_type 1 189 0 398 287 255 30 chr6 26738657 26738774 -155676468 - L2 LINE L2 -447 2866 2460 492 132 29 0 chr6 26738793 26738861 -155676381 - AluSg/x SINE Alu -26 283 214 569 271 112 93 chr6 26738874 26739313 -155675929 - L2 LINE L2 -901 2413 1967 185 322 113 0 chr6 26739952 26740067 -155675175 - MIR SINE MIR -16 246 119 26 0 0 0 chr6 26740763 26740789 -155674453 + AT_rich Low_complexity Low_complexity 1 26 0 486 291 37 63 chr6 26741041 26741309 -155673933 + Charlie8 DNA MER1_type 1 261 -2156 944 96 0 89 chr6 26742516 26742662 -155672580 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr6 26742847 26742868 -155672374 + (T)n Simple_repeat Simple_repeat 1 21 0 321 378 41 12 chr6 26743373 26743545 -155671697 + L2 LINE L2 2581 2757 -557 671 126 0 63 chr6 26743986 26744097 -155671145 - FLAM_A SINE Alu -14 128 25 189 274 20 0 chr6 26744230 26744281 -155670961 - L2 LINE L2 0 3313 3262 786 266 154 11 chr6 26744286 26744662 -155670580 - L2 LINE L2 -631 2683 2254 417 86 0 0 chr6 26744693 26744751 -155670491 + (CA)n Simple_repeat Simple_repeat 2 59 0 293 231 128 60 chr6 26744865 26744982 -155670260 + MLT1K LTR MaLR 188 312 -276 417 173 36 101 chr6 26745167 26745239 -155670003 + MER103 DNA DNA 34 94 -72 1648 162 10 20 chr6 26745239 26745536 -155669706 + AluJo SINE Alu 1 294 -18 417 173 36 101 chr6 26745536 26745602 -155669640 + MER103 DNA DNA 94 163 -3 32 0 0 0 chr6 26746586 26746618 -155668624 + AT_rich Low_complexity Low_complexity 1 32 0 671 222 162 0 chr6 26748383 26748568 -155666674 + MIR SINE MIR 8 222 -40 283 238 0 60 chr6 26748635 26748719 -155666523 + L2 LINE L2 3234 3312 -1 2111 99 0 0 chr6 26749965 26750238 -155665004 + AluSx SINE Alu 33 305 -7 287 182 152 15 chr6 26751713 26751779 -155663463 + MIR SINE MIR 50 124 -138 243 0 0 0 chr6 26752736 26752763 -155662479 + (T)n Simple_repeat Simple_repeat 1 27 0 645 278 45 10 chr6 26753015 26753213 -155662029 - MIR SINE MIR -27 235 31 2004 112 29 0 chr6 26753400 26753678 -155661564 + AluSx SINE Alu 1 286 -26 318 232 126 46 chr6 26754218 26754369 -155660873 - MIR3 SINE MIR -41 167 5 281 259 0 0 chr6 26754408 26754462 -155660780 + MIR SINE MIR 23 76 -186 214 350 0 38 chr6 26754713 26754793 -155660449 + L3b LINE CR1 1503 1579 -4 6431 269 131 27 chr6 26755389 26757570 -155657672 + L2 LINE L2 2 2591 -722 2159 131 0 0 chr6 26757570 26757875 -155657367 - AluSx SINE Alu -7 305 1 6431 269 131 27 chr6 26757875 26758672 -155656570 + L2 LINE L2 2591 3304 -9 1400 207 7 3 chr6 26759551 26759836 -155655406 - L1MD3 LINE L1 0 7995 7710 4594 159 43 47 chr6 26759922 26760099 -155655143 - MER6 DNA MER2_type 0 865 689 2181 84 28 0 chr6 26760099 26760385 -155654857 - AluSx SINE Alu -13 299 6 4594 159 43 47 chr6 26760385 26760460 -155654782 - MER6 DNA MER2_type -176 689 615 2393 98 0 0 chr6 26760460 26760767 -155654475 + AluSc SINE Alu 1 307 -2 4594 159 43 47 chr6 26760767 26761382 -155653860 - MER6 DNA MER2_type -250 615 1 301 305 31 31 chr6 26761426 26761554 -155653688 + Charlie8 DNA MER1_type 19 146 -2271 2371 100 0 0 chr6 26761684 26761985 -155653257 - AluSc SINE Alu -8 301 1 484 297 130 23 chr6 26762220 26762520 -155652722 + MER102b DNA MER1_type 2 333 -8 1568 172 45 3 chr6 26763048 26763366 -155651876 + MER33 DNA MER1_type 1 324 0 439 316 107 20 chr6 26763595 26763791 -155651451 + MIR SINE MIR 2 214 -48 476 241 193 0 chr6 26765162 26765341 -155649901 - MIR SINE MIR 0 262 45 877 194 74 69 chr6 26765841 26766058 -155649184 + MER20 DNA MER1_type 2 219 0 1610 157 7 65 chr6 26766122 26766428 -155648814 - AluJo SINE Alu -15 297 10 300 303 0 0 chr6 26766548 26766624 -155648618 + MLT1L LTR MaLR 374 449 -166 196 320 61 48 chr6 26766741 26766888 -155648354 - L3 LINE CR1 -127 1450 1302 1011 213 22 100 chr6 26767329 26767648 -155647594 + AluYb8 SINE Alu 11 304 -14 638 144 48 24 chr6 26767723 26767848 -155647394 - L1MB2 LINE L1 -1 6170 6043 2836 19 0 0 chr6 26768006 26768315 -155646927 - AluYb8 SINE Alu -9 309 1 1877 167 0 7 chr6 26769272 26769566 -155645676 + AluSx SINE Alu 15 306 -6 812 198 146 28 chr6 26773593 26773899 -155641343 + MSTC LTR MaLR 1 368 -59 213 159 0 0 chr6 26773920 26773964 -155641278 + A-rich Low_complexity Low_complexity 1 44 0 331 167 0 0 chr6 26773986 26774040 -155641202 + MSTC LTR MaLR 342 395 -1 2019 115 18 0 chr6 26774351 26774653 -155640589 + AluSx SINE Alu 1 307 0 2215 138 0 0 chr6 26774711 26775023 -155640219 + AluSx SINE Alu 1 312 0 274 192 333 33 chr6 26775149 26775269 -155639973 + MER103 DNA DNA 8 163 -3 1469 171 120 116 chr6 26775711 26775903 -155639339 - L1MD2 LINE L1 -34 6325 6135 1627 154 33 40 chr6 26775903 26776202 -155639040 - AluJb SINE Alu -15 297 1 1469 171 120 116 chr6 26776202 26776485 -155638757 - L1MD2 LINE L1 -224 6135 5840 2097 99 0 3 chr6 26776512 26776794 -155638448 - AluSq SINE Alu -3 310 30 273 325 49 41 chr6 26776810 26776933 -155638309 - MIR3 SINE MIR -73 135 12 21 36 0 0 chr6 26777033 26777061 -155638181 + AT_rich Low_complexity Low_complexity 1 28 0 1534 199 10 29 chr6 26777511 26777817 -155637425 - AluJb SINE Alu -12 300 1 1359 187 56 49 chr6 26777971 26778255 -155636987 - AluJo SINE Alu -26 286 1 990 265 70 40 chr6 26778257 26778631 -155636611 + L2 LINE L2 2928 3312 -1 2078 121 0 4 chr6 26779737 26780018 -155635224 - AluSx SINE Alu -32 280 1 21 0 0 0 chr6 26781338 26781359 -155633883 + AT_rich Low_complexity Low_complexity 1 21 0 14394 192 46 19 chr6 26782734 26785548 -155629694 - L1PB3 LINE L1 -7 6204 3469 2181 96 10 7 chr6 26785548 26785840 -155629402 - AluSc SINE Alu -16 293 1 14394 192 46 19 chr6 26785840 26788050 -155627192 - L1PB3 LINE L1 -2742 3469 964 2128 122 3 0 chr6 26788050 26788338 -155626904 - AluSq SINE Alu -24 289 1 14394 192 46 19 chr6 26788338 26789325 -155625917 - L1PB3 LINE L1 -5247 964 6 3877 269 82 30 chr6 26789294 26790856 -155624386 - L1PA15-16 LINE L1 -5223 1640 9 * 640 317 32 18 chr6 26790904 26791125 -155624117 + MIR SINE MIR 18 241 -21 191 219 0 0 chr6 26791175 26791207 -155624035 - L2 LINE L2 -96 3176 3145 291 259 86 12 chr6 26791299 26791380 -155623862 - MER91C DNA MER1_type -30 110 24 1097 219 27 5 chr6 26792224 26792443 -155622799 - MER58A DNA MER1_type 0 224 1 250 321 92 9 chr6 26792674 26792783 -155622459 - L2 LINE L2 -5 3267 3150 2060 223 60 75 chr6 26793294 26794056 -155621186 - MER21B LTR ERV1 -62 869 27 1754 124 0 0 chr6 26794061 26794295 -155620947 - AluSx SINE Alu -17 295 62 764 111 26 0 chr6 26794296 26794413 -155620829 - LTR12 LTR ERV1 -236 478 359 354 210 0 0 chr6 26794413 26794494 -155620748 - LTR30 LTR ERV1 -98 624 544 1471 94 27 50 chr6 26794498 26794772 -155620470 - LTR12 LTR ERV1 -440 1683 57 248 231 0 0 chr6 26794774 26794826 -155620416 - LTR30 LTR ERV1 -670 52 1 461 134 0 0 chr6 26794826 26794893 -155620349 - AluSx SINE Alu -246 67 1 574 183 29 0 chr6 26795557 26795661 -155619581 + U6 snRNA snRNA 1 107 0 2149 94 3 3 chr6 26795789 26796097 -155619145 - AluSx SINE Alu 0 308 1 444 333 62 35 chr6 26796917 26797061 -155618181 - L2 LINE L2 -7 3265 3118 322 336 93 22 chr6 26797194 26797420 -155617822 - L2 LINE L2 -451 2863 2622 306 260 0 83 chr6 26797447 26797543 -155617699 - L2 LINE L2 -5 3308 3221 21 57 0 0 chr6 26798084 26798119 -155617123 + AT_rich Low_complexity Low_complexity 1 35 0 1844 130 41 4 chr6 26798231 26798501 -155616741 - AluSx SINE Alu -32 280 1 1010 153 89 21 chr6 26798657 26798847 -155616395 + AluSg/x SINE Alu 98 300 -12 2382 73 10 7 chr6 26800077 26800377 -155614865 - AluSg SINE Alu -9 301 1 1526 186 0 44 chr6 26800380 26800696 -155614546 - AluJo SINE Alu 0 303 1 643 167 0 25 chr6 26801177 26801297 -155613945 - FLAM_A SINE Alu -14 128 12 23 0 0 0 chr6 26802067 26802090 -155613152 + AT_rich Low_complexity Low_complexity 1 23 0 336 111 0 0 chr6 26802096 26802150 -155613092 + (TA)n Simple_repeat Simple_repeat 2 55 0 1780 187 3 3 chr6 26802150 26802450 -155612792 - AluJb SINE Alu -12 300 1 2088 95 7 39 chr6 26802524 26802830 -155612412 - AluSx SINE Alu -16 296 1 534 157 0 111 chr6 26803408 26803561 -155611681 - MER3 DNA MER1_type -5 204 69 235 266 13 76 chr6 26803586 26803665 -155611577 - MIR SINE MIR -79 129 56 519 308 86 71 chr6 26804007 26804850 -155610392 + L2 LINE L2 2454 3313 0 474 347 129 20 chr6 26805099 26805586 -155609656 - L2 LINE L2 -562 2752 2213 21 0 0 0 chr6 26807675 26807696 -155607546 + AT_rich Low_complexity Low_complexity 1 21 0 505 117 0 0 chr6 26807752 26807829 -155607413 - U13 snRNA snRNA -27 77 1 2101 92 0 86 chr6 26808259 26808584 -155606658 + AluSc SINE Alu 1 297 -12 660 212 0 0 chr6 26808909 26809022 -155606220 + FLAM_A SINE Alu 2 114 -19 244 241 0 0 chr6 26810918 26810972 -155604270 - MER5A DNA MER1_type 0 189 136 444 123 0 0 chr6 26811647 26811720 -155603522 + (TG)n Simple_repeat Simple_repeat 2 74 0 832 313 153 10 chr6 26811815 26812215 -155603027 - L3 LINE CR1 -2 1575 1119 23 0 0 0 chr6 26812432 26812455 -155602787 + AT_rich Low_complexity Low_complexity 1 23 0 220 321 48 12 chr6 26812562 26812646 -155602596 - L2 LINE L2 -1 3271 3185 257 339 62 23 chr6 26812722 26812852 -155602390 + MIR SINE MIR 52 186 -76 2403 97 3 0 chr6 26812894 26813194 -155602048 + AluSp SINE Alu 1 301 -12 1442 132 117 60 chr6 26813215 26813496 -155601746 + AluJo SINE Alu 5 301 -11 549 245 7 60 chr6 26813907 26814058 -155601184 - MIR SINE MIR -64 198 56 187 167 0 0 chr6 26815895 26815925 -155599317 - L3 LINE CR1 -7 1570 1541 2549 77 0 0 chr6 26815970 26816281 -155598961 - AluSq SINE Alu -2 311 1 433 255 74 27 chr6 26816412 26816561 -155598681 - MIR3 SINE MIR -32 176 21 182 337 11 22 chr6 26816686 26816775 -155598467 - L2 LINE L2 -63 3209 3122 279 220 119 68 chr6 26819606 26819724 -155595518 + MIR SINE MIR 50 173 -89 594 302 80 9 chr6 26820584 26820796 -155594446 - MIR SINE MIR -4 258 32 22 0 0 0 chr6 26821708 26821730 -155593512 + AT_rich Low_complexity Low_complexity 1 22 0 262 293 35 9 chr6 26822006 26822122 -155593120 + (TA)n Simple_repeat Simple_repeat 1 119 0 245 267 70 35 chr6 26822211 26822297 -155592945 + MIR3 SINE MIR 85 173 -35 231 313 18 60 chr6 26822785 26822951 -155592291 + MIR SINE MIR 59 217 -45 662 192 181 6 chr6 26823348 26823525 -155591717 - MER3 DNA MER1_type 0 209 2 23 0 0 0 chr6 26823815 26823838 -155591404 + AT_rich Low_complexity Low_complexity 1 23 0 979 279 128 53 chr6 26823962 26824717 -155590525 + L2 LINE L2 2476 3309 -4 2278 107 3 0 chr6 26825208 26825506 -155589736 + AluSx SINE Alu 1 299 -13 526 294 29 7 chr6 26826709 26826845 -155588397 - L2 LINE L2 0 3272 3134 223 258 45 0 chr6 26826990 26827056 -155588186 - L2 LINE L2 -342 2930 2862 874 297 222 31 chr6 26827086 26828273 -155586969 - L2 LINE L2 -555 2759 1347 321 372 58 23 chr6 26828283 26828455 -155586787 - L2 LINE L2 -2129 1185 1008 527 244 160 6 chr6 26828543 26828699 -155586543 - MER5A DNA MER1_type -1 188 9 1834 156 30 7 chr6 26828699 26829001 -155586241 + AluJb SINE Alu 1 309 -3 182 278 44 56 chr6 26829007 26829097 -155586145 - L2 LINE L2 -2441 873 785 524 177 40 24 chr6 26829160 26829284 -155585958 - MIR SINE MIR -23 239 114 1036 183 75 11 chr6 26829792 26829999 -155585243 + AluJo SINE Alu 86 304 0 450 79 0 0 chr6 26830015 26830078 -155585164 + (TG)n Simple_repeat Simple_repeat 2 64 0 327 49 0 0 chr6 26831133 26831174 -155584068 + (TG)n Simple_repeat Simple_repeat 1 41 0 12517 162 31 43 chr6 26832185 26832521 -155582721 - Tigger1 DNA MER2_type 0 2418 2080 2325 91 3 0 chr6 26832521 26832817 -155582425 - AluSp SINE Alu -14 299 3 12517 162 31 43 chr6 26832817 26833092 -155582150 - Tigger1 DNA MER2_type -338 2080 1803 5995 52 1 3 chr6 26833092 26833841 -155581401 - L1PA6 LINE L1 -3 6151 5404 12517 162 31 43 chr6 26833841 26834249 -155580993 - Tigger1 DNA MER2_type -615 1803 1392 1964 88 44 15 chr6 26834249 26834522 -155580720 - AluY SINE Alu -10 301 21 12517 162 31 43 chr6 26834522 26835945 -155579297 - Tigger1 DNA MER2_type -1026 1392 3 318 320 56 118 chr6 26836928 26837538 -155577704 + L2 LINE L2 2716 3272 0 1539 146 100 0 chr6 26837627 26837887 -155577355 - AluJb SINE Alu -6 306 21 187 254 17 17 chr6 26837903 26837962 -155577280 - MIR SINE MIR -44 218 160 362 184 0 23 chr6 26839435 26839522 -155575720 + CT-rich Low_complexity Low_complexity 1 85 0 4537 198 71 47 chr6 26841062 26842447 -155572795 - Charlie1a DNA MER1_type -17 1438 21 770 244 98 10 chr6 26842867 26843072 -155572170 - MER58A DNA MER1_type -1 223 1 200 241 19 19 chr6 26844015 26844069 -155571173 + L2 LINE L2 3150 3203 -69 21 0 0 0 chr6 26845706 26845727 -155569515 + AT_rich Low_complexity Low_complexity 1 21 0 433 238 29 12 chr6 26845929 26846101 -155569141 + Charlie7 DNA MER1_type 2437 2611 -1 1355 78 16 11 chr6 26847042 26847233 -155568009 + AluSg/x SINE Alu 112 303 -7 817 233 75 17 chr6 26847406 26847646 -155567596 + MIR SINE MIR 6 259 -3 567 43 0 0 chr6 26847935 26848005 -155567237 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1117 162 16 117 chr6 26848029 26848276 -155566966 - AluJb SINE Alu -90 222 1 315 280 57 29 chr6 26849376 26849551 -155565691 - L1ME3A LINE L1 -310 5860 5681 288 197 30 0 chr6 26850068 26850134 -155565108 - MLT1G1 LTR MaLR 0 595 528 1419 224 35 17 chr6 26850297 26850972 -155564270 - L1ME LINE L1 -414 5752 5073 189 237 102 17 chr6 26851605 26851664 -155563578 + L2 LINE L2 3248 3311 -2 2687 30 0 0 chr6 26852544 26852847 -155562395 - AluY SINE Alu -8 303 1 388 290 84 19 chr6 26853061 26853216 -155562026 + MIR SINE MIR 63 227 -35 189 0 0 0 chr6 26853797 26853818 -155561424 + (A)n Simple_repeat Simple_repeat 1 21 0 1772 152 35 17 chr6 26853968 26854258 -155560984 + AluJb SINE Alu 1 295 -17 361 317 35 35 chr6 26855576 26855721 -155559521 + MIR3 SINE MIR 10 154 -54 223 321 49 0 chr6 26855727 26855808 -155559434 + L2 LINE L2 3229 3313 0 279 114 0 0 chr6 26858258 26858302 -155556940 + (TG)n Simple_repeat Simple_repeat 1 44 0 1588 174 0 25 chr6 26858302 26858578 -155556664 - AluJb SINE Alu -31 281 13 344 256 179 0 chr6 26858990 26859107 -155556135 + MIR SINE MIR 105 242 -20 219 362 54 27 chr6 26859079 26859228 -155556014 + L2 LINE L2 2926 3078 -194 * 1751 154 22 31 chr6 26859299 26859655 -155555587 - MLT1A1 LTR MaLR -12 353 1 382 293 53 23 chr6 26859663 26859796 -155555446 + L2 LINE L2 3136 3272 0 654 243 180 22 chr6 26860205 26860427 -155554815 + MIR SINE MIR 6 262 0 22 0 0 0 chr6 26860845 26860867 -155554375 + AT_rich Low_complexity Low_complexity 1 22 0 1508 201 142 102 chr6 26861488 26862010 -155553232 - MLT1E1 LTR MaLR -2 652 99 2274 143 55 31 chr6 26862010 26862430 -155552812 - Tigger2a DNA MER2_type -2 432 3 1508 201 142 102 chr6 26862430 26862533 -155552709 - MLT1E1 LTR MaLR -555 99 2 2381 66 0 26 chr6 26862836 26863140 -155552102 - AluY SINE Alu -15 296 1 1912 188 53 34 chr6 26863668 26863849 -155551393 + L1MB7 LINE L1 5411 5587 -597 2309 78 14 0 chr6 26863849 26864142 -155551100 + AluY SINE Alu 1 297 -14 1912 188 53 34 chr6 26864142 26864454 -155550788 + L1MB7 LINE L1 5587 5913 -271 2312 105 0 3 chr6 26865533 26865839 -155549403 + AluSc SINE Alu 1 305 -4 413 194 160 74 chr6 26866275 26866450 -155548792 - MER112 DNA MER1_type -6 254 65 1343 163 0 14 chr6 26866578 26866799 -155548443 - AluJo SINE Alu -8 304 87 653 279 25 0 chr6 26867027 26867188 -155548054 + MIR SINE MIR 33 197 -65 2237 105 0 0 chr6 26867241 26867537 -155547705 + AluY SINE Alu 1 296 -15 402 204 133 92 chr6 26867829 26868025 -155547217 - L1ME3 LINE L1 -84 6078 5875 * 1355 253 88 54 chr6 26868024 26869347 -155545895 - L1MEc LINE L1 -2629 3586 2219 53 0 0 0 chr6 26869347 26869400 -155545842 + AT_rich Low_complexity Low_complexity 1 53 0 412 216 125 68 chr6 26869400 26869451 -155545791 - L1MEc LINE L1 -4130 2266 2219 2011 78 37 0 chr6 26869451 26869720 -155545522 - AluY SINE Alu -2 309 31 412 216 125 68 chr6 26869720 26869844 -155545398 - L1MEc LINE L1 -4177 2219 2081 372 267 26 0 chr6 26869877 26869993 -155545249 - MER103 DNA DNA -45 121 3 28 61 0 0 chr6 26871155 26871204 -155544038 + AT_rich Low_complexity Low_complexity 1 49 0 182 299 178 9 chr6 26871862 26871969 -155543273 + L2 LINE L2 3139 3263 -9 497 303 147 9 chr6 26872008 26872226 -155543016 + MIR SINE MIR 1 248 -14 219 217 0 0 chr6 26872231 26872291 -155542951 + (CACCAT)n Simple_repeat Simple_repeat 2 61 0 189 0 0 0 chr6 26872412 26872433 -155542809 + (A)n Simple_repeat Simple_repeat 1 21 0 1861 147 34 0 chr6 26872496 26872789 -155542453 - AluJb SINE Alu -9 303 1 903 147 7 13 chr6 26873642 26873792 -155541450 + FRAM SINE Alu 22 170 -6 23 54 0 0 chr6 26873794 26873831 -155541411 + AT_rich Low_complexity Low_complexity 1 37 0 2110 90 0 63 chr6 26874143 26874466 -155540776 - AluSx SINE Alu 0 304 1 24 0 0 0 chr6 26874513 26874537 -155540705 + AT_rich Low_complexity Low_complexity 1 24 0 212 196 0 22 chr6 26875556 26875602 -155539640 + L2 LINE L2 3265 3309 -4 2115 110 0 0 chr6 26877616 26877927 -155537315 + AluSg SINE Alu 1 311 0 21 0 0 0 chr6 26878165 26878186 -155537056 + AT_rich Low_complexity Low_complexity 1 21 0 1735 180 0 0 chr6 26879147 26879496 -155535746 + AluJb SINE Alu 1 349 0 22 0 0 0 chr6 26880542 26880564 -155534678 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr6 26881392 26881433 -155533809 + AT_rich Low_complexity Low_complexity 1 41 0 913 248 116 25 chr6 26882147 26882465 -155532777 - MLT1I LTR MaLR 0 409 63 198 0 0 0 chr6 26882815 26882837 -155532405 + (TTA)n Simple_repeat Simple_repeat 2 23 0 362 20 0 0 chr6 26882856 26882905 -155532337 - L1PA3 LINE L1 0 6155 6107 356 266 75 0 chr6 26883002 26883096 -155532146 - MIR SINE MIR -3 259 159 24 0 0 0 chr6 26884082 26884106 -155531136 + AT_rich Low_complexity Low_complexity 1 24 0 357 24 0 0 chr6 26884270 26884312 -155530930 + (TG)n Simple_repeat Simple_repeat 2 43 0 2298 95 17 0 chr6 26884931 26885227 -155530015 + AluSx SINE Alu 1 301 -11 295 287 117 11 chr6 26885426 26885520 -155529722 - L2 LINE L2 0 3313 3210 494 264 29 14 chr6 26885987 26886127 -155529115 - MIR SINE MIR -36 226 85 501 286 21 16 chr6 26886127 26886316 -155528926 - LTR16A LTR ERVL 0 450 261 379 276 70 54 chr6 26887369 26887554 -155527688 - MIR3 SINE MIR -18 190 3 333 324 92 23 chr6 26888225 26888398 -155526844 - MIR3 SINE MIR -19 189 5 2194 88 27 10 chr6 26889502 26889798 -155525444 - AluY SINE Alu -10 301 1 389 354 25 6 chr6 26890107 26890268 -155524974 + MIR SINE MIR 73 236 -26 209 313 43 52 chr6 26890426 26890541 -155524701 + L2 LINE L2 3178 3291 -22 198 0 0 0 chr6 26890729 26890751 -155524491 + (A)n Simple_repeat Simple_repeat 1 22 0 180 135 0 0 chr6 26890976 26891013 -155524229 + (A)n Simple_repeat Simple_repeat 1 37 0 2212 83 24 0 chr6 26891018 26891306 -155523936 + AluSg1 SINE Alu 1 295 -14 274 233 14 0 chr6 26891735 26891808 -155523434 - MER116 DNA Mariner -6 74 1 222 320 117 16 chr6 26893529 26893657 -155521585 + MIR SINE MIR 13 153 -109 2054 153 0 7 chr6 26894191 26894492 -155520750 - AluSx SINE Alu -13 299 1 2069 118 17 0 chr6 26895008 26895282 -155519960 + AluSx SINE Alu 3 302 -10 181 0 0 0 chr6 26895282 26895302 -155519940 + (CAAA)n Simple_repeat Simple_repeat 1 180 0 2069 118 17 0 chr6 26895302 26895314 -155519928 + AluSx SINE Alu 302 312 0 25 0 0 0 chr6 26895471 26895496 -155519746 + AT_rich Low_complexity Low_complexity 1 25 0 633 182 136 14 chr6 26896640 26896860 -155518382 - MER5C DNA MER1_type -12 312 66 758 171 0 0 chr6 26897161 26897278 -155517964 + FLAM_A SINE Alu 5 121 -12 281 167 0 0 chr6 26897576 26897624 -155517618 + L2 LINE L2 3261 3308 -5 25 0 0 0 chr6 26897786 26897811 -155517431 + AT_rich Low_complexity Low_complexity 1 25 0 1908 139 59 10 chr6 26898486 26898774 -155516468 - AluSx SINE Alu -10 302 1 400 237 79 9 chr6 26898869 26898983 -155516259 - MIR SINE MIR 0 262 141 2137 98 3 3 chr6 26899661 26899969 -155515273 + AluSx SINE Alu 1 308 0 560 192 29 0 chr6 26900096 26900200 -155515042 - U6 snRNA snRNA 0 107 1 643 167 0 25 chr6 26900990 26901110 -155514132 + FLAM_A SINE Alu 12 128 -14 343 319 159 22 chr6 26902536 26902718 -155512524 - MIR SINE MIR -33 229 23 210 255 20 0 chr6 26902860 26902911 -155512331 + MIR SINE MIR 31 82 -126 407 346 0 15 chr6 26903077 26903210 -155512032 - MIR SINE MIR -112 150 20 188 296 144 16 chr6 26903391 26903516 -155511726 - MIR SINE MIR -120 142 2 247 299 125 14 chr6 26904914 26905058 -155510184 - MIR3 SINE MIR -1 207 48 717 242 34 83 chr6 26905134 26905276 -155509966 - MIR SINE MIR 0 262 137 1611 184 21 7 chr6 26905276 26905559 -155509683 + AluJo SINE Alu 6 292 -20 717 242 34 83 chr6 26905559 26905680 -155509562 - MIR SINE MIR -125 137 12 221 309 0 18 chr6 26907199 26907254 -155507988 - MIR SINE MIR -186 76 23 284 297 14 0 chr6 26907276 26907350 -155507892 + MER81 DNA DNA 40 114 0 1084 151 0 0 chr6 26908139 26908298 -155506944 - FRAM SINE Alu -7 159 1 210 233 0 0 chr6 26908416 26908459 -155506783 + C-rich Low_complexity Low_complexity 6 48 0 203 237 10 41 chr6 26909020 26909117 -155506125 + (CAGAGA)n Simple_repeat Simple_repeat 4 97 0 984 218 43 0 chr6 26909285 26909496 -155505746 + MIR SINE MIR 2 221 -41 345 279 135 0 chr6 26909646 26909750 -155505492 + MIR3 SINE MIR 4 121 -87 409 296 82 0 chr6 26910749 26910908 -155504334 + MIR SINE MIR 77 248 -14 243 306 0 16 chr6 26911068 26911130 -155504112 - MIR SINE MIR -179 83 23 297 197 16 0 chr6 26911306 26911367 -155503875 + MER45 DNA AcHobo 62 123 -55 189 254 18 18 chr6 26912084 26912139 -155503103 + MIR SINE MIR 81 135 -73 654 238 12 41 chr6 26913910 26914082 -155501160 - MIR SINE MIR -73 189 23 6945 20 6 1 chr6 26914190 26915000 -155500242 + L1PA3 LINE L1 5339 6152 -3 310 295 22 14 chr6 26916193 26916332 -155498910 - L1ME3A LINE L1 -9 6161 6022 313 325 84 18 chr6 26917162 26917328 -155497914 + L2 LINE L2 2910 3086 -186 479 117 13 0 chr6 26919864 26919941 -155495301 + MADE1 DNA Mariner 1 78 -2 238 167 167 0 chr6 26920681 26920747 -155494495 - L1ME1 LINE L1 -5 6161 6085 5459 218 56 56 chr6 26920760 26920907 -155494335 - L1ME1 LINE L1 -166 6000 5855 1208 84 6 0 chr6 26920907 26921073 -155494169 - L1PA10 LINE L1 -3 6165 5999 5459 218 56 56 chr6 26921073 26922766 -155492476 - L1ME1 LINE L1 -311 5855 4164 1489 221 63 16 chr6 26922766 26923210 -155492032 + LTR40c LTR ERVL 1 465 0 5459 218 56 56 chr6 26923210 26923591 -155491651 - L1ME1 LINE L1 -2002 4164 3785 2150 110 0 0 chr6 26923591 26923863 -155491379 - AluSc SINE Alu -25 284 13 5459 218 56 56 chr6 26923863 26924163 -155491079 - L1ME1 LINE L1 -2381 3785 3487 1756 184 0 3 chr6 26924163 26924462 -155490780 - AluJb SINE Alu -14 298 1 5459 218 56 56 chr6 26924462 26924747 -155490495 - L1ME1 LINE L1 -2679 3487 3213 994 26 0 0 chr6 26924747 26924864 -155490378 - L1PA3 LINE L1 -1 6154 6038 5459 218 56 56 chr6 26924864 26924979 -155490263 - L1ME1 LINE L1 -2953 3213 3100 279 54 0 0 chr6 26924995 26925032 -155490210 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr6 26925836 26925864 -155489378 + AT_rich Low_complexity Low_complexity 1 28 0 309 236 14 0 chr6 26930026 26930098 -155485144 - Charlie8 DNA MER1_type 0 2417 2345 2323 101 0 13 chr6 26930274 26930582 -155484660 + AluSx SINE Alu 1 304 -8 2017 146 0 26 chr6 26930653 26930962 -155484280 + AluJb SINE Alu 1 301 -11 823 301 49 0 chr6 26931008 26931254 -155483988 + MIR SINE MIR 5 262 0 363 322 34 14 chr6 26933514 26933678 -155481564 + MIR SINE MIR 32 192 -61 606 267 48 6 chr6 26934255 26934420 -155480822 + MIR3 SINE MIR 31 202 -6 26 0 0 0 chr6 26936439 26936465 -155478777 + AT_rich Low_complexity Low_complexity 1 26 0 3247 148 89 8 chr6 26937093 26937498 -155477744 - LTR51 LTR ERV1 0 671 197 2465 63 0 3 chr6 26937498 26937798 -155477444 + AluY SINE Alu 5 303 -8 3247 148 89 8 chr6 26937798 26938013 -155477229 - LTR51 LTR ERV1 -474 197 1 372 192 327 0 chr6 26938418 26938522 -155476720 + MER5A DNA MER1_type 51 188 -1 319 352 56 56 chr6 26938537 26938804 -155476438 + L2 LINE L2 2970 3236 -36 1696 171 45 4 chr6 26938837 26939106 -155476136 - AluJb SINE Alu -32 280 1 412 285 117 0 chr6 26939346 26939483 -155475759 - MIR SINE MIR -25 237 85 4344 219 75 21 chr6 26939641 26941981 -155473261 + L1MCb LINE L1 10 2595 -4150 2127 77 39 0 chr6 26942035 26942158 -155473084 + AluY SINE Alu 1 118 -193 414 0 0 0 chr6 26942158 26942204 -155473038 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2127 77 39 0 chr6 26942204 26942365 -155472877 + AluY SINE Alu 118 296 -15 239 150 38 25 chr6 26942469 26942549 -155472693 + CT-rich Low_complexity Low_complexity 1 81 0 1996 177 3 0 chr6 26942549 26942859 -155472383 - AluJo SINE Alu -1 311 1 22 0 0 0 chr6 26945436 26945458 -155469784 + AT_rich Low_complexity Low_complexity 1 22 0 360 297 114 29 chr6 26945489 26945664 -155469578 + HAL1 LINE L1 840 1029 -1478 1112 16 0 0 chr6 26945664 26945792 -155469450 + AluYb8 SINE Alu 191 318 0 390 281 43 110 chr6 26945792 26946236 -155469006 + HAL1 LINE L1 1017 1460 -1047 1413 148 30 25 chr6 26946244 26946481 -155468761 + AluSg1 SINE Alu 1 238 -71 341 317 38 11 chr6 26946958 26947141 -155468101 + HAL1b LINE L1 746 933 -415 304 241 124 22 chr6 26947405 26947542 -155467700 + HAL1b LINE L1 1190 1340 -8 2036 124 0 0 chr6 26947805 26948078 -155467164 - AluSx SINE Alu -39 273 1 973 90 8 0 chr6 26948094 26948228 -155467014 - AluSp/q SINE Alu 0 313 179 949 197 64 0 chr6 26948798 26948986 -155466256 - MER58A DNA MER1_type -1 223 24 260 122 41 0 chr6 26949020 26949069 -155466173 + GA-rich Low_complexity Low_complexity 3 53 0 695 272 29 24 chr6 26949303 26949509 -155465733 + MIR SINE MIR 8 214 -48 410 111 133 22 chr6 26950213 26950303 -155464939 - MLT2E LTR ERVL -19 609 510 21 36 0 0 chr6 26950522 26950550 -155464692 + AT_rich Low_complexity Low_complexity 1 28 0 369 277 25 25 chr6 26950604 26950723 -155464519 - L2 LINE L2 0 3313 3195 809 299 75 57 chr6 26951001 26951479 -155463763 + L3 LINE CR1 880 1366 -211 271 265 73 0 chr6 26953453 26953521 -155461721 + L2 LINE L2 3200 3272 0 247 304 0 14 chr6 26954368 26954437 -155460805 + MIR3 SINE MIR 9 76 -132 417 216 11 23 chr6 26954497 26954585 -155460657 + MER21B LTR ERV1 1 87 -776 2492 241 35 71 chr6 26954606 26955433 -155459809 + MER21B LTR ERV1 16 812 -51 1455 69 0 0 chr6 26955485 26955660 -155459582 + AluSp SINE Alu 136 310 -3 398 277 158 23 chr6 26957142 26957452 -155457790 - L1ME4a LINE L1 -1 6120 5769 2087 119 0 16 chr6 26957663 26957966 -155457276 - AluSx SINE Alu -14 298 1 229 231 108 39 chr6 26957966 26958096 -155457146 - L1P5 LINE L1 -711 5440 5302 22 0 0 0 chr6 26958354 26958376 -155456866 + AT_rich Low_complexity Low_complexity 1 22 0 235 265 188 30 chr6 26959071 26959243 -155455999 + MIR3 SINE MIR 5 203 -5 448 293 53 60 chr6 26960077 26960614 -155454628 + L1MEd LINE L1 1044 1579 -4550 360 0 0 0 chr6 26960614 26960654 -155454588 + (CA)n Simple_repeat Simple_repeat 2 41 0 448 293 53 60 chr6 26960654 26960762 -155454480 + L1MEd LINE L1 1579 1686 -4443 813 195 100 0 chr6 26960919 26961109 -155454133 - MER3 DNA MER1_type 0 209 1 914 292 87 20 chr6 26961328 26961975 -155453267 + L1MEd LINE L1 2350 3039 -3090 679 301 15 0 chr6 26962166 26962365 -155452877 + L1MEd LINE L1 4036 4237 -1892 510 146 0 27 chr6 26962425 26962699 -155452543 + AluJo SINE Alu 1 312 0 483 283 95 61 chr6 26962699 26962775 -155452467 + L1MEd LINE L1 4308 4380 -1749 2002 119 0 27 chr6 26962775 26963069 -155452173 + AluSx SINE Alu 1 286 -26 483 283 95 61 chr6 26963069 26963550 -155451692 + L1MEd LINE L1 4380 4884 -1245 354 296 103 13 chr6 26964796 26964953 -155450289 + MIR SINE MIR 21 191 -71 209 345 0 82 chr6 26965126 26965236 -155450006 - MIR SINE MIR -66 142 42 515 281 62 16 chr6 26965893 26966109 -155449133 - MIR SINE MIR -13 249 22 286 237 23 107 chr6 26966102 26966233 -155449009 + MIR SINE MIR 71 190 -72 * 207 0 0 0 chr6 26968049 26968072 -155447170 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 216 236 14 69 chr6 26968861 26968933 -155446309 - MER5A DNA MER1_type -78 111 44 355 259 71 0 chr6 26971184 26971296 -155443946 + MER5C DNA MER1_type 205 324 0 333 0 0 0 chr6 26971390 26971427 -155443815 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 1860 145 14 0 chr6 26971428 26971704 -155443538 - AluSx SINE Alu -32 280 1 21 0 0 0 chr6 26972912 26972933 -155442309 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 26973487 26973510 -155441732 + AT_rich Low_complexity Low_complexity 1 23 0 620 288 135 5 chr6 26976483 26976705 -155438537 - MIR SINE MIR -10 252 2 30 27 0 0 chr6 26978019 26978056 -155437186 + AT_rich Low_complexity Low_complexity 1 37 0 2325 87 0 3 chr6 26978254 26978554 -155436688 - AluSg SINE Alu -11 299 1 233 284 45 57 chr6 26979641 26979729 -155435513 - L2 LINE L2 0 3313 3227 427 261 4 108 chr6 26979903 26980171 -155435071 - MER112 DNA MER1_type -13 247 8 202 204 20 20 chr6 26980989 26981038 -155434204 + L2 LINE L2 3218 3266 -6 2235 102 14 0 chr6 26981572 26981866 -155433376 + AluSc SINE Alu 1 298 -11 588 327 203 10 chr6 26981866 26982729 -155432513 + L2 LINE L2 2260 3301 -12 247 285 70 57 chr6 26983014 26983172 -155432070 - MIR SINE MIR -82 180 21 21 36 0 0 chr6 26984038 26984066 -155431176 + AT_rich Low_complexity Low_complexity 1 28 0 2386 39 32 0 chr6 26985988 26986270 -155428972 - AluY SINE Alu -19 292 2 1550 251 85 86 chr6 26987166 26988354 -155426888 + L1MC4 LINE L1 6854 8040 -2 1921 155 0 29 chr6 26988419 26988735 -155426507 + AluJb SINE Alu 1 307 -5 390 227 11 11 chr6 26989003 26989091 -155426151 - L2 LINE L2 -1 3271 3184 189 0 0 0 chr6 26989598 26989619 -155425623 + (A)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr6 26989817 26989841 -155425401 + AT_rich Low_complexity Low_complexity 1 24 0 277 302 43 35 chr6 26990381 26990497 -155424745 + L2 LINE L2 3189 3305 -8 313 257 140 14 chr6 26990660 26990874 -155424368 - L1ME2 LINE L1 -212 5952 5712 405 255 217 25 chr6 26990996 26991153 -155424089 - MIR SINE MIR -28 234 48 22 56 0 0 chr6 26992094 26992130 -155423112 + AT_rich Low_complexity Low_complexity 1 36 0 52 69 0 0 chr6 26995075 26995176 -155420066 + AT_rich Low_complexity Low_complexity 1 101 0 352 329 77 43 chr6 26998013 26998363 -155416879 + L2 LINE L2 1722 2083 -1231 412 261 82 67 chr6 26998959 26999207 -155416035 + MER34 LTR ERV1 7 470 -237 250 352 28 0 chr6 26999435 26999543 -155415699 + L2 LINE L2 3199 3309 -4 1770 156 0 41 chr6 27000023 27000343 -155414899 - AluJo SINE Alu 0 312 6 1527 217 78 56 chr6 27000428 27000904 -155414338 - MER39 LTR ERV1 0 787 6 10243 60 9 69 chr6 27001551 27003026 -155412216 - SVA Other Other 0 1386 1 258 105 0 0 chr6 27003039 27003077 -155412165 + (AGGGGG)n Simple_repeat Simple_repeat 3 40 0 1438 212 76 9 chr6 27003922 27004238 -155411004 - MER2 DNA MER2_type 0 345 9 666 277 136 44 chr6 27004244 27004583 -155410659 - MLT1J2 LTR MaLR 0 450 81 514 355 197 11 chr6 27005054 27005496 -155409746 - L3 LINE CR1 -1 1576 1011 1845 174 3 0 chr6 27005496 27005795 -155409447 - AluJb SINE Alu -12 300 1 514 355 197 11 chr6 27005795 27005899 -155409343 - L3 LINE CR1 -566 1011 928 272 325 72 46 chr6 27005979 27006173 -155409069 - MLT1J LTR MaLR -308 203 5 300 264 86 88 chr6 27006362 27006851 -155408391 - L1P LINE L1 -2368 3778 3291 564 349 28 5 chr6 27007059 27007274 -155407968 - L3 LINE CR1 -1001 576 357 347 273 30 0 chr6 27007770 27007869 -155407373 + MIR3 SINE MIR 86 187 -21 197 33 33 0 chr6 27008043 27008073 -155407169 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 667 210 70 61 chr6 27009529 27009758 -155405484 - MLT1L LTR MaLR -47 568 338 1085 189 0 6 chr6 27010658 27010838 -155404404 + MER5A DNA MER1_type 11 189 0 232 401 54 14 chr6 27011820 27011967 -155403275 + L2 LINE L2 3119 3271 -1 24 0 0 0 chr6 27012179 27012203 -155403039 + AT_rich Low_complexity Low_complexity 1 24 0 463 227 132 56 chr6 27012402 27012623 -155402619 - HAL1 LINE L1 -10 2497 2294 1118 152 123 5 chr6 27012623 27012834 -155402408 - MER46A DNA MER2_type 0 236 1 463 227 132 56 chr6 27012834 27012850 -155402392 - HAL1 LINE L1 -213 2294 2281 291 28 0 0 chr6 27012850 27012886 -155402356 + (CA)n Simple_repeat Simple_repeat 2 37 0 463 227 132 56 chr6 27012886 27012951 -155402291 - HAL1 LINE L1 -226 2281 2171 1386 190 152 51 chr6 27012953 27013348 -155401894 - MSTB2 LTR MaLR 0 457 23 3084 219 81 45 chr6 27013356 27014261 -155400981 - HAL1 LINE L1 -337 2170 1219 1768 178 0 3 chr6 27014261 27014547 -155400695 - AluJb SINE Alu -27 285 1 3084 219 81 45 chr6 27014547 27014698 -155400544 - HAL1 LINE L1 -1288 1219 1075 1460 259 146 29 chr6 27014755 27015480 -155399762 - HAL1 LINE L1 -1688 819 10 1031 268 68 40 chr6 27015615 27016015 -155399227 - LTR38 LTR ERV1 -9 547 137 1148 201 136 13 chr6 27016784 27017093 -155398149 - L1MA4 LINE L1 -8 6292 5946 352 221 116 0 chr6 27019110 27019196 -155396046 - MER96 DNA MER1_type? -19 156 61 24 0 0 0 chr6 27020074 27020098 -155395144 + AT_rich Low_complexity Low_complexity 1 24 0 1697 160 0 41 chr6 27020098 27020391 -155394851 - AluJo SINE Alu -31 281 1 706 180 48 24 chr6 27022753 27022920 -155392322 + MER58A DNA MER1_type 45 215 -9 891 195 11 32 chr6 27023001 27023186 -155392056 + FRAM SINE Alu 1 174 -2 368 207 278 30 chr6 27023394 27023563 -155391679 - MIR SINE MIR -18 244 34 1639 159 97 3 chr6 27024189 27024498 -155390744 + MER44D DNA MER2_type 1 608 -1 1270 137 75 62 chr6 27024905 27025132 -155390110 + MER30 DNA MER1_type 1 230 0 2391 81 0 0 chr6 27025192 27025487 -155389755 + AluY SINE Alu 1 295 -16 207 100 0 0 chr6 27025614 27025644 -155389598 + (CATG)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr6 27028652 27028684 -155386558 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 27032267 27032291 -155382951 + AT_rich Low_complexity Low_complexity 1 24 0 1647 163 7 28 chr6 27032293 27032581 -155382661 + AluJo SINE Alu 1 282 -30 252 86 0 0 chr6 27032601 27032636 -155382606 + (CATA)n Simple_repeat Simple_repeat 1 35 0 353 194 0 0 chr6 27033865 27033934 -155381308 + Alu SINE Alu 243 298 -4 252 0 0 0 chr6 27035741 27035769 -155379473 + (T)n Simple_repeat Simple_repeat 1 28 0 927 253 82 31 chr6 27037801 27038192 -155377050 + LTR16B LTR ERVL 54 464 0 1727 128 16 8 chr6 27038229 27038487 -155376755 + AluSx SINE Alu 34 293 -19 1602 243 38 16 chr6 27041944 27042397 -155372845 + Charlie4a DNA MER1_type 42 504 -4 2512 214 24 20 chr6 27042800 27043337 -155371905 - MER74A LTR ERVL 0 558 20 1693 143 11 8 chr6 27043344 27043609 -155371633 + AluSx SINE Alu 34 299 -13 321 297 108 40 chr6 27044965 27045113 -155370129 - L2 LINE L2 -16 3297 3140 1590 252 59 12 chr6 27045217 27045642 -155369600 + LTR16A LTR ERVL 1 445 -5 230 225 0 0 chr6 27046074 27046114 -155369128 - L2 LINE L2 -10 3262 3223 670 268 153 5 chr6 27046552 27046761 -155368481 - MIR SINE MIR -19 243 4 411 264 115 35 chr6 27047954 27048128 -155367114 + MIR SINE MIR 75 262 0 854 232 89 4 chr6 27048177 27048423 -155366819 + MER20B DNA MER1_type 384 650 -133 2477 154 21 39 chr6 27048431 27048594 -155366648 - L1MB8 LINE L1 0 6178 6014 2307 97 3 0 chr6 27048594 27048894 -155366348 + AluSq SINE Alu 1 301 -12 2477 154 21 39 chr6 27048894 27049249 -155365993 - L1MB8 LINE L1 -164 6014 5669 2100 149 7 0 chr6 27049278 27049579 -155365663 + AluJb SINE Alu 1 303 -9 2295 116 0 0 chr6 27049622 27049932 -155365310 + AluSg SINE Alu 1 310 0 458 191 0 0 chr6 27049951 27050035 -155365207 + MER20B DNA MER1_type 699 782 -1 445 349 92 5 chr6 27050046 27050264 -155364978 + MIR SINE MIR 20 256 -6 24 0 0 0 chr6 27051096 27051120 -155364122 + AT_rich Low_complexity Low_complexity 1 24 0 321 250 0 12 chr6 27051471 27051555 -155363687 + MER58B DNA MER1_type 257 339 -2 21 71 0 0 chr6 27053193 27053235 -155362007 + AT_rich Low_complexity Low_complexity 1 42 0 444 237 18 9 chr6 27053364 27053478 -155361764 + MLT1G1 LTR MaLR 123 237 -312 1953 141 81 60 chr6 27053505 27053972 -155361270 - MER31A LTR ERV1 -8 477 1 575 256 175 4 chr6 27053972 27054218 -155361024 + MLT1G1 LTR MaLR 251 538 -57 2209 94 3 26 chr6 27055079 27055421 -155359821 - AluSx SINE Alu 0 312 1 709 251 39 21 chr6 27055450 27055729 -155359513 - L1ME1 LINE L1 -5 6161 5878 271 287 116 61 chr6 27056370 27056534 -155358708 + L3 LINE CR1 782 954 -623 353 303 171 31 chr6 27056855 27057142 -155358100 + L3 LINE CR1 1188 1514 -63 1604 204 38 46 chr6 27057338 27057731 -155357511 - MLT1B LTR MaLR 0 390 1 275 277 43 76 chr6 27059291 27059475 -155355767 + MER5B DNA MER1_type 1 178 0 517 151 29 7 chr6 27059990 27060129 -155355113 + GA-rich Low_complexity Low_complexity 3 144 0 3255 96 16 2 chr6 27060299 27060341 -155354901 - MLT2A2 LTR ERVL 0 453 413 369 0 0 0 chr6 27060341 27060382 -155354860 + (CA)n Simple_repeat Simple_repeat 2 42 0 3255 96 16 2 chr6 27060382 27060786 -155354456 - MLT2A2 LTR ERVL -40 413 1 1073 293 91 45 chr6 27061070 27062744 -155352498 + L1ME4a LINE L1 410 2195 -4115 956 261 80 25 chr6 27062772 27063495 -155351747 + L1ME4a LINE L1 2253 3015 -3114 494 285 156 8 chr6 27064193 27064551 -155350691 + L1ME4a LINE L1 5477 5887 -217 344 252 13 77 chr6 27064561 27064716 -155350526 + L1ME4a LINE L1 5940 6084 -20 258 319 57 19 chr6 27065383 27065490 -155349752 + MER5B DNA MER1_type 1 131 -58 350 277 93 34 chr6 27066007 27066328 -155348914 - L1ME4a LINE L1 -24 6097 5758 581 295 75 10 chr6 27066676 27066876 -155348366 - MIR SINE MIR -2 260 48 850 158 17 0 chr6 27066889 27067066 -155348176 - L1MC3 LINE L1 -146 7639 7460 533 288 45 30 chr6 27067120 27067318 -155347924 - MIR SINE MIR -52 210 10 287 269 228 12 chr6 27067514 27067685 -155347557 - L3 LINE CR1 -160 1417 1210 22 56 0 0 chr6 27068978 27069014 -155346228 + AT_rich Low_complexity Low_complexity 1 36 0 247 232 34 57 chr6 27070433 27070610 -155344632 + (TCTCTG)n Simple_repeat Simple_repeat 6 178 0 * 294 275 9 59 chr6 27070534 27070785 -155344457 + CT-rich Low_complexity Low_complexity 1 238 0 210 344 90 8 chr6 27071645 27071767 -155343475 - MER5A DNA MER1_type -9 180 49 239 236 85 57 chr6 27073305 27073411 -155341831 + MIR SINE MIR 36 144 -64 289 174 29 0 chr6 27073661 27073730 -155341512 + (TA)n Simple_repeat Simple_repeat 2 72 0 2326 101 0 0 chr6 27074011 27074342 -155340900 - AluY SINE Alu 0 335 5 203 139 70 23 chr6 27075468 27075511 -155339731 + MIR SINE MIR 106 150 -58 484 248 17 0 chr6 27075752 27075869 -155339373 - MER70B LTR ERVL -345 233 115 210 354 0 10 chr6 27076115 27076214 -155339028 + MIR SINE MIR 159 256 -6 320 320 52 0 chr6 27076356 27076453 -155338789 + L2 LINE L2 3144 3245 -27 1045 194 107 0 chr6 27076456 27076672 -155338570 - MER70B LTR ERVL -339 239 1 305 181 60 72 chr6 27078878 27078961 -155336281 + L2 LINE L2 3232 3313 0 270 200 18 0 chr6 27079394 27079449 -155335793 + MIR SINE MIR 82 137 -125 587 289 20 40 chr6 27079465 27079666 -155335576 - MIR SINE MIR -12 250 54 335 336 30 0 chr6 27079706 27079837 -155335405 + MIR SINE MIR 128 262 0 605 319 61 13 chr6 27080339 27080568 -155334674 + MIR SINE MIR 2 241 -21 279 212 94 12 chr6 27080588 27080673 -155334569 + MIR SINE MIR 171 262 0 291 256 23 53 chr6 27081289 27081422 -155333820 - MER102a DNA MER1_type -26 304 176 316 229 70 96 chr6 27081934 27082024 -155333218 + L1ME4a LINE L1 5532 5623 -498 243 0 0 0 chr6 27082024 27082051 -155333191 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 316 229 70 96 chr6 27082051 27082065 -155333177 + L1ME4a LINE L1 5623 5636 -485 1902 128 3 51 chr6 27082065 27082378 -155332864 + AluSq SINE Alu 1 298 -15 316 229 70 96 chr6 27082378 27082543 -155332699 + L1ME4a LINE L1 5636 5795 -326 322 203 38 13 chr6 27082543 27082622 -155332620 - L2 LINE L2 -2 3311 3231 461 199 195 21 chr6 27082629 27082870 -155332372 + L1ME4a LINE L1 5794 6076 -45 26 0 0 0 chr6 27082884 27082910 -155332332 + AT_rich Low_complexity Low_complexity 1 26 0 334 220 199 7 chr6 27083028 27083169 -155332073 + L1ME4a LINE L1 5954 6121 0 368 260 96 7 chr6 27083621 27083805 -155331437 - L1MEd LINE L1 -4591 1972 1622 21 0 0 0 chr6 27083905 27083926 -155331316 + AT_rich Low_complexity Low_complexity 1 21 0 414 295 72 58 chr6 27084559 27084837 -155330405 - L1MEd LINE L1 -5750 622 336 2581 37 0 0 chr6 27084837 27085134 -155330108 + AluY SINE Alu 1 297 -14 414 295 72 58 chr6 27085134 27085218 -155330024 - L1MEd LINE L1 -6036 336 255 180 267 188 10 chr6 27086097 27086198 -155329044 + L2 LINE L2 3195 3313 0 455 301 110 32 chr6 27086470 27086689 -155328553 + MIR SINE MIR 7 242 -20 193 318 40 63 chr6 27088054 27088180 -155327062 + L2 LINE L2 2966 3088 -184 967 252 198 49 chr6 27088224 27088930 -155326312 - L2 LINE L2 -1 3312 2486 231 336 112 0 chr6 27088947 27089054 -155326188 + L2 LINE L2 3122 3240 -32 2535 138 21 19 chr6 27089774 27090201 -155325041 - MSTA LTR MaLR 0 428 1 304 226 19 75 chr6 27091039 27091145 -155324097 + LTR4 LTR ERV1 18 117 -479 473 259 39 29 chr6 27091430 27091635 -155323607 + LTR4 LTR ERV1 390 596 0 1891 260 111 58 chr6 27091795 27092904 -155322338 + L2 LINE L2 2132 3312 -1 21 0 0 0 chr6 27093572 27093593 -155321649 + AT_rich Low_complexity Low_complexity 1 21 0 497 225 45 9 chr6 27094396 27094507 -155320735 - L2 LINE L2 -8 3305 3191 250 212 45 0 chr6 27094537 27094603 -155320639 + MIR SINE MIR 84 152 -110 195 268 80 36 chr6 27096002 27096114 -155319128 + MIR SINE MIR 90 206 -56 664 237 90 12 chr6 27097459 27097782 -155317460 + MLT1I LTR MaLR 1 392 -17 1926 254 77 16 chr6 27099511 27100120 -155315122 - MER20B DNA MER1_type -82 701 56 515 188 0 62 chr6 27100320 27100432 -155314810 + MER8 DNA MER2_type 1 105 -134 2024 174 79 55 chr6 27100487 27100520 -155314722 + MLT1D LTR MaLR 1 32 -473 1704 173 48 0 chr6 27100520 27100640 -155314602 + AluSx SINE Alu 1 114 -198 188 35 35 0 chr6 27100640 27100669 -155314573 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1704 173 48 0 chr6 27100669 27100837 -155314405 + AluSx SINE Alu 114 303 -9 2024 174 79 55 chr6 27100837 27101296 -155313946 + MLT1D LTR MaLR 32 505 0 23 33 0 0 chr6 27101650 27101680 -155313562 + AT_rich Low_complexity Low_complexity 1 30 0 5194 191 46 16 chr6 27101734 27103678 -155311564 - L1MB7 LINE L1 -19 6663 4660 1141 237 206 21 chr6 27103651 27104268 -155310974 - L1MB7 LINE L1 -3948 2698 1968 * 1226 153 0 5 chr6 27104286 27104476 -155310766 - L1MB7 LINE L1 -5581 961 773 852 173 71 56 chr6 27104469 27104527 -155310715 - L1MB7 LINE L1 -6330 212 156 * 2399 57 0 3 chr6 27104527 27104823 -155310419 + AluY SINE Alu 1 295 -16 852 173 71 56 chr6 27104823 27104961 -155310281 - L1MB7 LINE L1 -6386 156 13 887 242 36 52 chr6 27106155 27106407 -155308835 + MIR SINE MIR 2 249 -13 24 0 0 0 chr6 27106646 27106670 -155308572 + AT_rich Low_complexity Low_complexity 1 24 0 608 261 7 0 chr6 27109069 27109211 -155306031 - MER58A DNA MER1_type 0 143 1 238 330 92 9 chr6 27109443 27109552 -155305690 - L2 LINE L2 -5 3267 3150 646 246 85 16 chr6 27110059 27110307 -155304935 - MER21B LTR ERV1 -62 869 514 1798 223 41 27 chr6 27110953 27111195 -155304047 + L1M4 LINE L1 3902 4139 -2007 1681 219 63 16 chr6 27111195 27111639 -155303603 - LTR40c LTR ERVL 0 465 1 1798 223 41 27 chr6 27111639 27111952 -155303290 + L1M4 LINE L1 4139 4465 -1681 828 269 100 91 chr6 27112367 27113283 -155301959 - L2 LINE L2 -817 2497 1573 224 337 189 0 chr6 27113295 27113390 -155301852 + L2 LINE L2 3133 3245 -27 985 90 8 0 chr6 27113682 27113816 -155301426 + AluSp/q SINE Alu 179 313 0 2046 124 0 0 chr6 27113832 27114105 -155301137 + AluSx SINE Alu 1 273 -39 193 308 90 26 chr6 27115433 27115589 -155299653 + L2 LINE L2 2213 2378 -936 21 0 0 0 chr6 27116820 27116841 -155298401 + AT_rich Low_complexity Low_complexity 1 21 0 542 117 0 0 chr6 27116897 27116974 -155298268 - U13 snRNA snRNA -27 77 1 236 184 165 9 chr6 27117401 27117510 -155297732 + AluSc SINE Alu 6 131 -168 306 233 14 0 chr6 27118125 27118198 -155297044 + MER116 DNA Mariner 1 74 -6 2129 120 14 0 chr6 27118627 27118918 -155296324 - AluSx SINE Alu -15 297 3 2344 87 0 3 chr6 27119700 27120000 -155295242 - AluSg SINE Alu -11 299 1 228 239 0 0 chr6 27121180 27121226 -155294016 + GA-rich Low_complexity Low_complexity 2 47 0 343 246 0 0 chr6 27121593 27121654 -155293588 + G-rich Low_complexity Low_complexity 1 61 0 2892 127 87 30 chr6 27121957 27122254 -155292988 - Tigger1 DNA MER2_type 0 2418 2079 2329 91 3 0 chr6 27122254 27122550 -155292692 - AluSp SINE Alu -14 299 3 2892 127 87 30 chr6 27122550 27122756 -155292486 - Tigger1 DNA MER2_type -339 2079 1886 228 162 0 0 chr6 27122788 27122825 -155292417 - Tigger1 DNA MER2_type -520 1898 1862 2288 79 118 7 chr6 27122825 27123281 -155291961 - L1PA6 LINE L1 -3 6151 5645 503 115 83 10 chr6 27123562 27123658 -155291584 - AluY SINE Alu -207 104 2 794 186 90 6 chr6 27123662 27123839 -155291403 - L1M4 LINE L1 -582 5602 5411 2110 138 3 0 chr6 27124367 27124665 -155290577 + AluSx SINE Alu 1 299 -13 222 139 93 0 chr6 27125868 27125911 -155289331 - L2 LINE L2 0 3313 3267 2891 6 0 6 chr6 27176817 27177137 -155238105 - AluYb8 SINE Alu 0 318 1 322 106 0 0 chr6 27177282 27177329 -155237913 + L2 LINE L2 3267 3313 0 216 240 133 93 chr6 27178586 27178736 -155236506 + MER5A DNA MER1_type 34 189 0 324 93 19 0 chr6 27178809 27178863 -155236379 - L1PB2 LINE L1 -2 6149 6095 503 265 7 52 chr6 27178866 27178932 -155236310 - L2 LINE L2 -9 3263 3204 1725 208 43 41 chr6 27178932 27179398 -155235844 - MLT1C LTR MaLR 0 467 1 503 265 7 52 chr6 27179398 27179467 -155235775 - L2 LINE L2 -68 3204 3134 191 329 96 0 chr6 27181922 27181995 -155233247 + MIR SINE MIR 74 153 -109 1906 171 22 0 chr6 27182020 27182377 -155232865 + L1 LINE L1 4647 5011 -1135 14994 82 30 6 chr6 27182478 27184752 -155230490 - L1P LINE L1 -2473 3673 1347 1808 156 44 3 chr6 27184852 27185147 -155230095 - AluJo SINE Alu -5 307 1 2288 183 53 11 chr6 27185273 27185742 -155229500 + MLT1D LTR MaLR 4 492 -13 287 292 125 30 chr6 27186197 27186365 -155228877 - MIR SINE MIR -59 203 20 2020 120 3 55 chr6 27187121 27187446 -155227796 + AluSx SINE Alu 1 308 -4 206 286 36 0 chr6 27187501 27187557 -155227685 - MIR3 SINE MIR -40 168 111 201 365 58 19 chr6 27187918 27188074 -155227168 - MIR SINE MIR -81 181 20 317 318 139 20 chr6 27189020 27189171 -155226071 + MIR3 SINE MIR 17 185 -23 186 43 0 0 chr6 27189498 27189521 -155225721 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2111 130 3 0 chr6 27190153 27190454 -155224788 - AluSx SINE Alu -10 302 1 368 307 64 0 chr6 27191059 27191199 -155224043 - MIR SINE MIR -58 204 56 2271 81 7 7 chr6 27191710 27192007 -155223235 - AluSc SINE Alu -12 297 1 366 330 45 56 chr6 27192025 27192292 -155222950 - L3 LINE CR1 -59 1518 1255 2303 116 0 0 chr6 27192414 27192708 -155222534 - AluSx SINE Alu -14 298 5 1122 231 9 69 chr6 27193797 27194028 -155221214 + LTR37A LTR ERV1 18 214 -212 1955 123 33 0 chr6 27194028 27194325 -155220917 - AluSx SINE Alu 0 306 1 1122 231 9 69 chr6 27194325 27194525 -155220717 + LTR37A LTR ERV1 214 424 -2 240 171 29 29 chr6 27195160 27195230 -155220012 + T-rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr6 27195282 27195311 -155219931 + AT_rich Low_complexity Low_complexity 1 29 0 801 268 9 40 chr6 27196656 27196884 -155218358 - MIR SINE MIR -40 222 2 255 350 92 31 chr6 27197122 27197448 -155217794 + L2 LINE L2 2632 2977 -337 2497 49 23 0 chr6 27197512 27197816 -155217426 - AluY SINE Alu 0 311 1 21 0 0 0 chr6 27197881 27197902 -155217340 + AT_rich Low_complexity Low_complexity 1 21 0 663 221 33 11 chr6 27197909 27198090 -155217152 - MER112 DNA MER1_type -11 249 65 256 296 0 0 chr6 27198238 27198292 -155216950 + L2 LINE L2 3133 3186 -86 292 341 92 54 chr6 27199139 27199400 -155215842 + L2 LINE L2 2946 3216 -56 686 229 151 0 chr6 27200636 27200815 -155214427 - MIR SINE MIR -54 208 3 2088 122 7 14 chr6 27200861 27201155 -155214087 + AluSg SINE Alu 1 292 -18 405 0 0 0 chr6 27202063 27202108 -155213134 + (TA)n Simple_repeat Simple_repeat 2 46 0 800 265 59 0 chr6 27202111 27202315 -155212927 - MIR SINE MIR -26 236 21 226 259 17 17 chr6 27202688 27202746 -155212496 - L2 LINE L2 -20 3293 3236 185 386 144 25 chr6 27202787 27203023 -155212219 - L2 LINE L2 -195 3077 2814 186 43 0 0 chr6 27203457 27203480 -155211762 + (CAA)n Simple_repeat Simple_repeat 2 24 0 646 296 6 11 chr6 27204031 27204210 -155211032 - MER5B DNA MER1_type 0 178 1 2098 249 141 24 chr6 27205390 27206161 -155209081 + L1ME3A LINE L1 5290 6143 -27 2470 75 0 3 chr6 27206274 27206580 -155208662 - AluY SINE Alu -6 305 1 290 290 46 8 chr6 27206976 27207107 -155208135 - MLT1L LTR MaLR -4 611 476 363 265 44 52 chr6 27207251 27207387 -155207855 - MLT1L LTR MaLR -358 257 123 281 234 94 39 chr6 27207490 27207618 -155207624 + L2 LINE L2 3073 3207 -106 285 29 0 0 chr6 27207759 27207793 -155207449 + (CA)n Simple_repeat Simple_repeat 1 34 0 550 286 70 24 chr6 27207875 27208162 -155207080 - HERVL LTR ERVL -369 5285 4986 1058 140 6 0 chr6 27208518 27208675 -155206567 + AluSg/x SINE Alu 118 275 -35 1869 228 16 53 chr6 27208708 27209103 -155206139 + MLT1B-int LTR MaLR 268 730 -641 1778 171 3 10 chr6 27209103 27209412 -155205830 - AluJb SINE Alu -5 307 1 1869 228 16 53 chr6 27209412 27209563 -155205679 + MLT1B-int LTR MaLR 730 885 -486 1453 140 16 102 chr6 27209692 27210006 -155205236 - AluY SINE Alu -14 297 11 1997 188 38 40 chr6 27210230 27210587 -155204655 + MLT1B-int LTR MaLR 1316 1673 -62 2319 84 0 3 chr6 27210587 27210884 -155204358 - AluY SINE Alu -15 296 1 1997 188 38 40 chr6 27210884 27210947 -155204295 + MLT1B-int LTR MaLR 1673 1735 0 1370 169 65 125 chr6 27210947 27211362 -155203880 + MLT1B LTR MaLR 1 390 0 1806 149 15 0 chr6 27211680 27211949 -155203293 + AluSx SINE Alu 1 273 -39 27 0 0 0 chr6 27212212 27212239 -155203003 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr6 27212281 27212305 -155202937 + AT_rich Low_complexity Low_complexity 1 24 0 915 112 0 8 chr6 27213118 27213243 -155201999 - AluSc SINE Alu -82 227 104 2015 113 0 38 chr6 27213245 27213537 -155201705 - AluSx SINE Alu -21 291 11 471 234 48 35 chr6 27214294 27214439 -155200803 + MIR SINE MIR 102 248 -14 2103 119 0 13 chr6 27215204 27215516 -155199726 + AluSx SINE Alu 1 308 -4 1039 198 90 12 chr6 27215516 27215859 -155199383 - Charlie5 DNA MER1_type -9 2603 2234 360 231 50 33 chr6 27215862 27215899 -155199343 - MER3 DNA MER1_type 6 168 133 1922 130 0 63 chr6 27215899 27216215 -155199027 + AluSx SINE Alu 1 296 -16 360 231 50 33 chr6 27216215 27216298 -155198944 - MER3 DNA MER1_type -29 133 46 1710 169 13 13 chr6 27218534 27218835 -155196407 - AluJb SINE Alu -11 301 1 222 37 0 0 chr6 27219017 27219044 -155196198 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 2021 89 44 0 chr6 27219065 27219336 -155195906 - AluSp SINE Alu -30 283 1 335 272 72 16 chr6 27219623 27219748 -155195494 - LTR24B LTR ERV1 -45 531 400 2614 115 10 30 chr6 27219753 27220152 -155195090 + LTR22A LTR ERVK 68 458 0 9306 139 3 6 chr6 27220209 27221597 -155193645 + HERVK22 LTR ERVK 81 1464 -5373 4921 121 13 3 chr6 27221607 27222307 -155192935 + HERVK22 LTR ERVK 4587 5293 -1544 1650 145 4 0 chr6 27222301 27222543 -155192699 + HERVK22 LTR ERVK 6595 6837 0 * 3075 135 13 2 chr6 27222543 27222996 -155192246 + LTR22A LTR ERVK 1 458 0 2130 84 40 7 chr6 27223048 27223347 -155191895 + AluSq SINE Alu 1 309 -4 497 253 108 82 chr6 27224194 27224609 -155190633 - MER101 LTR ERV1 -36 438 13 1151 124 10 57 chr6 27226590 27226799 -155188443 + AluSx SINE Alu 15 213 -99 600 130 65 19 chr6 27226899 27227007 -155188235 + FRAM SINE Alu 63 175 -1 857 280 40 20 chr6 27227023 27227377 -155187865 + L1MC4a LINE L1 5572 5932 -1876 268 279 15 29 chr6 27227384 27227520 -155187722 + L1MC4a LINE L1 6131 6264 -1544 318 325 70 22 chr6 27227590 27227861 -155187381 + L1M4 LINE L1 3547 3830 -2316 181 270 75 80 chr6 27228114 27228314 -155186928 - L2 LINE L2 -223 3049 2851 486 185 0 93 chr6 27228600 27228708 -155186534 - MER63C DNA MER1_type 0 932 835 188 83 0 28 chr6 27228708 27228744 -155186498 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 2130 206 43 18 chr6 27228763 27229254 -155185988 - MER63C DNA MER1_type -189 741 239 280 238 16 0 chr6 27229220 27229283 -155185959 + MER63 DNA MER1_type 463 526 -534 * 280 257 43 0 chr6 27229535 27229605 -155185637 - MER63 DNA MER1_type -856 74 2 630 271 6 34 chr6 27230903 27231080 -155184162 + MLT1F LTR MaLR 1 172 -370 1615 178 76 54 chr6 27231730 27232084 -155183158 + MLT1A1 LTR MaLR 2 363 -2 600 252 128 4 chr6 27232344 27232570 -155182672 + L1MEd LINE L1 557 810 -5309 4196 186 21 48 chr6 27232662 27233658 -155181584 - LTR5 LTR ERVK 0 969 1 302 252 153 0 chr6 27233761 27233872 -155181370 - MLT1J LTR MaLR -52 459 332 753 292 102 22 chr6 27233925 27234240 -155181002 + MLT1I LTR MaLR 70 409 0 254 95 24 0 chr6 27234813 27234855 -155180387 + (GA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 27234983 27235004 -155180238 + AT_rich Low_complexity Low_complexity 1 21 0 1252 254 47 27 chr6 27235586 27235924 -155179318 + MLT1I LTR MaLR 63 407 -2 3666 141 83 23 chr6 27236288 27236850 -155178392 - Tigger3(Golem) DNA MER2_type -4 3024 2411 2603 58 0 0 chr6 27236850 27237159 -155178083 + AluY SINE Alu 1 309 -2 3666 141 83 23 chr6 27237159 27237292 -155177950 - Tigger3(Golem) DNA MER2_type -617 2411 2287 1486 308 186 17 chr6 27237371 27238417 -155176825 - L2 LINE L2 -338 2976 1754 411 68 0 0 chr6 27239204 27239263 -155175979 + (CA)n Simple_repeat Simple_repeat 2 60 0 917 294 182 21 chr6 27239843 27240552 -155174690 + L2 LINE L2 2223 3038 -275 5456 194 6 63 chr6 27242666 27243796 -155171446 - L1MEc LINE L1 -2691 3438 2356 416 92 0 0 chr6 27243796 27243861 -155171381 + Alu SINE Alu 245 309 -1 5456 194 6 63 chr6 27243861 27244021 -155171221 - L1MEc LINE L1 -3773 2356 2188 942 279 74 40 chr6 27244648 27245242 -155170000 - L1MEc LINE L1 -4868 1251 638 348 209 133 0 chr6 27245645 27245750 -155169492 - L1MEc LINE L1 -5976 143 25 313 378 14 62 chr6 27245820 27246029 -155169213 - MIR3 SINE MIR -6 202 4 364 247 12 12 chr6 27247153 27247234 -155168008 + MIR SINE MIR 2 82 -180 325 216 8 72 chr6 27248051 27248176 -155167066 - LTR33A LTR ERVL 0 523 407 644 298 19 19 chr6 27249426 27249634 -155165608 - MIR SINE MIR -4 258 51 76 78 0 0 chr6 27250237 27250404 -155164838 + AT_rich Low_complexity Low_complexity 1 167 0 2831 156 48 91 chr6 27250547 27251292 -155163950 + L1MC3 LINE L1 7065 7777 -8 486 269 53 41 chr6 27251565 27251736 -155163506 - MIR SINE MIR -57 205 33 277 319 0 50 chr6 27252716 27252835 -155162407 + L2 LINE L2 2393 2505 -809 239 234 0 0 chr6 27253443 27253490 -155161752 - L2 LINE L2 0 3313 3267 311 154 0 0 chr6 27253514 27253566 -155161676 + Alu SINE Alu 1 52 -251 1312 168 0 0 chr6 27253566 27253768 -155161474 + AluSg/x SINE Alu 109 310 0 672 298 92 5 chr6 27254811 27255029 -155160213 - MIR SINE MIR -17 245 9 2227 132 0 0 chr6 27255472 27255775 -155159467 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr6 27255808 27255837 -155159405 + AT_rich Low_complexity Low_complexity 1 29 0 260 83 0 0 chr6 27255851 27255887 -155159355 - MADE1 DNA Mariner -44 36 1 296 324 93 29 chr6 27256492 27256631 -155158611 + L2 LINE L2 3121 3268 -4 285 162 57 19 chr6 27257037 27257115 -155158127 - MLT1F LTR MaLR -26 523 438 245 281 116 71 chr6 27257096 27257320 -155157922 - MLT1F LTR MaLR -231 318 85 * 338 171 66 0 chr6 27258366 27258442 -155156800 - L1ME3A LINE L1 -8 6162 6082 269 282 117 55 chr6 27258937 27259100 -155156142 + MIR3 SINE MIR 8 180 -28 399 303 79 63 chr6 27259185 27259228 -155156014 - L1MC4a LINE L1 -1664 6144 6103 1991 143 0 7 chr6 27259228 27259528 -155155714 + AluSq SINE Alu 1 298 -15 399 303 79 63 chr6 27259528 27259609 -155155633 - L1MC4a LINE L1 -1705 6103 6025 1918 164 27 0 chr6 27259609 27259908 -155155334 - AluJb SINE Alu -5 307 1 399 303 79 63 chr6 27259908 27260099 -155155143 - L1MC4a LINE L1 -1783 6025 5823 996 256 92 48 chr6 27260106 27260564 -155154678 - L1MC4a LINE L1 -691 5473 5266 399 21 0 0 chr6 27261745 27261793 -155153449 + (CAA)n Simple_repeat Simple_repeat 2 49 0 703 331 100 46 chr6 27262710 27263169 -155152073 - L2 LINE L2 0 3313 2830 237 370 58 23 chr6 27264533 27264706 -155150536 - L2 LINE L2 -215 3098 2920 709 99 16 8 chr6 27265355 27265476 -155149766 + (GAAA)n Simple_repeat Simple_repeat 4 125 0 1705 190 84 20 chr6 27265659 27266065 -155149177 - MSTB1 LTR MaLR 0 432 1 208 139 0 0 chr6 27267751 27267787 -155147455 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2343 150 20 12 chr6 27268463 27268869 -155146373 - MSTB LTR MaLR -16 410 2 1666 217 28 0 chr6 27269010 27269434 -155145808 + L1MB7 LINE L1 4057 4492 -1654 2891 205 31 16 chr6 27269469 27270486 -155144756 + L1MB7 LINE L1 4963 5986 -198 306 0 0 0 chr6 27271222 27271256 -155143986 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 789 142 8 30 chr6 27271386 27271520 -155143722 + AluJo SINE Alu 1 131 -171 3149 145 41 46 chr6 27271626 27272232 -155143010 + LTR26 LTR ERV1 1 603 0 2672 225 237 19 chr6 27272996 27273149 -155142093 + L1MC4 LINE L1 6459 6577 -1465 276 111 0 0 chr6 27273149 27273194 -155142048 + (TAGG)n Simple_repeat Simple_repeat 2 46 0 2672 225 237 19 chr6 27273194 27274225 -155141017 + L1MC4 LINE L1 6577 7901 -141 340 305 80 31 chr6 27274706 27274932 -155140310 + L1M4 LINE L1 3792 4028 -2118 1485 156 11 94 chr6 27276175 27276527 -155138715 + MER101 LTR ERV1 2 324 -150 635 107 0 0 chr6 27276533 27276617 -155138625 + AluS SINE Alu 8 91 -221 509 149 11 0 chr6 27276726 27276813 -155138429 + MER101 LTR ERV1 281 368 -106 898 342 77 24 chr6 27276835 27277417 -155137825 + L2 LINE L2 2364 2976 -338 273 309 115 23 chr6 27277620 27277837 -155137405 + L2 LINE L2 3033 3269 -44 757 200 41 0 chr6 27277892 27278062 -155137180 + Charlie4 DNA MER1_type 40 216 -1745 * 1849 200 60 14 chr6 27278054 27278500 -155136742 + MER101 LTR ERV1 6 472 -2 266 198 129 0 chr6 27278503 27278604 -155136638 + Charlie4 DNA MER1_type 1754 1867 -94 997 184 0 13 chr6 27280637 27280795 -155134447 + AluJo SINE Alu 134 289 -23 22 0 0 0 chr6 27280867 27280889 -155134353 + AT_rich Low_complexity Low_complexity 1 22 0 310 292 28 0 chr6 27280889 27281033 -155134209 - L1M4 LINE L1 -1847 4299 4152 416 341 154 6 chr6 27281087 27281315 -155133927 + L2 LINE L2 1447 1640 -1674 194 0 39 0 chr6 27281315 27281341 -155133901 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 416 341 154 6 chr6 27281341 27281449 -155133793 + L2 LINE L2 1640 1833 -1481 871 239 59 63 chr6 27281740 27281791 -155133451 - L1MC5 LINE L1 -431 7530 7480 1831 105 20 0 chr6 27281791 27282038 -155133204 - AluSg SINE Alu -18 292 41 871 239 59 63 chr6 27282038 27282463 -155132779 - L1MC5 LINE L1 -481 7480 7056 380 279 184 35 chr6 27282467 27282891 -155132351 + L2 LINE L2 1825 2409 -905 392 321 48 36 chr6 27284315 27284673 -155130569 - L1MEd LINE L1 -5757 362 1 904 208 80 9 chr6 27286250 27286476 -155128766 + ORSL DNA AcHobo 13 254 -21 531 247 55 97 chr6 27286673 27287075 -155128167 - L1MDa LINE L1 -4506 2034 1651 2482 60 30 0 chr6 27287118 27287420 -155127822 - AluY SINE Alu 0 311 1 238 293 158 43 chr6 27287767 27287931 -155127311 + MIR SINE MIR 20 202 -60 583 317 66 21 chr6 27287962 27288205 -155127037 - MIR SINE MIR -6 256 3 8420 202 34 19 chr6 27288375 27290070 -155125172 + L1MA8 LINE L1 1787 3531 -2615 189 0 0 0 chr6 27290070 27290091 -155125151 + (CAA)n Simple_repeat Simple_repeat 1 21 0 8420 202 34 19 chr6 27290091 27290768 -155124474 + L1MA8 LINE L1 3531 4197 -1949 4091 138 10 15 chr6 27290745 27291644 -155123598 + L1PB3 LINE L1 5024 5917 -237 * 5031 102 5 12 chr6 27291653 27292429 -155122813 - L1PB1 LINE L1 -5 6146 5376 1480 144 8 16 chr6 27292431 27292687 -155122555 + L1PB3 LINE L1 5899 6152 -2 4783 153 24 6 chr6 27292704 27293578 -155121664 + L1PB4 LINE L1 5259 6148 -8 5633 137 35 7 chr6 27293683 27295562 -155119680 + L1MA8 LINE L1 4364 6289 -2 198 0 0 0 chr6 27297744 27297766 -155117476 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2929 85 2 21 chr6 27297771 27298207 -155117035 - L1PA13 LINE L1 -20 6143 5716 671 199 35 14 chr6 27298394 27298535 -155116707 - L2 LINE L2 -3 3310 3167 314 252 79 47 chr6 27298534 27298661 -155116581 - MIR SINE MIR -65 197 67 * 741 196 27 45 chr6 27298726 27298885 -155116357 + L1MCa LINE L1 1042 1202 -5224 1923 124 0 11 chr6 27298885 27299167 -155116075 + AluSx SINE Alu 1 279 -33 399 21 0 0 chr6 27299167 27299215 -155116027 + (CA)n Simple_repeat Simple_repeat 1 48 0 741 196 27 45 chr6 27299215 27299278 -155115964 + L1MCa LINE L1 1200 1261 -5165 402 162 0 0 chr6 27299318 27299440 -155115802 + GA-rich Low_complexity Low_complexity 1 122 0 455 188 75 0 chr6 27299440 27299573 -155115669 + L1MCa LINE L1 1267 1409 -5017 248 213 33 0 chr6 27299590 27299651 -155115591 + LTR36 LTR ERV1 1 63 -548 1093 211 74 130 chr6 27299677 27300275 -155114967 + LTR36 LTR ERV1 48 611 0 230 121 155 0 chr6 27300275 27300333 -155114909 + L1MCa LINE L1 1432 1498 -4928 211 336 82 9 chr6 27300782 27300892 -155114350 - L2 LINE L2 -1407 1907 1790 187 256 56 44 chr6 27300917 27301007 -155114235 - L2 LINE L2 -1922 1392 1302 2390 90 0 3 chr6 27301032 27301332 -155113910 - AluSq SINE Alu -14 299 1 408 250 137 68 chr6 27301845 27302093 -155113149 - L3 LINE CR1 -174 1403 1139 790 333 61 37 chr6 27302194 27302654 -155112588 + LTR33 LTR ERVL 1 471 -50 266 269 103 0 chr6 27302660 27302738 -155112504 + MIR SINE MIR 78 163 -99 262 257 124 0 chr6 27302860 27302973 -155112269 + MER46C DNA MER2_type 167 293 -45 185 398 32 0 chr6 27303022 27303115 -155112127 + MIR SINE MIR 158 253 -9 2481 37 3 59 chr6 27304782 27305104 -155110138 + AluY SINE Alu 1 304 -7 200 35 35 0 chr6 27305661 27305690 -155109552 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3039 217 70 28 chr6 27307052 27307986 -155107256 - L1ME1 LINE L1 -76 6370 5400 518 191 88 41 chr6 27307995 27308142 -155107100 - L1M4 LINE L1 -1286 5140 4987 871 229 66 4 chr6 27308142 27308400 -155106842 + L1M4 LINE L1 5131 5404 -1022 406 200 10 0 chr6 27308397 27308497 -155106745 + L1ME2 LINE L1 1813 1913 -4513 * 31 44 0 0 chr6 27308574 27308619 -155106623 + AT_rich Low_complexity Low_complexity 1 45 0 873 254 80 48 chr6 27308635 27309013 -155106229 + L1ME2 LINE L1 2044 2392 -4034 * 1358 207 20 23 chr6 27309006 27309455 -155105787 - L1ME1 LINE L1 -3614 2812 2367 2253 214 56 19 chr6 27309565 27310247 -155104995 - L1ME1 LINE L1 -4764 1662 956 21 0 0 0 chr6 27310912 27310933 -155104309 + AT_rich Low_complexity Low_complexity 1 21 0 437 219 110 32 chr6 27311271 27311426 -155103816 + L1ME2 LINE L1 5028 5194 -1232 819 224 103 29 chr6 27311435 27311716 -155103526 + L1ME2 LINE L1 5931 6232 -212 1417 163 36 42 chr6 27311716 27312022 -155103220 - MLT1E3 LTR MaLR -320 304 1 1022 228 43 120 chr6 27312022 27312465 -155102777 - MLT1E3-int LTR MaLR 0 1371 963 280 170 0 0 chr6 27312510 27312557 -155102685 - MLT1E3 LTR MaLR -577 47 1 21 36 0 0 chr6 27312588 27312616 -155102626 + AT_rich Low_complexity Low_complexity 1 28 0 233 305 15 66 chr6 27312618 27312815 -155102427 - L1 LINE L1 -2229 3917 3731 440 273 32 27 chr6 27312929 27313116 -155102126 + L1MC4a LINE L1 5695 5882 -1926 300 333 86 74 chr6 27313180 27313613 -155101629 + L1MEd LINE L1 66 503 -5616 376 273 252 0 chr6 27313823 27314061 -155101181 + L1MEd LINE L1 2860 3157 -2972 793 255 109 4 chr6 27315017 27315264 -155099978 + L1MCa LINE L1 1693 1965 -4461 278 207 24 24 chr6 27315633 27315715 -155099527 + (CATA)n Simple_repeat Simple_repeat 2 83 0 395 148 50 10 chr6 27316610 27316711 -155098531 + CT-rich Low_complexity Low_complexity 2 106 0 1409 205 52 0 chr6 27316907 27317175 -155098067 - AluJo SINE Alu -30 282 1 209 256 23 0 chr6 27317319 27317362 -155097880 + L2 LINE L2 3210 3253 -19 497 286 47 76 chr6 27317788 27318410 -155096832 - L1MC5 LINE L1 -44 7917 7314 261 235 84 94 chr6 27318559 27318641 -155096601 - L1MC4 LINE L1 -733 7228 7147 2543 56 0 0 chr6 27318641 27318943 -155096299 + AluY SINE Alu 1 302 -9 261 235 84 94 chr6 27318943 27319506 -155095736 - L1MC4 LINE L1 -814 7147 6612 467 321 24 45 chr6 27319713 27320003 -155095239 - LTR16C LTR ERVL -15 476 193 1921 143 155 41 chr6 27320003 27320046 -155095196 - LTR46 LTR ERV1 0 460 423 311 0 26 0 chr6 27320046 27320085 -155095157 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 320 0 25 0 chr6 27320084 27320124 -155095118 + (GA)n Simple_repeat Simple_repeat 2 42 0 1921 143 155 41 chr6 27320085 27320493 -155094749 - LTR46 LTR ERV1 -37 423 1 2181 115 0 3 chr6 27320493 27320806 -155094436 - LTR46-int LTR ERV1 0 6985 6674 432 284 57 60 chr6 27320908 27321157 -155094085 - HERV17 LTR ERV1 -446 8180 7014 * 9749 123 7 9 chr6 27321132 27322641 -155092601 - HERV17 LTR ERV1 -309 6676 5171 1172 334 59 10 chr6 27322694 27323377 -155091865 - HERV16 LTR ERVL -2023 3002 2296 384 271 100 56 chr6 27324321 27324728 -155090514 - LTR16C LTR ERVL 0 457 33 815 292 105 45 chr6 27325382 27325735 -155089507 + MER69 DNA AcHobo 35 408 -818 469 225 9 0 chr6 27325748 27325859 -155089383 + MER69 DNA AcHobo 1793 1904 -622 253 358 68 54 chr6 27326619 27327169 -155088073 + L2 LINE L2 1728 2298 -1016 1814 195 96 25 chr6 27327169 27327605 -155087637 + MLT1C LTR MaLR 1 467 0 253 358 68 54 chr6 27327605 27327961 -155087281 + L2 LINE L2 2298 2647 -667 605 279 191 16 chr6 27328688 27329122 -155086120 - LTR33 LTR ERVL -11 510 1 411 203 95 6 chr6 27330317 27330475 -155084767 + MER113 DNA MER1_type? 68 239 -282 1104 204 113 6 chr6 27330488 27330807 -155084435 + L1ME3 LINE L1 5691 6043 -119 2142 82 3 14 chr6 27330808 27331115 -155084127 - AluSc SINE Alu 0 304 1 5042 126 21 1 chr6 27331140 27331931 -155083311 - L1PA14 LINE L1 -17 6144 5338 22 0 0 0 chr6 27331931 27331953 -155083289 + AT_rich Low_complexity Low_complexity 1 22 0 4280 103 2 5 chr6 27331953 27332573 -155082669 - L1PB1 LINE L1 0 6151 5534 752 94 0 0 chr6 27332590 27332696 -155082546 - L1PB1 LINE L1 -680 5471 5366 2202 206 17 2 chr6 27332698 27333175 -155082067 + L1PB1 LINE L1 4885 5368 -778 503 164 77 0 chr6 27333166 27333270 -155081972 - L1PA14 LINE L1 -805 5369 5258 * 21 0 0 0 chr6 27333768 27333789 -155081453 + AT_rich Low_complexity Low_complexity 1 21 0 2825 250 125 76 chr6 27335280 27337615 -155077627 - L1MEc LINE L1 -738 5573 3355 2468 61 0 10 chr6 27337615 27337926 -155077316 - AluY SINE Alu -3 308 1 2825 250 125 76 chr6 27337926 27338671 -155076571 - L1MEc LINE L1 -2956 3355 513 247 296 14 14 chr6 27338697 27338768 -155076474 - L2 LINE L2 -77 3195 3125 290 205 4 129 chr6 27340232 27340368 -155074874 - L1ME LINE L1 -459 5662 5539 1514 209 7 29 chr6 27340439 27340746 -155074496 - AluJo SINE Alu -12 300 1 2264 100 0 3 chr6 27340774 27341074 -155074168 + AluSg SINE Alu 1 299 -11 1607 190 3 20 chr6 27341110 27341410 -155073832 + AluJo SINE Alu 1 295 -17 405 274 92 30 chr6 27341436 27341773 -155073469 - L1ME LINE L1 -752 5394 5061 301 330 39 0 chr6 27341834 27341937 -155073305 - MIR SINE MIR -123 139 33 233 333 32 63 chr6 27341972 27342224 -155073018 + L2 LINE L2 1442 1685 -1629 897 110 0 24 chr6 27342231 27342358 -155072884 - AluSg/x SINE Alu -22 290 167 185 0 40 0 chr6 27342386 27342411 -155072831 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 860 325 87 15 chr6 27342423 27342884 -155072358 + L2 LINE L2 1729 2222 -1092 649 230 97 0 chr6 27343533 27343698 -155071544 - MER63A DNA MER1_type -29 181 1 353 268 0 10 chr6 27344242 27344339 -155070903 - L1ME3A LINE L1 -284 5886 5791 253 224 13 26 chr6 27344988 27345064 -155070178 - L1MEd LINE L1 -5025 1094 1020 434 246 35 12 chr6 27346953 27347124 -155068118 + (TA)n Simple_repeat Simple_repeat 2 176 0 2719 272 150 19 chr6 27348090 27349270 -155065972 - L2 LINE L2 -55 3258 1942 389 127 84 0 chr6 27349275 27349346 -155065896 - MIR SINE MIR -77 185 109 187 340 50 10 chr6 27349789 27349889 -155065353 + MIR SINE MIR 138 241 -21 2172 254 31 20 chr6 27350219 27350806 -155064436 + MLT1E LTR MaLR 1 593 0 865 269 174 56 chr6 27351206 27351638 -155063604 + L2 LINE L2 2320 2802 -512 428 310 115 15 chr6 27352852 27353052 -155062190 + MIR SINE MIR 18 237 -25 2079 139 6 3 chr6 27353723 27354060 -155061182 - THE1B LTR MaLR -26 338 1 1433 204 3 19 chr6 27354060 27354378 -155060864 - L1ME1 LINE L1 -251 5915 5603 5367 24 3 3 chr6 27355232 27355863 -155059379 + L1PA4 LINE L1 5525 6155 0 1455 247 21 21 chr6 27356196 27356617 -155058625 - MER63 DNA MER1_type 0 1061 641 204 111 0 0 chr6 27356640 27356676 -155058566 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 225 0 56 chr6 27356676 27356765 -155058477 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 257 89 22 0 chr6 27356772 27356817 -155058425 + (TA)n Simple_repeat Simple_repeat 1 46 0 245 299 35 46 chr6 27358014 27358101 -155057141 - MIR SINE MIR -163 99 14 225 0 0 0 chr6 27358952 27358977 -155056265 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 1588 173 29 32 chr6 27360301 27360614 -155054628 + AluJo SINE Alu 1 312 0 22 35 0 0 chr6 27361916 27361945 -155053297 + AT_rich Low_complexity Low_complexity 1 29 0 598 297 99 33 chr6 27362028 27362634 -155052608 + L1M4 LINE L1 3964 4609 -1537 699 240 173 14 chr6 27362762 27362970 -155052272 - MIR SINE MIR -16 246 6 558 159 25 13 chr6 27363109 27363266 -155051976 + CT-rich Low_complexity Low_complexity 4 162 0 342 211 0 131 chr6 27364626 27364801 -155050441 - MER112 DNA MER1_type -101 159 8 371 61 0 0 chr6 27365785 27365834 -155049408 - MADE1 DNA Mariner 0 80 32 318 48 0 0 chr6 27365944 27365986 -155049256 - MADE1 DNA Mariner -38 42 1 252 0 0 0 chr6 27366673 27366701 -155048541 + (CA)n Simple_repeat Simple_repeat 2 29 0 2172 143 35 76 chr6 27367309 27367820 -155047422 + L1MA8 LINE L1 5800 6289 -2 21 0 0 0 chr6 27369001 27369022 -155046220 + AT_rich Low_complexity Low_complexity 1 21 0 642 85 0 21 chr6 27370292 27370386 -155044856 - THE1B LTR MaLR 0 364 273 1489 157 30 8 chr6 27370495 27370763 -155044479 - THE1B LTR MaLR -90 274 1 318 281 130 70 chr6 27370935 27371380 -155043862 - L1 LINE L1 -1472 4674 4203 1583 184 47 44 chr6 27371485 27371849 -155043393 - MLT1A1 LTR MaLR 0 365 1 608 278 28 84 chr6 27371949 27372233 -155043009 - REP3 LTR ERV -170 392 125 30 27 0 0 chr6 27372233 27372270 -155042972 + AT_rich Low_complexity Low_complexity 1 37 0 431 254 33 8 chr6 27372294 27372416 -155042826 - REP3 LTR ERV -437 125 1 21 36 0 0 chr6 27372589 27372617 -155042625 + AT_rich Low_complexity Low_complexity 1 28 0 388 252 65 7 chr6 27372701 27372856 -155042386 + HAL1 LINE L1 1505 1668 -839 384 338 56 8 chr6 27372901 27373167 -155042075 + L1MC/D LINE L1 5446 5724 -2084 537 230 36 24 chr6 27373177 27373342 -155041900 - MIR SINE MIR 0 262 96 258 280 0 32 chr6 27373503 27373596 -155041646 + MLT1I LTR MaLR 320 409 0 793 308 53 15 chr6 27374057 27374395 -155040847 - MLT1I LTR MaLR -33 376 26 26 30 0 0 chr6 27374966 27374999 -155040243 + AT_rich Low_complexity Low_complexity 1 33 0 476 208 120 8 chr6 27375788 27375913 -155039329 - MLT1I LTR MaLR -5 404 266 246 343 19 0 chr6 27375988 27376096 -155039146 - MLT1I LTR MaLR -240 169 60 489 323 139 11 chr6 27376441 27376809 -155038433 - L1MEd LINE L1 -5382 737 323 888 219 92 82 chr6 27377281 27377673 -155037569 - MSTD LTR MaLR 0 396 1 2467 67 3 10 chr6 27377730 27378043 -155037199 - AluSp SINE Alu -2 311 1 184 269 21 11 chr6 27378413 27378506 -155036736 + CT-rich Low_complexity Low_complexity 2 95 0 227 326 0 22 chr6 27378699 27378791 -155036451 - MLT1K LTR MaLR -339 249 160 302 248 19 76 chr6 27378944 27379101 -155036141 - MER112 DNA MER1_type -101 159 12 399 236 29 9 chr6 27379830 27379946 -155035296 + HsTC2 DNA Tc2 1273 1392 -506 2323 112 0 0 chr6 27381604 27381916 -155033326 - AluSx SINE Alu 0 312 1 2884 3 0 0 chr6 27381981 27382291 -155032951 + AluYa5 SINE Alu 1 310 -1 236 289 35 9 chr6 27382632 27382746 -155032496 - MLT1L LTR MaLR -4 611 495 314 265 44 52 chr6 27382907 27383043 -155032199 - MLT1L LTR MaLR -358 257 123 293 226 97 40 chr6 27383146 27383270 -155031972 + L2 LINE L2 3073 3203 -110 303 28 0 0 chr6 27383415 27383451 -155031791 + (CA)n Simple_repeat Simple_repeat 1 36 0 402 307 66 21 chr6 27383533 27383820 -155031422 - ERVL LTR ERVL -440 5324 5025 1783 181 88 38 chr6 27384119 27384538 -155030704 - MLT2B1 LTR ERVL -76 444 5 574 224 75 87 chr6 27384540 27384941 -155030301 + L1ME3A LINE L1 4746 5141 -1005 2177 185 91 33 chr6 27384956 27385508 -155029734 + L1MD3 LINE L1 7405 7988 -7 282 259 111 37 chr6 27385487 27385587 -155029655 + L1ME3A LINE L1 5931 6022 -148 * 1116 147 118 0 chr6 27385587 27385798 -155029444 - MER46A DNA MER2_type 0 236 1 282 259 111 37 chr6 27385798 27385913 -155029329 + L1ME3A LINE L1 6022 6162 -8 1847 174 7 3 chr6 27386047 27386341 -155028901 - AluJo SINE Alu -17 295 1 2209 120 0 0 chr6 27386949 27387240 -155028002 + AluSx SINE Alu 1 291 -21 1522 75 0 0 chr6 27387550 27387737 -155027505 + AluSg/x SINE Alu 115 301 -9 342 115 0 0 chr6 27388589 27388641 -155026601 - MLT2B1 LTR ERVL 0 520 469 472 294 125 0 chr6 27388677 27388861 -155026381 + L2 LINE L2 3102 3308 -5 21 0 0 0 chr6 27390005 27390026 -155025216 + AT_rich Low_complexity Low_complexity 1 21 0 2215 116 3 0 chr6 27390631 27390934 -155024308 + AluSx SINE Alu 1 304 -8 896 98 0 0 chr6 27391079 27391202 -155024040 - AluSg/x SINE Alu -2 310 188 363 252 0 10 chr6 27391282 27391385 -155023857 - Charlie2a DNA MER1_type -1 2861 2760 665 184 202 26 chr6 27391397 27391630 -155023612 - Charlie2a DNA MER1_type -1856 1006 733 443 202 233 45 chr6 27391772 27391995 -155023247 - Charlie2a DNA MER1_type -2515 347 83 434 277 102 73 chr6 27392157 27392568 -155022674 + HAL1b LINE L1 254 676 -672 607 215 97 0 chr6 27392605 27392749 -155022493 - MER96 DNA MER1_type? -16 159 2 748 187 0 8 chr6 27392958 27393092 -155022150 + FLAM_C SINE Alu 1 133 0 613 287 123 74 chr6 27393290 27393384 -155021858 + L1M4 LINE L1 3090 3178 -2968 2287 99 0 0 chr6 27393384 27393691 -155021551 + AluSx SINE Alu 1 307 0 613 287 123 74 chr6 27393691 27394415 -155020827 + L1M4 LINE L1 3178 3949 -2197 2488 69 0 3 chr6 27394896 27395202 -155020040 + AluY SINE Alu 1 305 -6 1780 249 145 23 chr6 27395315 27396065 -155019177 - L1ME3A LINE L1 -27 6143 5302 576 296 6 11 chr6 27397266 27397445 -155017797 + MER5B DNA MER1_type 1 178 0 183 61 0 82 chr6 27397987 27398036 -155017206 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 199 386 144 25 chr6 27398450 27398686 -155016556 + L2 LINE L2 2814 3077 -195 228 259 17 17 chr6 27398727 27398785 -155016457 + L2 LINE L2 3236 3293 -20 797 265 59 0 chr6 27399158 27399362 -155015880 + MIR SINE MIR 21 236 -26 297 0 0 0 chr6 27399365 27399398 -155015844 + (TA)n Simple_repeat Simple_repeat 1 33 0 2099 122 7 14 chr6 27400306 27400600 -155014642 - AluSg SINE Alu -18 292 1 690 235 151 0 chr6 27400646 27400825 -155014417 + MIR SINE MIR 3 208 -54 292 341 92 54 chr6 27402061 27402322 -155012920 - L2 LINE L2 -56 3216 2946 256 296 0 0 chr6 27403169 27403223 -155012019 - L2 LINE L2 -86 3186 3133 757 204 23 115 chr6 27403292 27403552 -155011690 + MER112 DNA MER1_type 14 249 -11 21 0 0 0 chr6 27403559 27403580 -155011662 + AT_rich Low_complexity Low_complexity 1 21 0 2558 40 23 0 chr6 27403645 27403947 -155011295 + AluY SINE Alu 1 309 -2 242 353 89 28 chr6 27404010 27404336 -155010906 - L2 LINE L2 -337 2977 2632 784 263 13 44 chr6 27404574 27404802 -155010440 + MIR SINE MIR 2 222 -40 232 271 57 0 chr6 27405103 27405173 -155010069 - HsTC2 DNA Tc2 -474 1424 1351 22 35 0 0 chr6 27406147 27406176 -155009066 + AT_rich Low_complexity Low_complexity 1 29 0 240 171 29 29 chr6 27406228 27406298 -155008944 + A-rich Low_complexity Low_complexity 1 70 0 1299 231 9 69 chr6 27406933 27407133 -155008109 - LTR37A LTR ERV1 -2 424 261 1967 120 33 0 chr6 27407133 27407430 -155007812 + AluSx SINE Alu 1 306 0 1299 231 9 69 chr6 27407430 27407661 -155007581 - LTR37A LTR ERV1 -165 261 18 2288 116 0 0 chr6 27408750 27409044 -155006198 + AluSx SINE Alu 5 298 -14 341 330 45 56 chr6 27409166 27409433 -155005809 + L3 LINE CR1 1255 1518 -59 2256 84 7 7 chr6 27409451 27409748 -155005494 + AluSc SINE Alu 1 297 -12 358 307 64 0 chr6 27410259 27410399 -155004843 + MIR SINE MIR 56 204 -58 2105 130 3 0 chr6 27411004 27411305 -155003937 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr6 27411937 27411960 -155003282 + (TTG)n Simple_repeat Simple_repeat 2 24 0 312 318 139 20 chr6 27412287 27412438 -155002804 - MIR3 SINE MIR -23 185 17 192 365 58 19 chr6 27413384 27413540 -155001702 + MIR SINE MIR 20 181 -81 207 286 36 0 chr6 27413901 27413957 -155001285 + MIR3 SINE MIR 111 168 -40 2013 120 3 55 chr6 27414012 27414337 -155000905 - AluSx SINE Alu -4 308 1 281 280 137 42 chr6 27415093 27415261 -154999981 + MIR SINE MIR 20 203 -59 2556 185 51 19 chr6 27415699 27416185 -154999057 - MLT1D LTR MaLR 0 505 4 1720 146 48 4 chr6 27416311 27416579 -154998663 + AluJo SINE Alu 1 280 -32 719 35 53 9 chr6 27416579 27416692 -154998550 + (GAAA)n Simple_repeat Simple_repeat 4 121 0 357 286 34 50 chr6 27416936 27417018 -154998224 + L2 LINE L2 3197 3278 -35 1921 198 54 9 chr6 27417018 27417367 -154997875 + MLT1A1 LTR MaLR 1 365 0 357 286 34 50 chr6 27417367 27417403 -154997839 + L2 LINE L2 3278 3313 0 2196 68 0 30 chr6 27417634 27417929 -154997313 + L1PA10 LINE L1 5881 6166 -2 2066 117 7 0 chr6 27417965 27418286 -154996956 - AluSx SINE Alu 0 323 1 230 245 92 31 chr6 27419054 27419152 -154996090 + L1ME LINE L1 5727 5830 -332 2098 123 3 7 chr6 27419384 27419685 -154995557 + AluSq SINE Alu 1 300 -13 216 231 0 0 chr6 27419805 27419857 -154995385 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 207 288 12 12 chr6 27419942 27420022 -154995220 + (CA)n Simple_repeat Simple_repeat 1 80 0 909 207 83 87 chr6 27421576 27421842 -154993400 + AluJo SINE Alu 2 266 -46 1173 233 52 39 chr6 27421842 27422147 -154993095 + MLT1E LTR MaLR 285 593 0 2060 131 0 7 chr6 27422728 27423046 -154992196 - AluSx SINE Alu 0 316 1 204 276 0 17 chr6 27423314 27423372 -154991870 - MER5B DNA MER1_type 0 178 122 204 244 0 0 chr6 27423496 27423541 -154991701 + MER5B DNA MER1_type 2 46 -132 696 96 0 0 chr6 27423543 27423637 -154991605 - AluSg/x SINE Alu -9 300 207 368 307 53 0 chr6 27423688 27423802 -154991440 - MER5B DNA MER1_type -57 121 2 288 0 0 0 chr6 27424464 27424496 -154990746 + (TG)n Simple_repeat Simple_repeat 1 32 0 207 0 0 0 chr6 27424495 27424518 -154990724 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1864 142 40 0 chr6 27424674 27424949 -154990293 + AluSq SINE Alu 1 286 -27 22 56 0 0 chr6 27424950 27424986 -154990256 + AT_rich Low_complexity Low_complexity 1 36 0 1572 198 3 22 chr6 27424988 27425302 -154989940 + AluJo SINE Alu 1 308 -4 638 228 264 36 chr6 27425312 27425728 -154989514 - L1MC4 LINE L1 0 8042 7532 360 298 0 0 chr6 27427234 27427338 -154987904 + L1M4 LINE L1 4060 4163 -1983 * 1546 223 19 123 chr6 27427332 27427620 -154987622 + L1M4 LINE L1 2133 2449 -3697 1597 127 0 0 chr6 27427620 27427841 -154987401 + AluSg/x SINE Alu 85 305 -7 1782 124 8 0 chr6 27427842 27428091 -154987151 + AluSx SINE Alu 46 296 -16 1546 223 19 123 chr6 27428091 27428469 -154986773 + L1M4 LINE L1 2448 2732 -3414 4047 174 19 7 chr6 27428476 27429208 -154986034 - L1MA5 LINE L1 0 6300 5560 1127 223 74 11 chr6 27429290 27429559 -154985683 - LTR43 LTR ERV1 -141 461 176 1902 120 0 28 chr6 27429755 27429945 -154985297 - L1MA5 LINE L1 -710 5587 5406 2704 98 8 22 chr6 27429945 27430312 -154984930 + THE1B LTR MaLR 3 364 0 1902 120 0 28 chr6 27430312 27430412 -154984830 - L1MA5 LINE L1 -891 5406 5305 748 206 0 8 chr6 27430412 27430543 -154984699 + FLAM_C SINE Alu 1 130 -3 674 255 35 4 chr6 27430568 27430823 -154984419 + L1M4 LINE L1 2791 3053 -3093 285 109 0 0 chr6 27430986 27431032 -154984210 + (GA)n Simple_repeat Simple_repeat 1 46 0 1837 171 3 10 chr6 27431103 27431408 -154983834 + AluJb SINE Alu 1 303 -9 254 299 69 0 chr6 27431430 27431517 -154983725 + L1MEd LINE L1 561 653 -5466 1885 109 67 4 chr6 27431620 27431936 -154983306 + AluSx SINE Alu 1 333 0 1685 226 72 77 chr6 27431978 27432449 -154982793 - L1MCa LINE L1 -4013 2594 2122 180 0 0 0 chr6 27432449 27432469 -154982773 + (TG)n Simple_repeat Simple_repeat 1 20 0 1944 151 0 0 chr6 27432469 27432748 -154982494 - AluSx SINE Alu -33 279 1 1685 226 72 77 chr6 27432748 27432978 -154982264 - L1MCa LINE L1 -4483 2124 1895 328 304 101 9 chr6 27433162 27433412 -154981830 - L1MCa LINE L1 -4714 1893 1459 2349 93 0 13 chr6 27433420 27433733 -154981509 - AluSg SINE Alu -1 309 1 1932 228 37 14 chr6 27433735 27434652 -154980590 - L1M4 LINE L1 -3320 3062 1088 227 233 11 111 chr6 27434652 27434742 -154980500 - Alu SINE Alu -7 294 214 3424 142 39 24 chr6 27434811 27434898 -154980344 - MER41B LTR ERV1 -35 600 516 2019 140 3 31 chr6 27434898 27435219 -154980023 + AluSx SINE Alu 1 312 0 1947 151 3 22 chr6 27435221 27435533 -154979709 + AluSx SINE Alu 1 306 -6 3424 142 39 24 chr6 27435533 27436033 -154979209 - MER41B LTR ERV1 -119 516 1 1413 115 10 0 chr6 27436033 27436225 -154979017 - MER41B-int LTR ERV1 0 5946 5753 357 154 0 29 chr6 27436227 27436292 -154978950 - Alu SINE Alu -254 48 1 2653 135 20 50 chr6 27436292 27436890 -154978352 - MER41B-int LTR ERV1 -3360 2586 1944 * 11541 122 39 11 chr6 27436869 27438596 -154976646 - MER41B-int LTR ERV1 -4171 1775 1 4428 148 2 2 chr6 27438596 27439231 -154976011 - MER41B LTR ERV1 0 635 1 1300 151 0 59 chr6 27439232 27439434 -154975808 - AluJo SINE Alu -88 224 36 3443 111 78 83 chr6 27439434 27439623 -154975619 + MER41B LTR ERV1 1 189 -446 1683 159 0 4 chr6 27439623 27439887 -154975355 + AluSx SINE Alu 1 263 -49 3443 111 78 83 chr6 27439887 27440335 -154974907 + MER41B LTR ERV1 189 635 0 1300 151 0 59 chr6 27440335 27440370 -154974872 - AluJo SINE Alu -276 36 1 26 50 0 0 chr6 27440374 27440414 -154974828 + AT_rich Low_complexity Low_complexity 1 40 0 2341 161 95 44 chr6 27440692 27441238 -154974004 - MER4B LTR ERV1 -36 574 1 1978 188 51 14 chr6 27441238 27441668 -154973574 - LTR29 LTR ERV1 -15 607 162 250 292 0 0 chr6 27441711 27441776 -154973466 - MER34 LTR ERV1 -457 85 21 2011 117 7 13 chr6 27441838 27442137 -154973105 + AluSx SINE Alu 2 298 -14 801 133 0 23 chr6 27442202 27442330 -154972912 - FLAM_C SINE Alu -13 130 6 810 256 19 0 chr6 27442461 27442621 -154972621 + FRAM SINE Alu 1 163 -3 1458 150 261 18 chr6 27442663 27442946 -154972296 + LTR29 LTR ERV1 1 382 -240 3051 123 103 0 chr6 27442946 27443400 -154971842 + MER61D LTR ERV1 1 501 0 1458 150 261 18 chr6 27443400 27443457 -154971785 + LTR29 LTR ERV1 382 424 -198 526 170 259 34 chr6 27443451 27443598 -154971644 + LTR49 LTR ERV1 416 595 0 * 277 179 43 57 chr6 27443811 27443951 -154971291 + (CA)n Simple_repeat Simple_repeat 2 139 0 434 323 133 9 chr6 27443995 27444326 -154970916 - L2 LINE L2 -19 3294 2923 3956 153 19 6 chr6 27444684 27444850 -154970392 - MER41B LTR ERV1 0 635 473 2167 129 49 52 chr6 27444850 27445215 -154970027 + THE1B LTR MaLR 1 364 0 3956 153 19 6 chr6 27445215 27445675 -154969567 - MER41B LTR ERV1 -162 473 1 266 143 26 91 chr6 27448051 27448128 -154967114 + LTR9 LTR ERV1 455 526 -86 904 137 48 24 chr6 27448252 27448420 -154966822 - LTR49 LTR ERV1 0 595 424 207 100 0 83 chr6 27448462 27448522 -154966720 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1184 146 3 113 chr6 27448556 27448857 -154966385 - LTR29 LTR ERV1 -218 404 137 401 232 71 0 chr6 27448839 27448938 -154966304 - MER34 LTR ERV1 -416 126 21 * 2126 124 3 3 chr6 27449032 27449331 -154965911 - AluSx SINE Alu -13 299 1 764 204 55 35 chr6 27449433 27449634 -154965608 + MER3 DNA MER1_type 1 205 -4 941 165 0 35 chr6 27449691 27449861 -154965381 + AluJb SINE Alu 134 297 -15 2190 68 24 20 chr6 27449863 27450158 -154965084 + AluSc SINE Alu 1 296 -13 1966 126 149 36 chr6 27450168 27450556 -154964686 + LTR23 LTR ERV1 1 432 -5 246 236 0 0 chr6 27450548 27450603 -154964639 - LTR29 LTR ERV1 -385 237 183 * 1712 184 23 3 chr6 27451744 27452049 -154963193 - AluJb SINE Alu -1 311 1 577 269 38 80 chr6 27452541 27452753 -154962489 + MIR SINE MIR 35 237 -25 377 373 12 28 chr6 27453200 27453455 -154961787 + MIR SINE MIR 12 262 0 31 26 0 0 chr6 27454122 27454160 -154961082 + AT_rich Low_complexity Low_complexity 1 38 0 2018 99 52 4 chr6 27454163 27454435 -154960807 - AluSc SINE Alu -24 285 1 613 65 13 0 chr6 27454563 27454640 -154960602 - MADE1 DNA Mariner 0 80 3 188 0 0 69 chr6 27454953 27454982 -154960260 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 647 116 0 0 chr6 27454982 27455068 -154960174 - LTR23 LTR ERV1 -32 405 320 183 42 0 0 chr6 27455634 27455658 -154959584 + (TG)n Simple_repeat Simple_repeat 1 24 0 1667 169 135 51 chr6 27455658 27456072 -154959170 - L1MB3 LINE L1 -16 6167 5719 262 294 272 22 chr6 27456442 27456578 -154958664 - MER91A DNA MER1_type -3 193 24 462 308 126 0 chr6 27457709 27457868 -154957374 + MIR SINE MIR 53 231 -31 978 223 28 87 chr6 27458112 27458225 -154957017 + MER46C DNA MER2_type 5 123 -215 2791 227 29 17 chr6 27458225 27458811 -154956431 - MLT1E LTR MaLR 0 593 1 978 223 28 87 chr6 27458811 27459052 -154956190 + MER46C DNA MER2_type 123 338 0 865 78 9 0 chr6 27459240 27459356 -154955886 - AluSg/x SINE Alu 0 310 194 1902 125 37 17 chr6 27459424 27459721 -154955521 - AluSx SINE Alu -9 303 1 207 105 26 0 chr6 27459746 27459784 -154955458 + T-rich Low_complexity Low_complexity 3 41 0 344 247 122 32 chr6 27459983 27460230 -154955012 - L1M3 LINE L1 -530 5804 5536 271 304 99 33 chr6 27460235 27460416 -154954826 - MIR SINE MIR 0 262 70 1734 177 0 10 chr6 27460502 27460790 -154954452 - AluJo SINE Alu -27 285 1 576 310 65 52 chr6 27460793 27461196 -154954046 - L1ME LINE L1 -393 5777 5370 936 96 8 0 chr6 27461470 27461595 -154953647 + FRAM SINE Alu 20 145 -31 2118 130 10 0 chr6 27461607 27461900 -154953342 + AluSx SINE Alu 1 296 -16 231 218 0 0 chr6 27461909 27461964 -154953278 + GA-rich Low_complexity Low_complexity 3 57 0 229 176 27 0 chr6 27462299 27462373 -154952869 + (TA)n Simple_repeat Simple_repeat 2 77 0 717 193 82 41 chr6 27462385 27462556 -154952686 - AluJo SINE Alu -37 275 98 785 168 69 58 chr6 27462736 27462887 -154952355 - AluJb SINE Alu -19 293 138 1907 157 0 10 chr6 27462887 27463187 -154952055 - AluJb SINE Alu -15 297 1 785 168 69 58 chr6 27463187 27463208 -154952034 - AluJb SINE Alu -174 138 119 201 169 56 11 chr6 27463287 27463376 -154951866 + (CATATA)n Simple_repeat Simple_repeat 4 96 0 964 257 121 50 chr6 27463608 27464552 -154950690 - L1MEd LINE L1 -2659 3470 2460 2161 135 0 0 chr6 27464636 27464940 -154950302 - AluSx SINE Alu -8 304 1 366 287 59 0 chr6 27465112 27465213 -154950029 - L1MEd LINE L1 -5530 589 483 902 253 203 8 chr6 27465223 27465618 -154949624 - LTR33 LTR ERVL -49 472 1 218 235 176 47 chr6 27465916 27466001 -154949241 + MIR SINE MIR 30 125 -83 3098 122 63 87 chr6 27466188 27466795 -154948447 + LTR14B LTR ERVK 17 608 0 561 327 29 5 chr6 27466795 27467000 -154948242 - MIR SINE MIR -7 255 46 1780 138 11 14 chr6 27467023 27467328 -154947914 + AluSx SINE Alu 1 304 0 290 390 0 0 chr6 27467951 27468069 -154947173 + L2 LINE L2 3195 3312 -1 1601 132 25 0 chr6 27468816 27469051 -154946191 + AluSq SINE Alu 1 241 -72 1175 229 124 56 chr6 27469290 27469805 -154945437 + MER34B LTR ERV1 11 560 -5 29 60 0 0 chr6 27470111 27470161 -154945081 + AT_rich Low_complexity Low_complexity 1 50 0 1780 156 45 0 chr6 27470464 27470752 -154944490 + AluJb SINE Alu 1 301 -11 636 238 146 113 chr6 27470842 27471337 -154943905 - MLT1J LTR MaLR 0 511 1 1121 222 111 35 chr6 27471479 27471821 -154943421 - MLT1A2 LTR MaLR -1 373 6 5124 148 44 35 chr6 27471847 27472145 -154943097 - L1MC1 LINE L1 -107 6226 5932 2351 186 79 5 chr6 27472145 27472590 -154942652 + MER66A LTR ERV1 1 478 0 5124 148 44 35 chr6 27472590 27472703 -154942539 - L1MC1 LINE L1 -401 5932 5822 1661 117 98 12 chr6 27472703 27472959 -154942283 - AluSx SINE Alu 0 312 35 5124 148 44 35 chr6 27472959 27473567 -154941675 - L1MC1 LINE L1 -511 5822 5199 2284 142 62 55 chr6 27473567 27473739 -154941503 - Charlie5 DNA MER1_type -1391 1233 1064 901 142 8 15 chr6 27473739 27473873 -154941369 - FLAM_C SINE Alu 0 133 1 2284 142 62 55 chr6 27473873 27474229 -154941013 - Charlie5 DNA MER1_type -1560 1064 701 758 142 0 0 chr6 27474229 27474342 -154940900 - FLAM_C SINE Alu 0 143 31 1077 106 10 212 chr6 27474355 27474544 -154940698 - Charlie5 DNA MER1_type -1950 674 601 1783 143 25 7 chr6 27474544 27474823 -154940419 - AluJb SINE Alu -28 284 1 1077 106 10 212 chr6 27474823 27475019 -154940223 - Charlie5 DNA MER1_type -2023 601 367 31 26 0 0 chr6 27475019 27475057 -154940185 + AT_rich Low_complexity Low_complexity 1 38 0 200 321 138 0 chr6 27475486 27475595 -154939647 + MIR SINE MIR 59 182 -80 32 0 0 0 chr6 27475853 27475885 -154939357 + AT_rich Low_complexity Low_complexity 1 32 0 2038 129 3 10 chr6 27477603 27477905 -154937337 - AluSx SINE Alu -12 300 1 312 285 120 22 chr6 27477948 27478215 -154937027 - L1MC1 LINE L1 -1078 5068 4776 3106 199 79 37 chr6 27478921 27479289 -154935953 - L1ME1 LINE L1 -5 6161 5810 2083 124 24 0 chr6 27479289 27479579 -154935663 - AluSq SINE Alu -16 297 1 3106 199 79 37 chr6 27479579 27480131 -154935111 - L1ME1 LINE L1 -356 5810 5208 787 148 8 16 chr6 27480132 27480284 -154934958 - AluSg/x SINE Alu 0 310 173 1639 208 53 52 chr6 27480284 27480789 -154934453 - L1ME1 LINE L1 -945 5201 4696 2512 122 26 90 chr6 27480860 27480920 -154934322 - L1MA5A LINE L1 -10 6287 6225 192 40 0 0 chr6 27480920 27480945 -154934297 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2240 109 0 0 chr6 27480945 27481229 -154934013 - AluSx SINE Alu -28 284 1 2512 122 26 90 chr6 27481229 27481668 -154933574 - L1MA5A LINE L1 -70 6227 5819 639 260 53 40 chr6 27482007 27482234 -154933008 + MLT1J2 LTR MaLR 97 326 -124 317 242 0 0 chr6 27482715 27482777 -154932465 + L2 LINE L2 3252 3313 0 1737 140 7 42 chr6 27482913 27483221 -154932021 - AluJb SINE Alu -14 298 2 7483 88 4 2 chr6 27483450 27484417 -154930825 + LTR5 LTR ERVK 1 969 0 22 35 0 0 chr6 27484603 27484632 -154930610 + AT_rich Low_complexity Low_complexity 1 29 0 199 313 109 16 chr6 27484737 27484865 -154930377 + MIR3 SINE MIR 68 207 -1 1872 156 7 0 chr6 27485302 27485584 -154929658 - AluSx SINE Alu -28 284 1 2506 70 0 0 chr6 27486087 27486389 -154928853 + AluY SINE Alu 1 302 -9 2120 110 0 0 chr6 27486909 27487191 -154928051 + AluSg SINE Alu 28 309 -1 21 0 0 0 chr6 27487365 27487386 -154927856 + AT_rich Low_complexity Low_complexity 1 21 0 835 154 0 39 chr6 27488048 27488178 -154927064 - FLAM_C SINE Alu -4 129 5 228 362 46 65 chr6 27488896 27489219 -154926023 + L2 LINE L2 988 1304 -2010 313 367 46 0 chr6 27489223 27489332 -154925910 - L2 LINE L2 -8 3305 3192 214 307 27 47 chr6 27489340 27489490 -154925752 + L2 LINE L2 1314 1460 -1854 597 83 73 0 chr6 27489504 27489600 -154925642 - L1MA6 LINE L1 0 6300 6198 341 269 74 7 chr6 27489677 27489826 -154925416 - LTR33 LTR ERVL -8 513 355 550 268 297 4 chr6 27489869 27490145 -154925097 + LTR50 LTR ERVL 101 457 -338 382 231 225 0 chr6 27490157 27490339 -154924903 + LTR50 LTR ERVL 573 795 0 * 459 296 34 22 chr6 27490339 27490626 -154924616 - LTR33 LTR ERVL -164 357 17 270 339 154 9 chr6 27490801 27491034 -154924208 + L2 LINE L2 1698 1964 -1350 437 280 29 46 chr6 27491078 27491251 -154923991 - L1MCa LINE L1 -5318 872 572 255 61 0 0 chr6 27491289 27491322 -154923920 + (TCC)n Simple_repeat Simple_repeat 2 34 0 255 61 0 0 chr6 27491342 27491375 -154923867 + (TCC)n Simple_repeat Simple_repeat 2 34 0 201 74 0 0 chr6 27491395 27491422 -154923820 + (TCC)n Simple_repeat Simple_repeat 2 28 0 1018 239 60 12 chr6 27491493 27491744 -154923498 - L1MCa LINE L1 -5483 562 300 253 346 81 0 chr6 27491822 27491958 -154923284 + L2 LINE L2 2013 2159 -1155 296 351 185 0 chr6 27492009 27492231 -154923011 + L2 LINE L2 2421 2683 -631 2207 120 0 0 chr6 27493092 27493391 -154921851 - AluSx SINE Alu -11 301 3 592 291 34 8 chr6 27493413 27493647 -154921595 + L1ME3A LINE L1 4444 4683 -1463 256 235 158 97 chr6 27493663 27493910 -154921332 + L1ME3A LINE L1 4730 4991 -1155 898 245 121 8 chr6 27493989 27494238 -154921004 + MER77 LTR ERV1 54 330 -275 421 198 59 20 chr6 27494247 27494348 -154920894 + Tigger7 DNA MER2_type 11 115 -618 * 1217 138 67 5 chr6 27494330 27494540 -154920702 + Tigger7 DNA MER2_type 2364 2586 -1 498 265 48 48 chr6 27494550 27494649 -154920593 + MER77 LTR ERV1 355 456 -149 1606 189 65 82 chr6 27494649 27495124 -154920118 - MLT1C LTR MaLR 0 467 1 498 265 48 48 chr6 27495124 27495171 -154920071 + MER77 LTR ERV1 455 501 -104 387 279 247 0 chr6 27495171 27495329 -154919913 - L1ME LINE L1 -420 5742 5546 465 188 132 95 chr6 27495354 27495504 -154919738 + MER77 LTR ERV1 465 602 -3 258 332 88 5 chr6 27495511 27495658 -154919584 + L1ME3A LINE L1 5040 5212 -934 1499 165 34 15 chr6 27495658 27495924 -154919318 + AluJb SINE Alu 1 271 -41 258 332 88 5 chr6 27495924 27495993 -154919249 + L1ME3A LINE L1 5212 5274 -872 2058 138 23 0 chr6 27496011 27496316 -154918926 + AluSx SINE Alu 1 312 0 781 228 66 115 chr6 27496354 27496762 -154918480 + MLT1B LTR MaLR 3 390 0 675 197 14 45 chr6 27496762 27496929 -154918313 + MLT1A2 LTR MaLR 231 390 0 1458 248 47 88 chr6 27496956 27497726 -154917516 + L1ME3A LINE L1 5417 6154 -16 229 308 66 0 chr6 27498231 27498322 -154916920 + MLT1J1 LTR MaLR 2 98 -348 192 255 20 20 chr6 27498594 27498645 -154916597 + MIR3 SINE MIR 154 204 -4 1826 144 14 4 chr6 27498795 27499072 -154916170 + AluSx SINE Alu 1 280 -32 222 62 0 0 chr6 27499072 27499104 -154916138 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 235 232 105 21 chr6 27499142 27499237 -154916005 + L1MB7 LINE L1 5694 5796 -2012 1829 167 3 3 chr6 27499322 27499621 -154915621 - AluJb SINE Alu -11 301 3 1293 183 71 4 chr6 27499677 27499945 -154915297 + AluJo SINE Alu 1 286 -26 26 0 0 0 chr6 27499954 27499980 -154915262 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 27504198 27504221 -154911021 + (T)n Simple_repeat Simple_repeat 1 23 0 603 165 29 0 chr6 27504362 27504465 -154910777 + FLAM_A SINE Alu 1 106 -36 1743 152 14 7 chr6 27505278 27505567 -154909675 + AluSx SINE Alu 1 291 -21 498 216 52 15 chr6 27506915 27507049 -154908193 + L1MB7 LINE L1 6038 6176 -8 702 288 70 89 chr6 27508116 27508630 -154906612 - L2 LINE L2 0 3313 2810 589 254 0 0 chr6 27508633 27508747 -154906495 - MER81 DNA DNA 0 114 1 1038 298 111 26 chr6 27508747 27509243 -154905999 - L2 LINE L2 -513 2801 2264 1875 141 0 10 chr6 27509275 27509565 -154905677 - AluSq SINE Alu -26 287 1 476 191 114 0 chr6 27509663 27509768 -154905474 + MER90 LTR ERV1 25 141 -473 376 184 80 56 chr6 27509863 27509988 -154905254 - L1MC4a LINE L1 -1980 5828 5701 453 190 124 0 chr6 27510007 27510128 -154905114 + L2 LINE L2 2179 2314 -1000 2031 209 70 35 chr6 27511818 27512302 -154902940 + MER34 LTR ERV1 42 542 0 2131 86 28 8 chr6 27513033 27513429 -154901813 - LTR7 LTR ERV1 -2 448 1 1528 221 92 69 chr6 27513478 27513998 -154901244 - MER34 LTR ERV1 0 542 11 27 49 0 0 chr6 27514927 27514968 -154900274 + AT_rich Low_complexity Low_complexity 1 41 0 248 0 31 0 chr6 27515372 27515404 -154899838 + (TA)n Simple_repeat Simple_repeat 2 34 0 865 159 38 0 chr6 27516725 27516882 -154898360 + FRAM SINE Alu 1 160 -16 1379 144 26 96 chr6 27518213 27518525 -154896717 + AluSg SINE Alu 4 293 -17 394 229 83 62 chr6 27518530 27518873 -154896369 - LTR48 LTR ERV1 -119 623 163 336 330 0 0 chr6 27518867 27518961 -154896281 - MER34 LTR ERV1 -448 94 1 * 2142 164 83 20 chr6 27519053 27519565 -154895677 + MER39B LTR ERV1 59 647 -6 2249 93 10 7 chr6 27519815 27520117 -154895125 + AluSq SINE Alu 1 303 -10 649 235 151 47 chr6 27520577 27520875 -154894367 - L2 LINE L2 -2 3311 2983 618 233 79 5 chr6 27521469 27521563 -154893679 + MER33 DNA MER1_type 9 95 -2490 2535 171 42 2 chr6 27521563 27521973 -154893269 - MSTB LTR MaLR 0 426 1 618 233 79 5 chr6 27521973 27522080 -154893162 + MER33 DNA MER1_type 95 225 -99 905 192 145 5 chr6 27522224 27522438 -154892804 - MSTC LTR MaLR -3 425 182 2050 164 154 39 chr6 27522438 27522951 -154892291 + LTR49 LTR ERV1 1 572 -23 1247 224 61 71 chr6 27522979 27523050 -154892192 + L1M4 LINE L1 2117 2187 -3959 2218 105 3 0 chr6 27523050 27523345 -154891897 + AluSq SINE Alu 1 296 -17 1247 224 61 71 chr6 27523345 27523479 -154891763 + L1M4 LINE L1 2187 2321 -3825 3421 181 45 14 chr6 27523479 27524130 -154891112 + LTR51 LTR ERV1 1 671 0 1247 224 61 71 chr6 27524130 27524400 -154890842 + L1M4 LINE L1 2321 2588 -3558 361 209 0 116 chr6 27524449 27524541 -154890701 + MIR SINE MIR 131 205 -57 2425 76 3 0 chr6 27524541 27524843 -154890399 + AluSp SINE Alu 1 303 -10 361 209 0 116 chr6 27524843 27524879 -154890363 + MIR SINE MIR 205 244 -18 313 324 125 5 chr6 27524938 27525154 -154890088 + L1ME LINE L1 5309 5550 -571 953 212 45 38 chr6 27525546 27525624 -154889618 - MER39 LTR ERV1 0 707 631 2172 105 0 3 chr6 27525624 27525920 -154889322 + AluSc SINE Alu 1 295 -14 953 212 45 38 chr6 27525920 27526129 -154889113 - MER39 LTR ERV1 -76 631 418 181 246 29 101 chr6 27526148 27526217 -154889025 + MIR3 SINE MIR 4 67 -141 216 214 0 0 chr6 27526274 27526330 -154888912 + A-rich Low_complexity Low_complexity 1 56 0 3642 118 72 0 chr6 27526331 27526848 -154888394 + MER41C LTR ERV1 1 554 0 2489 58 0 10 chr6 27527007 27527319 -154887923 - AluY SINE Alu -2 309 1 1682 155 7 0 chr6 27528700 27528984 -154886258 - AluSx SINE Alu -22 290 5 293 284 40 0 chr6 27529254 27529328 -154885914 + MER5A DNA MER1_type 30 106 -83 24 0 0 0 chr6 27530662 27530686 -154884556 + AT_rich Low_complexity Low_complexity 1 24 0 1497 223 77 6 chr6 27530736 27531217 -154884025 - MER69 DNA AcHobo -2 2524 2010 1120 296 80 53 chr6 27531215 27531400 -154883842 - MER69 DNA AcHobo -658 568 390 * 2635 43 0 0 chr6 27531400 27531700 -154883542 - AluY SINE Alu -11 300 1 1120 296 80 53 chr6 27531700 27532065 -154883177 - MER69 DNA AcHobo -836 390 3 262 424 5 0 chr6 27532423 27532619 -154882623 - MIR SINE MIR -6 256 60 3870 138 33 71 chr6 27532838 27533556 -154881686 + LTR8 LTR ERV1 1 691 0 1174 188 106 3 chr6 27533696 27533988 -154881254 + MER33 DNA MER1_type 1 322 -2 2268 106 0 10 chr6 27534321 27534633 -154880609 + AluSg SINE Alu 1 309 -1 23 54 0 0 chr6 27534767 27534804 -154880438 + AT_rich Low_complexity Low_complexity 1 37 0 234 0 0 0 chr6 27534805 27534831 -154880411 + (CA)n Simple_repeat Simple_repeat 1 26 0 403 246 49 63 chr6 27534861 27535003 -154880239 + MIR SINE MIR 117 256 -6 2082 116 3 7 chr6 27535244 27535559 -154879683 + AluSx SINE Alu 2 312 0 281 216 39 10 chr6 27535674 27535776 -154879466 + Tigger8 DNA MER2_type 186 290 -376 866 256 46 100 chr6 27535809 27536328 -154878914 + MER34 LTR ERV1 1 491 -51 532 270 63 5 chr6 27536379 27536601 -154878641 + Tigger8 DNA MER2_type 321 555 -111 1791 144 20 13 chr6 27536871 27537176 -154878066 - AluSx SINE Alu -5 307 1 2130 95 21 0 chr6 27537176 27537459 -154877783 - AluSg1 SINE Alu -19 290 1 1540 106 81 93 chr6 27537687 27537870 -154877372 - Tigger7 DNA MER2_type -38 2549 2370 2184 93 0 0 chr6 27537870 27538160 -154877082 + AluSx SINE Alu 10 299 -13 1540 106 81 93 chr6 27538160 27538297 -154876945 - Tigger7 DNA MER2_type -217 2370 2233 21 0 0 0 chr6 27541572 27541593 -154873649 + AT_rich Low_complexity Low_complexity 1 21 0 1721 134 80 0 chr6 27542469 27542745 -154872497 + AluSx SINE Alu 1 298 -14 1947 97 0 12 chr6 27542771 27543028 -154872214 + AluSq SINE Alu 1 254 -59 516 130 0 0 chr6 27543057 27543134 -154872108 + AluS SINE Alu 226 302 -8 354 306 25 0 chr6 27543506 27543627 -154871615 + LTR37B LTR ERV1 1 124 -344 1283 205 37 10 chr6 27543638 27543936 -154871306 - MER33 DNA MER1_type -16 308 3 512 256 30 67 chr6 27544072 27544341 -154870901 + LTR37B LTR ERV1 210 468 0 2325 102 0 0 chr6 27544551 27544844 -154870398 + AluSg SINE Alu 1 293 -17 847 173 0 8 chr6 27545232 27545365 -154869877 - FLAM_C SINE Alu -1 132 1 867 182 6 30 chr6 27545861 27546026 -154869216 + FRAM SINE Alu 1 157 -19 32 0 0 0 chr6 27546029 27546061 -154869181 + AT_rich Low_complexity Low_complexity 1 32 0 369 312 34 73 chr6 27546167 27546401 -154868841 + MARNA DNA Mariner 277 501 -85 346 223 101 40 chr6 27546749 27546897 -154868345 - Charlie1 DNA MER1_type -1 2760 2604 219 214 31 31 chr6 27546927 27547025 -154868217 + (TA)n Simple_repeat Simple_repeat 2 99 0 304 329 180 0 chr6 27547144 27547351 -154867891 + MIR SINE MIR 1 243 -19 787 249 33 57 chr6 27548129 27548374 -154866868 + MIR SINE MIR 2 240 -22 21 36 0 0 chr6 27548374 27548402 -154866840 + AT_rich Low_complexity Low_complexity 1 28 0 1395 161 9 0 chr6 27548985 27549208 -154866034 - AluSx SINE Alu -87 225 1 204 350 58 0 chr6 27549409 27549512 -154865730 - L2 LINE L2 0 3313 3205 280 79 0 0 chr6 27549690 27549728 -154865514 + U2 snRNA snRNA 1 38 -150 2340 80 3 0 chr6 27550717 27551018 -154864224 + AluY SINE Alu 1 302 -9 3485 129 83 45 chr6 27551169 27551263 -154863979 - MER39B LTR ERV1 0 653 564 372 22 0 0 chr6 27551263 27551308 -154863934 + (TTA)n Simple_repeat Simple_repeat 1 45 0 2075 82 34 0 chr6 27551308 27551576 -154863666 - AluSc SINE Alu -32 277 1 3485 129 83 45 chr6 27551576 27552109 -154863133 - MER39B LTR ERV1 -88 565 1 792 184 0 0 chr6 27552185 27552310 -154862932 - FRAM SINE Alu -8 168 44 232 191 128 0 chr6 27552310 27552357 -154862885 + MER20 DNA MER1_type 75 127 -92 2134 172 71 19 chr6 27552389 27552813 -154862429 + MER61-int LTR ERV1 2357 2802 -2415 619 195 76 0 chr6 27552850 27552968 -154862274 + MER52C LTR ERV1 1152 1278 0 908 186 82 0 chr6 27553696 27553879 -154861363 - MER3 DNA MER1_type 0 209 12 795 227 16 27 chr6 27554040 27554225 -154861017 - MLT1A2 LTR MaLR -4 370 188 1304 196 68 7 chr6 27554289 27554569 -154860673 - AluJo SINE Alu -15 297 1 2112 120 31 0 chr6 27554577 27554868 -154860374 - AluSx SINE Alu -12 300 1 806 183 18 24 chr6 27554872 27555036 -154860206 - MLT1A2 LTR MaLR -211 163 1 1551 194 97 16 chr6 27555041 27555423 -154859819 - MLT1C LTR MaLR 0 467 55 3175 166 71 24 chr6 27555478 27556184 -154859058 + LTR1 LTR ERV1 18 785 0 283 83 50 100 chr6 27556184 27556244 -154858998 - MLT1C LTR MaLR -407 60 4 1670 165 3 16 chr6 27556837 27557140 -154858102 - AluJb SINE Alu -13 299 1 1951 144 0 3 chr6 27557248 27557547 -154857695 - AluSx SINE Alu -14 298 1 252 0 0 0 chr6 27557789 27557817 -154857425 + (TG)n Simple_repeat Simple_repeat 2 29 0 349 215 11 33 chr6 27558001 27558101 -154857141 - L1P3 LINE L1 -576 5545 5456 387 0 0 0 chr6 27558184 27558227 -154857015 + (TA)n Simple_repeat Simple_repeat 2 44 0 2107 101 28 3 chr6 27558228 27558515 -154856727 - AluSg SINE Alu -16 294 1 1476 194 88 29 chr6 27559278 27559629 -154855613 + LTR2B LTR ERV1 32 403 -87 1704 60 0 0 chr6 27559629 27559846 -154855396 + Harlequin LTR ERV1 27 243 -6653 * 43036 68 13 12 chr6 27559841 27565531 -154849711 + Harlequin LTR ERV1 1198 6896 0 1861 187 49 49 chr6 27565531 27565980 -154849262 + LTR2 LTR ERV1 1 449 0 1953 127 27 23 chr6 27566328 27566628 -154848614 - AluSx SINE Alu -11 301 1 1358 224 152 8 chr6 27566778 27567179 -154848063 - MLT1C LTR MaLR -6 461 3 1613 175 17 21 chr6 27567348 27567639 -154847603 - AluJo SINE Alu -22 290 1 203 297 14 0 chr6 27568042 27568116 -154847126 + L2 LINE L2 1914 1988 -1326 1073 216 24 72 chr6 27568296 27568471 -154846771 + L1MB7 LINE L1 4622 4775 -1371 2097 108 21 0 chr6 27568471 27568758 -154846484 + AluSx SINE Alu 3 295 -17 1073 216 24 72 chr6 27568758 27568916 -154846326 + L1MB7 LINE L1 4775 4939 -1207 2330 160 108 61 chr6 27568951 27569545 -154845697 + L1MB7 LINE L1 5501 6122 -62 1420 90 0 16 chr6 27569545 27569719 -154845523 - AluSp SINE Alu -6 307 135 2179 115 0 0 chr6 27569719 27570014 -154845228 - AluSq SINE Alu -18 295 1 1420 90 0 16 chr6 27570014 27570028 -154845214 - AluSp SINE Alu -178 135 122 218 278 125 0 chr6 27570314 27570386 -154844856 + MER5B DNA MER1_type 1 81 -97 309 146 109 73 chr6 27570481 27570591 -154844651 - MER51D LTR ERV1 -44 613 500 317 253 42 11 chr6 27571066 27571161 -154844081 + MER5B DNA MER1_type 80 177 -1 219 268 0 14 chr6 27572772 27572843 -154842399 - MIR SINE MIR -80 182 113 338 302 105 20 chr6 27572984 27573262 -154841980 - L2 LINE L2 0 3313 2954 701 182 74 14 chr6 27573357 27573505 -154841737 - MER20 DNA MER1_type -56 163 7 1140 269 42 62 chr6 27573628 27573878 -154841364 - L2 LINE L2 -580 2734 2497 1576 160 56 7 chr6 27573878 27574147 -154841095 + AluJo SINE Alu 1 282 -30 1140 269 42 62 chr6 27574147 27574376 -154840866 - L2 LINE L2 -817 2497 2265 2265 123 3 0 chr6 27574381 27574691 -154840551 + AluSx SINE Alu 1 311 -1 2180 112 10 0 chr6 27576116 27576421 -154838821 + AluSg SINE Alu 1 308 -2 238 232 0 58 chr6 27576583 27576652 -154838590 + MER116 DNA Mariner 2 66 -14 218 291 86 43 chr6 27577628 27577745 -154837497 - L2 LINE L2 -8 3264 3143 256 264 236 28 chr6 27578143 27578287 -154836955 - L2 LINE L2 -557 2757 2584 396 324 6 62 chr6 27578999 27579178 -154836064 + MER91B DNA MER1_type 12 180 -10 561 294 24 57 chr6 27579299 27579427 -154835815 - MIR SINE MIR -21 241 121 2540 75 0 0 chr6 27579427 27579735 -154835507 + AluY SINE Alu 1 308 -3 561 294 24 57 chr6 27579735 27579817 -154835425 - MIR SINE MIR -141 121 38 2301 70 35 7 chr6 27580367 27580653 -154834589 - AluSg SINE Alu -16 294 1 433 188 59 0 chr6 27582583 27582668 -154832574 + L1PB4 LINE L1 6055 6144 -12 332 207 122 98 chr6 27582688 27582852 -154832390 - MIR SINE MIR -5 257 90 2314 103 0 10 chr6 27583104 27583405 -154831837 - AluSx SINE Alu -14 298 1 1473 154 68 11 chr6 27583419 27583698 -154831544 - AluJo SINE Alu -17 295 1 24 0 0 0 chr6 27583823 27583847 -154831395 + AT_rich Low_complexity Low_complexity 1 24 0 2293 94 3 0 chr6 27584032 27584330 -154830912 - AluSg SINE Alu -11 299 1 1508 173 0 23 chr6 27584623 27584760 -154830482 + AluJb SINE Alu 1 131 -181 2465 68 13 0 chr6 27584760 27585067 -154830175 + AluSp SINE Alu 1 311 -2 1508 173 0 23 chr6 27585067 27585195 -154830047 + AluJb SINE Alu 131 260 -52 25 51 0 0 chr6 27585195 27585234 -154830008 + AT_rich Low_complexity Low_complexity 1 39 0 417 39 0 0 chr6 27585886 27585937 -154829305 + (CA)n Simple_repeat Simple_repeat 1 51 0 824 148 0 25 chr6 27586028 27586150 -154829092 - FLAM_C SINE Alu -16 127 9 21 0 0 0 chr6 27587760 27587781 -154827461 + AT_rich Low_complexity Low_complexity 1 21 0 1554 109 134 18 chr6 27588744 27589020 -154826222 + AluSg SINE Alu 2 309 -1 2046 95 7 0 chr6 27589216 27589489 -154825753 + AluSg1 SINE Alu 3 277 -32 180 0 0 0 chr6 27589489 27589509 -154825733 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 249 280 37 28 chr6 27590538 27590590 -154824652 - Charlie4 DNA MER1_type -1837 124 74 207 0 0 0 chr6 27590590 27590613 -154824629 + (CAA)n Simple_repeat Simple_repeat 2 24 0 249 280 37 28 chr6 27590613 27590667 -154824575 - Charlie4 DNA MER1_type -1887 74 17 824 176 152 80 chr6 27590947 27591119 -154824123 - AluJo SINE Alu -1 311 114 1656 154 37 74 chr6 27591119 27591469 -154823773 - MER1B DNA MER1_type 0 337 1 824 176 152 80 chr6 27591469 27591546 -154823696 - AluJo SINE Alu -198 114 44 26 0 0 0 chr6 27592770 27592796 -154822446 + AT_rich Low_complexity Low_complexity 1 26 0 861 178 235 9 chr6 27593247 27593460 -154821782 + AluJo SINE Alu 1 261 -51 2156 110 3 3 chr6 27593755 27594056 -154821186 - AluSq SINE Alu -11 302 2 1732 153 28 7 chr6 27594399 27594687 -154820555 + AluJo SINE Alu 1 294 -18 278 306 75 20 chr6 27594699 27594846 -154820396 + MER112 DNA MER1_type 99 253 -7 320 219 233 41 chr6 27595143 27595289 -154819953 - MIR SINE MIR 0 262 89 838 173 0 0 chr6 27595315 27595448 -154819794 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr6 27595565 27595595 -154819647 + AT_rich Low_complexity Low_complexity 1 30 0 264 275 107 60 chr6 27596881 27597179 -154818063 + MLT1J LTR MaLR 200 511 0 237 336 98 25 chr6 27597203 27597325 -154817917 + L2 LINE L2 3183 3313 0 243 187 152 123 chr6 27597422 27597593 -154817649 - L1ME LINE L1 -566 5555 5380 262 250 47 70 chr6 27597718 27597846 -154817396 + MIR3 SINE MIR 15 139 -69 919 231 76 43 chr6 27597862 27598304 -154816938 - MLT1B LTR MaLR 0 390 4 731 217 115 33 chr6 27598681 27598985 -154816257 + L1ME4a LINE L1 5513 5841 -280 222 156 16 47 chr6 27599018 27599082 -154816160 + (TA)n Simple_repeat Simple_repeat 1 62 0 789 278 24 40 chr6 27599442 27599690 -154815552 - MIR SINE MIR -1 261 18 29 28 0 0 chr6 27599993 27600029 -154815213 + AT_rich Low_complexity Low_complexity 1 36 0 226 313 12 0 chr6 27600187 27600270 -154814972 + A-rich Low_complexity Low_complexity 3 86 0 1708 155 3 52 chr6 27600630 27600939 -154814303 + AluJb SINE Alu 1 294 -18 609 287 25 30 chr6 27601534 27601736 -154813506 - MIR SINE MIR -51 211 11 224 270 68 0 chr6 27601786 27601860 -154813382 - MIR SINE MIR -51 211 133 22 35 0 0 chr6 27604090 27604119 -154811123 + AT_rich Low_complexity Low_complexity 1 29 0 2032 100 50 0 chr6 27604402 27604682 -154810560 + AluSx SINE Alu 3 296 -16 2412 68 7 3 chr6 27605991 27606301 -154808941 + AluSp SINE Alu 1 311 -2 490 253 108 82 chr6 27607148 27607563 -154807679 - MER101 LTR ERV1 -36 438 13 1609 130 14 42 chr6 27609544 27609829 -154805413 + AluSx SINE Alu 15 291 -21 1959 93 87 14 chr6 27609969 27610258 -154804984 - AluSq SINE Alu -3 310 1 433 234 48 35 chr6 27611037 27611182 -154804060 - MIR SINE MIR -14 248 102 2050 110 0 38 chr6 27611940 27612232 -154803010 + AluSx SINE Alu 11 291 -21 919 112 0 8 chr6 27612234 27612359 -154802883 + AluSc SINE Alu 104 227 -82 24 0 0 0 chr6 27613172 27613196 -154802046 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 27613238 27613265 -154801977 + AT_rich Low_complexity Low_complexity 1 27 0 1832 145 15 0 chr6 27613532 27613801 -154801441 - AluSx SINE Alu -39 273 1 1264 169 65 125 chr6 27614119 27614534 -154800708 - MLT1B LTR MaLR 0 390 1 1986 188 38 40 chr6 27614534 27614597 -154800645 - MLT1B-int LTR MaLR 0 1735 1673 2338 84 0 3 chr6 27614597 27614895 -154800347 + AluY SINE Alu 1 297 -14 1986 188 38 40 chr6 27614895 27615252 -154799990 - MLT1B-int LTR MaLR -62 1673 1316 1465 138 16 103 chr6 27615476 27615788 -154799454 + AluY SINE Alu 11 295 -16 2074 191 30 109 chr6 27615917 27616068 -154799174 - MLT1B-int LTR MaLR -486 885 724 1790 171 3 10 chr6 27616068 27616377 -154798865 + AluJb SINE Alu 1 307 -5 2074 191 30 109 chr6 27616377 27616807 -154798435 - MLT1B-int LTR MaLR -647 724 304 1999 124 4 0 chr6 27616807 27617081 -154798161 - AluSg SINE Alu -35 275 1 2074 191 30 109 chr6 27617081 27617359 -154797883 - MLT1B-int LTR MaLR -1067 304 5 778 185 14 7 chr6 27617362 27617508 -154797734 - MLT1B LTR MaLR -4 386 240 556 304 88 44 chr6 27617676 27618219 -154797023 + L2 LINE L2 2142 2708 -606 333 0 0 0 chr6 27618412 27618449 -154796793 + (TG)n Simple_repeat Simple_repeat 2 38 0 2176 112 0 16 chr6 27618814 27619119 -154796123 - AluSc SINE Alu -9 300 1 1036 101 0 22 chr6 27619119 27619258 -154795984 - AluSq/x SINE Alu -177 136 1 2083 127 17 0 chr6 27619492 27619783 -154795459 + AluSx SINE Alu 4 299 -13 590 114 0 0 chr6 27620017 27620096 -154795146 + MADE1 DNA Mariner 2 80 0 343 285 39 8 chr6 27620274 27620404 -154794838 + L2 LINE L2 3156 3289 -24 615 92 0 0 chr6 27620877 27620964 -154794278 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 1971 125 4 4 chr6 27620964 27621243 -154793999 - AluSx SINE Alu -33 279 1 745 163 198 6 chr6 27621589 27621761 -154793481 - MER3 DNA MER1_type -4 205 1 495 214 125 18 chr6 27621843 27621952 -154793290 - MER53 DNA DNA -3 186 51 510 17 0 0 chr6 27621952 27622011 -154793231 + (TA)n Simple_repeat Simple_repeat 2 60 0 495 214 125 18 chr6 27622011 27622069 -154793173 - MER53 DNA DNA -138 51 1 775 241 97 4 chr6 27622661 27622918 -154792324 - L1MC4a LINE L1 -1840 5968 5688 257 294 128 0 chr6 27623011 27623113 -154792129 + MIR SINE MIR 73 187 -75 25 31 0 0 chr6 27623153 27623185 -154792057 + AT_rich Low_complexity Low_complexity 1 32 0 259 235 0 102 chr6 27623530 27623628 -154791614 + L2 LINE L2 3224 3311 -2 1548 191 10 7 chr6 27623755 27624048 -154791194 + AluJb SINE Alu 3 296 -16 198 0 0 0 chr6 27624092 27624114 -154791128 + (CA)n Simple_repeat Simple_repeat 2 23 0 329 277 107 23 chr6 27624140 27624317 -154790925 + MIR SINE MIR 20 211 -51 564 259 61 14 chr6 27625064 27625211 -154790031 - MER63 DNA MER1_type -281 781 2 895 231 103 30 chr6 27626651 27626978 -154788264 - MLT1F1 LTR MaLR -204 363 1 793 246 131 46 chr6 27627165 27627599 -154787643 + LTR33A LTR ERVL 19 489 -34 271 245 71 10 chr6 27627763 27627861 -154787381 + MIR3 SINE MIR 104 207 -1 1021 231 0 5 chr6 27628173 27628372 -154786870 + AluJb SINE Alu 85 282 -30 340 229 174 0 chr6 27628499 27628643 -154786599 + MIR SINE MIR 78 246 -16 2083 131 0 14 chr6 27628712 27629009 -154786233 - AluSx SINE Alu -19 293 1 1559 157 182 40 chr6 27629050 27629446 -154785796 - LTR47A LTR ERVL 0 452 1 180 0 0 0 chr6 27629485 27629505 -154785737 + (A)n Simple_repeat Simple_repeat 1 20 0 2484 55 0 0 chr6 27629734 27630026 -154785216 - AluY SINE Alu -19 292 1 2599 33 0 20 chr6 27630036 27630391 -154784851 - AluY SINE Alu 0 311 1 277 222 62 12 chr6 27630510 27630591 -154784651 - MIR SINE MIR -25 237 153 415 274 19 7 chr6 27630621 27630843 -154784399 - MLT1I LTR MaLR -36 373 105 234 313 70 17 chr6 27630982 27631097 -154784145 - MIR SINE MIR -108 154 34 1825 225 71 52 chr6 27631103 27631622 -154783620 + MLT1F LTR MaLR 3 531 -11 186 209 0 0 chr6 27632090 27632133 -154783109 + G-rich Low_complexity Low_complexity 4 46 0 261 374 11 0 chr6 27632133 27632224 -154783018 - MLT1G LTR MaLR -288 302 211 285 254 103 75 chr6 27632278 27632491 -154782751 + L1ME3A LINE L1 5744 5962 -208 2058 131 23 7 chr6 27632667 27632972 -154782270 - AluSx SINE Alu -2 310 1 2665 40 0 0 chr6 27633145 27633448 -154781794 - AluY SINE Alu -5 306 4 1880 241 79 31 chr6 27633498 27634147 -154781095 - L1MC4a LINE L1 -21 7787 7096 2555 50 0 0 chr6 27634147 27634446 -154780796 + AluY SINE Alu 1 299 -12 1880 241 79 31 chr6 27634446 27634546 -154780696 - L1MC4a LINE L1 -712 7096 7002 1054 168 6 11 chr6 27634568 27634747 -154780495 - AluJo SINE Alu -15 297 120 2016 215 31 103 chr6 27634773 27635013 -154780229 - L1MC4a LINE L1 -206 5915 6379 2284 118 0 0 chr6 27635013 27635317 -154779925 - AluSx SINE Alu -8 304 1 2016 215 31 103 chr6 27635317 27636000 -154779242 - L1MC4a LINE L1 259 6380 5650 314 256 23 30 chr6 27636510 27636643 -154778599 + MER112 DNA MER1_type 123 254 -6 206 381 68 6 chr6 27636648 27636824 -154778418 + MIR SINE MIR 19 205 -57 2179 109 0 13 chr6 27637401 27637703 -154777539 + AluSq SINE Alu 11 308 -5 1235 154 145 0 chr6 27637861 27637972 -154777270 - AluSx SINE Alu -44 268 174 338 0 24 0 chr6 27637972 27638014 -154777228 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1235 154 145 0 chr6 27638014 27638136 -154777106 - AluSx SINE Alu -138 174 1 639 133 0 19 chr6 27638152 27638257 -154776985 + AluSg/x SINE Alu 208 310 0 2477 63 0 0 chr6 27638906 27639205 -154776037 - AluY SINE Alu -10 301 3 242 174 89 15 chr6 27641462 27641530 -154773712 - AluS SINE Alu -15 287 228 261 0 0 0 chr6 27643463 27643492 -154771750 + (T)n Simple_repeat Simple_repeat 1 29 0 378 274 17 69 chr6 27644407 27644582 -154770660 + L1MEd LINE L1 623 788 -5417 556 151 0 0 chr6 27644639 27644725 -154770517 + AluJ/FLAM SINE Alu 1 86 -226 198 0 0 0 chr6 27644734 27644756 -154770486 + (A)n Simple_repeat Simple_repeat 1 22 0 2261 98 3 10 chr6 27644806 27645103 -154770139 + AluSg SINE Alu 1 295 -15 2273 118 0 0 chr6 27645145 27645451 -154769791 + AluSq SINE Alu 1 306 -7 282 232 42 77 chr6 27645508 27645676 -154769566 + L1MEd LINE L1 1011 1172 -5224 1860 175 0 7 chr6 27645708 27646016 -154769226 + AluJb SINE Alu 1 306 -6 27 29 0 0 chr6 27646151 27646185 -154769057 + AT_rich Low_complexity Low_complexity 1 34 0 1642 184 20 7 chr6 27646754 27647058 -154768184 - AluSx SINE Alu -4 308 1 303 269 82 20 chr6 27647059 27647304 -154767938 - L1M4 LINE L1 -2158 3988 3729 1114 138 0 0 chr6 27647337 27647497 -154767745 - AluSg/x SINE Alu -16 296 137 1421 246 138 10 chr6 27647593 27647991 -154767251 - MLT1F1 LTR MaLR -2 565 117 849 196 19 0 chr6 27648001 27648159 -154767083 - FRAM SINE Alu -15 161 1 279 264 36 18 chr6 27648165 27648275 -154766967 - MLT1F1 LTR MaLR -450 117 6 35 0 0 0 chr6 27648812 27648847 -154766395 + AT_rich Low_complexity Low_complexity 1 35 0 2327 110 0 3 chr6 27650912 27651220 -154764022 - AluSx SINE Alu -5 307 1 333 174 0 0 chr6 27651222 27651291 -154763951 + T-rich Low_complexity Low_complexity 1 69 0 189 0 0 0 chr6 27652093 27652114 -154763128 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 597 60 0 12 chr6 27652117 27652200 -154763042 - L1PA4 LINE L1 -3 6152 6071 2242 107 3 22 chr6 27652396 27652715 -154762527 + AluSp SINE Alu 1 313 0 21 36 0 0 chr6 27653190 27653218 -154762024 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 27653308 27653329 -154761913 + AT_rich Low_complexity Low_complexity 1 21 0 35 71 0 0 chr6 27653724 27653794 -154761448 + AT_rich Low_complexity Low_complexity 1 70 0 541 118 50 2 chr6 27653910 27654149 -154761093 + AluSg SINE Alu 1 309 -1 593 258 123 27 chr6 27654348 27654608 -154760634 + L2 LINE L2 3023 3307 -6 416 264 74 31 chr6 27654692 27654855 -154760387 + MIR SINE MIR 92 261 -1 226 135 54 0 chr6 27655783 27655820 -154759422 + LTR64 LTR ERVK 407 445 -113 429 193 34 0 chr6 27655822 27655910 -154759332 - MER5A DNA MER1_type -91 98 8 2244 68 3 10 chr6 27656423 27656717 -154758525 + AluSc SINE Alu 1 292 -17 712 161 54 27 chr6 27657087 27657236 -154758006 - ORSL DNA AcHobo 0 275 123 2478 40 24 10 chr6 27657244 27657540 -154757702 - AluY SINE Alu -11 300 1 489 319 147 19 chr6 27657561 27657911 -154757331 - L1MEd LINE L1 -1870 4259 3843 1635 183 17 10 chr6 27657911 27658270 -154756972 - AluSx SINE Alu 0 312 1 489 319 147 19 chr6 27658270 27658349 -154756893 - L1MEd LINE L1 -2286 3843 3775 923 196 12 0 chr6 27658612 27658785 -154756457 + FAM SINE Alu 1 175 0 331 312 38 13 chr6 27659234 27659391 -154755851 - L1MEd LINE L1 -3592 2537 2377 280 245 68 14 chr6 27659401 27659548 -154755694 - L1MEd LINE L1 -5187 932 778 285 290 0 0 chr6 27659660 27659729 -154755513 + L2 LINE L2 3204 3272 0 2220 107 0 46 chr6 27660229 27660556 -154754686 - AluSx SINE Alu 0 312 1 257 267 56 0 chr6 27660689 27660779 -154754463 - L1M4 LINE L1 -3748 2398 2304 252 0 0 0 chr6 27660810 27660838 -154754404 + (TTA)n Simple_repeat Simple_repeat 3 30 0 554 201 22 30 chr6 27661542 27661676 -154753566 + MER92B LTR ERV1 7 139 -497 1071 123 0 0 chr6 27661676 27661822 -154753420 + AluSc SINE Alu 1 146 -163 648 94 0 3 chr6 27661822 27661979 -154753263 - AluSc SINE Alu -108 201 2 650 203 46 33 chr6 27661980 27662040 -154753202 - MER34 LTR ERV1 -377 165 107 4169 39 17 0 chr6 27662040 27662522 -154752720 + LTR2B LTR ERV1 1 490 0 650 203 46 33 chr6 27662522 27662614 -154752628 - MER34 LTR ERV1 -435 107 11 409 244 17 26 chr6 27662622 27662737 -154752505 - L2 LINE L2 -14 3299 3186 1600 155 4 0 chr6 27663034 27663273 -154751969 + AluSx SINE Alu 9 248 -64 237 167 0 0 chr6 27663293 27663347 -154751895 + GA-rich Low_complexity Low_complexity 2 55 0 429 303 76 24 chr6 27663609 27663899 -154751343 + L1ME3A LINE L1 5643 5947 -223 353 219 208 43 chr6 27663986 27664104 -154751138 + FLAM_A SINE Alu 1 126 -176 1937 157 0 7 chr6 27664104 27664403 -154750839 - AluSx SINE Alu -15 297 1 2098 137 3 7 chr6 27664478 27664784 -154750458 - AluSx SINE Alu -7 305 1 204 351 58 35 chr6 27665791 27665920 -154749322 + MIR SINE MIR 37 162 -100 1965 118 40 20 chr6 27665920 27666224 -154749018 - AluSg SINE Alu 0 310 1 2404 81 7 0 chr6 27666224 27666531 -154748711 - AluY SINE Alu -2 309 1 2218 100 7 3 chr6 27666532 27666831 -154748411 - AluSq SINE Alu -13 300 1 204 351 58 35 chr6 27666831 27666872 -154748370 + MIR SINE MIR 161 214 -48 25 0 0 0 chr6 27667284 27667309 -154747933 + AT_rich Low_complexity Low_complexity 1 25 0 417 108 31 0 chr6 27669379 27669444 -154745798 - MER5A DNA MER1_type -1 188 122 346 205 145 43 chr6 27669758 27669875 -154745367 - L2 LINE L2 -1 3312 3184 2023 151 0 25 chr6 27669887 27670206 -154745036 + AluSx SINE Alu 1 311 -1 2231 118 3 0 chr6 27670488 27670793 -154744449 - AluSp SINE Alu -6 307 2 244 132 0 0 chr6 27670884 27670922 -154744320 - AluSx SINE Alu -7 293 256 1179 139 6 0 chr6 27670925 27671098 -154744144 - AluSx SINE Alu -138 174 1 274 312 80 37 chr6 27671327 27671651 -154743591 - MLT1J LTR MaLR -74 376 64 1456 160 11 18 chr6 27672507 27672782 -154742460 + AluJb SINE Alu 1 273 -39 2436 74 7 7 chr6 27673665 27673974 -154741268 - AluSg SINE Alu -1 309 1 21 0 0 0 chr6 27674641 27674662 -154740580 + AT_rich Low_complexity Low_complexity 1 21 0 502 250 109 77 chr6 27674811 27675042 -154740200 + Charlie4a DNA MER1_type 5 250 -1711 2389 87 0 3 chr6 27675042 27675352 -154739890 + AluY SINE Alu 1 309 -2 502 250 109 77 chr6 27675352 27675432 -154739810 + Charlie4a DNA MER1_type 250 326 -182 1434 164 87 22 chr6 27675441 27675716 -154739526 + AluSx SINE Alu 13 305 -7 477 203 16 0 chr6 27675719 27675842 -154739400 + Charlie4a DNA MER1_type 315 439 -69 1948 142 7 0 chr6 27675843 27676145 -154739097 + AluSx SINE Alu 2 305 0 1973 129 11 0 chr6 27676152 27676457 -154738785 + AluSx SINE Alu 1 308 0 2067 124 0 23 chr6 27676913 27677220 -154738022 + AluSg SINE Alu 1 300 -10 246 328 47 16 chr6 27677368 27677496 -154737746 - MIR3 SINE MIR -76 132 1 23 33 0 0 chr6 27678291 27678321 -154736921 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr6 27678429 27678459 -154736783 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr6 27678948 27678976 -154736266 + AT_rich Low_complexity Low_complexity 1 28 0 368 261 23 102 chr6 27680012 27680120 -154735122 + FRAM SINE Alu 1 91 -211 2040 128 7 0 chr6 27680120 27680416 -154734826 - AluSx SINE Alu -14 298 1 368 261 23 102 chr6 27680416 27680483 -154734759 + FRAM SINE Alu 91 162 -4 180 0 0 0 chr6 27682101 27682121 -154733121 + (A)n Simple_repeat Simple_repeat 1 20 0 1979 122 7 16 chr6 27682548 27682851 -154732391 - AluSg SINE Alu -10 300 1 31 68 0 0 chr6 27685029 27685088 -154730154 + AT_rich Low_complexity Low_complexity 1 59 0 2288 104 0 0 chr6 27685144 27685442 -154729800 - AluSp SINE Alu -15 298 1 715 280 48 72 chr6 27685797 27686312 -154728930 + MLT1D LTR MaLR 3 505 0 32 67 0 0 chr6 27686960 27687020 -154728222 + AT_rich Low_complexity Low_complexity 1 60 0 2891 161 67 13 chr6 27687171 27687711 -154727531 - MER39B LTR ERV1 -84 569 1 25 31 0 0 chr6 27687889 27687921 -154727321 + AT_rich Low_complexity Low_complexity 1 32 0 2229 104 10 0 chr6 27687997 27688294 -154726948 - AluSp SINE Alu -12 301 2 833 199 120 61 chr6 27689770 27690096 -154725146 + LOR1b LTR ERV1 3 347 -114 267 225 169 0 chr6 27690095 27690166 -154725076 + LTR51 LTR ERV1 468 550 -121 * 1861 153 13 7 chr6 27690690 27690991 -154724251 + AluSx SINE Alu 1 303 -9 502 345 38 13 chr6 27691223 27691539 -154723703 - L2 LINE L2 -26 3287 2964 515 253 38 21 chr6 27691773 27691959 -154723283 + LTR43 LTR ERV1 133 321 -281 242 221 70 89 chr6 27691988 27692146 -154723096 + LTR58 LTR ERV1 513 667 -12 1486 264 37 73 chr6 27692180 27692318 -154722924 - L2 LINE L2 -467 2847 2706 222 37 0 0 chr6 27692318 27692345 -154722897 + (CA)n Simple_repeat Simple_repeat 2 28 0 1486 264 37 73 chr6 27692345 27692357 -154722885 - L2 LINE L2 -608 2706 2695 2285 103 0 0 chr6 27692357 27692657 -154722585 - AluY SINE Alu -11 300 1 1486 264 37 73 chr6 27692657 27693232 -154722010 - L2 LINE L2 -619 2695 2147 805 291 151 29 chr6 27693937 27694208 -154721034 + L2 LINE L2 2452 2689 -624 2286 76 0 3 chr6 27694208 27694509 -154720733 + AluY SINE Alu 1 300 -11 805 291 151 29 chr6 27694509 27694810 -154720432 + L2 LINE L2 2689 3086 -227 973 115 0 0 chr6 27694927 27695057 -154720185 + AluSq/x SINE Alu 1 130 -183 1553 123 5 0 chr6 27695061 27695273 -154719969 + AluSx SINE Alu 1 213 -99 2180 118 3 16 chr6 27695664 27695978 -154719264 + AluSx SINE Alu 1 310 -2 215 289 72 0 chr6 27696644 27696727 -154718515 + L2 LINE L2 3225 3313 0 2907 13 0 0 chr6 27696789 27697099 -154718143 - AluY SINE Alu -1 310 1 324 0 0 0 chr6 27697262 27697298 -154717944 + (TG)n Simple_repeat Simple_repeat 1 36 0 299 280 105 0 chr6 27697350 27697493 -154717749 - L1ME4a LINE L1 -254 5867 5710 1398 168 137 19 chr6 27697763 27698085 -154717157 + MLT1B LTR MaLR 24 383 -7 682 211 84 80 chr6 27698210 27698309 -154716933 - MER39 LTR ERV1 0 707 610 2317 72 0 34 chr6 27698309 27698630 -154716612 - AluY SINE Alu -1 310 1 682 211 84 80 chr6 27698630 27698829 -154716413 - MER39 LTR ERV1 -97 610 408 275 305 63 0 chr6 27698872 27698967 -154716275 - MER34 LTR ERV1 -428 114 14 2011 115 3 7 chr6 27699076 27699363 -154715879 - AluSq SINE Alu -27 286 1 2283 92 0 16 chr6 27699380 27699694 -154715548 - AluSg SINE Alu 0 310 2 868 242 29 12 chr6 27699842 27700082 -154715160 - AluJo SINE Alu -47 265 22 1418 157 68 4 chr6 27700119 27700368 -154714874 - AluSg SINE Alu -22 288 24 2216 116 0 7 chr6 27702064 27702367 -154712875 + AluSg SINE Alu 1 301 -9 1023 217 86 45 chr6 27702472 27702618 -154712624 + AluJo SINE Alu 1 139 -163 2264 100 0 16 chr6 27702618 27702927 -154712315 + AluSx SINE Alu 7 310 -2 1023 217 86 45 chr6 27702927 27703070 -154712172 + AluJo SINE Alu 139 302 0 2321 125 8 19 chr6 27703909 27704270 -154710972 + MER39B LTR ERV1 3 359 -294 1629 238 53 37 chr6 27704270 27704976 -154710266 + MER49 LTR ERV1 1 923 0 1620 152 24 1 chr6 27704976 27705255 -154709987 + MER39B LTR ERV1 356 622 0 781 227 35 0 chr6 27705523 27705695 -154709547 - FRAM SINE Alu -1 175 1 2091 135 0 13 chr6 27706039 27706351 -154708891 + AluSx SINE Alu 1 308 -4 990 198 90 12 chr6 27706351 27706694 -154708548 - Charlie5 DNA MER1_type -9 2603 2234 349 231 50 33 chr6 27706697 27706734 -154708508 - MER3 DNA MER1_type 6 168 133 1935 130 0 63 chr6 27706734 27707050 -154708192 + AluSx SINE Alu 1 296 -16 349 231 50 33 chr6 27707050 27707133 -154708109 - MER3 DNA MER1_type -29 133 46 1252 47 0 0 chr6 27710560 27710775 -154704467 - AluSp SINE Alu 0 351 137 22 70 0 0 chr6 27711720 27711763 -154703479 + AT_rich Low_complexity Low_complexity 1 43 0 1939 151 0 10 chr6 27712086 27712378 -154702864 + AluSx SINE Alu 1 289 -23 1453 124 5 0 chr6 27712385 27712586 -154702656 + AluSg/x SINE Alu 82 283 -27 216 0 0 0 chr6 27713397 27713421 -154701821 + (CA)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr6 27713674 27713700 -154701542 + (TAA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr6 27713699 27713722 -154701520 + (GAA)n Simple_repeat Simple_repeat 2 24 0 * 2120 116 0 14 chr6 27713870 27714203 -154701039 + AluSx SINE Alu 1 329 0 181 346 47 37 chr6 27714900 27715007 -154700235 + MIR SINE MIR 33 140 -68 2951 148 91 36 chr6 27715235 27715852 -154699390 + MER39B LTR ERV1 3 653 0 25 31 0 0 chr6 27716084 27716116 -154699126 + AT_rich Low_complexity Low_complexity 1 32 0 283 277 48 0 chr6 27716206 27716289 -154698953 - Charlie4a DNA MER1_type 0 508 422 400 248 200 23 chr6 27716347 27716581 -154698661 - Charlie4a DNA MER1_type -181 327 53 1922 95 25 18 chr6 27717577 27717860 -154697382 - AluSg SINE Alu -20 290 6 25 31 0 0 chr6 27720156 27720188 -154695054 + AT_rich Low_complexity Low_complexity 1 32 0 2295 96 3 0 chr6 27720773 27721066 -154694176 + AluSq SINE Alu 1 294 -19 886 179 76 0 chr6 27722422 27722465 -154692777 + MER3 DNA MER1_type 8 64 -145 265 279 101 13 chr6 27722465 27722623 -154692619 - MER3 DNA MER1_type -3 206 35 293 288 0 0 chr6 27722687 27722760 -154692482 - MER5A DNA MER1_type -88 101 29 2257 91 0 7 chr6 27723638 27723934 -154691308 + AluSx SINE Alu 1 294 -18 2052 90 15 0 chr6 27723986 27724253 -154690989 + AluSx SINE Alu 20 290 -22 2028 103 21 0 chr6 27725335 27725617 -154689625 - AluSp SINE Alu -25 288 1 1595 137 16 42 chr6 27725707 27726013 -154689229 + AluSx SINE Alu 3 300 -12 2029 105 0 51 chr6 27726022 27726336 -154688906 + AluSx SINE Alu 1 298 -14 530 218 41 29 chr6 27727039 27727209 -154688033 - MER112 DNA MER1_type -12 248 77 294 297 59 34 chr6 27727278 27727396 -154687846 + LTR67 LTR ERVL 51 171 -386 315 275 28 18 chr6 27727570 27727679 -154687563 + LTR67 LTR ERVL 376 485 -72 1021 197 110 8 chr6 27727839 27728093 -154687149 + MLT1D LTR MaLR 3 282 -223 188 263 62 12 chr6 27728101 27728181 -154687061 + L2 LINE L2 2887 2970 -302 198 0 0 0 chr6 27728739 27728761 -154686481 + (A)n Simple_repeat Simple_repeat 1 22 0 554 293 82 9 chr6 27728851 27729262 -154685980 + LTR33 LTR ERVL 25 511 -10 22 0 0 0 chr6 27729775 27729797 -154685445 + AT_rich Low_complexity Low_complexity 1 22 0 326 285 152 26 chr6 27729868 27730138 -154685104 - L1MC4 LINE L1 -153 7889 7586 2255 78 10 3 chr6 27731488 27731784 -154683458 + AluY SINE Alu 1 298 -13 2056 100 17 7 chr6 27732058 27732347 -154682895 - AluSq SINE Alu -21 292 1 1633 97 9 4 chr6 27733066 27733294 -154681948 - AluSg/x SINE Alu 0 310 82 2025 96 7 30 chr6 27733321 27733623 -154681619 + AluSq SINE Alu 2 296 -17 499 229 99 0 chr6 27733664 27733795 -154681447 + MER34 LTR ERV1 360 503 -39 1447 159 16 60 chr6 27733908 27734223 -154681019 - AluSx SINE Alu -11 301 1 22 0 0 0 chr6 27735225 27735247 -154679995 + AT_rich Low_complexity Low_complexity 1 22 0 328 182 0 152 chr6 27736426 27736525 -154678717 - FLAM SINE Alu -6 127 44 2533 43 3 3 chr6 27738078 27738377 -154676865 + AluY SINE Alu 1 299 -12 2476 61 3 0 chr6 27738390 27738687 -154676555 + AluY SINE Alu 1 298 -13 191 35 0 35 chr6 27738705 27738734 -154676508 + (TA)n Simple_repeat Simple_repeat 1 28 0 242 231 39 0 chr6 27739628 27739680 -154675562 - MLT1J LTR MaLR -220 291 238 2160 99 10 10 chr6 27739683 27739977 -154675265 + AluSx SINE Alu 7 300 -12 1752 171 10 13 chr6 27740218 27740517 -154674725 - AluJb SINE Alu -11 301 4 222 37 0 0 chr6 27740702 27740729 -154674513 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 2084 87 44 0 chr6 27740746 27741021 -154674221 - AluSp SINE Alu -26 287 1 329 272 72 16 chr6 27741308 27741433 -154673809 - LTR24B LTR ERV1 -45 531 400 2629 115 10 30 chr6 27741438 27741837 -154673405 + LTR22A LTR ERVK 68 458 0 9312 139 3 6 chr6 27741894 27743282 -154671960 + HERVK22 LTR ERVK 81 1464 -5373 4952 120 13 3 chr6 27743292 27743992 -154671250 + HERVK22 LTR ERVK 4587 5293 -1544 1652 145 4 0 chr6 27743986 27744228 -154671014 + HERVK22 LTR ERVK 6595 6837 0 * 2934 133 13 2 chr6 27744228 27744681 -154670561 + LTR22A LTR ERVK 1 458 0 2058 108 35 3 chr6 27744733 27745020 -154670222 + AluSg SINE Alu 1 296 -14 768 218 6 18 chr6 27745154 27745319 -154669923 - FRAM SINE Alu -6 170 8 188 322 68 34 chr6 27745380 27745498 -154669744 + MIR SINE MIR 29 150 -112 1632 226 113 18 chr6 27745701 27746214 -154669028 + LTR48B LTR ERV1 1 562 -82 672 288 99 39 chr6 27746212 27746563 -154668679 + MLT1J2 LTR MaLR 9 386 -64 * 201 140 0 60 chr6 27746870 27746886 -154668356 + (GAAAA)n Simple_repeat Simple_repeat 5 20 -31 1537 182 9 64 chr6 27746886 27747216 -154668026 + AluJo SINE Alu 1 312 0 201 140 0 60 chr6 27747216 27747249 -154667993 + (GAAAA)n Simple_repeat Simple_repeat 20 51 0 30 27 0 0 chr6 27747786 27747823 -154667419 + AT_rich Low_complexity Low_complexity 1 37 0 2176 100 13 23 chr6 27747987 27748297 -154666945 + AluSx SINE Alu 1 307 -5 2348 92 0 0 chr6 27748297 27748591 -154666651 + AluSp SINE Alu 1 294 -19 3075 127 65 41 chr6 27748788 27749160 -154666082 - LTR49 LTR ERV1 0 595 203 2182 105 10 3 chr6 27749160 27749456 -154665786 - AluSx SINE Alu -14 298 1 3075 127 65 41 chr6 27749456 27749664 -154665578 - LTR49 LTR ERV1 -392 203 1 2204 179 17 20 chr6 27749668 27749721 -154665521 - LTR56 LTR ERV1 0 437 385 2335 81 0 3 chr6 27749721 27750016 -154665226 + AluSc SINE Alu 1 294 -15 1963 72 97 7 chr6 27750021 27750299 -154664943 + AluY SINE Alu 2 304 -7 2204 179 17 20 chr6 27750299 27750704 -154664538 - LTR56 LTR ERV1 -56 381 9 743 194 0 8 chr6 27750704 27750838 -154664404 + FLAM_C SINE Alu 1 133 0 1848 124 0 15 chr6 27751000 27751265 -154663977 - AluSx SINE Alu -12 300 40 453 234 27 9 chr6 27751265 27751376 -154663866 + MER4C LTR ERV1 353 465 0 1885 169 40 30 chr6 27751376 27751779 -154663463 + MER34B LTR ERV1 158 564 -1 751 303 73 24 chr6 27751843 27752173 -154663069 + L2 LINE L2 2967 3312 -1 2022 122 13 16 chr6 27752268 27752572 -154662670 - AluSx SINE Alu -9 303 1 3947 104 78 48 chr6 27752625 27752880 -154662362 + LTR8 LTR ERV1 1 247 -444 1733 131 93 0 chr6 27752880 27753148 -154662094 + AluSx SINE Alu 5 297 -15 3947 104 78 48 chr6 27753148 27753563 -154661679 + LTR8 LTR ERV1 247 691 0 189 132 0 0 chr6 27753925 27753963 -154661279 + (A)n Simple_repeat Simple_repeat 1 38 0 263 267 145 15 chr6 27754158 27754289 -154660953 + MER5B DNA MER1_type 8 155 -23 244 270 153 15 chr6 27754483 27754620 -154660622 - MER5A DNA MER1_type -6 183 28 198 0 0 0 chr6 27756932 27756954 -154658288 + (A)n Simple_repeat Simple_repeat 1 22 0 2119 90 14 3 chr6 27757735 27758024 -154657218 + AluSq SINE Alu 1 292 -21 24 0 0 0 chr6 27759101 27759125 -154656117 + AT_rich Low_complexity Low_complexity 1 24 0 938 193 41 50 chr6 27759327 27759545 -154655697 - AluJb SINE Alu -19 293 78 320 288 41 53 chr6 27759736 27759906 -154655336 + MIR SINE MIR 91 258 -4 1056 214 78 89 chr6 27760707 27761166 -154654076 + MER39 LTR ERV1 1 609 -98 2140 136 83 2 chr6 27761166 27761562 -154653680 - MSTA LTR MaLR 0 428 1 1056 214 78 89 chr6 27761562 27761660 -154653582 + MER39 LTR ERV1 609 707 0 1803 170 95 6 chr6 27761782 27762140 -154653102 - MLT1B LTR MaLR 0 390 1 1927 165 3 0 chr6 27762423 27762726 -154652516 + AluJb SINE Alu 1 304 -8 21 0 0 0 chr6 27763129 27763150 -154652092 + AT_rich Low_complexity Low_complexity 1 21 0 1918 171 7 0 chr6 27763615 27763908 -154651334 - AluSx SINE Alu -17 295 1 2314 64 50 0 chr6 27763913 27764196 -154651046 - AluY SINE Alu -14 297 1 1260 280 174 18 chr6 27765020 27765721 -154649521 - L2 LINE L2 -299 3014 2208 1724 250 56 38 chr6 27766196 27766959 -154648283 + L2 LINE L2 2128 2904 -410 1789 120 58 7 chr6 27767122 27767398 -154647844 + AluSx SINE Alu 1 290 -22 191 264 83 14 chr6 27767544 27767616 -154647626 + L2 LINE L2 3185 3261 -11 2105 87 28 3 chr6 27767981 27768270 -154646972 + AluSc SINE Alu 1 296 -13 2032 99 43 3 chr6 27768380 27768662 -154646580 + AluSg SINE Alu 1 293 -17 251 193 53 0 chr6 27770274 27770331 -154644911 + tRNA-Gly-GGC tRNA tRNA 4 63 -11 353 131 384 40 chr6 27770440 27770539 -154644703 - FLAM_C SINE Alu 0 133 1 651 0 0 0 chr6 27770745 27770817 -154644425 + tRNA-Met-i tRNA tRNA 1 72 -3 2251 134 0 0 chr6 27771609 27771922 -154643320 - AluSq SINE Alu 0 313 1 321 228 101 0 chr6 27772024 27772103 -154643139 - MER68 LTR ERV1 -13 549 463 2779 143 5 2 chr6 27772225 27772653 -154642589 - LTR3 LTR ERVK 0 429 1 41579 170 22 6 chr6 27772656 27779225 -154636017 - HERVK3 LTR ERVK -2 7241 549 2500 80 0 6 chr6 27779225 27779538 -154635704 - AluY SINE Alu 0 311 1 41579 170 22 6 chr6 27779538 27780054 -154635188 - HERVK3 LTR ERVK -6694 549 43 2970 128 0 2 chr6 27780055 27780485 -154634757 - LTR3 LTR ERVK 0 429 1 1446 259 49 41 chr6 27781101 27781611 -154633631 - LTR53 LTR ERVL 0 519 6 180 0 0 0 chr6 27781808 27781828 -154633414 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 340 290 143 73 chr6 27781972 27782300 -154632942 + L2 LINE L2 2290 2640 -674 2220 98 0 3 chr6 27782373 27782695 -154632547 + AluSx SINE Alu 1 321 0 198 271 17 0 chr6 27782738 27782797 -154632445 - L2 LINE L2 -8 3305 3246 22 56 0 0 chr6 27783139 27783175 -154632067 + AT_rich Low_complexity Low_complexity 1 36 0 668 14 0 0 chr6 27783896 27783969 -154631273 + tRNA-Arg-CGA tRNA tRNA 1 73 -3 229 276 17 0 chr6 27784054 27784112 -154631130 - L1M1 LINE L1 -6835 730 672 195 176 0 270 chr6 27785736 27785753 -154629489 - L2 LINE L2 0 3313 3293 2050 116 30 21 chr6 27785753 27786088 -154629154 - MER44D DNA MER2_type -1 608 1 195 176 0 270 chr6 27786088 27786292 -154628950 - L2 LINE L2 -20 3293 3152 2566 189 44 11 chr6 27786327 27786852 -154628390 + MER34 LTR ERV1 1 542 0 1664 158 62 7 chr6 27786881 27787153 -154628089 - AluJo SINE Alu -25 287 1 261 0 0 0 chr6 27787228 27787257 -154627985 + (CA)n Simple_repeat Simple_repeat 2 30 0 305 254 56 56 chr6 27787553 27787679 -154627563 - MLT1H LTR MaLR -394 155 30 1323 216 49 45 chr6 27787708 27788028 -154627214 + MER90 LTR ERV1 1 317 -174 1594 124 40 90 chr6 27788028 27788347 -154626895 - AluSx SINE Alu 0 304 1 1323 216 49 45 chr6 27788347 27788519 -154626723 + MER90 LTR ERV1 317 487 -4 297 0 0 0 chr6 27788927 27788960 -154626282 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 692 167 0 0 chr6 27788993 27789101 -154626141 - FLAM_C SINE Alu -34 109 2 222 298 0 48 chr6 27789225 27789329 -154625913 - MER5B DNA MER1_type -63 115 17 691 0 0 24 chr6 27789708 27789790 -154625452 - tRNA-Ser-AGC tRNA tRNA -2 83 4 24 32 0 0 chr6 27790415 27790446 -154624796 + AT_rich Low_complexity Low_complexity 1 31 0 728 147 0 70 chr6 27790446 27790575 -154624667 - FLAM_C SINE Alu -19 124 5 643 281 45 0 chr6 27790588 27790766 -154624476 - MER90 LTR ERV1 -421 193 8 1460 154 94 34 chr6 27790845 27791112 -154624130 + AluJb SINE Alu 1 283 -29 243 0 0 0 chr6 27791112 27791139 -154624103 + (CAAAG)n Simple_repeat Simple_repeat 2 28 0 359 259 60 60 chr6 27791408 27791563 -154623679 - L2 LINE L2 0 3313 3156 1978 166 3 0 chr6 27791563 27791865 -154623377 + AluJb SINE Alu 1 303 -9 359 259 60 60 chr6 27791865 27791894 -154623348 - L2 LINE L2 -156 3157 3129 295 271 52 10 chr6 27791941 27792037 -154623205 - MER5B DNA MER1_type 0 178 79 500 243 0 18 chr6 27792296 27792407 -154622835 + MLT1E LTR MaLR 45 153 -440 351 111 111 14 chr6 27792413 27792485 -154622757 + MLT1F1 LTR MaLR 489 567 0 1524 191 181 36 chr6 27792763 27793156 -154622086 + MLT1D LTR MaLR 1 450 -55 932 182 13 13 chr6 27793157 27793316 -154621926 + FRAM SINE Alu 1 156 -20 2209 105 7 3 chr6 27793318 27793624 -154621618 + AluSg SINE Alu 1 307 -3 281 146 218 0 chr6 27793624 27793679 -154621563 + MLT1D LTR MaLR 437 503 -2 306 197 82 0 chr6 27793857 27793918 -154621324 - tRNA-Gln-CAA tRNA tRNA -5 70 5 368 236 0 0 chr6 27794991 27795063 -154620179 - tRNA-Gln-CAA tRNA tRNA -3 72 1 655 14 0 0 chr6 27795415 27795487 -154619755 - tRNA-Gln-CAA tRNA tRNA -3 72 1 21 0 0 0 chr6 27795560 27795581 -154619661 + AT_rich Low_complexity Low_complexity 1 21 0 655 14 0 0 chr6 27795966 27796038 -154619204 - tRNA-Gln-CAA tRNA tRNA -3 72 1 732 12 0 0 chr6 27796815 27796897 -154618345 - tRNA-Ser-TCA tRNA tRNA -3 82 1 651 0 0 0 chr6 27797343 27797415 -154617827 - tRNA-Met-i tRNA tRNA -3 72 1 270 189 19 0 chr6 27797864 27797917 -154617325 - tRNA-Gly-GGC tRNA tRNA -20 54 1 1937 82 4 16 chr6 27798170 27798426 -154616816 + AluSx SINE Alu 16 268 -44 180 111 0 0 chr6 27798428 27798455 -154616787 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 231 167 0 0 chr6 27798485 27798521 -154616721 - MLT1F1 LTR MaLR -221 346 311 2217 60 71 3 chr6 27798526 27798808 -154616434 - AluSx SINE Alu -11 301 1 707 137 26 0 chr6 27798868 27798985 -154616257 - MER110A LTR ERV1 -310 158 39 472 118 0 59 chr6 27798992 27799077 -154616165 + AluJ/FLAM SINE Alu 9 88 -224 195 308 0 0 chr6 27799520 27799572 -154615670 + L2 LINE L2 3136 3187 -85 431 273 132 37 chr6 27799637 27800015 -154615227 - L1ME4a LINE L1 -4 6117 5704 1452 110 0 72 chr6 27800021 27800114 -154615128 - PABL_B LTR ERV1 0 667 569 2398 106 0 0 chr6 27800114 27800425 -154614817 - AluSx SINE Alu -1 311 1 1452 110 0 72 chr6 27800425 27800567 -154614675 - PABL_B LTR ERV1 -98 569 449 1124 76 0 44 chr6 27800566 27800724 -154614518 - PABL_B LTR ERV1 -516 151 1 * 2335 168 70 19 chr6 27800747 27801140 -154614102 + MER67A LTR ERV1 5 428 -115 2091 93 11 7 chr6 27801140 27801420 -154613822 + AluSq SINE Alu 1 281 -32 2335 168 70 19 chr6 27801420 27801501 -154613741 + MER67A LTR ERV1 428 503 -40 2190 105 13 10 chr6 27801580 27801885 -154613357 - AluSq SINE Alu -7 306 1 359 204 113 68 chr6 27802083 27802225 -154613017 - MER87 LTR ERV1 -393 148 15 * 557 80 13 0 chr6 27802224 27802299 -154612943 + MLT1B LTR MaLR 313 388 -2 198 0 0 0 chr6 27802423 27802445 -154612797 + (A)n Simple_repeat Simple_repeat 1 22 0 2323 95 0 3 chr6 27802454 27802749 -154612493 + AluSx SINE Alu 1 294 -18 648 14 0 0 chr6 27803321 27803393 -154611849 - tRNA-Trp tRNA tRNA -3 72 1 518 147 39 0 chr6 27804106 27804208 -154611034 + MER5A DNA MER1_type 84 189 0 2250 69 4 0 chr6 27804266 27804574 -154610668 + AluSp SINE Alu 37 345 0 1520 166 40 34 chr6 27804610 27804935 -154610307 - MLT1B LTR MaLR 0 390 64 396 150 0 0 chr6 27804987 27805047 -154610195 - MLT1B LTR MaLR -310 80 21 668 245 143 8 chr6 27805140 27805377 -154609865 - HAL1 LINE L1 -2236 271 3 23 33 0 0 chr6 27805571 27805601 -154609641 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 27805816 27805838 -154609404 + AT_rich Low_complexity Low_complexity 1 22 0 307 177 32 0 chr6 27806637 27806699 -154608543 - AluYb8 SINE Alu -8 300 237 1278 63 0 6 chr6 27806700 27806859 -154608383 - AluSg SINE Alu -152 158 1 650 27 0 0 chr6 27807037 27807110 -154608132 + tRNA-Arg-CGA tRNA tRNA 1 73 -3 411 216 30 126 chr6 27807311 27807510 -154607732 + MER5A DNA MER1_type 9 188 -1 367 260 141 40 chr6 27807689 27808026 -154607216 + L1MC4 LINE L1 7052 7415 -393 1373 134 9 18 chr6 27808161 27808384 -154606858 - AluJb SINE Alu -7 305 85 297 128 0 0 chr6 27808385 27808432 -154606810 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 1058 174 82 56 chr6 27808576 27808846 -154606396 - AluJo SINE Alu -35 277 1 340 288 146 9 chr6 27808886 27809119 -154606123 + L1MC4 LINE L1 7778 8042 0 23 33 0 0 chr6 27810025 27810055 -154605187 + AT_rich Low_complexity Low_complexity 1 30 0 1295 71 12 12 chr6 27810204 27810372 -154604870 + AluSg/x SINE Alu 133 300 -10 275 308 82 44 chr6 27810531 27810713 -154604529 - L2 LINE L2 -918 2396 2208 2218 75 19 44 chr6 27811235 27811553 -154603689 - AluSg SINE Alu 0 310 1 738 24 0 0 chr6 27811808 27811893 -154603349 + tRNA-Ser-TCC tRNA tRNA 1 85 0 654 14 0 0 chr6 27812359 27812432 -154602810 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 2055 108 14 14 chr6 27812690 27812986 -154602256 - AluSx SINE Alu -13 299 4 613 296 89 41 chr6 27813438 27813874 -154601368 - HAL1 LINE L1 -155 2352 1896 499 233 72 104 chr6 27814123 27814316 -154600926 + MIR SINE MIR 58 244 -18 651 0 0 0 chr6 27814520 27814592 -154600650 - tRNA-Met-i tRNA tRNA -3 72 1 653 27 0 0 chr6 27815660 27815735 -154599507 - tRNA-Trp tRNA tRNA 0 75 1 180 111 0 0 chr6 27816599 27816626 -154598616 + (CCCCG)n Simple_repeat Simple_repeat 1 27 0 404 115 86 137 chr6 27817041 27817180 -154598062 + MIR SINE MIR 124 255 -7 846 159 28 44 chr6 27817226 27817408 -154597834 - AluJb SINE Alu 0 312 134 1625 131 46 19 chr6 27817856 27818115 -154597127 + AluSx SINE Alu 30 295 -17 655 275 133 15 chr6 27818124 27818467 -154596775 + MLT1J2 LTR MaLR 34 436 -14 1913 162 34 0 chr6 27818827 27819123 -154596119 + AluJb SINE Alu 1 306 -6 2273 93 0 27 chr6 27819123 27819423 -154595819 + AluSg SINE Alu 1 293 -17 21 57 0 0 chr6 27819533 27819568 -154595674 + AT_rich Low_complexity Low_complexity 1 35 0 650 265 103 0 chr6 27819623 27819808 -154595434 + MER63A DNA MER1_type 5 208 -2 2420 123 42 24 chr6 27819861 27820285 -154594957 - MSTB1 LTR MaLR 0 432 1 181 298 39 67 chr6 27820285 27820389 -154594853 - MIR SINE MIR -8 254 154 1155 257 73 34 chr6 27820506 27820942 -154594300 + MER90 LTR ERV1 107 559 -16 623 255 113 74 chr6 27821130 27821456 -154593786 - LTR33A LTR ERVL -107 416 78 1879 148 0 0 chr6 27821593 27821902 -154593340 + AluSx SINE Alu 18 326 0 2297 113 0 0 chr6 27822098 27822399 -154592843 - AluSg SINE Alu -9 301 1 1100 199 145 0 chr6 27822720 27822982 -154592260 + MER58B DNA MER1_type 1 300 -41 398 226 0 0 chr6 27823553 27823646 -154591596 - L2 LINE L2 0 3313 3221 356 302 86 29 chr6 27823652 27823791 -154591451 + MLT1L LTR MaLR 322 468 -147 268 179 54 0 chr6 27824428 27824484 -154590758 + MLT1L LTR MaLR 505 563 -52 542 118 16 20 chr6 27825193 27825289 -154589953 + MLT1C LTR MaLR 3 94 -280 968 88 161 0 chr6 27825729 27825866 -154589376 - AluSg SINE Alu -150 160 2 201 291 0 0 chr6 27826072 27826127 -154589115 + G-rich Low_complexity Low_complexity 4 58 0 262 125 0 62 chr6 27826129 27826193 -154589049 + (GGGAGA)n Simple_repeat Simple_repeat 2 61 0 190 155 48 24 chr6 27826237 27826321 -154588921 + GA-rich Low_complexity Low_complexity 4 89 0 2021 154 0 6 chr6 27826645 27826956 -154588286 - AluSx SINE Alu -3 309 1 900 140 0 70 chr6 27826959 27827116 -154588126 - AluJb SINE Alu -24 288 143 207 266 149 43 chr6 27827236 27827424 -154587818 - L2 LINE L2 -64 3249 3042 185 171 73 0 chr6 27827428 27827469 -154587773 + MIR SINE MIR 121 164 -98 592 338 56 45 chr6 27827691 27828542 -154586700 + MER66-int LTR ERV1 3312 4349 -3512 2373 97 0 7 chr6 27828542 27828852 -154586390 + AluSg SINE Alu 1 308 -2 592 338 56 45 chr6 27828852 27829120 -154586122 + MER66-int LTR ERV1 4349 4613 -3248 237 132 0 0 chr6 27829401 27829439 -154585803 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 855 118 0 0 chr6 27829478 27829588 -154585654 - FLAM_C SINE Alu -25 118 9 565 293 66 35 chr6 27829812 27830130 -154585112 + MER66-int LTR ERV1 3438 3765 -520 374 183 92 67 chr6 27830423 27830543 -154584699 + MER66-int LTR ERV1 6539 6661 -15 457 295 6 12 chr6 27830745 27830918 -154584324 + MER41B LTR ERV1 258 429 -206 1732 155 30 41 chr6 27831181 27831535 -154583707 + LTR29 LTR ERV1 303 622 0 245 316 51 34 chr6 27831665 27831782 -154583460 + MIR SINE MIR 4 122 -140 230 260 70 45 chr6 27832426 27832626 -154582616 + L1MC5 LINE L1 7534 7738 -223 1531 157 59 21 chr6 27832632 27832919 -154582323 + AluJo SINE Alu 1 298 -14 202 122 20 20 chr6 27833068 27833117 -154582125 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 2399 93 0 0 chr6 27833137 27833437 -154581805 - AluSx SINE Alu -7 305 6 2394 81 3 13 chr6 27833450 27833759 -154581483 - AluSx SINE Alu -6 306 1 1754 124 127 0 chr6 27833764 27834023 -154581219 - AluSx SINE Alu -20 292 1 288 196 0 0 chr6 27834192 27834243 -154580999 - L2 LINE L2 -4 3309 3259 1772 166 0 17 chr6 27834260 27834555 -154580687 + AluJb SINE Alu 1 290 -22 23 54 0 0 chr6 27835370 27835407 -154579835 + AT_rich Low_complexity Low_complexity 1 37 0 2678 151 2 28 chr6 27835520 27835649 -154579593 - MER70A-int LTR ERVL -2977 2046 1915 3974 153 51 3 chr6 27835649 27836321 -154578921 + MER44D DNA MER2_type 1 704 -1 2678 151 2 28 chr6 27836321 27836627 -154578615 - MER70A-int LTR ERVL -3108 1915 1622 3233 157 57 4 chr6 27836628 27837176 -154578066 - MER70A-int LTR ERVL -3832 1191 615 502 108 0 0 chr6 27837190 27837255 -154577987 - U6 snRNA snRNA -41 66 2 656 148 0 57 chr6 27837258 27837280 -154577962 - MER70A-int LTR ERVL -4376 647 625 2565 114 40 25 chr6 27837280 27837531 -154577711 - L1MA2 LINE L1 0 6304 6041 2306 121 0 0 chr6 27837531 27837844 -154577398 - AluSq SINE Alu 0 313 1 2565 114 40 25 chr6 27837844 27838040 -154577202 - L1MA2 LINE L1 -263 6041 5850 656 148 0 57 chr6 27838040 27838139 -154577103 - MER70A-int LTR ERVL -4398 625 533 553 188 10 20 chr6 27838149 27838250 -154576992 + MER70-int LTR ERVL 27 126 -4897 * 1574 202 24 12 chr6 27838247 27838588 -154576654 - MER70A-int LTR ERVL -4512 511 167 3207 117 29 64 chr6 27838588 27839216 -154576026 - MER4B LTR ERV1 0 779 1 863 213 12 12 chr6 27839217 27839386 -154575856 - MER70A-int LTR ERVL -4854 169 1 1997 187 8 124 chr6 27839386 27839920 -154575322 - MER70A LTR ERVL 0 472 1 256 215 0 129 chr6 27839981 27840028 -154575214 + MLT1J1 LTR MaLR 358 389 -57 1394 221 50 7 chr6 27840028 27840327 -154574915 - AluJb SINE Alu 0 312 1 256 215 0 129 chr6 27840327 27840372 -154574870 + MLT1J1 LTR MaLR 389 438 -8 1423 152 23 38 chr6 27840445 27840709 -154574533 + MER4E LTR ERV1 1 260 -519 2403 99 0 10 chr6 27840710 27841023 -154574219 - AluSq SINE Alu -3 310 1 1909 148 33 10 chr6 27841029 27841198 -154574044 - AluSx SINE Alu 0 312 131 1970 162 0 6 chr6 27841198 27841513 -154573729 - AluSq SINE Alu 0 313 1 1909 148 33 10 chr6 27841513 27841648 -154573594 - AluSx SINE Alu -181 131 1 1486 133 84 0 chr6 27841653 27841878 -154573364 - AluJb SINE Alu -11 301 58 679 87 0 0 chr6 27841890 27841982 -154573260 - AluSg/x SINE Alu -8 304 213 2085 118 0 0 chr6 27841984 27842293 -154572949 + AluSx SINE Alu 1 309 0 949 111 0 15 chr6 27842658 27842793 -154572449 + FLAM_C SINE Alu 1 133 0 310 275 33 11 chr6 27842826 27842917 -154572325 - MIR3 SINE MIR -34 174 82 292 183 0 67 chr6 27843022 27843082 -154572160 - 7SK RNA RNA -2 191 136 749 154 0 0 chr6 27843086 27843196 -154572046 + AluSq/x SINE Alu 2 111 -202 39 0 0 0 chr6 27843319 27843358 -154571884 + AT_rich Low_complexity Low_complexity 1 39 0 2055 109 33 0 chr6 27843358 27843633 -154571609 - AluSg SINE Alu -26 284 1 2099 145 0 3 chr6 27843760 27844064 -154571178 - AluSx SINE Alu -7 305 3 26 0 0 0 chr6 27844073 27844099 -154571143 + AT_rich Low_complexity Low_complexity 1 26 0 2397 89 0 13 chr6 27844423 27844737 -154570505 - AluSg SINE Alu 0 310 1 582 288 15 10 chr6 27845352 27845557 -154569685 - L2 LINE L2 0 3313 3108 452 151 27 0 chr6 27845573 27845646 -154569596 - AluJ/FRAM SINE Alu -21 291 217 499 220 23 38 chr6 27845648 27845780 -154569462 - AluJo/FLAM SINE Alu -170 132 3 1848 264 41 32 chr6 27845819 27846576 -154568666 - L2 LINE L2 -314 2999 2237 420 164 0 0 chr6 27846634 27846701 -154568541 - MLT1E LTR MaLR 0 593 527 1312 130 0 65 chr6 27846701 27846931 -154568311 + AluSg/x SINE Alu 85 299 -13 457 230 23 0 chr6 27846932 27847019 -154568223 - MLT1J LTR MaLR -53 601 513 192 292 45 11 chr6 27847115 27847204 -154568038 + L2 LINE L2 2560 2651 -663 964 204 78 0 chr6 27847555 27847761 -154567481 - LTR65 LTR ERV1 -267 402 181 42 20 0 0 chr6 27848077 27848126 -154567116 + AT_rich Low_complexity Low_complexity 1 49 0 499 243 89 106 chr6 27848132 27848536 -154566706 - MLT1J LTR MaLR -107 404 8 396 59 0 0 chr6 27849694 27849745 -154565497 + (TG)n Simple_repeat Simple_repeat 2 52 0 180 0 0 0 chr6 27849912 27849932 -154565310 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 299 306 82 26 chr6 27850427 27850659 -154564583 - L1ME LINE L1 -350 5771 5527 368 295 116 31 chr6 27851289 27851642 -154563600 - L1MC4a LINE L1 -157 5964 5582 265 299 10 31 chr6 27851703 27851800 -154563442 + L2 LINE L2 3213 3307 -6 324 240 71 52 chr6 27852030 27852184 -154563058 - L2 LINE L2 -656 2658 2502 908 306 45 32 chr6 27853485 27853530 -154561712 + LTR33 LTR ERVL 52 95 -426 2186 208 61 24 chr6 27853530 27854084 -154561158 - MER90 LTR ERV1 0 575 1 908 306 45 32 chr6 27854084 27854502 -154560740 + LTR33 LTR ERVL 95 521 0 217 286 0 0 chr6 27855002 27855058 -154560184 - L2 LINE L2 -13 3259 3204 808 273 99 96 chr6 27855152 27855202 -154560040 + L1MC4a LINE L1 5254 5302 -2506 1986 129 16 3 chr6 27855202 27855505 -154559737 + AluSx SINE Alu 1 307 -5 808 273 99 96 chr6 27855505 27855905 -154559337 + L1MC4a LINE L1 5302 5709 -2099 2240 126 0 0 chr6 27855905 27856198 -154559044 - AluSx SINE Alu -19 293 1 808 273 99 96 chr6 27856198 27856442 -154558800 + L1MC4a LINE L1 5709 5951 -1857 593 270 89 34 chr6 27856496 27856733 -154558509 - MIR SINE MIR -6 256 7 225 0 0 0 chr6 27857457 27857482 -154557760 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr6 27857808 27857828 -154557414 + (A)n Simple_repeat Simple_repeat 1 20 0 351 0 0 0 chr6 27858421 27858460 -154556782 + (A)n Simple_repeat Simple_repeat 1 39 0 1323 215 67 39 chr6 27859474 27859864 -154555378 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 27859999 27860025 -154555217 - MIR SINE MIR -113 149 124 2326 71 0 23 chr6 27860145 27860461 -154554781 + AluY SINE Alu 7 310 -1 487 296 35 23 chr6 27861505 27861677 -154553565 - MIR SINE MIR -37 225 52 443 314 108 5 chr6 27861677 27861862 -154553380 - MIR SINE MIR 0 262 59 235 253 67 0 chr6 27862453 27862528 -154552714 + L2 LINE L2 3190 3269 -3 1577 256 90 21 chr6 27862662 27863053 -154552189 - MLT1E2 LTR MaLR -8 618 180 1539 190 38 7 chr6 27863053 27863363 -154551879 - AluJb SINE Alu 0 302 1 1577 256 90 21 chr6 27863363 27863557 -154551685 - MLT1E2 LTR MaLR -446 180 1 374 285 66 117 chr6 27863560 27863834 -154551408 - LTR16C LTR ERVL -62 429 170 445 240 60 53 chr6 27864474 27864624 -154550618 - MLT1G LTR MaLR -18 532 362 1885 136 0 29 chr6 27865891 27866201 -154549041 - AluSx SINE Alu -6 306 6 1067 89 17 17 chr6 27866814 27866994 -154548248 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 437 164 8 37 chr6 27866997 27867131 -154548111 + GA-rich Low_complexity Low_complexity 4 133 0 225 65 0 0 chr6 27868082 27868113 -154547129 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1249 188 14 32 chr6 27868355 27868662 -154546580 - AluJo SINE Alu 0 307 6 370 254 136 0 chr6 27868680 27868900 -154546342 - MER33 DNA MER1_type -69 255 6 183 26 103 0 chr6 27869140 27869179 -154546063 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2176 100 3 7 chr6 27869769 27870069 -154545173 - AluSg SINE Alu -11 299 1 252 306 24 0 chr6 27870180 27870265 -154544977 + MER94 DNA DNA 36 122 -12 869 173 0 0 chr6 27871668 27871801 -154543441 + FLAM_C SINE Alu 1 133 0 967 272 86 58 chr6 27872930 27873059 -154542183 - L2 LINE L2 -4 3309 3185 1917 136 17 0 chr6 27873059 27873354 -154541888 + AluSg SINE Alu 1 300 -10 967 272 86 58 chr6 27873354 27873955 -154541287 - L2 LINE L2 -128 3185 2567 1361 256 56 24 chr6 27877969 27878469 -154536773 - Charlie1b DNA MER1_type 0 523 8 2106 175 30 33 chr6 27878499 27878988 -154536254 + MLT2B3 LTR ERVL 1 508 -41 333 91 0 36 chr6 27879022 27879077 -154536165 + MLT2B3 LTR ERVL 461 513 -2 969 174 153 17 chr6 27879282 27879517 -154535725 - MLT1A1 LTR MaLR 0 365 99 2104 267 80 24 chr6 27879701 27880697 -154534545 - L2 LINE L2 0 3313 2236 2311 241 47 24 chr6 27880750 27881330 -154533912 - MLT1E LTR MaLR 0 593 1 1854 161 7 0 chr6 27881530 27881840 -154533402 - AluSx SINE Alu 0 312 1 797 181 6 25 chr6 27881926 27882086 -154533156 - FRAM SINE Alu -20 156 1 213 318 23 11 chr6 27882370 27882458 -154532784 + L2 LINE L2 2273 2361 -953 793 289 40 4 chr6 27882588 27882841 -154532401 + MIR SINE MIR 1 262 0 286 238 0 38 chr6 27882878 27882958 -154532284 + L2 LINE L2 2585 2661 -653 233 317 228 0 chr6 27883239 27883384 -154531858 - MIR SINE MIR -13 249 72 731 189 7 21 chr6 27883742 27883885 -154531357 - MIR SINE MIR -41 221 81 211 244 73 37 chr6 27883932 27884014 -154531228 + L2 LINE L2 3229 3313 0 1062 167 81 18 chr6 27884078 27884299 -154530943 - LTR65 LTR ERV1 -259 410 176 2003 129 7 0 chr6 27884306 27884609 -154530633 + AluSx SINE Alu 6 310 -2 584 212 63 86 chr6 27884831 27884885 -154530357 - MLT1J LTR MaLR -24 487 433 239 0 32 0 chr6 27884885 27884916 -154530326 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 584 212 63 86 chr6 27884916 27885116 -154530126 - MLT1J LTR MaLR -78 433 239 1910 125 10 0 chr6 27885781 27886069 -154529173 + AluSx SINE Alu 1 291 -21 282 332 10 25 chr6 27886924 27887126 -154528116 + L1ME LINE L1 5637 5835 -286 365 271 19 58 chr6 27887251 27887287 -154527955 - L1ME LINE L1 -307 5814 5778 1995 138 0 0 chr6 27887287 27887585 -154527657 - AluSx SINE Alu -14 298 1 365 271 19 58 chr6 27887585 27887755 -154527487 - L1ME LINE L1 -343 5778 5616 740 162 0 0 chr6 27887921 27888032 -154527210 - AluJb SINE Alu -190 122 12 277 316 15 19 chr6 27888777 27888983 -154526259 - L1MC/D LINE L1 -302 5819 5618 277 295 11 32 chr6 27889081 27889176 -154526066 + L2 LINE L2 3215 3307 -6 340 242 85 26 chr6 27889412 27889565 -154525677 - L2 LINE L2 -663 2651 2490 2422 197 19 21 chr6 27890877 27891401 -154523841 - MER90 LTR ERV1 0 614 92 848 308 44 27 chr6 27891443 27891852 -154523390 + LTR33 LTR ERVL 106 521 0 180 268 0 0 chr6 27892343 27892384 -154522858 - L2 LINE L2 -5 3267 3227 935 282 107 57 chr6 27892592 27893134 -154522108 + L1MC4 LINE L1 5383 5951 -1857 452 312 6 19 chr6 27893199 27893356 -154521886 - MIR SINE MIR -101 161 7 221 139 23 0 chr6 27894406 27894449 -154520793 + A-rich Low_complexity Low_complexity 2 45 0 203 219 16 47 chr6 27894695 27894759 -154520483 + A-rich Low_complexity Low_complexity 5 66 0 186 43 0 0 chr6 27894916 27894939 -154520303 + (CA)n Simple_repeat Simple_repeat 2 24 0 262 239 11 0 chr6 27894939 27895031 -154520211 + L1MC4 LINE L1 6610 6702 -1340 207 0 0 0 chr6 27895220 27895243 -154519999 + (A)n Simple_repeat Simple_repeat 1 23 0 1307 234 55 55 chr6 27896371 27896772 -154518470 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 27896907 27896933 -154518309 - MIR SINE MIR -113 149 124 490 244 71 36 chr6 27898102 27898270 -154516972 - MIR SINE MIR -37 225 52 438 305 98 6 chr6 27898273 27898437 -154516805 - MIR SINE MIR -3 259 81 2041 113 3 0 chr6 27898910 27899194 -154516048 - AluSc SINE Alu -15 294 10 221 253 67 0 chr6 27899349 27899424 -154515818 + L2 LINE L2 3190 3269 -3 1773 249 92 20 chr6 27899552 27900093 -154515149 - MLT1E2 LTR MaLR 0 626 47 419 280 61 106 chr6 27900146 27900457 -154514785 - LTR16C LTR ERVL -60 431 135 509 230 15 46 chr6 27901083 27901235 -154514007 - MLT1G LTR MaLR -19 532 361 2288 132 13 24 chr6 27901460 27901839 -154513403 - THE1C LTR MaLR 0 375 1 10144 124 6 48 chr6 27901839 27903488 -154511754 - THE1C-int LTR MaLR 0 1580 1 1745 107 65 4 chr6 27903488 27903750 -154511492 - THE1C LTR MaLR 0 375 98 203 152 0 0 chr6 27904928 27904961 -154510281 + (TG)n Simple_repeat Simple_repeat 1 33 0 446 202 132 97 chr6 27906553 27906811 -154508431 - MER33 DNA MER1_type 0 324 58 314 250 14 0 chr6 27907817 27907889 -154507353 + MER94 DNA DNA 36 108 -26 1850 141 7 7 chr6 27908025 27908315 -154506927 - AluSx SINE Alu -22 290 1 1080 190 10 24 chr6 27909048 27909253 -154505989 + AluJb SINE Alu 87 288 -24 918 179 51 10 chr6 27909598 27909794 -154505448 + AluJo SINE Alu 89 292 -20 299 195 0 69 chr6 27910309 27910396 -154504846 + CT-rich Low_complexity Low_complexity 3 83 0 901 294 137 15 chr6 27911175 27911821 -154503421 - L2 LINE L2 -4 3309 2567 817 156 0 15 chr6 27912321 27912456 -154502786 + FLAM_C SINE Alu 1 133 0 1906 122 10 7 chr6 27914526 27914822 -154500420 + AluSp SINE Alu 1 297 -16 1211 240 95 33 chr6 27916340 27916823 -154498419 - Charlie1b DNA MER1_type -1 522 10 2786 157 84 34 chr6 27916853 27917376 -154497866 + MLT2B3 LTR ERVL 6 554 0 6869 113 29 18 chr6 27917521 27918580 -154496662 + MER11C LTR ERVK 1 1071 0 1290 249 89 46 chr6 27918608 27919125 -154496117 - L2 LINE L2 -492 2822 2284 1982 137 0 0 chr6 27919137 27919448 -154495794 + AluSx SINE Alu 2 312 0 1837 228 93 53 chr6 27919564 27920134 -154495108 - MLT1E LTR MaLR 0 593 1 801 191 6 44 chr6 27920397 27920580 -154494662 - AluJo SINE Alu -11 301 126 816 265 56 4 chr6 27921091 27921340 -154493902 + MIR SINE MIR 1 262 0 292 266 0 0 chr6 27921377 27921441 -154493801 + L2 LINE L2 2585 2648 -666 204 325 140 9 chr6 27921767 27921881 -154493361 - MIR SINE MIR -62 200 72 687 243 160 24 chr6 27922223 27922429 -154492813 - MIR SINE MIR -25 237 4 250 191 0 0 chr6 27922467 27922514 -154492728 + L2 LINE L2 3267 3313 0 891 174 119 15 chr6 27922589 27922790 -154492452 - LTR65 LTR ERV1 -267 402 181 2129 102 3 10 chr6 27922800 27923114 -154492128 + AluSq SINE Alu 1 312 -1 560 246 17 132 chr6 27923345 27923634 -154491608 - MLT1J LTR MaLR -17 494 239 447 19 0 0 chr6 27924992 27925044 -154490198 + (TG)n Simple_repeat Simple_repeat 1 52 0 247 344 15 31 chr6 27925248 27925443 -154489799 + L1ME LINE L1 5644 5835 -286 389 272 61 77 chr6 27925580 27925785 -154489457 - L1M4 LINE L1 -373 5801 5601 646 195 9 9 chr6 27925928 27926041 -154489201 - AluJo SINE Alu -190 122 10 342 299 120 44 chr6 27926674 27927017 -154488225 - L1ME4a LINE L1 -157 5964 5593 282 253 32 53 chr6 27927097 27927192 -154488050 + L2 LINE L2 3215 3307 -6 379 234 71 52 chr6 27927422 27927576 -154487666 - L2 LINE L2 -656 2658 2502 937 294 59 35 chr6 27928876 27928921 -154486321 + LTR33 LTR ERVL 52 94 -427 1900 234 64 18 chr6 27928921 27929471 -154485771 - MER90 LTR ERV1 0 575 1 937 294 59 35 chr6 27929471 27929884 -154485358 + LTR33 LTR ERVL 94 521 0 239 225 50 75 chr6 27930391 27930471 -154484771 - L2 LINE L2 -5 3267 3190 738 266 154 82 chr6 27930536 27930935 -154484307 + L1MC4a LINE L1 5263 5728 -2080 1864 137 3 0 chr6 27930935 27931247 -154483995 - AluSx SINE Alu 0 313 1 738 266 154 82 chr6 27931247 27931489 -154483753 + L1MC4a LINE L1 5728 5951 -1857 705 314 54 4 chr6 27931545 27931584 -154483658 - MIR SINE MIR -2 260 224 1728 166 0 3 chr6 27931584 27931879 -154483363 - AluSx SINE Alu -14 298 5 705 314 54 4 chr6 27931879 27932081 -154483161 - MIR SINE MIR -38 224 7 225 346 87 16 chr6 27934720 27934847 -154480395 + MIR SINE MIR 68 203 -59 1363 242 62 31 chr6 27934920 27935309 -154479933 - LTR33 LTR ERVL -95 426 26 536 279 35 23 chr6 27936608 27936780 -154478462 - MIR SINE MIR -37 225 52 439 297 110 6 chr6 27936783 27936965 -154478277 - MIR SINE MIR -3 259 59 235 253 67 0 chr6 27937556 27937631 -154477611 + L2 LINE L2 3190 3269 -3 1956 115 0 14 chr6 27937802 27938098 -154477144 - AluSc SINE Alu -17 292 1 1669 219 82 45 chr6 27938113 27938484 -154476758 - MLT1E2 LTR MaLR -49 577 182 1553 180 51 3 chr6 27938484 27938779 -154476463 - AluJo SINE Alu -3 309 1 1669 219 82 45 chr6 27938779 27938896 -154476346 - MLT1E2 LTR MaLR -444 182 71 445 309 52 100 chr6 27938976 27939325 -154475917 - LTR16C LTR ERVL -62 429 98 240 216 0 0 chr6 27939570 27939621 -154475621 + MLT1K LTR MaLR 190 240 -348 485 242 26 44 chr6 27939889 27940048 -154475194 - MLT1G LTR MaLR -15 531 362 263 43 0 65 chr6 27941920 27941966 -154473276 + (GA)n Simple_repeat Simple_repeat 1 43 0 597 206 39 105 chr6 27943074 27943360 -154471882 - MER33 DNA MER1_type 0 324 58 424 122 102 51 chr6 27944360 27944458 -154470784 - AluSg/x SINE Alu -7 303 201 318 259 47 0 chr6 27944459 27944544 -154470698 + MER94 DNA DNA 36 124 -10 1853 147 0 7 chr6 27944845 27945152 -154470090 + AluSx SINE Alu 1 305 -7 1725 171 0 0 chr6 27945720 27946001 -154469241 + AluSx SINE Alu 1 281 -31 246 32 0 0 chr6 27946004 27946035 -154469207 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1144 162 9 24 chr6 27946039 27946249 -154468993 + AluJb SINE Alu 87 293 -19 870 198 6 6 chr6 27946617 27946779 -154468463 + FRAM SINE Alu 1 159 -17 487 296 35 23 chr6 27997513 27997685 -154417557 - MIR SINE MIR -37 225 52 443 314 108 5 chr6 27997685 27997870 -154417372 - MIR SINE MIR 0 262 59 235 253 67 0 chr6 27998461 27998536 -154416706 + L2 LINE L2 3190 3269 -3 1593 254 90 21 chr6 27998670 27999061 -154416181 - MLT1E2 LTR MaLR -8 618 180 1539 190 38 7 chr6 27999061 27999371 -154415871 - AluJb SINE Alu 0 302 1 1593 254 90 21 chr6 27999371 27999565 -154415677 - MLT1E2 LTR MaLR -446 180 1 374 285 66 117 chr6 27999568 27999842 -154415400 - LTR16C LTR ERVL -62 429 170 445 240 60 53 chr6 28000482 28000632 -154414610 - MLT1G LTR MaLR -18 532 362 1885 136 0 29 chr6 28001899 28002209 -154413033 - AluSx SINE Alu -6 306 6 1046 94 17 17 chr6 28002818 28002998 -154412244 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 437 164 8 37 chr6 28003001 28003135 -154412107 + GA-rich Low_complexity Low_complexity 4 133 0 225 65 0 0 chr6 28004086 28004117 -154411125 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1249 188 14 32 chr6 28004359 28004666 -154410576 - AluJo SINE Alu 0 307 6 370 254 136 0 chr6 28004684 28004904 -154410338 - MER33 DNA MER1_type -69 255 6 183 26 103 0 chr6 28005144 28005183 -154410059 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2176 100 3 7 chr6 28005773 28006073 -154409169 - AluSg SINE Alu -11 299 1 252 306 24 0 chr6 28006184 28006269 -154408973 + MER94 DNA DNA 36 122 -12 869 173 0 0 chr6 28007672 28007805 -154407437 + FLAM_C SINE Alu 1 133 0 967 272 86 58 chr6 28008934 28009063 -154406179 - L2 LINE L2 -4 3309 3185 1917 136 17 0 chr6 28009063 28009358 -154405884 + AluSg SINE Alu 1 300 -10 967 272 86 58 chr6 28009358 28009959 -154405283 - L2 LINE L2 -128 3185 2567 1361 256 56 24 chr6 28013973 28014473 -154400769 - Charlie1b DNA MER1_type 0 523 8 2106 175 30 33 chr6 28014503 28014992 -154400250 + MLT2B3 LTR ERVL 1 508 -41 333 91 0 36 chr6 28015026 28015081 -154400161 + MLT2B3 LTR ERVL 461 513 -2 969 174 153 17 chr6 28015286 28015521 -154399721 - MLT1A1 LTR MaLR 0 365 99 2104 267 80 24 chr6 28015705 28016701 -154398541 - L2 LINE L2 0 3313 2236 2311 241 47 24 chr6 28016754 28017334 -154397908 - MLT1E LTR MaLR 0 593 1 1819 168 7 0 chr6 28017536 28017846 -154397396 - AluSx SINE Alu 0 312 1 797 181 6 25 chr6 28017932 28018092 -154397150 - FRAM SINE Alu -20 156 1 228 274 0 0 chr6 28018412 28018463 -154396779 + L2 LINE L2 2311 2361 -953 793 289 40 4 chr6 28018593 28018846 -154396396 + MIR SINE MIR 1 262 0 279 250 0 38 chr6 28018883 28018963 -154396279 + L2 LINE L2 2585 2661 -653 233 317 228 0 chr6 28019245 28019390 -154395852 - MIR SINE MIR -13 249 72 731 189 7 21 chr6 28019747 28019890 -154395352 - MIR SINE MIR -41 221 81 211 244 73 37 chr6 28019937 28020019 -154395223 + L2 LINE L2 3229 3313 0 1062 167 81 18 chr6 28020083 28020304 -154394938 - LTR65 LTR ERV1 -259 410 176 2003 129 7 0 chr6 28020311 28020614 -154394628 + AluSx SINE Alu 6 310 -2 515 200 32 158 chr6 28020836 28021121 -154394121 - MLT1J LTR MaLR -24 487 239 1910 125 10 0 chr6 28021786 28022074 -154393168 + AluSx SINE Alu 1 291 -21 295 332 10 25 chr6 28022929 28023131 -154392111 + L1ME LINE L1 5637 5835 -286 346 275 19 58 chr6 28023256 28023292 -154391950 - L1ME LINE L1 -307 5814 5778 1995 138 0 0 chr6 28023292 28023590 -154391652 - AluSx SINE Alu -14 298 1 346 275 19 58 chr6 28023590 28023760 -154391482 - L1ME LINE L1 -343 5778 5616 740 162 0 0 chr6 28023926 28024037 -154391205 - AluJb SINE Alu -190 122 12 277 316 15 19 chr6 28024782 28024988 -154390254 - L1MC/D LINE L1 -302 5819 5618 277 295 11 32 chr6 28025086 28025181 -154390061 + L2 LINE L2 3215 3307 -6 340 242 85 26 chr6 28025417 28025570 -154389672 - L2 LINE L2 -663 2651 2490 2422 197 19 21 chr6 28026882 28027406 -154387836 - MER90 LTR ERV1 0 614 92 818 307 44 29 chr6 28027448 28027858 -154387384 + LTR33 LTR ERVL 106 521 0 180 268 0 0 chr6 28028349 28028390 -154386852 - L2 LINE L2 -5 3267 3227 935 282 107 57 chr6 28028598 28029140 -154386102 + L1MC4 LINE L1 5383 5951 -1857 452 312 6 19 chr6 28029205 28029362 -154385880 - MIR SINE MIR -101 161 7 221 139 23 0 chr6 28030412 28030455 -154384787 + A-rich Low_complexity Low_complexity 2 45 0 203 219 16 47 chr6 28030701 28030765 -154384477 + A-rich Low_complexity Low_complexity 5 66 0 186 43 0 0 chr6 28030922 28030945 -154384297 + (CA)n Simple_repeat Simple_repeat 2 24 0 262 239 11 0 chr6 28030945 28031037 -154384205 + L1MC4 LINE L1 6610 6702 -1340 207 0 0 0 chr6 28031226 28031249 -154383993 + (A)n Simple_repeat Simple_repeat 1 23 0 1307 234 55 55 chr6 28032377 28032778 -154382464 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 28032913 28032939 -154382303 - MIR SINE MIR -113 149 124 490 244 71 36 chr6 28034108 28034276 -154380966 - MIR SINE MIR -37 225 52 438 305 98 6 chr6 28034279 28034443 -154380799 - MIR SINE MIR -3 259 81 2041 113 3 0 chr6 28034916 28035200 -154380042 - AluSc SINE Alu -15 294 10 221 253 67 0 chr6 28035355 28035430 -154379812 + L2 LINE L2 3190 3269 -3 1798 248 92 20 chr6 28035558 28036099 -154379143 - MLT1E2 LTR MaLR 0 626 47 419 280 61 106 chr6 28036152 28036463 -154378779 - LTR16C LTR ERVL -60 431 135 509 230 15 46 chr6 28037089 28037241 -154378001 - MLT1G LTR MaLR -19 532 361 2288 132 13 24 chr6 28037466 28037845 -154377397 - THE1C LTR MaLR 0 375 1 10144 124 6 48 chr6 28037845 28039494 -154375748 - THE1C-int LTR MaLR 0 1580 1 1745 107 65 4 chr6 28039494 28039756 -154375486 - THE1C LTR MaLR 0 375 98 203 152 0 0 chr6 28040934 28040967 -154374275 + (TG)n Simple_repeat Simple_repeat 1 33 0 446 202 132 97 chr6 28042559 28042817 -154372425 - MER33 DNA MER1_type 0 324 58 314 250 14 0 chr6 28043823 28043895 -154371347 + MER94 DNA DNA 36 108 -26 1850 141 7 7 chr6 28044031 28044321 -154370921 - AluSx SINE Alu -22 290 1 1080 190 10 24 chr6 28045054 28045259 -154369983 + AluJb SINE Alu 87 288 -24 918 179 51 10 chr6 28045604 28045800 -154369442 + AluJo SINE Alu 89 292 -20 299 195 0 69 chr6 28046315 28046402 -154368840 + CT-rich Low_complexity Low_complexity 3 83 0 901 294 137 15 chr6 28047181 28047827 -154367415 - L2 LINE L2 -4 3309 2567 817 156 0 15 chr6 28048327 28048462 -154366780 + FLAM_C SINE Alu 1 133 0 1906 122 10 7 chr6 28050532 28050828 -154364414 + AluSp SINE Alu 1 297 -16 1211 240 95 33 chr6 28052346 28052829 -154362413 - Charlie1b DNA MER1_type -1 522 10 2771 157 84 34 chr6 28052859 28053382 -154361860 + MLT2B3 LTR ERVL 6 554 0 6869 113 29 18 chr6 28053527 28054586 -154360656 + MER11C LTR ERVK 1 1071 0 1290 249 89 46 chr6 28054614 28055131 -154360111 - L2 LINE L2 -492 2822 2284 1982 137 0 0 chr6 28055143 28055454 -154359788 + AluSx SINE Alu 2 312 0 1837 228 93 53 chr6 28055570 28056140 -154359102 - MLT1E LTR MaLR 0 593 1 801 191 6 44 chr6 28056403 28056586 -154358656 - AluJo SINE Alu -11 301 126 816 265 56 4 chr6 28057097 28057346 -154357896 + MIR SINE MIR 1 262 0 292 266 0 0 chr6 28057383 28057447 -154357795 + L2 LINE L2 2585 2648 -666 204 325 140 9 chr6 28057773 28057887 -154357355 - MIR SINE MIR -62 200 72 687 243 160 24 chr6 28058229 28058435 -154356807 - MIR SINE MIR -25 237 4 250 191 0 0 chr6 28058473 28058520 -154356722 + L2 LINE L2 3267 3313 0 891 174 119 15 chr6 28058595 28058796 -154356446 - LTR65 LTR ERV1 -267 402 181 2129 102 3 10 chr6 28058806 28059120 -154356122 + AluSq SINE Alu 1 312 -1 531 250 21 132 chr6 28059351 28059639 -154355603 - MLT1J LTR MaLR -17 494 239 375 23 0 0 chr6 28060997 28061041 -154354201 + (TG)n Simple_repeat Simple_repeat 1 44 0 247 344 15 31 chr6 28061245 28061440 -154353802 + L1ME LINE L1 5644 5835 -286 646 195 9 9 chr6 28061925 28062038 -154353204 - AluJo SINE Alu -190 122 10 342 299 120 44 chr6 28062671 28063014 -154352228 - L1ME4a LINE L1 -157 5964 5593 282 253 32 53 chr6 28063094 28063189 -154352053 + L2 LINE L2 3215 3307 -6 379 234 71 52 chr6 28063419 28063573 -154351669 - L2 LINE L2 -656 2658 2502 937 294 59 35 chr6 28064873 28064918 -154350324 + LTR33 LTR ERVL 52 94 -427 1900 234 64 18 chr6 28064918 28065468 -154349774 - MER90 LTR ERV1 0 575 1 937 294 59 35 chr6 28065468 28065881 -154349361 + LTR33 LTR ERVL 94 521 0 239 225 50 75 chr6 28066388 28066468 -154348774 - L2 LINE L2 -5 3267 3190 738 266 154 82 chr6 28066533 28066932 -154348310 + L1MC4a LINE L1 5263 5728 -2080 1864 137 3 0 chr6 28066932 28067244 -154347998 - AluSx SINE Alu 0 313 1 738 266 154 82 chr6 28067244 28067486 -154347756 + L1MC4a LINE L1 5728 5951 -1857 705 314 54 4 chr6 28067542 28067581 -154347661 - MIR SINE MIR -2 260 224 1728 166 0 3 chr6 28067581 28067876 -154347366 - AluSx SINE Alu -14 298 5 705 314 54 4 chr6 28067876 28068078 -154347164 - MIR SINE MIR -38 224 7 225 346 87 16 chr6 28070717 28070844 -154344398 + MIR SINE MIR 68 203 -59 1363 242 62 31 chr6 28070917 28071306 -154343936 - LTR33 LTR ERVL -95 426 26 536 279 35 23 chr6 28072605 28072777 -154342465 - MIR SINE MIR -37 225 52 439 297 110 6 chr6 28072780 28072962 -154342280 - MIR SINE MIR -3 259 59 235 253 67 0 chr6 28073553 28073628 -154341614 + L2 LINE L2 3190 3269 -3 1956 115 0 14 chr6 28073799 28074095 -154341147 - AluSc SINE Alu -17 292 1 1685 217 82 45 chr6 28074110 28074481 -154340761 - MLT1E2 LTR MaLR -49 577 182 1544 180 51 3 chr6 28074481 28074775 -154340467 - AluJo SINE Alu -4 308 1 1685 217 82 45 chr6 28074775 28074892 -154340350 - MLT1E2 LTR MaLR -444 182 71 417 312 52 100 chr6 28074972 28075321 -154339921 - LTR16C LTR ERVL -62 429 98 240 216 0 0 chr6 28075566 28075617 -154339625 + MLT1K LTR MaLR 190 240 -348 485 242 26 44 chr6 28075885 28076044 -154339198 - MLT1G LTR MaLR -15 531 362 263 43 0 65 chr6 28077916 28077962 -154337280 + (GA)n Simple_repeat Simple_repeat 1 43 0 610 203 39 105 chr6 28079070 28079356 -154335886 - MER33 DNA MER1_type 0 324 58 424 122 102 51 chr6 28080377 28080475 -154334767 - AluSg/x SINE Alu -7 303 201 318 259 47 0 chr6 28080476 28080561 -154334681 + MER94 DNA DNA 36 124 -10 1829 150 0 7 chr6 28080862 28081169 -154334073 + AluSx SINE Alu 1 305 -7 1741 167 0 0 chr6 28081737 28082018 -154333224 + AluSx SINE Alu 1 281 -31 243 0 0 0 chr6 28082021 28082048 -154333194 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1169 156 9 24 chr6 28082052 28082263 -154332979 + AluJb SINE Alu 87 294 -18 870 198 6 6 chr6 28082632 28082794 -154332448 + FRAM SINE Alu 1 159 -17 263 281 0 24 chr6 28083314 28083396 -154331846 + CT-rich Low_complexity Low_complexity 4 83 0 273 29 0 0 chr6 28083978 28084012 -154331230 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1927 134 3 3 chr6 28084045 28084336 -154330906 - AluSx SINE Alu -21 291 1 1013 287 113 15 chr6 28084497 28085161 -154330081 - L2 LINE L2 -4 3309 2567 774 178 0 15 chr6 28085649 28085784 -154329458 + FLAM_C SINE Alu 1 133 0 2119 96 0 0 chr6 28087544 28087846 -154327396 - AluSx SINE Alu 0 302 1 1090 190 24 108 chr6 28089566 28090092 -154325150 - Charlie1b DNA MER1_type 0 523 42 847 182 30 66 chr6 28090098 28090296 -154324946 + AluJo SINE Alu 104 294 -18 1943 100 14 10 chr6 28090300 28090589 -154324653 + AluSq SINE Alu 1 290 -23 2903 173 27 20 chr6 28090689 28091238 -154324004 + MLT2B3 LTR ERVL 1 553 -1 850 226 49 10 chr6 28091449 28091653 -154323589 - MLT1A1 LTR MaLR 0 365 154 401 132 74 4 chr6 28091680 28091884 -154323358 + AluSx SINE Alu 1 297 -13 311 0 0 25 chr6 28091884 28091924 -154323318 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 577 255 29 39 chr6 28091925 28092129 -154323113 - L2 LINE L2 -876 2438 2237 473 265 77 88 chr6 28092222 28092573 -154322669 - MLT1J LTR MaLR -46 465 119 2731 215 34 32 chr6 28092820 28093489 -154321753 - LTR27 LTR ERV1 0 802 2 854 140 180 181 chr6 28094354 28094699 -154320543 + MER57B LTR ERV1 50 403 0 1734 125 16 46 chr6 28094992 28095297 -154319945 - AluSx SINE Alu -16 296 1 774 162 95 7 chr6 28095391 28095539 -154319703 - MER88 LTR ERVL 0 464 304 813 165 0 15 chr6 28095861 28095994 -154319248 + FLAM_C SINE Alu 2 132 -1 874 126 21 7 chr6 28096734 28096877 -154318365 + MER4E LTR ERV1 630 774 -5 351 136 0 0 chr6 28097317 28097376 -154317866 + (TTC)n Simple_repeat Simple_repeat 1 59 0 632 120 162 34 chr6 28097466 28097583 -154317659 - FLAM_C SINE Alu -11 132 1 284 233 0 55 chr6 28100120 28100193 -154315049 - MER63 DNA MER1_type -3 1059 991 330 209 0 0 chr6 28100195 28100262 -154314980 - MER63 DNA MER1_type -97 739 673 2158 103 3 0 chr6 28100331 28100621 -154314621 - AluSp SINE Alu -22 291 1 207 0 0 0 chr6 28101055 28101078 -154314164 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 309 278 72 0 chr6 28101078 28101175 -154314067 - MIR SINE MIR -67 141 38 811 271 88 51 chr6 28101508 28101877 -154313365 + LTR16A LTR ERVL 5 400 -50 353 190 140 70 chr6 28101903 28101966 -154313276 + Charlie1 DNA MER1_type 1 75 -448 1993 102 67 0 chr6 28101966 28102249 -154312993 - AluSx SINE Alu -10 302 1 353 190 140 70 chr6 28102249 28102285 -154312957 + Charlie1 DNA MER1_type 75 107 -416 1824 148 0 10 chr6 28102286 28102584 -154312658 + AluJb SINE Alu 1 295 -17 496 126 0 46 chr6 28102584 28102671 -154312571 + AluJo SINE Alu 52 134 -178 588 165 45 30 chr6 28102684 28102817 -154312425 + Charlie1 DNA MER1_type 100 234 -2527 1817 138 24 3 chr6 28102830 28103121 -154312121 + AluSx SINE Alu 1 297 -15 1669 181 0 3 chr6 28103125 28103424 -154311818 - AluJb SINE Alu -14 298 1 690 192 8 0 chr6 28103424 28103549 -154311693 + Charlie1 DNA MER1_type 2636 2761 0 1552 186 23 75 chr6 28103671 28103754 -154311488 + L1M4 LINE L1 7 93 -6449 2105 104 3 3 chr6 28103754 28104051 -154311191 + AluSp SINE Alu 1 297 -16 1552 186 23 75 chr6 28104051 28104354 -154310888 + L1M4 LINE L1 93 373 -6169 889 244 96 96 chr6 28104354 28104929 -154310313 - MER34C LTR ERV1 0 585 11 1635 214 17 53 chr6 28104939 28105294 -154309948 + L1M4 LINE L1 370 711 -5831 183 42 0 0 chr6 28105747 28105771 -154309471 + (GA)n Simple_repeat Simple_repeat 1 24 0 197 277 30 89 chr6 28106493 28106523 -154308719 + MIR3 SINE MIR 78 108 -100 1853 163 41 30 chr6 28106523 28106892 -154308350 - THE1C LTR MaLR -2 373 1 197 277 30 89 chr6 28106892 28106962 -154308280 + MIR3 SINE MIR 108 172 -36 181 214 0 48 chr6 28107003 28107045 -154308197 - MIR SINE MIR -64 198 159 1108 178 15 5 chr6 28107049 28107274 -154307968 - AluJo SINE Alu 0 312 86 527 257 69 61 chr6 28107410 28107825 -154307417 - MLT1H LTR MaLR 0 549 72 201 74 0 0 chr6 28108724 28108751 -154306491 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1813 150 0 17 chr6 28108966 28109266 -154305976 + AluSx SINE Alu 1 295 -17 263 313 43 17 chr6 28109274 28109389 -154305853 - MLT1-int LTR MaLR -835 536 419 1395 233 57 20 chr6 28109501 28109853 -154305389 - MER21B LTR ERV1 -23 840 476 26 0 0 0 chr6 28109856 28109882 -154305360 + AT_rich Low_complexity Low_complexity 1 26 0 1110 211 104 123 chr6 28109901 28110099 -154305143 - MER21B LTR ERV1 -371 492 292 1330 175 183 23 chr6 28110099 28110487 -154304755 + LTR7 LTR ERV1 1 450 0 1110 211 104 123 chr6 28110487 28110790 -154304452 - MER21B LTR ERV1 -571 292 1 253 269 28 64 chr6 28110920 28111061 -154304181 - MLT1E LTR MaLR 0 593 458 888 114 0 15 chr6 28111247 28111378 -154303864 + AluJ SINE Alu 5 133 -169 1336 131 5 22 chr6 28111378 28111538 -154303704 + AluSg/x SINE Alu 86 242 -70 3963 109 24 2 chr6 28111538 28112090 -154303152 - LTR6A LTR ERV1 0 564 1 1336 131 5 22 chr6 28112090 28112151 -154303091 + AluSg/x SINE Alu 242 303 -9 689 180 158 0 chr6 28112152 28112291 -154302951 + AluJ SINE Alu 136 296 -16 2039 116 0 0 chr6 28113172 28113466 -154301776 + AluSx SINE Alu 1 294 -18 1279 211 107 28 chr6 28113508 28113811 -154301431 + MER90 LTR ERV1 1 404 -210 1794 159 32 0 chr6 28113811 28114104 -154301138 + AluJb SINE Alu 1 293 -19 1279 211 107 28 chr6 28114104 28114241 -154301001 + MER90 LTR ERV1 404 529 -85 626 152 9 9 chr6 28115789 28115894 -154299348 + FLAM_A SINE Alu 4 108 -34 214 240 40 0 chr6 28116005 28116055 -154299187 + MER5A DNA MER1_type 60 111 -78 519 263 157 59 chr6 28116077 28116606 -154298636 + HAL1 LINE L1 1891 2471 -36 2102 125 21 0 chr6 28116732 28117020 -154298222 + AluSx SINE Alu 1 294 -18 201 178 56 111 chr6 28117025 28117115 -154298127 - L2 LINE L2 -1342 1972 1888 2138 123 7 3 chr6 28118124 28118425 -154296817 + AluSx SINE Alu 1 302 -10 202 250 17 33 chr6 28118697 28118757 -154296485 - L2 LINE L2 -568 2746 2688 226 235 82 12 chr6 28118935 28119020 -154296222 + L1P LINE L1 5317 5407 -747 21 0 0 0 chr6 28119033 28119054 -154296188 + AT_rich Low_complexity Low_complexity 1 21 0 2123 115 3 11 chr6 28119188 28119497 -154295745 + AluSx SINE Alu 1 307 0 253 261 134 63 chr6 28119498 28119640 -154295602 + L1ME LINE L1 5605 5756 -365 24 53 0 0 chr6 28119796 28119834 -154295408 + AT_rich Low_complexity Low_complexity 1 38 0 431 210 72 83 chr6 28120098 28120279 -154294963 - MIR SINE MIR 0 262 84 2172 89 7 0 chr6 28120869 28121172 -154294070 + AluSg SINE Alu 1 305 0 2225 136 59 15 chr6 28122285 28122676 -154292566 - MER83 LTR ERV1 0 448 41 255 284 154 24 chr6 28122804 28122973 -154292269 - L1ME LINE L1 -236 5885 5695 714 195 47 7 chr6 28123288 28123437 -154291805 + FRAM SINE Alu 11 165 -11 1748 135 76 17 chr6 28123440 28123729 -154291513 + AluSx SINE Alu 5 310 -2 312 110 27 14 chr6 28123847 28123920 -154291322 + (TA)n Simple_repeat Simple_repeat 2 75 0 1597 162 87 0 chr6 28124733 28124999 -154290243 - AluJo SINE Alu -23 289 1 1871 163 0 14 chr6 28125664 28125958 -154289284 - AluSx SINE Alu -20 292 3 2386 73 0 20 chr6 28126071 28126373 -154288869 + AluY SINE Alu 1 296 -15 2206 121 0 0 chr6 28127173 28127462 -154287780 + AluSx SINE Alu 1 289 -23 1875 138 14 10 chr6 28127675 28127966 -154287276 + AluSx SINE Alu 1 292 -20 2276 110 37 103 chr6 28130905 28130975 -154284267 - MSTA LTR MaLR -2 426 353 2447 91 0 0 chr6 28130975 28131282 -154283960 + AluSg SINE Alu 1 307 -3 2276 110 37 103 chr6 28131282 28131525 -154283717 - MSTA LTR MaLR -75 353 150 2199 82 14 24 chr6 28131525 28131819 -154283423 + AluSx SINE Alu 1 291 -21 2276 110 37 103 chr6 28131819 28131960 -154283282 - MSTA LTR MaLR -278 150 1 827 226 0 18 chr6 28132174 28132338 -154282904 + MER21B LTR ERV1 332 492 -371 23 0 0 0 chr6 28132941 28132964 -154282278 + AT_rich Low_complexity Low_complexity 1 23 0 1918 143 0 7 chr6 28133260 28133581 -154281661 + AluSx SINE Alu 1 319 0 255 265 133 0 chr6 28134278 28134376 -154280866 - L1ME4a LINE L1 -76 6045 5935 318 127 42 0 chr6 28134389 28134460 -154280782 + (TA)n Simple_repeat Simple_repeat 2 75 0 222 210 310 10 chr6 28134601 28134701 -154280541 + MER5A DNA MER1_type 55 184 -5 2246 111 7 0 chr6 28134791 28135097 -154280145 + AluSx SINE Alu 2 309 -3 497 314 66 22 chr6 28135163 28135389 -154279853 - MIR SINE MIR -7 255 20 761 329 81 7 chr6 28135809 28136265 -154278977 + L2 LINE L2 2203 2692 -622 516 81 0 0 chr6 28136268 28136342 -154278900 + (GTTTG)n Simple_repeat Simple_repeat 2 75 0 2358 101 0 0 chr6 28136358 28136666 -154278576 + AluSc SINE Alu 1 308 -1 245 125 0 0 chr6 28136680 28136712 -154278530 - Alu SINE Alu -20 281 250 974 105 0 0 chr6 28136722 28136855 -154278387 - FLAM_C SINE Alu 0 133 1 415 267 149 76 chr6 28136855 28137418 -154277824 + L2 LINE L2 2687 3296 -17 475 120 0 0 chr6 28137628 28137703 -154277539 + MER53 DNA DNA 107 181 -8 261 180 0 0 chr6 28137986 28138036 -154277206 + MLT1I LTR MaLR 91 140 -269 310 253 0 0 chr6 28138183 28138270 -154276972 + G-rich Low_complexity Low_complexity 1 87 0 2027 96 11 21 chr6 28138270 28138551 -154276691 - AluSq SINE Alu -35 278 1 2129 112 0 33 chr6 28138579 28138883 -154276359 - AluSq SINE Alu -19 294 1 542 235 142 27 chr6 28138907 28139090 -154276152 + AluJo SINE Alu 85 288 -24 38 22 0 0 chr6 28139250 28139295 -154275947 + AT_rich Low_complexity Low_complexity 1 45 0 2263 87 0 3 chr6 28139305 28139593 -154275649 + AluSq SINE Alu 2 288 -25 693 120 0 10 chr6 28139593 28139693 -154275549 - U6 snRNA snRNA -8 99 1 520 206 7 73 chr6 28139729 28139865 -154275377 + L2 LINE L2 3183 3309 -4 1339 108 5 18 chr6 28140012 28140234 -154275008 - L1MA8 LINE L1 -3 6288 6070 184 292 92 0 chr6 28140237 28140302 -154274940 - MER5A DNA MER1_type -77 112 42 262 314 0 67 chr6 28140393 28140498 -154274744 - MIR SINE MIR -84 124 27 270 176 0 0 chr6 28140686 28140737 -154274505 - L1ME3A LINE L1 0 6170 6120 298 107 18 62 chr6 28141051 28141163 -154274079 + (CCCCG)n Simple_repeat Simple_repeat 2 108 0 739 0 0 0 chr6 28141442 28141525 -154273717 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 15641 158 69 43 chr6 28141952 28145592 -154269650 - MER109 Unknown Unknown 0 2432 -1114 2373 100 0 0 chr6 28145592 28145892 -154269350 + AluSc SINE Alu 1 300 -9 15641 158 69 43 chr6 28145892 28146534 -154268708 - MER109 Unknown Unknown -3546 4294966182 150 2420 78 0 3 chr6 28146534 28146827 -154268415 + AluSc SINE Alu 1 292 -17 15641 158 69 43 chr6 28146827 28146982 -154268260 - MER109 Unknown Unknown -2281 151 1 641 297 5 14 chr6 28148645 28148857 -154266385 + MIR SINE MIR 40 249 -13 209 135 19 0 chr6 28148924 28148976 -154266266 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1289 246 133 21 chr6 28148983 28149343 -154265899 - MLT2B1 LTR ERVL -45 475 58 1859 140 0 31 chr6 28149343 28149635 -154265607 - AluJo SINE Alu -29 283 1 1289 246 133 21 chr6 28149635 28149701 -154265541 - MLT2B1 LTR ERVL -462 58 1 345 269 39 0 chr6 28149701 28149805 -154265437 - L2 LINE L2 -32 3240 3133 198 299 42 90 chr6 28150107 28150251 -154264991 + L2 LINE L2 2915 3051 -221 1195 176 18 40 chr6 28150310 28150537 -154264705 - AluJb SINE Alu -90 222 1 1513 179 3 48 chr6 28150572 28150885 -154264357 + AluJo SINE Alu 1 299 -13 2164 89 7 0 chr6 28150898 28151200 -154264042 + AluSx SINE Alu 1 304 0 2480 93 0 0 chr6 28151822 28152134 -154263108 + AluSx SINE Alu 1 312 0 679 0 0 0 chr6 28153151 28153225 -154262017 - tRNA-Thr-ACT tRNA tRNA -3 74 1 240 35 0 0 chr6 28153971 28153979 -154261263 + (TG)n Simple_repeat Simple_repeat 1 37 0 240 35 0 0 chr6 28153979 28154008 -154261234 + (TG)n Simple_repeat Simple_repeat 2 30 0 2612 43 0 3 chr6 28154431 28154733 -154260509 + AluY SINE Alu 1 301 -10 1483 158 78 14 chr6 28155290 28155574 -154259668 + MLT2C1 LTR ERVL 10 311 -86 2142 73 59 7 chr6 28155711 28155998 -154259244 - AluSq SINE Alu -11 302 1 1836 60 5 0 chr6 28156189 28156406 -154258836 + AluSp SINE Alu 85 302 -11 505 212 29 51 chr6 28156407 28156544 -154258698 + Charlie4 DNA MER1_type 1811 1944 -17 654 14 0 0 chr6 28157732 28157805 -154257437 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 686 0 0 0 chr6 28158288 28158362 -154256880 + tRNA-Val-GTG tRNA tRNA 1 74 -2 2057 113 44 3 chr6 28159512 28159805 -154255437 - AluSx SINE Alu -7 305 1 258 105 0 0 chr6 28159869 28159907 -154255335 + (A)n Simple_repeat Simple_repeat 1 38 0 2374 105 3 0 chr6 28160563 28160867 -154254375 - AluSx SINE Alu -6 306 2 2105 91 51 0 chr6 28161290 28161565 -154253677 - AluSg SINE Alu -21 289 1 1588 151 26 4 chr6 28161596 28161868 -154253374 - MLT1B LTR MaLR 0 390 113 1525 159 28 40 chr6 28162437 28162764 -154252478 - L1MC2 LINE L1 -10 6334 6012 887 83 0 0 chr6 28163656 28163765 -154251477 - AluSg/x SINE Alu -12 297 189 2056 75 0 30 chr6 28163765 28164030 -154251212 + AluSx SINE Alu 53 309 -3 981 307 58 43 chr6 28164442 28165369 -154249873 - L1ME3A LINE L1 -96 6025 5083 1373 254 78 80 chr6 28166489 28167430 -154247812 - L1ME3A LINE L1 -1055 5091 4153 2380 92 3 0 chr6 28167464 28167770 -154247472 - AluSx SINE Alu -5 307 1 1893 105 37 54 chr6 28167781 28168075 -154247167 - AluSx SINE Alu -21 291 3 181 247 240 19 chr6 28168076 28168230 -154247012 - L2 LINE L2 -563 2751 2564 188 333 83 0 chr6 28168264 28168372 -154246870 + MIR SINE MIR 90 206 -56 2361 90 0 10 chr6 28168791 28169101 -154246141 + AluSx SINE Alu 1 307 -5 261 299 34 8 chr6 28169199 28169316 -154245926 - L2 LINE L2 -219 3053 2934 2284 87 6 13 chr6 28169648 28169960 -154245282 - AluSq SINE Alu -3 310 1 3348 113 84 6 chr6 28170096 28170610 -154244632 - MER41C LTR ERV1 0 554 1 619 71 0 12 chr6 28170637 28170721 -154244521 + AluSg/x SINE Alu 215 297 -12 1201 224 75 35 chr6 28171122 28171414 -154243828 - Charlie4a DNA MER1_type -1456 505 191 2325 75 20 0 chr6 28171414 28171708 -154243534 - AluY SINE Alu -11 300 1 1201 224 75 35 chr6 28171708 28171813 -154243429 - Charlie4a DNA MER1_type -1770 191 92 441 266 71 7 chr6 28171812 28171966 -154243276 - MER112 DNA MER1_type -96 164 1 * 1192 163 92 0 chr6 28172328 28172567 -154242675 + Tigger7 DNA MER2_type 7 267 -2220 555 129 75 11 chr6 28172565 28172658 -154242584 + Tigger7 DNA MER2_type 2389 2487 0 * 398 200 0 0 chr6 28172710 28172780 -154242462 - tRNA-Lys-AAA tRNA tRNA -1 75 6 584 81 11 0 chr6 28173000 28173087 -154242155 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 639 14 0 0 chr6 28173737 28173809 -154241433 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 668 0 0 0 chr6 28174356 28174430 -154240812 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 258 304 43 22 chr6 28175178 28175270 -154239972 - MER5A DNA MER1_type -40 149 56 203 295 57 38 chr6 28175182 28175287 -154239955 + MER5A DNA MER1_type 55 161 -28 * 643 0 0 0 chr6 28175504 28175576 -154239666 + tRNA-Pro-CCT tRNA tRNA 1 72 -3 252 77 0 0 chr6 28175720 28175759 -154239483 + (T)n Simple_repeat Simple_repeat 1 39 0 665 0 0 0 chr6 28176780 28176854 -154238388 + tRNA-Lys-AAG tRNA tRNA 1 74 -2 223 264 0 0 chr6 28177363 28177416 -154237826 + MER5B DNA MER1_type 17 69 -109 941 266 169 3 chr6 28177630 28178002 -154237240 - L2 LINE L2 -432 2882 2449 664 157 45 15 chr6 28178317 28178451 -154236791 - FLAM_C SINE Alu -1 142 5 1967 154 0 0 chr6 28178608 28178906 -154236336 + AluJb SINE Alu 1 298 -14 435 139 28 0 chr6 28179187 28179259 -154235983 + U3 snRNA snRNA 1 74 -143 1934 125 0 77 chr6 28179375 28179688 -154235554 + AluJo SINE Alu 1 289 -23 2655 23 7 3 chr6 28179695 28179999 -154235243 + AluY SINE Alu 1 305 -6 2310 108 7 0 chr6 28180096 28180393 -154234849 + AluSq SINE Alu 1 299 -14 2030 130 32 0 chr6 28180400 28180685 -154234557 + AluSx SINE Alu 2 295 -17 259 277 64 0 chr6 28180787 28180881 -154234361 + L1MC5 LINE L1 7269 7368 -593 426 275 72 72 chr6 28180938 28181371 -154233871 + L1MC4 LINE L1 7610 8042 0 1206 146 150 5 chr6 28181704 28181924 -154233318 + AluSq SINE Alu 1 252 -61 1948 234 4 37 chr6 28181924 28182382 -154232860 - LTR2 LTR ERV1 0 449 7 228 163 0 0 chr6 28182419 28182462 -154232780 + A-rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 28183126 28183148 -154232094 + AT_rich Low_complexity Low_complexity 1 22 0 1258 162 27 18 chr6 28183422 28183644 -154231598 + THE1C LTR MaLR 1 224 -151 1288 132 0 64 chr6 28184024 28184114 -154231128 - AluJb SINE Alu -17 295 201 2332 97 102 0 chr6 28184114 28184456 -154230786 + MER51B LTR ERV1 1 377 0 1288 132 0 64 chr6 28184456 28184584 -154230658 - AluJb SINE Alu -111 201 91 2279 83 0 10 chr6 28184584 28184874 -154230368 + AluSg SINE Alu 9 295 -15 818 136 8 205 chr6 28184912 28185170 -154230072 + AluJo SINE Alu 87 293 -19 186 216 0 0 chr6 28186009 28186046 -154229196 + L2 LINE L2 3236 3272 0 2309 40 29 0 chr6 28186106 28186415 -154228827 - AluY SINE Alu 0 319 3 748 202 5 94 chr6 28186594 28186797 -154228445 - MER20 DNA MER1_type -18 201 17 1663 144 3 30 chr6 28186847 28187146 -154228096 - AluJo SINE Alu -21 291 1 829 199 110 16 chr6 28187241 28187487 -154227755 + LTR37B LTR ERV1 199 467 -1 1974 121 9 19 chr6 28187823 28188138 -154227104 - AluSx SINE Alu 0 312 1 1955 127 3 33 chr6 28188365 28188672 -154226570 + AluSx SINE Alu 1 298 -14 501 22 0 198 chr6 28189092 28189183 -154226059 + tRNA-Tyr-TAC tRNA tRNA 1 73 -3 308 285 200 8 chr6 28189714 28189844 -154225398 + MER5B DNA MER1_type 24 178 0 2149 108 0 0 chr6 28190393 28190681 -154224561 - AluSx SINE Alu -24 288 1 252 0 0 0 chr6 28190683 28190711 -154224531 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr6 28190928 28190948 -154224294 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2289 86 6 16 chr6 28190987 28191300 -154223942 - AluSq SINE Alu -3 310 1 2136 100 36 0 chr6 28191443 28191744 -154223498 + AluSx SINE Alu 1 312 0 612 27 0 0 chr6 28192097 28192170 -154223072 - tRNA-Ala-GCA tRNA tRNA -3 73 1 2374 89 3 6 chr6 28192660 28192973 -154222269 + AluSx SINE Alu 1 312 0 187 178 0 67 chr6 28193210 28193255 -154221987 - L2 LINE L2 -22 3250 3209 2029 135 7 0 chr6 28193670 28193967 -154221275 + AluSx SINE Alu 1 299 -13 1056 150 35 55 chr6 28194355 28194555 -154220687 + AluJb SINE Alu 104 299 -13 254 108 0 0 chr6 28194591 28194628 -154220614 + LTR50 LTR ERVL 6 42 -753 1409 205 86 18 chr6 28194628 28194963 -154220279 + MLT1A2 LTR MaLR 1 358 -16 1112 206 7 136 chr6 28194963 28195302 -154219940 + MLT1A1 LTR MaLR 1 279 -86 1783 126 35 0 chr6 28195302 28195556 -154219686 - AluSx SINE Alu -20 292 30 1112 206 7 136 chr6 28195556 28195628 -154219614 + MLT1A1 LTR MaLR 279 359 -6 503 33 0 187 chr6 28195803 28195894 -154219348 + tRNA-Tyr-TAC tRNA tRNA 1 74 -2 384 271 181 16 chr6 28195989 28196177 -154219065 + LTR50 LTR ERVL 42 260 -535 499 33 0 178 chr6 28197337 28197427 -154217815 + tRNA-Tyr-TAC tRNA tRNA 1 74 -2 1418 155 66 56 chr6 28197993 28198324 -154216918 - AluJb SINE Alu 0 312 1 5480 197 14 37 chr6 28198375 28199350 -154215892 - L1PA16 LINE L1 -1 6165 5169 1945 175 0 0 chr6 28199350 28199658 -154215584 - AluSx SINE Alu -4 308 1 5480 197 14 37 chr6 28199658 28200201 -154215041 - L1PA16 LINE L1 -997 5169 4615 2278 115 0 0 chr6 28200201 28200505 -154214737 - AluSx SINE Alu -8 304 1 5480 197 14 37 chr6 28200505 28200989 -154214253 - L1PA16 LINE L1 -1551 4615 4176 2252 109 7 0 chr6 28200989 28201292 -154213950 - AluSp SINE Alu -8 305 1 5480 197 14 37 chr6 28201292 28201349 -154213893 - L1PA16 LINE L1 -1990 4176 4119 230 228 89 25 chr6 28201848 28201927 -154213315 + L2 LINE L2 1548 1631 -1683 4430 186 87 9 chr6 28201961 28202870 -154212372 + MER45B DNA AcHobo 1 980 -60 613 187 28 0 chr6 28202903 28203010 -154212232 - FLAM_A SINE Alu -32 110 1 1749 169 30 7 chr6 28203020 28203322 -154211920 - AluJb SINE Alu -3 309 1 1992 261 89 22 chr6 28203327 28204151 -154211091 + L2 LINE L2 1827 2705 -609 207 0 0 0 chr6 28204168 28204191 -154211051 + (GGGTG)n Simple_repeat Simple_repeat 5 27 0 856 314 67 20 chr6 28204197 28204598 -154210644 - LTR16C LTR ERVL -38 453 34 2075 116 22 0 chr6 28204703 28204980 -154210262 + AluSx SINE Alu 1 283 -29 227 31 31 0 chr6 28204995 28205027 -154210215 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1005 226 30 162 chr6 28255855 28256216 -154159026 + MLT1E2 LTR MaLR 205 623 -3 2382 106 3 0 chr6 28256565 28256877 -154158365 - AluSp SINE Alu 0 313 1 809 140 0 0 chr6 28257079 28257193 -154158049 + AluSq/x SINE Alu 1 114 -199 2017 118 0 0 chr6 28257390 28257661 -154157581 + AluSx SINE Alu 1 271 -41 358 357 0 28 chr6 28258896 28259078 -154156164 + (CATA)n Simple_repeat Simple_repeat 4 180 0 * 387 350 18 0 chr6 28258953 28259116 -154156126 + (CATG)n Simple_repeat Simple_repeat 1 166 0 237 224 0 0 chr6 28259119 28259177 -154156065 + (CATA)n Simple_repeat Simple_repeat 4 61 0 194 240 27 0 chr6 28259238 28259313 -154155929 + (TATG)n Simple_repeat Simple_repeat 2 78 0 330 290 10 24 chr6 28259430 28259645 -154155597 + (TATG)n Simple_repeat Simple_repeat 1 211 0 * 365 339 28 11 chr6 28259571 28259748 -154155494 + (CATG)n Simple_repeat Simple_repeat 1 180 0 444 279 0 0 chr6 28259764 28259925 -154155317 + (CATA)n Simple_repeat Simple_repeat 2 162 0 270 265 13 13 chr6 28259959 28260110 -154155132 + (CATA)n Simple_repeat Simple_repeat 3 153 0 354 280 8 33 chr6 28260176 28260421 -154154821 + (CATA)n Simple_repeat Simple_repeat 1 239 0 3415 87 91 0 chr6 28260421 28260586 -154154656 - LTR66 LTR ERVL 0 610 461 504 48 0 0 chr6 28260586 28260649 -154154593 + (TA)n Simple_repeat Simple_repeat 2 64 0 3415 87 91 0 chr6 28260649 28260979 -154154263 - LTR66 LTR ERVL -149 461 70 1491 150 86 11 chr6 28260983 28261263 -154153979 + MSTA LTR MaLR 128 428 0 657 161 25 0 chr6 28262756 28262874 -154152368 - AluSc SINE Alu -3 306 186 306 275 148 82 chr6 28265574 28265974 -154149268 + L1ME4a LINE L1 5696 6121 0 2438 92 3 0 chr6 28265992 28266296 -154148946 - AluSp SINE Alu -8 305 1 468 259 35 7 chr6 28266392 28266535 -154148707 + L1M4 LINE L1 3627 3773 -2373 1291 201 36 3 chr6 28266548 28266857 -154148385 + L1M4 LINE L1 4071 4389 -1757 2769 126 10 43 chr6 28266874 28267366 -154147876 + L1MC1 LINE L1 5858 6333 0 2428 248 29 54 chr6 28267366 28267853 -154147389 + L1M4 LINE L1 3785 4283 -1863 2297 103 3 0 chr6 28267853 28268154 -154147088 + AluSp SINE Alu 1 302 -11 2428 248 29 54 chr6 28268154 28268648 -154146594 + L1M4 LINE L1 4283 4738 -1408 1848 114 53 0 chr6 28268648 28268911 -154146331 + AluSg SINE Alu 1 277 -33 2428 248 29 54 chr6 28268911 28269016 -154146226 + L1M4 LINE L1 4738 4844 -1302 2433 85 0 7 chr6 28269397 28269704 -154145538 + AluSg SINE Alu 1 305 -5 872 209 11 74 chr6 28270249 28270306 -154144936 + L1M4 LINE L1 4845 4904 -1242 1850 173 3 3 chr6 28270306 28270612 -154144630 - AluJo SINE Alu -2 310 5 872 209 11 74 chr6 28270612 28270837 -154144405 + L1M4 LINE L1 4904 5109 -1037 3767 231 52 9 chr6 28270849 28271238 -154144004 - L1M4 LINE L1 -788 5358 4987 2671 136 35 11 chr6 28271238 28271701 -154143541 + MER101 LTR ERV1 1 474 0 3767 231 52 9 chr6 28271701 28272471 -154142771 - L1M4 LINE L1 -1159 4987 4150 1059 157 42 46 chr6 28272472 28272733 -154142509 - L1MC3 LINE L1 -92 7693 7434 319 24 24 0 chr6 28272753 28272794 -154142448 - tRNA-Gln-CAA tRNA tRNA -26 49 8 296 244 25 17 chr6 28272806 28272925 -154142317 - L1M4 LINE L1 -1005 5141 5022 253 270 10 20 chr6 28272952 28273052 -154142190 - LTR65 LTR ERV1 -6 663 565 1617 155 25 22 chr6 28273359 28273637 -154141605 + AluJb SINE Alu 1 279 -33 1048 64 40 6 chr6 28273638 28273811 -154141431 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 25 83 0 0 chr6 28274079 28274139 -154141103 + AT_rich Low_complexity Low_complexity 1 60 0 2372 93 3 3 chr6 28274146 28274457 -154140785 - AluSp SINE Alu -1 312 2 5555 143 16 10 chr6 28274458 28275479 -154139763 - L1MC2 LINE L1 -13 6331 5305 832 66 9 0 chr6 28275490 28275596 -154139646 - AluYb8 SINE Alu -12 306 200 514 276 0 0 chr6 28275704 28275820 -154139422 - HAL1 LINE L1 -2191 316 201 23 33 0 0 chr6 28275825 28275855 -154139387 + AT_rich Low_complexity Low_complexity 1 30 0 1156 222 4 4 chr6 28275886 28276125 -154139117 - MER8 DNA MER2_type 0 239 1 1487 145 107 12 chr6 28276667 28277005 -154138237 - L1MD1 LINE L1 -8 6234 5865 2266 100 7 0 chr6 28277095 28277395 -154137847 - AluSp SINE Alu -11 302 1 2321 85 7 0 chr6 28277720 28278013 -154137229 - AluSp SINE Alu -18 295 1 1419 185 36 25 chr6 28278667 28278983 -154136259 + AluJb SINE Alu 1 319 0 940 113 7 0 chr6 28279096 28279238 -154136004 + MER4E LTR ERV1 1 143 -623 1664 158 67 0 chr6 28279617 28279901 -154135341 - AluJo SINE Alu -9 303 1 361 234 51 80 chr6 28279974 28280149 -154135093 - L1M4 LINE L1 -2859 3287 3118 751 63 0 0 chr6 28280163 28280258 -154134984 - AluSc SINE Alu -214 95 1 460 195 26 10 chr6 28286086 28286210 -154129032 + MIR SINE MIR 66 189 -65 1209 254 84 86 chr6 28286601 28287219 -154128023 + L2 LINE L2 1274 1890 -1424 1075 311 121 9 chr6 28287241 28287672 -154127570 + L2 LINE L2 2811 3289 -24 4691 158 26 66 chr6 28288419 28289429 -154125813 + LTR5 LTR ERVK 1 969 0 891 247 53 35 chr6 28289718 28290001 -154125241 + L2 LINE L2 2375 2662 -652 * 1165 304 87 28 chr6 28289980 28290453 -154124789 + L2 LINE L2 2813 3313 0 267 31 0 0 chr6 28291711 28291743 -154123499 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1649 83 32 24 chr6 28291743 28291996 -154123246 - L1PA10 LINE L1 -13 6155 5901 616 179 24 0 chr6 28292374 28292497 -154122745 + Tigger7 DNA MER2_type 2365 2490 -1 27 0 0 0 chr6 28292619 28292646 -154122596 + AT_rich Low_complexity Low_complexity 1 27 0 2245 85 3 0 chr6 28292677 28292984 -154122258 + AluSp SINE Alu 1 308 0 298 336 34 4 chr6 28293098 28293360 -154121882 + L1P LINE L1 2110 2379 -3767 490 335 105 27 chr6 28293397 28293986 -154121256 + L1MC4a LINE L1 2448 3093 -3053 351 148 0 18 chr6 28293989 28294057 -154121185 + FLAM_A SINE Alu 64 117 -16 766 177 0 0 chr6 28294065 28294178 -154121064 + FLAM_C SINE Alu 6 118 -25 798 318 63 32 chr6 28294199 28294766 -154120476 + L1MC4a LINE L1 3106 3690 -2456 1013 157 6 29 chr6 28294785 28294957 -154120285 - FRAM SINE Alu -16 160 1 774 276 92 50 chr6 28294969 28295796 -154119446 + L1MC4a LINE L1 3743 4604 -1542 752 199 129 11 chr6 28295823 28296009 -154119233 + MER58A DNA MER1_type 2 209 -15 301 344 31 14 chr6 28296179 28296473 -154118769 + L1MC4a LINE L1 4796 5094 -1052 315 0 0 0 chr6 28296528 28296544 -154118698 + (TG)n Simple_repeat Simple_repeat 1 51 0 315 0 0 0 chr6 28296544 28296579 -154118663 + (TG)n Simple_repeat Simple_repeat 2 36 0 2371 88 3 0 chr6 28296598 28296895 -154118347 - AluSp SINE Alu -10 303 6 560 177 78 35 chr6 28296918 28297156 -154118086 + L1MC4a LINE L1 5189 5428 -743 3747 220 53 41 chr6 28297167 28298156 -154117086 + L1MC/D LINE L1 3966 4942 -1204 2323 141 38 34 chr6 28298156 28298630 -154116612 + L1MA8 LINE L1 5814 6289 -2 3747 220 53 41 chr6 28298630 28298744 -154116498 + L1MC/D LINE L1 4942 5053 -1093 1754 161 3 7 chr6 28298744 28299029 -154116213 - AluSx SINE Alu -25 287 4 3747 220 53 41 chr6 28299029 28299263 -154115979 + L1MC/D LINE L1 5053 5320 -826 687 97 0 0 chr6 28299305 28299398 -154115844 + AluS SINE Alu 1 93 -219 1076 131 10 116 chr6 28299534 28299821 -154115421 + L1MC1 LINE L1 6096 6342 0 572 233 8 0 chr6 28299816 28299949 -154115293 + L1MC/D LINE L1 5423 5556 -2252 * 5361 222 99 54 chr6 28299954 28302150 -154113092 + L1MC4a LINE L1 5404 7697 -111 302 44 22 22 chr6 28302162 28302207 -154113035 + L1MC4 LINE L1 7805 7849 -193 419 202 65 48 chr6 28302208 28302332 -154112910 - MER105 DNA DNA -1 203 78 702 130 15 123 chr6 28302366 28302427 -154112815 + L1MC4 LINE L1 7863 7929 -113 1660 194 83 21 chr6 28302427 28302799 -154112443 + MSTD LTR MaLR 1 395 -1 702 130 15 123 chr6 28302799 28302952 -154112290 + L1MC4 LINE L1 7929 8042 0 364 298 187 15 chr6 28303017 28303215 -154112027 + MIR SINE MIR 31 262 0 941 257 146 28 chr6 28303768 28303784 -154111458 + L2 LINE L2 2700 2713 -600 2359 74 0 10 chr6 28303784 28304083 -154111159 + AluY SINE Alu 1 296 -15 941 257 146 28 chr6 28304083 28304498 -154110744 + L2 LINE L2 2713 3259 -54 231 368 9 19 chr6 28304611 28304717 -154110525 + L2 LINE L2 2980 3084 -188 652 295 30 15 chr6 28304915 28305115 -154110127 - MIR SINE MIR -57 205 3 721 258 140 0 chr6 28307480 28307701 -154107541 - MIR SINE MIR -3 259 8 303 300 49 114 chr6 28307874 28307924 -154107318 - L2 LINE L2 -5 3267 3215 2156 101 37 0 chr6 28307924 28308220 -154107022 + AluSp SINE Alu 1 307 -6 303 300 49 114 chr6 28308220 28308476 -154106766 - L2 LINE L2 -57 3215 2981 564 180 0 10 chr6 28308746 28308846 -154106396 + FLAM_A SINE Alu 2 100 -42 695 134 81 70 chr6 28309064 28309250 -154105992 + MER53 DNA DNA 1 188 -1 2244 120 3 0 chr6 28310379 28310688 -154104554 - AluSx SINE Alu -2 310 1 2189 113 0 0 chr6 28310688 28310978 -154104264 - AluSx SINE Alu -21 291 1 235 346 0 19 chr6 28311156 28311263 -154103979 + MIR SINE MIR 152 256 -6 1729 171 3 46 chr6 28311271 28311576 -154103666 + AluJb SINE Alu 6 297 -15 1776 165 20 3 chr6 28311586 28311883 -154103359 + MER1A DNA MER1_type 1 302 -227 1457 115 21 8 chr6 28311976 28312210 -154103032 + MER1A DNA MER1_type 297 533 0 243 231 10 58 chr6 28312299 28312403 -154102839 + T-rich Low_complexity Low_complexity 4 102 0 1719 170 87 3 chr6 28313244 28313555 -154101687 - MER1B DNA MER1_type 0 337 1 1506 211 79 67 chr6 28313569 28314063 -154101179 - MLT1D LTR MaLR 0 505 6 475 179 104 0 chr6 28314074 28314180 -154101062 + MER99 DNA DNA 709 825 -3 2617 105 11 5 chr6 28314484 28314857 -154100385 - THE1C LTR MaLR 0 375 1 234 0 0 0 chr6 28314939 28314965 -154100277 + (A)n Simple_repeat Simple_repeat 1 26 0 272 289 79 0 chr6 28315110 28315224 -154100018 + L1ME3A LINE L1 5510 5632 -538 2074 198 39 108 chr6 28315224 28315552 -154099690 - LTR8 LTR ERV1 0 691 342 1584 99 38 0 chr6 28315552 28315763 -154099479 - AluSg/x SINE Alu -9 303 85 243 0 0 0 chr6 28315769 28315796 -154099446 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2074 198 39 108 chr6 28315796 28316202 -154099040 - LTR8 LTR ERV1 -354 337 1 446 332 25 21 chr6 28316224 28316507 -154098735 + L1ME3A LINE L1 5657 5940 -230 225 154 0 0 chr6 28316504 28316543 -154098699 + (CATA)n Simple_repeat Simple_repeat 4 42 0 * 1070 172 25 17 chr6 28316545 28316906 -154098336 + MLT2A2 LTR ERVL 190 453 0 254 270 17 23 chr6 28316937 28317111 -154098131 + (CATA)n Simple_repeat Simple_repeat 3 175 0 195 229 24 24 chr6 28317149 28317232 -154098010 + (CATA)n Simple_repeat Simple_repeat 1 83 0 235 303 17 0 chr6 28317255 28317430 -154097812 + (CATA)n Simple_repeat Simple_repeat 2 179 0 * 243 173 0 0 chr6 28317395 28317447 -154097795 + (CATG)n Simple_repeat Simple_repeat 1 52 0 331 301 17 16 chr6 28317504 28317756 -154097486 + (CATATA)n Simple_repeat Simple_repeat 1 252 0 329 267 17 12 chr6 28317756 28317928 -154097314 + (CATA)n Simple_repeat Simple_repeat 4 176 0 289 301 78 0 chr6 28319459 28319562 -154095680 - MIR SINE MIR -108 154 44 185 94 31 0 chr6 28319827 28319859 -154095383 + (CA)n Simple_repeat Simple_repeat 2 34 0 32 26 0 0 chr6 28319862 28319901 -154095341 + AT_rich Low_complexity Low_complexity 1 39 0 530 110 0 0 chr6 28320194 28320267 -154094975 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2067 273 81 37 chr6 28320935 28322843 -154092399 + L1MDa LINE L1 1005 3034 -3506 224 265 0 0 chr6 28323125 28323174 -154092068 + L2 LINE L2 3220 3268 -4 1571 168 32 0 chr6 28323309 28323559 -154091683 + AluSx SINE Alu 23 280 -32 342 0 0 0 chr6 28323559 28323597 -154091645 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2191 125 0 0 chr6 28323607 28323912 -154091330 + AluSx SINE Alu 1 305 -7 220 344 32 34 chr6 28323990 28324144 -154091098 + MIR SINE MIR 3 149 -77 272 265 0 0 chr6 28324777 28324845 -154090397 + tRNA-Met-e tRNA tRNA 6 73 -2 679 60 30 0 chr6 28324967 28325067 -154090175 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 344 321 47 54 chr6 28325254 28325550 -154089692 - L2 LINE L2 -1 3312 3019 235 301 41 0 chr6 28326447 28326520 -154088722 - MIR SINE MIR -108 154 79 21 0 0 0 chr6 28327434 28327455 -154087787 + AT_rich Low_complexity Low_complexity 1 21 0 291 301 78 0 chr6 28327675 28327778 -154087464 - MIR SINE MIR -108 154 44 24 32 0 0 chr6 28327778 28327809 -154087433 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr6 28328448 28328482 -154086760 + (CA)n Simple_repeat Simple_repeat 1 34 0 194 0 39 0 chr6 28328935 28328961 -154086281 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 51 0 0 chr6 28328966 28329005 -154086237 + AT_rich Low_complexity Low_complexity 1 39 0 541 96 0 0 chr6 28329300 28329373 -154085869 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2158 256 78 51 chr6 28330041 28331352 -154083890 + L1MDa LINE L1 1005 2350 -4190 656 268 51 38 chr6 28331371 28331900 -154083342 + L1MDa LINE L1 2472 2968 -3572 246 284 78 29 chr6 28332216 28332318 -154082924 + L2 LINE L2 3162 3268 -4 1692 180 28 0 chr6 28332439 28332722 -154082520 + AluJb SINE Alu 1 291 -21 2141 123 0 0 chr6 28332734 28333034 -154082208 + AluSx SINE Alu 1 300 -12 282 290 63 35 chr6 28333117 28333268 -154081974 + MIR3 SINE MIR 3 149 -77 405 0 0 0 chr6 28333694 28333739 -154081503 + (CA)n Simple_repeat Simple_repeat 2 46 0 521 110 0 0 chr6 28334075 28334148 -154081094 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 248 152 65 0 chr6 28336161 28336207 -154079035 + MER66B LTR ERV1 297 345 -141 246 147 147 15 chr6 28336808 28336876 -154078366 + L2 LINE L2 3236 3312 -1 293 194 48 0 chr6 28337507 28337569 -154077673 - tRNA-His-CAC tRNA tRNA -10 65 1 300 318 173 23 chr6 28337954 28338168 -154077074 - L2 LINE L2 -103 3210 2965 23 0 0 0 chr6 28339476 28339499 -154075743 + AT_rich Low_complexity Low_complexity 1 23 0 14218 161 41 34 chr6 28339921 28344288 -154070954 + L1MA8 LINE L1 3314 7707 -3 352 263 0 0 chr6 28344346 28344422 -154070820 + tRNA-Val-GTT tRNA tRNA 1 76 0 291 158 0 0 chr6 28344874 28344931 -154070311 + tRNA-Ala-GCA tRNA tRNA 4 60 -16 1128 149 90 0 chr6 28345454 28345709 -154069533 + L1MB4 LINE L1 5903 6180 0 203 157 20 0 chr6 28346612 28346663 -154068579 + (TA)n Simple_repeat Simple_repeat 2 53 0 504 304 33 0 chr6 28346805 28347075 -154068167 + L1M4 LINE L1 2380 2658 -3488 246 297 16 0 chr6 28347314 28347378 -154067864 + L2 LINE L2 3204 3268 -4 444 135 14 0 chr6 28348306 28348380 -154066862 + tRNA-Met-e tRNA tRNA 1 75 0 252 244 165 35 chr6 28348698 28348813 -154066429 - L2 LINE L2 -1 3312 3183 350 0 44 0 chr6 28349490 28349535 -154065707 + (TAAAA)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chr6 28349651 28349671 -154065571 + (T)n Simple_repeat Simple_repeat 1 20 0 261 0 0 0 chr6 28351336 28351365 -154063877 + (CA)n Simple_repeat Simple_repeat 1 29 0 354 23 0 0 chr6 28351817 28351860 -154063382 + (CA)n Simple_repeat Simple_repeat 2 44 0 521 110 0 0 chr6 28352197 28352270 -154062972 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2075 266 81 43 chr6 28352946 28354869 -154060373 + L1MDa LINE L1 1005 3047 -3493 263 289 82 10 chr6 28355117 28355214 -154060028 + L2 LINE L2 3168 3271 -1 1568 163 0 4 chr6 28355332 28355583 -154059659 + AluSx SINE Alu 1 250 -62 515 56 14 0 chr6 28355606 28355677 -154059565 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 2070 97 41 17 chr6 28355692 28355982 -154059260 + AluSx SINE Alu 1 297 -15 198 0 0 0 chr6 28356179 28356201 -154059041 + (A)n Simple_repeat Simple_repeat 1 22 0 1888 120 0 13 chr6 28356207 28356506 -154058736 + AluY SINE Alu 1 295 -16 729 303 28 52 chr6 28356840 28357184 -154058058 + HAL1 LINE L1 461 796 -1711 1927 132 0 17 chr6 28357184 28357505 -154057737 - AluSx SINE Alu 0 316 1 729 303 28 52 chr6 28357505 28357581 -154057661 + HAL1 LINE L1 796 872 -1635 310 226 137 11 chr6 28357675 28357865 -154057377 + HAL1 LINE L1 1050 1263 -1244 1568 163 0 4 chr6 28358006 28358257 -154056985 + AluSx SINE Alu 1 250 -62 515 56 14 0 chr6 28358280 28358351 -154056891 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 2043 100 41 17 chr6 28358366 28358656 -154056586 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr6 28358853 28358876 -154056366 + (A)n Simple_repeat Simple_repeat 1 23 0 2320 66 0 10 chr6 28358881 28359186 -154056056 + AluY SINE Alu 1 302 -9 259 265 0 0 chr6 28359871 28359939 -154055303 + tRNA-Met-e tRNA tRNA 6 73 -2 826 143 12 0 chr6 28360070 28360231 -154055011 + CT-rich Low_complexity Low_complexity 2 164 0 277 292 57 7 chr6 28361597 28361714 -154053528 - MIR SINE MIR -61 147 32 378 0 0 0 chr6 28362357 28362399 -154052843 + (CA)n Simple_repeat Simple_repeat 2 43 0 430 164 0 0 chr6 28363157 28363230 -154052012 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 1976 255 121 42 chr6 28363810 28365301 -154049941 + L1ME LINE L1 783 2421 -3985 2099 122 0 3 chr6 28365301 28365596 -154049646 + AluSq SINE Alu 1 294 -19 1976 255 121 42 chr6 28365596 28366119 -154049123 + L1ME LINE L1 2421 2902 -3504 258 294 0 0 chr6 28366382 28366450 -154048792 + L2 LINE L2 3204 3271 -1 275 286 0 0 chr6 28367395 28367458 -154047784 + tRNA-Met-e tRNA tRNA 11 73 -2 292 353 25 47 chr6 28367804 28368039 -154047203 - L2 LINE L2 0 3313 3084 687 13 0 0 chr6 28370479 28370554 -154044688 - tRNA-Ile-ATT tRNA tRNA -2 75 1 248 186 0 0 chr6 28371962 28372005 -154043237 - tRNA-His-CAC tRNA tRNA -23 52 10 1188 101 10 10 chr6 28372022 28372220 -154043022 + LTR1 LTR ERV1 54 251 -534 181 297 135 27 chr6 28372735 28372809 -154042433 + MIR SINE MIR 60 141 -67 232 100 0 75 chr6 28372820 28372860 -154042382 + Charlie7 DNA MER1_type 1627 1663 -949 2659 42 0 6 chr6 28373168 28373481 -154041761 + AluY SINE Alu 1 311 0 267 318 45 26 chr6 28373564 28373718 -154041524 + MER110 LTR ERV1 320 476 -15 664 376 55 16 chr6 28374832 28375343 -154039899 + ERVL LTR ERVL 2547 3077 -2687 3828 234 68 70 chr6 28375356 28377055 -154038187 + L1ME LINE L1 4002 5690 -732 485 151 0 0 chr6 28377529 28377602 -154037640 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 8477 9 0 0 chr6 28379823 28381075 -154034167 - L1PA2 LINE L1 -2 6153 4902 659 40 0 0 chr6 28381153 28381228 -154034014 - tRNA-Ile-ATT tRNA tRNA -2 75 1 248 139 0 0 chr6 28382629 28382665 -154032577 - tRNA-His-CAC tRNA tRNA -23 52 17 1239 101 10 10 chr6 28382689 28382887 -154032355 + LTR1 LTR ERV1 54 251 -534 237 339 107 18 chr6 28383383 28383495 -154031747 + MIR3 SINE MIR 60 181 -27 690 373 55 16 chr6 28385120 28385632 -154029610 + ERVL LTR ERVL 2546 3077 -2687 3953 243 69 55 chr6 28385645 28387317 -154027925 + L1ME LINE L1 3742 5430 -732 449 178 0 0 chr6 28387796 28387869 -154027373 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 513 110 0 0 chr6 28388508 28388581 -154026661 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 207 323 0 0 chr6 28388913 28388975 -154026267 + L2 LINE L2 3168 3229 -84 1126 56 6 6 chr6 28389326 28389486 -154025756 + (TTC)n Simple_repeat Simple_repeat 2 161 0 211 218 0 18 chr6 28389742 28389797 -154025445 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 455 276 21 54 chr6 28389883 28390099 -154025143 + L1MC5 LINE L1 7258 7465 -496 1587 152 20 46 chr6 28390099 28390402 -154024840 + L1MC2 LINE L1 6050 6344 0 455 276 21 54 chr6 28390402 28390464 -154024778 + L1MC5 LINE L1 7465 7527 -434 1505 106 5 32 chr6 28391186 28391404 -154023838 + AluSx SINE Alu 40 251 -61 5859 130 30 15 chr6 28392127 28393081 -154022161 - LTR5 LTR ERVK 0 969 1 474 113 14 0 chr6 28394420 28394491 -154020751 - tRNA-Met-e tRNA tRNA -3 72 1 217 158 0 0 chr6 28394775 28394813 -154020429 + L2 LINE L2 3234 3271 -1 297 298 177 11 chr6 28394948 28395001 -154020241 - MIR SINE MIR -29 233 190 225 0 0 0 chr6 28395001 28395026 -154020216 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 297 298 177 11 chr6 28395026 28395153 -154020089 - MIR SINE MIR -72 190 23 182 250 96 77 chr6 28395394 28395498 -154019744 - L2 LINE L2 -11 3302 3197 985 157 143 30 chr6 28395603 28395833 -154019409 - MLT1B LTR MaLR 0 390 135 339 363 0 0 chr6 28396752 28396876 -154018366 + (CATATA)n Simple_repeat Simple_repeat 3 126 0 * 385 350 18 0 chr6 28396820 28397044 -154018198 + (CATG)n Simple_repeat Simple_repeat 1 228 0 249 261 0 0 chr6 28397104 28397192 -154018050 + (TATG)n Simple_repeat Simple_repeat 4 91 0 460 291 17 23 chr6 28397260 28397435 -154017807 + (TATG)n Simple_repeat Simple_repeat 2 175 0 311 344 31 12 chr6 28397460 28397620 -154017622 + (CATG)n Simple_repeat Simple_repeat 2 164 0 189 171 0 0 chr6 28397654 28397689 -154017553 + (CATG)n Simple_repeat Simple_repeat 2 36 0 219 280 13 13 chr6 28397781 28397931 -154017311 + (CATA)n Simple_repeat Simple_repeat 3 152 0 290 239 12 43 chr6 28397996 28398159 -154017083 + (CATA)n Simple_repeat Simple_repeat 2 159 0 1193 62 41 88 chr6 28398243 28398437 -154016805 - LTR66 LTR ERVL 0 610 426 1731 141 0 0 chr6 28398568 28398839 -154016403 - AluSx SINE Alu 0 306 36 2768 82 3 0 chr6 28398839 28399192 -154016050 - LTR66 LTR ERVL -187 423 70 1583 150 86 11 chr6 28399196 28399476 -154015766 + MSTA LTR MaLR 128 428 0 342 102 20 0 chr6 28400576 28400625 -154014617 - MSTB1 LTR MaLR -3 429 380 917 170 143 30 chr6 28400976 28401206 -154014036 + MLT1B LTR MaLR 135 390 0 192 206 110 82 chr6 28401308 28401381 -154013861 + L2 LINE L2 3155 3229 -43 200 231 0 19 chr6 28401502 28401554 -154013688 + L2 LINE L2 3217 3267 -5 282 286 181 22 chr6 28401654 28401781 -154013461 + MIR SINE MIR 23 189 -73 180 0 0 0 chr6 28401781 28401801 -154013441 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 282 286 181 22 chr6 28401801 28401855 -154013387 + MIR SINE MIR 189 233 -29 231 132 0 0 chr6 28401990 28402028 -154013214 - L2 LINE L2 -1 3271 3234 474 113 14 0 chr6 28402312 28402383 -154012859 + tRNA-Met-e tRNA tRNA 1 72 -3 183 80 0 0 chr6 28403411 28403436 -154011806 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 1666 77 122 28 chr6 28404385 28404632 -154010610 - AluSx SINE Alu -3 309 40 442 280 21 54 chr6 28405356 28405418 -154009824 - L1MC5 LINE L1 -434 7527 7465 1564 155 20 49 chr6 28405418 28405722 -154009520 - L1MC2 LINE L1 0 6344 6050 442 280 21 54 chr6 28405722 28405938 -154009304 - L1MC5 LINE L1 -496 7465 7258 616 87 0 19 chr6 28406339 28406442 -154008800 + (GAA)n Simple_repeat Simple_repeat 2 102 0 188 273 10 81 chr6 28406719 28406818 -154008424 - L2 LINE L2 -54 3259 3168 547 82 0 0 chr6 28407150 28407223 -154008019 - tRNA-Ala-GCA tRNA tRNA -3 73 1 1737 254 28 18 chr6 28459286 28459786 -153955456 + MLT1D LTR MaLR 1 505 0 2351 85 0 0 chr6 28459966 28460272 -153954970 - AluSx SINE Alu -6 306 1 215 210 32 16 chr6 28460674 28460736 -153954506 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 7347 13 0 0 chr6 28460802 28461640 -153953602 - L1PA2 LINE L1 0 6155 5318 29 84 0 0 chr6 28462370 28462441 -153952801 + AT_rich Low_complexity Low_complexity 1 71 0 470 322 9 57 chr6 28463151 28463362 -153951880 + MIR SINE MIR 2 202 -60 183 129 0 0 chr6 28463409 28463440 -153951802 + (GA)n Simple_repeat Simple_repeat 2 32 0 248 292 0 0 chr6 28463558 28463623 -153951619 - LTR16A1 LTR ERVL -2 455 391 1977 198 31 8 chr6 28464706 28465090 -153950152 - MSTD LTR MaLR -3 393 1 624 143 0 42 chr6 28465832 28465951 -153949291 + L1PA14 LINE L1 6044 6157 -4 47 53 0 0 chr6 28466027 28466102 -153949140 + AT_rich Low_complexity Low_complexity 1 75 0 33 25 0 0 chr6 28466311 28466351 -153948891 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr6 28467322 28467363 -153947879 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr6 28467434 28467454 -153947788 + (CA)n Simple_repeat Simple_repeat 2 21 0 1836 218 31 0 chr6 28467599 28467957 -153947285 + MLT2B3 LTR ERVL 133 501 -53 240 35 0 0 chr6 28467964 28467993 -153947249 + (TC)n Simple_repeat Simple_repeat 2 30 0 225 154 0 0 chr6 28467994 28468033 -153947209 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr6 28468217 28468249 -153946993 + AT_rich Low_complexity Low_complexity 1 32 0 363 212 0 0 chr6 28468591 28468657 -153946585 - U4 snRNA snRNA -79 66 1 25 31 0 0 chr6 28468727 28468759 -153946483 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr6 28470890 28470925 -153944317 + (TG)n Simple_repeat Simple_repeat 2 36 0 658 333 108 8 chr6 28470980 28471331 -153943911 - LTR16B LTR ERVL -31 433 48 1040 216 42 93 chr6 28471454 28471839 -153943403 + MLT1A1 LTR MaLR 1 365 0 1402 184 4 50 chr6 28471943 28472334 -153942908 - L1M LINE L1 -740 5428 5067 * 4066 196 26 32 chr6 28472317 28473235 -153942007 + L1MA10 LINE L1 5420 6332 -2 25 51 0 0 chr6 28473960 28473999 -153941243 + AT_rich Low_complexity Low_complexity 1 39 0 254 273 0 0 chr6 28474105 28474160 -153941082 - MLT1I LTR MaLR 0 409 355 283 316 38 23 chr6 28474291 28474424 -153940818 - MLT1I LTR MaLR -270 139 5 252 352 66 28 chr6 28474427 28474640 -153940602 - L3 LINE CR1 -921 656 436 1642 137 30 58 chr6 28474722 28475051 -153940191 - MER44D DNA MER2_type -12 597 8 338 302 39 8 chr6 28475127 28475256 -153939986 + MIR SINE MIR 81 213 -49 229 266 43 32 chr6 28475420 28475514 -153939728 - L1MC/D LINE L1 -2011 5797 5703 22 35 0 0 chr6 28475574 28475603 -153939639 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 28475777 28475807 -153939435 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 28475892 28475920 -153939322 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 28476215 28476244 -153938998 + AT_rich Low_complexity Low_complexity 1 29 0 256 253 77 0 chr6 28476300 28476391 -153938851 + MLT1I LTR MaLR 312 409 0 1802 127 0 4 chr6 28476690 28476958 -153938284 - AluSg SINE Alu -43 267 1 453 74 0 0 chr6 28476969 28477023 -153938219 - Alu SINE Alu -258 60 7 2346 78 13 7 chr6 28477423 28477729 -153937513 - AluY SINE Alu -3 308 1 2747 26 3 0 chr6 28478498 28478805 -153936437 + L1PA2 LINE L1 5846 6153 -2 1461 180 102 0 chr6 28478992 28479248 -153935994 + AluJb SINE Alu 1 282 -30 279 0 0 0 chr6 28479248 28479279 -153935963 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 1750 169 21 0 chr6 28479302 28479586 -153935656 + AluJb SINE Alu 1 290 -22 532 200 104 0 chr6 28479595 28479710 -153935532 - MER3 DNA MER1_type -61 148 22 1583 184 14 24 chr6 28479712 28479869 -153935373 - AluJb SINE Alu -21 291 137 2269 106 0 7 chr6 28479869 28480171 -153935071 - AluSg SINE Alu -10 300 1 1583 184 14 24 chr6 28480171 28480306 -153934936 - AluJb SINE Alu -175 137 2 1826 152 3 48 chr6 28480369 28480678 -153934564 + AluSx SINE Alu 1 295 -17 2194 128 3 0 chr6 28481006 28481312 -153933930 + AluSx SINE Alu 1 307 -5 182 355 76 72 chr6 28481351 28481627 -153933615 - L2 LINE L2 -3 3269 2993 1521 167 89 3 chr6 28481633 28481915 -153933327 + AluJo SINE Alu 1 306 -6 800 161 0 8 chr6 28481920 28482050 -153933192 + FLAM_C SINE Alu 7 135 -8 1740 179 0 0 chr6 28482290 28482587 -153932655 + AluJo SINE Alu 1 297 -15 1115 163 0 30 chr6 28483127 28483330 -153931912 + AluJo SINE Alu 24 220 -92 257 163 0 20 chr6 28483330 28483379 -153931863 + FLAM SINE Alu 86 133 0 486 179 84 21 chr6 28483719 28483814 -153931428 - AluSg/x SINE Alu -14 298 198 1220 118 0 0 chr6 28483815 28483976 -153931266 + AluSg/x SINE Alu 139 299 -13 2045 141 10 19 chr6 28483988 28484301 -153930941 + AluJo SINE Alu 3 312 0 230 283 111 20 chr6 28484311 28484410 -153930832 + MER5A DNA MER1_type 74 181 -8 * 269 211 0 0 chr6 28484402 28484459 -153930783 + MIR3 SINE MIR 147 203 -5 910 102 0 0 chr6 28484617 28484735 -153930507 + FLAM_C SINE Alu 1 118 -15 2029 154 3 0 chr6 28485055 28485402 -153929840 + AluSx SINE Alu 1 348 0 1486 174 43 46 chr6 28485800 28485923 -153929319 + AluJo SINE Alu 2 124 -188 1769 121 28 35 chr6 28485923 28486213 -153929029 + AluSg SINE Alu 1 288 -22 1486 174 43 46 chr6 28486213 28486394 -153928848 + AluJo SINE Alu 124 305 -7 257 268 179 18 chr6 28486457 28486569 -153928673 - L2 LINE L2 -205 3067 2938 2081 116 7 23 chr6 28486618 28486928 -153928314 - AluSx SINE Alu -7 305 1 1580 155 37 51 chr6 28487752 28487879 -153927363 + AluJo SINE Alu 1 128 -184 2011 128 10 0 chr6 28487879 28488168 -153927074 - AluSx SINE Alu -20 292 1 1580 155 37 51 chr6 28488168 28488336 -153926906 + AluJo SINE Alu 128 292 -20 279 0 0 0 chr6 28488339 28488370 -153926872 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2326 106 0 0 chr6 28488815 28489118 -153926124 - AluSg SINE Alu -7 303 1 1856 119 0 22 chr6 28489141 28489418 -153925824 - AluSx SINE Alu -3 309 39 1557 97 32 3 chr6 28489935 28490253 -153924989 + L1P4 LINE L1 5161 5485 -676 2267 95 0 7 chr6 28490254 28490550 -153924692 + AluSx SINE Alu 2 295 -17 2066 217 135 62 chr6 28490730 28490879 -153924363 + MER82 DNA MER2_type 1 138 -515 2095 114 0 34 chr6 28490879 28491177 -153924065 + AluSx SINE Alu 1 288 -24 2066 217 135 62 chr6 28491177 28491636 -153923606 + MER82 DNA MER2_type 138 653 0 247 313 30 30 chr6 28491828 28491962 -153923280 + MLT1H LTR MaLR 29 162 -387 949 150 17 56 chr6 28492305 28492485 -153922757 - FAM SINE Alu -5 44 1 416 252 50 8 chr6 28492546 28492665 -153922577 + MLT1G1 LTR MaLR 16 139 -456 2501 118 25 6 chr6 28492764 28493121 -153922121 + THE1B LTR MaLR 1 364 0 9831 101 60 42 chr6 28493122 28494667 -153920575 + THE1B-int LTR MaLR 2 1574 -6 1322 113 49 5 chr6 28494674 28494877 -153920365 + THE1B LTR MaLR 3 214 -150 799 177 15 0 chr6 28494886 28495016 -153920226 - FLAM_C SINE Alu -1 132 1 628 157 0 0 chr6 28495018 28495120 -153920122 - AluSp/q SINE Alu -2 311 210 202 130 0 65 chr6 28499745 28499791 -153915451 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 21 0 0 0 chr6 28500341 28500362 -153914880 + AT_rich Low_complexity Low_complexity 1 21 0 271 221 154 58 chr6 28500798 28500902 -153914340 + L2 LINE L2 3104 3217 -96 1710 171 66 0 chr6 28500908 28501212 -153914030 + MER2 DNA MER2_type 1 324 -21 1334 131 91 0 chr6 28501212 28501433 -153913809 + L1MA6 LINE L1 6056 6296 -4 23 33 0 0 chr6 28501449 28501479 -153913763 + AT_rich Low_complexity Low_complexity 1 30 0 1657 199 12 93 chr6 28501716 28501760 -153913482 + MLT1A2 LTR MaLR 1 47 -327 2519 58 3 13 chr6 28501760 28502068 -153913174 + AluY SINE Alu 1 305 -6 1657 199 12 93 chr6 28502068 28502361 -153912881 + MLT1A2 LTR MaLR 47 302 -72 1976 156 30 0 chr6 28502361 28502663 -153912579 - AluSx SINE Alu -1 311 1 1657 199 12 93 chr6 28502663 28502731 -153912511 + MLT1A2 LTR MaLR 302 374 0 1075 162 81 20 chr6 28502751 28502882 -153912360 + MER3 DNA MER1_type 1 149 -60 2552 53 0 0 chr6 28502882 28503181 -153912061 - AluY SINE Alu -12 299 1 1075 162 81 20 chr6 28503181 28503246 -153911996 + MER3 DNA MER1_type 149 209 0 636 215 107 51 chr6 28503744 28503943 -153911299 - MLT1F LTR MaLR 0 626 334 1436 155 38 91 chr6 28503944 28504176 -153911066 - MLT1A1 LTR MaLR 0 365 155 2181 117 0 25 chr6 28504176 28504493 -153910749 + AluSg SINE Alu 1 309 -1 1436 155 38 91 chr6 28504493 28504601 -153910641 - MLT1A1 LTR MaLR -210 155 43 541 293 13 0 chr6 28504809 28504959 -153910283 - MLT1F LTR MaLR -400 167 16 383 375 34 21 chr6 28506186 28506477 -153908765 + L2 LINE L2 1978 2272 -1042 21 0 0 0 chr6 28506882 28506903 -153908339 + AT_rich Low_complexity Low_complexity 1 21 0 256 302 94 9 chr6 28507298 28507404 -153907838 + L2 LINE L2 3158 3272 0 298 296 0 0 chr6 28509062 28509160 -153906082 + MIR SINE MIR 90 187 -75 2065 210 17 64 chr6 28509238 28509631 -153905611 + L1M2 LINE L1 2528 2938 -3910 2241 125 0 0 chr6 28509631 28509935 -153905307 + AluSg SINE Alu 1 304 -6 2065 210 17 64 chr6 28509935 28510451 -153904791 + L1M2 LINE L1 2938 3392 -3456 2696 191 47 2 chr6 28510451 28510979 -153904263 + L1PB4 LINE L1 5604 6155 -1 3398 228 61 19 chr6 28511137 28511565 -153903677 + L1MC3 LINE L1 6150 6559 -1226 2088 164 123 5 chr6 28511565 28511948 -153903294 + MSTA LTR MaLR 1 428 0 3398 228 61 19 chr6 28511948 28512450 -153902792 + L1MC3 LINE L1 6559 7119 -666 600 229 23 34 chr6 28512514 28512689 -153902553 + MER104 DNA Tc2 7 179 -1 360 219 0 0 chr6 28513504 28513586 -153901656 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 2361 61 0 10 chr6 28514080 28514376 -153900866 - AluY SINE Alu -18 293 1 588 232 7 53 chr6 28514687 28514838 -153900404 - MER20 DNA MER1_type -52 167 24 698 260 25 20 chr6 28515203 28515407 -153899835 + MER20 DNA MER1_type 8 212 -7 642 167 40 8 chr6 28515597 28515723 -153899519 + L1PA13 LINE L1 6033 6162 -1 26 30 0 0 chr6 28515789 28515822 -153899420 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr6 28516383 28516416 -153898826 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr6 28517095 28517119 -153898123 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 28517180 28517210 -153898032 + AT_rich Low_complexity Low_complexity 1 30 0 3707 44 16 0 chr6 28517690 28518118 -153897124 - L1PA3 LINE L1 0 6155 5721 7165 23 0 0 chr6 28518118 28519277 -153895965 + L1PA3 LINE L1 4563 5721 -434 432 268 0 0 chr6 28519447 28519544 -153895698 + Tigger3(Golem) DNA MER2_type 2 98 -2931 436 238 0 0 chr6 28519557 28519641 -153895601 + Tigger3(Golem) DNA MER2_type 2945 3028 -1 252 216 0 0 chr6 28519987 28520038 -153895204 + L1MC4 LINE L1 6653 6703 -1339 230 191 0 0 chr6 28520041 28520088 -153895154 + LTR66 LTR ERVL 392 438 -172 * 320 270 0 0 chr6 28520046 28520135 -153895107 + L1MC4 LINE L1 6615 6703 -1339 297 240 0 0 chr6 28520089 28520164 -153895078 + (TA)n Simple_repeat Simple_repeat 2 76 0 * 1767 132 59 0 chr6 28520164 28520437 -153894805 - AluSq SINE Alu -22 291 3 28 48 0 0 chr6 28520796 28520838 -153894404 + AT_rich Low_complexity Low_complexity 1 42 0 1321 214 50 10 chr6 28521963 28522262 -153892980 - AluJo SINE Alu -1 311 1 276 149 0 60 chr6 28523572 28523639 -153891603 + MADE1 DNA Mariner 1 63 -17 270 295 169 38 chr6 28523804 28524065 -153891177 - MLT1J LTR MaLR -210 301 7 336 243 0 162 chr6 28526137 28526310 -153888932 - L2 LINE L2 -4 3309 3165 407 78 16 0 chr6 28526822 28526886 -153888356 + (CA)n Simple_repeat Simple_repeat 1 65 0 526 283 53 33 chr6 28527189 28527433 -153887809 - LTR16A LTR ERVL -184 266 18 28 71 0 0 chr6 28528796 28528852 -153886390 + AT_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr6 28529179 28529208 -153886034 + AT_rich Low_complexity Low_complexity 1 29 0 6159 31 0 5 chr6 28529366 28530109 -153885133 - L1PA3 LINE L1 -3 6152 5414 10726 35 0 0 chr6 28530109 28531412 -153883830 + L1PA3 LINE L1 4101 5403 -743 218 331 66 22 chr6 28532033 28532169 -153883073 + L2 LINE L2 2122 2263 -1051 21 0 0 0 chr6 28532245 28532266 -153882976 + AT_rich Low_complexity Low_complexity 1 21 0 1021 144 98 90 chr6 28532950 28533206 -153882036 - Tigger2 DNA MER2_type -10 2708 2451 3797 186 35 0 chr6 28533260 28533992 -153881250 - Tigger2 DNA MER2_type -1959 759 2 1358 276 95 84 chr6 28534090 28535607 -153879635 + MER110-int LTR ERV1 1952 3590 -1057 715 264 98 8 chr6 28535814 28536068 -153879174 + MLT1D LTR MaLR 1 277 -228 381 300 0 0 chr6 28536165 28536275 -153878967 + MLT1A2 LTR MaLR 51 160 -214 918 197 11 26 chr6 28536327 28536538 -153878704 + MLT1A2 LTR MaLR 182 374 0 * 928 283 9 0 chr6 28536538 28536767 -153878475 + MLT1D LTR MaLR 275 505 0 655 216 120 0 chr6 28536919 28537125 -153878117 - MER33 DNA MER1_type -264 60 1 180 0 0 0 chr6 28537164 28537184 -153878058 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 436 325 48 10 chr6 28537335 28537541 -153877701 + MER110 LTR ERV1 242 455 -36 1195 186 154 7 chr6 28538060 28538294 -153876948 + MER47A DNA MER2_type 1 292 -2031 12616 60 6 1 chr6 28538294 28540670 -153874572 - L1PA6 LINE L1 -4 6150 3742 1195 186 154 7 chr6 28540670 28540741 -153874501 + MER47A DNA MER2_type 292 351 -15 483 63 0 0 chr6 28540812 28540875 -153874367 + (CA)n Simple_repeat Simple_repeat 2 64 0 1820 139 158 13 chr6 28541644 28542018 -153873224 + MSTA LTR MaLR 1 428 0 8890 158 8 35 chr6 28542020 28543642 -153871600 + MSTA-int LTR MaLR 3 1580 0 1624 178 131 18 chr6 28543644 28544026 -153871216 + MSTA LTR MaLR 3 427 -1 1583 251 48 15 chr6 28544470 28544925 -153870317 - MLT1D LTR MaLR 0 505 36 315 310 9 17 chr6 28545201 28545317 -153869925 + MIR SINE MIR 124 238 -24 749 269 28 9 chr6 28546511 28546723 -153868519 + MER20 DNA MER1_type 2 217 -2 183 80 0 0 chr6 28546761 28546786 -153868456 + (T)n Simple_repeat Simple_repeat 1 25 0 273 373 88 28 chr6 28547056 28547455 -153867787 - MLT1J1 LTR MaLR -3 443 21 1105 113 6 0 chr6 28547480 28547640 -153867602 + AluSg/x SINE Alu 151 311 -1 2125 109 10 6 chr6 28547788 28548099 -153867143 - AluSq SINE Alu -1 312 1 431 359 67 10 chr6 28548790 28548999 -153866243 + L1PA16 LINE L1 790 1010 -6564 12357 240 27 20 chr6 28549123 28552852 -153862390 + L1PA16 LINE L1 2182 5884 -1720 1050 185 132 57 chr6 28552852 28553117 -153862125 + AluJo SINE Alu 2 286 -16 1111 67 0 12 chr6 28553117 28553281 -153861961 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 12357 240 27 20 chr6 28553281 28554107 -153861135 + L1PA16 LINE L1 5884 6775 -829 1768 78 19 109 chr6 28554107 28554428 -153860814 + L1PA10 LINE L1 5876 6167 -1 12357 240 27 20 chr6 28554428 28555160 -153860082 + L1PA16 LINE L1 6775 7500 -104 2021 186 108 48 chr6 28555560 28556652 -153858590 - pTR5 LTR ERV1 -259 2179 743 397 322 72 15 chr6 28556972 28557236 -153858006 - MER110 LTR ERV1 -26 465 187 266 224 19 112 chr6 28557310 28557417 -153857825 - MER110A LTR ERV1 -298 170 74 326 98 0 16 chr6 28557616 28557677 -153857565 + (TG)n Simple_repeat Simple_repeat 2 61 0 419 141 13 0 chr6 28558628 28558706 -153856536 + (TA)n Simple_repeat Simple_repeat 2 80 0 21 0 0 0 chr6 28559420 28559441 -153855801 + AT_rich Low_complexity Low_complexity 1 21 0 354 308 70 69 chr6 28561146 28561520 -153853722 + L1ME3A LINE L1 4348 4722 -1424 245 270 40 10 chr6 28561763 28561863 -153853379 + L1ME3A LINE L1 5341 5443 -719 543 316 58 69 chr6 28561922 28562361 -153852881 + L1ME3A LINE L1 5479 5941 -223 233 298 112 42 chr6 28562510 28562795 -153852447 + L1MC/D LINE L1 5293 5597 -2211 402 74 0 0 chr6 28563434 28563488 -153851754 + (CA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr6 28563723 28563744 -153851498 + AT_rich Low_complexity Low_complexity 1 21 0 1927 148 7 3 chr6 28563887 28564192 -153851050 + AluSx SINE Alu 1 306 -6 185 0 40 0 chr6 28564615 28564640 -153850602 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr6 28564733 28564756 -153850486 + AT_rich Low_complexity Low_complexity 1 23 0 1316 269 89 44 chr6 28564989 28565619 -153849623 + L1ME2 LINE L1 3855 4556 -1590 2475 141 24 12 chr6 28565619 28566038 -153849204 + MSTA LTR MaLR 5 428 0 1316 269 89 44 chr6 28566038 28566500 -153848742 + L1ME2 LINE L1 4556 4996 -1150 31 96 0 0 chr6 28566647 28566741 -153848501 + AT_rich Low_complexity Low_complexity 1 94 0 809 227 173 27 chr6 28566796 28567171 -153848071 + L1ME2 LINE L1 5329 5758 -406 606 210 167 21 chr6 28567176 28567362 -153847880 - MER20 DNA MER1_type -6 213 1 528 241 49 15 chr6 28567375 28567578 -153847664 + L1ME2 LINE L1 5768 5977 -187 286 292 26 0 chr6 28567625 28567738 -153847504 + L1MA10 LINE L1 6215 6330 -4 586 237 97 22 chr6 28567742 28567886 -153847356 + LTR37B LTR ERV1 221 390 -78 1252 234 37 68 chr6 28567886 28568368 -153846874 - MLT1C LTR MaLR 0 467 1 586 237 97 22 chr6 28568368 28568451 -153846791 + LTR37B LTR ERV1 390 465 -3 438 210 68 31 chr6 28568685 28568847 -153846395 - L1M4 LINE L1 -2163 3983 3816 29 78 0 0 chr6 28569647 28569711 -153845531 + AT_rich Low_complexity Low_complexity 1 64 0 38 39 0 0 chr6 28569815 28569867 -153845375 + AT_rich Low_complexity Low_complexity 1 52 0 206 300 0 0 chr6 28570845 28570895 -153844347 - MER5A DNA MER1_type -87 102 53 225 233 151 68 chr6 28571705 28571778 -153843464 - MER2 DNA MER2_type 0 345 267 929 153 8 115 chr6 28571825 28572060 -153843182 - MER2 DNA MER2_type -135 210 1 201 74 0 0 chr6 28572392 28572419 -153842823 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 232 246 132 53 chr6 28572728 28572842 -153842400 + L2 LINE L2 3158 3280 -33 25 0 0 0 chr6 28573376 28573401 -153841841 + AT_rich Low_complexity Low_complexity 1 25 0 353 335 26 26 chr6 28573988 28574143 -153841099 - L1MEc LINE L1 -4723 1673 1519 34 24 0 0 chr6 28575966 28576007 -153839235 + AT_rich Low_complexity Low_complexity 1 41 0 275 274 0 20 chr6 28576031 28576133 -153839109 + T-rich Low_complexity Low_complexity 1 100 0 230 359 32 19 chr6 28576360 28576516 -153838726 + L2 LINE L2 2431 2588 -726 201 323 71 40 chr6 28576528 28576627 -153838615 - L2 LINE L2 -852 2462 2361 * 390 338 98 26 chr6 28576625 28576930 -153838312 + L2 LINE L2 2622 2948 -366 282 346 117 0 chr6 28577068 28577247 -153837995 + L2 LINE L2 3114 3313 0 248 372 0 0 chr6 28578071 28578157 -153837085 + L2 LINE L2 2992 3077 -195 726 133 7 14 chr6 28578794 28578937 -153836305 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 255 229 64 0 chr6 28578985 28579094 -153836148 + (TA)n Simple_repeat Simple_repeat 1 116 0 608 22 44 0 chr6 28579789 28579879 -153835363 + (CA)n Simple_repeat Simple_repeat 2 95 0 325 272 112 56 chr6 28580067 28580444 -153834798 - L1MC4 LINE L1 -252 7790 7290 22 0 0 0 chr6 28581898 28581920 -153833322 + AT_rich Low_complexity Low_complexity 1 22 0 5798 94 23 19 chr6 28582062 28583601 -153831641 + L1PA8A LINE L1 4592 6131 0 2877 261 48 53 chr6 28583988 28585656 -153829586 - MER31-int LTR ERV1 0 4871 3355 2035 191 47 29 chr6 28585638 28586187 -153829055 - MER31-int LTR ERV1 -1112 3824 3266 * 3597 91 5 62 chr6 28586702 28586885 -153828357 + L1PB1 LINE L1 5600 5792 -359 267 31 0 0 chr6 28586885 28586917 -153828325 + (TG)n Simple_repeat Simple_repeat 1 32 0 3597 91 5 62 chr6 28586917 28587317 -153827925 + L1PB1 LINE L1 5792 6150 -1 1323 161 109 123 chr6 28589843 28590402 -153824840 - MER31-int LTR ERV1 -1755 4576 4026 5493 120 31 10 chr6 28590463 28591336 -153823906 - L1PA15 LINE L1 0 6165 5275 1869 278 45 53 chr6 28591338 28592090 -153823152 - L1PA12 LINE L1 -6834 747 2 397 227 18 9 chr6 28592097 28592207 -153823035 - MER31-int LTR ERV1 -2345 2591 2481 * 783 240 88 99 chr6 28592205 28593633 -153821609 - MER31-int LTR ERV1 -2550 2573 1161 284 196 196 9 chr6 28593685 28593797 -153821445 - MER34C LTR ERV1 -293 292 160 466 220 0 0 chr6 28593799 28593899 -153821343 - MER31-int LTR ERV1 -4133 990 891 701 278 108 43 chr6 28594166 28594291 -153820951 - MER65A LTR ERV1 0 445 330 2063 131 150 5 chr6 28594291 28594665 -153820577 - MSTA LTR MaLR 0 428 1 701 278 108 43 chr6 28594665 28594957 -153820285 - MER65A LTR ERV1 -115 330 1 2248 112 3 0 chr6 28595017 28595329 -153819913 + AluSp SINE Alu 1 313 0 570 247 89 35 chr6 28596041 28596300 -153818942 + MER20B DNA MER1_type 234 506 -277 252 86 0 0 chr6 28596494 28596503 -153818739 + (TG)n Simple_repeat Simple_repeat 1 44 0 252 86 0 0 chr6 28596503 28596538 -153818704 + (TG)n Simple_repeat Simple_repeat 2 36 0 1973 148 29 37 chr6 28596643 28597021 -153818221 - THE1C LTR MaLR 0 375 1 1873 179 102 8 chr6 28597053 28597444 -153817798 + MSTA LTR MaLR 1 428 0 708 182 202 83 chr6 28597514 28597906 -153817336 + MER31B LTR ERV1 1 514 0 180 289 99 67 chr6 28598298 28598641 -153816601 - L2 LINE L2 -1651 1663 1310 267 31 0 0 chr6 28598828 28598860 -153816382 + (GA)n Simple_repeat Simple_repeat 1 32 0 788 245 55 10 chr6 28598898 28599098 -153816144 - MER58A DNA MER1_type -12 212 4 340 279 152 44 chr6 28599156 28599314 -153815928 - MER5B DNA MER1_type -3 175 1 221 318 73 9 chr6 28599367 28599477 -153815765 - L2 LINE L2 -2344 970 854 950 254 118 76 chr6 28599530 28600046 -153815196 + MLT1F LTR MaLR 3 540 -2 32 91 0 0 chr6 28601445 28601533 -153813709 + AT_rich Low_complexity Low_complexity 1 88 0 2042 139 7 0 chr6 28601613 28601916 -153813326 + AluSx SINE Alu 1 305 -7 212 364 0 0 chr6 28602376 28602442 -153812800 - MIR SINE MIR -38 224 159 1644 126 4 4 chr6 28603173 28603412 -153811830 + AluSx SINE Alu 1 239 -73 24 0 0 0 chr6 28603442 28603466 -153811776 + AT_rich Low_complexity Low_complexity 1 24 0 5471 214 52 41 chr6 28603488 28605207 -153810035 - L1MCa LINE L1 -2216 4210 2473 774 115 66 93 chr6 28605208 28605391 -153809851 - AluJb SINE Alu -13 299 122 1155 154 75 19 chr6 28605391 28605657 -153809585 - L1MCa LINE L1 -3971 2455 2175 2154 91 16 53 chr6 28605657 28605976 -153809266 - AluSx SINE Alu -5 307 1 3559 260 110 40 chr6 28606048 28607083 -153808159 + L1M3d LINE L1 572 1488 -5165 1885 113 4 18 chr6 28607083 28607358 -153807884 + AluSx SINE Alu 39 309 -3 3559 260 110 40 chr6 28607358 28607613 -153807629 + L1M3d LINE L1 1488 1724 -4929 1912 120 72 10 chr6 28607613 28607905 -153807337 + AluSx SINE Alu 1 310 -2 24353 80 7 16 chr6 28607912 28611283 -153803959 + L1P LINE L1 11 3349 -2797 438 211 73 16 chr6 28661287 28661410 -153753832 + MER1B DNA MER1_type 210 339 0 692 218 18 12 chr6 28662398 28662563 -153752679 - MLT1A1 LTR MaLR -2 363 198 2409 62 16 10 chr6 28662766 28663075 -153752167 - AluY SINE Alu 0 311 1 255 133 0 0 chr6 28663348 28663393 -153751849 + (TCCCC)n Simple_repeat Simple_repeat 2 46 0 1564 190 11 4 chr6 28663393 28663672 -153751570 - AluJb SINE Alu -18 294 14 295 104 15 15 chr6 28663809 28663876 -153751366 + (TA)n Simple_repeat Simple_repeat 1 67 0 740 137 23 30 chr6 28665416 28665547 -153749695 - AluJo SINE Alu -66 246 117 2202 119 0 0 chr6 28667587 28667880 -153747362 - AluSx SINE Alu -17 295 3 1196 111 0 0 chr6 28667881 28668034 -153747208 - AluSg/x SINE Alu -18 294 142 391 336 53 45 chr6 28668274 28668649 -153746593 - L1ME LINE L1 -5145 925 548 207 0 0 0 chr6 28669102 28669125 -153746117 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 946 237 73 15 chr6 28670510 28670839 -153744403 - L1ME3A LINE L1 -51 6119 5772 397 196 58 116 chr6 28670861 28670999 -153744243 + L2 LINE L2 3176 3305 -8 428 318 121 12 chr6 28672188 28672361 -153742881 - MIR SINE MIR -19 243 52 184 222 74 19 chr6 28672654 28672708 -153742534 + L2 LINE L2 3256 3312 -1 181 341 106 0 chr6 28672928 28673013 -153742229 + MIR SINE MIR 37 130 -78 1065 244 15 7 chr6 28673581 28673851 -153741391 - MLT1C LTR MaLR 0 467 196 750 168 0 0 chr6 28673857 28673994 -153741248 + CT-rich Low_complexity Low_complexity 4 140 0 465 250 0 0 chr6 28674008 28674132 -153741110 + T-rich Low_complexity Low_complexity 1 124 0 * 935 160 0 6 chr6 28674118 28674299 -153740943 + CT-rich Low_complexity Low_complexity 1 180 0 753 181 7 0 chr6 28674306 28674444 -153740798 - FRAM SINE Alu -17 159 21 560 228 25 13 chr6 28674455 28674613 -153740629 - MLT1C LTR MaLR -307 160 1 1614 154 10 16 chr6 28675873 28676178 -153739064 - L1MC2 LINE L1 -285 6059 5757 2270 112 3 0 chr6 28676269 28676573 -153738669 + AluSp SINE Alu 1 305 -8 21 0 0 0 chr6 28676718 28676739 -153738503 + AT_rich Low_complexity Low_complexity 1 21 0 2991 252 54 4 chr6 28676859 28677808 -153737434 - L1MC4 LINE L1 -188 7854 6859 1335 170 94 11 chr6 28677935 28678243 -153736999 + MER61B LTR ERV1 1 425 0 650 253 26 13 chr6 28678439 28678593 -153736649 + MIR SINE MIR 21 176 -86 180 320 77 0 chr6 28680307 28680385 -153734857 - MIR SINE MIR -63 145 62 195 355 0 0 chr6 28680857 28680933 -153734309 - MIR SINE MIR -108 154 79 237 266 142 0 chr6 28681248 28681361 -153733881 + LTR65 LTR ERV1 35 163 -506 191 384 95 26 chr6 28681712 28682282 -153732960 - L2 LINE L2 -534 2780 2172 376 267 0 0 chr6 28683668 28683758 -153731484 + L1MC/D LINE L1 5574 5663 -2145 22 0 0 0 chr6 28684009 28684031 -153731211 + AT_rich Low_complexity Low_complexity 1 22 0 201 162 0 0 chr6 28684705 28684742 -153730500 + GA-rich Low_complexity Low_complexity 4 40 0 2368 97 3 0 chr6 28685293 28685601 -153729641 + AluSg SINE Alu 1 309 -1 260 291 89 63 chr6 28686606 28686764 -153728478 + MIR SINE MIR 78 239 -23 2344 79 0 10 chr6 28686905 28687210 -153728032 + AluSq SINE Alu 1 302 -11 310 176 24 0 chr6 28687432 28687517 -153727725 + (CAT)n Simple_repeat Simple_repeat 3 89 0 1705 214 36 44 chr6 28687942 28688446 -153726796 - L1MA9 LINE L1 -38 6274 5775 267 31 0 0 chr6 28688456 28688473 -153726769 + (CA)n Simple_repeat Simple_repeat 1 49 0 267 31 0 0 chr6 28688473 28688505 -153726737 + (CA)n Simple_repeat Simple_repeat 2 33 0 2140 119 0 39 chr6 28688522 28688833 -153726409 - AluSx SINE Alu -11 301 3 426 225 0 0 chr6 28688937 28689026 -153726216 - L1MA9 LINE L1 -612 5700 5612 207 218 0 0 chr6 28689026 28689081 -153726161 + (TATG)n Simple_repeat Simple_repeat 2 56 0 626 14 0 0 chr6 28690918 28690990 -153724252 + tRNA-Pro-CCG tRNA tRNA 1 72 -3 35 78 0 0 chr6 28692165 28692242 -153723000 + AT_rich Low_complexity Low_complexity 1 77 0 353 353 31 24 chr6 28692314 28692569 -153722673 + HAL1 LINE L1 604 860 -1647 463 261 48 96 chr6 28692638 28692783 -153722459 + HAL1 LINE L1 1017 1145 -1362 3313 150 30 45 chr6 28692783 28693516 -153721726 + L1MC2 LINE L1 5622 6343 -1 463 261 48 96 chr6 28693516 28693642 -153721600 + HAL1 LINE L1 1145 1275 -1232 219 204 0 0 chr6 28693657 28693706 -153721536 + A-rich Low_complexity Low_complexity 3 51 0 1330 116 0 0 chr6 28693706 28693887 -153721355 + AluSg/x SINE Alu 128 308 -1 729 293 84 21 chr6 28693975 28694263 -153720979 + HAL1 LINE L1 1350 1683 -824 1738 33 0 19 chr6 28694263 28694475 -153720767 + AluY SINE Alu 96 303 -8 729 293 84 21 chr6 28694475 28694671 -153720571 + HAL1 LINE L1 1683 1865 -642 310 284 41 15 chr6 28694754 28694951 -153720291 + HAL1 LINE L1 2115 2316 -191 384 312 144 23 chr6 28694978 28695407 -153719835 - MLT1J LTR MaLR -30 481 1 305 242 118 33 chr6 28695415 28695568 -153719674 + HAL1 LINE L1 2338 2503 -4 723 12 0 0 chr6 28696482 28696564 -153718678 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 198 0 0 0 chr6 28697132 28697154 -153718088 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2018 88 17 7 chr6 28697179 28697473 -153717769 + AluSx SINE Alu 1 297 -15 4003 104 13 17 chr6 28697750 28698324 -153716918 + LTR43 LTR ERV1 1 574 -28 2050 130 7 0 chr6 28698324 28698623 -153716619 + AluSx SINE Alu 2 302 -10 4003 104 13 17 chr6 28698623 28698652 -153716590 + LTR43 LTR ERV1 574 602 0 1979 106 3 11 chr6 28698672 28698981 -153716261 - AluSg SINE Alu 0 307 1 22 88 0 0 chr6 28698984 28699041 -153716201 + AT_rich Low_complexity Low_complexity 1 57 0 671 92 43 51 chr6 28699549 28699950 -153715292 + (TTATA)n Simple_repeat Simple_repeat 1 398 0 466 52 46 76 chr6 28699954 28700387 -153714855 + (TA)n Simple_repeat Simple_repeat 1 419 0 441 297 80 6 chr6 28700436 28700637 -153714605 - L1ME3A LINE L1 -224 5946 5762 1458 248 90 53 chr6 28700644 28700703 -153714539 - MLT1E LTR MaLR -8 585 530 2388 100 0 0 chr6 28700703 28701012 -153714230 + AluSc SINE Alu 1 309 0 1458 248 90 53 chr6 28701012 28701516 -153713726 - MLT1E LTR MaLR -63 530 1 640 281 101 40 chr6 28701604 28702520 -153712722 - L1ME3A LINE L1 -253 5917 4965 189 180 0 0 chr6 28702535 28702585 -153712657 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2140 123 0 7 chr6 28702632 28702933 -153712309 + AluSx SINE Alu 5 303 -9 495 238 85 56 chr6 28702940 28703281 -153711961 - L1ME3A LINE L1 -1230 4916 4566 2082 139 0 0 chr6 28703314 28703601 -153711641 + AluSx SINE Alu 1 287 -25 31 0 0 0 chr6 28703781 28703812 -153711430 + AT_rich Low_complexity Low_complexity 1 31 0 1292 161 14 5 chr6 28704059 28704276 -153710966 + MER20 DNA MER1_type 1 219 0 1664 199 28 14 chr6 28704858 28705215 -153710027 + MLT1A1 LTR MaLR 4 365 0 1814 112 0 24 chr6 28705238 28705489 -153709753 + AluSq SINE Alu 1 245 -68 403 320 104 14 chr6 28705751 28705973 -153709269 - MIR SINE MIR -20 242 1 639 182 123 12 chr6 28706185 28706355 -153708887 + MER53 DNA DNA 1 189 0 2303 85 3 38 chr6 28706422 28706739 -153708503 - AluSg SINE Alu -4 306 1 196 345 69 11 chr6 28707712 28707799 -153707443 - L2 LINE L2 -188 3084 2993 1155 150 5 5 chr6 28708970 28709157 -153706085 - U2 snRNA snRNA -1 187 1 1535 206 32 9 chr6 28709194 28709533 -153705709 - MER65C LTR ERV1 0 461 115 833 206 39 0 chr6 28709587 28709767 -153705475 - MER66B-int LTR ERV1 -1690 4986 4800 441 191 53 15 chr6 28710070 28710201 -153705041 - MER66B-int LTR ERV1 -2577 4021 3886 2485 81 0 0 chr6 28710210 28710517 -153704725 + AluY SINE Alu 1 307 -4 1199 172 24 97 chr6 28710517 28710672 -153704570 - MER66B-int LTR ERV1 -2512 4164 3999 2262 105 0 13 chr6 28710672 28710985 -153704257 - AluSg SINE Alu -1 309 1 1199 172 24 97 chr6 28710985 28711235 -153704007 - MER66B-int LTR ERV1 -2677 3999 2088 765 132 126 0 chr6 28711312 28711502 -153703740 - MER66B-int LTR ERV1 -6187 1933 1720 4385 217 77 20 chr6 28711507 28712910 -153702332 - MER66B-int LTR ERV1 -3839 2837 1305 274 200 62 0 chr6 28713553 28713618 -153701624 - MER66B-int LTR ERV1 -6410 266 198 291 184 0 0 chr6 28713713 28713762 -153701480 - MER66B LTR ERV1 -9 477 429 619 150 164 116 chr6 28714315 28714561 -153700681 - MER41B LTR ERV1 -182 443 210 2126 117 0 0 chr6 28714561 28714863 -153700379 - AluSx SINE Alu 0 302 1 1630 178 3 24 chr6 28714867 28715159 -153700083 - AluJb SINE Alu -18 294 9 619 150 164 116 chr6 28715159 28715268 -153699974 - MER41B LTR ERV1 -417 208 100 22 70 0 0 chr6 28715646 28715689 -153699553 + AT_rich Low_complexity Low_complexity 1 43 0 509 239 57 88 chr6 28715716 28715821 -153699421 - L1ME2 LINE L1 -11 6153 6046 2328 104 0 0 chr6 28715821 28716120 -153699122 + AluSx SINE Alu 2 300 -12 509 239 57 88 chr6 28716120 28716311 -153698931 - L1ME2 LINE L1 -118 6046 5866 1382 241 13 6 chr6 28716410 28716725 -153698517 + MLT1E LTR MaLR 277 593 0 1708 152 9 81 chr6 28716730 28717053 -153698189 + AluJo SINE Alu 1 300 -12 4826 218 60 35 chr6 28717066 28717927 -153697315 - L1ME2 LINE L1 -332 5834 4997 205 29 59 0 chr6 28717927 28717961 -153697281 + (TA)n Simple_repeat Simple_repeat 2 37 0 4826 218 60 35 chr6 28717961 28718975 -153696267 - L1ME2 LINE L1 -1169 4997 3888 2551 111 57 0 chr6 28718975 28719364 -153695878 + LTR57 LTR ERVL 1 411 0 4826 218 60 35 chr6 28719364 28719635 -153695607 - L1ME2 LINE L1 -2278 3888 3625 1022 220 5 0 chr6 28719648 28719848 -153695394 - MER58A DNA MER1_type -23 201 1 894 250 53 35 chr6 28720123 28720486 -153694756 + L1ME LINE L1 5283 5656 -506 2143 113 0 7 chr6 28720486 28720778 -153694464 + AluSc SINE Alu 1 290 -19 894 250 53 35 chr6 28720778 28720873 -153694369 + L1ME LINE L1 5656 5748 -414 21 36 0 0 chr6 28721105 28721133 -153694109 + AT_rich Low_complexity Low_complexity 1 28 0 1346 175 70 49 chr6 28721141 28721427 -153693815 + AluSp SINE Alu 2 293 -20 36 70 0 0 chr6 28721456 28721527 -153693715 + AT_rich Low_complexity Low_complexity 1 71 0 1519 182 24 0 chr6 28721977 28722230 -153693012 + AluJo SINE Alu 24 282 -30 1973 129 44 3 chr6 28722371 28722666 -153692576 + AluSx SINE Alu 1 307 -5 2285 89 3 0 chr6 28723026 28723318 -153691924 - AluSg SINE Alu -17 293 1 392 276 79 16 chr6 28723816 28723943 -153691299 + MIR SINE MIR 20 154 -108 2322 89 0 0 chr6 28723997 28724290 -153690952 - AluY SINE Alu -18 293 1 282 250 58 112 chr6 28725115 28725375 -153689867 - L2 LINE L2 -40 3273 3028 384 242 33 0 chr6 28725825 28725916 -153689326 - MER67B LTR ERV1 0 661 568 * 1376 169 108 18 chr6 28725901 28726179 -153689063 - MER67A LTR ERV1 -240 303 1 323 275 83 63 chr6 28726683 28727080 -153688162 - L1MC5 LINE L1 -62 7899 7495 304 267 95 8 chr6 28727071 28727213 -153688029 - L1MC5 LINE L1 -1046 6765 6611 * 2215 135 0 0 chr6 28727218 28727530 -153687712 - AluSx SINE Alu 0 312 1 615 294 114 55 chr6 28727810 28728354 -153686888 - ERVL LTR ERVL -829 4935 4360 859 310 52 34 chr6 28728382 28728879 -153686363 - ERVL LTR ERVL -1496 4268 3763 286 208 0 0 chr6 28728927 28728980 -153686262 - MIR SINE MIR 0 262 210 2035 121 3 19 chr6 28729117 28729432 -153685810 - AluSx SINE Alu -2 310 1 2131 103 17 0 chr6 28730653 28730943 -153684299 + AluSx SINE Alu 1 295 -17 2493 54 0 0 chr6 28733792 28734089 -153681153 - AluY SINE Alu -14 297 1 583 217 188 52 chr6 28734122 28734527 -153680715 - Charlie4a DNA MER1_type -12 496 37 27 0 0 0 chr6 28734939 28734966 -153680276 + AT_rich Low_complexity Low_complexity 1 27 0 229 324 93 0 chr6 28734981 28735017 -153680225 - L2 LINE L2 -760 2554 2523 3867 141 67 2 chr6 28735017 28735613 -153679629 - MER41B LTR ERV1 0 635 1 229 324 93 0 chr6 28735613 28735684 -153679558 - L2 LINE L2 -791 2523 2437 1274 197 54 26 chr6 28735834 28736319 -153678923 - MER34 LTR ERV1 0 542 11 566 171 197 7 chr6 28736443 28736595 -153678647 - MER67C LTR ERV1 0 710 530 * 1043 187 142 24 chr6 28736565 28736896 -153678346 - MER67C LTR ERV1 -338 372 3 1246 231 102 21 chr6 28737400 28737992 -153677250 - LTR48B LTR ERV1 0 644 3 269 231 90 75 chr6 28739751 28739885 -153675357 - L1ME LINE L1 -481 5640 5505 405 234 159 59 chr6 28739906 28740145 -153675097 - L1ME LINE L1 -757 5389 5127 217 227 186 0 chr6 28740485 28740582 -153674660 - MIR SINE MIR -49 213 99 293 79 0 0 chr6 28740640 28740678 -153674564 - LTR56 LTR ERV1 -58 387 350 350 214 78 10 chr6 28741077 28741180 -153674062 + Charlie5 DNA MER1_type 14 123 -2489 905 234 135 6 chr6 28741182 28741447 -153673795 + Charlie5 DNA MER1_type 2234 2552 -72 2034 89 38 21 chr6 28741447 28741738 -153673504 - AluSx SINE Alu -14 298 3 905 234 135 6 chr6 28741738 28741805 -153673437 + Charlie5 DNA MER1_type 2552 2609 -15 2170 117 7 0 chr6 28741813 28742111 -153673131 - AluSg SINE Alu -10 300 1 1947 133 7 13 chr6 28742242 28742542 -153672700 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr6 28743023 28743046 -153672196 + (A)n Simple_repeat Simple_repeat 1 23 0 2078 125 0 0 chr6 28743356 28743637 -153671605 + AluSx SINE Alu 1 281 -31 1489 142 12 20 chr6 28743971 28744224 -153671018 - AluSx SINE Alu -12 300 50 387 0 0 0 chr6 28744472 28744515 -153670727 + (CA)n Simple_repeat Simple_repeat 2 44 0 2342 49 33 29 chr6 28746994 28747300 -153667942 - AluSx SINE Alu -5 307 1 375 332 83 28 chr6 28747719 28748004 -153667238 + L2 LINE L2 2794 3098 -215 1211 279 67 17 chr6 28748255 28748674 -153666568 - LTR16A LTR ERVL -10 440 1 2224 104 3 0 chr6 28748778 28749075 -153666167 - AluSq SINE Alu -2 311 14 585 122 0 0 chr6 28749419 28749493 -153665749 + tRNA-Val-GTG tRNA tRNA 1 74 -2 1391 102 0 0 chr6 28749531 28749717 -153665525 + AluY SINE Alu 122 307 -4 29 28 0 0 chr6 28750157 28750193 -153665049 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr6 28750655 28750680 -153664562 + (A)n Simple_repeat Simple_repeat 1 25 0 299 370 48 0 chr6 28750900 28751065 -153664177 + L2 LINE L2 2925 3097 -175 2017 123 0 7 chr6 28751068 28751368 -153663874 - AluSg SINE Alu -12 298 1 266 88 0 0 chr6 28751397 28751431 -153663811 + U2 snRNA snRNA 1 34 -154 234 95 214 0 chr6 28751431 28751473 -153663769 + U2 snRNA snRNA 7 57 -131 2168 97 17 7 chr6 28751624 28751939 -153663303 + AluSx SINE Alu 1 318 0 296 319 28 14 chr6 28751956 28752097 -153663145 - LTR33 LTR ERVL -77 444 302 * 400 241 106 71 chr6 28752095 28752221 -153663021 - LTR33 LTR ERVL -345 176 41 2437 91 0 0 chr6 28752221 28752528 -153662714 + AluSg SINE Alu 1 307 -3 400 241 106 71 chr6 28752528 28752571 -153662671 - LTR33 LTR ERVL -480 41 1 1715 180 0 40 chr6 28752863 28753186 -153662056 + AluJb SINE Alu 1 310 -2 212 0 36 0 chr6 28753371 28753399 -153661843 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 825 337 22 16 chr6 28753399 28753770 -153661472 - ERVL LTR ERVL -663 5101 4729 365 164 68 0 chr6 28753772 28753845 -153661397 - MLT1A1 LTR MaLR -287 78 1 692 293 102 25 chr6 28753845 28754245 -153660997 - L2 LINE L2 -1312 2002 1572 2120 109 0 0 chr6 28754741 28755086 -153660156 + AluY SINE Alu 1 345 0 22 0 0 0 chr6 28755260 28755282 -153659960 + AT_rich Low_complexity Low_complexity 1 22 0 1428 191 0 12 chr6 28755282 28755534 -153659708 - AluJo SINE Alu -25 287 39 2235 114 13 0 chr6 28755865 28756325 -153658917 + AluSx SINE Alu 1 464 0 620 126 0 0 chr6 28756443 28756530 -153658712 + AluS SINE Alu 2 88 -224 695 0 0 0 chr6 28757303 28757375 -153657867 + tRNA-His-CAC tRNA tRNA 1 72 -3 2131 131 0 0 chr6 28758201 28758492 -153656750 + AluSx SINE Alu 4 294 -18 180 250 0 79 chr6 28758541 28758617 -153656625 - L3 LINE CR1 -351 1226 1157 194 327 10 30 chr6 28759367 28759468 -153655774 + MIR SINE MIR 104 202 -60 378 308 34 14 chr6 28761016 28761162 -153654080 + L2 LINE L2 3165 3313 0 656 40 0 0 chr6 28761447 28761521 -153653721 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 2492 87 0 0 chr6 28762775 28763085 -153652157 + AluSg SINE Alu 1 310 0 212 193 18 35 chr6 28763361 28763418 -153651824 + A-rich Low_complexity Low_complexity 4 59 0 2129 103 32 0 chr6 28763428 28763710 -153651532 + AluSx SINE Alu 2 292 -20 231 36 0 0 chr6 28763716 28763744 -153651498 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 23 68 0 0 chr6 28764111 28764155 -153651087 + AT_rich Low_complexity Low_complexity 1 44 0 1077 179 0 0 chr6 28764369 28764531 -153650711 - FRAM SINE Alu 0 166 5 2318 105 0 0 chr6 28764825 28765121 -153650121 - AluSx SINE Alu -16 296 1 603 207 13 45 chr6 28765155 28765336 -153649906 + MER31-int LTR ERV1 3171 3288 -1648 1712 170 0 38 chr6 28765784 28766101 -153649141 - AluJo SINE Alu -7 305 1 2468 222 53 82 chr6 28766238 28766377 -153648865 + MER31-int LTR ERV1 3401 3543 -1393 1758 151 37 3 chr6 28766377 28766516 -153648726 - AluSx SINE Alu -3 309 176 1894 83 4 8 chr6 28766516 28766770 -153648472 - AluSc SINE Alu -56 253 1 1758 151 37 3 chr6 28766770 28766929 -153648313 - AluSx SINE Alu -136 176 1 2468 222 53 82 chr6 28766929 28767613 -153647629 + MER31-int LTR ERV1 3543 4200 -736 1020 205 144 26 chr6 28767687 28767857 -153647385 + LTR37A LTR ERV1 1 150 -276 2364 152 25 57 chr6 28767857 28768297 -153646945 + MSTB LTR MaLR 1 426 0 1020 205 144 26 chr6 28768297 28768473 -153646769 + LTR37A LTR ERV1 150 388 -38 4972 186 41 14 chr6 28768473 28769385 -153645857 - L1MB5 LINE L1 -15 6159 5273 1689 127 162 4 chr6 28769385 28769644 -153645598 - AluSg SINE Alu 0 300 1 4972 186 41 14 chr6 28769644 28770152 -153645090 - L1MB5 LINE L1 -901 5273 4780 2312 131 0 0 chr6 28770152 28770464 -153644778 - AluSx SINE Alu 0 312 1 4972 186 41 14 chr6 28770464 28770637 -153644605 - L1MB5 LINE L1 -1394 4780 4613 2093 203 27 24 chr6 28770637 28770935 -153644307 + MLT2D LTR ERVL 1 297 -117 2557 46 13 0 chr6 28770935 28771117 -153644125 - AluY SINE Alu 0 311 122 231 36 0 0 chr6 28771117 28771145 -153644097 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2557 46 13 0 chr6 28771145 28771269 -153643973 - AluY SINE Alu -189 122 1 2093 203 27 24 chr6 28771269 28771341 -153643901 + MLT2D LTR ERVL 297 375 -39 330 26 0 0 chr6 28771341 28771380 -153643862 + (CA)n Simple_repeat Simple_repeat 2 40 0 2093 203 27 24 chr6 28771380 28771421 -153643821 + MLT2D LTR ERVL 375 414 0 4972 186 41 14 chr6 28771421 28771459 -153643783 - L1MB5 LINE L1 -1561 4613 4478 23 33 0 0 chr6 28771642 28771672 -153643570 + AT_rich Low_complexity Low_complexity 1 30 0 2370 74 3 3 chr6 28771773 28772071 -153643171 + AluSx SINE Alu 1 298 -14 231 36 0 0 chr6 28772084 28772112 -153643130 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1716 143 0 83 chr6 28772427 28772763 -153642479 - AluSx SINE Alu -2 310 3 474 167 0 0 chr6 28772959 28773055 -153642187 - L1MB5 LINE L1 -1656 4490 4395 289 158 0 18 chr6 28773066 28773123 -153642119 + LTR37A LTR ERV1 371 426 0 2245 89 0 20 chr6 28773319 28773622 -153641620 + AluSq SINE Alu 1 297 -16 432 263 41 26 chr6 28773684 28773878 -153641364 + L1MC4a LINE L1 5853 6049 -1759 1285 254 125 14 chr6 28774142 28774493 -153640749 - MLT1E2 LTR MaLR -2 624 235 257 318 0 28 chr6 28774539 28774646 -153640596 - L2 LINE L2 0 3313 3210 2877 16 0 0 chr6 28774866 28775177 -153640065 + AluYa5 SINE Alu 1 311 0 2403 103 0 0 chr6 28775746 28776058 -153639184 + AluSx SINE Alu 1 312 0 207 100 0 0 chr6 28776215 28776245 -153638997 + (A)n Simple_repeat Simple_repeat 1 30 0 189 154 0 0 chr6 28776342 28776381 -153638861 + A-rich Low_complexity Low_complexity 1 39 0 677 0 0 0 chr6 28776390 28776465 -153638777 - tRNA-Ile-ATT tRNA tRNA -2 75 1 29 0 0 0 chr6 28776562 28776591 -153638651 + AT_rich Low_complexity Low_complexity 1 29 0 1262 191 42 4 chr6 28777402 28777638 -153637604 + LTR10B LTR ERV1 300 544 -3 11664 274 54 49 chr6 28777640 28777827 -153637415 + LTR10B-int LTR ERV1 3 188 -7597 1769 99 0 0 chr6 28777827 28778049 -153637193 + AluSg/x SINE Alu 81 302 -10 11664 274 54 49 chr6 28778049 28783159 -153632083 + LTR10B-int LTR ERV1 188 5390 -2395 6596 270 52 32 chr6 28783165 28785334 -153629908 + BaEV-int LTR ERV1 4437 6649 0 1171 228 30 23 chr6 28785413 28785715 -153629527 + LTR10B LTR ERV1 217 546 -1 2099 108 7 7 chr6 28786108 28786403 -153628839 + AluY SINE Alu 6 300 -11 3830 104 13 20 chr6 28786697 28787247 -153627995 + LTR14 LTR ERVK 3 548 0 34296 98 11 33 chr6 28787247 28789993 -153625249 + HERVKC4 LTR ERVK 1 2805 -2457 2394 46 39 23 chr6 28789993 28790299 -153624943 + AluY SINE Alu 1 311 0 2335 87 0 3 chr6 28790301 28790600 -153624642 + AluY SINE Alu 1 298 -13 34296 98 11 33 chr6 28790600 28790753 -153624489 + HERVKC4 LTR ERVK 2806 2961 -2301 2465 61 0 13 chr6 28790753 28791065 -153624177 + AluY SINE Alu 1 308 -3 34296 98 11 33 chr6 28791065 28791220 -153624022 + HERVKC4 LTR ERVK 2961 3118 -2144 1473 46 6 11 chr6 28791220 28791395 -153623847 - AluY SINE Alu -137 174 1 34296 98 11 33 chr6 28791395 28793416 -153621826 + HERVKC4 LTR ERVK 3118 4971 -291 945 145 6 13 chr6 28793416 28793575 -153621667 - LTR13 LTR ERVK 0 1007 850 5305 156 43 37 chr6 28793609 28794610 -153620632 - LTR13 LTR ERVK 0 1007 1 1865 129 7 11 chr6 28794610 28794890 -153620352 + HERVKC4 LTR ERVK 4966 5244 -18 3865 108 4 21 chr6 28794898 28795456 -153619786 + LTR14 LTR ERVK 1 548 0 302 322 70 0 chr6 28795887 28796030 -153619212 - L1MCc LINE L1 -6254 169 17 2043 128 3 3 chr6 28796507 28796805 -153618437 - AluSx SINE Alu -14 298 1 1996 129 10 16 chr6 28796982 28797292 -153617950 + AluSx SINE Alu 1 308 -4 2122 147 0 0 chr6 28797294 28797600 -153617642 + AluSg SINE Alu 4 309 -1 2268 105 30 0 chr6 28797610 28797914 -153617328 + AluSq SINE Alu 1 313 0 1038 230 8 70 chr6 28797922 28798322 -153616920 - L1M4 LINE L1 -797 5349 4975 2245 95 0 3 chr6 28798338 28798670 -153616572 - AluSp SINE Alu 0 332 2 1901 113 158 78 chr6 28798726 28798994 -153616248 - MER4A LTR ERV1 -1 663 355 2656 61 3 0 chr6 28798994 28799306 -153615936 + AluSp SINE Alu 1 313 0 1901 113 158 78 chr6 28799306 28799410 -153615832 - MER4A LTR ERV1 -309 355 261 535 133 89 0 chr6 28799410 28799500 -153615742 - MER4A LTR ERV1 -566 98 1 803 222 57 84 chr6 28799500 28799708 -153615534 - L1M4 LINE L1 -2118 4028 3816 1869 144 0 35 chr6 28799708 28800021 -153615221 - AluSx SINE Alu -10 302 1 803 222 57 84 chr6 28800021 28800055 -153615187 - L1M4 LINE L1 -2330 3816 3783 1872 167 44 37 chr6 28800055 28800260 -153614982 - MLT1B LTR MaLR -4 386 175 1846 124 7 49 chr6 28800260 28800567 -153614675 - AluSx SINE Alu -18 294 1 1872 167 44 37 chr6 28800567 28800744 -153614498 - MLT1B LTR MaLR -215 175 1 803 222 57 84 chr6 28800744 28800869 -153614373 - L1M4 LINE L1 -2363 3783 3670 2400 75 0 3 chr6 28800873 28801178 -153614064 - AluY SINE Alu -7 304 1 2084 119 3 0 chr6 28801180 28801475 -153613767 - AluSq SINE Alu -17 296 1 1750 177 30 7 chr6 28801857 28802162 -153613080 - AluJb SINE Alu 0 312 1 2058 128 7 14 chr6 28802484 28802774 -153612468 - AluSx SINE Alu -24 288 1 1239 220 84 40 chr6 28802934 28803406 -153611836 - MER39 LTR ERV1 -6 671 1 181 263 221 0 chr6 28803406 28803501 -153611741 + L2 LINE L2 3142 3257 -56 2175 121 0 10 chr6 28803693 28804000 -153611242 - AluSx SINE Alu -8 304 1 634 113 0 57 chr6 28804102 28804202 -153611040 - MLT2D LTR ERVL 0 414 321 2957 125 15 9 chr6 28804202 28804666 -153610576 + MER31A LTR ERV1 1 467 -18 388 145 0 16 chr6 28804710 28804772 -153610470 - MER31A LTR ERV1 -202 283 223 628 41 0 0 chr6 28805264 28805337 -153609905 - tRNA-Val-GTG tRNA tRNA -3 73 1 496 165 62 0 chr6 28806071 28806168 -153609074 + MLT1B LTR MaLR 288 390 0 6058 258 49 37 chr6 28806169 28807199 -153608043 + ERVL LTR ERVL 1562 2579 -2946 1884 123 77 25 chr6 28807199 28807525 -153607717 - MER61A LTR ERV1 0 343 1 6058 258 49 37 chr6 28807525 28807821 -153607421 + ERVL LTR ERVL 2579 2870 -2655 2403 42 29 29 chr6 28807821 28808132 -153607110 + AluY SINE Alu 1 311 0 6058 258 49 37 chr6 28808132 28808928 -153606314 + ERVL LTR ERVL 2870 3751 -1774 524 105 0 0 chr6 28809032 28809108 -153606134 + tRNA-Ser-TCC tRNA tRNA 8 83 -2 1247 119 0 0 chr6 28809471 28809648 -153605594 + AluSg/x SINE Alu 136 312 0 325 89 0 0 chr6 28809660 28809705 -153605537 + Alu SINE Alu 1 45 -256 1014 73 55 49 chr6 28809705 28809869 -153605373 + AluSg/x SINE Alu 135 299 -10 2433 52 0 26 chr6 28810061 28810369 -153604873 + AluY SINE Alu 1 300 -11 219 130 0 43 chr6 28811116 28811162 -153604080 + (CAAAAA)n Simple_repeat Simple_repeat 1 44 0 21 36 0 0 chr6 28811407 28811435 -153603807 + AT_rich Low_complexity Low_complexity 1 28 0 623 112 92 0 chr6 28811538 28811636 -153603606 - FLAM_C SINE Alu -35 108 2 2258 93 13 13 chr6 28811717 28812030 -153603212 - AluSq SINE Alu 0 313 1 2255 92 3 3 chr6 28812360 28812655 -153602587 + AluSp SINE Alu 5 299 -14 180 0 0 0 chr6 28812692 28812712 -153602530 + (A)n Simple_repeat Simple_repeat 1 20 0 2147 96 0 0 chr6 28812712 28812992 -153602250 + AluSq SINE Alu 1 280 -33 643 27 0 0 chr6 28813020 28813093 -153602149 - tRNA-Arg-CGC tRNA tRNA -3 73 1 2258 84 19 10 chr6 28813349 28813658 -153601584 - AluSx SINE Alu 0 312 1 2350 75 0 7 chr6 28813976 28814281 -153600961 + AluSx SINE Alu 5 307 -5 643 27 0 0 chr6 28814349 28814422 -153600820 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 23 33 0 0 chr6 28814437 28814467 -153600775 + AT_rich Low_complexity Low_complexity 1 30 0 2102 89 7 13 chr6 28814647 28814950 -153600292 - AluSx SINE Alu -11 301 1 1765 169 60 23 chr6 28815058 28815087 -153600155 + L1MB7 LINE L1 5804 5830 -354 2040 105 7 21 chr6 28815087 28815404 -153599838 + AluSx SINE Alu 1 313 0 1765 169 60 23 chr6 28815404 28815722 -153599520 + L1MB7 LINE L1 5830 6165 -19 1379 142 27 108 chr6 28815763 28815942 -153599300 - AluYb8 SINE Alu -13 305 113 2155 87 0 0 chr6 28815942 28816219 -153599023 + AluSq SINE Alu 1 277 -36 306 0 0 0 chr6 28816223 28816257 -153598985 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1379 142 27 108 chr6 28816257 28816404 -153598838 - AluYb8 SINE Alu -208 110 1 1925 129 0 26 chr6 28816441 28816628 -153598614 - AluSx SINE Alu -1 311 134 198 0 0 0 chr6 28816628 28816650 -153598592 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1925 129 0 26 chr6 28816650 28816773 -153598469 - AluSx SINE Alu -178 134 9 187 286 45 45 chr6 28817573 28817685 -153597557 - MER5A DNA MER1_type -1 188 77 502 235 34 8 chr6 28817988 28818107 -153597135 + FLAM_A SINE Alu 2 123 -10 2297 104 0 0 chr6 28818272 28818569 -153596673 + AluSq SINE Alu 1 297 -16 417 193 0 0 chr6 28818570 28818658 -153596584 + L1MB8 LINE L1 5800 5887 -291 393 114 166 74 chr6 28818793 28818906 -153596336 + Charlie5 DNA MER1_type 2396 2532 -92 610 244 0 8 chr6 28818906 28819037 -153596205 + FLAM_A SINE Alu 1 130 -3 393 114 166 74 chr6 28819037 28819098 -153596144 + Charlie5 DNA MER1_type 2532 2586 -38 234 0 0 0 chr6 28819290 28819316 -153595926 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr6 28819315 28819349 -153595893 + (GA)n Simple_repeat Simple_repeat 1 34 0 1847 121 22 4 chr6 28819349 28819622 -153595620 - AluSx SINE Alu -34 278 1 238 214 0 0 chr6 28819717 28819759 -153595483 + tRNA-Thr-ACT tRNA tRNA 15 56 -21 2212 80 28 7 chr6 28820076 28820365 -153594877 + AluSq SINE Alu 1 295 -18 1993 114 3 24 chr6 28820572 28820888 -153594354 - AluSp SINE Alu 0 313 4 581 227 31 25 chr6 28820973 28821136 -153594106 - LTR41 LTR ERVL -594 179 16 1992 138 0 25 chr6 28821303 28821622 -153593620 - AluSx SINE Alu -1 311 1 2209 129 0 0 chr6 28821643 28821953 -153593289 - AluSq SINE Alu -3 310 1 2492 76 3 0 chr6 28822212 28822515 -153592727 - AluSp SINE Alu -6 307 4 216 0 0 0 chr6 28822518 28822542 -153592700 + (T)n Simple_repeat Simple_repeat 1 24 0 229 196 22 0 chr6 28822712 28822758 -153592484 + CT-rich Low_complexity Low_complexity 4 50 0 1590 188 66 43 chr6 28822791 28823171 -153592071 - MLT1B LTR MaLR 0 390 1 1982 128 11 3 chr6 28823208 28823336 -153591906 + AluSx SINE Alu 1 127 -182 207 0 0 0 chr6 28823336 28823359 -153591883 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1982 128 11 3 chr6 28823359 28823537 -153591705 + AluSx SINE Alu 127 309 0 1754 241 85 26 chr6 28823544 28824038 -153591204 + L1MDa LINE L1 31 553 -5987 332 304 99 28 chr6 28824517 28824698 -153590544 - HAL1 LINE L1 -2215 292 99 334 183 12 12 chr6 28824703 28824785 -153590457 + CT-rich Low_complexity Low_complexity 4 85 0 672 240 30 59 chr6 28824970 28825038 -153590204 + L1MC/D LINE L1 24 92 -6331 2053 121 0 57 chr6 28825038 28825370 -153589872 + AluSq SINE Alu 1 313 0 672 240 30 59 chr6 28825370 28825572 -153589670 + L1MC/D LINE L1 92 286 -6137 1073 127 97 2 chr6 28825723 28825966 -153589276 + MER2 DNA MER2_type 22 324 -21 293 206 32 16 chr6 28825966 28826029 -153589213 + L1MC/D LINE L1 404 467 -5956 651 191 0 0 chr6 28826250 28826365 -153588877 - MSTB2 LTR MaLR 0 457 343 1182 194 40 73 chr6 28826365 28826571 -153588671 + L1MC/D LINE L1 4693 4881 -2060 2389 40 0 80 chr6 28826571 28826895 -153588347 - AluY SINE Alu -13 298 1 1182 194 40 73 chr6 28826895 28827085 -153588157 + L1MC/D LINE L1 4881 5076 -1865 229 230 14 0 chr6 28827122 28827196 -153588046 + L1MC/D LINE L1 5060 5134 -1807 381 221 0 84 chr6 28827196 28827265 -153587977 - Tigger5 DNA MER2_type 0 2323 2263 2344 54 3 44 chr6 28827265 28827580 -153587662 + AluY SINE Alu 1 302 -9 381 221 0 84 chr6 28827580 28827605 -153587637 - Tigger5 DNA MER2_type -60 2263 2237 1957 81 81 8 chr6 28827713 28827973 -153587269 + AluSx SINE Alu 15 293 -19 776 236 93 81 chr6 28827995 28828351 -153586891 + L1MC/D LINE L1 6057 6379 -599 1072 129 0 0 chr6 28828979 28829134 -153586108 - AluSg/x SINE Alu -22 290 136 2398 79 0 0 chr6 28829136 28829428 -153585814 - AluSq SINE Alu -4 309 18 284 162 30 45 chr6 28829734 28829812 -153585430 - tRNA-Ser-TCA tRNA tRNA -6 79 3 240 33 0 0 chr6 28830143 28830173 -153585069 - Alu SINE Alu -79 223 194 2363 80 0 3 chr6 28830442 28830741 -153584501 + AluSx SINE Alu 1 298 -14 2250 117 0 0 chr6 28830947 28831254 -153583988 + AluSg SINE Alu 1 307 -3 438 322 82 18 chr6 28831323 28831729 -153583513 + L1ME LINE L1 5389 5817 -353 2321 101 0 10 chr6 28831759 28832066 -153583176 - AluSg SINE Alu -6 304 1 2910 12 0 3 chr6 28832111 28832430 -153582812 + AluYb8 SINE Alu 1 318 0 372 242 15 76 chr6 28833696 28833828 -153581414 - L2 LINE L2 0 3313 3190 222 174 0 0 chr6 28834048 28834094 -153581148 + (TA)n Simple_repeat Simple_repeat 2 47 0 643 41 0 0 chr6 28834685 28834758 -153580484 + tRNA-Val-GTT tRNA tRNA 1 73 -3 2345 90 0 3 chr6 28834792 28835102 -153580140 - AluSc SINE Alu 0 309 1 247 170 0 19 chr6 28835134 28835187 -153580055 + L1MC4 LINE L1 6652 6703 -1339 250 129 32 0 chr6 28835195 28835257 -153579985 + (TA)n Simple_repeat Simple_repeat 1 64 0 2501 52 7 0 chr6 28835258 28835548 -153579694 - AluSp SINE Alu -21 292 1 207 336 48 8 chr6 28836117 28836242 -153579000 - L2 LINE L2 -3 3310 3181 677 0 0 0 chr6 28836746 28836821 -153578421 - tRNA-Ile-ATT tRNA tRNA -2 75 1 198 143 0 0 chr6 28837025 28837060 -153578182 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 277 171 163 39 chr6 28838515 28838644 -153576598 - Charlie2 DNA MER1_type -41 2821 2677 964 271 80 28 chr6 28838672 28838785 -153576457 - Charlie2 DNA MER1_type -353 2509 2403 2509 77 0 0 chr6 28838785 28839084 -153576158 - AluSg SINE Alu -11 299 1 964 271 80 28 chr6 28839084 28839586 -153575656 - Charlie2 DNA MER1_type -459 2403 1862 203 45 68 45 chr6 28839707 28839751 -153575491 + T-rich Low_complexity Low_complexity 1 45 0 317 263 0 12 chr6 28839768 28839848 -153575394 - Charlie2 DNA MER1_type -2684 178 100 1872 95 0 20 chr6 28839848 28840101 -153575141 - AluSg SINE Alu -62 248 1 2388 168 37 56 chr6 28840548 28841067 -153574175 + LTR22 LTR ERVK 1 509 0 2387 83 0 0 chr6 28841292 28841580 -153573662 - AluSc SINE Alu -20 289 2 2609 213 13 13 chr6 28843082 28843715 -153571527 + L1MB7 LINE L1 5552 6184 0 808 177 61 80 chr6 28843727 28843842 -153571400 - L1MC/D LINE L1 -676 5502 5386 2217 96 7 0 chr6 28843842 28844122 -153571120 + AluSx SINE Alu 1 282 -30 198 0 0 0 chr6 28844125 28844147 -153571095 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 808 177 61 80 chr6 28844147 28844287 -153570955 - L1MC/D LINE L1 -794 5384 5284 776 197 72 0 chr6 28844379 28844531 -153570711 - FAM SINE Alu -9 166 4 2282 91 0 3 chr6 28844591 28844887 -153570355 - AluSg SINE Alu -15 295 1 425 324 75 0 chr6 28844902 28845130 -153570112 + L2 LINE L2 2768 3010 -303 939 306 115 32 chr6 28845279 28845992 -153569250 - L2 LINE L2 -17 3296 2530 703 321 18 21 chr6 28846015 28846295 -153568947 - L2 LINE L2 -151 3162 2884 234 342 44 35 chr6 28847737 28847965 -153567277 - L2 LINE L2 -2 3311 3082 210 279 22 34 chr6 28848465 28848644 -153566598 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 584 278 102 75 chr6 28848652 28849092 -153566150 + L2 LINE L2 2566 3012 -301 298 179 21 63 chr6 28849206 28849301 -153565941 + (TCTCTG)n Simple_repeat Simple_repeat 2 92 0 467 251 95 10 chr6 28851231 28851426 -153563816 + MIR SINE MIR 26 239 -23 234 220 0 0 chr6 28851495 28851545 -153563697 + L2 LINE L2 3222 3271 -1 503 231 105 0 chr6 28851642 28851785 -153563457 - MIR SINE MIR -32 230 73 534 129 108 0 chr6 28852729 28852822 -153562420 + MER53 DNA DNA 3 105 -84 633 260 18 55 chr6 28852836 28853055 -153562187 + MIR SINE MIR 52 262 0 320 327 156 65 chr6 28853083 28853404 -153561838 + L2 LINE L2 2904 3253 -19 311 351 74 55 chr6 28853518 28853789 -153561453 + L2 LINE L2 2927 3202 -70 413 239 11 58 chr6 28854912 28855100 -153560142 + (TCTCTG)n Simple_repeat Simple_repeat 1 179 0 210 71 0 0 chr6 28855176 28855204 -153560038 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 321 242 34 34 chr6 28855224 28855373 -153559869 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 249 275 157 22 chr6 28855562 28855740 -153559502 - L1M4b LINE L1 -6655 204 3 * 317 194 0 0 chr6 28855739 28855801 -153559441 - L1ME3 LINE L1 -202 5960 5899 373 215 25 3 chr6 28855805 28855893 -153559349 - MLT1C LTR MaLR -78 389 305 346 260 18 41 chr6 28855915 28856084 -153559158 + (CAGAGA)n Simple_repeat Simple_repeat 2 166 0 1056 191 46 77 chr6 28856113 28856437 -153558805 - MLT1C LTR MaLR -153 314 1 * 2540 186 72 14 chr6 28856437 28856948 -153558294 - MER89 LTR ERV1 -18 541 1 309 315 61 44 chr6 28857210 28857449 -153557793 - L1M4b LINE L1 -5744 1115 640 404 277 142 19 chr6 28857572 28857727 -153557515 - L1M4b LINE L1 -6587 272 99 2220 111 7 0 chr6 28857846 28858143 -153557099 + AluSq SINE Alu 1 299 -14 324 0 0 0 chr6 28858524 28858560 -153556682 + (CA)n Simple_repeat Simple_repeat 2 37 0 2155 88 17 7 chr6 28858630 28858924 -153556318 - AluSg SINE Alu -13 297 1 1951 75 8 4 chr6 28859207 28859461 -153555781 + AluSq SINE Alu 58 312 -1 416 158 0 13 chr6 28860107 28860183 -153555059 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 1957 93 28 75 chr6 28860314 28860635 -153554607 + AluSq SINE Alu 1 306 -7 2271 111 0 0 chr6 28861272 28861569 -153553673 + AluSx SINE Alu 5 301 -11 1959 149 0 7 chr6 28861733 28862034 -153553208 - AluSx SINE Alu -9 303 5 571 211 18 0 chr6 28862545 28862659 -153552583 - L1ME1 LINE L1 -46 6120 6005 2050 167 120 5 chr6 28862659 28862846 -153552396 + MLT1D LTR MaLR 51 215 -290 2068 133 0 10 chr6 28862846 28863146 -153552096 + AluSx SINE Alu 1 297 -15 2050 167 120 5 chr6 28863146 28863366 -153551876 + MLT1D LTR MaLR 215 505 0 1987 219 37 39 chr6 28863366 28863724 -153551518 - L1ME1 LINE L1 -148 6018 5660 1658 202 97 13 chr6 28863724 28863762 -153551480 - MLT2D LTR ERVL 0 414 381 357 24 0 0 chr6 28863762 28863804 -153551438 + (TG)n Simple_repeat Simple_repeat 2 43 0 1658 202 97 13 chr6 28863804 28864147 -153551095 - MLT2D LTR ERVL -33 381 1 1987 219 37 39 chr6 28864147 28864332 -153550910 - L1ME1 LINE L1 -506 5660 5476 1087 233 25 13 chr6 28864347 28864664 -153550578 - L1ME1 LINE L1 -1047 5099 4779 3249 146 93 30 chr6 28864677 28864808 -153550434 + L1MB3 LINE L1 5455 5576 -607 2080 118 13 10 chr6 28864808 28865112 -153550130 - AluSx SINE Alu -7 305 1 3249 146 93 30 chr6 28865112 28865313 -153549929 + L1MB3 LINE L1 5576 5763 -420 2091 109 20 16 chr6 28865313 28865616 -153549626 + AluSp SINE Alu 1 304 -9 3249 146 93 30 chr6 28865616 28865945 -153549297 + L1MB3 LINE L1 5763 6159 -24 387 0 0 0 chr6 28866363 28866406 -153548836 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2129 95 0 3 chr6 28866409 28866692 -153548550 - AluSx SINE Alu -30 282 1 207 88 0 0 chr6 28866771 28866805 -153548437 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 297 275 11 0 chr6 28867086 28867177 -153548065 - L1ME LINE L1 -320 5801 5710 243 0 0 0 chr6 28867609 28867636 -153547606 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 234 62 0 0 chr6 28868543 28868575 -153546667 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2046 131 3 0 chr6 28868967 28869272 -153545970 + AluSq SINE Alu 1 306 -7 244 132 0 73 chr6 28869548 28869616 -153545626 + (TA)n Simple_repeat Simple_repeat 2 64 0 481 42 0 106 chr6 28869627 28869816 -153545426 + (TA)n Simple_repeat Simple_repeat 2 170 0 2630 48 0 6 chr6 28870020 28870331 -153544911 + AluY SINE Alu 1 309 -2 2047 76 7 35 chr6 28870758 28871166 -153544076 - AluSg SINE Alu 0 400 1 263 173 109 36 chr6 28871245 28871355 -153543887 + MER113 DNA MER1_type? 122 239 -282 1007 291 50 48 chr6 28872521 28872981 -153542261 + L1MEc LINE L1 42 502 -5894 595 80 0 0 chr6 28873136 28873211 -153542031 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 209 77 51 0 chr6 28873774 28873813 -153541429 + A-rich Low_complexity Low_complexity 2 42 0 644 27 0 0 chr6 28874386 28874461 -153540781 - tRNA-Ile-ATT tRNA tRNA -2 75 1 38 0 0 0 chr6 28874656 28874694 -153540548 + AT_rich Low_complexity Low_complexity 1 38 0 340 273 41 35 chr6 28875205 28875377 -153539865 - L1MC4a LINE L1 -1866 5942 5770 226 337 12 12 chr6 28875471 28875554 -153539688 - L1MC4a LINE L1 -2176 5632 5550 2135 86 36 13 chr6 28875614 28875917 -153539325 - AluSq SINE Alu -3 310 1 181 171 24 0 chr6 28876228 28876269 -153538973 - L2 LINE L2 -401 2871 2830 2319 88 0 0 chr6 28876373 28876679 -153538563 + AluSx SINE Alu 1 306 -6 240 343 10 10 chr6 28876735 28876837 -153538405 - L2 LINE L2 -515 2799 2698 2137 110 0 26 chr6 28876838 28877148 -153538094 - AluSx SINE Alu -10 302 1 817 340 64 14 chr6 28877203 28877788 -153537454 - L2 LINE L2 -39 3274 2658 2709 36 0 0 chr6 28877819 28878126 -153537116 + AluY SINE Alu 1 307 -4 717 314 18 13 chr6 28878216 28878442 -153536800 - LTR16A LTR ERVL -153 297 71 216 0 0 0 chr6 28878680 28878704 -153536538 + (A)n Simple_repeat Simple_repeat 1 24 0 643 55 0 0 chr6 28879446 28879519 -153535723 - tRNA-Val-GTG tRNA tRNA -3 73 1 893 179 20 20 chr6 28879978 28880173 -153535069 + L1M2 LINE L1 3385 3579 -2567 * 938 151 102 15 chr6 28880162 28880320 -153534922 + L1M2 LINE L1 5552 5734 -566 1480 155 83 35 chr6 28880320 28880610 -153534632 - AluSg SINE Alu -6 304 1 938 151 102 15 chr6 28880610 28880657 -153534585 + L1M2 LINE L1 5734 5775 -525 271 203 40 40 chr6 28880849 28881026 -153534216 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 306 0 0 0 chr6 28881373 28881407 -153533835 + (TG)n Simple_repeat Simple_repeat 2 35 0 7681 98 23 7 chr6 28881841 28882904 -153532338 - HSMAR1 DNA Mariner 0 1287 208 2349 65 10 3 chr6 28882904 28883195 -153532047 + AluSp SINE Alu 1 293 -20 587 107 0 0 chr6 28883261 28883336 -153531906 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 871 108 8 0 chr6 28883535 28883664 -153531578 - AluSp/q SINE Alu -12 301 172 4212 48 21 0 chr6 28884281 28884761 -153530481 + LTR2B LTR ERV1 1 490 0 2165 81 11 0 chr6 28885898 28886171 -153529071 + AluSg SINE Alu 5 280 -30 299 272 19 0 chr6 28886192 28886267 -153528975 + GA-rich Low_complexity Low_complexity 2 81 -25 2048 138 7 0 chr6 28886267 28886572 -153528670 + AluSq SINE Alu 1 307 -6 299 272 19 0 chr6 28886572 28886599 -153528643 + GA-rich Low_complexity Low_complexity 81 106 0 417 251 79 23 chr6 28886781 28886996 -153528246 - L1M4 LINE L1 -919 5227 5001 204 125 0 0 chr6 28887059 28887091 -153528151 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 381 349 96 65 chr6 28888493 28888911 -153526331 + L2 LINE L2 2836 3266 -6 612 82 0 0 chr6 28889802 28889875 -153525367 + tRNA-Val-GTG tRNA tRNA 1 73 -3 316 353 0 8 chr6 28890949 28891071 -153524171 + L2 LINE L2 2679 2799 -515 184 189 156 90 chr6 28891221 28891343 -153523899 + L2 LINE L2 2827 2956 -316 2121 128 3 0 chr6 28891818 28892122 -153523120 - AluSx SINE Alu -7 305 1 573 66 0 26 chr6 28892138 28892214 -153523028 - L1PA7 LINE L1 -4 6150 6077 258 285 77 50 chr6 28892222 28892443 -153522799 + L1MC4a LINE L1 5792 6018 -1790 554 82 0 0 chr6 28893068 28893141 -153522101 + tRNA-Ile-ATT tRNA tRNA 1 73 -4 204 40 0 0 chr6 28893279 28893304 -153521938 + (TTC)n Simple_repeat Simple_repeat 2 26 0 303 49 0 0 chr6 28893692 28893733 -153521509 + (TG)n Simple_repeat Simple_repeat 2 42 0 316 294 34 17 chr6 28894141 28894260 -153520982 + MIR SINE MIR 116 236 -26 659 42 0 0 chr6 28894609 28894681 -153520561 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 1224 220 90 51 chr6 28895891 28896323 -153518919 + Charlie2b DNA MER1_type 819 1267 -1515 1099 214 78 43 chr6 28896322 28896695 -153518547 + Charlie2b DNA MER1_type 2079 2464 -318 * 750 24 0 0 chr6 28897172 28897254 -153517988 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 352 221 76 15 chr6 28897723 28897854 -153517388 + L1MC5 LINE L1 7755 7893 -68 2165 106 3 3 chr6 28897875 28898178 -153517064 - AluSx SINE Alu -9 303 1 3383 248 65 52 chr6 28898197 28899113 -153516129 - L1MC4 LINE L1 -10 8032 7090 2214 105 0 25 chr6 28899113 28899428 -153515814 + AluSg SINE Alu 1 307 -3 3383 248 65 52 chr6 28899428 28899940 -153515302 - L1MC4 LINE L1 -952 7090 6586 2219 86 3 20 chr6 28899942 28900244 -153514998 - AluSp SINE Alu -16 297 1 189 0 0 0 chr6 28900280 28900301 -153514941 + (T)n Simple_repeat Simple_repeat 1 21 0 298 298 10 87 chr6 28900301 28900509 -153514733 - L1MC4a LINE L1 -1269 6539 6348 893 202 179 18 chr6 28900588 28900811 -153514431 - AluY SINE Alu -51 260 2 625 240 159 35 chr6 28900821 28901079 -153514163 - L1MC4a LINE L1 -1780 6028 5739 893 140 53 41 chr6 28901362 28901491 -153513751 + AluJo SINE Alu 1 134 -178 2468 70 3 0 chr6 28901491 28901791 -153513451 + AluSq SINE Alu 1 301 -12 893 140 53 41 chr6 28901791 28901832 -153513410 + AluJo SINE Alu 134 173 -139 884 152 73 6 chr6 28902181 28902345 -153512897 - MER2 DNA MER2_type 0 345 171 529 76 0 0 chr6 28902354 28902420 -153512822 - Charlie3 DNA MER1_type 0 2712 2647 260 98 0 0 chr6 28902418 28902459 -153512783 - Charlie3 DNA MER1_type -2669 41 1 * 971 214 0 0 chr6 28902460 28902628 -153512614 - MER2 DNA MER2_type -177 168 1 563 84 0 0 chr6 28902965 28903036 -153512206 - tRNA-Met-i tRNA tRNA -3 72 2 230 234 62 0 chr6 28903102 28903166 -153512076 + L1ME3 LINE L1 5770 5837 -2205 1644 138 6 77 chr6 28903196 28903530 -153511712 - AluJb SINE Alu 0 312 1 860 224 61 55 chr6 28903548 28903860 -153511382 + L1ME3 LINE L1 5845 6158 -4 224 214 18 18 chr6 28903865 28903921 -153511321 + GA-rich Low_complexity Low_complexity 2 57 0 2600 40 0 0 chr6 28904457 28904758 -153510484 - AluY SINE Alu -10 301 1 278 227 76 0 chr6 28905326 28905392 -153509850 + MER3 DNA MER1_type 41 111 -98 1355 153 33 0 chr6 28905396 28905611 -153509631 + AluJb SINE Alu 87 308 -4 634 200 186 14 chr6 28905611 28905821 -153509421 + MER33 DNA MER1_type 56 301 -23 219 272 246 0 chr6 28906206 28906320 -153508922 - MIR SINE MIR -29 233 92 212 174 0 87 chr6 28906397 28906443 -153508799 + MIR SINE MIR 10 51 -211 4227 132 30 80 chr6 28906470 28907306 -153507936 - L1MA7 LINE L1 -2 6289 5496 451 307 16 0 chr6 28907306 28907433 -153507809 + MIR SINE MIR 47 175 -87 1832 196 23 53 chr6 28907442 28907876 -153507366 + L1ME1 LINE L1 5571 5991 -175 3026 141 57 101 chr6 28912265 28913134 -153502108 + L1MC2 LINE L1 5163 5984 -360 1869 256 49 13 chr6 28913148 28913884 -153501358 + L1MEc LINE L1 1227 2126 -4437 7100 236 50 22 chr6 28913901 28916238 -153499004 + L1ME3A LINE L1 1734 4082 -2133 1737 197 9 6 chr6 28916251 28916596 -153498646 + L1ME3A LINE L1 4759 5104 -1111 616 284 51 37 chr6 28916615 28916911 -153498331 + L1ME3A LINE L1 5716 6015 -224 1145 188 420 2 chr6 28916943 28917476 -153497766 - LTR50 LTR ERVL 0 795 40 669 227 0 15 chr6 28918510 28918642 -153496600 + MER45A DNA AcHobo 45 174 -4 203 325 0 0 chr6 28918746 28918823 -153496419 + T-rich Low_complexity Low_complexity 1 77 0 780 241 103 5 chr6 28918826 28919050 -153496192 + MIR SINE MIR 12 257 -5 2623 43 0 0 chr6 28919660 28919959 -153495283 - AluY SINE Alu -12 299 1 224 286 0 0 chr6 28919985 28920048 -153495194 + T-rich Low_complexity Low_complexity 2 64 0 22 80 0 0 chr6 28920094 28920144 -153495098 + AT_rich Low_complexity Low_complexity 1 50 0 1866 97 0 4 chr6 28920161 28920409 -153494833 - AluSx SINE Alu -3 309 63 24 0 0 0 chr6 28920470 28920494 -153494748 + AT_rich Low_complexity Low_complexity 1 24 0 510 227 140 58 chr6 28921132 28921191 -153494051 - L1ME2 LINE L1 -9 6653 6600 194 0 39 0 chr6 28921191 28921217 -153494025 + (CA)n Simple_repeat Simple_repeat 2 28 0 510 227 140 58 chr6 28921217 28921400 -153493842 - L1ME2 LINE L1 -62 6600 6383 2114 128 26 0 chr6 28921400 28921704 -153493538 - AluSx SINE Alu 0 312 1 510 227 140 58 chr6 28921704 28921738 -153493504 - L1ME2 LINE L1 -279 6383 6353 754 209 70 10 chr6 28921751 28921952 -153493290 - L1ME2 LINE L1 -873 5771 5559 2112 112 7 0 chr6 28921953 28922238 -153493004 - AluSx SINE Alu -11 301 15 2929 226 28 44 chr6 28922238 28923086 -153492156 - L1ME2 LINE L1 -5100 1442 608 318 141 0 0 chr6 28923086 28923143 -153492099 - MLT2C1 LTR ERVL 0 397 350 678 143 18 0 chr6 28925055 28925167 -153490075 + AluJb SINE Alu 199 312 0 29 0 0 0 chr6 28925219 28925248 -153489994 + AT_rich Low_complexity Low_complexity 1 29 0 770 187 0 0 chr6 28925836 28925959 -153489283 + MER49 LTR ERV1 100 222 -701 1064 130 31 0 chr6 28925959 28926120 -153489122 + AluSg/x SINE Alu 131 296 -14 216 0 0 0 chr6 28926120 28926144 -153489098 + (GA)n Simple_repeat Simple_repeat 1 24 0 3774 179 4 35 chr6 28926144 28926878 -153488364 + MER49 LTR ERV1 213 923 0 481 212 45 45 chr6 28926977 28927222 -153488020 + L1ME3A LINE L1 3113 3357 -2789 2140 106 3 0 chr6 28927224 28927550 -153487692 + AluSp SINE Alu 1 327 0 782 270 36 12 chr6 28927554 28927887 -153487355 + L1ME3A LINE L1 3304 3644 -2502 1986 156 7 0 chr6 28928194 28928489 -153486753 - AluSx SINE Alu -15 297 1 426 206 30 6 chr6 28928569 28928686 -153486556 + L1ME3A LINE L1 6051 6165 -5 649 313 61 14 chr6 28928727 28929318 -153485924 + L1ME3A LINE L1 4412 5030 -1116 * 1151 271 57 25 chr6 28929316 28929829 -153485413 + L1ME3A LINE L1 5629 6157 -13 989 221 113 7 chr6 28930315 28930738 -153484504 - MLT1F LTR MaLR 0 542 3 1988 154 3 0 chr6 28930944 28931242 -153484000 - AluSq SINE Alu -14 299 1 231 88 0 0 chr6 28931521 28931555 -153483687 + (T)n Simple_repeat Simple_repeat 1 34 0 650 0 0 0 chr6 28932161 28932233 -153483009 - tRNA-Met-i tRNA tRNA -3 72 1 1774 174 62 30 chr6 28932646 28933084 -153482158 + Charlie1 DNA MER1_type 1585 2036 -725 419 136 23 0 chr6 28933103 28933191 -153482051 - L1MA5 LINE L1 -7 6293 6204 2061 110 0 7 chr6 28933762 28934054 -153481188 + AluSx SINE Alu 1 290 -22 621 66 0 0 chr6 28934163 28934239 -153481003 - tRNA-Lys-AAA tRNA tRNA 0 76 1 2334 65 6 46 chr6 28934610 28934933 -153480309 + AluSx SINE Alu 1 310 -2 748 233 176 17 chr6 28935107 28935567 -153479675 - Charlie2 DNA MER1_type -34 2828 2296 327 194 0 15 chr6 28935875 28935942 -153479300 - tRNA-Met-i tRNA tRNA -9 66 1 351 255 191 13 chr6 28936522 28936679 -153478563 - MER69 DNA AcHobo -875 351 167 357 289 67 47 chr6 28936695 28936844 -153478398 + L2 LINE L2 2911 3062 -210 1336 263 198 28 chr6 28936979 28937057 -153478185 + L2 LINE L2 2197 2260 -1053 2156 118 0 20 chr6 28937057 28937362 -153477880 - AluSx SINE Alu -13 299 1 1336 263 198 28 chr6 28937362 28938245 -153476997 + L2 LINE L2 2260 3310 -3 327 323 141 5 chr6 28938696 28938894 -153476348 - L1MC4a LINE L1 -1629 6179 5955 285 270 0 0 chr6 28938902 28938976 -153476266 - L1MC4a LINE L1 -1911 5897 5824 2222 121 0 0 chr6 28939194 28939500 -153475742 - AluSx SINE Alu -6 306 1 1008 261 122 30 chr6 28939560 28939938 -153475304 - L1ME3A LINE L1 -220 5950 5513 2282 49 39 0 chr6 28939938 28940222 -153475020 + AluY SINE Alu 1 295 -16 1008 261 122 30 chr6 28940222 28940345 -153474897 - L1ME3A LINE L1 -657 5513 5403 815 263 53 88 chr6 28940357 28940903 -153474339 + MLT1G1 LTR MaLR 1 594 -1 2360 69 3 7 chr6 28940903 28941207 -153474035 - AluY SINE Alu -8 303 1 254 253 70 21 chr6 28941230 28941410 -153473832 - L1ME3A LINE L1 -772 5374 5188 2225 96 0 0 chr6 28941431 28941766 -153473476 - AluSc SINE Alu 0 335 1 572 258 57 18 chr6 28942057 28942340 -153472902 - L1ME3A LINE L1 -1336 4810 4517 2078 121 0 13 chr6 28942360 28942665 -153472577 - AluSq SINE Alu -12 301 1 22 56 0 0 chr6 28942667 28942703 -153472539 + AT_rich Low_complexity Low_complexity 1 36 0 390 277 102 7 chr6 28942718 28942855 -153472387 - MIR SINE MIR -52 210 61 2296 98 0 0 chr6 28942867 28943162 -153472080 - AluSg SINE Alu -15 295 1 919 190 0 13 chr6 28943761 28943919 -153471323 - AluJb SINE Alu -156 156 1 1849 213 5 11 chr6 28944749 28945116 -153470126 - MLT1A1 LTR MaLR 0 365 1 323 158 49 49 chr6 28945201 28945283 -153469959 - L1MCa LINE L1 -4350 2076 1995 25 0 0 0 chr6 28946149 28946174 -153469068 + AT_rich Low_complexity Low_complexity 1 25 0 30 45 0 0 chr6 28946209 28946253 -153468989 + AT_rich Low_complexity Low_complexity 1 44 0 1815 168 0 43 chr6 28946362 28946684 -153468558 + AluJb SINE Alu 1 308 -4 8879 197 68 83 chr6 28946693 28948614 -153466628 + L1MA4 LINE L1 1 1867 -4982 2313 114 3 0 chr6 28948614 28948913 -153466329 + AluSg SINE Alu 1 300 -10 8879 197 68 83 chr6 28948913 28949898 -153465344 + L1MA4 LINE L1 1867 2865 -3984 12949 173 37 14 chr6 28949902 28951524 -153463718 + L1MA4 LINE L1 3098 4680 -2322 3108 103 64 93 chr6 28951524 28952146 -153463096 + LTR14B LTR ERVK 5 608 0 12949 173 37 14 chr6 28952146 28954156 -153461086 + L1MA4 LINE L1 4680 6824 -178 583 196 0 0 chr6 28954156 28954263 -153460979 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 3369 128 73 59 chr6 28954254 28954995 -153460247 + Tigger3(Golem) DNA MER2_type 2278 3028 -1 608 153 125 0 chr6 28954995 28955139 -153460103 + L1MA4 LINE L1 6821 6982 -20 378 313 28 0 chr6 28955164 28955308 -153459934 - L1ME LINE L1 -424 5697 5550 355 230 86 29 chr6 28956083 28956222 -153459020 - L1ME3A LINE L1 -1700 4446 4300 620 298 0 18 chr6 28957135 28957303 -153457939 - MIR3 SINE MIR -34 174 10 479 261 83 57 chr6 28960194 28960424 -153454818 - HAL1 LINE L1 -1744 763 528 215 77 0 26 chr6 28960546 28960585 -153454657 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 231 278 243 6 chr6 28960873 28961042 -153454200 - MIR SINE MIR -4 258 50 1612 99 0 5 chr6 28961210 28961421 -153453821 - AluSp SINE Alu -16 297 88 197 377 29 0 chr6 28962200 28962269 -153452973 - MIR SINE MIR -189 73 3 1550 150 139 4 chr6 28962720 28962993 -153452249 + AluJb SINE Alu 2 311 -1 21 0 0 0 chr6 28963015 28963036 -153452206 + AT_rich Low_complexity Low_complexity 1 21 0 2059 98 7 59 chr6 28963160 28963467 -153451775 - AluSx SINE Alu -21 291 1 768 248 119 0 chr6 28963545 28963755 -153451487 + MIR SINE MIR 18 252 -10 755 343 28 71 chr6 28964352 28964541 -153450701 - L2 LINE L2 -12 3260 3065 2297 107 0 0 chr6 28964541 28964831 -153450411 + AluSx SINE Alu 1 290 -22 755 343 28 71 chr6 28964831 28965524 -153449718 - L2 LINE L2 -207 3065 2412 1757 183 6 6 chr6 28965685 28965996 -153449246 - AluSx SINE Alu -1 311 1 300 303 30 26 chr6 28966008 28966242 -153449000 + L1MEc LINE L1 1842 2076 -4320 304 225 44 148 chr6 28966429 28966611 -153448631 - L2 LINE L2 -3 3310 3148 1944 133 127 8 chr6 28966612 28966974 -153448268 - MSTA LTR MaLR -2 426 22 * 5595 177 90 44 chr6 28966972 28968383 -153446859 + MER52A LTR ERV1 217 1755 0 206 31 0 31 chr6 28969083 28969115 -153446127 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 733 200 130 0 chr6 28969469 28969654 -153445588 - MER3 DNA MER1_type 0 209 1 2082 169 31 78 chr6 28969785 28969977 -153445265 + MSTB1 LTR MaLR 5 204 -228 2143 93 4 0 chr6 28969977 28970257 -153444985 - AluSc SINE Alu -28 281 1 2082 169 31 78 chr6 28970257 28970513 -153444729 + MSTB1 LTR MaLR 204 432 0 186 235 59 59 chr6 28970656 28970724 -153444518 + L2 LINE L2 3242 3309 -4 548 307 129 59 chr6 28970782 28971186 -153444056 - L2 LINE L2 -17 3296 2865 259 403 28 7 chr6 28971311 28971455 -153443787 + MIR3 SINE MIR 3 149 -59 1051 170 22 0 chr6 28971564 28971746 -153443496 + MER5A DNA MER1_type 1 186 -3 2424 65 0 40 chr6 28971860 28972183 -153443059 - AluY SINE Alu -1 310 1 606 230 143 80 chr6 28972255 28972555 -153442687 + MER20B DNA MER1_type 79 397 -386 571 152 76 58 chr6 28972580 28972751 -153442491 + MER20B DNA MER1_type 610 783 0 435 207 240 40 chr6 28972753 28972903 -153442339 - MIR SINE MIR -61 201 22 1136 224 88 46 chr6 28972907 28973341 -153441901 + L1MD2 LINE L1 5662 6113 -246 342 0 0 0 chr6 28973562 28973600 -153441642 + (TG)n Simple_repeat Simple_repeat 2 39 0 279 229 86 0 chr6 28974748 28974818 -153440424 - MIR SINE MIR 0 262 187 509 187 66 42 chr6 28974818 28974941 -153440301 + LTR65 LTR ERV1 1 130 -539 2215 114 71 0 chr6 28974941 28975293 -153439949 - MER51B LTR ERV1 0 377 1 509 187 66 42 chr6 28975293 28975335 -153439907 + LTR65 LTR ERV1 130 170 -499 365 171 29 0 chr6 28975443 28975513 -153439729 - MIR SINE MIR -109 153 82 238 323 177 0 chr6 28975549 28975645 -153439597 - MIR SINE MIR -76 132 20 1493 111 27 13 chr6 28975828 28976053 -153439189 + AluSg/x SINE Alu 77 304 -6 222 193 18 18 chr6 28976140 28976197 -153439045 + MIR SINE MIR 172 228 -34 487 122 89 0 chr6 28976532 28976622 -153438620 + MER4A LTR ERV1 1 98 -566 1508 146 11 75 chr6 28976622 28976991 -153438251 + MER4A LTR ERV1 261 664 0 273 246 0 15 chr6 28977081 28977146 -153438096 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 453 273 31 8 chr6 28977303 28977431 -153437811 - L1ME2 LINE L1 -36 6128 5998 3395 72 0 20 chr6 28977432 28977889 -153437353 - LTR7 LTR ERV1 -2 448 1 763 201 87 7 chr6 28977971 28978120 -153437122 + FRAM SINE Alu 1 160 -16 2361 144 28 104 chr6 28978735 28979243 -153435999 + L1MCa LINE L1 299 767 -5659 519 248 64 0 chr6 28979243 28979352 -153435890 + AluJ SINE Alu 54 169 -143 7021 128 201 26 chr6 28979355 28980798 -153434444 - pTR5 LTR ERV1 0 2438 743 779 154 8 0 chr6 28980798 28980921 -153434321 + AluJ SINE Alu 166 289 -23 2355 90 0 7 chr6 28980927 28981227 -153434015 + AluSx SINE Alu 1 298 -14 2058 90 3 68 chr6 28981227 28981549 -153433693 + AluSq SINE Alu 1 301 -12 6286 175 77 59 chr6 28981569 28982014 -153433228 + L1MCa LINE L1 762 1198 -5228 2151 138 0 0 chr6 28982014 28982318 -153432924 + AluSx SINE Alu 1 304 -8 6286 175 77 59 chr6 28982318 28982598 -153432644 + L1MCa LINE L1 1198 1472 -4954 1590 209 24 34 chr6 28982598 28982976 -153432266 - MLT1A2 LTR MaLR 0 374 1 6286 175 77 59 chr6 28982976 28983358 -153431884 + L1MCa LINE L1 1472 1846 -4580 2367 109 0 0 chr6 28983358 28983660 -153431582 + AluSx SINE Alu 1 302 -10 6286 175 77 59 chr6 28983660 28983912 -153431330 + L1MCa LINE L1 1846 2092 -4334 2368 88 7 0 chr6 28983912 28984208 -153431034 + AluSq SINE Alu 1 298 -15 6286 175 77 59 chr6 28984208 28985354 -153429888 + L1MCa LINE L1 2092 3316 -3110 3949 177 77 34 chr6 28985343 28987062 -153428180 + L1MB4 LINE L1 4395 6174 -6 * 257 301 96 51 chr6 28987562 28987718 -153427524 + MER5A DNA MER1_type 27 189 0 768 144 14 14 chr6 28988558 28988704 -153426538 - MIR SINE MIR -22 240 95 2055 81 30 0 chr6 28988706 28988977 -153426265 + AluSq SINE Alu 1 279 -34 2051 86 0 11 chr6 28990378 28990646 -153424596 - AluSq SINE Alu -10 303 39 188 389 53 0 chr6 28991225 28991338 -153423904 - MIR3 SINE MIR -48 160 42 1972 128 14 11 chr6 28991434 28991716 -153423526 - AluSx SINE Alu -17 295 13 403 293 96 6 chr6 28991975 28992132 -153423110 + MIR SINE MIR 49 219 -43 2082 145 129 0 chr6 28992360 28992739 -153422503 + MSTA LTR MaLR 1 428 0 9273 152 31 15 chr6 28992741 28994364 -153420878 + MSTA-int LTR MaLR 3 1651 0 2260 155 89 0 chr6 28994364 28994757 -153420485 + MSTA LTR MaLR 1 428 0 1775 193 242 22 chr6 28995299 28995619 -153419623 - MER20B DNA MER1_type -61 722 474 1996 161 0 7 chr6 28995619 28995923 -153419319 + AluJb SINE Alu 1 302 -10 1775 193 242 22 chr6 28995923 28996194 -153419048 - MER20B DNA MER1_type -309 474 1 2334 127 22 103 chr6 28996235 28996699 -153418543 - MSTB LTR MaLR 0 426 1 2248 107 0 0 chr6 28996813 28997102 -153418140 - AluSx SINE Alu -19 293 5 2518 60 0 3 chr6 28997753 28998053 -153417189 + AluY SINE Alu 1 299 -12 214 306 157 9 chr6 28998288 28998396 -153416846 - MER5A DNA MER1_type -30 159 36 191 77 0 77 chr6 28998396 28998435 -153416807 + (TATG)n Simple_repeat Simple_repeat 3 38 0 333 246 141 7 chr6 28998765 28998907 -153416335 + MIR3 SINE MIR 42 202 -6 212 197 0 28 chr6 29000756 29000827 -153414415 + CT-rich Low_complexity Low_complexity 4 72 0 1509 194 49 7 chr6 29001777 29002065 -153413177 - AluJo SINE Alu -9 303 4 362 250 21 0 chr6 29002974 29003070 -153412172 + MIR SINE MIR 164 261 -1 2180 118 89 124 chr6 29003722 29003911 -153411331 + Tigger3b DNA MER2_type 1 195 -2833 2135 120 7 0 chr6 29003911 29004203 -153411039 + AluSx SINE Alu 1 294 -18 2180 118 89 124 chr6 29004203 29004531 -153410711 + Tigger3b DNA MER2_type 195 500 -731 4005 176 40 1 chr6 29004539 29005185 -153410057 - HERVL18 LTR ERVL -2659 3388 2718 1441 162 11 2 chr6 29005182 29005456 -153409786 - HERVL18 LTR ERVL -3595 2452 2119 * 1062 164 14 19 chr6 29005455 29005803 -153409439 - HERVL18 LTR ERVL -4237 1810 1401 * 935 213 18 0 chr6 29005845 29006014 -153409228 - HERVL18 LTR ERVL -5382 665 494 * 1502 189 11 11 chr6 29005999 29006284 -153408958 - HERVL18 LTR ERVL -5744 303 19 3147 124 76 44 chr6 29006305 29006900 -153408342 - LTR18B LTR ERVL 0 614 1 2636 55 0 3 chr6 29008393 29008705 -153406537 + AluY SINE Alu 1 311 0 2958 125 31 37 chr6 29008867 29009380 -153405862 + Tigger3b DNA MER2_type 723 1232 0 2170 113 0 0 chr6 29009717 29010008 -153405234 - AluSx SINE Alu -21 291 1 858 176 80 122 chr6 29010183 29010535 -153404707 - MLT1A2 LTR MaLR -12 362 26 1532 121 9 0 chr6 29011523 29011738 -153403504 - LTR62 LTR ERVK -2 717 501 1421 94 146 0 chr6 29011738 29011950 -153403292 - MER4E LTR ERV1 0 779 537 706 188 0 0 chr6 29011953 29012070 -153403172 + FRAM SINE Alu 50 166 -10 2279 80 3 71 chr6 29012131 29012457 -153402785 + AluSp SINE Alu 1 304 -9 602 256 35 42 chr6 29012617 29012902 -153402340 - L1MC5 LINE L1 -33 7928 7646 1666 264 54 34 chr6 29013288 29013910 -153401332 + L2 LINE L2 2491 3131 -182 320 228 24 57 chr6 29014097 29014220 -153401022 + MIR SINE MIR 63 181 -81 371 253 147 0 chr6 29014897 29014992 -153400250 + MIR SINE MIR 11 119 -143 1706 154 104 17 chr6 29014992 29015349 -153399893 - MLT1C LTR MaLR 0 467 80 326 331 39 16 chr6 29015385 29015512 -153399730 + MIR SINE MIR 115 244 -18 181 354 62 0 chr6 29015838 29015934 -153399308 + MIR SINE MIR 40 141 -67 256 250 71 9 chr6 29015997 29016109 -153399133 - MIR SINE MIR -70 192 74 208 330 36 27 chr6 29016767 29016879 -153398363 + MIR3 SINE MIR 82 194 -14 262 239 11 43 chr6 29016910 29017002 -153398240 + L1ME4a LINE L1 5838 5926 -195 390 319 52 0 chr6 29017686 29017934 -153397308 - L1ME LINE L1 -644 5518 5258 22 0 0 0 chr6 29018127 29018149 -153397093 + AT_rich Low_complexity Low_complexity 1 22 0 1928 114 10 33 chr6 29018283 29018582 -153396660 - AluSx SINE Alu -18 294 3 525 44 0 0 chr6 29018704 29018772 -153396470 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 927 264 75 12 chr6 29018800 29019133 -153396109 + L2 LINE L2 2414 2767 -547 233 337 105 11 chr6 29019162 29019352 -153395890 + L2 LINE L2 2946 3153 -160 3541 161 35 5 chr6 29019725 29020585 -153394657 + L1MC1 LINE L1 5396 6326 -7 580 269 92 17 chr6 29020620 29020858 -153394384 + L1MC5 LINE L1 7187 7442 -519 1315 140 5 19 chr6 29020962 29021176 -153394066 + AluJo SINE Alu 1 211 -101 802 215 0 0 chr6 29021179 29021406 -153393836 + AluJb SINE Alu 145 312 0 4681 126 94 122 chr6 29023152 29024568 -153390674 - pTR5 LTR ERV1 0 2438 743 400 252 100 56 chr6 29024569 29024819 -153390423 + L1MC5 LINE L1 7668 7928 -33 463 226 73 0 chr6 29026011 29026135 -153389107 + L1MC4a LINE L1 5410 5542 -2266 256 285 135 34 chr6 29026198 29026405 -153388837 + L1MC4a LINE L1 5805 6032 -1776 369 218 51 0 chr6 29026976 29027054 -153388188 + MER20B DNA MER1_type 56 137 -646 273 333 136 12 chr6 29027110 29027368 -153387874 + L2 LINE L2 2441 2730 -584 215 250 126 50 chr6 29027849 29028009 -153387233 + MIR SINE MIR 1 179 -29 419 181 14 0 chr6 29028249 29028321 -153386921 + MLT1F1 LTR MaLR 137 209 -358 250 164 137 41 chr6 29028860 29028933 -153386309 + LTR33 LTR ERVL 12 91 -430 3167 122 32 21 chr6 29028942 29029473 -153385769 - MER34 LTR ERV1 -5 537 1 1269 213 142 29 chr6 29029543 29029960 -153385282 + MLT1D LTR MaLR 42 505 0 22 0 0 0 chr6 29030659 29030681 -153384561 + AT_rich Low_complexity Low_complexity 1 22 0 1435 172 42 66 chr6 29030999 29031407 -153383835 - LTR52 LTR ERVL -12 409 12 370 228 133 33 chr6 29031759 29031838 -153383404 + L2 LINE L2 2931 3001 -312 1521 256 77 40 chr6 29031838 29032411 -153382831 + MLT1G1 LTR MaLR 1 594 -1 370 228 133 33 chr6 29032411 29032511 -153382731 + L2 LINE L2 3001 3128 -185 2875 146 43 2 chr6 29032511 29033019 -153382223 - L1MB4 LINE L1 0 6180 5652 854 129 35 6 chr6 29033019 29033189 -153382053 + CT-rich Low_complexity Low_complexity 4 178 0 1002 143 0 0 chr6 29033192 29033339 -153381903 - FRAM SINE Alu -7 169 23 4520 199 48 14 chr6 29033341 29034855 -153380387 - L1MB4 LINE L1 -513 5667 4113 600 233 23 0 chr6 29034877 29035006 -153380236 - MER54A LTR ERVL -286 615 484 1204 218 17 70 chr6 29035172 29035344 -153379898 - L1MB4 LINE L1 -2028 4118 3939 2141 108 37 0 chr6 29035344 29035640 -153379602 - AluSx SINE Alu -5 307 1 1204 218 17 70 chr6 29035640 29035870 -153379372 - L1MB4 LINE L1 -2207 3939 3737 189 250 192 29 chr6 29035870 29035974 -153379268 + L2 LINE L2 3121 3241 -72 2124 210 112 19 chr6 29036330 29036849 -153378393 + MLT1E2 LTR MaLR 60 626 0 186 408 75 8 chr6 29037211 29037331 -153377911 + L2 LINE L2 2925 3052 -220 201 289 89 56 chr6 29037630 29037720 -153377522 - L2 LINE L2 -964 2350 2258 333 308 77 0 chr6 29038222 29038313 -153376929 + MER5A DNA MER1_type 8 105 -84 3614 150 89 11 chr6 29038405 29039059 -153376183 + MER44D DNA MER2_type 1 705 0 225 310 70 0 chr6 29039513 29039584 -153375658 - MIR SINE MIR -139 123 48 2472 58 0 6 chr6 29039898 29040210 -153375032 + AluY SINE Alu 1 310 -1 433 284 95 70 chr6 29040352 29040395 -153374847 + MIR SINE MIR 14 54 -208 1669 179 30 3 chr6 29040395 29040691 -153374551 - AluJb SINE Alu -8 304 1 433 284 95 70 chr6 29040691 29040890 -153374352 + MIR SINE MIR 54 262 0 1613 141 94 4 chr6 29041514 29041770 -153373472 + AluJo SINE Alu 1 279 -33 385 199 14 14 chr6 29041771 29041917 -153373325 + GA-rich Low_complexity Low_complexity 1 146 0 1034 96 13 0 chr6 29041932 29042088 -153373154 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 4158 272 76 45 chr6 29042324 29044029 -153371213 + L2 LINE L2 355 2113 -1201 344 185 46 0 chr6 29044036 29044101 -153371141 + L2 LINE L2 2270 2337 -977 1619 228 39 5 chr6 29044123 29044539 -153370703 + L1ME3A LINE L1 5486 5915 -255 1659 184 68 26 chr6 29044539 29044919 -153370323 + MSTD LTR MaLR 1 396 0 4462 241 96 32 chr6 29044926 29046039 -153369203 + MSTD-int LTR MaLR 255 1476 -259 1554 103 0 0 chr6 29046039 29046233 -153369009 + AluSq SINE Alu 1 194 -119 4462 241 96 32 chr6 29046233 29046511 -153368731 + MSTD-int LTR MaLR 1476 1735 0 873 193 97 78 chr6 29046513 29046607 -153368635 + MSTD LTR MaLR 3 94 -302 2422 100 0 0 chr6 29046607 29046918 -153368324 + AluSq SINE Alu 1 311 -2 873 193 97 78 chr6 29046918 29047092 -153368150 + MSTD LTR MaLR 94 276 -120 283 287 47 78 chr6 29047112 29047241 -153368001 + L1ME3A LINE L1 5968 6092 -78 1431 285 112 19 chr6 29047275 29047942 -153367300 + L2 LINE L2 2335 3052 -261 1871 143 13 17 chr6 29048648 29048948 -153366294 + AluJo SINE Alu 1 299 -13 356 203 80 116 chr6 29049353 29049462 -153365780 - MER5B DNA MER1_type -33 145 40 1563 172 57 25 chr6 29049462 29049816 -153365426 + MLT1A1 LTR MaLR 1 365 0 356 203 80 116 chr6 29049816 29049844 -153365398 - MER5B DNA MER1_type -138 40 13 296 319 86 26 chr6 29050220 29050336 -153364906 - MIR3 SINE MIR -36 172 50 2042 157 0 0 chr6 29055152 29055452 -153359790 + AluJb SINE Alu 1 300 -12 476 326 7 0 chr6 29056703 29056841 -153358401 + MIR SINE MIR 124 262 0 180 111 0 0 chr6 29057043 29057070 -153358172 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 5284 143 70 33 chr6 29057187 29058558 -153356684 + L1MA5 LINE L1 4904 6296 -4 559 281 54 9 chr6 29058760 29058984 -153356258 + L1MC/D LINE L1 5557 5790 -2018 1480 182 0 16 chr6 29059057 29059315 -153355927 + AluJo SINE Alu 1 254 -58 682 306 71 0 chr6 29059537 29059860 -153355382 + L1MEc LINE L1 36 381 -6015 350 271 21 0 chr6 29059876 29059972 -153355270 + MER63A DNA MER1_type 84 181 -29 509 266 76 22 chr6 29060349 29060626 -153354616 + MER68 LTR ERV1 311 562 0 5062 224 93 53 chr6 29060707 29061380 -153353862 + L1MEc LINE L1 49 694 -5702 2252 88 0 3 chr6 29061380 29061674 -153353568 - AluY SINE Alu -18 293 1 5062 224 93 53 chr6 29061674 29061759 -153353483 + L1MEc LINE L1 694 774 -5622 2270 101 0 7 chr6 29061759 29062056 -153353186 + AluSg SINE Alu 1 295 -15 5062 224 93 53 chr6 29062056 29062252 -153352990 + L1MEc LINE L1 774 961 -5435 1751 38 0 0 chr6 29062252 29062465 -153352777 + L1PA4 LINE L1 5943 6155 0 5062 224 93 53 chr6 29062465 29063132 -153352110 + L1MEc LINE L1 961 1600 -4796 883 206 65 42 chr6 29063132 29063346 -153351896 - MER20 DNA MER1_type 0 219 1 5062 224 93 53 chr6 29063346 29063911 -153351331 + L1MEc LINE L1 1600 2325 -4071 2469 66 0 3 chr6 29063911 29064214 -153351028 + AluY SINE Alu 1 302 -9 580 197 148 0 chr6 29064219 29064341 -153350901 + MLT1A1 LTR MaLR 173 312 -53 285 29 0 0 chr6 29064341 29064375 -153350867 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2436 72 0 3 chr6 29064379 29064686 -153350556 + AluY SINE Alu 1 306 -5 1677 246 93 6 chr6 29064687 29065078 -153350164 + L1MEc LINE L1 2278 2730 -3485 1948 180 102 34 chr6 29065078 29065313 -153349929 + MLT1D LTR MaLR 1 219 -286 294 29 0 0 chr6 29065313 29065348 -153349894 + (GA)n Simple_repeat Simple_repeat 2 36 0 1948 180 102 34 chr6 29065348 29065585 -153349657 + MLT1D LTR MaLR 219 505 0 1677 246 93 6 chr6 29065585 29065733 -153349509 + L1MEc LINE L1 2730 2864 -3351 407 205 24 13 chr6 29065735 29065861 -153349381 + L1MA10 LINE L1 6039 6298 0 2067 113 0 7 chr6 29066490 29066781 -153348461 + AluSg SINE Alu 1 289 -21 2127 230 60 21 chr6 29067474 29068191 -153347051 + L1ME3 LINE L1 5418 6162 0 293 374 35 0 chr6 29068226 29068341 -153346901 + MIR SINE MIR 23 141 -67 2328 97 0 0 chr6 29068537 29068835 -153346407 + AluSg SINE Alu 1 298 -12 200 143 0 0 chr6 29069909 29069937 -153345305 + MIR SINE MIR 219 246 -16 1679 335 143 19 chr6 29070184 29071184 -153344058 + L3 LINE CR1 452 1575 -2 24 32 0 0 chr6 29072320 29072351 -153342891 + GC_rich Low_complexity Low_complexity 1 31 0 2348 69 20 3 chr6 29072546 29072851 -153342391 + AluSg SINE Alu 1 310 0 349 228 73 16 chr6 29072905 29073028 -153342214 + MER112 DNA MER1_type 106 235 -25 2554 55 0 3 chr6 29073031 29073338 -153341904 - AluSx SINE Alu -6 306 1 355 195 0 0 chr6 29073675 29073752 -153341490 + MLT1A1-int LTR MaLR 206 282 -1089 * 4983 147 24 69 chr6 29073747 29074932 -153340310 + L1MC1 LINE L1 5186 6315 -18 1513 188 9 6 chr6 29074948 29075268 -153339974 + MLT1A1-int LTR MaLR 266 586 -785 525 222 24 8 chr6 29075322 29075448 -153339794 - FLAM_C SINE Alu -15 128 1 976 191 12 0 chr6 29075792 29075965 -153339277 + AluJo SINE Alu 113 287 -25 1312 205 94 58 chr6 29076249 29076922 -153338320 - LTR48 LTR ERV1 0 787 1 214 265 0 15 chr6 29076972 29077101 -153338141 + CT-rich Low_complexity Low_complexity 1 127 0 735 12 0 0 chr6 29077988 29078070 -153337172 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 676 0 0 0 chr6 29078850 29078922 -153336320 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 1918 198 82 108 chr6 29079118 29079333 -153335909 + L1MC4 LINE L1 7328 7547 -495 242 65 0 0 chr6 29079333 29079364 -153335878 - HSMAR1 DNA Mariner -1255 32 2 1918 198 82 108 chr6 29079364 29079386 -153335856 + L1MC4 LINE L1 7547 7568 -474 366 23 0 0 chr6 29079386 29079429 -153335813 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1918 198 82 108 chr6 29079429 29079894 -153335348 + L1MC4 LINE L1 7568 8042 0 2337 89 3 0 chr6 29080417 29080719 -153334523 + AluSx SINE Alu 1 303 -9 1877 112 93 0 chr6 29080993 29081262 -153333980 - AluSg SINE Alu -16 294 1 305 335 43 34 chr6 29081263 29081588 -153333654 + L1ME LINE L1 90 417 -5653 3073 256 63 92 chr6 29081900 29082374 -153332868 + L1M4 LINE L1 2839 3326 -2820 225 122 0 0 chr6 29082374 29082415 -153332827 - LTR66 LTR ERVL -172 438 398 3073 256 63 92 chr6 29082415 29082529 -153332713 + L1M4 LINE L1 3326 3442 -2704 2494 84 0 0 chr6 29082529 29082839 -153332403 + AluSx SINE Alu 1 310 -2 3073 256 63 92 chr6 29082839 29083270 -153331972 + L1M4 LINE L1 3442 3884 -2262 6482 76 8 67 chr6 29083270 29084713 -153330529 - SVA Other Other -551 1386 433 3073 256 63 92 chr6 29084713 29084780 -153330462 + L1M4 LINE L1 3884 3951 -2195 5424 67 36 55 chr6 29084780 29085605 -153329637 - SVA Other Other -520 866 57 264 30 0 0 chr6 29085605 29085638 -153329604 + (GGGAGA)n Simple_repeat Simple_repeat 1 33 0 3073 256 63 92 chr6 29085638 29086137 -153329105 + L1M4 LINE L1 3950 4404 -1742 1658 185 17 20 chr6 29086137 29086434 -153328808 + AluJb SINE Alu 5 300 -12 3073 256 63 92 chr6 29086434 29086760 -153328482 + L1M4 LINE L1 4404 4738 -1408 700 283 48 10 chr6 29086811 29087101 -153328141 + L1M4 LINE L1 4944 5244 -902 623 178 0 0 chr6 29087154 29087255 -153327987 - AluJ/FLAM SINE Alu -210 102 2 2154 118 0 7 chr6 29087263 29087559 -153327683 - AluSg SINE Alu -16 294 1 1052 163 0 11 chr6 29087863 29088047 -153327195 - AluJb SINE Alu -1 311 130 2382 112 0 0 chr6 29088059 29088371 -153326871 - AluSx SINE Alu 0 312 1 2200 88 27 3 chr6 29088409 29088706 -153326536 - AluSx SINE Alu -8 304 1 2297 110 0 0 chr6 29088864 29089173 -153326069 + AluSx SINE Alu 1 309 -3 1093 141 0 0 chr6 29089258 29089414 -153325828 - MLT1B LTR MaLR -234 156 1 2892 258 96 36 chr6 29089415 29091079 -153324163 + L1M4 LINE L1 3502 5264 -882 1831 87 38 8 chr6 29091079 29091343 -153323899 + MLT2A1 LTR ERVL 1 272 -172 392 145 43 14 chr6 29091776 29091845 -153323397 + MER5A DNA MER1_type 3 73 -116 252 136 0 0 chr6 29091862 29091906 -153323336 + MER74B LTR ERVL 1 44 -578 1462 236 38 28 chr6 29091966 29092364 -153322878 + MER74B LTR ERVL 211 612 -10 1977 130 56 0 chr6 29092640 29092924 -153322318 + AluSx SINE Alu 1 300 -12 695 159 0 90 chr6 29092945 29093090 -153322152 - FLAM_C SINE Alu -1 132 1 1263 243 68 19 chr6 29093097 29093521 -153321721 - L1ME3A LINE L1 -6 6164 5720 224 309 7 33 chr6 29094148 29094300 -153320942 + CT-rich Low_complexity Low_complexity 3 150 0 774 12 0 0 chr6 29094990 29095072 -153320170 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 2472 71 13 0 chr6 29095462 29095770 -153319472 + AluSx SINE Alu 1 312 0 814 238 50 0 chr6 29095797 29095999 -153319243 - L1MC4 LINE L1 -514 7528 7317 25 0 0 0 chr6 29096204 29096229 -153319013 + AT_rich Low_complexity Low_complexity 1 25 0 448 260 46 46 chr6 29096440 29096508 -153318734 + L1M4 LINE L1 4363 4430 -1716 2223 112 3 13 chr6 29096508 29096821 -153318421 + AluSg SINE Alu 1 310 0 448 260 46 46 chr6 29096821 29097056 -153318186 + L1M4 LINE L1 4429 4666 -1480 252 197 0 45 chr6 29097133 29097199 -153318043 + L1M4 LINE L1 4695 4757 -1389 31 68 0 0 chr6 29097205 29097264 -153317978 + AT_rich Low_complexity Low_complexity 1 59 0 1564 250 149 9 chr6 29097292 29097728 -153317514 + MLT2F LTR ERVL 18 514 -149 267 143 0 0 chr6 29097750 29097792 -153317450 + MLT2F LTR ERVL 622 663 0 449 246 82 27 chr6 29098058 29098241 -153317001 + L1MEc LINE L1 34 226 -6170 1700 221 97 45 chr6 29098247 29098415 -153316827 + L1MEc LINE L1 2451 2609 -3606 2198 86 10 7 chr6 29098415 29098730 -153316512 - AluSx SINE Alu 0 312 1 1700 221 97 45 chr6 29098730 29099159 -153316083 + L1MEc LINE L1 2609 3079 -3136 828 180 0 0 chr6 29099192 29099320 -153315922 + AluJ SINE Alu 2 129 -183 630 184 9 28 chr6 29099329 29099654 -153315588 + GA-rich Low_complexity Low_complexity 1 318 0 765 165 24 82 chr6 29099656 29099826 -153315416 + AluJ SINE Alu 136 295 -17 1187 255 61 53 chr6 29099831 29100417 -153314825 + L1MEc LINE L1 3117 3677 -2538 403 167 33 0 chr6 29100417 29100507 -153314735 + L1MB3 LINE L1 6087 6179 -4 1187 255 61 53 chr6 29100507 29100722 -153314520 + L1MEc LINE L1 3677 3889 -2326 186 256 128 13 chr6 29100857 29100935 -153314307 + MIR SINE MIR 121 207 -55 261 257 200 7 chr6 29101569 29101709 -153313533 - L1MC/D LINE L1 -1984 5824 5658 774 12 0 0 chr6 29102215 29102297 -153312945 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 676 0 0 0 chr6 29102920 29102992 -153312250 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 891 249 26 25 chr6 29103636 29103899 -153311343 + L1P2 LINE L1 5514 5774 -380 201 284 20 29 chr6 29104058 29104160 -153311082 + CT-rich Low_complexity Low_complexity 1 101 0 748 24 0 0 chr6 29105004 29105086 -153310156 - tRNA-Ser-TCA tRNA tRNA -3 82 1 1481 223 100 33 chr6 29106172 29106602 -153308640 + MLT1C LTR MaLR 6 464 -3 1889 113 44 20 chr6 29106698 29106991 -153308251 - AluSg SINE Alu -10 300 1 327 330 21 31 chr6 29107008 29107199 -153308043 + L1ME4a LINE L1 5640 5828 -293 297 265 132 32 chr6 29107234 29107453 -153307789 + L1ME4a LINE L1 5814 6054 -67 364 266 63 21 chr6 29107609 29107752 -153307490 + HAL1 LINE L1 1 149 -2358 376 274 6 91 chr6 29107766 29107797 -153307445 - MLT1J2 LTR MaLR -41 409 377 2111 50 0 8 chr6 29107797 29108056 -153307186 - AluSp SINE Alu -13 300 44 376 274 6 91 chr6 29108056 29108199 -153307043 - MLT1J2 LTR MaLR -73 377 250 256 341 73 8 chr6 29108188 29108311 -153306931 - MLT1I LTR MaLR -211 198 68 * 530 286 207 57 chr6 29108379 29108545 -153306697 + HAL1 LINE L1 131 271 -2236 2181 95 0 3 chr6 29108545 29108855 -153306387 + AluSg SINE Alu 1 309 0 530 286 207 57 chr6 29108855 29109471 -153305771 + HAL1 LINE L1 271 1031 -1476 456 127 0 0 chr6 29109490 29109553 -153305689 - AluJ/FRAM SINE Alu -26 286 224 215 311 184 0 chr6 29109930 29110033 -153305209 + L2 LINE L2 2215 2336 -978 23 0 0 0 chr6 29110138 29110161 -153305081 + AT_rich Low_complexity Low_complexity 1 23 0 1173 171 47 9 chr6 29110169 29110380 -153304862 + AluJb SINE Alu 87 305 -7 507 249 76 10 chr6 29110380 29110577 -153304665 + HAL1 LINE L1 1079 1288 -1219 2270 93 3 28 chr6 29110614 29110935 -153304307 - AluSp SINE Alu 0 313 1 357 45 15 30 chr6 29110997 29111063 -153304179 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 541 245 31 6 chr6 29111090 29111249 -153303993 + HAL1 LINE L1 1488 1650 -857 278 250 22 0 chr6 29111267 29111359 -153303883 - LTR33A LTR ERVL -17 506 413 588 258 60 56 chr6 29111419 29111671 -153303571 - LTR33A LTR ERVL -269 254 2 670 268 115 14 chr6 29111684 29111893 -153303349 + HAL1 LINE L1 1646 1875 -632 484 251 68 21 chr6 29112038 29112229 -153303013 + HAL1 LINE L1 2078 2277 -230 263 329 82 18 chr6 29112239 29112409 -153302833 - LTR33 LTR ERVL 0 521 341 450 307 68 5 chr6 29112498 29112690 -153302552 - LTR33 LTR ERVL -291 230 27 2013 110 37 17 chr6 29112739 29113039 -153302203 + AluSx SINE Alu 1 306 -6 625 215 157 0 chr6 29113063 29113235 -153302007 - MIR SINE MIR 0 262 64 1289 171 0 13 chr6 29113318 29113552 -153301690 + L1MB5 LINE L1 5910 6140 -34 1209 218 5 9 chr6 29113653 29113873 -153301369 + MER20 DNA MER1_type 1 219 0 261 0 0 0 chr6 29114590 29114619 -153300623 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 199 307 61 83 chr6 29115893 29116121 -153299121 + L2 LINE L2 3012 3234 -38 2895 170 70 29 chr6 29116337 29116752 -153298490 - L1MC3 LINE L1 -49 7736 7288 2074 120 0 0 chr6 29116752 29117058 -153298184 - AluSx SINE Alu 0 306 1 2895 170 70 29 chr6 29117058 29117229 -153298013 - L1MC3 LINE L1 -497 7288 7125 229 79 53 0 chr6 29117312 29117350 -153297892 - L1MD3 LINE L1 -1018 6977 6938 22 0 0 0 chr6 29117356 29117378 -153297864 + AT_rich Low_complexity Low_complexity 1 22 0 708 0 0 0 chr6 29118705 29118777 -153296465 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 304 257 71 86 chr6 29119676 29119816 -153295426 - L1ME3A LINE L1 -285 5885 5748 241 281 16 16 chr6 29120354 29120416 -153294826 - LTR67 LTR ERVL -383 174 113 787 261 25 10 chr6 29120416 29120615 -153294627 - MLT1A2 LTR MaLR 0 374 173 696 205 0 0 chr6 29120876 29120998 -153294244 + AluJb SINE Alu 2 123 -189 38 75 0 0 chr6 29121294 29121374 -153293868 + AT_rich Low_complexity Low_complexity 1 80 0 31 82 0 0 chr6 29121918 29121991 -153293251 + AT_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr6 29122126 29122149 -153293093 + AT_rich Low_complexity Low_complexity 1 23 0 1327 113 49 24 chr6 29122321 29122504 -153292738 - AluSc SINE Alu 0 309 79 291 28 0 0 chr6 29122504 29122540 -153292702 + (TG)n Simple_repeat Simple_repeat 2 37 0 1327 113 49 24 chr6 29122540 29122622 -153292620 - AluSc SINE Alu -230 79 1 217 405 0 0 chr6 29123159 29123327 -153291915 + (TGG)n Simple_repeat Simple_repeat 1 168 0 983 185 0 0 chr6 29124076 29124238 -153291004 + AluSg/x SINE Alu 137 298 -14 545 229 94 24 chr6 29124306 29124374 -153290868 - L1MDa LINE L1 -5969 571 509 450 0 0 0 chr6 29124374 29124424 -153290818 + (TG)n Simple_repeat Simple_repeat 2 51 0 545 229 94 24 chr6 29124424 29124525 -153290717 - L1MDa LINE L1 -6031 509 390 2404 55 0 29 chr6 29124680 29124992 -153290250 + AluY SINE Alu 1 303 -8 2305 81 3 0 chr6 29125028 29125355 -153289887 - AluSp SINE Alu 0 330 3 2396 72 3 3 chr6 29125380 29125686 -153289556 - AluY SINE Alu -5 306 1 2379 89 0 0 chr6 29125786 29126088 -153289154 - AluSg SINE Alu -8 302 1 252 319 29 0 chr6 29126089 29126158 -153289084 - HERV16 LTR ERVL -3434 1562 1492 508 296 44 0 chr6 29126304 29126463 -153288779 - HERV16 LTR ERVL -4830 166 1 529 319 13 22 chr6 29126463 29126695 -153288547 - LTR16B LTR ERVL 0 464 235 381 235 59 0 chr6 29126852 29126937 -153288305 - LTR16A LTR ERVL -354 96 7 29 0 0 0 chr6 29127040 29127069 -153288173 + AT_rich Low_complexity Low_complexity 1 29 0 4400 181 47 21 chr6 29127077 29127555 -153287687 - L1MA9 LINE L1 -38 6274 5810 495 0 0 0 chr6 29127555 29127610 -153287632 + (CA)n Simple_repeat Simple_repeat 2 56 0 4400 181 47 21 chr6 29127610 29128066 -153287176 - L1MA9 LINE L1 -502 5810 5316 4146 168 55 62 chr6 29128101 29128538 -153286704 - L1MA9 LINE L1 -810 5336 4898 5537 59 14 15 chr6 29128538 29129250 -153285992 - SVA Other Other 0 1386 676 4146 168 55 62 chr6 29129250 29129498 -153285744 - L1MA9 LINE L1 -1248 4898 4650 255 61 0 0 chr6 29129498 29129531 -153285711 + (TG)n Simple_repeat Simple_repeat 1 33 0 4146 168 55 62 chr6 29129531 29129884 -153285358 - L1MA9 LINE L1 -1496 4650 4304 678 281 118 30 chr6 29129909 29130578 -153284664 + L1M4 LINE L1 2732 3459 -2687 395 287 13 6 chr6 29130914 29131071 -153284171 - L1MC4a LINE L1 -1956 5852 5695 754 24 0 0 chr6 29131384 29131466 -153283776 + tRNA-Ser-TCA tRNA tRNA 1 82 -3 2040 121 0 0 chr6 29132766 29133046 -153282196 + AluSx SINE Alu 5 284 -28 216 0 0 0 chr6 29133268 29133292 -153281950 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 250 136 0 36 chr6 29133417 29133479 -153281763 + L1MA9 LINE L1 6073 6127 -41 830 153 0 0 chr6 29133485 29133603 -153281639 - FLAM_C SINE Alu -15 118 1 1033 109 69 0 chr6 29133606 29133781 -153281461 + L1MA6 LINE L1 6112 6298 -2 23 54 0 0 chr6 29133968 29134005 -153281237 + AT_rich Low_complexity Low_complexity 1 37 0 2211 84 7 0 chr6 29134234 29134519 -153280723 - AluSc SINE Alu 0 309 23 2099 99 3 7 chr6 29135857 29136140 -153279102 + AluSq SINE Alu 1 282 -31 309 26 0 0 chr6 29136140 29136178 -153279064 + (CA)n Simple_repeat Simple_repeat 1 38 0 280 395 0 18 chr6 29136186 29136300 -153278942 - L2 LINE L2 -22 3250 3139 733 130 0 26 chr6 29136945 29137060 -153278182 + FLAM_A SINE Alu 22 133 -9 2231 93 0 43 chr6 29137301 29137624 -153277618 + AluSx SINE Alu 1 309 -3 413 284 11 103 chr6 29138202 29138244 -153276998 + L1M4 LINE L1 2472 2516 -3630 2322 67 6 29 chr6 29138244 29138559 -153276683 + AluY SINE Alu 1 308 -3 413 284 11 103 chr6 29138559 29138726 -153276516 + L1M4 LINE L1 2516 2655 -3491 1742 124 73 4 chr6 29138726 29139001 -153276241 - AluJb SINE Alu -16 296 3 413 284 11 103 chr6 29139001 29139051 -153276191 + L1M4 LINE L1 2655 2708 -3438 221 0 35 0 chr6 29139053 29139082 -153276160 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1952 81 7 29 chr6 29139227 29139617 -153275625 + AluSp SINE Alu 46 429 0 23 33 0 0 chr6 29139743 29139773 -153275469 + AT_rich Low_complexity Low_complexity 1 30 0 351 0 0 0 chr6 29139911 29139950 -153275292 + (A)n Simple_repeat Simple_repeat 1 39 0 763 12 0 0 chr6 29140951 29141033 -153274209 - tRNA-Ser-TCA tRNA tRNA -3 82 1 432 298 11 11 chr6 29141342 29141520 -153273722 + L1MC4a LINE L1 5695 5872 -1936 283 314 16 16 chr6 29142799 29142920 -153272322 - L1ME4a LINE L1 -226 5895 5775 586 161 0 105 chr6 29143029 29143153 -153272089 + FLAM_C SINE Alu 2 112 -31 254 186 23 128 chr6 29143212 29143256 -153271986 - MER5A DNA MER1_type -1 188 155 2191 78 0 11 chr6 29143256 29143564 -153271678 - AluSc SINE Alu 0 307 3 254 186 23 128 chr6 29143564 29143604 -153271638 - MER5A DNA MER1_type -34 155 112 23 0 0 0 chr6 29143606 29143629 -153271613 + GC_rich Low_complexity Low_complexity 1 23 0 471 250 17 0 chr6 29143633 29143749 -153271493 - MER5A DNA MER1_type -65 124 7 788 0 0 0 chr6 29144865 29144947 -153270295 + tRNA-Ser-TCA tRNA tRNA 1 82 -3 203 183 0 146 chr6 29145240 29145322 -153269920 - MIR SINE MIR -71 191 122 210 190 86 35 chr6 29145599 29145657 -153269585 - MIR SINE MIR -110 98 38 375 23 0 0 chr6 29145869 29145913 -153269329 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 183 80 0 0 chr6 29146261 29146286 -153268956 + (A)n Simple_repeat Simple_repeat 1 25 0 1018 162 68 43 chr6 29146476 29146710 -153268532 + AluJb SINE Alu 1 240 -72 247 150 0 0 chr6 29146764 29146804 -153268438 + U2 snRNA snRNA 1 40 -148 685 14 0 0 chr6 29146928 29147000 -153268242 - tRNA-Gln-CAG tRNA tRNA -3 72 1 1454 67 0 0 chr6 29147844 29148023 -153267219 + AluY SINE Alu 133 311 0 613 299 74 44 chr6 29148351 29148364 -153266878 + L1M4 LINE L1 2476 2487 -3659 2246 61 6 96 chr6 29148364 29148707 -153266535 + AluSx SINE Alu 1 312 0 613 299 74 44 chr6 29148707 29149398 -153265844 + L1M4 LINE L1 2487 3201 -2945 956 150 75 6 chr6 29149421 29149594 -153265648 - L1MB3 LINE L1 -3 6180 5996 379 232 18 18 chr6 29149621 29149733 -153265509 + L1M4 LINE L1 4616 4727 -1419 367 309 46 21 chr6 29149866 29150060 -153265182 + L1M4 LINE L1 4931 5129 -1017 568 245 67 46 chr6 29150061 29150343 -153264899 - HAL1 LINE L1 -1165 1342 1055 262 270 12 62 chr6 29150378 29150497 -153264745 + L1MDa LINE L1 27 587 -5943 2241 192 46 94 chr6 29150540 29151469 -153263773 + L1MD2 LINE L1 4561 5424 -742 1178 219 84 81 chr6 29151470 29151626 -153263616 + L1MD2 LINE L1 5709 5863 -496 2398 71 0 0 chr6 29151626 29151923 -153263319 - AluY SINE Alu -14 297 1 1178 219 84 81 chr6 29151923 29152172 -153263070 + L1MD2 LINE L1 5863 6115 -244 740 37 0 0 chr6 29152589 29152671 -153262571 - tRNA-Ser-TCC tRNA tRNA -3 82 1 2147 110 0 30 chr6 29153909 29154210 -153261032 + AluSq SINE Alu 1 292 -21 23 0 0 0 chr6 29154213 29154236 -153261006 + AT_rich Low_complexity Low_complexity 1 23 0 2328 99 3 0 chr6 29154656 29154968 -153260274 - AluSp SINE Alu 0 313 1 2290 88 0 22 chr6 29154994 29155313 -153259929 + AluSp SINE Alu 2 313 0 1345 220 13 27 chr6 29155469 29155769 -153259473 - MER90 LTR ERV1 0 614 319 2169 104 0 13 chr6 29156004 29156312 -153258930 - AluSx SINE Alu -8 304 1 1890 87 56 31 chr6 29156502 29156790 -153258452 - AluSc SINE Alu -14 295 1 2285 98 0 3 chr6 29158731 29159037 -153256205 - AluSx SINE Alu -7 305 1 213 204 0 0 chr6 29159095 29159141 -153256101 - MIR SINE MIR -102 106 70 2325 97 0 3 chr6 29160227 29160538 -153254704 - AluSg SINE Alu 0 310 1 956 155 77 0 chr6 29160929 29161084 -153254158 - MER21B LTR ERV1 -373 490 324 243 28 0 0 chr6 29161113 29161149 -153254093 - Alu SINE Alu 0 302 267 536 34 0 159 chr6 29161360 29161448 -153253794 + tRNA-Arg-AGA tRNA tRNA 1 74 -2 229 196 0 20 chr6 29162173 29162224 -153253018 + LTR66 LTR ERVL 390 439 -171 2341 45 0 28 chr6 29162612 29162937 -153252305 + AluY SINE Alu 1 317 0 256 317 70 11 chr6 29163197 29163383 -153251859 - L1M4 LINE L1 -1273 4873 4677 23 54 0 0 chr6 29163475 29163512 -153251730 + AT_rich Low_complexity Low_complexity 1 37 0 1868 149 27 10 chr6 29163588 29163883 -153251359 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr6 29164105 29164133 -153251109 + AT_rich Low_complexity Low_complexity 1 28 0 571 168 65 0 chr6 29164228 29164335 -153250907 + MLT2B1 LTR ERVL 1 114 -406 2133 116 3 26 chr6 29166168 29166479 -153248763 + AluSx SINE Alu 2 305 -7 1961 140 4 0 chr6 29166794 29167073 -153248169 + AluSx SINE Alu 1 280 -32 24 67 0 0 chr6 29167193 29167238 -153248004 + AT_rich Low_complexity Low_complexity 1 45 0 2665 91 19 38 chr6 29167243 29167678 -153247564 + MER4A LTR ERV1 1 443 -221 4063 131 22 5 chr6 29167678 29168302 -153246940 + MER41B LTR ERV1 1 635 0 2665 91 19 38 chr6 29168302 29168338 -153246904 + MER4A LTR ERV1 443 478 -186 2341 88 0 26 chr6 29168338 29168644 -153246598 + AluSp SINE Alu 1 298 -15 2665 91 19 38 chr6 29168644 29168775 -153246467 + MER4A LTR ERV1 478 660 -4 24 0 0 0 chr6 29169040 29169064 -153246178 + AT_rich Low_complexity Low_complexity 1 24 0 1230 202 55 87 chr6 29169073 29169420 -153245822 + MER58B DNA MER1_type 1 336 -5 1964 130 4 0 chr6 29169474 29169778 -153245464 + AluSx SINE Alu 5 309 0 522 322 81 31 chr6 29169820 29170428 -153244814 + HAL1b LINE L1 187 824 -524 778 213 85 69 chr6 29170660 29170958 -153244284 + MER58 DNA MER1_type 864 1156 -1264 2035 136 0 19 chr6 29170958 29171266 -153243976 + AluSx SINE Alu 1 302 -10 778 213 85 69 chr6 29171266 29171361 -153243881 + MER58 DNA MER1_type 1156 2417 -3 2088 159 138 56 chr6 29171807 29172064 -153243178 + MLT1D LTR MaLR 1 236 -269 2281 106 0 10 chr6 29172064 29172376 -153242866 + AluSg SINE Alu 1 309 -1 2088 159 138 56 chr6 29172376 29172583 -153242659 + MLT1D LTR MaLR 236 503 -2 1038 185 110 15 chr6 29172638 29172838 -153242404 - MER20 DNA MER1_type 0 219 1 239 196 59 147 chr6 29173446 29173548 -153241694 - L2 LINE L2 0 3313 3221 1202 208 17 0 chr6 29173565 29173796 -153241446 - MER90 LTR ERV1 0 614 380 897 96 0 0 chr6 29173796 29173921 -153241321 - AluY SINE Alu -12 299 175 1265 101 5 53 chr6 29173931 29174139 -153241103 + AluY SINE Alu 114 311 0 2045 127 0 13 chr6 29174167 29174467 -153240775 - AluSx SINE Alu -16 296 1 585 97 0 0 chr6 29175244 29175316 -153239926 + tRNA-Lys-AAA tRNA tRNA 2 73 -3 2575 36 0 55 chr6 29176206 29176535 -153238707 + AluY SINE Alu 1 311 0 2259 114 0 0 chr6 29176719 29177027 -153238215 + AluSx SINE Alu 1 308 -4 275 306 0 12 chr6 29177258 29177343 -153237899 + CT-rich Low_complexity Low_complexity 2 85 0 180 0 0 0 chr6 29177678 29177698 -153237544 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 262 210 32 0 chr6 29177868 29177930 -153237312 - tRNA-Met-i tRNA tRNA -9 66 3 3963 196 25 28 chr6 29178711 29179528 -153235714 + HERVL74 LTR ERVL 1283 2096 -3589 2213 109 0 0 chr6 29179534 29179828 -153235414 + AluSq SINE Alu 1 294 -19 484 289 57 19 chr6 29180049 29180260 -153234982 + L1MC/D LINE L1 5606 5824 -1984 1367 168 0 22 chr6 29180260 29180492 -153234750 + AluJo SINE Alu 1 227 -85 253 272 72 8 chr6 29180988 29181113 -153234129 + LTR37B LTR ERV1 1 133 -335 304 217 14 29 chr6 29181166 29181306 -153233936 + LTR37A LTR ERV1 115 259 -209 703 113 0 0 chr6 29181326 29181455 -153233787 - AluSg/x SINE Alu 0 315 187 1501 51 4 146 chr6 29181456 29181709 -153233533 - AluSg SINE Alu -93 217 1 2160 78 7 24 chr6 29182209 29182502 -153232740 + AluSp SINE Alu 1 288 -25 29 0 0 0 chr6 29182502 29182531 -153232711 + AT_rich Low_complexity Low_complexity 1 29 0 606 28 0 0 chr6 29182633 29182705 -153232537 - tRNA-Asp-GAC tRNA tRNA -3 72 1 250 270 111 16 chr6 29182978 29183104 -153232138 + L2 LINE L2 2947 3084 -188 1707 227 82 2 chr6 29183408 29183835 -153231407 - MLT1C LTR MaLR -6 461 1 690 271 22 4 chr6 29184138 29184367 -153230875 + L1M4 LINE L1 4479 4711 -1435 2122 125 0 3 chr6 29184616 29184913 -153230329 + AluSq SINE Alu 1 296 -17 492 287 41 28 chr6 29185199 29185387 -153229855 - LTR33A LTR ERVL -299 222 29 481 348 49 52 chr6 29185546 29185874 -153229368 - LTR33A LTR ERVL -196 327 1 385 259 80 70 chr6 29186082 29186579 -153228663 + L1M4 LINE L1 5270 5761 -413 2252 104 3 3 chr6 29186793 29187101 -153228141 + AluSp SINE Alu 1 308 -5 2559 48 0 6 chr6 29187242 29187553 -153227689 + AluY SINE Alu 1 309 -2 678 298 146 22 chr6 29187628 29187997 -153227245 - LTR16A LTR ERVL -6 444 30 299 311 34 14 chr6 29188154 29188302 -153226940 + L1P LINE L1 4878 5028 -1118 1693 246 101 23 chr6 29188526 29189131 -153226111 + L1MC4a LINE L1 5255 5906 -1902 426 149 24 30 chr6 29189143 29189311 -153225931 + (TA)n Simple_repeat Simple_repeat 2 168 0 684 257 110 50 chr6 29189353 29189411 -153225831 + L1MC4a LINE L1 5902 5955 -1853 1974 94 4 0 chr6 29189411 29189665 -153225577 + AluSg SINE Alu 3 257 -53 270 81 0 0 chr6 29189670 29189707 -153225535 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 684 257 110 50 chr6 29189707 29189927 -153225315 + L1MC4a LINE L1 5958 6223 -1585 2206 126 7 0 chr6 29189927 29190237 -153225005 + AluSq SINE Alu 1 312 -1 684 257 110 50 chr6 29190237 29190387 -153224855 + L1MC4a LINE L1 6223 6363 -1445 651 27 0 0 chr6 29190990 29191063 -153224179 - tRNA-Lys-AAA tRNA tRNA -3 73 1 651 0 0 0 chr6 29191997 29192069 -153223173 - tRNA-Met-i tRNA tRNA -3 72 1 288 130 0 0 chr6 29192355 29192401 -153222841 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 704 280 63 109 chr6 29192881 29193402 -153221840 + MER45C DNA AcHobo 3 499 -454 513 216 0 0 chr6 29193410 29193512 -153221730 + MER45C DNA AcHobo 852 953 0 2251 95 3 25 chr6 29193607 29193922 -153221320 + AluSg SINE Alu 1 308 -2 1901 164 50 70 chr6 29194165 29194640 -153220602 + MER31B LTR ERV1 1 466 0 22 56 0 0 chr6 29194659 29194695 -153220547 + AT_rich Low_complexity Low_complexity 1 36 0 2280 116 0 0 chr6 29194740 29195051 -153220191 - AluSq SINE Alu 0 313 3 2236 110 0 16 chr6 29195095 29195412 -153219830 - AluSx SINE Alu 0 312 1 754 113 9 0 chr6 29195588 29195694 -153219548 + U6 snRNA snRNA 1 107 0 323 176 35 120 chr6 29195737 29195792 -153219450 - MER5B DNA MER1_type 0 178 120 1810 159 8 34 chr6 29195792 29195897 -153219345 + MER2 DNA MER2_type 2 108 -236 3479 191 52 64 chr6 29195897 29196878 -153218364 - LTR5 LTR ERVK 0 969 1 1810 159 8 34 chr6 29196878 29197124 -153218118 + MER2 DNA MER2_type 108 344 0 323 176 35 120 chr6 29197124 29197210 -153218032 - MER5B DNA MER1_type -58 120 49 251 253 118 39 chr6 29197942 29198120 -153217122 + LTR37B LTR ERV1 7 198 -270 381 226 65 8 chr6 29198210 29198334 -153216908 + LTR37A LTR ERV1 276 406 -20 2292 86 3 26 chr6 29198655 29198968 -153216274 - AluSx SINE Alu -6 306 1 1325 129 129 16 chr6 29199162 29199417 -153215825 + AluSg SINE Alu 1 284 -26 1433 214 35 86 chr6 29199558 29199856 -153215386 + LTR43 LTR ERV1 96 359 -243 1922 100 0 0 chr6 29199856 29200107 -153215135 + AluSg SINE Alu 1 251 -59 1433 214 35 86 chr6 29200107 29200321 -153214921 + LTR43 LTR ERV1 359 582 -20 315 0 0 0 chr6 29200628 29200663 -153214579 + (A)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chr6 29200663 29200691 -153214551 + (TA)n Simple_repeat Simple_repeat 2 29 0 941 145 179 43 chr6 29201141 29201376 -153213866 - AluJo SINE Alu -7 305 39 2232 126 0 19 chr6 29201393 29201711 -153213531 - AluSx SINE Alu 0 312 1 554 9 0 222 chr6 29201744 29201852 -153213390 - tRNA-Leu-TTG tRNA tRNA -2 84 1 22 35 0 0 chr6 29202354 29202383 -153212859 + AT_rich Low_complexity Low_complexity 1 29 0 2192 93 0 10 chr6 29202680 29202970 -153212272 - AluSx SINE Alu -25 287 1 204 40 0 0 chr6 29202970 29202995 -153212247 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2099 111 4 0 chr6 29202995 29203275 -153211967 - AluSx SINE Alu -29 283 3 2425 76 3 0 chr6 29203342 29203643 -153211599 + AluY SINE Alu 1 302 -9 289 275 53 23 chr6 29203760 29203891 -153211351 - L1MC/D LINE L1 -2056 5752 5618 206 250 0 0 chr6 29204452 29204504 -153210738 + T-rich Low_complexity Low_complexity 1 52 0 551 9 0 229 chr6 29204813 29204922 -153210320 - tRNA-Leu-TTG tRNA tRNA -2 84 1 2379 65 0 7 chr6 29205624 29205918 -153209324 - AluSx SINE Alu -20 292 1 255 125 0 0 chr6 29205999 29206039 -153209203 + (A)n Simple_repeat Simple_repeat 1 40 0 2008 88 46 0 chr6 29206171 29206433 -153208809 - AluSg SINE Alu -36 274 1 2378 82 0 10 chr6 29206728 29207033 -153208209 + AluSq SINE Alu 1 302 -11 1479 261 91 63 chr6 29207302 29207689 -153207553 + MLT1G1 LTR MaLR 1 411 -184 1802 173 3 7 chr6 29207689 29207978 -153207264 - AluJb SINE Alu -24 288 1 1479 261 91 63 chr6 29207978 29208160 -153207082 + MLT1G1 LTR MaLR 411 586 -9 299 139 14 0 chr6 29208164 29208220 -153207022 - LTR41 LTR ERVL 0 795 723 953 241 105 30 chr6 29208230 29208758 -153206484 - LTR41 LTR ERVL -157 616 15 2307 98 3 25 chr6 29209051 29209367 -153205875 + AluSq SINE Alu 1 309 -4 872 44 0 9 chr6 29209443 29209557 -153205685 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 2410 89 0 10 chr6 29209557 29209870 -153205372 + AluY SINE Alu 1 310 -1 599 257 0 0 chr6 29209879 29210019 -153205223 + MLT1-int LTR MaLR 397 536 -835 999 168 0 0 chr6 29210808 29210997 -153204245 - AluSg/x SINE Alu 0 320 132 1835 116 94 4 chr6 29210998 29211273 -153203969 - AluSq SINE Alu -8 305 6 246 263 18 0 chr6 29211679 29211736 -153203506 + MER5C DNA MER1_type 5 62 -262 2258 106 0 0 chr6 29211971 29212264 -153202978 - AluSc SINE Alu -16 293 1 24 53 0 0 chr6 29212302 29212340 -153202902 + AT_rich Low_complexity Low_complexity 1 38 0 2278 109 3 0 chr6 29212719 29213021 -153202221 + AluSx SINE Alu 1 303 -9 688 285 221 44 chr6 29213103 29213483 -153201759 + LTR33 LTR ERVL 6 470 -51 2622 49 0 3 chr6 29213577 29213883 -153201359 + AluY SINE Alu 1 305 -6 2110 112 11 11 chr6 29214056 29214215 -153201027 - AluSq SINE Alu -18 295 134 2480 56 16 10 chr6 29214215 29214521 -153200721 - AluSc SINE Alu -1 308 1 2110 112 11 11 chr6 29214521 29214648 -153200594 - AluSq SINE Alu -178 135 9 376 234 95 36 chr6 29214950 29215087 -153200155 - L1ME4a LINE L1 -194 5927 5783 201 181 14 28 chr6 29215226 29215298 -153199944 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chr6 29216791 29216823 -153198419 + AT_rich Low_complexity Low_complexity 1 32 0 404 176 0 14 chr6 29217532 29217606 -153197636 + tRNA-Thr-ACA tRNA tRNA 1 73 -3 2010 120 0 13 chr6 29217656 29217957 -153197285 - AluSx SINE Alu -15 297 1 509 126 92 0 chr6 29218088 29218175 -153197067 + L1M3f LINE L1 7 101 -5227 253 308 13 0 chr6 29218319 29218397 -153196845 + MLT1K LTR MaLR 507 585 -3 270 309 64 0 chr6 29218458 29218568 -153196674 + L2 LINE L2 3151 3267 -5 588 213 177 6 chr6 29218577 29218741 -153196501 + AluJo SINE Alu 120 311 -1 2044 115 0 0 chr6 29219475 29219754 -153195488 - AluSq SINE Alu -12 301 23 790 189 40 0 chr6 29219777 29219925 -153195317 + LTR8A LTR ERV1 1 154 -573 838 239 6 17 chr6 29219927 29220107 -153195135 + LTR8 LTR ERV1 514 691 0 1742 174 3 0 chr6 29220198 29220509 -153194733 - AluSx SINE Alu 0 312 1 872 246 57 93 chr6 29220886 29221444 -153193798 - MER34 LTR ERV1 -4 538 1 1852 159 7 3 chr6 29221450 29221745 -153193497 - AluJo SINE Alu -10 302 7 240 369 87 0 chr6 29221768 29221865 -153193377 + LTR67 LTR ERVL 107 213 -339 1946 116 58 10 chr6 29221865 29222159 -153193083 + AluSx SINE Alu 1 308 -4 215 122 0 24 chr6 29222169 29222210 -153193032 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 487 284 93 6 chr6 29222312 29222474 -153192768 + LTR67 LTR ERVL 348 523 -34 3203 144 89 76 chr6 29222571 29223127 -153192115 - MER50 LTR ERV1 -29 705 136 2347 60 0 14 chr6 29223127 29223446 -153191796 - AluY SINE Alu 0 315 1 3203 144 89 76 chr6 29223446 29223584 -153191658 - MER50 LTR ERV1 -598 136 1 2436 198 42 12 chr6 29223708 29224166 -153191076 + MLT2B2 LTR ERVL 1 477 -38 237 65 0 0 chr6 29224166 29224197 -153191045 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 2436 198 42 12 chr6 29224197 29224237 -153191005 + MLT2B2 LTR ERVL 477 514 -1 4681 79 4 69 chr6 29224628 29225336 -153189906 - MER4A LTR ERV1 0 664 3 2214 128 0 3 chr6 29225353 29225666 -153189576 - AluSq SINE Alu -1 312 1 1420 158 87 34 chr6 29225667 29225965 -153189277 - LTR48 LTR ERV1 -473 314 1 2502 74 0 0 chr6 29226042 29226340 -153188902 + AluSg SINE Alu 1 298 -12 2121 124 30 0 chr6 29226460 29226759 -153188483 + AluSx SINE Alu 1 308 -4 31 0 0 0 chr6 29226980 29227011 -153188231 + AT_rich Low_complexity Low_complexity 1 31 0 1541 159 24 54 chr6 29227238 29227534 -153187708 - AluJb SINE Alu -24 288 2 2388 76 3 0 chr6 29227583 29227872 -153187370 - AluSp SINE Alu -13 300 11 478 285 32 72 chr6 29227939 29228160 -153187082 - LTR33 LTR ERVL -2 519 308 356 296 57 68 chr6 29228194 29228287 -153186955 - LTR33 LTR ERVL -301 220 128 2226 112 10 0 chr6 29228287 29228583 -153186659 + AluSg SINE Alu 1 299 -11 356 296 57 68 chr6 29228583 29228665 -153186577 - LTR33 LTR ERVL -393 128 47 1567 210 25 27 chr6 29228959 29229325 -153185917 - MLT1A1 LTR MaLR 0 365 1 1194 164 36 84 chr6 29231481 29231755 -153183487 - MLT2B2 LTR ERVL 0 515 255 3952 148 19 0 chr6 29231757 29232339 -153182903 - ERVL-A2 LTR ERVL -3384 2380 1788 3430 70 14 0 chr6 29232339 29232767 -153182475 + LTR3b LTR ERVK 1 434 -3 612 96 85 0 chr6 29232778 29232872 -153182370 - ERVL-A2 LTR ERVL -3970 1794 1693 916 201 1 0 chr6 29233034 29233210 -153182032 - ERVL-A2 LTR ERVL -3979 1693 1498 * 17969 64 14 19 chr6 29233208 29235490 -153179752 - ERVL-A2 LTR ERVL -3382 2272 1 299 29 0 0 chr6 29235490 29235524 -153179718 - MLT2A2 LTR ERVL 0 453 420 1990 116 55 27 chr6 29235869 29236197 -153179045 + MER1B DNA MER1_type 1 337 0 21 0 0 31 chr6 29236241 29236255 -153178987 + AT_rich Low_complexity Low_complexity 1 14 -17 2505 84 0 3 chr6 29236255 29236566 -153178676 - AluY SINE Alu -1 310 1 21 0 0 31 chr6 29236566 29236583 -153178659 + AT_rich Low_complexity Low_complexity 14 31 0 1667 150 64 4 chr6 29236856 29237123 -153178119 + AluJo SINE Alu 11 293 -19 1501 171 18 145 chr6 29237229 29237444 -153177798 - LTR26E LTR ERV1 0 622 381 2170 126 0 22 chr6 29237444 29237762 -153177480 + AluSx SINE Alu 1 311 -1 1501 171 18 145 chr6 29237762 29237805 -153177437 - LTR26E LTR ERV1 -241 381 334 2152 117 0 35 chr6 29237805 29238122 -153177120 - AluSx SINE Alu -6 306 1 1501 171 18 145 chr6 29238122 29238155 -153177087 - LTR26E LTR ERV1 -288 334 389 747 180 0 0 chr6 29238155 29238277 -153176965 - FLAM_C SINE Alu -11 122 1 1501 171 18 145 chr6 29238277 29238376 -153176866 - LTR26E LTR ERV1 -232 390 280 2159 107 0 38 chr6 29238392 29238711 -153176531 + AluSc SINE Alu 3 309 0 2432 59 14 0 chr6 29239161 29239449 -153175793 - AluY SINE Alu -19 292 1 203 245 0 71 chr6 29239504 29239602 -153175640 + T-rich Low_complexity Low_complexity 5 95 0 661 233 0 0 chr6 29239970 29240099 -153175143 - FLAM_A SINE Alu -3 130 2 4388 186 56 53 chr6 29240249 29241168 -153174074 + L1MB1 LINE L1 4162 5077 -1091 1755 119 93 0 chr6 29241168 29241436 -153173806 - AluSp SINE Alu 0 313 21 4388 186 56 53 chr6 29241436 29241600 -153173642 + L1MB1 LINE L1 5077 5239 -929 2277 94 3 0 chr6 29241600 29241888 -153173354 + AluSp SINE Alu 1 289 -24 4388 186 56 53 chr6 29241888 29242196 -153173046 + L1MB1 LINE L1 5239 5545 -623 2143 136 3 0 chr6 29242196 29242505 -153172737 + AluSx SINE Alu 1 310 -2 4388 186 56 53 chr6 29242505 29242733 -153172509 + L1MB1 LINE L1 5545 5771 -397 1336 178 159 0 chr6 29242733 29242991 -153172251 + AluJo SINE Alu 1 299 -3 4388 186 56 53 chr6 29242991 29243261 -153171981 + L1MB1 LINE L1 5771 6113 -55 2324 78 3 7 chr6 29243261 29243556 -153171686 + AluSp SINE Alu 1 294 -19 4388 186 56 53 chr6 29243556 29243609 -153171633 + L1MB1 LINE L1 6113 6164 -4 361 211 16 11 chr6 29244418 29244517 -153170725 - L1M LINE L1 -764 5407 5312 270 253 90 18 chr6 29244500 29244666 -153170576 + L1ME3A LINE L1 5000 5177 -969 * 1009 147 0 0 chr6 29244672 29244815 -153170427 - AluSg/x SINE Alu -25 287 145 1862 151 0 31 chr6 29244986 29245305 -153169937 + AluJb SINE Alu 2 310 -2 345 208 28 14 chr6 29245623 29245695 -153169547 - tRNA-Val-GTG tRNA tRNA -3 73 1 2220 92 0 72 chr6 29245958 29246293 -153168949 - AluSx SINE Alu -1 311 1 3102 138 53 96 chr6 29246366 29246896 -153168346 + LTR8 LTR ERV1 1 493 -198 2151 114 0 16 chr6 29246896 29247204 -153168038 - AluSq SINE Alu -9 304 2 3102 138 53 96 chr6 29247204 29247395 -153167847 + LTR8 LTR ERV1 493 691 0 1149 159 52 30 chr6 29247648 29247756 -153167486 - Tigger7 DNA MER2_type 0 2491 2387 4769 95 4 38 chr6 29247756 29248027 -153167215 + MER4A LTR ERV1 1 280 -384 2426 97 0 10 chr6 29248027 29248337 -153166905 + AluSx SINE Alu 1 307 -5 4769 95 4 38 chr6 29248337 29248752 -153166490 + MER4A LTR ERV1 280 664 0 1149 159 52 30 chr6 29248752 29248875 -153166367 - Tigger7 DNA MER2_type -104 2387 2255 2079 118 10 14 chr6 29249080 29249377 -153165865 - AluSx SINE Alu -16 296 1 28 29 0 0 chr6 29249502 29249537 -153165705 + AT_rich Low_complexity Low_complexity 1 35 0 603 68 0 0 chr6 29250104 29250177 -153165065 - tRNA-Val-GTT tRNA tRNA -3 73 1 693 279 112 18 chr6 29250345 29250685 -153164557 + L1ME3A LINE L1 5643 6014 -156 243 0 0 0 chr6 29250735 29250762 -153164480 + (TG)n Simple_repeat Simple_repeat 1 27 0 354 173 0 0 chr6 29250785 29250860 -153164382 + GA-rich Low_complexity Low_complexity 1 75 0 252 222 0 63 chr6 29250889 29250952 -153164290 - MLT2D LTR ERVL -65 349 291 2745 209 33 18 chr6 29251050 29251772 -153163470 + L1MB3 LINE L1 3220 3952 -2194 9975 53 7 106 chr6 29252052 29253585 -153161657 + SVA Other Other 5 1386 0 2903 175 21 62 chr6 29253602 29254073 -153161169 + L1MB3 LINE L1 4692 5181 -999 2190 109 0 3 chr6 29254073 29254398 -153160844 + AluSx SINE Alu 1 312 0 2903 175 21 62 chr6 29254398 29254957 -153160285 + L1MB3 LINE L1 5181 5666 -514 2492 57 0 31 chr6 29254957 29255275 -153159967 + AluY SINE Alu 1 308 -3 2903 175 21 62 chr6 29255275 29255341 -153159901 + L1MB3 LINE L1 5666 5733 -447 598 221 7 14 chr6 29255342 29255482 -153159760 + AluJo SINE Alu 2 140 -172 228 154 26 0 chr6 29255482 29255521 -153159721 + Alu SINE Alu 241 280 -22 1873 186 77 12 chr6 29255537 29255968 -153159274 + L1MB3 LINE L1 5725 6183 0 1853 144 0 72 chr6 29256100 29256434 -153158808 - AluSx SINE Alu -2 310 1 282 334 46 30 chr6 29256562 29256867 -153158375 + L1MA7 LINE L1 5617 5926 -365 * 1838 203 155 58 chr6 29256609 29256908 -153158334 + L1MD2 LINE L1 5660 5928 -431 1983 120 27 20 chr6 29256908 29257209 -153158033 + AluSx SINE Alu 1 303 -9 1838 203 155 58 chr6 29257209 29257438 -153157804 + L1MD2 LINE L1 5928 6133 -226 2186 111 3 0 chr6 29257438 29257736 -153157506 + AluSx SINE Alu 12 310 -2 1838 203 155 58 chr6 29257736 29257832 -153157410 + L1MD2 LINE L1 6133 6346 -13 2666 48 0 3 chr6 29257879 29258189 -153157053 + AluY SINE Alu 1 309 -2 4780 153 65 14 chr6 29258263 29258577 -153156665 + L1MC1 LINE L1 138 435 -5991 2372 93 0 6 chr6 29258577 29258890 -153156352 - AluSx SINE Alu -1 311 1 4780 153 65 14 chr6 29258890 29259470 -153155772 + L1MC1 LINE L1 435 1077 -5349 3634 156 8 3 chr6 29259438 29260131 -153155111 + L1MC1 LINE L1 5453 6146 -467 * 2284 84 17 0 chr6 29260131 29260450 -153154792 - AluSq SINE Alu 0 313 1 2036 113 51 0 chr6 29260464 29260756 -153154486 - AluSg SINE Alu -3 307 1 631 186 22 82 chr6 29260757 29260940 -153154302 + L1MC2 LINE L1 6160 6331 -13 1533 164 63 35 chr6 29260955 29261280 -153153962 + AluJo SINE Alu 1 333 0 234 91 0 0 chr6 29261320 29261353 -153153889 + (A)n Simple_repeat Simple_repeat 1 33 0 2196 114 3 0 chr6 29261356 29261655 -153153587 + AluSx SINE Alu 1 300 -12 474 213 52 29 chr6 29262205 29262341 -153152901 - MER92C LTR ERV1 -2 552 414 241 146 18 18 chr6 29262343 29262398 -153152844 + L1MC1 LINE L1 6241 6295 -318 529 167 0 12 chr6 29262462 29262546 -153152696 + MER68 LTR ERV1 480 562 0 494 161 34 85 chr6 29262546 29262664 -153152578 - MER92C LTR ERV1 -243 311 200 2432 45 3 32 chr6 29262664 29262975 -153152267 + AluY SINE Alu 3 304 -7 2294 74 9 49 chr6 29263334 29263660 -153151582 + AluSp SINE Alu 1 313 0 360 43 0 0 chr6 29263875 29263921 -153151321 + (A)n Simple_repeat Simple_repeat 1 46 0 515 105 0 40 chr6 29263942 29264018 -153151224 + tRNA-Phe-TTC tRNA tRNA 1 73 -3 737 118 0 0 chr6 29264321 29264431 -153150811 - AluSg/x SINE Alu -9 301 192 1057 84 0 0 chr6 29264431 29264562 -153150680 - AluSc SINE Alu -178 131 1 2126 95 0 26 chr6 29264614 29264918 -153150324 - AluSq SINE Alu -17 296 1 261 0 0 0 chr6 29265170 29265199 -153150043 + (CA)n Simple_repeat Simple_repeat 2 30 0 436 226 7 95 chr6 29265238 29265375 -153149867 + FLAM_A SINE Alu 1 125 -17 2282 74 13 7 chr6 29265482 29265781 -153149461 + AluSx SINE Alu 10 310 -2 310 172 0 17 chr6 29267395 29267453 -153147789 + MER66A LTR ERV1 284 340 -138 633 27 0 0 chr6 29267759 29267834 -153147408 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 1977 115 30 20 chr6 29268018 29268323 -153146919 + AluSp SINE Alu 1 308 -5 273 57 0 0 chr6 29269123 29269158 -153146084 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 652 27 0 0 chr6 29269740 29269814 -153145428 - tRNA-Arg-CGC tRNA tRNA -2 74 1 2400 88 3 0 chr6 29270175 29270483 -153144759 - AluSp SINE Alu -4 309 1 2170 95 7 7 chr6 29271180 29271474 -153143768 - AluSx SINE Alu -18 294 1 494 143 0 0 chr6 29271624 29271701 -153143541 - tRNA-Ser-TCA tRNA tRNA -1 84 8 994 236 185 38 chr6 29271972 29272266 -153142976 + L2 LINE L2 968 1218 -2096 2053 92 7 33 chr6 29272266 29272570 -153142672 + AluSx SINE Alu 1 296 -16 994 236 185 38 chr6 29272570 29272719 -153142523 + L2 LINE L2 1218 1476 -1838 405 243 140 0 chr6 29272745 29272881 -153142361 + L2 LINE L2 1884 2038 -1276 3553 177 30 8 chr6 29272882 29273667 -153141575 - L1MC1 LINE L1 -445 5888 5081 825 220 38 0 chr6 29273667 29273826 -153141416 + AluJb SINE Alu 134 298 -14 2340 80 0 10 chr6 29274311 29274611 -153140631 - AluSg SINE Alu -13 297 1 938 208 35 75 chr6 29274851 29275198 -153140044 - L1MC1 LINE L1 -1052 5094 4762 196 292 28 0 chr6 29275199 29275271 -153139971 + L2 LINE L2 2066 2139 -1175 2165 123 7 0 chr6 29275271 29275572 -153139670 - AluSx SINE Alu -9 303 1 445 276 104 31 chr6 29275572 29275735 -153139507 + L2 LINE L2 3130 3304 -9 248 325 81 16 chr6 29275762 29275885 -153139357 - MIR3 SINE MIR -63 145 15 2140 115 23 13 chr6 29276041 29276346 -153138896 - AluSx SINE Alu -3 309 2 2225 110 0 3 chr6 29276706 29276997 -153138245 - AluSg SINE Alu -20 290 1 234 262 95 0 chr6 29277008 29277092 -153138150 + LTR66 LTR ERVL 26 117 -493 227 335 71 12 chr6 29277336 29277506 -153137736 + MIR SINE MIR 6 185 -77 277 271 47 12 chr6 29277534 29277619 -153137623 - L2 LINE L2 -51 3221 3134 2118 117 0 0 chr6 29278023 29278314 -153136928 - AluSq SINE Alu -22 291 1 859 76 144 0 chr6 29278314 29278432 -153136810 - AluSq/x SINE Alu -178 135 1 1736 122 41 44 chr6 29278499 29278794 -153136448 + AluSq SINE Alu 1 294 -19 365 87 0 0 chr6 29279803 29279849 -153135393 + tRNA-Val-GTT tRNA tRNA 1 46 -30 639 27 0 0 chr6 29280282 29280355 -153134887 - tRNA-Val-GTT tRNA tRNA -3 73 1 2324 85 0 16 chr6 29280614 29280932 -153134310 + AluSp SINE Alu 1 313 0 180 333 0 0 chr6 29280946 29281006 -153134236 - L2 LINE L2 -219 3053 2994 192 40 0 0 chr6 29281025 29281050 -153134192 + (T)n Simple_repeat Simple_repeat 1 25 0 610 103 0 0 chr6 29281495 29281582 -153133660 + AluSq/x SINE Alu 37 123 -189 393 187 0 13 chr6 29281886 29281961 -153133281 + tRNA-Val-GTG tRNA tRNA 2 75 -1 2217 106 7 0 chr6 29282067 29282370 -153132872 + AluSx SINE Alu 2 306 -6 393 22 0 0 chr6 29282470 29282516 -153132726 + (CA)n Simple_repeat Simple_repeat 1 46 0 2144 65 65 4 chr6 29282925 29283201 -153132041 + AluSp SINE Alu 1 293 -20 2044 119 7 0 chr6 29283272 29283574 -153131668 - AluSx SINE Alu -8 304 1 679 0 0 0 chr6 29283871 29283945 -153131297 - tRNA-Thr-ACT tRNA tRNA -3 74 1 2379 79 3 19 chr6 29284150 29284468 -153130774 + AluSq SINE Alu 1 313 0 310 28 0 0 chr6 29284740 29284776 -153130466 + U2 snRNA snRNA 1 36 -152 987 282 41 40 chr6 29284810 29285211 -153130031 + LTR16A LTR ERVL 51 457 0 2130 97 19 13 chr6 29285414 29285724 -153129518 + AluSx SINE Alu 1 312 0 2598 58 0 0 chr6 29285727 29286036 -153129206 + AluY SINE Alu 1 309 -2 648 14 0 0 chr6 29287364 29287438 -153127804 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 25 65 0 0 chr6 29287978 29288024 -153127218 + AT_rich Low_complexity Low_complexity 1 46 0 256 256 88 44 chr6 29288064 29288103 -153127139 - L1MC4a LINE L1 -1692 6116 6080 2399 99 0 0 chr6 29288103 29288415 -153126827 - AluSx SINE Alu 0 312 1 256 256 88 44 chr6 29288415 29288625 -153126617 - L1MC4a LINE L1 -1728 6080 5856 1951 90 4 4 chr6 29288675 29288931 -153126311 + AluSc SINE Alu 38 293 -16 279 133 0 0 chr6 29289298 29289343 -153125899 + (TG)n Simple_repeat Simple_repeat 2 46 0 404 159 29 0 chr6 29289370 29289439 -153125803 - AluSg/x SINE Alu -13 287 217 1992 119 173 31 chr6 29289451 29289621 -153125621 + LTR47A LTR ERVL 11 155 -297 1914 142 27 0 chr6 29289621 29289916 -153125326 + AluSx SINE Alu 1 303 -9 1992 119 173 31 chr6 29289916 29290132 -153125110 + LTR47A LTR ERVL 155 452 0 699 282 136 22 chr6 29290209 29290578 -153124664 + HAL1 LINE L1 1496 1906 -601 21 0 0 0 chr6 29291033 29291054 -153124188 + AT_rich Low_complexity Low_complexity 1 21 0 2164 129 0 0 chr6 29291397 29291706 -153123536 - AluSx SINE Alu 0 312 4 2305 68 7 36 chr6 29291954 29292261 -153122981 + AluSg SINE Alu 3 300 -10 2416 87 0 3 chr6 29292346 29292655 -153122587 - AluSp SINE Alu -5 308 1 2368 84 3 3 chr6 29292664 29292972 -153122270 - AluSg SINE Alu -2 308 1 228 193 34 68 chr6 29292972 29293060 -153122182 + L1MC5 LINE L1 7829 7913 -48 200 314 0 0 chr6 29293967 29294018 -153121224 + MER5B DNA MER1_type 128 178 0 1745 134 42 0 chr6 29294391 29294652 -153120590 - AluSx SINE Alu -24 288 17 409 304 48 39 chr6 29294722 29294952 -153120290 - MIR SINE MIR -10 252 21 2374 98 0 7 chr6 29294956 29295263 -153119979 - AluSx SINE Alu -7 305 1 2339 90 0 7 chr6 29296027 29296328 -153118914 + AluSg SINE Alu 9 307 -3 2364 47 3 72 chr6 29296349 29296669 -153118573 + AluY SINE Alu 2 299 -12 2186 117 0 0 chr6 29296813 29297111 -153118131 - AluSx SINE Alu -14 298 1 403 217 94 71 chr6 29297152 29297364 -153117878 - L1MC4a LINE L1 -1925 5883 5667 217 217 0 28 chr6 29297366 29297472 -153117770 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 1502 181 20 40 chr6 29297618 29297760 -153117482 + AluJb SINE Alu 1 144 -168 2404 77 0 3 chr6 29297760 29298059 -153117183 + AluSg SINE Alu 1 298 -12 1502 181 20 40 chr6 29298059 29298215 -153117027 + AluJb SINE Alu 144 293 -19 1059 187 14 10 chr6 29298298 29298507 -153116735 + AluJo SINE Alu 85 294 -18 1676 108 0 0 chr6 29299107 29299321 -153115921 - AluSg/x SINE Alu -16 294 81 1367 166 58 75 chr6 29299404 29299712 -153115530 + AluJo SINE Alu 1 303 -9 4787 150 30 37 chr6 29299819 29299859 -153115383 - L1MB3 LINE L1 -7 6176 6137 186 71 0 0 chr6 29299859 29299887 -153115355 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1952 87 60 11 chr6 29299887 29300152 -153115090 - AluSc SINE Alu -31 278 1 4787 150 30 37 chr6 29300152 29300634 -153114608 - L1MB3 LINE L1 -45 6138 5660 2682 46 3 0 chr6 29300634 29300939 -153114303 - AluY SINE Alu -5 306 1 4787 150 30 37 chr6 29300939 29301323 -153113919 - L1MB3 LINE L1 -523 5660 5275 472 147 147 116 chr6 29301655 29301739 -153113503 + MER3 DNA MER1_type 1 92 -70 2009 139 3 10 chr6 29301739 29302040 -153113202 + AluJb SINE Alu 1 299 -13 472 147 147 116 chr6 29302040 29302084 -153113158 + MER3 DNA MER1_type 92 133 -76 227 380 62 8 chr6 29302126 29302255 -153112987 - L2 LINE L2 -573 2741 2606 359 223 172 87 chr6 29302317 29302649 -153112593 - MLT1J LTR MaLR -4 507 148 1726 157 143 51 chr6 29302831 29303259 -153111983 - MLT1C LTR MaLR 0 467 1 1974 139 0 37 chr6 29303774 29304097 -153111145 - AluJb SINE Alu -1 311 1 1674 181 0 0 chr6 29304733 29305009 -153110233 + AluJo SINE Alu 37 312 0 2598 47 0 0 chr6 29305056 29305355 -153109887 + AluY SINE Alu 1 299 -12 393 259 136 32 chr6 29305943 29306194 -153109048 + MLT1J LTR MaLR 232 508 -3 508 220 63 73 chr6 29306195 29306299 -153108943 - MIR SINE MIR -1 261 158 1100 169 16 6 chr6 29306299 29306482 -153108760 + MER5A DNA MER1_type 5 189 0 508 220 63 73 chr6 29306482 29306568 -153108674 - MIR SINE MIR -104 158 73 1270 160 82 25 chr6 29306611 29306883 -153108359 - Charlie2 DNA MER1_type 0 2862 2568 2252 136 0 0 chr6 29306883 29307192 -153108050 - AluSx SINE Alu -3 309 1 1270 160 82 25 chr6 29307192 29307237 -153108005 - Charlie2 DNA MER1_type -294 2568 2527 2235 89 7 10 chr6 29307256 29307547 -153107695 - AluSc SINE Alu -19 290 1 240 185 0 0 chr6 29307592 29307646 -153107596 + CT-rich Low_complexity Low_complexity 4 57 0 1800 166 7 23 chr6 29307659 29307967 -153107275 - AluSx SINE Alu -6 306 4 826 227 92 12 chr6 29307968 29308219 -153107023 - Charlie2 DNA MER1_type -628 2234 1964 231 328 49 0 chr6 29308279 29308401 -153106841 + MER112 DNA MER1_type 6 133 -127 3422 98 40 23 chr6 29308449 29308747 -153106495 - Tigger3(Golem) DNA MER2_type -1 3027 2715 2126 122 7 3 chr6 29308747 29309042 -153106200 + AluSq SINE Alu 1 296 -17 3422 98 40 23 chr6 29309042 29309261 -153105981 - Tigger3(Golem) DNA MER2_type -313 2715 2501 1091 117 0 0 chr6 29309261 29309442 -153105800 - AluSg/x SINE Alu 0 318 138 188 283 0 0 chr6 29309659 29309705 -153105537 + L2 LINE L2 3266 3311 -2 2685 52 0 0 chr6 29310885 29311193 -153104049 + AluY SINE Alu 1 308 -3 225 0 0 0 chr6 29311325 29311350 -153103892 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1862 135 7 11 chr6 29311350 29311631 -153103611 - AluSx SINE Alu -32 280 1 942 225 0 6 chr6 29311881 29312054 -153103188 - MER45A DNA AcHobo -3 175 4 1266 118 10 35 chr6 29312680 29312883 -153102359 + AluSg/x SINE Alu 113 310 0 1720 148 46 30 chr6 29312898 29313201 -153102041 + AluSx SINE Alu 1 308 -4 200 219 0 0 chr6 29313317 29313358 -153101884 - MIR SINE MIR -6 256 216 210 267 0 17 chr6 29313455 29313515 -153101727 - MIR SINE MIR -184 78 20 262 287 37 28 chr6 29313971 29314079 -153101163 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 1967 128 3 49 chr6 29314100 29314406 -153100836 + AluSx SINE Alu 1 292 -20 1700 191 17 7 chr6 29314971 29315270 -153099972 + AluJb SINE Alu 11 312 0 488 176 19 19 chr6 29315506 29315614 -153099628 + MLT2D LTR ERVL 1 108 -306 1911 159 0 7 chr6 29315638 29315927 -153099315 - AluJb SINE Alu -25 287 1 21 0 0 0 chr6 29315936 29315957 -153099285 + AT_rich Low_complexity Low_complexity 1 21 0 2333 103 3 0 chr6 29315957 29316258 -153098984 - AluSq SINE Alu -11 302 1 1735 171 20 3 chr6 29316263 29316556 -153098686 - AluJb SINE Alu -14 298 1 753 195 23 0 chr6 29316584 29316712 -153098530 + FLAM_C SINE Alu 2 132 -11 858 224 112 42 chr6 29316726 29317012 -153098230 + MLT2B1 LTR ERVL 123 428 -92 2294 85 3 10 chr6 29317072 29317365 -153097877 + AluSp SINE Alu 1 291 -22 669 102 0 0 chr6 29317669 29317757 -153097485 - AluSp/q SINE Alu -12 301 214 500 98 120 0 chr6 29317754 29317875 -153097367 + AluSg/x SINE Alu 182 313 0 * 282 242 16 0 chr6 29318064 29318126 -153097116 - tRNA-Ile-ATT tRNA tRNA -14 63 1 2082 124 75 29 chr6 29318190 29318538 -153096704 - THE1B LTR MaLR 0 364 1 207 0 0 0 chr6 29319067 29319090 -153096152 + (TA)n Simple_repeat Simple_repeat 1 23 0 300 222 37 25 chr6 29319091 29319172 -153096070 - MIR SINE MIR -71 191 110 437 271 71 9 chr6 29319644 29319869 -153095373 + L1MC/D LINE L1 5266 5504 -2304 365 128 26 39 chr6 29320298 29320376 -153094866 - tRNA-Ser-AGC tRNA tRNA -6 79 3 233 262 40 56 chr6 29321054 29321180 -153094062 + MER5A DNA MER1_type 40 163 -26 2178 113 7 0 chr6 29321966 29322268 -153092974 + AluSx SINE Alu 1 304 -8 605 159 9 35 chr6 29322394 29322498 -153092744 + FLAM_A SINE Alu 22 124 -187 2451 62 3 3 chr6 29322498 29322802 -153092440 - AluSp SINE Alu -9 304 1 300 327 67 53 chr6 29323039 29323546 -153091696 + L1ME2 LINE L1 5387 5900 -264 443 244 24 16 chr6 29323617 29323740 -153091502 + L1MEc LINE L1 107 230 -6166 1738 138 34 28 chr6 29324008 29324299 -153090943 - AluSx SINE Alu -19 293 1 1087 202 39 0 chr6 29324300 29324508 -153090734 - MER58A DNA MER1_type -8 216 1 200 119 0 24 chr6 29324876 29324918 -153090324 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2512 54 0 3 chr6 29325038 29325334 -153089908 - AluY SINE Alu -16 295 1 25 0 0 0 chr6 29325825 29325850 -153089392 + AT_rich Low_complexity Low_complexity 1 25 0 667 27 0 0 chr6 29325870 29325945 -153089297 + tRNA-Thr-ACT tRNA tRNA 1 75 -2 582 207 167 7 chr6 29326718 29326868 -153088374 - MER45A DNA AcHobo -4 174 1 2140 83 54 0 chr6 29327020 29327296 -153087946 + AluSg SINE Alu 6 296 -14 598 82 0 0 chr6 29327724 29327797 -153087445 - tRNA-Val-GTG tRNA tRNA -3 73 1 5967 155 31 9 chr6 29328392 29329529 -153085713 - L1MC1 LINE L1 -1 6612 5453 5575 156 34 22 chr6 29329497 29329636 -153085606 - L1MC1 LINE L1 -5349 1077 941 * 1897 139 37 10 chr6 29329636 29329930 -153085312 - AluSx SINE Alu -10 302 1 5575 156 34 22 chr6 29329930 29330825 -153084417 - L1MC1 LINE L1 -5485 941 31 773 221 33 16 chr6 29330825 29331069 -153084173 - L1M4 LINE L1 -3118 3028 2781 1127 151 0 38 chr6 29331074 29331259 -153083983 - AluSg/x SINE Alu -17 293 116 1352 225 99 47 chr6 29331259 29331567 -153083675 - L1MD2 LINE L1 -21 6221 5930 2179 112 7 0 chr6 29331567 29331861 -153083381 - AluSx SINE Alu -16 296 1 1352 225 99 47 chr6 29331861 29331915 -153083327 - L1MD2 LINE L1 -312 5930 5880 2029 145 0 0 chr6 29331915 29332212 -153083030 + AluSx SINE Alu 1 297 -15 1352 225 99 47 chr6 29332212 29332440 -153082802 - L1MD2 LINE L1 -362 5880 5656 1858 153 19 22 chr6 29332670 29332703 -153082539 - AluSx SINE Alu 0 312 280 199 0 65 0 chr6 29332703 29332734 -153082508 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1858 153 19 22 chr6 29332734 29333013 -153082229 - AluSx SINE Alu -32 280 1 2319 105 0 0 chr6 29333046 29333341 -153081901 - AluSg SINE Alu -15 295 1 2645 49 0 0 chr6 29333415 29333720 -153081522 + AluY SINE Alu 1 305 -6 1566 165 91 15 chr6 29333721 29334061 -153081181 - L1MB4 LINE L1 -8 6172 5807 576 167 74 0 chr6 29334155 29334263 -153080979 - AluJ SINE Alu -7 305 190 915 162 0 0 chr6 29334266 29334408 -153080834 - AluJ SINE Alu -165 147 6 1600 199 10 103 chr6 29334413 29334545 -153080697 - L1 LINE L1 -1972 4174 4031 2152 91 14 14 chr6 29334545 29334841 -153080401 - AluSx SINE Alu -16 296 1 1600 199 10 103 chr6 29334841 29335147 -153080095 - L1 LINE L1 -2115 4031 3785 2011 143 7 3 chr6 29335147 29335448 -153079794 + AluSx SINE Alu 3 304 -8 1600 199 10 103 chr6 29335448 29335505 -153079737 - L1 LINE L1 -2361 3785 3724 576 241 44 16 chr6 29335497 29335746 -153079496 - L1 LINE L1 -2647 3499 3244 * 459 205 0 73 chr6 29337739 29337789 -153077453 - L1 LINE L1 -2837 3309 3257 2080 114 20 3 chr6 29337789 29338088 -153077154 - AluSx SINE Alu -8 304 1 459 205 0 73 chr6 29338088 29338188 -153077054 - L1 LINE L1 -2889 3257 3170 323 206 11 65 chr6 29338219 29338311 -153076931 + MLT2D LTR ERVL 287 373 -41 1050 165 141 20 chr6 29338449 29338698 -153076544 - AluJo SINE Alu -31 281 3 2422 71 7 3 chr6 29338731 29339041 -153076201 - AluSq SINE Alu -2 311 1 1059 99 12 43 chr6 29339077 29339309 -153075933 + AluSp SINE Alu 127 353 0 24 0 0 0 chr6 29339641 29339665 -153075577 + AT_rich Low_complexity Low_complexity 1 24 0 708 207 0 0 chr6 29339673 29339794 -153075448 - FLAM_A SINE Alu -12 121 1 25 0 0 0 chr6 29339902 29339927 -153075315 + AT_rich Low_complexity Low_complexity 1 25 0 2599 46 0 3 chr6 29340097 29340401 -153074841 + AluY SINE Alu 1 303 -8 1737 113 25 0 chr6 29340412 29340651 -153074591 + AluSq SINE Alu 1 245 -68 229 329 105 9 chr6 29340677 29340896 -153074346 - L1MB4 LINE L1 -2009 5799 5560 2214 105 3 9 chr6 29341043 29341358 -153073884 + AluSq SINE Alu 1 313 0 358 253 0 0 chr6 29342932 29343007 -153072235 + tRNA-Val-GTG tRNA tRNA 1 75 -1 226 23 47 47 chr6 29343247 29343290 -153071952 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 1543 152 53 4 chr6 29343312 29343576 -153071666 - AluJb SINE Alu -35 277 1 301 220 127 17 chr6 29343732 29343850 -153071392 - L1MB4 LINE L1 -956 5190 5060 211 185 37 0 chr6 29343877 29343931 -153071311 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1734 105 4 0 chr6 29343933 29344171 -153071071 - AluSp SINE Alu -74 239 1 324 250 11 11 chr6 29344196 29344284 -153070958 + L1MB1 LINE L1 5319 5406 -756 324 194 0 0 chr6 29345087 29345154 -153070088 - L1MB1 LINE L1 -1 6167 6101 852 236 0 43 chr6 29345155 29345363 -153069879 + MER8 DNA MER2_type 4 202 -37 329 87 65 0 chr6 29345371 29345417 -153069825 + AluJo SINE Alu 87 135 -167 253 189 19 0 chr6 29345422 29345475 -153069767 + L1MB1 LINE L1 5725 5778 -390 2091 123 3 23 chr6 29345491 29345800 -153069442 + AluSq SINE Alu 11 313 0 283 145 145 0 chr6 29345800 29345862 -153069380 + L1MB1 LINE L1 5852 5922 -261 1267 134 71 36 chr6 29345915 29346040 -153069202 + L1MB1 LINE L1 5906 6025 -143 2312 132 28 3 chr6 29346040 29346395 -153068847 - THE1B LTR MaLR 0 364 1 1267 134 71 36 chr6 29346395 29346456 -153068786 + L1MB1 LINE L1 6025 6082 -86 1129 214 0 36 chr6 29346456 29346704 -153068538 - MER8 DNA MER2_type 0 239 1 1267 134 71 36 chr6 29346704 29346769 -153068473 + L1MB1 LINE L1 6082 6167 -1 410 200 125 0 chr6 29346876 29346965 -153068277 - AluSg SINE Alu -219 81 1 1991 135 14 7 chr6 29346965 29347334 -153067908 - AluSx SINE Alu 0 371 1 1632 171 129 34 chr6 29347334 29347563 -153067679 - L1M3 LINE L1 -434 5734 5528 185 62 0 31 chr6 29347563 29347595 -153067647 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1632 171 129 34 chr6 29347595 29347991 -153067251 - L1M3 LINE L1 -640 5528 5048 1778 143 0 4 chr6 29347991 29348263 -153066979 - AluJb SINE Alu -41 271 1 243 170 0 0 chr6 29348278 29348325 -153066917 + (CAA)n Simple_repeat Simple_repeat 2 48 0 273 225 0 25 chr6 29348330 29348410 -153066832 + L1 LINE L1 4745 4822 -1324 1919 201 93 8 chr6 29348415 29348887 -153066355 - L1M3 LINE L1 -1422 4724 4213 1066 158 44 35 chr6 29348884 29349112 -153066130 - L1M3 LINE L1 -2289 3857 3628 * 2331 96 3 0 chr6 29349115 29349417 -153065825 + AluSx SINE Alu 1 303 -9 281 198 70 23 chr6 29349417 29349497 -153065745 - L1M3 LINE L1 -3011 3135 3052 2240 86 4 0 chr6 29349500 29349815 -153065427 + AluSp SINE Alu 3 318 0 1088 154 35 0 chr6 29349815 29349984 -153065258 + AluSg/x SINE Alu 134 308 -4 700 217 31 6 chr6 29349987 29350148 -153065094 - L1M3 LINE L1 -3353 2793 2629 228 405 10 20 chr6 29350684 29350879 -153064363 + L2 LINE L2 2785 2977 -337 458 285 0 8 chr6 29351033 29351163 -153064079 + L2 LINE L2 3182 3310 -3 647 106 0 0 chr6 29351173 29351267 -153063975 + AluS SINE Alu 7 100 -212 313 106 47 129 chr6 29351267 29351352 -153063890 - LTR41 LTR ERVL -140 633 556 651 187 32 39 chr6 29351582 29351737 -153063505 - LTR41 LTR ERVL -615 158 5 2324 58 38 0 chr6 29351854 29352146 -153063096 + AluSq SINE Alu 1 303 -10 667 14 0 0 chr6 29352576 29352649 -153062593 - tRNA-Val-GTT tRNA tRNA -3 73 1 31 96 0 0 chr6 29353024 29353118 -153062124 + AT_rich Low_complexity Low_complexity 1 94 0 234 311 0 0 chr6 29353591 29353652 -153061590 - tRNA-Val-GTG tRNA tRNA -15 61 1 825 181 23 53 chr6 29354672 29354843 -153060399 + FAM SINE Alu 2 167 -8 24 32 0 0 chr6 29354856 29354887 -153060355 + AT_rich Low_complexity Low_complexity 1 31 0 763 114 14 71 chr6 29354887 29355027 -153060215 + FLAM_C SINE Alu 1 132 -1 363 328 30 40 chr6 29355267 29355468 -153059774 + MIR SINE MIR 24 222 -40 244 276 198 17 chr6 29355561 29355677 -153059565 - MIR SINE MIR -123 139 3 232 280 75 0 chr6 29356078 29356171 -153059071 - MER5A DNA MER1_type -57 132 33 1564 168 154 9 chr6 29356477 29356912 -153058330 + MER109 Unknown Unknown 1933 2430 -2 664 215 243 42 chr6 29356916 29356965 -153058277 - L1 LINE L1 -1837 4309 4271 213 65 0 0 chr6 29356965 29356996 -153058246 + (TG)n Simple_repeat Simple_repeat 2 32 0 664 215 243 42 chr6 29356996 29357033 -153058209 - L1 LINE L1 -1875 4271 4243 1582 129 36 79 chr6 29357033 29357336 -153057906 + AluJo SINE Alu 1 290 -22 664 215 243 42 chr6 29357336 29357536 -153057706 - L1 LINE L1 -1903 4243 3964 908 168 13 7 chr6 29357556 29357711 -153057531 - AluJb SINE Alu -13 299 144 506 163 0 0 chr6 29357890 29357970 -153057272 - AluJ/FLAM SINE Alu -231 81 2 486 210 0 50 chr6 29358026 29358145 -153057097 + LTR38B LTR ERV1 2 114 -496 264 259 78 128 chr6 29358256 29358653 -153056589 + LTR38B LTR ERV1 183 559 -51 2487 81 3 0 chr6 29358654 29358963 -153056279 - AluSg SINE Alu 0 310 1 296 215 154 0 chr6 29360704 29360769 -153054473 + tRNA-Val-GTG tRNA tRNA 1 75 -1 189 74 0 0 chr6 29360779 29360806 -153054436 + (TC)n Simple_repeat Simple_repeat 2 28 0 664 256 36 31 chr6 29360869 29361064 -153054178 - MLT1D LTR MaLR -48 457 262 2634 46 7 0 chr6 29361068 29361404 -153053838 - AluY SINE Alu 0 338 1 955 142 119 28 chr6 29362574 29362792 -153052450 - MER31B LTR ERV1 -1 465 228 423 0 0 0 chr6 29362800 29362847 -153052395 + (T)n Simple_repeat Simple_repeat 1 47 0 2366 70 3 0 chr6 29362866 29363152 -153052090 + AluSp SINE Alu 1 287 -26 363 136 0 0 chr6 29363170 29363229 -153052013 + (CA)n Simple_repeat Simple_repeat 2 60 0 632 213 97 63 chr6 29363243 29363450 -153051792 - MER31B LTR ERV1 -252 214 1 2479 169 31 5 chr6 29364103 29364516 -153050726 + MER70B LTR ERVL 155 578 0 1943 188 30 3 chr6 29364518 29364879 -153050363 + MER70B-int LTR ERVL 1 371 -4652 5268 230 57 35 chr6 29366146 29367769 -153047473 + MER70B-int LTR ERVL 787 3092 -2438 2402 187 10 5 chr6 29367862 29368280 -153046962 + MER70B-int LTR ERVL 3580 3999 -1024 2288 229 27 4 chr6 29368287 29368768 -153046474 + MER70B LTR ERVL 32 523 -55 2198 66 7 31 chr6 29368938 29369271 -153045971 + AluY SINE Alu 1 326 0 1032 104 15 0 chr6 29369287 29369422 -153045820 + AluSg SINE Alu 1 137 -173 484 35 0 0 chr6 29369422 29369480 -153045762 + AluY SINE Alu 241 298 -14 2398 172 37 80 chr6 29369622 29370266 -153044976 - LTR6A LTR ERV1 0 564 1 633 174 106 8 chr6 29370385 29370517 -153044725 - MLT1G1 LTR MaLR -3 592 448 266 293 13 0 chr6 29370511 29370586 -153044656 - MLT1B LTR MaLR -197 345 270 * 719 214 17 17 chr6 29370813 29370986 -153044256 + L1M4 LINE L1 2283 2455 -3691 758 145 0 99 chr6 29370988 29371140 -153044102 + MLT1B LTR MaLR 1 137 -253 626 164 90 8 chr6 29371168 29371302 -153043940 - MLT1B LTR MaLR -245 145 1 347 71 0 0 chr6 29371506 29371548 -153043694 - 5S rRNA rRNA -79 42 1 672 221 14 0 chr6 29371992 29372132 -153043110 - MER41E LTR ERV1 -355 157 16 1220 132 0 77 chr6 29372743 29372963 -153042279 + AluJo SINE Alu 100 302 -10 184 270 0 0 chr6 29373017 29373054 -153042188 + MIR SINE MIR 112 148 -114 2095 170 86 30 chr6 29373083 29373547 -153041695 + LTR2B LTR ERV1 1 490 0 8668 43 0 0 chr6 29373636 29374605 -153040637 - LTR5 LTR ERVK 0 969 1 1934 242 44 8 chr6 29374928 29375360 -153039882 + MER41E LTR ERV1 21 473 -39 180 0 0 0 chr6 29375360 29375380 -153039862 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 1934 242 44 8 chr6 29375380 29375422 -153039820 + MER41E LTR ERV1 473 512 0 3443 114 15 34 chr6 29375460 29375993 -153039249 - MER1A DNA MER1_type -4 523 1 186 133 0 0 chr6 29376183 29376213 -153039029 + (A)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr6 29376982 29377008 -153038234 + (CAA)n Simple_repeat Simple_repeat 2 27 0 633 14 0 0 chr6 29377061 29377133 -153038109 + tRNA-Met-i tRNA tRNA 1 72 -3 24 0 0 0 chr6 29377215 29377239 -153038003 + AT_rich Low_complexity Low_complexity 1 24 0 228 35 0 0 chr6 29377239 29377268 -153037974 + (TC)n Simple_repeat Simple_repeat 2 30 0 459 310 180 8 chr6 29377381 29377636 -153037606 + Charlie2b DNA MER1_type 834 1132 -1650 236 222 25 37 chr6 29377942 29378023 -153037219 + L1MC4a LINE L1 5740 5819 -1989 817 250 93 7 chr6 29378025 29378305 -153036937 + L1MC4a LINE L1 5851 6154 -1654 312 143 0 0 chr6 29378324 29378380 -153036862 + MER51B-int LTR ERV1 2084 2139 -3078 * 1904 121 92 8 chr6 29378353 29378727 -153036515 + MER51B-int LTR ERV1 2340 5375 -2043 461 120 109 11 chr6 29378726 29378818 -153036424 + MER51B-int LTR ERV1 5249 5349 -2188 * 624 163 93 16 chr6 29378808 29378937 -153036305 + MER51B-int LTR ERV1 5620 5758 -1779 8177 125 33 1 chr6 29380335 29381650 -153033592 + MER51B-int LTR ERV1 5744 7147 -390 615 234 15 0 chr6 29381650 29381787 -153033455 + LTR54B LTR ERV1 3 141 -357 2478 127 3 0 chr6 29381787 29382133 -153033109 + MER51B-int LTR ERV1 7470 7816 0 2247 114 77 3 chr6 29382134 29382485 -153032757 + MER51B LTR ERV1 1 377 0 299 275 90 76 chr6 29382517 29382612 -153032630 + L1MC4a LINE L1 6055 6147 -1661 2176 133 0 0 chr6 29382612 29382914 -153032328 - AluSx SINE Alu -10 302 1 299 275 90 76 chr6 29382914 29383029 -153032213 + L1MC4a LINE L1 6147 6268 -1540 948 227 32 141 chr6 29383228 29383454 -153031788 + L1MC4 LINE L1 6418 6667 -1375 2015 123 17 3 chr6 29383454 29383747 -153031495 - AluSx SINE Alu -15 297 1 948 227 32 141 chr6 29383747 29384088 -153031154 + L1MC4 LINE L1 6667 6923 -1119 1928 97 0 19 chr6 29384092 29384361 -153030881 + AluSc SINE Alu 34 297 -12 860 171 80 0 chr6 29384405 29384581 -153030661 - LTR47A LTR ERVL -2 450 261 529 256 30 6 chr6 29384831 29384995 -153030247 + L1MC4 LINE L1 6958 7125 -917 188 292 21 52 chr6 29385373 29385469 -153029773 + L2 LINE L2 3210 3302 -11 216 0 0 0 chr6 29386584 29386608 -153028634 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2469 53 0 7 chr6 29386951 29387251 -153027991 - AluY SINE Alu -13 298 1 1923 138 34 0 chr6 29387362 29387660 -153027582 - AluSx SINE Alu -4 308 1 2380 72 0 0 chr6 29387707 29387997 -153027245 + AluSc SINE Alu 1 290 -19 206 318 24 0 chr6 29388382 29388467 -153026775 + GA-rich Low_complexity Low_complexity 2 88 0 1879 104 0 8 chr6 29389071 29389330 -153025912 - AluSc SINE Alu -52 257 1 685 285 64 37 chr6 29389779 29390344 -153024898 - Charlie2 DNA MER1_type -38 2824 2245 605 42 0 0 chr6 29390533 29390604 -153024638 - tRNA-Gln-CAA tRNA tRNA -4 71 1 310 322 34 0 chr6 29390797 29390915 -153024327 - MIR SINE MIR -20 242 121 21 0 0 0 chr6 29392614 29392635 -153022607 + AT_rich Low_complexity Low_complexity 1 21 0 2121 100 31 17 chr6 29392768 29393059 -153022183 - AluSx SINE Alu -17 295 1 259 217 0 0 chr6 29394533 29394579 -153020663 + tRNA-Ser-AGC tRNA tRNA 33 78 -7 659 27 0 0 chr6 29395035 29395109 -153020133 - tRNA-Gln-CAA tRNA tRNA -1 74 1 512 272 70 6 chr6 29395195 29395353 -153019889 + MER20B DNA MER1_type 5 172 -611 215 211 77 0 chr6 29395495 29395547 -153019695 - L2 LINE L2 -511 2803 2748 1435 235 95 28 chr6 29395547 29395938 -153019304 + MLT1G LTR MaLR 172 588 -2 4272 71 15 121 chr6 29395971 29396089 -153019153 + MER4A LTR ERV1 2 131 -533 702 0 0 0 chr6 29396089 29396167 -153019075 + (TTTTA)n Simple_repeat Simple_repeat 3 80 0 4272 71 15 121 chr6 29396167 29396183 -153019059 + MER4A LTR ERV1 131 147 -517 835 97 8 15 chr6 29396183 29396317 -153018925 + FLAM_C SINE Alu 1 133 0 4272 71 15 121 chr6 29396317 29396923 -153018319 + MER4A LTR ERV1 147 664 0 556 304 157 15 chr6 29397472 29397874 -153017368 + L2 LINE L2 2843 3301 -12 2175 114 0 0 chr6 29398043 29398348 -153016894 - AluSx SINE Alu 0 305 1 227 367 23 8 chr6 29398364 29398492 -153016750 - MIR SINE MIR -65 197 68 205 51 51 0 chr6 29398551 29398590 -153016652 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2211 101 16 13 chr6 29398956 29399263 -153015979 + AluSx SINE Alu 1 308 -4 2385 85 0 13 chr6 29399357 29399662 -153015580 + AluSx SINE Alu 1 301 -11 5222 75 25 3 chr6 29399711 29400387 -153014855 + LTR8 LTR ERV1 1 691 0 2176 96 7 0 chr6 29400798 29401121 -153014121 + AluSx SINE Alu 1 325 0 874 225 86 94 chr6 29401234 29401629 -153013613 + MSTD LTR MaLR 1 392 -4 2186 101 0 26 chr6 29402068 29402374 -153012868 - AluSx SINE Alu -14 298 1 2334 85 3 0 chr6 29402379 29402674 -153012568 - AluSp SINE Alu -17 296 1 396 0 0 0 chr6 29402702 29402746 -153012496 + (CA)n Simple_repeat Simple_repeat 1 44 0 1641 231 25 0 chr6 29402870 29403195 -153012047 - MLT1A1 LTR MaLR -2 363 31 2324 89 13 0 chr6 29403456 29403759 -153011483 + AluSq SINE Alu 1 307 -6 258 280 0 40 chr6 29404577 29404652 -153010590 - L1MC/D LINE L1 -1907 5901 5830 695 264 11 77 chr6 29404656 29404740 -153010502 + MIR SINE MIR 4 92 -170 2083 157 117 15 chr6 29404740 29405141 -153010101 - MER65A LTR ERV1 -3 442 1 695 264 11 77 chr6 29405141 29405317 -153009925 + MIR SINE MIR 92 247 -15 627 250 159 17 chr6 29405356 29405588 -153009654 - L1MC/D LINE L1 -2023 5785 5521 1977 135 0 0 chr6 29405826 29406114 -153009128 - AluJb SINE Alu -20 292 5 513 207 165 0 chr6 29408748 29409024 -153006218 + MER33 DNA MER1_type 1 362 -1 242 304 216 6 chr6 29410470 29410641 -153004601 + L2 LINE L2 3107 3313 0 26 50 0 0 chr6 29411153 29411193 -153004049 + AT_rich Low_complexity Low_complexity 1 40 0 1712 116 0 8 chr6 29411670 29411912 -153003330 + AluSg/x SINE Alu 68 307 -3 2100 135 10 0 chr6 29412046 29412350 -153002892 + AluJo SINE Alu 1 307 -5 738 93 19 0 chr6 29413190 29413298 -153001944 + AluSq/x SINE Alu 2 111 -202 186 43 0 0 chr6 29413341 29413364 -153001878 + (A)n Simple_repeat Simple_repeat 1 23 0 2039 140 7 0 chr6 29414763 29415071 -153000171 - AluSx SINE Alu -2 310 1 566 247 35 29 chr6 29415072 29415242 -153000000 - MER4D LTR ERV1 -26 877 707 2135 92 7 20 chr6 29415246 29415538 -152999704 + AluSx SINE Alu 3 290 -22 2263 189 93 42 chr6 29415971 29416584 -152998658 - LTR48B LTR ERV1 0 644 1 2000 146 7 0 chr6 29416675 29416970 -152998272 + AluSx SINE Alu 1 297 -15 1853 152 3 14 chr6 29417019 29417309 -152997933 - AluJb SINE Alu -25 287 1 198 0 0 0 chr6 29417739 29417761 -152997481 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2147 122 0 10 chr6 29417761 29418049 -152997193 - AluSx SINE Alu -27 285 1 2558 73 0 0 chr6 29418504 29418807 -152996435 - AluY SINE Alu -8 303 1 2680 174 40 29 chr6 29418869 29419419 -152995823 + MER34B LTR ERV1 10 565 0 2057 103 48 3 chr6 29419648 29419938 -152995304 + AluSg SINE Alu 1 303 -7 23 97 0 0 chr6 29420112 29420184 -152995058 + AT_rich Low_complexity Low_complexity 1 72 0 1378 247 65 53 chr6 29420671 29421161 -152994081 - MER21B LTR ERV1 -123 740 245 2709 113 75 0 chr6 29421161 29421585 -152993657 - MER39B LTR ERV1 0 653 198 2089 151 0 0 chr6 29421594 29421906 -152993336 - AluSx SINE Alu 0 312 1 28 0 0 0 chr6 29422781 29422809 -152992433 + AT_rich Low_complexity Low_complexity 1 28 0 645 191 7 22 chr6 29422859 29422995 -152992247 - AluJo SINE Alu -176 136 3 1717 102 45 4 chr6 29423984 29424228 -152991014 - AluSc SINE Alu -22 287 34 1416 188 238 0 chr6 29424296 29424717 -152990525 - L1MA9 LINE L1 -55 6257 5737 234 0 0 0 chr6 29424995 29425021 -152990221 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4748 126 40 19 chr6 29425021 29425801 -152989441 - LTR5 LTR ERVK -172 797 2 6143 69 21 72 chr6 29425802 29427690 -152987552 - SVA Other Other -519 936 8 323 132 15 0 chr6 29427796 29427864 -152987378 + (TA)n Simple_repeat Simple_repeat 2 70 0 1663 172 32 7 chr6 29427864 29428149 -152987093 - AluSx SINE Alu -20 292 1 334 214 16 87 chr6 29428286 29428412 -152986830 + MIR SINE MIR 77 193 -69 521 119 24 0 chr6 29428413 29428497 -152986745 + BC200 scRNA scRNA 5 90 -110 219 36 0 0 chr6 29428651 29428679 -152986563 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1686 163 4 4 chr6 29428684 29428954 -152986288 - AluSx SINE Alu -42 270 1 194 118 88 0 chr6 29429454 29429488 -152985754 + MER5B DNA MER1_type 74 110 -68 622 200 103 0 chr6 29429947 29430112 -152985130 + AluJo SINE Alu 2 183 -129 28 29 0 0 chr6 29431346 29431381 -152983861 + AT_rich Low_complexity Low_complexity 1 35 0 2124 106 3 3 chr6 29431620 29431912 -152983330 - AluSc SINE Alu -15 294 3 2319 87 0 13 chr6 29432044 29432354 -152982888 - AluSg SINE Alu -4 306 1 511 224 130 84 chr6 29432608 29432907 -152982335 + LTR29 LTR ERV1 1 313 -309 2023 121 7 3 chr6 29432907 29433197 -152982045 + AluSq SINE Alu 6 296 -17 836 169 0 68 chr6 29433197 29433374 -152981868 + AluSg/x SINE Alu 134 298 -14 783 226 60 24 chr6 29433379 29433631 -152981611 + LTR48B LTR ERV1 348 608 -36 552 94 13 188 chr6 29433700 29433849 -152981393 + FLAM_A SINE Alu 20 142 0 22 35 0 0 chr6 29434010 29434039 -152981203 + AT_rich Low_complexity Low_complexity 1 29 0 606 137 21 0 chr6 29434053 29434148 -152981094 + LTR29 LTR ERV1 1 97 -525 680 143 118 18 chr6 29434194 29434468 -152980774 + LTR49 LTR ERV1 227 566 -29 22 35 0 0 chr6 29434963 29434992 -152980250 + AT_rich Low_complexity Low_complexity 1 29 0 299 294 39 10 chr6 29435645 29435747 -152979495 + L2 LINE L2 3200 3304 -9 1232 157 96 9 chr6 29435972 29436201 -152979041 - AluJo SINE Alu -27 285 37 2959 157 73 36 chr6 29436210 29436842 -152978400 - MER51D LTR ERV1 -2 655 1 2056 109 14 3 chr6 29438390 29438683 -152976559 + AluSq SINE Alu 13 308 -5 765 172 0 0 chr6 29439800 29439969 -152975273 + FLAM_C SINE Alu 2 170 0 2242 112 0 3 chr6 29440216 29440520 -152974722 - AluSg SINE Alu -7 303 1 249 102 51 17 chr6 29441205 29441264 -152973978 + (TATG)n Simple_repeat Simple_repeat 2 62 0 384 111 0 0 chr6 29442095 29442158 -152973084 + (TA)n Simple_repeat Simple_repeat 1 63 0 180 0 0 0 chr6 29442242 29442262 -152972980 + (T)n Simple_repeat Simple_repeat 1 20 0 209 33 33 0 chr6 29442479 29442509 -152972733 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 2251 115 0 0 chr6 29442842 29443137 -152972105 + AluSx SINE Alu 3 297 -15 1670 263 111 27 chr6 29443619 29444284 -152970958 - MER20B DNA MER1_type 0 783 63 2566 71 3 0 chr6 29445781 29446089 -152969153 + AluY SINE Alu 2 310 -1 555 294 129 26 chr6 29446224 29446639 -152968603 + L2 LINE L2 2565 3031 -282 220 156 44 0 chr6 29447367 29447412 -152967830 + L2 LINE L2 3267 3313 0 221 300 0 14 chr6 29447416 29447486 -152967756 + CT-rich Low_complexity Low_complexity 1 69 0 369 0 0 0 chr6 29447488 29447529 -152967713 + (CA)n Simple_repeat Simple_repeat 2 42 0 196 296 0 28 chr6 29447588 29447659 -152967583 + MIR3 SINE MIR 113 181 -27 806 206 6 12 chr6 29447910 29448075 -152967167 + FRAM SINE Alu 1 163 -13 2315 95 7 0 chr6 29448268 29448562 -152966680 + AluSp SINE Alu 1 296 -17 353 234 122 0 chr6 29451175 29451282 -152963960 + Charlie1 DNA MER1_type 8 127 -2634 1119 125 144 12 chr6 29451293 29451549 -152963693 + Charlie1 DNA MER1_type 2410 2699 -62 339 186 0 0 chr6 29451732 29451791 -152963451 + Charlie1 DNA MER1_type 2703 2761 0 753 210 63 77 chr6 29452350 29452604 -152962638 + LTR48B LTR ERV1 229 534 -110 2325 71 0 3 chr6 29452604 29452898 -152962344 - AluY SINE Alu -18 293 1 753 210 63 77 chr6 29452898 29453008 -152962234 + LTR48B LTR ERV1 534 644 0 21 0 0 0 chr6 29453341 29453362 -152961880 + AT_rich Low_complexity Low_complexity 1 21 0 2268 92 3 0 chr6 29454129 29454437 -152960805 + AluSx SINE Alu 1 309 0 233 313 52 35 chr6 29454546 29454661 -152960581 - MIR SINE MIR -85 177 61 829 125 20 120 chr6 29455533 29455626 -152959616 + MLT1B LTR MaLR 1 102 -288 2643 50 0 0 chr6 29455626 29455925 -152959317 - AluY SINE Alu -5 306 8 829 125 20 120 chr6 29455925 29456000 -152959242 + MLT1B LTR MaLR 102 149 -241 2894 19 0 0 chr6 29456000 29456316 -152958926 - AluYb8 SINE Alu -2 316 1 829 125 20 120 chr6 29456316 29456346 -152958896 + MLT1B LTR MaLR 149 180 -210 458 202 0 0 chr6 29456347 29456431 -152958811 + AluJ/FLAM SINE Alu 2 85 -227 936 154 34 69 chr6 29456464 29456780 -152958462 + MLT1B LTR MaLR 169 390 0 225 301 177 0 chr6 29456821 29456934 -152958308 + MIR SINE MIR 118 250 -12 894 257 39 63 chr6 29457633 29458045 -152957197 - MER113 DNA MER1_type? 0 521 120 1091 216 125 0 chr6 29458201 29458488 -152956754 - MER2 DNA MER2_type -4 341 19 1123 204 151 48 chr6 29458700 29459092 -152956150 - MLT1F LTR MaLR -66 476 45 2090 109 3 7 chr6 29459193 29459514 -152955728 + AluSp SINE Alu 1 320 0 768 284 69 68 chr6 29460119 29460624 -152954618 + L2 LINE L2 2776 3304 -9 2079 127 0 10 chr6 29461483 29461790 -152953452 - AluSx SINE Alu -1 311 8 1873 137 3 16 chr6 29463624 29463939 -152951303 + AluSx SINE Alu 1 311 -1 1957 139 10 7 chr6 29463942 29464252 -152950990 + AluSx SINE Alu 2 312 0 1387 182 76 4 chr6 29465209 29465484 -152949758 + AluJb SINE Alu 1 295 -17 488 230 71 0 chr6 29468080 29468193 -152947049 + MER58 DNA MER1_type 2 122 -93 1640 200 0 7 chr6 29468197 29468487 -152946755 + AluJb SINE Alu 1 288 -24 271 211 0 35 chr6 29468513 29468570 -152946672 + MER58 DNA MER1_type 2342 2396 -24 293 315 9 19 chr6 29468858 29468966 -152946276 - MIR SINE MIR -123 139 33 624 118 0 0 chr6 29469182 29469267 -152945975 - MER30B DNA MER1_type -5 185 101 301 42 21 21 chr6 29469269 29469279 -152945963 + (TTCC)n Simple_repeat Simple_repeat 3 12 -38 1855 87 116 29 chr6 29469279 29469555 -152945687 - AluSg SINE Alu -6 304 5 301 42 21 21 chr6 29469555 29469592 -152945650 + (TTCC)n Simple_repeat Simple_repeat 11 50 0 699 113 19 0 chr6 29469592 29469698 -152945544 - MER30B DNA MER1_type -78 112 5 418 253 173 19 chr6 29470257 29470419 -152944823 - L1PB4 LINE L1 -23 6133 5947 1733 90 16 12 chr6 29470439 29470695 -152944547 - AluSc SINE Alu -16 293 37 427 243 111 22 chr6 29471971 29472152 -152943090 - MER58A DNA MER1_type -1 223 27 230 26 263 0 chr6 29472658 29472696 -152942546 + LTR10B LTR ERV1 210 257 -290 1868 107 13 47 chr6 29473532 29473830 -152941412 + AluSg SINE Alu 1 288 -22 2106 92 6 78 chr6 29474107 29474442 -152940800 - AluSq SINE Alu -2 311 1 1017 83 0 0 chr6 29474444 29474576 -152940666 - AluY SINE Alu -178 133 2 328 109 0 0 chr6 29474686 29474741 -152940501 - AluJb SINE Alu 0 302 248 1127 196 0 25 chr6 29474741 29474945 -152940297 - AluJb SINE Alu -113 199 1 2868 13 0 3 chr6 29475051 29475363 -152939879 + AluYa5 SINE Alu 1 311 0 1560 173 4 4 chr6 29475518 29475784 -152939458 + AluSx SINE Alu 47 312 0 22 56 0 0 chr6 29475849 29475885 -152939357 + AT_rich Low_complexity Low_complexity 1 36 0 2334 73 0 17 chr6 29475910 29476212 -152939030 + AluSc SINE Alu 1 297 -12 645 135 19 0 chr6 29476395 29476499 -152938743 - LTR8 LTR ERV1 -23 668 563 336 158 0 40 chr6 29476500 29476576 -152938666 - LTR30 LTR ERV1 -98 624 552 3430 111 60 0 chr6 29479248 29479616 -152935626 - LTR8 LTR ERV1 -157 534 127 2005 104 0 0 chr6 29479616 29479885 -152935357 - AluSg SINE Alu -17 293 25 3430 111 60 0 chr6 29479885 29480020 -152935222 - LTR8 LTR ERV1 -564 127 1 278 98 20 0 chr6 29480229 29480280 -152934962 + (CA)n Simple_repeat Simple_repeat 1 52 0 1990 118 30 7 chr6 29480529 29480833 -152934409 - AluSx SINE Alu -1 311 1 817 219 6 0 chr6 29480884 29481048 -152934194 + FRAM SINE Alu 1 165 -1 1454 116 132 0 chr6 29481120 29481418 -152933824 - AluSp SINE Alu 0 331 1 1852 106 58 4 chr6 29481484 29481758 -152933484 - AluSx SINE Alu -23 289 1 267 128 64 0 chr6 29481831 29481878 -152933364 - LTR24C LTR ERV1 -2 633 584 736 95 0 95 chr6 29481880 29481937 -152933305 + FLAM_C SINE Alu 2 63 -249 4064 87 30 0 chr6 29481937 29482475 -152932767 + MER41A LTR ERV1 1 554 0 736 95 0 95 chr6 29482475 29482554 -152932688 + FLAM_C SINE Alu 63 125 -187 1748 149 159 25 chr6 29482563 29482965 -152932277 - LTR24C LTR ERV1 -36 599 144 * 2700 155 16 79 chr6 29482933 29483044 -152932198 - LTR29 LTR ERV1 -50 572 456 2534 66 0 3 chr6 29483044 29483347 -152931895 - AluY SINE Alu -9 302 1 2747 45 0 0 chr6 29483355 29483666 -152931576 - AluY SINE Alu 0 311 1 2700 155 16 79 chr6 29483666 29483901 -152931341 - LTR29 LTR ERV1 -173 449 268 2538 69 0 3 chr6 29483901 29484207 -152931035 - AluSp SINE Alu -8 305 1 2700 155 16 79 chr6 29484207 29484458 -152930784 - LTR29 LTR ERV1 -354 268 3 1597 126 55 11 chr6 29484458 29484717 -152930525 - LTR24B LTR ERV1 -286 290 17 1991 110 45 3 chr6 29484717 29485009 -152930233 - AluSc SINE Alu -5 304 1 1597 126 55 11 chr6 29485009 29485020 -152930222 - LTR24B LTR ERV1 -559 17 8 561 170 40 0 chr6 29485370 29485470 -152929772 + MLT1A1 LTR MaLR 1 104 -261 * 836 231 50 36 chr6 29485467 29485770 -152929472 + LTR48B LTR ERV1 338 644 0 597 111 0 0 chr6 29485912 29485993 -152929249 - AluSg/x SINE Alu -16 296 216 1750 136 0 11 chr6 29485994 29486258 -152928984 - AluSx SINE Alu -51 261 1 2337 71 30 3 chr6 29486351 29486648 -152928594 + AluY SINE Alu 1 305 -6 32 0 0 0 chr6 29486843 29486875 -152928367 + AT_rich Low_complexity Low_complexity 1 32 0 318 169 26 90 chr6 29487038 29487185 -152928057 - LTR49 LTR ERV1 -16 740 508 3006 159 20 4 chr6 29487187 29487691 -152927551 - MER41E LTR ERV1 0 512 1 698 202 69 95 chr6 29487846 29488220 -152927022 - LTR49 LTR ERV1 -292 303 5 229 121 0 0 chr6 29488191 29488224 -152927018 - MER34B LTR ERV1 -532 33 1 * 212 350 10 29 chr6 29488265 29488368 -152926874 - MIR SINE MIR -6 256 156 1387 162 128 25 chr6 29488371 29488560 -152926682 + LTR49 LTR ERV1 1 169 -453 1486 190 35 10 chr6 29488560 29488850 -152926392 - AluJo SINE Alu -11 301 5 1387 162 128 25 chr6 29488850 29489142 -152926100 + LTR49 LTR ERV1 169 609 -13 2103 100 23 10 chr6 29490119 29490420 -152924822 - AluSx SINE Alu -7 305 1 1093 161 92 65 chr6 29491086 29491242 -152924000 - AluJo SINE Alu -2 300 131 2039 81 53 3 chr6 29491242 29491527 -152923715 - AluSc SINE Alu -10 299 1 1093 161 92 65 chr6 29491527 29491662 -152923580 - AluJo SINE Alu -171 131 1 2018 134 7 3 chr6 29493312 29493617 -152921625 - AluSg1 SINE Alu -3 306 1 485 172 86 66 chr6 29495205 29495323 -152919919 - MLT1B LTR MaLR -236 154 31 1688 124 113 15 chr6 29495323 29495597 -152919645 - AluSg SINE Alu -9 301 1 485 172 86 66 chr6 29495597 29495629 -152919613 - MLT1B LTR MaLR -359 31 1 494 287 24 0 chr6 29495820 29495984 -152919258 - Charlie8 DNA MER1_type -1955 462 295 407 100 17 0 chr6 29496682 29496742 -152918500 - U7 snRNA snRNA -1 62 2 22 0 0 0 chr6 29496742 29496764 -152918478 + AT_rich Low_complexity Low_complexity 1 22 0 3502 115 28 48 chr6 29496799 29497478 -152917764 + MER39B LTR ERV1 1 643 -10 1599 172 52 3 chr6 29497501 29497792 -152917450 - AluJb SINE Alu -7 305 1 325 311 0 0 chr6 29497813 29497903 -152917339 + MER34 LTR ERV1 1 90 -452 260 228 44 95 chr6 29497900 29498058 -152917184 + LTR48 LTR ERV1 160 309 -478 * 1967 186 37 16 chr6 29498673 29498858 -152916384 - MER65A LTR ERV1 0 445 265 4405 102 62 57 chr6 29498858 29499633 -152915609 + MER4E LTR ERV1 1 779 0 1967 186 37 16 chr6 29499633 29499883 -152915359 - MER65A LTR ERV1 -180 265 1 1543 115 9 5 chr6 29500237 29500455 -152914787 + AluSg/x SINE Alu 74 292 -20 336 328 61 40 chr6 29500775 29500973 -152914269 - L2 LINE L2 -10 3303 3102 1243 175 45 84 chr6 29501010 29501319 -152913923 + AluJo SINE Alu 1 297 -15 37 0 0 0 chr6 29501319 29501356 -152913886 + AT_rich Low_complexity Low_complexity 1 37 0 650 0 0 0 chr6 29501669 29501741 -152913501 - tRNA-Met-i tRNA tRNA -3 72 1 637 0 0 0 chr6 29502084 29502155 -152913087 - tRNA-Gly-GGC tRNA tRNA -3 71 1 216 189 0 0 chr6 29502563 29502600 -152912642 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 207 0 0 0 chr6 29502601 29502624 -152912618 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2103 104 3 10 chr6 29502627 29502916 -152912326 - AluSx SINE Alu -24 288 2 388 202 21 0 chr6 29502919 29503013 -152912229 - L1MEc LINE L1 -4027 2369 2274 810 240 124 103 chr6 29503560 29504044 -152911198 + MLT1D LTR MaLR 12 505 0 209 237 0 0 chr6 29504185 29504223 -152911019 - L3 LINE CR1 -23 1554 1517 501 343 60 29 chr6 29504577 29504924 -152910318 - L3 LINE CR1 -159 1418 1061 216 372 67 16 chr6 29505064 29505376 -152909866 - L3 LINE CR1 -820 757 430 5441 118 26 10 chr6 29505379 29505702 -152909540 + L1PA16 LINE L1 4124 4440 -1726 2150 66 3 78 chr6 29505702 29506022 -152909220 + AluY SINE Alu 1 296 -15 5441 118 26 10 chr6 29506022 29507726 -152907516 + L1PA16 LINE L1 4440 6166 0 2152 124 0 7 chr6 29507745 29508044 -152907198 + AluSx SINE Alu 1 297 -15 896 195 11 26 chr6 29508514 29508704 -152906538 + MER5A DNA MER1_type 1 187 -2 2332 90 3 3 chr6 29509100 29509401 -152905841 - AluSx SINE Alu -11 301 1 297 0 0 0 chr6 29509749 29509782 -152905460 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 98 0 0 chr6 29510198 29510239 -152905003 + (TG)n Simple_repeat Simple_repeat 2 42 0 2339 82 13 0 chr6 29511736 29512042 -152903200 - AluSp SINE Alu -3 310 1 1809 201 53 54 chr6 29512518 29512875 -152902367 - MER44D DNA MER2_type -1882 605 193 1285 98 53 114 chr6 29512875 29513120 -152902122 - MER30 DNA MER1_type 0 230 1 1809 201 53 54 chr6 29513120 29513313 -152901929 - MER44D DNA MER2_type -2294 193 1 28 61 0 0 chr6 29514072 29514121 -152901121 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr6 29514470 29514492 -152900750 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr6 29515514 29515552 -152899690 + AT_rich Low_complexity Low_complexity 1 38 0 821 21 0 0 chr6 29515552 29515649 -152899593 - L1PA4 LINE L1 -3 6152 6056 440 37 0 0 chr6 29515649 29515703 -152899539 + L1PA5 LINE L1 6066 6119 -35 351 297 18 18 chr6 29515789 29515900 -152899342 + MIR SINE MIR 42 152 -56 30 0 0 0 chr6 29517103 29517133 -152898109 + AT_rich Low_complexity Low_complexity 1 30 0 2270 95 10 3 chr6 29517162 29517457 -152897785 - AluSg SINE Alu -13 297 1 240 305 39 18 chr6 29518146 29518378 -152896864 + L1M1 LINE L1 5497 5735 -568 21 0 0 0 chr6 29518551 29518572 -152896670 + AT_rich Low_complexity Low_complexity 1 21 0 200 182 0 0 chr6 29518717 29518750 -152896492 + GA-rich Low_complexity Low_complexity 3 35 0 228 35 0 0 chr6 29518938 29518967 -152896275 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1914 132 0 21 chr6 29518980 29519260 -152895982 - AluSx SINE Alu -38 274 1 282 336 39 0 chr6 29519468 29519596 -152895646 - MIR SINE MIR -26 236 104 186 176 0 0 chr6 29519641 29519692 -152895550 + T-rich Low_complexity Low_complexity 1 51 0 2762 260 94 17 chr6 29520119 29521388 -152893854 - L1MC4 LINE L1 -145 7897 6441 2110 218 61 17 chr6 29521491 29522243 -152892999 - L1ME2 LINE L1 -228 5936 5147 1215 243 92 32 chr6 29522334 29522737 -152892505 - MER69 DNA AcHobo -2099 427 1 22 0 0 0 chr6 29522880 29522902 -152892340 + AT_rich Low_complexity Low_complexity 1 22 0 901 146 70 49 chr6 29523000 29523185 -152892057 - BC200 scRNA scRNA -7 193 5 323 293 120 0 chr6 29523768 29523918 -152891324 + ERVL LTR ERVL 2323 2490 -3274 269 224 60 0 chr6 29523918 29523985 -152891257 + MER76 LTR ERV 595 665 -23 * 512 227 21 14 chr6 29523972 29524113 -152891129 + MLT1D LTR MaLR 362 503 -2 257 352 44 32 chr6 29524156 29524406 -152890836 + ERVL LTR ERVL 3007 3259 -2226 200 35 35 0 chr6 29524510 29524539 -152890703 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 223 214 18 0 chr6 29524570 29524626 -152890616 + (TA)n Simple_repeat Simple_repeat 1 57 0 7277 172 36 66 chr6 29524679 29524838 -152890404 - L1MC4a LINE L1 0 7808 7646 2036 133 0 7 chr6 29524838 29525138 -152890104 + AluSx SINE Alu 1 298 -14 7277 172 36 66 chr6 29525138 29526216 -152889026 - L1MC4a LINE L1 -162 7646 6646 213 39 0 0 chr6 29526216 29526242 -152889000 + (TG)n Simple_repeat Simple_repeat 1 26 0 7277 172 36 66 chr6 29526242 29526953 -152888289 - L1MC4a LINE L1 -1162 6646 5916 2148 136 0 25 chr6 29526993 29527309 -152887933 + AluSx SINE Alu 5 312 0 1767 112 59 24 chr6 29527309 29527596 -152887646 - THE1B LTR MaLR -67 297 1 12350 84 1 0 chr6 29527596 29529175 -152886067 - THE1B-int LTR MaLR 0 1580 1 2286 98 72 20 chr6 29529175 29529521 -152885721 - THE1B LTR MaLR 0 364 1 224 319 43 0 chr6 29529652 29529721 -152885521 - MIR SINE MIR -20 242 171 24 32 0 0 chr6 29531345 29531376 -152883866 + AT_rich Low_complexity Low_complexity 1 31 0 209 189 0 0 chr6 29532153 29532190 -152883052 + (TG)n Simple_repeat Simple_repeat 1 37 0 250 355 133 15 chr6 29534333 29534536 -152880706 + MIR SINE MIR 31 257 -5 24 53 0 0 chr6 29534537 29534575 -152880667 + AT_rich Low_complexity Low_complexity 1 38 0 2015 124 0 48 chr6 29535931 29536245 -152878997 - AluSx SINE Alu -11 301 3 1671 164 25 7 chr6 29537733 29538008 -152877234 + AluJo SINE Alu 1 280 -32 603 94 19 9 chr6 29538008 29538114 -152877128 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 842 278 90 34 chr6 29540428 29540784 -152874458 - L2 LINE L2 0 3313 2938 494 227 133 0 chr6 29540796 29540946 -152874296 - L2 LINE L2 -1206 2108 1939 635 234 15 0 chr6 29541416 29541553 -152873689 + MIR SINE MIR 102 240 -22 487 302 90 19 chr6 29541644 29542021 -152873221 + L1MC/D LINE L1 4645 5048 -1098 542 261 105 4 chr6 29542150 29542388 -152872854 + L1MC/D LINE L1 5254 5515 -2293 235 243 27 40 chr6 29542388 29542462 -152872780 - MER76 LTR ERV -3 685 613 794 51 0 0 chr6 29542462 29542560 -152872682 + L1P LINE L1 1 98 -6048 * 5004 74 178 10 chr6 29542529 29543325 -152871917 + L1P LINE L1 580 1509 -4637 * 12978 23 0 2 chr6 29543320 29544855 -152870387 - L1P LINE L1 -802 5344 3813 925 344 65 38 chr6 29545157 29546132 -152869110 - ERVL LTR ERVL -1290 4195 3195 349 261 50 1 chr6 29546169 29546264 -152868978 - ERVL LTR ERVL -1901 3095 3010 306 312 9 46 chr6 29546264 29546373 -152868869 - LTR16A LTR ERVL -143 307 203 783 320 53 14 chr6 29546673 29547062 -152868180 + MLT1H LTR MaLR 1 442 -107 1377 297 88 11 chr6 29547138 29547851 -152867391 + L1M4 LINE L1 3600 4367 -1779 283 301 66 22 chr6 29549377 29549513 -152865729 + MIR SINE MIR 58 199 -63 279 308 80 34 chr6 29550194 29550457 -152864785 - L1MC/D LINE L1 -515 5727 5453 1595 139 68 4 chr6 29552533 29552799 -152862443 - AluJb SINE Alu -1 311 29 318 188 130 0 chr6 29552799 29552868 -152862374 - AluJ/FLAM SINE Alu -224 78 1 2322 108 0 0 chr6 29553262 29553558 -152861684 - AluSx SINE Alu -14 298 3 27 81 0 0 chr6 29554510 29554572 -152860670 + AT_rich Low_complexity Low_complexity 1 62 0 344 274 59 67 chr6 29554608 29554878 -152860364 - L1MC4a LINE L1 -1755 6053 5786 435 324 21 7 chr6 29555460 29555605 -152859637 - MIR SINE MIR -98 164 18 1735 64 64 0 chr6 29555730 29555963 -152859279 + L1PB1 LINE L1 5904 6151 0 333 0 0 0 chr6 29557673 29557710 -152857532 + (CA)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr6 29558850 29558874 -152856368 + AT_rich Low_complexity Low_complexity 1 24 0 3751 138 44 11 chr6 29559000 29559654 -152855588 - L1MB3 LINE L1 0 6183 5508 531 165 21 0 chr6 29559904 29560001 -152855241 + FLAM_C SINE Alu 38 136 -7 451 339 71 51 chr6 29560229 29560448 -152854794 + L3 LINE CR1 1210 1440 -137 2187 121 0 10 chr6 29560448 29560761 -152854481 + AluSq SINE Alu 1 310 -3 451 339 71 51 chr6 29560761 29560895 -152854347 + L3 LINE CR1 1440 1570 -7 1571 252 50 8 chr6 29561103 29561654 -152853588 - L1MC4a LINE L1 -406 5772 5206 600 160 19 0 chr6 29561654 29561760 -152853482 - AluSg/x SINE Alu -7 302 195 288 203 16 0 chr6 29561772 29561836 -152853406 - L1MB7 LINE L1 -9 6175 6111 311 172 16 0 chr6 29561866 29561930 -152853312 - L1MB7 LINE L1 -9 6175 6111 887 205 0 6 chr6 29561930 29562101 -152853141 + AluJb SINE Alu 137 306 -6 4074 178 44 30 chr6 29562101 29562639 -152852603 - L1MB7 LINE L1 -63 6121 5592 2105 104 62 0 chr6 29562639 29562927 -152852315 - AluSx SINE Alu -6 306 1 4074 178 44 30 chr6 29562927 29564044 -152851198 - L1MB7 LINE L1 -592 5592 4442 341 256 8 34 chr6 29564140 29564257 -152850985 - L1M4 LINE L1 -6335 207 94 338 85 0 0 chr6 29564251 29564298 -152850944 + L1MC/D LINE L1 5196 5242 -904 * 288 0 0 0 chr6 29564731 29564763 -152850479 + (TG)n Simple_repeat Simple_repeat 2 33 0 1613 183 10 3 chr6 29564773 29565085 -152850157 + L1MC/D LINE L1 5255 5568 -2217 415 345 38 24 chr6 29565204 29565497 -152849745 - ERVL LTR ERVL -441 5323 5027 836 225 46 62 chr6 29565500 29565937 -152849305 - MLT1F LTR MaLR -5 537 94 2002 185 93 83 chr6 29565937 29566578 -152848664 - MER52A LTR ERV1 0 1755 586 1547 219 159 73 chr6 29566568 29567198 -152848044 - MER52A LTR ERV1 -406 1349 666 * 219 239 127 0 chr6 29567421 29567492 -152847750 + L2 LINE L2 3150 3229 -43 8434 157 28 32 chr6 29568651 29570367 -152844875 + L1MA6 LINE L1 3602 5309 -857 3892 142 42 32 chr6 29570385 29570597 -152844645 + L1MA6 LINE L1 5383 5592 -708 308 93 0 19 chr6 29570597 29570651 -152844591 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 3892 142 42 32 chr6 29570651 29571179 -152844063 + L1MA6 LINE L1 5592 6130 -170 939 103 21 77 chr6 29571238 29571333 -152843909 + L1MA6 LINE L1 6115 6195 -105 2209 94 10 7 chr6 29571333 29571630 -152843612 - AluSg SINE Alu -12 298 1 939 103 21 77 chr6 29571630 29571728 -152843514 + L1MA6 LINE L1 6195 6297 -3 38 68 0 0 chr6 29571890 29571963 -152843279 + AT_rich Low_complexity Low_complexity 1 73 0 21 57 0 0 chr6 29571975 29572010 -152843232 + AT_rich Low_complexity Low_complexity 1 35 0 516 105 0 0 chr6 29572064 29572140 -152843102 + (CA)n Simple_repeat Simple_repeat 2 77 0 621 322 68 11 chr6 29572164 29572617 -152842625 - L1MC/D LINE L1 -2011 5797 5319 2284 91 3 0 chr6 29572909 29573207 -152842035 - AluY SINE Alu -12 299 1 30 77 0 0 chr6 29573586 29573651 -152841591 + AT_rich Low_complexity Low_complexity 1 65 0 525 329 74 55 chr6 29575230 29575660 -152839582 + L3 LINE CR1 832 1278 -299 1675 151 0 47 chr6 29575660 29575983 -152839259 + AluJb SINE Alu 1 309 0 525 329 74 55 chr6 29575983 29576131 -152839111 + L3 LINE CR1 1278 1422 -155 1576 180 56 28 chr6 29577482 29577876 -152837366 - LTR37A LTR ERV1 -18 408 4 245 247 62 96 chr6 29578340 29578486 -152836756 + L2 LINE L2 3151 3291 -22 1908 137 11 3 chr6 29580701 29580986 -152834256 - AluJb SINE Alu -23 289 3 1930 148 0 3 chr6 29581932 29582222 -152833020 - AluSq SINE Alu -24 289 1 249 327 46 14 chr6 29582412 29582580 -152832662 + MIR SINE MIR 6 176 -66 313 289 72 11 chr6 29584241 29584421 -152830821 + L1ME3A LINE L1 5767 5957 -213 953 307 87 50 chr6 29584663 29585399 -152829843 + HAL1 LINE L1 123 885 -1622 801 251 191 12 chr6 29585710 29586227 -152829015 + L1ME LINE L1 4424 5033 -1113 955 275 36 75 chr6 29586231 29586803 -152828439 - MLT1G LTR MaLR 0 590 71 965 251 44 19 chr6 29586850 29587376 -152827866 + L1ME LINE L1 5078 5610 -554 238 207 0 17 chr6 29587376 29587434 -152827808 - MLT1G LTR MaLR 0 590 534 922 133 8 0 chr6 29587460 29587588 -152827654 - FLAM_C SINE Alu -14 129 1 236 266 84 56 chr6 29587602 29587745 -152827497 - MLT1G LTR MaLR -77 478 332 340 194 11 65 chr6 29587972 29588065 -152827177 + L1ME LINE L1 5603 5690 -474 1407 234 172 0 chr6 29588074 29588493 -152826749 - MER110 LTR ERV1 0 491 1 402 259 202 6 chr6 29589206 29589386 -152825856 - MIR SINE MIR -33 229 18 1539 193 21 26 chr6 29589761 29590124 -152825118 - MLT1A1 LTR MaLR -1 364 1 351 345 81 8 chr6 29590126 29590372 -152824870 - L2 LINE L2 -590 2724 2461 2149 124 0 16 chr6 29590411 29590717 -152824525 + AluSq SINE Alu 1 301 -12 518 158 55 62 chr6 29591507 29591653 -152823589 - L1MC1 LINE L1 0 6333 6189 * 5111 177 25 10 chr6 29591648 29592633 -152822609 - L1MC1 LINE L1 -1 6332 5328 2125 118 17 0 chr6 29592633 29592921 -152822321 - AluSx SINE Alu -17 295 3 5111 177 25 10 chr6 29592921 29592993 -152822249 - L1MC1 LINE L1 -1005 5328 5259 2299 116 31 0 chr6 29593401 29593728 -152821514 + MER1B DNA MER1_type 1 337 0 1415 209 11 27 chr6 29594713 29595095 -152820147 - MLT1A1 LTR MaLR -2 363 1 626 181 116 4 chr6 29595179 29595411 -152819831 + L1MEc LINE L1 2010 2267 -4129 * 2651 240 104 35 chr6 29595394 29595464 -152819778 + L1MEc LINE L1 3091 3155 -3060 2081 149 0 0 chr6 29595464 29595773 -152819469 + AluSx SINE Alu 1 309 -3 2651 240 104 35 chr6 29595773 29596915 -152818327 + L1MEc LINE L1 3155 4386 -1829 2026 153 0 0 chr6 29596926 29597221 -152818021 + AluSx SINE Alu 1 295 -17 232 272 29 29 chr6 29597259 29597362 -152817880 - MLT1H LTR MaLR -381 168 66 240 30 0 0 chr6 29597465 29597498 -152817744 + L1MA3 LINE L1 6250 6282 -23 4167 110 96 32 chr6 29597498 29598236 -152817006 - LTR1 LTR ERV1 0 785 1 2309 142 183 37 chr6 29599688 29600223 -152815019 + LTR18B LTR ERVL 2 614 0 1354 201 0 0 chr6 29600244 29600517 -152814725 + HERVL18 LTR ERVL 19 291 -5756 680 176 8 0 chr6 29600547 29600672 -152814570 + HERVL18 LTR ERVL 541 666 -5381 1029 205 3 67 chr6 29600700 29601084 -152814158 + HERVL18 LTR ERVL 1388 1810 -4237 582 178 17 9 chr6 29601083 29601304 -152813938 + HERVL18 LTR ERVL 2119 2450 -3597 * 3471 162 53 90 chr6 29601305 29602102 -152813140 + HERVL18 LTR ERVL 2720 3486 -2561 2265 135 191 41 chr6 29602232 29602766 -152812476 + LTR18B LTR ERVL 1 614 0 1346 248 39 14 chr6 29602775 29603206 -152812036 - MER41E LTR ERV1 -48 464 23 380 188 0 62 chr6 29603499 29603595 -152811647 + LTR38B LTR ERV1 1 90 -520 4658 102 23 12 chr6 29604014 29604697 -152810545 + LTR8 LTR ERV1 1 691 0 1204 249 75 27 chr6 29605169 29605610 -152809632 - MLT1C LTR MaLR 0 467 6 1478 247 52 30 chr6 29605618 29605983 -152809259 + L1M4 LINE L1 3371 3753 -2393 2227 93 0 32 chr6 29605983 29606294 -152808948 + AluSc SINE Alu 9 309 0 1478 247 52 30 chr6 29606294 29606467 -152808775 + L1M4 LINE L1 3753 3921 -2225 958 105 0 0 chr6 29606468 29606592 -152808650 - AluSp/q SINE Alu -17 296 173 1055 180 5 0 chr6 29606592 29606814 -152808428 + L1MC3 LINE L1 7555 7777 -8 1964 135 7 20 chr6 29606855 29607152 -152808090 - AluSx SINE Alu -19 293 1 305 270 102 35 chr6 29607359 29607415 -152807827 - L1M4 LINE L1 -1739 4407 4356 5002 170 39 10 chr6 29607415 29608291 -152806951 + MER54A LTR ERVL 1 901 0 305 270 102 35 chr6 29608291 29608490 -152806752 - L1M4 LINE L1 -1790 4356 4140 2200 131 0 0 chr6 29608637 29608942 -152806300 - AluSx SINE Alu -7 305 1 442 342 26 4 chr6 29609411 29609639 -152805603 - HERVL LTR ERVL -1857 3797 3565 318 111 0 37 chr6 29609687 29609741 -152805501 - HERVL LTR ERVL -2106 2890 2839 2105 326 29 33 chr6 29612107 29612889 -152802353 - HERVL LTR ERVL -2128 2868 2090 1625 211 48 81 chr6 29612889 29613411 -152801831 + MLT1D LTR MaLR 1 505 0 2105 326 29 33 chr6 29613411 29613784 -152801458 - HERVL LTR ERVL -2906 2090 1717 581 183 40 0 chr6 29613829 29613955 -152801287 + L1MC4 LINE L1 6822 6952 -1090 573 157 25 0 chr6 29613952 29614073 -152801169 + L1MD3 LINE L1 7870 7993 -2 * 1920 186 230 24 chr6 29614075 29614178 -152801064 + L1MC4 LINE L1 6939 7019 -1023 267 31 0 0 chr6 29614178 29614210 -152801032 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 1920 186 230 24 chr6 29614210 29614744 -152800498 + L1MC4 LINE L1 7019 7708 -334 974 214 34 0 chr6 29614744 29614950 -152800292 + U3 snRNA snRNA 1 213 -4 180 0 0 0 chr6 29614976 29614996 -152800246 + (CAA)n Simple_repeat Simple_repeat 2 21 0 960 121 15 0 chr6 29615030 29615162 -152800080 + AluJb SINE Alu 1 134 -178 22 56 0 0 chr6 29615165 29615201 -152800041 + AT_rich Low_complexity Low_complexity 1 36 0 381 226 75 9 chr6 29615203 29615412 -152799830 + L1MC4 LINE L1 7724 8029 -13 29 0 0 0 chr6 29617215 29617244 -152797998 + AT_rich Low_complexity Low_complexity 1 29 0 318 26 0 0 chr6 29617281 29617320 -152797922 + (CA)n Simple_repeat Simple_repeat 2 40 0 238 394 71 26 chr6 29617646 29617872 -152797370 + L2 LINE L2 2586 2821 -493 363 402 16 35 chr6 29617974 29618230 -152797012 + L2 LINE L2 2997 3247 -25 259 294 122 42 chr6 29618721 29618935 -152796307 - MIR SINE MIR -2 260 30 35 0 0 0 chr6 29618952 29618987 -152796255 + AT_rich Low_complexity Low_complexity 1 35 0 449 304 120 0 chr6 29619375 29619559 -152795683 - MIR SINE MIR -49 213 8 261 300 67 17 chr6 29619592 29619712 -152795530 - L2 LINE L2 -1007 2307 2182 42692 35 1 1 chr6 29619934 29626089 -152789153 + L1PA3 LINE L1 1 6152 -3 29 28 0 0 chr6 29626089 29626125 -152789117 + AT_rich Low_complexity Low_complexity 1 36 0 515 311 77 0 chr6 29626138 29626334 -152788908 - MIR SINE MIR -3 259 49 2381 81 0 13 chr6 29626560 29626858 -152788384 - AluSq SINE Alu -19 294 1 24 77 0 0 chr6 29626911 29626963 -152788279 + AT_rich Low_complexity Low_complexity 1 52 0 12930 113 84 37 chr6 29627581 29628100 -152787142 + Tigger1 DNA MER2_type 1 494 -1924 2248 45 38 0 chr6 29628100 29628388 -152786854 + L1PA4 LINE L1 5854 6152 -3 12930 113 84 37 chr6 29628388 29630176 -152785066 + Tigger1 DNA MER2_type 494 2418 0 1194 153 5 0 chr6 29630178 29630367 -152784875 + Tigger7 DNA MER2_type 1 190 -2297 354 281 241 5 chr6 29630603 29630802 -152784440 + MIR SINE MIR 10 255 -7 354 288 80 8 chr6 29630840 29630965 -152784277 + L2 LINE L2 3179 3312 -1 21 0 0 0 chr6 29631239 29631260 -152783982 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 29631938 29631970 -152783272 + AT_rich Low_complexity Low_complexity 1 32 0 542 284 168 17 chr6 29632569 29632914 -152782328 + L1ME4a LINE L1 5724 6120 -1 186 209 0 0 chr6 29634577 29634620 -152780622 + (TA)n Simple_repeat Simple_repeat 1 43 0 2361 39 0 3 chr6 29635386 29635672 -152779570 + L1PA5 LINE L1 5854 6138 -16 1071 182 0 11 chr6 29635689 29635876 -152779366 + AluJb SINE Alu 120 304 -8 369 122 8 0 chr6 29635990 29636078 -152779164 - AluJ/FRAM SINE Alu 0 309 230 208 277 0 0 chr6 29636386 29636433 -152778809 + L2 LINE L2 3267 3313 0 33 73 0 0 chr6 29636441 29636509 -152778733 + AT_rich Low_complexity Low_complexity 1 68 0 253 286 41 0 chr6 29636870 29636968 -152778274 - HAL1 LINE L1 -1027 1480 1379 2112 72 0 0 chr6 29637081 29637343 -152777899 - AluY SINE Alu -17 294 33 301 272 91 78 chr6 29637344 29637587 -152777655 - L1MEd LINE L1 -4956 1163 918 1533 131 0 13 chr6 29638356 29638592 -152776650 - AluJb SINE Alu -17 295 63 188 324 54 0 chr6 29639601 29639675 -152775567 - L2 LINE L2 -45 3227 3150 394 352 114 26 chr6 29640208 29640899 -152774343 - L2 LINE L2 -751 2563 1812 2178 92 0 0 chr6 29641377 29641695 -152773547 - AluSx SINE Alu 0 318 1 576 221 25 13 chr6 29643045 29643203 -152772039 + MLT1C LTR MaLR 1 160 -307 753 181 7 0 chr6 29643214 29643352 -152771890 + FRAM SINE Alu 21 159 -17 886 161 6 6 chr6 29643359 29643539 -152771703 + GA-rich Low_complexity Low_complexity 1 180 0 315 248 17 8 chr6 29643514 29643631 -152771611 + A-rich Low_complexity Low_complexity 4 121 0 * 642 184 0 0 chr6 29643644 29643769 -152771473 + GA-rich Low_complexity Low_complexity 4 128 0 1065 244 15 7 chr6 29643775 29644045 -152771197 + MLT1C LTR MaLR 196 467 0 181 341 106 0 chr6 29644613 29644698 -152770544 - MIR SINE MIR -78 130 37 184 222 74 19 chr6 29644918 29644972 -152770270 - L2 LINE L2 -1 3312 3256 406 303 136 13 chr6 29645265 29645420 -152769822 + MIR SINE MIR 52 225 -37 397 196 58 116 chr6 29646628 29646766 -152768476 - L2 LINE L2 -8 3305 3176 961 231 73 15 chr6 29646788 29647117 -152768125 + L1ME3A LINE L1 5772 6119 -51 391 336 53 45 chr6 29648974 29649349 -152765893 + L1ME LINE L1 548 925 -5145 1196 111 0 0 chr6 29649589 29649742 -152765500 + AluSg/x SINE Alu 142 294 -18 2196 119 0 0 chr6 29649743 29650036 -152765206 + AluSx SINE Alu 3 295 -17 740 137 23 30 chr6 29652076 29652207 -152763035 + AluJo SINE Alu 117 246 -66 265 143 68 7 chr6 29653746 29653893 -152761349 + (TA)n Simple_repeat Simple_repeat 1 156 0 214 114 95 13 chr6 29653907 29654065 -152761177 + (TA)n Simple_repeat Simple_repeat 2 172 0 379 123 103 7 chr6 29654532 29654687 -152760555 + (TA)n Simple_repeat Simple_repeat 2 171 0 344 101 94 28 chr6 29654705 29655024 -152760218 + (TA)n Simple_repeat Simple_repeat 1 340 0 271 337 114 40 chr6 29656398 29656600 -152758642 - MIR SINE MIR -39 223 7 2370 68 0 0 chr6 29657024 29657329 -152757913 + AluY SINE Alu 1 305 0 1966 139 36 7 chr6 29657903 29658204 -152757038 - AluJb SINE Alu -2 310 1 204 229 21 57 chr6 29658431 29658571 -152756671 + A-rich Low_complexity Low_complexity 5 139 0 28 29 0 0 chr6 29660253 29660288 -152754954 + AT_rich Low_complexity Low_complexity 1 35 0 2159 107 0 28 chr6 29660693 29661011 -152754231 - AluSg1 SINE Alu 0 309 1 879 237 88 19 chr6 29661529 29661858 -152753384 + L1ME3A LINE L1 5535 5889 -281 1564 190 11 4 chr6 29661952 29662231 -152753011 + AluJb SINE Alu 14 294 -18 255 133 0 0 chr6 29662231 29662276 -152752966 + (GGGGA)n Simple_repeat Simple_repeat 2 46 0 2427 55 16 10 chr6 29662549 29662856 -152752386 + AluY SINE Alu 1 309 -2 1942 120 4 0 chr6 29662962 29663228 -152752014 - AluSx SINE Alu -45 267 1 257 398 19 12 chr6 29663518 29663679 -152751563 + MIR SINE MIR 20 181 -81 782 236 17 11 chr6 29663821 29663999 -152751243 - MLT1C LTR MaLR -102 365 187 2038 136 3 0 chr6 29664035 29664329 -152750913 + AluJb SINE Alu 1 295 -17 2176 111 3 3 chr6 29665836 29666134 -152749108 - AluSx SINE Alu -14 298 1 410 165 51 0 chr6 29666791 29666870 -152748372 + MSTA LTR MaLR 3 85 -343 1279 161 16 80 chr6 29666972 29667283 -152747959 + L1MDa LINE L1 72 362 -6178 224 289 0 0 chr6 29667741 29667793 -152747449 + L2 LINE L2 3262 3313 0 351 273 133 60 chr6 29670133 29670163 -152745079 - L2 LINE L2 0 3313 3287 1535 128 0 4 chr6 29670163 29670390 -152744852 - AluSx SINE Alu -86 226 1 351 273 133 60 chr6 29670390 29670608 -152744634 - L2 LINE L2 -26 3287 3047 1268 99 6 0 chr6 29670721 29670882 -152744360 + AluSx SINE Alu 1 162 -150 241 358 77 23 chr6 29670885 29671071 -152744171 - L2 LINE L2 -491 2823 2622 2145 131 3 0 chr6 29671071 29671377 -152743865 + AluSx SINE Alu 5 311 -1 241 358 77 23 chr6 29671377 29671411 -152743831 - L2 LINE L2 -692 2622 2591 184 397 68 0 chr6 29671423 29671496 -152743746 - MIR SINE MIR -172 90 13 2860 13 0 0 chr6 29673411 29673724 -152741518 + AluYb8 SINE Alu 1 313 -5 185 362 0 0 chr6 29674220 29674278 -152740964 - L2 LINE L2 -208 3064 3007 455 305 82 68 chr6 29674935 29675302 -152739940 - LTR67 LTR ERVL -82 475 104 510 249 5 79 chr6 29675331 29675520 -152739722 + LTR16A LTR ERVL 18 192 -258 278 232 14 0 chr6 29676876 29676945 -152738297 + HERVL18 LTR ERVL 5683 5752 -295 * 454 223 0 0 chr6 29676885 29676979 -152738263 + PABL_B-int LTR ERV1 6579 6672 -450 2655 126 22 2 chr6 29677350 29677764 -152737478 + LTR42 LTR ERVL 41 462 -33 1484 161 4 40 chr6 29678172 29678446 -152736796 - AluJb SINE Alu -48 264 1 1699 163 83 0 chr6 29678481 29678806 -152736436 + MER65A LTR ERV1 47 398 -47 1784 97 0 0 chr6 29678807 29679033 -152736209 - AluSg/x SINE Alu -14 296 71 2983 104 36 20 chr6 29679033 29679531 -152735711 + LTR10A LTR ERV1 1 506 -103 2102 85 3 53 chr6 29679550 29679869 -152735373 - AluY SINE Alu -8 303 1 2964 80 122 11 chr6 29681482 29681942 -152733300 - MER9 LTR ERVK 0 511 1 2993 143 50 4 chr6 29682423 29682946 -152732296 + LTR10A LTR ERV1 1 547 -62 2196 105 0 26 chr6 29683547 29683853 -152731389 + AluSg SINE Alu 1 298 -12 25 31 0 0 chr6 29684394 29684426 -152730816 + AT_rich Low_complexity Low_complexity 1 32 0 208 301 12 48 chr6 29684447 29684530 -152730712 + L2 LINE L2 3193 3272 0 2264 91 37 0 chr6 29685615 29685913 -152729329 + AluY SINE Alu 1 309 -2 224 30 30 0 chr6 29686403 29686436 -152728806 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2230 92 0 0 chr6 29686439 29686720 -152728522 - AluSg SINE Alu -29 281 1 27 0 0 0 chr6 29688692 29688719 -152726523 + AT_rich Low_complexity Low_complexity 1 27 0 540 242 53 0 chr6 29689889 29690021 -152725221 - MIR SINE MIR -106 156 18 266 293 41 16 chr6 29691185 29691308 -152723934 - MER65B LTR ERV1 -403 128 3 1289 180 64 97 chr6 29693268 29693641 -152721601 + MLT1A2 LTR MaLR 1 361 -13 3062 135 14 0 chr6 29694518 29694940 -152720302 + MSTA LTR MaLR 1 428 0 345 333 14 14 chr6 29695358 29695499 -152719743 - MIR SINE MIR -44 218 78 808 221 96 66 chr6 29695621 29696156 -152719086 + LTR48B LTR ERV1 1 542 0 1700 231 38 58 chr6 29696797 29697243 -152717999 + MER45B DNA AcHobo 1 437 -603 2455 65 3 3 chr6 29697250 29697558 -152717684 + AluY SINE Alu 1 308 -3 962 122 86 46 chr6 29697566 29697763 -152717479 + LTR49-int LTR ERV1 2919 3123 -3208 1219 150 37 61 chr6 29697792 29698038 -152717204 + LTR49-int LTR ERV1 3109 3348 -2983 678 191 16 24 chr6 29698085 29698211 -152717031 + LTR49-int LTR ERV1 3353 3477 -2854 429 180 0 0 chr6 29698230 29698291 -152716951 + AluJ/FLAM SINE Alu 7 67 -245 2216 128 6 12 chr6 29698293 29698630 -152716612 + L1P3 LINE L1 786 1120 -4755 833 120 0 24 chr6 29698627 29698752 -152716490 - L1P3 LINE L1 -6306 155 34 * 3469 222 16 44 chr6 29698737 29699709 -152715533 + L1P3 LINE L1 1169 2113 -4348 1818 124 18 0 chr6 29699695 29699969 -152715273 - L1P LINE L1 -3261 2885 2607 * 12030 100 14 5 chr6 29699971 29702414 -152712828 + L1PA8 LINE L1 3705 6159 -13 5476 126 79 69 chr6 29702500 29703696 -152711546 + LTR49-int LTR ERV1 3712 4918 -1413 228 190 51 51 chr6 29704806 29704885 -152710357 - MIR SINE MIR -4 258 180 753 186 52 6 chr6 29704920 29705092 -152710150 + L1MD3 LINE L1 7806 7985 -10 1395 171 57 112 chr6 29705321 29705620 -152709622 + MER110A LTR ERV1 39 306 -162 7006 21 1 0 chr6 29705620 29706375 -152708867 + L1PA3 LINE L1 5396 6151 -4 1395 171 57 112 chr6 29706375 29706530 -152708712 + MER110A LTR ERV1 306 468 0 2370 95 0 7 chr6 29707266 29707572 -152707670 - AluSx SINE Alu -8 304 1 809 297 153 9 chr6 29707717 29708140 -152707102 - L2 LINE L2 0 3272 2782 607 128 0 12 chr6 29708153 29708239 -152707003 + FLAM_A SINE Alu 31 115 -27 344 274 9 53 chr6 29708764 29708877 -152706365 + L2 LINE L2 2967 3074 -198 1930 119 72 44 chr6 29709170 29709530 -152705712 + THE1C LTR MaLR 6 375 0 46 54 0 0 chr6 29710187 29710261 -152704981 + AT_rich Low_complexity Low_complexity 1 74 0 222 256 0 0 chr6 29710382 29710421 -152704821 - MIR SINE MIR -207 55 17 274 338 66 29 chr6 29710527 29710663 -152704579 - MER5B DNA MER1_type -33 145 5 467 282 109 47 chr6 29710781 29711486 -152703756 - L1MEc LINE L1 -770 1806 1008 228 67 0 0 chr6 29712159 29712189 -152703053 + (T)n Simple_repeat Simple_repeat 1 30 0 2314 153 17 42 chr6 29712534 29712938 -152702304 + MSTD LTR MaLR 3 396 0 2021 134 16 0 chr6 29714494 29714801 -152700441 + AluSx SINE Alu 1 312 0 1573 188 3 63 chr6 29715732 29716051 -152699191 + AluJo SINE Alu 1 300 -12 676 256 57 28 chr6 29716544 29716755 -152698487 + Charlie8 DNA MER1_type 2 218 -2199 21 0 0 0 chr6 29717201 29717222 -152698020 + AT_rich Low_complexity Low_complexity 1 21 0 301 261 14 0 chr6 29718182 29718251 -152696991 - MIR SINE MIR 0 262 193 2230 111 0 0 chr6 29718378 29718675 -152696567 + AluSc SINE Alu 1 297 -12 36 40 0 0 chr6 29718735 29718785 -152696457 + AT_rich Low_complexity Low_complexity 1 50 0 490 313 58 26 chr6 29719103 29719416 -152695826 - L1M4 LINE L1 -2839 3307 2985 2366 88 0 3 chr6 29720632 29720928 -152694314 - AluSc SINE Alu -14 295 1 255 219 125 55 chr6 29721117 29721245 -152693997 - L1ME LINE L1 -426 5695 5559 1599 155 115 57 chr6 29721398 29721823 -152693419 - LTR7 LTR ERV1 0 450 1 321 286 41 34 chr6 29721838 29721985 -152693257 - L1ME LINE L1 -808 5338 5191 448 241 0 75 chr6 29722100 29722233 -152693009 + L2 LINE L2 2622 2744 -570 971 182 0 27 chr6 29722233 29722420 -152692822 + FRAM SINE Alu 1 176 0 900 300 101 14 chr6 29722433 29722828 -152692414 + L2 LINE L2 2746 3213 -100 321 26 0 0 chr6 29722828 29722866 -152692376 + (CA)n Simple_repeat Simple_repeat 1 38 0 900 300 101 14 chr6 29722866 29722963 -152692279 + L2 LINE L2 3213 3300 -13 714 279 150 26 chr6 29722990 29723442 -152691800 + L1MC4a LINE L1 5433 5940 -1868 270 333 31 0 chr6 29724188 29724284 -152690958 - MIR SINE MIR 0 262 164 252 0 0 0 chr6 29724392 29724420 -152690822 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 577 279 62 75 chr6 29724978 29725380 -152689862 + L3 LINE CR1 1102 1498 -79 1156 153 190 4 chr6 29725381 29725660 -152689582 - MER33 DNA MER1_type -1 323 1 240 234 31 0 chr6 29725670 29725734 -152689508 + L3 LINE CR1 1509 1574 -3 1742 197 56 19 chr6 29726415 29726791 -152688451 - MLT1B LTR MaLR 0 390 1 799 183 0 0 chr6 29727310 29727455 -152687787 - FLAM_C SINE Alu 0 146 2 282 342 36 27 chr6 29727470 29727581 -152687661 - L2 LINE L2 0 3272 3161 347 259 12 0 chr6 29727832 29727913 -152687329 + MER5A DNA MER1_type 108 189 0 243 250 0 75 chr6 29729445 29729525 -152685717 + MIR SINE MIR 82 155 -107 1197 176 9 27 chr6 29729728 29729950 -152685292 + AluJo SINE Alu 81 298 -14 494 125 164 29 chr6 29730136 29730230 -152685012 - MER3 DNA MER1_type -13 149 38 1563 130 134 4 chr6 29730230 29730492 -152684750 - AluSx SINE Alu -16 296 1 1489 166 20 71 chr6 29730814 29731110 -152684132 - AluJo SINE Alu -31 281 1 1334 146 127 8 chr6 29731644 29731897 -152683345 - MER1B DNA MER1_type -1 338 56 201 254 18 18 chr6 29731931 29731986 -152683256 - L2 LINE L2 -3 3310 3256 206 118 0 0 chr6 29732467 29732501 -152682741 + (A)n Simple_repeat Simple_repeat 1 34 0 1247 108 29 117 chr6 29733250 29733490 -152681752 - MER20 DNA MER1_type 0 219 1 2181 90 23 19 chr6 29733568 29733878 -152681364 + AluSp SINE Alu 1 311 -2 361 183 247 11 chr6 29734158 29734251 -152680991 + MER3 DNA MER1_type 38 152 -57 * 1211 162 141 18 chr6 29734246 29734586 -152680656 + MER3 DNA MER1_type 2232 2613 0 818 319 161 10 chr6 29734616 29735026 -152680216 - L2 LINE L2 -341 2973 2502 321 218 26 0 chr6 29735068 29735146 -152680096 - MER116 DNA Mariner 0 80 1 902 228 44 5 chr6 29735432 29735638 -152679604 + MIR SINE MIR 21 234 -28 488 291 14 30 chr6 29736705 29736894 -152678348 + MIR SINE MIR 21 205 -57 1068 207 126 59 chr6 29737824 29738261 -152676981 - LTR40a LTR ERVL -12 507 1 27 81 0 0 chr6 29738305 29738367 -152676875 + AT_rich Low_complexity Low_complexity 1 62 0 744 181 104 23 chr6 29738662 29738984 -152676258 - L1M4 LINE L1 -704 5474 5128 1975 141 10 0 chr6 29739174 29739473 -152675769 - AluJb SINE Alu -10 302 1 1535 119 82 101 chr6 29739977 29740295 -152674947 + AluJo SINE Alu 1 312 0 559 145 0 0 chr6 29742670 29742753 -152672489 + 7SLRNA srpRNA srpRNA 217 299 -21 24 0 0 0 chr6 29742753 29742777 -152672465 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 29742997 29743021 -152672221 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr6 29743030 29743070 -152672172 + AT_rich Low_complexity Low_complexity 1 40 0 2517 47 0 0 chr6 29743952 29744248 -152670994 + AluY SINE Alu 1 296 -15 868 179 80 47 chr6 29744271 29744483 -152670759 - MER20 DNA MER1_type 0 219 1 933 240 67 63 chr6 29744701 29745147 -152670095 - MLT1C LTR MaLR -14 453 6 2731 209 144 25 chr6 29745632 29746784 -152668458 + L1ME LINE L1 4472 5770 -396 297 173 0 0 chr6 29746799 29746851 -152668391 - L1ME1 LINE L1 -232 5934 5883 197 363 89 17 chr6 29747167 29747346 -152667896 - L2 LINE L2 -2054 1260 1069 315 361 69 0 chr6 29748189 29748333 -152666909 - MIR SINE MIR -74 188 35 21 57 0 0 chr6 29748984 29749019 -152666223 + AT_rich Low_complexity Low_complexity 1 35 0 634 37 0 0 chr6 29749019 29749101 -152666141 - L1PA2 LINE L1 0 6155 6074 2595 200 92 56 chr6 29749159 29749976 -152665266 - L1MC4 LINE L1 -180 7862 7003 2115 137 3 0 chr6 29749976 29750282 -152664960 - AluSx SINE Alu -5 307 1 2595 200 92 56 chr6 29750282 29750426 -152664816 - L1MC4 LINE L1 -1039 7003 6866 292 159 48 0 chr6 29754503 29754566 -152660676 - MARNA DNA Mariner -23 563 498 256 158 0 0 chr6 29755438 29755476 -152659766 - 5S rRNA rRNA -83 38 1 731 232 168 5 chr6 29756122 29756195 -152659047 - MIR SINE MIR 0 262 202 2590 71 22 25 chr6 29756195 29756560 -152658682 - THE1B LTR MaLR 0 364 1 731 232 168 5 chr6 29756560 29756706 -152658536 - MIR SINE MIR -60 202 7 457 291 61 102 chr6 29758125 29758634 -152656608 + L2 LINE L2 2817 3304 -9 772 144 21 93 chr6 29758955 29759098 -152656144 + MER20 DNA MER1_type 36 163 -56 180 111 0 0 chr6 29759098 29759125 -152656117 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 772 144 21 93 chr6 29759125 29759175 -152656067 + MER20 DNA MER1_type 163 215 -4 1233 163 143 43 chr6 29759854 29760112 -152655130 + AluJo SINE Alu 3 286 -26 492 181 254 0 chr6 29762133 29762271 -152652971 + MIR SINE MIR 69 241 -21 2400 72 0 0 chr6 29762925 29763216 -152652026 - AluSg SINE Alu -19 291 1 314 301 75 26 chr6 29763231 29763497 -152651745 - L1M4 LINE L1 -1066 5080 4802 188 360 170 7 chr6 29763730 29763883 -152651359 + MIR SINE MIR 35 212 -50 304 311 30 15 chr6 29764179 29764314 -152650928 + CT-rich Low_complexity Low_complexity 1 137 0 738 135 92 0 chr6 29764586 29764727 -152650515 - L1MC3 LINE L1 -363 7422 7269 22 35 0 0 chr6 29765222 29765251 -152649991 + AT_rich Low_complexity Low_complexity 1 29 0 1005 181 0 0 chr6 29765293 29765453 -152649789 - AluJb SINE Alu -5 307 148 191 282 154 0 chr6 29767383 29767461 -152647781 - L2 LINE L2 -932 2382 2293 1672 202 7 0 chr6 29767556 29767863 -152647379 - AluJo SINE Alu -3 309 1 631 199 76 6 chr6 29769351 29769522 -152645720 + LTR40c LTR ERVL 5 187 -278 2225 252 89 24 chr6 29769574 29770136 -152645106 - L1M4 LINE L1 -860 5286 4762 2454 226 79 12 chr6 29770136 29770781 -152644461 + MER76 LTR ERV 1 688 0 2225 252 89 24 chr6 29770781 29771350 -152643892 - L1M4 LINE L1 -1384 4762 4081 302 301 0 0 chr6 29771563 29771636 -152643606 - MER2 DNA MER2_type -1 344 272 201 74 0 0 chr6 29771647 29771674 -152643568 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 964 149 96 5 chr6 29771914 29772102 -152643140 - MER2 DNA MER2_type -139 206 2 559 267 0 14 chr6 29772107 29772253 -152642989 + MER82 DNA MER2_type 1 144 -509 731 169 23 0 chr6 29772338 29772468 -152642774 + FLAM_C SINE Alu 1 133 0 1399 82 0 0 chr6 29772691 29772862 -152642380 - AluSp SINE Alu -7 306 136 1278 178 55 4 chr6 29772968 29773243 -152641999 + MER82 DNA MER2_type 202 490 -163 1198 202 184 28 chr6 29773251 29773687 -152641555 - MLT1D LTR MaLR -1 504 1 335 284 63 0 chr6 29773988 29774115 -152641127 - L1ME3A LINE L1 -9 6161 6027 369 199 154 7 chr6 29774134 29774270 -152640972 - L1ME3A LINE L1 -203 5967 5812 1741 201 0 0 chr6 29774913 29775221 -152640021 - AluSx SINE Alu -4 308 1 252 0 0 0 chr6 29776000 29776028 -152639214 + (A)n Simple_repeat Simple_repeat 1 28 0 307 333 0 0 chr6 29776543 29776624 -152638618 + L2 LINE L2 3186 3266 -6 289 276 26 60 chr6 29776611 29776727 -152638515 + L3 LINE CR1 532 643 -934 * 302 293 77 58 chr6 29776922 29777130 -152638112 - L1ME3A LINE L1 -350 5820 5609 895 227 153 109 chr6 29777473 29777609 -152637633 - L2 LINE L2 -341 2973 2844 2179 132 7 0 chr6 29777609 29777919 -152637323 + AluSx SINE Alu 1 312 0 895 227 153 109 chr6 29777919 29778279 -152636963 - L2 LINE L2 -470 2844 2455 1628 164 14 38 chr6 29778283 29778576 -152636666 + AluJb SINE Alu 1 286 -26 235 201 90 118 chr6 29778609 29778753 -152636489 - L2 LINE L2 -855 2459 2320 1748 141 29 58 chr6 29778951 29779263 -152635979 - AluJb SINE Alu -9 303 1 2074 73 62 4 chr6 29780291 29780565 -152634677 + AluSc SINE Alu 1 290 -19 444 260 125 45 chr6 29780661 29781006 -152634236 + L1MEd LINE L1 955 1370 -4759 1908 152 31 0 chr6 29781006 29781295 -152633947 - AluJb SINE Alu -13 299 2 444 260 125 45 chr6 29781295 29781492 -152633750 + L1MEd LINE L1 1370 1550 -4579 443 246 8 39 chr6 29781524 29781639 -152633603 + L1MEc LINE L1 729 841 -5766 1442 226 56 86 chr6 29781639 29782160 -152633082 - MLT1D LTR MaLR 0 505 1 443 246 8 39 chr6 29782160 29782174 -152633068 + L1MEc LINE L1 841 854 -5753 868 174 0 128 chr6 29782196 29782242 -152633000 - MLT1A2 LTR MaLR -160 214 164 2636 58 0 0 chr6 29782242 29782553 -152632689 + AluY SINE Alu 1 311 0 868 174 0 128 chr6 29782553 29782748 -152632494 - MLT1A2 LTR MaLR -210 164 4 1782 169 248 6 chr6 29782752 29783272 -152631970 + L1MEc LINE L1 1249 1894 -4532 952 79 39 0 chr6 29783273 29783400 -152631842 + AluSp SINE Alu 1 132 -181 2255 95 7 0 chr6 29783403 29783708 -152631534 + AluY SINE Alu 2 308 -3 342 313 18 49 chr6 29783715 29783878 -152631364 - L1ME4a LINE L1 -95 6026 5869 254 262 105 38 chr6 29784001 29784211 -152631031 - L1MC5 LINE L1 -427 7534 7311 938 268 51 65 chr6 29784278 29785107 -152630135 - L1MC4 LINE L1 -672 7370 6536 783 309 148 31 chr6 29785437 29786235 -152629007 - L1MEc LINE L1 -3176 2970 2114 185 247 0 32 chr6 29786242 29786335 -152628907 + (CATATA)n Simple_repeat Simple_repeat 4 93 0 1534 235 108 16 chr6 29786421 29786864 -152628378 - MLT1E LTR MaLR 0 593 110 2236 171 87 42 chr6 29789375 29789817 -152625425 + MER63 DNA MER1_type 475 952 -109 962 149 40 7 chr6 29789819 29789967 -152625275 + AluJo/FRAM SINE Alu 137 289 -13 2236 171 87 42 chr6 29789967 29790082 -152625160 + MER63 DNA MER1_type 952 1060 -1 311 196 26 13 chr6 29790084 29790163 -152625079 - L1MC4 LINE L1 -330 5836 5759 * 2003 181 25 0 chr6 29790148 29790513 -152624729 - L1MD1 LINE L1 -273 6363 5990 194 0 39 0 chr6 29790513 29790539 -152624703 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1902 121 15 0 chr6 29790544 29790808 -152624434 - AluSx SINE Alu -44 268 1 1319 49 6 0 chr6 29790844 29791006 -152624236 + AluY SINE Alu 147 309 -2 1241 199 107 28 chr6 29791012 29791548 -152623694 - L1MD1 LINE L1 -650 5986 5417 954 198 0 17 chr6 29791557 29791729 -152623513 - AluJb SINE Alu -2 310 142 645 174 17 26 chr6 29791741 29791856 -152623386 - AluJo SINE Alu -101 211 98 1534 144 98 0 chr6 29791929 29792193 -152623049 + AluJo SINE Alu 1 290 -22 3242 206 64 50 chr6 29792208 29792319 -152622923 - L1MD1 LINE L1 -2661 3879 3771 1607 169 14 20 chr6 29792319 29792615 -152622627 + AluJo SINE Alu 3 296 -16 3242 206 64 50 chr6 29792615 29793644 -152621598 - L1MD1 LINE L1 -2769 3771 2757 2237 110 0 0 chr6 29793644 29793934 -152621308 - AluSx SINE Alu -22 290 1 2173 127 0 0 chr6 29793942 29794233 -152621009 - AluSx SINE Alu -21 291 1 3242 206 64 50 chr6 29794233 29794681 -152620561 - L1MD1 LINE L1 -3789 2751 2310 1386 182 93 4 chr6 29794681 29794852 -152620390 - AluJo SINE Alu -7 305 98 198 0 0 0 chr6 29794852 29794874 -152620368 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1386 182 93 4 chr6 29794874 29794982 -152620260 - AluJo SINE Alu -214 98 1 3242 206 64 50 chr6 29794982 29796911 -152618331 - L1MD1 LINE L1 -4230 2310 1 272 167 14 56 chr6 29797933 29798005 -152617237 + L2 LINE L2 2430 2498 -816 550 228 32 57 chr6 29798072 29798230 -152617012 - L2 LINE L2 -1 3312 3159 2635 127 30 48 chr6 29798322 29798756 -152616486 - MSTB LTR MaLR 0 426 1 254 250 136 80 chr6 29798764 29798940 -152616302 - MLT1J LTR MaLR -101 410 225 27 0 0 0 chr6 29798964 29798991 -152616251 + AT_rich Low_complexity Low_complexity 1 27 0 628 163 0 0 chr6 29798991 29799083 -152616159 - Tigger7 DNA MER2_type 0 2491 2400 * 3141 175 23 2 chr6 29799077 29799591 -152615651 - Tigger7 DNA MER2_type -1961 526 2 3900 161 14 3 chr6 29799594 29800252 -152614990 - L1MB2 LINE L1 -22 6149 5485 609 58 0 0 chr6 29800285 29800371 -152614871 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 180 111 0 0 chr6 29800527 29800554 -152614688 + (TGG)n Simple_repeat Simple_repeat 1 27 0 3745 226 21 16 chr6 29801851 29802210 -152613032 - MER21B LTR ERV1 -21 842 486 503 0 0 31 chr6 29802210 29802274 -152612968 + (TTATA)n Simple_repeat Simple_repeat 5 66 0 3745 226 21 16 chr6 29802274 29802683 -152612559 - MER21B LTR ERV1 -377 486 70 432 253 11 0 chr6 29802719 29802806 -152612436 - MER21B LTR ERV1 -757 106 19 1863 234 48 23 chr6 29802815 29803502 -152611740 + L1MEc LINE L1 1372 2082 -4314 1949 87 0 20 chr6 29803502 29803756 -152611486 + AluSc SINE Alu 54 302 -7 1863 234 48 23 chr6 29803756 29803826 -152611416 + L1MEc LINE L1 2082 2149 -4247 5264 147 53 17 chr6 29803834 29804709 -152610533 + L1MC1 LINE L1 5422 6327 -6 246 156 0 0 chr6 29804828 29804873 -152610369 + (CA)n Simple_repeat Simple_repeat 2 46 0 271 287 43 9 chr6 29807243 29807435 -152607807 + MIR SINE MIR 3 262 0 260 283 65 7 chr6 29807945 29808083 -152607159 - L1MC5 LINE L1 -51 7910 7765 184 385 44 7 chr6 29809108 29809243 -152605999 + L2 LINE L2 2337 2476 -838 606 200 9 9 chr6 29809243 29809353 -152605889 + MER81 DNA DNA 5 114 0 509 335 37 0 chr6 29809381 29809569 -152605673 + L2 LINE L2 2521 2715 -599 197 241 145 0 chr6 29809773 29809856 -152605386 + L2 LINE L2 1906 2000 -1314 2143 116 3 0 chr6 29810395 29810688 -152604554 + AluSx SINE Alu 1 294 -18 213 65 0 0 chr6 29811024 29811055 -152604187 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1769 135 10 17 chr6 29811058 29811347 -152603895 - AluJb SINE Alu -25 287 1 776 12 0 0 chr6 29812213 29812295 -152602947 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 284 202 64 92 chr6 29813163 29813272 -152601970 + L1MC4a LINE L1 5854 5959 -1849 261 282 94 8 chr6 29813320 29813437 -152601805 - L1MC/D LINE L1 -516 5648 5522 2081 129 0 3 chr6 29813798 29814121 -152601121 + AluSx SINE Alu 1 312 0 509 200 357 7 chr6 29814152 29814292 -152600950 + MER5A DNA MER1_type 1 189 0 503 219 92 0 chr6 29814813 29814932 -152600310 - LTR65 LTR ERV1 -506 163 34 183 42 0 0 chr6 29814951 29814975 -152600267 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 365 191 0 0 chr6 29815120 29815188 -152600054 - MER53 DNA DNA 0 189 122 351 0 0 0 chr6 29816041 29816080 -152599162 + (CA)n Simple_repeat Simple_repeat 1 39 0 202 172 0 35 chr6 29816722 29816780 -152598462 + T-rich Low_complexity Low_complexity 5 60 0 509 268 155 36 chr6 29818300 29818494 -152596748 + L1MC/D LINE L1 5600 5816 -1992 1688 156 0 66 chr6 29818627 29818947 -152596295 + AluSx SINE Alu 1 299 -13 966 223 93 40 chr6 29819079 29819379 -152595863 + MER46C DNA MER2_type 1 316 -22 5401 138 32 22 chr6 29819397 29820301 -152594941 - MER49 LTR ERV1 -8 915 3 582 262 97 0 chr6 29820313 29820550 -152594692 - L1MC5 LINE L1 -83 7878 7619 24 0 0 0 chr6 29820608 29820632 -152594610 + AT_rich Low_complexity Low_complexity 1 24 0 201 74 0 0 chr6 29820738 29820765 -152594477 + (A)n Simple_repeat Simple_repeat 1 27 0 551 322 34 0 chr6 29820832 29821037 -152594205 - HERVL LTR ERVL -1236 4418 4207 789 250 16 21 chr6 29821169 29821357 -152593885 - LTR39 LTR ERV1 0 783 597 1292 149 12 132 chr6 29821433 29821613 -152593629 - LTR39 LTR ERV1 -482 301 180 2982 6 0 0 chr6 29821613 29821931 -152593311 - AluYb8 SINE Alu 0 318 1 1292 149 12 132 chr6 29821931 29822092 -152593150 - LTR39 LTR ERV1 -603 180 1 460 202 65 65 chr6 29822095 29822263 -152592979 - HERVL LTR ERVL -1674 4090 3923 684 122 37 18 chr6 29822263 29822427 -152592815 + CT-rich Low_complexity Low_complexity 2 168 0 1446 117 57 45 chr6 29823401 29823665 -152591577 + AluJo SINE Alu 1 267 -45 338 202 0 11 chr6 29823760 29823849 -152591393 + GA-rich Low_complexity Low_complexity 3 90 0 237 298 58 94 chr6 29824975 29825166 -152590076 - MER5A DNA MER1_type 0 189 6 343 200 60 20 chr6 29825258 29825358 -152589884 + MIR SINE MIR 86 189 -73 338 272 49 103 chr6 29825691 29825827 -152589415 - MIR SINE MIR -79 183 58 875 213 24 12 chr6 29825827 29825991 -152589251 + FRAM SINE Alu 1 166 0 338 272 49 103 chr6 29825991 29826038 -152589204 - MIR SINE MIR -204 58 10 21 0 0 0 chr6 29826159 29826180 -152589062 + AT_rich Low_complexity Low_complexity 1 21 0 587 275 39 64 chr6 29827271 29827420 -152587822 + MIR SINE MIR 8 150 -112 1615 190 62 32 chr6 29827420 29827794 -152587448 - MLT1B LTR MaLR -4 386 2 587 275 39 64 chr6 29827794 29827877 -152587365 + MIR SINE MIR 150 234 -28 220 147 0 0 chr6 29828625 29828659 -152586583 - L2 LINE L2 -6 3307 3274 269 294 27 41 chr6 29828875 29829021 -152586221 - L1ME4a LINE L1 -43 6078 5935 2541 66 0 0 chr6 29829031 29829333 -152585909 - AluY SINE Alu -9 302 1 751 306 61 48 chr6 29829791 29830167 -152585075 - L2 LINE L2 -34 3279 2899 3481 146 11 30 chr6 29830186 29830642 -152584600 - MER44D DNA MER2_type -1883 604 105 1950 99 81 32 chr6 29830642 29830925 -152584317 + AluSg SINE Alu 2 298 -12 3481 146 11 30 chr6 29830925 29831028 -152584214 - MER44D DNA MER2_type -2382 105 1 2058 137 3 0 chr6 29831226 29831525 -152583717 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr6 29832574 29832599 -152582643 + AT_rich Low_complexity Low_complexity 1 25 0 276 288 18 45 chr6 29832873 29832984 -152582258 - MIR SINE MIR -66 196 89 473 204 62 0 chr6 29833003 29833116 -152582126 - L1MD3 LINE L1 -1 7994 7875 1499 168 45 17 chr6 29833423 29833714 -152581528 + AluJo SINE Alu 2 300 -12 3245 71 2 7 chr6 29834212 29834632 -152580610 - MER4E LTR ERV1 0 766 349 1064 214 106 101 chr6 29835137 29835581 -152579661 - LTR16A1 LTR ERVL -3 454 9 2257 149 87 21 chr6 29835681 29836173 -152579069 - Tigger3(Golem) DNA MER2_type -16 3013 94 725 313 94 3 chr6 29836663 29837005 -152578237 - L1M4 LINE L1 -1920 4226 3854 1775 123 115 7 chr6 29837095 29837364 -152577878 - AluSg1 SINE Alu -11 298 1 277 301 131 35 chr6 29837364 29837646 -152577596 - L1M4 LINE L1 -3569 2577 2269 2889 147 19 2 chr6 29837735 29838156 -152577086 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr6 29838203 29838224 -152577018 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 29838370 29838401 -152576841 + AT_rich Low_complexity Low_complexity 1 31 0 205 178 0 44 chr6 29838835 29838880 -152576362 + (TTA)n Simple_repeat Simple_repeat 1 43 0 500 45 0 15 chr6 29839148 29839214 -152576028 - L1PA15 LINE L1 -4 6161 6097 988 259 66 54 chr6 29839273 29839590 -152575652 - L2 LINE L2 -473 2841 2521 244 289 144 10 chr6 29839634 29839731 -152575511 + L2 LINE L2 3160 3269 -3 207 0 0 0 chr6 29841933 29841956 -152573286 + (CA)n Simple_repeat Simple_repeat 2 24 0 2174 136 0 0 chr6 29842831 29843141 -152572101 - AluSx SINE Alu -2 310 1 355 321 67 21 chr6 29845613 29845806 -152569436 + MIR3 SINE MIR 3 204 -4 250 191 21 0 chr6 29845879 29845926 -152569316 - L2 LINE L2 -16 3256 3209 1692 174 13 7 chr6 29847723 29848033 -152567209 + AluSx SINE Alu 1 312 0 579 238 101 5 chr6 29848428 29848617 -152566625 + L2 LINE L2 3106 3312 -1 248 241 92 11 chr6 29849066 29849153 -152566089 - MIR SINE MIR -21 241 148 2446 79 0 3 chr6 29849240 29849545 -152565697 - AluSp SINE Alu -9 304 1 433 242 20 0 chr6 29849560 29849659 -152565583 - MIR SINE MIR -155 107 7 381 256 23 23 chr6 29849735 29849868 -152565374 + MIR SINE MIR 124 256 -6 221 315 72 9 chr6 29849934 29850045 -152565197 - MIR SINE MIR -59 149 32 1879 224 75 13 chr6 29850169 29850647 -152564595 + Charlie4a DNA MER1_type 1 508 0 465 184 98 110 chr6 29852161 29852324 -152562918 + MIR SINE MIR 78 238 -24 577 197 33 25 chr6 29852749 29852871 -152562371 + MER5B DNA MER1_type 2 124 -54 1036 150 0 6 chr6 29852874 29853041 -152562201 - AluSx SINE Alu -5 307 142 689 105 0 0 chr6 29853041 29853127 -152562115 - AluSx SINE Alu -225 87 2 203 250 0 0 chr6 29853128 29853168 -152562074 + MER5B DNA MER1_type 132 171 -7 253 235 59 0 chr6 29853172 29853240 -152562002 + L1MC5 LINE L1 7372 7443 -518 3038 170 6 8 chr6 29853241 29853728 -152561514 - MER66B LTR ERV1 0 486 1 3821 119 17 0 chr6 29853728 29854265 -152560977 - MER66B-int LTR ERV1 0 6676 6131 2587 174 28 2 chr6 29854272 29854702 -152560540 - MER66-int LTR ERV1 -3892 2784 2344 2259 195 46 2 chr6 29854707 29855117 -152560125 - MER66-int LTR ERV1 -4514 2162 1735 344 240 39 10 chr6 29855121 29855225 -152560017 + L1MC4 LINE L1 7790 7896 -146 1581 184 3 32 chr6 29855316 29855632 -152559610 + AluJb SINE Alu 1 307 -5 1242 215 24 0 chr6 29855956 29856202 -152559040 + MER58 DNA MER1_type 1 252 -89 674 109 12 260 chr6 29856200 29856361 -152558881 + MER58 DNA MER1_type 2166 2201 -219 * 2787 84 21 8 chr6 29856361 29856740 -152558502 + L1PA8 LINE L1 5785 6168 -4 674 109 12 260 chr6 29856740 29856916 -152558326 + MER58 DNA MER1_type 2201 2419 -1 1605 155 52 17 chr6 29857672 29857962 -152557280 + AluJb SINE Alu 1 300 -12 219 189 0 0 chr6 29859223 29859276 -152555966 + GA-rich Low_complexity Low_complexity 2 54 0 269 379 17 0 chr6 29860438 29860554 -152554688 - MLT1K LTR MaLR -292 296 179 630 202 37 0 chr6 29860889 29860998 -152554244 + FLAM_C SINE Alu 3 115 -28 432 0 0 0 chr6 29860998 29861046 -152554196 + (CA)n Simple_repeat Simple_repeat 1 48 0 1834 137 24 27 chr6 29861048 29861457 -152553785 - LTR46 LTR ERV1 0 460 1 443 295 40 0 chr6 29861926 29862075 -152553167 - L1MC4a LINE L1 -1886 5922 5768 463 274 145 36 chr6 29862260 29862508 -152552734 - L2 LINE L2 -22 3291 3017 486 237 78 61 chr6 29862566 29862811 -152552431 - L1MC4a LINE L1 -2297 5511 5263 359 313 39 62 chr6 29863769 29864025 -152551217 - L1MC4a LINE L1 -2071 4075 3826 4329 129 19 3 chr6 29865071 29865705 -152549537 - L1PA15 LINE L1 0 6165 5522 245 29 29 0 chr6 29866130 29866164 -152549078 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1377 244 82 48 chr6 29866605 29867224 -152548018 - L2 LINE L2 -238 3075 2439 509 269 19 13 chr6 29867260 29867416 -152547826 + MIR SINE MIR 78 234 -28 270 333 0 24 chr6 29867424 29867550 -152547692 - L2 LINE L2 -253 3019 2897 291 346 182 21 chr6 29867579 29867908 -152547334 - L2 LINE L2 -515 2799 2418 2143 131 0 0 chr6 29868007 29868305 -152546937 + AluSx SINE Alu 1 298 -14 361 258 37 6 chr6 29868368 29868531 -152546711 + (TA)n Simple_repeat Simple_repeat 2 169 0 1997 193 12 80 chr6 29868582 29869095 -152546147 - MLT2B1 LTR ERVL -42 478 1 1504 85 0 5 chr6 29869131 29869320 -152545922 - AluSg/x SINE Alu -23 287 100 389 278 106 13 chr6 29869671 29869822 -152545420 - L2 LINE L2 -954 2360 2196 259 318 132 31 chr6 29869816 29870074 -152545168 + L2 LINE L2 1703 1986 -1328 * 608 213 121 0 chr6 29870125 29870299 -152544943 - MIR SINE MIR -65 197 3 1182 165 263 4 chr6 29870523 29870805 -152544437 - AluJo SINE Alu 0 343 1 338 171 102 0 chr6 29870809 29870897 -152544345 - L1MC4 LINE L1 -851 7191 7095 605 213 0 29 chr6 29872075 29872211 -152543031 - L1ME1 LINE L1 -5 6161 6030 653 155 31 0 chr6 29872318 29872415 -152542827 + FRAM SINE Alu 30 129 -47 2197 121 0 3 chr6 29872436 29872742 -152542500 + AluSg1 SINE Alu 1 305 -4 1606 186 7 10 chr6 29872888 29873195 -152542047 - AluJo SINE Alu -6 306 1 244 218 0 18 chr6 29873373 29873428 -152541814 + L2 LINE L2 3217 3270 -2 1736 149 4 11 chr6 29873655 29873924 -152541318 + AluJo SINE Alu 23 289 -23 305 324 82 46 chr6 29874590 29874809 -152540433 - L2 LINE L2 -3 3269 3043 252 333 62 23 chr6 29874842 29874971 -152540271 - MIR3 SINE MIR -43 165 32 322 159 48 0 chr6 29876463 29876526 -152538716 + MER103 DNA DNA 25 90 -76 238 276 132 0 chr6 29877022 29877098 -152538144 + L2 LINE L2 3182 3267 -5 736 298 27 13 chr6 29877455 29877754 -152537488 - L1ME LINE L1 -361 5760 5458 3312 118 52 3 chr6 29877760 29877773 -152537469 + L1MC/D LINE L1 5221 5232 -1101 3404 117 48 27 chr6 29877773 29878165 -152537077 - L1MC1 LINE L1 0 6333 5950 1937 133 78 35 chr6 29878165 29878311 -152536931 + MER46B DNA MER2_type 1 47 -2684 2211 117 0 0 chr6 29878311 29878602 -152536640 + AluSx SINE Alu 1 291 -21 1937 133 78 35 chr6 29878602 29878801 -152536441 + MER46B DNA MER2_type 47 236 0 3404 117 48 27 chr6 29878801 29878901 -152536341 - L1MC1 LINE L1 -383 5950 5826 2021 148 0 6 chr6 29878901 29879212 -152536030 - AluSx SINE Alu -3 309 1 3404 117 48 27 chr6 29879212 29879265 -152535977 - L1MC1 LINE L1 -507 5826 5776 3312 118 52 3 chr6 29879265 29879783 -152535459 + L1MC1 LINE L1 5232 5774 -559 564 251 193 20 chr6 29879946 29880241 -152535001 + L1MC4a LINE L1 5571 5916 -1892 238 224 17 17 chr6 29880265 29880323 -152534919 - L2 LINE L2 0 3313 3256 181 354 162 10 chr6 29881413 29881512 -152533730 + L2 LINE L2 3153 3266 -6 268 319 126 12 chr6 29881826 29882080 -152533162 - L2 LINE L2 -882 2432 2150 636 259 138 34 chr6 29882103 29882558 -152532684 - MLT1H LTR MaLR -4 545 1 2700 186 74 93 chr6 29883453 29883715 -152531527 - L1MC4 LINE L1 -1 8041 7776 1629 132 0 53 chr6 29883715 29883996 -152531246 - AluJo SINE Alu -46 266 1 2700 186 74 93 chr6 29883996 29884575 -152530667 - L1MC4 LINE L1 -266 7776 7216 319 230 14 0 chr6 29884618 29884692 -152530550 + L2 LINE L2 3220 3294 -19 1090 120 86 14 chr6 29884961 29885170 -152530072 - L1MA9 LINE L1 -80 6232 6009 197 219 24 0 chr6 29885495 29885536 -152529706 + MIR SINE MIR 66 107 -155 575 216 137 46 chr6 29886967 29887208 -152528034 - MER20B DNA MER1_type -3 780 518 471 200 22 0 chr6 29887374 29887464 -152527778 + MLT1C LTR MaLR 1 92 -375 921 188 56 47 chr6 29887464 29887698 -152527544 - MSTB2 LTR MaLR 0 457 222 881 135 0 23 chr6 29887749 29887882 -152527360 + AluJo/FLAM SINE Alu 1 130 -172 2087 99 19 22 chr6 29887884 29888197 -152527045 + AluSq SINE Alu 1 312 -1 2402 220 38 0 chr6 29888207 29888790 -152526452 + L1M1 LINE L1 2571 3175 -4390 733 182 0 0 chr6 29888795 29888905 -152526337 + AluJb SINE Alu 3 112 -200 9962 193 30 23 chr6 29888947 29889270 -152525972 + L1M1 LINE L1 3148 3468 -4097 1715 179 3 3 chr6 29889270 29889571 -152525671 - AluJb SINE Alu -11 301 1 9962 193 30 23 chr6 29889571 29891598 -152523644 + L1M1 LINE L1 3468 5848 -1717 34 24 0 0 chr6 29891598 29891639 -152523603 + AT_rich Low_complexity Low_complexity 1 41 0 9962 193 30 23 chr6 29891639 29891869 -152523373 + L1M1 LINE L1 5848 6075 -1490 1048 227 10 76 chr6 29891967 29892109 -152523133 + MLT1C LTR MaLR 196 311 -156 2379 91 7 0 chr6 29892109 29892416 -152522826 - AluSc SINE Alu 0 309 1 1048 227 10 76 chr6 29892416 29892564 -152522678 + MLT1C LTR MaLR 311 467 0 15731 118 35 24 chr6 29892620 29895011 -152520231 + Tigger1 DNA MER2_type 1 2417 -1 659 238 48 69 chr6 29895703 29895892 -152519350 - MER20B DNA MER1_type -572 211 27 1414 161 96 0 chr6 29896543 29896792 -152518450 - AluJo SINE Alu -3 309 37 261 0 0 0 chr6 29896992 29897021 -152518221 + (T)n Simple_repeat Simple_repeat 1 29 0 1371 130 97 5 chr6 29897568 29897784 -152517458 + MER46A DNA MER2_type 1 236 0 263 320 150 0 chr6 29898367 29898514 -152516728 - MLT1L LTR MaLR -25 590 422 2387 100 0 0 chr6 29898900 29899201 -152516041 + AluSg SINE Alu 5 305 -5 2200 103 10 0 chr6 29901741 29902031 -152513211 - AluSc SINE Alu -16 293 1 431 237 86 69 chr6 29903627 29903872 -152511370 + MLT1J LTR MaLR 261 509 -2 272 231 179 0 chr6 29904026 29904104 -152511138 - MIR SINE MIR -108 154 63 15421 156 34 25 chr6 29904983 29911457 -152503785 - L1PB1 LINE L1 0 6867 1 243 0 0 0 chr6 29911670 29911697 -152503545 + (TG)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr6 29912012 29912035 -152503207 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr6 29912645 29912668 -152502574 + (TTG)n Simple_repeat Simple_repeat 2 24 0 265 68 0 0 chr6 29912836 29912924 -152502318 + Alu SINE Alu 257 344 0 262 203 31 0 chr6 29915402 29915466 -152499776 + (TA)n Simple_repeat Simple_repeat 1 66 0 506 279 74 67 chr6 29915472 29915787 -152499455 + L1ME LINE L1 5255 5571 -599 307 282 0 0 chr6 29915894 29915972 -152499270 + MLT1E LTR MaLR 1 78 -515 243 0 0 0 chr6 29916269 29916296 -152498946 + (CA)n Simple_repeat Simple_repeat 2 28 0 2387 85 0 0 chr6 29917274 29917567 -152497675 + AluSc SINE Alu 1 293 -16 2278 91 0 0 chr6 29917945 29918230 -152497012 + AluSc SINE Alu 1 285 -24 2178 127 7 0 chr6 29919073 29919381 -152495861 + AluSx SINE Alu 1 310 -2 243 88 0 0 chr6 29919396 29919430 -152495812 + (GGGGA)n Simple_repeat Simple_repeat 5 38 0 390 136 11 23 chr6 29919430 29919518 -152495724 + GA-rich Low_complexity Low_complexity 4 90 0 1755 234 97 28 chr6 29919882 29920347 -152494895 + MLT1E LTR MaLR 97 593 0 1721 181 68 64 chr6 29920441 29920926 -152494316 + L1MC5 LINE L1 6633 7119 -842 815 226 70 5 chr6 29920973 29921159 -152494083 + MIR SINE MIR 65 262 0 267 204 0 19 chr6 29921703 29921757 -152493485 - MIR SINE MIR -89 119 67 250 304 70 47 chr6 29922004 29922175 -152493067 + MIR SINE MIR 12 186 -76 940 244 76 60 chr6 29922218 29922587 -152492655 + L2 LINE L2 2933 3307 -6 407 268 143 42 chr6 29923576 29923744 -152491498 + MER5A DNA MER1_type 4 188 -1 530 268 174 14 chr6 29924092 29924305 -152490937 - MIR SINE MIR 0 262 16 915 256 14 5 chr6 29926294 29926513 -152488729 - MIR SINE MIR -37 225 5 1462 215 19 48 chr6 29926911 29927030 -152488212 + MLT1F1 LTR MaLR 53 174 -368 9476 54 1 1 chr6 29927030 29928101 -152487141 - MER11C LTR ERVK 0 1071 1 1462 215 19 48 chr6 29928101 29928392 -152486850 + MLT1F1 LTR MaLR 174 542 0 339 257 188 93 chr6 29929123 29929606 -152485636 + MLT1H LTR MaLR 21 549 0 1327 106 6 0 chr6 29929669 29929848 -152485394 + MER46A DNA MER2_type 57 236 0 308 282 0 13 chr6 29931134 29931212 -152484030 + L2 LINE L2 3237 3313 0 341 274 53 0 chr6 29931673 29931768 -152483474 + MIR SINE MIR 152 251 -11 672 304 118 38 chr6 29932482 29933124 -152482118 - L2 LINE L2 -2 3311 2637 244 281 110 61 chr6 29933737 29934082 -152481160 + L1MC5 LINE L1 7363 7724 -237 4573 144 24 34 chr6 29934295 29935091 -152480151 + LTR25 LTR ERV1 1 788 -6 511 335 67 0 chr6 29936510 29936689 -152478553 - L2 LINE L2 -571 2743 2553 246 366 89 0 chr6 29936733 29936856 -152478386 - L2 LINE L2 0 3313 3180 407 189 9 66 chr6 29936871 29936954 -152478288 - MER69 DNA AcHobo -31 2495 2418 1488 185 61 14 chr6 29936954 29937270 -152477972 + AluJo SINE Alu 1 312 0 407 189 9 66 chr6 29937270 29937292 -152477950 - MER69 DNA AcHobo -108 2418 2396 1602 183 56 0 chr6 29937292 29937576 -152477666 + AluSx SINE Alu 1 300 -12 744 201 49 42 chr6 29937661 29937805 -152477437 - FRAM SINE Alu -33 143 1 1916 192 76 25 chr6 29937806 29938492 -152476750 - MER69 DNA AcHobo -142 2384 1575 1911 118 33 0 chr6 29938492 29938763 -152476479 - AluSx SINE Alu -32 280 1 1916 192 76 25 chr6 29938763 29938888 -152476354 - MER69 DNA AcHobo -951 1575 1458 605 249 51 55 chr6 29938900 29939117 -152476125 - MER69 DNA AcHobo -960 266 51 355 252 71 47 chr6 29939137 29939264 -152475978 - MER69 DNA AcHobo -1096 130 1 311 194 0 0 chr6 29939319 29939381 -152475861 - L1MEc LINE L1 -4341 2266 2205 627 239 37 113 chr6 29939411 29939466 -152475776 - L1MEc LINE L1 -4393 2214 2156 2507 109 33 14 chr6 29939466 29939834 -152475408 + THE1C LTR MaLR 1 375 0 627 239 37 113 chr6 29939834 29940227 -152475015 - L1MEc LINE L1 -4451 2156 1704 868 335 65 29 chr6 29940232 29940405 -152474837 + L1M3c LINE L1 11 176 -5965 1843 209 19 8 chr6 29940405 29940764 -152474478 - MLT1A1 LTR MaLR 0 365 3 868 335 65 29 chr6 29940764 29941005 -152474237 + L1M3c LINE L1 176 440 -5701 465 271 0 8 chr6 29941005 29941123 -152474119 - LTR40c LTR ERVL -346 119 3 690 325 50 14 chr6 29941254 29941534 -152473708 + HERVL LTR ERVL 364 653 -4343 842 312 54 9 chr6 29941567 29941884 -152473358 + HERVL LTR ERVL 733 1063 -3933 2578 291 70 54 chr6 29941909 29942697 -152472545 + HERVL LTR ERVL 1667 2491 -2505 2282 64 61 10 chr6 29942697 29943003 -152472239 - AluY SINE Alu 0 321 1 2578 291 70 54 chr6 29943003 29943357 -152471885 + HERVL LTR ERVL 2491 2838 -2158 986 293 99 90 chr6 29943597 29944023 -152471219 + HERVL LTR ERVL 3214 3635 -2019 1857 160 3 49 chr6 29944023 29944348 -152470894 + AluSx SINE Alu 1 310 -2 986 293 99 90 chr6 29944348 29945492 -152469750 + HERVL LTR ERVL 3635 5104 -550 2156 112 3 29 chr6 29945518 29945832 -152469410 - AluSx SINE Alu -6 306 1 384 341 66 2 chr6 29946141 29946411 -152468831 + LTR16A LTR ERVL 73 399 -51 438 213 64 176 chr6 29946426 29946888 -152468354 + L2 LINE L2 2834 3296 -17 1173 296 67 48 chr6 29946888 29948022 -152467220 - L1MC/D LINE L1 -553 5609 4532 247 143 5 102 chr6 29948074 29948270 -152466972 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 * 417 197 0 34 chr6 29948261 29948439 -152466803 + (TA)n Simple_repeat Simple_repeat 2 173 0 312 273 67 34 chr6 29948762 29948971 -152466271 - L1MC4a LINE L1 -1722 6086 5871 261 57 0 0 chr6 29949257 29949292 -152465950 + (TG)n Simple_repeat Simple_repeat 1 35 0 855 224 20 5 chr6 29949596 29949792 -152465450 + MIR SINE MIR 12 210 -52 318 275 99 8 chr6 29950213 29950344 -152464898 - L1MC4a LINE L1 -1225 6583 6441 337 214 34 43 chr6 29950647 29950764 -152464478 - L1MC5 LINE L1 -36 7925 7810 262 199 35 28 chr6 29950768 29950909 -152464333 + CT-rich Low_complexity Low_complexity 5 146 0 563 221 45 111 chr6 29950948 29951397 -152463845 - L1MC5 LINE L1 -168 7793 7375 672 199 5 108 chr6 29951400 29951500 -152463742 - MER5B DNA MER1_type -7 171 97 1488 153 18 0 chr6 29951500 29951722 -152463520 - AluSx SINE Alu -84 228 3 672 199 5 108 chr6 29951722 29951807 -152463435 - MER5B DNA MER1_type -81 97 5 2467 80 0 19 chr6 29952129 29952442 -152462800 - AluSc SINE Alu -2 307 1 280 332 187 21 chr6 29952741 29952976 -152462266 - L2 LINE L2 -919 2395 2122 2428 149 196 40 chr6 29953040 29953571 -152461671 - LTR18B LTR ERVL 0 614 1 257 339 0 0 chr6 29953814 29953873 -152461369 - HERVL18 LTR ERVL -780 5267 5209 629 130 11 0 chr6 29953875 29953967 -152461275 - HERVL18 LTR ERVL -1561 4486 4394 5473 161 15 8 chr6 29953967 29954825 -152460417 - HERVL18 LTR ERVL -2466 3581 2718 1485 136 23 12 chr6 29954799 29955097 -152460145 - HERVL18 LTR ERVL -3570 2477 2119 * 1171 172 3 16 chr6 29955096 29955458 -152459784 - HERVL18 LTR ERVL -4237 1810 1390 * 499 206 0 0 chr6 29955445 29955537 -152459705 - HERVL18 LTR ERVL -5085 962 871 * 1467 197 19 4 chr6 29955544 29955813 -152459429 - HERVL18 LTR ERVL -5283 764 492 * 1500 197 13 16 chr6 29955795 29956100 -152459142 - HERVL18 LTR ERVL -5743 304 1 980 263 138 19 chr6 29956106 29956425 -152458817 - LTR18A LTR ERVL 0 357 1 533 226 266 23 chr6 29956425 29956602 -152458640 - MIR SINE MIR -28 234 15 694 186 23 16 chr6 29957237 29957366 -152457876 + MER2 DNA MER2_type 1 130 -215 875 171 0 19 chr6 29957367 29957525 -152457717 - FRAM SINE Alu -22 154 1 586 242 155 0 chr6 29957526 29957720 -152457522 + MER2 DNA MER2_type 122 345 0 * 1114 198 25 33 chr6 29957718 29957781 -152457461 - MLT1E2 LTR MaLR 0 626 564 2145 120 13 28 chr6 29957781 29958098 -152457144 + AluSx SINE Alu 1 312 0 1114 198 25 33 chr6 29958098 29958277 -152456965 - MLT1E2 LTR MaLR -62 564 386 1659 217 92 31 chr6 29959251 29959730 -152455512 - Charlie4a DNA MER1_type 0 508 1 724 261 93 19 chr6 29960228 29960443 -152454799 + MIR SINE MIR 3 233 -29 617 115 15 85 chr6 29960907 29961037 -152454205 - AluJb SINE Alu -1 311 191 1459 150 0 13 chr6 29961043 29961270 -152453972 - AluJb SINE Alu -82 230 7 352 324 94 0 chr6 29961302 29961472 -152453770 - L2 LINE L2 -9 3304 3119 646 134 0 31 chr6 29962275 29962372 -152452870 - FRAM SINE Alu -19 157 64 1580 199 0 20 chr6 29963141 29963437 -152451805 - AluJo SINE Alu -8 304 15 189 338 14 0 chr6 29963511 29963582 -152451660 + MIR SINE MIR 184 255 -7 270 309 72 33 chr6 29963645 29963797 -152451445 - MIR3 SINE MIR -6 202 45 1939 121 0 0 chr6 29963899 29964164 -152451078 - AluSx SINE Alu -8 304 40 2243 106 0 0 chr6 29966099 29966391 -152448851 - AluY SINE Alu -19 292 1 840 143 56 0 chr6 29966499 29966625 -152448617 - FLAM_C SINE Alu 0 133 1 2096 68 65 0 chr6 29966898 29967063 -152448179 - AluY SINE Alu -14 297 105 2375 39 28 3 chr6 29967063 29967346 -152447896 - L1PA5 LINE L1 0 6154 5865 2096 68 65 0 chr6 29967346 29967459 -152447783 - AluY SINE Alu -206 105 1 308 112 0 8 chr6 29968411 29968462 -152446780 - MLT2C1 LTR ERVL -8 389 350 257 238 38 0 chr6 29968462 29968542 -152446700 + (TA)n Simple_repeat Simple_repeat 2 84 0 1388 237 134 30 chr6 29968543 29968977 -152446265 - MLT2B1 LTR ERVL -41 479 1 239 214 0 0 chr6 29969190 29969232 -152446010 + L2 LINE L2 3194 3235 -37 214 214 298 0 chr6 29969390 29969474 -152445768 - L2 LINE L2 -3 3269 3161 1237 273 94 3 chr6 29969559 29969900 -152445342 + REP3 LTR ERV 4 375 -187 1231 136 205 110 chr6 29969979 29970083 -152445159 + MER7A DNA MER2_type 1 94 -2944 1765 159 14 0 chr6 29970083 29970359 -152444883 + AluJo SINE Alu 11 290 -22 1231 136 205 110 chr6 29970359 29970571 -152444671 + MER7A DNA MER2_type 94 345 -1 1854 137 0 58 chr6 29970925 29971238 -152444004 + AluJo SINE Alu 1 295 -17 5695 235 79 44 chr6 29971702 29971858 -152443384 - L1M4 LINE L1 -798 5348 5199 2537 74 0 0 chr6 29971858 29972167 -152443075 - AluSc SINE Alu 0 309 1 5695 235 79 44 chr6 29972167 29974072 -152441170 - L1M4 LINE L1 -947 5199 3215 1659 195 49 11 chr6 29974079 29974428 -152440814 - L1MA6 LINE L1 0 6300 5939 1726 218 68 10 chr6 29974450 29974949 -152440293 - L1M4 LINE L1 -2961 3185 2658 785 164 114 20 chr6 29974943 29975144 -152440098 + L1MDa LINE L1 1157 1376 -5164 * 784 258 48 5 chr6 29975226 29975435 -152439807 - L1MDa LINE L1 -6320 220 3 294 293 121 36 chr6 29975436 29975576 -152439666 + L2 LINE L2 3162 3313 0 2323 113 0 0 chr6 29975740 29976050 -152439192 - AluSq SINE Alu -3 310 1 2374 85 7 0 chr6 29976605 29976898 -152438344 + AluSc SINE Alu 1 295 -14 946 224 79 58 chr6 29976899 29977229 -152438013 + L1ME1 LINE L1 5825 6161 -5 1857 170 3 10 chr6 29977251 29977557 -152437685 + AluJo SINE Alu 1 304 -8 959 305 77 8 chr6 29977593 29978124 -152437118 + L1M4 LINE L1 3364 3931 -2215 2377 89 0 3 chr6 29978495 29978799 -152436443 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr6 29978992 29979013 -152436229 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 29979991 29980011 -152435231 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 380 217 43 11 chr6 29982211 29982303 -152432939 - MIR SINE MIR -98 164 70 830 198 132 22 chr6 29983096 29983323 -152431919 - MIR SINE MIR 0 262 11 523 276 42 3 chr6 29984730 29984933 -152430309 + MIR SINE MIR 3 261 -1 2185 118 3 7 chr6 29985996 29986300 -152428942 - AluSc SINE Alu -6 303 1 1449 229 36 22 chr6 29986855 29987218 -152428024 + MER87 LTR ERV1 174 541 0 411 293 81 7 chr6 29988670 29988835 -152426407 + MER5A DNA MER1_type 1 188 -1 199 378 54 0 chr6 29988848 29988959 -152426283 + MIR SINE MIR 30 146 -62 243 336 86 52 chr6 29989408 29989524 -152425718 + L2 LINE L2 3139 3258 -14 442 181 16 94 chr6 29991295 29991346 -152423896 - L1MC4 LINE L1 -66 7976 7923 2471 79 7 0 chr6 29991346 29991651 -152423591 - AluSg SINE Alu -3 307 1 442 181 16 94 chr6 29991651 29991726 -152423516 - L1MC4 LINE L1 -119 7923 7860 269 305 21 21 chr6 29992303 29992398 -152422844 + L2 LINE L2 2957 3051 -221 288 328 11 23 chr6 29992492 29992672 -152422570 + GA-rich Low_complexity Low_complexity 1 182 -304 1509 171 27 8 chr6 29992672 29992930 -152422312 + AluJo SINE Alu 39 301 -11 288 328 11 23 chr6 29992930 29992984 -152422258 + GA-rich Low_complexity Low_complexity 182 486 0 266 237 86 21 chr6 29993362 29993455 -152421787 + MIR SINE MIR 17 115 -147 2319 241 14 74 chr6 29993884 29994112 -152421130 + L2 LINE L2 2135 2375 -939 2289 107 0 0 chr6 29994112 29994410 -152420832 - AluSx SINE Alu -14 298 1 2319 241 14 74 chr6 29994410 29994953 -152420289 + L2 LINE L2 2375 2860 -454 378 304 44 39 chr6 29994979 29995183 -152420059 + L2 LINE L2 2951 3155 -158 1409 127 38 5 chr6 29995195 29995407 -152419835 - AluJo SINE Alu -12 300 82 439 336 14 0 chr6 29995408 29995548 -152419694 + L2 LINE L2 3164 3305 -8 2063 145 3 0 chr6 29995768 29996079 -152419163 - AluSx SINE Alu 0 312 1 877 179 0 148 chr6 29996204 29996461 -152418781 - MER20 DNA MER1_type 0 219 1 2538 26 0 51 chr6 29997811 29998123 -152417119 + AluY SINE Alu 1 296 -15 273 316 31 10 chr6 29998387 29998485 -152416757 + MIR3 SINE MIR 103 202 -6 1320 281 115 25 chr6 29999387 30000750 -152414492 + L1MC/D LINE L1 4203 5695 -743 318 352 93 43 chr6 30000832 30001207 -152414035 - L2 LINE L2 -799 2515 2122 1046 248 58 62 chr6 30002118 30002712 -152412530 + MLT1H1 LTR MaLR 1 583 -7 7649 50 0 0 chr6 30002987 30004259 -152410983 - L1PA6 LINE L1 -3 6151 4876 2237 99 0 0 chr6 30004505 30004817 -152410425 + AluSx SINE Alu 1 312 0 258 266 110 52 chr6 30005463 30005636 -152409606 + HAL1 LINE L1 2292 2474 -33 822 229 0 7 chr6 30005785 30005938 -152409304 + FRAM SINE Alu 8 159 -17 1816 197 60 52 chr6 30006549 30006996 -152408246 - MER74C LTR ERVL 0 460 10 212 259 37 0 chr6 30007011 30007065 -152408177 + MIR SINE MIR 86 141 -67 214 297 0 0 chr6 30009366 30009440 -152405802 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 310 29 0 0 chr6 30009445 30009480 -152405762 + U2 snRNA snRNA 1 35 -153 1149 131 0 12 chr6 30009542 30009710 -152405532 + AluJo SINE Alu 1 166 -146 3695 152 44 93 chr6 30009713 30010458 -152404784 - L1P4 LINE L1 -374 5792 5054 851 88 0 0 chr6 30010458 30010572 -152404670 - AluY SINE Alu -7 304 191 3695 152 44 93 chr6 30010572 30011217 -152404025 - L1P4 LINE L1 -1112 5054 4379 201 175 0 0 chr6 30011252 30011292 -152403950 + GA-rich Low_complexity Low_complexity 2 41 0 1841 173 0 29 chr6 30011306 30011619 -152403623 + AluJo SINE Alu 1 304 -8 1757 178 101 21 chr6 30011628 30011966 -152403276 - MLT1A1 LTR MaLR 0 365 1 1943 111 76 3 chr6 30012079 30012368 -152402874 + AluSg SINE Alu 1 310 0 1689 203 16 0 chr6 30012630 30012936 -152402306 - AluJb SINE Alu 0 312 2 337 284 114 34 chr6 30013264 30013440 -152401802 + L2 LINE L2 3032 3221 -92 1069 283 62 44 chr6 30013567 30013739 -152401503 - L1ME LINE L1 -5358 712 545 2118 77 48 0 chr6 30013739 30014034 -152401208 - AluSq SINE Alu 0 308 1 1069 283 62 44 chr6 30014034 30014359 -152400883 - L1ME LINE L1 -5525 545 205 244 313 184 6 chr6 30015098 30015261 -152399981 + MIR SINE MIR 21 212 -50 292 214 183 1 chr6 30015521 30015615 -152399627 - MER5A DNA MER1_type 0 189 62 2556 33 10 3 chr6 30015946 30016245 -152398997 - AluY SINE Alu -10 301 1 290 214 67 45 chr6 30016409 30016498 -152398744 + MIR SINE MIR 116 206 -56 209 237 0 0 chr6 30016530 30016568 -152398674 + MIR SINE MIR 7 44 -218 712 184 9 0 chr6 30016807 30016916 -152398326 + FLAM_C SINE Alu 2 111 -32 861 81 0 0 chr6 30016973 30017084 -152398158 - L1MA1 LINE L1 0 6302 6192 183 42 0 0 chr6 30017085 30017109 -152398133 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2335 75 0 0 chr6 30017109 30017390 -152397852 - AluY SINE Alu -30 281 1 909 203 0 0 chr6 30017392 30017555 -152397687 - FRAM SINE Alu -12 164 2 24 53 0 0 chr6 30017791 30017829 -152397413 + AT_rich Low_complexity Low_complexity 1 38 0 1527 213 13 16 chr6 30018016 30018326 -152396916 + AluJo SINE Alu 1 309 -3 3358 236 45 67 chr6 30019867 30021410 -152393832 + L1MC5 LINE L1 6414 7931 -30 16724 113 24 13 chr6 30023266 30024498 -152390744 - Tigger1 DNA MER2_type 0 2418 1143 1687 154 4 4 chr6 30024498 30024781 -152390461 - AluJb SINE Alu 0 305 23 16724 113 24 13 chr6 30024781 30025938 -152389304 - Tigger1 DNA MER2_type -1275 1143 1 2032 88 66 4 chr6 30025995 30026268 -152388974 - AluSq SINE Alu -23 290 1 217 347 0 25 chr6 30026353 30026474 -152388768 + L2 LINE L2 1902 2019 -1295 2316 164 0 0 chr6 30026532 30026880 -152388362 - MER7A DNA MER2_type 0 346 1 2136 101 21 0 chr6 30026973 30027259 -152387983 + AluSp SINE Alu 1 292 -21 227 319 60 118 chr6 30027291 30027912 -152387330 + L2 LINE L2 2157 2741 -573 219 310 142 18 chr6 30028389 30028502 -152386740 + L2 LINE L2 3139 3265 -7 189 0 0 0 chr6 30029553 30029574 -152385668 + (CCAA)n Simple_repeat Simple_repeat 1 21 0 636 144 21 0 chr6 30030527 30030624 -152384618 - MER94 DNA DNA -35 99 1 412 255 28 9 chr6 30030651 30030757 -152384485 - MER5A DNA MER1_type -51 138 31 577 230 89 30 chr6 30031854 30032124 -152383118 + L1MC4a LINE L1 5746 6031 -1777 25 65 0 0 chr6 30032202 30032248 -152382994 + AT_rich Low_complexity Low_complexity 1 46 0 555 234 131 17 chr6 30032424 30032599 -152382643 + MIR3 SINE MIR 8 202 -6 26 64 0 0 chr6 30033232 30033279 -152381963 + AT_rich Low_complexity Low_complexity 1 47 0 769 284 13 0 chr6 30034435 30034590 -152380652 + L2 LINE L2 3116 3272 0 196 266 89 65 chr6 30036118 30036242 -152379000 + MIR SINE MIR 112 238 -24 1838 101 0 4 chr6 30036538 30036785 -152378457 + AluSx SINE Alu 64 309 -3 421 195 24 0 chr6 30036884 30036966 -152378276 + MER112 DNA MER1_type 2 85 -175 2356 101 0 0 chr6 30037264 30037571 -152377671 - AluSx SINE Alu -4 308 2 2927 69 16 24 chr6 30037637 30038013 -152377229 - THE1C LTR MaLR -2 373 1 2080 102 39 7 chr6 30038278 30038562 -152376680 - AluSg SINE Alu -17 293 1 191 194 0 0 chr6 30038641 30038677 -152376565 - L2 LINE L2 0 3313 3278 520 229 37 0 chr6 30038677 30038786 -152376456 - L2 LINE L2 -11 3302 3190 974 263 16 31 chr6 30038795 30039050 -152376192 - MIR SINE MIR 0 262 12 998 269 83 16 chr6 30039107 30039658 -152375584 - L2 LINE L2 -144 3169 2577 2176 113 3 3 chr6 30041050 30041352 -152373890 - AluSq SINE Alu -11 302 1 470 286 64 7 chr6 30041371 30041511 -152373731 + MIR SINE MIR 85 232 -30 759 188 46 130 chr6 30041851 30042112 -152373130 + MIR SINE MIR 3 241 -21 493 147 42 11 chr6 30042847 30042942 -152372300 - MIR SINE MIR -51 211 114 1146 210 95 65 chr6 30042943 30043118 -152372124 - L1MC4 LINE L1 -898 7144 6976 1306 126 239 8 chr6 30043118 30043357 -152371885 - AluSx SINE Alu -8 294 1 1146 210 95 65 chr6 30043357 30043581 -152371661 - L1MC4 LINE L1 -1066 6976 6733 4769 130 79 14 chr6 30043593 30044369 -152370873 - LTR12 LTR ERV1 0 826 1 267 145 0 108 chr6 30044369 30044452 -152370790 - L1MC4a LINE L1 -1140 6668 6595 303 107 89 18 chr6 30044478 30044646 -152370596 + (TA)n Simple_repeat Simple_repeat 1 180 0 760 278 127 50 chr6 30044655 30045515 -152369727 - L1MC4a LINE L1 -1190 6618 5693 395 259 28 0 chr6 30045536 30045644 -152369598 - L1MC4a LINE L1 -2247 5561 5451 1090 228 135 17 chr6 30045712 30046068 -152369174 + L1ME3A LINE L1 5493 5890 -280 24 0 0 0 chr6 30047079 30047103 -152368139 + AT_rich Low_complexity Low_complexity 1 24 0 203 189 0 0 chr6 30048484 30048521 -152366721 + A-rich Low_complexity Low_complexity 1 37 0 578 299 47 8 chr6 30048523 30048777 -152366465 + L1ME3A LINE L1 5896 6159 -11 232 302 198 17 chr6 30048793 30048909 -152366333 - MIR SINE MIR -56 152 16 2317 111 3 0 chr6 30048948 30049254 -152365988 - AluSq SINE Alu -6 307 1 1639 65 69 48 chr6 30049421 30049652 -152365590 - AluY SINE Alu -18 293 58 445 331 184 4 chr6 30049869 30050141 -152365101 + L2 LINE L2 2216 2536 -778 5060 130 32 1 chr6 30050152 30051031 -152364211 - L1MA4A LINE L1 -3 6300 5395 895 191 0 24 chr6 30051031 30051199 -152364043 + AluJb SINE Alu 146 309 -3 22 0 0 0 chr6 30051321 30051343 -152363899 + AT_rich Low_complexity Low_complexity 1 22 0 2040 102 3 18 chr6 30051388 30051692 -152363550 - AluSg SINE Alu 0 300 1 343 254 149 0 chr6 30051693 30051827 -152363415 - L1ME LINE L1 -352 5818 5665 957 315 51 31 chr6 30051923 30052469 -152362773 + LTR67 LTR ERVL 1 557 0 360 70 53 0 chr6 30052779 30052836 -152362406 - Alu SINE Alu -3 297 238 22 35 0 0 chr6 30052888 30052917 -152362325 + AT_rich Low_complexity Low_complexity 1 29 0 480 245 14 68 chr6 30053061 30053208 -152362034 + MER69A DNA AcHobo 39 177 0 229 283 66 69 chr6 30053211 30053529 -152361713 - L1ME LINE L1 -927 5219 4903 278 253 53 21 chr6 30053638 30053733 -152361509 - HERV16 LTR ERVL -310 4686 4589 360 0 0 0 chr6 30053733 30053773 -152361469 + (TTCTC)n Simple_repeat Simple_repeat 2 41 0 849 329 54 14 chr6 30053781 30054207 -152361035 - HERV16 LTR ERVL -765 4999 4557 327 348 19 25 chr6 30054352 30054510 -152360732 - HERV16 LTR ERVL -1397 4257 4101 212 59 29 0 chr6 30055490 30055524 -152359718 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 5603 154 51 7 chr6 30056279 30057386 -152357856 + L1MC1 LINE L1 5180 6333 0 873 133 0 23 chr6 30058170 30058298 -152356944 - FLAM_C SINE Alu -6 127 3 292 305 61 15 chr6 30058712 30058843 -152356399 - MER5A DNA MER1_type -46 143 7 974 323 62 12 chr6 30058862 30059265 -152355977 - L2 LINE L2 -2 3311 2889 209 324 0 14 chr6 30059772 30059843 -152355399 - L2 LINE L2 0 3313 3244 2317 85 0 0 chr6 30060036 30060330 -152354912 - AluSc SINE Alu -15 294 1 1618 308 87 28 chr6 30060364 30061469 -152353773 + HAL1 LINE L1 1 1170 -1337 312 70 0 0 chr6 30061737 30061780 -152353462 + (CA)n Simple_repeat Simple_repeat 2 44 0 607 242 199 26 chr6 30062073 30062302 -152352940 + HAL1 LINE L1 1214 1402 -1105 270 0 0 0 chr6 30062302 30062332 -152352910 + (TG)n Simple_repeat Simple_repeat 2 31 0 607 242 199 26 chr6 30062332 30062519 -152352723 + HAL1 LINE L1 1402 1702 -805 388 246 218 0 chr6 30062979 30063158 -152352084 + HAL1 LINE L1 1700 1917 -590 311 315 55 62 chr6 30063225 30063288 -152351954 + HAL1 LINE L1 2084 2146 -361 1837 179 0 3 chr6 30063288 30063590 -152351652 + AluJb SINE Alu 1 301 -11 311 315 55 62 chr6 30063590 30063797 -152351445 + HAL1 LINE L1 2146 2354 -153 1938 133 3 70 chr6 30063797 30064128 -152351114 + AluSx SINE Alu 1 309 -3 311 315 55 62 chr6 30064128 30064148 -152351094 + HAL1 LINE L1 2354 2373 -134 228 267 52 47 chr6 30064153 30064325 -152350917 + HAL1 LINE L1 2335 2507 0 207 0 0 0 chr6 30064648 30064671 -152350571 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 216 0 0 0 chr6 30065511 30065535 -152349707 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 186 43 0 0 chr6 30066016 30066039 -152349203 + (TAA)n Simple_repeat Simple_repeat 1 23 0 375 260 81 16 chr6 30066047 30066170 -152349072 - MIR SINE MIR -44 218 88 1988 133 27 7 chr6 30066330 30066624 -152348618 + AluSx SINE Alu 1 300 -12 532 143 209 0 chr6 30067303 30067394 -152347848 + FLAM_C SINE Alu 11 120 -23 201 242 136 0 chr6 30067485 30067551 -152347691 - L2 LINE L2 -31 3282 3208 4275 133 47 59 chr6 30067684 30069092 -152346150 - pTR5 LTR ERV1 -13 2425 743 2163 89 7 0 chr6 30069830 30070121 -152345121 + AluSx SINE Alu 1 293 -19 42 0 0 0 chr6 30070239 30070281 -152344961 + AT_rich Low_complexity Low_complexity 1 42 0 431 262 64 14 chr6 30070320 30070461 -152344781 + L1MEc LINE L1 259 406 -5990 * 3823 164 8 29 chr6 30070460 30071229 -152344013 - L1MC3 LINE L1 -857 6928 6176 1113 61 0 0 chr6 30071465 30071597 -152343645 + AluY SINE Alu 1 132 -179 317 343 71 0 chr6 30072442 30072582 -152342660 - MIR SINE MIR -73 189 40 537 260 4 122 chr6 30072829 30073075 -152342167 + L2 LINE L2 3094 3310 -3 580 95 0 0 chr6 30073727 30073801 -152341441 - tRNA-Thr-ACT tRNA tRNA -3 74 1 270 247 161 16 chr6 30074720 30074781 -152340461 - L1M4 LINE L1 -1712 4434 4383 2286 108 0 9 chr6 30074781 30075096 -152340146 - AluSx SINE Alu 0 312 1 270 247 161 16 chr6 30075096 30075220 -152340022 - L1M4 LINE L1 -1763 4383 4222 22 56 0 0 chr6 30075392 30075428 -152339814 + AT_rich Low_complexity Low_complexity 1 36 0 1455 211 88 55 chr6 30076305 30076794 -152338448 - MLT1D LTR MaLR 0 505 1 334 345 24 43 chr6 30076803 30077012 -152338230 + MIR SINE MIR 58 262 0 240 328 154 33 chr6 30077026 30077389 -152337853 + L1MC/D LINE L1 5494 5900 -1908 696 37 0 0 chr6 30077798 30077880 -152337362 - tRNA-Leu-CTT tRNA tRNA -3 82 1 507 251 8 123 chr6 30078656 30078788 -152336454 + MIR SINE MIR 53 148 -114 1320 103 0 0 chr6 30078788 30078973 -152336269 + L1PB1 LINE L1 5964 6148 -3 507 251 8 123 chr6 30078973 30079075 -152336167 + MIR SINE MIR 148 260 -2 331 222 0 0 chr6 30079902 30079974 -152335268 + tRNA-Met-e tRNA tRNA 1 72 -3 856 202 11 0 chr6 30080203 30080386 -152334856 - MLT1D LTR MaLR 0 505 321 274 213 62 0 chr6 30080450 30080530 -152334712 + MER70-int LTR ERVL 482 566 -4457 475 340 39 12 chr6 30080871 30081130 -152334112 - MER70-int LTR ERVL -4196 827 562 496 313 0 0 chr6 30081178 30081344 -152333898 + MER70-int LTR ERVL 2446 2611 -2412 807 220 35 4 chr6 30081388 30081620 -152333622 + L1M4 LINE L1 4480 4718 -1428 720 300 47 39 chr6 30081633 30082016 -152333226 + MER70-int LTR ERVL 2760 3145 -1878 592 110 0 0 chr6 30082024 30082106 -152333136 + AluJb SINE Alu 209 290 -22 464 230 24 6 chr6 30082219 30082384 -152332858 - L1M4 LINE L1 -1610 4536 4369 2167 211 30 113 chr6 30082407 30083588 -152331654 - L1M4 LINE L1 -2305 3841 2759 247 242 16 0 chr6 30083592 30083654 -152331588 + (TA)n Simple_repeat Simple_repeat 2 64 0 2742 17 0 0 chr6 30083732 30084033 -152331209 - AluYa5 SINE Alu -10 301 1 753 207 0 7 chr6 30084070 30084215 -152331027 + AluJb SINE Alu 134 277 -35 549 230 80 49 chr6 30084283 30084509 -152330733 - LTR16A1 LTR ERVL -109 348 116 2736 178 71 26 chr6 30084551 30085215 -152330027 - LTR8A LTR ERV1 0 727 34 1370 206 26 41 chr6 30085447 30085649 -152329593 - MLT1C LTR MaLR 0 467 272 4112 122 27 37 chr6 30085649 30086347 -152328895 - LTR8 LTR ERV1 0 691 1 1370 206 26 41 chr6 30086347 30086532 -152328710 - MLT1C LTR MaLR -195 272 86 * 2360 110 48 0 chr6 30086531 30086886 -152328356 - MER83 LTR ERV1 -76 372 1 367 217 47 85 chr6 30086886 30087010 -152328232 - LTR8 LTR ERV1 -572 119 1 503 344 37 9 chr6 30087077 30087292 -152327950 - MIR SINE MIR -4 258 38 1496 101 5 0 chr6 30087439 30087638 -152327604 + AluSx SINE Alu 1 200 -112 400 86 0 0 chr6 30087638 30087696 -152327546 + AluSx SINE Alu 241 298 -12 570 81 0 0 chr6 30088168 30088242 -152327000 - tRNA-Thr-ACT tRNA tRNA -3 74 1 231 114 0 0 chr6 30088892 30088927 -152326315 + (T)n Simple_repeat Simple_repeat 1 35 0 293 246 0 0 chr6 30090002 30090067 -152325175 + tRNA-Leu-CTT tRNA tRNA 1 65 -20 7917 63 8 4 chr6 30090222 30091225 -152324017 + LTR13 LTR ERVK 1 1007 0 265 265 24 0 chr6 30091595 30091678 -152323564 + MIR SINE MIR 178 262 0 255 263 45 60 chr6 30091946 30092212 -152323030 - L1M4 LINE L1 -3010 3136 2875 314 320 109 30 chr6 30092241 30092782 -152322460 - L1M4 LINE L1 -3302 2844 2261 306 325 67 0 chr6 30093235 30093355 -152321887 + L2 LINE L2 2221 2348 -966 2213 108 7 3 chr6 30094393 30094690 -152320552 - AluSx SINE Alu -14 298 1 1473 158 110 0 chr6 30095519 30095802 -152319440 - AluJb SINE Alu 0 311 1 1012 219 214 11 chr6 30096116 30096472 -152318770 - MER31B LTR ERV1 0 466 39 3459 227 47 14 chr6 30096493 30097260 -152317982 - MER21B LTR ERV1 -54 809 18 430 209 0 44 chr6 30097281 30097372 -152317870 - MER21B LTR ERV1 -776 87 1 377 98 0 0 chr6 30097372 30097423 -152317819 - MER31B LTR ERV1 -415 51 1 780 226 51 0 chr6 30097667 30097844 -152317398 - MER5A DNA MER1_type 0 189 4 891 253 97 90 chr6 30097972 30098407 -152316835 + LTR16A1 LTR ERVL 20 457 0 183 175 53 0 chr6 30099096 30099153 -152316089 + (TTA)n Simple_repeat Simple_repeat 2 61 0 2138 131 6 6 chr6 30099959 30100272 -152314970 - AluSq SINE Alu 0 313 1 9371 58 3 150 chr6 30100690 30102311 -152312931 + SVA Other Other 2 1384 -2 362 211 9 0 chr6 30103198 30103312 -152311930 + (CA)n Simple_repeat Simple_repeat 2 116 0 200 313 45 0 chr6 30103978 30104045 -152311197 + MIR3 SINE MIR 90 159 -49 270 0 0 0 chr6 30105882 30105912 -152309330 + (CA)n Simple_repeat Simple_repeat 2 31 0 181 227 173 40 chr6 30106588 30106663 -152308579 + MIR3 SINE MIR 90 174 -34 282 203 54 0 chr6 30106669 30106743 -152308499 + L1MC/D LINE L1 5760 5837 -1971 1834 126 7 14 chr6 30106743 30107020 -152308222 - AluSx SINE Alu -13 299 25 345 157 0 0 chr6 30107020 30107071 -152308171 - Alu SINE Alu -252 51 1 200 128 0 26 chr6 30107334 30107373 -152307869 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 1956 153 0 3 chr6 30107699 30107987 -152307255 + AluSx SINE Alu 1 287 -25 2004 127 7 45 chr6 30108413 30108721 -152306521 + AluSx SINE Alu 1 296 -16 2545 235 13 13 chr6 30109160 30109717 -152305525 + MER90 LTR ERV1 1 557 -18 905 165 203 5 chr6 30110588 30110796 -152304446 + LTR1 LTR ERV1 7 253 -532 4122 99 230 111 chr6 30110833 30112216 -152303026 + pTR5 LTR ERV1 743 2438 0 2635 113 56 30 chr6 30112266 30112692 -152302550 + LTR1 LTR ERV1 348 784 -1 619 214 69 0 chr6 30113787 30113932 -152301310 + MER5A DNA MER1_type 35 189 0 594 267 27 11 chr6 30115420 30115607 -152299635 + MIR SINE MIR 49 238 -24 198 287 104 26 chr6 30115629 30115744 -152299498 - MIR SINE MIR -67 141 18 333 270 8 24 chr6 30116901 30117027 -152298215 - L3 LINE CR1 -802 775 652 1667 185 0 3 chr6 30117437 30117724 -152297518 - AluJb SINE Alu -26 286 1 327 25 0 0 chr6 30118073 30118113 -152297129 + (CA)n Simple_repeat Simple_repeat 1 40 0 180 111 0 0 chr6 30118400 30118427 -152296815 + (T)n Simple_repeat Simple_repeat 1 27 0 262 296 165 34 chr6 30118521 30118697 -152296545 + MIR SINE MIR 57 255 -7 315 214 40 56 chr6 30118857 30118983 -152296259 - L1MC5 LINE L1 -36 7925 7802 231 348 27 9 chr6 30119543 30119655 -152295587 - MIR3 SINE MIR -13 195 82 218 298 0 0 chr6 30120778 30120861 -152294381 + MIR SINE MIR 30 111 -151 2349 101 0 3 chr6 30121102 30121400 -152293842 + AluSq SINE Alu 1 297 -16 309 200 118 0 chr6 30122325 30122410 -152292832 - MIR SINE MIR -89 173 79 21 0 0 0 chr6 30123146 30123167 -152292075 + AT_rich Low_complexity Low_complexity 1 21 0 3519 65 9 0 chr6 30123827 30124274 -152290968 + L1PA13 LINE L1 5710 6160 -3 26 64 0 0 chr6 30124298 30124345 -152290897 + AT_rich Low_complexity Low_complexity 1 47 0 241 210 111 0 chr6 30124468 30124549 -152290693 - L1MC/D LINE L1 -2330 5478 5389 183 157 206 69 chr6 30125990 30126092 -152289150 + MIR SINE MIR 86 201 -61 180 77 0 0 chr6 30126681 30126707 -152288535 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 393 261 117 50 chr6 30127439 30127619 -152287623 - MIR3 SINE MIR -6 202 11 2902 77 25 5 chr6 30127943 30127959 -152287283 - L1MA2 LINE L1 -15 6289 6275 768 52 0 0 chr6 30127959 30128056 -152287186 + (TA)n Simple_repeat Simple_repeat 2 98 0 2902 77 25 5 chr6 30128056 30128440 -152286802 - L1MA2 LINE L1 -29 6275 5881 23 0 0 0 chr6 30128851 30128874 -152286368 + AT_rich Low_complexity Low_complexity 1 23 0 944 235 17 52 chr6 30128919 30129149 -152286093 + MER58A DNA MER1_type 1 222 -2 1708 94 0 9 chr6 30130350 30130601 -152284641 + AluSg/x SINE Alu 87 335 0 329 262 60 54 chr6 30130601 30130750 -152284492 + MER5B DNA MER1_type 29 178 0 288 274 59 10 chr6 30130778 30130880 -152284362 + MIR SINE MIR 39 145 -63 210 386 71 0 chr6 30131866 30131993 -152283249 - L2 LINE L2 0 3272 3137 1904 152 3 23 chr6 30132008 30132317 -152282925 + AluJo SINE Alu 1 303 -9 430 141 0 13 chr6 30132507 30132585 -152282657 + AluJ/FRAM SINE Alu 227 303 -9 950 291 67 35 chr6 30134254 30134625 -152280617 + LTR16A LTR ERVL 66 448 -2 987 333 62 21 chr6 30134628 30135099 -152280143 + HERV16 LTR ERVL 2 491 -4505 1081 203 13 22 chr6 30135105 30135337 -152279905 + AluJo SINE Alu 8 237 -75 999 280 61 19 chr6 30135535 30135896 -152279346 + HERV16 LTR ERVL 913 1288 -3708 22 0 0 0 chr6 30135926 30135948 -152279294 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 30136035 30136057 -152279185 + AT_rich Low_complexity Low_complexity 1 22 0 265 163 10 9 chr6 30137123 30137326 -152277916 + AluJb SINE Alu 1 293 -9 1944 153 0 16 chr6 30138033 30138341 -152276901 - AluSx SINE Alu -9 303 1 1194 256 41 93 chr6 30138341 30138856 -152276386 + MLT1H LTR MaLR 62 549 0 21 0 0 0 chr6 30139296 30139317 -152275925 + AT_rich Low_complexity Low_complexity 1 21 0 1232 260 102 16 chr6 30139627 30140253 -152274989 + HAL1 LINE L1 1533 2242 -265 383 163 113 12 chr6 30140288 30140368 -152274874 + L1M4b LINE L1 31 118 -6741 1461 124 5 0 chr6 30140371 30140573 -152274669 + AluSg SINE Alu 2 204 -106 648 254 63 64 chr6 30140573 30140877 -152274365 + L1ME1 LINE L1 5858 6162 -4 1695 119 0 20 chr6 30140994 30141246 -152273996 - AluSc SINE Alu -5 304 58 227 167 0 0 chr6 30141514 30141550 -152273692 - MER21B LTR ERV1 -371 492 457 657 14 0 0 chr6 30142290 30142362 -152272880 - tRNA-Arg-CGA tRNA tRNA -4 72 1 347 195 0 13 chr6 30143642 30143717 -152271525 + AluS SINE Alu 1 59 -249 248 197 0 33 chr6 30143717 30143778 -152271464 + G-rich Low_complexity Low_complexity 2 60 0 407 124 41 113 chr6 30143785 30143882 -152271360 + FLAM_A SINE Alu 39 128 -5 826 317 99 16 chr6 30143919 30144594 -152270648 + L1M4 LINE L1 3347 4077 -2069 32 26 0 0 chr6 30144731 30144770 -152270472 + AT_rich Low_complexity Low_complexity 1 39 0 312 266 18 18 chr6 30145136 30145245 -152269997 - L1ME3A LINE L1 -5 6165 6057 1342 245 34 41 chr6 30145317 30145733 -152269509 - L1ME3A LINE L1 -112 6058 5646 335 255 49 20 chr6 30145736 30145838 -152269404 + LTR52 LTR ERVL 4 108 -313 1556 129 129 6 chr6 30145838 30146171 -152269071 - L1 LINE L1 -1556 4654 4281 * 6182 112 9 25 chr6 30146170 30147379 -152267863 + L1PB1 LINE L1 4975 6151 0 4397 166 33 1 chr6 30147384 30148258 -152266984 - L1 LINE L1 -1919 4291 3390 2021 200 32 36 chr6 30148269 30148763 -152266479 - MER21B LTR ERV1 -3 860 394 2844 229 70 18 chr6 30148801 30149701 -152265541 + MSTD-int LTR MaLR 740 1735 0 1884 196 12 53 chr6 30149701 30150114 -152265128 + MSTD LTR MaLR 1 396 0 1624 253 11 2 chr6 30150115 30150578 -152264664 - L1 LINE L1 -4716 1425 959 1492 220 13 5 chr6 30150593 30150989 -152264253 + L1MC3 LINE L1 2673 3071 -3075 301 180 0 0 chr6 30150987 30151048 -152264194 - L1M4 LINE L1 -1390 4756 4696 * 23 0 0 0 chr6 30151093 30151116 -152264126 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr6 30151226 30151251 -152263991 + (CA)n Simple_repeat Simple_repeat 2 26 0 192 357 0 0 chr6 30151318 30151388 -152263854 + MIR3 SINE MIR 120 189 -19 876 181 38 5 chr6 30151945 30152155 -152263087 + L1MC3 LINE L1 4684 4900 -1246 1616 176 17 59 chr6 30152160 30152569 -152262673 + L1MC3 LINE L1 5639 6030 -1755 441 298 6 17 chr6 30152655 30152836 -152262406 + GA-rich Low_complexity Low_complexity 2 180 0 416 221 84 26 chr6 30152867 30153021 -152262221 + LTR41 LTR ERVL 1 163 -610 2739 162 106 4 chr6 30153103 30153651 -152261591 + LTR31 LTR ERV1 1 604 -15 456 205 168 31 chr6 30153891 30154054 -152261188 + LTR41 LTR ERVL 587 792 -3 300 211 0 21 chr6 30154763 30154858 -152260384 + L1MA4 LINE L1 6204 6296 -4 1239 159 155 65 chr6 30154948 30155078 -152260164 - AluJb SINE Alu 0 302 185 2122 113 0 7 chr6 30155078 30155369 -152259873 - AluSx SINE Alu 0 312 24 1239 159 155 65 chr6 30155369 30155515 -152259727 - AluJb SINE Alu -117 185 1 273 172 126 0 chr6 30155736 30155823 -152259419 - L1MC4a LINE L1 -1851 5957 5860 1217 260 42 82 chr6 30155823 30156350 -152258892 - L2 LINE L2 -4 3309 2804 2081 115 0 7 chr6 30156608 30156895 -152258347 + AluSg SINE Alu 1 285 -25 2231 67 0 76 chr6 30156906 30157234 -152258008 + AluY SINE Alu 3 305 -6 22 35 0 0 chr6 30157236 30157265 -152257977 + AT_rich Low_complexity Low_complexity 1 29 0 342 296 197 7 chr6 30157990 30158142 -152257100 + MER5A DNA MER1_type 9 189 0 710 168 156 42 chr6 30158150 30158174 -152257068 - MER5A DNA MER1_type 0 189 169 1860 188 37 0 chr6 30158174 30158526 -152256716 + MLT1A1 LTR MaLR 1 365 0 710 168 156 42 chr6 30158526 30158668 -152256574 - MER5A DNA MER1_type -20 169 4 215 195 0 0 chr6 30159554 30159595 -152255647 + L2 LINE L2 3272 3312 -1 273 321 44 44 chr6 30159602 30159739 -152255503 + L2 LINE L2 1784 1920 -1394 270 234 78 0 chr6 30159747 30159824 -152255418 - MLT1K LTR MaLR 0 588 506 2278 89 0 46 chr6 30160704 30161028 -152254214 - AluSg1 SINE Alu 0 309 1 21 57 0 0 chr6 30161583 30161618 -152253624 + AT_rich Low_complexity Low_complexity 1 35 0 2004 135 30 3 chr6 30161915 30162211 -152253031 - AluSc SINE Alu -5 304 1 257 299 64 67 chr6 30162855 30163199 -152252043 + MLT1L LTR MaLR 129 471 -144 301 264 203 28 chr6 30163281 30163463 -152251779 - HAL1 LINE L1 -1191 1316 1103 24 32 0 0 chr6 30163481 30163512 -152251730 + AT_rich Low_complexity Low_complexity 1 31 0 329 248 55 37 chr6 30163760 30163869 -152251373 - L1ME3A LINE L1 -241 5929 5819 329 207 60 66 chr6 30163869 30164022 -152251220 - L1ME3 LINE L1 -2 6332 6019 666 279 142 38 chr6 30164028 30164425 -152250817 - L1ME3 LINE L1 -346 5824 5470 1763 118 118 0 chr6 30164425 30164688 -152250554 - AluSx SINE Alu -18 294 1 666 279 142 38 chr6 30164688 30165310 -152249932 - L1ME3 LINE L1 -700 5470 4690 1929 199 7 17 chr6 30165448 30165861 -152249381 + LTR2 LTR ERV1 41 449 0 34 24 0 0 chr6 30165861 30165902 -152249340 + AT_rich Low_complexity Low_complexity 1 41 0 861 207 0 0 chr6 30165909 30166054 -152249188 - FRAM SINE Alu -31 145 1 1702 196 68 27 chr6 30166121 30166560 -152248682 - LTR2B LTR ERV1 0 490 34 2320 108 3 0 chr6 30167080 30167386 -152247856 + AluSg SINE Alu 1 307 -3 2057 138 0 0 chr6 30170207 30170498 -152244744 + AluSx SINE Alu 1 291 -21 202 151 164 0 chr6 30170776 30170849 -152244393 - MER5C DNA MER1_type -112 212 128 226 317 40 40 chr6 30171176 30171500 -152243742 - Charlie3 DNA MER1_type -320 2390 2107 489 356 18 22 chr6 30171666 30172520 -152242722 - Charlie1 DNA MER1_type -812 1949 1102 34 42 0 0 chr6 30173091 30173139 -152242103 + AT_rich Low_complexity Low_complexity 1 48 0 455 237 79 0 chr6 30173352 30173466 -152241776 - MER5C DNA MER1_type -200 124 2 2083 149 0 13 chr6 30175438 30175739 -152239503 - AluSx SINE Alu -15 297 1 1128 68 0 0 chr6 30175953 30176085 -152239157 - AluYb8 SINE Alu -186 132 1 4475 144 52 11 chr6 30176558 30177310 -152237932 + LTR39 LTR ERV1 1 783 0 974 83 0 0 chr6 30178940 30179061 -152236181 + AluSq/x SINE Alu 1 121 -191 1956 118 40 40 chr6 30179336 30179633 -152235609 + AluSx SINE Alu 2 298 -14 1904 170 0 3 chr6 30180230 30180530 -152234712 + AluJb SINE Alu 1 299 -13 342 286 71 92 chr6 30180613 30181096 -152234146 - MLT1L LTR MaLR -35 580 3 1460 115 50 0 chr6 30181324 30181542 -152233700 - MER30 DNA MER1_type 0 230 2 2292 91 0 7 chr6 30181815 30182124 -152233118 + AluSc SINE Alu 1 307 -2 2069 73 37 0 chr6 30182286 30182580 -152232662 + AluY SINE Alu 1 304 0 242 272 0 11 chr6 30183344 30183449 -152231793 - Tigger1 DNA MER2_type -942 1476 1291 261 291 37 30 chr6 30183847 30183981 -152231261 - Tigger7 DNA MER2_type -1550 937 803 430 254 77 41 chr6 30185000 30185169 -152230073 - MIR SINE MIR -45 217 43 214 295 123 41 chr6 30186890 30187033 -152228209 - MIR SINE MIR -21 187 32 338 307 85 11 chr6 30188026 30188215 -152227027 + MER69 DNA AcHobo 1 203 -2323 338 160 100 60 chr6 30188221 30188321 -152226921 + MER69 DNA AcHobo 2421 2524 -2 633 28 0 0 chr6 30188554 30188626 -152226616 + tRNA-Gln-CAA tRNA tRNA 1 72 -3 225 119 0 0 chr6 30189007 30189049 -152226193 + (T)n Simple_repeat Simple_repeat 1 42 0 706 206 71 139 chr6 30190564 30190953 -152224289 + MER31B LTR ERV1 3 466 0 667 159 0 8 chr6 30191129 30191261 -152223981 + L1MA6 LINE L1 3840 3970 -2176 5687 153 38 41 chr6 30191269 30192569 -152222673 + L1MA6 LINE L1 4134 5437 -863 2345 78 0 3 chr6 30192569 30192865 -152222377 + AluSx SINE Alu 2 296 -16 1663 153 3 55 chr6 30192866 30193192 -152222050 - AluJo SINE Alu 0 312 4 5687 153 38 41 chr6 30193192 30193548 -152221694 + L1MA6 LINE L1 5437 5776 -524 2039 137 17 0 chr6 30193548 30193840 -152221402 + AluSq SINE Alu 1 297 -16 5687 153 38 41 chr6 30193840 30194177 -152221065 + L1MA6 LINE L1 5776 6113 -187 1067 206 118 7 chr6 30194254 30194570 -152220672 + AluJb SINE Alu 1 346 0 2295 101 3 0 chr6 30194616 30194924 -152220318 + AluSq SINE Alu 1 309 -4 235 313 6 106 chr6 30194983 30195143 -152220099 - MER5A DNA MER1_type -24 165 22 895 271 38 42 chr6 30195143 30195594 -152219648 + L1MC4a LINE L1 5501 5948 -356 39 0 0 0 chr6 30195770 30195809 -152219433 + AT_rich Low_complexity Low_complexity 1 39 0 784 0 0 0 chr6 30196515 30196597 -152218645 - tRNA-Ser-AGC tRNA tRNA -3 82 1 223 261 120 11 chr6 30197311 30197403 -152217839 + MIR SINE MIR 35 136 -126 1733 134 47 0 chr6 30197784 30197859 -152217383 + AluSx SINE Alu 47 117 -195 405 0 0 0 chr6 30197859 30197904 -152217338 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 1733 134 47 0 chr6 30197904 30198082 -152217160 + AluSx SINE Alu 117 312 0 2819 214 51 53 chr6 30198083 30198610 -152216632 + L1MC/D LINE L1 4275 4801 -1543 2258 138 76 9 chr6 30198610 30198951 -152216291 + THE1B LTR MaLR 1 364 0 2819 214 51 53 chr6 30198951 30199526 -152215716 + L1MC/D LINE L1 4801 5436 -908 1815 157 20 10 chr6 30199530 30199823 -152215419 + AluSx SINE Alu 5 300 -12 405 238 27 27 chr6 30199824 30200009 -152215233 + L1MC5 LINE L1 7506 7690 -271 321 26 0 0 chr6 30200037 30200075 -152215167 - MER4D LTR ERV1 -74 798 761 2454 56 0 13 chr6 30200075 30200380 -152214862 - AluY SINE Alu -10 301 1 614 229 65 19 chr6 30200390 30200604 -152214638 + L1MC5 LINE L1 7689 7912 -49 1657 166 18 22 chr6 30200715 30200992 -152214250 - AluSg SINE Alu -32 278 3 37 0 0 0 chr6 30201291 30201328 -152213914 + AT_rich Low_complexity Low_complexity 1 37 0 2061 129 7 0 chr6 30201388 30201683 -152213559 - AluSx SINE Alu -15 297 1 2452 47 23 10 chr6 30202132 30202433 -152212809 - AluY SINE Alu -6 305 1 238 236 82 45 chr6 30202450 30202560 -152212682 - L1M2 LINE L1 -4314 2535 2422 319 277 78 41 chr6 30202585 30202827 -152212415 - L1MDa LINE L1 -4749 1380 1130 313 220 0 0 chr6 30202903 30202962 -152212280 - MLT1E1 LTR MaLR -3 651 593 822 253 100 29 chr6 30203067 30203378 -152211864 - MLT1H LTR MaLR -226 369 1 443 329 69 32 chr6 30203384 30203510 -152211732 - L1MDa LINE L1 -5046 1073 953 2283 104 3 0 chr6 30203510 30203809 -152211433 + AluSx SINE Alu 1 300 -12 443 329 69 32 chr6 30203809 30204175 -152211067 - L1MDa LINE L1 -5166 953 563 904 256 160 39 chr6 30204617 30204727 -152210515 + L1MC4 LINE L1 7436 7531 -511 2246 84 3 43 chr6 30204727 30205049 -152210193 + AluSg SINE Alu 1 309 -1 904 256 160 39 chr6 30205049 30205474 -152209768 + L1MC4 LINE L1 7531 8036 -6 576 93 0 0 chr6 30206331 30206406 -152208836 + tRNA-Ala-GCG tRNA tRNA 1 75 0 22 0 0 0 chr6 30206652 30206674 -152208568 + AT_rich Low_complexity Low_complexity 1 22 0 4048 74 37 22 chr6 30207084 30207622 -152207620 + LTR14 LTR ERVK 3 548 0 1695 154 35 18 chr6 30207892 30208177 -152207065 + AluJo SINE Alu 1 290 -22 394 291 81 18 chr6 30208274 30208497 -152206745 + L1 LINE L1 4078 4314 -1832 771 268 41 12 chr6 30208543 30208786 -152206456 + L1MC5 LINE L1 6978 7227 -734 411 231 124 18 chr6 30208942 30209111 -152206131 + L1MC5 LINE L1 7283 7469 -492 1261 156 10 0 chr6 30209121 30209326 -152205916 + AluSq SINE Alu 3 209 -104 2316 85 14 3 chr6 30209415 30209709 -152205533 + AluSq SINE Alu 1 297 -16 186 43 0 0 chr6 30209720 30209743 -152205499 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 273 302 62 16 chr6 30210320 30210449 -152204793 + MER109 Unknown Unknown 469 603 -1829 * 11089 179 62 84 chr6 30210443 30211200 -152204042 + MER109 Unknown Unknown 1 773 -1659 2110 107 3 10 chr6 30211200 30211509 -152203733 - AluY SINE Alu 0 311 5 11089 179 62 84 chr6 30211509 30213129 -152202113 + MER109 Unknown Unknown 773 2427 -5 2352 97 3 3 chr6 30213129 30213438 -152201804 - AluSq SINE Alu -3 310 2 11089 179 62 84 chr6 30213438 30213632 -152201610 + MER109 Unknown Unknown 2427 2624 192 2281 119 0 0 chr6 30213632 30213934 -152201308 - AluSx SINE Alu -4 308 7 11089 179 62 84 chr6 30213934 30214509 -152200733 + MER109 Unknown Unknown 2624 1290 -1142 2080 102 46 0 chr6 30214509 30214793 -152200449 + AluSx SINE Alu 3 299 -13 11089 179 62 84 chr6 30214793 30215611 -152199631 + MER109 Unknown Unknown 1289 2123 -309 1037 129 48 47 chr6 30215744 30216073 -152199169 - LTR35 LTR ERV1 -228 390 1 245 29 0 29 chr6 30216158 30216193 -152199049 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1208 143 123 25 chr6 30216203 30216224 -152199018 - AluJb SINE Alu -44 268 250 1933 107 0 26 chr6 30216224 30216496 -152198746 - AluSx SINE Alu -47 265 1 201 74 0 0 chr6 30216496 30216523 -152198719 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1208 143 123 25 chr6 30216523 30216744 -152198498 - AluJb SINE Alu -61 251 1 5232 84 8 1 chr6 30216980 30217636 -152197606 - PABL_A LTR ERV1 0 660 1 1643 134 55 31 chr6 30217704 30217995 -152197247 + AluJo SINE Alu 7 304 -8 205 240 27 0 chr6 30218010 30218085 -152197157 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 245 307 93 0 chr6 30218104 30218179 -152197063 + MER21B LTR ERV1 26 107 -756 * 1185 201 55 4 chr6 30218176 30218444 -152196798 + MER21B LTR ERV1 19 324 -539 251 182 15 15 chr6 30218451 30218517 -152196725 + (TA)n Simple_repeat Simple_repeat 2 67 0 995 274 47 89 chr6 30218623 30218666 -152196576 - LTR16A LTR ERVL 0 450 407 1807 119 45 45 chr6 30218666 30218983 -152196259 - AluSx SINE Alu 0 318 2 995 274 47 89 chr6 30218983 30219198 -152196044 - LTR16A LTR ERVL -43 407 216 2145 90 36 0 chr6 30219198 30219475 -152195767 + AluSp SINE Alu 1 287 -26 995 274 47 89 chr6 30219475 30219683 -152195559 - LTR16A LTR ERVL -234 216 1 335 286 120 17 chr6 30219783 30219958 -152195284 + L1ME LINE L1 5298 5490 -680 1969 143 12 58 chr6 30219960 30220423 -152194819 + L1MA10 LINE L1 5169 5620 -548 * 45724 31 1 2 chr6 30220419 30226566 -152188676 + L1PA3 LINE L1 15 6152 -3 4264 129 28 43 chr6 30226567 30227310 -152187932 + L1MA10 LINE L1 5596 6327 -7 2154 130 0 0 chr6 30227324 30227624 -152187618 - AluSg SINE Alu -10 300 1 228 106 191 0 chr6 30227762 30227809 -152187433 - MLT2B1 LTR ERVL 0 515 460 243 192 17 50 chr6 30227809 30227929 -152187313 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 2136 198 58 22 chr6 30227940 30228385 -152186857 - MLT2B1 LTR ERVL -50 470 10 2444 69 0 7 chr6 30228484 30228789 -152186453 + AluY SINE Alu 1 303 -8 38 39 0 0 chr6 30228812 30228864 -152186378 + AT_rich Low_complexity Low_complexity 1 52 0 254 235 0 0 chr6 30228919 30228970 -152186272 + (ATG)n Simple_repeat Simple_repeat 2 52 0 2068 154 0 0 chr6 30229083 30229394 -152185848 + AluSx SINE Alu 1 311 -1 731 156 0 64 chr6 30229467 30229608 -152185634 + FLAM_A SINE Alu 1 132 -1 2717 108 17 6 chr6 30229690 30230050 -152185192 + THE1B LTR MaLR 1 364 0 2223 109 0 7 chr6 30230611 30230913 -152184329 + AluSx SINE Alu 1 300 -12 2128 100 0 4 chr6 30231050 30231365 -152183877 + AluSc SINE Alu 1 314 0 255 288 61 0 chr6 30231882 30231948 -152183294 - tRNA-Ala-GCG tRNA tRNA -3 72 3 495 155 0 0 chr6 30233256 30233327 -152181915 - tRNA-Ala-GCG tRNA tRNA -2 73 3 199 324 74 19 chr6 30233538 30233646 -152181596 + L2 LINE L2 3134 3247 -25 4999 139 27 13 chr6 30235287 30236115 -152179127 - L1MC1 LINE L1 -131 6482 5644 * 5985 157 43 54 chr6 30236112 30237333 -152177909 - L1MC1 LINE L1 -5216 1210 4 1661 189 20 0 chr6 30237406 30237708 -152177534 + AluSx SINE Alu 5 312 0 6930 142 119 86 chr6 30237839 30239482 -152175760 - pTR5 LTR ERV1 0 2438 742 2440 90 3 0 chr6 30239587 30239898 -152175344 + AluSx SINE Alu 1 312 0 1427 164 188 33 chr6 30240188 30240253 -152174989 - MSTA LTR MaLR -3 425 371 2494 46 0 7 chr6 30240253 30240556 -152174686 - AluY SINE Alu -7 304 4 1427 164 188 33 chr6 30240556 30240857 -152174385 - MSTA LTR MaLR -57 371 2 2338 95 0 3 chr6 30241480 30241785 -152173457 + AluSq SINE Alu 1 304 -9 1104 213 5 0 chr6 30241821 30242009 -152173233 - MER5A DNA MER1_type 0 189 1 659 28 0 0 chr6 30242620 30242692 -152172550 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 415 31 21 62 chr6 30242967 30243063 -152172179 + (TA)n Simple_repeat Simple_repeat 2 93 0 2401 49 39 0 chr6 30243063 30243349 -152171893 - AluY SINE Alu -14 297 1 3161 199 126 3 chr6 30243416 30244121 -152171121 + L1MC4 LINE L1 7090 7881 -161 2341 107 0 0 chr6 30244123 30244432 -152170810 - AluSg SINE Alu 0 310 2 195 100 0 0 chr6 30244460 30244490 -152170752 + (TG)n Simple_repeat Simple_repeat 2 31 0 190 140 20 20 chr6 30244517 30244567 -152170675 + (TA)n Simple_repeat Simple_repeat 2 51 0 203 125 25 0 chr6 30244649 30244689 -152170553 + (TA)n Simple_repeat Simple_repeat 1 41 0 27 49 0 0 chr6 30244753 30244794 -152170448 + AT_rich Low_complexity Low_complexity 1 41 0 181 372 21 11 chr6 30244821 30244915 -152170327 - MIR3 SINE MIR -99 109 15 21 0 0 0 chr6 30246771 30246792 -152168450 + AT_rich Low_complexity Low_complexity 1 21 0 275 237 169 34 chr6 30246844 30247021 -152168221 + MIR SINE MIR 49 249 -13 635 54 0 0 chr6 30247382 30247456 -152167786 - tRNA-Thr-ACT tRNA tRNA -3 74 1 228 354 0 0 chr6 30248875 30248957 -152166285 - L2 LINE L2 -11 3302 3221 2474 85 0 0 chr6 30249231 30249536 -152165706 + AluSx SINE Alu 1 305 -7 1090 134 32 0 chr6 30249538 30249695 -152165547 - THE1C LTR MaLR -213 162 1 2568 154 22 46 chr6 30249976 30250141 -152165101 + MLT1C LTR MaLR 19 186 -281 2285 78 3 10 chr6 30250141 30250434 -152164808 + AluSq SINE Alu 3 293 -20 2568 154 22 46 chr6 30250434 30250728 -152164514 + MLT1C LTR MaLR 186 467 0 7677 120 29 35 chr6 30252039 30252704 -152162538 + Tigger3b DNA MER2_type 1 668 -2360 2242 103 0 31 chr6 30252704 30253023 -152162219 - AluSx SINE Alu -3 309 1 7677 120 29 35 chr6 30253023 30253322 -152161920 + Tigger3b DNA MER2_type 668 959 -2069 1485 164 12 0 chr6 30253322 30253572 -152161670 - AluJb SINE Alu -59 253 1 7677 120 29 35 chr6 30253572 30253844 -152161398 + Tigger3b DNA MER2_type 959 1231 0 2421 64 10 0 chr6 30253863 30254158 -152161084 + AluY SINE Alu 1 298 -13 21 36 0 0 chr6 30255116 30255144 -152160098 + AT_rich Low_complexity Low_complexity 1 28 0 1739 92 0 0 chr6 30257029 30257256 -152157986 - AluSq SINE Alu -2 311 85 622 56 0 0 chr6 30257412 30257484 -152157758 - tRNA-Ala-GCG tRNA tRNA -3 72 1 22 35 0 0 chr6 30257544 30257573 -152157669 + AT_rich Low_complexity Low_complexity 1 29 0 482 161 117 0 chr6 30258567 30258669 -152156573 + MLT1A2 LTR MaLR 274 372 -2 688 249 76 10 chr6 30259052 30259249 -152155993 + L1MEc LINE L1 44 253 -6143 358 185 0 0 chr6 30259250 30259315 -152155927 + MLT2D LTR ERVL 1 65 -399 959 147 76 76 chr6 30259350 30259426 -152155816 + MLT2D LTR ERVL 53 128 -286 1741 147 47 0 chr6 30259426 30259705 -152155537 + AluSx SINE Alu 1 292 -20 959 147 76 76 chr6 30259705 30259839 -152155403 + MLT2D LTR ERVL 127 263 -151 529 270 0 45 chr6 30260738 30260960 -152154282 - MER20B DNA MER1_type -3 780 569 824 282 82 68 chr6 30261004 30261163 -152154079 - MER20B DNA MER1_type -222 561 406 1959 95 77 0 chr6 30261163 30261436 -152153806 - AluSg SINE Alu -15 295 2 824 282 82 68 chr6 30261436 30261539 -152153703 - MER20B DNA MER1_type -377 406 306 2342 76 0 13 chr6 30261539 30261840 -152153402 + AluSx SINE Alu 1 297 -15 824 282 82 68 chr6 30261840 30262087 -152153155 - MER20B DNA MER1_type -477 306 44 309 347 28 34 chr6 30262114 30262290 -152152952 + MLT1L LTR MaLR 156 330 -285 607 189 213 37 chr6 30262390 30262554 -152152688 - MER41D LTR ERV1 0 557 365 2303 108 3 0 chr6 30262567 30262873 -152152369 + AluSx SINE Alu 1 307 -5 454 286 112 6 chr6 30263220 30263381 -152151861 + MLT1L LTR MaLR 434 611 -4 27 29 0 0 chr6 30263412 30263446 -152151796 + AT_rich Low_complexity Low_complexity 1 34 0 1727 86 86 19 chr6 30263446 30263578 -152151664 - AluSx SINE Alu -26 286 164 2288 95 16 3 chr6 30263578 30263882 -152151360 - AluSq SINE Alu -5 308 1 1727 86 86 19 chr6 30263882 30264016 -152151226 - AluSx SINE Alu -148 164 2 386 279 54 54 chr6 30264023 30264170 -152151072 - L2 LINE L2 -605 2709 2563 * 482 242 32 8 chr6 30264139 30264263 -152150979 + L2 LINE L2 3184 3310 -3 1147 207 76 32 chr6 30264411 30264595 -152150647 + MER101B LTR ERV1 26 146 -328 1978 65 0 4 chr6 30264595 30264843 -152150399 + AluY SINE Alu 62 308 -3 1147 207 76 32 chr6 30264843 30265037 -152150205 + MER101B LTR ERV1 146 330 -144 485 273 13 33 chr6 30265098 30265248 -152149994 + L2 LINE L2 2292 2438 -876 2269 85 16 0 chr6 30265323 30265629 -152149613 - AluY SINE Alu 0 311 1 549 358 118 16 chr6 30265852 30266547 -152148695 - L2 LINE L2 -982 2332 1567 312 226 0 118 chr6 30266598 30266663 -152148579 + MER5A DNA MER1_type 12 62 -127 2200 123 3 0 chr6 30266663 30266971 -152148271 + AluSg SINE Alu 1 309 -1 312 226 0 118 chr6 30266971 30267007 -152148235 + MER5A DNA MER1_type 62 101 -88 220 315 145 21 chr6 30267091 30267326 -152147916 - L2 LINE L2 -1805 1509 1246 273 309 24 0 chr6 30267332 30267416 -152147826 + MIR3 SINE MIR 96 181 -27 2337 170 60 32 chr6 30268039 30268503 -152146739 + MLT1D LTR MaLR 1 477 -28 2192 113 3 3 chr6 30268656 30268967 -152146275 - AluSq SINE Alu -2 311 1 2554 72 3 0 chr6 30268967 30269273 -152145969 - AluSp SINE Alu -6 307 1 630 311 44 20 chr6 30269286 30269537 -152145705 - MIR SINE MIR -4 258 2 419 358 7 7 chr6 30269600 30269748 -152145494 - L2 LINE L2 -2489 825 678 2118 98 10 16 chr6 30269824 30270129 -152145113 - AluSp SINE Alu -10 303 1 869 181 0 0 chr6 30270198 30270325 -152144917 - FLAM_C SINE Alu -6 127 1 1742 171 26 19 chr6 30270334 30270644 -152144598 - AluJb SINE Alu 0 312 1 1969 113 27 14 chr6 30270676 30270968 -152144274 + AluSc SINE Alu 3 298 -11 721 128 0 10 chr6 30271726 30271828 -152143414 - AluSq SINE Alu -84 229 129 814 143 0 0 chr6 30272186 30272312 -152142930 - AluSg/x SINE Alu -44 266 141 683 0 0 0 chr6 30273011 30273083 -152142159 - tRNA-Ala-GCG tRNA tRNA -3 72 1 6497 144 19 29 chr6 30273940 30275175 -152140067 + L1MC1 LINE L1 5101 6321 -12 207 0 0 0 chr6 30275179 30275202 -152140040 + (A)n Simple_repeat Simple_repeat 1 23 0 2467 50 3 31 chr6 30275353 30275670 -152139572 + AluY SINE Alu 1 308 -3 1347 184 76 17 chr6 30275939 30276063 -152139179 + AluJb SINE Alu 1 116 -196 438 20 0 0 chr6 30276063 30276114 -152139128 + (TAA)n Simple_repeat Simple_repeat 2 52 0 1347 184 76 17 chr6 30276114 30276277 -152138965 + AluJb SINE Alu 116 305 -7 337 129 75 54 chr6 30276494 30276587 -152138655 - L1MC1 LINE L1 0 6333 6239 1189 217 53 38 chr6 30276594 30276935 -152138307 - L1M4 LINE L1 -2365 3781 3436 350 250 42 10 chr6 30276984 30277009 -152138233 - L1MC5 LINE L1 -53 7908 7885 2001 131 7 0 chr6 30277009 30277307 -152137935 + AluSx SINE Alu 1 300 -12 350 250 42 10 chr6 30277307 30277377 -152137865 - L1MC5 LINE L1 -76 7885 7810 262 111 0 0 chr6 30277476 30277512 -152137730 + MLT1F LTR MaLR 507 542 0 6086 120 32 57 chr6 30277753 30278830 -152136412 - L1MA3 LINE L1 0 6305 5255 21 36 0 0 chr6 30278971 30278999 -152136243 + AT_rich Low_complexity Low_complexity 1 28 0 255 228 51 0 chr6 30279128 30279207 -152136035 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1933 138 18 0 chr6 30280180 30280487 -152134755 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 30280831 30280853 -152134389 + AT_rich Low_complexity Low_complexity 1 22 0 3588 143 48 98 chr6 30281766 30282585 -152132657 + LTR5 LTR ERVK 190 967 -2 5126 119 17 4 chr6 30282587 30283334 -152131908 + HERVK LTR ERVK 1 757 -6486 37069 127 13 13 chr6 30283407 30286557 -152128685 + HERVK LTR ERVK 733 3760 -3657 5262 144 36 42 chr6 30286557 30287532 -152127710 + LTR5 LTR ERVK 1 969 0 37069 127 13 13 chr6 30287532 30290641 -152124601 + HERVK LTR ERVK 3760 6869 -548 1133 143 123 25 chr6 30340699 30340920 -152074322 + AluJb SINE Alu 1 199 -113 201 74 0 0 chr6 30340920 30340947 -152074295 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1839 107 0 26 chr6 30340947 30341219 -152074023 + AluSx SINE Alu 1 265 -47 1133 143 123 25 chr6 30341219 30341240 -152074002 + AluJb SINE Alu 198 268 -44 245 29 0 29 chr6 30341250 30341285 -152073957 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1054 132 48 47 chr6 30341370 30341699 -152073543 + LTR35 LTR ERV1 1 390 -228 4056 181 68 45 chr6 30341833 30342648 -152072594 - MER109 Unknown Unknown -309 2123 1282 1876 116 46 0 chr6 30342648 30342932 -152072310 - AluSx SINE Alu -13 299 3 4056 181 68 45 chr6 30342932 30343038 -152072204 - MER109 Unknown Unknown -1150 1282 1180 735 261 87 39 chr6 30343169 30343448 -152071794 - L1MC4 LINE L1 -198 7844 7539 2146 84 3 43 chr6 30343448 30343770 -152071472 - AluSg SINE Alu -1 309 1 735 261 87 39 chr6 30343770 30343880 -152071362 - L1MC4 LINE L1 -503 7539 7436 391 327 69 32 chr6 30344322 30344688 -152070554 + L1MEd LINE L1 563 953 -5166 2137 103 3 3 chr6 30344688 30344988 -152070254 - AluSx SINE Alu -12 300 1 391 327 69 32 chr6 30344988 30345114 -152070128 + L1MEd LINE L1 953 1073 -5046 828 252 61 33 chr6 30345120 30345431 -152069811 + MLT1H LTR MaLR 1 369 -226 312 220 0 0 chr6 30345536 30345595 -152069647 + MLT1E1 LTR MaLR 593 651 -3 2040 99 0 0 chr6 30346520 30346793 -152068449 + AluSx SINE Alu 9 281 -31 971 264 68 32 chr6 30346829 30347325 -152067917 - L1MEc LINE L1 -2605 3610 3097 216 0 0 0 chr6 30347326 30347350 -152067892 + (T)n Simple_repeat Simple_repeat 1 24 0 617 126 11 0 chr6 30347350 30347445 -152067797 - AluSg1 SINE Alu -212 97 2 975 245 64 30 chr6 30347448 30347917 -152067325 - L1MEc LINE L1 -3105 3110 2626 2008 68 4 0 chr6 30347925 30348190 -152067052 + AluY SINE Alu 4 269 -42 2086 94 3 47 chr6 30348707 30348740 -152066502 - AluSx SINE Alu -3 309 276 257 50 0 25 chr6 30348740 30348780 -152066462 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 2086 94 3 47 chr6 30348780 30349065 -152066177 - AluSx SINE Alu -36 276 5 1939 86 3 83 chr6 30349073 30349397 -152065845 - AluSc SINE Alu 0 300 1 575 214 59 54 chr6 30349414 30349663 -152065579 - L1MEc LINE L1 -3655 2560 2252 266 194 31 10 chr6 30349664 30349762 -152065480 + CT-rich Low_complexity Low_complexity 3 102 0 753 219 0 64 chr6 30349764 30349951 -152065291 - FAM SINE Alu 0 175 1 2505 55 3 3 chr6 30350222 30350531 -152064711 - AluY SINE Alu -2 309 1 253 291 12 12 chr6 30350669 30350755 -152064487 + CT-rich Low_complexity Low_complexity 4 89 0 3219 239 101 40 chr6 30351107 30351823 -152063419 - L1MC4 LINE L1 -106 7702 7031 2491 63 0 0 chr6 30351823 30352126 -152063116 - AluY SINE Alu -7 304 2 3219 239 101 40 chr6 30352126 30352993 -152062249 - L1MC4 LINE L1 -777 7031 6098 423 0 0 0 chr6 30353182 30353229 -152062013 + (GA)n Simple_repeat Simple_repeat 1 47 0 326 288 0 0 chr6 30353356 30353429 -152061813 + tRNA-Ala-GCG tRNA tRNA 1 73 -2 2357 110 0 0 chr6 30354093 30354431 -152060811 - AluY SINE Alu 0 338 1 3671 122 28 4 chr6 30355675 30356218 -152059024 + LTR6A LTR ERV1 9 564 0 60764 135 10 10 chr6 30356220 30357936 -152057306 + HERVS71 LTR ERV1 4 1719 -7259 2585 56 10 0 chr6 30357936 30358241 -152057001 - AluY SINE Alu -3 308 1 60764 135 10 10 chr6 30358241 30365460 -152049782 + HERVS71 LTR ERV1 1719 8937 -41 3672 124 30 4 chr6 30365470 30366012 -152049230 + LTR6A LTR ERV1 9 564 0 2302 106 0 0 chr6 30366726 30367069 -152048173 - AluSx SINE Alu 0 343 1 607 29 0 0 chr6 30367735 30367804 -152047438 - tRNA-Phe-TTC tRNA tRNA -7 69 1 669 138 0 204 chr6 30367905 30368130 -152047112 + AluSg/x SINE Alu 124 302 -10 1156 121 11 11 chr6 30368237 30368419 -152046823 - AluSg/x SINE Alu -7 305 124 524 96 0 14 chr6 30368519 30368592 -152046650 + tRNA-Phe-TTC tRNA tRNA 1 72 -4 2096 108 3 3 chr6 30368790 30369077 -152046165 - AluSx SINE Alu -25 287 1 807 42 42 0 chr6 30369371 30369489 -152045753 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 1314 169 7 83 chr6 30369493 30369794 -152045448 - AluJb SINE Alu -34 278 1 736 209 32 102 chr6 30370665 30370770 -152044472 - MER33 DNA MER1_type -2266 319 208 1163 133 9 64 chr6 30370770 30370988 -152044254 - L1PA16 LINE L1 -9 6157 5952 736 209 32 102 chr6 30370988 30371119 -152044123 - MER33 DNA MER1_type -2377 208 69 258 81 0 0 chr6 30371119 30371156 -152044086 + (TA)n Simple_repeat Simple_repeat 1 37 0 2253 109 0 0 chr6 30371156 30371450 -152043792 - AluSg SINE Alu -16 294 1 736 209 32 102 chr6 30371450 30371564 -152043678 - MER33 DNA MER1_type -2514 71 1 2213 104 3 13 chr6 30372334 30372652 -152042590 - AluSq SINE Alu 0 313 1 973 189 6 0 chr6 30373082 30373257 -152041985 - FRAM SINE Alu -3 173 1 561 69 0 0 chr6 30373747 30373819 -152041423 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 21 0 0 0 chr6 30374153 30374174 -152041068 + GC_rich Low_complexity Low_complexity 1 21 0 2303 88 3 0 chr6 30374505 30374799 -152040443 + AluSp SINE Alu 3 297 -16 545 180 14 86 chr6 30375493 30375603 -152039639 + MER5A DNA MER1_type 61 162 -27 2251 82 4 0 chr6 30375603 30375906 -152039336 - AluSg SINE Alu 0 304 1 545 180 14 86 chr6 30375906 30375933 -152039309 + MER5A DNA MER1_type 162 189 0 807 97 24 24 chr6 30376209 30376374 -152038868 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 2208 119 26 0 chr6 30376380 30376683 -152038559 - AluSx SINE Alu -1 311 1 559 237 290 15 chr6 30376885 30377147 -152038095 - L1MDa LINE L1 -1062 5478 5145 1708 127 48 65 chr6 30377213 30377514 -152037728 + THE1C LTR MaLR 19 324 -51 2155 113 0 0 chr6 30377514 30377807 -152037435 + AluSg SINE Alu 3 295 -15 1708 127 48 65 chr6 30377807 30377859 -152037383 + THE1C LTR MaLR 324 375 0 1498 247 57 52 chr6 30377890 30378283 -152036959 - L1MDa LINE L1 -2161 4379 3989 2058 56 108 4 chr6 30378283 30378552 -152036690 - AluY SINE Alu -14 297 1 1498 247 57 52 chr6 30378552 30378610 -152036632 - L1MDa LINE L1 -2551 3989 3933 2324 99 0 0 chr6 30378610 30378904 -152036338 - AluSq SINE Alu -19 294 1 1498 247 57 52 chr6 30378904 30379073 -152036169 - L1MDa LINE L1 -2607 3933 3752 2714 85 193 43 chr6 30379073 30379482 -152035760 + LTR61 LTR ERV1 1 505 -90 2237 109 10 0 chr6 30379482 30379785 -152035457 - AluSx SINE Alu -6 306 1 2714 85 193 43 chr6 30379785 30379892 -152035350 + LTR61 LTR ERV1 505 595 0 1498 247 57 52 chr6 30379892 30379924 -152035318 - L1MDa LINE L1 -2788 3752 3722 332 203 28 40 chr6 30379960 30380137 -152035105 + (TTATA)n Simple_repeat Simple_repeat 4 178 0 1114 112 4 4 chr6 30380524 30380732 -152034510 - AluSq SINE Alu -29 284 2 3216 224 57 56 chr6 30380752 30381658 -152033584 - L1MDa LINE L1 -2807 3733 2829 2184 137 0 0 chr6 30381658 30381965 -152033277 + AluSq SINE Alu 1 307 -6 3216 224 57 56 chr6 30381965 30382379 -152032863 - L1MDa LINE L1 -3711 2829 2417 1515 84 21 0 chr6 30382379 30382570 -152032672 - AluSx SINE Alu -117 195 1 3216 224 57 56 chr6 30382570 30382808 -152032434 - L1MDa LINE L1 -4123 2417 2181 2066 137 0 3 chr6 30382808 30383115 -152032127 - AluSg SINE Alu -2 308 3 3216 224 57 56 chr6 30383115 30383591 -152031651 - L1MDa LINE L1 -4359 2181 1696 2781 160 6 23 chr6 30383862 30384338 -152030904 - MER1A DNA MER1_type 0 529 62 564 96 0 0 chr6 30384393 30384466 -152030776 - tRNA-Lys-AAA tRNA tRNA -3 73 1 5429 125 52 19 chr6 30385210 30385652 -152029590 - L1MA3 LINE L1 0 6305 5879 3604 62 136 62 chr6 30385652 30386220 -152029022 + LTR66 LTR ERVL 1 610 0 5429 125 52 19 chr6 30386220 30386707 -152028535 - L1MA3 LINE L1 -426 5879 5346 450 0 0 0 chr6 30386805 30386855 -152028387 + (CA)n Simple_repeat Simple_repeat 2 51 0 302 200 0 0 chr6 30387496 30387546 -152027696 + MER66A LTR ERV1 287 336 -142 267 93 0 0 chr6 30387547 30387590 -152027652 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1089 163 5 10 chr6 30388530 30388732 -152026510 - L1PA16 LINE L1 0 6166 5966 578 56 0 0 chr6 30389174 30389245 -152025997 + tRNA-Arg-CGA tRNA tRNA 1 71 -5 2595 61 0 6 chr6 30389555 30389868 -152025374 - AluSx SINE Alu 0 312 2 207 0 0 0 chr6 30389870 30389893 -152025349 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2130 98 0 0 chr6 30389895 30390170 -152025072 - AluSx SINE Alu -36 276 2 463 162 60 62 chr6 30390172 30390324 -152024918 + L1MC3 LINE L1 6193 7765 -1 261 221 0 0 chr6 30390564 30390632 -152024610 + GA-rich Low_complexity Low_complexity 3 70 0 2194 69 14 28 chr6 30391233 30391551 -152023691 - AluY SINE Alu 0 314 1 2084 136 3 3 chr6 30391618 30391928 -152023314 + AluSx SINE Alu 3 312 0 402 208 68 25 chr6 30392075 30392177 -152023065 - AluJ/FLAM SINE Alu -221 81 12 1750 177 0 13 chr6 30392177 30392482 -152022760 - AluJo SINE Alu -11 301 1 27 0 0 0 chr6 30392482 30392509 -152022733 + AT_rich Low_complexity Low_complexity 1 27 0 2323 93 0 0 chr6 30392509 30392819 -152022423 + AluSx SINE Alu 1 310 -2 609 146 0 146 chr6 30394208 30394372 -152020870 + FLAM_C SINE Alu 1 140 -3 5662 169 13 31 chr6 30394534 30394728 -152020514 - L1MA10 LINE L1 -8 6326 6130 2517 49 3 10 chr6 30394728 30395034 -152020208 - AluY SINE Alu -7 304 1 5662 169 13 31 chr6 30395034 30395886 -152019356 - L1MA10 LINE L1 -204 6130 5300 330 26 0 0 chr6 30395886 30395925 -152019317 + (TG)n Simple_repeat Simple_repeat 1 39 0 5662 169 13 31 chr6 30395925 30396247 -152018995 - L1MA10 LINE L1 -1034 5300 4974 180 0 0 0 chr6 30396342 30396362 -152018880 + (TG)n Simple_repeat Simple_repeat 2 21 0 497 137 0 0 chr6 30396693 30396766 -152018476 + tRNA-Ala-GCG tRNA tRNA 1 73 -2 1767 58 0 62 chr6 30397061 30397303 -152017939 + AluY SINE Alu 80 306 -5 1987 104 39 0 chr6 30397808 30398088 -152017154 + AluSx SINE Alu 1 291 -21 444 118 10 39 chr6 30399130 30399232 -152016010 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 2177 71 58 3 chr6 30401611 30401905 -152013337 - AluSx SINE Alu -2 310 1 297 0 0 0 chr6 30402410 30402443 -152012799 + (T)n Simple_repeat Simple_repeat 1 33 0 524 83 0 0 chr6 30402815 30402887 -152012355 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1070 40 0 0 chr6 30403451 30403577 -152011665 + AluY SINE Alu 157 282 -29 189 0 0 0 chr6 30403577 30403598 -152011644 + (CA)n Simple_repeat Simple_repeat 1 21 0 423 0 0 0 chr6 30403598 30403645 -152011597 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 31 0 0 0 chr6 30404735 30404766 -152010476 + AT_rich Low_complexity Low_complexity 1 31 0 432 192 0 0 chr6 30405051 30405124 -152010118 + tRNA-Phe-TTC tRNA tRNA 1 73 -3 441 287 67 18 chr6 30405154 30405318 -152009924 + MER45B DNA AcHobo 82 253 -787 1123 185 30 17 chr6 30405333 30405565 -152009677 + MER45B DNA AcHobo 805 1039 -1 661 40 0 0 chr6 30406110 30406184 -152009058 - tRNA-Thr-ACT tRNA tRNA -3 74 1 2330 107 0 3 chr6 30406982 30407291 -152007951 - AluSx SINE Alu -4 308 1 5585 196 69 6 chr6 30407300 30407647 -152007595 + Cheshire DNA MER1_type 1080 1404 -1016 312 27 0 0 chr6 30407647 30407684 -152007558 + (TG)n Simple_repeat Simple_repeat 2 38 0 5585 196 69 6 chr6 30407684 30408585 -152006657 + Cheshire DNA MER1_type 1404 2406 -14 832 136 30 77 chr6 30408587 30408756 -152006486 - MLT1A1 LTR MaLR -204 161 1 823 235 30 6 chr6 30408808 30408974 -152006268 + MLT1E LTR MaLR 3 172 -421 207 272 52 0 chr6 30408974 30409110 -152006132 + (TA)n Simple_repeat Simple_repeat 1 143 0 2200 108 24 0 chr6 30409673 30409970 -152005272 - AluSp SINE Alu -9 304 1 236 235 0 0 chr6 30410224 30410275 -152004967 - MER57A LTR ERV1 -52 351 301 439 163 75 0 chr6 30410413 30410493 -152004749 - LTR54 LTR ERV1 -424 86 1 269 208 19 0 chr6 30411140 30411193 -152004049 + MER45 DNA AcHobo 1 54 -899 1995 101 0 4 chr6 30411305 30411583 -152003659 + AluY SINE Alu 2 278 -33 217 0 61 0 chr6 30411583 30411616 -152003626 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1104 131 113 5 chr6 30411901 30412123 -152003119 + L1MA8 LINE L1 5983 6228 -63 28 29 0 0 chr6 30412126 30412161 -152003081 + AT_rich Low_complexity Low_complexity 1 35 0 6497 144 19 29 chr6 30413129 30414364 -152000878 + L1MC1 LINE L1 5101 6321 -12 207 0 0 0 chr6 30414368 30414391 -152000851 + (A)n Simple_repeat Simple_repeat 1 23 0 2467 50 3 31 chr6 30414542 30414859 -152000383 + AluY SINE Alu 1 308 -3 1347 184 76 17 chr6 30415128 30415252 -151999990 + AluJb SINE Alu 1 116 -196 438 20 0 0 chr6 30415252 30415303 -151999939 + (TAA)n Simple_repeat Simple_repeat 2 52 0 1347 184 76 17 chr6 30415303 30415466 -151999776 + AluJb SINE Alu 116 305 -7 337 129 75 54 chr6 30415683 30415776 -151999466 - L1MC1 LINE L1 0 6333 6239 1189 217 53 38 chr6 30415783 30416124 -151999118 - L1M4 LINE L1 -2365 3781 3436 350 250 42 10 chr6 30416173 30416198 -151999044 - L1MC5 LINE L1 -53 7908 7885 2001 131 7 0 chr6 30416198 30416496 -151998746 + AluSx SINE Alu 1 300 -12 350 250 42 10 chr6 30416496 30416566 -151998676 - L1MC5 LINE L1 -76 7885 7810 262 111 0 0 chr6 30416665 30416701 -151998541 + MLT1F1 LTR MaLR 532 567 0 6086 120 32 57 chr6 30416942 30418019 -151997223 - L1MA3 LINE L1 0 6305 5255 21 36 0 0 chr6 30418160 30418188 -151997054 + AT_rich Low_complexity Low_complexity 1 28 0 255 228 51 0 chr6 30418317 30418396 -151996846 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1933 138 18 0 chr6 30419369 30419676 -151995566 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 30420020 30420042 -151995200 + AT_rich Low_complexity Low_complexity 1 22 0 3588 143 48 98 chr6 30420955 30421774 -151993468 + LTR5 LTR ERVK 190 967 -2 5126 119 17 4 chr6 30421776 30422523 -151992719 + HERVK LTR ERVK 1 757 -6486 37069 140 13 15 chr6 30422596 30425746 -151989496 + HERVK LTR ERVK 733 3887 -3530 5262 144 36 42 chr6 30425746 30426721 -151988521 + LTR5 LTR ERVK 1 969 0 37069 140 13 15 chr6 30426721 30430366 -151984876 + HERVK LTR ERVK 3887 7392 -25 5293 136 57 35 chr6 30430375 30431323 -151983919 + LTR5 LTR ERVK 1 969 0 554 81 0 0 chr6 30431323 30431397 -151983845 - AluJ/FLAM SINE Alu -237 75 2 465 149 0 14 chr6 30431574 30431648 -151983594 - tRNA-Lys-AAA tRNA tRNA -3 73 1 564 15 0 0 chr6 30433397 30433462 -151981780 + (CA)n Simple_repeat Simple_repeat 1 65 0 2566 59 0 3 chr6 30433825 30434132 -151981110 - AluY SINE Alu -5 306 1 529 125 0 0 chr6 30434296 30434368 -151980874 - tRNA-Ala-GCG tRNA tRNA -3 72 1 246 240 0 0 chr6 30435531 30435581 -151979661 - tRNA-Phe-TTC tRNA tRNA -26 50 1 2011 145 3 0 chr6 30436520 30436823 -151978419 + AluSx SINE Alu 1 304 -8 411 21 0 0 chr6 30437318 30437366 -151977876 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 2285 101 0 3 chr6 30437368 30437666 -151977576 + AluSg SINE Alu 2 298 -12 268 204 0 0 chr6 30437845 30437894 -151977348 + MER5B DNA MER1_type 127 175 -3 2204 108 3 0 chr6 30438383 30438680 -151976562 + AluSp SINE Alu 1 298 -15 182 213 43 21 chr6 30439648 30439695 -151975547 - MER5A DNA MER1_type -77 112 65 2209 141 0 0 chr6 30439976 30440288 -151974954 - AluSx SINE Alu 0 312 1 1732 141 8 0 chr6 30440768 30441016 -151974226 - AluSx SINE Alu -23 289 40 411 149 0 0 chr6 30441359 30441433 -151973809 + (A)n Simple_repeat Simple_repeat 1 74 0 2654 129 41 10 chr6 30441491 30441909 -151973333 - MER65A LTR ERV1 0 445 15 217 246 15 15 chr6 30442453 30442518 -151972724 + CT-rich Low_complexity Low_complexity 2 66 0 222 179 0 0 chr6 30442539 30442595 -151972647 + T-rich Low_complexity Low_complexity 1 56 0 1977 189 68 16 chr6 30442860 30443299 -151971943 + MLT1C LTR MaLR 6 467 0 1619 266 67 32 chr6 30443350 30443884 -151971358 - ERVL LTR ERVL -364 5400 4848 241 286 76 25 chr6 30444224 30444343 -151970899 + L1ME LINE L1 785 909 -5621 2157 72 0 82 chr6 30444466 30444785 -151970457 - AluYa5 SINE Alu -18 293 1 960 242 117 41 chr6 30444809 30445083 -151970159 + L1ME LINE L1 999 1251 -5289 1452 184 19 42 chr6 30445083 30445393 -151969849 + AluJo SINE Alu 4 306 -6 960 242 117 41 chr6 30445393 30445770 -151969472 + L1ME LINE L1 1251 1714 -4826 890 145 8 0 chr6 30445789 30445920 -151969322 + AluJ SINE Alu 2 133 -169 533 28 0 28 chr6 30445923 30445995 -151969247 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 830 200 0 57 chr6 30446000 30446175 -151969067 + AluJ SINE Alu 134 298 -14 888 264 136 45 chr6 30446176 30446913 -151968329 + L1ME LINE L1 1732 2534 -4006 1048 123 62 47 chr6 30446917 30447128 -151968114 + L1MC/D LINE L1 5254 5467 -775 1992 87 3 61 chr6 30447331 30447642 -151967600 + AluSg SINE Alu 18 310 0 180 258 0 32 chr6 30448119 30448181 -151967061 - MER5A DNA MER1_type -26 163 104 515 125 0 0 chr6 30448953 30449025 -151966217 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 4470 155 50 11 chr6 30449219 30450006 -151965236 + Tigger7 DNA MER2_type 25 841 -1646 2028 123 17 7 chr6 30450125 30450425 -151964817 + AluSx SINE Alu 1 303 -9 811 237 0 0 chr6 30450947 30451099 -151964143 + AluSg/x SINE Alu 132 283 -27 343 168 35 0 chr6 30451099 30451242 -151964000 + (TA)n Simple_repeat Simple_repeat 1 148 0 1623 201 7 0 chr6 30451486 30451789 -151963453 - AluJo SINE Alu -7 305 1 3653 172 40 37 chr6 30452169 30452878 -151962364 + MER50 LTR ERV1 1 711 -23 1699 118 0 12 chr6 30452963 30453209 -151962033 + AluSg SINE Alu 60 302 -8 29 0 0 0 chr6 30453933 30453962 -151961280 + AT_rich Low_complexity Low_complexity 1 29 0 522 111 0 0 chr6 30454114 30454186 -151961056 - tRNA-Ala-GCG tRNA tRNA -3 72 1 451 245 107 43 chr6 30454487 30454740 -151960502 + L1MC4a LINE L1 6089 6357 -1451 226 274 0 0 chr6 30454936 30454987 -151960255 - tRNA-Lys-AAA tRNA tRNA -6 70 20 232 214 18 0 chr6 30455061 30455117 -151960125 + (TA)n Simple_repeat Simple_repeat 1 57 0 2008 111 11 4 chr6 30455129 30455409 -151959833 - AluSx SINE Alu -17 295 14 2489 65 7 3 chr6 30456036 30456343 -151958899 + AluSp SINE Alu 1 308 -5 259 289 22 11 chr6 30457095 30457185 -151958057 - MIR SINE MIR -150 112 22 1980 141 0 3 chr6 30457405 30457702 -151957540 - AluSx SINE Alu -12 300 5 2686 42 0 0 chr6 30457720 30458030 -151957212 - AluY SINE Alu 0 311 2 931 141 25 6 chr6 30459122 30459285 -151955957 + Tigger7 DNA MER2_type 347 512 -1975 * 1237 119 115 33 chr6 30459258 30459501 -151955741 + Tigger7 DNA MER2_type 388 650 -1837 298 253 42 11 chr6 30459783 30459878 -151955364 + L1MD3 LINE L1 7890 7987 -8 1910 121 35 0 chr6 30459906 30460188 -151955054 + AluSg SINE Alu 1 292 -18 2392 92 3 0 chr6 30460194 30460498 -151954744 + AluSp SINE Alu 1 305 -8 259 105 35 0 chr6 30460794 30460851 -151954391 + (TA)n Simple_repeat Simple_repeat 2 60 0 2193 133 117 8 chr6 30560863 30561231 -151854011 + MSTA LTR MaLR 21 428 0 499 270 0 0 chr6 30563332 30563443 -151851799 - MER81 DNA DNA -1 113 3 2088 167 27 3 chr6 30563628 30563993 -151851249 + MLT1B LTR MaLR 1 374 -16 1423 230 18 0 chr6 30565121 30565464 -151849778 - L1MB5 LINE L1 -9 6165 5817 2341 103 3 0 chr6 30566455 30566755 -151848487 - AluSp SINE Alu -12 301 1 4091 240 66 12 chr6 30567356 30568703 -151846539 - L1M4 LINE L1 -2507 3639 2220 3389 254 109 21 chr6 30568717 30568865 -151846377 + L1M4c LINE L1 906 1040 -5344 2845 19 0 0 chr6 30568865 30569176 -151846066 + AluYa5 SINE Alu 1 311 0 3389 254 109 21 chr6 30569176 30570442 -151844800 + L1M4c LINE L1 1040 2444 -3940 1333 135 4 58 chr6 30570434 30570694 -151844548 + L1MA5 LINE L1 5814 6059 -241 * 2834 130 2 14 chr6 30570691 30571115 -151844127 + L1P3 LINE L1 1 419 -6042 1044 197 19 5 chr6 30571128 30571336 -151843906 + MER20 DNA MER1_type 1 211 -8 3842 264 138 26 chr6 30571363 30572050 -151843192 - L2 LINE L2 -537 2777 2168 1721 176 90 9 chr6 30572050 30572396 -151842846 - MLT1A2 LTR MaLR 0 374 1 3842 264 138 26 chr6 30572396 30573333 -151841909 - L2 LINE L2 -1146 2168 971 461 256 63 19 chr6 30573350 30573557 -151841685 - L2 LINE L2 -2571 743 528 253 279 0 0 chr6 30573612 30573680 -151841562 - MIR SINE MIR -110 152 85 752 188 188 0 chr6 30575214 30575400 -151839842 - MIR SINE MIR -27 235 15 363 306 35 21 chr6 30575777 30575921 -151839321 - MIR3 SINE MIR -32 176 31 1104 235 35 53 chr6 30576076 30576395 -151838847 - MER93a LTR ERV1 0 402 90 231 402 9 0 chr6 30576512 30576624 -151838618 + L3 LINE CR1 988 1100 -477 246 288 0 0 chr6 30578406 30578472 -151836770 + GA-rich Low_complexity Low_complexity 1 66 0 316 209 99 11 chr6 30580058 30580149 -151835093 + MARNA DNA Mariner 154 252 -334 5227 173 20 20 chr6 30580159 30580246 -151834996 + MER49 LTR ERV1 10 96 -827 2013 152 0 0 chr6 30580246 30580548 -151834694 + AluSx SINE Alu 1 302 -10 5227 173 20 20 chr6 30580548 30581374 -151833868 + MER49 LTR ERV1 95 923 0 6279 62 5 0 chr6 30581786 30582562 -151832680 + LTR17 LTR ERV1 1 780 0 218 237 17 0 chr6 30584044 30584103 -151831139 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 2032 172 9 0 chr6 30584198 30584547 -151830695 - MER47A DNA MER2_type 0 366 15 2311 192 24 2 chr6 30585103 30585520 -151829722 - MSTB LTR MaLR 0 426 1 4485 116 8 0 chr6 30585556 30586186 -151829056 + MER41B LTR ERV1 1 635 0 310 269 141 39 chr6 30586537 30586693 -151828549 + L1ME3A LINE L1 5725 5896 -274 3396 142 11 9 chr6 30586704 30587247 -151827995 - LTR10A LTR ERV1 -65 544 1 201 208 0 21 chr6 30587695 30587743 -151827499 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 21 0 0 0 chr6 30587774 30587795 -151827447 + AT_rich Low_complexity Low_complexity 1 21 0 306 253 62 80 chr6 30587795 30587869 -151827373 + L1ME LINE L1 5592 5516 -605 1861 119 50 4 chr6 30587869 30588024 -151827218 - AluSx SINE Alu -21 291 116 233 29 0 29 chr6 30588024 30588059 -151827183 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1861 119 50 4 chr6 30588059 30588181 -151827061 - AluSx SINE Alu -196 116 1 306 253 62 80 chr6 30588181 30588318 -151826924 + L1ME LINE L1 5515 5653 -468 359 274 66 44 chr6 30589355 30589691 -151825551 + L1ME LINE L1 1383 1534 -4889 3656 133 111 32 chr6 30589691 30590191 -151825051 + Tigger2 DNA MER2_type 3 573 -2145 2019 116 20 17 chr6 30590191 30590492 -151824750 - AluSx SINE Alu -8 304 3 3656 133 111 32 chr6 30590492 30590678 -151824564 + Tigger2 DNA MER2_type 573 743 -1975 1662 151 0 4 chr6 30590744 30591003 -151824239 + Tigger2 DNA MER2_type 2461 2718 0 1613 251 52 12 chr6 30591004 30591502 -151823740 + L1MC4a LINE L1 6706 7223 -585 2044 199 79 49 chr6 30591517 30591927 -151823315 + L1ME2 LINE L1 5269 5665 -499 1053 83 0 0 chr6 30591927 30592072 -151823170 + (TTC)n Simple_repeat Simple_repeat 2 146 0 1734 129 8 8 chr6 30592078 30592334 -151822908 - AluJb SINE Alu -52 260 5 2044 199 79 49 chr6 30592334 30592525 -151822717 + L1ME2 LINE L1 5669 5895 -269 2393 95 0 7 chr6 30592532 30592838 -151822404 + AluSc SINE Alu 1 304 -5 241 266 0 0 chr6 30593295 30593359 -151821883 + L2 LINE L2 3208 3271 -1 207 0 0 0 chr6 30593766 30593789 -151821453 + (TG)n Simple_repeat Simple_repeat 2 24 0 2529 78 0 0 chr6 30593919 30594227 -151821015 + AluSg SINE Alu 1 308 -2 208 312 92 9 chr6 30595334 30595432 -151819810 + MIR3 SINE MIR 89 198 -10 261 0 0 0 chr6 30595432 30595461 -151819781 + (CA)n Simple_repeat Simple_repeat 2 30 0 2494 185 43 50 chr6 30595490 30595581 -151819661 + Tigger7 DNA MER2_type 2 92 -2495 2121 122 0 14 chr6 30595581 30595876 -151819366 + AluSx SINE Alu 1 291 -21 2494 185 43 50 chr6 30595876 30596463 -151818779 + Tigger7 DNA MER2_type 92 682 -1905 1658 126 24 4 chr6 30596463 30596709 -151818533 + AluSx SINE Alu 51 301 -11 2494 185 43 50 chr6 30596709 30596761 -151818481 + Tigger7 DNA MER2_type 682 2587 0 214 151 57 0 chr6 30597121 30597174 -151818068 + CT-rich Low_complexity Low_complexity 5 60 0 2155 75 21 0 chr6 30597271 30597581 -151817661 + AluSp SINE Alu 1 316 0 25 31 0 0 chr6 30598810 30598842 -151816400 + GC_rich Low_complexity Low_complexity 1 32 0 2462 88 0 0 chr6 30599067 30599372 -151815870 + AluSq SINE Alu 3 307 -6 1272 133 6 0 chr6 30599430 30599611 -151815631 + AluSx SINE Alu 1 182 -130 1654 199 0 10 chr6 30599682 30599989 -151815253 + AluJo SINE Alu 1 304 -8 1835 90 110 41 chr6 30600040 30600330 -151814912 - AluSg SINE Alu 0 310 1 1164 53 20 0 chr6 30600355 30600507 -151814735 - L1PA4 LINE L1 0 6155 6001 2467 85 3 0 chr6 30600552 30600859 -151814383 - AluSp SINE Alu -1 312 5 2309 111 0 3 chr6 30600923 30601230 -151814012 - AluSx SINE Alu -6 306 1 1177 261 65 84 chr6 30601402 30601924 -151813318 + HERVL40 LTR ERVL 460 971 -4559 992 234 109 13 chr6 30653216 30653559 -151761683 + LTR43 LTR ERV1 176 459 -53 26 30 0 0 chr6 30654372 30654405 -151760837 + AT_rich Low_complexity Low_complexity 1 33 0 2911 314 65 23 chr6 30655281 30657311 -151757931 + ERVL LTR ERVL 873 3043 -1953 612 316 42 0 chr6 30657400 30657707 -151757535 + ERVL LTR ERVL 3201 3520 -2244 * 1382 336 40 46 chr6 30657705 30658924 -151756318 + ERVL LTR ERVL 3688 5260 -504 474 334 83 11 chr6 30658932 30659306 -151755936 + LTR16B LTR ERVL 62 462 -2 441 167 0 0 chr6 30659418 30659496 -151755746 + MLT1F LTR MaLR 463 540 -2 252 116 23 0 chr6 30659846 30659889 -151755353 - MADE1 DNA Mariner -2 78 35 2019 210 80 15 chr6 30660916 30661444 -151753798 + MLT1F1 LTR MaLR 6 567 0 1635 186 0 11 chr6 30661520 30661805 -151753437 - AluJb SINE Alu -22 290 9 23 0 0 0 chr6 30661816 30661839 -151753403 + AT_rich Low_complexity Low_complexity 1 23 0 1968 205 80 50 chr6 30662021 30662514 -151752728 + MLT1E3 LTR MaLR 43 557 -67 1184 229 19 52 chr6 30662514 30662824 -151752418 + AluJo SINE Alu 1 300 -2 1968 205 80 50 chr6 30662824 30662895 -151752347 + MLT1E3 LTR MaLR 557 624 0 231 319 56 0 chr6 30663130 30663202 -151752040 - L2 LINE L2 -553 2761 2686 2475 47 30 0 chr6 30663906 30664204 -151751038 + AluY SINE Alu 1 307 -4 189 107 0 0 chr6 30664256 30664284 -151750958 + (A)n Simple_repeat Simple_repeat 1 28 0 198 171 0 0 chr6 30664329 30664370 -151750872 + GA-rich Low_complexity Low_complexity 2 42 0 1245 67 0 0 chr6 30664370 30664534 -151750708 + (GAA)n Simple_repeat Simple_repeat 2 165 0 216 0 0 0 chr6 30664780 30664804 -151750438 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 27 49 0 0 chr6 30668109 30668150 -151747092 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr6 30668187 30668207 -151747035 + (TG)n Simple_repeat Simple_repeat 1 20 0 589 315 99 32 chr6 30668795 30669198 -151746044 - L1MC5 LINE L1 -178 7783 7354 814 203 28 46 chr6 30669616 30669833 -151745409 + MER20 DNA MER1_type 7 219 0 26 50 0 0 chr6 30670833 30670873 -151744369 + AT_rich Low_complexity Low_complexity 1 40 0 3306 197 35 16 chr6 30671012 30671535 -151743707 + L1MB3 LINE L1 4903 5414 -769 3306 183 41 1 chr6 30671535 30672192 -151743050 + L1MB3 LINE L1 5493 6175 -8 3306 197 35 16 chr6 30672192 30672234 -151743008 + L1MB3 LINE L1 5414 6175 -8 479 284 108 42 chr6 30672234 30672811 -151742431 + L2 LINE L2 2564 3178 -135 2283 177 102 14 chr6 30672811 30672838 -151742404 - MLT2B3 LTR ERVL -8 546 523 380 20 0 20 chr6 30672838 30672888 -151742354 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2283 177 102 14 chr6 30672888 30673362 -151741880 - MLT2B3 LTR ERVL -31 523 1 268 297 126 0 chr6 30673370 30673481 -151741761 + L2 LINE L2 3189 3313 0 1706 193 0 13 chr6 30673575 30673875 -151741367 - AluJb SINE Alu -16 296 1 2043 114 3 10 chr6 30674063 30674353 -151740889 - AluSx SINE Alu -24 288 1 305 291 34 26 chr6 30674380 30674497 -151740745 + L1ME4a LINE L1 5839 5956 -165 2050 158 0 3 chr6 30674512 30674822 -151740420 + AluSx SINE Alu 1 309 -3 995 161 0 0 chr6 30675091 30675234 -151740008 + FAM SINE Alu 14 156 -29 26 50 0 0 chr6 30675466 30675506 -151739736 + AT_rich Low_complexity Low_complexity 1 40 0 1827 197 23 32 chr6 30676247 30676683 -151738559 - L1MB5 LINE L1 0 6174 5743 240 86 0 0 chr6 30676788 30676823 -151738419 + (CA)n Simple_repeat Simple_repeat 1 35 0 369 307 9 35 chr6 30676883 30676997 -151738245 + L1MC4 LINE L1 6595 6705 -1337 * 373 250 10 21 chr6 30676915 30677011 -151738231 - L1MC4 LINE L1 -1339 6703 6609 2288 221 31 23 chr6 30677011 30677664 -151737578 - L1M4c LINE L1 -4730 1654 997 618 241 55 36 chr6 30678113 30678333 -151736909 - L1ME3A LINE L1 -15 6155 5932 500 265 93 48 chr6 30678358 30678606 -151736636 - L1ME3A LINE L1 -325 5845 5586 627 228 57 76 chr6 30678625 30678994 -151736248 + L1MC5 LINE L1 7091 7452 -509 1734 190 111 11 chr6 30680627 30681069 -151734173 + L1MB2 LINE L1 5685 6170 -1 215 280 80 30 chr6 30681197 30681297 -151733945 + MER5A DNA MER1_type 22 126 -63 754 294 139 20 chr6 30681322 30681957 -151733285 + HAL1 LINE L1 1798 2507 0 498 288 141 0 chr6 30683170 30683340 -151731902 - MIR SINE MIR -39 223 30 1743 198 33 16 chr6 30688022 30688601 -151726641 + L1M3 LINE L1 4899 5490 -693 387 0 0 0 chr6 30688601 30688644 -151726598 + (CA)n Simple_repeat Simple_repeat 2 44 0 1743 198 33 16 chr6 30688644 30688773 -151726469 + L1M3 LINE L1 5490 5615 -568 2165 130 3 0 chr6 30688773 30689073 -151726169 + AluY SINE Alu 1 301 -10 188 35 35 0 chr6 30690243 30690272 -151724970 + (GGAGA)n Simple_repeat Simple_repeat 2 31 0 813 59 0 0 chr6 30691983 30692084 -151723158 + HY3 scRNA scRNA 1 101 0 296 256 13 0 chr6 30692091 30692169 -151723073 + L1MB7 LINE L1 6048 6126 -58 248 246 0 0 chr6 30692815 30692872 -151722370 + L1MB7 LINE L1 6111 6167 -17 720 206 34 17 chr6 30692957 30693132 -151722110 + MER5B DNA MER1_type 1 178 0 189 0 0 0 chr6 30693199 30693220 -151722022 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 707 235 13 20 chr6 30693220 30693369 -151721873 - FRAM SINE Alu -18 148 1 225 268 0 18 chr6 30695001 30695057 -151720185 + GA-rich Low_complexity Low_complexity 1 55 0 409 272 0 75 chr6 30695322 30695469 -151719773 - L1ME1 LINE L1 -4 6162 6027 2341 33 15 105 chr6 30695667 30695999 -151719243 - AluY SINE Alu -9 302 1 2482 78 0 3 chr6 30695999 30696307 -151718935 - AluSq SINE Alu -2 311 5 818 191 34 28 chr6 30696406 30696584 -151718658 + FRAM SINE Alu 1 176 0 354 129 0 0 chr6 30697807 30697869 -151717373 + (TG)n Simple_repeat Simple_repeat 1 62 0 270 320 108 46 chr6 30698897 30699269 -151715973 + L2 LINE L2 2499 2893 -421 660 211 0 8 chr6 30701597 30701720 -151713522 + FLAM_C SINE Alu 3 124 -19 869 327 30 16 chr6 30701837 30702265 -151712977 - LTR33 LTR ERVL -65 456 23 2276 124 0 0 chr6 30702379 30702677 -151712565 + AluSx SINE Alu 1 298 -14 1639 176 108 3 chr6 30705559 30705900 -151709342 + Tigger1 DNA MER2_type 2042 2418 0 1531 267 104 16 chr6 30707120 30707742 -151707500 + L2 LINE L2 18 694 -2620 1806 232 114 14 chr6 30707749 30708320 -151706922 + MLT1E2 LTR MaLR 1 626 0 416 265 90 0 chr6 30708321 30708510 -151706732 + L2 LINE L2 698 903 -2411 1845 292 57 23 chr6 30708619 30709359 -151705883 + L2 LINE L2 892 1656 -1658 880 318 81 11 chr6 30709359 30709793 -151705449 + LTR16B LTR ERVL 1 464 0 199 250 73 0 chr6 30709865 30709933 -151705309 - L2 LINE L2 -184 3088 3016 3044 324 51 23 chr6 30710478 30712576 -151702666 + HERV16 LTR ERVL 853 3096 -1900 670 378 56 26 chr6 30713045 30714116 -151701126 + HERV16 LTR ERVL 4103 5205 -280 720 298 52 22 chr6 30714137 30714503 -151700739 + LTR16B LTR ERVL 62 438 -26 448 162 0 0 chr6 30714630 30714704 -151700538 + MLT1F1 LTR MaLR 491 564 -3 287 316 11 0 chr6 30714814 30714909 -151700333 + T-rich Low_complexity Low_complexity 2 97 0 222 184 40 13 chr6 30714910 30714986 -151700256 + CT-rich Low_complexity Low_complexity 1 78 0 2198 82 10 13 chr6 30715159 30715462 -151699780 + AluY SINE Alu 1 302 -9 519 299 143 23 chr6 30715548 30715939 -151699303 + L1ME3A LINE L1 5528 5965 -205 394 157 0 0 chr6 30716831 30716901 -151698341 - MER41B LTR ERV1 -86 549 480 6422 88 18 3 chr6 30717244 30718758 -151696484 + L1PA10 LINE L1 4619 6168 0 1942 234 91 19 chr6 30718842 30718935 -151696307 + MLT1F1 LTR MaLR 15 100 -467 2065 139 34 47 chr6 30718935 30719315 -151695927 + THE1C LTR MaLR 1 375 0 1942 234 91 19 chr6 30719315 30719737 -151695505 + MLT1F1 LTR MaLR 100 567 0 1215 216 3 21 chr6 30719810 30720101 -151695141 - AluJb SINE Alu -25 287 2 1665 238 68 55 chr6 30720265 30720799 -151694443 + MLT1E3 LTR MaLR 3 547 -77 1223 232 38 41 chr6 30720799 30721092 -151694150 + AluJo SINE Alu 1 292 -10 1665 238 68 55 chr6 30721092 30721161 -151694081 + MLT1E3 LTR MaLR 547 614 -10 42058 57 14 1 chr6 30721339 30727386 -151687856 + L1PA6 LINE L1 22 6148 -6 338 93 19 0 chr6 30728074 30728128 -151687114 - MER41A LTR ERV1 -88 466 412 6075 100 18 7 chr6 30728496 30730029 -151685213 + L1PA10 LINE L1 4624 6166 -2 2034 243 44 24 chr6 30730107 30730206 -151685036 + MLT1F1 LTR MaLR 6 102 -465 2199 149 5 24 chr6 30730206 30730588 -151684654 + THE1C LTR MaLR 1 375 0 2034 243 44 24 chr6 30730588 30731039 -151684203 + MLT1F1 LTR MaLR 102 567 0 1485 179 3 14 chr6 30731091 30731405 -151683837 - AluJb SINE Alu 0 311 1 1910 242 88 21 chr6 30731578 30732103 -151683139 + MLT1E3 LTR MaLR 14 573 -51 205 288 163 0 chr6 30732333 30732413 -151682829 - L2 LINE L2 -554 2760 2668 218 137 0 39 chr6 30734423 30734474 -151680768 + (CGGGGG)n Simple_repeat Simple_repeat 5 53 0 439 323 71 42 chr6 30734656 30735244 -151679998 + HERVL LTR ERVL 4335 4939 -715 888 304 39 11 chr6 30735500 30735881 -151679361 + LTR16B LTR ERVL 69 460 -4 383 205 0 0 chr6 30735993 30736071 -151679171 + MLT1F1 LTR MaLR 488 565 -2 204 125 0 0 chr6 30736211 30736243 -151678999 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 345 331 116 3 chr6 30736499 30736783 -151678459 + L1ME3A LINE L1 5554 5869 -301 243 0 0 0 chr6 30737049 30737076 -151678166 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2056 117 0 0 chr6 30737078 30737361 -151677881 - AluSq SINE Alu -30 283 1 2093 234 51 22 chr6 30738466 30739012 -151676230 + MLT1F1 LTR MaLR 6 567 0 22 0 0 0 chr6 30739090 30739112 -151676130 + AT_rich Low_complexity Low_complexity 1 22 0 2222 246 68 19 chr6 30739211 30739804 -151675438 + MLT1E3 LTR MaLR 1 622 -2 456 264 16 8 chr6 30739963 30740088 -151675154 - L2 LINE L2 0 3313 3188 308 324 78 28 chr6 30740096 30740275 -151674967 - L2 LINE L2 -549 2765 2578 2223 49 19 26 chr6 30740517 30740824 -151674418 + AluY SINE Alu 1 305 -6 1536 175 0 32 chr6 30740894 30741209 -151674033 + AluJo SINE Alu 1 305 -7 2076 167 36 8 chr6 30744088 30744448 -151670794 + MSTA LTR MaLR 1 370 -58 28 0 0 0 chr6 30744477 30744505 -151670737 + AT_rich Low_complexity Low_complexity 1 28 0 448 133 0 0 chr6 30745351 30745428 -151669814 + MSTA LTR MaLR 291 428 0 2806 168 8 0 chr6 30745428 30745903 -151669339 + MSTB1-int LTR MaLR 1 479 -1172 2230 242 33 28 chr6 30745912 30746483 -151668759 + MSTB1-int LTR MaLR 1078 1651 0 1840 206 66 7 chr6 30746483 30746891 -151668351 + MSTB1 LTR MaLR 1 432 0 528 275 75 12 chr6 30746891 30747051 -151668191 - MER21B LTR ERV1 -675 188 19 3700 258 53 42 chr6 30747157 30748062 -151667180 - MER21B-int LTR ERV1 -58 4133 3209 2170 109 3 0 chr6 30748062 30748364 -151666878 - AluSx SINE Alu -9 303 1 3700 258 53 42 chr6 30748364 30748710 -151666532 - MER21B-int LTR ERV1 -982 3209 2868 4722 245 118 26 chr6 30748711 30750632 -151664610 + L1M4 LINE L1 3251 5348 -798 566 263 17 6 chr6 30750613 30750788 -151664454 + L1MC/D LINE L1 4842 5018 -1128 * 600 177 0 0 chr6 30750815 30750911 -151664331 + FLAM_A SINE Alu 1 96 -46 1986 209 75 24 chr6 30750924 30751652 -151663590 + L1MC/D LINE L1 4992 5765 -594 896 233 184 4 chr6 30751658 30752018 -151663224 - Charlie1 DNA MER1_type -994 1767 38 602 269 9 50 chr6 30752223 30752442 -151662800 + L1PB4 LINE L1 5946 6155 -1 261 151 0 0 chr6 30752496 30752549 -151662693 + (TG)n Simple_repeat Simple_repeat 2 54 0 25 65 0 0 chr6 30753686 30753732 -151661510 + AT_rich Low_complexity Low_complexity 1 46 0 443 290 131 11 chr6 30753732 30753915 -151661327 - MIR SINE MIR -39 223 19 1538 346 33 32 chr6 30757265 30758332 -151656910 + HERVL LTR ERVL 2310 3096 -1900 260 266 38 0 chr6 30758348 30758427 -151656815 + HERVL LTR ERVL 3443 3524 -2240 * 1123 323 58 35 chr6 30758426 30759327 -151655915 + HERVL LTR ERVL 3693 4917 -737 737 304 49 23 chr6 30759641 30760029 -151655213 + LTR16B LTR ERVL 62 459 -5 361 178 14 0 chr6 30760147 30760220 -151655022 + MLT1F1 LTR MaLR 491 564 -3 289 214 28 39 chr6 30760364 30760542 -151654700 + CT-rich Low_complexity Low_complexity 1 176 0 831 115 0 0 chr6 30760817 30760930 -151654312 + AluSx SINE Alu 1 113 -199 502 164 135 10 chr6 30760939 30761043 -151654199 - LTR3b LTR ERVK -5 432 316 * 1062 53 8 0 chr6 30761042 30761174 -151654068 - LTR3b LTR ERVK -365 135 3 1258 113 6 0 chr6 30761175 30761390 -151653852 + AluSx SINE Alu 107 322 0 408 283 143 31 chr6 30761390 30761683 -151653559 + L1ME3A LINE L1 5547 5872 -298 517 108 0 0 chr6 30761830 30761913 -151653329 + L1 LINE L1 4762 4844 -1302 292 67 100 17 chr6 30762885 30762945 -151652297 - MER41A LTR ERV1 -88 466 402 6353 94 9 9 chr6 30763299 30764825 -151650417 + L1PA10 LINE L1 4619 6144 -24 252 0 0 0 chr6 30764825 30764853 -151650389 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 6353 94 9 9 chr6 30764853 30764879 -151650363 + L1PA10 LINE L1 6143 6168 0 401 262 39 0 chr6 30764936 30765035 -151650207 + MLT1F1 LTR MaLR 6 108 -459 576 185 31 62 chr6 30765035 30765165 -151650077 + THE1C LTR MaLR 1 126 -249 1793 92 16 0 chr6 30765183 30765433 -151649809 - L1PA10 LINE L1 -136 6032 5779 1361 123 5 19 chr6 30765433 30765644 -151649598 + THE1C LTR MaLR 168 375 0 1936 214 42 20 chr6 30765645 30766098 -151649144 + MLT1F1 LTR MaLR 105 567 0 1562 171 14 11 chr6 30766170 30766456 -151648786 - AluJb SINE Alu -25 287 1 2097 211 80 66 chr6 30766629 30767152 -151648090 + MLT1E3 LTR MaLR 14 548 -76 1234 214 24 14 chr6 30767152 30767441 -151647801 + AluJo SINE Alu 1 292 -20 2097 211 80 66 chr6 30767441 30767520 -151647722 + MLT1E3 LTR MaLR 548 624 0 227 278 206 22 chr6 30767748 30767928 -151647314 - L2 LINE L2 -549 2765 2553 23 68 0 0 chr6 30769293 30769337 -151645905 + GC_rich Low_complexity Low_complexity 1 44 0 2101 112 23 3 chr6 30772775 30773078 -151642164 - AluSc SINE Alu 0 309 1 215 330 70 17 chr6 30773542 30773657 -151641585 - L2 LINE L2 -2 3311 3191 929 120 44 85 chr6 30773660 30773892 -151641350 - MER30B DNA MER1_type 0 230 1 1249 296 108 9 chr6 30773939 30774643 -151640599 - L2 LINE L2 -166 3147 2381 395 266 92 20 chr6 30774854 30775126 -151640116 + L1MEc LINE L1 2028 2297 -3918 213 39 0 0 chr6 30775126 30775152 -151640090 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 395 266 92 20 chr6 30775152 30775249 -151639993 + L1MEc LINE L1 2297 2386 -3829 850 213 38 0 chr6 30775330 30775490 -151639752 - FRAM SINE Alu -12 164 1 490 210 179 31 chr6 30776002 30776164 -151639078 + MER20 DNA MER1_type 32 217 -2 328 267 180 16 chr6 30776170 30776304 -151638938 - MIR SINE MIR -59 149 14 1581 183 48 102 chr6 30777795 30778102 -151637140 + L1P5 LINE L1 4904 5226 -925 2368 93 0 0 chr6 30778102 30778414 -151636828 + AluSx SINE Alu 1 312 0 1581 183 48 102 chr6 30778414 30778654 -151636588 + L1P5 LINE L1 5226 5420 -731 3001 182 43 19 chr6 30778654 30779325 -151635917 + L1MB4 LINE L1 5493 6179 -1 1581 183 48 102 chr6 30779325 30779362 -151635880 + L1P5 LINE L1 5420 5457 -694 480 302 94 38 chr6 30779362 30779940 -151635302 + L2 LINE L2 2569 3181 -132 1659 219 135 9 chr6 30779940 30779977 -151635265 - MLT2B3 LTR ERVL -3 551 520 716 40 56 0 chr6 30779977 30780102 -151635140 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 1659 219 135 9 chr6 30780102 30780349 -151634893 - MLT2B3 LTR ERVL -34 520 305 300 83 0 0 chr6 30780349 30780397 -151634845 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 1659 219 135 9 chr6 30780397 30780532 -151634710 - MLT2B3 LTR ERVL -249 305 78 1454 169 47 7 chr6 30780565 30780843 -151634399 - AluJb SINE Alu -19 293 5 305 309 134 56 chr6 30780853 30781094 -151634148 + L1ME4a LINE L1 5636 5910 -211 1599 141 8 8 chr6 30781094 30781350 -151633892 + AluSx SINE Alu 35 290 -22 305 309 134 56 chr6 30781350 30781428 -151633814 + L1ME4a LINE L1 5910 5980 -141 797 204 72 0 chr6 30781700 30781852 -151633390 + FAM SINE Alu 1 163 -12 230 93 74 0 chr6 30782077 30782131 -151633111 + (TA)n Simple_repeat Simple_repeat 1 58 0 1792 211 19 24 chr6 30782884 30783310 -151631932 - L1MB5 LINE L1 -8 6166 5743 203 161 0 0 chr6 30783351 30783382 -151631860 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 3719 226 69 75 chr6 30783406 30784940 -151630302 - L1M4c LINE L1 -4696 1950 376 1877 176 0 0 chr6 30784940 30785252 -151629990 - AluJb SINE Alu 0 312 1 3719 226 69 75 chr6 30785252 30785542 -151629700 - L1M4c LINE L1 -6270 376 86 224 231 62 31 chr6 30785544 30785609 -151629633 + MER5A DNA MER1_type 80 157 -32 2138 87 13 0 chr6 30785610 30785908 -151629334 - AluSp SINE Alu -11 302 1 246 331 75 38 chr6 30786069 30786229 -151629013 - L2 LINE L2 -4 3309 3144 447 331 77 23 chr6 30786331 30786683 -151628559 - L1MEc LINE L1 -4612 1834 1398 2019 179 46 73 chr6 30786697 30787260 -151627982 + LTR10A LTR ERV1 1 548 -61 720 258 0 6 chr6 30787400 30787578 -151627664 + MLT1D LTR MaLR 1 177 -328 246 279 74 42 chr6 30787611 30787826 -151627416 - L1M4 LINE L1 -2203 4645 4424 535 261 69 57 chr6 30787857 30788263 -151626979 + L1MC5 LINE L1 7091 7501 -460 372 22 0 0 chr6 30788263 30788308 -151626934 + (T)n Simple_repeat Simple_repeat 1 45 0 360 263 160 62 chr6 30790519 30791043 -151624199 - L1M4 LINE L1 -5472 1377 707 52 50 0 0 chr6 30791353 30791433 -151623809 + GC_rich Low_complexity Low_complexity 1 80 0 25 95 0 0 chr6 30791482 30791556 -151623686 + GC_rich Low_complexity Low_complexity 1 74 0 207 180 31 87 chr6 30791656 30791817 -151623425 + (CCGGG)n Simple_repeat Simple_repeat 5 156 0 30 59 0 0 chr6 30791822 30791873 -151623369 + GC_rich Low_complexity Low_complexity 1 51 0 216 91 18 55 chr6 30791880 30791935 -151623307 + (CGGG)n Simple_repeat Simple_repeat 1 53 0 1988 210 51 9 chr6 30793852 30794319 -151620923 + L1MB2 LINE L1 5685 6171 0 552 277 72 18 chr6 30794577 30794855 -151620387 + HAL1 LINE L1 1800 2092 -415 38 22 0 0 chr6 30795483 30795528 -151619714 + AT_rich Low_complexity Low_complexity 1 45 0 421 251 30 99 chr6 30795568 30795831 -151619411 + HAL1 LINE L1 2263 2507 0 24 77 0 0 chr6 30796971 30797023 -151618219 + AT_rich Low_complexity Low_complexity 1 52 0 390 295 131 11 chr6 30797023 30797206 -151618036 - MIR SINE MIR -39 223 19 364 241 30 91 chr6 30798903 30799135 -151616107 - L1MC4a LINE L1 -1812 5996 5779 486 284 109 35 chr6 30799261 30799553 -151615689 + L1ME3 LINE L1 5624 5937 -233 1281 236 0 4 chr6 30799557 30799837 -151615405 + AluJb SINE Alu 1 279 -33 207 0 0 0 chr6 30799840 30799863 -151615379 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 242 259 0 0 chr6 30799953 30800007 -151615235 - Tigger6 DNA MER2_type -1028 55 2 1883 267 92 11 chr6 30800527 30801224 -151614018 + L1ME2 LINE L1 5411 6163 -1 25 0 0 0 chr6 30801252 30801277 -151613965 + AT_rich Low_complexity Low_complexity 1 25 0 6135 171 24 39 chr6 30801293 30801571 -151613671 + L1MA4A LINE L1 3971 4252 -2051 2417 58 0 19 chr6 30801571 30801881 -151613361 + AluY SINE Alu 1 304 -7 6135 171 24 39 chr6 30801881 30802137 -151613105 + L1MA4A LINE L1 4252 4510 -1793 792 197 0 0 chr6 30802137 30802269 -151612973 + FLAM_C SINE Alu 2 133 0 6135 171 24 39 chr6 30802269 30803941 -151611301 + L1MA4A LINE L1 4510 6137 -166 2281 76 0 35 chr6 30803941 30804256 -151610986 + AluY SINE Alu 1 304 -7 6135 171 24 39 chr6 30804256 30804421 -151610821 + L1MA4A LINE L1 6137 6303 0 227 182 0 109 chr6 30804856 30804911 -151610331 + MLT1B LTR MaLR 1 49 -341 * 1058 158 21 16 chr6 30804902 30805092 -151610150 + MLT1B LTR MaLR 200 390 0 186 299 119 9 chr6 30805578 30805695 -151609547 - MIR SINE MIR -88 120 21 2330 99 0 3 chr6 30807699 30808002 -151607240 + AluSq SINE Alu 1 302 -11 351 315 163 0 chr6 30808033 30808217 -151607025 - MIR SINE MIR -27 235 22 189 367 0 51 chr6 30809548 30809627 -151605615 - MIR SINE MIR -165 97 23 1874 152 83 3 chr6 30809658 30810006 -151605236 + Tigger1 DNA MER2_type 2043 2418 0 1666 276 104 8 chr6 30811192 30811814 -151603428 + L2 LINE L2 18 699 -2615 1706 245 87 19 chr6 30811816 30812392 -151602850 + MLT1E2 LTR MaLR 1 615 -11 2032 232 47 123 chr6 30812423 30813439 -151601803 + L2 LINE L2 719 1657 -1657 473 292 65 19 chr6 30813616 30813876 -151601366 + LTR16B LTR ERVL 193 464 0 520 339 41 22 chr6 30814557 30814876 -151600366 + ERVL LTR ERVL 853 1177 -3819 250 348 44 13 chr6 30814901 30815128 -151600114 + ERVL LTR ERVL 1302 1535 -4119 2757 317 36 42 chr6 30815238 30816412 -151598830 + ERVL LTR ERVL 1666 2832 -2164 2224 116 3 0 chr6 30816412 30816705 -151598537 + AluSp SINE Alu 1 294 -19 2757 317 36 42 chr6 30816705 30816969 -151598273 + ERVL LTR ERVL 2832 3096 -1900 513 322 92 3 chr6 30817004 30817296 -151597946 + ERVL LTR ERVL 3187 3504 -2260 1046 345 47 35 chr6 30817359 30818523 -151596719 + ERVL LTR ERVL 3739 5260 -504 562 319 55 16 chr6 30818531 30818914 -151596328 + LTR16B LTR ERVL 62 459 -5 375 130 32 2 chr6 30819033 30819105 -151596137 + MLT1F LTR MaLR 476 539 -3 281 301 0 29 chr6 30819215 30819258 -151595984 + CT-rich Low_complexity Low_complexity 1 44 -56 2323 109 0 3 chr6 30819258 30819560 -151595682 - AluY SINE Alu -10 301 1 281 301 0 29 chr6 30819560 30819619 -151595623 + CT-rich Low_complexity Low_complexity 44 100 0 263 204 46 9 chr6 30819632 30819740 -151595502 + CT-rich Low_complexity Low_complexity 3 114 0 558 328 134 26 chr6 30819968 30820355 -151594887 + L1ME3A LINE L1 5523 5951 -219 369 0 0 0 chr6 30820375 30820416 -151594826 + (TA)n Simple_repeat Simple_repeat 2 42 0 3619 131 0 4 chr6 30820482 30820994 -151594248 - MER9 LTR ERVK 0 511 2 6434 88 14 8 chr6 30821839 30822837 -151592405 + L1PA10 LINE L1 5164 6163 -5 2032 215 43 27 chr6 30822943 30823042 -151592200 + MLT1F1 LTR MaLR 6 102 -465 2371 133 5 24 chr6 30823042 30823424 -151591818 + THE1C LTR MaLR 1 375 0 2032 215 43 27 chr6 30823424 30823877 -151591365 + MLT1F1 LTR MaLR 102 567 0 1440 221 25 0 chr6 30823944 30824229 -151591013 - AluJb SINE Alu -19 293 2 1643 224 88 47 chr6 30824393 30824679 -151590563 + MLT1E3 LTR MaLR 3 276 -348 2237 96 0 46 chr6 30824679 30825002 -151590240 + AluYa5 SINE Alu 1 308 -3 1643 224 88 47 chr6 30825002 30825263 -151589979 + MLT1E3 LTR MaLR 276 572 -52 182 265 0 0 chr6 30825399 30825448 -151589794 - L2 LINE L2 0 3313 3265 207 260 40 0 chr6 30825496 30825546 -151589696 - L2 LINE L2 -553 2761 2710 195 100 0 0 chr6 30826376 30826406 -151588836 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 30827044 30827066 -151588176 + GC_rich Low_complexity Low_complexity 1 22 0 187 330 70 17 chr6 30831020 30831135 -151584107 - L2 LINE L2 -2 3311 3191 353 193 0 0 chr6 30831140 30831197 -151584045 - MER30 DNA MER1_type -2 228 172 1591 336 48 34 chr6 30831587 30832635 -151582607 + HERV16 LTR ERVL 2035 3096 -1900 518 176 20 0 chr6 30832721 30832823 -151582419 + AluSp/q SINE Alu 201 304 -9 210 37 0 0 chr6 30833103 30833130 -151582112 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2062 116 4 0 chr6 30833131 30833407 -151581835 - AluSq SINE Alu -36 277 1 2180 139 0 0 chr6 30833554 30833863 -151581379 + AluSg SINE Alu 1 309 -1 204 40 0 0 chr6 30834522 30834547 -151580695 + (T)n Simple_repeat Simple_repeat 1 25 0 7274 82 54 4 chr6 30834547 30835523 -151579719 - SVA Other Other -216 1170 146 942 148 0 0 chr6 30837193 30837348 -151577894 + MSTA LTR MaLR 1 155 -273 923 218 0 0 chr6 30837349 30837542 -151577700 + MSTB1-int LTR MaLR 287 479 -1172 1932 239 27 34 chr6 30837552 30838113 -151577129 + MSTB1-int LTR MaLR 1078 1634 -17 1746 210 66 10 chr6 30838129 30838538 -151576704 + MSTB1 LTR MaLR 1 432 0 504 261 78 14 chr6 30838557 30838699 -151576543 - MER21B LTR ERV1 -694 169 19 1792 241 21 24 chr6 30838798 30839309 -151575933 - MER21B-int LTR ERV1 -50 4141 3632 1579 272 30 45 chr6 30839448 30840022 -151575220 - MER21B-int LTR ERV1 -747 3444 2880 4191 239 121 43 chr6 30840028 30841344 -151573898 + L1M4 LINE L1 3242 4759 -1387 2318 74 51 0 chr6 30841344 30841640 -151573602 + AluY SINE Alu 1 311 0 4191 239 121 43 chr6 30841640 30842261 -151572981 + L1M4 LINE L1 4759 5330 -816 601 240 5 48 chr6 30842262 30842470 -151572772 + L1MC/D LINE L1 4835 5033 -1113 609 182 0 0 chr6 30842476 30842575 -151572667 + FLAM_A SINE Alu 1 99 -43 1802 196 54 59 chr6 30842604 30843348 -151571894 + L1MC/D LINE L1 5016 5763 -596 777 219 233 3 chr6 30843356 30843699 -151571543 - Charlie1 DNA MER1_type -994 1767 40 651 248 22 12 chr6 30843928 30844136 -151571106 + L1PB4 LINE L1 5964 6302 0 186 103 0 0 chr6 30844180 30844209 -151571033 + (TG)n Simple_repeat Simple_repeat 2 30 0 1850 158 80 3 chr6 30848289 30848638 -151566604 + Tigger1 DNA MER2_type 2043 2418 0 2659 270 154 29 chr6 30849856 30850467 -151564775 + L2 LINE L2 18 551 -2763 1992 227 94 26 chr6 30850467 30851053 -151564189 + MLT1E2 LTR MaLR 1 626 0 2659 270 154 29 chr6 30851053 30851897 -151563345 + L2 LINE L2 551 1656 -1658 676 339 61 14 chr6 30851897 30852340 -151562902 + LTR16B LTR ERVL 1 464 0 2920 334 39 31 chr6 30853040 30855480 -151559762 + MERVL LTR ERVL 871 3504 -1900 494 312 93 44 chr6 30855498 30855883 -151559359 + MERVL LTR ERVL 3693 4393 -900 341 345 48 36 chr6 30856493 30856969 -151558273 + MERVL LTR ERVL 4779 5260 -504 850 309 40 16 chr6 30856987 30857365 -151557877 + LTR16B LTR ERVL 73 459 -5 400 208 0 0 chr6 30857487 30857564 -151557678 + MLT1F1 LTR MaLR 491 567 0 343 191 39 39 chr6 30857704 30857882 -151557360 + CT-rich Low_complexity Low_complexity 3 180 0 434 265 144 44 chr6 30858108 30858406 -151556836 + L1ME3A LINE L1 5545 5872 -298 219 69 0 0 chr6 30858487 30858516 -151556726 + (TA)n Simple_repeat Simple_repeat 1 29 0 469 77 0 0 chr6 30859413 30859478 -151555764 - MER41A LTR ERV1 -88 466 402 6476 94 8 4 chr6 30859832 30861377 -151553865 + L1PA10 LINE L1 4619 6163 -5 1993 234 45 27 chr6 30861462 30861561 -151553681 + MLT1F1 LTR MaLR 6 102 -465 2179 121 55 25 chr6 30861561 30861925 -151553317 + THE1C LTR MaLR 1 375 0 1993 234 45 27 chr6 30861925 30862377 -151552865 + MLT1F1 LTR MaLR 102 567 0 1476 205 0 3 chr6 30862450 30862738 -151552504 - AluJb SINE Alu -25 287 1 2027 211 82 58 chr6 30862900 30863433 -151551809 + MLT1E3 LTR MaLR 3 554 -70 1235 214 37 34 chr6 30863433 30863728 -151551514 + AluJo SINE Alu 1 296 -16 2027 211 82 58 chr6 30863728 30863801 -151551441 + MLT1E3 LTR MaLR 554 624 0 203 178 89 0 chr6 30863925 30863970 -151551272 - L2 LINE L2 0 3313 3265 209 284 161 0 chr6 30864018 30864099 -151551143 - L2 LINE L2 -553 2761 2668 222 151 0 38 chr6 30866275 30866328 -151548914 + G-rich Low_complexity Low_complexity 3 53 0 3862 175 65 47 chr6 30869120 30870057 -151545185 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 30870523 30870548 -151544694 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 260 310 85 39 chr6 30870555 30870684 -151544558 + L3 LINE CR1 888 1022 -555 205 316 79 18 chr6 30870697 30870811 -151544431 - L2 LINE L2 -2 3311 3191 435 117 0 1 chr6 30870814 30870898 -151544344 - MER30 DNA MER1_type 0 230 140 234 0 0 0 chr6 30871153 30871179 -151544063 + (TCTCCC)n Simple_repeat Simple_repeat 2 27 0 9328 30 0 198 chr6 30871179 30872903 -151542339 + SVA Other Other 1 1383 -3 391 280 89 19 chr6 30873066 30873223 -151542019 + ERVL LTR ERVL 1989 2156 -3608 328 143 0 0 chr6 30873727 30873776 -151541466 + MLT1F LTR MaLR 491 539 -3 2380 84 3 0 chr6 30873882 30874255 -151540987 - AluY SINE Alu 0 374 1 297 308 0 33 chr6 30873885 30874314 -151540928 + CT-rich Low_complexity Low_complexity 1 116 0 231 252 19 9 chr6 30874327 30874434 -151540808 + CT-rich Low_complexity Low_complexity 3 110 0 408 303 129 16 chr6 30874673 30874983 -151540259 + L1ME3A LINE L1 5528 5872 -298 230 250 0 0 chr6 30875073 30875137 -151540105 + L1MC4 LINE L1 6640 6703 -1339 201 147 0 0 chr6 30875139 30875173 -151540069 + (TA)n Simple_repeat Simple_repeat 2 35 0 352 296 23 0 chr6 30875177 30875265 -151539977 + L1MC4 LINE L1 6614 6703 -1339 * 361 292 22 0 chr6 30875215 30875304 -151539938 - L1MC4 LINE L1 -1339 6703 6613 3501 118 24 4 chr6 30875364 30875865 -151539377 - MER9 LTR ERVK 0 511 1 6426 82 16 10 chr6 30876694 30877693 -151537549 + L1PA10 LINE L1 5164 6163 -5 2128 222 44 28 chr6 30877781 30877880 -151537362 + MLT1F1 LTR MaLR 6 102 -465 2227 149 5 24 chr6 30877880 30878262 -151536980 + THE1C LTR MaLR 1 375 0 2128 222 44 28 chr6 30878262 30878707 -151536535 + MLT1F1 LTR MaLR 102 559 -8 1289 225 25 0 chr6 30878784 30879064 -151536178 - AluJo SINE Alu -25 287 1 1852 226 96 46 chr6 30879227 30879513 -151535729 + MLT1E3 LTR MaLR 3 273 -351 2079 83 20 10 chr6 30879513 30879814 -151535428 + AluY SINE Alu 1 304 -7 1852 226 96 46 chr6 30879814 30880071 -151535171 + MLT1E3 LTR MaLR 273 573 -51 203 270 140 20 chr6 30880303 30880403 -151534839 - L2 LINE L2 -553 2761 2650 192 290 43 29 chr6 30885743 30885812 -151529430 + L3 LINE CR1 958 1027 -550 199 313 70 17 chr6 30885824 30885939 -151529303 - L2 LINE L2 -2 3311 3191 421 117 0 1 chr6 30885942 30886026 -151529216 - MER30 DNA MER1_type 0 230 140 2157 323 77 44 chr6 30886277 30887936 -151527306 + HERVL LTR ERVL 1749 3521 -1900 733 320 58 69 chr6 30887936 30888741 -151526501 + HERVL LTR ERVL 3691 4843 -534 200 128 0 26 chr6 30888742 30888781 -151526461 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 192 97 0 0 chr6 30888782 30888813 -151526429 + (TATG)n Simple_repeat Simple_repeat 2 32 0 295 271 66 44 chr6 30889023 30889204 -151526038 + HERVL LTR ERVL 5076 5260 -504 705 324 36 13 chr6 30889212 30889601 -151525641 + LTR16B LTR ERVL 63 460 -4 367 218 0 0 chr6 30889717 30889795 -151525447 + MLT1F1 LTR MaLR 488 565 -2 191 250 21 0 chr6 30889865 30889913 -151525329 + L2 LINE L2 1789 1837 -1477 337 285 143 29 chr6 30890223 30890508 -151524734 + L1ME LINE L1 5552 5869 -301 1909 127 3 0 chr6 30890764 30891075 -151524167 - AluSq SINE Alu 0 312 1 668 189 0 30 chr6 30892178 30892310 -151522932 + AluJb SINE Alu 159 286 -26 231 103 0 0 chr6 30892310 30892349 -151522893 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 1868 226 39 62 chr6 30892459 30892619 -151522623 + MLT1F1 LTR MaLR 15 177 -390 1987 118 4 0 chr6 30892619 30892934 -151522308 + AluSg SINE Alu 3 318 0 1868 226 39 62 chr6 30892934 30893338 -151521904 + MLT1F1 LTR MaLR 177 567 0 2263 226 71 22 chr6 30893549 30894130 -151521112 + MLT1E3 LTR MaLR 14 622 -2 459 268 24 8 chr6 30894286 30894409 -151520833 - L2 LINE L2 -1 3312 3188 356 303 67 0 chr6 30894417 30894536 -151520706 - L2 LINE L2 -549 2765 2639 1352 173 3 32 chr6 30894909 30895192 -151520050 + AluJo SINE Alu 12 286 -26 2250 171 41 7 chr6 30898081 30898495 -151516747 + MSTA LTR MaLR 1 428 0 2635 184 13 0 chr6 30898495 30898968 -151516274 + MSTA-int LTR MaLR 1 479 -1172 2232 246 35 19 chr6 30898977 30899542 -151515700 + MSTA-int LTR MaLR 1078 1651 0 1915 196 65 8 chr6 30899552 30899951 -151515291 + MSTB1 LTR MaLR 11 432 0 548 248 109 7 chr6 30899970 30900107 -151515135 - MER21B LTR ERV1 -694 169 19 4403 253 45 30 chr6 30900205 30901461 -151513781 - MER21B-int LTR ERV1 -50 4141 2868 536 264 14 10 chr6 30901466 30901674 -151513568 + L1M4 LINE L1 3250 3458 -2688 509 304 26 48 chr6 30901674 30901904 -151513338 + Harlequin LTR ERV1 785 1009 -6776 6845 50 10 48 chr6 30902125 30903444 -151511798 + L1PA7 LINE L1 4861 6144 -10 864 335 24 26 chr6 30903458 30904079 -151511163 + Harlequin LTR ERV1 1073 1692 -4957 186 43 0 0 chr6 30904094 30904117 -151511125 + (GA)n Simple_repeat Simple_repeat 1 23 0 307 179 18 0 chr6 30904117 30904173 -151511069 + LTR18B LTR ERVL 346 402 -212 391 165 35 24 chr6 30904219 30904304 -151510938 + LTR18B LTR ERVL 268 353 -261 456 256 274 5 chr6 30904841 30905064 -151510178 - MER102b DNA MER1_type -3 338 56 673 311 71 63 chr6 30905717 30906307 -151508935 + Harlequin LTR ERV1 1371 1955 -5830 2288 81 0 3 chr6 30906307 30906604 -151508638 + AluY SINE Alu 1 296 -15 673 311 71 63 chr6 30906604 30906712 -151508530 + Harlequin LTR ERV1 1955 4914 -2871 327 333 0 8 chr6 30906744 30906876 -151508366 + Harlequin LTR ERV1 5554 5684 -2101 494 291 49 68 chr6 30907341 30907954 -151507288 + Harlequin LTR ERV1 3368 5490 -1159 328 333 0 0 chr6 30908030 30908120 -151507122 - L1MC4 LINE L1 -1339 6703 6614 300 53 0 0 chr6 30908177 30908215 -151507027 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1369 317 14 23 chr6 30908216 30908777 -151506465 + Harlequin LTR ERV1 7092 7647 -138 2063 200 32 13 chr6 30912151 30912718 -151502524 + L1MB3 LINE L1 4899 5483 -700 240 35 0 0 chr6 30912718 30912747 -151502495 + (CA)n Simple_repeat Simple_repeat 2 30 0 2063 200 32 13 chr6 30912747 30912997 -151502245 + L1MB3 LINE L1 5483 5727 -456 949 125 230 5 chr6 30912987 30913187 -151502055 + L1MB3 LINE L1 5938 6182 -1 * 441 194 0 0 chr6 30914921 30914993 -151500249 - FRAM/FAM SINE Alu -105 71 1 213 255 20 71 chr6 30915302 30915400 -151499842 - MIR3 SINE MIR -110 98 6 207 273 0 65 chr6 30916598 30916675 -151498567 + GA-rich Low_complexity Low_complexity 1 72 0 310 278 7 76 chr6 30916968 30917112 -151498130 - L1ME1 LINE L1 -6 6160 6027 987 139 52 17 chr6 30917403 30917575 -151497667 + FRAM SINE Alu 1 175 -1 7622 34 0 1 chr6 30918054 30919748 -151495494 + L1PA3 LINE L1 4504 6155 0 534 216 0 0 chr6 30920565 30920741 -151494501 + (TG)n Simple_repeat Simple_repeat 1 176 0 2398 91 0 0 chr6 30921643 30921950 -151493292 - AluSg SINE Alu -3 307 1 806 305 118 37 chr6 30922053 30922773 -151492469 + L2 LINE L2 2513 3307 -6 602 296 152 30 chr6 30922773 30922828 -151492414 + L1ME4a LINE L1 5539 5586 -535 1893 122 0 0 chr6 30922828 30923082 -151492160 + AluSx SINE Alu 47 300 -12 602 296 152 30 chr6 30923082 30923361 -151491881 + L1ME4a LINE L1 5586 5914 -207 1239 202 40 44 chr6 30923677 30923974 -151491268 - AluJo SINE Alu -16 296 1 1580 178 14 10 chr6 30924693 30924985 -151490257 - AluJb SINE Alu -19 293 1 407 277 30 136 chr6 30925266 30925413 -151489829 - L2 LINE L2 0 3272 3180 414 39 0 0 chr6 30925413 30925465 -151489777 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 407 277 30 136 chr6 30925465 30925656 -151489586 - L2 LINE L2 -92 3180 2970 254 256 26 68 chr6 30925825 30925942 -151489300 + MER5A DNA MER1_type 55 166 -23 * 717 142 9 0 chr6 30925868 30925974 -151489268 - MER5A DNA MER1_type -80 109 3 259 330 23 39 chr6 30926942 30927200 -151488042 - L1MC4a LINE L1 -1785 6023 5770 341 299 99 24 chr6 30927324 30927618 -151487624 + L1ME3 LINE L1 5625 5940 -222 1617 192 7 7 chr6 30927619 30927911 -151487331 + AluJb SINE Alu 1 292 -20 1824 261 97 10 chr6 30928593 30929293 -151485949 + L1ME2 LINE L1 5402 6162 -2 963 207 18 0 chr6 30929339 30929556 -151485686 + L1MA4A LINE L1 3742 3962 -2184 5419 151 25 27 chr6 30929568 30931013 -151484229 + L1MA4A LINE L1 4861 6298 -5 284 73 0 109 chr6 30931438 30931493 -151483749 + MLT1B LTR MaLR 1 49 -341 * 941 161 33 0 chr6 30931490 30931670 -151483572 + MLT1B LTR MaLR 205 390 0 287 305 49 44 chr6 30932091 30932271 -151482971 - MIR SINE MIR -63 199 21 180 195 98 0 chr6 30934809 30934850 -151480392 - MIR SINE MIR -98 164 120 184 367 0 51 chr6 30934918 30934997 -151480245 - MIR SINE MIR -165 97 23 574 163 98 0 chr6 30935027 30935150 -151480092 + Tigger1 DNA MER2_type 2042 2176 -242 2818 230 72 104 chr6 30935150 30935518 -151479724 + L2 LINE L2 295 673 -2641 1943 218 101 27 chr6 30935518 30936101 -151479141 + MLT1E2 LTR MaLR 1 626 0 2818 230 72 104 chr6 30936101 30937139 -151478103 + L2 LINE L2 673 1656 -1658 884 306 72 27 chr6 30937139 30937583 -151477659 + LTR16B LTR ERVL 1 464 0 2746 317 50 42 chr6 30938273 30939859 -151475383 + ERVL LTR ERVL 858 2430 -2855 2030 129 7 0 chr6 30939859 30940138 -151475104 + AluSq SINE Alu 1 281 -32 258 32 0 0 chr6 30940142 30940173 -151475069 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 2746 317 50 42 chr6 30940173 30940969 -151474273 + ERVL LTR ERVL 2432 3385 -1900 786 370 38 14 chr6 30941161 30941953 -151473289 + ERVL LTR ERVL 4103 4914 -571 456 323 18 0 chr6 30942267 30942431 -151472811 + LTR16B LTR ERVL 62 228 -236 886 208 15 15 chr6 30942441 30942638 -151472604 + MLT1F1 LTR MaLR 371 567 0 1680 175 7 10 chr6 30942702 30942999 -151472243 - AluJb SINE Alu -16 296 1 1745 222 77 71 chr6 30943172 30943695 -151471547 + MLT1E3 LTR MaLR 14 543 -81 1357 223 9 28 chr6 30943695 30944013 -151471229 + AluJo SINE Alu 1 312 0 1745 222 77 71 chr6 30944013 30944096 -151471146 + MLT1E3 LTR MaLR 543 624 0 217 204 0 0 chr6 30944231 30944280 -151470962 - L2 LINE L2 0 3313 3265 283 268 56 0 chr6 30944329 30944400 -151470842 - L2 LINE L2 -554 2760 2686 180 152 0 0 chr6 30945201 30945234 -151470008 + A-rich Low_complexity Low_complexity 1 33 0 1141 298 97 25 chr6 30949891 30950009 -151465233 - L2 LINE L2 -2 3311 3203 942 170 55 77 chr6 30950009 30950244 -151464998 - MER30 DNA MER1_type 0 230 1 1141 298 97 25 chr6 30950244 30951024 -151464218 - L2 LINE L2 -110 3203 2352 410 247 42 47 chr6 30951307 30951589 -151463653 + L1MEc LINE L1 2145 2386 -3829 891 203 38 0 chr6 30951672 30951830 -151463412 - FRAM SINE Alu -14 162 1 506 182 170 42 chr6 30952339 30952504 -151462738 + MER20 DNA MER1_type 32 217 -2 311 285 169 15 chr6 30952505 30952635 -151462607 - MIR SINE MIR -91 171 22 21 0 0 0 chr6 30953957 30953978 -151461264 + AT_rich Low_complexity Low_complexity 1 21 0 1457 231 46 27 chr6 30954152 30954629 -151460613 + L1MB4 LINE L1 4904 5389 -757 2279 114 0 7 chr6 30954640 30954939 -151460303 + AluSc SINE Alu 1 297 -12 3476 164 44 9 chr6 30954983 30955648 -151459594 + L1MB4 LINE L1 5493 6180 0 1074 169 4 24 chr6 30955792 30956029 -151459213 - MER4A LTR ERV1 -113 551 261 601 105 0 21 chr6 30956033 30956128 -151459114 - MER4A LTR ERV1 -571 93 1 376 243 40 0 chr6 30956147 30956295 -151458947 + L1MC5 LINE L1 7299 7452 -509 429 359 46 27 chr6 30956394 30957076 -151458166 + HERVL18 LTR ERVL 2726 3478 -1925 431 348 27 27 chr6 30957243 30957787 -151457455 + HERVL18 LTR ERVL 3619 4228 -1181 276 229 14 0 chr6 30958547 30958617 -151456625 + MER4B-int LTR ERV1 6000 6070 -688 1751 182 61 26 chr6 30958623 30959051 -151456191 + LTR47B LTR ERVL 1 443 0 516 266 65 62 chr6 30960295 30960396 -151454846 + L1MC5 LINE L1 7352 7451 -510 2871 179 16 11 chr6 30960396 30960948 -151454294 + MER41D LTR ERV1 3 557 0 516 266 65 62 chr6 30960948 30961264 -151453978 + L1MC5 LINE L1 7451 7770 -191 1839 194 16 32 chr6 30961280 30961835 -151453407 + L1MC3 LINE L1 7000 7692 -93 347 242 83 17 chr6 30961900 30962020 -151453222 + L1MC5 LINE L1 7790 7917 -44 1624 155 97 7 chr6 30962031 30962309 -151452933 + AluJo SINE Alu 1 303 -9 2689 170 42 5 chr6 30962380 30962957 -151452285 - L1MB3 LINE L1 0 6183 5586 862 109 32 19 chr6 30964702 30964858 -151450384 - L1MA5 LINE L1 0 6300 6143 6908 186 4 6 chr6 30964858 30966623 -151448619 + L1PB1 LINE L1 3770 5530 -621 1369 50 0 2 chr6 30966623 30966882 -151448360 - AluY SINE Alu -2 309 1 3350 96 54 15 chr6 30966882 30967415 -151447827 + L1PB1 LINE L1 5514 6067 -84 7064 159 28 120 chr6 30967440 30967892 -151447350 - L1MB3 LINE L1 -841 5305 4813 2254 82 41 0 chr6 30967892 30968185 -151447057 + AluSg SINE Alu 1 305 -5 7064 159 28 120 chr6 30968185 30969826 -151445416 - L1MB3 LINE L1 -1333 4813 3405 2214 180 87 74 chr6 30969827 30969927 -151445315 - MER65-int LTR ERV1 -757 1029 932 2932 6 0 0 chr6 30969927 30970245 -151444997 + AluYb8 SINE Alu 1 318 0 2214 180 87 74 chr6 30970245 30970679 -151444563 - MER65-int LTR ERV1 -854 932 1097 2409 77 0 0 chr6 30970679 30970976 -151444266 + AluY SINE Alu 1 297 -14 2214 180 87 74 chr6 30970976 30971262 -151443980 - MER65-int LTR ERV1 -688 1098 817 2270 71 3 14 chr6 30971699 30971995 -151443247 + AluY SINE Alu 1 293 -18 21 36 0 0 chr6 30972845 30972873 -151442369 + AT_rich Low_complexity Low_complexity 1 28 0 315 274 53 26 chr6 30973422 30973535 -151441707 + L2 LINE L2 1697 1812 -1502 1435 270 143 56 chr6 30973536 30974063 -151441179 - HAL1 LINE L1 -9 2498 2018 975 205 124 69 chr6 30974063 30974409 -151440833 + MLT1A1 LTR MaLR 1 365 0 1435 270 143 56 chr6 30974409 30975286 -151439956 - HAL1 LINE L1 -489 2018 972 240 356 46 26 chr6 30975347 30975541 -151439701 + L2 LINE L2 3116 3313 0 238 326 35 28 chr6 30975765 30975906 -151439336 + MIR SINE MIR 101 242 -20 437 344 28 41 chr6 30975920 30976141 -151439101 - L1ME LINE L1 -354 5767 5549 1999 64 4 16 chr6 30976141 30976421 -151438821 - AluY SINE Alu 0 312 36 437 344 28 41 chr6 30976421 30976515 -151438727 - L1ME LINE L1 -572 5549 5455 1860 261 83 4 chr6 30976672 30977235 -151438007 + MER90 LTR ERV1 5 612 -2 1772 171 24 0 chr6 30977564 30977851 -151437391 + AluSx SINE Alu 1 294 -18 1042 168 35 15 chr6 30978286 30978488 -151436754 - MER3 DNA MER1_type -2 207 2 1593 194 57 17 chr6 30978490 30978841 -151436401 + MLT1A1 LTR MaLR 1 365 0 1478 181 0 106 chr6 30978904 30979235 -151436007 + AluJo SINE Alu 1 296 -16 3524 221 100 41 chr6 30979557 30979908 -151435334 + Charlie1a DNA MER1_type 7 336 -2425 2026 141 3 13 chr6 30979908 30980213 -151435029 + AluSx SINE Alu 1 302 -10 3524 221 100 41 chr6 30980213 30980805 -151434437 + Charlie1a DNA MER1_type 336 892 -1869 1411 197 48 7 chr6 30980805 30981100 -151434142 + AluJo SINE Alu 1 307 -5 3524 221 100 41 chr6 30981100 30981523 -151433719 + Charlie1a DNA MER1_type 892 1455 0 276 233 181 35 chr6 30982294 30982410 -151432832 + L3 LINE CR1 956 1088 -489 * 2333 277 111 29 chr6 30982377 30983510 -151431732 - L2 LINE L2 -2 3311 2108 302 278 308 0 chr6 30983583 30983716 -151431526 - MER5A DNA MER1_type -7 182 9 319 299 132 7 chr6 30983745 30983889 -151431353 - MER5B DNA MER1_type -16 162 1 209 33 33 0 chr6 30983976 30984006 -151431236 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 403 326 47 63 chr6 30984028 30984390 -151430852 - LTR67 LTR ERVL -98 459 104 2670 147 125 10 chr6 30984912 30985409 -151429833 - MER21A LTR ERV1 0 931 378 1174 135 90 12 chr6 30985416 30985661 -151429581 - MER21A LTR ERV1 -667 264 1 1924 176 3 29 chr6 30985670 30986045 -151429197 - MLT1A1 LTR MaLR 0 365 1 5313 201 47 61 chr6 30986122 30986494 -151428748 + L1MB7 LINE L1 3576 3951 -2233 567 238 0 24 chr6 30986494 30986620 -151428622 + FLAM_A SINE Alu 4 126 -7 5313 201 47 61 chr6 30986620 30986703 -151428539 + L1MB7 LINE L1 3951 4034 -2150 1944 138 126 31 chr6 30986703 30987093 -151428149 - MSTA LTR MaLR -1 427 1 5313 201 47 61 chr6 30987093 30987720 -151427522 + L1MB7 LINE L1 4034 4668 -1516 1907 160 6 13 chr6 30987720 30988032 -151427210 + AluJo SINE Alu 1 310 -2 5313 201 47 61 chr6 30988032 30988278 -151426964 + L1MB7 LINE L1 4668 4916 -1268 1627 218 21 46 chr6 30988278 30988755 -151426487 + MLT1C LTR MaLR 3 467 0 5313 201 47 61 chr6 30988755 30988872 -151426370 + L1MB7 LINE L1 4916 5033 -1151 2323 85 0 0 chr6 30988872 30989154 -151426088 + AluSg SINE Alu 1 282 -28 291 28 0 0 chr6 30989154 30989190 -151426052 + (TA)n Simple_repeat Simple_repeat 2 37 0 5313 201 47 61 chr6 30989190 30989324 -151425918 + L1MB7 LINE L1 5032 5166 -1018 336 125 111 0 chr6 30989324 30989396 -151425846 + L1MA7 LINE L1 6211 6290 -1 5313 201 47 61 chr6 30989396 30989586 -151425656 + L1MB7 LINE L1 5166 5357 -827 2164 134 0 0 chr6 30989586 30989884 -151425358 + AluSx SINE Alu 3 300 -12 5313 201 47 61 chr6 30989884 30990002 -151425240 + L1MB7 LINE L1 5357 5475 -709 2176 102 0 3 chr6 30990002 30990285 -151424957 + AluSg SINE Alu 1 282 -28 291 114 0 0 chr6 30990285 30990329 -151424913 + (CA)n Simple_repeat Simple_repeat 2 45 0 5313 201 47 61 chr6 30990329 30990994 -151424248 + L1MB7 LINE L1 5473 6123 -61 5404 135 53 26 chr6 30991057 30991339 -151423903 - L1MA4A LINE L1 -6 6297 6024 303 49 0 0 chr6 30991339 30991380 -151423862 + (CA)n Simple_repeat Simple_repeat 1 41 0 5404 135 53 26 chr6 30991380 30992591 -151422651 - L1MA4A LINE L1 -279 6024 4750 1243 145 26 5 chr6 30992653 30992846 -151422396 - AluJb SINE Alu -16 296 100 1939 181 15 2 chr6 30992847 30993251 -151421991 + L1 LINE L1 3439 3847 -2299 235 196 0 0 chr6 30993811 30993857 -151421385 - L2 LINE L2 -5 3308 3263 616 171 138 126 chr6 30994044 30994378 -151420864 + L1ME3A LINE L1 5727 6064 -106 718 199 64 6 chr6 30995235 30995406 -151419836 - MER3 DNA MER1_type 0 209 29 338 378 67 31 chr6 30995833 30996026 -151419216 + L2 LINE L2 3048 3247 -25 255 180 16 16 chr6 30996324 30996385 -151418857 - MIR SINE MIR -111 151 91 521 266 91 35 chr6 30998487 30998686 -151416556 + MIR SINE MIR 5 214 -48 1846 139 6 59 chr6 31002126 31002449 -151412793 - AluJb SINE Alu -6 306 1 1638 261 46 38 chr6 31002604 31003497 -151411745 - L1MEd LINE L1 -4862 1257 440 30 0 0 0 chr6 31003870 31003900 -151411342 + AT_rich Low_complexity Low_complexity 1 30 0 389 216 72 22 chr6 31003907 31004046 -151411196 - L1M4 LINE L1 -922 5224 5079 2075 120 113 49 chr6 31004840 31005248 -151409994 + Tigger2a DNA MER2_type 1 434 0 222 282 153 0 chr6 31006155 31006240 -151409002 + L2 LINE L2 3132 3229 -43 1718 211 75 64 chr6 31010257 31010715 -151404527 + MLT1E3 LTR MaLR 87 553 -71 1418 224 14 10 chr6 31010715 31011010 -151404232 + AluJo SINE Alu 1 296 -16 1718 211 75 64 chr6 31011010 31011083 -151404159 + MLT1E3 LTR MaLR 553 624 0 226 204 0 0 chr6 31011206 31011255 -151403987 - L2 LINE L2 0 3313 3265 214 284 161 0 chr6 31011303 31011384 -151403858 - L2 LINE L2 -553 2761 2668 233 151 0 38 chr6 31013518 31013571 -151401671 + G-rich Low_complexity Low_complexity 3 53 0 3855 183 64 45 chr6 31016368 31017304 -151397938 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 31017770 31017795 -151397447 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 251 292 21 42 chr6 31017839 31017935 -151397307 + L3 LINE CR1 934 1027 -550 195 316 88 26 chr6 31017944 31018058 -151397184 - L2 LINE L2 -2 3311 3191 397 128 0 1 chr6 31018061 31018145 -151397097 - MER30 DNA MER1_type 0 230 140 339 287 89 19 chr6 31018555 31018712 -151396530 + ERVL LTR ERVL 1989 2156 -3608 313 143 0 0 chr6 31019177 31019226 -151396016 + MLT1F LTR MaLR 491 539 -3 2507 87 3 0 chr6 31019336 31019707 -151395535 - AluY SINE Alu 0 372 1 231 252 19 9 chr6 31019779 31019886 -151395356 + CT-rich Low_complexity Low_complexity 3 110 0 357 319 119 7 chr6 31020125 31020435 -151394807 + L1ME3A LINE L1 5528 5872 -298 287 104 21 0 chr6 31020519 31020567 -151394675 + (TA)n Simple_repeat Simple_repeat 1 49 0 3524 118 24 4 chr6 31020633 31021133 -151394109 - MER9 LTR ERVK 0 511 2 6379 84 16 10 chr6 31021963 31022962 -151392280 + L1PA10 LINE L1 5164 6163 -5 1975 222 44 28 chr6 31023050 31023149 -151392093 + MLT1F1 LTR MaLR 6 102 -465 2242 152 5 24 chr6 31023149 31023531 -151391711 + THE1C LTR MaLR 1 375 0 1975 222 44 28 chr6 31023531 31023976 -151391266 + MLT1F1 LTR MaLR 102 559 -8 1471 220 25 0 chr6 31024047 31024333 -151390909 - AluJo SINE Alu -19 293 1 1694 224 96 46 chr6 31024496 31024782 -151390460 + MLT1E3 LTR MaLR 3 273 -351 2253 91 16 10 chr6 31024782 31025090 -151390152 + AluY SINE Alu 1 310 -1 1694 224 96 46 chr6 31025090 31025347 -151389895 + MLT1E3 LTR MaLR 273 573 -51 208 254 30 0 chr6 31025742 31025809 -151389433 + GA-rich Low_complexity Low_complexity 1 69 0 503 293 136 38 chr6 31126741 31127086 -151288156 + L3 LINE CR1 946 1324 -253 180 175 100 0 chr6 31127162 31127202 -151288040 + L2 LINE L2 3220 3263 -9 2378 103 0 0 chr6 31127639 31127940 -151287302 - AluSq SINE Alu -12 301 1 26 30 0 0 chr6 31127944 31127977 -151287265 + AT_rich Low_complexity Low_complexity 1 33 0 720 176 84 27 chr6 31128106 31128360 -151286882 + HsTC2 DNA Tc2 3 308 -1590 554 283 29 0 chr6 31128399 31128572 -151286670 + HsTC2 DNA Tc2 1718 1895 -3 1884 137 0 29 chr6 31128829 31129135 -151286107 - AluJb SINE Alu -14 298 2 23 0 0 0 chr6 31129566 31129589 -151285653 + AT_rich Low_complexity Low_complexity 1 23 0 2335 81 3 3 chr6 31129677 31129975 -151285267 - AluSq SINE Alu -15 298 1 852 128 0 71 chr6 31130698 31130839 -151284403 - FLAM_C SINE Alu -10 133 3 723 171 137 55 chr6 31132202 31132348 -151282894 - FRAM SINE Alu -8 158 1 1112 170 0 1 chr6 31132371 31132594 -151282648 - AluJo SINE Alu -30 282 28 891 152 0 0 chr6 31132608 31132733 -151282509 - AluJo SINE Alu -177 125 1 2351 106 3 0 chr6 31134331 31134643 -151280599 + AluSq SINE Alu 1 313 0 3133 126 26 67 chr6 31135953 31136523 -151278719 - LTR10A LTR ERV1 -62 547 1 563 201 76 7 chr6 31136915 31137059 -151278183 - MER5B DNA MER1_type -24 154 1 2067 104 3 20 chr6 31137380 31137678 -151277564 + AluSx SINE Alu 1 293 -19 462 272 78 52 chr6 31138350 31138680 -151276562 + L1MC4a LINE L1 5531 5819 -302 2100 69 4 11 chr6 31139284 31139546 -151275696 + AluSg SINE Alu 1 260 -50 630 199 26 33 chr6 31141765 31141960 -151273282 + L1MB8 LINE L1 5975 6178 0 2383 53 0 3 chr6 31142449 31142764 -151272478 + AluY SINE Alu 1 314 0 2017 128 0 29 chr6 31143540 31143846 -151271396 - AluJo SINE Alu -15 297 1 525 314 123 5 chr6 31143881 31144101 -151271141 + MIR SINE MIR 2 247 -15 22 0 0 0 chr6 31144110 31144132 -151271110 + AT_rich Low_complexity Low_complexity 1 22 0 3652 182 57 90 chr6 31144312 31145396 -151269846 - L1MD3 LINE L1 0 8042 7008 291 301 53 18 chr6 31145676 31145789 -151269453 + MIR SINE MIR 96 212 -50 199 170 128 0 chr6 31145879 31145926 -151269316 - MIR SINE MIR -114 148 96 27 0 0 0 chr6 31147948 31147975 -151267267 + AT_rich Low_complexity Low_complexity 1 27 0 2743 147 11 71 chr6 31148156 31148205 -151267037 + L1PB4 LINE L1 5656 5706 -450 2243 94 0 10 chr6 31148205 31148517 -151266725 - AluSx SINE Alu 0 309 1 2743 147 11 71 chr6 31148517 31148972 -151266270 + L1PB4 LINE L1 5706 6130 -26 1626 174 41 10 chr6 31148972 31149266 -151265976 - AluJo SINE Alu -9 303 1 2743 147 11 71 chr6 31149266 31149291 -151265951 + L1PB4 LINE L1 6130 6155 -1 2132 138 0 0 chr6 31150172 31150470 -151264772 - AluSx SINE Alu -3 309 12 773 153 0 32 chr6 31150591 31150715 -151264527 - FRAM SINE Alu -14 162 43 617 137 11 0 chr6 31151282 31151377 -151263865 + FRAM SINE Alu 75 170 -6 229 282 0 26 chr6 31151497 31151575 -151263667 + L1MC5 LINE L1 7832 7907 -54 236 218 69 89 chr6 31152546 31152647 -151262595 - MIR SINE MIR -40 222 124 507 214 29 86 chr6 31153326 31153369 -151261873 - MER5B DNA MER1_type -1 177 133 2283 93 7 0 chr6 31153369 31153670 -151261572 - AluSg SINE Alu -6 304 2 507 214 29 86 chr6 31153670 31153766 -151261476 - MER5B DNA MER1_type -45 133 46 2336 69 0 3 chr6 31154031 31154355 -151260887 + AluY SINE Alu 1 311 0 465 278 81 0 chr6 31154492 31154665 -151260577 + MIR SINE MIR 35 221 -41 2230 104 0 0 chr6 31154945 31155252 -151259990 + AluSc SINE Alu 1 307 0 963 167 42 0 chr6 31156079 31156247 -151258995 - AluSg/x SINE Alu -2 308 134 715 125 36 0 chr6 31156247 31156359 -151258883 + AluSg/x SINE Alu 182 297 -13 450 36 0 0 chr6 31156359 31156415 -151258827 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 500 231 319 0 chr6 31158559 31158741 -151256501 + MIR SINE MIR 23 262 0 1941 133 4 0 chr6 31158799 31159077 -151256165 + AluJb SINE Alu 1 279 -33 676 183 87 0 chr6 31159184 31159299 -151255943 - FLAM_A SINE Alu -6 127 3 249 266 43 32 chr6 31160175 31160269 -151254973 + MIR SINE MIR 123 217 -45 2335 105 0 6 chr6 31160524 31160838 -151254404 - AluSq SINE Alu 0 313 2 972 223 147 44 chr6 31161275 31161784 -151253458 - MLT1G LTR MaLR -5 537 3 709 126 0 9 chr6 31161926 31162037 -151253205 - L1MA3 LINE L1 0 6305 6196 2331 155 45 55 chr6 31162441 31162951 -151252291 - MLT1D LTR MaLR 0 505 1 2171 132 0 0 chr6 31163101 31163397 -151251845 - AluSx SINE Alu -16 296 1 229 337 35 0 chr6 31164563 31164649 -151250593 - L2 LINE L2 -31 3241 3153 335 219 248 0 chr6 31164787 31164892 -151250350 + MER94 DNA DNA 1 131 -3 1964 150 14 7 chr6 31164967 31165261 -151249981 - AluJb SINE Alu -16 296 1 195 42 0 0 chr6 31165843 31165867 -151249375 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 217 200 10 70 chr6 31169385 31169485 -151245757 + G-rich Low_complexity Low_complexity 5 98 0 197 163 0 23 chr6 31170132 31170175 -151245067 + MIR SINE MIR 113 154 -108 238 252 233 0 chr6 31170493 31170596 -151244646 + L2 LINE L2 3144 3270 -2 182 312 94 51 chr6 31171260 31171398 -151243844 - MIR3 SINE MIR -61 147 4 276 30 0 0 chr6 31171473 31171506 -151243736 + (TG)n Simple_repeat Simple_repeat 1 33 0 1884 118 0 8 chr6 31172375 31172637 -151242605 + AluSq SINE Alu 1 260 -53 232 48 48 0 chr6 31172642 31172684 -151242558 + (CAA)n Simple_repeat Simple_repeat 2 45 0 193 232 43 58 chr6 31172716 31172785 -151242457 - L2 LINE L2 -9 3304 3237 2349 84 0 32 chr6 31173677 31173985 -151241257 - AluSg SINE Alu -12 298 1 197 276 13 40 chr6 31174003 31174079 -151241163 - MER5A DNA MER1_type -3 186 113 351 310 152 6 chr6 31174296 31174454 -151240788 + MIR3 SINE MIR 20 200 -8 276 174 0 0 chr6 31175513 31175559 -151239683 - Charlie1 DNA MER1_type -15 2746 2701 * 336 295 0 0 chr6 31175545 31175623 -151239619 - Charlie1 DNA MER1_type -2679 82 5 2404 82 0 3 chr6 31175847 31176151 -151239091 - AluSg SINE Alu -7 303 1 350 308 147 0 chr6 31176332 31176488 -151238754 + LTR33 LTR ERVL 34 212 -309 1049 226 186 75 chr6 31179042 31179491 -151235751 + L2 LINE L2 2334 2731 -582 1914 149 0 14 chr6 31179491 31179786 -151235456 - AluSx SINE Alu -21 291 1 1049 226 186 75 chr6 31179786 31180136 -151235106 + L2 LINE L2 2731 3041 -272 213 39 0 0 chr6 31180136 31180162 -151235080 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2352 84 0 3 chr6 31180167 31180453 -151234789 - AluSx SINE Alu -27 285 1 1049 226 186 75 chr6 31180453 31180473 -151234769 + L2 LINE L2 3044 3311 -2 2132 128 7 3 chr6 31180900 31181204 -151234038 + AluSx SINE Alu 1 305 -7 3572 159 32 10 chr6 31181204 31181828 -151233414 - L1MB2 LINE L1 -13 6158 5521 2036 134 0 10 chr6 31181885 31182214 -151233028 + AluSx SINE Alu 1 326 0 1369 168 137 18 chr6 31183143 31183471 -151231771 - MER58D DNA MER1_type -3 383 17 2437 88 0 0 chr6 31183744 31184038 -151231204 + AluSc SINE Alu 1 294 -15 677 194 6 0 chr6 31185146 31185311 -151229931 + (CAT)n Simple_repeat Simple_repeat 2 167 0 * 743 159 7 0 chr6 31185282 31185433 -151229809 + (CCA)n Simple_repeat Simple_repeat 1 152 0 975 120 0 0 chr6 31185454 31185672 -151229570 + (CCA)n Simple_repeat Simple_repeat 1 218 0 567 239 0 0 chr6 31185699 31185866 -151229376 + (CCA)n Simple_repeat Simple_repeat 1 167 0 372 248 0 0 chr6 31185924 31186041 -151229201 + (CCA)n Simple_repeat Simple_repeat 2 118 0 258 235 0 47 chr6 31186042 31186127 -151229115 - MIR SINE MIR -110 152 72 1834 154 3 17 chr6 31188114 31188406 -151226836 + AluJb SINE Alu 1 288 -24 201 74 0 0 chr6 31190326 31190353 -151224889 + (CAT)n Simple_repeat Simple_repeat 3 29 0 267 31 0 0 chr6 31190637 31190669 -151224573 + (TG)n Simple_repeat Simple_repeat 1 32 0 209 146 21 0 chr6 31190669 31190717 -151224525 + GA-rich Low_complexity Low_complexity 2 50 0 209 171 0 0 chr6 31190754 31190789 -151224453 + CT-rich Low_complexity Low_complexity 2 36 0 375 315 40 7 chr6 31191278 31191427 -151223815 - MIR3 SINE MIR -38 170 17 538 280 126 5 chr6 31191568 31191775 -151223467 - MIR SINE MIR -27 235 4 2388 95 3 13 chr6 31193348 31193664 -151221578 + AluSq SINE Alu 1 313 0 330 107 0 0 chr6 31193674 31193730 -151221512 + (GA)n Simple_repeat Simple_repeat 1 56 0 222 37 0 0 chr6 31194746 31194773 -151220469 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 409 242 47 71 chr6 31195523 31195743 -151219499 + MER20B DNA MER1_type 1 219 0 21 0 0 0 chr6 31195872 31195893 -151219349 + AT_rich Low_complexity Low_complexity 1 21 0 486 236 55 0 chr6 31196006 31196145 -151219097 - MIR SINE MIR -63 145 44 2824 143 33 18 chr6 31196349 31196804 -151218438 + MLT1C LTR MaLR 6 467 0 258 312 0 0 chr6 31196815 31196892 -151218350 + MIR SINE MIR 169 245 -17 260 298 125 0 chr6 31196950 31197054 -151218188 - L3b LINE CR1 -270 1313 1197 308 299 60 12 chr6 31197168 31197335 -151217907 + L1MB8 LINE L1 5774 5948 -230 571 239 178 15 chr6 31197364 31197561 -151217681 - MIR SINE MIR -33 229 1 328 230 86 53 chr6 31197593 31197745 -151217497 - MER34B LTR ERV1 -183 382 226 367 143 48 24 chr6 31197857 31197941 -151217301 - MER34C LTR ERV1 -471 114 29 35 0 0 0 chr6 31198485 31198520 -151216722 + AT_rich Low_complexity Low_complexity 1 35 0 2154 103 0 26 chr6 31198974 31199276 -151215966 - AluSx SINE Alu -18 294 1 198 278 191 8 chr6 31199709 31199835 -151215407 + MIR SINE MIR 8 156 -106 367 310 30 10 chr6 31200496 31200696 -151214546 + Charlie2 DNA MER1_type 1855 2058 -804 3444 32 0 0 chr6 31200732 31201333 -151213909 - L1PA4 LINE L1 -498 5657 5057 4017 59 0 0 chr6 31201333 31201819 -151213423 + L1PA4 LINE L1 5659 6147 -8 5466 184 24 46 chr6 31201834 31202970 -151212272 + L1M4 LINE L1 -215 895 -5385 2087 221 37 71 chr6 31202958 31203198 -151212044 + L1M4 LINE L1 1323 1570 -4993 * 1709 130 28 0 chr6 31203198 31203482 -151211760 + L1MA4 LINE L1 6009 6300 0 2087 221 37 71 chr6 31203482 31204111 -151211131 + L1M4 LINE L1 1570 2302 -4261 936 195 43 17 chr6 31204133 31204364 -151210878 + Charlie2 DNA MER1_type 2040 2276 -586 27 29 0 0 chr6 31204378 31204412 -151210830 + AT_rich Low_complexity Low_complexity 1 34 0 2185 112 28 0 chr6 31204412 31204697 -151210545 - AluSx SINE Alu -19 293 1 1089 110 0 0 chr6 31204769 31204914 -151210328 + AluSg/x SINE Alu 155 299 -11 215 192 40 19 chr6 31205333 31205395 -151209847 + GA-rich Low_complexity Low_complexity 1 63 0 189 174 43 14 chr6 31206050 31206119 -151209123 + GA-rich Low_complexity Low_complexity 1 71 0 2518 87 3 0 chr6 31206841 31207153 -151208089 - AluSp SINE Alu 0 313 1 2035 187 66 0 chr6 31210701 31211108 -151204134 + MER63B DNA MER1_type 2 435 -1 980 201 3 106 chr6 31211270 31211374 -151203868 + MLT1A2 LTR MaLR 1 114 -260 2222 98 3 17 chr6 31211374 31211669 -151203573 + AluSp SINE Alu 1 291 -22 980 201 3 106 chr6 31211669 31211857 -151203385 + MLT1A2 LTR MaLR 114 263 -111 1378 211 63 46 chr6 31211898 31212336 -151202906 + MER39 LTR ERV1 67 707 0 587 150 50 0 chr6 31212349 31212449 -151202793 + MLT1A2 LTR MaLR 286 390 0 1922 161 28 0 chr6 31212779 31213070 -151202172 - AluJb SINE Alu -13 299 1 351 180 123 49 chr6 31213507 31213629 -151201613 - L1ME4a LINE L1 -21 6100 5970 22 0 0 0 chr6 31214021 31214043 -151201199 + AT_rich Low_complexity Low_complexity 1 22 0 2350 88 0 16 chr6 31214045 31214351 -151200891 + AluSx SINE Alu 1 301 -11 443 299 68 32 chr6 31214358 31214636 -151200606 - L1ME4a LINE L1 -2 6119 5832 30 0 0 0 chr6 31214789 31214819 -151200423 + AT_rich Low_complexity Low_complexity 1 30 0 580 288 47 33 chr6 31214824 31215036 -151200206 - MIR SINE MIR -35 227 13 889 203 21 10 chr6 31215559 31215751 -151199491 - MIR SINE MIR -10 252 59 225 361 17 8 chr6 31215795 31215914 -151199328 - L2 LINE L2 -159 3113 2994 2340 87 0 10 chr6 31215914 31216226 -151199016 + AluY SINE Alu 1 309 -2 234 274 167 27 chr6 31216254 31216517 -151198725 + L1ME LINE L1 5523 5822 -299 1277 197 4 17 chr6 31217036 31217275 -151197967 - MLT1C LTR MaLR -2 465 230 912 193 6 0 chr6 31217276 31217437 -151197805 - FRAM SINE Alu -14 162 1 945 143 26 2 chr6 31217440 31217632 -151197610 - MLT1C LTR MaLR -233 234 2 190 185 25 185 chr6 31218075 31218156 -151197086 + L2 LINE L2 3126 3193 -79 1610 181 10 91 chr6 31218492 31218844 -151196398 - MLT1A1 LTR MaLR 0 365 47 1806 166 0 13 chr6 31218844 31219152 -151196090 - AluJb SINE Alu -8 304 1 1610 181 10 91 chr6 31219152 31219196 -151196046 - MLT1A1 LTR MaLR -318 47 1 255 366 40 40 chr6 31219333 31219508 -151195734 - L2 LINE L2 -6 3266 3092 262 191 79 0 chr6 31219806 31219869 -151195373 + MIR SINE MIR 85 152 -56 712 276 60 13 chr6 31219913 31219956 -151195286 - MIR SINE MIR -13 249 209 2138 102 17 7 chr6 31219956 31220249 -151194993 - AluSx SINE Alu -16 296 1 712 276 60 13 chr6 31220249 31220437 -151194805 - MIR SINE MIR -53 209 7 2108 120 20 3 chr6 31221356 31221655 -151193587 - AluSq SINE Alu -9 304 1 247 267 0 0 chr6 31221829 31221915 -151193327 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 243 240 0 0 chr6 31222040 31222090 -151193152 + (TG)n Simple_repeat Simple_repeat 2 51 0 4181 223 68 8 chr6 31222179 31222259 -151192983 - L1MD2 LINE L1 -13 6346 6272 547 154 103 68 chr6 31222259 31222376 -151192866 - FLAM_A SINE Alu -12 121 1 4181 223 68 8 chr6 31222376 31222470 -151192772 - L1MD2 LINE L1 -87 6272 6185 297 0 0 0 chr6 31222470 31222503 -151192739 + (TG)n Simple_repeat Simple_repeat 2 34 0 4181 223 68 8 chr6 31222503 31223354 -151191888 - L1MD2 LINE L1 -174 6185 5258 292 135 14 40 chr6 31223379 31223453 -151191789 - L1MEd LINE L1 -5011 1108 1037 1861 170 23 7 chr6 31223453 31223759 -151191483 - AluJb SINE Alu 0 312 2 377 210 20 120 chr6 31223763 31223963 -151191279 - L1MEd LINE L1 -5169 950 771 311 309 36 36 chr6 31224021 31224189 -151191053 - L1ME3A LINE L1 -5 6165 5998 440 295 77 13 chr6 31225720 31225876 -151189366 - MIR3 SINE MIR -4 204 39 394 293 102 24 chr6 31226034 31226201 -151189041 - MIR SINE MIR -58 204 25 2218 112 24 0 chr6 31226232 31226528 -151188714 - AluSx SINE Alu -9 303 1 660 156 50 78 chr6 31226828 31226969 -151188273 + MER20 DNA MER1_type 1 137 -82 582 248 29 0 chr6 31226978 31227115 -151188127 - MER96 DNA MER1_type? -34 141 1 452 164 0 0 chr6 31227116 31227189 -151188053 + MER20 DNA MER1_type 126 198 -21 679 227 159 0 chr6 31227402 31227565 -151187677 - MER5A DNA MER1_type 0 189 1 458 266 110 7 chr6 31227583 31227737 -151187505 + MER5A DNA MER1_type 14 183 -6 280 294 121 43 chr6 31227995 31228226 -151187016 + L2 LINE L2 2809 3057 -256 537 152 76 0 chr6 31228227 31228319 -151186923 + L2 LINE L2 3214 3312 -1 192 325 35 53 chr6 31228786 31228900 -151186342 + MER5A DNA MER1_type 51 162 -27 774 244 26 30 chr6 31229125 31229359 -151185883 + MIR SINE MIR 6 238 -24 419 268 177 35 chr6 31229529 31229839 -151185403 + L3 LINE CR1 313 666 -911 402 299 0 16 chr6 31230166 31230293 -151184949 + MIR SINE MIR 84 208 -54 1039 269 153 60 chr6 31230449 31231170 -151184072 + L3 LINE CR1 781 1568 -9 218 191 0 24 chr6 31231373 31231415 -151183827 + GA-rich Low_complexity Low_complexity 1 41 0 4294 120 16 26 chr6 31231438 31231643 -151183599 + L1PA16 LINE L1 5332 5538 -628 2043 110 31 17 chr6 31231643 31231934 -151183308 + AluSc SINE Alu 1 295 -14 4294 120 16 26 chr6 31231934 31232419 -151182823 + L1PA16 LINE L1 5538 6143 -23 1675 152 55 10 chr6 31232432 31232721 -151182521 + AluJo SINE Alu 9 310 -2 4350 156 42 4 chr6 31232736 31233492 -151181750 + L1MB8 LINE L1 5386 6170 -8 1544 111 72 102 chr6 31233758 31233859 -151181383 + L1MA9 LINE L1 5990 6093 -219 848 158 0 0 chr6 31233859 31233979 -151181263 + FLAM_A SINE Alu 1 120 -13 1544 111 72 102 chr6 31233979 31234210 -151181032 + L1MA9 LINE L1 6092 6312 0 518 158 42 58 chr6 31234213 31234333 -151180909 + L1MB2 LINE L1 6052 6169 -2 248 366 112 12 chr6 31234378 31234629 -151180613 + L1MC/D LINE L1 5533 5808 -2000 195 321 0 0 chr6 31236578 31236634 -151178608 + MIR SINE MIR 92 147 -61 619 286 42 5 chr6 31236961 31237150 -151178092 + MIR SINE MIR 11 206 -56 204 40 0 0 chr6 31237603 31237628 -151177614 + (T)n Simple_repeat Simple_repeat 1 25 0 263 365 12 12 chr6 31238077 31238162 -151177080 + MIR SINE MIR 4 88 -174 855 306 25 4 chr6 31239973 31240215 -151175027 + MIR SINE MIR 12 258 -4 2585 130 23 32 chr6 31241071 31241510 -151173732 + LTR23 LTR ERV1 1 435 -2 402 162 0 0 chr6 31241510 31241584 -151173658 + (CA)n Simple_repeat Simple_repeat 2 75 0 1389 247 39 63 chr6 31241729 31241797 -151173445 + MLT1J LTR MaLR 1 69 -442 2409 98 0 0 chr6 31241797 31242104 -151173138 + AluSx SINE Alu 1 307 -5 1389 247 39 63 chr6 31242104 31242497 -151172745 + MLT1J LTR MaLR 69 451 -60 854 136 111 40 chr6 31242499 31242698 -151172544 - LTR7 LTR ERV1 0 450 238 382 194 125 119 chr6 31242766 31242874 -151172368 + MIR SINE MIR 88 199 -63 730 109 143 25 chr6 31242874 31242993 -151172249 + FLAM_A SINE Alu 1 133 0 382 194 125 119 chr6 31242993 31243044 -151172198 + MIR SINE MIR 199 248 -14 521 317 41 23 chr6 31244140 31244361 -151170881 + L3 LINE CR1 690 914 -663 950 197 115 18 chr6 31244438 31244656 -151170586 - MIR SINE MIR -14 248 10 628 308 181 33 chr6 31244826 31245139 -151170103 + L3 LINE CR1 932 1324 -253 1710 102 18 0 chr6 31245139 31245365 -151169877 + MER30 DNA MER1_type 1 230 0 628 308 181 33 chr6 31245365 31245470 -151169772 + L3 LINE CR1 1324 1412 -165 288 257 222 35 chr6 31245535 31245679 -151169563 + MIR SINE MIR 3 173 -89 321 256 108 72 chr6 31246196 31246473 -151168769 + MER31-int LTR ERV1 3173 3459 -1477 2109 103 55 0 chr6 31246506 31246796 -151168446 - AluSx SINE Alu -6 306 1 189 0 0 0 chr6 31246992 31247013 -151168229 + (TG)n Simple_repeat Simple_repeat 2 22 0 892 192 84 0 chr6 31247105 31247272 -151167970 + MER58A DNA MER1_type 38 218 -6 22 35 0 0 chr6 31247297 31247326 -151167916 + AT_rich Low_complexity Low_complexity 1 29 0 2176 120 0 3 chr6 31247618 31247917 -151167325 - AluSg SINE Alu -12 298 1 2053 103 65 3 chr6 31248085 31248377 -151166865 + AluSg SINE Alu 1 310 0 278 167 0 0 chr6 31250621 31250663 -151164579 + Tigger6 DNA MER2_type 1 42 -1041 2699 187 12 0 chr6 31250664 31251183 -151164059 + L1P LINE L1 4261 4785 -1361 709 190 45 34 chr6 31251377 31251556 -151163686 - L1P LINE L1 -2808 3338 3158 * 2121 150 0 8 chr6 31251538 31251898 -151163344 - L1P LINE L1 -3633 2513 2157 769 242 28 47 chr6 31251999 31252210 -151163032 + MER58A DNA MER1_type 1 207 -17 2572 53 0 3 chr6 31254123 31254424 -151160818 - AluY SINE Alu -11 300 1 224 333 73 10 chr6 31255140 31255236 -151160006 + L2 LINE L2 3142 3243 -29 939 226 0 0 chr6 31255398 31255575 -151159667 + MER5B DNA MER1_type 1 177 -1 190 339 0 16 chr6 31255596 31255658 -151159584 - L2 LINE L2 -5 3267 3207 1013 164 58 88 chr6 31255816 31256042 -151159200 - MER20 DNA MER1_type 0 219 1 230 152 22 22 chr6 31256069 31256115 -151159127 + MER5A DNA MER1_type 142 187 -2 657 206 213 0 chr6 31256129 31256284 -151158958 + MER5A DNA MER1_type 1 188 -1 206 379 8 8 chr6 31256822 31256946 -151158296 + L2 LINE L2 2665 2788 -526 241 191 0 0 chr6 31257289 31257331 -151157911 + MER96B DNA MER1_type? 194 235 -182 3148 136 19 35 chr6 31257473 31257881 -151157361 + MER41E LTR ERV1 5 405 -107 2384 81 0 3 chr6 31257881 31258178 -151157064 - AluY SINE Alu -15 296 1 3148 136 19 35 chr6 31258178 31258285 -151156957 + MER41E LTR ERV1 405 512 0 702 320 26 76 chr6 31258344 31258804 -151156438 + L2 LINE L2 2836 3272 0 231 170 20 140 chr6 31259404 31259504 -151155738 - L1MC4 LINE L1 -1341 6701 6614 286 278 0 11 chr6 31259506 31259596 -151155646 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 866 194 12 125 chr6 31259626 31259669 -151155573 - MER58A DNA MER1_type -2196 224 178 2401 80 0 7 chr6 31259669 31259969 -151155273 + AluSg SINE Alu 5 302 -8 866 194 12 125 chr6 31259969 31260009 -151155233 - MER58A DNA MER1_type -2242 178 135 2242 97 0 34 chr6 31260009 31260329 -151154913 - AluSc SINE Alu 0 309 1 866 194 12 125 chr6 31260329 31260492 -151154750 - MER58A DNA MER1_type -2285 135 5 375 23 0 0 chr6 31261706 31261750 -151153492 + (TTA)n Simple_repeat Simple_repeat 3 46 0 1866 158 0 7 chr6 31261754 31262052 -151153190 - AluJo SINE Alu -16 296 1 216 0 0 0 chr6 31263059 31263083 -151152159 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 216 216 0 0 chr6 31263097 31263148 -151152094 + (TG)n Simple_repeat Simple_repeat 2 52 0 414 0 0 0 chr6 31263308 31263354 -151151888 + (CA)n Simple_repeat Simple_repeat 2 47 0 429 20 0 0 chr6 31264016 31264066 -151151176 + (TA)n Simple_repeat Simple_repeat 2 51 0 269 252 79 39 chr6 31264380 31264507 -151150735 - L1ME4a LINE L1 -31 6090 5959 395 303 52 58 chr6 31264574 31264729 -151150513 - L2 LINE L2 0 3272 3119 361 303 68 28 chr6 31265981 31266232 -151149010 + L2 LINE L2 2142 2402 -912 39 22 0 0 chr6 31266336 31266382 -151148860 + AT_rich Low_complexity Low_complexity 1 46 0 477 194 184 0 chr6 31266430 31266528 -151148714 + MLT1D LTR MaLR 3 118 -387 814 75 0 9 chr6 31266531 31266637 -151148605 - AluSg SINE Alu -205 105 1 826 176 110 47 chr6 31266637 31266988 -151148254 + MLT1D LTR MaLR 105 505 0 289 331 87 9 chr6 31267180 31267353 -151147889 - MIR SINE MIR -17 191 17 2358 157 45 17 chr6 31268432 31268852 -151146390 + MSTB1 LTR MaLR 1 432 0 300 339 37 95 chr6 31269065 31269307 -151145935 - L2 LINE L2 -3 3269 3042 29 0 0 0 chr6 31269517 31269546 -151145696 + AT_rich Low_complexity Low_complexity 1 29 0 224 232 0 14 chr6 31269572 31269641 -151145601 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 4681 182 20 12 chr6 31270022 31271236 -151144006 + L1MB7 LINE L1 4960 6184 0 486 262 35 99 chr6 31271705 31272018 -151143224 - MER102a DNA MER1_type -34 296 4 277 284 0 25 chr6 31272077 31272158 -151143084 - L3 LINE CR1 -10 1567 1489 358 310 23 23 chr6 31272444 31272573 -151142669 - MIR3 SINE MIR -13 195 67 2214 98 13 10 chr6 31274218 31274523 -151140719 - AluSx SINE Alu -2 310 5 1973 88 91 0 chr6 31275384 31275647 -151139595 + AluSx SINE Alu 6 292 -20 181 333 0 0 chr6 31275841 31275895 -151139347 + L2 LINE L2 3004 3057 -215 492 237 62 23 chr6 31276874 31277051 -151138191 - L1MC5 LINE L1 -492 7469 7286 708 241 83 60 chr6 31277174 31277543 -151137699 - L1MC4 LINE L1 -740 7221 6880 582 261 147 50 chr6 31277625 31277809 -151137433 + L1ME4a LINE L1 5548 5713 -408 2337 82 3 22 chr6 31277809 31278125 -151137117 + AluY SINE Alu 1 310 -1 582 261 147 50 chr6 31278125 31278445 -151136797 + L1ME4a LINE L1 5713 6101 -20 2272 110 0 7 chr6 31279172 31279480 -151135762 - AluSx SINE Alu -6 306 1 2972 106 10 2 chr6 31279707 31280114 -151135128 + L1PB1 LINE L1 5740 6149 -2 2103 166 32 6 chr6 31280394 31280807 -151134435 - L1ME1 LINE L1 -3 6163 5746 1761 151 17 3 chr6 31280859 31281151 -151134091 - AluJo SINE Alu 0 312 17 31 0 0 0 chr6 31285452 31285483 -151129759 + AT_rich Low_complexity Low_complexity 1 31 0 598 265 50 46 chr6 31286729 31286948 -151128294 + MIR SINE MIR 31 250 -12 298 186 0 119 chr6 31286972 31287090 -151128152 + MIR SINE MIR 109 212 -50 2221 85 0 4 chr6 31287328 31287609 -151127633 + AluSc SINE Alu 1 280 -29 1165 41 0 20 chr6 31287609 31287755 -151127487 + AluY SINE Alu 168 310 -1 1416 153 82 125 chr6 31288841 31289005 -151126237 + L1ME1 LINE L1 5779 5948 -218 2096 128 6 6 chr6 31289005 31289317 -151125925 - AluSp SINE Alu 0 313 2 1803 140 46 14 chr6 31289319 31289604 -151125638 - 7SLRNA srpRNA srpRNA -26 294 1 1416 153 82 125 chr6 31289604 31289836 -151125406 + L1ME1 LINE L1 5949 6161 -5 195 42 0 0 chr6 31289878 31289902 -151125340 + (TA)n Simple_repeat Simple_repeat 2 25 0 407 116 58 0 chr6 31290019 31290140 -151125102 + (TA)n Simple_repeat Simple_repeat 1 128 0 1475 169 8 19 chr6 31291259 31291526 -151123716 + AluJo SINE Alu 30 293 -19 2660 234 66 31 chr6 31291564 31292395 -151122847 - L1MC4a LINE L1 -840 6968 6109 25 31 0 0 chr6 31292395 31292427 -151122815 + AT_rich Low_complexity Low_complexity 1 32 0 1532 173 28 28 chr6 31294691 31294999 -151120243 - AluJo SINE Alu 0 308 1 181 189 0 27 chr6 31295370 31295407 -151119835 - L2 LINE L2 -34 3238 3203 * 599 289 14 24 chr6 31295377 31295588 -151119654 - MIR SINE MIR -34 228 20 21 0 0 0 chr6 31295945 31295966 -151119276 + AT_rich Low_complexity Low_complexity 1 21 0 557 226 222 29 chr6 31296187 31296462 -151118780 + L1MC4 LINE L1 7715 8042 0 476 294 5 64 chr6 31296536 31296556 -151118686 + MER117 DNA MER1_type 1 21 -176 3332 178 110 2 chr6 31296556 31297146 -151118096 + MLT1E1 LTR MaLR 1 654 0 476 294 5 64 chr6 31297146 31297312 -151117930 + MER117 DNA MER1_type 21 176 -21 2232 108 7 0 chr6 31298427 31298723 -151116519 - AluSq SINE Alu -15 298 1 656 282 40 67 chr6 31298842 31298892 -151116350 + Charlie8 DNA MER1_type 76 126 -2291 2310 99 7 0 chr6 31298892 31299195 -151116047 - AluSq SINE Alu -5 308 4 656 282 40 67 chr6 31299195 31299442 -151115800 + Charlie8 DNA MER1_type 126 365 -2052 435 233 0 0 chr6 31300731 31300821 -151114421 + L2 LINE L2 3224 3313 0 1531 185 73 0 chr6 31301133 31301420 -151113822 + AluJo SINE Alu 1 308 -4 226 300 136 0 chr6 31301949 31302112 -151113130 + MIR SINE MIR 4 192 -42 532 295 71 27 chr6 31302189 31302413 -151112829 + MIR SINE MIR 12 245 -17 338 221 47 47 chr6 31302424 31302510 -151112732 + MIR SINE MIR 68 153 -55 1372 155 9 0 chr6 31302533 31302746 -151112496 - MLT1D LTR MaLR 0 505 291 13210 176 17 69 chr6 31302989 31305303 -151109939 + L1PA16 LINE L1 2746 5181 -2423 1851 171 10 3 chr6 31305303 31305608 -151109634 - THE1B LTR MaLR 0 364 58 13210 176 17 69 chr6 31305608 31305760 -151109482 + L1PA16 LINE L1 5181 5339 -2265 1909 161 0 23 chr6 31305760 31306070 -151109172 + AluJo SINE Alu 3 305 -7 13210 176 17 69 chr6 31306070 31308488 -151106754 + L1PA16 LINE L1 5339 7604 0 211 362 14 43 chr6 31309793 31309931 -151105311 - MIR SINE MIR -11 251 118 764 238 116 11 chr6 31309966 31310155 -151105087 - MIR SINE MIR -51 211 3 247 331 69 8 chr6 31310266 31310396 -151104846 - MIR3 SINE MIR 0 208 71 197 344 102 6 chr6 31310643 31310800 -151104442 + L2 LINE L2 2358 2529 -785 3548 104 18 52 chr6 31310804 31311435 -151103807 - MER4B LTR ERV1 0 779 1 1695 222 110 81 chr6 31311657 31312377 -151102865 - LTR1B LTR ERV1 -85 741 1 382 320 62 6 chr6 31312892 31313070 -151102172 - MIR3 SINE MIR -1 207 20 274 280 57 117 chr6 31313466 31313554 -151101688 - L2 LINE L2 -50 3222 3130 1232 196 106 40 chr6 31313554 31313625 -151101617 - MER2 DNA MER2_type 0 344 279 2481 63 3 0 chr6 31313625 31313927 -151101315 + AluY SINE Alu 1 303 -8 1232 196 106 40 chr6 31313927 31314177 -151101065 - MER2 DNA MER2_type -65 279 2 274 280 57 117 chr6 31314177 31314474 -151100768 - L2 LINE L2 -142 3130 2860 263 270 0 0 chr6 31315028 31315091 -151100151 - MIR SINE MIR -10 252 190 515 211 200 0 chr6 31315193 31315288 -151099954 - MER81 DNA DNA 0 114 1 305 299 162 46 chr6 31315566 31315961 -151099281 + LTR67 LTR ERVL 105 545 -12 466 261 17 0 chr6 31316011 31316126 -151099116 + MER117 DNA MER1_type 47 163 -34 785 273 0 4 chr6 31317278 31317505 -151097737 + L1M4 LINE L1 4153 4378 -1768 1979 146 0 28 chr6 31317509 31317653 -151097589 + AluJo SINE Alu 1 148 -164 2568 62 0 3 chr6 31317653 31317958 -151097284 + AluY SINE Alu 1 304 -7 1979 146 0 28 chr6 31317958 31318134 -151097108 + AluJo SINE Alu 148 312 0 237 33 0 0 chr6 31318153 31318183 -151097059 + (CAA)n Simple_repeat Simple_repeat 1 30 0 498 338 57 9 chr6 31318348 31318587 -151096655 + MIR SINE MIR 10 259 -3 2050 180 189 2 chr6 31319004 31319398 -151095844 + MLT2B2 LTR ERVL 1 485 -30 479 71 47 0 chr6 31319398 31319483 -151095759 + (TCTA)n Simple_repeat Simple_repeat 3 91 0 2050 180 189 2 chr6 31319483 31319522 -151095720 + MLT2B2 LTR ERVL 485 515 0 743 254 106 35 chr6 31319694 31319977 -151095265 + LTR16A1 LTR ERVL 155 457 0 1170 185 91 4 chr6 31320484 31320620 -151094622 - L1MA9 LINE L1 -4 6308 6185 405 103 0 0 chr6 31320620 31320688 -151094554 + (TG)n Simple_repeat Simple_repeat 1 68 0 1170 185 91 4 chr6 31320688 31320805 -151094437 - L1MA9 LINE L1 -127 6185 6033 1243 307 139 6 chr6 31321337 31321855 -151093387 - MLT1K LTR MaLR 0 588 2 1688 108 14 0 chr6 31322082 31322304 -151092938 + AluSp SINE Alu 1 225 -88 200 278 137 41 chr6 31322620 31322774 -151092468 - MIR SINE MIR -68 140 5 522 267 23 0 chr6 31322970 31323101 -151092141 + MER94 DNA DNA 1 134 0 290 246 29 0 chr6 31323412 31323481 -151091761 + MIR SINE MIR 79 149 -113 * 637 314 32 0 chr6 31323477 31323665 -151091577 - MIR SINE MIR -1 261 68 2324 118 0 0 chr6 31323785 31324089 -151091153 - AluSx SINE Alu -8 304 1 554 277 185 5 chr6 31324396 31324591 -151090651 + MIR SINE MIR 32 261 -1 2413 86 0 3 chr6 31324612 31324916 -151090326 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr6 31325213 31325235 -151090007 + AT_rich Low_complexity Low_complexity 1 22 0 225 296 0 42 chr6 31325575 31325646 -151089596 + MIR SINE MIR 85 152 -110 1086 65 0 0 chr6 31326103 31326242 -151089000 - AluY SINE Alu -11 300 162 180 0 0 0 chr6 31327999 31328019 -151087223 + (A)n Simple_repeat Simple_repeat 1 20 0 595 202 0 18 chr6 31328660 31328774 -151086468 + FLAM_A SINE Alu 4 115 -18 487 94 0 24 chr6 31328778 31328863 -151086379 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 213 237 0 0 chr6 31330234 31330293 -151084949 + (CA)n Simple_repeat Simple_repeat 2 60 0 15188 122 34 24 chr6 31330307 31331832 -151083410 - Tigger1 DNA MER2_type 0 2418 909 2598 86 12 3 chr6 31331832 31332169 -151083073 - L1PB1 LINE L1 0 6151 5812 6324 70 11 2 chr6 31332173 31333297 -151081945 - L1PA7 LINE L1 -3 6151 4955 15188 122 34 24 chr6 31333297 31334161 -151081081 - Tigger1 DNA MER2_type -1511 907 1 559 198 0 0 chr6 31334468 31334554 -151080688 - FRAM/FAM SINE Alu -98 78 1 1101 238 129 75 chr6 31334557 31334754 -151080488 - Charlie1a DNA MER1_type -2254 507 322 2475 75 0 0 chr6 31334754 31335061 -151080181 - AluY SINE Alu -2 309 3 1101 238 129 75 chr6 31335061 31335343 -151079899 - Charlie1a DNA MER1_type -2439 322 2 2325 99 13 0 chr6 31335346 31335649 -151079593 + AluSg SINE Alu 1 307 -3 1650 215 55 21 chr6 31335649 31336121 -151079121 - L1ME LINE L1 -350 5812 5297 1633 239 130 9 chr6 31336237 31336697 -151078545 - L1ME1 LINE L1 -19 6147 5632 2000 252 106 76 chr6 31336707 31337343 -151077899 - L1ME LINE L1 -982 5164 4549 2264 118 0 0 chr6 31337343 31337647 -151077595 + AluSx SINE Alu 1 304 -8 2000 252 106 76 chr6 31337647 31338259 -151076983 - L1ME LINE L1 -1597 4549 3861 1453 144 32 60 chr6 31338259 31338543 -151076699 - AluJb SINE Alu -34 278 3 2000 252 106 76 chr6 31338543 31338788 -151076454 - L1ME LINE L1 -2285 3861 3625 377 243 136 11 chr6 31339020 31339197 -151076045 - L2 LINE L2 -737 2577 2379 359 254 63 16 chr6 31339205 31339331 -151075911 - L2 LINE L2 -2305 1009 878 660 260 128 0 chr6 31340414 31340618 -151074624 - MIR SINE MIR -4 258 29 215 294 12 47 chr6 31341306 31341391 -151073851 - MIR3 SINE MIR -21 187 106 280 370 143 0 chr6 31341467 31341586 -151073656 - L2 LINE L2 -38 3234 3099 2208 105 7 3 chr6 31341682 31341986 -151073256 - AluSq SINE Alu -8 305 1 2058 121 4 0 chr6 31342343 31342624 -151072618 - AluSx SINE Alu -30 282 1 468 318 121 32 chr6 31343149 31343499 -151071743 + L1ME4a LINE L1 5473 5854 -267 356 201 187 30 chr6 31343557 31343691 -151071551 + L1ME4a LINE L1 5964 6118 -3 312 314 0 0 chr6 31343952 31344057 -151071185 + L1MC4a LINE L1 5793 5897 -1911 21 0 0 0 chr6 31344118 31344139 -151071103 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 31344474 31344507 -151070735 + AT_rich Low_complexity Low_complexity 1 33 0 851 183 221 0 chr6 31345427 31345635 -151069607 + MIR SINE MIR 8 261 -1 295 299 131 19 chr6 31345806 31345913 -151069329 + MIR3 SINE MIR 15 133 -75 493 294 103 90 chr6 31346379 31346924 -151068318 - L2 LINE L2 -756 2558 2007 287 266 0 0 chr6 31347508 31347587 -151067655 + Charlie8 DNA MER1_type 74 152 -2265 313 268 24 39 chr6 31347809 31347936 -151067306 + HAL1 LINE L1 1464 1588 -919 236 255 57 78 chr6 31347979 31348171 -151067071 + HAL1 LINE L1 1761 1948 -559 23 54 0 0 chr6 31348467 31348504 -151066738 + AT_rich Low_complexity Low_complexity 1 37 0 913 275 29 8 chr6 31348573 31348817 -151066425 + MIR SINE MIR 10 258 -4 2243 107 3 0 chr6 31348920 31349218 -151066024 - AluSq SINE Alu -12 301 3 483 182 67 120 chr6 31349913 31350122 -151065120 + L1MC3 LINE L1 7581 7778 -7 330 132 0 0 chr6 31350122 31350175 -151065067 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 248 204 0 19 chr6 31352389 31352443 -151062799 + L2 LINE L2 3261 3313 0 270 0 0 0 chr6 31352797 31352827 -151062415 + (A)n Simple_repeat Simple_repeat 1 30 0 268 313 103 43 chr6 31352828 31353179 -151062063 + L2 LINE L2 2503 2874 -440 357 255 112 10 chr6 31353193 31353291 -151061951 + L2 LINE L2 3202 3309 -4 494 280 8 23 chr6 31353599 31353731 -151061511 + MER5A DNA MER1_type 60 189 0 534 269 141 22 chr6 31353945 31354088 -151061154 + MER112 DNA MER1_type 1 126 -134 225 94 0 0 chr6 31354088 31354120 -151061122 + (CTATT)n Simple_repeat Simple_repeat 4 35 0 534 269 141 22 chr6 31354120 31354203 -151061039 + MER112 DNA MER1_type 126 254 -6 270 373 16 10 chr6 31354220 31354413 -151060829 - L2 LINE L2 -652 2662 2469 2320 104 0 0 chr6 31354936 31355234 -151060008 + AluSg SINE Alu 1 298 -12 531 322 55 5 chr6 31355827 31356029 -151059213 - MIR SINE MIR -27 235 24 2416 78 0 23 chr6 31356124 31356432 -151058810 + AluSq SINE Alu 1 301 -12 1296 174 5 9 chr6 31356483 31356725 -151058517 - AluJo SINE Alu 0 307 67 2133 113 7 3 chr6 31356735 31357028 -151058214 - AluSx SINE Alu -18 294 1 189 291 93 23 chr6 31357595 31357681 -151057561 + MIR SINE MIR 97 188 -74 240 302 176 14 chr6 31357759 31358054 -151057188 + L2 LINE L2 2484 2826 -488 1937 143 0 37 chr6 31359106 31359427 -151055815 + AluSx SINE Alu 2 310 -2 216 0 0 0 chr6 31359550 31359574 -151055668 + (T)n Simple_repeat Simple_repeat 1 24 0 3353 201 31 86 chr6 31359574 31360864 -151054378 - L1ME1 LINE L1 -36 6130 4933 1876 120 0 45 chr6 31360864 31361156 -151054086 + AluY SINE Alu 1 279 -32 3353 201 31 86 chr6 31361156 31361615 -151053627 - L1ME1 LINE L1 -1233 4933 4450 4068 154 72 89 chr6 31362541 31363268 -151051974 - Charlie5 DNA MER1_type -5 2619 1915 1603 192 67 88 chr6 31363268 31363743 -151051499 + MLT1C LTR MaLR 1 465 -2 4068 154 72 89 chr6 31363743 31364120 -151051122 - Charlie5 DNA MER1_type -709 1915 1533 489 265 83 28 chr6 31364197 31364378 -151050864 + MIR SINE MIR 2 192 -70 502 268 98 7 chr6 31365218 31365371 -151049871 + MIR SINE MIR 10 176 -86 1115 269 67 53 chr6 31365380 31365871 -151049371 - L2 LINE L2 0 3313 2816 248 0 31 0 chr6 31370483 31370515 -151044727 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 297 232 37 49 chr6 31371000 31371082 -151044160 + MER58B DNA MER1_type 1 81 -260 1273 185 23 8 chr6 31371101 31371366 -151043876 + MER58B DNA MER1_type 60 328 -13 967 237 40 4 chr6 31371466 31371719 -151043523 - L1PB4 LINE L1 -1 6155 5894 1783 163 67 9 chr6 31373737 31374080 -151041162 + MER47B DNA MER2_type 56 418 0 536 278 195 10 chr6 31374508 31374713 -151040529 + MIR SINE MIR 20 262 0 262 83 0 0 chr6 31374910 31374946 -151040296 - U2 snRNA snRNA -152 36 1 353 262 78 35 chr6 31375583 31375724 -151039518 + L1ME LINE L1 5409 5555 -566 204 40 0 0 chr6 31375782 31375807 -151039435 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 374 263 84 21 chr6 31376004 31376199 -151039043 - L1ME3A LINE L1 -232 5938 5733 751 199 0 0 chr6 31376273 31376404 -151038838 + FLAM_A SINE Alu 1 131 -2 226 299 120 11 chr6 31376449 31376723 -151038519 - L1ME3A LINE L1 -591 5587 5284 340 318 25 61 chr6 31376729 31376927 -151038315 - L1ME3A LINE L1 -869 5277 5087 363 237 11 0 chr6 31377351 31377444 -151037798 + L1MC4 LINE L1 2572 2665 -3481 3381 195 126 31 chr6 31377486 31377653 -151037589 + L1MC4 LINE L1 3807 3957 -2189 2362 91 7 0 chr6 31377653 31377950 -151037292 + AluSx SINE Alu 1 299 -13 3381 195 126 31 chr6 31377950 31378949 -151036293 + L1MC4 LINE L1 3957 5084 -1062 1704 172 0 4 chr6 31378978 31379245 -151035997 + AluJb SINE Alu 8 273 -39 320 189 116 0 chr6 31379352 31379447 -151035795 + L1MC4 LINE L1 5088 5193 -953 * 1394 217 125 17 chr6 31379444 31379924 -151035318 + L1MC4 LINE L1 5478 6009 -2033 * 1825 156 23 23 chr6 31379675 31380072 -151035170 + L1MB7 LINE L1 5767 6163 -21 216 261 0 0 chr6 31380076 31380141 -151035101 + GA-rich Low_complexity Low_complexity 2 66 0 30 0 0 0 chr6 31380244 31380274 -151034968 + AT_rich Low_complexity Low_complexity 1 30 0 505 299 51 56 chr6 31380654 31380888 -151034354 - MIR SINE MIR -29 233 1 1879 124 0 8 chr6 31381640 31381899 -151033343 - AluSq SINE Alu -56 257 1 314 272 98 54 chr6 31383525 31383709 -151031533 + L1MC4a LINE L1 5870 6061 -1747 5064 123 16 13 chr6 31383738 31384556 -151030686 + HSMAR2 DNA Mariner 263 1082 -220 2599 61 0 0 chr6 31384556 31384867 -151030375 + AluY SINE Alu 1 311 0 471 198 123 6 chr6 31385347 31385509 -151029733 - MER53 DNA DNA -8 181 1 840 272 15 42 chr6 31386556 31386817 -151028425 - MIR SINE MIR -4 258 5 475 186 8 25 chr6 31387086 31387204 -151028038 - MER53 DNA DNA -73 116 1 544 134 21 10 chr6 31387242 31387339 -151027903 + MER4A LTR ERV1 1 98 -566 1809 130 0 24 chr6 31387339 31387693 -151027549 + MER4A LTR ERV1 261 664 0 2310 76 104 51 chr6 31387696 31388353 -151026889 + MER4A-int LTR ERV1 1 807 -5791 315 49 0 0 chr6 31388354 31388395 -151026847 + (CA)n Simple_repeat Simple_repeat 1 41 0 201 121 0 0 chr6 31388427 31388460 -151026782 + (A)n Simple_repeat Simple_repeat 1 33 0 253 75 0 50 chr6 31388478 31388518 -151026724 + LTR49 LTR ERV1 276 313 -282 7402 114 62 28 chr6 31388538 31389640 -151025602 + MER4A-int LTR ERV1 993 2056 -4542 2144 104 0 7 chr6 31389640 31389919 -151025323 + AluSq SINE Alu 1 277 -36 300 27 0 0 chr6 31389927 31389964 -151025278 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 7402 114 62 28 chr6 31389964 31390305 -151024937 + MER4A-int LTR ERV1 2062 2495 -4103 1239 148 68 40 chr6 31390305 31390555 -151024687 - LTR8 LTR ERV1 -434 257 1 2615 126 69 71 chr6 31390555 31391000 -151024242 + MER4A-int LTR ERV1 2737 3181 -3417 2322 122 0 0 chr6 31391000 31391312 -151023930 + AluSx SINE Alu 1 312 0 2615 126 69 71 chr6 31391312 31391722 -151023520 + MER4A-int LTR ERV1 3181 3681 -2917 * 15475 97 56 19 chr6 31391721 31394383 -151020859 + MER4A-int LTR ERV1 3837 6596 -2 402 205 0 12 chr6 31394400 31394483 -151020759 + MER4A LTR ERV1 17 98 -566 1707 147 26 11 chr6 31394483 31394823 -151020419 + MER4A LTR ERV1 261 664 0 231 189 0 0 chr6 31395281 31395334 -151019908 + G-rich Low_complexity Low_complexity 4 56 0 258 160 0 0 chr6 31395488 31395538 -151019704 + (CA)n Simple_repeat Simple_repeat 2 51 0 462 49 0 0 chr6 31395619 31395680 -151019562 + (CA)n Simple_repeat Simple_repeat 1 61 0 22 56 0 0 chr6 31399949 31399985 -151015257 + AT_rich Low_complexity Low_complexity 1 36 0 428 219 66 70 chr6 31400072 31400194 -151015048 + MER96B DNA MER1_type? 191 313 -104 2306 112 0 0 chr6 31400194 31400499 -151014743 + AluSx SINE Alu 1 305 -7 428 219 66 70 chr6 31400499 31400604 -151014638 + MER96B DNA MER1_type? 313 417 0 272 208 0 0 chr6 31401282 31401335 -151013907 + L2 LINE L2 3261 3313 0 3122 220 30 53 chr6 31401408 31401666 -151013576 + L1M4 LINE L1 3039 3301 -2845 849 134 0 0 chr6 31401666 31401785 -151013457 + AluJo/FLAM SINE Alu 1 119 -183 1906 157 0 13 chr6 31401787 31402087 -151013155 + AluJb SINE Alu 4 299 -13 3122 220 30 53 chr6 31402087 31402821 -151012421 + L1M4 LINE L1 3302 4011 -2135 1135 260 3 24 chr6 31402821 31402960 -151012282 + AluJo SINE Alu 1 141 -171 2313 104 3 0 chr6 31402960 31403258 -151011984 + AluSx SINE Alu 2 300 -12 1135 260 3 24 chr6 31403258 31403406 -151011836 + AluJo SINE Alu 141 282 -30 207 88 0 0 chr6 31403409 31403443 -151011799 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 841 229 10 0 chr6 31403458 31403663 -151011579 + L1M4 LINE L1 4044 4250 -1896 * 1638 161 124 58 chr6 31403662 31404097 -151011145 + L1MC3 LINE L1 7134 7597 -188 1577 273 53 39 chr6 31404098 31404357 -151010885 + L1ME3A LINE L1 4132 4386 -1784 1948 89 19 0 chr6 31404357 31404616 -151010626 + AluSq SINE Alu 44 307 -6 1577 273 53 39 chr6 31404616 31406178 -151009064 + L1ME3A LINE L1 4386 5951 -219 1701 242 35 27 chr6 31406270 31407435 -151007807 + L1MB7 LINE L1 2969 4335 -1811 1210 228 188 73 chr6 31407755 31408204 -151007038 + L2 LINE L2 2334 2730 -583 1874 149 0 17 chr6 31408204 31408500 -151006742 - AluSx SINE Alu -21 291 1 1210 228 188 73 chr6 31408500 31408850 -151006392 + L2 LINE L2 2730 3295 -18 2390 98 3 13 chr6 31408850 31409165 -151006077 - AluSx SINE Alu 0 312 1 2043 125 4 0 chr6 31409522 31409803 -151005439 - AluSx SINE Alu -30 282 1 381 313 115 35 chr6 31410341 31410654 -151004588 + L1ME4a LINE L1 5488 5825 -296 303 190 181 35 chr6 31410754 31410870 -151004372 + L1ME4a LINE L1 5986 6118 -3 272 314 0 0 chr6 31411131 31411236 -151004006 + L1MC4a LINE L1 5793 5897 -1911 21 0 0 0 chr6 31411297 31411318 -151003924 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 31411653 31411686 -151003556 + AT_rich Low_complexity Low_complexity 1 33 0 2089 204 111 7 chr6 31412034 31412627 -151002615 + L1MB7 LINE L1 4395 5049 -1097 1397 222 108 34 chr6 31412632 31413132 -151002110 - LTR55 LTR ERV -3 545 9 529 117 0 0 chr6 31413135 31413212 -151002030 + MADE1 DNA Mariner 3 79 -1 3401 180 48 31 chr6 31413220 31413502 -151001740 + L1MB7 LINE L1 5046 5322 -862 809 172 0 8 chr6 31413502 31413636 -151001606 + FLAM_A SINE Alu 1 133 0 3401 180 48 31 chr6 31413636 31414463 -151000779 + L1MB7 LINE L1 5322 6184 0 344 217 105 66 chr6 31414470 31414622 -151000620 + L1ME3A LINE L1 6005 6162 -8 852 196 35 47 chr6 31415021 31415236 -151000006 - L1MD3 LINE L1 -9 7986 7770 186 43 0 0 chr6 31415236 31415259 -150999983 + (TG)n Simple_repeat Simple_repeat 2 24 0 852 196 35 47 chr6 31415259 31415312 -150999930 - L1MD3 LINE L1 -225 7770 6084 29 0 0 0 chr6 31416363 31416392 -150998850 + AT_rich Low_complexity Low_complexity 1 29 0 233 290 29 0 chr6 31416721 31416790 -150998452 - L2 LINE L2 -1 3312 3242 2513 146 166 42 chr6 31417305 31417855 -150997387 + LTR35 LTR ERV1 1 618 0 787 200 0 25 chr6 31418924 31419084 -150996158 + FRAM SINE Alu 7 162 -14 372 252 27 31 chr6 31419085 31419264 -150995978 - L1MD2 LINE L1 -167 6075 5894 661 303 173 30 chr6 31419356 31419963 -150995279 + L2 LINE L2 2001 2694 -620 496 190 60 0 chr6 31419977 31420077 -150995165 - L1MA2 LINE L1 0 6304 6199 3667 96 54 19 chr6 31420356 31421040 -150994202 + MER11A LTR ERVK 1 752 -484 43225 55 4 2 chr6 31421048 31427183 -150988059 + L1PA5 LINE L1 11 6152 -2 204 22 43 65 chr6 31427194 31427240 -150988002 + (TAA)n Simple_repeat Simple_repeat 1 45 0 376 113 0 84 chr6 31427243 31427314 -150987928 + MER11A LTR ERVK 912 976 -290 2300 78 6 58 chr6 31427323 31427670 -150987572 + MER11A LTR ERVK 937 1265 -1 371 263 135 46 chr6 31427679 31427795 -150987447 + L2 LINE L2 3008 3112 -160 2366 65 0 45 chr6 31427795 31428104 -150987138 - AluY SINE Alu -16 295 1 371 263 135 46 chr6 31428104 31428268 -150986974 + L2 LINE L2 3112 3272 0 411 21 0 0 chr6 31429589 31429637 -150985605 + (TG)n Simple_repeat Simple_repeat 2 49 0 198 281 145 41 chr6 31529955 31530176 -150885066 + L2 LINE L2 1868 2111 -1203 314 198 62 37 chr6 31530189 31530270 -150884972 + L2 LINE L2 2214 2296 -1018 533 328 165 18 chr6 31530313 31530916 -150884326 + L2 LINE L2 2401 3085 -187 245 348 206 9 chr6 31531018 31531251 -150883991 + L2 LINE L2 2994 3272 0 275 297 0 0 chr6 31533276 31533340 -150881902 + L2 LINE L2 3242 3305 -8 336 172 0 91 chr6 31533915 31534014 -150881228 + CT-rich Low_complexity Low_complexity 2 91 0 340 309 127 34 chr6 31534169 31534196 -150881046 - MIR SINE MIR 0 262 239 213 39 0 0 chr6 31534196 31534222 -150881020 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 340 309 127 34 chr6 31534222 31534430 -150880812 - MIR SINE MIR -23 239 5 590 266 133 5 chr6 31535405 31535623 -150879619 + MIR SINE MIR 1 246 -16 2352 91 0 19 chr6 31535656 31535963 -150879279 + AluSq SINE Alu 1 301 -12 1123 276 96 13 chr6 31536048 31536498 -150878744 + L2 LINE L2 720 1206 -2108 286 205 171 26 chr6 31536548 31536665 -150878577 + L2 LINE L2 1705 1838 -1476 2092 141 3 3 chr6 31536761 31537067 -150878175 - AluSx SINE Alu -6 306 1 294 306 10 0 chr6 31537178 31537276 -150877966 - L1ME3A LINE L1 -208 5962 5864 2761 252 140 36 chr6 31537290 31537595 -150877647 + L2 LINE L2 1826 2098 -1215 2208 113 7 7 chr6 31537595 31537895 -150877347 - AluSx SINE Alu -12 300 1 2761 252 140 36 chr6 31537895 31538913 -150876329 + L2 LINE L2 2098 3313 0 246 264 104 9 chr6 31539449 31539555 -150875687 + MIR SINE MIR 145 260 -2 290 304 78 46 chr6 31539557 31539641 -150875601 - MIR SINE MIR 0 262 182 1843 167 14 10 chr6 31539641 31539935 -150875307 - AluJo SINE Alu -17 295 1 290 304 78 46 chr6 31539935 31540076 -150875166 - MIR SINE MIR -80 182 34 256 208 21 0 chr6 31540509 31540557 -150874685 + MER91 DNA MER1_type 74 122 -18 374 357 7 0 chr6 31541669 31541823 -150873419 + (TATG)n Simple_repeat Simple_repeat 2 156 0 222 227 76 30 chr6 31541889 31541955 -150873287 - MIR SINE MIR -187 75 7 21 57 0 0 chr6 31544030 31544065 -150871177 + GC_rich Low_complexity Low_complexity 1 35 0 1277 265 123 37 chr6 31546088 31546313 -150868929 + L1MB2 LINE L1 4494 4698 -1466 851 163 0 15 chr6 31546313 31546448 -150868794 + FLAM_A SINE Alu 1 133 0 1277 265 123 37 chr6 31546448 31546865 -150868377 + L1MB2 LINE L1 4698 5225 -939 2409 85 7 3 chr6 31546865 31547170 -150868072 + AluSg SINE Alu 1 306 -4 1277 265 123 37 chr6 31547170 31547418 -150867824 + L1MB2 LINE L1 5225 5450 -714 2942 128 66 80 chr6 31547419 31547852 -150867390 + L1MB2 LINE L1 5515 5952 -219 2212 120 13 0 chr6 31547852 31548151 -150867091 + AluSx SINE Alu 1 303 -9 2942 128 66 80 chr6 31548151 31548272 -150866970 + L1MB2 LINE L1 5952 6061 -110 2416 91 0 0 chr6 31548272 31548568 -150866674 + AluSg SINE Alu 1 296 -14 2942 128 66 80 chr6 31548568 31548675 -150866567 + L1MB2 LINE L1 6061 6168 -3 770 179 0 0 chr6 31548688 31548800 -150866442 + FLAM_C SINE Alu 6 117 -26 2701 213 66 18 chr6 31548800 31549523 -150865719 + L1ME3A LINE L1 5409 6162 -8 180 0 0 0 chr6 31549580 31549600 -150865642 + (TC)n Simple_repeat Simple_repeat 1 20 0 180 125 0 0 chr6 31551420 31551452 -150863790 + (T)n Simple_repeat Simple_repeat 1 32 0 427 291 163 31 chr6 31552103 31552392 -150862850 - L2 LINE L2 -438 2876 2550 2504 73 0 6 chr6 31552494 31552807 -150862435 + AluY SINE Alu 1 311 0 228 122 143 0 chr6 31552819 31552868 -150862374 - MLT1J LTR MaLR -58 453 398 2648 55 0 3 chr6 31553058 31553366 -150861876 - AluY SINE Alu -4 307 1 892 216 226 5 chr6 31553473 31553859 -150861383 - MER90 LTR ERV1 -140 435 9 2123 120 0 13 chr6 31553963 31554262 -150860980 + AluSx SINE Alu 1 295 -17 289 296 22 59 chr6 31554306 31554441 -150860801 - L2 LINE L2 -1164 2150 2021 204 217 0 87 chr6 31554443 31554512 -150860730 - MIR SINE MIR -24 238 176 1730 63 5 5 chr6 31554538 31554744 -150860498 - AluSq SINE Alu -107 206 1 1072 269 106 44 chr6 31554752 31555150 -150860092 - L2 LINE L2 -3 3310 2938 1624 187 53 3 chr6 31555150 31555434 -150859808 + AluJo SINE Alu 1 298 -14 1072 269 106 44 chr6 31555434 31555581 -150859661 - L2 LINE L2 -375 2938 2802 2411 95 0 0 chr6 31555581 31555885 -150859357 - AluSg SINE Alu -6 304 1 1072 269 106 44 chr6 31555885 31556063 -150859179 - L2 LINE L2 -511 2802 2530 983 240 43 43 chr6 31556059 31556363 -150858879 + L2 LINE L2 2398 2701 -613 * 2449 87 0 6 chr6 31556389 31556700 -150858542 + AluSg SINE Alu 1 309 -1 816 167 0 15 chr6 31556700 31556832 -150858410 - AluJo/FLAM SINE Alu -182 130 1 2246 75 0 4 chr6 31556841 31557151 -150858091 - AluY SINE Alu 0 313 5 854 296 113 21 chr6 31557151 31557700 -150857542 + L2 LINE L2 2683 3313 0 1123 286 206 11 chr6 31557724 31558291 -150856951 - L2 LINE L2 -807 2507 1830 181 264 94 0 chr6 31558307 31558360 -150856882 - MIR SINE MIR -158 104 47 315 146 21 188 chr6 31558361 31558505 -150856737 + L1MA10 LINE L1 6215 6334 0 606 327 125 56 chr6 31560019 31560282 -150854960 - L2 LINE L2 -9 3263 3020 1759 170 11 0 chr6 31560282 31560559 -150854683 - AluJo SINE Alu -21 291 12 606 327 125 56 chr6 31560559 31561726 -150853516 - L2 LINE L2 -252 3020 1698 1399 154 75 72 chr6 31561900 31562206 -150853036 - AluJo SINE Alu -5 307 1 186 305 92 38 chr6 31562530 31562661 -150852581 - L2 LINE L2 -341 2973 2836 2340 99 7 0 chr6 31562832 31563136 -150852106 - AluSg SINE Alu -4 306 1 25 0 0 0 chr6 31563136 31563161 -150852081 + AT_rich Low_complexity Low_complexity 1 25 0 198 347 28 0 chr6 31563479 31563551 -150851691 + L2 LINE L2 2275 2348 -966 1830 182 7 19 chr6 31563555 31563862 -150851380 + AluJo SINE Alu 1 303 -9 210 318 57 66 chr6 31563904 31564044 -150851198 + L2 LINE L2 2341 2481 -833 2427 100 0 3 chr6 31564044 31564355 -150850887 - AluSx SINE Alu -2 310 1 210 318 57 66 chr6 31564355 31564538 -150850704 + L2 LINE L2 2481 2724 -590 602 310 175 28 chr6 31564577 31564999 -150850243 + L2 LINE L2 2830 3313 0 614 151 126 8 chr6 31565343 31565462 -150849780 + FLAM_C SINE Alu 1 133 0 219 69 0 0 chr6 31565651 31565680 -150849562 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2358 103 0 0 chr6 31566486 31566788 -150848454 + AluSg SINE Alu 1 302 -8 343 203 40 0 chr6 31567089 31567163 -150848079 + Tigger5 DNA MER2_type 1 77 -2246 336 203 0 0 chr6 31567163 31567222 -150848020 - Tigger5 DNA MER2_type -2 2321 2263 2530 83 0 0 chr6 31567222 31567522 -150847720 - AluSc SINE Alu -9 300 1 231 228 18 0 chr6 31567540 31567597 -150847645 + Tigger5 DNA MER2_type 2266 2323 0 2772 23 3 7 chr6 31567831 31568140 -150847102 + AluY SINE Alu 1 308 -3 1923 165 0 7 chr6 31568433 31568736 -150846506 - AluJb SINE Alu -6 306 6 808 232 79 21 chr6 31568737 31568927 -150846315 - MER58C DNA MER1_type -5 210 10 472 337 55 6 chr6 31568944 31569125 -150846117 + MIR3 SINE MIR 19 208 0 2352 109 0 0 chr6 31569164 31569466 -150845776 - AluY SINE Alu -7 304 3 2583 69 0 0 chr6 31569816 31570121 -150845121 - AluY SINE Alu -6 305 1 216 200 0 0 chr6 31570164 31570209 -150845033 + GA-rich Low_complexity Low_complexity 3 47 0 2044 151 3 0 chr6 31570460 31570758 -150844484 - AluJb SINE Alu -13 299 1 844 153 0 8 chr6 31572531 31572655 -150842587 + FLAM_C SINE Alu 1 123 -20 1224 191 5 0 chr6 31572673 31572877 -150842365 + AluJb SINE Alu 85 289 -23 1878 110 92 0 chr6 31574758 31575031 -150840211 + AluSx SINE Alu 1 298 -14 592 151 0 21 chr6 31575034 31575127 -150840115 + AluJ/FLAM SINE Alu 2 92 -220 2073 109 39 3 chr6 31575127 31575411 -150839831 + AluSp SINE Alu 1 294 -19 1507 139 9 22 chr6 31575412 31575642 -150839600 + AluSg/x SINE Alu 80 306 -4 2332 89 10 0 chr6 31575657 31575959 -150839283 - AluSg SINE Alu -5 305 1 279 221 188 19 chr6 31575959 31576113 -150839129 - L1ME4a LINE L1 -108 6013 5834 2291 90 7 0 chr6 31576128 31576416 -150838826 - AluY SINE Alu -20 291 2 255 242 33 0 chr6 31576438 31576529 -150838713 - L1ME4a LINE L1 -525 5596 5503 1835 150 24 24 chr6 31576771 31577064 -150838178 - AluSx SINE Alu -19 293 1 2067 47 0 0 chr6 31577142 31577378 -150837864 + AluY SINE Alu 63 298 -13 2196 148 7 0 chr6 31579302 31579612 -150835630 - AluSx SINE Alu 0 312 1 1566 163 63 53 chr6 31579612 31579911 -150835331 - AluJo SINE Alu -9 303 1 2161 103 21 7 chr6 31580784 31581075 -150834167 + AluSg SINE Alu 1 295 -15 548 191 63 24 chr6 31581132 31581258 -150833984 + MIR SINE MIR 85 215 -47 208 51 26 26 chr6 31581273 31581312 -150833930 + (TA)n Simple_repeat Simple_repeat 1 39 0 2245 116 3 0 chr6 31581312 31581608 -150833634 - AluSx SINE Alu -12 300 1 876 165 0 0 chr6 31581824 31581957 -150833285 - FLAM_C SINE Alu 0 133 1 1531 173 4 8 chr6 31582225 31582480 -150832762 - AluJo SINE Alu -16 296 43 271 274 21 21 chr6 31582491 31582586 -150832656 - L2 LINE L2 -285 2987 2893 226 297 65 65 chr6 31582668 31582806 -150832436 - L2 LINE L2 -547 2767 2630 2312 105 0 0 chr6 31582967 31583263 -150831979 + AluSp SINE Alu 1 296 -17 2125 89 43 0 chr6 31583680 31583962 -150831280 + AluSq SINE Alu 1 294 -19 2361 84 16 13 chr6 31583966 31584276 -150830966 - AluSq SINE Alu -2 311 1 2237 101 0 10 chr6 31584312 31584476 -150830766 - AluSc SINE Alu -14 295 134 2437 74 0 0 chr6 31584476 31584772 -150830470 - AluY SINE Alu -14 297 2 2237 101 0 10 chr6 31584772 31584905 -150830337 - AluSc SINE Alu -175 134 1 476 144 50 178 chr6 31585330 31585431 -150829811 + MER5A DNA MER1_type 31 143 -46 2285 123 0 19 chr6 31585431 31585749 -150829493 - AluSx SINE Alu 0 312 1 476 144 50 178 chr6 31585749 31585761 -150829481 + MER5A DNA MER1_type 143 155 -34 2504 84 6 0 chr6 31585761 31586072 -150829170 - AluSp SINE Alu 0 313 1 476 144 50 178 chr6 31586072 31586137 -150829105 + MER5A DNA MER1_type 155 187 -2 2101 96 53 0 chr6 31586222 31586503 -150828739 - AluSq SINE Alu -17 296 1 904 201 12 117 chr6 31586573 31586822 -150828420 - AluJo SINE Alu -89 223 1 1889 132 46 0 chr6 31586857 31587137 -150828105 - AluSx SINE Alu -19 293 1 1884 154 17 3 chr6 31587137 31587428 -150827814 - AluJo SINE Alu -7 305 10 196 233 82 55 chr6 31587439 31587512 -150827730 - MIR SINE MIR -160 102 28 2143 108 0 7 chr6 31587853 31588141 -150827101 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr6 31590246 31590266 -150824976 + (GGA)n Simple_repeat Simple_repeat 1 20 0 2609 63 0 0 chr6 31593338 31593638 -150821604 + AluY SINE Alu 1 300 -11 874 93 0 0 chr6 31594901 31595019 -150820223 + L1PB1 LINE L1 6017 6134 -17 2042 156 0 10 chr6 31595743 31596051 -150819191 - AluJb SINE Alu -7 305 1 2351 100 0 0 chr6 31596061 31596361 -150818881 - AluY SINE Alu -11 300 1 1800 154 25 44 chr6 31598787 31599105 -150816137 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 31601819 31601840 -150813402 + AT_rich Low_complexity Low_complexity 1 21 0 218 171 0 0 chr6 31602452 31602487 -150812755 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr6 31602989 31603010 -150812232 + AT_rich Low_complexity Low_complexity 1 21 0 336 91 45 76 chr6 31606012 31606078 -150809164 - U6 snRNA snRNA -43 64 1 2412 94 0 0 chr6 31606677 31606975 -150808267 - AluSc SINE Alu -11 298 1 2624 68 0 0 chr6 31607795 31608105 -150807137 + AluY SINE Alu 1 310 -1 2308 106 0 0 chr6 31608335 31608627 -150806615 - AluSg SINE Alu -18 292 1 2304 99 13 0 chr6 31608879 31609181 -150806061 + AluSq SINE Alu 1 306 -7 212 358 50 17 chr6 31609228 31609348 -150805894 + L3 LINE CR1 1432 1555 -22 2238 113 0 10 chr6 31609421 31609721 -150805521 + AluSx SINE Alu 1 297 -15 2308 104 0 7 chr6 31610042 31610349 -150804893 + AluSg1 SINE Alu 3 307 -2 1656 133 118 11 chr6 31610845 31611124 -150804118 + AluSg1 SINE Alu 1 309 0 767 228 0 0 chr6 31611349 31611498 -150803744 + MER58B DNA MER1_type 193 341 0 2118 114 52 0 chr6 31611529 31611818 -150803424 - AluSp SINE Alu -8 305 2 1979 125 0 28 chr6 31611866 31612154 -150803088 - AluSx SINE Alu -32 280 1 586 305 0 61 chr6 31612971 31613168 -150802074 - MER91A DNA MER1_type -11 185 1 2009 137 17 3 chr6 31613577 31613870 -150801372 + AluJb SINE Alu 1 297 -15 2203 131 0 0 chr6 31616364 31616661 -150798581 - AluSg SINE Alu -13 297 1 1920 153 10 0 chr6 31616661 31616955 -150798287 - AluJo SINE Alu -12 300 3 2100 143 0 3 chr6 31616997 31617298 -150797944 - AluSx SINE Alu -6 306 7 2482 59 7 0 chr6 31617315 31617603 -150797639 - AluY SINE Alu -21 290 1 2101 196 138 103 chr6 31617805 31617879 -150797363 - L2 LINE L2 -3 3310 3240 1532 131 0 18 chr6 31617879 31618108 -150797134 + AluJb SINE Alu 86 310 -2 2285 112 0 3 chr6 31618118 31618414 -150796828 + AluSx SINE Alu 6 300 -12 2152 138 0 3 chr6 31618415 31618727 -150796515 + AluSx SINE Alu 1 311 -1 2101 196 138 103 chr6 31618727 31618962 -150796280 - L2 LINE L2 -81 3232 3007 2369 48 41 14 chr6 31618962 31619253 -150795989 + AluY SINE Alu 1 299 -12 2134 139 7 0 chr6 31619257 31619559 -150795683 + AluJb SINE Alu 1 304 -8 2101 196 138 103 chr6 31619559 31619787 -150795455 - L2 LINE L2 -308 3005 2786 1496 118 164 11 chr6 31619787 31620049 -150795193 + AluSx SINE Alu 1 302 0 2187 120 10 0 chr6 31620054 31620346 -150794896 + AluSg SINE Alu 2 296 -14 2101 196 138 103 chr6 31620346 31620416 -150794826 - L2 LINE L2 -530 2783 2717 2048 116 20 30 chr6 31620416 31620717 -150794525 + AluSx SINE Alu 1 298 -14 2101 196 138 103 chr6 31620717 31621176 -150794066 - L2 LINE L2 -596 2717 2156 313 347 0 0 chr6 31621505 31621626 -150793616 + GA-rich Low_complexity Low_complexity 2 122 0 2255 102 0 3 chr6 31622016 31622310 -150792932 - AluSc SINE Alu -16 293 1 209 80 0 160 chr6 31622416 31622466 -150792776 + (A)n Simple_repeat Simple_repeat 1 42 0 2483 76 0 0 chr6 31622468 31622770 -150792472 + AluY SINE Alu 3 304 -7 1621 253 98 12 chr6 31622998 31623076 -150792166 - L2 LINE L2 -1193 2121 2051 2273 98 34 0 chr6 31623076 31623373 -150791869 + AluSx SINE Alu 1 307 -5 1621 253 98 12 chr6 31623373 31623868 -150791374 - L2 LINE L2 -1263 2051 1499 246 319 101 32 chr6 31623916 31624062 -150791180 - L2 LINE L2 -201 3071 2908 2512 77 0 6 chr6 31624062 31624375 -150790867 + AluY SINE Alu 1 311 0 246 319 101 32 chr6 31624375 31624416 -150790826 - L2 LINE L2 -364 2908 2871 2077 130 37 0 chr6 31624561 31624860 -150790382 - AluSx SINE Alu -2 310 1 389 280 223 0 chr6 31624930 31625105 -150790137 - MIR SINE MIR 0 262 49 852 114 0 0 chr6 31625127 31625241 -150790001 - AluJb SINE Alu -9 303 190 1565 123 0 0 chr6 31625243 31625455 -150789787 + AluSg/x SINE Alu 84 295 -17 2315 91 0 0 chr6 31625455 31625740 -150789502 + AluSc SINE Alu 1 285 -24 1559 92 0 0 chr6 31625741 31625936 -150789306 - AluY SINE Alu -116 195 1 582 87 11 43 chr6 31625936 31626028 -150789214 - AluJo SINE Alu -166 146 58 1946 115 86 0 chr6 31626060 31626329 -150788913 - AluSx SINE Alu -20 292 1 621 85 11 0 chr6 31626335 31626429 -150788813 - AluY SINE Alu -14 297 203 202 299 38 18 chr6 31626456 31626570 -150788672 + MIR SINE MIR 15 131 -77 2158 128 7 3 chr6 31626733 31627037 -150788205 - AluSx SINE Alu -5 307 3 771 200 70 0 chr6 31627039 31627224 -150788018 - L1M4 LINE L1 -748 5398 5201 2648 61 0 3 chr6 31627224 31627536 -150787706 - AluY SINE Alu 0 311 1 1589 113 18 51 chr6 31627536 31627611 -150787631 + Tigger3(Golem) DNA MER2_type 2765 2841 -188 1886 145 10 30 chr6 31627611 31627915 -150787327 + AluJb SINE Alu 1 298 -14 1589 113 18 51 chr6 31627915 31628113 -150787129 + Tigger3(Golem) DNA MER2_type 2841 3029 0 330 67 0 0 chr6 31628864 31628909 -150786333 + (CA)n Simple_repeat Simple_repeat 1 45 0 2488 98 0 0 chr6 31630126 31630433 -150784809 + AluSx SINE Alu 1 307 -5 203 333 0 13 chr6 31631195 31631273 -150783969 + CT-rich Low_complexity Low_complexity 3 79 0 2372 95 0 0 chr6 31632985 31633279 -150781963 - AluSc SINE Alu -15 294 1 198 0 0 0 chr6 31634495 31634517 -150780725 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 2377 77 0 10 chr6 31636165 31636465 -150778777 - AluSg SINE Alu -13 297 1 2395 73 7 3 chr6 31636490 31636793 -150778449 + AluSx SINE Alu 1 304 -8 2455 87 0 0 chr6 31636848 31637148 -150778094 + AluSc SINE Alu 1 300 -9 2118 110 27 10 chr6 31637875 31638176 -150777066 + AluSx SINE Alu 1 306 -6 2319 82 4 0 chr6 31638270 31638551 -150776691 + AluSg SINE Alu 1 282 -28 1222 76 0 19 chr6 31638551 31638709 -150776533 + AluSg/x SINE Alu 156 310 -2 2110 106 7 0 chr6 31639275 31639549 -150775693 - AluSx SINE Alu -14 298 23 226 171 73 0 chr6 31639692 31639733 -150775509 + L2 LINE L2 3261 3304 -9 1771 162 30 0 chr6 31639735 31640006 -150775236 + AluSx SINE Alu 1 279 -33 342 0 0 0 chr6 31640006 31640044 -150775198 + (CA)n Simple_repeat Simple_repeat 1 38 0 430 306 106 0 chr6 31640173 31640333 -150774909 - MER5B DNA MER1_type 0 178 2 1076 198 136 29 chr6 31641188 31641461 -150773781 - AluJo SINE Alu 0 302 1 2085 90 24 7 chr6 31641630 31641920 -150773322 + AluSq SINE Alu 2 296 -17 223 210 270 70 chr6 31641922 31642022 -150773220 + L2 LINE L2 3191 3310 -3 2059 105 59 3 chr6 31642077 31642363 -150772879 + AluSg SINE Alu 1 302 -8 1041 249 118 32 chr6 31645205 31645856 -150769386 + L2 LINE L2 2612 3308 -5 2006 118 29 46 chr6 31645915 31646051 -150769191 + AluSx SINE Alu 2 139 -173 2296 100 3 3 chr6 31646051 31646352 -150768890 + AluSx SINE Alu 1 301 -11 2006 118 29 46 chr6 31646352 31646521 -150768721 + AluSx SINE Alu 139 302 -10 2125 133 0 0 chr6 31646683 31646977 -150768265 - AluSx SINE Alu -18 294 1 2307 98 0 20 chr6 31648386 31648691 -150766551 + AluSg SINE Alu 1 299 -11 1463 77 22 0 chr6 31648700 31648882 -150766360 - AluYa5 SINE Alu -20 291 106 2417 52 0 21 chr6 31648882 31649173 -150766069 - AluY SINE Alu -26 285 1 632 271 43 132 chr6 31649730 31650221 -150765021 - L3 LINE CR1 -3 1574 1128 1489 149 47 68 chr6 31651097 31651230 -150764012 + AluJo SINE Alu 1 135 -177 2280 110 7 3 chr6 31651230 31651530 -150763712 + AluSx SINE Alu 1 301 -11 2388 102 0 0 chr6 31651535 31651830 -150763412 + AluSc SINE Alu 1 295 -14 1489 149 47 68 chr6 31651830 31651986 -150763256 + AluJo SINE Alu 139 290 -22 2275 112 23 0 chr6 31651992 31652296 -150762946 + AluSx SINE Alu 1 311 -1 619 325 41 0 chr6 31653765 31654033 -150761209 + Tigger8 DNA MER2_type 178 456 -210 231 365 52 9 chr6 31654097 31654212 -150761030 + Tigger8 DNA MER2_type 547 666 0 2302 107 0 0 chr6 31654320 31654609 -150760633 + AluSq SINE Alu 5 293 -20 252 223 98 0 chr6 31654783 31654895 -150760347 + L1MC4 LINE L1 6976 7098 -944 * 494 287 75 91 chr6 31654891 31655091 -150760151 + L1MC4 LINE L1 6960 7162 -880 2477 70 7 0 chr6 31655091 31655389 -150759853 + AluY SINE Alu 1 300 -11 494 287 75 91 chr6 31655389 31656157 -150759085 + L1MC4 LINE L1 7162 8031 -11 2182 131 0 0 chr6 31656158 31656448 -150758794 + AluSx SINE Alu 1 290 -22 2293 100 3 7 chr6 31656611 31656910 -150758332 + AluSp SINE Alu 1 298 -15 2150 118 6 25 chr6 31656931 31657246 -150757996 + AluSc SINE Alu 1 309 0 1679 110 121 4 chr6 31657265 31657529 -150757713 + AluSg SINE Alu 1 295 -5 1999 87 4 0 chr6 31659182 31659424 -150755818 - AluSg SINE Alu -65 245 3 1410 155 5 5 chr6 31659551 31659764 -150755478 - AluJb SINE Alu -99 213 1 1641 161 9 47 chr6 31659810 31660132 -150755110 + AluJb SINE Alu 1 310 -2 185 161 179 36 chr6 31660159 31660215 -150755027 + MER5A DNA MER1_type 126 189 0 315 229 66 102 chr6 31660961 31661127 -150754115 - L2 LINE L2 -3 3310 3151 2294 105 0 0 chr6 31661217 31661513 -150753729 + AluSx SINE Alu 1 296 -16 1633 138 51 55 chr6 31661720 31661909 -150753333 + AluJb SINE Alu 1 190 -122 2347 95 0 29 chr6 31661909 31662215 -150753027 - AluSg SINE Alu -13 297 1 1633 138 51 55 chr6 31662215 31662336 -150752906 + AluJb SINE Alu 190 310 -2 2114 120 3 29 chr6 31662481 31662790 -150752452 - AluSx SINE Alu -11 301 1 2543 71 0 0 chr6 31663305 31663601 -150751641 - AluY SINE Alu -15 296 1 294 245 179 0 chr6 31663877 31663983 -150751259 - L2 LINE L2 -2 3311 3187 1885 148 0 0 chr6 31665365 31665656 -150749586 + AluSx SINE Alu 20 310 0 381 288 57 57 chr6 31665657 31665690 -150749552 - MIR SINE MIR -71 191 159 2248 126 0 0 chr6 31665690 31665992 -150749250 - AluSx SINE Alu -10 302 1 1636 153 3 63 chr6 31665994 31666158 -150749084 - AluJo SINE Alu -18 294 155 2594 50 0 10 chr6 31666158 31666458 -150748784 - AluY SINE Alu -14 297 1 1636 153 3 63 chr6 31666458 31666594 -150748648 - AluJo SINE Alu -157 155 12 381 288 57 57 chr6 31666594 31666734 -150748508 - MIR SINE MIR -103 159 15 266 303 0 11 chr6 31666787 31666876 -150748366 + MIR3 SINE MIR 103 190 -18 852 131 15 0 chr6 31668328 31668458 -150746784 + FLAM_C SINE Alu 2 133 0 317 223 193 62 chr6 31668514 31668584 -150746658 + L2 LINE L2 2719 2778 -535 2361 80 3 10 chr6 31668584 31668884 -150746358 + AluSc SINE Alu 1 298 -11 317 223 193 62 chr6 31668884 31669245 -150745997 + L2 LINE L2 2778 3187 -126 2343 98 13 0 chr6 31669261 31669568 -150745674 + AluSx SINE Alu 1 311 -1 225 237 0 0 chr6 31672467 31672526 -150742716 + G-rich Low_complexity Low_complexity 2 60 0 201 121 0 0 chr6 31673490 31673523 -150741719 + (CTG)n Simple_repeat Simple_repeat 3 35 0 244 220 9 28 chr6 31674941 31675050 -150740192 + GA-rich Low_complexity Low_complexity 3 109 0 21 0 0 0 chr6 31675060 31675081 -150740161 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 31678808 31678835 -150736407 + GC_rich Low_complexity Low_complexity 1 27 0 277 206 41 14 chr6 31679355 31679428 -150735814 - MIR3 SINE MIR -28 180 106 2344 43 40 7 chr6 31679688 31679988 -150735254 + AluY SINE Alu 2 311 0 475 298 39 17 chr6 31680021 31680202 -150735040 + LTR33 LTR ERVL 329 513 -8 227 151 0 10 chr6 31680265 31680512 -150734730 + AluSx SINE Alu 1 300 -1 2158 98 3 0 chr6 31680660 31680955 -150734287 + AluSx SINE Alu 1 296 -16 2265 93 0 0 chr6 31680957 31681259 -150733983 + AluSg SINE Alu 1 302 -8 2332 87 6 0 chr6 31681261 31681572 -150733670 + AluSp SINE Alu 1 313 0 1447 155 65 0 chr6 31681863 31682108 -150733134 - AluJo SINE Alu -18 294 34 2192 87 0 14 chr6 31682129 31682446 -150732796 - AluSq SINE Alu 0 313 1 2286 162 15 96 chr6 31682451 31682542 -150732700 - L1MB5 LINE L1 -37 6137 6040 2020 113 10 0 chr6 31682542 31682833 -150732409 - AluSq SINE Alu -19 294 1 2286 162 15 96 chr6 31682833 31683250 -150731992 - L1MB5 LINE L1 -134 6040 5591 1726 157 54 27 chr6 31683250 31683404 -150731838 - AluJb SINE Alu 0 302 154 1989 114 3 29 chr6 31683404 31683569 -150731673 - AluSx SINE Alu -14 298 130 2094 104 0 0 chr6 31683569 31683875 -150731367 - AluSc SINE Alu 0 309 3 1920 92 57 7 chr6 31683879 31684162 -150731080 - AluSp SINE Alu -16 297 1 1989 114 3 29 chr6 31684162 31684297 -150730945 - AluSx SINE Alu -185 127 1 1726 157 54 27 chr6 31684297 31684436 -150730806 - AluJb SINE Alu -148 154 1 2286 162 15 96 chr6 31684436 31684519 -150730723 - L1MB5 LINE L1 -582 5592 5593 2038 121 0 16 chr6 31685309 31685622 -150729620 - AluSx SINE Alu -4 308 1 2274 89 0 3 chr6 31685678 31685981 -150729261 - AluSc SINE Alu -7 302 1 2167 110 0 0 chr6 31685981 31686273 -150728969 - AluSx SINE Alu -20 292 1 1615 162 21 0 chr6 31686273 31686557 -150728685 - AluJb SINE Alu -18 294 5 712 157 14 0 chr6 31686562 31686690 -150728552 - L1MB5 LINE L1 -573 5607 5467 1752 158 10 0 chr6 31686696 31686987 -150728255 + AluJb SINE Alu 1 294 -18 1466 118 0 0 chr6 31686987 31687190 -150728052 + AluSx SINE Alu 1 203 -109 1174 124 4 161 chr6 31687190 31687463 -150727779 + AluSg/x SINE Alu 67 296 -14 198 247 91 39 chr6 31687620 31687697 -150727545 - MIR3 SINE MIR -41 167 87 188 35 35 0 chr6 31688048 31688077 -150727165 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2064 59 37 75 chr6 31688570 31688892 -150726350 + AluY SINE Alu 1 310 -1 2230 83 7 0 chr6 31688909 31689198 -150726044 + AluSc SINE Alu 1 291 -18 706 295 63 35 chr6 31689198 31689690 -150725552 + L1MC5 LINE L1 7289 7794 -167 2331 62 19 10 chr6 31689758 31690066 -150725176 + AluY SINE Alu 1 311 0 2172 84 7 19 chr6 31693975 31694108 -150721134 + AluSg SINE Alu 3 136 -174 2445 52 3 3 chr6 31694108 31694414 -150720828 + AluY SINE Alu 1 306 -5 2172 84 7 19 chr6 31694414 31694588 -150720654 + AluSg SINE Alu 136 306 -4 1030 137 30 12 chr6 31694588 31694756 -150720486 + AluSg/x SINE Alu 134 304 -8 323 164 0 15 chr6 31696128 31696195 -150719047 + GA-rich Low_complexity Low_complexity 5 70 0 1656 166 19 35 chr6 31696342 31696656 -150718586 + AluJb SINE Alu 4 312 0 265 139 93 0 chr6 31696700 31696775 -150718467 + Alu SINE Alu 235 313 0 1394 153 84 8 chr6 31696823 31697084 -150718158 - AluJo SINE Alu -31 281 1 398 56 0 0 chr6 31697085 31697139 -150718103 - L1MA7 LINE L1 -461 5830 5777 3183 132 27 0 chr6 31697144 31697661 -150717581 - L1MA4 LINE L1 -1 6299 5769 916 202 17 0 chr6 31697661 31697828 -150717414 - AluSg/x SINE Alu -24 288 119 2114 129 0 0 chr6 31697853 31698156 -150717086 - AluSx SINE Alu -9 303 1 2176 118 3 0 chr6 31698160 31698464 -150716778 - AluSp SINE Alu -8 305 1 540 92 25 0 chr6 31698469 31698568 -150716674 - L1P5 LINE L1 -375 5781 5675 644 237 8 0 chr6 31698614 31698745 -150716497 - AluJo SINE Alu -103 209 78 315 250 16 0 chr6 31698745 31698809 -150716433 + MER2 DNA MER2_type 281 345 0 1639 140 23 8 chr6 31698860 31699124 -150716118 + AluSx SINE Alu 1 268 -44 228 352 56 24 chr6 31701174 31701299 -150713943 + L2 LINE L2 3144 3272 0 801 142 8 0 chr6 31702133 31702260 -150712982 - L1MB3 LINE L1 -1 6182 6055 1734 179 3 16 chr6 31702271 31702583 -150712659 - AluJo SINE Alu -4 308 1 1914 136 0 7 chr6 31703108 31703402 -150711840 - AluSx SINE Alu -16 296 5 551 233 31 25 chr6 31703489 31703648 -150711594 - MIR SINE MIR 0 262 103 232 295 133 57 chr6 31703705 31703987 -150711255 + L2 LINE L2 2707 3030 -242 2087 89 41 0 chr6 31703987 31704279 -150710963 - AluSx SINE Alu -8 304 1 197 337 67 11 chr6 31704492 31704581 -150710661 - L2 LINE L2 -17 3296 3203 2324 81 0 31 chr6 31705756 31706079 -150709163 - AluSp SINE Alu 0 313 1 2294 68 3 0 chr6 31706086 31706379 -150708863 - AluSp SINE Alu -19 294 1 242 314 23 12 chr6 31706491 31706577 -150708665 - MIR SINE MIR -66 142 56 1013 62 8 0 chr6 31706731 31706861 -150708381 + AluY SINE Alu 2 132 -179 187 323 115 15 chr6 31706949 31707079 -150708163 + L2 LINE L2 3171 3313 0 33 43 0 0 chr6 31709176 31709223 -150706019 + GC_rich Low_complexity Low_complexity 1 47 0 1235 145 7 86 chr6 31709653 31709922 -150705320 + AluJo SINE Alu 40 287 -25 2330 78 3 0 chr6 31709930 31710238 -150705004 + AluSc SINE Alu 1 309 0 373 198 0 55 chr6 31712256 31712347 -150702895 + L2 LINE L2 3225 3310 -3 912 142 231 4 chr6 31713304 31713529 -150701713 - MER2 DNA MER2_type -36 309 34 407 232 49 0 chr6 31713620 31713702 -150701540 - FRAM SINE Alu -79 97 12 275 239 57 34 chr6 31713817 31713905 -150701337 + MER5A DNA MER1_type 18 107 -82 1244 143 39 149 chr6 31714023 31714319 -150700923 + AluJb SINE Alu 3 259 -43 1993 121 13 10 chr6 31714319 31714624 -150700618 - AluSx SINE Alu -6 306 1 1244 143 39 149 chr6 31714624 31714663 -150700579 + AluJb SINE Alu 259 301 -1 891 209 0 0 chr6 31714995 31715153 -150700089 - FRAM SINE Alu -16 160 3 2024 128 7 13 chr6 31715166 31715470 -150699772 - AluSx SINE Alu -10 302 1 2148 125 3 0 chr6 31716231 31716535 -150698707 - AluSx SINE Alu -7 305 1 2238 88 10 0 chr6 31716545 31716842 -150698400 - AluY SINE Alu -9 302 3 2155 110 0 13 chr6 31716844 31717145 -150698097 - AluSx SINE Alu -15 297 1 715 252 67 21 chr6 31717155 31717393 -150697849 - MIR SINE MIR -10 252 4 236 341 171 5 chr6 31717479 31717696 -150697546 + MIR SINE MIR 7 259 -3 2205 99 3 3 chr6 31718969 31719273 -150695969 + AluSx SINE Alu 1 304 -8 2145 124 13 10 chr6 31719737 31720035 -150695207 - AluSx SINE Alu -13 299 1 1827 161 24 3 chr6 31720126 31720418 -150694824 - AluJb SINE Alu -14 298 1 1027 279 73 31 chr6 31720648 31720799 -150694443 - HAL1 LINE L1 -716 1791 1648 2177 142 0 0 chr6 31720799 31721102 -150694140 - AluSq SINE Alu -10 303 1 1027 279 73 31 chr6 31721102 31721225 -150694017 - HAL1 LINE L1 -859 1648 1532 2287 121 3 0 chr6 31721225 31721531 -150693711 + AluSq SINE Alu 1 307 -6 1910 171 23 3 chr6 31721535 31721839 -150693403 + AluJb SINE Alu 1 310 -2 1027 279 73 31 chr6 31721839 31722009 -150693233 - HAL1 LINE L1 -977 1530 1322 2296 98 3 0 chr6 31722076 31722373 -150692869 - AluY SINE Alu -13 298 1 1477 99 42 0 chr6 31722514 31722706 -150692536 - AluSg/x SINE Alu -40 272 73 1012 286 165 43 chr6 31722712 31722939 -150692303 - HAL1 LINE L1 -1669 838 640 180 0 0 0 chr6 31722939 31722959 -150692283 + (TTGGGG)n Simple_repeat Simple_repeat 3 22 0 1012 286 165 43 chr6 31722959 31723099 -150692143 - HAL1 LINE L1 -1867 640 518 1819 137 3 81 chr6 31723099 31723434 -150691808 + AluSx SINE Alu 4 312 0 1012 286 165 43 chr6 31723434 31723715 -150691527 - HAL1 LINE L1 -1989 518 110 1942 182 0 3 chr6 31723735 31724048 -150691194 + AluJb SINE Alu 1 312 0 768 73 18 0 chr6 31724071 31724181 -150691061 - HY1 scRNA scRNA 0 112 1 518 16 0 0 chr6 31724210 31724274 -150690968 + AluY SINE Alu 232 295 -16 297 250 0 0 chr6 31724284 31724344 -150690898 - HAL1 LINE L1 -2438 69 10 2592 64 0 0 chr6 31724362 31724659 -150690583 - AluY SINE Alu -14 297 1 362 290 184 37 chr6 31724662 31724934 -150690308 + L2 LINE L2 2652 2963 -351 201 39 0 0 chr6 31724948 31724974 -150690268 + (ACTG)n Simple_repeat Simple_repeat 1 26 0 495 87 0 0 chr6 31724975 31725044 -150690198 + (TCCG)n Simple_repeat Simple_repeat 2 70 0 1891 127 33 11 chr6 31725057 31725332 -150689910 - AluSx SINE Alu -31 281 1 712 330 47 20 chr6 31725365 31725707 -150689535 + L2 LINE L2 2959 3309 -4 205 368 21 0 chr6 31725770 31725865 -150689377 - MIR3 SINE MIR -41 167 71 398 228 154 86 chr6 31725891 31726053 -150689189 - MER5A DNA MER1_type -8 181 9 2886 188 64 14 chr6 31726212 31726833 -150688409 + MER82 DNA MER2_type 1 652 -1 607 301 68 0 chr6 31726930 31727093 -150688149 - MER91A DNA MER1_type 0 196 23 2404 112 0 0 chr6 31727137 31727442 -150687800 - AluSg SINE Alu -5 305 1 1792 160 17 0 chr6 31727442 31727736 -150687506 - AluJb SINE Alu -13 299 1 198 0 0 0 chr6 31728609 31728631 -150686611 + (T)n Simple_repeat Simple_repeat 1 22 0 1806 109 0 0 chr6 31728631 31728861 -150686381 - AluSq SINE Alu -83 230 1 599 183 1 7 chr6 31732599 31732613 -150682629 - L1PA16 LINE L1 -134 6022 6009 1918 85 0 12 chr6 31732613 31732861 -150682381 - AluSc SINE Alu -10 299 55 599 183 1 7 chr6 31732861 31732971 -150682271 - L1PA16 LINE L1 -147 6009 5903 445 81 0 0 chr6 31732971 31733033 -150682209 - AluSc SINE Alu -250 63 2 2217 132 3 0 chr6 31733237 31733592 -150681650 + L1PA16 LINE L1 5799 6154 -12 608 160 104 0 chr6 31733640 31733746 -150681496 + FLAM_C SINE Alu 5 121 -22 186 43 0 0 chr6 31733746 31733769 -150681473 + (CAA)n Simple_repeat Simple_repeat 2 24 0 262 68 23 0 chr6 31733769 31733813 -150681429 + L1M1 LINE L1 5788 5832 -468 1682 139 73 7 chr6 31734153 31734316 -150680926 - AluJb SINE Alu -14 298 108 423 0 0 0 chr6 31734316 31734363 -150680879 + (TA)n Simple_repeat Simple_repeat 1 47 0 1682 139 73 7 chr6 31734363 31734473 -150680769 - AluJb SINE Alu -204 108 7 233 196 0 0 chr6 31734666 31734712 -150680530 + CT-rich Low_complexity Low_complexity 2 47 0 2436 112 0 0 chr6 31734768 31735080 -150680162 + AluSx SINE Alu 1 312 0 246 355 86 43 chr6 31735124 31735380 -150679862 - L2 LINE L2 -179 3093 2827 207 321 25 37 chr6 31735829 31735910 -150679332 + L2 LINE L2 3186 3265 -7 444 258 62 67 chr6 31737141 31737350 -150677892 + L2 LINE L2 3098 3305 -8 368 287 156 0 chr6 31737897 31738064 -150677178 + MIR SINE MIR 49 241 -21 1948 136 0 4 chr6 31738330 31738633 -150676609 - AluJo SINE Alu 0 316 15 21 0 0 0 chr6 31738646 31738667 -150676575 + AT_rich Low_complexity Low_complexity 1 21 0 2398 88 0 3 chr6 31738671 31738965 -150676277 + AluSg SINE Alu 1 293 -17 1956 81 58 8 chr6 31738965 31739225 -150676017 - AluSx SINE Alu -37 275 2 206 206 0 0 chr6 31739515 31739549 -150675693 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 369 256 22 0 chr6 31739668 31739758 -150675484 + L2 LINE L2 3182 3273 -40 205 324 15 0 chr6 31739996 31740064 -150675178 + MIR3 SINE MIR 132 200 -8 2435 75 10 0 chr6 31741473 31741767 -150673475 + AluSq SINE Alu 1 297 -16 298 283 6 31 chr6 31741883 31741904 -150673338 - L1MA10 LINE L1 0 6334 6314 2267 216 39 21 chr6 31741904 31742149 -150673093 - L1ME1 LINE L1 -8 6158 5919 2349 96 27 0 chr6 31742149 31742450 -150672792 + AluSq SINE Alu 1 309 -4 2267 216 39 21 chr6 31742450 31742773 -150672469 - L1ME1 LINE L1 -247 5919 5580 229 158 0 0 chr6 31742774 31742812 -150672430 + Alu SINE Alu 2 39 -260 1168 112 7 0 chr6 31742812 31742964 -150672278 - AluSx SINE Alu -159 153 1 1493 173 12 4 chr6 31742967 31743215 -150672027 + AluJb SINE Alu 50 299 -13 2289 90 30 7 chr6 31743216 31743515 -150671727 + AluSg SINE Alu 1 306 -4 2250 75 3 14 chr6 31743921 31744236 -150671006 - AluY SINE Alu 0 313 2 442 314 63 37 chr6 31744238 31744429 -150670813 - MIR SINE MIR -38 224 29 187 268 0 0 chr6 31744449 31744490 -150670752 + MIR SINE MIR 21 61 -201 2282 126 0 0 chr6 31744493 31744803 -150670439 - AluSg SINE Alu 0 310 1 1620 193 0 39 chr6 31744803 31745107 -150670135 - AluJo SINE Alu -17 295 3 256 351 146 0 chr6 31745112 31745277 -150669965 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 31745794 31745819 -150669423 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 920 199 24 15 chr6 31745845 31745876 -150669366 - MER3 DNA MER1_type 0 209 180 2261 115 0 7 chr6 31745876 31746045 -150669197 - AluSx SINE Alu -10 302 134 2407 74 0 7 chr6 31746045 31746362 -150668880 - AluY SINE Alu 0 311 2 2261 115 0 7 chr6 31746362 31746496 -150668746 - AluSx SINE Alu -178 134 1 920 199 24 15 chr6 31746496 31746670 -150668572 - MER3 DNA MER1_type -29 180 2 428 144 0 56 chr6 31747591 31747681 -150667561 - AluJ/FRAM SINE Alu -8 304 220 1444 175 20 4 chr6 31747938 31748184 -150667058 - AluJo SINE Alu -62 250 1 2440 79 7 0 chr6 31748614 31748918 -150666324 - AluSp SINE Alu -7 306 1 305 276 31 24 chr6 31748976 31749103 -150666139 - LTR67 LTR ERVL -17 540 413 273 299 41 10 chr6 31749549 31749646 -150665596 + MIR SINE MIR 156 255 -7 477 251 37 55 chr6 31749671 31749778 -150665464 - MER63A DNA MER1_type -1478 210 103 2568 163 124 67 chr6 31749778 31749878 -150665364 - MER39 LTR ERV1 0 707 614 1736 189 33 0 chr6 31749878 31750179 -150665063 - AluJb SINE Alu -1 311 1 2568 163 124 67 chr6 31750179 31750296 -150664946 - MER39 LTR ERV1 -93 614 505 2367 116 0 0 chr6 31750296 31750599 -150664643 + AluSx SINE Alu 1 303 -9 2568 163 124 67 chr6 31750599 31750631 -150664611 - MER39 LTR ERV1 -202 505 476 2559 77 3 0 chr6 31750631 31750941 -150664301 + AluSp SINE Alu 1 311 -2 2568 163 124 67 chr6 31750941 31751358 -150663884 - MER39 LTR ERV1 -231 476 1 477 251 37 55 chr6 31751358 31751413 -150663829 - MER63A DNA MER1_type -1585 103 51 729 317 147 18 chr6 31751512 31751894 -150663348 - MLT1J LTR MaLR -6 505 75 198 319 66 56 chr6 31752058 31752312 -150662930 - L2 LINE L2 -470 2844 2585 8177 64 5 7 chr6 31752312 31753386 -150661856 - MER11C LTR ERVK 0 1071 1 198 319 66 56 chr6 31753386 31753419 -150661823 - L2 LINE L2 -729 2585 2554 2284 123 0 0 chr6 31753549 31753857 -150661385 - AluSq SINE Alu -5 308 1 1687 166 0 56 chr6 31753859 31754179 -150661063 - AluJo SINE Alu -9 303 2 1100 239 109 32 chr6 31754185 31754587 -150660655 - LTR16A1 LTR ERVL 0 457 25 200 316 19 52 chr6 31754608 31754763 -150660479 - L2 LINE L2 -954 2360 2211 1671 175 4 18 chr6 31754769 31755103 -150660139 - AluJb SINE Alu 0 336 7 961 231 154 21 chr6 31755335 31755647 -150659595 - MLT1G LTR MaLR 0 590 321 1800 149 23 46 chr6 31755647 31755949 -150659293 - AluJb SINE Alu -17 295 1 961 231 154 21 chr6 31755949 31756136 -150659106 - MLT1G LTR MaLR -269 321 1 201 272 39 0 chr6 31756374 31756445 -150658797 - MIR SINE MIR -107 155 82 391 250 47 0 chr6 31757682 31757810 -150657432 - L1ME4a LINE L1 -11 6110 5977 265 330 137 18 chr6 31757942 31758169 -150657073 + L2 LINE L2 3021 3274 -39 339 309 73 0 chr6 31758241 31758364 -150656878 - L2 LINE L2 -4 3268 3137 535 284 60 22 chr6 31758496 31758679 -150656563 - MIR3 SINE MIR -3 205 16 409 312 62 47 chr6 31758681 31759009 -150656233 + L2 LINE L2 2449 2771 -543 1396 168 49 96 chr6 31759009 31759157 -150656085 - MLT1B LTR MaLR 0 390 237 1846 106 94 4 chr6 31759157 31759461 -150655781 - AluSc SINE Alu 0 309 1 2380 99 3 13 chr6 31759463 31759775 -150655467 - AluSx SINE Alu -3 309 1 1396 168 49 96 chr6 31759775 31760029 -150655213 - MLT1B LTR MaLR -154 236 4 409 312 62 47 chr6 31760029 31760101 -150655141 + L2 LINE L2 2771 2855 -459 386 315 50 50 chr6 31760212 31760453 -150654789 + L2 LINE L2 3007 3247 -25 2449 98 0 0 chr6 31761075 31761372 -150653870 + AluSq SINE Alu 1 297 -16 310 164 79 145 chr6 31761372 31761524 -150653718 + L1ME3 LINE L1 5968 6109 -53 23 0 0 0 chr6 31761545 31761568 -150653674 + AT_rich Low_complexity Low_complexity 1 23 0 1952 170 20 0 chr6 31761576 31761882 -150653360 + AluJb SINE Alu 1 312 0 1019 216 22 86 chr6 31761913 31762274 -150652968 + L1ME1 LINE L1 5811 6148 -18 26 0 0 0 chr6 31762274 31762300 -150652942 + AT_rich Low_complexity Low_complexity 1 26 0 546 122 0 0 chr6 31763263 31763345 -150651897 + AluS SINE Alu 5 86 -226 428 138 15 0 chr6 31763346 31763411 -150651831 - AluS SINE Alu -236 66 1 229 135 0 0 chr6 31763411 31763448 -150651794 - L1ME4a LINE L1 -187 5975 5939 2422 60 0 10 chr6 31763668 31763969 -150651273 - AluY SINE Alu -13 298 1 2245 113 3 3 chr6 31763969 31764270 -150650972 - AluSx SINE Alu -11 301 1 358 359 30 0 chr6 31764302 31764433 -150650809 + MIR SINE MIR 20 154 -108 1213 227 65 36 chr6 31764541 31764849 -150650393 + MLT1I LTR MaLR 93 409 0 1863 167 3 7 chr6 31764979 31765272 -150649970 - AluJo SINE Alu -20 292 1 234 325 0 17 chr6 31765340 31765460 -150649782 + A-rich Low_complexity Low_complexity 2 119 0 2131 137 0 0 chr6 31765471 31765814 -150649428 + AluSx SINE Alu 1 343 0 336 290 136 61 chr6 31766030 31766426 -150648816 - L2 LINE L2 -20 3252 2827 518 149 6 119 chr6 31766690 31766747 -150648495 - MER83 LTR ERV1 0 448 386 2404 88 0 16 chr6 31766747 31767052 -150648190 + AluSx SINE Alu 1 300 -12 518 149 6 119 chr6 31767052 31767220 -150648022 - MER83 LTR ERV1 -62 386 114 6704 154 23 16 chr6 31767222 31768342 -150646900 - MER83-int LTR ERV1 -3741 1139 12 1466 180 73 80 chr6 31768342 31768793 -150646449 - MER83 LTR ERV1 0 448 1 335 273 55 99 chr6 31768794 31768892 -150646350 - MIR SINE MIR -19 243 142 2330 103 0 0 chr6 31768892 31769184 -150646058 - AluSc SINE Alu -17 292 1 335 273 55 99 chr6 31769184 31769338 -150645904 - MIR SINE MIR -120 142 2 183 298 153 40 chr6 31769421 31769545 -150645697 - MIR SINE MIR -56 206 69 197 234 16 47 chr6 31770471 31770535 -150644707 - MIR SINE MIR -64 198 137 1212 155 49 42 chr6 31770538 31770775 -150644467 - L1MB3 LINE L1 -7 6176 5935 1676 115 0 0 chr6 31770775 31771001 -150644241 - AluSc SINE Alu 0 309 84 1212 155 49 42 chr6 31771001 31771028 -150644214 - L1MB3 LINE L1 -248 5935 5910 1922 134 51 0 chr6 31771028 31771303 -150643939 + AluSx SINE Alu 1 289 -23 2146 98 39 0 chr6 31771311 31771596 -150643646 + AluSx SINE Alu 1 296 -16 2176 136 42 112 chr6 31771596 31771633 -150643609 - L1MB3 LINE L1 -10 6173 5276 2339 98 0 3 chr6 31771633 31771928 -150643314 - AluSp SINE Alu -16 297 4 469 243 62 82 chr6 31771933 31772048 -150643194 - L1MC4 LINE L1 -2151 5891 5775 1928 160 0 20 chr6 31772048 31772354 -150642888 - AluJb SINE Alu -12 300 1 469 243 62 82 chr6 31772354 31772481 -150642761 - L1MC4 LINE L1 -2267 5775 5654 233 146 0 0 chr6 31772452 31772500 -150642742 - L1MB7 LINE L1 -7 6177 6130 * 537 106 0 75 chr6 31772504 31772598 -150642644 + AluSg/x SINE Alu 210 296 -16 4148 141 70 43 chr6 31772598 31772629 -150642613 - L1MB7 LINE L1 -47 6137 6108 2160 108 10 0 chr6 31772629 31772925 -150642317 - AluSg SINE Alu -10 300 2 4148 141 70 43 chr6 31772925 31773598 -150641644 - L1MB7 LINE L1 -76 6108 5455 2166 94 49 3 chr6 31773598 31773884 -150641358 - AluSx SINE Alu -13 299 1 4148 141 70 43 chr6 31773884 31774105 -150641137 - L1MB7 LINE L1 -729 5455 5242 889 133 0 15 chr6 31774105 31774240 -150641002 - FLAM_C SINE Alu 0 133 1 4148 141 70 43 chr6 31774240 31774515 -150640727 - L1MB7 LINE L1 -942 5242 4912 840 126 0 0 chr6 31774568 31774687 -150640555 + FLAM_C SINE Alu 1 119 -24 195 42 0 0 chr6 31774691 31774715 -150640527 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 308 297 0 50 chr6 31774716 31774817 -150640425 + L2 LINE L2 3176 3271 -1 265 244 47 12 chr6 31774816 31774902 -150640340 - MIR SINE MIR -126 136 48 * 2393 79 17 0 chr6 31774916 31775207 -150640035 - AluSc SINE Alu -13 296 1 2209 85 17 0 chr6 31775310 31775655 -150639587 + AluSq SINE Alu 1 313 0 251 260 328 11 chr6 31776347 31776524 -150638718 - MIR SINE MIR -10 252 20 477 201 85 39 chr6 31776663 31776866 -150638376 - MER63 DNA MER1_type 0 1061 1 2206 108 34 0 chr6 31776868 31777164 -150638078 - AluSx SINE Alu -6 306 1 662 171 70 23 chr6 31777634 31777763 -150637479 - AluJo SINE Alu -93 219 85 1904 164 17 0 chr6 31777896 31778188 -150637054 + AluJb SINE Alu 1 297 -15 479 346 23 68 chr6 31779152 31779283 -150635959 - L2 LINE L2 0 3272 3157 2398 82 0 10 chr6 31779283 31779589 -150635653 - AluSq SINE Alu -10 303 1 479 346 23 68 chr6 31779589 31779723 -150635519 - L2 LINE L2 -115 3157 3019 199 276 103 0 chr6 31779756 31779814 -150635428 + L2 LINE L2 3160 3223 -49 339 314 0 0 chr6 31780035 31780121 -150635121 + MIR SINE MIR 44 129 -133 2483 67 0 0 chr6 31780226 31780525 -150634717 - AluY SINE Alu -12 299 1 2350 88 0 0 chr6 31780832 31781141 -150634101 - AluSg SINE Alu 0 309 1 1941 161 0 13 chr6 31781149 31781448 -150633794 - AluJb SINE Alu -17 295 1 2263 84 61 3 chr6 31781948 31782244 -150632998 - AluSq SINE Alu 0 313 1 1202 202 116 27 chr6 31782790 31783048 -150632194 + AluJb SINE Alu 12 292 -20 183 42 0 0 chr6 31783321 31783345 -150631897 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 199 317 24 12 chr6 31783751 31783833 -150631409 + MIR SINE MIR 170 252 -10 2189 125 0 0 chr6 31784453 31784787 -150630455 - AluSx SINE Alu 0 334 1 1631 163 19 0 chr6 31785029 31785287 -150629955 - AluJo SINE Alu -49 263 1 230 121 0 0 chr6 31785333 31785366 -150629876 + Alu SINE Alu 1 33 -266 707 199 6 68 chr6 31785419 31785580 -150629662 - AluJb SINE Alu -144 168 18 935 246 17 61 chr6 31785599 31786006 -150629236 - L1MC5 LINE L1 -436 7525 7137 1270 230 74 61 chr6 31786057 31786583 -150628659 - L1MC5 LINE L1 -812 7149 6617 24 0 0 0 chr6 31786620 31786644 -150628598 + AT_rich Low_complexity Low_complexity 1 24 0 1700 196 82 54 chr6 31786852 31787281 -150627961 - LTR47B LTR ERVL -2 441 1 380 246 138 7 chr6 31787559 31787697 -150627545 - L1MC5 LINE L1 -1925 5883 5728 189 0 0 0 chr6 31787697 31787718 -150627524 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 675 152 62 18 chr6 31787731 31787843 -150627399 - AluJb SINE Alu -194 118 2 1001 263 53 19 chr6 31787844 31788167 -150627075 - L1MC5 LINE L1 -2072 5736 5403 198 0 0 0 chr6 31788168 31788190 -150627052 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 319 256 126 51 chr6 31788190 31788205 -150627037 - L1MC5 LINE L1 -983 5163 5151 1552 112 0 0 chr6 31788205 31788402 -150626840 - AluSg SINE Alu -113 197 1 319 256 126 51 chr6 31788402 31788601 -150626641 - L1MC5 LINE L1 -995 5151 4933 2226 109 13 0 chr6 31788991 31789294 -150625948 - AluSx SINE Alu -5 307 1 196 294 181 1 chr6 31789534 31789718 -150625524 - MIR SINE MIR -28 234 8 211 305 76 34 chr6 31789861 31789979 -150625263 + L2 LINE L2 3150 3272 0 2153 114 17 3 chr6 31790167 31790466 -150624776 + AluSx SINE Alu 5 307 -5 352 322 0 0 chr6 31790473 31790563 -150624679 - L1MC4 LINE L1 -1339 6703 6614 330 344 0 0 chr6 31790491 31790581 -150624661 + L1MC4 LINE L1 6614 6703 -1339 * 2131 132 0 16 chr6 31790941 31791251 -150623991 + AluSq SINE Alu 1 305 -8 2378 97 0 6 chr6 31791251 31791561 -150623681 + AluSc SINE Alu 1 309 0 2204 108 0 11 chr6 31791578 31791891 -150623351 + AluSx SINE Alu 1 310 0 4211 150 85 80 chr6 31792400 31793326 -150621916 - MER21A LTR ERV1 0 931 1 2076 121 10 3 chr6 31793428 31793717 -150621525 - AluSx SINE Alu -21 291 1 1567 150 72 49 chr6 31793849 31793982 -150621260 - MER39 LTR ERV1 -16 691 563 2254 131 0 6 chr6 31793982 31794296 -150620946 + AluSx SINE Alu 1 312 0 1567 150 72 49 chr6 31794296 31794508 -150620734 - MER39 LTR ERV1 -144 563 338 1382 153 5 5 chr6 31794508 31794731 -150620511 - pTR5 LTR ERV1 -2046 392 170 285 303 0 0 chr6 31794732 31794831 -150620411 - LTR30 LTR ERV1 -80 642 544 4004 158 46 49 chr6 31794832 31795796 -150619446 - pTR5 LTR ERV1 -414 2024 743 1601 149 76 6 chr6 31795796 31796112 -150619130 - MER39 LTR ERV1 -366 341 4 2022 118 13 23 chr6 31796150 31796455 -150618787 - AluSx SINE Alu -10 302 1 1920 167 0 16 chr6 31796721 31797027 -150618215 + AluJo SINE Alu 3 303 -9 242 95 24 0 chr6 31797038 31797080 -150618162 + Charlie8 DNA MER1_type 98 140 -2277 968 208 56 5 chr6 31797089 31797286 -150617956 + AluJo SINE Alu 86 292 -20 2374 94 0 7 chr6 31797746 31798044 -150617198 + AluSx SINE Alu 1 296 -16 2188 180 59 21 chr6 31798494 31799016 -150616226 + MER74A LTR ERVL 4 545 -13 1862 155 3 33 chr6 31799098 31799424 -150615818 + AluSx SINE Alu 1 312 0 1648 177 0 32 chr6 31799438 31799715 -150615527 + AluJo SINE Alu 6 273 -39 560 229 84 12 chr6 31799752 31799918 -150615324 + L2 LINE L2 3100 3277 -36 254 289 20 86 chr6 31799951 31800148 -150615094 - MLT1J LTR MaLR -215 296 113 2390 78 14 0 chr6 31800305 31800599 -150614643 - AluY SINE Alu -13 298 1 2255 117 0 7 chr6 31800640 31800948 -150614294 - AluSx SINE Alu -4 308 3 227 31 31 0 chr6 31801193 31801225 -150614017 + (TG)n Simple_repeat Simple_repeat 1 33 0 1072 187 10 30 chr6 31801403 31801601 -150613641 - AluJo SINE Alu -118 194 1 1607 131 64 17 chr6 31801601 31801898 -150613344 - MER39 LTR ERV1 -396 311 1 539 255 98 21 chr6 31802381 31802616 -150612626 + MLT1J LTR MaLR 230 482 -29 1899 122 10 56 chr6 31802634 31802937 -150612305 - AluSq SINE Alu -24 289 1 368 104 30 30 chr6 31802937 31803004 -150612238 - AluSc SINE Alu -7 292 226 7157 120 128 96 chr6 31803007 31804651 -150610591 - pTR5 LTR ERV1 0 2438 742 1801 109 0 0 chr6 31804651 31804881 -150610361 - AluSx SINE Alu -82 230 1 216 250 0 0 chr6 31805076 31805131 -150610111 + MIR SINE MIR 102 157 -51 1518 143 0 41 chr6 31805399 31805644 -150609598 - AluJb SINE Alu -21 291 57 2150 120 3 0 chr6 31805892 31806184 -150609058 + AluSx SINE Alu 1 293 -19 2398 73 3 3 chr6 31806849 31807149 -150608093 - AluSc SINE Alu -9 300 1 277 324 189 22 chr6 31807574 31808003 -150607239 - L2 LINE L2 -1004 2310 1789 1166 262 90 31 chr6 31808003 31808427 -150606815 + LTR16A LTR ERVL 2 450 0 277 324 189 22 chr6 31808427 31808485 -150606757 - L2 LINE L2 -1525 1789 1742 414 219 37 0 chr6 31808493 31808575 -150606667 + FRAM/FAM SINE Alu 1 77 -99 2065 127 27 13 chr6 31808684 31808856 -150606386 - AluJb SINE Alu -8 304 125 2331 94 3 3 chr6 31808856 31809155 -150606087 - AluSp SINE Alu -14 299 1 2065 127 27 13 chr6 31809155 31809282 -150605960 - AluJb SINE Alu -187 125 1 333 414 30 20 chr6 31809283 31809481 -150605761 - L3 LINE CR1 -1351 226 27 224 264 299 0 chr6 31810577 31810664 -150604578 - L2 LINE L2 0 3272 3160 2426 98 0 0 chr6 31810835 31811141 -150604101 + AluSg SINE Alu 1 306 -4 456 123 0 0 chr6 31811173 31811246 -150603996 + (TTC)n Simple_repeat Simple_repeat 3 75 0 365 167 0 0 chr6 31811248 31811314 -150603928 - Alu SINE Alu -1 301 236 1902 172 3 3 chr6 31811596 31811898 -150603344 + AluJo SINE Alu 5 306 -6 259 208 0 0 chr6 31811971 31812019 -150603223 + MER57A LTR ERV1 292 339 -64 1337 111 0 0 chr6 31812026 31812207 -150603035 + AluSg/x SINE Alu 121 301 -11 216 245 0 75 chr6 31812390 31812443 -150602799 - MIR3 SINE MIR -49 159 111 288 258 32 11 chr6 31812523 31812616 -150602626 + MER5B DNA MER1_type 18 112 -66 2243 70 39 3 chr6 31812983 31813267 -150601975 - AluSx SINE Alu -18 294 1 527 273 105 6 chr6 31813595 31813767 -150601475 - MIR SINE MIR -1 261 73 2189 110 0 38 chr6 31813842 31814159 -150601083 + AluSx SINE Alu 1 305 -7 672 171 39 23 chr6 31814296 31814425 -150600817 - FLAM_A SINE Alu -2 131 1 343 194 45 0 chr6 31817400 31817467 -150597775 - MER50 LTR ERV1 -6 728 659 1217 127 42 14 chr6 31817477 31817689 -150597553 - MER50 LTR ERV1 -516 218 1 1075 170 0 0 chr6 31818838 31819003 -150596239 + FRAM SINE Alu 1 165 -1 1519 251 53 2 chr6 31819540 31819958 -150595284 + L1ME3A LINE L1 5724 6162 -8 1777 96 114 36 chr6 31819980 31820260 -150594982 + AluSx SINE Alu 1 302 -10 1380 201 138 39 chr6 31820413 31820855 -150594387 + MLT2B1 LTR ERVL 5 490 -30 201 65 22 43 chr6 31820868 31820914 -150594328 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 2172 146 0 0 chr6 31820918 31821227 -150594015 - AluJo SINE Alu -3 309 1 1035 214 124 105 chr6 31821529 31821746 -150593496 + MLT1H1 LTR MaLR 5 217 -338 2412 95 0 3 chr6 31821746 31822050 -150593192 + AluSg SINE Alu 1 303 -7 1035 214 124 105 chr6 31822050 31822062 -150593180 + MLT1H1 LTR MaLR 217 227 -328 1609 167 37 0 chr6 31822062 31822331 -150592911 + AluJo SINE Alu 1 279 -33 1035 214 124 105 chr6 31822331 31822641 -150592601 + MLT1H1 LTR MaLR 227 555 0 1734 169 46 54 chr6 31823302 31823610 -150591632 + MLT1A2 LTR MaLR 3 309 -65 1803 155 3 42 chr6 31823610 31823754 -150591488 + AluJb SINE Alu 1 128 -184 2363 93 0 3 chr6 31823754 31824054 -150591188 + AluSx SINE Alu 6 304 -8 1803 155 3 42 chr6 31824054 31824218 -150591024 + AluJb SINE Alu 128 297 -15 1734 169 46 54 chr6 31824218 31824281 -150590961 + MLT1A2 LTR MaLR 309 371 -3 1674 148 50 14 chr6 31824812 31825090 -150590152 - AluJo SINE Alu -24 288 1 1528 271 53 27 chr6 31825165 31825766 -150589476 - L1MC4a LINE L1 -1733 6075 5459 32 57 0 0 chr6 31826112 31826165 -150589077 + AT_rich Low_complexity Low_complexity 1 53 0 2336 108 0 3 chr6 31826372 31826679 -150588563 - AluSc SINE Alu -3 306 1 465 215 51 82 chr6 31826840 31827035 -150588207 - MLT1J LTR MaLR -33 478 290 2409 99 0 0 chr6 31827072 31827374 -150587868 - AluSq SINE Alu -7 306 5 319 164 0 41 chr6 31827893 31827918 -150587324 - MER72 LTR ERV1 0 722 698 1400 172 122 7 chr6 31827918 31828040 -150587202 + AluJo SINE Alu 1 108 -204 234 0 0 0 chr6 31828040 31828066 -150587176 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1400 172 122 7 chr6 31828066 31828222 -150587020 + AluJo SINE Alu 108 311 -1 319 164 0 41 chr6 31828222 31828269 -150586973 - MER72 LTR ERV1 -24 698 653 649 146 10 0 chr6 31828272 31828368 -150586874 + AluJ/FLAM SINE Alu 3 99 -213 1641 127 15 42 chr6 31828369 31828717 -150586525 - MER61C LTR ERV1 0 434 1 1072 165 0 0 chr6 31828754 31828924 -150586318 + FRAM SINE Alu 1 170 -6 975 262 118 3 chr6 31828977 31829324 -150585918 - LTR16C LTR ERVL 0 491 105 1363 89 25 5 chr6 31829752 31829955 -150585287 + MER49 LTR ERV1 1 207 -716 2112 110 3 19 chr6 31930215 31930532 -150484710 + AluSx SINE Alu 1 312 0 949 64 24 0 chr6 31930580 31930705 -150484537 - AluSp/q SINE Alu -19 294 167 1320 146 39 39 chr6 31930705 31930959 -150484283 + AluJo SINE Alu 27 280 -32 404 159 130 0 chr6 31931312 31931381 -150483861 - AluJ/FLAM SINE Alu -233 79 2 2311 74 7 7 chr6 31931399 31931696 -150483546 - AluSp SINE Alu -16 297 1 197 0 71 0 chr6 31933650 31933678 -150481564 + (CTGGGG)n Simple_repeat Simple_repeat 1 30 0 2414 52 10 3 chr6 31934548 31934856 -150480386 - AluY SINE Alu -1 310 1 2316 78 7 0 chr6 31934856 31935162 -150480080 - AluSg SINE Alu -1 309 1 392 275 92 0 chr6 31935411 31935520 -150479722 + Charlie2 DNA MER1_type 26 144 -2718 2059 133 0 13 chr6 31935611 31935927 -150479315 - AluSx SINE Alu 0 312 1 1592 154 19 68 chr6 31935952 31936277 -150478965 - AluJb SINE Alu -3 309 1 360 183 29 203 chr6 31936354 31936515 -150478727 + Charlie2 DNA MER1_type 2578 2765 -97 1742 105 82 8 chr6 31936515 31936811 -150478431 + AluSx SINE Alu 1 316 0 360 183 29 203 chr6 31936811 31936916 -150478326 + Charlie2 DNA MER1_type 2765 2788 -74 1784 153 7 3 chr6 31936916 31937210 -150478032 + AluJb SINE Alu 1 295 -17 360 183 29 203 chr6 31937210 31937251 -150477991 + Charlie2 DNA MER1_type 2788 2834 -28 2422 60 0 10 chr6 31937427 31937741 -150477501 + AluY SINE Alu 1 311 0 2218 95 0 7 chr6 31937754 31938058 -150477184 + AluSx SINE Alu 4 305 -7 21 36 0 0 chr6 31938240 31938268 -150476974 + AT_rich Low_complexity Low_complexity 1 28 0 184 311 220 10 chr6 31938636 31938845 -150476397 + L2 LINE L2 2932 3184 -88 1845 169 3 0 chr6 31939169 31939464 -150475778 - AluJo SINE Alu -16 296 1 234 0 0 0 chr6 31939475 31939501 -150475741 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2134 108 0 3 chr6 31939504 31939792 -150475450 - AluSx SINE Alu -25 287 1 1595 144 63 0 chr6 31939794 31940064 -150475178 - AluJb SINE Alu -21 291 5 351 175 16 0 chr6 31940081 31940144 -150475098 + LTR16C LTR ERVL 426 489 -2 508 243 112 56 chr6 31940189 31940403 -150474839 - MIR SINE MIR -31 231 6 2195 99 0 19 chr6 31940409 31940721 -150474521 - AluSg SINE Alu -4 306 1 254 250 0 0 chr6 31940981 31941037 -150474205 + FAM SINE Alu 118 173 -2 815 175 7 14 chr6 31941041 31941184 -150474058 + FLAM_A SINE Alu 1 142 0 1471 158 57 57 chr6 31941185 31941333 -150473909 + AluJo SINE Alu 1 148 -164 2154 59 42 7 chr6 31941333 31941621 -150473621 + AluY SINE Alu 2 299 -12 1471 158 57 57 chr6 31941621 31941770 -150473472 + AluJo SINE Alu 147 298 -14 180 0 0 0 chr6 31941909 31941929 -150473313 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1022 142 0 12 chr6 31941929 31942091 -150473151 - AluJb SINE Alu -19 293 134 220 371 57 8 chr6 31942205 31942329 -150472913 + L2 LINE L2 3123 3252 -20 273 313 61 0 chr6 31942333 31942448 -150472794 - MIR SINE MIR -109 153 32 273 290 97 35 chr6 31943042 31943187 -150472055 - L2 LINE L2 0 3272 3119 219 291 105 12 chr6 31943553 31943639 -150471603 + MIR3 SINE MIR 3 96 -112 300 295 6 66 chr6 31944019 31944185 -150471057 - L2 LINE L2 -63 3250 3095 1648 86 0 0 chr6 31944210 31944419 -150470823 - AluSq SINE Alu -23 290 82 459 0 0 0 chr6 31944440 31944491 -150470751 + (TAA)n Simple_repeat Simple_repeat 2 52 0 2094 110 7 0 chr6 31947074 31947366 -150467876 - AluSx SINE Alu -18 294 1 462 277 115 65 chr6 31947524 31947742 -150467500 + MIR SINE MIR 30 254 -8 267 98 27 2 chr6 31947800 31947848 -150467394 - FLAM_A SINE Alu -73 59 16 2202 88 0 7 chr6 31949264 31949559 -150465683 - AluSq SINE Alu -20 293 1 446 321 73 24 chr6 31949821 31949986 -150465256 - MIR SINE MIR -70 192 20 479 245 182 0 chr6 31950124 31950267 -150464975 - MER3 DNA MER1_type -14 195 27 356 333 111 5 chr6 31951768 31952010 -150463232 + MIR SINE MIR 1 262 0 672 261 27 69 chr6 31952052 31952127 -150463115 - MIR SINE MIR 0 262 185 1990 126 3 26 chr6 31952127 31952437 -150462805 - AluSx SINE Alu -9 303 1 672 261 27 69 chr6 31952437 31952621 -150462621 - MIR SINE MIR -77 185 14 2044 136 13 3 chr6 31952910 31953219 -150462023 + AluSq SINE Alu 1 312 -1 249 264 57 57 chr6 31953234 31953340 -150461902 - MIR SINE MIR -62 200 95 27 0 0 0 chr6 31954091 31954118 -150461124 + AT_rich Low_complexity Low_complexity 1 27 0 755 124 35 0 chr6 31954123 31954236 -150461006 - FLAM_C SINE Alu -25 118 2 210 37 0 0 chr6 31957098 31957125 -150458117 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 298 200 57 29 chr6 31958239 31958344 -150456898 - L1MC5 LINE L1 -35 7926 7819 1835 206 48 56 chr6 31958437 31958936 -150456306 + MLT1D LTR MaLR 2 496 -9 479 230 0 0 chr6 31962161 31962261 -150452981 + L2 LINE L2 3189 3288 -25 367 315 79 18 chr6 31962444 31962513 -150452729 - MIR SINE MIR -50 212 149 2008 75 44 34 chr6 31962513 31962807 -150452435 + AluSx SINE Alu 1 297 -15 367 315 79 18 chr6 31962807 31962912 -150452330 - MIR SINE MIR -113 149 30 355 330 58 12 chr6 31962946 31963119 -150452123 - MIR SINE MIR 0 262 82 845 138 7 22 chr6 31963278 31963416 -150451826 + AluJ SINE Alu 3 138 -174 1824 122 74 0 chr6 31963445 31963715 -150451527 + AluSg SINE Alu 1 290 -20 974 180 53 0 chr6 31963740 31963929 -150451313 + AluJ SINE Alu 114 312 0 2068 127 3 0 chr6 31963929 31964229 -150451013 + AluSq SINE Alu 11 311 -2 416 241 77 51 chr6 31964433 31964619 -150450623 + MIR SINE MIR 33 215 -27 819 111 8 8 chr6 31965046 31965184 -150450058 - FLAM_C SINE Alu 0 138 1 2278 81 3 3 chr6 31965337 31965646 -150449596 - AluSc SINE Alu 0 309 1 2220 64 4 4 chr6 31966136 31966468 -150448774 - AluY SINE Alu 0 332 1 2245 104 0 0 chr6 31966524 31966823 -150448419 + AluSq SINE Alu 1 299 -14 2115 106 3 0 chr6 31966883 31967176 -150448066 - AluSq SINE Alu -19 294 1 1790 183 3 0 chr6 31967187 31967498 -150447744 - AluJb SINE Alu 0 312 1 10685 193 67 50 chr6 31967499 31967944 -150447298 + L1M1 LINE L1 73 509 -7056 818 182 0 0 chr6 31967944 31968076 -150447166 + FLAM_C SINE Alu 1 132 -1 10685 193 67 50 chr6 31968076 31968867 -150446375 + L1M1 LINE L1 509 1285 -6280 2028 124 7 0 chr6 31968867 31969166 -150446076 - AluSx SINE Alu -11 301 1 10685 193 67 50 chr6 31969166 31969923 -150445319 + L1M1 LINE L1 1285 2028 -5537 2103 96 7 7 chr6 31969923 31970215 -150445027 + AluSc SINE Alu 1 292 -17 10685 193 67 50 chr6 31970215 31970386 -150444856 + L1M1 LINE L1 2028 2195 -5370 1942 151 0 19 chr6 31970386 31970704 -150444538 - AluSx SINE Alu 0 312 1 10685 193 67 50 chr6 31970704 31971492 -150443750 + L1M1 LINE L1 2195 3180 -4385 4203 81 18 20 chr6 31971492 31971906 -150443336 + L1MA2 LINE L1 5697 6111 -193 1963 143 0 0 chr6 31971906 31972206 -150443036 - AluSx SINE Alu -12 300 1 4203 81 18 20 chr6 31972206 31972400 -150442842 + L1MA2 LINE L1 6111 6304 0 2148 84 3 3 chr6 31972425 31972767 -150442475 + AluSp SINE Alu 1 342 0 3522 169 17 30 chr6 31972781 31973185 -150442057 - L1MB8 LINE L1 -68 6110 5709 219 69 0 0 chr6 31973185 31973214 -150442028 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3522 169 17 30 chr6 31973214 31973550 -150441692 - L1MB8 LINE L1 -469 5709 5370 2173 122 0 0 chr6 31973558 31973870 -150441372 + AluSx SINE Alu 1 312 0 4483 114 24 36 chr6 31974225 31974454 -150440788 - MER50 LTR ERV1 -23 711 481 2348 87 7 0 chr6 31974454 31974764 -150440478 - AluSx SINE Alu 0 312 1 4483 114 24 36 chr6 31974764 31975254 -150439988 - MER50 LTR ERV1 -253 481 1 25 0 0 0 chr6 31975376 31975401 -150439841 + AT_rich Low_complexity Low_complexity 1 25 0 225 222 0 0 chr6 31975560 31975605 -150439637 - L1MC4a LINE L1 -916 6892 6848 381 43 0 0 chr6 31975624 31975671 -150439571 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1669 168 27 3 chr6 31975683 31975981 -150439261 - AluJb SINE Alu -7 305 1 359 291 11 84 chr6 31975981 31976160 -150439082 - L1MC4 LINE L1 -1112 6930 6765 1647 151 11 25 chr6 31976212 31976521 -150438721 - AluJb SINE Alu 0 305 1 794 111 22 44 chr6 31976908 31977043 -150438199 + MLT1B LTR MaLR 16 147 -243 1999 119 0 0 chr6 31977886 31978163 -150437079 + AluSx SINE Alu 1 277 -35 288 0 0 0 chr6 31978171 31978203 -150437039 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 513 268 32 25 chr6 31978779 31978936 -150436306 + MIR SINE MIR 105 262 0 1704 119 48 24 chr6 31978952 31979109 -150436133 - AluSx SINE Alu -10 302 133 2109 111 20 0 chr6 31979109 31979407 -150435835 - AluSx SINE Alu -8 304 1 1704 119 48 24 chr6 31979407 31979544 -150435698 - AluSx SINE Alu -179 133 1 503 205 86 8 chr6 31979546 31979663 -150435579 - MIR SINE MIR -67 195 70 657 128 96 32 chr6 31980049 31980174 -150435068 - FLAM_C SINE Alu 0 133 1 1899 130 65 6 chr6 31980590 31980914 -150434328 - MER61A LTR ERV1 0 343 1 1159 154 4 53 chr6 31981125 31981372 -150433870 - AluJo SINE Alu -77 235 1 303 258 114 74 chr6 31981458 31981756 -150433486 - L1M2 LINE L1 -4797 2052 1743 2177 98 0 10 chr6 31981787 31982093 -150433149 + AluSp SINE Alu 1 303 -10 31 26 0 0 chr6 31982093 31982131 -150433111 + AT_rich Low_complexity Low_complexity 1 38 0 1829 142 3 0 chr6 31982131 31982413 -150432829 - AluJb SINE Alu -29 283 1 716 173 17 23 chr6 31982428 31982601 -150432641 + L1MB4 LINE L1 5776 5947 -233 24 0 0 0 chr6 31982623 31982647 -150432595 + AT_rich Low_complexity Low_complexity 1 24 0 374 100 17 0 chr6 31982699 31982759 -150432483 + (TG)n Simple_repeat Simple_repeat 2 62 0 1009 161 5 55 chr6 31982769 31982803 -150432439 - L1MB4 LINE L1 -14 6166 6132 270 0 0 0 chr6 31982803 31982833 -150432409 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2106 96 0 0 chr6 31982837 31983118 -150432124 - AluSx SINE Alu -31 281 1 1009 161 5 55 chr6 31983118 31983295 -150431947 - L1MB4 LINE L1 -51 6129 5961 794 140 0 70 chr6 31983303 31983446 -150431796 - FLAM_C SINE Alu 0 133 1 711 132 20 123 chr6 31983521 31983652 -150431590 - L1MB4 LINE L1 -233 5947 5839 2103 78 0 11 chr6 31983652 31983960 -150431282 + AluSx SINE Alu 2 306 0 711 132 20 123 chr6 31983960 31984029 -150431213 - L1MB4 LINE L1 -341 5839 5765 911 102 0 29 chr6 31984069 31984206 -150431036 - FLAM_C SINE Alu 0 133 1 309 226 116 110 chr6 31984530 31984676 -150430566 - L1MC5 LINE L1 -36 7925 7779 753 237 6 35 chr6 31985236 31985325 -150429917 - MER115 DNA AcHobo -81 612 529 662 226 89 96 chr6 31985325 31985561 -150429681 + LTR16A1 LTR ERVL 1 235 -222 2061 92 0 7 chr6 31985561 31985873 -150429369 - AluSq SINE Alu 0 310 1 662 226 89 96 chr6 31985873 31986095 -150429147 + LTR16A1 LTR ERVL 235 457 0 753 237 6 35 chr6 31986095 31986178 -150429064 - MER115 DNA AcHobo -164 529 445 763 332 77 16 chr6 31986248 31986558 -150428684 - MER115 DNA AcHobo -359 334 6 554 200 37 0 chr6 31987143 31987278 -150427964 + L1MD3 LINE L1 7844 7983 -12 2067 86 4 0 chr6 31987332 31987646 -150427596 + AluSq SINE Alu 5 319 0 1882 126 0 23 chr6 31988632 31988933 -150426309 - AluSq SINE Alu -17 296 3 523 62 0 0 chr6 31988951 31989015 -150426227 - U6 snRNA snRNA -6 101 38 1170 99 0 12 chr6 31989057 31989219 -150426023 - AluSq SINE Alu -153 160 1 22 56 0 0 chr6 31989271 31989307 -150425935 + AT_rich Low_complexity Low_complexity 1 36 0 260 283 67 8 chr6 31989501 31989621 -150425621 - LTR67 LTR ERVL 0 557 431 1837 141 23 13 chr6 31989850 31990154 -150425088 - AluSx SINE Alu -5 307 1 1392 230 100 84 chr6 31990194 31990489 -150424753 - HAL1 LINE L1 -689 1818 1529 1705 157 23 33 chr6 31990489 31990789 -150424453 + AluJo SINE Alu 13 309 -3 1392 230 100 84 chr6 31990789 31991127 -150424115 - HAL1 LINE L1 -978 1529 1171 1950 127 33 7 chr6 31991127 31991427 -150423815 - AluSx SINE Alu -4 308 1 1392 230 100 84 chr6 31991427 31991480 -150423762 - HAL1 LINE L1 -1336 1171 1120 409 237 50 111 chr6 31991483 31991608 -150423634 - HAL1 LINE L1 -1471 1036 926 1687 162 30 3 chr6 31991608 31991910 -150423332 - AluJb SINE Alu -2 310 1 409 237 50 111 chr6 31991910 31991982 -150423260 - HAL1 LINE L1 -1581 926 851 594 226 94 19 chr6 31991985 31992144 -150423098 + LTR41 LTR ERVL 9 179 -594 251 158 85 85 chr6 31992509 31992591 -150422651 + LTR41 LTR ERVL 651 732 -41 676 221 197 52 chr6 31992748 31992800 -150422442 - LTR50 LTR ERVL -8 787 744 2179 99 7 0 chr6 31992800 31993102 -150422140 - AluSq SINE Alu -7 306 3 676 221 197 52 chr6 31993102 31993564 -150421678 - LTR50 LTR ERVL -51 744 93 349 374 35 0 chr6 31993607 31993781 -150421461 - HAL1 LINE L1 -1787 720 541 199 131 36 36 chr6 31993790 31993874 -150421368 + T-rich Low_complexity Low_complexity 2 85 0 857 157 0 8 chr6 31993926 31994060 -150421182 - FLAM_C SINE Alu 0 133 1 550 283 113 36 chr6 31994107 31994418 -150420824 - HAL1 LINE L1 -2045 462 110 221 0 35 0 chr6 31994418 31994447 -150420795 + (TC)n Simple_repeat Simple_repeat 1 30 0 550 283 113 36 chr6 31994447 31994549 -150420693 - HAL1 LINE L1 -2397 110 17 2010 107 0 29 chr6 31994567 31994876 -150420366 + AluSp SINE Alu 1 300 -13 1790 158 0 7 chr6 31995395 31995716 -150419526 + AluJb SINE Alu 1 319 0 1768 155 10 7 chr6 31995720 31996017 -150419225 + AluJb SINE Alu 1 298 -14 366 250 20 40 chr6 31996033 31996133 -150419109 - L1ME4a LINE L1 -58 6063 5966 876 204 32 0 chr6 31996134 31996320 -150418922 - AluJo SINE Alu 0 312 121 1991 118 10 3 chr6 31996631 31996937 -150418305 + AluSx SINE Alu 1 308 -4 1253 206 0 40 chr6 31996946 31997194 -150418048 + MER8 DNA MER2_type 1 238 -1 35 24 0 0 chr6 31997800 31997842 -150417400 + AT_rich Low_complexity Low_complexity 1 42 0 1722 167 0 17 chr6 31997842 31998135 -150417107 - AluJb SINE Alu -24 288 1 1690 153 122 82 chr6 31998138 31998494 -150416748 + MLT2D LTR ERVL 7 382 -32 228 35 0 0 chr6 31998494 31998523 -150416719 + (GA)n Simple_repeat Simple_repeat 1 29 0 1690 153 122 82 chr6 31998523 31998558 -150416684 + MLT2D LTR ERVL 382 414 0 1573 109 113 4 chr6 31998708 31998985 -150416257 - AluSx SINE Alu 0 305 1 250 276 86 9 chr6 31999127 31999243 -150415999 - L1ME4a LINE L1 -381 5740 5616 1528 171 49 3 chr6 31999887 32000191 -150415051 - MER33 DNA MER1_type -6 318 1 2029 105 0 33 chr6 32000283 32000588 -150414654 - AluSq SINE Alu -18 295 1 1308 200 0 24 chr6 32001588 32001843 -150413399 + AluJb SINE Alu 7 255 -57 301 298 50 21 chr6 32001843 32001984 -150413258 + L1M4 LINE L1 3182 3326 -2820 227 264 111 14 chr6 32002126 32002198 -150413044 - MIR3 SINE MIR -125 83 5 284 322 76 17 chr6 32002267 32002385 -150412857 + L2 LINE L2 3189 3313 0 270 136 0 0 chr6 32002464 32002508 -150412734 + (TA)n Simple_repeat Simple_repeat 1 44 0 797 151 0 0 chr6 32002508 32002627 -150412615 - FLAM_C SINE Alu -20 123 5 597 251 30 12 chr6 32002659 32002826 -150412416 + MER104 DNA Tc2 4 173 -7 885 55 12 93 chr6 32003736 32003993 -150411249 + (TCTCCC)n Simple_repeat Simple_repeat 1 236 0 10425 45 8 55 chr6 32003998 32005452 -150409790 + SVA Other Other 2 1386 0 199 231 0 0 chr6 32005801 32005840 -150409402 + L2 LINE L2 3153 3191 -81 200 355 84 0 chr6 32005872 32005979 -150409263 + L3b LINE CR1 1179 1294 -289 468 284 43 81 chr6 32006020 32006231 -150409011 + MIR SINE MIR 30 232 -30 234 310 11 23 chr6 32006236 32006323 -150408919 + L2 LINE L2 3009 3094 -178 2219 105 0 0 chr6 32006482 32006777 -150408465 + AluSg SINE Alu 1 295 -15 498 274 8 0 chr6 32006871 32006995 -150408247 - MER104 DNA Tc2 -3 177 53 625 177 24 8 chr6 32007010 32007134 -150408108 - FLAM_C SINE Alu -5 128 3 2156 109 0 3 chr6 32007146 32007449 -150407793 - AluSx SINE Alu -6 306 5 342 238 90 58 chr6 32007555 32007744 -150407498 - L2 LINE L2 -89 3224 3030 1968 153 0 0 chr6 32008649 32008956 -150406286 - AluJo SINE Alu -5 307 1 1843 153 6 10 chr6 32008962 32009275 -150405967 - AluJb SINE Alu 0 312 1 450 250 73 101 chr6 32009977 32010305 -150404937 - MLT1J LTR MaLR -84 427 109 2120 91 7 0 chr6 32010907 32011192 -150404050 + AluSx SINE Alu 1 287 -25 2201 79 3 3 chr6 32011871 32012162 -150403080 + AluSq SINE Alu 1 291 -22 2066 104 7 7 chr6 32012850 32013149 -150402093 - AluSg SINE Alu -11 299 1 3253 135 18 6 chr6 32014001 32014490 -150400752 + LTR42 LTR ERVL 1 495 0 243 0 0 0 chr6 32016712 32016739 -150398503 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 2126 120 0 0 chr6 32016755 32017055 -150398187 - AluSx SINE Alu -12 300 1 1527 189 0 7 chr6 32017064 32017360 -150397882 - AluJo SINE Alu -1 311 18 2137 103 59 18 chr6 32018446 32018787 -150396455 - THE1A LTR MaLR 0 355 1 1874 148 6 10 chr6 32019123 32019520 -150395722 - AluJb SINE Alu 0 397 2 287 167 17 17 chr6 32019636 32019696 -150395546 - L1ME1 LINE L1 -11 6155 6096 576 181 101 0 chr6 32019719 32019868 -150395374 - L1MD3 LINE L1 0 7995 7832 960 123 0 0 chr6 32019910 32020048 -150395194 - AluSp SINE Alu -23 290 153 1224 156 54 0 chr6 32020071 32020295 -150394947 - L1MD3 LINE L1 -871 7124 6889 829 180 48 12 chr6 32020295 32020462 -150394780 - FRAM SINE Alu -7 169 1 1646 198 0 0 chr6 32020475 32020773 -150394469 - AluJo SINE Alu -14 298 1 1868 136 7 10 chr6 32020788 32021097 -150394145 - AluSp SINE Alu -5 308 1 1200 241 33 13 chr6 32021098 32021397 -150393845 - L1MC4 LINE L1 -1114 6928 6624 1656 139 168 0 chr6 32021398 32021707 -150393535 - MER46B DNA MER2_type 0 236 1 1465 255 133 32 chr6 32021711 32021991 -150393251 - L1MD3 LINE L1 -1388 6607 6357 1585 161 50 17 chr6 32021991 32022289 -150392953 - AluJo SINE Alu -4 308 1 1465 255 133 32 chr6 32022289 32022655 -150392587 - L1MD3 LINE L1 -1638 6357 5896 1761 154 43 3 chr6 32023099 32023398 -150391844 - AluJo SINE Alu -1 311 1 322 308 204 36 chr6 32023659 32024016 -150391226 + L2 LINE L2 2856 3272 0 26 0 0 0 chr6 32024133 32024159 -150391083 + AT_rich Low_complexity Low_complexity 1 26 0 1011 182 76 57 chr6 32024197 32024257 -150390985 - L1ME2 LINE L1 -9 6155 6098 2093 163 0 0 chr6 32024257 32024563 -150390679 - AluJb SINE Alu -6 306 1 1011 182 76 57 chr6 32024563 32024766 -150390476 - L1ME2 LINE L1 -66 6098 5887 2157 134 0 10 chr6 32024796 32025102 -150390140 - AluSx SINE Alu -9 303 1 953 261 15 52 chr6 32027133 32027401 -150387841 - MIR SINE MIR 0 262 5 2093 115 7 10 chr6 32027642 32027937 -150387305 + AluSx SINE Alu 1 294 -18 351 289 248 8 chr6 32028381 32028623 -150386619 + L3 LINE CR1 1261 1560 -17 2252 133 0 0 chr6 32029229 32029537 -150385705 + AluSg SINE Alu 1 308 -2 281 104 10 0 chr6 32029725 32029777 -150385465 + Alu SINE Alu 254 296 -6 2401 50 0 4 chr6 32029779 32030105 -150385137 + AluY SINE Alu 1 325 0 225 170 21 0 chr6 32030491 32030538 -150384704 + MER63A DNA MER1_type 6 53 -157 343 231 0 13 chr6 32030638 32030716 -150384526 + LTR33A LTR ERVL 447 523 0 346 321 74 28 chr6 32031131 32031346 -150383896 + HERVL LTR ERVL 479 703 -5061 2683 174 47 16 chr6 32031440 32031735 -150383507 - MLT1D LTR MaLR 0 505 188 2207 121 0 0 chr6 32031735 32032032 -150383210 - AluSg SINE Alu -13 297 1 2683 174 47 16 chr6 32032032 32032226 -150383016 - MLT1D LTR MaLR -317 188 1 1093 234 56 0 chr6 32032277 32032563 -150382679 + MLT1E3 LTR MaLR 323 624 0 632 347 131 22 chr6 32032637 32033225 -150382017 + HERVL LTR ERVL 1186 1837 -3927 2023 139 7 23 chr6 32033419 32033728 -150381514 + AluSx SINE Alu 1 304 -8 323 320 24 8 chr6 32033831 32033956 -150381286 + HERVL LTR ERVL 3149 3275 -2379 2756 292 63 20 chr6 32034000 32035085 -150380157 + HERVL LTR ERVL 3404 4534 -1230 3082 236 49 29 chr6 32035124 32036222 -150379020 - L1ME3 LINE L1 0 6162 5054 224 207 0 134 chr6 32036222 32036241 -150379001 + MIR SINE MIR 178 198 -64 2419 77 0 7 chr6 32036241 32036539 -150378703 - AluSx SINE Alu -16 296 1 224 207 0 134 chr6 32036539 32036601 -150378641 + MIR SINE MIR 198 248 -14 459 364 62 4 chr6 32037814 32038039 -150377203 + MIR SINE MIR 8 245 -17 935 226 55 0 chr6 32038238 32038437 -150376805 + MER63A DNA MER1_type 1 210 0 730 127 18 30 chr6 32038694 32038859 -150376383 + CT-rich Low_complexity Low_complexity 1 163 0 2053 157 3 0 chr6 32038864 32039170 -150376072 - AluSx SINE Alu -5 307 1 2130 141 3 0 chr6 32040196 32040530 -150374712 + L1PB1 LINE L1 5812 6146 -5 831 248 81 14 chr6 32041044 32041254 -150373988 - MER58A DNA MER1_type 0 224 1 2536 70 0 0 chr6 32041520 32041818 -150373424 - AluY SINE Alu -13 298 1 638 301 169 41 chr6 32046646 32046906 -150368336 - L2 LINE L2 0 3313 3088 2055 96 82 0 chr6 32046906 32047187 -150368055 + AluSp SINE Alu 1 304 -9 638 301 169 41 chr6 32047187 32047345 -150367897 - L2 LINE L2 -225 3088 2841 1800 246 77 0 chr6 32047682 32048199 -150367043 - L1MC4 LINE L1 -229 7813 7257 1238 244 63 78 chr6 32048179 32048499 -150366743 - L1MCa LINE L1 -3876 2731 2408 * 1656 199 0 30 chr6 32048499 32048800 -150366442 - AluJb SINE Alu -20 292 1 1238 244 63 78 chr6 32048800 32048900 -150366342 - L1MCa LINE L1 -4199 2408 2308 2032 149 13 0 chr6 32048900 32049201 -150366041 - AluSx SINE Alu -2 310 6 1238 244 63 78 chr6 32049201 32049558 -150365684 - L1MCa LINE L1 -4299 2308 1965 1194 115 42 36 chr6 32049613 32049805 -150365437 + AluSp SINE Alu 17 209 -104 7424 130 90 96 chr6 32049808 32051514 -150363728 - pTR5 LTR ERV1 0 2438 743 720 71 0 10 chr6 32051514 32051612 -150363630 + AluSp SINE Alu 206 302 -11 531 309 75 14 chr6 32051638 32052093 -150363149 - L1MCa LINE L1 -4725 1882 1279 2137 110 0 0 chr6 32052209 32052482 -150362760 - AluSx SINE Alu -39 273 1 1394 293 150 31 chr6 32052613 32053418 -150361824 - L2 LINE L2 -592 2722 1822 356 291 70 78 chr6 32053456 32053902 -150361340 + HAL1 LINE L1 75 516 -1991 6344 126 189 73 chr6 32053915 32055435 -150359807 - pTR5 LTR ERV1 -1 2437 742 2570 241 87 36 chr6 32055442 32056517 -150358725 + HAL1 LINE L1 527 1656 -851 398 276 0 0 chr6 32056535 32056622 -150358620 + MLT1J1 LTR MaLR 36 122 -324 1271 253 44 39 chr6 32056712 32057170 -150358072 + MER74B LTR ERVL 70 529 -93 565 260 52 21 chr6 32057259 32057451 -150357791 + MLT1J1 LTR MaLR 242 439 -7 643 258 103 85 chr6 32057458 32057951 -150357291 + HAL1 LINE L1 1650 2151 -356 412 236 47 99 chr6 32057940 32058173 -150357069 + HAL1 LINE L1 2083 2303 -204 * 898 216 0 0 chr6 32058227 32058389 -150356853 + FRAM SINE Alu 1 162 -4 206 250 0 0 chr6 32058617 32058628 -150356614 + G-rich Low_complexity Low_complexity 1 11 -37 2179 117 3 3 chr6 32058628 32058928 -150356314 + AluSx SINE Alu 1 300 -12 206 250 0 0 chr6 32058928 32058964 -150356278 + G-rich Low_complexity Low_complexity 10 48 0 191 307 20 89 chr6 32059056 32059157 -150356085 + MER5A DNA MER1_type 81 174 -15 343 285 56 21 chr6 32059160 32059304 -150355938 - L2 LINE L2 -1635 1679 1531 398 253 41 89 chr6 32059424 32059570 -150355672 + L2 LINE L2 3134 3272 0 4464 113 19 6 chr6 32060172 32060855 -150354387 + L1PB1 LINE L1 5460 6151 0 704 256 20 5 chr6 32062487 32062682 -150352560 + L1ME3 LINE L1 5903 6100 -62 871 136 0 0 chr6 32062688 32062806 -150352436 + FLAM_C SINE Alu 1 118 -25 21 57 0 0 chr6 32062810 32062845 -150352397 + AT_rich Low_complexity Low_complexity 1 35 0 946 155 155 8 chr6 32062930 32063181 -150352061 + L1MA9 LINE L1 6020 6307 -5 2213 90 27 27 chr6 32063218 32063517 -150351725 + AluSg SINE Alu 11 309 -1 737 268 24 6 chr6 32063752 32063916 -150351326 - MIR SINE MIR -85 177 11 796 221 44 72 chr6 32064812 32065052 -150350190 - Charlie2 DNA MER1_type -6 2856 2628 869 141 0 30 chr6 32065052 32065187 -150350055 - FLAM_C SINE Alu -1 132 2 796 221 44 72 chr6 32065187 32065308 -150349934 - Charlie2 DNA MER1_type -234 2628 2505 649 155 19 0 chr6 32065386 32065489 -150349753 - L1MC1 LINE L1 -6 6327 6223 1191 143 43 0 chr6 32065494 32065703 -150349539 - L1MC1 LINE L1 -196 6137 5920 445 134 109 17 chr6 32065704 32065823 -150349419 - Charlie2 DNA MER1_type -356 2506 2377 1799 266 78 84 chr6 32065823 32065927 -150349315 - Charlie2b DNA MER1_type -1753 1029 926 2260 113 3 0 chr6 32065927 32066229 -150349013 - AluSx SINE Alu -9 303 1 1799 266 78 84 chr6 32066229 32066246 -150348996 - Charlie2b DNA MER1_type -1856 926 910 555 245 204 9 chr6 32066246 32066462 -150348780 - MIR SINE MIR 0 262 5 1799 266 78 84 chr6 32066462 32067374 -150347868 - Charlie2b DNA MER1_type -1872 910 1 2211 119 0 14 chr6 32067704 32067999 -150347243 - AluSx SINE Alu -21 291 1 352 115 0 213 chr6 32068041 32068107 -150347135 - L1MB8 LINE L1 -3 6175 6097 2220 124 0 13 chr6 32068107 32068421 -150346821 + AluSx SINE Alu 1 310 -2 352 115 0 213 chr6 32068421 32068442 -150346800 - L1MB8 LINE L1 -81 6097 6117 2355 87 0 32 chr6 32068442 32068753 -150346489 + AluSx SINE Alu 1 301 -11 352 115 0 213 chr6 32068753 32068786 -150346456 - L1MB8 LINE L1 -60 6118 6080 364 329 79 35 chr6 32068786 32069014 -150346228 - HAL1 LINE L1 -1156 1351 1114 599 181 54 60 chr6 32069293 32069353 -150345889 - LTR47A LTR ERVL 0 452 393 2054 128 34 90 chr6 32069353 32069499 -150345743 + LTR47B LTR ERVL 1 154 -289 1813 171 0 10 chr6 32069499 32069809 -150345433 - AluJo SINE Alu -5 307 1 2054 128 34 90 chr6 32069809 32070131 -150345111 + LTR47B LTR ERVL 154 443 0 599 181 54 60 chr6 32070131 32070236 -150345006 - LTR47A LTR ERVL -59 393 288 4203 128 128 62 chr6 32070446 32071762 -150343480 - pTR5 LTR ERV1 0 2438 741 574 182 0 58 chr6 32071813 32071934 -150343308 - MER4B-int LTR ERV1 -677 6081 5968 2012 127 0 27 chr6 32072310 32072610 -150342632 - AluSx SINE Alu 0 312 21 277 149 0 0 chr6 32072687 32072734 -150342508 - MER4B-int LTR ERV1 -790 5968 5922 308 369 0 0 chr6 32073448 32073589 -150341653 - LTR47A-int LTR ERVL -2426 3259 3119 200 315 0 0 chr6 32073667 32073721 -150341521 - L3 LINE CR1 -957 620 567 570 193 126 0 chr6 32073874 32073993 -150341249 - AluJo SINE Alu -176 136 3 2570 71 7 0 chr6 32074017 32074325 -150340917 - AluSp SINE Alu -3 310 1 610 287 26 26 chr6 32074554 32074861 -150340381 - LTR47A-int LTR ERVL -2466 3581 3275 401 333 35 28 chr6 32075297 32075579 -150339663 - LTR47A-int LTR ERVL -2699 2644 2361 2220 100 0 0 chr6 32075583 32075862 -150339380 + AluSg SINE Alu 1 317 0 263 0 53 0 chr6 32075862 32075900 -150339342 + (CAAAA)n Simple_repeat Simple_repeat 1 180 0 3482 152 2 3 chr6 32075976 32076676 -150338566 + L1PA13 LINE L1 4740 5438 -736 451 100 0 0 chr6 32076676 32076736 -150338506 + AluSp/q SINE Alu 232 291 -22 5538 77 3 15 chr6 32076736 32077006 -150338236 + L1PA13 LINE L1 5422 5694 -469 2257 101 3 3 chr6 32077006 32077304 -150337938 + AluSp SINE Alu 1 298 -15 5538 77 3 15 chr6 32077304 32077784 -150337458 + L1PA13 LINE L1 5694 6163 0 7561 52 3 30 chr6 32078060 32079526 -150335716 + SVA Other Other 154 1425 0 282 339 50 53 chr6 32079530 32079869 -150335373 - LTR47A-int LTR ERVL -4187 1860 1523 2464 84 3 0 chr6 32080301 32080600 -150334642 - AluSq SINE Alu -13 300 1 2214 116 23 0 chr6 32080601 32080903 -150334339 - AluSx SINE Alu -3 309 1 327 333 18 23 chr6 32081879 32082050 -150333192 - LTR47A-int LTR ERVL -5159 184 15 711 224 79 0 chr6 32082067 32082232 -150333010 - LTR47A LTR ERVL 0 452 275 1597 135 8 35 chr6 32082439 32082699 -150332543 + AluJo SINE Alu 1 253 -59 575 253 41 63 chr6 32085829 32085988 -150329254 - MIR SINE MIR -1 261 107 2341 62 56 0 chr6 32085988 32086276 -150328966 + AluSp SINE Alu 1 304 -9 575 253 41 63 chr6 32086276 32086337 -150328905 - MIR SINE MIR -155 107 46 341 254 82 37 chr6 32086590 32086724 -150328518 + MER5A DNA MER1_type 38 177 -12 396 0 0 0 chr6 32087012 32087056 -150328186 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 2217 123 0 0 chr6 32087058 32087360 -150327882 - AluSx SINE Alu -10 302 1 2171 132 3 0 chr6 32087360 32087664 -150327578 - AluSx SINE Alu -7 305 1 506 265 112 18 chr6 32087704 32087874 -150327368 - MIR SINE MIR -75 187 2 2149 164 40 26 chr6 32089375 32089801 -150325441 - MSTB1 LTR MaLR 0 432 1 501 308 39 0 chr6 32090442 32090598 -150324644 - MLT1J LTR MaLR -334 177 16 4277 86 19 81 chr6 32090608 32090769 -150324473 + L1MA1 LINE L1 5616 5785 -517 2389 107 0 0 chr6 32090769 32091068 -150324174 + AluSg SINE Alu 1 299 -11 2208 110 13 13 chr6 32091069 32091379 -150323863 + AluSg SINE Alu 1 310 0 4277 86 19 81 chr6 32091379 32091947 -150323295 + L1MA1 LINE L1 5784 6302 0 21 0 0 0 chr6 32091947 32091968 -150323274 + AT_rich Low_complexity Low_complexity 1 21 0 356 208 13 0 chr6 32091981 32092058 -150323184 - L1MEd LINE L1 -5284 835 758 551 176 46 28 chr6 32092163 32092271 -150322971 - FRAM SINE Alu -45 131 22 30 0 0 0 chr6 32092341 32092371 -150322871 + AT_rich Low_complexity Low_complexity 1 30 0 248 196 41 52 chr6 32092371 32092468 -150322774 - L1MA7 LINE L1 -3 6288 6193 312 248 45 98 chr6 32092550 32092683 -150322559 - L1MEd LINE L1 -5638 481 356 271 256 37 12 chr6 32092954 32093036 -150322206 + MIR SINE MIR 164 247 -15 324 300 40 20 chr6 32093237 32093337 -150321905 - L1MEd LINE L1 -5577 542 441 195 294 88 10 chr6 32093691 32093793 -150321449 + L2 LINE L2 3034 3143 -170 860 136 8 15 chr6 32094384 32094516 -150320726 + AluJb SINE Alu 3 133 -179 703 190 10 105 chr6 32094625 32094825 -150320417 + AluSg/x SINE Alu 118 298 -12 606 263 32 11 chr6 32094845 32095035 -150320207 + L1ME3 LINE L1 5961 6154 -8 2129 132 26 0 chr6 32095078 32095381 -150319861 - AluSx SINE Alu -1 311 1 3002 198 163 15 chr6 32095439 32096188 -150319054 + MER21B LTR ERV1 3 862 -1 637 136 32 0 chr6 32096205 32096330 -150318912 - L1MA7 LINE L1 -18 6273 6145 2291 101 0 3 chr6 32096416 32096712 -150318530 + AluSg SINE Alu 1 295 -15 546 344 20 25 chr6 32096717 32096961 -150318281 + MIR SINE MIR 15 257 -5 2335 92 3 0 chr6 32097748 32098048 -150317194 - AluSq SINE Alu 0 301 1 2129 202 60 84 chr6 32098164 32098846 -150316396 + LTR65 LTR ERV1 1 666 -3 481 141 0 0 chr6 32100148 32100219 -150315023 + MSTA LTR MaLR 1 71 -357 3148 56 86 0 chr6 32100219 32100628 -150314614 - MLT2A1 LTR ERVL 0 444 1 36490 67 9 4 chr6 32100628 32104242 -150311000 - HERVL-A1 LTR ERVL 0 5654 2009 2334 100 10 0 chr6 32104242 32104542 -150310700 - AluSg SINE Alu -5 305 3 36490 67 9 4 chr6 32104542 32105679 -150309563 - HERVL-A1 LTR ERVL -3645 2009 879 2503 90 3 0 chr6 32108426 32108738 -150306504 + AluSp SINE Alu 1 313 0 276 100 0 0 chr6 32109054 32109094 -150306148 + (TCCCC)n Simple_repeat Simple_repeat 1 40 0 665 161 12 12 chr6 32109113 32109274 -150305968 + CT-rich Low_complexity Low_complexity 3 163 0 315 281 137 29 chr6 32109401 32109540 -150305702 - L2 LINE L2 0 3313 3160 2064 116 39 0 chr6 32109765 32110072 -150305170 - AluSq SINE Alu 0 313 1 533 185 0 0 chr6 32110654 32110762 -150304480 + L1MB3 LINE L1 6076 6183 0 282 194 0 0 chr6 32110795 32110857 -150304385 + GA-rich Low_complexity Low_complexity 3 64 0 2418 98 0 3 chr6 32111066 32111373 -150303869 + AluSx SINE Alu 1 306 -6 26 30 0 0 chr6 32111663 32111696 -150303546 + AT_rich Low_complexity Low_complexity 1 33 0 1521 209 34 45 chr6 32111741 32112076 -150303166 - MLT1A2 LTR MaLR 0 374 42 1735 127 57 50 chr6 32112076 32112375 -150302867 + AluJo SINE Alu 1 301 -11 1521 209 34 45 chr6 32112375 32112417 -150302825 - MLT1A2 LTR MaLR -332 42 1 518 246 24 62 chr6 32112529 32112740 -150302502 + HAL1 LINE L1 2299 2501 -6 255 158 88 18 chr6 32112899 32112956 -150302286 + MER5A DNA MER1_type 1 61 -128 737 188 0 15 chr6 32112961 32113094 -150302148 - FLAM_C SINE Alu 0 133 3 2168 132 10 0 chr6 32113106 32113410 -150301832 - AluSg SINE Alu -3 307 1 503 273 106 0 chr6 32113714 32113846 -150301396 + L2 LINE L2 3122 3267 -5 242 325 50 50 chr6 32113853 32114133 -150301109 - L2 LINE L2 -970 2344 2065 264 299 103 0 chr6 32115913 32116010 -150299232 + MIR SINE MIR 66 172 -90 317 179 62 89 chr6 32117483 32117595 -150297647 - L1ME LINE L1 -5255 815 707 201 347 0 13 chr6 32124989 32125064 -150290178 - MIR SINE MIR -56 152 79 660 259 27 23 chr6 32125068 32125288 -150289954 - MIR SINE MIR -3 259 39 298 320 31 16 chr6 32125393 32125521 -150289721 - MIR SINE MIR -50 212 83 300 361 48 7 chr6 32125631 32125783 -150289459 + MIR SINE MIR 37 195 -67 196 317 77 10 chr6 32125943 32126047 -150289195 + L2 LINE L2 3045 3155 -158 2347 109 0 0 chr6 32126077 32126380 -150288862 - AluY SINE Alu -8 303 1 184 42 0 0 chr6 32126383 32126407 -150288835 + (TTG)n Simple_repeat Simple_repeat 2 180 0 1330 206 11 32 chr6 32126407 32126688 -150288554 - AluJb SINE Alu -1 306 9 279 0 0 0 chr6 32126689 32126720 -150288522 + (GCCTG)n Simple_repeat Simple_repeat 4 34 0 433 181 53 0 chr6 32126720 32126814 -150288428 + L2 LINE L2 3215 3313 0 1892 157 23 0 chr6 32127483 32127788 -150287454 + AluSx SINE Alu 1 312 0 372 114 63 0 chr6 32127794 32127873 -150287369 + GA-rich Low_complexity Low_complexity 5 88 0 474 279 132 20 chr6 32128016 32128083 -150287159 + L1ME4a LINE L1 5895 5953 -168 683 155 95 0 chr6 32128083 32128199 -150287043 + FLAM_C SINE Alu 5 131 -2 474 279 132 20 chr6 32128199 32128335 -150286907 + L1ME4a LINE L1 5953 6121 0 289 389 8 24 chr6 32129870 32129996 -150285246 + MIR SINE MIR 123 246 -16 303 285 131 0 chr6 32130164 32130294 -150284948 + MIR SINE MIR 50 196 -66 2211 116 0 6 chr6 32130298 32130609 -150284633 + AluSx SINE Alu 3 311 -1 532 301 82 11 chr6 32130696 32130879 -150284363 - MER91A DNA MER1_type 0 196 1 393 202 90 11 chr6 32132066 32132155 -150283087 + L2 LINE L2 3203 3298 -15 1088 189 32 23 chr6 32132628 32132845 -150282397 + MER20 DNA MER1_type 1 219 0 281 306 102 36 chr6 32133042 32133238 -150282004 - MIR SINE MIR -34 228 20 317 352 83 0 chr6 32133553 32133698 -150281544 - MIR3 SINE MIR -20 188 32 381 227 45 83 chr6 32134124 32134256 -150280986 - MIR SINE MIR 0 262 136 381 199 108 17 chr6 32134242 32134389 -150280853 + MIR SINE MIR 101 262 0 246 244 12 37 chr6 32134366 32134448 -150280794 - MIR SINE MIR -94 168 89 * 888 284 116 14 chr6 32135896 32136090 -150279152 + L1M4 LINE L1 4585 4758 -1388 2382 70 0 7 chr6 32136090 32136389 -150278853 + AluSq SINE Alu 1 297 -16 888 284 116 14 chr6 32136389 32136702 -150278540 + L1M4 LINE L1 4758 5144 -1002 305 306 95 7 chr6 32138138 32138285 -150276957 + MIR SINE MIR 66 225 -37 1691 103 157 0 chr6 32138301 32138563 -150276679 + AluSq SINE Alu 1 303 0 507 73 0 0 chr6 32138563 32138631 -150276611 + (GGGA)n Simple_repeat Simple_repeat 4 71 0 404 206 43 0 chr6 32139018 32139110 -150276132 + MIR SINE MIR 49 144 -118 419 143 0 0 chr6 32139362 32139439 -150275803 + HY1 scRNA scRNA 36 112 0 381 260 70 50 chr6 32140996 32141139 -150274103 - MIR SINE MIR -63 145 45 346 294 0 2 chr6 32141413 32141509 -150273733 + MIR SINE MIR 69 162 -63 2511 101 11 0 chr6 32141509 32141886 -150273356 + LTR57 LTR ERVL 1 381 -30 2052 99 30 16 chr6 32142147 32142450 -150272792 + AluSx SINE Alu 1 307 -5 761 224 93 15 chr6 32143055 32143260 -150271982 + MLT1J LTR MaLR 2 222 -289 180 286 36 0 chr6 32143260 32143316 -150271926 + L2 LINE L2 2753 2810 -504 752 191 120 11 chr6 32143316 32143499 -150271743 + MER3 DNA MER1_type 1 203 -6 928 285 90 46 chr6 32143548 32144004 -150271238 + L2 LINE L2 2818 3293 -20 198 0 0 0 chr6 32144004 32144026 -150271216 + (A)n Simple_repeat Simple_repeat 1 22 0 337 246 56 16 chr6 32144062 32144188 -150271054 + MLT1J LTR MaLR 224 354 -157 204 276 0 92 chr6 32144356 32144375 -150270867 + MIR SINE MIR 126 145 -117 1779 157 0 47 chr6 32144375 32144522 -150270720 + AluJb SINE Alu 1 127 -185 2103 126 0 13 chr6 32144522 32144831 -150270411 + AluSx SINE Alu 1 305 -7 1779 157 0 47 chr6 32144831 32145002 -150270240 + AluJb SINE Alu 127 304 -8 204 276 0 92 chr6 32145002 32145069 -150270173 + MIR SINE MIR 145 204 -58 250 361 0 0 chr6 32145713 32145796 -150269446 + MIR3 SINE MIR 121 203 -5 29 28 0 0 chr6 32147073 32147109 -150268133 + AT_rich Low_complexity Low_complexity 1 36 0 324 209 351 14 chr6 32147177 32147325 -150267917 - MIR SINE MIR -64 198 1 371 236 56 84 chr6 32148013 32148191 -150267051 + MER5A DNA MER1_type 17 189 0 233 239 282 0 chr6 32151465 32151536 -150263706 - L2 LINE L2 -40 3273 3183 297 166 84 32 chr6 32152419 32152520 -150262722 - MER58 DNA MER1_type -4 2416 239 991 64 7 43 chr6 32152573 32152713 -150262529 + AluY SINE Alu 1 135 -176 1165 92 0 65 chr6 32152746 32152930 -150262312 + AluSg/x SINE Alu 120 291 -21 2224 84 3 0 chr6 32153692 32154001 -150261241 + AluSg SINE Alu 1 310 0 911 269 25 12 chr6 32154539 32154781 -150260461 - MIR SINE MIR -5 257 13 185 237 0 0 chr6 32155201 32155239 -150260003 - L2 LINE L2 -10 3262 3225 27 0 0 0 chr6 32155556 32155583 -150259659 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr6 32155583 32155603 -150259639 + (CA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr6 32157805 32157828 -150257414 + GC_rich Low_complexity Low_complexity 1 23 0 565 330 58 5 chr6 32159196 32159420 -150255822 - MIR SINE MIR -14 248 13 2167 128 0 3 chr6 32161418 32161731 -150253511 + AluSx SINE Alu 1 312 0 227 186 14 43 chr6 32163555 32163625 -150251617 + CT-rich Low_complexity Low_complexity 1 68 0 202 241 0 19 chr6 32163814 32163868 -150251374 + GA-rich Low_complexity Low_complexity 2 54 0 2303 87 6 3 chr6 32164229 32164541 -150250701 + AluSq SINE Alu 1 313 0 803 111 55 99 chr6 32164860 32164999 -150250243 + FRAM SINE Alu 1 131 -181 2191 128 0 6 chr6 32164999 32165312 -150249930 - AluSx SINE Alu -1 311 1 803 111 55 99 chr6 32165312 32165353 -150249889 + FRAM SINE Alu 131 172 -4 225 154 0 0 chr6 32165719 32165758 -150249484 + A-rich Low_complexity Low_complexity 1 39 0 1623 169 0 30 chr6 32165760 32166055 -150249187 + AluJo SINE Alu 1 286 -26 257 183 0 28 chr6 32166055 32166126 -150249116 + GA-rich Low_complexity Low_complexity 1 69 0 1123 134 43 16 chr6 32166209 32166224 -150249018 + AluJb SINE Alu 121 134 -178 2306 78 7 10 chr6 32166224 32166531 -150248711 + AluSq SINE Alu 1 306 -7 1123 134 43 16 chr6 32166531 32166702 -150248540 + AluJb SINE Alu 134 312 0 839 228 30 0 chr6 32166706 32166873 -150248369 + AluJo SINE Alu 120 291 -21 2000 102 14 14 chr6 32166879 32167199 -150248043 + AluSq SINE Alu 1 320 0 2080 128 13 0 chr6 32167200 32167505 -150247737 + AluSx SINE Alu 1 309 -3 2035 136 0 16 chr6 32167598 32167915 -150247327 + AluJb SINE Alu 1 312 0 1205 153 5 20 chr6 32167957 32168153 -150247089 - AluSg/x SINE Alu -30 280 88 297 296 125 24 chr6 32168242 32168257 -150246985 + MIR SINE MIR 16 28 -234 2291 94 0 0 chr6 32168257 32168564 -150246678 + AluSg SINE Alu 1 307 -3 297 296 125 24 chr6 32168564 32168777 -150246465 + MIR SINE MIR 28 262 0 196 240 20 0 chr6 32168776 32168826 -150246416 - L3 LINE CR1 -232 1345 1295 * 1093 326 98 27 chr6 32168898 32169673 -150245569 - L2 LINE L2 -98 3174 2346 2337 82 0 7 chr6 32169687 32169991 -150245251 + AluSg SINE Alu 1 302 -8 613 326 100 54 chr6 32170044 32170348 -150244894 - L3 LINE CR1 -396 1181 846 1543 183 37 27 chr6 32170348 32170643 -150244599 - AluJo SINE Alu -4 298 1 613 326 100 54 chr6 32170643 32170817 -150244425 - L3 LINE CR1 -731 846 681 1876 209 65 32 chr6 32170821 32171214 -150244028 + Charlie4a DNA MER1_type 1 415 -1546 2050 140 7 3 chr6 32171214 32171522 -150243720 - AluSx SINE Alu -3 309 1 1876 209 65 32 chr6 32171522 32171620 -150243622 + Charlie4a DNA MER1_type 415 508 0 272 200 15 15 chr6 32176785 32176850 -150238392 + (TGGA)n Simple_repeat Simple_repeat 3 67 0 412 160 51 29 chr6 32176866 32177041 -150238201 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 240 308 58 25 chr6 32177611 32177731 -150237511 - MIR SINE MIR -62 200 77 2288 114 10 0 chr6 32177770 32178076 -150237166 - AluSq SINE Alu -4 309 1 365 240 30 0 chr6 32178133 32178233 -150237009 + LTR33 LTR ERVL 1 103 -418 267 254 145 36 chr6 32178278 32178471 -150236771 + LTR33 LTR ERVL 174 387 -134 361 223 240 0 chr6 32180266 32180387 -150234855 + MER91B DNA MER1_type 40 189 -1 390 21 0 0 chr6 32180471 32180518 -150234724 + (CA)n Simple_repeat Simple_repeat 2 48 0 1260 264 78 26 chr6 32181591 32182311 -150232931 - L2 LINE L2 -253 3060 2308 825 107 9 0 chr6 32182322 32182434 -150232808 + FLAM_C SINE Alu 21 133 -10 455 234 0 57 chr6 32182434 32182558 -150232684 - L2 LINE L2 -994 2320 2204 548 295 12 0 chr6 32183494 32183660 -150231582 - MIR SINE MIR -11 251 84 331 330 76 28 chr6 32183726 32184148 -150231094 + L1MC4a LINE L1 5219 5111 -1035 802 118 0 37 chr6 32184148 32184284 -150230958 + FLAM_C SINE Alu 3 133 0 331 330 76 28 chr6 32184284 32184571 -150230671 + L1MC4a LINE L1 5110 5382 -764 400 232 232 0 chr6 32184954 32185096 -150230146 + MER5A DNA MER1_type 14 188 -1 229 187 0 53 chr6 32187390 32187465 -150227777 + G-rich Low_complexity Low_complexity 1 71 0 247 286 0 13 chr6 32187555 32187632 -150227610 + C-rich Low_complexity Low_complexity 3 78 0 249 206 19 62 chr6 32187720 32187880 -150227362 + (CCCG)n Simple_repeat Simple_repeat 2 154 0 213 111 0 28 chr6 32188477 32188513 -150226729 + (GGA)n Simple_repeat Simple_repeat 1 35 0 1878 133 65 0 chr6 32191635 32191913 -150223329 + AluJb SINE Alu 2 297 -15 2003 118 0 7 chr6 32192355 32192626 -150222616 + AluSx SINE Alu 37 305 -7 2086 119 0 10 chr6 32192642 32192961 -150222281 + AluSq SINE Alu 3 313 0 840 187 13 0 chr6 32193711 32193861 -150221381 + FRAM SINE Alu 21 172 -4 375 299 41 31 chr6 32194460 32194654 -150220588 - MIR SINE MIR -19 243 48 1251 203 72 28 chr6 32194654 32194800 -150220442 - AluJo SINE Alu -8 304 166 2424 92 0 0 chr6 32194800 32195103 -150220139 - AluSg SINE Alu -7 303 1 1251 203 72 28 chr6 32195103 32195247 -150219995 - AluJo SINE Alu -146 166 1 223 258 10 82 chr6 32195454 32195551 -150219691 - MIR SINE MIR -83 125 36 24 0 0 0 chr6 32196035 32196059 -150219183 + AT_rich Low_complexity Low_complexity 1 24 0 3006 136 81 29 chr6 32196234 32196816 -150218426 - LTR9 LTR ERV1 0 612 1 2327 81 0 3 chr6 32196962 32197259 -150217983 + AluY SINE Alu 1 296 -15 3708 92 8 15 chr6 32197290 32197523 -150217719 - MER41A LTR ERV1 0 554 321 2167 115 0 10 chr6 32197523 32197842 -150217400 - AluSq SINE Alu 0 316 1 3708 92 8 15 chr6 32197842 32198141 -150217101 - MER41A LTR ERV1 -233 321 25 1528 192 21 21 chr6 32198141 32198461 -150216781 + AluJb SINE Alu 9 312 0 638 246 59 27 chr6 32198511 32198698 -150216544 - LTR16C LTR ERVL 0 491 299 1698 148 42 61 chr6 32198700 32199077 -150216165 - LTR8A LTR ERV1 0 727 358 5503 197 70 40 chr6 32199109 32199474 -150215768 + L1MDa LINE L1 576 928 -5612 324 0 0 0 chr6 32199474 32199510 -150215732 + (CA)n Simple_repeat Simple_repeat 2 37 0 5503 197 70 40 chr6 32199510 32199571 -150215671 + L1MDa LINE L1 928 986 -5554 1776 185 3 10 chr6 32199571 32199863 -150215379 + AluJb SINE Alu 1 290 -22 5503 197 70 40 chr6 32199863 32200821 -150214421 + L1MDa LINE L1 986 2003 -4537 452 17 33 0 chr6 32200822 32200882 -150214360 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 189 107 0 0 chr6 32200884 32200912 -150214330 + (TG)n Simple_repeat Simple_repeat 1 28 0 705 193 0 0 chr6 32200914 32201033 -150214209 - AluJb SINE Alu -192 120 2 314 180 22 11 chr6 32201033 32201122 -150214120 + L1MDa LINE L1 1995 2084 -4456 1088 242 64 32 chr6 32201122 32201415 -150213827 + MLT1I LTR MaLR 56 338 -71 2125 145 0 0 chr6 32201415 32201712 -150213530 + AluSx SINE Alu 1 297 -15 1088 242 64 32 chr6 32201712 32201740 -150213502 + MLT1I LTR MaLR 338 364 -45 2378 97 0 3 chr6 32201740 32202039 -150213203 - AluSc SINE Alu -11 298 1 1088 242 64 32 chr6 32202039 32202059 -150213183 + MLT1I LTR MaLR 364 409 0 4066 172 56 67 chr6 32202157 32203239 -150212003 - MER11C LTR ERVK 0 1071 1 409 115 0 39 chr6 32203663 32203741 -150211501 - MLT1F LTR MaLR 0 542 468 237 108 0 0 chr6 32203752 32203789 -150211453 + (CA)n Simple_repeat Simple_repeat 2 38 0 5101 98 1 12 chr6 32203874 32204626 -150210616 + Tigger1 DNA MER2_type 846 1589 -829 1089 91 0 0 chr6 32204626 32204758 -150210484 + AluSq/x SINE Alu 1 132 -180 2416 100 0 22 chr6 32204760 32205080 -150210162 + AluSq SINE Alu 1 313 0 4938 115 48 12 chr6 32205080 32205890 -150209352 + Tigger1 DNA MER2_type 1579 2417 -1 1577 195 34 0 chr6 32206025 32206323 -150208919 - AluJo SINE Alu -4 308 1 2511 150 21 2 chr6 32206466 32206886 -150208356 + MSTA LTR MaLR 1 428 0 880 115 4 183 chr6 32207554 32207789 -150207453 - 7SK RNA RNA 0 193 1 1687 122 110 115 chr6 32208180 32208426 -150206816 - MSTA LTR MaLR 0 428 183 2341 94 13 0 chr6 32208426 32208733 -150206509 - AluSp SINE Alu -2 311 1 1687 122 110 115 chr6 32208733 32208895 -150206347 - MSTA LTR MaLR -245 183 22 2250 123 7 0 chr6 32209002 32209303 -150205939 + AluSg SINE Alu 1 303 -7 1469 193 4 23 chr6 32210140 32210404 -150204838 - AluJo SINE Alu -30 282 24 2068 133 33 41 chr6 32210407 32210774 -150204468 + THE1B LTR MaLR 1 364 0 10202 85 26 82 chr6 32210774 32211267 -150203975 + THE1B-int LTR MaLR 1 520 -1060 2297 110 3 13 chr6 32211267 32211576 -150203666 - AluSx SINE Alu -6 306 1 985 87 63 0 chr6 32211576 32211703 -150203539 - AluJb SINE Alu -177 135 1 10202 85 26 82 chr6 32211703 32212756 -150202486 + THE1B-int LTR MaLR 518 1580 0 2009 141 42 33 chr6 32212756 32213117 -150202125 + THE1B LTR MaLR 1 364 0 2211 133 0 0 chr6 32213133 32213435 -150201807 - AluSx SINE Alu -10 302 1 755 246 77 0 chr6 32213470 32213677 -150201565 - MLT1J LTR MaLR -288 223 1 1993 161 7 0 chr6 32213776 32214086 -150201156 - AluJb SINE Alu 0 312 1 258 306 126 9 chr6 32214472 32214583 -150200659 + L2 LINE L2 3149 3272 0 1189 278 80 17 chr6 32216218 32216693 -150198549 - MLT1J LTR MaLR -6 505 1 3760 139 19 17 chr6 32217111 32217553 -150197689 + MER41B LTR ERV1 1 446 -189 2072 118 51 0 chr6 32217553 32217849 -150197393 + AluSx SINE Alu 1 311 -1 3760 139 19 17 chr6 32217849 32218038 -150197204 + MER41B LTR ERV1 446 633 -2 2595 64 0 3 chr6 32218200 32218511 -150196731 - AluY SINE Alu -1 310 1 322 261 35 17 chr6 32218534 32218547 -150196695 - L1MA9 LINE L1 -21 6291 6279 832 241 7 55 chr6 32218547 32218821 -150196421 - L1ME1 LINE L1 -34 6132 5872 384 138 0 0 chr6 32218846 32218904 -150196338 - THE1B LTR MaLR 0 428 371 2290 109 23 0 chr6 32218909 32219213 -150196029 + AluSx SINE Alu 1 311 -1 620 150 9 0 chr6 32219213 32219326 -150195916 + GA-rich Low_complexity Low_complexity 3 116 0 2079 114 7 7 chr6 32219327 32219633 -150195609 - THE1B LTR MaLR -58 306 1 9537 101 43 43 chr6 32219633 32221212 -150194030 - THE1B-int LTR MaLR 0 1580 2 2015 140 6 32 chr6 32221225 32221539 -150193703 - AluSx SINE Alu -6 306 1 2269 108 19 17 chr6 32221539 32221901 -150193341 - THE1B LTR MaLR -1 363 1 272 305 45 23 chr6 32222373 32222550 -150192692 + L1MC5 LINE L1 7729 7909 -52 29 94 0 0 chr6 32223037 32223122 -150192120 + AT_rich Low_complexity Low_complexity 1 85 0 1492 247 82 69 chr6 32223696 32224332 -150190910 + MER21B LTR ERV1 28 671 -192 1437 144 31 126 chr6 32224493 32224819 -150190423 - AluJo SINE Alu -17 295 1 800 96 0 0 chr6 32225092 32225196 -150190046 - AluSg/x SINE Alu -10 302 199 2366 106 0 3 chr6 32225271 32225583 -150189659 - AluSx SINE Alu -1 311 1 21 0 0 0 chr6 32225583 32225604 -150189638 + AT_rich Low_complexity Low_complexity 1 21 0 2419 99 0 3 chr6 32225630 32225942 -150189300 + AluSq SINE Alu 3 313 0 628 205 0 0 chr6 32225946 32226063 -150189179 - FLAM_C SINE Alu -26 117 1 1735 143 8 11 chr6 32226212 32226478 -150188764 + AluSq SINE Alu 1 265 -48 3920 124 44 2 chr6 32226483 32227097 -150188145 + LTR9B LTR ERV1 5 644 0 180 0 0 0 chr6 32227115 32227135 -150188107 + (A)n Simple_repeat Simple_repeat 1 20 0 205 222 10 61 chr6 32228116 32228215 -150187027 + CT-rich Low_complexity Low_complexity 2 95 0 1519 131 20 31 chr6 32228449 32228791 -150186451 - MER61C LTR ERV1 0 434 3 1380 159 0 14 chr6 32228791 32229011 -150186231 + AluJb SINE Alu 95 311 -1 2966 176 73 30 chr6 32229011 32229279 -150185963 - MER49 LTR ERV1 -59 864 609 2423 76 6 19 chr6 32229279 32229593 -150185649 + AluY SINE Alu 1 310 -1 2966 176 73 30 chr6 32229593 32229954 -150185288 - MER49 LTR ERV1 -314 609 208 349 308 62 7 chr6 32329954 32330100 -150085142 - L2 LINE L2 -836 2478 2325 692 316 117 7 chr6 32331351 32331788 -150083454 - L2 LINE L2 -1009 2305 1821 231 36 0 0 chr6 32331927 32331955 -150083287 + (TA)n Simple_repeat Simple_repeat 2 29 0 27 73 0 0 chr6 32332052 32332107 -150083135 + AT_rich Low_complexity Low_complexity 1 55 0 390 264 64 123 chr6 32332114 32332584 -150082658 + HAL1 LINE L1 1104 1545 -962 3102 117 29 22 chr6 32332595 32333084 -150082158 + L1MA3 LINE L1 5814 6305 0 266 279 27 18 chr6 32333100 32333211 -150082031 + HAL1 LINE L1 1529 1640 -867 329 185 0 12 chr6 32333397 32333438 -150081804 + GA-rich Low_complexity Low_complexity 5 46 -38 1259 198 23 43 chr6 32333438 32333741 -150081501 + AluJb SINE Alu 1 297 -5 329 185 0 12 chr6 32333741 32333780 -150081462 + GA-rich Low_complexity Low_complexity 46 84 0 206 315 0 0 chr6 32333999 32334081 -150081161 + A-rich Low_complexity Low_complexity 1 85 -7 2698 0 0 0 chr6 32334081 32334364 -150080878 - AluYa5 SINE Alu -12 299 17 26 82 0 0 chr6 32334475 32334536 -150080706 + AT_rich Low_complexity Low_complexity 1 61 0 2152 132 3 0 chr6 32334622 32334917 -150080325 + AluSq SINE Alu 1 296 -17 309 273 99 55 chr6 32335227 32335733 -150079509 + L1M4 LINE L1 2739 3266 -2880 213 121 0 0 chr6 32335940 32335973 -150079269 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 1009 219 46 63 chr6 32336130 32336481 -150078761 - MER87 LTR ERV1 -1 540 196 1601 96 0 0 chr6 32336900 32337098 -150078144 + AluSx SINE Alu 1 198 -114 4541 72 49 8 chr6 32337098 32337708 -150077534 - PABL_A LTR ERV1 -25 635 1 325 133 27 0 chr6 32338483 32338558 -150076684 + CT-rich Low_complexity Low_complexity 2 78 0 1144 207 53 53 chr6 32339046 32339476 -150075766 + L1M4 LINE L1 2162 2591 -3555 916 289 72 38 chr6 32339476 32339852 -150075390 - L2 LINE L2 -303 3010 2623 1979 155 3 7 chr6 32340217 32340521 -150074721 - AluJo SINE Alu -9 303 1 1154 192 104 0 chr6 32340521 32340696 -150074546 - MER58B DNA MER1_type -2118 302 92 279 0 0 0 chr6 32340696 32340727 -150074515 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1154 192 104 0 chr6 32340727 32340794 -150074448 - MER58B DNA MER1_type -2328 92 33 1669 149 35 24 chr6 32340961 32341249 -150073993 - AluJo SINE Alu -16 296 6 1890 133 17 23 chr6 32341356 32341656 -150073586 + AluJb SINE Alu 1 298 -14 938 135 0 0 chr6 32342922 32343048 -150072194 - FLAM_C SINE Alu -7 126 1 636 283 74 13 chr6 32343358 32343588 -150071654 - MIR SINE MIR -16 246 3 2290 94 0 13 chr6 32344089 32344388 -150070854 - AluSq SINE Alu -18 295 1 180 0 0 0 chr6 32344825 32344845 -150070397 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 24 32 0 0 chr6 32345608 32345639 -150069603 + AT_rich Low_complexity Low_complexity 1 31 0 949 101 7 50 chr6 32346022 32346161 -150069081 + AluJ SINE Alu 1 133 -169 2248 112 0 0 chr6 32346637 32346940 -150068302 + AluSx SINE Alu 1 303 -9 789 215 57 0 chr6 32346941 32347099 -150068143 + AluJ SINE Alu 134 300 -12 439 139 38 13 chr6 32347099 32347178 -150068064 + MER5B DNA MER1_type 96 176 -2 2209 82 0 7 chr6 32347591 32347905 -150067337 + AluSg SINE Alu 1 312 0 2033 97 3 7 chr6 32350282 32350571 -150064671 + AluSx SINE Alu 1 288 -24 2299 99 3 0 chr6 32350607 32350909 -150064333 + AluY SINE Alu 1 303 -8 817 150 17 0 chr6 32351044 32351164 -150064078 + AluJb SINE Alu 176 297 -15 440 241 247 0 chr6 32351347 32351509 -150063733 + MIR SINE MIR 61 262 0 2206 140 33 9 chr6 32351683 32352012 -150063230 - MER1B DNA MER1_type 0 337 1 373 130 19 0 chr6 32352385 32352439 -150062803 + L2 LINE L2 3246 3300 -13 2089 144 0 0 chr6 32353145 32353457 -150061785 + AluSx SINE Alu 1 312 0 294 273 39 0 chr6 32353569 32353646 -150061596 + L1MC4 LINE L1 7403 7482 -560 1044 68 0 8 chr6 32353647 32353780 -150061462 + AluSq/x SINE Alu 1 132 -180 1988 92 21 4 chr6 32353782 32354063 -150061179 + AluSq SINE Alu 1 286 -27 362 221 142 0 chr6 32354074 32354187 -150061055 + L1MC4 LINE L1 7610 7738 -304 496 218 6 51 chr6 32354248 32354364 -150060878 + L1MC4 LINE L1 7894 8003 -39 1776 125 40 15 chr6 32354364 32354636 -150060606 - AluJb SINE Alu -14 298 20 496 218 6 51 chr6 32354636 32354675 -150060567 + L1MC4 LINE L1 8003 8042 0 2217 111 7 0 chr6 32354688 32354986 -150060256 - AluSx SINE Alu -12 300 1 947 121 29 40 chr6 32354986 32355160 -150060082 + L1MB3 LINE L1 6011 6182 -1 965 251 183 16 chr6 32355167 32355629 -150059613 + L2 LINE L2 2771 3303 -10 654 191 72 7 chr6 32355827 32355979 -150059263 + L1MD3 LINE L1 7832 7993 -2 220 250 29 0 chr6 32356599 32356627 -150058615 + (TAA)n Simple_repeat Simple_repeat 3 29 -43 1969 123 32 0 chr6 32356627 32356904 -150058338 + AluSx SINE Alu 1 286 -26 220 250 29 0 chr6 32356904 32356943 -150058299 + (TAA)n Simple_repeat Simple_repeat 29 72 0 1878 137 14 17 chr6 32356947 32357240 -150058002 - AluSx SINE Alu -19 293 2 803 252 86 14 chr6 32357250 32357460 -150057782 - MIR SINE MIR -11 251 27 1293 203 18 0 chr6 32357464 32357681 -150057561 + MER58A DNA MER1_type 2 222 -2 2294 95 3 0 chr6 32357734 32358029 -150057213 + AluSx SINE Alu 1 296 -16 432 51 0 0 chr6 32358523 32358582 -150056660 + (CA)n Simple_repeat Simple_repeat 1 59 0 240 295 16 49 chr6 32358582 32358696 -150056546 - MIR SINE MIR -67 141 30 622 106 0 0 chr6 32360349 32360434 -150054808 - AluS SINE Alu -227 86 2 1786 60 0 38 chr6 32360939 32361174 -150054068 - AluY SINE Alu -6 305 80 517 151 0 0 chr6 32361469 32361542 -150053700 - tRNA-Ala-GCG tRNA tRNA -2 73 1 216 0 0 0 chr6 32361873 32361897 -150053345 + (CA)n Simple_repeat Simple_repeat 2 25 0 5720 170 13 31 chr6 32361990 32362312 -150052930 + L1MA10 LINE L1 4974 5300 -1034 243 0 0 0 chr6 32362312 32362339 -150052903 + (CA)n Simple_repeat Simple_repeat 1 27 0 5720 170 13 31 chr6 32362339 32363191 -150052051 + L1MA10 LINE L1 5300 6130 -204 2509 46 3 10 chr6 32363191 32363497 -150051745 + AluY SINE Alu 1 304 -7 5720 170 13 31 chr6 32363497 32363691 -150051551 + L1MA10 LINE L1 6130 6326 -8 663 146 0 146 chr6 32363852 32364016 -150051226 - FLAM_C SINE Alu -3 140 1 41 0 0 19 chr6 32365400 32365424 -150049818 + AT_rich Low_complexity Low_complexity 1 24 -27 2269 84 0 0 chr6 32365424 32365720 -150049522 - AluSx SINE Alu -16 296 1 41 0 0 19 chr6 32365720 32365747 -150049495 + AT_rich Low_complexity Low_complexity 24 51 0 1734 177 0 13 chr6 32365747 32366052 -150049190 + AluJo SINE Alu 1 301 -11 418 182 61 0 chr6 32366088 32366154 -150049088 + AluJ/FLAM SINE Alu 12 81 -231 2087 132 3 3 chr6 32366301 32366611 -150048631 - AluSx SINE Alu 0 312 3 2168 69 14 28 chr6 32366678 32366996 -150048246 + AluY SINE Alu 1 314 0 261 221 0 0 chr6 32367600 32367668 -150047574 + CT-rich Low_complexity Low_complexity 3 70 0 470 162 60 62 chr6 32367908 32368060 -150047182 - L1MC3 LINE L1 -1 7765 6193 2093 102 0 0 chr6 32368062 32368337 -150046905 + AluSx SINE Alu 2 276 -36 207 0 0 0 chr6 32368339 32368362 -150046880 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2585 58 0 6 chr6 32368364 32368677 -150046565 + AluSx SINE Alu 2 312 0 571 56 0 0 chr6 32368994 32369065 -150046177 - tRNA-Arg-CGA tRNA tRNA -5 71 1 1154 163 5 10 chr6 32369507 32369709 -150045533 + L1PA16 LINE L1 5966 6166 0 267 93 0 0 chr6 32370649 32370692 -150044550 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 301 200 0 0 chr6 32370693 32370743 -150044499 - MER66B LTR ERV1 -142 344 295 555 16 0 0 chr6 32371384 32371448 -150043794 + (TG)n Simple_repeat Simple_repeat 2 65 0 5504 124 52 19 chr6 32371546 32372033 -150043209 + L1MA3 LINE L1 5346 5816 -489 3730 65 135 68 chr6 32372033 32372605 -150042637 - LTR66 LTR ERVL 0 610 1 5504 124 52 19 chr6 32372605 32373047 -150042195 + L1MA3 LINE L1 5816 6305 0 607 82 0 0 chr6 32373792 32373865 -150041377 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2780 160 6 23 chr6 32373920 32374396 -150040846 + MER1A DNA MER1_type 62 529 0 3440 237 63 54 chr6 32374667 32375124 -150040118 + L1MDa LINE L1 1696 2147 -4393 2081 136 0 3 chr6 32375124 32375434 -150039808 + AluSg SINE Alu 1 309 -1 3440 237 63 54 chr6 32375434 32375668 -150039574 + L1MDa LINE L1 2147 2377 -4163 1501 84 21 0 chr6 32375668 32375859 -150039383 + AluSx SINE Alu 1 195 -117 3440 237 63 54 chr6 32375859 32376273 -150038969 + L1MDa LINE L1 2377 2786 -3754 2152 140 0 0 chr6 32376273 32376580 -150038662 - AluSq SINE Alu -6 307 1 3440 237 63 54 chr6 32376580 32377485 -150037757 + L1MDa LINE L1 2786 3733 -2807 1036 104 15 4 chr6 32377505 32377711 -150037531 + AluSq SINE Alu 2 284 -29 332 203 28 40 chr6 32378098 32378275 -150036967 + (TATAA)n Simple_repeat Simple_repeat 4 178 0 1556 247 57 52 chr6 32378311 32378343 -150036899 + L1MDa LINE L1 3722 3752 -2788 2877 83 193 43 chr6 32378343 32378450 -150036792 - LTR61 LTR ERV1 0 595 505 2232 106 10 0 chr6 32378450 32378753 -150036489 + AluSx SINE Alu 1 306 -6 2877 83 193 43 chr6 32378753 32379162 -150036080 - LTR61 LTR ERV1 -90 505 1 1556 247 57 52 chr6 32379162 32379331 -150035911 + L1MDa LINE L1 3752 3919 -2621 2304 99 0 0 chr6 32379331 32379625 -150035617 + AluSq SINE Alu 1 294 -19 1556 247 57 52 chr6 32379625 32379683 -150035559 + L1MDa LINE L1 3919 3975 -2565 1989 60 108 4 chr6 32379683 32379951 -150035291 + AluY SINE Alu 1 296 -15 1556 247 57 52 chr6 32379951 32380344 -150034898 + L1MDa LINE L1 3975 4379 -2161 1708 127 48 65 chr6 32380375 32380427 -150034815 - THE1C LTR MaLR 0 375 324 2155 113 0 0 chr6 32380427 32380720 -150034522 - AluSg SINE Alu -15 295 3 1708 127 48 65 chr6 32380720 32381021 -150034221 - THE1C LTR MaLR -51 324 19 559 237 290 15 chr6 32381087 32381349 -150033893 + L1M4 LINE L1 4751 5084 -1062 2033 117 29 0 chr6 32381551 32381995 -150033247 + AluSx SINE Alu 1 452 0 533 177 14 99 chr6 32382313 32382340 -150032902 - MER5A DNA MER1_type 0 189 161 2274 92 3 0 chr6 32382340 32382635 -150032607 + AluSg SINE Alu 1 296 -14 533 177 14 99 chr6 32382635 32382748 -150032494 - MER5A DNA MER1_type -28 161 61 2303 88 3 0 chr6 32383441 32383735 -150031507 - AluSp SINE Alu -16 297 3 21 0 0 0 chr6 32384066 32384087 -150031155 + GC_rich Low_complexity Low_complexity 1 21 0 561 69 0 0 chr6 32384421 32384493 -150030749 - tRNA-Ala-GCG tRNA tRNA -3 72 1 989 183 6 0 chr6 32384983 32385158 -150030084 + FRAM SINE Alu 1 173 -3 2207 101 3 14 chr6 32385588 32385906 -150029336 + AluSq SINE Alu 1 313 0 736 209 32 102 chr6 32386676 32386790 -150028452 + MER33 DNA MER1_type 1 111 -2474 2315 106 0 0 chr6 32386790 32387092 -150028150 + AluSg SINE Alu 1 302 -8 204 97 0 0 chr6 32387092 32387123 -150028119 + (TA)n Simple_repeat Simple_repeat 1 31 0 736 209 32 102 chr6 32387123 32387254 -150027988 + MER33 DNA MER1_type 110 208 -2377 1163 133 9 64 chr6 32387254 32387472 -150027770 + L1PA16 LINE L1 5952 6157 -9 736 209 32 102 chr6 32387472 32387577 -150027665 + MER33 DNA MER1_type 208 319 -5 1359 166 7 83 chr6 32388448 32388749 -150026493 + AluJb SINE Alu 1 278 -34 807 42 42 0 chr6 32388753 32388871 -150026371 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 2096 108 3 3 chr6 32389165 32389452 -150025790 + AluSx SINE Alu 1 287 -25 548 82 0 14 chr6 32389650 32389723 -150025519 - tRNA-Phe-TTC tRNA tRNA -4 72 1 1267 93 11 11 chr6 32389823 32390005 -150025237 + AluSg/x SINE Alu 122 303 -7 669 138 0 204 chr6 32390113 32390338 -150024904 - AluSg/x SINE Alu -10 300 122 607 29 0 0 chr6 32390439 32390508 -150024734 + tRNA-Phe-TTC tRNA tRNA 1 69 -7 2302 106 0 0 chr6 32391174 32391486 -150023756 + AluSx SINE Alu 1 312 0 3660 126 30 4 chr6 32392231 32392773 -150022469 - LTR6A LTR ERV1 0 564 9 60739 135 10 10 chr6 32392783 32400002 -150015240 - HERVS71 LTR ERV1 -41 8937 1719 2467 58 10 0 chr6 32400002 32400294 -150014948 + AluY SINE Alu 1 295 -16 60739 135 10 10 chr6 32400294 32402010 -150013232 - HERVS71 LTR ERV1 -7259 1719 4 3671 122 28 4 chr6 32402012 32402555 -150012687 - LTR6A LTR ERV1 0 564 9 24 0 0 0 chr6 32403749 32403773 -150011469 + AT_rich Low_complexity Low_complexity 1 24 0 2394 106 0 0 chr6 32403800 32404160 -150011082 + AluY SINE Alu 1 360 0 326 288 0 0 chr6 32404824 32404897 -150010345 - tRNA-Ala-GCG tRNA tRNA -2 73 1 531 0 0 0 chr6 32405024 32405083 -150010159 + (TC)n Simple_repeat Simple_repeat 1 59 0 3233 238 101 40 chr6 32405272 32406139 -150009103 + L1MC4 LINE L1 6098 7031 -777 2479 66 0 0 chr6 32406139 32406442 -150008800 + AluY SINE Alu 2 304 -7 3233 238 101 40 chr6 32406442 32407158 -150008084 + L1MC4 LINE L1 7031 7702 -106 253 291 12 12 chr6 32407510 32407596 -150007646 + GA-rich Low_complexity Low_complexity 4 89 0 2505 55 3 3 chr6 32407734 32408043 -150007199 + AluY SINE Alu 1 309 -2 754 219 0 64 chr6 32408314 32408591 -150006651 + FAM SINE Alu 1 129 0 502 259 199 19 chr6 32408602 32408870 -150006372 + L1M4 LINE L1 2183 2401 -3745 1984 97 3 45 chr6 32408870 32409182 -150006060 + AluSc SINE Alu 1 300 0 2108 91 3 47 chr6 32409190 32409475 -150005767 + AluSx SINE Alu 5 276 -36 257 50 0 25 chr6 32409475 32409515 -150005727 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 2108 91 3 47 chr6 32409515 32409548 -150005694 + AluSx SINE Alu 276 309 -3 502 259 199 19 chr6 32409548 32409590 -150005652 + L1M4 LINE L1 2406 2561 -3585 2154 64 4 0 chr6 32410065 32410330 -150004912 - AluY SINE Alu -42 269 4 1047 245 62 28 chr6 32410338 32410807 -150004435 + L1M4 LINE L1 2557 3041 -3105 675 84 11 0 chr6 32410810 32410905 -150004337 + AluSg1 SINE Alu 2 97 -212 315 0 0 0 chr6 32410905 32410940 -150004302 + (A)n Simple_repeat Simple_repeat 1 35 0 1000 264 68 32 chr6 32410941 32411437 -150003805 + L1M4 LINE L1 3028 3541 -2605 2160 99 0 0 chr6 32411473 32411746 -150003496 - AluSx SINE Alu -31 281 9 1529 105 37 131 chr6 32413162 32413513 -150001729 - AluYb8 SINE Alu 0 318 1 534 180 57 8 chr6 32413994 32414116 -150001126 - MER5A DNA MER1_type 0 189 62 211 216 0 0 chr6 32415108 32415159 -150000083 + A-rich Low_complexity Low_complexity 1 51 0 2175 106 30 0 chr6 32415163 32415464 -149999778 + AluSx SINE Alu 2 311 -1 582 56 0 0 chr6 32415829 32415901 -149999341 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1084 74 14 0 chr6 32416049 32416197 -149999045 + AluSq SINE Alu 148 297 -16 276 30 0 0 chr6 32416305 32416338 -149998904 + (TG)n Simple_repeat Simple_repeat 2 34 0 2440 60 13 0 chr6 32416428 32416730 -149998512 + AluSp SINE Alu 1 306 -7 679 0 0 0 chr6 32416781 32416854 -149998388 - tRNA-Phe-TTC tRNA tRNA -3 73 1 1377 268 99 41 chr6 32417908 32418142 -149997100 + L1ME3 LINE L1 5186 5405 -757 1740 158 24 3 chr6 32418142 32418433 -149996809 + AluSx SINE Alu 2 298 -14 1377 268 99 41 chr6 32418433 32418585 -149996657 + L1ME3 LINE L1 5405 5547 -615 396 0 0 0 chr6 32418585 32418629 -149996613 + (TA)n Simple_repeat Simple_repeat 2 45 0 1377 268 99 41 chr6 32418629 32418876 -149996366 + L1ME3 LINE L1 5547 5778 -384 2431 93 0 0 chr6 32418876 32419186 -149996056 + AluY SINE Alu 1 310 -1 1377 268 99 41 chr6 32419186 32419252 -149995990 + L1ME3 LINE L1 5778 5839 -323 817 179 153 85 chr6 32419252 32419528 -149995714 + MLT1A1 LTR MaLR 1 257 -108 2058 120 0 7 chr6 32419528 32419811 -149995431 + AluSq SINE Alu 1 281 -32 300 27 0 0 chr6 32419812 32419849 -149995393 + (GGGAA)n Simple_repeat Simple_repeat 2 38 0 817 179 153 85 chr6 32419849 32419910 -149995332 + MLT1A1 LTR MaLR 256 363 -2 1377 268 99 41 chr6 32419910 32420061 -149995181 + L1ME3 LINE L1 5839 6075 -87 180 0 0 0 chr6 32420195 32420215 -149995027 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 471 153 0 0 chr6 32422019 32422091 -149993151 - tRNA-Ala-GCG tRNA tRNA -3 72 1 2287 88 24 0 chr6 32422250 32422627 -149992615 + AluSg1 SINE Alu 1 384 0 823 237 122 101 chr6 32422785 32422929 -149992313 + L1MC4a LINE L1 6098 6238 -1570 326 0 0 0 chr6 32422929 32422964 -149992278 + U2 snRNA snRNA 1 35 -153 823 237 122 101 chr6 32422964 32423293 -149991949 + L1MC4a LINE L1 6238 6623 -1185 2114 127 13 3 chr6 32423293 32423592 -149991650 + AluSx SINE Alu 1 302 -10 823 237 122 101 chr6 32423592 32423725 -149991517 + L1MC4a LINE L1 6623 6752 -1056 406 129 0 0 chr6 32423754 32423816 -149991426 + Alu SINE Alu 236 297 -15 2302 232 66 34 chr6 32423816 32424604 -149990638 + L1MC4 LINE L1 7089 7901 -141 281 67 0 22 chr6 32424634 32424679 -149990563 + (TA)n Simple_repeat Simple_repeat 2 45 0 305 228 11 33 chr6 32424686 32424778 -149990464 + L1MC4 LINE L1 6614 6703 -1339 307 215 21 43 chr6 32424780 32424873 -149990369 + L1MC4 LINE L1 6613 6703 -1339 440 93 0 41 chr6 32424879 32424976 -149990266 + (TA)n Simple_repeat Simple_repeat 2 94 0 2151 244 51 32 chr6 32425334 32425517 -149989725 + L1M4 LINE L1 2429 2607 -3539 2501 51 0 7 chr6 32425517 32425812 -149989430 + AluY SINE Alu 1 293 -18 2151 244 51 32 chr6 32425812 32426364 -149988878 + L1M4 LINE L1 2607 3186 -2960 186 43 0 0 chr6 32426364 32426387 -149988855 + (CA)n Simple_repeat Simple_repeat 2 24 0 2151 244 51 32 chr6 32426387 32426545 -149988697 + L1M4 LINE L1 3186 3340 -2806 2136 117 3 0 chr6 32426549 32426867 -149988375 + AluSx SINE Alu 1 319 0 546 198 50 8 chr6 32427034 32427155 -149988087 - MER5A DNA MER1_type 0 189 64 2270 67 7 7 chr6 32428243 32428571 -149986671 + AluSq SINE Alu 1 328 0 539 70 14 0 chr6 32428849 32428920 -149986322 - tRNA-Ala-GCG tRNA tRNA -3 72 1 591 235 29 0 chr6 32429401 32429537 -149985705 + FRAM SINE Alu 1 137 -39 207 0 0 0 chr6 32429538 32429561 -149985681 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 458 174 20 0 chr6 32429574 32429672 -149985570 + GA-rich Low_complexity Low_complexity 2 101 0 225 254 0 0 chr6 32430454 32430509 -149984733 + (TG)n Simple_repeat Simple_repeat 2 56 0 847 167 72 85 chr6 32430893 32431115 -149984127 + MER33 DNA MER1_type 1 214 -2371 1160 144 25 5 chr6 32431115 32431317 -149983925 + L1PA16 LINE L1 5952 6157 -9 847 167 72 85 chr6 32431317 32431338 -149983904 + MER33 DNA MER1_type 214 234 -2351 2502 53 3 25 chr6 32431338 32431474 -149983768 + AluSp SINE Alu 1 138 -175 2274 55 31 3 chr6 32431474 32431763 -149983479 + AluY SINE Alu 1 297 -14 2502 53 3 25 chr6 32431763 32431944 -149983298 + AluSp SINE Alu 138 311 -2 847 167 72 85 chr6 32431944 32432019 -149983223 + MER33 DNA MER1_type 234 302 -22 1312 151 43 108 chr6 32432962 32433287 -149981955 + AluJb SINE Alu 1 304 -8 216 163 0 0 chr6 32433640 32433683 -149981559 + (TA)n Simple_repeat Simple_repeat 1 43 0 315 0 0 0 chr6 32433685 32433720 -149981522 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 118 0 0 chr6 32433755 32433789 -149981453 + (A)n Simple_repeat Simple_repeat 1 34 0 647 27 0 0 chr6 32433882 32433955 -149981287 - tRNA-Phe-TTC tRNA tRNA -3 73 1 1679 112 97 12 chr6 32434497 32434789 -149980453 - AluSg SINE Alu 0 314 1 1986 94 63 18 chr6 32434854 32435140 -149980102 + AluSx SINE Alu 1 299 -13 468 195 71 0 chr6 32435178 32435291 -149979951 - AluSc SINE Alu -12 297 177 2310 81 0 0 chr6 32435561 32435844 -149979398 + AluSq SINE Alu 1 283 -30 33 0 0 0 chr6 32435883 32435916 -149979326 + AT_rich Low_complexity Low_complexity 1 33 0 432 194 0 0 chr6 32438121 32438193 -149977049 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1278 244 144 59 chr6 32438501 32438956 -149976286 + L1MC4a LINE L1 6098 6636 -1172 1950 128 21 0 chr6 32438956 32439244 -149975998 + AluSx SINE Alu 1 294 -18 1278 244 144 59 chr6 32439244 32439496 -149975746 + L1MC4a LINE L1 6636 6865 -943 2087 112 3 0 chr6 32439498 32439793 -149975449 + AluSx SINE Alu 8 303 -9 454 231 0 8 chr6 32439853 32439972 -149975270 + L1MC4 LINE L1 7915 8042 0 468 216 43 35 chr6 32441767 32441883 -149973359 - MER5A DNA MER1_type 0 189 73 575 69 0 0 chr6 32443284 32443356 -149971886 - tRNA-Ala-GCG tRNA tRNA -3 72 1 781 173 7 0 chr6 32443837 32443976 -149971266 + FRAM SINE Alu 1 137 -39 383 123 0 27 chr6 32443976 32444049 -149971193 + (GGGGA)n Simple_repeat Simple_repeat 5 75 0 778 178 35 96 chr6 32445200 32445327 -149969915 + MER33 DNA MER1_type 1 123 -2501 1827 127 13 47 chr6 32445327 32445627 -149969615 - AluSg SINE Alu -20 290 1 778 178 35 96 chr6 32445627 32445739 -149969503 + MER33 DNA MER1_type 123 240 -2384 1314 109 20 5 chr6 32445739 32445941 -149969301 + L1PA16 LINE L1 5952 6156 -10 1939 143 0 0 chr6 32445941 32446244 -149968998 - AluSx SINE Alu 0 308 6 778 178 35 96 chr6 32446244 32446363 -149968879 + MER33 DNA MER1_type 238 352 -11 2252 118 3 0 chr6 32446752 32446926 -149968316 - AluSq SINE Alu -7 306 129 321 26 0 0 chr6 32446926 32446964 -149968278 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2252 118 3 0 chr6 32446964 32447094 -149968148 - AluSq SINE Alu -184 129 1 195 114 0 0 chr6 32447375 32447410 -149967832 + (A)n Simple_repeat Simple_repeat 1 35 0 2214 133 0 0 chr6 32447535 32447843 -149967399 + AluSg SINE Alu 1 308 -2 1569 161 7 56 chr6 32447977 32448281 -149966961 + AluJb SINE Alu 6 294 -18 2460 58 3 0 chr6 32448284 32448576 -149966666 + AluY SINE Alu 1 293 -18 2280 58 41 7 chr6 32448638 32448930 -149966312 - AluY SINE Alu -9 302 1 203 133 0 0 chr6 32449222 32449252 -149965990 + (CATA)n Simple_repeat Simple_repeat 2 31 0 619 27 0 14 chr6 32449365 32449439 -149965803 - tRNA-Phe-TTC tRNA tRNA -3 73 1 2259 105 7 0 chr6 32449653 32449957 -149965285 + AluSx SINE Alu 1 306 -6 561 145 30 6 chr6 32450334 32450500 -149964742 + (TA)n Simple_repeat Simple_repeat 1 170 0 205 61 20 61 chr6 32450499 32450548 -149964694 + (GA)n Simple_repeat Simple_repeat 2 48 0 * 433 186 62 0 chr6 32450548 32450645 -149964597 - AluSc SINE Alu -30 279 177 2109 117 3 3 chr6 32452832 32453144 -149962098 + AluSp SINE Alu 1 312 0 308 278 0 0 chr6 32453468 32453540 -149961702 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1506 258 154 40 chr6 32453763 32454537 -149960705 + L1MC4a LINE L1 6234 7095 -713 532 72 0 4 chr6 32454537 32454759 -149960483 + AluSp SINE Alu 1 309 0 1526 221 110 27 chr6 32454760 32455249 -149959993 + L1MC4 LINE L1 7389 7918 -124 204 40 0 0 chr6 32455254 32455279 -149959963 + (CA)n Simple_repeat Simple_repeat 2 26 0 2098 123 3 3 chr6 32455458 32455759 -149959483 - AluSp SINE Alu -12 301 1 416 235 0 0 chr6 32455759 32455840 -149959402 - Tigger3(Golem) DNA MER2_type -2948 81 1 599 143 9 9 chr6 32455841 32455946 -149959296 + MLT1D LTR MaLR 398 502 -3 11850 51 0 38 chr6 32456034 32458299 -149956943 + L1PA6 LINE L1 3923 6154 0 2456 66 0 35 chr6 32458315 32458633 -149956609 + AluY SINE Alu 1 307 -4 21 36 0 0 chr6 32458889 32458917 -149956325 + AT_rich Low_complexity Low_complexity 1 28 0 2057 133 3 0 chr6 32458920 32459221 -149956021 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr6 32459261 32459289 -149955953 + AT_rich Low_complexity Low_complexity 1 28 0 2520 53 0 37 chr6 32460539 32460862 -149954380 + AluY SINE Alu 1 311 0 1281 116 0 0 chr6 32461677 32461850 -149953392 - AluSg/x SINE Alu -12 298 126 2349 76 20 3 chr6 32462895 32463196 -149952046 + AluSg SINE Alu 1 306 -4 301 234 224 0 chr6 32463431 32463538 -149951704 - MER5A DNA MER1_type -14 175 45 2168 66 40 23 chr6 32463876 32464177 -149951065 + AluY SINE Alu 1 306 -5 508 97 0 0 chr6 32464500 32464572 -149950670 - tRNA-Ala-GCG tRNA tRNA -3 72 1 515 293 137 35 chr6 32465576 32466620 -149948622 + L1MB2 LINE L1 2683 3832 -2314 1254 151 0 5 chr6 32466655 32466873 -149948369 + L1MA4A LINE L1 5852 6068 -235 1149 136 0 0 chr6 32466873 32467042 -149948200 - AluSg/x SINE Alu -7 303 135 1035 74 40 7 chr6 32467043 32467192 -149948050 + L1MA4A LINE L1 6070 6223 -80 841 278 64 40 chr6 32467211 32467414 -149947828 + L1MC/D LINE L1 5468 5665 -2143 1856 165 0 23 chr6 32467414 32467742 -149947500 + AluSx SINE Alu 1 312 0 841 278 64 40 chr6 32467742 32467800 -149947442 + L1MC/D LINE L1 5665 5720 -2088 1625 101 167 8 chr6 32467800 32468058 -149947184 + AluSc SINE Alu 1 299 0 841 278 64 40 chr6 32468058 32468141 -149947101 + L1MC/D LINE L1 5720 5821 -1987 1185 164 15 5 chr6 32468159 32468360 -149946882 + LTR48B LTR ERV1 442 644 0 1907 318 59 34 chr6 32468369 32468607 -149946635 + L1M4b LINE L1 469 700 -6159 2374 102 0 6 chr6 32468607 32468920 -149946322 + AluSx SINE Alu 1 311 -1 1907 318 59 34 chr6 32468920 32469440 -149945802 + L1M4b LINE L1 700 1246 -5613 6357 184 23 40 chr6 32469449 32469561 -149945681 + L1MB2 LINE L1 3851 3963 -2220 2341 86 0 10 chr6 32469561 32469875 -149945367 + AluY SINE Alu 1 311 0 6357 184 23 40 chr6 32469875 32470079 -149945163 + L1MB2 LINE L1 3963 4169 -2014 1662 164 17 7 chr6 32470079 32470378 -149944864 + AluJb SINE Alu 7 308 -4 6357 184 23 40 chr6 32470378 32471020 -149944222 + L1MB2 LINE L1 4169 4820 -1363 2149 107 0 27 chr6 32471020 32471318 -149943924 + AluSg SINE Alu 1 290 -20 6357 184 23 40 chr6 32471318 32472127 -149943115 + L1MB2 LINE L1 4820 5589 -594 225 94 0 0 chr6 32472133 32472165 -149943077 + (TA)n Simple_repeat Simple_repeat 1 32 0 3134 143 54 17 chr6 32472168 32472928 -149942314 + MER21A LTR ERV1 20 931 0 2819 168 40 18 chr6 32472932 32473487 -149941755 + L1MB2 LINE L1 5587 6153 -18 1879 137 20 7 chr6 32473537 32473829 -149941413 + AluSx SINE Alu 1 296 -16 878 263 57 9 chr6 32473833 32474183 -149941059 + L1 LINE L1 2945 3311 -2835 1873 142 59 0 chr6 32474187 32474475 -149940767 + AluSg SINE Alu 5 309 -1 40294 76 5 9 chr6 32474509 32475964 -149939278 + L1PA5 LINE L1 12 1470 -4684 2538 68 0 0 chr6 32475964 32476274 -149938968 + AluY SINE Alu 1 310 -1 40294 76 5 9 chr6 32476274 32480980 -149934262 + L1PA5 LINE L1 1470 6152 -2 2128 128 0 3 chr6 32481071 32481367 -149933875 - AluSx SINE Alu -17 295 1 380 118 11 0 chr6 32481318 32481383 -149933859 - Alu SINE Alu -254 49 1 459 271 53 79 chr6 32481722 32481869 -149933373 - L1MEd LINE L1 -4929 1190 1041 2213 112 3 0 chr6 32481869 32482163 -149933079 - AluY SINE Alu -15 296 2 459 271 53 79 chr6 32482163 32482469 -149932773 - L1MEd LINE L1 -5078 1041 749 403 71 24 36 chr6 32482470 32482554 -149932688 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 323 322 86 39 chr6 32482557 32482790 -149932452 - L1MEd LINE L1 -5359 760 517 2734 125 7 40 chr6 32483287 32483566 -149931676 + MER57B LTR ERV1 1 261 -173 2200 95 0 33 chr6 32483566 32483872 -149931370 - AluSg SINE Alu -14 296 1 2734 125 7 40 chr6 32483872 32484041 -149931201 + MER57B LTR ERV1 261 434 0 2419 70 7 0 chr6 32484200 32484498 -149930744 + AluSp SINE Alu 1 300 -13 24 0 0 0 chr6 32485056 32485080 -149930162 + AT_rich Low_complexity Low_complexity 1 24 0 1755 186 32 6 chr6 32485178 32485517 -149929725 - MER7A DNA MER2_type 0 346 1 566 197 17 26 chr6 32486297 32486414 -149928828 + MER3 DNA MER1_type 2 117 -92 3823 132 60 50 chr6 32486631 32487315 -149927927 + LTR8 LTR ERV1 1 691 0 535 153 0 0 chr6 32488176 32488261 -149926981 + MER50 LTR ERV1 145 229 -505 * 1438 162 18 42 chr6 32488255 32488539 -149926703 + MER50 LTR ERV1 433 709 -25 1981 102 0 62 chr6 32488826 32489148 -149926094 + AluSx SINE Alu 1 302 -10 508 97 0 0 chr6 32489741 32489813 -149925429 - tRNA-Ala-GCG tRNA tRNA -3 72 1 858 221 75 29 chr6 32490954 32491192 -149924050 + MER39 LTR ERV1 288 536 -171 1398 177 108 23 chr6 32491192 32491543 -149923699 - MER6 DNA MER2_type -1 864 484 7320 151 150 30 chr6 32491547 32493060 -149922182 - pTR5 LTR ERV1 0 2438 744 1299 213 28 32 chr6 32493060 32493288 -149921954 - MER6 DNA MER2_type -392 473 246 180 77 0 0 chr6 32493288 32493314 -149921928 + (CA)n Simple_repeat Simple_repeat 1 26 0 1299 213 28 32 chr6 32493314 32493506 -149921736 - MER6 DNA MER2_type -619 246 1 533 239 43 25 chr6 32493511 32493589 -149921653 + MER39 LTR ERV1 537 612 -95 2362 103 3 3 chr6 32493589 32493899 -149921343 - AluSp SINE Alu -3 310 1 533 239 43 25 chr6 32493899 32493983 -149921259 + MER39 LTR ERV1 612 702 -5 247 143 0 0 chr6 32494147 32494182 -149921060 - 7SK RNA RNA -158 35 1 205 281 0 0 chr6 32494193 32494250 -149920992 + MER5B DNA MER1_type 122 178 0 2496 126 62 3 chr6 32494329 32494717 -149920525 - LTR57 LTR ERVL 0 411 1 9017 135 20 20 chr6 32494717 32495378 -149919864 - LTR57-int LTR ERVL 0 5343 4683 2482 70 0 7 chr6 32495378 32495679 -149919563 - AluY SINE Alu -12 299 1 9017 135 20 20 chr6 32495679 32496351 -149918891 - LTR57-int LTR ERVL -660 4683 4007 2317 113 0 0 chr6 32496351 32496652 -149918590 - AluSx SINE Alu -11 301 1 9017 135 20 20 chr6 32496652 32496690 -149918552 - LTR57-int LTR ERVL -1335 4008 3971 788 153 0 0 chr6 32496678 32496796 -149918446 - LTR57-int LTR ERVL -2176 3167 3050 * 7614 128 36 11 chr6 32496787 32497924 -149917318 - LTR57-int LTR ERVL -2573 2770 1605 4064 175 31 68 chr6 32497934 32499210 -149916032 - pTR5 LTR ERV1 -143 2295 746 10238 109 28 35 chr6 32499210 32500005 -149915237 - LTR57-int LTR ERVL -3734 1609 810 2241 115 0 3 chr6 32500005 32500317 -149914925 + AluSq SINE Alu 1 311 -2 10238 109 28 35 chr6 32500317 32500623 -149914619 - LTR57-int LTR ERVL -4533 810 503 2622 60 33 0 chr6 32500623 32500956 -149914286 - LTR14A LTR ERVK 0 344 1 1934 97 86 0 chr6 32500964 32501233 -149914009 + AluSg SINE Alu 1 292 -18 10238 109 28 35 chr6 32501233 32501741 -149913501 - LTR57-int LTR ERVL -4847 496 1 2517 134 32 29 chr6 32501741 32501926 -149913316 - LTR57 LTR ERVL 0 411 228 2038 121 13 0 chr6 32501926 32502224 -149913018 - AluSx SINE Alu -10 302 1 2517 134 32 29 chr6 32502224 32502447 -149912795 - LTR57 LTR ERVL -183 228 2 675 225 67 11 chr6 32502644 32502822 -149912420 - MER5A DNA MER1_type 0 189 2 2255 95 0 52 chr6 32503416 32503742 -149911500 + AluSq SINE Alu 1 309 -4 189 0 0 0 chr6 32504033 32504054 -149911188 + (CA)n Simple_repeat Simple_repeat 2 22 0 470 105 13 13 chr6 32504243 32504319 -149910923 + AluJ/FRAM SINE Alu 226 301 -11 312 260 42 0 chr6 32505467 32505563 -149909679 - L1ME4a LINE L1 -199 5922 5823 1861 115 25 7 chr6 32505648 32505926 -149909316 + AluJb SINE Alu 5 287 -25 2033 117 16 13 chr6 32505934 32506242 -149909000 + AluSx SINE Alu 1 309 -3 578 56 0 0 chr6 32507444 32507515 -149907727 + tRNA-Arg-CGA tRNA tRNA 1 71 -5 229 294 56 24 chr6 32507619 32507745 -149907497 - L2 LINE L2 -18 3295 3166 272 252 107 29 chr6 32508577 32508680 -149906562 - MIR SINE MIR -93 169 59 2320 72 0 33 chr6 32508801 32509105 -149906137 - AluSc SINE Alu -15 294 1 1257 159 4 53 chr6 32509140 32509367 -149905875 - AluJo SINE Alu -83 229 14 2539 202 46 70 chr6 32509377 32510234 -149905008 - L1MB4 LINE L1 -216 5964 5133 584 185 74 0 chr6 32510238 32510346 -149904896 - AluSg/x SINE Alu -18 294 179 3726 193 68 19 chr6 32510347 32511462 -149903780 - pTR5 LTR ERV1 -1 2605 1524 5314 139 48 53 chr6 32511467 32512487 -149902755 + pTR5 LTR ERV1 1419 2433 -5 1887 112 73 21 chr6 32512799 32513086 -149902156 + AluY SINE Alu 1 302 -9 2173 87 30 7 chr6 32513188 32513487 -149901755 + AluSg SINE Alu 1 306 -4 1915 139 13 28 chr6 32514166 32514483 -149900759 - AluJb SINE Alu 0 312 1 1649 172 27 30 chr6 32516016 32516313 -149898929 + AluJb SINE Alu 3 298 -14 355 289 191 3 chr6 32516457 32516640 -149898602 + MIR SINE MIR 49 262 0 2471 61 3 0 chr6 32517249 32517544 -149897698 + AluY SINE Alu 1 296 -15 1753 106 24 0 chr6 32517632 32517878 -149897364 + AluSx SINE Alu 1 252 -60 288 0 0 0 chr6 32517881 32517913 -149897329 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1665 126 0 8 chr6 32517925 32518164 -149897078 - AluSx SINE Alu -44 268 32 639 143 0 19 chr6 32518265 32518358 -149896884 + FRAM SINE Alu 57 149 -163 270 0 0 0 chr6 32518358 32518388 -149896854 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 639 143 0 19 chr6 32518388 32518399 -149896843 + FRAM SINE Alu 149 159 -17 820 166 112 34 chr6 32518401 32518606 -149896636 + L1MB8 LINE L1 5957 6177 -1 1791 145 0 4 chr6 32519159 32519421 -149895821 + AluSx SINE Alu 32 292 -20 238 36 0 0 chr6 32519421 32519449 -149895793 + (GA)n Simple_repeat Simple_repeat 1 28 0 470 148 0 11 chr6 32519451 32519539 -149895703 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 572 137 0 11 chr6 32519617 32519712 -149895530 - AluJ/FLAM SINE Alu -217 95 2 532 194 46 51 chr6 32520299 32520441 -149894801 - MER87 LTR ERV1 -1 555 396 2432 99 0 0 chr6 32520469 32520781 -149894461 - AluSx SINE Alu 0 312 1 2281 70 3 34 chr6 32520792 32521133 -149894109 - AluY SINE Alu 0 332 1 2544 40 10 3 chr6 32521873 32522174 -149893068 - AluY SINE Alu -6 305 3 533 9 9 224 chr6 32522274 32522381 -149892861 - tRNA-Leu-TTG tRNA tRNA -2 84 1 180 0 0 0 chr6 32522624 32522644 -149892598 + (T)n Simple_repeat Simple_repeat 1 20 0 184 170 0 85 chr6 32523315 32523362 -149891880 + L2 LINE L2 3253 3295 -18 277 275 233 13 chr6 32523787 32524161 -149891081 - L1ME4a LINE L1 -49 6072 5617 2482 69 3 0 chr6 32524161 32524464 -149890778 - AluSg SINE Alu -6 304 1 1996 125 20 14 chr6 32524483 32524780 -149890462 - AluSx SINE Alu -12 300 2 2131 105 0 14 chr6 32525203 32525497 -149889745 - AluSg SINE Alu -20 290 1 2121 101 42 0 chr6 32525560 32525846 -149889396 - AluSx SINE Alu -12 300 3 25 75 0 0 chr6 32525893 32525946 -149889296 + AT_rich Low_complexity Low_complexity 1 53 0 268 262 62 41 chr6 32526185 32526330 -149888912 + L1MC5 LINE L1 7754 7901 -60 847 201 0 0 chr6 32526746 32526895 -149888347 + FRAM SINE Alu 1 146 -30 545 273 71 0 chr6 32528076 32528230 -149887012 + MIR SINE MIR 48 212 -50 2283 85 3 3 chr6 32528542 32528835 -149886407 + AluSg SINE Alu 1 293 -17 1623 191 18 7 chr6 32530983 32531261 -149883981 - AluJo SINE Alu -30 282 2 554 288 42 12 chr6 32531287 32531564 -149883678 - MER46C DNA MER2_type 0 338 1 648 201 167 14 chr6 32531605 32531749 -149883493 - FRAM SINE Alu 0 166 1 1475 151 97 32 chr6 32532001 32532279 -149882963 + AluJo SINE Alu 12 307 -5 29 0 0 0 chr6 32532279 32532308 -149882934 + AT_rich Low_complexity Low_complexity 1 29 0 240 227 61 83 chr6 32532516 32532648 -149882594 + L2 LINE L2 3185 3313 0 562 282 168 5 chr6 32534217 32534426 -149880816 - MIR SINE MIR -5 257 15 2309 65 10 0 chr6 32535165 32535459 -149879783 - AluSp SINE Alu -16 297 1 363 204 70 34 chr6 32535867 32535997 -149879245 + MLT1J LTR MaLR 1 173 -315 805 153 0 22 chr6 32536051 32536188 -149879054 + FLAM_C SINE Alu 10 143 0 454 294 101 55 chr6 32536240 32536377 -149878865 + MLT1J LTR MaLR 274 426 -85 2153 121 0 0 chr6 32536377 32536682 -149878560 - AluSx SINE Alu -7 305 1 454 294 101 55 chr6 32536682 32536762 -149878480 + MLT1J LTR MaLR 426 501 -10 309 159 79 0 chr6 32538096 32538159 -149877083 - L1MC4 LINE L1 0 8042 7975 2079 109 0 3 chr6 32538159 32538453 -149876789 - AluSq SINE Alu -11 302 10 232 88 0 0 chr6 32538459 32538493 -149876749 - L1MC4a LINE L1 -1869 5939 5906 327 87 0 0 chr6 32538515 32538561 -149876681 + AluSp/q SINE Alu 254 299 -4 685 264 43 22 chr6 32538561 32538837 -149876405 - L1MC4a LINE L1 -1893 5915 5634 686 211 33 17 chr6 32538846 32539026 -149876216 - L1MA4 LINE L1 -5 6295 6113 2368 67 3 0 chr6 32539026 32539323 -149875919 + AluSp SINE Alu 1 298 -15 251 157 20 0 chr6 32539323 32539374 -149875868 + (TA)n Simple_repeat Simple_repeat 1 52 0 631 150 53 0 chr6 32539374 32539507 -149875735 - L1MA4 LINE L1 -175 6125 5986 1128 245 50 18 chr6 32539548 32539887 -149875355 - L1MC4a LINE L1 -2204 5604 5255 746 124 0 0 chr6 32540076 32540181 -149875061 - FRAM SINE Alu -14 162 58 2113 114 3 0 chr6 32540190 32540487 -149874755 - AluSx SINE Alu -14 298 1 610 154 24 57 chr6 32540629 32540752 -149874490 + L1PB4 LINE L1 6000 6118 -38 238 282 36 49 chr6 32540806 32541190 -149874052 - L1MC4a LINE L1 -1617 4529 4034 222 37 0 0 chr6 32541346 32541373 -149873869 + (A)n Simple_repeat Simple_repeat 1 27 0 1979 119 20 10 chr6 32541379 32541672 -149873570 + AluSx SINE Alu 1 296 -16 557 192 29 0 chr6 32541693 32541797 -149873445 + U6 snRNA snRNA 1 107 0 1633 162 62 125 chr6 32541804 32541981 -149873261 + L1MB5 LINE L1 5694 5880 -294 2219 87 0 0 chr6 32541981 32542267 -149872975 - AluSg SINE Alu -24 286 1 1633 162 62 125 chr6 32542267 32542323 -149872919 + L1MB5 LINE L1 5880 5938 -236 2237 91 3 0 chr6 32542323 32542619 -149872623 + AluSp SINE Alu 1 297 -16 1633 162 62 125 chr6 32542619 32542897 -149872345 + L1MB5 LINE L1 5938 6174 0 1910 162 0 6 chr6 32542912 32543226 -149872016 + AluJb SINE Alu 1 312 0 241 341 49 0 chr6 32543237 32543319 -149871923 + L2 LINE L2 1101 1186 -2128 2209 109 0 0 chr6 32543349 32543652 -149871590 + AluSx SINE Alu 1 303 -9 2243 97 10 0 chr6 32543870 32544180 -149871062 - AluSp SINE Alu 0 313 1 436 342 68 9 chr6 32544347 32544569 -149870673 + L2 LINE L2 1760 1994 -1320 204 97 0 0 chr6 32544581 32544612 -149870630 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2199 96 0 0 chr6 32544650 32544942 -149870300 + AluSg SINE Alu 1 292 -18 291 181 250 0 chr6 32544960 32545032 -149870210 - MER58 DNA MER1_type -2330 90 1 2005 123 7 3 chr6 32545056 32545364 -149869878 - AluSg1 SINE Alu 0 309 1 247 320 64 0 chr6 32545446 32545524 -149869718 + L2 LINE L2 3189 3271 -1 421 333 12 19 chr6 32545679 32545841 -149869401 - MIR3 SINE MIR -6 202 42 1998 128 14 0 chr6 32547153 32547449 -149867793 + AluSp SINE Alu 1 300 -13 182 206 0 0 chr6 32548758 32548792 -149866450 - MIR SINE MIR -84 124 91 2127 88 10 3 chr6 32550351 32550656 -149864586 + AluSc SINE Alu 1 307 -2 350 210 50 20 chr6 32550865 32550965 -149864277 + MIR SINE MIR 57 159 -103 450 88 15 0 chr6 32551318 32551386 -149863856 - MER41B LTR ERV1 -87 548 480 360 250 167 0 chr6 32551393 32551477 -149863765 + MER115 DNA AcHobo 50 147 -546 1988 144 0 0 chr6 32551867 32552173 -149863069 + AluSx SINE Alu 1 306 -6 686 172 0 47 chr6 32552335 32552463 -149862779 - FLAM_C SINE Alu -11 122 1 2213 67 0 0 chr6 32552865 32553147 -149862095 + AluSg SINE Alu 6 287 -23 2413 44 0 10 chr6 32553166 32553463 -149861779 - AluY SINE Alu -17 294 1 2012 110 13 3 chr6 32553481 32553780 -149861462 + AluSx SINE Alu 1 302 -10 328 201 82 90 chr6 32553825 32553916 -149861326 + L2 LINE L2 1879 1970 -1344 2188 147 77 33 chr6 32553916 32554345 -149860897 + MER83 LTR ERV1 1 448 0 328 201 82 90 chr6 32554345 32554387 -149860855 + L2 LINE L2 1970 2011 -1303 1799 136 36 7 chr6 32554620 32554921 -149860321 + AluSx SINE Alu 3 312 0 602 277 138 64 chr6 32554964 32555419 -149859823 + L1MC4a LINE L1 4903 5391 -755 501 306 93 50 chr6 32555422 32555559 -149859683 + L1MC4a LINE L1 5438 5568 -2240 2175 113 3 0 chr6 32555559 32555870 -149859372 + AluSp SINE Alu 1 312 -1 501 306 93 50 chr6 32555870 32556108 -149859134 + L1MC4a LINE L1 5568 5829 -1979 692 122 0 9 chr6 32556110 32556225 -149859017 + (GAA)n Simple_repeat Simple_repeat 1 114 0 693 286 98 19 chr6 32556264 32556530 -149858712 - L2 LINE L2 0 3313 3027 3261 164 64 22 chr6 32556572 32556839 -149858403 + L1MD2 LINE L1 5639 5893 -466 1647 166 3 24 chr6 32556839 32557173 -149858069 - AluSx SINE Alu 0 328 1 3261 164 64 22 chr6 32557173 32557526 -149857716 + L1MD2 LINE L1 5893 6294 -65 1963 152 0 0 chr6 32557526 32557836 -149857406 - AluSx SINE Alu -2 310 1 3261 164 64 22 chr6 32557836 32557904 -149857338 + L1MD2 LINE L1 6294 6358 -1 281 238 29 48 chr6 32558001 32558106 -149857136 - MLT1L LTR MaLR -379 236 134 262 268 0 0 chr6 32558318 32558374 -149856868 - L2 LINE L2 -73 3199 3144 1086 138 0 6 chr6 32558467 32558627 -149856615 + FRAM SINE Alu 1 158 -18 2163 122 3 0 chr6 32558627 32558939 -149856303 + AluSp SINE Alu 1 313 0 362 302 20 27 chr6 32558949 32559098 -149856144 + MLT1H LTR MaLR 95 242 -307 1432 157 69 91 chr6 32559118 32559437 -149855805 - MLT1B LTR MaLR -2 388 77 1933 130 7 0 chr6 32559437 32559722 -149855520 + AluSx SINE Alu 8 294 -18 1432 157 69 91 chr6 32559722 32559777 -149855465 - MLT1B LTR MaLR -313 77 22 352 229 150 29 chr6 32559872 32560012 -149855230 + MLT1H LTR MaLR 298 454 -101 214 233 0 0 chr6 32560181 32560224 -149855018 + L3 LINE CR1 1179 1221 -356 1024 137 31 97 chr6 32560394 32560436 -149854806 - MSTA LTR MaLR 0 428 385 1950 125 0 14 chr6 32560436 32560750 -149854492 + AluSx SINE Alu 1 312 0 1024 137 31 97 chr6 32560750 32560864 -149854378 - MSTA LTR MaLR -43 385 289 2021 117 7 3 chr6 32560864 32561171 -149854071 - AluSq SINE Alu -5 308 1 1024 137 31 97 chr6 32561171 32561240 -149854002 - MSTA LTR MaLR -139 289 217 453 132 0 121 chr6 32561245 32561336 -149853906 - MSTA LTR MaLR -348 80 1 799 216 69 53 chr6 32561405 32561650 -149853592 - L1ME3 LINE L1 -4 6158 5910 1304 204 82 29 chr6 32561663 32562006 -149853236 - L1ME3 LINE L1 -418 5744 5384 1305 142 26 71 chr6 32562017 32562284 -149852958 - AluJb SINE Alu -57 255 1 718 243 39 24 chr6 32562284 32562460 -149852782 - L1ME3 LINE L1 -760 5386 5203 2246 88 13 10 chr6 32562460 32562768 -149852474 - AluSc SINE Alu 0 309 1 718 243 39 24 chr6 32562768 32562846 -149852396 - L1ME3 LINE L1 -943 5203 5128 884 155 0 19 chr6 32562876 32563037 -149852205 - FAM SINE Alu -15 170 13 397 299 103 0 chr6 32563040 32563254 -149851988 - L1ME3 LINE L1 -1011 5135 4900 1720 115 93 11 chr6 32563372 32563504 -149851738 - AluSx SINE Alu -21 291 171 1934 109 0 30 chr6 32563504 32563806 -149851436 - AluSc SINE Alu -16 293 1 1720 115 93 11 chr6 32563806 32563942 -149851300 - AluSx SINE Alu -141 171 1 1785 107 44 4 chr6 32564342 32564614 -149850628 - AluSq SINE Alu -30 283 1 747 240 83 47 chr6 32564642 32565621 -149849621 - HAL1 LINE L1 -342 2165 1061 2073 102 24 0 chr6 32565621 32565916 -149849326 + AluSp SINE Alu 1 302 -11 747 240 83 47 chr6 32565916 32566226 -149849016 - HAL1 LINE L1 -1446 1061 764 545 9 9 217 chr6 32567107 32567213 -149848029 + tRNA-Leu-TTG tRNA tRNA 1 84 -2 679 0 0 0 chr6 32567655 32567727 -149847515 - tRNA-Gln-CAG tRNA tRNA -3 72 1 357 93 0 0 chr6 32568279 32568333 -149846909 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 734 0 0 0 chr6 32569676 32569758 -149845484 - tRNA-Leu-CTT tRNA tRNA -3 82 1 524 83 0 0 chr6 32570630 32570702 -149844540 + tRNA-Met-e tRNA tRNA 1 72 -3 656 241 95 60 chr6 32571480 32571916 -149843326 + LTR50 LTR ERVL 10 655 -130 2183 100 0 0 chr6 32571944 32572235 -149843007 - AluSx SINE Alu -21 291 1 1297 275 28 38 chr6 32572265 32572735 -149842507 - L2 LINE L2 -55 3258 2791 243 317 32 73 chr6 32572808 32572861 -149842381 - MER5A DNA MER1_type -67 122 68 2104 102 7 0 chr6 32572861 32573156 -149842086 - AluSp SINE Alu -16 297 1 243 317 32 73 chr6 32573156 32573225 -149842017 - MER5A DNA MER1_type -121 68 5 1875 151 0 3 chr6 32573457 32573761 -149841481 - AluSx SINE Alu 0 312 10 288 276 92 41 chr6 32573898 32574094 -149841148 + L2 LINE L2 2553 2758 -556 242 319 14 0 chr6 32574306 32574378 -149840864 + L2 LINE L2 2995 3067 -205 4661 145 44 60 chr6 32574971 32576413 -149838829 - pTR5 LTR ERV1 0 2438 75 2073 77 21 3 chr6 32576483 32576768 -149838474 - AluSc SINE Alu -16 293 4 680 0 0 0 chr6 32577083 32577156 -149838086 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2144 54 54 7 chr6 32577646 32577941 -149837301 + AluY SINE Alu 1 309 -2 1880 93 7 0 chr6 32577953 32578223 -149837019 + AluSx SINE Alu 5 276 -36 24 53 0 0 chr6 32578223 32578261 -149836981 + AT_rich Low_complexity Low_complexity 1 38 0 340 273 120 69 chr6 32578745 32578961 -149836281 - L2 LINE L2 -4 3309 3083 524 83 0 0 chr6 32579319 32579391 -149835851 - tRNA-Met-e tRNA tRNA -3 72 1 22 35 0 0 chr6 32579467 32579496 -149835746 + AT_rich Low_complexity Low_complexity 1 29 0 271 231 0 15 chr6 32580169 32580234 -149835008 - MER81 DNA DNA -15 99 36 2187 86 0 3 chr6 32580576 32580877 -149834365 - AluSq SINE Alu -13 300 1 2146 92 0 3 chr6 32581770 32582076 -149833166 + AluSq SINE Alu 1 305 0 999 181 93 1 chr6 32582420 32582841 -149832401 - LTR54B LTR ERV1 -2 496 8 519 129 0 21 chr6 32583013 32583106 -149832136 - AluSg/x SINE Alu -3 306 216 7105 138 108 109 chr6 32583715 32585416 -149829826 + pTR5 LTR ERV1 741 2438 0 2425 58 0 14 chr6 32586029 32586360 -149828882 - AluY SINE Alu 0 311 1 292 230 23 11 chr6 32586361 32586448 -149828794 - L2 LINE L2 -1306 2008 1921 11831 165 119 8 chr6 32586466 32588100 -149827142 + L1PB1 LINE L1 6 1990 -4873 2092 135 24 0 chr6 32588100 32588388 -149826854 + AluSx SINE Alu 1 295 -17 11831 165 119 8 chr6 32588388 32589137 -149826105 + L1PB1 LINE L1 1990 2654 -4209 2509 57 0 3 chr6 32589137 32589437 -149825805 + AluY SINE Alu 1 299 -12 14539 176 12 14 chr6 32589439 32590669 -149824573 + L1PB1 LINE L1 2998 4230 -2637 2214 127 3 3 chr6 32590669 32590977 -149824265 + AluSq SINE Alu 1 308 -5 1890 131 30 7 chr6 32590983 32591280 -149823962 + AluSx SINE Alu 1 304 -8 14539 176 12 14 chr6 32591280 32593646 -149821596 + L1PB1 LINE L1 4235 6593 -274 2141 127 7 0 chr6 32593646 32593954 -149821288 - AluSx SINE Alu -2 310 1 14539 176 12 14 chr6 32593954 32594221 -149821021 + L1PB1 LINE L1 6593 6859 -8 363 220 28 9 chr6 32594257 32594366 -149820876 - L2 LINE L2 -1378 1936 1826 2197 178 48 111 chr6 32594424 32595092 -149820150 + LTR8A LTR ERV1 34 659 -68 219 36 0 0 chr6 32595093 32595121 -149820121 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 283 132 44 187 chr6 32596522 32596613 -149818629 + LTR8A LTR ERV1 650 727 0 277 289 209 21 chr6 32596625 32596860 -149818382 - L2 LINE L2 -2236 1078 800 378 282 28 7 chr6 32596862 32597004 -149818238 - MER112 DNA MER1_type -8 252 108 1121 195 0 10 chr6 32597420 32597625 -149817617 + AluSq SINE Alu 1 203 -110 608 88 33 103 chr6 32597625 32597799 -149817443 + AluSg/x SINE Alu 67 296 -16 233 206 63 0 chr6 32597799 32597862 -149817380 - L1MC4 LINE L1 -1340 6702 6636 2484 43 0 0 chr6 32598095 32598405 -149816837 - AluY SINE Alu 0 310 1 2611 43 0 7 chr6 32598627 32598926 -149816316 - AluY SINE Alu -14 297 1 2501 64 0 6 chr6 32598959 32599271 -149815971 - AluY SINE Alu -1 310 1 2074 93 3 21 chr6 32599301 32599626 -149815616 - AluY SINE Alu 0 320 1 227 329 0 0 chr6 32599757 32599839 -149815403 + L2 LINE L2 2601 2682 -632 1986 122 51 0 chr6 32600025 32600321 -149814921 - AluSx SINE Alu -1 311 1 1616 224 193 24 chr6 32600555 32601090 -149814152 + MLT1E2 LTR MaLR 2 626 0 776 241 107 88 chr6 32601090 32601572 -149813670 - MLT1F LTR MaLR -49 506 1 2002 120 0 30 chr6 32601612 32601912 -149813330 - AluSx SINE Alu -13 299 9 2284 78 0 14 chr6 32602234 32602567 -149812675 - AluY SINE Alu 0 311 1 779 99 21 14 chr6 32602870 32603012 -149812230 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 347 287 140 25 chr6 32603097 32603254 -149811988 + MER5A DNA MER1_type 14 188 -1 921 211 27 23 chr6 32603527 32603826 -149811416 + 7SLRNA srpRNA srpRNA 1 300 -20 2897 140 12 17 chr6 32604107 32604586 -149810656 + MER31A LTR ERV1 1 477 -8 4955 163 48 8 chr6 32604711 32605596 -149809646 + L1MD1 LINE L1 5323 6242 0 1770 213 54 82 chr6 32605681 32606311 -149808931 + LTR9 LTR ERV1 1 612 0 559 229 37 60 chr6 32607202 32607420 -149807822 + LTR7 LTR ERV1 238 450 0 679 0 0 0 chr6 32607724 32607797 -149807445 - tRNA-Phe-TTC tRNA tRNA -3 73 1 624 0 0 0 chr6 32608251 32608323 -149806919 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2291 104 0 0 chr6 32609326 32609625 -149805617 - AluSx SINE Alu -13 299 1 228 111 0 0 chr6 32610100 32610136 -149805106 + (TTTTC)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr6 32610384 32610408 -149804834 + (A)n Simple_repeat Simple_repeat 1 24 0 237 281 35 53 chr6 32610517 32610631 -149804611 + MIR SINE MIR 103 214 -48 2523 58 3 0 chr6 32610724 32611034 -149804208 - AluY SINE Alu 0 311 1 420 145 0 24 chr6 32611765 32611848 -149803394 + AluJo SINE Alu 45 125 -187 198 167 0 0 chr6 32611870 32611906 -149803336 + GA-rich Low_complexity Low_complexity 2 37 0 617 158 194 0 chr6 32611906 32612045 -149803197 + AluJo SINE Alu 120 285 -27 236 208 0 19 chr6 32612595 32612648 -149802594 + L2 LINE L2 3262 3313 0 2334 68 0 24 chr6 32613110 32613403 -149801839 + AluSg SINE Alu 1 286 -24 788 193 56 75 chr6 32613550 32613763 -149801479 + MLT1D LTR MaLR 296 504 -1 400 0 0 0 chr6 32613819 32613866 -149801376 + AluY SINE Alu 1 47 -265 326 0 0 0 chr6 32613866 32613902 -149801340 + AluY SINE Alu 9 44 -258 2093 74 53 3 chr6 32613902 32614186 -149801056 + AluSp SINE Alu 6 303 -10 716 12 0 0 chr6 32615053 32615135 -149800107 + tRNA-Leu-CTT tRNA tRNA 1 82 -3 1942 80 0 4 chr6 32615370 32615621 -149799621 - AluSx SINE Alu -62 250 1 184 339 0 0 chr6 32615891 32615950 -149799292 + L2 LINE L2 3000 3058 -214 205 226 48 0 chr6 32615994 32616056 -149799186 - L2 LINE L2 -63 3209 3145 1224 122 0 6 chr6 32616233 32616405 -149798837 - AluSx SINE Alu -141 171 1 596 261 122 84 chr6 32616405 32616822 -149798420 - L1M4 LINE L1 -2292 3854 3422 362 185 25 25 chr6 32616837 32616918 -149798324 + L1MC5 LINE L1 6776 6856 -1105 1523 209 41 102 chr6 32616937 32617219 -149798023 + L1MC5 LINE L1 7275 7573 -388 1906 139 68 0 chr6 32617219 32617500 -149797742 - AluJb SINE Alu -12 300 1 1523 209 41 102 chr6 32617500 32617630 -149797612 + L1MC5 LINE L1 7573 7709 -252 663 233 8 0 chr6 32617630 32617759 -149797483 - FLAM_A SINE Alu 0 133 4 1523 209 41 102 chr6 32617759 32617795 -149797447 + L1MC5 LINE L1 7709 7746 -215 2445 84 0 3 chr6 32617795 32618106 -149797136 - AluSx SINE Alu -2 310 1 1523 209 41 102 chr6 32618106 32618340 -149796902 + L1MC5 LINE L1 7746 7917 -44 2424 94 3 0 chr6 32618344 32618652 -149796590 - AluSp SINE Alu -4 309 1 1487 278 203 11 chr6 32618663 32619142 -149796100 - HAL1 LINE L1 -1679 828 442 1691 146 93 7 chr6 32619142 32619422 -149795820 - AluSx SINE Alu -8 304 1 1487 278 203 11 chr6 32619422 32619636 -149795606 - HAL1 LINE L1 -2065 442 2 210 327 58 29 chr6 32619991 32620095 -149795147 - L3 LINE CR1 -230 1347 1241 1901 103 114 0 chr6 32620199 32620471 -149794771 - AluSg1 SINE Alu -6 303 1 554 213 194 0 chr6 32620703 32620863 -149794379 + MIR SINE MIR 72 262 0 205 304 72 0 chr6 32620908 32621033 -149794209 - L2 LINE L2 -1148 2166 2033 282 265 135 60 chr6 32623329 32623514 -149791728 + MLT1K LTR MaLR 379 577 -11 265 365 0 0 chr6 32623609 32623724 -149791518 + L2 LINE L2 2644 2758 -556 467 203 34 74 chr6 32623744 32623892 -149791350 + MIR SINE MIR 3 144 -118 2022 122 0 72 chr6 32624222 32624543 -149790699 - AluSx SINE Alu -14 298 1 208 143 0 0 chr6 32625137 32625172 -149790070 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr6 32625471 32625501 -149789741 + AT_rich Low_complexity Low_complexity 1 30 0 210 250 0 0 chr6 32626510 32626550 -149788692 + (TG)n Simple_repeat Simple_repeat 2 41 0 2414 80 0 10 chr6 32626826 32627127 -149788115 - AluY SINE Alu -13 298 1 458 234 21 102 chr6 32627691 32627926 -149787316 - L1MC4 LINE L1 -1 8041 7826 414 232 1 1 chr6 32627949 32628048 -149787194 - L1ME2 LINE L1 -2 6168 6069 25 75 0 0 chr6 32628390 32628443 -149786799 + AT_rich Low_complexity Low_complexity 1 53 0 2292 120 0 0 chr6 32628672 32628972 -149786270 - AluSx SINE Alu -12 300 1 373 185 100 77 chr6 32630360 32630490 -149784752 + L2 LINE L2 2532 2664 -650 849 48 0 0 chr6 32630491 32630595 -149784647 - AluY SINE Alu 0 311 208 597 243 69 6 chr6 32630596 32630769 -149784473 + L2 LINE L2 2671 2854 -460 864 270 109 70 chr6 32630769 32631297 -149783945 + L2 LINE L2 2766 3313 0 241 23 0 45 chr6 32631342 32631386 -149783856 + Alu SINE Alu 256 297 -2 1013 232 102 68 chr6 32631946 32632635 -149782607 - L1MC5 LINE L1 -24 7937 7226 591 184 64 86 chr6 32632681 32632955 -149782287 - L1MC4 LINE L1 -770 7191 6973 1451 230 117 54 chr6 32632965 32633096 -149782146 + MLT1F LTR MaLR 1 122 -420 243 0 0 0 chr6 32633096 32633123 -149782119 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2005 143 7 0 chr6 32633125 32633411 -149781831 - AluSx SINE Alu -24 288 1 1451 230 117 54 chr6 32633411 32633719 -149781523 + MLT1F LTR MaLR 122 471 -71 894 262 31 18 chr6 32633911 32634197 -149781045 - L1MC4 LINE L1 -954 7088 6799 421 287 114 36 chr6 32634278 32634445 -149780797 + MIR SINE MIR 49 228 -34 254 330 23 0 chr6 32634470 32634558 -149780684 - MIR3 SINE MIR -22 186 97 575 311 56 0 chr6 32634770 32634950 -149780292 + MIR SINE MIR 59 248 -14 226 333 77 0 chr6 32635157 32635274 -149779968 - L3 LINE CR1 -1024 553 428 277 330 19 9 chr6 32635364 32635470 -149779772 - L3 LINE CR1 -1286 291 185 2065 110 169 82 chr6 32636419 32636884 -149778358 + L1MC1 LINE L1 5825 6333 0 358 167 176 28 chr6 32637232 32637340 -149777902 - L2 LINE L2 0 3313 3190 22 35 0 0 chr6 32637875 32637904 -149777338 + AT_rich Low_complexity Low_complexity 1 29 0 705 218 93 21 chr6 32637908 32638101 -149777141 - MIR SINE MIR -10 252 46 916 318 27 27 chr6 32638185 32638522 -149776720 + HERVL LTR ERVL 4243 4579 -1075 208 318 59 35 chr6 32638581 32638666 -149776576 - L2 LINE L2 -605 2709 2623 418 281 189 0 chr6 32639527 32639680 -149775562 - MIR SINE MIR -78 184 3 6300 161 163 27 chr6 32641003 32642495 -149772747 + pTR5 LTR ERV1 744 2438 0 971 186 32 84 chr6 32643606 32643802 -149771440 - L1MA4 LINE L1 -27 6273 6125 2201 92 3 0 chr6 32643802 32644085 -149771157 - AluSg SINE Alu -26 284 1 971 186 32 84 chr6 32644085 32644297 -149770945 - L1MA4 LINE L1 -175 6125 5903 6842 189 66 44 chr6 32644298 32646150 -149769092 - L1 LINE L1 -2337 3991 2182 1677 184 14 3 chr6 32646150 32646433 -149768809 - AluJb SINE Alu -26 286 1 6842 189 66 44 chr6 32646433 32647052 -149768190 - L1 LINE L1 -4146 2182 1578 2328 112 0 0 chr6 32647052 32647365 -149767877 - AluSq SINE Alu 0 313 1 6842 189 66 44 chr6 32647365 32647984 -149767258 - L1 LINE L1 -4750 1578 974 811 132 25 0 chr6 32647984 32648105 -149767137 - MSTA LTR MaLR 0 428 305 6842 189 66 44 chr6 32648105 32648792 -149766450 - L1 LINE L1 -5354 974 1 299 174 203 0 chr6 32649267 32649336 -149765906 - MER46C DNA MER2_type -209 129 47 562 197 111 0 chr6 32649339 32649456 -149765786 + FLAM_A SINE Alu 2 131 -2 1454 78 5 5 chr6 32649496 32649701 -149765541 - L1PB1 LINE L1 0 6151 5947 2235 104 0 3 chr6 32649852 32650149 -149765093 - AluSg SINE Alu -12 298 3 560 160 76 56 chr6 32650179 32650323 -149764919 - LTR45B LTR ERV1 0 489 343 238 188 62 47 chr6 32650420 32650484 -149764758 - MER72 LTR ERV1 -248 474 410 727 204 7 13 chr6 32651051 32651203 -149764039 - MER106A DNA MER1_type -84 152 2 21 36 0 0 chr6 32651257 32651285 -149763957 + AT_rich Low_complexity Low_complexity 1 28 0 849 72 64 0 chr6 32652137 32652262 -149762980 + L1PA14 LINE L1 6023 6155 -6 1821 147 6 19 chr6 32654835 32655149 -149760093 + AluSx SINE Alu 1 310 -2 1273 208 0 4 chr6 32655149 32655380 -149759862 - AluJb SINE Alu -39 273 44 669 291 57 5 chr6 32655733 32655943 -149759299 + MIR SINE MIR 11 231 -31 450 310 176 21 chr6 32656260 32656499 -149758743 - L3 LINE CR1 -12 1565 1290 239 297 62 62 chr6 32656568 32656713 -149758529 - L1ME3A LINE L1 -57 6113 5969 570 322 122 23 chr6 32656826 32657267 -149757975 - L3 LINE CR1 -310 1267 783 21 36 0 0 chr6 32657556 32657584 -149757658 + AT_rich Low_complexity Low_complexity 1 28 0 625 309 43 34 chr6 32657656 32657889 -149757353 + MIR SINE MIR 13 247 -15 2334 91 10 3 chr6 32658710 32659018 -149756224 + AluSp SINE Alu 1 310 -3 29 70 0 0 chr6 32659045 32659102 -149756140 + AT_rich Low_complexity Low_complexity 1 57 0 6590 151 34 22 chr6 32659363 32660056 -149755186 - L1MA8 LINE L1 -291 6000 5317 2110 148 0 0 chr6 32660056 32660366 -149754876 - AluSx SINE Alu -2 310 1 6590 151 34 22 chr6 32660366 32661659 -149753583 - L1MA8 LINE L1 -974 5317 3990 257 180 115 0 chr6 32661767 32661828 -149753414 + MER109 Unknown Unknown 895 962 -1470 * 2466 180 80 0 chr6 32661802 32662313 -149752929 + MER109 Unknown Unknown 1603 2154 -278 24 32 0 0 chr6 32662365 32662396 -149752846 + AT_rich Low_complexity Low_complexity 1 31 0 1723 169 3 10 chr6 32662594 32662890 -149752352 - AluJb SINE Alu -18 294 1 23 33 0 0 chr6 32663068 32663098 -149752144 + AT_rich Low_complexity Low_complexity 1 30 0 5890 119 25 0 chr6 32663270 32664265 -149750977 - L1PA15 LINE L1 -2 6163 5158 2203 73 10 30 chr6 32665269 32665572 -149749670 - AluY SINE Alu -14 297 1 2357 82 0 0 chr6 32667064 32667356 -149747886 + AluSx SINE Alu 1 292 -20 668 293 68 26 chr6 32668848 32669159 -149746083 + Charlie2 DNA MER1_type 1 324 -2458 271 214 0 29 chr6 32671259 32671362 -149743880 + GA-rich Low_complexity Low_complexity 3 102 0 180 347 0 42 chr6 32671562 32671657 -149743585 + MIR3 SINE MIR 86 176 -32 2173 133 91 12 chr6 32671768 32672188 -149743054 + L1MA7 LINE L1 5838 6290 -1 399 369 127 15 chr6 32672212 32672551 -149742691 + L2 LINE L2 2381 2757 -557 1054 182 8 68 chr6 32672551 32672815 -149742427 + L1MA10 LINE L1 6085 6332 -2 1160 146 0 6 chr6 32672836 32673014 -149742228 + AluJo SINE Alu 120 296 -16 829 257 51 24 chr6 32675125 32675378 -149739864 + MIR SINE MIR 1 260 -2 230 141 14 42 chr6 32675495 32675566 -149739676 + (TA)n Simple_repeat Simple_repeat 2 70 0 616 322 132 52 chr6 32676311 32676807 -149738435 + L2 LINE L2 2155 2610 -703 2161 76 0 50 chr6 32676807 32677124 -149738118 + AluSx SINE Alu 1 301 -11 616 322 132 52 chr6 32677124 32677581 -149737661 + L2 LINE L2 2610 3226 -87 252 212 30 30 chr6 32677648 32677714 -149737528 - L2 LINE L2 -69 3244 3179 187 274 20 0 chr6 32677976 32678027 -149737215 + L2 LINE L2 3211 3262 -10 704 206 36 36 chr6 32678247 32678412 -149736830 - FRAM SINE Alu -1 175 11 6073 208 3 13 chr6 32678613 32679102 -149736140 + L1PA16 LINE L1 3885 4377 -1789 369 0 0 0 chr6 32679102 32679143 -149736099 + (CA)n Simple_repeat Simple_repeat 2 42 0 6073 208 3 13 chr6 32679143 32680912 -149734330 + L1PA16 LINE L1 4377 6163 -3 2434 167 22 18 chr6 32680993 32682004 -149733238 - L1MA9 LINE L1 -6 6306 5230 2674 208 26 12 chr6 32682004 32682649 -149732593 - L1MA9 LINE L1 -1176 4970 4317 671 12 0 0 chr6 32682649 32682731 -149732511 + L1PA2 LINE L1 6074 6155 0 5131 153 60 21 chr6 32682738 32684628 -149730614 - L1MA8 LINE L1 -3 6288 4336 22256 93 21 14 chr6 32684654 32688737 -149726505 - L1PA8 LINE L1 -21 6151 2040 1381 170 66 111 chr6 32688742 32689184 -149726058 - L1MA8 LINE L1 -1812 4334 3913 1534 184 23 30 chr6 32689216 32689515 -149725727 - AluJo SINE Alu -13 299 3 21 0 0 0 chr6 32690944 32690965 -149724277 + AT_rich Low_complexity Low_complexity 1 21 0 687 196 88 14 chr6 32691142 32691290 -149723952 - MLT1A1 LTR MaLR -51 314 156 10951 30 3 0 chr6 32691613 32692290 -149722952 - L1PA4 LINE L1 0 6155 5482 2511 7 80 0 chr6 32692290 32692578 -149722664 - AluY SINE Alu 0 311 1 10951 30 3 0 chr6 32692578 32693989 -149721253 - L1PA4 LINE L1 -673 5482 4077 345 265 31 0 chr6 32694146 32694244 -149720998 - MER58 DNA MER1_type 0 2420 2320 36 62 0 0 chr6 32694244 32694308 -149720934 + AT_rich Low_complexity Low_complexity 1 64 0 617 253 0 18 chr6 32694345 32694511 -149720731 + L1MC/D LINE L1 5465 5627 -2368 6238 132 10 18 chr6 32694516 32694907 -149720335 + L1PB1 LINE L1 4613 5006 -1145 2357 91 0 0 chr6 32694907 32695204 -149720038 + AluY SINE Alu 1 297 -14 6238 132 10 18 chr6 32695204 32696003 -149719239 + L1PB1 LINE L1 5006 5787 -364 216 0 0 0 chr6 32696003 32696027 -149719215 + (TA)n Simple_repeat Simple_repeat 1 24 0 6238 132 10 18 chr6 32696027 32696389 -149718853 + L1PB1 LINE L1 5787 6150 -1 213 273 61 40 chr6 32696519 32696618 -149718624 - L2 LINE L2 0 3313 3213 297 274 24 0 chr6 32699445 32699529 -149715713 - MER112 DNA MER1_type -174 86 1 339 137 0 0 chr6 32700071 32700122 -149715120 - MER66A LTR ERV1 -141 337 287 2130 101 41 9 chr6 32703356 32703694 -149711548 - L1PA10 LINE L1 0 6168 5820 396 95 16 0 chr6 32704502 32704565 -149710677 - L1MA9 LINE L1 -22 6290 6227 22 0 0 0 chr6 32704678 32704700 -149710542 + AT_rich Low_complexity Low_complexity 1 22 0 2111 77 17 0 chr6 32704825 32705112 -149710130 + L1PA7 LINE L1 5860 6151 -3 697 254 235 16 chr6 32705126 32705449 -149709793 + L1MC4 LINE L1 7037 7430 -612 426 273 80 17 chr6 32705460 32705772 -149709470 + L1MC4 LINE L1 7691 8010 -32 580 310 137 35 chr6 32705868 32706210 -149709032 + L2 LINE L2 2921 3297 -16 27 0 0 0 chr6 32706447 32706474 -149708768 + AT_rich Low_complexity Low_complexity 1 27 0 25 83 0 0 chr6 32706541 32706601 -149708641 + AT_rich Low_complexity Low_complexity 1 60 0 266 248 56 48 chr6 32706746 32706871 -149708371 - L1ME4a LINE L1 -50 6071 5946 26 0 0 0 chr6 32706945 32706971 -149708271 + AT_rich Low_complexity Low_complexity 1 26 0 563 319 60 4 chr6 32706983 32707218 -149708024 - MLT1I LTR MaLR -24 385 138 613 192 17 23 chr6 32707429 32707606 -149707636 + CT-rich Low_complexity Low_complexity 3 178 0 1486 191 37 13 chr6 32707607 32707972 -149707270 - AluJb SINE Alu 0 373 2 2238 152 22 12 chr6 32707994 32708395 -149706847 - L1PA15 LINE L1 -4 6161 5757 2553 229 11 25 chr6 32708395 32708967 -149706275 - L1PA13 LINE L1 -6223 564 1 634 308 55 13 chr6 32709064 32709301 -149705941 - MLT1I LTR MaLR -153 256 10 576 286 95 87 chr6 32709311 32709731 -149705511 + L1ME4a LINE L1 5381 5807 -314 2657 43 0 0 chr6 32709731 32710036 -149705206 - AluY SINE Alu -6 305 1 576 286 95 87 chr6 32710036 32710122 -149705120 + L1ME4a LINE L1 5807 5891 -230 349 82 36 36 chr6 32710488 32710598 -149704644 + (TATAA)n Simple_repeat Simple_repeat 5 114 0 24 0 0 0 chr6 32710628 32710652 -149704590 + AT_rich Low_complexity Low_complexity 1 24 0 2129 133 0 3 chr6 32711197 32711499 -149703743 + AluSq SINE Alu 1 301 -12 2182 112 3 10 chr6 32711897 32712211 -149703031 - AluSx SINE Alu 0 312 1 701 154 0 0 chr6 32714692 32714815 -149700427 + L1MA8 LINE L1 6158 6280 -11 373 298 23 69 chr6 32714913 32715131 -149700111 + L1MC/D LINE L1 5264 5471 -2337 299 291 183 56 chr6 32715144 32715357 -149699885 + MIR SINE MIR 12 251 -11 1877 92 64 21 chr6 32717061 32717344 -149697898 + AluSq SINE Alu 1 295 -18 5010 78 19 0 chr6 32717739 32718410 -149696832 - L1PA8 LINE L1 -13 6159 5476 26 50 0 0 chr6 32718682 32718722 -149696520 + AT_rich Low_complexity Low_complexity 1 40 0 3030 48 13 0 chr6 32718722 32719096 -149696146 - L1PA8 LINE L1 -8 6164 5786 948 255 63 20 chr6 32719296 32719598 -149695644 - L2 LINE L2 -2 3311 2997 521 91 13 13 chr6 32719843 32719920 -149695322 - MSTB1 LTR MaLR -8 424 348 229 26 53 0 chr6 32719939 32719977 -149695265 + (TA)n Simple_repeat Simple_repeat 2 41 0 5132 206 48 6 chr6 32720493 32721775 -149693467 + L1MA7 LINE L1 2202 3536 -2610 4026 185 31 17 chr6 32721780 32722919 -149692323 + L1MA7 LINE L1 4521 5679 -612 4569 178 53 13 chr6 32722921 32723790 -149691452 + MER54A LTR ERVL 7 901 0 1670 150 11 83 chr6 32723790 32724164 -149691078 + L1MA7 LINE L1 5680 6026 -265 949 167 11 0 chr6 32725004 32725184 -149690058 + L1MA7 LINE L1 6105 6286 -5 31 58 0 0 chr6 32726655 32726707 -149688535 + AT_rich Low_complexity Low_complexity 1 52 0 245 159 0 0 chr6 32728801 32728845 -149686397 + U5 snRNA snRNA 1 44 -72 3196 139 65 58 chr6 32729064 32729423 -149685819 - L1MA9 LINE L1 0 6312 5957 2042 118 3 0 chr6 32729423 32729710 -149685532 - AluSx SINE Alu -15 297 10 3196 139 65 58 chr6 32729710 32729874 -149685368 - L1MA9 LINE L1 -355 5957 5796 213 39 0 0 chr6 32729874 32729900 -149685342 + (TG)n Simple_repeat Simple_repeat 1 26 0 3196 139 65 58 chr6 32729900 32730067 -149685175 - L1MA9 LINE L1 -516 5796 5616 298 189 0 40 chr6 32730189 32730263 -149684979 - L1ME2 LINE L1 -1 6163 6093 406 292 17 8 chr6 32730472 32730592 -149684650 - MIR SINE MIR -95 167 47 2477 238 56 27 chr6 32730615 32731478 -149683764 - L1ME1 LINE L1 -54 6112 5225 836 250 23 11 chr6 32731520 32731784 -149683458 - L1ME1 LINE L1 -1502 4644 4378 2614 84 13 5 chr6 32731816 32732197 -149683045 - L1PA6 LINE L1 0 6154 5771 32 43 0 0 chr6 32732724 32732770 -149682472 + AT_rich Low_complexity Low_complexity 1 46 0 26 30 0 0 chr6 32732949 32732982 -149682260 + AT_rich Low_complexity Low_complexity 1 33 0 390 85 0 0 chr6 32734498 32734557 -149680685 - L1MA2 LINE L1 0 6304 6246 837 160 0 0 chr6 32734572 32734703 -149680539 - FLAM_C SINE Alu -12 131 1 701 74 0 1 chr6 32734710 32734810 -149680432 - L1MA3 LINE L1 -56 6249 6137 32 26 0 0 chr6 32736717 32736756 -149678486 + AT_rich Low_complexity Low_complexity 1 39 0 2404 246 119 40 chr6 32736761 32736885 -149678357 - L1MC4 LINE L1 0 8042 7929 560 40 13 0 chr6 32736885 32736960 -149678282 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2404 246 119 40 chr6 32736960 32737896 -149677346 - L1MC4 LINE L1 -113 7929 6899 22 0 0 0 chr6 32740122 32740144 -149675098 + AT_rich Low_complexity Low_complexity 1 22 0 2908 164 57 26 chr6 32740504 32741187 -149674055 - L1MA9 LINE L1 -5 6307 5604 454 43 29 0 chr6 32741187 32741256 -149673986 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 6709 13 0 0 chr6 32741256 32742013 -149673229 - L1PA2 LINE L1 -11 6144 5388 1942 143 3 0 chr6 32742033 32742319 -149672923 - AluSx SINE Alu -24 288 2 841 165 0 45 chr6 32742321 32742497 -149672745 - L1MA9 LINE L1 -684 5607 5440 504 203 322 37 chr6 32742494 32742736 -149672506 - L1M3e LINE L1 -5729 1301 991 * 230 176 0 0 chr6 32742721 32742755 -149672487 - L1M3e LINE L1 -6993 37 4 * 330 228 13 87 chr6 32743771 32743920 -149671322 - L1MC4 LINE L1 -21 8021 7884 461 203 47 8 chr6 32743972 32744100 -149671142 - L1MC4 LINE L1 -372 7670 7538 364 329 94 68 chr6 32744113 32744504 -149670738 - MLT1K LTR MaLR -48 540 136 1172 274 59 16 chr6 32744504 32744927 -149670315 - LTR47B LTR ERVL -2 441 1 364 329 94 68 chr6 32744927 32744961 -149670281 - MLT1K LTR MaLR -452 136 104 320 291 25 0 chr6 32745048 32745127 -149670115 - MIR SINE MIR -176 86 6 345 176 0 0 chr6 32745578 32745646 -149669596 - L1MC4 LINE L1 -847 7195 7128 1612 231 154 16 chr6 32745648 32746090 -149669152 + MLT1D LTR MaLR 1 503 -2 494 259 84 27 chr6 32746091 32746130 -149669112 - L1MC4 LINE L1 -911 7131 7096 192 77 0 0 chr6 32746130 32746156 -149669086 + (TG)n Simple_repeat Simple_repeat 1 26 0 494 259 84 27 chr6 32746156 32746325 -149668917 - L1MC4 LINE L1 -946 7096 6903 1836 70 62 4 chr6 32746325 32746566 -149668676 + AluY SINE Alu 44 298 -13 494 259 84 27 chr6 32746566 32746618 -149668624 - L1MC4 LINE L1 -1139 6903 6855 261 89 0 0 chr6 32746930 32746975 -149668267 + L1 LINE L1 3734 3778 -2368 840 210 10 29 chr6 32747004 32747274 -149667968 - MLT1D LTR MaLR -172 333 29 7643 190 18 8 chr6 32747320 32749689 -149665553 + L1PA15 LINE L1 3777 6159 -6 2090 99 7 14 chr6 32750545 32750839 -149664403 + AluSq SINE Alu 6 297 -16 4035 160 53 17 chr6 32750975 32751751 -149663491 - L1PB4 LINE L1 -7 6149 5346 2212 89 0 0 chr6 32751778 32752058 -149663184 + AluY SINE Alu 1 280 -31 261 0 0 0 chr6 32752061 32752090 -149663152 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2127 128 3 0 chr6 32752545 32752843 -149662399 - AluSx SINE Alu -13 299 1 361 270 18 0 chr6 32753297 32753408 -149661834 - MER58 DNA MER1_type -15 2405 2293 4502 235 102 91 chr6 32753419 32755049 -149660193 + L1MC3 LINE L1 5468 7079 -706 300 280 21 21 chr6 32755049 32755142 -149660100 + MLT1F1 LTR MaLR 33 125 -442 4502 235 102 91 chr6 32755142 32755320 -149659922 + L1MC3 LINE L1 7079 7254 -531 8883 177 23 28 chr6 32755320 32757084 -149658158 + MER52A LTR ERV1 1 1755 0 4502 235 102 91 chr6 32757084 32757458 -149657784 + L1MC3 LINE L1 7254 7768 -17 428 315 127 17 chr6 32757495 32757803 -149657439 + L1M2 LINE L1 12 392 -6446 1827 154 36 11 chr6 32758202 32758560 -149656682 + L1MA6 LINE L1 5934 6300 0 21 0 0 0 chr6 32758976 32758997 -149656245 + AT_rich Low_complexity Low_complexity 1 21 0 2006 154 0 3 chr6 32760080 32760385 -149654857 - AluSx SINE Alu -8 304 1 358 331 127 0 chr6 32761053 32761234 -149654008 + MIR SINE MIR 53 256 -6 2630 58 0 0 chr6 32761445 32761772 -149653470 - L1PA6 LINE L1 -8 6146 5820 33 0 0 0 chr6 32763348 32763381 -149651861 + AT_rich Low_complexity Low_complexity 1 33 0 192 343 40 10 chr6 32765057 32765156 -149650086 + MIR SINE MIR 88 189 -73 282 386 9 0 chr6 32765176 32765290 -149649952 - MER5A DNA MER1_type -3 186 72 6772 138 47 9 chr6 32766768 32767954 -149647288 - Tigger3b DNA MER2_type 0 1231 1 24 0 0 0 chr6 32768176 32768200 -149647042 + AT_rich Low_complexity Low_complexity 1 24 0 5171 120 11 8 chr6 32768528 32769312 -149645930 - MER41-int LTR ERV1 -851 5095 4309 4945 115 23 4 chr6 32769317 32770049 -149645193 + MER41B-int LTR ERV1 5199 5944 -2 2845 105 117 36 chr6 32770049 32770555 -149644687 + MER41B LTR ERV1 1 547 -88 912 140 7 0 chr6 32772034 32772170 -149643072 - AluSg/x SINE Alu -20 292 156 843 253 89 104 chr6 32772269 32772786 -149642456 + LTR33 LTR ERVL 1 509 -12 298 327 27 0 chr6 32772825 32772935 -149642307 + L2 LINE L2 2921 3033 -280 220 194 0 0 chr6 32773129 32773165 -149642077 + (CA)n Simple_repeat Simple_repeat 2 37 0 2500 251 21 14 chr6 32773232 32774040 -149641202 - L1M4 LINE L1 -3157 3487 2674 4037 185 25 15 chr6 32774040 32774893 -149640349 - L1MC2 LINE L1 -8 6336 5476 1405 223 40 38 chr6 32774894 32775366 -149639876 - L1M4 LINE L1 -5029 1513 1041 5884 99 30 2 chr6 32775377 32776233 -149639009 - L1PA13 LINE L1 0 6163 5284 2500 255 11 54 chr6 32776233 32776979 -149638263 - L1M4 LINE L1 -5487 1055 342 21 0 0 0 chr6 32777153 32777174 -149638068 + AT_rich Low_complexity Low_complexity 1 21 0 2370 178 32 36 chr6 32777174 32777736 -149637506 - L1MA4 LINE L1 -8 6292 5733 205 200 0 0 chr6 32777764 32777804 -149637438 + T-rich Low_complexity Low_complexity 1 40 0 340 20 0 39 chr6 32777805 32777856 -149637386 - L1PA6 LINE L1 0 6154 6106 694 160 0 8 chr6 32777856 32777981 -149637261 - L1PA15 LINE L1 -19 6146 6023 * 4899 154 12 6 chr6 32777978 32779215 -149636027 - L1PA15 LINE L1 0 7584 6319 677 198 32 11 chr6 32779228 32779415 -149635827 - L1PA15 LINE L1 -3913 3652 3462 201 229 0 0 chr6 32779419 32779467 -149635775 + C-rich Low_complexity Low_complexity 4 51 0 990 209 69 28 chr6 32779467 32779831 -149635411 - L1PA15 LINE L1 -4068 3497 3119 341 191 0 0 chr6 32779872 32779935 -149635307 - L1PA15 LINE L1 -4553 3012 2950 266 175 52 21 chr6 32780024 32780121 -149635121 + (TA)n Simple_repeat Simple_repeat 1 100 0 1465 288 51 14 chr6 32780238 32780822 -149634420 + L1ME2 LINE L1 5529 6134 -30 6845 67 2 2 chr6 32781091 32782311 -149632931 - L1PA6 LINE L1 -8 6146 4917 2684 65 0 6 chr6 32782311 32782667 -149632575 + L1P LINE L1 3345 3698 -2448 848 133 20 0 chr6 32782662 32782813 -149632429 - L1P3 LINE L1 -2810 3651 3498 * 4573 204 54 15 chr6 32782811 32784022 -149631220 - L1MEc LINE L1 -2688 3458 2225 3249 122 33 19 chr6 32785126 32785754 -149629488 + L1P4 LINE L1 5148 5781 -385 2673 140 108 14 chr6 32785776 32786362 -149628880 - MER109 Unknown Unknown -60 2372 1732 9838 145 24 19 chr6 32786362 32788520 -149626722 - L1P3 LINE L1 -4276 2185 11 12513 162 55 52 chr6 32788537 32789415 -149625827 + MER109 Unknown Unknown 1 875 -1557 2145 31 4 0 chr6 32789415 32789673 -149625569 - L1PA2 LINE L1 0 6155 5897 12513 162 55 52 chr6 32789673 32792227 -149623015 + MER109 Unknown Unknown 875 2365 -67 2338 110 28 5 chr6 32792256 32792646 -149622596 - L1P4 LINE L1 -385 5781 5383 * 3420 190 42 18 chr6 32792642 32793581 -149621661 + L1MA7 LINE L1 2575 3535 -2611 * 3842 181 42 18 chr6 32793578 32794720 -149620522 + L1MA7 LINE L1 4520 5682 -609 1569 114 14 14 chr6 32794720 32794940 -149620302 + AluSg/x SINE Alu 77 296 -16 4242 177 51 15 chr6 32794947 32795811 -149619431 + MER54A LTR ERVL 7 901 0 1566 127 3 108 chr6 32795811 32796173 -149619069 + L1MA7 LINE L1 5680 6003 -288 723 101 63 38 chr6 32796180 32796338 -149618904 + L1MA7 LINE L1 6130 6291 0 985 130 11 0 chr6 32797209 32797386 -149617856 + L1MA7 LINE L1 6109 6287 -4 2170 99 0 17 chr6 32798119 32798412 -149616830 - AluSx SINE Alu -24 288 1 243 143 0 0 chr6 32801492 32801534 -149613708 + U5 snRNA snRNA 3 44 -72 1273 107 0 6 chr6 32801548 32801716 -149613526 + AluYb8 SINE Alu 1 167 -151 26 30 0 0 chr6 32802028 32802061 -149613181 + AT_rich Low_complexity Low_complexity 1 33 0 343 261 120 11 chr6 32802080 32802203 -149613039 - L1MC4 LINE L1 0 8042 7891 675 30 20 10 chr6 32802203 32802302 -149612940 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 343 261 120 11 chr6 32802302 32802362 -149612880 - L1MC4 LINE L1 -151 7891 7839 25034 38 5 1 chr6 32802668 32806668 -149608574 - L1PA4 LINE L1 -8 6147 2131 1713 257 72 14 chr6 32806667 32807518 -149607724 - L1MC4 LINE L1 -86 7722 6814 * 200 234 21 0 chr6 32808550 32808597 -149606645 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 2913 173 30 15 chr6 32810130 32810785 -149604457 - L1MA8 LINE L1 -21 6270 5606 1405 122 0 0 chr6 32810785 32810797 -149604445 - AluSx SINE Alu -13 297 286 207 0 0 0 chr6 32810797 32810820 -149604422 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1405 122 0 0 chr6 32810820 32811003 -149604239 - AluSx SINE Alu -23 287 102 387 0 0 0 chr6 32811004 32811047 -149604195 + (TG)n Simple_repeat Simple_repeat 2 44 0 6921 73 0 0 chr6 32811124 32812417 -149602825 - L1PA8 LINE L1 -2 6170 4875 953 101 0 0 chr6 32812420 32812539 -149602703 - AluSx SINE Alu -194 119 1 660 168 18 48 chr6 32812539 32812706 -149602536 - L1MA8 LINE L1 -692 5608 5447 436 251 42 74 chr6 32812718 32812933 -149602309 - L1M3e LINE L1 -5730 1300 1093 3447 112 8 6 chr6 32813102 32813612 -149601630 + MER9 LTR ERVK 1 511 0 1115 250 17 23 chr6 32814132 32814480 -149600762 - L1MC4 LINE L1 -569 7473 7128 6828 66 14 1 chr6 32814577 32816183 -149599059 - L1PA7 LINE L1 -6 6148 4533 5313 160 2 10 chr6 32816183 32817175 -149598067 - L1P LINE L1 -4108 2038 1055 1011 232 154 44 chr6 32817178 32817561 -149597681 + MLT1D LTR MaLR 79 503 -2 511 245 98 53 chr6 32817562 32817602 -149597640 - L1MC4 LINE L1 -911 7131 7094 345 47 0 0 chr6 32817602 32817645 -149597597 + (TG)n Simple_repeat Simple_repeat 2 44 0 511 245 98 53 chr6 32817645 32817869 -149597373 - L1MC4 LINE L1 -948 7094 6855 256 89 0 0 chr6 32818181 32818226 -149597016 + L1 LINE L1 3734 3778 -2368 1132 199 133 7 chr6 32818255 32818526 -149596716 - MLT1D LTR MaLR -172 333 29 7363 187 18 8 chr6 32818572 32820954 -149594288 + L1PA15 LINE L1 3777 6159 -6 2124 109 7 10 chr6 32821805 32822099 -149593143 + AluSq SINE Alu 1 293 -20 4039 165 29 8 chr6 32822232 32823019 -149592223 - L1PB4 LINE L1 -7 6149 5346 180 0 0 0 chr6 32823181 32823201 -149592041 + (A)n Simple_repeat Simple_repeat 1 20 0 2129 134 0 0 chr6 32823492 32823791 -149591451 - AluSx SINE Alu -13 299 1 4599 48 5 9 chr6 32823905 32824482 -149590760 - L1PA6 LINE L1 -7 6147 5573 384 247 33 13 chr6 32824829 32824979 -149590263 - MER58 DNA MER1_type -15 2405 2253 3786 253 32 59 chr6 32824980 32826596 -149588646 + L1MC3 LINE L1 5497 7068 -717 319 247 21 21 chr6 32826607 32826700 -149588542 + MLT1F1 LTR MaLR 33 125 -442 691 206 14 0 chr6 32826737 32826878 -149588364 + L1MD3 LINE L1 7443 7585 -410 6828 182 56 34 chr6 32826878 32828414 -149586828 + MER52A LTR ERV1 1 1570 -185 1080 230 4 0 chr6 32828447 32828704 -149586538 - L1P LINE L1 -2208 3938 3681 795 353 22 18 chr6 32828940 32829441 -149585801 - L1PA13 LINE L1 -6201 586 84 567 42 0 0 chr6 32829442 32829514 -149585728 - L1P LINE L1 -1832 4314 4243 1348 221 61 0 chr6 32829641 32830017 -149585225 - L1MD3 LINE L1 -15 7980 7582 685 190 73 0 chr6 32830017 32830154 -149585088 - MER52A LTR ERV1 0 1755 1609 269 56 0 0 chr6 32830203 32830239 -149585003 + L1P4 LINE L1 5541 5576 -585 * 4308 74 16 6 chr6 32830225 32831182 -149584060 - L1P3 LINE L1 -432 5722 4762 277 297 0 69 chr6 32831205 32831306 -149583936 + MIR SINE MIR 169 262 0 479 121 0 0 chr6 32832759 32832842 -149582400 - L1MB8 LINE L1 -3 6175 6093 1307 180 51 0 chr6 32832860 32833154 -149582088 - L1MB4 LINE L1 -6 6174 5866 24 32 0 0 chr6 32833599 32833630 -149581612 + AT_rich Low_complexity Low_complexity 1 31 0 1766 166 0 3 chr6 32833670 32833982 -149581260 - AluJb SINE Alu 0 311 1 2067 118 10 16 chr6 32834018 32834332 -149580910 - AluSp SINE Alu -1 312 1 22 56 0 0 chr6 32834435 32834471 -149580771 + AT_rich Low_complexity Low_complexity 1 36 0 1761 181 3 23 chr6 32834628 32834927 -149580315 + AluJb SINE Alu 1 293 -19 198 167 0 0 chr6 32835068 32835104 -149580138 + (TA)n Simple_repeat Simple_repeat 2 37 0 1671 330 34 10 chr6 32835200 32835914 -149579328 + HERV16 LTR ERVL 2312 3042 -1954 841 354 35 36 chr6 32836024 32836956 -149578286 + HERV16 LTR ERVL 3279 4209 -1555 354 328 71 16 chr6 32837439 32837622 -149577620 + HERV16 LTR ERVL 4746 4938 -826 1303 43 6 0 chr6 32837947 32838109 -149577133 - L1PA5 LINE L1 -9 6145 5983 902 323 18 46 chr6 32838164 32838598 -149576644 + LTR16A LTR ERVL 18 439 -11 293 110 77 0 chr6 32838616 32838707 -149576535 + (TA)n Simple_repeat Simple_repeat 1 98 0 423 290 27 71 chr6 32840495 32840719 -149574523 - MIR SINE MIR 0 262 49 319 348 11 11 chr6 32840731 32840909 -149574333 + GA-rich Low_complexity Low_complexity 2 179 0 22 0 0 0 chr6 32841034 32841056 -149574186 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 32842455 32842478 -149572764 + AT_rich Low_complexity Low_complexity 1 23 0 1101 186 34 17 chr6 32843103 32843340 -149571902 - MER21-int LTR ERV1 -224 3967 3727 7126 110 19 8 chr6 32843345 32844443 -149570799 + THE1C-int LTR MaLR 471 1580 0 2501 120 13 11 chr6 32844443 32844817 -149570425 + THE1C LTR MaLR 1 375 0 1271 236 10 3 chr6 32844817 32845114 -149570128 - MER21-int LTR ERV1 -3706 485 187 2154 123 0 0 chr6 32845278 32845570 -149569672 - AluSg SINE Alu -18 292 1 4333 89 17 0 chr6 32845590 32846188 -149569054 - L1PA10 LINE L1 -5 6163 5556 994 100 0 9 chr6 32846188 32846417 -149568825 + L1PA10 LINE L1 5199 5546 -622 226 310 0 0 chr6 32847147 32847218 -149568024 + CT-rich Low_complexity Low_complexity 1 71 0 5001 32 2 5 chr6 32847850 32848451 -149566791 + L1PA4 LINE L1 5557 6155 0 30 27 0 0 chr6 32848470 32848507 -149566735 + AT_rich Low_complexity Low_complexity 1 37 0 346 163 12 12 chr6 32849303 32849383 -149565859 + CT-rich Low_complexity Low_complexity 4 83 0 21 0 0 0 chr6 32851174 32851195 -149564047 + AT_rich Low_complexity Low_complexity 1 21 0 895 122 8 0 chr6 32851196 32851319 -149563923 - FLAM_C SINE Alu -19 124 1 1938 267 51 30 chr6 32851930 32852652 -149562590 + L2 LINE L2 1271 2007 -1307 22 0 0 0 chr6 32853954 32853976 -149561266 + AT_rich Low_complexity Low_complexity 1 22 0 1107 216 0 14 chr6 32854287 32854509 -149560733 + MER20 DNA MER1_type 1 219 0 206 103 0 26 chr6 32854980 32855019 -149560223 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 187 386 101 16 chr6 32858870 32859176 -149556066 + L2 LINE L2 1164 1495 -1819 250 263 119 34 chr6 32859412 32859530 -149555712 - Charlie8 DNA MER1_type -2177 240 113 885 28 0 0 chr6 32859556 32859662 -149555580 + L1PA2 LINE L1 6050 6155 0 1315 272 47 17 chr6 32859854 32860446 -149554796 - L1ME3A LINE L1 -232 5938 5329 427 284 72 28 chr6 32860708 32861071 -149554171 + L1M4 LINE L1 3868 4246 -1900 361 241 80 70 chr6 32861081 32861268 -149553974 + L1M4 LINE L1 4519 4707 -1439 2324 219 36 11 chr6 32861269 32861821 -149553421 - MER4D LTR ERV1 0 903 338 * 2863 107 8 30 chr6 32861819 32862049 -149553193 + MER4D LTR ERV1 133 349 -554 2816 159 39 76 chr6 32862049 32862684 -149552558 - LTR9 LTR ERV1 0 612 1 2863 107 8 30 chr6 32862684 32862922 -149552320 + MER4D LTR ERV1 349 591 -312 2458 141 59 15 chr6 32862922 32863383 -149551859 - L1PA14 LINE L1 0 6161 5681 1384 162 0 5 chr6 32863392 32863614 -149551628 - AluJb SINE Alu -14 298 78 2984 84 0 14 chr6 32863652 32864092 -149551150 - L1PA14 LINE L1 -474 5687 5254 * 3219 202 20 27 chr6 32864089 32864896 -149550346 - L1PA14 LINE L1 -1214 4932 4132 380 142 0 52 chr6 32864906 32865040 -149550202 + (TA)n Simple_repeat Simple_repeat 2 128 0 28664 113 9 11 chr6 32865044 32870605 -149544637 - L1PA7 LINE L1 -9 6145 600 231 196 18 0 chr6 32870795 32870851 -149544391 - L1MA5 LINE L1 -10 6290 6234 435 95 14 0 chr6 32870859 32870933 -149544309 + L1MA4 LINE L1 6102 6176 -124 1065 238 39 10 chr6 32871220 32871527 -149543715 + L1P4 LINE L1 3310 3625 -2521 2443 128 41 16 chr6 32871528 32871967 -149543275 - LTR7 LTR ERV1 0 450 1 4396 115 7 15 chr6 32871967 32872691 -149542551 - HERVH LTR ERV1 0 7713 6996 * 14579 196 14 20 chr6 32872685 32877825 -149537417 - HERVH LTR ERV1 -1878 5835 791 891 202 30 53 chr6 32877880 32878418 -149536824 - HERVH LTR ERV1 -7254 459 1 2210 145 45 27 chr6 32878418 32878860 -149536382 - LTR7 LTR ERV1 0 450 1 4392 195 12 19 chr6 32878860 32879833 -149535409 + L1P4 LINE L1 3622 4588 -1558 467 133 89 0 chr6 32879843 32879933 -149535309 + MER4A LTR ERV1 1 98 -566 1621 139 11 72 chr6 32879933 32880301 -149534941 + MER4A LTR ERV1 261 664 0 2549 205 12 49 chr6 32880305 32880441 -149534801 + L1P4 LINE L1 4599 4738 -1408 279 0 0 0 chr6 32880441 32880472 -149534770 + (CA)n Simple_repeat Simple_repeat 2 32 0 2549 205 12 49 chr6 32880472 32881066 -149534176 + L1P4 LINE L1 4738 5302 -844 1705 119 15 0 chr6 32881058 32881327 -149533915 + L1P4 LINE L1 5510 5782 -384 * 2193 100 10 0 chr6 32881328 32881619 -149533623 + AluSc SINE Alu 1 294 -15 5783 220 99 24 chr6 32881625 32883659 -149531583 - L1M4c LINE L1 -4734 2225 43 391 310 150 42 chr6 32883936 32884388 -149530854 + L1MC/D LINE L1 5298 5798 -2010 24 96 0 0 chr6 32884586 32884659 -149530583 + AT_rich Low_complexity Low_complexity 1 73 0 322 279 29 22 chr6 32886109 32886245 -149528997 - ERVL LTR ERVL -3948 1816 1680 1975 170 23 0 chr6 32886245 32886592 -149528650 - MLT1A1 LTR MaLR 0 365 11 451 181 181 6 chr6 32887317 32887477 -149527765 - L1ME LINE L1 -717 5445 5258 361 313 38 8 chr6 32887527 32887658 -149527584 - L1 LINE L1 -2385 3761 3627 44 75 0 0 chr6 32888002 32888095 -149527147 + AT_rich Low_complexity Low_complexity 1 93 0 2102 78 58 0 chr6 32888365 32888659 -149526583 - AluY SINE Alu 0 311 1 1907 147 54 78 chr6 32889050 32889548 -149525694 + LTR19A LTR ERV1 1 486 0 1630 156 99 6 chr6 32890741 32891055 -149524187 + MER61A LTR ERV1 1 343 0 2093 97 17 13 chr6 32891095 32891393 -149523849 - THE1B LTR MaLR -65 299 1 603 257 109 43 chr6 32891395 32891631 -149523611 + L1MB7 LINE L1 4801 5020 -1164 1009 156 83 5 chr6 32891631 32891836 -149523406 - MER58A DNA MER1_type -3 221 1 603 257 109 43 chr6 32891836 32892650 -149522592 + L1MB7 LINE L1 5020 5907 -277 21 0 0 0 chr6 32892650 32892671 -149522571 + AT_rich Low_complexity Low_complexity 1 21 0 300 256 154 26 chr6 32892886 32893003 -149522239 - HAL1 LINE L1 -1168 1339 1208 40 0 0 0 chr6 32894370 32894410 -149520832 + AT_rich Low_complexity Low_complexity 1 40 0 704 258 91 62 chr6 32895541 32896088 -149519154 - L1MCa LINE L1 -5030 1396 834 1105 106 12 0 chr6 32896102 32896263 -149518979 - AluSg/x SINE Alu 0 310 148 1808 174 16 47 chr6 32896332 32896718 -149518524 - MLT1A2 LTR MaLR 0 374 1 1799 247 39 10 chr6 32896718 32897127 -149518115 - MLT1A2-int LTR MaLR 0 1735 1315 344 229 0 14 chr6 32897296 32897366 -149517876 - MLT1A2-int LTR MaLR -992 743 675 349 215 0 0 chr6 32897427 32897492 -149517750 - MLT1A2-int LTR MaLR -488 883 819 2171 231 65 42 chr6 32897497 32898133 -149517109 - MLT1A2-int LTR MaLR -1081 654 5 1476 194 79 25 chr6 32898137 32898492 -149516750 - MLT1A2 LTR MaLR 0 374 1 43962 43 1 0 chr6 32899505 32905653 -149509589 + L1PA4 LINE L1 3 6152 -3 24 67 0 0 chr6 32905765 32905810 -149509432 + AT_rich Low_complexity Low_complexity 1 45 0 241 317 84 14 chr6 32906272 32906414 -149508828 - L1MC/D LINE L1 -301 5820 5684 5584 101 8 2 chr6 32907397 32908231 -149507011 - L1PA7 LINE L1 -2262 3884 3046 10208 94 26 9 chr6 32908231 32910447 -149504795 + L1PA7 LINE L1 3915 6149 -5 24 0 0 0 chr6 32911016 32911040 -149504202 + AT_rich Low_complexity Low_complexity 1 24 0 247 218 39 39 chr6 32911137 32911215 -149504027 + MIR SINE MIR 53 130 -132 995 153 47 6 chr6 32911599 32911769 -149503473 + AluSg/x SINE Alu 131 307 -3 210 169 46 15 chr6 32912352 32912417 -149502825 + CT-rich Low_complexity Low_complexity 4 70 0 311 0 26 0 chr6 32913102 32913141 -149502101 + (TA)n Simple_repeat Simple_repeat 2 41 0 2209 61 7 17 chr6 32913143 32913439 -149501803 - AluY SINE Alu -18 293 1 310 128 8 56 chr6 32914267 32914392 -149500850 + (TA)n Simple_repeat Simple_repeat 2 120 0 180 277 117 109 chr6 32914659 32914796 -149500446 - L2 LINE L2 -556 2758 2621 604 280 20 35 chr6 32915401 32915625 -149499617 - MIR SINE MIR 0 262 42 26 30 0 0 chr6 32919507 32919540 -149495702 + AT_rich Low_complexity Low_complexity 1 33 0 40 49 0 0 chr6 32919905 32919966 -149495276 + AT_rich Low_complexity Low_complexity 1 61 0 212 235 20 0 chr6 32920031 32920082 -149495160 - L2 LINE L2 0 3313 3262 1735 242 114 57 chr6 32920149 32920246 -149494996 + L1MEc LINE L1 299 389 -6007 1910 131 70 25 chr6 32920246 32920605 -149494637 + THE1C LTR MaLR 1 375 0 1735 242 114 57 chr6 32920605 32921264 -149493978 + L1MEc LINE L1 389 1098 -5298 240 163 0 0 chr6 32921265 32921308 -149493934 - MLT2B1 LTR ERVL -102 418 376 2281 209 120 65 chr6 32921476 32922298 -149492944 + MER52A LTR ERV1 151 1018 -737 925 160 155 0 chr6 32922329 32922507 -149492735 + Tigger1 DNA MER2_type 2 207 -2211 3456 56 4 9 chr6 32922507 32922957 -149492285 + LTR7 LTR ERV1 1 448 -2 3183 118 31 4 chr6 32922959 32923444 -149491798 + Tigger1 DNA MER2_type 203 700 -1718 321 226 20 69 chr6 32923445 32923547 -149491695 + L1MEc LINE L1 3140 3236 -2979 981 110 0 0 chr6 32923556 32923692 -149491550 - AluJb SINE Alu -176 136 1 27 29 0 0 chr6 32923992 32924026 -149491216 + AT_rich Low_complexity Low_complexity 1 34 0 25 75 0 0 chr6 32924144 32924197 -149491045 + AT_rich Low_complexity Low_complexity 1 53 0 247 99 56 14 chr6 32924887 32924958 -149490284 + (TA)n Simple_repeat Simple_repeat 1 74 0 27 49 0 0 chr6 32925013 32925054 -149490188 + AT_rich Low_complexity Low_complexity 1 41 0 247 158 0 0 chr6 32925061 32925099 -149490143 + L1MB1 LINE L1 6122 6159 -30 10060 28 6 2 chr6 32925121 32927098 -149488144 + L1PA4 LINE L1 4166 6152 -3 267 368 76 11 chr6 32927101 32927286 -149487956 + L3 LINE CR1 1379 1575 -2 225 371 22 0 chr6 32927890 32927979 -149487263 - L2 LINE L2 -8 3264 3174 2414 87 3 0 chr6 32928242 32928551 -149486691 - AluSx SINE Alu -2 310 1 275 345 58 35 chr6 32929354 32929615 -149485627 - L2 LINE L2 -1217 2097 1831 498 0 27 40 chr6 32929761 32929836 -149485406 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 204 97 0 0 chr6 32929931 32929962 -149485280 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 163 0 0 chr6 32930303 32930352 -149484890 + L1PA15 LINE L1 6101 6149 -16 21 0 0 0 chr6 32931876 32931897 -149483345 + AT_rich Low_complexity Low_complexity 1 21 0 279 330 97 39 chr6 32934144 32934350 -149480892 - MIR SINE MIR -9 253 36 206 132 0 26 chr6 32934404 32934442 -149480800 + (TG)n Simple_repeat Simple_repeat 2 38 0 6225 65 4 13 chr6 32934948 32935772 -149479470 - L1PA7 LINE L1 0 6469 5654 1407 130 5 5 chr6 32935774 32935981 -149479261 + AluSc SINE Alu 1 207 -102 16504 92 6 3 chr6 32935989 32938361 -149476881 - L1PA7 LINE L1 -796 5665 3287 2864 115 0 0 chr6 32938356 32938764 -149476478 - L1PA7 LINE L1 -6053 408 1 * 707 85 0 0 chr6 32938829 32938923 -149476319 + AluY SINE Alu 1 94 -217 2182 241 60 52 chr6 32938925 32939361 -149475881 - L1MC/D LINE L1 -714 5448 5017 1799 130 6 93 chr6 32939361 32939684 -149475558 - AluSx SINE Alu -17 295 1 2182 241 60 52 chr6 32939684 32939990 -149475252 - L1MC/D LINE L1 -1145 5017 4715 2445 49 0 3 chr6 32939990 32940276 -149474966 - AluY SINE Alu -21 290 6 2182 241 60 52 chr6 32940276 32940608 -149474634 - L1MC/D LINE L1 -1447 4715 4409 370 323 85 32 chr6 32940982 32941499 -149473743 - L1ME1 LINE L1 -205 5961 5433 360 246 0 27 chr6 32941506 32941616 -149473626 - L1MC4a LINE L1 -7 7801 7695 769 314 28 8 chr6 32941758 32942010 -149473232 - MIR SINE MIR 0 262 6 1739 207 61 71 chr6 32942117 32942625 -149472617 + MER77 LTR ERV1 1 503 -102 341 169 0 22 chr6 32942897 32942986 -149472256 + GA-rich Low_complexity Low_complexity 3 89 0 598 314 92 42 chr6 32943499 32944600 -149470642 - L1ME1 LINE L1 -746 5400 4226 2531 44 0 3 chr6 32944600 32944898 -149470344 - AluY SINE Alu -14 297 1 598 314 92 42 chr6 32944898 32945060 -149470182 - L1ME1 LINE L1 -1920 4226 4074 252 258 30 0 chr6 32945099 32945165 -149470077 - MLT1G1 LTR MaLR 0 555 488 374 248 56 56 chr6 32945219 32945344 -149469898 - MLT1G1 LTR MaLR -224 371 247 309 299 15 44 chr6 32945533 32945670 -149469572 - L1ME1 LINE L1 -2142 4004 3872 481 371 102 12 chr6 32945704 32946046 -149469196 - L2 LINE L2 -61 3252 2880 560 296 139 27 chr6 32946077 32946479 -149468763 - L1ME1 LINE L1 -2749 3397 2951 933 249 47 17 chr6 32946521 32946883 -149468359 - L1M4 LINE L1 -1383 4763 4391 374 262 101 42 chr6 32946986 32947272 -149467970 - L1M4 LINE L1 -1962 4184 3882 189 74 0 0 chr6 32947275 32947302 -149467940 + (TG)n Simple_repeat Simple_repeat 2 28 0 396 221 21 0 chr6 32947303 32947398 -149467844 - L1M4 LINE L1 -2464 3682 3586 201 74 0 0 chr6 32947407 32947434 -149467808 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2879 222 94 22 chr6 32947441 32948356 -149466886 - L1MC4 LINE L1 -1 8041 7061 * 6732 134 9 6 chr6 32948341 32950008 -149465234 - L1PB1 LINE L1 -1 6150 4477 286 260 193 31 chr6 32950080 32950211 -149465031 - MIR SINE MIR -27 181 33 279 228 0 0 chr6 32950600 32950657 -149464585 + L2 LINE L2 3256 3312 -1 22 0 0 0 chr6 32950759 32950781 -149464461 + AT_rich Low_complexity Low_complexity 1 22 0 663 255 26 42 chr6 32951166 32951358 -149463884 + MER5A DNA MER1_type 1 189 0 976 144 0 7 chr6 32953229 32953375 -149461867 + AluSg/x SINE Alu 149 293 -19 22 0 0 0 chr6 32953489 32953511 -149461731 + AT_rich Low_complexity Low_complexity 1 22 0 2098 123 0 7 chr6 32954669 32954953 -149460289 - AluSx SINE Alu -26 286 5 837 187 48 0 chr6 32957714 32957880 -149457362 - FAM SINE Alu 0 175 2 2161 100 3 7 chr6 32957998 32958289 -149456953 - AluSc SINE Alu -19 290 1 422 304 20 7 chr6 32958354 32958502 -149456740 + L1PA12 LINE L1 1 150 -7431 * 10791 212 20 30 chr6 32958498 32960853 -149454389 + L1PA12 LINE L1 1867 4408 -3176 3773 45 0 2 chr6 32960853 32961316 -149453926 - L1PA5 LINE L1 -9 6145 5684 10791 212 20 30 chr6 32961316 32963133 -149452109 + L1PA12 LINE L1 4408 6241 -1343 201 255 0 0 chr6 32963527 32963578 -149451664 + MIR SINE MIR 90 140 -122 327 175 16 0 chr6 32963578 32963641 -149451601 + MER20 DNA MER1_type 156 219 0 269 322 35 0 chr6 32963839 32963926 -149451316 + L2 LINE L2 1822 1911 -1403 565 313 27 20 chr6 32964525 32964819 -149450423 + L1ME1 LINE L1 5871 6166 0 2666 27 0 0 chr6 32965717 32966018 -149449224 + AluYa5 SINE Alu 1 301 -10 1842 113 75 39 chr6 32966742 32967104 -149448138 + THE1C LTR MaLR 1 375 0 2339 152 59 51 chr6 32967140 32967665 -149447577 - L1MA10 LINE L1 0 6334 5806 1725 164 35 57 chr6 32968510 32968882 -149446360 - THE1B LTR MaLR 0 364 1 409 330 122 17 chr6 32970605 32970835 -149444407 + MIR SINE MIR 2 255 -7 204 390 20 20 chr6 32970918 32971064 -149444178 - MIR SINE MIR -112 150 5 5676 160 40 13 chr6 32971251 32973302 -149441940 + L1MA8 LINE L1 4186 6281 -10 3830 124 68 81 chr6 32973658 32974453 -149440789 - LTR1 LTR ERV1 0 785 1 20492 125 19 4 chr6 32975309 32979438 -149435804 - L1PA10 LINE L1 -4 6164 1975 222 242 34 88 chr6 32979438 32979636 -149435606 - L2 LINE L2 -22 3291 3039 369 322 28 21 chr6 32983300 32983443 -149431799 - MIR SINE MIR -47 215 72 21 36 0 0 chr6 32983834 32983862 -149431380 + AT_rich Low_complexity Low_complexity 1 28 0 4107 163 29 0 chr6 32984395 32985121 -149430121 + L1MA7 LINE L1 5501 6247 -44 249 314 21 89 chr6 32985250 32985441 -149429801 - MIR SINE MIR -4 258 81 22132 119 10 53 chr6 32985593 32990587 -149424655 + L1PA8 LINE L1 12 4585 -1587 2910 0 0 0 chr6 32990587 32990898 -149424344 + AluYa5 SINE Alu 1 311 0 22132 119 10 53 chr6 32990898 32992421 -149422821 + L1PA8 LINE L1 4585 6172 0 514 300 148 30 chr6 32992438 32992741 -149422501 - L2 LINE L2 -942 2372 2034 40 37 0 0 chr6 32995971 32996025 -149419217 + AT_rich Low_complexity Low_complexity 1 54 0 5190 142 2 0 chr6 32996025 32997289 -149417953 - L1PA16 LINE L1 -10 6156 4870 794 134 0 30 chr6 32997704 32997838 -149417404 + FLAM_C SINE Alu 1 130 -3 237 216 103 10 chr6 32998035 32998132 -149417110 + L1ME3A LINE L1 50 155 -6241 2301 279 60 21 chr6 32998280 32999547 -149415695 + L1ME3A LINE L1 904 2251 -4145 288 253 11 0 chr6 32999556 32999643 -149415599 + L1ME3A LINE L1 2221 2308 -4088 * 316 161 0 16 chr6 32999639 32999701 -149415541 + L1MA4 LINE L1 6023 6083 -217 667 148 9 0 chr6 32999728 32999843 -149415399 + L1MA9 LINE L1 6197 6312 0 227 216 0 0 chr6 33000049 33000086 -149415156 - MER21B LTR ERV1 -768 95 59 280 332 83 18 chr6 33000105 33000334 -149414908 + L2 LINE L2 3056 3299 -14 285 29 0 0 chr6 33002217 33002251 -149412991 + (TAA)n Simple_repeat Simple_repeat 1 34 0 2824 280 76 20 chr6 33002407 33002977 -149412265 + L1ME3A LINE L1 2558 3095 -3120 204 97 0 0 chr6 33002977 33003008 -149412234 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2824 280 76 20 chr6 33003008 33003571 -149411671 + L1ME3A LINE L1 3095 3625 -2590 2503 59 0 0 chr6 33003571 33003876 -149411366 + AluY SINE Alu 1 305 -6 2824 280 76 20 chr6 33003876 33004765 -149410477 + L1ME3A LINE L1 3625 4737 -1478 1021 221 85 18 chr6 33004837 33005168 -149410074 + L1ME3A LINE L1 5497 5849 -382 438 175 68 19 chr6 33005214 33005317 -149409925 + L1ME3A LINE L1 6117 6224 -15 24 0 0 0 chr6 33005548 33005572 -149409670 + AT_rich Low_complexity Low_complexity 1 24 0 390 183 0 21 chr6 33005613 33005706 -149409536 + L1MC/D LINE L1 5338 5428 -2380 2659 216 83 111 chr6 33005908 33006899 -149408343 + L1MD2 LINE L1 142 1104 -5439 1434 215 18 29 chr6 33006898 33007284 -149407958 + L1MD2 LINE L1 1313 1694 -4846 * 4355 234 69 16 chr6 33007377 33009878 -149405364 + L1MD2 LINE L1 4067 6710 -43 305 294 92 12 chr6 33010069 33010232 -149405010 + L1MC/D LINE L1 5640 5815 -1993 243 309 16 8 chr6 33010232 33010358 -149404884 + (TA)n Simple_repeat Simple_repeat 1 127 0 1797 184 10 0 chr6 33010879 33011178 -149404064 - AluSx SINE Alu -10 302 1 527 234 0 0 chr6 33011627 33011734 -149403508 + L1MC/D LINE L1 5665 5771 -588 452 356 172 4 chr6 33011751 33012298 -149402944 + L2 LINE L2 2334 2972 -342 2496 64 0 0 chr6 33012313 33012611 -149402631 - AluY SINE Alu -13 298 1 1008 291 86 39 chr6 33012690 33013178 -149402064 + L2 LINE L2 715 1225 -2089 1074 193 8 29 chr6 33013215 33013453 -149401789 + L1M3e LINE L1 1728 1960 -5070 969 318 163 13 chr6 33013480 33014034 -149401208 + L2 LINE L2 1310 1946 -1368 8404 219 74 2 chr6 33016181 33017956 -149397286 - L1M2 LINE L1 -4944 1905 2 1848 115 67 11 chr6 33018059 33018369 -149396873 - AluSx SINE Alu 0 312 1 614 327 45 5 chr6 33018791 33019011 -149396231 + MIR SINE MIR 31 259 -3 812 216 5 44 chr6 33019027 33019231 -149396011 + AluJo SINE Alu 117 312 0 30 59 0 0 chr6 33019232 33019283 -149395959 + AT_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr6 33019508 33019542 -149395700 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr6 33019815 33019848 -149395394 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr6 33020648 33020676 -149394566 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 33024038 33024061 -149391181 + AT_rich Low_complexity Low_complexity 1 23 0 1038 250 80 9 chr6 33024331 33024655 -149390587 - L1MC4a LINE L1 -1942 5866 5520 537 232 56 14 chr6 33026163 33026305 -149388937 - MLT1G LTR MaLR -1 589 442 366 23 0 0 chr6 33026310 33026353 -149388889 + (TC)n Simple_repeat Simple_repeat 1 43 0 369 237 101 8 chr6 33026469 33026594 -149388648 - MLT1H1 LTR MaLR -361 188 1 349 315 61 90 chr6 33026607 33026953 -149388289 - MLT1H1-int LTR MaLR -14 1357 1022 1922 155 3 19 chr6 33027032 33027348 -149387894 - AluSx SINE Alu -1 311 1 1862 200 49 30 chr6 33027505 33027999 -149387243 - L1 LINE L1 -1347 4799 4297 4194 212 62 13 chr6 33028018 33029503 -149385739 + L1MA10 LINE L1 4757 6323 -11 713 199 72 18 chr6 33029961 33030127 -149385115 + MLT2B1 LTR ERVL 3 177 -343 272 159 0 0 chr6 33030125 33030169 -149385073 + MLT2C2 LTR ERVL 421 464 0 * 1519 318 75 15 chr6 33030420 33031877 -149383365 + HERV16 LTR ERVL 900 2548 -3106 504 286 29 39 chr6 33031891 33032098 -149383144 - MLT1H1 LTR MaLR -338 204 1 688 299 111 0 chr6 33032180 33032387 -149382855 - MIR SINE MIR -30 232 3 9073 77 7 7 chr6 33032488 33034501 -149380741 + L1PA7 LINE L1 4141 6152 -2 710 179 26 0 chr6 33034503 33034620 -149380622 - MER45 DNA AcHobo -1453 128 9 664 324 41 5 chr6 33034798 33035017 -149380225 + MIR SINE MIR 33 259 -3 7361 241 21 16 chr6 33035054 33036703 -149378539 + L1PA12 LINE L1 2 1657 -5924 13878 226 37 21 chr6 33036752 33040438 -149374804 + L1PA12 LINE L1 2461 6206 -1378 21 57 0 0 chr6 33041323 33041358 -149373884 + AT_rich Low_complexity Low_complexity 1 35 0 1947 137 14 0 chr6 33042627 33042912 -149372330 + AluSx SINE Alu 12 300 -12 21 36 0 0 chr6 33043024 33043052 -149372190 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 33044506 33044534 -149370708 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 33045070 33045091 -149370151 + AT_rich Low_complexity Low_complexity 1 21 0 405 261 96 27 chr6 33045443 33045631 -149369611 - MLT1G LTR MaLR -1 589 389 8171 201 45 30 chr6 33045768 33048551 -149366691 + L1MA9 LINE L1 3477 6305 -7 1840 175 53 42 chr6 33048577 33049279 -149365963 + L1MCa LINE L1 1127 1927 -4499 232 172 52 0 chr6 33049286 33049344 -149365898 + L1MCa LINE L1 1998 2058 -4368 * 2214 136 5 22 chr6 33049340 33049744 -149365498 - L1P5 LINE L1 -411 5745 5349 1496 189 0 6 chr6 33049739 33050067 -149365175 + L1P5 LINE L1 5008 5333 -813 * 290 285 39 0 chr6 33050436 33050566 -149364676 + LTR67 LTR ERVL 411 545 -12 529 168 88 16 chr6 33050645 33050770 -149364472 + THE1C LTR MaLR 1 134 -241 247 300 10 30 chr6 33050783 33050883 -149364359 + MLT1J LTR MaLR 346 443 -68 292 280 0 51 chr6 33051110 33051228 -149364014 + L1MC4 LINE L1 7336 7447 -595 511 211 66 119 chr6 33051273 33051700 -149363542 + L1MC5 LINE L1 7508 7911 -50 21 57 0 0 chr6 33052091 33052126 -149363116 + AT_rich Low_complexity Low_complexity 1 35 0 2314 89 6 0 chr6 33052160 33052473 -149362769 + L1PA13 LINE L1 5844 6158 -5 191 36 36 0 chr6 33053665 33053693 -149361549 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 274 256 24 143 chr6 33054331 33054404 -149360838 - L2 LINE L2 -216 3056 3013 2557 64 0 6 chr6 33054404 33054715 -149360527 + AluY SINE Alu 1 309 -2 274 256 24 143 chr6 33054715 33054809 -149360433 - L2 LINE L2 -259 3013 2909 283 435 36 0 chr6 33055314 33055452 -149359790 - L2 LINE L2 -14 3258 3116 244 348 101 40 chr6 33055684 33055911 -149359331 - L2 LINE L2 -436 2878 2638 237 296 8 104 chr6 33056306 33056431 -149358811 - L3 LINE CR1 -42 1535 1423 1902 119 24 7 chr6 33056451 33056745 -149358497 + L1PB4 LINE L1 5852 6150 -6 24 0 0 0 chr6 33057115 33057139 -149358103 + AT_rich Low_complexity Low_complexity 1 24 0 5363 151 26 11 chr6 33058983 33060372 -149354870 - L1MA8 LINE L1 -5 6286 4874 836 158 19 0 chr6 33060369 33060527 -149354715 - L1MA8 LINE L1 -2238 3908 3748 * 2687 237 11 27 chr6 33061951 33062614 -149352628 - MER82 DNA MER2_type -1 652 1 393 294 84 8 chr6 33062620 33062739 -149352503 - MIR SINE MIR -65 143 16 3162 24 0 0 chr6 33062908 33063289 -149351953 + L1P2 LINE L1 5433 5813 -342 774 237 77 67 chr6 33063297 33063672 -149351570 - L1MC4 LINE L1 -214 7828 7450 21 36 0 0 chr6 33064018 33064046 -149351196 + AT_rich Low_complexity Low_complexity 1 28 0 199 339 27 45 chr6 33065698 33065810 -149349432 - MIR SINE MIR -128 134 25 456 316 26 94 chr6 33067403 33067524 -149347718 + MIR SINE MIR 5 133 -129 2106 118 44 0 chr6 33067524 33067845 -149347397 - L1PA15 LINE L1 -6 6159 5825 195 42 0 0 chr6 33067852 33067876 -149347366 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 456 316 26 94 chr6 33067876 33068012 -149347230 + MIR SINE MIR 139 252 -10 1597 204 58 94 chr6 33069045 33069648 -149345594 - L1ME1 LINE L1 -4 6162 5582 2327 115 19 25 chr6 33069952 33070316 -149344926 + THE1B LTR MaLR 3 364 0 360 369 12 31 chr6 33070330 33070490 -149344752 + MIR3 SINE MIR 43 199 -9 2271 100 13 0 chr6 33070935 33071234 -149344008 - AluSq SINE Alu -10 303 1 205 210 12 62 chr6 33071313 33071394 -149343848 + GA-rich Low_complexity Low_complexity 3 79 0 2484 76 0 3 chr6 33073936 33074238 -149341004 - AluSc SINE Alu -8 301 1 1216 198 72 52 chr6 33074918 33075266 -149339976 + L1MC1 LINE L1 5939 6293 -40 2196 125 0 0 chr6 33075555 33075860 -149339382 - AluSx SINE Alu -7 305 1 4604 151 52 23 chr6 33076488 33078273 -149336969 + L1PA15 LINE L1 4351 6164 -1 861 291 60 37 chr6 33078366 33079022 -149336220 + L1MEc LINE L1 1393 2063 -4333 201 122 27 68 chr6 33079077 33079151 -149336091 + A-rich Low_complexity Low_complexity 1 71 0 309 306 11 50 chr6 33079152 33079332 -149335910 + L1M3 LINE L1 8 180 -6362 290 287 51 19 chr6 33079698 33079855 -149335387 + L1M3 LINE L1 713 874 -5668 481 211 70 13 chr6 33080039 33080195 -149335047 + L1M3 LINE L1 1072 1236 -5310 351 229 115 0 chr6 33080217 33080313 -149334929 + MLT2B3 LTR ERVL 125 231 -323 738 245 137 19 chr6 33080313 33080635 -149334607 + L1ME3A LINE L1 5400 5759 -407 538 232 0 7 chr6 33080634 33080772 -149334470 + L1M3 LINE L1 5295 5431 -1213 * 281 29 0 0 chr6 33080825 33080860 -149334382 + U2 snRNA snRNA 1 35 -153 1167 208 85 11 chr6 33080890 33081370 -149333872 + L1M3 LINE L1 5434 5941 -721 940 179 73 5 chr6 33081362 33081554 -149333688 + L1MA9 LINE L1 6041 6251 -61 * 1903 107 7 4 chr6 33081554 33081824 -149333418 + AluSx SINE Alu 38 308 -4 940 179 73 5 chr6 33081824 33081849 -149333393 + L1MA9 LINE L1 6251 6273 -39 2101 133 3 0 chr6 33081867 33082160 -149333082 + AluSx SINE Alu 1 294 -18 2402 39 43 0 chr6 33082160 33082441 -149332801 + AluY SINE Alu 1 294 -17 236 213 0 0 chr6 33082456 33082503 -149332739 + L1M3 LINE L1 5923 5969 -709 * 541 185 15 0 chr6 33082499 33082629 -149332613 + L1ME2 LINE L1 5611 5742 -422 1187 257 73 75 chr6 33082637 33083197 -149332045 - MLT1F1 LTR MaLR -8 559 1 1598 199 38 28 chr6 33083197 33083619 -149331623 + L1ME2 LINE L1 5738 6163 -1 534 288 95 31 chr6 33084093 33084315 -149330927 + MIR SINE MIR 14 249 -13 443 279 121 6 chr6 33084559 33084724 -149330518 + MIR SINE MIR 50 233 -29 312 285 168 74 chr6 33085113 33085369 -149329873 + L1ME3A LINE L1 5888 6167 -3 24 0 0 0 chr6 33086108 33086132 -149329110 + AT_rich Low_complexity Low_complexity 1 24 0 2077 106 0 47 chr6 33086137 33086438 -149328804 - AluSq SINE Alu -26 287 1 275 288 88 40 chr6 33086438 33086688 -149328554 + L1MC4 LINE L1 7748 8009 -33 21 57 0 0 chr6 33086697 33086732 -149328510 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 33086871 33086892 -149328350 + AT_rich Low_complexity Low_complexity 1 21 0 202 229 16 16 chr6 33088764 33088825 -149326417 + GA-rich Low_complexity Low_complexity 1 61 0 2558 221 25 7 chr6 33088992 33089544 -149325698 + REP3 LTR ERV 1 562 0 1671 202 23 8 chr6 33089590 33089941 -149325301 - MLT1A1 LTR MaLR -3 362 7 554 265 50 42 chr6 33090886 33091205 -149324037 + L1MEc LINE L1 1883 2168 -4372 3947 145 28 2 chr6 33091325 33091944 -149323298 + MER41B LTR ERV1 1 635 0 3825 246 27 55 chr6 33091946 33093119 -149322123 + L1M4 LINE L1 2 1141 -5401 1469 168 15 4 chr6 33093260 33093522 -149321720 + MLT1B LTR MaLR 115 379 -11 1929 261 21 26 chr6 33094627 33095282 -149319960 - L1M4 LINE L1 -866 5280 4629 1146 211 42 50 chr6 33095321 33095658 -149319584 + L1M4 LINE L1 4283 4616 -2028 581 322 15 18 chr6 33095690 33096016 -149319226 - L1MEc LINE L1 -4621 1775 1451 349 267 85 28 chr6 33096049 33096225 -149319017 + L1M4 LINE L1 5245 5430 -1214 1203 219 46 63 chr6 33096713 33097170 -149318072 + Charlie1b DNA MER1_type 37 485 -38 1388 215 56 24 chr6 33097844 33098201 -149317041 + MLT1B LTR MaLR 25 396 0 1462 47 0 0 chr6 33099833 33100005 -149315237 - L1PA4 LINE L1 -591 5564 5393 5104 41 0 3 chr6 33100005 33100653 -149314589 + L1PA4 LINE L1 5545 6155 0 270 247 282 34 chr6 33102450 33102741 -149312501 + L2 LINE L2 2912 3274 -39 311 300 0 11 chr6 33102964 33103054 -149312188 - MER81 DNA DNA -22 92 4 2194 179 11 0 chr6 33103238 33103613 -149311629 + MLT1B LTR MaLR 1 379 -11 1417 199 52 0 chr6 33104753 33105080 -149310162 - L1MB5 LINE L1 -10 6164 5821 21 0 0 0 chr6 33105386 33105407 -149309835 + AT_rich Low_complexity Low_complexity 1 21 0 7209 78 7 40 chr6 33106774 33108571 -149306671 - L1PA7 LINE L1 -1 6153 4428 403 276 28 11 chr6 33108573 33108704 -149306538 - FRAM SINE Alu -9 157 55 302 320 55 20 chr6 33109046 33109246 -149305996 - MLT1L LTR MaLR -5 610 404 21 0 0 0 chr6 33111289 33111310 -149303932 + AT_rich Low_complexity Low_complexity 1 21 0 417 335 43 0 chr6 33112091 33112276 -149302966 - MIR SINE MIR -51 211 19 2324 100 0 7 chr6 33114202 33114503 -149300739 - AluSg SINE Alu -11 299 1 24 0 0 0 chr6 33114834 33114858 -149300384 + AT_rich Low_complexity Low_complexity 1 24 0 207 207 37 44 chr6 33114929 33115064 -149300178 + (TTATA)n Simple_repeat Simple_repeat 2 135 0 21 36 0 0 chr6 33115095 33115123 -149300119 + AT_rich Low_complexity Low_complexity 1 28 0 24 100 0 0 chr6 33115615 33115695 -149299547 + AT_rich Low_complexity Low_complexity 1 80 0 248 178 32 70 chr6 33115745 33115930 -149299312 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 29 60 0 0 chr6 33115967 33116017 -149299225 + AT_rich Low_complexity Low_complexity 1 50 0 207 302 112 15 chr6 33116272 33116477 -149298765 - L2 LINE L2 -167 3146 2922 3651 180 13 28 chr6 33117682 33118105 -149297137 + L1MB1 LINE L1 5408 5817 -351 2153 121 3 0 chr6 33118105 33118394 -149296848 + AluSg SINE Alu 1 290 -20 3651 180 13 28 chr6 33118394 33118681 -149296561 + L1MB1 LINE L1 5817 6107 -61 415 272 48 7 chr6 33118698 33118845 -149296397 + MIR SINE MIR 97 249 -13 497 292 83 35 chr6 33118876 33119310 -149295932 - L2 LINE L2 -137 3176 2712 1280 180 6 84 chr6 33119310 33119633 -149295609 - AluJb SINE Alu -14 298 1 497 292 83 35 chr6 33119633 33119657 -149295585 - L2 LINE L2 -601 2712 2691 289 185 36 0 chr6 33119657 33119719 -149295523 + L1MB1 LINE L1 6103 6166 -2 1670 156 184 19 chr6 33123226 33123591 -149291651 + MSTA LTR MaLR 1 425 -3 257 200 50 100 chr6 33124061 33124141 -149291101 - L1ME LINE L1 -476 5694 5619 658 129 89 0 chr6 33124232 33124356 -149290886 - L1MD1 LINE L1 0 6242 6108 3472 264 27 17 chr6 33124356 33125738 -149289504 - L1 LINE L1 -3115 4450 3045 1317 118 0 0 chr6 33125738 33125916 -149289326 - LTR1 LTR ERV1 0 785 608 1235 191 107 105 chr6 33128759 33129188 -149286054 - MLT1C LTR MaLR -4 463 34 489 237 23 0 chr6 33129632 33129763 -149285479 + MER94 DNA DNA 1 134 0 1952 182 14 6 chr6 33130067 33130429 -149284813 - MLT1A1 LTR MaLR 0 365 1 1415 234 89 30 chr6 33134587 33135023 -149280219 - MLT1C LTR MaLR 0 467 6 188 235 39 0 chr6 33135365 33135416 -149279826 - MIR SINE MIR -62 146 94 241 207 12 24 chr6 33136045 33136127 -149279115 - L1M4 LINE L1 -3166 2980 2900 572 286 48 31 chr6 33136873 33137336 -149277906 + HERV16 LTR ERVL 596 1091 -3905 2340 112 21 21 chr6 33137740 33138115 -149277127 - THE1C LTR MaLR 0 375 1 2181 134 0 7 chr6 33138153 33138460 -149276782 + AluSx SINE Alu 2 306 -6 2060 159 105 0 chr6 33138551 33138904 -149276338 + MLT1B LTR MaLR 1 390 0 237 342 0 0 chr6 33139266 33139345 -149275897 + MIR SINE MIR 20 98 -164 1709 222 28 8 chr6 33139576 33139597 -149275645 + L1MB7 LINE L1 5767 5786 -398 2024 202 60 14 chr6 33139597 33140043 -149275199 + MLT1C LTR MaLR 1 467 0 1709 222 28 8 chr6 33140043 33140418 -149274824 + L1MB7 LINE L1 5786 6171 -13 336 376 64 0 chr6 33140765 33140906 -149274336 + L2 LINE L2 3116 3265 -7 1901 231 29 58 chr6 33141159 33141336 -149273906 + L1ME1 LINE L1 4759 4940 -1226 2267 91 7 10 chr6 33141336 33141645 -149273597 - AluSg1 SINE Alu -1 308 1 1901 231 29 58 chr6 33141645 33142609 -149272633 + L1ME1 LINE L1 4940 5838 -328 1925 195 40 5 chr6 33142637 33143032 -149272210 - L1MB1 LINE L1 -41 6127 5719 224 241 139 46 chr6 33143437 33143545 -149271697 + MIR3 SINE MIR 38 155 -53 244 224 17 0 chr6 33143841 33143899 -149271343 + (CA)n Simple_repeat Simple_repeat 2 60 0 256 277 78 43 chr6 33144249 33144390 -149270852 - MIR SINE MIR -36 226 81 1288 174 38 38 chr6 33145941 33146234 -149269008 - MER9 LTR ERVK 0 511 219 924 208 46 63 chr6 33147294 33147578 -149267664 + L1MC/D LINE L1 5479 5757 -2028 24 32 0 0 chr6 33147673 33147704 -149267538 + AT_rich Low_complexity Low_complexity 1 31 0 254 83 0 42 chr6 33147712 33147760 -149267482 + PABL_A-int LTR ERV1 3294 3339 -1676 8524 140 59 53 chr6 33147778 33149427 -149265815 - MER4C-int LTR ERV1 -1798 4800 3164 1539 185 0 21 chr6 33149427 33149713 -149265529 - AluJb SINE Alu -20 292 13 8524 140 59 53 chr6 33149713 33150334 -149264908 - MER4C-int LTR ERV1 -3434 3164 1506 372 104 78 26 chr6 33150321 33150398 -149264844 - MER4C-int LTR ERV1 -5484 1114 1034 * 2012 206 168 0 chr6 33150398 33150921 -149264321 + LTR36 LTR ERV1 1 611 0 2053 144 129 85 chr6 33150921 33151766 -149263476 - MER4C-int LTR ERV1 -5561 1037 121 4540 146 17 20 chr6 33151767 33152480 -149262762 - MER50 LTR ERV1 -23 711 1 504 119 165 28 chr6 33152480 33152504 -149262738 - MER4C-int LTR ERV1 -6474 124 105 1794 161 0 13 chr6 33152504 33152815 -149262427 + AluJb SINE Alu 1 307 -5 504 119 165 28 chr6 33152815 33152899 -149262343 - MER4C-int LTR ERV1 -6493 105 1 2444 119 112 5 chr6 33152902 33153322 -149261920 - MER4C LTR ERV1 0 465 1 290 261 87 65 chr6 33158472 33158702 -149256540 - SN5 Other centromeric -220 235 1 260 185 0 15 chr6 33159901 33159966 -149255276 + CT-rich Low_complexity Low_complexity 4 67 0 180 245 0 0 chr6 33160178 33160231 -149255011 + (TG)n Simple_repeat Simple_repeat 1 53 0 1631 180 3 22 chr6 33160564 33160881 -149254361 + AluJb SINE Alu 1 311 -1 1773 254 56 13 chr6 33161401 33162007 -149253235 - L1M4 LINE L1 -865 5281 4650 1136 230 29 71 chr6 33162062 33162444 -149252798 + L1M4 LINE L1 3785 4150 -1996 591 264 76 44 chr6 33162444 33162758 -149252484 - L1MCa LINE L1 -4617 1990 1474 324 266 11 11 chr6 33162789 33162883 -149252359 + L1M4 LINE L1 4745 4838 -1308 221 318 47 28 chr6 33163013 33163120 -149252122 + MIR SINE MIR 144 252 -10 2302 126 113 13 chr6 33163224 33163613 -149251629 + MSTA LTR MaLR 1 428 0 186 302 222 5 chr6 33165111 33165300 -149249942 + L2 LINE L2 2845 3074 -239 501 270 0 0 chr6 33165714 33165825 -149249417 - MER81 DNA DNA -1 113 3 2092 167 27 3 chr6 33166010 33166375 -149248867 + MLT1B LTR MaLR 1 374 -16 1418 230 18 0 chr6 33167503 33167846 -149247396 - L1MB5 LINE L1 -9 6165 5817 2211 103 3 0 chr6 33168837 33169137 -149246105 - AluSp SINE Alu -12 301 1 4025 240 66 12 chr6 33169738 33171085 -149244157 - L1M4 LINE L1 -2507 3639 2220 3283 254 109 21 chr6 33171099 33171247 -149243995 + L1M4c LINE L1 906 1040 -5344 2708 19 0 0 chr6 33171247 33171558 -149243684 + AluYa5 SINE Alu 1 311 0 3283 254 109 21 chr6 33171558 33172824 -149242418 + L1M4c LINE L1 1040 2444 -3940 1326 135 4 58 chr6 33172816 33173076 -149242166 + L1MA5 LINE L1 5814 6059 -241 * 2867 130 2 14 chr6 33173073 33173497 -149241745 + L1P3 LINE L1 1 419 -6042 1058 197 19 5 chr6 33173510 33173718 -149241524 + MER20 DNA MER1_type 1 211 -8 4439 261 138 26 chr6 33173745 33174432 -149240810 - L2 LINE L2 -537 2777 2168 1719 176 90 9 chr6 33174432 33174778 -149240464 - MLT1A2 LTR MaLR 0 374 1 4439 261 138 26 chr6 33174778 33175715 -149239527 - L2 LINE L2 -1146 2168 971 535 256 63 19 chr6 33175732 33175939 -149239303 - L2 LINE L2 -2571 743 528 279 279 0 0 chr6 33175994 33176062 -149239180 - MIR SINE MIR -110 152 85 212 242 153 48 chr6 33177348 33177472 -149237770 + MIR SINE MIR 71 207 -55 182 211 77 39 chr6 33177568 33177620 -149237622 - L2 LINE L2 -3 3269 3216 * 839 206 180 0 chr6 33177596 33177790 -149237452 - MIR SINE MIR -27 235 7 187 191 0 48 chr6 33178149 33178191 -149237051 - L3 LINE CR1 -20 1557 1518 * 410 306 35 21 chr6 33178159 33178303 -149236939 - MIR3 SINE MIR -32 176 31 1099 235 35 53 chr6 33178458 33178777 -149236465 - MER93a LTR ERV1 0 402 90 272 402 9 0 chr6 33178894 33179006 -149236236 + L3 LINE CR1 988 1100 -477 195 114 0 0 chr6 33180787 33180822 -149234420 + (GA)n Simple_repeat Simple_repeat 1 35 0 309 220 99 11 chr6 33182441 33182532 -149232710 + MARNA DNA Mariner 154 252 -334 5229 172 20 19 chr6 33182542 33182629 -149232613 + MER49 LTR ERV1 10 95 -828 1891 152 0 0 chr6 33182629 33182931 -149232311 + AluSx SINE Alu 1 302 -10 5229 172 20 19 chr6 33182931 33183756 -149231486 + MER49 LTR ERV1 95 923 0 6323 62 5 0 chr6 33184168 33184944 -149230298 + LTR17 LTR ERV1 1 780 0 185 346 103 0 chr6 33185947 33186025 -149229217 + L2 LINE L2 2208 2293 -1021 253 345 86 83 chr6 33186069 33186443 -149228799 + L2 LINE L2 2898 3272 0 2011 172 9 0 chr6 33186580 33186929 -149228313 - MER47A DNA MER2_type 0 366 15 2311 192 24 2 chr6 33187485 33187902 -149227340 - MSTB LTR MaLR 0 426 1 4475 116 8 0 chr6 33187938 33188568 -149226674 + MER41B LTR ERV1 1 635 0 390 269 141 39 chr6 33188919 33189075 -149226167 + L1ME3A LINE L1 5725 5896 -274 3423 140 11 9 chr6 33189086 33189629 -149225613 - LTR10A LTR ERV1 -65 544 1 201 208 0 21 chr6 33190077 33190125 -149225117 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 21 0 0 0 chr6 33190156 33190177 -149225065 + AT_rich Low_complexity Low_complexity 1 21 0 290 263 16 97 chr6 33190177 33190245 -149224997 + L1ME LINE L1 5592 5664 -457 1746 123 49 3 chr6 33190245 33190406 -149224836 - AluSx SINE Alu -15 297 116 233 29 0 29 chr6 33190406 33190441 -149224801 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1746 123 49 3 chr6 33190441 33190563 -149224679 - AluSx SINE Alu -196 116 1 290 263 16 97 chr6 33190563 33190700 -149224542 + L1ME LINE L1 5664 5740 -381 352 276 66 44 chr6 33191737 33192073 -149223169 + L1ME LINE L1 1383 1534 -4889 2205 135 55 32 chr6 33192073 33192573 -149222669 + Tigger2 DNA MER2_type 3 563 -2155 2052 113 20 17 chr6 33192573 33192874 -149222368 - AluSx SINE Alu -8 304 3 2205 135 55 32 chr6 33192874 33193060 -149222182 + Tigger2 DNA MER2_type 563 743 -1975 1662 151 0 4 chr6 33193126 33193385 -149221857 + Tigger2 DNA MER2_type 2461 2718 0 1613 251 52 12 chr6 33193386 33193884 -149221358 + L1MC4a LINE L1 6706 7223 -585 2044 199 79 49 chr6 33193899 33194309 -149220933 + L1ME2 LINE L1 5269 5665 -499 759 78 0 0 chr6 33194309 33194412 -149220830 + (TTC)n Simple_repeat Simple_repeat 2 104 0 1734 129 8 8 chr6 33194418 33194674 -149220568 - AluJb SINE Alu -52 260 5 2044 199 79 49 chr6 33194674 33194865 -149220377 + L1ME2 LINE L1 5669 5895 -269 1798 157 64 0 chr6 33194872 33195152 -149220090 + AluJo SINE Alu 1 298 -14 849 243 80 21 chr6 33195161 33195400 -149219842 - L1ME2 LINE L1 -9 6155 5903 674 68 0 78 chr6 33195425 33195528 -149219714 - AluJb SINE Alu -9 303 209 242 236 0 0 chr6 33195535 33195590 -149219652 + L1ME3 LINE L1 6100 6154 -8 1885 174 0 3 chr6 33195595 33195899 -149219343 - AluJo SINE Alu -7 305 3 536 206 37 15 chr6 33195913 33196049 -149219193 + L1ME2 LINE L1 5813 5951 -213 455 228 189 0 chr6 33196056 33196183 -149219059 + L1ME2 LINE L1 6005 6155 -9 424 267 96 41 chr6 33196663 33196809 -149218433 + MIR SINE MIR 29 182 -80 592 309 92 0 chr6 33197084 33197301 -149217941 + MIR SINE MIR 20 256 -6 182 100 0 0 chr6 33198163 33198193 -149217049 + L2 LINE L2 3026 3055 -217 939 263 29 24 chr6 33198437 33198878 -149216364 + L1MC4 LINE L1 7610 8041 -1 26 30 0 0 chr6 33201009 33201042 -149214200 + AT_rich Low_complexity Low_complexity 1 33 0 2496 81 3 0 chr6 33201167 33201475 -149213767 - AluSx SINE Alu -3 309 1 201 308 48 29 chr6 33201550 33201654 -149213588 - MIR SINE MIR -78 130 25 1241 282 55 10 chr6 33202207 33202590 -149212652 - MLT1I LTR MaLR -7 402 3 233 337 68 22 chr6 33202590 33202919 -149212323 + L2 LINE L2 2631 2973 -299 255 341 68 0 chr6 33203010 33203098 -149212144 + L2 LINE L2 3208 3301 -12 858 249 6 6 chr6 33203099 33203276 -149211966 + MER8 DNA MER2_type 1 177 -62 204 40 0 0 chr6 33203790 33203815 -149211427 + (TG)n Simple_repeat Simple_repeat 2 26 0 473 228 0 22 chr6 33204254 33204346 -149210896 + MER21B LTR ERV1 1 90 -773 2820 231 82 43 chr6 33204368 33205094 -149210148 + MER21B LTR ERV1 19 780 -83 2382 69 0 3 chr6 33205094 33205420 -149209822 + AluY SINE Alu 1 325 0 2820 231 82 43 chr6 33205420 33205458 -149209784 + MER21B LTR ERV1 780 815 -48 2350 318 42 57 chr6 33205558 33206277 -149208965 - HERVL LTR ERVL -1375 4279 3589 1734 244 72 17 chr6 33206277 33206801 -149208441 + MLT1H1 LTR MaLR 3 555 0 2350 318 42 57 chr6 33206801 33207422 -149207820 - HERVL LTR ERVL -2065 3589 2960 272 200 0 0 chr6 33207625 33207670 -149207572 - MER63 DNA MER1_type -254 806 762 274 390 12 0 chr6 33207734 33207903 -149207339 - HERVL LTR ERVL -2857 2907 2737 831 225 115 16 chr6 33207922 33208166 -149207076 - MER63 DNA MER1_type 0 1060 793 688 258 0 19 chr6 33209017 33209172 -149206070 - MER63 DNA MER1_type -237 825 674 2258 112 7 0 chr6 33209340 33209636 -149205606 + AluSg SINE Alu 1 298 -12 851 330 71 21 chr6 33209675 33210054 -149205188 - HERVL LTR ERVL -3245 2519 2122 345 328 25 8 chr6 33210741 33210863 -149204379 + MIR SINE MIR 31 154 -108 485 287 64 35 chr6 33210884 33211086 -149204156 + MER63A DNA MER1_type 1 208 -2 330 333 60 0 chr6 33211357 33211507 -149203735 + MIR SINE MIR 32 190 -72 188 148 204 0 chr6 33211614 33211668 -149203574 + L2 LINE L2 3246 3310 -3 213 294 29 0 chr6 33211692 33211760 -149203482 + GA-rich Low_complexity Low_complexity 3 72 0 806 182 31 0 chr6 33211956 33212115 -149203127 + L1MB7 LINE L1 6005 6168 -16 2226 113 17 0 chr6 33212145 33212446 -149202796 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr6 33212577 33212607 -149202635 + AT_rich Low_complexity Low_complexity 1 30 0 227 239 0 0 chr6 33212923 33212969 -149202273 + L2 LINE L2 3026 3071 -201 238 246 18 0 chr6 33213502 33213559 -149201683 + L2 LINE L2 3256 3313 0 238 350 50 0 chr6 33215261 33215361 -149199881 - MIR SINE MIR -73 135 31 2241 113 9 14 chr6 33215713 33216059 -149199183 - MER47A DNA MER2_type 0 366 23 601 213 126 6 chr6 33216063 33216237 -149199005 - MIR SINE MIR -52 210 16 246 105 0 0 chr6 33216544 33216582 -149198660 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 2101 86 32 18 chr6 33216928 33217207 -149198035 + AluSg SINE Alu 1 283 -27 3323 147 27 52 chr6 33217821 33218280 -149196962 + LTR39 LTR ERV1 1 470 -313 1108 194 163 4 chr6 33218280 33218538 -149196704 - AluJo SINE Alu -3 299 1 3323 147 27 52 chr6 33218538 33218619 -149196623 + LTR39 LTR ERV1 470 552 -231 2093 100 14 17 chr6 33218619 33218910 -149196332 + AluY SINE Alu 1 290 -21 3323 147 27 52 chr6 33218910 33218979 -149196263 + LTR39 LTR ERV1 552 597 -186 1875 181 0 0 chr6 33218979 33219282 -149195960 - AluJb SINE Alu -9 303 1 3323 147 27 52 chr6 33219282 33219304 -149195938 + LTR39 LTR ERV1 597 618 -165 4107 138 67 3 chr6 33219313 33219981 -149195261 + MER50 LTR ERV1 13 723 -11 851 239 11 6 chr6 33220004 33220184 -149195058 + LTR39 LTR ERV1 603 783 0 1049 168 37 0 chr6 33220511 33220529 -149194713 + AluSg/x SINE Alu 112 128 -184 198 0 0 0 chr6 33220529 33220551 -149194691 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1049 168 37 0 chr6 33220551 33220723 -149194519 + AluSg/x SINE Alu 128 309 -3 682 235 67 48 chr6 33220857 33221172 -149194070 + MER34C LTR ERV1 37 357 -228 726 170 59 0 chr6 33221241 33221376 -149193866 + Tigger2 DNA MER2_type 13 155 -2563 1688 159 0 0 chr6 33221378 33221635 -149193607 + AluJb SINE Alu 1 257 -55 2070 100 14 7 chr6 33221654 33221955 -149193287 + AluY SINE Alu 1 303 0 4921 109 52 29 chr6 33221972 33222788 -149192454 + MER4D LTR ERV1 1 903 0 3116 141 71 18 chr6 33222789 33222865 -149192377 + Tigger2 DNA MER2_type 174 244 -2474 1602 174 4 4 chr6 33222865 33223129 -149192113 + AluJb SINE Alu 34 297 -15 3116 141 71 18 chr6 33223129 33223612 -149191630 + Tigger2 DNA MER2_type 244 763 -1955 1458 182 4 0 chr6 33223666 33223908 -149191334 + Tigger2 DNA MER2_type 2475 2717 -1 2225 116 0 0 chr6 33223922 33224223 -149191019 - AluSx SINE Alu -11 301 1 457 212 47 36 chr6 33224224 33224413 -149190829 + MER34C LTR ERV1 368 542 0 1017 267 156 51 chr6 33225099 33225630 -149189612 + MLT1G1 LTR MaLR 1 587 -8 21 0 0 0 chr6 33226210 33226231 -149189011 + AT_rich Low_complexity Low_complexity 1 21 0 261 139 0 0 chr6 33226234 33226277 -149188965 + (TG)n Simple_repeat Simple_repeat 2 44 0 815 216 181 12 chr6 33226347 33226606 -149188636 + Cheshire DNA MER1_type 2063 2365 -55 2372 87 23 0 chr6 33226822 33227122 -149188120 - AluSg1 SINE Alu -2 307 1 382 309 123 18 chr6 33227766 33227986 -149187256 - MIR SINE MIR -8 254 12 207 234 47 0 chr6 33229417 33229481 -149185761 + C-rich Low_complexity Low_complexity 4 70 0 207 194 42 28 chr6 33229681 33229753 -149185489 + GA-rich Low_complexity Low_complexity 5 77 0 457 233 71 36 chr6 33230036 33230379 -149184863 + LTR16A1 LTR ERVL 22 456 -1 410 262 41 0 chr6 33231226 33231348 -149183894 + MIR SINE MIR 86 212 -50 227 350 75 12 chr6 33233520 33233760 -149181482 + L2 LINE L2 2837 3091 -181 214 284 0 30 chr6 33235328 33235395 -149179847 + GA-rich Low_complexity Low_complexity 2 66 0 788 176 7 7 chr6 33236241 33236383 -149178859 + L1PB4 LINE L1 6015 6156 0 21 36 0 0 chr6 33236383 33236411 -149178831 + AT_rich Low_complexity Low_complexity 1 28 0 209 299 82 0 chr6 33237135 33237232 -149178010 - L3b LINE CR1 -88 1495 1391 2100 104 3 54 chr6 33237936 33238252 -149176990 - AluSg SINE Alu -10 300 1 198 345 78 9 chr6 33238807 33238923 -149176319 + MIR3 SINE MIR 78 201 -7 186 363 35 18 chr6 33240105 33240218 -149175024 + MIR SINE MIR 27 141 -67 214 175 25 0 chr6 33240355 33240395 -149174847 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 1822 134 32 0 chr6 33240645 33240929 -149174313 + L1MC1 LINE L1 6028 6320 -13 1922 141 7 26 chr6 33240940 33241244 -149173998 + AluSx SINE Alu 1 298 -14 2157 123 7 0 chr6 33241265 33241565 -149173677 + AluSx SINE Alu 1 302 -10 1249 163 21 118 chr6 33241569 33241722 -149173520 + AluJo SINE Alu 2 168 -134 2139 101 0 39 chr6 33241722 33241856 -149173386 + AluSg SINE Alu 1 139 -171 2426 76 3 0 chr6 33241856 33242157 -149173085 + AluSp SINE Alu 1 302 -11 2139 101 0 39 chr6 33242157 33242328 -149172914 + AluSg SINE Alu 139 294 -16 1249 163 21 118 chr6 33242328 33242340 -149172902 + AluJo SINE Alu 168 180 -122 2046 145 0 3 chr6 33242340 33242637 -149172605 + AluSg SINE Alu 1 296 -14 1249 163 21 118 chr6 33242637 33242802 -149172440 + AluJo SINE Alu 180 301 -1 1192 30 0 0 chr6 33242802 33242934 -149172308 + AluY SINE Alu 1 132 -179 185 312 52 0 chr6 33242986 33243063 -149172179 + MIR SINE MIR 74 154 -108 2413 104 3 0 chr6 33243226 33243535 -149171707 - AluSg SINE Alu 0 310 1 180 339 137 22 chr6 33243536 33243719 -149171523 + L2 LINE L2 2274 2477 -837 195 129 0 0 chr6 33243755 33243786 -149171456 + (ATG)n Simple_repeat Simple_repeat 1 31 0 * 715 251 63 26 chr6 33243780 33243971 -149171271 - MIR SINE MIR -1 261 64 795 164 28 79 chr6 33244696 33244873 -149170369 - MER20 DNA MER1_type -1 218 51 918 226 16 5 chr6 33244921 33245107 -149170135 + MER5A DNA MER1_type 2 189 0 762 165 8 15 chr6 33245458 33245591 -149169651 - FLAM_C SINE Alu -1 132 1 506 274 67 18 chr6 33246008 33246172 -149169070 + MIR SINE MIR 13 184 -78 252 93 37 19 chr6 33248766 33248820 -149166422 + CT-rich Low_complexity Low_complexity 1 55 0 339 217 14 14 chr6 33252003 33252072 -149163170 + MER5A DNA MER1_type 119 187 -2 331 335 0 22 chr6 33253956 33254181 -149161061 + G-rich Low_complexity Low_complexity 1 220 0 316 147 160 0 chr6 33255294 33255369 -149159873 - MER69 DNA AcHobo -2 2524 2438 549 247 29 47 chr6 33255371 33255541 -149159701 - MER69 DNA AcHobo -1059 167 1 26 0 0 0 chr6 33258259 33258285 -149156957 + GC_rich Low_complexity Low_complexity 1 26 0 249 182 15 45 chr6 33258849 33258915 -149156327 + C-rich Low_complexity Low_complexity 4 67 0 235 248 0 75 chr6 33259012 33259145 -149156097 + G-rich Low_complexity Low_complexity 4 126 0 378 0 0 0 chr6 33259911 33259953 -149155289 + (TG)n Simple_repeat Simple_repeat 2 43 0 1992 209 95 62 chr6 33260106 33260187 -149155055 - MER20B DNA MER1_type -4 779 702 1920 102 44 18 chr6 33260187 33260462 -149154780 + AluSx SINE Alu 14 295 -17 1992 209 95 62 chr6 33260462 33261054 -149154188 - MER20B DNA MER1_type -81 702 84 1778 96 12 20 chr6 33261057 33261307 -149153935 + AluSp SINE Alu 60 307 -6 2258 120 0 19 chr6 33262445 33262761 -149152481 - AluSq SINE Alu -3 310 1 2175 79 10 26 chr6 33263349 33263703 -149151539 - AluSg SINE Alu 0 310 1 242 375 42 7 chr6 33263867 33264011 -149151231 - MIR SINE MIR -67 195 47 222 37 0 0 chr6 33264099 33264126 -149151116 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2351 63 0 3 chr6 33264128 33264412 -149150830 - AluY SINE Alu -28 283 1 2402 72 3 16 chr6 33264812 33265116 -149150126 + AluY SINE Alu 1 300 -11 1810 132 108 41 chr6 33265193 33265535 -149149707 - MLT1A1 LTR MaLR 0 365 1 2183 102 17 0 chr6 33265979 33266274 -149148968 + AluSp SINE Alu 2 301 -12 526 174 97 121 chr6 33266651 33266858 -149148384 - MER46C DNA MER2_type -136 202 1 1817 121 7 85 chr6 33266973 33267307 -149147935 + AluSx SINE Alu 1 310 0 413 246 77 23 chr6 33267710 33267840 -149147402 - MIR SINE MIR -111 151 15 317 355 103 0 chr6 33267830 33268064 -149147178 + L2 LINE L2 2855 3112 -160 * 292 91 0 36 chr6 33268108 33268163 -149147079 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 1201 92 7 0 chr6 33268187 33268339 -149146903 + AluSx SINE Alu 5 157 -155 291 114 0 0 chr6 33268361 33268405 -149146837 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 1310 158 10 5 chr6 33268414 33268623 -149146619 + AluJb SINE Alu 88 297 -15 277 268 37 37 chr6 33268664 33268746 -149146496 + L2 LINE L2 3168 3249 -64 410 299 79 6 chr6 33268962 33269139 -149146103 - MIR SINE MIR 0 262 73 207 0 0 0 chr6 33269748 33269771 -149145471 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1818 155 54 0 chr6 33269773 33270050 -149145192 - AluSx SINE Alu -20 292 1 194 229 36 84 chr6 33270369 33270452 -149144790 + L2 LINE L2 1352 1430 -1884 2163 123 14 0 chr6 33270491 33270784 -149144458 - AluSx SINE Alu -15 297 1 1113 200 140 4 chr6 33270993 33271126 -149144116 - AluSp SINE Alu -2 301 187 1818 113 20 4 chr6 33271126 33271374 -149143868 - AluSx SINE Alu -60 252 1 1113 200 140 4 chr6 33271374 33271505 -149143737 - AluSp SINE Alu -116 187 1 716 169 73 0 chr6 33271614 33271767 -149143475 + FLAM_C SINE Alu 1 162 0 2254 121 0 3 chr6 33271768 33272073 -149143169 + AluSg SINE Alu 1 304 -6 225 65 0 0 chr6 33272140 33272171 -149143071 + (TA)n Simple_repeat Simple_repeat 2 32 0 1702 153 35 0 chr6 33272174 33272428 -149142814 - AluSx SINE Alu -49 263 1 2065 76 36 11 chr6 33272514 33272812 -149142430 + AluY SINE Alu 1 305 0 1290 181 0 5 chr6 33272985 33273189 -149142053 - AluSx SINE Alu -109 203 1 325 258 31 47 chr6 33273653 33273781 -149141461 + MIR SINE MIR 64 189 -73 1065 66 0 29 chr6 33274255 33274392 -149140850 + AluSg SINE Alu 2 134 -176 2103 88 41 17 chr6 33274392 33274686 -149140556 + AluSc SINE Alu 1 301 -8 276 231 130 0 chr6 33274861 33274969 -149140273 - L2 LINE L2 0 3313 3192 399 257 47 74 chr6 33275010 33275122 -149140120 - MIR SINE MIR -35 227 118 2538 60 7 3 chr6 33275122 33275424 -149139818 + AluSp SINE Alu 1 303 -10 399 257 47 74 chr6 33275424 33275459 -149139783 - MIR SINE MIR -144 118 84 479 225 107 53 chr6 33276328 33276515 -149138727 - L3 LINE CR1 -116 1461 1265 2625 58 0 6 chr6 33276815 33277128 -149138114 + AluY SINE Alu 1 311 0 2357 84 10 3 chr6 33277136 33277447 -149137795 + AluSq SINE Alu 1 313 0 410 305 93 7 chr6 33277782 33277933 -149137309 - MIR SINE MIR -2 260 97 1260 211 11 15 chr6 33278014 33278284 -149136958 + MER45C DNA AcHobo 1 269 -684 601 213 48 132 chr6 33278358 33278454 -149136788 + MER45C DNA AcHobo 703 806 -775 2581 61 0 3 chr6 33278454 33278766 -149136476 + AluY SINE Alu 1 311 0 601 213 48 132 chr6 33278766 33278875 -149136367 + MER45C DNA AcHobo 806 882 -699 731 169 0 0 chr6 33278875 33278993 -149136249 - FLAM_C SINE Alu -15 118 1 601 213 48 132 chr6 33278993 33279059 -149136183 + MER45C DNA AcHobo 882 952 -1 300 311 25 8 chr6 33279177 33279299 -149135943 + L2 LINE L2 3190 3313 0 382 250 56 7 chr6 33279339 33279483 -149135759 + L1MC4a LINE L1 5722 5872 -1936 594 144 0 0 chr6 33279692 33279782 -149135460 - FRAM SINE Alu -23 153 64 1399 183 88 14 chr6 33280191 33280476 -149134766 + AluJb SINE Alu 1 306 -6 2368 81 14 0 chr6 33280664 33280960 -149134282 - AluSp SINE Alu -13 300 1 900 242 53 25 chr6 33281172 33281416 -149133826 + MIR SINE MIR 12 262 0 936 235 35 0 chr6 33281951 33282151 -149133091 + MER3 DNA MER1_type 3 209 0 189 0 0 0 chr6 33283189 33283210 -149132032 + (TCC)n Simple_repeat Simple_repeat 1 21 0 1959 88 6 91 chr6 33283423 33283741 -149131501 - AluSc SINE Alu -18 291 1 1046 118 0 0 chr6 33283741 33283877 -149131365 - AluSq/x SINE Alu -177 136 1 491 253 43 12 chr6 33283909 33284071 -149131171 + MIR SINE MIR 89 255 -7 2015 118 12 56 chr6 33284764 33285085 -149130157 + AluSq SINE Alu 1 307 -6 337 335 36 22 chr6 33285673 33285951 -149129291 + L1MC4a LINE L1 5610 5891 -1917 779 143 40 109 chr6 33285982 33286157 -149129085 + FRAM SINE Alu 4 166 0 2253 78 3 33 chr6 33286172 33286478 -149128764 + AluYa5 SINE Alu 1 297 -14 225 0 0 0 chr6 33286495 33286520 -149128722 + (CA)n Simple_repeat Simple_repeat 1 25 0 2200 99 61 0 chr6 33286644 33286938 -149128304 - AluSx SINE Alu 0 312 1 2361 86 17 0 chr6 33287468 33287770 -149127472 + AluSp SINE Alu 1 307 -6 2388 71 7 3 chr6 33288131 33288425 -149126817 + AluSp SINE Alu 2 296 -17 458 233 62 98 chr6 33288427 33288583 -149126659 - L1MC5 LINE L1 -60 7901 7741 1998 146 3 3 chr6 33288583 33288891 -149126351 - AluJb SINE Alu -3 309 2 458 233 62 98 chr6 33288891 33288917 -149126325 - L1MC5 LINE L1 -220 7741 7716 2243 77 24 17 chr6 33288917 33289214 -149126028 + AluY SINE Alu 1 299 -12 458 233 62 98 chr6 33289214 33289399 -149125843 - L1MC5 LINE L1 -245 7716 7546 495 275 55 11 chr6 33289402 33289584 -149125658 - L1MC5 LINE L1 -511 7450 7261 206 281 0 16 chr6 33289899 33289963 -149125279 + L3b LINE CR1 1304 1366 -217 2226 129 3 0 chr6 33290124 33290433 -149124809 - AluSq SINE Alu 0 313 4 985 196 63 58 chr6 33290465 33290536 -149124706 - Charlie4a DNA MER1_type -1456 505 436 1866 155 0 20 chr6 33290536 33290839 -149124403 - AluJb SINE Alu -15 297 1 985 196 63 58 chr6 33290839 33291018 -149124224 - Charlie4a DNA MER1_type -1525 436 259 2545 75 3 0 chr6 33291018 33291324 -149123918 - AluSp SINE Alu -6 307 1 985 196 63 58 chr6 33291324 33291499 -149123743 - Charlie4a DNA MER1_type -1702 259 24 482 207 0 9 chr6 33291669 33291785 -149123457 + Charlie4a DNA MER1_type 70 184 -324 212 270 16 32 chr6 33292013 33292076 -149123166 - L2 LINE L2 -42 3230 3169 429 270 0 26 chr6 33292401 33292516 -149122726 - MIR SINE MIR -91 171 60 495 291 113 19 chr6 33292993 33293206 -149122036 + MIR SINE MIR 20 252 -10 191 270 139 29 chr6 33294017 33294154 -149121088 - MIR SINE MIR -1 261 110 285 297 76 17 chr6 33294324 33294442 -149120800 + L2 LINE L2 3186 3310 -3 1249 177 47 86 chr6 33294676 33294855 -149120387 - Charlie4a DNA MER1_type -1460 501 317 2392 78 24 0 chr6 33294855 33295150 -149120092 - AluSq SINE Alu -11 302 1 1249 177 47 86 chr6 33295150 33295214 -149120028 - Charlie4a DNA MER1_type -1644 317 252 2105 102 36 0 chr6 33295214 33295520 -149119722 - AluSq SINE Alu 0 316 1 1249 177 47 86 chr6 33295520 33295658 -149119584 - Charlie4a DNA MER1_type -1709 252 133 2109 110 0 0 chr6 33295724 33295997 -149119245 - AluSg SINE Alu -36 274 2 379 236 91 0 chr6 33295998 33296108 -149119134 - Charlie4a DNA MER1_type -372 136 17 193 314 29 14 chr6 33296980 33297050 -149118192 + L3b LINE CR1 1511 1581 -2 2295 85 0 3 chr6 33297936 33298272 -149116970 + AluSg SINE Alu 1 335 0 2168 112 0 0 chr6 33299741 33300193 -149115049 + AluSq SINE Alu 1 452 0 403 230 30 0 chr6 33300474 33300574 -149114668 + MER94 DNA DNA 13 115 -19 2392 93 0 7 chr6 33300800 33301102 -149114140 + AluSc SINE Alu 1 300 -9 266 266 0 0 chr6 33301561 33301625 -149113617 + L2 LINE L2 3208 3271 -1 207 0 0 0 chr6 33302032 33302055 -149113187 + (TG)n Simple_repeat Simple_repeat 2 24 0 2557 78 0 0 chr6 33302185 33302494 -149112748 + AluSg SINE Alu 1 309 -1 185 229 229 17 chr6 33303370 33303488 -149111754 - MIR SINE MIR -34 228 86 257 342 120 13 chr6 33303552 33303699 -149111543 + MIR3 SINE MIR 32 198 -10 189 0 0 0 chr6 33303699 33303720 -149111522 + (CA)n Simple_repeat Simple_repeat 2 22 0 2315 186 43 50 chr6 33303749 33303840 -149111402 + Tigger7 DNA MER2_type 2 92 -2495 2139 122 0 14 chr6 33303840 33304135 -149111107 + AluSx SINE Alu 1 291 -21 2315 186 43 50 chr6 33304135 33304722 -149110520 + Tigger7 DNA MER2_type 92 682 -1905 1672 130 24 4 chr6 33304722 33304968 -149110274 + AluSx SINE Alu 51 301 -11 2315 186 43 50 chr6 33304968 33305020 -149110222 + Tigger7 DNA MER2_type 682 2587 0 214 151 57 0 chr6 33305380 33305433 -149109809 + CT-rich Low_complexity Low_complexity 5 60 0 2160 75 21 0 chr6 33305530 33305840 -149109402 + AluSp SINE Alu 1 316 0 32 0 0 0 chr6 33307067 33307099 -149108143 + GC_rich Low_complexity Low_complexity 1 32 0 2501 90 0 0 chr6 33307326 33307636 -149107606 + AluSq SINE Alu 3 312 -1 1300 133 6 0 chr6 33307688 33307869 -149107373 + AluSx SINE Alu 1 182 -130 1738 190 0 7 chr6 33307952 33308247 -149106995 + AluJo SINE Alu 12 304 -8 1899 87 111 35 chr6 33308298 33308586 -149106656 - AluSg SINE Alu 0 310 1 1141 59 13 0 chr6 33308610 33308763 -149106479 - L1PA4 LINE L1 0 6155 6001 2534 84 3 0 chr6 33308811 33309121 -149106121 - AluSp SINE Alu -2 311 1 2308 117 0 3 chr6 33309182 33309490 -149105752 - AluSx SINE Alu -5 307 1 1574 266 93 78 chr6 33309604 33310402 -149104840 + HERVL40 LTR ERVL 415 1224 -4306 1048 220 116 67 chr6 33310456 33310536 -149104706 + MLT1E3 LTR MaLR 1 76 -548 1907 152 42 121 chr6 33310536 33310990 -149104252 - MER47B DNA MER2_type 0 418 1 1048 220 116 67 chr6 33310990 33311281 -149103961 + MLT1E3 LTR MaLR 76 390 -234 2278 95 3 0 chr6 33312196 33312480 -149102762 + AluSp SINE Alu 1 285 -28 225 0 0 0 chr6 33312480 33312505 -149102737 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 1977 196 82 14 chr6 33312505 33313006 -149102236 - L1MC3 LINE L1 -24 7761 7227 906 187 29 85 chr6 33313477 33313587 -149101655 - L1MC3 LINE L1 0 7785 7670 2204 106 10 0 chr6 33313587 33313880 -149101362 - AluSx SINE Alu -16 296 1 906 187 29 85 chr6 33313880 33313978 -149101264 - L1MC3 LINE L1 -115 7670 7598 2019 161 0 0 chr6 33313978 33314270 -149100972 - AluSx SINE Alu -20 292 1 906 187 29 85 chr6 33314270 33314376 -149100866 - L1MC3 LINE L1 -187 7598 7488 1223 197 32 81 chr6 33314393 33314809 -149100433 - MSTB1 LTR MaLR 0 432 51 1862 117 4 0 chr6 33314821 33315068 -149100174 + AluSp SINE Alu 64 311 -2 1527 91 0 5 chr6 33315421 33315619 -149099623 + AluSg/x SINE Alu 82 278 -32 2269 74 40 0 chr6 33315789 33316088 -149099154 - AluY SINE Alu 0 311 1 2370 53 0 3 chr6 33316107 33316392 -149098850 - AluY SINE Alu -27 284 1 2202 86 7 17 chr6 33316392 33316683 -149098559 - AluSp SINE Alu -25 288 1 298 315 47 51 chr6 33316767 33317021 -149098221 - L1M4 LINE L1 -1315 4831 4579 2157 158 14 0 chr6 33317077 33317424 -149097818 + L1PB1 LINE L1 5800 6151 0 2189 136 3 0 chr6 33317427 33317735 -149097507 - AluSx SINE Alu -3 309 1 2232 113 10 3 chr6 33317955 33318266 -149096976 - AluSq SINE Alu 0 313 1 2387 110 0 0 chr6 33318313 33318623 -149096619 - AluSg SINE Alu 0 310 1 465 71 0 60 chr6 33318623 33318698 -149096544 - AluSp/q SINE Alu -7 306 235 1372 166 8 11 chr6 33318700 33318965 -149096277 - LTR2B LTR ERV1 0 490 227 2505 70 0 13 chr6 33318966 33319280 -149095962 - AluY SINE Alu -1 310 1 2521 209 12 39 chr6 33319280 33319784 -149095458 - L1PA15-16 LINE L1 -4355 1848 1369 2575 63 0 0 chr6 33319784 33320087 -149095155 - AluY SINE Alu -8 303 1 2521 209 12 39 chr6 33320087 33320325 -149094917 - L1PA15-16 LINE L1 -4834 1369 1126 1218 295 44 23 chr6 33320402 33321205 -149094037 - L1PA15-16 LINE L1 -5173 1031 356 2576 68 0 10 chr6 33321305 33321614 -149093628 - AluSp SINE Alu -7 306 1 571 344 16 28 chr6 33321639 33321959 -149093283 - L1PA15-16 LINE L1 -5836 368 53 428 353 98 24 chr6 33321949 33322566 -149092676 - L1M2b LINE L1 -6333 876 273 * 2396 170 49 0 chr6 33322668 33323074 -149092168 + MSTB LTR MaLR 1 426 0 2372 84 6 28 chr6 33323183 33323503 -149091739 - AluSp SINE Alu 0 313 1 2182 88 67 0 chr6 33323837 33324120 -149091122 - AluSq SINE Alu -11 302 1 834 258 71 19 chr6 33324120 33324388 -149090854 - L1ME1 LINE L1 -63 6103 5822 243 61 0 0 chr6 33324388 33324421 -149090821 + (TA)n Simple_repeat Simple_repeat 1 33 0 2439 89 3 0 chr6 33324421 33324724 -149090518 - AluSp SINE Alu -9 304 1 533 142 9 75 chr6 33324726 33324832 -149090410 - AluJo/FLAM SINE Alu -179 133 35 2067 122 30 23 chr6 33324855 33325158 -149090084 - AluSq SINE Alu -8 305 1 1761 229 69 21 chr6 33325163 33325533 -149089709 - L1MC3 LINE L1 -743 5472 5121 1634 184 57 0 chr6 33325533 33325703 -149089539 - AluJb SINE Alu -9 303 109 252 0 0 0 chr6 33325703 33325731 -149089511 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 1634 184 57 0 chr6 33325731 33325843 -149089399 - AluJb SINE Alu -203 109 5 1761 229 69 21 chr6 33325843 33326314 -149088928 - L1MC3 LINE L1 -1094 5121 4995 2038 120 4 0 chr6 33326314 33326589 -149088653 - AluSx SINE Alu -1 311 36 1761 229 69 21 chr6 33326589 33326796 -149088446 - L1MC3 LINE L1 -1220 4995 4799 1037 220 63 16 chr6 33326797 33327161 -149088081 - L1MC3 LINE L1 -3168 3047 2667 693 309 22 53 chr6 33327158 33327176 -149088066 - L1MC3 LINE L1 -4554 1842 1825 * 2464 76 3 13 chr6 33327176 33327492 -149087750 + AluSp SINE Alu 1 313 0 693 309 22 53 chr6 33327492 33327884 -149087358 - L1MC3 LINE L1 -4571 1825 1445 201 74 0 0 chr6 33328053 33328080 -149087162 + (CA)n Simple_repeat Simple_repeat 2 28 0 2024 90 0 50 chr6 33329372 33329650 -149085592 + AluSg SINE Alu 34 297 -13 552 68 0 0 chr6 33329756 33329829 -149085413 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 234 212 106 59 chr6 33329917 33330002 -149085240 - L2 LINE L2 -1 3271 3183 1940 165 41 11 chr6 33332975 33333295 -149081947 + MLT2C1 LTR ERVL 24 358 -39 393 22 0 0 chr6 33333295 33333341 -149081901 + (CA)n Simple_repeat Simple_repeat 2 47 0 1940 165 41 11 chr6 33333341 33333383 -149081859 + MLT2C1 LTR ERVL 358 397 0 916 234 109 13 chr6 33334854 33335196 -149080046 + LTR43 LTR ERV1 177 459 -53 26 30 0 0 chr6 33336009 33336042 -149079200 + AT_rich Low_complexity Low_complexity 1 33 0 2884 318 59 23 chr6 33336917 33338948 -149076294 + ERVL LTR ERVL 873 3043 -1953 687 296 42 0 chr6 33339037 33339344 -149075898 + ERVL LTR ERVL 3162 3481 -2173 * 1406 331 42 49 chr6 33339342 33340561 -149074681 + ERVL LTR ERVL 3688 5260 -504 545 332 80 8 chr6 33340569 33340943 -149074299 + LTR16B LTR ERVL 62 462 -2 441 167 0 0 chr6 33341055 33341133 -149074109 + MLT1F LTR MaLR 463 540 -2 252 116 23 0 chr6 33341483 33341526 -149073716 - MADE1 DNA Mariner -2 78 35 2034 208 80 15 chr6 33342563 33343091 -149072151 + MLT1F1 LTR MaLR 6 567 0 1620 189 0 11 chr6 33343167 33343452 -149071790 - AluJb SINE Alu -22 290 9 23 0 0 0 chr6 33343463 33343486 -149071756 + AT_rich Low_complexity Low_complexity 1 23 0 5603 97 30 73 chr6 33343624 33343661 -149071581 + SVA Other Other 21 58 -1356 1220 0 0 53 chr6 33343661 33343851 -149071391 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5603 97 30 73 chr6 33343851 33346221 -149069021 + SVA Other Other 58 1414 0 1923 236 82 17 chr6 33346232 33346767 -149068475 + MLT1E3 LTR MaLR 3 572 -52 1121 223 19 52 chr6 33346777 33347086 -149068156 + AluJo SINE Alu 11 309 -3 326 129 32 0 chr6 33347086 33347148 -149068094 + MLT1E3 LTR MaLR 561 624 0 223 328 30 0 chr6 33347388 33347455 -149067787 - L2 LINE L2 -560 2754 2686 2526 46 30 0 chr6 33348159 33348461 -149066781 + AluY SINE Alu 1 311 0 198 171 0 0 chr6 33348593 33348634 -149066608 + GA-rich Low_complexity Low_complexity 2 42 0 1257 77 0 0 chr6 33348634 33348804 -149066438 + (GAA)n Simple_repeat Simple_repeat 2 171 0 216 0 0 0 chr6 33349050 33349074 -149066168 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 27 49 0 0 chr6 33352379 33352420 -149062822 + AT_rich Low_complexity Low_complexity 1 41 0 216 0 0 0 chr6 33352457 33352481 -149062761 + (TG)n Simple_repeat Simple_repeat 1 24 0 614 328 94 27 chr6 33353069 33353472 -149061770 - L1MC5 LINE L1 -178 7783 7354 849 203 28 46 chr6 33353891 33354108 -149061134 + MER20 DNA MER1_type 7 219 0 26 50 0 0 chr6 33355108 33355148 -149060094 + AT_rich Low_complexity Low_complexity 1 40 0 3136 194 35 16 chr6 33355287 33355810 -149059432 + L1MB3 LINE L1 4903 5414 -769 3136 181 41 1 chr6 33355810 33356467 -149058775 + L1MB3 LINE L1 5493 6175 -8 3136 194 35 16 chr6 33356467 33356509 -149058733 + L1MB3 LINE L1 5414 6175 -8 452 293 104 39 chr6 33356509 33357086 -149058156 + L2 LINE L2 2564 3178 -135 2339 177 102 14 chr6 33357086 33357113 -149058129 - MLT2B3 LTR ERVL -8 546 523 563 27 0 14 chr6 33357113 33357187 -149058055 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 2339 177 102 14 chr6 33357187 33357661 -149057581 - MLT2B3 LTR ERVL -31 523 1 246 297 126 0 chr6 33357669 33357780 -149057462 + L2 LINE L2 3189 3313 0 1712 193 0 13 chr6 33357874 33358174 -149057068 - AluJb SINE Alu -16 296 1 2051 114 3 10 chr6 33358362 33358652 -149056590 - AluSx SINE Alu -24 288 1 304 315 35 42 chr6 33358653 33358796 -149056446 + L1ME4a LINE L1 5815 5956 -165 2058 158 0 3 chr6 33358811 33359121 -149056121 + AluSx SINE Alu 1 309 -3 998 161 0 0 chr6 33359390 33359533 -149055709 + FAM SINE Alu 14 156 -29 26 50 0 0 chr6 33359765 33359805 -149055437 + AT_rich Low_complexity Low_complexity 1 40 0 1854 197 23 32 chr6 33360546 33360982 -149054260 - L1MB5 LINE L1 0 6174 5743 240 86 0 0 chr6 33361087 33361122 -149054120 + (CA)n Simple_repeat Simple_repeat 1 35 0 365 314 8 34 chr6 33361176 33361294 -149053948 + L1MC4 LINE L1 6589 6703 -1339 2318 224 31 23 chr6 33361300 33361953 -149053289 - L1M4c LINE L1 -4730 1654 997 628 264 45 27 chr6 33362402 33362622 -149052620 - L1ME3A LINE L1 -15 6155 5932 526 243 77 12 chr6 33362696 33362894 -149052348 - L1ME3A LINE L1 -379 5791 5586 635 235 56 71 chr6 33362903 33363281 -149051961 + L1MC5 LINE L1 7081 7452 -509 1754 202 104 13 chr6 33364885 33365356 -149049886 + L1MB2 LINE L1 5657 6170 -1 181 273 78 0 chr6 33365484 33365561 -149049681 + MER5A DNA MER1_type 22 104 -85 863 310 125 14 chr6 33365609 33366248 -149048994 + HAL1 LINE L1 1798 2507 0 478 282 141 0 chr6 33367462 33367632 -149047610 - MIR SINE MIR -39 223 30 1763 203 30 11 chr6 33372314 33372891 -149042351 + L1M3 LINE L1 4899 5490 -693 297 0 0 0 chr6 33372891 33372924 -149042318 + (CA)n Simple_repeat Simple_repeat 2 34 0 1763 203 30 11 chr6 33372924 33373053 -149042189 + L1M3 LINE L1 5490 5615 -568 2247 123 3 0 chr6 33373053 33373362 -149041880 + AluY SINE Alu 1 310 -1 188 35 35 0 chr6 33374535 33374564 -149040678 + (GGAGA)n Simple_repeat Simple_repeat 2 31 0 772 59 0 0 chr6 33376276 33376377 -149038865 + HY3 scRNA scRNA 1 101 0 287 269 13 0 chr6 33376384 33376462 -149038780 + L1MB7 LINE L1 6048 6126 -58 248 246 0 0 chr6 33377109 33377166 -149038076 + L1MB7 LINE L1 6111 6167 -17 668 223 29 11 chr6 33377251 33377426 -149037816 + MER5B DNA MER1_type 1 178 0 189 0 0 0 chr6 33377493 33377514 -149037728 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 659 228 13 20 chr6 33377514 33377663 -149037579 - FRAM SINE Alu -18 148 1 225 268 0 18 chr6 33379299 33379355 -149035887 + GA-rich Low_complexity Low_complexity 1 55 0 451 238 0 86 chr6 33379618 33379769 -149035473 - L1ME1 LINE L1 -4 6162 6025 2255 48 15 105 chr6 33379964 33380298 -149034944 - AluY SINE Alu -7 304 1 2489 81 0 3 chr6 33380299 33380609 -149034633 - AluSq SINE Alu 0 313 5 756 197 34 28 chr6 33380708 33380886 -149034356 + FRAM SINE Alu 1 176 0 477 115 0 0 chr6 33382111 33382189 -149033053 + (TG)n Simple_repeat Simple_repeat 1 78 0 250 336 97 35 chr6 33383216 33383588 -149031654 + L2 LINE L2 2499 2893 -421 612 211 0 8 chr6 33385951 33386074 -149029168 + FLAM_C SINE Alu 3 124 -19 949 329 30 16 chr6 33386191 33386619 -149028623 - LTR33 LTR ERVL -65 456 23 2327 123 0 0 chr6 33386733 33387035 -149028207 + AluSx SINE Alu 1 302 -10 1549 176 108 3 chr6 33389916 33390257 -149024985 + Tigger1 DNA MER2_type 2042 2418 0 1472 267 103 14 chr6 33391477 33392099 -149023143 + L2 LINE L2 18 694 -2620 1700 253 106 5 chr6 33392106 33392677 -149022565 + MLT1E2 LTR MaLR 1 626 0 395 265 90 0 chr6 33392678 33392867 -149022375 + L2 LINE L2 698 903 -2411 1714 293 57 24 chr6 33392976 33393717 -149021525 + L2 LINE L2 892 1656 -1658 842 325 81 11 chr6 33393717 33394151 -149021091 + LTR16B LTR ERVL 1 464 0 2223 327 49 22 chr6 33394835 33396939 -149018303 + HERV16 LTR ERVL 853 2958 -2038 655 374 56 26 chr6 33397389 33398460 -149016782 + HERV16 LTR ERVL 4103 5205 -280 699 295 52 22 chr6 33398481 33398847 -149016395 + LTR16B LTR ERVL 62 438 -26 451 162 0 0 chr6 33398971 33399045 -149016197 + MLT1F1 LTR MaLR 491 564 -3 287 316 11 0 chr6 33399155 33399250 -149015992 + T-rich Low_complexity Low_complexity 2 97 0 189 159 48 16 chr6 33399251 33399314 -149015928 + CT-rich Low_complexity Low_complexity 2 66 0 2308 78 10 14 chr6 33399500 33399796 -149015446 + AluY SINE Alu 1 295 -16 523 297 143 23 chr6 33399882 33400273 -149014969 + L1ME3A LINE L1 5528 5965 -205 397 157 0 0 chr6 33401165 33401235 -149014007 - MER41B LTR ERV1 -86 549 480 6516 91 16 0 chr6 33401578 33403091 -149012151 + L1PA10 LINE L1 4619 6168 0 1922 221 99 27 chr6 33403175 33403268 -149011974 + MLT1F1 LTR MaLR 15 100 -467 2050 142 34 47 chr6 33403268 33403648 -149011594 + THE1C LTR MaLR 1 375 0 1922 221 99 27 chr6 33403648 33404070 -149011172 + MLT1F1 LTR MaLR 100 567 0 1329 216 3 21 chr6 33404143 33404434 -149010808 - AluJb SINE Alu -25 287 2 1708 225 70 50 chr6 33404598 33405132 -149010110 + MLT1E3 LTR MaLR 3 431 -74 1224 227 38 34 chr6 33405132 33405423 -149009819 + AluJo SINE Alu 1 292 -20 1708 225 70 50 chr6 33405423 33405500 -149009742 + MLT1E3 LTR MaLR 431 505 0 42086 56 15 1 chr6 33405670 33411713 -149003529 + L1PA6 LINE L1 22 6148 -6 342 93 19 0 chr6 33412401 33412455 -149002787 - MER41B LTR ERV1 -88 547 493 6082 101 19 7 chr6 33412822 33414354 -149000888 + L1PA10 LINE L1 4624 6166 -2 1938 247 47 27 chr6 33414432 33414531 -149000711 + MLT1F1 LTR MaLR 6 102 -465 2159 154 5 24 chr6 33414531 33414913 -149000329 + THE1C LTR MaLR 1 375 0 1938 247 47 27 chr6 33414913 33415364 -148999878 + MLT1F1 LTR MaLR 102 567 0 1578 183 3 14 chr6 33415416 33415730 -148999512 - AluJb SINE Alu 0 311 1 1868 244 88 21 chr6 33415903 33416428 -148998814 + MLT1E3 LTR MaLR 14 573 -51 204 157 0 39 chr6 33418774 33418825 -148996417 + G-rich Low_complexity Low_complexity 5 53 0 350 354 42 29 chr6 33419137 33419592 -148995650 + ERVL LTR ERVL 4518 4978 -786 864 304 39 13 chr6 33419848 33420230 -148995012 + LTR16B LTR ERVL 69 460 -4 361 218 0 0 chr6 33420342 33420420 -148994822 + MLT1F1 LTR MaLR 488 565 -2 204 125 0 0 chr6 33420560 33420592 -148994650 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 330 331 116 3 chr6 33420847 33421131 -148994111 + L1ME3A LINE L1 5554 5869 -301 1049 73 13 0 chr6 33421399 33421550 -148993692 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 2198 113 0 0 chr6 33421552 33421835 -148993407 - AluSq SINE Alu -30 283 1 2140 229 51 22 chr6 33422941 33423487 -148991755 + MLT1F1 LTR MaLR 6 567 0 22 0 0 0 chr6 33423565 33423587 -148991655 + AT_rich Low_complexity Low_complexity 1 22 0 2217 241 68 19 chr6 33423690 33424278 -148990964 + MLT1E3 LTR MaLR 6 622 -2 408 264 16 8 chr6 33424437 33424562 -148990680 - L2 LINE L2 0 3313 3188 290 312 43 22 chr6 33424570 33424708 -148990534 - L2 LINE L2 -549 2765 2625 2507 42 3 22 chr6 33424977 33425288 -148989954 + AluY SINE Alu 1 305 -6 1694 168 0 32 chr6 33425358 33425673 -148989569 + AluJo SINE Alu 1 305 -7 228 234 0 0 chr6 33427731 33427778 -148987464 + L1MA10 LINE L1 6185 6231 -103 2096 164 36 8 chr6 33428542 33428902 -148986340 + MSTA LTR MaLR 1 370 -58 28 0 0 0 chr6 33428931 33428959 -148986283 + AT_rich Low_complexity Low_complexity 1 28 0 479 113 0 0 chr6 33429811 33429882 -148985360 + MSTA LTR MaLR 358 428 0 2864 164 8 0 chr6 33429882 33430357 -148984885 + MSTB1-int LTR MaLR 1 479 -1172 2248 240 33 28 chr6 33430366 33430937 -148984305 + MSTB1-int LTR MaLR 1078 1651 0 1841 206 66 7 chr6 33430937 33431345 -148983897 + MSTB1 LTR MaLR 1 432 0 479 288 75 12 chr6 33431345 33431505 -148983737 - MER21B LTR ERV1 -675 188 19 3679 259 53 42 chr6 33431611 33432516 -148982726 - MER21B-int LTR ERV1 -58 4133 3209 2284 109 3 0 chr6 33432516 33432818 -148982424 - AluSx SINE Alu -9 303 1 3679 259 53 42 chr6 33432818 33433164 -148982078 - MER21B-int LTR ERV1 -982 3209 2868 4833 241 121 26 chr6 33433165 33435082 -148980160 + L1M4 LINE L1 3251 5348 -798 570 267 11 6 chr6 33435063 33435239 -148980003 + L1MC/D LINE L1 4842 5018 -1128 * 591 177 0 0 chr6 33435266 33435362 -148979880 + FLAM_A SINE Alu 1 96 -46 2061 203 68 26 chr6 33435375 33436107 -148979135 + L1MC/D LINE L1 4992 5765 -594 863 216 188 4 chr6 33436133 33436472 -148978770 - Charlie1 DNA MER1_type -1018 1743 38 584 274 9 50 chr6 33436677 33436896 -148978346 + L1PB4 LINE L1 5946 6155 -1 240 170 0 0 chr6 33436950 33437003 -148978239 + (TG)n Simple_repeat Simple_repeat 2 54 0 25 65 0 0 chr6 33438142 33438188 -148977054 + AT_rich Low_complexity Low_complexity 1 46 0 324 291 143 16 chr6 33438188 33438370 -148976872 - MIR SINE MIR -39 223 19 1495 345 33 32 chr6 33441721 33442788 -148972454 + ERVL LTR ERVL 2310 3096 -1900 928 318 65 42 chr6 33442899 33443783 -148971459 + ERVL LTR ERVL 3710 4956 -808 697 304 49 23 chr6 33444097 33444485 -148970757 + LTR16B LTR ERVL 62 459 -5 381 164 14 0 chr6 33444603 33444676 -148970566 + MLT1F1 LTR MaLR 491 564 -3 282 247 0 43 chr6 33444820 33445006 -148970236 + CT-rich Low_complexity Low_complexity 3 180 0 904 106 0 0 chr6 33445270 33445383 -148969859 + AluSx SINE Alu 1 113 -200 504 164 135 10 chr6 33445392 33445496 -148969746 - LTR3b LTR ERVK -5 432 316 * 1061 53 8 0 chr6 33445495 33445627 -148969615 - LTR3b LTR ERVK -365 135 3 1336 113 6 0 chr6 33445628 33445843 -148969399 + AluSx SINE Alu 107 322 0 383 290 140 27 chr6 33445843 33446136 -148969106 + L1ME3A LINE L1 5547 5872 -298 520 108 0 0 chr6 33446283 33446366 -148968876 + L1 LINE L1 4762 4844 -1302 292 67 100 17 chr6 33447338 33447398 -148967844 - MER41A LTR ERV1 -88 466 402 6312 95 9 9 chr6 33447752 33449276 -148965966 + L1PA10 LINE L1 4619 6144 -24 252 0 0 0 chr6 33449276 33449304 -148965938 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 6312 95 9 9 chr6 33449304 33449330 -148965912 + L1PA10 LINE L1 6143 6168 0 401 262 39 0 chr6 33449387 33449486 -148965756 + MLT1F1 LTR MaLR 6 108 -459 632 161 31 62 chr6 33449486 33449616 -148965626 + THE1C LTR MaLR 1 126 -249 1814 96 12 0 chr6 33449634 33449885 -148965357 - L1PA10 LINE L1 -136 6032 5779 1409 109 5 19 chr6 33449885 33450096 -148965146 + THE1C LTR MaLR 168 375 0 1943 214 42 20 chr6 33450097 33450550 -148964692 + MLT1F1 LTR MaLR 105 567 0 1547 171 14 11 chr6 33450622 33450908 -148964334 - AluJb SINE Alu -25 287 1 1855 217 66 57 chr6 33451081 33451604 -148963638 + MLT1E3 LTR MaLR 14 577 -77 1251 197 45 35 chr6 33451604 33451893 -148963349 + AluJo SINE Alu 1 292 -20 1855 217 66 57 chr6 33451893 33451972 -148963270 + MLT1E3 LTR MaLR 577 654 0 209 283 206 22 chr6 33452200 33452380 -148962862 - L2 LINE L2 -549 2765 2553 22 0 0 0 chr6 33453744 33453766 -148961476 + GC_rich Low_complexity Low_complexity 1 22 0 2124 109 23 3 chr6 33457217 33457520 -148957722 - AluSc SINE Alu 0 309 1 215 330 70 17 chr6 33457984 33458099 -148957143 - L2 LINE L2 -2 3311 3191 929 120 44 85 chr6 33458102 33458334 -148956908 - MER30B DNA MER1_type 0 230 1 1249 296 108 9 chr6 33458381 33459085 -148956157 - L2 LINE L2 -166 3147 2381 395 250 109 31 chr6 33459403 33459568 -148955674 + L1MEc LINE L1 2145 2298 -3917 213 39 0 0 chr6 33459568 33459594 -148955648 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 395 250 109 31 chr6 33459594 33459691 -148955551 + L1MEc LINE L1 2298 2386 -3829 850 213 38 0 chr6 33459772 33459932 -148955310 - FRAM SINE Alu -12 164 1 490 210 179 31 chr6 33460444 33460606 -148954636 + MER20 DNA MER1_type 32 217 -2 328 267 180 16 chr6 33460612 33460746 -148954496 - MIR SINE MIR -59 149 14 1610 183 48 94 chr6 33462237 33462544 -148952698 + L1P5 LINE L1 4904 5223 -928 2339 97 0 0 chr6 33462544 33462854 -148952388 + AluSx SINE Alu 1 310 -2 1610 183 48 94 chr6 33462854 33463087 -148952155 + L1P5 LINE L1 5223 5420 -731 3001 182 43 19 chr6 33463087 33463758 -148951484 + L1MB4 LINE L1 5493 6179 -1 1610 183 48 94 chr6 33463758 33463795 -148951447 + L1P5 LINE L1 5420 5457 -694 480 302 94 38 chr6 33463795 33464373 -148950869 + L2 LINE L2 2569 3181 -132 1679 219 135 9 chr6 33464373 33464410 -148950832 - MLT2B3 LTR ERVL -3 551 520 788 38 53 0 chr6 33464410 33464543 -148950699 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 1679 219 135 9 chr6 33464543 33464790 -148950452 - MLT2B3 LTR ERVL -34 520 305 267 104 0 0 chr6 33464790 33464838 -148950404 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 1679 219 135 9 chr6 33464838 33464973 -148950269 - MLT2B3 LTR ERVL -249 305 78 1435 174 46 7 chr6 33465006 33465288 -148949954 - AluJb SINE Alu -19 293 1 305 309 134 56 chr6 33465294 33465535 -148949707 + L1ME4a LINE L1 5636 5910 -211 1599 141 8 8 chr6 33465535 33465791 -148949451 + AluSx SINE Alu 35 290 -22 305 309 134 56 chr6 33465791 33465869 -148949373 + L1ME4a LINE L1 5910 5980 -141 797 204 72 0 chr6 33466141 33466293 -148948949 + FAM SINE Alu 1 163 -12 230 93 74 0 chr6 33466518 33466572 -148948670 + (TA)n Simple_repeat Simple_repeat 1 58 0 1796 211 19 24 chr6 33467325 33467751 -148947491 - L1MB5 LINE L1 -8 6166 5743 3693 228 73 74 chr6 33467819 33469381 -148945861 - L1M4c LINE L1 -4659 1987 375 1877 176 0 0 chr6 33469381 33469693 -148945549 - AluJb SINE Alu 0 312 1 3693 228 73 74 chr6 33469693 33469983 -148945259 - L1M4c LINE L1 -6271 375 86 224 231 62 31 chr6 33469985 33470050 -148945192 + MER5A DNA MER1_type 80 157 -32 2146 87 13 0 chr6 33470051 33470350 -148944892 - AluSp SINE Alu -10 303 1 246 331 75 38 chr6 33470511 33470671 -148944571 - L2 LINE L2 -4 3309 3144 447 331 77 23 chr6 33470773 33471125 -148944117 - L1MEc LINE L1 -4612 1834 1398 2006 185 46 73 chr6 33471139 33471702 -148943540 + LTR10A LTR ERV1 1 548 -61 720 258 0 6 chr6 33471842 33472020 -148943222 + MLT1D LTR MaLR 1 177 -328 246 279 74 42 chr6 33472053 33472268 -148942974 - L1M4 LINE L1 -2203 3943 3722 535 261 69 57 chr6 33472299 33472705 -148942537 + L1MC5 LINE L1 7091 7501 -460 2011 208 51 9 chr6 33474443 33474910 -148940332 + L1MB2 LINE L1 5685 6171 0 535 281 72 18 chr6 33475168 33475446 -148939796 + HAL1 LINE L1 1800 2092 -415 38 22 0 0 chr6 33476072 33476117 -148939125 + AT_rich Low_complexity Low_complexity 1 45 0 394 249 30 106 chr6 33476157 33476422 -148938820 + HAL1 LINE L1 2263 2507 0 23 68 0 0 chr6 33477568 33477612 -148937630 + AT_rich Low_complexity Low_complexity 1 44 0 411 290 131 11 chr6 33477612 33477795 -148937447 - MIR SINE MIR -39 223 19 397 279 0 16 chr6 33479518 33479640 -148935602 - L1MC4a LINE L1 -1844 5964 5845 494 285 108 34 chr6 33479844 33480136 -148935106 + L1ME3 LINE L1 5624 5937 -233 1285 232 0 4 chr6 33480140 33480420 -148934822 + AluJb SINE Alu 1 279 -33 207 0 0 0 chr6 33480423 33480446 -148934796 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1861 265 92 11 chr6 33481110 33481807 -148933435 + L1ME2 LINE L1 5411 6163 -1 25 0 0 0 chr6 33481835 33481860 -148933382 + AT_rich Low_complexity Low_complexity 1 25 0 6196 166 26 39 chr6 33481876 33482154 -148933088 + L1MA4A LINE L1 3971 4251 -2052 2364 65 0 43 chr6 33482154 33482479 -148932763 + AluY SINE Alu 1 311 0 6196 166 26 39 chr6 33482479 33482737 -148932505 + L1MA4A LINE L1 4251 4511 -1792 790 197 0 0 chr6 33482737 33482869 -148932373 + FLAM_C SINE Alu 2 133 0 6196 166 26 39 chr6 33482869 33484534 -148930708 + L1MA4A LINE L1 4511 6137 -166 2301 73 0 32 chr6 33484534 33484848 -148930394 + AluY SINE Alu 1 304 -7 6196 166 26 39 chr6 33484848 33485013 -148930229 + L1MA4A LINE L1 6137 6303 0 227 182 0 109 chr6 33485448 33485503 -148929739 + MLT1B LTR MaLR 1 49 -341 * 1039 163 21 16 chr6 33485494 33485684 -148929558 + MLT1B LTR MaLR 200 390 0 180 327 131 9 chr6 33486180 33486287 -148928955 - MIR SINE MIR -68 140 21 180 0 0 0 chr6 33486833 33486853 -148928389 + (A)n Simple_repeat Simple_repeat 1 20 0 2209 98 0 3 chr6 33488292 33488599 -148926643 + AluSq SINE Alu 1 306 -7 360 315 163 0 chr6 33488630 33488814 -148926428 - MIR SINE MIR -27 235 22 191 367 0 51 chr6 33490142 33490221 -148925021 - MIR SINE MIR -165 97 23 1990 155 81 3 chr6 33490252 33490600 -148924642 + Tigger1 DNA MER2_type 2043 2417 -1 1606 275 104 8 chr6 33491787 33492409 -148922833 + L2 LINE L2 18 699 -2615 1871 243 87 19 chr6 33492411 33492987 -148922255 + MLT1E2 LTR MaLR 1 615 -11 1975 234 47 123 chr6 33493018 33494033 -148921209 + L2 LINE L2 719 1656 -1658 767 311 80 20 chr6 33494033 33494471 -148920771 + LTR16B LTR ERVL 1 464 0 296 374 65 28 chr6 33494473 33495046 -148920196 + ERVL LTR ERVL 3 596 -4400 581 339 41 22 chr6 33495152 33495471 -148919771 + ERVL LTR ERVL 853 1177 -3819 281 339 48 18 chr6 33495496 33495723 -148919519 + ERVL LTR ERVL 1302 1535 -4119 3045 314 36 42 chr6 33495833 33497007 -148918235 + ERVL LTR ERVL 1666 2832 -2164 2094 113 3 0 chr6 33497007 33497300 -148917942 + AluSp SINE Alu 1 294 -19 3045 314 36 42 chr6 33497300 33497564 -148917678 + ERVL LTR ERVL 2832 3096 -1900 561 324 90 6 chr6 33497599 33497911 -148917331 + ERVL LTR ERVL 3187 3524 -2240 1044 345 46 36 chr6 33497955 33499107 -148916135 + ERVL LTR ERVL 3739 5245 -519 528 324 54 16 chr6 33499137 33499510 -148915732 + LTR16B LTR ERVL 73 459 -5 375 130 32 2 chr6 33499629 33499701 -148915541 + MLT1F LTR MaLR 476 539 -3 304 291 0 29 chr6 33499811 33499854 -148915388 + CT-rich Low_complexity Low_complexity 1 44 -56 2350 103 0 3 chr6 33499854 33500155 -148915087 - AluY SINE Alu -11 300 1 304 291 0 29 chr6 33500155 33500214 -148915028 + CT-rich Low_complexity Low_complexity 44 100 0 263 204 46 9 chr6 33500227 33500335 -148914907 + CT-rich Low_complexity Low_complexity 3 114 0 256 275 140 31 chr6 33500568 33500951 -148914291 + L1ME3A LINE L1 5528 5951 -219 3648 127 0 4 chr6 33501048 33501560 -148913682 - MER9 LTR ERVK 0 511 2 6459 88 13 8 chr6 33502404 33503403 -148911839 + L1PA10 LINE L1 5164 6163 -5 2039 215 43 27 chr6 33503509 33503608 -148911634 + MLT1F1 LTR MaLR 6 102 -465 2356 136 5 24 chr6 33503608 33503990 -148911252 + THE1C LTR MaLR 1 375 0 2039 215 43 27 chr6 33503990 33504443 -148910799 + MLT1F1 LTR MaLR 102 567 0 1472 218 25 0 chr6 33504510 33504795 -148910447 - AluJb SINE Alu -19 293 2 1666 223 88 47 chr6 33504959 33505245 -148909997 + MLT1E3 LTR MaLR 3 276 -348 2234 100 0 40 chr6 33505245 33505566 -148909676 + AluYa5 SINE Alu 1 308 -3 1666 223 88 47 chr6 33505566 33505827 -148909415 + MLT1E3 LTR MaLR 276 572 -52 182 265 0 0 chr6 33505963 33506012 -148909230 - L2 LINE L2 0 3313 3265 207 260 40 0 chr6 33506060 33506110 -148909132 - L2 LINE L2 -553 2761 2710 195 100 0 0 chr6 33506941 33506971 -148908271 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 33507605 33507627 -148907615 + GC_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr6 33511407 33511432 -148903810 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 190 341 93 23 chr6 33511439 33511568 -148903674 + L3 LINE CR1 888 1025 -552 187 330 70 17 chr6 33511581 33511696 -148903546 - L2 LINE L2 -2 3311 3191 353 193 0 0 chr6 33511701 33511758 -148903484 - MER30 DNA MER1_type -2 228 172 1567 337 48 34 chr6 33512148 33513196 -148902046 + HERV16 LTR ERVL 2035 3096 -1900 518 176 20 0 chr6 33513282 33513384 -148901858 + AluSp/q SINE Alu 201 304 -9 210 37 0 0 chr6 33513664 33513691 -148901551 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2062 116 4 0 chr6 33513692 33513968 -148901274 - AluSq SINE Alu -36 277 1 2143 143 0 0 chr6 33514115 33514423 -148900819 + AluSg SINE Alu 1 308 -2 186 43 0 0 chr6 33515079 33515102 -148900140 + (T)n Simple_repeat Simple_repeat 1 23 0 7240 84 54 4 chr6 33515102 33516078 -148899164 - SVA Other Other -216 1170 146 942 148 0 0 chr6 33517748 33517903 -148897339 + MSTA LTR MaLR 1 155 -273 888 228 0 0 chr6 33517904 33518097 -148897145 + MSTB1-int LTR MaLR 287 479 -1172 1951 237 27 36 chr6 33518107 33518669 -148896573 + MSTB1-int LTR MaLR 1078 1634 -17 1685 212 66 15 chr6 33518685 33519096 -148896146 + MSTB1 LTR MaLR 1 432 0 490 268 78 14 chr6 33519115 33519257 -148895985 - MER21B LTR ERV1 -694 169 19 1817 239 21 24 chr6 33519356 33519867 -148895375 - MER21B-int LTR ERV1 -50 4141 3632 1618 268 30 45 chr6 33520006 33520580 -148894662 - MER21B-int LTR ERV1 -747 3444 2880 4076 242 120 46 chr6 33520586 33521902 -148893340 + L1M4 LINE L1 3242 4750 -1396 2322 71 51 0 chr6 33521902 33522196 -148893046 + AluY SINE Alu 1 309 -2 4076 242 120 46 chr6 33522196 33522824 -148892418 + L1M4 LINE L1 4750 5330 -816 540 233 9 84 chr6 33522825 33523040 -148892202 + L1MC/D LINE L1 4835 5033 -1113 609 182 0 0 chr6 33523046 33523145 -148892097 + FLAM_A SINE Alu 1 99 -43 1831 198 55 57 chr6 33523153 33523918 -148891324 + L1MC/D LINE L1 4993 5763 -596 778 219 233 3 chr6 33523926 33524269 -148890973 - Charlie1 DNA MER1_type -994 1767 40 648 248 22 12 chr6 33524498 33524706 -148890536 + L1PB4 LINE L1 5964 6302 0 186 103 0 0 chr6 33524750 33524779 -148890463 + (TG)n Simple_repeat Simple_repeat 2 30 0 1851 158 80 3 chr6 33528769 33529118 -148886124 + Tigger1 DNA MER2_type 2043 2418 0 2724 267 155 28 chr6 33530336 33530946 -148884296 + L2 LINE L2 18 550 -2764 2005 227 89 20 chr6 33530946 33531532 -148883710 + MLT1E2 LTR MaLR 1 626 0 2724 267 155 28 chr6 33531532 33532376 -148882866 + L2 LINE L2 550 1656 -1658 692 336 61 14 chr6 33532376 33532819 -148882423 + LTR16B LTR ERVL 1 464 0 511 358 39 16 chr6 33533519 33534155 -148881087 + HERV16 LTR ERVL 871 1546 -3450 2883 326 39 33 chr6 33534202 33535958 -148879284 + HERV16 LTR ERVL 1666 3504 -1900 500 354 31 0 chr6 33536132 33536361 -148878881 + HERV16 LTR ERVL 4158 4393 -1092 293 349 48 36 chr6 33536971 33537447 -148877795 + HERV16 LTR ERVL 4779 5260 -504 715 315 42 16 chr6 33537461 33537842 -148877400 + LTR16B LTR ERVL 69 459 -5 389 189 0 0 chr6 33537964 33538038 -148877204 + MLT1F1 LTR MaLR 491 564 -3 343 191 39 39 chr6 33538181 33538359 -148876883 + CT-rich Low_complexity Low_complexity 3 180 0 384 285 131 30 chr6 33538585 33538883 -148876359 + L1ME3A LINE L1 5545 5872 -298 234 170 0 0 chr6 33538962 33539009 -148876233 - LTR66 LTR ERVL -170 440 394 311 243 29 0 chr6 33539009 33539079 -148876163 - L1MC4 LINE L1 -1351 6691 6620 438 77 0 0 chr6 33539970 33540035 -148875207 - MER41A LTR ERV1 -88 466 402 6432 93 9 4 chr6 33540389 33541930 -148873312 + L1PA10 LINE L1 4619 6163 -5 1943 228 40 29 chr6 33542015 33542114 -148873128 + MLT1F1 LTR MaLR 6 102 -465 2168 126 55 25 chr6 33542114 33542478 -148872764 + THE1C LTR MaLR 1 375 0 1943 228 40 29 chr6 33542478 33542934 -148872308 + MLT1F1 LTR MaLR 102 567 0 1647 205 0 3 chr6 33542998 33543295 -148871947 - AluJb SINE Alu -16 296 1 2196 206 79 54 chr6 33543457 33543990 -148871252 + MLT1E3 LTR MaLR 3 554 -70 1418 224 14 10 chr6 33543990 33544285 -148870957 + AluJo SINE Alu 1 296 -16 2196 206 79 54 chr6 33544285 33544358 -148870884 + MLT1E3 LTR MaLR 554 624 0 226 204 0 0 chr6 33544481 33544530 -148870712 - L2 LINE L2 0 3313 3265 214 284 161 0 chr6 33544578 33544659 -148870583 - L2 LINE L2 -553 2761 2668 233 151 0 38 chr6 33546785 33546838 -148868404 + G-rich Low_complexity Low_complexity 3 53 0 3777 184 63 45 chr6 33549631 33550568 -148864674 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 33551034 33551059 -148864183 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 253 304 11 43 chr6 33551103 33551195 -148864047 + L3 LINE CR1 934 1022 -555 200 316 88 26 chr6 33551208 33551322 -148863920 - L2 LINE L2 -2 3311 3191 435 117 0 1 chr6 33551325 33551409 -148863833 - MER30 DNA MER1_type 0 230 140 391 280 89 19 chr6 33551819 33551976 -148863266 + ERVL LTR ERVL 1989 2156 -3608 344 122 0 0 chr6 33552482 33552531 -148862711 + MLT1F LTR MaLR 491 539 -3 290 304 0 36 chr6 33552641 33552693 -148862549 + CT-rich Low_complexity Low_complexity 1 53 -55 2347 87 3 0 chr6 33552693 33553003 -148862239 - AluY SINE Alu 0 311 1 290 304 0 36 chr6 33553003 33553062 -148862180 + CT-rich Low_complexity Low_complexity 53 108 0 231 252 19 9 chr6 33553075 33553182 -148862060 + CT-rich Low_complexity Low_complexity 3 110 0 372 296 162 23 chr6 33553448 33553793 -148861449 + L1ME3A LINE L1 5559 5951 -219 248 235 0 0 chr6 33553813 33553881 -148861361 + L1MC4 LINE L1 6636 6703 -1339 242 278 0 0 chr6 33553837 33553927 -148861315 - L1MC4 LINE L1 -1339 6703 6614 * 3515 119 20 4 chr6 33554000 33554503 -148860739 - MER9 LTR ERVK 0 511 1 6220 83 20 13 chr6 33555334 33556332 -148858910 + L1PA10 LINE L1 5164 6163 -5 2103 226 44 28 chr6 33556420 33556519 -148858723 + MLT1F1 LTR MaLR 6 102 -465 2241 144 5 24 chr6 33556519 33556900 -148858342 + THE1C LTR MaLR 1 374 -1 2103 226 44 28 chr6 33556900 33557345 -148857897 + MLT1F1 LTR MaLR 102 559 -8 1352 218 25 0 chr6 33557422 33557702 -148857540 - AluJo SINE Alu -25 287 1 1900 219 96 46 chr6 33557865 33558151 -148857091 + MLT1E3 LTR MaLR 3 273 -351 2030 96 6 22 chr6 33558151 33558463 -148856779 + AluY SINE Alu 1 307 -4 1900 219 96 46 chr6 33558463 33558720 -148856522 + MLT1E3 LTR MaLR 273 573 -51 184 245 0 0 chr6 33558855 33558904 -148856338 - L2 LINE L2 0 3272 3224 207 300 67 22 chr6 33564386 33564476 -148850766 + L3 LINE CR1 934 1027 -550 205 313 70 17 chr6 33564488 33564603 -148850639 - L2 LINE L2 -2 3311 3191 409 128 0 1 chr6 33564606 33564690 -148850552 - MER30 DNA MER1_type 0 230 140 1818 317 70 50 chr6 33565100 33566585 -148848657 + ERVL LTR ERVL 1951 3465 -2189 803 315 23 23 chr6 33566714 33567060 -148848182 + ERVL LTR ERVL 3838 4160 -836 254 85 0 21 chr6 33567367 33567379 -148847863 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 254 85 0 21 chr6 33567379 33567426 -148847816 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 259 262 28 28 chr6 33567640 33567747 -148847495 + ERVL LTR ERVL 4582 4688 -308 788 323 36 16 chr6 33567853 33568237 -148847005 + LTR16B LTR ERVL 69 460 -4 367 218 0 0 chr6 33568353 33568431 -148846811 + MLT1F1 LTR MaLR 488 565 -2 204 281 18 0 chr6 33568492 33568549 -148846693 + L2 LINE L2 1780 1837 -1477 428 311 140 11 chr6 33568858 33569209 -148846033 + L1ME3A LINE L1 5554 5949 -221 1770 146 18 0 chr6 33569396 33569712 -148845530 - AluSq SINE Alu 0 321 1 44132 28 21 1 chr6 33570275 33576306 -148838936 + L1HS LINE L1 1 6155 0 432 0 0 0 chr6 33576306 33576354 -148838888 + (A)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chr6 33576473 33576493 -148838749 + (A)n Simple_repeat Simple_repeat 1 20 0 643 204 0 30 chr6 33577040 33577172 -148838070 + AluJb SINE Alu 159 286 -26 318 26 0 0 chr6 33577172 33577211 -148838031 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 1701 224 40 86 chr6 33577321 33577481 -148837761 + MLT1F1 LTR MaLR 15 181 -386 2065 126 3 0 chr6 33577481 33577783 -148837459 + AluSg SINE Alu 3 305 -5 1701 224 40 86 chr6 33577783 33578202 -148837040 + MLT1F1 LTR MaLR 181 567 0 2229 234 68 19 chr6 33578402 33578995 -148836247 + MLT1E3 LTR MaLR 1 622 -2 464 264 8 8 chr6 33579151 33579276 -148835966 - L2 LINE L2 -1 3312 3188 398 277 162 0 chr6 33579253 33579401 -148835841 - L2 LINE L2 -502 2812 2641 * 1394 170 4 29 chr6 33579777 33580110 -148835132 + AluJb SINE Alu 12 337 0 2268 167 41 7 chr6 33582937 33583351 -148831891 + MSTA LTR MaLR 1 428 0 2575 190 13 0 chr6 33583351 33583824 -148831418 + MSTA-int LTR MaLR 1 479 -1172 2268 239 37 21 chr6 33583833 33584398 -148830844 + MSTA-int LTR MaLR 1078 1651 0 1841 208 64 7 chr6 33584398 33584807 -148830435 + MSTB1 LTR MaLR 1 432 0 554 237 111 7 chr6 33584826 33584961 -148830281 - MER21B LTR ERV1 -694 169 21 4392 254 45 30 chr6 33585061 33586317 -148828925 - MER21B-int LTR ERV1 -50 4141 2868 536 264 14 10 chr6 33586322 33586530 -148828712 + L1M4 LINE L1 3250 3458 -2688 543 314 26 31 chr6 33586530 33586756 -148828486 + Harlequin LTR ERV1 785 1009 -6776 6891 53 10 39 chr6 33586977 33588290 -148826952 + L1PA7 LINE L1 4861 6146 -8 1052 317 32 25 chr6 33588302 33588930 -148826312 + Harlequin LTR ERV1 1401 2032 -5753 392 157 14 0 chr6 33588948 33589018 -148826224 + LTR18B LTR ERVL 332 402 -212 373 188 35 24 chr6 33589064 33589149 -148826093 + LTR18B LTR ERVL 268 353 -261 441 260 274 5 chr6 33589691 33589914 -148825328 - MER102a DNA MER1_type -3 327 45 655 312 71 63 chr6 33590565 33591155 -148824087 + Harlequin LTR ERV1 1371 1955 -5830 2274 84 0 3 chr6 33591155 33591452 -148823790 + AluY SINE Alu 1 296 -15 655 312 71 63 chr6 33591452 33591560 -148823682 + Harlequin LTR ERV1 1955 4914 -2871 363 313 0 8 chr6 33591600 33591731 -148823511 + Harlequin LTR ERV1 4411 4540 -2109 21 0 0 0 chr6 33592057 33592078 -148823164 + AT_rich Low_complexity Low_complexity 1 21 0 593 287 62 81 chr6 33592185 33592798 -148822444 + Harlequin LTR ERV1 3386 5490 -1159 312 344 0 0 chr6 33592859 33592949 -148822293 - L1MC4 LINE L1 -1338 6704 6615 312 341 23 0 chr6 33592872 33592960 -148822282 + L1MC4 LINE L1 6614 6703 -1339 300 53 0 0 chr6 33593015 33593053 -148822189 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1437 317 14 23 chr6 33593054 33593615 -148821627 + Harlequin LTR ERV1 7092 7647 -138 2141 196 32 21 chr6 33596990 33597557 -148817685 + L1MB2 LINE L1 4899 5475 -708 276 30 0 0 chr6 33597557 33597590 -148817652 + (CA)n Simple_repeat Simple_repeat 2 34 0 2141 196 32 21 chr6 33597590 33597846 -148817396 + L1MB2 LINE L1 5475 5727 -456 887 180 170 5 chr6 33597836 33598036 -148817206 + L1MB2 LINE L1 5938 6170 -1 * 426 194 0 0 chr6 33599776 33599848 -148815394 - FRAM/FAM SINE Alu -105 71 1 199 302 12 12 chr6 33600157 33600243 -148814999 - MIR3 SINE MIR -110 98 13 221 260 0 65 chr6 33601690 33601767 -148813475 + GA-rich Low_complexity Low_complexity 1 72 0 353 264 7 76 chr6 33602060 33602204 -148813038 - L1ME1 LINE L1 -6 6160 6027 904 139 52 17 chr6 33602495 33602667 -148812575 + FRAM SINE Alu 1 175 -1 7632 35 0 1 chr6 33603141 33604827 -148810415 + L1PA3 LINE L1 4504 6155 0 510 221 0 0 chr6 33605645 33605817 -148809425 + (TG)n Simple_repeat Simple_repeat 1 172 0 2251 91 0 0 chr6 33606719 33607026 -148808216 - AluSg SINE Alu -3 307 1 811 308 122 25 chr6 33607129 33607849 -148807393 + L2 LINE L2 2513 3307 -6 589 297 158 27 chr6 33607854 33607904 -148807338 + L1ME4a LINE L1 5542 5584 -537 1764 122 0 0 chr6 33607904 33608158 -148807084 + AluSx SINE Alu 47 300 -12 589 297 158 27 chr6 33608158 33608437 -148806805 + L1ME4a LINE L1 5584 5914 -207 1234 205 40 44 chr6 33608753 33609050 -148806192 - AluJo SINE Alu -6 296 1 1428 179 14 10 chr6 33609769 33610059 -148805183 - AluJb SINE Alu -19 293 3 413 279 30 131 chr6 33610342 33610487 -148804755 - L2 LINE L2 0 3272 3179 360 43 0 0 chr6 33610487 33610533 -148804709 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 413 279 30 131 chr6 33610533 33610724 -148804518 - L2 LINE L2 -93 3179 2970 251 256 26 68 chr6 33610893 33611010 -148804232 + MER5A DNA MER1_type 55 166 -23 * 717 142 9 0 chr6 33610936 33611042 -148804200 - MER5A DNA MER1_type -80 109 3 268 329 31 39 chr6 33611981 33612267 -148802975 - L1MC4a LINE L1 -1755 6053 5770 414 286 118 16 chr6 33612398 33612643 -148802599 + L1ME3 LINE L1 5632 5901 -261 1490 188 7 7 chr6 33612686 33612978 -148802264 + AluJb SINE Alu 1 292 -20 1960 252 99 17 chr6 33613642 33614360 -148800882 + L1ME2 LINE L1 5374 6162 -2 1012 207 18 0 chr6 33614406 33614623 -148800619 + L1MA4A LINE L1 3742 3962 -2184 5691 149 26 27 chr6 33614635 33616079 -148799163 + L1MA4A LINE L1 4861 6298 -5 302 73 0 109 chr6 33616504 33616559 -148798683 + MLT1B LTR MaLR 1 49 -341 * 1002 161 33 0 chr6 33616556 33616736 -148798506 + MLT1B LTR MaLR 205 390 0 275 305 49 44 chr6 33617157 33617337 -148797905 - MIR SINE MIR -63 199 21 237 328 0 0 chr6 33617400 33617467 -148797775 + MER82 DNA MER2_type 496 562 -91 180 195 98 0 chr6 33619875 33619916 -148795326 - MIR SINE MIR -98 164 120 181 367 0 51 chr6 33619984 33620063 -148795179 - MIR SINE MIR -165 97 23 607 163 98 0 chr6 33620093 33620216 -148795026 + Tigger1 DNA MER2_type 2042 2176 -242 2744 232 71 103 chr6 33620216 33620584 -148794658 + L2 LINE L2 295 673 -2641 1887 218 101 27 chr6 33620584 33621167 -148794075 + MLT1E2 LTR MaLR 1 626 0 2744 232 71 103 chr6 33621167 33622205 -148793037 + L2 LINE L2 673 1656 -1658 807 306 72 27 chr6 33622205 33622649 -148792593 + LTR16B LTR ERVL 1 464 0 2991 312 50 42 chr6 33623339 33624925 -148790317 + HERV16 LTR ERVL 858 2430 -2855 1895 129 7 0 chr6 33624925 33625204 -148790038 + AluSq SINE Alu 1 281 -32 294 29 0 0 chr6 33625208 33625243 -148789999 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2991 312 50 42 chr6 33625243 33626039 -148789203 + HERV16 LTR ERVL 2432 3385 -1900 939 359 46 30 chr6 33626231 33627317 -148787925 + HERV16 LTR ERVL 4145 5248 -516 480 329 18 0 chr6 33627337 33627501 -148787741 + LTR16B LTR ERVL 62 228 -236 941 208 15 15 chr6 33627511 33627708 -148787534 + MLT1F1 LTR MaLR 371 567 0 1520 174 7 10 chr6 33627781 33628069 -148787173 - AluJb SINE Alu -25 287 1 1891 241 90 21 chr6 33628242 33628765 -148786477 + MLT1E3 LTR MaLR 14 572 -52 1321 231 10 20 chr6 33628765 33629064 -148786178 + AluJo SINE Alu 1 296 -6 289 191 29 0 chr6 33629098 33629166 -148786076 + MLT1E3 LTR MaLR 555 624 0 218 204 0 0 chr6 33629301 33629350 -148785892 - L2 LINE L2 0 3313 3265 280 268 56 0 chr6 33629399 33629470 -148785772 - L2 LINE L2 -554 2760 2686 180 152 0 0 chr6 33630271 33630304 -148784938 + A-rich Low_complexity Low_complexity 1 33 0 1109 297 98 26 chr6 33634961 33635079 -148780163 - L2 LINE L2 -2 3311 3203 925 170 55 77 chr6 33635079 33635314 -148779928 - MER30 DNA MER1_type 0 230 1 1109 297 98 26 chr6 33635314 33636094 -148779148 - L2 LINE L2 -110 3203 2352 440 242 45 50 chr6 33636377 33636659 -148778583 + L1MEc LINE L1 2145 2386 -3829 812 203 38 0 chr6 33636742 33636900 -148778342 - FRAM SINE Alu -14 162 1 558 176 170 42 chr6 33637409 33637574 -148777668 + MER20 DNA MER1_type 32 217 -2 304 285 169 15 chr6 33637575 33637705 -148777537 - MIR SINE MIR -91 171 22 21 0 0 0 chr6 33639027 33639048 -148776194 + AT_rich Low_complexity Low_complexity 1 21 0 1528 226 46 27 chr6 33639222 33639699 -148775543 + L1MB4 LINE L1 4904 5389 -757 2114 117 0 7 chr6 33639710 33640009 -148775233 + AluSc SINE Alu 1 297 -12 3468 164 44 9 chr6 33640053 33640718 -148774524 + L1MB4 LINE L1 5493 6180 0 1132 169 4 24 chr6 33640862 33641099 -148774143 - MER4A LTR ERV1 -113 551 261 613 116 0 21 chr6 33641103 33641198 -148774044 - MER4A LTR ERV1 -571 93 1 404 236 40 0 chr6 33641217 33641365 -148773877 + L1MC5 LINE L1 7299 7452 -509 539 350 60 45 chr6 33641463 33642146 -148773096 + LTR57-int LTR ERVL 2726 3418 -1925 520 344 37 37 chr6 33642313 33642857 -148772385 + LTR57-int LTR ERVL 3619 4162 -1181 304 229 14 0 chr6 33643616 33643686 -148771556 + MER4B-int LTR ERV1 6000 6070 -688 1825 185 61 26 chr6 33643692 33644120 -148771122 + LTR47B LTR ERVL 1 443 0 675 269 60 60 chr6 33645364 33645465 -148769777 + L1MC5 LINE L1 7352 7452 -509 2951 179 16 11 chr6 33645465 33646017 -148769225 + MER41D LTR ERV1 3 557 0 675 269 60 60 chr6 33646017 33646347 -148768895 + L1MC5 LINE L1 7451 7783 -178 1983 194 16 34 chr6 33646349 33646905 -148768337 + L1MC3 LINE L1 7000 7692 -93 393 225 92 25 chr6 33646970 33647090 -148768152 + L1MC5 LINE L1 7790 7917 -44 1509 155 97 7 chr6 33647101 33647379 -148767863 + AluJo SINE Alu 1 303 -9 2762 170 42 5 chr6 33647450 33648027 -148767215 - L1MB3 LINE L1 0 6183 5586 180 277 123 65 chr6 33649135 33649290 -148765952 - MIR SINE MIR -25 237 74 945 109 32 19 chr6 33649772 33649928 -148765314 - L1MA5 LINE L1 0 6300 6143 7688 185 4 7 chr6 33649928 33651691 -148763551 + L1PB1 LINE L1 3770 5527 -624 1361 58 0 2 chr6 33651691 33651951 -148763291 - AluY SINE Alu 0 311 2 3633 94 54 15 chr6 33651952 33652485 -148762757 + L1PB1 LINE L1 5514 6067 -84 7924 165 19 110 chr6 33652486 33652962 -148762280 - L1MB3 LINE L1 -816 5330 4812 2247 85 41 0 chr6 33652962 33653255 -148761987 + AluSg SINE Alu 1 305 -5 7924 165 19 110 chr6 33653255 33654897 -148760345 - L1MB3 LINE L1 -1334 4812 3405 2634 181 93 58 chr6 33654898 33655413 -148759829 - MER65-int LTR ERV1 -757 1029 1090 2432 77 0 0 chr6 33655413 33655711 -148759531 + AluY SINE Alu 1 298 -13 2634 181 93 58 chr6 33655711 33655996 -148759246 - MER65-int LTR ERV1 -695 1091 817 2323 74 0 14 chr6 33656433 33656730 -148758512 + AluY SINE Alu 1 293 -18 21 36 0 0 chr6 33657580 33657608 -148757634 + AT_rich Low_complexity Low_complexity 1 28 0 309 259 54 45 chr6 33658158 33658270 -148756972 + L2 LINE L2 1700 1812 -1502 1935 271 143 56 chr6 33658272 33658798 -148756444 - HAL1 LINE L1 -10 2497 2018 1120 208 124 69 chr6 33658798 33659144 -148756098 + MLT1A1 LTR MaLR 1 365 0 1935 271 143 56 chr6 33659144 33660021 -148755221 - HAL1 LINE L1 -489 2018 972 226 356 46 26 chr6 33660082 33660276 -148754966 + L2 LINE L2 3116 3313 0 230 326 35 28 chr6 33660500 33660641 -148754601 + MIR SINE MIR 101 242 -20 261 347 24 14 chr6 33660655 33660868 -148754374 - L1ME LINE L1 -354 5767 5553 2012 64 4 16 chr6 33660876 33661156 -148754086 - AluY SINE Alu 0 312 36 2103 261 83 4 chr6 33661407 33661970 -148753272 + MER90 LTR ERV1 5 612 -2 1756 171 24 0 chr6 33662299 33662586 -148752656 + AluSx SINE Alu 1 294 -18 1134 168 35 15 chr6 33663021 33663223 -148752019 - MER3 DNA MER1_type -2 207 2 1778 191 57 17 chr6 33663225 33663576 -148751666 + MLT1A1 LTR MaLR 1 365 0 1423 184 0 106 chr6 33663639 33663970 -148751272 + AluJo SINE Alu 1 296 -16 4122 218 100 41 chr6 33664292 33664643 -148750599 + Charlie1a DNA MER1_type 7 336 -2425 2013 141 3 13 chr6 33664643 33664948 -148750294 + AluSx SINE Alu 1 302 -10 4122 218 100 41 chr6 33664948 33665540 -148749702 + Charlie1a DNA MER1_type 336 892 -1869 1383 197 48 7 chr6 33665540 33665835 -148749407 + AluJo SINE Alu 1 307 -5 4122 218 100 41 chr6 33665835 33666258 -148748984 + Charlie1a DNA MER1_type 892 1455 0 274 233 181 35 chr6 33667029 33667145 -148748097 + L3 LINE CR1 956 1088 -489 * 2317 276 111 29 chr6 33667112 33668245 -148746997 - L2 LINE L2 -2 3311 2108 305 271 308 0 chr6 33668318 33668451 -148746791 - MER5A DNA MER1_type -7 182 9 318 299 132 7 chr6 33668480 33668624 -148746618 - MER5B DNA MER1_type -16 162 1 209 33 33 0 chr6 33668711 33668741 -148746501 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 501 326 47 63 chr6 33668763 33669125 -148746117 - LTR67 LTR ERVL -98 459 104 2880 146 124 10 chr6 33669647 33670146 -148745096 - MER21A LTR ERV1 0 931 376 1281 135 90 12 chr6 33670151 33670396 -148744846 - MER21A LTR ERV1 -667 264 1 2132 178 0 29 chr6 33670405 33670781 -148744461 - MLT1A1 LTR MaLR 0 365 1 6040 198 49 63 chr6 33670858 33671225 -148744017 + L1MB7 LINE L1 3576 3947 -2237 613 238 0 24 chr6 33671225 33671351 -148743891 + FLAM_A SINE Alu 4 126 -7 6040 198 49 63 chr6 33671351 33671434 -148743808 + L1MB7 LINE L1 3947 4030 -2154 2122 138 126 31 chr6 33671434 33671824 -148743418 - MSTA LTR MaLR -1 427 1 6040 198 49 63 chr6 33671824 33672451 -148742791 + L1MB7 LINE L1 4030 4665 -1519 1869 164 6 13 chr6 33672451 33672763 -148742479 + AluJo SINE Alu 1 310 -2 6040 198 49 63 chr6 33672763 33673013 -148742229 + L1MB7 LINE L1 4665 4917 -1267 1829 218 21 46 chr6 33673013 33673490 -148741752 + MLT1C LTR MaLR 3 467 0 6040 198 49 63 chr6 33673490 33673607 -148741635 + L1MB7 LINE L1 4917 5034 -1150 2332 85 0 0 chr6 33673607 33673889 -148741353 + AluSg SINE Alu 1 282 -28 201 39 0 0 chr6 33673889 33673915 -148741327 + (TA)n Simple_repeat Simple_repeat 2 27 0 6040 198 49 63 chr6 33673915 33674049 -148741193 + L1MB7 LINE L1 5033 5167 -1017 374 125 111 0 chr6 33674049 33674121 -148741121 + L1MA7 LINE L1 6211 6290 -1 6040 198 49 63 chr6 33674121 33674311 -148740931 + L1MB7 LINE L1 5167 5358 -826 2153 134 0 0 chr6 33674311 33674609 -148740633 + AluSx SINE Alu 3 300 -12 6040 198 49 63 chr6 33674609 33674727 -148740515 + L1MB7 LINE L1 5358 5476 -708 2147 104 0 4 chr6 33674727 33675007 -148740235 + AluSg SINE Alu 1 279 -31 294 95 0 0 chr6 33675010 33675052 -148740190 + (CA)n Simple_repeat Simple_repeat 2 43 0 6040 198 49 63 chr6 33675052 33675697 -148739545 + L1MB7 LINE L1 5478 6102 -82 6002 138 54 7 chr6 33675780 33676062 -148739180 - L1MA4A LINE L1 -6 6297 6030 357 43 0 0 chr6 33676062 33676109 -148739133 + (CA)n Simple_repeat Simple_repeat 1 47 0 6002 138 54 7 chr6 33676109 33677304 -148737938 - L1MA4A LINE L1 -273 6030 4750 1055 152 76 5 chr6 33677366 33677550 -148737692 - AluJb SINE Alu -16 296 100 2117 181 15 2 chr6 33677551 33677955 -148737287 + L1 LINE L1 3439 3847 -2299 230 196 0 0 chr6 33678515 33678561 -148736681 - L2 LINE L2 -5 3308 3263 747 201 151 102 chr6 33678748 33679171 -148736071 + L1ME3A LINE L1 5727 6170 0 801 199 64 6 chr6 33679938 33680109 -148735133 - MER3 DNA MER1_type 0 209 29 323 378 67 31 chr6 33680536 33680729 -148734513 + L2 LINE L2 3048 3247 -25 256 161 18 18 chr6 33681027 33681083 -148734159 - MIR SINE MIR -111 151 96 512 266 91 35 chr6 33683190 33683389 -148731853 + MIR SINE MIR 5 214 -48 1843 140 6 56 chr6 33686826 33687148 -148728094 - AluJb SINE Alu -6 306 1 1976 259 65 44 chr6 33687304 33688305 -148726937 - L1MEd LINE L1 -4862 1257 318 30 0 0 0 chr6 33688570 33688600 -148726642 + AT_rich Low_complexity Low_complexity 1 30 0 450 222 69 21 chr6 33688602 33688746 -148726496 - L1M4 LINE L1 -917 5229 5079 2275 123 113 49 chr6 33689540 33689948 -148725294 + Tigger2a DNA MER2_type 1 434 0 225 282 153 0 chr6 33690855 33690940 -148724302 + L2 LINE L2 3132 3229 -43 1673 183 138 42 chr6 33696911 33697337 -148717905 + MLT1C LTR MaLR 1 467 0 200 339 0 35 chr6 33697911 33698026 -148717216 + C-rich Low_complexity Low_complexity 3 113 0 334 270 197 26 chr6 33700749 33700901 -148714341 - MIR3 SINE MIR -28 180 3 291 290 10 30 chr6 33700956 33701071 -148714171 + CT-rich Low_complexity Low_complexity 1 196 0 1459 190 9 8 chr6 33701673 33701963 -148713279 + MLT1D LTR MaLR 231 505 0 806 221 23 6 chr6 33702252 33702424 -148712818 + MER5B DNA MER1_type 1 175 -3 998 276 75 41 chr6 33702460 33702898 -148712344 + L2 LINE L2 2853 3305 -8 394 317 81 6 chr6 33704449 33704610 -148710632 - MIR SINE MIR -70 192 20 189 0 0 0 chr6 33704867 33704888 -148710354 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 43960 32 22 1 chr6 33704888 33710904 -148704338 - L1PA3 LINE L1 -10 6145 1 195 69 0 0 chr6 33710960 33710989 -148704253 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1946 129 4 0 chr6 33710989 33711268 -148703974 - AluSx SINE Alu -32 280 1 195 100 0 0 chr6 33711292 33711322 -148703920 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 927 270 159 31 chr6 33711322 33711837 -148703405 - L2 LINE L2 -13 3300 2712 225 0 0 0 chr6 33711839 33711864 -148703378 + (ATTG)n Simple_repeat Simple_repeat 1 25 0 656 197 0 41 chr6 33711864 33711986 -148703256 - FLAM_C SINE Alu -25 118 2 357 290 30 0 chr6 33712232 33712332 -148702910 - MIR3 SINE MIR 0 208 106 2307 85 7 0 chr6 33712444 33712751 -148702491 + AluSc SINE Alu 1 309 0 949 149 29 6 chr6 33713072 33713246 -148701996 + MER53 DNA DNA 9 186 -3 481 339 15 20 chr6 33713275 33713470 -148701772 - L2 LINE L2 -182 3090 2897 323 337 67 36 chr6 33713655 33713848 -148701394 - L2 LINE L2 -685 2629 2431 211 319 0 14 chr6 33714036 33714105 -148701137 + CT-rich Low_complexity Low_complexity 4 71 0 220 195 0 0 chr6 33714366 33714407 -148700835 - MIR3 SINE MIR -51 157 117 590 266 74 10 chr6 33714579 33714782 -148700460 - L2 LINE L2 0 3313 3098 407 341 7 0 chr6 33714988 33715123 -148700119 + L2 LINE L2 2897 3032 -240 496 302 81 9 chr6 33715123 33715413 -148699829 - L2 LINE L2 -209 3104 2797 534 281 182 6 chr6 33715417 33715752 -148699490 - L2 LINE L2 -682 2632 2239 26 0 0 0 chr6 33715781 33715807 -148699435 + AT_rich Low_complexity Low_complexity 1 26 0 2318 78 13 3 chr6 33716782 33717091 -148698151 + AluSp SINE Alu 2 313 0 499 163 0 0 chr6 33717286 33717366 -148697876 - MIR SINE MIR -110 152 73 317 301 168 9 chr6 33717455 33717568 -148697674 - L2 LINE L2 0 3313 3183 745 143 16 16 chr6 33717882 33718008 -148697234 + FLAM_C SINE Alu 1 126 -7 360 277 54 34 chr6 33718192 33718340 -148696902 + L1MC4a LINE L1 5780 5930 -1878 527 235 181 47 chr6 33718768 33719045 -148696197 - HAL1 LINE L1 -4 2503 2190 351 0 0 0 chr6 33719073 33719112 -148696130 + (CA)n Simple_repeat Simple_repeat 2 40 0 1865 139 3 23 chr6 33719219 33719529 -148695713 + AluSx SINE Alu 7 310 -2 2153 81 16 10 chr6 33720357 33720666 -148694576 + AluY SINE Alu 1 311 0 2262 236 29 11 chr6 33720766 33721325 -148693917 + MER90 LTR ERV1 2 570 -5 437 297 47 20 chr6 33721449 33721597 -148693645 - L2 LINE L2 0 3313 3162 357 261 53 106 chr6 33721989 33722177 -148693065 + L1MC4 LINE L1 7864 8041 -1 394 207 46 0 chr6 33722937 33723024 -148692218 + MLT1C LTR MaLR 2 92 -375 1672 155 0 69 chr6 33723026 33723361 -148691881 + AluJb SINE Alu 1 312 0 545 159 0 9 chr6 33723361 33723468 -148691774 + GA-rich Low_complexity Low_complexity 2 107 0 1455 198 120 11 chr6 33723480 33723829 -148691413 + MLT1C LTR MaLR 81 467 0 231 170 0 0 chr6 33723839 33723886 -148691356 + (TG)n Simple_repeat Simple_repeat 2 48 0 240 261 120 22 chr6 33724577 33724669 -148690573 - L2 LINE L2 -187 3085 2985 186 333 0 16 chr6 33724710 33724773 -148690469 - L2 LINE L2 -5 3308 3247 381 202 102 3 chr6 33725794 33725908 -148689334 - L1MC/D LINE L1 -412 5758 5652 342 315 55 7 chr6 33728790 33728936 -148686306 + MIR SINE MIR 50 202 -60 1230 178 58 3 chr6 33729729 33730036 -148685206 - MER33 DNA MER1_type -22 302 1 205 200 0 0 chr6 33730821 33730861 -148684381 + A-rich Low_complexity Low_complexity 1 40 0 1980 100 11 4 chr6 33731065 33731344 -148683898 + AluSq SINE Alu 1 281 -32 258 32 0 0 chr6 33731346 33731377 -148683865 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2228 104 0 0 chr6 33732531 33732828 -148682414 + AluSq SINE Alu 9 305 -8 236 259 26 35 chr6 33732870 33732986 -148682256 + GA-rich Low_complexity Low_complexity 6 120 0 1025 137 35 25 chr6 33733713 33733839 -148681403 + Charlie5 DNA MER1_type 2 132 -2492 1859 131 65 0 chr6 33733839 33734130 -148681112 + AluSx SINE Alu 1 310 -2 1025 137 35 25 chr6 33734130 33734200 -148681042 + Charlie5 DNA MER1_type 132 200 -2424 940 134 51 106 chr6 33734198 33734473 -148680769 + Charlie5 DNA MER1_type 2352 2611 -1 * 1664 134 29 35 chr6 33735258 33735572 -148679670 - AluJb SINE Alu 0 312 1 375 270 74 20 chr6 33736254 33736402 -148678840 - MIR SINE MIR -71 191 36 650 209 23 0 chr6 33738220 33738349 -148676893 - MER94 DNA DNA -1 133 2 587 291 23 17 chr6 33738728 33738900 -148676342 - MER5A DNA MER1_type -16 173 1 210 320 19 0 chr6 33738904 33738981 -148676261 - MIR SINE MIR -109 99 36 2255 112 0 3 chr6 33739316 33739630 -148675612 - AluSq SINE Alu 0 313 1 965 259 63 32 chr6 33740052 33740430 -148674812 + L1MC4a LINE L1 5544 5933 -1875 1756 145 0 60 chr6 33740766 33741083 -148674159 + AluJb SINE Alu 13 310 -2 301 219 156 39 chr6 33741093 33741221 -148674021 + L1ME4a LINE L1 5410 5552 -569 861 240 133 13 chr6 33741318 33741551 -148673691 - MIR SINE MIR 0 262 2 2193 64 0 0 chr6 33741611 33741920 -148673322 + AluY SINE Alu 1 309 0 1252 156 33 0 chr6 33741927 33742139 -148673103 - MER20 DNA MER1_type 0 219 1 385 256 73 46 chr6 33742356 33742575 -148672667 + L1ME4a LINE L1 5894 6118 -3 311 278 46 76 chr6 33742580 33742843 -148672399 + L1ME LINE L1 5319 5573 -548 918 139 0 0 chr6 33743087 33743238 -148672004 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1998 113 3 3 chr6 33743240 33743523 -148671719 - AluSq SINE Alu -30 283 1 371 127 0 0 chr6 33744032 33744087 -148671155 + MLT2D LTR ERVL 1 55 -359 253 320 112 11 chr6 33744279 33744457 -148670785 + L3 LINE CR1 1084 1279 -298 1770 161 32 84 chr6 33744502 33744618 -148670624 + MLT1B LTR MaLR 7 127 -263 4533 108 35 51 chr6 33744618 33744985 -148670257 - MER4E LTR ERV1 0 766 394 2162 99 3 3 chr6 33744985 33745287 -148669955 - AluSx SINE Alu -9 303 2 4533 108 35 51 chr6 33745287 33745698 -148669544 - MER4E LTR ERV1 -372 394 1 1770 161 32 84 chr6 33745698 33745986 -148669256 + MLT1B LTR MaLR 127 390 0 296 271 8 81 chr6 33746141 33746283 -148668959 + L1MC4a LINE L1 5517 5651 -470 2478 172 82 64 chr6 33746283 33746894 -148668348 + LTR26E LTR ERV1 1 622 0 296 271 8 81 chr6 33746894 33746911 -148668331 + L1MC4a LINE L1 5651 5668 -453 325 285 95 88 chr6 33746950 33747234 -148668008 - L2 LINE L2 0 3313 3028 390 234 81 8 chr6 33747261 33747385 -148667857 + L1ME4a LINE L1 5986 6118 -3 755 140 185 0 chr6 33747564 33747721 -148667521 + MER53 DNA DNA 1 186 -3 2206 95 10 3 chr6 33747882 33748188 -148667054 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr6 33748485 33748516 -148666726 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr6 33749023 33749060 -148666182 + AT_rich Low_complexity Low_complexity 1 37 0 205 314 0 0 chr6 33749087 33749138 -148666104 + L2 LINE L2 3190 3240 -32 278 229 115 32 chr6 33749203 33749360 -148665882 + L1MC4a LINE L1 5853 6022 -1786 1714 196 0 0 chr6 33749880 33750192 -148665050 - AluJb SINE Alu 0 312 1 180 222 0 0 chr6 33751388 33751424 -148663818 + MIR SINE MIR 111 146 -116 2571 191 96 36 chr6 33752285 33752355 -148662887 - MER69 DNA AcHobo -3 2523 2459 2045 100 0 37 chr6 33752355 33752676 -148662566 + AluSc SINE Alu 1 309 0 2571 191 96 36 chr6 33752676 33753422 -148661820 - MER69 DNA AcHobo -67 2459 1650 2199 219 151 11 chr6 33753452 33754015 -148661227 - MER69 DNA AcHobo -1835 691 50 1120 162 43 32 chr6 33754492 33754745 -148660497 - L1MA8 LINE L1 -133 6158 5903 194 292 42 14 chr6 33755956 33756028 -148659214 - L2 LINE L2 -39 3274 3201 365 351 0 15 chr6 33756115 33756246 -148658996 - MER91A DNA MER1_type -8 188 60 201 255 39 0 chr6 33756477 33756528 -148658714 - L2 LINE L2 -2 3270 3218 356 264 192 10 chr6 33756817 33757010 -148658232 - L1MC4a LINE L1 -1702 6106 5879 29 0 0 0 chr6 33757010 33757039 -148658203 + AT_rich Low_complexity Low_complexity 1 29 0 2157 74 60 0 chr6 33757153 33757436 -148657806 - AluY SINE Alu -11 300 1 1587 240 49 48 chr6 33757446 33758013 -148657229 - L1MC4a LINE L1 -1926 5882 5315 207 239 0 0 chr6 33758378 33758445 -148656797 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 314 362 26 0 chr6 33758505 33758621 -148656621 + MIR SINE MIR 11 129 -133 363 327 93 16 chr6 33758644 33758901 -148656341 - L2 LINE L2 -2361 953 677 871 244 95 95 chr6 33758914 33759174 -148656068 - MER21B LTR ERV1 -417 446 184 2327 90 0 3 chr6 33759174 33759486 -148655756 + AluSq SINE Alu 1 311 -2 871 244 95 95 chr6 33759486 33759574 -148655668 - MER21B LTR ERV1 -678 185 98 445 211 67 19 chr6 33759697 33759801 -148655441 + Tigger5 DNA MER2_type 2215 2323 0 296 150 167 0 chr6 33759801 33759861 -148655381 - MER21B LTR ERV1 -793 70 1 301 258 21 21 chr6 33760366 33760459 -148654783 + L3b LINE CR1 1290 1382 -201 237 329 38 0 chr6 33761862 33761941 -148653301 + MIR3 SINE MIR 116 197 -11 231 283 0 0 chr6 33762046 33762106 -148653136 + T-rich Low_complexity Low_complexity 5 64 0 216 0 0 0 chr6 33762313 33762337 -148652905 + (CA)n Simple_repeat Simple_repeat 2 25 0 296 313 101 46 chr6 33762351 33762568 -148652674 - L1MC4a LINE L1 -1901 5907 5679 567 295 82 62 chr6 33762596 33762952 -148652290 - L1MC4a LINE L1 -1161 4985 4623 432 322 96 17 chr6 33763425 33763578 -148651664 - L2 LINE L2 0 3313 3173 1988 107 0 0 chr6 33763578 33763850 -148651392 - AluSg1 SINE Alu 0 309 38 432 322 96 17 chr6 33763850 33763988 -148651254 - L2 LINE L2 -140 3173 2999 492 278 56 140 chr6 33764037 33764117 -148651125 - L2 LINE L2 -755 2559 2474 6829 57 7 0 chr6 33764117 33764963 -148650279 + L1PA7 LINE L1 5288 6139 -15 492 278 56 140 chr6 33764963 33765249 -148649993 - L2 LINE L2 -840 2474 2165 868 137 0 0 chr6 33765249 33765373 -148649869 + AluJo SINE Alu 4 127 -175 492 278 56 140 chr6 33765373 33765429 -148649813 - L2 LINE L2 -1149 2165 2106 982 177 0 0 chr6 33765429 33765593 -148649649 + AluJo SINE Alu 137 300 -2 492 278 56 140 chr6 33765593 33765852 -148649390 - L2 LINE L2 -1208 2106 1934 527 314 171 14 chr6 33765861 33766300 -148648942 - L2 LINE L2 -1776 1538 1031 503 303 116 45 chr6 33766907 33767329 -148647913 - L1 LINE L1 -1126 5020 4569 186 43 0 0 chr6 33767672 33767695 -148647547 + (T)n Simple_repeat Simple_repeat 1 23 0 185 287 143 43 chr6 33768253 33768483 -148646759 - L2 LINE L2 -343 2971 2719 2158 64 3 3 chr6 33770651 33770957 -148644285 - AluY SINE Alu 0 306 1 1517 221 107 43 chr6 33772514 33772972 -148642270 + MLT1E LTR MaLR 1 536 -57 2120 113 0 7 chr6 33772972 33773282 -148641960 - AluSx SINE Alu -4 308 1 1517 221 107 43 chr6 33773282 33773344 -148641898 + MLT1E LTR MaLR 536 593 0 292 247 155 10 chr6 33773379 33773476 -148641766 + L2 LINE L2 3162 3272 0 646 315 81 8 chr6 33773642 33773877 -148641365 + MIR SINE MIR 10 261 -1 2786 44 0 6 chr6 33773915 33774255 -148640987 - L1PA5 LINE L1 -5 6149 5812 22 0 0 0 chr6 33774307 33774329 -148640913 + AT_rich Low_complexity Low_complexity 1 22 0 236 322 154 28 chr6 33774445 33774659 -148640583 - L2 LINE L2 -181 3091 2851 866 284 72 0 chr6 33775450 33775686 -148639556 + MIR SINE MIR 9 261 -1 22 80 0 0 chr6 33776257 33776307 -148638935 + AT_rich Low_complexity Low_complexity 1 50 0 247 313 84 99 chr6 33777468 33777800 -148637442 + L2 LINE L2 2943 3269 -3 501 269 31 31 chr6 33777826 33777956 -148637286 - MIR3 SINE MIR -77 131 2 207 225 59 34 chr6 33778860 33778965 -148636277 + MER5A DNA MER1_type 26 183 -6 228 186 29 14 chr6 33779782 33779852 -148635390 + (TA)n Simple_repeat Simple_repeat 1 71 0 591 161 201 20 chr6 33780136 33780285 -148634957 - MER5A DNA MER1_type 0 189 14 317 304 134 0 chr6 33780278 33780390 -148634852 + L2 LINE L2 3145 3271 -1 * 288 292 83 47 chr6 33780987 33781162 -148634080 - MIR SINE MIR -56 206 23 1182 156 0 50 chr6 33781720 33781958 -148633284 - AluJo SINE Alu 0 312 87 266 299 197 7 chr6 33782030 33782177 -148633065 - MIR3 SINE MIR -4 204 30 193 282 26 64 chr6 33782375 33782453 -148632789 - MIR SINE MIR -78 184 110 538 299 117 5 chr6 33783116 33783313 -148631929 - MIR SINE MIR -16 246 28 218 312 11 0 chr6 33784258 33784351 -148630891 + (CA)n Simple_repeat Simple_repeat 2 95 0 221 280 0 0 chr6 33784431 33784481 -148630761 - L2 LINE L2 0 3313 3264 399 300 64 0 chr6 33785825 33785965 -148629277 - MIR SINE MIR -41 221 73 1296 164 17 116 chr6 33786011 33786238 -148629004 - MER33 DNA MER1_type -2261 324 143 2296 60 23 3 chr6 33786238 33786540 -148628702 + AluY SINE Alu 1 308 -3 1296 164 17 116 chr6 33786540 33786665 -148628577 - MER33 DNA MER1_type -2442 143 7 357 288 76 33 chr6 33786875 33787059 -148628183 + MIR SINE MIR 20 211 -51 315 0 0 0 chr6 33787169 33787204 -148628038 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 225 65 0 0 chr6 33787767 33787798 -148627444 + (TC)n Simple_repeat Simple_repeat 1 31 0 460 323 103 36 chr6 33788780 33789275 -148625967 + L2 LINE L2 2450 2977 -337 7239 57 6 6 chr6 33789332 33791048 -148624194 - L1PA7 LINE L1 0 6154 4435 251 310 107 83 chr6 33791068 33791358 -148623884 + L2 LINE L2 2968 3264 -8 327 285 133 53 chr6 33791693 33791844 -148623398 - MIR3 SINE MIR -43 165 3 569 304 149 5 chr6 33792932 33793133 -148622109 + MIR SINE MIR 32 261 -1 348 274 140 43 chr6 33794165 33794329 -148620913 - MIR3 SINE MIR -14 194 15 944 236 41 24 chr6 33795289 33795535 -148619707 + MIR SINE MIR 2 251 -11 579 205 180 31 chr6 33795727 33795888 -148619354 - MER5A DNA MER1_type -1 188 4 2000 138 0 0 chr6 33797648 33797946 -148617296 + AluSx SINE Alu 6 303 -9 1617 126 119 0 chr6 33797948 33798225 -148617017 + AluSx SINE Alu 1 310 -2 267 31 0 0 chr6 33798490 33798522 -148616720 + (TAG)n Simple_repeat Simple_repeat 1 32 0 307 284 53 64 chr6 33798801 33798995 -148616247 - MIR SINE MIR -41 221 32 5444 101 2 23 chr6 33800013 33800807 -148614435 - L1PA11 LINE L1 0 6174 5397 11332 195 42 25 chr6 33800886 33802611 -148612631 - L1 LINE L1 -1439 5409 3715 2130 112 0 7 chr6 33802611 33802916 -148612326 - AluSq SINE Alu -10 303 1 11332 195 42 25 chr6 33802916 33804753 -148610489 - L1 LINE L1 -3133 3715 1772 2385 73 0 0 chr6 33804753 33805054 -148610188 - AluY SINE Alu -10 301 1 11332 195 42 25 chr6 33805054 33806223 -148609019 - L1 LINE L1 -5076 1772 624 230 362 26 9 chr6 33806331 33806447 -148608795 - L1M2 LINE L1 -6065 784 667 192 77 0 0 chr6 33806510 33806536 -148608706 + (CAG)n Simple_repeat Simple_repeat 3 28 0 188 268 0 0 chr6 33806566 33806607 -148608635 - L2 LINE L2 -36 3277 3237 1864 137 0 10 chr6 33806629 33806921 -148608321 + AluSx SINE Alu 15 303 -9 373 331 194 19 chr6 33806983 33807303 -148607939 + L2 LINE L2 2919 3294 -19 778 209 19 6 chr6 33807389 33807547 -148607695 + FRAM SINE Alu 1 160 -6 239 171 0 0 chr6 33807551 33807586 -148607656 + Alu SINE Alu 2 36 -264 2476 55 0 3 chr6 33807886 33808195 -148607047 + AluY SINE Alu 2 309 -2 464 234 39 23 chr6 33808634 33808762 -148606480 - L2 LINE L2 -5 3308 3179 204 125 0 0 chr6 33810380 33810412 -148604830 + (TCC)n Simple_repeat Simple_repeat 2 33 0 315 164 0 0 chr6 33810474 33810535 -148604707 + CT-rich Low_complexity Low_complexity 2 62 0 2316 83 3 0 chr6 33811819 33812119 -148603123 + AluY SINE Alu 1 301 -10 2492 30 7 3 chr6 33812119 33812421 -148602821 + AluY SINE Alu 1 303 -8 360 148 102 45 chr6 33812853 33812941 -148602301 + MER91C DNA MER1_type 35 127 -13 347 252 25 76 chr6 33814271 33814390 -148600852 - L2 LINE L2 -38 3275 3163 289 340 64 13 chr6 33814484 33814640 -148600602 - L2 LINE L2 -433 2881 2718 1207 282 49 27 chr6 33814656 33815107 -148600135 + MLT1J LTR MaLR 1 461 -50 467 311 37 21 chr6 33815138 33815328 -148599914 - L2 LINE L2 -620 2694 2502 538 258 102 67 chr6 33815507 33815790 -148599452 - L2 LINE L2 -1 3312 3020 811 170 0 0 chr6 33816713 33816848 -148598394 - FLAM_C SINE Alu -3 140 6 3080 146 14 70 chr6 33817019 33817355 -148597887 - L1 LINE L1 -1189 4957 4604 2277 93 7 0 chr6 33817355 33817655 -148597587 - AluSg SINE Alu -8 302 1 3080 146 14 70 chr6 33817655 33818177 -148597065 - L1 LINE L1 -1542 4604 4224 1733 149 10 5 chr6 33818172 33818748 -148596494 + L1MA5 LINE L1 5553 6253 -47 * 1616 103 5 0 chr6 33818749 33818973 -148596269 + AluSx SINE Alu 1 225 -87 816 103 0 0 chr6 33818973 33819090 -148596152 + AluSg/x SINE Alu 185 301 -11 201 191 95 0 chr6 33819310 33819352 -148595890 - MER91A DNA MER1_type -27 169 124 413 294 119 17 chr6 33819557 33819734 -148595508 + MIR3 SINE MIR 1 195 -13 284 219 179 3 chr6 33820565 33820675 -148594567 - MIR SINE MIR -62 146 30 186 194 0 0 chr6 33821273 33821304 -148593938 + L2 LINE L2 3025 3055 -217 1818 157 56 15 chr6 33821755 33822079 -148593163 + MER2 DNA MER2_type 1 337 -8 209 285 236 8 chr6 33822360 33822483 -148592759 - MIR3 SINE MIR -29 179 29 395 198 58 12 chr6 33823449 33823535 -148591707 - MIR3 SINE MIR -11 197 108 212 272 235 0 chr6 33823555 33823636 -148591606 - MER91B DNA MER1_type 0 190 91 301 328 8 42 chr6 33823663 33823782 -148591460 - MER91B DNA MER1_type -75 115 1 2474 68 0 0 chr6 33823803 33824111 -148591131 - AluY SINE Alu -3 308 1 1408 185 3 48 chr6 33824177 33824490 -148590752 + AluJb SINE Alu 13 311 -1 425 300 50 6 chr6 33824882 33825042 -148590200 + MIR SINE MIR 67 233 -29 2135 105 0 16 chr6 33825739 33826044 -148589198 + AluSc SINE Alu 1 300 -9 189 321 38 0 chr6 33826047 33826100 -148589142 - MIR3 SINE MIR -40 168 114 718 260 96 29 chr6 33826503 33826893 -148588349 + L1MC5 LINE L1 7127 7498 -544 560 239 70 111 chr6 33826943 33827218 -148588024 + L1MC4 LINE L1 7492 7777 -265 1617 176 17 3 chr6 33827218 33827514 -148587728 - AluJb SINE Alu -7 305 6 560 239 70 111 chr6 33827514 33827576 -148587666 + L1MC4 LINE L1 7777 7812 -230 2151 81 3 3 chr6 33827576 33827891 -148587351 - AluSq SINE Alu 0 315 1 560 239 70 111 chr6 33827891 33827965 -148587277 + L1MC4 LINE L1 7812 7888 -154 435 150 75 0 chr6 33827965 33828045 -148587197 - AluS SINE Alu -7 305 220 243 283 0 0 chr6 33828159 33828212 -148587030 + L2 LINE L2 3261 3313 0 345 216 74 117 chr6 33828304 33828466 -148586776 - MIR3 SINE MIR -49 159 5 219 216 8 136 chr6 33828958 33829083 -148586159 - MIR3 SINE MIR -17 191 83 2194 94 3 3 chr6 33829135 33829442 -148585800 + AluSp SINE Alu 1 307 -6 1395 176 11 26 chr6 33829731 33829998 -148585244 + AluJo SINE Alu 1 263 -49 411 298 83 36 chr6 33830838 33831006 -148584236 + MER5B DNA MER1_type 2 177 -1 231 308 28 56 chr6 33831010 33831153 -148584089 - MIR3 SINE MIR -60 148 10 276 293 160 9 chr6 33831218 33831430 -148583812 - L2 LINE L2 -345 2969 2726 411 234 126 0 chr6 33831441 33831552 -148583690 - L2 LINE L2 0 3313 3189 558 294 91 75 chr6 33831848 33832286 -148582956 + L2 LINE L2 2808 3252 -20 182 291 0 36 chr6 33832310 33832365 -148582877 + L2 LINE L2 3217 3269 -3 201 74 0 0 chr6 33832682 33832709 -148582533 + (T)n Simple_repeat Simple_repeat 1 27 0 468 201 189 12 chr6 33832732 33832896 -148582346 - L1ME3A LINE L1 -295 5875 5683 389 297 34 2 chr6 33832905 33833071 -148582171 - L1ME3A LINE L1 -544 5620 5450 423 0 0 0 chr6 33833082 33833129 -148582113 + (TG)n Simple_repeat Simple_repeat 2 48 0 375 246 123 0 chr6 33833397 33833519 -148581723 + MER104 DNA Tc2 6 142 -38 799 196 7 7 chr6 33833533 33833681 -148581561 + MSTD LTR MaLR 1 148 -248 601 135 0 0 chr6 33833688 33833777 -148581465 + MSTD LTR MaLR 308 396 0 653 211 8 8 chr6 33833896 33834057 -148581185 + FLAM_A SINE Alu 1 161 0 2317 64 0 3 chr6 33834102 33834398 -148580844 + AluSc SINE Alu 1 295 -14 958 133 122 89 chr6 33834725 33834995 -148580247 - Tigger7 DNA MER2_type 0 2487 2209 888 201 7 0 chr6 33835001 33835155 -148580087 - Tigger7 DNA MER2_type -569 164 10 297 257 239 0 chr6 33835176 33835285 -148579957 + L2 LINE L2 3136 3270 -2 3067 124 154 109 chr6 33835876 33836091 -148579151 + L1MC3 LINE L1 6879 7083 -702 309 264 23 11 chr6 33836091 33836178 -148579064 + MLT1F1 LTR MaLR 35 122 -445 3067 124 154 109 chr6 33836178 33836737 -148578505 + L1MC3 LINE L1 7083 7778 -7 201 176 0 0 chr6 33837096 33837130 -148578112 + A-rich Low_complexity Low_complexity 1 34 0 2491 46 0 0 chr6 33839084 33839386 -148575856 + AluSc SINE Alu 2 303 -6 264 310 110 33 chr6 33839467 33839881 -148575361 + L2 LINE L2 2713 3232 -81 914 44 0 11 chr6 33839966 33840146 -148575096 - L1PA4 LINE L1 -3 6152 5929 505 251 109 6 chr6 33840452 33840622 -148574620 + MIR SINE MIR 30 221 -41 1316 209 177 62 chr6 33840785 33841336 -148573906 + MER39 LTR ERV1 6 705 -2 239 0 32 0 chr6 33841421 33841452 -148573790 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1975 132 10 0 chr6 33841937 33842232 -148573010 - AluJo SINE Alu -14 298 1 304 285 197 18 chr6 33842233 33842573 -148572669 + LTR37B LTR ERV1 68 468 0 426 220 75 38 chr6 33842573 33842759 -148572483 - L1MC5 LINE L1 -415 7546 7354 2113 100 7 3 chr6 33842972 33843272 -148571970 - AluSx SINE Alu -11 301 1 280 321 82 15 chr6 33843281 33843415 -148571827 - L1MC4 LINE L1 -568 7474 7332 1102 216 259 5 chr6 33843423 33843793 -148571449 + LTR41 LTR ERVL 1 464 -309 492 210 57 150 chr6 33843838 33844014 -148571228 + L2 LINE L2 1560 1698 -1616 2012 84 12 59 chr6 33844014 33844336 -148570906 - AluSq SINE Alu -6 307 1 492 210 57 150 chr6 33844336 33844459 -148570783 + L2 LINE L2 1698 1831 -1483 2234 82 3 3 chr6 33844674 33844978 -148570264 - AluY SINE Alu -7 304 1 1013 158 64 161 chr6 33844978 33845159 -148570083 - AluJo SINE Alu -5 297 161 2234 102 0 10 chr6 33845159 33845473 -148569769 - AluSq SINE Alu -2 311 1 1013 158 64 161 chr6 33845473 33845620 -148569622 - AluJo SINE Alu -141 161 1 230 0 33 0 chr6 33845635 33845665 -148569577 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5159 97 31 28 chr6 33845672 33846862 -148568380 - SVA Other Other -955 1369 60 186 43 0 0 chr6 33846870 33846893 -148568349 + (GGGAGA)n Simple_repeat Simple_repeat 4 26 0 1238 276 44 62 chr6 33846957 33847621 -148567621 - L1ME3 LINE L1 -212 5950 5275 2870 138 22 16 chr6 33847621 33848115 -148567127 - LOR1a LTR ERV1 0 497 1 1238 276 44 62 chr6 33848115 33848388 -148566854 - L1ME3 LINE L1 -887 5275 5028 1952 172 22 11 chr6 33848388 33848749 -148566493 + MLT1A1 LTR MaLR 1 365 0 1238 276 44 62 chr6 33848749 33848915 -148566327 - L1ME3 LINE L1 -1134 5028 4860 1730 241 77 65 chr6 33848929 33849092 -148566150 - L2 LINE L2 0 3313 3153 2118 97 0 7 chr6 33849092 33849382 -148565860 + AluSc SINE Alu 3 290 -19 1730 241 77 65 chr6 33849382 33850217 -148565025 - L2 LINE L2 -160 3153 2305 210 348 89 0 chr6 33850273 33850385 -148564857 + MER5A DNA MER1_type 68 189 0 481 211 11 0 chr6 33850603 33850693 -148564549 + MER81 DNA DNA 24 114 0 2987 138 74 25 chr6 33850795 33850988 -148564254 - MER41C LTR ERV1 0 554 372 227 53 0 26 chr6 33850988 33851026 -148564216 + (TA)n Simple_repeat Simple_repeat 2 38 0 2987 138 74 25 chr6 33851026 33851210 -148564032 - MER41C LTR ERV1 -182 372 199 1950 128 14 0 chr6 33851210 33851500 -148563742 - AluSg SINE Alu -16 294 1 2987 138 74 25 chr6 33851500 33851649 -148563593 - MER41C LTR ERV1 -355 199 1 520 153 29 18 chr6 33851853 33851971 -148563271 - MLT1E2 LTR MaLR 0 626 431 519 260 121 55 chr6 33852019 33852292 -148562950 - LTR43 LTR ERV1 -125 477 187 1224 246 77 30 chr6 33852644 33853149 -148562093 - MLT1E2 LTR MaLR -69 497 1 447 260 39 0 chr6 33853160 33853264 -148561978 - L2 LINE L2 -19 3294 3187 277 122 20 0 chr6 33853320 33853369 -148561873 - L1MA10 LINE L1 -7 6327 6278 3389 120 0 7 chr6 33853606 33854071 -148561171 - L1PA15 LINE L1 0 6165 5704 1686 231 12 10 chr6 33854076 33854475 -148560767 - L1ME1 LINE L1 -44 6122 5723 2234 174 21 137 chr6 33854646 33855216 -148560026 + MLT1D LTR MaLR 1 504 -1 554 271 125 51 chr6 33856190 33856526 -148558716 + MLT1J1 LTR MaLR 60 420 -26 2228 101 7 0 chr6 33856833 33857129 -148558113 - AluSq SINE Alu -15 298 1 486 302 107 31 chr6 33857133 33857818 -148557424 + L1MC4a LINE L1 4612 5348 -798 1643 278 44 19 chr6 33857872 33858463 -148556779 + L1MC4a LINE L1 5333 5938 -1870 2226 109 0 6 chr6 33859385 33859697 -148555545 - AluY SINE Alu -1 310 1 2230 80 0 11 chr6 33859700 33859986 -148555256 - AluSc SINE Alu -16 293 11 822 219 81 12 chr6 33860147 33860393 -148554849 - L1M4 LINE L1 -1436 4710 4448 2662 148 22 9 chr6 33860409 33860856 -148554386 - L1MA6 LINE L1 -287 6013 5561 311 264 149 0 chr6 33861039 33861160 -148554082 - MER112 DNA MER1_type -9 251 113 201 39 0 0 chr6 33861174 33861200 -148554042 + (TG)n Simple_repeat Simple_repeat 1 26 0 2481 53 3 0 chr6 33861344 33861646 -148553596 - AluY SINE Alu -8 303 1 2309 78 0 0 chr6 33861867 33862161 -148553081 + AluY SINE Alu 1 294 -17 4047 158 82 24 chr6 33862954 33863790 -148551452 - L1MA10 LINE L1 -1 6333 5449 2441 93 0 0 chr6 33864031 33864341 -148550901 + AluY SINE Alu 1 310 -1 769 125 71 0 chr6 33864426 33864538 -148550704 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr6 33864538 33864571 -148550671 + AT_rich Low_complexity Low_complexity 1 33 0 671 223 0 15 chr6 33864623 33864753 -148550489 - FLAM_A SINE Alu -2 131 4 28 29 0 0 chr6 33864759 33864794 -148550448 + AT_rich Low_complexity Low_complexity 1 35 0 2416 102 0 3 chr6 33865092 33865405 -148549837 - AluSq SINE Alu -1 312 1 1197 136 0 0 chr6 33866383 33866559 -148548683 - AluSg/x SINE Alu -3 309 134 2324 87 0 3 chr6 33866976 33867276 -148547966 + AluY SINE Alu 1 299 -12 2268 115 0 6 chr6 33867281 33867631 -148547611 + AluSg SINE Alu 1 348 0 532 231 54 21 chr6 33868627 33868813 -148546429 - L1M4 LINE L1 -3768 2378 2187 2213 104 0 13 chr6 33868970 33869269 -148545973 - AluSg SINE Alu -15 295 1 632 202 0 25 chr6 33869274 33869436 -148545806 - FLAM_A SINE Alu 0 159 1 463 325 76 41 chr6 33869502 33869962 -148545280 - L1M4 LINE L1 -3151 2995 2514 2374 85 10 0 chr6 33869962 33870256 -148544986 - AluSg SINE Alu -13 297 1 463 325 76 41 chr6 33870256 33870309 -148544933 - L1M4 LINE L1 -3632 2514 2464 1391 208 19 7 chr6 33870397 33870666 -148544576 - AluJo SINE Alu -40 272 1 33 73 0 0 chr6 33870807 33870875 -148544367 + AT_rich Low_complexity Low_complexity 1 68 0 1204 224 40 77 chr6 33870875 33871048 -148544194 - L1MA9 LINE L1 -42 6270 6092 1934 129 33 10 chr6 33871048 33871350 -148543892 - AluJb SINE Alu -3 309 1 1204 224 40 77 chr6 33871350 33871577 -148543665 - L1MA9 LINE L1 -220 6092 5885 788 71 0 0 chr6 33871646 33871744 -148543498 + L1PA5 LINE L1 1 98 -6048 * 37985 38 28 2 chr6 33871732 33877132 -148538110 + L1PA5 LINE L1 611 6146 -8 1965 199 8 0 chr6 33877195 33877551 -148537691 + MLT1A1 LTR MaLR 7 365 0 1836 251 82 14 chr6 33877560 33878317 -148536925 + L1ME1 LINE L1 2840 3647 -2499 * 8251 106 4 6 chr6 33878316 33879457 -148535785 - THE1A-int LTR MaLR -441 1139 1 2550 99 8 33 chr6 33879457 33879821 -148535421 - THE1A LTR MaLR 0 355 1 1227 296 35 14 chr6 33879821 33880337 -148534905 + L1ME1 LINE L1 3644 4170 -1976 833 181 8 8 chr6 33880348 33880481 -148534761 + AluJo SINE Alu 3 135 -177 269 214 95 8 chr6 33880485 33880611 -148534631 + L1ME1 LINE L1 4156 4292 -1854 2227 274 19 36 chr6 33880647 33881450 -148533792 + L1ME1 LINE L1 5378 6166 0 256 352 28 21 chr6 33881463 33881608 -148533634 + L1M4c LINE L1 1650 1795 -4589 537 313 55 13 chr6 33881654 33882037 -148533205 + L1M4c LINE L1 2010 2408 -4155 23 33 0 0 chr6 33883511 33883541 -148531701 + GC_rich Low_complexity Low_complexity 1 30 0 180 125 0 0 chr6 33887558 33887590 -148527652 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 1658 299 91 29 chr6 33887740 33888856 -148526386 - L2 LINE L2 -4 3309 2128 204 359 85 0 chr6 33888976 33889082 -148526160 - MER5A DNA MER1_type -63 126 12 241 335 81 19 chr6 33889104 33889265 -148525977 + MER5A DNA MER1_type 19 189 0 207 0 0 0 chr6 33889341 33889364 -148525878 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2815 69 3 0 chr6 33889649 33889996 -148525246 - THE1A LTR MaLR -5 350 3 553 289 50 100 chr6 33890003 33890464 -148524778 - LTR67 LTR ERVL -115 442 5 25 0 0 0 chr6 33890744 33890769 -148524473 + AT_rich Low_complexity Low_complexity 1 25 0 464 245 0 20 chr6 33891004 33891102 -148524140 - MER5C DNA MER1_type -228 96 1 235 244 67 44 chr6 33891178 33891268 -148523974 + L1MEd LINE L1 6 97 -6022 415 341 52 25 chr6 33891606 33891970 -148523272 + L1MEd LINE L1 464 837 -5282 2020 130 3 0 chr6 33891977 33892308 -148522934 + AluSp SINE Alu 1 332 0 2923 254 65 49 chr6 33892452 33893143 -148522099 + L1MEc LINE L1 36 752 -5644 2224 85 21 0 chr6 33893143 33893424 -148521818 + AluSp SINE Alu 1 287 -26 2923 254 65 49 chr6 33893424 33893811 -148521431 + L1MEc LINE L1 752 1131 -5265 324 180 0 15 chr6 33893811 33893884 -148521358 + Alu SINE Alu 1 47 -253 6942 176 28 6 chr6 33893884 33895836 -148519406 + L1MA9 LINE L1 3974 5969 -343 732 266 108 31 chr6 33895881 33896167 -148519075 + MER57A LTR ERV1 84 391 -12 216 0 0 0 chr6 33896174 33896198 -148519044 + (T)n Simple_repeat Simple_repeat 1 24 0 497 170 30 0 chr6 33896201 33896301 -148518941 + L1MA9 LINE L1 5974 6076 -236 311 106 0 0 chr6 33896301 33896348 -148518894 + MER4A LTR ERV1 1 47 -617 1307 97 29 14 chr6 33896376 33896583 -148518659 + L1MA9 LINE L1 6103 6312 0 1642 241 50 8 chr6 33896583 33897107 -148518135 + L1MB8 LINE L1 4406 4951 -1195 * 2675 154 32 56 chr6 33897080 33897581 -148517661 + L1MA9 LINE L1 5283 5771 -541 995 197 53 35 chr6 33897586 33897899 -148517343 - MSTD LTR MaLR 0 396 39 973 98 0 0 chr6 33897901 33898023 -148517219 + FLAM_C SINE Alu 1 122 -21 331 49 0 0 chr6 33898067 33898108 -148517134 - MSTD LTR MaLR -387 41 1 1568 165 72 18 chr6 33898121 33898512 -148516730 + L1MA9 LINE L1 5781 6290 -22 4069 203 35 26 chr6 33898546 33899803 -148515439 + L1MB8 LINE L1 4906 6172 -6 1635 310 60 32 chr6 33899810 33901202 -148514040 + HERV16 LTR ERVL 1079 2592 -2623 28 29 0 0 chr6 33901210 33901245 -148513997 + AT_rich Low_complexity Low_complexity 1 35 0 14215 135 29 31 chr6 33901248 33901862 -148513380 - L1MA1 LINE L1 0 7721 7108 1720 167 11 11 chr6 33901862 33902149 -148513093 - AluJb SINE Alu -19 293 7 14215 135 29 31 chr6 33902149 33902468 -148512774 - L1MA1 LINE L1 -613 7108 6790 1596 166 63 27 chr6 33902468 33902769 -148512473 - AluJb SINE Alu 0 312 1 14215 135 29 31 chr6 33902769 33902787 -148512455 - L1MA1 LINE L1 -931 6790 6773 2432 99 0 0 chr6 33902787 33903099 -148512143 - AluSx SINE Alu 0 312 1 14215 135 29 31 chr6 33903099 33903507 -148511735 - L1MA1 LINE L1 -948 6773 6366 2164 120 0 13 chr6 33903507 33903807 -148511435 - AluSc SINE Alu -13 296 1 14215 135 29 31 chr6 33903807 33905012 -148510230 - L1MA1 LINE L1 -1355 6366 5161 2216 107 10 0 chr6 33905012 33905301 -148509941 - AluSx SINE Alu -20 292 1 14215 135 29 31 chr6 33905301 33906641 -148508601 - L1MA1 LINE L1 -2560 5161 3821 2503 123 80 8 chr6 33906641 33907040 -148508202 - MSTA LTR MaLR 0 428 1 9769 154 22 9 chr6 33907040 33908669 -148506573 - MSTA-int LTR MaLR 0 1651 1 2216 173 36 10 chr6 33908669 33909086 -148506156 - MSTA LTR MaLR 0 428 1 14215 135 29 31 chr6 33909086 33910429 -148504813 - L1MA1 LINE L1 -3897 3824 2419 2255 105 9 16 chr6 33910435 33910750 -148504492 - AluSp SINE Alu 0 313 1 7090 158 39 3 chr6 33910750 33912437 -148502805 - L1P4 LINE L1 -436 5725 3971 231 213 0 0 chr6 33913529 33913576 -148501666 + L2 LINE L2 3138 3184 -88 545 216 0 0 chr6 33914229 33914331 -148500911 - MLT2D LTR ERVL -75 339 238 208 191 21 0 chr6 33916810 33916857 -148498385 + A-rich Low_complexity Low_complexity 2 49 0 195 224 20 0 chr6 33916857 33916906 -148498336 - MIR SINE MIR -56 206 157 532 285 142 11 chr6 33917042 33917309 -148497933 - L3 LINE CR1 -25 1552 1251 277 227 30 15 chr6 33917346 33917412 -148497830 - L1ME LINE L1 -6001 69 3 226 282 101 26 chr6 33917435 33917630 -148497612 - L2 LINE L2 0 3272 2979 641 243 89 28 chr6 33917677 33917891 -148497351 + MIR SINE MIR 26 252 -10 2241 119 0 0 chr6 33919018 33919313 -148495929 + AluSx SINE Alu 3 297 -15 578 301 85 19 chr6 33919826 33920085 -148495157 - MLT1I LTR MaLR -13 396 121 1463 219 7 4 chr6 33920838 33921117 -148494125 - AluJo SINE Alu -32 280 1 11788 182 49 12 chr6 33921149 33921537 -148493705 - L1PA15 LINE L1 0 6868 6496 2202 98 27 10 chr6 33921537 33921833 -148493409 - AluSg SINE Alu -7 303 3 11788 182 49 12 chr6 33921833 33924712 -148490530 - L1PA15 LINE L1 -372 6496 3482 2057 141 3 3 chr6 33924712 33925009 -148490233 - AluSx SINE Alu -15 297 1 11788 182 49 12 chr6 33925009 33925143 -148490099 - L1PA15 LINE L1 -3386 3482 3354 1257 206 14 1 chr6 33925137 33925452 -148489790 - L1PA15 LINE L1 -3821 3028 2710 * 192 40 0 0 chr6 33928406 33928431 -148486811 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2160 99 14 0 chr6 33928433 33928717 -148486525 - AluSq SINE Alu -25 288 1 267 350 43 7 chr6 33928986 33929126 -148486116 - MER5A DNA MER1_type 0 189 45 220 192 51 51 chr6 33929230 33929308 -148485934 - MER5A DNA MER1_type -103 86 9 212 319 152 1 chr6 33931542 33931687 -148483555 - MIR SINE MIR -57 205 41 2264 91 14 0 chr6 33932361 33932657 -148482585 - AluSc SINE Alu -9 300 1 2105 128 10 3 chr6 33932661 33932958 -148482284 - AluSx SINE Alu -13 299 1 2277 93 17 0 chr6 33934157 33934457 -148480785 + AluSc SINE Alu 1 305 -4 1815 156 3 37 chr6 33934513 33934834 -148480408 + AluSx SINE Alu 1 310 -2 348 283 20 0 chr6 33935576 33935675 -148479567 + MIR SINE MIR 45 145 -63 2270 183 42 11 chr6 33936744 33937192 -148478050 + MLT1C LTR MaLR 6 467 0 2038 223 95 13 chr6 33937413 33937937 -148477305 + MLT1F1 LTR MaLR 1 567 0 474 190 100 10 chr6 33938427 33938527 -148476715 - MER45A DNA AcHobo 0 178 70 645 218 52 15 chr6 33938648 33938900 -148476342 + LTR16C LTR ERVL 167 491 0 200 340 100 27 chr6 33939050 33939200 -148476042 - L2 LINE L2 -528 2786 2626 718 205 24 12 chr6 33939760 33939926 -148475316 - MER5B DNA MER1_type 0 178 11 783 235 101 0 chr6 33940029 33940208 -148475034 - MLT1J LTR MaLR -313 198 2 183 289 79 0 chr6 33940909 33940985 -148474257 - MIR SINE MIR -107 155 74 2293 126 95 18 chr6 33941990 33942378 -148472864 - MSTA LTR MaLR -7 421 4 813 146 0 44 chr6 33942402 33942539 -148472703 + FLAM_C SINE Alu 3 133 0 1036 216 69 10 chr6 33942561 33942871 -148472371 + MSTC-int LTR MaLR 1227 1580 0 1813 133 200 3 chr6 33942871 33943186 -148472056 + MSTC LTR MaLR 1 377 -51 381 235 108 13 chr6 33943187 33943426 -148471816 + L1MC4a LINE L1 5265 5550 -626 1223 146 275 0 chr6 33943436 33943716 -148471526 - LTR29 LTR ERV1 -262 360 4 1040 139 8 105 chr6 33943752 33943986 -148471256 + Charlie5 DNA MER1_type 2345 2551 -34 1999 128 7 20 chr6 33943986 33944283 -148470959 - AluSx SINE Alu -19 293 1 1040 139 8 105 chr6 33944283 33944315 -148470927 + Charlie5 DNA MER1_type 2551 2585 0 23 0 0 0 chr6 33944349 33944372 -148470870 + AT_rich Low_complexity Low_complexity 1 23 0 398 259 170 30 chr6 33944545 33944946 -148470296 + L1MC/D LINE L1 5304 5760 -2048 3603 175 28 49 chr6 33945100 33945849 -148469393 - MER44D DNA MER2_type 0 605 1 1419 211 83 52 chr6 33945913 33946266 -148468976 + MER84 LTR ERVI 14 387 -120 4424 101 79 8 chr6 33946266 33946546 -148468696 - LTR8 LTR ERV1 0 691 432 1787 104 7 62 chr6 33946546 33946835 -148468407 + AluSq SINE Alu 35 307 -6 4424 101 79 8 chr6 33946835 33947199 -148468043 - LTR8 LTR ERV1 -259 432 1 1419 211 83 52 chr6 33947199 33947324 -148467918 + MER84 LTR ERVI 387 507 0 482 299 85 14 chr6 33947324 33947678 -148467564 + L1MC4a LINE L1 5562 5940 -1868 29 47 0 0 chr6 33947869 33947912 -148467330 + AT_rich Low_complexity Low_complexity 1 43 0 957 244 122 35 chr6 33948238 33948433 -148466809 + MER58B DNA MER1_type 3 236 -2184 2153 84 0 42 chr6 33948433 33948743 -148466499 - AluSx SINE Alu -15 297 1 957 244 122 35 chr6 33948743 33948859 -148466383 + MER58B DNA MER1_type 236 341 0 255 331 7 22 chr6 33949903 33950039 -148465203 - L2 LINE L2 -2 3270 3137 21 0 0 0 chr6 33950575 33950596 -148464646 + GC_rich Low_complexity Low_complexity 1 21 0 899 111 19 167 chr6 33952284 33952500 -148462742 - MER30B DNA MER1_type 0 190 7 2167 136 3 0 chr6 33954746 33955056 -148460186 + AluSx SINE Alu 2 312 0 344 249 96 8 chr6 33955833 33955958 -148459284 - MIR SINE MIR -61 147 37 * 436 300 33 0 chr6 33955956 33956076 -148459166 - L2 LINE L2 -10 3262 3139 1248 253 155 39 chr6 33956614 33957113 -148458129 - MER20B DNA MER1_type -6 777 173 2465 68 0 13 chr6 33957113 33957420 -148457822 - AluY SINE Alu -8 303 1 1248 253 155 39 chr6 33957420 33957616 -148457626 - MER20B DNA MER1_type -610 173 1 258 254 0 0 chr6 33957714 33957773 -148457469 + (CA)n Simple_repeat Simple_repeat 2 60 0 1084 238 66 14 chr6 33958496 33958782 -148456460 - AluJo SINE Alu -1 301 1 252 78 0 62 chr6 33959040 33959104 -148456138 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1461 195 0 14 chr6 33959105 33959382 -148455860 - AluJb SINE Alu -39 273 1 652 160 0 0 chr6 33960124 33960224 -148455018 - Tigger1 DNA MER2_type 0 2418 2319 10044 115 151 82 chr6 33960224 33960880 -148454362 - Tigger1 DNA MER2_type -236 2182 1573 2173 108 0 17 chr6 33960880 33961176 -148454066 + AluSq SINE Alu 1 291 -22 10044 115 151 82 chr6 33961176 33961187 -148454055 - Tigger1 DNA MER2_type -845 1573 1564 754 206 0 0 chr6 33961187 33961313 -148453929 + FLAM_C SINE Alu 2 127 -16 10044 115 151 82 chr6 33961313 33962560 -148452682 - Tigger1 DNA MER2_type -854 1564 1 2287 109 10 0 chr6 33962904 33963208 -148452034 - AluSx SINE Alu -5 307 1 347 254 29 58 chr6 33964639 33964685 -148450557 + MER94 DNA DNA 1 47 -87 2325 115 0 0 chr6 33964685 33964990 -148450252 + AluSx SINE Alu 1 305 -7 347 254 29 58 chr6 33964990 33965081 -148450161 + MER94 DNA DNA 47 134 0 214 233 144 11 chr6 33967530 33967620 -148447622 - MER5A DNA MER1_type -22 167 66 1941 113 38 34 chr6 33967620 33967911 -148447331 - AluSx SINE Alu -20 292 1 216 204 74 0 chr6 33969647 33969701 -148445541 - L2 LINE L2 0 3313 3256 523 287 127 68 chr6 33971275 33971628 -148443614 - MLT1H1 LTR MaLR 0 547 152 2054 116 10 7 chr6 33971628 33971920 -148443322 + AluSx SINE Alu 1 293 -19 523 287 127 68 chr6 33971920 33972040 -148443202 - MLT1H1 LTR MaLR -395 152 41 1747 143 46 83 chr6 33972081 33972430 -148442812 + MER1B DNA MER1_type 1 336 -1 285 216 62 52 chr6 33973628 33973725 -148441517 - L1MD3 LINE L1 -6 7989 7892 4238 163 27 60 chr6 33973732 33974802 -148440440 - L1MB4 LINE L1 -1 6179 5147 2601 53 7 0 chr6 33975329 33975630 -148439612 - AluY SINE Alu -8 303 1 233 351 79 16 chr6 33975708 33976152 -148439090 - L1ME LINE L1 -383 5779 5308 1660 178 86 14 chr6 33976184 33976532 -148438710 + MLT1A2 LTR MaLR 1 373 -1 207 0 0 0 chr6 33976548 33976571 -148438671 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 270 236 0 0 chr6 33976592 33976664 -148438578 - L1MB4 LINE L1 -1112 5034 4963 199 197 56 42 chr6 33977296 33977367 -148437875 + MIR SINE MIR 56 127 -135 441 293 60 5 chr6 33977529 33977744 -148437498 - L1MC4a LINE L1 -1875 5933 5707 2365 92 13 0 chr6 33977807 33978112 -148437130 + AluSp SINE Alu 1 309 -4 377 169 26 0 chr6 33978124 33978201 -148437041 + L1ME3A LINE L1 5862 5940 -230 233 367 33 43 chr6 33978539 33978749 -148436493 - L1MC4a LINE L1 -2152 5656 5449 186 43 0 0 chr6 33978756 33978779 -148436463 + (TG)n Simple_repeat Simple_repeat 2 24 0 24 53 0 0 chr6 33979788 33979826 -148435416 + AT_rich Low_complexity Low_complexity 1 38 0 1695 167 14 11 chr6 33979844 33980120 -148435122 + AluJo SINE Alu 21 297 -15 956 176 15 60 chr6 33980220 33980419 -148434823 + MER20 DNA MER1_type 30 219 0 270 216 19 161 chr6 33980532 33980694 -148434548 + L2 LINE L2 3175 3313 0 223 395 6 17 chr6 33980788 33980965 -148434277 - MIR SINE MIR -79 183 9 2244 119 0 0 chr6 33981008 33981311 -148433931 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr6 33982051 33982072 -148433170 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 33982694 33982715 -148432527 + AT_rich Low_complexity Low_complexity 1 21 0 287 329 66 24 chr6 33984355 33984522 -148430720 + L2 LINE L2 2571 2744 -570 2044 196 16 13 chr6 33984527 33984886 -148430356 + L1 LINE L1 3888 4250 -1896 243 0 0 0 chr6 33984886 33984913 -148430329 + (CA)n Simple_repeat Simple_repeat 2 28 0 2044 196 16 13 chr6 33984913 33985003 -148430239 + L1 LINE L1 4250 4338 -1808 1933 188 46 73 chr6 33985458 33985936 -148429306 + MLT1D LTR MaLR 38 502 -3 1496 203 108 87 chr6 33985945 33986156 -148429086 + MLT1D LTR MaLR 3 208 -297 892 65 0 32 chr6 33986156 33986280 -148428962 - L1PA14 LINE L1 -4 6157 6038 1496 203 108 87 chr6 33986280 33986561 -148428681 + MLT1D LTR MaLR 208 505 0 1604 102 119 0 chr6 33988223 33988459 -148426783 - AluSc SINE Alu -15 294 31 207 0 0 0 chr6 33989080 33989103 -148426139 + (CA)n Simple_repeat Simple_repeat 1 23 0 190 396 77 35 chr6 33989841 33990217 -148425025 + L2 LINE L2 2572 2963 -351 21 0 0 0 chr6 33990234 33990255 -148424987 + AT_rich Low_complexity Low_complexity 1 21 0 242 366 20 13 chr6 33990367 33990520 -148424722 + L2 LINE L2 3159 3312 -1 21 36 0 0 chr6 33990595 33990623 -148424619 + AT_rich Low_complexity Low_complexity 1 28 0 229 273 0 0 chr6 33990773 33990828 -148424414 - MIR SINE MIR -129 133 79 390 273 0 0 chr6 33990829 33990906 -148424336 - AluJ/FLAM SINE Alu -220 82 6 381 93 0 0 chr6 33991028 33991082 -148424160 + (TG)n Simple_repeat Simple_repeat 1 54 0 2096 124 3 37 chr6 33991745 33992068 -148423174 + AluSx SINE Alu 1 312 0 6444 81 27 0 chr6 33992074 33993569 -148421673 + L1PA13 LINE L1 4630 6159 -4 359 269 57 51 chr6 33993848 33994023 -148421219 + MLT2E LTR ERVL 32 207 -421 2746 172 14 16 chr6 33994221 33994726 -148420516 - MLT1D LTR MaLR -1 504 1 2459 48 3 44 chr6 33994901 33995217 -148420025 - AluY SINE Alu -8 303 1 21 0 0 0 chr6 33995752 33995773 -148419469 + AT_rich Low_complexity Low_complexity 1 21 0 4624 191 21 22 chr6 33995951 33996680 -148418562 - L1MB7 LINE L1 -1 6183 5462 2454 150 114 46 chr6 33996680 33997199 -148418043 - LTR64 LTR ERVK -4 554 1 4624 191 21 22 chr6 33997199 33997622 -148417620 - L1MB7 LINE L1 -722 5462 5040 461 129 0 24 chr6 33997622 33997707 -148417535 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 1987 161 0 7 chr6 33997709 33998014 -148417228 - AluJb SINE Alu -9 303 1 369 194 19 2 chr6 33998014 33998113 -148417129 - L1MB7 LINE L1 -1096 5050 4943 * 688 224 50 14 chr6 33998109 33998328 -148416914 - L1MB7 LINE L1 -1780 4366 4140 225 365 9 17 chr6 34001339 34001454 -148413788 - MIR SINE MIR 0 262 149 2144 113 3 0 chr6 34001477 34001760 -148413482 + AluSq SINE Alu 1 284 -29 765 61 0 0 chr6 34001760 34001859 -148413383 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 406 275 8 17 chr6 34001892 34002012 -148413230 - MIR SINE MIR -133 129 11 219 158 18 35 chr6 34002670 34002727 -148412515 + T-rich Low_complexity Low_complexity 3 58 0 330 299 41 82 chr6 34002990 34003284 -148411958 - L1MEd LINE L1 -5350 769 488 433 316 51 52 chr6 34003680 34004305 -148410937 - MERVL LTR ERVL -1550 3935 3282 669 58 0 0 chr6 34004364 34004450 -148410792 + (CA)n Simple_repeat Simple_repeat 1 86 0 302 270 40 40 chr6 34005167 34005293 -148409949 + L1ME LINE L1 12 137 -5933 230 336 0 27 chr6 34005524 34005634 -148409608 + L1ME LINE L1 372 478 -5592 2187 170 44 32 chr6 34005862 34006120 -148409122 - MSTB LTR MaLR -2 424 157 2287 96 0 0 chr6 34006120 34006431 -148408811 + AluSg SINE Alu 1 311 0 2187 170 44 32 chr6 34006431 34006582 -148408660 - MSTB LTR MaLR -269 157 9 597 288 81 31 chr6 34006783 34007377 -148407865 + L1ME LINE L1 455 1078 -4900 2799 99 5 5 chr6 34007557 34007951 -148407291 - L1PA13 LINE L1 0 6163 5770 13258 182 9 24 chr6 34007951 34008691 -148406551 + L1PB2 LINE L1 2315 3064 -3087 2208 128 0 0 chr6 34008691 34008987 -148406255 + AluSx SINE Alu 3 298 -14 13258 182 9 24 chr6 34008987 34010776 -148404466 + L1PB2 LINE L1 3064 4763 -1388 2209 124 0 10 chr6 34010776 34011083 -148404159 + AluSq SINE Alu 1 304 -9 13258 182 9 24 chr6 34011083 34012452 -148402790 + L1PB2 LINE L1 4763 6151 0 201 39 0 0 chr6 34012466 34012492 -148402750 + (CAA)n Simple_repeat Simple_repeat 2 27 0 671 274 29 36 chr6 34012500 34012774 -148402468 + L1ME LINE L1 4353 4624 -1456 876 250 15 0 chr6 34012823 34013023 -148402219 - AluJo SINE Alu -92 220 18 1047 208 68 30 chr6 34013238 34013656 -148401586 - L1M3 LINE L1 -615 5565 5130 185 83 28 0 chr6 34013903 34013939 -148401303 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr6 34014504 34014525 -148400717 + AT_rich Low_complexity Low_complexity 1 21 0 805 219 0 12 chr6 34014840 34015000 -148400242 - MER90 LTR ERV1 0 575 418 1631 238 76 52 chr6 34015009 34015564 -148399678 - MER74A LTR ERVL -3 619 1 1209 258 164 0 chr6 34015584 34015937 -148399305 - MER90 LTR ERV1 -198 416 6 426 308 13 80 chr6 34016069 34016224 -148399018 + L1ME LINE L1 5389 5553 -502 2113 125 0 0 chr6 34016224 34016511 -148398731 - AluSx SINE Alu -25 287 1 426 308 13 80 chr6 34016511 34016601 -148398641 + L1ME LINE L1 5553 5611 -444 2293 104 0 3 chr6 34016601 34016900 -148398342 + AluSg SINE Alu 1 298 -12 426 308 13 80 chr6 34016900 34016965 -148398277 + L1ME LINE L1 5611 5679 -376 310 330 98 8 chr6 34017580 34017977 -148397265 + HAL1 LINE L1 983 1415 -1092 330 107 0 0 chr6 34019793 34019849 -148395393 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 256 173 53 27 chr6 34019854 34019929 -148395313 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 209 195 0 0 chr6 34021393 34021434 -148393808 + (TG)n Simple_repeat Simple_repeat 2 42 0 3304 141 30 21 chr6 34022019 34022857 -148392385 - L1M1 LINE L1 -673 5630 4791 820 148 0 0 chr6 34022858 34022980 -148392262 - FLAM_C SINE Alu -21 122 1 207 100 0 0 chr6 34023180 34023210 -148392032 + (T)n Simple_repeat Simple_repeat 1 30 0 6733 125 39 7 chr6 34023304 34024401 -148390841 - Tigger3b DNA MER2_type -1 1230 99 289 268 55 28 chr6 34024787 34024941 -148390301 + L1MEc LINE L1 1371 1481 -4942 399 300 56 12 chr6 34025024 34025274 -148389968 + L1M4 LINE L1 3310 3570 -2576 1569 185 14 76 chr6 34025289 34025656 -148389586 + MER2 DNA MER2_type 2 345 0 1716 86 0 9 chr6 34025681 34025891 -148389351 + AluSq SINE Alu 1 208 -105 1427 204 14 84 chr6 34025998 34026355 -148388887 + MER41C-int LTR ERV1 2341 2672 -1519 854 129 15 0 chr6 34026355 34026487 -148388755 + MSTA LTR MaLR 1 134 -294 382 281 0 0 chr6 34026586 34026668 -148388574 + FLAM_A SINE Alu 16 97 -36 4799 212 56 35 chr6 34026710 34027032 -148388210 + MER41C-int LTR ERV1 2727 3041 -1150 4711 161 14 4 chr6 34027032 34027807 -148387435 - LTR39 LTR ERV1 0 783 1 4799 212 56 35 chr6 34027807 34028705 -148386537 + MER41C-int LTR ERV1 3041 3972 -219 237 241 36 48 chr6 34028732 34028815 -148386427 + MER21B LTR ERV1 384 465 -398 754 212 109 73 chr6 34028816 34029154 -148386088 + MSTD LTR MaLR 1 348 -17 2054 130 0 60 chr6 34029165 34029518 -148385724 + MER1B DNA MER1_type 1 332 -7 1514 180 48 73 chr6 34029573 34030085 -148385157 + MER4A LTR ERV1 1 521 -76 929 147 0 0 chr6 34030090 34030285 -148384957 + HERVK14 LTR ERVK 5235 5579 -366 * 1417 151 0 9 chr6 34030283 34030315 -148384927 + MER41C-int LTR ERV1 7541 7756 0 1490 70 0 5 chr6 34030315 34030501 -148384741 + HERVK14 LTR ERVK 5575 5759 -186 357 186 0 18 chr6 34030501 34030576 -148384666 + MER41C LTR ERV1 1 61 -493 401 60 0 0 chr6 34030576 34030626 -148384616 + HERVK14 LTR ERVK 5835 5884 -61 1269 139 25 10 chr6 34030651 34030852 -148384390 + LTR3b LTR ERVK 158 361 -139 9376 105 2 0 chr6 34030873 34032110 -148383132 + THE1A-int LTR MaLR 342 1580 0 2140 147 14 8 chr6 34032110 34032463 -148382779 + THE1A LTR MaLR 1 355 0 1810 268 76 13 chr6 34032464 34033075 -148382167 - L1MDa LINE L1 -2499 4041 3371 2950 144 28 18 chr6 34033075 34033575 -148381667 - LTR10B LTR ERV1 0 505 1 1810 268 76 13 chr6 34033575 34033723 -148381519 - L1MDa LINE L1 -3169 3371 3234 1744 222 17 0 chr6 34033733 34034085 -148381157 - MLT1A1 LTR MaLR -1 364 7 1519 267 68 21 chr6 34034095 34034663 -148380579 - L1MDa LINE L1 -3313 3227 2615 3078 111 4 38 chr6 34034663 34035072 -148380170 + L1PA13 LINE L1 5684 6075 -88 6508 112 20 13 chr6 34035072 34036019 -148379223 + LTR13 LTR ERVK 1 954 0 3078 111 4 38 chr6 34036019 34036106 -148379136 + L1PA13 LINE L1 6075 6163 0 1519 267 68 21 chr6 34036106 34036283 -148378959 - L1MDa LINE L1 -3925 2615 2448 5429 221 47 16 chr6 34036288 34037857 -148377385 + L1MEc LINE L1 1515 4283 -1932 308 189 0 0 chr6 34037870 34037923 -148377319 - L1M1 LINE L1 -6265 1300 1248 2276 137 8 32 chr6 34037965 34038338 -148376904 - THE1B LTR MaLR 0 364 1 246 238 16 0 chr6 34043118 34043181 -148372061 + MIR SINE MIR 102 165 -97 568 87 33 0 chr6 34044065 34044157 -148371085 + L1PB1 LINE L1 6056 6150 -1 2286 107 0 0 chr6 34044174 34044473 -148370769 + AluSg SINE Alu 1 299 -11 1030 266 51 34 chr6 34044477 34044985 -148370257 - L1M4 LINE L1 -2045 4101 3585 1645 168 19 74 chr6 34044986 34045350 -148369892 - MER2 DNA MER2_type -1 344 1 337 314 25 29 chr6 34045361 34045603 -148369639 - L1M4 LINE L1 -2578 3568 3328 2960 40 0 0 chr6 34045793 34046145 -148369097 - L1PA4 LINE L1 -5 6150 5799 409 21 0 0 chr6 34046145 34046192 -148369050 + L1PA4 LINE L1 5757 5803 -351 266 0 29 0 chr6 34046383 34046417 -148368825 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 7728 27 6 0 chr6 34046418 34047687 -148367555 - L1PA3 LINE L1 -11 6144 4873 194 62 31 0 chr6 34048402 34048434 -148366808 + (CA)n Simple_repeat Simple_repeat 2 34 0 3561 155 80 1 chr6 34048447 34049124 -148366118 + Tigger3b DNA MER2_type 1 730 -501 8502 165 16 1 chr6 34049124 34050611 -148364631 + L1PA11 LINE L1 2605 4112 -2034 6722 133 28 0 chr6 34050637 34051017 -148364225 + L1PA11 LINE L1 4262 4630 -1544 2311 103 0 3 chr6 34051017 34051309 -148363933 - AluSg SINE Alu -19 291 1 6722 133 28 0 chr6 34051309 34052837 -148362405 + L1PA11 LINE L1 4630 6173 -1 1569 86 37 29 chr6 34052839 34053084 -148362158 + Tigger3b DNA MER2_type 724 970 -262 2553 186 31 99 chr6 34053108 34053786 -148361456 - MER21B LTR ERV1 -14 849 218 894 239 15 15 chr6 34053789 34054049 -148361193 + L1 LINE L1 4214 4473 -1673 * 28823 55 2 1 chr6 34054048 34060198 -148355044 + L1PA6 LINE L1 2 6154 0 203 133 44 0 chr6 34060217 34060262 -148354980 + (TA)n Simple_repeat Simple_repeat 1 47 0 7016 168 33 10 chr6 34060264 34061637 -148353605 + L1 LINE L1 2908 4311 -1835 953 177 0 51 chr6 34061637 34061654 -148353588 + AluJb SINE Alu 125 141 -171 1207 211 70 35 chr6 34061654 34061938 -148353304 + AluJo SINE Alu 1 294 -18 953 177 0 51 chr6 34061938 34062095 -148353147 + AluJb SINE Alu 141 290 -22 381 22 0 0 chr6 34063731 34063777 -148351465 + (TC)n Simple_repeat Simple_repeat 1 46 0 503 257 202 36 chr6 34063785 34064205 -148351037 + L2 LINE L2 1218 1707 -1607 666 191 24 0 chr6 34064358 34064370 -148350872 - FLAM_C SINE Alu -182 130 120 210 37 0 0 chr6 34064370 34064397 -148350845 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 666 191 24 0 chr6 34064397 34064510 -148350732 - FLAM_C SINE Alu -192 120 2 325 304 43 19 chr6 34065305 34065466 -148349776 - L1MC/D LINE L1 -2029 5779 5615 1604 140 92 15 chr6 34065516 34065787 -148349455 - AluJb SINE Alu -20 292 1 1300 252 34 13 chr6 34066058 34066599 -148348643 + MER90 LTR ERV1 1 559 -16 534 167 74 0 chr6 34067435 34067543 -148347699 + Charlie1 DNA MER1_type 2164 2279 -482 1341 180 4 4 chr6 34067543 34067787 -148347455 - L1 LINE L1 -2011 4135 3892 375 78 0 0 chr6 34067790 34067841 -148347401 + (GA)n Simple_repeat Simple_repeat 2 52 0 196 222 19 0 chr6 34068219 34068273 -148346969 - MIR SINE MIR -72 136 82 225 0 0 0 chr6 34068564 34068589 -148346653 + (A)n Simple_repeat Simple_repeat 1 25 0 380 231 37 15 chr6 34068600 34068734 -148346508 + L1ME3A LINE L1 5265 5401 -958 728 43 0 0 chr6 34068734 34068828 -148346414 + AluY SINE Alu 212 305 -6 1290 143 103 53 chr6 34068830 34069131 -148346111 + L1ME3A LINE L1 5392 5707 -652 198 0 0 0 chr6 34069149 34069171 -148346071 + (A)n Simple_repeat Simple_repeat 1 22 0 268 235 139 42 chr6 34069409 34069575 -148345667 + L1ME3A LINE L1 5988 6169 -1 261 160 0 40 chr6 34070336 34070386 -148344856 - MLT2B1 LTR ERVL 0 520 473 740 236 16 16 chr6 34070386 34070568 -148344674 - MLT2D LTR ERVL -232 182 1 568 188 116 0 chr6 34071421 34071533 -148343709 + FLAM_C SINE Alu 3 127 -16 180 295 26 0 chr6 34072121 34072199 -148343043 - MIR3 SINE MIR -43 165 86 495 312 59 21 chr6 34072629 34073004 -148342238 + HAL1 LINE L1 1841 2229 -278 2260 212 35 17 chr6 34077963 34078486 -148336756 - L1MC3 LINE L1 -1 7784 7249 1115 244 123 51 chr6 34078486 34078957 -148336285 - MLT1D LTR MaLR 0 505 1 2260 212 35 17 chr6 34078957 34078976 -148336266 - L1MC3 LINE L1 -536 7249 7232 287 222 19 130 chr6 34079447 34079609 -148335633 + HUERS-P3 LTR ERV1 633 776 -4095 756 158 0 25 chr6 34079622 34079742 -148335500 + AluJo/FLAM SINE Alu 10 126 -186 1961 142 3 16 chr6 34079745 34080062 -148335180 + AluSp SINE Alu 1 313 0 2291 96 3 6 chr6 34080189 34080501 -148334741 + AluY SINE Alu 1 311 0 1798 91 4 21 chr6 34080715 34080957 -148334285 - AluSx SINE Alu -11 301 64 2609 124 36 14 chr6 34081027 34081446 -148333796 - MSTA LTR MaLR 0 428 1 398 334 52 36 chr6 34081569 34082045 -148333197 + HUERS-P3 LTR ERV1 2546 2708 -4093 3620 165 20 28 chr6 34082250 34082382 -148332860 + L1M1 LINE L1 3076 3208 -4357 1464 216 0 10 chr6 34082382 34082673 -148332569 + AluJb SINE Alu 1 288 -24 3620 165 20 28 chr6 34082673 34083819 -148331423 + L1M1 LINE L1 3208 4350 -3215 1421 199 42 42 chr6 34083822 34084153 -148331089 + L1PB1 LINE L1 13 343 -7222 215 77 0 26 chr6 34085110 34085149 -148330093 + (CAA)n Simple_repeat Simple_repeat 2 39 0 494 301 102 39 chr6 34085209 34085780 -148329462 + HAL1 LINE L1 1841 2447 -60 902 120 0 51 chr6 34090629 34090787 -148324455 - AluSg/x SINE Alu -42 270 121 216 0 0 0 chr6 34090787 34090811 -148324431 + (T)n Simple_repeat Simple_repeat 1 24 0 530 148 0 0 chr6 34090811 34090899 -148324343 - AluJb SINE Alu -179 133 46 244 104 0 0 chr6 34092100 34092148 -148323094 - LTR66 LTR ERVL -169 441 394 1044 159 0 0 chr6 34092154 34092386 -148322856 + (TA)n Simple_repeat Simple_repeat 2 233 0 2582 27 0 7 chr6 34095082 34095394 -148319848 - AluYa5 SINE Alu 0 311 1 15151 197 13 21 chr6 34095394 34095982 -148319260 + L1PB1 LINE L1 2652 3243 -4327 2362 97 7 0 chr6 34095982 34096281 -148318961 - AluY SINE Alu -9 302 2 15151 197 13 21 chr6 34096281 34097328 -148317914 + L1PB1 LINE L1 3243 4296 -3274 2028 139 0 17 chr6 34097328 34097629 -148317613 + AluSx SINE Alu 7 302 -10 15151 197 13 21 chr6 34097629 34098211 -148317031 + L1PB1 LINE L1 4296 4881 -2689 7884 48 3 11 chr6 34098211 34099763 -148315479 + SVA Other Other 1 1383 -3 15151 197 13 21 chr6 34099763 34099783 -148315459 + L1PB1 LINE L1 4881 4900 -2670 2326 94 0 25 chr6 34099783 34100103 -148315139 + AluSp SINE Alu 1 312 -1 15151 197 13 21 chr6 34100103 34100336 -148314906 + L1PB1 LINE L1 4900 5133 -2437 2387 84 3 0 chr6 34100336 34100632 -148314610 + AluSp SINE Alu 1 297 -16 15151 197 13 21 chr6 34100632 34100852 -148314390 + L1PB1 LINE L1 5133 5353 -2217 2183 85 31 7 chr6 34100852 34101146 -148314096 + AluY SINE Alu 1 301 -10 15151 197 13 21 chr6 34101146 34103337 -148311905 + L1PB1 LINE L1 5353 7570 0 1371 189 94 103 chr6 34103368 34103922 -148311320 + L1M4 LINE L1 4477 5025 -1121 845 158 43 0 chr6 34103974 34104158 -148311084 - Charlie5 DNA MER1_type -49 2563 2372 506 335 71 18 chr6 34104571 34104908 -148310334 + L2 LINE L2 2959 3313 0 2073 222 42 10 chr6 34106352 34106857 -148308385 - L1MC3 LINE L1 -16 7769 7249 855 187 143 118 chr6 34106876 34107240 -148308002 - MLT1D LTR MaLR -17 373 1 237 272 64 48 chr6 34107566 34107772 -148307470 - MER54B LTR ERVL -541 252 67 266 121 30 121 chr6 34107823 34107889 -148307353 + MER65-int LTR ERV1 713 772 -4099 754 130 0 82 chr6 34107906 34108052 -148307190 + FLAM_C SINE Alu 10 143 0 2377 74 3 0 chr6 34108495 34108805 -148306437 + AluY SINE Alu 1 311 0 3112 106 19 6 chr6 34108812 34108923 -148306319 + L1PB1 LINE L1 5674 5782 -369 306 107 0 0 chr6 34108923 34108979 -148306263 + (TA)n Simple_repeat Simple_repeat 1 56 0 3112 106 19 6 chr6 34108979 34109337 -148305905 + L1PB1 LINE L1 5782 6149 -2 23 0 0 0 chr6 34109339 34109362 -148305880 + AT_rich Low_complexity Low_complexity 1 23 0 365 186 12 12 chr6 34109395 34109481 -148305761 + Charlie1 DNA MER1_type 2264 2349 -412 953 145 0 0 chr6 34109484 34109636 -148305606 + FRAM SINE Alu 2 153 -23 266 221 66 49 chr6 34110664 34110786 -148304456 + Charlie1 DNA MER1_type 2285 2408 -353 1853 126 32 0 chr6 34110797 34111082 -148304160 + L1PA16 LINE L1 5849 6142 -24 1695 87 12 8 chr6 34111082 34111324 -148303918 - AluSp SINE Alu -1 312 70 274 30 0 0 chr6 34111324 34111357 -148303885 - AluSp SINE Alu -268 33 1 22 35 0 0 chr6 34111369 34111398 -148303844 + AT_rich Low_complexity Low_complexity 1 29 0 291 342 59 21 chr6 34111729 34111966 -148303276 - MER41B LTR ERV1 -209 426 181 2066 109 10 16 chr6 34112009 34112321 -148302921 - AluSg SINE Alu 0 310 1 523 132 44 172 chr6 34112327 34112386 -148302856 + Charlie1 DNA MER1_type 2524 2589 -172 1760 79 0 0 chr6 34112386 34112613 -148302629 + AluSc SINE Alu 67 293 -16 523 132 44 172 chr6 34112613 34112767 -148302475 + Charlie1 DNA MER1_type 2589 2697 -64 1983 82 4 4 chr6 34112767 34113035 -148302207 - AluSp SINE Alu -45 268 1 523 132 44 172 chr6 34113035 34113093 -148302149 + Charlie1 DNA MER1_type 2697 2761 0 21 0 0 0 chr6 34113404 34113425 -148301817 + GC_rich Low_complexity Low_complexity 1 21 0 2107 91 0 24 chr6 34115567 34115863 -148299379 - AluSg SINE Alu -21 289 1 2006 112 0 13 chr6 34116774 34117087 -148298155 + AluY SINE Alu 1 309 -2 1325 107 141 0 chr6 34117276 34117482 -148297760 + MSTC LTR MaLR 1 235 -193 1041 240 20 20 chr6 34117482 34117837 -148297405 + MSTD-int LTR MaLR 1010 1325 -326 228 303 45 0 chr6 34118190 34118279 -148296963 + MIR SINE MIR 43 135 -73 614 228 29 7 chr6 34118335 34118471 -148296771 + MSTD LTR MaLR 1 139 -257 724 244 70 0 chr6 34118501 34118673 -148296569 + MSTD LTR MaLR 206 389 -7 2168 106 3 0 chr6 34118789 34119082 -148296160 - AluSq SINE Alu -12 301 8 239 323 110 16 chr6 34119333 34119460 -148295782 - L2 LINE L2 -9 3304 3166 3240 98 121 0 chr6 34119540 34120010 -148295232 - MER1A DNA MER1_type 0 527 1 2145 95 3 7 chr6 34120889 34121305 -148293937 + AluSp SINE Alu 3 417 0 8432 78 17 5 chr6 34121918 34123096 -148292146 - SVA Other Other 0 1386 195 196 279 32 110 chr6 34123157 34123197 -148292045 + MIR SINE MIR 65 107 -155 2339 83 3 3 chr6 34123197 34123510 -148291732 - AluSp SINE Alu 0 313 1 196 279 32 110 chr6 34123510 34123623 -148291619 + MIR SINE MIR 107 206 -56 2112 116 0 0 chr6 34123735 34124038 -148291204 - AluY SINE Alu -8 303 1 24 0 0 0 chr6 34125179 34125203 -148290039 + AT_rich Low_complexity Low_complexity 1 24 0 2307 93 7 0 chr6 34125554 34125864 -148289378 - AluSx SINE Alu 0 312 1 2407 48 10 0 chr6 34125870 34126165 -148289077 - AluY SINE Alu -13 298 1 21 57 0 0 chr6 34126327 34126362 -148288880 + AT_rich Low_complexity Low_complexity 1 35 0 2200 100 0 3 chr6 34126973 34127272 -148287970 - AluSc SINE Alu -11 298 1 2415 61 0 0 chr6 34127511 34127804 -148287438 + AluY SINE Alu 1 293 -18 2109 122 3 0 chr6 34128289 34128592 -148286650 - AluSp SINE Alu -9 304 1 971 119 0 0 chr6 34128809 34128943 -148286299 + AluSx SINE Alu 1 134 -178 2236 98 3 3 chr6 34128944 34129249 -148285993 + AluSq SINE Alu 1 305 -8 1067 141 0 0 chr6 34129309 34129465 -148285777 + AluSx SINE Alu 119 274 -36 201 74 0 0 chr6 34129475 34129502 -148285740 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1173 130 0 22 chr6 34130094 34130254 -148284988 - AluSg/x SINE Alu -19 291 134 2089 103 9 28 chr6 34130254 34130456 -148284786 - AluSp SINE Alu 0 313 118 2132 94 0 38 chr6 34130456 34130774 -148284468 - AluSx SINE Alu -6 306 1 2089 103 9 28 chr6 34130774 34130890 -148284352 - AluSp SINE Alu -195 118 1 1173 130 0 22 chr6 34130890 34130913 -148284329 - AluSg/x SINE Alu -176 134 112 451 111 0 100 chr6 34130915 34130992 -148284250 + AluJ/FRAM SINE Alu 227 295 -17 2118 122 3 0 chr6 34130992 34131303 -148283939 + AluSx SINE Alu 1 312 0 451 111 0 100 chr6 34131303 34131315 -148283927 + AluJ/FRAM SINE Alu 295 307 -5 191 276 10 0 chr6 34131464 34131562 -148283680 + (TG)n Simple_repeat Simple_repeat 1 99 0 1610 270 111 15 chr6 34132133 34132674 -148282568 + MLT1E LTR MaLR 1 593 0 1835 138 16 13 chr6 34133405 34133580 -148281662 - AluSx SINE Alu -6 306 128 255 31 0 0 chr6 34133580 34133612 -148281630 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1835 138 16 13 chr6 34133612 34133740 -148281502 - AluSx SINE Alu -184 128 2 270 160 128 43 chr6 34134151 34134245 -148280997 + L1MC5 LINE L1 7834 7935 -26 856 155 0 0 chr6 34134264 34134393 -148280849 + FLAM_C SINE Alu 1 129 -4 1108 218 123 3 chr6 34134420 34134705 -148280537 + L1MD3 LINE L1 6783 7101 -894 579 291 69 52 chr6 34134731 34135150 -148280092 + L1M4 LINE L1 810 1235 -5620 920 83 0 0 chr6 34135178 34135298 -148279944 + AluSp/q SINE Alu 175 294 -19 291 225 0 79 chr6 34135316 34135405 -148279837 + L1M4 LINE L1 1205 1286 -5573 * 684 277 39 9 chr6 34135402 34135633 -148279609 + L1M4 LINE L1 1216 1453 -5406 1968 135 7 0 chr6 34135633 34135930 -148279312 + AluSx SINE Alu 1 299 -13 455 245 27 161 chr6 34135932 34136110 -148279132 + L1M4 LINE L1 1985 2185 -4774 2242 95 3 0 chr6 34136110 34136404 -148278838 + AluSg SINE Alu 1 295 -15 455 245 27 161 chr6 34136404 34136515 -148278727 + L1M4 LINE L1 2185 2198 -4761 1659 159 0 53 chr6 34136515 34136835 -148278407 + AluJo SINE Alu 10 312 0 455 245 27 161 chr6 34136835 34136985 -148278257 + L1M4 LINE L1 2198 2366 -4593 979 157 0 0 chr6 34137018 34137171 -148278071 + AluSg/x SINE Alu 133 285 -25 909 180 6 17 chr6 34137278 34137456 -148277786 - FRAM SINE Alu -7 169 1 1645 147 0 0 chr6 34137750 34138009 -148277233 + AluSx SINE Alu 1 259 -53 634 101 10 20 chr6 34138060 34138159 -148277083 + MER4A LTR ERV1 1 98 -566 1876 109 8 78 chr6 34138160 34138234 -148277008 + MER4A LTR ERV1 264 342 -322 2172 98 0 13 chr6 34138234 34138541 -148276701 + AluSx SINE Alu 1 303 -9 1876 109 8 78 chr6 34138541 34138834 -148276408 + MER4A LTR ERV1 342 664 0 413 19 19 0 chr6 34139428 34139482 -148275760 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 2277 65 7 10 chr6 34139482 34139788 -148275454 - AluSp SINE Alu -8 305 1 1611 133 6 91 chr6 34140503 34140833 -148274409 - AluSx SINE Alu -10 302 1 189 0 0 0 chr6 34140833 34140854 -148274388 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1963 115 4 4 chr6 34140856 34141134 -148274108 - AluSx SINE Alu -32 280 3 2122 121 7 0 chr6 34141164 34141471 -148273771 - AluSq SINE Alu -4 309 1 324 167 23 0 chr6 34141481 34141552 -148273690 - AluJb SINE Alu -2 300 240 789 223 4 51 chr6 34141560 34141833 -148273409 + pTR5 LTR ERV1 769 1028 -1410 4612 78 11 211 chr6 34141915 34142948 -148272294 + LTR12 LTR ERV1 1 826 0 1478 146 8 4 chr6 34142948 34143188 -148272054 - AluJb SINE Alu -71 241 1 2072 121 3 0 chr6 34143483 34143781 -148271461 - AluSq SINE Alu -14 299 1 36304 89 20 24 chr6 34144569 34148158 -148267084 + L1PA6 LINE L1 22 3654 -2500 249 211 13 53 chr6 34148158 34148234 -148267008 - MSTB2 LTR MaLR -249 208 136 36304 89 20 24 chr6 34148234 34150724 -148264518 + L1PA6 LINE L1 3654 6152 -2 786 219 62 80 chr6 34150743 34150873 -148264369 - Charlie7 DNA MER1_type -81 2531 2400 2366 77 0 3 chr6 34150873 34151184 -148264058 + AluSg SINE Alu 1 310 0 786 219 62 80 chr6 34151184 34151391 -148263851 - Charlie7 DNA MER1_type -212 2400 2203 2155 77 44 7 chr6 34151391 34151689 -148263553 + AluY SINE Alu 3 311 0 786 219 62 80 chr6 34151689 34151835 -148263407 - Charlie7 DNA MER1_type -409 2203 2056 187 324 56 0 chr6 34152160 34152231 -148263011 + MIR SINE MIR 113 187 -75 2589 48 0 0 chr6 34152234 34152545 -148262697 + AluY SINE Alu 1 311 0 742 156 39 0 chr6 34152569 34152697 -148262545 + FLAM_C SINE Alu 11 143 0 2149 97 3 3 chr6 34153117 34153426 -148261816 + AluSq SINE Alu 1 309 -4 2155 131 67 6 chr6 34153690 34154048 -148261194 + LTR8A LTR ERV1 2 381 -346 1008 162 28 0 chr6 34154051 34154230 -148261012 - AluJo SINE Alu -10 302 119 821 150 0 0 chr6 34154265 34154398 -148260844 - AluJo SINE Alu -179 133 1 1217 177 71 77 chr6 34154398 34154568 -148260674 + LTR8A LTR ERV1 379 548 -179 1442 175 102 0 chr6 34154568 34154842 -148260400 - AluJo SINE Alu -10 302 1 1217 177 71 77 chr6 34154842 34155022 -148260220 + LTR8A LTR ERV1 548 727 0 2242 92 0 0 chr6 34155208 34155502 -148259740 - AluSx SINE Alu -18 294 1 302 258 82 0 chr6 34155523 34155620 -148259622 + L1ME4a LINE L1 5533 5637 -484 788 177 17 57 chr6 34155627 34155802 -148259440 - MLT1A1 LTR MaLR 0 365 198 1806 133 9 22 chr6 34155804 34156199 -148259043 - AluJo SINE Alu 0 391 1 729 190 89 17 chr6 34156217 34156396 -148258846 - MLT1A1 LTR MaLR -182 192 1 1625 164 14 17 chr6 34156459 34156646 -148258596 - AluJb SINE Alu 0 312 136 2298 91 0 0 chr6 34156646 34156943 -148258299 - AluSg SINE Alu -13 297 1 1625 164 14 17 chr6 34156943 34157075 -148258167 - AluJb SINE Alu -176 136 5 368 236 101 104 chr6 34157149 34157414 -148257828 + L1ME4a LINE L1 5761 6026 -95 2017 111 0 35 chr6 34157414 34157730 -148257512 - AluSx SINE Alu -7 305 1 368 236 101 104 chr6 34157730 34157752 -148257490 + L1ME4a LINE L1 6026 6047 -74 1574 173 91 58 chr6 34157755 34157784 -148257458 - MLT2D LTR ERVL -4 410 383 231 36 0 0 chr6 34157784 34157812 -148257430 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1574 173 91 58 chr6 34157812 34158176 -148257066 - MLT2D LTR ERVL -31 383 4 206 230 0 11 chr6 34158258 34158345 -148256897 + (TA)n Simple_repeat Simple_repeat 1 86 0 1858 169 125 0 chr6 34158376 34158744 -148256498 + MLT2D LTR ERVL 1 414 0 276 303 92 32 chr6 34158903 34159088 -148256154 - L2 LINE L2 -252 3061 2866 1049 158 19 0 chr6 34159155 34159313 -148255929 - AluJb SINE Alu -15 297 137 2184 124 0 3 chr6 34159316 34159615 -148255627 - AluSx SINE Alu -14 298 1 863 245 108 99 chr6 34159619 34159919 -148255323 + L1MC4a LINE L1 6411 6707 -1101 2417 88 3 0 chr6 34159919 34160224 -148255018 + AluY SINE Alu 1 306 -5 863 245 108 99 chr6 34160224 34160237 -148255005 + L1MC4a LINE L1 6707 6718 -1090 2102 148 3 22 chr6 34160237 34160555 -148254687 + AluSx SINE Alu 1 312 0 863 245 108 99 chr6 34160555 34160714 -148254528 + L1MC4a LINE L1 6718 6888 -920 1764 103 0 0 chr6 34160726 34160950 -148254292 + AluSc SINE Alu 76 299 -10 233 240 27 0 chr6 34160950 34161025 -148254217 + L1MC4 LINE L1 6962 7038 -1004 1653 138 83 0 chr6 34161040 34161293 -148253949 + AluJb SINE Alu 24 297 -15 292 181 103 43 chr6 34161313 34161429 -148253813 + L1MC5 LINE L1 6940 7062 -899 644 96 0 0 chr6 34161447 34161530 -148253712 + AluS SINE Alu 2 84 -229 564 242 97 118 chr6 34161555 34162176 -148253066 + L1MC4 LINE L1 7098 7730 -312 319 123 0 0 chr6 34162176 34162233 -148253009 + L1MA8 LINE L1 6225 6281 -10 564 242 97 118 chr6 34162233 34162396 -148252846 + L1MC4 LINE L1 7730 7867 -175 2239 122 0 3 chr6 34162396 34162692 -148252550 - AluSx SINE Alu -17 295 1 564 242 97 118 chr6 34162692 34162719 -148252523 + L1MC4 LINE L1 7867 7893 -149 2057 124 0 0 chr6 34162731 34163005 -148252237 + AluSx SINE Alu 24 297 -15 3026 163 19 74 chr6 34163014 34163126 -148252116 + L1MA7 LINE L1 5510 5627 -670 2418 100 0 0 chr6 34163126 34163426 -148251816 + AluSq SINE Alu 1 300 -13 3026 163 19 74 chr6 34163426 34163603 -148251639 + L1MA7 LINE L1 5627 5812 -485 2453 87 0 3 chr6 34163603 34163915 -148251327 + AluY SINE Alu 1 311 0 3026 163 19 74 chr6 34163915 34164381 -148250861 + L1MA7 LINE L1 5812 6180 -117 2523 61 0 3 chr6 34164381 34164677 -148250565 + AluSq SINE Alu 1 295 -18 3026 163 19 74 chr6 34164677 34164780 -148250462 + L1MA7 LINE L1 6180 6287 -10 21 0 0 0 chr6 34164792 34164813 -148250429 + AT_rich Low_complexity Low_complexity 1 21 0 377 231 149 15 chr6 34164845 34164979 -148250263 + L1MC4 LINE L1 7891 8042 0 29 47 0 0 chr6 34165160 34165203 -148250039 + AT_rich Low_complexity Low_complexity 1 43 0 446 312 246 22 chr6 34165598 34166904 -148248338 + L2 LINE L2 1494 3085 -187 255 343 206 9 chr6 34167006 34167239 -148248003 + L2 LINE L2 2994 3272 0 275 297 0 0 chr6 34169264 34169328 -148245914 + L2 LINE L2 3242 3305 -8 336 172 0 91 chr6 34169903 34170002 -148245240 + CT-rich Low_complexity Low_complexity 2 91 0 340 309 127 34 chr6 34170157 34170184 -148245058 - MIR SINE MIR 0 262 239 213 39 0 0 chr6 34170184 34170210 -148245032 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 340 309 127 34 chr6 34170210 34170418 -148244824 - MIR SINE MIR -23 239 5 590 266 133 5 chr6 34171393 34171611 -148243631 + MIR SINE MIR 1 246 -16 2352 91 0 19 chr6 34171644 34171951 -148243291 + AluSq SINE Alu 1 301 -12 1139 273 96 13 chr6 34172036 34172486 -148242756 + L2 LINE L2 720 1206 -2108 286 205 171 26 chr6 34172536 34172653 -148242589 + L2 LINE L2 1705 1838 -1476 2083 141 3 3 chr6 34172749 34173054 -148242188 - AluSx SINE Alu -7 305 1 294 306 10 0 chr6 34173165 34173263 -148241979 - L1ME3A LINE L1 -208 5962 5864 2776 251 140 36 chr6 34173277 34173582 -148241660 + L2 LINE L2 1826 2098 -1215 2193 117 7 7 chr6 34173582 34173882 -148241360 - AluSx SINE Alu -12 300 1 2776 251 140 36 chr6 34173882 34174900 -148240342 + L2 LINE L2 2098 3313 0 246 264 104 9 chr6 34175436 34175542 -148239700 + MIR SINE MIR 145 260 -2 290 304 78 46 chr6 34175544 34175628 -148239614 - MIR SINE MIR 0 262 182 1874 163 14 10 chr6 34175628 34175922 -148239320 - AluJo SINE Alu -17 295 1 290 304 78 46 chr6 34175922 34176063 -148239179 - MIR SINE MIR -80 182 34 256 208 21 0 chr6 34176496 34176544 -148238698 - MER91 DNA MER1_type -73 67 19 374 357 7 0 chr6 34177656 34177810 -148237432 + (TATG)n Simple_repeat Simple_repeat 2 156 0 222 227 76 30 chr6 34177876 34177942 -148237300 - MIR SINE MIR -187 75 7 21 57 0 0 chr6 34180017 34180052 -148235190 + GC_rich Low_complexity Low_complexity 1 35 0 1296 264 123 37 chr6 34182075 34182300 -148232942 + L1MB2 LINE L1 4494 4698 -1466 851 163 0 15 chr6 34182300 34182435 -148232807 + FLAM_A SINE Alu 1 133 0 1296 264 123 37 chr6 34182435 34182852 -148232390 + L1MB2 LINE L1 4698 5225 -939 2409 85 7 3 chr6 34182852 34183157 -148232085 + AluSg SINE Alu 1 306 -4 1296 264 123 37 chr6 34183157 34183405 -148231837 + L1MB2 LINE L1 5225 5450 -714 2942 128 66 80 chr6 34183406 34183839 -148231403 + L1MB2 LINE L1 5515 5952 -219 2212 120 13 0 chr6 34183839 34184138 -148231104 + AluSx SINE Alu 1 303 -9 2942 128 66 80 chr6 34184138 34184259 -148230983 + L1MB2 LINE L1 5952 6061 -110 2437 88 0 0 chr6 34184259 34184555 -148230687 + AluSg SINE Alu 1 296 -14 2942 128 66 80 chr6 34184555 34184662 -148230580 + L1MB2 LINE L1 6061 6168 -3 770 179 0 0 chr6 34184675 34184787 -148230455 + FLAM_C SINE Alu 6 117 -26 2701 213 66 18 chr6 34184787 34185510 -148229732 + L1ME3A LINE L1 5409 6162 -8 180 0 0 0 chr6 34185567 34185587 -148229655 + (TC)n Simple_repeat Simple_repeat 1 20 0 180 125 0 0 chr6 34187407 34187439 -148227803 + (T)n Simple_repeat Simple_repeat 1 32 0 427 291 163 31 chr6 34188090 34188379 -148226863 - L2 LINE L2 -438 2876 2550 2504 73 0 6 chr6 34188481 34188794 -148226448 + AluY SINE Alu 1 311 0 228 122 143 0 chr6 34188806 34188855 -148226387 - MLT1J LTR MaLR -58 453 398 2648 55 0 3 chr6 34189045 34189353 -148225889 - AluY SINE Alu -4 307 1 892 216 226 5 chr6 34189460 34189846 -148225396 - MER90 LTR ERV1 -140 435 9 2123 120 0 13 chr6 34189950 34190249 -148224993 + AluSx SINE Alu 1 295 -17 289 296 22 59 chr6 34190293 34190428 -148224814 - L2 LINE L2 -1164 2150 2021 204 217 0 87 chr6 34190430 34190499 -148224743 - MIR SINE MIR -24 238 176 1730 63 5 5 chr6 34190525 34190731 -148224511 - AluSq SINE Alu -107 206 1 1072 269 106 44 chr6 34190739 34191137 -148224105 - L2 LINE L2 -3 3310 2938 1624 187 53 3 chr6 34191137 34191421 -148223821 + AluJo SINE Alu 1 298 -14 1072 269 106 44 chr6 34191421 34191568 -148223674 - L2 LINE L2 -375 2938 2802 2411 95 0 0 chr6 34191568 34191872 -148223370 - AluSg SINE Alu -6 304 1 1072 269 106 44 chr6 34191872 34192050 -148223192 - L2 LINE L2 -511 2802 2530 983 240 43 43 chr6 34192046 34192350 -148222892 + L2 LINE L2 2398 2701 -613 * 2449 87 0 6 chr6 34192376 34192687 -148222555 + AluSg SINE Alu 1 309 -1 816 167 0 15 chr6 34192687 34192819 -148222423 - AluJo/FLAM SINE Alu -182 130 1 2246 75 0 4 chr6 34192828 34193138 -148222104 - AluY SINE Alu 0 313 5 854 296 113 21 chr6 34193138 34193687 -148221555 + L2 LINE L2 2683 3313 0 1123 286 206 11 chr6 34193711 34194278 -148220964 - L2 LINE L2 -807 2507 1830 181 264 94 0 chr6 34194294 34194347 -148220895 - MIR SINE MIR -158 104 47 315 146 21 188 chr6 34194348 34194492 -148220750 + L1MA10 LINE L1 6215 6334 0 601 327 125 56 chr6 34196006 34196269 -148218973 - L2 LINE L2 -9 3263 3020 1759 170 11 0 chr6 34196269 34196546 -148218696 - AluJo SINE Alu -21 291 12 601 327 125 56 chr6 34196546 34197713 -148217529 - L2 LINE L2 -252 3020 1698 1399 154 75 72 chr6 34197887 34198193 -148217049 - AluJo SINE Alu -5 307 1 186 305 92 38 chr6 34198517 34198648 -148216594 - L2 LINE L2 -341 2973 2836 2340 99 7 0 chr6 34198820 34199124 -148216118 - AluSg SINE Alu -4 306 1 26 0 0 0 chr6 34199124 34199150 -148216092 + AT_rich Low_complexity Low_complexity 1 26 0 198 347 28 0 chr6 34199468 34199540 -148215702 + L2 LINE L2 2275 2348 -966 1830 182 7 19 chr6 34199544 34199851 -148215391 + AluJo SINE Alu 1 303 -9 210 318 57 66 chr6 34199893 34200033 -148215209 + L2 LINE L2 2341 2481 -833 2436 99 0 3 chr6 34200033 34200345 -148214897 - AluSx SINE Alu -1 311 1 210 318 57 66 chr6 34200345 34200528 -148214714 + L2 LINE L2 2481 2724 -590 602 310 175 28 chr6 34200567 34200989 -148214253 + L2 LINE L2 2830 3313 0 614 151 126 8 chr6 34201333 34201452 -148213790 + FLAM_C SINE Alu 1 133 0 219 69 0 0 chr6 34201641 34201670 -148213572 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2358 103 0 0 chr6 34202476 34202778 -148212464 + AluSg SINE Alu 1 302 -8 343 203 40 0 chr6 34203079 34203153 -148212089 + Tigger5 DNA MER2_type 1 77 -2246 336 203 0 0 chr6 34203153 34203212 -148212030 - Tigger5 DNA MER2_type -2 2321 2263 2558 77 0 0 chr6 34203212 34203512 -148211730 - AluSc SINE Alu -9 300 1 231 228 18 0 chr6 34203530 34203587 -148211655 + Tigger5 DNA MER2_type 2266 2323 0 2781 23 3 7 chr6 34203821 34204131 -148211111 + AluY SINE Alu 1 309 -2 1935 165 0 7 chr6 34204424 34204727 -148210515 - AluJb SINE Alu -6 306 6 808 232 79 21 chr6 34204728 34204918 -148210324 - MER58C DNA MER1_type -5 210 10 472 337 55 6 chr6 34204935 34205116 -148210126 + MIR3 SINE MIR 19 208 0 2352 109 0 0 chr6 34205155 34205457 -148209785 - AluY SINE Alu -7 304 3 2599 66 0 0 chr6 34205807 34206112 -148209130 - AluY SINE Alu -6 305 1 216 200 0 0 chr6 34206155 34206200 -148209042 + GA-rich Low_complexity Low_complexity 3 47 0 2044 151 3 0 chr6 34206451 34206749 -148208493 - AluJb SINE Alu -13 299 1 818 161 0 8 chr6 34208522 34208646 -148206596 + FLAM_C SINE Alu 1 123 -20 1224 191 5 0 chr6 34208664 34208868 -148206374 + AluJb SINE Alu 85 289 -23 1887 109 91 0 chr6 34210749 34211023 -148204219 + AluSx SINE Alu 1 299 -13 572 161 0 21 chr6 34211026 34211119 -148204123 + AluJ/FLAM SINE Alu 2 92 -220 2087 106 39 3 chr6 34211119 34211403 -148203839 + AluSp SINE Alu 1 294 -19 1522 139 9 0 chr6 34211404 34211619 -148203623 + AluSg/x SINE Alu 80 296 -14 2376 89 7 0 chr6 34211654 34211957 -148203285 - AluSg SINE Alu -5 305 1 279 221 188 19 chr6 34211957 34212111 -148203131 - L1ME4a LINE L1 -108 6013 5834 2291 90 7 0 chr6 34212126 34212414 -148202828 - AluY SINE Alu -20 291 2 255 242 33 0 chr6 34212436 34212527 -148202715 - L1ME4a LINE L1 -525 5596 5503 1835 150 24 24 chr6 34212769 34213062 -148202180 - AluSx SINE Alu -19 293 1 2067 47 0 0 chr6 34213140 34213376 -148201866 + AluY SINE Alu 63 298 -13 2180 149 7 0 chr6 34215299 34215607 -148199635 - AluSx SINE Alu -2 310 1 1566 163 63 53 chr6 34215607 34215906 -148199336 - AluJo SINE Alu -10 302 1 2176 100 21 7 chr6 34216779 34217070 -148198172 + AluSg SINE Alu 1 295 -15 548 191 63 24 chr6 34217127 34217253 -148197989 + MIR SINE MIR 85 215 -47 22 0 0 0 chr6 34217280 34217302 -148197940 + AT_rich Low_complexity Low_complexity 1 22 0 2266 111 3 0 chr6 34217302 34217600 -148197642 - AluSx SINE Alu -13 299 1 876 165 0 0 chr6 34217816 34217949 -148197293 - FLAM_C SINE Alu 0 133 1 1531 173 4 8 chr6 34218217 34218472 -148196770 - AluJo SINE Alu -16 296 43 271 274 157 57 chr6 34218483 34218802 -148196440 - L2 LINE L2 -285 2987 2630 2312 105 0 0 chr6 34218963 34219259 -148195983 + AluSp SINE Alu 1 296 -17 2125 89 43 0 chr6 34219676 34219958 -148195284 + AluSq SINE Alu 1 294 -19 2373 81 16 13 chr6 34219962 34220271 -148194971 - AluSq SINE Alu -3 310 1 2237 101 0 10 chr6 34220307 34220471 -148194771 - AluSc SINE Alu -14 295 134 2428 75 0 0 chr6 34220471 34220766 -148194476 - AluY SINE Alu -15 296 2 2237 101 0 10 chr6 34220766 34220899 -148194343 - AluSc SINE Alu -175 134 1 464 143 50 187 chr6 34221324 34221425 -148193817 + MER5A DNA MER1_type 31 144 -45 2285 123 0 19 chr6 34221425 34221743 -148193499 - AluSx SINE Alu 0 312 1 464 143 50 187 chr6 34221743 34221757 -148193485 + MER5A DNA MER1_type 144 158 -31 2472 87 6 0 chr6 34221757 34222068 -148193174 - AluSp SINE Alu 0 313 1 464 143 50 187 chr6 34222068 34222133 -148193109 + MER5A DNA MER1_type 158 187 -2 2110 96 53 0 chr6 34222218 34222500 -148192742 - AluSq SINE Alu -16 297 1 848 209 12 117 chr6 34222570 34222819 -148192423 - AluJo SINE Alu -89 223 1 1869 136 46 0 chr6 34222854 34223134 -148192108 - AluSx SINE Alu -19 293 1 1884 154 17 3 chr6 34223134 34223425 -148191817 - AluJo SINE Alu -7 305 10 196 233 82 55 chr6 34223436 34223509 -148191733 - MIR SINE MIR -160 102 28 2143 108 0 7 chr6 34223850 34224138 -148191104 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr6 34226244 34226264 -148188978 + (GGA)n Simple_repeat Simple_repeat 1 20 0 2575 67 0 0 chr6 34229336 34229636 -148185606 + AluY SINE Alu 1 300 -11 874 93 0 0 chr6 34230899 34231017 -148184225 + L1PB1 LINE L1 6017 6134 -17 2042 156 0 10 chr6 34231741 34232049 -148183193 - AluJb SINE Alu -7 305 1 2342 100 0 0 chr6 34232059 34232358 -148182884 - AluY SINE Alu -12 299 1 1800 154 25 44 chr6 34234784 34235102 -148180140 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 34237816 34237837 -148177405 + AT_rich Low_complexity Low_complexity 1 21 0 218 171 0 0 chr6 34238449 34238484 -148176758 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 34238987 34239007 -148176235 + (A)n Simple_repeat Simple_repeat 1 20 0 336 91 45 76 chr6 34242010 34242076 -148173166 - U6 snRNA snRNA -43 64 1 2412 94 0 0 chr6 34242675 34242973 -148172269 - AluSc SINE Alu -11 298 1 2472 71 0 0 chr6 34243793 34244120 -148171122 + AluY SINE Alu 1 311 0 2308 106 0 0 chr6 34244333 34244625 -148170617 - AluSg SINE Alu -18 292 1 2304 99 13 0 chr6 34244877 34245179 -148170063 + AluSq SINE Alu 1 306 -7 212 358 50 17 chr6 34245226 34245346 -148169896 + L3 LINE CR1 1432 1555 -22 2236 113 0 10 chr6 34245419 34245719 -148169523 + AluSx SINE Alu 1 297 -15 2320 104 0 7 chr6 34246040 34246348 -148168894 + AluSg1 SINE Alu 3 308 -1 1656 133 118 11 chr6 34246844 34247123 -148168119 + AluSg1 SINE Alu 1 309 0 767 228 0 0 chr6 34247348 34247497 -148167745 + MER58B DNA MER1_type 193 341 0 2118 114 52 0 chr6 34247528 34247817 -148167425 - AluSp SINE Alu -8 305 2 1979 125 0 28 chr6 34247865 34248153 -148167089 - AluSx SINE Alu -32 280 1 586 305 0 61 chr6 34248970 34249167 -148166075 - MER91A DNA MER1_type -11 185 1 2009 137 17 3 chr6 34249576 34249869 -148165373 + AluJb SINE Alu 1 297 -15 2203 131 0 0 chr6 34252363 34252660 -148162582 - AluSg SINE Alu -13 297 1 1920 153 10 0 chr6 34252660 34252954 -148162288 - AluJo SINE Alu -12 300 3 2108 140 0 3 chr6 34252996 34253296 -148161946 - AluSx SINE Alu -7 305 7 2460 62 7 0 chr6 34253313 34253601 -148161641 - AluY SINE Alu -21 290 1 464 194 146 149 chr6 34253803 34253877 -148161365 - L2 LINE L2 -3 3310 3237 1527 131 0 18 chr6 34253877 34254106 -148161136 + AluJb SINE Alu 86 310 -2 2278 112 0 3 chr6 34254116 34254412 -148160830 + AluSx SINE Alu 6 300 -12 2114 142 0 3 chr6 34254413 34254724 -148160518 + AluSx SINE Alu 1 310 -2 464 194 146 149 chr6 34254724 34254951 -148160291 - L2 LINE L2 -84 3229 2997 2359 54 40 14 chr6 34254959 34255256 -148159986 + AluY SINE Alu 1 305 -6 1207 104 11 22 chr6 34255256 34255430 -148159812 + AluSg/x SINE Alu 135 308 -4 940 180 0 12 chr6 34255437 34255598 -148159644 + FRAM SINE Alu 10 168 -8 323 164 0 15 chr6 34256970 34257037 -148158205 + GA-rich Low_complexity Low_complexity 5 70 0 1773 166 19 35 chr6 34257184 34257498 -148157744 + AluJb SINE Alu 4 312 0 264 136 91 0 chr6 34257542 34257617 -148157625 + Alu SINE Alu 235 313 0 1513 165 81 4 chr6 34257665 34257926 -148157316 - AluJo SINE Alu -31 281 1 441 51 0 0 chr6 34257927 34257986 -148157256 - L1MA7 LINE L1 -461 5830 5772 3085 132 27 0 chr6 34257986 34258503 -148156739 - L1MA4 LINE L1 -1 6299 5769 986 198 18 0 chr6 34258503 34258670 -148156572 - AluSg/x SINE Alu -24 286 117 2256 125 0 0 chr6 34258695 34258998 -148156244 - AluSx SINE Alu -9 303 1 2319 115 3 0 chr6 34259002 34259306 -148155936 - AluSp SINE Alu -8 305 1 553 105 29 0 chr6 34259311 34259420 -148155822 - L1ME LINE L1 -381 5781 5669 635 237 8 0 chr6 34259456 34259587 -148155655 - AluJo SINE Alu -103 209 78 309 250 16 0 chr6 34259587 34259651 -148155591 + MER2 DNA MER2_type 281 345 0 1753 140 23 8 chr6 34259702 34259966 -148155276 + AluSx SINE Alu 1 268 -44 217 352 56 24 chr6 34262016 34262141 -148153101 + L2 LINE L2 3144 3272 0 736 142 8 0 chr6 34262975 34263102 -148152140 - L1MB3 LINE L1 -1 6182 6055 1855 179 3 16 chr6 34263113 34263425 -148151817 - AluJo SINE Alu -4 308 1 2036 136 0 7 chr6 34263950 34264244 -148150998 - AluSx SINE Alu -16 296 5 560 233 31 25 chr6 34264331 34264490 -148150752 - MIR SINE MIR 0 262 103 225 305 183 0 chr6 34264556 34264720 -148150522 + L2 LINE L2 2719 2912 -402 2210 89 41 0 chr6 34264829 34265121 -148150121 - AluSx SINE Alu -8 304 1 193 337 67 11 chr6 34265334 34265423 -148149819 - L2 LINE L2 -17 3296 3203 2467 81 0 31 chr6 34266598 34266921 -148148321 - AluSp SINE Alu 0 313 1 2433 68 3 0 chr6 34266928 34267221 -148148021 - AluSp SINE Alu -19 294 1 242 314 23 12 chr6 34267333 34267419 -148147823 - MIR SINE MIR -66 142 56 1118 61 0 0 chr6 34267573 34267704 -148147538 + AluY SINE Alu 2 132 -179 189 323 115 15 chr6 34267792 34267922 -148147320 + L2 LINE L2 3171 3313 0 33 43 0 0 chr6 34270017 34270064 -148145178 + GC_rich Low_complexity Low_complexity 1 47 0 1319 145 7 86 chr6 34270494 34270763 -148144479 + AluJo SINE Alu 40 287 -25 2465 78 3 0 chr6 34270771 34271079 -148144163 + AluSc SINE Alu 1 309 0 376 198 0 55 chr6 34273097 34273188 -148142054 + L2 LINE L2 3225 3310 -3 917 142 231 4 chr6 34274145 34274370 -148140872 - MER2 DNA MER2_type -36 309 34 409 207 49 0 chr6 34274461 34274543 -148140699 - FAM SINE Alu -78 97 12 279 216 68 45 chr6 34274658 34274746 -148140496 + MER5A DNA MER1_type 18 107 -82 1218 136 39 152 chr6 34274864 34275160 -148140082 + AluJb SINE Alu 3 260 -52 2121 121 13 10 chr6 34275160 34275465 -148139777 - AluSx SINE Alu -6 306 1 1218 136 39 152 chr6 34275465 34275498 -148139744 + AluJb SINE Alu 260 295 -17 952 209 0 0 chr6 34275836 34275994 -148139248 - FRAM SINE Alu -16 160 3 2161 125 7 13 chr6 34276007 34276311 -148138931 - AluSx SINE Alu -10 302 1 2282 125 3 0 chr6 34277072 34277376 -148137866 - AluSx SINE Alu -7 305 1 2371 88 10 0 chr6 34277386 34277683 -148137559 - AluY SINE Alu -9 302 3 2274 113 0 13 chr6 34277685 34277986 -148137256 - AluSx SINE Alu -15 297 1 720 252 67 21 chr6 34277996 34278234 -148137008 - MIR SINE MIR -10 252 4 214 317 48 0 chr6 34278433 34278537 -148136705 + MIR SINE MIR 151 259 -3 2339 99 3 3 chr6 34279810 34280114 -148135128 + AluSx SINE Alu 1 304 -8 2162 121 13 10 chr6 34280578 34280876 -148134366 - AluSx SINE Alu -13 299 1 1827 161 24 3 chr6 34280967 34281259 -148133983 - AluJb SINE Alu -14 298 1 1027 279 73 31 chr6 34281489 34281640 -148133602 - HAL1 LINE L1 -716 1791 1648 2177 142 0 0 chr6 34281640 34281943 -148133299 - AluSq SINE Alu -10 303 1 1027 279 73 31 chr6 34281943 34282066 -148133176 - HAL1 LINE L1 -859 1648 1532 2268 124 3 0 chr6 34282066 34282372 -148132870 + AluSq SINE Alu 1 307 -6 1902 172 23 3 chr6 34282376 34282679 -148132563 + AluJb SINE Alu 1 309 -3 1027 279 73 31 chr6 34282679 34282849 -148132393 - HAL1 LINE L1 -977 1530 1322 2296 98 3 0 chr6 34282916 34283213 -148132029 - AluY SINE Alu -13 298 1 1477 99 42 0 chr6 34283354 34283546 -148131696 - AluSg/x SINE Alu -40 272 73 1012 286 165 43 chr6 34283552 34283779 -148131463 - HAL1 LINE L1 -1669 838 640 180 0 0 0 chr6 34283779 34283799 -148131443 + (TTGGGG)n Simple_repeat Simple_repeat 3 22 0 1012 286 165 43 chr6 34283799 34283939 -148131303 - HAL1 LINE L1 -1867 640 518 1819 137 3 81 chr6 34283939 34284274 -148130968 + AluSx SINE Alu 4 312 0 1012 286 165 43 chr6 34284274 34284555 -148130687 - HAL1 LINE L1 -1989 518 110 1942 182 0 3 chr6 34284575 34284888 -148130354 + AluJb SINE Alu 1 312 0 768 73 18 0 chr6 34284911 34285021 -148130221 - HY1 scRNA scRNA 0 112 1 518 16 0 0 chr6 34285050 34285114 -148130128 + AluY SINE Alu 233 296 -16 297 250 0 0 chr6 34285124 34285184 -148130058 - HAL1 LINE L1 -2438 69 10 2592 64 0 0 chr6 34285202 34285499 -148129743 - AluY SINE Alu -14 297 1 362 290 184 37 chr6 34285502 34285774 -148129468 + L2 LINE L2 2652 2963 -351 201 39 0 0 chr6 34285788 34285814 -148129428 + (ACTG)n Simple_repeat Simple_repeat 1 26 0 492 62 0 0 chr6 34285816 34285880 -148129362 + (TCCG)n Simple_repeat Simple_repeat 2 65 0 1891 127 33 11 chr6 34285893 34286168 -148129074 - AluSx SINE Alu -31 281 1 712 330 47 20 chr6 34286201 34286543 -148128699 + L2 LINE L2 2959 3309 -4 205 368 21 0 chr6 34286606 34286701 -148128541 - MIR3 SINE MIR -41 167 71 420 222 154 86 chr6 34286727 34286889 -148128353 - MER5A DNA MER1_type -8 181 9 2886 188 64 14 chr6 34287048 34287669 -148127573 + MER82 DNA MER2_type 1 652 -1 607 301 68 0 chr6 34287766 34287929 -148127313 - MER91A DNA MER1_type 0 196 23 2404 112 0 0 chr6 34287973 34288278 -148126964 - AluSg SINE Alu -5 305 1 1792 160 17 0 chr6 34288278 34288572 -148126670 - AluJb SINE Alu -13 299 1 198 0 0 0 chr6 34289445 34289467 -148125775 + (T)n Simple_repeat Simple_repeat 1 22 0 1806 109 0 0 chr6 34289467 34289697 -148125545 - AluSq SINE Alu -83 230 1 599 183 1 7 chr6 34293435 34293449 -148121793 - L1PA16 LINE L1 -134 6022 6009 1918 85 0 12 chr6 34293449 34293697 -148121545 - AluSc SINE Alu -10 299 55 599 183 1 7 chr6 34293697 34293807 -148121435 - L1PA16 LINE L1 -147 6009 5903 445 81 0 0 chr6 34293807 34293869 -148121373 - AluSc SINE Alu -246 63 2 2217 132 3 0 chr6 34294073 34294428 -148120814 + L1PA16 LINE L1 5799 6154 -12 608 160 104 0 chr6 34294476 34294582 -148120660 + FLAM_C SINE Alu 5 121 -22 186 43 0 0 chr6 34294582 34294605 -148120637 + (CAA)n Simple_repeat Simple_repeat 2 24 0 262 68 23 0 chr6 34294605 34294649 -148120593 + L1M1 LINE L1 5788 5832 -468 1684 141 30 8 chr6 34294989 34295152 -148120090 - AluJb SINE Alu -14 298 125 495 0 0 0 chr6 34295152 34295207 -148120035 + (TA)n Simple_repeat Simple_repeat 1 55 0 1684 141 30 8 chr6 34295207 34295305 -148119937 - AluJb SINE Alu -187 125 31 233 196 0 0 chr6 34295510 34295556 -148119686 + CT-rich Low_complexity Low_complexity 2 47 0 2436 112 0 0 chr6 34295612 34295924 -148119318 + AluSx SINE Alu 1 312 0 246 355 86 43 chr6 34295968 34296224 -148119018 - L2 LINE L2 -179 3093 2827 207 321 25 37 chr6 34296673 34296754 -148118488 + L2 LINE L2 3186 3265 -7 444 258 62 67 chr6 34297985 34298194 -148117048 + L2 LINE L2 3098 3305 -8 358 281 156 0 chr6 34298741 34298908 -148116334 + MIR SINE MIR 49 241 -21 1982 147 0 3 chr6 34299174 34299491 -148115751 - AluJo SINE Alu 0 316 1 21 0 0 0 chr6 34299491 34299512 -148115730 + AT_rich Low_complexity Low_complexity 1 21 0 2398 88 0 3 chr6 34299516 34299810 -148115432 + AluSg SINE Alu 1 293 -17 1999 80 53 8 chr6 34299810 34300071 -148115171 - AluSx SINE Alu -37 275 2 206 206 0 0 chr6 34300361 34300395 -148114847 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 369 256 22 0 chr6 34300514 34300604 -148114638 + L2 LINE L2 3182 3273 -40 205 324 15 0 chr6 34300842 34300910 -148114332 + MIR3 SINE MIR 132 200 -8 2435 75 10 0 chr6 34302319 34302613 -148112629 + AluSq SINE Alu 1 297 -16 298 283 6 31 chr6 34302729 34302750 -148112492 - L1MA10 LINE L1 0 6334 6314 2267 216 39 21 chr6 34302750 34302995 -148112247 - L1ME1 LINE L1 -8 6158 5919 2333 100 27 0 chr6 34302995 34303296 -148111946 + AluSq SINE Alu 1 309 -4 2267 216 39 21 chr6 34303296 34303619 -148111623 - L1ME1 LINE L1 -247 5919 5580 229 158 0 0 chr6 34303620 34303658 -148111584 + Alu SINE Alu 2 39 -264 1168 112 7 0 chr6 34303658 34303810 -148111432 - AluSx SINE Alu -159 153 1 1493 173 12 4 chr6 34303813 34304061 -148111181 + AluJb SINE Alu 50 299 -13 2289 90 30 7 chr6 34304062 34304361 -148110881 + AluSg SINE Alu 1 306 -4 2250 75 3 14 chr6 34304775 34305081 -148110161 - AluY SINE Alu 0 304 2 447 307 58 54 chr6 34305081 34305274 -148109968 - MIR SINE MIR -36 226 29 187 268 0 0 chr6 34305294 34305335 -148109907 + MIR SINE MIR 21 61 -201 2282 126 0 0 chr6 34305338 34305648 -148109594 - AluSg SINE Alu 0 310 1 1620 193 0 39 chr6 34305648 34305952 -148109290 - AluJo SINE Alu -17 295 3 256 351 146 0 chr6 34305957 34306122 -148109120 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 34306639 34306664 -148108578 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 920 199 24 15 chr6 34306690 34306721 -148108521 - MER3 DNA MER1_type 0 209 180 2261 115 0 7 chr6 34306721 34306890 -148108352 - AluSx SINE Alu -10 302 134 2407 74 0 7 chr6 34306890 34307207 -148108035 - AluY SINE Alu 0 311 2 2261 115 0 7 chr6 34307207 34307341 -148107901 - AluSx SINE Alu -178 134 1 920 199 24 15 chr6 34307341 34307515 -148107727 - MER3 DNA MER1_type -29 180 2 428 144 0 56 chr6 34308436 34308526 -148106716 - AluJ/FRAM SINE Alu -8 304 220 1444 175 20 4 chr6 34308783 34309029 -148106213 - AluJo SINE Alu -62 250 1 2440 79 7 0 chr6 34309459 34309763 -148105479 - AluSp SINE Alu -7 306 1 305 276 31 24 chr6 34309821 34309948 -148105294 - LTR67 LTR ERVL -17 540 413 289 299 41 10 chr6 34310394 34310491 -148104751 + MIR SINE MIR 156 255 -7 456 251 37 55 chr6 34310516 34310623 -148104619 - MER63A DNA MER1_type -1478 210 103 2779 163 124 67 chr6 34310623 34310723 -148104519 - MER39 LTR ERV1 0 707 614 1732 189 33 0 chr6 34310723 34311024 -148104218 - AluJb SINE Alu -1 311 1 2779 163 124 67 chr6 34311024 34311141 -148104101 - MER39 LTR ERV1 -93 614 505 2363 116 0 0 chr6 34311141 34311444 -148103798 + AluSx SINE Alu 1 303 -9 2779 163 124 67 chr6 34311444 34311476 -148103766 - MER39 LTR ERV1 -202 505 476 2553 77 3 0 chr6 34311476 34311786 -148103456 + AluSp SINE Alu 1 311 -2 2779 163 124 67 chr6 34311786 34312203 -148103039 - MER39 LTR ERV1 -231 476 1 456 251 37 55 chr6 34312203 34312258 -148102984 - MER63A DNA MER1_type -1585 103 51 648 317 147 18 chr6 34312357 34312739 -148102503 - MLT1J LTR MaLR -6 505 75 241 319 66 56 chr6 34312903 34313157 -148102085 - L2 LINE L2 -470 2844 2585 8627 64 5 7 chr6 34313157 34314231 -148101011 - MER11C LTR ERVK 0 1071 1 241 319 66 56 chr6 34314231 34314264 -148100978 - L2 LINE L2 -729 2585 2554 2281 123 0 0 chr6 34314394 34314702 -148100540 - AluSq SINE Alu -5 308 1 1681 166 0 56 chr6 34314704 34315024 -148100218 - AluJo SINE Alu -9 303 2 1035 229 117 40 chr6 34315030 34315432 -148099810 - LTR16A1 LTR ERVL 0 457 25 213 316 19 52 chr6 34315453 34315608 -148099634 - L2 LINE L2 -954 2360 2211 1666 175 4 18 chr6 34315614 34315948 -148099294 - AluJb SINE Alu 0 336 7 940 231 154 21 chr6 34316180 34316492 -148098750 - MLT1G LTR MaLR 0 590 321 1793 149 23 46 chr6 34316492 34316794 -148098448 - AluJb SINE Alu -17 295 1 940 231 154 21 chr6 34316794 34316981 -148098261 - MLT1G LTR MaLR -269 321 1 213 272 39 0 chr6 34317219 34317290 -148097952 - MIR SINE MIR -107 155 82 386 250 47 0 chr6 34318527 34318655 -148096587 - L1ME4a LINE L1 -11 6110 5977 243 306 118 63 chr6 34318667 34319014 -148096228 + L2 LINE L2 2909 3274 -39 375 303 76 0 chr6 34319090 34319209 -148096033 - L2 LINE L2 -8 3264 3137 579 284 60 22 chr6 34319341 34319524 -148095718 - MIR3 SINE MIR -3 205 16 479 315 62 45 chr6 34319526 34319854 -148095388 + L2 LINE L2 2449 2770 -544 1522 167 20 106 chr6 34319854 34320002 -148095240 - MLT1A2 LTR MaLR 0 374 215 1831 106 94 4 chr6 34320002 34320306 -148094936 - AluSc SINE Alu 0 309 1 2376 99 3 13 chr6 34320308 34320620 -148094622 - AluSx SINE Alu -3 309 1 1522 167 20 106 chr6 34320620 34320875 -148094367 - MLT1A2 LTR MaLR -160 214 3 479 315 62 45 chr6 34320875 34320946 -148094296 + L2 LINE L2 2770 2855 -459 439 315 50 50 chr6 34321057 34321298 -148093944 + L2 LINE L2 3007 3247 -25 2442 98 0 0 chr6 34321920 34322217 -148093025 + AluSq SINE Alu 1 297 -16 300 164 79 145 chr6 34322217 34322369 -148092873 + L1ME3 LINE L1 5968 6109 -53 23 0 0 0 chr6 34322390 34322413 -148092829 + AT_rich Low_complexity Low_complexity 1 23 0 1951 170 20 0 chr6 34322421 34322727 -148092515 + AluJb SINE Alu 1 312 0 1007 216 22 86 chr6 34322758 34323119 -148092123 + L1ME1 LINE L1 5811 6148 -18 26 0 0 0 chr6 34323119 34323145 -148092097 + AT_rich Low_complexity Low_complexity 1 26 0 583 122 0 0 chr6 34324109 34324191 -148091051 + AluS SINE Alu 5 86 -226 452 148 0 0 chr6 34324192 34324264 -148090978 - AluS SINE Alu -237 66 1 2404 60 0 10 chr6 34324515 34324816 -148090426 - AluY SINE Alu -13 298 1 2236 113 3 3 chr6 34324816 34325117 -148090125 - AluSx SINE Alu -11 301 1 379 359 30 0 chr6 34325149 34325280 -148089962 + MIR SINE MIR 20 154 -108 1172 227 65 36 chr6 34325388 34325696 -148089546 + MLT1I LTR MaLR 93 409 0 1851 167 3 7 chr6 34325826 34326119 -148089123 - AluJo SINE Alu -20 292 1 234 325 0 17 chr6 34326187 34326307 -148088935 + A-rich Low_complexity Low_complexity 2 119 0 2123 137 0 0 chr6 34326318 34326661 -148088581 + AluSx SINE Alu 1 343 0 416 299 131 53 chr6 34326877 34327410 -148087832 - L2 LINE L2 -20 3252 2674 507 149 6 119 chr6 34327537 34327594 -148087648 - MER83 LTR ERV1 0 448 386 2391 88 0 16 chr6 34327594 34327899 -148087343 + AluSx SINE Alu 1 300 -12 507 149 6 119 chr6 34327899 34328067 -148087175 - MER83 LTR ERV1 -62 386 114 6570 154 23 16 chr6 34328069 34329189 -148086053 - MER83-int LTR ERV1 -3741 1139 12 1604 175 73 80 chr6 34329189 34329640 -148085602 - MER83 LTR ERV1 0 448 1 374 257 59 103 chr6 34329641 34329739 -148085503 - MIR SINE MIR -19 243 142 2321 103 0 0 chr6 34329739 34330031 -148085211 - AluSc SINE Alu -17 292 1 374 257 59 103 chr6 34330031 34330185 -148085057 - MIR SINE MIR -120 142 2 218 303 98 32 chr6 34330268 34330460 -148084782 - MIR SINE MIR -56 206 1 197 234 16 47 chr6 34331318 34331382 -148083860 - MIR SINE MIR -64 198 137 2176 136 42 112 chr6 34331385 34331622 -148083620 - L1MB3 LINE L1 -7 6176 5924 1676 115 0 0 chr6 34331622 34331848 -148083394 - AluSc SINE Alu 0 309 84 2176 136 42 112 chr6 34331848 34331875 -148083367 - L1MB3 LINE L1 -259 5924 5897 1922 134 51 0 chr6 34331875 34332150 -148083092 + AluSx SINE Alu 1 289 -23 2137 99 39 0 chr6 34332158 34332442 -148082800 + AluSx SINE Alu 1 295 -17 2176 136 42 112 chr6 34332442 34332479 -148082763 - L1MB3 LINE L1 -288 5895 4790 2321 99 0 3 chr6 34332479 34332772 -148082470 - AluSp SINE Alu -18 295 4 469 243 62 82 chr6 34332777 34332892 -148082350 - L1MD3 LINE L1 -2104 5891 5775 1928 160 0 20 chr6 34332892 34333198 -148082044 - AluJb SINE Alu -12 300 1 469 243 62 82 chr6 34333198 34333325 -148081917 - L1MD3 LINE L1 -2220 5775 5654 233 146 0 0 chr6 34333296 34333344 -148081898 - L1MB7 LINE L1 -7 6177 6130 * 537 106 0 75 chr6 34333348 34333442 -148081800 + AluSg/x SINE Alu 210 296 -16 4148 141 70 43 chr6 34333442 34333473 -148081769 - L1MB7 LINE L1 -47 6137 6108 2160 108 10 0 chr6 34333473 34333769 -148081473 - AluSg SINE Alu -10 300 2 4148 141 70 43 chr6 34333769 34334442 -148080800 - L1MB7 LINE L1 -76 6108 5455 2166 94 49 3 chr6 34334442 34334728 -148080514 - AluSx SINE Alu -13 299 1 4148 141 70 43 chr6 34334728 34334950 -148080292 - L1MB7 LINE L1 -729 5455 5240 889 133 0 15 chr6 34334950 34335085 -148080157 - FLAM_C SINE Alu 0 133 1 4148 141 70 43 chr6 34335085 34335360 -148079882 - L1MB7 LINE L1 -944 5240 4912 840 126 0 0 chr6 34335413 34335532 -148079710 + FLAM_C SINE Alu 1 119 -24 195 42 0 0 chr6 34335536 34335560 -148079682 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 308 297 0 50 chr6 34335561 34335662 -148079580 + L2 LINE L2 3176 3271 -1 265 244 47 12 chr6 34335661 34335747 -148079495 - MIR SINE MIR -126 136 48 * 2393 79 17 0 chr6 34335761 34336052 -148079190 - AluSc SINE Alu -13 296 1 2209 85 17 0 chr6 34336155 34336500 -148078742 + AluSq SINE Alu 1 313 0 251 260 328 11 chr6 34337192 34337369 -148077873 - MIR SINE MIR -10 252 20 477 201 85 39 chr6 34337508 34337711 -148077531 - MER63 DNA MER1_type 0 1060 1 2206 108 34 0 chr6 34337713 34338009 -148077233 - AluSx SINE Alu -6 306 1 662 171 70 23 chr6 34338479 34338608 -148076634 - AluJo SINE Alu -93 219 85 1904 164 17 0 chr6 34338741 34339033 -148076209 + AluJb SINE Alu 1 297 -15 479 346 23 68 chr6 34339997 34340128 -148075114 - L2 LINE L2 0 3272 3157 2398 82 0 10 chr6 34340128 34340434 -148074808 - AluSq SINE Alu -10 303 1 479 346 23 68 chr6 34340434 34340568 -148074674 - L2 LINE L2 -115 3157 3019 199 276 103 0 chr6 34340601 34340659 -148074583 + L2 LINE L2 3160 3223 -49 339 314 0 0 chr6 34340880 34340966 -148074276 + MIR SINE MIR 44 129 -133 2483 67 0 0 chr6 34341071 34341370 -148073872 - AluY SINE Alu -12 299 1 2350 88 0 0 chr6 34341677 34341986 -148073256 - AluSg SINE Alu 0 309 1 1941 161 0 13 chr6 34341994 34342293 -148072949 - AluJb SINE Alu -17 295 1 2263 84 61 3 chr6 34342793 34343089 -148072153 - AluSq SINE Alu 0 313 1 1202 202 116 27 chr6 34343635 34343893 -148071349 + AluJb SINE Alu 12 292 -20 183 42 0 0 chr6 34344166 34344190 -148071052 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 199 317 24 12 chr6 34344596 34344678 -148070564 + MIR SINE MIR 170 252 -10 2189 125 0 0 chr6 34345298 34345620 -148069622 - AluSx SINE Alu 0 322 1 1631 163 19 0 chr6 34345862 34346120 -148069122 - AluJo SINE Alu -49 263 1 230 121 0 0 chr6 34346166 34346199 -148069043 + Alu SINE Alu 1 33 -269 713 200 6 62 chr6 34346252 34346412 -148068830 - AluJb SINE Alu -144 168 18 935 246 17 61 chr6 34346431 34346838 -148068404 - L1MC5 LINE L1 -436 7525 7137 1259 232 74 61 chr6 34346889 34347415 -148067827 - L1MC5 LINE L1 -812 7149 6617 24 0 0 0 chr6 34347452 34347476 -148067766 + AT_rich Low_complexity Low_complexity 1 24 0 1700 196 82 54 chr6 34347684 34348113 -148067129 - LTR47B LTR ERVL -2 441 1 380 246 138 7 chr6 34348391 34348529 -148066713 - L1MC5 LINE L1 -1925 5883 5728 189 0 0 0 chr6 34348529 34348550 -148066692 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 675 152 62 18 chr6 34348563 34348675 -148066567 - AluJb SINE Alu -194 118 2 1001 263 53 19 chr6 34348676 34348999 -148066243 - L1MC5 LINE L1 -2072 5736 5403 198 0 0 0 chr6 34349000 34349022 -148066220 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 319 256 126 51 chr6 34349022 34349037 -148066205 - L1MC5 LINE L1 -983 5163 5151 1552 112 0 0 chr6 34349037 34349234 -148066008 - AluSg SINE Alu -113 197 1 319 256 126 51 chr6 34349234 34349433 -148065809 - L1MC5 LINE L1 -995 5151 4933 2190 116 13 0 chr6 34349823 34350126 -148065116 - AluSx SINE Alu -5 307 1 196 294 181 1 chr6 34350366 34350550 -148064692 - MIR SINE MIR -28 234 8 211 305 76 34 chr6 34350693 34350811 -148064431 + L2 LINE L2 3150 3272 0 2192 109 17 3 chr6 34350999 34351301 -148063941 + AluSx SINE Alu 5 310 -2 334 344 0 0 chr6 34351310 34351400 -148063842 + L1MC4 LINE L1 6614 6703 -1339 2131 132 0 16 chr6 34351758 34352068 -148063174 + AluSq SINE Alu 1 305 -8 2393 97 0 6 chr6 34352068 34352378 -148062864 + AluSc SINE Alu 1 309 0 2232 101 0 11 chr6 34352395 34352708 -148062534 + AluSx SINE Alu 1 310 0 4211 150 85 80 chr6 34353217 34354143 -148061099 - MER21A LTR ERV1 0 931 1 2076 121 10 3 chr6 34354245 34354534 -148060708 - AluSx SINE Alu -21 291 1 1549 149 72 57 chr6 34354666 34354799 -148060443 - MER39 LTR ERV1 -16 691 561 2257 128 0 6 chr6 34354799 34355111 -148060131 + AluSx SINE Alu 1 310 -2 1549 149 72 57 chr6 34355111 34355326 -148059916 - MER39 LTR ERV1 -146 561 338 1382 153 5 5 chr6 34355326 34355549 -148059693 - pTR5 LTR ERV1 -2046 392 170 285 303 0 0 chr6 34355550 34355649 -148059593 - LTR30 LTR ERV1 -80 642 544 4036 156 46 49 chr6 34355650 34356614 -148058628 - pTR5 LTR ERV1 -414 2024 743 1601 149 76 6 chr6 34356614 34356930 -148058312 - MER39 LTR ERV1 -366 341 4 2022 118 13 23 chr6 34356968 34357273 -148057969 - AluSx SINE Alu -10 302 1 1920 167 0 16 chr6 34357539 34357845 -148057397 + AluJo SINE Alu 3 303 -9 242 95 24 0 chr6 34357856 34357898 -148057344 + Charlie8 DNA MER1_type 87 129 -2288 968 208 56 5 chr6 34357907 34358104 -148057138 + AluJo SINE Alu 86 292 -20 2374 94 0 7 chr6 34358564 34358862 -148056380 + AluSx SINE Alu 1 296 -16 2188 180 59 21 chr6 34359312 34359834 -148055408 + MER74A LTR ERVL 4 545 -13 1867 155 3 30 chr6 34359916 34360241 -148055001 + AluSx SINE Alu 1 312 0 1648 177 0 32 chr6 34360255 34360532 -148054710 + AluJo SINE Alu 6 273 -39 560 229 84 12 chr6 34360569 34360735 -148054507 + L2 LINE L2 3100 3277 -36 254 289 20 86 chr6 34360768 34360965 -148054277 - MLT1J LTR MaLR -215 296 113 2387 78 14 0 chr6 34361122 34361416 -148053826 - AluY SINE Alu -13 298 1 2255 117 0 7 chr6 34361457 34361765 -148053477 - AluSx SINE Alu -4 308 3 263 28 28 0 chr6 34362010 34362046 -148053196 + (TG)n Simple_repeat Simple_repeat 1 37 0 1072 187 10 30 chr6 34362224 34362422 -148052820 - AluJo SINE Alu -118 194 1 1607 131 64 17 chr6 34362422 34362719 -148052523 - MER39 LTR ERV1 -396 311 1 539 255 98 21 chr6 34363202 34363437 -148051805 + MLT1J LTR MaLR 230 482 -29 1899 122 10 56 chr6 34363455 34363758 -148051484 - AluSq SINE Alu -24 289 1 368 104 30 30 chr6 34363758 34363825 -148051417 - AluSc SINE Alu -7 292 226 7159 121 128 97 chr6 34363828 34365473 -148049769 - pTR5 LTR ERV1 0 2438 742 1801 109 0 0 chr6 34365473 34365703 -148049539 - AluSx SINE Alu -82 230 1 216 250 0 0 chr6 34365898 34365953 -148049289 + MIR SINE MIR 102 157 -51 1518 143 0 41 chr6 34366221 34366466 -148048776 - AluJb SINE Alu -21 291 57 2150 120 3 0 chr6 34366714 34367006 -148048236 + AluSx SINE Alu 1 293 -19 2398 73 3 3 chr6 34367671 34367971 -148047271 - AluSc SINE Alu -9 300 1 279 328 189 22 chr6 34368396 34368825 -148046417 - L2 LINE L2 -1004 2310 1789 1166 262 90 31 chr6 34368825 34369249 -148045993 + LTR16A LTR ERVL 2 450 0 279 328 189 22 chr6 34369249 34369307 -148045935 - L2 LINE L2 -1525 1789 1742 414 219 37 0 chr6 34369315 34369397 -148045845 + FRAM/FAM SINE Alu 1 77 -99 2065 127 27 13 chr6 34369506 34369678 -148045564 - AluJb SINE Alu -8 304 125 2331 94 3 3 chr6 34369678 34369977 -148045265 - AluSp SINE Alu -14 299 1 2065 127 27 13 chr6 34369977 34370104 -148045138 - AluJb SINE Alu -187 125 1 333 414 30 20 chr6 34370105 34370303 -148044939 - L3 LINE CR1 -1351 226 27 224 264 299 0 chr6 34371400 34371487 -148043755 - L2 LINE L2 0 3272 3160 2417 98 0 0 chr6 34371658 34371963 -148043279 + AluSg SINE Alu 1 305 -5 456 123 0 0 chr6 34371995 34372068 -148043174 + (TTC)n Simple_repeat Simple_repeat 3 75 0 365 167 0 0 chr6 34372070 34372136 -148043106 - Alu SINE Alu -1 301 236 1902 172 3 3 chr6 34372418 34372720 -148042522 + AluJo SINE Alu 5 306 -6 259 208 0 0 chr6 34372793 34372841 -148042401 + MER57A LTR ERV1 292 339 -64 1308 120 0 0 chr6 34372848 34373031 -148042211 + AluSg/x SINE Alu 121 303 -9 216 245 0 75 chr6 34373214 34373267 -148041975 - MIR3 SINE MIR -49 159 111 288 258 32 11 chr6 34373347 34373440 -148041802 + MER5B DNA MER1_type 18 112 -66 2243 70 39 3 chr6 34373807 34374091 -148041151 - AluSx SINE Alu -18 294 1 527 273 105 6 chr6 34374419 34374591 -148040651 - MIR SINE MIR -1 261 73 2189 110 0 38 chr6 34374666 34374983 -148040259 + AluSx SINE Alu 1 305 -7 672 171 39 23 chr6 34375120 34375249 -148039993 - FLAM_A SINE Alu -2 131 1 343 194 45 0 chr6 34378224 34378291 -148036951 - MER50 LTR ERV1 -6 728 659 1217 127 42 14 chr6 34378301 34378513 -148036729 - MER50 LTR ERV1 -516 218 1 1075 170 0 0 chr6 34379662 34379827 -148035415 + FRAM SINE Alu 1 165 -1 1522 251 53 2 chr6 34380364 34380782 -148034460 + L1ME3A LINE L1 5724 6162 -8 1810 92 113 35 chr6 34380804 34381086 -148034156 + AluSx SINE Alu 1 304 -8 1396 199 138 39 chr6 34381239 34381681 -148033561 + MLT2B1 LTR ERVL 5 490 -30 237 60 20 40 chr6 34381694 34381744 -148033498 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2157 151 0 0 chr6 34381749 34382061 -148033181 - AluJo SINE Alu 0 312 1 1017 216 124 105 chr6 34382363 34382580 -148032662 + MLT1H1 LTR MaLR 5 217 -338 2480 88 0 3 chr6 34382580 34382885 -148032357 + AluSg SINE Alu 1 304 -6 1017 216 124 105 chr6 34382885 34382897 -148032345 + MLT1H1 LTR MaLR 217 227 -328 1609 167 37 0 chr6 34382897 34383166 -148032076 + AluJo SINE Alu 1 279 -33 1017 216 124 105 chr6 34383166 34383476 -148031766 + MLT1H1 LTR MaLR 227 555 0 1716 172 46 54 chr6 34384137 34384445 -148030797 + MLT1A2 LTR MaLR 3 309 -65 1803 155 3 42 chr6 34384445 34384589 -148030653 + AluJb SINE Alu 1 128 -184 2363 93 0 3 chr6 34384589 34384889 -148030353 + AluSx SINE Alu 6 304 -8 1803 155 3 42 chr6 34384889 34385053 -148030189 + AluJb SINE Alu 128 297 -15 1716 172 46 54 chr6 34385053 34385116 -148030126 + MLT1A2 LTR MaLR 309 371 -3 1688 144 50 14 chr6 34385647 34385925 -148029317 - AluJo SINE Alu -24 288 1 1528 271 53 27 chr6 34386000 34386601 -148028641 - L1MC4a LINE L1 -1733 6075 5459 32 57 0 0 chr6 34386947 34387000 -148028242 + AT_rich Low_complexity Low_complexity 1 53 0 2336 108 0 3 chr6 34387207 34387514 -148027728 - AluSc SINE Alu -3 306 1 465 215 51 82 chr6 34387675 34387870 -148027372 - MLT1J LTR MaLR -33 478 290 2409 99 0 0 chr6 34387907 34388209 -148027033 - AluSq SINE Alu -7 306 5 319 164 0 41 chr6 34388728 34388753 -148026489 - MER72 LTR ERV1 0 722 698 1400 172 122 7 chr6 34388753 34388875 -148026367 + AluJo SINE Alu 1 108 -204 234 0 0 0 chr6 34388875 34388901 -148026341 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1400 172 122 7 chr6 34388901 34389057 -148026185 + AluJo SINE Alu 108 311 -1 319 164 0 41 chr6 34389057 34389104 -148026138 - MER72 LTR ERV1 -24 698 653 649 146 10 0 chr6 34389107 34389203 -148026039 + AluJ/FLAM SINE Alu 3 99 -213 1641 127 15 42 chr6 34389204 34389552 -148025690 - MER61C LTR ERV1 0 434 1 1084 159 0 0 chr6 34389589 34389759 -148025483 + FRAM SINE Alu 1 170 -6 975 262 118 3 chr6 34389812 34390159 -148025083 - LTR16C LTR ERVL 0 491 105 4351 151 61 24 chr6 34390587 34391151 -148024091 + MER49 LTR ERV1 1 607 -316 2417 76 6 19 chr6 34391151 34391465 -148023777 - AluY SINE Alu -1 310 1 4351 151 61 24 chr6 34391465 34391733 -148023509 + MER49 LTR ERV1 607 864 -59 1380 159 0 14 chr6 34391733 34391953 -148023289 - AluJb SINE Alu -1 311 95 1512 129 20 31 chr6 34391953 34392295 -148022947 + MER61C LTR ERV1 3 434 0 205 222 10 61 chr6 34392529 34392628 -148022614 + GA-rich Low_complexity Low_complexity 2 95 0 198 0 0 0 chr6 34393609 34393631 -148021611 + (T)n Simple_repeat Simple_repeat 1 22 0 4157 125 44 2 chr6 34393649 34394263 -148020979 - LTR9B LTR ERV1 0 644 5 1722 143 8 11 chr6 34394268 34394534 -148020708 - AluSq SINE Alu -48 265 1 675 205 0 0 chr6 34394683 34394800 -148020442 + FLAM_C SINE Alu 1 117 -26 2412 99 0 3 chr6 34394804 34395116 -148020126 - AluSq SINE Alu 0 313 3 23 0 0 0 chr6 34395142 34395165 -148020077 + AT_rich Low_complexity Low_complexity 1 23 0 2356 106 0 3 chr6 34395165 34395477 -148019765 + AluSx SINE Alu 1 311 -1 814 94 0 0 chr6 34395552 34395658 -148019584 + AluSg/x SINE Alu 196 301 -8 1438 145 31 120 chr6 34395931 34396255 -148018987 + AluJo SINE Alu 1 295 -17 1413 233 87 74 chr6 34396416 34397052 -148018190 - MER21B LTR ERV1 -192 671 28 29 94 0 0 chr6 34397626 34397711 -148017531 + AT_rich Low_complexity Low_complexity 1 85 0 258 299 45 23 chr6 34398198 34398375 -148016867 - L1MC5 LINE L1 -52 7909 7729 2416 108 19 17 chr6 34398847 34399209 -148016033 + THE1B LTR MaLR 1 363 -1 2011 140 6 32 chr6 34399209 34399523 -148015719 + AluSx SINE Alu 1 306 -6 10193 99 43 43 chr6 34399536 34401115 -148014127 + THE1B-int LTR MaLR 2 1580 0 2043 139 37 32 chr6 34401115 34401471 -148013771 + THE1B LTR MaLR 1 367 -61 2285 109 23 0 chr6 34401471 34401775 -148013467 - AluSx SINE Alu -1 311 1 2043 139 37 32 chr6 34401775 34401838 -148013404 + THE1B LTR MaLR 367 428 0 822 234 9 53 chr6 34401863 34402150 -148013092 + L1ME1 LINE L1 5872 6291 -21 2570 68 0 3 chr6 34402173 34402484 -148012758 + AluY SINE Alu 1 310 -1 3993 138 19 17 chr6 34402646 34402835 -148012407 - MER41B LTR ERV1 -2 633 446 2050 112 58 0 chr6 34402835 34403129 -148012113 - AluSx SINE Alu -1 311 1 3993 138 19 17 chr6 34403129 34403571 -148011671 - MER41B LTR ERV1 -189 446 1 1101 278 80 17 chr6 34403989 34404464 -148010778 + MLT1J LTR MaLR 1 505 -6 286 306 126 9 chr6 34406098 34406209 -148009033 - L2 LINE L2 0 3272 3149 1995 161 7 0 chr6 34406595 34406905 -148008337 + AluJb SINE Alu 1 312 0 723 246 77 0 chr6 34407004 34407211 -148008031 + MLT1J LTR MaLR 1 223 -288 2189 133 0 0 chr6 34407246 34407546 -148007696 + AluSx SINE Alu 1 300 -12 2139 136 44 33 chr6 34407562 34407922 -148007320 - THE1B LTR MaLR 0 364 1 10098 85 26 82 chr6 34407922 34408975 -148006267 - THE1B-int LTR MaLR 0 1580 469 981 87 63 0 chr6 34408975 34409102 -148006140 + AluJb SINE Alu 1 135 -177 2289 110 3 13 chr6 34409102 34409411 -148005831 + AluSx SINE Alu 1 306 -6 10098 85 26 82 chr6 34409411 34409904 -148005338 - THE1B-int LTR MaLR -1109 471 1 2211 133 33 41 chr6 34409904 34410271 -148004971 - THE1B LTR MaLR 0 364 1 1465 193 4 23 chr6 34410274 34410538 -148004704 + AluJo SINE Alu 24 282 -30 2237 123 7 0 chr6 34411375 34411676 -148003566 - AluSg SINE Alu -7 303 1 1706 125 110 115 chr6 34411783 34411945 -148003297 + MSTA LTR MaLR 22 183 -245 2312 98 13 0 chr6 34411945 34412252 -148002990 + AluSp SINE Alu 1 311 -2 1706 125 110 115 chr6 34412252 34412498 -148002744 + MSTA LTR MaLR 183 428 0 982 111 4 183 chr6 34412889 34413124 -148002118 + 7SK RNA RNA 1 193 0 2693 152 21 2 chr6 34413792 34414212 -148001030 - MSTA LTR MaLR 0 428 1 1473 195 34 0 chr6 34414355 34414653 -148000589 + AluJo SINE Alu 1 308 -4 4929 118 48 5 chr6 34414788 34415594 -147999648 - Tigger1 DNA MER2_type -1 2417 1577 2339 103 0 0 chr6 34415610 34415922 -147999320 - AluSq SINE Alu -1 312 1 1026 91 0 0 chr6 34415924 34416056 -147999186 - AluSq/x SINE Alu -180 132 1 5064 98 1 12 chr6 34416056 34416808 -147998434 - Tigger1 DNA MER2_type -829 1589 846 237 108 0 0 chr6 34416893 34416930 -147998312 + (TG)n Simple_repeat Simple_repeat 2 38 0 404 115 0 39 chr6 34416941 34417019 -147998223 + MLT1F LTR MaLR 468 542 0 4601 170 56 67 chr6 34417444 34418526 -147996716 + MER11C LTR ERVK 1 1071 0 1080 246 67 29 chr6 34418624 34418644 -147996598 - MLT1I LTR MaLR 0 409 391 2215 100 0 3 chr6 34418644 34418943 -147996299 + AluSc SINE Alu 1 298 -11 1080 246 67 29 chr6 34418943 34418969 -147996273 - MLT1I LTR MaLR -18 391 367 1998 147 0 0 chr6 34418969 34419268 -147995974 - AluSx SINE Alu -13 299 1 1080 246 67 29 chr6 34419268 34419561 -147995681 - MLT1I LTR MaLR -42 367 56 309 180 22 11 chr6 34419561 34419650 -147995592 - L1MDa LINE L1 -4456 2084 1995 753 193 0 0 chr6 34419650 34419769 -147995473 + AluJb SINE Alu 2 120 -192 189 107 0 0 chr6 34419771 34419799 -147995443 + (CA)n Simple_repeat Simple_repeat 1 28 0 629 0 26 0 chr6 34419801 34419877 -147995365 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 5516 196 70 40 chr6 34419878 34420836 -147994406 - L1MDa LINE L1 -4537 2003 1075 1677 181 3 10 chr6 34420836 34421128 -147994114 - AluJb SINE Alu -22 290 1 5516 196 70 40 chr6 34421128 34421189 -147994053 - L1MDa LINE L1 -5465 1075 1017 378 0 0 0 chr6 34421189 34421231 -147994011 + (TG)n Simple_repeat Simple_repeat 2 43 0 5516 196 70 40 chr6 34421231 34421596 -147993646 - L1MDa LINE L1 -5523 1017 576 1709 148 42 61 chr6 34421628 34422005 -147993237 + LTR8A LTR ERV1 358 727 0 644 246 59 27 chr6 34422007 34422194 -147993048 + LTR16C LTR ERVL 299 491 0 715 242 39 13 chr6 34422244 34422430 -147992812 - AluJ SINE Alu 0 302 137 833 142 0 43 chr6 34422430 34422540 -147992702 - AluJ SINE Alu -176 136 32 4111 99 7 14 chr6 34422540 34422863 -147992379 + MER41A LTR ERV1 1 321 -233 2034 114 0 14 chr6 34422863 34423183 -147992059 + AluSq SINE Alu 1 316 0 4111 99 7 14 chr6 34423183 34423416 -147991826 + MER41A LTR ERV1 321 554 0 833 142 0 43 chr6 34423416 34423446 -147991796 - AluJ SINE Alu -280 32 2 2200 81 0 3 chr6 34423447 34423744 -147991498 - AluY SINE Alu -15 296 1 3276 134 81 29 chr6 34423890 34424472 -147990770 + LTR9 LTR ERV1 1 612 0 24 0 0 0 chr6 34424647 34424671 -147990571 + AT_rich Low_complexity Low_complexity 1 24 0 221 268 10 82 chr6 34425155 34425252 -147989990 + MIR SINE MIR 36 125 -83 1278 201 73 28 chr6 34425459 34425603 -147989639 + AluJo SINE Alu 1 137 -165 2287 92 0 0 chr6 34425603 34425906 -147989336 + AluSg SINE Alu 1 303 -7 1278 201 73 28 chr6 34425906 34426049 -147989193 + AluJo SINE Alu 137 301 -1 399 309 36 26 chr6 34426052 34426246 -147988996 + MIR SINE MIR 48 243 -19 855 187 13 0 chr6 34426845 34426995 -147988247 - FRAM SINE Alu -4 172 21 1964 122 0 10 chr6 34427743 34428064 -147987178 - AluSq SINE Alu 0 313 3 1882 121 0 7 chr6 34428078 34428351 -147986891 - AluSx SINE Alu -5 307 37 1746 134 65 0 chr6 34428793 34429070 -147986172 - AluJb SINE Alu -16 296 2 213 111 0 28 chr6 34432192 34432228 -147983014 + (TCC)n Simple_repeat Simple_repeat 1 35 0 223 220 19 57 chr6 34432825 34432984 -147982258 + (CGGG)n Simple_repeat Simple_repeat 2 154 0 247 286 0 13 chr6 34433072 34433149 -147982093 + G-rich Low_complexity Low_complexity 3 78 0 229 187 0 53 chr6 34433239 34433314 -147981928 + C-rich Low_complexity Low_complexity 1 71 0 409 232 232 0 chr6 34435608 34435750 -147979492 - MER5A DNA MER1_type -1 188 14 182 375 98 0 chr6 34435814 34435926 -147979316 - L3 LINE CR1 -2 1575 1453 230 341 78 15 chr6 34436133 34436403 -147978839 - L1MC4a LINE L1 -1834 5974 5688 864 117 0 35 chr6 34436411 34436556 -147978686 - FLAM_C SINE Alu -1 142 3 302 304 33 21 chr6 34436559 34436978 -147978264 - L1MC4a LINE L1 -487 5675 5219 550 289 12 0 chr6 34437044 34437210 -147978032 + MIR SINE MIR 84 251 -11 443 238 0 57 chr6 34438146 34438268 -147976974 + L2 LINE L2 2204 2318 -996 816 113 8 16 chr6 34438268 34438392 -147976850 - FLAM_C SINE Alu -8 135 13 1323 265 78 26 chr6 34438393 34439113 -147976129 + L2 LINE L2 2308 3060 -253 369 43 0 0 chr6 34440186 34440233 -147975009 + (TG)n Simple_repeat Simple_repeat 2 48 0 362 223 240 0 chr6 34440317 34440438 -147974804 - MER91B DNA MER1_type -1 189 40 304 269 140 31 chr6 34442233 34442426 -147972816 - LTR33 LTR ERVL -134 387 174 383 240 30 0 chr6 34442471 34442571 -147972671 - LTR33 LTR ERVL -418 103 1 2150 114 10 0 chr6 34442628 34442934 -147972308 + AluSq SINE Alu 1 309 -4 254 308 58 25 chr6 34442973 34443093 -147972149 + MIR SINE MIR 77 200 -62 412 160 51 29 chr6 34443663 34443838 -147971404 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 272 200 15 15 chr6 34443854 34443919 -147971323 + (TCCA)n Simple_repeat Simple_repeat 3 67 0 1731 209 65 32 chr6 34449084 34449182 -147966060 - Charlie4a DNA MER1_type -1453 508 415 2012 140 7 3 chr6 34449182 34449490 -147965752 + AluSx SINE Alu 1 309 -3 1731 209 65 32 chr6 34449490 34449883 -147965359 - Charlie4a DNA MER1_type -1546 415 1 576 303 48 63 chr6 34449887 34450061 -147965181 + L3 LINE CR1 681 856 -721 1535 183 37 27 chr6 34450061 34450356 -147964886 + AluJo SINE Alu 1 298 -4 576 303 48 63 chr6 34450356 34450594 -147964648 + L3 LINE CR1 856 1087 -490 2296 83 0 7 chr6 34450713 34451015 -147964227 - AluSg SINE Alu -10 300 1 1003 325 98 27 chr6 34451029 34451804 -147963438 + L2 LINE L2 2346 3174 -98 206 240 20 0 chr6 34451876 34451926 -147963316 + L3 LINE CR1 1295 1345 -232 * 303 274 138 37 chr6 34451925 34452138 -147963104 - MIR SINE MIR 0 262 28 2178 98 0 0 chr6 34452138 34452433 -147962809 - AluSg SINE Alu -15 295 1 303 274 138 37 chr6 34452433 34452448 -147962794 - MIR SINE MIR -234 28 16 1182 149 5 21 chr6 34452537 34452731 -147962511 + AluSg/x SINE Alu 90 280 -32 2008 136 0 16 chr6 34452770 34453087 -147962155 - AluJb SINE Alu 0 312 1 2051 128 13 0 chr6 34453180 34453485 -147961757 - AluSx SINE Alu -3 309 1 225 83 0 0 chr6 34453486 34453522 -147961720 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1954 106 14 14 chr6 34453522 34453806 -147961436 - AluSq SINE Alu -29 284 1 838 228 30 0 chr6 34453812 34453979 -147961263 - AluJo SINE Alu -21 291 120 1097 122 48 32 chr6 34453982 34454152 -147961090 - AluJb SINE Alu -1 311 136 2318 78 3 10 chr6 34454152 34454459 -147960783 - AluSq SINE Alu -6 307 3 1097 122 48 32 chr6 34454459 34454476 -147960766 - AluJb SINE Alu -176 136 121 257 183 0 28 chr6 34454559 34454630 -147960612 + CT-rich Low_complexity Low_complexity 1 69 0 1584 169 0 30 chr6 34454630 34454925 -147960317 - AluJo SINE Alu -26 286 1 225 154 0 0 chr6 34454927 34454966 -147960276 + T-rich Low_complexity Low_complexity 1 39 0 804 112 56 89 chr6 34455332 34455373 -147959869 - AluJo/FRAM SINE Alu -4 308 267 2146 131 0 6 chr6 34455373 34455687 -147959555 + AluSx SINE Alu 1 312 0 804 112 56 89 chr6 34455687 34455824 -147959418 - AluJo/FRAM SINE Alu -45 267 136 2275 87 6 3 chr6 34456143 34456455 -147958787 - AluSq SINE Alu 0 313 1 202 241 0 19 chr6 34456816 34456870 -147958372 + CT-rich Low_complexity Low_complexity 2 54 0 227 186 14 43 chr6 34457059 34457129 -147958113 + GA-rich Low_complexity Low_complexity 1 68 0 2132 128 0 3 chr6 34458953 34459266 -147955976 - AluSx SINE Alu 0 312 1 553 288 46 21 chr6 34461270 34461488 -147953754 + MIR SINE MIR 21 248 -14 23 0 0 0 chr6 34462856 34462879 -147952363 + GC_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr6 34465081 34465105 -147950137 + (TG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr6 34465105 34465128 -147950114 + AT_rich Low_complexity Low_complexity 1 23 0 182 237 0 0 chr6 34465446 34465484 -147949758 + L2 LINE L2 3225 3262 -10 894 269 25 12 chr6 34465904 34466146 -147949096 + MIR SINE MIR 13 257 -5 2197 84 3 0 chr6 34466684 34466993 -147948249 - AluSg SINE Alu 0 310 1 1150 92 0 65 chr6 34467615 34467799 -147947443 - AluSg/x SINE Alu -21 291 120 980 64 7 43 chr6 34467832 34467972 -147947270 - AluY SINE Alu -176 135 1 321 153 62 181 chr6 34467982 34468126 -147947116 + MER58 DNA MER1_type 211 2416 -4 225 239 282 0 chr6 34469009 34469080 -147946162 + L2 LINE L2 3183 3273 -40 342 224 49 104 chr6 34472354 34472537 -147942705 - MER5A DNA MER1_type 0 189 17 334 203 351 14 chr6 34473225 34473373 -147941869 + MIR SINE MIR 1 198 -64 29 28 0 0 chr6 34473441 34473477 -147941765 + AT_rich Low_complexity Low_complexity 1 36 0 233 319 0 0 chr6 34474768 34474837 -147940405 - MIR3 SINE MIR -19 189 121 197 276 0 92 chr6 34475477 34475544 -147939698 - MIR SINE MIR -58 204 145 1752 154 0 47 chr6 34475544 34475715 -147939527 - AluJb SINE Alu -8 304 153 2077 126 0 13 chr6 34475715 34476024 -147939218 - AluSx SINE Alu -7 305 1 1752 154 0 47 chr6 34476024 34476171 -147939071 - AluJb SINE Alu -159 153 1 197 276 0 92 chr6 34476171 34476190 -147939052 - MIR SINE MIR -117 145 126 408 278 144 37 chr6 34476229 34476499 -147938743 - MLT1J LTR MaLR -3 508 210 880 285 88 44 chr6 34476525 34476981 -147938261 - L2 LINE L2 -20 3293 2818 830 186 120 11 chr6 34477030 34477213 -147938029 - MER3 DNA MER1_type -6 203 1 181 286 36 0 chr6 34477213 34477269 -147937973 - L2 LINE L2 -504 2810 2753 833 215 93 15 chr6 34477269 34477474 -147937768 - MLT1J LTR MaLR -289 222 2 1998 100 30 17 chr6 34478079 34478378 -147936864 - AluSx SINE Alu -9 303 1 2665 103 11 0 chr6 34478639 34479016 -147936226 - LTR57 LTR ERVL -30 381 1 337 262 0 23 chr6 34479016 34479112 -147936130 - MIR SINE MIR -63 145 69 374 260 70 50 chr6 34479386 34479529 -147935713 + MIR SINE MIR 45 188 -63 464 130 0 0 chr6 34481087 34481164 -147934078 - HY1 scRNA scRNA 0 112 36 399 206 43 0 chr6 34481416 34481508 -147933734 - MIR SINE MIR -118 144 49 498 75 0 0 chr6 34481895 34481962 -147933280 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 1680 103 157 0 chr6 34481962 34482224 -147933018 - AluSq SINE Alu 0 303 1 283 306 95 7 chr6 34482240 34482387 -147932855 - MIR SINE MIR -37 225 66 980 284 116 14 chr6 34483823 34484136 -147931106 - L1M4 LINE L1 -1002 5144 4758 2370 70 0 7 chr6 34484136 34484436 -147930806 - AluSq SINE Alu -15 298 1 980 284 116 14 chr6 34484436 34484630 -147930612 - L1M4 LINE L1 -1388 4758 4585 247 228 13 38 chr6 34486078 34486157 -147929085 + MIR SINE MIR 89 165 -97 * 384 199 108 17 chr6 34486137 34486284 -147928958 - MIR SINE MIR 0 262 101 379 227 45 83 chr6 34486270 34486402 -147928840 + MIR SINE MIR 136 262 0 * 286 352 83 0 chr6 34486828 34486973 -147928269 + MIR3 SINE MIR 32 188 -20 252 306 102 36 chr6 34487288 34487484 -147927758 + MIR SINE MIR 20 228 -34 1078 189 32 23 chr6 34487681 34487898 -147927344 - MER20 DNA MER1_type 0 219 1 390 202 90 11 chr6 34488372 34488461 -147926781 - L2 LINE L2 -15 3298 3203 520 301 82 11 chr6 34489648 34489831 -147925411 + MER91A DNA MER1_type 1 196 0 2172 119 0 6 chr6 34489916 34490228 -147925014 - AluSx SINE Alu 0 312 3 289 285 131 0 chr6 34490232 34490362 -147924880 - MIR SINE MIR -66 196 50 262 389 8 24 chr6 34490530 34490656 -147924586 - MIR SINE MIR -16 246 123 441 265 137 25 chr6 34492191 34492327 -147922915 - L1ME4a LINE L1 0 6121 5953 678 157 96 0 chr6 34492327 34492442 -147922800 - FLAM_C SINE Alu -3 130 5 441 265 137 25 chr6 34492442 34492509 -147922733 - L1ME4a LINE L1 -168 5953 5895 372 114 63 0 chr6 34492652 34492731 -147922511 + CT-rich Low_complexity Low_complexity 5 88 0 1878 154 23 0 chr6 34492737 34493042 -147922200 - AluSx SINE Alu 0 312 1 438 181 53 0 chr6 34493711 34493805 -147921437 - L2 LINE L2 0 3313 3215 234 0 0 0 chr6 34493805 34493831 -147921411 + (CAGGC)n Simple_repeat Simple_repeat 4 29 0 1222 206 11 35 chr6 34493832 34494138 -147921104 + AluJb SINE Alu 9 307 0 2217 109 0 0 chr6 34494141 34494444 -147920798 + AluY SINE Alu 1 303 -8 184 317 77 10 chr6 34494474 34494578 -147920664 - L2 LINE L2 -158 3155 3045 299 361 48 7 chr6 34494738 34494890 -147920352 - MIR SINE MIR -67 195 37 281 320 31 16 chr6 34495000 34495128 -147920114 + MIR SINE MIR 83 212 -50 634 254 27 23 chr6 34495233 34495453 -147919789 + MIR SINE MIR 39 259 -3 194 377 0 0 chr6 34495457 34495534 -147919708 + MIR3 SINE MIR 79 155 -53 315 188 54 80 chr6 34502925 34503037 -147912205 + L1ME LINE L1 707 815 -5255 250 299 103 0 chr6 34504510 34504607 -147910635 - MIR SINE MIR -90 172 66 222 336 46 46 chr6 34506389 34506669 -147908573 + L2 LINE L2 2065 2344 -970 466 273 106 0 chr6 34506676 34506808 -147908434 - L2 LINE L2 -5 3267 3122 2047 132 10 0 chr6 34507112 34507416 -147907826 + AluSg SINE Alu 1 307 -3 740 188 0 15 chr6 34507428 34507561 -147907681 + FLAM_C SINE Alu 3 133 0 240 158 88 18 chr6 34507565 34507622 -147907620 - MER5A DNA MER1_type -128 61 1 533 246 24 62 chr6 34507781 34507992 -147907250 - HAL1 LINE L1 -6 2501 2299 1572 210 35 40 chr6 34508104 34508144 -147907098 + MLT1A2 LTR MaLR 1 40 -334 1621 139 40 33 chr6 34508144 34508445 -147906797 - AluJo SINE Alu -9 303 1 1572 210 35 40 chr6 34508445 34508780 -147906462 + MLT1A2 LTR MaLR 40 374 0 26 30 0 0 chr6 34508825 34508858 -147906384 + AT_rich Low_complexity Low_complexity 1 33 0 2279 100 0 3 chr6 34509146 34509455 -147905787 - AluSx SINE Alu -4 308 1 282 194 0 0 chr6 34509664 34509726 -147905516 + CT-rich Low_complexity Low_complexity 3 64 0 564 185 0 0 chr6 34509759 34509867 -147905375 - L1MB3 LINE L1 0 6183 6076 1945 116 39 0 chr6 34510449 34510756 -147904486 + AluSq SINE Alu 1 313 0 279 297 161 0 chr6 34511002 34511120 -147904122 + L2 LINE L2 3136 3272 0 665 161 12 12 chr6 34511247 34511408 -147903834 + GA-rich Low_complexity Low_complexity 3 163 0 276 100 0 0 chr6 34511427 34511467 -147903775 + (GGGGA)n Simple_repeat Simple_repeat 1 40 0 2353 93 3 0 chr6 34511783 34512095 -147903147 - AluSp SINE Alu 0 313 1 36426 68 9 4 chr6 34514842 34515979 -147899263 + HERVL-A1 LTR ERVL 879 2009 -3645 2310 101 10 0 chr6 34515979 34516276 -147898966 + AluSg SINE Alu 3 302 -8 36426 68 9 4 chr6 34516276 34519890 -147895352 + HERVL-A1 LTR ERVL 2009 5654 0 3121 59 86 0 chr6 34519890 34520299 -147894943 + MLT2A1 LTR ERVL 1 444 0 481 141 0 0 chr6 34520299 34520370 -147894872 - MSTA LTR MaLR -357 71 1 2103 201 62 85 chr6 34521673 34522355 -147892887 - LTR65 LTR ERV1 -3 666 1 209 103 26 0 chr6 34522440 34522471 -147892771 + GA-rich Low_complexity Low_complexity 1 35 -5 2324 92 3 0 chr6 34522471 34522764 -147892478 + AluSq SINE Alu 1 294 -19 532 348 20 25 chr6 34523560 34523804 -147891438 - MIR SINE MIR -5 257 15 2303 98 0 3 chr6 34523809 34524105 -147891137 - AluSg SINE Alu -15 295 1 630 144 32 0 chr6 34524191 34524316 -147890926 + L1MA7 LINE L1 6145 6273 -18 2980 198 163 13 chr6 34524333 34525081 -147890161 - MER21B LTR ERV1 -1 862 3 2151 129 26 0 chr6 34525139 34525441 -147889801 + AluSx SINE Alu 1 310 -2 593 268 32 11 chr6 34525484 34525674 -147889568 - L1ME3 LINE L1 -8 6154 5961 712 186 10 106 chr6 34525695 34525894 -147889348 - AluSg/x SINE Alu -13 299 120 860 136 8 15 chr6 34526003 34526135 -147889107 - AluJb SINE Alu -179 133 3 195 294 88 10 chr6 34526727 34526829 -147888413 - L2 LINE L2 -170 3143 3034 326 317 20 20 chr6 34527182 34527283 -147887959 + L1MEd LINE L1 442 542 -5577 271 256 37 12 chr6 34527484 34527566 -147887676 - MIR SINE MIR -15 247 164 312 248 45 98 chr6 34527837 34527970 -147887272 + L1MEd LINE L1 356 481 -5638 41 0 0 0 chr6 34528138 34528179 -147887063 + AT_rich Low_complexity Low_complexity 1 41 0 551 176 46 28 chr6 34528249 34528357 -147886885 + FRAM SINE Alu 22 131 -45 356 208 13 0 chr6 34528462 34528539 -147886703 + L1MEd LINE L1 758 835 -5284 21 0 0 0 chr6 34528552 34528573 -147886669 + AT_rich Low_complexity Low_complexity 1 21 0 4278 84 19 84 chr6 34528573 34529141 -147886101 - L1MA1 LINE L1 0 6302 5698 2227 107 13 13 chr6 34529141 34529451 -147885791 - AluSg SINE Alu 0 310 1 2420 110 0 0 chr6 34529455 34529765 -147885477 - AluSg SINE Alu 0 310 1 4278 84 19 84 chr6 34529765 34529926 -147885316 - L1MA1 LINE L1 -607 5695 5616 501 308 39 0 chr6 34529936 34530092 -147885150 + MLT1J LTR MaLR 16 177 -334 2123 169 40 26 chr6 34530733 34531159 -147884083 + MSTB1 LTR MaLR 1 432 0 506 265 112 18 chr6 34532660 34532830 -147882412 + MIR SINE MIR 2 187 -75 2135 138 3 0 chr6 34532870 34533174 -147882068 + AluSx SINE Alu 1 305 -7 2247 119 0 0 chr6 34533174 34533547 -147881695 + AluSx SINE Alu 1 373 0 348 259 82 37 chr6 34533835 34533970 -147881272 - MER5A DNA MER1_type -12 177 37 561 258 41 63 chr6 34534222 34534283 -147880959 + MIR SINE MIR 46 107 -155 2309 66 56 0 chr6 34534283 34534571 -147880671 - AluSp SINE Alu -9 304 1 561 258 41 63 chr6 34534571 34534730 -147880512 + MIR SINE MIR 107 261 -1 1580 135 8 35 chr6 34538042 34538302 -147876940 - AluJo SINE Alu -59 253 1 711 224 79 0 chr6 34538509 34538674 -147876568 + LTR47A LTR ERVL 275 452 0 327 333 18 23 chr6 34538691 34538862 -147876380 + LTR47A-int LTR ERVL 15 184 -5159 2049 128 24 0 chr6 34539838 34540126 -147875116 + AluSx SINE Alu 1 295 -17 2482 83 3 0 chr6 34540127 34540428 -147874814 + AluSq SINE Alu 1 302 -11 298 336 50 53 chr6 34540860 34541199 -147874043 + HERVL18 LTR ERVL 1523 1860 -4187 10064 27 0 112 chr6 34541215 34542651 -147872591 - SVA Other Other 0 1386 154 5556 77 3 15 chr6 34542927 34543407 -147871835 - L1PA13 LINE L1 0 6163 5694 2257 101 3 3 chr6 34543407 34543705 -147871537 - AluSp SINE Alu -15 298 1 5556 77 3 15 chr6 34543705 34543975 -147871267 - L1PA13 LINE L1 -469 5694 5422 443 100 0 0 chr6 34543975 34544035 -147871207 - AluSp/q SINE Alu -22 291 232 3482 152 2 3 chr6 34544035 34544735 -147870507 - L1PA13 LINE L1 -736 5438 4740 419 320 32 62 chr6 34544755 34544809 -147870433 + HERVL18 LTR ERVL 2314 2368 -2975 2346 110 0 0 chr6 34544809 34545118 -147870124 - AluSg SINE Alu -1 309 1 419 320 32 62 chr6 34545118 34545404 -147869838 + HERVL18 LTR ERVL 2368 2644 -2699 610 287 26 26 chr6 34545840 34546147 -147869095 + HERVL18 LTR ERVL 3275 3581 -2466 2474 74 7 0 chr6 34546376 34546673 -147868569 + AluSp SINE Alu 1 299 -14 207 0 0 0 chr6 34546673 34546696 -147868546 + (TA)n Simple_repeat Simple_repeat 2 24 0 570 193 126 0 chr6 34546706 34546825 -147868417 + AluJo SINE Alu 3 136 -176 200 315 0 0 chr6 34546978 34547032 -147868210 + L3 LINE CR1 567 620 -957 277 149 0 0 chr6 34547965 34548012 -147867230 + MER4B-int LTR ERV1 5922 5968 -790 1979 133 0 27 chr6 34548089 34548389 -147866853 + AluSx SINE Alu 21 312 0 574 182 0 58 chr6 34548764 34548885 -147866357 + MER4B-int LTR ERV1 5968 6081 -677 4284 128 184 109 chr6 34548936 34550237 -147865005 + pTR5 LTR ERV1 741 2438 0 599 181 54 60 chr6 34550447 34550552 -147864690 + LTR47A LTR ERVL 288 393 -59 2015 138 30 91 chr6 34550552 34550874 -147864368 - LTR47B LTR ERVL 0 443 158 1798 174 0 10 chr6 34550874 34551184 -147864058 + AluJo SINE Alu 1 307 -5 2015 138 30 91 chr6 34551184 34551333 -147863909 - LTR47B LTR ERVL -285 158 1 599 181 54 60 chr6 34551333 34551393 -147863849 + LTR47A LTR ERVL 393 452 0 364 329 79 35 chr6 34551672 34551900 -147863342 + HAL1 LINE L1 1114 1351 -1156 352 115 0 213 chr6 34551900 34551933 -147863309 + L1MB8 LINE L1 6080 6118 -60 2315 93 0 32 chr6 34551933 34552244 -147862998 - AluSx SINE Alu -11 301 1 352 115 0 213 chr6 34552244 34552265 -147862977 + L1MB8 LINE L1 6118 6142 -36 2168 115 0 40 chr6 34552265 34552445 -147862797 - AluSx SINE Alu -2 310 147 2595 11 0 0 chr6 34552445 34552722 -147862520 - AluYb8 SINE Alu -8 310 34 2168 115 0 40 chr6 34552722 34552864 -147862378 - AluSx SINE Alu -165 147 1 352 115 0 213 chr6 34552864 34552930 -147862312 + L1MB8 LINE L1 6142 6175 -3 2200 122 0 10 chr6 34552972 34553267 -147861975 + AluSx SINE Alu 1 292 -20 1761 262 77 95 chr6 34553597 34554521 -147860721 + Charlie2b DNA MER1_type 1 939 -1843 532 245 204 9 chr6 34554521 34554737 -147860505 + MIR SINE MIR 5 262 0 1761 262 77 95 chr6 34554737 34554754 -147860488 + Charlie2b DNA MER1_type 939 955 -1827 2245 116 3 0 chr6 34554754 34555056 -147860186 + AluSx SINE Alu 1 303 -9 1761 262 77 95 chr6 34555056 34555160 -147860082 + Charlie2b DNA MER1_type 955 1029 -1753 445 134 109 17 chr6 34555160 34555279 -147859963 + Charlie2b DNA MER1_type 2297 2426 -356 1180 144 43 0 chr6 34555280 34555488 -147859754 + L1MC1 LINE L1 5920 6136 -197 649 155 19 0 chr6 34555494 34555597 -147859645 + L1MC1 LINE L1 6223 6327 -6 778 224 44 72 chr6 34555677 34555798 -147859444 + Charlie2b DNA MER1_type 2425 2548 -314 884 141 0 30 chr6 34555798 34555933 -147859309 + FLAM_C SINE Alu 2 132 -1 778 224 44 72 chr6 34555933 34556173 -147859069 + Charlie2b DNA MER1_type 2548 2776 -6 737 268 24 6 chr6 34557070 34557234 -147858008 + MIR SINE MIR 11 177 -85 2184 97 27 27 chr6 34557470 34557770 -147857472 - AluSg SINE Alu 0 310 11 927 155 155 8 chr6 34557807 34558058 -147857184 - L1MA9 LINE L1 -5 6307 6020 21 57 0 0 chr6 34558143 34558178 -147857064 + AT_rich Low_complexity Low_complexity 1 35 0 871 136 0 0 chr6 34558182 34558300 -147856942 - FLAM_C SINE Alu -25 118 1 716 251 20 5 chr6 34558306 34558501 -147856741 - L1ME3 LINE L1 -62 6100 5903 4498 109 19 6 chr6 34560133 34560814 -147854428 - L1PB1 LINE L1 -2 6149 5460 398 253 41 89 chr6 34561416 34561562 -147853680 - L2 LINE L2 0 3272 3134 343 285 56 21 chr6 34561682 34561826 -147853416 + L2 LINE L2 1531 1679 -1635 191 307 20 89 chr6 34561829 34561930 -147853312 - MER5A DNA MER1_type -15 174 81 206 250 0 0 chr6 34562022 34562058 -147853184 + C-rich Low_complexity Low_complexity 1 39 -9 2179 117 3 3 chr6 34562058 34562358 -147852884 - AluSx SINE Alu -12 300 1 206 250 0 0 chr6 34562358 34562369 -147852873 + C-rich Low_complexity Low_complexity 38 48 0 898 216 0 0 chr6 34562597 34562759 -147852483 - FRAM SINE Alu -4 162 1 393 236 47 99 chr6 34562813 34563046 -147852196 - HAL1 LINE L1 -204 2303 2083 * 621 260 103 85 chr6 34563035 34563528 -147851714 - HAL1 LINE L1 -356 2151 1650 565 260 52 21 chr6 34563535 34563727 -147851515 - MLT1J1 LTR MaLR -7 439 242 1271 253 44 39 chr6 34563816 34564274 -147850968 - MER74B LTR ERVL -93 529 70 398 276 0 0 chr6 34564364 34564451 -147850791 - MLT1J1 LTR MaLR -324 122 36 2597 241 88 35 chr6 34564469 34565542 -147849700 - HAL1 LINE L1 -851 1656 527 6334 126 189 73 chr6 34565549 34567069 -147848173 + pTR5 LTR ERV1 742 2437 -1 355 285 74 83 chr6 34567082 34567528 -147847714 - HAL1 LINE L1 -1991 516 75 1394 293 150 31 chr6 34567566 34568371 -147846871 + L2 LINE L2 1822 2722 -592 2122 114 0 0 chr6 34568502 34568775 -147846467 + AluSx SINE Alu 1 273 -39 532 309 75 14 chr6 34568891 34569346 -147845896 + L1MEc LINE L1 1279 1882 -4725 726 71 0 10 chr6 34569372 34569471 -147845771 - AluSp SINE Alu -10 303 206 7396 127 68 119 chr6 34569471 34571259 -147843983 + pTR5 LTR ERV1 743 2438 0 1212 109 42 36 chr6 34571262 34571454 -147843788 - AluSp SINE Alu -104 209 17 1228 248 63 76 chr6 34571509 34571866 -147843376 + L1MEc LINE L1 1965 2325 -4282 2032 149 13 0 chr6 34571866 34572167 -147843075 + AluSx SINE Alu 6 310 -2 1228 248 63 76 chr6 34572167 34572265 -147842977 + L1MEc LINE L1 2325 2423 -4184 1656 199 0 30 chr6 34572265 34572566 -147842676 + AluJb SINE Alu 1 292 -20 1228 248 63 76 chr6 34572566 34572886 -147842356 + L1MEc LINE L1 2423 2731 -3876 * 1901 246 107 0 chr6 34572866 34573447 -147841795 + L1MC4 LINE L1 7257 7899 -143 638 301 169 41 chr6 34573744 34573902 -147841340 + L2 LINE L2 2841 2977 -336 2072 92 82 0 chr6 34573902 34574183 -147841059 - AluSp SINE Alu -9 304 1 638 301 169 41 chr6 34574183 34574443 -147840799 + L2 LINE L2 2977 3313 0 2545 70 0 0 chr6 34579271 34579570 -147835672 + AluY SINE Alu 1 299 -12 831 248 81 14 chr6 34579836 34580046 -147835196 + MER58A DNA MER1_type 1 224 0 2130 141 3 0 chr6 34580560 34580894 -147834348 - L1PB1 LINE L1 -5 6146 5812 2053 157 3 0 chr6 34581920 34582226 -147833016 + AluSx SINE Alu 1 307 -5 730 127 18 30 chr6 34582231 34582396 -147832846 + GA-rich Low_complexity Low_complexity 1 163 0 935 226 55 0 chr6 34582653 34582852 -147832390 - MER63A DNA MER1_type 0 210 1 459 364 62 4 chr6 34583051 34583276 -147831966 - MIR SINE MIR -17 245 8 224 207 0 134 chr6 34584488 34584550 -147830692 - MIR SINE MIR -14 248 198 2421 77 0 7 chr6 34584550 34584848 -147830394 + AluSx SINE Alu 1 296 -16 224 207 0 134 chr6 34584848 34584867 -147830375 - MIR SINE MIR -64 198 178 3082 236 49 29 chr6 34584867 34585965 -147829277 + L1ME3 LINE L1 5054 6162 0 2789 290 63 20 chr6 34586004 34587089 -147828153 - ERVL LTR ERVL -1230 4534 3404 323 320 24 8 chr6 34587133 34587258 -147827984 - ERVL LTR ERVL -2379 3275 3149 2036 136 7 23 chr6 34587361 34587670 -147827572 - AluSx SINE Alu -8 304 1 617 349 131 22 chr6 34587864 34588452 -147826790 - ERVL LTR ERVL -3927 1837 1186 1093 234 56 0 chr6 34588526 34588812 -147826430 - MLT1E3 LTR MaLR 0 624 323 2669 176 47 16 chr6 34588863 34589057 -147826185 + MLT1D LTR MaLR 1 188 -317 2215 121 0 0 chr6 34589057 34589355 -147825887 + AluSg SINE Alu 1 298 -12 2669 176 47 16 chr6 34589355 34589650 -147825592 + MLT1D LTR MaLR 188 505 0 340 308 10 10 chr6 34589744 34589848 -147825394 - ERVL LTR ERVL -5061 703 600 358 251 0 19 chr6 34590374 34590499 -147824743 - LTR33A LTR ERVL 0 523 443 697 279 88 38 chr6 34591483 34591504 -147823738 + MIR SINE MIR 11 30 -232 2296 114 0 0 chr6 34591504 34591802 -147823440 + AluSx SINE Alu 1 298 -14 697 279 88 38 chr6 34591802 34592020 -147823222 + MIR SINE MIR 29 262 0 2053 128 24 3 chr6 34592421 34592711 -147822531 + AluJb SINE Alu 1 296 -16 2536 67 0 3 chr6 34592713 34593025 -147822217 + AluY SINE Alu 1 311 0 229 170 21 0 chr6 34593421 34593468 -147821774 + MER63 DNA MER1_type 6 53 -877 * 1341 239 55 0 chr6 34593446 34593789 -147821453 + MER63 DNA MER1_type 699 1060 0 2260 133 0 0 chr6 34594366 34594675 -147820567 - AluSg SINE Alu -1 309 1 341 293 248 8 chr6 34595281 34595523 -147819719 - L3 LINE CR1 -17 1560 1261 2151 107 7 10 chr6 34595967 34596265 -147818977 - AluSx SINE Alu -15 297 1 946 274 17 9 chr6 34596544 34596774 -147818468 + MIR SINE MIR 31 262 0 2144 137 0 10 chr6 34598710 34599016 -147816226 + AluSx SINE Alu 1 303 -9 933 186 76 57 chr6 34599046 34599249 -147815993 + L1ME2 LINE L1 5887 6098 -66 2093 163 0 0 chr6 34599249 34599555 -147815687 + AluJb SINE Alu 1 306 -6 933 186 76 57 chr6 34599555 34599615 -147815627 + L1ME2 LINE L1 6098 6155 -9 26 0 0 0 chr6 34599653 34599679 -147815563 + AT_rich Low_complexity Low_complexity 1 26 0 349 308 204 36 chr6 34599796 34600153 -147815089 - L2 LINE L2 0 3272 2856 1881 154 45 3 chr6 34600414 34600706 -147814536 + AluJo SINE Alu 1 304 -8 1363 272 133 32 chr6 34601150 34601516 -147813726 + L1MD3 LINE L1 5896 6224 -1771 1731 161 50 17 chr6 34601516 34601814 -147813428 + AluJo SINE Alu 1 308 -4 1363 272 133 32 chr6 34601814 34602094 -147813148 + L1MD3 LINE L1 6224 6607 -1388 1586 136 168 0 chr6 34602098 34602407 -147812835 + MER46B DNA MER2_type 1 236 0 1097 248 33 13 chr6 34602408 34602707 -147812535 + L1MC4 LINE L1 6624 6928 -1114 2068 132 6 10 chr6 34602708 34603019 -147812223 + AluSp SINE Alu 1 310 -3 1782 201 0 0 chr6 34603034 34603332 -147811910 + AluJo SINE Alu 1 298 -14 894 186 48 12 chr6 34603345 34603512 -147811730 + FRAM SINE Alu 1 169 -7 1166 156 54 0 chr6 34603512 34603736 -147811506 + L1MD3 LINE L1 6889 7124 -871 1014 130 0 0 chr6 34603759 34603897 -147811345 + AluSp SINE Alu 153 290 -23 587 173 86 0 chr6 34603949 34604088 -147811154 + L1MD3 LINE L1 7845 7995 0 262 183 17 17 chr6 34604111 34604171 -147811071 + L1ME1 LINE L1 6096 6155 -11 1954 135 0 11 chr6 34604287 34604569 -147810673 + AluJb SINE Alu 2 280 -32 810 81 0 0 chr6 34604571 34604682 -147810560 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 2149 103 59 18 chr6 34605018 34605359 -147809883 + THE1A LTR MaLR 1 355 0 1633 195 0 7 chr6 34606445 34606742 -147808500 + AluJo SINE Alu 18 312 0 2235 129 0 0 chr6 34606752 34607055 -147808187 + AluSx SINE Alu 1 303 -9 510 17 0 0 chr6 34607071 34607130 -147808112 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 3338 133 18 6 chr6 34608953 34609442 -147805800 - LTR42 LTR ERVL 0 495 1 2238 104 3 7 chr6 34610294 34610592 -147804650 + AluSg SINE Alu 1 297 -13 2415 71 3 3 chr6 34611278 34611572 -147803670 - AluSq SINE Alu -19 294 1 2259 91 7 0 chr6 34612251 34612536 -147802706 - AluSx SINE Alu -25 287 1 406 244 82 110 chr6 34613138 34613466 -147801776 + MLT1J LTR MaLR 109 427 -84 2015 151 6 6 chr6 34614168 34614503 -147800739 + AluJb SINE Alu 1 335 0 2114 149 0 3 chr6 34614505 34614813 -147800429 + AluJo SINE Alu 1 307 -5 342 238 90 58 chr6 34615718 34615907 -147799335 + L2 LINE L2 3030 3224 -89 2152 112 0 3 chr6 34616013 34616316 -147798926 + AluSx SINE Alu 5 306 -6 625 177 24 8 chr6 34616328 34616452 -147798790 + FLAM_C SINE Alu 3 128 -5 513 266 8 0 chr6 34616467 34616591 -147798651 + MER104 DNA Tc2 53 177 -3 2234 102 0 0 chr6 34616685 34616980 -147798262 - AluSg SINE Alu -15 295 1 233 329 12 12 chr6 34617141 34617226 -147798016 - L2 LINE L2 -179 3093 3009 468 284 43 81 chr6 34617231 34617442 -147797800 - MIR SINE MIR -30 232 30 200 355 84 0 chr6 34617483 34617590 -147797652 - L3b LINE CR1 -289 1294 1179 199 231 0 0 chr6 34617622 34617661 -147797581 - L2 LINE L2 -81 3191 3153 10414 44 5 61 chr6 34618010 34619475 -147795767 - SVA Other Other -1 1385 3 894 71 39 50 chr6 34619493 34619675 -147795567 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chr6 34619675 34619699 -147795543 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 597 251 30 12 chr6 34620610 34620777 -147794465 - MER104 DNA Tc2 -7 173 4 787 153 0 0 chr6 34620809 34620927 -147794315 + FLAM_C SINE Alu 5 122 -21 270 136 0 0 chr6 34620927 34620971 -147794271 + (TA)n Simple_repeat Simple_repeat 1 44 0 284 322 76 17 chr6 34621054 34621172 -147794070 - L2 LINE L2 0 3313 3189 227 264 111 14 chr6 34621241 34621313 -147793929 + MIR3 SINE MIR 5 83 -125 657 69 0 0 chr6 34621480 34621567 -147793675 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 25 31 0 0 chr6 34621596 34621628 -147793614 + AT_rich Low_complexity Low_complexity 1 32 0 1318 196 0 24 chr6 34621628 34621883 -147793359 - AluJb SINE Alu -57 255 7 2060 98 0 33 chr6 34622883 34623188 -147792054 + AluSq SINE Alu 1 295 -18 1528 171 49 3 chr6 34623280 34623584 -147791658 + MER33 DNA MER1_type 1 318 -6 226 289 112 20 chr6 34624228 34624380 -147790862 + L1ME4a LINE L1 5616 5781 -340 1589 106 113 4 chr6 34624488 34624765 -147790477 + AluSx SINE Alu 1 305 0 1705 151 122 82 chr6 34624915 34624950 -147790292 - MLT2D LTR ERVL 0 414 382 228 35 0 0 chr6 34624950 34624979 -147790263 + (TC)n Simple_repeat Simple_repeat 1 29 0 1705 151 122 82 chr6 34624979 34625335 -147789907 - MLT2D LTR ERVL -32 382 7 1722 167 0 17 chr6 34625338 34625631 -147789611 + AluJb SINE Alu 1 288 -24 35 24 0 0 chr6 34625631 34625673 -147789569 + AT_rich Low_complexity Low_complexity 1 42 0 1263 206 0 40 chr6 34626279 34626527 -147788715 - MER8 DNA MER2_type -1 238 1 2030 109 10 3 chr6 34626536 34626839 -147788403 - AluSx SINE Alu -7 305 1 877 203 27 0 chr6 34627150 34627337 -147787905 + AluJo SINE Alu 121 312 0 366 250 20 40 chr6 34627337 34627437 -147787805 + L1ME4a LINE L1 5966 6063 -58 1734 148 13 10 chr6 34627453 34627751 -147787491 - AluJb SINE Alu -13 299 1 1753 166 0 7 chr6 34627755 34628076 -147787166 - AluJb SINE Alu 0 319 1 1993 110 0 26 chr6 34628595 34628904 -147786338 - AluSp SINE Alu -12 301 1 538 281 116 36 chr6 34628922 34629023 -147786219 + HAL1 LINE L1 17 109 -2398 239 0 32 0 chr6 34629023 34629054 -147786188 + (GA)n Simple_repeat Simple_repeat 1 32 0 538 281 116 36 chr6 34629054 34629365 -147785877 + HAL1 LINE L1 109 462 -2045 833 165 0 8 chr6 34629412 34629545 -147785697 + FLAM_C SINE Alu 1 132 -1 199 131 36 36 chr6 34629597 34629681 -147785561 + A-rich Low_complexity Low_complexity 2 85 0 349 374 35 0 chr6 34629690 34629864 -147785378 + HAL1 LINE L1 541 720 -1787 707 214 197 52 chr6 34629907 34630369 -147784873 + LTR50 LTR ERVL 93 744 -51 2179 99 7 0 chr6 34630369 34630671 -147784571 + AluSq SINE Alu 3 306 -7 707 214 197 52 chr6 34630671 34630723 -147784519 + LTR50 LTR ERVL 744 787 -8 251 158 85 85 chr6 34630880 34630962 -147784280 - LTR41 LTR ERVL -41 732 651 594 226 94 19 chr6 34631327 34631486 -147783756 - LTR41 LTR ERVL -594 179 9 404 265 53 69 chr6 34631489 34631561 -147783681 + HAL1 LINE L1 851 923 -1584 1651 167 30 3 chr6 34631561 34631861 -147783381 + AluJb SINE Alu 1 308 -4 404 265 53 69 chr6 34631861 34631977 -147783265 + HAL1 LINE L1 923 1036 -1471 1394 229 99 84 chr6 34631980 34632033 -147783209 + HAL1 LINE L1 1120 1171 -1336 1934 127 33 7 chr6 34632033 34632332 -147782910 + AluSx SINE Alu 1 307 -5 1394 229 99 84 chr6 34632332 34632664 -147782578 + HAL1 LINE L1 1171 1522 -985 1670 157 24 34 chr6 34632664 34632958 -147782284 - AluJo SINE Alu -2 310 20 1394 229 99 84 chr6 34632958 34633260 -147781982 + HAL1 LINE L1 1522 1818 -689 1789 148 23 13 chr6 34633300 34633605 -147781637 + AluSx SINE Alu 1 308 -4 268 283 67 8 chr6 34633834 34633954 -147781288 + LTR67 LTR ERVL 431 557 0 22 56 0 0 chr6 34634148 34634184 -147781058 + AT_rich Low_complexity Low_complexity 1 36 0 1170 99 0 12 chr6 34634236 34634398 -147780844 + AluSq SINE Alu 1 160 -153 523 62 0 0 chr6 34634440 34634504 -147780738 + U6 snRNA snRNA 38 101 -6 1882 126 0 23 chr6 34634521 34634822 -147780420 + AluSq SINE Alu 3 296 -17 2026 97 4 0 chr6 34635807 34636121 -147779121 - AluSq SINE Alu 0 319 5 541 207 37 0 chr6 34636176 34636311 -147778931 - L1MD3 LINE L1 -12 7983 7844 767 332 77 16 chr6 34636896 34637206 -147778036 + MER115 DNA AcHobo 6 334 -359 753 237 6 35 chr6 34637276 34637359 -147777883 + MER115 DNA AcHobo 445 522 -171 679 217 91 98 chr6 34637359 34637581 -147777661 - LTR16A1 LTR ERVL 0 457 235 2062 92 0 7 chr6 34637581 34637893 -147777349 + AluSq SINE Alu 1 310 0 679 217 91 98 chr6 34637893 34638129 -147777113 - LTR16A1 LTR ERVL -222 235 1 753 237 6 35 chr6 34638129 34638218 -147777024 + MER115 DNA AcHobo 522 612 -81 309 226 116 110 chr6 34638778 34638924 -147776318 + L1MC5 LINE L1 7779 7925 -36 921 88 0 22 chr6 34639245 34639381 -147775861 + FLAM_C SINE Alu 1 133 0 711 132 20 123 chr6 34639417 34639486 -147775756 + L1MB4 LINE L1 5765 5839 -341 207 0 0 0 chr6 34639486 34639509 -147775733 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2124 74 0 11 chr6 34639511 34639794 -147775448 - AluSx SINE Alu -31 281 2 711 132 20 123 chr6 34639794 34639925 -147775317 + L1MB4 LINE L1 5840 5947 -233 794 140 0 70 chr6 34639995 34640138 -147775104 + FLAM_C SINE Alu 1 133 0 981 166 5 55 chr6 34640146 34640323 -147774919 + L1MB4 LINE L1 5961 6145 -35 2105 96 0 0 chr6 34640323 34640604 -147774638 + AluSx SINE Alu 1 281 -31 225 0 0 0 chr6 34640608 34640633 -147774609 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 981 166 5 55 chr6 34640633 34640667 -147774575 + L1MB4 LINE L1 6148 6166 -14 371 113 16 0 chr6 34640677 34640739 -147774503 + (CA)n Simple_repeat Simple_repeat 2 64 0 24 0 0 0 chr6 34640791 34640815 -147774427 + AT_rich Low_complexity Low_complexity 1 24 0 716 173 17 23 chr6 34640837 34641010 -147774232 - L1MB4 LINE L1 -233 5947 5776 1855 138 3 0 chr6 34641025 34641307 -147773935 + AluJb SINE Alu 1 283 -29 31 26 0 0 chr6 34641307 34641345 -147773897 + AT_rich Low_complexity Low_complexity 1 38 0 2202 105 0 0 chr6 34641345 34641651 -147773591 - AluSp SINE Alu -7 306 1 303 258 114 74 chr6 34641682 34641980 -147773262 + L1M2 LINE L1 1743 2052 -4797 1174 150 4 53 chr6 34642066 34642313 -147772929 + AluJo SINE Alu 1 235 -77 1897 130 65 6 chr6 34642524 34642848 -147772394 + MER61A LTR ERV1 1 343 0 670 120 96 32 chr6 34643264 34643389 -147771853 + FLAM_C SINE Alu 1 133 0 509 205 86 8 chr6 34643775 34643892 -147771350 + MIR SINE MIR 70 195 -67 1728 115 48 24 chr6 34643894 34644031 -147771211 + AluSx SINE Alu 1 133 -179 2208 96 20 0 chr6 34644031 34644332 -147770910 + AluSx SINE Alu 1 307 -5 1728 115 48 24 chr6 34644332 34644489 -147770753 + AluSx SINE Alu 133 302 -10 513 268 32 25 chr6 34644505 34644662 -147770580 - MIR SINE MIR 0 262 105 405 0 0 0 chr6 34645245 34645290 -147769952 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2013 116 0 0 chr6 34645298 34645575 -147769667 - AluSx SINE Alu -35 277 1 809 104 22 44 chr6 34646418 34646553 -147768689 - MLT1B LTR MaLR -243 147 16 1602 157 11 31 chr6 34646940 34647251 -147767991 + AluJb SINE Alu 1 305 0 359 291 11 84 chr6 34647303 34647482 -147767760 + L1MC4 LINE L1 6765 6930 -1112 1644 168 27 3 chr6 34647482 34647780 -147767462 + AluJb SINE Alu 1 305 -7 381 43 0 0 chr6 34647792 34647839 -147767403 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 225 222 0 0 chr6 34647858 34647903 -147767339 + L1MC4a LINE L1 6848 6892 -916 25 0 0 0 chr6 34648062 34648087 -147767155 + AT_rich Low_complexity Low_complexity 1 25 0 4555 119 17 33 chr6 34648209 34648699 -147766543 + MER50 LTR ERV1 1 477 -257 2315 93 7 0 chr6 34648699 34649009 -147766233 + AluSx SINE Alu 1 312 0 4555 119 17 33 chr6 34649009 34649241 -147766001 + MER50 LTR ERV1 477 711 -23 2168 119 0 0 chr6 34649598 34649910 -147765332 - AluSx SINE Alu 0 312 1 3715 158 11 35 chr6 34649966 34650254 -147764988 + L1MB8 LINE L1 5432 5725 -453 198 103 0 0 chr6 34650254 34650283 -147764959 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3715 158 11 35 chr6 34650283 34650689 -147764553 + L1MB8 LINE L1 5725 6110 -68 2118 88 3 3 chr6 34650703 34651055 -147764187 - AluSp SINE Alu 0 352 1 4077 90 16 20 chr6 34651080 34651274 -147763968 - L1MA2 LINE L1 0 6304 6111 1899 150 0 0 chr6 34651274 34651574 -147763668 + AluSx SINE Alu 1 300 -12 4077 90 16 20 chr6 34651574 34651989 -147763253 - L1MA2 LINE L1 -193 6111 5697 11377 183 74 52 chr6 34651989 34652777 -147762465 - L1M1 LINE L1 -4385 3180 2410 1883 155 0 19 chr6 34652777 34653094 -147762148 + AluSx SINE Alu 1 311 -1 11377 183 74 52 chr6 34653094 34653253 -147761989 - L1M1 LINE L1 -5155 2410 2256 2180 99 0 7 chr6 34653253 34653555 -147761687 - AluSc SINE Alu -9 300 1 11377 183 74 52 chr6 34653555 34654310 -147760932 - L1M1 LINE L1 -5309 2256 1519 1956 130 7 0 chr6 34654310 34654609 -147760633 + AluSx SINE Alu 1 301 -11 11377 183 74 52 chr6 34654609 34655403 -147759839 - L1M1 LINE L1 -6046 1519 506 800 182 0 0 chr6 34655403 34655535 -147759707 - FLAM_C SINE Alu -1 132 1 11377 183 74 52 chr6 34655535 34655979 -147759263 - L1M1 LINE L1 -7059 506 73 1682 177 20 0 chr6 34655980 34656274 -147758968 + AluJb SINE Alu 1 300 -12 2147 102 3 0 chr6 34656297 34656590 -147758652 + AluSq SINE Alu 1 294 -19 2248 97 0 0 chr6 34656650 34656948 -147758294 - AluSq SINE Alu -15 298 1 2224 60 4 4 chr6 34657004 34657332 -147757910 + AluY SINE Alu 1 328 0 2192 88 3 3 chr6 34657825 34658132 -147757110 + AluSc SINE Alu 1 307 -2 815 111 8 8 chr6 34658282 34658420 -147756822 + FLAM_C SINE Alu 1 138 0 437 228 41 76 chr6 34658847 34659033 -147756209 - MIR SINE MIR -27 181 33 1999 109 4 0 chr6 34659204 34659534 -147755708 - AluSq SINE Alu 0 341 11 231 36 0 0 chr6 34659534 34659562 -147755680 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 829 190 19 0 chr6 34659564 34659722 -147755520 - AluJ SINE Alu -38 274 114 1823 118 74 0 chr6 34659747 34660017 -147755225 - AluSg SINE Alu -20 290 1 835 138 7 22 chr6 34660046 34660184 -147755058 - AluJ SINE Alu -174 138 3 339 324 58 12 chr6 34660343 34660516 -147754726 + MIR SINE MIR 82 262 0 411 308 79 18 chr6 34660550 34660655 -147754587 + MIR SINE MIR 30 149 -113 1976 78 44 34 chr6 34660655 34660948 -147754294 - AluSx SINE Alu -16 296 1 411 308 79 18 chr6 34660948 34661017 -147754225 + MIR SINE MIR 149 212 -50 463 240 0 0 chr6 34661200 34661300 -147753942 - L2 LINE L2 -25 3288 3189 1869 208 48 56 chr6 34664525 34665024 -147750218 - MLT1D LTR MaLR -9 496 2 225 188 71 35 chr6 34665155 34665240 -147750002 + L1MC5 LINE L1 7839 7926 -35 210 37 0 0 chr6 34666354 34666381 -147748861 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 764 123 35 0 chr6 34669242 34669356 -147745886 + FLAM_C SINE Alu 1 118 -25 27 0 0 0 chr6 34669361 34669388 -147745854 + AT_rich Low_complexity Low_complexity 1 27 0 258 264 57 57 chr6 34670139 34670245 -147744997 + MIR SINE MIR 95 200 -62 2076 136 13 3 chr6 34670260 34670569 -147744673 - AluSq SINE Alu -1 312 1 686 281 23 65 chr6 34670858 34671042 -147744200 + MIR SINE MIR 14 185 -77 2019 126 3 26 chr6 34671042 34671352 -147743890 + AluSx SINE Alu 1 303 -9 686 281 23 65 chr6 34671352 34671427 -147743815 + MIR SINE MIR 185 262 0 375 333 111 5 chr6 34671469 34671711 -147743531 - MIR SINE MIR 0 262 1 439 245 182 0 chr6 34673212 34673355 -147741887 + MER3 DNA MER1_type 27 195 -14 460 321 73 24 chr6 34673493 34673658 -147741584 + MIR SINE MIR 20 192 -70 2218 92 0 7 chr6 34673920 34674215 -147741027 + AluSq SINE Alu 1 293 -20 248 93 23 0 chr6 34675633 34675676 -147739566 + Alu SINE Alu 16 59 -116 495 338 68 32 chr6 34675737 34675956 -147739286 - MIR SINE MIR -8 254 28 2114 110 7 0 chr6 34676113 34676404 -147738838 + AluSx SINE Alu 1 293 -19 432 0 0 0 chr6 34678987 34679035 -147736207 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1665 86 0 0 chr6 34679056 34679265 -147735977 + AluSq SINE Alu 82 290 -23 334 295 6 66 chr6 34679290 34679456 -147735786 + L2 LINE L2 3095 3250 -63 234 291 105 12 chr6 34679836 34679922 -147735320 - MIR3 SINE MIR -112 96 3 286 303 97 35 chr6 34680288 34680433 -147734809 + L2 LINE L2 3119 3272 0 296 341 40 40 chr6 34681027 34681203 -147734039 + MIR SINE MIR 32 207 -55 198 374 74 12 chr6 34681146 34681309 -147733933 - L2 LINE L2 -20 3293 3121 * 1045 142 0 12 chr6 34681384 34681546 -147733696 + AluJb SINE Alu 134 293 -19 180 0 0 0 chr6 34681546 34681566 -147733676 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1506 158 57 57 chr6 34681705 34681854 -147733388 - AluJo SINE Alu -14 298 150 2177 59 42 7 chr6 34681854 34682142 -147733100 - AluY SINE Alu -12 299 2 1506 158 57 57 chr6 34682142 34682290 -147732952 - AluJo SINE Alu -161 151 1 812 175 7 14 chr6 34682291 34682434 -147732808 - FLAM_A SINE Alu 0 142 1 240 250 0 0 chr6 34682438 34682494 -147732748 - FAM SINE Alu -2 173 118 2225 99 0 19 chr6 34682754 34683067 -147732175 + AluSg SINE Alu 1 307 -3 515 243 112 56 chr6 34683073 34683287 -147731955 + MIR SINE MIR 6 231 -31 328 175 16 0 chr6 34683332 34683395 -147731847 - LTR16C LTR ERVL -2 489 426 1626 150 62 0 chr6 34683408 34683682 -147731560 + AluJb SINE Alu 1 291 -21 2166 108 0 3 chr6 34683684 34683972 -147731270 + AluSx SINE Alu 1 287 -25 234 0 0 0 chr6 34683975 34684001 -147731241 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1881 169 3 0 chr6 34684012 34684307 -147730935 + AluJo SINE Alu 1 296 -16 214 311 220 10 chr6 34684631 34684840 -147730402 - L2 LINE L2 -88 3184 2932 21 36 0 0 chr6 34685208 34685236 -147730006 + AT_rich Low_complexity Low_complexity 1 28 0 2244 95 0 7 chr6 34685418 34685722 -147729520 - AluSx SINE Alu -7 305 4 2444 60 0 10 chr6 34685735 34686049 -147729193 - AluY SINE Alu 0 311 1 308 183 29 203 chr6 34686225 34686266 -147728976 - Charlie2 DNA MER1_type -28 2834 2788 1809 157 7 3 chr6 34686266 34686560 -147728682 - AluJb SINE Alu -17 295 1 308 183 29 203 chr6 34686560 34686665 -147728577 - Charlie2 DNA MER1_type -74 2788 2765 1764 105 82 8 chr6 34686665 34686961 -147728281 - AluSx SINE Alu 0 316 1 308 183 29 203 chr6 34686961 34687122 -147728120 - Charlie2 DNA MER1_type -97 2765 2578 1632 154 19 68 chr6 34687199 34687524 -147727718 + AluJb SINE Alu 1 309 -3 2059 137 0 13 chr6 34687549 34687864 -147727378 + AluSx SINE Alu 1 311 -1 363 237 0 0 chr6 34687988 34688064 -147727178 - Charlie2 DNA MER1_type -2681 101 26 2339 78 7 0 chr6 34688313 34688620 -147726622 + AluSg SINE Alu 1 309 -1 2433 52 10 3 chr6 34688620 34688927 -147726315 + AluY SINE Alu 1 310 -1 197 0 71 0 chr6 34689797 34689825 -147725417 + (CCCCAG)n Simple_repeat Simple_repeat 1 30 0 218 329 185 41 chr6 34691414 34691776 -147723466 + L2 LINE L2 2301 2714 -600 2274 73 7 20 chr6 34691780 34692080 -147723162 + AluSp SINE Alu 1 296 -17 406 157 129 0 chr6 34692097 34692167 -147723075 + AluJ/FLAM SINE Alu 1 79 -233 1351 146 39 39 chr6 34692520 34692774 -147722468 - AluJo SINE Alu -32 280 27 962 63 24 0 chr6 34692774 34692900 -147722342 + AluSp/q SINE Alu 167 295 -18 2177 115 3 3 chr6 34692948 34693260 -147721982 - AluSx SINE Alu 0 312 1 212 247 253 47 chr6 34693396 34693566 -147721676 + L2 LINE L2 3001 3205 -108 433 285 126 61 chr6 34695082 34695221 -147720021 + L1MC4 LINE L1 7716 7845 -197 2078 113 3 0 chr6 34695221 34695514 -147719728 + AluSc SINE Alu 6 299 -10 433 285 126 61 chr6 34695514 34695637 -147719605 + L1MC4 LINE L1 7845 7995 -47 1760 164 0 3 chr6 34695639 34695932 -147719310 - AluSx SINE Alu -20 292 1 318 148 16 0 chr6 34695932 34695993 -147719249 + L1ME3A LINE L1 6043 6104 -66 2051 119 7 3 chr6 34697501 34697803 -147717439 + AluSx SINE Alu 1 303 -9 2291 82 0 3 chr6 34698556 34698850 -147716392 + AluSg SINE Alu 1 293 -17 2086 94 7 42 chr6 34699109 34699418 -147715824 + AluSx SINE Alu 1 298 -14 2335 94 0 3 chr6 34700300 34700607 -147714635 + AluSx SINE Alu 7 312 0 255 217 0 58 chr6 34700754 34700823 -147714419 + L2 LINE L2 3015 3079 -234 1675 152 3 21 chr6 34700853 34701142 -147714100 - AluJb SINE Alu -4 308 25 673 94 0 0 chr6 34701146 34701231 -147714011 + AluS SINE Alu 3 87 -226 383 268 256 6 chr6 34701262 34701426 -147713816 + L2 LINE L2 3106 3310 -3 261 306 174 26 chr6 34702612 34702877 -147712365 + L2 LINE L2 2386 2689 -625 327 300 110 20 chr6 34703026 34703226 -147712016 + L2 LINE L2 3024 3241 -72 189 313 8 90 chr6 34703301 34703435 -147711807 + L2 LINE L2 2624 2746 -568 2294 56 49 0 chr6 34703438 34703726 -147711516 + AluY SINE Alu 1 302 -9 2196 125 0 0 chr6 34703760 34704064 -147711178 - AluSx SINE Alu -8 304 1 873 118 0 8 chr6 34704082 34704201 -147711041 - FLAM_C SINE Alu -15 118 1 1667 120 80 11 chr6 34704423 34704699 -147710543 - AluSx SINE Alu -17 295 1 573 292 84 34 chr6 34704704 34705000 -147710242 - L1M LINE L1 -813 5333 5039 2239 108 0 0 chr6 34705001 34705296 -147709946 - AluSg SINE Alu -13 297 3 225 295 49 98 chr6 34705318 34705501 -147709741 + L2 LINE L2 3024 3197 -75 21 0 0 0 chr6 34706564 34706585 -147708657 + AT_rich Low_complexity Low_complexity 1 21 0 2463 66 0 0 chr6 34706741 34707043 -147708199 + AluY SINE Alu 1 302 -9 1603 195 20 0 chr6 34707210 34707507 -147707735 - AluJo SINE Alu -9 303 1 326 313 61 9 chr6 34707539 34707654 -147707588 - MIR3 SINE MIR -84 124 4 467 152 254 22 chr6 34711623 34711761 -147703481 - MIR SINE MIR -1 261 92 856 112 8 8 chr6 34711762 34711887 -147703355 + AluJb SINE Alu 1 125 -187 22 0 0 0 chr6 34711887 34711909 -147703333 + AT_rich Low_complexity Low_complexity 1 22 0 2214 92 0 16 chr6 34711911 34712215 -147703027 + AluSg SINE Alu 3 301 -9 302 188 0 0 chr6 34712216 34712264 -147702978 - MIR SINE MIR -163 99 52 2273 104 7 0 chr6 34712311 34712619 -147702623 + AluSg SINE Alu 1 310 0 183 245 61 0 chr6 34715628 34715677 -147699565 + MIR SINE MIR 45 96 -112 2513 77 0 0 chr6 34717824 34718121 -147697121 + AluSg SINE Alu 2 298 -12 507 115 48 29 chr6 34718559 34718663 -147696579 + MER50 LTR ERV1 499 604 -130 667 164 0 9 chr6 34718691 34718801 -147696441 + FLAM_C SINE Alu 2 110 -33 25 0 0 0 chr6 34718832 34718857 -147696385 + AT_rich Low_complexity Low_complexity 1 25 0 2190 130 3 0 chr6 34718875 34719175 -147696067 + AluSx SINE Alu 3 303 -9 1988 118 33 0 chr6 34719409 34719681 -147695561 - AluSx SINE Alu -31 281 1 2110 77 19 0 chr6 34719686 34719947 -147695295 - AluSp SINE Alu -14 299 34 389 234 311 22 chr6 34719958 34720180 -147695062 - L2 LINE L2 -609 2705 2420 355 238 234 13 chr6 34720181 34720408 -147694834 - L2 LINE L2 -1042 2272 1996 258 266 73 16 chr6 34720578 34720702 -147694540 + MIR SINE MIR 131 261 -1 1695 189 7 7 chr6 34722338 34722640 -147692602 - AluJo SINE Alu -10 302 1 438 211 114 63 chr6 34725748 34725923 -147689319 + MIR3 SINE MIR 7 190 -18 1598 115 0 100 chr6 34726157 34726436 -147688806 + AluSx SINE Alu 1 251 -61 365 310 65 32 chr6 34727682 34727898 -147687344 + MIR SINE MIR 40 262 0 2264 73 7 0 chr6 34728113 34728385 -147686857 + AluSq SINE Alu 1 274 -39 2538 72 0 7 chr6 34728493 34728799 -147686443 - AluY SINE Alu -7 304 1 327 257 152 86 chr6 34729515 34729772 -147685470 + L2 LINE L2 2175 2448 -866 402 325 103 34 chr6 34730270 34730648 -147684594 + L2 LINE L2 2458 2861 -453 1407 101 0 11 chr6 34731071 34731259 -147683983 + AluSg/x SINE Alu 101 286 -26 300 186 0 0 chr6 34731259 34731318 -147683924 + (TA)n Simple_repeat Simple_repeat 1 59 0 1642 163 7 24 chr6 34731354 34731642 -147683600 - AluJb SINE Alu -14 298 16 2417 47 0 20 chr6 34732399 34732696 -147682546 + AluY SINE Alu 1 291 -20 1666 75 133 61 chr6 34732708 34732986 -147682256 + AluSx SINE Alu 1 298 -14 1445 92 0 5 chr6 34733060 34733282 -147681960 - AluSq SINE Alu 0 327 107 321 26 0 0 chr6 34733287 34733325 -147681917 + (TA)n Simple_repeat Simple_repeat 1 38 0 3710 128 28 0 chr6 34733325 34733896 -147681346 - Harlequin LTR ERV1 -424 6472 5886 * 14787 81 13 3 chr6 34733890 34735907 -147679335 - Harlequin LTR ERV1 -1509 5387 3352 6627 41 39 9 chr6 34735906 34736880 -147678362 - Harlequin LTR ERV1 -4322 2574 1572 * 6224 70 37 16 chr6 34736865 34737749 -147677493 - Harlequin LTR ERV1 -5993 903 1 * 3764 52 23 0 chr6 34737749 34738228 -147677014 - LTR2B LTR ERV1 0 490 1 450 207 0 5 chr6 34738246 34738353 -147676889 + L1PA15 LINE L1 6025 6129 -36 2357 113 0 0 chr6 34738363 34738672 -147676570 + AluSx SINE Alu 1 309 -3 2221 86 31 7 chr6 34738870 34739162 -147676080 - AluSx SINE Alu -13 299 1 530 167 0 0 chr6 34739166 34739268 -147675974 - L1PA15 LINE L1 -13 6152 6051 2450 71 0 3 chr6 34739536 34739830 -147675412 - AluY SINE Alu -16 295 3 2155 123 3 26 chr6 34739843 34740152 -147675090 - AluY SINE Alu -9 302 1 1078 109 0 27 chr6 34740152 34740288 -147674954 - AluSq/x SINE Alu -179 134 1 2231 109 3 0 chr6 34740309 34740602 -147674640 - AluSp SINE Alu -19 294 1 77 17 0 26 chr6 34740604 34740672 -147674570 + AT_rich Low_complexity Low_complexity 1 69 -45 1218 78 6 0 chr6 34740672 34740839 -147674403 - L1PA8 LINE L1 -11 6161 5994 1907 144 35 3 chr6 34740841 34741125 -147674117 - AluSx SINE Alu -18 294 2 77 17 0 26 chr6 34741125 34741170 -147674072 + AT_rich Low_complexity Low_complexity 70 114 0 926 231 125 3 chr6 34741170 34741351 -147673891 - L1ME2 LINE L1 -2 6162 6004 2276 118 3 0 chr6 34741351 34741657 -147673585 - AluSx SINE Alu -5 307 1 926 231 125 3 chr6 34741657 34741786 -147673456 - L1ME2 LINE L1 -160 6004 5814 1183 124 26 26 chr6 34741795 34741988 -147673254 - AluSc SINE Alu -15 294 102 913 103 0 0 chr6 34741988 34742114 -147673128 + AluSp/q SINE Alu 166 291 -22 541 257 158 0 chr6 34742114 34742266 -147672976 + FRAM SINE Alu 1 40 0 2044 116 14 3 chr6 34742362 34742654 -147672588 - AluSx SINE Alu -14 298 4 2363 90 0 7 chr6 34742699 34742999 -147672243 - AluSg SINE Alu -12 298 1 2571 61 0 0 chr6 34743173 34743470 -147671772 + AluY SINE Alu 1 297 -14 1877 149 20 23 chr6 34743493 34743794 -147671448 - AluSx SINE Alu -12 300 1 2056 129 27 0 chr6 34743816 34744110 -147671132 - AluSq SINE Alu -11 302 1 2118 127 3 10 chr6 34744267 34744574 -147670668 - AluSx SINE Alu -7 305 1 1014 159 0 6 chr6 34744574 34744737 -147670505 - AluSg/x SINE Alu -6 304 143 510 169 8 85 chr6 34745188 34745263 -147669979 + MER5A DNA MER1_type 1 65 -124 2379 82 0 3 chr6 34745263 34745579 -147669663 + AluSq SINE Alu 1 313 0 510 169 8 85 chr6 34745579 34745621 -147669621 + MER5A DNA MER1_type 65 109 -80 386 338 43 53 chr6 34745868 34746149 -147669093 + L2 LINE L2 2994 3271 -1 24 53 0 0 chr6 34746658 34746696 -147668546 + AT_rich Low_complexity Low_complexity 1 38 0 3899 138 17 124 chr6 34746732 34748276 -147666966 + pTR5 LTR ERV1 744 2606 0 649 119 10 0 chr6 34748317 34748418 -147666824 - FRAM SINE Alu -34 142 41 2193 92 17 0 chr6 34748680 34748973 -147666269 - AluSx SINE Alu -14 298 1 2211 107 7 7 chr6 34749877 34750187 -147665055 - AluSx SINE Alu -2 310 1 1820 151 10 16 chr6 34750219 34750523 -147664719 + AluJb SINE Alu 1 302 -10 216 97 0 0 chr6 34750525 34750556 -147664686 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 2221 107 4 0 chr6 34750646 34750927 -147664315 + AluSq SINE Alu 14 295 -18 1179 224 28 50 chr6 34751633 34751955 -147663287 + MLT1A2 LTR MaLR 56 370 -4 423 192 98 62 chr6 34752033 34752226 -147663016 - L2 LINE L2 0 3313 3114 2214 108 0 0 chr6 34752243 34752520 -147662722 + AluSg SINE Alu 2 278 -32 195 42 0 0 chr6 34752529 34752553 -147662689 + (TA)n Simple_repeat Simple_repeat 2 25 0 1049 259 108 9 chr6 34752557 34753028 -147662214 - MLT1G1 LTR MaLR -57 498 15 344 265 70 32 chr6 34753035 34753073 -147662169 - L2 LINE L2 -163 3150 3115 2402 103 0 3 chr6 34753073 34753383 -147661859 + AluSc SINE Alu 1 309 0 344 265 70 32 chr6 34753383 34753529 -147661713 - L2 LINE L2 -198 3115 2959 3684 130 18 12 chr6 34754900 34755498 -147659744 + LTR43 LTR ERV1 1 602 0 42117 1 0 8 chr6 34755498 34755840 -147659402 + LTR43-int LTR ERV1 1 344 -4454 2377 99 0 3 chr6 34755840 34756143 -147659099 - AluSg SINE Alu -7 303 2 42117 1 0 8 chr6 34756143 34756784 -147658458 + LTR43-int LTR ERV1 344 989 -3809 2292 94 7 0 chr6 34756784 34757070 -147658172 + AluSp SINE Alu 5 292 -21 42117 1 0 8 chr6 34757070 34757685 -147657557 + LTR43-int LTR ERV1 989 1608 -3190 2282 110 0 7 chr6 34757685 34757985 -147657257 - AluSx SINE Alu -14 298 1 42117 1 0 8 chr6 34757985 34758272 -147656970 + LTR43-int LTR ERV1 1608 1896 -2902 2506 85 0 0 chr6 34758272 34758578 -147656664 + AluSg SINE Alu 5 310 0 42117 1 0 8 chr6 34758578 34758720 -147656522 + LTR43-int LTR ERV1 1896 2038 -2760 2420 80 0 0 chr6 34758720 34759009 -147656233 + AluSg SINE Alu 1 289 -21 42117 1 0 8 chr6 34759009 34759074 -147656168 + LTR43-int LTR ERV1 2038 2102 -2696 2140 108 4 0 chr6 34759074 34759351 -147655891 + AluSx SINE Alu 34 311 -1 42117 1 0 8 chr6 34759351 34761188 -147654054 + LTR43-int LTR ERV1 2102 3953 -845 2450 89 7 0 chr6 34761188 34761490 -147653752 + AluSc SINE Alu 1 304 -5 42117 1 0 8 chr6 34761490 34762114 -147653128 + LTR43-int LTR ERV1 3953 4519 -279 1467 110 9 37 chr6 34762114 34762332 -147652910 + AluSg/x SINE Alu 83 294 -16 42117 1 0 8 chr6 34762332 34762610 -147652632 + LTR43-int LTR ERV1 4519 4798 0 4068 102 3 26 chr6 34762610 34763226 -147652016 + LTR43 LTR ERV1 1 602 0 764 163 20 14 chr6 34763255 34763402 -147651840 + L1MC3 LINE L1 6698 6845 -940 1703 90 0 5 chr6 34763402 34763613 -147651629 + AluSg SINE Alu 3 212 -98 887 188 39 51 chr6 34763620 34763749 -147651493 + L1M4 LINE L1 4531 4657 -1489 2510 69 26 0 chr6 34763749 34764053 -147651189 + AluSq SINE Alu 1 312 -1 887 188 39 51 chr6 34764053 34764179 -147651063 + L1M4 LINE L1 4657 4783 -1363 * 3072 141 65 95 chr6 34764169 34764331 -147650911 + L1MA8 LINE L1 5552 5717 -574 561 250 8 0 chr6 34764331 34764463 -147650779 - FLAM_A SINE Alu 0 133 1 3072 141 65 95 chr6 34764463 34764802 -147650440 + L1MA8 LINE L1 5717 6065 -226 2185 98 9 35 chr6 34764802 34765118 -147650124 + AluSx SINE Alu 1 308 -4 1808 139 41 8 chr6 34765123 34765390 -147649852 - AluSx SINE Alu -36 276 1 3072 141 65 95 chr6 34765390 34765641 -147649601 + L1MA8 LINE L1 6069 6288 -3 785 157 79 6 chr6 34765653 34765831 -147649411 + L1M4 LINE L1 4762 4952 -1194 861 231 43 22 chr6 34766248 34766554 -147648688 - MSTD LTR MaLR -8 388 16 4144 87 2 0 chr6 34766554 34767107 -147648135 + MER41A LTR ERV1 1 554 0 2203 100 30 3 chr6 34767133 34767432 -147647810 - AluSp SINE Alu -6 307 1 2504 124 136 69 chr6 34767732 34768239 -147647003 + LTR10B LTR ERV1 1 541 -6 2175 129 0 3 chr6 34768265 34768576 -147646666 - AluSg SINE Alu 0 310 1 2034 91 94 0 chr6 34768578 34768854 -147646388 - AluSq SINE Alu -11 302 1 1372 183 88 111 chr6 34768891 34769367 -147645875 - MER4C LTR ERV1 0 465 1 925 229 10 0 chr6 34769371 34769572 -147645670 - MER4C-int LTR ERV1 -1 6597 6395 262 246 33 57 chr6 34769601 34769723 -147645519 - MER4C-int LTR ERV1 -170 6428 6310 394 228 150 0 chr6 34769727 34769854 -147645388 - MER4C LTR ERV1 -205 260 158 5693 116 45 42 chr6 34769904 34770292 -147644950 - LTR49-int LTR ERV1 -520 5811 5426 2174 102 7 3 chr6 34770292 34770586 -147644656 - AluSp SINE Alu -18 295 1 5693 116 45 42 chr6 34770586 34771042 -147644200 - LTR49-int LTR ERV1 -905 5426 4961 2332 102 0 0 chr6 34771042 34771345 -147643897 + AluSg SINE Alu 1 303 -7 5693 116 45 42 chr6 34771345 34771536 -147643706 - LTR49-int LTR ERV1 -1370 4961 4772 2107 104 7 7 chr6 34771537 34771844 -147643398 + AluSg SINE Alu 1 307 0 838 184 18 64 chr6 34771846 34772064 -147643178 - LTR49-int LTR ERV1 -1969 2911 2704 1824 110 4 4 chr6 34772072 34772318 -147642924 - AluSc SINE Alu -63 246 1 1080 215 85 97 chr6 34772318 34772878 -147642364 - LTR49-int LTR ERV1 -2614 2266 1700 2485 93 0 0 chr6 34772878 34773188 -147642054 + AluSg SINE Alu 1 310 0 1080 215 85 97 chr6 34773188 34773477 -147641765 - LTR49-int LTR ERV1 -3180 1700 1001 2295 74 25 3 chr6 34773555 34773839 -147641403 - AluSc SINE Alu -19 290 1 620 148 87 54 chr6 34773851 34774000 -147641242 - LTR49-int LTR ERV1 -5184 1147 994 258 156 22 0 chr6 34774017 34774062 -147641180 - LTR49 LTR ERV1 -287 308 263 3348 78 41 0 chr6 34774680 34775115 -147640127 + MLT2A2 LTR ERVL 1 453 0 2227 104 3 0 chr6 34775302 34775600 -147639642 - AluSp SINE Alu -14 299 1 289 348 0 0 chr6 34776463 34776552 -147638690 - MER82 DNA MER2_type -61 592 504 2409 74 14 0 chr6 34776893 34777189 -147638053 - AluY SINE Alu -11 300 1 8673 219 48 25 chr6 34777189 34778036 -147637206 - HERV3 LTR ERV1 -1084 7342 6516 2592 40 0 13 chr6 34778036 34778338 -147636904 - AluY SINE Alu -13 298 1 8673 219 48 25 chr6 34778338 34779318 -147635924 - HERV3 LTR ERV1 -1910 6516 5469 1143 178 12 89 chr6 34779319 34779440 -147635802 - LTR61 LTR ERV1 -329 266 174 2348 90 0 0 chr6 34779440 34779729 -147635513 + AluY SINE Alu 1 289 -22 1143 178 12 89 chr6 34779729 34779865 -147635377 - LTR61 LTR ERV1 -421 174 29 183 42 0 0 chr6 34779865 34779889 -147635353 + (TTA)n Simple_repeat Simple_repeat 1 24 0 957 311 44 21 chr6 34780020 34780454 -147634788 + LTR33 LTR ERVL 10 453 -68 2291 92 7 0 chr6 34780457 34780751 -147634491 + AluSp SINE Alu 1 296 -17 225 91 0 0 chr6 34780752 34780785 -147634457 + LTR33 LTR ERVL 485 517 -4 2241 99 17 3 chr6 34781478 34781780 -147633462 - AluSq SINE Alu -7 306 1 553 130 98 0 chr6 34782173 34782296 -147632946 + L1MB7 LINE L1 6037 6171 -13 537 267 144 25 chr6 34782309 34782750 -147632492 + L1ME3A LINE L1 5434 5937 -233 561 234 22 54 chr6 34783217 34783401 -147631841 + MER3 DNA MER1_type 4 181 -28 694 132 9 9 chr6 34783418 34783532 -147631710 - MER9 LTR ERVK 0 511 398 3674 96 8 6 chr6 34783534 34784047 -147631195 - HERVK9 LTR ERVK -821 5095 4582 1842 70 4 0 chr6 34784046 34784276 -147630966 - HERVK9 LTR ERVK -1975 3941 3711 * 20385 78 4 9 chr6 34784277 34787022 -147628220 - HERVK9 LTR ERVK -3131 2785 1 3674 113 0 6 chr6 34787022 34787536 -147627706 - MER9 LTR ERVK 0 511 1 1736 104 0 0 chr6 34787845 34788126 -147627116 - AluSg/x SINE Alu 0 346 66 2235 98 34 0 chr6 34788352 34788649 -147626593 + AluSx SINE Alu 1 307 -5 952 161 6 12 chr6 34788711 34788872 -147626370 - FRAM SINE Alu -17 159 1 23 0 0 0 chr6 34789202 34789225 -147626017 + AT_rich Low_complexity Low_complexity 1 23 0 2092 137 7 7 chr6 34790960 34791290 -147623952 + AluSx SINE Alu 1 312 0 2018 144 0 7 chr6 34791576 34791874 -147623368 - AluSq SINE Alu -17 296 1 2243 154 21 5 chr6 34792287 34792671 -147622571 - MLT1B LTR MaLR 0 390 1 648 70 0 0 chr6 34792696 34792782 -147622460 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2280 120 0 0 chr6 34792794 34793102 -147622140 - AluSx SINE Alu -4 308 1 597 286 40 0 chr6 34794142 34794317 -147620925 + MLT1G1 LTR MaLR 11 192 -403 1681 186 73 13 chr6 34794442 34794921 -147620321 - L1M4 LINE L1 -3828 3020 2513 1373 243 48 6 chr6 34794927 34795260 -147619982 - MLT2C2 LTR ERVL -116 348 2 3755 211 19 34 chr6 34795263 34795695 -147619547 - ERVL-C2 LTR ERVL -7 5757 5342 1572 190 11 18 chr6 34795695 34796013 -147619229 - AluJb SINE Alu 0 316 1 3755 211 19 34 chr6 34796013 34796460 -147618782 - ERVL-C2 LTR ERVL -422 5342 4890 16052 203 23 20 chr6 34796462 34800234 -147615008 + L1PA12 LINE L1 1328 5902 -1682 684 265 132 0 chr6 34800233 34800422 -147614820 - L1M4 LINE L1 -5705 1144 931 * 443 172 54 0 chr6 34800614 34800707 -147614535 + L1MA7 LINE L1 6188 6285 -6 400 327 65 5 chr6 34800720 34800919 -147614323 - L1MEc LINE L1 -4763 1633 1423 1003 255 19 15 chr6 34801078 34801341 -147613901 + MLT2D LTR ERVL 1 264 -150 1423 224 6 54 chr6 34801343 34801692 -147613550 + MER21B-int LTR ERV1 2341 2672 -1519 765 168 22 0 chr6 34801692 34801829 -147613413 + MSTA LTR MaLR 1 140 -288 435 200 0 0 chr6 34801832 34801907 -147613335 + MER21B-int LTR ERV1 2665 2739 -1452 373 287 70 0 chr6 34801913 34802042 -147613200 + FRAM SINE Alu 16 153 -13 1811 248 50 48 chr6 34802042 34802373 -147612869 + MER21B-int LTR ERV1 2728 3062 -1129 4746 164 13 3 chr6 34802373 34803148 -147612094 - LTR39 LTR ERV1 0 783 1 1811 248 50 48 chr6 34803148 34803400 -147611842 + MER21B-int LTR ERV1 3062 3312 -879 2493 200 39 16 chr6 34803499 34804063 -147611179 + MER21B-int LTR ERV1 3463 4039 -152 41356 71 5 7 chr6 34804078 34804452 -147610790 - L1PA6 LINE L1 -4 6150 5777 2372 92 3 3 chr6 34804452 34804758 -147610484 - AluY SINE Alu -5 306 1 41356 71 5 7 chr6 34804758 34810534 -147604708 - L1PA6 LINE L1 -377 5777 11 1566 217 3 3 chr6 34810637 34810932 -147604310 + AluJo SINE Alu 1 295 -17 1802 247 4 43 chr6 34810990 34811455 -147603787 + MER21B LTR ERV1 19 465 -398 598 273 132 41 chr6 34811456 34811775 -147603467 + MSTD LTR MaLR 1 348 -17 1876 149 8 62 chr6 34811786 34812142 -147603100 + MER1B DNA MER1_type 1 337 0 1526 173 17 88 chr6 34812178 34812769 -147602473 + MER4A LTR ERV1 1 465 0 914 249 51 33 chr6 34812782 34813055 -147602187 + MER21B LTR ERV1 505 782 -81 4804 55 12 14 chr6 34813086 34814121 -147601121 - MER11A LTR ERVK 0 1266 1 23 0 0 0 chr6 34814367 34814390 -147600852 + AT_rich Low_complexity Low_complexity 1 23 0 3202 128 20 49 chr6 34814748 34815378 -147599864 - MER4B LTR ERV1 0 779 1 358 156 89 44 chr6 34815502 34815592 -147599650 - LTR19C LTR ERV1 0 779 686 1647 110 10 93 chr6 34815593 34815894 -147599348 - LTR9 LTR ERV1 -336 276 1 451 289 21 84 chr6 34815899 34816186 -147599056 + LTR67 LTR ERVL 185 453 -104 242 287 64 11 chr6 34816675 34816769 -147598473 + MER5A DNA MER1_type 4 102 -87 1664 252 111 26 chr6 34816872 34817927 -147597315 + L2 LINE L2 2107 3252 -61 949 318 46 17 chr6 34823377 34823968 -147591274 - L1MEc LINE L1 -4155 2241 1634 244 271 31 21 chr6 34824158 34824254 -147590988 + C-rich Low_complexity Low_complexity 4 100 0 1982 238 60 41 chr6 34824278 34824942 -147590300 - L1ME1 LINE L1 -112 6054 5378 268 297 31 31 chr6 34824963 34825091 -147590151 - L1ME1 LINE L1 -1843 4303 4176 750 157 36 29 chr6 34825099 34825239 -147590003 - FLAM_C SINE Alu 0 143 3 926 62 16 0 chr6 34825306 34825435 -147589807 + L1PA8A LINE L1 5267 5397 -734 242 301 6 54 chr6 34826697 34826863 -147588379 + A-rich Low_complexity Low_complexity 1 158 0 5261 93 21 3 chr6 34829286 34830014 -147585228 + L1PA8A LINE L1 5388 6128 -3 872 87 10 1 chr6 34830022 34830151 -147585091 + L1PA13 LINE L1 5655 5790 -373 2852 72 0 41 chr6 34831440 34831855 -147583387 + L1PA13 LINE L1 5766 6163 0 930 278 53 60 chr6 34832056 34832320 -147582922 + L1MEc LINE L1 1516 1776 -4620 2432 18 0 18 chr6 34832320 34832602 -147582640 + AluY SINE Alu 35 311 0 930 278 53 60 chr6 34832602 34832866 -147582376 + L1MEc LINE L1 1776 2040 -4356 342 92 46 15 chr6 34832879 34832944 -147582298 + L1P LINE L1 3148 3214 -2932 212 57 0 29 chr6 34832944 34832979 -147582263 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1403 201 14 27 chr6 34833268 34833561 -147581681 + AluJo SINE Alu 1 289 -23 1834 54 13 5 chr6 34833865 34834089 -147581153 - AluY SINE Alu -85 226 1 974 208 34 78 chr6 34834864 34835249 -147579993 - L1MC5 LINE L1 -509 7452 7085 697 271 174 12 chr6 34835294 34835622 -147579620 + L1ME3A LINE L1 5615 5995 -175 431 284 50 58 chr6 34839331 34839708 -147575534 - L1ME LINE L1 -4863 1679 1306 308 343 17 42 chr6 34839694 34839930 -147575312 - L1ME LINE L1 -5589 1045 816 * 288 200 62 0 chr6 34840339 34840419 -147574823 - L1ME LINE L1 -5937 697 613 1817 170 0 7 chr6 34840584 34840878 -147574364 + AluJb SINE Alu 1 292 -20 423 0 0 0 chr6 34841513 34841560 -147573682 + (TG)n Simple_repeat Simple_repeat 1 47 0 593 288 82 29 chr6 34841624 34841949 -147573293 + ERVL LTR ERVL 3330 3633 -2021 480 318 34 17 chr6 34841989 34842222 -147573020 + ERVL LTR ERVL 3739 3975 -1789 420 299 112 74 chr6 34842579 34843215 -147572027 + L1MEd LINE L1 431 1090 -5029 386 293 30 96 chr6 34843909 34844179 -147571063 + MIR SINE MIR 11 262 0 618 219 40 61 chr6 34845603 34845881 -147569361 + L1MB8 LINE L1 4140 4411 -1735 3237 207 61 24 chr6 34845883 34847197 -147568045 + L1MB8 LINE L1 4806 6162 -16 2748 199 8 4 chr6 34848063 34848561 -147566681 + MLT1D LTR MaLR 1 500 -5 322 273 11 23 chr6 34848855 34848943 -147566299 - MLT2E LTR ERVL -510 118 32 4207 72 2 2 chr6 34849218 34849757 -147565485 - L1PA8 LINE L1 -5 6167 5629 1245 363 63 25 chr6 34850924 34852121 -147563121 + ERVL LTR ERVL 3827 5068 -696 37 52 0 0 chr6 34852292 34852350 -147562892 + AT_rich Low_complexity Low_complexity 1 58 0 4622 100 11 37 chr6 34852374 34853058 -147562184 - L1PB2 LINE L1 -9 6142 5477 2201 123 3 0 chr6 34853058 34853366 -147561876 - AluY SINE Alu -2 309 1 4622 100 11 37 chr6 34853366 34853410 -147561832 - L1PB2 LINE L1 -674 5477 5433 255 218 36 0 chr6 34853417 34853472 -147561770 - L2 LINE L2 -3 3310 3254 235 395 46 0 chr6 34853625 34853949 -147561293 - L2 LINE L2 -340 2974 2636 1433 260 136 6 chr6 34854920 34855404 -147559838 + MLT1E LTR MaLR 43 589 -4 570 250 118 5 chr6 34856081 34856285 -147558957 + MIR SINE MIR 3 229 -33 208 159 0 58 chr6 34856501 34856570 -147558672 + (CATA)n Simple_repeat Simple_repeat 4 68 0 2801 26 0 0 chr6 34857150 34857456 -147557786 + AluY SINE Alu 1 306 -5 354 91 0 0 chr6 34857813 34857868 -147557374 + (GGA)n Simple_repeat Simple_repeat 1 55 0 291 322 173 0 chr6 34859665 34859873 -147555369 + MIR SINE MIR 8 251 -11 324 48 0 0 chr6 34861081 34861123 -147554119 + (TA)n Simple_repeat Simple_repeat 2 43 0 2123 41 0 16 chr6 34861123 34861369 -147553873 - AluY SINE Alu -13 298 57 302 327 28 53 chr6 34861477 34861911 -147553331 + L1M4 LINE L1 4405 4827 -1319 280 298 133 26 chr6 34862191 34862342 -147552900 - ERVL LTR ERVL -3801 1963 1797 209 225 0 0 chr6 34862739 34862779 -147552463 + MER5A DNA MER1_type 150 189 0 442 288 17 28 chr6 34862790 34862967 -147552275 - MER5B DNA MER1_type -3 175 1 343 260 54 39 chr6 34863130 34863334 -147551908 - LTR33 LTR ERVL -312 209 3 250 234 16 0 chr6 34863337 34863401 -147551841 + L1ME3 LINE L1 4093 4157 -1989 266 272 151 20 chr6 34863407 34863712 -147551530 + L1ME3 LINE L1 4259 4603 -1543 513 161 97 0 chr6 34863855 34863979 -147551263 + L1MB7 LINE L1 6036 6171 -13 627 309 88 25 chr6 34863987 34864466 -147550776 + L1ME3 LINE L1 5429 5937 -225 624 224 12 53 chr6 34864945 34865115 -147550127 + MER3 DNA MER1_type 19 181 -28 403 263 8 17 chr6 34865814 34865932 -147549310 - MIR SINE MIR -18 244 128 889 128 8 8 chr6 34866290 34866423 -147548819 - FRAM SINE Alu -44 132 1 2455 136 21 0 chr6 34868067 34868449 -147546793 - MLT1B LTR MaLR 0 390 1 579 236 50 50 chr6 34869491 34869673 -147545569 + MLT1G1 LTR MaLR 11 192 -403 1383 173 108 61 chr6 34869798 34869880 -147545362 - L1M4 LINE L1 -3828 2554 2477 2119 113 0 10 chr6 34869880 34870173 -147545069 - AluSg SINE Alu -20 290 1 1383 173 108 61 chr6 34870173 34870581 -147544661 - L1M4 LINE L1 -3905 2477 2043 1283 256 8 4 chr6 34870583 34870921 -147544321 - MLT2C1 LTR ERVL -99 298 1 3173 207 55 51 chr6 34870928 34871325 -147543917 - ERVL-C1 LTR ERVL -16 5748 5354 1583 183 11 18 chr6 34871325 34871651 -147543591 - AluJb SINE Alu 0 324 1 3173 207 55 51 chr6 34871651 34872082 -147543160 - ERVL-C1 LTR ERVL -410 5354 4915 1799 150 7 18 chr6 34872082 34872362 -147542880 + L1PA13 LINE L1 1309 1585 -5996 21188 168 15 21 chr6 34872371 34874417 -147540825 + L1PA13 LINE L1 2544 4601 -3000 2228 120 0 9 chr6 34874417 34874733 -147540509 - AluSp SINE Alu 0 313 1 21188 168 15 21 chr6 34874733 34876161 -147539081 + L1PA13 LINE L1 4601 6036 -1565 2536 63 0 0 chr6 34876161 34876461 -147538781 - AluY SINE Alu -11 300 1 21188 168 15 21 chr6 34876461 34876590 -147538652 + L1PA13 LINE L1 6036 6164 -1437 2060 123 3 10 chr6 34876590 34876883 -147538359 - AluSg SINE Alu -19 291 1 21188 168 15 21 chr6 34876883 34878281 -147536961 + L1PA13 LINE L1 6164 7601 0 553 208 19 0 chr6 34878284 34878390 -147536852 - ERVL LTR ERVL -3552 2212 2105 828 177 11 22 chr6 34878411 34878592 -147536650 - L1 LINE L1 -2688 4160 3982 1937 202 51 82 chr6 34878602 34879212 -147536030 - LTR10E LTR ERV1 -42 591 1 22848 261 44 36 chr6 34879215 34879798 -147535444 - HERVI LTR ERV1 -1 7784 7207 2186 87 47 0 chr6 34879798 34880075 -147535167 - AluSg SINE Alu -20 290 1 22848 261 44 36 chr6 34880075 34887080 -147528162 - HERVI LTR ERV1 -578 7207 26 2026 175 49 103 chr6 34887121 34887734 -147527508 - LTR10E LTR ERV1 -42 591 12 8360 214 35 21 chr6 34887744 34888892 -147526350 - L1 LINE L1 -2873 3975 2845 3763 102 2 4 chr6 34888892 34889404 -147525838 - MER9 LTR ERVK 0 511 1 8360 214 35 21 chr6 34889404 34889850 -147525392 - L1 LINE L1 -4003 2845 2407 2215 116 0 28 chr6 34889850 34890168 -147525074 + AluSc SINE Alu 1 309 0 8360 214 35 21 chr6 34890168 34891592 -147523650 - L1 LINE L1 -4441 2407 913 2035 131 3 3 chr6 34891725 34892042 -147523200 - AluSg SINE Alu 0 317 1 345 186 44 62 chr6 34892060 34892173 -147523069 + L1MA7 LINE L1 6178 6288 -3 237 295 27 9 chr6 34892199 34892311 -147522931 - L1M4c LINE L1 -4752 1632 1519 7441 48 2 0 chr6 34892566 34893698 -147521544 + L1PA5 LINE L1 5020 6153 -1 875 282 8 8 chr6 34893698 34893950 -147521292 + MLT2D LTR ERVL 14 265 -149 1369 223 6 57 chr6 34893951 34894301 -147520941 + MER21B-int LTR ERV1 2341 2672 -1519 629 218 14 27 chr6 34894301 34894448 -147520794 + MSTA LTR MaLR 1 145 -283 347 260 0 0 chr6 34894448 34894521 -147520721 + MER21B-int LTR ERV1 2667 2739 -1452 428 266 63 0 chr6 34894527 34894670 -147520572 + FRAM SINE Alu 16 167 -9 1906 261 37 37 chr6 34894680 34894992 -147520250 + MER21B-int LTR ERV1 2742 3056 -1135 4449 169 18 17 chr6 34894992 34895774 -147519468 - LTR39 LTR ERV1 0 783 1 1906 261 37 37 chr6 34895774 34896033 -147519209 + MER21B-int LTR ERV1 3055 3313 -878 2633 188 41 18 chr6 34896131 34896696 -147518546 + MER21B-int LTR ERV1 3463 4040 -151 1592 215 3 0 chr6 34896793 34897091 -147518151 + AluJo SINE Alu 1 299 -13 1734 223 21 62 chr6 34897148 34897614 -147517628 + MER21B LTR ERV1 19 465 -398 635 239 83 30 chr6 34897615 34897933 -147517309 + MSTD LTR MaLR 1 348 -17 2118 123 6 54 chr6 34897944 34898294 -147516948 + MER1B DNA MER1_type 1 333 -6 1421 189 25 83 chr6 34898329 34898912 -147516330 + MER4A LTR ERV1 1 465 0 836 261 52 29 chr6 34898925 34899197 -147516045 + MER21B LTR ERV1 505 782 -81 3097 146 19 54 chr6 34899865 34900460 -147514782 - MER4B LTR ERV1 -36 574 1 626 268 50 81 chr6 34900489 34900587 -147514655 + LTR67 LTR ERVL 82 182 -375 2932 151 43 61 chr6 34900587 34901210 -147514032 - LTR9 LTR ERV1 0 612 1 626 268 50 81 chr6 34901210 34901495 -147513747 + LTR67 LTR ERVL 182 453 -104 204 311 80 26 chr6 34901825 34901976 -147513266 + MER5B DNA MER1_type 1 159 -19 258 273 68 0 chr6 34902003 34902091 -147513151 + MER5A DNA MER1_type 9 102 -87 1938 253 89 24 chr6 34902199 34903330 -147511912 + L2 LINE L2 2108 3311 -2 21 82 0 0 chr6 34906601 34906650 -147508592 + GC_rich Low_complexity Low_complexity 1 49 0 203 318 19 9 chr6 34908450 34908557 -147506685 + CT-rich Low_complexity Low_complexity 5 112 0 900 307 66 17 chr6 34908667 34909246 -147505996 - L1MEc LINE L1 -4155 2241 1635 22 0 0 0 chr6 34909258 34909280 -147505962 + AT_rich Low_complexity Low_complexity 1 22 0 234 235 25 12 chr6 34909441 34909522 -147505720 + CT-rich Low_complexity Low_complexity 5 86 0 1700 266 59 38 chr6 34909560 34910223 -147505019 - L1ME1 LINE L1 -112 6448 5772 254 275 70 28 chr6 34910244 34910386 -147504856 - L1ME1 LINE L1 -1843 4697 4550 747 171 49 0 chr6 34910394 34910517 -147504725 - FLAM_C SINE Alu -4 129 1 5849 95 32 3 chr6 34910613 34911463 -147503779 + L1PA8A LINE L1 5267 6163 0 3551 70 0 34 chr6 34911478 34911976 -147503266 + L1PA13 LINE L1 5683 6163 0 337 241 47 35 chr6 34911983 34912154 -147503088 - L1ME1 LINE L1 -3898 2642 2471 929 299 52 35 chr6 34912167 34912689 -147502553 + L1MEc LINE L1 1515 2045 -4351 341 206 0 0 chr6 34912698 34912766 -147502476 + L1P LINE L1 3148 3215 -2931 1317 223 7 34 chr6 34913053 34913364 -147501878 + AluJo SINE Alu 1 303 0 21 0 0 0 chr6 34913391 34913412 -147501830 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr6 34913583 34913611 -147501631 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 445 241 160 37 chr6 34913646 34913833 -147501409 - HAL1 LINE L1 -2 2505 2296 686 244 185 15 chr6 34913847 34914236 -147501006 - HAL1 LINE L1 -17 2490 2036 572 221 8 8 chr6 34914334 34914456 -147500786 - FLAM_A SINE Alu -11 122 1 951 225 49 4 chr6 34914511 34914755 -147500487 - HAL1 LINE L1 -723 1784 1530 1640 163 53 25 chr6 34914758 34915041 -147500201 - AluJb SINE Alu -21 291 1 359 250 164 0 chr6 34915121 34915249 -147499993 + L2 LINE L2 2499 2647 -667 2009 112 14 3 chr6 34915333 34915619 -147499623 + AluSq SINE Alu 11 299 -14 372 346 58 0 chr6 34916010 34916198 -147499044 - L1ME LINE L1 -398 5772 5574 837 234 39 61 chr6 34918031 34918441 -147496801 - L1MC5 LINE L1 -476 7485 7085 429 255 135 37 chr6 34918468 34918972 -147496270 + L1ME3A LINE L1 5596 6161 -9 813 257 101 22 chr6 34919258 34919624 -147495618 + ERVL LTR ERVL 3880 4274 -1490 4341 198 16 22 chr6 34919771 34920285 -147494957 + L1P LINE L1 3469 3985 -2161 812 112 0 0 chr6 34920285 34920392 -147494850 + U6 snRNA snRNA 1 107 0 4341 198 16 22 chr6 34920392 34921093 -147494149 + L1P LINE L1 3985 4657 -1489 29 0 0 0 chr6 34921109 34921138 -147494104 + AT_rich Low_complexity Low_complexity 1 29 0 1279 138 17 20 chr6 34921853 34922157 -147493085 + L1MB5 LINE L1 4625 4938 -1208 * 3359 243 40 24 chr6 34922139 34923275 -147491967 + L1M4c LINE L1 742 1895 -4489 2198 181 19 19 chr6 34923275 34923707 -147491535 + L1MB5 LINE L1 5743 6174 0 7663 67 35 4 chr6 34923828 34924805 -147490437 - LTR13 LTR ERVK 0 1007 1 203 261 0 0 chr6 34925421 34925467 -147489775 + (CATA)n Simple_repeat Simple_repeat 2 47 0 988 196 0 0 chr6 34925685 34925843 -147489399 - FAM SINE Alu -17 158 1 21 57 0 0 chr6 34925873 34925908 -147489334 + AT_rich Low_complexity Low_complexity 1 35 0 495 299 111 53 chr6 34926063 34926477 -147488765 - L1ME4a LINE L1 -130 5991 5554 1659 282 17 8 chr6 34926479 34927268 -147487974 - ERVL-C1 LTR ERVL -4812 952 28 273 263 68 34 chr6 34927659 34927777 -147487465 + MER58B DNA MER1_type 220 341 0 500 162 40 30 chr6 34928346 34928445 -147486797 + MIR SINE MIR 40 139 -123 300 158 0 0 chr6 34929750 34929807 -147485435 + T-rich Low_complexity Low_complexity 1 57 0 33 43 0 0 chr6 34931165 34931212 -147484030 + AT_rich Low_complexity Low_complexity 1 47 0 1218 212 52 7 chr6 34931738 34931776 -147483466 - MLT2C1 LTR ERVL -2 395 360 288 0 0 0 chr6 34931776 34931808 -147483434 + (TG)n Simple_repeat Simple_repeat 2 33 0 1218 212 52 7 chr6 34931808 34932038 -147483204 - MLT2C1 LTR ERVL -37 360 115 2119 221 69 26 chr6 34932955 34933534 -147481708 - MLT1E3 LTR MaLR 0 624 21 517 277 7 14 chr6 34933760 34933901 -147481341 - MLT1F1 LTR MaLR -8 559 420 * 539 331 33 3 chr6 34933896 34934201 -147481041 - LTR16B LTR ERVL -56 408 95 1143 323 52 35 chr6 34934241 34935274 -147479968 - HERVL LTR ERVL -433 5221 4171 1615 315 78 53 chr6 34935514 34936861 -147478381 - HERVL LTR ERVL -2238 3526 2146 940 321 39 5 chr6 34936899 34937313 -147477929 - HERVL LTR ERVL -2966 2030 1603 325 339 114 3 chr6 34937714 34938070 -147477172 - L1ME3A LINE L1 -211 5951 5552 463 253 207 6 chr6 34938108 34938282 -147476960 + L2 LINE L2 2042 2250 -1064 461 255 50 108 chr6 34938315 34938593 -147476649 + L1MC4a LINE L1 5513 5774 -2034 294 307 18 37 chr6 34938778 34938941 -147476301 + L1MC4a LINE L1 5876 6035 -1773 24 32 0 0 chr6 34939103 34939134 -147476108 + AT_rich Low_complexity Low_complexity 1 31 0 585 170 38 0 chr6 34939888 34939994 -147475248 + MER5A DNA MER1_type 3 112 -77 681 45 0 0 chr6 34940036 34940125 -147475117 + (TC)n Simple_repeat Simple_repeat 2 90 0 4609 72 2 0 chr6 34940440 34941008 -147474234 - MER61E LTR ERV1 0 569 1 292 348 63 32 chr6 34941009 34941167 -147474075 + L2 LINE L2 3110 3272 0 2254 116 7 3 chr6 34942160 34942463 -147472779 - AluSq SINE Alu -9 304 1 21 36 0 0 chr6 34942478 34942506 -147472736 + AT_rich Low_complexity Low_complexity 1 28 0 299 251 30 90 chr6 34942912 34943016 -147472226 - L1ME LINE L1 -412 5709 5617 2387 99 0 0 chr6 34943016 34943310 -147471932 - AluSg SINE Alu -16 294 1 299 251 30 90 chr6 34943310 34943372 -147471870 - L1ME LINE L1 -504 5617 5553 2483 73 3 0 chr6 34943372 34943673 -147471569 + AluY SINE Alu 1 302 -9 567 290 135 34 chr6 34943696 34944426 -147470816 - L2 LINE L2 -3 3310 2514 1536 179 29 36 chr6 34945472 34945620 -147469622 + AluJo SINE Alu 1 148 -164 381 22 0 0 chr6 34945620 34945666 -147469576 + (CA)n Simple_repeat Simple_repeat 2 47 0 1536 179 29 36 chr6 34945666 34945825 -147469417 + AluJo SINE Alu 148 306 -6 2557 176 111 45 chr6 34946504 34947186 -147468056 - LTR8A LTR ERV1 0 727 1 24 0 0 0 chr6 34947767 34947791 -147467451 + AT_rich Low_complexity Low_complexity 1 24 0 915 203 0 0 chr6 34947791 34947949 -147467293 - FRAM SINE Alu -8 168 11 2000 172 126 20 chr6 34947998 34948458 -147466784 + LTR22 LTR ERVK 1 509 0 1984 128 0 0 chr6 34948593 34948859 -147466383 - AluSq SINE Alu -47 266 1 407 324 0 0 chr6 34948973 34949109 -147466133 + L1ME1 LINE L1 6027 6162 -4 328 253 44 114 chr6 34949118 34949391 -147465851 + L1MC4 LINE L1 7762 8015 -27 2572 53 0 0 chr6 34949395 34949695 -147465547 + AluY SINE Alu 1 300 -11 2212 80 7 3 chr6 34950487 34950774 -147464468 + AluSp SINE Alu 1 288 -25 1072 149 6 6 chr6 34951649 34951810 -147463432 + FRAM SINE Alu 1 160 -16 616 200 50 61 chr6 34951864 34952044 -147463198 - MER5B DNA MER1_type 0 178 1 536 178 9 37 chr6 34952129 34952236 -147463006 - L1MB7 LINE L1 -17 6167 6064 222 150 0 0 chr6 34952246 34952286 -147462956 + (T)n Simple_repeat Simple_repeat 1 40 0 741 71 31 0 chr6 34952286 34952384 -147462858 - HY3 scRNA scRNA 0 101 1 9369 144 24 16 chr6 34955548 34957369 -147457873 - L1MA3 LINE L1 0 6305 4453 2298 116 3 0 chr6 34957369 34957670 -147457572 - AluSp SINE Alu -11 302 1 9369 144 24 16 chr6 34957670 34958581 -147456661 - L1MA3 LINE L1 -1852 4453 3551 2037 178 142 42 chr6 34958575 34958859 -147456383 - L1MB3 LINE L1 -4 6179 5925 * 2287 117 0 3 chr6 34958859 34959167 -147456075 + AluSq SINE Alu 5 311 -2 2037 178 142 42 chr6 34959167 34959442 -147455800 - L1MB3 LINE L1 -258 5925 5679 231 88 0 0 chr6 34959442 34959476 -147455766 + (TG)n Simple_repeat Simple_repeat 1 34 0 2037 178 142 42 chr6 34959476 34959633 -147455609 - L1MB3 LINE L1 -504 5679 5317 887 250 52 32 chr6 34959646 34959994 -147455248 - L1MB3 LINE L1 -893 5253 4899 213 39 0 0 chr6 34962497 34962523 -147452719 + (CTG)n Simple_repeat Simple_repeat 2 27 0 444 286 143 0 chr6 34965263 34965438 -147449804 + MIR SINE MIR 24 223 -39 22 0 0 0 chr6 34965472 34965494 -147449748 + AT_rich Low_complexity Low_complexity 1 22 0 2502 67 3 3 chr6 34965506 34965803 -147449439 + AluSc SINE Alu 1 297 -12 2046 139 0 0 chr6 34965804 34966084 -147449158 - AluSx SINE Alu -32 280 1 222 105 0 0 chr6 34966084 34966122 -147449120 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 28 29 0 0 chr6 34966140 34966175 -147449067 + AT_rich Low_complexity Low_complexity 1 35 0 521 292 106 20 chr6 34967292 34967737 -147447505 - HAL1 LINE L1 -5 2502 2020 2234 123 0 3 chr6 34967764 34968073 -147447169 - AluSc SINE Alu -1 308 1 2336 98 10 0 chr6 34968073 34968369 -147446873 - AluSp SINE Alu -14 299 1 293 231 77 34 chr6 34968410 34968527 -147446715 - HAL1 LINE L1 -586 1921 1800 211 280 67 0 chr6 34968576 34968651 -147446591 - MER5A DNA MER1_type -85 104 25 719 209 0 16 chr6 34968679 34968808 -147446434 - AluJb SINE Alu -30 282 156 1636 203 27 78 chr6 34968873 34968943 -147446299 - L1MB2 LINE L1 -1 6170 6098 718 211 0 0 chr6 34968943 34969076 -147446166 + FLAM_C SINE Alu 1 133 0 1636 203 27 78 chr6 34969076 34969527 -147445715 - L1MB2 LINE L1 -73 6098 5676 247 133 0 83 chr6 34969895 34969955 -147445287 + MLT2B3 LTR ERVL 458 546 -8 430 320 72 31 chr6 34969960 34970454 -147444788 - L2 LINE L2 -132 3181 2666 1536 230 27 29 chr6 34970463 34970907 -147444335 - L1MB2 LINE L1 -799 5347 4905 366 176 27 0 chr6 34971834 34971908 -147443334 - MER20 DNA MER1_type -138 81 6 244 291 120 34 chr6 34972260 34972676 -147442566 + L1MC5 LINE L1 7332 7783 -178 215 170 0 19 chr6 34972710 34972763 -147442479 + (CA)n Simple_repeat Simple_repeat 1 52 0 3698 166 23 9 chr6 34972766 34973558 -147441684 - HUERS-P3 LTR ERV1 -8018 901 17 3470 153 16 61 chr6 34973574 34974215 -147441027 - LTR9 LTR ERV1 0 612 1 1000 191 0 6 chr6 34974222 34974395 -147440847 - MER41D LTR ERV1 -336 221 50 2039 150 48 20 chr6 34974395 34974749 -147440493 - L1PB2 LINE L1 -19 6132 5769 419 164 0 0 chr6 34974749 34974819 -147440423 - L1MD2 LINE L1 0 6359 6287 795 174 0 8 chr6 34974819 34974951 -147440291 + AluJo SINE Alu 4 134 -178 1627 197 37 42 chr6 34974951 34975331 -147439911 - L1MD1 LINE L1 -57 6185 5808 4902 193 8 6 chr6 34975340 34976701 -147438541 - L1PA6 LINE L1 -1 6153 4792 1694 216 3 0 chr6 34976700 34977033 -147438209 - L1MB2 LINE L1 -1896 4250 3917 * 2696 96 34 10 chr6 34977052 34977438 -147437804 + MLT2A1 LTR ERVL 6 400 -44 229 55 110 0 chr6 34977438 34977511 -147437731 + (TA)n Simple_repeat Simple_repeat 1 81 0 44 56 0 0 chr6 34977516 34977588 -147437654 + AT_rich Low_complexity Low_complexity 1 72 0 627 81 78 1 chr6 34977617 34978448 -147436794 + (TA)n Simple_repeat Simple_repeat 1 894 0 370 104 22 55 chr6 34978422 34978605 -147436637 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 * 581 88 33 47 chr6 34978611 34979446 -147435796 + (TA)n Simple_repeat Simple_repeat 1 823 0 484 98 0 72 chr6 34979448 34979641 -147435601 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 587 96 65 5 chr6 34979643 34980033 -147435209 + (TA)n Simple_repeat Simple_repeat 1 413 0 616 90 66 0 chr6 34980074 34980241 -147435001 + (TA)n Simple_repeat Simple_repeat 1 178 0 371 73 18 0 chr6 34980241 34980296 -147434946 + MLT2A1 LTR ERVL 389 444 0 44044 74 10 13 chr6 34980296 34985967 -147429275 + HERVL-A1-A1 LTR ERVL 1 5654 0 3179 101 18 40 chr6 34985967 34986421 -147428821 + MLT2A1 LTR ERVL 1 444 0 7856 195 34 8 chr6 34986421 34988207 -147427035 - L1PBa LINE L1 -2234 4628 2793 2232 122 61 19 chr6 34988451 34988811 -147426431 + THE1C LTR MaLR 1 375 0 3842 102 61 88 chr6 34988811 34989485 -147425757 + THE1C-int LTR MaLR 1 656 -924 2394 79 3 0 chr6 34990969 34991260 -147423982 + AluSg SINE Alu 1 292 -18 207 219 0 0 chr6 34991285 34991326 -147423916 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 228 211 42 14 chr6 34991327 34991398 -147423844 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 227 88 29 0 chr6 34992723 34992757 -147422485 + THE1C LTR MaLR 288 322 -53 212 175 18 53 chr6 34992757 34992814 -147422428 + GA-rich Low_complexity Low_complexity 1 55 0 342 45 0 0 chr6 34992844 34992888 -147422354 + (TG)n Simple_repeat Simple_repeat 2 45 0 5782 167 18 10 chr6 34993482 34993619 -147421623 - L1M1 LINE L1 -671 5632 5498 239 0 32 0 chr6 34993619 34993650 -147421592 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5782 167 18 10 chr6 34993650 34994918 -147420324 - L1M1 LINE L1 -805 5498 4214 2560 168 43 111 chr6 34994921 34995589 -147419653 + MER21B LTR ERV1 218 840 -23 1490 177 3 66 chr6 34996143 34996476 -147418766 - AluJb SINE Alu 0 312 1 1820 181 0 3 chr6 34996677 34996981 -147418261 - AluJb SINE Alu -4 308 6 5984 138 71 58 chr6 34997089 34997435 -147417807 - Tigger3b DNA MER2_type -1797 1231 891 215 61 30 0 chr6 34997435 34997468 -147417774 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5984 138 71 58 chr6 34997468 34997660 -147417582 - Tigger3b DNA MER2_type -2137 891 703 8190 23 6 0 chr6 34997660 34998730 -147416512 - L1PA3 LINE L1 0 6155 5083 5984 138 71 58 chr6 34998730 34999405 -147415837 - Tigger3b DNA MER2_type -2325 703 2 419 409 25 9 chr6 34999614 34999934 -147415308 + L1MEc LINE L1 801 1125 -5997 308 282 35 36 chr6 35000311 35000466 -147414776 + L1MEc LINE L1 1370 1491 -4932 * 377 302 67 38 chr6 35000452 35000796 -147414446 + L1M4 LINE L1 3211 3564 -2582 1657 135 11 0 chr6 35000814 35001074 -147414168 + MER2 DNA MER2_type 1 263 -82 2652 121 14 3 chr6 35001185 35001556 -147413686 + THE1C LTR MaLR 1 375 0 2427 263 90 25 chr6 35001566 35002698 -147412544 + L1M4 LINE L1 3593 4798 -1348 477 170 16 0 chr6 35002713 35002822 -147412420 - L1 LINE L1 -1079 5067 4954 821 207 30 18 chr6 35002823 35002987 -147412255 - FRAM SINE Alu -10 166 1 321 250 11 11 chr6 35002992 35003084 -147412158 - L1 LINE L1 -1191 4955 4864 * 3016 222 38 148 chr6 35003078 35003263 -147411979 - L1M4c LINE L1 -4573 2073 1869 803 116 7 22 chr6 35003263 35003401 -147411841 - L1MB2 LINE L1 -1 6170 6035 3016 222 38 148 chr6 35003401 35005509 -147409733 - L1M4c LINE L1 -4777 1869 2 557 270 61 86 chr6 35005508 35005727 -147409515 - L1MEc LINE L1 -4535 1861 1657 * 513 149 53 0 chr6 35005727 35005821 -147409421 + L1MA7 LINE L1 6187 6285 -6 557 270 61 86 chr6 35005821 35006045 -147409197 - L1MEc LINE L1 -4739 1657 1429 900 256 68 8 chr6 35006204 35006454 -147408788 + MLT2D LTR ERVL 1 265 -149 1556 208 6 60 chr6 35006455 35006806 -147408436 + MER21B-int LTR ERV1 2341 2672 -1519 931 113 21 0 chr6 35006806 35006948 -147408294 + MSTA LTR MaLR 1 145 -283 410 219 0 0 chr6 35006948 35007021 -147408221 + MER21B-int LTR ERV1 2667 2739 -1452 435 256 85 16 chr6 35007027 35007156 -147408086 + FRAM SINE Alu 16 153 -23 527 194 22 72 chr6 35007166 35007305 -147407937 + MER21B-int LTR ERV1 2742 2873 -1318 2023 149 0 0 chr6 35007310 35007612 -147407630 + AluSx SINE Alu 1 302 -10 2944 237 61 42 chr6 35007663 35008004 -147407238 + MER21B-int LTR ERV1 3068 3401 -790 414 0 0 0 chr6 35008004 35008050 -147407192 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2944 237 61 42 chr6 35008050 35008663 -147406579 + MER21B-int LTR ERV1 3401 4040 -151 1459 232 0 10 chr6 35008760 35009070 -147406172 + AluJo SINE Alu 1 307 -5 1341 261 11 25 chr6 35009111 35009467 -147405775 + MER21B LTR ERV1 2 352 -511 343 183 24 24 chr6 35009986 35010068 -147405174 + MER4C LTR ERV1 65 146 -319 516 337 34 4 chr6 35010883 35011147 -147404095 - LTR16B LTR ERVL -131 333 62 1423 338 40 36 chr6 35011155 35012374 -147402868 - ERVL LTR ERVL -504 5260 3693 * 1785 298 60 40 chr6 35012373 35013226 -147402016 - ERVL LTR ERVL -2240 3524 2655 265 175 0 0 chr6 35013284 35013324 -147401918 - Alu SINE Alu -19 283 244 * 286 167 21 0 chr6 35013315 35013363 -147401879 - AluSg/x SINE Alu -136 166 118 2133 113 7 0 chr6 35013368 35013668 -147401574 - AluSp SINE Alu -9 304 3 2026 288 53 48 chr6 35013679 35014652 -147400590 - ERVL LTR ERVL -2430 2566 1589 645 312 57 34 chr6 35014950 35015151 -147400091 - ERVL LTR ERVL -3783 1213 999 2033 137 90 29 chr6 35015151 35015494 -147399748 + THE1B LTR MaLR 1 364 0 645 312 57 34 chr6 35015494 35015645 -147399597 - ERVL LTR ERVL -3997 999 853 303 318 94 54 chr6 35015793 35016070 -147399172 - ERVL LTR ERVL -4444 552 265 703 272 78 99 chr6 35016323 35016486 -147398756 - LTR16B LTR ERVL 0 464 299 1691 134 0 0 chr6 35016486 35016725 -147398517 - AluSx SINE Alu -73 239 1 703 272 78 99 chr6 35016725 35017035 -147398207 - LTR16B LTR ERVL -165 299 1 1953 249 68 46 chr6 35017038 35017804 -147397438 - L2 LINE L2 -1661 1653 871 254 233 122 0 chr6 35017876 35017966 -147397276 - L2 LINE L2 -2411 903 803 212 241 63 0 chr6 35018068 35018147 -147397095 - L2 LINE L2 -2513 801 718 1680 261 71 27 chr6 35018176 35018671 -147396571 - MLT1E2 LTR MaLR -11 615 88 2608 26 7 10 chr6 35018671 35018981 -147396261 - AluY SINE Alu -2 309 1 1680 261 71 27 chr6 35018981 35019074 -147396168 - MLT1E2 LTR MaLR -538 88 1 1364 282 105 14 chr6 35019081 35019702 -147395540 - L2 LINE L2 -2620 694 18 2056 131 84 6 chr6 35020932 35021275 -147393967 - Tigger1 DNA MER2_type 0 2418 2049 2357 169 10 5 chr6 35021281 35021678 -147393564 - Tigger1 DNA MER2_type -1965 453 55 215 79 26 0 chr6 35021679 35021717 -147393525 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 231 272 99 0 chr6 35021960 35022041 -147393201 + MIR SINE MIR 112 200 -62 976 143 7 60 chr6 35022314 35022535 -147392707 - MLT2A2 LTR ERVL 0 453 293 267 319 0 0 chr6 35022961 35023055 -147392187 + (TG)n Simple_repeat Simple_repeat 1 94 0 2609 68 48 0 chr6 35023337 35023673 -147391569 - THE1A LTR MaLR -3 352 1 25 0 0 0 chr6 35024106 35024131 -147391111 + AT_rich Low_complexity Low_complexity 1 25 0 948 300 40 9 chr6 35024329 35024749 -147390493 + LTR33 LTR ERVL 10 442 -79 777 169 29 22 chr6 35024858 35024994 -147390248 - AluJo SINE Alu -174 138 2 2513 71 0 0 chr6 35029444 35029741 -147385501 - AluY SINE Alu -14 297 1 855 198 17 6 chr6 35030199 35030376 -147384866 - MLT1B LTR MaLR 0 390 212 2501 68 0 16 chr6 35030541 35030850 -147384392 + AluY SINE Alu 1 304 -7 2817 142 2 4 chr6 35031188 35031645 -147383597 - L1MA4A LINE L1 -9 6294 5839 218 93 56 37 chr6 35031842 35031896 -147383346 + (TACTG)n Simple_repeat Simple_repeat 1 55 0 2376 50 30 3 chr6 35031955 35032253 -147382989 - AluY SINE Alu -5 306 1 371 328 121 3 chr6 35032273 35032631 -147382611 - L1ME3 LINE L1 -211 5951 5552 391 280 252 5 chr6 35032631 35032845 -147382397 + L2 LINE L2 1984 2250 -1064 499 275 76 9 chr6 35032878 35033089 -147382153 + L1MC4a LINE L1 5513 5737 -2071 378 234 71 59 chr6 35033304 35033543 -147381699 + L1MC4a LINE L1 5812 6053 -1755 37 23 0 0 chr6 35033683 35033727 -147381515 + AT_rich Low_complexity Low_complexity 1 44 0 585 170 38 0 chr6 35034475 35034581 -147380661 + MER5A DNA MER1_type 3 112 -77 543 103 0 0 chr6 35034623 35034720 -147380522 + (TC)n Simple_repeat Simple_repeat 2 98 0 4612 75 0 2 chr6 35035035 35035605 -147379637 - MER61E LTR ERV1 0 569 1 309 342 63 32 chr6 35035606 35035764 -147379478 + L2 LINE L2 3110 3272 0 1598 186 6 46 chr6 35037820 35037972 -147377270 + AluJo SINE Alu 1 135 -177 321 26 0 0 chr6 35037972 35038010 -147377232 + (CA)n Simple_repeat Simple_repeat 2 39 0 1598 186 6 46 chr6 35038010 35038180 -147377062 + AluJo SINE Alu 135 310 -2 2370 174 109 79 chr6 35038869 35039214 -147376028 - LTR8A LTR ERV1 0 727 394 2620 45 7 0 chr6 35039214 35039523 -147375719 + AluY SINE Alu 1 311 0 2370 174 109 79 chr6 35039523 35039883 -147375359 - LTR8A LTR ERV1 -333 394 1 913 192 0 0 chr6 35040487 35040643 -147374599 - FRAM SINE Alu -10 166 11 22 0 0 0 chr6 35040780 35040802 -147374440 + AT_rich Low_complexity Low_complexity 1 22 0 2113 88 0 0 chr6 35040827 35041087 -147374155 - AluSq SINE Alu -53 260 1 448 312 1 2 chr6 35041199 35041348 -147373894 + L1ME1 LINE L1 6027 6178 0 371 243 32 119 chr6 35041358 35041576 -147373666 + L1MC4 LINE L1 7779 7977 -65 203 303 0 45 chr6 35041612 35041701 -147373541 + CT-rich Low_complexity Low_complexity 2 86 0 2513 59 3 0 chr6 35042391 35042695 -147372547 + AluSp SINE Alu 1 305 -8 196 235 25 74 chr6 35043193 35043274 -147371968 + MIR SINE MIR 22 98 -110 231 306 0 0 chr6 35043513 35043562 -147371680 - L2 LINE L2 -82 3190 3142 1053 160 11 6 chr6 35043586 35043761 -147371481 + FRAM SINE Alu 1 176 0 752 246 29 11 chr6 35043820 35043995 -147371247 - MER5B DNA MER1_type 0 178 1 507 161 9 54 chr6 35044075 35044187 -147371055 - L1MB7 LINE L1 -17 6167 6061 2461 78 3 3 chr6 35044196 35044505 -147370737 - AluY SINE Alu 0 311 3 792 79 0 0 chr6 35044530 35044631 -147370611 - HY3 scRNA scRNA 0 101 1 1350 43 25 0 chr6 35046286 35046448 -147368794 - AluY SINE Alu -13 298 133 2730 33 0 0 chr6 35046448 35046754 -147368488 - AluYb8 SINE Alu -12 306 1 9598 141 20 12 chr6 35048288 35050042 -147365200 - L1MA3 LINE L1 0 6305 4517 2291 107 3 3 chr6 35050042 35050341 -147364901 + AluSp SINE Alu 1 299 -14 9598 141 20 12 chr6 35050341 35051317 -147363925 - L1MA3 LINE L1 -1788 4517 3551 3225 202 63 65 chr6 35051311 35051938 -147363304 - L1MB2 LINE L1 -4 6167 5540 * 327 25 0 0 chr6 35051938 35051978 -147363264 + (TG)n Simple_repeat Simple_repeat 1 40 0 3225 202 63 65 chr6 35051978 35052251 -147362991 - L1MB2 LINE L1 -631 5540 5268 2561 80 0 0 chr6 35052251 35052562 -147362680 - AluY SINE Alu 0 311 1 3225 202 63 65 chr6 35052562 35052926 -147362316 - L1MB2 LINE L1 -903 5268 4899 2307 141 25 13 chr6 35058085 35058482 -147356760 + LTR3 LTR ERVK 22 423 -9 2154 145 0 0 chr6 35058532 35058843 -147356399 - AluSx SINE Alu -1 311 1 195 114 0 0 chr6 35058843 35058878 -147356364 + (TTATA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 35058906 35058929 -147356313 + AT_rich Low_complexity Low_complexity 1 23 0 203 0 0 36 chr6 35059826 35059854 -147355388 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2598 70 0 3 chr6 35060053 35060365 -147354877 - AluY SINE Alu 0 311 1 711 270 22 65 chr6 35060404 35060759 -147354483 - L1MC5 LINE L1 -519 7442 7103 2278 106 3 0 chr6 35060760 35061062 -147354180 + AluSp SINE Alu 1 303 -10 384 282 110 38 chr6 35061177 35061386 -147353856 + L1ME3A LINE L1 5932 6155 -15 698 309 87 5 chr6 35061685 35062054 -147353188 + ERVL LTR ERVL 3876 4274 -1490 585 333 85 48 chr6 35062172 35062656 -147352586 + L1M4 LINE L1 3437 3938 -2208 2942 126 8 33 chr6 35062702 35062796 -147352446 + L1PA15 LINE L1 5694 5789 -376 2446 64 0 0 chr6 35062796 35063108 -147352134 + AluY SINE Alu 1 312 0 2942 126 8 33 chr6 35063108 35063495 -147351747 + L1PA15 LINE L1 5789 6164 -1 483 35 0 0 chr6 35063534 35063592 -147351650 + AluY SINE Alu 2 59 -259 343 216 91 0 chr6 35063592 35063680 -147351562 - L2 LINE L2 -259 3054 2959 2446 99 0 3 chr6 35064954 35065267 -147349975 - AluSx SINE Alu 0 312 1 1997 176 185 62 chr6 35065364 35065773 -147349469 + L1MD3 LINE L1 6698 7055 -940 366 226 22 12 chr6 35065773 35065865 -147349377 + MLT1F1 LTR MaLR 39 130 -443 1997 176 185 62 chr6 35065865 35066346 -147348896 + L1MD3 LINE L1 7055 7970 -25 2159 90 0 0 chr6 35066360 35066637 -147348605 - AluSx SINE Alu 0 312 36 656 161 116 9 chr6 35066683 35066795 -147348447 + FLAM_C SINE Alu 2 125 -8 409 264 50 0 chr6 35066802 35066961 -147348281 + L1M4 LINE L1 3440 3606 -2540 2322 79 7 3 chr6 35067179 35067471 -147347771 + AluSp SINE Alu 1 293 -20 2422 82 3 3 chr6 35067659 35067962 -147347280 + AluSx SINE Alu 3 305 -7 4876 204 35 47 chr6 35068381 35069151 -147346091 + L1M4 LINE L1 3613 4391 -1755 2399 92 0 0 chr6 35069151 35069444 -147345798 - AluSg SINE Alu -17 293 1 4876 204 35 47 chr6 35069444 35069849 -147345393 + L1M4 LINE L1 4391 4772 -1374 3835 124 35 51 chr6 35069849 35070015 -147345227 + L1MA8 LINE L1 5553 5720 -571 620 189 90 0 chr6 35070015 35070137 -147345105 - FLAM_A SINE Alu 0 133 1 3835 124 35 51 chr6 35070137 35070717 -147344525 + L1MA8 LINE L1 5720 6287 -4 4876 204 35 47 chr6 35070717 35070896 -147344346 + L1M4 LINE L1 4772 4952 -1194 181 390 13 0 chr6 35070901 35070978 -147344264 + MIR SINE MIR 159 236 -26 818 169 36 89 chr6 35071327 35071377 -147343865 - MSTD LTR MaLR 0 396 345 1927 148 7 3 chr6 35071377 35071675 -147343567 - AluJb SINE Alu -12 300 2 818 169 36 89 chr6 35071675 35071889 -147343353 - MSTD LTR MaLR -51 345 78 2524 86 0 0 chr6 35071889 35072190 -147343052 + AluSq SINE Alu 1 301 -12 818 169 36 89 chr6 35072190 35072265 -147342977 - MSTD LTR MaLR -318 78 1 2540 70 0 10 chr6 35072351 35072663 -147342579 - AluSc SINE Alu 0 309 1 1921 154 0 0 chr6 35072987 35073267 -147341975 + AluSx SINE Alu 1 280 -32 2455 92 0 9 chr6 35073298 35073613 -147341629 - AluSx SINE Alu 0 312 1 1561 163 119 41 chr6 35074467 35074632 -147340610 - Tigger1 DNA MER2_type 0 2418 2267 2193 108 4 0 chr6 35074632 35074910 -147340332 - AluSx SINE Alu -33 279 1 1561 163 119 41 chr6 35074910 35075106 -147340136 - Tigger1 DNA MER2_type -151 2267 2029 * 1749 188 51 30 chr6 35075101 35075494 -147339748 - Tigger1 DNA MER2_type -2017 401 1 2641 47 0 0 chr6 35075747 35076046 -147339196 + AluY SINE Alu 2 300 -11 226 203 63 13 chr6 35076840 35076919 -147338323 + (CTGGGG)n Simple_repeat Simple_repeat 2 84 0 * 241 220 0 0 chr6 35076874 35076924 -147338318 + G-rich Low_complexity Low_complexity 3 52 0 1766 142 0 51 chr6 35079822 35080117 -147335125 - AluJo SINE Alu -24 288 9 1797 181 0 3 chr6 35080245 35080533 -147334709 - AluJo SINE Alu -25 287 1 206 271 0 0 chr6 35080907 35080955 -147334287 + G-rich Low_complexity Low_complexity 1 48 0 1138 145 0 0 chr6 35081631 35081783 -147333459 - FAM SINE Alu -22 163 12 1816 161 41 3 chr6 35081999 35082291 -147332951 - AluJb SINE Alu -9 303 1 25 51 0 0 chr6 35082503 35082542 -147332700 + AT_rich Low_complexity Low_complexity 1 39 0 229 308 0 0 chr6 35083287 35083352 -147331890 + GA-rich Low_complexity Low_complexity 3 67 0 193 352 127 21 chr6 35084768 35084910 -147330332 - MIR3 SINE MIR -14 194 38 1092 140 73 0 chr6 35084954 35085133 -147330109 + AluSp SINE Alu 121 312 -1 1661 182 10 10 chr6 35085136 35085443 -147329799 + AluSx SINE Alu 1 307 -5 293 332 88 27 chr6 35085542 35085746 -147329496 + L1MC4a LINE L1 7097 7326 -482 2174 113 10 10 chr6 35085746 35086056 -147329186 + AluSx SINE Alu 1 310 -2 293 332 88 27 chr6 35086056 35086146 -147329096 + L1MC4a LINE L1 7326 7409 -399 1985 164 0 3 chr6 35086149 35086442 -147328800 - AluSx SINE Alu -14 298 7 352 143 0 0 chr6 35087994 35088050 -147327192 - AluJ SINE Alu -36 266 211 886 155 0 27 chr6 35088051 35088199 -147327043 - AluJ SINE Alu -168 144 1 2032 83 79 4 chr6 35090660 35090937 -147324305 - AluSx SINE Alu -14 298 1 214 349 167 0 chr6 35091116 35091242 -147324000 - MIR SINE MIR -64 198 52 486 256 96 45 chr6 35091413 35091573 -147323669 - L2 LINE L2 -1 3312 3139 1546 169 68 0 chr6 35091573 35091839 -147323403 + AluJo SINE Alu 5 288 -24 486 256 96 45 chr6 35091839 35091877 -147323365 - L2 LINE L2 -174 3139 3104 2322 116 0 0 chr6 35092082 35092383 -147322859 + AluSp SINE Alu 1 301 -12 562 265 51 25 chr6 35092882 35093078 -147322164 - MIR SINE MIR -13 249 49 389 216 128 88 chr6 35096690 35096838 -147318404 + MIR SINE MIR 7 160 -102 750 241 97 5 chr6 35096838 35097054 -147318188 - MIR SINE MIR -26 236 1 237 232 122 24 chr6 35097119 35097201 -147318041 + MIR SINE MIR 173 262 0 2141 141 10 0 chr6 35097216 35097521 -147317721 - AluSq SINE Alu -5 308 1 953 250 50 28 chr6 35097543 35097863 -147317379 + MER46C DNA MER2_type 1 327 -11 2256 115 0 3 chr6 35097889 35098184 -147317058 + AluSg SINE Alu 1 294 -16 2331 94 13 0 chr6 35098647 35098955 -147316287 - AluSp SINE Alu -1 312 1 1828 175 7 3 chr6 35098987 35099295 -147315947 - AluJo SINE Alu -3 309 1 301 258 29 84 chr6 35099306 35099485 -147315757 - MIR SINE MIR -68 140 7 2153 106 0 81 chr6 35099566 35099753 -147315489 - AluSx SINE Alu -14 298 146 2240 118 0 10 chr6 35099753 35100066 -147315176 - AluSx SINE Alu -2 310 1 2153 106 0 81 chr6 35100066 35100198 -147315044 - AluSx SINE Alu -166 146 5 2130 78 0 57 chr6 35100214 35100556 -147314686 - AluSc SINE Alu 0 325 1 2495 75 0 31 chr6 35100652 35100973 -147314269 - AluY SINE Alu 0 311 1 2104 110 30 20 chr6 35101009 35101308 -147313934 - AluSx SINE Alu -10 302 1 2339 108 0 0 chr6 35101624 35101930 -147313312 - AluSg1 SINE Alu -3 306 1 1806 142 13 33 chr6 35102094 35102397 -147312845 + AluJo SINE Alu 1 297 -15 242 269 220 29 chr6 35102409 35102759 -147312483 + L1ME4a LINE L1 5209 5373 -773 425 323 63 36 chr6 35102793 35103048 -147312194 + L1ME4a LINE L1 5742 6004 -117 2550 77 0 6 chr6 35103196 35103508 -147311734 - AluSx SINE Alu -2 310 1 1801 84 3 133 chr6 35103583 35103928 -147311314 - AluSg SINE Alu 0 300 1 2524 67 0 3 chr6 35105076 35105376 -147309866 - AluY SINE Alu -12 299 1 1990 122 16 36 chr6 35109371 35109674 -147305568 + AluSx SINE Alu 1 297 -15 313 254 172 0 chr6 35109674 35109796 -147305446 - L2 LINE L2 -21 3292 3150 342 328 221 5 chr6 35109842 35110290 -147304952 - L2 LINE L2 -975 2339 1795 2123 132 17 0 chr6 35110551 35110847 -147304395 + AluSx SINE Alu 1 301 -11 2092 133 7 3 chr6 35110849 35111142 -147304100 + AluSg SINE Alu 3 296 -14 2311 94 0 0 chr6 35111588 35111875 -147303367 - AluSq SINE Alu -25 288 2 2418 92 0 13 chr6 35112237 35112551 -147302691 - AluY SINE Alu -1 310 1 2147 121 0 26 chr6 35112592 35112899 -147302343 + AluJo SINE Alu 1 299 -13 667 226 147 38 chr6 35113468 35113865 -147301377 + L2 LINE L2 2194 2713 -601 2227 116 3 0 chr6 35113867 35114160 -147301082 + AluSg SINE Alu 1 294 -16 803 230 0 0 chr6 35114174 35114326 -147300916 + FRAM SINE Alu 9 160 -16 2120 140 17 0 chr6 35114329 35114629 -147300613 + AluSx SINE Alu 1 305 -7 2293 113 10 0 chr6 35114629 35114930 -147300312 + AluSx SINE Alu 1 304 -8 286 152 22 0 chr6 35114935 35114981 -147300261 + AluJo SINE Alu 1 47 -253 2119 118 14 0 chr6 35114982 35115278 -147299964 + AluSq SINE Alu 1 300 -13 1452 175 15 41 chr6 35115278 35115545 -147299697 + AluJo SINE Alu 36 296 -16 282 116 0 0 chr6 35115564 35115607 -147299635 + (TC)n Simple_repeat Simple_repeat 1 43 0 296 102 20 0 chr6 35115614 35115663 -147299579 + (CA)n Simple_repeat Simple_repeat 2 51 0 977 297 64 16 chr6 35115671 35116210 -147299032 + L2 LINE L2 2741 3313 0 315 264 22 0 chr6 35116401 35116492 -147298750 + (TTAGGG)n Simple_repeat Simple_repeat 4 96 0 2075 136 0 10 chr6 35116940 35117271 -147297971 - AluY SINE Alu 0 311 1 2263 101 7 13 chr6 35117473 35117780 -147297462 + AluSx SINE Alu 1 305 -7 2698 114 12 7 chr6 35117780 35118179 -147297063 + MER39 LTR ERV1 307 707 0 1506 218 85 22 chr6 35118554 35119003 -147296239 + L1ME3 LINE L1 5684 6160 -2 2214 125 3 0 chr6 35119022 35119319 -147295923 - AluSx SINE Alu -14 298 1 502 232 16 0 chr6 35119616 35119741 -147295501 + MER94 DNA DNA 1 127 -7 286 242 34 56 chr6 35120415 35120593 -147294649 + (TCTCTG)n Simple_repeat Simple_repeat 2 175 0 204 40 0 0 chr6 35120664 35120689 -147294553 + (TC)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr6 35122023 35122047 -147293195 + AT_rich Low_complexity Low_complexity 1 24 0 264 321 0 22 chr6 35123943 35124080 -147291162 + GA-rich Low_complexity Low_complexity 2 135 0 183 191 0 48 chr6 35124080 35124122 -147291120 + L2 LINE L2 3220 3259 -13 222 37 0 0 chr6 35124123 35124150 -147291092 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 180 227 0 23 chr6 35124309 35124353 -147290889 + L2 LINE L2 3223 3265 -7 217 0 61 0 chr6 35125959 35125992 -147289250 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 229 228 63 51 chr6 35126488 35126567 -147288675 - LTR42 LTR ERVL -331 164 85 779 168 0 44 chr6 35126949 35127086 -147288156 + FLAM_C SINE Alu 2 132 -1 1835 161 0 16 chr6 35127248 35127553 -147287689 + AluJo SINE Alu 5 304 -8 22 35 0 0 chr6 35128952 35128981 -147286261 + GC_rich Low_complexity Low_complexity 1 29 0 339 271 186 0 chr6 35130592 35130721 -147284521 - MIR3 SINE MIR -24 184 32 2267 100 3 3 chr6 35131213 35131524 -147283718 + AluSx SINE Alu 1 311 -1 1853 167 0 0 chr6 35131685 35131978 -147283264 - AluJb SINE Alu -19 293 1 499 146 62 0 chr6 35132007 35132103 -147283139 - MIR SINE MIR -132 130 29 2067 140 0 0 chr6 35132137 35132444 -147282798 + AluSq SINE Alu 1 307 -6 2091 128 0 0 chr6 35132452 35132748 -147282494 + AluSx SINE Alu 1 296 -16 1604 183 52 0 chr6 35132948 35133237 -147282005 + AluJo SINE Alu 1 304 -8 199 342 144 5 chr6 35134918 35135105 -147280137 + MIR SINE MIR 20 232 -30 227 275 184 9 chr6 35135144 35135253 -147279989 - MIR SINE MIR -60 148 21 245 210 24 8 chr6 35136078 35136202 -147279040 + GA-rich Low_complexity Low_complexity 2 127 0 667 219 8 0 chr6 35136211 35136334 -147278908 + FLAM_A SINE Alu 2 125 -8 453 36 0 0 chr6 35136334 35136389 -147278853 + (GA)n Simple_repeat Simple_repeat 2 56 0 37 0 0 0 chr6 35136809 35136846 -147278396 + AT_rich Low_complexity Low_complexity 1 37 0 2372 66 0 7 chr6 35138278 35138579 -147276663 + AluSg SINE Alu 1 299 -11 1641 135 40 0 chr6 35138790 35139042 -147276200 - AluSx SINE Alu -4 308 47 475 83 0 0 chr6 35139043 35139103 -147276139 - AluS SINE Alu -219 93 34 470 168 257 0 chr6 35139277 35139390 -147275852 - MER5A DNA MER1_type 0 189 48 1953 138 7 0 chr6 35139472 35139761 -147275481 + AluSx SINE Alu 1 291 -21 2026 121 3 7 chr6 35139775 35139906 -147275336 + AluSx SINE Alu 4 134 -178 2271 101 0 0 chr6 35139906 35140202 -147275040 + AluSx SINE Alu 1 296 -16 2026 121 3 7 chr6 35140202 35140368 -147274874 + AluSx SINE Alu 134 300 -12 459 0 0 0 chr6 35141265 35141316 -147273926 + (TG)n Simple_repeat Simple_repeat 2 52 0 2086 100 0 0 chr6 35141325 35141606 -147273636 - AluSx SINE Alu -5 307 27 1663 149 46 7 chr6 35141610 35141892 -147273350 - AluJb SINE Alu -18 294 2 1439 114 0 30 chr6 35141893 35141993 -147273249 - Tigger1 DNA MER2_type -941 1477 1376 2426 77 3 0 chr6 35141993 35142305 -147272937 + AluSp SINE Alu 1 313 0 1439 114 0 30 chr6 35142305 35142441 -147272801 - Tigger1 DNA MER2_type -1042 1376 1248 1684 181 0 3 chr6 35142441 35142733 -147272509 + AluJo SINE Alu 1 291 -21 1538 207 0 37 chr6 35142785 35142872 -147272370 + AluJb SINE Alu 1 90 -222 2311 95 0 0 chr6 35142872 35143177 -147272065 + AluY SINE Alu 1 305 -6 1538 207 0 37 chr6 35143177 35143413 -147271829 + AluJb SINE Alu 90 312 0 473 103 47 103 chr6 35143417 35143465 -147271777 - Tigger1 DNA MER2_type -1152 1266 1217 2073 113 0 0 chr6 35143465 35143782 -147271460 - AluSx SINE Alu 0 317 1 473 103 47 103 chr6 35143782 35143839 -147271403 - Tigger1 DNA MER2_type -1201 1217 1166 586 250 32 0 chr6 35143839 35143963 -147271279 + FAM SINE Alu 1 128 -57 1300 132 0 45 chr6 35143970 35143995 -147271247 + AluJo SINE Alu 85 110 -202 1757 167 34 0 chr6 35143995 35144289 -147270953 - AluJb SINE Alu -8 304 1 1300 132 0 45 chr6 35144289 35144321 -147270921 + AluJo SINE Alu 110 142 -170 1857 134 27 0 chr6 35144321 35144613 -147270629 + AluSp SINE Alu 3 302 -11 1300 132 0 45 chr6 35144613 35144774 -147270468 + AluJo SINE Alu 142 294 -18 1071 136 25 5 chr6 35144774 35144973 -147270269 - Tigger1 DNA MER2_type -2192 226 24 1082 176 22 22 chr6 35145137 35145359 -147269883 - AluJo SINE Alu -23 289 68 2205 75 0 3 chr6 35145366 35145676 -147269566 - AluSg SINE Alu 0 309 1 1873 136 7 0 chr6 35145698 35146005 -147269237 - AluSx SINE Alu 0 309 1 1586 170 0 55 chr6 35146210 35146522 -147268720 - AluJo SINE Alu -17 295 1 2221 93 7 0 chr6 35146955 35147255 -147267987 + AluSq SINE Alu 1 302 -11 2264 100 0 0 chr6 35147732 35148031 -147267211 - AluSg SINE Alu -7 303 5 2241 92 3 7 chr6 35148146 35148451 -147266791 - AluSx SINE Alu -8 304 1 2204 98 26 0 chr6 35148845 35149150 -147266092 - AluSq SINE Alu 0 313 1 2346 70 0 7 chr6 35149212 35149514 -147265728 - AluY SINE Alu -11 300 1 1897 210 12 31 chr6 35149524 35149739 -147265503 - L1ME2 LINE L1 -1 6163 5946 1690 156 0 55 chr6 35149739 35149918 -147265324 - AluJo SINE Alu -21 291 135 2061 110 0 42 chr6 35149918 35150227 -147265015 + AluSg SINE Alu 1 296 -14 1690 156 0 55 chr6 35150227 35150355 -147264887 - AluJo SINE Alu -177 135 1 1897 210 12 31 chr6 35150355 35150625 -147264617 - L1ME2 LINE L1 -218 5946 5687 2258 99 3 0 chr6 35150886 35151188 -147264054 - AluSq SINE Alu -10 303 1 566 214 0 53 chr6 35151219 35151350 -147263892 - FLAM_A SINE Alu -6 136 13 526 372 75 10 chr6 35151383 35151767 -147263475 + L2 LINE L2 2163 2571 -743 229 204 41 0 chr6 35152132 35152181 -147263061 - L2 LINE L2 0 3313 3263 287 377 0 11 chr6 35152185 35152206 -147263036 + CT-rich Low_complexity Low_complexity 2 22 -152 1717 126 0 0 chr6 35152206 35152445 -147262797 - AluSx SINE Alu -73 239 1 287 377 0 11 chr6 35152445 35152598 -147262644 + CT-rich Low_complexity Low_complexity 22 174 0 2050 105 35 0 chr6 35152748 35153033 -147262209 + AluSg SINE Alu 1 295 -15 1964 118 0 0 chr6 35153133 35153437 -147261805 + AluY SINE Alu 4 307 0 2107 106 7 0 chr6 35153620 35153912 -147261330 + AluSx SINE Alu 1 294 -18 773 190 70 0 chr6 35153972 35154130 -147261112 + LTR26E LTR ERV1 1 169 -453 24 0 0 0 chr6 35154162 35154186 -147261056 + AT_rich Low_complexity Low_complexity 1 24 0 2062 116 0 10 chr6 35154188 35154489 -147260753 + AluSc SINE Alu 1 298 -11 1358 99 241 0 chr6 35154492 35154724 -147260518 + AluSg1 SINE Alu 7 294 -15 944 191 0 0 chr6 35154726 35154894 -147260348 + AluJo/FRAM SINE Alu 137 304 -8 2163 102 0 7 chr6 35154905 35155209 -147260033 + AluSx SINE Alu 1 302 -10 968 181 6 0 chr6 35155214 35155374 -147259868 + FRAM SINE Alu 5 165 -1 744 179 122 0 chr6 35155374 35155530 -147259712 - LTR48 LTR ERV1 -438 349 175 329 194 0 42 chr6 35155546 35155618 -147259624 - LTR48B LTR ERV1 -575 69 1 2069 90 11 0 chr6 35155740 35156018 -147259224 - AluSp SINE Alu -32 281 1 519 191 275 39 chr6 35156155 35156333 -147258909 + L2 LINE L2 2758 2977 -337 23 0 0 0 chr6 35156345 35156368 -147258874 + AT_rich Low_complexity Low_complexity 1 23 0 2212 58 7 20 chr6 35156372 35156666 -147258576 + AluY SINE Alu 3 292 -19 2303 87 0 0 chr6 35156666 35156965 -147258277 + AluY SINE Alu 1 299 -12 1785 172 23 0 chr6 35156979 35157282 -147257960 + AluJo SINE Alu 1 310 -2 1799 149 3 3 chr6 35157282 35157564 -147257678 + AluJb SINE Alu 1 282 -30 345 47 0 0 chr6 35157582 35157625 -147257617 + (TG)n Simple_repeat Simple_repeat 2 44 0 277 194 42 28 chr6 35157625 35157687 -147257555 + MER21B LTR ERV1 20 85 -778 1523 266 106 22 chr6 35157742 35158362 -147256880 + MER21B LTR ERV1 98 803 -60 2313 93 0 0 chr6 35158371 35158682 -147256560 + AluY SINE Alu 1 311 0 210 71 0 0 chr6 35159219 35159247 -147255995 + (TCC)n Simple_repeat Simple_repeat 3 30 0 2130 122 0 0 chr6 35159374 35159669 -147255573 + AluSc SINE Alu 1 295 -14 2145 93 3 17 chr6 35159984 35160285 -147254957 + AluSg SINE Alu 1 297 -13 447 264 61 141 chr6 35160285 35160343 -147254899 + L2 LINE L2 3014 3075 -238 1084 170 0 0 chr6 35160343 35160508 -147254734 - FRAM SINE Alu -1 165 1 447 264 61 141 chr6 35160508 35160541 -147254701 + L2 LINE L2 3075 3109 -204 2103 98 0 0 chr6 35160541 35160818 -147254424 + AluSg SINE Alu 14 290 -20 2215 113 3 0 chr6 35160818 35161128 -147254114 + AluSx SINE Alu 1 312 0 447 264 61 141 chr6 35161128 35161202 -147254040 + L2 LINE L2 3108 3186 -127 2386 78 0 0 chr6 35161202 35161508 -147253734 - AluSg SINE Alu -4 306 1 447 264 61 141 chr6 35161508 35161665 -147253577 + L2 LINE L2 3186 3313 0 2215 91 0 3 chr6 35161783 35162079 -147253163 + AluSc SINE Alu 1 295 -14 214 240 133 0 chr6 35165241 35165316 -147249926 + MIR SINE MIR 65 149 -113 2122 94 6 31 chr6 35165378 35165698 -147249544 + AluSp SINE Alu 1 312 -1 2321 90 3 3 chr6 35165757 35166068 -147249174 + AluSq SINE Alu 1 311 -2 335 326 7 21 chr6 35166069 35166210 -147249032 - L2 LINE L2 -1489 1825 1687 818 119 32 0 chr6 35166482 35166608 -147248634 - AluSq/x SINE Alu -180 133 4 2348 91 3 0 chr6 35166621 35166929 -147248313 - AluSc SINE Alu 0 309 1 2354 76 10 0 chr6 35166995 35167299 -147247943 - AluSp SINE Alu -2 311 5 1981 78 89 0 chr6 35167303 35167584 -147247658 - AluSg SINE Alu -4 306 1 243 146 0 0 chr6 35168839 35168880 -147246362 + (CGG)n Simple_repeat Simple_repeat 2 42 0 2207 96 3 3 chr6 35171192 35171493 -147243749 - AluSp SINE Alu -4 309 9 2243 61 7 14 chr6 35172737 35173031 -147242211 - AluSc SINE Alu -17 292 1 1597 176 20 20 chr6 35174204 35174506 -147240736 + AluJo SINE Alu 1 302 -10 612 200 18 0 chr6 35175434 35175544 -147239698 + FLAM_A SINE Alu 12 123 -19 751 148 0 56 chr6 35176380 35176495 -147238747 + AluJo SINE Alu 1 108 -204 2053 128 3 0 chr6 35176495 35176783 -147238459 + AluSg SINE Alu 1 289 -21 751 148 0 56 chr6 35176783 35176809 -147238433 + AluJo SINE Alu 108 134 -178 213 132 0 0 chr6 35177494 35177532 -147237710 + (CAG)n Simple_repeat Simple_repeat 2 39 0 1992 108 7 3 chr6 35177968 35178254 -147236988 + AluSx SINE Alu 1 287 -25 722 184 35 21 chr6 35178842 35178983 -147236259 + FLAM_C SINE Alu 1 143 0 568 268 89 21 chr6 35185820 35186055 -147229187 - MLT1H1 LTR MaLR -51 504 254 2187 82 6 32 chr6 35186534 35186849 -147228393 + AluSg SINE Alu 1 307 -3 258 302 35 12 chr6 35190569 35190655 -147224587 + MIR3 SINE MIR 103 190 -18 1305 166 78 68 chr6 35191075 35191371 -147223871 + AluJo SINE Alu 1 299 -13 2318 81 3 7 chr6 35191374 35191682 -147223560 + AluSc SINE Alu 1 307 -2 2206 115 7 0 chr6 35193917 35194221 -147221021 - AluSx SINE Alu -6 306 1 1599 84 18 4 chr6 35194602 35194696 -147220546 - AluSq SINE Alu -85 228 137 2534 71 0 0 chr6 35194696 35195007 -147220235 - AluY SINE Alu 0 311 1 1599 84 18 4 chr6 35195007 35195137 -147220105 - AluSq SINE Alu -176 137 1 215 337 74 0 chr6 35195854 35195949 -147219293 + L2 LINE L2 3199 3300 -13 2065 134 0 0 chr6 35195951 35196250 -147218992 - AluSx SINE Alu -13 299 1 2049 117 10 7 chr6 35197754 35198054 -147217188 + AluSx SINE Alu 1 301 -11 2248 100 0 10 chr6 35198320 35198629 -147216613 + AluSq SINE Alu 7 312 -1 2232 112 0 0 chr6 35199191 35199496 -147215746 + AluSx SINE Alu 1 305 -7 327 25 0 0 chr6 35200255 35200295 -147214947 + (CA)n Simple_repeat Simple_repeat 2 41 0 1457 161 119 0 chr6 35201620 35201881 -147213361 - AluJo SINE Alu -20 292 1 2064 74 57 7 chr6 35201911 35202194 -147213048 + AluSg1 SINE Alu 1 297 -12 929 172 65 6 chr6 35202335 35202504 -147212738 + AluJb SINE Alu 1 179 -133 267 149 0 0 chr6 35202527 35202582 -147212660 + Alu SINE Alu 254 302 0 292 242 172 0 chr6 35202733 35202861 -147212381 - MIR SINE MIR 0 262 113 1901 132 21 0 chr6 35202880 35203169 -147212073 - AluJb SINE Alu -17 295 1 232 381 42 36 chr6 35203371 35203539 -147211703 + L2 LINE L2 3104 3272 0 2413 74 0 0 chr6 35204794 35205092 -147210150 + AluY SINE Alu 1 298 -13 2258 93 3 0 chr6 35209354 35209654 -147205588 + AluSp SINE Alu 1 301 -12 687 142 0 9 chr6 35210770 35210876 -147204366 + FLAM_C SINE Alu 1 105 -38 1023 130 56 6 chr6 35210883 35211044 -147204198 - AluSg/x SINE Alu -10 302 134 711 116 0 78 chr6 35211056 35211185 -147204057 + AluSg/x SINE Alu 186 304 -5 723 107 18 27 chr6 35211227 35211339 -147203903 + HY1 scRNA scRNA 1 111 -1 604 262 219 0 chr6 35211455 35211665 -147203577 - MIR SINE MIR -4 258 3 200 356 0 0 chr6 35215007 35215066 -147200176 + MIR SINE MIR 45 103 -105 2255 105 0 0 chr6 35215067 35215371 -147199871 - AluSx SINE Alu -8 304 1 237 257 29 0 chr6 35217551 35217621 -147197621 + MIR SINE MIR 71 142 -120 1716 179 31 0 chr6 35219326 35219616 -147195626 + AluJb SINE Alu 1 299 -13 2240 91 0 3 chr6 35220380 35220676 -147194566 - AluSg SINE Alu -15 295 1 2212 100 0 0 chr6 35220916 35221207 -147194035 + AluSx SINE Alu 1 291 -21 2282 96 3 0 chr6 35221547 35221850 -147193392 + AluSp SINE Alu 2 305 -8 2098 112 10 0 chr6 35222084 35222380 -147192862 + AluSp SINE Alu 1 299 -14 2093 94 13 20 chr6 35222382 35222681 -147192561 + AluSg SINE Alu 3 299 -11 184 372 66 41 chr6 35222940 35223061 -147192181 - L2 LINE L2 -1 3271 3148 692 171 51 0 chr6 35223308 35223425 -147191817 - FLAM_A SINE Alu -7 126 4 474 243 137 44 chr6 35223464 35223690 -147191552 - L1ME3A LINE L1 -28 6142 5896 1970 107 18 7 chr6 35224011 35224292 -147190950 + AluSx SINE Alu 8 291 -21 384 294 84 70 chr6 35225473 35225830 -147189412 + L1MC4a LINE L1 5683 6044 -1764 520 207 291 6 chr6 35225944 35226123 -147189119 + MIR SINE MIR 12 241 -21 245 391 103 0 chr6 35226198 35226441 -147188801 - L2 LINE L2 -1005 2309 2042 2007 94 39 3 chr6 35226630 35226916 -147188326 + AluSx SINE Alu 1 296 -16 305 360 143 0 chr6 35227549 35227696 -147187546 - L3 LINE CR1 -823 754 587 2236 89 3 0 chr6 35227699 35228001 -147187241 + AluSx SINE Alu 1 303 -9 293 262 272 0 chr6 35228519 35228622 -147186620 - L2 LINE L2 -4 3309 3179 359 289 98 41 chr6 35228678 35228944 -147186298 - L2 LINE L2 -561 2753 2473 990 80 0 15 chr6 35229879 35230016 -147185226 + AluSq/x SINE Alu 1 135 -178 2116 104 3 10 chr6 35230016 35230324 -147184918 + AluSx SINE Alu 1 306 -6 2482 62 0 0 chr6 35230434 35230743 -147184499 + AluSc SINE Alu 1 309 0 294 125 0 0 chr6 35231532 35231580 -147183662 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 1782 164 0 22 chr6 35232354 35232665 -147182577 - AluJb SINE Alu -8 304 1 2560 40 0 0 chr6 35233153 35233456 -147181786 + AluY SINE Alu 1 303 -8 1708 122 8 4 chr6 35233463 35233717 -147181525 + AluSx SINE Alu 45 299 -13 222 37 0 0 chr6 35233725 35233752 -147181490 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1957 150 0 3 chr6 35233826 35234126 -147181116 + AluSx SINE Alu 1 299 -13 335 273 93 25 chr6 35234148 35234309 -147180933 + L3 LINE CR1 1275 1446 -131 299 290 56 19 chr6 35238953 35239060 -147176182 - MIR SINE MIR -81 127 17 617 227 87 13 chr6 35239081 35239231 -147176011 + MIR SINE MIR 29 189 -73 249 285 109 80 chr6 35240446 35240583 -147174659 - MIR SINE MIR -14 248 108 1919 143 0 7 chr6 35241993 35242287 -147172955 - AluJo SINE Alu -15 297 6 2359 68 6 10 chr6 35242321 35242632 -147172610 - AluY SINE Alu -1 310 1 490 330 39 11 chr6 35242842 35243021 -147172221 + MIR SINE MIR 47 230 -32 2239 100 3 0 chr6 35243383 35243683 -147171559 + AluSp SINE Alu 1 301 -12 1938 157 7 10 chr6 35243690 35243825 -147171417 + AluSx SINE Alu 1 135 -177 2425 54 3 0 chr6 35243825 35244123 -147171119 + AluY SINE Alu 1 299 -12 1938 157 7 10 chr6 35244123 35244292 -147170950 + AluSx SINE Alu 135 304 -8 2221 102 3 3 chr6 35244292 35244605 -147170637 + AluSq SINE Alu 1 313 0 328 342 40 13 chr6 35245763 35245912 -147169330 - L2 LINE L2 -43 3270 3118 378 186 12 0 chr6 35246063 35246149 -147169093 + HsTC2 DNA Tc2 1 87 -1811 1327 107 0 15 chr6 35246417 35246613 -147168629 - AluSq SINE Alu 0 313 121 303 248 103 8 chr6 35246621 35246738 -147168504 - L2 LINE L2 -192 3121 2994 365 250 81 128 chr6 35246869 35247070 -147168172 - L1ME3A LINE L1 0 6170 5990 2476 45 0 10 chr6 35247070 35247379 -147167863 + AluY SINE Alu 2 307 -4 365 250 81 128 chr6 35247379 35247521 -147167721 - L1ME3A LINE L1 -180 5990 5843 1002 179 0 0 chr6 35247522 35247684 -147167558 - AluSg/x SINE Alu -17 295 134 1979 140 0 13 chr6 35247684 35247992 -147167250 - AluSx SINE Alu -8 304 1 619 256 52 56 chr6 35247992 35248074 -147167168 - L1ME3A LINE L1 -316 5854 5773 2247 95 0 0 chr6 35248074 35248368 -147166874 - AluSg SINE Alu -16 294 1 619 256 52 56 chr6 35248368 35248554 -147166688 - L1ME3A LINE L1 -397 5773 5587 875 161 0 8 chr6 35248560 35248690 -147166552 + FLAM_C SINE Alu 2 130 -3 311 327 73 0 chr6 35251527 35251637 -147163605 + L1 LINE L1 4362 4479 -1667 2152 97 0 3 chr6 35251651 35251950 -147163292 + AluSx SINE Alu 1 298 -14 514 133 36 0 chr6 35251959 35252042 -147163200 + AluJ/FLAM SINE Alu 2 87 -225 1394 136 66 73 chr6 35252042 35252344 -147162898 + AluJo SINE Alu 13 312 0 246 267 40 10 chr6 35252471 35252572 -147162670 + L1ME2 LINE L1 5846 5949 -215 1831 127 57 13 chr6 35252660 35252959 -147162283 - AluJb SINE Alu 0 312 1 2253 106 0 0 chr6 35252966 35253277 -147161965 - AluSp SINE Alu -2 311 1 2160 93 0 0 chr6 35253287 35253606 -147161636 - AluSc SINE Alu 0 319 1 634 223 41 0 chr6 35253606 35253727 -147161515 - AluJo/FLAM SINE Alu -176 126 1 267 246 144 0 chr6 35253728 35253846 -147161396 - L1ME LINE L1 -283 5887 5753 27 0 0 0 chr6 35253885 35253912 -147161330 + AT_rich Low_complexity Low_complexity 1 27 0 1935 94 0 8 chr6 35254198 35254464 -147160778 - AluSx SINE Alu 0 312 49 1265 141 0 5 chr6 35256101 35256292 -147158950 - AluSq SINE Alu -118 195 6 818 177 0 0 chr6 35256298 35256422 -147158820 - FLAM_C SINE Alu -8 125 2 248 0 0 30 chr6 35256547 35256580 -147158662 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 2128 113 3 0 chr6 35256581 35256873 -147158369 + AluSp SINE Alu 1 293 -20 605 56 0 0 chr6 35256873 35256945 -147158297 - AluSc SINE Alu -181 128 57 1173 170 0 16 chr6 35256945 35257001 -147158241 - AluSx SINE Alu -121 191 136 2036 99 3 78 chr6 35257001 35257198 -147158044 - AluSx SINE Alu -3 309 146 2253 94 0 0 chr6 35257198 35257495 -147157747 - AluSc SINE Alu -12 297 1 2036 99 3 78 chr6 35257495 35257631 -147157611 - AluSx SINE Alu -166 146 1 1173 170 0 16 chr6 35257631 35257768 -147157474 - AluSx SINE Alu -176 136 1 205 290 10 40 chr6 35258938 35259038 -147156204 + GA-rich Low_complexity Low_complexity 2 98 0 444 19 0 0 chr6 35259765 35259818 -147155424 + (CA)n Simple_repeat Simple_repeat 1 53 0 2163 99 0 0 chr6 35260890 35261182 -147154060 + AluY SINE Alu 1 292 -19 1548 161 74 37 chr6 35262604 35263008 -147152234 - Charlie1 DNA MER1_type 0 2761 2343 256 234 0 0 chr6 35263009 35263056 -147152186 - Charlie1 DNA MER1_type -2692 69 23 324 0 0 0 chr6 35263890 35263926 -147151316 + (TG)n Simple_repeat Simple_repeat 2 37 0 1014 140 190 188 chr6 35263931 35264249 -147150993 - L1MD3 LINE L1 -1 7994 7678 1670 176 21 0 chr6 35264249 35264359 -147150883 + AluJb SINE Alu 7 113 -199 230 0 33 0 chr6 35264359 35264389 -147150853 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1670 176 21 0 chr6 35264389 35264568 -147150674 + AluJb SINE Alu 113 302 -10 1589 195 0 20 chr6 35264574 35264877 -147150365 + AluJo SINE Alu 1 297 -15 1014 140 190 188 chr6 35264877 35264905 -147150337 - L1MD3 LINE L1 -321 7674 7648 2208 95 7 0 chr6 35264905 35265201 -147150041 + AluSp SINE Alu 2 299 -14 1014 140 190 188 chr6 35265201 35265405 -147149837 - L1MD3 LINE L1 -347 7648 7348 372 311 71 36 chr6 35267422 35267469 -147147773 + MIR SINE MIR 57 101 -161 2278 92 7 0 chr6 35267469 35267772 -147147470 - AluSx SINE Alu -7 305 1 372 311 71 36 chr6 35267772 35267920 -147147322 + MIR SINE MIR 101 259 -3 2107 101 40 0 chr6 35270510 35270807 -147144435 + AluSc SINE Alu 1 309 0 218 301 129 0 chr6 35270814 35270907 -147144335 - MIR SINE MIR 0 262 158 982 123 0 26 chr6 35270909 35271064 -147144178 - AluJb SINE Alu -10 302 152 224 159 23 0 chr6 35273125 35273169 -147142073 + MIR SINE MIR 31 75 -133 2367 61 3 0 chr6 35273263 35273559 -147141683 - AluY SINE Alu -14 297 1 260 356 166 5 chr6 35273715 35274136 -147141106 + L2 LINE L2 2222 2710 -604 226 258 68 98 chr6 35274321 35274453 -147140789 + L2 LINE L2 2932 3059 -213 2213 89 7 0 chr6 35279242 35279534 -147135708 - AluSx SINE Alu -18 294 1 565 246 74 55 chr6 35280426 35280483 -147134759 - MIR SINE MIR 0 262 208 1661 124 23 12 chr6 35280483 35280741 -147134501 - AluSx SINE Alu -17 295 35 565 246 74 55 chr6 35280741 35280773 -147134469 - MIR SINE MIR -54 208 178 2351 80 7 0 chr6 35280773 35281073 -147134169 + AluSx SINE Alu 2 303 -9 565 246 74 55 chr6 35281073 35281238 -147134004 - MIR SINE MIR -84 178 2 387 0 0 0 chr6 35283740 35283783 -147131459 + (CA)n Simple_repeat Simple_repeat 1 43 0 804 178 70 6 chr6 35284888 35285045 -147130197 - L1M1 LINE L1 -6890 675 509 2261 109 0 0 chr6 35285074 35285387 -147129855 + AluSq SINE Alu 1 313 0 189 0 0 0 chr6 35286986 35287007 -147128235 + (TA)n Simple_repeat Simple_repeat 1 21 0 423 38 0 0 chr6 35287042 35287095 -147128147 + (CA)n Simple_repeat Simple_repeat 2 54 0 252 245 223 0 chr6 35287097 35287191 -147128051 + L2 LINE L2 3199 3313 0 283 200 0 29 chr6 35287454 35287524 -147127718 - MIR SINE MIR -6 256 189 183 100 0 0 chr6 35288511 35288541 -147126701 + (GGA)n Simple_repeat Simple_repeat 2 31 0 2274 95 0 0 chr6 35288615 35288919 -147126323 + AluSx SINE Alu 1 304 -8 253 291 55 9 chr6 35288935 35289045 -147126197 + MIR SINE MIR 92 206 -56 387 0 0 0 chr6 35289273 35289316 -147125926 + (CA)n Simple_repeat Simple_repeat 2 44 0 1976 128 0 17 chr6 35289318 35289614 -147125628 - AluSg SINE Alu -19 291 1 2172 131 45 70 chr6 35289642 35290085 -147125157 - MSTB1 LTR MaLR 0 432 1 220 289 39 70 chr6 35290147 35290177 -147125065 - L2 LINE L2 -1 3312 3283 1903 160 0 3 chr6 35290177 35290489 -147124753 - AluSx SINE Alu -1 311 1 220 289 39 70 chr6 35290489 35290586 -147124656 - L2 LINE L2 -30 3283 3189 181 283 123 28 chr6 35291295 35291401 -147123841 - L3 LINE CR1 -109 1468 1353 427 298 51 6 chr6 35291654 35291812 -147123430 + MIR3 SINE MIR 15 179 -29 2143 95 34 0 chr6 35292763 35293057 -147122185 + AluSx SINE Alu 1 304 -8 2304 81 3 0 chr6 35293694 35293992 -147121250 - AluY SINE Alu -12 299 1 396 0 0 0 chr6 35294007 35294051 -147121191 + (TG)n Simple_repeat Simple_repeat 1 44 0 2178 82 0 0 chr6 35294051 35294331 -147120911 - AluSq SINE Alu -33 280 1 1925 132 0 38 chr6 35294367 35294685 -147120557 - AluSx SINE Alu -6 306 1 2237 70 10 10 chr6 35294731 35295053 -147120189 - AluY SINE Alu 0 311 1 2091 113 10 0 chr6 35295658 35295951 -147119291 + AluSx SINE Alu 1 296 -16 427 327 152 0 chr6 35296020 35296231 -147119011 + L2 LINE L2 2225 2467 -847 2303 74 24 0 chr6 35296278 35296575 -147118667 - AluSq SINE Alu -9 304 1 2269 91 0 0 chr6 35296848 35297146 -147118096 - AluSg SINE Alu -12 298 1 1969 149 0 0 chr6 35297192 35297488 -147117754 + AluSx SINE Alu 1 296 -16 577 122 12 0 chr6 35298220 35298302 -147116940 + AluJ/FLAM SINE Alu 2 84 -228 319 325 73 7 chr6 35298354 35298505 -147116737 + MIR3 SINE MIR 21 181 -27 2053 90 30 3 chr6 35298928 35299228 -147116014 - AluY SINE Alu -3 308 1 2215 97 0 0 chr6 35299286 35299585 -147115657 + AluSx SINE Alu 1 299 -13 844 150 0 0 chr6 35299605 35299732 -147115510 + FLAM_C SINE Alu 1 127 -16 1978 151 0 0 chr6 35299749 35300054 -147115188 + AluSx SINE Alu 1 305 -7 1838 105 124 0 chr6 35300092 35300358 -147114884 + AluSg SINE Alu 2 300 0 2274 98 3 0 chr6 35300373 35300679 -147114563 + AluSc SINE Alu 1 307 -2 2125 99 17 0 chr6 35301666 35301960 -147113282 - AluSx SINE Alu -13 299 1 379 220 38 30 chr6 35301993 35302073 -147113169 - L1MC5 LINE L1 -58 7903 7820 2209 125 0 0 chr6 35302073 35302385 -147112857 - AluSx SINE Alu 0 312 1 379 220 38 30 chr6 35302385 35302436 -147112806 - L1MC5 LINE L1 -141 7820 7771 838 256 11 5 chr6 35302440 35302631 -147112611 - AluJo SINE Alu -5 307 116 924 230 116 90 chr6 35302631 35302678 -147112564 - L1MC5 LINE L1 -194 7767 7723 2289 87 0 7 chr6 35302678 35302987 -147112255 - AluSc SINE Alu -2 307 1 924 230 116 90 chr6 35302987 35303093 -147112149 - L1MC5 LINE L1 -238 7723 7621 1774 162 3 14 chr6 35303093 35303255 -147111987 - AluJo SINE Alu -18 294 135 2220 92 3 10 chr6 35303255 35303593 -147111649 - AluSp SINE Alu 0 313 1 1774 162 3 14 chr6 35303593 35303727 -147111515 - AluJo SINE Alu -177 135 1 924 230 116 90 chr6 35303727 35304091 -147111151 - L1MC5 LINE L1 -340 7621 7268 2126 81 3 11 chr6 35304091 35304403 -147110839 - AluSc SINE Alu 0 310 1 924 230 116 90 chr6 35304403 35304573 -147110669 - L1MC5 LINE L1 -693 7268 7104 2292 74 0 20 chr6 35304573 35304870 -147110372 - AluSc SINE Alu -18 291 1 924 230 116 90 chr6 35304870 35304885 -147110357 - L1MC5 LINE L1 -857 7104 7091 548 140 50 10 chr6 35304885 35304985 -147110257 - U6 snRNA snRNA -3 104 1 924 230 116 90 chr6 35304985 35305051 -147110191 - L1MC5 LINE L1 -870 7091 6973 2182 75 0 0 chr6 35305056 35305375 -147109867 - AluY SINE Alu 0 319 1 260 370 0 43 chr6 35305515 35305597 -147109645 + L2 LINE L2 3102 3177 -95 2082 118 16 3 chr6 35305597 35305902 -147109340 - AluSx SINE Alu -3 309 1 260 370 0 43 chr6 35305902 35305957 -147109285 + L2 LINE L2 3177 3233 -39 189 365 130 0 chr6 35308916 35309031 -147106211 - L2 LINE L2 -4 3268 3139 839 132 28 7 chr6 35312864 35313029 -147102213 - AluJb SINE Alu 0 304 137 2335 83 6 3 chr6 35313088 35313400 -147101842 + AluSq SINE Alu 1 313 0 529 136 239 7 chr6 35314803 35314958 -147100284 + L1ME3 LINE L1 5970 6160 -2 308 266 106 11 chr6 35314965 35315059 -147100183 - L1MC4 LINE L1 -1341 6701 6599 2115 113 0 28 chr6 35315783 35316102 -147099140 + AluSg SINE Alu 1 310 0 789 167 24 0 chr6 35316261 35316387 -147098855 + FLAM_C SINE Alu 2 130 -13 1880 130 10 17 chr6 35316489 35316790 -147098452 + AluSq SINE Alu 1 299 -14 1701 100 30 118 chr6 35318192 35318521 -147096721 + AluSq SINE Alu 1 300 -13 267 79 0 0 chr6 35318532 35318570 -147096672 + (CAGGG)n Simple_repeat Simple_repeat 1 38 0 1818 128 30 37 chr6 35318676 35318974 -147096268 + AluJb SINE Alu 17 312 0 349 234 105 8 chr6 35318984 35319108 -147096134 + MIR SINE MIR 123 258 -4 798 101 70 8 chr6 35319269 35319398 -147095844 + LTR7 LTR ERV1 1 137 -313 307 290 0 30 chr6 35319425 35319525 -147095717 - MIR SINE MIR -115 147 51 2595 39 3 0 chr6 35319643 35319953 -147095289 + AluY SINE Alu 1 311 0 1776 138 0 35 chr6 35320069 35320381 -147094861 - AluJb SINE Alu -9 303 3 2416 67 3 13 chr6 35320489 35320832 -147094410 - AluSp SINE Alu 0 340 1 2049 111 0 0 chr6 35321503 35321803 -147093439 + AluSx SINE Alu 6 305 0 2337 93 3 0 chr6 35321806 35322118 -147093124 + AluSq SINE Alu 1 313 0 554 171 205 0 chr6 35322775 35322892 -147092350 + FLAM_C SINE Alu 2 142 -1 207 182 212 0 chr6 35323051 35323117 -147092125 + MIR SINE MIR 30 109 -99 356 314 43 5 chr6 35323532 35323717 -147091525 + L2 LINE L2 2712 2903 -411 1831 141 16 10 chr6 35326437 35326742 -147088500 - AluJb SINE Alu -5 307 1 665 37 0 0 chr6 35326760 35326841 -147088401 - HY3 scRNA scRNA -20 81 1 438 252 87 8 chr6 35329182 35329309 -147085933 - MER91A DNA MER1_type -13 183 47 1937 142 0 16 chr6 35331158 35331467 -147083775 + AluSx SINE Alu 1 304 -8 634 222 0 0 chr6 35331477 35331594 -147083648 + FLAM_C SINE Alu 2 118 -25 2164 108 0 3 chr6 35331600 35331897 -147083345 - AluSg SINE Alu -14 296 1 980 83 0 8 chr6 35333780 35333913 -147081329 + AluSq/x SINE Alu 1 132 -181 2065 142 3 0 chr6 35333915 35334226 -147081016 + AluSx SINE Alu 1 312 0 2113 128 3 0 chr6 35334327 35334632 -147080610 + AluSx SINE Alu 7 312 0 1351 188 57 25 chr6 35334881 35335189 -147080053 + AluJo SINE Alu 2 302 0 2035 121 7 7 chr6 35335299 35335597 -147079645 + AluSx SINE Alu 1 298 -14 827 113 17 0 chr6 35335631 35335746 -147079496 + FLAM_C SINE Alu 1 117 -26 2244 82 0 25 chr6 35335773 35336090 -147079152 + AluY SINE Alu 1 309 -2 2068 119 16 0 chr6 35336156 35336459 -147078783 + AluSg SINE Alu 1 308 -2 2171 88 0 10 chr6 35336461 35336783 -147078459 + AluY SINE Alu 1 311 0 265 257 29 0 chr6 35336836 35336906 -147078336 + L2 LINE L2 3242 3313 0 760 313 20 85 chr6 35337160 35337597 -147077645 + L1MC4a LINE L1 5255 5719 -2089 1537 65 52 60 chr6 35337597 35337675 -147077567 + MER30 DNA MER1_type 1 78 -152 2144 59 3 46 chr6 35337675 35338011 -147077231 + AluY SINE Alu 1 311 0 1537 65 52 60 chr6 35338011 35338164 -147077078 + MER30 DNA MER1_type 78 230 0 760 313 20 85 chr6 35338164 35338256 -147076986 + L1MC4a LINE L1 5719 5815 -1993 2477 77 0 0 chr6 35338256 35338569 -147076673 + AluSq SINE Alu 1 313 0 760 313 20 85 chr6 35338569 35338886 -147076356 + L1MC4a LINE L1 5815 6047 -1761 1010 143 0 19 chr6 35338939 35339100 -147076142 + AluSg/x SINE Alu 132 289 -21 715 185 8 8 chr6 35339169 35339288 -147075954 + AluJb SINE Alu 3 124 -188 221 0 0 33 chr6 35339288 35339318 -147075924 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 1974 52 0 12 chr6 35341212 35341461 -147073781 + AluY SINE Alu 54 299 -12 303 358 47 5 chr6 35341583 35341758 -147073484 - L2 LINE L2 -36 3277 3092 1911 109 59 30 chr6 35341758 35342061 -147073181 + AluSx SINE Alu 1 312 0 303 358 47 5 chr6 35342061 35342075 -147073167 - L2 LINE L2 -221 3092 3080 339 308 62 41 chr6 35342462 35342657 -147072585 - MIR SINE MIR -10 252 54 26 30 0 0 chr6 35343752 35343785 -147071457 + GC_rich Low_complexity Low_complexity 1 33 0 2060 110 7 19 chr6 35344116 35344229 -147071013 + AluSx SINE Alu 1 114 -198 1831 92 4 0 chr6 35344229 35344479 -147070763 + AluSg1 SINE Alu 16 266 -43 2060 110 7 19 chr6 35344479 35344674 -147070568 + AluSx SINE Alu 114 305 -7 1011 95 19 6 chr6 35344674 35344832 -147070410 + AluSg/x SINE Alu 132 291 -19 184 147 0 29 chr6 35344833 35344867 -147070375 + MIR3 SINE MIR 145 177 -31 2073 91 37 7 chr6 35346009 35346307 -147068935 - AluSq SINE Alu -6 307 1 2084 125 10 0 chr6 35346666 35346971 -147068271 - AluSx SINE Alu -4 308 1 523 148 0 0 chr6 35347174 35347255 -147067987 - AluJo SINE Alu -14 298 218 484 179 0 94 chr6 35347252 35347301 -147067941 - AluJo SINE Alu -130 182 130 * 2272 79 0 0 chr6 35347301 35347591 -147067651 - AluY SINE Alu -21 290 1 484 179 0 94 chr6 35347591 35347658 -147067584 - AluJo SINE Alu -182 130 77 628 209 26 0 chr6 35347847 35347962 -147067280 + FLAM_C SINE Alu 1 118 -15 2216 95 0 3 chr6 35347990 35348296 -147066946 + AluSg SINE Alu 1 305 -5 1409 126 5 14 chr6 35348406 35348541 -147066701 + AluSx SINE Alu 1 135 -177 2393 70 3 0 chr6 35348541 35348842 -147066400 + AluY SINE Alu 1 302 -9 1409 126 5 14 chr6 35348842 35348921 -147066321 + AluSx SINE Alu 135 213 -99 25 0 0 0 chr6 35348921 35348946 -147066296 + AT_rich Low_complexity Low_complexity 1 25 0 1089 162 16 0 chr6 35348946 35349131 -147066111 + AluSg/x SINE Alu 118 305 -5 2094 125 0 3 chr6 35349449 35349753 -147065489 + AluSx SINE Alu 1 303 -9 802 145 0 16 chr6 35349802 35349926 -147065316 + AluJo SINE Alu 13 134 -178 2119 129 0 0 chr6 35349936 35350246 -147064996 + AluSg SINE Alu 1 310 0 1951 99 46 30 chr6 35350251 35350554 -147064688 + AluSc SINE Alu 1 308 -1 2035 99 0 7 chr6 35350567 35350877 -147064365 + AluSg SINE Alu 1 308 0 439 169 24 6 chr6 35351183 35351432 -147063810 + AluJo SINE Alu 1 293 -19 2064 125 3 0 chr6 35351520 35351816 -147063426 - AluSx SINE Alu -15 297 1 644 215 0 44 chr6 35351859 35351994 -147063248 + FLAM_C SINE Alu 2 130 -13 2099 126 0 0 chr6 35352022 35352323 -147062919 + AluSg1 SINE Alu 6 306 -3 350 298 118 6 chr6 35352334 35352495 -147062747 + MIR SINE MIR 54 232 -30 806 84 0 0 chr6 35352572 35352679 -147062563 - AluSc SINE Alu -202 107 1 2437 80 0 0 chr6 35352691 35353002 -147062240 - AluY SINE Alu 0 311 1 1675 167 31 14 chr6 35353009 35353296 -147061946 - AluJb SINE Alu -20 292 1 2134 102 7 0 chr6 35353306 35353599 -147061643 - AluSg SINE Alu -15 295 1 889 197 0 0 chr6 35353737 35353889 -147061353 - FRAM SINE Alu -11 155 4 29 0 0 0 chr6 35355172 35355201 -147060041 + AT_rich Low_complexity Low_complexity 1 29 0 2088 113 3 0 chr6 35355239 35355541 -147059701 + AluSx SINE Alu 1 303 -9 1634 125 156 0 chr6 35355542 35355798 -147059444 + AluSq SINE Alu 1 296 -7 788 176 47 7 chr6 35355805 35355953 -147059289 + FRAM SINE Alu 20 173 -3 2142 99 0 0 chr6 35356268 35356552 -147058690 - AluSc SINE Alu -25 284 1 2228 102 10 0 chr6 35356656 35356961 -147058281 + AluSq SINE Alu 1 308 -5 2292 56 0 7 chr6 35357210 35357496 -147057746 + AluY SINE Alu 1 284 -27 387 0 0 0 chr6 35357496 35357539 -147057703 + (CA)n Simple_repeat Simple_repeat 2 44 0 1549 167 7 20 chr6 35359976 35360126 -147055116 - AluJo SINE Alu -16 296 150 1980 76 52 31 chr6 35360126 35360416 -147054826 - AluSx SINE Alu -16 296 1 1549 167 7 20 chr6 35360416 35360565 -147054677 - AluJo SINE Alu -162 150 1 1781 173 90 27 chr6 35360574 35360763 -147054479 - L1MB2 LINE L1 -2 6169 5993 1489 191 10 13 chr6 35360763 35361066 -147054176 - AluJb SINE Alu -10 302 1 1781 173 90 27 chr6 35361066 35361249 -147053993 - L1MB2 LINE L1 -178 5993 5758 1991 129 0 13 chr6 35361249 35361551 -147053691 - AluSx SINE Alu -14 298 1 1781 173 90 27 chr6 35361551 35361657 -147053585 - L1MB2 LINE L1 -413 5758 5660 1535 65 0 56 chr6 35362070 35362301 -147052941 + AluY SINE Alu 1 218 -93 1359 77 0 0 chr6 35362301 35362482 -147052760 + AluY SINE Alu 131 311 0 1936 131 24 0 chr6 35366069 35366367 -147048875 + AluSx SINE Alu 1 305 -7 2005 94 3 49 chr6 35366970 35367278 -147047964 + AluSx SINE Alu 1 294 -18 2112 110 7 3 chr6 35367285 35367585 -147047657 + AluSq SINE Alu 1 301 -12 274 157 78 0 chr6 35367595 35367646 -147047596 + L1MB5 LINE L1 6042 6096 -78 692 113 0 0 chr6 35367646 35367743 -147047499 + AluJb SINE Alu 211 307 -5 2373 75 0 0 chr6 35368317 35368622 -147046620 + AluSg SINE Alu 1 305 -5 1058 83 89 0 chr6 35369409 35369566 -147045676 + AluJb SINE Alu 136 306 -6 212 283 0 0 chr6 35370032 35370085 -147045157 + C-rich Low_complexity Low_complexity 1 53 0 1664 154 32 4 chr6 35370943 35371222 -147044020 - AluJo SINE Alu -19 293 7 2184 114 3 0 chr6 35371531 35371838 -147043404 - AluSx SINE Alu -4 308 1 2325 97 3 0 chr6 35372219 35372530 -147042712 + AluSx SINE Alu 1 312 0 2050 79 3 59 chr6 35372860 35373164 -147042078 - AluSp SINE Alu -20 293 7 210 71 0 0 chr6 35373697 35373725 -147041517 + (T)n Simple_repeat Simple_repeat 1 28 0 1447 124 5 0 chr6 35373926 35374143 -147041099 + AluSg/x SINE Alu 84 301 -9 781 62 0 0 chr6 35374146 35374243 -147040999 + AluSg SINE Alu 2 98 -212 1910 66 8 0 chr6 35374243 35374485 -147040757 + AluSg SINE Alu 54 297 -13 246 32 0 0 chr6 35378091 35378122 -147037120 + (T)n Simple_repeat Simple_repeat 1 31 0 24 53 0 0 chr6 35378158 35378196 -147037046 + AT_rich Low_complexity Low_complexity 1 38 0 1787 74 0 29 chr6 35378567 35378811 -147036431 - AluY SINE Alu -11 300 64 882 133 172 119 chr6 35378819 35378948 -147036294 + L1MA7 LINE L1 5917 6038 -253 1685 165 39 0 chr6 35378948 35379233 -147036009 - AluJo SINE Alu -16 296 1 882 133 172 119 chr6 35379233 35379457 -147035785 + L1MA7 LINE L1 6038 6289 -2 815 174 0 0 chr6 35379477 35379615 -147035627 + AluSq/x SINE Alu 1 138 -174 1777 131 52 17 chr6 35379616 35379906 -147035336 + AluSx SINE Alu 1 300 -12 2308 91 0 7 chr6 35380071 35380380 -147034862 - AluSq SINE Alu -6 307 1 2524 55 3 0 chr6 35380429 35380740 -147034502 + AluSp SINE Alu 1 312 -1 891 173 68 0 chr6 35380825 35380987 -147034255 - AluJb SINE Alu -23 289 117 415 284 93 12 chr6 35381032 35381194 -147034048 + MER5B DNA MER1_type 4 178 0 2065 117 3 16 chr6 35381199 35381515 -147033727 + AluSx SINE Alu 1 312 0 2033 125 0 3 chr6 35381528 35381825 -147033417 + AluSx SINE Alu 1 296 -16 2324 45 21 0 chr6 35381930 35382218 -147033024 - AluY SINE Alu -17 294 1 638 161 36 51 chr6 35382218 35382355 -147032887 - AluJb SINE Alu -176 136 2 23 0 0 0 chr6 35382510 35382533 -147032709 + GC_rich Low_complexity Low_complexity 1 23 0 2051 88 24 3 chr6 35383501 35383795 -147031447 - AluY SINE Alu -11 300 1 618 202 34 0 chr6 35383795 35383914 -147031328 - AluJo/FRAM SINE Alu -10 302 180 1457 104 46 8 chr6 35383916 35384156 -147031086 - AluSc SINE Alu -5 304 56 1170 201 148 11 chr6 35384225 35384488 -147030754 - AluJb SINE Alu -1 301 3 768 121 14 71 chr6 35384616 35384757 -147030485 - AluSq/x SINE Alu -178 134 2 1287 142 93 19 chr6 35385552 35385863 -147029379 - MSTA LTR MaLR -64 364 1 231 127 73 18 chr6 35385863 35385917 -147029325 - AluSq/x SINE Alu -191 112 56 1801 133 31 0 chr6 35385936 35386222 -147029020 - AluSg SINE Alu -15 295 1 1553 134 161 8 chr6 35386233 35386494 -147028748 - AluSx SINE Alu 0 302 2 1258 155 9 122 chr6 35386496 35386685 -147028557 - AluJb SINE Alu -14 298 162 1957 103 7 47 chr6 35386685 35386986 -147028256 + AluSx SINE Alu 5 293 -19 1258 155 9 122 chr6 35386986 35387132 -147028110 - AluJb SINE Alu -150 162 1 1839 154 83 0 chr6 35387132 35387457 -147027785 - L1PA16 LINE L1 -11 6155 5804 1857 119 20 24 chr6 35387759 35388054 -147027188 + AluSc SINE Alu 1 294 -15 1848 109 0 66 chr6 35388196 35388499 -147026743 - AluSq SINE Alu -30 283 1 1053 194 75 4 chr6 35388553 35388780 -147026462 - AluSx SINE Alu -17 295 53 1702 141 10 21 chr6 35388986 35389276 -147025966 - AluY SINE Alu -18 293 7 1891 109 11 4 chr6 35389356 35389630 -147025612 - AluSc SINE Alu -32 277 2 1985 79 48 7 chr6 35389631 35389922 -147025320 - AluY SINE Alu -8 303 1 1735 118 45 21 chr6 35389922 35390211 -147025031 - AluSp SINE Alu -17 296 1 1681 113 48 61 chr6 35390299 35390430 -147024812 + AluSx SINE Alu 1 132 -180 2201 48 4 0 chr6 35390430 35390699 -147024543 + AluY SINE Alu 14 283 -28 2079 107 0 14 chr6 35390703 35390993 -147024249 + AluSq SINE Alu 1 286 -27 189 0 0 0 chr6 35390993 35391014 -147024228 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1681 113 48 61 chr6 35391014 35391169 -147024073 + AluSx SINE Alu 133 289 -23 805 113 52 0 chr6 35391301 35391416 -147023826 - AluSq/x SINE Alu -192 121 1 1439 181 13 43 chr6 35391421 35391578 -147023664 - AluJb SINE Alu -18 294 134 2260 101 0 0 chr6 35391578 35391874 -147023368 - AluY SINE Alu -15 296 1 2332 64 7 3 chr6 35391874 35392170 -147023072 - AluY SINE Alu -14 297 1 1439 181 13 43 chr6 35392170 35392314 -147022928 - AluJb SINE Alu -176 136 1 1552 170 17 17 chr6 35392343 35392631 -147022611 + AluJb SINE Alu 7 294 -18 618 241 0 0 chr6 35392634 35392750 -147022492 - FLAM_A SINE Alu -17 116 1 2486 49 10 0 chr6 35392949 35393255 -147021987 - AluY SINE Alu -2 309 1 1459 256 35 14 chr6 35393507 35393933 -147021309 + L2 LINE L2 2414 2848 -466 448 102 0 0 chr6 35393933 35393992 -147021250 + AluSq/x SINE Alu 62 120 -192 1985 146 0 0 chr6 35394203 35394498 -147020744 + AluSx SINE Alu 1 295 -17 937 126 0 15 chr6 35394659 35394794 -147020448 + FLAM_C SINE Alu 1 133 0 300 267 137 7 chr6 35394807 35394953 -147020289 + L1MEd LINE L1 951 1115 -5004 2099 108 3 3 chr6 35394965 35395260 -147019982 - AluSg SINE Alu -15 295 1 437 176 0 24 chr6 35395455 35395540 -147019702 - AluJb SINE Alu -32 280 198 180 0 0 0 chr6 35395547 35395567 -147019675 + (T)n Simple_repeat Simple_repeat 1 20 0 1405 181 51 14 chr6 35395980 35396272 -147018970 + AluJo SINE Alu 1 303 -9 283 348 22 0 chr6 35396296 35396477 -147018765 - L1MC4 LINE L1 -126 7916 7732 1731 159 4 0 chr6 35396485 35396762 -147018480 + AluJo SINE Alu 13 290 -22 2205 97 0 7 chr6 35396772 35397072 -147018170 + AluSx SINE Alu 5 302 -10 2203 93 3 10 chr6 35397182 35397495 -147017747 - AluY SINE Alu 0 311 1 1557 188 3 26 chr6 35397539 35397848 -147017394 - AluJb SINE Alu -10 302 1 2181 79 16 7 chr6 35397851 35398154 -147017088 - AluSq SINE Alu -7 306 1 1052 76 0 0 chr6 35398157 35398289 -147016953 - AluSp SINE Alu -181 132 1 1396 98 0 0 chr6 35398289 35398472 -147016770 - AluSc SINE Alu -12 297 115 1531 99 0 22 chr6 35398472 35398694 -147016548 + AluSg/x SINE Alu 79 295 -15 233 29 29 0 chr6 35398748 35398782 -147016460 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1812 128 3 35 chr6 35398861 35399151 -147016091 + AluJb SINE Alu 18 298 -14 1704 108 140 35 chr6 35399482 35399824 -147015418 + LTR24B LTR ERV1 4 381 -195 4412 127 51 32 chr6 35399825 35401024 -147014218 + pTR5 LTR ERV1 743 2267 -171 615 209 26 40 chr6 35401025 35401218 -147014024 + LTR24B LTR ERV1 374 595 -40 6756 58 5 43 chr6 35401225 35402217 -147013025 - SVA Other Other 0 1386 433 1203 71 3 45 chr6 35402230 35402579 -147012663 - SVA Other Other -520 866 635 5272 72 35 55 chr6 35402608 35403467 -147011775 - SVA Other Other -520 866 25 554 233 15 53 chr6 35403499 35403632 -147011610 + FLAM_A SINE Alu 1 128 -5 1878 149 7 0 chr6 35403647 35403943 -147011299 - AluSx SINE Alu -14 298 1 2036 128 0 3 chr6 35403996 35404292 -147010950 - AluSx SINE Alu -17 295 1 34 24 0 0 chr6 35404302 35404343 -147010899 + AT_rich Low_complexity Low_complexity 1 41 0 2203 90 0 7 chr6 35404347 35404647 -147010595 + AluSx SINE Alu 1 298 -14 262 209 0 0 chr6 35404649 35404692 -147010550 - MER66B LTR ERV1 -146 340 298 2206 105 0 0 chr6 35404772 35405067 -147010175 - AluSg SINE Alu -15 295 1 365 213 88 17 chr6 35405193 35405297 -147009945 - MER5A DNA MER1_type -3 186 69 1214 218 66 3 chr6 35405331 35405620 -147009622 - AluJo SINE Alu -5 307 1 2011 124 3 0 chr6 35405960 35406251 -147008991 - AluSg SINE Alu -18 292 1 802 194 0 7 chr6 35406278 35406417 -147008825 + AluJo SINE Alu 2 139 -173 2271 90 0 13 chr6 35406421 35406732 -147008510 + AluSx SINE Alu 6 312 0 1768 160 3 22 chr6 35406821 35407133 -147008109 + AluJb SINE Alu 1 306 -6 620 279 76 0 chr6 35408896 35409068 -147006174 + MER91A DNA MER1_type 12 196 0 702 263 13 36 chr6 35409675 35409899 -147005343 + L2 LINE L2 3092 3310 -3 209 276 0 26 chr6 35410528 35410604 -147004638 + GA-rich Low_complexity Low_complexity 2 75 0 2194 73 27 3 chr6 35411312 35411613 -147003629 - AluSx SINE Alu -4 308 1 340 298 139 29 chr6 35411873 35412071 -147003171 + MIR SINE MIR 15 228 -34 2194 83 10 13 chr6 35412152 35412464 -147002778 - AluSx SINE Alu -1 311 1 401 219 219 0 chr6 35413227 35413332 -147001910 - MER45A DNA AcHobo -4 174 47 853 251 40 52 chr6 35414510 35414703 -147000539 + L1MC5 LINE L1 7609 7798 -163 2232 95 0 3 chr6 35414703 35414998 -147000244 + AluSq SINE Alu 4 297 -16 853 251 40 52 chr6 35414998 35415131 -147000111 + L1MC5 LINE L1 7798 7931 -30 1751 128 7 56 chr6 35415178 35415482 -146999760 - AluSg SINE Alu -21 289 1 1562 188 34 7 chr6 35415543 35415841 -146999401 + AluJb SINE Alu 7 312 0 197 171 0 0 chr6 35415870 35415905 -146999337 + L2 LINE L2 3221 3255 -17 2174 86 21 0 chr6 35415914 35416204 -146999038 - AluSx SINE Alu -13 299 4 554 252 7 14 chr6 35416446 35416589 -146998653 - MIR SINE MIR 0 262 121 1398 173 7 75 chr6 35416592 35416920 -146998322 + AluJo SINE Alu 9 316 0 291 270 111 0 chr6 35417051 35417177 -146998065 + MIR3 SINE MIR 7 146 -62 312 286 36 18 chr6 35417445 35417557 -146997685 + MER91A DNA MER1_type 64 177 -19 2469 38 0 0 chr6 35417790 35418082 -146997160 + AluY SINE Alu 1 292 -19 264 244 126 50 chr6 35418123 35418242 -146997000 + L2 LINE L2 3186 3313 0 443 185 0 0 chr6 35418470 35418551 -146996691 - MIR SINE MIR -69 193 113 199 239 106 18 chr6 35420096 35420209 -146995033 + L2 LINE L2 2934 3056 -257 1789 173 0 0 chr6 35420300 35420620 -146994622 - AluJo SINE Alu 0 320 1 1006 155 0 13 chr6 35420622 35420777 -146994465 - FRAM SINE Alu -9 157 5 285 365 10 0 chr6 35420779 35420883 -146994359 - MIR SINE MIR -109 153 49 2159 87 10 0 chr6 35420970 35421259 -146993983 - AluSg SINE Alu -18 292 1 2067 102 0 40 chr6 35421264 35421567 -146993675 - AluSx SINE Alu -21 291 1 879 168 0 0 chr6 35421602 35421733 -146993509 + FLAM_C SINE Alu 3 133 0 278 305 11 0 chr6 35421763 35421858 -146993384 - L1ME4a LINE L1 -71 6050 5955 1958 75 3 129 chr6 35421877 35422210 -146993032 + AluSg SINE Alu 1 291 -9 193 186 267 12 chr6 35422279 35422365 -146992877 + L2 LINE L2 3182 3289 -24 397 263 132 0 chr6 35422410 35422524 -146992718 + MIR3 SINE MIR 43 171 -37 332 256 150 44 chr6 35423347 35423527 -146991715 + MIR SINE MIR 64 262 0 * 353 308 24 76 chr6 35423469 35423719 -146991523 - MIR SINE MIR -24 238 2 1245 120 0 5 chr6 35424342 35424526 -146990716 - AluSg/x SINE Alu -1 311 129 1285 159 45 0 chr6 35424551 35424771 -146990471 + AluJo SINE Alu 1 230 -82 277 284 128 27 chr6 35424841 35424989 -146990253 - L1ME3A LINE L1 -32 6138 5976 1968 117 10 3 chr6 35427388 35427679 -146987563 - AluSq SINE Alu -17 296 4 720 243 35 0 chr6 35428484 35428653 -146986589 + MER5A DNA MER1_type 15 189 0 2407 86 0 3 chr6 35429906 35430220 -146985022 + AluSq SINE Alu 1 313 0 450 228 77 15 chr6 35430343 35430489 -146984753 - MIR SINE MIR -61 147 10 257 220 0 17 chr6 35430489 35430548 -146984694 + G-rich Low_complexity Low_complexity 4 61 0 359 315 204 0 chr6 35431690 35431852 -146983390 - MER91A DNA MER1_type 0 196 2 869 208 33 6 chr6 35432146 35432329 -146982913 - MER53 DNA DNA -1 188 1 537 221 0 18 chr6 35433166 35433279 -146981963 + MIR SINE MIR 41 151 -111 2305 60 10 3 chr6 35433280 35433579 -146981663 + AluY SINE Alu 1 301 -10 1002 191 12 0 chr6 35433657 35433825 -146981417 + FAM SINE Alu 1 170 -5 681 254 90 90 chr6 35433827 35433946 -146981296 + L1MC5 LINE L1 6613 6731 -1230 1867 83 0 0 chr6 35433946 35434187 -146981055 + AluSg SINE Alu 56 296 -14 681 254 90 90 chr6 35434187 35434501 -146980741 + L1MC5 LINE L1 6730 7046 -915 187 333 35 11 chr6 35435246 35435333 -146979909 + L2 LINE L2 3021 3109 -163 * 247 286 18 45 chr6 35435330 35435442 -146979800 + MIR SINE MIR 10 118 -144 377 331 70 0 chr6 35435507 35435649 -146979593 + L2 LINE L2 3118 3269 -3 444 161 0 0 chr6 35437573 35437654 -146977588 + CT-rich Low_complexity Low_complexity 2 82 0 269 280 93 47 chr6 35437850 35438000 -146977242 + L1ME3A LINE L1 5794 5950 -220 245 286 27 54 chr6 35438037 35438184 -146977058 + L1MD3 LINE L1 7416 7558 -437 1121 231 78 106 chr6 35438187 35438345 -146976897 + L1MC5 LINE L1 7312 7473 -488 1949 118 31 0 chr6 35438345 35438633 -146976609 - AluSq SINE Alu -14 299 3 1121 231 78 106 chr6 35438633 35438668 -146976574 + L1MC5 LINE L1 7473 7507 -454 2147 107 0 10 chr6 35438668 35438988 -146976254 + AluSg SINE Alu 1 310 0 1121 231 78 106 chr6 35438988 35439031 -146976211 + L1MC5 LINE L1 7507 7550 -411 2269 81 3 10 chr6 35439031 35439329 -146975913 - AluSp SINE Alu -17 296 1 1121 231 78 106 chr6 35439329 35439721 -146975521 + L1MC5 LINE L1 7550 7924 -37 2059 104 0 17 chr6 35440044 35440341 -146974901 + AluSx SINE Alu 1 292 -20 1523 180 42 61 chr6 35441234 35441414 -146973828 + L1MB3 LINE L1 5654 5836 -347 1385 171 49 31 chr6 35441414 35441700 -146973542 - AluJo SINE Alu -21 291 1 1523 180 42 61 chr6 35441700 35442053 -146973189 + L1MB3 LINE L1 5836 6124 -59 2101 104 3 23 chr6 35442053 35442226 -146973016 - AluSx SINE Alu -9 303 137 2089 105 10 10 chr6 35442226 35442531 -146972711 - AluSq SINE Alu -8 305 1 2101 104 3 23 chr6 35442531 35442666 -146972576 - AluSx SINE Alu -175 137 1 1523 180 42 61 chr6 35442666 35442698 -146972544 + L1MB3 LINE L1 6124 6155 -28 383 100 0 146 chr6 35442727 35442762 -146972480 + MER44D DNA MER2_type 337 375 -2112 1388 116 160 0 chr6 35442762 35442894 -146972348 - AluSx SINE Alu -22 290 180 180 0 0 0 chr6 35442894 35442914 -146972328 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1388 116 160 0 chr6 35442914 35443031 -146972211 - AluSx SINE Alu -132 180 1 383 100 0 146 chr6 35443031 35443105 -146972137 + MER44D DNA MER2_type 375 485 -120 1291 152 100 15 chr6 35443166 35443435 -146971807 + LTR23 LTR ERV1 1 292 -145 22 35 0 0 chr6 35443450 35443479 -146971763 + AT_rich Low_complexity Low_complexity 1 29 0 269 143 41 0 chr6 35443488 35443537 -146971705 - MER66B LTR ERV1 -144 342 292 792 185 15 0 chr6 35443598 35443728 -146971514 + FLAM_C SINE Alu 1 132 -1 629 145 35 35 chr6 35443735 35443880 -146971362 + LTR23 LTR ERV1 293 437 0 237 306 96 19 chr6 35444108 35444265 -146970977 + L2 LINE L2 3145 3313 0 27 29 0 0 chr6 35445315 35445349 -146969893 + GC_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr6 35445610 35445633 -146969609 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 35445667 35445688 -146969554 + GC_rich Low_complexity Low_complexity 1 21 0 219 146 0 0 chr6 35445727 35445768 -146969474 + (CCG)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr6 35445775 35445806 -146969436 + GC_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr6 35448437 35448481 -146966761 + GC_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr6 35450043 35450065 -146965177 + GC_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 35450118 35450145 -146965097 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 35450456 35450478 -146964764 + GC_rich Low_complexity Low_complexity 1 22 0 2251 88 0 0 chr6 35451436 35451733 -146963509 + AluSx SINE Alu 5 301 -11 293 198 38 2 chr6 35452056 35452116 -146963126 + MER57A LTR ERV1 295 348 -55 213 167 24 0 chr6 35452162 35452204 -146963038 + MIR SINE MIR 92 134 -128 30 0 0 0 chr6 35452379 35452409 -146962833 + AT_rich Low_complexity Low_complexity 1 30 0 2105 114 0 0 chr6 35452409 35452698 -146962544 - AluSq SINE Alu -24 289 1 1724 162 3 17 chr6 35453237 35453534 -146961708 + AluJo SINE Alu 1 293 -19 855 144 0 8 chr6 35453569 35453701 -146961541 + FLAM_C SINE Alu 1 131 -2 191 305 211 0 chr6 35453788 35453883 -146961359 + MIR3 SINE MIR 89 203 -5 2181 119 0 10 chr6 35454934 35455246 -146959996 + AluSq SINE Alu 1 309 -4 1290 178 73 7 chr6 35455399 35455685 -146959557 + AluJb SINE Alu 1 305 -7 376 175 0 0 chr6 35455691 35455754 -146959488 - AluJb SINE Alu -35 267 205 1559 161 3 42 chr6 35455759 35455921 -146959321 - AluJb SINE Alu -13 299 153 2356 82 7 3 chr6 35455921 35456227 -146959015 - AluSq SINE Alu -6 307 1 1559 161 3 42 chr6 35456227 35456375 -146958867 - AluJb SINE Alu -159 153 1 2084 133 46 20 chr6 35456375 35456451 -146958791 + Tigger1 DNA MER2_type 2014 2087 -331 2166 114 3 3 chr6 35456451 35456759 -146958483 + AluSx SINE Alu 1 308 -4 2084 133 46 20 chr6 35456759 35457073 -146958169 + Tigger1 DNA MER2_type 2087 2414 -4 473 191 127 4 chr6 35457138 35457374 -146957868 - L1ME3A LINE L1 -214 5956 5594 1690 150 36 0 chr6 35457380 35457660 -146957582 - AluJb SINE Alu -10 302 13 799 132 0 59 chr6 35457685 35457821 -146957421 - FLAM_C SINE Alu -1 132 5 1488 152 7 24 chr6 35457827 35457954 -146957288 - L1M3 LINE L1 -573 5607 5479 2351 85 0 0 chr6 35457954 35458260 -146956982 - AluSg SINE Alu -4 306 1 1488 152 7 24 chr6 35458260 35458422 -146956820 - L1M3 LINE L1 -701 5479 5323 1235 133 39 10 chr6 35458422 35458625 -146956617 - AluJb SINE Alu -17 295 87 805 208 110 25 chr6 35458625 35458779 -146956463 + Charlie2 DNA MER1_type 2475 2615 -247 2282 99 0 3 chr6 35458779 35459092 -146956150 + AluSx SINE Alu 1 312 0 2046 105 0 3 chr6 35459099 35459420 -146955822 + AluSx SINE Alu 1 320 0 805 208 110 25 chr6 35459420 35459612 -146955630 + Charlie2 DNA MER1_type 2620 2860 -2 232 114 23 0 chr6 35459664 35459708 -146955534 - MER5A DNA MER1_type -84 105 61 2249 93 36 0 chr6 35459711 35460012 -146955230 - AluSx SINE Alu 0 312 1 841 103 15 37 chr6 35460020 35460156 -146955086 - FLAM_C SINE Alu 0 133 1 330 171 29 0 chr6 35460156 35460226 -146955016 - MER5A DNA MER1_type -114 75 4 326 278 11 0 chr6 35460235 35460325 -146954917 - L1ME LINE L1 -523 5647 5557 216 277 117 52 chr6 35460373 35460604 -146954638 + L2 LINE L2 1917 2162 -1152 2256 107 3 3 chr6 35460642 35460952 -146954290 + AluSx SINE Alu 1 310 -2 911 154 0 0 chr6 35460998 35461141 -146954101 + FLAM_C SINE Alu 1 143 0 700 155 115 135 chr6 35461142 35461200 -146954042 + MLT2C2 LTR ERVL 17 75 -389 614 231 15 15 chr6 35461200 35461330 -146953912 - FLAM_A SINE Alu -3 130 1 700 155 115 135 chr6 35461330 35461381 -146953861 + MLT2C2 LTR ERVL 75 125 -339 1953 136 0 32 chr6 35461381 35461697 -146953545 + AluSq SINE Alu 1 306 -7 700 155 115 135 chr6 35461697 35461735 -146953507 + MLT2C2 LTR ERVL 125 162 -302 2058 107 24 0 chr6 35461735 35462025 -146953217 - AluSg SINE Alu -13 297 1 1627 118 81 18 chr6 35462026 35462298 -146952944 - AluSc SINE Alu -20 289 1 700 155 115 135 chr6 35462298 35462398 -146952844 + MLT2C2 LTR ERVL 161 263 -201 2405 74 0 0 chr6 35462398 35462695 -146952547 + AluSg SINE Alu 1 297 -13 2298 46 0 4 chr6 35462718 35462998 -146952244 + AluY SINE Alu 1 279 -32 219 36 0 0 chr6 35462998 35463026 -146952216 + (CAA)n Simple_repeat Simple_repeat 3 30 0 184 308 241 8 chr6 35463150 35463283 -146951959 + L2 LINE L2 2579 2742 -572 1094 238 102 56 chr6 35463595 35463986 -146951256 - MLT1I LTR MaLR 0 409 1 498 351 51 16 chr6 35464219 35464364 -146950878 - LTR16C LTR ERVL -2 489 351 2320 96 0 0 chr6 35464364 35464667 -146950575 + AluSx SINE Alu 1 303 -9 498 351 51 16 chr6 35464667 35464834 -146950408 - LTR16C LTR ERVL -140 351 166 701 146 24 24 chr6 35464853 35464976 -146950266 + AluSg/x SINE Alu 181 303 -6 2225 105 3 0 chr6 35464976 35465282 -146949960 + AluSx SINE Alu 1 307 -5 1342 157 58 14 chr6 35465378 35465704 -146949538 + L1PA16 LINE L1 5805 6174 0 2251 97 0 0 chr6 35465708 35466008 -146949234 + AluSx SINE Alu 1 300 -12 1448 166 11 37 chr6 35466108 35466379 -146948863 + AluJo SINE Alu 29 292 -20 1627 175 7 36 chr6 35466389 35466698 -146948544 + AluJo SINE Alu 1 300 -12 2056 91 56 7 chr6 35466702 35466989 -146948253 + AluSg1 SINE Alu 1 301 -8 347 204 66 105 chr6 35467008 35467160 -146948082 + L1MC5 LINE L1 7794 7939 -22 2124 102 0 0 chr6 35467205 35467529 -146947713 - AluSq SINE Alu 0 324 1 304 295 83 68 chr6 35467611 35468008 -146947234 - L1MC4a LINE L1 -1741 6067 5665 1057 237 4 4 chr6 35469640 35469868 -146945374 + MIR SINE MIR 2 229 -33 1194 231 165 18 chr6 35469894 35470293 -146944949 - LTR16C LTR ERVL -15 476 19 2196 111 0 13 chr6 35470644 35470960 -146944282 + AluSx SINE Alu 1 312 0 2349 67 3 22 chr6 35471557 35471873 -146943369 - AluY SINE Alu -1 310 1 2387 59 0 3 chr6 35471881 35472184 -146943058 - AluY SINE Alu -9 302 1 464 301 174 17 chr6 35472335 35472571 -146942671 - MLT1J LTR MaLR 0 511 239 954 233 12 33 chr6 35472880 35473125 -146942117 + MLT1H LTR MaLR 14 253 -296 740 257 93 51 chr6 35473305 35473379 -146941863 - MLT1I LTR MaLR -55 354 285 2288 91 0 0 chr6 35473379 35473677 -146941565 - AluSx SINE Alu -14 298 1 740 257 93 51 chr6 35473677 35473839 -146941403 - MLT1I LTR MaLR -124 285 108 1324 205 116 32 chr6 35473929 35474334 -146940908 - MLT1J LTR MaLR -72 439 1 2235 91 7 3 chr6 35474418 35474716 -146940526 - AluSq SINE Alu -14 299 1 730 158 0 0 chr6 35474716 35474830 -146940412 - AluSg/x SINE Alu -9 300 187 248 246 87 0 chr6 35476621 35476690 -146938552 + MER116 DNA Mariner 6 80 0 539 302 88 0 chr6 35477322 35477527 -146937715 + MIR SINE MIR 3 225 -37 2215 104 3 0 chr6 35477527 35477825 -146937417 + AluSg SINE Alu 5 303 -7 2022 85 44 0 chr6 35477826 35478130 -146937112 + AluSx SINE Alu 2 317 0 2163 101 3 3 chr6 35478164 35478461 -146936781 - AluSp SINE Alu -16 297 1 835 188 0 0 chr6 35478461 35478594 -146936648 - FLAM_A SINE Alu 0 133 1 2273 231 96 25 chr6 35478918 35479342 -146935900 - L1ME3 LINE L1 0 6162 5667 6870 58 9 31 chr6 35479342 35480989 -146934253 - SVA Other Other -723 1386 9 2273 231 96 25 chr6 35480989 35481247 -146933995 - L1ME3 LINE L1 -495 5667 5429 194 319 59 25 chr6 35482282 35482401 -146932841 - L2 LINE L2 0 3313 3191 27 49 0 0 chr6 35482474 35482515 -146932727 + AT_rich Low_complexity Low_complexity 1 41 0 2016 120 7 0 chr6 35482563 35482882 -146932360 + AluSq SINE Alu 1 321 0 255 344 74 0 chr6 35483112 35483234 -146932008 + MIR SINE MIR 53 183 -79 1870 107 56 0 chr6 35483292 35483591 -146931651 - AluSx SINE Alu 0 314 1 2132 122 0 3 chr6 35484328 35484639 -146930603 - AluSg SINE Alu 0 310 1 2086 103 27 3 chr6 35484761 35485053 -146930189 + AluSx SINE Alu 1 299 -13 195 368 0 0 chr6 35485323 35485380 -146929862 + MIR SINE MIR 16 72 -136 952 121 8 0 chr6 35485398 35485530 -146929712 - FLAM_C SINE Alu 0 133 1 2081 120 0 23 chr6 35485557 35485866 -146929376 + AluSx SINE Alu 7 308 -4 368 346 132 0 chr6 35486061 35486266 -146928976 + MIR SINE MIR 20 251 -11 501 84 0 0 chr6 35486269 35486340 -146928902 + (TA)n Simple_repeat Simple_repeat 2 72 0 1861 136 0 46 chr6 35486340 35486495 -146928747 - AluSx SINE Alu -24 288 152 2236 85 24 0 chr6 35486495 35486789 -146928453 - AluSp SINE Alu -12 301 1 1861 136 0 46 chr6 35486789 35486935 -146928307 - AluSx SINE Alu -160 152 1 195 42 0 0 chr6 35487344 35487368 -146927874 + (T)n Simple_repeat Simple_repeat 1 24 0 630 272 0 15 chr6 35487471 35487607 -146927635 - AluJo SINE Alu -59 253 120 1935 130 3 23 chr6 35487615 35487916 -146927326 - AluSx SINE Alu -17 295 1 31 0 0 0 chr6 35487916 35487947 -146927295 + AT_rich Low_complexity Low_complexity 1 31 0 263 314 141 0 chr6 35488002 35488123 -146927119 + MIR SINE MIR 121 258 -4 189 107 0 0 chr6 35488134 35488162 -146927080 + (CAT)n Simple_repeat Simple_repeat 3 30 0 795 237 75 12 chr6 35488999 35489259 -146925983 - MLT1C LTR MaLR -4 589 187 1835 147 0 43 chr6 35489318 35489644 -146925598 - AluSx SINE Alu 0 312 1 2417 74 3 0 chr6 35489653 35489962 -146925280 - AluSg SINE Alu 0 310 1 739 83 0 0 chr6 35489966 35490062 -146925180 - AluSp/q SINE Alu -12 301 206 764 146 70 6 chr6 35490098 35490269 -146924973 - MLT1C LTR MaLR -285 182 1 527 139 35 0 chr6 35490328 35490414 -146924828 - AluJb SINE Alu -201 111 23 862 221 39 54 chr6 35490428 35490728 -146924514 - L2 LINE L2 -239 3074 2784 2179 114 3 0 chr6 35492224 35492523 -146922719 - AluSx SINE Alu -8 304 5 338 258 129 59 chr6 35497565 35497751 -146917491 - MIR3 SINE MIR -9 199 1 310 316 119 26 chr6 35501109 35501378 -146913864 + L2 LINE L2 2122 2415 -899 404 316 0 0 chr6 35502417 35502569 -146912673 + (TCTCTG)n Simple_repeat Simple_repeat 5 156 0 1810 160 0 35 chr6 35503288 35503601 -146911641 - AluJb SINE Alu -2 310 9 1997 130 0 48 chr6 35503619 35503786 -146911456 - AluSx SINE Alu -12 300 153 2411 45 10 0 chr6 35503786 35504078 -146911164 - AluY SINE Alu -16 295 1 1997 130 0 48 chr6 35504078 35504225 -146911017 - AluSx SINE Alu -159 153 1 223 337 102 0 chr6 35504355 35504453 -146910789 - MIR3 SINE MIR -6 202 95 202 311 84 42 chr6 35507595 35507714 -146907528 + MER5B DNA MER1_type 1 124 -54 319 318 11 0 chr6 35508644 35508732 -146906510 - MER91B DNA MER1_type -2 188 100 360 336 0 31 chr6 35508732 35508860 -146906382 - MER91B DNA MER1_type -55 135 12 504 306 0 0 chr6 35512290 35512411 -146902831 + MIR SINE MIR 14 134 -128 290 301 87 57 chr6 35512412 35512687 -146902555 + L1ME3A LINE L1 5316 5604 -562 2288 100 0 3 chr6 35512687 35512997 -146902245 + AluSc SINE Alu 1 309 0 290 301 87 57 chr6 35512997 35513053 -146902189 + L1ME3A LINE L1 5604 5657 -509 336 360 88 18 chr6 35513063 35513336 -146901906 + L1ME3A LINE L1 5671 5970 -204 252 327 18 36 chr6 35513449 35513559 -146901683 + MIR SINE MIR 130 237 -25 1700 187 0 31 chr6 35513934 35514255 -146900987 - AluJb SINE Alu -1 311 1 291 239 214 34 chr6 35514353 35514470 -146900772 - MIR3 SINE MIR -16 192 55 333 346 13 38 chr6 35521614 35521773 -146893469 + MER5A DNA MER1_type 35 189 0 1931 132 17 0 chr6 35521850 35522145 -146893097 + AluJb SINE Alu 1 300 -12 1302 203 0 114 chr6 35522282 35522632 -146892610 + AluSx SINE Alu 1 310 -2 2117 115 0 7 chr6 35523041 35523346 -146891896 - AluSc SINE Alu -6 303 1 749 71 20 0 chr6 35523349 35523448 -146891794 - AluSq/x SINE Alu -180 132 32 5696 76 25 40 chr6 35523501 35524884 -146890358 - SVA Other Other -518 1009 52 1933 117 13 30 chr6 35525024 35525184 -146890058 - AluSx SINE Alu -18 294 140 2250 79 3 26 chr6 35525184 35525489 -146889753 - AluY SINE Alu -13 298 1 1933 117 13 30 chr6 35525489 35525627 -146889615 - AluSx SINE Alu -172 140 1 2000 135 20 0 chr6 35525631 35525928 -146889314 - AluSx SINE Alu -9 303 1 1380 174 59 42 chr6 35525990 35526277 -146888965 - AluJo SINE Alu -20 292 1 471 194 16 8 chr6 35527002 35527131 -146888111 + GA-rich Low_complexity Low_complexity 3 132 0 201 39 0 0 chr6 35530523 35530549 -146884693 + (TCTCCC)n Simple_repeat Simple_repeat 2 27 0 4207 71 16 20 chr6 35532529 35533079 -146882163 - LTR14 LTR ERVK 0 548 1 42473 1 0 0 chr6 35533079 35538343 -146876899 - HERVKC4 LTR ERVK 0 5262 1 5162 2 0 0 chr6 35538343 35538891 -146876351 - LTR14 LTR ERVK 0 548 1 221 296 17 35 chr6 35540770 35540885 -146874357 + G-rich Low_complexity Low_complexity 2 114 0 336 281 167 9 chr6 35545291 35545405 -146869837 + MIR SINE MIR 72 203 -59 194 306 16 97 chr6 35546083 35546207 -146869035 + L2 LINE L2 2606 2719 -595 808 154 0 22 chr6 35547830 35547966 -146867276 - FLAM_C SINE Alu 0 133 1 188 291 35 23 chr6 35548441 35548527 -146866715 - L2 LINE L2 -1054 2260 2174 217 365 187 29 chr6 35550800 35551041 -146864201 - L3 LINE CR1 -625 952 674 550 329 93 66 chr6 35551263 35551628 -146863614 - L2 LINE L2 0 3272 2898 268 317 50 20 chr6 35552814 35552915 -146862327 + MIR SINE MIR 132 235 -27 339 226 24 0 chr6 35552954 35553038 -146862204 + MER94 DNA DNA 33 118 -16 201 158 0 0 chr6 35553525 35553563 -146861679 + (CTG)n Simple_repeat Simple_repeat 1 38 0 546 146 27 64 chr6 35553929 35554039 -146861203 - FLAM_C SINE Alu -3 140 35 433 311 30 7 chr6 35562501 35562636 -146852606 - MIR SINE MIR -55 153 16 472 348 48 5 chr6 35563875 35564085 -146851157 - MIR SINE MIR -32 230 12 199 267 67 38 chr6 35565890 35565995 -146849247 + L2 LINE L2 2554 2661 -653 736 180 7 13 chr6 35566574 35566724 -146848518 + L1MB3 LINE L1 5683 5831 -340 830 147 0 22 chr6 35566724 35566850 -146848392 + FLAM_C SINE Alu 1 125 -187 1791 168 54 3 chr6 35566850 35567201 -146848041 + L1MB3 LINE L1 5813 6181 -2 257 195 168 121 chr6 35567210 35567272 -146847970 + MER5A DNA MER1_type 13 71 -118 2227 103 3 3 chr6 35567272 35567583 -146847659 + AluY SINE Alu 1 311 0 257 195 168 121 chr6 35567583 35567669 -146847573 + MER5A DNA MER1_type 71 168 -21 236 235 71 31 chr6 35569286 35569384 -146845858 + L2 LINE L2 2560 2661 -653 247 321 109 60 chr6 35569564 35569874 -146845368 + L2 LINE L2 2888 3220 -52 2525 224 63 0 chr6 35569874 35570449 -146844793 + MER90 LTR ERV1 4 614 0 247 321 109 60 chr6 35570449 35570505 -146844737 + L2 LINE L2 3220 3272 0 394 245 49 10 chr6 35570720 35570822 -146844420 + MER5A DNA MER1_type 4 109 -80 216 271 77 82 chr6 35572412 35572582 -146842660 + L2 LINE L2 2493 2661 -653 208 291 47 63 chr6 35572768 35572895 -146842347 + L2 LINE L2 2896 3020 -252 328 351 56 16 chr6 35573713 35573964 -146841278 + L1MB7 LINE L1 5564 5824 -297 2290 115 0 0 chr6 35574239 35574551 -146840691 + AluSx SINE Alu 1 312 0 2345 91 10 0 chr6 35575155 35575464 -146839778 + AluSp SINE Alu 1 312 -1 557 294 165 47 chr6 35575542 35575746 -146839496 - L1ME4a LINE L1 -3 6118 5939 2121 112 7 0 chr6 35575746 35576041 -146839201 - AluSx SINE Alu -15 297 1 557 294 165 47 chr6 35576041 35576200 -146839042 - L1ME4a LINE L1 -182 5939 5712 2216 71 7 0 chr6 35577876 35578200 -146837042 + AluY SINE Alu 1 326 0 2203 109 0 25 chr6 35578208 35578528 -146836714 + AluSx SINE Alu 1 312 0 265 272 71 112 chr6 35579223 35579305 -146835937 - MIR SINE MIR -81 181 108 2291 97 0 3 chr6 35579305 35579613 -146835629 - AluSx SINE Alu -3 309 3 265 272 71 112 chr6 35579613 35579699 -146835543 - MIR SINE MIR -154 108 20 757 279 5 0 chr6 35580362 35580552 -146834690 + L2 LINE L2 2884 3074 -239 328 239 49 84 chr6 35580559 35580713 -146834529 + L1MC5 LINE L1 7533 7676 -285 1971 118 6 29 chr6 35580713 35580908 -146834334 - AluSx SINE Alu -4 308 121 183 42 0 0 chr6 35580908 35580932 -146834310 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1971 118 6 29 chr6 35580932 35581051 -146834191 - AluSx SINE Alu -191 121 1 328 239 49 84 chr6 35581051 35581159 -146834083 + L1MC5 LINE L1 7676 7786 -175 1631 182 0 7 chr6 35581221 35581501 -146833741 + AluJo SINE Alu 11 288 -24 279 0 0 0 chr6 35581501 35581532 -146833710 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1274 198 67 0 chr6 35581549 35581877 -146833365 + L1MB7 LINE L1 5826 6175 -9 1752 145 14 21 chr6 35581893 35582304 -146832938 + AluJb SINE Alu 1 409 0 303 226 164 7 chr6 35582323 35582469 -146832773 + L1MC5 LINE L1 7787 7955 -6 668 215 71 18 chr6 35584350 35584575 -146830667 + L1ME1 LINE L1 5806 6047 -119 1939 122 40 14 chr6 35586687 35586983 -146828259 - AluSg SINE Alu 0 310 7 1597 202 39 30 chr6 35587484 35587805 -146827437 + Charlie4a DNA MER1_type 35 363 -1598 1990 100 71 4 chr6 35587805 35588085 -146827157 + AluSq SINE Alu 1 299 -14 1597 202 39 30 chr6 35588085 35588199 -146827043 + Charlie4a DNA MER1_type 363 474 -34 1917 102 40 30 chr6 35589136 35589440 -146825802 - AluSx SINE Alu -4 308 2 1597 273 157 23 chr6 35589609 35589804 -146825438 + L2 LINE L2 2208 2375 -938 2178 92 3 0 chr6 35589804 35590097 -146825145 - AluSp SINE Alu -19 294 1 1597 273 157 23 chr6 35590097 35590857 -146824385 + L2 LINE L2 2375 3313 0 269 300 51 87 chr6 35591700 35591817 -146823425 - MIR3 SINE MIR -58 150 95 2349 103 0 0 chr6 35591817 35592129 -146823113 + AluSx SINE Alu 1 312 0 269 300 51 87 chr6 35592129 35592221 -146823021 - MIR3 SINE MIR -113 95 1 2094 108 0 0 chr6 35592862 35593131 -146822111 + AluSx SINE Alu 1 269 -43 950 42 35 7 chr6 35593140 35593283 -146821959 + (GAAA)n Simple_repeat Simple_repeat 4 150 0 2186 112 3 6 chr6 35593294 35593607 -146821635 + AluSx SINE Alu 1 312 0 563 98 0 33 chr6 35593665 35593757 -146821485 - 5S rRNA rRNA -31 90 2 676 195 87 7 chr6 35593862 35594011 -146821231 - MIR SINE MIR -26 236 76 2473 74 0 0 chr6 35595327 35595638 -146819604 - AluY SINE Alu 0 311 1 882 225 43 10 chr6 35595639 35595848 -146819394 - MIR SINE MIR -46 216 1 732 318 5 5 chr6 35597524 35597719 -146817523 + MER91A DNA MER1_type 2 196 0 423 345 147 21 chr6 35597965 35598496 -146816746 + L2 LINE L2 1613 2210 -1104 1704 112 13 69 chr6 35598777 35599080 -146816162 - AluJo SINE Alu -16 296 11 300 324 71 19 chr6 35599266 35599476 -146815766 + L2 LINE L2 2849 3069 -203 24 77 0 0 chr6 35602740 35602792 -146812450 + GC_rich Low_complexity Low_complexity 1 52 0 219 109 43 43 chr6 35603041 35603087 -146812155 + (CTGGGG)n Simple_repeat Simple_repeat 1 46 0 864 217 48 10 chr6 35604656 35604863 -146810379 - MIR SINE MIR -20 242 28 324 319 53 18 chr6 35605235 35605348 -146809894 - L2 LINE L2 -9 3304 3188 2461 60 3 0 chr6 35606235 35606535 -146808707 - AluSp SINE Alu -12 301 1 2086 119 14 0 chr6 35606606 35606899 -146808343 - AluSq SINE Alu -16 297 1 1076 191 5 5 chr6 35607236 35607424 -146807818 - MER5A DNA MER1_type -1 188 1 1320 123 0 10 chr6 35607651 35607846 -146807396 + AluSq SINE Alu 121 313 0 368 335 41 46 chr6 35608291 35608488 -146806754 + L1ME4a LINE L1 5926 6121 0 559 282 120 53 chr6 35608751 35608932 -146806310 + L3 LINE CR1 466 633 -944 2016 126 0 19 chr6 35608932 35609249 -146805993 + AluJb SINE Alu 1 311 -1 559 282 120 53 chr6 35609249 35609425 -146805817 + L3 LINE CR1 633 847 -730 246 229 14 0 chr6 35609465 35609535 -146805707 + L1ME4a LINE L1 6045 6115 -6 556 277 125 40 chr6 35609658 35610034 -146805208 + L3 LINE CR1 1092 1499 -78 366 242 73 73 chr6 35612751 35612875 -146802367 + MER91A DNA MER1_type 70 193 -3 375 290 177 73 chr6 35613413 35613580 -146801662 + L2 LINE L2 2733 2881 -432 2213 93 3 0 chr6 35613580 35613903 -146801339 - AluSp SINE Alu 0 324 1 375 290 177 73 chr6 35613903 35614260 -146800982 + L2 LINE L2 2881 3313 0 2087 114 7 0 chr6 35614359 35614649 -146800593 - AluSx SINE Alu -14 298 7 606 196 23 60 chr6 35614653 35614786 -146800456 - FLAM_A SINE Alu -5 128 1 685 268 42 65 chr6 35614898 35615228 -146800014 + L1ME3 LINE L1 4759 5082 -1064 2122 126 0 0 chr6 35615228 35615529 -146799713 - AluSx SINE Alu -11 301 1 685 268 42 65 chr6 35615529 35615552 -146799690 + L1ME3 LINE L1 5082 5104 -1042 1855 164 10 6 chr6 35615570 35615881 -146799361 + AluJb SINE Alu 1 312 0 2168 96 16 0 chr6 35615924 35616227 -146799015 + AluSq SINE Alu 1 308 -5 301 246 26 70 chr6 35616227 35616332 -146798910 + L1ME3 LINE L1 5280 5381 -781 1190 129 29 43 chr6 35616346 35616421 -146798821 - AluSx SINE Alu -102 210 135 2198 86 3 3 chr6 35616421 35616713 -146798529 - AluY SINE Alu -19 292 1 1190 129 29 43 chr6 35616713 35616846 -146798396 - AluSx SINE Alu -177 135 5 1824 163 3 3 chr6 35616852 35617146 -146798096 - AluJo SINE Alu -16 296 3 1781 224 63 98 chr6 35617148 35617764 -146797478 + L1ME3 LINE L1 5372 5955 -207 2206 121 0 0 chr6 35617764 35618071 -146797171 + AluSc SINE Alu 1 307 -2 1781 224 63 98 chr6 35618071 35618261 -146796981 + L1ME3 LINE L1 5955 6150 -12 2185 103 0 40 chr6 35618263 35618584 -146796658 + AluSx SINE Alu 1 308 -4 421 316 77 37 chr6 35618589 35618850 -146796392 + L2 LINE L2 1715 1989 -1325 2250 98 3 3 chr6 35618850 35619155 -146796087 - AluSx SINE Alu -7 305 1 403 253 0 0 chr6 35619166 35619265 -146795977 + MER3 DNA MER1_type 35 133 -76 266 133 0 0 chr6 35619267 35619312 -146795930 + MER5B DNA MER1_type 119 163 -15 680 308 142 41 chr6 35619338 35619758 -146795484 + L2 LINE L2 2165 2541 -772 1947 152 0 7 chr6 35619758 35620061 -146795181 - AluJo SINE Alu -11 301 1 680 308 142 41 chr6 35620061 35620688 -146794554 + L2 LINE L2 2541 3313 0 1207 240 42 24 chr6 35620844 35621347 -146793895 + L1ME3A LINE L1 5535 6107 -63 214 318 45 8 chr6 35624540 35624672 -146790570 + C-rich Low_complexity Low_complexity 2 138 0 369 305 31 8 chr6 35627126 35627254 -146787988 - MIR3 SINE MIR -63 145 15 218 352 21 7 chr6 35627832 35627977 -146787265 + GA-rich Low_complexity Low_complexity 2 148 0 31 0 0 0 chr6 35628064 35628095 -146787147 + AT_rich Low_complexity Low_complexity 1 31 0 855 131 7 36 chr6 35628095 35628232 -146787010 + FLAM_C SINE Alu 1 133 0 373 303 125 7 chr6 35628964 35629116 -146786126 - MIR SINE MIR -74 188 19 1966 95 95 7 chr6 35629569 35629853 -146785389 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr6 35630411 35630433 -146784809 + AT_rich Low_complexity Low_complexity 1 22 0 228 305 9 19 chr6 35631097 35631202 -146784040 + GA-rich Low_complexity Low_complexity 4 107 0 2063 115 0 10 chr6 35633435 35633740 -146781502 + AluSx SINE Alu 1 302 -10 2314 79 0 3 chr6 35635218 35635522 -146779720 - AluY SINE Alu -8 303 1 42 0 0 0 chr6 35635522 35635564 -146779678 + AT_rich Low_complexity Low_complexity 1 42 0 2388 84 0 0 chr6 35635566 35635875 -146779367 - AluSx SINE Alu -3 309 1 2236 88 7 0 chr6 35636545 35636842 -146778400 + AluSp SINE Alu 1 299 -14 302 299 34 28 chr6 35637198 35637375 -146777867 + L2 LINE L2 2214 2391 -923 2331 60 10 3 chr6 35637691 35637990 -146777252 + AluY SINE Alu 1 301 -10 1920 143 0 25 chr6 35638062 35638377 -146776865 + AluSx SINE Alu 1 307 -5 1876 82 4 0 chr6 35638566 35638811 -146776431 - AluY SINE Alu -65 246 1 546 222 118 33 chr6 35638867 35639020 -146776222 + LTR33 LTR ERVL 3 168 -353 353 320 152 31 chr6 35639020 35639048 -146776194 + L2 LINE L2 2310 2333 -981 1863 122 20 14 chr6 35639048 35639343 -146775899 + AluSp SINE Alu 3 299 -14 353 320 152 31 chr6 35639343 35639801 -146775441 + L2 LINE L2 2333 2855 -459 321 302 31 128 chr6 35639834 35639974 -146775268 + L2 LINE L2 2971 3064 -208 2097 69 69 0 chr6 35639974 35640251 -146774991 - AluY SINE Alu -15 296 1 321 302 31 128 chr6 35640251 35640431 -146774811 + L2 LINE L2 3064 3260 -12 2120 112 0 3 chr6 35640603 35640898 -146774344 + AluSg SINE Alu 1 294 -16 1792 184 0 3 chr6 35641703 35642013 -146773229 + AluJo SINE Alu 4 312 0 1617 79 0 31 chr6 35645631 35645859 -146769383 + AluSg/x SINE Alu 90 310 0 1742 62 91 0 chr6 35645864 35646106 -146769136 + AluSq SINE Alu 1 264 -49 1751 93 4 8 chr6 35646110 35646380 -146768862 + AluSc SINE Alu 36 304 0 1940 82 11 14 chr6 35646381 35646431 -146768811 + AluY SINE Alu 1 50 -254 224 77 26 0 chr6 35646431 35646470 -146768772 + (CGGGG)n Simple_repeat Simple_repeat 3 42 0 1940 82 11 14 chr6 35646470 35646724 -146768518 + AluY SINE Alu 50 304 0 435 273 180 0 chr6 35647023 35647173 -146768069 - MER5A DNA MER1_type -1 188 12 878 120 8 15 chr6 35647180 35647313 -146767929 - FLAM_C SINE Alu 0 133 2 2136 121 0 0 chr6 35647705 35648011 -146767231 - AluSx SINE Alu -1 311 6 1554 66 20 0 chr6 35648012 35648208 -146767034 + AluSx SINE Alu 50 249 -63 1580 115 94 0 chr6 35648208 35648452 -146766790 + AluSg SINE Alu 42 308 -2 1940 109 4 0 chr6 35648686 35648953 -146766289 + AluSx SINE Alu 1 268 -44 2255 87 3 7 chr6 35649599 35649898 -146765344 + AluSq SINE Alu 1 298 -15 1329 134 42 0 chr6 35650218 35650435 -146764807 + AluJo SINE Alu 87 312 0 2181 99 0 0 chr6 35650830 35651160 -146764082 + AluSc SINE Alu 2 309 0 186 284 30 0 chr6 35651677 35651744 -146763498 - MIR SINE MIR -40 222 154 2107 115 0 10 chr6 35651785 35652090 -146763152 - AluSg SINE Alu -8 302 1 964 282 32 80 chr6 35652090 35652358 -146762884 - L2 LINE L2 -12 3301 3022 1631 182 0 4 chr6 35652358 35652638 -146762604 - AluJb SINE Alu -33 279 1 964 282 32 80 chr6 35652638 35653131 -146762111 - L2 LINE L2 -291 3022 2572 329 321 0 0 chr6 35653131 35653240 -146762002 - L2 LINE L2 -1162 2152 2044 1723 178 27 0 chr6 35653243 35653536 -146761706 - AluJb SINE Alu -10 302 2 449 229 0 29 chr6 35653559 35653700 -146761542 - L1PB4 LINE L1 0 6166 6029 2150 97 0 10 chr6 35653701 35654001 -146761241 - AluSx SINE Alu -15 297 1 1603 177 66 3 chr6 35654001 35654288 -146760954 - AluSx SINE Alu -6 306 1 614 133 0 29 chr6 35654291 35654370 -146760872 - L1PA15 LINE L1 -259 5906 5829 2337 97 0 0 chr6 35654370 35654680 -146760562 - AluSq SINE Alu -3 310 1 614 133 0 29 chr6 35654680 35654705 -146760537 - L1PA15 LINE L1 -336 5829 5805 614 225 89 35 chr6 35654707 35654876 -146760366 - MER20 DNA MER1_type -41 178 1 419 154 0 13 chr6 35654908 35654986 -146760256 + MER20 DNA MER1_type 142 218 -1 1095 246 55 113 chr6 35655009 35655160 -146760082 - PABL_B LTR ERV1 0 667 509 2367 87 0 0 chr6 35655160 35655460 -146759782 - AluSc SINE Alu -9 300 1 1095 246 55 113 chr6 35655460 35656016 -146759226 - PABL_B LTR ERV1 -158 509 1 607 264 153 8 chr6 35656017 35656271 -146758971 - L2 LINE L2 -1375 1939 1649 2295 77 24 0 chr6 35656348 35656645 -146758597 + AluSx SINE Alu 5 308 -4 1388 270 259 12 chr6 35656787 35657617 -146757625 - L2 LINE L2 -1605 1709 675 1744 148 9 49 chr6 35657624 35657761 -146757481 + AluSx SINE Alu 1 142 -170 2150 109 10 3 chr6 35657761 35658072 -146757170 + AluSq SINE Alu 1 313 0 2194 77 0 35 chr6 35658074 35658385 -146756857 + AluY SINE Alu 1 300 -11 1744 148 9 49 chr6 35658385 35658569 -146756673 + AluSx SINE Alu 143 312 0 770 122 8 16 chr6 35658578 35658695 -146756547 + FRAM SINE Alu 54 170 -1 2096 117 10 0 chr6 35658695 35659004 -146756238 + AluSq SINE Alu 1 312 -1 2323 82 0 0 chr6 35659245 35659539 -146755703 - AluY SINE Alu -17 294 1 420 139 38 13 chr6 35659952 35660031 -146755211 - MER5B DNA MER1_type -2 176 96 1382 167 29 78 chr6 35660031 35660190 -146755052 - AluJb SINE Alu -12 300 135 2193 112 0 0 chr6 35660190 35660494 -146754748 - AluSx SINE Alu -8 304 1 1829 57 4 4 chr6 35660502 35660732 -146754510 - AluY SINE Alu -8 303 74 1382 167 29 78 chr6 35660732 35660869 -146754373 - AluJb SINE Alu -184 128 10 498 233 0 0 chr6 35660877 35660980 -146754262 - MER5B DNA MER1_type -75 103 1 255 351 116 31 chr6 35661301 35661811 -146753431 - L2 LINE L2 -459 2855 2303 2200 93 3 0 chr6 35662273 35662564 -146752678 - AluSq SINE Alu -21 292 1 252 363 0 0 chr6 35662697 35662788 -146752454 + L2 LINE L2 3180 3270 -43 193 73 24 24 chr6 35665635 35665676 -146749566 + (CGG)n Simple_repeat Simple_repeat 2 42 0 198 103 0 0 chr6 35665896 35665925 -146749317 + (TGG)n Simple_repeat Simple_repeat 1 29 0 258 316 0 54 chr6 35666741 35666909 -146748333 + G-rich Low_complexity Low_complexity 4 162 0 225 163 0 0 chr6 35667070 35667119 -146748123 + G-rich Low_complexity Low_complexity 1 49 0 251 283 8 50 chr6 35670571 35670682 -146744560 + MIR SINE MIR 33 140 -122 213 108 0 0 chr6 35670682 35670719 -146744523 + (TG)n Simple_repeat Simple_repeat 1 37 0 2210 95 3 0 chr6 35671211 35671506 -146743736 - AluSx SINE Alu -16 296 1 1248 203 18 0 chr6 35671559 35671776 -146743466 - MER58A DNA MER1_type -2 222 2 749 250 82 23 chr6 35671780 35672000 -146743242 + MIR SINE MIR 27 259 -3 1849 134 14 14 chr6 35672000 35672292 -146742950 + AluSx SINE Alu 2 293 -19 1943 127 28 0 chr6 35672329 35672613 -146742629 - AluSx SINE Alu -20 292 1 651 192 73 0 chr6 35673261 35673412 -146741830 - L1MD3 LINE L1 -2 7993 7832 938 255 183 16 chr6 35673610 35674072 -146741170 - L2 LINE L2 -10 3303 2771 851 181 42 42 chr6 35674076 35674253 -146740989 - L1MB3 LINE L1 0 6183 6007 2310 83 7 0 chr6 35674253 35674553 -146740689 + AluSp SINE Alu 1 302 -11 198 0 0 0 chr6 35674553 35674575 -146740667 + (TA)n Simple_repeat Simple_repeat 2 23 0 851 181 42 42 chr6 35674575 35674634 -146740608 - L1MB3 LINE L1 -174 6009 5946 239 204 0 0 chr6 35674634 35674683 -146740559 - L2 LINE L2 -547 2767 2719 2176 106 3 3 chr6 35674818 35675121 -146740121 - AluY SINE Alu -8 303 1 2239 62 0 7 chr6 35675157 35675446 -146739796 - AluY SINE Alu -24 287 1 2070 98 17 0 chr6 35675490 35675785 -146739457 + AluSx SINE Alu 1 300 -12 409 218 6 51 chr6 35675798 35675837 -146739405 - L1MC4 LINE L1 0 8042 8003 1848 119 41 0 chr6 35675837 35676105 -146739137 + AluJb SINE Alu 20 298 -14 409 218 6 51 chr6 35676105 35676221 -146739021 - L1MC4 LINE L1 -39 8003 7894 298 222 148 0 chr6 35676282 35676390 -146738852 - L1MC4 LINE L1 -304 7738 7615 180 0 0 0 chr6 35676390 35676410 -146738832 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2066 94 7 0 chr6 35676414 35676690 -146738552 - AluSq SINE Alu -35 278 1 2129 88 17 0 chr6 35676690 35676985 -146738257 - AluSx SINE Alu -12 300 1 1069 61 0 0 chr6 35676987 35677119 -146738123 - AluSq/x SINE Alu -180 132 1 283 273 39 0 chr6 35677120 35677197 -146738045 - L1MC4 LINE L1 -560 7482 7403 2044 144 0 0 chr6 35677309 35677621 -146737621 - AluSx SINE Alu 0 312 1 2050 89 4 7 chr6 35679999 35680312 -146734930 - AluSg SINE Alu 0 312 1 2216 76 6 19 chr6 35680368 35680684 -146734558 + AluSx SINE Alu 1 312 0 189 0 0 0 chr6 35680714 35680735 -146734507 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1185 113 0 27 chr6 35680735 35680920 -146734322 + AluSp SINE Alu 134 313 0 188 345 0 0 chr6 35684937 35684992 -146730250 + MIR3 SINE MIR 146 200 -8 204 143 0 0 chr6 35686527 35686569 -146728673 + (CAG)n Simple_repeat Simple_repeat 3 44 0 413 311 130 34 chr6 35686899 35686949 -146728293 - MIR SINE MIR 0 262 218 1389 157 63 47 chr6 35686949 35687129 -146728113 + MER33 DNA MER1_type 2 191 -2394 2363 84 0 0 chr6 35687129 35687427 -146727815 + AluSg SINE Alu 1 298 -12 1389 157 63 47 chr6 35687427 35687564 -146727678 + MER33 DNA MER1_type 191 324 0 413 311 130 34 chr6 35687564 35687751 -146727491 - MIR SINE MIR -44 218 2 377 301 283 12 chr6 35688486 35688819 -146726423 + L2 LINE L2 2560 2980 -292 442 190 0 0 chr6 35688918 35688997 -146726245 + MER5A DNA MER1_type 60 138 -51 680 178 0 0 chr6 35689002 35689109 -146726133 - FLAM_C SINE Alu -36 107 1 383 172 16 0 chr6 35689109 35689173 -146726069 + MER5A DNA MER1_type 125 189 0 376 290 145 8 chr6 35689188 35689319 -146725923 + L2 LINE L2 3161 3309 -4 201 307 6 50 chr6 35690728 35690907 -146724335 + C-rich Low_complexity Low_complexity 2 172 0 2151 100 3 50 chr6 35696809 35697130 -146718112 - AluSp SINE Alu -7 306 1 180 0 0 0 chr6 35700704 35700724 -146714518 + (CCA)n Simple_repeat Simple_repeat 3 22 0 243 79 0 0 chr6 35700724 35700762 -146714480 + (CAA)n Simple_repeat Simple_repeat 1 38 0 597 177 65 24 chr6 35702567 35702691 -146712551 - FLAM_A SINE Alu -4 129 1 21 57 0 0 chr6 35704958 35704993 -146710249 + GC_rich Low_complexity Low_complexity 1 35 0 237 115 33 33 chr6 35705276 35705337 -146709905 + GA-rich Low_complexity Low_complexity 3 63 0 315 318 0 38 chr6 35705342 35705474 -146709768 + G-rich Low_complexity Low_complexity 3 129 0 229 283 0 0 chr6 35708218 35708271 -146706971 + L2 LINE L2 3255 3307 -6 2130 115 3 3 chr6 35708312 35708616 -146706626 + AluSx SINE Alu 1 304 -8 801 169 15 0 chr6 35708751 35708881 -146706361 + AluJb SINE Alu 176 307 -5 416 241 247 0 chr6 35709054 35709216 -146706026 + MIR SINE MIR 61 262 0 2135 140 33 9 chr6 35709390 35709719 -146705523 - MER1B DNA MER1_type 0 337 1 349 130 19 0 chr6 35710092 35710146 -146705096 + L2 LINE L2 3246 3300 -13 233 194 15 75 chr6 35712803 35712870 -146702372 + MIR SINE MIR 82 144 -64 2553 52 0 0 chr6 35712907 35713215 -146702027 - AluY SINE Alu -3 308 1 930 177 55 11 chr6 35713218 35713399 -146701843 - MER5A DNA MER1_type 0 189 1 605 158 41 94 chr6 35714290 35714379 -146700863 + MIR SINE MIR 74 166 -96 1844 155 7 23 chr6 35714379 35714517 -146700725 + AluSx SINE Alu 1 140 -172 2225 92 0 0 chr6 35714517 35714831 -146700411 + AluY SINE Alu 1 314 0 1844 155 7 23 chr6 35714831 35715000 -146700242 + AluSx SINE Alu 140 304 -8 1351 112 79 0 chr6 35715000 35715215 -146700027 + MER46A DNA MER2_type 3 234 -2 605 158 41 94 chr6 35715215 35715295 -146699947 + MIR SINE MIR 164 235 -27 2353 83 3 0 chr6 35715306 35715608 -146699634 - AluY SINE Alu -8 303 1 220 293 80 0 chr6 35717785 35717860 -146697382 - MIR3 SINE MIR -4 204 124 227 329 0 0 chr6 35717867 35717940 -146697302 + L1ME LINE L1 5777 5849 -321 2246 96 7 0 chr6 35718002 35718303 -146696939 - AluSp SINE Alu -10 303 1 387 333 47 0 chr6 35719797 35719926 -146695316 - L2 LINE L2 -1 3271 3137 421 258 43 63 chr6 35719947 35720161 -146695081 - MIR SINE MIR -44 164 1 2433 84 0 0 chr6 35720367 35720677 -146694565 + AluSg SINE Alu 1 310 0 2159 99 0 30 chr6 35720847 35721149 -146694093 + AluSx SINE Alu 1 293 -19 6506 140 35 25 chr6 35721160 35722021 -146693221 + L1MA4 LINE L1 3984 4835 -1465 2322 87 7 3 chr6 35722021 35722330 -146692912 - AluSg SINE Alu 0 310 1 6506 140 35 25 chr6 35722330 35722443 -146692799 + L1MA4 LINE L1 4835 4945 -1355 2106 107 0 44 chr6 35722443 35722761 -146692481 + AluSq SINE Alu 1 304 -9 6506 140 35 25 chr6 35722761 35722847 -146692395 + L1MA4 LINE L1 4945 5029 -1271 1764 108 90 7 chr6 35722847 35723124 -146692118 + AluSg SINE Alu 1 300 -10 6506 140 35 25 chr6 35723124 35723550 -146691692 + L1MA4 LINE L1 5029 5449 -851 1982 159 0 3 chr6 35723550 35723858 -146691384 + AluSx SINE Alu 1 307 -5 6506 140 35 25 chr6 35723858 35724278 -146690964 + L1MA4 LINE L1 5449 5920 -380 2196 122 42 50 chr6 35724364 35724702 -146690540 + L1MA4 LINE L1 5903 6239 -61 2040 130 10 3 chr6 35724702 35725009 -146690233 + AluSx SINE Alu 3 311 -1 2196 122 42 50 chr6 35725009 35725071 -146690171 + L1MA4 LINE L1 6239 6300 0 221 286 91 0 chr6 35725102 35725179 -146690063 + MIR SINE MIR 14 97 -165 * 692 339 79 20 chr6 35725173 35725754 -146689488 - L2 LINE L2 -183 3089 2468 1977 118 0 4 chr6 35726078 35726388 -146688854 + AluSg SINE Alu 1 309 0 1985 101 21 31 chr6 35726408 35726745 -146688497 + AluSx SINE Alu 1 334 0 869 209 99 9 chr6 35728481 35728692 -146686550 - AluJb SINE Alu -1 311 82 243 235 20 0 chr6 35728975 35729077 -146686165 + CT-rich Low_complexity Low_complexity 1 103 0 368 295 43 43 chr6 35729494 35729567 -146685675 + L2 LINE L2 3087 3159 -154 456 67 0 0 chr6 35729567 35729627 -146685615 + (TA)n Simple_repeat Simple_repeat 2 61 0 368 295 43 43 chr6 35729627 35729760 -146685482 + L2 LINE L2 3158 3293 -20 2055 104 7 0 chr6 35729760 35730038 -146685204 - AluSx SINE Alu -17 295 16 287 372 16 0 chr6 35730771 35730900 -146684342 + L2 LINE L2 2879 3009 -263 213 341 148 70 chr6 35730935 35730965 -146684277 + L2 LINE L2 2967 2993 -279 2226 117 0 13 chr6 35730965 35731144 -146684098 - AluSx SINE Alu 0 312 137 2025 93 0 0 chr6 35731144 35731413 -146683829 - AluY SINE Alu -8 303 35 2226 117 0 13 chr6 35731413 35731549 -146683693 - AluSx SINE Alu -175 137 1 213 341 148 70 chr6 35731549 35731802 -146683440 + L2 LINE L2 2993 3272 0 234 261 15 0 chr6 35731908 35731973 -146683269 + MER91B DNA MER1_type 12 77 -113 828 253 10 10 chr6 35732549 35732747 -146682495 + MIR SINE MIR 64 261 -1 1001 227 100 0 chr6 35733922 35734142 -146681100 + MIR SINE MIR 2 243 -19 292 202 228 35 chr6 35734425 35734539 -146680703 + MER91C DNA MER1_type 3 138 -2 398 235 51 10 chr6 35736749 35736847 -146678395 + MIR SINE MIR 38 139 -69 541 304 32 23 chr6 35736917 35737137 -146678105 - MIR SINE MIR -33 229 8 301 262 41 35 chr6 35737966 35738111 -146677131 + CT-rich Low_complexity Low_complexity 2 147 0 261 0 0 0 chr6 35739004 35739033 -146676209 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2152 215 45 28 chr6 35740168 35740646 -146674596 - L1MC4 LINE L1 0 8042 7551 1894 105 59 3 chr6 35740646 35740932 -146674310 - AluSq SINE Alu -11 302 1 2152 215 45 28 chr6 35740932 35741029 -146674213 - L1MC4 LINE L1 -491 7551 7457 862 175 6 23 chr6 35741145 35741316 -146673926 - FRAM SINE Alu -16 160 1 2021 106 33 13 chr6 35741360 35741663 -146673579 - AluSx SINE Alu -1 311 3 606 284 88 64 chr6 35741665 35742053 -146673189 - L1ME LINE L1 -414 5707 5311 1682 166 3 3 chr6 35742918 35743214 -146672028 + AluJb SINE Alu 9 304 -8 2429 212 144 71 chr6 35743283 35743734 -146671508 + L2 LINE L2 2052 2469 -844 2705 16 0 0 chr6 35743734 35744039 -146671203 + AluYb8 SINE Alu 1 305 -13 2429 212 144 71 chr6 35744039 35744330 -146670912 + L2 LINE L2 2469 2737 -576 1979 108 27 0 chr6 35744330 35744626 -146670616 - AluY SINE Alu -3 308 5 2429 212 144 71 chr6 35744626 35744989 -146670253 + L2 LINE L2 2737 3239 -74 230 278 308 20 chr6 35745398 35745596 -146669646 - L2 LINE L2 -5 3308 3054 1805 146 11 0 chr6 35745597 35745877 -146669365 + AluSx SINE Alu 1 283 -29 2463 87 0 0 chr6 35745877 35746189 -146669053 + AluSx SINE Alu 1 312 0 281 286 9 71 chr6 35746272 35746384 -146668858 + L2 LINE L2 2585 2689 -625 702 238 65 0 chr6 35746507 35746675 -146668567 - LTR16A LTR ERVL -186 264 86 2072 190 7 14 chr6 35746679 35747110 -146668132 + L1MB7 LINE L1 2601 3028 -3118 681 189 6 47 chr6 35747108 35747277 -146667965 + L1MB7 LINE L1 4963 5124 -1022 * 1091 158 5 68 chr6 35747282 35747503 -146667739 - AluJo SINE Alu -19 293 87 413 127 14 0 chr6 35747510 35747581 -146667661 + L1MB7 LINE L1 5127 5198 -948 2089 139 7 0 chr6 35747581 35747891 -146667351 + AluSx SINE Alu 1 312 0 912 152 78 29 chr6 35747940 35748144 -146667098 + L1MB7 LINE L1 5182 5395 -751 * 1585 179 92 46 chr6 35748139 35748491 -146666751 - L1MDa LINE L1 -4882 1658 1281 2109 113 7 3 chr6 35748491 35748800 -146666442 - AluSq SINE Alu -3 310 1 1585 179 92 46 chr6 35748800 35748883 -146666359 - L1MDa LINE L1 -5259 1281 1203 993 114 49 204 chr6 35748885 35749114 -146666128 - AluJb SINE Alu -2 310 139 276 30 0 0 chr6 35749114 35749147 -146666095 + (TTA)n Simple_repeat Simple_repeat 2 34 0 993 114 49 204 chr6 35749147 35749225 -146666017 - AluJb SINE Alu -173 139 51 2051 139 0 0 chr6 35749256 35749551 -146665691 - AluSx SINE Alu -17 295 1 2041 122 3 0 chr6 35749559 35749853 -146665389 - AluSx SINE Alu -17 295 1 2262 211 106 28 chr6 35749855 35750811 -146664431 - L1MDa LINE L1 -5315 1228 34 2688 181 31 53 chr6 35750823 35750920 -146664322 + L1MB7 LINE L1 5571 5669 -515 2375 88 0 0 chr6 35750920 35751228 -146664014 + AluSp SINE Alu 1 308 -5 2688 181 31 53 chr6 35751228 35751355 -146663887 + L1MB7 LINE L1 5669 5797 -387 1981 97 0 8 chr6 35751355 35751622 -146663620 + AluSx SINE Alu 37 301 -11 2688 181 31 53 chr6 35751622 35751964 -146663278 + L1MB7 LINE L1 5797 6125 -59 2145 108 0 0 chr6 35751964 35752259 -146662983 - AluSx SINE Alu -17 295 1 2688 181 31 53 chr6 35752259 35752307 -146662935 + L1MB7 LINE L1 6125 6173 -11 260 284 43 17 chr6 35752307 35752423 -146662819 - L2 LINE L2 -1490 1824 1706 901 228 93 36 chr6 35752440 35752527 -146662715 - L1MC5 LINE L1 -47 7914 7833 1825 117 29 4 chr6 35752527 35752800 -146662442 + AluSx SINE Alu 16 295 -17 901 228 93 36 chr6 35752800 35752867 -146662375 - L1MC5 LINE L1 -128 7833 7771 339 25 0 0 chr6 35752867 35752907 -146662335 + (ATATG)n Simple_repeat Simple_repeat 2 41 0 901 228 93 36 chr6 35752907 35753137 -146662105 - L1MC5 LINE L1 -190 7771 7507 2002 180 5 34 chr6 35753141 35753312 -146661930 - L1MD2 LINE L1 -1 7765 7591 2279 100 0 0 chr6 35753312 35753613 -146661629 + AluSx SINE Alu 1 301 -11 2002 180 5 34 chr6 35753613 35753695 -146661547 - L1MD2 LINE L1 -175 7591 7508 2041 109 7 7 chr6 35753695 35753998 -146661244 - AluSq SINE Alu -10 303 1 2002 180 5 34 chr6 35753998 35754178 -146661064 - L1MD2 LINE L1 -258 7508 6198 1817 212 127 31 chr6 35754186 35754926 -146660316 - L1MC5 LINE L1 -466 7495 6685 1846 264 184 29 chr6 35754945 35755129 -146660113 - L2 LINE L2 -1605 1709 1555 2110 120 7 0 chr6 35755129 35755437 -146659805 + AluSx SINE Alu 1 310 -2 1846 264 184 29 chr6 35755437 35756275 -146658967 - L2 LINE L2 -1759 1555 529 2101 136 0 0 chr6 35756569 35756871 -146658371 - AluSx SINE Alu -10 302 1 271 204 139 74 chr6 35757245 35757353 -146657889 - MIR3 SINE MIR -12 196 82 216 0 0 0 chr6 35757522 35757546 -146657696 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 1368 62 0 0 chr6 35757547 35757726 -146657516 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 278 190 7 70 chr6 35757820 35757904 -146657338 + MIR SINE MIR 83 162 -46 212 234 0 0 chr6 35758363 35758410 -146656832 + (TG)n Simple_repeat Simple_repeat 2 48 0 205 318 27 9 chr6 35758542 35758652 -146656590 + G-rich Low_complexity Low_complexity 1 112 0 191 167 24 24 chr6 35759071 35759113 -146656129 - L2 LINE L2 -95 3177 3136 194 139 28 0 chr6 35759200 35759236 -146656006 + L2 LINE L2 2242 2278 -1036 693 183 92 134 chr6 35759467 35759773 -146655469 + MLT1A1 LTR MaLR 3 295 -70 833 109 0 0 chr6 35759778 35759897 -146655345 - AluSx SINE Alu 0 309 191 1161 58 0 0 chr6 35759898 35760036 -146655206 - AluSx SINE Alu -171 141 4 308 200 0 0 chr6 35760407 35760467 -146654775 - Charlie7 DNA MER1_type 0 2612 2553 300 312 70 3 chr6 35760668 35760850 -146654392 + MIR SINE MIR 45 238 -24 2179 112 0 0 chr6 35761518 35761814 -146653428 + AluSx SINE Alu 1 296 -16 530 255 0 27 chr6 35761869 35762018 -146653224 + LTR41 LTR ERVL 10 154 -619 2250 87 3 0 chr6 35762055 35762344 -146652898 - AluSx SINE Alu -22 290 1 2575 171 19 32 chr6 35762402 35763331 -146651911 + MER41-int LTR ERV1 4 1482 -4464 4299 138 50 42 chr6 35763389 35764203 -146651039 + MER41-int LTR ERV1 767 2265 -2615 1956 164 44 109 chr6 35764218 35764675 -146650567 + MER41-int LTR ERV1 2989 3415 -4122 1811 138 45 3 chr6 35764727 35765017 -146650225 - AluJo SINE Alu -10 302 1 970 158 34 118 chr6 35765069 35765380 -146649862 + MER41-int LTR ERV1 1027 1362 -4584 609 83 0 0 chr6 35765380 35765464 -146649778 + (TA)n Simple_repeat Simple_repeat 2 85 0 2049 121 0 0 chr6 35765464 35765746 -146649496 - AluSc SINE Alu -27 282 1 970 158 34 118 chr6 35765746 35765878 -146649364 + MER41-int LTR ERV1 1360 3005 -2941 2152 114 0 7 chr6 35766492 35766800 -146648442 + AluSg SINE Alu 1 306 -4 639 284 95 6 chr6 35766972 35767141 -146648101 + MER5A DNA MER1_type 5 188 -1 383 261 144 18 chr6 35767454 35767565 -146647677 + MER5A DNA MER1_type 64 188 -1 200 332 39 43 chr6 35767899 35768107 -146647135 - L2 LINE L2 -2275 1039 833 501 206 123 44 chr6 35768131 35768447 -146646795 + HAL1 LINE L1 863 1203 -1304 * 598 280 65 39 chr6 35768446 35768782 -146646460 - L1M4 LINE L1 -1835 4311 3967 1955 117 3 3 chr6 35768782 35769097 -146646145 - AluSq SINE Alu 0 315 1 1585 175 60 30 chr6 35769133 35769464 -146645778 + MER58B DNA MER1_type 1 341 0 335 259 7 58 chr6 35769892 35770078 -146645164 + G-rich Low_complexity Low_complexity 1 176 0 302 351 6 23 chr6 35770241 35770415 -146644827 + G-rich Low_complexity Low_complexity 5 175 0 2372 190 0 14 chr6 35770763 35771178 -146644064 - L1PA12 LINE L1 -7166 415 7 1328 258 71 0 chr6 35771190 35771624 -146643618 - L1M4 LINE L1 -1400 4746 4282 1038 234 86 9 chr6 35771638 35771963 -146643279 - L1MDa LINE L1 -4625 1781 1432 1249 155 0 15 chr6 35771973 35772179 -146643063 + AluJb SINE Alu 82 284 -28 271 280 0 9 chr6 35772208 35772315 -146642927 - L1MDa LINE L1 -4995 1414 1309 * 32631 108 20 49 chr6 35772299 35776945 -146638297 - L1PA7 LINE L1 0 6154 1762 2335 75 0 0 chr6 35776945 35777239 -146638003 - AluY SINE Alu -13 298 5 32631 108 20 49 chr6 35777239 35778949 -146636293 - L1PA7 LINE L1 -4392 1762 3 726 185 17 6 chr6 35778961 35779139 -146636103 - L1MDa LINE L1 -5065 1341 1162 563 53 0 85 chr6 35779141 35779235 -146636007 - L1PA11 LINE L1 0 6174 6089 7734 29 2 0 chr6 35779310 35780456 -146634786 - L1PA4 LINE L1 0 6155 5007 4279 26 37 0 chr6 35780456 35780964 -146634278 + L1PA4 LINE L1 4490 5016 -1130 1142 255 47 15 chr6 35780960 35781368 -146633874 - L1MDa LINE L1 -5235 1174 754 * 2200 94 0 16 chr6 35781455 35781762 -146633480 - AluSc SINE Alu -7 302 1 225 0 0 0 chr6 35781762 35781787 -146633455 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 866 139 0 0 chr6 35781807 35781936 -146633306 - AluSg/x SINE Alu -47 263 135 621 259 199 41 chr6 35782161 35782554 -146632688 + L1ME4a LINE L1 5665 6119 -2 268 336 92 30 chr6 35782828 35783090 -146632152 + L2 LINE L2 2688 2965 -349 311 387 95 15 chr6 35783294 35783568 -146631674 - L2 LINE L2 -4 3268 2973 2279 92 0 35 chr6 35783806 35784122 -146631120 - AluY SINE Alu -6 305 1 2262 110 3 0 chr6 35784570 35784869 -146630373 - AluSg SINE Alu -10 300 1 2291 85 3 3 chr6 35784874 35785167 -146630075 - AluY SINE Alu -18 293 1 243 0 0 0 chr6 35785211 35785238 -146630004 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 647 200 9 0 chr6 35785241 35785351 -146629891 - FLAM_A SINE Alu -18 115 5 1829 103 4 12 chr6 35785643 35785896 -146629346 - AluSq SINE Alu -8 305 55 300 167 0 17 chr6 35785939 35785999 -146629243 - AluJ/FLAM SINE Alu -243 59 1 12858 188 13 13 chr6 35786115 35789154 -146626088 + L1PB1 LINE L1 2420 5459 -692 4497 105 18 1 chr6 35789718 35790382 -146624860 + L1PB1 LINE L1 5476 6150 -1 387 203 24 107 chr6 35790423 35790550 -146624692 - L1MDa LINE L1 -3980 2560 2450 1666 184 14 0 chr6 35790550 35790838 -146624404 - AluJb SINE Alu -20 292 1 387 203 24 107 chr6 35790838 35790879 -146624363 - L1MDa LINE L1 -4090 2450 2407 2582 110 49 53 chr6 35790986 35791492 -146623750 - L1MA8 LINE L1 -6 6285 5780 552 68 0 0 chr6 35791492 35791565 -146623677 + (TA)n Simple_repeat Simple_repeat 2 74 0 2582 110 49 53 chr6 35791565 35791584 -146623658 - L1MA8 LINE L1 -511 5780 5762 1331 190 61 82 chr6 35791584 35792017 -146623225 - MER66A LTR ERV1 0 478 110 859 37 0 0 chr6 35792080 35792187 -146623055 - MER66A-int LTR ERV1 0 6676 6570 2275 104 149 8 chr6 35792187 35792562 -146622680 + MSTA LTR MaLR 1 428 0 353 98 0 0 chr6 35792562 35792613 -146622629 + MSTA-int LTR MaLR 1 51 -1600 646 251 95 40 chr6 35792729 35793266 -146621976 + L1MC4a LINE L1 948 1409 -4722 2023 148 0 19 chr6 35793328 35793646 -146621596 + AluSx SINE Alu 1 312 0 11523 121 7 22 chr6 35794116 35795367 -146619875 + L1PA8 LINE L1 8 1276 -5185 2135 125 27 0 chr6 35795367 35795662 -146619580 + AluSg SINE Alu 1 303 -7 11523 121 7 22 chr6 35795662 35797277 -146617965 + L1PA8 LINE L1 1276 2852 -3609 13507 96 16 0 chr6 35797277 35800022 -146615220 + L1PA8 LINE L1 3716 6487 0 465 298 103 55 chr6 35800153 35800677 -146614565 + L1MC4a LINE L1 4211 4759 -1370 286 214 27 98 chr6 35800677 35800789 -146614453 - MER106B DNA MER1_type -50 1009 906 285 29 0 0 chr6 35800789 35800823 -146614419 + L1P LINE L1 4269 4302 -1844 264 271 0 0 chr6 35800873 35800943 -146614299 - MER106B DNA MER1_type -989 70 1 340 299 75 35 chr6 35800943 35801144 -146614098 + L1MC4a LINE L1 4862 5070 -1059 252 0 0 0 chr6 35801148 35801176 -146614066 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3845 123 40 0 chr6 35801178 35801685 -146613557 - L1PA16 LINE L1 -1 6165 5627 249 33 0 0 chr6 35801685 35801715 -146613527 + (TA)n Simple_repeat Simple_repeat 1 30 0 3845 123 40 0 chr6 35801715 35801827 -146613415 - L1PA16 LINE L1 -539 5627 5521 1020 268 177 14 chr6 35801932 35802383 -146612859 - L2 LINE L2 -1 3312 2936 1683 143 29 25 chr6 35802383 35802694 -146612548 + AluJo SINE Alu 1 312 0 1020 268 177 14 chr6 35802694 35802960 -146612282 - L2 LINE L2 -377 2936 2469 933 275 85 44 chr6 35802995 35803628 -146611614 + L1MC4a LINE L1 5268 5775 -370 2318 94 7 0 chr6 35804183 35804481 -146610761 - AluSg SINE Alu -10 300 1 2072 93 7 0 chr6 35805288 35805558 -146609684 + AluSx SINE Alu 1 272 -40 203 152 0 0 chr6 35805811 35805844 -146609398 + CT-rich Low_complexity Low_complexity 2 34 0 432 283 332 27 chr6 35806173 35806580 -146608662 - L3 LINE CR1 -2 1575 1045 25 51 0 0 chr6 35806590 35806629 -146608613 + AT_rich Low_complexity Low_complexity 1 39 0 263 319 228 11 chr6 35806740 35807025 -146608217 + L2 LINE L2 1875 2221 -1093 217 294 35 12 chr6 35807767 35807852 -146607390 + L2 LINE L2 3197 3283 -30 228 307 0 39 chr6 35808280 35808407 -146606835 + T-rich Low_complexity Low_complexity 3 124 0 1031 241 45 20 chr6 35809700 35809945 -146605297 - MIR SINE MIR 0 262 12 2201 118 0 34 chr6 35810273 35810595 -146604647 + AluSx SINE Alu 1 311 -1 801 196 136 18 chr6 35810731 35810951 -146604291 + MIR SINE MIR 17 262 0 2573 66 3 0 chr6 35811060 35811365 -146603877 - AluSp SINE Alu -7 306 1 180 0 0 0 chr6 35811802 35811822 -146603420 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 24 32 0 0 chr6 35812585 35812616 -146602626 + AT_rich Low_complexity Low_complexity 1 31 0 896 101 7 43 chr6 35812999 35813137 -146602105 + FLAM_C SINE Alu 1 133 0 2262 105 7 0 chr6 35813519 35813813 -146601429 + AluSq SINE Alu 1 296 -17 651 283 74 13 chr6 35814318 35814548 -146600694 + MIR SINE MIR 3 246 -16 886 135 0 0 chr6 35814858 35814984 -146600258 + FLAM_C SINE Alu 1 126 -7 1899 133 17 23 chr6 35816250 35816550 -146598692 - AluJb SINE Alu -14 298 1 1675 150 35 24 chr6 35816657 35816944 -146598298 + AluJo SINE Alu 6 295 -17 1051 192 104 0 chr6 35817111 35817178 -146598064 + MER58B DNA MER1_type 33 92 -2328 387 0 0 0 chr6 35817178 35817221 -146598021 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1051 192 104 0 chr6 35817221 35817396 -146597846 + MER58B DNA MER1_type 92 302 -39 1999 155 3 7 chr6 35817396 35817700 -146597542 + AluJo SINE Alu 1 303 -9 921 289 72 38 chr6 35818065 35818441 -146596801 + L2 LINE L2 2623 3010 -303 983 196 53 46 chr6 35818441 35818875 -146596367 - L1MEd LINE L1 -3555 2985 2552 361 127 25 0 chr6 35819359 35819438 -146595804 + GA-rich Low_complexity Low_complexity 2 82 0 4171 75 49 8 chr6 35820213 35820823 -146594419 + PABL_A LTR ERV1 1 635 -25 1600 96 0 0 chr6 35820823 35821021 -146594221 - AluSx SINE Alu -114 198 1 874 219 46 63 chr6 35821440 35821791 -146593451 + MER87 LTR ERV1 196 540 -1 213 121 0 0 chr6 35821948 35821981 -146593261 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 406 296 26 15 chr6 35822430 35822694 -146592548 - L1MEc LINE L1 -3141 3241 2975 2183 131 3 0 chr6 35823003 35823300 -146591942 - AluSq SINE Alu -15 298 1 21 82 0 0 chr6 35823386 35823435 -146591807 + AT_rich Low_complexity Low_complexity 1 49 0 303 348 27 39 chr6 35823435 35823558 -146591684 - L1MEc LINE L1 -4079 2484 2361 2654 7 0 0 chr6 35823558 35823844 -146591398 + AluYa5 SINE Alu 17 302 -9 303 348 27 39 chr6 35823844 35823976 -146591266 - L1MEc LINE L1 -4202 2361 2232 338 145 0 14 chr6 35824146 35824173 -146591069 + (TTCTCC)n Simple_repeat Simple_repeat 5 31 -41 1797 172 26 0 chr6 35824173 35824475 -146590767 - AluJb SINE Alu -2 310 1 338 145 0 14 chr6 35824475 35824516 -146590726 + (TTCTCC)n Simple_repeat Simple_repeat 31 72 0 351 335 27 8 chr6 35824627 35824826 -146590416 - L1MEc LINE L1 -845 1898 1543 2850 117 29 22 chr6 35824829 35825318 -146589924 - L1MA3 LINE L1 0 6305 5814 413 268 75 114 chr6 35825329 35825876 -146589366 - L1MEd LINE L1 -962 1939 1283 231 36 0 0 chr6 35825958 35825986 -146589256 + (TA)n Simple_repeat Simple_repeat 2 29 0 732 316 117 7 chr6 35826125 35826562 -146588680 + L2 LINE L2 1821 2305 -1009 1369 282 120 34 chr6 35827813 35828636 -146586606 + L2 LINE L2 2325 3309 -4 435 235 15 37 chr6 35830085 35830221 -146585021 + MER102b DNA MER1_type 205 337 -4 1962 129 4 0 chr6 35830482 35830782 -146584460 + AluSx SINE Alu 1 301 0 867 89 73 0 chr6 35832018 35832141 -146583101 + AluY SINE Alu 1 132 -179 5687 111 20 3 chr6 35832258 35833665 -146581577 + L1PA13 LINE L1 4739 6161 -2 1981 138 15 50 chr6 35833743 35834140 -146581102 + L1MB8 LINE L1 5791 6173 -5 1362 283 122 34 chr6 35834272 35835093 -146580149 + L2 LINE L2 2325 3309 -4 3506 106 23 0 chr6 35835894 35836414 -146578828 - L1PA13 LINE L1 -5 6158 5627 422 254 110 21 chr6 35837039 35837258 -146577984 + MER102a DNA MER1_type 92 326 -4 21 36 0 0 chr6 35838179 35838207 -146577035 + AT_rich Low_complexity Low_complexity 1 28 0 216 303 230 6 chr6 35838438 35838616 -146576626 + MIR SINE MIR 44 261 -1 297 381 0 0 chr6 35841028 35841196 -146574046 + (TGG)n Simple_repeat Simple_repeat 1 168 0 1679 123 110 48 chr6 35842872 35843027 -146572215 - AluSx SINE Alu -2 310 166 2175 71 3 52 chr6 35843027 35843335 -146571907 - AluY SINE Alu -18 293 1 1679 123 110 48 chr6 35843335 35843471 -146571771 - AluSx SINE Alu -146 166 1 2261 95 0 16 chr6 35843474 35843645 -146571597 - AluSg SINE Alu -9 301 136 2290 113 0 3 chr6 35843645 35843946 -146571296 - AluSx SINE Alu -12 300 1 2261 95 0 16 chr6 35843946 35844080 -146571162 - AluSg SINE Alu -174 136 1 596 176 9 0 chr6 35844133 35844241 -146571001 - L1PB4 LINE L1 -14 6142 6034 338 245 65 125 chr6 35844804 35844988 -146570254 + L2 LINE L2 3097 3269 -3 342 0 0 0 chr6 35845865 35845903 -146569339 + (CA)n Simple_repeat Simple_repeat 2 39 0 2083 95 25 7 chr6 35845908 35846191 -146569051 - AluSx SINE Alu -24 288 1 3195 89 22 0 chr6 35846671 35847121 -146568121 + LTR46 LTR ERV1 1 460 0 1739 175 7 11 chr6 35847818 35848137 -146567105 - AluJo SINE Alu 0 318 1 2091 106 0 11 chr6 35848229 35848512 -146566730 - AluSg SINE Alu -6 304 25 305 253 27 73 chr6 35849745 35849895 -146565347 + MIR SINE MIR 109 251 -11 2282 102 0 3 chr6 35849976 35850279 -146564963 + AluY SINE Alu 1 302 -9 31 44 0 0 chr6 35850713 35850758 -146564484 + AT_rich Low_complexity Low_complexity 1 45 0 510 89 13 0 chr6 35851668 35851747 -146563495 + L1PA16 LINE L1 6078 6157 -9 32 0 0 0 chr6 35852065 35852097 -146563145 + AT_rich Low_complexity Low_complexity 1 32 0 255 61 0 0 chr6 35852889 35852922 -146562320 + (CA)n Simple_repeat Simple_repeat 1 33 0 445 192 0 13 chr6 35852942 35853020 -146562222 - AluJ/FLAM SINE Alu -235 77 1 520 205 186 31 chr6 35853411 35853572 -146561670 - MER5A DNA MER1_type 0 189 4 483 100 12 0 chr6 35854715 35854795 -146560447 + L1MA5 LINE L1 6215 6295 -5 338 294 33 0 chr6 35854992 35855084 -146560158 + MIR SINE MIR 58 152 -56 371 282 70 19 chr6 35855829 35855985 -146559257 + MER117 DNA MER1_type 34 197 0 2135 130 7 0 chr6 35856020 35856321 -146558921 - AluSx SINE Alu -9 303 1 231 281 45 22 chr6 35856713 35856802 -146558440 - MER102a DNA MER1_type -239 91 1 1943 129 38 0 chr6 35857392 35857679 -146557563 - AluSx SINE Alu -14 298 1 487 269 9 0 chr6 35857755 35857863 -146557379 - MIR SINE MIR -149 113 5 216 325 98 26 chr6 35858045 35858310 -146556932 - L2 LINE L2 -1568 1746 1463 32 0 0 0 chr6 35859302 35859334 -146555908 + AT_rich Low_complexity Low_complexity 1 32 0 1365 40 0 40 chr6 35859334 35859510 -146555732 - L1PA3 LINE L1 -3 6152 5984 1558 180 22 7 chr6 35860095 35860373 -146554869 - AluJo SINE Alu -30 282 1 521 274 158 0 chr6 35860686 35860876 -146554366 + MIR SINE MIR 39 258 -4 424 326 119 44 chr6 35861130 35861424 -146553818 + L2 LINE L2 39 354 -2960 1844 154 7 0 chr6 35861442 35861722 -146553520 + AluSx SINE Alu 3 284 -28 1509 104 73 0 chr6 35861746 35862006 -146553236 + L1MA8 LINE L1 6008 6286 -5 1424 140 10 0 chr6 35862050 35862257 -146552985 - AluJo SINE Alu -18 294 86 302 229 122 46 chr6 35862311 35862442 -146552800 + L2 LINE L2 446 586 -2728 448 351 117 7 chr6 35862462 35862893 -146552349 + L2 LINE L2 2658 3142 -171 25 90 0 0 chr6 35863348 35863415 -146551827 + AT_rich Low_complexity Low_complexity 1 67 0 310 276 25 44 chr6 35863508 35863648 -146551594 + MIR SINE MIR 1 142 -66 1667 189 6 82 chr6 35865516 35866004 -146549238 + MLT1D LTR MaLR 55 505 0 677 278 63 39 chr6 35866012 35866346 -146548896 + MLT1J2 LTR MaLR 65 406 -44 407 263 75 0 chr6 35866835 35866968 -146548274 + HAL1 LINE L1 1536 1678 -829 424 291 111 54 chr6 35867270 35867676 -146547566 + L1ME LINE L1 2065 2493 -3903 629 158 20 0 chr6 35867751 35867852 -146547390 + U6 snRNA snRNA 1 103 -4 376 315 123 16 chr6 35868012 35868689 -146546553 + L1ME LINE L1 4246 4994 -1221 460 307 73 72 chr6 35868802 35869319 -146545923 + L1ME LINE L1 5065 5593 -638 258 267 38 0 chr6 35869494 35869599 -146545643 + L1ME LINE L1 5773 5881 -352 25 0 0 0 chr6 35869756 35869781 -146545461 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr6 35869879 35869908 -146545334 + AT_rich Low_complexity Low_complexity 1 29 0 256 315 0 11 chr6 35870259 35870351 -146544891 + T-rich Low_complexity Low_complexity 2 92 0 2064 129 0 0 chr6 35871317 35871611 -146543631 + AluSx SINE Alu 10 303 -9 402 274 32 16 chr6 35872252 35872376 -146542866 + MIR SINE MIR 32 157 -105 648 277 194 9 chr6 35872407 35872732 -146542510 - L2 LINE L2 -615 2699 2315 414 289 235 7 chr6 35872748 35872897 -146542345 + MER91A DNA MER1_type 14 196 0 214 294 22 33 chr6 35872942 35873034 -146542208 + MIR SINE MIR 166 256 -6 4020 42 0 8 chr6 35873287 35873782 -146541460 - L1PA5 LINE L1 -2 6152 5662 198 0 0 0 chr6 35873785 35873807 -146541435 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1864 10 0 0 chr6 35873807 35874016 -146541226 - L1PA3 LINE L1 -18 6137 5929 3226 31 0 0 chr6 35874016 35874689 -146540553 - L1PA5 LINE L1 -500 5655 4983 4497 157 79 8 chr6 35874759 35875254 -146539988 - L1MA9 LINE L1 0 6312 5854 261 57 0 0 chr6 35875254 35875289 -146539953 + (TG)n Simple_repeat Simple_repeat 2 36 0 4497 157 79 8 chr6 35875289 35875716 -146539526 - L1MA9 LINE L1 -458 5854 5324 204 40 0 0 chr6 35875716 35875741 -146539501 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 3106 169 40 83 chr6 35875756 35876690 -146538552 - L1PB4 LINE L1 0 6220 5319 2386 130 52 40 chr6 35876690 35876879 -146538363 + MSTC LTR MaLR 1 186 -242 2600 39 3 0 chr6 35876879 35877185 -146538057 + AluY SINE Alu 1 307 -4 2386 130 52 40 chr6 35877185 35877418 -146537824 + MSTC LTR MaLR 186 428 0 3106 169 40 83 chr6 35877418 35877796 -146537446 - L1PB4 LINE L1 -901 5319 4926 2296 263 47 25 chr6 35877802 35879749 -146535493 - L1PB4 LINE L1 -3547 2663 826 1791 191 7 0 chr6 35879774 35880068 -146535174 - AluJo SINE Alu -14 298 3 655 213 15 0 chr6 35880083 35880219 -146535023 - L1PB4 LINE L1 -5329 812 675 2038 213 26 12 chr6 35880374 35880797 -146534445 - L1PB4 LINE L1 -5704 437 9 2453 58 10 10 chr6 35881363 35881672 -146533570 + AluY SINE Alu 1 309 -2 216 0 0 0 chr6 35881938 35881962 -146533280 + (TG)n Simple_repeat Simple_repeat 2 25 0 567 78 0 0 chr6 35882103 35882180 -146533062 + (GA)n Simple_repeat Simple_repeat 2 78 0 269 266 96 0 chr6 35882356 35882450 -146532792 + MIR SINE MIR 47 149 -113 235 328 0 0 chr6 35883575 35883633 -146531609 - L2 LINE L2 -46 3226 3169 2403 94 0 0 chr6 35884262 35884570 -146530672 - AluSg SINE Alu -2 308 1 262 103 51 0 chr6 35885218 35885257 -146529985 + Charlie7 DNA MER1_type 50 90 -2522 189 0 0 0 chr6 35885302 35885323 -146529919 + (TA)n Simple_repeat Simple_repeat 1 21 0 195 42 0 0 chr6 35885735 35885759 -146529483 + (GA)n Simple_repeat Simple_repeat 2 25 0 2208 106 3 10 chr6 35887025 35887326 -146527916 - AluSp SINE Alu -14 299 1 2577 128 30 10 chr6 35887425 35887823 -146527419 + L1PA15 LINE L1 5757 6162 -3 1017 279 63 6 chr6 35888322 35888641 -146526601 + L1M4c LINE L1 1224 1560 -4824 * 1505 200 80 29 chr6 35888640 35889125 -146526117 - L1M4 LINE L1 -5206 1336 777 261 0 0 0 chr6 35889125 35889154 -146526088 + (TG)n Simple_repeat Simple_repeat 2 30 0 1505 200 80 29 chr6 35889154 35889181 -146526061 - L1M4 LINE L1 -5765 777 753 6775 127 12 5 chr6 35889181 35890156 -146525086 + HUERS-P2 LTR ERV1 1850 2831 -257 1640 149 20 0 chr6 35890232 35890481 -146524761 + HUERS-P2 LTR ERV1 2833 3086 -2 3652 152 39 50 chr6 35890483 35891319 -146523923 + LTR1 LTR ERV1 1 785 0 987 329 50 27 chr6 35891319 35891642 -146523600 - L2 LINE L2 -162 3151 2803 1856 151 3 10 chr6 35891642 35891934 -146523308 + AluJo SINE Alu 1 290 -22 987 329 50 27 chr6 35891934 35892215 -146523027 - L2 LINE L2 -510 2803 2530 401 305 59 8 chr6 35892836 35893075 -146522167 + L1M4 LINE L1 4177 4427 -1719 180 0 0 0 chr6 35893199 35893219 -146522023 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 257 0 30 0 chr6 35893500 35893533 -146521709 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 1466 158 113 37 chr6 35893617 35893998 -146521244 + L1MA7 LINE L1 5867 6276 -15 266 179 43 7 chr6 35894003 35894143 -146521099 + (TA)n Simple_repeat Simple_repeat 1 145 0 45 45 0 0 chr6 35894209 35894275 -146520967 + AT_rich Low_complexity Low_complexity 1 66 0 2599 228 31 20 chr6 35894289 35895048 -146520194 + L1M4 LINE L1 4457 5215 -931 938 250 75 81 chr6 35895028 35895859 -146519383 + L1ME2 LINE L1 3686 4511 -1635 * 2129 234 95 13 chr6 35895858 35896550 -146518692 + L1ME2 LINE L1 5241 5988 -176 265 259 86 17 chr6 35896557 35896673 -146518569 + L1ME2 LINE L1 6041 6164 0 1594 155 3 68 chr6 35897188 35897498 -146517744 - AluJo SINE Alu -17 295 6 1875 207 79 53 chr6 35897631 35898123 -146517119 + MLT1F LTR MaLR 38 542 0 6738 61 7 28 chr6 35899049 35901003 -146514239 - SVA Other Other -599 1384 534 211 283 0 0 chr6 35901101 35901154 -146514088 + (CTA)n Simple_repeat Simple_repeat 1 53 0 288 330 78 44 chr6 35901197 35901403 -146513839 - MIR SINE MIR -38 224 12 1106 111 13 0 chr6 35903386 35903576 -146511666 - AluSc SINE Alu 0 323 132 1868 48 9 13 chr6 35903576 35903805 -146511437 - L1PA6 LINE L1 0 6154 5927 526 33 0 0 chr6 35903805 35903866 -146511376 + L1PA5 LINE L1 5806 5866 -288 906 118 0 22 chr6 35903867 35904003 -146511239 - AluSc SINE Alu -176 133 1 241 287 74 46 chr6 35904892 35905000 -146510242 + L2 LINE L2 3186 3296 -17 230 262 107 33 chr6 35905014 35905136 -146510106 - L2 LINE L2 0 3313 3183 21 82 0 0 chr6 35905645 35905694 -146509548 + AT_rich Low_complexity Low_complexity 1 49 0 1202 196 33 4 chr6 35905770 35906015 -146509227 + L1MC2 LINE L1 6088 6339 -5 1536 160 49 65 chr6 35906018 35906386 -146508856 + L1MB5 LINE L1 5813 6174 0 30 27 0 0 chr6 35906723 35906760 -146508482 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 35906998 35907019 -146508223 + AT_rich Low_complexity Low_complexity 1 21 0 2324 125 0 0 chr6 35907073 35907385 -146507857 + AluSx SINE Alu 1 312 0 2128 115 20 0 chr6 35911544 35911840 -146503402 + AluSx SINE Alu 1 302 -10 248 289 26 13 chr6 35911881 35911957 -146503285 + MER57A LTR ERV1 39 115 -319 1268 232 21 1 chr6 35912085 35912399 -146502843 + MER57A LTR ERV1 106 403 0 1903 106 51 4 chr6 35913767 35914041 -146501201 - L1PA11 LINE L1 0 6174 5888 261 242 154 0 chr6 35914308 35914399 -146500843 - MIR3 SINE MIR -21 187 83 249 378 77 14 chr6 35914401 35914610 -146500632 + MIR SINE MIR 13 234 -28 25 31 0 0 chr6 35914610 35914642 -146500600 + AT_rich Low_complexity Low_complexity 1 32 0 2236 89 0 23 chr6 35915472 35915774 -146499468 + AluSc SINE Alu 1 295 -14 2607 50 0 0 chr6 35915775 35916075 -146499167 + AluY SINE Alu 2 301 -10 358 277 104 22 chr6 35917212 35917443 -146497799 - L1ME4a LINE L1 -238 5883 5634 207 88 0 0 chr6 35920638 35920672 -146494570 + (T)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr6 35921363 35921384 -146493858 + AT_rich Low_complexity Low_complexity 1 21 0 443 253 43 54 chr6 35921551 35921730 -146493512 - MIR SINE MIR -33 229 55 2006 139 37 6 chr6 35922150 35922474 -146492768 + LTR64 LTR ERVK 1 334 -224 * 2035 147 84 3 chr6 35922467 35922813 -146492429 + LTR44 LTR ERV1 138 511 -8 902 200 62 26 chr6 35924157 35924352 -146490890 + MER20 DNA MER1_type 5 206 -13 2907 29 0 0 chr6 35924951 35925301 -146489941 - L1P LINE L1 -839 5307 4958 * 3644 2 0 0 chr6 35925298 35925695 -146489547 + L1HS LINE L1 5757 6153 -2 203 258 124 10 chr6 35925808 35925905 -146489337 + MIR SINE MIR 82 190 -18 286 309 187 8 chr6 35926854 35926977 -146488265 - MIR3 SINE MIR -61 147 3 213 316 46 69 chr6 35928592 35928766 -146486476 + MIR SINE MIR 31 200 -62 416 200 32 8 chr6 35929320 35929445 -146485797 + GA-rich Low_complexity Low_complexity 3 130 0 2208 113 0 0 chr6 35929627 35929942 -146485300 + AluSx SINE Alu 1 315 0 217 183 14 14 chr6 35930738 35930809 -146484433 + GA-rich Low_complexity Low_complexity 1 71 0 3340 90 5 0 chr6 35931054 35931500 -146483742 - MER41B LTR ERV1 -187 448 1 24 32 0 0 chr6 35931697 35931728 -146483514 + AT_rich Low_complexity Low_complexity 1 31 0 889 252 156 15 chr6 35931842 35932310 -146482932 + L1ME LINE L1 4220 4753 -1393 845 306 116 18 chr6 35932320 35932891 -146482351 - L2 LINE L2 -1056 2258 1632 299 322 142 22 chr6 35932943 35933397 -146481845 + L1ME LINE L1 5255 5764 -398 2514 48 0 0 chr6 35933476 35933768 -146481474 - AluY SINE Alu -19 292 1 867 118 183 7 chr6 35934023 35934176 -146481066 - MER4C LTR ERV1 -2 463 284 3012 119 47 7 chr6 35934265 35934712 -146480530 - MER4C LTR ERV1 0 465 1 24 53 0 0 chr6 35935537 35935575 -146479667 + AT_rich Low_complexity Low_complexity 1 38 0 289 286 14 0 chr6 35936278 35936348 -146478894 + L1ME LINE L1 10 80 -5990 1563 159 12 0 chr6 35936373 35936624 -146478618 - L1MB1 LINE L1 -1 6167 5914 402 229 57 19 chr6 35936624 35936729 -146478513 - LTR19C LTR ERV1 0 779 671 4215 98 7 0 chr6 35936729 35937312 -146477930 - L1P LINE L1 -3217 2929 2343 2938 56 23 42 chr6 35937308 35937740 -146477502 - L1P LINE L1 -2782 3364 2941 * 11998 123 40 14 chr6 35937742 35937912 -146477330 + Tigger3(Golem) DNA MER2_type 1067 1231 -1798 2375 91 10 0 chr6 35937912 35938209 -146477033 + AluY SINE Alu 1 300 -11 459 0 0 0 chr6 35938209 35938260 -146476982 + (TA)n Simple_repeat Simple_repeat 2 52 0 11998 123 40 14 chr6 35938260 35940000 -146475242 + Tigger3(Golem) DNA MER2_type 1230 3028 -1 3092 151 53 22 chr6 35940983 35941038 -146474204 + MER89 LTR ERV1 1 53 -506 2367 77 3 3 chr6 35941038 35941335 -146473907 + AluSc SINE Alu 1 297 -12 3092 151 53 22 chr6 35941335 35941821 -146473421 + MER89 LTR ERV1 53 559 0 265 261 112 30 chr6 35942283 35942417 -146472825 + LTR33A LTR ERVL 350 494 -29 489 190 0 0 chr6 35942510 35942589 -146472653 - Tigger5 DNA MER2_type 0 2323 2245 * 881 217 148 0 chr6 35942585 35942774 -146472468 - Tigger5 DNA MER2_type -2097 226 10 1258 172 43 27 chr6 35942904 35943345 -146471897 - L1MD2 LINE L1 -2 6357 5855 870 218 40 110 chr6 35943346 35943700 -146471542 - MLT2D LTR ERVL 0 414 86 646 141 0 0 chr6 35943780 35943872 -146471370 - MER6 DNA MER2_type -4 861 770 741 168 198 51 chr6 35943872 35944069 -146471173 - MER1B DNA MER1_type 0 339 114 4418 180 25 7 chr6 35944101 35944650 -146470592 - MER6 DNA MER2_type -83 782 214 330 26 0 0 chr6 35944650 35944689 -146470553 + (CA)n Simple_repeat Simple_repeat 2 40 0 4418 180 25 7 chr6 35944689 35944907 -146470335 - MER6 DNA MER2_type -651 214 1 488 134 0 0 chr6 35944907 35944974 -146470268 - MLT1A2 LTR MaLR -66 308 242 2858 265 72 6 chr6 35944995 35945819 -146469423 - L1MDa LINE L1 -5660 880 3 35 41 0 0 chr6 35946822 35946871 -146468371 + AT_rich Low_complexity Low_complexity 1 49 0 223 288 91 35 chr6 35947252 35947366 -146467876 + MIR SINE MIR 44 161 -65 568 151 38 9 chr6 35947611 35947717 -146467525 - Tigger5 DNA MER2_type 0 2323 2215 267 211 58 0 chr6 35947709 35947761 -146467481 - Tigger5 DNA MER2_type -2268 55 1 * 3152 53 55 2 chr6 35948983 35949380 -146465862 + L1PA8 LINE L1 5750 6167 -5 342 123 0 0 chr6 35950462 35950519 -146464723 + (CA)n Simple_repeat Simple_repeat 2 58 0 2261 84 0 44 chr6 35953022 35953342 -146461900 + AluY SINE Alu 1 306 -5 2487 81 3 0 chr6 35953657 35953966 -146461276 + AluSg SINE Alu 1 310 0 216 0 0 0 chr6 35955169 35955193 -146460049 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 2363 85 0 3 chr6 35955956 35956263 -146458979 + AluSc SINE Alu 1 306 -3 181 301 88 37 chr6 35956703 35956839 -146458403 - MIR SINE MIR -66 196 54 278 321 98 5 chr6 35960662 35960846 -146454396 + MIR SINE MIR 36 236 -26 2434 82 3 0 chr6 35960990 35961294 -146453948 + AluSc SINE Alu 1 305 -4 2602 57 0 10 chr6 35961498 35961812 -146453430 + AluY SINE Alu 1 311 0 4669 170 43 14 chr6 35961823 35962675 -146452567 - L1MC2 LINE L1 -11 6333 5457 2305 201 43 111 chr6 35962677 35963377 -146451865 - L1MD2 LINE L1 -14 6228 5577 1122 170 121 106 chr6 35963379 35963481 -146451761 + AluJo SINE Alu 2 101 -201 2375 96 0 0 chr6 35963481 35963774 -146451468 - AluSc SINE Alu -16 293 1 1122 170 121 106 chr6 35963774 35963953 -146451289 + AluJo SINE Alu 101 287 -15 882 138 6 22 chr6 35963970 35964151 -146451091 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 811 137 43 26 chr6 35964128 35964437 -146450805 + GA-rich Low_complexity Low_complexity 1 314 0 * 10806 184 7 14 chr6 35964454 35964495 -146450747 - L1P LINE L1 -1571 4575 4535 2277 112 0 6 chr6 35964495 35964807 -146450435 - AluSx SINE Alu 0 312 3 10806 184 7 14 chr6 35964807 35966902 -146448340 - L1P LINE L1 -1611 4535 2455 2441 136 37 14 chr6 35966902 35967256 -146447986 + THE1B LTR MaLR 1 362 -2 11379 102 8 10 chr6 35967257 35967849 -146447393 + THE1B-int LTR MaLR 14 606 -974 2361 86 14 0 chr6 35967849 35968141 -146447101 - AluY SINE Alu -15 296 1 11379 102 8 10 chr6 35968141 35969119 -146446123 + THE1B-int LTR MaLR 606 1580 0 2586 114 31 14 chr6 35969119 35969477 -146445765 + THE1B LTR MaLR 1 364 0 10860 174 11 11 chr6 35969492 35970062 -146445180 + L1PA15 LINE L1 3389 3958 -2207 2154 104 4 0 chr6 35970062 35970341 -146444901 + AluSc SINE Alu 15 294 -15 10860 174 11 11 chr6 35970341 35970492 -146444750 + L1PA15 LINE L1 3958 4108 -2057 1932 123 3 48 chr6 35970492 35970801 -146444441 - AluSc SINE Alu -14 295 1 10860 174 11 11 chr6 35970801 35971937 -146443305 + L1PA15 LINE L1 4108 5243 -922 2657 147 58 14 chr6 35971937 35972366 -146442876 + MER83 LTR ERV1 1 448 0 10860 174 11 11 chr6 35972366 35972971 -146442271 + L1PA15 LINE L1 5243 5827 -338 4938 74 115 124 chr6 35972971 35973804 -146441438 - LTR12 LTR ERV1 0 826 1 10860 174 11 11 chr6 35973804 35974143 -146441099 + L1PA15 LINE L1 5826 6164 -1 233 343 64 101 chr6 35975294 35975843 -146439399 - L2 LINE L2 -5 3267 2739 214 284 27 0 chr6 35976028 35976102 -146439140 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 2971 90 11 0 chr6 35976213 35976591 -146438651 - L1PA10 LINE L1 -10 6158 5777 285 285 107 67 chr6 35976594 35976969 -146438273 + Tigger4(Zombi) DNA MER2_type 457 846 -1885 711 216 148 6 chr6 35976983 35977145 -146438097 - MER20 DNA MER1_type -6 213 29 2207 159 27 30 chr6 35977594 35977959 -146437283 + THE1B LTR MaLR 1 364 0 389 133 8 6 chr6 35978237 35978358 -146436884 + MER53 DNA DNA 2 188 -1 190 348 128 12 chr6 35978598 35978762 -146436480 + MIR SINE MIR 11 193 -69 215 279 73 15 chr6 35979059 35979127 -146436115 + MIR SINE MIR 58 129 -79 248 378 9 9 chr6 35979233 35979344 -146435898 + L2 LINE L2 3203 3313 0 964 307 124 41 chr6 35979521 35980330 -146434912 + L2 LINE L2 1776 2517 -796 9669 29 11 0 chr6 35980330 35981389 -146433853 - MER11C LTR ERVK 0 1071 1 964 307 124 41 chr6 35981389 35981988 -146433254 + L2 LINE L2 2517 3313 0 720 95 0 3 chr6 35982215 35982447 -146432795 + AluSg SINE Alu 2 303 -9 20855 36 1 1 chr6 35982454 35985610 -146429632 - L1PA4 LINE L1 0 6155 2993 2071 132 3 7 chr6 35985702 35986012 -146429230 + AluSq SINE Alu 1 309 -4 598 316 63 71 chr6 35986023 35986574 -146428668 + L2 LINE L2 2766 3312 -1 22 0 0 0 chr6 35986760 35986782 -146428460 + AT_rich Low_complexity Low_complexity 1 22 0 1510 215 7 0 chr6 35986800 35987093 -146428149 + AluJb SINE Alu 3 297 -15 297 208 13 0 chr6 35987364 35987441 -146427801 + MER116 DNA Mariner 2 79 -1 1944 131 10 0 chr6 35989361 35989651 -146425591 - AluY SINE Alu -18 293 1 21 0 0 0 chr6 35989924 35989945 -146425297 + AT_rich Low_complexity Low_complexity 1 21 0 2299 94 0 3 chr6 35990035 35990342 -146424900 - AluY SINE Alu -5 306 1 23094 115 28 7 chr6 35990343 35992174 -146423068 - HERVK3 LTR ERVK -3792 3451 1514 2331 85 7 7 chr6 35992174 35992469 -146422773 + AluY SINE Alu 1 295 -16 23094 115 28 7 chr6 35992469 35994016 -146421226 - HERVK3 LTR ERVK -5729 1514 1 2336 178 33 7 chr6 35994016 35994437 -146420805 - LTR3 LTR ERVK 0 432 1 2146 94 3 11 chr6 35994561 35994876 -146420366 + AluY SINE Alu 1 313 0 934 196 39 17 chr6 35994923 35995102 -146420140 - MER20 DNA MER1_type -7 212 30 341 167 25 6 chr6 35995861 35995973 -146419269 + MER53 DNA DNA 9 188 -1 218 313 12 12 chr6 35996891 35996971 -146418271 + L2 LINE L2 3229 3308 -5 585 318 144 38 chr6 35997188 35998520 -146416722 + L2 LINE L2 1813 3296 -17 2254 118 3 0 chr6 35998720 35999025 -146416217 - AluSc SINE Alu -3 306 1 21 57 0 0 chr6 35999035 35999070 -146416172 + AT_rich Low_complexity Low_complexity 1 35 0 1576 191 28 0 chr6 35999085 35999373 -146415869 + AluJb SINE Alu 1 296 -16 301 208 13 0 chr6 35999653 35999730 -146415512 + MER116 DNA Mariner 2 79 -1 211 344 21 11 chr6 36001101 36001194 -146414048 + MIR SINE MIR 21 114 -94 274 310 76 47 chr6 36002079 36002250 -146412992 - MIR SINE MIR -19 243 68 728 221 236 30 chr6 36003096 36003367 -146411875 + MER52A LTR ERV1 221 547 -1208 2774 212 130 39 chr6 36003397 36004053 -146411189 - L1MDa LINE L1 -3891 2649 1858 1855 161 0 37 chr6 36004053 36004376 -146410866 + AluJb SINE Alu 1 311 -1 2774 212 130 39 chr6 36004376 36004780 -146410462 - L1MDa LINE L1 -4682 1858 1492 975 289 70 30 chr6 36004872 36005401 -146409841 + L1M4 LINE L1 3389 3938 -2208 1207 174 31 9 chr6 36005411 36005635 -146409607 + MSTB LTR MaLR 198 426 0 1014 257 59 32 chr6 36005680 36006237 -146409005 - L1M4 LINE L1 -2988 3158 2587 247 302 48 0 chr6 36007374 36007500 -146407742 - L1P5 LINE L1 -712 5439 5308 905 248 51 39 chr6 36007789 36008120 -146407122 - L1MB8 LINE L1 -32 6146 5812 623 241 0 0 chr6 36008121 36008258 -146406984 - L1PB4 LINE L1 0 6156 6020 381 224 0 0 chr6 36008258 36008334 -146406908 - U1 snRNA snRNA -87 78 3 1187 257 24 3 chr6 36008345 36008637 -146406605 - L1MB8 LINE L1 -349 5817 5520 21 36 0 0 chr6 36008842 36008870 -146406372 + AT_rich Low_complexity Low_complexity 1 28 0 248 287 23 0 chr6 36009119 36009206 -146406036 + L1MC4 LINE L1 6615 6703 -1339 247 125 0 0 chr6 36009216 36009264 -146405978 - LTR66 LTR ERVL -169 441 394 329 335 106 24 chr6 36009540 36009833 -146405409 + MLT1L LTR MaLR 223 539 -76 617 136 16 24 chr6 36010546 36010671 -146404571 - L1MA8 LINE L1 -4 6287 6164 210 91 0 0 chr6 36010717 36010750 -146404492 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 738 109 0 0 chr6 36011370 36011471 -146403771 - LTR12 LTR ERV1 -133 581 481 255 316 53 0 chr6 36011472 36011586 -146403656 - LTR30 LTR ERV1 -79 643 524 1641 106 7 66 chr6 36011586 36011860 -146403382 - LTR12 LTR ERV1 -456 258 1 309 270 0 0 chr6 36012760 36012834 -146402408 - MIR SINE MIR -139 123 50 400 292 81 11 chr6 36013752 36013937 -146401305 + MIR SINE MIR 8 205 -57 23 0 0 0 chr6 36014903 36014926 -146400316 + AT_rich Low_complexity Low_complexity 1 23 0 288 106 0 0 chr6 36015631 36015669 -146399573 + (TC)n Simple_repeat Simple_repeat 1 41 -6 261 0 0 0 chr6 36015669 36015698 -146399544 + (CA)n Simple_repeat Simple_repeat 1 29 0 288 106 0 0 chr6 36015698 36015706 -146399536 + (TC)n Simple_repeat Simple_repeat 40 47 0 214 331 75 81 chr6 36016647 36017001 -146398241 - L2 LINE L2 -251 3062 2715 904 192 45 17 chr6 36017695 36017872 -146397370 - MER20 DNA MER1_type -7 212 31 342 208 15 5 chr6 36018639 36018761 -146396481 + MER53 DNA DNA 1 189 0 437 311 110 65 chr6 36019978 36020790 -146394452 + L2 LINE L2 1813 2587 -726 2073 115 0 4 chr6 36020790 36021068 -146394174 + AluSc SINE Alu 1 277 -32 437 311 110 65 chr6 36021068 36021153 -146394089 + L2 LINE L2 2587 2667 -646 2178 123 0 16 chr6 36021153 36021469 -146393773 + AluSq SINE Alu 3 313 0 437 311 110 65 chr6 36021469 36021989 -146393253 + L2 LINE L2 2667 3295 -18 1605 201 7 0 chr6 36022231 36022520 -146392722 + AluJb SINE Alu 3 293 -19 278 194 14 0 chr6 36022800 36022872 -146392370 + MER116 DNA Mariner 2 74 -6 1845 158 0 7 chr6 36024788 36025092 -146390150 - AluY SINE Alu -9 302 1 26 82 0 0 chr6 36025322 36025383 -146389859 + AT_rich Low_complexity Low_complexity 1 61 0 304 337 47 32 chr6 36025528 36025718 -146389524 - MIR SINE MIR -19 243 51 747 140 70 14 chr6 36026342 36026535 -146388707 + AluJb SINE Alu 161 361 0 3250 178 117 89 chr6 36027276 36028223 -146387019 + MER52A LTR ERV1 270 1239 -516 1028 195 27 46 chr6 36028315 36028370 -146386872 - L1MC2 LINE L1 -23 6321 6266 2915 7 0 0 chr6 36028370 36028678 -146386564 + AluYa5 SINE Alu 1 308 -3 1028 195 27 46 chr6 36028678 36028884 -146386358 - L1MC2 LINE L1 -78 6266 6065 2354 189 15 22 chr6 36028887 36029341 -146385901 + LOR1b LTR ERV1 1 451 -10 254 189 0 0 chr6 36029341 36029378 -146385864 + LOR1a LTR ERV1 461 497 0 2613 183 25 0 chr6 36029382 36029864 -146385378 - L1MC2 LINE L1 -284 6060 5567 1548 155 75 19 chr6 36029866 36030131 -146385111 + MER51A LTR ERV1 3 282 -352 24 0 0 0 chr6 36030317 36030341 -146384901 + AT_rich Low_complexity Low_complexity 1 24 0 6926 116 4 9 chr6 36030363 36031337 -146383905 + LTR5 LTR ERVK 1 969 0 1169 188 43 27 chr6 36031408 36031664 -146383578 - L1MC2 LINE L1 -25 6319 6060 968 156 21 0 chr6 36031692 36031871 -146383371 - L1MC2 LINE L1 -687 5657 5465 441 288 38 6 chr6 36031884 36032044 -146383198 - L1MD3 LINE L1 0 7995 7831 * 2306 219 48 20 chr6 36032042 36032603 -146382639 - L1MD2 LINE L1 -216 6537 5961 2177 80 243 175 chr6 36032605 36033153 -146382089 + LTR12 LTR ERV1 1 585 -129 10140 125 13 13 chr6 36033172 36034694 -146380548 + HERV9 LTR ERV1 1 1522 -6877 10574 105 9 10 chr6 36034696 36036168 -146379074 + HERV9 LTR ERV1 1730 3199 -5200 8195 93 4 13 chr6 36036157 36037286 -146377956 + HERV9 LTR ERV1 7281 8399 0 * 5692 89 100 0 chr6 36037286 36038037 -146377205 + LTR12 LTR ERV1 1 826 0 1637 227 62 83 chr6 36038045 36038300 -146376942 - L1MD2 LINE L1 -682 5954 5695 2376 80 0 13 chr6 36038300 36038599 -146376643 - AluY SINE Alu -16 295 1 1637 227 62 83 chr6 36038599 36039663 -146375579 - L1MD2 LINE L1 -941 5695 4662 2874 249 105 57 chr6 36039671 36040528 -146374714 - L1MD2 LINE L1 -2079 4461 3646 2201 95 20 0 chr6 36040528 36040823 -146374419 - AluSp SINE Alu -12 301 1 2874 249 105 57 chr6 36040823 36041042 -146374200 - L1MD2 LINE L1 -2894 3646 3439 618 83 0 62 chr6 36041042 36041138 -146374104 - AluY SINE Alu -4 307 218 1548 50 0 0 chr6 36041138 36041317 -146373925 - AluY SINE Alu -126 185 7 1933 84 4 4 chr6 36041320 36041581 -146373661 - AluSc SINE Alu -48 261 1 1918 119 0 17 chr6 36041582 36041877 -146373365 - AluSg SINE Alu -20 290 1 2874 249 105 57 chr6 36041877 36043160 -146372082 - L1MD2 LINE L1 -3102 3438 1864 1878 176 0 3 chr6 36043160 36043473 -146371769 + AluJb SINE Alu 1 312 0 2874 249 105 57 chr6 36043473 36043865 -146371377 - L1MD2 LINE L1 -4676 1864 1492 320 319 62 27 chr6 36043877 36044794 -146370448 + L1 LINE L1 3339 4335 -1811 2480 152 43 14 chr6 36044794 36045208 -146370034 + MSTB LTR MaLR 1 426 0 320 319 62 27 chr6 36045208 36045260 -146369982 + L1 LINE L1 4335 4384 -1762 1983 147 0 13 chr6 36045275 36045588 -146369654 - AluSg SINE Alu -1 309 1 207 0 0 0 chr6 36045593 36045616 -146369626 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2111 93 0 7 chr6 36045619 36045898 -146369344 - AluSg1 SINE Alu -31 278 2 1041 267 47 30 chr6 36045929 36046292 -146368950 - L1MB8 LINE L1 -2 6176 5808 660 226 0 0 chr6 36046308 36046445 -146368797 - L1PB4 LINE L1 0 6156 6020 451 197 0 0 chr6 36046445 36046521 -146368721 - U1 snRNA snRNA -87 78 3 1382 227 20 3 chr6 36046526 36046825 -146368417 - L1MB8 LINE L1 -343 5823 5520 1879 168 0 0 chr6 36046891 36047195 -146368047 + AluSg SINE Alu 1 304 -6 213 153 42 0 chr6 36047596 36047668 -146367574 + (TA)n Simple_repeat Simple_repeat 1 75 0 279 310 143 50 chr6 36047985 36048285 -146366957 + MLT1L LTR MaLR 278 605 -10 689 137 0 30 chr6 36048948 36049079 -146366163 - L1MA8 LINE L1 -4 6287 6161 324 250 0 25 chr6 36050651 36050731 -146364511 - MIR SINE MIR -135 127 50 471 332 47 5 chr6 36051772 36051965 -146363277 + MIR SINE MIR 8 208 -54 288 0 0 0 chr6 36052401 36052433 -146362809 + (TA)n Simple_repeat Simple_repeat 2 33 0 1142 106 0 0 chr6 36052433 36052584 -146362658 - AluSg/x SINE Alu -7 305 155 7881 128 7 2 chr6 36052584 36053768 -146361474 - HERVK3 LTR ERVK -2089 5154 3965 25596 112 12 3 chr6 36053768 36057408 -146357834 - HERVK3 LTR ERVK -3571 3672 1 2195 173 32 37 chr6 36057408 36057842 -146357400 - LTR3 LTR ERVK 0 432 1 2429 75 0 0 chr6 36057964 36058258 -146356984 + AluY SINE Alu 1 294 -17 785 220 51 17 chr6 36058306 36058483 -146356759 - MER20 DNA MER1_type -7 212 30 338 186 23 5 chr6 36059236 36059357 -146355885 + MER53 DNA DNA 1 189 0 2465 62 0 3 chr6 36059744 36060049 -146355193 - AluY SINE Alu -7 304 1 21 36 0 0 chr6 36060052 36060080 -146355162 + AT_rich Low_complexity Low_complexity 1 28 0 196 387 11 11 chr6 36060568 36060661 -146354581 + L2 LINE L2 3216 3308 -5 885 308 152 44 chr6 36060878 36062234 -146353008 + L2 LINE L2 1813 3312 -1 2185 109 3 3 chr6 36062412 36062714 -146352528 - AluSc SINE Alu -7 302 1 1596 184 28 0 chr6 36062778 36063066 -146352176 + AluJb SINE Alu 1 296 -16 281 179 15 15 chr6 36063350 36063417 -146351825 + MER116 DNA Mariner 6 72 -8 264 310 161 23 chr6 36064758 36064932 -146350310 + MIR3 SINE MIR 7 204 -4 279 345 64 35 chr6 36065753 36065924 -146349318 - MIR SINE MIR -19 243 68 221 197 16 16 chr6 36065984 36066045 -146349197 + GA-rich Low_complexity Low_complexity 4 64 0 669 194 54 62 chr6 36066767 36067040 -146348202 + MER52A LTR ERV1 221 597 -681 2979 206 125 34 chr6 36067070 36067727 -146347515 - L1MDa LINE L1 -3891 2649 1857 1832 182 0 3 chr6 36067727 36068040 -146347202 + AluJb SINE Alu 1 312 0 2979 206 125 34 chr6 36068040 36068443 -146346799 - L1MDa LINE L1 -4683 1857 1492 234 312 63 23 chr6 36068455 36069372 -146345870 + L1M4 LINE L1 3336 4335 -1811 2458 167 33 17 chr6 36069372 36069791 -146345451 + MSTB LTR MaLR 1 426 0 234 312 63 23 chr6 36069791 36069838 -146345404 + L1M4 LINE L1 4335 4379 -1767 1121 263 42 39 chr6 36069863 36070406 -146344836 - L1M4 LINE L1 -3021 3125 2581 250 309 48 0 chr6 36071562 36071688 -146343554 - L1P5 LINE L1 -712 5439 5308 962 288 45 14 chr6 36071906 36072264 -146342978 - L1MB8 LINE L1 -2 6176 5808 599 234 7 7 chr6 36072271 36072408 -146342834 - L1PB4 LINE L1 0 6156 6020 420 197 0 0 chr6 36072410 36072481 -146342761 - U1 snRNA snRNA -92 73 3 1246 259 17 3 chr6 36072486 36072783 -146342459 - L1MB8 LINE L1 -343 5823 5523 231 36 0 0 chr6 36073228 36073269 -146341973 + (TG)n Simple_repeat Simple_repeat 1 69 0 231 36 0 0 chr6 36073269 36073297 -146341945 + (TG)n Simple_repeat Simple_repeat 2 29 0 382 314 108 35 chr6 36073579 36073920 -146341322 + MLT1L LTR MaLR 246 611 -4 698 142 0 24 chr6 36074571 36074698 -146340544 - L1MA8 LINE L1 -4 6287 6164 795 89 0 0 chr6 36075401 36075502 -146339740 - LTR12 LTR ERV1 -133 581 481 335 200 33 22 chr6 36075503 36075593 -146339649 - LTR30 LTR ERV1 -79 643 553 1837 137 7 3 chr6 36075594 36075878 -146339364 - LTR12 LTR ERV1 -429 285 1 318 263 0 25 chr6 36076771 36076851 -146338391 - MIR SINE MIR -135 127 50 440 250 228 17 chr6 36077788 36077968 -146337274 + MIR SINE MIR 8 225 -37 29 60 0 0 chr6 36078872 36078922 -146336320 + AT_rich Low_complexity Low_complexity 1 50 0 222 62 0 0 chr6 36079627 36079659 -146335583 + (TC)n Simple_repeat Simple_repeat 2 33 0 315 0 0 0 chr6 36079659 36079694 -146335548 + (CA)n Simple_repeat Simple_repeat 1 35 0 365 326 73 77 chr6 36080638 36080993 -146334249 - L2 LINE L2 -251 3062 2715 212 265 0 0 chr6 36081147 36081196 -146334046 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 311 295 135 39 chr6 36081199 36081585 -146333657 + Tigger4(Zombi) DNA MER2_type 348 770 -1961 818 206 36 18 chr6 36081663 36081828 -146333414 - MER20 DNA MER1_type -7 212 45 350 172 8 29 chr6 36082605 36082727 -146332515 + MER53 DNA DNA 1 189 0 180 350 12 12 chr6 36083635 36083715 -146331527 + L2 LINE L2 3229 3308 -5 823 321 112 52 chr6 36083948 36084755 -146330487 + L2 LINE L2 1813 2570 -743 2104 132 0 3 chr6 36084755 36085065 -146330177 + AluY SINE Alu 1 309 -2 823 321 112 52 chr6 36085065 36085133 -146330109 + L2 LINE L2 2570 2632 -681 2231 99 0 26 chr6 36085133 36085436 -146329806 + AluSq SINE Alu 3 297 -16 2104 114 0 0 chr6 36085438 36085775 -146329467 + AluY SINE Alu 1 337 0 823 321 112 52 chr6 36085775 36086307 -146328935 + L2 LINE L2 2632 3312 -1 1741 179 7 0 chr6 36086529 36086820 -146328422 + AluJb SINE Alu 3 295 -17 259 222 14 0 chr6 36087101 36087173 -146328069 + MER116 DNA Mariner 2 74 -6 190 359 43 11 chr6 36088547 36088639 -146326603 + MIR SINE MIR 20 114 -94 1884 151 0 23 chr6 36089231 36089530 -146325712 + AluSx SINE Alu 1 292 -20 299 365 44 22 chr6 36089842 36090023 -146325219 - MIR SINE MIR -10 252 68 404 59 0 0 chr6 36090024 36090075 -146325167 - Alu SINE Alu -262 51 1 22 0 0 0 chr6 36090200 36090222 -146325020 + AT_rich Low_complexity Low_complexity 1 22 0 187 289 0 0 chr6 36090475 36090520 -146324722 - L3 LINE CR1 -418 1159 1115 614 198 85 124 chr6 36090816 36091074 -146324168 - MLT1A1 LTR MaLR 0 365 118 28 0 0 0 chr6 36092340 36092368 -146322874 + AT_rich Low_complexity Low_complexity 1 28 0 2112 92 54 3 chr6 36093106 36093400 -146321842 - AluSc SINE Alu 0 309 1 468 198 20 0 chr6 36093794 36093895 -146321347 - MLT1A1 LTR MaLR -262 103 1 1073 135 0 59 chr6 36093895 36094117 -146321125 - L1 LINE L1 -786 5360 5152 1424 175 0 0 chr6 36094120 36094383 -146320859 + L1MB1 LINE L1 5867 6129 -60 233 256 0 33 chr6 36094366 36094456 -146320786 - L1M4 LINE L1 -3382 2764 2678 * 855 167 0 10 chr6 36094454 36094652 -146320590 + L1MA7 LINE L1 4225 4420 -1726 * 3648 165 18 47 chr6 36094636 36094766 -146320476 + L1MA7 LINE L1 4643 4775 -1516 2023 128 0 0 chr6 36094766 36095070 -146320172 + AluSg1 SINE Alu 1 304 0 3648 165 18 47 chr6 36095070 36095709 -146319533 + L1MA7 LINE L1 4775 5431 -860 2351 108 0 3 chr6 36095709 36096015 -146319227 + AluSc SINE Alu 5 309 0 3648 165 18 47 chr6 36096015 36096160 -146319082 + L1MA7 LINE L1 5431 5579 -712 2055 129 0 41 chr6 36096160 36096477 -146318765 + AluSx SINE Alu 1 304 -8 3648 165 18 47 chr6 36096477 36096785 -146318457 + L1MA7 LINE L1 5579 5894 -397 2432 88 0 0 chr6 36096785 36097091 -146318151 + AluY SINE Alu 1 306 -5 3648 165 18 47 chr6 36097091 36097459 -146317783 + L1MA7 LINE L1 5894 6288 -3 204 313 15 0 chr6 36098799 36098866 -146316376 - L2 LINE L2 -4 3309 3242 180 239 56 56 chr6 36100284 36100355 -146314887 + L2 LINE L2 3227 3297 -16 2256 121 0 0 chr6 36100361 36100666 -146314576 + AluSg SINE Alu 1 305 -5 355 262 33 48 chr6 36100712 36100922 -146314320 - L1ME3A LINE L1 0 6170 5964 504 264 8 50 chr6 36101061 36101303 -146313939 + L1M4 LINE L1 4877 5108 -1038 216 280 13 53 chr6 36101918 36101993 -146313249 - L2 LINE L2 -8 3305 3234 236 293 152 0 chr6 36102041 36102140 -146313102 + L2 LINE L2 3199 3312 -1 21 57 0 0 chr6 36102141 36102176 -146313066 + AT_rich Low_complexity Low_complexity 1 35 0 2103 143 0 3 chr6 36102196 36102586 -146312656 + AluSx SINE Alu 1 389 0 189 275 110 0 chr6 36103783 36103874 -146311368 - MIR SINE MIR -33 229 129 2126 123 7 0 chr6 36104164 36104466 -146310776 + AluSx SINE Alu 1 304 -8 193 217 192 58 chr6 36105941 36106061 -146309181 + MIR SINE MIR 6 141 -121 4955 131 65 31 chr6 36106192 36106618 -146308624 + MER4D LTR ERV1 1 411 -492 2299 89 6 13 chr6 36106618 36106932 -146308310 - AluSx SINE Alu 0 312 1 4955 131 65 31 chr6 36106932 36107378 -146307864 + MER4D LTR ERV1 411 903 0 1160 172 39 0 chr6 36107382 36107615 -146307627 - Tigger2 DNA MER2_type -16 2702 2461 3630 170 52 6 chr6 36107682 36108393 -146306849 - Tigger2 DNA MER2_type -1974 744 1 21 36 0 0 chr6 36108437 36108465 -146306777 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 36109367 36109394 -146305848 + AT_rich Low_complexity Low_complexity 1 27 0 3584 259 70 63 chr6 36109534 36110964 -146304278 + L1M4b LINE L1 83 1522 -5337 2318 157 64 73 chr6 36110981 36111498 -146303744 - MLT2B1 LTR ERVL -8 512 1 345 167 26 0 chr6 36111498 36111576 -146303666 + L1M4b LINE L1 1517 1596 -5263 5114 87 13 6 chr6 36111576 36112293 -146302949 + LTR30 LTR ERV1 1 722 0 1624 191 8 67 chr6 36112310 36112496 -146302746 - MLT1A1 LTR MaLR 0 365 212 2789 41 0 0 chr6 36112496 36112837 -146302405 - L1PA4 LINE L1 0 6155 5815 1624 191 8 67 chr6 36112837 36113038 -146302204 - MLT1A1 LTR MaLR -153 212 1 514 155 10 0 chr6 36113042 36113145 -146302097 + L1M4b LINE L1 1611 1714 -5141 2300 88 0 0 chr6 36113650 36113957 -146301285 + AluY SINE Alu 1 307 0 273 373 8 25 chr6 36114212 36114350 -146300892 + MIR SINE MIR 8 142 -66 497 283 67 100 chr6 36114552 36114568 -146300674 + L1ME LINE L1 4460 4475 -1671 1855 153 20 7 chr6 36114568 36114862 -146300380 + AluSx SINE Alu 1 298 -14 497 283 67 100 chr6 36114862 36115397 -146299845 + L1ME LINE L1 4475 4993 -1153 1347 168 0 4 chr6 36115409 36115659 -146299583 + L1M2 LINE L1 5417 5665 -635 38 39 0 0 chr6 36115742 36115794 -146299448 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr6 36115927 36115952 -146299290 + AT_rich Low_complexity Low_complexity 1 25 0 481 329 104 27 chr6 36115991 36116365 -146298877 + L1ME LINE L1 5352 5754 -408 1941 163 47 116 chr6 36116637 36117129 -146298113 - MER66B LTR ERV1 0 486 29 22 80 0 0 chr6 36118674 36118724 -146296518 + AT_rich Low_complexity Low_complexity 1 50 0 1128 111 50 15 chr6 36118845 36119043 -146296199 - L1MB5 LINE L1 -9 6165 5961 343 372 50 11 chr6 36119576 36119756 -146295486 - HAL1 LINE L1 -1784 723 537 21 36 0 0 chr6 36119769 36119797 -146295445 + AT_rich Low_complexity Low_complexity 1 28 0 284 233 17 0 chr6 36120871 36120931 -146294311 - MER2 DNA MER2_type 0 345 285 368 230 23 0 chr6 36120946 36121033 -146294209 - MER2 DNA MER2_type -247 98 10 380 254 0 0 chr6 36121331 36121402 -146293840 + MIR SINE MIR 30 100 -162 357 263 45 6 chr6 36121410 36121566 -146293676 - L1M4 LINE L1 -3815 2331 2170 391 236 7 107 chr6 36121566 36121706 -146293536 + MIR SINE MIR 136 261 -1 2184 102 3 0 chr6 36122336 36122643 -146292599 - AluSq SINE Alu 0 308 1 1462 261 30 15 chr6 36123144 36123782 -146291460 - L1MEc LINE L1 -3461 2754 2143 301 248 45 15 chr6 36123826 36123959 -146291283 - L1MEc LINE L1 -4414 1982 1846 1038 200 23 19 chr6 36123959 36124174 -146291068 + MER20 DNA MER1_type 1 216 -3 6458 75 55 2 chr6 36124186 36124530 -146290712 - L1PA13 LINE L1 -5 6158 5833 2153 79 68 0 chr6 36124530 36124810 -146290432 - AluY SINE Alu -12 299 1 6458 75 55 2 chr6 36124810 36126035 -146289207 - L1PA13 LINE L1 -330 5833 4561 595 186 106 0 chr6 36126112 36126225 -146289017 + FLAM_A SINE Alu 1 125 -8 2349 86 0 13 chr6 36126555 36126858 -146288384 - AluY SINE Alu -12 299 1 548 285 43 4 chr6 36127373 36127606 -146287636 + MLT1H LTR MaLR 14 299 -250 290 324 29 7 chr6 36127683 36127819 -146287423 + MLT1H LTR MaLR 409 547 -2 189 329 61 69 chr6 36128023 36128254 -146286988 - MIR SINE MIR -27 235 7 624 73 8 2 chr6 36128804 36129063 -146286179 + AluY SINE Alu 1 305 -4 369 271 10 0 chr6 36129572 36129668 -146285574 + MIR SINE MIR 58 154 -108 445 217 92 0 chr6 36129757 36129877 -146285365 - MER90 LTR ERV1 -2 612 482 1011 226 42 58 chr6 36129877 36130258 -146284984 - MLT2C1 LTR ERVL -18 379 5 1751 179 34 64 chr6 36130264 36130732 -146284510 - MER90 LTR ERV1 -140 474 21 2267 120 3 0 chr6 36131627 36131936 -146283306 + AluSg SINE Alu 1 310 0 24 0 0 0 chr6 36132661 36132685 -146282557 + AT_rich Low_complexity Low_complexity 1 24 0 1968 153 10 0 chr6 36133216 36133523 -146281719 + AluJo SINE Alu 1 310 -2 659 147 17 40 chr6 36133523 36133700 -146281542 + GA-rich Low_complexity Low_complexity 1 173 0 1045 204 62 4 chr6 36134046 36134306 -146280936 - ORSL DNA AcHobo 0 275 1 231 313 40 80 chr6 36135907 36136057 -146279185 - L2 LINE L2 -50 3222 3079 664 99 3 3 chr6 36137234 36137341 -146277901 - MER51B LTR ERV1 -74 540 212 320 285 123 15 chr6 36139301 36139431 -146275811 + MIR SINE MIR 92 235 -27 27 0 0 0 chr6 36139457 36139484 -146275758 + AT_rich Low_complexity Low_complexity 1 27 0 1963 134 10 6 chr6 36139887 36140134 -146275108 + L1MC1 LINE L1 6013 6263 -70 1879 149 41 56 chr6 36140134 36140476 -146274766 - MER1B DNA MER1_type 0 337 1 1963 134 10 6 chr6 36140476 36140542 -146274700 + L1MC1 LINE L1 6263 6327 -6 3363 30 0 0 chr6 36140542 36140938 -146274304 + L1PA4 LINE L1 5756 6152 -3 189 0 0 0 chr6 36140946 36140967 -146274275 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 345 82 0 0 chr6 36141139 36141188 -146274054 + (TG)n Simple_repeat Simple_repeat 2 50 0 1239 180 52 29 chr6 36141584 36141856 -146273386 + AluJo SINE Alu 5 282 -30 216 0 0 0 chr6 36141859 36141883 -146273359 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 250 224 0 0 chr6 36142071 36142129 -146273113 + L1MC5 LINE L1 7385 7442 -519 266 53 70 0 chr6 36142154 36142211 -146273031 + GA-rich Low_complexity Low_complexity 2 62 0 417 226 78 39 chr6 36142289 36142493 -146272749 + L1MC5 LINE L1 7641 7852 -109 214 290 48 16 chr6 36142902 36142964 -146272278 - L2 LINE L2 -75 3197 3134 876 279 24 20 chr6 36143897 36144194 -146271048 - LTR16A LTR ERVL -131 319 22 1161 122 0 0 chr6 36144305 36144461 -146270781 - AluSg SINE Alu -37 275 120 294 53 53 0 chr6 36144461 36144518 -146270724 + T-rich Low_complexity Low_complexity 1 60 0 282 73 0 0 chr6 36144575 36144616 -146270626 + (T)n Simple_repeat Simple_repeat 1 41 0 6215 44 14 23 chr6 36144617 36145412 -146269830 - SVA Other Other -3 1383 596 1073 83 0 0 chr6 36145420 36145553 -146269689 - AluSg SINE Alu -173 137 5 3307 145 61 30 chr6 36145593 36146030 -146269212 + L1MA7 LINE L1 5594 6016 -275 1657 174 32 0 chr6 36146030 36146312 -146268930 + AluJb SINE Alu 1 291 -21 3307 145 61 30 chr6 36146312 36146393 -146268849 + L1MA7 LINE L1 6016 6093 -198 1306 210 52 6 chr6 36146393 36146722 -146268520 + MER2 DNA MER2_type 1 344 0 3307 145 61 30 chr6 36146722 36146877 -146268365 + L1MA7 LINE L1 6093 6289 -2 25 31 0 0 chr6 36146945 36146977 -146268265 + AT_rich Low_complexity Low_complexity 1 32 0 234 139 0 0 chr6 36148674 36148710 -146266532 + MLT1K LTR MaLR 142 177 -411 180 97 0 0 chr6 36148768 36148799 -146266443 + (CA)n Simple_repeat Simple_repeat 2 32 0 268 266 26 35 chr6 36148956 36149069 -146266173 + (CAGAGA)n Simple_repeat Simple_repeat 3 114 0 187 338 105 0 chr6 36152133 36152266 -146262976 - L2 LINE L2 -59 3254 3108 2542 55 0 3 chr6 36153655 36153967 -146261275 + AluY SINE Alu 1 311 0 276 304 108 0 chr6 36154191 36154293 -146260949 - L2 LINE L2 0 3313 3201 331 231 132 67 chr6 36155114 36155331 -146259911 + L1M2 LINE L1 767 1237 -5612 239 360 11 0 chr6 36157216 36157305 -146257937 + MIR SINE MIR 56 145 -117 1961 246 74 4 chr6 36157305 36157833 -146257409 - Zaphod DNA AcHobo -3384 647 83 181 200 0 0 chr6 36157940 36157975 -146257267 + MIR SINE MIR 201 235 -27 2933 139 12 10 chr6 36160236 36160639 -146254603 + L1MA7 LINE L1 5425 5831 -460 1129 163 54 152 chr6 36160639 36161154 -146254088 - MER4C LTR ERV1 0 465 1 2933 139 12 10 chr6 36161154 36161266 -146253976 + L1MA7 LINE L1 5831 5941 -350 204 40 0 0 chr6 36161287 36161312 -146253930 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 22478 170 15 27 chr6 36161312 36161814 -146253428 - L1PA10 LINE L1 -22 6461 5955 2811 71 3 0 chr6 36161814 36162168 -146253074 + THE1A LTR MaLR 1 355 0 11582 97 3 19 chr6 36162168 36163443 -146251799 + THE1A-int LTR MaLR 1 1247 -333 2343 106 0 3 chr6 36163443 36163755 -146251487 + AluY SINE Alu 1 311 0 11582 97 3 19 chr6 36163755 36164084 -146251158 + THE1A-int LTR MaLR 1247 1580 0 2804 65 3 0 chr6 36164087 36164438 -146250804 + THE1A LTR MaLR 4 355 0 22478 170 15 27 chr6 36164438 36167468 -146247774 - L1PA10 LINE L1 -529 5954 2857 1931 34 0 4 chr6 36167468 36167703 -146247539 - L1PA4 LINE L1 -3 6152 5919 22478 170 15 27 chr6 36167703 36170525 -146244717 - L1PA10 LINE L1 -3626 2857 4 294 206 25 100 chr6 36170525 36170571 -146244671 - L1 LINE L1 -841 5305 5257 587 211 0 60 chr6 36170571 36170704 -146244538 - FLAM_A SINE Alu -8 125 1 294 206 25 100 chr6 36170704 36170817 -146244425 - L1 LINE L1 -889 5257 5158 243 239 0 0 chr6 36171020 36171066 -146244176 + L2 LINE L2 2608 2653 -661 * 376 310 53 26 chr6 36171044 36171234 -146244008 + MIR SINE MIR 56 252 -10 1824 126 0 0 chr6 36171253 36171524 -146243718 - L1PB3 LINE L1 -2 6152 5882 1397 220 12 0 chr6 36171524 36171870 -146243372 - L1 LINE L1 -980 5166 4817 629 198 19 31 chr6 36171828 36171990 -146243252 + L1MD2 LINE L1 6183 6342 -17 * 328 250 42 52 chr6 36172058 36172154 -146243088 + L1MEc LINE L1 1136 1230 -5166 1777 167 0 0 chr6 36172189 36172459 -146242783 - AluJo SINE Alu -18 294 25 580 276 35 4 chr6 36172486 36172740 -146242502 - L1MCa LINE L1 -5233 1193 932 1414 213 9 59 chr6 36172742 36173066 -146242176 - MER70B LTR ERVL 0 578 271 1793 198 29 0 chr6 36173489 36173838 -146241404 + MER54A LTR ERVL 4 362 -539 993 173 118 94 chr6 36173847 36174177 -146241065 + MLT1A1 LTR MaLR 28 365 0 812 262 35 21 chr6 36174323 36174613 -146240629 - HERVL LTR ERVL -1212 4442 4149 318 224 13 0 chr6 36174623 36174699 -146240543 - MER54A LTR ERVL -823 78 2 308 300 31 31 chr6 36175071 36175231 -146240011 + MLT1J2 LTR MaLR 291 450 0 198 0 0 0 chr6 36175909 36175931 -146239311 + (A)n Simple_repeat Simple_repeat 1 22 0 1848 157 15 12 chr6 36176494 36176831 -146238411 - MER44D DNA MER2_type -1 608 1 22 0 0 0 chr6 36177572 36177594 -146237648 + AT_rich Low_complexity Low_complexity 1 22 0 824 208 79 17 chr6 36177804 36178044 -146237198 - MLT1E3 LTR MaLR 0 624 370 232 319 39 10 chr6 36178044 36178251 -146236991 + L1MEc LINE L1 2503 2715 -3500 191 36 36 0 chr6 36178333 36178361 -146236881 + (CATTA)n Simple_repeat Simple_repeat 2 30 0 2059 128 7 3 chr6 36178384 36178673 -146236569 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr6 36178673 36178696 -146236546 + AT_rich Low_complexity Low_complexity 1 23 0 485 293 54 31 chr6 36178767 36178974 -146236268 - L1M4 LINE L1 -3500 2646 2445 1917 167 7 0 chr6 36178974 36179280 -146235962 - AluJb SINE Alu -4 308 1 485 293 54 31 chr6 36179280 36179590 -146235652 - L1M4 LINE L1 -3701 2445 2117 398 224 102 20 chr6 36180798 36180945 -146234297 + L1MC4 LINE L1 7758 7916 -126 34 0 0 0 chr6 36181031 36181065 -146234177 + AT_rich Low_complexity Low_complexity 1 34 0 1735 33 0 9 chr6 36181066 36181278 -146233964 - L1PA5 LINE L1 -9 6145 5936 2350 82 3 0 chr6 36181548 36181841 -146233401 - AluSq SINE Alu -19 294 1 301 291 54 14 chr6 36181848 36181996 -146233246 + L1ME4a LINE L1 5767 5920 -201 521 141 0 0 chr6 36182348 36182426 -146232816 - FLAM_C SINE Alu -33 110 33 3256 145 18 35 chr6 36182426 36185943 -146229299 + L1MA1 LINE L1 2849 6368 -3 541 262 76 24 chr6 36186938 36187148 -146228094 + L2 LINE L2 3093 3313 0 241 200 145 14 chr6 36187518 36187663 -146227579 - L1M4 LINE L1 -747 5399 5236 375 225 83 0 chr6 36187824 36187944 -146227298 - L1MCa LINE L1 -4966 1678 1549 1003 201 19 166 chr6 36187952 36188322 -146226920 + LTR41 LTR ERVL 281 537 -236 2781 108 13 55 chr6 36188322 36188794 -146226448 + MLT2A2 LTR ERVL 2 453 0 1003 201 19 166 chr6 36188794 36189000 -146226242 + LTR41 LTR ERVL 537 772 -1 451 327 100 7 chr6 36189001 36189282 -146225960 + HAL1 LINE L1 1593 1899 -608 2343 28 7 18 chr6 36189688 36189974 -146225268 + AluY SINE Alu 1 330 0 424 0 0 0 chr6 36189974 36190021 -146225221 + (TAAA)n Simple_repeat Simple_repeat 2 124 0 207 321 0 0 chr6 36190386 36190439 -146224803 - L2 LINE L2 -703 2611 2559 291 268 0 21 chr6 36191140 36191237 -146224005 - HAL1 LINE L1 -968 1539 1445 505 225 107 45 chr6 36191717 36191961 -146223281 - L1MCa LINE L1 -5395 1151 893 270 320 51 11 chr6 36192024 36192202 -146223040 - L1MCa LINE L1 -5667 875 691 268 209 29 138 chr6 36192202 36192412 -146222830 - L1M4b LINE L1 -5642 1217 1031 228 135 0 0 chr6 36192435 36192472 -146222770 + (TG)n Simple_repeat Simple_repeat 1 37 0 456 280 24 21 chr6 36192547 36192761 -146222481 - L1M4b LINE L1 -6341 514 93 883 201 168 17 chr6 36192848 36193213 -146222029 - L1MEc LINE L1 -3683 2532 2154 402 141 0 0 chr6 36193297 36193361 -146221881 - Alu SINE Alu -11 299 236 359 365 54 37 chr6 36193428 36193779 -146221463 - L1MEc LINE L1 -5670 535 179 383 265 138 33 chr6 36193824 36194005 -146221237 + L1MC4a LINE L1 6596 6795 -1013 2427 48 3 19 chr6 36194033 36194349 -146220893 + AluY SINE Alu 1 311 0 1770 284 21 40 chr6 36194417 36195314 -146219928 + L1M4 LINE L1 2258 3129 -3017 3171 65 2 62 chr6 36195314 36195794 -146219448 + L1PA8 LINE L1 5721 6171 -1 1770 284 21 40 chr6 36195794 36195902 -146219340 + L1M4 LINE L1 3129 3237 -2909 409 143 0 0 chr6 36195903 36195966 -146219276 + AluJ/FLAM SINE Alu 1 63 -249 1574 88 5 5 chr6 36195967 36196171 -146219071 - AluSp SINE Alu -109 204 1 9762 89 9 1 chr6 36197014 36198379 -146216863 + HERVFH19I LTR ERV1 6344 7719 0 3442 71 34 0 chr6 36198379 36198846 -146216396 + LTR19A LTR ERV1 1 483 -3 310 75 0 38 chr6 36198855 36198908 -146216334 - Tigger4(Zombi) DNA MER2_type -131 2600 2550 23 0 0 0 chr6 36198921 36198944 -146216298 + AT_rich Low_complexity Low_complexity 1 23 0 2943 14 0 0 chr6 36198944 36199294 -146215948 - L1HS LINE L1 -3 6152 5803 254 216 62 31 chr6 36199542 36199639 -146215603 + MIR SINE MIR 153 252 -10 669 118 31 8 chr6 36199797 36199924 -146215318 + CT-rich Low_complexity Low_complexity 3 132 0 3463 168 18 19 chr6 36199930 36200658 -146214584 - L1MB3 LINE L1 -5 6178 5452 430 284 78 56 chr6 36200662 36200894 -146214348 + L1ME3A LINE L1 5829 6065 -105 4393 127 39 88 chr6 36201834 36202838 -146212404 - Tigger3b DNA MER2_type -276 955 1 289 291 76 32 chr6 36202883 36203041 -146212201 - L1MDb LINE L1 -5507 1036 872 290 294 82 20 chr6 36203070 36203325 -146211917 - L1MDb LINE L1 -5595 935 665 427 364 44 44 chr6 36203578 36203853 -146211389 - L1MDb LINE L1 -6232 308 34 501 303 45 28 chr6 36203879 36204454 -146210788 - L1MEc LINE L1 -4760 1636 1052 2059 118 16 10 chr6 36205215 36205520 -146209722 + AluSc SINE Alu 1 307 -2 260 0 57 0 chr6 36205523 36205558 -146209684 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 3644 86 34 9 chr6 36205559 36206115 -146209127 - LTR19B LTR ERV1 -10 570 1 265 235 12 25 chr6 36206292 36206373 -146208869 + MLT1H LTR MaLR 12 91 -458 375 260 13 87 chr6 36206719 36206869 -146208373 + L2 LINE L2 3143 3281 -32 243 146 0 0 chr6 36206878 36206919 -146208323 + (TA)n Simple_repeat Simple_repeat 1 41 0 2216 113 0 0 chr6 36206919 36207203 -146208039 - AluSx SINE Alu -28 284 1 27 49 0 0 chr6 36207203 36207244 -146207998 + AT_rich Low_complexity Low_complexity 1 41 0 1097 125 40 0 chr6 36207376 36207552 -146207690 - LTR1 LTR ERV1 0 785 603 * 1182 147 87 16 chr6 36207528 36207780 -146207462 - LTR1 LTR ERV1 -515 270 1 1259 154 32 0 chr6 36208592 36208813 -146206429 - MSTB1 LTR MaLR -53 379 152 2475 115 22 6 chr6 36208872 36209228 -146206014 - THE1B LTR MaLR 0 364 3 2780 20 0 0 chr6 36209427 36209733 -146205509 - AluY SINE Alu -5 306 1 267 31 0 0 chr6 36210016 36210048 -146205194 + (TG)n Simple_repeat Simple_repeat 2 33 0 394 373 64 16 chr6 36210488 36210802 -146204440 - L2 LINE L2 -139 3174 2846 2665 26 7 0 chr6 36211149 36211457 -146203785 + AluY SINE Alu 1 310 -1 189 0 0 0 chr6 36211750 36211771 -146203471 + (T)n Simple_repeat Simple_repeat 1 21 0 351 338 58 36 chr6 36212685 36212993 -146202249 + L1M4 LINE L1 4072 4386 -1760 481 247 124 34 chr6 36213288 36213466 -146201776 - L2 LINE L2 -6 3307 3114 23 33 0 0 chr6 36213728 36213758 -146201484 + AT_rich Low_complexity Low_complexity 1 30 0 273 313 132 60 chr6 36214236 36214501 -146200741 - L2 LINE L2 -146 3167 2884 262 275 123 29 chr6 36214501 36214672 -146200570 + MLT1J LTR MaLR 2 188 -323 408 286 58 44 chr6 36214745 36214951 -146200291 + MLT1J2 LTR MaLR 240 448 -2 485 379 37 12 chr6 36215050 36215377 -146199865 - L2 LINE L2 -526 2788 2454 201 121 0 0 chr6 36216203 36216236 -146199006 + (GA)n Simple_repeat Simple_repeat 2 34 0 283 309 21 10 chr6 36216366 36216463 -146198779 + MLT1K LTR MaLR 141 238 -350 219 267 48 27 chr6 36216621 36216767 -146198475 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 246 174 0 0 chr6 36216859 36216905 -146198337 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 293 304 24 12 chr6 36217021 36217189 -146198053 + GA-rich Low_complexity Low_complexity 2 171 0 13987 127 43 5 chr6 36218386 36220709 -146194533 + Tigger1 DNA MER2_type 1 2411 -7 494 61 0 0 chr6 36222807 36222873 -146192369 + L1P LINE L1 4919 4984 -1162 * 714 254 40 0 chr6 36222872 36223096 -146192146 - L1MDa LINE L1 -3614 2601 2369 * 2613 83 26 3 chr6 36223070 36223543 -146191699 - L1P3 LINE L1 -728 5513 5028 5086 95 3 0 chr6 36223754 36224501 -146190741 - L1P3 LINE L1 -1177 5038 4290 4010 58 4 0 chr6 36224493 36225024 -146190218 + L1PA7 LINE L1 5442 5974 -180 * 1193 103 47 0 chr6 36225026 36225240 -146190002 + L1M1 LINE L1 3079 3302 -4263 509 242 43 18 chr6 36225221 36225662 -146189580 - L1MDa LINE L1 -3824 2391 1865 * 669 207 0 36 chr6 36226140 36226178 -146189064 - FLAM_A SINE Alu -176 135 97 2087 140 6 48 chr6 36226178 36226536 -146188706 + MER61A LTR ERV1 1 343 0 669 207 0 36 chr6 36226536 36226637 -146188605 - FLAM_A SINE Alu -214 97 1 21 0 0 0 chr6 36226929 36226950 -146188292 + AT_rich Low_complexity Low_complexity 1 21 0 327 258 31 0 chr6 36227215 36227312 -146187930 + L1MEc LINE L1 1695 1794 -4602 866 202 27 6 chr6 36227349 36227532 -146187710 - MER20 DNA MER1_type -3 216 30 260 226 35 18 chr6 36227537 36227654 -146187588 + MLT1H LTR MaLR 435 549 0 198 316 51 51 chr6 36227855 36228013 -146187229 - MIR SINE MIR -26 236 79 25 51 0 0 chr6 36228040 36228079 -146187163 + AT_rich Low_complexity Low_complexity 1 39 0 1953 79 0 86 chr6 36228423 36228727 -146186515 - AluSc SINE Alu -2 307 30 406 250 10 0 chr6 36229442 36229538 -146185704 + MIR SINE MIR 58 154 -108 597 223 8 0 chr6 36229620 36229750 -146185492 - MER90 LTR ERV1 -2 573 443 934 258 36 55 chr6 36229750 36230134 -146185108 - MLT2C1 LTR ERVL -18 379 3 1927 200 41 30 chr6 36230138 36230603 -146184639 - MER90 LTR ERV1 -140 474 5 22 0 0 0 chr6 36230932 36230954 -146184288 + AT_rich Low_complexity Low_complexity 1 22 0 2245 71 0 0 chr6 36230956 36231272 -146183970 + AluY SINE Alu 1 316 0 874 226 25 25 chr6 36233392 36233529 -146181713 - ORSL DNA AcHobo 0 275 139 2424 40 7 10 chr6 36233529 36233825 -146181417 - AluY SINE Alu -16 295 1 874 226 25 25 chr6 36233825 36233962 -146181280 - ORSL DNA AcHobo -135 140 1 299 333 93 0 chr6 36235530 36235638 -146179604 - L2 LINE L2 -16 3297 3180 2114 117 21 0 chr6 36238110 36238400 -146176842 + AluSq SINE Alu 1 296 -17 33 25 0 0 chr6 36238403 36238443 -146176799 + AT_rich Low_complexity Low_complexity 1 40 0 292 289 96 30 chr6 36238926 36239061 -146176181 + MIR SINE MIR 92 235 -27 1889 132 19 12 chr6 36239507 36239826 -146175416 + L1MC1 LINE L1 6013 6333 0 26 0 0 0 chr6 36239938 36239964 -146175278 + AT_rich Low_complexity Low_complexity 1 26 0 300 91 0 0 chr6 36240000 36240044 -146175198 + (TG)n Simple_repeat Simple_repeat 2 45 0 30 0 0 0 chr6 36240282 36240312 -146174930 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 36240334 36240362 -146174880 + AT_rich Low_complexity Low_complexity 1 28 0 274 208 180 14 chr6 36240436 36240519 -146174723 + AluJ/FLAM SINE Alu 3 87 -215 850 80 0 80 chr6 36240519 36240657 -146174585 + AluJo/FRAM SINE Alu 156 282 -30 252 86 0 0 chr6 36240660 36240695 -146174547 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 977 235 94 52 chr6 36240879 36241398 -146173844 + L1MC5 LINE L1 7377 7917 -44 185 379 0 0 chr6 36241756 36241814 -146173428 - L2 LINE L2 -81 3191 3134 611 298 107 32 chr6 36242147 36242811 -146172431 + HAL1 LINE L1 1069 1782 -725 287 222 42 127 chr6 36242905 36243094 -146172148 + HAL1b LINE L1 712 884 -464 689 284 53 13 chr6 36243268 36243493 -146171749 - LTR16A LTR ERVL -185 265 32 3975 131 56 9 chr6 36243604 36244091 -146171151 + L1MA7 LINE L1 5594 6122 -169 1533 188 83 22 chr6 36244091 36244415 -146170827 + MER2 DNA MER2_type 1 344 0 3975 131 56 9 chr6 36244415 36244592 -146170650 + L1MA7 LINE L1 6122 6289 -2 299 216 14 40 chr6 36244918 36244992 -146170250 - MLT1J1 LTR MaLR -308 138 67 421 189 0 0 chr6 36245338 36245412 -146169830 + MER30 DNA MER1_type 157 230 0 195 100 0 0 chr6 36245948 36245978 -146169264 + (CA)n Simple_repeat Simple_repeat 2 31 0 252 296 0 38 chr6 36246016 36246259 -146168983 + GA-rich Low_complexity Low_complexity 1 233 0 1536 114 0 0 chr6 36247686 36247888 -146167354 - AluSg/x SINE Alu -13 299 98 1906 185 72 5 chr6 36248835 36249225 -146166017 + MSTA LTR MaLR 1 416 -12 597 113 0 0 chr6 36249225 36249305 -146165937 + MSTB LTR MaLR 347 426 0 215 316 25 13 chr6 36249955 36250034 -146165208 - L2 LINE L2 -59 3254 3175 239 324 108 0 chr6 36251628 36251730 -146163512 - L2 LINE L2 0 3313 3201 197 321 75 25 chr6 36253271 36253430 -146161812 + MIR SINE MIR 90 256 -6 203 360 11 11 chr6 36254648 36254737 -146160505 + MIR SINE MIR 58 146 -62 1979 231 118 4 chr6 36254737 36255239 -146160003 - Zaphod DNA AcHobo -3384 647 89 1805 185 3 10 chr6 36255938 36256252 -146158990 - AluJo SINE Alu 0 312 1 1944 134 3 40 chr6 36256324 36256645 -146158597 + AluSq SINE Alu 1 309 -4 2342 164 17 0 chr6 36258230 36258632 -146156610 + L1MA7 LINE L1 5424 5832 -459 941 199 68 38 chr6 36258633 36258948 -146156294 - MER4C LTR ERV1 0 695 276 234 186 0 0 chr6 36259021 36259064 -146156178 + L2 LINE L2 2611 2653 -661 436 292 58 7 chr6 36259093 36259230 -146156012 + MIR SINE MIR 104 247 -15 22 0 0 0 chr6 36259230 36259252 -146155990 + AT_rich Low_complexity Low_complexity 1 22 0 1667 138 0 46 chr6 36259252 36259534 -146155708 - L1PB3 LINE L1 -4 6150 5882 1631 198 14 9 chr6 36259534 36259882 -146155360 - L1M4 LINE L1 -980 5166 4817 745 169 58 35 chr6 36259840 36260012 -146155230 + L1MD2 LINE L1 6183 6358 -1 * 308 250 11 23 chr6 36260061 36260149 -146155093 + L1MCa LINE L1 1138 1224 -5202 1314 205 51 18 chr6 36260174 36260478 -146154764 - AluJo SINE Alu 0 314 2 745 269 40 4 chr6 36260495 36260748 -146154494 - L1MCa LINE L1 -5233 1193 932 1638 168 9 87 chr6 36260750 36261084 -146154158 - MER70B LTR ERVL 0 578 271 1580 167 106 73 chr6 36261232 36261504 -146153738 - MER4A LTR ERV1 -21 444 281 2286 105 0 22 chr6 36261504 36261819 -146153423 + AluSx SINE Alu 1 308 -4 1580 167 106 73 chr6 36261819 36262110 -146153132 - MER4A LTR ERV1 -184 281 1 263 320 77 34 chr6 36262355 36262589 -146152653 + ERVL LTR ERVL 5137 5380 -384 344 315 31 31 chr6 36262723 36262885 -146152357 + MLT1J2 LTR MaLR 289 450 0 21 0 0 0 chr6 36263568 36263589 -146151653 + AT_rich Low_complexity Low_complexity 1 21 0 1748 125 30 106 chr6 36264137 36264504 -146150738 - MER44D DNA MER2_type 0 609 1 2007 124 10 3 chr6 36265202 36265501 -146149741 + LTR43 LTR ERV1 302 602 0 27 49 0 0 chr6 36265501 36265542 -146149700 + AT_rich Low_complexity Low_complexity 1 41 0 1978 222 69 49 chr6 36265720 36266233 -146149009 - MLT1E3 LTR MaLR 0 624 96 3418 109 45 52 chr6 36266233 36266748 -146148494 + MER9 LTR ERVK 1 511 0 1978 222 69 49 chr6 36266748 36266843 -146148399 - MLT1E3 LTR MaLR -528 96 4 404 250 75 8 chr6 36266859 36266979 -146148263 - MLT1E3-int LTR MaLR -5 1730 1603 2092 97 0 8 chr6 36267444 36267711 -146147531 - AluSx SINE Alu -22 290 26 1534 219 98 23 chr6 36267737 36268135 -146147107 - MSTC LTR MaLR 0 428 1 5522 237 97 51 chr6 36268135 36268716 -146146526 - MSTC-int LTR MaLR 0 1735 1182 8463 51 1 0 chr6 36268716 36269684 -146145558 - LTR5 LTR ERVK 0 969 1 5522 237 97 51 chr6 36269684 36270759 -146144483 - MSTC-int LTR MaLR -553 1182 2 1351 206 152 51 chr6 36270761 36271150 -146144092 - MSTC LTR MaLR 0 428 1 692 225 19 43 chr6 36271676 36271885 -146143357 - L1MDa LINE L1 -4147 2393 2190 882 125 0 0 chr6 36271895 36272015 -146143227 + MSTB LTR MaLR 8 127 -299 2707 39 0 0 chr6 36272104 36272413 -146142829 - AluY SINE Alu -2 309 1 4524 97 10 0 chr6 36272416 36273017 -146142225 - L1PA13 LINE L1 0 6163 5557 4111 194 35 17 chr6 36273017 36273841 -146141401 + L1P LINE L1 1460 2298 -3848 379 256 37 30 chr6 36273901 36274065 -146141177 - L1MDa LINE L1 -3834 2706 2542 405 245 87 72 chr6 36275041 36275249 -146139993 + L2 LINE L2 3103 3313 0 238 223 176 7 chr6 36275615 36275763 -146139479 - L1M4 LINE L1 -747 5399 5227 225 220 9 73 chr6 36275871 36275980 -146139262 - L1MDa LINE L1 -4925 1615 1514 1207 44 0 0 chr6 36277136 36277272 -146137970 + AluSq/x SINE Alu 1 136 -177 194 330 70 35 chr6 36277639 36277754 -146137488 + MIR SINE MIR 84 202 -60 39 38 0 38 chr6 36278124 36278157 -146137085 + AT_rich Low_complexity Low_complexity 1 34 -42 6335 72 65 44 chr6 36278157 36279942 -146135300 + L1PA11 LINE L1 4368 6169 -5 39 38 0 38 chr6 36279942 36279987 -146135255 + AT_rich Low_complexity Low_complexity 34 76 0 352 235 107 7 chr6 36280018 36280167 -146135075 - MIR SINE MIR -25 237 74 289 309 41 16 chr6 36281029 36281152 -146134090 - L2 LINE L2 -9 3304 3179 381 284 115 0 chr6 36281175 36281323 -146133919 - L2 LINE L2 -324 2989 2825 1721 155 24 17 chr6 36281617 36281908 -146133334 + AluJo SINE Alu 1 293 -19 628 176 0 73 chr6 36283019 36283155 -146132087 - FLAM_C SINE Alu -6 137 12 4022 182 72 25 chr6 36283225 36284000 -146131242 - MER21B LTR ERV1 -51 812 1 258 300 50 17 chr6 36286218 36286338 -146128904 + L1MCc LINE L1 17 140 -6283 248 226 98 98 chr6 36286417 36286581 -146128661 + L1MCc LINE L1 263 426 -5997 1538 100 132 24 chr6 36286742 36287035 -146128207 - AluSx SINE Alu 0 325 6 27 0 0 0 chr6 36287167 36287194 -146128048 + AT_rich Low_complexity Low_complexity 1 27 0 192 238 0 0 chr6 36287194 36287236 -146128006 - MIR SINE MIR -16 246 205 691 167 42 22 chr6 36287246 36287461 -146127781 + AluJb SINE Alu 4 294 -18 210 286 200 0 chr6 36287462 36287567 -146127675 - MIR SINE MIR -126 136 11 346 347 66 26 chr6 36289034 36289412 -146125830 - L2 LINE L2 -463 2851 2459 2185 184 62 44 chr6 36289533 36289919 -146125323 + MLT1D LTR MaLR 1 399 -106 1177 264 101 10 chr6 36289919 36290317 -146124925 - MER57B LTR ERV1 0 434 1 2185 184 62 44 chr6 36290317 36290426 -146124816 + MLT1D LTR MaLR 399 505 0 366 366 0 7 chr6 36290440 36290582 -146124660 + MIR SINE MIR 8 148 -114 1045 218 159 37 chr6 36290662 36290988 -146124254 - Tigger5 DNA MER2_type 0 2323 1 35 54 0 0 chr6 36291020 36291076 -146124166 + AT_rich Low_complexity Low_complexity 1 56 0 2316 103 0 3 chr6 36291095 36291396 -146123846 - AluY SINE Alu 0 311 12 1139 202 54 4 chr6 36292456 36292714 -146122528 + L1M4 LINE L1 3930 4200 -1946 463 222 96 7 chr6 36292708 36292843 -146122399 + L1M4 LINE L1 4992 5138 -1008 * 2402 174 71 6 chr6 36292939 36293779 -146121463 - L1MD1 LINE L1 -3 6239 5350 * 18178 191 30 14 chr6 36293768 36294917 -146120325 - L1PA13 LINE L1 -1478 5319 4190 279 0 0 0 chr6 36294917 36294948 -146120294 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 18178 191 30 14 chr6 36294948 36299017 -146116225 - L1PA13 LINE L1 -2607 4190 1 318 311 128 27 chr6 36299024 36299243 -146115999 + L1M4c LINE L1 1412 1652 -4732 1699 187 49 11 chr6 36299256 36299603 -146115639 + MLT1A1 LTR MaLR 6 365 0 5419 199 60 24 chr6 36299681 36301033 -146114209 - Charlie1a DNA MER1_type -16 1439 3 2320 91 0 0 chr6 36301424 36301710 -146113532 - AluSc SINE Alu -21 288 3 2456 194 47 112 chr6 36301751 36301794 -146113448 + L1MC5 LINE L1 6634 6678 -1283 2957 137 35 12 chr6 36301794 36302276 -146112966 + LTR42 LTR ERVL 3 495 0 2456 194 47 112 chr6 36302276 36303186 -146112056 + L1MC5 LINE L1 6678 7525 -436 227 289 107 44 chr6 36303256 36303415 -146111827 + L1ME3A LINE L1 5965 6133 -37 190 328 17 0 chr6 36306387 36306445 -146108797 - L2 LINE L2 -213 3059 3001 634 151 63 32 chr6 36307089 36307215 -146108027 + LTR42 LTR ERVL 26 155 -340 702 117 0 0 chr6 36308451 36308554 -146106688 - L1MA6 LINE L1 -5 6295 6193 1777 141 24 0 chr6 36308554 36308844 -146106398 + L1MA6 LINE L1 5780 6076 -224 774 173 73 0 chr6 36308964 36309114 -146106128 + MLT1A1 LTR MaLR 1 161 -204 1396 207 4 22 chr6 36309123 36309398 -146105844 + AluJo SINE Alu 11 280 -32 204 40 0 0 chr6 36309398 36309423 -146105819 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 628 173 32 0 chr6 36309771 36309900 -146105342 + MSTB2 LTR MaLR 236 457 0 304 212 162 10 chr6 36311441 36311540 -146103702 - MIR SINE MIR -77 185 72 330 273 75 0 chr6 36312958 36313119 -146102123 - L1P LINE L1 -2340 3806 3634 207 0 0 0 chr6 36313152 36313175 -146102067 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1852 139 33 0 chr6 36313177 36313450 -146101792 - AluJo SINE Alu -30 282 1 2297 116 0 0 chr6 36313537 36313839 -146101403 - AluSx SINE Alu -10 302 1 216 0 0 0 chr6 36314045 36314069 -146101173 + (T)n Simple_repeat Simple_repeat 1 24 0 229 309 104 30 chr6 36314713 36315147 -146100095 - L1M4 LINE L1 -3546 2600 2135 24 67 0 0 chr6 36315233 36315278 -146099964 + AT_rich Low_complexity Low_complexity 1 45 0 824 283 65 40 chr6 36315651 36316050 -146099192 + L1ME4a LINE L1 5404 5812 -1996 22 0 0 0 chr6 36316050 36316072 -146099170 + AT_rich Low_complexity Low_complexity 1 22 0 236 260 40 30 chr6 36316227 36316327 -146098915 + L1MC4a LINE L1 6075 6175 -1633 304 222 12 0 chr6 36316330 36316411 -146098831 - L2 LINE L2 -1477 1837 1756 399 299 43 27 chr6 36316413 36316600 -146098642 + MIR SINE MIR 66 255 -7 810 251 70 4 chr6 36318644 36318887 -146096355 + MIR SINE MIR 2 260 -2 427 237 53 8 chr6 36319045 36319176 -146096066 + L1ME4a LINE L1 5962 6098 -23 198 0 0 0 chr6 36319292 36319314 -146095928 + (CACCC)n Simple_repeat Simple_repeat 3 24 0 250 360 64 23 chr6 36321655 36321827 -146093415 + L2 LINE L2 3079 3257 -15 1576 217 50 39 chr6 36321866 36322323 -146092919 + L1MC5 LINE L1 7012 7473 -488 180 77 0 0 chr6 36322347 36322373 -146092869 + (TGGA)n Simple_repeat Simple_repeat 4 29 0 1324 202 27 60 chr6 36322373 36322819 -146092423 + L1MC5 LINE L1 7483 7913 -48 5130 166 40 20 chr6 36323766 36324350 -146090892 + L1MB3 LINE L1 4986 5557 -626 2157 130 75 20 chr6 36324350 36324695 -146090547 + THE1B LTR MaLR 1 364 0 5130 166 40 20 chr6 36324695 36325295 -146089947 + L1MB3 LINE L1 5557 6183 0 297 170 19 0 chr6 36325589 36325642 -146089600 + L1M3 LINE L1 5742 5795 -388 2174 145 31 0 chr6 36327089 36327413 -146087829 - MER7A DNA MER2_type -14 332 1 332 164 0 60 chr6 36327534 36327601 -146087641 - MER96 DNA MER1_type? -111 64 2 180 0 0 0 chr6 36329081 36329101 -146086141 + (A)n Simple_repeat Simple_repeat 1 20 0 2415 68 0 3 chr6 36329742 36330037 -146085205 + AluSq SINE Alu 1 294 -19 1695 100 0 0 chr6 36331854 36332074 -146083168 - AluSg/x SINE Alu -12 298 79 272 285 109 0 chr6 36333986 36334134 -146081108 - MIR SINE MIR -57 205 44 506 288 34 39 chr6 36336715 36336920 -146078322 + MIR SINE MIR 3 206 -56 914 126 0 0 chr6 36336956 36337083 -146078159 + FLAM_C SINE Alu 1 127 -16 1959 162 10 0 chr6 36337154 36337462 -146077780 + AluJb SINE Alu 1 311 -1 227 264 0 0 chr6 36337867 36337920 -146077322 + (CA)n Simple_repeat Simple_repeat 1 53 0 2309 64 0 34 chr6 36340076 36340372 -146074870 + AluY SINE Alu 1 286 -25 231 114 0 0 chr6 36340388 36340423 -146074819 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 500 222 47 74 chr6 36342197 36342407 -146072835 + MIR3 SINE MIR 1 203 -5 321 67 0 0 chr6 36342541 36342590 -146072652 + (GA)n Simple_repeat Simple_repeat 1 49 0 521 241 154 25 chr6 36345821 36345983 -146069259 + MIR3 SINE MIR 2 184 -24 333 183 192 8 chr6 36346625 36346745 -146068497 + MIR3 SINE MIR 63 204 -4 2136 122 10 3 chr6 36347535 36347839 -146067403 + AluSx SINE Alu 1 306 -6 286 177 32 0 chr6 36348153 36348215 -146067027 + MIR SINE MIR 120 183 -79 267 278 0 111 chr6 36349209 36349353 -146065889 + MER94 DNA DNA 3 130 -4 1789 162 0 53 chr6 36349371 36349692 -146065550 + AluJb SINE Alu 2 305 -7 392 272 152 38 chr6 36349707 36349891 -146065351 - MER63A DNA MER1_type -4 206 2 1998 135 3 7 chr6 36350757 36351054 -146064188 + AluJo SINE Alu 17 312 0 304 300 138 7 chr6 36351072 36351214 -146064028 - MIR SINE MIR -86 122 7 223 254 84 0 chr6 36351390 36351461 -146063781 + MIR3 SINE MIR 120 196 -12 431 280 58 78 chr6 36351661 36352107 -146063135 + L1ME LINE L1 51 487 -5583 2275 84 27 3 chr6 36352126 36352424 -146062818 + AluSq SINE Alu 1 305 -8 437 240 97 77 chr6 36352645 36352841 -146062401 - MER63A DNA MER1_type -1 209 10 1851 151 44 0 chr6 36353082 36353380 -146061862 + AluJb SINE Alu 1 311 -1 625 192 0 0 chr6 36353505 36353609 -146061633 + AluJb SINE Alu 190 293 -19 1111 284 39 46 chr6 36353688 36354476 -146060766 + L1M4 LINE L1 3005 3787 -2359 1651 135 0 39 chr6 36354476 36354735 -146060507 + AluJo SINE Alu 40 288 -24 195 139 0 0 chr6 36354740 36354776 -146060466 + (TAA)n Simple_repeat Simple_repeat 3 38 0 309 293 93 46 chr6 36354776 36355035 -146060207 + L1M4 LINE L1 3781 4051 -2095 1112 164 14 51 chr6 36355097 36355311 -146059931 + AluJo SINE Alu 91 296 -16 2750 129 43 0 chr6 36356003 36356399 -146058843 - MLT2D LTR ERVL 0 414 2 252 296 60 55 chr6 36356706 36356905 -146058337 + HERV16 LTR ERVL 375 574 -4422 282 161 177 16 chr6 36356985 36357047 -146058195 - MLT1F1 LTR MaLR -1 566 495 527 281 15 10 chr6 36357053 36357249 -146057993 + L1MC4 LINE L1 7702 7898 -144 * 543 232 30 24 chr6 36357246 36357414 -146057828 + L1ME3 LINE L1 5743 5911 -251 446 203 0 62 chr6 36357414 36357531 -146057711 - MLT1H1 LTR MaLR 0 555 433 572 291 62 29 chr6 36357587 36357797 -146057445 + LTR67 LTR ERVL 6 222 -335 192 77 0 0 chr6 36357885 36357911 -146057331 + (T)n Simple_repeat Simple_repeat 1 26 0 505 207 117 27 chr6 36358154 36358342 -146056900 - LTR37B LTR ERV1 -65 403 199 578 206 46 0 chr6 36360046 36360177 -146055065 + Charlie2 DNA MER1_type 1855 1991 -871 1314 167 9 17 chr6 36360182 36360415 -146054827 + AluJo SINE Alu 42 272 -40 8396 201 71 59 chr6 36360415 36362583 -146052659 + L1MDa LINE L1 379 2520 -4020 2145 96 10 36 chr6 36362583 36362886 -146052356 + AluSc SINE Alu 2 296 -13 8396 201 71 59 chr6 36362886 36363390 -146051852 + L1MDa LINE L1 2520 3017 -3523 2802 66 28 0 chr6 36363390 36363752 -146051490 - L1PA13 LINE L1 0 6163 5792 2185 112 30 7 chr6 36363762 36363934 -146051308 - AluSq SINE Alu -11 302 119 351 0 0 0 chr6 36363934 36363973 -146051269 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2185 112 30 7 chr6 36363973 36364095 -146051147 - AluSq SINE Alu -194 119 1 8396 201 71 59 chr6 36364095 36364412 -146050830 + L1MDa LINE L1 3025 3337 -3203 6103 62 8 0 chr6 36364412 36365141 -146050101 - L1PA10 LINE L1 -17 6151 5417 8396 201 71 59 chr6 36365141 36366454 -146048788 + L1MDa LINE L1 3337 4760 -1780 2588 49 20 0 chr6 36366454 36366759 -146048483 - AluY SINE Alu 0 311 1 8396 201 71 59 chr6 36366759 36367089 -146048153 + L1MDa LINE L1 4760 5085 -1455 2637 48 0 10 chr6 36369013 36369327 -146045915 - AluY SINE Alu 0 311 1 1091 222 6 88 chr6 36370686 36371038 -146044204 + L1MDa LINE L1 5073 5395 -1145 * 1510 151 8 4 chr6 36371038 36371277 -146043965 + AluJo SINE Alu 58 297 -15 3416 151 26 86 chr6 36371277 36371827 -146043415 + L1MD1 LINE L1 4932 5400 -842 2237 108 7 0 chr6 36371827 36372124 -146043118 + AluSp SINE Alu 1 299 -14 3416 151 26 86 chr6 36372124 36372603 -146042639 + L1MD1 LINE L1 5400 5906 -336 550 159 0 0 chr6 36372603 36372691 -146042551 + AluJ/FRAM SINE Alu 220 307 -5 450 216 43 0 chr6 36372692 36372808 -146042434 + L1MDa LINE L1 5389 5509 -1031 2131 123 10 0 chr6 36372812 36373120 -146042122 + AluSx SINE Alu 1 311 -1 1417 160 24 86 chr6 36373148 36373485 -146041757 + L1MD1 LINE L1 5916 6231 -11 235 240 13 40 chr6 36373486 36373561 -146041681 + Charlie2 DNA MER1_type 2781 2853 -9 2062 165 43 8 chr6 36373817 36374192 -146041050 + MLT1B LTR MaLR 3 390 0 697 267 117 6 chr6 36374438 36374821 -146040421 + LTR16C LTR ERVL 37 487 -4 934 195 0 0 chr6 36375404 36375584 -146039658 - AluJb SINE Alu 0 308 129 806 161 44 7 chr6 36375600 36375737 -146039505 - FLAM_C SINE Alu 0 143 2 2407 65 0 3 chr6 36376061 36376354 -146038888 - AluY SINE Alu -19 292 1 457 57 14 14 chr6 36376801 36376871 -146038371 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 254 28 0 28 chr6 36378751 36378787 -146036455 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1575 221 49 44 chr6 36379223 36379613 -146035629 + MSTD LTR MaLR 5 396 0 1998 157 3 0 chr6 36379706 36380012 -146035230 - AluJb SINE Alu -4 308 2 1080 307 46 28 chr6 36380463 36381118 -146034124 - L1ME3 LINE L1 -177 5985 5319 673 269 135 57 chr6 36381133 36381941 -146033301 - L1ME3 LINE L1 -873 5273 4379 2797 129 18 34 chr6 36381941 36382157 -146033085 - Tigger2a DNA MER2_type -2274 434 227 1806 151 24 0 chr6 36382157 36382448 -146032794 + AluJo SINE Alu 1 298 -14 2797 129 18 34 chr6 36382448 36382672 -146032570 - Tigger2a DNA MER2_type -2481 227 1 673 269 135 57 chr6 36382672 36382812 -146032430 - L1ME3 LINE L1 -1767 4379 4251 521 233 89 50 chr6 36383700 36383902 -146031340 + MER112 DNA MER1_type 37 246 -14 2061 114 0 0 chr6 36384050 36384339 -146030903 + AluSx SINE Alu 6 294 -18 203 308 0 31 chr6 36384750 36384815 -146030427 + C-rich Low_complexity Low_complexity 3 65 0 639 193 76 10 chr6 36386510 36386778 -146028464 + MER69 DNA AcHobo 505 830 -1696 4178 208 96 46 chr6 36388778 36389270 -146025972 - Charlie2b DNA MER1_type -103 2759 2293 1863 133 7 40 chr6 36389270 36389570 -146025672 + AluJb SINE Alu 1 290 -22 4178 208 96 46 chr6 36389570 36389625 -146025617 - Charlie2b DNA MER1_type -569 2293 2242 1795 157 132 0 chr6 36389625 36389944 -146025298 - MER46B DNA MER2_type 0 236 1 4178 208 96 46 chr6 36389944 36391229 -146024013 - Charlie2b DNA MER1_type -620 2242 829 445 173 0 0 chr6 36391229 36391304 -146023938 + AluJ/FLAM SINE Alu 1 75 -237 1158 241 102 64 chr6 36391349 36391568 -146023674 - Charlie2b DNA MER1_type -1943 839 630 715 191 0 59 chr6 36391568 36391704 -146023538 + FLAM_A SINE Alu 5 132 -1 1158 241 102 64 chr6 36391704 36391901 -146023341 - Charlie2b DNA MER1_type -2152 630 407 801 169 0 82 chr6 36391901 36392085 -146023157 - MER20 DNA MER1_type 0 219 51 2904 105 60 35 chr6 36392085 36392569 -146022673 + L1MC2 LINE L1 5847 6342 -2 1157 202 106 19 chr6 36393756 36394076 -146021166 + MSTD LTR MaLR 1 396 0 1181 176 133 50 chr6 36394110 36394411 -146020831 - MER44D DNA MER2_type 0 609 14 266 325 45 39 chr6 36395140 36395294 -146019948 - L2 LINE L2 -199 3073 2919 1679 160 35 0 chr6 36395344 36395631 -146019611 + AluJb SINE Alu 1 297 -15 5778 165 69 61 chr6 36395930 36396081 -146019161 - Charlie1 DNA MER1_type -557 2204 2056 1575 189 3 17 chr6 36396081 36396372 -146018870 + AluJo SINE Alu 3 289 -23 5778 165 69 61 chr6 36396372 36398282 -146016960 - Charlie1 DNA MER1_type -705 2056 1 351 310 29 12 chr6 36398294 36398465 -146016777 + L1M4 LINE L1 4910 5083 -1063 286 288 73 80 chr6 36398459 36398861 -146016381 + L1M4 LINE L1 5475 5879 -305 * 315 0 0 0 chr6 36399092 36399127 -146016115 + (TA)n Simple_repeat Simple_repeat 2 36 0 293 330 26 35 chr6 36399633 36399748 -146015494 + MIR3 SINE MIR 68 181 -27 302 390 19 0 chr6 36399947 36400052 -146015190 - L2 LINE L2 -17 3255 3149 408 266 11 0 chr6 36400582 36400676 -146014566 + Charlie7 DNA MER1_type 1 95 -2517 2360 93 0 0 chr6 36401101 36401402 -146013840 + AluSg SINE Alu 1 301 -9 426 309 40 27 chr6 36401632 36401781 -146013461 - MER5A DNA MER1_type -3 186 36 234 0 0 0 chr6 36403341 36403367 -146011875 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 437 329 93 33 chr6 36405177 36405639 -146009603 + L1MDa LINE L1 1226 1699 -4841 1440 96 59 36 chr6 36405679 36405899 -146009343 + AluSx SINE Alu 3 227 -85 356 325 63 0 chr6 36405932 36406123 -146009119 + HAL1 LINE L1 1451 1653 -854 7971 169 19 24 chr6 36406690 36408190 -146007052 - L1PA13 LINE L1 -5 6158 4659 2105 96 3 14 chr6 36408190 36408483 -146006759 + AluSp SINE Alu 1 290 -23 7971 169 19 24 chr6 36408483 36409219 -146006023 - L1PA13 LINE L1 -1504 4659 3921 2124 105 7 24 chr6 36409335 36409631 -146005611 - AluSx SINE Alu -21 291 1 2018 134 3 0 chr6 36409638 36409961 -146005281 - AluSq SINE Alu 0 324 1 2339 109 0 6 chr6 36409994 36410307 -146004935 + AluSq SINE Alu 1 311 -2 336 301 22 11 chr6 36410354 36410537 -146004705 + L1MDa LINE L1 2819 3003 -3537 864 235 38 31 chr6 36410606 36410895 -146004347 + L1MC4 LINE L1 7585 7875 -167 351 171 198 36 chr6 36411028 36411139 -146004103 + L1MC4 LINE L1 7914 8042 0 601 258 99 22 chr6 36411154 36411468 -146003774 + L1MDa LINE L1 3274 3611 -2929 406 300 58 28 chr6 36411483 36411880 -146003362 + L1MDa LINE L1 3989 4397 -2143 2623 212 35 48 chr6 36411893 36412513 -146002729 + L1MDa LINE L1 26 725 -5815 2402 141 72 27 chr6 36412511 36413022 -146002220 + L1MDa LINE L1 1988 2521 -4019 * 1117 199 35 100 chr6 36413028 36413413 -146001829 + MLT1A2 LTR MaLR 1 363 -11 807 199 6 0 chr6 36413427 36413583 -146001659 + L1MA3 LINE L1 6147 6303 -2 231 170 0 0 chr6 36413599 36413646 -146001596 + L1MDa LINE L1 2530 2576 -3964 255 175 0 0 chr6 36413654 36413694 -146001548 + Alu SINE Alu 1 40 -261 1794 218 22 91 chr6 36413709 36413765 -146001477 + L1MDa LINE L1 2605 2663 -3877 1842 144 44 13 chr6 36413765 36414063 -146001179 + AluSx SINE Alu 1 307 -5 1794 218 22 91 chr6 36414063 36414423 -146000819 + L1MDa LINE L1 2663 2915 -3625 2380 65 7 10 chr6 36414423 36414733 -146000509 + AluY SINE Alu 1 309 -2 1794 218 22 91 chr6 36414733 36415028 -146000214 + L1MDa LINE L1 2915 3229 -3311 3948 140 59 26 chr6 36415042 36415736 -145999506 - L1PA15 LINE L1 -113 6052 5336 1074 201 44 17 chr6 36415704 36415997 -145999245 + L1MD1 LINE L1 3069 3369 -3171 * 7328 97 11 18 chr6 36415994 36416275 -145998967 + L1MA1 LINE L1 5196 5477 -825 2235 107 0 0 chr6 36416275 36416566 -145998676 + AluSx SINE Alu 1 291 -21 7328 97 11 18 chr6 36416566 36417392 -145997850 + L1MA1 LINE L1 5477 6295 -7 356 162 192 0 chr6 36417389 36417488 -145997754 + L1MD1 LINE L1 3317 3434 -3106 * 714 88 0 39 chr6 36417495 36417597 -145997645 + FLAM_A SINE Alu 33 130 -12 272 197 46 37 chr6 36417603 36417676 -145997566 + L1MD1 LINE L1 3441 3512 -3028 1836 149 0 4 chr6 36417676 36417951 -145997291 + AluSx SINE Alu 1 274 -38 272 197 46 37 chr6 36417951 36418039 -145997203 + L1MD1 LINE L1 3512 3672 -2868 4563 155 66 48 chr6 36418180 36418502 -145996740 + L1MD1 LINE L1 5360 5675 -961 1745 126 152 4 chr6 36418502 36418765 -145996477 + AluSx SINE Alu 1 302 0 4563 155 66 48 chr6 36418765 36418963 -145996279 + L1MD1 LINE L1 5675 5868 -768 2456 74 0 0 chr6 36418963 36419261 -145995981 + AluY SINE Alu 1 298 -13 4563 155 66 48 chr6 36419261 36419975 -145995267 + L1MD1 LINE L1 5868 6617 -19 264 315 144 17 chr6 36419954 36420172 -145995070 + L1MDa LINE L1 4400 4667 -1873 * 210 118 0 0 chr6 36420172 36420206 -145995036 + (CAA)n Simple_repeat Simple_repeat 1 34 0 264 315 144 17 chr6 36420206 36420285 -145994957 + L1MDa LINE L1 4667 4735 -1805 819 192 40 48 chr6 36420300 36420568 -145994674 + L1MB2 LINE L1 5223 5489 -682 373 157 0 22 chr6 36420568 36420657 -145994585 + GA-rich Low_complexity Low_complexity 3 89 0 3871 168 18 6 chr6 36420658 36421324 -145993918 + L1MB2 LINE L1 5491 6164 -7 259 329 48 28 chr6 36421328 36421617 -145993625 + L1MDa LINE L1 4712 5006 -1534 557 302 77 25 chr6 36421794 36422224 -145993018 + LTR33 LTR ERVL 10 513 -8 258 259 17 0 chr6 36422904 36422962 -145992280 + L3 LINE CR1 1503 1561 -16 302 241 28 0 chr6 36423044 36423189 -145992053 + CT-rich Low_complexity Low_complexity 1 149 0 222 37 0 0 chr6 36423204 36423231 -145992011 + (CA)n Simple_repeat Simple_repeat 1 27 0 2292 106 3 6 chr6 36423662 36423974 -145991268 + AluSq SINE Alu 1 311 -2 186 43 0 0 chr6 36424066 36424089 -145991153 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 527 297 18 6 chr6 36424546 36424711 -145990531 + MIR SINE MIR 86 252 -10 438 208 17 42 chr6 36424873 36424993 -145990249 - MIR SINE MIR -4 258 142 680 75 0 0 chr6 36427496 36427576 -145987666 - MADE1 DNA Mariner 0 80 1 440 312 32 48 chr6 36428619 36428805 -145986437 - MER5A DNA MER1_type -6 183 1 205 281 122 0 chr6 36428892 36428974 -145986268 + MER5B DNA MER1_type 27 118 -60 231 74 74 0 chr6 36429592 36429646 -145985596 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 1475 219 119 29 chr6 36429682 36430103 -145985139 + MER21B LTR ERV1 23 481 -382 1163 124 88 0 chr6 36430119 36430313 -145984929 + L1MA5A LINE L1 6068 6278 -19 1231 259 37 25 chr6 36430313 36430668 -145984574 + MER21B LTR ERV1 454 812 -51 498 297 101 0 chr6 36431029 36431167 -145984075 - L2 LINE L2 -4 3268 3117 24 0 0 0 chr6 36432485 36432509 -145982733 + AT_rich Low_complexity Low_complexity 1 24 0 5137 124 22 2 chr6 36432509 36433297 -145981945 - L1PA15 LINE L1 -6 6159 5357 1881 140 13 48 chr6 36433325 36433639 -145981603 - AluSx SINE Alu -9 303 1 2487 72 7 0 chr6 36434187 36434491 -145980751 + AluSx SINE Alu 1 306 -6 216 313 0 0 chr6 36434586 36434650 -145980592 + (CA)n Simple_repeat Simple_repeat 2 65 0 385 315 10 0 chr6 36436426 36436545 -145978697 - MIR SINE MIR -62 146 30 514 287 61 45 chr6 36436545 36437136 -145978106 + L1M4 LINE L1 4336 5561 -593 568 178 0 10 chr6 36437547 36437648 -145977594 - MIR3 SINE MIR -28 180 81 355 221 0 26 chr6 36437907 36437984 -145977258 - MIR SINE MIR -15 247 173 328 241 62 45 chr6 36438063 36438175 -145977067 - L1M4 LINE L1 -618 5556 5443 509 252 41 27 chr6 36438175 36438322 -145976920 - MIR SINE MIR -98 164 16 255 61 0 0 chr6 36439476 36439509 -145975733 + (TCC)n Simple_repeat Simple_repeat 1 33 0 218 216 20 20 chr6 36440858 36440909 -145974333 - L2 LINE L2 0 3313 3263 2050 119 20 3 chr6 36441439 36441732 -145973510 + AluSg SINE Alu 1 298 -12 1930 133 14 3 chr6 36441912 36442197 -145973045 + AluJo SINE Alu 1 288 -24 22 25 0 25 chr6 36442197 36442209 -145973033 + AT_rich Low_complexity Low_complexity 1 12 -27 2272 106 0 6 chr6 36442209 36442520 -145972722 + AluSx SINE Alu 1 309 -3 22 25 0 25 chr6 36442520 36442547 -145972695 + AT_rich Low_complexity Low_complexity 12 39 0 599 326 101 0 chr6 36442557 36442735 -145972507 + MER91A DNA MER1_type 1 196 0 191 306 162 36 chr6 36443064 36443175 -145972067 - MIR3 SINE MIR -32 176 52 454 246 172 0 chr6 36443207 36443341 -145971901 + MIR SINE MIR 52 208 -54 233 358 57 24 chr6 36444094 36444217 -145971025 - L2 LINE L2 -4 3268 3142 196 313 116 27 chr6 36444565 36444712 -145970530 - L2 LINE L2 -494 2820 2661 494 351 68 20 chr6 36444806 36445264 -145969978 - L2 LINE L2 -696 2618 2139 386 267 38 8 chr6 36445308 36445439 -145969803 - LTR33A LTR ERVL -9 514 380 389 281 45 20 chr6 36445718 36445900 -145969342 - LTR33A LTR ERVL -363 167 1 358 315 84 11 chr6 36445985 36446258 -145968984 - L2 LINE L2 -1299 2015 1723 906 171 73 6 chr6 36446364 36446528 -145968714 - FAM SINE Alu 0 175 1 842 172 55 0 chr6 36446860 36447005 -145968237 - MER58B DNA MER1_type 0 341 189 191 319 17 25 chr6 36447012 36447131 -145968111 + L2 LINE L2 2036 2153 -1161 954 172 17 17 chr6 36447131 36447305 -145967937 - MER58B DNA MER1_type -161 180 7 2119 111 7 33 chr6 36447982 36448288 -145966954 + AluSg SINE Alu 1 298 -12 617 279 92 32 chr6 36448412 36448813 -145966429 + L2 LINE L2 1894 2318 -996 248 67 0 0 chr6 36448850 36448880 -145966362 - U6 snRNA snRNA -2 105 76 33 43 0 0 chr6 36448997 36449044 -145966198 + AT_rich Low_complexity Low_complexity 1 47 0 257 176 24 94 chr6 36449053 36449138 -145966104 - LTR67 LTR ERVL -21 536 458 25 0 0 0 chr6 36449611 36449636 -145965606 + AT_rich Low_complexity Low_complexity 1 25 0 358 269 75 50 chr6 36449672 36449954 -145965288 - L1MC5 LINE L1 -36 7925 7637 246 334 116 36 chr6 36450172 36450561 -145964681 + L2 LINE L2 2327 2746 -568 208 300 89 11 chr6 36450614 36450704 -145964538 + L2 LINE L2 2986 3082 -190 1973 131 0 45 chr6 36451014 36451326 -145963916 - AluSc SINE Alu -11 298 1 311 218 39 13 chr6 36451565 36451643 -145963599 - MIR SINE MIR -77 185 106 232 230 230 37 chr6 36451641 36451776 -145963466 - L2 LINE L2 -1 3312 3152 * 6789 132 24 17 chr6 36451805 36453838 -145961404 + L1MA4 LINE L1 4256 6300 0 925 194 112 40 chr6 36453844 36454122 -145961120 + Charlie4a DNA MER1_type 32 329 -179 1157 107 143 36 chr6 36454212 36454436 -145960806 - MER44D DNA MER2_type -91 518 1 520 184 29 10 chr6 36454455 36454558 -145960684 + Charlie4a DNA MER1_type 404 508 0 695 221 82 24 chr6 36454891 36454960 -145960282 + MIR SINE MIR 33 97 -165 1536 206 61 16 chr6 36454960 36455132 -145960110 + MSTD LTR MaLR 1 164 -232 2351 78 0 0 chr6 36455132 36455441 -145959801 + AluY SINE Alu 1 309 0 1536 206 61 16 chr6 36455441 36455645 -145959597 + MSTD LTR MaLR 164 395 -1 695 221 82 24 chr6 36455645 36455783 -145959459 + MIR SINE MIR 97 252 -10 329 331 116 72 chr6 36456254 36456659 -145958583 - L2 LINE L2 -25 3247 2825 792 138 74 95 chr6 36456812 36456843 -145958399 + MER3 DNA MER1_type 1 31 -178 2190 103 10 0 chr6 36456843 36457135 -145958107 + AluSg SINE Alu 1 295 -15 792 138 74 95 chr6 36457135 36457292 -145957950 + MER3 DNA MER1_type 31 185 -24 506 311 54 31 chr6 36457698 36458049 -145957193 - L2 LINE L2 -1210 2104 1746 204 167 28 0 chr6 36461430 36461476 -145953766 + G-rich Low_complexity Low_complexity 5 32 0 23 0 0 0 chr6 36465780 36465803 -145949439 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr6 36465856 36465883 -145949359 + (TG)n Simple_repeat Simple_repeat 1 27 0 255 133 0 0 chr6 36468473 36468518 -145946724 + (GGA)n Simple_repeat Simple_repeat 2 46 0 458 242 75 38 chr6 36469043 36469078 -145946164 - MER58A DNA MER1_type -2219 201 169 1657 141 93 13 chr6 36469078 36469390 -145945852 - MER1B DNA MER1_type 0 337 1 458 242 75 38 chr6 36469390 36469540 -145945702 - MER58A DNA MER1_type -2251 169 9 2000 97 53 81 chr6 36469625 36469946 -145945296 - AluSx SINE Alu 0 312 1 577 196 122 20 chr6 36470004 36470152 -145945090 + Tigger1 DNA MER2_type 1 163 -2255 1832 57 102 0 chr6 36472314 36472560 -145942682 + AluY SINE Alu 21 291 -20 938 242 35 27 chr6 36474820 36475076 -145940166 - MIR SINE MIR -2 260 3 969 174 12 0 chr6 36475791 36475952 -145939290 - FRAM SINE Alu -13 163 1 1627 102 91 4 chr6 36476181 36476445 -145938797 - THE1C LTR MaLR 0 375 89 1937 126 72 13 chr6 36476570 36476888 -145938354 - MER1B DNA MER1_type 0 337 1 430 200 142 0 chr6 36476896 36477016 -145938226 - MIR SINE MIR -6 256 120 1903 138 0 21 chr6 36477904 36478194 -145937048 - AluSx SINE Alu -24 288 5 316 308 107 18 chr6 36479043 36479212 -145936030 - MIR SINE MIR -6 256 73 261 146 0 0 chr6 36479373 36479421 -145935821 + (CA)n Simple_repeat Simple_repeat 2 49 0 2159 109 0 0 chr6 36479443 36479757 -145935485 - AluSx SINE Alu 0 314 1 9416 159 21 28 chr6 36479762 36480011 -145935231 - L1MA4A LINE L1 -1 6302 6053 2644 120 15 5 chr6 36480011 36480410 -145934832 + MER57A LTR ERV1 1 403 0 9416 159 21 28 chr6 36480410 36480890 -145934352 - L1MA4A LINE L1 -250 6053 5571 2258 60 71 0 chr6 36480890 36481173 -145934069 + AluSp SINE Alu 1 303 -10 9416 159 21 28 chr6 36481173 36481650 -145933592 - L1MA4A LINE L1 -732 5571 5093 2237 120 3 3 chr6 36481650 36481959 -145933283 - AluSg SINE Alu -1 309 1 9416 159 21 28 chr6 36481959 36482874 -145932368 - L1MA4A LINE L1 -1210 5093 4059 1940 136 0 41 chr6 36482874 36483190 -145932052 - AluSx SINE Alu -9 303 1 9416 159 21 28 chr6 36483190 36483865 -145931377 - L1MA4A LINE L1 -2244 4059 3381 709 200 36 0 chr6 36483865 36484030 -145931212 - L1MA4A LINE L1 -2687 3459 3289 2784 35 0 0 chr6 36484511 36484821 -145930421 - AluY SINE Alu -1 310 1 200 271 0 0 chr6 36484916 36484986 -145930256 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 27 0 8 0 chr6 36485248 36485316 -145929926 + AT_rich Low_complexity Low_complexity 1 27 0 2391 84 3 0 chr6 36485323 36485620 -145929622 + AluSq SINE Alu 1 298 -15 252 0 0 0 chr6 36485714 36485742 -145929500 + (CA)n Simple_repeat Simple_repeat 2 29 0 259 33 0 0 chr6 36485808 36485838 -145929404 + MSTD LTR MaLR 1 30 -366 1158 193 93 135 chr6 36486068 36486476 -145928766 + MSTD LTR MaLR 37 428 0 510 274 93 35 chr6 36486477 36487341 -145927901 - L1MC5 LINE L1 -99 7862 7102 1269 268 39 8 chr6 36487490 36487852 -145927390 - L1MC4 LINE L1 -974 7068 6696 24 32 0 0 chr6 36487888 36487919 -145927323 + AT_rich Low_complexity Low_complexity 1 31 0 2113 126 0 10 chr6 36487958 36488267 -145926975 - AluSg SINE Alu -4 306 1 917 181 0 92 chr6 36488432 36488689 -145926553 + AluJo SINE Alu 86 312 0 534 224 75 119 chr6 36488872 36488958 -145926284 - L1MC4a LINE L1 -1758 6050 5962 1794 183 3 0 chr6 36488958 36489243 -145925999 - AluJo SINE Alu -26 286 1 534 224 75 119 chr6 36489243 36489400 -145925842 - L1MC4a LINE L1 -1846 5962 5826 1346 102 62 33 chr6 36489400 36489583 -145925659 - L1MA4A LINE L1 0 6303 6110 464 0 0 18 chr6 36489583 36489640 -145925602 + (TA)n Simple_repeat Simple_repeat 2 57 0 1346 102 62 33 chr6 36489640 36489700 -145925542 - L1MA4A LINE L1 -193 6110 6053 534 224 75 119 chr6 36489700 36489816 -145925426 - L1MC4a LINE L1 -1982 5826 5706 2076 101 0 0 chr6 36489865 36490132 -145925110 + AluSg SINE Alu 35 301 -9 193 293 0 0 chr6 36490307 36490365 -145924877 + MIR SINE MIR 190 247 -15 190 347 76 21 chr6 36491101 36491245 -145923997 - L2 LINE L2 -422 2892 2741 418 308 138 0 chr6 36491475 36491670 -145923572 + MIR SINE MIR 3 224 -38 378 289 71 36 chr6 36492555 36492808 -145922434 - L2 LINE L2 -86 3186 2925 2370 109 0 0 chr6 36492884 36493196 -145922046 + AluSx SINE Alu 1 312 0 2625 266 77 26 chr6 36493276 36494309 -145920933 + HAL1 LINE L1 1422 2507 0 260 225 21 199 chr6 36495714 36495755 -145919487 - MER5A DNA MER1_type -22 167 120 2051 127 3 0 chr6 36495755 36496039 -145919203 + AluSc SINE Alu 1 285 -24 260 225 21 199 chr6 36496039 36496118 -145919124 - MER5A DNA MER1_type -69 120 89 1792 147 0 11 chr6 36496118 36496423 -145918819 - AluJo SINE Alu 0 302 1 260 225 21 199 chr6 36496423 36496491 -145918751 - MER5A DNA MER1_type -100 89 11 198 245 19 19 chr6 36499323 36499376 -145915866 + MIR SINE MIR 21 73 -135 26 30 0 0 chr6 36500590 36500623 -145914619 + AT_rich Low_complexity Low_complexity 1 33 0 331 143 127 0 chr6 36500779 36500842 -145914400 + LTR33 LTR ERVL 87 157 -364 203 0 0 36 chr6 36500865 36500893 -145914349 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 253 326 35 42 chr6 36500999 36501143 -145914099 + MER5A DNA MER1_type 19 161 -28 * 271 331 41 41 chr6 36501014 36501159 -145914083 - MER5A DNA MER1_type -25 164 20 239 309 49 0 chr6 36501305 36501386 -145913856 + L2 LINE L2 3228 3312 -1 991 163 0 6 chr6 36501811 36501977 -145913265 - FRAM SINE Alu -11 165 1 369 303 113 22 chr6 36501981 36502351 -145912891 - L1MEd LINE L1 -3587 2542 2139 375 277 76 66 chr6 36502355 36502760 -145912482 - MLT1J2 LTR MaLR -5 445 1 1648 118 36 69 chr6 36502828 36503161 -145912081 - AluSx SINE Alu 0 312 1 508 329 83 19 chr6 36503690 36504015 -145911227 - L1MEd LINE L1 -4906 1213 868 247 262 107 39 chr6 36504975 36505078 -145910164 - L2 LINE L2 0 3272 3163 948 180 148 7 chr6 36505078 36505362 -145909880 + MER33 DNA MER1_type 1 324 0 316 354 130 14 chr6 36507761 36507984 -145907258 - L2 LINE L2 -188 3084 2836 507 304 168 46 chr6 36508176 36508938 -145906304 + L2 LINE L2 1288 2142 -1172 1064 183 19 33 chr6 36511806 36512019 -145903223 + MER20 DNA MER1_type 10 219 0 1717 137 82 63 chr6 36512094 36512474 -145902768 + MLT1B LTR MaLR 1 387 -3 3033 230 162 29 chr6 36512841 36513797 -145901445 + MLT-int LTR MaLR 514 1596 -139 * 3766 191 35 29 chr6 36513792 36514628 -145900614 - L1MB2 LINE L1 -35 6136 5296 * 8681 144 36 28 chr6 36514622 36517162 -145898080 - L1MA8 LINE L1 -4 6287 3726 1914 201 37 33 chr6 36517162 36517649 -145897593 - L1MB2 LINE L1 -835 5311 4823 185 94 31 0 chr6 36517795 36517827 -145897415 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 279 0 0 0 chr6 36518108 36518139 -145897103 + (TA)n Simple_repeat Simple_repeat 1 31 0 2521 40 40 0 chr6 36518142 36518441 -145896801 - AluY SINE Alu 0 311 1 544 165 28 28 chr6 36519524 36519700 -145895542 + CT-rich Low_complexity Low_complexity 2 177 0 183 354 105 6 chr6 36520493 36520674 -145894568 + L2 LINE L2 2076 2274 -1040 183 42 0 0 chr6 36520858 36520882 -145894360 + (GA)n Simple_repeat Simple_repeat 1 24 0 201 374 43 12 chr6 36521242 36521405 -145893837 + MIR SINE MIR 19 186 -76 290 276 20 20 chr6 36521426 36521524 -145893718 - LTR67 LTR ERVL 0 557 460 641 250 26 7 chr6 36521536 36521688 -145893554 - L1MC4 LINE L1 -573 7469 7315 312 224 82 0 chr6 36521704 36521790 -145893452 - L1MC4 LINE L1 -493 7502 7315 * 1706 261 40 84 chr6 36521786 36522724 -145892518 - L1MB2 LINE L1 -2290 3856 2973 1779 180 3 13 chr6 36522724 36523035 -145892207 - AluJo SINE Alu 0 312 5 1706 261 40 84 chr6 36523035 36523217 -145892025 - L1MB2 LINE L1 -3173 2973 2785 708 240 38 83 chr6 36523248 36523288 -145891954 - L1M4c LINE L1 -2702 3942 3902 628 151 43 86 chr6 36523288 36523427 -145891815 - FLAM_A SINE Alu 0 133 1 708 240 38 83 chr6 36523427 36523731 -145891511 - L1M4c LINE L1 -2742 3902 3586 213 39 0 0 chr6 36523731 36523757 -145891485 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 708 240 38 83 chr6 36523757 36523789 -145891453 - L1M4c LINE L1 -3058 3586 3554 2017 128 3 0 chr6 36523789 36524077 -145891165 - AluSx SINE Alu -23 289 1 708 240 38 83 chr6 36524077 36524169 -145891073 - L1M4c LINE L1 -3090 3554 3493 * 3979 223 56 63 chr6 36524165 36525226 -145890016 - L1M4c LINE L1 -3873 2952 1885 559 179 0 0 chr6 36525226 36525310 -145889932 - AluJ/FLAM SINE Alu -227 85 2 3979 223 56 63 chr6 36525310 36526318 -145888924 - L1M4c LINE L1 -4940 1885 790 1192 200 55 48 chr6 36526321 36526715 -145888527 - MSTB2 LTR MaLR -8 445 1 3570 241 27 8 chr6 36526715 36527492 -145887750 - L1M4c LINE L1 -5747 795 4 278 209 36 36 chr6 36527488 36527598 -145887644 - L1MDb LINE L1 -5170 1239 1130 * 1809 157 6 29 chr6 36528062 36528374 -145886868 - AluJo SINE Alu -7 305 1 636 254 0 0 chr6 36528784 36528926 -145886316 - MER69 DNA AcHobo -540 1986 1845 1002 244 156 10 chr6 36529314 36529622 -145885620 - MER69 DNA AcHobo -2173 353 1 5585 135 18 79 chr6 36529931 36530797 -145884445 - L1MA4A LINE L1 -8 6295 5378 729 195 8 0 chr6 36530797 36530925 -145884317 - FLAM_C SINE Alu 0 133 5 5585 135 18 79 chr6 36530925 36531127 -145884115 - L1MA4A LINE L1 -925 5378 5165 215 30 0 30 chr6 36531127 36531160 -145884082 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1229 179 61 32 chr6 36531160 36531439 -145883803 - AluJo SINE Alu -25 287 1 5585 135 18 79 chr6 36531439 36531951 -145883291 - L1MA4A LINE L1 -1136 5167 4802 2716 115 0 3 chr6 36531966 36532339 -145882903 - L1PB1 LINE L1 -4 6863 6492 537 19 10 146 chr6 36532362 36532567 -145882675 + (TA)n Simple_repeat Simple_repeat 2 178 0 5620 179 13 5 chr6 36532567 36534234 -145881008 - L1PB1 LINE L1 -360 6507 4830 7195 22 0 0 chr6 36534285 36535093 -145880149 - L1PA3 LINE L1 -2 6153 5346 6587 205 7 31 chr6 36535088 36536256 -145878986 - L1PB1 LINE L1 -2037 4825 3700 * 2398 91 13 0 chr6 36536256 36536564 -145878678 - AluSq SINE Alu -1 312 1 6587 205 7 31 chr6 36536564 36536920 -145878322 - L1PB1 LINE L1 -3162 3700 3337 2303 121 25 27 chr6 36536920 36537285 -145877957 + THE1B LTR MaLR 1 364 0 4282 69 42 0 chr6 36537285 36537837 -145877405 + THE1B-int LTR MaLR 1 575 -1005 1394 229 22 11 chr6 36537823 36538194 -145877048 - L1PB1 LINE L1 -6483 380 6 * 7295 185 28 21 chr6 36538209 36539774 -145875468 - L1MA4A LINE L1 -1329 4817 3242 2064 161 108 50 chr6 36539774 36540239 -145875003 + LTR22B LTR ERVK 1 492 0 42441 85 3 5 chr6 36540241 36547063 -145868179 + HERVK22 LTR ERVK 3 6808 -29 1055 58 29 0 chr6 36547060 36547197 -145868045 - HERVK22 LTR ERVK -2471 4366 4226 * 342 374 50 23 chr6 36548707 36549009 -145866233 - L3 LINE CR1 -351 1226 917 265 328 39 8 chr6 36549108 36549236 -145866006 + L2 LINE L2 2078 2209 -1105 7324 54 8 43 chr6 36549491 36551167 -145864075 - SVA Other Other -756 1386 2 3791 239 83 63 chr6 36551695 36552368 -145862874 - L1MEc LINE L1 -2115 4100 3442 915 163 121 131 chr6 36552368 36552773 -145862469 - MER57A LTR ERV1 0 403 3 3791 239 83 63 chr6 36552773 36553834 -145861408 - L1MEc LINE L1 -2773 3442 2337 2782 87 20 3 chr6 36553834 36554224 -145861018 - L1PA8 LINE L1 -4 6168 5772 3791 239 83 63 chr6 36554224 36554798 -145860444 - L1MEc LINE L1 -3878 2337 1776 273 81 0 0 chr6 36556053 36556090 -145859152 - MSTB LTR MaLR -389 37 1 710 191 46 7 chr6 36556306 36556458 -145858784 - MER96B DNA MER1_type? -258 159 2 456 311 88 58 chr6 36556574 36557583 -145857659 + L1MC/D LINE L1 4723 5777 -540 2177 179 42 0 chr6 36557583 36557991 -145857251 + MSTB1 LTR MaLR 4 428 -4 456 311 88 58 chr6 36557991 36558020 -145857222 + L1MC/D LINE L1 5777 5804 -513 685 212 68 56 chr6 36558646 36558896 -145856346 + MIR SINE MIR 6 258 -4 678 191 141 48 chr6 36560572 36560783 -145854459 - MIR SINE MIR 0 262 34 708 128 0 0 chr6 36561093 36561202 -145854040 - L1PA13 LINE L1 -7 6156 6048 277 316 32 39 chr6 36561405 36561560 -145853682 - L3 LINE CR1 -2 1575 1422 202 358 80 18 chr6 36561921 36562147 -145853095 - L2 LINE L2 -1 3271 3032 181 394 22 15 chr6 36562521 36562658 -145852584 - L2 LINE L2 -1321 1993 1856 251 281 22 34 chr6 36563495 36563584 -145851658 + MIR SINE MIR 45 132 -76 395 345 53 8 chr6 36565021 36565267 -145849975 - MIR SINE MIR -4 258 2 228 270 34 11 chr6 36565609 36565698 -145849544 - MIR SINE MIR -64 198 108 4871 38 2 7 chr6 36567310 36567895 -145847347 - L1PA5 LINE L1 -1 6153 5572 1177 15 0 0 chr6 36567895 36568026 -145847216 + L1PA5 LINE L1 5439 5569 -586 1858 164 6 6 chr6 36573848 36574159 -145841083 - AluJb SINE Alu -1 311 1 1669 144 7 50 chr6 36574893 36575191 -145840051 + AluSq SINE Alu 1 285 -28 192 40 0 0 chr6 36575194 36575219 -145840023 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 456 19 0 0 chr6 36575240 36575293 -145839949 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 596 278 155 28 chr6 36579720 36580004 -145835238 - MLT1I LTR MaLR -5 404 85 266 242 0 15 chr6 36580074 36580140 -145835102 - L2 LINE L2 -11 3302 3238 355 309 77 48 chr6 36580414 36580686 -145834556 + L1MEd LINE L1 938 1217 -4902 432 289 144 34 chr6 36580790 36581351 -145833891 + L1MEd LINE L1 3071 3693 -2436 226 326 37 7 chr6 36581360 36581495 -145833747 + L1MEd LINE L1 3738 3876 -2253 246 281 92 13 chr6 36581608 36581761 -145833481 + L1P LINE L1 4059 4223 -1923 538 246 138 13 chr6 36581765 36581989 -145833253 + MIR SINE MIR 11 262 0 200 288 0 0 chr6 36583629 36583688 -145831554 + A-rich Low_complexity Low_complexity 2 60 0 284 200 339 0 chr6 36583776 36583906 -145831336 - MIR SINE MIR -10 252 79 221 357 127 25 chr6 36585142 36586043 -145829199 - L2 LINE L2 -511 2803 1812 729 205 0 0 chr6 36586053 36586180 -145829062 + FLAM_C SINE Alu 1 127 -6 11443 175 133 9 chr6 36586447 36586688 -145828554 + L1PB1 LINE L1 94 304 -6558 2366 77 0 3 chr6 36586688 36586986 -145828256 + AluY SINE Alu 2 298 -13 11443 175 133 9 chr6 36586986 36591262 -145823980 + L1PB1 LINE L1 304 5155 -1707 4544 153 45 30 chr6 36591268 36592229 -145823013 - MER11C LTR ERVK -4 1067 1 4183 169 26 1 chr6 36592229 36593549 -145821693 + L1PB1 LINE L1 5151 6507 -360 271 89 0 63 chr6 36593553 36593632 -145821610 + (TA)n Simple_repeat Simple_repeat 2 75 0 2430 123 16 0 chr6 36593632 36593997 -145821245 + L1PB1 LINE L1 6492 6862 -5 232 322 9 26 chr6 36595614 36595729 -145819513 + (TGAG)n Simple_repeat Simple_repeat 1 113 0 * 376 282 5 48 chr6 36595648 36595836 -145819406 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 345 333 13 7 chr6 36595911 36596061 -145819181 + (TGGG)n Simple_repeat Simple_repeat 1 151 0 327 271 199 12 chr6 36596596 36596762 -145818480 - MIR SINE MIR -1 261 65 639 186 97 7 chr6 36598321 36598466 -145816776 + MER96B DNA MER1_type? 257 414 -3 246 357 97 20 chr6 36598663 36598859 -145816383 - L2 LINE L2 -30 3242 3032 180 394 43 21 chr6 36598908 36599187 -145816055 - L2 LINE L2 -352 2962 2678 1267 151 72 0 chr6 36599440 36599691 -145815551 - L1MA8 LINE L1 -6 6285 6017 228 33 0 0 chr6 36599718 36599748 -145815494 - L1MA8 LINE L1 -263 6028 5999 215 356 182 18 chr6 36599766 36600255 -145814987 - L2 LINE L2 -898 2416 1848 5829 140 37 1 chr6 36600368 36601707 -145813535 - L1PB1 LINE L1 -14 6137 4750 358 344 78 0 chr6 36605044 36605236 -145810006 - MIR SINE MIR -6 256 50 2201 105 10 0 chr6 36606310 36606604 -145808638 + AluSg SINE Alu 1 297 -13 248 130 22 0 chr6 36606641 36606687 -145808555 + GA-rich Low_complexity Low_complexity 2 48 0 1654 227 39 81 chr6 36608095 36608734 -145806508 - LTR9 LTR ERV1 0 612 1 1530 148 6 11 chr6 36608734 36609005 -145806237 - HUERS-P3 LTR ERV1 0 8919 7176 710 128 111 39 chr6 36609288 36609468 -145805774 - HUERS-P3 LTR ERV1 -2439 2576 2384 486 179 0 36 chr6 36609472 36609584 -145805658 - HUERS-P3 LTR ERV1 -1947 6972 6865 4162 204 27 1 chr6 36609584 36610316 -145804926 - HUERS-P3 LTR ERV1 -2007 6912 6162 4160 127 66 8 chr6 36610302 36610941 -145804301 - HUERS-P3 LTR ERV1 -3343 5576 4901 * 1018 127 7 0 chr6 36610943 36611085 -145804157 - HUERS-P3 LTR ERV1 -4238 4681 4539 * 8396 162 16 14 chr6 36611078 36612294 -145802948 - HUERS-P3 LTR ERV1 -5313 2105 1759 4645 178 15 43 chr6 36612294 36613291 -145801951 - LTR5 LTR ERVK 0 969 1 8396 162 16 14 chr6 36613291 36614304 -145800938 - HUERS-P3 LTR ERV1 -5659 1759 750 1476 174 7 66 chr6 36614313 36614618 -145800624 - HUERS-P3 LTR ERV1 -6876 542 256 309 207 17 0 chr6 36614623 36614681 -145800561 - HUERS-P3 LTR ERV1 -7322 96 38 1459 218 58 93 chr6 36614726 36615360 -145799882 - LTR9 LTR ERV1 0 612 1 278 279 90 27 chr6 36615781 36615959 -145799283 - MER5A DNA MER1_type 0 189 1 2981 9 0 0 chr6 36616004 36616322 -145798920 + AluYb8 SINE Alu 1 318 0 232 333 100 52 chr6 36617423 36617654 -145797588 + L3 LINE CR1 330 571 -1006 2214 86 69 0 chr6 36617781 36618072 -145797170 - AluSp SINE Alu -2 311 1 1307 86 0 0 chr6 36622069 36622232 -145793010 + AluY SINE Alu 131 293 -18 2031 105 25 68 chr6 36622252 36622577 -145792665 + AluSx SINE Alu 1 311 -1 2442 119 42 0 chr6 36622577 36622956 -145792286 - MER57A LTR ERV1 -8 395 1 1519 101 101 8 chr6 36622956 36623113 -145792129 - MER57A-int LTR ERV1 0 7537 7349 203 0 0 36 chr6 36623113 36623141 -145792101 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1519 101 101 8 chr6 36623141 36623220 -145792022 - MER57A-int LTR ERV1 -188 7349 7279 675 93 22 93 chr6 36623220 36623359 -145791883 - LTR54B LTR ERV1 -367 131 3 14246 87 21 4 chr6 36623359 36625255 -145789987 - MER57A-int LTR ERV1 -391 7146 5219 990 53 0 0 chr6 36625255 36625369 -145789873 + AluY SINE Alu 183 296 -15 1412 105 0 0 chr6 36625369 36625559 -145789683 - MER57A-int LTR ERV1 -2312 5225 5036 321 26 0 0 chr6 36625559 36625597 -145789645 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 1331 160 5 0 chr6 36625611 36625823 -145789419 - AluSg/x SINE Alu -9 301 89 12356 124 21 36 chr6 36625840 36626198 -145789044 - MER57A-int LTR ERV1 -3651 2295 1933 2051 135 0 0 chr6 36626198 36626486 -145788756 - AluSx SINE Alu -24 288 1 12356 124 21 36 chr6 36626486 36627285 -145787957 - MER57A-int LTR ERV1 -4013 1933 1123 2629 40 7 0 chr6 36627285 36627587 -145787655 - AluY SINE Alu -7 304 1 12356 124 21 36 chr6 36627587 36628113 -145787129 - MER57A-int LTR ERV1 -4823 1123 591 2442 75 0 25 chr6 36628113 36628432 -145786810 + AluY SINE Alu 1 311 0 12356 124 21 36 chr6 36628432 36628550 -145786692 - MER57A-int LTR ERV1 -5355 591 522 2316 95 3 0 chr6 36628550 36628844 -145786398 + AluSx SINE Alu 1 295 -17 12356 124 21 36 chr6 36628844 36629004 -145786238 - MER57A-int LTR ERV1 -5424 522 361 4955 144 12 32 chr6 36628997 36629233 -145786009 - MER57A-int LTR ERV1 -6731 806 567 * 1868 149 14 17 chr6 36629233 36629522 -145785720 - AluSx SINE Alu -22 290 3 4955 144 12 32 chr6 36629522 36630107 -145785135 - MER57A-int LTR ERV1 -6970 567 1 2512 148 10 0 chr6 36630107 36630506 -145784736 - MER57A LTR ERV1 0 403 1 256 200 67 0 chr6 36630513 36630573 -145784669 - MIR SINE MIR -64 144 81 314 314 146 35 chr6 36631875 36632765 -145782477 - L2 LINE L2 -511 2803 1815 1447 211 22 4 chr6 36632778 36632904 -145782338 + AluJo SINE Alu 1 123 -189 279 0 0 0 chr6 36632904 36632935 -145782307 + (TA)n Simple_repeat Simple_repeat 1 31 0 1447 211 22 4 chr6 36632935 36633083 -145782159 + AluJo SINE Alu 123 280 -32 208 0 37 0 chr6 36633083 36633110 -145782132 + (GA)n Simple_repeat Simple_repeat 1 28 0 276 185 0 0 chr6 36633111 36633165 -145782077 + GA-rich Low_complexity Low_complexity 2 55 0 260 250 227 0 chr6 36633313 36633441 -145781801 + MIR SINE MIR 106 262 0 35 24 0 0 chr6 36634199 36634241 -145781001 + AT_rich Low_complexity Low_complexity 1 42 0 2451 92 0 0 chr6 36634301 36634606 -145780636 + AluSq SINE Alu 1 305 -8 342 0 0 0 chr6 36634675 36634713 -145780529 + (TG)n Simple_repeat Simple_repeat 1 38 0 204 40 0 0 chr6 36634713 36634738 -145780504 + (GA)n Simple_repeat Simple_repeat 2 26 0 718 221 6 31 chr6 36634739 36634902 -145780340 - AluJb SINE Alu -31 281 123 1593 175 95 0 chr6 36635390 36635664 -145779578 - AluSx SINE Alu -12 300 1 2400 85 0 26 chr6 36635970 36636276 -145778966 + AluSq SINE Alu 1 298 -15 1441 220 26 0 chr6 36636494 36636799 -145778443 - MER68 LTR ERV1 0 562 250 1919 171 25 53 chr6 36636833 36637226 -145778016 - MLT2B3 LTR ERVL -6 548 167 559 136 0 0 chr6 36637227 36637308 -145777934 + AluSg/x SINE Alu 219 299 -11 25 31 0 0 chr6 36637390 36637422 -145777820 + AT_rich Low_complexity Low_complexity 1 32 0 1389 171 104 4 chr6 36637670 36637939 -145777303 + AluJb SINE Alu 1 296 -16 228 213 12 12 chr6 36638950 36638961 -145776281 + Charlie2 DNA MER1_type 2413 2423 -439 1426 134 46 8 chr6 36638961 36639171 -145776071 + L1MA8 LINE L1 6017 6240 -51 252 0 0 0 chr6 36639171 36639199 -145776043 + (TA)n Simple_repeat Simple_repeat 1 28 0 1426 134 46 8 chr6 36639199 36639249 -145775993 + L1MA8 LINE L1 6240 6287 -4 228 213 12 12 chr6 36639249 36639317 -145775925 + Charlie2 DNA MER1_type 2422 2492 -370 563 212 66 33 chr6 36639441 36639592 -145775650 + MER3 DNA MER1_type 1 156 -53 587 162 103 22 chr6 36640927 36641084 -145774158 + L1ME1 LINE L1 5997 6161 -5 2209 110 7 0 chr6 36641090 36641419 -145773823 - AluSx SINE Alu 0 331 1 1014 161 36 21 chr6 36641708 36641900 -145773342 - MER3 DNA MER1_type 0 209 15 1088 115 0 14 chr6 36642052 36642200 -145773042 + AluSx SINE Alu 1 146 -166 4720 69 26 9 chr6 36642200 36643304 -145771938 - MER11A LTR ERVK 0 1266 3 1118 122 0 0 chr6 36643304 36643452 -145771790 + AluSx SINE Alu 139 286 -26 186 71 0 0 chr6 36643452 36643480 -145771762 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2054 93 4 7 chr6 36643757 36644026 -145771216 + AluSx SINE Alu 45 312 0 1047 212 97 26 chr6 36644028 36644297 -145770945 + MLT1J LTR MaLR 217 504 -7 352 284 81 7 chr6 36644972 36645120 -145770122 + MLT1L LTR MaLR 424 582 -33 2473 84 10 0 chr6 36645225 36645535 -145769707 - AluSp SINE Alu 0 313 1 2233 131 0 3 chr6 36645555 36645868 -145769374 - AluSx SINE Alu 0 312 1 383 239 39 71 chr6 36645901 36646056 -145769186 + MER5B DNA MER1_type 1 150 -28 313 210 76 34 chr6 36646117 36646236 -145769006 - Charlie1 DNA MER1_type -47 2714 2591 1925 142 7 10 chr6 36646238 36646534 -145768708 + AluJb SINE Alu 1 295 -17 1299 119 10 15 chr6 36646344 36646545 -145768697 + AluSg/x SINE Alu 105 304 -6 313 177 200 39 chr6 36646649 36646671 -145768571 + L1MC5 LINE L1 7550 7567 -394 243 0 0 0 chr6 36646671 36646698 -145768544 + (CA)n Simple_repeat Simple_repeat 2 28 0 313 177 200 39 chr6 36646698 36646803 -145768439 + L1MC5 LINE L1 7567 7699 -262 942 179 196 0 chr6 36646837 36647066 -145768176 - ORSL DNA AcHobo -1 274 1 214 133 111 0 chr6 36647923 36647968 -145767274 - MIR SINE MIR -111 151 102 2360 67 0 0 chr6 36648656 36648953 -145766289 + AluY SINE Alu 1 297 -14 1704 164 0 7 chr6 36648960 36649247 -145765995 + AluJb SINE Alu 26 310 -2 204 40 0 0 chr6 36649759 36649784 -145765458 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1183 142 0 44 chr6 36649784 36649961 -145765281 - AluJo SINE Alu -32 280 112 1708 162 47 3 chr6 36649961 36650258 -145764984 + AluJb SINE Alu 1 310 -2 1183 142 0 44 chr6 36650258 36650284 -145764958 - AluJo SINE Alu -200 112 86 2094 97 3 3 chr6 36650611 36650899 -145764343 + AluSc SINE Alu 8 295 -14 204 179 0 0 chr6 36658285 36658324 -145756918 + (CA)n Simple_repeat Simple_repeat 2 40 0 441 229 137 11 chr6 36664634 36664809 -145750433 + MIR3 SINE MIR 3 199 -9 410 271 234 16 chr6 36665394 36665582 -145749660 + MIR SINE MIR 13 241 -21 2242 105 0 34 chr6 36671819 36672142 -145743100 - AluSx SINE Alu 0 312 1 2108 121 3 0 chr6 36672349 36672646 -145742596 + AluSq SINE Alu 1 298 -15 2112 119 3 0 chr6 36672786 36673081 -145742161 + AluSx SINE Alu 1 296 -16 232 347 0 28 chr6 36676161 36676337 -145738905 + G-rich Low_complexity Low_complexity 4 174 0 261 0 0 0 chr6 36676451 36676480 -145738762 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 276 270 93 59 chr6 36677313 36677518 -145737724 - MIR SINE MIR -51 211 17 306 296 22 9 chr6 36677841 36678076 -145737166 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 422 282 11 22 chr6 36678096 36678277 -145736965 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 313 333 15 7 chr6 36678346 36678481 -145736761 + (TGGG)n Simple_repeat Simple_repeat 1 136 0 402 238 238 0 chr6 36678993 36679144 -145736098 - MIR SINE MIR 0 262 76 263 246 7 0 chr6 36680164 36680306 -145734936 + CT-rich Low_complexity Low_complexity 2 144 0 218 319 18 35 chr6 36681532 36681645 -145733597 - L3b LINE CR1 -150 1433 1323 210 94 19 38 chr6 36682849 36682902 -145732340 + (CCCCCG)n Simple_repeat Simple_repeat 4 55 0 24 0 0 0 chr6 36687259 36687283 -145727959 + AT_rich Low_complexity Low_complexity 1 24 0 273 326 132 16 chr6 36687283 36687473 -145727769 - MIR SINE MIR -31 231 20 399 304 82 32 chr6 36687491 36687649 -145727593 + MIR3 SINE MIR 16 181 -27 211 290 72 0 chr6 36688912 36688981 -145726261 + MER91C DNA MER1_type 25 98 -42 1387 98 0 0 chr6 36689108 36689291 -145725951 + AluSg/x SINE Alu 121 303 -9 708 78 0 0 chr6 36689957 36690047 -145725195 + HY4 scRNA scRNA 1 90 -3 21 0 0 0 chr6 36690428 36690449 -145724793 + GC_rich Low_complexity Low_complexity 1 21 0 197 62 0 31 chr6 36690666 36690698 -145724544 + (CCG)n Simple_repeat Simple_repeat 3 33 0 243 0 0 0 chr6 36696328 36696355 -145718887 + (GA)n Simple_repeat Simple_repeat 2 28 0 233 262 16 0 chr6 36697653 36697714 -145717528 + G-rich Low_complexity Low_complexity 5 66 0 262 242 10 30 chr6 36698968 36699067 -145716175 + G-rich Low_complexity Low_complexity 5 101 0 316 183 32 75 chr6 36699389 36699482 -145715760 - MIR SINE MIR -43 219 131 397 292 110 26 chr6 36699529 36699683 -145715559 - MER5A DNA MER1_type -16 173 7 1740 177 0 44 chr6 36700675 36700991 -145714251 + AluJb SINE Alu 1 302 -10 472 129 129 0 chr6 36701150 36701235 -145714007 - MER5A DNA MER1_type -86 103 8 590 262 47 29 chr6 36701245 36701417 -145713825 + MIR SINE MIR 84 258 -4 294 308 16 44 chr6 36702467 36702649 -145712593 + CT-rich Low_complexity Low_complexity 4 180 0 514 241 137 29 chr6 36704899 36705108 -145710134 + MIR SINE MIR 4 233 -29 998 169 33 0 chr6 36705108 36705291 -145709951 + MER5A DNA MER1_type 1 189 0 514 241 137 29 chr6 36705291 36705314 -145709928 + MIR SINE MIR 233 252 -10 218 169 42 28 chr6 36705831 36705902 -145709340 + CT-rich Low_complexity Low_complexity 1 72 0 22 35 0 0 chr6 36707031 36707060 -145708182 + AT_rich Low_complexity Low_complexity 1 29 0 1949 163 3 3 chr6 36707195 36707502 -145707740 + AluSx SINE Alu 1 307 -5 235 305 105 11 chr6 36707931 36708026 -145707216 - L2 LINE L2 -1 3312 3209 706 263 110 76 chr6 36708059 36708823 -145706419 + L2 LINE L2 2485 3272 0 1425 157 4 44 chr6 36709128 36709253 -145705989 + AluJo SINE Alu 1 130 -182 3251 100 4 39 chr6 36709253 36709649 -145705593 - L1PA11 LINE L1 -6 6168 5760 2284 117 0 0 chr6 36709649 36709948 -145705294 - AluSg SINE Alu -10 300 2 2187 114 27 7 chr6 36709949 36710248 -145704994 - AluSg SINE Alu -5 305 1 3251 100 4 39 chr6 36710248 36710338 -145704904 - L1PA11 LINE L1 -413 5761 5697 1425 157 4 44 chr6 36710338 36710460 -145704782 + AluJo SINE Alu 130 238 -74 595 316 94 25 chr6 36710556 36710814 -145704428 + L1MC1 LINE L1 4080 4319 -1827 2374 95 0 0 chr6 36710814 36711120 -145704122 + AluY SINE Alu 1 306 -5 595 316 94 25 chr6 36711120 36711378 -145703864 + L1MC1 LINE L1 4319 4558 -1588 2341 91 0 7 chr6 36711378 36711674 -145703568 - AluSg SINE Alu -16 294 1 595 316 94 25 chr6 36711674 36711846 -145703396 + L1MC1 LINE L1 4558 4817 -1329 2104 122 153 42 chr6 36711865 36712041 -145703201 + MSTA LTR MaLR 1 156 -272 2084 143 3 7 chr6 36712041 36712341 -145702901 + AluJb SINE Alu 1 299 -13 2104 122 153 42 chr6 36712341 36712549 -145702693 + MSTA LTR MaLR 156 428 0 447 358 67 0 chr6 36712609 36712802 -145702440 + L1MC1 LINE L1 4910 5115 -1031 4844 152 59 85 chr6 36712805 36714014 -145701228 + L1MA8 LINE L1 3864 5103 -1188 1796 159 55 0 chr6 36714014 36714304 -145700938 + AluSx SINE Alu 1 306 -6 4844 152 59 85 chr6 36714304 36714346 -145700896 + L1MA8 LINE L1 5103 5145 -1146 1574 116 0 0 chr6 36714346 36714545 -145700697 + AluSc SINE Alu 1 199 -110 4844 152 59 85 chr6 36714545 36714584 -145700658 + L1MA8 LINE L1 5145 5183 -1108 437 125 0 0 chr6 36714584 36714648 -145700594 - AluSc SINE Alu -20 289 226 4844 152 59 85 chr6 36714648 36714844 -145700398 + L1MA8 LINE L1 5183 5383 -908 1853 182 0 7 chr6 36714844 36715140 -145700102 - AluJo SINE Alu -18 294 1 4844 152 59 85 chr6 36715140 36715777 -145699465 + L1MA8 LINE L1 5383 5940 -351 1157 152 0 16 chr6 36715780 36715964 -145699278 + FRAM SINE Alu 1 174 -2 938 93 27 87 chr6 36715973 36716156 -145699086 + L1MA8 LINE L1 5953 6124 -167 872 144 23 0 chr6 36716156 36716288 -145698954 + AluJo SINE Alu 1 135 -177 1916 167 7 3 chr6 36716288 36716594 -145698648 + AluJo SINE Alu 1 307 -5 403 201 98 55 chr6 36716594 36716758 -145698484 + L1MA8 LINE L1 6120 6290 -1 * 1053 272 66 21 chr6 36716755 36716835 -145698407 + L1MC1 LINE L1 5106 5181 -981 2446 83 0 3 chr6 36716835 36717137 -145698105 + AluY SINE Alu 1 301 -10 1053 272 66 21 chr6 36717137 36717796 -145697446 + L1MC1 LINE L1 5181 5817 -345 24 0 0 0 chr6 36717971 36717995 -145697247 + AT_rich Low_complexity Low_complexity 1 24 0 2328 95 14 0 chr6 36718232 36718528 -145696714 - AluSg SINE Alu -10 300 1 467 244 52 15 chr6 36718537 36718672 -145696570 + MIR SINE MIR 103 242 -20 214 162 0 0 chr6 36718680 36718717 -145696525 + (TTG)n Simple_repeat Simple_repeat 2 38 0 277 273 100 0 chr6 36718857 36718967 -145696275 - MER102b DNA MER1_type -13 328 208 1058 190 17 0 chr6 36719040 36719219 -145696023 - AluJb SINE Alu -6 306 125 288 186 0 0 chr6 36719219 36719278 -145695964 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 341 74 0 19 chr6 36719296 36719350 -145695892 - AluSq/x SINE Alu -164 138 86 1262 206 0 0 chr6 36719350 36719568 -145695674 - AluJo SINE Alu -92 220 3 229 133 20 166 chr6 36719569 36719662 -145695580 - Zaphod DNA AcHobo -3203 828 723 1844 174 3 0 chr6 36719662 36719950 -145695292 + AluJb SINE Alu 1 289 -23 229 133 20 166 chr6 36719950 36719982 -145695260 - Zaphod DNA AcHobo -3308 723 725 1937 183 25 30 chr6 36719982 36720137 -145695105 + MLT1A1 LTR MaLR 1 155 -210 2057 148 0 0 chr6 36720137 36720427 -145694815 + AluSx SINE Alu 1 290 -22 1937 183 25 30 chr6 36720427 36720638 -145694604 + MLT1A1 LTR MaLR 155 365 0 229 133 20 166 chr6 36720638 36720662 -145694580 - Zaphod DNA AcHobo -3305 726 700 283 261 15 0 chr6 36720662 36720727 -145694515 - MER2 DNA MER2_type 0 345 280 2158 107 7 3 chr6 36720748 36721037 -145694205 + AluY SINE Alu 3 292 -19 422 48 0 32 chr6 36721037 36721099 -145694143 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 908 202 93 0 chr6 36721112 36721305 -145693937 - MER2 DNA MER2_type -134 211 1 2347 222 81 31 chr6 36721305 36721399 -145693843 - Zaphod DNA AcHobo -3330 701 613 1097 66 20 7 chr6 36721399 36721550 -145693692 - L1PB1 LINE L1 -2 6149 5997 2347 222 81 31 chr6 36721550 36722123 -145693119 - Zaphod DNA AcHobo -3418 613 1 926 268 98 54 chr6 36722130 36722168 -145693074 - L2 LINE L2 -943 2371 2336 2368 95 0 3 chr6 36722168 36722472 -145692770 + AluSq SINE Alu 1 303 -10 926 268 98 54 chr6 36722472 36722971 -145692271 - L2 LINE L2 -978 2336 1810 369 245 48 88 chr6 36722980 36723127 -145692115 - L1MC4 LINE L1 0 8042 7902 1812 179 14 0 chr6 36723151 36723442 -145691800 - AluJo SINE Alu -12 300 6 2209 104 3 13 chr6 36723467 36723774 -145691468 - AluSp SINE Alu -9 304 1 307 251 70 55 chr6 36723822 36723949 -145691293 - L1MC4 LINE L1 -146 7896 7763 2289 118 0 0 chr6 36723949 36724255 -145690987 + AluSc SINE Alu 1 306 -3 307 251 70 55 chr6 36724255 36724326 -145690916 - L1MC4 LINE L1 -279 7763 7695 210 37 0 0 chr6 36724326 36724353 -145690889 + (TA)n Simple_repeat Simple_repeat 1 27 0 346 135 0 27 chr6 36724366 36724440 -145690802 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 1672 160 13 69 chr6 36724440 36724758 -145690484 - AluJb SINE Alu -12 300 1 1800 331 109 33 chr6 36724824 36726121 -145689121 - L2 LINE L2 -1849 1465 71 2185 110 7 10 chr6 36726138 36726446 -145688796 + AluSx SINE Alu 1 307 -5 1795 145 76 10 chr6 36726456 36726817 -145688425 + AluSg SINE Alu 1 380 0 702 233 71 57 chr6 36726823 36727008 -145688234 + MIR SINE MIR 20 201 -61 2590 105 57 38 chr6 36727008 36727349 -145687893 + MSTA LTR MaLR 1 334 -94 1852 148 28 24 chr6 36727349 36727640 -145687602 - AluJb SINE Alu -19 293 2 2378 100 0 0 chr6 36727647 36727947 -145687295 - AluSx SINE Alu -11 301 2 2590 105 57 38 chr6 36727947 36728017 -145687225 + MSTA LTR MaLR 339 428 0 702 233 71 57 chr6 36728017 36728041 -145687201 + MIR SINE MIR 201 232 -30 2276 117 0 0 chr6 36728708 36729006 -145686236 + AluSq SINE Alu 1 298 -15 1705 161 12 62 chr6 36729134 36729330 -145685912 - AluJb SINE Alu -5 307 132 2350 80 7 0 chr6 36729330 36729619 -145685623 + AluSg SINE Alu 1 291 -19 1705 161 12 62 chr6 36729619 36729745 -145685497 - AluJb SINE Alu -180 132 1 546 241 0 50 chr6 36730339 36730480 -145684762 + MLT1E3 LTR MaLR 55 188 -436 465 34 0 0 chr6 36731072 36731131 -145684111 + (TG)n Simple_repeat Simple_repeat 2 60 0 676 223 42 12 chr6 36731209 36731277 -145683965 - MER97a DNA MER1_type? -718 176 112 2351 102 0 0 chr6 36731277 36731580 -145683662 + AluSx SINE Alu 1 303 -9 676 223 42 12 chr6 36731580 36731677 -145683565 - MER97a DNA MER1_type? -782 112 6 2419 100 0 3 chr6 36731933 36732244 -145682998 + AluSx SINE Alu 1 310 -2 1001 195 53 11 chr6 36732313 36732706 -145682536 - Charlie4a DNA MER1_type -1 507 61 918 170 24 24 chr6 36732754 36732919 -145682323 + AluJb SINE Alu 138 302 -10 673 132 16 0 chr6 36732927 36733048 -145682194 + GA-rich Low_complexity Low_complexity 2 124 0 2118 117 3 0 chr6 36733058 36733465 -145681777 + AluSp SINE Alu 1 408 0 2075 133 16 7 chr6 36734198 36734507 -145680735 - AluJb SINE Alu 0 312 1 535 76 0 0 chr6 36734511 36734577 -145680665 - Alu SINE Alu -244 66 1 331 246 14 0 chr6 36734594 36734663 -145680579 + L1MCa LINE L1 1995 2064 -4362 2215 131 3 3 chr6 36734665 36734977 -145680265 - AluSq SINE Alu -1 312 1 1087 104 0 0 chr6 36734977 36735112 -145680130 - AluSq/x SINE Alu -178 135 1 207 0 0 0 chr6 36735117 36735140 -145680102 + (TA)n Simple_repeat Simple_repeat 1 23 0 2182 103 14 7 chr6 36735141 36735432 -145679810 - AluSp SINE Alu -20 293 1 1986 151 10 0 chr6 36735466 36735758 -145679484 + AluJb SINE Alu 1 295 -17 2081 125 0 31 chr6 36735763 36736082 -145679160 + AluSx SINE Alu 4 312 0 372 22 0 0 chr6 36736271 36736316 -145678926 + (CA)n Simple_repeat Simple_repeat 1 45 0 215 350 146 0 chr6 36737035 36737158 -145678084 + MIR SINE MIR 63 203 -59 * 312 294 101 0 chr6 36737148 36737257 -145677985 + L2 LINE L2 3192 3311 -2 1617 146 26 52 chr6 36737412 36737720 -145677522 - AluJo SINE Alu -12 300 1 1928 133 14 0 chr6 36737750 36738065 -145677177 - AluSx SINE Alu 0 312 1 2349 113 0 0 chr6 36741419 36741729 -145673513 + AluSg SINE Alu 1 310 0 687 252 185 42 chr6 36742437 36742664 -145672578 + L1MEd LINE L1 600 793 -5326 2511 89 0 0 chr6 36742664 36742967 -145672275 + AluSx SINE Alu 1 303 -9 687 252 185 42 chr6 36742967 36743172 -145672070 + L1MEd LINE L1 793 1094 -5025 1050 184 132 67 chr6 36743177 36743565 -145671677 + L1MC5 LINE L1 7190 7616 -345 2410 95 0 7 chr6 36743565 36743869 -145671373 + AluSq SINE Alu 1 302 -11 1050 184 132 67 chr6 36743869 36743957 -145671285 + L1MC5 LINE L1 7616 7697 -264 1016 164 7 0 chr6 36743967 36744119 -145671123 + FRAM SINE Alu 2 154 -22 259 245 21 98 chr6 36744175 36744318 -145670924 + L1MC5 LINE L1 7754 7885 -76 1074 125 12 12 chr6 36744472 36744661 -145670581 + AluSg/x SINE Alu 122 310 0 691 160 103 38 chr6 36744957 36745026 -145670216 + Charlie5 DNA MER1_type 2337 2400 -185 1875 138 24 17 chr6 36745026 36745322 -145669920 - AluJb SINE Alu -8 304 7 691 160 103 38 chr6 36745322 36745465 -145669777 + Charlie5 DNA MER1_type 2400 2563 -22 950 148 0 138 chr6 36745764 36745862 -145669380 - AluJo SINE Alu -120 192 139 2153 76 13 45 chr6 36745862 36746176 -145669066 + AluY SINE Alu 1 304 -7 950 148 0 138 chr6 36746176 36746294 -145668948 - AluJo SINE Alu -173 139 6 230 239 22 101 chr6 36746302 36746440 -145668802 + L1ME2 LINE L1 4061 4187 -1959 23 0 0 0 chr6 36746630 36746653 -145668589 + AT_rich Low_complexity Low_complexity 1 23 0 1297 129 31 0 chr6 36746657 36746851 -145668391 + AluJo SINE Alu 113 312 0 332 218 40 10 chr6 36746877 36746978 -145668264 + L1ME2 LINE L1 4515 4618 -1528 1791 106 0 4 chr6 36746993 36747228 -145668014 + AluSg/x SINE Alu 78 311 -1 389 228 57 0 chr6 36747228 36747351 -145667891 + L1ME2 LINE L1 4888 5017 -1129 1957 165 0 16 chr6 36747376 36747692 -145667550 - AluJb SINE Alu -1 311 1 2281 107 0 7 chr6 36747757 36748056 -145667186 - AluSc SINE Alu -12 297 1 1787 163 10 26 chr6 36748083 36748390 -145666852 + AluJb SINE Alu 1 302 -10 2213 114 7 0 chr6 36748463 36748761 -145666481 + AluSq SINE Alu 1 300 -13 286 133 147 40 chr6 36748761 36748836 -145666406 + FLAM SINE Alu 51 133 0 324 316 39 26 chr6 36748841 36748941 -145666301 + L1ME2 LINE L1 5204 5308 -838 1592 157 78 0 chr6 36748941 36749222 -145666020 - AluSx SINE Alu -9 303 1 324 316 39 26 chr6 36749222 36749276 -145665966 + L1ME2 LINE L1 5308 5360 -786 3400 95 24 32 chr6 36749325 36749818 -145665424 - LTR22B LTR ERVK -3 489 1 229 253 27 0 chr6 36749819 36749894 -145665348 + L1ME2 LINE L1 5368 5444 -718 1264 160 5 0 chr6 36749894 36750107 -145665135 + MER46A DNA MER2_type 1 214 -22 588 244 93 65 chr6 36750144 36750527 -145664715 + L1ME2 LINE L1 5470 5887 -277 843 250 0 11 chr6 36750541 36750729 -145664513 - AluJo SINE Alu -7 305 120 1989 128 7 3 chr6 36751075 36751372 -145663870 + AluSx SINE Alu 1 298 -14 267 194 107 97 chr6 36751384 36751487 -145663755 + AluJb SINE Alu 61 164 -138 6340 109 26 21 chr6 36751488 36751543 -145663699 + L1MA1 LINE L1 4850 4903 -1399 2000 133 3 0 chr6 36751543 36751843 -145663399 + AluSx SINE Alu 1 301 -11 6340 109 26 21 chr6 36751843 36752116 -145663126 + L1MA1 LINE L1 4903 5173 -1129 2307 91 3 0 chr6 36752116 36752423 -145662819 + AluSp SINE Alu 1 308 -5 6340 109 26 21 chr6 36752423 36753437 -145661805 + L1MA1 LINE L1 5173 6198 -104 1139 155 5 10 chr6 36753460 36753653 -145661589 + AluJb SINE Alu 121 312 0 279 0 0 0 chr6 36753742 36753773 -145661469 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr6 36753772 36753792 -145661450 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 390 265 120 0 chr6 36753971 36754088 -145661154 - L2 LINE L2 -5 3267 3137 2217 104 3 13 chr6 36755423 36755731 -145659511 - AluSq SINE Alu -6 307 3 1552 201 10 17 chr6 36755741 36756029 -145659213 - AluJo SINE Alu -26 286 1 2140 88 18 0 chr6 36756232 36756517 -145658725 - AluSg SINE Alu -20 290 1 1457 143 121 7 chr6 36756518 36756790 -145658452 - AluJo SINE Alu -9 303 1 578 212 30 30 chr6 36760868 36761000 -145654242 + FLAM_A SINE Alu 1 132 -1 2549 42 0 3 chr6 36761026 36761332 -145653910 + AluY SINE Alu 1 305 -6 776 234 106 9 chr6 36761485 36761703 -145653539 - MIR SINE MIR -21 241 3 590 117 0 32 chr6 36764175 36764269 -145650973 + AluSq/x SINE Alu 42 132 -181 1514 143 155 0 chr6 36764317 36764575 -145650667 - AluSx SINE Alu -14 298 1 1250 143 160 4 chr6 36764578 36764815 -145650427 - AluJb SINE Alu -20 292 19 504 213 28 6 chr6 36764956 36765189 -145650053 - MLT1C LTR MaLR -145 322 54 1840 129 17 10 chr6 36765682 36765976 -145649266 - AluSx SINE Alu -16 296 1 198 0 0 0 chr6 36767199 36767221 -145648021 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 296 277 117 0 chr6 36771471 36771565 -145643677 - MIR SINE MIR -48 214 110 1657 136 53 0 chr6 36772195 36772460 -145642782 - AluSx SINE Alu -14 298 20 2169 100 3 0 chr6 36773287 36773578 -145641664 + AluSg SINE Alu 1 292 -18 957 129 6 79 chr6 36773658 36773836 -145641406 + AluJb SINE Alu 1 165 -147 1992 128 13 7 chr6 36773975 36774280 -145640962 + AluSx SINE Alu 1 307 -5 2072 99 0 26 chr6 36774319 36774623 -145640619 + AluSg SINE Alu 1 296 -14 262 309 0 12 chr6 36774684 36774765 -145640477 + L2 LINE L2 3193 3272 0 261 228 51 38 chr6 36774913 36774992 -145640250 - MIR SINE MIR -21 241 162 1592 210 64 11 chr6 36775001 36775358 -145639884 + Cheshire DNA MER1_type 1 376 -2044 1351 174 35 41 chr6 36775364 36775557 -145639685 + Cheshire DNA MER1_type 2055 2248 -172 1637 168 16 36 chr6 36775557 36775866 -145639376 - AluJb SINE Alu -9 303 1 2168 105 3 3 chr6 36775876 36776181 -145639061 - AluSq SINE Alu -8 305 1 1351 174 35 41 chr6 36776181 36776216 -145639026 + Cheshire DNA MER1_type 2257 2291 -129 2129 85 3 26 chr6 36776216 36776522 -145638720 + AluSx SINE Alu 1 299 -13 2145 113 0 0 chr6 36776522 36776814 -145638428 + AluSx SINE Alu 1 292 -20 1351 174 35 41 chr6 36776814 36776940 -145638302 + Cheshire DNA MER1_type 2289 2420 0 459 328 0 0 chr6 36776953 36777084 -145638158 - MIR SINE MIR -114 148 18 207 0 0 0 chr6 36781214 36781237 -145634005 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 192 125 0 0 chr6 36784699 36784731 -145630511 - MIR SINE MIR -147 115 84 397 203 70 47 chr6 36784790 36784918 -145630324 - MIR SINE MIR -22 240 110 197 272 54 22 chr6 36787234 36787326 -145627916 - MIR SINE MIR -139 123 29 245 229 0 0 chr6 36788345 36788393 -145626849 + G-rich Low_complexity Low_complexity 1 48 0 186 133 0 0 chr6 36788811 36788841 -145626401 + (TCC)n Simple_repeat Simple_repeat 3 32 0 349 231 46 31 chr6 36790167 36790297 -145624945 - L2 LINE L2 -7 3265 3134 675 233 33 73 chr6 36790632 36790738 -145624504 + Charlie1 DNA MER1_type 5 114 -2647 2429 48 0 0 chr6 36790738 36791033 -145624209 + AluY SINE Alu 2 296 -15 2423 47 0 3 chr6 36791041 36791341 -145623901 + AluY SINE Alu 1 299 -12 675 233 33 73 chr6 36791341 36791470 -145623772 + Charlie1 DNA MER1_type 121 239 -2522 662 149 67 8 chr6 36791454 36791588 -145623654 + Charlie1 DNA MER1_type 2620 2761 0 * 2277 102 0 0 chr6 36791649 36791953 -145623289 + AluSx SINE Alu 1 304 -8 277 339 46 8 chr6 36791980 36792110 -145623132 - L2 LINE L2 -613 2701 2567 678 221 0 0 chr6 36792346 36792491 -145622751 + MER33 DNA MER1_type 1 145 -179 1087 179 0 0 chr6 36792491 36792670 -145622572 - AluJb SINE Alu 0 312 134 252 0 0 0 chr6 36792670 36792698 -145622544 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2242 77 0 7 chr6 36792698 36792984 -145622258 - AluSx SINE Alu -28 284 1 2107 112 16 3 chr6 36792994 36793299 -145621943 - AluSq SINE Alu -4 309 1 270 222 63 0 chr6 36793331 36793346 -145621896 - MER46A DNA MER2_type -73 163 145 790 161 0 0 chr6 36793346 36793470 -145621772 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 * 940 114 76 11 chr6 36793466 36793490 -145621752 + Tigger4(Zombi) DNA MER2_type 2525 2546 -185 2242 89 13 10 chr6 36793490 36793794 -145621448 + AluSx SINE Alu 1 305 -7 940 114 76 11 chr6 36793794 36793953 -145621289 + Tigger4(Zombi) DNA MER2_type 2546 2720 -11 650 127 16 0 chr6 36793960 36794086 -145621156 + MER33 DNA MER1_type 197 324 0 215 305 42 32 chr6 36794122 36794217 -145621025 - MIR SINE MIR -146 116 21 729 185 90 42 chr6 36796255 36796444 -145618798 + MIR SINE MIR 2 199 -63 338 309 129 0 chr6 36796702 36796841 -145618401 - L2 LINE L2 0 3272 3116 230 336 96 34 chr6 36796904 36797050 -145618192 + L2 LINE L2 2594 2748 -566 2253 96 3 0 chr6 36797053 36797354 -145617888 + AluSp SINE Alu 1 302 -11 2120 136 0 0 chr6 36797364 36797674 -145617568 + AluSx SINE Alu 1 310 -2 871 259 8 51 chr6 36797700 36797750 -145617492 + MIR SINE MIR 19 70 -192 2218 116 7 0 chr6 36797750 36798060 -145617182 - AluSq SINE Alu -1 312 1 871 259 8 51 chr6 36798060 36798264 -145616978 + MIR SINE MIR 70 262 0 1996 101 0 52 chr6 36798401 36798708 -145616534 + AluSq SINE Alu 3 293 -20 1544 117 36 0 chr6 36798985 36799207 -145616035 - MER30 DNA MER1_type 0 230 1 2153 99 35 0 chr6 36799471 36799755 -145615487 + AluSp SINE Alu 1 294 -19 834 129 0 23 chr6 36799780 36799912 -145615330 + FLAM_C SINE Alu 1 129 -4 307 65 0 0 chr6 36799961 36800007 -145615235 - AluJo SINE Alu 0 302 257 1157 195 0 5 chr6 36800015 36800079 -145615163 - AluJo SINE Alu -113 199 136 2450 83 10 0 chr6 36800079 36800380 -145614862 - AluSp SINE Alu -8 305 2 1157 195 0 5 chr6 36800380 36800515 -145614727 - AluJo SINE Alu -176 136 1 2312 121 0 0 chr6 36800581 36800886 -145614356 + AluSx SINE Alu 1 305 -7 1749 146 0 60 chr6 36800895 36801210 -145614032 + AluJb SINE Alu 5 300 -12 2054 114 3 21 chr6 36801391 36801702 -145613540 + AluSq SINE Alu 1 306 0 2229 82 7 4 chr6 36801707 36802024 -145613218 + AluSp SINE Alu 4 321 0 182 277 170 71 chr6 36802182 36802323 -145612919 + MER5B DNA MER1_type 24 178 0 335 264 7 68 chr6 36803393 36803541 -145611701 - MIR3 SINE MIR -20 188 50 582 225 112 6 chr6 36807414 36807583 -145607659 - MIR SINE MIR -56 206 20 254 306 0 35 chr6 36807801 36807945 -145607297 + (CCCCG)n Simple_repeat Simple_repeat 1 139 0 33 0 0 0 chr6 36808009 36808042 -145607200 + GC_rich Low_complexity Low_complexity 1 33 0 1380 91 50 59 chr6 36808582 36808802 -145606440 + AluJb SINE Alu 88 305 -7 268 260 0 0 chr6 36810377 36810450 -145604792 + CT-rich Low_complexity Low_complexity 2 74 0 276 100 0 0 chr6 36810461 36810501 -145604741 + (TCC)n Simple_repeat Simple_repeat 2 41 0 201 313 12 24 chr6 36811938 36812021 -145603221 + GA-rich Low_complexity Low_complexity 4 85 0 410 296 107 0 chr6 36814588 36814757 -145600485 + Charlie2 DNA MER1_type 35 221 -2641 1511 170 24 114 chr6 36814918 36814960 -145600282 - AluJo SINE Alu 0 312 268 2469 71 7 10 chr6 36814960 36815269 -145599973 + AluSc SINE Alu 1 308 -1 1511 170 24 114 chr6 36815269 36815441 -145599801 - AluJo SINE Alu -44 268 138 2517 57 7 0 chr6 36815441 36815738 -145599504 + AluSx SINE Alu 1 299 -13 1511 170 24 114 chr6 36815738 36815863 -145599379 - AluJo SINE Alu -174 138 3 2430 45 0 54 chr6 36815916 36816230 -145599012 + AluY SINE Alu 1 297 -14 647 218 179 24 chr6 36816256 36816520 -145598722 + Charlie2 DNA MER1_type 2328 2654 -208 2062 112 0 55 chr6 36816520 36816832 -145598410 - AluSg SINE Alu -15 295 1 647 218 179 24 chr6 36816832 36816897 -145598345 + Charlie2 DNA MER1_type 2654 2708 -154 2210 122 3 0 chr6 36816899 36817194 -145598048 + AluSx SINE Alu 1 296 -16 2254 100 0 7 chr6 36817196 36817495 -145597747 + AluSx SINE Alu 1 297 -15 2300 98 3 7 chr6 36817497 36817802 -145597440 + AluSg SINE Alu 1 304 -6 640 167 9 9 chr6 36817810 36817924 -145597318 + FLAM_C SINE Alu 9 122 -21 2196 109 10 16 chr6 36817934 36818238 -145597004 + AluSx SINE Alu 1 302 -10 1631 109 17 13 chr6 36818238 36818475 -145596767 + AluSg/x SINE Alu 71 310 0 488 203 31 61 chr6 36818475 36818520 -145596722 + Charlie2 DNA MER1_type 2705 2750 -112 288 70 0 0 chr6 36818520 36818563 -145596679 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1875 114 21 25 chr6 36818566 36818847 -145596395 - AluSx SINE Alu -32 280 1 488 203 31 61 chr6 36818847 36818960 -145596282 + Charlie2 DNA MER1_type 2752 2862 0 2335 92 10 0 chr6 36818964 36819267 -145595975 + AluSp SINE Alu 1 306 -7 214 306 14 0 chr6 36819810 36819882 -145595360 + MIR3 SINE MIR 135 207 -1 2225 131 0 6 chr6 36820340 36820654 -145594588 - AluSx SINE Alu 0 312 1 204 125 0 0 chr6 36820761 36820793 -145594449 + (T)n Simple_repeat Simple_repeat 1 32 0 2217 115 0 19 chr6 36820816 36821128 -145594114 + AluSx SINE Alu 1 306 -6 2373 89 0 25 chr6 36821352 36821668 -145593574 - AluSg SINE Alu 0 310 3 1584 196 7 11 chr6 36821671 36821946 -145593296 - AluJo SINE Alu -33 279 6 2457 58 0 14 chr6 36822022 36822157 -145593085 + AluY SINE Alu 1 136 -175 2539 78 0 0 chr6 36822157 36822463 -145592779 + AluY SINE Alu 1 306 -5 2457 58 0 14 chr6 36822463 36822622 -145592620 + AluY SINE Alu 136 291 -20 244 355 78 14 chr6 36822691 36822832 -145592410 + MIR SINE MIR 47 196 -66 393 258 8 31 chr6 36823026 36823154 -145592088 - L1MC4 LINE L1 0 8042 7918 267 122 0 0 chr6 36823173 36823214 -145592028 + MLT1C LTR MaLR 1 41 -426 2142 126 13 0 chr6 36823241 36823543 -145591699 + AluY SINE Alu 1 306 -5 2049 137 3 13 chr6 36823548 36823854 -145591388 + AluSg SINE Alu 1 303 -7 1680 95 56 0 chr6 36823873 36824125 -145591117 + L1PA11 LINE L1 5908 6173 -1 2399 153 54 14 chr6 36824126 36824350 -145590892 + MLT1C LTR MaLR 27 241 -226 2174 98 0 34 chr6 36824350 36824486 -145590756 + AluSx SINE Alu 1 140 -172 2299 103 23 0 chr6 36824486 36824788 -145590454 + AluSg SINE Alu 1 309 -1 2174 98 0 34 chr6 36824788 36824946 -145590296 + AluSx SINE Alu 140 285 -27 279 0 0 0 chr6 36824946 36824977 -145590265 + (CA)n Simple_repeat Simple_repeat 2 32 0 2399 153 54 14 chr6 36824977 36825175 -145590067 + MLT1C LTR MaLR 240 467 0 523 174 43 105 chr6 36825182 36825271 -145589971 - L1MC4a LINE L1 -223 7585 7492 1864 123 30 4 chr6 36825271 36825539 -145589703 - AluSx SINE Alu -4 308 34 523 174 43 105 chr6 36825539 36825572 -145589670 - L1MC4a LINE L1 -316 7492 7606 1017 168 0 6 chr6 36825572 36825739 -145589503 - FRAM SINE Alu 0 166 1 523 174 43 105 chr6 36825739 36825866 -145589376 - L1MC4a LINE L1 -201 7607 7474 1179 179 0 0 chr6 36825882 36826077 -145589165 - AluJo SINE Alu -1 311 117 2032 135 0 16 chr6 36826077 36826381 -145588861 + AluSg SINE Alu 1 299 -11 1436 206 88 57 chr6 36826395 36826598 -145588644 + MLT1E LTR MaLR 194 389 -204 2229 122 3 0 chr6 36826598 36826909 -145588333 - AluSx SINE Alu 0 312 1 1436 206 88 57 chr6 36826909 36827093 -145588149 + MLT1E LTR MaLR 389 593 0 628 288 7 7 chr6 36827093 36827244 -145587998 - Zaphod DNA AcHobo -3879 152 2 464 220 5 110 chr6 36827259 36827392 -145587850 - Charlie2 DNA MER1_type -5 2857 2748 2282 116 0 0 chr6 36827392 36827685 -145587557 + AluSg SINE Alu 1 293 -17 464 220 5 110 chr6 36827685 36827742 -145587500 - Charlie2 DNA MER1_type -114 2748 2687 2335 82 0 3 chr6 36827743 36828034 -145587208 + AluSc SINE Alu 3 292 -17 2453 71 10 3 chr6 36828036 36828345 -145586897 + AluY SINE Alu 1 311 0 1209 122 6 0 chr6 36828363 36828519 -145586723 + AluSx SINE Alu 1 157 -155 1645 113 0 26 chr6 36828519 36828750 -145586492 - AluSx SINE Alu -87 225 1 358 222 44 44 chr6 36828770 36828860 -145586382 + L1MC4 LINE L1 6613 6702 -1340 2407 88 3 0 chr6 36828861 36829156 -145586086 - AluSp SINE Alu -17 296 1 293 264 23 0 chr6 36829163 36829250 -145585992 + HAL1 LINE L1 822 910 -1597 2340 105 0 3 chr6 36830079 36830393 -145584849 + AluSq SINE Alu 1 313 0 2585 68 0 3 chr6 36830396 36830707 -145584535 + AluY SINE Alu 1 310 -1 2432 109 0 0 chr6 36830895 36831207 -145584035 + AluSx SINE Alu 1 312 0 1468 166 13 102 chr6 36831238 36831375 -145583867 + AluJo SINE Alu 1 149 -163 2111 126 7 13 chr6 36831375 36831676 -145583566 + AluSx SINE Alu 1 299 -13 2028 130 14 10 chr6 36831686 36831979 -145583263 + AluSx SINE Alu 1 294 -18 2442 83 6 13 chr6 36831984 36832296 -145582946 + AluY SINE Alu 1 310 -1 1468 166 13 102 chr6 36832296 36832307 -145582935 + AluJo SINE Alu 162 172 -140 2014 153 16 0 chr6 36832307 36832615 -145582627 + AluSp SINE Alu 1 313 0 1468 166 13 102 chr6 36832615 36832761 -145582481 + AluJo SINE Alu 172 285 -27 1105 143 6 17 chr6 36832763 36832938 -145582304 - AluSq SINE Alu -59 254 82 342 184 10 51 chr6 36832938 36832960 -145582282 + MER69 DNA AcHobo 2428 2449 -77 2157 96 0 14 chr6 36832960 36833241 -145582001 - AluSx SINE Alu -8 304 28 342 184 10 51 chr6 36833241 36833316 -145581926 + MER69 DNA AcHobo 2449 2521 -5 328 275 38 0 chr6 36833339 36833419 -145581823 - L1MCa LINE L1 -4362 2064 1982 2171 128 0 0 chr6 36833471 36833767 -145581475 - AluSg SINE Alu -14 296 1 716 134 0 107 chr6 36833772 36833921 -145581321 - FLAM_C SINE Alu 0 133 1 1870 125 49 35 chr6 36833968 36834256 -145580986 + AluSx SINE Alu 1 292 -20 522 286 5 71 chr6 36834256 36834445 -145580797 - L1MC/D LINE L1 -2153 5655 5478 1386 119 40 0 chr6 36834445 36834646 -145580596 - AluSg/x SINE Alu -8 304 96 946 162 0 24 chr6 36834646 36834813 -145580429 - AluJb SINE Alu -16 296 134 841 120 0 0 chr6 36834927 36835060 -145580182 + L1PA15 LINE L1 6031 6163 -2 1237 86 0 0 chr6 36836121 36836272 -145578970 - AluSg/x SINE Alu -16 294 144 7232 125 3 19 chr6 36836272 36837433 -145577809 + HERVH LTR ERV1 1688 2830 -4883 11600 106 12 37 chr6 36837433 36839271 -145575971 + HERVH LTR ERV1 3357 5149 -2564 * 14042 89 7 42 chr6 36839268 36841171 -145574071 + HERVH LTR ERV1 5594 7563 -150 245 138 28 0 chr6 36841171 36841226 -145574016 - Alu SINE Alu -268 34 1 14042 89 7 42 chr6 36841226 36841249 -145573993 + HERVH LTR ERV1 7563 7585 -128 2271 106 0 26 chr6 36841249 36841561 -145573681 - AluSx SINE Alu -7 305 2 14042 89 7 42 chr6 36841561 36841777 -145573465 + HERVH LTR ERV1 7585 7713 0 1285 178 186 23 chr6 36841777 36842164 -145573078 + LTR7 LTR ERV1 1 450 0 16075 61 3 16 chr6 36842244 36843959 -145571283 - Harlequin LTR ERV1 -2739 4157 2421 2364 82 0 3 chr6 36843959 36844253 -145570989 - AluSx SINE Alu -19 293 1 16075 61 3 16 chr6 36844253 36844330 -145570912 - Harlequin LTR ERV1 -4475 2421 2345 2567 74 3 0 chr6 36844330 36844640 -145570602 - AluY SINE Alu 0 311 1 16075 61 3 16 chr6 36844640 36844665 -145570577 - Harlequin LTR ERV1 -4551 2345 2321 2396 90 3 3 chr6 36844665 36844965 -145570277 - AluSp SINE Alu -13 300 1 16075 61 3 16 chr6 36844965 36845155 -145570087 - Harlequin LTR ERV1 -4575 2321 2175 2304 94 0 26 chr6 36845155 36845462 -145569780 - AluSx SINE Alu -13 299 1 16075 61 3 16 chr6 36845462 36845602 -145569640 - Harlequin LTR ERV1 -4721 2175 2035 1714 100 15 92 chr6 36845611 36845947 -145569295 + LTR14B LTR ERVK 54 606 -2 648 262 38 27 chr6 36845948 36846131 -145569111 - LTR10A-int LTR ERV1 -6464 185 1 1643 177 115 41 chr6 36846140 36846575 -145568667 - LTR10A LTR ERV1 -61 548 82 1556 100 62 147 chr6 36847261 36847601 -145567641 + AluYb8 SINE Alu 1 311 -7 4571 83 18 32 chr6 36847755 36848379 -145566863 - SVA Other Other 0 1386 772 442 278 18 85 chr6 36848379 36848480 -145566762 + MIR SINE MIR 55 134 -128 1948 159 23 7 chr6 36848480 36848782 -145566460 + AluJo SINE Alu 1 307 -5 442 278 18 85 chr6 36848782 36848903 -145566339 + MIR SINE MIR 134 262 0 2370 89 33 0 chr6 36849262 36849571 -145565671 + AluSx SINE Alu 1 319 0 232 238 75 25 chr6 36850038 36850118 -145565124 + MIR SINE MIR 93 176 -86 570 249 103 5 chr6 36851243 36851428 -145563814 + MLT1L LTR MaLR 408 610 -5 2064 126 33 0 chr6 36851441 36851743 -145563499 - AluSq SINE Alu -1 312 1 280 146 0 0 chr6 36851830 36851871 -145563371 - MER57A LTR ERV1 -68 335 295 203 250 33 50 chr6 36851880 36851940 -145563302 - MIR SINE MIR -201 61 3 2600 58 0 3 chr6 36852831 36853141 -145562101 + AluY SINE Alu 1 309 -2 474 331 92 21 chr6 36853545 36853826 -145561416 - L2 LINE L2 -1 3271 2971 2427 92 0 16 chr6 36853934 36854249 -145560993 + AluSg SINE Alu 1 310 0 1953 123 0 53 chr6 36854344 36854645 -145560597 + AluSx SINE Alu 9 293 -19 243 311 8 0 chr6 36854647 36854766 -145560476 + L1 LINE L1 3646 3765 -2381 366 120 0 67 chr6 36854842 36854917 -145560325 - L1MB5 LINE L1 -286 5888 5819 1012 182 11 6 chr6 36854917 36855098 -145560144 - AluJ SINE Alu -11 301 120 669 140 0 35 chr6 36856735 36856849 -145558393 - AluJ SINE Alu -178 134 25 938 161 0 0 chr6 36856878 36857015 -145558227 - AluJb SINE Alu -10 302 166 1302 145 0 0 chr6 36857015 36857222 -145558020 - L1MB5 LINE L1 -360 5824 5618 2299 172 21 38 chr6 36857223 36857267 -145557975 - MER67A LTR ERV1 -2 541 498 2098 123 3 0 chr6 36857267 36857587 -145557655 + AluSx SINE Alu 1 321 0 2299 172 21 38 chr6 36857587 36858010 -145557232 - MER67A LTR ERV1 -45 498 80 2339 89 0 16 chr6 36858012 36858315 -145556927 + AluSq SINE Alu 1 298 -15 2515 70 0 10 chr6 36858321 36858634 -145556608 - AluY SINE Alu -1 310 1 476 273 87 71 chr6 36858762 36858931 -145556311 + L1ME LINE L1 5258 5423 -739 1961 124 6 59 chr6 36858931 36859296 -145555946 + AluSg SINE Alu 1 310 0 476 273 87 71 chr6 36859296 36859664 -145555578 + L1ME LINE L1 5423 5804 -358 1044 132 0 136 chr6 36859669 36859781 -145555461 - MER3 DNA MER1_type 0 209 146 2270 75 18 0 chr6 36859781 36860060 -145555182 + AluSc SINE Alu 1 284 -25 1044 132 0 136 chr6 36860060 36860189 -145555053 - MER3 DNA MER1_type -63 146 1 778 115 26 94 chr6 36860341 36860380 -145554862 + L1MA8 LINE L1 6071 6111 -180 2169 122 0 0 chr6 36860380 36860675 -145554567 + AluSx SINE Alu 6 300 -12 2332 69 7 14 chr6 36860677 36860968 -145554274 + AluY SINE Alu 1 289 -22 207 0 0 0 chr6 36860970 36860993 -145554249 + (CAAAC)n Simple_repeat Simple_repeat 1 23 0 778 115 26 94 chr6 36860993 36861138 -145554104 + L1MA8 LINE L1 6113 6248 -43 1547 186 54 3 chr6 36861157 36861453 -145553789 + AluJo SINE Alu 1 311 -1 1791 167 0 14 chr6 36861456 36861777 -145553465 + AluJb SINE Alu 1 317 0 1293 120 77 0 chr6 36861849 36862032 -145553210 + AluSx SINE Alu 1 197 -115 2246 98 11 0 chr6 36862066 36862352 -145552890 - AluSx SINE Alu -23 289 1 464 132 0 0 chr6 36862361 36862429 -145552813 - AluJ/FRAM SINE Alu -14 298 231 1956 149 20 0 chr6 36862455 36862751 -145552491 + AluSq SINE Alu 1 302 -11 1978 209 58 7 chr6 36862773 36863218 -145552024 + MER21B LTR ERV1 347 814 -49 777 107 0 107 chr6 36863748 36863897 -145551345 + FLAM_C SINE Alu 1 133 0 2110 101 0 7 chr6 36863902 36864179 -145551063 + AluSx SINE Alu 24 298 -14 2340 100 10 0 chr6 36864181 36864482 -145550760 + AluSx SINE Alu 1 304 -8 2040 196 141 44 chr6 36864525 36865011 -145550231 + LTR29 LTR ERV1 1 438 -184 228 35 0 0 chr6 36865011 36865040 -145550202 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1759 141 69 0 chr6 36865043 36865305 -145549937 - AluSx SINE Alu -32 280 1 2040 196 141 44 chr6 36865305 36865381 -145549861 + LTR29 LTR ERV1 439 622 0 1766 179 0 23 chr6 36865669 36865884 -145549358 - AluJb SINE Alu -18 294 76 4786 72 19 84 chr6 36865884 36866053 -145549189 - LTR8 LTR ERV1 -2 689 511 2168 124 20 0 chr6 36866053 36866359 -145548883 - AluSx SINE Alu 0 312 1 4786 72 19 84 chr6 36866359 36866651 -145548591 - LTR8 LTR ERV1 -180 511 291 2354 115 0 0 chr6 36866651 36866964 -145548278 - AluSq SINE Alu 0 313 1 4786 72 19 84 chr6 36866964 36867238 -145548004 - LTR8 LTR ERV1 -400 291 1 1766 179 0 23 chr6 36867238 36867323 -145547919 - AluJb SINE Alu -236 76 1 2150 111 0 36 chr6 36867372 36867679 -145547563 + AluSq SINE Alu 1 296 -17 3904 115 13 0 chr6 36867695 36868242 -145547000 - MER41A LTR ERV1 0 554 1 1150 50 15 23 chr6 36868289 36868572 -145546670 + AluY SINE Alu 2 352 0 814 159 0 100 chr6 36868574 36868744 -145546498 - FAM SINE Alu -32 153 1 1107 148 0 34 chr6 36869078 36869254 -145545988 + AluSg/x SINE Alu 123 292 -20 1523 102 0 0 chr6 36869256 36869453 -145545789 + AluSc SINE Alu 1 197 -112 507 114 0 0 chr6 36869453 36869532 -145545710 + AluS SINE Alu 231 309 -3 703 136 24 32 chr6 36869532 36869657 -145545585 + AluSg SINE Alu 8 131 -179 1261 128 0 0 chr6 36869706 36869886 -145545356 + AluSg SINE Alu 119 298 -12 2212 104 3 0 chr6 36869948 36870237 -145545005 + AluSx SINE Alu 1 290 -22 2233 78 0 7 chr6 36870275 36870557 -145544685 - AluSc SINE Alu -12 297 18 805 194 0 8 chr6 36870593 36870609 -145544633 - FLAM_C SINE Alu -169 133 118 192 40 0 0 chr6 36870609 36870634 -145544608 + (TG)n Simple_repeat Simple_repeat 2 26 0 805 194 0 8 chr6 36870634 36870751 -145544491 - FLAM_C SINE Alu -184 118 1 623 320 55 33 chr6 36870821 36871240 -145544002 + L2 LINE L2 2337 2764 -550 1130 135 26 109 chr6 36871268 36871324 -145543918 + LTR51 LTR ERV1 24 83 -588 2441 88 3 3 chr6 36871324 36871632 -145543610 + AluSg SINE Alu 1 308 -2 1130 135 26 109 chr6 36871632 36871841 -145543401 + LTR51 LTR ERV1 83 267 -404 2152 91 11 11 chr6 36871843 36872157 -145543085 - AluSx SINE Alu 0 314 1 849 186 0 0 chr6 36872262 36872402 -145542840 - FLAM_C SINE Alu -3 140 1 548 157 0 0 chr6 36873086 36873169 -145542073 + AluJ/FLAM SINE Alu 2 84 -228 666 274 34 53 chr6 36873169 36873293 -145541949 - MLT1J LTR MaLR -46 465 340 2474 82 0 22 chr6 36873293 36873609 -145541633 - AluSx SINE Alu -1 311 3 666 274 34 53 chr6 36873609 36873884 -145541358 - MLT1J LTR MaLR -171 340 3 307 71 0 0 chr6 36874094 36874136 -145541106 - AluJb SINE Alu -195 107 66 291 383 26 0 chr6 36874444 36874559 -145540683 + L2 LINE L2 3116 3233 -39 2234 102 6 16 chr6 36874604 36874917 -145540325 - AluSg SINE Alu 0 310 1 1919 161 28 0 chr6 36875295 36875586 -145539656 - AluJb SINE Alu -13 299 1 2158 105 7 23 chr6 36875597 36875902 -145539340 - AluSp SINE Alu -13 300 1 2355 96 0 0 chr6 36875902 36876193 -145539049 - AluSq SINE Alu -21 292 1 1627 154 7 32 chr6 36876617 36876897 -145538345 + AluSx SINE Alu 30 302 -10 1362 183 23 108 chr6 36876938 36877337 -145537905 + MLT1A1 LTR MaLR 1 365 0 858 137 0 0 chr6 36877623 36877740 -145537502 + FLAM_C SINE Alu 2 118 -25 22 35 0 0 chr6 36877740 36877769 -145537473 + AT_rich Low_complexity Low_complexity 1 29 0 2156 128 10 19 chr6 36877769 36878082 -145537160 + AluSx SINE Alu 1 310 -2 2260 89 0 0 chr6 36878137 36878417 -145536825 + AluSg SINE Alu 1 280 -30 2172 85 78 0 chr6 36878420 36878702 -145536540 + AluY SINE Alu 1 304 -7 23 0 0 0 chr6 36878714 36878737 -145536505 + AT_rich Low_complexity Low_complexity 1 23 0 201 296 0 0 chr6 36878847 36878918 -145536324 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 2119 133 0 10 chr6 36879046 36879346 -145535896 - AluSq SINE Alu -15 298 2 2505 78 7 0 chr6 36879410 36879717 -145535525 - AluSg1 SINE Alu 0 309 1 478 35 0 0 chr6 36879839 36879897 -145535345 - AluSq SINE Alu -122 191 134 2552 51 0 13 chr6 36879898 36880213 -145535029 - AluY SINE Alu 0 311 1 653 285 131 7 chr6 36880287 36880698 -145534544 - L1M4 LINE L1 -1820 4326 3865 23 33 0 0 chr6 36880719 36880749 -145534493 + AT_rich Low_complexity Low_complexity 1 30 0 216 291 196 48 chr6 36881212 36881432 -145533810 + MIR3 SINE MIR 3 250 -12 1229 239 125 30 chr6 36883193 36883757 -145531485 - L2 LINE L2 -4 3309 2713 2047 123 3 23 chr6 36883796 36884106 -145531136 - AluJb SINE Alu -7 305 2 2336 77 3 0 chr6 36884110 36884407 -145530835 - AluY SINE Alu -13 298 1 525 163 10 0 chr6 36884408 36884506 -145530736 + MER20 DNA MER1_type 60 158 -61 369 130 0 0 chr6 36884510 36884564 -145530678 - MER20 DNA MER1_type -165 54 1 2753 227 172 46 chr6 36884566 36884851 -145530391 - L2 LINE L2 -694 2620 2372 2223 110 0 7 chr6 36884851 36885143 -145530099 - AluSx SINE Alu -22 290 1 2753 227 172 46 chr6 36885143 36885836 -145529406 - L2 LINE L2 -942 2372 1519 411 242 118 31 chr6 36886329 36886490 -145528752 - L2 LINE L2 -1 3312 3138 538 252 87 0 chr6 36886608 36886735 -145528507 + FLAM_A SINE Alu 1 138 -4 1009 106 19 50 chr6 36886788 36886949 -145528293 - AluJb SINE Alu -1 311 156 2535 57 0 7 chr6 36887042 36887343 -145527899 - AluY SINE Alu -12 299 1 2040 110 51 7 chr6 36887346 36887638 -145527604 - AluSx SINE Alu -7 305 1 2423 100 0 0 chr6 36887658 36887957 -145527285 - AluSg SINE Alu -11 299 1 188 259 49 62 chr6 36888025 36888106 -145527136 + L2 LINE L2 2839 2918 -395 2313 92 6 19 chr6 36888811 36889127 -145526115 - AluSx SINE Alu 0 312 1 451 189 0 0 chr6 36889395 36889469 -145525773 - MER2 DNA MER2_type 0 345 272 2017 104 42 7 chr6 36889471 36889758 -145525484 + AluSx SINE Alu 5 301 -11 2716 153 49 6 chr6 36889809 36890319 -145524923 - Tigger3b DNA MER2_type -2 1229 698 2400 78 0 20 chr6 36891007 36891313 -145523929 - AluY SINE Alu -11 300 1 443 128 86 8 chr6 36891313 36891430 -145523812 - Tigger3b DNA MER2_type -535 696 571 245 149 0 21 chr6 36891436 36891483 -145523759 + LTR56 LTR ERV1 349 394 -51 2342 108 0 0 chr6 36891489 36891795 -145523447 - AluY SINE Alu -5 306 1 3273 135 47 31 chr6 36891815 36892066 -145523176 - Tigger3b DNA MER2_type -2397 631 386 2449 67 0 13 chr6 36892066 36892366 -145522876 - AluY SINE Alu -15 296 1 3273 135 47 31 chr6 36892366 36892735 -145522507 - Tigger3b DNA MER2_type -2642 386 1 837 146 5 137 chr6 36892735 36892801 -145522441 - MER2 DNA MER2_type -155 190 117 2276 101 0 26 chr6 36892801 36893107 -145522135 + AluSq SINE Alu 1 298 -15 1755 125 12 0 chr6 36893108 36893348 -145521894 + AluSp SINE Alu 42 284 -29 837 146 5 137 chr6 36893348 36893498 -145521744 - MER2 DNA MER2_type -227 118 1 236 312 73 63 chr6 36894800 36895005 -145520237 + L2 LINE L2 2828 3034 -238 375 276 57 8 chr6 36896212 36896335 -145518907 + L2 LINE L2 2836 2964 -350 2025 172 0 0 chr6 36897488 36897791 -145517451 + AluJb SINE Alu 1 303 -9 698 253 54 17 chr6 36897791 36898032 -145517210 - L1MC4a LINE L1 -1946 5862 5613 310 282 43 103 chr6 36898031 36898265 -145516977 - L1MEd LINE L1 -5571 548 329 * 334 256 152 26 chr6 36898439 36898708 -145516534 - L1MC5 LINE L1 -262 7699 7397 651 246 79 9 chr6 36898816 36899044 -145516198 - L1MC5 LINE L1 -747 7214 6971 540 148 0 0 chr6 36899061 36899149 -145516093 - AluJ/FRAM SINE Alu -7 305 218 275 116 0 0 chr6 36899150 36899193 -145516049 - Alu SINE Alu -259 43 1 295 159 190 137 chr6 36899197 36899252 -145515990 - L1MC4a LINE L1 -881 6927 6876 2376 58 24 3 chr6 36899252 36899547 -145515695 + AluY SINE Alu 1 301 -10 295 159 190 137 chr6 36899547 36899670 -145515572 - L1MC4a LINE L1 -932 6876 6730 441 0 0 0 chr6 36900067 36900116 -145515126 + (TG)n Simple_repeat Simple_repeat 2 50 0 383 297 0 0 chr6 36901274 36901385 -145513857 + C-rich Low_complexity Low_complexity 1 111 0 22 35 0 0 chr6 36901615 36901644 -145513598 + GC_rich Low_complexity Low_complexity 1 29 0 2298 109 0 3 chr6 36902242 36902553 -145512689 + AluSg SINE Alu 1 310 0 468 288 60 38 chr6 36903365 36903549 -145511693 + MIR SINE MIR 74 261 -1 28 0 0 0 chr6 36906692 36906720 -145508522 + AT_rich Low_complexity Low_complexity 1 28 0 245 258 0 15 chr6 36910369 36910435 -145504807 + CT-rich Low_complexity Low_complexity 3 67 0 570 112 8 37 chr6 36910464 36910598 -145504644 + (TCC)n Simple_repeat Simple_repeat 1 130 0 333 314 0 38 chr6 36910703 36910888 -145504354 + G-rich Low_complexity Low_complexity 2 179 0 337 314 26 7 chr6 36911159 36911312 -145503930 + GA-rich Low_complexity Low_complexity 4 159 0 229 258 16 0 chr6 36915768 36915830 -145499412 + GA-rich Low_complexity Low_complexity 2 64 0 275 247 0 26 chr6 36916913 36916990 -145498252 + CT-rich Low_complexity Low_complexity 4 78 0 277 232 0 42 chr6 36917487 36917582 -145497660 + (TG)n Simple_repeat Simple_repeat 2 92 0 307 247 11 22 chr6 36918211 36918300 -145496942 + (CGG)n Simple_repeat Simple_repeat 3 90 0 221 239 28 0 chr6 36918302 36918373 -145496869 + (CCG)n Simple_repeat Simple_repeat 1 73 0 200 247 54 0 chr6 36918328 36918421 -145496821 + (CCGCG)n Simple_repeat Simple_repeat 5 102 0 * 234 252 34 34 chr6 36918476 36918595 -145496647 + G-rich Low_complexity Low_complexity 1 119 0 192 77 0 0 chr6 36918600 36918626 -145496616 + (CGG)n Simple_repeat Simple_repeat 3 28 0 225 325 12 0 chr6 36919333 36919416 -145495826 + GA-rich Low_complexity Low_complexity 3 86 0 281 282 17 17 chr6 36919985 36920102 -145495140 + (TG)n Simple_repeat Simple_repeat 2 118 0 230 245 0 0 chr6 36922687 36922736 -145492506 + GA-rich Low_complexity Low_complexity 1 49 0 246 62 0 0 chr6 36922830 36922862 -145492380 + (TG)n Simple_repeat Simple_repeat 1 32 0 31 26 0 0 chr6 36924053 36924091 -145491151 + GC_rich Low_complexity Low_complexity 1 38 0 198 322 17 0 chr6 36924581 36924640 -145490602 - L2 LINE L2 0 3313 3254 849 137 8 23 chr6 36924872 36925003 -145490239 - FLAM_C SINE Alu -2 131 3 1581 85 163 60 chr6 36925184 36925466 -145489776 + AluSx SINE Alu 1 311 -1 251 292 45 11 chr6 36926203 36926292 -145488950 - L3 LINE CR1 -1 1576 1485 273 197 16 134 chr6 36926303 36926430 -145488812 + MIR3 SINE MIR 97 208 0 * 317 322 231 30 chr6 36926405 36926680 -145488562 - L3 LINE CR1 -336 1241 1022 2299 106 0 0 chr6 36926680 36926981 -145488261 - AluSx SINE Alu -11 301 1 317 322 231 30 chr6 36926981 36927134 -145488108 - L3 LINE CR1 -555 1022 727 1618 209 34 59 chr6 36927150 36927516 -145487726 - MLT1C LTR MaLR -5 462 109 2023 114 3 17 chr6 36927516 36927813 -145487429 - AluSq SINE Alu -20 293 1 1618 209 34 59 chr6 36927813 36927920 -145487322 - MLT1C LTR MaLR -358 109 1 320 274 76 38 chr6 36929368 36929525 -145485717 - L2 LINE L2 -23 3290 3128 2215 105 3 0 chr6 36929932 36930226 -145485016 + AluSp SINE Alu 1 295 -18 306 409 39 18 chr6 36930326 36930607 -145484635 - L2 LINE L2 -725 2589 2303 363 232 21 35 chr6 36930731 36930873 -145484369 + CT-rich Low_complexity Low_complexity 6 145 0 234 62 0 0 chr6 36931041 36931073 -145484169 + (TC)n Simple_repeat Simple_repeat 1 32 0 180 163 0 0 chr6 36931348 36931391 -145483851 + (CAGGG)n Simple_repeat Simple_repeat 3 45 0 441 54 0 0 chr6 36931452 36931508 -145483734 + (TG)n Simple_repeat Simple_repeat 1 56 0 184 224 0 24 chr6 36932865 36932950 -145482292 + CT-rich Low_complexity Low_complexity 4 86 0 246 62 0 0 chr6 36933782 36933814 -145481428 + (CCA)n Simple_repeat Simple_repeat 2 33 0 380 230 0 0 chr6 36934442 36934516 -145480726 - L2 LINE L2 -7 3306 3233 645 165 28 60 chr6 36935705 36935887 -145479355 + MER105 DNA DNA 28 203 -1 524 157 327 19 chr6 36935893 36935998 -145479244 + MER3 DNA MER1_type 2 73 -136 1707 152 0 62 chr6 36935998 36936321 -145478921 - AluJb SINE Alu -9 303 1 524 157 327 19 chr6 36936321 36936374 -145478868 + MER3 DNA MER1_type 73 209 0 242 254 0 0 chr6 36943291 36943350 -145471892 + C-rich Low_complexity Low_complexity 5 63 0 201 178 22 0 chr6 36943815 36943860 -145471382 + C-rich Low_complexity Low_complexity 4 49 0 224 321 168 0 chr6 36944435 36944612 -145470630 + MIR SINE MIR 40 253 -9 233 196 0 0 chr6 36946085 36946131 -145469111 + GA-rich Low_complexity Low_complexity 3 48 0 2023 108 0 11 chr6 36948109 36948417 -145466825 - AluY SINE Alu 0 305 1 2159 120 3 0 chr6 36948518 36948827 -145466415 - AluSx SINE Alu -2 310 1 888 143 0 0 chr6 36948829 36948955 -145466287 - AluJo/FLAM SINE Alu -175 127 2 349 339 0 8 chr6 36949580 36949701 -145465541 - LTR67 LTR ERVL -3 554 435 402 209 88 0 chr6 36950431 36950522 -145464720 + MIR SINE MIR 163 261 -1 7375 30 0 1 chr6 36950598 36951456 -145463786 + L1PA3 LINE L1 5296 6152 -3 195 281 62 0 chr6 36951759 36951823 -145463419 + L2 LINE L2 2175 2242 -1072 2405 105 0 9 chr6 36951828 36952143 -145463099 - AluSx SINE Alu 0 312 1 435 298 209 11 chr6 36952332 36952701 -145462541 + L2 LINE L2 2324 2765 -549 481 165 304 0 chr6 36952953 36953068 -145462174 + L1PA16 LINE L1 6006 6155 -11 230 171 0 0 chr6 36953076 36953117 -145462125 + MER41C LTR ERV1 386 426 -128 2199 117 0 0 chr6 36953227 36953533 -145461709 - AluSx SINE Alu 0 306 1 712 179 0 45 chr6 36953536 36953670 -145461572 - AluJo/FLAM SINE Alu -182 130 3 749 324 114 20 chr6 36953885 36954390 -145460852 - L2 LINE L2 -417 2897 2338 2166 101 45 0 chr6 36954390 36954677 -145460565 + AluSx SINE Alu 1 300 -12 749 324 114 20 chr6 36954677 36954708 -145460534 - L2 LINE L2 -976 2338 2311 534 194 75 0 chr6 36954737 36954871 -145460371 - Cheshire DNA MER1_type -2 2418 2275 998 118 20 0 chr6 36954873 36955026 -145460216 - MSTC LTR MaLR -51 377 222 3063 125 91 65 chr6 36955030 36955146 -145460096 - Cheshire DNA MER1_type -146 2274 2162 2267 113 0 0 chr6 36955146 36955446 -145459796 - AluSx SINE Alu -12 300 1 3063 125 91 65 chr6 36955446 36955618 -145459624 - Cheshire DNA MER1_type -258 2162 1996 2790 82 3 0 chr6 36955618 36955970 -145459272 + THE1A LTR MaLR 3 355 0 12160 90 5 0 chr6 36955970 36957543 -145457699 + THE1A-int LTR MaLR 1 1580 0 2582 87 17 22 chr6 36957543 36957900 -145457342 + THE1A LTR MaLR 1 355 0 3063 125 91 65 chr6 36957900 36958012 -145457230 - Cheshire DNA MER1_type -424 1996 1888 1829 145 10 24 chr6 36958012 36958301 -145456941 - AluJb SINE Alu -17 295 11 3063 125 91 65 chr6 36958301 36958569 -145456673 - Cheshire DNA MER1_type -532 1888 1585 1848 160 3 10 chr6 36958569 36958869 -145456373 + AluSx SINE Alu 1 298 -14 2205 101 6 15 chr6 36958875 36959201 -145456041 + L1PA15 LINE L1 5838 6160 -5 1982 178 0 6 chr6 36959201 36959543 -145455699 - MLT2C1 LTR ERVL -57 340 1 610 203 0 8 chr6 36959559 36959686 -145455556 - Cheshire DNA MER1_type -919 1501 1376 1143 183 193 19 chr6 36959686 36959997 -145455245 - MLT1A1 LTR MaLR 0 365 1 * 3783 174 36 38 chr6 36959997 36960780 -145454462 - Cheshire DNA MER1_type -1053 1367 584 2375 84 0 3 chr6 36960780 36961076 -145454166 - AluY SINE Alu -16 295 1 3783 174 36 38 chr6 36961076 36961117 -145454125 - Cheshire DNA MER1_type -1836 584 543 2246 105 6 25 chr6 36961117 36961431 -145453811 - AluSx SINE Alu -4 308 1 3783 174 36 38 chr6 36961431 36961457 -145453785 - Cheshire DNA MER1_type -1877 543 518 1879 176 10 0 chr6 36961460 36961767 -145453475 + AluJb SINE Alu 1 310 -2 476 59 0 0 chr6 36961790 36961858 -145453384 + L1PB1 LINE L1 6084 6151 0 693 152 25 61 chr6 36961888 36962085 -145453157 + L1MC5 LINE L1 7334 7523 -438 294 29 0 0 chr6 36962093 36962128 -145453114 + U2 snRNA snRNA 1 35 -153 854 203 13 0 chr6 36962134 36962292 -145452950 + FRAM SINE Alu 1 160 -16 345 229 7 93 chr6 36962292 36962432 -145452810 + L1MC5 LINE L1 7522 7649 -312 2212 75 0 65 chr6 36962433 36962741 -145452501 - AluSp SINE Alu -4 309 22 22 0 0 0 chr6 36962932 36962954 -145452288 + GC_rich Low_complexity Low_complexity 1 22 0 204 178 0 44 chr6 36963073 36963118 -145452124 + (TGG)n Simple_repeat Simple_repeat 2 44 0 258 316 0 54 chr6 36963935 36964103 -145451139 + G-rich Low_complexity Low_complexity 4 162 0 23 0 0 0 chr6 36970424 36970447 -145444795 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr6 36970504 36970527 -145444715 + (TG)n Simple_repeat Simple_repeat 1 23 0 255 133 0 0 chr6 36973121 36973166 -145442076 + (GGA)n Simple_repeat Simple_repeat 2 46 0 407 242 75 38 chr6 36973690 36973725 -145441517 - MER58A DNA MER1_type -2219 201 169 1736 138 93 13 chr6 36973725 36974037 -145441205 - MER1B DNA MER1_type 0 337 1 407 242 75 38 chr6 36974037 36974187 -145441055 - MER58A DNA MER1_type -2251 169 9 1944 101 54 82 chr6 36974281 36974597 -145440645 - AluSx SINE Alu -5 307 1 524 196 122 20 chr6 36974655 36974803 -145440439 + Tigger1 DNA MER2_type 1 163 -2255 1788 57 102 4 chr6 36976967 36977212 -145438030 + AluY SINE Alu 23 291 -20 197 331 145 24 chr6 36977591 36977715 -145437527 - MER5B DNA MER1_type -37 141 3 959 242 35 27 chr6 36979476 36979732 -145435510 - MIR SINE MIR -2 260 3 211 382 0 30 chr6 36979836 36979967 -145435275 - L2 LINE L2 -683 2631 2505 977 176 11 11 chr6 36980432 36980608 -145434634 - FRAM SINE Alu 0 176 1 1534 102 78 4 chr6 36980837 36981092 -145434150 - THE1C LTR MaLR 0 375 102 1993 126 72 13 chr6 36981226 36981544 -145433698 - MER1B DNA MER1_type 0 337 1 475 200 142 0 chr6 36981552 36981672 -145433570 - MIR SINE MIR -6 256 120 1950 134 0 21 chr6 36982558 36982848 -145432394 - AluSx SINE Alu -24 288 5 276 341 31 16 chr6 36983698 36983827 -145431415 - MIR SINE MIR -6 256 126 320 197 0 0 chr6 36983928 36983989 -145431253 - AluS SINE Alu -240 61 1 2134 124 3 0 chr6 36984015 36984306 -145430936 + AluSg SINE Alu 1 292 -18 1310 218 66 3 chr6 36984646 36984935 -145430307 + AluJo SINE Alu 1 307 -5 395 202 77 48 chr6 36984969 36985073 -145430169 + MER5A DNA MER1_type 80 186 -3 2151 130 0 0 chr6 36985199 36985492 -145429750 + AluSg SINE Alu 1 293 -17 1988 149 7 0 chr6 36985545 36985841 -145429401 + AluSx SINE Alu 1 298 -14 559 222 16 56 chr6 36985863 36985989 -145429253 - FLAM_A SINE Alu -12 121 1 5568 72 33 53 chr6 36986021 36986984 -145428258 + SVA Other Other 25 866 -592 183 80 0 0 chr6 36987092 36987117 -145428125 + (A)n Simple_repeat Simple_repeat 1 25 0 2174 79 3 59 chr6 36987447 36987751 -145427491 - AluSp SINE Alu -20 293 7 210 71 0 0 chr6 36988284 36988312 -145426930 + (T)n Simple_repeat Simple_repeat 1 28 0 1528 124 5 0 chr6 36988513 36988730 -145426512 + AluSg/x SINE Alu 84 301 -9 817 61 0 0 chr6 36988732 36988830 -145426412 + AluSg SINE Alu 1 98 -212 2012 66 8 0 chr6 36988830 36989072 -145426170 + AluSg SINE Alu 54 297 -13 2041 131 24 0 chr6 36992854 36993152 -145422090 + AluSx SINE Alu 1 305 -7 2122 94 3 49 chr6 36993755 36994063 -145421179 + AluSx SINE Alu 1 294 -18 2239 110 7 3 chr6 36994070 36994370 -145420872 + AluSq SINE Alu 1 301 -12 272 157 78 0 chr6 36994380 36994431 -145420811 + L1MB5 LINE L1 6042 6096 -78 691 113 0 0 chr6 36994431 36994528 -145420714 + AluJb SINE Alu 211 307 -5 2496 75 0 0 chr6 36995102 36995407 -145419835 + AluSg SINE Alu 1 305 -5 1107 83 89 0 chr6 36996195 36996352 -145418890 + AluJb SINE Alu 136 306 -6 212 283 0 0 chr6 36996818 36996871 -145418371 + C-rich Low_complexity Low_complexity 1 53 0 1767 154 32 4 chr6 36997729 36998008 -145417234 - AluJo SINE Alu -19 293 7 7278 44 8 0 chr6 36999063 37000574 -145414668 - L1PA4 LINE L1 0 6155 4638 380 296 107 0 chr6 37002519 37002688 -145412554 + Charlie2 DNA MER1_type 35 221 -2641 945 130 36 148 chr6 37002829 37002891 -145412351 - AluJo SINE Alu 0 325 258 2451 71 7 10 chr6 37002891 37003199 -145412043 + AluSc SINE Alu 1 307 -2 945 130 36 148 chr6 37003199 37003372 -145411870 - AluJo SINE Alu -67 258 115 2276 85 3 0 chr6 37003372 37003654 -145411588 + AluSx SINE Alu 1 283 -29 644 204 7 15 chr6 37003667 37003804 -145411438 - MER2 DNA MER2_type -209 136 1 236 312 73 63 chr6 37005105 37005310 -145409932 + L2 LINE L2 2828 3034 -238 384 268 57 8 chr6 37006517 37006640 -145408602 + L2 LINE L2 2836 2964 -350 2025 172 0 0 chr6 37007793 37008096 -145407146 + AluJb SINE Alu 1 303 -9 698 253 54 17 chr6 37008096 37008337 -145406905 - L1MC4a LINE L1 -1946 5862 5613 310 282 43 103 chr6 37008336 37008570 -145406672 - L1MEd LINE L1 -5571 548 329 * 334 256 152 26 chr6 37008744 37009013 -145406229 - L1MC5 LINE L1 -262 7699 7397 651 246 79 9 chr6 37009121 37009349 -145405893 - L1MC5 LINE L1 -747 7214 6971 540 148 0 0 chr6 37009366 37009454 -145405788 - AluJ/FRAM SINE Alu -7 305 218 275 116 0 0 chr6 37009455 37009498 -145405744 - Alu SINE Alu -260 43 1 295 159 190 137 chr6 37009502 37009557 -145405685 - L1MC4a LINE L1 -881 6927 6876 2387 54 24 3 chr6 37009557 37009852 -145405390 + AluY SINE Alu 1 301 -10 295 159 190 137 chr6 37009852 37009975 -145405267 - L1MC4a LINE L1 -932 6876 6730 1508 238 37 17 chr6 37010497 37010904 -145404338 - Zaphod DNA AcHobo -3616 415 1 2182 319 148 43 chr6 37010911 37010949 -145404293 - L2 LINE L2 -943 2371 2338 2368 95 0 3 chr6 37010949 37011253 -145403989 + AluSq SINE Alu 1 303 -10 2182 319 148 43 chr6 37011253 37011932 -145403310 - L2 LINE L2 -976 2338 1732 1749 170 0 65 chr6 37011932 37012255 -145402987 - AluJo SINE Alu -10 302 1 2182 319 148 43 chr6 37012255 37013618 -145401624 - L2 LINE L2 -1582 1732 71 2188 108 7 10 chr6 37013635 37013941 -145401301 + AluSx SINE Alu 1 305 -7 1791 148 76 10 chr6 37013951 37014242 -145401000 + AluSg SINE Alu 1 310 0 280 152 30 0 chr6 37014245 37014311 -145400931 + GA-rich Low_complexity Low_complexity 2 69 0 702 233 71 57 chr6 37014317 37014502 -145400740 + MIR SINE MIR 20 201 -61 2616 102 57 38 chr6 37014502 37014843 -145400399 + MSTA LTR MaLR 1 334 -94 1852 148 28 24 chr6 37014843 37015134 -145400108 - AluJb SINE Alu -19 293 2 2378 100 0 0 chr6 37015141 37015441 -145399801 - AluSx SINE Alu -11 301 2 2616 102 57 38 chr6 37015441 37015511 -145399731 + MSTA LTR MaLR 339 428 0 702 233 71 57 chr6 37015511 37015535 -145399707 + MIR SINE MIR 201 232 -30 2325 118 0 0 chr6 37016202 37016507 -145398735 + AluSq SINE Alu 1 305 -8 1705 161 12 62 chr6 37016635 37016831 -145398411 - AluJb SINE Alu -5 307 132 2350 80 7 0 chr6 37016831 37017120 -145398122 + AluSg SINE Alu 1 291 -19 1705 161 12 62 chr6 37017120 37017246 -145397996 - AluJb SINE Alu -180 132 1 546 241 0 50 chr6 37017840 37017981 -145397261 + MLT1E3 LTR MaLR 55 188 -436 501 32 0 0 chr6 37018573 37018636 -145396606 + (TG)n Simple_repeat Simple_repeat 2 64 0 676 223 42 12 chr6 37018714 37018782 -145396460 - MER97a DNA MER1_type? -718 176 112 2361 102 0 0 chr6 37018782 37019086 -145396156 + AluSx SINE Alu 1 304 -8 676 223 42 12 chr6 37019086 37019183 -145396059 - MER97a DNA MER1_type? -782 112 6 2416 102 0 3 chr6 37019439 37019752 -145395490 + AluSx SINE Alu 1 312 0 1001 195 53 11 chr6 37019818 37020211 -145395031 - Charlie4a DNA MER1_type -1 507 61 918 170 24 24 chr6 37020259 37020424 -145394818 + AluJb SINE Alu 138 302 -10 709 128 16 0 chr6 37020432 37020557 -145394685 + GA-rich Low_complexity Low_complexity 2 128 0 690 124 10 0 chr6 37020568 37020665 -145394577 + AluS SINE Alu 2 99 -214 2529 51 3 0 chr6 37020776 37021072 -145394170 + AluY SINE Alu 1 297 -14 2402 67 0 17 chr6 37021083 37021380 -145393862 + AluY SINE Alu 1 292 -19 664 224 0 8 chr6 37021389 37021514 -145393728 + FLAM_A SINE Alu 2 125 -8 456 211 60 70 chr6 37021809 37021994 -145393248 + L1MC5 LINE L1 5831 6013 -1795 350 129 0 16 chr6 37022104 37022166 -145393076 + AluJ SINE Alu 67 127 -175 992 144 39 0 chr6 37022212 37022365 -145392877 + AluJ SINE Alu 132 290 -22 210 37 0 0 chr6 37022365 37022392 -145392850 + (GA)n Simple_repeat Simple_repeat 2 28 0 2435 93 0 0 chr6 37022414 37022714 -145392528 - AluSc SINE Alu -9 300 1 2208 106 11 0 chr6 37022909 37023231 -145392011 - AluSq SINE Alu 0 325 1 598 273 55 83 chr6 37023232 37023363 -145391879 + L1MC5 LINE L1 6495 6628 -1333 2318 103 0 13 chr6 37023363 37023675 -145391567 + AluY SINE Alu 1 308 -3 598 273 55 83 chr6 37023675 37023695 -145391547 + L1MC5 LINE L1 6628 6647 -1314 1810 164 13 17 chr6 37023695 37023994 -145391248 + AluJb SINE Alu 1 298 -14 598 273 55 83 chr6 37023994 37024028 -145391214 + L1MC5 LINE L1 6647 6680 -1281 207 0 0 0 chr6 37024028 37024051 -145391191 + (CA)n Simple_repeat Simple_repeat 2 24 0 598 273 55 83 chr6 37024051 37024256 -145390986 + L1MC5 LINE L1 6680 6889 -1072 2229 104 23 10 chr6 37024256 37024564 -145390678 + AluSx SINE Alu 1 312 0 598 273 55 83 chr6 37024564 37024831 -145390411 + L1MC5 LINE L1 6889 7046 -915 1896 153 0 29 chr6 37024831 37025139 -145390103 + AluJb SINE Alu 1 299 -13 598 273 55 83 chr6 37025139 37025231 -145390011 + L1MC5 LINE L1 7046 7139 -822 2117 119 17 10 chr6 37025255 37025548 -145389694 - AluSx SINE Alu -17 295 1 283 288 86 23 chr6 37025602 37025859 -145389383 + L1MC4 LINE L1 7150 7422 -620 2326 101 0 22 chr6 37026725 37027042 -145388200 - AluSg SINE Alu 0 310 1 1630 191 32 67 chr6 37027133 37027360 -145387882 - MLT1B LTR MaLR 0 390 182 2133 103 31 0 chr6 37027360 37027650 -145387592 - AluSx SINE Alu -13 299 1 1630 191 32 67 chr6 37027650 37027825 -145387417 - MLT1B LTR MaLR -208 182 2 465 247 67 0 chr6 37028184 37028334 -145386908 - L1M4 LINE L1 -1353 4793 4634 354 248 119 0 chr6 37028337 37028438 -145386804 - L1M4 LINE L1 -1544 4602 4490 1211 99 0 25 chr6 37028443 37028635 -145386607 - AluSg/x SINE Alu 0 310 131 1754 181 38 91 chr6 37028650 37028824 -145386418 - L1MA9 LINE L1 -30 6282 6100 2223 96 7 10 chr6 37028824 37029126 -145386116 + AluSx SINE Alu 1 301 -11 1754 181 38 91 chr6 37029126 37029509 -145385733 - L1MA9 LINE L1 -212 6100 5755 1687 171 16 3 chr6 37029506 37029815 -145385427 + L1M2 LINE L1 5409 5721 -591 * 1633 143 0 123 chr6 37029828 37029972 -145385270 + AluJo SINE Alu 1 80 -232 2152 125 0 0 chr6 37029972 37030261 -145384981 - AluSx SINE Alu -9 303 15 1633 143 0 123 chr6 37030261 37030458 -145384784 + AluJo SINE Alu 80 300 -12 3136 163 54 12 chr6 37030465 37031145 -145384097 - L1MB4 LINE L1 0 6678 5772 534 70 0 0 chr6 37031149 37031220 -145384022 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1202 104 0 25 chr6 37031225 37031388 -145383854 - AluSp SINE Alu -30 283 125 339 109 0 0 chr6 37031392 37031447 -145383795 - L1MB4 LINE L1 -883 5761 5707 * 351 176 19 102 chr6 37031426 37031534 -145383708 - L1M4 LINE L1 -4968 1574 1476 1154 176 7 26 chr6 37031547 37031819 -145383423 - L1MB4 LINE L1 -941 5703 5437 * 1888 188 65 2 chr6 37031805 37032252 -145382990 - L1MB4 LINE L1 -4606 2040 1566 7897 20 0 6 chr6 37032252 37033372 -145381870 - L1PA3 LINE L1 0 6155 5041 11002 33 5 116 chr6 37033377 37034935 -145380307 - SVA Other Other 0 1386 2 263 195 0 32 chr6 37034944 37035067 -145380175 + GA-rich Low_complexity Low_complexity 3 121 0 456 203 7 22 chr6 37035068 37035206 -145380036 - L1MB4 LINE L1 -4963 1579 1444 194 0 0 37 chr6 37035207 37035234 -145380008 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 622 200 64 0 chr6 37035234 37035359 -145379883 - AluJo/FRAM SINE Alu -1 311 179 1263 167 5 0 chr6 37035359 37035557 -145379685 + AluJb SINE Alu 109 307 -5 1395 103 0 0 chr6 37035593 37035767 -145379475 - AluSq SINE Alu -20 293 120 1188 163 5 15 chr6 37035777 37035979 -145379263 - AluSg/x SINE Alu 0 312 113 1490 102 0 15 chr6 37035979 37036184 -145379058 - AluSx SINE Alu -110 202 1 429 297 14 0 chr6 37036186 37036347 -145378895 - L1MC5 LINE L1 -1133 6909 6668 297 333 86 27 chr6 37036449 37036519 -145378723 + MIR SINE MIR 66 130 -132 2058 226 42 22 chr6 37036519 37037069 -145378173 - MER34B LTR ERV1 0 565 5 297 333 86 27 chr6 37037069 37037184 -145378058 + MIR SINE MIR 130 262 0 2382 82 0 3 chr6 37037554 37037848 -145377394 - AluSc SINE Alu -16 293 1 221 310 121 9 chr6 37039342 37039458 -145375784 + MIR SINE MIR 133 261 -1 1997 161 3 7 chr6 37039810 37040114 -145375128 - AluJo SINE Alu -9 303 1 1959 161 73 3 chr6 37040294 37040635 -145374607 - MLT1A1 LTR MaLR 0 365 1 2231 109 0 0 chr6 37040641 37040958 -145374284 - AluSx SINE Alu 0 317 1 365 271 14 129 chr6 37041357 37041452 -145373790 - L1M4 LINE L1 -3239 2907 2847 2480 86 0 13 chr6 37041452 37041765 -145373477 - AluSc SINE Alu 0 309 1 365 271 14 129 chr6 37041765 37041879 -145373363 - L1M4 LINE L1 -3299 2847 2722 240 239 0 0 chr6 37042158 37042204 -145373038 + MIR SINE MIR 17 62 -200 675 268 29 83 chr6 37042204 37042625 -145372617 - MLT1J LTR MaLR -3 508 111 267 128 0 0 chr6 37042724 37042763 -145372479 + MIR SINE MIR 70 108 -154 188 256 333 34 chr6 37044094 37044211 -145371031 - MIR3 SINE MIR -27 181 30 233 234 31 0 chr6 37044659 37044723 -145370519 + (CA)n Simple_repeat Simple_repeat 1 66 0 3013 183 50 44 chr6 37044771 37045493 -145369749 + MER21B LTR ERV1 1 726 -137 1763 193 37 82 chr6 37045493 37045817 -145369425 - MER49 LTR ERV1 0 903 566 1536 165 27 0 chr6 37045817 37046078 -145369164 - AluJo SINE Alu -11 301 34 1763 193 37 82 chr6 37046078 37046416 -145368826 - MER49 LTR ERV1 -337 566 1 268 246 109 58 chr6 37046560 37046698 -145368544 + MLT1J LTR MaLR 5 149 -393 800 208 160 73 chr6 37047235 37047548 -145367694 - MLT1J LTR MaLR -152 359 20 423 244 87 9 chr6 37048594 37048709 -145366533 - MIR SINE MIR -116 146 23 2359 104 3 3 chr6 37048887 37049194 -145366048 + AluSq SINE Alu 1 307 -6 361 278 16 48 chr6 37049246 37049372 -145365870 + L2 LINE L2 2915 3036 -236 627 204 53 13 chr6 37049373 37049525 -145365717 + L1ME LINE L1 5540 5697 -469 * 2705 181 75 6 chr6 37049517 37050044 -145365198 - L1M4 LINE L1 -374 5804 5315 2178 125 3 49 chr6 37050044 37050371 -145364871 - AluSx SINE Alu 0 312 1 2705 181 75 6 chr6 37050371 37050837 -145364405 - L1M4 LINE L1 -863 5315 4747 722 312 93 14 chr6 37050889 37051242 -145364000 - MER90 LTR ERV1 -2 573 193 245 309 49 0 chr6 37051508 37051589 -145363653 + MIR3 SINE MIR 114 198 -10 360 0 0 0 chr6 37052438 37052478 -145362764 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr6 37052479 37052499 -145362743 + (GA)n Simple_repeat Simple_repeat 1 20 0 440 229 165 58 chr6 37054010 37054198 -145361044 - MER63A DNA MER1_type 0 210 3 564 207 73 33 chr6 37055034 37055184 -145360058 - MLT1J LTR MaLR -163 348 193 2172 116 3 0 chr6 37055895 37056205 -145359037 - AluSx SINE Alu -1 311 1 2302 140 93 20 chr6 37056900 37057299 -145357943 - MSTC LTR MaLR 0 428 1 426 319 26 44 chr6 37058045 37058271 -145356971 + L2 LINE L2 3092 3313 0 198 179 0 0 chr6 37059447 37059503 -145355739 + CT-rich Low_complexity Low_complexity 1 56 0 200 341 0 67 chr6 37059814 37059949 -145355293 + L2 LINE L2 2967 3092 -180 333 190 254 14 chr6 37060312 37060454 -145354788 + MLT1J LTR MaLR 236 411 -100 7386 87 8 21 chr6 37062084 37063156 -145352086 + MER11C LTR ERVK 1 1057 -14 1809 188 108 22 chr6 37064561 37064977 -145350265 - MER66A LTR ERV1 0 478 27 584 280 107 48 chr6 37066534 37066870 -145348372 - L2 LINE L2 0 3313 2958 240 35 0 0 chr6 37070117 37070146 -145345096 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 660 276 81 18 chr6 37071185 37071571 -145343671 - L1ME3A LINE L1 -1 6161 5718 288 351 84 28 chr6 37072270 37072555 -145342687 + L2 LINE L2 1860 2160 -1154 232 308 56 0 chr6 37073169 37073276 -145341966 - LTR33 LTR ERVL -237 284 172 371 105 0 0 chr6 37076817 37076874 -145338368 + L2 LINE L2 3257 3313 0 302 338 117 37 chr6 37078101 37078453 -145336789 - L1ME4a LINE L1 -194 5927 5548 356 289 175 6 chr6 37078941 37079107 -145336135 - L2 LINE L2 0 3313 3120 222 316 29 52 chr6 37084763 37084899 -145330343 - L2 LINE L2 -7 3306 3174 922 150 41 77 chr6 37084916 37085136 -145330106 + REP3 LTR ERV 26 237 -325 191 154 0 19 chr6 37086355 37086407 -145328835 + C-rich Low_complexity Low_complexity 3 53 0 5850 68 17 11 chr6 37088358 37089119 -145326123 - MER4E LTR ERV1 0 766 1 187 357 12 24 chr6 37089797 37089881 -145325361 + L2 LINE L2 3144 3226 -46 318 203 0 0 chr6 37091328 37091387 -145323855 - MIR3 SINE MIR -41 167 109 549 335 45 0 chr6 37092042 37092218 -145323024 - MIR3 SINE MIR -11 197 14 1181 130 0 0 chr6 37093060 37093229 -145322013 - AluSc SINE Alu -13 296 128 236 294 160 17 chr6 37094036 37094155 -145321087 + MIR3 SINE MIR 2 137 -71 2772 150 14 0 chr6 37095346 37095767 -145319475 - MER1A DNA MER1_type -102 427 1 2178 89 0 0 chr6 37096486 37096768 -145318474 + AluSx SINE Alu 1 282 -30 297 68 0 0 chr6 37096768 37096812 -145318430 + (CTAAA)n Simple_repeat Simple_repeat 3 46 0 867 88 0 16 chr6 37097456 37097581 -145317661 - AluSg/x SINE Alu -14 296 174 4772 42 24 2 chr6 37098321 37098899 -145316343 - LTR10C LTR ERV1 0 591 1 203 120 13 67 chr6 37099119 37099194 -145316048 + (GGGGA)n Simple_repeat Simple_repeat 4 74 0 1477 175 39 111 chr6 37099226 37099711 -145315531 - LTR7 LTR ERV1 0 450 1 228 313 172 30 chr6 37100010 37100144 -145315098 + MIR3 SINE MIR 36 188 -20 265 330 0 22 chr6 37103333 37103424 -145311818 - L2 LINE L2 -1 3312 3224 393 86 0 0 chr6 37104476 37104534 -145310708 + (CA)n Simple_repeat Simple_repeat 2 59 0 189 0 0 0 chr6 37104658 37104679 -145310563 + (CA)n Simple_repeat Simple_repeat 2 22 0 241 250 167 0 chr6 37105320 37105392 -145309850 + MIR SINE MIR 84 167 -95 4947 82 22 1 chr6 37105428 37106075 -145309167 - PABL_A LTR ERV1 0 660 1 369 280 46 46 chr6 37107634 37107809 -145307433 - MIR3 SINE MIR -2 206 32 213 211 0 19 chr6 37108468 37108520 -145306722 + G-rich Low_complexity Low_complexity 4 54 0 181 119 48 0 chr6 37109360 37109402 -145305840 + CT-rich Low_complexity Low_complexity 4 47 0 186 133 0 0 chr6 37110228 37110258 -145304984 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 543 167 0 0 chr6 37110684 37110774 -145304468 - AluJ/FRAM SINE Alu -6 306 217 * 636 169 102 0 chr6 37110772 37110890 -145304352 - AluJo/FLAM SINE Alu -182 130 1 2321 84 0 7 chr6 37111279 37111587 -145303655 - AluSg SINE Alu 0 310 5 314 238 0 0 chr6 37111910 37111990 -145303252 + LTR67 LTR ERVL 476 555 -2 194 244 0 0 chr6 37112013 37112054 -145303188 - MIR SINE MIR -159 103 63 2111 117 36 6 chr6 37112901 37113260 -145301982 + THE1C LTR MaLR 6 375 0 257 273 36 57 chr6 37113624 37113818 -145301424 - MER112 DNA MER1_type -32 228 39 182 193 18 0 chr6 37114027 37114084 -145301158 + (CA)n Simple_repeat Simple_repeat 2 59 0 3783 184 160 59 chr6 37114137 37115064 -145300178 - LTR28 LTR ERV1 0 1020 1 335 244 0 6 chr6 37115068 37115248 -145299994 + (CA)n Simple_repeat Simple_repeat 1 179 0 235 216 0 0 chr6 37115260 37115311 -145299931 + (CA)n Simple_repeat Simple_repeat 1 51 0 237 365 21 7 chr6 37116648 37116793 -145298449 + MLT1K LTR MaLR 134 280 -308 383 250 69 62 chr6 37116974 37117118 -145298124 - MIR SINE MIR -10 252 108 261 316 40 46 chr6 37117911 37118085 -145297157 + LTR67 LTR ERVL 122 294 -263 252 323 39 8 chr6 37118235 37118365 -145296877 + LTR67 LTR ERVL 383 516 -41 334 295 66 24 chr6 37118681 37118847 -145296395 - LTR67 LTR ERVL -11 546 374 371 300 39 8 chr6 37119332 37119462 -145295780 - LTR67 LTR ERVL -35 522 389 273 344 70 25 chr6 37119619 37119776 -145295466 - LTR67 LTR ERVL -390 167 4 206 264 16 99 chr6 37119857 37119978 -145295264 + L2 LINE L2 3161 3271 -1 504 335 76 10 chr6 37120210 37120407 -145294835 + MIR SINE MIR 24 233 -29 474 279 145 12 chr6 37120438 37120610 -145294632 - MIR SINE MIR -39 223 29 273 279 25 0 chr6 37120819 37120898 -145294344 - L2 LINE L2 -182 3090 3010 641 221 19 77 chr6 37120910 37121118 -145294124 - L1ME1 LINE L1 -5 6161 5966 21 57 0 0 chr6 37121185 37121220 -145294022 + AT_rich Low_complexity Low_complexity 1 35 0 187 323 192 0 chr6 37121804 37121903 -145293339 + MIR3 SINE MIR 67 184 -24 204 301 41 0 chr6 37123569 37123642 -145291600 + MIR3 SINE MIR 104 179 -29 207 0 0 0 chr6 37125184 37125207 -145290035 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2104 99 0 3 chr6 37125209 37125492 -145289750 - AluSx SINE Alu -30 282 1 626 201 67 27 chr6 37125493 37125642 -145289600 - MIR SINE MIR -97 165 11 570 304 110 13 chr6 37125656 37125883 -145289359 - MIR SINE MIR -1 261 13 2090 127 10 16 chr6 37126576 37126890 -145288352 - AluSx SINE Alu 0 312 1 270 258 0 0 chr6 37127930 37127996 -145287246 - L2 LINE L2 -330 2983 2918 287 327 91 0 chr6 37129046 37129156 -145286086 - MIR3 SINE MIR -80 128 9 295 282 12 12 chr6 37129491 37129576 -145285666 - MIR SINE MIR -149 113 29 309 242 178 37 chr6 37129635 37129836 -145285406 - MIR3 SINE MIR -3 205 3 236 365 56 47 chr6 37129986 37130200 -145285042 + MIR SINE MIR 41 256 -6 215 235 103 0 chr6 37131102 37131170 -145284072 - L2 LINE L2 -48 3224 3150 523 244 47 0 chr6 37131342 37131469 -145283773 - MIR3 SINE MIR -25 183 51 1978 93 97 4 chr6 37131848 37132126 -145283116 - AluSx SINE Alu -8 304 1 497 302 13 25 chr6 37132134 37132293 -145282949 + MER5A DNA MER1_type 5 161 -28 3112 236 35 8 chr6 37132320 37133318 -145281924 - L1ME3A LINE L1 -24 6146 5121 381 186 172 48 chr6 37134143 37134288 -145280954 + MER103 DNA DNA 3 165 -1 229 281 0 62 chr6 37134682 37134778 -145280464 + GA-rich Low_complexity Low_complexity 5 94 0 473 232 77 41 chr6 37134778 37134885 -145280357 - LTR33 LTR ERVL -17 504 385 2117 129 3 0 chr6 37134885 37135187 -145280055 + AluSq SINE Alu 1 303 -10 473 232 77 41 chr6 37135187 37135273 -145279969 - LTR33 LTR ERVL -136 385 304 2191 150 36 22 chr6 37135277 37135636 -145279606 - THE1B LTR MaLR 0 364 1 295 186 0 0 chr6 37135714 37135773 -145279469 - LTR33 LTR ERVL -346 175 117 299 269 21 21 chr6 37137099 37137192 -145278050 - L2 LINE L2 -174 3098 3006 217 220 85 0 chr6 37137349 37137408 -145277834 - L2 LINE L2 -217 3055 2992 212 329 66 0 chr6 37138424 37138500 -145276742 - MIR SINE MIR -123 139 59 1127 223 129 59 chr6 37141723 37142195 -145273047 + MLT1D LTR MaLR 1 505 0 761 259 35 24 chr6 37142206 37142461 -145272781 + MLT1K LTR MaLR 330 587 -1 238 192 103 26 chr6 37142468 37142546 -145272696 + L1ME LINE L1 5581 5664 -457 307 281 246 0 chr6 37142548 37142662 -145272580 + L1ME LINE L1 5688 5829 -292 482 51 0 0 chr6 37142792 37142851 -145272391 - Alu SINE Alu -19 290 232 608 348 98 66 chr6 37142911 37143407 -145271835 - L1MC4a LINE L1 -1744 6064 5535 1968 87 11 35 chr6 37143407 37143693 -145271549 + AluSc SINE Alu 1 279 -30 608 348 98 66 chr6 37143693 37143940 -145271302 - L1MC4a LINE L1 -2273 5535 5297 336 265 43 17 chr6 37144130 37144247 -145270995 + MLT1K LTR MaLR 180 299 -289 352 268 138 0 chr6 37145177 37145315 -145269927 - MIR3 SINE MIR -22 186 30 203 343 110 20 chr6 37145504 37145650 -145269592 - L2 LINE L2 -86 3186 3028 10055 25 3 171 chr6 37145844 37147509 -145267733 + SVA Other Other 1 1386 0 260 333 0 0 chr6 37147591 37147672 -145267570 + (CA)n Simple_repeat Simple_repeat 1 81 0 203 0 37 0 chr6 37147706 37147733 -145267509 + (CTCTG)n Simple_repeat Simple_repeat 5 32 0 535 300 99 0 chr6 37148079 37148332 -145266910 - LTR16A LTR ERVL -7 443 166 646 229 35 6 chr6 37149102 37149272 -145265970 + MER104 DNA Tc2 1 175 -5 846 304 162 8 chr6 37150917 37151584 -145263658 - L2 LINE L2 -71 3242 2484 877 237 42 31 chr6 37151585 37152073 -145263169 - MLT1H1 LTR MaLR -2 593 1 228 280 13 13 chr6 37152079 37152154 -145263088 - L2 LINE L2 -835 2479 2405 262 286 86 0 chr6 37152192 37152297 -145262945 + MIR3 SINE MIR 81 194 -14 248 220 0 0 chr6 37152927 37152977 -145262265 - MER5A DNA MER1_type -114 75 26 341 191 29 0 chr6 37153179 37153247 -145261995 + MIR SINE MIR 80 149 -113 317 262 13 67 chr6 37153258 37153407 -145261835 + G-rich Low_complexity Low_complexity 2 142 0 471 35 0 0 chr6 37153697 37153754 -145261488 + (TTA)n Simple_repeat Simple_repeat 2 58 0 325 326 45 15 chr6 37154493 37154625 -145260617 + L2 LINE L2 2933 3068 -204 710 240 15 31 chr6 37154878 37155074 -145260168 + L2 LINE L2 3109 3301 -12 186 274 0 48 chr6 37155375 37155437 -145259805 - MIR SINE MIR -93 115 57 298 210 319 0 chr6 37155652 37155771 -145259471 - MER5A DNA MER1_type -32 157 1 203 208 21 21 chr6 37155975 37156023 -145259219 - L2 LINE L2 0 3313 3266 198 297 54 27 chr6 37156996 37157070 -145258172 - L3b LINE CR1 -4 1579 1504 296 274 57 47 chr6 37157171 37157209 -145258033 - MIR SINE MIR -60 148 112 2586 156 2 5 chr6 37157209 37157606 -145257636 - MSTD LTR MaLR 0 396 1 296 274 57 47 chr6 37157606 37157673 -145257569 - MIR SINE MIR -96 112 42 222 245 10 59 chr6 37158312 37158414 -145256828 + CT-rich Low_complexity Low_complexity 1 97 0 225 0 0 0 chr6 37159338 37159363 -145255879 + (CA)n Simple_repeat Simple_repeat 2 26 0 582 269 40 24 chr6 37159384 37159633 -145255609 - L1MC5 LINE L1 -95 7866 7614 271 318 47 68 chr6 37160181 37160373 -145254869 + L2 LINE L2 3022 3209 -63 190 339 17 0 chr6 37160532 37160591 -145254651 - L2 LINE L2 0 3272 3213 324 275 30 78 chr6 37160836 37161003 -145254239 - MIR SINE MIR -56 206 48 192 125 0 0 chr6 37162611 37162643 -145252599 + (A)n Simple_repeat Simple_repeat 1 32 0 2342 99 0 0 chr6 37162908 37163220 -145252022 + AluSx SINE Alu 1 312 0 671 252 104 94 chr6 37163301 37163789 -145251453 + LTR33A LTR ERVL 29 521 -2 258 316 13 53 chr6 37163791 37163943 -145251299 + L2 LINE L2 2327 2472 -842 28 0 0 0 chr6 37166324 37166352 -145248890 + GC_rich Low_complexity Low_complexity 1 28 0 8091 49 9 0 chr6 37168527 37169487 -145245755 + LTR5 LTR ERVK 1 969 0 368 354 13 6 chr6 37171357 37171515 -145243727 - L3 LINE CR1 -777 800 642 22 0 0 0 chr6 37172730 37172752 -145242490 + AT_rich Low_complexity Low_complexity 1 22 0 648 242 79 6 chr6 37172755 37172920 -145242322 + MIR SINE MIR 29 205 -57 1013 211 106 3 chr6 37172965 37173249 -145241993 - MER58B DNA MER1_type -3 338 26 1631 173 20 7 chr6 37173432 37173727 -145241515 - AluJo SINE Alu -13 299 1 333 247 65 0 chr6 37174579 37174656 -145240586 + MIR SINE MIR 98 179 -83 2269 103 0 0 chr6 37175849 37176151 -145239091 + AluSg SINE Alu 9 310 0 225 296 144 8 chr6 37178089 37178214 -145237028 - MIR3 SINE MIR -30 178 37 578 227 23 0 chr6 37180606 37180734 -145234508 - L2 LINE L2 -257 3056 2926 2168 270 88 44 chr6 37181063 37182228 -145233014 - L2 LINE L2 0 3313 2093 204 256 139 0 chr6 37182222 37182308 -145232934 - MIR SINE MIR -77 131 34 * 288 276 31 51 chr6 37182619 37182717 -145232525 - MIR3 SINE MIR -3 205 110 888 230 46 65 chr6 37183053 37183272 -145231970 + MIR SINE MIR 7 222 -40 1910 19 0 0 chr6 37183272 37183487 -145231755 + AluY SINE Alu 85 299 -12 888 230 46 65 chr6 37183487 37183528 -145231714 + MIR SINE MIR 222 262 0 206 217 133 33 chr6 37184411 37184471 -145230771 - MIR SINE MIR -124 138 73 320 272 233 7 chr6 37184869 37185058 -145230184 - MIR SINE MIR 0 262 26 427 283 196 5 chr6 37189370 37189554 -145225688 - MIR SINE MIR -32 230 12 224 276 11 69 chr6 37189948 37190035 -145225207 - L2 LINE L2 0 3272 3191 261 0 0 0 chr6 37190084 37190113 -145225129 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr6 37190294 37190322 -145224920 + GC_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 37190543 37190573 -145224669 + GC_rich Low_complexity Low_complexity 1 30 0 373 280 70 57 chr6 37192358 37192515 -145222727 - MIR SINE MIR -63 145 6 558 227 182 0 chr6 37196277 37196431 -145218811 + MER5A DNA MER1_type 8 189 0 252 315 78 98 chr6 37196639 37196934 -145218308 - L2 LINE L2 -32 3240 2952 389 249 21 0 chr6 37198817 37198910 -145216332 - MIR3 SINE MIR -38 170 75 295 298 32 16 chr6 37203028 37203152 -145212090 - MLT1L LTR MaLR -324 291 166 498 344 21 27 chr6 37203546 37203732 -145211510 - MIR SINE MIR -2 260 76 1925 148 10 0 chr6 37203832 37204129 -145211113 + AluJo SINE Alu 1 300 -12 252 322 93 0 chr6 37204326 37204444 -145210798 + MIR SINE MIR 55 183 -79 243 0 0 0 chr6 37204449 37204476 -145210766 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 530 328 11 11 chr6 37204481 37204658 -145210584 - L2 LINE L2 -10 3303 3127 2221 114 0 0 chr6 37204717 37205016 -145210226 + AluSx SINE Alu 1 299 -13 2030 88 0 0 chr6 37205016 37205278 -145209964 + AluSg SINE Alu 40 301 -9 317 310 94 8 chr6 37208326 37208498 -145206744 + MIR SINE MIR 1 185 -65 210 216 56 89 chr6 37210020 37210121 -145205121 + MIR SINE MIR 27 124 -95 426 266 0 0 chr6 37210137 37210231 -145205011 + L2 LINE L2 3220 3313 0 1844 141 35 0 chr6 37210272 37210562 -145204680 - AluJb SINE Alu -12 300 1 232 309 40 60 chr6 37211601 37211750 -145203492 + MIR3 SINE MIR 15 160 -48 589 295 131 9 chr6 37211792 37212211 -145203031 + MLT1H1 LTR MaLR 2 556 -39 732 216 7 0 chr6 37212220 37212373 -145202869 - L1MD2 LINE L1 -14 6345 6192 372 43 0 0 chr6 37212414 37212460 -145202782 + (TG)n Simple_repeat Simple_repeat 1 46 0 226 200 22 0 chr6 37212471 37212537 -145202705 + MLT1F1 LTR MaLR 475 567 0 919 266 103 3 chr6 37213127 37213428 -145201814 + MLT1I LTR MaLR 53 383 -26 2304 69 7 0 chr6 37214141 37214430 -145200812 - AluY SINE Alu 0 311 21 180 111 0 0 chr6 37214490 37214517 -145200725 + (TG)n Simple_repeat Simple_repeat 1 27 0 545 279 0 21 chr6 37214614 37214754 -145200488 + L3 LINE CR1 685 821 -756 522 321 189 13 chr6 37215413 37215715 -145199527 + L3 LINE CR1 1221 1575 -2 489 308 137 9 chr6 37216619 37216846 -145198396 + MIR SINE MIR 6 261 -1 436 342 26 45 chr6 37216853 37217119 -145198123 + L3 LINE CR1 1301 1561 -16 2243 106 0 0 chr6 37218623 37218925 -145196317 + AluSc SINE Alu 3 304 -5 2244 97 0 31 chr6 37219545 37219865 -145195377 - AluY SINE Alu -1 310 1 957 277 143 48 chr6 37219897 37219917 -145195325 - HAL1 LINE L1 -5 2502 2485 1238 137 189 12 chr6 37219917 37220165 -145195077 + AluSg1 SINE Alu 1 292 -17 957 277 143 48 chr6 37220165 37220548 -145194694 - HAL1 LINE L1 -22 2485 2139 2157 123 3 0 chr6 37220548 37220858 -145194384 + AluSx SINE Alu 1 311 -1 957 277 143 48 chr6 37220858 37220912 -145194330 - HAL1 LINE L1 -368 2139 2091 1426 122 72 89 chr6 37220912 37221216 -145194026 - AluJb SINE Alu -13 299 1 957 277 143 48 chr6 37221216 37221500 -145193742 - HAL1 LINE L1 -416 2091 1689 349 286 57 64 chr6 37221617 37221757 -145193485 - HAL1 LINE L1 -2317 190 52 256 218 55 0 chr6 37221829 37221884 -145193358 + L2 LINE L2 3215 3272 0 327 247 24 35 chr6 37221975 37222060 -145193182 - HAL1 LINE L1 -319 2188 2105 458 250 33 17 chr6 37222602 37222722 -145192520 + MIR SINE MIR 46 167 -41 215 295 156 0 chr6 37222684 37222806 -145192436 + L2 LINE L2 2520 2660 -654 * 225 234 0 0 chr6 37222847 37222894 -145192348 + MER45 DNA AcHobo 1526 1572 -9 736 278 153 21 chr6 37222975 37223283 -145191959 + L2 LINE L2 2826 3209 -104 2063 123 3 0 chr6 37223283 37223604 -145191638 + AluSp SINE Alu 1 322 0 736 278 153 21 chr6 37223604 37223725 -145191517 + L2 LINE L2 3209 3313 0 252 157 39 0 chr6 37223887 37223938 -145191304 - MER53 DNA DNA -135 54 2 632 209 14 14 chr6 37224479 37224618 -145190624 + MIR SINE MIR 113 251 -11 197 336 48 10 chr6 37225211 37225315 -145189927 + MIR SINE MIR 35 142 -66 361 221 3 8 chr6 37225321 37225340 -145189902 + AluJ/FLAM SINE Alu 1 19 -283 2328 53 0 3 chr6 37225340 37225650 -145189592 + AluY SINE Alu 3 311 0 361 221 3 8 chr6 37225650 37225717 -145189525 + AluJ/FLAM SINE Alu 19 67 -235 424 321 78 12 chr6 37225826 37226069 -145189173 + L2 LINE L2 2843 3101 -171 1334 200 95 3 chr6 37226229 37226514 -145188728 + AluJb SINE Alu 1 311 -1 636 253 71 27 chr6 37226514 37226731 -145188511 - MIR SINE MIR -5 257 28 472 323 26 42 chr6 37226741 37226933 -145188309 + MIR3 SINE MIR 13 201 -7 466 276 0 0 chr6 37227735 37227840 -145187402 + MIR SINE MIR 119 223 -39 324 0 0 0 chr6 37227927 37227963 -145187279 + (CA)n Simple_repeat Simple_repeat 2 37 0 387 358 77 35 chr6 37228768 37229081 -145186161 - L2 LINE L2 0 3272 2947 538 280 123 23 chr6 37229090 37229351 -145185891 - L2 LINE L2 -530 2784 2498 429 297 0 0 chr6 37229609 37229710 -145185532 + MIR SINE MIR 123 223 -39 846 180 6 55 chr6 37230779 37230962 -145184280 - AluJb SINE Alu -4 308 135 220 196 59 0 chr6 37232357 37232408 -145182834 + CT-rich Low_complexity Low_complexity 1 54 0 215 333 83 9 chr6 37233375 37233483 -145181759 - MER5B DNA MER1_type -25 153 38 315 289 28 78 chr6 37233483 37233625 -145181617 - L1MC5 LINE L1 -32 7929 7795 279 192 0 0 chr6 37234912 37234985 -145180257 + (CA)n Simple_repeat Simple_repeat 1 73 0 280 331 15 53 chr6 37237194 37237327 -145177915 + MIR SINE MIR 14 141 -121 2457 60 3 16 chr6 37237460 37237777 -145177465 - AluSp SINE Alu 0 313 1 2213 113 0 13 chr6 37237777 37238087 -145177155 - AluSx SINE Alu -4 308 2 451 206 29 0 chr6 37238144 37238246 -145176996 - MLT1I LTR MaLR 0 409 305 316 239 110 9 chr6 37240599 37240708 -145174534 + MIR SINE MIR 23 142 -66 887 228 42 33 chr6 37240734 37240975 -145174267 + MIR SINE MIR 9 251 -11 195 369 117 0 chr6 37242320 37242431 -145172811 + MIR SINE MIR 20 143 -65 536 293 62 43 chr6 37242494 37242702 -145172540 - MIR SINE MIR 0 262 51 2242 74 0 3 chr6 37242742 37243045 -145172197 + AluSx SINE Alu 1 302 0 22 35 0 0 chr6 37243223 37243252 -145171990 + AT_rich Low_complexity Low_complexity 1 29 0 1921 143 10 0 chr6 37243283 37243576 -145171666 + AluJb SINE Alu 1 296 -16 195 286 18 0 chr6 37245141 37245197 -145170045 + MER5A DNA MER1_type 61 117 -72 2487 74 0 0 chr6 37245217 37245527 -145169715 - AluSp SINE Alu -3 310 1 761 282 24 5 chr6 37246668 37246881 -145168361 - MIR SINE MIR -32 230 14 188 211 0 0 chr6 37246961 37246999 -145168243 - MIR SINE MIR -93 115 78 216 328 0 0 chr6 37248676 37248734 -145166508 + MIR SINE MIR 64 121 -87 440 210 26 72 chr6 37249359 37249436 -145165806 - LTR33 LTR ERVL -4 517 438 2324 97 0 0 chr6 37249436 37249746 -145165496 + AluSg SINE Alu 1 310 0 440 210 26 72 chr6 37249746 37249863 -145165379 - LTR33 LTR ERVL -83 438 332 664 215 47 0 chr6 37249892 37250064 -145165178 - LTR33 LTR ERVL -308 213 34 191 302 0 0 chr6 37252023 37252066 -145163176 - MIR SINE MIR -112 150 108 2320 67 40 0 chr6 37254189 37254488 -145160754 - AluY SINE Alu 0 311 1 181 0 33 33 chr6 37258104 37258134 -145157108 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 249 139 0 0 chr6 37259500 37259543 -145155699 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 207 270 63 0 chr6 37259543 37259606 -145155636 - L2 LINE L2 -1 3271 3205 264 77 0 0 chr6 37259653 37259692 -145155550 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 184 290 65 11 chr6 37259918 37260011 -145155231 - L2 LINE L2 -275 3038 2941 192 279 0 0 chr6 37260177 37260220 -145155022 + L2 LINE L2 2600 2642 -672 242 224 35 0 chr6 37260317 37260375 -145154867 - MLT1J2 LTR MaLR -1 449 390 227 118 0 0 chr6 37260406 37260440 -145154802 - MLT1J1 LTR MaLR -127 319 286 303 262 47 28 chr6 37260530 37260637 -145154605 - MLT1J1 LTR MaLR -314 132 24 2188 116 3 0 chr6 37261504 37261807 -145153435 + AluSx SINE Alu 4 307 -5 220 204 296 10 chr6 37262022 37262120 -145153122 - L2 LINE L2 -165 3148 3023 966 148 79 30 chr6 37263084 37263287 -145151955 + MIR SINE MIR 13 225 -37 2042 131 3 19 chr6 37263287 37263601 -145151641 + AluJo SINE Alu 1 309 -3 263 304 14 0 chr6 37263651 37263720 -145151522 - MIR SINE MIR -105 157 88 229 222 203 34 chr6 37263723 37263930 -145151312 + L2 LINE L2 2923 3164 -149 852 162 6 52 chr6 37264045 37264156 -145151086 + MER45A DNA AcHobo 1 103 -1478 1487 182 43 7 chr6 37264156 37264436 -145150806 - AluJo SINE Alu -22 290 1 852 162 6 52 chr6 37264436 37264497 -145150745 + MER45A DNA AcHobo 103 165 -13 324 70 0 0 chr6 37264527 37264570 -145150672 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 198 306 69 0 chr6 37264934 37265006 -145150236 - L2 LINE L2 -27 3245 3169 4659 132 37 33 chr6 37265706 37266652 -145148590 + L1MB3 LINE L1 5176 6117 -66 1860 93 43 25 chr6 37266652 37266954 -145148288 + AluSq SINE Alu 1 307 0 915 106 16 0 chr6 37266961 37267084 -145148158 + FLAM_C SINE Alu 1 125 -8 4659 132 37 33 chr6 37267084 37267132 -145148110 + L1MB3 LINE L1 6122 6181 -2 518 223 108 19 chr6 37268077 37268134 -145147108 + MER5B DNA MER1_type 6 57 -121 791 108 46 31 chr6 37268134 37268264 -145146978 + FLAM_C SINE Alu 1 132 -1 518 223 108 19 chr6 37268264 37268363 -145146879 + MER5B DNA MER1_type 57 176 -2 1582 284 126 15 chr6 37268620 37269614 -145145628 - L2 LINE L2 0 3313 2217 267 336 8 49 chr6 37269942 37270064 -145145178 + L2 LINE L2 3156 3272 0 416 318 67 22 chr6 37270956 37271135 -145144107 - MIR SINE MIR -55 207 21 2433 70 0 0 chr6 37274117 37274417 -145140825 + AluY SINE Alu 1 300 -11 257 311 107 8 chr6 37275310 37275432 -145139810 - MIR SINE MIR -2 260 127 1350 177 113 11 chr6 37275438 37275800 -145139442 + L1MC4 LINE L1 7545 7943 -99 315 308 13 0 chr6 37275828 37275906 -145139336 - MIR SINE MIR -149 113 35 1644 91 5 5 chr6 37276017 37276237 -145139005 + AluSg SINE Alu 34 253 -57 2170 117 0 3 chr6 37277139 37277438 -145137804 + AluSx SINE Alu 1 298 -14 402 169 24 0 chr6 37278626 37278709 -145136533 + MER5A DNA MER1_type 12 96 -93 1223 139 22 45 chr6 37280614 37280837 -145134405 + MER20 DNA MER1_type 2 219 0 429 280 23 15 chr6 37281048 37281180 -145134062 - MIR SINE MIR -108 154 22 441 244 43 0 chr6 37281196 37281311 -145133931 + MIR SINE MIR 33 152 -110 316 234 39 0 chr6 37282628 37282705 -145132537 - Charlie4 DNA MER1_type -64 1897 1818 188 275 325 6 chr6 37287887 37288047 -145127195 + L2 LINE L2 3012 3222 -50 1025 248 40 4 chr6 37288782 37289032 -145126210 - MIR SINE MIR 0 262 4 454 302 101 0 chr6 37289654 37289793 -145125449 - MER91B DNA MER1_type -37 153 1 207 222 20 78 chr6 37292757 37292910 -145122332 + (CA)n Simple_repeat Simple_repeat 2 145 0 355 225 90 27 chr6 37295593 37295704 -145119538 + MIR SINE MIR 36 153 -109 261 133 0 0 chr6 37297084 37297129 -145118113 - MER91B DNA MER1_type -151 45 1 2122 112 0 3 chr6 37297265 37297560 -145117682 + AluSx SINE Alu 1 294 -18 885 282 107 25 chr6 37297835 37298229 -145117013 - ERVL LTR ERVL -3887 1877 1452 436 151 43 11 chr6 37298231 37298324 -145116918 + MLT1F1 LTR MaLR 472 567 0 2464 63 3 0 chr6 37298328 37298631 -145116611 + AluY SINE Alu 1 304 -7 226 261 23 0 chr6 37298639 37298727 -145116515 - L1MC4a LINE L1 -1807 6001 5912 193 250 0 0 chr6 37299800 37299844 -145115398 + L2 LINE L2 3003 3046 -226 305 248 110 55 chr6 37300143 37300252 -145114990 - L2 LINE L2 -5 3308 3194 189 290 97 0 chr6 37300258 37300320 -145114922 + L2 LINE L2 3203 3270 -2 193 325 34 26 chr6 37302764 37302881 -145112361 + L2 LINE L2 2947 3064 -208 423 310 93 31 chr6 37302994 37303220 -145112022 + MIR SINE MIR 4 243 -19 2203 112 0 13 chr6 37304004 37304307 -145110935 - AluSx SINE Alu -13 299 1 1353 261 74 5 chr6 37304350 37304771 -145110471 + Charlie4a DNA MER1_type 17 466 -42 498 287 48 0 chr6 37305430 37305619 -145109623 + MIR3 SINE MIR 15 212 -50 306 203 45 135 chr6 37306611 37306744 -145108498 + MIR3 SINE MIR 39 159 -49 * 656 188 8 0 chr6 37306741 37306858 -145108384 - MER5A DNA MER1_type -11 178 61 746 143 76 0 chr6 37306891 37307010 -145108232 - FLAM_C SINE Alu -5 128 1 341 164 134 0 chr6 37307010 37307077 -145108165 - MER5A DNA MER1_type -113 76 1 197 254 70 0 chr6 37307568 37307639 -145107603 - L2 LINE L2 -223 3049 2974 214 311 0 29 chr6 37309370 37309473 -145105769 + G-rich Low_complexity Low_complexity 2 101 0 836 258 24 0 chr6 37309593 37309802 -145105440 + MIR SINE MIR 28 241 -21 1117 141 0 0 chr6 37309839 37310002 -145105240 - AluSg/x SINE Alu -19 293 131 195 341 23 11 chr6 37310584 37310672 -145104570 + L2 LINE L2 3153 3241 -31 429 265 24 77 chr6 37311813 37311895 -145103347 + L2 LINE L2 3152 3222 -91 537 185 311 0 chr6 37311895 37312030 -145103212 - MER45A DNA AcHobo -1 177 1 429 265 24 77 chr6 37312030 37312117 -145103125 + L2 LINE L2 3222 3312 -1 276 290 187 36 chr6 37312747 37313137 -145102105 + L1MC4 LINE L1 7594 8042 0 674 289 65 9 chr6 37313154 37313386 -145101856 + MIR SINE MIR 18 262 0 464 276 21 57 chr6 37313870 37314062 -145101180 + MIR SINE MIR 8 192 -70 213 135 27 0 chr6 37314430 37314467 -145100775 + (CCCCAG)n Simple_repeat Simple_repeat 5 42 0 338 215 13 0 chr6 37314983 37315062 -145100180 + MER46C DNA MER2_type 258 337 -1 253 343 110 7 chr6 37315062 37315208 -145100034 - MIR SINE MIR -61 201 41 346 306 8 40 chr6 37315220 37315344 -145099898 - L3 LINE CR1 -7 1570 1451 383 155 28 0 chr6 37316195 37316266 -145098976 + L2 LINE L2 3229 3301 -12 500 196 53 38 chr6 37317415 37317427 -145097815 + MIR SINE MIR 52 62 -200 2018 124 19 3 chr6 37317427 37317734 -145097508 - AluSq SINE Alu -1 312 1 500 196 53 38 chr6 37317734 37317854 -145097388 + MIR SINE MIR 62 186 -76 756 275 69 0 chr6 37317875 37318093 -145097149 - MIR SINE MIR -17 245 13 2098 98 0 7 chr6 37318476 37318800 -145096442 - AluSx SINE Alu 0 322 1 933 223 28 9 chr6 37321008 37321219 -145094023 - MIR SINE MIR -43 219 5 276 130 0 0 chr6 37321585 37321631 -145093611 + (CA)n Simple_repeat Simple_repeat 1 46 0 269 275 23 76 chr6 37322872 37323003 -145092239 + MIR3 SINE MIR 37 160 -48 443 283 241 0 chr6 37323060 37323205 -145092037 + MER91A DNA MER1_type 9 188 -8 870 142 0 15 chr6 37323297 37323431 -145091811 - AluJo SINE Alu -176 136 5 922 197 121 76 chr6 37323992 37324372 -145090870 + LTR16A1 LTR ERVL 61 457 0 262 270 0 0 chr6 37324591 37324654 -145090588 + L3 LINE CR1 1396 1458 -119 2275 116 0 0 chr6 37325149 37325460 -145089782 - AluSx SINE Alu 0 312 2 676 295 78 0 chr6 37325727 37325985 -145089257 + MER20B DNA MER1_type 155 432 -351 968 125 0 0 chr6 37326032 37326168 -145089074 + FLAM_C SINE Alu 1 136 -7 40 0 0 20 chr6 37326205 37326239 -145089003 + AT_rich Low_complexity Low_complexity 1 35 -15 1638 188 3 3 chr6 37326239 37326531 -145088711 + AluJo SINE Alu 1 292 -20 40 0 0 20 chr6 37326531 37326547 -145088695 + AT_rich Low_complexity Low_complexity 35 50 0 2269 89 0 16 chr6 37326683 37326987 -145088255 + AluSg SINE Alu 1 299 -11 208 298 61 61 chr6 37326997 37327111 -145088131 + L2 LINE L2 3145 3258 -55 232 364 34 0 chr6 37328017 37328135 -145087107 + L1MEd LINE L1 939 1060 -5470 2559 43 0 3 chr6 37328146 37328451 -145086791 - AluY SINE Alu -6 305 2 638 317 102 36 chr6 37328459 37328822 -145086420 + L1MEd LINE L1 1021 1407 -5133 271 301 97 0 chr6 37329569 37329662 -145085580 - MER5B DNA MER1_type -38 140 39 2211 113 3 0 chr6 37329922 37330231 -145085011 + AluSp SINE Alu 1 310 -3 2174 94 0 20 chr6 37330244 37330542 -145084700 + AluSg1 SINE Alu 1 292 -17 1633 133 72 14 chr6 37330555 37330834 -145084408 + AluJb SINE Alu 3 297 -15 455 246 107 16 chr6 37330971 37331081 -145084161 + HAL1 LINE L1 2187 2286 -221 2147 139 0 0 chr6 37331081 37331390 -145083852 + AluJb SINE Alu 1 309 -3 455 246 107 16 chr6 37331390 37331466 -145083776 + HAL1 LINE L1 2286 2390 -117 303 266 77 121 chr6 37331467 37331646 -145083596 + L1MC4a LINE L1 5522 5707 -2101 2395 179 22 22 chr6 37331646 37332110 -145083132 + L1MB3 LINE L1 5718 6181 -2 303 266 77 121 chr6 37332110 37332122 -145083120 + L1MC4a LINE L1 5707 5718 -2090 1617 189 20 17 chr6 37332122 37332419 -145082823 + AluJb SINE Alu 2 299 -13 303 266 77 121 chr6 37332419 37332510 -145082732 + L1MC4a LINE L1 5718 5811 -1997 1948 153 3 0 chr6 37332510 37332811 -145082431 - AluJb SINE Alu -10 302 1 303 266 77 121 chr6 37332811 37333097 -145082145 + L1MC4a LINE L1 5811 6067 -1741 2320 108 0 0 chr6 37333311 37333616 -145081626 + AluSg SINE Alu 1 305 -5 613 219 21 3 chr6 37333626 37333787 -145081455 + L1ME3 LINE L1 5367 5513 -651 373 347 17 0 chr6 37333895 37334071 -145081171 + L1ME3 LINE L1 5691 5869 -293 2234 98 0 9 chr6 37334081 37334396 -145080846 - AluSx SINE Alu 0 312 1 2236 113 0 0 chr6 37334617 37334918 -145080324 + AluSx SINE Alu 1 301 -11 966 98 0 0 chr6 37335158 37335291 -145079951 + AluSq/x SINE Alu 1 133 -179 2022 146 3 0 chr6 37335368 37335670 -145079572 - AluSg SINE Alu -7 303 1 180 77 0 0 chr6 37337155 37337181 -145078061 + (TC)n Simple_repeat Simple_repeat 2 27 0 1104 288 94 6 chr6 37337481 37337950 -145077292 - L2 LINE L2 0 3313 2804 246 320 26 0 chr6 37338575 37338653 -145076589 - MIR3 SINE MIR -20 188 109 247 308 8 17 chr6 37339470 37339587 -145075655 + GA-rich Low_complexity Low_complexity 1 116 0 611 196 7 0 chr6 37339761 37339909 -145075333 + (TCCA)n Simple_repeat Simple_repeat 2 150 0 275 316 54 36 chr6 37339956 37340124 -145075118 - MIR SINE MIR -16 246 76 2313 101 0 0 chr6 37340176 37340482 -145074760 - AluSg SINE Alu -4 306 1 379 169 24 24 chr6 37340892 37340975 -145074267 + MER21B LTR ERV1 3 85 -778 595 197 109 49 chr6 37341094 37341277 -145073965 + MER21B LTR ERV1 95 288 -575 2116 104 0 0 chr6 37341281 37341590 -145073652 + AluSg SINE Alu 5 313 0 1003 149 0 6 chr6 37341616 37341631 -145073611 + AluSg/x SINE Alu 120 134 -178 1978 89 3 70 chr6 37341631 37341946 -145073296 + AluSx SINE Alu 1 294 -18 1003 149 0 6 chr6 37341946 37342091 -145073151 + AluSg/x SINE Alu 134 279 -33 189 74 0 0 chr6 37342092 37342119 -145073123 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1226 203 221 6 chr6 37342121 37342470 -145072772 + MER21B LTR ERV1 317 740 -123 293 286 314 0 chr6 37342496 37342636 -145072606 - MIR SINE MIR -56 206 23 2483 248 85 46 chr6 37342678 37343265 -145071977 + L2 LINE L2 2093 2656 -657 1993 109 0 48 chr6 37343265 37343576 -145071666 - AluSx SINE Alu -16 296 1 2483 248 85 46 chr6 37343576 37344172 -145071070 + L2 LINE L2 2656 3313 0 196 264 44 11 chr6 37344197 37344288 -145070954 - L2 LINE L2 -68 3245 3152 23 86 0 0 chr6 37345828 37345886 -145069356 + AT_rich Low_complexity Low_complexity 1 58 0 22 56 0 0 chr6 37346002 37346038 -145069204 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr6 37346064 37346097 -145069145 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr6 37346378 37346399 -145068843 + GC_rich Low_complexity Low_complexity 1 21 0 377 238 42 95 chr6 37347684 37347873 -145067369 - MIR3 SINE MIR 0 208 30 4218 188 48 44 chr6 37347884 37348834 -145066408 + LTR13 LTR ERVK 1 954 0 345 348 50 25 chr6 37349720 37349881 -145065361 + L1MC4 LINE L1 7507 7671 -371 2280 86 7 0 chr6 37349885 37350177 -145065065 - AluSc SINE Alu -15 294 1 2300 86 3 0 chr6 37350367 37350668 -145064574 + AluSq SINE Alu 1 302 -11 592 209 78 0 chr6 37350681 37350796 -145064446 + AluJo SINE Alu 123 246 -66 322 312 158 60 chr6 37350797 37351012 -145064230 + L1MC4 LINE L1 7708 7943 -99 237 33 0 0 chr6 37351262 37351292 -145063950 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 581 250 123 37 chr6 37352481 37352805 -145062437 + L1ME4a LINE L1 5599 5950 -171 24 67 0 0 chr6 37352896 37352941 -145062301 + AT_rich Low_complexity Low_complexity 1 45 0 2249 95 7 7 chr6 37353039 37353343 -145061899 + AluSp SINE Alu 1 304 -9 366 221 0 58 chr6 37353478 37353564 -145061678 + L2 LINE L2 3186 3266 -6 548 275 60 36 chr6 37353676 37353843 -145061399 - MER5B DNA MER1_type -4 174 4 1798 175 14 0 chr6 37353912 37354209 -145061033 + AluJb SINE Alu 1 301 -11 2248 97 3 0 chr6 37354619 37354917 -145060325 + AluSp SINE Alu 2 300 -13 475 246 196 0 chr6 37355600 37355738 -145059504 - MER5A DNA MER1_type 0 189 25 238 330 11 23 chr6 37355762 37355850 -145059392 + L2 LINE L2 3143 3229 -43 1764 133 55 14 chr6 37356532 37356825 -145058417 + AluJb SINE Alu 1 305 -7 39 0 0 0 chr6 37358756 37358795 -145056447 + GC_rich Low_complexity Low_complexity 1 39 0 209 224 28 37 chr6 37358875 37358982 -145056260 + (CCCG)n Simple_repeat Simple_repeat 3 108 0 243 0 0 0 chr6 37360011 37360038 -145055204 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 618 212 57 61 chr6 37360119 37360364 -145054878 + MER112 DNA MER1_type 17 260 0 192 383 35 26 chr6 37360376 37360491 -145054751 - MIR SINE MIR -73 135 20 259 238 48 0 chr6 37360627 37360690 -145054552 - L2 LINE L2 0 3272 3207 315 193 172 110 chr6 37361333 37361366 -145053876 + MIR SINE MIR 9 39 -223 2335 86 0 3 chr6 37361366 37361668 -145053574 - AluSc SINE Alu -8 301 1 315 193 172 110 chr6 37361668 37361779 -145053463 + MIR SINE MIR 39 162 -100 302 316 97 0 chr6 37361983 37362097 -145053145 - L1MC4 LINE L1 -4 8038 7914 2161 125 0 10 chr6 37362115 37362428 -145052814 + AluSx SINE Alu 1 310 -2 1747 149 7 30 chr6 37362440 37362741 -145052501 + AluJb SINE Alu 3 296 -16 254 296 24 40 chr6 37362952 37363077 -145052165 - L1ME LINE L1 -359 5811 5689 476 253 104 42 chr6 37363103 37363180 -145052062 - MER112 DNA MER1_type 0 260 189 2450 63 0 0 chr6 37363180 37363481 -145051761 - AluY SINE Alu -10 301 1 476 253 104 42 chr6 37363481 37363644 -145051598 - MER112 DNA MER1_type -71 189 5 436 325 6 6 chr6 37363647 37363807 -145051435 - L1ME LINE L1 -508 5656 5497 180 0 0 0 chr6 37363931 37363951 -145051291 + (CACTT)n Simple_repeat Simple_repeat 1 20 0 1012 123 0 0 chr6 37363993 37364131 -145051111 + AluSq/x SINE Alu 1 138 -174 2234 76 0 7 chr6 37364133 37364454 -145050788 + AluY SINE Alu 7 311 0 2419 83 0 0 chr6 37364457 37364759 -145050483 + AluSq SINE Alu 1 302 -11 2116 103 7 3 chr6 37365243 37365535 -145049707 - AluSq SINE Alu -20 293 1 207 272 109 61 chr6 37365842 37365989 -145049253 + MIR SINE MIR 54 207 -1 270 0 0 0 chr6 37366356 37366386 -145048856 + (CA)n Simple_repeat Simple_repeat 2 31 0 2071 104 33 3 chr6 37366913 37367212 -145048030 + AluSg1 SINE Alu 1 308 -1 396 161 0 0 chr6 37367215 37367296 -145047946 + GA-rich Low_complexity Low_complexity 4 84 0 216 374 149 0 chr6 37367304 37367411 -145047831 + MIR SINE MIR 26 148 -114 980 249 36 22 chr6 37367417 37367489 -145047753 - LTR33 LTR ERVL 0 521 452 2098 119 0 3 chr6 37367489 37367784 -145047458 + AluSx SINE Alu 6 299 -13 980 249 36 22 chr6 37367784 37368161 -145047081 - LTR33 LTR ERVL -69 452 1 445 314 178 47 chr6 37369531 37370245 -145044997 - L2 LINE L2 0 3313 2481 1203 214 34 7 chr6 37370664 37370959 -145044283 - L1MC2 LINE L1 -9 6335 6033 272 247 14 14 chr6 37371087 37371160 -145044082 - MIR SINE MIR -131 131 59 264 278 48 55 chr6 37371167 37371428 -145043814 - LTR16C LTR ERVL -4 487 158 208 271 17 0 chr6 37371551 37371610 -145043632 - L2 LINE L2 0 3272 3213 322 205 26 26 chr6 37372256 37372334 -145042908 - MIR SINE MIR -109 153 76 184 360 40 0 chr6 37372336 37372411 -145042831 - MIR SINE MIR -112 150 73 468 290 43 7 chr6 37372413 37372551 -145042691 - MIR SINE MIR -115 147 5 32 0 0 0 chr6 37373133 37373165 -145042077 + AT_rich Low_complexity Low_complexity 1 32 0 537 223 123 0 chr6 37373293 37373423 -145041819 - MIR SINE MIR 0 262 117 218 270 32 0 chr6 37373443 37373506 -145041736 + L2 LINE L2 2979 3043 -229 277 228 79 94 chr6 37373585 37373621 -145041621 + MIR SINE MIR 46 81 -181 2281 97 0 0 chr6 37373621 37373920 -145041322 - AluSg SINE Alu -11 299 1 277 228 79 94 chr6 37373920 37374010 -145041232 + MIR SINE MIR 81 170 -92 2006 144 27 47 chr6 37374027 37374052 -145041190 + MSTB LTR MaLR 31 55 -371 2368 83 0 0 chr6 37374052 37374353 -145040889 + AluSg SINE Alu 3 303 -7 2006 144 27 47 chr6 37374353 37374729 -145040513 + MSTB LTR MaLR 55 424 -2 9080 160 42 28 chr6 37374735 37375274 -145039968 + MSTB-int LTR MaLR 1 531 -1120 2043 108 20 3 chr6 37375274 37375569 -145039673 - AluSq SINE Alu -13 300 1 9080 160 42 28 chr6 37375569 37376330 -145038912 + MSTB-int LTR MaLR 531 1332 -319 1985 116 3 0 chr6 37376330 37376649 -145038593 + AluSx SINE Alu 1 320 0 9080 160 42 28 chr6 37376649 37376971 -145038271 + MSTB-int LTR MaLR 1332 1648 -3 2676 126 20 48 chr6 37376974 37377173 -145038069 + MSTB LTR MaLR 1 204 -222 2227 102 0 7 chr6 37377173 37377468 -145037774 + AluSx SINE Alu 1 293 -19 2676 126 20 48 chr6 37377468 37377706 -145037536 + MSTB LTR MaLR 204 426 0 213 351 0 0 chr6 37377706 37377783 -145037459 + MIR SINE MIR 168 244 -18 569 247 134 4 chr6 37377913 37378144 -145037098 - LTR16C LTR ERVL 0 491 231 1742 150 14 7 chr6 37378169 37378456 -145036786 - AluJo SINE Alu -23 289 1 2080 91 4 7 chr6 37378479 37378755 -145036487 + AluSx SINE Alu 1 275 -37 2415 75 3 0 chr6 37378756 37379061 -145036181 + AluSp SINE Alu 1 306 -7 656 187 114 0 chr6 37379061 37379184 -145036058 - FRAM SINE Alu -39 137 1 492 220 43 35 chr6 37379185 37379326 -145035916 - LTR16C LTR ERVL -258 233 92 2243 97 0 0 chr6 37379518 37379817 -145035425 + AluSc SINE Alu 2 300 -9 2314 80 0 19 chr6 37379825 37380137 -145035105 + AluY SINE Alu 1 306 -5 286 185 8 12 chr6 37380740 37380877 -145034365 - MER2 DNA MER2_type 0 345 165 2265 103 6 3 chr6 37380880 37381191 -145034051 + AluSx SINE Alu 1 312 0 2165 113 3 0 chr6 37381336 37381647 -145033595 + AluSp SINE Alu 1 312 -1 1178 118 0 0 chr6 37381647 37381816 -145033426 + AluSq SINE Alu 134 302 -11 680 230 9 59 chr6 37382301 37382332 -145032910 - L2 LINE L2 -1 3312 3281 600 192 80 16 chr6 37382332 37382457 -145032785 - FLAM_A SINE Alu 0 133 1 680 230 9 59 chr6 37382457 37382647 -145032595 - L2 LINE L2 -32 3281 3102 863 94 6 126 chr6 37382649 37382808 -145032434 + AluSq/x SINE Alu 1 140 -172 660 126 0 39 chr6 37382826 37382929 -145032313 - AluJb SINE Alu -209 103 5 723 261 70 55 chr6 37382942 37383133 -145032109 - L2 LINE L2 -244 3069 2867 2171 109 3 26 chr6 37383133 37383446 -145031796 + AluSx SINE Alu 1 306 -6 723 261 70 55 chr6 37383446 37383595 -145031647 - L2 LINE L2 -446 2867 2722 414 293 49 76 chr6 37383625 37383713 -145031529 - MIR SINE MIR -21 241 152 2083 101 3 21 chr6 37383713 37384036 -145031206 + AluSp SINE Alu 1 318 0 414 293 49 76 chr6 37384036 37384050 -145031192 - MIR SINE MIR -110 152 139 2271 85 6 16 chr6 37384050 37384366 -145030876 + AluSp SINE Alu 1 313 0 414 293 49 76 chr6 37384366 37384486 -145030756 - MIR SINE MIR -123 139 23 1358 139 33 19 chr6 37384543 37384758 -145030484 - MER20 DNA MER1_type 0 219 2 220 388 0 10 chr6 37384909 37385012 -145030230 + L2 LINE L2 2753 2854 -460 2018 84 3 51 chr6 37385457 37385603 -145029639 + AluSx SINE Alu 1 152 -205 1781 33 9 0 chr6 37385603 37385813 -145029429 + AluY SINE Alu 92 303 -8 1938 119 0 44 chr6 37385813 37386132 -145029110 + AluSc SINE Alu 1 305 -4 2018 84 3 51 chr6 37386132 37386355 -145028887 + AluSx SINE Alu 150 357 0 307 274 76 79 chr6 37386462 37386739 -145028503 + L2 LINE L2 2939 3214 -58 738 271 213 6 chr6 37387219 37387350 -145027892 + L2 LINE L2 2615 2718 -595 758 121 179 0 chr6 37387350 37387490 -145027752 + FRAM SINE Alu 1 165 -1 738 271 213 6 chr6 37387490 37387912 -145027330 + L2 LINE L2 2718 3296 -17 2136 102 3 7 chr6 37387923 37388218 -145027024 - AluSq SINE Alu -19 294 1 299 267 71 52 chr6 37388240 37388408 -145026834 - MIR SINE MIR -58 150 1 222 113 14 113 chr6 37388730 37388801 -145026441 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 347 219 119 46 chr6 37388892 37389043 -145026199 - MER91A DNA MER1_type 0 196 35 201 281 0 0 chr6 37389534 37389598 -145025644 - MIR SINE MIR -62 146 83 363 80 0 0 chr6 37391606 37391656 -145023586 + L1PA5 LINE L1 6105 6154 0 2029 145 0 0 chr6 37392094 37392391 -145022851 - AluJb SINE Alu -15 297 1 199 294 219 8 chr6 37392510 37392629 -145022613 - MIR3 SINE MIR -56 152 9 546 301 0 12 chr6 37392889 37393062 -145022180 - MIR3 SINE MIR -7 201 31 279 54 0 0 chr6 37393091 37393128 -145022114 + (TG)n Simple_repeat Simple_repeat 1 37 0 546 233 218 5 chr6 37393808 37394001 -145021241 + MIR SINE MIR 18 251 -11 859 261 23 9 chr6 37394982 37395200 -145020042 - MIR SINE MIR -14 248 28 2396 74 3 0 chr6 37396927 37397237 -145018005 - AluY SINE Alu 0 311 1 2345 91 0 0 chr6 37397237 37397544 -145017698 - AluSc SINE Alu -2 307 1 2065 99 3 39 chr6 37397547 37397716 -145017526 - AluSq SINE Alu -12 301 128 2230 103 6 0 chr6 37397716 37398027 -145017215 - AluSp SINE Alu 0 313 1 2056 61 0 11 chr6 37398029 37398291 -145016951 - AluY SINE Alu -12 299 41 2065 99 3 39 chr6 37398291 37398430 -145016812 - AluSq SINE Alu -186 127 1 1396 151 50 76 chr6 37398430 37398747 -145016495 - AluJo SINE Alu -3 309 1 1818 153 0 36 chr6 37398750 37399058 -145016184 - AluJo SINE Alu -15 297 1 2164 99 0 7 chr6 37399215 37399508 -145015734 - AluSc SINE Alu -18 291 1 267 281 141 8 chr6 37399520 37399648 -145015594 + MIR SINE MIR 104 248 -14 1871 84 0 0 chr6 37400783 37401020 -145014222 - AluSg SINE Alu -12 298 62 391 327 106 18 chr6 37401690 37401907 -145013335 + MIR SINE MIR 17 252 -10 634 109 33 0 chr6 37402285 37402377 -145012865 + AluSg1 SINE Alu 1 95 -214 211 204 0 20 chr6 37403102 37403151 -145012091 + MIR SINE MIR 46 93 -115 394 269 101 13 chr6 37403235 37403384 -145011858 + MIR SINE MIR 29 190 -72 2425 70 0 10 chr6 37403451 37403798 -145011444 - AluY SINE Alu 0 344 1 2306 77 3 10 chr6 37403799 37404098 -145011144 - AluSp SINE Alu -14 299 3 301 263 204 72 chr6 37405253 37405405 -145009837 + MIR SINE MIR 1 172 -90 231 295 55 0 chr6 37408409 37408529 -145006713 - MIR SINE MIR -9 253 123 2273 80 0 51 chr6 37409638 37409950 -145005292 - AluSg SINE Alu -14 296 1 351 179 0 0 chr6 37410004 37410071 -145005171 + (TG)n Simple_repeat Simple_repeat 1 67 0 2267 108 10 3 chr6 37410270 37410576 -145004666 + AluSp SINE Alu 1 308 -5 2209 86 34 0 chr6 37411496 37411787 -145003455 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 37413374 37413395 -145001847 + AT_rich Low_complexity Low_complexity 1 21 0 972 148 36 61 chr6 37413402 37413598 -145001644 + AluJo SINE Alu 84 274 -38 584 119 0 10 chr6 37413605 37413706 -145001536 + (GGGA)n Simple_repeat Simple_repeat 1 100 0 645 164 112 154 chr6 37413711 37413997 -145001245 + LTR54 LTR ERV1 45 318 -192 884 143 0 0 chr6 37414001 37414127 -145001115 + FLAM_C SINE Alu 9 134 -9 2454 83 3 19 chr6 37414127 37414441 -145000801 + AluSp SINE Alu 1 309 -4 880 153 11 69 chr6 37414463 37414519 -145000723 + LTR54 LTR ERV1 333 391 -119 2247 100 0 36 chr6 37414519 37414820 -145000422 + AluSx SINE Alu 3 292 -20 880 153 11 69 chr6 37414820 37414952 -145000290 + LTR54 LTR ERV1 391 510 0 243 91 0 0 chr6 37415054 37415087 -145000155 - L2 LINE L2 -1 3271 3239 2160 92 14 10 chr6 37415212 37415504 -144999738 - AluSp SINE Alu -19 294 2 775 106 71 0 chr6 37415518 37415631 -144999611 - AluJb SINE Alu -19 293 173 2307 102 6 19 chr6 37415658 37415973 -144999269 + AluSq SINE Alu 1 311 -2 226 254 206 0 chr6 37416007 37416070 -144999172 + MIR SINE MIR 13 88 -174 2134 124 0 3 chr6 37416103 37416401 -144998841 - AluSg SINE Alu -13 297 1 781 192 0 0 chr6 37416407 37416532 -144998710 - FLAM_C SINE Alu -17 126 2 2502 96 0 0 chr6 37416559 37416871 -144998371 + AluSx SINE Alu 1 312 0 688 158 108 0 chr6 37416875 37416995 -144998247 + AluJ SINE Alu 1 133 -169 1943 154 0 19 chr6 37417017 37417150 -144998092 + AluJo SINE Alu 3 137 -175 2162 100 0 43 chr6 37417150 37417487 -144997755 + AluSx SINE Alu 1 324 0 1943 154 0 19 chr6 37417487 37417662 -144997580 + AluJo SINE Alu 137 307 -5 225 308 137 17 chr6 37417673 37417790 -144997452 - MIR SINE MIR -14 248 118 1016 156 17 22 chr6 37417791 37417970 -144997272 + AluJ SINE Alu 134 311 -1 971 227 50 78 chr6 37418000 37418154 -144997088 - MLT1H LTR MaLR -198 351 194 2445 76 0 7 chr6 37418154 37418458 -144996784 - AluSp SINE Alu -11 302 1 971 227 50 78 chr6 37418458 37418584 -144996658 - MLT1H LTR MaLR -355 194 81 2385 60 40 3 chr6 37418584 37418883 -144996359 + AluY SINE Alu 2 311 0 971 227 50 78 chr6 37418883 37418962 -144996280 - MLT1H LTR MaLR -468 81 1 1792 151 10 36 chr6 37418983 37419288 -144995954 - AluJo SINE Alu -15 297 1 2263 89 31 0 chr6 37419431 37419722 -144995520 - AluSx SINE Alu -12 300 1 2066 142 7 0 chr6 37420164 37420452 -144994790 - AluSx SINE Alu -21 291 2 1416 201 37 8 chr6 37420565 37420833 -144994409 - AluJo SINE Alu -24 288 13 2212 106 17 10 chr6 37420861 37421163 -144994079 + AluSx SINE Alu 1 304 -8 2161 86 11 4 chr6 37421256 37421561 -144993681 - AluY SINE Alu 0 308 2 1824 117 36 22 chr6 37421562 37421836 -144993406 - AluSp SINE Alu -35 278 1 826 190 0 25 chr6 37421843 37422001 -144993241 - AluJ SINE Alu -12 290 137 334 61 20 0 chr6 37422001 37422050 -144993192 - AluJ SINE Alu -166 136 87 * 1374 229 34 96 chr6 37422039 37422568 -144992674 + LTR8 LTR ERV1 196 691 0 2406 91 7 0 chr6 37422646 37422955 -144992287 - AluSp SINE Alu -2 311 1 271 224 160 32 chr6 37422958 37423083 -144992159 - MLT1H LTR MaLR -146 403 263 203 51 26 51 chr6 37423227 37423266 -144991976 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 1570 149 17 85 chr6 37423268 37423391 -144991851 + AluSx SINE Alu 1 131 -181 425 88 0 15 chr6 37423391 37423459 -144991783 + (TA)n Simple_repeat Simple_repeat 1 67 0 1570 149 17 85 chr6 37423459 37423630 -144991612 + AluSx SINE Alu 131 275 -37 2318 101 7 3 chr6 37423630 37423936 -144991306 - AluSq SINE Alu -5 308 1 2078 83 4 0 chr6 37424094 37424348 -144990894 + AluSp SINE Alu 21 275 -38 1893 110 0 16 chr6 37424428 37424682 -144990560 + AluSq SINE Alu 1 250 -63 207 0 0 0 chr6 37424686 37424709 -144990533 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2299 113 0 3 chr6 37424727 37425028 -144990214 - AluSx SINE Alu -12 300 1 1678 172 17 33 chr6 37425104 37425406 -144989836 + AluJo SINE Alu 1 297 -15 2252 108 0 0 chr6 37425630 37425925 -144989317 - AluSg SINE Alu -15 295 1 2318 92 3 0 chr6 37426000 37426292 -144988950 - AluSc SINE Alu -14 295 3 1838 159 0 3 chr6 37426701 37426984 -144988258 + AluJb SINE Alu 1 282 -30 1768 172 3 7 chr6 37426986 37427276 -144987966 - AluJb SINE Alu -13 299 11 2300 96 0 0 chr6 37427311 37427604 -144987638 + AluSx SINE Alu 1 293 -19 225 0 0 0 chr6 37427720 37427745 -144987497 + (T)n Simple_repeat Simple_repeat 1 25 0 1671 127 104 4 chr6 37427939 37428207 -144987035 - AluJb SINE Alu -17 295 1 1500 179 11 11 chr6 37428207 37428480 -144986762 + AluJo SINE Alu 27 299 -13 2191 109 0 40 chr6 37428774 37429096 -144986146 - AluSg SINE Alu -1 309 1 2143 106 6 58 chr6 37429096 37429424 -144985818 - AluSx SINE Alu 0 312 1 941 171 15 68 chr6 37429430 37429589 -144985653 + Tigger3(Golem) DNA MER2_type 2835 2982 -46 2291 116 0 0 chr6 37429589 37429900 -144985342 + AluSx SINE Alu 1 311 -1 941 171 15 68 chr6 37429900 37429945 -144985297 + Tigger3(Golem) DNA MER2_type 2982 3028 0 728 175 19 69 chr6 37429999 37430159 -144985083 + FAM SINE Alu 24 175 -10 1927 142 30 26 chr6 37430329 37430631 -144984611 - AluSx SINE Alu -9 303 1 1528 173 13 33 chr6 37430837 37431143 -144984099 + AluJb SINE Alu 6 305 -7 592 126 202 0 chr6 37431155 37431274 -144983968 - MER7A DNA MER2_type -204 142 2 2280 82 20 10 chr6 37431814 37432106 -144983136 - AluSx SINE Alu -15 297 3 2291 116 0 3 chr6 37432729 37433040 -144982202 + AluSg SINE Alu 1 310 0 1813 180 0 16 chr6 37433055 37433366 -144981876 + AluJo SINE Alu 1 306 -6 1677 40 56 0 chr6 37433377 37433575 -144981667 + AluY SINE Alu 86 294 -17 2322 104 0 25 chr6 37433960 37434278 -144980964 - AluSx SINE Alu -2 310 1 2153 103 24 0 chr6 37434562 37434852 -144980390 + AluSx SINE Alu 1 297 -15 1976 101 57 30 chr6 37435336 37435632 -144979610 - AluSx SINE Alu -8 304 1 302 239 0 14 chr6 37436524 37436595 -144978647 - MER94 DNA DNA 0 134 65 261 286 14 0 chr6 37436625 37436695 -144978547 - MER94 DNA DNA -59 75 5 712 214 0 0 chr6 37437150 37437296 -144977946 + Tigger3(Golem) DNA MER2_type 1 2572 -457 2504 79 0 13 chr6 37437300 37437616 -144977626 - AluSx SINE Alu 0 312 1 1939 144 3 3 chr6 37437652 37437943 -144977299 - AluSx SINE Alu -21 291 1 1736 149 9 72 chr6 37437944 37438112 -144977130 - AluJo SINE Alu -11 301 124 2184 125 0 7 chr6 37438112 37438415 -144976827 - AluSx SINE Alu -11 301 1 195 69 0 0 chr6 37438417 37438446 -144976796 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1986 127 8 0 chr6 37438455 37438723 -144976519 - AluSx SINE Alu -36 276 7 1736 149 9 72 chr6 37438723 37438862 -144976380 - AluJo SINE Alu -197 115 1 404 59 0 0 chr6 37438862 37438913 -144976329 - AluSg/x SINE Alu -175 134 84 1092 231 0 5 chr6 37438913 37439134 -144976108 - AluJo SINE Alu -92 220 1 1894 151 9 35 chr6 37439136 37439453 -144975789 - 7SLRNA srpRNA srpRNA -11 309 1 2307 104 0 3 chr6 37439460 37439758 -144975484 - AluSg SINE Alu -13 297 1 2393 115 112 2 chr6 37439758 37440176 -144975066 + Tigger3(Golem) DNA MER2_type 2563 3026 -3 336 283 175 0 chr6 37440467 37440587 -144974655 - MIR SINE MIR -1 261 121 2235 107 0 3 chr6 37440590 37440880 -144974362 + AluSc SINE Alu 1 289 -20 2537 72 0 0 chr6 37440890 37441196 -144974046 - AluY SINE Alu 0 311 6 419 222 66 111 chr6 37441196 37441492 -144973750 - L1ME4a LINE L1 -1 6120 5847 769 149 0 25 chr6 37441492 37441613 -144973629 - FLAM_A SINE Alu -15 118 1 419 222 66 111 chr6 37441613 37441739 -144973503 - L1ME4a LINE L1 -274 5847 5717 2233 81 0 55 chr6 37442366 37442698 -144972544 - AluSg SINE Alu 0 310 1 427 155 17 103 chr6 37442765 37442881 -144972361 - L2 LINE L2 -20 3293 3188 21 0 0 0 chr6 37443033 37443054 -144972188 + AT_rich Low_complexity Low_complexity 1 21 0 429 119 15 0 chr6 37443058 37443125 -144972117 + AluJ/FLAM SINE Alu 3 70 -242 870 201 6 6 chr6 37443125 37443294 -144971948 + AluJo/FRAM SINE Alu 138 307 -1 2384 98 0 0 chr6 37443294 37443591 -144971651 - AluSq SINE Alu -16 297 1 1620 179 17 10 chr6 37443704 37443995 -144971247 + AluJo SINE Alu 9 301 -11 697 178 7 22 chr6 37444039 37444174 -144971068 - FLAM_C SINE Alu 0 133 1 1754 137 11 32 chr6 37444414 37444698 -144970544 + AluJb SINE Alu 21 298 -14 335 245 98 44 chr6 37444851 37445105 -144970137 - L1ME4a LINE L1 -660 5506 5243 * 782 121 25 126 chr6 37445102 37445158 -144970084 - L1MB7 LINE L1 -12 6172 6112 894 130 15 0 chr6 37445158 37445289 -144969953 - FLAM_C SINE Alu 0 133 1 782 121 25 126 chr6 37445289 37445430 -144969812 - L1MB7 LINE L1 -72 6112 5995 839 96 0 17 chr6 37445430 37445545 -144969697 - AluSp/q SINE Alu -19 294 182 489 138 46 0 chr6 37445553 37445640 -144969602 - L1MB7 LINE L1 -200 5984 5894 964 157 7 0 chr6 37445640 37445780 -144969462 - FRAM SINE Alu -36 140 1 2216 107 7 7 chr6 37445950 37446259 -144968983 + AluY SINE Alu 1 309 -2 742 245 7 0 chr6 37446281 37446424 -144968818 - AluJ SINE Alu -31 281 138 6857 147 154 38 chr6 37446424 37447938 -144967304 - pTR5 LTR ERV1 -6 2432 743 2312 105 0 10 chr6 37447955 37448259 -144966983 - AluSx SINE Alu -11 301 1 24 0 0 0 chr6 37448259 37448283 -144966959 + AT_rich Low_complexity Low_complexity 1 24 0 985 131 0 0 chr6 37448309 37448439 -144966803 - AluJ SINE Alu -171 141 12 360 261 62 66 chr6 37448446 37448480 -144966762 - L1ME4a LINE L1 -1108 5038 5005 2252 80 35 0 chr6 37448480 37448769 -144966473 - AluY SINE Alu -12 299 1 360 261 62 66 chr6 37448769 37448941 -144966301 - L1ME4a LINE L1 -1141 5005 4836 2197 131 3 0 chr6 37448948 37449253 -144965989 - AluSx SINE Alu -6 306 1 344 293 78 48 chr6 37449253 37449420 -144965822 - L1ME4a LINE L1 -1732 4414 4243 2226 147 0 0 chr6 37449442 37449754 -144965488 - AluSx SINE Alu 0 312 1 1627 157 111 7 chr6 37449761 37450041 -144965201 - AluSg1 SINE Alu 0 309 1 2489 87 0 0 chr6 37450096 37450396 -144964846 - AluSc SINE Alu -9 300 1 1954 174 0 0 chr6 37450407 37450701 -144964541 - AluJb SINE Alu -18 294 1 665 209 20 70 chr6 37451341 37451542 -144963700 - MLT1J LTR MaLR -82 429 239 397 175 219 44 chr6 37451569 37451683 -144963559 - MER5A DNA MER1_type -7 182 49 240 299 13 13 chr6 37451700 37451777 -144963465 - MLT1J LTR MaLR -298 213 137 2359 100 0 0 chr6 37451966 37452257 -144962985 + AluSg SINE Alu 1 291 -19 2231 113 3 16 chr6 37452451 37452760 -144962482 + AluSg SINE Alu 6 310 0 2327 81 17 7 chr6 37452769 37453065 -144962177 + AluSp SINE Alu 1 299 -14 299 145 32 0 chr6 37453214 37453276 -144961966 + L1MB3 LINE L1 5257 5320 -863 2043 122 10 10 chr6 37453305 37453601 -144961641 - AluJo SINE Alu -16 296 1 397 119 59 153 chr6 37453602 37453720 -144961522 + L1MB3 LINE L1 5461 5567 -616 1829 163 27 85 chr6 37453734 37453975 -144961267 - MER21B LTR ERV1 -3 860 651 6735 39 0 18 chr6 37453975 37454768 -144960474 - SVA Other Other 0 1386 608 1829 163 27 85 chr6 37454768 37454936 -144960306 - MER21B LTR ERV1 -212 651 475 447 88 75 12 chr6 37454936 37455016 -144960226 - LTR23 LTR ERV1 0 437 353 2215 90 7 0 chr6 37455052 37455358 -144959884 - AluSg SINE Alu 0 308 1 1971 150 0 7 chr6 37455377 37455671 -144959571 - AluJo SINE Alu -14 298 7 2307 154 130 2 chr6 37455731 37456154 -144959088 - MER21B LTR ERV1 -386 477 1 2685 114 26 42 chr6 37456154 37456276 -144958966 + L1MB3 LINE L1 5561 5683 -500 2426 67 20 3 chr6 37456276 37456574 -144958668 + AluSq SINE Alu 1 303 -10 2685 114 26 42 chr6 37456574 37456908 -144958334 + L1MB3 LINE L1 5683 6010 -173 1716 162 27 68 chr6 37456908 37456966 -144958276 + MER57A LTR ERV1 7 66 -337 2287 109 3 10 chr6 37456966 37457279 -144957963 + AluSp SINE Alu 1 311 -2 1716 162 27 68 chr6 37457279 37457634 -144957608 + MER57A LTR ERV1 66 403 0 566 205 8 8 chr6 37457634 37457756 -144957486 + L1MB3 LINE L1 6006 6127 -56 2079 192 70 24 chr6 37458097 37458679 -144956563 + pTR5 LTR ERV1 734 1342 -1096 3672 139 57 135 chr6 37458691 37459582 -144955660 + LTR12 LTR ERV1 5 826 0 2074 126 3 3 chr6 37459651 37459937 -144955305 + AluSx SINE Alu 2 287 -25 2382 104 3 0 chr6 37460244 37460553 -144954689 - AluSp SINE Alu -3 310 1 2076 93 3 84 chr6 37461245 37461577 -144953665 - AluSq SINE Alu -8 305 1 2248 90 0 17 chr6 37461579 37461868 -144953374 - AluSq SINE Alu 0 313 30 1676 146 62 31 chr6 37461963 37462251 -144952991 - AluJb SINE Alu -15 297 1 1049 157 13 0 chr6 37463178 37463337 -144951905 - AluJb SINE Alu -18 294 134 2334 108 3 0 chr6 37463367 37463673 -144951569 + AluSx SINE Alu 3 309 -3 2323 112 0 3 chr6 37463673 37463985 -144951257 + AluSx SINE Alu 1 311 -1 639 267 12 6 chr6 37464356 37464517 -144950725 - MER58B DNA MER1_type -1 340 179 186 43 0 0 chr6 37464530 37464553 -144950689 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2317 122 0 0 chr6 37464560 37464872 -144950370 - AluJb SINE Alu 0 312 1 2195 96 11 0 chr6 37465183 37465487 -144949755 - AluSx SINE Alu 0 307 1 997 241 106 29 chr6 37465877 37466254 -144948988 - MLT1C LTR MaLR -3 464 59 183 42 0 0 chr6 37467611 37467635 -144947607 + (CCCTG)n Simple_repeat Simple_repeat 3 26 0 1018 80 0 0 chr6 37467978 37468103 -144947139 - AluY SINE Alu -10 301 177 1826 88 4 28 chr6 37468103 37468354 -144946888 - AluY SINE Alu -66 245 1 1602 126 9 0 chr6 37468522 37468745 -144946497 - AluSg/x SINE Alu -3 307 83 1675 172 62 10 chr6 37468806 37469097 -144946145 + AluJb SINE Alu 1 306 -6 1915 152 14 3 chr6 37469781 37470064 -144945178 - AluJo SINE Alu -17 295 10 401 275 96 62 chr6 37471169 37471316 -144943926 - MIR SINE MIR 0 262 107 2324 75 0 0 chr6 37471316 37471594 -144943648 + AluSp SINE Alu 18 295 -18 401 275 96 62 chr6 37471594 37471624 -144943618 - MIR SINE MIR -155 107 79 2102 123 17 3 chr6 37471687 37471987 -144943255 - AluSq SINE Alu -9 304 1 340 85 0 0 chr6 37471988 37472035 -144943207 + MER112 DNA MER1_type 6 52 -208 1073 113 0 0 chr6 37472039 37472181 -144943061 + AluSq/x SINE Alu 5 146 -167 358 154 22 132 chr6 37472181 37472231 -144943011 + MER112 DNA MER1_type 7 61 -199 2253 116 0 0 chr6 37472231 37472525 -144942717 + AluSx SINE Alu 5 298 -14 358 154 22 132 chr6 37472525 37472610 -144942632 + MER112 DNA MER1_type 61 127 -133 273 172 16 0 chr6 37472614 37472678 -144942564 - MER57A LTR ERV1 0 403 339 819 180 8 0 chr6 37472678 37472806 -144942436 + FLAM_C SINE Alu 2 130 -3 1715 140 0 8 chr6 37472831 37473074 -144942168 + AluSx SINE Alu 60 300 -12 2195 123 0 0 chr6 37473155 37473448 -144941794 - AluSx SINE Alu -19 293 1 362 323 40 16 chr6 37473473 37473597 -144941645 + L2 LINE L2 3180 3306 -7 1357 320 68 9 chr6 37473602 37474148 -144941094 + L3 LINE CR1 564 1141 -436 235 322 28 11 chr6 37474262 37474442 -144940800 + L1M3 LINE L1 5254 5436 -732 239 233 44 11 chr6 37474443 37474533 -144940709 + L1ME LINE L1 52 144 -5975 2366 102 0 3 chr6 37474533 37474836 -144940406 + AluSx SINE Alu 1 302 -10 679 152 27 0 chr6 37475021 37475133 -144940109 - FLAM_C SINE Alu 0 143 29 411 313 50 35 chr6 37475283 37475484 -144939758 + L1ME LINE L1 520 723 -5396 1602 154 55 18 chr6 37475724 37475997 -144939245 + AluJb SINE Alu 15 297 -15 4368 130 23 140 chr6 37476120 37477600 -144937642 - pTR5 LTR ERV1 0 2606 1524 1738 147 19 4 chr6 37477600 37477696 -144937546 + AluSx SINE Alu 31 124 -188 282 29 0 0 chr6 37477696 37477731 -144937511 + (CA)n Simple_repeat Simple_repeat 2 36 0 1738 147 19 4 chr6 37477731 37477893 -144937349 + AluSx SINE Alu 124 293 -19 1505 166 75 23 chr6 37477926 37478191 -144937051 + AluJb SINE Alu 11 289 -23 258 319 205 6 chr6 37479052 37479218 -144936024 + MIR SINE MIR 20 218 -44 1903 142 7 26 chr6 37479228 37479537 -144935705 - AluJo SINE Alu -6 306 4 743 284 78 33 chr6 37479641 37479923 -144935319 + L1ME LINE L1 680 991 -5128 1721 195 0 13 chr6 37479923 37480225 -144935017 + AluJb SINE Alu 1 298 -14 743 284 78 33 chr6 37480225 37480393 -144934849 + L1ME LINE L1 991 1150 -4969 262 293 53 0 chr6 37480430 37480505 -144934737 - L2 LINE L2 -6 3307 3229 2022 100 64 0 chr6 37480669 37480950 -144934292 + AluSg SINE Alu 12 310 0 270 284 28 28 chr6 37480993 37481102 -144934140 + HAL1 LINE L1 1500 1608 -899 374 226 113 30 chr6 37481188 37481321 -144933921 + L1MC5 LINE L1 7603 7746 -215 5671 143 126 34 chr6 37481329 37482500 -144932742 - MER52C LTR ERV1 0 1278 1 309 327 92 9 chr6 37482521 37482738 -144932504 + L1ME LINE L1 5426 5660 -510 1125 126 0 0 chr6 37482838 37482997 -144932245 - AluSp/q SINE Alu 0 313 155 297 163 0 0 chr6 37482997 37483046 -144932196 - pTR5 LTR ERV1 -1648 790 742 947 140 0 0 chr6 37483046 37483189 -144932053 + AluSg/x SINE Alu 148 290 -22 620 278 112 28 chr6 37483192 37483584 -144931658 + L1MC5 LINE L1 7253 7677 -284 2145 99 3 33 chr6 37484074 37484400 -144930842 + AluSc SINE Alu 1 309 0 1845 90 0 0 chr6 37484494 37484745 -144930497 + AluSg SINE Alu 60 310 0 2297 72 0 4 chr6 37484942 37485220 -144930022 + AluSg SINE Alu 5 281 -29 291 28 0 0 chr6 37485221 37485257 -144929985 + (CA)n Simple_repeat Simple_repeat 2 37 0 1102 331 56 53 chr6 37485272 37485419 -144929823 - HERVL LTR ERVL -2851 2145 2000 1551 184 20 16 chr6 37485419 37485723 -144929519 - AluJo SINE Alu -1 311 7 1102 331 56 53 chr6 37485723 37485913 -144929329 - HERVL LTR ERVL -2996 2000 1812 1937 137 7 11 chr6 37485913 37486220 -144929022 - AluJb SINE Alu 0 306 1 1102 331 56 53 chr6 37486220 37486262 -144928980 - HERVL LTR ERVL -3184 1812 1772 2256 106 6 13 chr6 37486262 37486754 -144928488 - AluSg SINE Alu 0 310 1 1102 331 56 53 chr6 37486754 37487850 -144927392 - HERVL LTR ERVL -3224 1772 736 443 345 0 0 chr6 37487974 37488145 -144927097 - HERVL LTR ERVL -5148 616 446 799 163 8 0 chr6 37488158 37488281 -144926961 - FLAM_C SINE Alu -8 125 2 2188 105 10 7 chr6 37488672 37488968 -144926274 - AluSp SINE Alu -16 297 1 395 228 8 41 chr6 37488986 37489109 -144926133 - LTR41 LTR ERVL -6 767 649 597 178 8 8 chr6 37489621 37489739 -144925503 - LTR41 LTR ERVL -585 188 71 768 176 16 0 chr6 37489761 37489886 -144925356 + FLAM_A SINE Alu 1 127 -6 375 241 75 92 chr6 37490003 37490130 -144925112 + L1M4 LINE L1 4163 4291 -1855 2469 97 0 0 chr6 37490130 37490440 -144924802 - AluSq SINE Alu -3 310 1 375 241 75 92 chr6 37490440 37490519 -144924723 + L1M4 LINE L1 4291 4370 -1776 1837 177 7 3 chr6 37490519 37490819 -144924423 + AluJo SINE Alu 3 303 -9 375 241 75 92 chr6 37490819 37490906 -144924336 + L1M4 LINE L1 4370 4452 -1694 1304 305 72 39 chr6 37490929 37491116 -144924126 + L1M4 LINE L1 10 189 -6353 2210 85 0 7 chr6 37491116 37491444 -144923798 - AluSc SINE Alu 0 326 1 1304 305 72 39 chr6 37491444 37492004 -144923238 + L1M4 LINE L1 189 784 -5758 460 118 35 0 chr6 37492048 37492133 -144923109 + CT-rich Low_complexity Low_complexity 2 89 0 1649 101 5 5 chr6 37492133 37492350 -144922892 - AluSq SINE Alu -95 218 2 2248 73 7 0 chr6 37592667 37592939 -144822303 + AluSq SINE Alu 1 274 -39 2527 72 0 7 chr6 37593047 37593353 -144821889 - AluY SINE Alu -7 304 1 195 212 106 30 chr6 37593500 37593566 -144821676 + L2 LINE L2 3202 3272 0 394 253 152 86 chr6 37594067 37594324 -144820918 + L2 LINE L2 2175 2448 -866 436 332 99 36 chr6 37594822 37595214 -144820028 + L2 LINE L2 2458 2874 -440 1398 101 0 11 chr6 37595623 37595811 -144819431 + AluSg/x SINE Alu 99 284 -26 264 200 0 0 chr6 37595811 37595866 -144819376 + (TA)n Simple_repeat Simple_repeat 1 55 0 1632 163 7 24 chr6 37595906 37596194 -144819048 - AluJb SINE Alu -14 298 16 2397 47 0 20 chr6 37596950 37597247 -144817995 + AluY SINE Alu 1 291 -20 1643 75 133 61 chr6 37597259 37597537 -144817705 + AluSx SINE Alu 1 298 -14 1443 92 0 5 chr6 37597611 37597833 -144817409 - AluSq SINE Alu 0 327 107 339 25 0 0 chr6 37597838 37597878 -144817364 + (TA)n Simple_repeat Simple_repeat 1 40 0 3679 133 28 0 chr6 37597878 37598449 -144816793 - Harlequin LTR ERV1 -424 6472 5886 * 14715 83 13 3 chr6 37598443 37600459 -144814783 - Harlequin LTR ERV1 -1509 5387 3352 6743 43 40 9 chr6 37600458 37601431 -144813811 - Harlequin LTR ERV1 -4322 2574 1572 * 6197 70 35 16 chr6 37601424 37602300 -144812942 - Harlequin LTR ERV1 -6003 893 1 * 3971 52 23 0 chr6 37602300 37602779 -144812463 - LTR2B LTR ERV1 0 490 1 444 165 0 0 chr6 37602825 37602904 -144812338 + L1PA15 LINE L1 6051 6129 -36 2348 113 0 0 chr6 37602914 37603223 -144812019 + AluSx SINE Alu 1 309 -3 2211 86 31 7 chr6 37603421 37603713 -144811529 - AluSx SINE Alu -13 299 1 558 167 0 0 chr6 37603717 37603819 -144811423 - L1PA15 LINE L1 -13 6152 6051 190 244 67 0 chr6 37603857 37603902 -144811340 - L2 LINE L2 -4 3268 3221 2439 71 0 3 chr6 37604087 37604381 -144810861 - AluY SINE Alu -16 295 3 2149 123 3 26 chr6 37604394 37604703 -144810539 - AluY SINE Alu -9 302 1 1075 109 0 27 chr6 37604703 37604839 -144810403 - AluSq/x SINE Alu -179 134 1 2209 110 3 0 chr6 37604860 37605151 -144810091 - AluSp SINE Alu -19 294 3 77 17 0 26 chr6 37605154 37605222 -144810020 + AT_rich Low_complexity Low_complexity 1 69 -45 1286 78 6 0 chr6 37605222 37605389 -144809853 - L1PA8 LINE L1 -11 6161 5994 1900 144 35 3 chr6 37605391 37605675 -144809567 - AluSx SINE Alu -18 294 2 77 17 0 26 chr6 37605675 37605720 -144809522 + AT_rich Low_complexity Low_complexity 70 114 0 896 231 125 3 chr6 37605720 37605901 -144809341 - L1ME2 LINE L1 -2 6162 6004 2265 118 3 0 chr6 37605901 37606207 -144809035 - AluSx SINE Alu -5 307 1 896 231 125 3 chr6 37606207 37606336 -144808906 - L1ME2 LINE L1 -160 6004 5814 1184 124 26 26 chr6 37606345 37606538 -144808704 - AluSc SINE Alu -15 294 102 971 103 0 0 chr6 37606538 37606664 -144808578 + AluSp/q SINE Alu 166 291 -22 593 257 158 0 chr6 37606664 37606816 -144808426 + FRAM SINE Alu 1 40 0 2032 116 14 3 chr6 37606912 37607204 -144808038 - AluSx SINE Alu -14 298 4 2354 90 0 7 chr6 37607249 37607549 -144807693 - AluSg SINE Alu -12 298 1 2558 61 0 0 chr6 37607723 37608020 -144807222 + AluY SINE Alu 1 297 -14 1884 149 20 23 chr6 37608043 37608345 -144806897 - AluSx SINE Alu -11 301 1 2048 129 27 0 chr6 37608367 37608661 -144806581 - AluSq SINE Alu -11 302 1 2130 124 3 10 chr6 37608818 37609125 -144806117 - AluSx SINE Alu -7 305 1 1010 159 0 6 chr6 37609125 37609288 -144805954 - AluSg/x SINE Alu -6 306 145 534 178 8 85 chr6 37609739 37609814 -144805428 + MER5A DNA MER1_type 1 65 -124 2362 82 0 3 chr6 37609814 37610130 -144805112 + AluSq SINE Alu 1 313 0 534 178 8 85 chr6 37610130 37610172 -144805070 + MER5A DNA MER1_type 65 109 -80 443 335 46 57 chr6 37610419 37610700 -144804542 + L2 LINE L2 2994 3271 -1 24 53 0 0 chr6 37611209 37611247 -144803995 + AT_rich Low_complexity Low_complexity 1 38 0 5026 139 17 124 chr6 37611283 37612828 -144802414 + pTR5 LTR ERV1 744 2606 0 701 109 10 0 chr6 37612869 37612970 -144802272 - FRAM SINE Alu -34 142 41 1985 93 24 0 chr6 37613232 37613523 -144801719 - AluSx SINE Alu -14 298 1 2040 95 7 7 chr6 37614441 37614736 -144800506 - AluSx SINE Alu -17 295 1 1646 155 10 16 chr6 37614768 37615072 -144800170 + AluJb SINE Alu 1 302 -10 189 107 0 0 chr6 37615074 37615102 -144800140 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 2073 107 4 0 chr6 37615194 37615475 -144799767 + AluSq SINE Alu 14 295 -18 1214 224 28 50 chr6 37616180 37616502 -144798740 + MLT1A2 LTR MaLR 56 370 -4 471 192 98 62 chr6 37616580 37616773 -144798469 - L2 LINE L2 0 3313 3114 2066 108 0 0 chr6 37616790 37617067 -144798175 + AluSg SINE Alu 2 278 -32 195 42 0 0 chr6 37617076 37617100 -144798142 + (TA)n Simple_repeat Simple_repeat 2 25 0 1074 233 158 65 chr6 37617101 37617575 -144797667 - MLT1G1 LTR MaLR -58 495 15 382 265 70 32 chr6 37617582 37617620 -144797622 - L2 LINE L2 -163 3150 3115 2233 104 0 3 chr6 37617620 37617929 -144797313 + AluSc SINE Alu 1 308 -1 382 265 70 32 chr6 37617929 37618075 -144797167 - L2 LINE L2 -198 3115 2959 3883 130 18 12 chr6 37619446 37620044 -144795198 + LTR43 LTR ERV1 1 602 0 39815 10 6 12 chr6 37620044 37620386 -144794856 + LTR43-int LTR ERV1 1 344 -4454 2228 99 0 3 chr6 37620386 37620690 -144794552 - AluSg SINE Alu -6 304 2 39815 10 6 12 chr6 37620690 37621331 -144793911 + LTR43-int LTR ERV1 344 987 -3811 2115 98 7 0 chr6 37621331 37621617 -144793625 + AluSp SINE Alu 5 292 -21 39815 10 6 12 chr6 37621617 37622232 -144793010 + LTR43-int LTR ERV1 987 1604 -3194 2127 110 0 7 chr6 37622232 37622532 -144792710 - AluSx SINE Alu -14 298 1 39815 10 6 12 chr6 37622532 37622819 -144792423 + LTR43-int LTR ERV1 1604 1891 -2907 2349 85 0 0 chr6 37622819 37623125 -144792117 + AluSg SINE Alu 5 310 0 39815 10 6 12 chr6 37623125 37623266 -144791976 + LTR43-int LTR ERV1 1891 2031 -2767 2239 83 0 0 chr6 37623266 37623555 -144791687 + AluSg SINE Alu 1 289 -21 39815 10 6 12 chr6 37623555 37623620 -144791622 + LTR43-int LTR ERV1 2031 2095 -2703 2004 108 4 0 chr6 37623620 37623898 -144791344 + AluSx SINE Alu 34 312 0 39815 10 6 12 chr6 37623898 37625454 -144789788 + LTR43-int LTR ERV1 2095 3659 -1139 199 232 58 43 chr6 37625454 37625523 -144789719 + L2 LINE L2 1720 1789 -1525 39815 10 6 12 chr6 37625523 37625735 -144789507 + LTR43-int LTR ERV1 3659 3871 -927 2295 89 7 0 chr6 37625735 37626037 -144789205 + AluSc SINE Alu 1 304 -5 39815 10 6 12 chr6 37626037 37626661 -144788581 + LTR43-int LTR ERV1 3871 4531 -267 1360 110 9 37 chr6 37626661 37626879 -144788363 + AluSg/x SINE Alu 85 296 -16 2621 0 0 0 chr6 37626880 37627157 -144788085 + LTR43-int LTR ERV1 4522 4798 0 4283 102 3 26 chr6 37627157 37627773 -144787469 + LTR43 LTR ERV1 1 602 0 812 154 21 14 chr6 37627802 37627945 -144787297 + L1MC3 LINE L1 6698 6841 -944 1592 90 0 5 chr6 37627949 37628160 -144787082 + AluSg SINE Alu 3 212 -98 926 176 47 59 chr6 37628167 37628296 -144786946 + L1M4 LINE L1 4531 4657 -1489 2345 69 26 0 chr6 37628296 37628600 -144786642 + AluSq SINE Alu 1 312 -1 926 176 47 59 chr6 37628600 37628726 -144786516 + L1M4 LINE L1 4657 4783 -1363 * 3268 138 65 95 chr6 37628716 37628878 -144786364 + L1MA8 LINE L1 5552 5717 -574 585 250 8 0 chr6 37628878 37629010 -144786232 - FLAM_A SINE Alu 0 133 1 3268 138 65 95 chr6 37629010 37629349 -144785893 + L1MA8 LINE L1 5717 6065 -226 2023 98 9 35 chr6 37629349 37629664 -144785578 + AluSx SINE Alu 1 307 -5 1646 142 41 8 chr6 37629669 37629936 -144785306 - AluSx SINE Alu -36 276 1 3268 138 65 95 chr6 37629936 37630187 -144785055 + L1MA8 LINE L1 6069 6288 -3 827 157 79 6 chr6 37630199 37630377 -144784865 + L1M4 LINE L1 4762 4952 -1194 904 223 44 23 chr6 37630794 37631100 -144784142 - MSTD LTR MaLR -8 388 16 4354 87 2 0 chr6 37631100 37631653 -144783589 + MER41A LTR ERV1 1 554 0 2064 95 30 3 chr6 37631684 37631979 -144783263 - AluSp SINE Alu -10 303 1 2516 124 136 69 chr6 37632279 37632786 -144782456 + LTR10B LTR ERV1 1 541 -6 2054 129 0 3 chr6 37632812 37633123 -144782119 - AluSg SINE Alu 0 310 1 1913 91 94 0 chr6 37633125 37633401 -144781841 - AluSq SINE Alu -11 302 1 1313 183 91 112 chr6 37633438 37633913 -144781329 - MER4C LTR ERV1 0 465 1 923 229 10 0 chr6 37633917 37634118 -144781124 - MER4C-int LTR ERV1 -1 6597 6395 266 246 33 57 chr6 37634147 37634269 -144780973 - MER4C-int LTR ERV1 -170 6428 6310 386 228 150 0 chr6 37634273 37634400 -144780842 - MER4C LTR ERV1 -205 260 158 5630 116 45 42 chr6 37634450 37634838 -144780404 - LTR49-int LTR ERV1 -520 5811 5426 2046 102 7 3 chr6 37634838 37635132 -144780110 - AluSp SINE Alu -18 295 1 5630 116 45 42 chr6 37635132 37635588 -144779654 - LTR49-int LTR ERV1 -905 5426 4961 2205 102 0 0 chr6 37635588 37635891 -144779351 + AluSg SINE Alu 1 303 -7 5630 116 45 42 chr6 37635891 37636082 -144779160 - LTR49-int LTR ERV1 -1370 4961 4772 1983 104 7 7 chr6 37636083 37636390 -144778852 + AluSg SINE Alu 1 307 0 820 184 18 64 chr6 37636392 37636610 -144778632 - LTR49-int LTR ERV1 -1969 2911 2704 1727 100 0 4 chr6 37636625 37636864 -144778378 - AluSc SINE Alu -71 238 1 1068 216 85 97 chr6 37636864 37637424 -144777818 - LTR49-int LTR ERV1 -2614 2266 1700 2356 93 0 0 chr6 37637424 37637734 -144777508 + AluSg SINE Alu 1 310 0 1068 216 85 97 chr6 37637734 37638023 -144777219 - LTR49-int LTR ERV1 -3180 1700 1001 2168 74 25 3 chr6 37638101 37638385 -144776857 - AluSc SINE Alu -19 290 1 608 148 87 54 chr6 37638397 37638546 -144776696 - LTR49-int LTR ERV1 -5184 1147 994 251 135 115 19 chr6 37638556 37638608 -144776634 - LTR49 LTR ERV1 -276 319 263 3355 78 41 0 chr6 37639226 37639661 -144775581 + MLT2A2 LTR ERVL 1 453 0 2100 104 3 0 chr6 37639848 37640146 -144775096 - AluSp SINE Alu -14 299 1 290 348 0 0 chr6 37641009 37641098 -144774144 - MER82 DNA MER2_type -61 592 504 2280 74 14 0 chr6 37641439 37641735 -144773507 - AluY SINE Alu -11 300 1 8657 219 48 25 chr6 37641735 37642582 -144772660 - HERV3 LTR ERV1 -1084 7342 6516 2443 43 0 13 chr6 37642582 37642884 -144772358 - AluY SINE Alu -13 298 1 8657 219 48 25 chr6 37642884 37643864 -144771378 - HERV3 LTR ERV1 -1910 6516 5469 1123 178 12 89 chr6 37643865 37643986 -144771256 - LTR61 LTR ERV1 -329 266 174 2219 90 0 0 chr6 37643986 37644275 -144770967 + AluY SINE Alu 1 289 -22 1123 178 12 89 chr6 37644275 37644411 -144770831 - LTR61 LTR ERV1 -421 174 29 183 42 0 0 chr6 37644411 37644435 -144770807 + (TTA)n Simple_repeat Simple_repeat 1 24 0 983 313 44 21 chr6 37644566 37645000 -144770242 + LTR33 LTR ERVL 10 453 -68 2154 93 3 0 chr6 37645008 37645297 -144769945 + AluSp SINE Alu 7 296 -17 228 91 0 0 chr6 37645298 37645331 -144769911 + LTR33 LTR ERVL 485 517 -4 2112 99 17 3 chr6 37646024 37646326 -144768916 - AluSq SINE Alu -7 306 1 537 130 98 0 chr6 37646719 37646842 -144768400 + L1MB7 LINE L1 6037 6171 -13 517 267 144 25 chr6 37646855 37647296 -144767946 + L1ME3A LINE L1 5434 5937 -233 557 234 22 54 chr6 37647763 37647947 -144767295 + MER3 DNA MER1_type 4 181 -28 703 132 9 9 chr6 37647964 37648078 -144767164 - MER9 LTR ERVK 0 511 398 3669 98 8 6 chr6 37648080 37648593 -144766649 - HERVK9 LTR ERVK -821 5095 4582 1833 70 4 0 chr6 37648592 37648822 -144766420 - HERVK9 LTR ERVK -1975 3941 3711 * 20385 80 4 10 chr6 37648823 37651568 -144763674 - HERVK9 LTR ERVK -3131 2785 1 3685 113 0 6 chr6 37651568 37652082 -144763160 - MER9 LTR ERVK 0 511 1 402 74 0 0 chr6 37652391 37652445 -144762797 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 1633 108 0 0 chr6 37652447 37652679 -144762563 - AluSg/x SINE Alu -15 297 66 2068 98 37 0 chr6 37652905 37653201 -144762041 + AluSx SINE Alu 1 307 -5 890 174 6 0 chr6 37653263 37653424 -144761818 - FRAM SINE Alu -15 161 1 23 0 0 0 chr6 37653754 37653777 -144761465 + AT_rich Low_complexity Low_complexity 1 23 0 1972 144 7 0 chr6 37655512 37655842 -144759400 + AluSx SINE Alu 1 312 0 213 313 89 16 chr6 37655894 37656053 -144759189 + MIR SINE MIR 21 201 -61 1895 144 0 7 chr6 37656128 37656426 -144758816 - AluSq SINE Alu -17 296 1 2238 154 21 5 chr6 37656839 37657223 -144758019 - MLT1B LTR MaLR 0 390 1 720 64 0 0 chr6 37657248 37657342 -144757900 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2157 120 0 0 chr6 37657354 37657662 -144757580 - AluSx SINE Alu -4 308 1 598 286 40 0 chr6 37658702 37658877 -144756365 + MLT1G1 LTR MaLR 11 192 -403 1652 186 73 13 chr6 37659002 37659481 -144755761 - L1M4 LINE L1 -3828 3020 2513 1362 243 48 6 chr6 37659487 37659820 -144755422 - MLT2C2 LTR ERVL -116 348 2 3703 211 18 38 chr6 37659823 37660255 -144754987 - ERVL-C2 LTR ERVL -7 5757 5350 1466 190 7 18 chr6 37660255 37660568 -144754674 - AluJb SINE Alu 0 316 7 3703 211 18 38 chr6 37660568 37661020 -144754222 - ERVL-C2 LTR ERVL -414 5350 4890 12952 198 15 18 chr6 37661022 37664794 -144750448 + L1PA12 LINE L1 1328 5902 -1682 700 268 126 0 chr6 37664793 37664983 -144750259 - L1M4 LINE L1 -5705 1144 931 * 443 172 54 0 chr6 37665175 37665268 -144749974 + L1MA7 LINE L1 6188 6285 -6 400 327 65 5 chr6 37665281 37665480 -144749762 - L1MEc LINE L1 -4763 1633 1423 1003 255 19 15 chr6 37665639 37665902 -144749340 + MLT2D LTR ERVL 1 264 -150 1416 224 6 54 chr6 37665904 37666253 -144748989 + MER21B-int LTR ERV1 2341 2672 -1519 765 168 22 0 chr6 37666253 37666390 -144748852 + MSTA LTR MaLR 1 140 -288 435 200 0 0 chr6 37666393 37666468 -144748774 + MER21B-int LTR ERV1 2665 2739 -1452 373 287 70 0 chr6 37666474 37666603 -144748639 + FRAM SINE Alu 16 153 -13 1811 248 50 48 chr6 37666603 37666934 -144748308 + MER21B-int LTR ERV1 2728 3062 -1129 4746 164 13 3 chr6 37666934 37667709 -144747533 - LTR39 LTR ERV1 0 783 1 1811 248 50 48 chr6 37667709 37667961 -144747281 + MER21B-int LTR ERV1 3062 3312 -879 2455 204 39 16 chr6 37668060 37668624 -144746618 + MER21B-int LTR ERV1 3463 4039 -152 41510 71 4 7 chr6 37668639 37669013 -144746229 - L1PA6 LINE L1 -4 6150 5777 2388 88 3 3 chr6 37669013 37669319 -144745923 - AluY SINE Alu -5 306 1 41510 71 4 7 chr6 37669319 37675097 -144740145 - L1PA6 LINE L1 -377 5777 11 1569 217 3 3 chr6 37675200 37675495 -144739747 + AluJo SINE Alu 1 295 -17 1768 247 4 43 chr6 37675553 37676018 -144739224 + MER21B LTR ERV1 19 465 -398 617 270 133 19 chr6 37676019 37676338 -144738904 + MSTD LTR MaLR 1 348 -17 1895 146 8 62 chr6 37676349 37676705 -144738537 + MER1B DNA MER1_type 1 337 0 1503 174 16 86 chr6 37676741 37677332 -144737910 + MER4A LTR ERV1 1 465 0 873 256 51 33 chr6 37677345 37677618 -144737624 + MER21B LTR ERV1 505 782 -81 4777 60 12 14 chr6 37677649 37678684 -144736558 - MER11A LTR ERVK 0 1266 1 3216 127 20 49 chr6 37679312 37679942 -144735300 - MER4B LTR ERV1 0 779 1 358 156 89 44 chr6 37680066 37680156 -144735086 - LTR19C LTR ERV1 0 779 686 1616 116 10 93 chr6 37680157 37680458 -144734784 - LTR9 LTR ERV1 -336 276 1 458 286 21 84 chr6 37680463 37680750 -144734492 + LTR67 LTR ERVL 185 453 -104 267 266 64 11 chr6 37681239 37681333 -144733909 + MER5A DNA MER1_type 4 102 -87 1786 252 100 26 chr6 37681436 37682501 -144732741 + L2 LINE L2 2107 3252 -61 950 316 46 17 chr6 37687967 37688558 -144726684 - L1MEc LINE L1 -4155 2241 1634 261 0 0 0 chr6 37688582 37688611 -144726631 + (T)n Simple_repeat Simple_repeat 1 29 0 222 271 31 21 chr6 37688767 37688863 -144726379 + C-rich Low_complexity Low_complexity 4 100 0 1930 243 60 39 chr6 37688887 37689550 -144725692 - L1ME1 LINE L1 -112 6054 5378 255 305 31 31 chr6 37689571 37689699 -144725543 - L1ME1 LINE L1 -1843 4303 4176 750 157 36 29 chr6 37689707 37689847 -144725395 - FLAM_C SINE Alu 0 143 3 926 62 16 0 chr6 37689914 37690043 -144725199 + L1PA8A LINE L1 5267 5397 -734 242 301 6 54 chr6 37691304 37691470 -144723772 + A-rich Low_complexity Low_complexity 1 158 0 5240 97 21 3 chr6 37693891 37694620 -144720622 + L1PA8A LINE L1 5387 6128 -3 872 87 10 1 chr6 37694628 37694757 -144720485 + L1PA13 LINE L1 5655 5790 -373 2873 70 0 41 chr6 37696050 37696465 -144718777 + L1PA13 LINE L1 5766 6163 0 999 291 54 42 chr6 37696667 37697186 -144718056 + L1MEc LINE L1 1516 2040 -4356 342 92 46 15 chr6 37697199 37697264 -144717978 + L1P LINE L1 3148 3214 -2932 212 57 0 29 chr6 37697264 37697299 -144717943 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1403 201 14 27 chr6 37697588 37697881 -144717361 + AluJo SINE Alu 1 289 -23 1833 54 13 5 chr6 37698185 37698409 -144716833 - AluY SINE Alu -85 226 1 948 212 45 74 chr6 37699150 37699569 -144715673 - L1MC5 LINE L1 -470 7491 7085 697 271 174 12 chr6 37699614 37699942 -144715300 + L1ME3A LINE L1 5615 5995 -175 394 285 53 58 chr6 37703660 37704036 -144711206 - L1ME LINE L1 -4863 1679 1306 297 343 17 42 chr6 37704022 37704258 -144710984 - L1ME LINE L1 -5589 1045 816 * 288 200 62 0 chr6 37704670 37704750 -144710492 - L1ME LINE L1 -5937 697 613 1757 177 0 7 chr6 37704915 37705209 -144710033 + AluJb SINE Alu 1 292 -20 426 20 0 0 chr6 37705843 37705894 -144709348 + (TG)n Simple_repeat Simple_repeat 1 51 0 593 288 82 29 chr6 37705958 37706283 -144708959 + MERVL LTR ERVL 3330 3633 -2021 450 326 34 17 chr6 37706323 37706556 -144708686 + MERVL LTR ERVL 3739 3975 -1789 422 299 112 74 chr6 37706913 37707549 -144707693 + L1MEd LINE L1 431 1090 -5029 386 293 30 96 chr6 37708243 37708513 -144706729 + MIR SINE MIR 11 262 0 650 216 40 61 chr6 37709938 37710216 -144705026 + L1MB8 LINE L1 4140 4411 -1735 1969 204 18 26 chr6 37710218 37710709 -144704533 + L1MB8 LINE L1 4806 5292 -854 264 57 19 38 chr6 37710709 37710762 -144704480 + (TAA)n Simple_repeat Simple_repeat 3 54 0 3195 211 62 17 chr6 37710770 37711538 -144703704 + L1MB8 LINE L1 5360 6162 -16 2723 201 8 4 chr6 37712404 37712902 -144702340 + MLT1D LTR MaLR 1 500 -5 321 261 11 23 chr6 37713196 37713284 -144701958 - MLT2E LTR ERVL -510 118 32 4215 74 2 2 chr6 37713555 37714097 -144701145 - L1PA8 LINE L1 -2 6170 5629 1038 362 53 26 chr6 37715269 37716461 -144698781 + MERVL LTR ERVL 3792 5068 -696 22 35 0 0 chr6 37716584 37716613 -144698629 + AT_rich Low_complexity Low_complexity 1 29 0 4618 98 29 26 chr6 37716678 37717350 -144697892 - L1PB2 LINE L1 0 6151 5475 2227 112 0 0 chr6 37717350 37717644 -144697598 - AluY SINE Alu -17 294 1 4618 98 29 26 chr6 37717644 37717688 -144697554 - L1PB2 LINE L1 -676 5475 5433 228 227 0 0 chr6 37717695 37717739 -144697503 - L2 LINE L2 -3 3310 3267 212 361 69 21 chr6 37717935 37718226 -144697016 - L2 LINE L2 -374 2940 2636 1578 211 162 41 chr6 37719195 37719683 -144695559 + MLT1E LTR MaLR 43 589 -4 570 250 118 5 chr6 37720363 37720567 -144694675 + MIR SINE MIR 3 229 -33 229 145 0 58 chr6 37720783 37720852 -144694390 + (CATA)n Simple_repeat Simple_repeat 4 68 0 231 330 0 11 chr6 37720853 37720941 -144694301 + (CA)n Simple_repeat Simple_repeat 2 88 0 2828 29 0 0 chr6 37721432 37721743 -144693499 + AluY SINE Alu 1 311 0 327 96 0 0 chr6 37722108 37722160 -144693082 + (GGA)n Simple_repeat Simple_repeat 1 52 0 291 322 173 0 chr6 37723964 37724172 -144691070 + MIR SINE MIR 8 251 -11 669 349 79 31 chr6 37725226 37725399 -144689843 + L1M4 LINE L1 4097 4260 -1886 342 45 0 0 chr6 37725399 37725443 -144689799 + (TA)n Simple_repeat Simple_repeat 2 45 0 2191 36 0 16 chr6 37725443 37725696 -144689546 - AluY SINE Alu -6 305 57 669 349 79 31 chr6 37725696 37726332 -144688910 + L1M4 LINE L1 4259 4946 -1200 280 298 133 26 chr6 37726518 37726669 -144688573 - ERVL LTR ERVL -3801 1963 1797 209 225 0 0 chr6 37727066 37727106 -144688136 + MER5A DNA MER1_type 150 189 0 433 288 17 28 chr6 37727117 37727294 -144687948 - MER5B DNA MER1_type -3 175 1 347 260 54 39 chr6 37727457 37727661 -144687581 - LTR33 LTR ERVL -312 209 3 250 234 16 0 chr6 37727664 37727728 -144687514 + L1ME3 LINE L1 4093 4157 -1989 266 272 151 20 chr6 37727734 37728039 -144687203 + L1ME3 LINE L1 4259 4603 -1543 549 153 97 0 chr6 37728182 37728306 -144686936 + L1MB7 LINE L1 6036 6171 -13 591 313 88 25 chr6 37728314 37728793 -144686449 + L1ME3 LINE L1 5429 5937 -225 624 224 12 53 chr6 37729272 37729442 -144685800 + MER3 DNA MER1_type 19 181 -28 415 254 8 17 chr6 37730141 37730259 -144684983 - MIR SINE MIR -18 244 128 887 128 43 7 chr6 37730617 37730758 -144684484 - AluJo SINE Alu -45 267 122 2439 129 26 0 chr6 37732395 37732775 -144682467 - MLT1B LTR MaLR 0 390 1 616 221 47 47 chr6 37733819 37733991 -144681251 + MLT1G1 LTR MaLR 11 182 -413 1411 172 109 62 chr6 37734125 37734207 -144681035 - L1M4 LINE L1 -3828 2554 2477 2156 117 0 7 chr6 37734207 37734505 -144680737 - AluSg SINE Alu -14 296 1 1411 172 109 62 chr6 37734505 37734913 -144680329 - L1M4 LINE L1 -3905 2477 2043 1293 253 8 4 chr6 37734914 37735253 -144679989 - MLT2C1 LTR ERVL -99 298 1 2966 205 34 57 chr6 37735260 37735675 -144679567 - ERVL-C1 LTR ERVL -16 5748 5357 1617 179 11 21 chr6 37735675 37735994 -144679248 - AluJb SINE Alu 0 316 1 2966 205 34 57 chr6 37735994 37736352 -144678890 - ERVL-C1 LTR ERVL -407 5357 4992 1829 178 49 40 chr6 37736352 37736820 -144678422 + L1P3 LINE L1 1328 2505 -5079 * 9307 204 7 9 chr6 37736819 37738730 -144676512 + L1P3 LINE L1 2733 4638 -2946 2226 100 10 3 chr6 37738731 37739030 -144676212 - AluSq SINE Alu -12 301 1 6072 98 34 8 chr6 37739031 37739159 -144676083 + L1PA13 LINE L1 4603 4726 -1437 2135 128 0 7 chr6 37739159 37739456 -144675786 - AluSg SINE Alu -13 297 3 6072 98 34 8 chr6 37739456 37740859 -144674383 + L1PA13 LINE L1 4726 6163 0 495 226 19 0 chr6 37740862 37740968 -144674274 - ERVL LTR ERVL -3552 2212 2105 885 189 27 0 chr6 37740989 37741174 -144674068 - L1 LINE L1 -2688 4160 3971 1957 181 41 102 chr6 37741187 37741739 -144673503 - LTR10E LTR ERV1 -42 591 79 1973 100 3 63 chr6 37741739 37742068 -144673174 - AluSg SINE Alu 0 311 1 1957 181 41 102 chr6 37742068 37742143 -144673099 - LTR10E LTR ERV1 -554 79 1 13077 268 68 69 chr6 37742146 37742694 -144672548 - HERVI LTR ERV1 -1 7784 7237 5532 72 14 24 chr6 37742694 37743460 -144671782 + SVA Other Other 627 1385 -1 13077 268 68 69 chr6 37743460 37743519 -144671723 - HERVI LTR ERV1 -548 7237 7179 2118 101 47 0 chr6 37743519 37743797 -144671445 - AluSg SINE Alu -19 291 1 13077 268 68 69 chr6 37743797 37750845 -144664397 - HERVI LTR ERV1 -606 7179 26 2026 173 51 103 chr6 37750886 37751498 -144663744 - LTR10E LTR ERV1 -42 591 12 8349 214 36 21 chr6 37751508 37752656 -144662586 - L1 LINE L1 -2873 3975 2845 3786 98 2 4 chr6 37752656 37753168 -144662074 - MER9 LTR ERVK 0 511 1 8349 214 36 21 chr6 37753168 37753614 -144661628 - L1 LINE L1 -4003 2845 2407 2202 113 0 31 chr6 37753614 37753933 -144661309 + AluSc SINE Alu 1 309 0 8349 214 36 21 chr6 37753933 37755356 -144659886 - L1 LINE L1 -4441 2407 913 2057 128 3 3 chr6 37755489 37755810 -144659432 - AluSg SINE Alu 0 321 1 345 186 44 62 chr6 37755828 37755941 -144659301 + L1MA7 LINE L1 6178 6288 -3 237 295 27 9 chr6 37755967 37756079 -144659163 - L1M4c LINE L1 -4752 1632 1519 7441 48 2 0 chr6 37756334 37757466 -144657776 + L1PA5 LINE L1 5020 6153 -1 875 282 8 8 chr6 37757466 37757718 -144657524 + MLT2D LTR ERVL 14 265 -149 1369 223 6 57 chr6 37757719 37758069 -144657173 + MER21B-int LTR ERV1 2341 2672 -1519 629 218 14 27 chr6 37758069 37758216 -144657026 + MSTA LTR MaLR 1 145 -283 347 260 0 0 chr6 37758216 37758289 -144656953 + MER21B-int LTR ERV1 2667 2739 -1452 428 266 63 0 chr6 37758295 37758438 -144656804 + FRAM SINE Alu 16 167 -9 1906 261 37 37 chr6 37758448 37758760 -144656482 + MER21B-int LTR ERV1 2742 3056 -1135 4296 165 23 20 chr6 37758760 37759541 -144655701 - LTR39 LTR ERV1 0 783 1 1906 261 37 37 chr6 37759541 37759800 -144655442 + MER21B-int LTR ERV1 3055 3313 -878 2602 187 41 19 chr6 37759901 37760467 -144654775 + MER21B-int LTR ERV1 3463 4040 -151 1598 215 3 0 chr6 37760564 37760862 -144654380 + AluJo SINE Alu 1 299 -13 1759 235 17 51 chr6 37760913 37761385 -144653857 + MER21B LTR ERV1 10 465 -398 638 231 83 30 chr6 37761386 37761704 -144653538 + MSTD LTR MaLR 1 348 -17 1949 143 9 57 chr6 37761715 37762065 -144653177 + MER1B DNA MER1_type 1 333 -6 1429 191 19 78 chr6 37762100 37762683 -144652559 + MER4A LTR ERV1 1 465 0 828 265 52 29 chr6 37762696 37762968 -144652274 + MER21B LTR ERV1 505 782 -81 23 0 0 0 chr6 37763229 37763252 -144651990 + AT_rich Low_complexity Low_complexity 1 23 0 3096 142 22 54 chr6 37763636 37764229 -144651013 - MER4B LTR ERV1 -36 574 1 570 279 50 81 chr6 37764258 37764356 -144650886 + LTR67 LTR ERVL 82 182 -375 3001 157 37 55 chr6 37764356 37764979 -144650263 - LTR9 LTR ERV1 0 612 1 570 279 50 81 chr6 37764979 37765264 -144649978 + LTR67 LTR ERVL 182 453 -104 243 325 78 26 chr6 37765597 37765751 -144649491 + MER5B DNA MER1_type 1 162 -16 315 261 68 0 chr6 37765775 37765863 -144649379 + MER5A DNA MER1_type 9 102 -87 181 169 92 62 chr6 37765905 37765970 -144649272 - L3 LINE CR1 -460 1117 1051 * 2266 261 88 20 chr6 37765943 37767101 -144648141 + L2 LINE L2 2074 3311 -2 238 323 115 15 chr6 37767113 37767243 -144647999 - L3 LINE CR1 -550 1027 885 215 182 0 36 chr6 37770372 37770427 -144644815 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 884 312 64 17 chr6 37772439 37773019 -144642223 - L1MEc LINE L1 -4155 2241 1635 331 308 45 68 chr6 37773042 37773263 -144641979 - L1ME1 LINE L1 0 6166 5951 1694 266 59 38 chr6 37773328 37773991 -144641251 - L1ME1 LINE L1 -112 6448 5772 238 282 70 28 chr6 37774012 37774154 -144641088 - L1ME1 LINE L1 -1843 4697 4550 762 171 49 0 chr6 37774162 37774285 -144640957 - FLAM_C SINE Alu -4 129 1 5915 90 31 1 chr6 37774381 37775218 -144640024 + L1PA8A LINE L1 5267 6128 -3 3468 76 0 34 chr6 37775246 37775744 -144639498 + L1PA13 LINE L1 5683 6163 0 328 247 47 35 chr6 37775754 37775924 -144639318 - L1ME1 LINE L1 -3898 2642 2471 883 301 52 35 chr6 37775937 37776459 -144638783 + L1MEc LINE L1 1515 2045 -4351 384 162 0 0 chr6 37776468 37776536 -144638706 + L1P LINE L1 3148 3215 -2931 1270 224 6 32 chr6 37776823 37777135 -144638107 + AluJo SINE Alu 1 304 -8 21 0 0 0 chr6 37777161 37777182 -144638060 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr6 37777353 37777385 -144637857 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 436 246 160 37 chr6 37777420 37777607 -144637635 - HAL1 LINE L1 -2 2505 2296 664 247 185 15 chr6 37777621 37778010 -144637232 - HAL1 LINE L1 -17 2490 2036 600 213 8 8 chr6 37778106 37778228 -144637014 - FLAM_A SINE Alu -11 122 1 986 217 49 4 chr6 37778283 37778527 -144636715 - HAL1 LINE L1 -723 1784 1530 1514 166 53 25 chr6 37778530 37778813 -144636429 - AluJb SINE Alu -21 291 1 402 250 164 0 chr6 37778893 37779021 -144636221 + L2 LINE L2 2499 2647 -667 1854 116 14 3 chr6 37779105 37779389 -144635853 + AluSq SINE Alu 11 297 -16 389 340 58 0 chr6 37779780 37779968 -144635274 - L1ME LINE L1 -398 5772 5574 805 236 39 63 chr6 37781801 37782212 -144633030 - L1MC5 LINE L1 -476 7485 7085 440 263 130 31 chr6 37782239 37782743 -144632499 + L1ME3A LINE L1 5596 6161 -9 799 268 101 22 chr6 37783029 37783395 -144631847 + ERVL LTR ERVL 3880 4274 -1490 4457 196 16 46 chr6 37783704 37784036 -144631206 + L1P LINE L1 3656 3997 -2149 807 112 0 0 chr6 37784036 37784143 -144631099 + U6 snRNA snRNA 1 107 0 4457 196 16 46 chr6 37784143 37784844 -144630398 + L1P LINE L1 3997 4657 -1489 29 0 0 0 chr6 37784860 37784889 -144630353 + AT_rich Low_complexity Low_complexity 1 29 0 31 82 0 0 chr6 37785551 37785624 -144629618 + AT_rich Low_complexity Low_complexity 1 73 0 1303 140 19 1 chr6 37785624 37785904 -144629338 + L1P LINE L1 4643 4938 -1208 * 3548 241 40 25 chr6 37785886 37787022 -144628220 + L1M4c LINE L1 742 1895 -4489 2173 183 19 19 chr6 37787022 37787454 -144627788 + L1MB5 LINE L1 5743 6174 0 7703 64 32 4 chr6 37787575 37788555 -144626687 - LTR13 LTR ERVK 0 1007 1 203 261 0 0 chr6 37789171 37789217 -144626025 + (CATA)n Simple_repeat Simple_repeat 2 47 0 960 196 0 0 chr6 37789435 37789593 -144625649 - FAM SINE Alu -17 158 1 21 57 0 0 chr6 37789623 37789658 -144625584 + AT_rich Low_complexity Low_complexity 1 35 0 506 307 109 51 chr6 37789813 37790227 -144625015 - L1ME4a LINE L1 -130 5991 5554 1828 277 17 8 chr6 37790229 37791018 -144624224 - ERVL-C1 LTR ERVL -4812 952 28 317 254 68 34 chr6 37791409 37791527 -144623715 + MER58B DNA MER1_type 220 341 0 487 172 40 30 chr6 37792096 37792195 -144623047 + MIR SINE MIR 40 139 -123 287 67 44 0 chr6 37793521 37793566 -144621676 + CT-rich Low_complexity Low_complexity 2 48 0 31 44 0 0 chr6 37794920 37794965 -144620277 + AT_rich Low_complexity Low_complexity 1 45 0 259 125 0 0 chr6 37795447 37795487 -144619755 - ERVL-C1 LTR ERVL -5614 40 1 1267 219 52 7 chr6 37795489 37795527 -144619715 - MLT2C1 LTR ERVL -2 395 360 414 0 0 0 chr6 37795527 37795573 -144619669 + (TG)n Simple_repeat Simple_repeat 2 47 0 1267 219 52 7 chr6 37795573 37795803 -144619439 - MLT2C1 LTR ERVL -37 360 115 2275 213 73 28 chr6 37796721 37797299 -144617943 - MLT1E3 LTR MaLR 0 624 21 573 269 7 14 chr6 37797525 37797666 -144617576 - MLT1F1 LTR MaLR -8 559 420 * 586 340 32 3 chr6 37797657 37797966 -144617276 - LTR16B LTR ERVL -52 412 95 1323 319 53 36 chr6 37798006 37799039 -144616203 - ERVL LTR ERVL -433 5221 4171 1902 319 74 49 chr6 37799279 37800638 -144614604 - ERVL LTR ERVL -2238 3526 2134 997 314 41 7 chr6 37800665 37801079 -144614163 - ERVL LTR ERVL -2966 2030 1603 351 329 132 8 chr6 37801480 37801836 -144613406 - L1ME3A LINE L1 -211 5951 5552 458 253 207 6 chr6 37801874 37802048 -144613194 + L2 LINE L2 2042 2250 -1064 535 227 61 119 chr6 37802081 37802359 -144612883 + L1MC4a LINE L1 5513 5774 -2034 283 254 42 0 chr6 37802375 37802446 -144612796 + 7SLRNA srpRNA srpRNA 234 307 -13 311 307 18 37 chr6 37802540 37802703 -144612539 + L1MC4a LINE L1 5876 6035 -1773 24 32 0 0 chr6 37802865 37802896 -144612346 + AT_rich Low_complexity Low_complexity 1 31 0 579 170 38 0 chr6 37803650 37803756 -144611486 + MER5A DNA MER1_type 3 112 -77 741 41 0 0 chr6 37803798 37803895 -144611347 + (TC)n Simple_repeat Simple_repeat 2 98 0 4658 70 0 0 chr6 37804210 37804779 -144610463 - MER61E LTR ERV1 0 569 1 321 283 44 88 chr6 37804779 37804938 -144610304 + L2 LINE L2 3162 3313 0 2117 112 7 3 chr6 37805931 37806234 -144609008 - AluSq SINE Alu -9 304 1 21 36 0 0 chr6 37806249 37806277 -144608965 + AT_rich Low_complexity Low_complexity 1 28 0 331 251 30 90 chr6 37806683 37806787 -144608455 - L1ME LINE L1 -412 5709 5617 2236 98 0 0 chr6 37806787 37807082 -144608160 - AluSg SINE Alu -15 295 1 331 251 30 90 chr6 37807082 37807144 -144608098 - L1ME LINE L1 -504 5617 5553 2432 71 0 0 chr6 37807144 37807453 -144607789 + AluY SINE Alu 1 309 -2 477 302 91 48 chr6 37807476 37808205 -144607037 - L2 LINE L2 -3 3310 2514 1362 172 29 49 chr6 37809251 37809403 -144605839 + AluJo SINE Alu 1 145 -167 435 19 0 0 chr6 37809403 37809455 -144605787 + (CA)n Simple_repeat Simple_repeat 2 53 0 1362 172 29 49 chr6 37809455 37809610 -144605632 + AluJo SINE Alu 145 302 -10 2470 172 114 53 chr6 37810291 37810976 -144604266 - LTR8A LTR ERV1 0 727 1 24 0 0 0 chr6 37811557 37811581 -144603661 + AT_rich Low_complexity Low_complexity 1 24 0 833 203 0 0 chr6 37811581 37811739 -144603503 - FRAM SINE Alu -8 168 11 1944 174 126 20 chr6 37811788 37812248 -144602994 + LTR22 LTR ERVK 1 509 0 1840 126 0 0 chr6 37812388 37812649 -144602593 - AluSq SINE Alu -52 261 1 405 331 0 0 chr6 37812763 37812899 -144602343 + L1ME1 LINE L1 6027 6162 -4 400 244 52 113 chr6 37812908 37813138 -144602104 + L1MC4 LINE L1 7762 7977 -65 204 293 9 38 chr6 37813173 37813185 -144602057 + CT-rich Low_complexity Low_complexity 5 16 -91 2514 49 0 0 chr6 37813185 37813492 -144601750 + AluY SINE Alu 1 307 -4 204 293 9 38 chr6 37813492 37813585 -144601657 + CT-rich Low_complexity Low_complexity 16 107 0 2126 73 7 3 chr6 37814284 37814571 -144600671 + AluSp SINE Alu 1 288 -25 1091 146 6 6 chr6 37815446 37815611 -144599631 + FRAM SINE Alu 1 164 -12 602 200 50 61 chr6 37815665 37815845 -144599397 - MER5B DNA MER1_type 0 178 1 537 178 9 37 chr6 37815930 37816037 -144599205 - L1MB7 LINE L1 -17 6167 6064 222 150 0 0 chr6 37816047 37816087 -144599155 + (T)n Simple_repeat Simple_repeat 1 40 0 760 61 31 0 chr6 37816087 37816185 -144599057 - HY3 scRNA scRNA 0 101 1 9988 142 24 16 chr6 37819348 37821168 -144594074 - L1MA3 LINE L1 0 6305 4454 2255 116 3 0 chr6 37821168 37821469 -144593773 - AluSp SINE Alu -11 302 1 9988 142 24 16 chr6 37821469 37822381 -144592861 - L1MA3 LINE L1 -1851 4454 3551 2156 171 144 61 chr6 37822375 37822659 -144592583 - L1MB3 LINE L1 -1 6179 5920 * 2288 104 0 3 chr6 37822659 37822957 -144592285 + AluSq SINE Alu 5 301 -12 2156 171 144 61 chr6 37822957 37823244 -144591998 - L1MB3 LINE L1 -260 5920 5658 231 88 0 0 chr6 37823244 37823278 -144591964 + (TG)n Simple_repeat Simple_repeat 1 34 0 2156 171 144 61 chr6 37823278 37823435 -144591807 - L1MB3 LINE L1 -522 5658 5317 956 244 52 32 chr6 37823448 37823796 -144591446 - L1MB3 LINE L1 -893 5253 4899 373 280 137 11 chr6 37829061 37829243 -144585999 + MIR SINE MIR 19 223 -39 22 0 0 0 chr6 37829277 37829299 -144585943 + AT_rich Low_complexity Low_complexity 1 22 0 2497 67 3 3 chr6 37829311 37829609 -144585633 + AluSc SINE Alu 1 298 -11 2066 135 0 0 chr6 37829609 37829889 -144585353 - AluSx SINE Alu -31 281 1 222 105 0 0 chr6 37829889 37829927 -144585315 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 28 29 0 0 chr6 37829945 37829980 -144585262 + AT_rich Low_complexity Low_complexity 1 35 0 820 283 113 38 chr6 37831097 37831591 -144583651 - HAL1 LINE L1 -5 2502 2046 2180 108 0 3 chr6 37831591 37831878 -144583364 - AluSc SINE Alu -23 286 1 2333 95 10 0 chr6 37831878 37832174 -144583068 - AluSp SINE Alu -14 299 1 820 283 113 38 chr6 37832174 37832332 -144582910 - HAL1 LINE L1 -460 2047 1800 180 280 67 0 chr6 37832381 37832456 -144582786 - MER5A DNA MER1_type -85 104 25 686 209 0 16 chr6 37832486 37832615 -144582627 - AluJb SINE Alu -30 282 156 1783 204 27 77 chr6 37832680 37832750 -144582492 - L1MB2 LINE L1 -1 6170 6098 691 211 0 0 chr6 37832750 37832883 -144582359 + FLAM_C SINE Alu 1 133 0 1783 204 27 77 chr6 37832883 37833333 -144581909 - L1MB2 LINE L1 -73 6098 5676 259 133 0 83 chr6 37833701 37833761 -144581481 + MLT2B3 LTR ERVL 458 546 -8 288 324 74 33 chr6 37833766 37834260 -144580982 - L2 LINE L2 -132 3181 2666 1512 230 27 29 chr6 37834269 37834713 -144580529 - L1MB2 LINE L1 -799 5347 4905 368 176 27 0 chr6 37835640 37835714 -144579528 - MER20 DNA MER1_type -138 81 6 237 284 156 38 chr6 37836122 37836488 -144578754 + L1MC4 LINE L1 7492 7900 -142 215 170 0 19 chr6 37836515 37836568 -144578674 + (CA)n Simple_repeat Simple_repeat 1 52 0 3734 165 23 9 chr6 37836571 37837363 -144577879 - HUERS-P3 LTR ERV1 -8018 901 17 3258 153 16 59 chr6 37837379 37838019 -144577223 - LTR9 LTR ERV1 0 612 1 1018 188 0 6 chr6 37838026 37838202 -144577040 - MER41D LTR ERV1 -336 221 47 1924 148 50 18 chr6 37838212 37838550 -144576692 - L1PB2 LINE L1 -31 6120 5772 407 164 0 0 chr6 37838550 37838623 -144576619 - L1MD2 LINE L1 0 6359 6287 743 174 0 8 chr6 37838623 37838755 -144576487 + AluJo SINE Alu 4 134 -178 1611 197 37 42 chr6 37838755 37839135 -144576107 - L1MD1 LINE L1 -57 6185 5808 4880 193 8 6 chr6 37839144 37840505 -144574737 - L1PA6 LINE L1 -1 6153 4792 1674 216 3 0 chr6 37840504 37840837 -144574405 - L1MB2 LINE L1 -1896 4250 3917 * 2716 94 33 13 chr6 37840850 37841242 -144574000 + MLT2A1 LTR ERVL 1 400 -44 229 55 110 0 chr6 37841242 37841315 -144573927 + (TA)n Simple_repeat Simple_repeat 2 82 0 44 56 0 0 chr6 37841320 37841392 -144573850 + AT_rich Low_complexity Low_complexity 1 72 0 554 91 76 2 chr6 37841419 37841832 -144573410 + (TA)n Simple_repeat Simple_repeat 1 443 0 555 79 83 2 chr6 37841863 37842437 -144572805 + (TA)n Simple_repeat Simple_repeat 1 620 0 201 82 55 27 chr6 37842448 37842521 -144572721 + (TA)n Simple_repeat Simple_repeat 1 75 0 429 90 5 75 chr6 37842532 37842720 -144572522 + (TA)n Simple_repeat Simple_repeat 2 176 0 455 100 11 61 chr6 37842770 37842950 -144572292 + (TA)n Simple_repeat Simple_repeat 1 171 0 277 79 0 63 chr6 37842952 37843015 -144572227 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 619 94 59 12 chr6 37843017 37843761 -144571481 + (TA)n Simple_repeat Simple_repeat 1 778 0 358 91 18 0 chr6 37843761 37843816 -144571426 + MLT2A1 LTR ERVL 389 444 0 43881 74 13 13 chr6 37843816 37849473 -144565769 + HERVL-A1-A1 LTR ERVL 1 5654 0 3005 101 18 40 chr6 37849473 37849927 -144565315 + MLT2A1 LTR ERVL 1 444 0 7756 195 34 9 chr6 37849927 37851714 -144563528 - L1PBa LINE L1 -2234 4628 2793 2092 122 61 19 chr6 37851958 37852318 -144562924 + THE1C LTR MaLR 1 375 0 3842 102 61 88 chr6 37852318 37852992 -144562250 + THE1C-int LTR MaLR 1 656 -924 2414 79 3 0 chr6 37854476 37854767 -144560475 + AluSg SINE Alu 1 292 -18 207 219 0 0 chr6 37854792 37854833 -144560409 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 228 211 42 14 chr6 37854834 37854905 -144560337 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 212 175 18 53 chr6 37856265 37856322 -144558920 + GA-rich Low_complexity Low_complexity 1 55 0 234 62 0 0 chr6 37856352 37856384 -144558858 + (TG)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 37856978 37857115 -144558127 - L1M1 LINE L1 -671 5632 5498 239 0 32 0 chr6 37857115 37857146 -144558096 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 37857146 37858414 -144556828 - L1M1 LINE L1 -805 5498 4214 2564 168 43 111 chr6 37858417 37859085 -144556157 + MER21B LTR ERV1 218 840 -23 1532 164 8 23 chr6 37859711 37859973 -144555269 - AluJb SINE Alu -54 258 1 1831 181 0 3 chr6 37860174 37860478 -144554764 - AluJb SINE Alu -4 308 6 6347 134 48 57 chr6 37860585 37861152 -144554090 - Tigger3b DNA MER2_type -1797 1231 660 7759 29 6 0 chr6 37861152 37862222 -144553020 - L1PA3 LINE L1 0 6155 5083 6347 134 48 57 chr6 37862222 37862896 -144552346 - Tigger3b DNA MER2_type -2368 660 2 325 409 25 9 chr6 37863105 37863425 -144551817 + L1MEc LINE L1 801 1125 -5997 298 274 24 40 chr6 37863833 37863957 -144551285 + L1MEc LINE L1 1370 1491 -4932 * 345 302 67 38 chr6 37863943 37864287 -144550955 + L1M4 LINE L1 3211 3564 -2582 1628 138 11 0 chr6 37864305 37864565 -144550677 + MER2 DNA MER2_type 1 263 -82 2504 121 14 3 chr6 37864676 37865047 -144550195 + THE1C LTR MaLR 1 375 0 2319 263 90 25 chr6 37865057 37866189 -144549053 + L1M4 LINE L1 3593 4798 -1348 472 170 16 0 chr6 37866204 37866313 -144548929 - L1 LINE L1 -1079 5303 5190 808 226 30 0 chr6 37866314 37866478 -144548764 - FRAM SINE Alu -7 169 1 303 250 11 11 chr6 37866483 37866575 -144548667 - L1 LINE L1 -1191 5191 5100 * 1862 238 63 53 chr6 37866569 37866754 -144548488 - L1M4c LINE L1 -4573 2073 1891 761 138 0 14 chr6 37866754 37866892 -144548350 - L1MB2 LINE L1 -1 6170 6035 1862 238 63 53 chr6 37866892 37867404 -144547838 - L1M4c LINE L1 -4755 1891 1369 851 209 17 12 chr6 37867393 37867644 -144547598 - L1M4c LINE L1 -4719 1926 1303 * 6514 63 10 86 chr6 37867647 37868680 -144546562 - SVA Other Other 0 1386 433 986 96 20 170 chr6 37868697 37870689 -144544553 - SVA Other Other -629 866 433 319 284 167 10 chr6 37870746 37870848 -144544394 + L1MC4 LINE L1 6585 6702 -1340 401 305 0 0 chr6 37870851 37870946 -144544296 - L1MC4 LINE L1 -1339 6703 6609 2250 273 56 68 chr6 37870953 37872189 -144543053 - L1M4c LINE L1 -5320 1222 2 447 274 61 79 chr6 37872188 37872407 -144542835 - L1MEc LINE L1 -4535 1861 1653 * 472 155 52 0 chr6 37872407 37872504 -144542738 + L1MA7 LINE L1 6187 6288 -3 447 274 61 79 chr6 37872504 37872725 -144542517 - L1MEc LINE L1 -4743 1653 1429 817 256 68 8 chr6 37872884 37873134 -144542108 + MLT2D LTR ERVL 1 265 -149 1523 197 6 60 chr6 37873135 37873486 -144541756 + MER21B-int LTR ERV1 2341 2672 -1519 876 120 21 0 chr6 37873486 37873628 -144541614 + MSTA LTR MaLR 1 145 -283 383 219 0 0 chr6 37873628 37873701 -144541541 + MER21B-int LTR ERV1 2667 2739 -1452 363 295 70 0 chr6 37873707 37873836 -144541406 + FRAM SINE Alu 16 153 -13 492 194 22 72 chr6 37873846 37873985 -144541257 + MER21B-int LTR ERV1 2742 2873 -1318 2073 149 0 0 chr6 37873990 37874292 -144540950 + AluSx SINE Alu 1 302 -10 2703 237 62 43 chr6 37874343 37874684 -144540558 + MER21B-int LTR ERV1 3068 3401 -790 198 0 0 0 chr6 37874684 37874706 -144540536 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2703 237 62 43 chr6 37874706 37875319 -144539923 + MER21B-int LTR ERV1 3401 4040 -151 1506 235 0 9 chr6 37875416 37875731 -144539511 + AluJo SINE Alu 1 312 0 1256 261 11 25 chr6 37875767 37876123 -144539119 + MER21B LTR ERV1 2 352 -511 317 183 24 24 chr6 37876642 37876724 -144538518 + MER4C LTR ERV1 65 146 -319 494 337 34 4 chr6 37877539 37877803 -144537439 - LTR16B LTR ERVL -131 333 62 1459 342 40 35 chr6 37877811 37879030 -144536212 - ERVL LTR ERVL -504 5260 3693 * 1660 303 57 38 chr6 37879029 37879873 -144535369 - ERVL LTR ERVL -2240 3524 2665 253 175 0 0 chr6 37879940 37879980 -144535262 - Alu SINE Alu -19 281 242 * 255 125 0 25 chr6 37879971 37880011 -144535231 - AluSg/x SINE Alu -136 164 126 2168 109 6 13 chr6 37880011 37880324 -144534918 - AluSp SINE Alu 0 313 3 1935 293 52 47 chr6 37880335 37881308 -144533934 - ERVL LTR ERVL -2430 2566 1589 1167 321 47 20 chr6 37881364 37881806 -144533436 - ERVL LTR ERVL -3534 1462 998 1943 137 90 29 chr6 37881806 37882149 -144533093 + THE1B LTR MaLR 1 364 0 1167 321 47 20 chr6 37882149 37882300 -144532942 - ERVL LTR ERVL -3998 998 853 295 321 94 54 chr6 37882448 37882725 -144532517 - ERVL LTR ERVL -4444 552 265 636 285 72 93 chr6 37882978 37883141 -144532101 - LTR16B LTR ERVL 0 464 299 1727 134 0 0 chr6 37883141 37883380 -144531862 - AluSx SINE Alu -73 239 1 636 285 72 93 chr6 37883380 37883690 -144531552 - LTR16B LTR ERVL -165 299 1 2077 252 68 45 chr6 37883690 37884459 -144530783 - L2 LINE L2 -1658 1656 871 270 233 122 0 chr6 37884531 37884621 -144530621 - L2 LINE L2 -2411 903 803 229 228 63 0 chr6 37884723 37884802 -144530440 - L2 LINE L2 -2513 801 718 1598 265 72 19 chr6 37884831 37885415 -144529827 - MLT1E2 LTR MaLR -11 615 1 1468 282 105 14 chr6 37885422 37886043 -144529199 - L2 LINE L2 -2620 694 18 1913 131 84 6 chr6 37887270 37887613 -144527629 - Tigger1 DNA MER2_type 0 2418 2049 2242 169 10 5 chr6 37887619 37888016 -144527226 - Tigger1 DNA MER2_type -1965 453 55 215 79 26 0 chr6 37888017 37888055 -144527187 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 231 272 99 0 chr6 37888298 37888379 -144526863 + MIR SINE MIR 112 200 -62 976 143 7 60 chr6 37888652 37888873 -144526369 - MLT2A2 LTR ERVL 0 453 293 267 319 0 0 chr6 37889299 37889393 -144525849 + (TG)n Simple_repeat Simple_repeat 1 94 0 2609 68 48 0 chr6 37889675 37890011 -144525231 - THE1A LTR MaLR -3 352 1 25 0 0 0 chr6 37890444 37890469 -144524773 + AT_rich Low_complexity Low_complexity 1 25 0 948 300 40 9 chr6 37890667 37891087 -144524155 + LTR33 LTR ERVL 10 442 -79 805 173 0 0 chr6 37891206 37891333 -144523909 - FLAM_C SINE Alu -16 127 1 2571 63 0 0 chr6 37895781 37896081 -144519161 - AluY SINE Alu -11 300 1 841 203 17 6 chr6 37896539 37896716 -144518526 - MLT1B LTR MaLR 0 390 212 2521 70 0 16 chr6 37896881 37897195 -144518047 + AluY SINE Alu 1 309 -2 2773 149 2 4 chr6 37897532 37897989 -144517253 - L1MA4A LINE L1 -9 6294 5839 218 93 56 37 chr6 37898186 37898240 -144517002 + (TACTG)n Simple_repeat Simple_repeat 1 55 0 2380 54 30 3 chr6 37898299 37898596 -144516646 - AluY SINE Alu -4 307 3 352 332 121 3 chr6 37898618 37898976 -144516266 - L1ME3 LINE L1 -211 5951 5552 371 290 252 5 chr6 37898976 37899190 -144516052 + L2 LINE L2 1984 2250 -1064 491 280 76 9 chr6 37899223 37899434 -144515808 + L1MC4a LINE L1 5513 5737 -2071 378 234 71 59 chr6 37899649 37899888 -144515354 + L1MC4a LINE L1 5812 6053 -1755 37 23 0 0 chr6 37900028 37900072 -144515170 + AT_rich Low_complexity Low_complexity 1 44 0 585 170 38 0 chr6 37900820 37900926 -144514316 + MER5A DNA MER1_type 3 112 -77 297 0 0 0 chr6 37900968 37901001 -144514241 + (TC)n Simple_repeat Simple_repeat 2 34 0 4617 77 0 0 chr6 37901315 37901884 -144513358 - MER61E LTR ERV1 0 569 1 314 342 63 32 chr6 37901885 37902043 -144513199 + L2 LINE L2 3110 3272 0 1454 173 38 63 chr6 37904087 37904243 -144510999 + AluJo SINE Alu 1 146 -166 270 0 0 0 chr6 37904243 37904273 -144510969 + (CA)n Simple_repeat Simple_repeat 2 31 0 1454 173 38 63 chr6 37904273 37904434 -144510808 + AluJo SINE Alu 146 310 -2 2362 175 116 64 chr6 37905123 37905467 -144509775 - LTR8A LTR ERV1 0 727 402 2643 48 0 3 chr6 37905467 37905779 -144509463 + AluY SINE Alu 1 311 0 2362 175 116 64 chr6 37905779 37906125 -144509117 - LTR8A LTR ERV1 -325 402 1 914 192 0 0 chr6 37906726 37906882 -144508360 - FRAM SINE Alu -10 166 11 22 0 0 0 chr6 37907019 37907041 -144508201 + AT_rich Low_complexity Low_complexity 1 22 0 2113 88 0 0 chr6 37907066 37907326 -144507916 - AluSq SINE Alu -53 260 1 422 316 0 0 chr6 37907440 37907573 -144507669 + L1ME1 LINE L1 6027 6159 -7 358 242 33 121 chr6 37907597 37907812 -144507430 + L1MC4 LINE L1 7779 7974 -68 205 329 0 24 chr6 37907851 37907933 -144507309 + CT-rich Low_complexity Low_complexity 2 81 0 2451 57 13 0 chr6 37908630 37908931 -144506311 + AluSp SINE Alu 1 305 -8 196 235 25 74 chr6 37909429 37909510 -144505732 + MIR SINE MIR 22 98 -110 222 326 0 0 chr6 37909749 37909798 -144505444 - L2 LINE L2 -82 3190 3142 973 161 11 33 chr6 37909822 37910002 -144505240 + FRAM SINE Alu 1 176 0 739 251 29 11 chr6 37910061 37910236 -144505006 - MER5B DNA MER1_type 0 178 1 507 161 9 54 chr6 37910316 37910428 -144504814 - L1MB7 LINE L1 -17 6167 6061 2430 81 3 3 chr6 37910437 37910746 -144504496 - AluY SINE Alu 0 311 3 792 79 0 0 chr6 37910771 37910872 -144504370 - HY3 scRNA scRNA 0 101 1 2657 36 13 0 chr6 37912526 37912831 -144502411 - AluY SINE Alu -2 309 1 8525 138 22 12 chr6 37914365 37916119 -144499123 - L1MA3 LINE L1 0 6305 4516 2311 104 3 3 chr6 37916119 37916418 -144498824 + AluSp SINE Alu 1 299 -14 8525 138 22 12 chr6 37916418 37917394 -144497848 - L1MA3 LINE L1 -1789 4516 3551 3265 200 61 56 chr6 37917388 37918015 -144497227 - L1MB2 LINE L1 -4 6167 5544 * 417 20 0 0 chr6 37918015 37918065 -144497177 + (TG)n Simple_repeat Simple_repeat 1 50 0 3265 200 61 56 chr6 37918065 37918326 -144496916 - L1MB2 LINE L1 -627 5544 5286 2505 90 0 0 chr6 37918326 37918637 -144496605 - AluY SINE Alu 0 311 1 3265 200 61 56 chr6 37918637 37919005 -144496237 - L1MB2 LINE L1 -885 5286 4899 2307 141 25 13 chr6 37924164 37924561 -144490681 + LTR3 LTR ERVK 22 423 -9 2154 145 0 0 chr6 37924611 37924922 -144490320 - AluSx SINE Alu -1 311 1 195 114 0 0 chr6 37924922 37924957 -144490285 + (TTATA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 37924985 37925008 -144490234 + AT_rich Low_complexity Low_complexity 1 23 0 203 0 0 36 chr6 37925905 37925933 -144489309 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2583 74 0 3 chr6 37926133 37926445 -144488797 - AluY SINE Alu 0 311 1 689 276 22 65 chr6 37926484 37926839 -144488403 - L1MC5 LINE L1 -519 7442 7103 2294 103 3 0 chr6 37926840 37927142 -144488100 + AluSp SINE Alu 1 303 -10 393 282 110 38 chr6 37927257 37927466 -144487776 + L1ME3A LINE L1 5932 6155 -15 519 323 84 8 chr6 37927764 37928133 -144487109 + MERVL LTR ERVL 3836 4232 -1253 508 319 73 67 chr6 37928231 37928695 -144486547 + L1M4 LINE L1 3427 3893 -2253 2955 124 8 33 chr6 37928780 37928874 -144486368 + L1PA15 LINE L1 5694 5789 -376 2651 64 0 0 chr6 37928874 37929185 -144486057 + AluY SINE Alu 1 311 0 2955 124 8 33 chr6 37929185 37929573 -144485669 + L1PA15 LINE L1 5789 6164 -1 483 35 0 0 chr6 37929612 37929670 -144485572 + AluY SINE Alu 2 59 -259 350 216 91 0 chr6 37929670 37929758 -144485484 - L2 LINE L2 -259 3054 2959 2446 99 0 3 chr6 37931032 37931345 -144483897 - AluSx SINE Alu 0 312 1 1997 176 185 62 chr6 37931442 37931851 -144483391 + L1MD3 LINE L1 6698 7055 -940 366 226 22 12 chr6 37931851 37931943 -144483299 + MLT1F1 LTR MaLR 39 130 -443 1997 176 185 62 chr6 37931943 37932424 -144482818 + L1MD3 LINE L1 7055 7970 -25 2159 90 0 0 chr6 37932438 37932715 -144482527 - AluSx SINE Alu 0 312 36 656 161 116 9 chr6 37932761 37932873 -144482369 + FLAM_C SINE Alu 2 125 -8 409 264 50 0 chr6 37932880 37933039 -144482203 + L1M4 LINE L1 3440 3606 -2540 2318 79 7 3 chr6 37933257 37933549 -144481693 + AluSp SINE Alu 1 293 -20 2422 82 3 3 chr6 37933737 37934040 -144481202 + AluSx SINE Alu 3 305 -7 4906 204 35 47 chr6 37934459 37935229 -144480013 + L1M4 LINE L1 3613 4391 -1755 2399 92 0 0 chr6 37935229 37935522 -144479720 - AluSg SINE Alu -17 293 1 4906 204 35 47 chr6 37935522 37935927 -144479315 + L1M4 LINE L1 4391 4772 -1374 3829 124 35 52 chr6 37935927 37936094 -144479148 + L1MA8 LINE L1 5553 5721 -570 620 189 90 0 chr6 37936094 37936216 -144479026 - FLAM_A SINE Alu 0 133 1 3829 124 35 52 chr6 37936216 37936796 -144478446 + L1MA8 LINE L1 5721 6287 -4 4906 204 35 47 chr6 37936796 37936975 -144478267 + L1M4 LINE L1 4772 4952 -1194 181 390 13 0 chr6 37936980 37937057 -144478185 + MIR SINE MIR 159 236 -26 818 183 78 90 chr6 37937406 37937456 -144477786 - MSTD LTR MaLR 0 396 347 1927 148 7 3 chr6 37937456 37937754 -144477488 - AluJb SINE Alu -12 300 2 818 183 78 90 chr6 37937754 37937968 -144477274 - MSTD LTR MaLR -49 347 82 2499 90 0 0 chr6 37937968 37938269 -144476973 + AluSq SINE Alu 1 301 -12 818 183 78 90 chr6 37938269 37938331 -144476911 - MSTD LTR MaLR -314 82 21 2507 74 0 10 chr6 37938430 37938742 -144476500 - AluSc SINE Alu 0 309 1 1911 154 0 0 chr6 37939066 37939346 -144475896 + AluSx SINE Alu 1 280 -32 2442 92 0 10 chr6 37939377 37939691 -144475551 - AluSx SINE Alu -1 311 1 1542 163 119 41 chr6 37940545 37940710 -144474532 - Tigger1 DNA MER2_type 0 2418 2267 2182 108 4 0 chr6 37940710 37940988 -144474254 - AluSx SINE Alu -33 279 1 1542 163 119 41 chr6 37940988 37941184 -144474058 - Tigger1 DNA MER2_type -151 2267 2029 * 1720 188 51 30 chr6 37941179 37941572 -144473670 - Tigger1 DNA MER2_type -2017 401 1 2601 50 0 0 chr6 37941825 37942124 -144473118 + AluY SINE Alu 2 300 -11 226 203 63 13 chr6 37942918 37942997 -144472245 + (CTGGGG)n Simple_repeat Simple_repeat 2 84 0 * 241 220 0 0 chr6 37942952 37943002 -144472240 + G-rich Low_complexity Low_complexity 3 52 0 1752 142 0 51 chr6 37945900 37946195 -144469047 - AluJo SINE Alu -24 288 9 1788 181 0 3 chr6 37946323 37946611 -144468631 - AluJo SINE Alu -25 287 1 206 271 0 0 chr6 37946985 37947033 -144468209 + G-rich Low_complexity Low_complexity 1 48 0 1136 145 0 0 chr6 37947709 37947861 -144467381 - FAM SINE Alu -22 163 12 1797 161 41 3 chr6 37948077 37948369 -144466873 - AluJb SINE Alu -9 303 1 25 51 0 0 chr6 37948582 37948621 -144466621 + AT_rich Low_complexity Low_complexity 1 39 0 229 308 0 0 chr6 37949366 37949431 -144465811 + GA-rich Low_complexity Low_complexity 3 67 0 224 261 197 92 chr6 37950847 37950989 -144464253 - MIR3 SINE MIR -14 194 38 1074 145 73 0 chr6 37951033 37951212 -144464030 + AluSp SINE Alu 121 312 -1 1665 182 10 10 chr6 37951215 37951522 -144463720 + AluSx SINE Alu 1 307 -5 251 329 88 27 chr6 37951621 37951825 -144463417 + L1MC4a LINE L1 7097 7326 -482 2165 113 10 10 chr6 37951825 37952135 -144463107 + AluSx SINE Alu 1 310 -2 251 329 88 27 chr6 37952135 37952225 -144463017 + L1MC4a LINE L1 7326 7409 -399 1983 164 0 3 chr6 37952228 37952521 -144462721 - AluSx SINE Alu -14 298 7 341 143 0 0 chr6 37954073 37954129 -144461113 - AluJ SINE Alu -36 266 211 890 149 0 27 chr6 37954130 37954278 -144460964 - AluJ SINE Alu -168 144 1 2010 83 79 4 chr6 37956754 37957031 -144458211 - AluSx SINE Alu -14 298 1 240 341 167 0 chr6 37957210 37957336 -144457906 - MIR SINE MIR -64 198 52 526 256 96 45 chr6 37957507 37957667 -144457575 - L2 LINE L2 -1 3312 3139 1530 169 68 0 chr6 37957667 37957933 -144457309 + AluJo SINE Alu 5 288 -24 526 256 96 45 chr6 37957933 37957971 -144457271 - L2 LINE L2 -174 3139 3104 2316 116 0 0 chr6 37958176 37958477 -144456765 + AluSp SINE Alu 1 301 -12 596 265 51 25 chr6 37958976 37959172 -144456070 - MIR SINE MIR -13 249 49 425 216 128 88 chr6 37962784 37962932 -144452310 + MIR SINE MIR 7 160 -102 * 805 249 95 5 chr6 37962927 37963148 -144452094 - MIR SINE MIR -21 241 1 250 232 122 24 chr6 37963213 37963295 -144451947 + MIR SINE MIR 173 262 0 2154 138 10 0 chr6 37963310 37963615 -144451627 - AluSq SINE Alu -5 308 1 918 250 50 28 chr6 37963637 37963957 -144451285 + MER46C DNA MER2_type 1 327 -11 2223 119 0 3 chr6 37963983 37964278 -144450964 + AluSg SINE Alu 1 294 -16 2318 94 13 0 chr6 37964741 37965049 -144450193 - AluSp SINE Alu -1 312 1 1813 175 7 3 chr6 37965081 37965389 -144449853 - AluJo SINE Alu -3 309 1 324 255 30 62 chr6 37965400 37965579 -144449663 - MIR3 SINE MIR -68 140 7 2135 109 0 81 chr6 37965660 37965847 -144449395 - AluSx SINE Alu -14 298 146 2243 118 0 10 chr6 37965847 37966160 -144449082 - AluSx SINE Alu -2 310 1 2135 109 0 81 chr6 37966160 37966292 -144448950 - AluSx SINE Alu -166 146 5 2117 78 0 57 chr6 37966308 37966645 -144448597 - AluSc SINE Alu 0 320 1 2461 78 0 31 chr6 37966740 37967061 -144448181 - AluY SINE Alu 0 311 1 2087 111 30 20 chr6 37967097 37967395 -144447847 - AluSx SINE Alu -11 301 1 2293 101 0 7 chr6 37967711 37968017 -144447225 - AluSg1 SINE Alu -5 304 1 1764 145 13 33 chr6 37968181 37968485 -144446757 + AluJo SINE Alu 1 298 -14 275 286 198 37 chr6 37968630 37968847 -144446395 + L1MC/D LINE L1 5409 5660 -2148 2512 80 0 6 chr6 37969284 37969597 -144445645 - AluSx SINE Alu -1 311 1 1895 84 3 131 chr6 37969672 37970016 -144445226 - AluSg SINE Alu 0 300 1 2527 63 0 3 chr6 37971163 37971463 -144443779 - AluY SINE Alu -12 299 1 2032 112 16 36 chr6 37975457 37975760 -144439482 + AluSx SINE Alu 1 297 -15 298 254 172 0 chr6 37975760 37975882 -144439360 - L2 LINE L2 -21 3292 3150 232 304 228 11 chr6 37975928 37976376 -144438866 - L2 LINE L2 -975 2339 1795 37 23 0 0 chr6 37976950 37976994 -144438248 + AT_rich Low_complexity Low_complexity 1 44 0 427 230 71 59 chr6 37977134 37977373 -144437869 - L1MC4a LINE L1 -1755 6053 5812 271 289 106 24 chr6 37977588 37977796 -144437446 - L1MC4a LINE L1 -2071 5737 5513 23 0 0 0 chr6 37977934 37977957 -144437285 + AT_rich Low_complexity Low_complexity 1 23 0 238 176 0 39 chr6 37978158 37978209 -144437033 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 4314 59 52 2 chr6 37978824 37979368 -144435874 + LTR13 LTR ERVK 1 571 -436 339 243 79 34 chr6 37979468 37979645 -144435597 - L1MC4a LINE L1 -1078 5068 4884 245 315 135 0 chr6 37979810 37979921 -144435321 + L2 LINE L2 3186 3311 -2 316 336 86 10 chr6 37979972 37980493 -144434749 - L1ME4a LINE L1 -183 5938 5378 908 84 8 0 chr6 37980506 37980637 -144434605 + (TTC)n Simple_repeat Simple_repeat 1 132 0 541 169 0 0 chr6 37980637 37980720 -144434522 - AluJ SINE Alu -33 279 197 806 165 0 0 chr6 37980734 37980861 -144434381 - AluJ SINE Alu -175 127 1 303 347 53 15 chr6 37981099 37981364 -144433878 - L1ME4a LINE L1 -2075 4071 3797 915 129 0 7 chr6 37981508 37981655 -144433587 - L1MA6 LINE L1 -6 6294 6149 273 338 58 17 chr6 37981766 37982006 -144433236 + L1M4 LINE L1 3808 4057 -2089 207 170 0 38 chr6 37982222 37982275 -144432967 + T-rich Low_complexity Low_complexity 5 55 0 281 268 27 27 chr6 37982306 37982418 -144432824 - L1ME4a LINE L1 -3078 3068 2957 330 219 21 0 chr6 37982810 37982906 -144432336 - L1MA6 LINE L1 -242 6058 5961 1360 186 18 46 chr6 37982910 37983190 -144432052 - MSTD LTR MaLR -124 272 1 1313 292 31 21 chr6 37983202 37983627 -144431615 - LTR16A LTR ERVL -4 446 18 586 306 58 5 chr6 37983628 37983834 -144431408 - MIR SINE MIR -12 250 34 364 308 62 41 chr6 38084374 38084569 -144330673 - MIR SINE MIR -10 252 54 26 30 0 0 chr6 38085664 38085697 -144329545 + GC_rich Low_complexity Low_complexity 1 33 0 184 211 26 0 chr6 38085986 38086024 -144329218 + MIR SINE MIR 109 147 -61 2085 110 7 19 chr6 38086028 38086141 -144329101 + AluSx SINE Alu 1 114 -198 1856 92 4 0 chr6 38086141 38086391 -144328851 + AluSg1 SINE Alu 16 266 -43 2085 110 7 19 chr6 38086391 38086586 -144328656 + AluSx SINE Alu 114 305 -7 1026 95 19 6 chr6 38086586 38086744 -144328498 + AluSg/x SINE Alu 132 291 -19 186 147 0 29 chr6 38086745 38086779 -144328463 + MIR3 SINE MIR 145 177 -31 1696 102 4 4 chr6 38087921 38088165 -144327077 - AluSq SINE Alu -5 308 65 2126 124 10 0 chr6 38088664 38088971 -144326271 - AluSx SINE Alu -2 310 1 522 148 0 0 chr6 38089174 38089255 -144325987 - AluJo SINE Alu -14 298 218 488 181 0 86 chr6 38089252 38089301 -144325941 - AluJo SINE Alu -130 182 130 * 2292 79 0 0 chr6 38089301 38089591 -144325651 - AluY SINE Alu -21 290 1 488 181 0 86 chr6 38089591 38089657 -144325585 - AluJo SINE Alu -182 130 77 612 191 22 52 chr6 38089847 38089983 -144325259 + FLAM_C SINE Alu 1 132 -1 2238 95 0 3 chr6 38089990 38090296 -144324946 + AluSg SINE Alu 1 305 -5 1433 126 5 14 chr6 38090406 38090541 -144324701 + AluSx SINE Alu 1 135 -177 2414 70 3 0 chr6 38090541 38090842 -144324400 + AluY SINE Alu 1 302 -9 1433 126 5 14 chr6 38090842 38090921 -144324321 + AluSx SINE Alu 135 213 -99 25 0 0 0 chr6 38090921 38090946 -144324296 + AT_rich Low_complexity Low_complexity 1 25 0 1090 163 16 0 chr6 38090946 38091130 -144324112 + AluSg/x SINE Alu 118 304 -6 2134 125 0 3 chr6 38091448 38091752 -144323490 + AluSx SINE Alu 1 303 -9 806 160 0 8 chr6 38091801 38091926 -144323316 + AluJo SINE Alu 13 136 -176 2148 129 0 0 chr6 38091935 38092245 -144322997 + AluSg SINE Alu 1 310 0 1972 99 46 30 chr6 38092250 38092553 -144322689 + AluSc SINE Alu 1 308 -1 2069 99 0 7 chr6 38092566 38092876 -144322366 + AluSg SINE Alu 1 308 0 439 169 24 6 chr6 38093182 38093431 -144321811 + AluJo SINE Alu 1 293 -19 2092 125 3 0 chr6 38093519 38093815 -144321427 - AluSx SINE Alu -15 297 1 648 213 0 44 chr6 38093857 38093993 -144321249 + FLAM_C SINE Alu 1 130 -13 2094 137 0 0 chr6 38094016 38094322 -144320920 + AluSg1 SINE Alu 1 306 -3 340 317 112 0 chr6 38094333 38094494 -144320748 + MIR SINE MIR 54 232 -30 828 75 0 0 chr6 38094571 38094678 -144320564 - AluSc SINE Alu -202 107 1 2455 80 0 0 chr6 38094690 38095001 -144320241 - AluY SINE Alu 0 311 1 1712 167 31 14 chr6 38095008 38095295 -144319947 - AluJb SINE Alu -20 292 1 2162 102 7 0 chr6 38095305 38095598 -144319644 - AluSg SINE Alu -15 295 1 898 197 0 0 chr6 38095736 38095888 -144319354 - FRAM SINE Alu -11 155 4 29 0 0 0 chr6 38097171 38097200 -144318042 + AT_rich Low_complexity Low_complexity 1 29 0 2109 113 3 0 chr6 38097238 38097540 -144317702 + AluSx SINE Alu 1 303 -9 1642 125 156 0 chr6 38097541 38097797 -144317445 + AluSq SINE Alu 1 296 -7 785 177 48 7 chr6 38097804 38097951 -144317291 + FRAM SINE Alu 20 172 -4 2171 99 0 0 chr6 38098266 38098550 -144316692 - AluSc SINE Alu -25 284 1 2268 98 10 0 chr6 38098764 38099069 -144316173 + AluSq SINE Alu 1 308 -5 2307 56 0 7 chr6 38099318 38099604 -144315638 + AluY SINE Alu 1 284 -27 405 0 0 0 chr6 38099604 38099649 -144315593 + (CA)n Simple_repeat Simple_repeat 2 46 0 1560 170 7 20 chr6 38102170 38102320 -144312922 - AluJo SINE Alu -16 296 150 1997 76 52 31 chr6 38102320 38102610 -144312632 - AluSx SINE Alu -16 296 1 1560 170 7 20 chr6 38102610 38102759 -144312483 - AluJo SINE Alu -162 150 1 1668 175 88 25 chr6 38102768 38102957 -144312285 - L1MB2 LINE L1 -2 6169 5993 1523 191 10 13 chr6 38102957 38103260 -144311982 - AluJb SINE Alu -10 302 1 1668 175 88 25 chr6 38103260 38103443 -144311799 - L1MB2 LINE L1 -178 5993 5758 2028 129 0 13 chr6 38103443 38103745 -144311497 - AluSx SINE Alu -14 298 1 1668 175 88 25 chr6 38103745 38103851 -144311391 - L1MB2 LINE L1 -413 5758 5660 1555 65 0 56 chr6 38104264 38104495 -144310747 + AluY SINE Alu 1 218 -93 1288 56 6 0 chr6 38104495 38104657 -144310585 + AluY SINE Alu 131 293 -18 310 246 26 26 chr6 38105029 38105143 -144310099 + FLAM_C SINE Alu 16 129 -4 235 319 21 0 chr6 38105177 38105271 -144309971 - L1ME4a LINE L1 -71 6050 5955 1962 69 9 129 chr6 38105290 38105623 -144309619 + AluSg SINE Alu 1 293 -7 206 229 238 9 chr6 38105692 38105797 -144309445 + L2 LINE L2 3182 3310 -3 401 263 132 0 chr6 38105823 38105937 -144309305 + MIR3 SINE MIR 43 171 -37 336 256 150 44 chr6 38106760 38106940 -144308302 + MIR SINE MIR 64 262 0 * 370 328 16 68 chr6 38106882 38107132 -144308110 - MIR SINE MIR -24 238 2 1262 120 0 5 chr6 38107755 38107939 -144307303 - AluSg/x SINE Alu -1 311 129 1314 159 45 0 chr6 38107964 38108184 -144307058 + AluJo SINE Alu 1 230 -82 264 263 179 0 chr6 38108254 38108349 -144306893 - L1ME3A LINE L1 -32 6138 6027 1983 120 10 3 chr6 38110801 38111092 -144304150 - AluSq SINE Alu -17 296 4 708 249 35 0 chr6 38111897 38112066 -144303176 + MER5A DNA MER1_type 15 189 0 216 345 33 72 chr6 38113107 38113319 -144301923 - L2 LINE L2 -1417 1897 1701 2427 86 0 3 chr6 38113319 38113633 -144301609 + AluSq SINE Alu 1 313 0 216 345 33 72 chr6 38113633 38113753 -144301489 - L2 LINE L2 -1613 1701 1578 458 263 66 15 chr6 38113756 38113893 -144301349 - MIR SINE MIR -98 164 21 257 220 0 17 chr6 38113902 38113961 -144301281 + G-rich Low_complexity Low_complexity 4 61 0 380 315 204 0 chr6 38115103 38115265 -144299977 - MER91A DNA MER1_type 0 196 2 874 208 33 6 chr6 38115559 38115742 -144299500 - MER53 DNA DNA -1 188 1 546 221 0 18 chr6 38116579 38116692 -144298550 + MIR SINE MIR 41 151 -111 2319 60 10 3 chr6 38116693 38116991 -144298251 + AluY SINE Alu 1 300 -11 1013 198 12 0 chr6 38117069 38117241 -144298001 + FAM SINE Alu 1 174 -1 581 258 88 88 chr6 38117242 38117358 -144297884 + L1MC5 LINE L1 6616 6731 -1230 1901 79 0 0 chr6 38117358 38117599 -144297643 + AluSg SINE Alu 56 296 -14 581 258 88 88 chr6 38117599 38117913 -144297329 + L1MC5 LINE L1 6730 7046 -915 204 333 35 11 chr6 38118657 38118744 -144296498 + L2 LINE L2 3021 3109 -163 * 258 286 18 45 chr6 38118741 38118853 -144296389 + MIR SINE MIR 10 118 -144 392 338 69 0 chr6 38118918 38119063 -144296179 + L2 LINE L2 3118 3272 0 444 161 0 0 chr6 38120981 38121062 -144294180 + CT-rich Low_complexity Low_complexity 2 82 0 269 280 93 47 chr6 38121258 38121408 -144293834 + L1ME3A LINE L1 5794 5950 -220 245 286 27 54 chr6 38121445 38121592 -144293650 + L1MD3 LINE L1 7416 7558 -437 476 229 115 19 chr6 38121595 38121752 -144293490 + L1MC5 LINE L1 7312 7483 -478 1949 118 31 0 chr6 38121753 38122041 -144293201 - AluSq SINE Alu -14 299 3 678 186 50 7 chr6 38122077 38122217 -144293025 + AluSq/x SINE Alu 2 147 -166 1446 125 13 9 chr6 38122337 38122581 -144292661 + AluSg/x SINE Alu 73 310 0 885 261 77 34 chr6 38122600 38122624 -144292618 + L1MC5 LINE L1 7490 7512 -449 2226 81 7 10 chr6 38122624 38122921 -144292321 - AluSp SINE Alu -17 296 1 885 261 77 34 chr6 38122921 38123313 -144291929 + L1MC5 LINE L1 7512 7924 -37 2078 101 0 17 chr6 38123636 38123933 -144291309 + AluSx SINE Alu 1 292 -20 1516 182 44 51 chr6 38124826 38125006 -144290236 + L1MB3 LINE L1 5654 5834 -349 1385 171 49 31 chr6 38125006 38125292 -144289950 - AluJo SINE Alu -21 291 1 1516 182 44 51 chr6 38125292 38125645 -144289597 + L1MB3 LINE L1 5834 6133 -50 1709 110 0 30 chr6 38125645 38125818 -144289424 - AluSx SINE Alu -9 303 139 2089 105 10 10 chr6 38125818 38126123 -144289119 - AluSq SINE Alu -8 305 1 1709 110 0 30 chr6 38126123 38126213 -144289029 - AluSx SINE Alu -173 139 48 272 85 0 0 chr6 38126316 38126363 -144288879 + Tigger7 DNA MER2_type 2325 2371 -120 1291 152 100 15 chr6 38126424 38126693 -144288549 + LTR23 LTR ERV1 1 292 -145 22 35 0 0 chr6 38126708 38126737 -144288505 + AT_rich Low_complexity Low_complexity 1 29 0 269 143 41 0 chr6 38126746 38126795 -144288447 - MER66A LTR ERV1 -144 334 284 792 185 15 0 chr6 38126856 38126986 -144288256 + FLAM_C SINE Alu 1 132 -1 629 145 35 35 chr6 38126993 38127138 -144288104 + LTR23 LTR ERV1 293 437 0 237 306 96 19 chr6 38127366 38127523 -144287719 + L2 LINE L2 3145 3313 0 197 229 0 37 chr6 38129923 38129981 -144285261 + MIR SINE MIR 19 71 -137 1757 147 10 19 chr6 38130032 38130339 -144284903 - AluSx SINE Alu -8 304 1 2342 76 3 0 chr6 38130346 38130647 -144284595 - AluSg SINE Alu -8 302 1 712 94 0 0 chr6 38130651 38130747 -144284495 - AluSp/q SINE Alu -12 301 206 832 146 70 6 chr6 38130783 38130954 -144284288 - MLT1C LTR MaLR -285 182 1 514 123 37 0 chr6 38131013 38131094 -144284148 - AluJb SINE Alu -201 111 28 844 221 39 54 chr6 38131113 38131413 -144283829 - L2 LINE L2 -239 3074 2784 2136 117 3 0 chr6 38132909 38133208 -144282034 - AluSx SINE Alu -8 304 5 282 261 141 60 chr6 38138250 38138434 -144276808 - MIR3 SINE MIR -9 199 1 197 307 104 25 chr6 38141793 38141956 -144273286 + L2 LINE L2 2122 2297 -1017 404 316 0 0 chr6 38143264 38143416 -144271826 + (TCTCTG)n Simple_repeat Simple_repeat 5 156 0 1772 160 0 35 chr6 38144135 38144447 -144270795 - AluJb SINE Alu -3 309 9 1963 130 0 48 chr6 38144465 38144632 -144270610 - AluSx SINE Alu -12 300 153 2409 41 10 0 chr6 38144632 38144924 -144270318 - AluY SINE Alu -16 295 1 1963 130 0 48 chr6 38144924 38145071 -144270171 - AluSx SINE Alu -159 153 1 224 337 102 0 chr6 38145201 38145299 -144269943 - MIR3 SINE MIR -6 202 95 242 326 54 8 chr6 38146798 38146927 -144268315 - L2 LINE L2 -1060 2254 2120 192 346 0 30 chr6 38148441 38148542 -144266700 + MER5B DNA MER1_type 1 98 -80 319 318 11 0 chr6 38149490 38149578 -144265664 - MER91B DNA MER1_type -2 188 100 355 336 0 31 chr6 38149578 38149706 -144265536 - MER91B DNA MER1_type -55 135 12 460 310 0 0 chr6 38153136 38153249 -144261993 + MIR SINE MIR 14 126 -136 354 307 96 57 chr6 38153250 38153533 -144261709 + L1MB8 LINE L1 5311 5581 -597 2262 100 0 3 chr6 38153533 38153843 -144261399 + AluSc SINE Alu 1 309 0 354 307 96 57 chr6 38153843 38154152 -144261090 + L1MB8 LINE L1 5581 5933 -245 242 327 18 36 chr6 38154295 38154405 -144260837 + MIR SINE MIR 130 237 -25 1650 183 0 31 chr6 38154780 38155097 -144260145 - AluJb SINE Alu -1 311 5 292 231 214 34 chr6 38155199 38155316 -144259926 - MIR3 SINE MIR -16 192 55 186 167 0 0 chr6 38156105 38156141 -144259101 + CT-rich Low_complexity Low_complexity 2 37 0 282 49 0 0 chr6 38156243 38156284 -144258958 + AluSp/q SINE Alu 256 296 -7 2035 82 44 0 chr6 38156318 38156626 -144258616 - AluSx SINE Alu 0 321 2 2223 104 3 0 chr6 38156627 38156926 -144258316 - AluSg SINE Alu -6 304 5 539 302 88 0 chr6 38156926 38157131 -144258111 - MIR SINE MIR -37 225 3 248 246 87 0 chr6 38157763 38157832 -144257410 - MER116 DNA Mariner 0 80 6 730 158 0 0 chr6 38159623 38159737 -144255505 + AluSg/x SINE Alu 187 300 -9 2250 87 7 3 chr6 38159737 38160035 -144255207 + AluSq SINE Alu 1 299 -14 1261 201 121 35 chr6 38160119 38160523 -144254719 + MLT1J LTR MaLR 1 439 -72 740 257 93 51 chr6 38160613 38160775 -144254467 + MLT1I LTR MaLR 108 285 -124 2288 91 0 0 chr6 38160775 38161073 -144254169 + AluSx SINE Alu 1 298 -14 740 257 93 51 chr6 38161073 38161147 -144254095 + MLT1I LTR MaLR 285 354 -55 956 233 12 33 chr6 38161327 38161572 -144253670 - MLT1H LTR MaLR -296 253 14 464 301 174 17 chr6 38161881 38162117 -144253125 + MLT1J LTR MaLR 239 511 0 2372 63 0 3 chr6 38162268 38162571 -144252671 + AluY SINE Alu 1 302 -9 2373 63 3 22 chr6 38162579 38162895 -144252347 + AluY SINE Alu 1 310 -1 2196 111 0 13 chr6 38163492 38163808 -144251434 - AluSx SINE Alu 0 312 1 1194 231 165 18 chr6 38164159 38164558 -144250684 + LTR16C LTR ERVL 19 476 -15 1057 237 4 4 chr6 38164584 38164812 -144250430 - MIR SINE MIR -33 229 2 304 295 83 68 chr6 38166444 38166841 -144248401 + L1MC4a LINE L1 5665 6067 -1741 2058 99 0 40 chr6 38166923 38167226 -144248016 + AluSx SINE Alu 1 291 -21 2161 87 10 0 chr6 38167231 38167520 -144247722 + AluSg SINE Alu 1 292 -18 292 356 10 0 chr6 38167607 38167711 -144247531 + MIR SINE MIR 49 153 -109 936 161 0 13 chr6 38167713 38167868 -144247374 + FRAM SINE Alu 5 157 -19 1790 173 0 0 chr6 38167870 38168190 -144247052 + AluJo SINE Alu 1 320 0 195 241 107 18 chr6 38168281 38168393 -144246849 - L2 LINE L2 -257 3056 2935 443 185 0 0 chr6 38169402 38169483 -144245759 + MIR SINE MIR 113 193 -69 264 244 126 50 chr6 38169711 38169830 -144245412 - L2 LINE L2 0 3313 3186 2468 41 0 0 chr6 38169871 38170165 -144245077 - AluY SINE Alu -17 294 1 320 293 35 17 chr6 38170394 38170510 -144244732 - MER91A DNA MER1_type -15 181 64 300 270 111 0 chr6 38170778 38170904 -144244338 - MIR3 SINE MIR -62 146 7 406 0 0 0 chr6 38171035 38171080 -144244162 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 1410 169 7 75 chr6 38171080 38171375 -144243867 - AluJo SINE Alu -1 327 9 554 252 7 14 chr6 38171378 38171521 -144243721 + MIR SINE MIR 121 262 0 2156 87 21 0 chr6 38171763 38172051 -144243191 + AluSx SINE Alu 4 297 -15 197 171 0 0 chr6 38172060 38172095 -144243147 - L2 LINE L2 -17 3255 3221 1562 188 34 7 chr6 38172124 38172422 -144242820 - AluJb SINE Alu 0 312 7 1776 125 7 56 chr6 38172483 38172787 -144242455 + AluSg SINE Alu 1 289 -21 869 248 40 52 chr6 38172834 38172967 -144242275 - L1MC5 LINE L1 -30 7931 7798 2247 92 0 3 chr6 38172967 38173262 -144241980 - AluSq SINE Alu -16 297 4 869 248 40 52 chr6 38173262 38173455 -144241787 - L1MC5 LINE L1 -163 7798 7609 401 219 219 0 chr6 38174633 38174738 -144240504 + MER45A DNA AcHobo 47 174 -4 2157 90 10 13 chr6 38175500 38175812 -144239430 + AluSx SINE Alu 1 311 -1 340 298 139 29 chr6 38175893 38176091 -144239151 - MIR SINE MIR -34 228 15 2302 74 7 0 chr6 38176351 38176649 -144238593 + AluSx SINE Alu 1 300 -12 997 173 15 50 chr6 38176749 38176951 -144238291 + AluJo SINE Alu 29 223 -89 670 146 14 69 chr6 38176951 38177095 -144238147 + AluSc SINE Alu 164 299 -10 22 0 0 0 chr6 38177468 38177490 -144237752 + GC_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 38177543 38177570 -144237672 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 38177881 38177903 -144237339 + GC_rich Low_complexity Low_complexity 1 22 0 2251 88 0 0 chr6 38178861 38179158 -144236084 + AluSx SINE Alu 5 301 -11 293 198 38 2 chr6 38179481 38179541 -144235701 + MER57A LTR ERV1 295 348 -55 213 167 24 0 chr6 38179587 38179629 -144235613 + MIR SINE MIR 92 134 -128 30 0 0 0 chr6 38179804 38179834 -144235408 + AT_rich Low_complexity Low_complexity 1 30 0 2134 111 0 0 chr6 38179834 38180123 -144235119 - AluSq SINE Alu -24 289 1 1733 161 3 17 chr6 38180662 38180960 -144234282 + AluJo SINE Alu 1 294 -18 864 143 0 8 chr6 38180995 38181128 -144234114 + FLAM_C SINE Alu 1 132 -1 191 305 211 0 chr6 38181219 38181314 -144233928 + MIR3 SINE MIR 89 203 -5 2164 119 0 10 chr6 38182365 38182675 -144232567 + AluSq SINE Alu 1 307 -6 1306 177 73 7 chr6 38182828 38183116 -144232126 + AluJb SINE Alu 1 307 -5 376 175 0 0 chr6 38183122 38183185 -144232057 - AluJb SINE Alu -35 267 205 1525 164 3 42 chr6 38183190 38183352 -144231890 - AluJb SINE Alu -13 299 153 2324 86 7 3 chr6 38183352 38183656 -144231586 - AluSq SINE Alu -8 305 1 1525 164 3 42 chr6 38183656 38183804 -144231438 - AluJb SINE Alu -159 153 1 2084 133 46 20 chr6 38183804 38183880 -144231362 + Tigger1 DNA MER2_type 2014 2087 -331 2166 114 3 3 chr6 38183880 38184188 -144231054 + AluSx SINE Alu 1 308 -4 2084 133 46 20 chr6 38184188 38184502 -144230740 + Tigger1 DNA MER2_type 2087 2414 -4 473 195 123 0 chr6 38184567 38184803 -144230439 - L1ME3A LINE L1 -214 5956 5594 1690 150 36 0 chr6 38184809 38185089 -144230153 - AluJb SINE Alu -10 302 13 799 132 0 59 chr6 38185114 38185250 -144229992 - FLAM_C SINE Alu -1 132 5 1506 148 7 24 chr6 38185256 38185383 -144229859 - L1M3 LINE L1 -573 5607 5479 2351 85 0 0 chr6 38185383 38185689 -144229553 - AluSg SINE Alu -4 306 1 1506 148 7 24 chr6 38185689 38185851 -144229391 - L1M3 LINE L1 -701 5479 5323 229 130 65 0 chr6 38185851 38185897 -144229345 - AluJb SINE Alu -8 293 245 1027 140 34 17 chr6 38186065 38186243 -144228999 - AluJb SINE Alu -45 267 87 787 211 110 25 chr6 38186243 38186397 -144228845 + Charlie2 DNA MER1_type 2475 2615 -247 2300 103 0 0 chr6 38186397 38186709 -144228533 + AluSx SINE Alu 1 312 0 2046 105 0 3 chr6 38186716 38187037 -144228205 + AluSx SINE Alu 1 320 0 787 211 110 25 chr6 38187037 38187229 -144228013 + Charlie2 DNA MER1_type 2620 2860 -2 326 112 24 208 chr6 38187281 38187328 -144227914 - MER5A DNA MER1_type -84 105 51 2249 93 36 0 chr6 38187328 38187629 -144227613 - AluSx SINE Alu 0 312 1 841 103 15 37 chr6 38187635 38187771 -144227471 - FLAM_C SINE Alu 0 133 1 326 112 24 208 chr6 38187771 38187841 -144227401 - MER5A DNA MER1_type -143 46 4 326 278 11 0 chr6 38187850 38187940 -144227302 - L1ME LINE L1 -523 5647 5557 216 277 117 52 chr6 38187988 38188219 -144227023 + L2 LINE L2 1917 2162 -1152 2256 107 3 3 chr6 38188257 38188567 -144226675 + AluSx SINE Alu 1 310 -2 904 155 0 0 chr6 38188613 38188755 -144226487 + FLAM_C SINE Alu 1 142 -1 302 201 0 174 chr6 38188756 38188814 -144226428 + MLT2C1 LTR ERVL 17 83 -314 614 231 15 15 chr6 38188814 38188944 -144226298 - FLAM_A SINE Alu -3 130 1 302 201 0 174 chr6 38188944 38188995 -144226247 + MLT2C1 LTR ERVL 83 96 -301 1967 133 0 32 chr6 38188995 38189311 -144225931 + AluSq SINE Alu 1 306 -7 302 201 0 174 chr6 38189311 38189349 -144225893 + MLT2C1 LTR ERVL 96 139 -258 2058 107 24 0 chr6 38189349 38189639 -144225603 - AluSg SINE Alu -13 297 1 1578 114 83 19 chr6 38189640 38189904 -144225338 - AluSc SINE Alu -20 289 9 2100 93 23 3 chr6 38190256 38190556 -144224686 + AluSg SINE Alu 1 306 -4 209 276 0 26 chr6 38191264 38191340 -144223902 + CT-rich Low_complexity Low_complexity 2 75 0 702 263 13 36 chr6 38191969 38192193 -144223049 - L2 LINE L2 -3 3310 3092 620 279 76 0 chr6 38192800 38192972 -144222270 - MER91A DNA MER1_type 0 196 12 1786 157 3 22 chr6 38194735 38195047 -144220195 - AluJb SINE Alu -6 306 1 2218 89 0 13 chr6 38195136 38195440 -144219802 - AluSx SINE Alu 0 312 13 1348 130 0 5 chr6 38195557 38195772 -144219470 - AluSq SINE Alu -99 214 1 34 24 0 0 chr6 38195776 38195817 -144219425 + AT_rich Low_complexity Low_complexity 1 41 0 1984 135 0 3 chr6 38195827 38196123 -144219119 + AluSx SINE Alu 1 295 -17 1878 149 7 0 chr6 38196176 38196472 -144218770 + AluSx SINE Alu 1 298 -14 554 233 15 53 chr6 38196487 38196620 -144218622 - FLAM_A SINE Alu -5 128 1 5247 74 33 55 chr6 38196652 38197610 -144217632 + SVA Other Other 25 868 -636 5630 78 32 15 chr6 38197720 38198564 -144216678 - SVA Other Other -520 866 9 693 286 42 16 chr6 38198566 38198844 -144216398 - L1ME LINE L1 -465 5701 5411 27 49 0 0 chr6 38200049 38200090 -144215152 + AT_rich Low_complexity Low_complexity 1 41 0 1971 123 7 0 chr6 38200138 38200457 -144214785 + AluSq SINE Alu 1 321 0 246 293 83 22 chr6 38200659 38200809 -144214433 + MIR SINE MIR 24 183 -79 1846 107 56 0 chr6 38200867 38201169 -144214073 - AluSx SINE Alu 0 317 1 2080 125 0 3 chr6 38201906 38202217 -144213025 - AluSg SINE Alu 0 310 1 1870 112 3 25 chr6 38202373 38202658 -144212584 + AluSx SINE Alu 30 308 -4 345 346 132 0 chr6 38202853 38203058 -144212184 + MIR SINE MIR 20 251 -11 447 92 0 0 chr6 38203061 38203126 -144212116 + (TA)n Simple_repeat Simple_repeat 2 66 0 1865 129 0 46 chr6 38203126 38203281 -144211961 - AluSx SINE Alu -24 288 152 2228 82 24 0 chr6 38203281 38203575 -144211667 - AluSp SINE Alu -12 301 1 1865 129 0 46 chr6 38203575 38203721 -144211521 - AluSx SINE Alu -160 152 1 195 42 0 0 chr6 38204130 38204154 -144211088 + (T)n Simple_repeat Simple_repeat 1 24 0 627 231 8 8 chr6 38204257 38204374 -144210868 - FRAM SINE Alu -59 117 1 38 0 0 20 chr6 38204384 38204401 -144210841 + AT_rich Low_complexity Low_complexity 1 17 -31 1904 130 3 23 chr6 38204401 38204702 -144210540 - AluSx SINE Alu -17 295 1 38 0 0 20 chr6 38204702 38204733 -144210509 + AT_rich Low_complexity Low_complexity 17 48 0 240 314 141 0 chr6 38204788 38204909 -144210333 + MIR SINE MIR 121 258 -4 189 107 0 0 chr6 38204920 38204948 -144210294 + (CAT)n Simple_repeat Simple_repeat 3 30 0 878 236 78 14 chr6 38205785 38206045 -144209197 - MLT1C LTR MaLR -4 589 187 499 214 4 61 chr6 38206457 38206686 -144208556 + SVA Other Other 574 789 -597 6738 60 5 43 chr6 38206703 38207695 -144207547 + SVA Other Other 433 1386 0 615 209 26 40 chr6 38207702 38207895 -144207347 - LTR24B LTR ERV1 -40 595 374 4450 125 51 32 chr6 38207896 38209095 -144206147 - pTR5 LTR ERV1 -171 2267 743 1682 106 144 35 chr6 38209096 38209437 -144205805 - LTR24B LTR ERV1 -195 381 4 1804 128 3 35 chr6 38209768 38210057 -144205185 - AluJb SINE Alu -15 297 18 206 32 32 0 chr6 38210136 38210167 -144205075 + (CAA)n Simple_repeat Simple_repeat 1 32 0 315 56 0 74 chr6 38210221 38210275 -144204967 - Alu SINE Alu -5 303 257 23 0 0 0 chr6 38210644 38210667 -144204575 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 38210701 38210722 -144204520 + GC_rich Low_complexity Low_complexity 1 21 0 219 146 0 0 chr6 38210761 38210802 -144204440 + (CCG)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr6 38210809 38210840 -144204402 + GC_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 38213472 38213517 -144201725 + GC_rich Low_complexity Low_complexity 1 45 0 2060 88 24 3 chr6 38215493 38215788 -144199454 - AluY SINE Alu -10 301 1 618 202 34 0 chr6 38215788 38215907 -144199335 - AluJo/FRAM SINE Alu -10 302 180 1457 104 46 8 chr6 38215909 38216149 -144199093 - AluSc SINE Alu -5 304 56 1170 201 148 11 chr6 38216218 38216481 -144198761 - AluJb SINE Alu -1 301 3 768 121 14 71 chr6 38216609 38216750 -144198492 - AluSq/x SINE Alu -178 134 2 1287 142 93 19 chr6 38217545 38217856 -144197386 - MSTA LTR MaLR -64 364 1 231 127 73 18 chr6 38217856 38217910 -144197332 - AluSq/x SINE Alu -191 112 56 1801 133 31 0 chr6 38217929 38218215 -144197027 - AluSg SINE Alu -15 295 1 1553 134 161 8 chr6 38218226 38218487 -144196755 - AluSx SINE Alu 0 302 2 1258 155 9 122 chr6 38218489 38218678 -144196564 - AluJb SINE Alu -14 298 162 1972 100 7 47 chr6 38218678 38218979 -144196263 + AluSx SINE Alu 5 293 -19 1258 155 9 122 chr6 38218979 38219125 -144196117 - AluJb SINE Alu -150 162 1 1839 154 83 0 chr6 38219125 38219450 -144195792 - L1PA16 LINE L1 -11 6155 5804 1833 117 20 37 chr6 38219752 38220051 -144195191 + AluSc SINE Alu 1 294 -15 1848 109 0 66 chr6 38220193 38220496 -144194746 - AluSq SINE Alu -30 283 1 1034 198 75 4 chr6 38220550 38220777 -144194465 - AluSx SINE Alu -17 295 53 1702 141 10 21 chr6 38220983 38221273 -144193969 - AluY SINE Alu -18 293 7 1891 109 11 4 chr6 38221353 38221627 -144193615 - AluSc SINE Alu -32 277 2 1985 79 48 7 chr6 38221628 38221919 -144193323 - AluY SINE Alu -8 303 1 1644 104 52 0 chr6 38221919 38222168 -144193074 - AluSp SINE Alu -17 296 35 1661 111 49 62 chr6 38222423 38222549 -144192693 + AluSx SINE Alu 6 132 -180 2201 48 4 0 chr6 38222549 38222818 -144192424 + AluY SINE Alu 14 283 -28 2066 110 0 14 chr6 38222822 38223112 -144192130 + AluSq SINE Alu 1 286 -27 189 0 0 0 chr6 38223112 38223133 -144192109 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1661 111 49 62 chr6 38223133 38223288 -144191954 + AluSx SINE Alu 133 289 -23 805 113 52 0 chr6 38223421 38223536 -144191706 - AluSq/x SINE Alu -191 121 1 1524 192 14 7 chr6 38223541 38223698 -144191544 - AluJo SINE Alu -18 294 133 2260 101 0 0 chr6 38223698 38223994 -144191248 - AluY SINE Alu -15 296 1 1524 192 14 7 chr6 38223994 38224128 -144191114 - AluJo SINE Alu -179 133 1 1799 203 108 0 chr6 38224451 38224875 -144190367 - L1ME3 LINE L1 0 6162 5693 6952 56 6 35 chr6 38224875 38225860 -144189382 - SVA Other Other 0 1386 430 5483 62 24 1 chr6 38225888 38226634 -144188608 - SVA Other Other -572 814 52 1905 117 13 30 chr6 38226774 38226934 -144188308 - AluSx SINE Alu -18 294 140 2268 77 3 26 chr6 38226934 38227244 -144187998 - AluY SINE Alu -8 303 1 1905 117 13 30 chr6 38227244 38227382 -144187860 - AluSx SINE Alu -172 140 1 1968 135 20 0 chr6 38227386 38227683 -144187559 - AluSx SINE Alu -9 303 1 1347 167 59 42 chr6 38227745 38228032 -144187210 - AluJo SINE Alu -20 292 1 223 238 12 12 chr6 38228757 38228841 -144186401 + GA-rich Low_complexity Low_complexity 3 86 0 791 227 7 0 chr6 38228993 38229147 -144186095 - AluJb SINE Alu -156 156 2 1552 170 17 17 chr6 38229177 38229465 -144185777 + AluJb SINE Alu 7 294 -18 618 241 0 0 chr6 38229468 38229584 -144185658 - FLAM_A SINE Alu -17 116 1 2500 46 10 0 chr6 38229783 38230089 -144185153 - AluY SINE Alu -2 309 1 1459 256 35 14 chr6 38230341 38230767 -144184475 + L2 LINE L2 2414 2848 -466 448 102 0 0 chr6 38230767 38230826 -144184416 + AluSq/x SINE Alu 62 120 -192 1950 145 0 3 chr6 38231035 38231331 -144183911 + AluSx SINE Alu 1 295 -17 937 126 0 15 chr6 38231492 38231627 -144183615 + FLAM_C SINE Alu 1 133 0 300 267 137 7 chr6 38231640 38231786 -144183456 + L1MEd LINE L1 951 1115 -5004 2099 108 3 3 chr6 38231798 38232093 -144183149 - AluSg SINE Alu -15 295 1 437 176 0 24 chr6 38232288 38232373 -144182869 - AluJb SINE Alu -32 280 198 23 0 0 0 chr6 38232380 38232403 -144182839 + AT_rich Low_complexity Low_complexity 1 23 0 1405 181 51 14 chr6 38232811 38233103 -144182139 + AluJo SINE Alu 1 303 -9 1749 155 4 0 chr6 38233316 38233593 -144181649 + AluJo SINE Alu 13 290 -22 881 95 16 0 chr6 38233603 38233729 -144181513 + AluSq/x SINE Alu 5 132 -180 2099 114 0 7 chr6 38233732 38234038 -144181204 + AluSc SINE Alu 1 304 -5 1235 206 0 114 chr6 38234447 38234797 -144180445 - AluSx SINE Alu -2 310 1 1909 132 17 0 chr6 38234934 38235230 -144180012 - AluJb SINE Alu -11 301 1 326 346 13 38 chr6 38235307 38235466 -144179776 - MER5A DNA MER1_type 0 189 35 233 321 151 20 chr6 38235716 38236015 -144179227 + L2 LINE L2 2153 2490 -824 1328 144 28 12 chr6 38242400 38242650 -144172592 - L1PA16 LINE L1 -107 6059 5806 2225 105 3 0 chr6 38242747 38243053 -144172189 - AluSx SINE Alu -5 307 1 678 156 25 25 chr6 38243053 38243175 -144172067 - AluSg/x SINE Alu -7 302 181 500 351 51 16 chr6 38243194 38243361 -144171881 + LTR16C LTR ERVL 166 326 -165 2329 95 0 0 chr6 38243361 38243665 -144171577 - AluSx SINE Alu -8 304 1 500 351 51 16 chr6 38243665 38243810 -144171432 + LTR16C LTR ERVL 326 489 -2 1094 238 102 56 chr6 38244043 38244434 -144170808 + MLT1I LTR MaLR 1 409 0 184 308 241 8 chr6 38244746 38244879 -144170363 - L2 LINE L2 -572 2742 2579 219 36 0 0 chr6 38245003 38245031 -144170211 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2298 46 0 4 chr6 38245031 38245311 -144169931 - AluY SINE Alu -32 279 1 2405 74 0 0 chr6 38245334 38245631 -144169611 - AluSg SINE Alu -13 297 1 453 61 45 0 chr6 38245631 38245697 -144169545 - MLT2C2 LTR ERVL -201 263 195 1936 131 24 0 chr6 38249098 38249396 -144165846 + AluSx SINE Alu 1 305 -7 2005 94 3 49 chr6 38249999 38250307 -144164935 + AluSx SINE Alu 1 294 -18 2097 113 7 3 chr6 38250314 38250614 -144164628 + AluSq SINE Alu 1 301 -12 274 157 78 0 chr6 38250624 38250675 -144164567 + L1MB5 LINE L1 6042 6096 -78 692 113 0 0 chr6 38250675 38250772 -144164470 + AluJb SINE Alu 211 307 -5 2373 75 0 0 chr6 38251346 38251651 -144163591 + AluSg SINE Alu 1 305 -5 1067 82 89 0 chr6 38252438 38252596 -144162646 + AluJb SINE Alu 136 307 -5 1664 154 32 4 chr6 38253971 38254250 -144160992 - AluJo SINE Alu -19 293 7 2184 114 3 0 chr6 38254559 38254866 -144160376 - AluSx SINE Alu -4 308 1 2325 97 3 0 chr6 38255247 38255558 -144159684 + AluSx SINE Alu 1 312 0 2062 80 3 53 chr6 38255888 38256190 -144159052 - AluSp SINE Alu -20 293 7 201 74 0 0 chr6 38256723 38256750 -144158492 + (T)n Simple_repeat Simple_repeat 1 27 0 1447 124 5 0 chr6 38256951 38257168 -144158074 + AluSg/x SINE Alu 86 303 -9 781 62 0 0 chr6 38257171 38257268 -144157974 + AluSg SINE Alu 2 98 -212 1883 66 8 4 chr6 38257268 38257511 -144157731 + AluSg SINE Alu 54 297 -13 201 39 0 0 chr6 38259388 38259414 -144155828 + (TCTCCC)n Simple_repeat Simple_repeat 2 27 0 4159 75 16 20 chr6 38261394 38261944 -144153298 - LTR14 LTR ERVK 0 548 1 4155 2 0 2 chr6 38261944 38262462 -144152780 - HERVKC4 LTR ERVK 0 5262 4746 419 148 0 0 chr6 38362462 38362523 -144052719 - AluS SINE Alu -249 62 2 2314 87 0 7 chr6 38362527 38362827 -144052415 - AluSg1 SINE Alu -11 298 1 1046 281 46 9 chr6 38362856 38363205 -144052037 - L1MB8 LINE L1 -2 6176 5815 676 234 0 0 chr6 38363233 38363370 -144051872 - L1PB4 LINE L1 0 6156 6020 412 224 0 0 chr6 38363370 38363446 -144051796 - U1 snRNA snRNA -87 78 3 1376 231 20 3 chr6 38363451 38363750 -144051492 - L1MB8 LINE L1 -343 5823 5520 1868 160 0 0 chr6 38363823 38364116 -144051126 + AluSg SINE Alu 8 300 -10 186 173 40 0 chr6 38364511 38364586 -144050656 + (TA)n Simple_repeat Simple_repeat 2 79 0 459 288 132 51 chr6 38364869 38365202 -144050040 + MLT1L LTR MaLR 246 605 -10 708 116 16 31 chr6 38365861 38365990 -144049252 - L1MA8 LINE L1 -4 6287 6161 345 244 9 70 chr6 38367559 38367674 -144047568 - MIR SINE MIR -135 127 20 545 280 101 14 chr6 38368572 38368779 -144046463 + MIR SINE MIR 1 225 -37 23 0 0 0 chr6 38369421 38369444 -144045798 + AT_rich Low_complexity Low_complexity 1 23 0 904 137 3 8 chr6 38370428 38370449 -144044793 + L1P2 LINE L1 5685 5705 -461 2794 53 0 0 chr6 38370449 38370771 -144044471 - L1PA5 LINE L1 -8 6146 5825 904 137 3 8 chr6 38370771 38370902 -144044340 + L1PA5 LINE L1 5705 5835 -331 303 71 0 0 chr6 38370923 38370965 -144044277 + (TC)n Simple_repeat Simple_repeat 2 43 0 249 33 0 0 chr6 38370965 38370995 -144044247 + (CA)n Simple_repeat Simple_repeat 1 30 0 322 308 71 98 chr6 38371936 38372298 -144042944 - L2 LINE L2 -251 3062 2715 201 265 0 0 chr6 38372467 38372516 -144042726 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 863 189 43 18 chr6 38372995 38373159 -144042083 - MER20 DNA MER1_type -7 212 45 355 177 15 5 chr6 38373940 38374062 -144041180 + MER53 DNA DNA 1 189 0 293 0 27 0 chr6 38375208 38375245 -144039997 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7630 33 0 0 chr6 38375245 38376433 -144038809 - L1PA5 LINE L1 -16 6138 4935 4917 58 0 0 chr6 38376437 38377053 -144038189 + L1PA5 LINE L1 4316 4931 -1215 822 318 105 56 chr6 38377157 38377976 -144037266 + L2 LINE L2 1813 2590 -723 2130 115 0 0 chr6 38377976 38378262 -144036980 + AluY SINE Alu 1 286 -25 822 318 105 56 chr6 38378262 38378345 -144036897 + L2 LINE L2 2590 2667 -646 2177 124 0 3 chr6 38378345 38378643 -144036599 + AluSq SINE Alu 3 299 -14 822 318 105 56 chr6 38378643 38379153 -144036089 + L2 LINE L2 2667 3295 -18 1624 190 10 0 chr6 38379399 38379689 -144035553 + AluJb SINE Alu 3 295 -17 284 208 14 0 chr6 38379966 38380038 -144035204 + MER116 DNA Mariner 2 74 -6 204 333 161 23 chr6 38381392 38381566 -144033676 + MIR3 SINE MIR 7 204 -4 22 0 0 0 chr6 38381946 38381968 -144033274 + AT_rich Low_complexity Low_complexity 1 22 0 382 362 70 18 chr6 38382382 38382611 -144032631 - MIR SINE MIR -19 243 3 197 0 71 0 chr6 38382809 38382837 -144032405 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 5792 195 88 33 chr6 38383616 38384990 -144030252 + MER52A LTR ERV1 385 1755 0 1970 123 32 95 chr6 38384991 38385311 -144029931 + THE1C LTR MaLR 1 339 -36 2200 117 0 28 chr6 38385311 38385449 -144029793 + AluSc SINE Alu 2 142 -167 2311 96 0 7 chr6 38385449 38385750 -144029492 + AluSp SINE Alu 1 299 -14 2200 117 0 28 chr6 38385750 38385928 -144029314 + AluSc SINE Alu 142 309 0 1970 123 32 95 chr6 38385928 38385939 -144029303 + THE1C LTR MaLR 339 349 -26 2296 95 0 22 chr6 38385939 38386254 -144028988 - AluSc SINE Alu -1 308 1 1970 123 32 95 chr6 38386254 38386321 -144028921 + THE1C LTR MaLR 349 375 0 1106 237 58 28 chr6 38386872 38387197 -144028045 + LTR43 LTR ERV1 131 465 -137 189 330 108 22 chr6 38388062 38388247 -144026995 + MIR SINE MIR 36 236 -26 21 0 0 0 chr6 38388453 38388474 -144026768 + AT_rich Low_complexity Low_complexity 1 21 0 1190 195 23 27 chr6 38388565 38388826 -144026416 - L1MC2 LINE L1 -25 6319 6060 2277 176 36 25 chr6 38388828 38389271 -144025971 + LOR1b LTR ERV1 4 451 -10 278 135 0 0 chr6 38389271 38389308 -144025934 + LOR1a LTR ERV1 461 497 0 2635 180 19 2 chr6 38389310 38389793 -144025449 - L1MC2 LINE L1 -282 6062 5572 1900 126 11 4 chr6 38389794 38390072 -144025170 + AluSc SINE Alu 4 283 -26 3065 182 47 0 chr6 38390107 38390678 -144024564 - L1MC2 LINE L1 -282 6456 5859 7909 39 0 1 chr6 38390700 38391891 -144023351 + L1PA4 LINE L1 4963 6152 -3 399 264 24 8 chr6 38391905 38392030 -144023212 - L1MD3 LINE L1 0 7995 7869 1938 67 14 4 chr6 38392055 38392311 -144022931 - HERV9 LTR ERV1 -162 8237 504 20991 113 10 9 chr6 38392342 38395362 -144019880 - HERV9 LTR ERV1 -5260 3139 117 313 308 18 6 chr6 38395374 38395543 -144019699 - L1MC2 LINE L1 -847 5693 5523 192 40 0 0 chr6 38395554 38395579 -144019663 + (TG)n Simple_repeat Simple_repeat 2 26 0 1267 122 0 0 chr6 38395579 38395750 -144019492 - AluY SINE Alu -12 299 126 260 223 19 68 chr6 38395985 38396088 -144019154 - L1MC2 LINE L1 -1202 5338 5241 733 124 0 0 chr6 38396091 38396188 -144019054 - AluSp SINE Alu -202 111 15 2281 281 26 7 chr6 38396192 38397099 -144018143 - L1MC2 LINE L1 -2996 3544 2620 1963 105 7 14 chr6 38397099 38397384 -144017858 + LTR12 LTR ERV1 5 287 -427 311 181 0 42 chr6 38397386 38397458 -144017784 + LTR30 LTR ERV1 556 624 -98 627 153 28 11 chr6 38397458 38397602 -144017640 + pTR5 LTR ERV1 52 614 -100 2718 199 90 21 chr6 38397603 38398250 -144016992 - L1MC2 LINE L1 -3912 2628 1908 1757 191 0 0 chr6 38398250 38398559 -144016683 + AluJb SINE Alu 1 309 -3 2718 199 90 21 chr6 38398559 38398758 -144016484 - L1MC2 LINE L1 -4632 1908 1724 1030 49 0 0 chr6 38398760 38398883 -144016359 + AluY SINE Alu 175 297 -14 532 237 40 56 chr6 38398885 38399083 -144016159 - L1MC2 LINE L1 -4854 1686 1492 1099 316 41 21 chr6 38399099 38399662 -144015580 + L1M4 LINE L1 3365 3938 -2208 2032 122 10 3 chr6 38399687 38399991 -144015251 + AluSp SINE Alu 1 306 -7 258 314 52 12 chr6 38400135 38400307 -144014935 + L1M4 LINE L1 4148 4326 -1820 465 115 0 0 chr6 38400314 38400375 -144014867 + MSTB LTR MaLR 1 61 -365 1038 242 42 36 chr6 38400380 38400830 -144014412 - L1M4 LINE L1 -3113 3033 2581 21 36 0 0 chr6 38401187 38401215 -144014027 + AT_rich Low_complexity Low_complexity 1 28 0 929 289 39 11 chr6 38402293 38402649 -144012593 - L1MB8 LINE L1 -2 6176 5811 593 244 7 0 chr6 38402658 38402793 -144012449 - L1PB4 LINE L1 0 6156 6021 471 195 0 0 chr6 38402793 38402870 -144012372 - U1 snRNA snRNA -86 79 3 1286 238 23 20 chr6 38402875 38403178 -144012064 - L1MB8 LINE L1 -343 5823 5520 2196 89 0 17 chr6 38403439 38403731 -144011511 - AluY SINE Alu -24 287 1 355 306 117 10 chr6 38404288 38404494 -144010748 + MLT1L LTR MaLR 312 539 -76 2363 95 0 0 chr6 38405084 38405389 -144009853 + AluY SINE Alu 1 305 -6 694 137 8 23 chr6 38405507 38405638 -144009604 - L1MA8 LINE L1 -4 6287 6159 188 65 0 32 chr6 38405671 38405702 -144009540 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 387 0 0 0 chr6 38405747 38405790 -144009452 + (TTA)n Simple_repeat Simple_repeat 3 45 0 11500 89 15 1 chr6 38405790 38408082 -144007160 - L1PA7 LINE L1 -18 6136 3825 14460 30 0 1 chr6 38408346 38410071 -144005171 - L1PA3 LINE L1 -2356 3790 2067 14021 33 2 0 chr6 38410071 38412407 -144002835 + L1PA3 LINE L1 3817 6154 -1 317 271 52 48 chr6 38412407 38412617 -144002625 + L1MEc LINE L1 1438 1648 -4748 2107 118 23 10 chr6 38412861 38413166 -144002076 - AluSp SINE Alu -4 309 1 2471 80 0 0 chr6 38413397 38413698 -144001544 + AluSc SINE Alu 1 301 -8 342 238 0 25 chr6 38414490 38414570 -144000672 - MIR SINE MIR -135 127 50 492 323 99 10 chr6 38415509 38415710 -143999532 + MIR SINE MIR 6 224 -38 2229 95 0 7 chr6 38415873 38416193 -143999049 + AluY SINE Alu 1 318 0 250 363 47 32 chr6 38416194 38416384 -143998858 - MIR SINE MIR -19 243 51 792 167 49 0 chr6 38417010 38417154 -143998088 + AluJb SINE Alu 162 312 0 1825 143 87 0 chr6 38417157 38417495 -143997747 + AluSq SINE Alu 1 363 0 5782 197 64 63 chr6 38418205 38419645 -143995597 + MER52A LTR ERV1 387 1755 0 1831 128 30 36 chr6 38419646 38419983 -143995259 + THE1C LTR MaLR 1 335 -40 373 138 15 0 chr6 38420196 38420261 -143994981 + LTR60 LTR ERV1 1 66 -520 949 258 52 25 chr6 38420388 38420714 -143994528 + LTR43 LTR ERV1 131 465 -137 233 335 108 22 chr6 38421574 38421759 -143993483 + MIR SINE MIR 36 236 -26 26731 39 1 1 chr6 38421885 38425718 -143989524 + L1PA3 LINE L1 3 3830 -2316 9654 36 0 0 chr6 38425718 38427584 -143987658 + L1PA3 LINE L1 4287 6152 -3 1201 197 19 26 chr6 38427797 38428061 -143987181 - L1MC2 LINE L1 -23 6321 6060 2055 170 29 29 chr6 38428099 38428510 -143986732 + LOR1b LTR ERV1 41 451 -10 2416 169 24 53 chr6 38428551 38428746 -143986496 - L1MC2 LINE L1 -284 6060 5861 2369 94 0 3 chr6 38428746 38429055 -143986187 + AluSg SINE Alu 1 308 -2 2416 169 24 53 chr6 38429055 38429368 -143985874 - L1MC2 LINE L1 -483 5861 5567 1568 155 76 11 chr6 38429368 38429632 -143985610 + MER51A LTR ERV1 1 281 -353 3895 192 59 9 chr6 38429917 38430148 -143985094 - L1MC2 LINE L1 -25 6319 6101 1943 194 38 70 chr6 38430148 38430236 -143985006 + LOR1b LTR ERV1 1 90 -371 2170 94 3 20 chr6 38430236 38430533 -143984709 - AluSg SINE Alu -18 292 1 1943 194 38 70 chr6 38430533 38430919 -143984323 + LOR1b LTR ERV1 90 460 -1 3895 192 59 9 chr6 38430919 38431501 -143983741 - L1MC2 LINE L1 -243 6101 5465 3474 227 77 69 chr6 38431513 38431995 -143983247 - L1MD2 LINE L1 -1 6752 6275 2297 81 0 0 chr6 38431995 38432311 -143982931 - AluY SINE Alu 0 316 1 3474 227 77 69 chr6 38432311 38433217 -143982025 - L1MD2 LINE L1 -478 6275 5323 2283 70 13 20 chr6 38433217 38433517 -143981725 - AluSg SINE Alu -12 298 1 3474 227 77 69 chr6 38433517 38434185 -143981057 - L1MD2 LINE L1 -1430 5323 4662 4486 249 66 24 chr6 38434193 38434243 -143980999 - L1MD2 LINE L1 -2079 4461 4415 2414 68 0 0 chr6 38434243 38434536 -143980706 - AluY SINE Alu -18 293 1 4486 249 66 24 chr6 38434536 38435385 -143979857 - L1MD2 LINE L1 -2125 4415 3603 2160 132 3 0 chr6 38435385 38435689 -143979553 - AluSp SINE Alu -8 305 1 4486 249 66 24 chr6 38435689 38437052 -143978190 - L1MD2 LINE L1 -2937 3603 2122 262 211 0 66 chr6 38437052 38437128 -143978114 + MER77 LTR ERV1 109 179 -426 * 385 288 76 70 chr6 38437119 38437540 -143977702 + MER21B LTR ERV1 98 531 -74 1542 217 113 40 chr6 38437540 38437727 -143977515 - L1MD2 LINE L1 -4411 2129 1957 1678 184 13 3 chr6 38437727 38438032 -143977210 + AluJb SINE Alu 1 308 -4 1542 217 113 40 chr6 38438032 38438255 -143976987 - L1MD2 LINE L1 -4583 1957 1752 2094 81 46 3 chr6 38438255 38438538 -143976704 + AluY SINE Alu 1 295 -16 1542 217 113 40 chr6 38438538 38438721 -143976521 - L1MD2 LINE L1 -4788 1752 1492 894 300 80 16 chr6 38438733 38439220 -143976022 + L1M4 LINE L1 3336 3853 -2293 238 293 64 21 chr6 38439235 38439423 -143975819 + L1M4 LINE L1 4133 4328 -1818 2201 163 44 10 chr6 38439423 38439828 -143975414 + MSTB LTR MaLR 1 419 -7 953 269 54 40 chr6 38439875 38440429 -143974813 - L1M4 LINE L1 -3005 3141 2580 21 36 0 0 chr6 38440789 38440817 -143974425 + AT_rich Low_complexity Low_complexity 1 28 0 257 298 44 25 chr6 38441540 38441698 -143973544 - L1P5 LINE L1 -686 5468 5308 2397 47 7 13 chr6 38441729 38442028 -143973214 - AluY SINE Alu -14 297 1 2398 90 0 0 chr6 38442150 38442461 -143972781 - AluY SINE Alu 0 311 1 2209 118 7 3 chr6 38442556 38442860 -143972382 + AluSx SINE Alu 1 305 -7 981 276 68 6 chr6 38442866 38443206 -143972036 - L1MB7 LINE L1 -9 6175 5815 604 207 0 62 chr6 38443230 38443375 -143971867 - L1PB4 LINE L1 0 6156 6021 453 208 0 0 chr6 38443375 38443452 -143971790 - U1 snRNA snRNA -86 79 3 1164 251 23 20 chr6 38443457 38443760 -143971482 - L1MB7 LINE L1 -343 5823 5520 2335 77 0 10 chr6 38444008 38444306 -143970936 - AluY SINE Alu -16 295 1 311 139 42 56 chr6 38444552 38444624 -143970618 - LTR66 LTR ERVL -171 439 369 720 126 42 0 chr6 38449400 38449519 -143965723 - L1MA8 LINE L1 -4 6287 6164 2195 108 10 10 chr6 38449617 38449924 -143965318 - AluSc SINE Alu -2 307 1 2383 73 3 0 chr6 38450860 38451149 -143964093 - AluY SINE Alu -21 290 1 305 336 66 7 chr6 38451675 38451812 -143963430 - MIR SINE MIR -68 194 50 2563 61 40 0 chr6 38452692 38453018 -143962224 + LTR14A LTR ERVK 6 344 0 2390 142 3 3 chr6 38453020 38453380 -143961862 + HERVK14 LTR ERVK 3 362 -5583 9923 50 3 0 chr6 38454958 38456127 -143959115 + HERVK14 LTR ERVK 1828 2999 -2946 * 11415 61 16 10 chr6 38456126 38457561 -143957681 + HERVK14 LTR ERVK 4416 5859 -86 2922 35 21 3 chr6 38457580 38457918 -143957324 + LTR14A LTR ERVK 1 344 0 381 291 103 12 chr6 38457992 38458157 -143957085 + MIR SINE MIR 8 187 -75 1915 151 3 0 chr6 38458290 38458582 -143956660 + AluSg SINE Alu 1 293 -17 2250 98 0 14 chr6 38459262 38459557 -143955685 - AluY SINE Alu -20 291 1 23 0 0 0 chr6 38459826 38459849 -143955393 + AT_rich Low_complexity Low_complexity 1 23 0 336 325 75 86 chr6 38461405 38461762 -143953480 - L2 LINE L2 -251 3062 2715 2244 118 7 0 chr6 38461797 38462103 -143953139 - AluSx SINE Alu -4 308 1 2004 91 8 0 chr6 38462158 38462421 -143952821 + AluSc SINE Alu 32 296 -13 221 265 0 0 chr6 38462514 38462563 -143952679 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 673 206 37 101 chr6 38463041 38463087 -143952155 - MER20 DNA MER1_type -7 212 165 2534 71 3 0 chr6 38463087 38463397 -143951845 - AluY SINE Alu 0 311 1 673 206 37 101 chr6 38463397 38463539 -143951703 - MER20 DNA MER1_type -54 165 36 378 146 15 5 chr6 38464300 38464422 -143950820 + MER53 DNA DNA 1 189 0 2290 103 0 6 chr6 38464554 38464865 -143950377 + AluY SINE Alu 1 309 -2 186 289 113 21 chr6 38465056 38465198 -143950044 + MIR SINE MIR 90 244 -18 974 308 114 62 chr6 38465954 38466849 -143948393 + L2 LINE L2 1813 2808 -505 1828 129 68 10 chr6 38466849 38467144 -143948098 + AluSq SINE Alu 1 312 -1 974 308 114 62 chr6 38467144 38467677 -143947565 + L2 LINE L2 2808 3312 -1 1481 199 14 3 chr6 38467903 38468190 -143947052 + AluJb SINE Alu 3 292 -20 257 221 13 0 chr6 38468467 38468544 -143946698 + MER116 DNA Mariner 2 79 -1 2262 115 3 0 chr6 38468653 38468957 -143946285 - AluSg SINE Alu -5 305 1 10468 157 23 41 chr6 38469980 38470018 -143945224 - L1P LINE L1 -4208 1938 1901 6949 59 5 5 chr6 38470018 38471615 -143943627 - L1PA6 LINE L1 -5 6149 4522 10468 157 23 41 chr6 38471615 38473526 -143941716 - L1P LINE L1 -4245 1901 25 2064 134 0 0 chr6 38474050 38474348 -143940894 + AluY SINE Alu 1 298 -13 23 0 0 0 chr6 38474576 38474599 -143940643 + AT_rich Low_complexity Low_complexity 1 23 0 273 381 35 17 chr6 38474933 38475106 -143940136 - MIR SINE MIR -19 243 68 2143 207 65 11 chr6 38475140 38475618 -143939624 - LTR22 LTR ERVK -5 504 1 815 149 57 0 chr6 38476677 38476929 -143938313 + AluJb SINE Alu 163 422 0 4675 184 141 62 chr6 38477252 38478532 -143936710 + MER52A LTR ERV1 371 1751 -4 2016 152 29 37 chr6 38478539 38478915 -143936327 + THE1C LTR MaLR 3 375 0 349 138 15 0 chr6 38479261 38479326 -143935916 + LTR60 LTR ERV1 1 66 -520 961 256 46 14 chr6 38479505 38479786 -143935456 + LTR43 LTR ERV1 173 462 -140 510 161 0 0 chr6 38480376 38480463 -143934779 - AluSc SINE Alu -3 306 220 1959 129 7 0 chr6 38480519 38480805 -143934437 + AluSc SINE Alu 21 308 -1 233 335 113 27 chr6 38481094 38481279 -143933963 + MIR SINE MIR 36 236 -26 1260 178 34 34 chr6 38481591 38481860 -143933382 - L1MC2 LINE L1 -16 6328 6060 2119 193 33 38 chr6 38481860 38481924 -143933318 + LOR1b LTR ERV1 2 65 -396 2200 87 0 7 chr6 38481924 38482241 -143933001 - AluY SINE Alu 0 311 1 2119 193 33 38 chr6 38482241 38482628 -143932614 + LOR1b LTR ERV1 65 451 -10 245 171 0 0 chr6 38482628 38482663 -143932579 + LOR1a LTR ERV1 461 495 -2 2803 173 19 0 chr6 38482667 38483154 -143932088 - L1MC2 LINE L1 -282 6062 5567 1749 109 79 19 chr6 38483154 38483419 -143931823 + MER51A LTR ERV1 1 281 -353 21 0 0 0 chr6 38483607 38483628 -143931614 + AT_rich Low_complexity Low_complexity 1 21 0 4482 172 33 14 chr6 38483715 38483972 -143931270 - L1MC2 LINE L1 -25 6319 6068 2049 200 61 25 chr6 38483972 38484417 -143930825 + LOR1b LTR ERV1 1 461 0 4482 172 33 14 chr6 38484417 38484998 -143930244 - L1MC2 LINE L1 -276 6068 5465 3663 232 83 48 chr6 38485011 38486180 -143929062 - L1MD2 LINE L1 -2 6357 5231 209 33 33 0 chr6 38486180 38486210 -143929032 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3663 232 83 48 chr6 38486210 38486401 -143928841 - L1MD2 LINE L1 -1128 5231 5048 200 57 0 29 chr6 38486401 38486436 -143928806 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3663 232 83 48 chr6 38486436 38487072 -143928170 - L1MD2 LINE L1 -1311 5048 4268 2146 279 55 8 chr6 38487080 38487193 -143928049 - L1MD2 LINE L1 -2079 4067 3961 216 0 0 0 chr6 38487193 38487217 -143928025 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2146 279 55 8 chr6 38487217 38487936 -143927306 - L1MD2 LINE L1 -2185 3961 3196 305 269 159 14 chr6 38487936 38488144 -143927098 - L1M4 LINE L1 -2713 3433 3196 1742 94 13 0 chr6 38488155 38488388 -143926854 - AluSp SINE Alu -4 309 74 6827 84 13 12 chr6 38488388 38489307 -143925935 + HERV9 LTR ERV1 5560 6479 -1920 7230 55 19 18 chr6 38489307 38490334 -143924908 - SVA Other Other -839 1384 432 1757 97 9 0 chr6 38490334 38490562 -143924680 - AluSq SINE Alu -83 230 1 362 320 67 17 chr6 38490743 38490921 -143924321 - L1MC2 LINE L1 -650 5471 5285 1106 275 42 6 chr6 38491112 38491468 -143923774 - L1MB8 LINE L1 -2 6176 5808 630 248 0 0 chr6 38491480 38491617 -143923625 - L1PB4 LINE L1 0 6156 6020 421 224 0 0 chr6 38491617 38491693 -143923549 - U1 snRNA snRNA -87 78 3 1238 245 24 3 chr6 38491698 38491996 -143923246 - L1MB8 LINE L1 -343 5823 5520 1852 162 3 0 chr6 38492056 38492352 -143922890 + AluSg SINE Alu 1 297 -13 318 277 0 32 chr6 38492737 38492831 -143922411 - L1MC4 LINE L1 -1339 6703 6613 482 308 93 24 chr6 38492838 38493127 -143922115 + MLT1L LTR MaLR 231 539 -76 647 180 16 0 chr6 38493859 38493981 -143921261 - L1MA8 LINE L1 -4 6287 6164 2380 87 0 13 chr6 38494694 38495006 -143920236 - AluSg SINE Alu -2 308 1 287 241 11 46 chr6 38495879 38495966 -143919276 - MIR SINE MIR -129 133 50 515 280 69 16 chr6 38496905 38497094 -143918148 + MIR SINE MIR 8 206 -56 23 0 0 0 chr6 38497748 38497771 -143917471 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr6 38498010 38498060 -143917182 + AT_rich Low_complexity Low_complexity 1 50 0 8085 28 1 0 chr6 38498133 38499313 -143915929 + L1PA4 LINE L1 4973 6153 -2 297 0 0 0 chr6 38499959 38499992 -143915250 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 405 0 0 0 chr6 38499991 38500036 -143915206 + (CA)n Simple_repeat Simple_repeat 1 45 0 324 393 83 8 chr6 38501037 38501279 -143913963 - L2 LINE L2 -340 2974 2715 399 290 110 40 chr6 38501488 38501915 -143913327 + Tigger4(Zombi) DNA MER2_type 332 788 -1943 2244 100 3 3 chr6 38501948 38502249 -143912993 + AluSx SINE Alu 1 301 -11 744 214 48 18 chr6 38502295 38502463 -143912779 - MER20 DNA MER1_type -10 209 37 338 176 16 5 chr6 38503242 38503364 -143911878 + MER53 DNA DNA 1 189 0 2422 70 0 20 chr6 38503451 38503752 -143911490 - AluY SINE Alu -16 295 1 204 308 105 14 chr6 38503974 38504117 -143911125 + MIR SINE MIR 89 244 -18 201 338 12 12 chr6 38504581 38504661 -143910581 + L2 LINE L2 3229 3308 -5 858 320 116 46 chr6 38504879 38505688 -143909554 + L2 LINE L2 1813 2564 -749 2248 109 0 0 chr6 38505688 38505981 -143909261 + AluY SINE Alu 1 293 -18 858 320 116 46 chr6 38505981 38506047 -143909195 + L2 LINE L2 2564 2624 -689 2219 111 16 7 chr6 38506047 38506353 -143908889 + AluSq SINE Alu 1 309 -4 858 320 116 46 chr6 38506353 38506879 -143908363 + L2 LINE L2 2624 3312 -1 1584 210 7 0 chr6 38507101 38507392 -143907850 + AluJb SINE Alu 3 295 -17 304 208 13 0 chr6 38507672 38507749 -143907493 + MER116 DNA Mariner 2 79 -1 319 294 175 19 chr6 38509152 38509312 -143905930 + MIR3 SINE MIR 20 204 -4 7751 79 8 21 chr6 38509699 38510771 -143904471 + MER11C LTR ERVK 1 1057 -14 23 0 0 0 chr6 38510811 38510834 -143904408 + AT_rich Low_complexity Low_complexity 1 23 0 2053 133 0 20 chr6 38510959 38511259 -143903983 + AluSx SINE Alu 1 294 -18 375 130 0 24 chr6 38511610 38511682 -143903560 - Alu SINE Alu -249 51 1 22 0 0 0 chr6 38511806 38511828 -143903414 + AT_rich Low_complexity Low_complexity 1 22 0 216 244 0 0 chr6 38512081 38512126 -143903116 - L3 LINE CR1 -418 1159 1115 790 198 85 124 chr6 38512751 38513009 -143902233 - MLT1A1 LTR MaLR 0 365 118 28 0 0 0 chr6 38514271 38514299 -143900943 + AT_rich Low_complexity Low_complexity 1 28 0 2163 96 55 0 chr6 38515035 38515328 -143899914 - AluSc SINE Alu 0 309 1 539 191 29 0 chr6 38515722 38515827 -143899415 - MLT1A1 LTR MaLR -266 108 1 1138 151 0 41 chr6 38515827 38516045 -143899197 - L1 LINE L1 -786 5360 5152 1542 178 0 0 chr6 38516048 38516312 -143898930 + L1MB1 LINE L1 5867 6130 -59 391 205 0 0 chr6 38516298 38516381 -143898861 - L1 LINE L1 -3386 2760 2678 * 945 167 0 10 chr6 38516379 38516577 -143898665 + L1MA7 LINE L1 4225 4420 -1726 * 4025 160 19 44 chr6 38516561 38516691 -143898551 + L1MA7 LINE L1 4643 4775 -1516 2066 122 0 0 chr6 38516691 38516969 -143898273 + AluSg1 SINE Alu 1 278 -31 186 43 0 0 chr6 38516972 38516995 -143898247 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4025 160 19 44 chr6 38516995 38517634 -143897608 + L1MA7 LINE L1 4777 5430 -861 2207 120 0 3 chr6 38517634 38517933 -143897309 + AluSc SINE Alu 5 302 -7 4025 160 19 44 chr6 38517933 38518067 -143897175 + L1MA7 LINE L1 5430 5566 -725 1963 134 0 45 chr6 38518067 38518381 -143896861 + AluSx SINE Alu 1 300 -12 4025 160 19 44 chr6 38518381 38518688 -143896554 + L1MA7 LINE L1 5566 5879 -412 2509 71 0 0 chr6 38518688 38518996 -143896246 + AluY SINE Alu 1 308 -3 4025 160 19 44 chr6 38518996 38519367 -143895875 + L1MA7 LINE L1 5879 6291 0 204 254 30 0 chr6 38519655 38519722 -143895520 + (CATA)n Simple_repeat Simple_repeat 4 72 0 196 313 15 0 chr6 38520705 38520772 -143894470 - L2 LINE L2 -4 3309 3242 2168 134 0 0 chr6 38522267 38522572 -143892670 + AluSg SINE Alu 1 305 -5 434 241 47 61 chr6 38522618 38522830 -143892412 - L1ME3A LINE L1 0 6170 5962 238 178 0 0 chr6 38522897 38522942 -143892300 - L1ME3A LINE L1 -238 5932 5888 546 272 8 53 chr6 38522963 38523206 -143892036 + L1M4 LINE L1 4877 5108 -1038 206 280 13 53 chr6 38523811 38523886 -143891356 - L2 LINE L2 -8 3305 3234 246 273 152 0 chr6 38523936 38524035 -143891207 + L2 LINE L2 3199 3312 -1 1965 163 0 3 chr6 38524091 38524480 -143890762 + AluSx SINE Alu 1 388 0 194 264 110 0 chr6 38525677 38525768 -143889474 - MIR SINE MIR -33 229 129 2097 129 7 0 chr6 38526058 38526360 -143888882 + AluSx SINE Alu 1 304 -8 363 295 161 13 chr6 38527832 38527981 -143887261 + MIR3 SINE MIR 2 172 -36 5239 141 66 22 chr6 38528082 38528500 -143886742 + MER4D LTR ERV1 1 399 -504 2213 86 7 13 chr6 38528500 38528801 -143886441 - AluSx SINE Alu -13 299 1 5239 141 66 22 chr6 38528801 38529247 -143885995 + MER4D LTR ERV1 399 903 0 1244 156 74 12 chr6 38529247 38529479 -143885763 - Tigger2 DNA MER2_type -8 2710 2461 3903 180 53 1 chr6 38529538 38530253 -143884989 - Tigger2 DNA MER2_type -1965 753 2 21 36 0 0 chr6 38530298 38530326 -143884916 + AT_rich Low_complexity Low_complexity 1 28 0 2796 270 69 73 chr6 38531387 38532835 -143882407 + L1M4b LINE L1 75 1517 -5342 2699 159 57 74 chr6 38532835 38533364 -143881878 - MLT2B1 LTR ERVL 0 520 1 2796 270 69 73 chr6 38533364 38533444 -143881798 + L1M4b LINE L1 1517 1596 -5263 5550 85 15 6 chr6 38533444 38534159 -143881083 + LTR30 LTR ERV1 1 722 0 1822 186 8 62 chr6 38534180 38534364 -143880878 - MLT1A1 LTR MaLR 0 365 211 2997 38 0 0 chr6 38534364 38534705 -143880537 - L1PA4 LINE L1 0 6155 5815 1822 186 8 62 chr6 38534705 38534906 -143880336 - MLT1A1 LTR MaLR -154 211 1 563 155 10 0 chr6 38534910 38535013 -143880229 + L1M4b LINE L1 1611 1714 -5141 2332 84 0 0 chr6 38535518 38535825 -143879417 + AluY SINE Alu 1 307 0 264 373 8 25 chr6 38536080 38536218 -143879024 + MIR SINE MIR 8 142 -66 1770 156 21 0 chr6 38536436 38536718 -143878524 + AluSx SINE Alu 1 288 -24 286 270 69 109 chr6 38536728 38537261 -143877981 + L1ME LINE L1 4482 4993 -1153 * 1447 171 27 27 chr6 38537232 38537525 -143877717 + L1M2 LINE L1 5373 5665 -635 24 53 0 0 chr6 38537525 38537563 -143877679 + AT_rich Low_complexity Low_complexity 1 38 0 35 78 0 0 chr6 38537605 38537682 -143877560 + AT_rich Low_complexity Low_complexity 1 77 0 27 0 0 0 chr6 38537786 38537813 -143877429 + AT_rich Low_complexity Low_complexity 1 27 0 265 330 48 19 chr6 38537852 38538061 -143877181 + L1ME LINE L1 5354 5568 -602 245 333 10 0 chr6 38538098 38538194 -143877048 + L1ME LINE L1 5630 5726 -395 2018 159 62 118 chr6 38538502 38538987 -143876255 - MER66B LTR ERV1 0 486 29 1247 112 51 10 chr6 38540705 38540902 -143874340 - L1MB5 LINE L1 -9 6165 5961 291 246 16 0 chr6 38542729 38542790 -143872452 - MER2 DNA MER2_type 0 345 284 2523 50 0 20 chr6 38542814 38543117 -143872125 - AluY SINE Alu -14 297 1 378 203 25 0 chr6 38543125 38543204 -143872038 - MER2 DNA MER2_type -255 90 10 795 285 8 61 chr6 38543502 38543748 -143871494 + MIR SINE MIR 30 262 0 2420 100 3 0 chr6 38544410 38544721 -143870521 - AluSq SINE Alu -1 312 1 1906 242 82 12 chr6 38545224 38546032 -143869210 - L1MEc LINE L1 -3461 2754 1846 1211 176 23 23 chr6 38546032 38546248 -143868994 + MER20 DNA MER1_type 1 216 -3 6756 89 71 6 chr6 38546261 38546601 -143868641 - L1PA13 LINE L1 -4 6159 5842 2143 72 72 0 chr6 38546601 38546880 -143868362 - AluY SINE Alu -12 299 1 6756 89 71 6 chr6 38546880 38548094 -143867148 - L1PA13 LINE L1 -321 5842 4561 651 167 111 0 chr6 38548171 38548279 -143866963 + FLAM_A SINE Alu 1 120 -13 2280 80 0 14 chr6 38548614 38548926 -143866316 - AluY SINE Alu 0 308 1 630 268 50 10 chr6 38549434 38549673 -143865569 + MLT1H LTR MaLR 8 299 -250 426 253 17 112 chr6 38549711 38549889 -143865353 + MLT1H LTR MaLR 389 549 0 255 315 56 65 chr6 38550090 38550322 -143864920 - MIR SINE MIR -26 236 7 590 72 16 2 chr6 38550869 38551119 -143864123 + AluY SINE Alu 1 301 -11 346 292 10 0 chr6 38551633 38551729 -143863513 + MIR SINE MIR 58 154 -108 562 234 23 0 chr6 38551818 38551946 -143863296 - MER90 LTR ERV1 -2 612 482 1204 227 42 57 chr6 38551946 38552329 -143862913 - MLT2C1 LTR ERVL -18 379 3 2051 219 25 25 chr6 38552334 38552804 -143862438 - MER90 LTR ERV1 -141 473 4 2204 129 0 0 chr6 38553685 38553995 -143861247 + AluSg SINE Alu 1 310 0 22 0 0 0 chr6 38554722 38554744 -143860498 + AT_rich Low_complexity Low_complexity 1 22 0 1919 162 0 13 chr6 38555262 38555576 -143859666 + AluJo SINE Alu 1 310 -2 473 143 0 22 chr6 38555576 38555667 -143859575 + (GGAA)n Simple_repeat Simple_repeat 1 89 0 1462 261 17 52 chr6 38556151 38556700 -143858542 + L1M4 LINE L1 2613 3141 -3005 3412 65 2 62 chr6 38556700 38557180 -143858062 + L1PA8 LINE L1 5721 6171 -1 1462 261 17 52 chr6 38557180 38557232 -143858010 + L1M4 LINE L1 3141 3193 -2953 1155 281 18 0 chr6 38557304 38557578 -143857664 - Zaphod DNA AcHobo -3670 361 83 848 302 13 15 chr6 38557744 38558274 -143856968 + SVA Other Other 858 1386 0 518 165 22 0 chr6 38558288 38558379 -143856863 + L1MD3 LINE L1 7890 7982 -13 215 324 10 0 chr6 38558482 38558584 -143856658 + (CAGAGA)n Simple_repeat Simple_repeat 6 108 0 604 236 25 127 chr6 38560636 38560950 -143854292 - LTR41 LTR ERVL -211 562 281 378 255 78 0 chr6 38560950 38561103 -143854139 + L1MCa LINE L1 1322 1486 -4940 316 214 132 13 chr6 38561225 38561384 -143853858 + L1M4 LINE L1 5222 5399 -747 501 245 78 44 chr6 38561754 38561958 -143853284 - L2 LINE L2 0 3313 3103 3611 106 43 9 chr6 38562973 38563512 -143851730 - L1MA1 LINE L1 -3 6299 5743 3933 138 7 3 chr6 38563513 38564512 -143850730 - L1MA1 LINE L1 -628 5674 4673 239 286 31 0 chr6 38564807 38564905 -143850337 - L1MC3 LINE L1 0 7785 7685 6167 61 26 79 chr6 38564925 38567109 -143848133 - SVA Other Other -518 1386 1 2644 106 20 57 chr6 38567274 38567728 -143847514 + MLT2A2 LTR ERVL 17 453 0 434 171 0 140 chr6 38567770 38567934 -143847308 + LTR41 LTR ERVL 632 772 -1 555 324 100 7 chr6 38567935 38568216 -143847026 + HAL1 LINE L1 1593 1899 -608 2422 25 7 14 chr6 38568622 38568937 -143846305 + AluY SINE Alu 1 313 0 191 302 0 0 chr6 38569307 38569350 -143845892 - L2 LINE L2 -708 2606 2564 312 278 0 21 chr6 38570056 38570153 -143845089 - HAL1 LINE L1 -968 1539 1445 596 221 107 45 chr6 38570635 38570879 -143844363 - L1M4b LINE L1 -5395 1464 1206 313 326 51 11 chr6 38570942 38571120 -143844122 - L1M4b LINE L1 -5667 1188 1004 281 218 26 122 chr6 38571174 38571330 -143843912 - L1M4b LINE L1 -5688 1171 1031 210 143 0 0 chr6 38571353 38571388 -143843854 + (TG)n Simple_repeat Simple_repeat 1 35 0 547 272 24 21 chr6 38571463 38571677 -143843565 - L1M4b LINE L1 -6341 514 91 1049 197 168 17 chr6 38571764 38572129 -143843113 - L1MEc LINE L1 -3683 2532 2154 299 139 0 0 chr6 38572214 38572277 -143842965 - Alu SINE Alu 0 300 238 446 267 121 41 chr6 38572682 38572920 -143842322 + L1MC4a LINE L1 6596 6795 -1013 2412 42 3 23 chr6 38572948 38573256 -143841986 + AluY SINE Alu 1 302 -9 386 302 55 30 chr6 38573321 38573523 -143841719 + L1M4 LINE L1 2258 2464 -3682 7593 92 5 25 chr6 38574135 38575214 -143840028 + MER11C LTR ERVK 1 1057 -14 23 0 0 0 chr6 38575254 38575277 -143839965 + AT_rich Low_complexity Low_complexity 1 23 0 2033 140 0 19 chr6 38575402 38575709 -143839533 + AluSx SINE Alu 1 301 -11 360 154 0 24 chr6 38576060 38576132 -143839110 - Alu SINE Alu -251 51 1 192 289 0 0 chr6 38576532 38576577 -143838665 - L3 LINE CR1 -418 1159 1115 21 57 0 0 chr6 38577119 38577154 -143838088 + AT_rich Low_complexity Low_complexity 1 35 0 734 202 85 124 chr6 38577213 38577471 -143837771 - MLT1A1 LTR MaLR 0 365 118 28 0 0 0 chr6 38578734 38578762 -143836480 + AT_rich Low_complexity Low_complexity 1 28 0 2172 96 55 0 chr6 38579497 38579790 -143835452 - AluSc SINE Alu 0 309 1 493 188 20 0 chr6 38580184 38580285 -143834957 - MLT1A1 LTR MaLR -262 103 1 1079 142 0 41 chr6 38580285 38580503 -143834739 - L1 LINE L1 -786 5360 5152 1437 174 0 0 chr6 38580506 38580770 -143834472 + L1MB1 LINE L1 5867 6130 -59 353 205 0 0 chr6 38580756 38580839 -143834403 - L1 LINE L1 -3386 2760 2678 * 855 167 0 10 chr6 38580837 38581035 -143834207 + L1 LINE L1 4225 4420 -1726 * 3639 159 14 25 chr6 38581019 38581149 -143834093 + L1 LINE L1 4643 4773 -1373 2083 121 0 0 chr6 38581149 38581453 -143833789 + AluSg1 SINE Alu 1 304 0 3639 159 14 25 chr6 38581453 38582087 -143833155 + L1 LINE L1 4773 5400 -746 1615 128 0 0 chr6 38582092 38582311 -143832931 + AluSc SINE Alu 5 223 -86 393 329 62 36 chr6 38582683 38582990 -143832252 - L1M4 LINE L1 -1760 4386 4072 422 358 73 22 chr6 38584546 38584859 -143830383 + L2 LINE L2 2846 3174 -139 345 47 0 0 chr6 38585299 38585342 -143829900 + (CA)n Simple_repeat Simple_repeat 2 44 0 2446 115 22 6 chr6 38585812 38586168 -143829074 + THE1B LTR MaLR 3 364 0 1343 127 32 0 chr6 38586223 38586444 -143828798 + MSTB1 LTR MaLR 152 379 -53 1202 139 87 16 chr6 38587256 38587508 -143827734 + LTR1 LTR ERV1 1 270 -515 1097 125 40 0 chr6 38587484 38587660 -143827582 + LTR1 LTR ERV1 603 785 0 * 27 49 0 0 chr6 38587792 38587833 -143827409 + AT_rich Low_complexity Low_complexity 1 41 0 2216 113 0 0 chr6 38587833 38588117 -143827125 + AluSx SINE Alu 1 284 -28 243 146 0 0 chr6 38588117 38588158 -143827084 + (TA)n Simple_repeat Simple_repeat 2 42 0 375 260 13 87 chr6 38588167 38588317 -143826925 - L2 LINE L2 -32 3281 3143 9946 84 9 0 chr6 38589150 38590514 -143824728 + HERVFH19I LTR ERV1 6344 7719 0 3418 75 34 0 chr6 38590514 38590984 -143824258 + LTR19A LTR ERV1 1 486 0 241 237 62 31 chr6 38591235 38591332 -143823910 + MIR SINE MIR 153 252 -10 342 97 56 14 chr6 38591482 38591554 -143823688 + CT-rich Low_complexity Low_complexity 3 77 0 3420 167 41 11 chr6 38591555 38591980 -143823262 - L1MB3 LINE L1 0 6183 5727 243 0 0 0 chr6 38591980 38592007 -143823235 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3420 167 41 11 chr6 38592007 38592292 -143822950 - L1MB3 LINE L1 -456 5727 5452 407 294 78 52 chr6 38592296 38592527 -143822715 + L1ME3A LINE L1 5829 6065 -105 4280 131 39 93 chr6 38593474 38594484 -143820758 - Tigger3b DNA MER2_type -276 955 1 234 310 76 32 chr6 38594529 38594687 -143820555 - L1ME LINE L1 -5507 1036 872 281 298 44 32 chr6 38594711 38594973 -143820269 - L1ME LINE L1 -5590 940 665 441 360 44 44 chr6 38595226 38595501 -143819741 - L1ME LINE L1 -6232 308 34 402 303 45 31 chr6 38595527 38596104 -143819138 - L1MEc LINE L1 -4760 1636 1052 2059 118 16 10 chr6 38596862 38597167 -143818075 + AluSc SINE Alu 1 307 -2 260 0 57 0 chr6 38597170 38597205 -143818037 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 3614 86 34 11 chr6 38597206 38597763 -143817479 - LTR19B LTR ERV1 -10 570 1 372 189 67 0 chr6 38598067 38598157 -143817085 - ORSL DNA AcHobo -179 96 1 187 309 182 9 chr6 38598249 38598359 -143816883 - L2 LINE L2 -6 3266 3138 248 316 53 45 chr6 38599727 38599860 -143815382 - L2 LINE L2 -50 3222 3089 487 83 0 0 chr6 38601092 38601164 -143814078 - MER51A LTR ERV1 -74 560 489 290 300 123 15 chr6 38603145 38603275 -143811967 + MIR SINE MIR 92 235 -27 27 0 0 0 chr6 38603301 38603328 -143811914 + AT_rich Low_complexity Low_complexity 1 27 0 1886 137 16 6 chr6 38603733 38603978 -143811264 + L1MC1 LINE L1 6013 6263 -70 1808 149 41 56 chr6 38603978 38604320 -143810922 - MER1B DNA MER1_type 0 337 1 1886 137 16 6 chr6 38604320 38604387 -143810855 + L1MC1 LINE L1 6263 6328 -5 * 7511 30 0 0 chr6 38604384 38605938 -143809304 - L1PA4 LINE L1 -5 6150 4596 2556 13 0 0 chr6 38605940 38606253 -143808989 + L1PA4 LINE L1 4275 4587 -1559 219 146 0 0 chr6 38606443 38606484 -143808758 + (TG)n Simple_repeat Simple_repeat 2 42 0 1240 176 52 29 chr6 38606879 38607151 -143808091 + AluJo SINE Alu 5 282 -30 216 0 0 0 chr6 38607154 38607178 -143808064 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 271 224 53 0 chr6 38607365 38607441 -143807801 + L1MC5 LINE L1 7384 7463 -498 337 39 19 19 chr6 38607457 38607509 -143807733 + (GAGAA)n Simple_repeat Simple_repeat 5 56 0 417 226 78 39 chr6 38607585 38607789 -143807453 + L1MC5 LINE L1 7641 7852 -109 214 290 48 16 chr6 38608198 38608260 -143806982 - L2 LINE L2 -75 3197 3134 307 259 41 95 chr6 38608936 38609083 -143806159 + HAL1b LINE L1 748 886 -462 838 271 30 27 chr6 38609192 38609491 -143805751 - LTR16A LTR ERVL -129 321 22 2039 115 0 0 chr6 38609602 38609871 -143805371 - AluSg SINE Alu -37 273 5 3277 141 64 31 chr6 38609911 38610347 -143804895 + L1MA7 LINE L1 5594 6014 -277 1699 167 32 0 chr6 38610347 38610629 -143804613 + AluJb SINE Alu 1 291 -21 3277 141 64 31 chr6 38610629 38610710 -143804532 + L1MA7 LINE L1 6014 6091 -200 1314 210 52 6 chr6 38610710 38611039 -143804203 + MER2 DNA MER2_type 1 344 0 3277 141 64 31 chr6 38611039 38611194 -143804048 + L1MA7 LINE L1 6091 6289 -2 234 139 0 0 chr6 38613015 38613051 -143802191 + MLT1K LTR MaLR 142 177 -411 252 77 0 0 chr6 38613109 38613148 -143802094 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr6 38613247 38613270 -143801972 + (TCTCCC)n Simple_repeat Simple_repeat 4 26 0 23006 165 12 24 chr6 38613370 38617585 -143797657 + L1PA10 LINE L1 315 4579 -1904 8150 61 7 0 chr6 38617585 38618547 -143796695 - LTR5 LTR ERVK 0 969 1 23006 165 12 24 chr6 38618547 38619877 -143795365 + L1PA10 LINE L1 4579 5924 -559 2754 82 3 0 chr6 38619877 38620231 -143795011 - THE1A LTR MaLR 0 355 1 11588 93 4 22 chr6 38620231 38620563 -143794679 - THE1A-int LTR MaLR 0 1580 1244 2294 110 0 3 chr6 38620563 38620872 -143794370 - AluY SINE Alu -3 308 1 11588 93 4 22 chr6 38620872 38622148 -143793094 - THE1A-int LTR MaLR -336 1244 1 2647 93 6 0 chr6 38622148 38622501 -143792741 - THE1A LTR MaLR 0 355 1 23006 165 12 24 chr6 38622501 38623003 -143792239 + L1PA10 LINE L1 5921 6461 -22 204 40 0 0 chr6 38623003 38623028 -143792214 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 2884 147 12 10 chr6 38623046 38623158 -143792084 - L1MA7 LINE L1 -350 5941 5831 1087 174 43 135 chr6 38623158 38623670 -143791572 + MER4C LTR ERV1 1 465 0 2884 147 12 10 chr6 38623670 38624068 -143791174 - L1MA7 LINE L1 -460 5831 5430 181 200 0 0 chr6 38626330 38626365 -143788877 - MIR SINE MIR -27 235 201 1961 246 74 4 chr6 38626472 38627000 -143788242 + Zaphod DNA AcHobo 83 647 -3384 239 360 11 0 chr6 38627000 38627089 -143788153 - MIR SINE MIR -117 145 56 248 309 36 0 chr6 38630032 38630116 -143785126 + L2 LINE L2 3227 3313 0 2592 55 0 3 chr6 38630340 38630652 -143784590 - AluY SINE Alu 0 311 1 1193 178 34 34 chr6 38633787 38634056 -143781186 - L1MC2 LINE L1 -16 6328 6060 2114 193 33 38 chr6 38634056 38634120 -143781122 + LOR1b LTR ERV1 2 65 -396 2225 87 0 7 chr6 38634120 38634432 -143780810 - AluY SINE Alu 0 311 1 2114 193 33 38 chr6 38634432 38634819 -143780423 + LOR1b LTR ERV1 65 451 -10 266 143 0 0 chr6 38634819 38634854 -143780388 + LOR1a LTR ERV1 461 495 -2 2798 170 19 0 chr6 38634858 38635345 -143779897 - L1MC2 LINE L1 -282 6062 5567 1750 109 79 19 chr6 38635345 38635610 -143779632 + MER51A LTR ERV1 1 281 -353 21 0 0 0 chr6 38635798 38635819 -143779423 + AT_rich Low_complexity Low_complexity 1 21 0 4435 173 33 14 chr6 38635906 38636163 -143779079 - L1MC2 LINE L1 -25 6319 6068 1899 202 61 25 chr6 38636163 38636608 -143778634 + LOR1b LTR ERV1 1 461 0 4435 173 33 14 chr6 38636608 38637189 -143778053 - L1MC2 LINE L1 -276 6068 5465 3638 242 137 37 chr6 38637202 38638372 -143776870 - L1MD2 LINE L1 -2 6357 5305 209 33 33 0 chr6 38638372 38638402 -143776840 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3638 242 137 37 chr6 38638402 38638593 -143776649 - L1MD2 LINE L1 -1054 5305 5134 200 57 0 29 chr6 38638593 38638628 -143776614 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3638 242 137 37 chr6 38638628 38639385 -143775857 - L1MD2 LINE L1 -1225 5134 4454 216 0 0 0 chr6 38639385 38639409 -143775833 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3638 242 137 37 chr6 38639409 38640129 -143775113 - L1MD2 LINE L1 -1905 4454 3196 304 257 83 7 chr6 38640193 38640337 -143774905 - L1M4 LINE L1 -2796 3350 3196 1741 95 13 0 chr6 38640348 38640580 -143774662 - AluSp SINE Alu -5 308 74 8971 87 10 23 chr6 38640580 38641499 -143773743 + HERV9 LTR ERV1 5560 6459 -1940 11438 46 13 9 chr6 38641499 38642877 -143772365 - SVA Other Other -1 1385 2 8971 87 10 23 chr6 38642877 38643212 -143772030 + HERV9 LTR ERV1 6459 6797 -1602 2343 96 0 16 chr6 38643381 38643693 -143771549 - AluSg SINE Alu -3 307 1 331 320 67 17 chr6 38643874 38644052 -143771190 - L1MC2 LINE L1 -650 5471 5285 1070 275 42 6 chr6 38644243 38644599 -143770643 - L1MB8 LINE L1 -2 6176 5808 602 248 0 0 chr6 38644611 38644748 -143770494 - L1PB4 LINE L1 0 6156 6020 412 224 0 0 chr6 38644748 38644824 -143770418 - U1 snRNA snRNA -87 78 3 1217 245 24 3 chr6 38644829 38645127 -143770115 - L1MB8 LINE L1 -343 5823 5520 1840 166 3 0 chr6 38645187 38645482 -143769760 + AluSg SINE Alu 1 296 -14 233 221 26 0 chr6 38645892 38645969 -143769273 + L1MC4 LINE L1 6610 6688 -1354 476 308 93 24 chr6 38645978 38646267 -143768975 + MLT1L LTR MaLR 231 539 -76 608 158 17 0 chr6 38646994 38647114 -143768128 - L1MA8 LINE L1 -4 6287 6166 360 133 0 0 chr6 38647839 38647899 -143767343 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 2487 70 3 0 chr6 38647900 38648198 -143767044 - AluSg SINE Alu -11 299 1 270 246 14 0 chr6 38649088 38649157 -143766085 - MIR SINE MIR -139 123 54 492 278 63 21 chr6 38650100 38650291 -143764951 + MIR SINE MIR 8 206 -56 333 100 0 0 chr6 38651948 38651998 -143763244 + (TC)n Simple_repeat Simple_repeat 2 51 0 351 0 0 0 chr6 38651998 38652037 -143763205 + (CA)n Simple_repeat Simple_repeat 1 39 0 251 375 31 6 chr6 38653188 38653348 -143761894 - L2 LINE L2 -436 2878 2715 235 245 0 0 chr6 38653517 38653566 -143761676 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 308 298 102 39 chr6 38653618 38653980 -143761262 + Tigger4(Zombi) DNA MER2_type 404 788 -1943 2033 117 24 3 chr6 38654013 38654311 -143760931 + AluSx SINE Alu 1 304 -8 871 174 56 28 chr6 38654354 38654532 -143760710 - MER20 DNA MER1_type -7 212 30 358 183 15 5 chr6 38655306 38655428 -143759814 + MER53 DNA DNA 1 189 0 455 307 161 41 chr6 38656589 38657418 -143757824 + L2 LINE L2 1776 2721 -593 2239 110 0 0 chr6 38657418 38657709 -143757533 + AluY SINE Alu 1 291 -20 455 307 161 41 chr6 38657709 38657775 -143757467 + L2 LINE L2 2721 2778 -536 2158 126 0 10 chr6 38657775 38658077 -143757165 + AluSq SINE Alu 1 299 -14 8974 27 1 0 chr6 38658077 38659124 -143756118 - L1PA3 LINE L1 -1244 4902 3855 7817 21 0 13 chr6 38659124 38660382 -143754860 + L1PA3 LINE L1 4910 6155 0 243 0 0 0 chr6 38660402 38660429 -143754813 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 485 337 70 47 chr6 38660429 38660964 -143754278 + L2 LINE L2 2768 3312 -1 1629 192 10 3 chr6 38661189 38661480 -143753762 + AluJb SINE Alu 3 295 -17 293 208 13 0 chr6 38661760 38661837 -143753405 + MER116 DNA Mariner 2 79 -1 248 309 36 0 chr6 38667299 38667383 -143747859 - L2 LINE L2 0 3313 3227 216 230 55 42 chr6 38668276 38668441 -143746801 + (CCCGG)n Simple_repeat Simple_repeat 4 170 0 2015 245 82 4 chr6 38670426 38670949 -143744293 - Zaphod DNA AcHobo -3370 661 98 7937 65 12 5 chr6 38671092 38672092 -143743150 + LTR13 LTR ERVK 1 1007 0 206 231 0 0 chr6 38672135 38672174 -143743068 + CT-rich Low_complexity Low_complexity 2 40 0 3101 147 12 10 chr6 38674368 38674766 -143740476 + L1MA7 LINE L1 5430 5831 -460 1195 171 43 137 chr6 38674766 38675279 -143739963 - MER4C LTR ERV1 0 465 1 3101 147 12 10 chr6 38675279 38675391 -143739851 + L1MA7 LINE L1 5831 5941 -350 23175 163 13 24 chr6 38675395 38675941 -143739301 - L1PA10 LINE L1 0 6483 5932 2659 99 6 0 chr6 38675941 38676294 -143738948 + THE1A LTR MaLR 1 355 0 11796 91 4 22 chr6 38676294 38677570 -143737672 + THE1A-int LTR MaLR 1 1244 -336 2319 107 0 3 chr6 38677570 38677879 -143737363 + AluY SINE Alu 1 308 -3 11796 91 4 22 chr6 38677879 38678211 -143737031 + THE1A-int LTR MaLR 1244 1580 0 2818 79 3 0 chr6 38678211 38678565 -143736677 + THE1A LTR MaLR 1 355 0 23175 163 13 24 chr6 38678565 38679895 -143735347 - L1PA10 LINE L1 -549 5934 4591 8115 62 7 0 chr6 38679895 38680857 -143734385 + LTR5 LTR ERVK 1 969 0 23175 163 13 24 chr6 38680857 38685198 -143730044 - L1PA10 LINE L1 -1892 4591 198 8384 53 1 0 chr6 38685198 38686163 -143729079 + LTR5 LTR ERVK 1 966 -3 23175 163 13 24 chr6 38686163 38686356 -143728886 - L1PA10 LINE L1 -6285 198 4 242 264 0 98 chr6 38686356 38686403 -143728839 - L1 LINE L1 -841 5305 5255 593 212 0 61 chr6 38686403 38686535 -143728707 - FLAM_A SINE Alu -7 126 3 242 264 0 98 chr6 38686535 38686650 -143728592 - L1 LINE L1 -891 5255 5159 269 196 0 0 chr6 38686852 38686898 -143728344 + L2 LINE L2 2608 2653 -661 * 416 287 52 29 chr6 38686876 38687050 -143728192 + MIR SINE MIR 56 235 -27 34 0 0 0 chr6 38687051 38687085 -143728157 + AT_rich Low_complexity Low_complexity 1 34 0 1741 136 0 4 chr6 38687085 38687357 -143727885 - L1PB3 LINE L1 -2 6152 5882 1440 208 11 3 chr6 38687357 38687704 -143727538 - L1 LINE L1 -980 5166 4817 612 204 19 31 chr6 38687662 38687824 -143727418 + L1MD2 LINE L1 6183 6342 -17 * 229 240 42 52 chr6 38687892 38687988 -143727254 + L1MEc LINE L1 1136 1230 -5166 1711 176 0 0 chr6 38688035 38688297 -143726945 - AluJb SINE Alu -26 286 25 562 282 35 4 chr6 38688319 38688578 -143726664 - L1MCa LINE L1 -5228 1198 932 1426 210 9 59 chr6 38688580 38688904 -143726338 - MER70B LTR ERVL 0 578 271 267 336 15 7 chr6 38689081 38689218 -143726024 + HERVL LTR ERVL 3354 3491 -2163 1898 189 26 0 chr6 38689327 38689677 -143725565 + MER54A LTR ERVL 4 362 -539 937 182 118 94 chr6 38689686 38690016 -143725226 + MLT1A1 LTR MaLR 28 365 0 791 266 35 21 chr6 38690162 38690452 -143724790 - HERVL LTR ERVL -1212 4442 4149 345 211 13 0 chr6 38690462 38690538 -143724704 - MER54A LTR ERVL -823 78 2 326 294 28 7 chr6 38690909 38691070 -143724172 + MLT1J2 LTR MaLR 285 446 0 261 0 0 0 chr6 38691749 38691778 -143723464 + (A)n Simple_repeat Simple_repeat 1 29 0 1797 164 18 12 chr6 38692333 38692669 -143722573 - MER44D DNA MER2_type -1 608 1 22 0 0 0 chr6 38693410 38693432 -143721810 + AT_rich Low_complexity Low_complexity 1 22 0 809 204 88 25 chr6 38693641 38693881 -143721361 - MLT1E3 LTR MaLR 0 624 370 435 324 39 10 chr6 38693881 38694088 -143721154 + L1MEc LINE L1 2503 2715 -3500 212 0 36 0 chr6 38694170 38694198 -143721044 + (CATTA)n Simple_repeat Simple_repeat 2 30 0 31 20 0 20 chr6 38694204 38694223 -143721019 + AT_rich Low_complexity Low_complexity 1 19 -29 2085 121 7 7 chr6 38694223 38694513 -143720729 + AluSx SINE Alu 1 290 -22 31 20 0 20 chr6 38694513 38694542 -143720700 + AT_rich Low_complexity Low_complexity 19 48 0 484 299 52 28 chr6 38694615 38694823 -143720419 - L1M4 LINE L1 -3500 2646 2444 1863 176 7 0 chr6 38694823 38695129 -143720113 - AluJb SINE Alu -4 308 1 484 299 52 28 chr6 38695129 38695425 -143719817 - L1M4 LINE L1 -3702 2444 2130 2787 10 0 0 chr6 38696104 38696408 -143718834 - AluYa5 SINE Alu -6 305 2 293 219 168 17 chr6 38696991 38697110 -143718132 + L1MC4 LINE L1 7780 7916 -126 25 31 0 0 chr6 38697191 38697223 -143718019 + AT_rich Low_complexity Low_complexity 1 32 0 1741 28 0 9 chr6 38697223 38697435 -143717807 - L1PA5 LINE L1 -9 6145 5936 2235 92 10 0 chr6 38697704 38697996 -143717246 - AluSq SINE Alu -18 295 1 326 291 54 14 chr6 38698003 38698151 -143717091 + L1ME4a LINE L1 5767 5920 -201 521 141 0 0 chr6 38698503 38698581 -143716661 - FLAM_C SINE Alu -33 110 33 7978 158 18 62 chr6 38698581 38700522 -143714720 + L1MEc LINE L1 2849 4703 -1512 2282 116 0 3 chr6 38800551 38800862 -143614380 - AluSg SINE Alu 0 310 1 2305 79 20 10 chr6 38801485 38801777 -143613465 + AluSx SINE Alu 3 297 -15 594 126 202 0 chr6 38802317 38802436 -143612806 + MER7A DNA MER2_type 2 142 -204 1557 170 13 33 chr6 38802448 38802754 -143612488 - AluJb SINE Alu -7 305 6 1957 139 30 26 chr6 38802960 38803263 -143611979 + AluSx SINE Alu 1 304 -8 682 174 19 68 chr6 38803433 38803594 -143611648 - FAM SINE Alu -9 40 1 956 171 15 68 chr6 38803648 38803693 -143611549 - Tigger3(Golem) DNA MER2_type 0 3029 2983 2295 116 0 0 chr6 38803693 38804004 -143611238 - AluSx SINE Alu -1 311 1 956 171 15 68 chr6 38804004 38804163 -143611079 - Tigger3(Golem) DNA MER2_type -46 2983 2836 2146 106 6 58 chr6 38804169 38804498 -143610744 + AluSx SINE Alu 1 312 0 2193 112 0 40 chr6 38804500 38804822 -143610420 + AluSg SINE Alu 1 309 -1 1508 179 11 11 chr6 38805116 38805389 -143609853 - AluJo SINE Alu -13 299 27 1679 127 104 4 chr6 38805389 38805657 -143609585 + AluJb SINE Alu 1 295 -17 226 189 0 0 chr6 38805657 38805694 -143609548 - AluJo SINE Alu -266 37 1 252 0 0 0 chr6 38805850 38805878 -143609364 + (A)n Simple_repeat Simple_repeat 1 28 0 2313 96 0 0 chr6 38806210 38806503 -143608739 - AluSx SINE Alu -19 293 1 1850 167 3 7 chr6 38806538 38806838 -143608404 + AluJb SINE Alu 11 309 -3 1852 159 0 3 chr6 38806840 38807123 -143608119 - AluJb SINE Alu -30 282 1 2328 92 3 0 chr6 38807532 38807824 -143607418 + AluSc SINE Alu 3 295 -14 2266 108 0 0 chr6 38807899 38808194 -143607048 + AluSg SINE Alu 1 295 -15 1686 172 17 33 chr6 38808418 38808720 -143606522 - AluJo SINE Alu -15 297 1 2329 110 0 3 chr6 38808796 38809097 -143606145 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr6 38809115 38809138 -143606104 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 931 150 0 27 chr6 38809142 38809289 -143605953 - AluSq SINE Alu -63 250 108 1488 182 18 36 chr6 38809389 38809669 -143605573 - AluJo SINE Alu -37 275 1 2087 83 4 0 chr6 38809853 38810107 -143605135 - AluSp SINE Alu -38 275 21 2303 105 7 3 chr6 38810265 38810571 -143604671 + AluSq SINE Alu 1 307 -6 1662 156 49 4 chr6 38810571 38810709 -143604533 - AluSx SINE Alu -37 275 145 423 0 0 0 chr6 38810709 38810756 -143604486 + (TG)n Simple_repeat Simple_repeat 2 48 0 344 58 0 19 chr6 38810755 38810807 -143604435 + (TA)n Simple_repeat Simple_repeat 2 52 0 * 1662 156 49 4 chr6 38810756 38810930 -143604312 - AluSx SINE Alu -167 145 1 203 51 26 51 chr6 38810932 38810971 -143604271 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 269 214 167 48 chr6 38811115 38811241 -143604001 + MLT1H LTR MaLR 263 403 -146 2415 91 7 0 chr6 38811244 38811553 -143603689 + AluSp SINE Alu 1 311 -2 1461 225 34 96 chr6 38811631 38812160 -143603082 - LTR8 LTR ERV1 0 691 196 333 61 20 0 chr6 38812149 38812198 -143603044 + AluJ SINE Alu 87 136 -166 * 766 190 0 25 chr6 38812198 38812356 -143602886 + AluJ SINE Alu 137 290 -12 1835 117 36 22 chr6 38812363 38812637 -143602605 + AluSp SINE Alu 1 278 -35 2151 93 11 4 chr6 38812638 38812943 -143602299 + AluY SINE Alu 2 308 0 2090 114 17 10 chr6 38813036 38813334 -143601908 - AluSx SINE Alu -8 304 5 1423 201 37 8 chr6 38813367 38813635 -143601607 + AluJo SINE Alu 13 288 -24 2075 142 7 0 chr6 38813748 38814036 -143601206 + AluSx SINE Alu 2 291 -21 2238 89 31 3 chr6 38814478 38814770 -143600472 + AluSx SINE Alu 1 300 -12 1786 154 10 36 chr6 38814913 38815218 -143600024 + AluJo SINE Alu 1 297 -15 1032 227 50 78 chr6 38815239 38815318 -143599924 + MLT1H LTR MaLR 1 81 -468 2393 60 40 3 chr6 38815318 38815616 -143599626 - AluY SINE Alu -1 310 2 1032 227 50 78 chr6 38815616 38815742 -143599500 + MLT1H LTR MaLR 81 209 -340 2457 76 0 7 chr6 38815742 38816046 -143599196 + AluSp SINE Alu 1 302 -11 1032 227 50 78 chr6 38816046 38816200 -143599042 + MLT1H LTR MaLR 209 351 -198 995 159 17 23 chr6 38816230 38816406 -143598836 - AluJ SINE Alu -4 308 134 207 308 137 17 chr6 38816407 38816524 -143598718 + MIR SINE MIR 118 248 -14 1951 154 0 19 chr6 38816535 38816710 -143598532 - AluJo SINE Alu -5 307 130 405 0 0 0 chr6 38816710 38816755 -143598487 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 2164 107 18 0 chr6 38816756 38816910 -143598332 - AluSx SINE Alu -26 286 123 243 0 0 0 chr6 38816910 38816937 -143598305 + (TG)n Simple_repeat Simple_repeat 2 28 0 2164 107 18 0 chr6 38816937 38817063 -143598179 - AluSx SINE Alu -189 123 1 1951 154 0 19 chr6 38817063 38817196 -143598046 - AluJo SINE Alu -181 131 3 640 158 108 0 chr6 38817218 38817338 -143597904 - AluJ SINE Alu -169 133 1 2404 89 26 0 chr6 38817342 38817646 -143597596 - AluSx SINE Alu 0 312 1 319 295 30 17 chr6 38817795 38818102 -143597140 + GA-rich Low_complexity Low_complexity 1 310 0 887 289 6 17 chr6 38818119 38818299 -143596943 + AluSq SINE Alu 41 218 -95 269 120 40 0 chr6 38818299 38818349 -143596893 + GA-rich Low_complexity Low_complexity 2 53 0 1232 164 5 14 chr6 38818349 38818557 -143596685 + AluSg/x SINE Alu 107 312 0 1315 99 17 0 chr6 38818567 38818739 -143596503 + AluSq SINE Alu 120 294 -19 232 91 0 0 chr6 38818864 38818897 -143596345 + L2 LINE L2 3239 3271 -1 873 147 11 74 chr6 38818999 38819131 -143596111 - LTR54 LTR ERV1 0 510 392 2269 97 0 37 chr6 38819131 38819431 -143595811 - AluSx SINE Alu -20 292 4 873 147 11 74 chr6 38819431 38819488 -143595754 - LTR54 LTR ERV1 -118 392 333 2471 82 3 19 chr6 38819510 38819825 -143595417 - AluSp SINE Alu -3 310 1 885 143 0 0 chr6 38819825 38819951 -143595291 - FLAM_C SINE Alu -9 134 9 653 164 112 154 chr6 38819955 38820241 -143595001 - LTR54 LTR ERV1 -192 318 45 461 129 0 12 chr6 38820246 38820331 -143594911 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 973 147 35 66 chr6 38820338 38820535 -143594707 - AluJo SINE Alu -38 274 84 21 0 0 0 chr6 38820542 38820563 -143594679 + AT_rich Low_complexity Low_complexity 1 21 0 2209 86 35 0 chr6 38822150 38822440 -143592802 + AluSx SINE Alu 1 300 -12 2289 105 10 3 chr6 38823360 38823666 -143591576 - AluSp SINE Alu -5 308 1 351 179 0 0 chr6 38823865 38823932 -143591310 + (CA)n Simple_repeat Simple_repeat 1 67 0 2283 80 0 51 chr6 38823986 38824298 -143590944 + AluSg SINE Alu 1 296 -14 218 250 0 0 chr6 38825479 38825527 -143589715 + MIR SINE MIR 206 253 -9 295 250 204 72 chr6 38828593 38828745 -143586497 - MIR SINE MIR -90 172 1 2435 77 3 10 chr6 38829900 38830200 -143585042 + AluSp SINE Alu 3 300 -13 2538 73 0 10 chr6 38830201 38830515 -143584727 + AluY SINE Alu 1 311 0 389 97 0 0 chr6 38830443 38830516 -143584726 + Alu SINE Alu 240 344 0 214 94 0 0 chr6 38830516 38830548 -143584694 + (A)n Simple_repeat Simple_repeat 1 180 0 360 269 101 13 chr6 38830615 38830764 -143584478 - MIR SINE MIR -72 190 29 208 204 0 20 chr6 38830848 38830897 -143584345 - MIR SINE MIR -115 93 46 484 129 35 24 chr6 38831624 38831709 -143583533 - AluSg SINE Alu -219 91 6 350 327 106 18 chr6 38832040 38832257 -143582985 - MIR SINE MIR -10 252 17 1867 80 0 0 chr6 38832927 38833164 -143582078 + AluSg SINE Alu 62 298 -12 225 266 177 8 chr6 38834300 38834424 -143580818 - MIR SINE MIR -14 248 104 2136 99 0 7 chr6 38834436 38834729 -143580513 + AluSc SINE Alu 1 291 -18 1790 149 0 36 chr6 38834886 38835194 -143580048 + AluJo SINE Alu 1 297 -15 1390 152 51 70 chr6 38835197 38835513 -143579729 + AluJo SINE Alu 1 310 -2 2037 99 3 39 chr6 38835513 38835652 -143579590 + AluSq SINE Alu 1 143 -170 2048 61 0 11 chr6 38835652 38835915 -143579327 + AluY SINE Alu 41 300 -11 2161 109 6 0 chr6 38835917 38836228 -143579014 + AluSp SINE Alu 1 313 0 2037 99 3 39 chr6 38836228 38836397 -143578845 + AluSq SINE Alu 144 301 -12 2320 91 0 0 chr6 38836400 38836707 -143578535 + AluSc SINE Alu 1 307 -2 2272 85 3 0 chr6 38836707 38837014 -143578228 + AluY SINE Alu 1 308 -3 1698 164 13 17 chr6 38837034 38837333 -143577909 + AluJb SINE Alu 1 298 -14 632 274 62 77 chr6 38837346 38837367 -143577875 + L1MC4a LINE L1 6591 6611 -1197 207 0 0 0 chr6 38837367 38837390 -143577852 + (CA)n Simple_repeat Simple_repeat 2 24 0 632 274 62 77 chr6 38837390 38837595 -143577647 + L1MC4a LINE L1 6611 6811 -997 2118 101 23 10 chr6 38837595 38837903 -143577339 + AluSx SINE Alu 1 312 0 632 274 62 77 chr6 38837903 38838077 -143577165 + L1MC4a LINE L1 6811 6986 -822 817 153 0 28 chr6 38838201 38838345 -143576897 + FRAM SINE Alu 31 170 -6 1562 50 56 0 chr6 38838356 38838554 -143576688 + AluY SINE Alu 86 294 -17 2229 100 0 25 chr6 38838935 38839255 -143575987 - AluSx SINE Alu 0 312 1 2060 100 24 0 chr6 38839539 38839829 -143575413 + AluSx SINE Alu 1 297 -15 1826 103 58 31 chr6 38840313 38840605 -143574637 - AluSx SINE Alu -12 300 1 317 239 0 14 chr6 38841497 38841568 -143573674 - MER94 DNA DNA 0 134 65 265 300 11 33 chr6 38841577 38841667 -143573575 - MER94 DNA DNA -41 93 6 2721 130 76 102 chr6 38842119 38842275 -143572967 + MER7C DNA MER2_type 1 160 -2868 2342 82 0 13 chr6 38842275 38842591 -143572651 - AluSx SINE Alu 0 312 1 2721 130 76 102 chr6 38842591 38842614 -143572628 + MER7C DNA MER2_type 160 182 -2846 1780 152 3 23 chr6 38842614 38842924 -143572318 - AluSx SINE Alu -8 304 1 1636 151 9 66 chr6 38842925 38843093 -143572149 - AluJo SINE Alu -11 301 125 2052 125 0 7 chr6 38843093 38843396 -143571846 - AluSx SINE Alu -11 301 1 204 67 0 0 chr6 38843398 38843428 -143571814 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1873 127 8 0 chr6 38843435 38843703 -143571539 - AluSx SINE Alu -36 276 7 1636 151 9 66 chr6 38843703 38843842 -143571400 - AluJo SINE Alu -194 118 1 1199 227 115 4 chr6 38843845 38844114 -143571128 - AluJo SINE Alu -3 299 1 1780 151 9 35 chr6 38844116 38844433 -143570809 - 7SLRNA srpRNA srpRNA -11 309 1 2201 106 0 3 chr6 38844440 38844742 -143570500 - AluSg SINE Alu -9 301 1 2721 130 76 102 chr6 38844742 38845160 -143570082 + MER7C DNA MER2_type 191 600 -2 317 283 175 0 chr6 38845451 38845571 -143569671 - MIR SINE MIR -1 261 121 2090 107 0 3 chr6 38845574 38845863 -143569379 + AluSc SINE Alu 1 288 -21 2296 57 3 0 chr6 38845972 38846255 -143568987 - AluY SINE Alu -22 289 6 425 243 76 86 chr6 38846255 38846536 -143568706 - L1ME4a LINE L1 -1 6120 5843 765 147 0 52 chr6 38846536 38846672 -143568570 - FLAM_A SINE Alu -4 129 1 425 243 76 86 chr6 38846672 38846798 -143568444 - L1ME4a LINE L1 -278 5843 5717 228 35 0 0 chr6 38847430 38847459 -143567783 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2074 68 0 58 chr6 38847463 38847755 -143567487 - AluSg SINE Alu -35 275 1 207 0 0 0 chr6 38847763 38847786 -143567456 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 383 164 17 103 chr6 38847826 38847942 -143567300 - L2 LINE L2 -20 3293 3188 21 0 0 0 chr6 38848094 38848115 -143567127 + AT_rich Low_complexity Low_complexity 1 21 0 406 162 0 0 chr6 38848119 38848187 -143567055 + AluJ/FLAM SINE Alu 3 70 -242 811 224 0 0 chr6 38848187 38848356 -143566886 + AluJo/FRAM SINE Alu 138 307 -1 2316 90 0 0 chr6 38848356 38848656 -143566586 - AluSq SINE Alu -13 300 1 480 181 24 0 chr6 38848769 38848852 -143566390 + AluS SINE Alu 9 93 -220 1014 211 9 9 chr6 38849028 38849255 -143565987 + AluJo SINE Alu 75 301 -11 701 178 7 22 chr6 38849298 38849433 -143565809 - FLAM_C SINE Alu 0 133 1 1644 137 11 32 chr6 38849673 38849957 -143565285 + AluJb SINE Alu 21 298 -14 363 282 66 60 chr6 38850074 38850351 -143564891 - L1M2 LINE L1 -656 5510 5265 773 121 25 126 chr6 38850361 38850417 -143564825 - L1MB7 LINE L1 -12 6172 6112 895 130 15 0 chr6 38850417 38850548 -143564694 - FLAM_C SINE Alu 0 133 1 773 121 25 126 chr6 38850548 38850689 -143564553 - L1MB7 LINE L1 -72 6112 5995 819 96 0 17 chr6 38850689 38850804 -143564438 - AluSp/q SINE Alu -19 294 182 483 138 46 0 chr6 38850812 38850899 -143564343 - L1MB7 LINE L1 -200 5984 5894 906 157 7 0 chr6 38850899 38851039 -143564203 - FRAM SINE Alu -36 140 1 2103 107 7 7 chr6 38851209 38851518 -143563724 + AluY SINE Alu 1 309 -2 691 246 14 0 chr6 38851540 38851682 -143563560 - AluJ SINE Alu -31 281 138 1854 149 6 40 chr6 38851682 38852011 -143563231 - pTR5 LTR ERV1 -2055 383 66 274 320 16 31 chr6 38852011 38852139 -143563103 - LTR30 LTR ERV1 -80 642 517 266 0 0 0 chr6 38852139 38852170 -143563072 - pTR5 LTR ERV1 -439 1999 1969 5037 163 52 39 chr6 38852192 38853196 -143562046 - pTR5 LTR ERV1 -679 1759 743 2169 106 0 10 chr6 38853213 38853515 -143561727 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 38853515 38853540 -143561702 + AT_rich Low_complexity Low_complexity 1 25 0 931 131 0 0 chr6 38853566 38853696 -143561546 - AluJ SINE Alu -171 141 12 244 263 70 64 chr6 38853708 38853737 -143561505 - L1M2 LINE L1 -1108 5038 5011 2153 76 35 0 chr6 38853737 38854026 -143561216 - AluY SINE Alu -12 299 1 244 263 70 64 chr6 38854026 38854152 -143561090 - L1M2 LINE L1 -1135 5011 4882 2021 136 3 13 chr6 38854205 38854514 -143560728 - AluSx SINE Alu -6 306 1 622 286 15 20 chr6 38854514 38854705 -143560537 + L2 LINE L2 2878 3069 -244 651 126 0 39 chr6 38854717 38854820 -143560422 + AluJb SINE Alu 5 103 -209 848 94 6 126 chr6 38854838 38854997 -143560245 - AluSq/x SINE Alu -172 140 1 687 225 9 59 chr6 38854999 38855189 -143560053 + L2 LINE L2 3102 3281 -32 601 192 80 16 chr6 38855189 38855314 -143559928 + FLAM_A SINE Alu 1 133 0 687 225 9 59 chr6 38855314 38855345 -143559897 + L2 LINE L2 3281 3312 -1 1152 124 0 0 chr6 38855830 38855999 -143559243 - AluSq SINE Alu -11 302 134 2136 113 3 0 chr6 38855999 38856310 -143558932 - AluSp SINE Alu -1 312 1 2241 103 6 3 chr6 38856456 38856767 -143558475 - AluSx SINE Alu 0 312 1 359 175 329 7 chr6 38856770 38856907 -143558335 + MER2 DNA MER2_type 165 345 0 2288 80 0 19 chr6 38857510 38857822 -143557420 - AluY SINE Alu -5 306 1 2218 97 0 0 chr6 38857830 38858129 -143557113 - AluSc SINE Alu -9 300 2 551 220 43 35 chr6 38858321 38858462 -143556780 + LTR16C LTR ERVL 92 233 -258 651 187 114 0 chr6 38858463 38858586 -143556656 + FRAM SINE Alu 1 137 -39 2396 75 3 0 chr6 38858586 38858891 -143556351 - AluSp SINE Alu -7 306 1 2053 91 4 7 chr6 38858892 38859168 -143556074 - AluSx SINE Alu -37 275 1 1713 150 14 7 chr6 38859191 38859478 -143555764 + AluJo SINE Alu 1 289 -23 639 247 134 4 chr6 38859503 38859734 -143555508 + LTR16C LTR ERVL 231 491 0 198 351 0 0 chr6 38859864 38859941 -143555301 - MIR SINE MIR -18 244 168 2684 126 20 48 chr6 38859941 38860179 -143555063 - MSTB LTR MaLR 0 426 204 2197 102 0 7 chr6 38860179 38860474 -143554768 - AluSx SINE Alu -19 293 1 2684 126 20 48 chr6 38860474 38860673 -143554569 - MSTB LTR MaLR -222 204 1 9102 159 42 28 chr6 38860676 38860998 -143554244 - MSTB-int LTR MaLR -3 1648 1332 1956 116 3 0 chr6 38860998 38861317 -143553925 - AluSx SINE Alu 0 320 1 9102 159 42 28 chr6 38861317 38862078 -143553164 - MSTB-int LTR MaLR -319 1332 531 2102 110 3 3 chr6 38862078 38862378 -143552864 + AluSq SINE Alu 1 300 -13 9102 159 42 28 chr6 38862378 38862917 -143552325 - MSTB-int LTR MaLR -1120 531 1 2246 140 27 45 chr6 38862923 38863298 -143551944 - MSTB LTR MaLR -2 424 55 2403 79 0 0 chr6 38863298 38863601 -143551641 - AluSg SINE Alu -5 305 3 2246 140 27 45 chr6 38863601 38863626 -143551616 - MSTB LTR MaLR -371 55 31 227 289 89 11 chr6 38863639 38863729 -143551513 - MIR SINE MIR -88 174 78 1427 18 0 6 chr6 38863734 38863900 -143551342 + AluYa5 SINE Alu 1 165 -146 1772 159 27 21 chr6 38864023 38864356 -143550886 + THE1C LTR MaLR 41 375 0 2091 110 7 0 chr6 38864383 38864684 -143550558 + AluSx SINE Alu 1 303 -9 223 254 32 0 chr6 38864799 38864862 -143550380 - L2 LINE L2 -229 3043 2979 532 223 123 0 chr6 38864882 38865012 -143550230 + MIR SINE MIR 117 262 0 32 0 0 0 chr6 38865140 38865172 -143550070 + AT_rich Low_complexity Low_complexity 1 32 0 449 281 44 7 chr6 38865755 38865890 -143549352 + MIR SINE MIR 8 147 -115 317 205 26 26 chr6 38865969 38866047 -143549195 + MIR SINE MIR 76 153 -109 192 271 17 0 chr6 38866693 38866752 -143548490 + L2 LINE L2 3213 3272 0 302 268 51 54 chr6 38866875 38867136 -143548106 + LTR16C LTR ERVL 158 487 -4 272 247 14 14 chr6 38867143 38867216 -143548026 + MIR SINE MIR 59 131 -131 1281 214 34 7 chr6 38867344 38867639 -143547603 + L1MC2 LINE L1 6033 6335 -9 421 327 57 54 chr6 38868458 38868755 -143546487 + L2 LINE L2 3016 3313 0 1075 249 36 22 chr6 38870125 38870502 -143544740 + LTR33 LTR ERVL 1 452 -69 2043 122 0 3 chr6 38870502 38870797 -143544445 - AluSx SINE Alu -13 299 6 1075 249 36 22 chr6 38870797 38870869 -143544373 + LTR33 LTR ERVL 452 521 0 205 374 149 0 chr6 38870875 38870982 -143544260 - MIR SINE MIR -114 148 26 378 151 0 0 chr6 38870990 38871063 -143544179 + CT-rich Low_complexity Low_complexity 4 76 0 537 157 327 19 chr6 38872813 38872866 -143542376 - MER3 DNA MER1_type 0 209 174 1674 152 0 59 chr6 38872866 38873188 -143542054 + AluJb SINE Alu 1 303 -9 537 157 327 19 chr6 38873188 38873293 -143541949 - MER3 DNA MER1_type -35 174 2 713 164 22 60 chr6 38873299 38873482 -143541760 - MER105 DNA DNA -1 203 28 375 230 0 0 chr6 38874671 38874745 -143540497 + L2 LINE L2 3233 3306 -7 246 62 0 0 chr6 38875373 38875405 -143539837 + (TGG)n Simple_repeat Simple_repeat 2 33 0 184 224 0 24 chr6 38876520 38876605 -143538637 + GA-rich Low_complexity Low_complexity 4 86 0 441 54 0 0 chr6 38877962 38878018 -143537224 + (CA)n Simple_repeat Simple_repeat 1 56 0 180 163 0 0 chr6 38878079 38878122 -143537120 + (CCCTG)n Simple_repeat Simple_repeat 3 45 0 234 62 0 0 chr6 38878397 38878429 -143536813 + (GA)n Simple_repeat Simple_repeat 1 32 0 363 232 21 35 chr6 38878597 38878739 -143536503 + GA-rich Low_complexity Low_complexity 6 145 0 274 353 17 29 chr6 38878980 38879153 -143536089 + L2 LINE L2 2303 2473 -841 2234 99 3 0 chr6 38879361 38879655 -143535587 - AluSp SINE Alu -18 295 1 303 274 76 38 chr6 38880062 38880219 -143535023 + L2 LINE L2 3128 3290 -23 1771 207 34 60 chr6 38881672 38881774 -143533468 + MLT1C LTR MaLR 6 109 -358 1995 114 3 17 chr6 38881774 38882071 -143533171 + AluSq SINE Alu 1 293 -20 1771 207 34 60 chr6 38882071 38882437 -143532805 + MLT1C LTR MaLR 109 462 -5 303 312 232 28 chr6 38882453 38882606 -143532636 + L3 LINE CR1 727 848 -729 2273 106 0 0 chr6 38882606 38882907 -143532335 + AluSx SINE Alu 1 301 -11 303 312 232 28 chr6 38882907 38883176 -143532066 + L3 LINE CR1 848 1235 -342 272 197 16 134 chr6 38883157 38883284 -143531958 - MIR3 SINE MIR 0 208 97 * 244 292 45 11 chr6 38883295 38883384 -143531858 + L3 LINE CR1 1485 1576 -1 1568 85 163 60 chr6 38884121 38884404 -143530838 - AluSx SINE Alu 0 312 1 842 138 8 23 chr6 38884586 38884716 -143530526 + FLAM_C SINE Alu 3 130 -3 188 322 17 0 chr6 38884948 38885007 -143530235 + L2 LINE L2 3213 3272 0 31 26 0 0 chr6 38885497 38885535 -143529707 + GC_rich Low_complexity Low_complexity 1 38 0 246 62 0 0 chr6 38886726 38886758 -143528484 + (CA)n Simple_repeat Simple_repeat 1 32 0 230 245 0 0 chr6 38886852 38886901 -143528341 + CT-rich Low_complexity Low_complexity 1 49 0 2178 125 0 0 chr6 38889019 38889331 -143525911 - AluJb SINE Alu 0 312 1 2141 103 10 0 chr6 38889642 38889942 -143525300 - AluSx SINE Alu -9 303 1 206 259 35 0 chr6 38890056 38890114 -143525128 - L2 LINE L2 -1067 2247 2188 207 383 9 0 chr6 38890202 38890317 -143524925 - L2 LINE L2 -1281 2033 1918 1073 244 106 29 chr6 38890332 38890709 -143524533 - MLT1C LTR MaLR -3 464 59 961 87 0 0 chr6 38892430 38892557 -143522685 - AluY SINE Alu -8 303 177 1724 88 4 28 chr6 38892557 38892808 -143522434 - AluY SINE Alu -66 245 1 1506 126 9 0 chr6 38892976 38893199 -143522043 - AluSg/x SINE Alu -3 309 85 1567 172 62 10 chr6 38893260 38893551 -143521691 + AluJb SINE Alu 1 306 -6 1797 152 14 3 chr6 38894235 38894518 -143520724 - AluJo SINE Alu -17 295 10 365 275 96 62 chr6 38895623 38895770 -143519472 - MIR SINE MIR 0 262 107 2205 75 0 0 chr6 38895770 38896048 -143519194 + AluSp SINE Alu 18 295 -18 365 275 96 62 chr6 38896048 38896078 -143519164 - MIR SINE MIR -155 107 79 375 303 77 53 chr6 38896102 38896141 -143519101 - L1M4 LINE L1 -1691 4455 4418 2034 125 7 3 chr6 38896141 38896444 -143518798 - AluSq SINE Alu -9 304 1 375 303 77 53 chr6 38896444 38896612 -143518630 - L1M4 LINE L1 -1728 4418 4243 2105 147 0 0 chr6 38896634 38896946 -143518296 - AluSx SINE Alu 0 312 1 1560 142 110 14 chr6 38896961 38897242 -143518000 - AluSg1 SINE Alu -1 308 1 2352 89 0 0 chr6 38897295 38897597 -143517645 - AluSc SINE Alu -7 302 1 1843 166 0 0 chr6 38897608 38897897 -143517345 - AluJb SINE Alu -18 294 6 718 215 19 68 chr6 38898538 38898743 -143516499 - MLT1J LTR MaLR -78 433 239 350 193 219 44 chr6 38898770 38898884 -143516358 - MER5A DNA MER1_type -7 182 49 254 299 13 13 chr6 38898901 38898978 -143516264 - MLT1J LTR MaLR -298 213 137 2356 72 0 0 chr6 38899167 38899458 -143515784 + AluSg SINE Alu 1 291 -19 2110 113 3 16 chr6 38899652 38899961 -143515281 + AluSg SINE Alu 6 310 0 2204 78 17 7 chr6 38899970 38900266 -143514976 + AluSp SINE Alu 1 299 -14 288 145 32 0 chr6 38900415 38900477 -143514765 + L1M LINE L1 5257 5320 -848 694 491 115 4 chr6 38900506 38900775 -143514467 - AluJo SINE Alu -3 299 1 396 119 59 153 chr6 38900776 38900894 -143514348 + L1MB3 LINE L1 5461 5567 -616 1792 173 27 85 chr6 38900908 38901149 -143514093 - MER21B LTR ERV1 -3 860 651 6079 36 12 14 chr6 38901149 38901892 -143513350 - SVA Other Other 0 1386 645 1792 173 27 85 chr6 38901892 38902060 -143513182 - MER21B LTR ERV1 -212 651 475 448 125 62 0 chr6 38902060 38902140 -143513102 - LTR23 LTR ERV1 0 437 353 2114 90 7 0 chr6 38902176 38902482 -143512760 - AluSg SINE Alu 0 308 1 1857 150 0 7 chr6 38902501 38902795 -143512447 - AluJo SINE Alu -14 298 7 2306 154 133 2 chr6 38902855 38903277 -143511965 - MER21B LTR ERV1 -386 477 1 2705 114 26 42 chr6 38903277 38903399 -143511843 + L1MB3 LINE L1 5561 5683 -500 2299 67 20 3 chr6 38903399 38903697 -143511545 + AluSq SINE Alu 1 303 -10 2705 114 26 42 chr6 38903697 38904031 -143511211 + L1MB3 LINE L1 5683 6010 -173 1761 174 22 63 chr6 38904031 38904089 -143511153 + MER57A LTR ERV1 7 66 -337 2160 109 3 10 chr6 38904089 38904402 -143510840 + AluSp SINE Alu 1 311 -2 1761 174 22 63 chr6 38904402 38904757 -143510485 + MER57A LTR ERV1 66 403 0 579 205 8 8 chr6 38904757 38904879 -143510363 + L1MB3 LINE L1 6006 6127 -56 2299 196 72 24 chr6 38905220 38905801 -143509441 + pTR5 LTR ERV1 734 1342 -1096 2684 246 102 106 chr6 38905813 38906638 -143508604 + LTR12 LTR ERV1 5 826 0 1971 122 3 3 chr6 38906707 38906993 -143508249 + AluSx SINE Alu 2 287 -25 2258 104 3 0 chr6 38907300 38907609 -143507633 - AluSp SINE Alu -3 310 1 1943 98 3 84 chr6 38908299 38908634 -143506608 - AluSq SINE Alu -5 308 1 2136 99 0 0 chr6 38908642 38908926 -143506316 - AluSq SINE Alu 0 313 30 1563 146 62 31 chr6 38909021 38909309 -143505933 - AluJb SINE Alu -15 297 1 983 157 13 0 chr6 38910236 38910395 -143504847 - AluJb SINE Alu -18 294 134 2188 109 3 0 chr6 38910425 38910729 -143504513 + AluSx SINE Alu 3 307 -5 2197 112 0 3 chr6 38910731 38911043 -143504199 + AluSx SINE Alu 1 311 -1 640 242 31 25 chr6 38911414 38911575 -143503667 - MER58B DNA MER1_type -1 340 179 401 46 0 62 chr6 38911678 38911743 -143503499 + AluY SINE Alu 244 304 -7 244 311 135 14 chr6 38911744 38911892 -143503350 - L2 LINE L2 -427 2887 2722 368 296 49 80 chr6 38911922 38912010 -143503232 - MIR SINE MIR -21 241 152 2053 101 3 21 chr6 38912010 38912333 -143502909 + AluSp SINE Alu 1 318 0 368 296 49 80 chr6 38912333 38912347 -143502895 - MIR SINE MIR -110 152 139 2249 85 6 16 chr6 38912347 38912663 -143502579 + AluSp SINE Alu 1 313 0 368 296 49 80 chr6 38912663 38912784 -143502458 - MIR SINE MIR -123 139 23 1347 139 33 19 chr6 38912841 38913056 -143502186 - MER20 DNA MER1_type 0 219 2 198 388 0 10 chr6 38913207 38913310 -143501932 + L2 LINE L2 2753 2854 -460 2002 84 3 51 chr6 38913755 38913901 -143501341 + AluSx SINE Alu 1 152 -220 1782 33 9 0 chr6 38913901 38914112 -143501130 + AluY SINE Alu 92 304 -7 1915 119 0 44 chr6 38914112 38914431 -143500811 + AluSc SINE Alu 1 305 -4 2002 84 3 51 chr6 38914431 38914669 -143500573 + AluSx SINE Alu 150 372 0 284 269 56 92 chr6 38914775 38915024 -143500218 + L2 LINE L2 2939 3178 -94 644 267 226 5 chr6 38915482 38915875 -143499367 + L2 LINE L2 2817 3296 -17 2101 102 3 7 chr6 38915886 38916181 -143499061 - AluSq SINE Alu -19 294 1 282 262 57 47 chr6 38916203 38916371 -143498871 - MIR3 SINE MIR -58 150 1 202 143 14 100 chr6 38916693 38916763 -143498479 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 345 212 119 46 chr6 38916854 38917005 -143498237 - MER91A DNA MER1_type 0 196 35 188 281 0 0 chr6 38917496 38917560 -143497682 - MIR SINE MIR -62 146 83 370 80 0 0 chr6 38919568 38919618 -143495624 + L1PA5 LINE L1 6105 6154 0 1992 145 0 0 chr6 38920056 38920353 -143494889 - AluJb SINE Alu -15 297 1 189 294 219 8 chr6 38920472 38920591 -143494651 - MIR3 SINE MIR -56 152 9 540 301 0 12 chr6 38920851 38921024 -143494218 - MIR3 SINE MIR -7 201 31 369 43 0 0 chr6 38921053 38921100 -143494142 + (TG)n Simple_repeat Simple_repeat 1 47 0 527 233 218 5 chr6 38921776 38921969 -143493273 + MIR SINE MIR 18 251 -11 462 313 50 35 chr6 38923208 38923409 -143491833 + L1MEd LINE L1 520 723 -5396 1490 154 55 18 chr6 38923649 38923922 -143491320 + AluJb SINE Alu 15 297 -15 233 176 0 0 chr6 38924011 38924045 -143491197 + AluSx SINE Alu 1 34 -268 4392 131 23 140 chr6 38924045 38925525 -143489717 - pTR5 LTR ERV1 0 2606 1524 1628 147 19 4 chr6 38925525 38925621 -143489621 + AluSx SINE Alu 31 124 -188 282 29 0 0 chr6 38925621 38925656 -143489586 + (CA)n Simple_repeat Simple_repeat 2 36 0 1628 147 19 4 chr6 38925656 38925818 -143489424 + AluSx SINE Alu 124 293 -19 1398 166 75 23 chr6 38925851 38926116 -143489126 + AluJb SINE Alu 11 289 -23 228 325 205 6 chr6 38926977 38927143 -143488099 + MIR SINE MIR 20 218 -44 1791 142 7 26 chr6 38927153 38927462 -143487780 - AluJo SINE Alu -6 306 4 757 297 73 29 chr6 38927566 38927848 -143487394 + L1MEd LINE L1 680 991 -5128 1607 195 0 13 chr6 38927848 38928150 -143487092 + AluJo SINE Alu 1 298 -14 757 297 73 29 chr6 38928150 38928318 -143486924 + L1MEd LINE L1 991 1150 -4969 237 306 59 0 chr6 38928355 38928440 -143486802 - L2 LINE L2 -6 3307 3218 1908 100 64 0 chr6 38928594 38928875 -143486367 + AluSg SINE Alu 12 310 0 279 369 0 0 chr6 38928878 38929027 -143486215 + HAL1 LINE L1 1460 1608 -899 389 248 98 15 chr6 38929113 38929246 -143485996 + L1MC5 LINE L1 7603 7746 -215 5649 149 121 30 chr6 38929254 38930425 -143484817 - MER52C LTR ERV1 0 1278 1 337 327 92 9 chr6 38930446 38930663 -143484579 + L1ME LINE L1 5426 5660 -510 1073 126 0 0 chr6 38930763 38930922 -143484320 - AluSp/q SINE Alu 0 313 155 313 163 0 0 chr6 38930922 38930971 -143484271 - pTR5 LTR ERV1 -1648 790 742 907 140 0 0 chr6 38930971 38931114 -143484128 + AluSg/x SINE Alu 146 288 -22 257 273 121 29 chr6 38931117 38931577 -143483665 + L1MC4 LINE L1 7253 7868 -174 2023 102 3 33 chr6 38931999 38932291 -143482951 + AluSc SINE Alu 1 285 -24 186 0 40 0 chr6 38932291 38932316 -143482926 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2023 102 3 33 chr6 38932316 38932327 -143482915 + AluSc SINE Alu 285 295 -14 1844 90 0 0 chr6 38932419 38932642 -143482600 + AluSg SINE Alu 60 282 -28 253 0 0 0 chr6 38932642 38932670 -143482572 + (TAAA)n Simple_repeat Simple_repeat 2 140 0 572 184 40 8 chr6 38932865 38932990 -143482252 + AluY SINE Alu 5 133 -178 2157 108 0 4 chr6 38933117 38933395 -143481847 + AluSg SINE Alu 5 281 -29 291 28 0 0 chr6 38933396 38933432 -143481810 + (CA)n Simple_repeat Simple_repeat 2 37 0 843 290 10 48 chr6 38933447 38933594 -143481648 - ERVL LTR ERVL -3568 2196 2066 1551 184 20 16 chr6 38933594 38933898 -143481344 - AluJo SINE Alu -1 311 7 843 290 10 48 chr6 38933898 38934064 -143481178 - ERVL LTR ERVL -3698 2066 1895 1937 137 7 11 chr6 38934088 38934395 -143480847 - AluJb SINE Alu 0 306 1 2221 107 7 0 chr6 38934431 38934913 -143480329 - AluSg SINE Alu 0 310 1 1102 347 39 38 chr6 38935155 38936009 -143479233 - ERVL LTR ERVL -4064 1590 736 443 345 0 0 chr6 38936133 38936304 -143478938 - ERVL LTR ERVL -5148 616 446 799 163 8 0 chr6 38936317 38936440 -143478802 - FLAM_C SINE Alu -8 125 2 2188 105 10 7 chr6 38936831 38937127 -143478115 - AluSp SINE Alu -16 297 1 395 228 8 41 chr6 38937145 38937268 -143477974 - LTR41 LTR ERVL -6 767 649 597 178 8 8 chr6 38937780 38937898 -143477344 - LTR41 LTR ERVL -585 188 71 768 176 16 0 chr6 38937920 38938045 -143477197 + FLAM_A SINE Alu 1 127 -6 357 214 125 0 chr6 38938162 38938274 -143476968 + L1M4 LINE L1 4163 4288 -1858 1422 115 0 0 chr6 38938289 38938481 -143476761 - AluSq SINE Alu -3 310 119 242 254 0 0 chr6 38944285 38944344 -143470898 + C-rich Low_complexity Low_complexity 5 63 0 201 178 22 0 chr6 38944809 38944854 -143470388 + C-rich Low_complexity Low_complexity 4 49 0 238 260 20 0 chr6 38945429 38945479 -143469763 + MIR SINE MIR 40 90 -118 233 196 0 0 chr6 38947082 38947128 -143468114 + GA-rich Low_complexity Low_complexity 3 48 0 2109 108 0 11 chr6 38949106 38949414 -143465828 - AluY SINE Alu 0 305 1 2260 117 3 0 chr6 38949517 38949824 -143465418 - AluSx SINE Alu -4 308 1 887 143 0 0 chr6 38949826 38949952 -143465290 - AluJo/FLAM SINE Alu -175 127 2 333 336 0 15 chr6 38950577 38950708 -143464534 - LTR67 LTR ERVL -3 554 426 432 209 88 0 chr6 38951428 38951519 -143463723 + MIR SINE MIR 163 261 -1 4848 29 0 3 chr6 38951595 38952189 -143463053 + L1PA3 LINE L1 5296 5887 -268 1290 164 41 92 chr6 38952338 38952729 -143462513 - L1MA9 LINE L1 -187 6125 5755 * 1649 187 13 3 chr6 38952726 38953036 -143462206 + L1M2 LINE L1 5409 5721 -591 1633 143 0 123 chr6 38953049 38953193 -143462049 + AluJo SINE Alu 1 80 -232 2152 125 0 0 chr6 38953193 38953482 -143461760 - AluSx SINE Alu -9 303 15 1633 143 0 123 chr6 38953482 38953679 -143461563 + AluJo SINE Alu 80 300 -12 3136 163 54 12 chr6 38953686 38954366 -143460876 - L1MB4 LINE L1 0 6678 5772 534 70 0 0 chr6 38954370 38954441 -143460801 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1202 104 0 25 chr6 38954446 38954609 -143460633 - AluSp SINE Alu -30 283 125 339 109 0 0 chr6 38954613 38954668 -143460574 - L1MB4 LINE L1 -883 5761 5707 * 351 176 19 102 chr6 38954647 38954755 -143460487 - L1M4 LINE L1 -4968 1574 1476 1154 176 7 26 chr6 38954768 38955040 -143460202 - L1MB4 LINE L1 -941 5703 5437 * 1888 188 65 2 chr6 38955026 38955473 -143459769 - L1MB4 LINE L1 -4606 2040 1566 7829 21 0 6 chr6 38955473 38956592 -143458650 - L1PA3 LINE L1 0 6155 5041 10883 37 1 113 chr6 38956597 38958153 -143457089 - SVA Other Other -2 1384 2 263 195 0 32 chr6 38958162 38958285 -143456957 + GA-rich Low_complexity Low_complexity 3 121 0 456 203 7 22 chr6 38958286 38958424 -143456818 - L1MB4 LINE L1 -4963 1579 1444 194 0 0 37 chr6 38958425 38958452 -143456790 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 622 200 64 0 chr6 38958452 38958577 -143456665 - AluJo/FRAM SINE Alu -1 311 179 1263 167 5 0 chr6 38958577 38958775 -143456467 + AluJb SINE Alu 109 307 -5 180 307 40 69 chr6 38958877 38958978 -143456264 + L2 LINE L2 2145 2242 -1072 2389 108 0 9 chr6 38958983 38959298 -143455944 - AluSx SINE Alu 0 312 1 435 298 209 11 chr6 38959487 38959856 -143455386 + L2 LINE L2 2324 2765 -549 481 165 304 0 chr6 38960108 38960223 -143455019 + L1PA16 LINE L1 6006 6155 -11 230 171 0 0 chr6 38960231 38960272 -143454970 + MER41C LTR ERV1 386 426 -128 2221 113 0 0 chr6 38960379 38960685 -143454557 - AluSx SINE Alu 0 306 1 712 179 0 45 chr6 38960688 38960822 -143454420 - AluJo/FLAM SINE Alu -182 130 3 753 329 115 19 chr6 38960994 38961542 -143453700 - L2 LINE L2 -326 2946 2338 2166 101 45 0 chr6 38961542 38961829 -143453413 + AluSx SINE Alu 1 300 -12 753 329 115 19 chr6 38961829 38961860 -143453382 - L2 LINE L2 -934 2338 2311 514 201 75 0 chr6 38961889 38962023 -143453219 - Cheshire DNA MER1_type -2 2418 2275 998 118 20 0 chr6 38962025 38962178 -143453064 - MSTC LTR MaLR -51 377 222 3063 125 91 65 chr6 38962182 38962298 -143452944 - Cheshire DNA MER1_type -146 2274 2162 2244 107 3 3 chr6 38962298 38962598 -143452644 - AluSx SINE Alu -12 300 1 3063 125 91 65 chr6 38962598 38962770 -143452472 - Cheshire DNA MER1_type -258 2162 1996 2790 82 3 0 chr6 38962770 38963122 -143452120 + THE1A LTR MaLR 3 355 0 12160 90 5 0 chr6 38963122 38964695 -143450547 + THE1A-int LTR MaLR 1 1580 0 2567 90 17 22 chr6 38964695 38965052 -143450190 + THE1A LTR MaLR 1 355 0 3063 125 91 65 chr6 38965052 38965164 -143450078 - Cheshire DNA MER1_type -424 1996 1888 1829 145 10 24 chr6 38965164 38965453 -143449789 - AluJb SINE Alu -17 295 11 3063 125 91 65 chr6 38965453 38965721 -143449521 - Cheshire DNA MER1_type -532 1888 1585 1848 160 3 10 chr6 38965721 38966021 -143449221 + AluSx SINE Alu 1 298 -14 2205 101 6 15 chr6 38966027 38966353 -143448889 + L1PA15 LINE L1 5838 6160 -5 1982 178 0 6 chr6 38966353 38966695 -143448547 - MLT2C1 LTR ERVL -57 340 1 610 203 0 8 chr6 38966711 38966838 -143448404 - Cheshire DNA MER1_type -919 1501 1376 1143 183 193 19 chr6 38966838 38967149 -143448093 - MLT1A1 LTR MaLR 0 365 1 * 3783 174 36 38 chr6 38967149 38967932 -143447310 - Cheshire DNA MER1_type -1053 1367 584 2345 91 0 3 chr6 38967932 38968228 -143447014 - AluY SINE Alu -16 295 1 3783 174 36 38 chr6 38968228 38968269 -143446973 - Cheshire DNA MER1_type -1836 584 543 2237 105 6 26 chr6 38968269 38968582 -143446660 - AluSx SINE Alu -5 307 1 3783 174 36 38 chr6 38968582 38968608 -143446634 - Cheshire DNA MER1_type -1877 543 518 1865 179 10 0 chr6 38968611 38968918 -143446324 + AluJb SINE Alu 1 310 -2 476 59 0 0 chr6 38968941 38969009 -143446233 + L1PB1 LINE L1 6084 6151 0 693 152 25 61 chr6 38969039 38969236 -143446006 + L1MC5 LINE L1 7334 7523 -438 294 29 0 0 chr6 38969244 38969279 -143445963 + U2 snRNA snRNA 1 35 -153 854 203 13 0 chr6 38969285 38969443 -143445799 + FRAM SINE Alu 1 160 -16 375 209 6 101 chr6 38969443 38969601 -143445641 + L1MC5 LINE L1 7522 7664 -297 1693 60 0 28 chr6 38969628 38969845 -143445397 + SVA Other Other 336 546 -840 1048 203 129 0 chr6 39070977 39071218 -143344024 - LTR16C LTR ERVL -32 459 188 351 297 34 0 chr6 39071244 39071362 -143343880 - LTR16C LTR ERVL -369 122 1 321 293 19 76 chr6 39071918 39072075 -143343167 + MER5A DNA MER1_type 1 148 -41 732 191 130 125 chr6 39073225 39073626 -143341616 + LTR15 LTR ERV1 156 590 -5 19171 243 26 35 chr6 39073630 39078265 -143336977 + HERV3 LTR ERV1 1 4593 -3833 3160 249 14 8 chr6 39078297 39079012 -143336230 + HERV3 LTR ERV1 7708 8426 0 826 179 91 111 chr6 39079092 39079488 -143335754 + LTR61 LTR ERV1 208 595 0 554 254 40 45 chr6 39080062 39080239 -143335003 + MER5B DNA MER1_type 3 178 0 203 264 99 11 chr6 39080341 39080432 -143334810 - MIR3 SINE MIR -35 173 75 1125 117 13 0 chr6 39080599 39080753 -143334489 + AluSg/x SINE Alu 133 288 -24 5895 172 36 14 chr6 39081049 39082370 -143332872 + L1PA13 LINE L1 4121 5491 -672 2310 99 14 0 chr6 39082370 39082662 -143332580 - AluSx SINE Alu -16 296 1 5895 172 36 14 chr6 39082662 39083344 -143331898 + L1PA13 LINE L1 5491 6156 -7 250 222 63 0 chr6 39084423 39084486 -143330756 - LTR33A LTR ERVL 0 523 457 575 176 99 168 chr6 39085272 39085335 -143329907 - MLT1F LTR MaLR -2 565 499 243 95 119 0 chr6 39085335 39085377 -143329865 + L1MA5A LINE L1 6245 6291 -6 575 176 99 168 chr6 39085377 39085534 -143329708 - MLT1F LTR MaLR -68 499 322 * 671 254 15 63 chr6 39085533 39085738 -143329504 - MLT1F LTR MaLR -345 197 3 4020 189 54 35 chr6 39086515 39087360 -143327882 - MER21B LTR ERV1 -2 861 1 857 243 117 48 chr6 39087468 39087843 -143327399 - MLT1I LTR MaLR -8 401 1 913 270 77 51 chr6 39088261 39088754 -143326488 - LTR33 LTR ERVL -1 520 15 1624 191 124 11 chr6 39089752 39090108 -143325134 + MSTD LTR MaLR 1 396 0 315 312 104 8 chr6 39090227 39090352 -143324890 + MLT1K LTR MaLR 44 180 -408 278 206 68 14 chr6 39090638 39090711 -143324531 + MLT1K LTR MaLR 509 585 -3 243 0 0 0 chr6 39091325 39091352 -143323890 + (A)n Simple_repeat Simple_repeat 1 27 0 195 254 0 32 chr6 39093101 39093164 -143322078 + L2 LINE L2 3211 3271 -1 1658 169 32 0 chr6 39093680 39093959 -143321283 - AluJo SINE Alu -24 288 1 739 276 276 28 chr6 39094346 39094630 -143320612 - L2 LINE L2 -1 3312 3100 2190 72 0 0 chr6 39094630 39094895 -143320347 + AluY SINE Alu 21 285 -26 739 276 276 28 chr6 39094895 39095435 -143319807 - L2 LINE L2 -213 3100 2695 2188 97 20 7 chr6 39095435 39095733 -143319509 + AluSq SINE Alu 1 302 -11 739 276 276 28 chr6 39095733 39095960 -143319282 - L2 LINE L2 -618 2695 1989 183 277 31 31 chr6 39097061 39097126 -143318116 - L2 LINE L2 -381 2933 2869 486 268 154 22 chr6 39098330 39098688 -143316554 + HAL1 LINE L1 1230 1634 -873 560 257 73 14 chr6 39098691 39099089 -143316153 - LTR16B LTR ERVL 0 464 1 261 270 16 0 chr6 39099534 39099597 -143315645 + HAL1b LINE L1 819 882 -466 461 0 19 0 chr6 39099621 39099674 -143315568 - THE1A LTR MaLR -301 54 1 11972 89 6 1 chr6 39099674 39101242 -143314000 - THE1A-int LTR MaLR 0 1580 5 2355 113 11 8 chr6 39101247 39101600 -143313642 - THE1A LTR MaLR -1 354 1 625 282 171 3 chr6 39102645 39102978 -143312264 - L1MDa LINE L1 -1898 4231 3843 300 263 166 23 chr6 39102964 39103139 -143312103 - L1M4 LINE L1 -1314 4832 4633 * 373 201 127 15 chr6 39103161 39103295 -143311947 - L1M4 LINE L1 -1581 4565 4417 1988 165 39 97 chr6 39103302 39103889 -143311353 - L1MDa LINE L1 -4598 1942 1390 228 148 91 68 chr6 39103989 39104077 -143311165 - L1MDa LINE L1 -5185 1355 1266 2354 98 20 0 chr6 39104127 39104433 -143310809 - AluSx SINE Alu 0 312 1 4426 153 63 21 chr6 39104440 39105284 -143309958 - L1MB3 LINE L1 -1 6182 5304 2806 190 133 20 chr6 39105292 39105996 -143309246 - L1MDa LINE L1 -5342 1198 415 1954 131 10 22 chr6 39106074 39106386 -143308856 - AluSx SINE Alu -4 308 1 908 274 114 43 chr6 39106748 39107700 -143307542 - L1MDa LINE L1 -2993 3136 2117 398 225 109 29 chr6 39107738 39107876 -143307366 + MER104 DNA Tc2 19 167 -13 699 330 95 21 chr6 39108080 39108459 -143306783 - LTR16C LTR ERVL 0 491 85 310 208 75 28 chr6 39109019 39109125 -143306117 - L1MDa LINE L1 -4584 1545 1435 3691 112 52 2 chr6 39109127 39109698 -143305544 - HSMAR2 DNA Mariner 0 1302 703 22 0 0 0 chr6 39110668 39110690 -143304552 + AT_rich Low_complexity Low_complexity 1 22 0 331 222 179 53 chr6 39110919 39111126 -143304116 - L1MDa LINE L1 -4969 1150 918 257 311 0 52 chr6 39111622 39111757 -143303485 + LTR16C LTR ERVL 362 489 -2 2468 89 40 0 chr6 39111876 39112226 -143303016 + L1PA13 LINE L1 5795 6158 -5 686 290 77 0 chr6 39112228 39112449 -143302793 - L1MDa LINE L1 -5313 806 569 580 266 97 10 chr6 39112673 39112880 -143302362 - L1MDa LINE L1 -5878 241 17 584 332 40 20 chr6 39112925 39113037 -143302205 - MIR SINE MIR -2 260 152 1193 317 33 4 chr6 39113037 39113488 -143301754 - LTR16B LTR ERVL 0 464 1 584 332 40 20 chr6 39113488 39113628 -143301614 - MIR SINE MIR -110 152 3 22 35 0 0 chr6 39114261 39114290 -143300952 + AT_rich Low_complexity Low_complexity 1 29 0 240 273 121 0 chr6 39114580 39114679 -143300563 + MLT1J LTR MaLR 105 215 -296 324 306 55 22 chr6 39114703 39114886 -143300356 - LTR33 LTR ERVL -1 520 332 1493 214 146 0 chr6 39114993 39115376 -143299866 - L1ME1 LINE L1 -43 6123 5685 641 137 0 39 chr6 39115376 39115478 -143299764 - Tigger7 DNA MER2_type 0 2587 2490 * 1200 227 64 0 chr6 39115476 39115727 -143299515 - Tigger7 DNA MER2_type -2220 267 1 4036 193 83 55 chr6 39115727 39116841 -143298401 - L1ME1 LINE L1 -480 5686 4526 4697 102 6 0 chr6 39116841 39117488 -143297754 - L1PA12 LINE L1 0 6168 5518 4036 193 83 55 chr6 39117488 39117926 -143297316 - L1ME1 LINE L1 -1640 4526 4102 519 221 64 20 chr6 39117927 39117981 -143297261 + HsTC2 DNA Tc2 1682 1732 -166 2048 141 0 7 chr6 39117981 39118285 -143296957 + AluJb SINE Alu 3 304 -8 519 221 64 20 chr6 39118285 39118434 -143296808 + HsTC2 DNA Tc2 1732 1894 -4 205 180 40 20 chr6 39118459 39118509 -143296733 - MER91C DNA MER1_type -57 83 33 1677 257 52 15 chr6 39118698 39119157 -143296085 - LTR40a LTR ERVL -2 517 42 803 304 75 23 chr6 39119278 39119584 -143295658 + MLT1J2 LTR MaLR 1 322 -128 1102 197 5 0 chr6 39120214 39120412 -143294830 + MER58A DNA MER1_type 26 224 0 561 287 48 38 chr6 39121851 39122125 -143293117 + MLT1K LTR MaLR 2 267 -342 268 288 56 31 chr6 39122221 39122381 -143292861 + MLT1K LTR MaLR 401 564 -24 190 270 0 90 chr6 39122410 39122499 -143292743 + L2 LINE L2 1352 1432 -1882 1923 136 25 7 chr6 39122636 39122922 -143292320 - AluSx SINE Alu -21 291 1 237 299 117 45 chr6 39123096 39123497 -143291745 - L2 LINE L2 -1015 2299 1870 366 300 112 54 chr6 39123565 39124029 -143291213 - LTR16C LTR ERVL 0 491 1 488 115 39 13 chr6 39124441 39124519 -143290723 - MADE1 DNA Mariner 0 80 1 996 243 110 36 chr6 39126074 39126411 -143288831 - MLT1A1 LTR MaLR -3 362 1 692 258 74 9 chr6 39126422 39126651 -143288591 - MIR SINE MIR -16 246 3 907 228 137 82 chr6 39127292 39127780 -143287462 - LTR33 LTR ERVL 0 521 7 410 238 133 93 chr6 39128017 39128341 -143286901 + MER46C DNA MER2_type 1 337 -1 1083 94 22 0 chr6 39128392 39128530 -143286712 - AluSq/x SINE Alu -162 150 10 792 149 0 8 chr6 39128530 39128664 -143286578 + AluSp/q SINE Alu 177 309 -4 2084 121 0 29 chr6 39128675 39128982 -143286260 + AluSq SINE Alu 2 299 -14 272 274 43 60 chr6 39129257 39129374 -143285868 + MIR SINE MIR 8 122 -140 273 231 84 56 chr6 39129406 39129599 -143285643 - MIR3 SINE MIR -60 148 3 463 273 87 31 chr6 39130054 39130215 -143285027 - LTR33 LTR ERVL -329 192 23 2399 217 74 6 chr6 39130350 39130875 -143284367 - MLT1F1 LTR MaLR -6 561 1 376 165 10 87 chr6 39131725 39131772 -143283470 - Charlie1b DNA MER1_type -2238 523 487 2092 154 0 20 chr6 39131772 39132116 -143283126 + MER1B DNA MER1_type 1 337 0 376 165 10 87 chr6 39132116 39132171 -143283071 - Charlie1b DNA MER1_type -2274 487 429 889 138 152 33 chr6 39132190 39132421 -143282821 - L1MA8 LINE L1 -3 6288 6042 1367 181 86 26 chr6 39132426 39132734 -143282508 - Charlie1b DNA MER1_type -2327 434 101 2608 53 0 0 chr6 39132734 39133036 -143282206 - AluY SINE Alu -8 303 2 1367 181 86 26 chr6 39133036 39133075 -143282167 - Charlie1b DNA MER1_type -2660 101 66 1142 240 58 58 chr6 39133398 39133613 -143281629 + MLT1I LTR MaLR 81 298 -111 1970 189 89 5 chr6 39133613 39134005 -143281237 + MSTB LTR MaLR 2 426 0 1142 240 58 58 chr6 39134005 39134118 -143281124 + MLT1I LTR MaLR 297 409 0 1766 168 171 23 chr6 39134120 39134518 -143280724 - MSTB2 LTR MaLR 0 457 1 225 323 110 16 chr6 39134554 39134681 -143280561 - L2 LINE L2 -7 3306 3168 686 269 114 67 chr6 39134850 39135281 -143279961 - LTR33 LTR ERVL -70 451 1 564 272 78 37 chr6 39135580 39135753 -143279489 - MLT1G1 LTR MaLR -364 228 60 793 178 167 0 chr6 39135753 39135927 -143279315 - MER3 DNA MER1_type -4 205 3 564 272 78 37 chr6 39135927 39135989 -143279253 - MLT1G1 LTR MaLR -532 60 2 438 263 220 11 chr6 39137398 39137584 -143277658 + MIR SINE MIR 29 253 -9 180 0 0 0 chr6 39137628 39137648 -143277594 + (A)n Simple_repeat Simple_repeat 1 20 0 587 226 50 13 chr6 39137782 39137941 -143277301 + MER96B DNA MER1_type? 250 414 -3 199 296 167 8 chr6 39139462 39139594 -143275648 - MIR SINE MIR -43 219 67 525 235 41 59 chr6 39139747 39139917 -143275325 + MIR SINE MIR 96 262 0 397 287 125 0 chr6 39141748 39141884 -143273358 - MIR SINE MIR -96 166 14 220 289 0 0 chr6 39142026 39142078 -143273164 + MER5B DNA MER1_type 126 177 -1 191 146 125 42 chr6 39142205 39142253 -143272989 - L2 LINE L2 -37 3235 3184 2252 109 7 3 chr6 39142701 39143005 -143272237 - AluSx SINE Alu -7 305 1 387 217 161 56 chr6 39143601 39143762 -143271480 - MER5B DNA MER1_type 0 178 1 219 248 137 38 chr6 39143900 39144041 -143271201 - MIR SINE MIR -63 145 30 205 266 0 78 chr6 39144177 39144200 -143271042 + MIR SINE MIR 13 36 -226 2453 94 0 0 chr6 39144200 39144499 -143270743 + AluY SINE Alu 1 299 -12 205 266 0 78 chr6 39144499 39144539 -143270703 + MIR SINE MIR 36 71 -191 223 289 0 0 chr6 39146033 39146078 -143269164 + C-rich Low_complexity Low_complexity 1 45 0 465 219 76 0 chr6 39147223 39147342 -143267900 - MIR SINE MIR -69 193 66 707 211 125 89 chr6 39147467 39147622 -143267620 + L2 LINE L2 2931 3079 -234 1067 237 66 42 chr6 39147622 39147692 -143267550 + MER58B DNA MER1_type 1 68 -2352 2100 126 0 3 chr6 39147692 39147999 -143267243 - AluSx SINE Alu 0 306 1 1067 237 66 42 chr6 39147999 39148260 -143266982 + MER58B DNA MER1_type 68 341 0 707 211 125 89 chr6 39148260 39148473 -143266769 + L2 LINE L2 3079 3312 -1 287 259 259 0 chr6 39148513 39148671 -143266571 + MIR SINE MIR 53 251 -11 470 247 114 12 chr6 39149385 39149551 -143265691 + MIR3 SINE MIR 17 199 -9 1246 128 90 0 chr6 39150277 39150488 -143264754 + MER30 DNA MER1_type 1 230 0 733 212 84 0 chr6 39150490 39150669 -143264573 + MER3 DNA MER1_type 13 206 -3 1341 91 5 0 chr6 39150823 39151020 -143264222 + L1PA13 LINE L1 5964 6161 -2 290 181 0 14 chr6 39151039 39151111 -143264131 + CT-rich Low_complexity Low_complexity 3 73 0 2388 92 0 0 chr6 39151383 39151678 -143263564 - AluY SINE Alu -16 295 1 2174 120 10 0 chr6 39151808 39152099 -143263143 - AluJb SINE Alu -18 294 1 955 277 149 34 chr6 39152150 39153268 -143261974 - L1ME3A LINE L1 -256 5914 4623 2144 143 0 10 chr6 39153285 39153593 -143261649 - AluSx SINE Alu -7 305 1 21 71 0 0 chr6 39153938 39153980 -143261262 + AT_rich Low_complexity Low_complexity 1 42 0 543 315 120 0 chr6 39154095 39154419 -143260823 - L1ME4a LINE L1 -233 5888 5526 505 294 119 68 chr6 39154685 39155197 -143260045 - L1ME4a LINE L1 -18 6103 827 2634 84 19 3 chr6 39155327 39155695 -143259547 + THE1C LTR MaLR 2 375 0 516 278 133 26 chr6 39156158 39156392 -143258850 + MIR SINE MIR 4 262 0 412 195 8 117 chr6 39156923 39157051 -143258191 + MER81 DNA DNA 1 114 0 257 246 33 0 chr6 39158314 39158375 -143256867 + L2 LINE L2 3249 3311 -2 256 300 25 25 chr6 39158439 39158519 -143256723 + MIR3 SINE MIR 81 160 -48 1238 216 109 11 chr6 39158522 39158869 -143256373 + MER58D DNA MER1_type 4 384 -2 693 294 117 15 chr6 39161609 39161942 -143253300 - LTR33 LTR ERVL 0 521 155 216 265 29 0 chr6 39162160 39162228 -143253014 + L2 LINE L2 3241 3310 -3 254 144 10 87 chr6 39163418 39163522 -143251720 + CT-rich Low_complexity Low_complexity 3 98 0 266 188 101 0 chr6 39165035 39165104 -143250138 - MER5A DNA MER1_type -86 103 28 195 42 0 0 chr6 39167006 39167030 -143248212 + (TCCTG)n Simple_repeat Simple_repeat 1 24 0 268 229 16 0 chr6 39167755 39167816 -143247426 + MER63 DNA MER1_type 5 66 -995 * 422 200 19 25 chr6 39167797 39167925 -143247317 + MER63 DNA MER1_type 701 1056 -5 21 71 0 0 chr6 39167997 39168039 -143247203 + AT_rich Low_complexity Low_complexity 1 42 0 795 195 0 0 chr6 39271452 39271865 -143143377 + (CA)n Simple_repeat Simple_repeat 1 413 0 237 75 57 0 chr6 39271880 39271933 -143143309 + (CA)n Simple_repeat Simple_repeat 2 57 0 364 279 240 0 chr6 39273328 39273536 -143141706 - LTR16C LTR ERVL -58 433 176 295 359 30 24 chr6 39273882 39274049 -143141193 + MIR SINE MIR 49 216 -46 276 250 0 0 chr6 39274635 39274691 -143140551 - MIR SINE MIR -115 147 92 261 227 45 109 chr6 39275080 39275190 -143140052 + MIR SINE MIR 34 146 -62 3207 263 80 26 chr6 39275449 39275488 -143139754 + L2 LINE L2 1612 1647 -1666 2081 132 146 13 chr6 39275488 39275866 -143139376 + MSTA LTR MaLR 1 428 0 3207 263 80 26 chr6 39275866 39277162 -143138080 + L2 LINE L2 1647 3040 -273 2321 134 121 3 chr6 39277162 39277543 -143137699 + MSTB LTR MaLR 1 426 0 3207 263 80 26 chr6 39277543 39277612 -143137630 + L2 LINE L2 3040 3104 -209 475 259 284 5 chr6 39278048 39278249 -143136993 + MIR SINE MIR 6 262 0 533 299 0 7 chr6 39278725 39278872 -143136370 - MIR SINE MIR -99 163 18 870 241 75 17 chr6 39278899 39279265 -143135977 + LTR16C LTR ERVL 40 461 -30 376 223 146 21 chr6 39279651 39279825 -143135417 + MIR SINE MIR 7 193 -15 441 98 63 29 chr6 39280177 39280351 -143134891 + (CA)n Simple_repeat Simple_repeat 1 180 0 491 104 52 23 chr6 39280409 39280582 -143134660 + (CA)n Simple_repeat Simple_repeat 1 178 0 460 157 36 18 chr6 39280661 39280949 -143134293 + (CA)n Simple_repeat Simple_repeat 1 293 0 299 304 50 43 chr6 39281584 39281745 -143133497 + MIR SINE MIR 27 188 -74 195 261 77 39 chr6 39282576 39282706 -143132536 + L2 LINE L2 2840 2974 -339 735 198 208 5 chr6 39282864 39283056 -143132186 + MIR SINE MIR 32 262 0 272 378 112 0 chr6 39284895 39285128 -143130114 + L2 LINE L2 2832 3090 -182 405 283 29 36 chr6 39285299 39285437 -143129805 - L2 LINE L2 -39 3274 3138 202 284 91 23 chr6 39285628 39285716 -143129526 - MIR SINE MIR -55 207 114 189 247 65 13 chr6 39285803 39285880 -143129362 + MIR SINE MIR 65 145 -117 303 331 46 0 chr6 39286317 39286447 -143128795 - MIR SINE MIR -67 195 60 1062 251 125 45 chr6 39287024 39287804 -143127438 + L2 LINE L2 2489 3313 0 453 81 0 0 chr6 39288104 39288166 -143127076 + (CA)n Simple_repeat Simple_repeat 1 62 0 294 290 30 38 chr6 39288413 39288544 -143126698 + MIR SINE MIR 21 150 -112 261 369 49 8 chr6 39288836 39288958 -143126284 - MIR3 SINE MIR -52 156 30 207 0 0 0 chr6 39289518 39289541 -143125701 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 385 330 55 28 chr6 39289709 39289891 -143125351 - MIR3 SINE MIR -16 192 6 802 254 29 0 chr6 39289962 39290167 -143125075 - MIR SINE MIR -50 212 2 197 242 48 16 chr6 39292184 39292246 -143122996 - L2 LINE L2 -1 3271 3208 1321 240 140 14 chr6 39292882 39293311 -143121931 - L2 LINE L2 -3 3310 2828 587 267 155 0 chr6 39293898 39294085 -143121157 + MIR SINE MIR 10 225 -37 1947 155 0 10 chr6 39294085 39294382 -143120860 + AluJb SINE Alu 1 294 -18 1207 107 0 0 chr6 39294382 39294541 -143120701 + AluSx SINE Alu 1 159 -153 312 251 82 76 chr6 39294650 39294822 -143120420 + MIR3 SINE MIR 17 202 -42 243 396 43 11 chr6 39294878 39295065 -143120177 + L2 LINE L2 2018 2210 -1104 513 271 80 63 chr6 39295096 39295398 -143119844 + MLT1I LTR MaLR 71 377 -32 2245 106 3 0 chr6 39295408 39295709 -143119533 - AluSx SINE Alu -6 306 5 2434 46 16 7 chr6 39295720 39295901 -143119341 - AluY SINE Alu -2 309 122 189 0 0 0 chr6 39295901 39295922 -143119320 + (TG)n Simple_repeat Simple_repeat 2 22 0 2434 46 16 7 chr6 39295922 39296046 -143119196 - AluY SINE Alu -189 122 1 186 356 177 23 chr6 39296087 39296432 -143118810 + L2 LINE L2 2268 2665 -649 470 49 49 0 chr6 39296437 39296519 -143118723 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 3664 228 97 54 chr6 39296617 39296811 -143118431 - L1MEc LINE L1 -4812 1584 1400 2171 94 7 0 chr6 39296811 39297098 -143118144 - AluSc SINE Alu -6 303 15 3664 228 97 54 chr6 39297098 39297669 -143117573 - L1MEc LINE L1 -4996 1400 855 2061 134 3 3 chr6 39297669 39297968 -143117274 - AluSx SINE Alu -13 299 1 3664 228 97 54 chr6 39297968 39298650 -143116592 - L1MEc LINE L1 -5541 855 69 1628 204 58 25 chr6 39298650 39299012 -143116230 + MLT1A2 LTR MaLR 1 374 0 3664 228 97 54 chr6 39299012 39299036 -143116206 - L1MEc LINE L1 -6327 69 47 947 253 18 22 chr6 39299152 39299381 -143115861 - MIR SINE MIR -33 229 2 194 270 201 48 chr6 39299580 39299769 -143115473 - L2 LINE L2 -228 3044 2827 206 273 107 27 chr6 39299824 39299974 -143115268 - L2 LINE L2 -575 2739 2578 518 284 7 14 chr6 39300076 39300224 -143115018 + MLT1J LTR MaLR 192 338 -173 733 195 0 0 chr6 39300506 39300629 -143114613 + FLAM_A SINE Alu 10 132 -10 215 299 9 84 chr6 39300860 39300897 -143114345 + MIR SINE MIR 164 202 -60 1024 256 104 19 chr6 39300897 39301272 -143113970 - MLT1I LTR MaLR -2 407 1 215 299 9 84 chr6 39301272 39301341 -143113901 + MIR SINE MIR 202 262 0 677 322 54 25 chr6 39301366 39301530 -143113712 - L2 LINE L2 -69 3244 3086 180 111 0 0 chr6 39301530 39301557 -143113685 + (TG)n Simple_repeat Simple_repeat 1 27 0 677 322 54 25 chr6 39301557 39301845 -143113397 - L2 LINE L2 -227 3086 2775 983 291 228 5 chr6 39301873 39302787 -143112455 + L2 LINE L2 2107 3251 -62 2211 122 0 6 chr6 39302787 39303099 -143112143 - AluSx SINE Alu -2 310 1 983 291 228 5 chr6 39303099 39303181 -143112061 + L2 LINE L2 3251 3313 0 291 93 0 0 chr6 39303664 39303707 -143111535 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 2097 267 60 72 chr6 39304184 39304417 -143110825 + L1MEd LINE L1 31 265 -5995 1292 171 14 0 chr6 39304417 39304628 -143110614 - MER20 DNA MER1_type -3 216 3 2097 267 60 72 chr6 39304628 39305222 -143110020 + L1MEd LINE L1 265 876 -5384 1340 193 10 53 chr6 39305222 39305522 -143109720 - AluJb SINE Alu -25 287 1 2097 267 60 72 chr6 39305522 39306039 -143109203 + L1MEd LINE L1 876 1398 -4862 210 256 70 77 chr6 39307067 39307211 -143108031 + MIR SINE MIR 42 187 -63 449 259 58 7 chr6 39308097 39308236 -143107006 + MIR SINE MIR 47 192 -70 234 244 0 0 chr6 39308497 39308542 -143106700 + MIR SINE MIR 42 86 -176 1986 106 23 23 chr6 39308558 39308861 -143106381 - AluJb SINE Alu -9 303 1 1135 228 58 26 chr6 39310040 39310387 -143104855 - LTR37A LTR ERV1 -28 398 41 24 0 0 0 chr6 39310584 39310608 -143104634 + AT_rich Low_complexity Low_complexity 1 24 0 1411 170 121 0 chr6 39310624 39310889 -143104353 + AluJb SINE Alu 1 297 -15 691 204 0 0 chr6 39310944 39311086 -143104156 - L1ME3 LINE L1 -25 6137 5996 839 182 0 0 chr6 39311097 39311229 -143104013 + FLAM_C SINE Alu 1 132 -1 1824 104 65 57 chr6 39311256 39311783 -143103459 + MER51A LTR ERV1 1 616 -18 827 201 13 13 chr6 39311788 39311947 -143103295 + AluJb SINE Alu 153 311 -1 2760 235 54 18 chr6 39311950 39313418 -143101824 - L1ME3 LINE L1 -164 5998 4479 262 302 206 0 chr6 39313703 39313829 -143101413 + MIR SINE MIR 98 249 -13 487 279 169 5 chr6 39314303 39314504 -143100738 - MIR SINE MIR -13 249 16 1353 241 71 21 chr6 39314987 39315368 -143099874 + L2 LINE L2 2912 3311 -2 321 132 0 0 chr6 39315474 39315527 -143099715 - MLT1I LTR MaLR -7 402 350 239 152 22 0 chr6 39317055 39317101 -143098141 + MLT1J LTR MaLR 85 131 -380 2072 121 3 3 chr6 39317252 39317559 -143097683 - AluSq SINE Alu -6 307 1 385 256 43 43 chr6 39317747 39317958 -143097284 - L1MC4 LINE L1 -1 8041 7831 387 291 67 39 chr6 39318035 39318115 -143097127 - L1ME2 LINE L1 -20 6144 6068 2244 92 3 0 chr6 39318115 39318408 -143096834 - AluSq SINE Alu -19 294 1 387 291 67 39 chr6 39318408 39318506 -143096736 - L1ME2 LINE L1 -96 6068 5961 612 271 79 110 chr6 39318509 39318900 -143096342 + MLT1J LTR MaLR 85 463 -48 323 228 22 11 chr6 39319106 39319198 -143096044 - MLT1J LTR MaLR -6 505 413 227 217 0 0 chr6 39319897 39319943 -143095299 + (TAA)n Simple_repeat Simple_repeat 2 47 0 220 274 32 0 chr6 39319983 39320045 -143095197 - MIR SINE MIR -81 181 118 1916 160 0 3 chr6 39320046 39320352 -143094890 + AluJb SINE Alu 1 305 -7 207 0 0 0 chr6 39320362 39320385 -143094857 + (GA)n Simple_repeat Simple_repeat 1 23 0 227 224 122 56 chr6 39320385 39320492 -143094750 - MIR SINE MIR -128 134 21 396 295 29 0 chr6 39320526 39320631 -143094611 + MIR SINE MIR 47 154 -108 266 264 45 73 chr6 39321650 39321760 -143093482 + MIR3 SINE MIR 93 199 -9 494 258 25 0 chr6 39322074 39322194 -143093048 - MIR3 SINE MIR -52 156 34 389 227 84 34 chr6 39322390 39322509 -143092733 - L2 LINE L2 -4 3309 3185 3843 170 87 72 chr6 39322523 39323870 -143091372 - pTR5 LTR ERV1 0 2438 743 347 284 42 21 chr6 39325607 39325761 -143089481 + MER5B DNA MER1_type 15 182 -7 202 213 21 0 chr6 39326315 39326362 -143088880 + L2 LINE L2 3180 3227 -86 207 224 0 20 chr6 39326852 39326901 -143088341 - L2 LINE L2 -2 3311 3264 305 163 51 41 chr6 39328127 39328225 -143087017 + (CAGG)n Simple_repeat Simple_repeat 3 101 0 234 261 34 23 chr6 39329914 39330002 -143085240 - MIR SINE MIR -80 182 94 422 309 53 57 chr6 39330286 39330568 -143084674 + MLT1J2 LTR MaLR 21 301 -149 377 323 106 28 chr6 39330723 39330940 -143084302 + L3 LINE CR1 1272 1505 -72 247 245 46 93 chr6 39331163 39331314 -143083928 + MIR3 SINE MIR 2 145 -63 216 293 29 115 chr6 39331844 39331996 -143083246 + MIR SINE MIR 32 172 -58 850 224 49 37 chr6 39334645 39334891 -143080351 + MIR SINE MIR 14 262 0 206 254 73 0 chr6 39335784 39335839 -143079403 + MIR SINE MIR 108 166 -96 224 333 33 0 chr6 39336658 39336748 -143078494 + MIR SINE MIR 48 140 -68 676 277 66 0 chr6 39336754 39336920 -143078322 + MER45A DNA AcHobo 1 177 -1 343 303 0 5 chr6 39338130 39338326 -143076916 + (CA)n Simple_repeat Simple_repeat 1 194 0 236 302 21 10 chr6 39338378 39338474 -143076768 + (CA)n Simple_repeat Simple_repeat 1 97 0 202 271 0 0 chr6 39338764 39338812 -143076430 + MIR SINE MIR 74 121 -87 315 216 205 0 chr6 39339585 39339683 -143075559 + MIR SINE MIR 38 152 -58 240 143 0 0 chr6 39339809 39339851 -143075391 + (TC)n Simple_repeat Simple_repeat 2 43 0 1362 266 172 10 chr6 39339851 39339886 -143075356 + L2 LINE L2 2149 2177 -1137 2017 153 0 3 chr6 39339886 39340199 -143075043 - AluSx SINE Alu 0 312 1 1362 266 172 10 chr6 39340199 39340790 -143074452 + L2 LINE L2 2177 2877 -437 325 286 90 0 chr6 39340880 39341013 -143074229 - MIR3 SINE MIR -63 145 1 324 308 15 30 chr6 39341378 39341511 -143073731 + G-rich Low_complexity Low_complexity 4 134 0 228 198 25 12 chr6 39341540 39341621 -143073621 + GA-rich Low_complexity Low_complexity 1 82 0 276 252 67 34 chr6 39343033 39343143 -143072099 - MIR3 SINE MIR -72 136 23 571 230 178 0 chr6 39343143 39343295 -143071947 + MER5A DNA MER1_type 4 182 -7 2206 121 0 0 chr6 39343766 39344073 -143071169 + AluSc SINE Alu 1 307 -2 452 256 60 15 chr6 39344330 39344463 -143070779 + MIR3 SINE MIR 9 147 -61 535 238 33 0 chr6 39344541 39344663 -143070579 + L2 LINE L2 3187 3312 -1 288 349 127 0 chr6 39345044 39345170 -143070072 + MIR SINE MIR 118 259 -3 189 171 24 0 chr6 39345734 39345775 -143069467 - MIR SINE MIR -67 141 100 191 157 41 19 chr6 39347434 39347486 -143067756 - MIR SINE MIR -70 138 93 290 304 43 11 chr6 39347741 39347833 -143067409 + MIR SINE MIR 118 212 -50 493 261 128 57 chr6 39348023 39348153 -143067089 - MIR SINE MIR -3 259 107 1845 139 0 46 chr6 39348153 39348456 -143066786 + AluSx SINE Alu 3 291 -21 493 261 128 57 chr6 39348456 39348536 -143066706 - MIR SINE MIR -155 107 34 226 341 146 0 chr6 39349185 39349349 -143065893 - MIR3 SINE MIR -1 207 20 231 146 0 0 chr6 39350204 39350245 -143064997 + (CA)n Simple_repeat Simple_repeat 1 41 0 307 389 0 0 chr6 39350245 39350335 -143064907 + L1MC4 LINE L1 6614 6703 -1339 * 326 366 0 0 chr6 39350276 39350369 -143064873 - L1MC4 LINE L1 -1336 6706 6614 288 242 14 39 chr6 39350490 39350608 -143064634 - MIR SINE MIR -82 126 18 667 238 85 0 chr6 39350995 39351159 -143064083 + MER5B DNA MER1_type 1 178 0 600 257 40 7 chr6 39351162 39351314 -143063928 - MER5B DNA MER1_type -10 168 12 254 321 57 28 chr6 39351348 39351454 -143063788 - MIR SINE MIR -65 197 89 2161 105 3 10 chr6 39351474 39351779 -143063463 - AluSq SINE Alu -10 303 1 305 275 12 0 chr6 39352135 39352215 -143063027 + MER94 DNA DNA 2 82 -52 365 290 59 95 chr6 39352320 39352489 -143062753 + MIR SINE MIR 76 238 -24 292 285 58 80 chr6 39353021 39353158 -143062084 + MIR SINE MIR 10 143 -119 616 318 60 25 chr6 39353205 39353488 -143061754 + L2 LINE L2 3019 3311 -2 1213 166 38 5 chr6 39354784 39354995 -143060247 - MER20 DNA MER1_type -1 218 1 328 259 173 17 chr6 39355020 39355224 -143060018 + MIR SINE MIR 20 261 -1 288 319 88 0 chr6 39355613 39355726 -143059516 + MIR3 SINE MIR 81 203 -5 215 308 0 13 chr6 39356172 39356250 -143058992 + GA-rich Low_complexity Low_complexity 3 79 0 259 303 46 13 chr6 39357178 39357320 -143057922 - MIR SINE MIR -3 205 54 196 268 36 0 chr6 39358551 39358607 -143056635 + L2 LINE L2 3129 3186 -86 776 307 63 8 chr6 39358714 39358952 -143056290 - MIR SINE MIR -5 257 7 401 243 36 18 chr6 39359492 39359595 -143055647 + MIR SINE MIR 26 133 -129 972 211 81 36 chr6 39359595 39359842 -143055400 + MIR SINE MIR 5 262 0 379 230 0 0 chr6 39360217 39360291 -143054951 - MIR SINE MIR -56 152 79 220 243 54 72 chr6 39360643 39360754 -143054488 - L2 LINE L2 -186 3086 2978 216 145 97 16 chr6 39360786 39360848 -143054394 - L2 LINE L2 -26 3246 3180 210 262 0 0 chr6 39360848 39360890 -143054352 + (CA)n Simple_repeat Simple_repeat 1 42 0 769 293 92 9 chr6 39361547 39361776 -143053466 - MIR SINE MIR 0 262 15 476 258 192 0 chr6 39362095 39362277 -143052965 - MIR SINE MIR -17 245 29 244 119 0 51 chr6 39362684 39362743 -143052499 + L1MC4 LINE L1 7029 7084 -958 276 246 148 25 chr6 39363060 39363182 -143052060 - MIR3 SINE MIR -7 201 65 294 328 56 40 chr6 39363415 39363829 -143051413 + L1ME4a LINE L1 5544 5959 -162 504 233 8 17 chr6 39363829 39363949 -143051293 + L2 LINE L2 3194 3312 -1 276 98 24 0 chr6 39364644 39364685 -143050557 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 944 145 0 6 chr6 39364687 39364866 -143050376 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 530 190 8 0 chr6 39364838 39364959 -143050283 + CT-rich Low_complexity Low_complexity 1 122 0 * 334 282 48 24 chr6 39365297 39365421 -143049821 - L2 LINE L2 -14 3299 3173 23 33 0 0 chr6 39366243 39366273 -143048969 + AT_rich Low_complexity Low_complexity 1 30 0 441 54 0 0 chr6 39366485 39366541 -143048701 + (CA)n Simple_repeat Simple_repeat 2 57 0 369 0 0 0 chr6 39366971 39367012 -143048230 + (TG)n Simple_repeat Simple_repeat 1 41 0 201 278 0 0 chr6 39367145 39367199 -143048043 + L2 LINE L2 2932 2985 -328 206 231 0 0 chr6 39368260 39368312 -143046930 + (CA)n Simple_repeat Simple_repeat 1 52 0 360 0 0 0 chr6 39368387 39368427 -143046815 + (CA)n Simple_repeat Simple_repeat 2 41 0 2224 90 0 3 chr6 39368717 39369007 -143046235 - AluSg SINE Alu -21 289 1 339 278 87 8 chr6 39369032 39369158 -143046084 - MIR SINE MIR -113 149 14 462 248 75 6 chr6 39369189 39369346 -143045896 + MIR SINE MIR 6 176 -63 448 238 9 0 chr6 39369570 39369675 -143045567 + MIR SINE MIR 48 153 -109 622 266 18 18 chr6 39370538 39370707 -143044535 + MIR SINE MIR 3 171 -91 275 130 19 0 chr6 39372883 39372937 -143042305 + (CA)n Simple_repeat Simple_repeat 1 55 0 382 173 236 31 chr6 39373969 39374096 -143041146 - L2 LINE L2 -1 3312 3160 687 270 56 0 chr6 39374506 39374721 -143040521 + L1MC4a LINE L1 5659 5885 -1923 327 164 60 129 chr6 39375046 39375162 -143040080 + L1MC5 LINE L1 7611 7718 -243 924 252 35 17 chr6 39375966 39376196 -143039046 + MIR SINE MIR 27 260 -2 311 250 88 0 chr6 39376686 39376754 -143038488 - L2 LINE L2 -1 3312 3239 209 319 82 0 chr6 39376845 39376980 -143038262 + L2 LINE L2 2915 3060 -212 231 61 0 0 chr6 39377502 39377535 -143037707 + (TG)n Simple_repeat Simple_repeat 1 33 0 467 294 211 16 chr6 39377601 39377965 -143037277 - L2 LINE L2 0 3313 2879 296 263 13 0 chr6 39377965 39378041 -143037201 + (TG)n Simple_repeat Simple_repeat 2 78 0 445 340 111 21 chr6 39378550 39378785 -143036457 + MIR SINE MIR 7 262 0 266 367 23 16 chr6 39378796 39378924 -143036318 - MIR SINE MIR -98 164 36 273 306 14 24 chr6 39381133 39381280 -143033962 - L2 LINE L2 0 3313 3126 552 306 85 17 chr6 39381310 39381604 -143033638 + MLT1I LTR MaLR 96 409 0 1073 218 48 4 chr6 39381767 39381996 -143033246 - MIR SINE MIR -1 261 23 214 255 20 0 chr6 39382037 39382088 -143033154 + (CA)n Simple_repeat Simple_repeat 2 53 0 1211 224 108 32 chr6 39382897 39383334 -143031908 + L2 LINE L2 2826 3295 -18 227 355 24 24 chr6 39383344 39383468 -143031774 - MIR SINE MIR -70 192 69 352 129 32 0 chr6 39384322 39384384 -143030858 + MIR SINE MIR 74 137 -71 616 255 111 28 chr6 39384965 39385181 -143030061 - MIR SINE MIR -16 246 13 324 203 54 0 chr6 39385311 39385385 -143029857 + MIR3 SINE MIR 90 167 -41 1752 269 147 38 chr6 39385991 39386705 -143028537 + L2 LINE L2 1936 2774 -540 2281 110 0 0 chr6 39386705 39387015 -143028227 + AluSx SINE Alu 1 310 -2 1752 269 147 38 chr6 39387015 39387219 -143028023 + L2 LINE L2 2774 2954 -360 440 313 0 33 chr6 39387218 39387368 -143027874 + L2 LINE L2 3130 3274 -39 * 500 371 21 49 chr6 39387906 39388294 -143026948 - L2 LINE L2 -7 3265 2889 294 271 47 0 chr6 39388341 39388426 -143026816 - L2 LINE L2 -674 2640 2552 211 323 0 0 chr6 39388772 39388834 -143026408 + MIR SINE MIR 74 135 -73 549 325 118 0 chr6 39388855 39389083 -143026159 - MIR SINE MIR 0 262 8 589 278 96 0 chr6 39390249 39390458 -143024784 - L3 LINE CR1 -68 1509 1281 1737 128 11 29 chr6 39390623 39390904 -143024338 + AluJo SINE Alu 37 312 0 525 271 118 29 chr6 39390958 39391238 -143024004 + L2 LINE L2 2812 3116 -197 416 51 17 0 chr6 39391672 39391731 -143023511 + (CA)n Simple_repeat Simple_repeat 2 61 0 327 25 0 0 chr6 39391965 39392005 -143023237 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 120 0 40 chr6 39393657 39393732 -143021510 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 1574 170 103 0 chr6 39393737 39394019 -143021223 - AluJo SINE Alu -1 311 1 820 276 144 18 chr6 39394346 39394929 -143020313 + L2 LINE L2 2665 3312 -1 257 377 27 0 chr6 39394960 39395106 -143020136 + L2 LINE L2 2584 2733 -581 233 275 0 14 chr6 39395452 39395521 -143019721 + L2 LINE L2 3245 3312 -1 282 160 0 0 chr6 39395806 39395856 -143019386 + (CGTG)n Simple_repeat Simple_repeat 1 50 0 212 355 105 8 chr6 39396301 39396425 -143018817 + MIR3 SINE MIR 8 143 -65 313 241 63 38 chr6 39396827 39396956 -143018286 + MIR SINE MIR 101 232 -30 298 255 179 0 chr6 39396957 39397063 -143018179 - L2 LINE L2 0 3313 3189 1676 279 49 24 chr6 39397160 39397752 -143017490 + L1ME3 LINE L1 5556 6162 0 463 268 152 19 chr6 39398539 39398808 -143016434 + L1ME4a LINE L1 5808 6112 -9 434 247 44 31 chr6 39398984 39399153 -143016089 + MIR3 SINE MIR 14 141 -67 2169 116 10 0 chr6 39399697 39400000 -143015242 + AluSx SINE Alu 1 306 -6 308 291 131 17 chr6 39400136 39400311 -143014931 + L1MC/D LINE L1 5567 5761 -2047 1098 113 6 12 chr6 39401321 39401481 -143013761 - AluY SINE Alu -152 159 1 230 108 0 0 chr6 39402413 39402450 -143012792 - L2 LINE L2 -20 3252 3216 202 200 0 0 chr6 39402625 39402660 -143012582 + (CAGG)n Simple_repeat Simple_repeat 2 36 0 375 23 0 0 chr6 39403313 39403357 -143011885 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 224 325 0 0 chr6 39403661 39403738 -143011504 - MIR SINE MIR -139 123 47 665 254 129 0 chr6 39404223 39404424 -143010818 - MIR SINE MIR -29 233 7 242 280 133 13 chr6 39404633 39404708 -143010534 - MIR3 SINE MIR -31 177 94 512 328 68 14 chr6 39404817 39405110 -143010132 + L2 LINE L2 2910 3218 -95 435 240 206 0 chr6 39405152 39405298 -143009944 + MER5B DNA MER1_type 3 178 0 2066 66 0 0 chr6 39405575 39405832 -143009410 - AluY SINE Alu -18 293 37 219 256 233 0 chr6 39406626 39406712 -143008530 - MIR SINE MIR -108 154 49 964 172 146 39 chr6 39406734 39406967 -143008275 + MIR SINE MIR 2 259 -3 1078 219 38 4 chr6 39407468 39407733 -143007509 - MER58 DNA MER1_type -2146 274 1 955 322 103 12 chr6 39407832 39408409 -143006833 - L2 LINE L2 -247 3066 2419 673 239 135 57 chr6 39408898 39408961 -143006281 - MIR SINE MIR -11 251 194 2329 99 3 0 chr6 39408961 39409273 -143005969 - AluSq SINE Alu 0 313 1 673 239 135 57 chr6 39409273 39409439 -143005803 - MIR SINE MIR -68 194 4 184 349 12 36 chr6 39409447 39409530 -143005712 + MIR3 SINE MIR 109 189 -19 2336 72 0 0 chr6 39409616 39409906 -143005336 - AluSx SINE Alu -17 295 6 180 353 141 0 chr6 39411267 39411352 -143003890 - MIR SINE MIR -12 250 154 202 200 0 25 chr6 39412498 39412538 -143002704 + C-rich Low_complexity Low_complexity 2 40 0 309 118 0 0 chr6 39412539 39412590 -143002652 + (CA)n Simple_repeat Simple_repeat 2 52 0 217 313 0 31 chr6 39412745 39412841 -143002401 + GA-rich Low_complexity Low_complexity 4 96 0 255 203 0 0 chr6 39413152 39413211 -143002031 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 276 272 46 4 chr6 39414795 39414886 -143000356 - MIR3 SINE MIR -53 155 77 207 0 0 0 chr6 39415260 39415283 -142999959 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 204 259 0 17 chr6 39415659 39415717 -142999525 + MIR SINE MIR 96 152 -56 254 318 42 34 chr6 39415949 39416095 -142999147 - MIR SINE MIR -62 146 46 229 311 10 29 chr6 39416529 39416632 -142998610 + MER20B DNA MER1_type 62 162 -621 685 233 19 13 chr6 39416698 39416857 -142998385 - MIR SINE MIR -27 235 76 234 263 18 0 chr6 39416890 39416947 -142998295 + MIR3 SINE MIR 149 206 -2 378 0 0 0 chr6 39417160 39417202 -142998040 + (CA)n Simple_repeat Simple_repeat 2 43 0 186 71 0 0 chr6 39417523 39417551 -142997691 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 232 292 0 15 chr6 39417788 39417853 -142997389 + CT-rich Low_complexity Low_complexity 6 69 0 1916 137 0 38 chr6 39418179 39418492 -142996750 - AluJb SINE Alu -11 301 1 183 200 133 27 chr6 39419341 39419416 -142995826 + L2 LINE L2 3188 3270 -2 237 232 0 0 chr6 39420066 39420122 -142995120 + L2 LINE L2 3000 3055 -217 1317 263 69 36 chr6 39420466 39421029 -142994213 - L2 LINE L2 -7 3306 2728 23 0 0 0 chr6 39424867 39424890 -142990352 + GC_rich Low_complexity Low_complexity 1 23 0 200 161 16 0 chr6 39426161 39426223 -142989019 + (CGAG)n Simple_repeat Simple_repeat 2 64 0 270 242 0 0 chr6 39426818 39426880 -142988362 - MIR SINE MIR -66 142 81 269 310 0 23 chr6 39427596 39427683 -142987559 + L2 LINE L2 3188 3272 0 304 271 153 0 chr6 39428056 39428174 -142987068 + MIR SINE MIR 34 169 -93 496 330 20 30 chr6 39428174 39428371 -142986871 + MER91A DNA MER1_type 1 195 -1 288 0 0 0 chr6 39428499 39428531 -142986711 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 339 155 0 0 chr6 39428968 39429052 -142986190 + (CA)n Simple_repeat Simple_repeat 2 85 0 252 323 95 25 chr6 39429240 39429398 -142985844 + MIR3 SINE MIR 3 171 -37 352 295 48 36 chr6 39429613 39429779 -142985463 - L3b LINE CR1 -174 1409 1242 723 272 117 20 chr6 39430416 39430714 -142984528 + MER46C DNA MER2_type 12 338 0 206 208 38 19 chr6 39431897 39431950 -142983292 + CT-rich Low_complexity Low_complexity 5 58 0 205 250 0 0 chr6 39433121 39433165 -142982077 + CT-rich Low_complexity Low_complexity 3 46 0 233 233 44 100 chr6 39433561 39433651 -142981591 - MIR SINE MIR -70 192 108 1524 139 24 124 chr6 39434202 39434541 -142980701 + AluYb8 SINE Alu 1 305 -13 218 297 68 0 chr6 39434748 39434822 -142980420 + MIR SINE MIR 102 180 -82 239 250 0 0 chr6 39435129 39435181 -142980061 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 342 0 0 0 chr6 39435189 39435227 -142980015 + (CA)n Simple_repeat Simple_repeat 2 39 0 560 209 92 43 chr6 39436033 39436122 -142979120 + MER5B DNA MER1_type 1 84 -94 678 137 97 24 chr6 39436122 39436246 -142978996 - FLAM_C SINE Alu 0 133 1 560 209 92 43 chr6 39436246 39436319 -142978923 + MER5B DNA MER1_type 84 171 -7 1985 125 51 0 chr6 39436695 39437019 -142978223 + AluSx SINE Alu 1 339 0 242 300 27 10 chr6 39437213 39437308 -142977934 - MIR SINE MIR -55 153 85 761 165 79 82 chr6 39437353 39437620 -142977622 + L1ME3A LINE L1 5827 6092 -78 1699 173 0 26 chr6 39437651 39437957 -142977285 + AluJo SINE Alu 5 302 -10 1801 106 0 46 chr6 39438868 39439150 -142976092 + AluJb SINE Alu 1 269 -43 1184 138 87 0 chr6 39439569 39439765 -142975477 + AluJb SINE Alu 90 302 -10 27 36 0 36 chr6 39439812 39439835 -142975407 + AT_rich Low_complexity Low_complexity 1 23 -31 1717 136 0 112 chr6 39439835 39440166 -142975076 + AluSx SINE Alu 1 294 -18 27 36 0 36 chr6 39440166 39440198 -142975044 + AT_rich Low_complexity Low_complexity 23 54 0 2279 94 0 10 chr6 39440414 39440712 -142974530 + AluSx SINE Alu 1 295 -17 1441 274 96 6 chr6 39440964 39441432 -142973810 - MER97c DNA MER1_type? -574 516 7 321 291 88 34 chr6 39441556 39441704 -142973538 + L2 LINE L2 3114 3269 -3 2511 47 7 3 chr6 39441974 39442271 -142972971 + AluY SINE Alu 1 298 -13 314 208 30 89 chr6 39442366 39442467 -142972775 - MIR SINE MIR -148 114 20 193 388 10 10 chr6 39442806 39442904 -142972338 + MIR SINE MIR 46 143 -65 1856 174 0 7 chr6 39444995 39445288 -142969954 - AluJo SINE Alu -19 293 3 1820 134 19 49 chr6 39445293 39445458 -142969784 - AluJb SINE Alu -14 298 145 1898 97 60 8 chr6 39445458 39445726 -142969516 - AluSp SINE Alu -14 299 18 1820 134 19 49 chr6 39445726 39445867 -142969375 - AluJb SINE Alu -167 145 1 2379 94 0 0 chr6 39445946 39446243 -142968999 - AluSg SINE Alu -13 297 1 2384 102 0 0 chr6 39446297 39446601 -142968641 - AluSg SINE Alu -6 304 1 996 305 91 14 chr6 39446612 39447242 -142968000 - L1ME3A LINE L1 -203 5967 5290 306 0 0 0 chr6 39447254 39447288 -142967954 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2360 87 10 0 chr6 39447306 39447604 -142967638 - AluSp SINE Alu -12 301 1 924 153 0 0 chr6 39447604 39447735 -142967507 - AluSq/x SINE Alu -177 135 5 2242 82 4 0 chr6 39447744 39448067 -142967175 - AluY SINE Alu 0 326 3 1871 124 84 0 chr6 39448069 39448342 -142966900 - AluSg SINE Alu -14 296 1 1047 177 6 11 chr6 39448342 39448523 -142966719 - AluJo SINE Alu -12 300 121 200 132 26 0 chr6 39448572 39448610 -142966632 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 704 195 0 0 chr6 39450038 39450156 -142965086 - AluJo SINE Alu -188 124 7 286 170 54 116 chr6 39450185 39450332 -142964910 - L1MC5 LINE L1 -58 7903 7766 2442 87 0 3 chr6 39450363 39450662 -142964580 - AluY SINE Alu -13 298 1 353 358 38 7 chr6 39450662 39450950 -142964292 - L1MCa LINE L1 -3289 3137 2841 2020 131 0 4 chr6 39450953 39451228 -142964014 + AluJb SINE Alu 6 279 -33 237 65 0 0 chr6 39451228 39451259 -142963983 + (CAA)n Simple_repeat Simple_repeat 2 32 0 314 219 6 107 chr6 39451264 39451304 -142963938 - L1MCa LINE L1 -3785 2641 2599 2172 128 0 0 chr6 39451304 39451602 -142963640 + AluSx SINE Alu 1 298 -14 314 219 6 107 chr6 39451602 39451730 -142963512 - L1MCa LINE L1 -3827 2599 2490 2316 103 0 3 chr6 39452092 39452394 -142962848 - AluY SINE Alu -8 303 3 217 241 58 58 chr6 39452561 39452648 -142962594 - L2 LINE L2 -3 3269 3183 200 159 0 45 chr6 39452699 39452743 -142962499 + C-rich Low_complexity Low_complexity 5 46 0 1459 148 0 10 chr6 39453185 39453394 -142961848 + AluSx SINE Alu 1 207 -105 2469 91 3 0 chr6 39453396 39453704 -142961538 + AluSg SINE Alu 2 310 0 2594 55 0 0 chr6 39453709 39454016 -142961226 + AluY SINE Alu 1 307 -4 1517 201 3 26 chr6 39454021 39454324 -142960918 + AluJo SINE Alu 1 296 -16 380 200 12 0 chr6 39454335 39454420 -142960822 + L1MEc LINE L1 2262 2347 -4049 1571 61 0 0 chr6 39454423 39454624 -142960618 - AluY SINE Alu 0 302 102 30 27 0 0 chr6 39454624 39454661 -142960581 + AT_rich Low_complexity Low_complexity 1 37 0 337 285 98 15 chr6 39454662 39454811 -142960431 - L1MCa LINE L1 -4295 2131 1989 333 0 0 0 chr6 39454847 39454881 -142960361 + (TG)n Simple_repeat Simple_repeat 1 71 0 333 0 0 0 chr6 39454881 39454918 -142960324 + (TG)n Simple_repeat Simple_repeat 2 38 0 1738 135 0 39 chr6 39455111 39455371 -142959871 - AluSq SINE Alu -63 250 1 2100 139 0 0 chr6 39456187 39456490 -142958752 - AluSx SINE Alu -7 305 3 959 94 0 58 chr6 39456490 39456628 -142958614 - AluSq/x SINE Alu -174 138 9 1344 124 6 0 chr6 39456729 39456907 -142958335 + AluSg/x SINE Alu 87 265 -45 352 178 14 14 chr6 39457020 39457093 -142958149 - AluJo SINE Alu -7 295 223 947 184 39 22 chr6 39457093 39457272 -142957970 - AluJo SINE Alu -128 184 3 219 288 82 0 chr6 39457341 39457414 -142957828 + MER5B DNA MER1_type 81 159 -19 1990 124 21 0 chr6 39457445 39457727 -142957515 + AluSx SINE Alu 1 288 -24 337 113 0 0 chr6 39457943 39458005 -142957237 + Alu SINE Alu 241 302 0 232 261 60 45 chr6 39460175 39460309 -142954933 - L1ME4a LINE L1 -11 6110 5975 22 0 0 0 chr6 39460336 39460358 -142954884 + AT_rich Low_complexity Low_complexity 1 22 0 2326 68 17 10 chr6 39460362 39460656 -142954586 + AluSg SINE Alu 1 296 -14 1451 158 43 50 chr6 39460660 39460938 -142954304 + AluJb SINE Alu 30 305 -7 2199 103 3 13 chr6 39460940 39461242 -142954000 + AluSx SINE Alu 1 299 -13 2369 96 0 19 chr6 39461246 39461559 -142953683 + AluSq SINE Alu 1 307 -6 2377 107 0 3 chr6 39461562 39461870 -142953372 + AluSx SINE Alu 1 307 -5 691 170 82 0 chr6 39461870 39462017 -142953225 + AluJb SINE Alu 134 292 -20 2513 53 0 10 chr6 39462017 39462318 -142952924 + AluY SINE Alu 1 298 -13 2435 81 0 0 chr6 39462318 39462614 -142952628 + AluY SINE Alu 1 296 -15 701 101 0 78 chr6 39462651 39462780 -142952462 + FLAM_A SINE Alu 24 142 0 1036 159 0 6 chr6 39462938 39463108 -142952134 - AluJb SINE Alu -10 302 134 313 264 104 7 chr6 39463108 39463252 -142951990 + L1MEd LINE L1 1056 1213 -4906 1948 130 9 16 chr6 39463253 39463601 -142951641 - MER4A LTR ERV1 0 664 261 2181 138 0 0 chr6 39463603 39463901 -142951341 - AluSx SINE Alu -14 298 1 325 298 57 0 chr6 39464004 39464128 -142951114 + L2 LINE L2 2654 2784 -530 1503 147 108 39 chr6 39464128 39464407 -142950835 - AluSx SINE Alu -12 300 3 225 313 145 33 chr6 39464564 39464778 -142950464 - L2 LINE L2 -954 2360 2123 192 324 81 9 chr6 39464813 39464924 -142950318 + L2 LINE L2 3139 3257 -15 3609 105 0 4 chr6 39464975 39465488 -142949754 - MER9 LTR ERVK 0 511 1 284 330 21 0 chr6 39465907 39466001 -142949241 - L2 LINE L2 -528 2786 2691 1988 142 0 22 chr6 39466001 39466312 -142948930 - AluSq SINE Alu -9 304 1 1818 158 9 53 chr6 39466312 39466634 -142948608 - AluJb SINE Alu -4 308 1 216 0 0 0 chr6 39467209 39467233 -142948009 + (CA)n Simple_repeat Simple_repeat 2 25 0 1937 93 19 30 chr6 39467654 39467923 -142947319 - AluSq SINE Alu -47 266 1 308 24 24 0 chr6 39467926 39467967 -142947275 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2011 120 3 7 chr6 39467971 39468254 -142946988 - AluSx SINE Alu -30 282 1 2295 104 3 10 chr6 39468336 39468643 -142946599 - AluSp SINE Alu -8 305 1 2040 137 10 7 chr6 39468666 39468965 -142946277 - AluSx SINE Alu -8 304 5 244 271 101 47 chr6 39468968 39469097 -142946145 - L1ME3A LINE L1 -60 6110 5975 2130 217 50 32 chr6 39469215 39469533 -142945709 - L1ME1 LINE L1 -5 6161 5825 2353 110 0 0 chr6 39469533 39469842 -142945400 - AluSx SINE Alu -3 309 1 2130 217 50 32 chr6 39469842 39470118 -142945124 - L1ME1 LINE L1 -341 5825 5556 693 169 52 113 chr6 39470121 39470369 -142944873 - MER21A LTR ERV1 -3 928 696 2393 161 108 91 chr6 39470369 39470954 -142944288 - LTR12 LTR ERV1 -2 712 118 1509 188 72 60 chr6 39470957 39471403 -142943839 - pTR5 LTR ERV1 -1245 1193 743 867 126 28 28 chr6 39471403 39471546 -142943696 - MER21A LTR ERV1 -230 701 559 2800 157 47 72 chr6 39471547 39472090 -142943152 + MER4D LTR ERV1 1 525 -378 2203 121 0 0 chr6 39472090 39472388 -142942854 + AluSx SINE Alu 1 298 -14 2800 157 47 72 chr6 39472388 39472511 -142942731 + MER4D LTR ERV1 525 650 -253 2471 144 9 118 chr6 39472512 39473053 -142942189 + LTR12 LTR ERV1 1 482 -232 767 216 82 35 chr6 39473053 39473284 -142941958 + MER4D LTR ERV1 651 892 -11 242 269 0 0 chr6 39473327 39473379 -142941863 + LTR30 LTR ERV1 1 52 -670 1370 105 39 53 chr6 39473379 39473652 -142941590 + LTR12 LTR ERV1 57 2013 -425 23 0 0 0 chr6 39473687 39473710 -142941532 + GC_rich Low_complexity Low_complexity 1 23 0 260 208 31 83 chr6 39473716 39473812 -142941430 + LTR30 LTR ERV1 552 642 -80 668 131 0 0 chr6 39473815 39473914 -142941328 + LTR12 LTR ERV1 615 713 -1 979 143 10 17 chr6 39473914 39474242 -142941000 - MER21A LTR ERV1 -431 432 83 2349 88 3 0 chr6 39474260 39474545 -142940697 - AluSg SINE Alu -24 286 1 357 240 27 103 chr6 39474545 39474626 -142940616 - L1M4 LINE L1 -1861 4285 4218 1975 147 7 0 chr6 39474626 39474940 -142940302 + AluSx SINE Alu 1 312 0 357 240 27 103 chr6 39474940 39475004 -142940238 - L1M4 LINE L1 -1928 4218 4151 6733 69 14 48 chr6 39475005 39475992 -142939250 - SVA Other Other 0 1386 433 27 49 0 0 chr6 39476014 39476055 -142939187 + GC_rich Low_complexity Low_complexity 1 41 0 1873 104 13 74 chr6 39476060 39476522 -142938720 - SVA Other Other -520 866 433 2875 79 25 82 chr6 39476539 39477305 -142937937 - SVA Other Other -518 868 393 21 36 0 0 chr6 39477356 39477384 -142937858 + GC_rich Low_complexity Low_complexity 1 28 0 398 315 9 0 chr6 39477458 39477569 -142937673 + MLT1K LTR MaLR 69 180 -408 1500 286 81 14 chr6 39477570 39477988 -142937254 - L1M4 LINE L1 -1975 4171 3714 225 0 0 0 chr6 39477988 39478013 -142937229 + (TG)n Simple_repeat Simple_repeat 2 26 0 1500 286 81 14 chr6 39478013 39478222 -142937020 - L1M4 LINE L1 -2432 3714 3520 718 152 53 0 chr6 39478222 39478354 -142936888 - L1MC3 LINE L1 0 7785 3458 1028 172 18 0 chr6 39478357 39478547 -142936695 - AluJ SINE Alu 0 312 120 1125 216 138 17 chr6 39478550 39478660 -142936582 - L1MC3 LINE L1 -2924 3222 3127 1910 163 13 16 chr6 39478660 39478973 -142936269 - AluJb SINE Alu 0 312 1 1125 216 138 17 chr6 39478973 39479072 -142936170 - L1MC3 LINE L1 -3019 3127 3041 804 148 0 15 chr6 39479072 39479207 -142936035 - AluJ SINE Alu -169 133 1 1125 216 138 17 chr6 39479207 39479458 -142935784 - L1MC3 LINE L1 -3105 3041 2705 2439 94 0 0 chr6 39479467 39479774 -142935468 - AluSx SINE Alu -5 307 1 1825 148 0 70 chr6 39479940 39480271 -142934971 + AluJb SINE Alu 1 308 -4 485 152 87 51 chr6 39480621 39480759 -142934483 + FLAM_C SINE Alu 1 143 0 252 221 0 0 chr6 39481703 39481780 -142933462 + (CGG)n Simple_repeat Simple_repeat 1 77 0 646 143 109 0 chr6 39483671 39483790 -142931452 + FLAM_C SINE Alu 1 132 -1 1104 173 154 30 chr6 39484015 39484137 -142931105 - AluSg1 SINE Alu -10 299 194 1267 155 51 127 chr6 39484137 39484341 -142930901 - AluSx SINE Alu 0 312 94 2364 95 0 3 chr6 39484341 39484647 -142930595 - AluY SINE Alu -6 305 1 207 0 0 0 chr6 39484647 39484670 -142930572 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1267 155 51 127 chr6 39484670 39484816 -142930426 - AluSx SINE Alu -216 96 3 1104 173 154 30 chr6 39484816 39484846 -142930396 - AluSg1 SINE Alu -115 194 169 1552 127 68 93 chr6 39484846 39485231 -142930011 - THE1C LTR MaLR 0 375 1 1104 173 154 30 chr6 39485231 39485343 -142929899 - AluSg1 SINE Alu -140 169 1 305 256 0 33 chr6 39485659 39485749 -142929493 + L3 LINE CR1 1490 1576 -1 3344 110 85 2 chr6 39486041 39486616 -142928626 - Tigger3b DNA MER2_type 0 1231 609 842 168 0 28 chr6 39486632 39486775 -142928467 - FLAM_A SINE Alu -3 139 1 2620 118 102 82 chr6 39486776 39487201 -142928041 - Tigger3b DNA MER2_type -2397 631 189 1853 163 20 3 chr6 39487201 39487496 -142927746 - AluJb SINE Alu -12 300 1 2620 118 102 82 chr6 39487496 39487688 -142927554 - Tigger3b DNA MER2_type -2839 189 2 243 280 203 25 chr6 39487816 39487934 -142927308 - L2 LINE L2 -10 3262 3124 2010 142 3 3 chr6 39488351 39488646 -142926596 + AluSx SINE Alu 7 301 -11 1202 190 23 5 chr6 39488938 39489154 -142926088 - AluJo SINE Alu -92 220 1 24 77 0 0 chr6 39489191 39489243 -142925999 + AT_rich Low_complexity Low_complexity 1 52 0 1869 176 10 0 chr6 39489283 39489579 -142925663 - AluJb SINE Alu -13 299 1 623 203 0 30 chr6 39490805 39490938 -142924304 + AluJb SINE Alu 165 293 -19 2399 100 0 3 chr6 39491172 39491483 -142923759 - AluSg SINE Alu 0 310 1 1710 129 13 93 chr6 39491483 39491794 -142923448 - AluJo SINE Alu -15 297 12 1790 163 3 23 chr6 39491908 39492214 -142923028 - AluJb SINE Alu -12 300 1 2392 94 0 0 chr6 39492229 39492536 -142922706 - AluSg SINE Alu -3 307 1 1703 192 3 3 chr6 39493012 39493304 -142921938 + AluJb SINE Alu 1 292 -20 1002 182 0 12 chr6 39493809 39493974 -142921268 + FRAM SINE Alu 1 160 -16 1755 94 126 12 chr6 39493977 39494258 -142920984 + AluSg SINE Alu 1 310 0 1927 138 39 0 chr6 39494313 39494596 -142920646 - AluSx SINE Alu -18 294 1 807 150 0 0 chr6 39494623 39494743 -142920499 + FLAM_C SINE Alu 6 125 -18 2219 111 0 0 chr6 39494758 39495047 -142920195 - AluSx SINE Alu -19 293 5 370 250 66 52 chr6 39495740 39495876 -142919366 + LTR67 LTR ERVL 420 557 0 1466 205 30 17 chr6 39496007 39496304 -142918938 - AluJo SINE Alu -11 301 1 2162 125 3 0 chr6 39496480 39496777 -142918465 - AluSx SINE Alu -14 298 1 1599 137 44 0 chr6 39497752 39498001 -142917241 + AluJo SINE Alu 1 260 -52 493 113 0 0 chr6 39498013 39498084 -142917158 + AluJ/FRAM SINE Alu 232 302 -10 2268 97 13 10 chr6 39498954 39499264 -142915978 - AluSx SINE Alu -1 311 1 309 233 81 0 chr6 39499456 39499542 -142915700 + MIR SINE MIR 120 212 -50 2433 90 0 10 chr6 39500146 39500457 -142914785 - AluSx SINE Alu -4 308 1 2430 81 0 0 chr6 39501035 39501330 -142913912 - AluY SINE Alu -15 296 2 2084 135 3 0 chr6 39501517 39501805 -142913437 - AluSp SINE Alu -23 290 2 6150 52 3 0 chr6 39501835 39502578 -142912664 + L1PA5 LINE L1 5405 6149 -5 2203 105 10 0 chr6 39502846 39503140 -142912102 - AluSc SINE Alu -12 297 1 2377 85 0 23 chr6 39503200 39503507 -142911735 - AluSx SINE Alu -12 300 1 343 305 120 15 chr6 39503907 39504107 -142911135 + MLT1J LTR MaLR 253 473 -38 292 338 65 0 chr6 39504733 39504887 -142910355 + L2 LINE L2 3112 3275 -38 2400 88 0 0 chr6 39505391 39505696 -142909546 + AluY SINE Alu 1 305 -6 2362 89 0 0 chr6 39506116 39506408 -142908834 - AluSg SINE Alu -18 292 1 2256 104 0 10 chr6 39506822 39507129 -142908113 - AluSx SINE Alu -8 304 1 1960 129 39 0 chr6 39507145 39507424 -142907818 + AluSx SINE Alu 1 290 -22 1035 149 0 11 chr6 39507426 39507607 -142907635 - L1MB3 LINE L1 0 6183 6005 972 146 19 13 chr6 39507607 39507765 -142907477 + FRAM SINE Alu 1 158 -18 518 174 9 0 chr6 39507810 39507919 -142907323 + CT-rich Low_complexity Low_complexity 1 110 0 1709 177 0 30 chr6 39507926 39508231 -142907011 - AluJo SINE Alu -3 309 14 34 0 0 0 chr6 39508248 39508282 -142906960 + AT_rich Low_complexity Low_complexity 1 34 0 2136 105 7 0 chr6 39508282 39508568 -142906674 - AluSx SINE Alu -24 288 1 647 221 0 0 chr6 39508572 39508694 -142906548 - FLAM_A SINE Alu -8 125 4 1071 133 23 0 chr6 39508694 39508867 -142906375 - L1MB3 LINE L1 -212 5971 5795 2175 103 7 0 chr6 39508871 39509181 -142906061 - AluSx SINE Alu 0 312 1 2173 85 43 0 chr6 39509274 39509577 -142905665 - AluY SINE Alu 0 311 1 189 0 0 0 chr6 39509796 39509817 -142905425 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1646 86 9 0 chr6 39510355 39510565 -142904677 + AluSg/x SINE Alu 98 309 -1 226 253 20 61 chr6 39511454 39511553 -142903689 + MIR SINE MIR 104 198 -64 1440 109 47 0 chr6 39511573 39511766 -142903476 + AluSq SINE Alu 1 202 -111 24 0 0 0 chr6 39511825 39511849 -142903393 + AT_rich Low_complexity Low_complexity 1 24 0 387 137 13 6 chr6 39511865 39512100 -142903142 + AluJo SINE Alu 13 281 -21 5713 139 58 33 chr6 39512162 39513100 -142902142 - L1MC1 LINE L1 -5 6328 5360 1730 181 10 7 chr6 39513100 39513388 -142901854 - AluJo SINE Alu -23 289 1 5713 139 58 33 chr6 39513388 39513570 -142901672 - L1MC1 LINE L1 -973 5360 5184 2090 97 40 30 chr6 39513738 39514036 -142901206 - AluSx SINE Alu -10 302 2 189 0 0 0 chr6 39514037 39514058 -142901184 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 1556 147 3 46 chr6 39514058 39514343 -142900899 - AluJb SINE Alu 0 312 40 2720 172 73 21 chr6 39514370 39514929 -142900313 + L1MB5 LINE L1 5443 6030 -144 2282 94 7 3 chr6 39514929 39515237 -142900005 - AluY SINE Alu -2 309 1 306 0 0 0 chr6 39516036 39516070 -142899172 + (TG)n Simple_repeat Simple_repeat 2 35 0 356 271 133 14 chr6 39516489 39516687 -142898555 + L1M4 LINE L1 4470 4696 -1450 1603 160 20 49 chr6 39516687 39516993 -142898249 - AluJb SINE Alu -15 297 1 356 271 133 14 chr6 39516993 39517004 -142898238 + L1M4 LINE L1 4696 4704 -1442 749 238 14 59 chr6 39517005 39517252 -142897990 - L1MC5 LINE L1 -37 7924 7690 2533 57 7 0 chr6 39517252 39517549 -142897693 + AluY SINE Alu 1 299 -12 749 238 14 59 chr6 39517549 39517587 -142897655 - L1MC5 LINE L1 -271 7690 7652 * 1021 180 34 114 chr6 39517582 39517932 -142897310 - L1MC5 LINE L1 -890 7071 6750 485 181 63 0 chr6 39518054 39518181 -142897061 - L1MA4 LINE L1 -1 6299 6165 1175 144 77 0 chr6 39518341 39518522 -142896720 - MER21B LTR ERV1 -368 495 301 2864 212 57 76 chr6 39518524 39519587 -142895655 + L1M4 LINE L1 3400 4442 -1704 2196 110 0 0 chr6 39519606 39519888 -142895354 - AluSx SINE Alu -30 282 1 357 24 0 0 chr6 39519892 39519934 -142895308 + (TG)n Simple_repeat Simple_repeat 2 43 0 450 160 27 0 chr6 39519943 39520018 -142895224 - FAM SINE Alu -37 148 72 1839 138 20 40 chr6 39520018 39520111 -142895131 + AluJb SINE Alu 1 94 -218 2184 76 36 50 chr6 39520111 39520414 -142894828 + AluSq SINE Alu 1 299 -14 1839 138 20 40 chr6 39520414 39520624 -142894618 + AluJb SINE Alu 94 298 -14 1680 113 13 9 chr6 39520628 39520857 -142894385 + AluSx SINE Alu 1 230 -82 391 219 50 25 chr6 39520909 39521028 -142894214 + L1MC5 LINE L1 7807 7928 -33 379 263 81 12 chr6 39521042 39521202 -142894040 + L1MC4a LINE L1 5797 5967 -1841 278 349 92 7 chr6 39521396 39521548 -142893694 - MIR3 SINE MIR -6 202 38 1703 175 0 17 chr6 39521861 39522152 -142893090 + AluJb SINE Alu 3 288 -24 589 139 209 0 chr6 39522273 39522388 -142892854 - FLAM_C SINE Alu 0 143 5 2403 94 3 0 chr6 39522562 39522869 -142892373 - AluSq SINE Alu -5 308 1 1144 179 153 0 chr6 39522875 39523104 -142892138 - AluJo SINE Alu -16 296 33 862 103 0 89 chr6 39523115 39523261 -142891981 - FLAM_C SINE Alu 0 133 1 327 152 0 0 chr6 39523303 39523349 -142891893 - AluJo SINE Alu -252 47 2 29 47 0 0 chr6 39523619 39523662 -142891580 + AT_rich Low_complexity Low_complexity 1 43 0 2576 59 3 0 chr6 39524213 39524520 -142890722 - AluY SINE Alu -3 308 1 191 321 95 15 chr6 39524965 39525102 -142890140 + L2 LINE L2 2482 2629 -685 632 153 0 42 chr6 39525165 39525283 -142889959 + AluJ SINE Alu 38 150 -162 37 0 0 0 chr6 39525283 39525320 -142889922 + AT_rich Low_complexity Low_complexity 1 37 0 1009 145 0 0 chr6 39525324 39525469 -142889773 + AluJ SINE Alu 156 300 -12 2538 65 3 0 chr6 39525525 39525833 -142889409 - AluY SINE Alu -2 309 1 1466 135 9 135 chr6 39525835 39526030 -142889212 - AluJb SINE Alu -8 294 76 1508 163 82 35 chr6 39526030 39526312 -142888930 - AluSq SINE Alu -18 295 1 1466 135 9 135 chr6 39526312 39526324 -142888918 - AluJb SINE Alu -226 76 64 246 32 0 0 chr6 39526324 39526355 -142888887 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1466 135 9 135 chr6 39526355 39526480 -142888762 - AluJb SINE Alu -238 64 3 1773 157 0 42 chr6 39527264 39527576 -142887666 + AluJo SINE Alu 5 303 -9 2356 71 0 0 chr6 39528260 39528567 -142886675 + AluSp SINE Alu 1 307 0 2394 80 0 0 chr6 39528648 39528947 -142886295 - AluY SINE Alu -12 299 1 2178 102 7 3 chr6 39528981 39529290 -142885952 + AluSq SINE Alu 1 310 0 4434 164 70 24 chr6 39529317 39529378 -142885864 - L1MB5 LINE L1 0 6174 6117 2369 88 0 0 chr6 39529378 39529673 -142885569 + AluY SINE Alu 1 295 -16 4434 164 70 24 chr6 39529673 39530761 -142884481 - L1MB5 LINE L1 -57 6117 4962 1768 150 45 17 chr6 39530774 39531061 -142884181 - AluJo SINE Alu -17 295 1 225 0 0 0 chr6 39532014 39532039 -142883203 + (T)n Simple_repeat Simple_repeat 1 25 0 194 250 42 86 chr6 39533766 39533887 -142881355 + MIR SINE MIR 6 136 -72 725 270 203 22 chr6 39534048 39534403 -142880839 - MLT1L LTR MaLR -74 541 123 772 188 7 36 chr6 39534577 39534715 -142880527 - MER58A DNA MER1_type -54 170 37 519 208 0 0 chr6 39534745 39534846 -142880396 + MER5A DNA MER1_type 9 109 -80 523 223 89 19 chr6 39535312 39535469 -142879773 + LTR67 LTR ERVL 383 550 -7 187 390 0 0 chr6 39535740 39535817 -142879425 - L2 LINE L2 0 3313 3237 1410 205 55 3 chr6 39537639 39537985 -142877257 + L1 LINE L1 5031 5394 -752 1844 94 70 0 chr6 39538049 39538320 -142876922 - AluSx SINE Alu 0 310 23 445 133 33 0 chr6 39538335 39538425 -142876817 + L1MA5 LINE L1 6206 6298 -2 829 144 8 0 chr6 39538442 39538574 -142876668 + FLAM_A SINE Alu 1 133 0 30 0 0 0 chr6 39538886 39538916 -142876326 + AT_rich Low_complexity Low_complexity 1 30 0 305 100 20 0 chr6 39539328 39539378 -142875864 + (TC)n Simple_repeat Simple_repeat 1 51 0 1307 181 105 11 chr6 39539394 39539670 -142875572 - AluJo SINE Alu 0 302 1 2131 104 24 7 chr6 39539674 39539972 -142875270 - AluSx SINE Alu -9 303 1 269 203 110 76 chr6 39540671 39540789 -142874453 - MIR SINE MIR -94 168 47 226 191 0 0 chr6 39540826 39540868 -142874374 + L1ME4a LINE L1 5974 6015 -106 1016 179 0 12 chr6 39541577 39541744 -142873498 + MER2 DNA MER2_type 24 188 -157 467 129 0 14 chr6 39541744 39541814 -142873428 + Tigger2 DNA MER2_type 1 69 -2649 * 2251 114 43 48 chr6 39541797 39542190 -142873052 + Tigger2 DNA MER2_type 2267 2657 -61 1304 148 8 66 chr6 39542205 39542448 -142872794 + AluJo SINE Alu 63 291 -21 288 150 133 33 chr6 39542449 39542509 -142872733 + Tigger2 DNA MER2_type 2651 2716 -2 684 177 106 7 chr6 39542527 39542668 -142872574 + MER2 DNA MER2_type 191 345 0 2197 126 0 0 chr6 39543174 39543467 -142871775 + AluSx SINE Alu 1 293 -19 1936 171 0 13 chr6 39543498 39543813 -142871429 - AluJb SINE Alu 0 312 2 6822 53 2 0 chr6 39543884 39544673 -142870569 + L1PA5 LINE L1 5360 6150 -4 2387 82 0 0 chr6 39544748 39545040 -142870202 + AluSq SINE Alu 1 292 -21 267 203 0 0 chr6 39545056 39545130 -142870112 + (TA)n Simple_repeat Simple_repeat 1 74 0 852 172 35 0 chr6 39545653 39545798 -142869444 + FRAM SINE Alu 10 159 -17 364 104 75 0 chr6 39545833 39545900 -142869342 + L1ME4a LINE L1 6049 6120 -1 527 176 0 20 chr6 39545967 39546069 -142869173 + L1MA9 LINE L1 6208 6307 -5 355 141 26 250 chr6 39546076 39546158 -142869084 - Charlie8 DNA MER1_type -2236 181 82 4350 164 48 77 chr6 39546158 39546776 -142868466 + LTR13 LTR ERVK 1 581 -373 2453 73 7 3 chr6 39546776 39547078 -142868164 - AluSc SINE Alu -6 303 1 4350 164 48 77 chr6 39547078 39547442 -142867800 + LTR13 LTR ERVK 581 954 0 2246 98 0 0 chr6 39547444 39547730 -142867512 + AluSx SINE Alu 17 302 -10 355 141 26 250 chr6 39547730 39547800 -142867442 - Charlie8 DNA MER1_type -2336 81 61 1610 155 84 18 chr6 39548820 39549104 -142866138 + AluJo SINE Alu 3 305 -7 800 188 20 7 chr6 39549760 39549909 -142865333 + FRAM SINE Alu 1 151 -25 2051 125 7 7 chr6 39549959 39550256 -142864986 - AluSx SINE Alu -15 297 1 344 257 74 35 chr6 39550481 39550683 -142864559 - L1MC4 LINE L1 -9 8033 7824 233 109 22 0 chr6 39550686 39550732 -142864510 + CT-rich Low_complexity Low_complexity 2 48 0 1800 175 20 0 chr6 39550735 39551038 -142864204 - AluJb SINE Alu -3 309 1 2732 133 54 9 chr6 39551075 39551518 -142863724 - L1PA16 LINE L1 -1 6165 5703 460 251 38 93 chr6 39551546 39551800 -142863442 - L1MC5 LINE L1 -271 7690 7461 2450 68 3 0 chr6 39551800 39552094 -142863148 + AluY SINE Alu 1 295 -16 460 251 38 93 chr6 39552094 39552206 -142863036 - L1MC5 LINE L1 -500 7461 7344 439 209 0 33 chr6 39552212 39552303 -142862939 + MER3 DNA MER1_type 1 88 -121 292 213 0 0 chr6 39552322 39552369 -142862873 + MER66A LTR ERV1 292 338 -140 623 195 8 0 chr6 39552388 39552506 -142862736 - MER3 DNA MER1_type -50 159 41 226 247 55 0 chr6 39552510 39552583 -142862659 - L1MC4 LINE L1 -547 7495 7419 2094 109 3 3 chr6 39552857 39553173 -142862069 - AluSx SINE Alu 0 316 1 1879 148 14 10 chr6 39553480 39553777 -142861465 - AluJb SINE Alu -14 298 1 2119 121 10 3 chr6 39553807 39554113 -142861129 + AluSg SINE Alu 1 308 -2 4480 153 56 65 chr6 39554308 39555242 -142860000 + MER21A LTR ERV1 1 925 -6 564 253 40 87 chr6 39555399 39555466 -142859776 + L1MC4a LINE L1 5622 5691 -471 938 130 0 30 chr6 39555466 39555597 -142859645 + FLAM_C SINE Alu 1 127 -6 564 253 40 87 chr6 39555597 39555990 -142859252 + L1MC4a LINE L1 5691 5766 -396 28 0 0 0 chr6 39556334 39556362 -142858880 + AT_rich Low_complexity Low_complexity 1 28 0 413 224 224 0 chr6 39556607 39556750 -142858492 - MLT1G LTR MaLR -6 584 410 2318 235 149 39 chr6 39556780 39557657 -142857585 + L2 LINE L2 1995 2968 -346 761 180 29 7 chr6 39558166 39558305 -142856937 + AluJo SINE Alu 2 143 -169 197 164 55 73 chr6 39558587 39558642 -142856600 - L3b LINE CR1 -8 1575 1522 303 200 0 0 chr6 39558811 39558866 -142856376 + L1MC/D LINE L1 5434 5488 -871 242 375 42 10 chr6 39559360 39559456 -142855786 + MIR SINE MIR 38 136 -72 2000 138 0 20 chr6 39559753 39560058 -142855184 - AluSx SINE Alu -13 299 1 970 131 0 0 chr6 39560058 39560188 -142855054 - AluSq/x SINE Alu -182 130 1 2416 78 3 0 chr6 39560218 39560513 -142854729 - AluSp SINE Alu -17 296 1 1187 59 0 0 chr6 39560513 39560648 -142854594 - AluY SINE Alu -176 135 1 3511 138 17 44 chr6 39560655 39561125 -142854117 - L1MC1 LINE L1 -13 6600 6150 1997 144 0 25 chr6 39561125 39561444 -142853798 - AluSx SINE Alu -1 311 1 3511 138 17 44 chr6 39561444 39561611 -142853631 - L1MC1 LINE L1 -463 6150 5980 466 128 81 0 chr6 39561611 39561697 -142853545 + L1M4 LINE L1 4754 4846 -1300 * 1237 169 67 24 chr6 39561686 39561911 -142853331 - L1MC1 LINE L1 -505 5946 5754 2247 107 3 3 chr6 39561911 39562210 -142853032 - AluSx SINE Alu -13 299 1 1237 169 67 24 chr6 39562210 39562234 -142853008 - L1MC1 LINE L1 -697 5754 5732 * 7629 213 100 68 chr6 39562232 39563764 -142851478 - L1MC1 LINE L1 -983 5443 3961 189 0 0 0 chr6 39563764 39563785 -142851457 + (TGG)n Simple_repeat Simple_repeat 1 21 0 7629 213 100 68 chr6 39563785 39563797 -142851445 - L1MC1 LINE L1 -2465 3961 3951 2108 116 3 0 chr6 39563797 39564081 -142851161 - AluSx SINE Alu -27 285 1 1645 188 3 3 chr6 39564081 39564378 -142850864 - AluJo SINE Alu -14 298 1 7629 213 100 68 chr6 39564378 39565097 -142850145 - L1MC1 LINE L1 -2475 3951 3256 957 150 0 0 chr6 39565097 39565230 -142850012 - FLAM_C SINE Alu 0 133 1 7629 213 100 68 chr6 39565230 39565850 -142849392 - L1MC1 LINE L1 -3170 3256 2462 1710 171 3 20 chr6 39565850 39566155 -142849087 - AluJb SINE Alu -12 300 1 2273 115 3 6 chr6 39566179 39566492 -142848750 - AluSx SINE Alu 0 312 1 927 111 100 6 chr6 39566492 39566672 -142848570 - L1MC1 LINE L1 -3962 2464 2268 1839 140 11 0 chr6 39566747 39567032 -142848210 - AluJo SINE Alu -24 288 1 21 57 0 0 chr6 39567037 39567072 -142848170 + AT_rich Low_complexity Low_complexity 1 35 0 738 198 8 0 chr6 39567072 39567198 -142848044 - FLAM_A SINE Alu -3 130 4 921 278 91 60 chr6 39568065 39569003 -142846239 + L1ME3A LINE L1 2429 3395 -2751 2221 117 3 7 chr6 39569045 39569353 -142845889 + AluSx SINE Alu 1 307 -5 1909 142 3 40 chr6 39569357 39569681 -142845561 + AluJb SINE Alu 1 312 0 188 32 97 0 chr6 39569882 39569913 -142845329 + CT-rich Low_complexity Low_complexity 1 34 0 834 177 15 0 chr6 39569913 39570043 -142845199 - FLAM_C SINE Alu 0 133 2 2104 128 10 3 chr6 39570053 39570358 -142844884 - AluSq SINE Alu -6 307 1 1218 208 14 0 chr6 39570363 39570575 -142844667 - MER58A DNA MER1_type -9 215 1 832 259 68 46 chr6 39570643 39571057 -142844185 + L1ME3A LINE L1 3912 4334 -1812 840 182 6 94 chr6 39571063 39571244 -142843998 + AluJb SINE Alu 83 247 -65 2279 90 7 10 chr6 39571568 39571878 -142843364 - AluSx SINE Alu -3 309 1 230 229 64 28 chr6 39571909 39572018 -142843224 + L1ME3A LINE L1 5119 5231 -915 1499 151 9 0 chr6 39572040 39572265 -142842977 + AluJb SINE Alu 42 268 -44 207 0 0 0 chr6 39572275 39572298 -142842944 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1797 225 127 26 chr6 39572554 39573051 -142842191 - MLT1H LTR MaLR 0 549 3 369 302 0 0 chr6 39573181 39573310 -142841932 + L1ME3A LINE L1 5755 5883 -287 1742 101 21 116 chr6 39574281 39574414 -142840828 + AluJo SINE Alu 1 145 -157 2038 125 17 0 chr6 39574414 39574703 -142840539 - AluSx SINE Alu -16 296 3 1742 101 21 116 chr6 39574703 39574896 -142840346 + AluJo SINE Alu 145 296 -6 732 161 40 16 chr6 39575584 39575708 -142839534 + FLAM_A SINE Alu 1 127 -6 1863 148 14 7 chr6 39575952 39576249 -142838993 - AluJb SINE Alu -13 299 1 1908 89 35 98 chr6 39576434 39576569 -142838673 + AluSg SINE Alu 1 143 -167 261 0 0 0 chr6 39576569 39576598 -142838644 + (TA)n Simple_repeat Simple_repeat 1 29 0 1908 89 35 98 chr6 39576598 39576778 -142838464 + AluSg SINE Alu 143 296 -14 2332 81 7 3 chr6 39577097 39577393 -142837849 + AluY SINE Alu 1 297 -14 256 346 0 30 chr6 39577599 39577700 -142837542 + L2 LINE L2 3216 3313 0 309 51 0 0 chr6 39577713 39577752 -142837490 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2074 121 0 0 chr6 39577757 39578037 -142837205 - AluJb SINE Alu -32 280 1 1449 191 11 15 chr6 39578047 39578309 -142836933 - AluJo SINE Alu -17 295 35 1856 149 16 13 chr6 39578779 39579088 -142836154 - AluJo SINE Alu -2 310 1 23 0 0 0 chr6 39579192 39579215 -142836027 + AT_rich Low_complexity Low_complexity 1 23 0 809 196 0 15 chr6 39579403 39579536 -142835706 + FLAM_C SINE Alu 2 132 -11 2235 109 3 0 chr6 39579589 39579883 -142835359 - AluSx SINE Alu -16 296 2 21 0 0 0 chr6 39579883 39579904 -142835338 + AT_rich Low_complexity Low_complexity 1 21 0 1074 96 0 7 chr6 39579907 39580043 -142835199 + AluJb SINE Alu 1 135 -177 1645 192 11 3 chr6 39580043 39580329 -142834913 + AluJb SINE Alu 1 288 -24 200 255 0 0 chr6 39580346 39580397 -142834845 + G-rich Low_complexity Low_complexity 6 56 0 1688 199 3 0 chr6 39580969 39581265 -142833977 + AluJo SINE Alu 3 299 -13 189 313 70 17 chr6 39581485 39581600 -142833642 - L2 LINE L2 -12 3301 3181 47 67 0 0 chr6 39581670 39581759 -142833483 + AT_rich Low_complexity Low_complexity 1 89 0 335 256 72 63 chr6 39582286 39582509 -142832733 + L1ME LINE L1 5604 5828 -293 2128 110 11 0 chr6 39582534 39582816 -142832426 + AluSx SINE Alu 9 293 -19 265 314 88 42 chr6 39582830 39583069 -142832173 + L1ME LINE L1 5479 5728 -393 2186 115 3 0 chr6 39583072 39583367 -142831875 + AluSx SINE Alu 3 298 -14 989 154 0 0 chr6 39583367 39583537 -142831705 + AluSg/x SINE Alu 132 301 0 257 195 26 91 chr6 39583549 39583626 -142831616 + L1ME LINE L1 5745 5816 -305 749 159 19 0 chr6 39583640 39583747 -142831495 - AluJb SINE Alu -31 281 173 1246 229 78 14 chr6 39583807 39584091 -142831151 + AluJb SINE Alu 1 302 0 465 254 144 35 chr6 39584173 39584374 -142830868 - MIR SINE MIR -35 227 5 1943 141 3 0 chr6 39584761 39585044 -142830198 - AluJb SINE Alu -28 284 1 27 0 0 0 chr6 39585935 39585962 -142829280 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr6 39586361 39586388 -142828854 + AT_rich Low_complexity Low_complexity 1 27 0 2214 94 42 0 chr6 39587252 39587539 -142827703 + AluSq SINE Alu 3 301 -12 2127 145 3 0 chr6 39587948 39588252 -142826990 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr6 39589774 39589796 -142825446 + AT_rich Low_complexity Low_complexity 1 22 0 2498 79 0 0 chr6 39590826 39591131 -142824111 + AluSg SINE Alu 1 305 -5 237 263 211 0 chr6 39596859 39596973 -142818269 + MIR SINE MIR 59 196 -66 193 291 106 34 chr6 39597211 39597390 -142817852 - L2 LINE L2 -402 2912 2721 245 289 35 95 chr6 39597557 39597872 -142817370 + L1M4 LINE L1 4630 4925 -1221 537 170 9 0 chr6 39597882 39597988 -142817254 + FRAM SINE Alu 56 162 -14 2090 108 31 14 chr6 39597990 39598278 -142816964 + AluSx SINE Alu 8 300 -12 183 80 0 0 chr6 39598438 39598463 -142816779 + (A)n Simple_repeat Simple_repeat 1 25 0 320 240 73 0 chr6 39598886 39598982 -142816260 - MIR3 SINE MIR -8 200 98 2180 123 0 7 chr6 39599097 39599389 -142815853 + AluSx SINE Alu 1 290 -22 2095 84 0 18 chr6 39599549 39599823 -142815419 - AluSc SINE Alu -13 296 28 279 242 20 30 chr6 39599912 39600011 -142815231 + L2 LINE L2 1859 1956 -1358 197 409 27 23 chr6 39600061 39600281 -142814961 + L2 LINE L2 2751 2971 -343 2778 39 0 3 chr6 39601122 39601434 -142813808 + AluY SINE Alu 1 311 0 28 22 0 22 chr6 39602228 39602246 -142812996 + AT_rich Low_complexity Low_complexity 1 18 -27 1928 159 3 0 chr6 39602246 39602536 -142812706 + AluJo SINE Alu 1 291 -21 28 22 0 22 chr6 39602536 39602563 -142812679 + AT_rich Low_complexity Low_complexity 18 45 0 481 177 0 15 chr6 39602570 39602667 -142812575 + AluJ/FLAM SINE Alu 1 69 -233 745 236 5 31 chr6 39602667 39602858 -142812384 - AluJo SINE Alu -126 186 1 1132 148 11 5 chr6 39602868 39603048 -142812194 - AluSq SINE Alu -3 310 127 252 0 0 0 chr6 39603048 39603076 -142812166 + (TG)n Simple_repeat Simple_repeat 1 28 0 1491 70 0 0 chr6 39603446 39603631 -142811611 + AluY SINE Alu 127 311 0 1994 147 7 3 chr6 39603720 39604013 -142811229 - AluJb SINE Alu -18 294 1 2490 85 0 0 chr6 39604094 39604400 -142810842 - AluY SINE Alu -5 306 1 1255 140 55 0 chr6 39604402 39604566 -142810676 - AluSg/x SINE Alu -17 295 117 261 0 0 0 chr6 39604566 39604595 -142810647 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1255 140 55 0 chr6 39604595 39604630 -142810612 - AluSg/x SINE Alu -195 117 85 346 88 0 19 chr6 39604630 39604767 -142810475 - AluY SINE Alu -52 249 59 1354 129 0 10 chr6 39604769 39604962 -142810280 - AluSx SINE Alu -121 191 1 1016 276 40 40 chr6 39605023 39605422 -142809820 - L1ME3A LINE L1 -233 5937 5539 312 326 0 31 chr6 39605439 39605537 -142809705 - L1MEd LINE L1 -4674 1457 1363 25 0 0 0 chr6 39605547 39605572 -142809670 + AT_rich Low_complexity Low_complexity 1 25 0 2008 143 3 27 chr6 39605572 39605873 -142809369 - AluSg SINE Alu -16 294 1 2459 90 0 19 chr6 39606053 39606226 -142809016 - AluSx SINE Alu -6 306 140 243 0 0 0 chr6 39606236 39606263 -142808979 + (TA)n Simple_repeat Simple_repeat 2 28 0 2520 56 0 13 chr6 39606263 39606558 -142808684 - AluSx SINE Alu -19 293 1 2459 90 0 19 chr6 39606558 39606696 -142808546 - AluSx SINE Alu -172 140 1 597 314 89 34 chr6 39606698 39607291 -142807951 - L1MEd LINE L1 -4936 1183 558 419 234 88 39 chr6 39607574 39607779 -142807463 + MLT1K LTR MaLR 215 429 -159 189 0 0 0 chr6 39607942 39607963 -142807279 + (TCTA)n Simple_repeat Simple_repeat 4 24 0 2004 156 3 0 chr6 39607964 39608252 -142806990 - AluJb SINE Alu -23 289 1 2016 136 31 0 chr6 39608687 39608974 -142806268 - AluSx SINE Alu -16 296 1 2506 53 0 17 chr6 39608985 39609284 -142805958 - AluY SINE Alu -16 295 2 2358 98 3 0 chr6 39609294 39609591 -142805651 - AluSx SINE Alu -14 298 1 2107 137 0 0 chr6 39609602 39609930 -142805312 - AluSx SINE Alu 0 328 1 893 158 23 0 chr6 39609939 39610072 -142805170 - AluJo SINE Alu -176 136 1 363 182 34 34 chr6 39610146 39610234 -142805008 + MIR SINE MIR 98 185 -77 418 214 24 0 chr6 39610532 39610616 -142804626 + MIR SINE MIR 79 164 -98 1713 118 0 0 chr6 39610650 39610871 -142804371 - AluSq SINE Alu -91 222 2 265 122 0 0 chr6 39610872 39610913 -142804329 + MIR SINE MIR 153 193 -69 3707 166 171 16 chr6 39610914 39612307 -142802935 + MER52A LTR ERV1 1 1755 0 2226 119 0 3 chr6 39612366 39612661 -142802581 - AluSx SINE Alu -15 297 4 2148 78 0 106 chr6 39614446 39614777 -142800465 - AluSg SINE Alu -4 306 11 535 258 46 7 chr6 39614795 39614946 -142800296 + MIR SINE MIR 106 262 0 18854 124 36 34 chr6 39615018 39616277 -142798965 + L1M1 LINE L1 12 1267 -6298 3346 84 30 14 chr6 39616277 39616779 -142798463 - MER75 DNA T2_type 0 514 5 18854 124 36 34 chr6 39616779 39617236 -142798006 + L1M1 LINE L1 1267 1721 -5844 429 20 0 0 chr6 39617236 39617286 -142797956 + (GGGAGA)n Simple_repeat Simple_repeat 5 54 0 18854 124 36 34 chr6 39617286 39617908 -142797334 + L1M1 LINE L1 1721 2340 -5225 2308 96 7 0 chr6 39617908 39618201 -142797041 - AluSp SINE Alu -18 295 1 18854 124 36 34 chr6 39618201 39618234 -142797008 + L1M1 LINE L1 2340 2371 -5194 2237 124 3 0 chr6 39618234 39618541 -142796701 + AluSx SINE Alu 1 308 -4 18854 124 36 34 chr6 39618541 39619353 -142795889 + L1M1 LINE L1 2371 3205 -4360 510 196 0 0 chr6 39619359 39619466 -142795776 + CT-rich Low_complexity Low_complexity 3 109 0 1838 188 0 6 chr6 39619468 39619782 -142795460 - AluSx SINE Alu 0 312 1 326 322 78 16 chr6 39619795 39619843 -142795399 - L1ME LINE L1 -343 5778 5734 303 28 0 0 chr6 39619843 39619879 -142795363 + (TTA)n Simple_repeat Simple_repeat 1 36 0 326 322 78 16 chr6 39619879 39620072 -142795170 - L1ME LINE L1 -387 5734 5522 2937 103 5 5 chr6 39620175 39620751 -142794491 + L1MA2 LINE L1 3238 3813 -3752 2040 157 0 7 chr6 39620762 39620895 -142794347 + AluSx SINE Alu 1 133 -179 1777 162 0 8 chr6 39620895 39621186 -142794056 + AluSx SINE Alu 24 312 0 2040 157 0 7 chr6 39621186 39621351 -142793891 + AluSx SINE Alu 133 297 -15 2334 119 0 0 chr6 39621353 39621655 -142793587 + AluSx SINE Alu 3 304 -8 12974 149 20 10 chr6 39621658 39622419 -142792823 + L1MA2 LINE L1 4139 4891 -2832 2565 127 9 41 chr6 39622419 39622697 -142792545 - MSTA LTR MaLR 0 428 168 2562 58 3 0 chr6 39622697 39622992 -142792250 - AluSp SINE Alu -17 296 1 2565 127 9 41 chr6 39622992 39623155 -142792087 - MSTA LTR MaLR -260 168 1 12974 149 20 10 chr6 39623155 39625737 -142789505 + L1MA2 LINE L1 4891 7528 -195 2246 105 20 0 chr6 39625737 39626033 -142789209 - AluSx SINE Alu -8 304 3 12974 149 20 10 chr6 39626033 39626232 -142789010 + L1MA2 LINE L1 7528 7723 0 2350 79 0 32 chr6 39626258 39626574 -142788668 + AluSg SINE Alu 3 308 -2 2257 105 0 40 chr6 39627232 39627378 -142787864 + AluSx SINE Alu 1 151 -161 2401 96 0 0 chr6 39627378 39627680 -142787562 + AluSg1 SINE Alu 1 302 -7 2257 105 0 40 chr6 39627680 39627856 -142787386 + AluSx SINE Alu 151 310 -2 327 274 21 0 chr6 39628362 39628457 -142786785 + L2 LINE L2 2609 2705 -609 1306 134 0 0 chr6 39629155 39629334 -142785908 - AluSg/x SINE Alu 0 310 132 2190 96 14 0 chr6 39629334 39629627 -142785615 - AluSx SINE Alu -15 297 1 585 212 17 8 chr6 39629646 39629764 -142785478 + FLAM_A SINE Alu 1 119 -14 368 206 81 42 chr6 39629765 39629889 -142785353 + L1MC4 LINE L1 6614 6703 -1339 249 104 0 42 chr6 39629890 39629938 -142785304 - L1MC4 LINE L1 -534 7508 7463 1814 65 5 0 chr6 39629938 39630152 -142785090 + AluY SINE Alu 1 215 -96 290 276 122 10 chr6 39631284 39631382 -142783860 - L2 LINE L2 -5 3308 3200 1412 237 52 2 chr6 39631820 39632288 -142782954 - L1ME3A LINE L1 -52 6118 5589 336 230 35 0 chr6 39632292 39632379 -142782863 + MER94 DNA DNA 31 120 -14 2262 110 0 0 chr6 39632867 39633167 -142782075 + AluSx SINE Alu 1 300 -12 2109 134 7 7 chr6 39633638 39633943 -142781299 + AluSx SINE Alu 1 305 -7 2427 86 3 0 chr6 39633945 39634248 -142780994 + AluSp SINE Alu 1 304 -9 1041 227 108 42 chr6 39634594 39634919 -142780323 + L2 LINE L2 2701 3003 -310 1680 151 23 8 chr6 39634919 39635178 -142780064 + AluSx SINE Alu 30 292 -20 1041 227 108 42 chr6 39635178 39635438 -142779804 + L2 LINE L2 3003 3313 0 2378 91 3 0 chr6 39635607 39635903 -142779339 - AluSp SINE Alu -16 297 1 2487 86 0 0 chr6 39636559 39636861 -142778381 - AluSg SINE Alu -8 302 1 603 130 0 65 chr6 39636861 39636969 -142778273 - AluSx SINE Alu -16 293 193 2329 99 3 0 chr6 39636969 39637263 -142777979 - AluSg SINE Alu -14 296 2 1488 143 0 10 chr6 39637265 39637474 -142777768 - AluSx SINE Alu -105 207 1 209 156 0 44 chr6 39637915 39637960 -142777282 + G-rich Low_complexity Low_complexity 4 46 0 223 233 58 58 chr6 39638013 39638099 -142777143 + L2 LINE L2 3184 3269 -3 226 324 0 27 chr6 39638106 39638217 -142777025 + G-rich Low_complexity Low_complexity 4 111 0 617 62 0 0 chr6 39639191 39639271 -142775971 - AluSp/q SINE Alu -20 293 214 958 230 9 0 chr6 39639923 39640149 -142775093 + MER33 DNA MER1_type 5 232 -92 594 196 75 8 chr6 39640149 39640282 -142774960 + FRAM SINE Alu 1 139 -37 405 210 8 17 chr6 39640324 39640340 -142774902 + MER33 DNA MER1_type 206 221 -2364 2264 94 21 0 chr6 39640340 39640628 -142774614 + AluSp SINE Alu 1 294 -19 405 210 8 17 chr6 39640628 39640730 -142774512 + MER33 DNA MER1_type 221 323 -1 354 240 34 126 chr6 39640733 39640908 -142774334 + L2 LINE L2 3151 3309 -4 44 80 0 0 chr6 39641464 39641564 -142773678 + GC_rich Low_complexity Low_complexity 1 100 0 310 277 25 34 chr6 39641943 39642062 -142773180 + MIR SINE MIR 61 178 -84 1536 152 0 12 chr6 39642589 39642750 -142772492 - AluJo SINE Alu -18 294 135 2004 70 4 16 chr6 39642750 39643007 -142772235 - AluSp SINE Alu -10 303 50 1536 152 0 12 chr6 39643007 39643088 -142772154 - AluJo SINE Alu -177 135 55 412 188 60 60 chr6 39643088 39643205 -142772037 - AluJ/FLAM SINE Alu -221 81 10 1639 129 0 9 chr6 39643281 39643506 -142771736 - AluSx SINE Alu -89 223 1 434 303 34 61 chr6 39643567 39643831 -142771411 + L1ME LINE L1 5522 5778 -343 2319 107 0 0 chr6 39643840 39644140 -142771102 + AluSg SINE Alu 1 300 -10 2372 102 0 0 chr6 39644142 39644445 -142770797 + AluSg SINE Alu 1 303 -7 1095 144 0 39 chr6 39644462 39644628 -142770614 - AluSx SINE Alu -21 291 131 216 0 0 0 chr6 39644628 39644652 -142770590 + (TG)n Simple_repeat Simple_repeat 1 24 0 1095 144 0 39 chr6 39644652 39644666 -142770576 - AluSx SINE Alu -181 131 118 2695 58 0 0 chr6 39645566 39645876 -142769366 - AluY SINE Alu -1 310 1 1030 117 0 0 chr6 39646214 39646351 -142768891 - AluSx SINE Alu -175 137 1 2419 197 26 91 chr6 39646428 39646790 -142768452 + L1ME1 LINE L1 4257 4641 -1505 1812 206 70 25 chr6 39646790 39647193 -142768049 - MLT1C LTR MaLR -4 463 80 1842 155 3 62 chr6 39647193 39647369 -142767873 - AluJb SINE Alu -9 303 118 2192 90 0 36 chr6 39647369 39647705 -142767537 - AluY SINE Alu 0 311 1 194 61 0 30 chr6 39647706 39647739 -142767503 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2207 88 0 18 chr6 39647739 39648023 -142767219 - AluSc SINE Alu -30 279 1 2315 105 0 3 chr6 39648025 39648321 -142766921 - AluSq SINE Alu -18 295 1 1842 155 3 62 chr6 39648321 39648460 -142766782 - AluJb SINE Alu -194 118 1 1812 206 70 25 chr6 39648460 39648498 -142766744 - MLT1C LTR MaLR -387 80 2 2419 197 26 91 chr6 39648498 39648771 -142766471 + L1ME1 LINE L1 4641 4840 -1306 2620 54 0 0 chr6 39648771 39649069 -142766173 - AluY SINE Alu -13 298 1 2419 197 26 91 chr6 39649069 39649169 -142766073 + L1ME1 LINE L1 4840 4945 -1201 612 198 24 0 chr6 39649175 39649301 -142765941 + FLAM_C SINE Alu 13 141 -2 260 51 0 26 chr6 39649301 39649340 -142765902 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1345 160 14 45 chr6 39649340 39649439 -142765803 + L1ME1 LINE L1 5004 5105 -1041 2361 101 0 0 chr6 39649439 39649737 -142765505 + AluSx SINE Alu 1 298 -14 2125 102 17 17 chr6 39649739 39650063 -142765179 + AluSx SINE Alu 3 312 0 1345 160 14 45 chr6 39650063 39650247 -142764995 + L1ME1 LINE L1 5106 5281 -865 1518 140 126 35 chr6 39650251 39650537 -142764705 + AluSx SINE Alu 1 312 0 706 238 0 0 chr6 39650546 39650689 -142764553 + AluJb SINE Alu 164 306 -6 1506 188 57 108 chr6 39650764 39650847 -142764395 + L1ME1 LINE L1 5303 5389 -777 1965 152 13 13 chr6 39650847 39651157 -142764085 + AluJb SINE Alu 1 310 -2 1506 188 57 108 chr6 39651157 39651301 -142763941 + L1ME1 LINE L1 5389 5539 -627 2033 147 0 32 chr6 39651301 39651614 -142763628 - AluJo SINE Alu -7 305 3 1506 188 57 108 chr6 39651614 39652043 -142763199 + L1ME1 LINE L1 5539 6148 -18 2354 100 0 6 chr6 39652055 39652366 -142762876 + AluSc SINE Alu 1 309 0 2256 105 0 19 chr6 39652557 39652870 -142762372 + AluSg SINE Alu 1 307 -3 361 275 42 49 chr6 39652905 39653008 -142762234 + L1ME4a LINE L1 5963 6066 -55 2440 89 0 16 chr6 39653008 39653321 -142761921 - AluSq SINE Alu -5 308 1 361 275 42 49 chr6 39653321 39653359 -142761883 + L1ME4a LINE L1 6066 6103 -18 248 0 31 0 chr6 39653523 39653555 -142761687 + (TA)n Simple_repeat Simple_repeat 1 33 0 1602 133 4 27 chr6 39653555 39653734 -142761508 - AluJb SINE Alu -3 309 136 2203 118 7 10 chr6 39653734 39653905 -142761337 - AluSx SINE Alu -8 304 133 2184 110 7 0 chr6 39653905 39654205 -142761037 - AluSg SINE Alu -8 302 1 2203 118 7 10 chr6 39654205 39654337 -142760905 - AluSx SINE Alu -179 133 2 1602 133 4 27 chr6 39654337 39654413 -142760829 - AluJb SINE Alu -176 136 60 183 114 0 0 chr6 39654424 39654459 -142760783 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1645 62 0 0 chr6 39654586 39654778 -142760464 + AluY SINE Alu 1 192 -119 352 169 0 0 chr6 39654801 39654860 -142760382 - AluS SINE Alu -244 59 1 563 188 0 83 chr6 39654973 39655117 -142760125 + FLAM_A SINE Alu 1 132 -1 2386 66 0 30 chr6 39655246 39655550 -142759692 - AluY SINE Alu -16 295 1 183 114 0 0 chr6 39655677 39655712 -142759530 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 570 15 0 0 chr6 39655714 39655781 -142759461 + (TA)n Simple_repeat Simple_repeat 1 67 0 2052 120 0 24 chr6 39655781 39656073 -142759169 - AluSx SINE Alu -27 285 1 200 118 0 0 chr6 39656276 39656310 -142758932 + MIR SINE MIR 109 142 -66 931 221 47 71 chr6 39656368 39656825 -142758417 + MLT1J LTR MaLR 1 490 -21 193 182 0 0 chr6 39656985 39657018 -142758224 - L2 LINE L2 -1037 2277 2245 2076 201 117 10 chr6 39657092 39657580 -142757662 - MLT1F LTR MaLR -2 540 1 1806 151 41 20 chr6 39657839 39658131 -142757111 + AluJb SINE Alu 1 298 -14 405 246 51 17 chr6 39658205 39658323 -142756919 + MIR SINE MIR 127 248 -14 202 292 83 14 chr6 39659525 39659597 -142755645 - L3b LINE CR1 -2 1581 1505 617 306 94 0 chr6 39659810 39660045 -142755197 - MLT1L LTR MaLR -49 566 310 645 181 159 26 chr6 39660133 39660371 -142754871 + LTR40b LTR ERVL 1 269 -250 2249 98 11 0 chr6 39660371 39660658 -142754584 + AluSx SINE Alu 1 290 -22 645 181 159 26 chr6 39660658 39660682 -142754560 + LTR40b LTR ERVL 269 288 -231 505 224 25 75 chr6 39660679 39660773 -142754469 - MLT1J LTR MaLR -358 153 56 * 240 35 0 0 chr6 39660773 39660802 -142754440 + (TATG)n Simple_repeat Simple_repeat 2 30 0 909 135 83 203 chr6 39660802 39660945 -142754297 - AluJo SINE Alu -16 286 127 2585 55 0 3 chr6 39660945 39661252 -142753990 - AluY SINE Alu -5 306 1 909 135 83 203 chr6 39661252 39661272 -142753970 - AluJo SINE Alu -175 127 106 195 42 0 0 chr6 39661272 39661296 -142753946 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2139 111 17 0 chr6 39661298 39661586 -142753656 - AluSp SINE Alu -20 293 1 909 135 83 203 chr6 39661586 39661743 -142753499 - AluJo SINE Alu -197 105 1 505 224 25 75 chr6 39661743 39661808 -142753434 - MLT1J LTR MaLR -453 58 1 471 294 146 30 chr6 39662082 39662292 -142752950 + L2 LINE L2 1983 2167 -1147 7076 120 38 35 chr6 39662292 39663564 -142751678 + MER52C LTR ERV1 4 1278 0 471 294 146 30 chr6 39663564 39663680 -142751562 + L2 LINE L2 2167 2268 -1046 1545 181 11 18 chr6 39663680 39663961 -142751281 + AluJo SINE Alu 1 279 -33 216 0 0 0 chr6 39663965 39663989 -142751253 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 471 294 146 30 chr6 39663989 39664195 -142751047 + L2 LINE L2 2270 2451 -863 2350 103 0 0 chr6 39664195 39664495 -142750747 - AluSg SINE Alu -10 300 1 471 294 146 30 chr6 39664495 39664589 -142750653 + L2 LINE L2 2451 2786 -528 890 251 224 19 chr6 39664634 39665000 -142750242 + MLT1J LTR MaLR 67 507 -4 527 265 69 11 chr6 39665024 39665213 -142750029 + L2 LINE L2 2855 3054 -218 1764 166 57 7 chr6 39665392 39665688 -142749554 - AluJb SINE Alu 0 312 2 2452 85 0 3 chr6 39665894 39666201 -142749041 + AluSg SINE Alu 1 306 -4 812 272 19 27 chr6 39666204 39666461 -142748781 - L1ME1 LINE L1 -7 6159 5905 379 227 10 10 chr6 39666464 39666561 -142748681 - L1ME1 LINE L1 -1159 4987 4891 336 122 61 37 chr6 39666554 39666636 -142748606 - L1ME1 LINE L1 -2171 3975 3892 * 1534 141 8 17 chr6 39666640 39666874 -142748368 + AluJo SINE Alu 6 237 -75 4210 147 157 91 chr6 39666881 39668173 -142747069 - pTR5 LTR ERV1 0 2438 741 359 153 0 0 chr6 39668184 39668243 -142746999 + AluJo SINE Alu 241 299 -3 273 342 86 13 chr6 39668320 39668472 -142746770 + MIR SINE MIR 38 200 -62 453 191 71 64 chr6 39668495 39668636 -142746606 - L1M4 LINE L1 -2270 3876 3735 2089 145 0 7 chr6 39668637 39668941 -142746301 - AluJb SINE Alu -10 302 1 364 229 0 0 chr6 39668941 39669011 -142746231 - AluSp SINE Alu -100 203 134 180 0 0 0 chr6 39669026 39669046 -142746196 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 917 145 14 0 chr6 39669046 39669173 -142746069 - FRAM SINE Alu -163 149 18 696 167 68 12 chr6 39669173 39669335 -142745907 - L1M4 LINE L1 -2403 3743 3573 771 256 0 28 chr6 39669337 39669348 -142745894 - AluJo/FRAM SINE Alu -1 311 301 2048 102 65 14 chr6 39669348 39669641 -142745601 - AluSx SINE Alu 0 312 5 771 256 0 28 chr6 39669641 39669809 -142745433 - AluJo/FRAM SINE Alu -11 301 137 2314 111 0 13 chr6 39669814 39670120 -142745122 - AluSc SINE Alu -7 302 1 2460 234 63 20 chr6 39670121 39670196 -142745046 - L1M4 LINE L1 -2572 3574 3504 2154 117 3 13 chr6 39670196 39670495 -142744747 - AluSq SINE Alu -17 296 1 2460 234 63 20 chr6 39670495 39670811 -142744431 - L1M4 LINE L1 -2642 3504 3203 2258 99 7 7 chr6 39670811 39671103 -142744139 - AluSx SINE Alu -20 292 1 2460 234 63 20 chr6 39671103 39671539 -142743703 - L1M4 LINE L1 -2943 3203 2711 962 183 48 39 chr6 39671524 39671754 -142743488 - L1 LINE L1 -2419 3727 3496 * 786 216 12 75 chr6 39671749 39671897 -142743345 - L1 LINE L1 -3381 2765 2638 * 2115 92 65 0 chr6 39671897 39672189 -142743053 - AluSp SINE Alu -1 312 2 786 216 12 75 chr6 39672189 39672294 -142742948 - L1 LINE L1 -3508 2638 2528 273 209 30 0 chr6 39672304 39672371 -142742871 + L1MA7 LINE L1 5898 5966 -325 1619 68 0 5 chr6 39672375 39672567 -142742675 + AluY SINE Alu 1 191 -120 466 90 0 0 chr6 39672567 39672634 -142742608 + AluY SINE Alu 233 299 -10 499 171 8 14 chr6 39672634 39672853 -142742389 + L1MA7 LINE L1 5964 6287 -4 1490 192 34 44 chr6 39672888 39673185 -142742057 + AluJb SINE Alu 1 294 -18 246 274 128 10 chr6 39673186 39673288 -142741954 - L1ME LINE L1 -455 5707 5594 462 262 25 0 chr6 39673754 39673876 -142741366 - L1ME LINE L1 -564 5600 5476 827 300 22 0 chr6 39673882 39674152 -142741090 - L1 LINE L1 -3628 2518 2243 984 66 0 0 chr6 39674155 39674276 -142740966 - AluY SINE Alu -8 303 183 1972 50 0 0 chr6 39674277 39674498 -142740744 - AluY SINE Alu -90 221 1 2339 102 3 0 chr6 39674538 39674842 -142740400 - AluSx SINE Alu -7 305 1 27 0 0 0 chr6 39674945 39674972 -142740270 + AT_rich Low_complexity Low_complexity 1 27 0 2192 125 0 7 chr6 39674979 39675282 -142739960 + AluSg SINE Alu 1 301 -9 2717 134 41 8 chr6 39675282 39675768 -142739474 - L1MB3 LINE L1 -41 6378 5877 1217 97 6 11 chr6 39675769 39675945 -142739297 + THE1A LTR MaLR 2 176 -179 4673 87 5 15 chr6 39675945 39676522 -142738720 + THE1A-int LTR MaLR 932 1503 -77 2397 80 0 25 chr6 39676522 39676836 -142738406 + AluY SINE Alu 1 306 -5 4673 87 5 15 chr6 39676836 39676914 -142738328 + THE1A-int LTR MaLR 1503 1580 0 2638 74 6 0 chr6 39676914 39677267 -142737975 + THE1A LTR MaLR 1 355 0 1372 130 32 112 chr6 39677267 39677309 -142737933 - L1MB3 LINE L1 -538 5881 5837 838 168 0 0 chr6 39677309 39677440 -142737802 - FLAM_A SINE Alu -2 131 1 1372 130 32 112 chr6 39677440 39677652 -142737590 - L1MB3 LINE L1 -582 5837 5610 789 159 0 36 chr6 39677652 39677790 -142737452 - FLAM_C SINE Alu 0 133 1 1372 130 32 112 chr6 39677790 39677940 -142737302 - L1MB3 LINE L1 -809 5610 2414 2239 128 0 0 chr6 39677969 39678265 -142736977 + AluSx SINE Alu 1 296 -16 297 0 0 0 chr6 39678265 39678278 -142736964 + (CA)n Simple_repeat Simple_repeat 1 46 0 297 0 0 0 chr6 39678278 39678311 -142736931 + (CA)n Simple_repeat Simple_repeat 2 34 0 311 304 36 18 chr6 39678386 39678498 -142736744 + L1MCa LINE L1 2018 2131 -4295 184 45 119 0 chr6 39678499 39678566 -142736676 + (TA)n Simple_repeat Simple_repeat 2 76 0 1572 61 0 0 chr6 39678566 39678767 -142736475 + AluY SINE Alu 102 302 0 380 200 12 0 chr6 39678770 39678855 -142736387 - L1MEc LINE L1 -4049 2558 2473 1523 202 3 23 chr6 39678866 39679168 -142736074 - AluJo SINE Alu -16 296 1 2578 61 0 0 chr6 39679173 39679483 -142735759 - AluY SINE Alu -1 310 1 2605 74 0 0 chr6 39679483 39679793 -142735449 - AluSg SINE Alu 0 310 1 2274 89 7 7 chr6 39679797 39680099 -142735143 - AluY SINE Alu -9 302 1 736 213 69 63 chr6 39680100 39680156 -142735086 - L1MEc LINE L1 -4128 2479 2425 2355 88 0 0 chr6 39680156 39680451 -142734791 - AluY SINE Alu -16 295 1 216 0 0 0 chr6 39680455 39680479 -142734763 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2230 99 7 0 chr6 39680483 39680775 -142734467 - AluSx SINE Alu -18 294 1 736 213 69 63 chr6 39680775 39681055 -142734187 - L1MEc LINE L1 -4186 2421 2131 375 143 12 71 chr6 39681055 39681083 -142734159 - L1M4 LINE L1 -3371 2775 2747 2303 108 3 0 chr6 39681083 39681388 -142733854 - AluSq SINE Alu -7 306 1 375 143 12 71 chr6 39681388 39681443 -142733799 - L1M4 LINE L1 -3399 2747 2697 2086 123 31 3 chr6 39681497 39681789 -142733453 - AluSx SINE Alu -12 300 1 731 172 0 15 chr6 39681831 39681958 -142733284 + FLAM_A SINE Alu 1 127 -175 2433 94 10 0 chr6 39681958 39682267 -142732975 + AluSq SINE Alu 1 312 -1 583 272 59 38 chr6 39682331 39682444 -142732798 - L1M1 LINE L1 -1926 4500 4391 5987 67 19 4 chr6 39682444 39682800 -142732442 - L1PB1 LINE L1 -1 6150 5801 486 0 0 0 chr6 39682800 39682854 -142732388 + (TA)n Simple_repeat Simple_repeat 1 54 0 5987 67 19 4 chr6 39682854 39682984 -142732258 - L1PB1 LINE L1 -350 5801 5674 2148 105 0 53 chr6 39682984 39683307 -142731935 - AluSx SINE Alu -6 306 1 5987 67 19 4 chr6 39683307 39683510 -142731732 - L1PB1 LINE L1 -477 5674 5475 2360 108 0 13 chr6 39683510 39683824 -142731418 - AluY SINE Alu -1 310 1 5987 67 19 4 chr6 39683824 39684454 -142730788 - L1PB1 LINE L1 -676 5475 4854 583 272 59 38 chr6 39684454 39684672 -142730570 - L1M1 LINE L1 -2035 4391 1758 1088 106 0 0 chr6 39684711 39684852 -142730390 - AluJb SINE Alu -171 141 1 3938 115 19 3 chr6 39684953 39685537 -142729705 - HUERS-P3 LTR ERV1 -2920 5999 5407 26 64 0 0 chr6 39686266 39686313 -142728929 + GC_rich Low_complexity Low_complexity 1 47 0 211 176 39 20 chr6 39686451 39686502 -142728740 + MIR SINE MIR 68 119 -89 745 161 0 29 chr6 39687291 39687428 -142727814 - FLAM_C SINE Alu 0 133 1 543 255 159 36 chr6 39689238 39689489 -142725753 - MER5C DNA MER1_type -42 282 1 327 252 203 0 chr6 39690315 39690438 -142724804 - MIR SINE MIR -60 202 55 249 250 58 58 chr6 39691802 39691906 -142723336 - MIR3 SINE MIR -11 197 94 247 256 12 23 chr6 39692974 39693060 -142722182 + C-rich Low_complexity Low_complexity 6 90 0 222 289 7 37 chr6 39697172 39697307 -142717935 + (CGGGG)n Simple_repeat Simple_repeat 4 134 0 2174 110 0 3 chr6 39697628 39697920 -142717322 - AluSx SINE Alu -21 291 1 545 208 167 0 chr6 39698392 39698536 -142716706 + L1MEc LINE L1 859 1026 -5581 2289 104 7 0 chr6 39698546 39698843 -142716399 + AluSq SINE Alu 1 299 -14 271 128 0 0 chr6 39698850 39698889 -142716353 + Alu SINE Alu 1 39 -264 987 240 39 87 chr6 39698889 39699245 -142715997 + L1MEc LINE L1 1048 1419 -5007 2335 107 3 3 chr6 39699245 39699555 -142715687 + AluSp SINE Alu 1 310 -3 987 240 39 87 chr6 39699555 39699765 -142715477 + L1MEc LINE L1 1419 1579 -4847 2281 81 0 3 chr6 39699765 39700092 -142715150 - AluY SINE Alu 0 326 1 987 240 39 87 chr6 39700092 39700120 -142715122 + L1MEc LINE L1 1579 1607 -4819 2402 75 7 13 chr6 39700248 39700556 -142714686 - AluY SINE Alu -1 310 5 2080 115 24 24 chr6 39700767 39701063 -142714179 + AluSx SINE Alu 1 296 -16 331 211 58 29 chr6 39701122 39701226 -142714016 - Charlie5 DNA MER1_type -10 2602 2496 874 200 7 7 chr6 39701230 39701380 -142713862 + FRAM SINE Alu 1 142 -34 2235 112 3 6 chr6 39701407 39701720 -142713522 + AluSx SINE Alu 1 312 0 339 148 164 23 chr6 39701728 39701822 -142713420 - Charlie5 DNA MER1_type -116 2469 2351 1653 163 83 0 chr6 39701822 39701959 -142713283 + AluJb SINE Alu 1 125 -187 2401 87 0 22 chr6 39701959 39702271 -142712971 + AluSp SINE Alu 1 305 -8 1653 163 83 0 chr6 39702271 39702409 -142712833 + AluJb SINE Alu 125 299 -13 339 148 164 23 chr6 39702409 39702442 -142712800 - Charlie5 DNA MER1_type -234 2351 2324 362 294 141 12 chr6 39703198 39703361 -142711881 + MIR SINE MIR 28 211 -51 519 160 32 0 chr6 39704342 39704436 -142710806 + FLAM_A SINE Alu 34 130 -12 2239 118 16 0 chr6 39704456 39704762 -142710480 - AluSx SINE Alu -1 311 1 1663 163 0 45 chr6 39705302 39705591 -142709651 + AluJb SINE Alu 1 276 -36 702 152 64 0 chr6 39705615 39705740 -142709502 + FLAM_A SINE Alu 1 133 0 1570 124 153 18 chr6 39707236 39707510 -142707732 + AluYb8 SINE Alu 1 311 -7 2201 104 0 10 chr6 39707520 39707845 -142707397 + AluSg SINE Alu 1 322 0 2333 198 37 0 chr6 39707998 39708484 -142706758 - L1ME1 LINE L1 -218 5948 5445 1456 143 58 0 chr6 39708554 39708812 -142706430 + L1MA6 LINE L1 6006 6278 -22 2363 93 3 3 chr6 39709657 39709958 -142705284 + AluSp SINE Alu 1 301 -12 444 200 154 0 chr6 39710016 39710126 -142705116 - FLAM_A SINE Alu -8 134 8 1354 170 117 36 chr6 39710192 39710228 -142705014 - L1ME1 LINE L1 -5 6161 6129 1881 162 7 17 chr6 39710228 39710524 -142704718 - AluJb SINE Alu -19 293 1 1354 170 117 36 chr6 39710524 39710846 -142704396 - L1ME1 LINE L1 -37 6129 5774 228 35 0 0 chr6 39710848 39710877 -142704365 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2009 100 0 0 chr6 39710894 39711144 -142704098 - AluSq SINE Alu -63 250 1 2144 117 20 0 chr6 39711157 39711455 -142703787 - AluSx SINE Alu -8 304 1 903 226 16 5 chr6 39711562 39711752 -142703490 + MER90 LTR ERV1 1 192 -422 485 125 0 0 chr6 39711760 39711832 -142703410 + AluS SINE Alu 2 73 -240 854 230 55 0 chr6 39711832 39712032 -142703210 + MER90 LTR ERV1 402 612 -2 2257 119 7 0 chr6 39712068 39712370 -142702872 - AluSx SINE Alu -8 304 1 2360 118 0 6 chr6 39712477 39712791 -142702451 + AluSx SINE Alu 1 312 0 254 206 48 0 chr6 39712818 39712881 -142702361 - L1ME1 LINE L1 -450 5714 5649 398 103 0 0 chr6 39712881 39712939 -142702303 - MLT1D LTR MaLR 0 505 448 2035 137 10 7 chr6 39712940 39713233 -142702009 - AluJb SINE Alu -18 294 1 1056 136 0 0 chr6 39713284 39713431 -142701811 - FRAM SINE Alu -23 153 7 2560 67 0 0 chr6 39713440 39713740 -142701502 - AluSq SINE Alu -13 300 1 1838 200 24 86 chr6 39713742 39713850 -142701392 - L1ME1 LINE L1 -846 5300 5187 2194 141 0 0 chr6 39713850 39714155 -142701087 - AluSx SINE Alu -7 305 1 1838 200 24 86 chr6 39714155 39714225 -142701017 - L1ME1 LINE L1 -959 5187 5114 2098 129 24 0 chr6 39714225 39714519 -142700723 - AluJb SINE Alu -11 301 1 1838 200 24 86 chr6 39714519 39714534 -142700708 - L1ME1 LINE L1 -1032 5114 5100 2274 88 10 14 chr6 39714534 39714830 -142700412 - AluSq SINE Alu -18 295 1 1838 200 24 86 chr6 39714830 39714939 -142700303 - L1ME1 LINE L1 -1046 5100 4986 3412 147 29 8 chr6 39714939 39715298 -142699944 - LTR26 LTR ERV1 0 603 226 2238 109 3 22 chr6 39715298 39715610 -142699632 - AluSx SINE Alu -6 306 1 3412 147 29 8 chr6 39715610 39715841 -142699401 - LTR26 LTR ERV1 -377 226 1 1838 200 24 86 chr6 39715841 39716136 -142699106 - L1ME1 LINE L1 -1160 4986 4742 2057 143 0 10 chr6 39716136 39716437 -142698805 - AluJo SINE Alu -14 298 1 1838 200 24 86 chr6 39716437 39716501 -142698741 - L1ME1 LINE L1 -1404 4742 4676 459 35 0 0 chr6 39716507 39716564 -142698678 + (TG)n Simple_repeat Simple_repeat 2 58 0 1775 122 42 35 chr6 39716564 39716843 -142698399 - AluJo SINE Alu -24 288 5 39 0 0 0 chr6 39716852 39716891 -142698351 + AT_rich Low_complexity Low_complexity 1 39 0 939 191 77 26 chr6 39716894 39717034 -142698208 - AluJo SINE Alu -24 288 157 2196 107 0 30 chr6 39717034 39717334 -142697908 - AluSx SINE Alu -21 291 1 1240 180 136 37 chr6 39717338 39717471 -142697771 - AluJo SINE Alu -13 299 181 2001 141 14 0 chr6 39717471 39717768 -142697474 - AluJb SINE Alu -11 301 1 1240 180 136 37 chr6 39717768 39717906 -142697336 - AluJo SINE Alu -131 181 1 939 191 77 26 chr6 39717906 39717954 -142697288 - AluJo SINE Alu -157 155 85 826 225 0 24 chr6 39717981 39718150 -142697092 - AluJb SINE Alu -51 261 97 1123 230 47 12 chr6 39718161 39718500 -142696742 - L1M4 LINE L1 -1045 5101 4755 1101 118 13 0 chr6 39718501 39718653 -142696589 - AluSg/x SINE Alu -17 295 142 955 265 12 29 chr6 39718655 39718814 -142696428 - L1M4 LINE L1 -1384 4762 4602 2171 119 10 0 chr6 39718814 39719108 -142696134 - AluSq SINE Alu -16 297 1 955 265 12 29 chr6 39719108 39719291 -142695951 - L1M4 LINE L1 -1544 4602 4426 2146 73 3 28 chr6 39719291 39719578 -142695664 - AluY SINE Alu -2 309 30 1934 108 12 4 chr6 39719588 39719846 -142695396 - AluSq SINE Alu -20 293 34 2022 90 112 0 chr6 39719847 39720125 -142695117 - AluSq SINE Alu -4 309 1 286 139 0 0 chr6 39720270 39720313 -142694929 - L1ME LINE L1 -607 5559 5517 2122 101 7 0 chr6 39720313 39720633 -142694609 + AluSx SINE Alu 5 326 0 2252 75 0 34 chr6 39720633 39720976 -142694266 + AluY SINE Alu 1 333 0 474 132 0 0 chr6 39720999 39721075 -142694167 + (TC)n Simple_repeat Simple_repeat 1 76 0 1911 164 3 0 chr6 39721076 39721368 -142693874 - AluJb SINE Alu -19 293 1 714 185 51 10 chr6 39721376 39721571 -142693671 - L1ME LINE L1 -811 5335 5133 2262 100 0 0 chr6 39721590 39721869 -142693373 - AluSg SINE Alu -31 279 1 850 159 0 7 chr6 39721879 39722017 -142693225 - AluJo/FRAM SINE Alu -1 311 175 389 81 16 0 chr6 39722017 39722079 -142693163 + AluSp/q SINE Alu 241 303 0 866 192 14 112 chr6 39722080 39722261 -142692981 - L1ME LINE L1 -1211 4935 4791 2257 117 10 0 chr6 39722261 39722569 -142692673 - AluSp SINE Alu -2 311 1 866 192 14 112 chr6 39722569 39722674 -142692568 - L1ME LINE L1 -1355 4791 4677 734 223 91 65 chr6 39722713 39722880 -142692362 + L1MD3 LINE L1 7657 7818 -177 1702 179 7 23 chr6 39722880 39723181 -142692061 + AluJb SINE Alu 1 296 -16 1857 186 0 0 chr6 39723187 39723483 -142691759 + AluJb SINE Alu 1 296 -16 2160 125 0 0 chr6 39723487 39723788 -142691454 + AluSg SINE Alu 1 301 0 734 223 91 65 chr6 39723788 39723916 -142691326 + L1MD3 LINE L1 7824 7973 -22 1869 123 56 0 chr6 39723916 39724211 -142691031 + AluSx SINE Alu 1 310 0 652 132 0 26 chr6 39724251 39724365 -142690877 + AluJo/FLAM SINE Alu 18 128 -184 2715 3 0 0 chr6 39724367 39724687 -142690555 + AluY SINE Alu 1 320 0 1757 235 21 45 chr6 39724687 39725192 -142690050 - MLT1E LTR MaLR -60 533 42 1769 231 154 38 chr6 39725271 39725547 -142689695 - L1MC5 LINE L1 -523 7438 7195 2066 112 0 85 chr6 39725547 39725913 -142689329 - AluSx SINE Alu 0 312 1 1769 231 154 38 chr6 39725913 39726272 -142688970 - L1MC5 LINE L1 -766 7195 6704 700 211 72 0 chr6 39726272 39726424 -142688818 - FRAM SINE Alu -3 163 1 1769 231 154 38 chr6 39726424 39726520 -142688722 - L1MC5 LINE L1 -1257 6704 6621 1974 118 38 14 chr6 39726520 39726808 -142688434 + AluSx SINE Alu 1 295 -17 446 278 105 33 chr6 39727423 39727635 -142687607 - MLT1H LTR MaLR -273 276 51 2849 13 0 0 chr6 39728135 39728436 -142686806 - AluYa5 SINE Alu -10 301 1 373 236 57 57 chr6 39729073 39729230 -142686012 + MER5A DNA MER1_type 4 160 -29 698 167 0 8 chr6 39729327 39729453 -142685789 + FLAM_C SINE Alu 11 135 -8 2226 106 3 0 chr6 39729455 39729774 -142685468 + AluSp SINE Alu 1 320 0 2249 117 3 0 chr6 39729777 39730077 -142685165 + AluSq SINE Alu 1 301 -12 33 25 0 0 chr6 39730077 39730117 -142685125 + AT_rich Low_complexity Low_complexity 1 40 0 403 224 37 28 chr6 39730120 39730227 -142685015 + MIR SINE MIR 97 204 -58 346 242 24 65 chr6 39730799 39730923 -142684319 - MIR SINE MIR -110 152 34 563 285 44 0 chr6 39730964 39731101 -142684141 + MIR SINE MIR 46 188 -74 1897 191 77 29 chr6 39731112 39731594 -142683648 - MLT1D LTR MaLR 0 505 1 331 267 55 0 chr6 39731638 39731738 -142683504 + MIR SINE MIR 54 155 -61 2184 123 3 0 chr6 39732076 39732386 -142682856 - AluY SINE Alu 0 311 1 1770 170 3 22 chr6 39732411 39732722 -142682520 + AluJb SINE Alu 1 305 -7 1743 172 3 7 chr6 39732756 39733041 -142682201 + AluJb SINE Alu 10 293 -19 968 184 38 0 chr6 39733041 39733248 -142681994 - L1MB5 LINE L1 -50 6124 5902 1714 166 7 11 chr6 39733624 39733930 -142681312 - AluSx SINE Alu 0 305 1 841 229 52 52 chr6 39733967 39734238 -142681004 + L2 LINE L2 3041 3311 -2 2441 87 0 3 chr6 39734797 39735095 -142680147 + AluSc SINE Alu 1 297 -12 736 179 0 0 chr6 39735095 39735212 -142680030 - FLAM_A SINE Alu -15 118 2 569 217 182 34 chr6 39735243 39735628 -142679614 - MLT1H LTR MaLR -7 588 93 2345 110 0 0 chr6 39735628 39735929 -142679313 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 39735938 39735959 -142679283 + AT_rich Low_complexity Low_complexity 1 21 0 2086 119 0 23 chr6 39735970 39736273 -142678969 - AluSq SINE Alu -17 296 1 275 313 76 30 chr6 39736304 39736435 -142678807 - MIR3 SINE MIR -45 163 27 3006 128 120 77 chr6 39736684 39736977 -142678265 - MER39 LTR ERV1 0 707 428 6791 118 73 40 chr6 39736977 39738214 -142677028 + MER52C LTR ERV1 1 1278 0 3006 128 120 77 chr6 39738214 39738593 -142676649 - MER39 LTR ERV1 -279 428 6 258 330 11 0 chr6 39738698 39738786 -142676456 + MIR SINE MIR 33 121 -87 1845 177 0 0 chr6 39739113 39739419 -142675823 + AluSx SINE Alu 1 306 0 256 130 65 0 chr6 39739649 39739695 -142675547 + MIR SINE MIR 114 162 -100 659 261 0 13 chr6 39739769 39739922 -142675320 + MIR SINE MIR 15 165 -97 2482 84 3 0 chr6 39739957 39740253 -142674989 + AluSp SINE Alu 1 297 -16 518 248 9 18 chr6 39740744 39740887 -142674355 + MIR SINE MIR 14 142 -66 2397 103 0 0 chr6 39741304 39741605 -142673637 + AluSg SINE Alu 1 301 -9 187 100 25 25 chr6 39741706 39741746 -142673496 + (GA)n Simple_repeat Simple_repeat 2 41 0 414 0 0 0 chr6 39741873 39741919 -142673323 + (TG)n Simple_repeat Simple_repeat 2 47 0 2027 148 0 13 chr6 39742450 39742755 -142672487 + AluJo SINE Alu 1 301 -11 269 230 90 30 chr6 39742835 39742935 -142672307 - MIR SINE MIR 0 262 157 288 0 0 0 chr6 39742940 39742972 -142672270 + (CAT)n Simple_repeat Simple_repeat 1 32 0 336 315 63 9 chr6 39743023 39743134 -142672108 - MIR SINE MIR -92 170 54 199 333 14 0 chr6 39743112 39743181 -142672061 - MIR SINE MIR -73 135 66 * 197 306 0 47 chr6 39743475 39743560 -142671682 + L2 LINE L2 3005 3085 -187 24 0 0 0 chr6 39743973 39743997 -142671245 + AT_rich Low_complexity Low_complexity 1 24 0 2488 59 10 0 chr6 39743997 39744304 -142670938 - AluY SINE Alu -1 310 1 2427 57 4 0 chr6 39744519 39744800 -142670442 + AluSp SINE Alu 1 282 -31 703 24 0 0 chr6 39744717 39744800 -142670442 + AluSp/q SINE Alu 200 324 0 224 48 24 24 chr6 39744800 39744842 -142670400 + (CAAAA)n Simple_repeat Simple_repeat 1 100 0 346 278 63 16 chr6 39744858 39744984 -142670258 + L2 LINE L2 3168 3299 -14 221 300 167 42 chr6 39746788 39747051 -142668191 + L2 LINE L2 2977 3272 0 2572 72 3 0 chr6 39747179 39747483 -142667759 - AluSp SINE Alu -8 305 1 195 69 0 0 chr6 39748038 39748067 -142667175 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 273 281 120 52 chr6 39748148 39748497 -142666745 + L2 LINE L2 2851 3223 -49 377 247 173 37 chr6 39749119 39749390 -142665852 - LTR16A LTR ERVL -89 361 54 2403 68 4 0 chr6 39749801 39750104 -142665138 - AluSg1 SINE Alu 0 304 1 1178 142 71 5 chr6 39750145 39750342 -142664900 - AluJo SINE Alu -16 296 87 632 178 0 89 chr6 39750387 39750559 -142664683 - MER53 DNA DNA -3 186 33 2425 96 0 6 chr6 39750559 39750873 -142664369 - AluSq SINE Alu -1 312 1 632 178 0 89 chr6 39750873 39750902 -142664340 - MER53 DNA DNA -156 33 3 1903 85 0 4 chr6 39751679 39751926 -142663316 + AluSg SINE Alu 64 309 -1 724 185 159 15 chr6 39752514 39752709 -142662533 - MIR SINE MIR -31 231 9 245 311 19 0 chr6 39753228 39753334 -142661908 + MIR SINE MIR 30 137 -71 238 283 35 18 chr6 39753349 39753462 -142661780 - L1MC5 LINE L1 -36 7925 7811 1380 212 44 21 chr6 39753463 39753850 -142661392 - L1MC5 LINE L1 -232 7729 7334 1125 244 142 22 chr6 39753851 39754133 -142661109 + L2 LINE L2 2474 2721 -592 2301 118 3 0 chr6 39754133 39754437 -142660805 + AluSx SINE Alu 1 305 -7 1125 244 142 22 chr6 39754437 39754817 -142660425 + L2 LINE L2 2721 3224 -89 26 0 0 0 chr6 39754925 39754951 -142660291 + AT_rich Low_complexity Low_complexity 1 26 0 391 213 13 0 chr6 39754994 39755069 -142660173 - LTR16A1 LTR ERVL 0 457 382 759 240 30 70 chr6 39755103 39755374 -142659868 - LTR16A1 LTR ERVL -171 286 27 375 269 0 90 chr6 39755407 39755563 -142659679 - MIR SINE MIR -74 188 47 246 313 62 9 chr6 39755641 39755753 -142659489 - L2 LINE L2 -9 3304 3187 204 224 20 20 chr6 39755826 39755875 -142659367 - L2 LINE L2 -11 3302 3254 257 250 17 69 chr6 39755895 39756011 -142659231 - MIR SINE MIR -117 145 36 900 110 0 22 chr6 39756834 39757046 -142658196 + FLAM_C SINE Alu 1 209 0 475 247 76 36 chr6 39757240 39757363 -142657879 - L1MC5 LINE L1 -797 7164 7047 1962 156 0 13 chr6 39757363 39757678 -142657564 - AluJo SINE Alu -1 311 1 2281 109 0 3 chr6 39757680 39757984 -142657258 - AluSg SINE Alu -7 303 1 2456 100 0 0 chr6 39757986 39758296 -142656946 - AluSg SINE Alu 0 310 1 475 247 76 36 chr6 39758296 39758389 -142656853 - L1MC5 LINE L1 -914 7047 6933 1595 178 108 46 chr6 39758408 39758825 -142656417 - MSTB2 LTR MaLR 0 457 15 1688 159 29 63 chr6 39759064 39759379 -142655863 - AluJb SINE Alu -6 306 3 2335 119 0 0 chr6 39759439 39759750 -142655492 - AluSx SINE Alu 0 312 2 337 273 31 98 chr6 39759767 39759842 -142655400 - L1MB8 LINE L1 -295 5883 5805 2057 162 0 3 chr6 39759842 39760151 -142655091 - AluJb SINE Alu -4 308 1 337 273 31 98 chr6 39760151 39760269 -142654973 - L1MB8 LINE L1 -373 5805 5703 674 282 14 14 chr6 39760320 39760536 -142654706 - L1MB8 LINE L1 -479 5691 5476 498 153 87 153 chr6 39760561 39760680 -142654562 - L1MC5 LINE L1 -997 6964 6839 1930 136 7 17 chr6 39760680 39760974 -142654268 - AluSx SINE Alu -21 291 1 498 153 87 153 chr6 39760974 39761025 -142654217 - L1MC5 LINE L1 -1122 6839 6786 2268 65 44 3 chr6 39761025 39761319 -142653923 + AluY SINE Alu 1 306 -5 498 153 87 153 chr6 39761319 39761401 -142653841 - L1MC5 LINE L1 -1175 6786 6728 2821 147 19 30 chr6 39761415 39761698 -142653544 - L1MB7 LINE L1 -16 6168 5893 2407 103 3 0 chr6 39761698 39762010 -142653232 - AluSq SINE Alu 0 313 1 2821 147 19 30 chr6 39762010 39762297 -142652945 - L1MB7 LINE L1 -291 5893 5604 2253 108 0 22 chr6 39762297 39762611 -142652631 - AluSx SINE Alu -5 307 1 2310 109 0 7 chr6 39762626 39762930 -142652312 - AluJb SINE Alu -10 302 1 240 292 33 58 chr6 39762993 39763113 -142652129 - MIR3 SINE MIR -31 177 61 2505 80 3 13 chr6 39763260 39763573 -142651669 - AluSp SINE Alu -3 310 1 354 219 44 44 chr6 39763678 39763792 -142651450 + MER103 DNA DNA 4 117 -49 3427 144 8 14 chr6 39763798 39764417 -142650825 + L1MC1 LINE L1 5719 6333 0 265 292 169 27 chr6 39764417 39764718 -142650524 - L2 LINE L2 -134 3179 2836 24 53 0 0 chr6 39764812 39764850 -142650392 + AT_rich Low_complexity Low_complexity 1 38 0 326 117 0 50 chr6 39764850 39764910 -142650332 - HY4 scRNA scRNA 0 93 37 480 279 333 13 chr6 39764910 39765739 -142649503 - L2 LINE L2 -611 2703 1610 245 289 211 0 chr6 39765951 39766065 -142649177 - MIR SINE MIR -73 189 52 196 211 19 0 chr6 39766155 39766207 -142649035 - MIR SINE MIR -77 131 79 182 182 0 0 chr6 39766439 39766472 -142648770 + MER5B DNA MER1_type 7 39 -139 1828 163 0 14 chr6 39766509 39766797 -142648445 + AluJb SINE Alu 1 284 -28 727 276 104 0 chr6 39766848 39767098 -142648144 - L1ME3 LINE L1 -86 6076 5801 1119 256 91 22 chr6 39767102 39767465 -142647777 - LTR16A LTR ERVL -4 446 59 286 298 24 56 chr6 39767713 39767921 -142647321 - MERVL LTR ERVL -228 5257 5059 389 355 27 11 chr6 39768170 39768356 -142646886 - MERVL LTR ERVL -926 4838 4650 697 92 0 0 chr6 39768385 39768483 -142646759 - AluJ/FLAM SINE Alu -213 99 2 1076 129 84 44 chr6 39768486 39768523 -142646719 - L1MA8 LINE L1 0 6291 6257 2143 123 0 10 chr6 39768523 39768823 -142646419 + AluJb SINE Alu 1 297 -15 1076 129 84 44 chr6 39768823 39769010 -142646232 - L1MA8 LINE L1 -34 6257 6058 2186 285 90 21 chr6 39769149 39769705 -142645537 - HERV16 LTR ERVL -2763 2233 1717 1546 157 3 70 chr6 39769705 39769991 -142645251 - AluJo SINE Alu -45 267 1 2186 285 90 21 chr6 39769991 39770526 -142644716 - HERV16 LTR ERVL -3279 1717 1044 429 298 64 57 chr6 39770654 39771043 -142644199 - HERV16 LTR ERVL -4450 546 155 1586 124 75 26 chr6 39771198 39771230 -142644012 - L1P4 LINE L1 -355 5811 5782 2533 88 0 0 chr6 39771230 39771536 -142643706 - AluSq SINE Alu -7 306 1 1586 124 75 26 chr6 39771536 39771809 -142643433 - L1P4 LINE L1 -384 5782 5491 1130 137 0 58 chr6 39771810 39772000 -142643242 - AluSg/x SINE Alu 0 310 132 2457 88 7 0 chr6 39772000 39772306 -142642936 - AluSp SINE Alu -5 308 1 1023 191 40 1 chr6 39772306 39772570 -142642672 + L1PA16 LINE L1 5858 6161 0 549 263 184 34 chr6 39772587 39772862 -142642380 - LTR16A LTR ERVL -96 357 54 1049 267 52 6 chr6 39772907 39773233 -142642009 - L1ME LINE L1 -366 5796 5456 275 267 125 51 chr6 39773571 39773747 -142641495 - MIR SINE MIR -47 215 27 516 203 0 77 chr6 39773992 39774063 -142641179 - MER5A DNA MER1_type -53 136 80 1794 171 24 3 chr6 39774063 39774361 -142640881 - AluJo SINE Alu -8 304 1 516 203 0 77 chr6 39774361 39774432 -142640810 - MER5A DNA MER1_type -109 80 5 199 293 69 86 chr6 39775019 39775078 -142640164 + MER5A DNA MER1_type 75 133 -56 2445 90 0 0 chr6 39775078 39775377 -142639865 - AluSx SINE Alu -13 299 1 199 293 69 86 chr6 39775377 39775433 -142639809 + MER5A DNA MER1_type 133 188 -1 221 218 89 69 chr6 39776282 39776383 -142638859 + MIR3 SINE MIR 106 208 0 361 268 58 29 chr6 39776418 39776556 -142638686 + MIR SINE MIR 24 165 -97 2148 101 7 20 chr6 39776566 39776872 -142638370 - AluSx SINE Alu -10 302 1 559 230 22 7 chr6 39776921 39777056 -142638186 - MIR SINE MIR 0 262 126 335 205 60 0 chr6 39777558 39777641 -142637601 - MER5B DNA MER1_type 0 178 91 2282 93 0 0 chr6 39777657 39777984 -142637258 - AluSc SINE Alu 0 327 1 606 215 0 7 chr6 39777984 39778119 -142637123 - L1ME LINE L1 -814 5332 5199 1997 159 7 3 chr6 39778140 39778442 -142636800 + AluJb SINE Alu 1 303 -9 1995 154 44 29 chr6 39778458 39778509 -142636733 + L1M4 LINE L1 4924 4973 -1207 2972 126 41 54 chr6 39778509 39779043 -142636199 - MER1A DNA MER1_type 0 527 1 1995 154 44 29 chr6 39779043 39779136 -142636106 + L1M4 LINE L1 4973 5063 -1117 2271 117 0 7 chr6 39779136 39779445 -142635797 + AluSx SINE Alu 1 307 -5 1995 154 44 29 chr6 39779445 39779880 -142635362 + L1M4 LINE L1 5063 5501 -679 278 167 42 0 chr6 39779880 39779928 -142635314 + MER57A LTR ERV1 295 344 -59 444 179 12 3 chr6 39779937 39780034 -142635208 + L1M4 LINE L1 5478 5573 -595 5117 93 17 14 chr6 39780034 39780799 -142634443 - Tigger1 DNA MER2_type -1086 1332 566 335 163 0 8 chr6 39780814 39780878 -142634364 - Alu SINE Alu -250 53 1 283 237 69 69 chr6 39780977 39781108 -142634134 - MIR3 SINE MIR -30 178 48 229 238 79 0 chr6 39781293 39781356 -142633886 + MER5A DNA MER1_type 6 73 -116 2253 107 3 10 chr6 39781374 39781682 -142633560 + AluSg SINE Alu 1 306 -4 516 280 117 57 chr6 39781896 39782085 -142633157 + MLT1H1 LTR MaLR 184 360 -195 2536 66 0 3 chr6 39782085 39782390 -142632852 - AluY SINE Alu -7 304 1 516 280 117 57 chr6 39782390 39782550 -142632692 + MLT1H1 LTR MaLR 360 554 -1 330 260 31 10 chr6 39782551 39782647 -142632595 + MER5A DNA MER1_type 92 189 0 1354 145 0 26 chr6 39782696 39782923 -142632319 + AluJo SINE Alu 92 312 0 465 254 98 71 chr6 39783366 39783590 -142631652 - L1ME2 LINE L1 -1 6163 5932 * 2822 127 38 75 chr6 39783588 39783700 -142631542 - L1MDa LINE L1 -4137 2403 2288 189 107 0 0 chr6 39783700 39783728 -142631514 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 2822 127 38 75 chr6 39783728 39783871 -142631371 - L1MDa LINE L1 -4252 2288 2141 225 0 0 0 chr6 39783871 39783896 -142631346 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr6 39783895 39783916 -142631326 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2822 127 38 75 chr6 39783896 39783916 -142631326 - L1MDa LINE L1 -4399 2141 2122 2198 108 3 0 chr6 39783916 39784204 -142631038 - AluSq SINE Alu -13 300 12 2822 127 38 75 chr6 39784204 39784601 -142630641 - L1MDa LINE L1 -4418 2122 1773 207 0 0 0 chr6 39784603 39784626 -142630616 + (TTA)n Simple_repeat Simple_repeat 2 24 0 933 165 78 73 chr6 39784631 39784837 -142630405 - AluJo SINE Alu -20 292 86 4709 192 140 60 chr6 39784837 39785256 -142629986 - L1MDa LINE L1 -4760 1780 1396 2040 133 7 10 chr6 39785256 39785556 -142629686 - AluSx SINE Alu -13 299 1 4709 192 140 60 chr6 39785556 39785839 -142629403 - L1MDa LINE L1 -5144 1396 1137 1851 180 10 0 chr6 39785839 39786139 -142629103 - AluJb SINE Alu -9 303 1 4709 192 140 60 chr6 39786139 39787067 -142628175 - L1MDa LINE L1 -5403 1137 18 423 214 11 0 chr6 39787068 39787157 -142628085 - L1ME2 LINE L1 -213 5949 5860 3259 134 19 28 chr6 39787167 39787722 -142627520 - L1MB1 LINE L1 -1 6167 5609 183 42 0 0 chr6 39787722 39787746 -142627496 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2201 103 0 3 chr6 39787746 39788028 -142627214 - AluSq SINE Alu -31 282 2 3259 134 19 28 chr6 39788028 39788051 -142627191 - L1MB1 LINE L1 -557 5611 5593 924 138 0 29 chr6 39788053 39788191 -142627051 - AluJo SINE Alu -178 134 1 4439 158 27 47 chr6 39788191 39789484 -142625758 - L1MB1 LINE L1 -561 5607 4354 383 206 76 0 chr6 39789547 39789639 -142625603 - L1ME2 LINE L1 -295 5875 5777 429 250 0 24 chr6 39789680 39789804 -142625438 - L1ME2 LINE L1 -364 5798 5678 800 280 53 66 chr6 39789817 39790338 -142624904 + L2 LINE L2 2606 3133 -180 2125 113 10 3 chr6 39790338 39790631 -142624611 - AluSx SINE Alu -11 301 7 800 280 53 66 chr6 39790631 39790809 -142624433 + L2 LINE L2 3133 3312 -1 191 94 31 0 chr6 39790919 39790951 -142624291 + MER5A DNA MER1_type 43 75 -114 * 345 270 0 0 chr6 39790944 39791033 -142624209 - MER5A DNA MER1_type -80 109 21 194 227 15 45 chr6 39791017 39791083 -142624159 + MIR SINE MIR 80 143 -119 * 208 179 18 89 chr6 39791115 39791171 -142624071 + L2 LINE L2 3210 3261 -11 378 129 0 0 chr6 39791657 39791719 -142623523 + (TG)n Simple_repeat Simple_repeat 2 63 0 250 315 22 11 chr6 39792481 39792573 -142622669 + MIR SINE MIR 45 137 -71 476 273 41 0 chr6 39792654 39792775 -142622467 + L2 LINE L2 3146 3271 -1 1692 256 81 12 chr6 39796640 39797522 -142617720 + L2 LINE L2 2301 3249 -64 891 202 130 0 chr6 39798100 39798347 -142616895 - LTR16C LTR ERVL -2 489 211 348 299 108 25 chr6 39798351 39798555 -142616687 + L2 LINE L2 3079 3299 -14 633 170 101 57 chr6 39799349 39799508 -142615734 - MIR SINE MIR -90 172 7 685 231 91 20 chr6 39800105 39800304 -142614938 + MIR SINE MIR 47 259 -3 184 220 20 20 chr6 39800537 39800587 -142614655 - L2 LINE L2 -16 3256 3207 534 344 5 27 chr6 39800650 39800874 -142614368 - L2 LINE L2 0 3313 3095 515 332 127 22 chr6 39801356 39801585 -142613657 - MIR SINE MIR -1 261 9 361 303 180 0 chr6 39801596 39801774 -142613468 + MIR SINE MIR 47 256 -6 314 315 290 6 chr6 39801846 39802008 -142613234 + MIR SINE MIR 50 257 -5 735 289 36 24 chr6 39802048 39802126 -142613116 + MIR SINE MIR 6 82 -180 3161 144 40 33 chr6 39802126 39802158 -142613084 - MLT2B3 LTR ERVL 0 554 524 308 83 21 0 chr6 39802158 39802206 -142613036 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 3161 144 40 33 chr6 39802206 39802723 -142612519 - MLT2B3 LTR ERVL -30 524 1 735 289 36 24 chr6 39802723 39802897 -142612345 + MIR SINE MIR 82 261 -1 271 331 147 0 chr6 39802995 39803131 -142612111 + MIR SINE MIR 107 262 0 309 229 175 0 chr6 39803554 39803677 -142611565 - MIR SINE MIR -54 208 59 542 262 96 12 chr6 39804204 39804391 -142610851 - L1MC/D LINE L1 -435 5807 5604 219 88 0 0 chr6 39806804 39806838 -142608404 + (CGGGGG)n Simple_repeat Simple_repeat 6 39 0 1853 140 8 0 chr6 39857380 39857645 -142557597 + AluSx SINE Alu 1 267 -45 345 178 14 14 chr6 39857758 39857831 -142557411 - AluJo SINE Alu -7 295 223 945 184 39 22 chr6 39857831 39858010 -142557232 - AluJo SINE Alu -128 184 3 235 288 82 0 chr6 39858079 39858152 -142557090 + MER5B DNA MER1_type 81 159 -19 1976 124 21 0 chr6 39858183 39858465 -142556777 + AluSx SINE Alu 1 288 -24 337 113 0 0 chr6 39858681 39858743 -142556499 + Alu SINE Alu 240 301 0 227 209 97 82 chr6 39860913 39861047 -142554195 - L1ME4a LINE L1 -11 6110 5975 22 0 0 0 chr6 39861074 39861096 -142554146 + AT_rich Low_complexity Low_complexity 1 22 0 2310 68 17 10 chr6 39861100 39861394 -142553848 + AluSg SINE Alu 1 296 -14 1440 158 43 50 chr6 39861398 39861676 -142553566 + AluJb SINE Alu 30 305 -7 2187 103 3 13 chr6 39861678 39861980 -142553262 + AluSx SINE Alu 1 299 -13 2359 96 0 19 chr6 39861984 39862297 -142552945 + AluSq SINE Alu 1 307 -6 2372 107 0 3 chr6 39862300 39862608 -142552634 + AluSx SINE Alu 1 307 -5 683 180 121 137 chr6 39862611 39862755 -142552487 + AluJo SINE Alu 2 147 -155 2494 53 0 10 chr6 39862755 39863056 -142552186 + AluY SINE Alu 1 298 -13 2416 81 0 0 chr6 39863056 39863352 -142551890 + AluY SINE Alu 1 296 -15 683 180 121 137 chr6 39863352 39863512 -142551730 + AluJo SINE Alu 145 302 0 2393 75 7 13 chr6 39863842 39864150 -142551092 - AluY SINE Alu -1 310 5 2070 115 24 24 chr6 39864361 39864657 -142550585 + AluSx SINE Alu 1 296 -16 331 211 58 29 chr6 39864716 39864820 -142550422 - Charlie5 DNA MER1_type -10 2602 2496 872 200 7 7 chr6 39864824 39864974 -142550268 + FRAM SINE Alu 1 142 -34 2228 112 3 6 chr6 39865001 39865314 -142549928 + AluSx SINE Alu 1 312 0 348 148 164 23 chr6 39865322 39865416 -142549826 - Charlie5 DNA MER1_type -116 2469 2351 1646 163 83 0 chr6 39865416 39865553 -142549689 + AluJb SINE Alu 1 125 -187 2390 87 0 22 chr6 39865553 39865865 -142549377 + AluSp SINE Alu 1 305 -8 1646 163 83 0 chr6 39865865 39866003 -142549239 + AluJb SINE Alu 125 299 -13 348 148 164 23 chr6 39866003 39866036 -142549206 - Charlie5 DNA MER1_type -234 2351 2324 400 288 141 12 chr6 39866792 39866955 -142548287 + MIR SINE MIR 28 211 -51 201 247 169 0 chr6 39867115 39867192 -142548050 - MIR SINE MIR -61 147 58 561 129 35 0 chr6 39868260 39868345 -142546897 + FLAM_A SINE Alu 34 121 -21 2224 118 16 0 chr6 39868374 39868680 -142546562 - AluSx SINE Alu -1 311 1 1655 163 0 45 chr6 39869220 39869509 -142545733 + AluJb SINE Alu 1 276 -36 753 152 64 0 chr6 39869533 39869658 -142545584 + FLAM_A SINE Alu 1 133 0 830 188 0 6 chr6 39870662 39870822 -142544420 - AluJb SINE Alu -20 292 134 302 264 104 7 chr6 39870822 39870966 -142544276 + L1MEd LINE L1 1056 1213 -4906 1933 130 9 16 chr6 39870967 39871315 -142543927 - MER4A LTR ERV1 0 664 261 2172 138 0 0 chr6 39871317 39871615 -142543627 - AluSx SINE Alu -14 298 1 348 298 57 0 chr6 39871718 39871842 -142543400 + L2 LINE L2 2654 2784 -530 1504 147 108 39 chr6 39871842 39872121 -142543121 - AluSx SINE Alu -12 300 3 256 313 145 33 chr6 39872278 39872492 -142542750 - L2 LINE L2 -954 2360 2123 218 324 81 9 chr6 39872527 39872638 -142542604 + L2 LINE L2 3139 3257 -15 3816 105 0 4 chr6 39872689 39873202 -142542040 - MER9 LTR ERVK 0 511 1 310 288 181 10 chr6 39873453 39873715 -142541527 - L2 LINE L2 -236 3036 2691 1989 142 0 22 chr6 39873715 39874026 -142541216 - AluSq SINE Alu -9 304 1 1814 158 9 53 chr6 39874026 39874348 -142540894 - AluJb SINE Alu -4 308 1 216 0 0 0 chr6 39874923 39874947 -142540295 + (CA)n Simple_repeat Simple_repeat 2 25 0 1926 93 19 30 chr6 39875368 39875637 -142539605 - AluSq SINE Alu -47 266 1 308 24 24 0 chr6 39875640 39875681 -142539561 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1990 120 3 7 chr6 39875685 39875968 -142539274 - AluSx SINE Alu -30 282 1 2291 104 3 10 chr6 39876050 39876357 -142538885 - AluSp SINE Alu -8 305 1 2032 137 10 7 chr6 39876380 39876679 -142538563 - AluSx SINE Alu -8 304 5 350 271 101 47 chr6 39876682 39876811 -142538431 - L1ME3A LINE L1 -60 6110 5975 2096 210 52 34 chr6 39876929 39877247 -142537995 - L1ME1 LINE L1 -5 6161 5825 2339 110 0 0 chr6 39877247 39877556 -142537686 - AluSx SINE Alu -3 309 1 2096 210 52 34 chr6 39877556 39877832 -142537410 - L1ME1 LINE L1 -341 5825 5556 671 165 52 113 chr6 39877835 39878083 -142537159 - MER21A LTR ERV1 -3 928 696 2332 161 108 91 chr6 39878083 39878668 -142536574 - LTR12 LTR ERV1 -2 712 118 1418 188 72 60 chr6 39878671 39879117 -142536125 - pTR5 LTR ERV1 -1245 1193 743 855 126 28 28 chr6 39879117 39879260 -142535982 - MER21A LTR ERV1 -230 701 559 2766 157 47 72 chr6 39879261 39879804 -142535438 + MER4D LTR ERV1 1 525 -378 2192 121 0 0 chr6 39879804 39880102 -142535140 + AluSx SINE Alu 1 298 -14 2766 157 47 72 chr6 39880102 39880225 -142535017 + MER4D LTR ERV1 525 650 -253 2419 144 9 118 chr6 39880226 39880767 -142534475 + LTR12 LTR ERV1 1 482 -232 743 216 82 35 chr6 39880767 39880998 -142534244 + MER4D LTR ERV1 651 892 -11 231 269 0 0 chr6 39881041 39881093 -142534149 + LTR30 LTR ERV1 1 52 -670 1363 105 39 53 chr6 39881093 39881366 -142533876 + LTR12 LTR ERV1 57 2013 -425 23 0 0 0 chr6 39881401 39881424 -142533818 + GC_rich Low_complexity Low_complexity 1 23 0 242 208 31 83 chr6 39881430 39881526 -142533716 + LTR30 LTR ERV1 552 642 -80 659 131 0 0 chr6 39881529 39881628 -142533614 + LTR12 LTR ERV1 615 713 -1 1063 134 5 123 chr6 39881628 39881974 -142533268 - MER21A LTR ERV1 -431 432 126 2366 81 3 0 chr6 39881974 39882259 -142532983 - AluSg SINE Alu -24 286 1 1063 134 5 123 chr6 39882259 39882372 -142532870 - MER21A LTR ERV1 -737 126 1 284 139 0 0 chr6 39882372 39882415 -142532827 - L1ME1 LINE L1 -607 5559 5517 2111 101 7 0 chr6 39882415 39882731 -142532511 + AluSx SINE Alu 5 322 0 2235 75 0 34 chr6 39882731 39883074 -142532168 + AluY SINE Alu 1 333 0 474 132 0 0 chr6 39883097 39883173 -142532069 + (TC)n Simple_repeat Simple_repeat 1 76 0 1901 164 3 0 chr6 39883174 39883466 -142531776 - AluJb SINE Alu -19 293 1 718 185 51 10 chr6 39883474 39883669 -142531573 - L1ME1 LINE L1 -811 5335 5133 2249 100 0 0 chr6 39883688 39883967 -142531275 - AluSg SINE Alu -31 279 1 850 159 0 7 chr6 39883977 39884115 -142531127 - AluJo/FRAM SINE Alu -1 311 175 407 81 16 0 chr6 39884115 39884177 -142531065 + AluSp/q SINE Alu 241 303 -10 858 188 14 112 chr6 39884178 39884359 -142530883 - L1ME1 LINE L1 -1211 4935 4791 2254 117 10 0 chr6 39884359 39884667 -142530575 - AluSp SINE Alu -2 311 1 858 188 14 112 chr6 39884667 39884772 -142530470 - L1ME1 LINE L1 -1355 4791 4677 724 223 91 65 chr6 39884811 39884978 -142530264 + L1MD3 LINE L1 7657 7818 -177 1694 179 7 23 chr6 39884978 39885279 -142529963 + AluJb SINE Alu 1 296 -16 1853 186 0 0 chr6 39885285 39885581 -142529661 + AluJb SINE Alu 1 296 -16 2150 125 0 0 chr6 39885585 39885886 -142529356 + AluSg SINE Alu 1 301 0 724 223 91 65 chr6 39885886 39886014 -142529228 + L1MD3 LINE L1 7824 7973 -22 1857 123 56 0 chr6 39886014 39886309 -142528933 + AluSx SINE Alu 1 310 0 694 132 0 26 chr6 39886349 39886463 -142528779 + AluJo/FLAM SINE Alu 18 128 -184 2688 3 0 0 chr6 39886465 39886785 -142528457 + AluY SINE Alu 1 320 0 1675 231 21 45 chr6 39886785 39887290 -142527952 - MLT1E LTR MaLR -60 533 42 1718 242 140 35 chr6 39887369 39887645 -142527597 - L1MC5 LINE L1 -523 7438 7193 2055 112 0 85 chr6 39887645 39888011 -142527231 - AluSx SINE Alu 0 312 1 1718 242 140 35 chr6 39888011 39888370 -142526872 - L1MC5 LINE L1 -768 7193 6873 756 211 72 0 chr6 39888370 39888522 -142526720 - FRAM SINE Alu -3 163 1 1718 242 140 35 chr6 39888522 39888618 -142526624 - L1MC5 LINE L1 -1088 6873 6789 1964 118 38 14 chr6 39888618 39888906 -142526336 + AluSx SINE Alu 1 295 -17 1718 242 140 35 chr6 39888906 39888920 -142526322 - L1MC5 LINE L1 -1172 6789 6658 406 276 112 36 chr6 39889521 39889717 -142525525 - MLT1H LTR MaLR -273 276 66 2831 13 0 0 chr6 39890233 39890534 -142524708 - AluYa5 SINE Alu -10 301 1 415 236 57 57 chr6 39891171 39891328 -142523914 + MER5A DNA MER1_type 4 160 -29 739 137 38 30 chr6 39891420 39891551 -142523691 + AluJo/FLAM SINE Alu 1 132 -170 2211 106 3 0 chr6 39891553 39891872 -142523370 + AluSp SINE Alu 1 320 0 2238 117 3 0 chr6 39891875 39892175 -142523067 + AluSq SINE Alu 1 301 -12 33 25 0 0 chr6 39892175 39892215 -142523027 + AT_rich Low_complexity Low_complexity 1 40 0 424 224 37 28 chr6 39892218 39892325 -142522917 + MIR SINE MIR 97 204 -58 373 234 24 65 chr6 39892897 39893021 -142522221 - MIR SINE MIR -110 152 34 585 285 44 0 chr6 39893062 39893199 -142522043 + MIR SINE MIR 46 188 -74 2056 191 77 29 chr6 39893210 39893692 -142521550 - MLT1D LTR MaLR 0 505 1 352 267 55 0 chr6 39893736 39893836 -142521406 + MIR SINE MIR 54 155 -61 2170 123 3 0 chr6 39894174 39894484 -142520758 - AluY SINE Alu 0 311 1 1769 170 3 22 chr6 39894509 39894820 -142520422 + AluJb SINE Alu 1 305 -7 1727 172 3 7 chr6 39894854 39895139 -142520103 + AluJb SINE Alu 10 293 -19 953 177 33 0 chr6 39895139 39895320 -142519922 - L1MB5 LINE L1 -50 6124 5938 23 0 0 0 chr6 39895326 39895349 -142519893 + AT_rich Low_complexity Low_complexity 1 23 0 1702 166 7 11 chr6 39895722 39896028 -142519214 - AluSx SINE Alu 0 305 1 899 229 52 52 chr6 39896065 39896336 -142518906 + L2 LINE L2 3041 3311 -2 2433 87 0 3 chr6 39896895 39897193 -142518049 + AluSc SINE Alu 1 297 -12 790 179 0 0 chr6 39897193 39897310 -142517932 - FLAM_A SINE Alu -15 118 2 569 222 180 37 chr6 39897341 39897726 -142517516 - MLT1H LTR MaLR -7 535 93 2345 110 0 0 chr6 39897726 39898027 -142517215 - AluSx SINE Alu -11 301 1 24 67 0 0 chr6 39898036 39898081 -142517161 + AT_rich Low_complexity Low_complexity 1 45 0 2086 119 0 23 chr6 39898068 39898371 -142516871 - AluSq SINE Alu -17 296 1 275 313 76 30 chr6 39898402 39898533 -142516709 - MIR3 SINE MIR -45 163 27 3006 128 120 77 chr6 39898782 39899075 -142516167 - MER39 LTR ERV1 0 707 428 6791 118 73 40 chr6 39899075 39900312 -142514930 + MER52C LTR ERV1 1 1278 0 3006 128 120 77 chr6 39900312 39900691 -142514551 - MER39 LTR ERV1 -279 428 6 258 330 11 0 chr6 39900796 39900884 -142514358 + MIR SINE MIR 33 121 -87 1845 177 0 0 chr6 39901211 39901517 -142513725 + AluSx SINE Alu 1 306 0 256 130 65 0 chr6 39901747 39901793 -142513449 + MIR SINE MIR 114 162 -100 659 261 0 13 chr6 39901867 39902020 -142513222 + MIR SINE MIR 15 165 -97 2482 84 3 0 chr6 39902055 39902351 -142512891 + AluSp SINE Alu 1 297 -16 518 248 9 18 chr6 39902842 39902985 -142512257 + MIR SINE MIR 14 142 -66 2397 103 0 0 chr6 39903402 39903703 -142511539 + AluSg SINE Alu 1 301 -9 187 100 25 25 chr6 39903804 39903844 -142511398 + (GA)n Simple_repeat Simple_repeat 2 41 0 414 0 0 0 chr6 39903971 39904017 -142511225 + (TG)n Simple_repeat Simple_repeat 2 47 0 2027 148 0 13 chr6 39904548 39904853 -142510389 + AluJo SINE Alu 1 301 -11 269 230 90 30 chr6 39904933 39905033 -142510209 - MIR SINE MIR 0 262 157 288 0 0 0 chr6 39905038 39905070 -142510172 + (CAT)n Simple_repeat Simple_repeat 1 32 0 336 315 63 9 chr6 39905121 39905232 -142510010 - MIR SINE MIR -92 170 54 199 333 14 0 chr6 39905210 39905279 -142509963 - MIR SINE MIR -73 135 66 * 197 306 0 47 chr6 39905573 39905658 -142509584 + L2 LINE L2 3005 3085 -187 336 287 35 65 chr6 39906058 39906095 -142509147 + L2 LINE L2 3077 3114 -199 2488 59 10 0 chr6 39906095 39906402 -142508840 - AluY SINE Alu -1 310 1 336 287 35 65 chr6 39906402 39906450 -142508792 + L2 LINE L2 3114 3162 -151 2428 57 4 0 chr6 39906450 39906773 -142508469 + AluSp SINE Alu 1 324 0 336 287 35 65 chr6 39906773 39906915 -142508327 + L2 LINE L2 3162 3299 -14 221 300 167 42 chr6 39908719 39908982 -142506260 + L2 LINE L2 2977 3272 0 2572 72 3 0 chr6 39909110 39909414 -142505828 - AluSp SINE Alu -8 305 1 195 69 0 0 chr6 39909969 39909998 -142505244 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 273 281 120 52 chr6 39910079 39910428 -142504814 + L2 LINE L2 2851 3223 -49 377 247 173 37 chr6 39911050 39911321 -142503921 - LTR16A LTR ERVL -89 361 54 2403 68 4 0 chr6 39911732 39912035 -142503207 - AluSg1 SINE Alu 0 304 1 1178 142 71 5 chr6 39912076 39912273 -142502969 - AluJo SINE Alu -16 296 87 632 178 0 89 chr6 39912318 39912490 -142502752 - MER53 DNA DNA -3 186 33 2425 96 0 6 chr6 39912490 39912804 -142502438 - AluSq SINE Alu -1 312 1 632 178 0 89 chr6 39912804 39912833 -142502409 - MER53 DNA DNA -156 33 3 1903 85 0 4 chr6 39913610 39913857 -142501385 + AluSg SINE Alu 64 309 -1 724 185 159 15 chr6 39914445 39914640 -142500602 - MIR SINE MIR -31 231 9 245 311 19 0 chr6 39915159 39915265 -142499977 + MIR SINE MIR 30 137 -71 238 283 35 18 chr6 39915280 39915393 -142499849 - L1MC5 LINE L1 -36 7925 7811 1380 212 44 21 chr6 39915394 39915781 -142499461 - L1MC5 LINE L1 -232 7729 7334 1125 244 142 22 chr6 39915782 39916064 -142499178 + L2 LINE L2 2474 2721 -592 2301 118 3 0 chr6 39916064 39916368 -142498874 + AluSx SINE Alu 1 305 -7 1125 244 142 22 chr6 39916368 39916748 -142498494 + L2 LINE L2 2721 3224 -89 26 0 0 0 chr6 39916856 39916882 -142498360 + AT_rich Low_complexity Low_complexity 1 26 0 391 213 13 0 chr6 39916925 39917000 -142498242 - LTR16A1 LTR ERVL 0 457 382 759 240 30 70 chr6 39917034 39917305 -142497937 - LTR16A1 LTR ERVL -171 286 27 375 269 0 90 chr6 39917338 39917494 -142497748 - MIR SINE MIR -74 188 47 246 313 62 9 chr6 39917572 39917684 -142497558 - L2 LINE L2 -9 3304 3187 204 224 20 20 chr6 39917757 39917806 -142497436 - L2 LINE L2 -11 3302 3254 257 250 17 69 chr6 39917826 39917942 -142497300 - MIR SINE MIR -117 145 36 900 110 0 22 chr6 39918765 39918977 -142496265 + FLAM_C SINE Alu 1 209 0 475 247 76 36 chr6 39919171 39919294 -142495948 - L1MC5 LINE L1 -797 7164 7047 1962 156 0 13 chr6 39919294 39919609 -142495633 - AluJo SINE Alu -1 311 1 2281 109 0 3 chr6 39919611 39919915 -142495327 - AluSg SINE Alu -7 303 1 2456 100 0 0 chr6 39919917 39920227 -142495015 - AluSg SINE Alu 0 310 1 475 247 76 36 chr6 39920227 39920320 -142494922 - L1MC5 LINE L1 -914 7047 6933 1595 178 108 46 chr6 39920339 39920756 -142494486 - MSTB2 LTR MaLR 0 457 15 1688 159 29 63 chr6 39920995 39921310 -142493932 - AluJb SINE Alu -6 306 3 2335 119 0 0 chr6 39921370 39921681 -142493561 - AluSx SINE Alu 0 312 2 337 273 31 98 chr6 39921698 39921773 -142493469 - L1MB8 LINE L1 -295 5883 5805 2057 162 0 3 chr6 39921773 39922082 -142493160 - AluJb SINE Alu -4 308 1 337 273 31 98 chr6 39922082 39922200 -142493042 - L1MB8 LINE L1 -373 5805 5703 674 282 14 14 chr6 39922251 39922467 -142492775 - L1MB8 LINE L1 -479 5691 5476 498 153 87 153 chr6 39922492 39922611 -142492631 - L1MC5 LINE L1 -997 6964 6839 1974 136 3 17 chr6 39922611 39922906 -142492336 - AluSx SINE Alu -21 291 1 498 153 87 153 chr6 39922906 39922957 -142492285 - L1MC5 LINE L1 -1122 6839 6786 2268 65 44 3 chr6 39922957 39923251 -142491991 + AluY SINE Alu 1 306 -5 498 153 87 153 chr6 39923251 39923333 -142491909 - L1MC5 LINE L1 -1175 6786 6728 2821 147 19 30 chr6 39923347 39923630 -142491612 - L1MB7 LINE L1 -16 6168 5893 2407 103 3 0 chr6 39923630 39923942 -142491300 - AluSq SINE Alu 0 313 1 2821 147 19 30 chr6 39923942 39924229 -142491013 - L1MB7 LINE L1 -291 5893 5604 2253 108 0 22 chr6 39924229 39924543 -142490699 - AluSx SINE Alu -5 307 1 2310 109 0 7 chr6 39924558 39924862 -142490380 - AluJb SINE Alu -10 302 1 240 292 33 58 chr6 39924925 39925045 -142490197 - MIR3 SINE MIR -31 177 61 2505 80 3 13 chr6 39925192 39925505 -142489737 - AluSp SINE Alu -3 310 1 354 219 44 44 chr6 39925610 39925724 -142489518 + MER103 DNA DNA 4 117 -49 3427 144 8 14 chr6 39925730 39926349 -142488893 + L1MC1 LINE L1 5719 6333 0 265 292 169 27 chr6 39926349 39926650 -142488592 - L2 LINE L2 -134 3179 2836 24 53 0 0 chr6 39926744 39926782 -142488460 + AT_rich Low_complexity Low_complexity 1 38 0 326 117 0 50 chr6 39926782 39926842 -142488400 - HY4 scRNA scRNA 0 93 37 480 279 333 13 chr6 39926842 39927671 -142487571 - L2 LINE L2 -611 2703 1610 245 289 211 0 chr6 39927883 39927997 -142487245 - MIR SINE MIR -73 189 52 196 211 19 0 chr6 39928087 39928139 -142487103 - MIR SINE MIR -77 131 79 182 182 0 0 chr6 39928371 39928404 -142486838 + MER5B DNA MER1_type 7 39 -139 1828 163 0 14 chr6 39928441 39928729 -142486513 + AluJb SINE Alu 1 284 -28 727 276 104 0 chr6 39928780 39929030 -142486212 - L1ME3 LINE L1 -86 6076 5801 1119 256 91 22 chr6 39929034 39929397 -142485845 - LTR16A LTR ERVL -4 446 59 286 298 24 56 chr6 39929645 39929853 -142485389 - MERVL LTR ERVL -228 5257 5059 389 355 27 11 chr6 39930102 39930288 -142484954 - MERVL LTR ERVL -926 4838 4650 697 92 0 0 chr6 39930317 39930415 -142484827 - AluJ/FLAM SINE Alu -213 99 2 1076 129 84 44 chr6 39930418 39930455 -142484787 - L1MA8 LINE L1 0 6291 6257 2143 123 0 10 chr6 39930455 39930755 -142484487 + AluJb SINE Alu 1 297 -15 1076 129 84 44 chr6 39930755 39930942 -142484300 - L1MA8 LINE L1 -34 6257 6058 2186 285 90 21 chr6 39931081 39931637 -142483605 - HERV16 LTR ERVL -2763 2233 1717 1546 157 3 70 chr6 39931637 39931923 -142483319 - AluJo SINE Alu -45 267 1 2186 285 90 21 chr6 39931923 39932458 -142482784 - HERV16 LTR ERVL -3279 1717 1044 429 298 64 57 chr6 39932586 39932975 -142482267 - HERV16 LTR ERVL -4450 546 155 1586 124 75 26 chr6 39933130 39933162 -142482080 - L1P4 LINE L1 -355 5811 5782 2533 88 0 0 chr6 39933162 39933468 -142481774 - AluSq SINE Alu -7 306 1 1586 124 75 26 chr6 39933468 39933741 -142481501 - L1P4 LINE L1 -384 5782 5491 1130 137 0 58 chr6 39933742 39933932 -142481310 - AluSg/x SINE Alu 0 310 132 2457 88 7 0 chr6 39933932 39934238 -142481004 - AluSp SINE Alu -5 308 1 1023 191 40 1 chr6 39934238 39934502 -142480740 + L1PA16 LINE L1 5858 6161 0 549 263 184 34 chr6 39934519 39934794 -142480448 - LTR16A LTR ERVL -96 357 54 1049 267 52 6 chr6 39934839 39935165 -142480077 - L1ME LINE L1 -366 5796 5456 275 267 125 51 chr6 39935503 39935679 -142479563 - MIR SINE MIR -47 215 27 516 203 0 77 chr6 39935924 39935995 -142479247 - MER5A DNA MER1_type -53 136 80 1794 171 24 3 chr6 39935995 39936293 -142478949 - AluJo SINE Alu -8 304 1 516 203 0 77 chr6 39936293 39936364 -142478878 - MER5A DNA MER1_type -109 80 5 199 293 69 86 chr6 39936951 39937010 -142478232 + MER5A DNA MER1_type 75 133 -56 2445 90 0 0 chr6 39937010 39937309 -142477933 - AluSx SINE Alu -13 299 1 199 293 69 86 chr6 39937309 39937365 -142477877 + MER5A DNA MER1_type 133 188 -1 221 218 89 69 chr6 39938214 39938315 -142476927 + MIR3 SINE MIR 106 208 0 361 268 58 29 chr6 39938350 39938488 -142476754 + MIR SINE MIR 24 165 -97 2148 101 7 20 chr6 39938498 39938804 -142476438 - AluSx SINE Alu -10 302 1 559 230 22 7 chr6 39938853 39938988 -142476254 - MIR SINE MIR 0 262 126 335 205 60 0 chr6 39939490 39939573 -142475669 - MER5B DNA MER1_type 0 178 91 2282 93 0 0 chr6 39939589 39939916 -142475326 - AluSc SINE Alu 0 327 1 606 215 0 7 chr6 39939916 39940051 -142475191 - L1ME LINE L1 -814 5332 5199 1997 159 7 3 chr6 39940072 39940374 -142474868 + AluJb SINE Alu 1 303 -9 1995 154 44 29 chr6 39940390 39940441 -142474801 + L1M4 LINE L1 4924 4973 -1207 2972 126 41 54 chr6 39940441 39940975 -142474267 - MER1A DNA MER1_type 0 527 1 1995 154 44 29 chr6 39940975 39941068 -142474174 + L1M4 LINE L1 4973 5063 -1117 2271 117 0 7 chr6 39941068 39941377 -142473865 + AluSx SINE Alu 1 307 -5 1995 154 44 29 chr6 39941377 39941812 -142473430 + L1M4 LINE L1 5063 5501 -679 278 167 42 0 chr6 39941812 39941860 -142473382 + MER57A LTR ERV1 295 344 -59 444 179 12 3 chr6 39941869 39941966 -142473276 + L1M4 LINE L1 5478 5573 -595 5117 93 17 14 chr6 39941966 39942731 -142472511 - Tigger1 DNA MER2_type -1086 1332 566 335 163 0 8 chr6 39942746 39942810 -142472432 - Alu SINE Alu -249 53 1 283 237 69 69 chr6 39942909 39943040 -142472202 - MIR3 SINE MIR -30 178 48 229 238 79 0 chr6 39943225 39943288 -142471954 + MER5A DNA MER1_type 6 73 -116 2253 107 3 10 chr6 39943306 39943614 -142471628 + AluSg SINE Alu 1 306 -4 516 280 117 57 chr6 39943828 39944017 -142471225 + MLT1H1 LTR MaLR 184 360 -195 2536 66 0 3 chr6 39944017 39944322 -142470920 - AluY SINE Alu -7 304 1 516 280 117 57 chr6 39944322 39944482 -142470760 + MLT1H1 LTR MaLR 360 554 -1 330 260 31 10 chr6 39944483 39944579 -142470663 + MER5A DNA MER1_type 92 189 0 1354 145 0 26 chr6 39944628 39944855 -142470387 + AluJo SINE Alu 92 312 0 465 254 98 71 chr6 39945298 39945522 -142469720 - L1ME2 LINE L1 -1 6163 5932 * 2822 127 38 75 chr6 39945520 39945632 -142469610 - L1MDa LINE L1 -4137 2403 2288 189 107 0 0 chr6 39945632 39945660 -142469582 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 2822 127 38 75 chr6 39945660 39945803 -142469439 - L1MDa LINE L1 -4252 2288 2141 225 0 0 0 chr6 39945803 39945828 -142469414 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr6 39945827 39945848 -142469394 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 2822 127 38 75 chr6 39945828 39945848 -142469394 - L1MDa LINE L1 -4399 2141 2122 2198 108 3 0 chr6 39945848 39946136 -142469106 - AluSq SINE Alu -13 300 12 2822 127 38 75 chr6 39946136 39946533 -142468709 - L1MDa LINE L1 -4418 2122 1773 207 0 0 0 chr6 39946535 39946558 -142468684 + (TTA)n Simple_repeat Simple_repeat 2 24 0 933 165 78 73 chr6 39946563 39946769 -142468473 - AluJo SINE Alu -20 292 86 4237 199 137 64 chr6 39946769 39947188 -142468054 - L1MDa LINE L1 -4760 1780 1393 2040 133 7 10 chr6 39947188 39947488 -142467754 - AluSx SINE Alu -13 299 1 4237 199 137 64 chr6 39947488 39947771 -142467471 - L1MDa LINE L1 -5147 1393 1132 1851 180 10 0 chr6 39947771 39948071 -142467171 - AluJb SINE Alu -9 303 1 4237 199 137 64 chr6 39948071 39948999 -142466243 - L1MDa LINE L1 -5408 1132 18 397 214 11 0 chr6 39949000 39949089 -142466153 - L1ME2 LINE L1 -213 5949 5860 3523 134 19 28 chr6 39949099 39949654 -142465588 - L1MB1 LINE L1 -1 6167 5609 183 42 0 0 chr6 39949654 39949678 -142465564 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2100 103 0 3 chr6 39949678 39949960 -142465282 - AluSq SINE Alu -31 282 2 3523 134 19 28 chr6 39949960 39949983 -142465259 - L1MB1 LINE L1 -557 5611 5593 877 138 0 29 chr6 39949985 39950123 -142465119 - AluJo SINE Alu -178 134 1 4111 159 27 47 chr6 39950123 39951416 -142463826 - L1MB1 LINE L1 -561 5607 4354 359 206 76 0 chr6 39951479 39951571 -142463671 - L1ME2 LINE L1 -295 5875 5777 413 250 0 24 chr6 39951612 39951736 -142463506 - L1ME2 LINE L1 -364 5798 5678 863 284 52 66 chr6 39951747 39952270 -142462972 + L2 LINE L2 2605 3133 -180 2030 113 10 3 chr6 39952270 39952563 -142462679 - AluSx SINE Alu -11 301 7 863 284 52 66 chr6 39952563 39952741 -142462501 + L2 LINE L2 3133 3312 -1 193 94 31 0 chr6 39952851 39952883 -142462359 + MER5A DNA MER1_type 43 75 -114 * 375 270 0 0 chr6 39952876 39952965 -142462277 - MER5A DNA MER1_type -80 109 21 232 280 231 28 chr6 39952949 39953092 -142462150 + MIR SINE MIR 80 251 -11 * 378 129 0 0 chr6 39953589 39953651 -142461591 + (TG)n Simple_repeat Simple_repeat 2 63 0 277 312 18 46 chr6 39954396 39954505 -142460737 + MIR SINE MIR 32 137 -71 501 267 42 0 chr6 39954587 39954707 -142460535 + L2 LINE L2 3188 3312 -1 201 311 74 41 chr6 39955832 39955954 -142459288 + MIR SINE MIR 59 184 -78 1692 256 81 12 chr6 39958572 39959454 -142455788 + L2 LINE L2 2301 3249 -64 891 202 130 0 chr6 39960032 39960279 -142454963 - LTR16C LTR ERVL -2 489 211 348 299 108 25 chr6 39960283 39960487 -142454755 + L2 LINE L2 3079 3299 -14 633 170 101 57 chr6 39961281 39961440 -142453802 - MIR SINE MIR -90 172 7 685 231 91 20 chr6 39962037 39962236 -142453006 + MIR SINE MIR 47 259 -3 184 220 20 20 chr6 39962469 39962519 -142452723 - L2 LINE L2 -16 3256 3207 534 344 5 27 chr6 39962582 39962806 -142452436 - L2 LINE L2 0 3313 3095 515 332 127 22 chr6 39963288 39963517 -142451725 - MIR SINE MIR -1 261 9 361 303 180 0 chr6 39963528 39963706 -142451536 + MIR SINE MIR 47 256 -6 314 315 290 6 chr6 39963778 39963940 -142451302 + MIR SINE MIR 50 257 -5 735 289 36 24 chr6 39963980 39964058 -142451184 + MIR SINE MIR 6 82 -180 3161 144 40 33 chr6 39964058 39964090 -142451152 - MLT2B3 LTR ERVL 0 554 524 308 83 21 0 chr6 39964090 39964138 -142451104 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 3161 144 40 33 chr6 39964138 39964655 -142450587 - MLT2B3 LTR ERVL -30 524 1 735 289 36 24 chr6 39964655 39964829 -142450413 + MIR SINE MIR 82 261 -1 271 331 147 0 chr6 39964927 39965063 -142450179 + MIR SINE MIR 107 262 0 309 229 175 0 chr6 39965486 39965609 -142449633 - MIR SINE MIR -54 208 59 542 262 96 12 chr6 39966136 39966323 -142448919 - L1MC/D LINE L1 -435 5807 5604 219 88 0 0 chr6 39968736 39968770 -142446472 + (CGGGGG)n Simple_repeat Simple_repeat 6 39 0 835 217 99 11 chr6 39969248 39969513 -142445729 - L1MC3 LINE L1 0 8042 7692 245 267 53 0 chr6 39969550 39969625 -142445617 - L1MC4 LINE L1 -365 7677 7599 275 321 95 7 chr6 39969641 39969778 -142445464 + L2 LINE L2 3162 3310 -3 293 306 119 68 chr6 39969811 39970180 -142445062 - L2 LINE L2 -9 3263 2876 2299 107 31 6 chr6 39972290 39972617 -142442625 - MER1B DNA MER1_type 0 337 3 847 225 97 18 chr6 39972671 39972898 -142442344 - MIR SINE MIR -15 247 3 182 278 167 22 chr6 39977426 39977516 -142437726 + MIR SINE MIR 41 143 -65 569 232 103 0 chr6 39978580 39978735 -142436507 + MIR SINE MIR 21 191 -71 271 206 27 14 chr6 39979211 39979284 -142435958 + L2 LINE L2 2991 3064 -208 226 237 79 13 chr6 39981300 39981376 -142433866 - MIR3 SINE MIR -7 201 121 1836 161 7 3 chr6 39981574 39981879 -142433363 + AluJb SINE Alu 1 306 -6 268 309 66 28 chr6 39981929 39982110 -142433132 + L1MC4a LINE L1 5888 6075 -1733 206 236 0 0 chr6 39982179 39982234 -142433008 + A-rich Low_complexity Low_complexity 1 55 0 271 283 0 50 chr6 39983134 39983233 -142432009 - MIR3 SINE MIR -3 205 112 322 333 49 0 chr6 39984032 39984155 -142431087 + L2 LINE L2 3158 3286 -27 2089 105 10 3 chr6 39984172 39984467 -142430775 + AluSx SINE Alu 11 307 -5 2474 54 3 13 chr6 39984467 39984781 -142430461 + AluY SINE Alu 1 311 0 837 230 104 142 chr6 39984806 39985327 -142429915 - L2 LINE L2 -6 3307 2807 200 229 229 0 chr6 39986352 39986413 -142428829 - MIR SINE MIR -70 192 118 2005 105 14 20 chr6 39987189 39987484 -142427758 + AluSq SINE Alu 7 299 -14 728 271 44 0 chr6 39987653 39987834 -142427408 + MER5A DNA MER1_type 1 189 0 206 286 104 0 chr6 39987835 39987912 -142427330 + L3b LINE CR1 1493 1577 -6 453 272 210 6 chr6 39988067 39988229 -142427013 - MER91A DNA MER1_type -1 195 1 1833 150 35 3 chr6 39988936 39989222 -142426020 - AluJb SINE Alu -17 295 1 250 298 0 0 chr6 39989223 39989280 -142425962 - MIR SINE MIR -102 160 104 250 279 2 0 chr6 39989729 39989794 -142425448 - MIR SINE MIR -54 154 88 241 292 192 8 chr6 39990075 39990195 -142425047 - MIR3 SINE MIR -15 193 52 250 283 111 10 chr6 39990457 39990556 -142424686 - MIR SINE MIR -76 132 24 244 318 140 9 chr6 39992985 39993092 -142422150 + MIR3 SINE MIR 88 208 0 352 299 51 13 chr6 39995011 39995168 -142420074 + MIR SINE MIR 51 213 -49 245 271 0 60 chr6 39995222 39995355 -142419887 + GA-rich Low_complexity Low_complexity 2 126 0 209 313 16 0 chr6 39995521 39995585 -142419657 + L2 LINE L2 2990 3054 -218 236 315 41 0 chr6 39995595 39995668 -142419574 - MIR3 SINE MIR -50 158 83 394 196 20 0 chr6 39996599 39996701 -142418541 + (CA)n Simple_repeat Simple_repeat 2 105 0 192 152 0 0 chr6 39998043 39998076 -142417166 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 295 228 55 79 chr6 39998176 39998303 -142416939 - L2 LINE L2 -128 3144 3021 2212 98 24 3 chr6 39999366 39999653 -142415589 + AluSq SINE Alu 1 293 -20 943 154 0 0 chr6 39999727 39999870 -142415372 - FLAM_C SINE Alu 0 143 1 1294 201 115 59 chr6 39999870 40000243 -142414999 + MLT1J LTR MaLR 61 454 -57 185 262 0 0 chr6 40000671 40000713 -142414529 + MIR SINE MIR 59 100 -162 319 283 48 51 chr6 40000872 40000916 -142414326 - MIR SINE MIR -63 145 102 2123 119 51 0 chr6 40000916 40001211 -142414031 - AluSx SINE Alu 0 312 3 319 283 48 51 chr6 40001211 40001332 -142413910 - MIR SINE MIR -106 102 24 259 350 8 16 chr6 40001574 40001697 -142413545 + MLT1K LTR MaLR 219 340 -248 258 280 30 11 chr6 40002116 40002254 -142412988 + MIR SINE MIR 16 152 -68 186 274 118 49 chr6 40002696 40002798 -142412444 - MIR SINE MIR -119 143 35 211 298 186 0 chr6 40002805 40002929 -142412313 - MIR SINE MIR -60 202 56 444 337 60 16 chr6 40003862 40004114 -142411128 - L2 LINE L2 -101 3212 2950 390 295 111 46 chr6 40004213 40004430 -142410812 - MIR SINE MIR -24 238 8 612 233 95 57 chr6 40005182 40005440 -142409802 - L2 LINE L2 -2 3311 3039 2008 88 19 88 chr6 40005440 40005758 -142409484 - AluSx SINE Alu -10 302 7 612 233 95 57 chr6 40005758 40005795 -142409447 - L2 LINE L2 -274 3039 3005 326 314 54 32 chr6 40005822 40006007 -142409235 - MIR3 SINE MIR 0 208 20 529 246 154 10 chr6 40006709 40006904 -142408338 + MIR SINE MIR 20 242 -20 277 264 22 11 chr6 40007176 40007267 -142407975 - MIR SINE MIR -57 205 114 1491 160 103 18 chr6 40007677 40007959 -142407283 + AluJo SINE Alu 1 306 -6 197 178 22 0 chr6 40007959 40008004 -142407238 + GA-rich Low_complexity Low_complexity 1 46 0 2170 123 0 0 chr6 40008040 40008356 -142406886 + AluSx SINE Alu 1 316 0 186 43 0 0 chr6 40008816 40008839 -142406403 + (CA)n Simple_repeat Simple_repeat 2 24 0 292 258 108 0 chr6 40009286 40009379 -142405863 - L2 LINE L2 -14 3299 3197 2456 74 0 16 chr6 40009398 40009708 -142405534 - AluSx SINE Alu -7 305 1 201 323 146 0 chr6 40010316 40010412 -142404830 - MIR3 SINE MIR -87 121 12 318 250 60 17 chr6 40010825 40010941 -142404301 - MIR3 SINE MIR -7 201 81 1007 202 20 28 chr6 40010958 40011205 -142404037 - MIR SINE MIR -16 246 2 679 215 90 20 chr6 40011328 40011528 -142403714 - MIR SINE MIR -13 249 36 955 221 84 39 chr6 40011955 40012240 -142403002 - AluJo SINE Alu 0 302 5 239 299 175 22 chr6 40012525 40012662 -142402580 + MIR SINE MIR 84 241 -21 1954 83 132 0 chr6 40012712 40012977 -142402265 - AluSg SINE Alu -10 300 1 273 301 66 22 chr6 40013151 40013287 -142401955 + MIR3 SINE MIR 35 176 -32 352 280 56 28 chr6 40013408 40013551 -142401691 - MIR SINE MIR -50 212 66 248 246 108 0 chr6 40013915 40013980 -142401262 - MIR SINE MIR -80 182 111 209 211 0 0 chr6 40014296 40014334 -142400908 - MIR SINE MIR -111 151 114 352 246 51 42 chr6 40014550 40014668 -142400574 - MIR SINE MIR -74 188 70 2443 50 40 7 chr6 40014729 40015029 -142400213 + AluY SINE Alu 1 310 -1 244 263 95 32 chr6 40015461 40015556 -142399686 - MIR SINE MIR -90 172 72 209 274 27 0 chr6 40015678 40015751 -142399491 + MIR SINE MIR 84 158 -104 200 263 0 0 chr6 40016007 40016066 -142399176 + MIR SINE MIR 91 132 -76 302 270 61 26 chr6 40016929 40017044 -142398198 + L2 LINE L2 3109 3227 -45 2195 120 13 0 chr6 40017319 40017619 -142397623 - AluSx SINE Alu -8 304 1 1864 172 3 0 chr6 40018426 40018722 -142396520 - AluJo SINE Alu -15 297 1 374 252 99 32 chr6 40018745 40019044 -142396198 + MLT1J LTR MaLR 115 507 -4 2673 62 0 0 chr6 40019061 40019370 -142395872 + AluY SINE Alu 1 309 -2 2297 112 0 3 chr6 40019730 40020042 -142395200 + AluSx SINE Alu 1 311 -1 265 337 51 0 chr6 40020308 40020406 -142394836 - MIR3 SINE MIR -54 154 52 532 234 14 14 chr6 40020457 40020602 -142394640 + L2 LINE L2 2935 3079 -234 704 179 0 0 chr6 40020602 40020719 -142394523 + AluJo/FLAM SINE Alu 1 117 -195 2353 106 0 10 chr6 40020720 40021031 -142394211 - AluSx SINE Alu -4 308 1 374 266 206 42 chr6 40021065 40021279 -142393963 + L2 LINE L2 3065 3313 0 526 204 15 8 chr6 40021637 40021769 -142393473 + ALR/Alpha Satellite centromeric 36 168 -4 585 303 16 0 chr6 40022010 40022195 -142393047 + L1ME3 LINE L1 5968 6155 -7 1646 163 16 39 chr6 40023469 40023775 -142391467 + AluJb SINE Alu 1 299 -13 2538 51 3 0 chr6 40024013 40024306 -142390936 - AluY SINE Alu -15 296 3 514 296 77 15 chr6 40024780 40024989 -142390253 - MIR SINE MIR 0 262 43 1557 247 159 35 chr6 40025868 40026806 -142388436 + L2 LINE L2 2171 3312 -1 250 254 16 0 chr6 40026965 40027028 -142388214 + L2 LINE L2 2998 3061 -252 321 187 93 13 chr6 40027510 40027585 -142387657 + MER5A DNA MER1_type 26 106 -83 187 263 0 0 chr6 40028702 40028740 -142386502 + MIR SINE MIR 112 149 -59 316 286 88 23 chr6 40032593 40032764 -142382478 - MIR SINE MIR -3 259 78 1627 196 0 24 chr6 40032764 40033055 -142382187 + AluJb SINE Alu 1 284 -28 2306 80 35 0 chr6 40033055 40033344 -142381898 - AluY SINE Alu -12 299 1 222 309 98 24 chr6 40033753 40033876 -142381366 - MIR SINE MIR -8 254 123 255 159 0 0 chr6 40034095 40034139 -142381103 + MADE1 DNA Mariner 1 44 -36 26 0 0 0 chr6 40034139 40034165 -142381077 + AT_rich Low_complexity Low_complexity 1 26 0 305 77 0 0 chr6 40034177 40034216 -142381026 - Alu SINE Alu -261 39 1 * 349 105 0 18 chr6 40034216 40034269 -142380973 + MADE1 DNA Mariner 29 80 0 1512 196 17 34 chr6 40034448 40034744 -142380498 + AluJo SINE Alu 2 292 -20 22 0 0 0 chr6 40034767 40034789 -142380453 + AT_rich Low_complexity Low_complexity 1 22 0 586 162 50 0 chr6 40036477 40036576 -142378666 - AluJb SINE Alu -207 105 2 612 94 0 0 chr6 40037839 40037924 -142377318 - AluSg/x SINE Alu -38 274 190 1802 122 16 4 chr6 40037924 40038169 -142377073 - AluSq SINE Alu -65 248 1 232 185 46 0 chr6 40038470 40038578 -142376664 + (TCCA)n Simple_repeat Simple_repeat 2 114 0 229 280 121 55 chr6 40040673 40040855 -142374387 + MIR SINE MIR 14 207 -55 2629 259 66 11 chr6 40040905 40040931 -142374311 + L2 LINE L2 2135 2158 -1156 782 186 8 103 chr6 40040931 40041173 -142374069 + MER20 DNA MER1_type 1 219 0 2629 259 66 11 chr6 40041173 40041945 -142373297 + L2 LINE L2 2158 2977 -337 457 291 82 48 chr6 40042430 40042636 -142372606 + MIR SINE MIR 2 214 -48 311 226 57 65 chr6 40042640 40042764 -142372478 + HAL1 LINE L1 2385 2507 0 224 200 60 0 chr6 40042776 40042826 -142372416 + MIR SINE MIR 204 256 -6 1155 74 0 0 chr6 40044786 40044921 -142370321 + AluSq/x SINE Alu 1 135 -177 1993 116 4 4 chr6 40044923 40045199 -142370043 + AluYa5 SINE Alu 16 291 -20 199 267 17 17 chr6 40045300 40045360 -142369882 + L2 LINE L2 3119 3178 -94 2481 83 3 0 chr6 40046580 40046892 -142368350 + AluSq SINE Alu 1 313 0 2242 134 0 3 chr6 40046901 40047214 -142368028 + AluSx SINE Alu 1 312 0 244 229 0 43 chr6 40048671 40048741 -142366501 - MER5A DNA MER1_type -88 101 35 197 333 0 13 chr6 40048688 40048763 -142366479 + MER5A DNA MER1_type 115 188 -1 * 356 221 177 0 chr6 40048903 40049016 -142366226 + MER94 DNA DNA 1 133 -1 2573 147 97 57 chr6 40049118 40049381 -142365861 - MER7C DNA MER2_type -2426 602 351 1682 188 0 3 chr6 40049381 40049663 -142365579 + AluJo SINE Alu 17 297 -15 1996 144 37 0 chr6 40049667 40049965 -142365277 + AluSx SINE Alu 1 309 -3 2573 147 97 57 chr6 40049965 40050274 -142364968 - MER7C DNA MER2_type -2679 349 2 2099 140 0 3 chr6 40050762 40051055 -142364187 + AluSx SINE Alu 1 292 -20 266 146 0 0 chr6 40051140 40051181 -142364061 + Alu SINE Alu 251 291 -11 2526 70 0 10 chr6 40051432 40051746 -142363496 + AluY SINE Alu 1 311 0 349 235 227 25 chr6 40052049 40052168 -142363074 - MER46A DNA MER2_type -90 146 4 * 1168 151 21 0 chr6 40052168 40052259 -142362983 + MER46A DNA MER2_type 142 236 0 688 200 0 0 chr6 40052485 40052595 -142362647 + FLAM_C SINE Alu 2 111 -32 234 91 0 0 chr6 40052597 40052630 -142362612 + (CCCCCT)n Simple_repeat Simple_repeat 5 37 0 847 138 22 36 chr6 40052658 40052796 -142362446 - FLAM_C SINE Alu -1 142 7 296 294 59 25 chr6 40053275 40053394 -142361848 - MIR3 SINE MIR -41 167 45 1455 175 58 55 chr6 40053687 40053995 -142361247 + AluJb SINE Alu 1 309 -3 235 324 14 0 chr6 40054004 40054075 -142361167 - MIR3 SINE MIR -13 195 124 1722 174 0 24 chr6 40054180 40054316 -142360926 + AluSx SINE Alu 1 139 -173 2527 60 0 3 chr6 40054316 40054617 -142360625 + AluY SINE Alu 1 300 -11 1722 174 0 24 chr6 40054617 40054808 -142360434 + AluSx SINE Alu 139 312 0 3762 206 89 102 chr6 40055061 40055696 -142359546 + L1MC3 LINE L1 6350 6991 -794 2300 99 0 0 chr6 40055696 40056000 -142359242 + AluY SINE Alu 1 304 -7 3762 206 89 102 chr6 40056000 40056157 -142359085 + L1MC3 LINE L1 6991 7148 -637 338 156 18 128 chr6 40056157 40056266 -142358976 + MLT1F1 LTR MaLR 35 131 -436 3762 206 89 102 chr6 40056266 40056799 -142358443 + L1MC3 LINE L1 7148 7766 -19 2225 119 0 0 chr6 40056869 40057172 -142358070 + AluSx SINE Alu 1 303 -9 736 208 25 0 chr6 40059730 40059889 -142355353 + LTR65 LTR ERV1 1 163 -506 386 268 34 48 chr6 40060018 40060231 -142355011 + LTR65 LTR ERV1 396 649 -17 1015 266 45 34 chr6 40060415 40060772 -142354470 - L2 LINE L2 -1226 2088 1728 443 256 150 58 chr6 40060786 40060918 -142354324 + L1MC4a LINE L1 5705 5823 -1985 1678 151 17 34 chr6 40060918 40061210 -142354032 - AluJo SINE Alu -25 287 1 443 256 150 58 chr6 40061210 40061264 -142353978 + L1MC4a LINE L1 5823 5871 -1937 2313 95 20 0 chr6 40061264 40061559 -142353683 + AluSx SINE Alu 1 301 -11 443 256 150 58 chr6 40061559 40061804 -142353438 + L1MC4a LINE L1 5871 6177 -1631 200 211 0 0 chr6 40061845 40061883 -142353359 + L2 LINE L2 3214 3251 -21 28 38 0 19 chr6 40062092 40062112 -142353130 + AT_rich Low_complexity Low_complexity 1 20 -32 1307 224 43 11 chr6 40062112 40062389 -142352853 + AluJo SINE Alu 2 287 -25 28 38 0 19 chr6 40062389 40062421 -142352821 + AT_rich Low_complexity Low_complexity 20 52 0 469 291 91 19 chr6 40062744 40062954 -142352288 + L1MC5 LINE L1 6995 7219 -742 4589 155 78 39 chr6 40063056 40063132 -142352110 + L1MB3 LINE L1 4663 4735 -1448 2065 105 3 14 chr6 40063132 40063427 -142351815 + AluSx SINE Alu 1 292 -20 4589 155 78 39 chr6 40063427 40064807 -142350435 + L1MB3 LINE L1 4735 6178 -5 2185 111 20 0 chr6 40065389 40065687 -142349555 - AluSx SINE Alu -8 304 1 2088 122 6 31 chr6 40065870 40066189 -142349053 - AluSq SINE Alu -2 311 1 2391 82 0 7 chr6 40067402 40067705 -142347537 - AluY SINE Alu -10 301 1 1635 200 0 17 chr6 40067729 40068029 -142347213 - AluJb SINE Alu -14 298 4 3923 151 70 21 chr6 40068034 40068281 -142346961 - L1MC1 LINE L1 -11 6322 6088 2276 96 3 0 chr6 40068281 40068572 -142346670 + AluSg SINE Alu 1 292 -18 3923 151 70 21 chr6 40068572 40069260 -142345982 - L1MC1 LINE L1 -245 6088 5324 2210 112 3 0 chr6 40069260 40069556 -142345686 - AluSp SINE Alu -14 299 3 2066 127 0 42 chr6 40069568 40069876 -142345366 - AluSx SINE Alu -17 295 1 2353 60 0 30 chr6 40069885 40070187 -142345055 - AluY SINE Alu -18 293 1 1494 242 32 27 chr6 40070189 40070389 -142344853 - L1M4 LINE L1 -2366 3780 3582 1602 186 41 0 chr6 40070389 40070680 -142344562 + AluJb SINE Alu 1 303 -9 1494 242 32 27 chr6 40070680 40070921 -142344321 - L1M4 LINE L1 -2564 3582 3337 681 170 10 0 chr6 40070922 40071022 -142344220 - AluJ/FLAM SINE Alu -210 102 2 2096 114 71 8 chr6 40071022 40071390 -142343852 - L1MCa LINE L1 -4827 1599 1209 3110 163 54 2 chr6 40071390 40071892 -142343350 - MER44D DNA MER2_type 0 605 23 2245 101 3 0 chr6 40071940 40072236 -142343006 - AluSc SINE Alu -12 297 1 803 203 0 0 chr6 40072241 40072369 -142342873 - FLAM_A SINE Alu -5 128 1 2371 154 68 8 chr6 40072370 40072884 -142342358 - L1MCa LINE L1 -5221 1205 631 2080 128 0 3 chr6 40072887 40073184 -142342058 - AluSx SINE Alu -16 296 1 995 233 54 0 chr6 40073221 40073467 -142341775 + L1MB5 LINE L1 5908 6174 0 367 276 125 61 chr6 40073500 40073714 -142341528 + L1ME4a LINE L1 5789 6031 -90 2267 112 0 0 chr6 40073714 40074010 -142341232 + AluSx SINE Alu 1 296 -16 367 276 125 61 chr6 40074010 40074106 -142341136 + L1ME4a LINE L1 6031 6119 -2 1737 82 141 37 chr6 40074109 40074378 -142340864 - AluSc SINE Alu -12 297 1 2274 199 61 21 chr6 40074452 40075108 -142340134 + L1MCa LINE L1 2365 3039 -3387 1070 164 5 32 chr6 40075130 40075319 -142339923 + AluJo SINE Alu 7 190 -122 219 186 0 0 chr6 40075340 40075383 -142339859 + A-rich Low_complexity Low_complexity 1 43 0 503 130 0 11 chr6 40075384 40075476 -142339766 + (GGGA)n Simple_repeat Simple_repeat 4 94 0 370 156 0 0 chr6 40075476 40075540 -142339702 + L1MCa LINE L1 3046 3109 -3317 731 167 16 16 chr6 40075543 40075669 -142339573 + AluJo SINE Alu 11 136 -176 1830 201 115 66 chr6 40075709 40076437 -142338805 + L1MCa LINE L1 3121 3884 -2542 356 145 0 72 chr6 40076472 40076541 -142338701 + Charlie5 DNA MER1_type 1 64 -2548 293 89 54 0 chr6 40076543 40076599 -142338643 + Charlie5 DNA MER1_type 2428 2486 -126 1752 167 7 13 chr6 40076803 40077102 -142338140 + AluJb SINE Alu 1 297 -15 309 109 0 0 chr6 40077102 40077148 -142338094 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 2059 126 3 26 chr6 40077168 40077477 -142337765 - AluSx SINE Alu -10 302 1 1268 199 63 24 chr6 40077531 40077818 -142337424 + AluJo SINE Alu 1 298 -14 1941 135 0 3 chr6 40079386 40079743 -142335499 - AluSx SINE Alu 0 356 1 1889 125 57 27 chr6 40079987 40080283 -142334959 + AluJb SINE Alu 1 305 -7 259 271 299 9 chr6 40081396 40081503 -142333739 + MIR SINE MIR 103 240 -22 283 248 171 47 chr6 40081689 40081818 -142333424 + MER20B DNA MER1_type 45 189 -594 2303 79 4 0 chr6 40081986 40082265 -142332977 + AluSc SINE Alu 1 280 -29 288 77 0 0 chr6 40082265 40082304 -142332938 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2359 102 0 0 chr6 40082354 40082657 -142332585 + AluSg SINE Alu 1 303 -7 229 292 323 0 chr6 40082721 40082817 -142332425 - MIR SINE MIR -133 129 3 7858 124 33 32 chr6 40083428 40084262 -142330980 + HSMAR2 DNA Mariner 13 845 -457 1686 150 37 17 chr6 40084262 40084556 -142330686 + AluJo SINE Alu 1 300 -12 7858 124 33 32 chr6 40084556 40084569 -142330673 + HSMAR2 DNA Mariner 845 856 -446 2266 103 0 10 chr6 40084569 40084870 -142330372 + AluSq SINE Alu 1 298 -15 7858 124 33 32 chr6 40084870 40085256 -142329986 + HSMAR2 DNA Mariner 856 1251 -51 2129 120 3 3 chr6 40085256 40085557 -142329685 - AluSx SINE Alu -11 301 1 7858 124 33 32 chr6 40085557 40085609 -142329633 + HSMAR2 DNA Mariner 1251 1301 -1 1909 158 10 0 chr6 40086923 40087226 -142328016 - AluJo SINE Alu -5 307 2 486 317 163 29 chr6 40087272 40087786 -142327456 - L2 LINE L2 -1022 2292 1710 1816 131 0 19 chr6 40089151 40089418 -142325824 - AluSg SINE Alu -48 262 1 1058 103 0 0 chr6 40089418 40089554 -142325688 - AluSq/x SINE Alu -177 136 1 270 136 0 0 chr6 40090323 40090367 -142324875 + (CA)n Simple_repeat Simple_repeat 2 45 0 279 228 158 30 chr6 40091318 40091419 -142323823 + L2 LINE L2 3199 3312 -1 1861 89 13 80 chr6 40091949 40092310 -142322932 - AluSx SINE Alu 0 341 1 39 0 0 0 chr6 40093283 40093322 -142321920 + AT_rich Low_complexity Low_complexity 1 39 0 2279 106 7 3 chr6 40093345 40093647 -142321595 - AluSx SINE Alu -9 303 1 1455 177 104 24 chr6 40094429 40094717 -142320525 + AluJo SINE Alu 1 311 -1 1983 138 23 7 chr6 40094774 40095079 -142320163 - AluSx SINE Alu -2 310 1 692 148 0 57 chr6 40095136 40095258 -142319984 - FLAM_C SINE Alu 0 143 29 1571 152 16 8 chr6 40095295 40095545 -142319697 + AluJo SINE Alu 50 301 -11 28 48 0 0 chr6 40096675 40096717 -142318525 + AT_rich Low_complexity Low_complexity 1 42 0 750 147 0 0 chr6 40096729 40096831 -142318411 - FLAM_C SINE Alu -40 103 2 1400 246 147 17 chr6 40096921 40097506 -142317736 - L1MC4a LINE L1 -1788 6020 5360 2252 89 3 13 chr6 40097508 40097811 -142317431 + AluSg SINE Alu 1 300 -10 1977 136 17 14 chr6 40099623 40099918 -142315324 + AluSx SINE Alu 2 297 -15 693 124 35 0 chr6 40099918 40100031 -142315211 + L1MB3 LINE L1 6063 6179 -4 228 67 0 0 chr6 40100034 40100064 -142315178 + (T)n Simple_repeat Simple_repeat 1 30 0 2135 116 0 3 chr6 40100080 40100374 -142314868 + AluSx SINE Alu 1 293 -19 306 269 71 43 chr6 40100392 40100533 -142314709 + MIR SINE MIR 62 206 -56 449 192 32 72 chr6 40100548 40100673 -142314569 - L2 LINE L2 -2 3311 3192 311 244 33 12 chr6 40100874 40100965 -142314277 - MIR3 SINE MIR -53 155 63 2353 83 13 0 chr6 40101174 40101476 -142313766 - AluSx SINE Alu -6 306 1 1698 164 13 20 chr6 40101573 40101878 -142313364 + AluJb SINE Alu 1 303 -9 627 239 95 14 chr6 40102761 40102983 -142312259 + L1MC4 LINE L1 7779 8018 -24 2724 39 0 0 chr6 40103399 40103710 -142311532 + AluY SINE Alu 1 311 0 1531 55 0 0 chr6 40103710 40103891 -142311351 + AluY SINE Alu 131 311 0 1472 163 54 11 chr6 40103935 40104212 -142311030 + L1MB2 LINE L1 5620 5908 -275 710 153 47 82 chr6 40104217 40104350 -142310892 + L1MB2 LINE L1 5997 6124 -47 1569 159 13 68 chr6 40104350 40104658 -142310584 + AluJb SINE Alu 1 291 -21 710 153 47 82 chr6 40104658 40104694 -142310548 + L1MB2 LINE L1 6124 6160 -11 1716 178 0 4 chr6 40104708 40104989 -142310253 + AluJo SINE Alu 14 293 -19 761 130 65 0 chr6 40105091 40105199 -142310043 - FLAM_C SINE Alu -28 115 1 694 178 7 53 chr6 40105207 40105359 -142309883 - L1MB7 LINE L1 -2 6182 6038 1433 226 119 5 chr6 40105361 40105782 -142309460 + MLT1D LTR MaLR 37 505 0 815 165 0 0 chr6 40105903 40106024 -142309218 - FLAM_A SINE Alu -11 122 2 1420 151 11 151 chr6 40106518 40106728 -142308514 - AluJo SINE Alu 0 302 159 1419 156 80 33 chr6 40106728 40107004 -142308238 + AluJo SINE Alu 1 289 -23 1420 151 11 151 chr6 40107004 40107143 -142308099 - AluJo SINE Alu -143 159 2 814 178 0 0 chr6 40107166 40107284 -142307958 - FLAM_C SINE Alu -15 118 1 21 0 0 0 chr6 40107503 40107524 -142307718 + AT_rich Low_complexity Low_complexity 1 21 0 2339 64 3 17 chr6 40107833 40108131 -142307111 + AluSp SINE Alu 1 294 -19 1913 244 108 23 chr6 40108957 40109685 -142305557 + L1MC4 LINE L1 7113 7902 -140 1041 221 27 16 chr6 40109702 40109960 -142305282 + L1MB7 LINE L1 5519 5779 -387 921 139 15 0 chr6 40110233 40110370 -142304872 - FRAM SINE Alu -14 162 24 2216 103 3 3 chr6 40110397 40110687 -142304555 - AluSq SINE Alu -10 303 14 1848 158 7 17 chr6 40110687 40110984 -142304258 - AluJb SINE Alu -18 294 1 1381 213 59 42 chr6 40111290 40111472 -142303770 + L1MB7 LINE L1 5759 5936 -248 2379 88 0 3 chr6 40111472 40111768 -142303474 - AluSq SINE Alu -18 295 1 1381 213 59 42 chr6 40111768 40111989 -142303253 + L1MB7 LINE L1 5936 6169 -15 348 265 34 0 chr6 40111996 40112113 -142303129 + L1MC4 LINE L1 7922 8042 0 2106 114 36 16 chr6 40112124 40112430 -142302812 + AluSx SINE Alu 1 312 0 1530 152 83 0 chr6 40112700 40112964 -142302278 + AluJb SINE Alu 21 306 -6 585 240 77 16 chr6 40113297 40113480 -142301762 + HAL1 LINE L1 92 285 -2222 1824 140 54 4 chr6 40113665 40113944 -142301298 - AluSx SINE Alu -19 293 1 846 120 16 16 chr6 40113989 40114114 -142301128 + FLAM_C SINE Alu 1 125 -8 1376 226 98 34 chr6 40114118 40114761 -142300481 + HAL1 LINE L1 822 1695 -812 796 254 130 30 chr6 40114764 40115134 -142300108 + HAL1 LINE L1 1744 2150 -357 1090 178 199 0 chr6 40115142 40115373 -142299869 + AluJb SINE Alu 11 287 -25 258 32 0 0 chr6 40115383 40115414 -142299828 + (CA)n Simple_repeat Simple_repeat 1 31 0 312 27 0 0 chr6 40115455 40115492 -142299750 + (CA)n Simple_repeat Simple_repeat 1 37 0 339 236 162 68 chr6 40115558 40115592 -142299650 - MIR SINE MIR -21 241 212 2383 79 3 0 chr6 40115592 40115882 -142299360 - AluSx SINE Alu -21 291 1 339 236 162 68 chr6 40115882 40115995 -142299247 - MIR SINE MIR -50 212 80 408 251 169 26 chr6 40116038 40116269 -142298973 + HAL1 LINE L1 2244 2507 0 747 152 7 43 chr6 40116334 40116472 -142298770 + AluJb SINE Alu 1 133 -179 2093 134 0 6 chr6 40116554 40116868 -142298374 + AluSx SINE Alu 1 312 0 282 243 97 20 chr6 40117287 40117537 -142297705 + L1ME LINE L1 5265 5535 -629 1469 181 44 4 chr6 40117683 40117954 -142297288 + AluJb SINE Alu 1 282 -30 329 82 33 0 chr6 40117982 40118043 -142297199 + (CTAG)n Simple_repeat Simple_repeat 1 63 0 1019 153 0 0 chr6 40118068 40118225 -142297017 - AluJb SINE Alu -22 290 134 477 223 36 0 chr6 40118421 40118533 -142296709 + L1ME LINE L1 5546 5661 -460 22 0 0 0 chr6 40118550 40118572 -142296670 + AT_rich Low_complexity Low_complexity 1 22 0 2102 139 0 0 chr6 40118580 40118874 -142296368 + AluSx SINE Alu 1 294 -18 1851 178 7 0 chr6 40119222 40119525 -142295717 + AluJb SINE Alu 1 305 -7 2245 87 10 10 chr6 40119598 40119896 -142295346 - AluSx SINE Alu -14 298 1 875 99 0 57 chr6 40119904 40120045 -142295197 - L1PA15 LINE L1 -1 6164 6032 2292 53 60 27 chr6 40120121 40120422 -142294820 + AluY SINE Alu 1 311 0 1130 90 36 36 chr6 40120551 40120717 -142294525 + L1PA15 LINE L1 6000 6165 0 649 246 122 67 chr6 40120727 40121187 -142294055 + L1ME4a LINE L1 5414 5898 -223 1844 201 73 18 chr6 40121197 40121636 -142293606 + MLT1C LTR MaLR 5 467 0 525 290 110 10 chr6 40121644 40121844 -142293398 + MIR SINE MIR 23 242 -20 301 272 26 0 chr6 40121903 40122017 -142293225 + L1ME4a LINE L1 5984 6100 -21 1912 106 95 0 chr6 40122021 40122294 -142292948 - AluSx SINE Alu -13 299 1 30 27 0 0 chr6 40122294 40122331 -142292911 + AT_rich Low_complexity Low_complexity 1 37 0 555 126 39 19 chr6 40122369 40122472 -142292770 - MER50 LTR ERV1 -131 603 499 23 54 0 0 chr6 40122482 40122519 -142292723 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr6 40122604 40122650 -142292592 + AT_rich Low_complexity Low_complexity 1 46 0 868 128 7 28 chr6 40123039 40123180 -142292062 + FLAM_C SINE Alu 3 140 -3 2147 89 6 71 chr6 40123401 40123727 -142291515 - AluSg SINE Alu -5 305 1 1720 173 0 14 chr6 40123734 40123807 -142291435 - AluJo SINE Alu -26 286 214 2495 56 7 3 chr6 40123807 40124113 -142291129 - AluY SINE Alu -4 307 1 1720 173 0 14 chr6 40124113 40124328 -142290914 - AluJo SINE Alu -98 214 2 539 204 0 10 chr6 40124353 40124456 -142290786 + U13 snRNA snRNA 1 102 -2 727 207 0 0 chr6 40124486 40124602 -142290640 + AluJo SINE Alu 85 200 -112 313 279 0 0 chr6 40124677 40124763 -142290479 + L1MC4 LINE L1 6618 6703 -1339 1008 102 0 0 chr6 40124942 40125089 -142290153 + (TA)n Simple_repeat Simple_repeat 2 148 0 984 222 108 56 chr6 40125215 40125336 -142289906 + MER102b DNA MER1_type 1 114 -1314 1578 140 16 76 chr6 40125336 40125651 -142289591 + AluJo SINE Alu 1 296 -16 984 222 108 56 chr6 40125651 40125853 -142289389 + MER102b DNA MER1_type 114 341 0 226 260 41 41 chr6 40126051 40126124 -142289118 - L2 LINE L2 -3 3269 3197 23 0 0 0 chr6 40126865 40126888 -142288354 + AT_rich Low_complexity Low_complexity 1 23 0 2116 119 42 10 chr6 40126888 40127198 -142288044 - 7SLRNA srpRNA srpRNA 0 320 1 1499 173 25 85 chr6 40127416 40127774 -142287468 + L1M4 LINE L1 4945 5272 -874 2459 57 3 3 chr6 40127774 40128071 -142287171 + AluY SINE Alu 1 297 -14 1499 173 25 85 chr6 40128071 40128157 -142287085 + L1M4 LINE L1 5272 5362 -784 1803 32 55 0 chr6 40128242 40128459 -142286783 + AluY SINE Alu 1 229 -82 1939 190 18 87 chr6 40128794 40128969 -142286273 + L1MB5 LINE L1 5317 5502 -672 2143 108 3 10 chr6 40128969 40129264 -142285978 + AluSx SINE Alu 1 293 -19 191 61 30 0 chr6 40129264 40129297 -142285945 + (TA)n Simple_repeat Simple_repeat 2 35 0 1939 190 18 87 chr6 40129297 40129688 -142285554 + L1MB5 LINE L1 5501 5819 -355 1770 163 7 0 chr6 40129688 40129976 -142285266 + AluJb SINE Alu 11 300 -12 1939 190 18 87 chr6 40129976 40130042 -142285200 + L1MB5 LINE L1 5819 5888 -286 1994 124 0 0 chr6 40130086 40130351 -142284891 + AluSx SINE Alu 1 265 -47 931 112 0 0 chr6 40130408 40130533 -142284709 + AluSp/q SINE Alu 175 299 -14 1039 195 24 14 chr6 40130533 40130743 -142284499 + L1MB5 LINE L1 5931 6142 -32 960 195 18 12 chr6 40130743 40130907 -142284335 + FAM SINE Alu 1 165 -10 24 53 0 0 chr6 40130907 40130945 -142284297 + AT_rich Low_complexity Low_complexity 1 38 0 300 67 19 240 chr6 40131688 40131734 -142283508 + L1MB3 LINE L1 6101 6155 -28 2184 113 0 0 chr6 40131734 40132025 -142283217 + AluSx SINE Alu 1 291 -21 216 0 0 0 chr6 40132029 40132053 -142283189 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 300 67 19 240 chr6 40132053 40132105 -142283137 + L1MB3 LINE L1 6158 6181 -2 325 375 112 15 chr6 40132263 40132486 -142282756 + L3b LINE CR1 1279 1534 -49 2109 69 0 15 chr6 40132486 40132748 -142282494 - AluY SINE Alu -53 258 1 325 375 112 15 chr6 40132748 40132793 -142282449 + L3b LINE CR1 1534 1573 -10 2229 104 0 3 chr6 40133073 40133370 -142281872 + AluSx SINE Alu 1 296 -16 650 200 0 0 chr6 40133521 40133631 -142281611 - AluJb SINE Alu -9 303 194 724 164 0 0 chr6 40184215 40184337 -142230905 + FRAM SINE Alu 55 176 0 403 273 10 108 chr6 40185977 40186171 -142229071 - MIR3 SINE MIR -4 204 30 363 270 0 0 chr6 40186602 40186691 -142228551 + L1MC4 LINE L1 6615 6703 -1339 326 311 0 0 chr6 40186635 40186725 -142228517 - L1MC4 LINE L1 -1339 6703 6614 * 459 174 0 0 chr6 40186725 40186811 -142228431 + (TG)n Simple_repeat Simple_repeat 2 87 0 2483 62 0 0 chr6 40189750 40190038 -142225204 - AluY SINE Alu -23 288 1 839 173 268 0 chr6 40190066 40190234 -142225008 - MER58A DNA MER1_type -11 213 1 2258 138 28 0 chr6 40192082 40192438 -142222804 + MER47A DNA MER2_type 1 366 0 2245 106 0 13 chr6 40194259 40194562 -142220680 + AluSg SINE Alu 1 299 -11 1723 101 0 0 chr6 40198490 40198708 -142216534 - AluSx SINE Alu -94 218 1 2462 202 32 35 chr6 40198710 40199121 -142216121 - L1MDa LINE L1 -2958 3582 3172 1981 103 65 34 chr6 40199121 40199413 -142215829 - AluSx SINE Alu -11 301 1 2462 202 32 35 chr6 40199413 40199665 -142215577 - L1MDa LINE L1 -3368 3172 2921 854 203 30 25 chr6 40199665 40199862 -142215380 - MLT1B LTR MaLR 0 390 193 3242 64 44 33 chr6 40199974 40200293 -142214949 + LTR22A LTR ERVK 1 328 -130 2122 138 0 7 chr6 40200293 40200598 -142214644 + AluSg SINE Alu 1 303 -7 3242 64 44 33 chr6 40200598 40200731 -142214511 + LTR22A LTR ERVK 328 458 0 7799 113 53 7 chr6 40200731 40201889 -142213353 + HERVK22 LTR ERVK 1 1211 -5626 948 44 0 0 chr6 40201891 40202005 -142213237 - LTR22A LTR ERVK -341 117 4 579 160 110 0 chr6 40202008 40202108 -142213134 - MLT1B LTR MaLR -279 111 1 743 196 45 15 chr6 40202109 40202308 -142212934 - L1MDa LINE L1 -3616 2924 2720 806 144 0 144 chr6 40202308 40202495 -142212747 + FRAM SINE Alu 1 158 -18 4201 151 62 26 chr6 40202499 40202633 -142212609 - L1MDa LINE L1 -3817 2723 2595 1924 157 0 0 chr6 40202633 40202932 -142212310 - AluSx SINE Alu -13 299 1 4201 151 62 26 chr6 40202932 40203488 -142211754 - L1MDa LINE L1 -3945 2595 2061 2074 120 0 26 chr6 40203488 40203797 -142211445 + AluSx SINE Alu 3 303 -9 4201 151 62 26 chr6 40203797 40204125 -142211117 - L1MDa LINE L1 -4479 2061 1660 2434 121 59 48 chr6 40204125 40204294 -142210948 - MER65A LTR ERV1 0 445 279 1795 167 6 6 chr6 40204294 40204606 -142210636 + AluJo SINE Alu 1 312 0 2434 121 59 48 chr6 40204606 40204876 -142210366 - MER65A LTR ERV1 -166 279 1 4201 151 62 26 chr6 40204876 40204889 -142210353 - L1MDa LINE L1 -4880 1660 1649 1781 202 25 53 chr6 40204889 40205364 -142209878 - HUERS-P1 LTR ERV1 -13 4858 4397 1292 236 88 86 chr6 40205331 40205780 -142209462 - HUERS-P1 LTR ERV1 -779 4092 3645 * 2043 112 7 10 chr6 40205780 40205949 -142209293 - AluY SINE Alu -7 304 135 2115 91 14 0 chr6 40205949 40206245 -142208997 - AluSq SINE Alu -13 300 1 2043 112 7 10 chr6 40206245 40206380 -142208862 - AluY SINE Alu -176 135 1 1877 138 10 3 chr6 40206380 40206671 -142208571 - AluJo SINE Alu -19 293 1 1292 236 88 86 chr6 40206671 40206707 -142208535 - HUERS-P1 LTR ERV1 -1225 3646 3605 258 209 0 0 chr6 40206784 40206844 -142208398 - HUERS-P1 LTR ERV1 -728 5535 3325 2208 98 3 0 chr6 40206849 40207146 -142208096 + AluSq SINE Alu 1 298 -15 1968 209 121 82 chr6 40207186 40207490 -142207752 - MER65A-int LTR ERV1 -1237 5094 4803 2035 116 20 0 chr6 40207490 40207784 -142207458 + AluSx SINE Alu 3 302 -10 1968 209 121 82 chr6 40207784 40208573 -142206669 - MER65A-int LTR ERV1 -1528 4803 3959 8325 186 83 80 chr6 40208578 40208608 -142206634 - MER65A-int LTR ERV1 -2363 2508 2480 1831 181 0 7 chr6 40208608 40208918 -142206324 - AluJb SINE Alu -4 308 1 8325 186 83 80 chr6 40208918 40209344 -142205898 - MER65A-int LTR ERV1 -2391 2480 2057 745 185 15 0 chr6 40209344 40209474 -142205768 + FLAM_A SINE Alu 1 132 -1 8325 186 83 80 chr6 40209474 40210652 -142204590 - MER65A-int LTR ERV1 -2814 2057 1198 2005 107 0 0 chr6 40210652 40210922 -142204320 - AluSx SINE Alu -17 295 26 8325 186 83 80 chr6 40210922 40212113 -142203129 - MER65A-int LTR ERV1 -3673 1198 12 2162 127 45 45 chr6 40212120 40212546 -142202696 - MER65A LTR ERV1 0 445 20 1861 137 55 0 chr6 40212562 40212883 -142202359 - AluSx SINE Alu 0 337 1 2021 169 146 156 chr6 40212908 40213000 -142202242 - L1MDa LINE L1 -4869 1671 1580 1906 149 3 16 chr6 40213000 40213315 -142201927 - AluJo SINE Alu -1 311 1 2021 169 146 156 chr6 40213315 40213715 -142201527 - L1MDa LINE L1 -4960 1580 1178 1065 154 0 6 chr6 40213715 40213890 -142201352 - AluSg/x SINE Alu -11 301 128 2021 169 146 156 chr6 40213890 40214472 -142200770 - L1MDa LINE L1 -5362 1178 255 290 213 16 0 chr6 40214476 40214537 -142200705 - L1MDa LINE L1 -6451 89 28 263 349 22 44 chr6 40214615 40214930 -142200312 - L1M4 LINE L1 -947 5199 4892 217 385 60 0 chr6 40215675 40215792 -142199450 + MIR SINE MIR 23 146 -62 295 270 127 8 chr6 40222931 40223057 -142192185 - MIR SINE MIR -62 200 60 730 204 8 0 chr6 40223548 40223680 -142191562 + FLAM_A SINE Alu 1 133 0 374 304 89 0 chr6 40226110 40226268 -142188974 + L1MEd LINE L1 47 218 -5901 267 314 47 0 chr6 40227588 40227674 -142187568 + MIR SINE MIR 113 202 -60 469 301 80 24 chr6 40230290 40230503 -142184739 - MIR SINE MIR -25 237 13 467 312 91 5 chr6 40230705 40230926 -142184316 - L1MC4a LINE L1 -1879 5929 5690 2078 92 3 7 chr6 40231244 40231557 -142183685 + AluSx SINE Alu 1 312 0 359 222 65 37 chr6 40231559 40231667 -142183575 - MIR SINE MIR -103 159 49 2231 60 39 0 chr6 40231749 40232030 -142183212 - AluY SINE Alu -17 294 3 1449 176 8 19 chr6 40232109 40232370 -142182872 + AluJb SINE Alu 1 258 -54 206 216 0 0 chr6 40232390 40232427 -142182815 + (TG)n Simple_repeat Simple_repeat 2 38 0 2379 73 3 0 chr6 40232461 40232763 -142182479 + AluSg SINE Alu 1 303 -7 255 280 108 6 chr6 40232952 40233109 -142182133 - L1MC4a LINE L1 -1088 5058 4886 1524 153 24 4 chr6 40233609 40233857 -142181385 - AluJb SINE Alu -59 253 1 189 222 0 22 chr6 40234438 40234483 -142180759 - MIR SINE MIR -8 254 211 194 254 34 0 chr6 40234794 40234853 -142180389 - MIR SINE MIR -187 75 15 338 311 58 23 chr6 40235022 40235243 -142179999 - MIR SINE MIR -16 246 15 2448 137 20 0 chr6 40236525 40236918 -142178324 + MER4D LTR ERV1 1 401 -502 942 159 5 91 chr6 40236916 40237124 -142178118 - MER4E LTR ERV1 -132 647 458 * 180 0 0 0 chr6 40237327 40237347 -142177895 + (CA)n Simple_repeat Simple_repeat 1 20 0 777 187 10 66 chr6 40237355 40237390 -142177852 - MER4D LTR ERV1 -327 576 541 2173 95 23 0 chr6 40237390 40237694 -142177548 + AluY SINE Alu 1 311 0 777 187 10 66 chr6 40237694 40237856 -142177386 - MER4D LTR ERV1 -362 541 390 1383 169 33 72 chr6 40238021 40238126 -142177116 + AluJb SINE Alu 1 109 -203 2167 103 10 3 chr6 40238126 40238427 -142176815 - AluSx SINE Alu -7 305 3 1383 169 33 72 chr6 40238427 40238628 -142176614 + AluJb SINE Alu 109 295 -17 376 294 91 21 chr6 40238628 40238815 -142176427 - MIR SINE MIR -15 247 48 231 155 17 121 chr6 40239943 40239980 -142175262 - L1ME4a LINE L1 -19 6102 6063 2112 108 0 13 chr6 40239980 40240287 -142174955 + AluSx SINE Alu 1 303 -9 231 155 17 121 chr6 40240287 40240365 -142174877 - L1ME4a LINE L1 -58 6063 5999 278 245 175 11 chr6 40242063 40242179 -142173063 - MIR SINE MIR -71 137 3 288 318 73 13 chr6 40244589 40244740 -142170502 - L1ME4a LINE L1 -198 5923 5764 644 298 108 19 chr6 40245211 40245469 -142169773 + L3 LINE CR1 1282 1562 -15 663 284 77 5 chr6 40246903 40247125 -142168117 + MIR SINE MIR 4 241 -21 205 250 0 44 chr6 40249409 40249477 -142165765 + GA-rich Low_complexity Low_complexity 3 67 0 208 139 28 0 chr6 40249989 40250025 -142165217 + C-rich Low_complexity Low_complexity 4 40 0 2345 77 0 0 chr6 40251586 40251897 -142163345 + AluY SINE Alu 1 311 0 2178 109 0 0 chr6 40252546 40252840 -142162402 + AluSg SINE Alu 1 294 -16 426 263 97 11 chr6 40252848 40253023 -142162219 - MIR SINE MIR -64 198 9 459 286 19 0 chr6 40254444 40254549 -142160693 + L2 LINE L2 3189 3295 -18 1214 160 109 61 chr6 40255538 40255698 -142159544 - AluJo SINE Alu -4 308 157 1866 158 0 10 chr6 40255698 40256008 -142159234 - AluJb SINE Alu -5 307 1 1214 160 109 61 chr6 40256008 40256140 -142159102 - AluJo SINE Alu -155 157 2 317 281 61 9 chr6 40256162 40256276 -142158966 + MIR SINE MIR 137 256 -6 294 158 167 35 chr6 40256361 40256475 -142158767 - L1MC4a LINE L1 -1638 6170 6042 968 153 0 0 chr6 40256952 40257109 -142158133 - FRAM SINE Alu -2 174 18 211 143 29 0 chr6 40259102 40259137 -142156105 - MIR SINE MIR -110 152 117 182 375 54 0 chr6 40260448 40260504 -142154738 + MIR SINE MIR 38 96 -112 873 195 74 25 chr6 40261147 40261405 -142153837 + L1ME2 LINE L1 5879 6152 -12 370 219 27 128 chr6 40261452 40261671 -142153571 + L1MC4 LINE L1 7829 8025 -17 231 220 150 20 chr6 40262250 40262350 -142152892 - MER110 LTR ERV1 -77 414 302 203 282 68 29 chr6 40262401 40262504 -142152738 - MIR SINE MIR -79 183 77 515 313 44 12 chr6 40262632 40262817 -142152425 + MIR3 SINE MIR 3 191 -64 252 212 35 59 chr6 40263013 40263098 -142152144 - Tigger3(Golem) DNA MER2_type -1361 1668 1586 289 305 65 39 chr6 40263737 40263891 -142151351 + MIR SINE MIR 21 178 -84 344 288 20 0 chr6 40267834 40267951 -142147291 - MIR3 SINE MIR -25 183 63 1462 221 100 6 chr6 40268046 40268386 -142146856 + MLT1A2 LTR MaLR 3 374 0 2334 76 7 0 chr6 40268677 40268981 -142146261 + AluSp SINE Alu 1 306 -7 1309 184 31 59 chr6 40268981 40269302 -142145940 + L1MD2 LINE L1 6039 6350 -9 1858 148 3 22 chr6 40269388 40269706 -142145536 + AluJo SINE Alu 1 312 0 1319 206 140 43 chr6 40270410 40270759 -142144483 + LTR16C LTR ERVL 69 451 -40 843 204 33 6 chr6 40271209 40271390 -142143852 - MER5A DNA MER1_type -3 186 1 189 349 0 15 chr6 40271619 40271685 -142143557 - L2 LINE L2 -2 3311 3247 261 287 148 10 chr6 40271707 40271808 -142143434 + MIR3 SINE MIR 84 198 -10 303 314 29 20 chr6 40272927 40273029 -142142213 + L2 LINE L2 3160 3262 -10 213 220 85 17 chr6 40274137 40274196 -142141046 + MIR SINE MIR 194 256 -6 474 274 119 28 chr6 40275934 40276186 -142139056 + L2 LINE L2 3037 3311 -2 445 300 152 40 chr6 40277266 40277589 -142137653 + L3 LINE CR1 1122 1480 -97 219 322 0 0 chr6 40277831 40277890 -142137352 + MIR3 SINE MIR 141 199 -9 268 289 8 71 chr6 40278214 40278348 -142136894 + MIR3 SINE MIR 52 187 -48 218 216 20 0 chr6 40278440 40278491 -142136751 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 370 309 44 68 chr6 40278526 40278671 -142136571 + L1MC4a LINE L1 4969 5107 -1039 2143 97 7 3 chr6 40278671 40278971 -142136271 + AluSx SINE Alu 1 301 -11 370 309 44 68 chr6 40278971 40279074 -142136168 + L1MC4a LINE L1 5107 5211 -935 435 270 221 37 chr6 40279088 40279662 -142135580 + L1MC4a LINE L1 5254 5933 -1875 767 207 49 81 chr6 40281693 40281978 -142133264 + L2 LINE L2 3031 3306 -7 288 268 0 45 chr6 40282607 40282719 -142132523 + GA-rich Low_complexity Low_complexity 2 108 0 186 43 0 0 chr6 40282994 40283046 -142132196 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 43 0 0 chr6 40283046 40283069 -142132173 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr6 40284246 40284281 -142130961 + AT_rich Low_complexity Low_complexity 1 35 0 25 90 0 0 chr6 40284338 40284405 -142130837 + AT_rich Low_complexity Low_complexity 1 67 0 456 233 113 1 chr6 40285000 40285242 -142130000 - LTR33 LTR ERVL 0 521 228 22 0 0 0 chr6 40285607 40285629 -142129613 + AT_rich Low_complexity Low_complexity 1 22 0 2098 120 0 0 chr6 40286316 40286617 -142128625 - AluSx SINE Alu -11 301 1 278 362 91 9 chr6 40286698 40286919 -142128323 - MIR SINE MIR -2 260 22 1277 194 129 19 chr6 40287851 40288161 -142127081 + MER2 DNA MER2_type 2 345 0 2338 83 50 12 chr6 40289440 40289779 -142125463 + L1PA16 LINE L1 5806 6157 -9 198 0 0 0 chr6 40291363 40291385 -142123857 + (A)n Simple_repeat Simple_repeat 1 22 0 189 171 0 0 chr6 40291521 40291556 -142123686 + T-rich Low_complexity Low_complexity 1 35 0 413 310 76 6 chr6 40292085 40292243 -142122999 + MIR3 SINE MIR 9 177 -31 1958 130 3 7 chr6 40292805 40293105 -142122137 - AluSx SINE Alu -13 299 1 346 231 55 22 chr6 40294304 40294395 -142120847 + MIR SINE MIR 169 262 0 1964 158 0 0 chr6 40294726 40295037 -142120205 + AluJo SINE Alu 1 311 -1 281 314 0 39 chr6 40295126 40295228 -142120014 - L2 LINE L2 -224 3048 2951 646 153 0 0 chr6 40295231 40295329 -142119913 + AluJ/FLAM SINE Alu 2 99 -213 201 308 19 0 chr6 40296061 40296113 -142119129 + MIR SINE MIR 23 75 -133 390 326 188 18 chr6 40296279 40296497 -142118745 + MIR SINE MIR 7 261 -1 597 233 121 45 chr6 40297143 40297366 -142117876 - MIR SINE MIR -3 259 20 1086 214 285 6 chr6 40297680 40298045 -142117197 + MLT1J LTR MaLR 23 489 -22 25 0 0 0 chr6 40298125 40298150 -142117092 + AT_rich Low_complexity Low_complexity 1 25 0 907 144 118 43 chr6 40298150 40298337 -142116905 - AluJo SINE Alu -25 287 87 1849 166 0 6 chr6 40298387 40298701 -142116541 - AluSx SINE Alu 0 312 1 616 337 74 55 chr6 40298712 40299539 -142115703 + L2 LINE L2 2201 3090 -182 1209 199 36 25 chr6 40299819 40300100 -142115142 + AluJo SINE Alu 7 290 -22 381 281 0 0 chr6 40300226 40300308 -142114934 + HAL1 LINE L1 1 82 -2425 364 192 208 8 chr6 40300324 40300444 -142114798 + HAL1 LINE L1 192 335 -2172 528 247 13 46 chr6 40301042 40301224 -142114018 - MER20B DNA MER1_type -17 202 27 962 114 47 0 chr6 40301308 40301457 -142113785 - BC200 scRNA scRNA -43 157 2 25 0 0 0 chr6 40301474 40301499 -142113743 + AT_rich Low_complexity Low_complexity 1 25 0 1099 103 63 0 chr6 40301499 40301536 -142113706 - L1MA2 LINE L1 0 6304 6271 2348 80 0 3 chr6 40301536 40301848 -142113394 - AluY SINE Alu 0 311 1 1099 103 63 0 chr6 40301848 40301985 -142113257 - L1MA2 LINE L1 -33 6271 6119 1385 127 5 32 chr6 40302029 40302113 -142113129 - AluSx SINE Alu -97 215 130 2379 63 0 7 chr6 40302113 40302414 -142112828 - AluSc SINE Alu -10 299 1 1385 127 5 32 chr6 40302414 40302550 -142112692 - AluSx SINE Alu -182 130 1 278 328 8 0 chr6 40302805 40302924 -142112318 - L1M4 LINE L1 -3095 3051 2932 260 346 26 6 chr6 40303112 40303268 -142111974 + L1ME LINE L1 5567 5725 -396 826 146 32 0 chr6 40303561 40303684 -142111558 - FLAM_C SINE Alu -15 128 2 35 33 0 17 chr6 40303817 40303853 -142111389 + AT_rich Low_complexity Low_complexity 1 37 -22 885 134 0 8 chr6 40303853 40303980 -142111262 - FLAM_C SINE Alu -7 126 1 35 33 0 17 chr6 40303980 40304003 -142111239 + AT_rich Low_complexity Low_complexity 37 59 0 2624 130 78 66 chr6 40304013 40304497 -142110745 - LTR2B LTR ERV1 0 490 1 9059 88 5 6 chr6 40304497 40306490 -142108752 - Harlequin LTR ERV1 0 6896 4251 5022 47 19 0 chr6 40306481 40307073 -142108169 - Harlequin LTR ERV1 -2942 3954 3352 * 7437 48 17 10 chr6 40307072 40308075 -142107167 - Harlequin LTR ERV1 -4322 2574 1565 * 7920 55 44 14 chr6 40308056 40309107 -142106135 - Harlequin LTR ERV1 -5552 1344 263 2773 111 5 2 chr6 40309087 40309485 -142105757 - Harlequin LTR ERV1 -6497 399 1 * 2622 124 95 63 chr6 40309485 40309960 -142105282 - LTR2B LTR ERV1 0 490 1 2211 117 3 0 chr6 40310825 40311125 -142104117 + AluSx SINE Alu 1 301 -11 504 154 77 0 chr6 40311137 40311241 -142104001 + L1ME LINE L1 4527 4638 -1508 2051 196 71 50 chr6 40311273 40311550 -142103692 + L1ME LINE L1 4623 4893 -1273 2376 88 0 0 chr6 40311550 40311844 -142103398 + AluSc SINE Alu 1 294 -15 2051 196 71 50 chr6 40311844 40312571 -142102671 + L1ME LINE L1 4893 5815 -351 2062 142 3 0 chr6 40312972 40313274 -142101968 + AluSg SINE Alu 1 303 -7 428 331 128 53 chr6 40313415 40313774 -142101468 + L3 LINE CR1 1148 1533 -44 2082 216 80 55 chr6 40313865 40314425 -142100817 + L1MC4 LINE L1 7346 7926 -116 282 56 0 0 chr6 40314425 40314461 -142100781 + (CA)n Simple_repeat Simple_repeat 1 36 0 2082 216 80 55 chr6 40314461 40314549 -142100693 + L1MC4 LINE L1 7926 8010 -32 184 111 67 67 chr6 40314580 40314625 -142100617 - MER5B DNA MER1_type -124 54 10 * 189 315 55 14 chr6 40314614 40314687 -142100555 + L3 LINE CR1 1495 1570 -7 2309 111 3 0 chr6 40315065 40315372 -142099870 - AluSx SINE Alu -4 308 1 1471 151 50 25 chr6 40315464 40315743 -142099499 - AluJo SINE Alu -20 292 7 2140 100 21 0 chr6 40315751 40316032 -142099210 - AluSx SINE Alu 0 312 26 646 278 76 5 chr6 40316428 40316626 -142098616 - MIR SINE MIR -26 236 25 333 158 18 0 chr6 40316741 40316798 -142098444 + Alu SINE Alu 242 299 -3 566 59 0 119 chr6 40316804 40317006 -142098236 + (GGGAA)n Simple_repeat Simple_repeat 1 178 0 * 724 196 17 0 chr6 40316967 40317140 -142098102 + G-rich Low_complexity Low_complexity 3 178 0 612 143 54 0 chr6 40317161 40317329 -142097913 + GA-rich Low_complexity Low_complexity 4 180 0 350 194 42 0 chr6 40317329 40317401 -142097841 + G-rich Low_complexity Low_complexity 4 78 0 1782 142 3 64 chr6 40320211 40320522 -142094720 - AluJo SINE Alu -20 292 1 249 310 0 0 chr6 40320635 40320693 -142094549 + MER2 DNA MER2_type 285 342 -3 429 132 0 15 chr6 40320696 40320764 -142094478 - MER2 DNA MER2_type -247 98 32 2108 116 0 3 chr6 40321674 40321983 -142093259 + AluSx SINE Alu 1 308 0 2572 75 0 0 chr6 40322491 40322799 -142092443 + AluSq SINE Alu 1 308 -5 1709 154 19 45 chr6 40323511 40323823 -142091419 - AluJo SINE Alu -8 304 1 414 323 121 31 chr6 40324675 40325186 -142090056 - L1M4 LINE L1 -1979 4167 3567 1959 152 14 0 chr6 40325186 40325476 -142089766 + AluSx SINE Alu 1 294 -18 414 323 121 31 chr6 40325476 40325543 -142089699 - L1M4 LINE L1 -2579 3567 3507 2160 134 3 0 chr6 40325578 40325884 -142089358 + AluSx SINE Alu 1 307 -5 769 257 64 75 chr6 40326306 40326738 -142088504 + L1MC4a LINE L1 5463 5816 -305 5869 129 21 31 chr6 40327108 40328067 -142087175 + L1MA8 LINE L1 5157 6125 -166 2336 113 0 0 chr6 40328067 40328377 -142086865 + AluSx SINE Alu 1 310 -2 5869 129 21 31 chr6 40328377 40328404 -142086838 + L1MA8 LINE L1 6125 6151 -140 2225 81 0 14 chr6 40328404 40328723 -142086519 - AluSc SINE Alu 0 315 1 5869 129 21 31 chr6 40328723 40328878 -142086364 + L1MA8 LINE L1 6151 6290 -1 340 350 16 0 chr6 40330247 40330370 -142084872 + MIR SINE MIR 17 141 -121 781 244 74 49 chr6 40330793 40331158 -142084084 - L2 LINE L2 -52 3261 2888 284 286 138 66 chr6 40332260 40332456 -142082786 - L2 LINE L2 -90 3182 2973 194 333 83 10 chr6 40332521 40332617 -142082625 - L2 LINE L2 -432 2882 2780 229 315 92 0 chr6 40333018 40333148 -142082094 - L2 LINE L2 -906 2408 2267 279 300 100 61 chr6 40333238 40333420 -142081822 - MIR SINE MIR -56 206 20 3642 248 168 45 chr6 40334002 40335792 -142079450 + HAL1 LINE L1 14 2109 -398 2426 99 0 0 chr6 40335792 40336104 -142079138 + AluSx SINE Alu 1 312 0 3642 248 168 45 chr6 40336104 40336441 -142078801 + HAL1 LINE L1 2109 2403 -104 181 83 56 0 chr6 40336843 40336879 -142078363 + (CA)n Simple_repeat Simple_repeat 1 38 0 223 200 53 80 chr6 40337427 40337502 -142077740 + L2 LINE L2 3161 3233 -39 242 298 73 121 chr6 40337800 40338115 -142077127 + L2 LINE L2 2948 3247 -25 2316 106 0 3 chr6 40338218 40338521 -142076721 + AluSx SINE Alu 1 302 -10 373 302 187 11 chr6 40338958 40339140 -142076102 - MIR SINE MIR 0 262 49 204 143 43 43 chr6 40339924 40339994 -142075248 + (TATAA)n Simple_repeat Simple_repeat 1 70 0 1698 154 72 77 chr6 40340272 40340700 -142074542 + MER31B LTR ERV1 1 426 -40 2448 83 0 6 chr6 40340700 40341014 -142074228 + AluSx SINE Alu 1 312 0 577 182 20 20 chr6 40341034 40341133 -142074109 - FRAM SINE Alu -15 161 63 244 75 0 25 chr6 40341139 40341179 -142074063 + MER31B LTR ERV1 428 466 0 284 215 229 8 chr6 40342178 40342310 -142072932 - MIR3 SINE MIR -43 165 4 859 80 0 0 chr6 40343081 40343194 -142072048 + L1PA5 LINE L1 6040 6152 -2 2285 115 0 3 chr6 40343782 40344086 -142071156 + AluSx SINE Alu 1 303 -9 233 248 60 60 chr6 40344211 40344328 -142070914 - MIR3 SINE MIR -89 119 3 278 164 0 18 chr6 40344567 40344622 -142070620 + L1MC2 LINE L1 3198 3251 -2895 2251 122 0 0 chr6 40344628 40344923 -142070319 - AluSx SINE Alu -17 295 1 2317 119 0 0 chr6 40344948 40345260 -142069982 + AluSx SINE Alu 1 312 0 755 247 18 14 chr6 40345280 40345503 -142069739 + L1MC2 LINE L1 3264 3487 -2659 310 175 175 38 chr6 40345516 40345596 -142069646 - Tigger1 DNA MER2_type -2325 93 3 5475 149 65 48 chr6 40345598 40345851 -142069391 + L1MC2 LINE L1 4744 4991 -1353 1937 154 3 10 chr6 40345851 40346156 -142069086 + AluJb SINE Alu 1 303 -9 5475 149 65 48 chr6 40346156 40346422 -142068820 + L1MC2 LINE L1 4991 5251 -1093 1134 227 71 9 chr6 40346422 40346647 -142068595 - MER8 DNA MER2_type 0 239 1 5475 149 65 48 chr6 40346647 40346941 -142068301 + L1MC2 LINE L1 5251 5538 -806 2290 74 7 17 chr6 40346941 40347237 -142068005 - AluY SINE Alu -18 293 1 5475 149 65 48 chr6 40347237 40347974 -142067268 + L1MC2 LINE L1 5538 6315 -29 1311 223 72 0 chr6 40347974 40348265 -142066977 + AluJo SINE Alu 1 312 0 399 163 59 22 chr6 40348280 40348415 -142066827 + GA-rich Low_complexity Low_complexity 1 140 0 275 221 154 29 chr6 40349499 40349635 -142065607 + L1M4 LINE L1 3806 3958 -2188 937 143 0 0 chr6 40349661 40349794 -142065448 + FLAM_C SINE Alu 1 133 -10 2283 81 3 0 chr6 40349948 40350232 -142065010 + AluSg SINE Alu 6 290 -20 29 0 0 25 chr6 40350292 40350306 -142064936 + AT_rich Low_complexity Low_complexity 1 14 -25 2206 92 11 0 chr6 40350306 40350588 -142064654 - AluSq SINE Alu -16 297 13 29 0 0 25 chr6 40350588 40350613 -142064629 + AT_rich Low_complexity Low_complexity 14 39 0 1060 175 0 24 chr6 40351496 40351662 -142063580 - FRAM SINE Alu -4 162 1 2256 103 0 0 chr6 40352221 40352521 -142062721 - AluSg SINE Alu -10 300 1 573 269 36 0 chr6 40353725 40353892 -142061350 - MIR SINE MIR -49 213 41 25 0 0 0 chr6 40353892 40353917 -142061325 + AT_rich Low_complexity Low_complexity 1 25 0 797 154 8 0 chr6 40353917 40354040 -142061202 - FLAM_C SINE Alu -9 124 1 211 370 111 7 chr6 40354209 40354344 -142060898 + L2 LINE L2 3123 3271 -1 2931 0 0 0 chr6 40355142 40355448 -142059794 - AluYa5 SINE Alu -5 306 1 1816 170 0 0 chr6 40355842 40356131 -142059111 + AluJo SINE Alu 1 289 -23 2328 67 0 3 chr6 40356781 40357092 -142058150 + AluY SINE Alu 1 310 0 2127 73 4 0 chr6 40357595 40357856 -142057386 + AluSp SINE Alu 37 298 -15 2536 179 77 0 chr6 40358033 40358540 -142056702 + L1M4 LINE L1 5277 5822 -356 2000 119 0 0 chr6 40358545 40358798 -142056444 + AluSx SINE Alu 2 254 -58 1474 126 36 5 chr6 40358803 40359058 -142056184 + AluSx SINE Alu 53 314 0 2363 103 0 3 chr6 40359781 40360083 -142055159 + AluSx SINE Alu 1 301 -11 1986 95 4 8 chr6 40360086 40360349 -142054893 + AluSp SINE Alu 37 298 -15 270 322 35 41 chr6 40360653 40360824 -142054418 - MIR SINE MIR -70 192 23 506 255 7 0 chr6 40361352 40361505 -142053737 + GA-rich Low_complexity Low_complexity 2 155 0 310 209 12 35 chr6 40362224 40362310 -142052932 - MIR SINE MIR -133 129 46 539 278 65 9 chr6 40362453 40362669 -142052573 + MIR SINE MIR 8 235 -27 606 237 182 0 chr6 40364100 40364298 -142050944 - MIR SINE MIR -17 245 12 900 158 44 92 chr6 40365259 40365487 -142049755 - MER20 DNA MER1_type -1 218 2 928 164 6 6 chr6 40366303 40366462 -142048780 + AluJb SINE Alu 131 289 -23 342 0 0 0 chr6 40367100 40367138 -142048104 + (CA)n Simple_repeat Simple_repeat 2 39 0 545 269 86 0 chr6 40367568 40367765 -142047477 + MIR SINE MIR 47 260 -2 2235 100 7 3 chr6 40368238 40368538 -142046704 + AluSc SINE Alu 1 301 -8 617 274 133 0 chr6 40368834 40369060 -142046182 + MIR SINE MIR 1 256 -6 516 179 85 0 chr6 40369110 40369216 -142046026 + FLAM_A SINE Alu 23 137 -5 1668 153 29 22 chr6 40369233 40369507 -142045735 + AluJo SINE Alu 1 276 -36 1939 158 0 3 chr6 40370727 40371025 -142044217 + AluJo SINE Alu 16 312 0 865 224 79 0 chr6 40371406 40371634 -142043608 - MIR SINE MIR -5 257 12 2307 97 3 7 chr6 40372078 40372386 -142042856 + AluSx SINE Alu 1 307 -5 755 263 95 4 chr6 40372749 40372981 -142042261 - MIR SINE MIR -1 261 9 2307 121 0 0 chr6 40374936 40375242 -142040000 + AluSx SINE Alu 1 306 -6 1203 181 10 0 chr6 40375599 40375798 -142039444 + AluJo SINE Alu 18 218 -94 285 278 45 38 chr6 40375940 40376073 -142039169 - L2 LINE L2 0 3313 3180 214 218 109 0 chr6 40376188 40376243 -142038999 - MIR SINE MIR -114 148 88 27 73 0 0 chr6 40376848 40376903 -142038339 + AT_rich Low_complexity Low_complexity 1 55 0 2351 81 0 14 chr6 40377008 40377304 -142037938 + AluY SINE Alu 1 292 -19 1688 147 85 0 chr6 40377314 40377609 -142037633 + AluSx SINE Alu 1 317 0 1523 194 73 0 chr6 40377622 40377895 -142037347 + AluJb SINE Alu 1 293 -19 267 290 0 0 chr6 40378130 40378199 -142037043 + L2 LINE L2 3190 3258 -14 180 0 0 0 chr6 40380312 40380332 -142034910 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 2266 122 3 3 chr6 40380339 40380650 -142034592 - AluSx SINE Alu -1 311 1 1694 172 14 14 chr6 40380656 40380947 -142034295 - AluJo SINE Alu -21 291 1 194 269 102 9 chr6 40381547 40381655 -142033587 + L2 LINE L2 3137 3254 -18 651 262 79 5 chr6 40382088 40382290 -142032952 + L1ME3 LINE L1 5939 6155 -7 769 183 8 0 chr6 40383187 40383318 -142031924 - FLAM_C SINE Alu 0 133 2 597 275 84 0 chr6 40383322 40383500 -142031742 - MIR SINE MIR -41 221 29 2733 156 63 49 chr6 40383527 40383642 -142031600 - L1MD3 LINE L1 -11 7984 7872 1208 244 0 0 chr6 40383642 40383880 -142031362 - MER8 DNA MER2_type -1 238 1 2733 156 63 49 chr6 40383880 40384317 -142030925 - L1MD3 LINE L1 -123 7872 7424 543 272 14 14 chr6 40384317 40384464 -142030778 - MLT1F1 LTR MaLR -420 147 1 1213 195 61 0 chr6 40384466 40384712 -142030530 - L1MD3 LINE L1 -719 7276 7016 196 224 0 0 chr6 40384918 40384967 -142030275 + MIR SINE MIR 199 247 -15 283 289 0 22 chr6 40385073 40385163 -142030079 - MIR SINE MIR -118 144 57 420 238 60 46 chr6 40385596 40385747 -142029495 + MIR SINE MIR 98 250 -12 2040 147 13 0 chr6 40386118 40386424 -142028818 + AluSx SINE Alu 1 310 -2 2233 115 0 0 chr6 40386481 40386777 -142028465 - AluSc SINE Alu -13 296 1 21 0 0 0 chr6 40386778 40386799 -142028443 + AT_rich Low_complexity Low_complexity 1 21 0 1887 175 24 6 chr6 40386839 40387177 -142028065 - MER2 DNA MER2_type 0 344 1 1102 144 70 144 chr6 40387261 40387414 -142027828 + AluJo SINE Alu 23 145 -167 2080 93 3 71 chr6 40387414 40387737 -142027505 + AluSc SINE Alu 1 301 -8 1102 144 70 144 chr6 40387737 40387881 -142027361 + AluJo SINE Alu 145 298 -14 1197 83 45 0 chr6 40388409 40388565 -142026677 - AluSg/x SINE Alu -13 299 137 2321 97 6 0 chr6 40388681 40388992 -142026250 + AluSp SINE Alu 1 313 0 1916 182 0 0 chr6 40389420 40389722 -142025520 + AluJo SINE Alu 3 304 -8 727 175 4 158 chr6 40390468 40390638 -142024604 + MIR SINE MIR 9 131 -131 790 178 0 0 chr6 40390638 40390756 -142024486 + FLAM_C SINE Alu 1 118 -15 727 175 4 158 chr6 40390756 40390831 -142024411 + MIR SINE MIR 131 216 -46 585 220 42 42 chr6 40391014 40391205 -142024037 + MIR SINE MIR 60 250 -12 268 164 0 55 chr6 40391651 40391706 -142023536 + FLAM SINE Alu 76 127 -6 844 138 0 15 chr6 40391734 40391864 -142023378 - FLAM_C SINE Alu -5 128 1 686 258 131 16 chr6 40392241 40392629 -142022613 + L1ME4a LINE L1 5659 6091 -30 899 167 118 9 chr6 40392634 40392913 -142022329 + MER46C DNA MER2_type 2 338 0 418 298 151 5 chr6 40393129 40393334 -142021908 - MIR SINE MIR -15 247 13 758 135 0 117 chr6 40394132 40394242 -142021000 - AluJb SINE Alu -84 228 141 2338 99 3 3 chr6 40394242 40394546 -142020696 - AluSq SINE Alu -9 304 1 758 135 0 117 chr6 40394546 40394598 -142020644 - AluJb SINE Alu -171 141 85 2048 142 3 13 chr6 40394856 40395166 -142020076 + AluSx SINE Alu 1 307 -5 1866 116 95 0 chr6 40395166 40395451 -142019791 + AluSx SINE Alu 1 312 0 645 160 0 113 chr6 40395881 40396031 -142019211 + FLAM_A SINE Alu 1 133 0 1980 141 0 41 chr6 40396539 40396859 -142018383 - AluJb SINE Alu -5 307 1 883 138 0 0 chr6 40397792 40397922 -142017320 + FLAM_C SINE Alu 1 130 -3 532 286 111 0 chr6 40398005 40398222 -142017020 - MIR SINE MIR -17 245 5 2247 95 0 3 chr6 40399302 40399598 -142015644 + AluSc SINE Alu 1 295 -14 273 292 0 0 chr6 40399804 40399876 -142015366 - L2 LINE L2 0 3272 3201 244 252 118 16 chr6 40399995 40400122 -142015120 + L2 LINE L2 2919 3058 -214 2414 70 7 0 chr6 40400839 40401139 -142014103 + AluSx SINE Alu 1 302 -10 378 100 0 0 chr6 40401667 40401727 -142013515 + (CCG)n Simple_repeat Simple_repeat 2 61 0 23 0 0 0 chr6 40401998 40402021 -142013221 + GC_rich Low_complexity Low_complexity 1 23 0 204 222 178 33 chr6 40402602 40402692 -142012550 + L2 LINE L2 3211 3313 0 2138 69 0 4 chr6 40403944 40404205 -142011037 - AluSg SINE Alu -48 262 3 2371 95 16 0 chr6 40404465 40404771 -142010471 + AluSq SINE Alu 3 313 0 629 81 0 20 chr6 40404819 40404918 -142010324 - AluY SINE Alu -1 310 214 1425 148 54 67 chr6 40404928 40405076 -142010166 - AluJo SINE Alu -18 294 146 195 42 0 0 chr6 40405076 40405100 -142010142 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2154 90 0 28 chr6 40405100 40405389 -142009853 - AluSg SINE Alu -29 281 1 1425 148 54 67 chr6 40405389 40405537 -142009705 - AluJo SINE Alu -164 148 1 284 293 68 23 chr6 40405863 40405996 -142009246 + L1M4 LINE L1 2950 3088 -3058 445 222 208 0 chr6 40405997 40406141 -142009101 + FRAM SINE Alu 1 174 -2 21 71 0 0 chr6 40406202 40406244 -142008998 + AT_rich Low_complexity Low_complexity 1 42 0 5903 78 25 27 chr6 40406636 40407484 -142007758 - L1PA12 LINE L1 -15 6153 5308 809 128 17 8 chr6 40408424 40408541 -142006701 + AluJb SINE Alu 1 118 -194 180 0 0 0 chr6 40408541 40408561 -142006681 + (TTATG)n Simple_repeat Simple_repeat 4 23 0 2373 108 0 0 chr6 40408561 40408867 -142006375 - AluSx SINE Alu -6 306 1 2198 106 7 0 chr6 40408878 40409171 -142006071 - AluSq SINE Alu -18 295 1 2294 112 0 3 chr6 40409231 40409543 -142005699 + AluSx SINE Alu 1 311 -1 417 170 138 0 chr6 40409746 40409840 -142005402 - L1ME4a LINE L1 -4 6117 6011 873 246 117 21 chr6 40409893 40410394 -142004848 - L1ME4a LINE L1 -237 5884 5318 453 73 0 0 chr6 40411749 40411804 -142003438 - Alu SINE Alu -24 288 234 31 0 0 0 chr6 40411804 40411835 -142003407 + AT_rich Low_complexity Low_complexity 1 31 0 822 150 0 0 chr6 40411882 40411995 -142003247 - AluJo/FRAM SINE Alu -66 246 134 1730 174 10 16 chr6 40411995 40412306 -142002936 - AluJo SINE Alu -3 309 1 1504 171 41 8 chr6 40412957 40413232 -142002010 - AluJo SINE Alu 0 312 30 2267 109 0 0 chr6 40416680 40416982 -141998260 - AluSc SINE Alu -7 302 1 207 309 25 25 chr6 40417065 40417146 -141998096 - L3 LINE CR1 -913 664 584 635 95 0 0 chr6 40417302 40417386 -141997856 - HY3 scRNA scRNA -5 96 13 215 345 27 9 chr6 40419785 40419895 -141995347 - MIR SINE MIR -58 150 39 598 269 124 0 chr6 40420412 40420613 -141994629 - MIR SINE MIR -35 227 2 654 255 44 81 chr6 40420828 40421126 -141994116 + L1ME3A LINE L1 5493 5779 -391 639 152 159 0 chr6 40421127 40421272 -141993970 + L1MB7 LINE L1 6017 6184 0 2062 127 16 10 chr6 40421281 40421588 -141993654 + AluSx SINE Alu 2 310 -2 410 254 35 12 chr6 40421588 40421757 -141993485 + L1ME3A LINE L1 5778 5950 -220 2036 140 13 7 chr6 40421927 40422234 -141993008 + AluSx SINE Alu 1 309 -3 1430 183 107 8 chr6 40422330 40422487 -141992755 - AluJo SINE Alu -24 288 148 2236 113 0 3 chr6 40422487 40422788 -141992454 - AluSx SINE Alu -12 300 1 1430 183 107 8 chr6 40422788 40422892 -141992350 - AluJo SINE Alu -164 148 1 28 0 0 26 chr6 40422892 40422916 -141992326 + AT_rich Low_complexity Low_complexity 1 25 -13 2331 80 7 0 chr6 40422916 40423203 -141992039 - AluSq SINE Alu -24 289 1 28 0 0 26 chr6 40423203 40423217 -141992025 + AT_rich Low_complexity Low_complexity 25 38 0 652 209 12 78 chr6 40424118 40424226 -141991016 + L1MC5 LINE L1 7603 7688 -273 2601 137 30 2 chr6 40424226 40424665 -141990577 + L1MB3 LINE L1 5733 6183 0 652 209 12 78 chr6 40424665 40424800 -141990442 + L1MC5 LINE L1 7688 7830 -131 2087 98 41 10 chr6 40424801 40425096 -141990146 - AluSg SINE Alu -6 304 1 473 103 15 0 chr6 40425229 40425297 -141989945 - AluS SINE Alu -241 71 3 375 212 8 59 chr6 40425301 40425419 -141989823 + L1MC5 LINE L1 7824 7935 -26 3341 165 29 21 chr6 40425466 40426095 -141989147 + L1MA8 LINE L1 5423 6056 -235 457 171 27 96 chr6 40426087 40426233 -141989009 + L1MA7 LINE L1 6155 6290 -1 * 2132 122 7 0 chr6 40426248 40426543 -141988699 - AluSx SINE Alu -15 297 1 180 0 0 0 chr6 40426686 40426706 -141988536 + (A)n Simple_repeat Simple_repeat 1 20 0 234 238 138 12 chr6 40427564 40427644 -141987598 - L2 LINE L2 -3 3310 3221 217 288 0 15 chr6 40427916 40427982 -141987260 - MIR3 SINE MIR -22 186 122 1985 133 10 3 chr6 40428022 40428316 -141986926 + AluJb SINE Alu 1 296 -16 285 172 118 75 chr6 40428316 40428374 -141986868 + MER5A DNA MER1_type 67 132 -57 2322 103 0 0 chr6 40428374 40428676 -141986566 - AluY SINE Alu -9 302 1 285 172 118 75 chr6 40428676 40428710 -141986532 + MER5A DNA MER1_type 132 163 -26 648 233 29 94 chr6 40428725 40428820 -141986422 + L1ME4a LINE L1 5541 5641 -480 2284 82 7 0 chr6 40428820 40429132 -141986110 - AluY SINE Alu 0 314 1 648 233 29 94 chr6 40429132 40429344 -141985898 + L1ME4a LINE L1 5641 5829 -292 721 225 0 0 chr6 40429344 40429482 -141985760 + FLAM_C SINE Alu 1 138 -5 612 215 51 99 chr6 40429499 40429792 -141985450 + L1ME4a LINE L1 5840 6118 -3 2057 108 45 7 chr6 40429803 40430091 -141985151 + AluJb SINE Alu 1 299 -13 827 232 27 13 chr6 40430425 40430673 -141984569 + MIR SINE MIR 16 262 0 371 240 10 42 chr6 40430932 40431028 -141984214 + L2 LINE L2 3179 3271 -1 265 273 58 65 chr6 40431082 40431221 -141984021 + MIR SINE MIR 52 189 -73 532 264 16 0 chr6 40431322 40431447 -141983795 + FLAM_A SINE Alu 1 127 -6 1602 157 87 23 chr6 40436574 40436985 -141978257 - MER106B DNA MER1_type -3 1056 608 2136 110 0 29 chr6 40436985 40437294 -141977948 - AluSg SINE Alu -10 300 1 1602 157 87 23 chr6 40437294 40437367 -141977875 - MER106B DNA MER1_type -451 608 541 2143 107 7 4 chr6 40437367 40437673 -141977569 + AluSx SINE Alu 1 307 0 21201 134 45 33 chr6 40437676 40437764 -141977478 + L1MB8 LINE L1 10 95 -7470 1051 172 121 79 chr6 40437764 40438054 -141977188 + AluJb SINE Alu 1 302 0 21201 134 45 33 chr6 40438054 40438646 -141976596 + L1MB8 LINE L1 95 678 -6887 441 0 0 0 chr6 40438646 40438695 -141976547 + (GGAGA)n Simple_repeat Simple_repeat 4 52 0 21201 134 45 33 chr6 40438695 40440234 -141975008 + L1MB8 LINE L1 678 2197 -5368 1495 183 38 38 chr6 40440234 40440523 -141974719 + AluJo SINE Alu 1 289 -23 21201 134 45 33 chr6 40440523 40441070 -141974172 + L1MB8 LINE L1 2197 2736 -4829 2268 88 3 20 chr6 40441070 40441367 -141973875 - AluSp SINE Alu -15 298 7 21201 134 45 33 chr6 40441367 40441936 -141973306 + L1MB8 LINE L1 2736 3398 -4167 2074 147 20 0 chr6 40441936 40442242 -141973000 + AluSx SINE Alu 1 312 0 21201 134 45 33 chr6 40442242 40442605 -141972637 + L1MB8 LINE L1 3398 3755 -3810 2202 128 0 0 chr6 40442608 40442905 -141972337 - AluSx SINE Alu -15 297 1 189 0 0 0 chr6 40442906 40442927 -141972315 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 619 115 0 0 chr6 40442934 40443021 -141972221 - AluJb SINE Alu -19 293 207 1832 156 10 3 chr6 40443021 40443316 -141971926 + AluJb SINE Alu 14 310 -2 6623 171 33 108 chr6 40443317 40444797 -141970445 + L1MB8 LINE L1 4449 6038 -1686 2113 119 0 0 chr6 40444797 40445074 -141970168 + AluSx SINE Alu 14 290 -22 6623 171 33 108 chr6 40445074 40445332 -141969910 + L1MB8 LINE L1 6038 6314 -1410 2455 62 0 3 chr6 40445332 40445620 -141969622 + AluY SINE Alu 1 287 -24 6623 171 33 108 chr6 40445620 40445638 -141969604 + L1MB8 LINE L1 6314 6332 -1392 1180 152 0 0 chr6 40445638 40445802 -141969440 + AluJb SINE Alu 129 292 -20 6623 171 33 108 chr6 40445802 40445863 -141969379 + L1MB8 LINE L1 6332 6396 -1328 248 0 31 0 chr6 40445863 40445895 -141969347 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 6623 171 33 108 chr6 40445895 40446654 -141968588 + L1MB8 LINE L1 6396 7210 -514 1952 155 3 0 chr6 40446654 40446944 -141968298 + AluSx SINE Alu 1 291 -21 2407 93 0 7 chr6 40446947 40447257 -141967985 + AluY SINE Alu 1 308 -3 6623 171 33 108 chr6 40447257 40447576 -141967666 + L1MB8 LINE L1 6824 7165 -559 1285 96 25 0 chr6 40447576 40447771 -141967471 + L1MA3 LINE L1 6103 6305 0 1770 123 89 150 chr6 40447777 40447945 -141967297 - MER106B DNA MER1_type -508 551 374 1937 179 0 0 chr6 40447945 40448247 -141966995 + AluJo SINE Alu 1 302 -10 1770 123 89 150 chr6 40448247 40448559 -141966683 - MER106B DNA MER1_type -685 374 100 22 35 0 0 chr6 40448559 40448588 -141966654 + AT_rich Low_complexity Low_complexity 1 29 0 591 89 13 0 chr6 40448588 40448667 -141966575 - AluJ/FLAM SINE Alu -232 80 1 347 219 0 14 chr6 40448667 40448740 -141966502 - MER106B DNA MER1_type -948 111 40 957 182 87 9 chr6 40448740 40448971 -141966271 + L1MB8 LINE L1 7349 7597 0 289 208 19 0 chr6 40448972 40449025 -141966217 - MER106B DNA MER1_type -1005 54 1 582 124 160 108 chr6 40449625 40449819 -141965423 + MER3 DNA MER1_type 1 204 -5 1462 121 0 10 chr6 40449860 40450059 -141965183 + AluSq SINE Alu 1 197 -116 32 0 0 0 chr6 40450059 40450091 -141965151 + AT_rich Low_complexity Low_complexity 1 32 0 626 216 8 15 chr6 40450095 40450229 -141965013 + FLAM_A SINE Alu 1 133 0 1169 153 30 125 chr6 40450241 40450317 -141964925 - MER33 DNA MER1_type -2271 314 232 2295 79 14 3 chr6 40450317 40450608 -141964634 + AluY SINE Alu 1 294 -17 1169 153 30 125 chr6 40450608 40450633 -141964609 - MER33 DNA MER1_type -2353 232 206 2252 95 0 43 chr6 40450633 40450959 -141964283 - AluSq SINE Alu -1 312 1 1169 153 30 125 chr6 40450959 40451061 -141964181 - MER33 DNA MER1_type -2379 206 156 2448 124 100 96 chr6 40451061 40451673 -141963569 + LTR18B LTR ERVL 1 614 0 1169 153 30 125 chr6 40451673 40451828 -141963414 - MER33 DNA MER1_type -2429 156 1 2360 75 4 0 chr6 40451979 40452260 -141962982 - AluSp SINE Alu -31 282 1 1539 189 47 0 chr6 40452270 40452566 -141962676 - AluJb SINE Alu -2 310 1 1862 146 21 7 chr6 40453540 40453820 -141961422 - AluJo SINE Alu -20 292 9 969 150 7 0 chr6 40453829 40453969 -141961273 - AluJo SINE Alu -171 141 1 257 215 23 115 chr6 40454183 40454313 -141960929 - MIR SINE MIR -64 198 81 298 337 5 74 chr6 40454515 40454705 -141960537 - MER5B DNA MER1_type -1 177 1 985 199 0 0 chr6 40457112 40457273 -141957969 - FRAM SINE Alu -5 161 1 2174 90 17 0 chr6 40457281 40457580 -141957662 - AluSc SINE Alu -3 306 3 895 189 122 45 chr6 40457920 40458142 -141957100 + MER8 DNA MER2_type 1 239 0 420 183 120 57 chr6 40458351 40458479 -141956763 + L1MB8 LINE L1 5254 5373 -2435 1896 126 3 46 chr6 40458479 40458805 -141956437 + AluJo SINE Alu 1 312 0 1711 179 3 7 chr6 40458809 40459116 -141956126 + AluJb SINE Alu 2 307 -5 2244 92 0 0 chr6 40459116 40459409 -141955833 + AluSc SINE Alu 1 293 -16 420 183 120 57 chr6 40459409 40459449 -141955793 + L1MB8 LINE L1 5374 5439 -2369 943 239 48 67 chr6 40459452 40459801 -141955441 + L1ME3A LINE L1 4851 5188 -958 2339 87 0 0 chr6 40459801 40460100 -141955142 + AluSq SINE Alu 1 299 -14 943 239 48 67 chr6 40460100 40460290 -141954952 + L1ME3A LINE L1 5188 5380 -766 687 224 178 4 chr6 40460291 40460555 -141954687 + L1ME3A LINE L1 5403 5712 -454 397 233 69 9 chr6 40460574 40460622 -141954620 - L1MD3 LINE L1 -1811 6184 6140 2088 93 0 33 chr6 40460622 40460922 -141954320 - AluSg SINE Alu -20 290 1 397 233 69 9 chr6 40460922 40460989 -141954253 - L1MD3 LINE L1 -1855 6140 6062 1650 130 13 63 chr6 40460992 40461116 -141954126 + AluSx SINE Alu 18 147 -165 1945 121 0 36 chr6 40461116 40461421 -141953821 + AluSg SINE Alu 1 294 -16 1650 130 13 63 chr6 40461421 40461597 -141953645 + AluSx SINE Alu 147 303 -9 632 232 53 0 chr6 40461611 40461762 -141953480 + L1ME3A LINE L1 5750 5908 -262 236 182 0 0 chr6 40461771 40461815 -141953427 - L1MB8 LINE L1 -331 5853 5810 1798 139 52 3 chr6 40461824 40462133 -141953109 + L1MB8 LINE L1 5844 6167 -11 2075 138 3 0 chr6 40462172 40462483 -141952759 - AluSp SINE Alu -1 312 1 692 236 24 118 chr6 40462531 40462760 -141952482 + L1MC4 LINE L1 5655 5845 -1963 2305 80 0 13 chr6 40462760 40463062 -141952180 - AluSg SINE Alu -12 298 1 692 236 24 118 chr6 40463062 40463163 -141952079 + L1MC4 LINE L1 5845 5954 -1854 2063 93 0 10 chr6 40463320 40463610 -141951632 + AluSq SINE Alu 24 310 -3 2286 84 3 3 chr6 40463889 40464198 -141951044 - AluSc SINE Alu 0 309 1 930 282 75 3 chr6 40464225 40464530 -141950712 + L1MC4 LINE L1 6703 7029 -1013 1797 177 3 0 chr6 40464571 40464871 -141950371 + AluJb SINE Alu 1 301 -11 2097 98 27 0 chr6 40464907 40465202 -141950040 + AluSx SINE Alu 1 303 -9 1207 154 85 8 chr6 40465217 40465463 -141949779 + L1ME LINE L1 5542 5806 -360 854 167 6 26 chr6 40465463 40465619 -141949623 + MLT1A1 LTR MaLR 1 153 -212 1964 133 7 3 chr6 40465631 40465933 -141949309 + AluSq SINE Alu 10 312 -1 508 235 78 90 chr6 40465953 40466258 -141948984 + L1MC5 LINE L1 7272 7579 -382 2102 135 0 0 chr6 40466258 40466569 -141948673 + AluSx SINE Alu 1 311 -1 508 235 78 90 chr6 40466569 40466655 -141948587 + L1MC5 LINE L1 7579 7658 -303 2275 59 0 77 chr6 40466655 40466978 -141948264 - AluSq SINE Alu -15 298 1 508 235 78 90 chr6 40466978 40467062 -141948180 + L1MC5 LINE L1 7658 7742 -219 1190 167 14 5 chr6 40467064 40467279 -141947963 + AluSg/x SINE Alu 77 293 -19 1780 157 27 3 chr6 40467397 40467697 -141947545 + AluJo SINE Alu 5 311 -1 337 194 32 21 chr6 40467713 40467806 -141947436 + L1MC5 LINE L1 7832 7925 -36 331 293 66 0 chr6 40468020 40468126 -141947116 + L2 LINE L2 3201 3313 0 1904 108 56 3 chr6 40468361 40468647 -141946595 - AluSq SINE Alu -12 301 1 1889 123 53 0 chr6 40468691 40468975 -141946267 + AluSq SINE Alu 2 300 -13 685 31 62 21 chr6 40469688 40469784 -141945458 - HY3 scRNA scRNA -1 100 1 2331 68 3 0 chr6 40469973 40470268 -141944974 + AluSp SINE Alu 1 296 -17 1377 186 100 4 chr6 40470277 40470546 -141944696 + AluJo SINE Alu 1 295 -7 278 86 16 114 chr6 40471111 40471188 -141944054 + LTR40c LTR ERVL 392 461 -1 696 224 13 6 chr6 40471218 40471374 -141943868 + L1MC5 LINE L1 7289 7445 -516 1745 10 0 0 chr6 40471876 40472072 -141943170 + L1PA2 LINE L1 5957 6152 -3 1911 159 0 0 chr6 40472740 40473042 -141942200 - AluJb SINE Alu -10 302 1 2324 46 0 26 chr6 40473071 40473377 -141941865 + AluY SINE Alu 1 298 -13 1776 216 41 36 chr6 40473378 40473794 -141941448 + LTR40c LTR ERVL 35 452 -13 27 0 0 0 chr6 40474228 40474255 -141940987 + AT_rich Low_complexity Low_complexity 1 27 0 1743 152 7 26 chr6 40474596 40474906 -141940336 - AluJo SINE Alu -8 304 1 1955 118 7 16 chr6 40475283 40475588 -141939654 + AluSx SINE Alu 1 302 -10 1923 138 0 0 chr6 40475679 40475987 -141939255 + AluSx SINE Alu 1 308 0 453 256 147 6 chr6 40476059 40476258 -141938984 - MIR SINE MIR 0 262 38 1931 144 6 10 chr6 40476913 40477226 -141938016 + AluSx SINE Alu 1 312 0 541 254 28 7 chr6 40477845 40477987 -141937255 - MIR3 SINE MIR -7 201 57 1287 185 83 22 chr6 40478475 40478751 -141936491 + AluJo SINE Alu 1 293 -19 2177 88 7 3 chr6 40478886 40479182 -141936060 - AluSq SINE Alu -16 297 1 1240 185 44 47 chr6 40479188 40479349 -141935893 - AluJo SINE Alu -16 296 135 1865 116 7 31 chr6 40479349 40479642 -141935600 - AluSx SINE Alu -7 305 20 1240 185 44 47 chr6 40479642 40479777 -141935465 - AluJo SINE Alu -177 135 1 896 251 86 14 chr6 40479784 40480075 -141935167 - L1M4 LINE L1 -1317 4829 4518 393 208 0 0 chr6 40480087 40480164 -141935078 - Tigger2 DNA MER2_type -2383 335 259 * 3807 153 17 48 chr6 40480162 40480460 -141934782 + Tigger2 DNA MER2_type 61 367 -2351 1494 138 63 7 chr6 40480460 40480729 -141934513 + AluJo SINE Alu 1 284 -28 3807 153 17 48 chr6 40480729 40481136 -141934106 + Tigger2 DNA MER2_type 367 744 -1974 1421 136 30 53 chr6 40481205 40481373 -141933869 + Tigger2 DNA MER2_type 2461 2623 -95 1739 124 40 4 chr6 40481373 40481679 -141933563 + AluSx SINE Alu 1 316 0 1421 136 30 53 chr6 40481679 40481773 -141933469 + Tigger2 DNA MER2_type 2623 2718 0 506 263 49 49 chr6 40481775 40481825 -141933417 - L1M4 LINE L1 -2401 3745 3696 1831 151 3 3 chr6 40481825 40482117 -141933125 - AluJb SINE Alu -19 293 2 506 263 49 49 chr6 40482117 40482290 -141932952 - L1M4 LINE L1 -2449 3697 3522 510 266 44 55 chr6 40482293 40482352 -141932890 - L1M4 LINE L1 -2735 3411 3353 1902 138 24 0 chr6 40482352 40482643 -141932599 + AluJb SINE Alu 1 298 -14 510 266 44 55 chr6 40482643 40482854 -141932388 - L1M4 LINE L1 -2793 3353 3144 2293 87 3 10 chr6 40482855 40483167 -141932075 - AluSq SINE Alu -3 310 1 2022 121 3 3 chr6 40483173 40483471 -141931771 - AluSx SINE Alu -14 298 1 233 100 0 0 chr6 40483816 40483846 -141931396 + Alu SINE Alu 1 30 -270 1943 112 11 0 chr6 40484270 40484548 -141930694 + AluSq SINE Alu 2 282 -31 894 201 3 145 chr6 40485405 40485475 -141929767 - MIR SINE MIR 0 262 184 857 153 0 29 chr6 40485475 40485612 -141929630 - FLAM_A SINE Alu 0 133 1 2006 139 0 0 chr6 40485617 40485918 -141929324 - AluSx SINE Alu -11 301 1 894 201 3 145 chr6 40485918 40485938 -141929304 - MIR SINE MIR -82 180 159 1568 176 47 0 chr6 40485938 40486217 -141929025 - AluJb SINE Alu -20 292 1 894 201 3 145 chr6 40486217 40486408 -141928834 - MIR SINE MIR -103 159 15 204 369 62 28 chr6 40486549 40486725 -141928517 + L2 LINE L2 2796 2977 -337 739 186 69 100 chr6 40487951 40488032 -141927210 - MER20B DNA MER1_type -5 778 696 1878 122 7 33 chr6 40488032 40488335 -141926907 - AluJb SINE Alu -17 295 1 739 186 69 100 chr6 40488335 40488544 -141926698 - MER20B DNA MER1_type -87 696 497 1150 106 0 22 chr6 40488550 40488568 -141926674 + AluSq SINE Alu 116 133 -180 2117 84 35 0 chr6 40488568 40488855 -141926387 + AluSq SINE Alu 1 297 -16 1150 106 0 22 chr6 40488855 40489043 -141926199 + AluSq SINE Alu 133 313 0 947 241 136 34 chr6 40489089 40489192 -141926050 - MER20B DNA MER1_type -364 419 328 2106 57 3 57 chr6 40489192 40489527 -141925715 + AluY SINE Alu 1 319 0 947 241 136 34 chr6 40489527 40489746 -141925496 - MER20B DNA MER1_type -455 328 63 1620 123 0 32 chr6 40490193 40490446 -141924796 + AluSx SINE Alu 1 245 -67 193 222 44 0 chr6 40490861 40490906 -141924336 - L2 LINE L2 -80 3192 3146 488 266 162 6 chr6 40491433 40491606 -141923636 - MIR SINE MIR -61 201 2 1094 141 0 0 chr6 40491724 40491887 -141923355 - AluJb SINE Alu -15 297 135 1996 135 0 0 chr6 40491987 40492290 -141922952 + AluSx SINE Alu 1 303 -9 225 94 0 0 chr6 40492615 40492647 -141922595 + (A)n Simple_repeat Simple_repeat 1 32 0 2329 227 87 15 chr6 40492655 40493253 -141921989 + L1ME3A LINE L1 5452 6092 -78 846 227 79 22 chr6 40493283 40493512 -141921730 + MIR SINE MIR 8 249 -13 320 257 188 21 chr6 40493645 40493789 -141921453 + MIR3 SINE MIR 17 184 -24 511 262 157 29 chr6 40494098 40494226 -141921016 - MIR SINE MIR -14 248 138 1842 89 0 4 chr6 40494226 40494473 -141920769 + AluSc SINE Alu 1 246 -63 511 262 157 29 chr6 40494473 40494554 -141920688 - MIR SINE MIR -124 138 12 291 268 49 12 chr6 40494810 40494892 -141920350 + L2 LINE L2 3221 3305 -8 2222 83 0 19 chr6 40495528 40495840 -141919402 + AluSc SINE Alu 1 306 -3 1595 151 34 10 chr6 40495851 40496142 -141919100 + AluJo SINE Alu 1 298 -14 2295 69 3 16 chr6 40496142 40496446 -141918796 + AluSc SINE Alu 1 300 -9 381 250 62 0 chr6 40496501 40496597 -141918645 + MIR SINE MIR 45 146 -62 373 197 66 0 chr6 40496805 40496881 -141918361 - MIR SINE MIR -14 248 168 1259 75 35 0 chr6 40496885 40497059 -141918183 - L1MA1 LINE L1 0 6302 6123 1393 116 14 0 chr6 40497059 40497266 -141917976 - AluSg/x SINE Alu -18 292 83 288 68 0 0 chr6 40497267 40497311 -141917931 - L1MA1 LINE L1 -220 6082 6039 224 167 24 0 chr6 40497312 40497354 -141917888 - MIR SINE MIR -96 166 124 22 0 0 0 chr6 40498757 40498779 -141916463 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 40499160 40499184 -141916058 + GC_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 40499251 40499279 -141915963 + GC_rich Low_complexity Low_complexity 1 28 0 212 379 0 0 chr6 40499488 40499554 -141915688 - L2 LINE L2 -2 3270 3205 467 221 134 0 chr6 40499805 40499932 -141915310 - MIR3 SINE MIR -34 174 31 1829 137 7 0 chr6 40500317 40500602 -141914640 + AluJb SINE Alu 1 287 -25 2134 86 17 0 chr6 40501186 40501467 -141913775 + AluSp SINE Alu 1 289 -24 233 29 0 29 chr6 40501467 40501502 -141913740 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 5457 139 19 56 chr6 40501537 40501607 -141913635 - L1MD1 LINE L1 0 6242 6171 2012 110 38 0 chr6 40501607 40501897 -141913345 + AluSx SINE Alu 1 301 -11 5457 139 19 56 chr6 40501897 40502053 -141913189 - L1MD1 LINE L1 -71 6171 6011 2157 92 3 3 chr6 40502053 40502345 -141912897 - AluSx SINE Alu -20 292 1 5457 139 19 56 chr6 40502345 40502513 -141912729 - L1MD1 LINE L1 -231 6011 5838 1872 146 0 16 chr6 40502513 40502829 -141912413 - AluJo SINE Alu -1 311 1 5457 139 19 56 chr6 40502829 40503489 -141911753 - L1MD1 LINE L1 -404 5838 5226 1069 139 5 59 chr6 40503490 40503692 -141911550 - AluJb SINE Alu 0 312 122 6482 51 17 76 chr6 40503692 40505453 -141909789 - SVA Other Other -683 1386 3 499 91 11 11 chr6 40505463 40505551 -141909691 + (GGGAGA)n Simple_repeat Simple_repeat 3 90 0 859 131 0 15 chr6 40505552 40505689 -141909553 - AluJb SINE Alu -177 135 1 2424 53 3 0 chr6 40505740 40506039 -141909203 - AluSp SINE Alu -3 310 11 479 200 0 11 chr6 40506107 40506197 -141909045 - AluJo SINE Alu -101 211 123 1852 133 4 0 chr6 40506200 40506478 -141908764 - AluSx SINE Alu -33 279 1 1396 208 113 40 chr6 40506479 40506615 -141908627 - L1MD1 LINE L1 -1293 4853 4728 1258 178 106 0 chr6 40506615 40506890 -141908352 - AluJo SINE Alu -8 304 1 1396 208 113 40 chr6 40506890 40506945 -141908297 - L1MD1 LINE L1 -1418 4728 4678 1497 148 84 47 chr6 40506945 40507243 -141907999 - AluSq SINE Alu -4 309 1 1396 208 113 40 chr6 40507243 40507598 -141907644 - L1MD1 LINE L1 -1468 4678 4266 744 217 0 32 chr6 40507653 40507810 -141907432 - AluJb SINE Alu -15 297 146 1258 204 106 0 chr6 40507813 40508170 -141907072 - L1MD1 LINE L1 -1902 4244 3850 1583 104 0 0 chr6 40508181 40508393 -141906849 - AluSq SINE Alu -17 296 85 1039 69 0 0 chr6 40508396 40508527 -141906715 - AluSp SINE Alu -181 132 2 2207 93 3 0 chr6 40508532 40508823 -141906419 - AluSp SINE Alu -21 292 1 452 270 35 0 chr6 40508826 40508941 -141906301 - L1MD1 LINE L1 -2300 3846 3728 * 2550 171 74 32 chr6 40508932 40509178 -141906064 - L1M4 LINE L1 -743 5403 5169 2137 128 0 6 chr6 40509178 40509491 -141905751 + AluSx SINE Alu 1 311 -1 2550 171 74 32 chr6 40509491 40509929 -141905313 - L1M4 LINE L1 -977 5169 4730 2062 75 7 0 chr6 40509941 40510072 -141905170 + AluY SINE Alu 1 130 -177 180 0 0 0 chr6 40510072 40510092 -141905150 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2062 75 7 0 chr6 40510092 40510265 -141904977 + AluY SINE Alu 130 307 0 2210 94 0 3 chr6 40510270 40510579 -141904663 + AluY SINE Alu 4 311 0 27 0 0 0 chr6 40510579 40510606 -141904636 + AT_rich Low_complexity Low_complexity 1 27 0 785 107 24 83 chr6 40510608 40510737 -141904505 - L1MDa LINE L1 -4142 2398 2280 2224 43 46 0 chr6 40510737 40511019 -141904223 - AluY SINE Alu -16 295 1 785 107 24 83 chr6 40511019 40511058 -141904184 - L1MDa LINE L1 -4260 2280 2240 2156 100 3 0 chr6 40511058 40511357 -141903885 - AluSx SINE Alu -12 300 1 2149 79 0 16 chr6 40511748 40512051 -141903191 + AluSq SINE Alu 1 298 -15 1246 117 66 5 chr6 40512387 40512583 -141902659 - AluJb SINE Alu -19 293 86 2416 60 0 0 chr6 40512820 40513121 -141902121 - AluY SINE Alu -10 301 1 2063 106 0 0 chr6 40513215 40513521 -141901721 + AluSg SINE Alu 1 306 0 1398 140 42 39 chr6 40513847 40514133 -141901109 - AluJb SINE Alu -25 287 1 267 255 163 20 chr6 40514172 40514270 -141900972 + MER5A DNA MER1_type 53 164 -25 2299 82 0 0 chr6 40514362 40514656 -141900586 - AluSc SINE Alu -15 294 1 2465 47 3 0 chr6 40514850 40515147 -141900095 + AluY SINE Alu 1 298 -13 955 209 75 98 chr6 40515189 40515548 -141899694 - L1MC4a LINE L1 -1937 5871 5521 2144 111 0 7 chr6 40515555 40515861 -141899381 - AluSg SINE Alu -6 304 1 846 205 0 0 chr6 40515990 40516156 -141899086 + FRAM SINE Alu 1 165 -11 653 212 0 0 chr6 40516214 40516332 -141898910 + FLAM_C SINE Alu 2 119 -24 1704 172 16 7 chr6 40516348 40516656 -141898586 - AluJb SINE Alu -1 311 1 1932 105 36 4 chr6 40516662 40516987 -141898255 - AluSx SINE Alu 0 336 3 249 194 161 0 chr6 40518915 40518977 -141896265 + Charlie8 DNA MER1_type 73 144 -2273 573 147 45 106 chr6 40518978 40519176 -141896066 - L1MC5 LINE L1 -36 7925 7740 410 303 8 0 chr6 40519205 40519324 -141895918 + Charlie8 DNA MER1_type 144 263 -2154 21 0 0 0 chr6 40519596 40519617 -141895625 + AT_rich Low_complexity Low_complexity 1 21 0 2187 96 0 10 chr6 40519879 40520182 -141895060 - AluSc SINE Alu -9 300 1 498 154 55 0 chr6 40520673 40520764 -141894478 + L1MC3 LINE L1 7078 7173 -612 2266 97 3 0 chr6 40520987 40521287 -141893955 - AluSp SINE Alu -11 302 2 320 261 50 68 chr6 40521645 40521736 -141893506 + L1ME LINE L1 5667 5755 -366 1649 94 140 0 chr6 40521736 40522001 -141893241 + AluSx SINE Alu 1 302 0 320 261 50 68 chr6 40522001 40522070 -141893172 + L1ME LINE L1 5755 5824 -297 2186 121 0 6 chr6 40522445 40522759 -141892483 - AluSx SINE Alu 0 312 1 1450 196 32 0 chr6 40523609 40523890 -141891352 - AluJb SINE Alu -22 290 1 1988 133 7 10 chr6 40524730 40525038 -141890204 + AluJo SINE Alu 1 307 -5 1659 174 3 10 chr6 40525188 40525482 -141889760 + AluJo SINE Alu 1 292 -20 1873 125 3 24 chr6 40525486 40525823 -141889419 + AluSx SINE Alu 1 331 0 280 119 169 0 chr6 40525839 40525898 -141889344 + L1MC5 LINE L1 7754 7822 -139 1013 206 38 10 chr6 40525898 40526107 -141889135 + MER20 DNA MER1_type 1 215 -4 2091 103 3 0 chr6 40526198 40526489 -141888753 - AluSx SINE Alu -20 292 1 26 0 0 0 chr6 40526533 40526559 -141888683 + AT_rich Low_complexity Low_complexity 1 26 0 1914 112 0 53 chr6 40526559 40526723 -141888519 - AluSx SINE Alu -23 289 147 2357 71 13 0 chr6 40526723 40527031 -141888211 - AluSp SINE Alu -1 312 1 1914 112 0 53 chr6 40527031 40527169 -141888073 - AluSx SINE Alu -165 147 3 27 29 0 0 chr6 40527180 40527214 -141888028 + AT_rich Low_complexity Low_complexity 1 34 0 2054 76 25 0 chr6 40527214 40527523 -141887719 + AluSx SINE Alu 1 316 0 2063 113 10 0 chr6 40527527 40527827 -141887415 - AluSx SINE Alu -9 303 1 372 231 75 106 chr6 40528815 40528910 -141886332 + MER58A DNA MER1_type 1 91 -250 1646 179 0 7 chr6 40528910 40529206 -141886036 - AluJb SINE Alu -17 295 2 372 231 75 106 chr6 40529206 40529270 -141885972 + MER58A DNA MER1_type 91 155 -69 757 212 0 0 chr6 40529273 40529410 -141885832 + FRAM SINE Alu 24 160 -16 2137 85 37 0 chr6 40529418 40529713 -141885529 + AluY SINE Alu 1 306 -5 2056 121 7 0 chr6 40529789 40530086 -141885156 + AluSx SINE Alu 1 299 -13 2040 112 10 19 chr6 40530148 40530460 -141884782 - AluSg SINE Alu -1 309 1 1351 153 141 0 chr6 40530853 40531115 -141884127 + AluSg SINE Alu 1 299 -11 3215 163 71 122 chr6 40531388 40531833 -141883409 + Charlie1a DNA MER1_type 3 469 -2292 561 157 0 0 chr6 40531833 40531916 -141883326 - AluJ/FLAM SINE Alu -228 84 2 3215 163 71 122 chr6 40531916 40532177 -141883065 + Charlie1a DNA MER1_type 469 738 -2023 2053 30 45 22 chr6 40532177 40532444 -141882798 - AluY SINE Alu 0 311 39 3215 163 71 122 chr6 40532444 40532594 -141882648 + Charlie1a DNA MER1_type 738 894 -561 2218 82 3 0 chr6 40532612 40532906 -141882336 + AluSp SINE Alu 1 295 -18 588 213 87 0 chr6 40532959 40533086 -141882156 - AluJb SINE Alu -39 273 136 551 270 0 61 chr6 40533941 40534096 -141881146 - L2 LINE L2 0 3313 3171 1551 152 7 56 chr6 40534096 40534242 -141881000 + AluJb SINE Alu 2 127 -175 2259 70 0 0 chr6 40534242 40534541 -141880701 + AluSx SINE Alu 1 299 -13 1551 152 7 56 chr6 40534541 40534697 -141880545 + AluJb SINE Alu 127 289 -13 551 270 0 61 chr6 40534697 40534737 -141880505 - L2 LINE L2 -142 3171 3130 2317 68 0 10 chr6 40534805 40535116 -141880126 - AluY SINE Alu -2 309 2 367 224 224 15 chr6 40535432 40535566 -141879676 - MIR SINE MIR 0 262 101 1262 164 95 8 chr6 40535724 40535986 -141879256 - AluJb SINE Alu -12 300 16 27 0 0 0 chr6 40536040 40536067 -141879175 + AT_rich Low_complexity Low_complexity 1 27 0 329 296 184 28 chr6 40536075 40536314 -141878928 + L1MC4 LINE L1 7333 7714 -328 2031 131 0 6 chr6 40536408 40536722 -141878520 - AluSx SINE Alu 0 312 1 936 178 0 25 chr6 40536838 40537001 -141878241 + FRAM SINE Alu 1 159 -7 2120 107 0 7 chr6 40537001 40537300 -141877942 + AluSc SINE Alu 1 297 -12 667 229 82 69 chr6 40537519 40537712 -141877530 + LTR33A LTR ERVL 269 467 -56 2532 36 0 3 chr6 40537712 40538015 -141877227 - AluY SINE Alu -9 302 1 667 229 82 69 chr6 40538015 40538066 -141877176 + LTR33A LTR ERVL 467 516 -7 189 107 0 0 chr6 40538066 40538094 -141877148 + (TA)n Simple_repeat Simple_repeat 2 29 0 2314 90 3 0 chr6 40538518 40538828 -141876414 - AluY SINE Alu 0 311 1 2171 115 0 0 chr6 40538830 40539134 -141876108 - AluSx SINE Alu -8 304 1 675 254 70 60 chr6 40539170 40539374 -141875868 - L1MC4a LINE L1 -1952 5856 5656 2087 126 0 0 chr6 40539374 40539683 -141875559 + AluSx SINE Alu 1 309 -3 2060 110 3 52 chr6 40539687 40540015 -141875227 + AluSx SINE Alu 1 312 0 675 254 70 60 chr6 40540015 40540104 -141875138 - L1MC4a LINE L1 -2154 5654 5555 249 196 27 98 chr6 40540116 40540159 -141875083 - L1MC4a LINE L1 -2338 5470 5426 1853 123 28 3 chr6 40540159 40540444 -141874798 - AluSx SINE Alu -20 292 1 249 196 27 98 chr6 40540444 40540512 -141874730 - L1MC4a LINE L1 -2382 5426 5367 1333 165 0 0 chr6 40540517 40540729 -141874513 + AluJb SINE Alu 87 298 -14 277 136 0 0 chr6 40540759 40540803 -141874439 - Alu SINE Alu -8 294 251 253 81 0 54 chr6 40540803 40540840 -141874402 - Alu SINE Alu -17 284 250 1709 138 0 4 chr6 40540840 40541100 -141874142 - AluSx SINE Alu -27 285 27 439 334 64 42 chr6 40541111 40541176 -141874066 - L1MC4a LINE L1 -757 5389 5327 2188 109 0 6 chr6 40541176 40541489 -141873753 - AluY SINE Alu 0 311 1 439 334 64 42 chr6 40541489 40541758 -141873484 - L1MC4a LINE L1 -819 5327 5044 2182 116 0 0 chr6 40541758 40542060 -141873182 + AluSx SINE Alu 1 302 -10 439 334 64 42 chr6 40542060 40542083 -141873159 - L1MC4a LINE L1 -1102 5044 5023 239 79 26 0 chr6 40542083 40542121 -141873121 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1585 173 11 18 chr6 40542166 40542449 -141872793 - AluJo SINE Alu -31 281 1 563 277 71 92 chr6 40542451 40542819 -141872423 - L1MC4a LINE L1 -1099 5047 4688 391 272 59 64 chr6 40542858 40543060 -141872182 - MLT1K LTR MaLR -10 578 378 259 381 108 7 chr6 40543516 40543655 -141871587 - L2 LINE L2 -6 3266 3114 1054 231 4 48 chr6 40543699 40543908 -141871334 + MIR SINE MIR 7 203 -59 2389 75 0 0 chr6 40543908 40544214 -141871028 + AluY SINE Alu 1 306 -5 1054 231 4 48 chr6 40544214 40544272 -141870970 + MIR SINE MIR 203 262 0 1647 163 30 3 chr6 40545335 40545630 -141869612 - AluJb SINE Alu -9 303 1 183 139 0 0 chr6 40545810 40545846 -141869396 + (CA)n Simple_repeat Simple_repeat 2 37 0 383 307 190 0 chr6 40545910 40546115 -141869127 - MIR SINE MIR -6 256 13 829 129 23 23 chr6 40546320 40546452 -141868790 - FLAM_C SINE Alu 0 133 2 856 151 0 108 chr6 40547124 40547282 -141867960 - AluJo SINE Alu -26 286 149 1729 151 3 22 chr6 40547282 40547599 -141867643 - AluJo SINE Alu -1 311 1 856 151 0 108 chr6 40547599 40547625 -141867617 - AluJo SINE Alu -163 149 122 487 125 33 150 chr6 40547671 40547708 -141867534 - HY1 scRNA scRNA -6 106 66 774 154 31 15 chr6 40547708 40547838 -141867404 + FLAM_C SINE Alu 2 133 0 487 125 33 150 chr6 40547838 40547920 -141867322 - HY1 scRNA scRNA -46 66 1 2180 94 7 0 chr6 40547920 40548219 -141867023 - AluSp SINE Alu -12 301 1 2407 70 0 0 chr6 40548233 40548534 -141866708 - AluY SINE Alu -10 301 1 1792 271 64 17 chr6 40548563 40549202 -141866040 + L1MC4a LINE L1 5264 5932 -1876 21 0 0 0 chr6 40549205 40549226 -141866016 + AT_rich Low_complexity Low_complexity 1 21 0 1348 146 0 107 chr6 40549245 40549352 -141865890 + AluJo SINE Alu 28 145 -167 1726 172 10 3 chr6 40549352 40549648 -141865594 - AluSx SINE Alu -14 298 1 1348 146 0 107 chr6 40549648 40549848 -141865394 + AluJo SINE Alu 145 302 -10 2181 112 0 0 chr6 40550090 40550394 -141864848 + AluSx SINE Alu 1 304 -8 415 160 235 71 chr6 40550915 40551153 -141864089 + L1M3 LINE L1 5066 5342 -804 779 160 0 33 chr6 40551153 40551417 -141863825 + AluJb SINE Alu 2 311 -1 448 200 58 26 chr6 40551417 40551572 -141863670 + L1M3 LINE L1 5332 5491 -689 1994 95 20 14 chr6 40551574 40551869 -141863373 + AluSx SINE Alu 1 297 -15 439 259 0 67 chr6 40551912 40552047 -141863195 + L1ME2 LINE L1 6002 6127 -37 1975 106 0 45 chr6 40552051 40552188 -141863054 + AluSq SINE Alu 1 143 -170 2253 87 0 3 chr6 40552188 40552486 -141862756 + AluSg SINE Alu 1 297 -13 1975 106 0 45 chr6 40552486 40552660 -141862582 + AluSq SINE Alu 143 298 -15 1535 184 13 26 chr6 40552667 40552977 -141862265 + AluJo SINE Alu 6 311 -1 609 244 45 0 chr6 40552977 40553133 -141862109 - MER41D LTR ERV1 0 557 395 2246 92 13 0 chr6 40553146 40553452 -141861790 - AluSq SINE Alu -2 311 2 864 201 0 0 chr6 40553458 40553612 -141861630 - AluJb SINE Alu -14 298 145 2070 115 0 3 chr6 40553621 40553917 -141861325 - AluSx SINE Alu -17 295 1 3484 174 22 13 chr6 40553918 40554544 -141860698 - LTR27 LTR ERV1 -3 633 2 888 152 8 0 chr6 40554563 40554695 -141860547 - FLAM_C SINE Alu 0 133 1 2209 86 3 3 chr6 40554700 40555004 -141860238 - AluSq SINE Alu -9 304 1 198 71 0 0 chr6 40555004 40555032 -141860210 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2053 82 11 0 chr6 40555032 40555299 -141859943 - AluSg SINE Alu -30 280 11 379 71 36 0 chr6 40555332 40555388 -141859854 - L1PA3 LINE L1 -3 6152 6095 359 83 0 0 chr6 40555388 40555436 -141859806 - MER41D LTR ERV1 -509 48 1 1841 222 113 7 chr6 40555528 40555970 -141859272 + L1MC4a LINE L1 6440 6928 -880 2114 91 3 58 chr6 40555974 40556304 -141858938 + AluSx SINE Alu 1 312 0 1211 214 3 50 chr6 40556314 40556617 -141858625 + AluJo SINE Alu 7 295 -17 2030 98 3 14 chr6 40556620 40556933 -141858309 + AluSc SINE Alu 1 310 0 1761 216 146 35 chr6 40556933 40557107 -141858135 + L1MC4 LINE L1 7002 7155 -887 1957 115 34 3 chr6 40557107 40557402 -141857840 + AluSx SINE Alu 1 304 -8 1761 216 146 35 chr6 40557402 40557699 -141857543 + L1MC4 LINE L1 7155 7418 -624 1191 187 0 136 chr6 40557699 40558031 -141857211 - AluY SINE Alu -14 287 1 1761 216 146 35 chr6 40558031 40558217 -141857025 + L1MC4 LINE L1 7418 7733 -309 793 244 0 0 chr6 40558219 40558375 -141856867 - MLT1D LTR MaLR 0 505 350 2195 113 3 0 chr6 40558407 40558699 -141856543 - AluSq SINE Alu -20 293 1 280 231 380 0 chr6 40558701 40558822 -141856420 + L1MC4 LINE L1 7871 8037 -5 318 310 38 39 chr6 40558974 40559170 -141856072 - MIR SINE MIR -46 216 25 825 232 116 93 chr6 40559263 40559387 -141855855 - MLT1J2 LTR MaLR 0 450 330 1517 132 9 0 chr6 40559387 40559600 -141855642 - AluJb SINE Alu -13 299 85 825 232 116 93 chr6 40559600 40559874 -141855368 - MLT1J2 LTR MaLR -120 330 38 2258 101 0 7 chr6 40559874 40560185 -141855057 + AluSq SINE Alu 1 309 0 825 232 116 93 chr6 40560185 40560224 -141855018 - MLT1J2 LTR MaLR -412 38 1 313 230 146 30 chr6 40560224 40560389 -141854853 + MIR SINE MIR 77 260 -2 1692 164 38 0 chr6 40560390 40560562 -141854680 - AluJb SINE Alu -8 304 115 249 57 0 0 chr6 40560562 40560597 -141854645 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1692 164 38 0 chr6 40560597 40560717 -141854525 - AluJb SINE Alu -197 115 1 1659 77 39 0 chr6 40561604 40561811 -141853431 + AluSc SINE Alu 1 215 -94 189 94 0 0 chr6 40561873 40561905 -141853337 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1517 159 3 102 chr6 40561905 40562067 -141853175 - AluSq SINE Alu -17 286 168 2113 120 0 23 chr6 40562067 40562367 -141852875 - AluSx SINE Alu -19 293 1 1517 159 3 102 chr6 40562367 40562519 -141852723 - AluSq SINE Alu -135 168 3 1917 130 51 0 chr6 40562680 40562973 -141852269 + AluSg SINE Alu 2 309 -1 2449 81 0 3 chr6 40563288 40563597 -141851645 - AluY SINE Alu -3 308 1 247 274 0 0 chr6 40563623 40563696 -141851546 + MIR SINE MIR 124 196 -66 348 167 13 103 chr6 40564241 40564319 -141850923 + AluJ/FLAM SINE Alu 1 58 -244 245 73 0 24 chr6 40564436 40564477 -141850765 + Alu SINE Alu 264 303 -5 2255 96 3 32 chr6 40564514 40564826 -141850416 - AluSg SINE Alu -7 303 1 1634 275 49 45 chr6 40564847 40565114 -141850128 + L1MB4 LINE L1 3213 3477 -2669 1535 158 121 0 chr6 40565114 40565386 -141849856 - AluJb SINE Alu -7 305 1 1634 275 49 45 chr6 40565386 40565879 -141849363 + L1MB4 LINE L1 3477 3976 -2170 879 212 58 5 chr6 40565879 40566127 -141849115 + MLT1D LTR MaLR 7 298 -207 * 1029 245 112 51 chr6 40566125 40566456 -141848786 + MLT1D LTR MaLR 148 498 -7 762 199 33 28 chr6 40566448 40566629 -141848613 + MLT1D LTR MaLR 324 505 0 * 2041 200 34 30 chr6 40566629 40567028 -141848214 + L1MB4 LINE L1 3976 4379 -1767 2205 151 42 23 chr6 40567028 40567458 -141847784 + L1MA10 LINE L1 5896 6333 -1 2041 200 34 30 chr6 40567458 40567562 -141847680 + L1MB4 LINE L1 4379 4481 -1665 283 236 0 0 chr6 40567651 40567706 -141847536 - HUERS-P1 LTR ERV1 -728 5535 5481 1957 114 63 0 chr6 40567711 40567982 -141847260 + AluSq SINE Alu 1 288 -25 218 93 0 23 chr6 40567985 40568028 -141847214 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2038 121 37 17 chr6 40568029 40568327 -141846915 + AluSx SINE Alu 1 304 -8 6086 208 78 26 chr6 40568328 40568857 -141846385 + L1MB5 LINE L1 3271 3771 -2375 2597 62 0 10 chr6 40568857 40569165 -141846077 + AluY SINE Alu 1 305 -6 6086 208 78 26 chr6 40569165 40569251 -141845991 + L1MB5 LINE L1 3771 3851 -2295 2047 152 0 9 chr6 40569251 40569566 -141845676 + AluJb SINE Alu 1 312 0 6086 208 78 26 chr6 40569566 40570591 -141844651 + L1MB5 LINE L1 3851 4998 -1148 502 207 6 155 chr6 40570588 40570762 -141844480 + L1MB5 LINE L1 5581 5728 -446 * 1873 183 83 8 chr6 40570852 40571250 -141843992 + L1MB5 LINE L1 5745 6172 -2 312 275 154 13 chr6 40575813 40575962 -141839280 - MIR3 SINE MIR 0 208 39 281 220 51 0 chr6 40576029 40576088 -141839154 + L1ME4a LINE L1 5975 6036 -85 21 0 0 0 chr6 40576116 40576137 -141839105 + AT_rich Low_complexity Low_complexity 1 21 0 2280 109 20 0 chr6 40576244 40576546 -141838696 + AluSq SINE Alu 1 308 -5 963 228 15 10 chr6 40577686 40577888 -141837354 + LTR41 LTR ERVL 3 205 -568 257 174 22 0 chr6 40577899 40577945 -141837297 + LTR41 LTR ERVL 713 759 -14 2027 257 25 94 chr6 40578026 40578203 -141837039 + ERVL LTR ERVL 2848 3036 -2728 1603 168 37 44 chr6 40578203 40578500 -141836742 - AluJo SINE Alu -17 295 1 2027 257 25 94 chr6 40578500 40578512 -141836730 + ERVL LTR ERVL 3036 3047 -2717 1709 166 7 27 chr6 40578512 40578807 -141836435 - AluJo SINE Alu -23 289 1 2027 257 25 94 chr6 40578807 40579327 -141835915 + ERVL LTR ERVL 3047 3509 -2255 4463 166 69 26 chr6 40579335 40579555 -141835687 + L1MB4 LINE L1 4767 4976 -1204 339 24 0 0 chr6 40579555 40579596 -141835646 + L1PA6 LINE L1 6107 6147 -7 4463 166 69 26 chr6 40579596 40579624 -141835618 + L1MB4 LINE L1 4976 5001 -1179 2193 106 3 10 chr6 40579624 40579927 -141835315 + AluSx SINE Alu 12 312 0 4463 166 69 26 chr6 40579927 40580876 -141834366 + L1MB4 LINE L1 5001 6179 -1 26 0 0 0 chr6 40580883 40580909 -141834333 + AT_rich Low_complexity Low_complexity 1 26 0 3413 260 76 29 chr6 40580909 40581364 -141833878 + ERVL LTR ERVL 4287 4719 -1045 1825 195 3 0 chr6 40581364 40581671 -141833571 - AluJb SINE Alu -4 308 1 3413 260 76 29 chr6 40581671 40582311 -141832931 + ERVL LTR ERVL 4719 5433 -331 990 201 68 57 chr6 40582591 40582726 -141832516 + LTR41 LTR ERVL 1 133 -640 2522 207 67 23 chr6 40582726 40583290 -141831952 - MLT1E LTR MaLR -4 589 1 990 201 68 57 chr6 40583290 40583418 -141831824 + LTR41 LTR ERVL 133 267 -506 526 205 26 95 chr6 40583484 40583674 -141831568 + LTR41 LTR ERVL 591 767 -6 339 293 83 8 chr6 40584319 40584452 -141830790 + L2 LINE L2 2323 2465 -849 1721 174 3 29 chr6 40584486 40584796 -141830446 - AluJb SINE Alu -10 302 1 3624 165 26 20 chr6 40584796 40585741 -141829501 + L1MC1 LINE L1 4873 5811 -522 1994 116 0 0 chr6 40585741 40585999 -141829243 + AluSx SINE Alu 38 295 -17 2265 111 0 7 chr6 40585999 40586329 -141828913 + AluSx SINE Alu 1 312 0 3624 165 26 20 chr6 40586329 40586446 -141828796 + L1MC1 LINE L1 5810 5941 -392 842 179 95 18 chr6 40586447 40586615 -141828627 - AluSq SINE Alu -132 181 1 207 250 238 0 chr6 40586620 40586700 -141828542 + L2 LINE L2 2590 2688 -626 327 329 57 73 chr6 40586905 40587276 -141827966 + L2 LINE L2 2904 3268 -4 1828 164 10 30 chr6 40587898 40588196 -141827046 - AluJb SINE Alu -20 292 1 2310 98 0 7 chr6 40588223 40588519 -141826723 + AluSc SINE Alu 1 294 -15 648 247 108 132 chr6 40588813 40588862 -141826380 + MLT1F LTR MaLR 1 50 -492 1368 157 88 48 chr6 40588862 40588987 -141826255 + MER2 DNA MER2_type 1 120 -224 2346 88 20 7 chr6 40588987 40589292 -141825950 - AluSc SINE Alu 0 309 1 1368 157 88 48 chr6 40589292 40589497 -141825745 + MER2 DNA MER2_type 120 344 0 648 247 108 132 chr6 40589497 40589583 -141825659 + MLT1F LTR MaLR 50 136 -406 2360 81 17 0 chr6 40589583 40589880 -141825362 + AluSp SINE Alu 1 302 -11 648 247 108 132 chr6 40589880 40590218 -141825024 + MLT1F LTR MaLR 136 463 -79 1129 172 221 0 chr6 40590218 40590462 -141824780 + AluJo SINE Alu 2 299 -3 648 247 108 132 chr6 40590462 40590541 -141824701 + MLT1F LTR MaLR 463 542 0 504 228 16 0 chr6 40591895 40592022 -141823220 + L1MC5 LINE L1 7797 7925 -36 5785 80 39 28 chr6 40592134 40592984 -141822258 + L1MA3 LINE L1 5447 6305 0 2289 91 13 32 chr6 40592999 40593308 -141821934 + AluSx SINE Alu 1 303 -9 1862 76 106 0 chr6 40596033 40596297 -141818945 + AluSx SINE Alu 3 294 -18 2367 86 3 0 chr6 40596300 40596601 -141818641 + AluSp SINE Alu 1 302 -11 2262 99 3 0 chr6 40597867 40598159 -141817083 + AluSx SINE Alu 1 293 -19 442 117 52 0 chr6 40598203 40598280 -141816962 + FLAM_C SINE Alu 63 143 0 2101 145 0 0 chr6 40598647 40598944 -141816298 - AluJb SINE Alu -15 297 1 367 255 28 0 chr6 40599365 40599471 -141815771 - MIR SINE MIR -57 151 43 553 254 166 60 chr6 40599982 40600380 -141814862 + L2 LINE L2 2873 3312 -1 1140 149 21 54 chr6 40601883 40602125 -141813117 - L1MB4 LINE L1 0 6180 5947 280 236 109 0 chr6 40602966 40603081 -141812161 + MIR SINE MIR 6 133 -75 187 310 0 46 chr6 40603326 40603413 -141811829 - L2 LINE L2 -1005 2309 2227 519 266 106 18 chr6 40603445 40603671 -141811571 - MIR SINE MIR -11 251 6 606 270 68 22 chr6 40603888 40604110 -141811132 - MIR SINE MIR 0 262 31 367 263 106 25 chr6 40604385 40604545 -141810697 + MLT1L LTR MaLR 108 280 -335 228 297 39 39 chr6 40604756 40604884 -141810358 + L2 LINE L2 3144 3271 -1 2567 58 7 0 chr6 40605238 40605546 -141809696 - AluY SINE Alu -1 310 1 537 180 73 20 chr6 40605896 40605912 -141809330 - L1MA10 LINE L1 0 6334 6319 1027 220 108 4 chr6 40605912 40606153 -141809089 - L1ME1 LINE L1 -5 6230 5965 1796 135 46 104 chr6 40606153 40606567 -141808675 - MLT1B LTR MaLR 0 390 1 2719 199 43 0 chr6 40606567 40607130 -141808112 - L1ME1 LINE L1 -261 5972 5386 877 142 0 0 chr6 40607150 40607277 -141807965 + FLAM_C SINE Alu 1 127 -6 2071 139 18 3 chr6 40607282 40607621 -141807621 - L1MC1 LINE L1 0 6333 5990 2211 122 0 16 chr6 40607663 40607975 -141807267 - AluSx SINE Alu -5 307 1 5793 221 84 43 chr6 40607979 40609142 -141806100 - L1ME1 LINE L1 -2782 3433 2318 1815 113 8 0 chr6 40609142 40609408 -141805834 - L1MB2 LINE L1 0 6171 5904 5793 221 84 43 chr6 40609408 40609902 -141805340 - L1ME1 LINE L1 -3897 2318 1845 1930 170 0 13 chr6 40609902 40610214 -141805028 - AluJb SINE Alu -4 308 1 5793 221 84 43 chr6 40610214 40611026 -141804216 - L1ME1 LINE L1 -4370 1845 1067 2272 102 0 19 chr6 40611026 40611341 -141803901 - AluSc SINE Alu 0 309 1 5793 221 84 43 chr6 40611341 40611573 -141803669 - L1ME1 LINE L1 -5148 1067 846 2091 74 93 4 chr6 40611573 40611843 -141803399 + AluY SINE Alu 1 294 -17 5793 221 84 43 chr6 40611843 40611858 -141803384 - L1ME1 LINE L1 -5369 846 833 1718 169 0 36 chr6 40611858 40612165 -141803077 + AluJb SINE Alu 1 296 -16 5793 221 84 43 chr6 40612165 40612672 -141802570 - L1ME1 LINE L1 -5382 833 128 236 217 9 28 chr6 40612678 40612784 -141802458 + CT-rich Low_complexity Low_complexity 3 106 0 344 197 0 0 chr6 40612790 40612851 -141802391 - L1ME1 LINE L1 -6302 94 34 2036 126 36 0 chr6 40612996 40613273 -141801969 + AluSx SINE Alu 1 287 -25 408 20 0 0 chr6 40613273 40613322 -141801920 + (CA)n Simple_repeat Simple_repeat 2 50 0 2021 126 42 0 chr6 40613347 40613632 -141801610 - AluSx SINE Alu -15 297 1 186 43 0 0 chr6 40614226 40614249 -141800993 + (TAA)n Simple_repeat Simple_repeat 2 24 0 806 292 58 12 chr6 40614249 40614492 -141800750 - MIR SINE MIR -8 254 1 220 200 13 107 chr6 40614492 40614542 -141800700 + L2 LINE L2 3229 3271 -1 494 281 79 6 chr6 40615891 40616055 -141799187 + MIR SINE MIR 40 215 -47 216 267 47 127 chr6 40616510 40616660 -141798582 + MIR3 SINE MIR 5 142 -66 604 195 18 18 chr6 40616901 40617014 -141798228 - MER81 DNA DNA -1 113 1 222 331 113 8 chr6 40617124 40617257 -141797985 + MIR3 SINE MIR 35 181 -27 198 0 0 0 chr6 40618320 40618342 -141796900 + (A)n Simple_repeat Simple_repeat 1 22 0 270 308 41 62 chr6 40618376 40618571 -141796671 + MIR SINE MIR 26 216 -46 232 247 39 26 chr6 40618745 40618822 -141796420 + L2 LINE L2 3195 3272 0 382 212 133 40 chr6 40618852 40619003 -141796239 + MIR SINE MIR 21 185 -77 626 257 18 35 chr6 40619016 40619187 -141796055 - MIR SINE MIR -8 254 87 395 269 28 0 chr6 40620441 40620549 -141794693 - MER94 DNA DNA -1 133 23 370 219 0 0 chr6 40620554 40620618 -141794624 - MIR SINE MIR -152 110 47 463 244 92 8 chr6 40621140 40621271 -141793971 - MIR3 SINE MIR -34 174 33 279 296 174 8 chr6 40621490 40621622 -141793620 - L3 LINE CR1 -93 1484 1331 622 268 35 40 chr6 40621730 40621958 -141793284 + MIR SINE MIR 22 248 -14 1739 150 27 20 chr6 40621973 40622273 -141792969 - AluJb SINE Alu -10 302 1 181 333 80 47 chr6 40622276 40622552 -141792690 - L3 LINE CR1 -544 1033 749 519 271 69 0 chr6 40622927 40623071 -141792171 - MIR3 SINE MIR -2 206 53 240 238 74 0 chr6 40623351 40623416 -141791826 - MIR SINE MIR -67 141 70 226 254 0 0 chr6 40623468 40623527 -141791715 + MIR SINE MIR 135 193 -69 947 142 0 9 chr6 40623701 40623928 -141791314 + (CCA)n Simple_repeat Simple_repeat 1 224 0 304 108 62 0 chr6 40623913 40623978 -141791264 + (CACCAT)n Simple_repeat Simple_repeat 3 71 0 * 208 285 50 108 chr6 40624907 40625286 -141789956 - L2 LINE L2 -86 3186 2830 552 299 90 10 chr6 40625404 40625605 -141789637 + MIR SINE MIR 46 262 0 1248 265 29 27 chr6 40625680 40626092 -141789150 - MLT1J LTR MaLR 0 511 99 2372 99 3 0 chr6 40626119 40626422 -141788820 - AluSx SINE Alu -8 304 1 647 188 87 0 chr6 40626423 40626572 -141788670 + MER20 DNA MER1_type 57 218 -1 257 231 46 0 chr6 40626588 40626653 -141788589 - MLT1J LTR MaLR -443 68 1 625 304 52 35 chr6 40627220 40627450 -141787792 - MIR SINE MIR -15 247 14 306 240 13 13 chr6 40627609 40627684 -141787558 - MIR SINE MIR -115 147 73 526 232 177 60 chr6 40628438 40628545 -141786697 + L1MC4 LINE L1 7465 7558 -484 2502 126 21 42 chr6 40628545 40629022 -141786220 + L1MB7 LINE L1 5699 6165 -19 526 232 177 60 chr6 40629022 40629123 -141786119 + L1MC4 LINE L1 7558 7646 -396 2045 129 0 7 chr6 40629123 40629401 -141785841 + AluSx SINE Alu 1 276 -36 526 232 177 60 chr6 40629401 40629575 -141785667 + L1MC4 LINE L1 7646 7893 -149 2465 86 3 0 chr6 40629697 40629998 -141785244 + AluSg SINE Alu 1 302 -8 856 203 101 18 chr6 40629998 40630120 -141785122 + MIR SINE MIR 22 132 -130 297 0 0 0 chr6 40630120 40630153 -141785089 + (ATG)n Simple_repeat Simple_repeat 2 34 0 856 203 101 18 chr6 40630153 40630247 -141784995 + MIR SINE MIR 132 256 -6 295 278 35 17 chr6 40630564 40630679 -141784563 - MIR SINE MIR -69 139 23 467 300 73 0 chr6 40630922 40631072 -141784170 - MIR SINE MIR -98 164 4 1051 206 0 0 chr6 40631178 40631353 -141783889 - FAM SINE Alu 0 175 1 249 227 0 15 chr6 40631354 40631420 -141783822 + Charlie7 DNA MER1_type 2457 2521 -91 383 246 0 36 chr6 40631674 40631784 -141783458 + MLT1L LTR MaLR 387 492 -123 756 264 156 38 chr6 40632440 40632883 -141782359 - MLT1J LTR MaLR -13 498 4 189 321 138 9 chr6 40632909 40633018 -141782224 + MIR3 SINE MIR 10 132 -76 1780 193 92 7 chr6 40634248 40634672 -141780570 - L1ME3A LINE L1 -9 6161 5702 2571 167 45 4 chr6 40634724 40635210 -141780032 - L1MB4 LINE L1 -2 6178 5673 499 323 70 22 chr6 40635217 40635446 -141779796 - MIR SINE MIR -11 251 12 277 313 31 0 chr6 40636184 40636280 -141778962 - L2 LINE L2 -14 3299 3201 398 53 18 0 chr6 40636830 40636887 -141778355 + (TA)n Simple_repeat Simple_repeat 2 59 0 2160 33 4 0 chr6 40636887 40637129 -141778113 - AluSc SINE Alu 0 309 67 413 289 147 33 chr6 40637540 40637934 -141777308 - L1ME LINE L1 -372 5794 5365 506 268 82 55 chr6 40638156 40638339 -141776903 + MIR SINE MIR 63 250 -12 660 191 0 16 chr6 40638502 40638628 -141776614 - MER20 DNA MER1_type -3 216 93 372 71 0 0 chr6 40638629 40638685 -141776557 + (CA)n Simple_repeat Simple_repeat 2 57 0 209 353 9 35 chr6 40638823 40638939 -141776303 + L2 LINE L2 2421 2533 -781 329 159 48 0 chr6 40639130 40639193 -141776049 + L2 LINE L2 3188 3253 -19 280 297 76 62 chr6 40639953 40640098 -141775144 + MIR3 SINE MIR 1 147 -61 24 0 0 0 chr6 40640789 40640813 -141774429 + AT_rich Low_complexity Low_complexity 1 24 0 798 256 115 50 chr6 40640829 40641039 -141774203 - MLT1I LTR MaLR -1 408 213 2006 136 14 7 chr6 40641039 40641334 -141773908 + AluJo SINE Alu 2 298 -14 798 256 115 50 chr6 40641334 40641506 -141773736 - MLT1I LTR MaLR -196 213 1 248 341 131 5 chr6 40641737 40641951 -141773291 - L1MC4a LINE L1 -1884 5924 5684 1944 159 3 10 chr6 40642125 40642421 -141772821 - AluJb SINE Alu -18 294 1 337 346 39 16 chr6 40642433 40642560 -141772682 - L2 LINE L2 0 3272 3143 2545 68 0 13 chr6 40642595 40642902 -141772340 - AluY SINE Alu -8 303 1 188 220 0 68 chr6 40643285 40643344 -141771898 - L2 LINE L2 -841 2473 2419 449 179 0 0 chr6 40643543 40643621 -141771621 + L1ME1 LINE L1 6044 6121 -45 723 149 58 0 chr6 40643625 40643746 -141771496 + MER1B DNA MER1_type 3 130 -167 501 182 0 87 chr6 40643884 40643946 -141771296 - L1ME1 LINE L1 -1 6333 6267 2233 142 21 12 chr6 40643946 40644278 -141770964 - MER1B DNA MER1_type 0 337 3 501 182 0 87 chr6 40644278 40644360 -141770882 - L1ME1 LINE L1 -67 6267 6044 874 272 49 10 chr6 40645084 40645416 -141769826 + L3 LINE CR1 1186 1572 -5 205 287 96 11 chr6 40645456 40645550 -141769692 - L2 LINE L2 -11 3302 3201 358 194 0 0 chr6 40647087 40647149 -141768093 + MIR3 SINE MIR 93 154 -54 2183 134 0 0 chr6 40647955 40648254 -141766988 + AluSg SINE Alu 3 301 -9 407 294 151 5 chr6 40648522 40648740 -141766502 - MIR SINE MIR 0 262 13 2134 131 3 3 chr6 40648850 40649162 -141766080 - AluSx SINE Alu 0 312 1 779 223 57 10 chr6 40649270 40649463 -141765779 - MER58A DNA MER1_type -15 209 8 2365 75 10 3 chr6 40649901 40650195 -141765047 - AluY SINE Alu -15 296 1 849 41 0 0 chr6 40650211 40650308 -141764934 - AluY SINE Alu -214 97 1 373 289 68 79 chr6 40650386 40650723 -141764519 - L1MDa LINE L1 -3427 3113 2781 1641 113 108 0 chr6 40650723 40650954 -141764288 - AluSx SINE Alu -56 256 1 373 289 68 79 chr6 40650954 40651072 -141764170 - L1MDa LINE L1 -3759 2781 2663 344 248 60 53 chr6 40651125 40651258 -141763984 - L1MDa LINE L1 -3963 2577 2444 613 243 185 58 chr6 40651635 40652274 -141762968 - HAL1 LINE L1 -745 1762 1043 975 160 112 0 chr6 40652403 40652591 -141762651 - MER3 DNA MER1_type 0 209 1 2337 92 9 25 chr6 40652993 40653310 -141761932 - AluSx SINE Alu 0 312 1 209 324 122 7 chr6 40654184 40654332 -141760910 - MIR SINE MIR -52 210 46 700 274 22 0 chr6 40654915 40655094 -141760148 - L2 LINE L2 0 3313 3131 2362 103 0 3 chr6 40655125 40655427 -141759815 + AluSq SINE Alu 1 301 -12 324 367 22 22 chr6 40655510 40655736 -141759506 - L2 LINE L2 -388 2926 2701 863 113 14 14 chr6 40655797 40655939 -141759303 + MER20 DNA MER1_type 30 171 -48 281 318 35 0 chr6 40655968 40656053 -141759189 - L2 LINE L2 -608 2706 2619 199 109 0 43 chr6 40658136 40658182 -141757060 + (TTCTCC)n Simple_repeat Simple_repeat 3 46 0 2218 101 0 3 chr6 40658206 40658513 -141756729 - AluY SINE Alu 0 311 1 182 335 145 13 chr6 40658731 40658883 -141756359 + L2 LINE L2 2800 2971 -343 2380 73 6 19 chr6 40659574 40659888 -141755354 + AluSg SINE Alu 1 310 0 570 178 104 6 chr6 40660266 40660429 -141754813 - Charlie2 DNA MER1_type -2 2860 2682 990 83 8 23 chr6 40660429 40660562 -141754680 - AluSg/x SINE Alu -18 294 164 405 334 79 33 chr6 40660596 40660922 -141754320 - L1 LINE L1 -2761 3385 3072 191 283 33 0 chr6 40661838 40661864 -141753378 + L2 LINE L2 3194 3255 -17 220 118 0 0 chr6 40661864 40661898 -141753344 + MIR SINE MIR 218 251 -11 2524 80 3 0 chr6 40662230 40662531 -141752711 + AluSp SINE Alu 1 302 -11 365 267 61 23 chr6 40663900 40664031 -141751211 - L2 LINE L2 -1 3271 3136 1760 162 18 3 chr6 40664142 40664426 -141750816 - AluJo SINE Alu -13 299 12 180 324 43 54 chr6 40664733 40664918 -141750324 - L2 LINE L2 -897 2417 2235 285 323 21 0 chr6 40664920 40665013 -141750229 - L2 LINE L2 -1022 2292 2198 414 294 63 8 chr6 40665101 40665227 -141750015 - MIR SINE MIR -110 152 20 549 299 167 5 chr6 40666537 40666758 -141748484 + MIR SINE MIR 2 258 -4 2158 110 45 0 chr6 40667098 40667390 -141747852 - AluSx SINE Alu -7 305 1 640 261 107 14 chr6 40667435 40667650 -141747592 - MIR SINE MIR 0 262 28 383 323 19 32 chr6 40667679 40667837 -141747405 - MIR SINE MIR -102 160 5 220 260 78 13 chr6 40667845 40667922 -141747320 - MIR SINE MIR -92 170 89 187 250 62 0 chr6 40669064 40669112 -141746130 - MIR3 SINE MIR -10 198 148 204 200 117 33 chr6 40669246 40669306 -141745936 - MIR3 SINE MIR -52 156 92 532 119 10 10 chr6 40670676 40670777 -141744465 + (GGA)n Simple_repeat Simple_repeat 3 103 0 242 267 0 0 chr6 40670785 40670845 -141744397 + GA-rich Low_complexity Low_complexity 2 61 0 27 87 0 0 chr6 40671112 40671181 -141744061 + GC_rich Low_complexity Low_complexity 1 69 0 225 119 0 0 chr6 40674081 40674123 -141741119 + (G)n Simple_repeat Simple_repeat 1 42 0 228 263 152 30 chr6 40677060 40677159 -141738083 + MIR3 SINE MIR 14 124 -84 405 255 21 0 chr6 40678431 40678525 -141736717 + L2 LINE L2 3218 3313 0 1750 184 3 23 chr6 40679763 40680068 -141735174 + AluJo SINE Alu 1 299 -13 598 280 74 37 chr6 40680068 40680311 -141734931 - MIR SINE MIR -5 257 6 433 248 52 52 chr6 40680351 40680504 -141734738 - MER5B DNA MER1_type -25 153 1 2330 118 0 10 chr6 40681204 40681518 -141733724 + AluSx SINE Alu 1 311 -1 807 157 176 0 chr6 40681789 40681942 -141733300 + MER3 DNA MER1_type 20 199 -10 369 289 155 11 chr6 40681994 40682181 -141733061 - MIR SINE MIR -16 246 33 234 333 94 0 chr6 40682674 40682770 -141732472 - MER5A DNA MER1_type -75 114 10 508 258 103 7 chr6 40682952 40683107 -141732135 + MER5B DNA MER1_type 5 174 -4 2385 84 17 0 chr6 40683339 40683635 -141731607 - AluSg SINE Alu -8 302 2 369 218 27 55 chr6 40684663 40684773 -141730469 + MER91A DNA MER1_type 90 196 0 391 296 121 25 chr6 40685007 40685287 -141729955 + L1ME LINE L1 5491 5797 -324 525 313 15 41 chr6 40685894 40685985 -141729257 + MIR SINE MIR 58 150 -112 1459 173 75 44 chr6 40685985 40686280 -141728962 + AluJo SINE Alu 1 304 -8 525 313 15 41 chr6 40686280 40686383 -141728859 + MIR SINE MIR 150 247 -15 192 324 36 54 chr6 40687273 40687384 -141727858 + MIR3 SINE MIR 51 159 -49 572 252 25 44 chr6 40689090 40689249 -141725993 + L2 LINE L2 3112 3267 -5 182 290 62 80 chr6 40689275 40689451 -141725791 + L2 LINE L2 3099 3271 -1 209 311 0 33 chr6 40690679 40690769 -141724473 + CT-rich Low_complexity Low_complexity 4 90 0 204 361 38 8 chr6 40691367 40691500 -141723742 - L3b LINE CR1 -294 1289 1153 752 243 84 17 chr6 40692826 40693065 -141722177 + MIR SINE MIR 7 261 -1 191 344 8 56 chr6 40693740 40693865 -141721377 - L3b LINE CR1 -187 1396 1278 707 224 219 0 chr6 40695331 40695541 -141719701 + MIR SINE MIR 7 262 0 251 122 20 0 chr6 40696434 40696483 -141718759 + GA-rich Low_complexity Low_complexity 1 50 0 337 350 121 6 chr6 40696851 40697008 -141718234 - MER91A DNA MER1_type -21 175 1 678 145 41 43 chr6 40697758 40697952 -141717290 - L1MB1 LINE L1 0 6168 5981 609 262 112 19 chr6 40703163 40703377 -141711865 - MIR SINE MIR 0 262 29 2226 105 7 13 chr6 40703552 40703858 -141711384 + AluSq SINE Alu 1 304 -9 2259 108 0 10 chr6 40704011 40704318 -141710924 + AluSq SINE Alu 1 304 -9 187 238 0 24 chr6 40704623 40704665 -141710577 + MIR SINE MIR 20 60 -148 184 152 0 0 chr6 40704665 40704698 -141710544 + L2 LINE L2 3259 3291 -22 1287 259 189 11 chr6 40704706 40705350 -141709892 - L2 LINE L2 -239 3074 2297 192 77 0 0 chr6 40707567 40707593 -141707649 + (T)n Simple_repeat Simple_repeat 1 26 0 2454 94 10 0 chr6 40708001 40708309 -141706933 - AluSx SINE Alu -1 311 1 21 0 0 0 chr6 40709900 40709921 -141705321 + AT_rich Low_complexity Low_complexity 1 21 0 217 208 83 0 chr6 40710629 40710677 -141704565 - L2 LINE L2 -3 3269 3218 339 145 0 0 chr6 40711206 40711268 -141703974 + Charlie2 DNA MER1_type 72 133 -2649 2136 130 7 0 chr6 40711270 40711569 -141703673 + AluSx SINE Alu 1 301 -11 1347 91 0 0 chr6 40711570 40711745 -141703497 + AluSq SINE Alu 136 310 -3 2461 90 0 0 chr6 40711746 40712047 -141703195 + AluSg SINE Alu 1 301 -9 458 183 52 26 chr6 40712095 40712210 -141703032 + Charlie2 DNA MER1_type 165 282 -2500 2675 202 126 7 chr6 40712231 40713462 -141701780 + Charlie2a DNA MER1_type 902 2313 -549 998 167 90 56 chr6 40713531 40713664 -141701578 + Charlie2a DNA MER1_type 2527 2654 -208 2265 100 7 0 chr6 40713664 40713955 -141701287 - AluSg SINE Alu -17 293 1 998 167 90 56 chr6 40713955 40713980 -141701262 + Charlie2a DNA MER1_type 2654 2677 -185 2085 101 31 14 chr6 40713980 40714266 -141700976 + AluSc SINE Alu 1 291 -18 998 167 90 56 chr6 40714266 40714429 -141700813 + Charlie2a DNA MER1_type 2677 2860 -2 2367 73 6 19 chr6 40714807 40715121 -141700121 - AluSg SINE Alu 0 310 1 440 270 20 20 chr6 40717511 40717663 -141697579 + MIR3 SINE MIR 57 208 0 408 288 171 36 chr6 40717851 40718073 -141697169 + MIR SINE MIR 2 253 -9 275 268 148 86 chr6 40718246 40718455 -141696787 - MIR SINE MIR 0 262 41 483 230 0 0 chr6 40718585 40718672 -141696570 - FLAM_A SINE Alu -55 87 1 1089 209 62 58 chr6 40718801 40719198 -141696044 - MER39 LTR ERV1 -41 666 219 222 360 118 0 chr6 40720526 40720605 -141694637 + L2 LINE L2 3097 3165 -107 2260 128 0 0 chr6 40720605 40720909 -141694333 - AluSx SINE Alu -8 304 1 222 360 118 0 chr6 40720909 40720982 -141694260 + L2 LINE L2 3165 3267 -5 329 255 10 10 chr6 40721332 40721434 -141693808 + L1MC5 LINE L1 7806 7907 -54 180 77 0 0 chr6 40721881 40721907 -141693335 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 2533 267 65 30 chr6 40721910 40722083 -141693159 - L2 LINE L2 -13 3300 3134 2308 116 0 0 chr6 40722083 40722393 -141692849 + AluSx SINE Alu 1 310 -2 2533 267 65 30 chr6 40722393 40723018 -141692224 - L2 LINE L2 -179 3134 2449 1829 107 12 0 chr6 40723018 40723261 -141691981 - AluSg SINE Alu -16 294 49 2533 267 65 30 chr6 40723261 40723480 -141691762 - L2 LINE L2 -864 2449 2239 320 261 104 30 chr6 40723493 40723627 -141691615 + MIR3 SINE MIR 1 144 -64 2545 59 7 0 chr6 40723652 40723957 -141691285 - AluY SINE Alu -4 307 1 1780 145 17 17 chr6 40723966 40724255 -141690987 - AluJb SINE Alu -23 289 1 337 301 78 0 chr6 40724424 40724527 -141690715 - L2 LINE L2 -1 3271 3161 1837 108 126 22 chr6 40725380 40725657 -141689585 + AluSg SINE Alu 1 306 -4 2437 95 0 0 chr6 40725857 40726162 -141689080 + AluSx SINE Alu 1 305 -7 231 264 9 45 chr6 40726601 40726711 -141688531 - 7SK RNA RNA -83 110 5 21 0 0 0 chr6 40726941 40726962 -141688280 + AT_rich Low_complexity Low_complexity 1 21 0 2300 113 7 0 chr6 40726989 40727291 -141687951 - AluSg SINE Alu -6 304 1 2243 96 10 3 chr6 40727422 40727715 -141687527 - AluSc SINE Alu -14 295 1 699 115 0 0 chr6 40727757 40727853 -141687389 + AluSg/x SINE Alu 200 295 -17 989 245 155 28 chr6 40727856 40728211 -141687031 - L1MC4a LINE L1 -1908 5900 5501 2363 96 0 3 chr6 40728251 40728553 -141686689 + AluSx SINE Alu 7 307 -5 1869 153 0 50 chr6 40728665 40728985 -141686257 + AluJo SINE Alu 1 304 -8 1594 162 0 94 chr6 40729019 40729328 -141685914 + AluJo SINE Alu 3 282 -30 405 58 0 0 chr6 40729328 40729380 -141685862 + (TG)n Simple_repeat Simple_repeat 1 52 0 993 194 43 0 chr6 40729499 40729685 -141685557 - AluJo SINE Alu -14 298 105 2363 108 0 6 chr6 40729730 40730044 -141685198 + AluSx SINE Alu 1 312 0 1984 125 0 18 chr6 40730050 40730331 -141684911 - AluSx SINE Alu -36 276 1 1611 127 0 0 chr6 40730359 40730571 -141684671 + AluSg SINE Alu 1 212 -98 712 59 0 0 chr6 40730603 40730688 -141684554 - FLAM_C SINE Alu -32 111 27 891 191 54 0 chr6 40731422 40731590 -141683652 + AluJo SINE Alu 119 295 -17 2385 93 0 7 chr6 40731731 40732033 -141683209 + AluSg SINE Alu 1 300 -10 475 347 32 32 chr6 40732497 40732748 -141682494 + L3b LINE CR1 1114 1364 -219 881 225 41 18 chr6 40732825 40733043 -141682199 + MIR SINE MIR 18 240 -22 186 239 76 65 chr6 40733054 40733146 -141682096 - MIR3 SINE MIR -5 203 111 648 200 123 12 chr6 40733303 40733473 -141681769 - MIR SINE MIR -60 202 14 25 0 0 0 chr6 40733622 40733647 -141681595 + AT_rich Low_complexity Low_complexity 1 25 0 2194 98 26 36 chr6 40733650 40733957 -141681285 - AluSq SINE Alu -9 304 1 773 265 59 17 chr6 40734343 40734581 -141680661 + MIR SINE MIR 8 255 -7 2335 94 10 10 chr6 40734706 40735014 -141680228 - AluY SINE Alu -3 308 1 1967 75 4 0 chr6 40735016 40735255 -141679987 - AluSp SINE Alu -2 311 72 210 362 87 39 chr6 40735762 40735991 -141679251 - L2 LINE L2 -373 2941 2702 2601 68 0 0 chr6 40736277 40736585 -141678657 - AluY SINE Alu -3 308 1 1672 211 10 0 chr6 40736690 40736989 -141678253 - AluJo SINE Alu -10 302 1 846 135 8 0 chr6 40737114 40737240 -141678002 + FRAM SINE Alu 42 168 -8 245 367 50 35 chr6 40737347 40737606 -141677636 - L2 LINE L2 -830 2484 2222 1686 189 3 16 chr6 40738508 40738815 -141676427 + AluJo SINE Alu 1 303 -9 363 239 80 0 chr6 40738878 40738991 -141676251 + MER53 DNA DNA 1 122 -67 705 190 33 0 chr6 40739051 40739172 -141676070 + FLAM_A SINE Alu 1 125 -8 415 118 0 0 chr6 40739228 40739296 -141675946 + MER53 DNA DNA 122 189 0 202 200 0 0 chr6 40740102 40740142 -141675100 + (CA)n Simple_repeat Simple_repeat 1 40 0 426 209 191 0 chr6 40740299 40740409 -141674833 + MER94 DNA DNA 1 131 -3 2402 105 0 6 chr6 40740938 40741252 -141673990 - AluSx SINE Alu 0 312 1 2284 119 0 7 chr6 40741256 40741559 -141673683 - AluSx SINE Alu -11 301 1 2051 163 0 0 chr6 40741559 40741860 -141673382 - AluJb SINE Alu -2 310 10 1110 198 11 48 chr6 40742255 40742523 -141672719 - MIR SINE MIR 0 262 5 723 304 102 45 chr6 40743625 40744261 -141670981 - L2 LINE L2 0 3272 2590 1895 128 37 17 chr6 40745533 40745830 -141669412 + AluJb SINE Alu 1 303 -9 482 267 68 12 chr6 40745943 40746104 -141669138 + MIR3 SINE MIR 38 207 -1 427 264 57 67 chr6 40747744 40747937 -141667305 + MIR3 SINE MIR 3 193 -15 203 305 11 11 chr6 40749299 40749394 -141665848 + C-rich Low_complexity Low_complexity 6 100 0 254 307 27 0 chr6 40750212 40750287 -141664955 + MIR SINE MIR 16 92 -116 462 281 104 18 chr6 40750942 40751106 -141664136 + MIR3 SINE MIR 23 200 -8 324 305 0 11 chr6 40751658 40751753 -141663489 + MIR3 SINE MIR 89 182 -26 357 221 171 13 chr6 40754201 40754354 -141660888 - MIR SINE MIR -48 214 32 327 313 116 48 chr6 40756054 40756322 -141658920 - L3b LINE CR1 -194 1389 1104 1676 197 0 16 chr6 40756880 40757185 -141658057 - AluJo SINE Alu -12 300 1 308 297 102 55 chr6 40757377 40757613 -141657629 + L3b LINE CR1 1174 1420 -163 288 223 179 18 chr6 40758199 40758311 -141656931 + MIR SINE MIR 23 152 -56 2407 104 0 0 chr6 40758586 40758885 -141656357 - AluSx SINE Alu -13 299 1 1804 176 14 3 chr6 40758939 40759228 -141656014 + AluJb SINE Alu 2 293 -19 363 240 83 41 chr6 40759567 40759688 -141655554 - MER5B DNA MER1_type -39 139 14 399 195 35 23 chr6 40759728 40759815 -141655427 + MIR SINE MIR 87 174 -88 212 315 27 0 chr6 40760181 40760254 -141654988 - MIR3 SINE MIR -29 179 105 1222 274 67 47 chr6 40760328 40760573 -141654669 - L2 LINE L2 -5 3308 3069 1491 174 3 93 chr6 40760573 40760709 -141654533 + AluSq SINE Alu 1 93 -220 2206 105 7 3 chr6 40760709 40761004 -141654238 + AluSq SINE Alu 1 296 -17 1491 174 3 93 chr6 40761004 40761023 -141654219 + AluSq SINE Alu 93 292 -21 1130 158 0 0 chr6 40761023 40761188 -141654054 + AluJb SINE Alu 127 291 -21 1222 274 67 47 chr6 40761188 40761519 -141653723 - L2 LINE L2 -244 3069 2737 521 130 0 0 chr6 40761836 40761905 -141653337 + AluJ/FLAM SINE Alu 9 77 -235 337 201 0 2 chr6 40761908 40761972 -141653270 - AluJ/FLAM SINE Alu -242 60 5 1245 136 0 0 chr6 40762005 40762181 -141653061 - AluJb SINE Alu -13 299 124 1045 193 0 0 chr6 40762196 40762372 -141652870 + AluJb SINE Alu 131 306 -6 442 265 151 29 chr6 40762379 40762408 -141652834 - L1ME4a LINE L1 -11 6110 6086 2027 117 3 20 chr6 40762408 40762424 -141652818 - AluSx SINE Alu -18 294 279 204 40 0 0 chr6 40762424 40762449 -141652793 + (TG)n Simple_repeat Simple_repeat 1 25 0 2027 117 3 20 chr6 40762449 40762731 -141652511 - AluSx SINE Alu -33 279 1 2384 102 0 3 chr6 40762738 40763052 -141652190 - AluSq SINE Alu 0 313 1 442 265 151 29 chr6 40763052 40763087 -141652155 - L1ME4a LINE L1 -40 6081 6052 2389 99 0 0 chr6 40763087 40763391 -141651851 + AluSq SINE Alu 1 304 -9 442 265 151 29 chr6 40763391 40763470 -141651772 - L1ME4a LINE L1 -69 6052 5984 360 221 13 0 chr6 40763470 40763547 -141651695 + MER116 DNA Mariner 3 80 0 442 265 151 29 chr6 40763547 40763631 -141651611 - L1ME4a LINE L1 -137 5984 5844 317 294 266 7 chr6 40763661 40763804 -141651438 - MIR SINE MIR -9 253 74 2117 122 0 3 chr6 40763974 40764269 -141650973 + AluSx SINE Alu 1 294 -18 445 179 66 19 chr6 40764460 40764566 -141650676 - MLT1K LTR MaLR 0 588 478 261 273 124 41 chr6 40764807 40764928 -141650314 - L2 LINE L2 -9 3263 3133 277 252 231 27 chr6 40764959 40765106 -141650136 + MIR SINE MIR 36 212 -50 784 139 7 36 chr6 40765107 40765244 -141649998 + FLAM_C SINE Alu 1 133 0 2188 113 0 0 chr6 40765249 40765622 -141649620 + AluSx SINE Alu 1 373 0 404 297 54 14 chr6 40766045 40766193 -141649049 + MIR SINE MIR 1 154 -108 479 207 283 20 chr6 40766201 40766399 -141648843 + MIR SINE MIR 13 262 0 486 266 82 13 chr6 40768707 40768865 -141646377 + MIR3 SINE MIR 31 199 -9 398 95 16 0 chr6 40770118 40770181 -141645061 - L1MB4 LINE L1 -24 6156 6093 7753 139 16 81 chr6 40770194 40770984 -141644258 - L1MA4 LINE L1 -7 6293 5453 2443 96 3 0 chr6 40770984 40771286 -141643956 + AluSq SINE Alu 1 303 -10 7753 139 16 81 chr6 40771286 40772043 -141643199 - L1MA4 LINE L1 -847 5453 4648 919 199 0 6 chr6 40772043 40772214 -141643028 - AluJo SINE Alu -7 305 136 7753 139 16 81 chr6 40772214 40772706 -141642536 - L1MA4 LINE L1 -1652 4648 4126 2297 93 0 50 chr6 40772706 40773027 -141642215 - AluSq SINE Alu -8 305 1 834 144 0 38 chr6 40773027 40773159 -141642083 - AluJo SINE Alu -171 131 5 7753 139 16 81 chr6 40773159 40773634 -141641608 - L1MA4 LINE L1 -2172 4128 3779 1669 179 45 10 chr6 40773633 40774019 -141641223 - L1MB4 LINE L1 -80 6100 5459 * 403 328 93 5 chr6 40774052 40774256 -141640986 + MIR SINE MIR 14 235 -27 542 256 30 0 chr6 40774258 40774391 -141640851 + L2 LINE L2 3177 3313 0 193 216 0 0 chr6 40774893 40774930 -141640312 + MIR SINE MIR 118 154 -108 311 299 0 17 chr6 40775091 40775268 -141639974 + (CAG)n Simple_repeat Simple_repeat 2 175 0 519 259 92 17 chr6 40775781 40775955 -141639287 + MIR SINE MIR 18 204 -58 30 27 0 0 chr6 40776020 40776057 -141639185 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr6 40776081 40776111 -141639131 + AT_rich Low_complexity Low_complexity 1 30 0 651 281 176 1 chr6 40776905 40777127 -141638115 + MIR SINE MIR 1 261 -1 205 156 0 0 chr6 40777393 40777425 -141637817 + MIR SINE MIR 83 114 -148 891 228 22 0 chr6 40778714 40778898 -141636344 + MIR SINE MIR 3 190 -72 340 324 29 0 chr6 40778968 40779070 -141636172 - MIR SINE MIR -71 191 87 254 268 186 0 chr6 40779729 40779826 -141635416 + L2 LINE L2 3158 3272 0 588 212 26 0 chr6 40779924 40780037 -141635205 - FLAM_C SINE Alu -26 117 2 416 198 148 0 chr6 40780039 40780140 -141635102 - L2 LINE L2 -6 3307 3192 1656 141 11 38 chr6 40780252 40780515 -141634727 - AluSx SINE Alu -53 259 4 2208 136 0 13 chr6 40780716 40781032 -141634210 + AluJb SINE Alu 1 312 0 238 86 52 35 chr6 40781071 40781129 -141634113 + T-rich Low_complexity Low_complexity 2 60 0 1097 107 7 0 chr6 40781146 40781286 -141633956 - AluJb SINE Alu -171 141 1 274 120 0 0 chr6 40781300 40781350 -141633892 + Charlie2 DNA MER1_type 2750 2799 -63 1238 189 14 0 chr6 40781351 40781568 -141633674 + AluJo SINE Alu 1 220 -92 22 35 0 0 chr6 40781603 40781632 -141633610 + AT_rich Low_complexity Low_complexity 1 29 0 589 165 0 0 chr6 40781650 40781747 -141633495 + AluJo SINE Alu 209 305 -7 2340 102 3 6 chr6 40781993 40782307 -141632935 - AluSq SINE Alu 0 313 1 22 0 0 0 chr6 40782550 40782572 -141632670 + AT_rich Low_complexity Low_complexity 1 22 0 2493 89 0 0 chr6 40782619 40782921 -141632321 + AluSg SINE Alu 1 302 -8 2506 75 0 0 chr6 40782934 40783227 -141632015 + AluSg SINE Alu 1 293 -17 1042 167 0 23 chr6 40783227 40783401 -141631841 + AluJb SINE Alu 134 303 -9 2553 64 0 6 chr6 40783471 40783784 -141631458 + AluY SINE Alu 1 311 0 234 111 156 0 chr6 40783927 40783972 -141631270 + MIR SINE MIR 95 146 -62 853 268 78 62 chr6 40784739 40785172 -141630070 - LTR67 LTR ERVL -4 553 114 753 197 46 20 chr6 40785176 40785328 -141629914 + AluJb SINE Alu 156 311 -1 276 355 30 10 chr6 40785366 40785566 -141629676 + L3 LINE CR1 1179 1382 -195 2215 114 7 0 chr6 40785582 40785890 -141629352 + AluSx SINE Alu 1 310 -2 255 298 0 0 chr6 40785928 40786012 -141629230 - L1ME4a LINE L1 -65 6056 5973 2070 129 6 10 chr6 40786012 40786323 -141628919 - AluSx SINE Alu 0 312 3 1192 147 0 0 chr6 40786325 40786502 -141628740 - AluSc SINE Alu -14 295 119 2636 119 9 14 chr6 40786626 40787046 -141628196 - LTR51 LTR ERV1 0 671 254 845 121 0 50 chr6 40787047 40787188 -141628054 + FLAM_C SINE Alu 10 143 0 2477 87 3 0 chr6 40787194 40787503 -141627739 + AluSp SINE Alu 1 310 -3 1243 158 47 24 chr6 40787503 40787756 -141627486 - LTR51 LTR ERV1 -412 259 1 722 282 12 2 chr6 40787764 40787992 -141627250 - L1ME4a LINE L1 -287 5834 5603 24 67 0 0 chr6 40788000 40788045 -141627197 + AT_rich Low_complexity Low_complexity 1 45 0 1701 129 8 4 chr6 40788101 40788342 -141626900 - AluY SINE Alu -12 299 58 2362 87 11 0 chr6 40788386 40788673 -141626569 + AluY SINE Alu 1 290 -21 1142 94 0 0 chr6 40788683 40788821 -141626421 + AluSq/x SINE Alu 1 138 -174 31190 82 8 11 chr6 40788823 40793295 -141621947 + L1P LINE L1 16 4476 -1670 1264 93 12 0 chr6 40793295 40793457 -141621785 - AluSg/x SINE Alu -15 295 132 11558 45 23 0 chr6 40793457 40795657 -141619585 - L1PA6 LINE L1 -2 6152 3920 459 108 0 0 chr6 40795658 40795723 -141619519 - MER49 LTR ERV1 -130 793 729 1110 52 0 22 chr6 40795723 40795857 -141619385 - AluY SINE Alu -171 140 10 1025 121 0 0 chr6 40795857 40795998 -141619244 - FLAM_C SINE Alu -1 142 2 2020 125 13 3 chr6 40796000 40796313 -141618929 - MER49 LTR ERV1 -607 316 1 7135 32 13 194 chr6 40796586 40797852 -141617390 + SVA Other Other 11 1047 -339 218 328 0 0 chr6 40798209 40798267 -141616975 + polypurine Low_complexity Low_complexity 2 59 0 2231 116 3 0 chr6 40798279 40798582 -141616660 + AluSx SINE Alu 2 305 -7 463 211 21 0 chr6 40799069 40799164 -141616078 + MIR3 SINE MIR 96 192 -16 24 0 0 0 chr6 40799396 40799420 -141615822 + GC_rich Low_complexity Low_complexity 1 24 0 1488 183 47 18 chr6 40802139 40802413 -141612829 - AluJo SINE Alu -7 305 24 2536 76 0 10 chr6 40802723 40803037 -141612205 - AluY SINE Alu 0 311 1 450 216 135 0 chr6 40804245 40804356 -141610886 + L2 LINE L2 3188 3313 0 180 0 0 0 chr6 40804443 40804463 -141610779 + (TA)n Simple_repeat Simple_repeat 2 21 0 2387 95 0 0 chr6 40804463 40804767 -141610475 - AluSq SINE Alu -9 304 1 2370 110 0 0 chr6 40804767 40805066 -141610176 - AluSq SINE Alu -14 299 1 326 191 155 0 chr6 40805069 40805153 -141610089 - L2 LINE L2 -12 3301 3205 2715 36 0 0 chr6 40805881 40806183 -141609059 - AluY SINE Alu -9 302 1 1393 117 45 9 chr6 40806226 40806448 -141608794 + MER30 DNA MER1_type 1 230 0 467 198 37 0 chr6 40806456 40806537 -141608705 - AluJo SINE Alu -111 201 118 2406 118 0 0 chr6 40806587 40806900 -141608342 - AluSq SINE Alu 0 313 1 2977 172 12 0 chr6 40806900 40807471 -141607771 - L1 LINE L1 -779 5367 4790 2282 106 0 19 chr6 40807471 40807783 -141607459 - AluSx SINE Alu -4 308 3 343 94 21 188 chr6 40807828 40807872 -141607370 - Charlie1 DNA MER1_type 0 2761 2740 2522 75 0 0 chr6 40807872 40808178 -141607064 - AluY SINE Alu 0 311 6 343 94 21 188 chr6 40808178 40808229 -141607013 - Charlie1 DNA MER1_type -21 2740 2682 781 140 21 14 chr6 40808262 40808405 -141606837 - Charlie1 DNA MER1_type -714 2047 1904 1770 176 0 29 chr6 40808408 40808720 -141606522 - AluJo SINE Alu -9 303 1 1685 184 10 19 chr6 40808720 40809029 -141606213 - AluJo SINE Alu -6 306 1 2203 96 0 7 chr6 40809036 40809342 -141605900 - AluSg SINE Alu 0 304 1 306 178 89 10 chr6 40809342 40809443 -141605799 - Charlie1 DNA MER1_type -1101 1660 1552 * 926 235 110 64 chr6 40809433 40809888 -141605354 - MLT1F LTR MaLR -65 477 2 265 273 0 0 chr6 40810161 40810227 -141605015 - L3b LINE CR1 -189 1394 1329 1310 148 106 84 chr6 40810754 40810810 -141604432 + MER47A DNA MER2_type 1 54 -2269 2601 56 3 0 chr6 40810810 40811112 -141604130 + AluY SINE Alu 1 303 -8 1310 148 106 84 chr6 40811112 40811160 -141604082 + MER47A DNA MER2_type 54 99 -2224 2183 106 17 0 chr6 40811160 40811453 -141603789 - AluSq SINE Alu -11 302 5 1310 148 106 84 chr6 40811453 40811705 -141603537 + MER47A DNA MER2_type 99 366 0 765 164 0 8 chr6 40812074 40812196 -141603046 + AluSx SINE Alu 50 170 -142 1647 149 0 0 chr6 40812202 40812437 -141602805 + AluJb SINE Alu 75 309 -3 2629 64 0 0 chr6 40812458 40812769 -141602473 - AluY SINE Alu 0 311 1 345 47 0 0 chr6 40812794 40812837 -141602405 - MER57B LTR ERV1 -66 368 326 1136 174 18 18 chr6 40813415 40813633 -141601609 - MER20 DNA MER1_type -1 218 1 2271 111 7 0 chr6 40814397 40814695 -141600547 - AluSx SINE Alu -12 300 1 2129 182 46 40 chr6 40814841 40815342 -141599900 + MLT1D LTR MaLR 2 505 0 894 259 179 10 chr6 40815653 40816067 -141599175 - L2 LINE L2 -1 3312 2829 789 231 82 0 chr6 40816594 40816789 -141598453 - MIR SINE MIR -40 222 12 386 285 80 13 chr6 40817279 40817430 -141597812 - MIR SINE MIR -82 180 20 243 188 297 50 chr6 40818039 40818140 -141597102 + MIR SINE MIR 134 259 -3 741 167 0 47 chr6 40818224 40818374 -141596868 + FLAM_C SINE Alu 1 143 0 403 333 98 22 chr6 40818846 40819071 -141596171 - L1ME4a LINE L1 -6 6115 5874 298 163 43 33 chr6 40820678 40820770 -141594472 - L1MB7 LINE L1 -2 6176 6084 1860 178 134 10 chr6 40820790 40821290 -141593952 - L1MB7 LINE L1 -25 6159 5598 2000 104 0 19 chr6 40821290 40821559 -141593683 - AluSx SINE Alu -10 302 39 2387 74 23 3 chr6 40821568 40821867 -141593375 - AluSc SINE Alu -4 305 1 433 189 167 77 chr6 40821905 40821983 -141593259 - L1MC4a LINE L1 -1899 5909 5839 2495 67 3 29 chr6 40821983 40822298 -141592944 - AluY SINE Alu -4 307 1 433 189 167 77 chr6 40822298 40822354 -141592888 - L1MC4a LINE L1 -1969 5839 5789 2181 132 3 0 chr6 40822354 40822649 -141592593 - AluSx SINE Alu -16 296 1 433 189 167 77 chr6 40822649 40822735 -141592507 - L1MC4a LINE L1 -2019 5789 5668 541 83 131 0 chr6 40822969 40823053 -141592189 - MLT1F LTR MaLR -1 541 447 282 292 0 14 chr6 40823048 40823120 -141592122 - MLT1F LTR MaLR -465 77 7 * 2136 133 7 0 chr6 40823414 40823708 -141591534 - AluSx SINE Alu -16 296 1 212 341 134 6 chr6 40823709 40823888 -141591354 - MIR SINE MIR -43 219 18 277 217 109 11 chr6 40824308 40824400 -141590842 - MIR SINE MIR -81 181 81 859 242 148 14 chr6 40824400 40824826 -141590416 - MLT1H LTR MaLR 0 549 5 377 286 51 34 chr6 40825273 40825448 -141589794 + MER5B DNA MER1_type 1 178 0 244 184 53 61 chr6 40825968 40826082 -141589160 - L1ME4a LINE L1 -33 6088 5976 1358 233 24 78 chr6 40826147 40826644 -141588598 - L1MB7 LINE L1 -9 6175 5706 278 311 115 33 chr6 40826663 40826785 -141588457 + L2 LINE L2 3159 3290 -23 329 206 58 31 chr6 40826826 40826929 -141588313 - L1MB7 LINE L1 -520 5601 5510 204 318 71 12 chr6 40828008 40828093 -141587149 - L2 LINE L2 -21 3251 3162 378 216 20 39 chr6 40828519 40828621 -141586621 + MLT1C LTR MaLR 1 100 -367 553 259 195 0 chr6 40828836 40829021 -141586221 + MIR SINE MIR 9 229 -33 2365 100 0 3 chr6 40829028 40829337 -141585905 - AluSx SINE Alu -4 308 1 796 256 40 28 chr6 40829585 40829739 -141585503 + MIR SINE MIR 6 166 -96 1608 139 31 90 chr6 40829739 40830127 -141585115 - MLT1A1 LTR MaLR 0 365 1 796 256 40 28 chr6 40830127 40830222 -141585020 + MIR SINE MIR 166 258 -4 1903 176 3 10 chr6 40830516 40830828 -141584414 - AluJb SINE Alu -2 310 1 2640 58 0 3 chr6 40831234 40831543 -141583699 + AluY SINE Alu 1 308 -3 212 332 105 22 chr6 40831581 40831810 -141583432 + L2 LINE L2 2289 2536 -778 301 238 200 0 chr6 40831877 40831982 -141583260 - L1MEd LINE L1 -3873 2256 2131 2480 88 7 0 chr6 40832068 40832374 -141582868 - AluSx SINE Alu -4 308 1 1769 182 3 13 chr6 40832409 40832711 -141582531 - AluJo SINE Alu -13 299 1 376 160 130 0 chr6 40832972 40833072 -141582170 - L1MD3 LINE L1 -5 7990 7878 394 278 101 56 chr6 40833072 40833270 -141581972 - L1MEd LINE L1 -4902 1217 1011 271 259 90 37 chr6 40833270 40833459 -141581783 - L1MEd LINE L1 -5325 794 596 2446 81 0 0 chr6 40833598 40833895 -141581347 + AluY SINE Alu 2 298 -13 443 311 59 0 chr6 40834361 40834496 -141580746 + MIR SINE MIR 1 143 -119 2344 90 0 0 chr6 40834730 40835020 -141580222 - AluSc SINE Alu -19 290 1 2357 100 7 0 chr6 40835951 40836260 -141578982 - AluSq SINE Alu -2 311 1 236 263 59 102 chr6 40836331 40836449 -141578793 - L2 LINE L2 -19 3294 3182 325 381 78 19 chr6 40836560 40836830 -141578412 - L3 LINE CR1 -1269 308 23 501 270 85 30 chr6 40837045 40837245 -141577997 - MLT1J LTR MaLR -102 409 199 2174 120 3 19 chr6 40837335 40837652 -141577590 - AluJb SINE Alu 0 312 1 180 353 74 25 chr6 40837652 40837774 -141577468 + MIR SINE MIR 122 249 -13 687 217 210 66 chr6 40838233 40838675 -141576567 - MLT1J LTR MaLR -4 507 2 327 261 101 0 chr6 40839623 40839742 -141575500 + MIR SINE MIR 84 214 -48 240 143 0 0 chr6 40839748 40839790 -141575452 + (TTA)n Simple_repeat Simple_repeat 1 42 0 3327 89 19 115 chr6 40840181 40841465 -141573777 + SVA Other Other 322 868 -520 7219 58 8 43 chr6 40841530 40842519 -141572723 + SVA Other Other 433 1386 0 207 0 0 0 chr6 40843174 40843197 -141572045 + (T)n Simple_repeat Simple_repeat 1 23 0 1138 168 0 0 chr6 40843203 40843370 -141571872 + FRAM SINE Alu 1 167 -9 300 286 32 84 chr6 40844429 40844572 -141570670 - L1MC4a LINE L1 -1851 5957 5821 2359 117 0 0 chr6 40844572 40844880 -141570362 - AluSx SINE Alu -4 308 1 2129 122 7 0 chr6 40845290 40845578 -141569664 + AluSx SINE Alu 1 290 -22 196 286 118 17 chr6 40845710 40845829 -141569413 - L2 LINE L2 -2 3270 3140 273 163 0 0 chr6 40845837 40845886 -141569356 + L1ME3 LINE L1 5933 5981 -181 912 143 6 56 chr6 40845890 40846051 -141569191 + FRAM SINE Alu 1 153 -23 334 221 23 161 chr6 40846055 40846157 -141569085 + L1ME3 LINE L1 5975 6033 -129 2451 92 0 3 chr6 40846157 40846471 -141568771 - AluSq SINE Alu 0 313 1 334 221 23 161 chr6 40846471 40846585 -141568657 + L1ME3 LINE L1 6033 6161 -1 210 143 0 0 chr6 40847532 40847567 -141567675 + (A)n Simple_repeat Simple_repeat 1 35 0 1774 171 6 19 chr6 40847599 40847914 -141567328 + AluJo SINE Alu 1 311 -1 416 209 0 0 chr6 40848134 40848225 -141567017 - L1MC4 LINE L1 -26 8016 7926 * 498 270 35 13 chr6 40848222 40848415 -141566827 - L1MC4 LINE L1 -359 7636 7347 182 373 0 0 chr6 40848567 40848642 -141566600 + MIR SINE MIR 33 107 -101 476 288 14 7 chr6 40848655 40848794 -141566448 - MIR SINE MIR -121 141 2 2162 125 0 39 chr6 40851347 40851658 -141563584 + AluSx SINE Alu 1 299 -13 400 297 27 21 chr6 40851730 40851925 -141563317 - MIR SINE MIR -56 206 11 389 361 30 6 chr6 40852045 40852211 -141563031 + L3 LINE CR1 656 825 -752 185 246 82 0 chr6 40852397 40852458 -141562784 + L3 LINE CR1 1156 1221 -356 630 234 153 5 chr6 40852610 40852819 -141562423 + MIR SINE MIR 2 241 -21 2598 74 0 0 chr6 40853051 40853362 -141561880 - AluY SINE Alu 0 311 1 25 31 0 0 chr6 40853375 40853407 -141561835 + AT_rich Low_complexity Low_complexity 1 32 0 2289 112 0 0 chr6 40853407 40853702 -141561540 + AluY SINE Alu 1 295 -16 499 132 0 0 chr6 40853703 40853779 -141561463 - FLAM_A SINE Alu -27 115 40 1900 248 181 25 chr6 40854527 40855651 -141559591 - L2 LINE L2 -83 3230 1939 1987 142 14 3 chr6 40855690 40855979 -141559263 + AluSx SINE Alu 1 292 -20 2313 112 10 0 chr6 40855979 40856282 -141558960 + AluSx SINE Alu 1 306 -6 1748 158 24 31 chr6 40856282 40856573 -141558669 + AluSx SINE Alu 1 289 -23 730 204 12 18 chr6 40856665 40856832 -141558410 - L1ME4a LINE L1 -263 5858 5693 309 98 0 0 chr6 40857287 40857328 -141557914 - tRNA-Lys-AAG tRNA tRNA -34 42 2 2233 132 7 0 chr6 40857376 40857680 -141557562 + AluJb SINE Alu 1 306 -6 224 202 64 75 chr6 40857942 40858036 -141557206 - MIR3 SINE MIR -8 200 108 257 360 60 5 chr6 40858193 40858393 -141556849 + L2 LINE L2 2605 2815 -499 253 176 0 59 chr6 40858625 40858676 -141556566 + L2 LINE L2 3266 3313 0 467 296 30 12 chr6 40858982 40859151 -141556091 - L1ME4a LINE L1 -10 6111 5940 251 238 95 9 chr6 40860119 40860224 -141555018 - MIR SINE MIR -13 249 136 338 263 0 12 chr6 40860405 40860485 -141554757 - L2 LINE L2 0 3313 3235 808 228 74 0 chr6 40861023 40861212 -141554030 + MIR SINE MIR 6 208 -54 423 0 0 0 chr6 40861812 40861859 -141553383 + (TG)n Simple_repeat Simple_repeat 2 48 0 1834 134 73 0 chr6 40861918 40862193 -141553049 - AluSx SINE Alu -13 299 5 2316 98 3 0 chr6 40862491 40862786 -141552456 - AluSx SINE Alu -14 298 3 1958 147 17 0 chr6 40862788 40863081 -141552161 - AluSx SINE Alu -14 298 1 784 120 3 14 chr6 40864410 40864575 -141550667 + L1PA3 LINE L1 6032 6168 0 21 36 0 0 chr6 40864615 40864643 -141550599 + AT_rich Low_complexity Low_complexity 1 28 0 444 317 91 41 chr6 40864862 40865281 -141549961 - MLT1J LTR MaLR -71 440 1 271 267 99 37 chr6 40865450 40865611 -141549631 - Charlie8 DNA MER1_type -2132 285 115 886 204 158 11 chr6 40865630 40865890 -141549352 - L1MD3 LINE L1 -15 7980 7683 29 0 0 0 chr6 40866052 40866081 -141549161 + AT_rich Low_complexity Low_complexity 1 29 0 1748 171 10 3 chr6 40866081 40866390 -141548852 + AluJo SINE Alu 1 311 -1 1127 140 17 0 chr6 40866425 40866604 -141548638 - L1PA13 LINE L1 -14 6149 5968 680 179 26 39 chr6 40866662 40866818 -141548424 + MER5B DNA MER1_type 11 164 -14 242 353 48 12 chr6 40866839 40867006 -141548236 - L2 LINE L2 -831 2483 2311 304 232 139 88 chr6 40868170 40868364 -141546878 + MIR SINE MIR 2 205 -57 2128 121 0 7 chr6 40868784 40869089 -141546153 - AluSx SINE Alu -9 303 1 2094 104 17 7 chr6 40870540 40870837 -141544405 - AluSx SINE Alu -12 300 1 596 311 62 9 chr6 40870842 40871067 -141544175 + L1MC4a LINE L1 5603 5839 -1969 235 293 35 35 chr6 40871368 40871484 -141543758 + MIR SINE MIR 23 138 -70 326 288 54 0 chr6 40871986 40872097 -141543145 - L2 LINE L2 -6 3266 3150 1973 137 54 61 chr6 40872603 40872637 -141542605 - MLT2D LTR ERVL 0 414 381 225 0 0 0 chr6 40872637 40872662 -141542580 + (TG)n Simple_repeat Simple_repeat 2 26 0 1973 137 54 61 chr6 40872662 40872958 -141542284 - MLT2D LTR ERVL -33 381 85 2247 75 39 13 chr6 40872958 40873263 -141541979 + AluSq SINE Alu 1 313 0 1973 137 54 61 chr6 40873263 40873341 -141541901 - MLT2D LTR ERVL -329 85 8 279 226 38 75 chr6 40873354 40873460 -141541782 + MIR SINE MIR 95 196 -66 207 214 0 0 chr6 40873722 40873764 -141541478 + T-rich Low_complexity Low_complexity 1 42 0 1776 130 0 83 chr6 40873809 40874162 -141541080 - AluJb SINE Alu 0 312 1 1304 170 130 30 chr6 40874162 40874432 -141540810 - AluJo SINE Alu -5 297 1 1935 70 0 27 chr6 40874432 40874688 -141540554 - AluSc SINE Alu -60 249 1 286 257 128 46 chr6 40875370 40875479 -141539763 - L2 LINE L2 -87 3226 3109 299 278 67 0 chr6 40876818 40876908 -141538334 - MIR SINE MIR -107 155 60 2320 101 0 0 chr6 40877678 40877985 -141537257 - AluSx SINE Alu -5 307 1 1083 82 0 0 chr6 40877986 40878121 -141537121 - AluSq/x SINE Alu -177 135 1 2171 82 0 7 chr6 40878169 40878495 -141536747 - AluSq SINE Alu 0 327 4 217 217 43 0 chr6 40878913 40878959 -141536283 + MIR SINE MIR 212 259 -3 382 229 229 34 chr6 40879680 40879794 -141535448 - MIR SINE MIR -2 260 170 1965 122 6 42 chr6 40879794 40880105 -141535137 + AluJo SINE Alu 1 300 -12 2265 92 3 16 chr6 40880105 40880420 -141534822 + AluSx SINE Alu 1 311 -1 382 229 229 34 chr6 40880420 40880509 -141534733 - MIR SINE MIR -91 171 16 197 229 104 0 chr6 40880551 40880599 -141534643 - L2 LINE L2 -58 3255 3203 2272 88 0 3 chr6 40881849 40882146 -141533096 + AluSx SINE Alu 1 296 -16 553 279 209 0 chr6 40882248 40882463 -141532779 - MIR SINE MIR -1 261 2 313 362 0 7 chr6 40883100 40883252 -141531990 + CT-rich Low_complexity Low_complexity 1 151 0 439 279 58 6 chr6 40885521 40885693 -141529549 - LTR33A LTR ERVL -13 510 330 273 343 145 0 chr6 40885965 40886131 -141529111 - LTR50 LTR ERVL -605 190 1 2533 73 14 4 chr6 40886407 40886977 -141528265 - LTR10E LTR ERV1 0 633 1 422 249 122 22 chr6 40887234 40887415 -141527827 - MIR SINE MIR -49 213 15 225 196 0 0 chr6 40887533 40887589 -141527653 + L1MC3 LINE L1 7722 7777 -8 2438 66 0 0 chr6 40887597 40887902 -141527340 + AluY SINE Alu 1 305 -6 1837 152 30 3 chr6 40887929 40888232 -141527010 + AluSx SINE Alu 1 311 -1 2225 108 0 0 chr6 40888235 40888542 -141526700 - AluSx SINE Alu -5 307 1 2186 105 3 3 chr6 40888679 40888984 -141526258 + AluSc SINE Alu 1 305 -4 336 279 59 29 chr6 40889020 40889156 -141526086 + L1ME LINE L1 5494 5633 -537 864 249 144 88 chr6 40889186 40889595 -141525647 + LTR16A LTR ERVL 19 450 0 1801 110 3 43 chr6 40889695 40889815 -141525427 + AluJo SINE Alu 6 129 -183 1872 113 3 57 chr6 40889815 40890145 -141525097 - AluSq SINE Alu 0 314 1 1801 110 3 43 chr6 40890145 40890322 -141524920 + AluJo SINE Alu 129 292 -20 772 226 99 69 chr6 40890430 40890462 -141524780 + L1MC/D LINE L1 5254 5284 -2524 2337 96 0 0 chr6 40890462 40890774 -141524468 + AluSq SINE Alu 1 312 -1 772 226 99 69 chr6 40890774 40890866 -141524376 + L1MC/D LINE L1 5284 5372 -2436 2273 96 3 6 chr6 40890866 40891180 -141524062 + AluSq SINE Alu 1 313 0 772 226 99 69 chr6 40891180 40891234 -141524008 + L1MC/D LINE L1 5372 5423 -2385 1760 168 10 0 chr6 40891234 40891532 -141523710 - AluJo SINE Alu -11 301 1 772 226 99 69 chr6 40891532 40891713 -141523529 + L1MC/D LINE L1 5423 5626 -2182 240 256 15 131 chr6 40891937 40892074 -141523168 - MIR3 SINE MIR -3 205 85 250 257 0 14 chr6 40892123 40892193 -141523049 - MIR SINE MIR -23 239 171 270 326 62 0 chr6 40892195 40892339 -141522903 - LTR67 LTR ERVL -2 555 403 272 260 87 19 chr6 40893779 40893883 -141521359 - MIR3 SINE MIR -22 186 76 257 270 40 0 chr6 40893981 40894055 -141521187 + L2 LINE L2 3201 3277 -36 1996 117 31 0 chr6 40894361 40894652 -141520590 - AluSx SINE Alu -12 300 1 296 183 113 0 chr6 40895288 40895359 -141519883 + MER103 DNA DNA 15 93 -73 1409 187 4 0 chr6 40895408 40895649 -141519593 + AluJb SINE Alu 1 242 -70 330 111 0 19 chr6 40895713 40895767 -141519475 + MER50 LTR ERV1 502 554 -180 2264 106 6 0 chr6 40895810 40896121 -141519121 - AluSq SINE Alu 0 313 1 368 254 42 0 chr6 40896584 40896702 -141518540 - Charlie2 DNA MER1_type -8 2854 2732 2372 89 0 0 chr6 40896702 40897005 -141518237 - AluSg SINE Alu -7 303 1 1755 143 59 3 chr6 40897218 40897504 -141517738 - AluJo SINE Alu -10 302 1 2259 77 3 13 chr6 40897552 40897850 -141517392 - AluSp SINE Alu -18 295 1 569 146 0 0 chr6 40897877 40897959 -141517283 - AluSp/q SINE Alu -15 298 217 501 192 10 10 chr6 40897972 40898071 -141517171 + MER96B DNA MER1_type? 319 417 0 204 267 0 0 chr6 40898537 40898582 -141516660 + G-rich Low_complexity Low_complexity 6 50 0 667 269 81 40 chr6 40898589 40898772 -141516470 - MIR SINE MIR -3 259 64 779 182 156 0 chr6 40898772 40898926 -141516316 - MER45A DNA AcHobo 0 178 1 667 269 81 40 chr6 40898926 40898965 -141516277 - MIR SINE MIR -198 64 28 2252 90 7 0 chr6 40899038 40899339 -141515903 - AluSp SINE Alu -10 303 1 244 306 88 112 chr6 40899358 40899410 -141515832 - MIR SINE MIR -77 185 133 1892 138 21 0 chr6 40899410 40899699 -141515543 - AluSq SINE Alu -18 295 1 244 306 88 112 chr6 40899699 40899816 -141515426 - MIR SINE MIR -129 133 20 739 241 116 10 chr6 40900648 40900847 -141514395 + MIR SINE MIR 36 255 -7 2251 104 0 0 chr6 40900852 40901159 -141514083 - AluSg SINE Alu -3 307 1 1530 155 121 0 chr6 40901232 40901555 -141513687 - L1MB7 LINE L1 0 6184 5823 2332 74 0 13 chr6 40901555 40901864 -141513378 - AluY SINE Alu -6 305 1 838 136 15 0 chr6 40901865 40901997 -141513245 - AluJb SINE Alu -178 134 1 471 223 0 0 chr6 40901998 40902092 -141513150 - MER33 DNA MER1_type -228 96 3 2032 93 4 0 chr6 40902117 40902387 -141512855 - AluSg SINE Alu -17 293 23 2159 105 7 0 chr6 40902391 40902685 -141512557 - AluSx SINE Alu -16 296 1 2331 84 3 0 chr6 40903628 40903927 -141511315 + AluSq SINE Alu 1 300 -13 2030 158 71 45 chr6 40904538 40904606 -141510636 - Tigger2a DNA MER2_type -2274 434 369 1760 120 52 0 chr6 40904606 40904899 -141510343 - AluJb SINE Alu 0 307 1 2030 158 71 45 chr6 40904899 40905252 -141509990 - Tigger2a DNA MER2_type -2339 369 1 259 250 0 0 chr6 40905365 40905421 -141509821 - MIR SINE MIR -89 173 118 2099 101 10 7 chr6 40905421 40905729 -141509513 + AluJb SINE Alu 1 309 -3 2091 117 0 7 chr6 40905729 40906028 -141509214 + AluSq SINE Alu 1 297 -16 1916 145 0 0 chr6 40906038 40906367 -141508875 + AluSx SINE Alu 12 312 0 519 187 84 65 chr6 40906406 40906561 -141508681 - MER91B DNA MER1_type -32 158 1 221 212 8 136 chr6 40906822 40906940 -141508302 - MER91B DNA MER1_type -87 103 1 390 235 13 3 chr6 40907477 40907631 -141507611 - Charlie1b DNA MER1_type -323 200 6 501 262 331 0 chr6 40907969 40908415 -141506827 + L2 LINE L2 2714 3308 -5 279 256 128 8 chr6 40909885 40910018 -141505224 - Charlie7 DNA MER1_type -17 2595 2447 893 234 134 21 chr6 40910060 40910584 -141504658 - Charlie7 DNA MER1_type -1941 671 56 301 190 38 13 chr6 40910731 40910810 -141504432 + Charlie4 DNA MER1_type 1822 1902 -59 2022 121 13 26 chr6 40910913 40911226 -141504016 - AluSg SINE Alu -1 309 1 364 355 54 16 chr6 40911736 40911922 -141503320 - L2 LINE L2 -1 3271 3079 2007 141 0 10 chr6 40912163 40912469 -141502773 - AluSx SINE Alu -9 303 1 2303 81 7 0 chr6 40913376 40913671 -141501571 - AluSp SINE Alu -16 297 1 1671 136 37 20 chr6 40913985 40914279 -141500963 - AluJo SINE Alu -13 299 1 547 222 56 0 chr6 40915498 40915624 -141499618 - FLAM_A SINE Alu -9 133 1 1953 138 0 14 chr6 40915627 40915943 -141499299 - AluSx SINE Alu 0 312 1 1985 115 4 4 chr6 40916992 40917270 -141497972 - AluSx SINE Alu -30 282 5 1508 146 86 8 chr6 40917781 40918049 -141497193 - AluSg SINE Alu -16 294 6 820 113 60 15 chr6 40918049 40918182 -141497060 - AluJb SINE Alu -173 139 1 301 325 13 13 chr6 40918329 40918486 -141496756 - L1MC4a LINE L1 -1841 5967 5811 2490 57 0 0 chr6 40918506 40918805 -141496437 - AluY SINE Alu -12 299 1 500 269 25 44 chr6 40918808 40918968 -141496274 + MIR SINE MIR 102 258 -4 2261 95 3 0 chr6 40918970 40919264 -141495978 - AluSx SINE Alu -16 296 2 608 314 26 5 chr6 40919421 40919612 -141495630 - MIR SINE MIR -48 214 20 2206 127 0 0 chr6 40919877 40920185 -141495057 + AluSg SINE Alu 1 308 -2 262 328 135 51 chr6 40920251 40920522 -141494720 - L2 LINE L2 -1 3312 2986 2127 77 20 34 chr6 40920522 40920820 -141494422 - AluSg SINE Alu -14 296 3 262 328 135 51 chr6 40920820 40920999 -141494243 - L2 LINE L2 -327 2986 2824 21 36 0 0 chr6 40921051 40921079 -141494163 + AT_rich Low_complexity Low_complexity 1 28 0 2508 55 3 0 chr6 40921088 40921395 -141493847 - AluY SINE Alu -3 308 1 830 129 0 0 chr6 40921395 40921511 -141493731 - AluJo/FLAM SINE Alu -196 116 1 571 221 6 87 chr6 40921512 40921584 -141493658 - MIR SINE MIR -37 225 149 2489 52 0 7 chr6 40921584 40921892 -141493350 - AluY SINE Alu -5 306 1 571 221 6 87 chr6 40921892 40921991 -141493251 - MIR SINE MIR -113 149 68 222 37 0 0 chr6 40922018 40922045 -141493197 + (TATG)n Simple_repeat Simple_repeat 4 30 0 2048 105 0 11 chr6 40922050 40922335 -141492907 - AluSx SINE Alu -30 282 1 270 359 56 20 chr6 40922530 40922725 -141492517 - L2 LINE L2 -545 2769 2568 241 310 13 39 chr6 40922737 40922892 -141492350 + MIR SINE MIR 112 262 0 1461 172 61 20 chr6 40923415 40923711 -141491531 - AluJb SINE Alu -4 308 1 1945 90 90 0 chr6 40923963 40924241 -141491001 - AluSx SINE Alu -9 303 1 312 232 112 24 chr6 40926661 40926786 -141488456 - MIR SINE MIR -101 161 26 638 213 140 0 chr6 40928000 40928150 -141487092 - AluSp SINE Alu -16 297 127 2000 87 28 7 chr6 40928313 40928601 -141486641 - AluY SINE Alu -17 294 1 884 148 35 0 chr6 40928650 40928792 -141486450 + AluSg/x SINE Alu 134 280 -32 226 252 138 41 chr6 40929286 40929409 -141485833 + MIR3 SINE MIR 36 170 -38 297 100 100 14 chr6 40929422 40929526 -141485716 + MER53 DNA DNA 1 169 -20 2076 91 10 42 chr6 40929688 40929996 -141485246 - AluY SINE Alu -13 298 1 189 0 0 0 chr6 40930488 40930509 -141484733 + (T)n Simple_repeat Simple_repeat 1 21 0 22 70 0 0 chr6 40930583 40930626 -141484616 + AT_rich Low_complexity Low_complexity 1 43 0 362 283 131 0 chr6 40933369 40933468 -141481774 - MER91A DNA MER1_type -83 113 2 328 248 0 88 chr6 40933505 40933642 -141481600 - L1ME4a LINE L1 -54 6067 5943 2201 105 7 0 chr6 40933683 40933979 -141481263 - AluSq SINE Alu -15 298 1 1612 152 6 54 chr6 40934697 40935013 -141480229 - AluJo SINE Alu -11 301 1 295 195 166 3 chr6 40935542 40935625 -141479617 + MIR SINE MIR 33 129 -79 2306 102 0 0 chr6 40935731 40936036 -141479206 - AluSg SINE Alu -5 305 1 226 207 0 35 chr6 40936985 40937043 -141478199 + GA-rich Low_complexity Low_complexity 2 57 0 21 0 0 0 chr6 40937236 40937257 -141477985 + GC_rich Low_complexity Low_complexity 1 21 0 783 164 33 0 chr6 40937363 40937485 -141477757 - FLAM_A SINE Alu -6 127 2 544 234 76 63 chr6 40937558 40937716 -141477526 + MER91A DNA MER1_type 1 160 -36 624 259 146 14 chr6 40938414 40938634 -141476608 - MIR SINE MIR -1 261 13 2117 87 4 4 chr6 40938847 40939122 -141476120 - AluSx SINE Alu -16 296 22 780 213 0 0 chr6 40939488 40939624 -141475618 + AluJo SINE Alu 1 136 -176 197 277 191 0 chr6 40939926 40940020 -141475222 + L2 LINE L2 3202 3313 0 239 361 57 10 chr6 40940370 40940564 -141474678 + L2 LINE L2 2549 2751 -563 472 297 28 0 chr6 40940664 40940809 -141474433 + MIR SINE MIR 63 211 -51 391 311 4 114 chr6 40940833 40941113 -141474129 + L2 LINE L2 2936 3184 -88 357 207 107 95 chr6 40943739 40943908 -141471334 + MIR SINE MIR 79 249 -13 1835 157 6 13 chr6 40943997 40944132 -141471110 + AluSx SINE Alu 1 135 -177 2219 100 10 0 chr6 40944132 40944432 -141470810 + AluSg SINE Alu 3 305 -5 1835 157 6 13 chr6 40944432 40944609 -141470633 + AluSx SINE Alu 135 311 -1 2053 78 0 109 chr6 40945568 40945915 -141469327 - AluSg SINE Alu -1 309 1 1093 236 5 0 chr6 40946019 40946227 -141469015 - MIR SINE MIR -21 241 33 25 0 0 0 chr6 40946593 40946618 -141468624 + AT_rich Low_complexity Low_complexity 1 25 0 634 127 103 56 chr6 40946627 40946753 -141468489 + AluSq/x SINE Alu 5 136 -177 22 0 0 0 chr6 40947071 40947093 -141468149 + GC_rich Low_complexity Low_complexity 1 22 0 221 279 13 57 chr6 40948180 40948338 -141466904 + (CAGAGA)n Simple_repeat Simple_repeat 6 156 0 563 105 0 0 chr6 40950047 40950133 -141465109 - L1MB4 LINE L1 -1 6179 6094 268 240 248 16 chr6 40951910 40952031 -141463211 - MIR3 SINE MIR -21 187 39 24 53 0 0 chr6 40953768 40953806 -141461436 + GC_rich Low_complexity Low_complexity 1 38 0 241 279 41 23 chr6 40953848 40954020 -141461222 + (CGGGG)n Simple_repeat Simple_repeat 5 179 0 964 206 94 14 chr6 40956182 40956405 -141458837 + MIR SINE MIR 13 253 -9 242 282 39 0 chr6 40956439 40956517 -141458725 + MIR3 SINE MIR 76 156 -52 187 258 32 16 chr6 40957535 40957597 -141457645 + L2 LINE L2 3029 3091 -181 1033 223 133 62 chr6 40958064 40958084 -141457158 + L2 LINE L2 2696 2713 -600 1526 171 43 46 chr6 40958084 40958388 -141456854 + AluJb SINE Alu 2 304 -8 2147 134 0 0 chr6 40958388 40958695 -141456547 + AluSx SINE Alu 1 307 -5 1033 223 133 62 chr6 40958695 40959014 -141456228 + L2 LINE L2 2713 3008 -305 2149 118 0 16 chr6 40959014 40959047 -141456195 - AluSg SINE Alu 0 310 278 198 0 0 0 chr6 40959047 40959069 -141456173 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2149 118 0 16 chr6 40959069 40959349 -141455893 - AluSg SINE Alu -32 278 2 2024 112 3 16 chr6 40959353 40959657 -141455585 - AluSq SINE Alu -13 300 1 1033 223 133 62 chr6 40959657 40959786 -141455456 + L2 LINE L2 3010 3128 -185 2380 49 0 3 chr6 40959786 40960096 -141455146 - AluY SINE Alu 0 309 1 1033 223 133 62 chr6 40960096 40960195 -141455047 + L2 LINE L2 3128 3310 -3 1722 126 0 89 chr6 40960896 40961222 -141454020 + AluJb SINE Alu 5 301 -11 633 264 13 77 chr6 40961239 40961416 -141453826 + MIR SINE MIR 41 201 -61 2236 78 3 23 chr6 40961416 40961724 -141453518 - AluY SINE Alu -9 302 1 633 264 13 77 chr6 40961724 40961781 -141453461 + MIR SINE MIR 201 260 -2 2048 138 0 3 chr6 40961791 40962095 -141453147 - AluSx SINE Alu -9 303 1 387 303 110 0 chr6 40962220 40962329 -141452913 - L2 LINE L2 0 3313 3193 340 213 43 32 chr6 40962330 40962424 -141452818 + MER5A DNA MER1_type 9 103 -86 502 257 68 0 chr6 40963285 40963433 -141451809 + MIR SINE MIR 7 164 -98 665 238 48 42 chr6 40963453 40963642 -141451600 - MIR SINE MIR -13 249 60 1941 201 56 71 chr6 40963843 40964376 -141450866 + MLT1F LTR MaLR 18 542 0 2037 129 3 35 chr6 40964662 40964979 -141450263 - AluSq SINE Alu -6 307 1 189 330 55 33 chr6 40966291 40966382 -141448860 - MIR SINE MIR -138 124 32 1312 91 23 0 chr6 40966914 40967089 -141448153 - AluSg/x SINE Alu -10 302 124 321 159 0 0 chr6 40967807 40967870 -141447372 + CT-rich Low_complexity Low_complexity 2 64 0 248 229 114 69 chr6 40968214 40968345 -141446897 + MIR SINE MIR 33 169 -93 267 31 0 0 chr6 40968835 40968872 -141446370 + (CCCCAA)n Simple_repeat Simple_repeat 1 69 0 267 31 0 0 chr6 40968872 40968904 -141446338 + (CCCCAA)n Simple_repeat Simple_repeat 3 34 0 230 156 0 22 chr6 40969576 40969621 -141445621 + C-rich Low_complexity Low_complexity 3 46 0 2151 125 0 22 chr6 40970085 40970220 -141445022 + AluSq SINE Alu 1 138 -175 2278 85 4 0 chr6 40970220 40970524 -141444718 + AluY SINE Alu 1 305 0 2151 125 0 22 chr6 40970524 40970700 -141444542 + AluSq SINE Alu 138 306 -7 431 190 0 0 chr6 40970771 40970850 -141444392 - AluSp/q SINE Alu -14 299 221 335 239 162 44 chr6 40970901 40971166 -141444076 + L2 LINE L2 2727 3014 -258 1757 169 44 0 chr6 40971312 40971607 -141443635 + AluJo SINE Alu 1 308 -4 642 280 44 93 chr6 40971657 40971939 -141443303 - L2 LINE L2 -6 3307 3013 1985 121 44 0 chr6 40971939 40972236 -141443006 - AluSx SINE Alu 0 309 1 642 280 44 93 chr6 40972236 40972248 -141442994 - L2 LINE L2 -300 3013 3002 2232 98 0 54 chr6 40972248 40972565 -141442677 - AluSq SINE Alu -13 300 1 642 280 44 93 chr6 40972565 40972599 -141442643 - L2 LINE L2 -311 3002 2968 2365 94 0 7 chr6 40972599 40972897 -141442345 - AluSq SINE Alu -17 296 1 642 280 44 93 chr6 40972897 40972993 -141442249 - L2 LINE L2 -345 2968 2901 483 247 66 47 chr6 40972993 40973104 -141442138 + Zaphod DNA AcHobo 1 108 -777 2457 96 3 0 chr6 40973104 40973416 -141441826 + AluSq SINE Alu 1 313 0 483 247 66 47 chr6 40973416 40973557 -141441685 + Zaphod DNA AcHobo 108 257 -628 996 158 24 12 chr6 40973557 40973721 -141441521 + AluJb SINE Alu 136 301 -11 2453 208 123 26 chr6 40973724 40974072 -141441170 + Zaphod DNA AcHobo 252 565 -3466 1959 143 3 17 chr6 40974072 40974373 -141440869 - AluJb SINE Alu -15 297 1 2453 208 123 26 chr6 40974373 40974484 -141440758 + Zaphod DNA AcHobo 565 664 -3367 2379 93 6 13 chr6 40974484 40974796 -141440446 + AluSx SINE Alu 1 310 -2 2453 208 123 26 chr6 40974796 40975067 -141440175 + Zaphod DNA AcHobo 664 1054 -2977 2359 99 3 3 chr6 40975078 40975391 -141439851 + AluSq SINE Alu 1 313 0 543 272 12 25 chr6 40975601 40975660 -141439582 + MARNA DNA Mariner 208 266 -320 838 132 0 22 chr6 40975660 40975796 -141439446 + AluJo SINE Alu 1 133 -169 543 272 12 25 chr6 40975796 40975898 -141439344 + MARNA DNA Mariner 266 367 -219 347 180 0 0 chr6 40975996 40976057 -141439185 - MIR SINE MIR -139 123 63 444 323 12 24 chr6 40976139 40976306 -141438936 + MIR SINE MIR 94 258 -4 186 294 20 0 chr6 40976300 40976351 -141438891 - MIR SINE MIR -98 164 113 * 201 253 53 21 chr6 40976819 40976914 -141438328 - MIR SINE MIR -141 121 24 251 232 134 24 chr6 40976978 40977060 -141438182 - L2 LINE L2 -41 3231 3141 2338 86 7 3 chr6 40977129 40977433 -141437809 + AluSq SINE Alu 5 309 -4 2021 159 0 3 chr6 40977443 40977738 -141437504 + AluSx SINE Alu 1 294 -18 428 216 21 10 chr6 40978247 40978344 -141436898 - L2 LINE L2 -5 3308 3211 336 178 0 41 chr6 40978702 40978775 -141436467 - MIR SINE MIR -13 249 180 1033 180 0 6 chr6 40978775 40978953 -141436289 + AluJo SINE Alu 128 304 -8 193 333 58 0 chr6 40978955 40979042 -141436200 - MIR SINE MIR -85 177 86 438 261 150 0 chr6 40979256 40979409 -141435833 + MER5B DNA MER1_type 1 176 -2 521 294 38 12 chr6 40979456 40979616 -141435626 + MIR SINE MIR 44 207 -55 808 101 8 31 chr6 40980297 40980426 -141434816 + FLAM_C SINE Alu 1 126 -7 2281 104 7 0 chr6 40980432 40980729 -141434513 + AluSx SINE Alu 1 299 -13 238 226 48 0 chr6 40980765 40980827 -141434415 - MIR SINE MIR -67 141 77 2919 119 50 25 chr6 40980905 40980963 -141434279 + L1MB3 LINE L1 5612 5667 -516 2526 47 0 13 chr6 40980963 40981261 -141433981 + AluY SINE Alu 1 294 -17 2919 119 50 25 chr6 40981261 40981721 -141433521 + L1MB3 LINE L1 5667 6143 -40 687 152 8 32 chr6 40981721 40981846 -141433396 + AluJb SINE Alu 2 123 -189 307 85 0 0 chr6 40981846 40981893 -141433349 + L1MB3 LINE L1 6127 6173 -10 378 0 0 0 chr6 40981932 40981974 -141433268 + (CA)n Simple_repeat Simple_repeat 2 43 0 2451 86 0 7 chr6 40981997 40982300 -141432942 - AluSx SINE Alu -11 301 1 478 140 0 30 chr6 40982306 40982406 -141432836 - AluJ/FRAM SINE Alu 0 312 216 252 0 0 0 chr6 40982426 40982454 -141432788 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 719 153 0 0 chr6 40982454 40982572 -141432670 - FLAM_C SINE Alu -25 118 1 2320 113 3 0 chr6 40982761 40983072 -141432170 + AluSx SINE Alu 1 312 0 2234 99 0 0 chr6 40983235 40983541 -141431701 - AluY SINE Alu 0 306 1 1650 153 0 16 chr6 40983713 40983962 -141431280 + AluJb SINE Alu 1 245 -67 1916 133 46 7 chr6 40984218 40984503 -141430739 - AluJb SINE Alu -16 296 1 330 248 203 0 chr6 40984645 40984798 -141430444 + L2 LINE L2 780 963 -2351 1134 318 51 42 chr6 40984799 40985293 -141429949 + MLT1K LTR MaLR 17 514 -74 2286 99 0 0 chr6 40985344 40985652 -141429590 - AluSq SINE Alu 0 308 1 2502 86 0 3 chr6 40985677 40985990 -141429252 - AluSx SINE Alu 0 312 1 2472 67 3 0 chr6 40986001 40986298 -141428944 - AluSp SINE Alu -15 298 1 1876 175 7 0 chr6 40986381 40986690 -141428552 + AluJb SINE Alu 1 311 -1 637 229 92 25 chr6 40986721 40986961 -141428281 - L1ME3A LINE L1 -10 6160 5905 29 0 0 0 chr6 40986961 40986990 -141428252 + AT_rich Low_complexity Low_complexity 1 29 0 1082 158 6 0 chr6 40987011 40987176 -141428066 - FRAM SINE Alu -12 164 1 2341 101 3 13 chr6 40987186 40987502 -141427740 - AluSp SINE Alu 0 313 1 1741 188 30 3 chr6 40987509 40987813 -141427429 - AluJb SINE Alu 0 312 1 365 264 82 31 chr6 40987813 40987972 -141427270 - L1M4 LINE L1 -1093 5053 4887 2152 123 7 0 chr6 40987983 40988300 -141426942 - AluSx SINE Alu 0 312 1 2086 118 4 0 chr6 40988400 40988679 -141426563 + AluSx SINE Alu 1 280 -32 291 28 0 0 chr6 40988679 40988715 -141426527 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2257 124 3 0 chr6 40988727 40989033 -141426209 + AluSx SINE Alu 1 307 -5 233 252 61 10 chr6 40989036 40989139 -141426103 - MER5B DNA MER1_type -56 133 20 222 37 0 0 chr6 40989500 40989527 -141425715 + (TG)n Simple_repeat Simple_repeat 2 28 0 1900 147 0 48 chr6 40989528 40989841 -141425401 - AluJo SINE Alu -14 298 1 2215 108 3 0 chr6 40990094 40990381 -141424861 + AluSx SINE Alu 1 288 -24 293 307 0 24 chr6 40990412 40990539 -141424703 - L1 LINE L1 -1129 5017 4894 1571 194 31 7 chr6 40990540 40990828 -141424414 + AluJo SINE Alu 1 295 -17 803 196 6 18 chr6 40990878 40991046 -141424196 - FRAM SINE Alu 0 166 1 973 242 216 28 chr6 40991325 40991630 -141423612 + L2 LINE L2 40 286 -3028 180 0 0 0 chr6 40991630 40991650 -141423592 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 973 242 216 28 chr6 40991650 40991829 -141423413 + L2 LINE L2 286 430 -2884 1561 159 69 31 chr6 40991829 40992119 -141423123 + AluJo SINE Alu 1 301 -11 973 242 216 28 chr6 40992119 40992281 -141422961 + L2 LINE L2 430 809 -2505 1082 221 93 71 chr6 40992535 40992835 -141422407 - MLT1H LTR MaLR -37 512 195 1981 134 3 52 chr6 40992835 40993164 -141422078 + AluSq SINE Alu 1 313 0 1082 221 93 71 chr6 40993164 40993357 -141421885 - MLT1H LTR MaLR -354 195 8 3166 296 60 72 chr6 40993361 40993660 -141421582 + ERVL LTR ERVL 1139 1440 -4324 2264 115 0 7 chr6 40993660 40993964 -141421278 + AluSx SINE Alu 1 302 -10 3166 296 60 72 chr6 40993964 40994021 -141421221 + ERVL LTR ERVL 1440 1496 -4268 2525 75 7 0 chr6 40994021 40994326 -141420916 - AluSp SINE Alu -6 307 1 3166 296 60 72 chr6 40994326 40995008 -141420234 + ERVL LTR ERVL 1496 2185 -3579 1991 145 3 26 chr6 40995008 40995311 -141419931 + AluSx SINE Alu 1 296 -16 2464 99 0 3 chr6 40995312 40995625 -141419617 + AluSx SINE Alu 1 312 0 3166 296 60 72 chr6 40995625 40995833 -141419409 + ERVL LTR ERVL 2185 2394 -3370 1715 159 15 4 chr6 40995833 40996104 -141419138 - AluJo SINE Alu -11 301 28 3166 296 60 72 chr6 40996104 40996598 -141418644 + ERVL LTR ERVL 2394 2863 -2901 240 278 0 0 chr6 40996710 40996764 -141418478 + MER58A DNA MER1_type 1 54 -170 3050 171 31 76 chr6 40996970 40997395 -141417847 - L1M4 LINE L1 -1059 5087 4713 2147 148 0 0 chr6 40997395 40997698 -141417544 - AluSx SINE Alu -9 303 1 3050 171 31 76 chr6 40997698 40998071 -141417171 - L1M4 LINE L1 -1433 4713 4325 726 131 0 0 chr6 40998073 40998180 -141417062 - FLAM_A SINE Alu -12 130 24 325 215 38 0 chr6 40998202 40998281 -141416961 - L1M4 LINE L1 -1814 4332 4251 472 268 79 21 chr6 40998290 40998414 -141416828 + MLT1J LTR MaLR 65 205 -306 2436 87 0 3 chr6 40998414 40998714 -141416528 - AluSx SINE Alu -13 299 1 472 268 79 21 chr6 40998714 40998779 -141416463 + MLT1J LTR MaLR 205 265 -246 565 158 79 7 chr6 40999364 40999380 -141415862 - L1ME2 LINE L1 -271 5893 5880 2446 86 0 9 chr6 40999380 40999695 -141415547 - AluSx SINE Alu 0 312 1 565 158 79 7 chr6 40999695 40999830 -141415412 - L1ME2 LINE L1 -284 5880 5731 2309 114 0 3 chr6 40999838 41000146 -141415096 - AluSx SINE Alu -5 307 1 820 164 8 8 chr6 41000146 41000280 -141414962 - AluJo SINE Alu -178 134 1 643 249 36 6 chr6 41000362 41000527 -141414715 + MER5B DNA MER1_type 9 178 0 2244 100 3 13 chr6 41000767 41001066 -141414176 - AluSx SINE Alu -11 301 6 202 192 14 14 chr6 41001880 41001953 -141413289 + G-rich Low_complexity Low_complexity 3 75 0 1576 183 98 161 chr6 41002424 41002693 -141412549 + MER97a DNA MER1_type? 8 292 -602 2130 146 3 0 chr6 41002693 41003002 -141412240 - AluSx SINE Alu -2 310 1 1576 183 98 161 chr6 41003002 41003042 -141412200 + MER97a DNA MER1_type? 292 333 -561 1084 87 6 12 chr6 41003042 41003203 -141412039 + L1PA10 LINE L1 6003 6162 -6 1576 183 98 161 chr6 41003203 41003540 -141411702 + MER97a DNA MER1_type? 333 582 -312 618 172 0 97 chr6 41003540 41003633 -141411609 - FLAM_A SINE Alu -169 133 57 2242 139 3 0 chr6 41003633 41003943 -141411299 - AluSx SINE Alu -1 311 1 618 172 0 97 chr6 41003943 41003994 -141411248 - FLAM_A SINE Alu -245 57 3 1576 183 98 161 chr6 41003994 41004267 -141410975 + MER97a DNA MER1_type? 582 871 -23 287 338 90 21 chr6 41004362 41004838 -141410404 - HAL1b LINE L1 -708 640 102 989 194 26 133 chr6 41005031 41005217 -141410025 - AluYb8 SINE Alu 0 308 104 2115 119 0 14 chr6 41005217 41005510 -141409732 - AluSg SINE Alu -21 289 1 989 194 26 133 chr6 41005510 41005533 -141409709 - AluYb8 SINE Alu -204 104 80 1710 189 10 3 chr6 41005533 41005824 -141409418 - AluJo SINE Alu -19 293 1 989 194 26 133 chr6 41005824 41005958 -141409284 - AluYb8 SINE Alu -228 80 1 2302 116 0 6 chr6 41005970 41006281 -141408961 - AluSx SINE Alu -2 310 2 26 0 0 0 chr6 41006321 41006347 -141408895 + AT_rich Low_complexity Low_complexity 1 26 0 653 211 0 23 chr6 41006459 41006592 -141408650 - AluJb SINE Alu -181 131 2 3985 210 62 9 chr6 41006703 41007175 -141408067 + L1M4 LINE L1 714 1160 -5486 631 144 64 40 chr6 41007175 41007300 -141407942 + FLAM_A SINE Alu 1 128 -5 3985 210 62 9 chr6 41007300 41007794 -141407448 + L1M4 LINE L1 1160 1726 -4920 1983 144 7 10 chr6 41007794 41007929 -141407313 + AluSx SINE Alu 1 135 -177 2404 91 0 35 chr6 41007929 41008248 -141406994 + AluSg1 SINE Alu 1 308 -1 1983 144 7 10 chr6 41008248 41008410 -141406832 + AluSx SINE Alu 135 297 -15 3985 210 62 9 chr6 41008410 41008524 -141406718 + L1M4 LINE L1 1726 1833 -4813 238 31 0 0 chr6 41008526 41008558 -141406684 + L1M4 LINE L1 1911 1942 -4704 252 0 0 0 chr6 41008572 41008600 -141406642 + (A)n Simple_repeat Simple_repeat 1 28 0 944 201 9 147 chr6 41008600 41008948 -141406294 + AluJo SINE Alu 2 301 -1 712 234 5 0 chr6 41008954 41009159 -141406083 + L1 LINE L1 3028 3233 -2913 978 247 47 23 chr6 41009212 41009700 -141405542 - MLT1G1 LTR MaLR -4 545 1 2263 99 3 0 chr6 41009818 41010123 -141405119 - AluSp SINE Alu 0 306 1 456 254 40 0 chr6 41010222 41010348 -141404894 + MIR SINE MIR 9 139 -123 2210 125 3 0 chr6 41010626 41010922 -141404320 - AluSx SINE Alu -15 297 1 241 303 161 7 chr6 41011037 41011192 -141404050 + L1 LINE L1 4800 4978 -1168 2274 121 20 0 chr6 41011246 41011551 -141403691 + AluSx SINE Alu 1 311 -1 564 277 115 69 chr6 41011551 41012056 -141403186 + HAL1 LINE L1 11 538 -1969 320 224 0 13 chr6 41012082 41012158 -141403084 + HAL1 LINE L1 650 724 -1783 816 141 0 15 chr6 41012174 41012309 -141402933 - FLAM_C SINE Alu 0 133 1 499 306 107 13 chr6 41012322 41012673 -141402569 + L1P3 LINE L1 5377 5772 -382 1790 150 11 7 chr6 41013176 41013450 -141401792 - AluJo SINE Alu -31 281 7 2289 96 0 38 chr6 41013456 41013795 -141401447 - AluY SINE Alu 0 327 1 648 209 0 22 chr6 41013798 41013932 -141401310 - AluJo/FLAM SINE Alu -170 132 2 732 269 207 20 chr6 41014000 41014454 -141400788 - LTR67 LTR ERVL -12 545 7 2405 108 0 6 chr6 41014455 41014770 -141400472 + AluSq SINE Alu 1 313 0 2086 119 7 10 chr6 41014995 41015298 -141399944 + AluJo SINE Alu 1 302 -10 2342 107 7 13 chr6 41015682 41015991 -141399251 + AluSx SINE Alu 1 307 -5 2096 137 3 0 chr6 41016168 41016468 -141398774 - AluJo SINE Alu -11 301 1 8225 51 11 2 chr6 41016577 41017575 -141397667 - LTR13 LTR ERVK 0 1007 1 2183 166 21 30 chr6 41017699 41017736 -141397506 + L1M3 LINE L1 5291 5327 -844 1591 199 34 0 chr6 41017736 41018027 -141397215 + AluJo SINE Alu 2 302 -10 2183 166 21 30 chr6 41018027 41018417 -141396825 + L1M3 LINE L1 5327 5714 -457 5648 274 70 67 chr6 41018420 41021361 -141393881 - LTR10B-int LTR ERV1 -147 6502 3551 3039 239 60 23 chr6 41021340 41022562 -141392680 - LTR10B-int LTR ERV1 -4135 2514 986 * 1004 247 88 47 chr6 41022628 41022996 -141392246 - LTR10B-int LTR ERV1 -6768 1017 588 2063 70 0 37 chr6 41022996 41023267 -141391975 - AluY SINE Alu -9 302 42 1004 247 88 47 chr6 41023267 41023363 -141391879 - LTR10B-int LTR ERV1 -7197 588 497 1426 219 80 6 chr6 41023363 41023688 -141391554 - LTR10B-int LTR ERV1 -6297 352 4 3411 112 22 16 chr6 41023688 41024189 -141391053 - LTR10B LTR ERV1 0 505 2 1467 101 48 10 chr6 41024189 41024397 -141390845 + AluSg/x SINE Alu 84 299 -13 308 158 0 0 chr6 41024398 41024455 -141390787 + L1MB2 LINE L1 6112 6168 -3 2356 84 0 0 chr6 41025040 41025327 -141389915 - AluY SINE Alu -24 287 1 1941 154 0 3 chr6 41025329 41025628 -141389614 - AluJo SINE Alu -14 298 1 2342 97 0 0 chr6 41026855 41027154 -141388088 - AluY SINE Alu -11 300 2 2335 101 0 3 chr6 41027457 41027763 -141387479 + AluSq SINE Alu 1 305 -8 480 239 51 0 chr6 41027791 41027908 -141387334 + MLT2E LTR ERVL 19 141 -487 1813 153 3 33 chr6 41027910 41028217 -141387025 - AluJo SINE Alu -14 298 1 1879 150 18 4 chr6 41029203 41029483 -141385759 - AluJb SINE Alu -28 284 1 2357 112 7 0 chr6 41030043 41030347 -141384895 - AluSx SINE Alu -6 306 1 22 35 0 0 chr6 41031157 41031186 -141384056 + AT_rich Low_complexity Low_complexity 1 29 0 1595 190 18 7 chr6 41033248 41033527 -141381715 + AluJb SINE Alu 1 282 -30 24 0 0 0 chr6 41033532 41033556 -141381686 + GC_rich Low_complexity Low_complexity 1 24 0 509 83 56 0 chr6 41033557 41033629 -141381613 - MADE1 DNA Mariner -4 76 1 528 299 65 53 chr6 41034238 41034632 -141380610 + L1M4 LINE L1 4559 4962 -1184 2253 99 7 3 chr6 41034632 41034934 -141380308 + AluSx SINE Alu 1 303 -9 528 299 65 53 chr6 41034934 41035014 -141380228 + L1M4 LINE L1 4962 5039 -1107 28 29 0 0 chr6 41035015 41035050 -141380192 + AT_rich Low_complexity Low_complexity 1 35 0 852 120 15 15 chr6 41035055 41035188 -141380054 - FRAM SINE Alu -23 153 21 2050 141 3 3 chr6 41035345 41035649 -141379593 + AluSx SINE Alu 2 305 -7 948 193 0 59 chr6 41035750 41035999 -141379243 + AluJo SINE Alu 2 296 -16 22 0 0 0 chr6 41036630 41036652 -141378590 + AT_rich Low_complexity Low_complexity 1 22 0 2322 89 0 13 chr6 41037385 41037699 -141377543 - AluSg SINE Alu 0 310 1 866 206 6 12 chr6 41037848 41038008 -141377234 - MER58A DNA MER1_type 0 159 1 330 65 48 0 chr6 41038100 41038162 -141377080 + (TA)n Simple_repeat Simple_repeat 1 65 0 1915 112 65 0 chr6 41038183 41038443 -141376799 + AluSx SINE Alu 1 277 -35 315 0 0 0 chr6 41038446 41038481 -141376761 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1415 162 63 86 chr6 41039155 41039538 -141375704 + MLT1A2 LTR MaLR 1 374 0 975 148 0 0 chr6 41039803 41039945 -141375297 + FRAM SINE Alu 5 146 -30 1358 154 23 5 chr6 41040412 41040626 -141374616 + MER20 DNA MER1_type 2 219 0 194 236 83 28 chr6 41042285 41042357 -141372885 - MIR3 SINE MIR -6 202 127 21 57 0 0 chr6 41042485 41042520 -141372722 + AT_rich Low_complexity Low_complexity 1 35 0 311 191 191 43 chr6 41042537 41042652 -141372590 + MER112 DNA MER1_type 8 139 -121 842 150 0 0 chr6 41043343 41043476 -141371766 + FLAM_C SINE Alu 1 133 0 279 301 16 57 chr6 41043554 41043677 -141371565 - L2 LINE L2 -5 3267 3150 2259 72 43 4 chr6 41044870 41045171 -141370071 - AluSp SINE Alu 0 314 3 1930 161 0 16 chr6 41045458 41045762 -141369480 - AluJb SINE Alu -11 301 3 776 123 25 16 chr6 41045775 41045897 -141369345 - FLAM_C SINE Alu -18 125 3 372 191 0 0 chr6 41045898 41045987 -141369255 + (TA)n Simple_repeat Simple_repeat 1 89 0 2263 113 0 0 chr6 41045987 41046287 -141368955 - AluSx SINE Alu -12 300 1 2000 138 0 10 chr6 41046874 41047171 -141368071 + AluJo SINE Alu 1 294 -18 231 211 125 67 chr6 41048876 41048980 -141366262 + L2 LINE L2 3187 3296 -17 1057 194 27 40 chr6 41049562 41049784 -141365458 + MER20 DNA MER1_type 1 219 0 193 255 196 29 chr6 41050248 41050350 -141364892 - MIR SINE MIR -112 150 32 2295 83 10 13 chr6 41050411 41050713 -141364529 - AluSx SINE Alu -11 301 1 1644 151 52 11 chr6 41050930 41051201 -141364041 + AluJo SINE Alu 1 282 -30 222 300 22 11 chr6 41051459 41051549 -141363693 + (CATA)n Simple_repeat Simple_repeat 2 92 0 375 238 67 0 chr6 41051909 41052014 -141363228 - MIR SINE MIR -71 191 80 2029 131 3 13 chr6 41052323 41052621 -141362621 + AluJb SINE Alu 1 295 -17 2179 109 3 0 chr6 41052931 41053216 -141362026 + AluSx SINE Alu 1 286 -26 2119 117 0 7 chr6 41055091 41055381 -141359861 - AluSx SINE Alu -24 288 1 2129 102 16 23 chr6 41055549 41055879 -141359363 + AluSx SINE Alu 1 312 0 202 146 167 0 chr6 41056090 41056138 -141359104 + MIR3 SINE MIR 150 205 -3 439 53 0 18 chr6 41056353 41056410 -141358832 - U6 snRNA snRNA -51 56 1 1818 176 58 0 chr6 41056739 41057068 -141358174 - MER7A DNA MER2_type 0 346 1 1010 155 12 6 chr6 41057124 41057285 -141357957 + FRAM SINE Alu 1 157 -19 21 0 0 0 chr6 41058527 41058548 -141356694 + AT_rich Low_complexity Low_complexity 1 21 0 435 275 66 6 chr6 41059823 41060005 -141355237 + MIR SINE MIR 33 225 -37 198 0 0 0 chr6 41060007 41060029 -141355213 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 2060 114 0 54 chr6 41060549 41060864 -141354378 - AluSx SINE Alu -14 298 1 1718 163 3 10 chr6 41060866 41061167 -141354075 - AluJo SINE Alu -13 299 1 227 311 18 18 chr6 41061460 41061624 -141353618 - L1M4 LINE L1 -3863 2283 2120 2417 59 24 0 chr6 41061651 41061941 -141353301 - AluY SINE Alu -14 297 1 1171 169 14 86 chr6 41062136 41062242 -141353000 + L1 LINE L1 3916 4028 -2118 2007 159 0 6 chr6 41062242 41062556 -141352686 - AluJo SINE Alu 0 312 1 1171 169 14 86 chr6 41062556 41062739 -141352503 + L1 LINE L1 4028 4184 -1962 * 2438 147 81 31 chr6 41062735 41063234 -141352008 + L1PA16 LINE L1 4950 5479 -687 2605 60 0 10 chr6 41063234 41063548 -141351694 + AluY SINE Alu 1 311 0 2438 147 81 31 chr6 41063548 41063797 -141351445 + L1PA16 LINE L1 5479 5714 -452 2183 116 10 0 chr6 41063803 41064096 -141351146 - AluSx SINE Alu -16 296 1 1405 170 107 0 chr6 41064098 41064351 -141350891 - AluJo SINE Alu -21 291 12 487 98 43 8 chr6 41064369 41064447 -141350795 + L1PA16 LINE L1 5706 5781 -373 2101 151 40 8 chr6 41064857 41065228 -141350014 + L1PA16 LINE L1 5769 6151 -15 1439 190 30 30 chr6 41065269 41065569 -141349673 + AluJo SINE Alu 1 300 -12 1666 147 71 4 chr6 41065649 41065946 -141349296 - AluSx SINE Alu 0 315 1 854 295 149 55 chr6 41066141 41066820 -141348422 - HAL1 LINE L1 -857 1650 908 232 281 53 0 chr6 41066990 41067047 -141348195 - L2 LINE L2 -8 3305 3246 2524 68 0 7 chr6 41067143 41067450 -141347792 + AluY SINE Alu 1 305 -6 201 71 0 89 chr6 41067513 41067569 -141347673 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 620 167 81 63 chr6 41067626 41067800 -141347442 - MER5B DNA MER1_type -1 177 1 287 167 33 0 chr6 41068907 41068967 -141346275 - L2 LINE L2 -787 2527 2466 1866 132 4 0 chr6 41068967 41069225 -141346017 + AluSx SINE Alu 1 259 -53 2349 112 21 21 chr6 41069389 41069764 -141345478 - THE1C LTR MaLR 0 375 1 335 300 0 20 chr6 41069790 41069890 -141345352 - MIR SINE MIR -112 150 53 2264 112 0 3 chr6 41070062 41070374 -141344868 - AluSx SINE Alu -1 311 1 1860 173 6 16 chr6 41070739 41071052 -141344190 - AluJo SINE Alu -2 310 1 1658 183 116 66 chr6 41071101 41071701 -141343541 + L1MD3 LINE L1 5980 6549 -1446 2138 106 0 3 chr6 41071701 41071985 -141343257 + AluSg SINE Alu 1 283 -27 1658 183 116 66 chr6 41071985 41072014 -141343228 + L1MD3 LINE L1 6549 6575 -1420 279 0 0 0 chr6 41072014 41072045 -141343197 + (CA)n Simple_repeat Simple_repeat 2 32 0 1658 183 116 66 chr6 41072045 41072889 -141342353 + L1MD3 LINE L1 6575 7743 -252 2287 117 0 7 chr6 41072889 41073198 -141342044 + AluSx SINE Alu 1 307 -5 1658 183 116 66 chr6 41073198 41073454 -141341788 + L1MD3 LINE L1 7743 7985 -10 24 0 0 0 chr6 41073602 41073626 -141341616 + AT_rich Low_complexity Low_complexity 1 24 0 366 274 96 13 chr6 41073801 41073958 -141341284 - MIR3 SINE MIR -10 198 29 1032 187 0 6 chr6 41074180 41074351 -141340891 - FAM SINE Alu -5 170 1 271 389 89 0 chr6 41074507 41074664 -141340578 - L2 LINE L2 0 3272 3102 182 133 33 0 chr6 41074795 41074825 -141340417 - MIR SINE MIR -138 70 40 438 258 117 6 chr6 41074924 41075087 -141340155 + MIR SINE MIR 50 230 -32 189 354 97 18 chr6 41075095 41075208 -141340034 + L2 LINE L2 3187 3308 -5 1649 179 10 24 chr6 41075238 41075534 -141339708 - AluJb SINE Alu -20 292 1 2196 110 0 3 chr6 41075562 41075854 -141339388 - AluSx SINE Alu -21 291 1 22 0 0 0 chr6 41077279 41077301 -141337941 + AT_rich Low_complexity Low_complexity 1 22 0 1447 137 11 102 chr6 41077334 41077618 -141337624 + AluJo SINE Alu 30 287 -25 2290 93 17 0 chr6 41078203 41078494 -141336748 + AluSx SINE Alu 5 300 -12 1640 130 29 76 chr6 41078546 41078861 -141336381 + AluJb SINE Alu 1 300 -12 1638 199 0 13 chr6 41079085 41079386 -141335856 + AluJo SINE Alu 1 297 -15 21 0 0 0 chr6 41079512 41079533 -141335709 + AT_rich Low_complexity Low_complexity 1 21 0 807 248 12 79 chr6 41079632 41079819 -141335423 + MIR SINE MIR 12 179 -83 2378 76 0 0 chr6 41079819 41080121 -141335121 + AluY SINE Alu 1 302 -9 807 248 12 79 chr6 41080121 41080187 -141335055 + MIR SINE MIR 179 248 -14 241 252 130 30 chr6 41080274 41080405 -141334837 - L1MC/D LINE L1 -2089 5719 5576 1502 166 14 62 chr6 41080431 41080721 -141334521 - AluJb SINE Alu -17 295 20 937 206 25 10 chr6 41080772 41080971 -141334271 - AluJo SINE Alu -90 222 21 751 264 19 5 chr6 41081002 41081214 -141334028 + MER90 LTR ERV1 1 215 -399 884 109 0 0 chr6 41081214 41081333 -141333909 + AluSg/x SINE Alu 135 253 -57 1672 147 57 14 chr6 41081407 41081760 -141333482 + MER90 LTR ERV1 247 614 0 261 159 0 0 chr6 41081893 41081937 -141333305 - L1ME LINE L1 -461 5660 5617 2120 135 0 3 chr6 41081947 41082243 -141332999 - AluSx SINE Alu -17 295 1 2439 59 3 0 chr6 41082314 41082603 -141332639 + AluY SINE Alu 1 290 -21 2368 57 0 0 chr6 41082626 41082937 -141332305 - AluY SINE Alu 0 311 1 21 36 0 0 chr6 41083208 41083236 -141332006 + AT_rich Low_complexity Low_complexity 1 28 0 4713 147 22 55 chr6 41083372 41084178 -141331064 - L1MB2 LINE L1 -35 6136 5305 758 164 8 8 chr6 41084178 41084300 -141330942 - FLAM_C SINE Alu -11 122 1 4713 147 22 55 chr6 41084300 41084608 -141330634 - L1MB2 LINE L1 -866 5305 5070 2210 108 0 34 chr6 41084608 41084931 -141330311 - AluSq SINE Alu -1 312 1 4713 147 22 55 chr6 41084931 41085140 -141330102 - L1MB2 LINE L1 -1101 5070 4856 2284 106 7 0 chr6 41085574 41085875 -141329367 - AluSx SINE Alu -9 303 1 1856 133 0 4 chr6 41085972 41086242 -141329000 - AluJb SINE Alu -21 291 23 189 0 0 0 chr6 41086368 41086389 -141328853 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr6 41086743 41086766 -141328476 + AT_rich Low_complexity Low_complexity 1 23 0 761 226 7 7 chr6 41086844 41086990 -141328252 + FRAM SINE Alu 1 142 -34 363 154 0 0 chr6 41086990 41087055 -141328187 + GA-rich Low_complexity Low_complexity 1 65 0 2248 89 10 0 chr6 41087126 41087418 -141327824 + AluSg SINE Alu 1 295 -15 468 183 49 0 chr6 41087528 41087610 -141327632 + MIR SINE MIR 41 126 -136 1538 201 94 8 chr6 41087668 41088447 -141326795 + L1ME1 LINE L1 5113 6165 -1 2442 83 0 3 chr6 41088533 41088834 -141326408 + AluSc SINE Alu 1 300 -9 223 260 104 0 chr6 41089281 41089358 -141325884 - MIR SINE MIR 0 262 178 23 54 0 0 chr6 41089360 41089397 -141325845 + AT_rich Low_complexity Low_complexity 1 37 0 2354 112 3 0 chr6 41089466 41089778 -141325464 + AluSq SINE Alu 1 313 0 2109 126 3 3 chr6 41090121 41090430 -141324812 + AluSx SINE Alu 3 311 -1 189 0 0 0 chr6 41091178 41091199 -141324043 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1693 140 75 29 chr6 41091766 41091910 -141323332 + AluJb SINE Alu 1 137 -175 1672 156 0 11 chr6 41091910 41092185 -141323057 + AluSx SINE Alu 1 272 -40 1693 140 75 29 chr6 41092185 41092319 -141322923 + AluJb SINE Alu 137 292 -20 5281 174 81 43 chr6 41092366 41093766 -141321476 - Charlie1a DNA MER1_type -1 1454 2 2555 66 0 0 chr6 41094316 41094619 -141320623 - AluSg SINE Alu -6 304 2 1794 170 10 20 chr6 41095276 41095576 -141319666 - AluJo SINE Alu -15 297 1 554 240 111 12 chr6 41096007 41096178 -141319064 - MIR SINE MIR 0 262 75 218 296 10 71 chr6 41096824 41096922 -141318320 + MIR3 SINE MIR 97 165 -43 6812 124 58 15 chr6 41096973 41097833 -141317409 - Tigger3b DNA MER2_type -1797 1231 305 1825 179 7 13 chr6 41097833 41098141 -141317101 - AluJo SINE Alu -6 306 1 6812 124 58 15 chr6 41098141 41098460 -141316782 - Tigger3b DNA MER2_type -2723 305 1 22 0 0 0 chr6 41098551 41098573 -141316669 + AT_rich Low_complexity Low_complexity 1 22 0 1997 100 44 0 chr6 41098581 41098900 -141316342 + AluSx SINE Alu 1 331 0 388 270 104 52 chr6 41099036 41099175 -141316067 + MIR SINE MIR 31 186 -76 880 229 188 8 chr6 41099175 41099420 -141315822 + AluJo SINE Alu 2 290 -12 388 270 104 52 chr6 41099420 41099491 -141315751 + MIR SINE MIR 186 252 -10 205 281 173 14 chr6 41100109 41100248 -141314994 + MIR SINE MIR 21 181 -81 217 268 25 115 chr6 41100330 41100487 -141314755 + L2 LINE L2 2747 2889 -425 234 320 79 3 chr6 41100774 41100914 -141314328 + MIR SINE MIR 6 154 -71 642 259 37 59 chr6 41101829 41102150 -141313092 + L1MC4 LINE L1 7276 7589 -453 902 181 0 30 chr6 41102150 41102316 -141312926 + FRAM SINE Alu 10 170 -6 640 260 108 17 chr6 41102316 41102612 -141312630 + L1MC4 LINE L1 7577 7899 -143 2289 119 0 3 chr6 41102691 41103001 -141312241 + AluSx SINE Alu 1 309 -3 382 311 90 52 chr6 41104600 41104867 -141310375 - HAL1 LINE L1 -1041 1466 1190 808 197 6 39 chr6 41104875 41105053 -141310189 - MER5B DNA MER1_type -6 172 1 1679 150 16 53 chr6 41105118 41105438 -141309804 - AluJo SINE Alu -4 308 1 2039 152 0 0 chr6 41105525 41105828 -141309414 + AluSq SINE Alu 1 303 -10 2473 82 0 0 chr6 41105828 41106131 -141309111 + AluY SINE Alu 1 303 -8 1293 140 236 0 chr6 41106936 41107186 -141308056 + AluJo SINE Alu 2 310 -2 2200 107 0 16 chr6 41107323 41107633 -141307609 - AluSx SINE Alu -6 306 2 426 268 49 79 chr6 41107900 41108165 -141307077 + L1ME4a LINE L1 5855 6111 -10 263 303 20 0 chr6 41108321 41108420 -141306822 - L2 LINE L2 -1008 2306 2206 724 200 34 11 chr6 41108507 41108682 -141306560 + MER46B DNA MER2_type 2 55 -181 9156 35 2 1 chr6 41108798 41109868 -141305374 + MER11C LTR ERVK 1 1071 0 1356 161 67 42 chr6 41109937 41110222 -141305020 + AluJo SINE Alu 1 292 -20 25 51 0 0 chr6 41110778 41110817 -141304425 + AT_rich Low_complexity Low_complexity 1 39 0 581 106 16 81 chr6 41110817 41110940 -141304302 + MER46B DNA MER2_type 43 157 -79 508 105 0 35 chr6 41111140 41111226 -141304016 + MER46B DNA MER2_type 154 236 0 1311 118 0 5 chr6 41111474 41111661 -141303581 - AluSp SINE Alu -4 309 124 564 248 8 0 chr6 41111764 41111889 -141303353 + FLAM_A SINE Alu 1 126 -7 843 149 8 0 chr6 41111898 41112032 -141303210 + AluSq/x SINE Alu 1 135 -178 24 0 0 0 chr6 41112032 41112056 -141303186 + AT_rich Low_complexity Low_complexity 1 24 0 608 215 44 30 chr6 41112085 41112220 -141303022 - L2 LINE L2 0 3313 3177 216 269 90 26 chr6 41112403 41112481 -141302761 + L2 LINE L2 3172 3254 -18 366 269 143 8 chr6 41113125 41113244 -141301998 + MIR3 SINE MIR 61 195 -13 2157 177 58 56 chr6 41113424 41113466 -141301776 - MLT1D LTR MaLR -1 504 464 2315 91 3 22 chr6 41113466 41113784 -141301458 + AluSx SINE Alu 1 312 0 2461 68 0 13 chr6 41113788 41114099 -141301143 + AluY SINE Alu 1 307 -4 2157 177 58 56 chr6 41114099 41114553 -141300689 - MLT1D LTR MaLR -43 462 2 1054 92 0 0 chr6 41114807 41114938 -141300304 + AluSg SINE Alu 1 131 -179 2226 69 10 30 chr6 41114953 41115258 -141299984 + AluY SINE Alu 1 299 -12 4624 218 104 22 chr6 41115258 41115647 -141299595 - L1M4 LINE L1 -2017 4129 3774 1914 156 3 28 chr6 41115647 41115967 -141299275 + AluJb SINE Alu 1 312 0 4624 218 104 22 chr6 41115967 41116107 -141299135 - L1M4 LINE L1 -2372 3774 3647 2233 111 3 0 chr6 41116107 41116405 -141298837 - AluSp SINE Alu -14 299 1 4624 218 104 22 chr6 41116405 41117123 -141298119 - L1M4 LINE L1 -2499 3647 2726 2504 69 3 0 chr6 41117123 41117426 -141297816 - AluSp SINE Alu -9 304 1 4624 218 104 22 chr6 41117426 41117727 -141297515 - L1M4 LINE L1 -3420 2726 2451 1055 202 67 13 chr6 41117747 41117985 -141297257 + L1MB7 LINE L1 5877 6127 -57 815 152 0 15 chr6 41118015 41118147 -141297095 - FLAM_C SINE Alu -3 130 1 395 94 0 0 chr6 41118147 41118211 -141297031 + L1MB7 LINE L1 6112 6175 -9 2195 98 17 7 chr6 41118349 41118646 -141296596 + AluSq SINE Alu 1 300 -13 722 283 41 14 chr6 41118646 41118865 -141296377 + MIR SINE MIR 22 246 -16 722 193 0 22 chr6 41118921 41119056 -141296186 - FLAM_C SINE Alu 0 133 2 1953 153 3 33 chr6 41119135 41119442 -141295800 - AluJb SINE Alu -14 298 1 309 349 71 32 chr6 41120052 41120333 -141294909 - L2 LINE L2 -338 2976 2685 692 237 149 17 chr6 41120334 41120749 -141294493 + L2 LINE L2 2742 3213 -100 272 374 123 0 chr6 41120749 41120912 -141294330 - MIR SINE MIR -78 184 2 2394 71 3 10 chr6 41122152 41122447 -141292795 - AluSc SINE Alu -16 293 1 1971 132 65 3 chr6 41122610 41122950 -141292292 + MER47A DNA MER2_type 3 363 -3 377 270 112 45 chr6 41123061 41123351 -141291891 + L1ME LINE L1 5511 5822 -299 2228 82 27 3 chr6 41123467 41123761 -141291481 + AluSc SINE Alu 1 301 -8 426 20 0 0 chr6 41123866 41123917 -141291325 + (TG)n Simple_repeat Simple_repeat 2 52 0 505 268 54 0 chr6 41124078 41124190 -141291052 - L2 LINE L2 0 3272 3155 1618 92 0 0 chr6 41124457 41124653 -141290589 + AluSq SINE Alu 1 196 -117 1257 138 11 0 chr6 41124653 41124834 -141290408 + AluSg/x SINE Alu 113 295 -17 269 24 0 0 chr6 41125489 41125531 -141289711 - L1PA4 LINE L1 0 6155 6114 259 48 0 0 chr6 41125537 41125579 -141289663 - L1PA3 LINE L1 0 6155 6114 275 359 26 26 chr6 41125963 41126080 -141289162 + L3 LINE CR1 1338 1454 -123 22 0 0 0 chr6 41126947 41126969 -141288273 + AT_rich Low_complexity Low_complexity 1 22 0 2201 98 23 13 chr6 41127314 41127620 -141287622 + AluSq SINE Alu 5 313 0 1909 167 0 16 chr6 41127835 41128152 -141287090 + AluJb SINE Alu 1 312 0 2442 64 0 0 chr6 41128731 41129026 -141286216 - AluY SINE Alu -16 295 1 23 33 0 0 chr6 41129268 41129298 -141285944 + AT_rich Low_complexity Low_complexity 1 30 0 2302 78 3 20 chr6 41129502 41129808 -141285434 + AluY SINE Alu 1 301 -10 191 261 22 0 chr6 41129967 41130013 -141285229 - L2 LINE L2 -16 3256 3210 1834 158 44 0 chr6 41130126 41130423 -141284819 + AluJb SINE Alu 1 310 -2 22 56 0 0 chr6 41130449 41130485 -141284757 + AT_rich Low_complexity Low_complexity 1 36 0 449 230 53 18 chr6 41130771 41130884 -141284358 + MIR3 SINE MIR 63 179 -29 554 194 366 11 chr6 41131459 41131634 -141283608 - MIR SINE MIR 0 262 26 639 260 59 55 chr6 41181807 41182175 -141233067 - MLT1H1 LTR MaLR -204 363 1 448 301 85 45 chr6 41182175 41182421 -141232821 - MLT1H1-int LTR MaLR 0 1371 1116 2208 123 3 0 chr6 41182463 41182756 -141232486 + AluSx SINE Alu 1 294 -18 1328 125 11 0 chr6 41182851 41183035 -141232207 - AluSg/x SINE Alu -2 310 125 446 244 40 0 chr6 41183043 41183169 -141232073 - MLT1H LTR MaLR -342 207 31 793 138 6 24 chr6 41183347 41183374 -141231868 + MER53 DNA DNA 1 27 -162 2286 85 0 14 chr6 41183374 41183698 -141231544 + AluSx SINE Alu 1 312 0 793 138 6 24 chr6 41183698 41183837 -141231405 + MER53 DNA DNA 27 164 -25 231 145 116 87 chr6 41183833 41183902 -141231340 - MER53 DNA DNA -94 95 25 * 2701 7 0 0 chr6 41183902 41184241 -141231001 - AluYa5 SINE Alu 0 339 1 2037 138 3 3 chr6 41184243 41184539 -141230703 - AluJb SINE Alu -16 296 1 2229 125 0 0 chr6 41184551 41184846 -141230396 - AluSx SINE Alu -17 295 1 588 136 9 0 chr6 41184966 41185076 -141230166 + L1PA14 LINE L1 6051 6161 0 653 214 94 44 chr6 41185087 41185155 -141230087 + L1MC4a LINE L1 4889 4952 -1194 2538 64 0 0 chr6 41185155 41185450 -141229792 - AluY SINE Alu -16 295 1 653 214 94 44 chr6 41185450 41185656 -141229586 + L1MC4a LINE L1 4952 5177 -969 2378 105 0 0 chr6 41185666 41185961 -141229281 + AluSq SINE Alu 1 295 -18 921 156 21 0 chr6 41185961 41186102 -141229140 + AluSg/x SINE Alu 134 277 -35 820 113 56 0 chr6 41186102 41186262 -141228980 + L1MA4A LINE L1 6124 6292 -11 965 259 106 61 chr6 41186332 41186823 -141228419 + LTR67 LTR ERVL 45 557 0 229 317 20 30 chr6 41186823 41186924 -141228318 + MIR SINE MIR 48 147 -61 385 229 55 9 chr6 41187386 41187495 -141227747 + L1ME4a LINE L1 4587 4700 -1446 2456 57 0 0 chr6 41187558 41187865 -141227377 + AluY SINE Alu 1 307 0 501 47 0 0 chr6 41187894 41187958 -141227284 + (TA)n Simple_repeat Simple_repeat 2 65 0 2516 92 0 0 chr6 41187958 41188263 -141226979 - AluSg SINE Alu -5 305 1 265 284 28 68 chr6 41188344 41188520 -141226722 + L1P LINE L1 4880 5048 -1098 2076 134 3 0 chr6 41188526 41188818 -141226424 + AluSx SINE Alu 1 293 -19 2494 100 0 0 chr6 41188840 41189151 -141226091 + AluSq SINE Alu 1 311 -2 810 286 54 53 chr6 41189165 41189892 -141225350 + L1ME4a LINE L1 5374 6114 -7 2507 56 10 23 chr6 41189914 41190219 -141225023 - AluSp SINE Alu -12 301 1 2127 108 15 20 chr6 41190241 41190582 -141224660 - L1PA13 LINE L1 -1 6162 5824 536 299 141 46 chr6 41190592 41190960 -141224282 + L1PA13 LINE L1 5395 5797 -2011 2151 124 10 0 chr6 41190960 41191250 -141223992 - AluSx SINE Alu -19 293 1 995 212 81 28 chr6 41191309 41191455 -141223787 + MLT1J LTR MaLR 1 138 -373 207 0 0 0 chr6 41191455 41191478 -141223764 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 995 212 81 28 chr6 41191478 41191727 -141223515 + MLT1J LTR MaLR 138 509 -2 1878 127 7 20 chr6 41191732 41192024 -141223218 - THE1B LTR MaLR 0 364 77 350 232 21 0 chr6 41192036 41192131 -141223111 + L1MC4a LINE L1 5835 5931 -1877 193 278 148 26 chr6 41192521 41192636 -141222606 - L2 LINE L2 -5 3308 3180 267 224 30 0 chr6 41192668 41192735 -141222507 - L2 LINE L2 -246 3067 2999 2044 210 48 17 chr6 41192852 41192895 -141222347 + L1ME1 LINE L1 5435 5475 -689 1810 141 44 24 chr6 41192895 41193193 -141222049 + AluJb SINE Alu 1 304 -8 2044 210 48 17 chr6 41193193 41193690 -141221552 + L1ME1 LINE L1 5475 5972 -192 1917 157 24 0 chr6 41193742 41194035 -141221207 + AluJb SINE Alu 7 306 -6 2148 121 3 0 chr6 41194035 41194324 -141220918 + AluSx SINE Alu 1 290 -22 473 229 74 13 chr6 41194337 41194518 -141220724 + L1ME1 LINE L1 5988 6331 -3 1637 137 67 60 chr6 41194575 41194875 -141220367 - AluJo SINE Alu -10 302 1 1288 130 0 0 chr6 41195628 41195805 -141219437 + AluJb SINE Alu 136 312 0 451 297 113 11 chr6 41196068 41196253 -141218989 - MIR SINE MIR 0 262 59 206 279 105 0 chr6 41196574 41196660 -141218582 + L2 LINE L2 2965 3059 -213 2487 93 0 0 chr6 41196868 41197180 -141218062 + AluSq SINE Alu 1 312 -1 2399 92 10 0 chr6 41197234 41197529 -141217713 + AluSq SINE Alu 2 299 -14 30 0 0 0 chr6 41197610 41197640 -141217602 + AT_rich Low_complexity Low_complexity 1 30 0 1810 117 32 0 chr6 41197649 41197897 -141217345 - AluSx SINE Alu -55 257 2 616 247 28 39 chr6 41197937 41198119 -141217123 + MIR SINE MIR 25 204 -58 280 340 86 36 chr6 41198226 41198792 -141216450 - L2 LINE L2 -265 3007 2401 1535 208 21 3 chr6 41198792 41199081 -141216161 + AluJo SINE Alu 5 298 -14 280 340 86 36 chr6 41199081 41199106 -141216136 - L2 LINE L2 -871 2401 2379 368 353 0 7 chr6 41200024 41200177 -141215065 + (TG)n Simple_repeat Simple_repeat 2 153 0 299 263 29 58 chr6 41200828 41200965 -141214277 - L2 LINE L2 -238 3034 2902 219 279 229 25 chr6 41200973 41201095 -141214147 - MIR3 SINE MIR -41 167 21 339 286 76 0 chr6 41201181 41201286 -141213956 + MIR SINE MIR 37 149 -59 265 261 57 11 chr6 41201342 41201430 -141213812 + L2 LINE L2 3180 3271 -1 1021 181 31 48 chr6 41201959 41202186 -141213056 + L1ME2 LINE L1 5931 6153 -11 530 332 14 14 chr6 41203496 41203710 -141211532 - MIR SINE MIR 0 262 49 2285 92 20 3 chr6 41203768 41204060 -141211182 + AluSx SINE Alu 1 297 -15 2334 90 7 0 chr6 41204162 41204452 -141210790 - AluSp SINE Alu -21 292 1 252 219 14 55 chr6 41204491 41204564 -141210678 + MIR SINE MIR 84 153 -109 910 274 61 51 chr6 41204604 41205013 -141210229 + L2 LINE L2 2886 3298 -15 180 0 0 0 chr6 41205013 41205033 -141210209 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 340 287 86 29 chr6 41205210 41205490 -141209752 + L2 LINE L2 2765 3062 -210 220 220 0 102 chr6 41205581 41205640 -141209602 + L2 LINE L2 3242 3294 -19 2483 87 0 0 chr6 41205650 41205961 -141209281 + AluY SINE Alu 1 311 0 25 0 0 0 chr6 41205961 41205986 -141209256 + AT_rich Low_complexity Low_complexity 1 25 0 201 304 0 43 chr6 41206012 41206081 -141209161 + L2 LINE L2 3205 3270 -2 272 299 84 40 chr6 41206630 41206809 -141208433 + MIR SINE MIR 71 255 -7 1009 156 0 73 chr6 41207292 41207471 -141207771 + AluJb SINE Alu 134 299 -13 412 318 0 8 chr6 41207501 41207627 -141207615 + MIR SINE MIR 83 207 -55 216 206 0 68 chr6 41208857 41208930 -141206312 - MIR SINE MIR -86 122 55 396 0 0 0 chr6 41209235 41209279 -141205963 + (CA)n Simple_repeat Simple_repeat 1 44 0 192 77 0 0 chr6 41210823 41210849 -141204393 + (CGGG)n Simple_repeat Simple_repeat 1 26 0 188 336 154 0 chr6 41212030 41212179 -141203063 - L3 LINE CR1 -8 1569 1398 2375 101 3 0 chr6 41213126 41213433 -141201809 - AluSx SINE Alu -4 308 1 198 245 57 0 chr6 41213485 41213538 -141201704 + L2 LINE L2 3141 3196 -76 440 295 93 22 chr6 41213578 41213761 -141201481 + MIR SINE MIR 30 225 -37 275 228 18 0 chr6 41213836 41213893 -141201349 + MER94 DNA DNA 19 76 -58 221 203 102 17 chr6 41213963 41214022 -141201220 + L2 LINE L2 3207 3270 -2 183 80 0 0 chr6 41214382 41214407 -141200835 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 236 286 16 0 chr6 41214649 41214712 -141200530 + G-rich Low_complexity Low_complexity 5 68 0 2088 139 7 0 chr6 41215588 41215898 -141199344 + AluSx SINE Alu 1 312 0 580 229 169 11 chr6 41216049 41216212 -141199030 - MIR SINE MIR -1 261 65 2064 95 32 3 chr6 41216212 41216496 -141198746 - AluSg SINE Alu -18 292 1 580 229 169 11 chr6 41216496 41216515 -141198727 - MIR SINE MIR -197 65 50 1737 159 17 20 chr6 41216862 41217157 -141198085 - AluJb SINE Alu -18 294 1 2158 132 6 3 chr6 41217216 41217527 -141197715 + AluJb SINE Alu 1 312 0 243 261 0 0 chr6 41217668 41217737 -141197505 + L3b LINE CR1 1310 1378 -205 2089 138 10 7 chr6 41219308 41219605 -141195637 - AluSx SINE Alu -14 298 1 409 258 11 0 chr6 41220337 41220430 -141194812 - MER91B DNA MER1_type 0 190 97 362 256 16 78 chr6 41220463 41220592 -141194650 - MER91B DNA MER1_type -69 121 1 1308 205 118 23 chr6 41221493 41221829 -141193413 - MER21B LTR ERV1 -109 754 386 4785 60 22 0 chr6 41221829 41222450 -141192792 - PABL_A LTR ERV1 0 660 26 917 216 138 112 chr6 41222481 41222829 -141192413 - MER21B LTR ERV1 -498 365 9 1092 145 9 1 chr6 41223593 41223822 -141191420 - AluJb SINE Alu -10 302 43 299 296 168 14 chr6 41223869 41224089 -141191153 - L1ME LINE L1 -412 5758 5505 2228 110 0 17 chr6 41224108 41224409 -141190833 - AluSx SINE Alu -10 302 7 282 137 0 0 chr6 41224462 41224513 -141190729 + L1MA4 LINE L1 6248 6298 -2 1692 161 4 0 chr6 41224603 41224852 -141190390 - AluJb SINE Alu -62 250 1 278 259 238 14 chr6 41224857 41224912 -141190330 - MER5A DNA MER1_type -2 187 146 2428 76 13 3 chr6 41224912 41225215 -141190027 + AluSx SINE Alu 1 306 -6 278 259 238 14 chr6 41225215 41225302 -141189940 - MER5A DNA MER1_type -43 146 13 244 268 28 0 chr6 41225448 41225519 -141189723 + L2 LINE L2 2288 2360 -954 2388 86 0 3 chr6 41225911 41226212 -141189030 - AluSp SINE Alu -13 300 1 721 271 41 29 chr6 41226242 41226486 -141188756 - L2 LINE L2 -1 3312 3066 1037 139 0 6 chr6 41226512 41226670 -141188572 + AluSg/x SINE Alu 156 312 0 977 188 35 41 chr6 41226674 41226828 -141188414 + L1MD2 LINE L1 5063 5216 -1143 2369 98 0 3 chr6 41226828 41227134 -141188108 - AluSc SINE Alu -4 305 1 977 188 35 41 chr6 41227134 41227211 -141188031 + L1MD2 LINE L1 5216 5292 -1067 1765 120 4 4 chr6 41227211 41227461 -141187781 + AluSg SINE Alu 44 293 -17 977 188 35 41 chr6 41227461 41228320 -141186922 + L1MD2 LINE L1 5292 6344 -15 715 190 44 0 chr6 41228320 41228457 -141186785 + L1MD2 LINE L1 6194 6347 -12 2175 122 7 0 chr6 41228457 41228760 -141186482 + AluSx SINE Alu 1 305 -7 715 190 44 0 chr6 41228760 41228773 -141186469 + L1MD2 LINE L1 6347 6358 -1 977 188 35 41 chr6 41228773 41228788 -141186454 + L1MD2 LINE L1 6344 6358 -1 2319 236 170 21 chr6 41228794 41229913 -141185329 - L2 LINE L2 -162 3151 1859 698 338 48 28 chr6 41230584 41231120 -141184122 + L1M4 LINE L1 2312 2858 -3288 1644 101 5 0 chr6 41231768 41231987 -141183255 - AluSg/x SINE Alu -8 304 85 578 202 174 131 chr6 41232097 41232169 -141183073 - MLT1I LTR MaLR -3 406 339 2637 44 0 0 chr6 41232169 41232463 -141182779 + AluY SINE Alu 1 294 -17 578 202 174 131 chr6 41232463 41232672 -141182570 - MLT1I LTR MaLR -70 339 113 645 241 30 59 chr6 41232755 41232958 -141182284 + MIR SINE MIR 9 205 -57 2251 94 3 7 chr6 41233024 41233323 -141181919 + AluSp SINE Alu 1 298 -15 2396 80 0 7 chr6 41233605 41233905 -141181337 - AluSc SINE Alu -11 298 1 369 264 27 18 chr6 41234096 41234206 -141181036 - MIR3 SINE MIR -46 162 52 2023 146 3 13 chr6 41234767 41235082 -141180160 - AluJb SINE Alu 0 312 1 2322 75 13 16 chr6 41235524 41235829 -141179413 - AluSp SINE Alu -9 304 1 1186 151 0 6 chr6 41236077 41236256 -141178986 - AluSg/x SINE Alu -1 309 132 2259 116 0 0 chr6 41236256 41236548 -141178694 - AluSx SINE Alu -20 292 1 2187 91 26 19 chr6 41236592 41236901 -141178341 + AluY SINE Alu 1 311 0 1326 235 123 43 chr6 41237054 41237543 -141177699 - LTR41 LTR ERVL -9 764 237 416 180 223 14 chr6 41237626 41237765 -141177477 - LTR41 LTR ERVL -476 297 130 2114 216 90 10 chr6 41237769 41238256 -141176986 - MLT1F1 LTR MaLR -41 526 1 189 271 83 0 chr6 41238265 41238313 -141176929 - L2 LINE L2 -10 3303 3252 578 112 11 0 chr6 41238841 41238930 -141176312 + AluJo/FLAM SINE Alu 22 111 -201 2127 87 0 31 chr6 41238932 41239243 -141175999 - AluSq SINE Alu 0 308 7 2424 72 20 3 chr6 41239253 41239559 -141175683 - AluY SINE Alu 0 311 1 1005 287 78 53 chr6 41239648 41239787 -141175455 + MLT1E LTR MaLR 1 135 -458 2342 97 0 7 chr6 41239787 41240086 -141175156 - AluSx SINE Alu -13 299 3 1005 287 78 53 chr6 41240086 41240475 -141174767 + MLT1E LTR MaLR 135 547 -46 1828 141 166 3 chr6 41240475 41240843 -141174399 + MSTA LTR MaLR 1 428 0 1005 287 78 53 chr6 41240843 41240892 -141174350 + MLT1E LTR MaLR 547 593 0 1641 154 7 67 chr6 41241289 41241587 -141173655 + AluJb SINE Alu 1 280 -32 261 0 0 0 chr6 41241587 41241616 -141173626 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2243 107 23 13 chr6 41241630 41241938 -141173304 + AluSx SINE Alu 1 311 -1 1775 143 57 46 chr6 41242588 41242632 -141172610 - THE1C LTR MaLR 0 375 333 270 0 0 0 chr6 41242632 41242662 -141172580 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1978 101 41 4 chr6 41242662 41242929 -141172313 - AluSc SINE Alu -32 277 1 1775 143 57 46 chr6 41242929 41243254 -141171988 - THE1C LTR MaLR -41 334 1 3526 151 39 32 chr6 41243254 41243534 -141171708 + L1 LINE L1 4561 4838 -1308 1894 156 14 0 chr6 41243534 41243822 -141171420 - AluJo SINE Alu -20 292 1 3526 151 39 32 chr6 41243822 41243964 -141171278 + L1 LINE L1 4838 4978 -1168 2441 96 3 0 chr6 41243964 41244266 -141170976 + AluSp SINE Alu 1 303 -10 3526 151 39 32 chr6 41244266 41244438 -141170804 + L1 LINE L1 4978 5165 -981 2255 110 0 0 chr6 41244438 41244744 -141170498 + AluSg SINE Alu 1 306 0 3526 151 39 32 chr6 41244744 41244887 -141170355 + L1 LINE L1 5165 5306 -840 2167 129 0 10 chr6 41244958 41245253 -141169989 + AluSx SINE Alu 1 292 -20 2520 90 0 3 chr6 41245258 41245570 -141169672 + AluY SINE Alu 1 311 0 661 278 192 26 chr6 41245570 41245919 -141169323 - L1MC/D LINE L1 -2007 5801 5395 198 91 0 0 chr6 41245970 41246003 -141169239 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1271 119 119 4 chr6 41246005 41246241 -141169001 + L1M2 LINE L1 5325 5587 -710 1827 127 3 24 chr6 41246242 41246595 -141168647 - MER4A LTR ERV1 0 664 261 588 122 10 10 chr6 41246595 41246693 -141168549 - MER4A LTR ERV1 -566 98 1 1269 136 10 0 chr6 41246693 41246892 -141168350 + L1M2 LINE L1 5585 5785 -512 536 202 0 0 chr6 41246894 41246988 -141168254 + AluJ/FLAM SINE Alu 2 95 -217 2924 159 66 50 chr6 41247014 41247529 -141167713 - LTR9B LTR ERV1 0 644 139 1750 81 84 37 chr6 41247529 41247802 -141167440 + AluSg SINE Alu 2 287 -23 2924 159 66 50 chr6 41247802 41247851 -141167391 - LTR9B LTR ERV1 -505 139 92 1893 53 9 4 chr6 41247851 41248078 -141167164 + AluY SINE Alu 83 310 -1 2924 159 66 50 chr6 41248078 41248134 -141167108 - LTR9B LTR ERV1 -552 92 13 2168 102 0 0 chr6 41248134 41248418 -141166824 + AluSx SINE Alu 19 302 -10 242 133 133 0 chr6 41248418 41248463 -141166779 + AluJ SINE Alu 77 127 -175 183 42 0 0 chr6 41248464 41248488 -141166754 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2428 92 0 3 chr6 41249004 41249349 -141165893 + AluSq SINE Alu 1 344 0 26 0 0 0 chr6 41250629 41250655 -141164587 + AT_rich Low_complexity Low_complexity 1 26 0 1171 123 41 0 chr6 41250747 41250918 -141164324 + AluJ SINE Alu 121 298 -14 1792 150 23 49 chr6 41251250 41251557 -141163685 - AluJo SINE Alu -10 302 4 1684 152 8 16 chr6 41251575 41251831 -141163411 - AluJo SINE Alu -57 255 2 232 260 0 27 chr6 41252062 41252135 -141163107 + LTR33A LTR ERVL 445 515 -8 213 265 20 0 chr6 41252139 41252188 -141163054 + L2 LINE L2 3223 3272 0 497 186 28 76 chr6 41252295 41252337 -141162905 - MER112 DNA MER1_type -35 225 183 2600 73 0 0 chr6 41252337 41252639 -141162603 - AluSg SINE Alu -8 302 1 497 186 28 76 chr6 41252639 41252741 -141162501 - MER112 DNA MER1_type -77 183 88 2585 57 0 0 chr6 41253057 41253357 -141161885 - AluY SINE Alu -11 300 1 214 276 98 16 chr6 41254665 41254788 -141160454 + L2 LINE L2 2887 3019 -253 2192 80 21 17 chr6 41255128 41255415 -141159827 + AluSx SINE Alu 10 297 -15 243 0 0 0 chr6 41255416 41255443 -141159799 + (TA)n Simple_repeat Simple_repeat 2 28 0 41 0 0 0 chr6 41255503 41255544 -141159698 + AT_rich Low_complexity Low_complexity 1 41 0 1178 176 48 4 chr6 41255563 41255790 -141159452 - AluJb SINE Alu -4 308 72 21 36 0 0 chr6 41255852 41255880 -141159362 + AT_rich Low_complexity Low_complexity 1 28 0 1216 136 0 16 chr6 41255886 41256070 -141159172 + AluSg/x SINE Alu 85 265 -47 30 27 0 0 chr6 41256080 41256117 -141159125 + AT_rich Low_complexity Low_complexity 1 37 0 478 224 60 0 chr6 41256519 41256653 -141158589 + MIR3 SINE MIR 30 171 -37 469 228 62 14 chr6 41257076 41257221 -141158021 + MIR SINE MIR 2 153 -109 246 184 13 105 chr6 41257270 41257346 -141157896 + MLT1J2 LTR MaLR 71 139 -311 1266 138 147 18 chr6 41257381 41257599 -141157643 - AluJo SINE Alu -13 299 54 239 179 0 0 chr6 41257600 41257639 -141157603 + Alu SINE Alu 2 40 -262 713 90 0 0 chr6 41257639 41257739 -141157503 + AluSg/x SINE Alu 213 312 0 377 179 0 0 chr6 41257759 41257826 -141157416 - AluJo SINE Alu -235 67 1 881 142 0 0 chr6 41258112 41258239 -141157003 + FLAM_C SINE Alu 1 127 -16 24 32 0 0 chr6 41258249 41258280 -141156962 + AT_rich Low_complexity Low_complexity 1 31 0 302 221 0 84 chr6 41258491 41258586 -141156656 - MIR3 SINE MIR -13 195 109 1898 137 23 3 chr6 41258737 41259036 -141156206 + AluSx SINE Alu 1 305 -7 546 266 103 56 chr6 41260350 41260642 -141154600 + L2 LINE L2 2939 3249 -23 2206 134 0 0 chr6 41260642 41260949 -141154293 - AluSx SINE Alu -5 307 1 546 266 103 56 chr6 41260949 41260975 -141154267 + L2 LINE L2 3249 3272 0 556 292 51 17 chr6 41261073 41261251 -141153991 + MIR SINE MIR 3 186 -76 1983 106 78 0 chr6 41261483 41261765 -141153477 - AluSq SINE Alu -9 304 1 740 226 58 11 chr6 41261778 41261968 -141153274 - MIR SINE MIR -44 218 20 304 241 0 4 chr6 41262701 41262771 -141152471 - MIR SINE MIR -64 144 84 323 286 21 29 chr6 41262779 41262919 -141152323 - MLT1K LTR MaLR -1 587 449 472 196 135 177 chr6 41262967 41263057 -141152185 - MIR SINE MIR 0 262 170 1654 141 0 74 chr6 41263057 41263340 -141151902 - AluJb SINE Alu -50 262 1 472 196 135 177 chr6 41263340 41263509 -141151733 - MIR SINE MIR -92 170 14 384 285 146 0 chr6 41263544 41263674 -141151568 - MLT1K LTR MaLR -290 298 150 231 298 87 0 chr6 41264078 41264182 -141151060 - L2 LINE L2 -38 3234 3122 * 1078 248 51 88 chr6 41264168 41264427 -141150815 - L2 LINE L2 0 3313 3081 2337 116 0 19 chr6 41264427 41264745 -141150497 - AluSx SINE Alu 0 312 1 1078 248 51 88 chr6 41264745 41264994 -141150248 - L2 LINE L2 -232 3081 2824 442 253 205 39 chr6 41265016 41265348 -141149894 - L2 LINE L2 -2 3311 2925 208 297 18 45 chr6 41265377 41265488 -141149754 - L2 LINE L2 -570 2744 2637 725 208 78 74 chr6 41265692 41265922 -141149320 - L1ME3 LINE L1 -35 6127 5899 2168 127 3 0 chr6 41265922 41266214 -141149028 + AluSx SINE Alu 1 293 -19 2486 73 7 7 chr6 41266218 41266521 -141148721 + AluY SINE Alu 1 303 -8 725 208 78 74 chr6 41266521 41266554 -141148688 - L1ME3 LINE L1 -265 5897 5858 317 169 0 60 chr6 41266611 41266633 -141148609 - MER3 DNA MER1_type -6 203 181 2853 123 58 71 chr6 41266633 41267251 -141147991 - MER4B LTR ERV1 0 610 1 317 169 0 60 chr6 41267251 41267311 -141147931 - MER3 DNA MER1_type -28 181 126 725 161 0 8 chr6 41267311 41267429 -141147813 + AluJo SINE Alu 1 117 -195 2725 198 38 58 chr6 41267429 41267868 -141147374 - MER50 LTR ERV1 -3 731 312 2708 50 0 0 chr6 41267868 41268170 -141147072 - AluY SINE Alu -9 302 1 2725 198 38 58 chr6 41268170 41268467 -141146775 - MER50 LTR ERV1 -422 312 10 1357 136 15 0 chr6 41268471 41268669 -141146573 + AluJo SINE Alu 111 311 -1 2174 100 45 3 chr6 41268676 41268967 -141146275 + AluSx SINE Alu 1 303 -9 630 127 119 0 chr6 41268970 41269088 -141146154 - MER3 DNA MER1_type -77 132 1 569 203 0 8 chr6 41269090 41269208 -141146034 + L2 LINE L2 3191 3307 -6 674 289 78 0 chr6 41271169 41271349 -141143893 - MIR SINE MIR -11 251 58 219 69 0 0 chr6 41271377 41271406 -141143836 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 1753 182 23 0 chr6 41271955 41272302 -141142940 + L1 LINE L1 4810 5164 -982 2145 126 0 3 chr6 41272305 41272599 -141142643 + AluSx SINE Alu 1 293 -19 1873 153 10 30 chr6 41272626 41272927 -141142315 - AluJb SINE Alu -17 295 1 287 167 51 51 chr6 41273104 41273182 -141142060 - MER34 LTR ERV1 -2 540 463 262 263 92 26 chr6 41273382 41273534 -141141708 - LTR48B LTR ERV1 -354 290 129 1407 129 13 30 chr6 41273537 41273769 -141141473 + AluJb SINE Alu 85 312 0 1589 81 196 93 chr6 41273935 41274023 -141141219 - MER47A DNA MER2_type -1957 366 288 2517 78 3 0 chr6 41274023 41274332 -141140910 + AluSg SINE Alu 1 310 0 1589 81 196 93 chr6 41274332 41274343 -141140899 - MER47A DNA MER2_type -2035 288 280 1844 155 3 67 chr6 41274343 41274482 -141140760 + AluJb SINE Alu 1 147 -165 1858 142 18 0 chr6 41274482 41274608 -141140634 + AluSx SINE Alu 3 125 -187 216 0 0 0 chr6 41274608 41274632 -141140610 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1858 142 18 0 chr6 41274632 41274779 -141140463 + AluSx SINE Alu 125 281 -31 1844 155 3 67 chr6 41274779 41274793 -141140449 + AluJb SINE Alu 147 160 -152 252 0 0 0 chr6 41274793 41274821 -141140421 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1844 155 3 67 chr6 41274821 41274982 -141140260 + AluJb SINE Alu 160 296 -16 1589 81 196 93 chr6 41274982 41275213 -141140029 - MER47A DNA MER2_type -2043 280 1 369 260 36 99 chr6 41275605 41275797 -141139445 + MLT1J LTR MaLR 1 180 -331 2324 104 0 3 chr6 41275838 41276137 -141139105 + AluSq SINE Alu 3 300 -13 283 241 12 24 chr6 41276336 41276419 -141138823 + MLT1J LTR MaLR 428 509 -2 507 383 48 12 chr6 41276449 41276697 -141138545 - L3 LINE CR1 -1 1576 1320 2301 90 3 10 chr6 41276729 41277030 -141138212 + AluSx SINE Alu 1 299 -13 331 279 106 0 chr6 41277075 41277179 -141138063 + MIR SINE MIR 71 185 -77 330 26 0 0 chr6 41277355 41277394 -141137848 + (TG)n Simple_repeat Simple_repeat 1 39 0 187 262 65 56 chr6 41278124 41278231 -141137011 + MIR SINE MIR 58 165 -97 490 213 33 33 chr6 41278732 41278854 -141136388 + MIR SINE MIR 18 139 -69 363 270 127 24 chr6 41279119 41279245 -141135997 + MIR SINE MIR 60 198 -64 2307 113 3 0 chr6 41279348 41279650 -141135592 + AluSg SINE Alu 1 303 -7 360 0 0 0 chr6 41280177 41280217 -141135025 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 64 0 0 chr6 41280382 41280429 -141134813 + AT_rich Low_complexity Low_complexity 1 47 0 207 0 0 0 chr6 41281200 41281223 -141134019 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 656 167 5 4 chr6 41281223 41281418 -141133824 - AluJb SINE Alu -27 285 2 431 282 105 48 chr6 41281422 41281631 -141133611 + MIR SINE MIR 23 243 -19 701 85 0 0 chr6 41282139 41282233 -141133009 - MER4E LTR ERV1 0 766 673 5013 86 33 9 chr6 41282233 41282378 -141132864 - LTR8 LTR ERV1 0 691 551 2248 106 3 0 chr6 41282378 41282661 -141132581 - AluSq SINE Alu -28 285 2 5013 86 33 9 chr6 41282661 41283190 -141132052 - LTR8 LTR ERV1 -140 551 1 831 238 57 52 chr6 41283190 41283455 -141131787 + MER4B-int LTR ERV1 756 1025 -5733 2157 97 0 4 chr6 41283455 41283733 -141131509 - AluSg SINE Alu -32 278 2 831 238 57 52 chr6 41283733 41283854 -141131388 + MER4B-int LTR ERV1 1025 1144 -5614 198 0 0 0 chr6 41283854 41283876 -141131366 + (TG)n Simple_repeat Simple_repeat 2 23 0 2217 117 91 34 chr6 41283892 41284094 -141131148 + MER4B-int LTR ERV1 1764 1953 -4645 1674 143 0 0 chr6 41284094 41284331 -141130911 + AluSx SINE Alu 64 300 -12 2217 117 91 34 chr6 41284331 41284599 -141130643 + MER4B-int LTR ERV1 1953 2261 -4337 2002 106 4 0 chr6 41284824 41285120 -141130122 + AluSq SINE Alu 27 323 0 2164 94 37 14 chr6 41285127 41285424 -141129818 + AluSg SINE Alu 1 304 -6 2360 110 0 0 chr6 41285430 41285731 -141129511 + AluSx SINE Alu 1 301 -11 2339 97 10 0 chr6 41285819 41286129 -141129113 + AluSp SINE Alu 1 313 0 1165 119 0 0 chr6 41286130 41286324 -141128918 + AluSp SINE Alu 135 328 0 1551 132 4 44 chr6 41286444 41286695 -141128547 - AluJo SINE Alu -51 261 21 1205 114 0 6 chr6 41286729 41286895 -141128347 - AluSq SINE Alu -12 301 137 339 258 136 38 chr6 41286895 41287027 -141128215 - MIR SINE MIR -100 162 18 2415 81 3 3 chr6 41287063 41287370 -141127872 - AluY SINE Alu -2 309 3 31 26 0 0 chr6 41287431 41287469 -141127773 + AT_rich Low_complexity Low_complexity 1 38 0 205 132 19 19 chr6 41287628 41287681 -141127561 + (TA)n Simple_repeat Simple_repeat 1 53 0 197 308 77 48 chr6 41287688 41287792 -141127450 + L2 LINE L2 3204 3310 -3 408 163 0 184 chr6 41289070 41289217 -141126025 - MIR3 SINE MIR -7 201 82 1861 174 0 13 chr6 41289642 41289958 -141125284 - AluJb SINE Alu 0 312 1 696 159 71 16 chr6 41289982 41290131 -141125111 + FLAM_C SINE Alu 1 133 0 314 229 67 0 chr6 41290467 41290572 -141124670 - MIR3 SINE MIR -7 201 90 245 246 134 82 chr6 41290705 41290876 -141124366 - MIR SINE MIR -55 207 28 722 154 0 65 chr6 41291002 41291125 -141124117 + FLAM_C SINE Alu 4 118 -25 203 164 49 0 chr6 41291128 41291189 -141124053 + (TA)n Simple_repeat Simple_repeat 1 64 0 * 221 118 0 39 chr6 41291145 41291196 -141124046 + (TAAAAA)n Simple_repeat Simple_repeat 3 51 0 1045 127 0 0 chr6 41291196 41291338 -141123904 + AluJo SINE Alu 1 142 -170 435 73 24 12 chr6 41291355 41291437 -141123805 + (TA)n Simple_repeat Simple_repeat 1 83 0 822 174 28 55 chr6 41292080 41292313 -141122929 - MLT1A1 LTR MaLR -3 393 142 1959 119 0 0 chr6 41292374 41292634 -141122608 - AluJb SINE Alu -52 260 1 514 28 28 0 chr6 41292640 41292711 -141122531 - L1MA5 LINE L1 -2 6298 6226 1161 171 0 9 chr6 41292760 41292977 -141122265 - L1MA5 LINE L1 -79 6221 6007 915 126 7 13 chr6 41292981 41293132 -141122110 - MLT1A1 LTR MaLR -204 161 12 348 284 147 0 chr6 41293139 41293248 -141121994 + MIR SINE MIR 127 251 -11 973 104 7 14 chr6 41293265 41293409 -141121833 + AluYb8 SINE Alu 1 143 -175 1597 52 11 0 chr6 41293496 41293687 -141121555 + AluY SINE Alu 119 311 0 1071 233 62 34 chr6 41293703 41294055 -141121187 - MLT1I LTR MaLR 0 409 48 444 319 100 6 chr6 41294130 41294290 -141120952 - MIR SINE MIR -3 259 85 408 283 0 72 chr6 41294759 41294925 -141120317 + MIR SINE MIR 16 169 -93 863 228 16 75 chr6 41295440 41295603 -141119639 - MIR SINE MIR -4 258 114 2350 103 0 0 chr6 41295603 41295903 -141119339 + AluSx SINE Alu 1 300 -12 863 228 16 75 chr6 41295903 41295993 -141119249 - MIR SINE MIR -148 114 20 203 220 0 60 chr6 41296002 41296052 -141119190 - MER5A DNA MER1_type -28 161 115 2479 69 7 0 chr6 41296070 41296373 -141118869 - AluY SINE Alu -6 305 1 317 251 17 95 chr6 41296513 41296617 -141118625 - MER104 DNA Tc2 -1726 172 86 2383 91 3 3 chr6 41296617 41296925 -141118317 - AluSp SINE Alu -3 310 3 317 251 17 95 chr6 41296925 41296999 -141118243 - MER104 DNA Tc2 -1812 86 8 258 224 35 112 chr6 41297075 41297218 -141118024 + MIR3 SINE MIR 6 137 -71 191 306 56 0 chr6 41297708 41297780 -141117462 - L2 LINE L2 -53 3219 3144 196 223 136 109 chr6 41298193 41298377 -141116865 + L2 LINE L2 3028 3216 -56 236 272 88 18 chr6 41298521 41298635 -141116607 - MIR3 SINE MIR -72 136 15 1374 114 0 0 chr6 41298706 41298720 -141116522 + AluSg/x SINE Alu 120 133 -179 2716 45 0 0 chr6 41298720 41299028 -141116214 + AluYb8 SINE Alu 1 308 -10 1374 114 0 0 chr6 41299028 41299206 -141116036 + AluSg/x SINE Alu 132 312 0 2209 139 0 0 chr6 41299360 41299670 -141115572 + AluSx SINE Alu 1 310 -2 970 177 54 5 chr6 41299670 41299873 -141115369 + L1MB7 LINE L1 4833 5045 -1101 2232 119 10 13 chr6 41299873 41300185 -141115057 + AluY SINE Alu 1 311 0 4109 155 35 32 chr6 41300191 41301152 -141114090 + L1MB7 LINE L1 5146 6110 -74 1738 154 51 20 chr6 41301164 41301456 -141113786 - AluJb SINE Alu -11 301 1 23 0 0 0 chr6 41301464 41301487 -141113755 + AT_rich Low_complexity Low_complexity 1 23 0 217 211 105 0 chr6 41301506 41301563 -141113679 + MIR SINE MIR 194 256 -6 2044 137 0 13 chr6 41301640 41301939 -141113303 - AluSx SINE Alu -17 295 1 200 282 111 77 chr6 41301996 41302113 -141113129 - L2 LINE L2 -40 3273 3153 2285 95 0 3 chr6 41302489 41302785 -141112457 - AluSq SINE Alu -18 295 1 2584 71 0 6 chr6 41303225 41303572 -141111670 + AluY SINE Alu 1 311 0 247 183 42 70 chr6 41303758 41303829 -141111413 + MER5A DNA MER1_type 7 75 -114 * 582 196 123 43 chr6 41303769 41303829 -141111413 - MER5A DNA MER1_type -3 186 132 2242 114 0 0 chr6 41303829 41304127 -141111115 + AluSx SINE Alu 2 299 -13 582 196 123 43 chr6 41304127 41304229 -141111013 - MER5A DNA MER1_type -57 132 11 405 0 0 0 chr6 41304256 41304301 -141110941 + (TG)n Simple_repeat Simple_repeat 2 46 0 2247 88 3 0 chr6 41304303 41304587 -141110655 - AluSp SINE Alu -28 285 1 1848 151 3 49 chr6 41304668 41304992 -141110250 - AluJb SINE Alu 0 312 4 1857 106 71 21 chr6 41305298 41305580 -141109662 - AluSc SINE Alu 0 309 14 1134 82 0 0 chr6 41305581 41305716 -141109526 - AluSq/x SINE Alu -177 135 1 280 247 79 56 chr6 41306075 41306164 -141109078 + MIR3 SINE MIR 96 186 -22 768 99 0 0 chr6 41306174 41306285 -141108957 + (CA)n Simple_repeat Simple_repeat 1 111 0 1242 97 21 5 chr6 41306710 41306896 -141108346 + MER2 DNA MER2_type 22 210 -135 1118 166 0 0 chr6 41306906 41307081 -141108161 - AluSg/x SINE Alu -3 307 133 231 36 0 0 chr6 41307081 41307109 -141108133 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2158 81 41 0 chr6 41307109 41307380 -141107862 - AluSg SINE Alu -28 282 1 375 213 13 0 chr6 41307402 41307477 -141107765 + MER2 DNA MER2_type 269 344 -1 195 69 0 0 chr6 41307970 41307999 -141107243 + (TA)n Simple_repeat Simple_repeat 1 29 0 1267 206 31 35 chr6 41307999 41308154 -141107088 - AluSp SINE Alu -25 288 133 2601 71 0 0 chr6 41308154 41308463 -141106779 - AluY SINE Alu 0 311 3 1267 206 31 35 chr6 41308463 41308593 -141106649 - AluSp SINE Alu -180 133 4 277 137 39 0 chr6 41308594 41308645 -141106597 - AluJb SINE Alu -165 137 85 2339 86 3 0 chr6 41308686 41308977 -141106265 + AluSp SINE Alu 1 292 -21 252 0 0 0 chr6 41308977 41309005 -141106237 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2262 122 0 0 chr6 41309141 41309435 -141105807 + AluJb SINE Alu 1 294 -18 982 83 0 0 chr6 41309530 41309698 -141105544 + AluSg/x SINE Alu 163 330 0 771 257 155 48 chr6 41309915 41310151 -141105091 - MLT1F1 LTR MaLR -7 560 351 8041 10 0 0 chr6 41310151 41311749 -141103493 - L1PA2 LINE L1 0 6155 4560 771 257 155 48 chr6 41311749 41312004 -141103238 - MLT1F1 LTR MaLR -216 351 11 2072 128 10 13 chr6 41312049 41312353 -141102889 - AluJb SINE Alu -9 303 1 2156 139 0 0 chr6 41312899 41313201 -141102041 - AluSx SINE Alu -10 302 1 2154 90 0 84 chr6 41313336 41313659 -141101583 - AluSp SINE Alu -17 296 1 1891 162 10 0 chr6 41313906 41314196 -141101046 - AluJo SINE Alu -19 293 1 2096 93 30 4 chr6 41315055 41315361 -141099881 - AluSc SINE Alu 0 315 3 305 151 178 14 chr6 41315361 41315434 -141099808 + L1ME LINE L1 5578 5662 -459 1787 177 33 21 chr6 41318834 41319167 -141096075 + MER1B DNA MER1_type 1 337 0 2047 134 0 7 chr6 41319277 41319594 -141095648 + AluJb SINE Alu 1 315 0 193 274 55 82 chr6 41320049 41320122 -141095120 - L2 LINE L2 -48 3265 3195 453 203 173 12 chr6 41320244 41320370 -141094872 - MIR SINE MIR -63 145 41 1887 150 17 17 chr6 41320370 41320664 -141094578 - AluJb SINE Alu -18 294 1 453 203 173 12 chr6 41320664 41320675 -141094567 - MIR SINE MIR -167 41 33 2251 104 7 3 chr6 41320675 41320974 -141094268 - AluSq SINE Alu -13 300 1 1097 183 15 5 chr6 41321923 41322120 -141093122 - AluJo SINE Alu -113 199 1 2161 113 10 0 chr6 41322491 41322784 -141092458 - AluSx SINE Alu -16 296 1 1002 102 0 0 chr6 41322784 41322911 -141092331 - AluJo/FLAM SINE Alu -183 129 3 2414 88 0 0 chr6 41324358 41324663 -141090579 + AluSc SINE Alu 1 305 -4 2462 77 0 0 chr6 41325777 41326074 -141089168 - AluY SINE Alu -14 297 1 2262 97 0 3 chr6 41326266 41326555 -141088687 - AluSc SINE Alu -21 288 1 2448 57 7 0 chr6 41326812 41327109 -141088133 - AluY SINE Alu -12 299 1 232 188 78 47 chr6 41327690 41327754 -141087488 + AluJb SINE Alu 118 183 -119 2343 149 117 2 chr6 41327754 41328243 -141086999 + L1MC1 LINE L1 5789 6333 0 370 214 0 79 chr6 41328857 41328949 -141086293 + L1MB2 LINE L1 5974 6055 -116 910 143 0 0 chr6 41328949 41329082 -141086160 + FLAM_C SINE Alu 1 133 0 370 214 0 79 chr6 41329082 41329115 -141086127 + L1MB2 LINE L1 6055 6089 -82 1441 122 168 34 chr6 41329115 41329377 -141085865 + AluJb SINE Alu 1 297 -5 1336 140 97 4 chr6 41329398 41329677 -141085565 + L1MA7 LINE L1 3289 3593 -2553 7203 132 39 22 chr6 41329699 41330020 -141085222 + L1MA7 LINE L1 3880 4194 -2097 1828 157 7 20 chr6 41330020 41330314 -141084928 - AluJo SINE Alu -22 290 1 7203 132 39 22 chr6 41330314 41330626 -141084616 + L1MA7 LINE L1 4194 4499 -1792 1518 192 89 0 chr6 41330626 41330907 -141084335 - AluSg SINE Alu -4 306 1 7203 132 39 22 chr6 41330907 41331081 -141084161 + L1MA7 LINE L1 4499 4669 -1622 1859 159 3 3 chr6 41331081 41331377 -141083865 + AluJo SINE Alu 1 296 -16 7203 132 39 22 chr6 41331377 41332398 -141082844 + L1MA7 LINE L1 4669 5746 -545 826 182 88 6 chr6 41332471 41332652 -141082590 + MER46A DNA MER2_type 41 236 0 1197 132 25 33 chr6 41332652 41332894 -141082348 + L1MA7 LINE L1 5786 6025 -266 310 304 143 22 chr6 41333538 41333768 -141081474 - L2 LINE L2 -129 3184 2927 * 1058 288 156 39 chr6 41333760 41333986 -141081256 - L2 LINE L2 -544 2770 2572 2000 129 31 0 chr6 41333986 41334280 -141080962 - AluSx SINE Alu -9 303 1 1058 288 156 39 chr6 41334280 41334650 -141080592 - L2 LINE L2 -742 2572 2104 316 265 0 0 chr6 41335657 41335725 -141079517 - MER2 DNA MER2_type -1 344 277 1480 169 3 98 chr6 41335764 41336089 -141079153 + AluJo SINE Alu 1 294 -8 1024 155 43 29 chr6 41336119 41336326 -141078916 - MER2 DNA MER2_type -135 210 1 2117 152 0 0 chr6 41336759 41337055 -141078187 - AluSx SINE Alu -14 298 3 2373 89 0 3 chr6 41337826 41338130 -141077112 + AluY SINE Alu 1 303 -8 304 210 88 59 chr6 41338410 41338546 -141076696 + MER77 LTR ERV1 23 202 -403 2010 116 30 0 chr6 41338566 41338833 -141076409 - AluSq SINE Alu -38 275 1 858 272 171 50 chr6 41338833 41339355 -141075887 + MER21B LTR ERV1 130 714 -149 218 263 32 32 chr6 41339372 41339467 -141075775 - L2 LINE L2 -50 3263 3169 890 118 0 0 chr6 41340450 41340569 -141074673 - FLAM_C SINE Alu -19 124 6 256 217 76 71 chr6 41340903 41341101 -141074141 - L1MC5 LINE L1 -32 7929 7731 1354 252 164 36 chr6 41341167 41342094 -141073148 + HAL1 LINE L1 1308 2353 -154 1140 221 39 4 chr6 41342225 41342456 -141072786 + MER8 DNA MER2_type 1 239 0 227 197 225 0 chr6 41342578 41342649 -141072593 + L2 LINE L2 3186 3272 0 2306 65 0 21 chr6 41342668 41342958 -141072284 - AluY SINE Alu -15 296 13 772 124 10 72 chr6 41342988 41343179 -141072063 + MSTC LTR MaLR 1 184 -212 714 220 95 125 chr6 41343395 41343763 -141071479 - L2 LINE L2 -15 3298 2942 288 205 179 0 chr6 41343782 41343860 -141071382 - L2 LINE L2 -515 2799 2708 935 286 140 3 chr6 41343862 41344247 -141070995 + L1MA2 LINE L1 10 447 -6402 444 314 91 43 chr6 41344248 41344458 -141070784 + L1MA2 LINE L1 558 777 -6072 3515 202 88 20 chr6 41344847 41344880 -141070362 + L1MA2 LINE L1 1078 1107 -5742 252 0 0 0 chr6 41344880 41344908 -141070334 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3515 202 88 20 chr6 41344908 41345632 -141069610 + L1MA2 LINE L1 1107 1780 -5069 207 0 0 0 chr6 41345632 41345655 -141069587 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3515 202 88 20 chr6 41345655 41345689 -141069553 + L1MA2 LINE L1 1780 1810 -5039 1754 153 48 14 chr6 41345689 41345984 -141069258 + AluJo SINE Alu 1 305 -7 3515 202 88 20 chr6 41345984 41346105 -141069137 + L1MA2 LINE L1 1810 2055 -4794 993 173 24 12 chr6 41346109 41346277 -141068965 + FRAM SINE Alu 1 162 -14 27 49 0 0 chr6 41346277 41346318 -141068924 + AT_rich Low_complexity Low_complexity 1 41 0 504 175 0 10 chr6 41346323 41346426 -141068816 + L1MA2 LINE L1 2164 2265 -4584 210 37 0 0 chr6 41346427 41346454 -141068788 + (AGGGGG)n Simple_repeat Simple_repeat 3 29 0 1457 84 40 44 chr6 41346454 41346762 -141068480 + L1MA2 LINE L1 2203 2487 -4361 * 6560 105 22 14 chr6 41346761 41348146 -141067096 + L1MA2 LINE L1 5606 7006 0 4171 170 78 16 chr6 41348159 41349110 -141066132 + L1PB4 LINE L1 4547 5637 -519 2225 97 0 10 chr6 41349110 41349419 -141065823 + AluSc SINE Alu 1 306 -3 4171 170 78 16 chr6 41349419 41349974 -141065268 + L1PB4 LINE L1 5637 6156 0 403 248 29 22 chr6 41349974 41350111 -141065131 - L2 LINE L2 -613 2701 2564 2135 122 0 3 chr6 41350340 41350634 -141064608 + AluSx SINE Alu 1 293 -19 2198 83 3 41 chr6 41350776 41351090 -141064152 - AluSp SINE Alu -11 302 1 249 220 110 37 chr6 41351192 41351301 -141063941 + L1ME LINE L1 5578 5694 -427 276 148 19 0 chr6 41351534 41351588 -141063654 + L1MC5 LINE L1 7813 7867 -94 210 139 0 0 chr6 41353250 41353286 -141061956 + (TTC)n Simple_repeat Simple_repeat 2 37 0 606 160 65 35 chr6 41354242 41354411 -141060831 - L1MB2 LINE L1 -6 6165 5992 1679 199 7 7 chr6 41354539 41354846 -141060396 - AluJb SINE Alu -5 307 1 223 296 136 30 chr6 41354895 41355027 -141060215 - MIR SINE MIR -105 157 12 2471 57 0 0 chr6 41356299 41356596 -141058646 - AluSx SINE Alu -15 297 1 2389 71 0 3 chr6 41356636 41356933 -141058309 - AluY SINE Alu -15 296 1 1604 257 87 37 chr6 41357872 41358058 -141057184 + L1MC4 LINE L1 6766 6941 -1101 1711 114 149 4 chr6 41358058 41358320 -141056922 - AluSg1 SINE Alu -9 300 1 1604 257 87 37 chr6 41358320 41358965 -141056277 + L1MC4 LINE L1 6941 7638 -404 686 233 74 25 chr6 41358968 41359161 -141056081 + L1ME LINE L1 5417 5622 -540 1942 144 0 16 chr6 41359161 41359467 -141055775 + AluJb SINE Alu 1 301 -11 2123 257 74 23 chr6 41359481 41360367 -141054875 + L1MEc LINE L1 34 1023 -5373 2011 118 7 14 chr6 41360367 41360663 -141054579 + AluSg SINE Alu 1 294 -16 2123 257 74 23 chr6 41360663 41360807 -141054435 + L1MEc LINE L1 1023 1158 -5238 570 275 58 6 chr6 41360942 41361113 -141054129 + L1MC5 LINE L1 6645 6824 -1137 8563 139 82 39 chr6 41361162 41361615 -141053627 + L1M4c LINE L1 18 450 -5934 2005 134 14 3 chr6 41361615 41361906 -141053336 + AluSx SINE Alu 1 294 -18 8563 139 82 39 chr6 41361906 41362071 -141053171 + L1M4c LINE L1 450 606 -5778 1809 180 3 7 chr6 41362071 41362376 -141052866 + AluJo SINE Alu 1 304 -8 8563 139 82 39 chr6 41362376 41362596 -141052646 + L1M4c LINE L1 606 815 -5569 1567 178 36 46 chr6 41362596 41362899 -141052343 + AluJb SINE Alu 1 300 -12 8563 139 82 39 chr6 41362899 41363247 -141051995 + L1M4c LINE L1 815 1147 -5237 2375 97 10 0 chr6 41363247 41363556 -141051686 + AluSx SINE Alu 1 312 0 8563 139 82 39 chr6 41363556 41364222 -141051020 + L1M4c LINE L1 1147 1953 -4431 237 155 0 0 chr6 41364227 41364285 -141050957 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1584 213 23 11 chr6 41364285 41364721 -141050521 + L1M4c LINE L1 2447 2887 -3495 366 139 444 0 chr6 41364717 41364825 -141050417 + L1MB3 LINE L1 6016 6171 0 * 816 80 0 0 chr6 41364835 41364869 -141050373 + (TAG)n Simple_repeat Simple_repeat 1 147 0 816 80 0 0 chr6 41364869 41364982 -141050260 + (TAG)n Simple_repeat Simple_repeat 2 114 0 1453 163 96 8 chr6 41365150 41365401 -141049841 - AluJo SINE Alu -39 273 1 605 202 166 0 chr6 41365403 41365596 -141049646 + L1MC5 LINE L1 7686 7910 -51 2236 93 0 0 chr6 41365633 41365913 -141049329 - AluSg SINE Alu -30 280 1 1812 120 102 4 chr6 41365943 41366217 -141049025 + AluSg SINE Alu 1 301 -9 2336 71 3 3 chr6 41366544 41366839 -141048403 - AluY SINE Alu -16 295 1 2039 83 4 0 chr6 41367525 41367777 -141047465 + AluSx SINE Alu 1 253 -59 351 0 0 0 chr6 41368067 41368106 -141047136 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 0 0 0 chr6 41368105 41368137 -141047105 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 266 89 44 0 chr6 41368833 41368878 -141046364 + CT-rich Low_complexity Low_complexity 2 48 0 2129 104 3 3 chr6 41368889 41369186 -141046056 - AluSx SINE Alu -15 297 1 417 187 53 0 chr6 41370088 41370163 -141045079 + FRAM/FAM SINE Alu 1 78 -98 332 340 115 26 chr6 41370186 41370342 -141044900 - MIR3 SINE MIR -37 171 2 1658 95 126 70 chr6 41372174 41372308 -141042934 + AluSq SINE Alu 3 128 -185 2197 98 3 3 chr6 41372308 41372619 -141042623 + AluSx SINE Alu 1 311 0 2453 51 0 35 chr6 41372623 41372935 -141042307 + AluY SINE Alu 1 301 -10 1658 95 126 70 chr6 41372935 41373079 -141042163 + AluSq SINE Alu 130 303 -10 278 259 69 30 chr6 41373374 41373505 -141041737 + L1ME4a LINE L1 5984 6119 -2 2183 109 0 35 chr6 41374240 41374553 -141040689 + AluSq SINE Alu 1 302 -11 230 135 0 0 chr6 41374803 41374840 -141040402 - L1ME4a LINE L1 -113 6008 5972 274 172 5 0 chr6 41374884 41374945 -141040297 - L1P5 LINE L1 -575 5579 5518 1870 158 0 0 chr6 41375191 41375457 -141039785 + AluSx SINE Alu 16 281 -31 395 16 62 0 chr6 41375460 41375524 -141039718 + (CAA)n Simple_repeat Simple_repeat 2 69 0 573 248 105 35 chr6 41375743 41376001 -141039241 + Charlie8 DNA MER1_type 1522 1797 -620 1896 168 0 0 chr6 41376009 41376301 -141038941 + AluJb SINE Alu 1 292 -20 2111 112 54 0 chr6 41376553 41376847 -141038395 + AluSg SINE Alu 1 310 0 237 270 120 75 chr6 41376863 41377370 -141037872 + HAL1 LINE L1 788 1317 -1190 727 275 174 31 chr6 41377398 41377852 -141037390 + HAL1 LINE L1 1405 1923 -584 297 0 0 0 chr6 41378242 41378275 -141036967 + (TG)n Simple_repeat Simple_repeat 2 34 0 3648 161 67 99 chr6 41378275 41379201 -141036041 + MER21A LTR ERV1 29 924 -7 1272 150 40 9 chr6 41379228 41379454 -141035788 + L1MB7 LINE L1 5471 5703 -481 2171 167 84 9 chr6 41379585 41380035 -141035207 + L1MB7 LINE L1 5688 6171 -13 1676 175 11 0 chr6 41380334 41380614 -141034628 - AluJb SINE Alu -25 287 5 2797 111 22 22 chr6 41380882 41381333 -141033909 + L1PB2 LINE L1 5696 6146 -5 1156 142 0 0 chr6 41381382 41381544 -141033698 + AluSg/x SINE Alu 125 286 -24 2181 106 10 0 chr6 41381689 41381981 -141033261 + AluSx SINE Alu 3 297 -15 217 266 16 16 chr6 41382036 41382100 -141033142 + L2 LINE L2 2782 2845 -469 383 213 244 63 chr6 41382109 41382330 -141032912 + L2 LINE L2 3002 3262 -51 2265 104 3 22 chr6 41382526 41382844 -141032398 + AluSx SINE Alu 1 312 0 462 255 74 46 chr6 41382919 41383135 -141032107 + MIR SINE MIR 11 232 -30 426 269 21 28 chr6 41383187 41383328 -141031914 - L2 LINE L2 -1 3312 3173 786 169 8 8 chr6 41383680 41383810 -141031432 + FLAM_A SINE Alu 1 130 -3 1591 168 34 81 chr6 41383968 41384378 -141030864 + MLT1B LTR MaLR 1 621 -5 1518 154 44 63 chr6 41384933 41385251 -141029991 + AluJo SINE Alu 1 312 0 877 135 0 23 chr6 41385803 41385936 -141029306 + FLAM_C SINE Alu 1 130 -3 2226 106 7 0 chr6 41386040 41386332 -141028910 + AluSx SINE Alu 5 298 -14 1405 221 12 0 chr6 41386652 41386910 -141028332 - AluJb SINE Alu -51 261 1 2371 95 6 19 chr6 41387325 41387642 -141027600 + AluSq SINE Alu 1 313 0 1554 171 38 51 chr6 41387663 41387979 -141027263 + AluJo SINE Alu 1 312 0 449 261 80 0 chr6 41387979 41388117 -141027125 + Charlie8 DNA MER1_type 82 230 -2187 946 246 60 47 chr6 41388451 41389007 -141026235 + L1MC5 LINE L1 6347 6925 -883 * 1395 192 52 60 chr6 41388974 41389031 -141026211 + L1MB8 LINE L1 5801 5857 -321 2089 132 0 0 chr6 41389031 41389319 -141025923 - AluSx SINE Alu -12 300 13 1395 192 52 60 chr6 41389319 41389642 -141025600 + L1MB8 LINE L1 5857 6178 0 844 148 96 57 chr6 41389740 41389970 -141025272 + L1MC5 LINE L1 7071 7309 -652 314 228 239 20 chr6 41389990 41390230 -141025012 + L1MC5 LINE L1 7493 7793 -168 2341 117 3 0 chr6 41390230 41390539 -141024703 + AluSq SINE Alu 1 310 -3 314 228 239 20 chr6 41390539 41390553 -141024689 + L1MC5 LINE L1 7793 7803 -158 1402 141 84 68 chr6 41390587 41390956 -141024286 + THE1C LTR MaLR 1 375 0 8484 122 125 34 chr6 41390956 41392404 -141022838 + THE1C-int LTR MaLR 1 1580 0 1708 117 74 80 chr6 41392404 41392781 -141022461 + THE1C LTR MaLR 1 375 0 2384 96 3 0 chr6 41392788 41393089 -141022153 - AluSp SINE Alu -11 302 1 8030 100 34 0 chr6 41393093 41394239 -141021003 + Tigger1 DNA MER2_type 653 1837 -581 954 83 0 0 chr6 41394239 41394359 -141020883 + FLAM_C SINE Alu 1 120 -23 28 0 0 0 chr6 41394370 41394398 -141020844 + AT_rich Low_complexity Low_complexity 1 28 0 812 188 0 0 chr6 41394403 41394536 -141020706 - FLAM_A SINE Alu 0 133 1 3259 129 61 48 chr6 41394536 41394858 -141020384 + Tigger1 DNA MER2_type 1823 2158 -260 1476 179 3 70 chr6 41394858 41395170 -141020072 + AluJo SINE Alu 1 291 -21 3259 129 61 48 chr6 41395170 41395435 -141019807 + Tigger1 DNA MER2_type 2158 2418 0 1764 167 42 3 chr6 41395590 41395878 -141019364 - AluJo SINE Alu -13 299 1 696 146 0 0 chr6 41396210 41396320 -141018922 + AluSg/x SINE Alu 190 299 -10 2354 109 3 0 chr6 41396323 41396626 -141018616 + AluSx SINE Alu 1 304 -8 2458 93 0 3 chr6 41396770 41397083 -141018159 - AluSp SINE Alu -1 312 1 668 242 73 50 chr6 41397289 41397591 -141017651 + L2 LINE L2 3003 3311 -2 2076 127 14 0 chr6 41397611 41397902 -141017340 - AluSq SINE Alu -18 295 1 2309 97 0 13 chr6 41397928 41398237 -141017005 + AluY SINE Alu 1 305 -6 311 234 37 28 chr6 41398294 41398401 -141016841 + L1ME LINE L1 5636 5743 -378 2349 93 0 0 chr6 41398497 41398799 -141016443 + AluY SINE Alu 1 302 -9 414 0 0 0 chr6 41398804 41398850 -141016392 + (CA)n Simple_repeat Simple_repeat 2 47 0 28 0 0 0 chr6 41398851 41398879 -141016363 + AT_rich Low_complexity Low_complexity 1 28 0 987 164 0 7 chr6 41398881 41399033 -141016209 + AluSq SINE Alu 134 284 -29 210 105 0 0 chr6 41399033 41399071 -141016171 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2073 112 7 11 chr6 41399583 41399892 -141015350 + AluSx SINE Alu 1 308 0 256 240 190 66 chr6 41400147 41400268 -141014974 + MIR SINE MIR 15 150 -112 274 274 36 0 chr6 41400683 41400767 -141014475 - MIR SINE MIR -155 107 21 246 136 0 0 chr6 41400983 41401027 -141014215 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 2035 125 17 17 chr6 41401030 41401327 -141013915 + AluSx SINE Alu 6 302 -10 22 109 0 0 chr6 41403410 41403502 -141011740 + GC_rich Low_complexity Low_complexity 1 92 0 201 208 28 56 chr6 41403910 41403982 -141011260 + C-rich Low_complexity Low_complexity 3 72 0 180 107 0 0 chr6 41404223 41404251 -141010991 + MIR SINE MIR 116 143 -119 1108 139 115 0 chr6 41404741 41404949 -141010293 - MER58B DNA MER1_type -3 338 107 300 25 0 0 chr6 41404961 41405001 -141010241 - LTR46 LTR ERV1 0 460 421 793 196 12 12 chr6 41405001 41405164 -141010078 - AluJb SINE Alu -30 282 120 332 289 41 0 chr6 41405848 41405969 -141009273 + L2 LINE L2 3188 3313 0 2381 83 3 7 chr6 41405974 41406276 -141008966 + AluSc SINE Alu 1 301 -8 506 281 81 11 chr6 41406374 41406559 -141008683 - L3 LINE CR1 -1191 386 189 1271 197 44 12 chr6 41406769 41407018 -141008224 - AluJb SINE Alu -15 297 41 726 189 8 0 chr6 41407066 41407198 -141008044 + FLAM_C SINE Alu 1 133 0 869 179 106 0 chr6 41407766 41407945 -141007297 - LTR33 LTR ERVL -20 501 304 2478 67 0 44 chr6 41407969 41408284 -141006958 + AluSq SINE Alu 1 301 -12 1774 164 32 93 chr6 41408284 41408692 -141006550 - MLT1B LTR MaLR -7 383 1 982 163 109 10 chr6 41408740 41408942 -141006300 - LTR33 LTR ERVL -299 222 1 2404 66 31 0 chr6 41409967 41410255 -141004987 - AluY SINE Alu -14 297 1 2031 131 0 14 chr6 41410643 41410933 -141004309 + AluSx SINE Alu 1 286 -26 2261 106 0 0 chr6 41411292 41411593 -141003649 + AluSg SINE Alu 1 301 -9 357 234 190 57 chr6 41411617 41411775 -141003467 - MIR SINE MIR -81 181 3 194 348 4 85 chr6 41411782 41412018 -141003224 - L2 LINE L2 -115 3157 2941 1667 159 10 52 chr6 41412045 41412353 -141002889 + AluJo SINE Alu 1 295 -17 200 263 0 0 chr6 41412353 41412391 -141002851 + (CA)n Simple_repeat Simple_repeat 1 38 0 1311 181 4 4 chr6 41412576 41412813 -141002429 + L1M4 LINE L1 3952 4188 -1958 2413 193 156 30 chr6 41412814 41413575 -141001667 - Charlie2 DNA MER1_type -151 2711 1855 291 236 57 28 chr6 41413579 41413685 -141001557 - Charlie2 DNA MER1_type -2460 322 214 364 213 25 106 chr6 41413688 41413848 -141001394 + L2 LINE L2 3160 3306 -7 4594 119 115 134 chr6 41413891 41415292 -140999950 + pTR5 LTR ERV1 73 2400 -38 185 257 171 29 chr6 41415419 41415524 -140999718 + MIR SINE MIR 31 150 -112 192 237 0 0 chr6 41415795 41415833 -140999409 + MIR SINE MIR 114 151 -111 1155 73 0 0 chr6 41415833 41415969 -140999273 + AluSq/x SINE Alu 1 136 -177 2246 114 3 0 chr6 41415969 41416267 -140998975 + AluSx SINE Alu 1 299 -13 304 248 53 18 chr6 41416268 41416381 -140998861 + MIR SINE MIR 143 259 -3 183 246 0 0 chr6 41417640 41417697 -140997545 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 1765 168 6 32 chr6 41417922 41418238 -140997004 - AluSx SINE Alu -4 308 1 1004 258 84 61 chr6 41418243 41418571 -140996671 - L1MCc LINE L1 -4810 2312 1993 2418 95 0 0 chr6 41418571 41418867 -140996375 + AluSg SINE Alu 1 296 -14 1004 258 84 61 chr6 41418867 41419520 -140995722 - L1MCc LINE L1 -5129 1993 1094 2188 125 27 35 chr6 41419750 41420117 -140995125 + THE1B LTR MaLR 1 364 0 827 158 0 15 chr6 41420269 41420402 -140994840 - FLAM_C SINE Alu -1 132 2 783 204 72 95 chr6 41420507 41420616 -140994626 - L1MC5 LINE L1 -397 7564 7454 841 159 0 0 chr6 41420616 41420748 -140994494 - FLAM_A SINE Alu -1 132 1 783 204 72 95 chr6 41420748 41420942 -140994300 - L1MC5 LINE L1 -507 7454 7268 394 229 0 0 chr6 41420946 41421016 -140994226 - MER2 DNA MER2_type -1 344 275 873 129 0 0 chr6 41421023 41421139 -140994103 + FLAM_C SINE Alu 9 124 -19 21 0 0 0 chr6 41421165 41421186 -140994056 + AT_rich Low_complexity Low_complexity 1 21 0 616 156 92 0 chr6 41421188 41421297 -140993945 + MLT1H LTR MaLR 431 549 0 197 303 15 15 chr6 41421353 41421419 -140993823 + L3 LINE CR1 1510 1575 -2 1655 106 76 53 chr6 41422082 41422385 -140992857 + THE1C LTR MaLR 1 310 -65 2717 85 6 0 chr6 41422386 41422739 -140992503 + THE1A LTR MaLR 1 355 0 12140 83 12 0 chr6 41422739 41424300 -140990942 + THE1A-int LTR MaLR 1 1580 0 2718 85 34 26 chr6 41424300 41424722 -140990520 + THE1A LTR MaLR 1 355 0 340 217 36 24 chr6 41425306 41425389 -140989853 + L2 LINE L2 3225 3308 -5 1608 181 33 20 chr6 41427196 41427316 -140987926 + AluJb SINE Alu 2 119 -193 230 73 24 0 chr6 41427316 41427357 -140987885 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1608 181 33 20 chr6 41427357 41427535 -140987707 + AluJb SINE Alu 119 304 -8 37 32 0 16 chr6 41427653 41427670 -140987572 + AT_rich Low_complexity Low_complexity 1 17 -44 2188 129 0 0 chr6 41427670 41427956 -140987286 - AluSx SINE Alu -26 286 1 37 32 0 16 chr6 41427956 41428000 -140987242 + AT_rich Low_complexity Low_complexity 17 61 0 257 265 128 51 chr6 41428524 41428641 -140986601 + L2 LINE L2 3122 3247 -25 1076 301 51 13 chr6 41428667 41429038 -140986204 + L2 LINE L2 1955 2348 -966 1986 129 11 0 chr6 41429038 41429340 -140985902 - AluSx SINE Alu 0 305 1 1076 301 51 13 chr6 41429340 41429415 -140985827 + L2 LINE L2 2348 2419 -895 1608 203 7 7 chr6 41429505 41429796 -140985446 - AluJo SINE Alu -21 291 1 2063 137 0 13 chr6 41429831 41430137 -140985105 - AluSx SINE Alu -10 302 1 398 343 102 7 chr6 41430146 41430449 -140984793 + L1M4 LINE L1 4036 4367 -1779 1986 166 0 0 chr6 41430455 41430757 -140984485 + AluJb SINE Alu 1 302 -10 412 287 34 49 chr6 41430789 41431113 -140984129 + L1M4 LINE L1 4456 4774 -1372 2257 117 0 0 chr6 41431113 41431420 -140983822 + AluSx SINE Alu 1 307 -5 1343 164 71 61 chr6 41431595 41431906 -140983336 + MLT1A1 LTR MaLR 52 365 0 2234 115 7 0 chr6 41431960 41432256 -140982986 + AluSg SINE Alu 3 300 -10 21 0 0 0 chr6 41432463 41432484 -140982758 + AT_rich Low_complexity Low_complexity 1 21 0 2183 63 49 11 chr6 41432616 41432903 -140982339 - AluSc SINE Alu -11 298 1 2199 111 10 0 chr6 41433102 41433391 -140981851 - AluSg SINE Alu -18 292 1 2134 137 7 0 chr6 41434376 41434682 -140980560 - AluSg SINE Alu -2 308 1 2431 95 0 0 chr6 41435540 41435844 -140979398 + AluSg SINE Alu 1 304 -6 270 303 22 11 chr6 41436255 41436344 -140978898 + MIR SINE MIR 158 247 -15 338 324 94 0 chr6 41436480 41436650 -140978592 - MIR3 SINE MIR -7 201 16 2288 121 0 0 chr6 41437469 41437774 -140977468 + AluSx SINE Alu 1 305 -7 1513 158 7 86 chr6 41438765 41439069 -140976173 + AluJb SINE Alu 1 280 -32 980 177 0 0 chr6 41439099 41439257 -140975985 + AluJb SINE Alu 148 305 -7 2276 125 3 0 chr6 41439444 41439749 -140975493 + AluSp SINE Alu 1 306 -7 2008 134 7 0 chr6 41439749 41440039 -140975203 + AluSp SINE Alu 1 293 -20 22 0 0 0 chr6 41440175 41440197 -140975045 + AT_rich Low_complexity Low_complexity 1 22 0 2283 94 7 3 chr6 41440413 41440712 -140974530 - AluSq SINE Alu -13 300 1 1362 99 16 6 chr6 41441024 41441206 -140974036 + AluSx SINE Alu 1 184 -128 852 113 9 0 chr6 41441314 41441429 -140973813 + AluSq/x SINE Alu 1 116 -197 2087 101 77 0 chr6 41442704 41442991 -140972251 - AluSg SINE Alu -1 309 1 1907 153 3 25 chr6 41443180 41443494 -140971748 + AluSx SINE Alu 1 307 -5 232 227 107 27 chr6 41444124 41444199 -140971043 + MIR SINE MIR 106 186 -76 201 260 135 19 chr6 41444469 41444573 -140970669 + L2 LINE L2 1549 1664 -1650 2437 88 0 0 chr6 41444752 41445049 -140970193 + AluSg SINE Alu 1 297 -13 929 148 47 12 chr6 41445606 41445775 -140969467 - FRAM SINE Alu -8 168 1 700 152 8 53 chr6 41445817 41445937 -140969305 - REP3 LTR ERV -10 552 437 1509 214 80 35 chr6 41445937 41446422 -140968820 + MER84 LTR ERV1 1 507 0 700 152 8 53 chr6 41446422 41446433 -140968809 - REP3 LTR ERV -125 437 427 370 255 61 0 chr6 41446431 41446529 -140968713 + REP3 LTR ERV 352 455 -107 * 1872 161 7 3 chr6 41446733 41447031 -140968211 + AluJb SINE Alu 1 299 -13 2003 160 0 0 chr6 41447171 41447465 -140967777 + AluSx SINE Alu 1 294 -18 2154 133 0 3 chr6 41447491 41447792 -140967450 + AluSx SINE Alu 2 301 -11 305 193 200 30 chr6 41447958 41448093 -140967149 + L1ME4a LINE L1 5963 6120 -1 2586 67 0 9 chr6 41448203 41448518 -140966724 + AluSp SINE Alu 1 312 -1 2165 94 0 37 chr6 41448529 41448826 -140966416 + AluSx SINE Alu 15 300 -12 1904 124 29 0 chr6 41450657 41450931 -140964311 - AluSx SINE Alu -7 305 24 2059 119 0 0 chr6 41450955 41451232 -140964010 - AluSx SINE Alu -16 296 20 492 165 0 0 chr6 41451370 41451461 -140963781 + (TA)n Simple_repeat Simple_repeat 1 91 0 225 313 24 12 chr6 41451891 41451974 -140963268 + L2 LINE L2 3229 3312 -1 2370 104 0 0 chr6 41452124 41452432 -140962810 + AluSc SINE Alu 1 308 -1 2181 88 7 7 chr6 41453550 41453864 -140961378 + AluSq SINE Alu 1 314 0 400 233 92 37 chr6 41454386 41454549 -140960693 - MIR SINE MIR -70 192 21 695 155 95 0 chr6 41455099 41455215 -140960027 + FLAM_C SINE Alu 7 133 -10 1646 92 18 4 chr6 41456246 41456473 -140958769 - MER30 DNA MER1_type 0 230 1 2327 113 0 0 chr6 41456842 41457152 -140958090 + AluSx SINE Alu 1 310 -2 1961 142 0 65 chr6 41457540 41457864 -140957378 - AluSx SINE Alu -9 303 1 2331 105 3 0 chr6 41458438 41458742 -140956500 + AluSp SINE Alu 1 305 -8 2310 102 7 0 chr6 41458950 41459244 -140955998 + AluSq SINE Alu 1 296 -17 2278 68 34 14 chr6 41459357 41459650 -140955592 - AluY SINE Alu -12 299 1 21 0 0 0 chr6 41460249 41460270 -140954972 + AT_rich Low_complexity Low_complexity 1 21 0 803 181 73 136 chr6 41460493 41460609 -140954633 + L1M4 LINE L1 3556 3678 -2468 2332 101 0 3 chr6 41460609 41460907 -140954335 + AluSx SINE Alu 1 297 -15 803 181 73 136 chr6 41460907 41461144 -140954098 + L1M4 LINE L1 3678 3887 -2259 1761 169 12 35 chr6 41461639 41461958 -140953284 - AluJb SINE Alu 0 312 1 24 32 0 0 chr6 41461966 41461997 -140953245 + AT_rich Low_complexity Low_complexity 1 31 0 2478 64 3 0 chr6 41462002 41462298 -140952944 + AluY SINE Alu 1 297 -14 2167 140 7 0 chr6 41462772 41463079 -140952163 - AluSx SINE Alu -3 309 1 334 317 65 25 chr6 41463125 41463324 -140951918 + MIR SINE MIR 3 209 -53 2254 89 10 0 chr6 41463539 41463832 -140951410 + AluSx SINE Alu 3 298 -14 1728 169 0 37 chr6 41464165 41464491 -140950751 + AluJo SINE Alu 1 315 0 21 57 0 0 chr6 41465301 41465336 -140949906 + AT_rich Low_complexity Low_complexity 1 35 0 2203 119 0 10 chr6 41466351 41466661 -140948581 - AluSq SINE Alu -6 307 1 2137 141 0 6 chr6 41467117 41467430 -140947812 - AluSx SINE Alu -1 311 1 3886 119 23 16 chr6 41467559 41468165 -140947077 + MER4B LTR ERV1 1 610 0 2511 87 0 0 chr6 41468219 41468528 -140946714 + AluSg SINE Alu 1 309 -1 2767 117 10 48 chr6 41468695 41468831 -140946411 - L1MA8 LINE L1 0 6291 6151 2285 115 3 0 chr6 41468831 41469135 -140946107 - AluSp SINE Alu -3 310 6 2767 117 10 48 chr6 41469135 41469494 -140945748 - L1MA8 LINE L1 -140 6151 5815 29 0 0 0 chr6 41469494 41469523 -140945719 + AT_rich Low_complexity Low_complexity 1 29 0 1095 114 8 185 chr6 41469547 41469835 -140945407 - L1MA8 LINE L1 -385 5789 5585 2254 94 10 3 chr6 41470180 41470477 -140944765 - AluY SINE Alu -12 299 1 248 238 163 12 chr6 41470533 41470613 -140944629 - MLT1J LTR MaLR -315 196 105 2393 94 3 0 chr6 41470710 41471017 -140944225 - AluSx SINE Alu -4 308 1 2160 138 0 3 chr6 41471158 41471470 -140943772 + AluSx SINE Alu 1 311 -1 181 230 68 68 chr6 41471494 41471568 -140943674 + MIR SINE MIR 56 129 -133 1149 201 40 102 chr6 41471583 41471648 -140943594 - L1ME2 LINE L1 -1 6163 6096 2454 84 0 0 chr6 41471648 41471946 -140943296 - AluY SINE Alu -13 298 1 1149 201 40 102 chr6 41471946 41472283 -140942959 - L1ME2 LINE L1 -68 6096 5786 193 29 29 29 chr6 41472692 41472727 -140942515 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2285 110 3 0 chr6 41472734 41473043 -140942199 - AluSx SINE Alu -2 310 1 24 0 0 0 chr6 41473311 41473335 -140941907 + AT_rich Low_complexity Low_complexity 1 24 0 709 146 142 78 chr6 41473785 41473925 -140941317 + L1MA9 LINE L1 6060 6220 -92 2240 109 7 10 chr6 41473925 41474228 -140941014 + AluSx SINE Alu 1 302 -10 709 146 142 78 chr6 41474228 41474306 -140940936 + L1MA9 LINE L1 6220 6292 -20 1547 166 30 53 chr6 41475810 41476112 -140939130 - AluJo SINE Alu -17 295 1 24 53 0 0 chr6 41476366 41476404 -140938838 + AT_rich Low_complexity Low_complexity 1 38 0 852 168 0 29 chr6 41476550 41476687 -140938555 + FLAM_C SINE Alu 1 133 0 2688 48 0 0 chr6 41476909 41477220 -140938022 - AluY SINE Alu 0 311 1 2246 110 0 3 chr6 41477384 41477683 -140937559 - AluSx SINE Alu -14 298 1 554 232 111 53 chr6 41477730 41477920 -140937322 + MIR SINE MIR 14 214 -48 430 275 42 28 chr6 41478012 41478154 -140937088 - MER117 DNA MER1_type -52 145 2 500 266 70 8 chr6 41478316 41478444 -140936798 + MIR SINE MIR 21 156 -106 1036 141 0 41 chr6 41478447 41478617 -140936625 - AluJo SINE Alu -149 163 1 657 274 48 24 chr6 41478823 41479031 -140936211 - MIR SINE MIR -13 249 37 189 74 0 0 chr6 41479341 41479368 -140935874 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1090 134 0 0 chr6 41479371 41479520 -140935722 - AluJb SINE Alu -30 282 134 2211 121 0 0 chr6 41479559 41479857 -140935385 + AluSq SINE Alu 1 298 -15 2079 136 0 69 chr6 41479905 41480266 -140934976 + MER1B DNA MER1_type 2 337 0 2339 104 3 0 chr6 41481082 41481390 -140933852 + AluSp SINE Alu 3 311 -2 2326 103 6 3 chr6 41481689 41482000 -140933242 - AluSq SINE Alu -1 312 1 698 186 124 31 chr6 41483619 41483845 -140931397 - L1MC5 LINE L1 -45 7916 7670 862 201 225 99 chr6 41483890 41483934 -140931308 + MLT1F1 LTR MaLR 1 38 -529 2542 60 0 0 chr6 41483934 41484234 -140931008 - AluY SINE Alu -11 300 1 862 201 225 99 chr6 41484234 41484414 -140930828 + MLT1F1 LTR MaLR 38 194 -373 918 239 17 6 chr6 41484414 41484590 -140930652 + MER45A DNA AcHobo 1 178 0 862 201 225 99 chr6 41484590 41484737 -140930505 + MLT1F1 LTR MaLR 194 445 -122 435 174 65 11 chr6 41484811 41484903 -140930339 - L1MC5 LINE L1 -387 7574 7478 406 174 0 0 chr6 41484911 41484980 -140930262 - MLT1K LTR MaLR -9 579 511 1093 234 102 35 chr6 41485100 41485518 -140929724 - L1ME LINE L1 -431 5739 5350 2053 134 10 0 chr6 41485518 41485810 -140929432 - AluSx SINE Alu -17 295 1 1093 234 102 35 chr6 41485810 41486256 -140928986 - L1ME LINE L1 -820 5350 4734 2608 71 0 0 chr6 41486456 41486767 -140928475 - AluY SINE Alu 0 311 1 1793 182 7 7 chr6 41486870 41487177 -140928065 - AluJb SINE Alu 0 312 6 303 237 104 7 chr6 41487305 41487440 -140927802 - L1ME LINE L1 -1886 4260 4113 1748 120 32 52 chr6 41487464 41487772 -140927470 - AluJb SINE Alu -10 302 1 2829 214 60 23 chr6 41487976 41488723 -140926519 - L1MC4a LINE L1 -5 7803 7029 2031 145 0 0 chr6 41488934 41489216 -140926026 - AluSx SINE Alu -20 292 11 298 297 0 0 chr6 41489237 41489301 -140925941 - L2 LINE L2 -5 3267 3204 3736 219 88 11 chr6 41489610 41490644 -140924598 + L1ME1 LINE L1 3806 4919 -1227 2511 67 0 0 chr6 41490645 41490945 -140924297 + AluY SINE Alu 1 300 -11 932 156 6 50 chr6 41490955 41491102 -140924140 + FRAM SINE Alu 1 140 -172 261 0 0 0 chr6 41491102 41491131 -140924111 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 932 156 6 50 chr6 41491131 41491163 -140924079 + FRAM SINE Alu 140 172 -4 889 171 18 6 chr6 41491173 41491343 -140923899 + L1ME1 LINE L1 5319 5490 -869 5111 174 32 19 chr6 41491349 41491877 -140923365 + L1MD1 LINE L1 5149 5669 -573 2068 108 7 0 chr6 41491877 41492192 -140923050 + AluSx SINE Alu 1 317 0 5111 174 32 19 chr6 41492192 41492743 -140922499 + L1MD1 LINE L1 5669 6242 0 2808 209 45 23 chr6 41492737 41493340 -140921902 + L1ME1 LINE L1 5471 6090 -76 * 2375 105 0 0 chr6 41493340 41493645 -140921597 - AluSx SINE Alu -7 305 1 2808 209 45 23 chr6 41493645 41493683 -140921559 + L1ME1 LINE L1 6090 6126 -40 1963 157 0 3 chr6 41494417 41494711 -140920531 - AluJb SINE Alu -15 297 5 993 148 15 69 chr6 41495301 41495504 -140919738 - MER20 DNA MER1_type -24 195 4 810 181 176 42 chr6 41495945 41496006 -140919236 + MER20 DNA MER1_type 1 52 -167 2177 89 57 0 chr6 41496006 41496287 -140918955 - AluSx SINE Alu -15 297 1 810 181 176 42 chr6 41496287 41496418 -140918824 + MER20 DNA MER1_type 52 219 0 315 226 139 35 chr6 41496687 41496802 -140918440 - MIR3 SINE MIR -76 132 6 2136 98 47 0 chr6 41497406 41497702 -140917540 + AluSg SINE Alu 1 310 0 843 269 42 46 chr6 41497707 41497913 -140917329 - MIR SINE MIR -23 239 33 2334 92 0 16 chr6 41497913 41498217 -140917025 - AluSg SINE Alu -11 299 1 843 269 42 46 chr6 41498217 41498248 -140916994 - MIR SINE MIR -229 33 3 2364 92 0 3 chr6 41498794 41499099 -140916143 - AluSc SINE Alu -5 304 1 1330 171 60 4 chr6 41499132 41499383 -140915859 + Charlie4 DNA MER1_type 17 281 -1680 468 128 64 28 chr6 41499383 41499492 -140915750 + Charlie4 DNA MER1_type 1778 1890 -71 4733 166 35 70 chr6 41499493 41499696 -140915546 + L1MB4 LINE L1 4870 5079 -1101 2026 147 10 0 chr6 41499696 41500002 -140915240 + AluSx SINE Alu 1 309 -3 4733 166 35 70 chr6 41500002 41500159 -140915083 + L1MB4 LINE L1 5079 5240 -940 2136 111 0 10 chr6 41500159 41500476 -140914766 + AluSq SINE Alu 4 313 0 4733 166 35 70 chr6 41500476 41501494 -140913748 + L1MB4 LINE L1 5240 6180 0 362 207 35 11 chr6 41501494 41501581 -140913661 + Charlie4 DNA MER1_type 1873 1961 0 2093 134 3 0 chr6 41501735 41502027 -140913215 - AluSx SINE Alu -14 298 6 210 290 86 25 chr6 41502676 41502807 -140912435 - MIR3 SINE MIR -111 151 13 539 218 156 53 chr6 41502943 41503168 -140912074 + L2 LINE L2 3063 3310 -3 1432 145 4 13 chr6 41503213 41503440 -140911802 + AluJb SINE Alu 73 297 -15 371 348 61 6 chr6 41503753 41503917 -140911325 - MIR SINE MIR -8 254 82 585 225 25 25 chr6 41504402 41504562 -140910680 - Charlie8 DNA MER1_type -2181 236 77 544 97 0 0 chr6 41504592 41504664 -140910578 - Alu SINE Alu -14 295 224 900 63 0 0 chr6 41504664 41504775 -140910467 - AluY SINE Alu -200 111 1 2193 108 3 0 chr6 41504777 41505073 -140910169 - AluSx SINE Alu -15 297 1 1090 135 109 42 chr6 41505157 41505350 -140909892 - MER3 DNA MER1_type 0 209 4 353 99 113 42 chr6 41505685 41505756 -140909486 + MER5A DNA MER1_type 78 153 -36 300 166 181 45 chr6 41505753 41505862 -140909380 - MER5A DNA MER1_type -56 133 2 * 417 39 0 0 chr6 41505969 41506020 -140909222 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 2294 98 7 0 chr6 41506078 41506375 -140908867 + AluSx SINE Alu 6 304 -8 222 315 90 0 chr6 41507166 41507277 -140907965 - L2 LINE L2 0 3272 3152 188 263 88 0 chr6 41507619 41507676 -140907566 - L2 LINE L2 -20 3293 3232 412 248 18 28 chr6 41508056 41508165 -140907077 + L2 LINE L2 3203 3310 -3 308 310 129 0 chr6 41508165 41508281 -140906961 + L2 LINE L2 3142 3272 0 281 296 148 0 chr6 41508701 41508789 -140906453 - L2 LINE L2 -4 3309 3209 186 238 0 24 chr6 41509059 41509101 -140906141 - MIR SINE MIR -80 128 88 297 313 68 51 chr6 41509223 41509399 -140905843 + MER5A DNA MER1_type 2 180 -9 2308 87 0 10 chr6 41509427 41509736 -140905506 - AluSc SINE Alu -3 306 1 2409 43 7 0 chr6 41509865 41510168 -140905074 - AluSp SINE Alu 0 305 1 189 0 0 0 chr6 41511598 41511619 -140903623 + (T)n Simple_repeat Simple_repeat 1 21 0 217 155 36 24 chr6 41512687 41512771 -140902471 + (TA)n Simple_repeat Simple_repeat 2 86 0 2405 70 0 0 chr6 41513212 41513511 -140901731 + AluY SINE Alu 1 299 -12 604 249 70 108 chr6 41513723 41513825 -140901417 - MARNA DNA Mariner -19 567 463 2165 108 3 0 chr6 41513825 41514120 -140901122 - AluSx SINE Alu -16 296 1 604 249 70 108 chr6 41514120 41514210 -140901032 - MARNA DNA Mariner -123 463 371 2049 146 3 0 chr6 41514210 41514511 -140900731 - AluSx SINE Alu -10 302 1 604 249 70 108 chr6 41514511 41514734 -140900508 - MARNA DNA Mariner -215 371 167 834 186 0 0 chr6 41514748 41514888 -140900354 - FLAM_C SINE Alu -3 140 1 483 246 41 41 chr6 41515437 41515559 -140899683 - L2 LINE L2 -5 3267 3146 21 36 0 0 chr6 41515779 41515807 -140899435 + AT_rich Low_complexity Low_complexity 1 28 0 2248 116 0 0 chr6 41516127 41516421 -140898821 - AluSg SINE Alu -16 294 1 191 233 81 70 chr6 41516690 41516776 -140898466 - MIR SINE MIR -50 212 126 5179 120 20 69 chr6 41517541 41517693 -140897549 + Tigger1 DNA MER2_type 26 184 -2234 2444 94 0 0 chr6 41517693 41518002 -140897240 - AluSg SINE Alu 0 310 2 5179 120 20 69 chr6 41518002 41518748 -140896494 + Tigger1 DNA MER2_type 184 880 -1538 1884 123 0 96 chr6 41518748 41519080 -140896162 + AluSx SINE Alu 1 300 -12 3886 137 3 64 chr6 41519082 41519540 -140895702 + Tigger1 DNA MER2_type 1789 2273 -145 189 0 0 0 chr6 41519540 41519561 -140895681 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2084 121 0 3 chr6 41519566 41519848 -140895394 - AluSx SINE Alu -31 281 1 3886 137 3 64 chr6 41519848 41520054 -140895188 + Tigger1 DNA MER2_type 2277 2418 0 930 259 44 57 chr6 41520414 41520506 -140894736 - L2 LINE L2 -24 3289 3197 1439 138 25 105 chr6 41520506 41520831 -140894411 + AluJb SINE Alu 1 299 -13 930 259 44 57 chr6 41520831 41521349 -140893893 - L2 LINE L2 -116 3197 2687 180 77 0 0 chr6 41522277 41522303 -140892939 + (TG)n Simple_repeat Simple_repeat 2 27 0 2262 99 31 0 chr6 41522529 41522823 -140892419 + AluSx SINE Alu 1 303 -9 402 153 0 0 chr6 41522883 41522942 -140892300 - Tigger4(Zombi) DNA MER2_type -2672 59 1 1105 170 71 42 chr6 41522949 41523161 -140892081 - MER20 DNA MER1_type 0 219 2 322 315 165 0 chr6 41524925 41525052 -140890190 - MER5B DNA MER1_type -2 176 29 1704 158 3 56 chr6 41525283 41525606 -140889636 - AluJo SINE Alu -5 307 2 1713 158 0 40 chr6 41525651 41525948 -140889294 + AluJb SINE Alu 14 298 -14 2462 93 3 0 chr6 41526604 41526916 -140888326 - AluSp SINE Alu 0 313 1 811 143 8 0 chr6 41527400 41527526 -140887716 + FLAM_C SINE Alu 2 128 -5 1687 183 20 7 chr6 41527656 41527951 -140887291 + AluJb SINE Alu 1 299 -13 2518 68 0 3 chr6 41528333 41528644 -140886598 + AluY SINE Alu 1 310 -1 480 274 123 41 chr6 41529244 41529463 -140885779 - MIR SINE MIR -18 244 8 183 300 38 25 chr6 41529789 41529869 -140885373 - MIR SINE MIR -73 135 55 1957 268 128 132 chr6 41530047 41530371 -140884871 - L2 LINE L2 -274 3039 2715 1529 134 38 80 chr6 41530371 41530543 -140884699 - AluJo SINE Alu -11 301 123 2174 76 62 28 chr6 41530543 41530832 -140884410 - AluSq SINE Alu -14 299 1 2058 142 3 13 chr6 41530838 41531149 -140884093 - AluSx SINE Alu -4 308 1 1529 134 38 80 chr6 41531149 41531282 -140883960 - AluJo SINE Alu -194 118 2 1957 268 128 132 chr6 41531282 41533914 -140881328 - L2 LINE L2 -598 2715 87 2077 94 31 0 chr6 41533925 41534213 -140881029 - AluSq SINE Alu -15 298 2 274 220 23 130 chr6 41534254 41534431 -140880811 + L2 LINE L2 2795 2937 -335 792 239 61 65 chr6 41534437 41534700 -140880542 + MIR SINE MIR 1 262 0 180 308 170 51 chr6 41534695 41534948 -140880294 + L2 LINE L2 2943 3225 -88 * 730 178 81 22 chr6 41535103 41535288 -140879954 + MER58A DNA MER1_type 29 224 0 250 234 54 27 chr6 41535295 41535406 -140879836 + L1ME4a LINE L1 5959 6072 -49 24 53 0 0 chr6 41536129 41536167 -140879075 + AT_rich Low_complexity Low_complexity 1 38 0 876 113 0 70 chr6 41538456 41538598 -140876644 + FLAM_C SINE Alu 1 132 -1 192 172 0 103 chr6 41539165 41539223 -140876019 - MIR SINE MIR -62 146 95 234 378 0 0 chr6 41539228 41539310 -140875932 - L2 LINE L2 -2 3311 3230 334 296 87 20 chr6 41539821 41540017 -140875225 + L1ME4a LINE L1 5528 5736 -385 263 187 66 33 chr6 41540127 41540218 -140875024 + L1ME4a LINE L1 5955 6048 -73 1232 104 6 0 chr6 41540378 41540541 -140874701 + AluSp SINE Alu 136 299 -14 1370 165 75 15 chr6 41541423 41541689 -140873553 + AluJo SINE Alu 1 282 -30 2380 65 0 29 chr6 41541689 41541996 -140873246 - AluSx SINE Alu -14 298 1 28 29 0 0 chr6 41542053 41542088 -140873154 + AT_rich Low_complexity Low_complexity 1 35 0 255 31 0 0 chr6 41542470 41542502 -140872740 + (TTG)n Simple_repeat Simple_repeat 2 33 0 688 190 0 0 chr6 41542507 41542623 -140872619 - FLAM_A SINE Alu -17 116 1 255 300 30 20 chr6 41542870 41542970 -140872272 - LTR16C LTR ERVL -75 416 316 285 75 0 0 chr6 41544259 41544299 -140870943 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 411 266 66 2 chr6 41544537 41544650 -140870592 + MIR3 SINE MIR 53 172 -36 1760 165 7 10 chr6 41544785 41545082 -140870160 - AluSx SINE Alu -16 296 1 233 191 11 128 chr6 41545148 41545242 -140870000 - MER102a DNA MER1_type 0 330 248 2328 125 0 0 chr6 41545452 41545764 -140869478 - AluSx SINE Alu 0 312 1 1756 176 71 0 chr6 41545837 41546112 -140869130 - MER7A DNA MER2_type -2692 346 45 1629 173 7 11 chr6 41546112 41546384 -140868858 + AluJb SINE Alu 1 271 -41 1756 176 71 0 chr6 41546384 41546432 -140868810 - MER7A DNA MER2_type -2993 45 2 264 30 0 0 chr6 41546871 41546904 -140868338 + (TG)n Simple_repeat Simple_repeat 2 34 0 992 198 12 0 chr6 41546913 41547080 -140868162 - AluJo SINE Alu -139 173 5 271 270 40 14 chr6 41547530 41547604 -140867638 - L2 LINE L2 -9 3304 3229 667 269 79 36 chr6 41547679 41547984 -140867258 + L2 LINE L2 2804 3121 -192 360 0 0 0 chr6 41548314 41548354 -140866888 + (TG)n Simple_repeat Simple_repeat 2 41 0 365 281 83 0 chr6 41548905 41549026 -140866216 - MIR SINE MIR -50 212 82 297 75 0 0 chr6 41549548 41549588 -140865654 + (TG)n Simple_repeat Simple_repeat 2 41 0 243 355 122 41 chr6 41550039 41550236 -140865006 + L2 LINE L2 3006 3218 -54 1139 227 72 63 chr6 41550652 41551294 -140863948 - L2 LINE L2 -23 3290 2649 194 81 27 0 chr6 41551894 41551931 -140863311 + (CTTTA)n Simple_repeat Simple_repeat 3 40 0 210 71 0 0 chr6 41552506 41552534 -140862708 + (TC)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr6 41552688 41552710 -140862532 + AT_rich Low_complexity Low_complexity 1 22 0 575 282 31 71 chr6 41553091 41553346 -140861896 + MIR SINE MIR 14 258 -4 2341 97 0 0 chr6 41553857 41554156 -140861086 + AluSx SINE Alu 1 299 -13 585 187 154 0 chr6 41554669 41554792 -140860450 - FLAM_C SINE Alu -1 142 1 1519 153 46 23 chr6 41554897 41555158 -140860084 + AluJo SINE Alu 39 305 -7 2229 96 6 13 chr6 41555291 41555604 -140859638 + AluY SINE Alu 1 311 0 604 233 171 21 chr6 41555923 41556163 -140859079 - L1MC5 LINE L1 -79 7882 7607 22 70 0 0 chr6 41557093 41557136 -140858106 + AT_rich Low_complexity Low_complexity 1 43 0 2278 106 0 3 chr6 41557417 41557720 -140857522 - AluSc SINE Alu -7 302 1 1207 230 65 43 chr6 41557721 41557751 -140857491 - L1ME1 LINE L1 -115 6051 6023 2393 95 0 0 chr6 41557751 41558056 -140857186 + AluY SINE Alu 1 305 -6 1207 230 65 43 chr6 41558056 41558443 -140856799 - L1ME1 LINE L1 -143 6023 5625 859 260 57 0 chr6 41560887 41561114 -140854128 + MIR SINE MIR 2 241 -21 330 272 19 19 chr6 41561703 41561806 -140853436 - MER5B DNA MER1_type -1 177 75 305 200 0 17 chr6 41561955 41562015 -140853227 - MIR3 SINE MIR -39 169 111 1353 98 89 14 chr6 41562207 41562421 -140852821 + MER30 DNA MER1_type 1 230 0 400 197 8 86 chr6 41562525 41562642 -140852600 + MER3 DNA MER1_type 6 113 -96 5407 169 43 46 chr6 41562717 41562759 -140852483 - L1MB4 LINE L1 -7 6173 6132 2130 102 32 0 chr6 41562759 41563043 -140852199 - AluSx SINE Alu -19 293 1 5407 169 43 46 chr6 41563043 41565211 -140850031 - L1MB4 LINE L1 -48 6132 3979 2109 148 87 8 chr6 41565211 41565604 -140849638 - MSTB LTR MaLR -2 424 1 5407 169 43 46 chr6 41565604 41565642 -140849600 - L1MB4 LINE L1 -2201 3979 3942 23084 155 32 22 chr6 41565851 41571247 -140843995 + L1PA10 LINE L1 3 5671 -812 2372 91 0 0 chr6 41571247 41571544 -140843698 + AluY SINE Alu 1 297 -14 23084 155 32 22 chr6 41571544 41572364 -140842878 + L1PA10 LINE L1 5671 6482 -1 817 158 6 109 chr6 41573133 41573316 -140841926 - AluSg/x SINE Alu -15 297 134 1724 74 0 5 chr6 41573334 41573549 -140841693 - AluSg/x SINE Alu -14 296 83 210 118 0 0 chr6 41574641 41574675 -140840567 + (T)n Simple_repeat Simple_repeat 1 34 0 2609 55 0 7 chr6 41576244 41576553 -140838689 + AluY SINE Alu 1 307 -4 666 178 132 17 chr6 41577100 41577274 -140837968 - MER58A DNA MER1_type -2 222 29 589 259 149 31 chr6 41577476 41577765 -140837477 - L2 LINE L2 -9 3304 2982 221 143 0 104 chr6 41578683 41578760 -140836482 + (TTTTTG)n Simple_repeat Simple_repeat 3 71 0 232 286 0 0 chr6 41579015 41579071 -140836171 + (CGTG)n Simple_repeat Simple_repeat 2 57 0 352 265 41 10 chr6 41580020 41580118 -140835124 - MIR SINE MIR -68 140 40 867 215 6 0 chr6 41581199 41581357 -140833885 + FRAM SINE Alu 2 160 -6 1641 184 14 7 chr6 41583964 41584252 -140830990 + AluJo SINE Alu 1 290 -22 1790 128 9 94 chr6 41584296 41584616 -140830626 - AluJb SINE Alu -17 295 3 286 306 36 18 chr6 41584762 41584873 -140830369 - MIR SINE MIR -1 261 149 270 0 0 0 chr6 41586129 41586159 -140829083 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1541 190 25 15 chr6 41586168 41586442 -140828800 - AluJo SINE Alu -34 278 2 2352 109 0 0 chr6 41587190 41587493 -140827749 - AluY SINE Alu -8 303 1 759 268 0 12 chr6 41588053 41588217 -140827025 - FRAM SINE Alu -18 158 1 531 244 167 114 chr6 41588730 41589596 -140825646 + L1MC5 LINE L1 7145 8041 -1 693 196 7 20 chr6 41589899 41590052 -140825190 + L1PB4 LINE L1 6006 6156 0 258 32 0 0 chr6 41590076 41590107 -140825135 + (CA)n Simple_repeat Simple_repeat 2 32 0 296 260 136 19 chr6 41590686 41590840 -140824402 - MIR SINE MIR -71 191 20 225 180 0 0 chr6 41591374 41591424 -140823818 + (TG)n Simple_repeat Simple_repeat 2 51 0 1655 220 24 9 chr6 41593849 41594185 -140821057 + MER58B DNA MER1_type 1 341 0 2506 77 0 0 chr6 41594731 41595028 -140820214 + AluY SINE Alu 1 297 -14 1397 121 60 19 chr6 41595960 41596175 -140819067 + AluJo SINE Alu 86 309 -3 427 248 34 0 chr6 41596196 41596313 -140818929 + L1MC/D LINE L1 5689 5809 -1999 1266 161 9 40 chr6 41596810 41597033 -140818209 - MER20 DNA MER1_type 0 219 4 2445 80 0 3 chr6 41597141 41597441 -140817801 + AluSq SINE Alu 1 299 -14 1787 189 132 78 chr6 41598132 41598309 -140816933 - MER20B DNA MER1_type 0 783 617 1821 150 3 45 chr6 41598309 41598452 -140816790 + AluJb SINE Alu 1 148 -164 1859 112 51 61 chr6 41598452 41598764 -140816478 + AluSc SINE Alu 1 309 0 1821 150 3 45 chr6 41598764 41598934 -140816308 + AluJb SINE Alu 148 301 -11 1787 189 132 78 chr6 41598934 41599466 -140815776 - MER20B DNA MER1_type -166 617 35 218 160 20 20 chr6 41599561 41599611 -140815631 + CT-rich Low_complexity Low_complexity 4 53 0 24 32 0 0 chr6 41599806 41599837 -140815405 + AT_rich Low_complexity Low_complexity 1 31 0 304 283 69 44 chr6 41600160 41600319 -140814923 + L2 LINE L2 2917 3079 -193 227 180 213 16 chr6 41600500 41600561 -140814681 + MIR SINE MIR 174 246 -16 331 322 0 0 chr6 41600596 41600683 -140814559 + L2 LINE L2 3227 3313 0 363 245 153 0 chr6 41601082 41601180 -140814062 - L2 LINE L2 0 3313 3201 361 247 30 42 chr6 41602240 41602406 -140812836 + L1ME3 LINE L1 5666 5829 -333 968 165 21 21 chr6 41602438 41602632 -140812610 + MER20 DNA MER1_type 22 215 -4 971 219 18 25 chr6 41602815 41603056 -140812186 + MIR SINE MIR 5 241 -21 252 321 113 0 chr6 41603548 41603654 -140811588 + L2 LINE L2 3115 3232 -40 963 240 41 8 chr6 41604568 41604810 -140810432 + MIR SINE MIR 8 257 -5 360 273 0 40 chr6 41604812 41604911 -140810331 - MIR SINE MIR -70 138 44 529 243 97 40 chr6 41605308 41605534 -140809708 - L2 LINE L2 -40 3232 2994 279 173 0 0 chr6 41605899 41605951 -140809291 + GA-rich Low_complexity Low_complexity 4 55 0 405 254 87 22 chr6 41606394 41606532 -140808710 - L2 LINE L2 -5 3267 3121 211 204 0 20 chr6 41606837 41606886 -140808356 + G-rich Low_complexity Low_complexity 5 52 0 446 159 11 0 chr6 41606903 41606991 -140808251 + CT-rich Low_complexity Low_complexity 1 89 0 2299 108 0 0 chr6 41606991 41607287 -140807955 - AluSq SINE Alu -17 296 1 2354 66 42 0 chr6 41607448 41607734 -140807508 + AluSx SINE Alu 1 298 -14 543 224 161 6 chr6 41607897 41608071 -140807171 + L2 LINE L2 2966 3166 -147 1880 125 54 14 chr6 41608110 41608390 -140806852 - AluJb SINE Alu -21 291 1 623 278 79 17 chr6 41608609 41608818 -140806424 - MIR SINE MIR -25 237 17 559 245 14 22 chr6 41609275 41609414 -140805828 + MIR SINE MIR 17 154 -108 2782 188 41 7 chr6 41609431 41610012 -140805230 + MER90 LTR ERV1 12 612 -2 223 232 12 73 chr6 41610013 41610095 -140805147 + MIR SINE MIR 154 230 -32 536 239 43 14 chr6 41610098 41610236 -140805006 - MIR SINE MIR -108 154 13 1019 216 66 9 chr6 41611089 41611316 -140803926 + MIR SINE MIR 1 240 -22 2305 108 0 0 chr6 41611904 41612201 -140803041 + AluSx SINE Alu 1 297 -15 492 164 118 111 chr6 41612209 41612280 -140802962 + L1MC5 LINE L1 7613 7682 -279 1931 83 80 0 chr6 41612280 41612544 -140802698 + AluSg1 SINE Alu 1 285 -24 492 164 118 111 chr6 41612544 41612734 -140802508 + L1MC5 LINE L1 7682 7876 -85 491 170 206 43 chr6 41612752 41612893 -140802349 + MER5A DNA MER1_type 26 189 0 36 70 0 0 chr6 41613255 41613326 -140801916 + GC_rich Low_complexity Low_complexity 1 71 0 22 35 0 0 chr6 41613519 41613548 -140801694 + GC_rich Low_complexity Low_complexity 1 29 0 223 247 52 21 chr6 41613742 41613839 -140801403 - MIR3 SINE MIR -35 173 74 213 283 160 0 chr6 41614418 41614524 -140800718 - MIR SINE MIR -90 172 50 642 298 164 0 chr6 41614557 41614782 -140800460 - MIR SINE MIR 0 262 1 340 297 231 28 chr6 41616374 41616937 -140798305 - L2 LINE L2 -925 2389 1713 210 37 0 0 chr6 41617123 41617150 -140798092 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1412 216 17 17 chr6 41617208 41617504 -140797738 - AluJo SINE Alu -16 296 1 587 181 0 71 chr6 41617506 41617538 -140797704 - FLAM_C SINE Alu -177 135 102 2398 103 0 3 chr6 41617538 41617848 -140797394 + AluSx SINE Alu 1 309 -3 587 181 0 71 chr6 41617848 41617942 -140797300 - FLAM_C SINE Alu -210 102 18 25 0 0 0 chr6 41617951 41617976 -140797266 + AT_rich Low_complexity Low_complexity 1 25 0 689 214 50 22 chr6 41619099 41619281 -140795961 - MIR3 SINE MIR -7 201 15 1736 157 70 0 chr6 41619894 41620040 -140795202 + AluJo SINE Alu 1 135 -177 2513 73 0 0 chr6 41620040 41620341 -140794901 + AluY SINE Alu 1 301 -10 1736 157 70 0 chr6 41620341 41620481 -140794761 + AluJo SINE Alu 135 307 -5 2333 94 10 3 chr6 41620489 41620787 -140794455 + AluSx SINE Alu 5 304 -8 1447 219 142 19 chr6 41622487 41622903 -140792339 - MLT1C LTR MaLR 0 467 1 534 205 94 8 chr6 41623267 41623384 -140791858 - MER5A DNA MER1_type 0 189 63 415 214 6 138 chr6 41623291 41623450 -140791792 + MER5A DNA MER1_type 45 182 -7 * 213 267 139 0 chr6 41623493 41623579 -140791663 - MIR3 SINE MIR -1 207 110 1755 139 0 79 chr6 41623580 41623897 -140791345 - AluJb SINE Alu -10 302 11 1391 169 68 4 chr6 41623914 41624193 -140791049 + L1MC2 LINE L1 6028 6324 -20 2381 90 10 3 chr6 41624198 41624498 -140790744 + AluSx SINE Alu 1 302 -10 236 240 120 13 chr6 41624502 41624577 -140790665 - MIR SINE MIR -139 123 41 364 280 32 0 chr6 41624978 41625071 -140790171 - MER103 DNA DNA -69 97 2 1162 151 0 6 chr6 41626807 41626979 -140788263 - AluJb SINE Alu -11 301 131 1175 212 117 35 chr6 41626979 41627380 -140787862 - Charlie4a DNA MER1_type -69 439 6 2241 124 18 24 chr6 41627600 41627939 -140787303 - MER1B DNA MER1_type 0 337 1 194 114 0 29 chr6 41628027 41628062 -140787180 - MIR SINE MIR -66 142 109 1104 272 178 15 chr6 41628617 41629146 -140786096 + MLT1L LTR MaLR 1 615 0 1573 122 0 26 chr6 41629332 41629562 -140785680 - AluJo SINE Alu -4 308 85 328 239 248 0 chr6 41629699 41629816 -140785426 + MIR SINE MIR 117 262 0 244 314 0 14 chr6 41630935 41631005 -140784237 + MIR SINE MIR 17 85 -177 421 59 0 0 chr6 41631005 41631056 -140784186 - MLT2C2 LTR ERVL 0 464 414 232 155 56 14 chr6 41631069 41631140 -140784102 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 9523 42 4 1 chr6 41631144 41632210 -140783032 - MER11C LTR ERVK -2 1069 1 403 84 53 0 chr6 41632232 41632327 -140782915 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 2188 139 45 6 chr6 41632330 41632683 -140782559 - MLT2C2 LTR ERVL -56 408 42 193 333 50 10 chr6 41632708 41632807 -140782435 + MIR SINE MIR 88 190 -72 220 321 0 0 chr6 41633387 41633440 -140781802 + polypyrimidine Low_complexity Low_complexity 4 56 0 414 0 0 0 chr6 41633743 41633789 -140781453 + (CA)n Simple_repeat Simple_repeat 2 47 0 779 200 0 8 chr6 41633801 41633931 -140781311 + FLAM_A SINE Alu 4 132 -1 2982 154 17 84 chr6 41633955 41634087 -140781155 - L1MC3 LINE L1 -32 7753 7614 2265 101 3 0 chr6 41634087 41634384 -140780858 - AluSx SINE Alu -14 298 1 2982 154 17 84 chr6 41634384 41634855 -140780387 - L1MC3 LINE L1 -171 7614 7191 347 210 98 54 chr6 41634855 41634948 -140780294 - MLT1F1 LTR MaLR -379 170 35 280 175 145 9 chr6 41634948 41635061 -140780181 - L1MC3 LINE L1 -688 7097 6964 2258 123 45 31 chr6 41635079 41635438 -140779804 + THE1B LTR MaLR 1 364 0 498 171 0 45 chr6 41635451 41635539 -140779703 - AluSg/x SINE Alu -24 288 205 239 274 49 10 chr6 41635577 41635679 -140779563 - L1 LINE L1 -2616 3530 3425 1484 143 5 0 chr6 41635776 41635992 -140779250 - AluSq SINE Alu -96 217 1 2249 114 3 0 chr6 41636001 41636298 -140778944 - AluSx SINE Alu -14 298 1 273 315 126 0 chr6 41636699 41636826 -140778416 - MIR SINE MIR -14 248 106 541 324 53 0 chr6 41636847 41637072 -140778170 + L2 LINE L2 2042 2278 -1036 1934 264 121 52 chr6 41637116 41637763 -140777479 + L1ME LINE L1 6 607 -5475 2248 114 0 3 chr6 41637763 41638071 -140777171 + AluSc SINE Alu 1 307 -2 1934 264 121 52 chr6 41638071 41638760 -140776482 + L1ME LINE L1 607 1322 -4760 21 0 0 0 chr6 41638806 41638827 -140776415 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 41638897 41638919 -140776323 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr6 41639042 41639069 -140776173 + (TG)n Simple_repeat Simple_repeat 1 27 0 2870 101 5 16 chr6 41639138 41639515 -140775727 - THE1C LTR MaLR 0 375 3 207 186 0 0 chr6 41639774 41639817 -140775425 + (CATA)n Simple_repeat Simple_repeat 2 44 0 22 94 0 0 chr6 41639817 41639881 -140775361 + AT_rich Low_complexity Low_complexity 1 64 0 274 208 144 64 chr6 41639991 41640116 -140775126 - HAL1b LINE L1 -1013 335 201 450 138 15 0 chr6 41640142 41640207 -140775035 - MER2 DNA MER2_type -1 344 279 185 94 28 66 chr6 41640208 41640314 -140774928 + A-rich Low_complexity Low_complexity 4 105 0 545 80 11 23 chr6 41640340 41640428 -140774814 - MER2 DNA MER2_type -134 211 125 1171 195 15 5 chr6 41640429 41640634 -140774608 + AluJb SINE Alu 82 288 -24 785 194 0 0 chr6 41640654 41640778 -140774464 - MER2 DNA MER2_type -209 136 13 381 177 0 0 chr6 41640783 41640862 -140774380 + (CA)n Simple_repeat Simple_repeat 2 80 0 2151 170 19 4 chr6 41640862 41641443 -140773799 - L1MC/D LINE L1 -707 5637 5048 880 149 8 15 chr6 41641948 41642082 -140773160 - FLAM_C SINE Alu 0 133 1 1842 168 7 13 chr6 41642118 41642422 -140772820 - AluJb SINE Alu -10 302 1 475 84 0 0 chr6 41642612 41642683 -140772559 + Alu SINE Alu 242 312 0 2000 141 0 10 chr6 41642748 41643047 -140772195 - AluJb SINE Alu -16 296 1 2087 178 35 21 chr6 41643138 41643560 -140771682 - MLT1C LTR MaLR -1 466 39 1623 137 113 103 chr6 41644464 41644535 -140770707 + MER66A LTR ERV1 27 96 -382 1760 172 0 3 chr6 41644535 41644825 -140770417 + AluJb SINE Alu 1 289 -23 1623 137 113 103 chr6 41644825 41645161 -140770081 + MER66A LTR ERV1 96 438 -40 235 246 29 0 chr6 41645454 41645523 -140769719 - L1 LINE L1 -1706 4440 4370 1343 135 14 0 chr6 41645658 41645865 -140769377 + Tigger7 DNA MER2_type 271 480 -253 1561 149 21 43 chr6 41645872 41646154 -140769088 + AluJo SINE Alu 2 277 -35 2552 170 61 50 chr6 41646154 41646184 -140769058 - L1MB5 LINE L1 -32 6142 6114 2166 128 0 0 chr6 41646184 41646489 -140768753 + AluSx SINE Alu 1 305 -7 2552 170 61 50 chr6 41646489 41646775 -140768467 - L1MB5 LINE L1 -60 6114 5815 1990 152 3 3 chr6 41646775 41647077 -140768165 - AluJb SINE Alu -10 302 1 2552 170 61 50 chr6 41647077 41647319 -140767923 - L1MB5 LINE L1 -359 5815 5577 1697 142 0 4 chr6 41648299 41648546 -140766696 + AluJo SINE Alu 63 308 -4 6471 138 8 6 chr6 41648581 41650087 -140765155 + L1PB1 LINE L1 4640 6149 -2 220 305 30 73 chr6 41650605 41650838 -140764404 - L2 LINE L2 -208 3064 2842 1721 176 0 33 chr6 41651394 41651701 -140763541 - AluJo SINE Alu -15 297 1 1123 197 45 96 chr6 41652342 41652718 -140762524 + L1MD1 LINE L1 5885 6241 -1 * 1638 153 63 52 chr6 41652713 41653079 -140762163 + L1MB7 LINE L1 5813 6182 -2 1657 156 32 25 chr6 41653095 41653378 -140761864 + AluJo SINE Alu 3 287 -25 2289 197 50 24 chr6 41653387 41654046 -140761196 + L1ME1 LINE L1 5476 6184 0 284 275 96 44 chr6 41654073 41654324 -140760918 - HAL1 LINE L1 -1417 1090 827 519 302 46 22 chr6 41655078 41655427 -140759815 + ERVL LTR ERVL 3177 3557 -2207 774 290 40 57 chr6 41655438 41655810 -140759432 + ERVL LTR ERVL 4593 4958 -806 551 156 0 0 chr6 41655952 41656029 -140759213 - AluJb SINE Alu -26 286 210 273 338 37 23 chr6 41656173 41656342 -140758900 + ERVL LTR ERVL 5217 5390 -264 1925 112 58 0 chr6 41656461 41656738 -140758504 - AluSx SINE Alu -19 293 1 414 100 0 0 chr6 41656966 41657026 -140758216 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 595 293 42 0 chr6 41657106 41657412 -140757830 + L1MD1 LINE L1 2593 2910 -3734 1339 161 5 5 chr6 41657479 41657697 -140757545 - AluSg/x SINE Alu -10 302 85 419 239 101 0 chr6 41657730 41657889 -140757353 + L1MD1 LINE L1 3149 3323 -3321 2265 104 0 0 chr6 41657911 41658210 -140757032 + AluSx SINE Alu 13 311 -1 308 125 0 18 chr6 41658210 41658266 -140756976 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 3799 201 46 23 chr6 41658266 41659800 -140755442 + L1MD1 LINE L1 4974 6595 -145 6778 217 34 49 chr6 41659816 41659953 -140755289 + L1MDa LINE L1 14 151 -6483 306 0 0 0 chr6 41659953 41659987 -140755255 + (CA)n Simple_repeat Simple_repeat 1 34 0 6778 217 34 49 chr6 41659987 41660396 -140754846 + L1MDa LINE L1 151 564 -6070 2134 123 0 3 chr6 41660396 41660689 -140754553 - AluSx SINE Alu -20 292 1 6778 217 34 49 chr6 41660689 41661954 -140753288 + L1MDa LINE L1 564 1801 -4833 849 101 7 67 chr6 41661954 41662103 -140753139 + L1MD1 LINE L1 6084 6223 -19 472 285 43 70 chr6 41662105 41662402 -140752840 + L1MDa LINE L1 3359 3640 -3004 677 267 0 0 chr6 41662402 41662533 -140752709 + FLAM_A SINE Alu 1 131 -2 472 285 43 70 chr6 41662533 41662705 -140752537 + L1MDa LINE L1 3640 3815 -2829 1275 182 26 125 chr6 41662858 41663307 -140751935 + MLT1A1 LTR MaLR 4 365 0 843 233 67 137 chr6 41663308 41663670 -140751572 + L1MDa LINE L1 4041 4427 -2217 5072 167 20 59 chr6 41663670 41664568 -140750674 - MER21B LTR ERV1 0 863 1 843 233 67 137 chr6 41664568 41664772 -140750470 + L1MDa LINE L1 4427 4555 -2089 1752 137 0 4 chr6 41664772 41665027 -140750215 + AluJo SINE Alu 40 293 -19 843 233 67 137 chr6 41665027 41665133 -140750109 + L1MDa LINE L1 4555 4667 -1977 222 37 0 0 chr6 41665133 41665160 -140750082 + (GA)n Simple_repeat Simple_repeat 2 28 0 2903 209 24 20 chr6 41665174 41666363 -140748879 + L1M3e LINE L1 1692 2886 -4221 1332 116 21 47 chr6 41666364 41666522 -140748720 + L1MA7 LINE L1 5669 5830 -461 1269 177 155 26 chr6 41666522 41666787 -140748455 + AluJo SINE Alu 3 301 -1 1332 116 21 47 chr6 41666787 41666818 -140748424 + L1MA7 LINE L1 5830 5860 -431 2551 186 21 60 chr6 41666818 41667333 -140747909 + LTR42 LTR ERVL 1 495 0 1332 116 21 47 chr6 41667333 41667375 -140747867 + L1MA7 LINE L1 5860 5895 -396 292 244 153 29 chr6 41667354 41667377 -140747865 + L1MDa LINE L1 4636 4655 -1989 * 779 73 0 27 chr6 41667377 41667487 -140747755 + L1MA9 LINE L1 6206 6312 0 292 244 153 29 chr6 41667487 41667672 -140747570 + L1MDa LINE L1 4655 4870 -1774 2159 117 17 0 chr6 41667826 41668117 -140747125 - AluSx SINE Alu -16 296 1 1393 192 29 25 chr6 41668202 41668517 -140746725 - AluJo SINE Alu 0 316 1 1225 162 30 0 chr6 41668552 41668750 -140746492 - MER68 LTR ERV1 0 562 359 386 169 26 26 chr6 41668738 41668815 -140746427 - MER68 LTR ERV1 -418 144 68 * 1130 186 22 22 chr6 41668856 41669082 -140746160 - AluJo SINE Alu -82 230 5 2668 94 27 16 chr6 41669105 41669476 -140745766 + THE1C LTR MaLR 1 375 0 627 299 91 11 chr6 41669483 41669757 -140745485 - HAL1 LINE L1 -444 2063 1768 378 123 0 0 chr6 41669757 41669814 -140745428 - MSTA LTR MaLR 0 428 372 483 32 123 0 chr6 41669814 41670041 -140745201 + (TA)n Simple_repeat Simple_repeat 1 254 0 25 0 0 0 chr6 41670042 41670067 -140745175 + AT_rich Low_complexity Low_complexity 1 25 0 1885 120 99 12 chr6 41670074 41670408 -140744834 - MSTA LTR MaLR -64 364 2 1388 218 168 82 chr6 41670408 41671100 -140744142 - HAL1 LINE L1 -748 1759 1128 1757 166 14 3 chr6 41671100 41671390 -140743852 - AluJo SINE Alu -19 293 1 2088 129 0 3 chr6 41671396 41671698 -140743544 - AluSx SINE Alu -10 302 2 767 174 8 38 chr6 41671700 41671832 -140743410 - AluJo/FLAM SINE Alu -174 128 1 1388 218 168 82 chr6 41671832 41672036 -140743206 - HAL1 LINE L1 -1383 1124 775 419 338 153 0 chr6 41672189 41672346 -140742896 - MER5A DNA MER1_type 0 189 9 1619 192 24 0 chr6 41672358 41672649 -140742593 + AluJb SINE Alu 1 298 -14 346 304 14 47 chr6 41672891 41673039 -140742203 - HAL1 LINE L1 -1920 587 445 280 223 72 93 chr6 41673042 41673181 -140742061 - HAL1 LINE L1 -2364 143 8 225 260 67 63 chr6 41673245 41673468 -140741774 - L1MEc LINE L1 -4140 2256 2033 * 809 216 83 29 chr6 41673465 41673706 -140741536 - L1ME1 LINE L1 -5 6161 5908 193 286 16 32 chr6 41673817 41673880 -140741362 - MER5A DNA MER1_type 0 189 128 442 156 47 94 chr6 41674460 41674588 -140740654 + LTR54 LTR ERV1 62 183 -327 766 208 34 10 chr6 41674622 41674829 -140740413 + LTR54 LTR ERV1 299 510 0 250 286 26 58 chr6 41674839 41674993 -140740249 + L2 LINE L2 2934 3082 -190 230 214 257 0 chr6 41675692 41675762 -140739480 + MLT1K LTR MaLR 131 218 -370 * 380 310 63 13 chr6 41675761 41675919 -140739323 + MLT1K LTR MaLR 408 573 -15 2886 10 0 0 chr6 41676581 41676887 -140738355 + AluYa5 SINE Alu 1 306 -5 23 0 0 0 chr6 41678792 41678815 -140736427 + AT_rich Low_complexity Low_complexity 1 23 0 25 95 0 0 chr6 41679314 41679388 -140735854 + GC_rich Low_complexity Low_complexity 1 74 0 36 40 0 0 chr6 41679591 41679641 -140735601 + GC_rich Low_complexity Low_complexity 1 50 0 208 191 0 73 chr6 41679753 41679821 -140735421 + G-rich Low_complexity Low_complexity 5 67 0 337 259 181 0 chr6 41681122 41681238 -140734004 - MIR SINE MIR -111 151 15 304 217 212 35 chr6 41681274 41681417 -140733825 + MIR SINE MIR 22 188 -74 184 325 0 106 chr6 41681714 41681865 -140733377 + L3b LINE CR1 1445 1579 -4 2201 100 72 16 chr6 41681904 41682223 -140733019 + MER1B DNA MER1_type 1 337 0 1504 232 8 49 chr6 41682629 41683017 -140732225 - L2 LINE L2 -1 3312 2941 198 171 0 0 chr6 41684383 41684424 -140730818 + GA-rich Low_complexity Low_complexity 2 42 0 576 234 44 75 chr6 41684833 41685059 -140730183 - MER20 DNA MER1_type 0 219 1 300 222 0 139 chr6 41685390 41685498 -140729744 - MIR3 SINE MIR -13 195 103 296 231 0 15 chr6 41685508 41685573 -140729669 - L2 LINE L2 -1 3312 3249 939 220 83 6 chr6 41685976 41686199 -140729043 + MIR SINE MIR 23 259 -3 303 236 29 114 chr6 41686610 41686750 -140728492 + MIR SINE MIR 49 176 -86 533 170 20 10 chr6 41687939 41688039 -140727203 - MER91B DNA MER1_type -29 161 61 323 317 17 25 chr6 41690484 41690604 -140724638 - MER5B DNA MER1_type -59 119 1 1232 215 4 23 chr6 41690732 41690997 -140724245 + MIR SINE MIR 3 262 0 762 169 22 0 chr6 41691161 41691297 -140723945 + BC200 scRNA scRNA 2 140 -60 249 269 46 83 chr6 41691841 41691949 -140723293 + MIR SINE MIR 30 133 -75 318 198 62 0 chr6 41692004 41692085 -140723157 + MIR SINE MIR 126 211 -51 490 228 124 88 chr6 41692085 41692335 -140722907 + MIR SINE MIR 3 261 -1 229 261 69 69 chr6 41695391 41695478 -140719764 - MER5B DNA MER1_type -48 130 41 2845 10 0 0 chr6 41695478 41695781 -140719461 + AluYb8 SINE Alu 1 303 -15 229 261 69 69 chr6 41695781 41695823 -140719419 - MER5B DNA MER1_type -136 42 1 599 278 53 6 chr6 41696022 41696191 -140719051 - MER5B DNA MER1_type 0 178 2 1881 155 0 30 chr6 41696222 41696525 -140718717 + AluJo SINE Alu 5 298 -14 1122 252 182 14 chr6 41697473 41697897 -140717345 - L2 LINE L2 -1 3312 2818 2227 95 27 0 chr6 41697917 41698212 -140717030 - AluSx SINE Alu -5 307 5 509 285 98 21 chr6 41698855 41699048 -140716194 + MIR SINE MIR 11 218 -44 217 312 166 6 chr6 41699263 41699420 -140715822 - MIR SINE MIR -62 200 19 1676 177 17 13 chr6 41699563 41699862 -140715380 + AluJb SINE Alu 1 300 -12 2345 91 7 0 chr6 41701268 41701565 -140713677 - AluSx SINE Alu -13 299 1 186 313 30 30 chr6 41702606 41702673 -140712569 - L3b LINE CR1 -3 1580 1514 323 185 46 46 chr6 41702751 41702816 -140712426 - L2 LINE L2 -2 3311 3247 541 242 263 10 chr6 41703143 41703341 -140711901 - MIR SINE MIR -14 248 1 196 170 19 94 chr6 41703915 41703968 -140711274 - MER5B DNA MER1_type -20 158 110 2376 106 0 0 chr6 41704088 41704391 -140710851 - AluSc SINE Alu -6 303 1 664 305 134 19 chr6 41705451 41705772 -140709470 - L1MC4a LINE L1 -1895 5913 5556 519 285 83 57 chr6 41706363 41706892 -140708350 - L1ME4a LINE L1 -187 5934 5392 909 158 0 0 chr6 41706892 41707025 -140708217 + FLAM_C SINE Alu 7 139 -4 1894 147 61 18 chr6 41707583 41707910 -140707332 + MER58B DNA MER1_type 1 341 0 325 259 193 52 chr6 41708519 41708654 -140706588 - MIR SINE MIR -96 166 13 969 263 94 12 chr6 41708697 41709101 -140706141 - L1ME4a LINE L1 -202 5919 5531 574 249 40 45 chr6 41709224 41709401 -140705841 + MER5B DNA MER1_type 1 176 -2 243 261 0 0 chr6 41709881 41709946 -140705296 - L1ME4a LINE L1 -98 6023 5959 225 65 0 0 chr6 41710036 41710067 -140705175 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 205 343 15 0 chr6 41710407 41710474 -140704768 + L3 LINE CR1 317 384 -1193 221 300 20 70 chr6 41711092 41711192 -140704050 - L2 LINE L2 -20 3252 3158 567 261 151 35 chr6 41712027 41712430 -140702812 - LTR16A LTR ERVL 0 450 1 399 307 185 0 chr6 41712562 41712767 -140702475 - MIR SINE MIR -17 245 3 281 256 33 44 chr6 41712767 41712837 -140702405 + MER5B DNA MER1_type 34 102 -76 1826 119 98 0 chr6 41715713 41715990 -140699252 - AluJo SINE Alu -8 304 1 279 295 116 39 chr6 41716310 41716439 -140698803 - MIR3 SINE MIR -21 187 49 204 375 97 40 chr6 41716773 41717021 -140698221 - L2 LINE L2 -16 3256 2995 240 347 62 14 chr6 41717519 41717663 -140697579 - L2 LINE L2 -931 2383 2233 204 246 218 9 chr6 41717834 41717944 -140697298 - MIR3 SINE MIR -61 147 15 4210 155 37 38 chr6 41718583 41719369 -140695873 + LTR1 LTR ERV1 1 785 0 234 0 0 0 chr6 41719449 41719475 -140695767 + (TG)n Simple_repeat Simple_repeat 2 27 0 341 279 123 32 chr6 41719909 41720063 -140695179 - L1ME4a LINE L1 -10 6111 5944 2382 235 49 15 chr6 41720577 41721215 -140694027 - L1ME3 LINE L1 0 6162 5521 2347 101 141 5 chr6 41721215 41721592 -140693650 - MSTA LTR MaLR 0 428 1 2382 235 49 15 chr6 41721592 41721638 -140693604 - L1ME3 LINE L1 -641 5521 5478 2027 139 0 25 chr6 41722060 41722377 -140692865 - AluJb SINE Alu -3 309 1 194 128 26 0 chr6 41723157 41723196 -140692046 + CT-rich Low_complexity Low_complexity 5 44 0 25 0 0 0 chr6 41723396 41723421 -140691821 + AT_rich Low_complexity Low_complexity 1 25 0 202 206 65 19 chr6 41723642 41723749 -140691493 + (TATAA)n Simple_repeat Simple_repeat 1 112 0 607 286 33 86 chr6 41723772 41723958 -140691284 - L1ME4a LINE L1 -268 5902 5708 1879 135 3 61 chr6 41723958 41724269 -140690973 - AluJb SINE Alu -19 293 1 607 286 33 86 chr6 41724269 41724603 -140690639 - L1ME4a LINE L1 -462 5708 5410 493 287 48 24 chr6 41724602 41724811 -140690431 - L1MC4a LINE L1 -1913 5895 5682 * 1757 135 30 4 chr6 41725112 41725528 -140689714 - AluJo SINE Alu 0 461 39 279 0 0 0 chr6 41725680 41725711 -140689531 + (CA)n Simple_repeat Simple_repeat 2 32 0 281 316 72 36 chr6 41725746 41725885 -140689357 + MIR SINE MIR 55 198 -64 190 206 192 41 chr6 41726303 41726376 -140688866 + MER5A DNA MER1_type 105 188 -1 518 234 80 64 chr6 41726713 41726901 -140688341 - MIR SINE MIR -48 214 24 189 147 0 0 chr6 41726922 41726956 -140688286 + (TCC)n Simple_repeat Simple_repeat 3 36 0 271 228 7 116 chr6 41727130 41727302 -140687940 - L1MC4a LINE L1 -1855 5953 5801 4530 130 28 23 chr6 41727598 41728344 -140686898 - LTR39 LTR ERV1 -10 773 24 265 258 32 65 chr6 41728508 41728601 -140686641 - MIR SINE MIR -63 199 110 237 348 87 7 chr6 41728846 41728984 -140686258 - MIR SINE MIR -5 257 109 1326 176 29 21 chr6 41729012 41729250 -140685992 - AluJb SINE Alu -14 298 59 608 156 0 0 chr6 41779252 41779348 -140635894 - FRAM SINE Alu -14 162 67 544 268 26 23 chr6 41779424 41779596 -140635646 + MLT1I LTR MaLR 39 212 -197 241 214 22 112 chr6 41779629 41779692 -140635550 + MLT1I LTR MaLR 329 383 -26 1841 130 10 38 chr6 41779692 41779985 -140635257 + AluJo SINE Alu 12 296 -16 241 214 22 112 chr6 41779985 41780010 -140635232 + MLT1I LTR MaLR 383 409 0 245 200 0 0 chr6 41780208 41780253 -140634989 + LTR67 LTR ERVL 113 157 -400 234 241 0 17 chr6 41780209 41780267 -140634975 + MLT1J1 LTR MaLR 71 127 -319 * 256 265 0 0 chr6 41780327 41780395 -140634847 + MLT1L LTR MaLR 548 615 0 2046 124 7 3 chr6 41780925 41781224 -140634018 + AluSx SINE Alu 1 300 -12 259 271 116 34 chr6 41781254 41781461 -140633781 - L1ME LINE L1 -281 5840 5617 1867 158 10 10 chr6 41781513 41781805 -140633437 - AluJo SINE Alu -20 292 1 1948 154 3 3 chr6 41782329 41782627 -140632615 + AluJo SINE Alu 11 308 -4 222 317 69 41 chr6 41783031 41783126 -140632116 + MIR SINE MIR 59 161 -101 2130 95 0 44 chr6 41783126 41783249 -140631993 + AluSq SINE Alu 16 143 -170 2421 84 0 0 chr6 41783249 41783558 -140631684 + AluSp SINE Alu 1 309 0 2130 95 0 44 chr6 41783558 41783728 -140631514 + AluSq SINE Alu 143 297 -16 222 317 69 41 chr6 41783728 41783777 -140631465 + MIR SINE MIR 161 207 -55 304 237 247 0 chr6 41783871 41783964 -140631278 - MER5A DNA MER1_type -1 188 73 873 147 8 0 chr6 41784236 41784365 -140630877 + FLAM_C SINE Alu 2 131 -2 2284 115 0 0 chr6 41784476 41784772 -140630470 - AluSc SINE Alu -13 296 1 1439 197 45 4 chr6 41784801 41785199 -140630043 - LTR48 LTR ERV1 -43 744 135 299 274 170 0 chr6 41785177 41785283 -140629959 - MER39 LTR ERV1 -583 124 1 * 518 287 84 31 chr6 41785302 41785563 -140629679 - MLT1L LTR MaLR -28 587 313 1206 241 15 32 chr6 41785583 41785990 -140629252 - L1ME LINE L1 -5176 894 495 875 166 0 0 chr6 41786012 41786151 -140629091 - FLAM_C SINE Alu -4 139 1 1258 234 98 39 chr6 41786151 41786609 -140628633 - L1ME LINE L1 -5580 490 6 274 253 42 11 chr6 41786623 41786718 -140628524 - MLT1L LTR MaLR -326 289 192 225 269 0 43 chr6 41786835 41786928 -140628314 + MER103 DNA DNA 66 154 -12 2331 106 35 0 chr6 41787667 41788015 -140627227 + L1PA16 LINE L1 5798 6157 -9 1925 146 14 0 chr6 41788050 41788345 -140626897 + AluJo SINE Alu 14 312 0 338 191 48 38 chr6 41788667 41788772 -140626470 - L1MC4a LINE L1 -1863 5945 5840 355 249 56 58 chr6 41788801 41788847 -140626395 - L1ME4a LINE L1 -238 5883 5838 1711 146 0 55 chr6 41788847 41789155 -140626087 - AluJb SINE Alu -21 291 1 355 249 56 58 chr6 41789155 41789322 -140625920 - L1ME4a LINE L1 -283 5838 5673 505 257 59 35 chr6 41789677 41789868 -140625374 - MIR SINE MIR 0 262 23 737 281 87 34 chr6 41790667 41791048 -140624194 - L1MC4a LINE L1 -1845 5963 5563 342 304 59 50 chr6 41791329 41791651 -140623591 + L1MC/D LINE L1 5276 5600 -562 1483 225 96 56 chr6 41791659 41792193 -140623049 + MER74B LTR ERVL 50 604 -18 385 287 11 0 chr6 41792227 41792399 -140622843 + L1MC/D LINE L1 5654 5828 -334 2091 142 0 0 chr6 41793085 41793380 -140621862 + AluSq SINE Alu 1 295 -18 1268 236 82 84 chr6 41793845 41794383 -140620859 + MLT1F LTR MaLR 6 542 0 328 289 21 80 chr6 41794403 41794590 -140620652 - MLT1L LTR MaLR -221 394 219 332 242 118 6 chr6 41794735 41794902 -140620340 - L1MC5 LINE L1 -389 7419 7268 470 277 84 19 chr6 41796304 41796459 -140618783 - MIR SINE MIR -44 218 54 195 222 0 0 chr6 41796976 41797021 -140618221 + (CA)n Simple_repeat Simple_repeat 1 45 0 798 283 129 27 chr6 41799409 41799741 -140615501 - L2 LINE L2 -3 3310 2945 544 301 34 39 chr6 41799887 41800018 -140615224 + MIR SINE MIR 47 178 -84 3635 104 41 6 chr6 41800018 41800527 -140614715 - MER1A DNA MER1_type 0 527 1 544 301 34 39 chr6 41800527 41800601 -140614641 + MIR SINE MIR 178 251 -11 255 318 47 0 chr6 41800659 41800766 -140614476 - L2 LINE L2 -728 2586 2475 1792 124 56 8 chr6 41800999 41801312 -140613930 + AluSg SINE Alu 1 326 0 748 196 0 15 chr6 41801639 41801772 -140613470 + FLAM_C SINE Alu 3 133 0 949 244 45 5 chr6 41802106 41802327 -140612915 - MIR SINE MIR -21 241 12 371 280 37 0 chr6 41802371 41802478 -140612764 - L2 LINE L2 -257 3056 2946 565 267 93 39 chr6 41802621 41803102 -140612140 - L1ME LINE L1 -544 5618 5084 1843 161 0 7 chr6 41803102 41803407 -140611835 - AluJo SINE Alu 0 303 1 565 267 93 39 chr6 41803407 41803578 -140611664 - L1ME LINE L1 -1078 5084 4924 2262 95 0 0 chr6 41803975 41804285 -140610957 - AluSx SINE Alu 0 310 1 444 86 0 0 chr6 41804755 41804825 -140610417 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 1104 244 55 4 chr6 41805253 41805524 -140609718 - MLT1J LTR MaLR -226 285 1 1846 181 0 0 chr6 41805608 41805907 -140609335 + AluJo SINE Alu 1 299 -13 272 299 0 0 chr6 41806454 41806521 -140608721 - MIR3 SINE MIR -43 165 99 630 299 147 14 chr6 41806838 41807186 -140608056 - L2 LINE L2 -52 3261 2868 195 303 59 34 chr6 41807603 41807722 -140607520 + MIR3 SINE MIR 33 154 -54 235 250 0 0 chr6 41807774 41807830 -140607412 + L2 LINE L2 3255 3310 -3 2348 101 0 0 chr6 41807952 41808249 -140606993 + AluSc SINE Alu 1 297 -12 346 299 13 45 chr6 41808297 41808451 -140606791 - L1MEd LINE L1 -5422 697 549 265 285 118 27 chr6 41808691 41808807 -140606435 - L1MEd LINE L1 -5914 205 64 1858 175 0 10 chr6 41808807 41809116 -140606126 - AluJo SINE Alu -3 309 4 265 285 118 27 chr6 41809116 41809185 -140606057 - L1MEd LINE L1 -6055 64 3 202 200 0 0 chr6 41809238 41809278 -140605964 + (TG)n Simple_repeat Simple_repeat 2 41 0 751 294 30 0 chr6 41809434 41809631 -140605611 - MIR SINE MIR -3 259 57 2186 102 0 11 chr6 41809764 41810047 -140605195 + AluSq SINE Alu 1 280 -33 1039 114 0 16 chr6 41810047 41810302 -140604940 + (GAAA)n Simple_repeat Simple_repeat 1 250 0 2260 102 3 0 chr6 41810724 41811009 -140604233 - AluSg SINE Alu -24 286 1 1419 160 16 0 chr6 41811036 41811292 -140603950 - L1MD3 LINE L1 -6 7989 7730 838 158 15 15 chr6 41811542 41811675 -140603567 + FLAM_A SINE Alu 1 133 0 687 54 0 0 chr6 41812539 41812631 -140602611 + (TCCA)n Simple_repeat Simple_repeat 2 93 0 426 319 0 0 chr6 41813679 41813773 -140601469 - L2 LINE L2 -17 3255 3162 517 313 133 0 chr6 41814112 41814323 -140600919 - MIR SINE MIR -4 258 20 1258 164 15 0 chr6 41814362 41814563 -140600679 + AluJo SINE Alu 1 204 -108 288 71 0 0 chr6 41814564 41814606 -140600636 + FLAM_A SINE Alu 86 127 -6 1916 146 0 32 chr6 41814703 41815011 -140600231 - AluJo SINE Alu -13 299 2 212 158 18 0 chr6 41815697 41815754 -140599488 + GA-rich Low_complexity Low_complexity 1 58 0 360 0 0 0 chr6 41815782 41815822 -140599420 + (CA)n Simple_repeat Simple_repeat 2 41 0 559 34 47 113 chr6 41816131 41816358 -140598884 + L1ME4a LINE L1 5593 5778 -343 1551 181 34 34 chr6 41816358 41816470 -140598772 + AluJo SINE Alu 1 112 -200 2828 13 0 19 chr6 41816470 41816784 -140598458 - AluYb8 SINE Alu -10 308 1 1551 181 34 34 chr6 41816784 41816963 -140598279 + AluJo SINE Alu 111 292 -20 559 34 47 113 chr6 41816963 41817084 -140598158 + L1ME4a LINE L1 5778 5905 -216 346 247 0 0 chr6 41817747 41817820 -140597422 + MIR SINE MIR 71 143 -119 341 252 3 0 chr6 41817902 41817985 -140597257 + MIR SINE MIR 57 140 -68 568 260 87 25 chr6 41818038 41818234 -140597008 - L3 LINE CR1 -3 1574 1367 698 251 26 36 chr6 41818400 41818595 -140596647 + MIR SINE MIR 7 199 -63 185 343 130 20 chr6 41819093 41819239 -140596003 + MIR3 SINE MIR 39 200 -8 244 340 68 12 chr6 41820800 41820962 -140594280 - MIR3 SINE MIR -6 202 32 389 291 155 0 chr6 41821516 41821664 -140593578 - MER5A DNA MER1_type -10 179 9 180 276 0 69 chr6 41821668 41821726 -140593516 - MIR3 SINE MIR -44 164 111 339 340 10 0 chr6 41822554 41822657 -140592585 + MIR SINE MIR 47 150 -112 1155 161 0 33 chr6 41822719 41822930 -140592312 + MER58C DNA MER1_type 1 204 -11 467 232 179 13 chr6 41822939 41823090 -140592152 - MIR SINE MIR -67 195 20 1405 190 137 4 chr6 41824055 41824318 -140590924 + AluJb SINE Alu 1 298 -4 297 318 106 6 chr6 41824384 41824563 -140590679 - L1ME4a LINE L1 -241 5880 5684 407 205 66 114 chr6 41824723 41824889 -140590353 + MIR3 SINE MIR 3 160 -48 * 580 247 126 11 chr6 41824879 41825053 -140590189 + MIR SINE MIR 50 243 -19 216 0 0 0 chr6 41825892 41825916 -140589326 + (CA)n Simple_repeat Simple_repeat 2 25 0 1726 171 55 102 chr6 41825919 41826427 -140588815 - L1ME1 LINE L1 -88 6078 5595 3129 187 92 41 chr6 41826442 41826768 -140588474 - L1MB2 LINE L1 -3 6168 5860 2281 98 0 3 chr6 41826768 41827063 -140588179 - AluSc SINE Alu -15 294 1 3129 187 92 41 chr6 41827063 41827350 -140587892 - L1MB2 LINE L1 -311 5860 5589 2642 65 0 0 chr6 41827350 41827660 -140587582 - AluY SINE Alu -1 310 1 3129 187 92 41 chr6 41827660 41827856 -140587386 - L1MB2 LINE L1 -582 5589 5316 2766 151 105 129 chr6 41827867 41828205 -140587037 - L1MC3 LINE L1 -8 7777 7432 354 23 0 0 chr6 41828205 41828248 -140586994 + (GA)n Simple_repeat Simple_repeat 1 43 0 2112 72 0 0 chr6 41828248 41828498 -140586744 - AluY SINE Alu -39 272 23 2766 151 105 129 chr6 41828498 41828792 -140586450 - L1MC3 LINE L1 -352 7433 7102 266 299 0 0 chr6 41828792 41828859 -140586383 - MLT1F1 LTR MaLR -456 111 45 2766 151 105 129 chr6 41828859 41829063 -140586179 - L1MC3 LINE L1 -683 7102 6895 645 204 0 0 chr6 41829160 41829263 -140585979 - AluJb SINE Alu -25 287 185 307 273 162 56 chr6 41829279 41829756 -140585486 + L2 LINE L2 2683 3204 -68 853 185 33 5 chr6 41830694 41830878 -140584364 + MER5A DNA MER1_type 1 189 0 587 226 241 34 chr6 41830917 41831129 -140584113 + MER5C DNA MER1_type 3 282 -42 2410 79 3 0 chr6 41831129 41831419 -140583823 - AluY SINE Alu -20 291 1 587 226 241 34 chr6 41831419 41831471 -140583771 + MER5C DNA MER1_type 282 322 -2 2131 135 0 0 chr6 41831576 41831864 -140583378 + AluSq SINE Alu 1 288 -25 2027 114 0 4 chr6 41832406 41832678 -140582564 + AluSx SINE Alu 37 307 -5 549 229 181 21 chr6 41832859 41833047 -140582195 + MER20 DNA MER1_type 2 219 0 1124 108 142 15 chr6 41833125 41833329 -140581913 - MER30 DNA MER1_type 0 230 1 1611 185 50 3 chr6 41833783 41834081 -140581161 - AluSx SINE Alu 0 312 1 244 210 116 127 chr6 41834995 41835176 -140580066 + LTR33 LTR ERVL 87 265 -256 189 211 18 70 chr6 41835459 41835516 -140579726 + MER5B DNA MER1_type 123 176 -2 413 330 98 9 chr6 41835857 41836072 -140579170 + MIR SINE MIR 28 261 -1 2247 126 0 0 chr6 41836121 41836423 -140578819 + AluSq SINE Alu 1 302 -11 254 276 11 35 chr6 41836532 41836619 -140578623 - L2 LINE L2 -1 3312 3228 590 168 0 0 chr6 41836875 41836976 -140578266 + FLAM_A SINE Alu 1 101 -41 298 180 9 90 chr6 41838093 41838204 -140577038 - MLT1I LTR MaLR 0 409 308 483 209 0 0 chr6 41838640 41838731 -140576511 - MIR SINE MIR -143 119 29 686 169 52 0 chr6 41839085 41839221 -140576021 + MER5A DNA MER1_type 47 189 0 229 226 214 88 chr6 41839236 41839395 -140575847 - L2 LINE L2 -182 3090 2912 269 324 54 9 chr6 41839660 41839771 -140575471 - MIR3 SINE MIR -90 118 3 380 245 41 10 chr6 41840020 41840118 -140575124 - MER91B DNA MER1_type 0 190 90 252 217 54 139 chr6 41840135 41840264 -140574978 - MER91B DNA MER1_type -60 130 13 806 133 139 0 chr6 41842044 41842210 -140573032 - MER53 DNA DNA 0 189 1 423 232 45 9 chr6 41842727 41842839 -140572403 + L2 LINE L2 3197 3312 -1 388 273 9 2 chr6 41842864 41843010 -140572232 + MIR SINE MIR 20 165 -62 1670 49 5 13 chr6 41843155 41843379 -140571863 - L1PA3 LINE L1 0 6155 5934 279 240 80 20 chr6 41843511 41843611 -140571631 - MIR SINE MIR -73 135 30 689 226 11 55 chr6 41844415 41844596 -140570646 - MER91B DNA MER1_type -15 175 3 209 291 29 58 chr6 41845063 41845166 -140570076 - MIR SINE MIR -84 124 25 252 0 0 0 chr6 41845833 41845861 -140569381 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 313 307 102 7 chr6 41846109 41846246 -140568996 - MARNA DNA Mariner -345 241 92 1886 141 0 49 chr6 41846452 41846758 -140568484 + AluJb SINE Alu 1 291 -21 227 222 19 0 chr6 41847213 41847267 -140567975 - L2 LINE L2 -251 3062 3008 952 276 157 11 chr6 41848200 41848570 -140566672 - LTR16C LTR ERVL -10 481 58 381 243 99 9 chr6 41849022 41849133 -140566109 - MIR SINE MIR -59 149 44 1263 95 0 12 chr6 41849741 41849910 -140565332 - AluSg/x SINE Alu -19 293 127 455 254 97 0 chr6 41849929 41850043 -140565199 - MER63 DNA MER1_type -311 751 1 415 255 38 0 chr6 41850761 41850867 -140564375 + MIR SINE MIR 99 208 -54 182 224 0 41 chr6 41850976 41851025 -140564217 + MER5A DNA MER1_type 122 168 -21 2249 122 0 0 chr6 41851746 41852042 -140563200 + AluSx SINE Alu 3 298 -14 657 0 0 0 chr6 41852602 41852675 -140562567 + (TA)n Simple_repeat Simple_repeat 2 74 0 513 239 37 0 chr6 41852880 41853014 -140562228 - MIR SINE MIR -77 185 47 409 328 52 0 chr6 41853925 41854059 -140561183 + MIR SINE MIR 54 194 -68 256 211 254 35 chr6 41854118 41854232 -140561010 - MIR3 SINE MIR -63 145 7 348 236 18 73 chr6 41855419 41855529 -140559713 + MIR SINE MIR 79 182 -80 374 227 191 0 chr6 41856115 41856256 -140558986 + L1MC4 LINE L1 7786 7953 -89 23 33 0 0 chr6 41856336 41856366 -140558876 + AT_rich Low_complexity Low_complexity 1 30 0 287 267 104 52 chr6 41857078 41857213 -140558029 - MIR3 SINE MIR -22 186 45 310 296 17 26 chr6 41857380 41857495 -140557747 - MIR SINE MIR -90 172 59 2073 121 17 3 chr6 41857555 41857853 -140557389 + AluSx SINE Alu 1 302 -10 519 174 16 8 chr6 41857866 41857987 -140557255 + GA-rich Low_complexity Low_complexity 4 125 0 2344 89 0 0 chr6 41858748 41859090 -140556152 - AluSx SINE Alu 0 342 1 228 299 104 0 chr6 41859249 41859326 -140555916 - MIR SINE MIR -110 152 68 705 247 31 0 chr6 41859326 41859488 -140555754 + MLT1D LTR MaLR 339 505 0 217 326 21 0 chr6 41859488 41859583 -140555659 + MIR SINE MIR 46 142 -120 364 238 12 0 chr6 41859630 41859710 -140555532 + L2 LINE L2 2402 2482 -832 22 0 0 0 chr6 41859710 41859732 -140555510 + AT_rich Low_complexity Low_complexity 1 22 0 708 135 0 9 chr6 41859737 41859848 -140555394 - FLAM_C SINE Alu -25 118 9 707 272 206 22 chr6 41859852 41860572 -140554670 + L2 LINE L2 2468 3313 0 321 294 47 0 chr6 41861561 41861646 -140553596 - L2 LINE L2 -16 3256 3168 261 302 47 0 chr6 41863774 41863880 -140551362 - MIR3 SINE MIR -83 125 15 365 269 68 8 chr6 41864366 41864492 -140550750 - MIR SINE MIR -62 146 32 2536 96 0 0 chr6 41865557 41865869 -140549373 + AluSx SINE Alu 1 312 0 196 333 171 0 chr6 41865973 41866090 -140549152 + MIR SINE MIR 71 207 -55 738 127 6 30 chr6 41866091 41866100 -140549142 + (GGAA)n Simple_repeat Simple_repeat 3 11 -153 2178 152 0 3 chr6 41866100 41866410 -140548832 + AluJo SINE Alu 1 309 -3 738 127 6 30 chr6 41866410 41866566 -140548676 + (GGAA)n Simple_repeat Simple_repeat 11 164 0 197 91 30 0 chr6 41866603 41866636 -140548606 + MIR SINE MIR 215 248 -14 181 283 33 0 chr6 41866675 41866735 -140548507 - L2 LINE L2 -1 3271 3210 268 137 59 0 chr6 41866975 41867026 -140548216 + L1MB3 LINE L1 5994 6047 -136 589 153 23 30 chr6 41867116 41867247 -140547995 + L1MB3 LINE L1 6054 6183 0 630 236 29 6 chr6 41867502 41867676 -140547566 - MER45A DNA AcHobo 0 178 1 696 223 125 2 chr6 41867751 41868022 -140547220 - L1ME3A LINE L1 -1 6169 5838 1217 243 12 31 chr6 41868033 41868358 -140546884 + L1ME LINE L1 5480 5798 -372 201 264 102 3 chr6 41869263 41869336 -140545906 - MIR SINE MIR -64 144 90 2141 108 34 3 chr6 41869336 41869631 -140545611 + AluSx SINE Alu 1 304 -8 201 264 102 3 chr6 41869631 41869659 -140545583 - MIR SINE MIR -118 90 66 639 233 0 0 chr6 41869676 41869809 -140545433 + FLAM_A SINE Alu 1 133 0 299 327 39 0 chr6 41869844 41869948 -140545294 + MIR SINE MIR 112 219 -43 1061 153 77 29 chr6 41870206 41870415 -140544827 - MER20 DNA MER1_type 0 219 1 357 295 72 30 chr6 41870415 41870752 -140544490 - MLT1L LTR MaLR -54 561 168 212 320 128 16 chr6 41870839 41870964 -140544278 + L2 LINE L2 3121 3259 -13 189 0 0 0 chr6 41870964 41870985 -140544257 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 421 273 45 87 chr6 41871131 41871373 -140543869 + L2 LINE L2 2896 3127 -145 1631 176 20 10 chr6 41871469 41871771 -140543471 - MER58B DNA MER1_type 0 341 37 2182 130 0 3 chr6 41871987 41872287 -140542955 + AluSx SINE Alu 1 299 -13 1625 65 23 0 chr6 41872484 41872701 -140542541 + MLT2A1 LTR ERVL 223 444 0 1960 118 29 11 chr6 41872789 41873107 -140542135 - AluSg SINE Alu 0 327 5 402 272 25 54 chr6 41873139 41873320 -140541922 + L1ME LINE L1 5497 5669 -501 2117 96 26 61 chr6 41873320 41873632 -140541610 + AluSx SINE Alu 1 301 -11 2682 159 6 26 chr6 41874127 41874618 -140540624 + MER66B LTR ERV1 6 486 0 1172 242 65 45 chr6 41874795 41875253 -140539989 + MLT1C LTR MaLR 3 467 0 1566 130 74 46 chr6 41876173 41876313 -140538929 - AluJb SINE Alu -20 292 157 2272 92 3 7 chr6 41876313 41876608 -140538634 - AluSc SINE Alu -15 294 1 1566 130 74 46 chr6 41876608 41876751 -140538491 - AluJb SINE Alu -155 157 1 577 344 105 10 chr6 41877501 41877902 -140537340 - L1MC4a LINE L1 -1959 5849 5411 246 128 0 0 chr6 41877903 41877942 -140537300 + (TC)n Simple_repeat Simple_repeat 1 39 0 956 131 0 0 chr6 41877942 41878079 -140537163 - FLAM_C SINE Alu 0 143 7 488 318 88 12 chr6 41879766 41879936 -140535306 - MIR SINE MIR -75 187 5 4441 179 44 27 chr6 41880032 41880088 -140535154 - L1MB7 LINE L1 0 6184 6130 1857 143 4 4 chr6 41880088 41880361 -140534881 - AluSx SINE Alu -39 273 1 4441 179 44 27 chr6 41880361 41881040 -140534202 - L1MB7 LINE L1 -54 6130 5464 3630 137 16 0 chr6 41881040 41881588 -140533654 - MER41D LTR ERV1 0 557 1 4441 179 44 27 chr6 41881588 41881653 -140533589 - L1MB7 LINE L1 -720 5464 5402 2386 103 8 48 chr6 41881653 41882032 -140533210 + THE1B LTR MaLR 1 364 0 4441 179 44 27 chr6 41882032 41883412 -140531830 - L1MB7 LINE L1 -782 5402 3847 2110 104 0 66 chr6 41883422 41883739 -140531503 - AluSx SINE Alu -16 296 1 814 157 0 127 chr6 41884179 41884376 -140530866 + FRAM SINE Alu 1 172 -4 388 282 136 23 chr6 41884610 41884830 -140530412 - MLT1K LTR MaLR -324 264 20 715 238 142 11 chr6 41885218 41885500 -140529742 - LTR33 LTR ERVL -169 352 34 598 280 127 26 chr6 41885560 41885621 -140529621 + MLT1J1 LTR MaLR 109 162 -284 2232 135 0 3 chr6 41885621 41885933 -140529309 + AluSx SINE Alu 1 311 -1 598 280 127 26 chr6 41885933 41886178 -140529064 + MLT1J1 LTR MaLR 162 446 0 2475 102 0 0 chr6 41887195 41887508 -140527734 + AluSp SINE Alu 1 313 0 389 244 321 6 chr6 41887618 41887786 -140527456 + L2 LINE L2 3093 3313 0 204 286 0 0 chr6 41887844 41887893 -140527349 - MIR SINE MIR -61 147 99 2407 69 14 0 chr6 41887926 41888217 -140527025 - AluSc SINE Alu -14 295 1 350 145 32 0 chr6 41888523 41888585 -140526657 + L3 LINE CR1 1424 1487 -90 1948 103 48 38 chr6 41889907 41890043 -140525199 + AluSq SINE Alu 1 134 -179 2427 67 0 13 chr6 41890043 41890341 -140524901 + AluY SINE Alu 1 294 -17 1948 103 48 38 chr6 41890341 41890494 -140524748 + AluSq SINE Alu 134 293 -20 260 298 0 0 chr6 41890579 41890636 -140524606 + L2 LINE L2 3207 3263 -9 371 242 53 0 chr6 41891030 41891125 -140524117 + MIR3 SINE MIR 81 180 -28 7185 135 95 72 chr6 41891164 41892824 -140522418 - pTR5 LTR ERV1 0 2438 741 457 240 3 37 chr6 41893419 41893579 -140521663 - MIR SINE MIR -49 213 60 288 247 0 27 chr6 41893842 41893915 -140521327 + MIR SINE MIR 181 251 -11 2160 113 7 7 chr6 41893916 41894218 -140521024 + AluSx SINE Alu 1 302 -10 222 105 0 26 chr6 41894302 41894340 -140520902 - MIR SINE MIR -118 144 108 2179 129 0 0 chr6 41895187 41895482 -140519760 + AluSx SINE Alu 1 295 -17 293 47 23 0 chr6 41895482 41895525 -140519717 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 661 260 62 31 chr6 41895786 41895978 -140519264 + MIR SINE MIR 53 250 -12 678 232 77 53 chr6 41896083 41896290 -140518952 + MIR SINE MIR 17 228 -34 327 304 204 16 chr6 41897612 41897803 -140517439 + MIR SINE MIR 35 261 -1 812 134 8 0 chr6 41897827 41897946 -140517296 + FRAM SINE Alu 42 161 -15 954 115 0 0 chr6 41897969 41898108 -140517134 - L1MA4A LINE L1 -5 6298 6160 1006 111 53 102 chr6 41898195 41898280 -140516962 + L1PA16 LINE L1 5952 6040 -126 1998 92 14 11 chr6 41898280 41898589 -140516653 + AluSq SINE Alu 1 310 0 1006 111 53 102 chr6 41898589 41898727 -140516515 + L1PA16 LINE L1 6040 6165 -1 1043 186 104 5 chr6 41898834 41899055 -140516187 + MIR SINE MIR 3 245 -17 239 279 38 25 chr6 41899832 41899911 -140515331 - MIR3 SINE MIR -117 91 12 * 2314 247 148 29 chr6 41899897 41901308 -140513934 - L2 LINE L2 -1 3312 1726 501 321 44 0 chr6 41901802 41901961 -140513281 - MER91A DNA MER1_type -30 166 1 1941 161 3 0 chr6 41902102 41902394 -140512848 + AluJo SINE Alu 1 293 -19 2345 103 3 0 chr6 41902814 41903114 -140512128 + AluSx SINE Alu 1 301 -11 366 136 15 30 chr6 41904339 41904405 -140510837 - L2 LINE L2 -2 3311 3247 370 224 0 26 chr6 41904407 41904483 -140510759 + L2 LINE L2 3236 3309 -4 299 260 32 81 chr6 41904496 41904522 -140510720 - MIR SINE MIR -86 176 150 2335 100 0 3 chr6 41904522 41904823 -140510419 + AluSc SINE Alu 1 300 -9 299 260 32 81 chr6 41904823 41904919 -140510323 - MIR SINE MIR -112 150 60 364 104 122 165 chr6 41905137 41905207 -140510035 + ORSL DNA AcHobo 1 66 -209 1939 125 24 24 chr6 41905207 41905494 -140509748 + AluJb SINE Alu 3 289 -23 364 104 122 165 chr6 41905494 41905538 -140509704 + ORSL DNA AcHobo 66 110 -165 237 292 204 0 chr6 41905538 41905651 -140509591 - MIR3 SINE MIR -38 170 35 352 241 35 0 chr6 41905724 41905811 -140509431 - L2 LINE L2 -1 3271 3182 231 258 0 62 chr6 41906280 41906377 -140508865 + L1MC4a LINE L1 4922 5012 -1134 333 307 75 42 chr6 41906449 41906661 -140508581 + L1MC4a LINE L1 5091 5309 -837 1047 174 70 42 chr6 41906686 41906899 -140508343 - MER20 DNA MER1_type 0 219 1 1656 170 13 31 chr6 41907286 41907604 -140507638 + AluJo SINE Alu 1 312 0 2299 119 0 0 chr6 41907622 41907925 -140507317 + AluSg SINE Alu 1 303 -7 284 302 63 56 chr6 41907994 41908120 -140507122 + MIR SINE MIR 115 241 -21 184 313 0 0 chr6 41908148 41908196 -140507046 + MIR SINE MIR 187 234 -28 631 242 7 26 chr6 41908683 41908836 -140506406 + L2 LINE L2 3164 3313 0 472 347 33 9 chr6 41909311 41909524 -140505718 + MIR SINE MIR 45 262 0 385 265 223 42 chr6 41909759 41909925 -140505317 + MER91A DNA MER1_type 1 196 0 502 258 104 14 chr6 41910177 41910398 -140504844 + MER112 DNA MER1_type 8 248 -12 667 231 125 12 chr6 41910403 41910563 -140504679 + MER5A DNA MER1_type 12 189 0 283 277 142 26 chr6 41910915 41911070 -140504172 + MIR3 SINE MIR 21 193 -15 239 299 52 0 chr6 41912130 41912227 -140503015 + LTR16C LTR ERVL 323 424 -67 290 320 40 8 chr6 41912311 41912436 -140502806 + L3 LINE CR1 1393 1521 -56 2160 120 7 3 chr6 41912634 41912933 -140502309 + AluSg SINE Alu 1 300 -10 230 139 0 89 chr6 41912995 41913074 -140502168 - L1MA7 LINE L1 -4 6287 6216 854 145 0 23 chr6 41913077 41913208 -140502034 + FLAM_C SINE Alu 1 128 -5 1592 174 37 37 chr6 41913220 41913518 -140501724 + AluJo SINE Alu 1 298 -14 2156 131 0 25 chr6 41914072 41914392 -140500850 + AluSx SINE Alu 1 312 0 189 0 0 0 chr6 41915860 41915881 -140499361 + (CAGGG)n Simple_repeat Simple_repeat 5 25 0 848 257 166 47 chr6 41916553 41916672 -140498570 + L1MC4a LINE L1 5284 5387 -2421 1755 151 0 7 chr6 41916672 41916943 -140498299 + AluJb SINE Alu 5 273 -39 848 257 166 47 chr6 41916943 41917274 -140497968 + L1MC4a LINE L1 5387 5788 -2020 1042 178 11 0 chr6 41917283 41917468 -140497774 - AluJo SINE Alu 0 312 126 812 224 25 95 chr6 41917539 41917780 -140497462 + MIR SINE MIR 2 225 -37 293 214 0 0 chr6 41917789 41917845 -140497397 + L1MC4a LINE L1 5869 5924 -1884 267 152 0 0 chr6 41917849 41917895 -140497347 + (TATG)n Simple_repeat Simple_repeat 2 47 0 2483 78 0 0 chr6 41918016 41918312 -140496930 - AluSc SINE Alu -13 296 1 25 65 0 0 chr6 41918587 41918633 -140496609 + AT_rich Low_complexity Low_complexity 1 46 0 867 181 0 14 chr6 41920134 41920278 -140494964 - AluJo SINE Alu -92 220 79 1865 165 28 0 chr6 41920413 41920704 -140494538 + AluJb SINE Alu 1 299 -13 1340 243 84 40 chr6 41920826 41921003 -140494239 + L2 LINE L2 2642 2810 -503 2306 76 31 10 chr6 41921003 41921292 -140493950 - AluSp SINE Alu -18 295 1 1340 243 84 40 chr6 41921292 41921489 -140493753 + L2 LINE L2 2810 2997 -316 1811 141 32 0 chr6 41921489 41921766 -140493476 + AluSx SINE Alu 11 296 -16 1340 243 84 40 chr6 41921766 41922032 -140493210 + L2 LINE L2 2997 3313 0 567 290 89 23 chr6 41922169 41922407 -140492835 + MIR SINE MIR 5 256 -6 395 222 131 40 chr6 41922454 41922652 -140492590 - LTR33 LTR ERVL -2 519 304 1643 99 59 136 chr6 41922828 41923151 -140492091 - AluJo SINE Alu -14 298 1 1301 85 40 11 chr6 41923520 41923696 -140491546 - AluJb SINE Alu -3 309 129 1910 149 17 10 chr6 41923744 41924046 -140491196 + AluJb SINE Alu 1 304 -8 439 247 0 0 chr6 41924140 41924237 -140491005 + L1MB7 LINE L1 4778 4874 -1272 4975 116 29 74 chr6 41924237 41925275 -140489967 + MER52C LTR ERV1 1 1278 0 1286 186 97 46 chr6 41925275 41925322 -140489920 + L1MB7 LINE L1 4871 4914 -1232 754 212 0 0 chr6 41925322 41925454 -140489788 + FLAM_A SINE Alu 2 133 0 1286 186 97 46 chr6 41925454 41925798 -140489444 + L1MB7 LINE L1 4914 5282 -864 1422 142 47 63 chr6 41925798 41926051 -140489191 + AluJo SINE Alu 44 292 -20 3676 141 34 6 chr6 41926059 41926727 -140488515 + L1MB7 LINE L1 5289 5975 -209 994 246 133 18 chr6 41926731 41927069 -140488173 + L2 LINE L2 2932 3308 -5 214 102 0 41 chr6 41927113 41927162 -140488080 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 2231 129 0 3 chr6 41927164 41927473 -140487769 - AluSx SINE Alu -4 308 1 735 249 6 0 chr6 41927949 41928114 -140487128 + MER5B DNA MER1_type 5 170 -8 438 317 96 12 chr6 41928123 41928290 -140486952 - MER5A DNA MER1_type 0 189 9 2267 122 0 3 chr6 41928713 41929008 -140486234 + AluSq SINE Alu 1 294 -19 1472 162 67 27 chr6 41929069 41929378 -140485864 - Charlie5 DNA MER1_type 0 2624 2296 1622 177 71 7 chr6 41929378 41929660 -140485582 + AluJb SINE Alu 1 300 -12 1472 162 67 27 chr6 41929660 41929726 -140485516 - Charlie5 DNA MER1_type -328 2296 2234 739 120 16 0 chr6 41929723 41929848 -140485394 - Charlie5 DNA MER1_type -2485 127 1 * 249 192 50 0 chr6 41929887 41930007 -140485235 + (TA)n Simple_repeat Simple_repeat 1 126 0 624 215 0 52 chr6 41930007 41930142 -140485100 - FLAM_C SINE Alu -14 129 2 199 296 80 23 chr6 41930206 41930294 -140484948 - L2 LINE L2 -11 3302 3210 197 305 70 94 chr6 41930473 41930729 -140484513 - L2 LINE L2 -108 3164 2915 399 258 22 0 chr6 41930859 41930948 -140484294 + MER5B DNA MER1_type 39 129 -49 249 139 0 0 chr6 41930949 41930992 -140484250 + (T)n Simple_repeat Simple_repeat 1 43 0 1096 132 7 0 chr6 41931033 41931185 -140484057 - AluSx SINE Alu -159 153 1 275 151 0 19 chr6 41931185 41931238 -140484004 + MER5B DNA MER1_type 121 172 -6 * 422 263 35 18 chr6 41931232 41931346 -140483896 - MIR SINE MIR -131 131 16 1799 164 24 3 chr6 41931618 41931910 -140483332 + AluJb SINE Alu 1 298 -14 5892 107 65 102 chr6 41932273 41932702 -140482540 + Tigger3b DNA MER2_type 1 444 -2584 2209 114 3 0 chr6 41932702 41932999 -140482243 + AluSx SINE Alu 1 298 -14 5892 107 65 102 chr6 41932999 41933404 -140481838 + Tigger3b DNA MER2_type 444 774 -2254 1590 101 14 9 chr6 41933404 41933623 -140481619 - AluSq SINE Alu -12 301 82 5892 107 65 102 chr6 41933623 41934064 -140481178 + Tigger3b DNA MER2_type 774 1230 -1 229 174 0 22 chr6 41934240 41934286 -140480956 + MLT1K LTR MaLR 188 232 -356 2384 101 0 0 chr6 41934557 41934853 -140480389 + AluSg SINE Alu 1 296 -14 578 120 50 0 chr6 41935603 41935703 -140479539 - FLAM_C SINE Alu -11 132 28 2270 100 3 22 chr6 41935969 41936288 -140478954 - AluSq SINE Alu 0 313 1 1692 132 41 37 chr6 41936288 41936583 -140478659 - AluJb SINE Alu -14 298 3 1418 150 29 70 chr6 41936641 41936914 -140478328 + AluJb SINE Alu 32 293 -19 1854 157 4 4 chr6 41937570 41937851 -140477391 + AluJo SINE Alu 1 281 -31 850 170 6 16 chr6 41937851 41938033 -140477209 + GA-rich Low_complexity Low_complexity 1 180 0 585 107 0 0 chr6 41938071 41938155 -140477087 + AluS SINE Alu 5 88 -225 204 40 0 0 chr6 41938171 41938196 -140477046 + (GA)n Simple_repeat Simple_repeat 1 25 0 2159 92 35 0 chr6 41938196 41938480 -140476762 + AluSp SINE Alu 2 295 -18 553 158 5 63 chr6 41938481 41938671 -140476571 + GA-rich Low_complexity Low_complexity 2 180 0 755 206 87 79 chr6 41938888 41939029 -140476213 + MIR SINE MIR 9 147 -115 492 213 119 31 chr6 41939029 41939189 -140476053 + MER104 DNA MER2_type 4 177 -3 2413 86 0 7 chr6 41939193 41939495 -140475747 + AluSq SINE Alu 1 300 -13 755 206 87 79 chr6 41939495 41939600 -140475642 + MIR SINE MIR 149 262 0 1637 167 11 24 chr6 41939696 41939983 -140475259 + AluJb SINE Alu 11 293 -19 2533 81 0 0 chr6 41940096 41940404 -140474838 + AluSx SINE Alu 1 308 -4 2377 89 0 0 chr6 41940406 41940698 -140474544 + AluSc SINE Alu 1 292 -17 614 143 0 0 chr6 41940702 41940786 -140474456 - AluJ/FLAM SINE Alu -227 85 2 1239 265 113 72 chr6 41940794 41941163 -140474079 + HAL1 LINE L1 982 1334 -1173 2424 79 3 0 chr6 41941163 41941466 -140473776 + AluY SINE Alu 1 304 -7 1239 265 113 72 chr6 41941466 41941741 -140473501 + HAL1 LINE L1 1334 1596 -911 1796 174 0 13 chr6 41941741 41942052 -140473190 + AluJo SINE Alu 1 307 -5 1239 265 113 72 chr6 41942052 41942460 -140472782 + HAL1 LINE L1 1596 2078 -429 2232 114 0 3 chr6 41943187 41943474 -140471768 + AluSx SINE Alu 1 288 -24 201 39 0 0 chr6 41943474 41943500 -140471742 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2232 114 0 3 chr6 41943500 41943511 -140471731 + AluSx SINE Alu 288 298 -14 224 389 109 5 chr6 41943617 41944049 -140471193 - L2 LINE L2 -1499 1815 1339 1752 144 35 35 chr6 41944079 41944202 -140471040 + AluJo SINE Alu 1 123 -189 216 0 0 0 chr6 41944202 41944226 -140471016 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1752 144 35 35 chr6 41944226 41944414 -140470828 + AluJo SINE Alu 122 312 0 347 261 22 0 chr6 41944567 41944659 -140470583 + MIR SINE MIR 51 144 -118 2400 63 3 3 chr6 41945090 41945377 -140469865 + AluSq SINE Alu 1 287 -26 2013 136 0 40 chr6 41945499 41945823 -140469419 + AluJo SINE Alu 1 311 -1 191 250 19 0 chr6 41945882 41945934 -140469308 - MER5B DNA MER1_type -3 175 123 2507 54 3 0 chr6 41945942 41946236 -140469006 + AluY SINE Alu 1 295 -16 285 196 0 0 chr6 41946290 41946341 -140468901 + MER5B DNA MER1_type 126 176 -2 204 40 0 0 chr6 41946447 41946472 -140468770 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 310 295 134 0 chr6 41947588 41947700 -140467542 + L2 LINE L2 3136 3262 -10 1087 274 67 16 chr6 41948121 41948684 -140466558 + L1MC4a LINE L1 5488 5605 -516 23 68 0 0 chr6 41948744 41948788 -140466454 + AT_rich Low_complexity Low_complexity 1 44 0 2368 90 0 7 chr6 41948797 41949097 -140466145 + AluSx SINE Alu 1 298 -14 287 156 0 0 chr6 41949113 41949158 -140466084 + L1MC4 LINE L1 7783 7827 -215 1786 155 30 0 chr6 41949214 41949510 -140465732 + AluJo SINE Alu 1 305 -7 242 279 13 0 chr6 41949516 41949595 -140465647 + L1MD3 LINE L1 7901 7980 -15 680 200 0 0 chr6 41949675 41949790 -140465452 - FLAM_A SINE Alu -22 120 6 183 119 34 17 chr6 41950112 41950171 -140465071 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 587 278 113 63 chr6 41950338 41950673 -140464569 + L2 LINE L2 2920 3271 -1 23 0 0 0 chr6 41951511 41951534 -140463708 + GC_rich Low_complexity Low_complexity 1 23 0 545 177 11 11 chr6 41952181 41952294 -140462948 + L1MB7 LINE L1 6054 6166 0 2538 46 7 0 chr6 41952386 41952690 -140462552 + AluY SINE Alu 1 306 -5 1096 57 43 7 chr6 41952745 41952886 -140462356 + AluSq/x SINE Alu 1 146 -166 485 143 0 0 chr6 41952886 41952956 -140462286 + AluS SINE Alu 221 290 -20 22 0 0 0 chr6 41953504 41953526 -140461716 + AT_rich Low_complexity Low_complexity 1 22 0 2153 112 0 10 chr6 41953529 41953832 -140461410 + AluSx SINE Alu 1 300 -12 216 0 0 0 chr6 41953832 41953856 -140461386 + (TA)n Simple_repeat Simple_repeat 2 25 0 2445 93 3 0 chr6 41954384 41954696 -140460546 - AluSq SINE Alu 0 313 1 2389 78 24 0 chr6 41955032 41955327 -140459915 - AluSg SINE Alu -8 302 1 1755 138 12 43 chr6 41955525 41955852 -140459390 - MER33 DNA MER1_type 0 324 8 1852 91 4 0 chr6 41956191 41956432 -140458810 + AluY SINE Alu 1 242 -69 396 54 0 36 chr6 41956773 41956829 -140458413 - AluSx SINE Alu -7 294 241 1136 118 0 0 chr6 41956829 41956982 -140458260 - AluSx SINE Alu -159 153 1 1813 151 7 24 chr6 41957022 41957313 -140457929 + AluJb SINE Alu 12 297 -15 2357 106 3 0 chr6 41957519 41957831 -140457411 - AluSq SINE Alu 0 313 1 1962 139 0 26 chr6 41957943 41958246 -140456996 + AluSx SINE Alu 1 295 -17 2325 183 112 0 chr6 41958317 41958771 -140456471 + MLT1D LTR MaLR 1 505 0 2148 88 0 76 chr6 41958812 41959142 -140456100 - AluSx SINE Alu -7 305 1 460 298 9 0 chr6 41959360 41959474 -140455768 - L2 LINE L2 -22 3250 3136 1822 171 3 0 chr6 41959511 41959797 -140455445 + AluJb SINE Alu 1 287 -25 2090 119 3 0 chr6 41959817 41960102 -140455140 + AluSx SINE Alu 3 288 -24 348 361 11 31 chr6 41960157 41960348 -140454894 - L2 LINE L2 -190 3082 2896 351 302 30 90 chr6 41960487 41960888 -140454354 + HAL1 LINE L1 159 535 -1972 592 277 65 50 chr6 41961021 41961418 -140453824 + HAL1 LINE L1 748 1150 -1357 2182 102 10 22 chr6 41961564 41961877 -140453365 + AluY SINE Alu 1 309 -2 320 253 90 30 chr6 41961929 41962095 -140453147 + L1MC4 LINE L1 7865 8040 -2 619 139 30 0 chr6 41962121 41962222 -140453020 + FRAM SINE Alu 73 176 0 266 244 130 17 chr6 41962223 41962338 -140452904 + HAL1 LINE L1 1282 1409 -1098 263 190 112 51 chr6 41962315 41962445 -140452797 + L1MC5 LINE L1 7832 8042 0 * 21 0 0 0 chr6 41962459 41962480 -140452762 + AT_rich Low_complexity Low_complexity 1 21 0 413 187 108 101 chr6 41963041 41963180 -140452062 + HAL1 LINE L1 1153 1292 -1215 576 155 198 9 chr6 41963185 41963301 -140451941 + AluJo SINE Alu 2 139 -173 1767 145 22 35 chr6 41963302 41963613 -140451629 + AluJo SINE Alu 1 307 -5 1051 222 164 29 chr6 41963613 41964028 -140451214 + HAL1 LINE L1 1293 1763 -744 28 0 0 0 chr6 41964105 41964133 -140451109 + AT_rich Low_complexity Low_complexity 1 28 0 464 287 156 82 chr6 41964153 41964801 -140450441 - L2 LINE L2 -420 2894 2199 298 246 14 0 chr6 41964833 41964902 -140450340 - L2 LINE L2 -15 3298 3229 812 258 40 57 chr6 41964927 41965030 -140450212 + MER20B DNA MER1_type 2 105 -678 2367 103 0 3 chr6 41965030 41965340 -140449902 + AluSx SINE Alu 1 309 -3 812 258 40 57 chr6 41965340 41965535 -140449707 + MER20B DNA MER1_type 105 295 -488 2478 63 0 10 chr6 41965541 41965842 -140449400 - AluY SINE Alu -13 298 1 2438 70 17 0 chr6 41965847 41966146 -140449096 - AluSx SINE Alu -8 304 1 2452 67 3 0 chr6 41966447 41966747 -140448495 - AluY SINE Alu -9 302 2 2148 70 22 4 chr6 41967035 41967306 -140447936 - AluSx SINE Alu -18 294 19 2103 112 0 3 chr6 41967356 41967643 -140447599 + AluSx SINE Alu 1 286 -26 1445 156 13 0 chr6 41967916 41968140 -140447102 + AluJo SINE Alu 72 298 -14 24 0 0 0 chr6 41968275 41968299 -140446943 + AT_rich Low_complexity Low_complexity 1 24 0 1987 94 36 59 chr6 41968315 41968622 -140446620 + AluY SINE Alu 1 300 -11 809 157 14 7 chr6 41969017 41969157 -140446085 + BC200 scRNA scRNA 7 147 -53 364 251 46 73 chr6 41969377 41969584 -140445658 + MLT1J2 LTR MaLR 13 212 -197 1738 94 0 21 chr6 41970122 41970355 -140444887 - AluSq SINE Alu -85 228 1 27 29 0 0 chr6 41971001 41971035 -140444207 + GC_rich Low_complexity Low_complexity 1 34 0 2440 86 0 0 chr6 41973006 41973309 -140441933 + AluSx SINE Alu 1 303 -9 2509 66 0 3 chr6 41974051 41974354 -140440888 - AluSq SINE Alu -11 302 1 25 0 0 0 chr6 41974363 41974388 -140440854 + AT_rich Low_complexity Low_complexity 1 25 0 752 155 0 61 chr6 41974532 41974680 -140440562 + FLAM_C SINE Alu 2 140 -3 353 299 43 0 chr6 41974970 41975087 -140440155 - MIR SINE MIR -112 150 29 677 228 146 14 chr6 41975132 41975351 -140439891 + MIR SINE MIR 13 260 -2 2077 142 0 7 chr6 41975372 41975682 -140439560 + AluSx SINE Alu 1 308 -4 1753 180 0 0 chr6 41975739 41976022 -140439220 + AluJo SINE Alu 5 287 -25 258 156 0 0 chr6 41976022 41976067 -140439175 + (TA)n Simple_repeat Simple_repeat 1 45 0 1947 126 82 28 chr6 41976553 41976731 -140438511 - MLT1B LTR MaLR 0 390 223 5867 56 0 141 chr6 41976731 41977693 -140437549 - LTR12 LTR ERV1 0 826 1 1947 126 82 28 chr6 41977693 41977878 -140437364 - MLT1B LTR MaLR -167 223 7 2676 58 0 0 chr6 41977909 41978220 -140437022 + AluY SINE Alu 1 311 0 2311 117 0 0 chr6 41978232 41978532 -140436710 + AluSx SINE Alu 1 300 -12 1869 159 10 3 chr6 41978917 41979213 -140436029 - 7SLRNA srpRNA srpRNA 0 320 23 1775 187 3 7 chr6 41979522 41979816 -140435426 - AluJo SINE Alu -19 293 1 2053 145 10 0 chr6 41979840 41980137 -140435105 - AluSx SINE Alu -12 300 1 1898 243 110 17 chr6 41980137 41980563 -140434679 - L1M4 LINE L1 -2270 3876 3491 2204 114 17 0 chr6 41980563 41980862 -140434380 - AluSg SINE Alu -6 304 1 524 172 35 17 chr6 41980870 41980986 -140434256 - L1MB8 LINE L1 -1 6177 6060 1898 243 110 17 chr6 41980986 41981026 -140434216 - L1M4 LINE L1 -2661 3485 3450 2270 103 0 13 chr6 41981026 41981338 -140433904 - AluSx SINE Alu -4 308 1 195 42 0 0 chr6 41981338 41981362 -140433880 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1898 243 110 17 chr6 41981362 41981532 -140433710 - L1M4 LINE L1 -2696 3450 3297 2341 89 16 0 chr6 41981532 41981836 -140433406 - AluSp SINE Alu -4 309 1 1898 243 110 17 chr6 41981836 41982175 -140433067 - L1M4 LINE L1 -2849 3297 2669 608 169 223 0 chr6 41982244 41982374 -140432868 + MER58A DNA MER1_type 39 197 -27 2340 95 0 0 chr6 41982374 41982668 -140432574 - AluSx SINE Alu -18 294 1 1878 125 7 36 chr6 41982668 41982972 -140432270 - AluSx SINE Alu -15 297 3 2224 123 0 0 chr6 41983200 41983509 -140431733 + AluSx SINE Alu 1 309 -3 1464 213 30 65 chr6 41983637 41983669 -140431573 - MLT2C1 LTR ERVL -8 389 357 234 0 0 0 chr6 41983669 41983695 -140431547 + (TG)n Simple_repeat Simple_repeat 2 27 0 1464 213 30 65 chr6 41983695 41984065 -140431177 - MLT2C1 LTR ERVL -40 357 1 770 110 128 0 chr6 41984249 41984358 -140430884 + FLAM_C SINE Alu 1 123 -10 2354 87 0 0 chr6 41984363 41984651 -140430591 - AluSx SINE Alu -22 290 3 959 204 0 12 chr6 41984653 41984825 -140430417 - AluJ SINE Alu -5 307 138 299 266 43 11 chr6 41984865 41984959 -140430283 - AluJo SINE Alu -122 180 84 1217 113 24 66 chr6 41984959 41985172 -140430070 - AluJb SINE Alu -108 204 1 796 158 24 8 chr6 41985172 41985299 -140429943 - AluJ SINE Alu -176 136 8 1477 166 4 24 chr6 41985500 41985753 -140429489 + AluJo SINE Alu 1 248 -64 243 326 136 22 chr6 41985753 41985937 -140429305 + L3 LINE CR1 1146 1350 -227 1109 156 0 38 chr6 41986136 41986322 -140428920 - AluJb SINE Alu -21 291 113 2459 86 0 10 chr6 41986330 41986644 -140428598 + AluSp SINE Alu 1 311 -2 757 86 0 0 chr6 41986751 41986844 -140428398 - AluJ/FLAM SINE Alu -217 95 3 1266 162 4 60 chr6 41986873 41987108 -140428134 + AluJo SINE Alu 1 222 -90 22 35 0 0 chr6 41987147 41987176 -140428066 + AT_rich Low_complexity Low_complexity 1 29 0 2297 88 3 20 chr6 41987187 41987492 -140427750 + AluSx SINE Alu 1 300 -12 243 167 0 0 chr6 41987560 41987602 -140427640 + HsTC2 DNA Tc2 33 74 -1824 2029 121 24 3 chr6 41988479 41988768 -140426474 - AluSq SINE Alu -18 295 1 799 258 95 5 chr6 41989008 41989229 -140426013 + MIR SINE MIR 9 249 -13 314 238 57 57 chr6 41990212 41990334 -140424908 - L1M4 LINE L1 -3774 2372 2251 206 256 13 115 chr6 41990566 41990605 -140424637 + MIR3 SINE MIR 121 150 -58 627 198 77 39 chr6 41990605 41990787 -140424455 + MER5A DNA MER1_type 1 189 0 206 256 13 115 chr6 41990787 41990825 -140424417 + MIR3 SINE MIR 150 190 -18 210 208 0 57 chr6 41990859 41990912 -140424330 + L2 LINE L2 3178 3227 -86 1120 239 119 79 chr6 41991430 41991678 -140423564 + L1MC4a LINE L1 5785 6022 -1786 1475 180 120 27 chr6 41991678 41992012 -140423230 + MLT1A1 LTR MaLR 1 365 0 1120 239 119 79 chr6 41992012 41992386 -140422856 + L1MC4a LINE L1 6022 6432 -1376 933 189 18 6 chr6 41992502 41992671 -140422571 - AluJb SINE Alu -30 282 112 2237 97 0 3 chr6 41993189 41993477 -140421765 + AluSg SINE Alu 11 297 -13 183 42 0 0 chr6 41993541 41993565 -140421677 + (T)n Simple_repeat Simple_repeat 1 24 0 22 56 0 0 chr6 41993913 41993949 -140421293 + AT_rich Low_complexity Low_complexity 1 36 0 2234 97 33 0 chr6 41994226 41994526 -140420716 - AluSx SINE Alu -2 310 1 2062 163 0 0 chr6 41994538 41994845 -140420397 - AluJo SINE Alu -5 307 1 2367 64 7 0 chr6 41995314 41995611 -140419631 - AluY SINE Alu -12 299 1 226 195 26 39 chr6 41995779 41995856 -140419386 + L1M4 LINE L1 5793 5868 -306 22 0 0 0 chr6 41996103 41996125 -140419117 + AT_rich Low_complexity Low_complexity 1 22 0 274 357 45 9 chr6 41998450 41998562 -140416680 + MIR SINE MIR 16 131 -77 1345 150 9 4 chr6 41998567 41998793 -140416449 - AluJb SINE Alu -1 311 85 182 216 52 124 chr6 41998796 41998843 -140416399 + MIR SINE MIR 117 155 -107 2146 120 0 3 chr6 41998843 41999143 -140416099 + AluSx SINE Alu 1 299 -13 182 216 52 124 chr6 41999143 41999192 -140416050 + MIR SINE MIR 155 206 -56 573 257 151 6 chr6 41999247 41999309 -140415933 - MIR SINE MIR 0 262 210 700 156 278 0 chr6 41999309 41999482 -140415760 + MER58A DNA MER1_type 1 221 -3 573 257 151 6 chr6 41999482 41999598 -140415644 - MIR SINE MIR -52 210 58 2559 57 0 0 chr6 41999822 42000123 -140415119 - AluY SINE Alu -10 301 1 415 141 78 0 chr6 42000677 42000741 -140414501 + AluS SINE Alu 2 70 -243 1124 140 6 0 chr6 42000878 42001042 -140414200 - AluSg/x SINE Alu -14 298 134 2420 71 0 7 chr6 42001042 42001337 -140413905 - AluY SINE Alu -18 293 1 2446 84 0 3 chr6 42001466 42001776 -140413466 + AluY SINE Alu 1 309 -2 272 26 0 26 chr6 42002032 42002070 -140413172 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1482 34 0 0 chr6 42002071 42002246 -140412996 - L1PA2 LINE L1 -22 6133 5959 2362 84 0 13 chr6 42003139 42003438 -140411804 + AluSx SINE Alu 1 295 -17 2388 97 0 0 chr6 42004404 42004703 -140410539 - AluSg SINE Alu -11 299 1 1440 60 6 0 chr6 42005447 42005629 -140409613 - AluY SINE Alu -3 308 126 467 67 17 0 chr6 42005737 42005797 -140409445 - Alu SINE Alu -249 62 2 2255 62 41 7 chr6 42005839 42006130 -140409112 + AluY SINE Alu 2 302 -9 2366 96 0 6 chr6 42007794 42008108 -140407134 - AluSx SINE Alu 0 312 1 945 114 0 50 chr6 42008431 42008571 -140406671 - FLAM_A SINE Alu 0 133 1 2053 102 35 3 chr6 42008583 42008866 -140406376 - AluSx SINE Alu -20 292 1 245 302 277 19 chr6 42008883 42009042 -140406200 - MIR SINE MIR -44 218 19 2236 100 0 3 chr6 42010286 42010585 -140404657 + AluSg SINE Alu 1 298 -12 353 247 75 0 chr6 42010585 42010678 -140404564 - L1ME4a LINE L1 -287 5834 5735 2302 116 0 0 chr6 42010678 42010980 -140404262 + AluSx SINE Alu 1 302 -10 1267 105 0 12 chr6 42010981 42011152 -140404090 + AluSg/x SINE Alu 131 299 -11 417 221 55 16 chr6 42011156 42011283 -140403959 - L1ME4a LINE L1 -513 5608 5477 1485 108 5 0 chr6 42011311 42011506 -140403736 - AluSx SINE Alu -96 216 21 1477 204 3 17 chr6 42011539 42011833 -140403409 - AluJo SINE Alu -22 290 1 400 226 41 95 chr6 42011837 42011954 -140403288 - L1ME4a LINE L1 -2311 5497 5398 2091 115 17 0 chr6 42011954 42012249 -140402993 - AluSq SINE Alu -13 300 1 400 226 41 95 chr6 42012249 42012374 -140402868 - L1ME4a LINE L1 -2410 5398 5268 241 269 0 0 chr6 42013234 42013286 -140401956 + AluJ/monomer SINE Alu 1 52 -247 410 93 0 0 chr6 42013288 42013342 -140401900 + AluSp/q SINE Alu 243 296 -17 2395 73 7 0 chr6 42013503 42013806 -140401436 - AluY SINE Alu -6 305 1 1607 179 7 24 chr6 42013925 42014222 -140401020 - AluJo SINE Alu -20 292 1 427 291 141 17 chr6 42014291 42014532 -140400710 - L3 LINE CR1 -148 1429 1159 1015 129 269 0 chr6 42016543 42016729 -140398513 - MER46A DNA MER2_type 0 236 1 2392 83 0 7 chr6 42018267 42018569 -140396673 + AluSx SINE Alu 1 300 -12 1565 155 70 22 chr6 42018580 42018851 -140396391 + AluJb SINE Alu 1 284 -28 21 0 0 0 chr6 42019134 42019155 -140396087 + AT_rich Low_complexity Low_complexity 1 21 0 2201 112 3 7 chr6 42019206 42019502 -140395740 + AluSx SINE Alu 1 295 -17 1886 147 20 7 chr6 42020250 42020549 -140394693 - AluJb SINE Alu -9 303 1 2350 95 0 10 chr6 42021081 42021387 -140393855 - AluSc SINE Alu -6 303 1 423 102 0 0 chr6 42021823 42021882 -140393360 + U2 snRNA snRNA 1 59 -129 2366 87 3 0 chr6 42024058 42024356 -140390886 - AluSc SINE Alu -10 299 1 1964 148 27 0 chr6 42025949 42026246 -140388996 - AluJb SINE Alu -7 305 1 2077 146 3 13 chr6 42026590 42026905 -140388337 - AluJo SINE Alu 0 312 1 201 243 0 0 chr6 42028264 42028301 -140386941 - L2 LINE L2 -19 3253 3217 312 316 91 8 chr6 42028339 42028483 -140386759 - MIR SINE MIR -55 207 54 2584 57 0 0 chr6 42028494 42028794 -140386448 + AluSc SINE Alu 1 300 -9 1749 137 27 20 chr6 42028975 42029267 -140385975 - AluJo SINE Alu -18 294 1 195 182 76 30 chr6 42029362 42029428 -140385814 - MIR SINE MIR -10 252 184 1127 101 0 7 chr6 42029590 42029739 -140385503 - AluSq/x SINE Alu -164 148 1 735 263 96 31 chr6 42029739 42030158 -140385084 - L1ME3 LINE L1 -278 5884 5439 1001 138 0 13 chr6 42030158 42030310 -140384932 - FRAM SINE Alu -15 161 12 429 252 34 37 chr6 42030326 42030568 -140384674 - L1ME3 LINE L1 -730 5432 5193 871 280 107 13 chr6 42030813 42031195 -140384047 - L1ME3 LINE L1 -188 5974 5557 483 276 150 8 chr6 42031197 42031443 -140383799 - L1ME3 LINE L1 -935 5211 4931 243 61 0 0 chr6 42031444 42031477 -140383765 + (TG)n Simple_repeat Simple_repeat 1 33 0 305 339 80 31 chr6 42032484 42032770 -140382472 + L3b LINE CR1 1167 1466 -117 357 159 0 0 chr6 42032913 42032976 -140382266 + A-rich Low_complexity Low_complexity 1 63 0 860 237 24 0 chr6 42033072 42033241 -140382001 + MER5B DNA MER1_type 5 177 -1 1936 164 0 7 chr6 42035945 42036250 -140378992 - AluJb SINE Alu -9 303 1 7240 184 148 34 chr6 42036589 42037377 -140377865 - MER52A LTR ERV1 0 1755 1058 2123 175 100 46 chr6 42037377 42037856 -140377386 + LTR22 LTR ERVK 5 509 0 7240 184 148 34 chr6 42037856 42038642 -140376600 - MER52A LTR ERV1 -697 1058 1 189 281 0 35 chr6 42038924 42038981 -140376261 + MIR SINE MIR 187 241 -21 279 274 108 20 chr6 42039046 42039148 -140376094 - MIR SINE MIR -132 130 20 2304 107 0 7 chr6 42039362 42039670 -140375572 - AluSg1 SINE Alu -3 306 1 2303 122 0 0 chr6 42039791 42040102 -140375140 + AluSx SINE Alu 1 311 -1 281 233 183 62 chr6 42040507 42040675 -140374567 + L1ME4a LINE L1 5839 6046 -75 2337 90 3 3 chr6 42040675 42040974 -140374268 - AluSx SINE Alu -13 299 1 281 233 183 62 chr6 42040974 42041045 -140374197 + L1ME4a LINE L1 6046 6107 -14 2171 123 0 0 chr6 42041047 42041332 -140373910 - AluSg SINE Alu -25 285 1 2406 81 0 10 chr6 42041332 42041630 -140373612 - AluSc SINE Alu -14 295 1 261 224 26 13 chr6 42041642 42041718 -140373524 - L1MA6 LINE L1 -271 6029 5953 1514 182 14 44 chr6 42041744 42041888 -140373354 + AluJo SINE Alu 9 141 -171 2556 60 0 0 chr6 42041888 42042188 -140373054 + AluY SINE Alu 1 300 -11 1514 182 14 44 chr6 42042188 42042339 -140372903 + AluJo SINE Alu 141 295 -17 410 324 7 7 chr6 42042482 42042624 -140372618 - MIR3 SINE MIR -10 198 57 1294 79 0 12 chr6 42042718 42042883 -140372359 + AluSg/x SINE Alu 138 300 -10 342 0 0 0 chr6 42043533 42043571 -140371671 + (CA)n Simple_repeat Simple_repeat 1 38 0 1053 139 0 32 chr6 42046578 42046736 -140368506 - FRAM SINE Alu -23 153 1 1943 153 3 41 chr6 42050205 42050519 -140364723 + 7SLRNA srpRNA srpRNA 1 302 -18 2364 100 7 3 chr6 42050589 42050899 -140364343 + AluSx SINE Alu 1 311 -1 2480 80 3 0 chr6 42051273 42051574 -140363668 - AluSg SINE Alu -8 302 1 1449 65 20 20 chr6 42053062 42053263 -140361979 + L1PA8 LINE L1 5966 6166 -6 1532 170 89 0 chr6 42053886 42054145 -140361097 - AluJb SINE Alu -30 282 1 1040 111 7 0 chr6 42054492 42054627 -140360615 + AluSx SINE Alu 1 136 -177 2173 110 3 13 chr6 42054627 42054926 -140360316 + AluSx SINE Alu 1 296 -16 2338 104 0 0 chr6 42054926 42055223 -140360019 + AluSg SINE Alu 1 297 -13 227 303 0 0 chr6 42055242 42055331 -140359911 + L1MC4 LINE L1 6614 6702 -1340 * 247 191 16 0 chr6 42055312 42055375 -140359867 - L1MC4 LINE L1 -1339 6703 6640 1033 178 0 11 chr6 42055407 42055581 -140359661 + AluSx SINE Alu 123 294 -16 2368 72 0 33 chr6 42055832 42056136 -140359106 + AluY SINE Alu 1 294 -17 231 355 56 28 chr6 42056202 42056416 -140358826 - L2 LINE L2 -520 2794 2575 345 266 73 49 chr6 42057141 42057427 -140357815 + L1MC5 LINE L1 7636 7928 -33 2178 120 0 0 chr6 42057973 42058273 -140356969 + AluSx SINE Alu 1 300 -12 2232 102 0 10 chr6 42058386 42058681 -140356561 - AluSx SINE Alu -20 292 1 2086 141 3 3 chr6 42058692 42059004 -140356238 - AluSx SINE Alu 0 312 1 848 139 48 42 chr6 42060177 42060343 -140354899 + FRAM SINE Alu 1 167 -9 2215 94 20 14 chr6 42060508 42060644 -140354598 + AluSx SINE Alu 1 135 -177 1818 164 44 0 chr6 42060644 42060937 -140354305 + AluSx SINE Alu 1 306 -6 2215 94 20 14 chr6 42060937 42061097 -140354145 + AluSx SINE Alu 135 299 -13 990 172 0 18 chr6 42061163 42061326 -140353916 - FRAM SINE Alu -6 160 1 24 32 0 0 chr6 42061464 42061495 -140353747 + AT_rich Low_complexity Low_complexity 1 31 0 4663 206 49 75 chr6 42062059 42062381 -140352861 + L1ME2 LINE L1 3726 4055 -2109 1696 193 7 13 chr6 42062381 42062686 -140352556 + AluJo SINE Alu 1 303 -9 4663 206 49 75 chr6 42062686 42063184 -140352058 + L1ME2 LINE L1 4055 4564 -1600 2083 107 14 7 chr6 42063184 42063507 -140351735 + AluSq SINE Alu 1 313 0 4663 206 49 75 chr6 42063507 42063610 -140351632 + L1ME2 LINE L1 4564 4668 -1496 2299 108 0 0 chr6 42063610 42063907 -140351335 + AluSc SINE Alu 1 297 -12 4663 206 49 75 chr6 42063907 42064403 -140350839 + L1ME2 LINE L1 4668 5175 -989 707 173 31 0 chr6 42064403 42064530 -140350712 + AluJo/FLAM SINE Alu 1 131 -171 2375 72 3 28 chr6 42064530 42064850 -140350392 - AluSp SINE Alu -1 312 1 4663 206 49 75 chr6 42064850 42065630 -140349612 + L1ME2 LINE L1 5174 5973 -191 2065 141 0 3 chr6 42065630 42065927 -140349315 + AluJb SINE Alu 1 296 -16 4663 206 49 75 chr6 42065927 42066035 -140349207 + L1ME2 LINE L1 5973 5972 -192 2452 84 0 13 chr6 42066035 42066346 -140348896 + AluY SINE Alu 3 309 -2 4663 206 49 75 chr6 42066346 42066521 -140348721 + L1ME2 LINE L1 5971 6149 -15 2163 96 48 3 chr6 42066640 42066932 -140348310 + AluSc SINE Alu 1 305 -4 2215 107 0 0 chr6 42067126 42067415 -140347827 + AluSx SINE Alu 9 297 -15 601 307 49 8 chr6 42067484 42067728 -140347514 - MIR SINE MIR -7 255 2 623 155 19 0 chr6 42067760 42067863 -140347379 - FLAM_A SINE Alu -3 139 35 452 193 41 181 chr6 42068215 42068491 -140346751 + L1ME LINE L1 5464 5707 -414 1439 106 4 2 chr6 42068643 42068888 -140346354 - AluSp SINE Alu -15 298 1 2176 91 0 7 chr6 42068902 42069214 -140346028 - AluY SINE Alu 0 310 1 493 208 79 0 chr6 42069320 42069421 -140345821 + FLAM_C SINE Alu 18 126 -17 433 285 125 32 chr6 42069454 42069834 -140345408 + L1ME4a LINE L1 5637 6057 -64 2092 146 0 19 chr6 42069834 42070149 -140345093 - AluSx SINE Alu -3 309 1 433 285 125 32 chr6 42070149 42070168 -140345074 + L1ME4a LINE L1 6057 6073 -48 888 157 31 0 chr6 42070516 42070675 -140344567 + AluSg/x SINE Alu 134 297 -13 2368 91 3 3 chr6 42070677 42070985 -140344257 + AluSx SINE Alu 1 308 -4 2543 51 0 3 chr6 42071084 42071379 -140343863 - AluY SINE Alu -17 294 1 656 157 0 119 chr6 42071477 42071611 -140343631 + FLAM_C SINE Alu 1 118 -15 2098 122 28 0 chr6 42071660 42071948 -140343294 - AluSx SINE Alu -16 296 1 1333 178 67 11 chr6 42072618 42072921 -140342321 + AluJb SINE Alu 2 319 0 2326 97 16 10 chr6 42073022 42073333 -140341909 + AluSq SINE Alu 1 313 0 523 203 68 31 chr6 42075671 42075834 -140339408 - L1MD3 LINE L1 -11 7984 7816 306 248 76 62 chr6 42075833 42075978 -140339264 - L1MD2 LINE L1 -127 6232 6086 * 1667 177 3 0 chr6 42076402 42076684 -140338558 + AluJo SINE Alu 2 284 -28 338 346 8 8 chr6 42076892 42077019 -140338223 - MIR3 SINE MIR -67 141 15 2148 86 0 61 chr6 42077150 42077325 -140337917 - AluSc SINE Alu -15 294 110 795 75 0 0 chr6 42077325 42077432 -140337810 + (TTC)n Simple_repeat Simple_repeat 2 108 0 2475 43 0 0 chr6 42077432 42077714 -140337528 - AluY SINE Alu -29 282 1 2148 86 0 61 chr6 42077714 42077850 -140337392 - AluSc SINE Alu -197 112 1 336 96 0 19 chr6 42077989 42078041 -140337201 + LTR67 LTR ERVL 3 53 -504 1560 151 33 19 chr6 42078134 42078430 -140336812 - AluJo SINE Alu 0 310 11 677 101 121 67 chr6 42078447 42078596 -140336646 - MER96B DNA MER1_type? -246 171 15 434 215 166 6 chr6 42078819 42078976 -140336266 - MER5A DNA MER1_type 0 189 4 667 211 122 0 chr6 42079051 42079207 -140336035 - MER96 DNA MER1_type 0 175 1 1059 172 0 0 chr6 42079256 42079419 -140335823 - AluJb SINE Alu -13 299 137 2197 109 0 0 chr6 42079446 42079755 -140335487 - AluSx SINE Alu 0 309 1 1609 185 26 0 chr6 42079773 42080043 -140335199 - AluJb SINE Alu -35 277 1 438 180 50 10 chr6 42080223 42080323 -140334919 + L1ME4a LINE L1 5989 6092 -29 736 206 83 40 chr6 42080344 42080620 -140334622 - HAL1 LINE L1 0 2507 2220 430 253 20 69 chr6 42080671 42080873 -140334369 - HAL1 LINE L1 -429 2078 1887 2655 113 33 88 chr6 42080873 42081235 -140334007 - MLT2C2 LTR ERVL 0 464 134 2120 106 35 0 chr6 42081235 42081517 -140333725 + AluSx SINE Alu 1 292 -20 2655 113 33 88 chr6 42081517 42081640 -140333602 - MLT2C2 LTR ERVL -330 134 6 189 0 0 0 chr6 42081674 42081695 -140333547 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1949 125 0 73 chr6 42081798 42081952 -140333290 + AluJb SINE Alu 3 122 -190 2353 96 0 0 chr6 42081952 42082244 -140332998 + AluSx SINE Alu 9 300 -12 1949 125 0 73 chr6 42082244 42082417 -140332825 + AluJb SINE Alu 122 306 -6 2299 84 0 19 chr6 42082478 42082789 -140332453 + AluY SINE Alu 1 305 -6 408 143 0 0 chr6 42083474 42083544 -140331698 + (CA)n Simple_repeat Simple_repeat 1 70 0 279 0 0 0 chr6 42083918 42083949 -140331293 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 516 16 0 0 chr6 42083948 42084009 -140331233 + (TC)n Simple_repeat Simple_repeat 1 61 0 493 214 92 8 chr6 42084026 42084157 -140331085 + MER103 DNA DNA 15 156 -10 619 304 22 11 chr6 42084396 42084580 -140330662 - MIR3 SINE MIR -7 201 16 2046 104 17 3 chr6 42084806 42085103 -140330139 - AluSq SINE Alu -8 305 5 360 249 191 32 chr6 42085235 42085424 -140329818 - L1MC4a LINE L1 -1682 6126 5908 235 205 33 131 chr6 42085433 42085502 -140329740 + MIR3 SINE MIR 92 145 -63 2186 83 0 0 chr6 42085502 42085790 -140329452 + AluY SINE Alu 9 296 -15 235 205 33 131 chr6 42085790 42085842 -140329400 + MIR3 SINE MIR 145 201 -7 2134 74 24 20 chr6 42086394 42086692 -140328550 - AluY SINE Alu -12 299 1 1092 98 0 0 chr6 42086693 42086836 -140328406 - AluSg SINE Alu -167 143 1 2076 118 0 0 chr6 42087840 42088129 -140327113 - AluSx SINE Alu -23 289 1 1682 154 7 17 chr6 42088141 42088433 -140326809 - AluJo SINE Alu -23 289 1 667 289 116 16 chr6 42088460 42088771 -140326471 + L2 LINE L2 1976 2317 -997 411 283 155 72 chr6 42088882 42089367 -140325875 + L2 LINE L2 1310 1864 -1450 2046 127 0 0 chr6 42089367 42089659 -140325583 + AluSg SINE Alu 1 292 -18 411 283 155 72 chr6 42089659 42089824 -140325418 + L2 LINE L2 1864 2014 -1300 2020 134 0 0 chr6 42090949 42091270 -140323972 + AluSg SINE Alu 1 310 0 1583 104 73 98 chr6 42092003 42092186 -140323056 - AluSq SINE Alu 0 313 140 2297 94 0 0 chr6 42092186 42092495 -140322747 - AluSg SINE Alu 0 310 2 1583 104 73 98 chr6 42092495 42092628 -140322614 - AluSq SINE Alu -173 140 5 2062 112 3 0 chr6 42092832 42093127 -140322115 + AluSq SINE Alu 1 296 -17 2123 88 0 3 chr6 42093130 42093449 -140321793 + AluY SINE Alu 1 318 0 23 33 0 0 chr6 42093469 42093499 -140321743 + AT_rich Low_complexity Low_complexity 1 30 0 293 338 58 0 chr6 42093501 42093640 -140321602 - MIR SINE MIR -6 256 110 657 266 47 0 chr6 42093651 42093751 -140321491 + MER69A DNA AcHobo 1 114 -2412 2121 129 0 0 chr6 42093751 42094060 -140321182 - AluSx SINE Alu -3 309 1 657 266 47 0 chr6 42094060 42094128 -140321114 + MER69A DNA AcHobo 114 177 0 2195 98 0 7 chr6 42094339 42094645 -140320597 - AluSq SINE Alu -9 304 1 634 260 6 39 chr6 42094695 42094876 -140320366 + MIR SINE MIR 5 179 -83 615 200 26 68 chr6 42094908 42095098 -140320144 - MER112 DNA MER1_type -7 253 72 1694 178 3 3 chr6 42095110 42095413 -140319829 + AluJb SINE Alu 1 303 -9 260 177 10 146 chr6 42095422 42095464 -140319778 - MER112 DNA MER1_type -177 83 60 2037 55 95 0 chr6 42095464 42095737 -140319505 - AluY SINE Alu -12 299 1 260 177 10 146 chr6 42095737 42095790 -140319452 - MER112 DNA MER1_type -200 60 1 293 250 0 0 chr6 42095790 42095862 -140319380 + MIR SINE MIR 191 262 0 2049 108 0 3 chr6 42095977 42096287 -140318955 - AluSx SINE Alu 0 309 1 350 260 114 0 chr6 42096296 42096419 -140318823 - L1ME4a LINE L1 -4 6117 5981 1892 131 3 10 chr6 42096431 42096728 -140318514 - AluSx SINE Alu -17 295 1 1978 90 0 21 chr6 42096912 42097246 -140317996 - AluY SINE Alu 0 328 1 276 259 152 56 chr6 42097246 42097282 -140317960 - L1MC4 LINE L1 -334 7708 7677 2009 125 7 0 chr6 42097282 42097579 -140317663 - AluSx SINE Alu -13 299 1 276 259 152 56 chr6 42097579 42097739 -140317503 - L1MC4 LINE L1 -365 7677 7493 2289 79 0 10 chr6 42097786 42098090 -140317152 + AluSg1 SINE Alu 1 301 -8 1132 111 72 0 chr6 42098207 42098387 -140316855 + MER30 DNA MER1_type 1 193 -37 234 62 0 0 chr6 42098568 42098600 -140316642 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 400 242 152 0 chr6 42098603 42098702 -140316540 - FLAM_A SINE Alu -19 114 1 1102 136 24 34 chr6 42098746 42098784 -140316458 + AluJo SINE Alu 84 121 -191 2382 61 3 0 chr6 42098784 42099080 -140316162 - AluSp SINE Alu -16 297 1 1102 136 24 34 chr6 42099080 42099247 -140315995 + AluJo SINE Alu 121 287 -25 1492 188 100 30 chr6 42099306 42099586 -140315656 - MLT1D LTR MaLR 0 505 264 1973 136 7 0 chr6 42099586 42099873 -140315369 - AluJb SINE Alu -15 297 9 1492 188 100 30 chr6 42099873 42099999 -140315243 - MLT1D LTR MaLR -241 264 148 817 205 74 0 chr6 42099886 42100076 -140315166 - MLT2C1 LTR ERVL -193 204 1 * 864 128 83 92 chr6 42100102 42100163 -140315079 + Tigger3(Golem) DNA MER2_type 1 61 -1170 2047 126 0 7 chr6 42100163 42100464 -140314778 + AluSx SINE Alu 1 299 -13 864 128 83 92 chr6 42100464 42100493 -140314749 + Tigger3(Golem) DNA MER2_type 61 89 -1142 2075 121 3 0 chr6 42100493 42100791 -140314451 + AluSq SINE Alu 1 299 -14 864 128 83 92 chr6 42100791 42100935 -140314307 + Tigger3(Golem) DNA MER2_type 89 204 -1027 1816 129 3 46 chr6 42100939 42101264 -140313978 + AluJo SINE Alu 2 312 0 2949 124 56 28 chr6 42101265 42101670 -140313572 + Tigger3(Golem) DNA MER2_type 2515 2938 -91 2177 115 3 0 chr6 42101670 42101974 -140313268 - AluSx SINE Alu -7 305 1 2949 124 56 28 chr6 42101974 42102068 -140313174 + Tigger3(Golem) DNA MER2_type 2938 3028 -1 315 0 0 0 chr6 42102069 42102104 -140313138 + (TG)n Simple_repeat Simple_repeat 2 36 0 2473 169 47 89 chr6 42102105 42102160 -140313082 - L1ME1 LINE L1 -122 6044 5988 1509 100 0 0 chr6 42102160 42102382 -140312860 + AluSq SINE Alu 87 308 0 2473 169 47 89 chr6 42102382 42102945 -140312297 - L1ME1 LINE L1 -178 5988 5451 449 225 11 58 chr6 42103015 42103206 -140312036 - L1MC5 LINE L1 -781 7180 6999 1962 129 7 10 chr6 42103260 42103562 -140311680 - AluSx SINE Alu -11 301 1 1324 165 120 0 chr6 42103567 42103833 -140311409 - AluJb SINE Alu -1 311 14 2092 108 10 0 chr6 42103915 42104211 -140311031 + AluSg SINE Alu 1 299 -11 1969 130 10 0 chr6 42104287 42104601 -140310641 + AluSx SINE Alu 1 312 0 2063 110 3 3 chr6 42104935 42105234 -140310008 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr6 42105431 42105452 -140309790 + AT_rich Low_complexity Low_complexity 1 21 0 2101 104 3 16 chr6 42105671 42105978 -140309264 - AluSg SINE Alu -7 303 1 580 207 76 22 chr6 42106654 42106836 -140308406 + MIR SINE MIR 12 193 -62 204 158 0 0 chr6 42106836 42106874 -140308368 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 197 0 0 chr6 42106878 42106944 -140308298 + GA-rich Low_complexity Low_complexity 1 66 0 2169 96 0 7 chr6 42106976 42107278 -140307964 + AluSx SINE Alu 1 300 -12 2099 138 0 0 chr6 42107288 42107600 -140307642 + AluSx SINE Alu 1 312 0 1637 171 12 40 chr6 42108251 42108572 -140306670 - AluSx SINE Alu 0 312 1 336 215 41 132 chr6 42108607 42108652 -140306590 + MIR SINE MIR 27 74 -188 2332 64 3 0 chr6 42108652 42108948 -140306294 - AluSp SINE Alu -16 297 1 336 215 41 132 chr6 42108948 42109023 -140306219 + MIR SINE MIR 74 136 -126 403 154 0 3 chr6 42109383 42109453 -140305789 + AluJb SINE Alu 1 55 -247 1945 131 7 0 chr6 42109453 42109750 -140305492 + AluSx SINE Alu 1 299 -13 1687 157 0 0 chr6 42109750 42110016 -140305226 + AluJb SINE Alu 44 310 -2 186 191 0 0 chr6 42110113 42110155 -140305087 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 2161 112 0 3 chr6 42110232 42110527 -140304715 + AluSq SINE Alu 2 295 -18 1620 134 7 60 chr6 42110557 42110855 -140304387 + AluJb SINE Alu 1 282 -30 180 0 0 0 chr6 42110859 42110879 -140304363 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2140 66 0 72 chr6 42111211 42111544 -140303698 + AluY SINE Alu 1 309 -2 2348 67 0 10 chr6 42111719 42112032 -140303210 - AluY SINE Alu -1 310 1 1992 105 10 30 chr6 42112069 42112373 -140302869 + AluSx SINE Alu 1 298 -14 234 158 59 50 chr6 42112374 42112475 -140302767 + L1MC5 LINE L1 7586 7687 -274 2194 104 3 0 chr6 42112548 42112846 -140302396 - AluSx SINE Alu -12 300 2 1899 113 0 31 chr6 42112847 42113138 -140302104 - AluSx SINE Alu -30 282 1 899 131 141 106 chr6 42113290 42113332 -140301910 - MER33 DNA MER1_type -2261 324 285 493 215 222 0 chr6 42113332 42113467 -140301775 - FAM SINE Alu -10 165 1 899 131 141 106 chr6 42113467 42113525 -140301717 - MER33 DNA MER1_type -2300 285 231 1699 153 35 0 chr6 42113525 42113812 -140301430 - AluSx SINE Alu -15 297 1 1785 110 96 0 chr6 42113816 42114088 -140301154 - AluSx SINE Alu -14 298 1 899 131 141 106 chr6 42114088 42114112 -140301130 - MER33 DNA MER1_type -2356 229 207 1778 167 0 0 chr6 42114112 42114425 -140300817 - AluJb SINE Alu 0 313 1 899 131 141 106 chr6 42114425 42114604 -140300638 - MER33 DNA MER1_type -2378 207 2 555 283 26 7 chr6 42114605 42114757 -140300485 + LTR33 LTR ERVL 26 180 -341 392 167 167 42 chr6 42114921 42115017 -140300225 + LTR33 LTR ERVL 410 517 -4 2147 83 0 45 chr6 42115067 42115242 -140300000 - AluSx SINE Alu -14 298 142 2056 103 3 0 chr6 42115242 42115532 -140299710 - AluY SINE Alu -20 291 1 2147 83 0 45 chr6 42115532 42115668 -140299574 - AluSx SINE Alu -170 142 1 1849 112 12 0 chr6 42115748 42116032 -140299210 - AluSx SINE Alu 0 309 23 1045 195 51 31 chr6 42116042 42116298 -140298944 - AluJo SINE Alu -14 298 38 2061 133 0 0 chr6 42116316 42116625 -140298617 + AluSc SINE Alu 1 309 0 1610 171 3 32 chr6 42116669 42116985 -140298257 - AluJb SINE Alu -4 308 2 40 49 0 0 chr6 42116985 42117046 -140298196 + AT_rich Low_complexity Low_complexity 1 61 0 1880 123 3 3 chr6 42117049 42117356 -140297886 + AluSx SINE Alu 1 307 0 633 133 0 9 chr6 42117485 42117590 -140297652 + FLAM_C SINE Alu 35 138 -5 1045 102 80 6 chr6 42117700 42117876 -140297366 + MER2 DNA MER2_type 20 208 -137 2240 99 0 0 chr6 42117972 42118275 -140296967 + AluSx SINE Alu 1 303 -9 1889 110 0 22 chr6 42118811 42119084 -140296158 + AluSx SINE Alu 6 272 -40 225 0 0 0 chr6 42119084 42119109 -140296133 + (CAA)n Simple_repeat Simple_repeat 3 27 0 198 0 0 0 chr6 42119371 42119393 -140295849 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1393 172 20 4 chr6 42119427 42119677 -140295565 - AluSq SINE Alu -59 254 1 421 179 167 0 chr6 42119751 42119829 -140295413 + AluJ/FLAM SINE Alu 1 91 -221 847 195 146 4 chr6 42119868 42120094 -140295148 + AluJo SINE Alu 47 304 -8 1575 153 3 14 chr6 42120094 42120388 -140294854 + AluJb SINE Alu 1 291 -21 195 289 105 13 chr6 42120404 42120480 -140294762 - L2 LINE L2 -12 3301 3219 280 293 86 43 chr6 42120519 42120635 -140294607 - MIR SINE MIR -121 141 21 188 103 63 10 chr6 42120757 42120799 -140294443 - MIR SINE MIR -50 158 106 2320 90 0 0 chr6 42120917 42121229 -140294013 + AluSx SINE Alu 1 312 0 1911 65 12 4 chr6 42121309 42121556 -140293686 - AluSq SINE Alu -64 249 1 1649 184 81 28 chr6 42123396 42123793 -140291449 - L1MB5 LINE L1 -58 6116 5699 180 0 0 0 chr6 42123923 42123943 -140291299 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2048 83 3 3 chr6 42123947 42124237 -140291005 - AluSg SINE Alu -20 290 1 1841 130 7 23 chr6 42125112 42125420 -140289822 - AluSx SINE Alu -9 303 1 36 40 0 0 chr6 42125846 42125896 -140289346 + AT_rich Low_complexity Low_complexity 1 50 0 661 139 0 0 chr6 42125907 42126008 -140289234 - AluJ/FLAM SINE Alu -210 102 2 1870 151 0 0 chr6 42126405 42126696 -140288546 - AluSg SINE Alu -19 291 1 369 62 0 0 chr6 42128993 42129041 -140286201 + (T)n Simple_repeat Simple_repeat 1 48 0 1349 204 36 4 chr6 42129379 42129653 -140285589 - AluJo SINE Alu -24 288 6 207 69 0 0 chr6 42129945 42129974 -140285268 + (T)n Simple_repeat Simple_repeat 1 29 0 632 202 0 47 chr6 42132337 42132466 -140282776 + AluSq/x SINE Alu 2 124 -189 1796 159 10 0 chr6 42133222 42133518 -140281724 + AluSq SINE Alu 1 299 -14 1220 168 47 0 chr6 42134073 42134287 -140280955 - AluJo SINE Alu -80 232 11 2393 84 0 0 chr6 42134552 42134849 -140280393 - AluSx SINE Alu -15 297 1 2180 108 3 13 chr6 42135232 42135538 -140279704 - AluSc SINE Alu -6 303 1 465 177 150 35 chr6 42135544 42135657 -140279585 - AluJb SINE Alu -185 127 2 2052 108 38 0 chr6 42136181 42136469 -140278773 + AluSp SINE Alu 1 299 -14 1844 141 22 4 chr6 42136709 42136985 -140278257 + AluJb SINE Alu 29 309 -3 181 385 58 0 chr6 42137190 42137294 -140277948 - MIR SINE MIR -96 166 57 270 243 214 19 chr6 42137325 42137428 -140277814 - MIR3 SINE MIR -25 183 61 605 281 101 17 chr6 42137470 42137708 -140277534 + MIR SINE MIR 2 259 -3 204 310 169 28 chr6 42138013 42138155 -140277087 + MIR SINE MIR 11 172 -90 281 51 51 0 chr6 42138175 42138214 -140277028 - MER5B DNA MER1_type -13 165 125 1794 113 0 51 chr6 42138225 42138500 -140276742 + AluSx SINE Alu 1 261 -51 954 226 108 24 chr6 42138571 42138951 -140276291 + LTR56 LTR ERV1 9 420 -25 256 220 192 56 chr6 42139423 42139637 -140275605 - MER20B DNA MER1_type -1 782 540 2124 144 0 7 chr6 42139641 42139946 -140275296 + AluSx SINE Alu 1 303 -9 7792 109 50 20 chr6 42139967 42140183 -140275059 + Tigger1 DNA MER2_type 863 1071 -1347 1276 170 99 42 chr6 42140183 42140466 -140274776 - AluJb SINE Alu -3 299 1 7792 109 50 20 chr6 42140466 42140628 -140274614 + Tigger1 DNA MER2_type 1071 1227 -1191 2387 87 3 7 chr6 42140628 42140938 -140274304 - AluSx SINE Alu -3 309 1 7792 109 50 20 chr6 42140938 42141864 -140273378 + Tigger1 DNA MER2_type 1227 2207 -211 1386 158 19 0 chr6 42141864 42141944 -140273298 - AluJo SINE Alu -99 213 136 2460 93 0 0 chr6 42141944 42142245 -140272997 - AluSx SINE Alu -11 301 1 1386 158 19 0 chr6 42142245 42142373 -140272869 - AluJo SINE Alu -176 136 1 601 120 232 0 chr6 42142375 42142517 -140272725 + Tigger1 DNA MER2_type 2243 2417 -1 2141 111 14 14 chr6 42142571 42142868 -140272374 - AluSx SINE Alu -15 297 1 232 242 199 43 chr6 42142920 42143038 -140272204 - MER20B DNA MER1_type -591 192 41 1809 140 58 14 chr6 42143038 42143331 -140271911 + AluJo SINE Alu 1 306 -6 232 242 199 43 chr6 42143331 42143373 -140271869 - MER20B DNA MER1_type -742 41 7 250 207 164 86 chr6 42143469 42143609 -140271633 - MIR SINE MIR 0 262 112 259 136 23 0 chr6 42143794 42143838 -140271404 - MIR3 SINE MIR -6 202 158 2271 114 3 9 chr6 42143855 42144034 -140271208 - AluSq SINE Alu 0 313 135 2584 71 0 3 chr6 42144034 42144345 -140270897 - AluY SINE Alu -1 310 1 2271 114 3 9 chr6 42144345 42144480 -140270762 - AluSq SINE Alu -178 135 1 244 335 89 6 chr6 42144887 42145045 -140270197 - MIR3 SINE MIR -20 188 18 2072 107 43 0 chr6 42145784 42146064 -140269178 - AluSx SINE Alu -19 293 2 2393 76 3 7 chr6 42146093 42146395 -140268847 + AluY SINE Alu 1 301 -10 351 300 36 21 chr6 42146677 42146817 -140268425 + MIR SINE MIR 103 244 -18 353 270 127 24 chr6 42147043 42147169 -140268073 - MIR3 SINE MIR -40 168 30 2130 115 3 7 chr6 42147466 42147753 -140267489 - AluSx SINE Alu -13 299 14 255 200 18 0 chr6 42147932 42147987 -140267255 + AluJb SINE Alu 81 136 -166 2020 134 3 26 chr6 42147988 42148133 -140267109 + AluJb SINE Alu 1 148 -164 2471 92 0 0 chr6 42148133 42148439 -140266803 + AluSg SINE Alu 1 306 -4 2020 134 3 26 chr6 42148439 42148599 -140266643 + AluJb SINE Alu 148 299 -13 249 250 18 0 chr6 42149038 42149094 -140266148 + MIR3 SINE MIR 152 208 0 293 251 156 35 chr6 42149288 42149439 -140265803 - MIR3 SINE MIR -54 154 17 365 299 62 26 chr6 42149739 42149932 -140265310 + MIR SINE MIR 33 235 -27 * 443 201 75 119 chr6 42149905 42149983 -140265259 - MIR SINE MIR -4 258 189 2353 95 0 0 chr6 42149983 42150279 -140264963 - AluY SINE Alu -15 296 1 443 201 75 119 chr6 42150279 42150359 -140264883 - MIR SINE MIR -73 189 107 704 134 50 0 chr6 42150375 42150494 -140264748 + Tigger1 DNA MER2_type 1634 1758 -660 302 325 12 6 chr6 42151932 42152101 -140263141 + (TG)n Simple_repeat Simple_repeat 1 170 0 432 302 69 11 chr6 42152352 42152541 -140262701 + MIR SINE MIR 27 226 -36 281 330 0 0 chr6 42152707 42152801 -140262441 + (CA)n Simple_repeat Simple_repeat 1 94 0 207 284 219 7 chr6 42153671 42153826 -140261416 - L2 LINE L2 -220 3052 2865 312 243 100 50 chr6 42153841 42153981 -140261261 - L2 LINE L2 -8 3305 3159 2291 80 0 7 chr6 42154004 42154324 -140260918 - AluY SINE Alu 0 318 1 471 250 71 0 chr6 42154324 42154436 -140260806 - MIR SINE MIR -36 226 107 2160 119 10 0 chr6 42155043 42155336 -140259906 - AluSx SINE Alu -16 296 1 2344 110 0 19 chr6 42156220 42156355 -140258887 + AluSx SINE Alu 1 137 -175 2288 110 0 0 chr6 42156355 42156677 -140258565 + AluSg SINE Alu 1 322 0 2344 110 0 19 chr6 42156677 42156858 -140258384 + AluSx SINE Alu 137 312 0 1432 103 0 0 chr6 42156867 42157051 -140258191 + AluSg/x SINE Alu 120 303 -7 1585 179 3 20 chr6 42157804 42158101 -140257141 + AluJo SINE Alu 5 296 -16 2051 125 4 0 chr6 42158109 42158390 -140256852 + AluSg SINE Alu 10 291 -19 180 97 0 0 chr6 42158396 42158427 -140256815 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 469 204 152 8 chr6 42158522 42158654 -140256588 + LTR16C LTR ERVL 339 489 -2 277 243 140 9 chr6 42158662 42158769 -140256473 - MIR SINE MIR -15 247 127 1981 115 66 0 chr6 42158823 42159110 -140256132 - AluSx SINE Alu -5 307 2 317 247 59 53 chr6 42159121 42159291 -140255951 - L1ME LINE L1 -452 5669 5499 2355 58 10 3 chr6 42160003 42160294 -140254948 - AluY SINE Alu -18 293 1 371 183 70 92 chr6 42160297 42160439 -140254803 - MIR SINE MIR -46 216 78 224 232 18 36 chr6 42160598 42160654 -140254588 - MIR SINE MIR -190 72 18 * 832 201 73 0 chr6 42160648 42160812 -140254430 + MER5A DNA MER1_type 8 183 -6 2438 85 0 0 chr6 42160853 42161147 -140254095 - AluSc SINE Alu -15 294 1 2271 98 14 0 chr6 42161163 42161458 -140253784 - AluSx SINE Alu -13 299 1 553 203 116 22 chr6 42161461 42161599 -140253643 + MER5B DNA MER1_type 8 158 -20 1959 157 6 10 chr6 42161769 42162082 -140253160 - AluJo SINE Alu 0 312 1 989 183 136 53 chr6 42162419 42162462 -140252780 - LTR50 LTR ERVL -2 793 755 1844 107 0 81 chr6 42162462 42162802 -140252440 - AluJb SINE Alu 0 315 1 989 183 136 53 chr6 42162802 42162969 -140252273 - LTR50 LTR ERVL -40 755 603 332 0 45 0 chr6 42162969 42163013 -140252229 + L1PA6 LINE L1 6107 6152 -2 989 183 136 53 chr6 42163013 42163123 -140252119 - LTR50 LTR ERVL -192 603 444 248 232 101 14 chr6 42163146 42163215 -140252027 - LTR50 LTR ERVL -474 321 247 691 230 176 20 chr6 42163432 42163636 -140251606 - MIR SINE MIR -7 255 20 1902 107 0 0 chr6 42163778 42164031 -140251211 - AluSx SINE Alu -16 296 44 450 355 28 67 chr6 42164131 42164458 -140250784 - L2 LINE L2 -61 3211 2898 650 139 0 35 chr6 42165990 42166104 -140249138 - MER63 DNA MER1_type -5 1055 946 691 171 18 47 chr6 42166104 42166274 -140248968 - MER106B DNA MER1_type 0 1059 895 2183 141 0 6 chr6 42166281 42166593 -140248649 - AluJb SINE Alu -1 311 2 596 215 7 0 chr6 42166633 42166768 -140248474 - MER63 DNA MER1_type -87 973 838 305 196 0 0 chr6 42166770 42166826 -140248416 - MER63 DNA MER1_type -874 56 1 910 28 0 0 chr6 42167581 42167687 -140247555 - U1 snRNA snRNA -59 106 1 1926 115 89 0 chr6 42167834 42168103 -140247139 - AluSx SINE Alu -19 293 1 2210 108 3 38 chr6 42168110 42168426 -140246816 - AluSq SINE Alu -6 307 3 2363 96 0 13 chr6 42168447 42168760 -140246482 - AluSc SINE Alu 0 309 1 2169 118 3 0 chr6 42168823 42169111 -140246131 + AluSq SINE Alu 1 289 -24 2019 157 15 48 chr6 42169202 42169596 -140245646 + MLT1B LTR MaLR 10 390 0 894 102 0 0 chr6 42170102 42170220 -140245022 - FLAM_C SINE Alu -15 118 1 2315 108 0 0 chr6 42170328 42170623 -140244619 + AluSc SINE Alu 1 295 -14 242 264 97 0 chr6 42170836 42170908 -140244334 + MIR SINE MIR 108 186 -76 571 184 71 35 chr6 42171753 42171894 -140243348 + MIR3 SINE MIR 15 160 -48 1941 136 36 0 chr6 42172444 42172723 -140242519 - AluSg SINE Alu -21 289 1 1923 141 0 0 chr6 42172816 42173078 -140242164 + AluJb SINE Alu 16 277 -35 241 271 86 0 chr6 42173317 42173387 -140241855 + L2 LINE L2 3167 3242 -30 640 245 55 12 chr6 42173542 42173705 -140241537 + L1MC4a LINE L1 5568 5737 -2071 1234 177 24 10 chr6 42173708 42173917 -140241325 + AluJo SINE Alu 87 298 -14 698 213 0 0 chr6 42174093 42174215 -140241027 + FLAM_A SINE Alu 1 122 -11 412 284 105 81 chr6 42174218 42174283 -140240959 + L1MC4a LINE L1 5875 5937 -1871 2377 98 0 0 chr6 42174283 42174580 -140240662 + AluSg SINE Alu 1 297 -13 412 284 105 81 chr6 42174580 42174810 -140240432 + L1MC4a LINE L1 5937 6177 -1631 2273 100 0 7 chr6 42175077 42175377 -140239865 - AluSg SINE Alu -12 298 1 296 219 27 0 chr6 42175408 42175481 -140239761 + L1ME4a LINE L1 5967 6041 -80 224 281 0 0 chr6 42175515 42175572 -140239670 + GA-rich Low_complexity Low_complexity 1 57 0 546 225 6 125 chr6 42176243 42176438 -140238804 + MIR3 SINE MIR 40 210 -24 2177 101 13 33 chr6 42176440 42176746 -140238496 - AluSx SINE Alu -12 300 1 1863 124 0 0 chr6 42176771 42177028 -140238214 + AluSq SINE Alu 45 301 -12 2339 144 5 23 chr6 42177040 42177508 -140237734 + L1MB5 LINE L1 5752 6181 -2 2043 80 91 21 chr6 42178487 42178774 -140236468 + AluSx SINE Alu 2 308 -4 239 299 69 23 chr6 42178782 42178869 -140236373 - MER5A DNA MER1_type -49 140 50 755 267 74 9 chr6 42179246 42179463 -140235779 - MIR SINE MIR 0 262 32 415 133 33 0 chr6 42179499 42179559 -140235683 - AluJ/FLAM SINE Alu -249 63 2 585 138 0 0 chr6 42179597 42179677 -140235565 + AluS SINE Alu 2 81 -232 531 259 31 43 chr6 42179727 42179889 -140235353 - MIR3 SINE MIR -38 170 11 1910 153 14 0 chr6 42180171 42180465 -140234777 - AluSx SINE Alu -14 298 1 340 265 53 80 chr6 42180598 42180699 -140234543 - MIR SINE MIR -7 255 158 2274 118 0 0 chr6 42180699 42180995 -140234247 - AluSx SINE Alu -16 296 1 340 265 53 80 chr6 42180995 42181044 -140234198 - MIR SINE MIR -104 158 109 2415 98 0 0 chr6 42181093 42181390 -140233852 - AluSg SINE Alu -13 297 1 310 278 47 89 chr6 42181945 42182136 -140233106 + L1MC4 LINE L1 6521 6703 -1339 302 365 47 0 chr6 42182090 42182197 -140233045 - L1MC4 LINE L1 -1339 6703 6592 * 1180 159 5 0 chr6 42182288 42182477 -140232765 - AluSg/x SINE Alu -2 310 121 2117 113 34 3 chr6 42182633 42182925 -140232317 - AluSq SINE Alu -12 301 1 953 239 129 43 chr6 42182965 42183338 -140231904 - MLT1G1 LTR MaLR -6 589 185 327 222 111 0 chr6 42183368 42183449 -140231793 - MLT1G1 LTR MaLR -504 91 2 2307 96 3 0 chr6 42183939 42184231 -140231011 + AluSx SINE Alu 3 295 -17 408 374 30 17 chr6 42184231 42184461 -140230781 - HAL1 LINE L1 -958 1549 1317 1249 271 46 92 chr6 42184482 42184839 -140230403 + MER21B LTR ERV1 39 348 -515 2449 84 7 7 chr6 42184839 42185149 -140230093 + AluSx SINE Alu 1 310 -2 1249 271 46 92 chr6 42185149 42185508 -140229734 + MER21B LTR ERV1 348 722 -141 696 272 80 10 chr6 42185945 42186184 -140229058 + LTR16A1 LTR ERVL 195 457 0 552 289 118 27 chr6 42186211 42186543 -140228699 + MLT1I LTR MaLR 61 390 -19 1138 218 68 0 chr6 42186560 42186794 -140228448 + MIR SINE MIR 3 252 -10 1684 181 33 41 chr6 42186888 42187252 -140227990 + MLT1A1 LTR MaLR 5 365 0 406 187 36 25 chr6 42187417 42187551 -140227691 + MER63 DNA MER1_type 700 1058 -2 380 177 13 0 chr6 42187831 42187910 -140227332 + MER116 DNA Mariner 1 80 0 2273 83 10 3 chr6 42188460 42188750 -140226492 - AluSq SINE Alu -21 292 1 541 221 9 0 chr6 42189926 42190039 -140225203 - MER81 DNA DNA 0 114 1 2237 116 0 0 chr6 42190103 42190397 -140224845 + AluSx SINE Alu 2 295 -17 195 185 31 46 chr6 42190624 42190689 -140224553 - MIR SINE MIR -50 212 149 229 261 109 0 chr6 42191567 42191659 -140223583 + L1ME4a LINE L1 5830 5931 -190 266 240 104 56 chr6 42191664 42191789 -140223453 + L1ME4a LINE L1 5980 6110 -11 856 240 120 9 chr6 42191931 42192164 -140223078 + MIR SINE MIR 4 262 0 715 212 47 42 chr6 42192169 42192381 -140222861 + MIR SINE MIR 12 224 -38 2346 106 0 0 chr6 42192418 42192720 -140222522 - AluSx SINE Alu -10 302 1 243 239 42 0 chr6 42193049 42193120 -140222122 + MER69 DNA AcHobo 2444 2517 -9 233 229 0 0 chr6 42193273 42193321 -140221921 + Tigger5 DNA MER2_type 2 49 -2274 509 42 14 0 chr6 42193340 42193412 -140221830 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 328 41 0 61 chr6 42193414 42193463 -140221779 + MLT2B1 LTR ERVL 475 520 0 2301 118 0 7 chr6 42193656 42193960 -140221282 + AluSx SINE Alu 1 302 -10 335 256 30 0 chr6 42194018 42194174 -140221068 + L1MC4a LINE L1 5709 5903 -1905 750 229 0 0 chr6 42194216 42194373 -140220869 + MER46C DNA MER2_type 2 158 -180 316 222 189 0 chr6 42194395 42194485 -140220757 + MER81 DNA DNA 7 113 -1 509 212 26 0 chr6 42194488 42194601 -140220641 + MER46C DNA MER2_type 212 327 -11 297 205 128 17 chr6 42194658 42194775 -140220467 + L1MC4a LINE L1 6042 6171 -1637 2094 102 39 3 chr6 42195959 42196243 -140218999 - AluJb SINE Alu -6 306 13 252 318 35 0 chr6 42196325 42196410 -140218832 + MIR SINE MIR 80 167 -95 767 285 88 13 chr6 42196698 42197003 -140218239 + MLT1J2 LTR MaLR 113 440 -10 433 275 51 0 chr6 42197985 42198123 -140217119 + L1ME LINE L1 5626 5770 -392 1698 185 23 0 chr6 42198148 42198450 -140216792 + AluJb SINE Alu 1 309 -3 968 275 142 32 chr6 42198469 42198966 -140216276 - MLT1G LTR MaLR 0 590 40 791 217 49 107 chr6 42199031 42199376 -140215866 - MLT1I LTR MaLR -14 395 71 201 147 0 0 chr6 42199577 42199611 -140215631 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 840 282 34 52 chr6 42200147 42200534 -140214708 + LTR16A LTR ERVL 65 457 0 218 250 97 0 chr6 42200605 42200677 -140214565 - MIR SINE MIR -1 261 183 1432 113 5 0 chr6 42200710 42200905 -140214337 - AluSp SINE Alu 0 313 118 343 61 0 0 chr6 42200908 42200957 -140214285 + HY3 scRNA scRNA 52 100 -1 29 0 0 0 chr6 42200957 42200986 -140214256 + AT_rich Low_complexity Low_complexity 1 29 0 1984 120 7 11 chr6 42200991 42201309 -140213933 + AluSx SINE Alu 1 317 0 2094 139 0 35 chr6 42201309 42201625 -140213617 + AluSx SINE Alu 1 305 -7 995 121 14 0 chr6 42201627 42201767 -140213475 + AluSp SINE Alu 1 142 -171 2275 96 0 7 chr6 42203460 42203752 -140211490 - AluSg SINE Alu -20 290 1 952 105 24 0 chr6 42203874 42203998 -140211244 + AluSg/x SINE Alu 121 247 -65 217 26 53 26 chr6 42204012 42204050 -140211192 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 185 265 41 0 chr6 42204808 42204857 -140210385 + MIR SINE MIR 203 253 -9 306 303 76 8 chr6 42205716 42205835 -140209407 + MIR3 SINE MIR 6 132 -76 224 245 0 19 chr6 42206080 42206133 -140209109 + MIR3 SINE MIR 103 154 -54 375 113 0 0 chr6 42208304 42208366 -140206876 + (TG)n Simple_repeat Simple_repeat 2 63 0 223 290 93 47 chr6 42209170 42209277 -140205965 - MER5B DNA MER1_type -33 145 34 1267 21 0 48 chr6 42209279 42209467 -140205775 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1280 158 90 86 chr6 42209473 42209600 -140205642 - AluJo SINE Alu -32 280 155 2541 58 3 10 chr6 42209600 42209908 -140205334 - AluY SINE Alu -5 306 1 1280 158 90 86 chr6 42209908 42210059 -140205183 - AluJo SINE Alu -157 155 1 662 232 111 14 chr6 42210133 42210340 -140204902 + MIR SINE MIR 23 249 -13 861 233 65 25 chr6 42211130 42211375 -140203867 - MIR SINE MIR -3 259 5 425 262 40 32 chr6 42211475 42211601 -140203641 - MIR SINE MIR -117 145 19 289 266 21 21 chr6 42212634 42212728 -140202514 - MIR3 SINE MIR -49 159 66 365 273 39 93 chr6 42212734 42212853 -140202389 - MIR SINE MIR -5 257 155 1956 143 0 33 chr6 42212853 42213154 -140202088 - AluJo SINE Alu -21 291 1 365 273 39 93 chr6 42213154 42213248 -140201994 - MIR SINE MIR -107 155 57 241 191 63 0 chr6 42213251 42213314 -140201928 - MIR SINE MIR -1 261 195 518 269 143 16 chr6 42213334 42213516 -140201726 + MER3 DNA MER1_type 1 205 -4 376 291 47 31 chr6 42215215 42215342 -140199900 + L2 LINE L2 3138 3266 -6 25 0 0 0 chr6 42215416 42215441 -140199801 + AT_rich Low_complexity Low_complexity 1 25 0 1285 232 92 33 chr6 42215595 42215747 -140199495 + L1ME3 LINE L1 5393 5535 -627 1893 143 30 20 chr6 42215747 42216048 -140199194 + AluSx SINE Alu 1 304 -8 1285 232 92 33 chr6 42216048 42216177 -140199065 + L1ME3 LINE L1 5535 5655 -507 1831 143 0 54 chr6 42216177 42216491 -140198751 + AluJo SINE Alu 8 304 -8 1285 232 92 33 chr6 42216491 42216631 -140198611 + L1ME3 LINE L1 5655 5840 -322 417 149 92 0 chr6 42216634 42216721 -140198521 - MLT1G1 LTR MaLR -2 593 499 634 331 69 22 chr6 42216721 42217038 -140198204 - HERVL LTR ERVL -2345 3309 2978 1252 37 0 12 chr6 42217055 42217219 -140198023 + L1PA6 LINE L1 5993 6154 0 268 319 25 25 chr6 42217226 42217345 -140197897 - HERVL LTR ERVL -2541 2944 2826 1348 330 73 30 chr6 42217350 42218494 -140196748 - HERVL LTR ERVL -3133 2631 1302 1117 353 76 45 chr6 42218540 42218941 -140196301 - HERVL LTR ERVL -3827 1169 782 800 212 54 59 chr6 42218941 42219163 -140196079 + MER58A DNA MER1_type 1 221 -3 1117 353 76 45 chr6 42219163 42219874 -140195368 - HERVL LTR ERVL -4214 782 22 669 267 44 10 chr6 42219916 42220122 -140195120 - LTR16C LTR ERVL -31 460 248 769 279 175 12 chr6 42221283 42221956 -140193286 + L2 LINE L2 2504 3309 -4 2011 146 20 3 chr6 42221957 42222259 -140192983 + AluJb SINE Alu 1 307 -5 28 29 0 0 chr6 42222340 42222375 -140192867 + AT_rich Low_complexity Low_complexity 1 35 0 550 182 27 27 chr6 42222376 42222524 -140192718 - L1MC4 LINE L1 0 8042 7895 2137 134 0 3 chr6 42222720 42223018 -140192224 - AluJb SINE Alu -15 297 1 1828 161 64 22 chr6 42223018 42223378 -140191864 - THE1C LTR MaLR 0 375 1 1501 248 49 97 chr6 42223419 42224133 -140191109 - L1MC4a LINE L1 -1874 5934 5255 373 273 63 98 chr6 42224143 42224348 -140190894 - L1MC4a LINE L1 -907 5239 5042 380 141 0 14 chr6 42224348 42224419 -140190823 + (TTC)n Simple_repeat Simple_repeat 2 71 0 871 144 0 0 chr6 42224424 42224556 -140190686 - FLAM_C SINE Alu -1 132 1 1066 69 29 6 chr6 42224574 42224593 -140190649 + (TTTC)n Simple_repeat Simple_repeat 1 197 0 1066 69 29 6 chr6 42224593 42224767 -140190475 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 435 245 37 43 chr6 42224894 42225057 -140190185 - L1MC5 LINE L1 -55 7906 7745 424 289 53 79 chr6 42225053 42225371 -140189871 - L1MC4a LINE L1 -1110 5036 4727 * 263 267 43 9 chr6 42225537 42225644 -140189598 + MIR SINE MIR 16 127 -81 315 291 111 0 chr6 42226091 42226208 -140189034 + MIR SINE MIR 20 149 -59 297 239 81 41 chr6 42227679 42227799 -140187443 + MIR SINE MIR 38 162 -63 624 269 26 43 chr6 42227926 42228160 -140187082 - L2 LINE L2 -2 3311 3082 529 260 98 12 chr6 42228170 42228343 -140186899 - MIR SINE MIR -44 218 31 2078 129 30 0 chr6 42228443 42228746 -140186496 - AluJo SINE Alu 0 312 1 1830 183 7 0 chr6 42229133 42229422 -140185820 - AluSx SINE Alu -21 291 1 227 266 59 101 chr6 42229590 42229759 -140185483 + L2 LINE L2 3014 3175 -97 767 266 23 0 chr6 42229809 42229982 -140185260 + MER91A DNA MER1_type 20 196 0 211 208 21 0 chr6 42229982 42230029 -140185213 + L2 LINE L2 3214 3261 -11 469 270 201 0 chr6 42230082 42230256 -140184986 + MER63A DNA MER1_type 2 210 0 417 39 0 0 chr6 42230303 42230354 -140184888 + (GA)n Simple_repeat Simple_repeat 2 52 0 1546 217 100 0 chr6 42231012 42231372 -140183870 - MSTD LTR MaLR 0 396 1 306 213 121 50 chr6 42231935 42232199 -140183043 - L2 LINE L2 -256 3057 2721 2294 98 37 3 chr6 42232852 42233148 -140182094 + AluSq SINE Alu 1 306 -7 433 200 104 16 chr6 42233148 42233273 -140181969 - LTR37B LTR ERV1 -90 378 243 288 77 0 0 chr6 42233397 42233436 -140181806 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 1973 89 0 4 chr6 42233450 42233697 -140181545 - AluSq SINE Alu -67 246 1 1759 203 0 0 chr6 42233916 42234212 -140181030 - AluJo SINE Alu -14 298 3 464 267 34 45 chr6 42234216 42234250 -140180992 - MER31-int LTR ERV1 -831 4105 4072 563 211 9 0 chr6 42234250 42234359 -140180883 + MER81 DNA DNA 3 112 -2 464 267 34 45 chr6 42234359 42234743 -140180499 - MER31-int LTR ERV1 -864 4072 3657 1389 128 0 37 chr6 42234745 42234963 -140180279 - AluJb SINE Alu -16 296 87 403 271 32 95 chr6 42234967 42235052 -140180190 - MER31-int LTR ERV1 -1271 3665 3576 2023 98 0 119 chr6 42235052 42235388 -140179854 + AluSx SINE Alu 1 296 -16 403 271 32 95 chr6 42235388 42235586 -140179656 - MER31-int LTR ERV1 -1360 3576 3400 1879 144 7 11 chr6 42235963 42236248 -140178994 + AluJb SINE Alu 21 304 -8 340 296 0 66 chr6 42236248 42236400 -140178842 - MER31-int LTR ERV1 -1871 3065 2924 23 33 0 0 chr6 42236596 42236626 -140178616 + AT_rich Low_complexity Low_complexity 1 30 0 2140 98 9 22 chr6 42236950 42237265 -140177977 - AluSq SINE Alu -2 311 1 1984 128 0 3 chr6 42237581 42237871 -140177371 - AluSx SINE Alu -23 289 1 2782 167 18 12 chr6 42238043 42238535 -140176707 - L1MB3 LINE L1 -11 6172 5678 680 101 0 46 chr6 42238547 42238656 -140176586 - AluSg/x SINE Alu -2 307 204 1995 114 0 18 chr6 42238656 42238936 -140176306 - AluSx SINE Alu -35 277 3 253 309 0 36 chr6 42238993 42239187 -140176055 - MER31-int LTR ERV1 -3050 1886 1700 1194 119 0 0 chr6 42239773 42239933 -140175309 + AluSg/x SINE Alu 139 298 -14 1965 121 0 0 chr6 42240035 42240300 -140174942 + AluSq SINE Alu 1 265 -48 2236 99 0 0 chr6 42240385 42240679 -140174563 - AluSx SINE Alu -18 294 1 2223 112 0 0 chr6 42241207 42241510 -140173732 - AluSq SINE Alu -10 303 1 640 284 90 32 chr6 42242845 42243190 -140172052 + L2 LINE L2 2870 3234 -79 325 284 52 30 chr6 42243259 42243393 -140171849 + MIR SINE MIR 83 219 -43 315 328 75 0 chr6 42243742 42243876 -140171366 + MIR SINE MIR 13 156 -106 2487 78 0 0 chr6 42244202 42244511 -140170731 + AluSx SINE Alu 1 309 -3 385 312 81 45 chr6 42244814 42245035 -140170207 - MIR SINE MIR -6 256 28 208 279 13 25 chr6 42245098 42245177 -140170065 - L2 LINE L2 -213 3059 2982 449 267 67 0 chr6 42246640 42246775 -140168467 + MIR SINE MIR 98 241 -21 1485 70 57 70 chr6 42246926 42247170 -140168072 - AluY SINE Alu -17 294 54 1040 255 121 31 chr6 42247456 42247971 -140167271 - L2 LINE L2 0 3313 2768 353 271 62 31 chr6 42248661 42248790 -140166452 - MIR SINE MIR -58 204 72 255 61 0 0 chr6 42248819 42248852 -140166390 + (CA)n Simple_repeat Simple_repeat 2 34 0 256 317 111 6 chr6 42248903 42249083 -140166159 - L2 LINE L2 -185 3087 2889 823 273 51 0 chr6 42251202 42251418 -140163824 + MIR SINE MIR 35 261 -1 2405 82 0 0 chr6 42251568 42251874 -140163368 + AluY SINE Alu 1 306 -5 238 194 134 15 chr6 42252014 42252081 -140163161 + MER5A DNA MER1_type 5 79 -110 1901 130 39 0 chr6 42252145 42252471 -140162771 - AluSx SINE Alu 0 312 1 528 16 0 0 chr6 42252652 42252713 -140162529 + (CCAA)n Simple_repeat Simple_repeat 2 62 0 242 175 0 63 chr6 42253017 42253080 -140162162 - MIR SINE MIR -114 148 90 1049 113 0 31 chr6 42253191 42253350 -140161892 - AluSq SINE Alu -19 294 141 416 297 38 12 chr6 42253364 42253535 -140161707 - MIR SINE MIR -65 143 16 198 146 42 21 chr6 42253665 42253713 -140161529 - L2 LINE L2 -196 3076 3028 2170 109 3 0 chr6 42254263 42254556 -140160686 - AluSg SINE Alu -15 295 2 689 305 42 64 chr6 42254564 42254817 -140160425 + L1MC4a LINE L1 5592 5849 -1959 2110 134 0 0 chr6 42254817 42255115 -140160127 - AluSx SINE Alu -14 298 1 689 305 42 64 chr6 42255115 42255454 -140159788 + L1MC4a LINE L1 5849 6171 -1637 373 295 189 40 chr6 42256169 42256396 -140158846 + MIR SINE MIR 2 262 0 185 272 29 58 chr6 42256486 42256589 -140158653 - L2 LINE L2 -223 3049 2950 226 272 123 26 chr6 42257315 42257429 -140157813 - L1ME4a LINE L1 -32 6089 5965 2392 96 0 0 chr6 42257485 42257797 -140157445 - AluSx SINE Alu 0 312 1 229 197 13 53 chr6 42257802 42257878 -140157364 + L1ME4a LINE L1 5598 5670 -451 281 274 154 6 chr6 42257953 42258128 -140157114 + L1ME4a LINE L1 5706 5906 -215 406 130 65 26 chr6 42258130 42258207 -140157035 + MER116 DNA Mariner 1 80 0 23 33 0 0 chr6 42258773 42258803 -140156439 + GC_rich Low_complexity Low_complexity 1 30 0 311 275 109 27 chr6 42258928 42259067 -140156175 + MIR SINE MIR 19 164 -61 342 139 0 0 chr6 42259155 42259227 -140156015 + (CA)n Simple_repeat Simple_repeat 2 73 0 274 281 268 13 chr6 42259231 42259462 -140155780 + L2 LINE L2 3022 3311 -2 369 293 197 13 chr6 42259529 42259833 -140155409 + L2 LINE L2 2883 3242 -30 295 226 49 79 chr6 42260359 42260523 -140154719 + L1ME4a LINE L1 5963 6121 0 1562 195 45 0 chr6 42261204 42261491 -140153751 - AluJb SINE Alu -12 300 1 292 366 31 31 chr6 42261694 42261855 -140153387 + L3 LINE CR1 1409 1569 -8 2184 81 3 0 chr6 42261892 42262204 -140153038 - AluY SINE Alu 0 313 1 558 0 0 0 chr6 42262328 42262390 -140152852 + (GA)n Simple_repeat Simple_repeat 2 63 0 695 294 80 0 chr6 42263101 42263302 -140151940 - MIR SINE MIR 0 262 46 184 328 179 0 chr6 42263817 42263884 -140151358 + L2 LINE L2 3186 3264 -8 698 204 99 0 chr6 42264128 42264290 -140150952 + MER5B DNA MER1_type 1 178 0 204 231 0 0 chr6 42264401 42264440 -140150802 + (TATG)n Simple_repeat Simple_repeat 2 40 0 282 192 0 0 chr6 42264573 42264625 -140150617 - MIR SINE MIR -122 140 89 816 149 90 0 chr6 42264625 42264784 -140150458 + AluSg/x SINE Alu 137 307 0 221 245 0 0 chr6 42264784 42264833 -140150409 - MIR SINE MIR -167 95 47 378 336 16 0 chr6 42266100 42266225 -140149017 - MIR3 SINE MIR -24 184 58 649 239 117 41 chr6 42266268 42266465 -140148777 + MIR SINE MIR 51 262 0 403 271 31 0 chr6 42267060 42267189 -140148053 + MER103 DNA DNA 17 149 -17 1297 238 85 36 chr6 42268097 42268672 -140146570 + L2 LINE L2 2675 3278 -35 526 286 25 12 chr6 42269251 42269412 -140145830 - MIR3 SINE MIR -15 193 31 201 148 49 0 chr6 42271880 42271931 -140143311 - MIR3 SINE MIR -42 166 111 982 235 184 11 chr6 42274695 42275328 -140139914 + L2 LINE L2 2460 3179 -134 639 227 43 0 chr6 42275344 42275485 -140139757 + MIR SINE MIR 40 186 -76 217 250 0 0 chr6 42275525 42275573 -140139669 + MIR3 SINE MIR 159 206 -2 337 269 98 49 chr6 42276350 42276515 -140138727 + MIR SINE MIR 45 216 -46 779 195 30 20 chr6 42276683 42276883 -140138359 + L1MC5 LINE L1 7238 7439 -522 349 234 97 48 chr6 42276896 42276959 -140138283 + MER5A DNA MER1_type 30 88 -101 1783 179 3 0 chr6 42276959 42277250 -140137992 - AluJb SINE Alu -20 292 1 349 234 97 48 chr6 42277250 42277310 -140137932 + MER5A DNA MER1_type 88 159 -30 871 197 52 30 chr6 42277321 42277590 -140137652 + L1MC5 LINE L1 7500 7774 -187 470 142 47 57 chr6 42277597 42277703 -140137539 + FLAM_C SINE Alu 39 143 0 392 224 40 8 chr6 42277728 42277853 -140137389 + L1MC5 LINE L1 7797 7925 -36 417 263 45 8 chr6 42277977 42278110 -140137132 - MER5A DNA MER1_type -3 186 49 534 257 114 14 chr6 42278439 42278649 -140136593 + MLT1J2 LTR MaLR 202 432 -18 2176 87 0 17 chr6 42279522 42279859 -140135383 + AluSx SINE Alu 1 332 0 678 288 6 6 chr6 42280559 42280736 -140134506 - MIR3 SINE MIR -15 193 17 695 269 125 9 chr6 42281177 42281393 -140133849 - MIR SINE MIR -6 256 16 266 253 96 101 chr6 42282111 42282289 -140132953 + MER5B DNA MER1_type 1 177 -1 270 191 16 32 chr6 42282385 42282448 -140132794 + MER5A DNA MER1_type 10 71 -118 201 322 136 59 chr6 42282521 42282639 -140132603 + MER5A DNA MER1_type 63 189 0 588 242 16 0 chr6 42282648 42282772 -140132470 + MIR3 SINE MIR 35 160 -48 373 271 45 32 chr6 42282794 42282949 -140132293 + MER20B DNA MER1_type 7 163 -620 218 219 0 123 chr6 42283114 42283187 -140132055 - MIR SINE MIR -82 180 117 648 192 79 61 chr6 42283353 42283526 -140131716 + L2 LINE L2 2895 3063 -250 189 0 0 0 chr6 42283526 42283547 -140131695 + (TG)n Simple_repeat Simple_repeat 2 22 0 648 192 79 61 chr6 42283547 42283692 -140131550 + L2 LINE L2 3063 3313 0 440 289 44 0 chr6 42283785 42283920 -140131322 + MIR SINE MIR 31 171 -91 844 197 128 0 chr6 42284933 42285121 -140130121 + MER20B DNA MER1_type 1 212 -7 376 300 22 0 chr6 42285408 42285534 -140129708 - MIR SINE MIR -78 130 25 867 208 25 25 chr6 42286104 42286301 -140128941 + MIR SINE MIR 60 256 -6 1485 150 115 0 chr6 42286303 42286563 -140128679 - AluJo SINE Alu -22 290 1 268 264 66 0 chr6 42287486 42287577 -140127665 - L2 LINE L2 -23 3249 3153 1649 146 10 45 chr6 42287939 42288247 -140126995 + AluSx SINE Alu 1 297 -15 340 316 191 16 chr6 42288405 42288851 -140126391 - L2 LINE L2 -555 2759 2236 190 239 22 0 chr6 42288862 42288908 -140126334 - L3 LINE CR1 -160 1417 1371 406 195 0 0 chr6 42289736 42289813 -140125429 - MIR SINE MIR -143 119 43 1726 119 93 4 chr6 42289991 42290260 -140124982 + AluJo SINE Alu 8 300 -12 591 174 0 0 chr6 42290266 42290381 -140124861 + (CA)n Simple_repeat Simple_repeat 2 116 0 374 314 29 36 chr6 42290691 42290831 -140124411 + MIR SINE MIR 32 170 -92 240 284 133 53 chr6 42291279 42291335 -140123907 + L1MC5 LINE L1 7603 7653 -308 2363 89 0 0 chr6 42291335 42291639 -140123603 + AluSx SINE Alu 1 304 -8 240 284 133 53 chr6 42291639 42291846 -140123396 + L1MC5 LINE L1 7653 7887 -74 2051 96 4 4 chr6 42294865 42295170 -140120072 - AluSx SINE Alu 0 305 1 331 230 71 9 chr6 42295384 42295497 -140119745 - MIR SINE MIR -59 149 30 312 263 190 29 chr6 42295714 42295851 -140119391 - MER5B DNA MER1_type -19 159 1 753 215 23 17 chr6 42295869 42296046 -140119196 - MER5B DNA MER1_type 0 178 1 2408 84 10 0 chr6 42296237 42296546 -140118696 - AluSx SINE Alu 0 312 1 249 325 66 30 chr6 42296810 42296976 -140118266 + MIR SINE MIR 8 179 -83 532 219 8 8 chr6 42297092 42297211 -140118031 + L2 LINE L2 3193 3311 -2 322 276 43 74 chr6 42298309 42298472 -140116770 + MIR SINE MIR 94 251 -11 215 364 64 37 chr6 42299237 42299295 -140115947 + L2 LINE L2 3076 3131 -141 984 256 11 30 chr6 42299295 42299561 -140115681 + MIR SINE MIR 1 261 -1 215 364 64 37 chr6 42299561 42299689 -140115553 + L2 LINE L2 3131 3267 -5 1395 129 56 141 chr6 42300850 42301191 -140114051 - AluJo SINE Alu 0 312 1 405 333 8 0 chr6 42301459 42301591 -140113651 + L2 LINE L2 3134 3266 -6 452 291 20 7 chr6 42301643 42301794 -140113448 - MIR SINE MIR -71 191 39 1189 154 0 64 chr6 42301881 42302114 -140113128 + AluJb SINE Alu 85 302 -10 1705 146 10 26 chr6 42302117 42302419 -140112823 + AluJb SINE Alu 2 298 -14 365 429 6 0 chr6 42303124 42303306 -140111936 + L3 LINE CR1 1345 1527 -50 438 235 17 0 chr6 42303323 42303438 -140111804 + MIR SINE MIR 35 151 -57 981 241 54 62 chr6 42303539 42303925 -140111317 + L2 LINE L2 2931 3313 0 324 0 0 0 chr6 42305781 42305817 -140109425 + (CA)n Simple_repeat Simple_repeat 1 36 0 524 290 80 0 chr6 42306075 42306237 -140109005 - MIR3 SINE MIR -15 193 19 777 274 63 8 chr6 42307131 42307375 -140107867 + MIR SINE MIR 1 251 -11 240 286 30 53 chr6 42307545 42307678 -140107564 - MIR SINE MIR -53 209 80 2303 68 7 0 chr6 42307983 42308277 -140106965 - AluY SINE Alu -15 296 1 762 267 37 0 chr6 42308414 42308605 -140106637 + MIR SINE MIR 14 211 -51 207 100 0 0 chr6 42308748 42308778 -140106464 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 569 287 91 35 chr6 42308778 42309008 -140106234 - MIR SINE MIR -11 251 9 468 255 235 0 chr6 42309332 42309532 -140105710 - MIR SINE MIR 0 262 16 640 200 56 0 chr6 42309702 42309858 -140105384 - MER45A DNA AcHobo -5 173 1 377 331 135 0 chr6 42309930 42310078 -140105164 + MIR3 SINE MIR 16 183 -25 2042 100 38 0 chr6 42310537 42310826 -140104416 + AluSq SINE Alu 1 300 -13 477 0 0 0 chr6 42310831 42310884 -140104358 + (CA)n Simple_repeat Simple_repeat 2 54 0 295 346 101 21 chr6 42310896 42311084 -140104158 + MIR SINE MIR 35 237 -25 415 205 0 0 chr6 42311114 42311192 -140104050 + MER116 DNA Mariner 2 79 -1 1554 94 5 0 chr6 42311192 42311405 -140103837 + L1PA13 LINE L1 5950 6163 0 833 188 29 0 chr6 42311453 42311506 -140103736 - MIR SINE MIR -57 205 155 1613 158 0 56 chr6 42311506 42311828 -140103414 - AluJo SINE Alu -8 304 1 833 188 29 0 chr6 42311828 42311944 -140103298 - MIR SINE MIR -107 155 31 1691 148 46 16 chr6 42312674 42312977 -140102265 + AluJb SINE Alu 1 312 0 433 184 48 0 chr6 42313334 42313459 -140101783 + MER96B DNA MER1_type? 44 174 -243 343 239 212 0 chr6 42313459 42313572 -140101670 - MIR SINE MIR -122 140 4 728 192 0 8 chr6 42313602 42313732 -140101510 + FLAM_A SINE Alu 1 129 -4 2263 98 0 9 chr6 42313745 42314060 -140101182 + AluSx SINE Alu 1 312 0 248 210 25 0 chr6 42314074 42314155 -140101087 + L1ME4a LINE L1 6038 6120 -1 520 237 173 19 chr6 42314608 42314965 -140100277 + L1ME4a LINE L1 5680 6120 -1 278 280 64 25 chr6 42315326 42315483 -140099759 + L2 LINE L2 2843 3005 -308 436 259 17 17 chr6 42315486 42315602 -140099640 + MER20B DNA MER1_type 668 783 0 204 391 0 0 chr6 42315608 42315677 -140099565 + L2 LINE L2 3117 3185 -87 1625 145 7 53 chr6 42316044 42316348 -140098894 - AluJb SINE Alu -9 303 14 241 203 16 16 chr6 42317550 42317614 -140097628 - MIR SINE MIR -36 226 163 649 218 17 145 chr6 42318035 42318324 -140096918 + MIR SINE MIR 1 252 -10 964 146 118 2 chr6 42318349 42318605 -140096637 + Charlie1b DNA MER1_type 1 327 -196 596 118 0 82 chr6 42318605 42318715 -140096527 - AluSg SINE Alu -6 306 206 1170 42 0 7 chr6 42318715 42318857 -140096385 - AluSg SINE Alu -169 141 1 295 110 29 176 chr6 42318862 42318998 -140096244 + Charlie1b DNA MER1_type 319 434 -89 623 287 79 15 chr6 42319222 42319424 -140095818 + MIR SINE MIR 22 236 -26 316 271 239 7 chr6 42319769 42319924 -140095318 + MIR3 SINE MIR 15 205 -3 300 273 34 0 chr6 42320948 42321036 -140094206 + MIR SINE MIR 79 169 -93 201 91 30 0 chr6 42321158 42321191 -140094051 - MER5A DNA MER1_type -155 34 1 237 356 6 34 chr6 42321500 42321677 -140093565 + CT-rich Low_complexity Low_complexity 2 173 0 245 311 0 47 chr6 42322175 42322281 -140092961 + GA-rich Low_complexity Low_complexity 4 104 0 712 200 109 29 chr6 42322844 42323019 -140092223 + MER5A DNA MER1_type 1 189 0 1961 163 62 54 chr6 42323088 42323179 -140092063 + MLT1B LTR MaLR 1 90 -300 2329 92 0 6 chr6 42323179 42323493 -140091749 - AluSx SINE Alu 0 312 1 1961 163 62 54 chr6 42323493 42323788 -140091454 + MLT1B LTR MaLR 90 390 0 2118 102 0 0 chr6 42323954 42324263 -140090979 - AluSx SINE Alu 0 309 1 193 273 15 45 chr6 42324281 42324347 -140090895 + L2 LINE L2 2996 3059 -213 281 187 40 13 chr6 42324684 42324759 -140090483 + MER69 DNA AcHobo 2448 2524 -2 1950 101 25 7 chr6 42324921 42325218 -140090024 - AluSx SINE Alu 0 304 3 618 247 13 19 chr6 42325368 42325526 -140089716 - LTR24B LTR ERV1 -7 569 413 472 174 25 118 chr6 42325789 42325950 -140089292 + MIR3 SINE MIR 34 179 -29 510 243 65 22 chr6 42326615 42326800 -140088442 + L1ME3 LINE L1 5969 6161 -1 254 292 51 69 chr6 42328287 42328503 -140086739 + L2 LINE L2 2900 3111 -161 1590 249 90 35 chr6 42328579 42329130 -140086112 + MLT1E LTR MaLR 6 593 0 813 130 91 13 chr6 42329256 42329410 -140085832 - MER5A DNA MER1_type -23 166 1 2119 133 20 46 chr6 42329615 42329952 -140085290 + L1MB2 LINE L1 5790 6117 -54 2461 68 0 0 chr6 42329952 42330259 -140084983 + AluSc SINE Alu 1 307 -2 2119 133 20 46 chr6 42330259 42330312 -140084930 + L1MB2 LINE L1 6117 6170 -1 921 199 6 0 chr6 42330316 42330492 -140084750 + FRAM SINE Alu 1 169 -7 204 250 0 0 chr6 42330492 42330536 -140084706 + L2 LINE L2 3187 3230 -83 1741 135 10 28 chr6 42330781 42331069 -140084173 + AluSx SINE Alu 1 283 -29 255 311 62 85 chr6 42331392 42331569 -140083673 + L2 LINE L2 3097 3269 -3 212 328 0 0 chr6 42331541 42331599 -140083643 - MIR SINE MIR -1 261 204 * 872 153 35 20 chr6 42331617 42331820 -140083422 + LTR37A LTR ERV1 221 426 0 610 220 8 8 chr6 42331826 42331958 -140083284 + MER5B DNA MER1_type 46 177 -1 811 229 105 5 chr6 42331991 42332201 -140083041 - MIR SINE MIR -6 256 26 1177 254 93 21 chr6 42334252 42334673 -140080569 + LTR33 LTR ERVL 69 519 -2 1000 254 12 8 chr6 42335234 42335478 -140079764 + MIR SINE MIR 2 246 -16 2186 96 3 13 chr6 42336096 42336408 -140078834 - AluSq SINE Alu -4 309 1 866 235 63 23 chr6 42336733 42336954 -140078288 - MIR SINE MIR -1 261 32 448 116 23 0 chr6 42337211 42337297 -140077945 + GA-rich Low_complexity Low_complexity 2 89 0 1763 134 22 0 chr6 42337344 42337619 -140077623 + AluJo SINE Alu 32 312 0 230 255 160 57 chr6 42337666 42337772 -140077470 - MIR3 SINE MIR -18 190 74 319 313 18 48 chr6 42337926 42338092 -140077150 - MIR SINE MIR -46 216 56 234 274 105 0 chr6 42338689 42338784 -140076458 - MIR3 SINE MIR -19 189 85 273 255 170 11 chr6 42339396 42339490 -140075752 - MIR SINE MIR 0 262 154 2225 109 0 0 chr6 42339835 42340138 -140075104 + AluSx SINE Alu 1 303 -9 364 233 39 39 chr6 42340154 42340283 -140074959 + MIR3 SINE MIR 8 136 -72 227 284 123 31 chr6 42340426 42340588 -140074654 - MIR SINE MIR 0 262 86 1135 296 30 30 chr6 42341093 42341262 -140073980 + L2 LINE L2 2578 2745 -568 2111 123 0 0 chr6 42341262 42341562 -140073680 + AluSx SINE Alu 1 300 -12 1135 296 30 30 chr6 42341562 42341840 -140073402 + L2 LINE L2 2745 3032 -281 395 283 114 5 chr6 42341927 42342110 -140073132 - MIR SINE MIR -46 216 18 836 341 169 14 chr6 42342113 42342609 -140072633 + L3 LINE CR1 444 1016 -561 633 123 0 53 chr6 42342782 42342896 -140072346 + MIR SINE MIR 117 224 -38 2111 102 30 0 chr6 42342898 42343201 -140072041 + AluSx SINE Alu 1 312 0 1771 135 151 6 chr6 42343358 42343677 -140071565 + MLT1A1 LTR MaLR 1 365 0 411 267 19 0 chr6 42344107 42344238 -140071004 - MIR SINE MIR -62 146 18 1178 189 5 0 chr6 42344793 42345005 -140070237 - AluSg/x SINE Alu -13 297 85 2052 129 7 0 chr6 42345057 42345359 -140069883 + AluSq SINE Alu 1 304 -9 184 234 56 75 chr6 42345414 42345521 -140069721 + MIR3 SINE MIR 104 208 0 598 286 11 26 chr6 42345617 42345806 -140069436 + LTR33 LTR ERVL 1 186 -335 290 297 14 0 chr6 42346099 42346173 -140069069 + MIR3 SINE MIR 128 202 -6 648 271 58 21 chr6 42346541 42346781 -140068461 - MIR SINE MIR -4 258 4 2148 114 10 0 chr6 42347105 42347413 -140067829 - AluSx SINE Alu -1 311 1 1416 79 0 0 chr6 42348346 42348524 -140066718 - AluSg/x SINE Alu -3 309 132 922 254 131 62 chr6 42348532 42348671 -140066571 - L2 LINE L2 0 3313 3185 1561 175 10 32 chr6 42348671 42348980 -140066262 + AluJo SINE Alu 1 302 -10 922 254 131 62 chr6 42348980 42349472 -140065770 - L2 LINE L2 -128 3185 2651 312 296 94 19 chr6 42350601 42350760 -140064482 - MIR SINE MIR -70 192 22 223 200 0 0 chr6 42350953 42350993 -140064249 + MIR SINE MIR 208 247 -15 181 293 35 0 chr6 42351230 42351288 -140063954 - L2 LINE L2 -9 3304 3245 349 289 74 34 chr6 42351771 42351920 -140063322 - MIR SINE MIR 0 262 108 283 191 48 0 chr6 42352026 42352089 -140063153 + MIR3 SINE MIR 93 158 -50 374 304 196 12 chr6 42352097 42352419 -140062823 + LTR16C LTR ERVL 11 391 -100 1840 109 4 0 chr6 42352678 42352934 -140062308 + AluSx SINE Alu 1 257 -55 181 83 56 0 chr6 42352941 42352977 -140062265 + (CAA)n Simple_repeat Simple_repeat 2 39 0 231 302 82 44 chr6 42352980 42353139 -140062103 - MIR3 SINE MIR -17 191 27 383 289 44 18 chr6 42353942 42354056 -140061186 - MIR3 SINE MIR -4 204 88 264 271 56 93 chr6 42354851 42354958 -140060284 + MIR SINE MIR 91 193 -69 683 139 0 88 chr6 42356204 42356341 -140058901 + FLAM_A SINE Alu 18 142 0 748 285 45 0 chr6 42356820 42357041 -140058201 + MIR SINE MIR 18 248 -14 227 224 41 0 chr6 42357009 42357058 -140058184 + L2 LINE L2 3262 3312 -1 * 2023 141 0 3 chr6 42357227 42357539 -140057703 + AluJb SINE Alu 1 311 -1 2296 99 0 0 chr6 42357544 42357846 -140057396 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr6 42357864 42357885 -140057357 + AT_rich Low_complexity Low_complexity 1 21 0 280 354 126 15 chr6 42357997 42358203 -140057039 - MIR SINE MIR -1 261 33 264 256 204 15 chr6 42358662 42358799 -140056443 + MIR SINE MIR 20 182 -80 474 282 102 45 chr6 42358813 42359058 -140056184 + L2 LINE L2 2444 2702 -612 2211 114 0 0 chr6 42359058 42359366 -140055876 - AluSx SINE Alu -2 310 3 1530 104 9 0 chr6 42359368 42359579 -140055663 - AluSg/x SINE Alu -11 301 89 650 98 0 0 chr6 42359579 42359671 -140055571 + AluSg/x SINE Alu 208 299 -11 305 299 14 55 chr6 42359805 42359969 -140055273 - MIR SINE MIR -65 143 39 822 267 129 30 chr6 42360386 42360757 -140054485 + MLT1L LTR MaLR 190 597 -18 395 205 2 0 chr6 42361213 42361302 -140053940 + MIR SINE MIR 75 150 -58 2027 240 55 43 chr6 42361333 42361917 -140053325 + MLT1E LTR MaLR 3 593 0 1456 152 18 111 chr6 42361954 42362296 -140052946 + AluJo SINE Alu 1 310 -2 279 79 0 0 chr6 42362296 42362334 -140052908 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 2110 121 0 0 chr6 42362387 42362684 -140052558 + AluSx SINE Alu 1 297 -15 208 216 0 0 chr6 42362724 42362761 -140052481 + L2 LINE L2 3218 3254 -18 * 226 213 0 43 chr6 42362728 42362775 -140052467 + MIR SINE MIR 218 262 0 2051 101 3 29 chr6 42363527 42363835 -140051407 + AluSq SINE Alu 1 300 -13 646 244 128 0 chr6 42363939 42364119 -140051123 - MIR SINE MIR -53 209 7 200 167 21 0 chr6 42364731 42364779 -140050463 + CT-rich Low_complexity Low_complexity 2 50 0 214 129 0 0 chr6 42365146 42365177 -140050065 - L2 LINE L2 -18 3295 3265 258 304 156 15 chr6 42365239 42365374 -140049868 - MIR SINE MIR -21 241 88 226 258 10 88 chr6 42367504 42367698 -140047544 + G-rich Low_complexity Low_complexity 1 179 0 25 90 0 0 chr6 42367833 42367900 -140047342 + GC_rich Low_complexity Low_complexity 1 67 0 33 25 0 0 chr6 42368051 42368091 -140047151 + GC_rich Low_complexity Low_complexity 1 40 0 249 163 0 0 chr6 42368103 42368152 -140047090 + (TG)n Simple_repeat Simple_repeat 1 49 0 272 271 0 0 chr6 42369456 42369526 -140045716 - L2 LINE L2 -1 3271 3202 399 171 11 11 chr6 42369595 42369683 -140045559 - L1MB7 LINE L1 -16 6168 6081 286 89 22 0 chr6 42369723 42369768 -140045474 + MADE1 DNA Mariner 35 80 0 427 316 15 0 chr6 42369768 42369901 -140045341 - MIR SINE MIR -111 151 17 462 114 0 0 chr6 42370154 42370224 -140045018 + (A)n Simple_repeat Simple_repeat 1 70 0 241 344 55 8 chr6 42370227 42370355 -140044887 - L2 LINE L2 -17 3255 3122 2327 88 0 7 chr6 42370408 42370715 -140044527 + AluSx SINE Alu 1 305 -7 378 145 13 40 chr6 42370828 42370902 -140044340 - LTR16C LTR ERVL 0 491 420 919 199 42 0 chr6 42370902 42371093 -140044149 - MLT1A1 LTR MaLR 0 365 167 270 114 11 159 chr6 42371098 42371186 -140044056 - MLT1A1 LTR MaLR -176 189 115 * 1366 261 41 31 chr6 42371180 42371571 -140043671 - LTR16C LTR ERVL -96 395 1 2120 108 0 10 chr6 42371856 42372210 -140043032 + AluSx SINE Alu 1 351 0 593 310 11 22 chr6 42372846 42373030 -140042212 - MER91A DNA MER1_type -14 182 1 207 307 114 34 chr6 42373130 42373218 -140042024 - MIR3 SINE MIR -27 181 87 1003 213 199 7 chr6 42373680 42374181 -140041061 + L2 LINE L2 2678 3287 -26 2277 57 0 0 chr6 42374499 42374818 -140040424 - AluY SINE Alu 0 319 1 269 0 0 109 chr6 42374818 42374864 -140040378 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2139 92 3 0 chr6 42374864 42375147 -140040095 - AluY SINE Alu -27 284 1 904 132 0 0 chr6 42375171 42375292 -140039950 - FLAM_C SINE Alu -12 121 1 402 211 28 55 chr6 42375493 42375602 -140039640 - MIR SINE MIR -109 153 48 362 284 44 15 chr6 42375883 42376018 -140039224 - MIR3 SINE MIR -1 207 68 208 286 174 10 chr6 42376603 42376701 -140038541 - L3b LINE CR1 -240 1343 1230 186 170 32 149 chr6 42377444 42377538 -140037704 + MIR SINE MIR 110 192 -70 266 323 63 8 chr6 42377571 42377698 -140037544 - MIR3 SINE MIR -2 206 73 295 289 35 125 chr6 42378610 42378866 -140036376 + MIR SINE MIR 20 252 -10 188 263 100 50 chr6 42380121 42380201 -140035041 - L2 LINE L2 -48 3224 3141 874 256 80 0 chr6 42380299 42380537 -140034705 - MIR SINE MIR 0 262 6 322 211 122 0 chr6 42380898 42380988 -140034254 + MER5A DNA MER1_type 9 109 -80 1930 135 60 36 chr6 42382254 42382618 -140032624 + THE1C LTR MaLR 3 375 0 381 276 37 8 chr6 42384890 42385024 -140030218 - L1ME4a LINE L1 -1 6120 5983 554 247 39 0 chr6 42385081 42385235 -140030007 - MER117 DNA MER1_type -36 161 2 642 191 52 0 chr6 42385385 42385500 -140029742 + AluJo SINE Alu 2 122 -190 873 117 8 0 chr6 42385500 42385628 -140029614 - AluJo/FLAM SINE Alu -183 129 1 814 232 5 10 chr6 42385632 42385826 -140029416 + AluJo SINE Alu 120 312 0 2214 90 6 19 chr6 42385961 42386272 -140028970 + AluSg SINE Alu 1 307 -3 2328 92 0 0 chr6 42387158 42387461 -140027781 + AluSg SINE Alu 1 303 -7 297 0 0 0 chr6 42387825 42387858 -140027384 + (TG)n Simple_repeat Simple_repeat 2 34 0 2161 93 7 0 chr6 42387858 42388138 -140027104 - AluSc SINE Alu -24 285 1 1377 150 43 28 chr6 42388197 42388451 -140026791 + AluJb SINE Alu 1 258 -54 289 284 223 35 chr6 42388917 42389343 -140025899 - L1ME4a LINE L1 -294 5876 5371 525 218 10 0 chr6 42389407 42389508 -140025734 + MER8 DNA MER2_type 1 102 -137 231 191 0 0 chr6 42389507 42389549 -140025693 - Tigger2 DNA MER2_type -2675 43 2 * 359 255 66 0 chr6 42389549 42389655 -140025587 - L1ME4a LINE L1 -875 5271 5159 2426 89 3 6 chr6 42389695 42390009 -140025233 - AluSp SINE Alu 0 313 1 618 277 108 50 chr6 42390438 42390835 -140024407 + MLT1L LTR MaLR 196 615 0 617 291 35 17 chr6 42390927 42391099 -140024143 + MIR SINE MIR 31 205 -57 2110 235 118 12 chr6 42391250 42391918 -140023324 + L2 LINE L2 1329 2067 -1247 516 228 99 31 chr6 42391920 42392082 -140023160 + LTR16B LTR ERVL 292 464 0 1097 268 93 18 chr6 42392083 42392585 -140022657 + L2 LINE L2 2569 3133 -180 1103 175 43 9 chr6 42392585 42392796 -140022446 + MER20 DNA MER1_type 2 219 0 1097 268 93 18 chr6 42392796 42392991 -140022251 + L2 LINE L2 3133 3312 -1 293 252 151 50 chr6 42392999 42393237 -140022005 - MIR SINE MIR 0 262 1 2852 134 48 5 chr6 42394860 42395300 -140019942 - LTR32 LTR ERVL 0 471 13 386 296 78 34 chr6 42396349 42396528 -140018714 + HAL1b LINE L1 66 252 -1096 1687 179 7 21 chr6 42396569 42396899 -140018343 + AluJb SINE Alu 1 312 0 2016 133 10 10 chr6 42396987 42397296 -140017946 - AluJb SINE Alu -3 309 1 1034 129 32 25 chr6 42397301 42397476 -140017766 - MSTC LTR MaLR -48 370 205 400 250 110 71 chr6 42397476 42397868 -140017374 + HAL1b LINE L1 529 935 -413 330 220 33 0 chr6 42398328 42398419 -140016823 + L2 LINE L2 2207 2300 -1014 906 172 74 6 chr6 42398427 42398590 -140016652 - MER2 DNA MER2_type -1 344 171 651 256 59 49 chr6 42398590 42398633 -140016609 + L2 LINE L2 2652 2693 -620 2035 128 3 13 chr6 42398633 42398938 -140016304 - AluSx SINE Alu -10 302 1 651 256 59 49 chr6 42398938 42399249 -140015993 + L2 LINE L2 2693 3094 -219 393 287 46 9 chr6 42399247 42399355 -140015887 + L2 LINE L2 3202 3313 0 * 207 100 0 0 chr6 42400149 42400179 -140015063 + (TA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr6 42400242 42400266 -140014976 + AT_rich Low_complexity Low_complexity 1 24 0 1911 146 7 7 chr6 42400628 42400923 -140014319 - AluJb SINE Alu -17 295 1 189 244 0 0 chr6 42400963 42401008 -140014234 + L2 LINE L2 3262 3306 -7 194 97 97 0 chr6 42401111 42401142 -140014100 - L2 LINE L2 -96 3217 3184 474 238 199 28 chr6 42401163 42401606 -140013636 + HAL1b LINE L1 1193 1317 -31 296 296 6 62 chr6 42402056 42402218 -140013024 + MIR SINE MIR 48 200 -62 387 271 54 23 chr6 42402336 42402465 -140012777 + L2 LINE L2 3127 3259 -13 207 0 0 0 chr6 42402465 42402488 -140012754 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 307 254 148 42 chr6 42403227 42403416 -140011826 - MIR SINE MIR -14 248 40 208 343 0 0 chr6 42403420 42403487 -140011755 + GA-rich Low_complexity Low_complexity 2 68 0 567 267 56 6 chr6 42403684 42403845 -140011397 - MIR SINE MIR -18 244 76 216 273 232 0 chr6 42403928 42404027 -140011215 + L2 LINE L2 3149 3270 -2 279 250 144 19 chr6 42404296 42404400 -140010842 - L2 LINE L2 -20 3252 3136 2012 152 7 0 chr6 42404458 42404768 -140010474 + AluSq SINE Alu 1 312 -1 207 293 93 40 chr6 42404816 42404891 -140010351 - L2 LINE L2 -208 3064 2986 1251 230 113 40 chr6 42404910 42405348 -140009894 - L1ME3A LINE L1 -108 6062 5531 2424 88 0 0 chr6 42405348 42405643 -140009599 - AluSc SINE Alu -14 295 1 1251 230 113 40 chr6 42405643 42405942 -140009300 - L1ME3A LINE L1 -639 5531 5255 843 264 57 11 chr6 42406048 42406373 -140008869 - L1ME3A LINE L1 -1110 5036 4702 392 284 124 30 chr6 42406422 42406591 -140008651 + MIR SINE MIR 46 230 -32 3092 125 9 2 chr6 42406592 42407023 -140008219 + MER57B LTR ERV1 1 434 0 914 163 7 7 chr6 42407023 42407170 -140008072 + MER57B-int LTR ERV1 1 147 -7390 * 4061 148 104 15 chr6 42407144 42408121 -140007121 + MER57B-int LTR ERV1 595 1742 -4204 969 138 7 7 chr6 42408125 42408277 -140006965 + MER57B-int LTR ERV1 1866 2017 -3929 * 6261 146 46 31 chr6 42408273 42409407 -140005835 + MER57B-int LTR ERV1 2167 2722 -2293 2153 108 0 3 chr6 42409407 42409721 -140005521 + AluSq SINE Alu 1 313 0 6261 146 46 31 chr6 42409721 42410304 -140004938 + MER57B-int LTR ERV1 2722 3294 -1721 12476 92 113 76 chr6 42410307 42410736 -140004506 + MER57B-int LTR ERV1 5307 5719 -1818 2868 16 0 6 chr6 42410736 42411056 -140004186 - AluYb8 SINE Alu 0 318 1 12476 92 113 76 chr6 42411056 42411997 -140003245 + MER57B-int LTR ERV1 5719 6624 -913 1976 151 7 0 chr6 42411997 42412302 -140002940 + AluSx SINE Alu 1 307 -5 12476 92 113 76 chr6 42412302 42413081 -140002161 + MER57B-int LTR ERV1 6624 7537 0 3089 119 12 2 chr6 42413081 42413511 -140001731 + MER57B LTR ERV1 1 434 0 340 250 29 79 chr6 42413562 42413702 -140001540 + L2 LINE L2 3136 3268 -4 1031 62 0 0 chr6 42415134 42415264 -139999978 - AluY SINE Alu -9 302 173 22 56 0 0 chr6 42415271 42415307 -139999935 + AT_rich Low_complexity Low_complexity 1 36 0 233 336 64 9 chr6 42415645 42415755 -139999487 - L2 LINE L2 -429 2885 2770 1607 164 11 28 chr6 42415759 42416045 -139999197 - AluJo SINE Alu -31 281 1 610 237 56 45 chr6 42416105 42416303 -139998939 - MIR SINE MIR -61 201 2 469 354 114 25 chr6 42416314 42416372 -139998870 - L2 LINE L2 -555 2759 2708 2045 135 3 10 chr6 42416372 42416675 -139998567 + AluSx SINE Alu 1 301 -11 469 354 114 25 chr6 42416675 42417300 -139997942 - L2 LINE L2 -606 2708 2015 201 367 13 0 chr6 42417300 42417379 -139997863 - L2 LINE L2 -1414 1900 1821 606 273 97 63 chr6 42417608 42418022 -139997220 + L1MC4 LINE L1 7578 8005 -37 * 3016 178 4 17 chr6 42418018 42418553 -139996689 - L1MA10 LINE L1 -33 6301 5774 1939 151 0 17 chr6 42418563 42418862 -139996380 - AluSx SINE Alu -18 294 1 5259 42 2 2 chr6 42419014 42419609 -139995633 - L1PA5 LINE L1 -2 6152 5558 702 157 107 88 chr6 42420274 42420349 -139994893 - MER20 DNA MER1_type -57 162 90 973 184 6 23 chr6 42420349 42420523 -139994719 - FAM SINE Alu -4 171 1 702 157 107 88 chr6 42420523 42420606 -139994636 - MER20 DNA MER1_type -129 90 1 225 310 55 62 chr6 42420660 42420805 -139994437 - MER5A DNA MER1_type -42 147 4 2501 54 0 0 chr6 42420955 42421251 -139993991 - AluY SINE Alu -15 296 1 263 255 191 0 chr6 42421309 42421403 -139993839 - MER20 DNA MER1_type -107 112 1 1144 134 6 0 chr6 42421667 42421824 -139993418 + AluSx SINE Alu 1 158 -154 1135 115 0 0 chr6 42421914 42422071 -139993171 + AluSx SINE Alu 156 312 0 367 326 61 0 chr6 42422676 42422808 -139992434 + MIR SINE MIR 94 233 -29 306 309 154 0 chr6 42422888 42423011 -139992231 - MIR3 SINE MIR -3 205 64 232 88 0 0 chr6 42423503 42423537 -139991705 - L1MB8 LINE L1 -208 5970 5937 3481 163 32 63 chr6 42423573 42424136 -139991106 - L1MB8 LINE L1 -235 5949 5371 2214 118 3 0 chr6 42424136 42424424 -139990818 - AluSx SINE Alu -23 289 1 3481 163 32 63 chr6 42424424 42424863 -139990379 - L1MB8 LINE L1 -813 5371 4965 2417 86 3 6 chr6 42424863 42425177 -139990065 + AluSq SINE Alu 1 313 0 3481 163 32 63 chr6 42425177 42425241 -139990001 - L1MB8 LINE L1 -1219 4965 4901 1153 250 0 25 chr6 42425261 42425505 -139989737 + MER8 DNA MER2_type 2 239 0 465 224 0 10 chr6 42425625 42425723 -139989519 - MER5B DNA MER1_type -81 97 1 24 0 0 0 chr6 42425959 42425983 -139989259 + AT_rich Low_complexity Low_complexity 1 24 0 1108 169 0 0 chr6 42426094 42426271 -139988971 - FRAM SINE Alu -7 169 1 2356 97 3 0 chr6 42426285 42426595 -139988647 - AluSp SINE Alu -2 311 1 217 233 243 39 chr6 42427175 42427278 -139987964 + MER5C DNA MER1_type 1 124 -200 308 197 92 0 chr6 42427291 42427367 -139987875 + MER5C DNA MER1_type 229 311 -13 31 44 0 0 chr6 42427850 42427895 -139987347 + AT_rich Low_complexity Low_complexity 1 45 0 2337 80 3 0 chr6 42427917 42428203 -139987039 - AluSp SINE Alu -26 287 1 2353 104 0 0 chr6 42428208 42428515 -139986727 - AluSx SINE Alu -2 310 4 1537 148 0 4 chr6 42428521 42428757 -139986485 - AluJb SINE Alu -17 295 61 1148 146 0 68 chr6 42428798 42428866 -139986376 - AluSx SINE Alu -121 191 120 2268 95 7 3 chr6 42428866 42429162 -139986080 - AluSq SINE Alu -16 297 1 1148 146 0 68 chr6 42429162 42429298 -139985944 - AluSx SINE Alu -192 120 1 306 0 0 0 chr6 42429306 42429340 -139985902 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2594 74 0 0 chr6 42429342 42429653 -139985589 - AluY SINE Alu 0 311 1 2550 54 0 10 chr6 42429676 42429990 -139985252 - AluY SINE Alu 0 311 1 456 249 155 11 chr6 42430516 42430697 -139984545 - MIR SINE MIR -6 256 50 814 178 0 0 chr6 42431124 42431242 -139984000 + FLAM_C SINE Alu 2 119 -24 189 0 0 0 chr6 42431245 42431266 -139983976 + (TG)n Simple_repeat Simple_repeat 2 22 0 1830 60 0 0 chr6 42431483 42431700 -139983542 - AluY SINE Alu -16 295 79 979 258 17 0 chr6 42433101 42433341 -139981901 - MIR SINE MIR -6 256 13 561 255 68 12 chr6 42433780 42433941 -139981301 - MIR3 SINE MIR -4 204 35 563 298 76 0 chr6 42434337 42434508 -139980734 - MIR SINE MIR -1 261 78 258 217 0 0 chr6 42435040 42435109 -139980133 + CT-rich Low_complexity Low_complexity 2 70 0 514 205 80 18 chr6 42435115 42435227 -139980015 - L2 LINE L2 0 3313 3195 351 0 0 0 chr6 42435295 42435334 -139979908 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 22 70 0 0 chr6 42436459 42436502 -139978740 + AT_rich Low_complexity Low_complexity 1 43 0 1826 223 64 14 chr6 42436680 42437119 -139978123 - MLT1C LTR MaLR 0 467 7 708 279 115 31 chr6 42437172 42437588 -139977654 - L1MC/D LINE L1 -2038 5770 5320 1412 140 0 9 chr6 42437606 42437820 -139977422 + AluJb SINE Alu 89 300 -12 466 269 0 25 chr6 42437959 42438078 -139977164 - MIR SINE MIR -69 193 78 779 157 50 0 chr6 42438152 42438273 -139976969 - FLAM_A SINE Alu -6 127 1 369 289 19 13 chr6 42438285 42438441 -139976801 - L1MC/D LINE L1 -1112 5034 4878 2019 145 3 0 chr6 42438465 42438761 -139976481 + AluJb SINE Alu 1 297 -15 590 101 38 0 chr6 42438761 42438840 -139976402 - AluJ/FLAM SINE Alu -222 90 9 325 240 129 64 chr6 42438852 42439023 -139976219 - L1MC/D LINE L1 -1710 4436 4255 21 0 0 0 chr6 42439197 42439218 -139976024 + AT_rich Low_complexity Low_complexity 1 21 0 2331 83 0 0 chr6 42439227 42439533 -139975709 + AluSx SINE Alu 1 291 -21 34 24 0 0 chr6 42439518 42439559 -139975683 + AT_rich Low_complexity Low_complexity 1 41 0 453 245 0 11 chr6 42439590 42439684 -139975558 - MER91B DNA MER1_type -10 180 88 208 284 62 37 chr6 42439749 42439830 -139975412 + MER91 DNA MER1_type 43 125 -65 220 320 94 41 chr6 42439997 42440241 -139975001 + L2 LINE L2 2629 2885 -429 * 237 284 187 32 chr6 42440231 42440386 -139974856 + MIR SINE MIR 67 245 -17 2006 156 3 0 chr6 42441899 42442201 -139973041 + AluSx SINE Alu 1 303 -9 2173 125 0 0 chr6 42442728 42443017 -139972225 + AluSx SINE Alu 1 289 -23 223 300 62 39 chr6 42443344 42443474 -139971768 - MIR SINE MIR -12 250 118 1225 190 139 8 chr6 42443480 42443738 -139971504 + AluYa8 SINE Alu 1 292 -18 298 189 0 0 chr6 42443763 42443816 -139971426 - MIR SINE MIR -133 129 77 811 121 8 53 chr6 42444959 42445091 -139970151 + FLAM_C SINE Alu 9 134 -9 394 191 0 0 chr6 42445124 42445192 -139970050 - MIR SINE MIR -57 151 84 497 305 23 0 chr6 42447954 42448085 -139967157 - MIR3 SINE MIR -10 198 65 533 111 0 10 chr6 42449660 42449764 -139965478 - L1MB1 LINE L1 -1 6167 6092 1950 150 3 3 chr6 42449766 42450053 -139965189 + AluJo SINE Alu 1 287 -25 2430 87 0 10 chr6 42450075 42450387 -139964855 + AluSq SINE Alu 1 309 -4 915 137 0 8 chr6 42451070 42451201 -139964041 + FLAM_C SINE Alu 2 131 -2 2259 123 7 0 chr6 42454271 42454581 -139960661 + AluSx SINE Alu 1 312 0 288 77 0 0 chr6 42454597 42454636 -139960606 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 2275 121 0 3 chr6 42454826 42455124 -139960118 - AluSx SINE Alu -15 297 1 194 0 39 0 chr6 42455159 42455185 -139960057 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2348 96 0 7 chr6 42455198 42455501 -139959741 + AluSq SINE Alu 10 310 -3 974 134 53 6 chr6 42455529 42455700 -139959542 + MLT1B LTR MaLR 212 390 0 519 245 38 33 chr6 42455774 42455971 -139959271 + L1MC4a LINE L1 5423 5606 -515 1187 216 124 11 chr6 42455997 42456355 -139958887 + MLT1G1 LTR MaLR 1 341 -201 1369 161 18 5 chr6 42456358 42456576 -139958666 + AluJo SINE Alu 1 221 -91 782 254 5 28 chr6 42456641 42456858 -139958384 + MLT1G1 LTR MaLR 329 540 -2 342 234 180 36 chr6 42456879 42457022 -139958220 + L1MC4a LINE L1 5743 5915 -1893 2448 138 22 32 chr6 42457022 42457237 -139958005 - MSTD LTR MaLR 0 396 185 2354 86 0 16 chr6 42457237 42457540 -139957702 - AluSg SINE Alu -12 298 1 2448 138 22 32 chr6 42457540 42457724 -139957518 - MSTD LTR MaLR -211 185 1 342 234 180 36 chr6 42457724 42457747 -139957495 + L1MC4a LINE L1 5915 5933 -1875 1883 179 0 6 chr6 42457754 42458067 -139957175 + AluJo SINE Alu 1 311 -1 948 168 19 6 chr6 42458067 42458220 -139957022 + AluJo SINE Alu 125 282 -30 309 242 10 81 chr6 42458222 42458321 -139956921 - L1MC4 LINE L1 -1338 6704 6613 785 119 0 0 chr6 42458572 42458681 -139956561 + (T)n Simple_repeat Simple_repeat 1 109 0 430 296 17 0 chr6 42458658 42458834 -139956408 + CT-rich Low_complexity Low_complexity 2 180 0 * 201 240 24 32 chr6 42458853 42458978 -139956264 + CT-rich Low_complexity Low_complexity 5 128 0 372 355 59 21 chr6 42460898 42461084 -139954158 - L1MC4 LINE L1 -1869 5939 5747 230 306 180 30 chr6 42461330 42461703 -139953539 + L2 LINE L2 1924 2352 -962 5635 174 77 35 chr6 42462097 42462829 -139952413 - L1MC1 LINE L1 -14 6319 5619 2622 71 0 0 chr6 42462829 42463139 -139952103 - AluY SINE Alu -1 310 1 5635 174 77 35 chr6 42463139 42463789 -139951453 - L1MC1 LINE L1 -714 5619 4837 2309 107 0 0 chr6 42463789 42464088 -139951154 + AluSg SINE Alu 1 299 -11 5635 174 77 35 chr6 42464088 42464372 -139950870 - L1MC1 LINE L1 -1496 4837 4566 23 54 0 0 chr6 42464592 42464629 -139950613 + AT_rich Low_complexity Low_complexity 1 37 0 1289 150 88 66 chr6 42464674 42464974 -139950268 + AluSg SINE Alu 2 307 0 394 259 65 80 chr6 42464974 42465623 -139949619 - HAL1b LINE L1 -708 640 2 2403 93 10 0 chr6 42466284 42466594 -139948648 + AluSp SINE Alu 1 313 0 362 357 42 24 chr6 42466730 42466943 -139948299 + MIR SINE MIR 28 244 -18 264 253 12 48 chr6 42467039 42467122 -139948120 - MIR3 SINE MIR -17 191 112 2070 154 29 3 chr6 42468250 42468601 -139946641 - MLT1A1 LTR MaLR 0 365 6 267 304 43 0 chr6 42468964 42469079 -139946163 + L2 LINE L2 3150 3269 -3 297 307 31 68 chr6 42469620 42469812 -139945430 + L1ME LINE L1 5681 5865 -305 1057 186 83 0 chr6 42469849 42470042 -139945200 - MER3 DNA MER1_type 0 209 1 1601 177 51 3 chr6 42470645 42470939 -139944303 + AluJb SINE Alu 1 308 -4 7431 56 9 10 chr6 42470948 42472451 -139942791 + SVA Other Other 1 1386 0 1391 189 89 32 chr6 42472493 42472774 -139942468 + AluJo SINE Alu 7 303 -9 411 286 57 53 chr6 42472789 42473034 -139942208 + L1MEd LINE L1 647 892 -5227 370 268 106 63 chr6 42473046 42473477 -139941765 + L1ME3 LINE L1 5416 5866 -296 524 183 25 25 chr6 42473499 42473642 -139941600 + GA-rich Low_complexity Low_complexity 1 142 -710 2320 67 43 3 chr6 42473642 42473941 -139941301 + AluY SINE Alu 1 311 0 524 183 25 25 chr6 42473941 42473985 -139941257 + GA-rich Low_complexity Low_complexity 142 184 -668 2447 90 0 3 chr6 42473985 42474295 -139940947 + AluSc SINE Alu 1 309 0 524 183 25 25 chr6 42474295 42474351 -139940891 + GA-rich Low_complexity Low_complexity 184 852 0 21 0 0 0 chr6 42475058 42475079 -139940163 + AT_rich Low_complexity Low_complexity 1 21 0 385 196 29 10 chr6 42475150 42475252 -139939990 - MER5C DNA MER1_type -3 321 218 696 173 84 0 chr6 42475252 42475428 -139939814 + L1M4 LINE L1 5233 5421 -743 528 253 14 0 chr6 42475425 42475571 -139939671 + L1MD2 LINE L1 6199 6346 -13 * 2275 107 0 22 chr6 42475575 42475892 -139939350 + AluSx SINE Alu 1 310 -2 759 268 66 0 chr6 42475893 42476091 -139939151 - MER5C DNA MER1_type -109 215 5 241 284 68 81 chr6 42476397 42476545 -139938697 + MIR SINE MIR 47 192 -70 2905 110 94 116 chr6 42476959 42477193 -139938049 - MER6A DNA MER2_type -260 605 367 2083 138 3 0 chr6 42477193 42477490 -139937752 + AluSx SINE Alu 1 298 -14 2905 110 94 116 chr6 42477490 42477874 -139937368 - MER6A DNA MER2_type -498 367 1 708 241 27 11 chr6 42477880 42478067 -139937175 - MIR SINE MIR 0 262 73 280 253 60 0 chr6 42478102 42478185 -139937057 + L2 LINE L2 3226 3313 0 22 56 0 0 chr6 42478392 42478428 -139936814 + AT_rich Low_complexity Low_complexity 1 36 0 753 154 8 0 chr6 42478439 42478556 -139936686 - FLAM_C SINE Alu -25 118 1 418 125 25 0 chr6 42478580 42478660 -139936582 + CT-rich Low_complexity Low_complexity 1 82 0 227 328 8 31 chr6 42478763 42478891 -139936351 + T-rich Low_complexity Low_complexity 5 129 0 246 189 49 33 chr6 42479354 42479476 -139935766 + A-rich Low_complexity Low_complexity 6 129 0 396 182 21 16 chr6 42479508 42479633 -139935609 + CT-rich Low_complexity Low_complexity 1 124 -371 2267 86 36 17 chr6 42479633 42479935 -139935307 - AluSc SINE Alu -1 308 1 396 182 21 16 chr6 42479935 42480001 -139935241 + CT-rich Low_complexity Low_complexity 124 495 0 2036 107 26 0 chr6 42480001 42480271 -139934971 - AluSx SINE Alu -35 277 1 283 254 35 48 chr6 42480581 42480809 -139934433 - L1MEd LINE L1 -5281 838 614 4369 140 22 48 chr6 42480870 42481397 -139933845 - L1MB3 LINE L1 -8 6175 5677 2409 81 3 0 chr6 42481397 42481692 -139933550 - AluSp SINE Alu -17 296 1 4369 140 22 48 chr6 42481692 42482027 -139933215 - L1MB3 LINE L1 -506 5677 5335 2066 133 0 23 chr6 42482098 42482399 -139932843 - AluSx SINE Alu -18 294 1 3226 215 24 32 chr6 42482404 42483142 -139932100 - L1MB3 LINE L1 -981 5165 4434 2158 83 3 64 chr6 42483142 42483455 -139931787 + AluSc SINE Alu 1 294 -15 3226 215 24 32 chr6 42483455 42483617 -139931625 - L1MB3 LINE L1 -1712 4434 4272 213 39 0 0 chr6 42483624 42483650 -139931592 + (TG)n Simple_repeat Simple_repeat 2 27 0 344 319 60 50 chr6 42483667 42483968 -139931274 - L1MEd LINE L1 -5664 455 152 618 229 196 11 chr6 42484224 42484403 -139930839 - MIR SINE MIR -15 247 36 205 167 0 0 chr6 42484886 42484922 -139930320 + (CTG)n Simple_repeat Simple_repeat 1 36 0 317 85 0 0 chr6 42485195 42485242 -139930000 + MADE1 DNA Mariner 34 80 0 319 245 180 1 chr6 42485258 42485363 -139929879 - MIR SINE MIR -62 146 34 251 324 93 0 chr6 42485566 42485674 -139929568 + MIR SINE MIR 28 145 -117 245 264 21 64 chr6 42485677 42485817 -139929425 + L1ME3A LINE L1 5824 5957 -213 202 376 12 12 chr6 42486137 42486222 -139929020 + MIR SINE MIR 45 129 -79 204 257 114 0 chr6 42486383 42486453 -139928789 + MIR SINE MIR 63 140 -68 1267 169 24 40 chr6 42486678 42486927 -139928315 + MIR SINE MIR 13 257 -5 370 312 149 45 chr6 42486964 42487493 -139927749 + L2 LINE L2 2454 3038 -234 372 229 171 19 chr6 42487876 42487981 -139927261 - L2 LINE L2 -2 3311 3191 1731 123 32 14 chr6 42489695 42490015 -139925227 + AluJb SINE Alu 1 325 0 351 0 0 0 chr6 42490430 42490469 -139924773 + (TG)n Simple_repeat Simple_repeat 2 40 0 223 260 0 39 chr6 42490696 42490773 -139924469 + C-rich Low_complexity Low_complexity 3 76 0 2353 71 10 3 chr6 42492565 42492876 -139922366 - AluSp SINE Alu 0 313 1 2001 99 45 0 chr6 42495522 42495814 -139919428 - AluSq SINE Alu -8 305 1 2444 158 19 67 chr6 42495823 42496148 -139919094 - L1MB8 LINE L1 -1 6177 5889 1414 186 120 0 chr6 42496148 42496406 -139918836 - AluJo SINE Alu -13 289 1 2444 158 19 67 chr6 42496406 42496648 -139918594 - L1MB8 LINE L1 -289 5889 5637 199 212 152 0 chr6 42501042 42501108 -139914134 + L2 LINE L2 3146 3221 -51 205 269 9 130 chr6 42502212 42502320 -139912922 + MIR SINE MIR 46 140 -68 222 313 0 0 chr6 42504195 42504262 -139910980 + (TA)n Simple_repeat Simple_repeat 2 68 0 347 89 0 0 chr6 42504262 42504307 -139910935 - MER20 DNA MER1_type 0 219 175 1625 123 0 38 chr6 42504307 42504568 -139910674 - AluJo SINE Alu -20 292 42 916 126 138 6 chr6 42504636 42504795 -139910447 - MER20 DNA MER1_type -35 184 5 399 351 99 5 chr6 42505173 42505395 -139909847 - Charlie8 DNA MER1_type -2161 256 14 186 133 0 0 chr6 42508953 42508983 -139906259 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 * 207 0 0 0 chr6 42508981 42509004 -139906238 + (T)n Simple_repeat Simple_repeat 1 23 0 2259 79 0 32 chr6 42512478 42512794 -139902448 - AluSp SINE Alu -7 306 1 200 313 0 0 chr6 42516159 42516223 -139899019 + (CCCCAG)n Simple_repeat Simple_repeat 5 68 0 337 235 0 25 chr6 42517087 42517168 -139898074 - MIR SINE MIR -28 234 156 613 300 81 83 chr6 42518108 42518515 -139896727 + L1MEd LINE L1 540 945 -5174 2216 79 28 0 chr6 42518601 42518892 -139896350 + AluSq SINE Alu 1 299 -14 450 312 64 0 chr6 42518976 42519133 -139896109 + L2 LINE L2 3106 3272 0 1067 219 80 33 chr6 42519457 42519791 -139895451 - MSTD LTR MaLR -11 385 2 2283 86 3 6 chr6 42520108 42520422 -139894820 + AluSp SINE Alu 1 313 0 222 62 0 0 chr6 42520453 42520485 -139894757 + (TATG)n Simple_repeat Simple_repeat 1 32 0 1770 147 7 0 chr6 42520487 42520760 -139894482 - AluSx SINE Alu -37 275 1 794 204 45 17 chr6 42520854 42521030 -139894212 - MIR SINE MIR -34 228 48 1922 137 0 35 chr6 42521358 42521671 -139893571 - AluSq SINE Alu -11 302 1 245 279 115 19 chr6 42521802 42521906 -139893336 + MIR SINE MIR 35 148 -114 2078 85 26 0 chr6 42522219 42522491 -139892751 - AluSg SINE Alu -31 279 1 1989 116 3 7 chr6 42522707 42523030 -139892212 - AluSx SINE Alu 0 322 1 1266 209 78 39 chr6 42523398 42523715 -139891527 + L1ME2 LINE L1 5785 6119 -45 1989 123 3 10 chr6 42523715 42524025 -139891217 - AluSc SINE Alu -1 308 1 1266 209 78 39 chr6 42524025 42524065 -139891177 + L1ME2 LINE L1 6119 6156 -8 25 51 0 0 chr6 42524072 42524111 -139891131 + AT_rich Low_complexity Low_complexity 1 39 0 1048 261 14 0 chr6 42524262 42524469 -139890773 + MER63A DNA MER1_type 1 210 0 2198 120 0 0 chr6 42524622 42524923 -139890319 + AluSx SINE Alu 1 301 -11 423 314 20 68 chr6 42525022 42525270 -139889972 + MER102a DNA MER1_type 95 330 0 291 275 20 150 chr6 42525487 42525687 -139889555 + MER5B DNA MER1_type 5 178 0 1150 221 69 93 chr6 42526183 42526534 -139888708 - L2 LINE L2 -4 3309 2972 1591 167 33 0 chr6 42526534 42526804 -139888438 - AluJo SINE Alu -26 286 8 1150 221 69 93 chr6 42526804 42526946 -139888296 - L2 LINE L2 -341 2972 2828 2091 88 0 7 chr6 42527036 42527310 -139887932 + AluSx SINE Alu 22 293 -19 318 282 39 0 chr6 42527734 42527837 -139887405 - L2 LINE L2 -7 3306 3200 226 228 32 8 chr6 42529719 42529842 -139885400 + (CA)n Simple_repeat Simple_repeat 2 127 0 433 319 111 56 chr6 42530405 42530510 -139884732 + L2 LINE L2 2909 3007 -265 1874 117 35 10 chr6 42530510 42530800 -139884442 - AluSg SINE Alu -13 297 1 433 319 111 56 chr6 42530800 42531036 -139884206 + L2 LINE L2 3007 3269 -3 1728 128 78 0 chr6 42531179 42531474 -139883768 + MER1B DNA MER1_type 15 339 0 616 261 69 11 chr6 42531551 42531739 -139883503 - MIR SINE MIR -5 257 59 590 260 207 26 chr6 42531841 42532145 -139883097 - MLT2F LTR ERVL -55 608 250 243 139 23 0 chr6 42532232 42532275 -139882967 - MLT2F LTR ERVL -535 93 50 615 271 133 34 chr6 42533179 42533533 -139881709 + L1MC5 LINE L1 7308 7696 -265 529 260 55 51 chr6 42533620 42533658 -139881584 + L1MC5 LINE L1 7662 7698 -263 2216 114 0 3 chr6 42533658 42533966 -139881276 + AluSx SINE Alu 1 307 -5 529 260 55 51 chr6 42533966 42534200 -139881042 + L1MC5 LINE L1 7698 7935 -26 619 157 33 0 chr6 42534688 42534809 -139880433 + MIR SINE MIR 81 205 -57 1761 92 8 4 chr6 42535004 42535254 -139879988 + AluSq SINE Alu 1 251 -62 921 134 0 0 chr6 42535432 42535566 -139879676 - FLAM_C SINE Alu -4 139 6 238 246 60 97 chr6 42536336 42536470 -139878772 + MER94 DNA DNA 1 129 -5 380 248 43 43 chr6 42536490 42536607 -139878635 - MIR SINE MIR -43 219 103 289 93 37 0 chr6 42536705 42536759 -139878483 + (TG)n Simple_repeat Simple_repeat 1 56 0 885 256 94 16 chr6 42536810 42537229 -139878013 - LTR16A LTR ERVL 0 450 1 284 302 50 43 chr6 42537942 42538081 -139877161 + MIR3 SINE MIR 20 159 -49 * 400 271 126 0 chr6 42538074 42538225 -139877017 + MIR SINE MIR 16 185 -77 230 281 47 0 chr6 42539398 42539462 -139875780 - MIR SINE MIR -122 140 74 589 192 15 31 chr6 42539654 42539784 -139875458 + MIR SINE MIR 30 157 -105 2264 97 0 0 chr6 42539838 42540138 -139875104 + AluSx SINE Alu 1 300 -12 1378 211 97 31 chr6 42540234 42540594 -139874648 - MLT1B LTR MaLR 0 390 7 587 268 63 97 chr6 42540599 42541003 -139874239 - MLT1H1 LTR MaLR -149 406 10 259 329 19 63 chr6 42541536 42541694 -139873548 + MIR SINE MIR 34 184 -78 264 295 52 92 chr6 42542225 42542398 -139872844 - MIR SINE MIR -3 259 94 2311 125 0 0 chr6 42542536 42542848 -139872394 + AluJb SINE Alu 1 312 0 350 303 39 72 chr6 42542857 42543038 -139872204 - MIR SINE MIR -36 172 1 237 237 0 0 chr6 42543071 42543130 -139872112 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 537 212 0 9 chr6 42543158 42543271 -139871971 - AluJb SINE Alu -199 113 2 312 345 50 0 chr6 42543273 42543412 -139871830 + MIR SINE MIR 88 233 -29 308 272 44 26 chr6 42543442 42543556 -139871686 - L2 LINE L2 -16 3256 3141 653 240 7 7 chr6 42544344 42544490 -139870752 - MIR SINE MIR -108 154 9 257 271 86 0 chr6 42545365 42545435 -139869807 - MIR SINE MIR -182 80 5 295 171 0 57 chr6 42546292 42546362 -139868880 - MER5A DNA MER1_type -80 109 44 2234 119 0 10 chr6 42546641 42546943 -139868299 - AluSx SINE Alu -13 299 1 24 32 0 0 chr6 42546945 42546976 -139868266 + AT_rich Low_complexity Low_complexity 1 31 0 771 293 4 31 chr6 42547164 42547435 -139867807 - L1MC4a LINE L1 -549 5810 5668 305 206 35 159 chr6 42547442 42547612 -139867630 - MIR SINE MIR -113 149 1 423 115 13 198 chr6 42548735 42548892 -139866350 + MER91B DNA MER1_type 3 130 -60 464 221 11 0 chr6 42548909 42549004 -139866238 + MER91B DNA MER1_type 90 185 -5 518 294 20 0 chr6 42549783 42549936 -139865306 + MIR SINE MIR 31 186 -76 2229 135 3 0 chr6 42549947 42550258 -139864984 - AluSx SINE Alu 0 312 1 221 83 28 0 chr6 42550877 42550913 -139864329 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 813 187 0 0 chr6 42550995 42551275 -139863967 + (TG)n Simple_repeat Simple_repeat 1 280 0 312 273 25 16 chr6 42551340 42551461 -139863781 + MIR SINE MIR 32 153 -109 376 269 51 58 chr6 42552045 42552201 -139863041 + MIR SINE MIR 30 184 -24 368 261 65 36 chr6 42552930 42553068 -139862174 - MIR SINE MIR -33 229 88 190 261 62 0 chr6 42553352 42553417 -139861825 + MIR SINE MIR 117 185 -77 923 223 54 84 chr6 42553943 42554166 -139861076 + L1MC4 LINE L1 7555 7783 -259 2314 103 3 0 chr6 42554166 42554467 -139860775 + AluSq SINE Alu 1 302 -11 923 223 54 84 chr6 42554467 42554745 -139860497 + L1MC4 LINE L1 7783 8041 -1 266 242 211 11 chr6 42556459 42556554 -139858688 - MIR3 SINE MIR -25 183 70 2113 112 7 26 chr6 42556825 42557128 -139858114 + AluSq SINE Alu 1 297 -16 269 274 92 41 chr6 42557323 42557492 -139857750 + MIR SINE MIR 37 229 -33 227 352 38 9 chr6 42557760 42557865 -139857377 - MIR SINE MIR -108 154 47 439 207 36 27 chr6 42558461 42558572 -139856670 + MER81 DNA DNA 3 114 0 2008 147 20 0 chr6 42558723 42559015 -139856227 - AluJb SINE Alu -13 299 2 478 222 233 11 chr6 42559149 42559325 -139855917 - MIR SINE MIR 0 262 48 278 287 26 9 chr6 42559368 42559483 -139855759 + GA-rich Low_complexity Low_complexity 3 119 0 1937 176 0 0 chr6 42559747 42560042 -139855200 - AluJo SINE Alu -15 297 3 2424 103 0 6 chr6 42560059 42560371 -139854871 - AluSx SINE Alu -2 310 1 2367 201 110 18 chr6 42560577 42560805 -139854437 - L1ME1 LINE L1 -5 6161 5934 567 319 36 36 chr6 42560805 42561254 -139853988 - L1PB4 LINE L1 -257 5899 5451 981 169 0 0 chr6 42561302 42561450 -139853792 + FRAM SINE Alu 13 160 -16 2494 91 3 0 chr6 42561524 42561832 -139853410 - AluSq SINE Alu -3 310 2 318 337 47 24 chr6 42561897 42562066 -139853176 + MIR SINE MIR 42 214 -48 573 280 192 33 chr6 42562154 42562713 -139852529 + L2 LINE L2 2506 3200 -113 2119 86 72 3 chr6 42562713 42563004 -139852238 - AluY SINE Alu 0 311 1 573 280 192 33 chr6 42563004 42563123 -139852119 + L2 LINE L2 3200 3299 -14 2226 113 0 3 chr6 42563129 42563430 -139851812 + AluSx SINE Alu 1 300 -12 208 231 66 77 chr6 42563687 42563778 -139851464 - MIR SINE MIR -76 132 43 374 223 0 108 chr6 42563862 42563992 -139851250 - MER63 DNA MER1_type -320 742 1 479 264 258 6 chr6 42564426 42564604 -139850638 - MIR SINE MIR 0 262 40 237 266 171 58 chr6 42564621 42564801 -139850441 + MIR SINE MIR 16 206 -56 2233 130 13 0 chr6 42564824 42565172 -139850070 + AluSx SINE Alu 1 352 0 2443 79 3 3 chr6 42565377 42565680 -139849562 - AluSx SINE Alu -9 303 1 1327 68 6 0 chr6 42565982 42566159 -139849083 + L1PA8 LINE L1 5989 6166 -6 21 36 0 0 chr6 42566162 42566190 -139849052 + AT_rich Low_complexity Low_complexity 1 28 0 849 149 0 129 chr6 42566190 42566346 -139848896 + MER2 DNA MER2_type 1 127 -218 1724 177 57 0 chr6 42566346 42566663 -139848579 + MER1B DNA MER1_type 3 337 0 849 149 0 129 chr6 42566663 42566707 -139848535 + MER2 DNA MER2_type 127 175 -170 1152 127 11 33 chr6 42566707 42566722 -139848520 + AluSq SINE Alu 121 135 -178 2436 96 0 0 chr6 42566722 42567025 -139848217 + AluSx SINE Alu 1 303 -9 1152 127 11 33 chr6 42567025 42567190 -139848052 + AluSq SINE Alu 135 297 -16 235 157 0 20 chr6 42567190 42567241 -139848001 + MER2 DNA MER2_type 173 222 -123 1376 166 0 9 chr6 42567241 42567452 -139847790 - AluJb SINE Alu -19 293 85 570 216 36 0 chr6 42567471 42567582 -139847660 + MER2 DNA MER2_type 231 345 0 613 219 53 24 chr6 42567611 42567780 -139847462 - L1ME3 LINE L1 -1 6161 5988 228 195 110 0 chr6 42567789 42567871 -139847371 - L1MC4a LINE L1 -1638 6170 6080 1907 163 0 3 chr6 42567907 42568190 -139847052 - AluJb SINE Alu -30 282 1 225 94 0 0 chr6 42568273 42568305 -139846937 + (TTATA)n Simple_repeat Simple_repeat 3 34 0 2533 84 0 0 chr6 42569182 42569491 -139845751 + AluSg SINE Alu 1 309 -1 921 230 108 43 chr6 42569632 42569773 -139845469 + MLT1H LTR MaLR 43 173 -422 1939 151 7 17 chr6 42569773 42570071 -139845171 + AluJb SINE Alu 1 295 -17 921 230 108 43 chr6 42570071 42570360 -139844882 + MLT1H LTR MaLR 173 595 0 1727 179 0 45 chr6 42570494 42570655 -139844587 - AluJb SINE Alu -18 294 152 2335 77 0 32 chr6 42570655 42570968 -139844274 - AluY SINE Alu -8 303 1 1727 179 0 45 chr6 42570968 42571114 -139844128 - AluJb SINE Alu -160 152 1 323 244 16 87 chr6 42571125 42571252 -139843990 - MIR SINE MIR -58 150 72 846 161 87 0 chr6 42571260 42571421 -139843821 + MLT1B LTR MaLR 1 175 -215 1926 131 38 3 chr6 42571423 42571714 -139843528 + AluSx SINE Alu 1 301 -11 1280 123 5 0 chr6 42571796 42571999 -139843243 - L1MD3 LINE L1 -8 7987 7784 1604 150 6 29 chr6 42572000 42572162 -139843080 - Charlie5 DNA MER1_type -31 2593 2429 2354 125 0 0 chr6 42572162 42572474 -139842768 - AluSx SINE Alu 0 312 1 1604 150 6 29 chr6 42572474 42572657 -139842585 - Charlie5 DNA MER1_type -195 2429 2256 343 169 102 110 chr6 42572688 42572723 -139842519 - MER3 DNA MER1_type -10 152 118 2476 74 3 3 chr6 42572723 42573020 -139842222 + AluSp SINE Alu 1 297 -16 343 169 102 110 chr6 42573020 42573102 -139842140 - MER3 DNA MER1_type -44 118 36 196 300 22 44 chr6 42573377 42573467 -139841775 - MIR SINE MIR -72 190 103 246 116 0 0 chr6 42573709 42573752 -139841490 + (GA)n Simple_repeat Simple_repeat 1 43 0 424 299 84 25 chr6 42574380 42574590 -139840652 - MIR SINE MIR -7 255 36 590 234 63 24 chr6 42574745 42574997 -139840245 + L1MEc LINE L1 2120 2381 -4015 325 311 66 0 chr6 42575169 42575275 -139839967 + MIR SINE MIR 76 188 -74 219 36 0 0 chr6 42575685 42575713 -139839529 + (CCTG)n Simple_repeat Simple_repeat 2 29 0 216 286 0 0 chr6 42575814 42575863 -139839379 + A-rich Low_complexity Low_complexity 3 51 0 273 119 0 0 chr6 42575867 42575909 -139839333 + (GGGGA)n Simple_repeat Simple_repeat 5 46 0 359 298 48 0 chr6 42575977 42576081 -139839161 - MIR SINE MIR -50 212 104 225 341 64 23 chr6 42579024 42579197 -139836045 - L1MC/D LINE L1 -1882 5926 5747 191 319 172 21 chr6 42579443 42579816 -139835426 + L2 LINE L2 1924 2352 -962 5653 178 44 30 chr6 42580210 42580941 -139834301 - L1MC1 LINE L1 -14 6319 5599 2643 71 0 0 chr6 42580941 42581252 -139833990 - AluY SINE Alu 0 311 1 5653 178 44 30 chr6 42581252 42581902 -139833340 - L1MC1 LINE L1 -734 5599 4846 2325 107 0 0 chr6 42581902 42582201 -139833041 + AluSg SINE Alu 1 299 -11 5653 178 44 30 chr6 42582201 42582486 -139832756 - L1MC1 LINE L1 -1487 4846 4566 681 240 268 13 chr6 42582712 42582788 -139832454 - HAL1b LINE L1 0 1348 1293 1393 153 88 61 chr6 42582788 42583082 -139832160 + AluJo SINE Alu 2 303 -9 681 240 268 13 chr6 42583082 42583393 -139831849 - HAL1b LINE L1 -55 1293 862 352 240 146 0 chr6 42583493 42583589 -139831653 - FLAM_A SINE Alu -1 132 23 2235 133 3 0 chr6 42583589 42583897 -139831345 - AluSx SINE Alu -3 309 1 193 222 22 0 chr6 42584108 42584153 -139831089 + MIR SINE MIR 96 141 -67 1343 172 0 0 chr6 42584169 42584373 -139830869 + AluJb SINE Alu 20 223 -89 207 88 0 0 chr6 42585213 42585247 -139829995 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1030 98 0 0 chr6 42585275 42585408 -139829834 - AluJb SINE Alu -179 133 1 669 263 151 22 chr6 42585512 42585577 -139829665 - MIR SINE MIR 0 262 207 555 192 64 35 chr6 42585577 42585749 -139829493 - MER104 DNA MER2_type -3 177 1 669 263 151 22 chr6 42585749 42585915 -139829327 - MIR SINE MIR -55 207 1 397 345 56 11 chr6 42585982 42586249 -139828993 + L2 LINE L2 2453 2731 -583 367 341 72 36 chr6 42586326 42586575 -139828667 - L2 LINE L2 -88 3184 2927 1485 256 47 35 chr6 42586963 42587504 -139827738 + L2 LINE L2 2767 3313 0 414 0 0 0 chr6 42588726 42588772 -139826470 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2317 87 7 0 chr6 42588773 42589062 -139826180 - AluSp SINE Alu -22 291 1 826 226 119 29 chr6 42589208 42589518 -139825724 + MER46C DNA MER2_type 1 338 0 2416 97 0 0 chr6 42590004 42590314 -139824928 - AluSg SINE Alu 0 310 1 1934 161 0 3 chr6 42590314 42590606 -139824636 - AluJb SINE Alu -17 295 5 424 167 13 13 chr6 42590632 42590710 -139824532 - MIR SINE MIR -176 86 9 2338 121 0 0 chr6 42590831 42591138 -139824104 - AluSx SINE Alu -5 307 1 260 262 79 11 chr6 42591793 42591949 -139823293 + MIR SINE MIR 21 190 -62 260 274 21 21 chr6 42592841 42592936 -139822306 + L1ME4a LINE L1 5692 5786 -335 1494 112 4 0 chr6 42592956 42593188 -139822054 - HSMAR2 DNA Mariner -1 1301 1069 616 136 19 0 chr6 42593334 42593437 -139821805 + AluSg/x SINE Alu 198 302 -7 4842 119 18 65 chr6 42593456 42593709 -139821533 - HSMAR2 DNA Mariner -285 1017 754 2495 87 0 3 chr6 42593709 42594021 -139821221 - AluSq SINE Alu -2 311 1 2221 130 0 0 chr6 42594025 42594324 -139820918 - AluJb SINE Alu -13 299 1 4842 119 18 65 chr6 42594324 42594476 -139820766 - HSMAR2 DNA Mariner -551 751 593 2384 97 0 19 chr6 42594476 42594785 -139820457 - AluSx SINE Alu -6 306 4 4842 119 18 65 chr6 42594785 42595098 -139820144 - HSMAR2 DNA Mariner -709 593 267 2395 87 0 3 chr6 42595098 42595397 -139819845 + AluSg SINE Alu 1 298 -12 2460 71 0 23 chr6 42595399 42595708 -139819534 + AluY SINE Alu 3 304 -7 1561 108 0 0 chr6 42595709 42595912 -139819330 + AluSg/x SINE Alu 109 311 -1 4842 119 18 65 chr6 42595912 42596086 -139819156 - HSMAR2 DNA Mariner -1035 267 156 456 116 0 0 chr6 42596311 42596397 -139818845 + (C)n Simple_repeat Simple_repeat 1 86 0 1985 159 0 3 chr6 42596462 42596763 -139818479 - AluJo SINE Alu -12 300 1 639 153 23 8 chr6 42596763 42596894 -139818348 - HSMAR2 DNA Mariner -1169 133 1 265 214 24 12 chr6 42597005 42597089 -139818153 + L1ME4a LINE L1 5935 6019 -102 2260 92 24 0 chr6 42597090 42597384 -139817858 - AluSx SINE Alu -11 301 1 279 196 0 0 chr6 42597437 42597488 -139817754 - MIR SINE MIR -114 148 98 1078 159 0 6 chr6 42598814 42598990 -139816252 + FAM SINE Alu 1 175 0 311 273 39 23 chr6 42599037 42599165 -139816077 - L1ME4a LINE L1 -58 6063 5934 371 265 88 15 chr6 42599303 42599439 -139815803 + MER103 DNA DNA 19 164 -2 396 285 0 42 chr6 42599493 42599637 -139815605 - L1ME4a LINE L1 -297 5824 5687 2188 116 0 3 chr6 42599644 42599937 -139815305 - AluSc SINE Alu -17 292 1 469 227 120 7 chr6 42600503 42600665 -139814577 - MIR SINE MIR -64 144 12 24 0 0 0 chr6 42600757 42600781 -139814461 + AT_rich Low_complexity Low_complexity 1 24 0 1963 117 4 0 chr6 42600792 42601056 -139814186 + AluSx SINE Alu 1 265 -47 180 0 0 0 chr6 42601164 42601184 -139814058 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1388 129 17 46 chr6 42601187 42601345 -139813897 - AluJo SINE Alu -33 279 129 2352 113 3 0 chr6 42601345 42601656 -139813586 + AluSp SINE Alu 2 313 0 1388 129 17 46 chr6 42601656 42601737 -139813505 - AluJo SINE Alu -183 129 47 180 171 0 0 chr6 42601931 42601966 -139813276 + L2 LINE L2 3188 3222 -50 1237 192 19 93 chr6 42602548 42602913 -139812329 + MER46C DNA MER2_type 1 338 0 1909 138 11 7 chr6 42602950 42603259 -139811983 + AluJb SINE Alu 1 310 0 1278 201 27 17 chr6 42603264 42603558 -139811684 + L1ME3 LINE L1 5858 6154 -8 780 211 24 24 chr6 42604450 42604610 -139810632 + MER3 DNA MER1_type 1 163 -46 2000 148 3 7 chr6 42604610 42604913 -139810329 + AluSx SINE Alu 1 302 -10 780 211 24 24 chr6 42604913 42604961 -139810281 + MER3 DNA MER1_type 162 209 0 1644 132 0 0 chr6 42605390 42605610 -139809632 - AluSx SINE Alu -39 273 54 2012 96 48 7 chr6 42605782 42606102 -139809140 + AluSq SINE Alu 1 331 0 260 304 72 87 chr6 42606167 42606233 -139809009 - MIR SINE MIR -50 212 147 2128 99 39 0 chr6 42606233 42606517 -139808725 + AluSp SINE Alu 1 295 -18 260 304 72 87 chr6 42606517 42606588 -139808654 - MIR SINE MIR -115 147 77 2290 93 0 30 chr6 42607330 42607631 -139807611 - AluSg SINE Alu -18 292 1 2020 111 17 17 chr6 42608166 42608454 -139806788 + AluSx SINE Alu 1 288 -24 1255 91 5 14 chr6 42609138 42609347 -139805895 + L1MA2 LINE L1 6098 6304 0 2152 106 0 3 chr6 42609361 42609678 -139805564 + AluSx SINE Alu 1 316 0 816 183 0 0 chr6 42609760 42609886 -139805356 + AluJb SINE Alu 1 126 -186 2068 130 7 10 chr6 42609896 42610197 -139805045 + AluJo SINE Alu 1 300 -12 377 284 151 46 chr6 42610209 42610427 -139804815 - MIR SINE MIR -20 242 2 2258 88 14 0 chr6 42610700 42610985 -139804257 + AluSx SINE Alu 12 300 -12 288 332 35 19 chr6 42611037 42611217 -139804025 - MIR SINE MIR -41 221 35 882 236 123 23 chr6 42611850 42612068 -139803174 - MER46C DNA MER2_type -6 332 74 2110 94 4 7 chr6 42612068 42612343 -139802899 + AluSx SINE Alu 3 276 -36 882 236 123 23 chr6 42612343 42612425 -139802817 - MER46C DNA MER2_type -264 74 2 662 222 48 20 chr6 42612461 42612676 -139802566 - MIR SINE MIR -46 216 2 612 314 50 29 chr6 42612937 42613076 -139802166 + MIR SINE MIR 2 137 -125 2063 133 27 0 chr6 42613076 42613369 -139801873 + AluSg SINE Alu 1 301 -9 2252 78 61 0 chr6 42613369 42613661 -139801581 + AluY SINE Alu 1 311 0 612 314 50 29 chr6 42613661 42613759 -139801483 + MIR SINE MIR 136 245 -17 1488 195 11 4 chr6 42613863 42614135 -139801107 - AluJo SINE Alu -38 274 1 264 304 76 0 chr6 42614174 42614266 -139800976 + L2 LINE L2 3174 3272 0 239 213 0 0 chr6 42614553 42614600 -139800642 - U6 snRNA snRNA 0 107 61 1893 146 14 7 chr6 42614777 42615064 -139800178 + AluSx SINE Alu 10 298 -14 404 126 241 0 chr6 42615095 42615182 -139800060 + FLAM_A SINE Alu 22 129 -4 2230 133 0 0 chr6 42615184 42615477 -139799765 + AluSx SINE Alu 1 293 -19 2355 87 3 10 chr6 42615477 42615788 -139799454 + AluSc SINE Alu 1 309 0 695 247 18 18 chr6 42615788 42615954 -139799288 - LTR67 LTR ERVL -367 190 25 240 200 20 0 chr6 42616034 42616084 -139799158 + L2 LINE L2 3200 3250 -22 2580 65 0 3 chr6 42616525 42616834 -139798408 - AluY SINE Alu -3 308 1 21 71 0 0 chr6 42617722 42617764 -139797478 + GC_rich Low_complexity Low_complexity 1 42 0 395 228 88 22 chr6 42618870 42619006 -139796236 + MIR SINE MIR 7 151 -111 1342 134 0 5 chr6 42619015 42619226 -139796016 - AluSg/x SINE Alu 0 306 97 1921 98 0 0 chr6 42619226 42619470 -139795772 - AluSq SINE Alu -69 244 1 429 345 54 15 chr6 42619829 42620032 -139795210 + MIR SINE MIR 2 212 -50 289 264 123 0 chr6 42620075 42620181 -139795061 + L2 LINE L2 3154 3272 0 359 247 151 36 chr6 42620733 42620899 -139794343 + L1M2 LINE L1 1767 1951 -4898 301 202 101 0 chr6 42621218 42621307 -139793935 + L1ME2 LINE L1 6067 6164 0 2130 145 0 0 chr6 42621332 42621628 -139793614 + AluSx SINE Alu 1 296 -16 598 148 9 0 chr6 42621643 42621751 -139793491 + FLAM_C SINE Alu 2 110 -33 335 224 64 24 chr6 42621799 42621924 -139793318 + L1MC5 LINE L1 7797 7926 -35 247 310 86 9 chr6 42621984 42622100 -139793142 - MIR3 SINE MIR -29 179 55 291 306 15 52 chr6 42622435 42622569 -139792673 + MIR SINE MIR 56 184 -78 1118 116 48 5 chr6 42622573 42622762 -139792480 + L1PA2 LINE L1 5959 6155 0 2337 102 6 6 chr6 42622781 42623094 -139792148 + AluSp SINE Alu 1 313 0 2069 127 3 22 chr6 42623096 42623411 -139791831 + AluSq SINE Alu 1 309 -4 185 0 40 0 chr6 42623540 42623565 -139791677 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1721 173 18 0 chr6 42623570 42623854 -139791388 + AluJb SINE Alu 1 289 -23 965 180 0 6 chr6 42623875 42624042 -139791200 - AluJb SINE Alu -10 302 137 229 343 0 0 chr6 42624364 42624437 -139790805 + L2 LINE L2 2603 2675 -639 427 211 13 122 chr6 42625170 42625326 -139789916 + MIR SINE MIR 119 257 -5 2290 97 0 0 chr6 42625479 42625769 -139789473 + AluSc SINE Alu 1 290 -19 1786 125 19 106 chr6 42625780 42626092 -139789150 + AluJb SINE Alu 7 291 -21 213 39 0 0 chr6 42626260 42626286 -139788956 + (A)n Simple_repeat Simple_repeat 1 26 0 1289 62 0 12 chr6 42628424 42628585 -139786657 + AluY SINE Alu 1 159 -152 1316 129 0 0 chr6 42628686 42628856 -139786386 - AluSx SINE Alu -138 174 5 288 0 0 0 chr6 42628967 42628999 -139786243 + (TA)n Simple_repeat Simple_repeat 2 33 0 1342 138 156 34 chr6 42629009 42629137 -139786105 - AluJo SINE Alu 0 302 191 2223 123 7 0 chr6 42629137 42629447 -139785795 - AluSp SINE Alu -1 312 1 1342 138 156 34 chr6 42629447 42629587 -139785655 - AluJo SINE Alu -111 191 1 835 245 33 17 chr6 42629652 42629893 -139785349 - MIR SINE MIR -2 260 16 566 248 13 40 chr6 42629946 42630167 -139785075 + MIR SINE MIR 7 216 -46 215 291 76 13 chr6 42630843 42630922 -139784320 + L2 LINE L2 3188 3271 -1 889 126 0 84 chr6 42631259 42631326 -139783916 - MSTD LTR MaLR -243 153 82 2363 94 0 0 chr6 42631326 42631624 -139783618 - AluY SINE Alu -13 298 1 889 126 0 84 chr6 42631624 42631723 -139783519 - MSTD LTR MaLR -314 82 1 229 284 0 0 chr6 42631724 42631791 -139783451 + L2 LINE L2 1730 1796 -1518 402 169 42 0 chr6 42631794 42631865 -139783377 - MER2 DNA MER2_type -2 343 270 2331 108 3 10 chr6 42631865 42632179 -139783063 + AluSx SINE Alu 1 312 0 2425 101 0 0 chr6 42632216 42632524 -139782718 + AluSx SINE Alu 1 308 -4 1778 186 10 3 chr6 42632617 42632924 -139782318 + AluJb SINE Alu 1 309 -3 878 136 13 132 chr6 42632925 42633047 -139782195 - MER2 DNA MER2_type -140 205 70 2079 122 0 35 chr6 42633047 42633358 -139781884 - AluSx SINE Alu -12 300 1 878 136 13 132 chr6 42633358 42633403 -139781839 - MER2 DNA MER2_type -275 70 69 677 164 0 79 chr6 42633403 42633543 -139781699 + AluJo SINE Alu 1 129 -173 878 136 13 132 chr6 42633543 42633602 -139781640 - MER2 DNA MER2_type -276 69 5 789 261 124 18 chr6 42633620 42633903 -139781339 + L2 LINE L2 1812 2124 -1190 947 159 46 0 chr6 42633905 42634056 -139781186 + AluJo SINE Alu 136 293 -19 351 233 111 0 chr6 42634059 42634149 -139781093 + L2 LINE L2 2116 2215 -1099 2349 100 23 0 chr6 42634444 42634745 -139780497 + AluSg SINE Alu 1 308 -2 1341 104 16 0 chr6 42634758 42634941 -139780301 + AluSg/x SINE Alu 126 311 -1 477 287 75 6 chr6 42635053 42635227 -139780015 + MIR SINE MIR 29 214 -48 274 221 105 0 chr6 42635635 42635730 -139779512 + L2 LINE L2 3200 3304 -9 2492 81 0 7 chr6 42635733 42636041 -139779201 - AluSq SINE Alu -7 306 1 2136 141 7 0 chr6 42636225 42636530 -139778712 + AluSx SINE Alu 1 307 -5 2231 101 11 0 chr6 42636707 42636985 -139778257 + AluSx SINE Alu 1 281 -31 204 40 0 0 chr6 42636988 42637013 -139778229 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2164 112 0 7 chr6 42637035 42637353 -139777889 + AluSx SINE Alu 1 316 0 2256 104 0 29 chr6 42637364 42637498 -139777744 + AluSc SINE Alu 1 137 -172 2304 111 0 0 chr6 42637498 42637795 -139777447 + AluSx SINE Alu 1 297 -15 2256 104 0 29 chr6 42637795 42637967 -139777275 + AluSc SINE Alu 137 298 -11 244 248 28 128 chr6 42637979 42638197 -139777045 + MIR SINE MIR 65 260 -2 2287 84 0 3 chr6 42638387 42638672 -139776570 + AluSx SINE Alu 8 291 -21 2331 116 7 0 chr6 42638933 42639243 -139775999 + AluSp SINE Alu 2 313 0 1103 165 11 0 chr6 42639248 42639424 -139775818 + AluJo SINE Alu 121 298 -14 212 245 277 0 chr6 42639424 42639518 -139775724 + MER5A DNA MER1_type 67 186 -3 2182 119 0 28 chr6 42640066 42640406 -139774836 - AluSc SINE Alu 0 331 1 2274 116 10 0 chr6 42640430 42640733 -139774509 - AluSx SINE Alu -6 306 1 240 323 21 0 chr6 42640946 42641039 -139774203 + L1ME LINE L1 5719 5813 -308 612 228 146 38 chr6 42641096 42641509 -139773733 - LTR33 LTR ERVL -5 516 9 911 186 116 0 chr6 42641509 42641708 -139773534 + MER39 LTR ERV1 1 222 -485 1616 75 0 44 chr6 42641710 42641936 -139773306 + AluSq SINE Alu 1 216 -97 279 108 0 46 chr6 42642039 42642104 -139773138 + (GGGGA)n Simple_repeat Simple_repeat 4 65 0 1741 145 134 6 chr6 42642111 42642184 -139773058 + MER39 LTR ERV1 209 271 -436 2071 132 3 7 chr6 42642184 42642479 -139772763 - AluSx SINE Alu -18 294 1 1741 145 134 6 chr6 42642479 42642763 -139772479 + MER39 LTR ERV1 271 612 -95 1942 140 6 16 chr6 42642764 42643078 -139772164 + AluJo SINE Alu 1 311 -1 865 176 0 13 chr6 42643088 42643247 -139771995 + FAM SINE Alu 1 46 -3 2520 37 3 50 chr6 42643259 42643581 -139771661 - AluY SINE Alu -4 307 1 309 227 237 0 chr6 42643721 42643818 -139771424 - MIR3 SINE MIR -54 154 35 659 160 0 0 chr6 42645038 42645138 -139770104 + AluJ/FLAM SINE Alu 2 101 -211 2312 116 7 0 chr6 42645708 42646018 -139769224 + AluSx SINE Alu 1 312 0 200 196 87 0 chr6 42646034 42646080 -139769162 + MIR SINE MIR 202 251 -11 268 331 140 0 chr6 42646160 42646317 -139768925 + L2 LINE L2 2879 3057 -256 2323 85 3 16 chr6 42647198 42647503 -139767739 + AluSx SINE Alu 1 301 -11 2087 143 0 13 chr6 42647509 42647816 -139767426 + AluJo SINE Alu 7 309 -3 444 111 61 50 chr6 42647852 42647951 -139767291 + FLAM_A SINE Alu 42 141 -1 442 231 65 81 chr6 42647994 42648049 -139767193 + MIR SINE MIR 70 124 -138 749 233 0 0 chr6 42648049 42648182 -139767060 - FLAM_C SINE Alu 0 133 1 442 231 65 81 chr6 42648182 42648312 -139766930 + MIR SINE MIR 124 252 -10 299 320 10 10 chr6 42648660 42648757 -139766485 - MIR3 SINE MIR -23 185 89 625 206 0 14 chr6 42648762 42648903 -139766339 + MIR3 SINE MIR 53 191 -17 258 56 0 0 chr6 42648955 42648991 -139766251 + (TG)n Simple_repeat Simple_repeat 2 37 0 446 156 0 0 chr6 42648992 42649056 -139766186 - AluSg/x SINE Alu -33 277 214 1955 113 7 34 chr6 42649193 42649484 -139765758 + AluSx SINE Alu 17 299 -13 195 42 0 0 chr6 42649484 42649508 -139765734 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 194 61 0 30 chr6 42649575 42649608 -139765634 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2006 131 51 56 chr6 42649791 42650181 -139765061 - MLT1B LTR MaLR -2 388 1 2125 226 31 38 chr6 42650223 42650775 -139764467 + MLT1E2 LTR MaLR 76 623 -3 2742 29 3 0 chr6 42650906 42651216 -139764026 + AluY SINE Alu 1 311 0 240 227 0 0 chr6 42651468 42651512 -139763730 + L2 LINE L2 3215 3258 -14 1877 106 85 21 chr6 42651512 42651818 -139763424 - AluY SINE Alu 0 324 1 * 2051 134 27 0 chr6 42651818 42652109 -139763133 - AluSg SINE Alu -11 299 1 417 326 67 0 chr6 42652113 42652248 -139762994 - MIR SINE MIR -117 145 2 699 222 48 20 chr6 42652509 42652724 -139762518 + MIR SINE MIR 2 216 -46 857 233 123 23 chr6 42652760 42652842 -139762400 + MER46C DNA MER2_type 2 74 -264 2096 94 4 7 chr6 42652842 42653117 -139762125 - AluSx SINE Alu -36 276 3 857 233 123 23 chr6 42653117 42653335 -139761907 + MER46C DNA MER2_type 74 332 -6 310 332 35 19 chr6 42653968 42654148 -139761094 + MIR SINE MIR 35 221 -41 2250 88 14 0 chr6 42654200 42654485 -139760757 - AluSx SINE Alu -12 300 12 185 286 0 29 chr6 42654657 42654727 -139760515 + MIR SINE MIR 194 261 -1 411 284 151 46 chr6 42654758 42654976 -139760266 + MIR SINE MIR 2 242 -20 1888 153 10 10 chr6 42654988 42655288 -139759954 - AluJo SINE Alu -12 300 1 1770 122 8 0 chr6 42655483 42655729 -139759513 + AluSx SINE Alu 53 300 -12 319 295 152 57 chr6 42655840 42656084 -139759158 - L1MC/D LINE L1 -2093 5715 5449 289 264 191 9 chr6 42656521 42656631 -139758611 + MIR3 SINE MIR 70 199 -9 363 96 0 0 chr6 42657873 42657925 -139757317 + (TCCC)n Simple_repeat Simple_repeat 4 55 0 2433 97 3 0 chr6 42657935 42658245 -139756997 - AluSq SINE Alu -2 311 1 2258 98 10 7 chr6 42659152 42659457 -139755785 + AluSg SINE Alu 1 306 -4 23 0 0 0 chr6 42659466 42659489 -139755753 + AT_rich Low_complexity Low_complexity 1 23 0 463 261 32 6 chr6 42659517 42659674 -139755568 - L1MC4a LINE L1 -1916 5892 5732 2612 49 0 3 chr6 42659690 42659994 -139755248 - AluY SINE Alu -7 304 2 701 119 0 34 chr6 42660070 42660188 -139755054 - FLAM_C SINE Alu -2 141 28 499 299 167 23 chr6 42660433 42660781 -139754461 - L3 LINE CR1 -89 1488 1091 2142 134 7 7 chr6 42660787 42661085 -139754157 + AluSx SINE Alu 3 300 -12 1607 182 86 57 chr6 42661090 42661578 -139753664 + L1ME1 LINE L1 5442 5943 -223 1652 152 24 35 chr6 42661584 42661673 -139753569 + AluJb SINE Alu 16 104 -208 2231 132 0 7 chr6 42661673 42661983 -139753259 - AluSx SINE Alu -4 308 1 1652 152 24 35 chr6 42661983 42662182 -139753060 + AluJb SINE Alu 104 301 -11 354 335 81 11 chr6 42662295 42662480 -139752762 - L3 LINE CR1 -796 781 584 591 200 17 0 chr6 42662618 42662738 -139752504 + L1M3 LINE L1 5551 5672 -511 2495 68 3 7 chr6 42662738 42663046 -139752196 + AluY SINE Alu 1 307 -4 974 134 53 6 chr6 42663074 42663245 -139751997 + MLT1B LTR MaLR 212 390 0 500 251 38 33 chr6 42663319 42663516 -139751726 + L1MC4 LINE L1 5423 5606 -515 1180 216 124 11 chr6 42663542 42663900 -139751342 + MLT1G1 LTR MaLR 1 341 -201 1369 161 18 5 chr6 42663903 42664121 -139751121 + AluJo SINE Alu 1 221 -91 782 254 5 28 chr6 42664186 42664403 -139750839 + MLT1G1 LTR MaLR 329 540 -2 281 215 0 31 chr6 42664434 42664567 -139750675 + L1MC4 LINE L1 5754 5787 -334 2433 140 22 32 chr6 42664567 42664782 -139750460 - MSTD LTR MaLR 0 396 185 2314 89 0 20 chr6 42664782 42665086 -139750156 - AluSg SINE Alu -12 298 1 2433 140 22 32 chr6 42665086 42665270 -139749972 - MSTD LTR MaLR -211 185 1 281 215 0 31 chr6 42665270 42665293 -139749949 + L1MC4 LINE L1 5787 5809 -312 1883 179 0 6 chr6 42665300 42665613 -139749629 + AluJo SINE Alu 1 311 -1 1013 163 19 0 chr6 42665613 42665765 -139749477 + AluJo SINE Alu 125 282 -30 352 235 10 71 chr6 42665767 42665865 -139749377 - L1MC4 LINE L1 -1338 6704 6613 * 359 178 0 41 chr6 42665843 42665916 -139749326 + L1MCa LINE L1 1995 2064 -4362 325 282 42 47 chr6 42665871 42666127 -139749115 - L1ME4a LINE L1 -153 6703 5768 330 129 43 43 chr6 42665941 42666011 -139749231 + L1MCa LINE L1 1995 2064 -4362 325 143 43 57 chr6 42666004 42666074 -139749168 + L1MCa LINE L1 1995 2063 -4363 * 341 286 42 25 chr6 42666096 42666215 -139749027 + L1MC4 LINE L1 6589 6709 -1333 28 48 0 0 chr6 42666783 42666825 -139748417 + AT_rich Low_complexity Low_complexity 1 42 0 531 284 84 42 chr6 42666832 42667262 -139747980 + L1ME4a LINE L1 5616 6063 -58 1672 151 6 70 chr6 42667708 42668020 -139747222 + AluJo SINE Alu 1 292 -20 1746 176 79 0 chr6 42668027 42668368 -139746874 + MLT1B LTR MaLR 1 368 -22 2019 114 24 7 chr6 42668392 42668681 -139746561 - AluSq SINE Alu -19 294 1 261 276 11 46 chr6 42669727 42669814 -139745428 - MIR3 SINE MIR -23 185 102 460 156 0 9 chr6 42670071 42670229 -139745013 - MER53 DNA DNA 0 189 1 1851 159 17 13 chr6 42671023 42671325 -139743917 - AluJb SINE Alu -9 303 1 451 194 44 26 chr6 42673339 42673459 -139741783 + MIR SINE MIR 30 150 -68 775 191 125 0 chr6 42673522 42673690 -139741552 - MER5A DNA MER1_type 0 189 1 2085 153 0 3 chr6 42674026 42674339 -139740903 - AluJo SINE Alu 0 312 1 2452 49 20 13 chr6 42674578 42674884 -139740358 + AluY SINE Alu 1 308 -3 491 308 34 13 chr6 42674951 42675185 -139740057 - L1ME4a LINE L1 -346 5775 5537 301 222 60 143 chr6 42675424 42675521 -139739721 + L2 LINE L2 2451 2522 -792 1036 151 7 0 chr6 42675521 42675673 -139739569 + FRAM SINE Alu 1 153 -13 301 222 60 143 chr6 42675673 42675791 -139739451 + L2 LINE L2 2522 2648 -666 937 256 127 31 chr6 42675914 42676508 -139738734 + L2 LINE L2 2656 3306 -7 494 250 14 66 chr6 42676681 42676867 -139738375 + MIR3 SINE MIR 12 191 -63 477 0 0 0 chr6 42677004 42677057 -139738185 + (TG)n Simple_repeat Simple_repeat 2 54 0 202 249 18 6 chr6 42677355 42677520 -139737722 + (CA)n Simple_repeat Simple_repeat 2 168 0 981 136 0 6 chr6 42677537 42677699 -139737543 + L1PA15 LINE L1 5870 6030 -135 2351 115 0 0 chr6 42677708 42678020 -139737222 + AluSx SINE Alu 1 312 0 252 128 0 0 chr6 42678021 42678068 -139737174 + L1PA15 LINE L1 6119 6165 0 1535 141 126 11 chr6 42678450 42678720 -139736522 + AluJb SINE Alu 1 301 -1 1853 153 12 40 chr6 42679189 42679373 -139735869 - AluJo SINE Alu 0 312 139 1852 124 47 20 chr6 42679373 42679672 -139735570 - AluSx SINE Alu -5 307 1 1853 153 12 40 chr6 42679672 42679808 -139735434 - AluJo SINE Alu -173 139 1 437 319 72 38 chr6 42679810 42680073 -139735169 + L2 LINE L2 2968 3239 -33 1923 125 60 0 chr6 42680434 42680715 -139734527 + AluSx SINE Alu 1 298 -14 1795 268 65 23 chr6 42680728 42681639 -139733603 - L2 LINE L2 -1 3312 2344 2304 95 0 0 chr6 42681651 42681977 -139733265 - AluSq SINE Alu 0 326 1 26 30 0 0 chr6 42681987 42682020 -139733222 + AT_rich Low_complexity Low_complexity 1 33 0 1020 169 12 0 chr6 42682025 42682185 -139733057 + FRAM SINE Alu 1 162 -4 715 208 26 0 chr6 42682190 42682344 -139732898 + MLT1E LTR MaLR 436 593 0 847 145 0 36 chr6 42682399 42682537 -139732705 + FLAM_C SINE Alu 1 133 0 522 288 101 52 chr6 42682547 42682873 -139732369 - MLT1F LTR MaLR -200 342 1 1294 265 118 4 chr6 42682873 42683364 -139731878 - L2 LINE L2 -1012 2302 1756 228 350 87 10 chr6 42684020 42684123 -139731119 + MIR SINE MIR 34 144 -118 279 157 0 181 chr6 42684240 42684323 -139730919 + MER20 DNA MER1_type 2 69 -150 2353 89 0 0 chr6 42684354 42684656 -139730586 - AluY SINE Alu -9 302 1 300 27 0 0 chr6 42684657 42684694 -139730548 + (TG)n Simple_repeat Simple_repeat 2 38 0 2228 95 0 0 chr6 42684694 42684978 -139730264 - AluSx SINE Alu -28 284 1 752 220 69 6 chr6 42684995 42685168 -139730074 - MER3 DNA MER1_type -24 185 2 238 246 15 31 chr6 42686218 42686283 -139728959 + MIR SINE MIR 28 91 -117 1670 148 21 54 chr6 42687208 42687326 -139727916 - L1MB4 LINE L1 -12 6168 6048 2145 135 3 0 chr6 42687326 42687629 -139727613 - AluSx SINE Alu -8 304 1 1670 148 21 54 chr6 42687629 42687842 -139727400 - L1MB4 LINE L1 -132 6048 5848 227 329 7 51 chr6 42688159 42688296 -139726946 + L2 LINE L2 2550 2680 -634 * 252 338 13 0 chr6 42688294 42688371 -139726871 - L2 LINE L2 -4 3268 3191 1816 108 35 19 chr6 42688445 42688703 -139726539 + AluSg SINE Alu 49 310 0 388 297 92 38 chr6 42688801 42688986 -139726256 - L2 LINE L2 -212 3060 2866 225 0 0 0 chr6 42689088 42689113 -139726129 + (TG)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr6 42689151 42689174 -139726068 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2239 110 0 0 chr6 42689177 42689458 -139725784 - AluSx SINE Alu -31 281 1 2245 97 0 0 chr6 42689638 42689928 -139725314 + AluSc SINE Alu 3 292 -17 1499 185 60 11 chr6 42690074 42690238 -139725004 - AluJo SINE Alu -17 295 110 2160 101 35 3 chr6 42690238 42690526 -139724716 - AluSg SINE Alu -13 297 1 1499 185 60 11 chr6 42690526 42690642 -139724600 - AluJo SINE Alu -202 110 1 2285 117 0 22 chr6 42690846 42691163 -139724079 + AluSx SINE Alu 1 310 -2 1398 92 0 0 chr6 42691567 42691741 -139723501 + AluSp SINE Alu 133 306 -7 212 322 14 70 chr6 42691793 42691936 -139723306 + L2 LINE L2 2919 3053 -219 2333 72 20 23 chr6 42691968 42692273 -139722969 - AluSp SINE Alu -9 304 1 2302 94 7 0 chr6 42692369 42692666 -139722576 - AluSq SINE Alu -13 300 2 252 284 49 0 chr6 42693755 42693836 -139721406 - L2 LINE L2 0 3313 3229 1411 198 106 0 chr6 42693850 42694123 -139721119 - AluJb SINE Alu -10 302 1 2512 76 3 6 chr6 42694189 42694503 -139720739 - AluSq SINE Alu 0 313 1 190 0 0 62 chr6 42694506 42694538 -139720704 + (TTCCC)n Simple_repeat Simple_repeat 3 32 0 390 129 0 0 chr6 42694539 42694601 -139720641 + (TC)n Simple_repeat Simple_repeat 1 62 0 1687 140 48 41 chr6 42694587 42694880 -139720362 - AluSx SINE Alu -17 295 1 2084 141 0 0 chr6 42694911 42695209 -139720033 - AluJb SINE Alu -14 298 1 2275 107 3 7 chr6 42695216 42695524 -139719718 - AluSq SINE Alu -6 307 1 346 244 137 8 chr6 42695786 42695917 -139719325 - MIR SINE MIR -93 169 22 2271 100 3 3 chr6 42695943 42696242 -139719000 + AluSq SINE Alu 1 299 -14 2231 105 7 3 chr6 42696377 42696672 -139718570 - AluSq SINE Alu -17 296 1 449 157 25 25 chr6 42696675 42696796 -139718446 + CT-rich Low_complexity Low_complexity 2 122 0 1968 148 3 10 chr6 42696808 42697113 -139718129 + AluJb SINE Alu 1 303 -9 1773 167 4 4 chr6 42697116 42697391 -139717851 - AluJb SINE Alu -35 277 3 906 186 6 23 chr6 42697410 42697582 -139717660 - MLT1B LTR MaLR 0 390 222 260 0 0 0 chr6 42697579 42697607 -139717635 + tRNA-Cys-TGC tRNA tRNA 11 38 -37 * 1414 141 11 53 chr6 42697634 42697897 -139717345 - AluJo SINE Alu 0 312 61 2322 104 0 7 chr6 42697897 42698204 -139717038 - AluSx SINE Alu -7 305 1 1070 114 23 17 chr6 42698206 42698381 -139716861 - MLT1B LTR MaLR -214 176 1 195 291 103 60 chr6 42698481 42698598 -139716644 - L2 LINE L2 -15 3257 3136 898 186 57 11 chr6 42698602 42698779 -139716463 - MER5A DNA MER1_type -4 185 1 271 287 46 19 chr6 42699066 42699174 -139716068 + MIR SINE MIR 46 156 -106 614 187 0 9 chr6 42699177 42699284 -139715958 + FLAM_C SINE Alu 11 116 -27 529 85 195 0 chr6 42699302 42699384 -139715858 - FRAM SINE Alu -25 151 54 199 368 53 11 chr6 42699796 42699891 -139715351 - MIR SINE MIR -94 114 16 3180 137 55 2 chr6 42699912 42700438 -139714804 - L1MB3 LINE L1 0 6183 5630 1705 128 6 100 chr6 42700967 42701296 -139713946 + AluJo SINE Alu 1 298 -14 1730 175 7 0 chr6 42701403 42701689 -139713553 - AluJb SINE Alu -24 288 1 382 244 42 0 chr6 42701734 42701853 -139713389 - MIR SINE MIR -26 236 113 506 286 49 42 chr6 42701881 42702189 -139713053 + L3 LINE CR1 1257 1566 -11 2646 253 67 33 chr6 42703269 42704493 -139710749 - L2 LINE L2 -1 3312 2055 185 324 15 0 chr6 42705501 42705569 -139709673 + MIR3 SINE MIR 137 205 -3 811 260 35 13 chr6 42706036 42706263 -139708979 + MIR SINE MIR 2 233 -29 393 158 53 0 chr6 42706798 42706874 -139708368 - MER116 DNA Mariner 0 80 1 585 181 76 85 chr6 42706904 42707125 -139708117 - MIR SINE MIR -37 225 1 6465 122 35 13 chr6 42711156 42711315 -139703927 + Tigger1 DNA MER2_type 26 180 -2238 2414 65 0 0 chr6 42711315 42711632 -139703610 - AluY SINE Alu 0 317 1 6465 122 35 13 chr6 42711632 42712452 -139702790 + Tigger1 DNA MER2_type 180 1027 -1391 26 0 0 0 chr6 42712452 42712478 -139702764 + AT_rich Low_complexity Low_complexity 1 26 0 1036 185 44 56 chr6 42712482 42712731 -139702511 - AluJo SINE Alu -66 246 1 3256 118 23 16 chr6 42712731 42713216 -139702026 + Tigger1 DNA MER2_type 1011 1498 -920 987 95 15 0 chr6 42713217 42713354 -139701888 + Tigger1 DNA MER2_type 1832 1970 -448 1920 163 0 10 chr6 42713355 42713661 -139701581 - AluJo SINE Alu -9 303 1 23 0 0 0 chr6 42713672 42713695 -139701547 + AT_rich Low_complexity Low_complexity 1 23 0 665 111 0 0 chr6 42713991 42714081 -139701161 - THE1B LTR MaLR -80 284 195 * 2056 125 16 10 chr6 42714066 42714371 -139700871 + Tigger1 DNA MER2_type 1931 2237 -181 892 209 0 0 chr6 42714374 42714537 -139700705 + FRAM SINE Alu 4 166 0 293 105 0 0 chr6 42714574 42714612 -139700630 - Alu SINE Alu -18 284 247 1667 184 7 4 chr6 42714623 42714901 -139700341 - AluJo SINE Alu -30 282 4 383 149 9 103 chr6 42714921 42715028 -139700214 - L1MC5 LINE L1 -158 7803 7707 195 129 0 0 chr6 42715037 42715068 -139700174 + (CA)n Simple_repeat Simple_repeat 2 32 0 2055 141 7 0 chr6 42715084 42715381 -139699861 - AluJb SINE Alu -13 299 1 334 235 188 29 chr6 42715381 42715551 -139699691 - L1MC5 LINE L1 -254 7707 7511 4015 53 2 2 chr6 42715973 42716462 -139698780 + L1PA7 LINE L1 5666 6154 0 586 295 65 61 chr6 42716482 42716794 -139698448 - L1ME4a LINE L1 -80 6041 5732 2638 53 0 0 chr6 42716794 42717098 -139698144 - AluY SINE Alu -7 304 1 586 295 65 61 chr6 42717098 42717552 -139697690 - L1ME4a LINE L1 -389 5732 5263 360 188 12 12 chr6 42717588 42717668 -139697574 + MER116 DNA Mariner 1 80 0 255 191 0 0 chr6 42717751 42717798 -139697444 - L2 LINE L2 0 3313 3267 2227 108 10 0 chr6 42717981 42718278 -139696964 + AluSx SINE Alu 1 300 -12 25 0 0 28 chr6 42718474 42718495 -139696747 + AT_rich Low_complexity Low_complexity 1 22 -13 1958 158 3 3 chr6 42718495 42718798 -139696444 - AluSx SINE Alu -9 303 1 25 0 0 28 chr6 42718798 42718812 -139696430 + AT_rich Low_complexity Low_complexity 22 35 0 1628 174 22 16 chr6 42718936 42719253 -139695989 - L1MB1 LINE L1 0 6168 5850 2096 181 40 9 chr6 42719362 42719783 -139695459 - L1MB8 LINE L1 0 6178 5745 1664 257 69 4 chr6 42720914 42721366 -139693876 - MLT1J LTR MaLR -3 508 28 189 371 132 19 chr6 42721462 42721834 -139693408 + L2 LINE L2 2428 2841 -473 373 263 10 10 chr6 42722321 42722420 -139692822 - L2 LINE L2 -3 3310 3212 1656 231 75 25 chr6 42722420 42722930 -139692312 + L1ME2 LINE L1 5630 6164 0 407 239 39 77 chr6 42722941 42723175 -139692067 - L2 LINE L2 -109 3204 2980 861 171 82 112 chr6 42723432 42723655 -139691587 - L1ME3A LINE L1 -5 6165 5950 2484 63 0 10 chr6 42723655 42723957 -139691285 - AluY SINE Alu -12 299 1 861 171 82 112 chr6 42723957 42724002 -139691240 - L1ME3A LINE L1 -220 5950 5905 2375 102 0 10 chr6 42725478 42725791 -139689451 - AluSg SINE Alu 0 310 1 274 193 18 156 chr6 42726908 42726965 -139688277 - MLT1J LTR MaLR 0 511 474 896 144 8 0 chr6 42726965 42727097 -139688145 + FLAM_C SINE Alu 1 133 0 274 193 18 156 chr6 42727097 42727148 -139688094 - MLT1J LTR MaLR -37 474 418 911 225 37 16 chr6 42727164 42727408 -139687834 - MIR SINE MIR -6 256 8 230 211 149 70 chr6 42727413 42727527 -139687715 - MLT1J LTR MaLR -79 432 310 343 194 33 50 chr6 42728071 42728251 -139686991 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 * 486 242 6 17 chr6 42728192 42728370 -139686872 + (TA)n Simple_repeat Simple_repeat 1 176 0 254 203 14 29 chr6 42728419 42728488 -139686754 + A-rich Low_complexity Low_complexity 2 69 0 2124 131 3 0 chr6 42728522 42728819 -139686423 + AluSq SINE Alu 1 298 -15 272 266 104 13 chr6 42728974 42729128 -139686114 - L1ME4a LINE L1 -9 6112 5945 262 220 0 0 chr6 42729248 42729298 -139685944 - MIR SINE MIR -22 240 191 2179 137 0 3 chr6 42729524 42729837 -139685405 + AluJb SINE Alu 1 312 0 558 199 35 76 chr6 42730240 42730411 -139684831 + MER103 DNA DNA 2 165 -1 2139 137 0 0 chr6 42731342 42731642 -139683600 + AluJo SINE Alu 1 300 -12 1686 146 47 0 chr6 42733420 42733673 -139681569 + AluJb SINE Alu 1 265 -47 1811 104 4 0 chr6 42733806 42734047 -139681195 + AluSx SINE Alu 58 299 -13 312 292 71 9 chr6 42734105 42734218 -139681024 - MER5A DNA MER1_type -8 181 62 235 279 77 19 chr6 42734138 42734242 -139681000 + MER5A DNA MER1_type 52 161 -28 * 374 135 19 67 chr6 42734293 42734397 -139680845 - L1MC5 LINE L1 -50 7911 7813 268 226 119 12 chr6 42734489 42734573 -139680669 + L2 LINE L2 3208 3300 -13 22 35 0 0 chr6 42734574 42734603 -139680639 + AT_rich Low_complexity Low_complexity 1 29 0 1991 120 11 4 chr6 42734613 42734915 -139680327 + AluSq SINE Alu 11 314 0 216 0 0 0 chr6 42735666 42735690 -139679552 + (A)n Simple_repeat Simple_repeat 1 24 0 237 33 0 0 chr6 42735781 42735811 -139679431 + (TG)n Simple_repeat Simple_repeat 2 31 0 2266 97 0 0 chr6 42736548 42736837 -139678405 + AluSg SINE Alu 1 289 -21 2412 92 3 6 chr6 42736876 42737190 -139678052 + AluSq SINE Alu 1 313 0 2291 96 0 0 chr6 42737878 42738171 -139677071 + AluY SINE Alu 1 293 -18 22 0 0 0 chr6 42738613 42738635 -139676607 + AT_rich Low_complexity Low_complexity 1 22 0 2441 97 0 0 chr6 42738854 42739163 -139676079 + AluSg SINE Alu 1 309 -1 1955 130 67 0 chr6 42739182 42739467 -139675775 - AluSg SINE Alu -6 304 1 473 232 171 18 chr6 42739473 42739637 -139675605 - MER5A DNA MER1_type 0 189 1 2291 112 0 7 chr6 42739842 42740147 -139675095 - AluSx SINE Alu -9 303 1 2260 93 0 0 chr6 42740327 42740617 -139674625 + AluSc SINE Alu 3 292 -17 1476 185 60 11 chr6 42740763 42740927 -139674315 - AluJo SINE Alu -17 295 110 2136 101 35 3 chr6 42740927 42741215 -139674027 - AluSg SINE Alu -13 297 1 1476 185 60 11 chr6 42741215 42741331 -139673911 - AluJo SINE Alu -202 110 1 2245 117 0 22 chr6 42741535 42741851 -139673391 + AluSx SINE Alu 1 309 -3 1385 86 0 0 chr6 42742255 42742429 -139672813 + AluSp SINE Alu 133 306 -7 2316 72 20 23 chr6 42742656 42742961 -139672281 - AluSp SINE Alu -9 304 1 2281 92 0 3 chr6 42743060 42743354 -139671888 - AluSg SINE Alu -16 294 2 225 306 0 0 chr6 42744441 42744513 -139670729 - L2 LINE L2 0 3313 3242 1371 198 106 0 chr6 42744536 42744809 -139670433 - AluJb SINE Alu -10 302 1 2490 76 3 6 chr6 42744873 42745187 -139670055 - AluSq SINE Alu 0 313 1 190 0 0 62 chr6 42745190 42745222 -139670020 + (TTCCC)n Simple_repeat Simple_repeat 3 32 0 369 62 0 0 chr6 42745223 42745271 -139669971 + (TC)n Simple_repeat Simple_repeat 1 48 0 1687 140 48 41 chr6 42745271 42745564 -139669678 - AluSx SINE Alu -17 295 1 2084 141 0 0 chr6 42745595 42745893 -139669349 - AluJb SINE Alu -14 298 1 2247 110 3 7 chr6 42745900 42746208 -139669034 - AluSq SINE Alu -6 307 1 346 244 137 8 chr6 42746470 42746601 -139668641 - MIR SINE MIR -93 169 22 2271 100 3 3 chr6 42746627 42746926 -139668316 + AluSq SINE Alu 1 299 -14 2231 105 7 3 chr6 42747061 42747356 -139667886 - AluSq SINE Alu -17 296 1 449 157 25 25 chr6 42747359 42747480 -139667762 + CT-rich Low_complexity Low_complexity 2 122 0 1958 148 3 10 chr6 42747492 42747797 -139667445 + AluJb SINE Alu 1 303 -9 1773 167 4 4 chr6 42747800 42748075 -139667167 - AluJb SINE Alu -35 277 3 906 186 6 23 chr6 42748094 42748266 -139666976 - MLT1B LTR MaLR 0 390 222 260 0 0 0 chr6 42748263 42748291 -139666951 + tRNA-Cys-TGC tRNA tRNA 11 38 -37 * 1414 141 11 53 chr6 42748317 42748580 -139666662 - AluJo SINE Alu 0 312 61 2305 108 0 7 chr6 42748580 42748887 -139666355 - AluSx SINE Alu -7 305 1 1070 114 23 17 chr6 42748889 42749064 -139666178 - MLT1B LTR MaLR -214 176 1 195 291 103 60 chr6 42749164 42749281 -139665961 - L2 LINE L2 -15 3257 3136 898 186 57 11 chr6 42749285 42749462 -139665780 - MER5A DNA MER1_type -4 185 1 271 287 46 19 chr6 42749749 42749857 -139665385 + MIR SINE MIR 46 156 -106 638 178 0 9 chr6 42749860 42749967 -139665275 + FLAM_C SINE Alu 11 116 -27 557 198 0 0 chr6 42749985 42750096 -139665146 - FLAM_C SINE Alu -22 121 11 2071 146 0 25 chr6 42750341 42750657 -139664585 - AluSx SINE Alu -2 310 3 329 294 52 64 chr6 42750783 42751109 -139664133 + L1PA8A LINE L1 5497 5818 -313 * 1386 275 42 59 chr6 42750816 42751460 -139663782 + L1ME3A LINE L1 5521 6153 -17 460 296 35 18 chr6 42751465 42751634 -139663608 + L1ME3A LINE L1 5483 5654 -516 277 224 15 15 chr6 42751649 42751716 -139663526 + MER112 DNA MER1_type 1 67 -193 271 169 52 65 chr6 42751785 42751862 -139663380 + MER112 DNA MER1_type 94 169 -91 1765 149 90 34 chr6 42751906 42752228 -139663014 + MLT1A1 LTR MaLR 1 340 -25 527 186 10 0 chr6 42752241 42752343 -139662899 - U13 snRNA snRNA 0 104 2 312 100 0 0 chr6 42752348 42752388 -139662854 + MLT1A1 LTR MaLR 326 365 0 293 220 99 0 chr6 42752568 42752659 -139662583 + L1ME3A LINE L1 5863 5962 -208 22 94 0 0 chr6 42752784 42752848 -139662394 + AT_rich Low_complexity Low_complexity 1 64 0 1239 208 62 50 chr6 42752849 42752931 -139662311 + MER58B DNA MER1_type 1 81 -2339 2404 80 3 7 chr6 42752931 42753230 -139662012 - AluSp SINE Alu -15 298 1 1239 208 62 50 chr6 42753230 42753484 -139661758 + MER58B DNA MER1_type 81 341 0 219 69 0 0 chr6 42753488 42753517 -139661725 + (CATA)n Simple_repeat Simple_repeat 4 32 0 233 266 0 0 chr6 42753519 42753583 -139661659 - L1MC4 LINE L1 -1339 6703 6640 297 128 0 0 chr6 42753602 42753649 -139661593 + (TG)n Simple_repeat Simple_repeat 1 47 0 189 0 0 0 chr6 42753649 42753670 -139661572 + (TA)n Simple_repeat Simple_repeat 2 22 0 1936 134 11 3 chr6 42753670 42753954 -139661288 - AluJb SINE Alu -17 295 10 22 0 0 0 chr6 42753968 42753990 -139661252 + AT_rich Low_complexity Low_complexity 1 22 0 546 178 20 0 chr6 42755129 42755230 -139660012 + MER5A DNA MER1_type 12 114 -75 560 224 35 0 chr6 42755697 42755813 -139659429 - L2 LINE L2 -1 3312 3193 1869 139 27 40 chr6 42755819 42756157 -139659085 - MER1B DNA MER1_type 0 339 7 244 200 75 38 chr6 42756162 42756242 -139659000 - L2 LINE L2 -141 3172 3090 * 797 266 72 45 chr6 42756221 42756422 -139658820 - L2 LINE L2 -418 2896 2681 1678 181 3 10 chr6 42756422 42756721 -139658521 + AluJb SINE Alu 1 297 -15 797 266 72 45 chr6 42756721 42756853 -139658389 - L2 LINE L2 -633 2681 2554 189 0 0 0 chr6 42757764 42757785 -139657457 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 784 131 0 58 chr6 42760040 42760177 -139655065 - FLAM_C SINE Alu 0 133 5 491 284 76 40 chr6 42760726 42760951 -139654291 + MIR SINE MIR 28 260 -2 3181 146 23 23 chr6 42761479 42762055 -139653187 - L1MB7 LINE L1 0 6184 5609 1923 139 27 7 chr6 42762182 42762476 -139652766 + AluSx SINE Alu 4 303 -9 2094 109 3 40 chr6 42762576 42762880 -139652362 - AluSx SINE Alu -19 293 1 927 150 7 0 chr6 42762880 42763020 -139652222 - AluJo SINE Alu -171 141 1 2153 106 0 7 chr6 42764113 42764421 -139650821 - AluSc SINE Alu 0 306 1 1778 142 8 0 chr6 42764835 42765126 -139650116 - AluSp SINE Alu 0 315 23 181 261 0 0 chr6 42766525 42766571 -139648671 - MIR SINE MIR -6 256 211 244 277 168 0 chr6 42766908 42767001 -139648241 - L1MC4a LINE L1 -1879 5929 5853 2275 100 0 3 chr6 42767001 42767300 -139647942 - AluSx SINE Alu -14 298 1 244 277 168 0 chr6 42767300 42767361 -139647881 - L1MC4a LINE L1 -1955 5853 5749 1757 204 7 0 chr6 42767468 42767772 -139647470 - AluJo SINE Alu -6 306 1 842 105 35 12 chr6 42767841 42768099 -139647143 + (TA)n Simple_repeat Simple_repeat 1 264 0 389 240 99 0 chr6 42768175 42768296 -139646946 - HAL1b LINE L1 -422 926 794 424 282 122 56 chr6 42768562 42768775 -139646467 - HAL1b LINE L1 -641 707 481 1494 155 33 8 chr6 42768811 42769056 -139646186 - AluJo SINE Alu -51 261 11 1236 282 15 13 chr6 42769274 42769664 -139645578 - L1ME3A LINE L1 -208 5962 5572 307 314 40 25 chr6 42769744 42769885 -139645357 - MIR SINE MIR -56 152 11 2343 101 7 0 chr6 42770707 42771015 -139644227 + AluSq SINE Alu 1 310 -3 2377 125 25 59 chr6 42771405 42771569 -139643673 + L1MC1 LINE L1 5910 6078 -255 2170 106 0 0 chr6 42771569 42771881 -139643361 + AluSx SINE Alu 2 313 0 2377 125 25 59 chr6 42771881 42772154 -139643088 + L1MC1 LINE L1 6078 6333 0 180 0 0 0 chr6 42772387 42772407 -139642835 + (T)n Simple_repeat Simple_repeat 1 20 0 524 239 34 0 chr6 42772417 42772534 -139642708 + L2 LINE L2 3188 3308 -5 1851 160 17 0 chr6 42772609 42772902 -139642340 - AluJb SINE Alu -14 298 1 1792 127 3 84 chr6 42772902 42773225 -139642017 - AluJb SINE Alu -15 297 1 630 260 135 87 chr6 42773342 42773757 -139641485 + MLT1L LTR MaLR 1 435 -180 457 279 64 7 chr6 42775057 42775197 -139640045 + MIR SINE MIR 65 212 -50 2133 111 4 4 chr6 42775310 42775590 -139639652 + AluSx SINE Alu 5 284 -28 388 297 155 46 chr6 42776040 42776259 -139638983 + MIR SINE MIR 4 246 -16 2377 119 0 0 chr6 42776491 42776802 -139638440 - AluSx SINE Alu -1 311 1 1613 125 156 0 chr6 42777186 42777442 -139637800 + AluSx SINE Alu 1 296 -6 1433 267 0 114 chr6 42777998 42778339 -139636903 - AluSx SINE Alu 0 302 1 853 242 92 36 chr6 42778339 42778420 -139636822 + MER113 DNA MER1_type? 116 191 -330 1616 165 20 37 chr6 42778420 42778717 -139636525 + AluJo SINE Alu 3 294 -18 853 242 92 36 chr6 42778717 42778994 -139636248 + MER113 DNA MER1_type? 191 494 -27 590 221 52 139 chr6 42779022 42779222 -139636020 - MLT1I LTR MaLR -41 368 207 1964 138 14 10 chr6 42779222 42779512 -139635730 + AluJb SINE Alu 4 294 -18 590 221 52 139 chr6 42779512 42779641 -139635601 - MLT1I LTR MaLR -202 207 68 389 218 116 20 chr6 42781777 42781924 -139633318 + MIR SINE MIR 95 255 -7 379 259 35 35 chr6 42784008 42784124 -139631118 - L2 LINE L2 0 3272 3157 426 272 87 40 chr6 42785250 42785423 -139629819 - MER5A DNA MER1_type 0 189 9 2381 91 3 22 chr6 42785887 42786066 -139629176 - AluSx SINE Alu 0 312 140 2049 138 0 0 chr6 42786066 42786357 -139628885 - AluSx SINE Alu -11 301 11 2381 91 3 22 chr6 42786357 42786495 -139628747 - AluSx SINE Alu -172 140 1 2577 45 0 0 chr6 42786892 42787183 -139628059 - AluY SINE Alu -14 297 7 1905 160 7 0 chr6 42787316 42787603 -139627639 + AluJb SINE Alu 1 289 -23 749 148 25 0 chr6 42787638 42787760 -139627482 - FLAM_C SINE Alu -17 126 2 260 317 0 48 chr6 42787778 42787882 -139627360 + L2 LINE L2 3172 3270 -2 2347 91 0 0 chr6 42787925 42788221 -139627021 + AluSg SINE Alu 1 296 -14 194 235 0 0 chr6 42788697 42788748 -139626494 + MIR SINE MIR 211 261 -1 2303 64 30 3 chr6 42788867 42789163 -139626079 - AluY SINE Alu -7 304 1 2545 56 0 0 chr6 42789165 42789468 -139625774 - AluY SINE Alu -8 303 1 1725 203 0 3 chr6 42789469 42789774 -139625468 - AluJo SINE Alu -6 306 3 2229 110 0 7 chr6 42789785 42790094 -139625148 - AluSg SINE Alu -3 307 1 1922 120 11 7 chr6 42790161 42790471 -139624771 + AluSx SINE Alu 1 311 0 687 172 9 9 chr6 42790612 42790728 -139624514 + FLAM_A SINE Alu 1 116 -17 2474 64 0 3 chr6 42790729 42791024 -139624218 - AluSc SINE Alu -15 294 1 2482 74 3 0 chr6 42791036 42791335 -139623907 - AluSp SINE Alu -13 300 1 2296 100 3 0 chr6 42791490 42791781 -139623461 + AluSx SINE Alu 1 292 -20 2308 95 0 0 chr6 42792709 42793005 -139622237 + AluSg SINE Alu 1 296 -14 2443 88 0 0 chr6 42793100 42793405 -139621837 + AluSg SINE Alu 1 305 -5 1913 144 0 16 chr6 42793655 42793961 -139621281 - AluJb SINE Alu -11 301 1 529 194 212 18 chr6 42794026 42794191 -139621051 + MIR SINE MIR 64 260 -2 351 44 0 0 chr6 42794560 42794605 -139620637 + (CA)n Simple_repeat Simple_repeat 1 45 0 2244 95 14 0 chr6 42795013 42795307 -139619935 + AluSc SINE Alu 1 298 -11 2356 110 0 0 chr6 42795335 42795644 -139619598 + AluY SINE Alu 1 309 -2 1578 150 12 75 chr6 42795760 42795801 -139619441 + AluJb SINE Alu 1 43 -269 2009 118 3 32 chr6 42795801 42796115 -139619127 + AluSx SINE Alu 1 305 -7 1578 150 12 75 chr6 42796115 42796220 -139619022 + AluJb SINE Alu 43 153 -159 2459 75 0 0 chr6 42796220 42796527 -139618715 + AluY SINE Alu 1 307 -4 1578 150 12 75 chr6 42796527 42796712 -139618530 + AluJb SINE Alu 153 312 0 849 106 81 0 chr6 42796724 42796847 -139618395 - FLAM_C SINE Alu -10 133 1 2307 93 10 6 chr6 42796874 42797185 -139618057 + AluSx SINE Alu 1 312 0 2615 59 0 0 chr6 42798108 42798412 -139616830 + AluY SINE Alu 1 304 -7 702 295 94 8 chr6 42798464 42798698 -139616544 - MIR SINE MIR -1 261 8 2442 86 0 13 chr6 42798857 42799160 -139616082 + AluSg SINE Alu 1 299 -11 213 291 146 53 chr6 42799574 42799725 -139615517 + MIR SINE MIR 30 194 -68 26 0 0 0 chr6 42800992 42801018 -139614224 + GC_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr6 42801065 42801111 -139614131 + GC_rich Low_complexity Low_complexity 1 46 0 233 257 40 20 chr6 42801119 42801267 -139613975 + (CCCCG)n Simple_repeat Simple_repeat 4 154 0 288 137 0 0 chr6 42801345 42801396 -139613846 + (CAG)n Simple_repeat Simple_repeat 3 53 0 204 172 0 0 chr6 42801551 42801609 -139613633 + (CCCCAG)n Simple_repeat Simple_repeat 3 60 0 27 49 0 0 chr6 42802004 42802045 -139613197 + GC_rich Low_complexity Low_complexity 1 41 0 201 39 0 0 chr6 42806105 42806131 -139609111 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 382 146 244 0 chr6 42806828 42806910 -139608332 - MER3 DNA MER1_type -107 102 1 1827 111 27 57 chr6 42807097 42807394 -139607848 - AluSg SINE Alu -21 289 2 2092 108 17 3 chr6 42807398 42807693 -139607549 - AluSx SINE Alu -13 299 1 1059 141 12 18 chr6 42807777 42807940 -139607302 + AluJo SINE Alu 105 266 -46 297 0 0 0 chr6 42807955 42807988 -139607254 + (CA)n Simple_repeat Simple_repeat 2 34 0 812 227 113 20 chr6 42808023 42808358 -139606884 - Charlie7 DNA MER1_type -2076 536 63 192 218 320 13 chr6 42809005 42809083 -139606159 + MIR SINE MIR 13 114 -148 1821 163 0 3 chr6 42809234 42809544 -139605698 + AluJb SINE Alu 5 313 0 2303 88 0 7 chr6 42809765 42810062 -139605180 + AluY SINE Alu 1 295 -16 2043 118 36 0 chr6 42810108 42810388 -139604854 + AluSx SINE Alu 1 290 -22 570 30 109 0 chr6 42810388 42810589 -139604653 + (TA)n Simple_repeat Simple_repeat 1 223 0 2134 148 0 0 chr6 42810592 42810889 -139604353 - AluSx SINE Alu -15 297 1 1953 134 38 0 chr6 42810891 42811182 -139604060 - AluSq SINE Alu -11 302 1 753 185 0 23 chr6 42811188 42811318 -139603924 - FLAM_C SINE Alu -6 127 1 244 303 0 0 chr6 42811393 42811459 -139603783 - L2 LINE L2 -205 3067 3002 1094 234 22 65 chr6 42811551 42811706 -139603536 + MER58B DNA MER1_type 1 161 -2259 1857 137 47 37 chr6 42811706 42812006 -139603236 + AluJo SINE Alu 1 303 -9 2076 138 7 0 chr6 42812008 42812304 -139602938 + AluSx SINE Alu 1 298 -14 243 0 0 0 chr6 42812304 42812331 -139602911 + (TA)n Simple_repeat Simple_repeat 1 27 0 1094 234 22 65 chr6 42812331 42812526 -139602716 + MER58B DNA MER1_type 160 340 -1 1548 145 39 115 chr6 42812553 42812740 -139602502 - AluJb SINE Alu 0 312 161 207 69 0 0 chr6 42812740 42812769 -139602473 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1548 145 39 115 chr6 42812769 42812919 -139602323 - AluJb SINE Alu -151 161 1 1099 72 92 0 chr6 42812941 42813094 -139602148 - AluSg/x SINE Alu -13 297 131 230 0 0 32 chr6 42813094 42813125 -139602117 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2186 85 0 51 chr6 42813125 42813420 -139601822 - AluY SINE Alu -31 280 1 503 201 24 218 chr6 42813465 42813615 -139601627 - MIR SINE MIR -1 261 84 2188 124 6 13 chr6 42813615 42813929 -139601313 - AluSx SINE Alu 0 312 1 714 163 16 23 chr6 42813931 42814060 -139601182 - FLAM_A SINE Alu -5 128 1 503 201 24 218 chr6 42814060 42814195 -139601047 - MIR SINE MIR -179 83 29 351 0 0 0 chr6 42814803 42814842 -139600400 + (TA)n Simple_repeat Simple_repeat 2 40 0 2080 114 24 3 chr6 42814842 42815123 -139600119 - AluSq SINE Alu -23 290 1 2034 129 34 0 chr6 42815290 42815585 -139599657 - AluSx SINE Alu -7 305 1 1515 146 14 51 chr6 42815608 42815738 -139599504 - AluJo SINE Alu -47 265 149 2471 61 0 7 chr6 42815738 42816034 -139599208 - AluY SINE Alu -17 294 1 1515 146 14 51 chr6 42816034 42816178 -139599064 - AluJo SINE Alu -163 149 1 817 183 0 0 chr6 42816188 42816314 -139598928 - AluJb SINE Alu -186 126 1 2137 106 0 3 chr6 42816396 42816713 -139598529 - AluSx SINE Alu 0 316 1 6808 93 35 8 chr6 42816727 42817846 -139597396 - L1MA2 LINE L1 0 6304 5162 2376 89 3 0 chr6 42817846 42818148 -139597094 - AluSx SINE Alu -9 303 1 337 233 263 22 chr6 42818365 42818597 -139596645 - LTR33 LTR ERVL -178 343 56 26 0 0 0 chr6 42818899 42818925 -139596317 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr6 42818989 42819015 -139596227 + (TC)n Simple_repeat Simple_repeat 2 27 0 926 153 0 0 chr6 42819039 42819176 -139596066 - FLAM_C SINE Alu 0 143 7 344 261 85 88 chr6 42819193 42819318 -139595924 - L1ME4a LINE L1 -224 5897 5773 1670 80 4 25 chr6 42819318 42819365 -139595877 + L1PA14 LINE L1 5928 5974 -187 2356 101 0 0 chr6 42819365 42819661 -139595581 + AluSx SINE Alu 1 296 -16 1670 80 4 25 chr6 42819661 42819850 -139595392 + L1PA14 LINE L1 5974 6159 -2 344 261 85 88 chr6 42819850 42819984 -139595258 - L1ME4a LINE L1 -348 5773 5639 49 18 0 0 chr6 42819984 42820040 -139595202 + AT_rich Low_complexity Low_complexity 1 56 0 1758 207 0 3 chr6 42820044 42820348 -139594894 - AluJo SINE Alu -9 303 1 186 43 0 0 chr6 42820359 42820382 -139594860 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 434 304 0 24 chr6 42820382 42820550 -139594692 + MLT1J LTR MaLR 58 221 -290 2379 107 0 19 chr6 42820626 42820945 -139594297 + AluSq SINE Alu 1 313 0 1894 165 7 10 chr6 42821011 42821308 -139593934 - AluJo SINE Alu -14 298 3 1710 197 7 0 chr6 42821497 42821807 -139593435 + AluJo SINE Alu 1 312 0 2018 130 43 13 chr6 42821946 42822247 -139592995 - AluSx SINE Alu -2 310 1 2206 126 3 0 chr6 42822289 42822591 -139592651 + AluSx SINE Alu 1 303 -9 1698 127 0 44 chr6 42822595 42822768 -139592474 - AluSx SINE Alu 0 306 147 2188 104 0 36 chr6 42822768 42823076 -139592166 - AluSg SINE Alu -13 297 1 1698 127 0 44 chr6 42823076 42823176 -139592066 - AluSx SINE Alu -159 147 44 2424 103 0 3 chr6 42823821 42824132 -139591110 - AluSx SINE Alu -2 310 1 1616 169 22 10 chr6 42824243 42824557 -139590685 - L1MC4a LINE L1 -806 7002 6685 792 185 28 46 chr6 42824552 42824768 -139590474 + L1PB4 LINE L1 2189 2400 -3746 * 6590 33 0 1 chr6 42824768 42825564 -139589678 + L1PA5 LINE L1 5380 6174 0 2272 82 7 0 chr6 42825564 42825878 -139589364 + AluY SINE Alu 1 316 0 1924 183 3 3 chr6 42825900 42826271 -139588971 + L1PB4 LINE L1 2386 2756 -3390 2017 123 14 4 chr6 42826271 42826599 -139588643 - AluSg SINE Alu 0 333 3 627 143 10 0 chr6 42826603 42826701 -139588541 - AluJb SINE Alu -16 296 198 3155 163 22 18 chr6 42826701 42827247 -139587995 + L1PB4 LINE L1 4671 5222 -934 1808 168 12 47 chr6 42827247 42827568 -139587674 + AluJo SINE Alu 1 310 -2 3155 163 22 18 chr6 42827568 42827823 -139587419 + L1PB4 LINE L1 5222 5474 -682 22 0 0 30 chr6 42827825 42827845 -139587397 + AT_rich Low_complexity Low_complexity 1 21 -11 2060 148 52 16 chr6 42827845 42827972 -139587270 + L1PB4 LINE L1 5767 5888 -268 2030 116 55 0 chr6 42827972 42828264 -139586978 + AluSx SINE Alu 2 309 -3 2060 148 52 16 chr6 42828264 42828500 -139586742 + L1PB4 LINE L1 5888 6143 -13 22 0 0 30 chr6 42828500 42828512 -139586730 + AT_rich Low_complexity Low_complexity 21 32 0 2549 64 0 0 chr6 42828522 42828819 -139586423 + AluY SINE Alu 3 299 -12 576 207 0 22 chr6 42828819 42828954 -139586288 - L1MC4 LINE L1 -1265 6777 6646 510 309 45 17 chr6 42829132 42829310 -139585932 + MIR3 SINE MIR 1 183 -25 2187 119 0 0 chr6 42829352 42829647 -139585595 - AluSg SINE Alu -15 295 1 274 290 39 127 chr6 42829976 42830362 -139584880 + L2 LINE L2 2828 3179 -93 477 278 90 0 chr6 42830367 42830500 -139584742 + MIR SINE MIR 117 261 -1 2000 155 7 0 chr6 42830777 42831080 -139584162 + AluJo SINE Alu 1 305 -7 306 214 12 36 chr6 42831309 42831393 -139583849 - LTR33A LTR ERVL 0 523 442 714 263 47 121 chr6 42831784 42831834 -139583408 + L2 LINE L2 2813 2865 -448 2215 114 0 3 chr6 42831834 42832131 -139583111 - AluSq SINE Alu -13 300 5 714 263 47 121 chr6 42832131 42832617 -139582625 + L2 LINE L2 2865 3309 -4 251 313 83 0 chr6 42832717 42832813 -139582429 + L2 LINE L2 3169 3272 0 878 115 0 101 chr6 42833142 42833290 -139581952 - FLAM_C SINE Alu 0 133 1 583 214 9 6 chr6 42833681 42834034 -139581208 + (CA)n Simple_repeat Simple_repeat 1 354 0 981 136 0 6 chr6 42834070 42834232 -139581010 + L1PA15 LINE L1 5870 6030 -135 2322 119 0 0 chr6 42834241 42834552 -139580690 + AluSx SINE Alu 1 311 -1 252 128 0 0 chr6 42834553 42834600 -139580642 + L1PA15 LINE L1 6119 6165 0 1545 137 126 11 chr6 42834982 42835252 -139579990 + AluJb SINE Alu 1 301 -1 1828 156 12 40 chr6 42835720 42835904 -139579338 - AluJo SINE Alu 0 312 139 1852 124 47 20 chr6 42835904 42836203 -139579039 - AluSx SINE Alu -5 307 1 1828 156 12 40 chr6 42836203 42836339 -139578903 - AluJo SINE Alu -173 139 1 438 319 72 38 chr6 42836341 42836604 -139578638 + L2 LINE L2 2968 3239 -33 1921 125 60 0 chr6 42836965 42837246 -139577996 + AluSx SINE Alu 1 298 -14 1805 267 67 23 chr6 42837259 42838168 -139577074 - L2 LINE L2 -1 3312 2344 2304 95 0 0 chr6 42838180 42838498 -139576744 - AluSq SINE Alu 0 318 1 26 30 0 0 chr6 42838508 42838541 -139576701 + AT_rich Low_complexity Low_complexity 1 33 0 1020 169 12 0 chr6 42838546 42838706 -139576536 + FRAM SINE Alu 1 162 -4 715 208 26 0 chr6 42838711 42838865 -139576377 + MLT1E LTR MaLR 436 593 0 847 145 0 36 chr6 42838920 42839058 -139576184 + FLAM_C SINE Alu 1 133 0 522 288 101 52 chr6 42839068 42839394 -139575848 - MLT1F LTR MaLR -200 342 1 1300 269 114 0 chr6 42839394 42839885 -139575357 - L2 LINE L2 -1012 2302 1756 228 322 122 17 chr6 42840542 42840657 -139574585 + MIR3 SINE MIR 36 162 -46 279 157 0 181 chr6 42840761 42840844 -139574398 + MER20 DNA MER1_type 2 69 -150 2364 92 0 0 chr6 42840875 42841181 -139574061 - AluY SINE Alu -5 306 1 357 43 0 0 chr6 42841182 42841229 -139574013 + (TG)n Simple_repeat Simple_repeat 2 48 0 2249 94 0 0 chr6 42841229 42841515 -139573727 - AluSx SINE Alu -26 286 1 752 220 69 6 chr6 42841532 42841705 -139573537 - MER3 DNA MER1_type -24 185 2 238 246 15 31 chr6 42842755 42842820 -139572422 + MIR SINE MIR 28 91 -117 1686 145 21 54 chr6 42843745 42843863 -139571379 - L1MB4 LINE L1 -12 6168 6048 2167 132 3 0 chr6 42843863 42844166 -139571076 - AluSx SINE Alu -8 304 1 1686 145 21 54 chr6 42844166 42844379 -139570863 - L1MB4 LINE L1 -132 6048 5848 227 329 7 51 chr6 42844696 42844833 -139570409 + L2 LINE L2 2550 2680 -634 * 252 338 13 0 chr6 42844831 42844908 -139570334 - L2 LINE L2 -4 3268 3191 1866 97 35 19 chr6 42844982 42845240 -139570002 + AluSg SINE Alu 49 310 0 388 297 92 38 chr6 42845347 42845532 -139569710 - L2 LINE L2 -212 3060 2866 351 0 0 0 chr6 42845634 42845673 -139569569 + (TG)n Simple_repeat Simple_repeat 1 39 0 2103 130 0 0 chr6 42845711 42846018 -139569224 - AluSx SINE Alu 0 307 1 330 313 0 9 chr6 42846019 42846131 -139569111 - L2 LINE L2 -601 2713 2603 1373 204 70 58 chr6 42846313 42846657 -139568585 + MLT1A1 LTR MaLR 1 348 -17 2179 113 0 0 chr6 42846661 42846945 -139568297 + AluSx SINE Alu 11 294 -18 1893 138 7 30 chr6 42847809 42848113 -139567129 - AluSx SINE Alu -11 301 5 566 221 110 0 chr6 42848907 42849061 -139566181 + MER5B DNA MER1_type 2 172 -6 1990 147 31 0 chr6 42849099 42849385 -139565857 + AluJb SINE Alu 1 295 -17 229 201 110 72 chr6 42849570 42849779 -139565463 + L1M4 LINE L1 2952 3168 -2978 347 327 34 48 chr6 42850258 42850466 -139564776 + L1MEd LINE L1 561 765 -5354 1887 140 12 29 chr6 42850588 42850831 -139564411 - L1MB2 LINE L1 -15 6156 5919 2426 84 0 0 chr6 42850831 42851127 -139564115 - AluSx SINE Alu -16 296 1 1887 140 12 29 chr6 42851127 42851225 -139564017 - L1MB2 LINE L1 -252 5919 5821 812 254 70 41 chr6 42851234 42851301 -139563941 + L1MEd LINE L1 817 881 -5238 6966 126 52 38 chr6 42851301 42852561 -139562681 - MER52C LTR ERV1 0 1278 1 812 254 70 41 chr6 42852561 42853008 -139562234 + L1MEd LINE L1 881 1257 -4862 2260 112 3 0 chr6 42853154 42853448 -139561794 - AluSx SINE Alu -17 295 1 1303 190 3 99 chr6 42853450 42853580 -139561662 - AluJo SINE Alu -3 309 168 2384 80 3 7 chr6 42853580 42853879 -139561363 - AluSx SINE Alu -14 298 1 1303 190 3 99 chr6 42853879 42853957 -139561285 - AluJo SINE Alu -144 168 142 2468 81 3 0 chr6 42853957 42854265 -139560977 + AluY SINE Alu 1 309 -2 1303 190 3 99 chr6 42854265 42854387 -139560855 - AluJo SINE Alu -170 142 10 1618 150 19 84 chr6 42854537 42854857 -139560385 + AluSx SINE Alu 1 299 -13 723 268 114 9 chr6 42855310 42855538 -139559704 + MLT1J LTR MaLR 3 254 -257 300 185 25 37 chr6 42855595 42855676 -139559566 + MLT1J1 LTR MaLR 355 434 -12 240 35 0 0 chr6 42855881 42855910 -139559332 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2649 41 0 16 chr6 42855922 42856237 -139559005 - AluY SINE Alu -1 310 1 1889 82 74 26 chr6 42856237 42856506 -139558736 - AluSx SINE Alu -30 282 1 25 65 0 0 chr6 42856563 42856609 -139558633 + AT_rich Low_complexity Low_complexity 1 46 0 211 352 9 28 chr6 42856632 42856740 -139558502 - MIR SINE MIR -125 137 32 216 297 0 16 chr6 42856962 42857026 -139558216 + T-rich Low_complexity Low_complexity 1 63 0 2287 104 3 16 chr6 42857080 42857389 -139557853 - AluSg SINE Alu -5 305 1 834 188 0 0 chr6 42857755 42857888 -139557354 + FLAM_A SINE Alu 1 133 0 2228 116 0 0 chr6 42858062 42858346 -139556896 + AluSx SINE Alu 1 284 -28 2563 60 0 0 chr6 42858356 42858654 -139556588 + AluY SINE Alu 1 298 -13 186 43 0 0 chr6 42858657 42858680 -139556562 + (TAA)n Simple_repeat Simple_repeat 2 24 0 225 227 0 0 chr6 42858680 42858724 -139556518 - L2 LINE L2 -14 3258 3215 2692 30 3 0 chr6 42858976 42859281 -139555961 - AluY SINE Alu -5 306 1 2277 221 31 38 chr6 42859412 42859964 -139555278 - MLT1E2 LTR MaLR -3 623 76 2022 128 51 56 chr6 42860006 42860396 -139554846 + MLT1B LTR MaLR 1 388 -2 194 61 0 30 chr6 42860579 42860612 -139554630 + (TTG)n Simple_repeat Simple_repeat 2 33 0 195 42 0 0 chr6 42860679 42860703 -139554539 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 2024 118 7 33 chr6 42860706 42861010 -139554232 - AluSx SINE Alu -16 296 1 2328 91 7 0 chr6 42861033 42861330 -139553912 + AluY SINE Alu 1 299 -12 209 87 43 22 chr6 42861368 42861414 -139553828 + (TTATA)n Simple_repeat Simple_repeat 4 50 0 330 194 0 15 chr6 42861555 42861622 -139553620 + MER5A DNA MER1_type 61 126 -63 202 296 0 14 chr6 42861618 42861689 -139553553 + L2 LINE L2 1103 1172 -2142 * 881 74 0 0 chr6 42862006 42862153 -139553089 - AluY SINE Alu 0 319 173 193 305 13 78 chr6 42862170 42862324 -139552918 + L2 LINE L2 1220 1363 -1951 463 304 117 50 chr6 42862410 42862963 -139552279 + L2 LINE L2 1966 2565 -749 1623 187 60 31 chr6 42862963 42863316 -139551926 - MLT1A1 LTR MaLR -2 363 1 463 304 117 50 chr6 42863316 42863367 -139551875 + L2 LINE L2 2565 2611 -703 2341 85 8 92 chr6 42863379 42863406 -139551836 + MER47A DNA MER2_type 1 29 -2294 285 100 0 0 chr6 42863406 42863456 -139551786 + (CTAA)n Simple_repeat Simple_repeat 1 50 0 2341 85 8 92 chr6 42863456 42863743 -139551499 + MER47A DNA MER2_type 29 276 -2047 2214 118 7 0 chr6 42863743 42864040 -139551202 - AluSx SINE Alu -13 299 1 2341 85 8 92 chr6 42864040 42864124 -139551118 + MER47A DNA MER2_type 276 366 0 1140 155 0 0 chr6 42864230 42864398 -139550844 + AluSg/x SINE Alu 135 302 -8 283 303 84 22 chr6 42864404 42864582 -139550660 + HAL1 LINE L1 2318 2506 -1 1583 174 29 68 chr6 42864930 42865000 -139550242 - MLT1A1 LTR MaLR 0 365 294 2505 72 0 3 chr6 42865000 42865306 -139549936 - AluY SINE Alu -6 305 1 1583 174 29 68 chr6 42865306 42865615 -139549627 - MLT1A1 LTR MaLR -71 294 1 32 19 0 37 chr6 42865772 42865810 -139549432 + AT_rich Low_complexity Low_complexity 1 38 -14 828 119 0 8 chr6 42865810 42865928 -139549314 - FLAM_C SINE Alu -16 117 1 32 19 0 37 chr6 42865928 42865943 -139549299 + AT_rich Low_complexity Low_complexity 38 52 0 232 303 184 9 chr6 42866180 42866289 -139548953 + MIR SINE MIR 16 143 -119 1086 247 106 57 chr6 42866321 42866831 -139548411 - MLT1F1 LTR MaLR -8 559 25 302 275 80 22 chr6 42867287 42867425 -139547817 + L1ME2 LINE L1 5765 5910 -254 497 221 0 0 chr6 42867825 42867920 -139547322 + MIR SINE MIR 149 243 -19 453 288 41 72 chr6 42868025 42868405 -139546837 + MLT1L LTR MaLR 1 451 -164 468 169 25 144 chr6 42868459 42868489 -139546753 + HsTC2 DNA Tc2 1707 1739 -159 2087 115 17 7 chr6 42868489 42868784 -139546458 + AluSx SINE Alu 1 298 -14 468 169 25 144 chr6 42868784 42868847 -139546395 + HsTC2 DNA Tc2 1739 1808 -90 1840 137 52 0 chr6 42868847 42869157 -139546085 + AluJb SINE Alu 1 324 0 468 169 25 144 chr6 42869157 42869276 -139545966 + HsTC2 DNA Tc2 1808 1898 0 515 128 0 23 chr6 42869467 42869553 -139545689 + FLAM_C SINE Alu 55 138 -5 341 228 33 11 chr6 42869553 42869645 -139545597 - MLT1L LTR MaLR -14 601 508 1889 205 56 45 chr6 42869771 42870134 -139545108 - MLT1F LTR MaLR 0 542 170 180 0 0 0 chr6 42870134 42870154 -139545088 + (GA)n Simple_repeat Simple_repeat 1 20 0 1889 205 56 45 chr6 42870154 42870326 -139544916 - MLT1F LTR MaLR -372 170 1 1143 146 109 0 chr6 42870740 42870932 -139544310 - AluJo SINE Alu -13 299 87 21 0 0 0 chr6 42871647 42871668 -139543574 + AT_rich Low_complexity Low_complexity 1 21 0 454 216 98 106 chr6 42872457 42872711 -139542531 - MLT1L LTR MaLR -229 386 135 405 320 79 20 chr6 42872862 42873065 -139542177 + MLT1J LTR MaLR 32 246 -265 921 163 0 78 chr6 42873068 42873234 -139542008 - LTR8A LTR ERV1 0 727 575 1218 93 0 0 chr6 42873234 42873405 -139541837 - AluSp SINE Alu 0 305 135 2398 168 81 62 chr6 42873405 42873970 -139541272 - LTR8A LTR ERV1 -151 576 1 280 138 0 86 chr6 42874010 42874068 -139541174 + MLT1J LTR MaLR 415 467 -44 268 95 0 24 chr6 42874210 42874252 -139540990 - LTR67 LTR ERVL -23 534 494 198 118 0 0 chr6 42874410 42874444 -139540798 + (AGCTG)n Simple_repeat Simple_repeat 1 34 0 696 223 53 139 chr6 42874444 42874775 -139540467 - MLT1H LTR MaLR -143 406 105 710 248 38 119 chr6 42874874 42875294 -139539948 - LTR67 LTR ERVL -152 405 20 498 91 0 0 chr6 42875321 42875398 -139539844 + (GGA)n Simple_repeat Simple_repeat 3 79 0 2447 82 3 9 chr6 42875425 42875740 -139539502 - AluSp SINE Alu 0 313 1 232 135 0 0 chr6 42875860 42875897 -139539345 - MLT1L LTR MaLR -36 513 477 228 167 0 24 chr6 42876063 42876105 -139539137 - MLT1J2 LTR MaLR -298 152 112 1910 162 7 7 chr6 42876259 42876556 -139538686 + AluJb SINE Alu 1 297 -15 234 293 64 43 chr6 42876669 42876809 -139538433 + L2 LINE L2 2686 2828 -486 1338 228 47 84 chr6 42876879 42877019 -139538223 - LTR16C LTR ERVL -2 489 345 2316 97 0 0 chr6 42877019 42877309 -139537933 - AluSc SINE Alu -6 303 14 1338 228 47 84 chr6 42877309 42877572 -139537670 - LTR16C LTR ERVL -146 345 101 276 346 141 54 chr6 42877675 42877973 -139537269 + L2 LINE L2 2949 3272 0 323 220 132 0 chr6 42878182 42878273 -139536969 + MIR SINE MIR 42 144 -64 1017 218 201 28 chr6 42878428 42878822 -139536420 - MLT1D LTR MaLR 0 505 44 379 259 35 35 chr6 42930085 42930201 -139485041 - L2 LINE L2 0 3272 3157 426 272 87 40 chr6 42931327 42931500 -139483742 - MER5A DNA MER1_type 0 189 9 2374 89 3 22 chr6 42931964 42932140 -139483102 - AluSx SINE Alu -3 309 140 2049 138 0 0 chr6 42932140 42932431 -139482811 - AluSx SINE Alu -11 301 11 2374 89 3 22 chr6 42932431 42932569 -139482673 - AluSx SINE Alu -172 140 1 2616 47 0 0 chr6 42932966 42933263 -139481979 - AluY SINE Alu -14 297 1 2390 98 0 0 chr6 42933310 42933616 -139481626 + AluSq SINE Alu 1 306 -7 199 368 53 11 chr6 42933906 42934001 -139481241 - MIR SINE MIR -94 114 16 3183 137 55 2 chr6 42934022 42934548 -139480694 - L1MB3 LINE L1 0 6183 5630 1729 124 6 100 chr6 42935077 42935407 -139479835 + AluJo SINE Alu 1 299 -13 1813 128 0 49 chr6 42935532 42935837 -139479405 - AluJo SINE Alu -12 300 11 6440 123 35 13 chr6 42939552 42939711 -139475531 + Tigger1 DNA MER2_type 26 180 -2238 2414 65 0 0 chr6 42939711 42940025 -139475217 - AluY SINE Alu 0 314 1 6440 123 35 13 chr6 42940025 42940845 -139474397 + Tigger1 DNA MER2_type 180 1027 -1391 26 0 0 0 chr6 42940845 42940871 -139474371 + AT_rich Low_complexity Low_complexity 1 26 0 1029 181 44 56 chr6 42940875 42941124 -139474118 - AluJo SINE Alu -66 246 1 3256 118 23 16 chr6 42941124 42941609 -139473633 + Tigger1 DNA MER2_type 1011 1498 -920 987 95 15 0 chr6 42941610 42941747 -139473495 + Tigger1 DNA MER2_type 1832 1970 -448 1920 163 0 10 chr6 42941748 42942054 -139473188 - AluJo SINE Alu -9 303 1 23 0 0 0 chr6 42942065 42942088 -139473154 + AT_rich Low_complexity Low_complexity 1 23 0 665 111 0 0 chr6 42942384 42942474 -139472768 - THE1B LTR MaLR -80 284 195 * 2056 125 16 10 chr6 42942459 42942764 -139472478 + Tigger1 DNA MER2_type 1931 2237 -181 906 203 0 0 chr6 42942767 42942930 -139472312 + FRAM SINE Alu 4 166 0 293 105 0 0 chr6 42942967 42943005 -139472237 - Alu SINE Alu -18 284 247 1667 184 7 4 chr6 42943016 42943294 -139471948 - AluJo SINE Alu -30 282 4 383 149 9 103 chr6 42943314 42943421 -139471821 - L1MC5 LINE L1 -158 7803 7707 195 129 0 0 chr6 42943430 42943461 -139471781 + (CA)n Simple_repeat Simple_repeat 2 32 0 2063 141 7 0 chr6 42943477 42943775 -139471467 - AluJb SINE Alu -12 300 1 334 235 188 29 chr6 42943775 42943945 -139471297 - L1MC5 LINE L1 -254 7707 7511 4018 53 2 2 chr6 42944367 42944856 -139470386 + L1PA7 LINE L1 5666 6154 0 601 294 64 61 chr6 42944876 42945188 -139470054 - L1ME4a LINE L1 -80 6041 5732 2663 49 0 0 chr6 42945188 42945493 -139469749 - AluY SINE Alu -6 305 1 601 294 64 61 chr6 42945493 42945947 -139469295 - L1ME4a LINE L1 -389 5732 5263 360 188 12 12 chr6 42945983 42946063 -139469179 + MER116 DNA Mariner 1 80 0 255 191 0 0 chr6 42946146 42946193 -139469049 - L2 LINE L2 0 3313 3267 2259 104 10 0 chr6 42946376 42946674 -139468568 + AluSx SINE Alu 1 301 -11 385 316 97 22 chr6 42946674 42946994 -139468248 - L1ME4a LINE L1 -1075 5071 4728 1926 162 3 3 chr6 42947007 42947310 -139467932 - AluSx SINE Alu -9 303 1 1628 174 22 16 chr6 42947448 42947765 -139467477 - L1MB1 LINE L1 0 6168 5850 2096 181 40 9 chr6 42947874 42948295 -139466947 - L1MB8 LINE L1 0 6178 5745 1664 257 69 4 chr6 42949426 42949878 -139465364 - MLT1J LTR MaLR -3 508 28 189 371 132 19 chr6 42949974 42950346 -139464896 + L2 LINE L2 2428 2841 -473 373 263 10 10 chr6 42950833 42950932 -139464310 - L2 LINE L2 -3 3310 3212 1656 231 75 25 chr6 42950932 42951442 -139463800 + L1ME2 LINE L1 5630 6164 0 407 239 39 77 chr6 42951453 42951687 -139463555 - L2 LINE L2 -109 3204 2980 847 175 82 112 chr6 42951944 42952167 -139463075 - L1ME3A LINE L1 -5 6165 5950 2472 60 0 10 chr6 42952167 42952468 -139462774 - AluY SINE Alu -13 298 1 847 175 82 112 chr6 42952468 42952513 -139462729 - L1ME3A LINE L1 -220 5950 5905 2435 93 0 10 chr6 42953989 42954302 -139460940 - AluSg SINE Alu 0 310 1 301 180 9 162 chr6 42955419 42955476 -139459766 - MLT1J LTR MaLR 0 511 477 896 144 8 0 chr6 42955476 42955608 -139459634 + FLAM_C SINE Alu 1 133 0 301 180 9 162 chr6 42955608 42955661 -139459581 - MLT1J LTR MaLR -34 477 418 925 217 41 20 chr6 42955677 42955921 -139459321 - MIR SINE MIR -6 256 8 230 211 149 70 chr6 42955926 42956040 -139459202 - MLT1J LTR MaLR -79 432 310 343 194 33 50 chr6 42956584 42956764 -139458478 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 * 486 242 6 17 chr6 42956705 42956883 -139458359 + (TA)n Simple_repeat Simple_repeat 1 176 0 254 203 14 29 chr6 42956932 42957001 -139458241 + A-rich Low_complexity Low_complexity 2 69 0 2124 131 3 0 chr6 42957035 42957332 -139457910 + AluSq SINE Alu 1 298 -15 272 266 104 13 chr6 42957487 42957641 -139457601 - L1ME4a LINE L1 -9 6112 5945 273 200 0 0 chr6 42957761 42957811 -139457431 - MIR SINE MIR -22 240 191 2179 137 0 3 chr6 42958038 42958351 -139456891 + AluJb SINE Alu 1 312 0 558 199 35 76 chr6 42958754 42958925 -139456317 + MER103 DNA DNA 2 165 -1 2147 136 0 0 chr6 42959856 42960157 -139455085 + AluJo SINE Alu 1 301 -11 1686 146 47 0 chr6 42961935 42962188 -139453054 + AluJb SINE Alu 1 265 -47 1730 175 7 0 chr6 42962237 42962523 -139452719 - AluJb SINE Alu -24 288 1 382 244 42 0 chr6 42962568 42962687 -139452555 - MIR SINE MIR -26 236 113 506 286 49 42 chr6 42962715 42963023 -139452219 + L3 LINE CR1 1257 1566 -11 2646 253 67 33 chr6 42964103 42965327 -139449915 - L2 LINE L2 -1 3312 2055 185 358 0 0 chr6 42966334 42966401 -139448841 + L3 LINE CR1 1510 1576 -1 839 251 35 13 chr6 42966870 42967097 -139448145 + MIR SINE MIR 2 233 -29 393 158 53 0 chr6 42967632 42967708 -139447534 - MER116 DNA Mariner 0 80 1 585 181 76 85 chr6 42967738 42967959 -139447283 - MIR SINE MIR -37 225 1 566 235 74 7 chr6 42968443 42968592 -139446650 + L1ME3 LINE L1 5967 6125 -37 2037 107 75 0 chr6 42968904 42969184 -139446058 + AluSx SINE Alu 1 301 -11 216 0 0 0 chr6 42969731 42969755 -139445487 + (CAG)n Simple_repeat Simple_repeat 2 25 0 1491 154 0 8 chr6 42969895 42970129 -139445113 + AluJo SINE Alu 2 233 -79 726 229 114 35 chr6 42971421 42971648 -139443594 + MIR SINE MIR 5 249 -13 2014 106 4 4 chr6 42972189 42972464 -139442778 - AluSx SINE Alu -3 309 35 2331 95 7 0 chr6 42972748 42973043 -139442199 + AluSc SINE Alu 1 297 -12 2130 119 3 3 chr6 42973155 42973457 -139441785 + AluY SINE Alu 1 302 -9 410 194 29 58 chr6 42973505 42973608 -139441634 + Charlie4 DNA MER1_type 1855 1954 -7 2811 23 0 0 chr6 42973845 42974155 -139441087 + AluY SINE Alu 1 310 -1 2265 82 32 0 chr6 42974680 42974988 -139440254 + AluSx SINE Alu 1 312 0 646 257 102 8 chr6 42974988 42975233 -139440009 + L1ME4a LINE L1 5606 5873 -248 287 202 18 88 chr6 42975243 42975357 -139439885 + L1ME4a LINE L1 5930 6035 -86 2122 116 13 31 chr6 42975357 42975675 -139439567 - AluSq SINE Alu -1 312 1 612 301 68 44 chr6 42975776 42976204 -139439038 - L1MC4a LINE L1 -101 6020 5583 890 270 183 25 chr6 42976208 42976612 -139438630 - MLT1J LTR MaLR 0 511 44 2337 91 7 3 chr6 42976876 42977184 -139438058 - AluSc SINE Alu 0 309 1 805 101 0 0 chr6 42977203 42977302 -139437940 + FRAM SINE Alu 56 154 -22 289 230 23 46 chr6 42979932 42980019 -139435223 - MIR3 SINE MIR -14 194 110 983 262 98 64 chr6 42980314 42980353 -139434889 - MLT1J LTR MaLR -10 501 465 2120 99 7 11 chr6 42980353 42980664 -139434578 + AluSq SINE Alu 1 310 0 983 262 98 64 chr6 42980664 42981104 -139434138 - MLT1J LTR MaLR -46 465 5 2723 221 104 71 chr6 42982206 42982256 -139432986 - L1ME LINE L1 -3856 2684 2637 2249 123 0 0 chr6 42982256 42982564 -139432678 - AluSx SINE Alu -4 308 1 2723 221 104 71 chr6 42982564 42983319 -139431923 - L1ME LINE L1 -3903 2637 1908 2163 96 0 7 chr6 42983319 42983600 -139431642 + AluSg SINE Alu 17 295 -15 2723 221 104 71 chr6 42983600 42983671 -139431571 - L1ME LINE L1 -4632 1908 1841 3351 140 48 3 chr6 42983671 42984237 -139431005 - L1MB2 LINE L1 -12 6159 5569 2723 221 104 71 chr6 42984237 42984836 -139430406 - L1ME LINE L1 -4699 1841 1263 5472 43 3 0 chr6 42984836 42985485 -139429757 - L1PA6 LINE L1 -2 6152 5502 2723 221 104 71 chr6 42985485 42985633 -139429609 - L1ME LINE L1 -5277 1263 1121 1201 182 37 5 chr6 42985633 42985847 -139429395 + MER58A DNA MER1_type 1 221 -3 2723 221 104 71 chr6 42985847 42985865 -139429377 - L1ME LINE L1 -5419 1121 1105 2376 81 0 7 chr6 42985865 42986163 -139429079 + AluY SINE Alu 1 296 -15 2723 221 104 71 chr6 42986163 42986261 -139428981 - L1ME LINE L1 -5435 1105 940 367 273 95 69 chr6 42986323 42986624 -139428618 - L1ME LINE L1 -5843 687 14 292 188 243 62 chr6 42986630 42986678 -139428564 + MER112 DNA MER1_type 17 55 -205 261 0 0 0 chr6 42986678 42986707 -139428535 + (CA)n Simple_repeat Simple_repeat 2 30 0 292 188 243 62 chr6 42986707 42986802 -139428440 + MER112 DNA MER1_type 55 186 -74 1408 163 13 13 chr6 42986827 42987054 -139428188 + AluJo SINE Alu 54 280 -32 2266 76 24 0 chr6 42987621 42987910 -139427332 - AluSx SINE Alu -16 296 1 2438 81 0 0 chr6 42988057 42988354 -139426888 + AluSg SINE Alu 1 297 -13 661 232 93 31 chr6 42989300 42989494 -139425748 - MIR SINE MIR -52 210 5 1058 272 88 11 chr6 42989731 42990084 -139425158 + MLT1J2 LTR MaLR 71 450 0 1518 250 158 9 chr6 42990140 42990687 -139424555 - MLT1G LTR MaLR 0 590 1 214 265 0 51 chr6 42990687 42990725 -139424517 + CT-rich Low_complexity Low_complexity 4 42 -54 1607 167 9 97 chr6 42990725 42991067 -139424175 - AluJo SINE Alu 0 312 1 214 265 0 51 chr6 42991067 42991126 -139424116 + CT-rich Low_complexity Low_complexity 42 96 0 1012 184 72 14 chr6 42991320 42991527 -139423715 - MER20 DNA MER1_type 0 219 1 305 79 0 0 chr6 42991594 42991632 -139423610 - 5S rRNA rRNA -83 38 1 405 261 22 50 chr6 42991638 42991818 -139423424 - Charlie7 DNA MER1_type 0 2612 2438 653 153 0 165 chr6 42991829 42991905 -139423337 + FLAM_C SINE Alu 2 36 -276 7451 46 0 12 chr6 42991905 42993460 -139421782 - L1PA5 LINE L1 -6 6148 4602 653 153 0 165 chr6 42993460 42993553 -139421689 + FLAM_C SINE Alu 36 143 -169 360 176 0 0 chr6 42993556 42993624 -139421618 + GA-rich Low_complexity Low_complexity 1 68 0 750 117 0 2 chr6 42993649 42993907 -139421335 + AluSx SINE Alu 2 310 -2 531 237 0 43 chr6 42994253 42994347 -139420895 + L1MC3 LINE L1 5695 5783 -2025 4115 99 43 3 chr6 42994347 42994925 -139420317 + LTR43 LTR ERV1 2 602 0 531 237 0 43 chr6 42994925 42994969 -139420273 + L1MC3 LINE L1 5783 5827 -1981 32 0 0 0 chr6 42995010 42995042 -139420200 + AT_rich Low_complexity Low_complexity 1 32 0 2440 86 3 3 chr6 42995046 42995349 -139419893 + AluSg SINE Alu 1 303 -7 5138 161 88 79 chr6 42995358 42996497 -139418745 + L1MC3 LINE L1 5812 6939 -1056 1482 152 45 19 chr6 42996497 42996766 -139418476 - AluJo SINE Alu -5 307 32 5138 161 88 79 chr6 42996766 42996839 -139418403 + L1MC3 LINE L1 6939 7010 -985 238 329 0 0 chr6 42996839 42996918 -139418324 + MLT1F1 LTR MaLR 47 125 -442 5138 161 88 79 chr6 42996918 42996946 -139418296 + L1MC3 LINE L1 7010 7036 -959 2344 118 0 0 chr6 42996946 42997252 -139417990 + AluSx SINE Alu 1 306 -6 2390 79 3 0 chr6 42997252 42997544 -139417698 + AluSq SINE Alu 1 293 -20 5138 161 88 79 chr6 42997544 42997962 -139417280 + L1MC3 LINE L1 7035 7744 -251 413 250 75 103 chr6 42998169 42998421 -139416821 + MIR SINE MIR 15 259 -3 2078 140 0 9 chr6 42998463 42998778 -139416464 - AluSx SINE Alu 0 312 1 2221 104 10 3 chr6 42998800 42999109 -139416133 - AluSp SINE Alu -2 311 1 562 199 22 0 chr6 42999170 42999306 -139415936 + GA-rich Low_complexity Low_complexity 2 140 0 243 203 228 0 chr6 42999308 42999387 -139415855 - LTR50 LTR ERVL -89 706 610 1765 100 70 30 chr6 42999439 42999709 -139415533 + AluSx SINE Alu 1 281 -31 357 119 15 15 chr6 42999729 42999796 -139415446 - L1MB7 LINE L1 -4 6180 6114 936 151 6 0 chr6 42999806 42999965 -139415277 - AluJb SINE Alu -33 279 120 819 125 15 0 chr6 42999995 43000131 -139415111 - FLAM_C SINE Alu -5 138 1 433 247 63 52 chr6 43000131 43000305 -139414937 - L1ME1 LINE L1 -54 6112 5937 1699 149 39 4 chr6 43003406 43003687 -139411555 - AluSx SINE Alu -21 291 1 839 293 162 36 chr6 43004481 43005291 -139409951 - L2 LINE L2 -1 3312 2377 2247 90 10 6 chr6 43005463 43005774 -139409468 + AluSx SINE Alu 1 312 0 1481 326 167 27 chr6 43005808 43006861 -139408381 + L3 LINE CR1 363 1563 -14 21 57 0 0 chr6 43007251 43007286 -139407956 + AT_rich Low_complexity Low_complexity 1 35 0 1695 197 0 3 chr6 43007833 43008148 -139407094 + 7SLRNA srpRNA srpRNA 1 314 -6 356 184 53 13 chr6 43008517 43008593 -139406649 - MIR3 SINE MIR -42 166 88 230 200 0 46 chr6 43009888 43009953 -139405289 - MER5B DNA MER1_type 0 178 117 1699 227 73 29 chr6 43009962 43010546 -139404696 + L1ME3A LINE L1 5157 5878 -292 2465 56 0 0 chr6 43010546 43010848 -139404394 + AluY SINE Alu 1 302 -9 1699 227 73 29 chr6 43010848 43011155 -139404087 + L1ME3A LINE L1 5878 6170 0 1867 213 110 27 chr6 43011171 43011411 -139403831 + L1ME1 LINE L1 5448 5667 -499 2070 114 7 0 chr6 43011411 43011717 -139403525 - AluSq SINE Alu -5 308 1 1867 213 110 27 chr6 43011717 43012003 -139403239 + L1ME1 LINE L1 5667 6018 -148 588 256 38 15 chr6 43012051 43012184 -139403058 + MER5B DNA MER1_type 43 178 0 940 250 44 8 chr6 43013771 43014019 -139401223 - MIR SINE MIR 0 262 6 1863 161 0 0 chr6 43014045 43014350 -139400892 - AluSx SINE Alu -5 307 3 854 241 125 5 chr6 43014356 43014580 -139400662 - MIR SINE MIR -10 252 2 2168 70 25 0 chr6 43019336 43019620 -139395622 + AluSp SINE Alu 1 291 -22 1892 131 3 16 chr6 43020053 43020359 -139394883 - AluJb SINE Alu -10 302 1 218 231 39 0 chr6 43020930 43020982 -139394260 + MER5A DNA MER1_type 61 114 -75 1184 215 21 108 chr6 43021766 43022138 -139393104 - MER102b DNA MER1_type -1 340 1 2006 176 14 11 chr6 43022991 43023355 -139391887 - MLT1A1 LTR MaLR 0 365 1 2081 121 0 16 chr6 43023710 43024025 -139391217 - AluSx SINE Alu -2 310 1 1873 148 16 0 chr6 43024660 43024963 -139390279 + AluSx SINE Alu 1 308 -4 2295 106 0 0 chr6 43024967 43025278 -139389964 + AluSx SINE Alu 1 311 -1 1921 82 22 8 chr6 43025654 43025948 -139389294 - AluSx SINE Alu 0 311 14 1477 164 7 21 chr6 43026542 43026850 -139388392 - AluJb SINE Alu 0 312 15 2476 43 0 3 chr6 43027037 43027336 -139387906 + AluY SINE Alu 1 298 -13 1758 149 0 0 chr6 43027363 43027631 -139387611 - AluSx SINE Alu -44 268 1 405 296 133 78 chr6 43028747 43029055 -139386187 - L2 LINE L2 -43 3229 2905 2206 94 17 0 chr6 43029346 43029645 -139385597 + AluSg SINE Alu 1 304 -6 1887 129 0 29 chr6 43030780 43031090 -139384152 - AluSx SINE Alu -11 301 1 2346 65 3 0 chr6 43031667 43031961 -139383281 - AluSp SINE Alu -18 295 1 2207 94 10 3 chr6 43031994 43032302 -139382940 + AluSg SINE Alu 1 310 0 204 245 0 0 chr6 43032472 43032521 -139382721 + T-rich Low_complexity Low_complexity 1 49 0 1729 141 0 4 chr6 43032526 43032782 -139382460 - AluJb SINE Alu -55 257 3 1522 154 8 8 chr6 43034023 43034290 -139380952 - AluJb SINE Alu -45 267 1 246 292 146 10 chr6 43034304 43034400 -139380842 - L2 LINE L2 -20 3293 3185 564 330 152 25 chr6 43034516 43035292 -139379950 - L2 LINE L2 -411 2903 2029 1417 171 25 14 chr6 43035317 43035597 -139379645 + AluJo SINE Alu 13 295 -17 394 283 125 11 chr6 43035660 43035844 -139379398 + L2 LINE L2 3104 3308 -5 * 649 309 72 54 chr6 43035796 43036459 -139378783 - L2 LINE L2 -1274 2040 1366 972 208 114 17 chr6 43036804 43037336 -139377906 - L2 LINE L2 -9 3304 2633 1802 172 7 0 chr6 43038291 43038599 -139376643 - AluSx SINE Alu -2 310 1 790 262 93 6 chr6 43039115 43039436 -139375806 - L1MC4a LINE L1 -1785 6023 5675 742 145 81 8 chr6 43039477 43039601 -139375641 - AluJo SINE Alu -178 134 2 476 194 9 65 chr6 43039813 43039921 -139375321 + MIR SINE MIR 37 138 -124 310 263 127 17 chr6 43041367 43041485 -139373757 - L2 LINE L2 -4 3309 3179 878 209 45 6 chr6 43042095 43042272 -139372970 - MER63A DNA MER1_type -26 184 1 2460 70 0 6 chr6 43042775 43043087 -139372155 - AluSg SINE Alu 0 310 1 1589 174 0 4 chr6 43043093 43043369 -139371873 - AluJo SINE Alu -17 295 21 835 197 7 20 chr6 43043373 43043525 -139371717 - AluJo SINE Alu -161 151 2 2486 56 0 0 chr6 43044072 43044376 -139370866 - AluY SINE Alu -7 304 1 810 281 87 46 chr6 43044466 43044858 -139370384 - L2 LINE L2 0 3272 2865 287 215 75 110 chr6 43044993 43045193 -139370049 - L2 LINE L2 -784 2530 2338 2100 119 0 0 chr6 43045205 43045500 -139369742 + AluSx SINE Alu 2 296 -16 283 300 138 29 chr6 43046017 43046227 -139369015 - L2 LINE L2 -1034 2280 2048 1348 219 105 56 chr6 43046258 43046688 -139368554 + MLT2B1 LTR ERVL 1 451 -69 791 143 0 7 chr6 43046696 43046836 -139368406 + (TCCC)n Simple_repeat Simple_repeat 4 142 0 312 98 0 0 chr6 43046838 43046879 -139368363 + MLT2B1 LTR ERVL 480 520 0 458 287 70 7 chr6 43046886 43047029 -139368213 - L2 LINE L2 -1309 2005 1854 400 305 144 33 chr6 43047083 43047604 -139367638 - L2 LINE L2 -1811 1503 925 1218 183 78 54 chr6 43047628 43047961 -139367281 + MER2 DNA MER2_type 2 342 -2 230 0 33 0 chr6 43047961 43047991 -139367251 + (TG)n Simple_repeat Simple_repeat 2 32 0 761 210 72 62 chr6 43048196 43048472 -139366770 - LTR4 LTR ERV1 0 596 318 280 270 124 43 chr6 43048664 43048849 -139366393 - LTR4 LTR ERV1 -396 200 1 5555 152 15 12 chr6 43048961 43049423 -139365819 - L1PB4 LINE L1 -9 6147 5688 2061 103 36 7 chr6 43049423 43049725 -139365517 - AluSx SINE Alu 0 312 2 5555 152 15 12 chr6 43049725 43050815 -139364427 - L1PB4 LINE L1 -468 5688 4592 2239 84 0 3 chr6 43050815 43051112 -139364130 - AluY SINE Alu -15 296 1 1834 195 79 52 chr6 43051113 43051264 -139363978 + L1MC4 LINE L1 7364 7509 -533 1409 190 42 10 chr6 43051264 43051553 -139363689 - AluJb SINE Alu -12 300 3 1834 195 79 52 chr6 43051553 43051712 -139363530 + L1MC4 LINE L1 7509 7662 -380 2238 85 7 0 chr6 43051712 43052007 -139363235 + AluSq SINE Alu 1 297 -16 1834 195 79 52 chr6 43052007 43052239 -139363003 + L1MC4 LINE L1 7662 7922 -120 745 183 21 0 chr6 43052287 43052429 -139362813 + L1MC4 LINE L1 7898 8042 0 899 49 0 8 chr6 43052498 43052620 -139362622 + (TTTC)n Simple_repeat Simple_repeat 1 121 0 1681 131 25 39 chr6 43052620 43052759 -139362483 - AluSx SINE Alu -33 279 145 2139 108 10 0 chr6 43052759 43053055 -139362187 - AluSx SINE Alu -13 299 1 1681 131 25 39 chr6 43053055 43053198 -139362044 - AluSx SINE Alu -167 145 1 1814 256 58 74 chr6 43053439 43054648 -139360594 + Charlie4 DNA MER1_type 493 1682 -279 1492 174 33 57 chr6 43054666 43054999 -139360243 + THE1C LTR MaLR 1 325 -50 1204 176 22 25 chr6 43055044 43055084 -139360158 - L1ME2 LINE L1 -1 6163 6124 2063 145 0 0 chr6 43055084 43055387 -139359855 - AluSg SINE Alu -7 303 1 1204 176 22 25 chr6 43055387 43055974 -139359268 - L1ME2 LINE L1 -40 6124 5403 * 2937 215 52 54 chr6 43055957 43056615 -139358627 - L1ME1 LINE L1 -4 6556 5898 1915 114 39 0 chr6 43056615 43056895 -139358347 + AluSq SINE Alu 1 291 -22 1940 82 52 0 chr6 43056900 43057167 -139358075 + AluSp SINE Alu 1 281 -32 300 27 0 0 chr6 43057167 43057204 -139358038 + (TAAAA)n Simple_repeat Simple_repeat 1 37 0 2937 215 52 54 chr6 43057204 43057817 -139357425 - L1ME1 LINE L1 -664 5896 5279 1386 129 37 4 chr6 43057827 43057848 -139357394 - L1MA4 LINE L1 -256 6041 6022 358 204 32 0 chr6 43057848 43057941 -139357301 - L1MB3 LINE L1 -1 6182 6087 1386 129 37 4 chr6 43057941 43058166 -139357076 - L1MA4 LINE L1 -275 6022 5793 4014 226 81 70 chr6 43058299 43058863 -139356379 - L1ME1 LINE L1 -1312 5228 4671 1983 143 0 0 chr6 43058863 43059163 -139356079 - AluSx SINE Alu -12 300 1 4014 226 81 70 chr6 43059163 43059794 -139355448 - L1ME1 LINE L1 -1869 4671 4048 2019 121 0 0 chr6 43059794 43060107 -139355135 - AluSg SINE Alu 0 313 1 2477 68 0 0 chr6 43060110 43060421 -139354821 - AluY SINE Alu 0 311 1 4014 226 81 70 chr6 43060421 43060701 -139354541 - L1ME1 LINE L1 -2493 4047 3771 2190 88 3 0 chr6 43060701 43061013 -139354229 - AluSp SINE Alu 0 313 1 4014 226 81 70 chr6 43061013 43061307 -139353935 - L1ME1 LINE L1 -2769 3771 3428 2107 100 30 10 chr6 43061307 43061608 -139353634 - AluSx SINE Alu -5 307 1 4014 226 81 70 chr6 43061608 43061716 -139353526 - L1ME1 LINE L1 -3112 3428 3323 2213 102 7 0 chr6 43061719 43062022 -139353220 - AluSx SINE Alu -7 305 1 327 306 20 10 chr6 43062094 43062192 -139353050 + L1MC4 LINE L1 6604 6702 -1340 1695 163 14 7 chr6 43062197 43062485 -139352757 - AluSx SINE Alu -20 292 3 770 201 35 17 chr6 43062495 43062784 -139352458 - L1ME1 LINE L1 -3890 2650 2357 2173 68 3 27 chr6 43062923 43063219 -139352023 - AluSp SINE Alu -14 299 11 1363 152 4 41 chr6 43063220 43063489 -139351753 + L1MB7 LINE L1 5914 6172 -12 200 59 29 0 chr6 43063493 43063527 -139351715 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 873 188 6 0 chr6 43063850 43064026 -139351216 + FRAM SINE Alu 1 176 0 551 327 75 9 chr6 43064034 43064260 -139350982 + L3 LINE CR1 869 1109 -468 2098 131 0 0 chr6 43064266 43064578 -139350664 + AluJb SINE Alu 1 312 0 651 199 19 56 chr6 43064579 43064740 -139350502 - MLT1L LTR MaLR -337 278 124 1522 163 16 12 chr6 43065402 43065659 -139349583 + MLT1A1 LTR MaLR 1 258 -107 185 278 96 61 chr6 43067543 43067604 -139347638 - L2 LINE L2 -590 2724 2660 287 224 31 112 chr6 43067604 43067765 -139347477 + MIR3 SINE MIR 3 150 -58 285 317 75 27 chr6 43068251 43068437 -139346805 - L3 LINE CR1 -193 1384 1190 189 0 0 0 chr6 43069382 43069403 -139345839 + (GGA)n Simple_repeat Simple_repeat 2 22 0 418 239 8 60 chr6 43069846 43069963 -139345279 + MIR3 SINE MIR 64 174 -34 1874 125 201 8 chr6 43070176 43070535 -139344707 - MSTA LTR MaLR 0 428 1 732 263 55 71 chr6 43070599 43070738 -139344504 + MIR SINE MIR 12 147 -115 1396 146 153 0 chr6 43070738 43070992 -139344250 + AluSx SINE Alu 1 293 -9 732 263 55 71 chr6 43070992 43071107 -139344135 + MIR SINE MIR 147 262 0 324 0 0 0 chr6 43071291 43071327 -139343915 + (TG)n Simple_repeat Simple_repeat 2 37 0 238 214 86 14 chr6 43071501 43071571 -139343671 + MIR SINE MIR 80 154 -108 585 292 69 35 chr6 43072009 43072269 -139342973 - L2 LINE L2 0 3313 3045 581 274 74 42 chr6 43072366 43072434 -139342808 - MIR SINE MIR -1 261 197 1661 175 0 13 chr6 43072434 43072737 -139342505 + AluJo SINE Alu 1 299 -13 581 274 74 42 chr6 43072737 43072883 -139342359 - MIR SINE MIR -65 197 40 216 327 97 9 chr6 43073100 43073213 -139342029 - MIR3 SINE MIR -1 207 85 532 141 33 0 chr6 43073777 43073869 -139341373 + LTR33 LTR ERVL 2 96 -425 667 251 12 18 chr6 43075295 43075466 -139339776 + MIR SINE MIR 91 260 -2 361 162 17 111 chr6 43075759 43075876 -139339366 - MIR3 SINE MIR -17 191 86 564 209 93 8 chr6 43076148 43076277 -139338965 - MIR SINE MIR -41 221 82 673 291 29 0 chr6 43076958 43077168 -139338074 + MIR SINE MIR 47 262 0 397 188 168 0 chr6 43077251 43077352 -139337890 - MIR SINE MIR -70 192 75 277 297 0 0 chr6 43077704 43077805 -139337437 + (CA)n Simple_repeat Simple_repeat 1 101 0 262 278 11 22 chr6 43078074 43078164 -139337078 - MER5B DNA MER1_type -1 177 89 * 453 239 177 0 chr6 43078156 43078286 -139336956 - MIR SINE MIR -109 153 1 293 119 0 0 chr6 43078545 43078587 -139336655 + MIR SINE MIR 79 120 -142 547 270 81 73 chr6 43079845 43080190 -139335052 + L1MC4a LINE L1 5761 6110 -11 232 184 105 61 chr6 43080259 43080373 -139334869 - MIR3 SINE MIR -80 128 10 564 223 9 0 chr6 43080635 43080747 -139334495 + MER81 DNA DNA 1 113 -1 372 94 0 0 chr6 43080940 43080993 -139334249 + (CA)n Simple_repeat Simple_repeat 1 53 0 649 259 37 19 chr6 43081460 43081622 -139333620 + MIR3 SINE MIR 11 175 -33 593 226 189 0 chr6 43081635 43081799 -139333443 + MIR SINE MIR 37 231 -31 947 250 90 56 chr6 43081810 43082254 -139332988 + LTR16C LTR ERVL 1 459 -32 596 230 16 39 chr6 43082262 43082294 -139332948 - MIR SINE MIR -43 219 188 1583 189 33 3 chr6 43082294 43082595 -139332647 - AluJo SINE Alu -2 310 1 596 230 16 39 chr6 43082595 43082786 -139332456 - MIR SINE MIR -74 188 3 946 288 66 6 chr6 43083428 43083761 -139331481 - L1MC4a LINE L1 -1927 5881 5529 232 224 211 0 chr6 43083816 43083892 -139331350 - MIR SINE MIR -81 181 90 760 226 48 68 chr6 43083892 43084124 -139331118 - MIR SINE MIR -3 259 34 235 150 0 0 chr6 43084947 43084987 -139330255 + L2 LINE L2 2934 2973 -299 358 305 76 0 chr6 43085035 43085140 -139330102 + L2 LINE L2 3147 3259 -13 2346 50 0 0 chr6 43085142 43085470 -139329772 + AluY SINE Alu 1 328 0 584 281 7 39 chr6 43085639 43085792 -139329450 - MIR SINE MIR -95 167 20 303 154 0 0 chr6 43085995 43086047 -139329195 + FAM SINE Alu 127 178 -1 572 172 17 0 chr6 43086055 43086171 -139329071 - L1MB3 LINE L1 -16 6167 6050 2521 48 0 0 chr6 43086173 43086482 -139328760 - AluY SINE Alu -2 309 1 374 197 14 0 chr6 43086486 43086557 -139328685 - L1M4 LINE L1 -2921 3723 3652 1131 148 0 0 chr6 43086559 43086742 -139328500 - AluSg/x SINE Alu 0 312 130 9457 159 35 62 chr6 43086742 43086873 -139328369 - L1M4 LINE L1 -2966 3678 3545 2104 112 6 6 chr6 43086873 43087186 -139328056 - AluSq SINE Alu 0 313 1 9457 159 35 62 chr6 43087186 43087748 -139327494 - L1M4 LINE L1 -3099 3545 2969 387 105 0 0 chr6 43087748 43087805 -139327437 + (TA)n Simple_repeat Simple_repeat 1 57 0 2023 112 13 29 chr6 43087805 43088118 -139327124 - AluSx SINE Alu -4 308 1 9457 159 35 62 chr6 43088118 43088537 -139326705 - L1M4 LINE L1 -3674 2970 2541 1729 135 19 77 chr6 43088537 43088848 -139326394 - AluSx SINE Alu -19 293 1 9457 159 35 62 chr6 43088848 43089190 -139326052 - L1M4 LINE L1 -4103 2541 2191 3243 144 5 76 chr6 43089190 43089820 -139325422 - LTR9 LTR ERV1 0 612 29 2279 62 3 19 chr6 43089820 43090128 -139325114 - AluY SINE Alu -8 303 1 3243 144 5 76 chr6 43090128 43090156 -139325086 - LTR9 LTR ERV1 -583 29 1 9457 159 35 62 chr6 43090156 43090526 -139324716 - L1M4 LINE L1 -4453 2191 1813 2109 60 26 0 chr6 43090526 43090794 -139324448 - AluSq SINE Alu -10 303 29 9457 159 35 62 chr6 43090794 43090872 -139324370 - L1M4 LINE L1 -4831 1813 1734 1941 120 24 7 chr6 43090872 43091163 -139324079 - AluSg SINE Alu -7 303 8 9457 159 35 62 chr6 43091163 43092119 -139323123 - L1M4 LINE L1 -4910 1734 889 1076 157 0 0 chr6 43092119 43092285 -139322957 - AluSg/x SINE Alu -17 293 128 3613 169 15 13 chr6 43092286 43092903 -139322339 - L1M4 LINE L1 -5750 896 279 323 189 54 0 chr6 43092908 43092982 -139322260 - L1M4 LINE L1 -6452 90 13 3180 215 49 41 chr6 43093000 43093567 -139321675 - L1ME LINE L1 -4215 2325 1764 2161 142 35 55 chr6 43093567 43093583 -139321659 - MER65A LTR ERV1 0 445 430 477 0 0 0 chr6 43093583 43093636 -139321606 + (GA)n Simple_repeat Simple_repeat 2 54 0 2161 142 35 55 chr6 43093636 43094019 -139321223 - MER65A LTR ERV1 -15 430 52 2047 119 0 0 chr6 43094019 43094332 -139320910 - AluSx SINE Alu 0 313 1 2161 142 35 55 chr6 43094332 43094381 -139320861 - MER65A LTR ERV1 -393 52 4 3180 215 49 41 chr6 43094381 43094865 -139320377 - L1ME LINE L1 -4776 1764 1255 661 66 19 47 chr6 43094912 43094973 -139320269 - L1MB2 LINE L1 0 6171 6113 882 203 111 75 chr6 43094973 43095273 -139319969 - MER57A LTR ERV1 0 403 84 1938 109 0 0 chr6 43095273 43095539 -139319703 + AluSg SINE Alu 41 306 -4 882 203 111 75 chr6 43095539 43095627 -139319615 - MER57A LTR ERV1 -319 84 1 661 66 19 47 chr6 43095627 43095671 -139319571 - L1MB2 LINE L1 -58 6113 6069 286 311 22 30 chr6 43095816 43095951 -139319291 - L1ME LINE L1 -6405 135 2 1014 255 26 50 chr6 43095990 43096308 -139318934 - L1M4 LINE L1 -874 5272 4963 2417 63 3 0 chr6 43096308 43096611 -139318631 + AluY SINE Alu 1 304 -7 1014 255 26 50 chr6 43096611 43096669 -139318573 - L1M4 LINE L1 -1183 4963 4905 416 225 147 39 chr6 43096685 43096916 -139318326 + Charlie4 DNA MER1_type 1703 1958 -3 228 315 45 22 chr6 43096932 43097021 -139318221 + MIR SINE MIR 20 110 -152 554 321 99 73 chr6 43097046 43097383 -139317859 - L2 LINE L2 -8 3264 2937 1997 106 0 7 chr6 43097383 43097693 -139317549 - AluSx SINE Alu 0 309 2 554 321 99 73 chr6 43097693 43098337 -139316905 - L2 LINE L2 -335 2937 2245 209 188 246 14 chr6 43098392 43098461 -139316781 - L2 LINE L2 -2 3311 3227 201 222 67 0 chr6 43098489 43098534 -139316708 + MIR SINE MIR 107 154 -108 279 258 157 0 chr6 43099396 43099485 -139315757 + MIR3 SINE MIR 72 174 -34 1985 86 51 10 chr6 43100196 43100488 -139314754 - AluSx SINE Alu -8 304 1 1755 194 83 8 chr6 43101989 43102376 -139312866 - MLT1C LTR MaLR 0 467 52 1272 89 112 37 chr6 43102698 43102821 -139312421 - MER30 DNA MER1_type 0 230 118 2093 79 35 3 chr6 43102821 43103111 -139312131 + AluY SINE Alu 1 299 -12 1272 89 112 37 chr6 43103111 43103201 -139312041 - MER30 DNA MER1_type -112 118 1 1800 170 3 0 chr6 43103675 43103975 -139311267 + AluJb SINE Alu 1 301 -11 192 326 0 0 chr6 43104186 43104235 -139311007 + L2 LINE L2 3219 3267 -5 821 189 0 0 chr6 43105390 43105522 -139309720 - FLAM_A SINE Alu -1 132 1 2184 90 10 0 chr6 43106986 43107286 -139307956 - AluSp SINE Alu -8 305 3 207 321 131 29 chr6 43108024 43108161 -139307081 - L2 LINE L2 -3 3269 3119 28 48 0 0 chr6 43108531 43108573 -139306669 + AT_rich Low_complexity Low_complexity 1 42 0 330 287 42 42 chr6 43108883 43108931 -139306311 - MIR SINE MIR 0 262 215 2041 120 7 10 chr6 43108931 43109232 -139306010 - AluSq SINE Alu -13 300 1 330 287 42 42 chr6 43109232 43109326 -139305916 - MIR SINE MIR -46 216 120 252 293 0 0 chr6 43109393 43109451 -139305791 - MIR SINE MIR -158 104 47 2175 108 3 3 chr6 43110319 43110626 -139304616 + AluSq SINE Alu 1 307 -6 2318 68 0 16 chr6 43111061 43111371 -139303871 - AluY SINE Alu -6 305 1 216 328 17 0 chr6 43111775 43111833 -139303409 + L2 LINE L2 3205 3263 -9 476 290 246 14 chr6 43112085 43112382 -139302860 + L3 LINE CR1 1098 1463 -114 2038 112 3 26 chr6 43113157 43113461 -139301781 + AluSx SINE Alu 1 297 -15 2294 86 0 3 chr6 43113508 43113811 -139301431 + AluY SINE Alu 1 302 -9 506 256 25 0 chr6 43114395 43114516 -139300726 + MER5B DNA MER1_type 3 126 -52 1586 191 3 19 chr6 43114517 43114826 -139300416 - AluJo SINE Alu -8 304 1 501 32 0 0 chr6 43114840 43114903 -139300339 + (TTATG)n Simple_repeat Simple_repeat 2 64 0 2132 113 0 0 chr6 43114903 43115194 -139300048 - AluSx SINE Alu -21 291 1 197 233 0 23 chr6 43115194 43115237 -139300005 + MER5B DNA MER1_type 116 157 -21 258 370 123 7 chr6 43115455 43115593 -139299649 + L2 LINE L2 3118 3271 -1 2078 152 81 71 chr6 43116370 43116878 -139298364 + Charlie1b DNA MER1_type 3 515 -8 619 291 34 10 chr6 43117733 43117939 -139297303 + MIR SINE MIR 4 214 -48 231 320 90 0 chr6 43118445 43118545 -139296697 - MIR SINE MIR -119 143 35 195 167 28 0 chr6 43119407 43119443 -139295799 + MIR SINE MIR 109 145 -63 185 237 75 65 chr6 43119978 43120071 -139295171 + L3b LINE CR1 1293 1386 -197 2011 96 20 3 chr6 43120683 43120976 -139294266 - AluSp SINE Alu -15 298 1 302 317 47 39 chr6 43121421 43121588 -139293654 - MIR SINE MIR -50 212 42 1507 213 13 0 chr6 43122536 43122837 -139292405 + AluJo SINE Alu 1 305 -7 1145 146 155 0 chr6 43123066 43123305 -139291937 + L1MD3 LINE L1 7715 7990 -5 2086 100 3 3 chr6 43123651 43123951 -139291291 - AluSx SINE Alu -12 300 1 657 128 94 13 chr6 43126293 43126442 -139288800 - L1MB2 LINE L1 0 6171 6011 198 291 110 24 chr6 43126909 43127036 -139288206 + MIR3 SINE MIR 6 143 -65 333 255 172 41 chr6 43128076 43128221 -139287021 - MER5A DNA MER1_type -25 164 1 1713 193 181 18 chr6 43129665 43129780 -139285462 - L1ME2 LINE L1 0 6959 6864 2351 72 0 7 chr6 43129780 43130087 -139285155 + AluY SINE Alu 1 305 -6 1713 193 181 18 chr6 43130087 43130485 -139284757 - L1ME2 LINE L1 -95 6864 6362 279 0 0 0 chr6 43130489 43130520 -139284722 + (TG)n Simple_repeat Simple_repeat 2 32 0 221 163 50 25 chr6 43130539 43130578 -139284664 + (TA)n Simple_repeat Simple_repeat 2 39 -44 2211 69 14 0 chr6 43130578 43130869 -139284373 + AluSx SINE Alu 1 295 -17 221 163 50 25 chr6 43130869 43130909 -139284333 + (TA)n Simple_repeat Simple_repeat 39 83 0 1014 251 153 22 chr6 43132206 43132617 -139282625 + L1MCc LINE L1 1015 1479 -4944 2447 52 0 7 chr6 43132628 43132935 -139282307 + AluY SINE Alu 1 305 -6 1828 183 127 124 chr6 43132935 43133337 -139281905 - L1ME2 LINE L1 -120 6044 5645 333 0 0 0 chr6 43133337 43133374 -139281868 + (TG)n Simple_repeat Simple_repeat 2 38 0 1828 183 127 124 chr6 43133374 43133432 -139281810 - L1ME2 LINE L1 -519 5645 5589 2211 69 14 0 chr6 43133432 43133723 -139281519 + AluSx SINE Alu 1 295 -17 1828 183 127 124 chr6 43133723 43134050 -139281192 - L1ME2 LINE L1 -575 5589 5254 1210 115 6 0 chr6 43134065 43134239 -139281003 - AluSq SINE Alu -138 175 1 2500 204 41 30 chr6 43134241 43134549 -139280693 - L1ME2 LINE L1 -814 6127 5824 2077 92 0 73 chr6 43134549 43134865 -139280377 - AluSc SINE Alu -16 293 1 2500 204 41 30 chr6 43134865 43135261 -139279981 - L1ME2 LINE L1 -1117 5824 5415 2286 245 74 69 chr6 43135284 43135320 -139279922 - L1ME2 LINE L1 -3129 3812 3778 1862 122 21 7 chr6 43135320 43135606 -139279636 + AluJb SINE Alu 1 290 -22 2286 245 74 69 chr6 43135606 43137034 -139278208 - L1ME2 LINE L1 -3163 3778 2369 2071 106 3 0 chr6 43137034 43137341 -139277901 + AluSx SINE Alu 1 308 0 794 142 0 3 chr6 43137356 43137597 -139277645 + AluSx SINE Alu 3 309 0 1687 246 75 53 chr6 43137602 43137954 -139277288 - L1ME2 LINE L1 -4758 2183 1840 2154 121 0 0 chr6 43137954 43138260 -139276982 - AluSx SINE Alu -6 306 1 1687 246 75 53 chr6 43138260 43138586 -139276656 - L1ME2 LINE L1 -5101 1840 1523 2483 41 0 0 chr6 43138586 43138879 -139276363 - AluY SINE Alu -18 293 1 1687 246 75 53 chr6 43138879 43139301 -139275941 - L1ME2 LINE L1 -5418 1523 1015 188 250 47 31 chr6 43146662 43146726 -139268516 + MIR SINE MIR 31 95 -113 198 91 0 0 chr6 43152907 43152940 -139262302 + (GGGTG)n Simple_repeat Simple_repeat 3 35 0 230 339 0 0 chr6 43155638 43155703 -139259539 + Charlie8 DNA MER1_type 2353 2417 0 626 263 121 5 chr6 43157072 43157296 -139257946 + MIR SINE MIR 13 262 0 2293 97 0 3 chr6 43157393 43157703 -139257539 + AluSc SINE Alu 1 309 0 202 195 98 98 chr6 43158905 43158987 -139256255 + MER5A DNA MER1_type 108 189 0 765 222 140 14 chr6 43160167 43160388 -139254854 - MIR SINE MIR -9 253 5 373 373 37 12 chr6 43160494 43160655 -139254587 - MIR SINE MIR -85 177 13 2351 72 10 0 chr6 43162499 43162804 -139252438 - AluSp SINE Alu -5 308 1 448 274 114 50 chr6 43162970 43163247 -139251995 + MLT1J LTR MaLR 110 419 -92 2329 86 13 0 chr6 43163247 43163550 -139251692 - AluSx SINE Alu -5 307 1 448 274 114 50 chr6 43163550 43163648 -139251594 + MLT1J LTR MaLR 419 509 -2 2072 92 4 4 chr6 43164602 43164908 -139250334 + AluSx SINE Alu 1 306 0 188 328 15 0 chr6 43164989 43165056 -139250186 - MIR3 SINE MIR -52 156 89 354 262 29 10 chr6 43165086 43165189 -139250053 - MIR SINE MIR -6 256 152 279 329 112 0 chr6 43165196 43165348 -139249894 + MLT1J LTR MaLR 8 176 -335 450 258 47 84 chr6 43165519 43165652 -139249590 + MER58A DNA MER1_type 1 125 -2295 2536 170 75 119 chr6 43165652 43166037 -139249205 + MER82 DNA MER2_type 1 345 -308 1528 133 39 42 chr6 43166037 43166322 -139248920 + AluSx SINE Alu 9 292 -20 2536 170 75 119 chr6 43166322 43166619 -139248623 + MER82 DNA MER2_type 345 653 0 450 258 47 84 chr6 43166619 43166698 -139248544 + MER58A DNA MER1_type 125 205 -19 269 182 0 65 chr6 43166726 43166803 -139248439 + MLT1I LTR MaLR 324 395 -14 2203 88 3 14 chr6 43166997 43167294 -139247948 + AluSx SINE Alu 1 294 -18 384 172 198 35 chr6 43167302 43167418 -139247824 + MER5A DNA MER1_type 55 189 0 242 224 276 9 chr6 43167526 43167642 -139247600 + MIR SINE MIR 41 187 -75 419 261 92 13 chr6 43169020 43169173 -139246069 + MER112 DNA MER1_type 5 169 -91 401 229 26 35 chr6 43169243 43169417 -139245825 - LTR30 LTR ERV1 -33 746 348 1266 201 184 17 chr6 43169437 43169785 -139245457 - pTR5 LTR ERV1 -638 1800 1395 252 255 0 0 chr6 43169785 43169836 -139245406 - LTR30 LTR ERV1 -670 52 2 1897 100 19 0 chr6 43169836 43170105 -139245137 + AluSg SINE Alu 27 300 -10 249 197 33 33 chr6 43170119 43170180 -139245062 + MER112 DNA MER1_type 194 254 -6 385 226 49 39 chr6 43170292 43170394 -139244848 - L1ME LINE L1 -410 5711 5609 477 319 30 6 chr6 43171067 43171236 -139244006 + MIR SINE MIR 14 186 -76 279 333 27 41 chr6 43171883 43172030 -139243212 + MIR3 SINE MIR 32 176 -32 224 329 40 0 chr6 43172366 43172442 -139242800 + MER91A DNA MER1_type 118 196 0 2154 104 27 0 chr6 43173063 43173362 -139241880 - AluSx SINE Alu -5 307 1 198 273 23 80 chr6 43173765 43173853 -139241389 - MIR SINE MIR -56 206 124 676 318 42 64 chr6 43174109 43174565 -139240677 + MLT1K LTR MaLR 128 573 -15 760 245 30 20 chr6 43174770 43174970 -139240272 + MIR SINE MIR 61 262 0 253 326 43 0 chr6 43175542 43175634 -139239608 - MIR3 SINE MIR -52 156 61 247 280 0 13 chr6 43175694 43175769 -139239473 + MLT1K LTR MaLR 180 253 -335 360 319 151 5 chr6 43176713 43176898 -139238344 + L3 LINE CR1 1306 1517 -60 462 232 454 6 chr6 43176906 43177304 -139237938 + L2 LINE L2 2725 3313 0 268 164 36 0 chr6 43177324 43177379 -139237863 + L3 LINE CR1 1514 1570 -7 421 269 88 26 chr6 43177580 43177773 -139237469 - L2 LINE L2 -193 3079 2875 1225 147 115 9 chr6 43177859 43178077 -139237165 - AluJo SINE Alu -68 244 4 234 314 8 42 chr6 43179470 43179588 -139235654 + L1MC/D LINE L1 5798 5911 -1897 228 67 0 0 chr6 43179601 43179631 -139235611 + (TA)n Simple_repeat Simple_repeat 1 30 0 1925 100 43 23 chr6 43179635 43179936 -139235306 - AluSx SINE Alu -5 307 1 283 100 0 0 chr6 43180011 43180051 -139235191 - Alu SINE Alu -263 40 1 202 211 53 0 chr6 43180540 43180597 -139234645 + MIR SINE MIR 39 98 -164 351 253 63 89 chr6 43181574 43181764 -139233478 - MLT1I LTR MaLR -27 382 198 1732 103 0 0 chr6 43181815 43182047 -139233195 + AluSg SINE Alu 1 232 -78 745 226 22 36 chr6 43182225 43182338 -139232904 + L1ME3A LINE L1 5721 5825 -324 1195 217 14 0 chr6 43182338 43182555 -139232687 + MER58A DNA MER1_type 5 224 0 745 226 22 36 chr6 43182555 43182677 -139232565 + L1ME3A LINE L1 5825 5947 -202 1151 223 29 83 chr6 43182703 43183089 -139232153 - MLT1A1 LTR MaLR 0 365 1 23 33 0 0 chr6 43183295 43183325 -139231917 + AT_rich Low_complexity Low_complexity 1 30 0 201 356 68 20 chr6 43183444 43183590 -139231652 - L2 LINE L2 -480 2834 2682 376 200 70 0 chr6 43183597 43183697 -139231545 + MER96 DNA MER1_type? 69 175 0 801 260 173 7 chr6 43183699 43183999 -139231243 + L2 LINE L2 2964 3313 0 318 338 35 7 chr6 43184745 43184890 -139230352 - MIR SINE MIR -53 209 61 408 222 37 80 chr6 43185489 43185651 -139229591 + LTR33 LTR ERVL 7 161 -360 488 253 14 7 chr6 43185747 43185893 -139229349 + LTR33 LTR ERVL 366 512 -9 393 251 72 24 chr6 43186265 43186432 -139228810 - LTR33 LTR ERVL -7 514 340 567 240 117 5 chr6 43186500 43186696 -139228546 - LTR33 LTR ERVL -300 221 4 283 282 61 30 chr6 43186696 43186810 -139228432 - Charlie7 DNA MER1_type -55 2557 2440 286 300 30 10 chr6 43186804 43186904 -139228338 - Charlie7 DNA MER1_type -2508 104 3 410 171 53 0 chr6 43186925 43187001 -139228241 + L1ME3 LINE L1 6016 6095 -67 848 261 22 9 chr6 43187221 43187447 -139227795 - MIR SINE MIR 0 262 34 201 291 121 57 chr6 43187856 43187997 -139227245 + L2 LINE L2 3107 3256 -16 2054 120 3 0 chr6 43188150 43188441 -139226801 - AluSx SINE Alu -19 293 2 562 294 59 25 chr6 43190456 43190660 -139224582 + MIR SINE MIR 8 218 -44 533 299 30 30 chr6 43191004 43191201 -139224041 + MIR SINE MIR 22 218 -44 257 242 77 0 chr6 43191296 43191387 -139223855 + L2 LINE L2 2924 3021 -251 180 288 42 121 chr6 43191497 43191712 -139223530 + L2 LINE L2 2968 3165 -107 1064 258 117 38 chr6 43191724 43192169 -139223073 - MLT1J LTR MaLR 0 511 32 656 183 0 0 chr6 43192193 43192308 -139222934 + AluSg/x SINE Alu 195 309 -1 730 200 0 0 chr6 43192319 43192444 -139222798 + FLAM_C SINE Alu 3 127 -6 625 223 159 52 chr6 43193012 43193321 -139221921 + LTR16A1 LTR ERVL 101 442 -15 213 250 79 26 chr6 43193934 43194010 -139221232 + L2 LINE L2 3184 3263 -9 264 353 7 0 chr6 43194414 43194567 -139220675 + (CA)n Simple_repeat Simple_repeat 1 154 0 422 311 0 22 chr6 43194584 43194767 -139220475 + (CA)n Simple_repeat Simple_repeat 1 179 0 614 263 56 0 chr6 43195168 43195328 -139219914 + MIR SINE MIR 81 249 -13 183 328 17 0 chr6 43196195 43196253 -139218989 - L2 LINE L2 -30 3242 3184 270 81 0 0 chr6 43196604 43196641 -139218601 + (TG)n Simple_repeat Simple_repeat 1 37 0 207 242 88 66 chr6 43198624 43198715 -139216527 - MIR SINE MIR -86 122 30 464 323 156 36 chr6 43198916 43199629 -139215613 - L2 LINE L2 -229 3043 2241 501 255 95 38 chr6 43199886 43200287 -139214955 - LTR33 LTR ERVL -16 505 43 1014 153 0 34 chr6 43200437 43200613 -139214629 - FRAM SINE Alu -6 170 1 2237 86 0 7 chr6 43201130 43201422 -139213820 - AluSx SINE Alu -17 295 6 542 264 68 41 chr6 43201480 43201700 -139213542 - MIR SINE MIR -2 260 35 259 262 0 0 chr6 43201991 43202052 -139213190 - MLT1K LTR MaLR -2 586 526 467 271 191 10 chr6 43202054 43202253 -139212989 - MIR SINE MIR -1 261 27 251 303 121 68 chr6 43202657 43202938 -139212304 - MLT1K LTR MaLR -172 416 121 1324 245 97 11 chr6 43203252 43203624 -139211618 - MLT1I LTR MaLR 0 409 6 369 0 0 0 chr6 43203646 43203687 -139211555 + (CA)n Simple_repeat Simple_repeat 1 41 0 358 200 37 52 chr6 43204223 43204358 -139210884 + (CAGAGA)n Simple_repeat Simple_repeat 5 137 0 401 333 142 0 chr6 43204859 43205183 -139210059 - L2 LINE L2 0 3313 2944 260 313 65 61 chr6 43205457 43205891 -139209351 + L2 LINE L2 2703 3191 -81 366 219 70 9 chr6 43207098 43207212 -139208030 - MLT1J2 LTR MaLR -12 438 318 2171 96 0 7 chr6 43207572 43207875 -139207367 - AluSc SINE Alu -8 301 1 283 100 0 0 chr6 43207950 43207990 -139207252 - Alu SINE Alu -262 40 1 202 211 53 0 chr6 43208476 43208533 -139206709 + MIR SINE MIR 39 98 -164 1592 123 3 70 chr6 43209279 43209429 -139205813 - AluJb SINE Alu -28 284 162 2281 95 0 0 chr6 43209429 43209733 -139205509 - AluY SINE Alu -7 304 1 1592 123 3 70 chr6 43209733 43209883 -139205359 - AluJb SINE Alu -150 162 4 439 268 32 8 chr6 43209929 43210052 -139205190 - MIR SINE MIR -109 153 28 216 266 0 128 chr6 43210884 43210978 -139204264 - MIR SINE MIR -63 145 64 2187 118 0 0 chr6 43211167 43211472 -139203770 + AluSg SINE Alu 1 305 -5 233 348 55 27 chr6 43211612 43211868 -139203374 - L2 LINE L2 -247 3066 2804 336 314 16 0 chr6 43211941 43212065 -139203177 - MER117 DNA MER1_type -27 170 45 1927 118 55 0 chr6 43212342 43212631 -139202611 + AluSg SINE Alu 1 305 -5 435 52 0 0 chr6 43212875 43212933 -139202309 + (TG)n Simple_repeat Simple_repeat 2 59 0 207 0 0 0 chr6 43212932 43212955 -139202287 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 279 79 0 0 chr6 43213121 43213159 -139202083 + (TG)n Simple_repeat Simple_repeat 1 38 0 1766 134 34 0 chr6 43213259 43213528 -139201714 - AluSx SINE Alu -34 278 1 612 264 48 14 chr6 43213543 43213751 -139201491 + LTR33 LTR ERVL 307 521 0 495 172 193 7 chr6 43213787 43213932 -139201310 - MIR SINE MIR -78 184 13 400 257 71 0 chr6 43214018 43214131 -139201111 - L2 LINE L2 -2 3270 3150 336 244 25 59 chr6 43214130 43214249 -139200993 + MER5B DNA MER1_type 5 119 -59 * 288 302 42 0 chr6 43215439 43215535 -139199707 - MIR SINE MIR -15 247 148 2113 101 3 7 chr6 43215727 43216055 -139199187 - AluJb SINE Alu 0 327 1 3217 204 55 16 chr6 43216423 43217242 -139198000 + L1M4 LINE L1 245 1095 -5229 1081 191 97 120 chr6 43217243 43217635 -139197607 + MLT1B LTR MaLR 8 390 0 1988 215 69 11 chr6 43217637 43218187 -139197055 + L1M4 LINE L1 1117 1634 -4792 2127 103 0 3 chr6 43218187 43218479 -139196763 - AluSc SINE Alu -18 291 1 1988 215 69 11 chr6 43218479 43218490 -139196752 + L1M4 LINE L1 1634 1643 -4783 762 189 0 0 chr6 43218490 43218612 -139196630 - FLAM_A SINE Alu -10 123 2 1988 215 69 11 chr6 43218612 43218665 -139196577 + L1M4 LINE L1 1643 1754 -4672 735 161 9 165 chr6 43219199 43219359 -139195883 + MER5A DNA MER1_type 1 118 -71 1943 128 7 0 chr6 43219359 43219648 -139195594 - AluSx SINE Alu -21 291 1 735 161 9 165 chr6 43219648 43219711 -139195531 + MER5A DNA MER1_type 118 189 0 309 306 74 0 chr6 43219835 43219943 -139195299 + L2 LINE L2 3157 3272 0 586 277 108 29 chr6 43219970 43220383 -139194859 + L2 LINE L2 2680 3131 -182 875 240 46 5 chr6 43220869 43221086 -139194156 - MIR SINE MIR 0 262 37 2265 102 0 0 chr6 43221230 43221533 -139193709 - AluSg SINE Alu -7 303 1 205 341 73 0 chr6 43221534 43221616 -139193626 - MIR SINE MIR -115 147 60 340 318 8 54 chr6 43222371 43222500 -139192742 + MIR SINE MIR 20 142 -120 410 171 53 0 chr6 43223118 43223194 -139192048 + L1ME3 LINE L1 6016 6095 -67 834 256 22 13 chr6 43223414 43223641 -139191601 - MIR SINE MIR 0 262 34 187 264 109 73 chr6 43224080 43224190 -139191052 + L2 LINE L2 3143 3256 -16 2148 116 3 0 chr6 43224343 43224645 -139190597 - AluSx SINE Alu -8 304 2 209 136 0 45 chr6 43224830 43224874 -139190368 + (GGCTG)n Simple_repeat Simple_repeat 5 46 0 594 243 0 0 chr6 43225079 43225256 -139189986 + (TG)n Simple_repeat Simple_repeat 2 178 0 362 357 31 15 chr6 43225514 43225710 -139189532 - MIR SINE MIR -6 256 58 611 336 35 24 chr6 43225785 43226074 -139189168 - LTR16A1 LTR ERVL 0 457 166 2112 105 3 3 chr6 43226250 43226545 -139188697 + AluSq SINE Alu 1 295 -18 1260 227 84 29 chr6 43226739 43227309 -139187933 - L2 LINE L2 0 3313 2691 2320 72 0 10 chr6 43227309 43227613 -139187629 + AluY SINE Alu 1 301 -10 1260 227 84 29 chr6 43227613 43227658 -139187584 - L2 LINE L2 -622 2691 2650 388 313 28 50 chr6 43228094 43228273 -139186969 - MIR3 SINE MIR -23 185 11 255 250 177 7 chr6 43228316 43228469 -139186773 + MIR SINE MIR 24 206 -56 1774 271 60 6 chr6 43228886 43229369 -139185873 + MLT1J LTR MaLR 1 509 -2 987 249 110 37 chr6 43229545 43229926 -139185316 - MLT1I LTR MaLR 0 409 1 639 0 0 0 chr6 43230021 43230092 -139185150 + (TTTTA)n Simple_repeat Simple_repeat 4 74 0 1820 138 0 11 chr6 43230092 43230375 -139184867 - AluSx SINE Alu -32 280 1 966 193 38 5 chr6 43230558 43230770 -139184472 - MIR SINE MIR -20 242 24 1368 193 115 70 chr6 43230873 43231247 -139183995 + MLT1D LTR MaLR 1 391 -114 198 0 0 0 chr6 43231253 43231275 -139183967 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1194 149 0 5 chr6 43231338 43231526 -139183716 - AluJb SINE Alu -125 187 1 578 186 0 9 chr6 43231530 43231643 -139183599 + MLT1D LTR MaLR 394 505 0 189 352 56 0 chr6 43232339 43232447 -139182795 + L2 LINE L2 2744 2857 -457 334 243 145 40 chr6 43232496 43232648 -139182594 + L2 LINE L2 3010 3177 -136 395 234 35 107 chr6 43232683 43232765 -139182477 - MER3 DNA MER1_type 0 209 123 2103 120 3 0 chr6 43232765 43233064 -139182178 + AluSq SINE Alu 1 300 -13 395 234 35 107 chr6 43233064 43233178 -139182064 - MER3 DNA MER1_type -86 123 27 428 288 92 7 chr6 43234925 43235078 -139180164 - MIR3 SINE MIR -18 190 25 779 150 0 88 chr6 43235588 43235735 -139179507 - AluJo SINE Alu -178 134 1 387 253 50 0 chr6 43235735 43235834 -139179408 - L1MD2 LINE L1 -228 6131 6028 2153 126 0 0 chr6 43236077 43236386 -139178856 - AluSx SINE Alu -3 309 1 294 29 0 0 chr6 43237717 43237752 -139177490 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1049 291 18 78 chr6 43237767 43238318 -139176924 - L2 LINE L2 -28 3285 2778 361 270 70 17 chr6 43239153 43239268 -139175974 + MIR3 SINE MIR 61 181 -27 469 139 0 17 chr6 43239407 43239522 -139175720 + (TG)n Simple_repeat Simple_repeat 1 113 0 745 253 241 0 chr6 43239543 43240099 -139175143 + L2 LINE L2 2570 3272 -41 462 114 0 0 chr6 43240991 43241061 -139174181 + (CAT)n Simple_repeat Simple_repeat 1 70 0 374 247 0 0 chr6 43241069 43241146 -139174096 + MIR SINE MIR 5 81 -181 1202 194 40 126 chr6 43241274 43241670 -139173572 - MLT1C LTR MaLR -1 466 28 2292 75 0 35 chr6 43241672 43241991 -139173251 + AluSc SINE Alu 1 308 -1 201 279 45 27 chr6 43242844 43242955 -139172287 + MIR SINE MIR 34 146 -62 1008 244 157 21 chr6 43243742 43244119 -139171123 - LTR16A LTR ERVL -7 443 16 480 315 108 15 chr6 43244148 43244291 -139170951 + L1MC4a LINE L1 5674 5802 -2006 2389 61 14 0 chr6 43244291 43244588 -139170654 + AluSp SINE Alu 1 301 -12 480 315 108 15 chr6 43244588 43244898 -139170344 + L1MC4a LINE L1 5802 6169 -1639 2155 111 3 3 chr6 43244953 43245260 -139169982 + AluSx SINE Alu 1 307 -5 350 241 0 13 chr6 43245489 43245568 -139169674 + MIR SINE MIR 69 146 -116 182 273 0 0 chr6 43245587 43245631 -139169611 + L2 LINE L2 3143 3186 -86 304 342 32 19 chr6 43245742 43245897 -139169345 + L1ME3A LINE L1 5784 5940 -230 202 235 20 20 chr6 43246341 43246392 -139168850 - MIR SINE MIR -122 86 36 191 246 29 58 chr6 43246427 43246496 -139168746 - MIR SINE MIR -60 148 82 583 279 124 86 chr6 43246763 43247294 -139167948 - L1MEd LINE L1 -4862 1257 695 5362 63 3 1 chr6 43247294 43247958 -139167284 - L1PA7 LINE L1 0 6154 5490 583 279 124 86 chr6 43247958 43248089 -139167153 - L1MEd LINE L1 -5424 695 570 181 258 30 30 chr6 43248533 43248599 -139166643 - L2 LINE L2 -203 3069 3004 317 307 34 0 chr6 43249324 43249473 -139165769 - MIR SINE MIR -71 137 33 1960 157 46 30 chr6 43249701 43250070 -139165172 - THE1C LTR MaLR 0 375 1 360 283 232 0 chr6 43251260 43251398 -139163844 + MER5A DNA MER1_type 7 176 -13 373 288 49 55 chr6 43252492 43252561 -139162681 + L1ME4a LINE L1 5722 5790 -331 2207 227 127 2 chr6 43252561 43253090 -139162152 - MLT1G1 LTR MaLR 0 595 1 373 288 49 55 chr6 43253090 43253183 -139162059 + L1ME4a LINE L1 5790 5883 -238 272 327 18 0 chr6 43253443 43253553 -139161689 + MER103 DNA DNA 54 165 -1 203 324 18 18 chr6 43253563 43253674 -139161568 + (TG)n Simple_repeat Simple_repeat 1 111 0 2286 98 0 7 chr6 43253975 43254282 -139160960 - AluSx SINE Alu -7 305 1 509 265 104 53 chr6 43254641 43254882 -139160360 + L1ME3A LINE L1 5643 5773 -397 2331 92 0 0 chr6 43254882 43255186 -139160056 - AluSp SINE Alu -9 304 1 509 265 104 53 chr6 43255186 43255371 -139159871 + L1ME3A LINE L1 5773 5947 -223 330 222 25 0 chr6 43255381 43255462 -139159780 - MLT1F1 LTR MaLR 0 567 485 1939 242 30 6 chr6 43255462 43255970 -139159272 - L1M4 LINE L1 -2244 3902 3383 605 285 7 0 chr6 43255970 43256114 -139159128 - MER58B DNA MER1_type 0 341 197 1526 220 96 37 chr6 43256117 43256553 -139158689 - MLT1C LTR MaLR 0 467 6 477 233 23 0 chr6 43256599 43256685 -139158557 - FLAM_A SINE Alu -53 89 2 262 366 69 8 chr6 43257051 43257182 -139158060 - L1MDa LINE L1 -6380 160 22 189 325 71 58 chr6 43257609 43257639 -139157603 + L2 LINE L2 3080 3108 -164 1993 141 0 6 chr6 43257639 43257951 -139157291 - AluSx SINE Alu -1 311 2 189 325 71 58 chr6 43257951 43258074 -139157168 + L2 LINE L2 3108 3235 -37 234 62 0 0 chr6 43258087 43258119 -139157123 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 274 251 229 11 chr6 43258182 43258357 -139156885 - MIR SINE MIR -3 259 47 1465 240 164 27 chr6 43258425 43258870 -139156372 + MLT1J LTR MaLR 5 510 -1 2145 111 0 0 chr6 43258957 43259254 -139155988 - AluSx SINE Alu -15 297 1 1108 291 47 43 chr6 43259434 43259877 -139155365 - MLT1J2 LTR MaLR -5 445 1 1130 243 136 13 chr6 43260195 43260683 -139154559 + L1MC4 LINE L1 7293 7808 0 305 325 87 58 chr6 43261008 43261319 -139153923 + L1MEd LINE L1 44 363 -5756 664 242 30 128 chr6 43261330 43261628 -139153614 + MLT1L LTR MaLR 100 465 -143 1980 82 4 0 chr6 43261677 43261934 -139153308 + AluSp SINE Alu 1 258 -55 189 281 0 61 chr6 43262293 43262375 -139152867 + MIR SINE MIR 107 183 -79 411 265 14 48 chr6 43262412 43262559 -139152683 - MIR SINE MIR -52 210 69 597 316 84 0 chr6 43262903 43263118 -139152124 + MIR SINE MIR 3 235 -27 764 181 96 24 chr6 43263694 43263860 -139151382 + MER20 DNA MER1_type 41 218 -1 193 203 0 43 chr6 43264073 43264142 -139151100 + CT-rich Low_complexity Low_complexity 1 66 0 414 282 27 0 chr6 43265149 43265259 -139149983 + MIR SINE MIR 60 172 -90 222 273 172 0 chr6 43265258 43265357 -139149885 - L2 LINE L2 -10 3262 3147 * 183 315 0 0 chr6 43265442 43265496 -139149746 - MIR SINE MIR 0 262 209 242 250 135 29 chr6 43265945 43266049 -139149193 + L2 LINE L2 3002 3116 -156 456 231 0 0 chr6 43266174 43266265 -139148977 + MIR SINE MIR 49 139 -123 1411 192 0 22 chr6 43266271 43266433 -139148809 - AluJo SINE Alu -20 292 137 2079 115 0 19 chr6 43266433 43266747 -139148495 - AluSg SINE Alu -2 308 1 1411 192 0 22 chr6 43266747 43266860 -139148382 - AluJo SINE Alu -175 137 23 229 269 0 65 chr6 43267134 43267227 -139148015 + MLT1K LTR MaLR 187 273 -315 396 261 7 70 chr6 43268477 43268619 -139146623 - L2 LINE L2 -1 3312 3180 349 228 13 13 chr6 43268817 43268896 -139146346 - MLT1J2 LTR MaLR -114 336 258 570 233 254 4 chr6 43269240 43269636 -139145606 - MLT1H1 LTR MaLR -5 550 3 1452 245 148 16 chr6 43269643 43269933 -139145309 - MLT1G1 LTR MaLR -18 577 327 195 42 0 0 chr6 43269933 43269957 -139145285 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 1452 245 148 16 chr6 43269957 43270173 -139145069 - MLT1G1 LTR MaLR -268 327 4 185 320 0 0 chr6 43270196 43270246 -139144996 - L2 LINE L2 0 3272 3223 263 292 28 0 chr6 43270772 43270844 -139144398 + L2 LINE L2 3240 3313 0 1461 272 46 32 chr6 43270871 43271367 -139143875 + MLT1J LTR MaLR 9 511 0 630 287 40 20 chr6 43271513 43271715 -139143527 - MLT1L LTR MaLR -88 527 322 253 62 42 0 chr6 43272238 43272286 -139142956 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 347 269 144 18 chr6 43272351 43272518 -139142724 - MIR3 SINE MIR -1 207 20 226 215 151 54 chr6 43272735 43272828 -139142414 + L3 LINE CR1 1418 1519 -58 242 302 60 26 chr6 43274211 43274327 -139140915 - MIR3 SINE MIR -11 197 78 198 263 45 83 chr6 43274687 43274820 -139140422 + L3b LINE CR1 1341 1468 -115 2242 104 0 22 chr6 43275382 43275700 -139139542 - AluSx SINE Alu 0 312 2 664 259 108 43 chr6 43275741 43275973 -139139269 - MIR SINE MIR -1 261 15 461 281 42 0 chr6 43276289 43276476 -139138766 + MIR SINE MIR 39 237 -25 315 353 56 19 chr6 43277319 43277588 -139137654 - L1ME4a LINE L1 0 6121 5843 319 344 15 7 chr6 43278293 43278441 -139136801 + MIR3 SINE MIR 10 157 -64 1978 153 0 0 chr6 43278448 43278749 -139136493 + AluSx SINE Alu 1 301 -11 1446 241 143 21 chr6 43279386 43279856 -139135386 - MLT1H1 LTR MaLR -7 583 1 185 239 56 84 chr6 43280225 43280296 -139134946 + MIR SINE MIR 112 180 -82 230 306 16 0 chr6 43280445 43280507 -139134735 + L3 LINE CR1 1512 1574 -3 375 273 119 39 chr6 43280788 43281074 -139134168 + L2 LINE L2 2932 3240 -73 263 283 0 0 chr6 43281833 43281893 -139133349 + MIR3 SINE MIR 128 187 -21 322 113 14 14 chr6 43281934 43282005 -139133237 + (CA)n Simple_repeat Simple_repeat 2 72 0 417 240 99 8 chr6 43282599 43282720 -139132522 + MIR3 SINE MIR 62 193 -15 196 272 158 9 chr6 43283576 43283690 -139131552 - L2 LINE L2 -5 3267 3137 612 235 84 12 chr6 43283827 43283993 -139131249 + MER5B DNA MER1_type 1 178 0 566 230 11 80 chr6 43286431 43286618 -139128624 + MIR SINE MIR 87 260 -2 381 305 153 6 chr6 43288001 43288178 -139127064 + L3 LINE CR1 1306 1508 -69 510 217 445 7 chr6 43288180 43288592 -139126650 + L2 LINE L2 2712 3313 0 268 164 36 0 chr6 43288612 43288667 -139126575 + L3 LINE CR1 1514 1570 -7 424 269 88 26 chr6 43288868 43289061 -139126181 - L2 LINE L2 -193 3079 2875 1225 147 115 9 chr6 43289147 43289365 -139125877 - AluJo SINE Alu -68 244 4 234 314 8 42 chr6 43290758 43290876 -139124366 + L1MC/D LINE L1 5798 5911 -1897 228 67 0 0 chr6 43290889 43290919 -139124323 + (TA)n Simple_repeat Simple_repeat 1 30 0 2020 90 43 20 chr6 43290923 43291223 -139124019 - AluSx SINE Alu -5 307 1 292 330 122 0 chr6 43291551 43291666 -139123576 + L2 LINE L2 3134 3262 -10 205 309 236 0 chr6 43291823 43291946 -139123296 + MIR SINE MIR 77 228 -34 2180 120 3 0 chr6 43292015 43292323 -139122919 - AluSq SINE Alu -4 309 1 383 291 35 0 chr6 43292797 43292938 -139122304 + (CACCC)n Simple_repeat Simple_repeat 3 148 0 1963 215 20 16 chr6 43293570 43294004 -139121238 - Charlie4a DNA MER1_type -1453 508 70 2195 100 3 7 chr6 43294004 43294305 -139120937 + AluSx SINE Alu 1 300 -12 1963 215 20 16 chr6 43294305 43294359 -139120883 - Charlie4a DNA MER1_type -1891 70 18 205 250 13 79 chr6 43295169 43295245 -139119997 + MIR SINE MIR 118 188 -74 * 716 233 105 22 chr6 43295244 43295472 -139119770 - MIR SINE MIR 0 262 16 216 346 6 34 chr6 43296119 43296298 -139118944 + GA-rich Low_complexity Low_complexity 1 174 0 257 320 21 21 chr6 43296383 43296544 -139118698 + G-rich Low_complexity Low_complexity 1 161 0 201 260 0 104 chr6 43296619 43296715 -139118527 + L3 LINE CR1 1436 1521 -56 929 236 59 0 chr6 43298308 43298528 -139116714 + MIR SINE MIR 2 234 -28 1517 221 105 20 chr6 43299540 43299978 -139115264 + MLT1J LTR MaLR 6 480 -31 237 287 6 79 chr6 43300188 43300352 -139114890 + ORSL DNA AcHobo 124 275 0 466 273 80 34 chr6 43300473 43300649 -139114593 + L2 LINE L2 3130 3313 0 707 233 90 6 chr6 43301335 43301541 -139113701 - MIR SINE MIR -28 234 19 315 342 33 33 chr6 43301557 43301709 -139113533 + HAL1b LINE L1 1190 1341 -7 334 68 0 0 chr6 43302291 43302335 -139112907 + LTR23 LTR ERV1 320 363 -74 202 167 0 62 chr6 43303395 43303443 -139111799 + G-rich Low_complexity Low_complexity 5 49 0 2274 106 0 0 chr6 43304822 43305125 -139110117 - AluSc SINE Alu -4 305 3 2003 148 0 0 chr6 43305127 43305424 -139109818 - AluJb SINE Alu -15 297 1 301 280 51 4 chr6 43305526 43305646 -139109596 + MIR SINE MIR 35 146 -62 852 246 42 9 chr6 43305701 43305916 -139109326 + L1ME3 LINE L1 5941 6162 0 417 328 8 0 chr6 43305922 43306044 -139109198 + MER5B DNA MER1_type 38 160 -18 331 281 91 25 chr6 43306626 43306747 -139108495 + MIR SINE MIR 17 145 -63 2170 89 10 0 chr6 43307441 43307743 -139107499 + AluSx SINE Alu 1 305 -7 1456 186 165 0 chr6 43307744 43308072 -139107170 + MLT1F1 LTR MaLR 186 567 0 680 299 39 48 chr6 43308701 43308774 -139106468 - L1MEd LINE L1 -4863 1256 1184 1486 154 92 31 chr6 43308774 43309067 -139106175 - AluJo SINE Alu -1 311 1 680 299 39 48 chr6 43309067 43309555 -139105687 - L1MEd LINE L1 -4935 1184 700 298 296 139 9 chr6 43310190 43310305 -139104937 + L2 LINE L2 3179 3308 -5 478 323 62 55 chr6 43310321 43310624 -139104618 - L2 LINE L2 -341 2973 2665 1832 138 3 26 chr6 43310624 43310929 -139104313 + AluJb SINE Alu 1 298 -14 478 323 62 55 chr6 43310929 43311043 -139104199 - L2 LINE L2 -649 2665 2553 1365 169 6 91 chr6 43311086 43311406 -139103836 + AluJo SINE Alu 10 302 -10 192 365 52 0 chr6 43311422 43311518 -139103724 - L2 LINE L2 -817 2497 2397 428 296 84 19 chr6 43312190 43312403 -139102839 + MIR SINE MIR 8 234 -28 197 325 12 12 chr6 43312495 43312578 -139102664 - L3b LINE CR1 -346 1237 1155 677 209 109 99 chr6 43313258 43313352 -139101890 + LTR16A1 LTR ERVL 150 242 -215 315 0 0 0 chr6 43313352 43313387 -139101855 + (CA)n Simple_repeat Simple_repeat 2 36 0 677 209 109 99 chr6 43313387 43313594 -139101648 + LTR16A1 LTR ERVL 242 454 -3 576 0 0 0 chr6 43313594 43313658 -139101584 + (CA)n Simple_repeat Simple_repeat 2 65 0 3874 180 12 25 chr6 43314117 43314817 -139100425 + MER49 LTR ERV1 180 871 -52 2260 83 0 43 chr6 43314817 43315141 -139100101 + AluSg SINE Alu 1 310 0 3874 180 12 25 chr6 43315141 43315194 -139100048 + MER49 LTR ERV1 871 923 0 285 164 73 0 chr6 43315403 43315458 -139099784 + L2 LINE L2 3214 3272 0 243 272 26 53 chr6 43315678 43315792 -139099450 + MIR SINE MIR 110 220 -42 479 252 50 8 chr6 43316088 43316207 -139099035 + MIR3 SINE MIR 83 206 -2 2032 136 7 0 chr6 43316722 43317016 -139098226 + AluJo SINE Alu 1 296 -16 1347 231 20 137 chr6 43317064 43317587 -139097655 + L1ME3 LINE L1 5550 5976 -186 2269 107 0 0 chr6 43317587 43317897 -139097345 - AluSg SINE Alu 0 310 1 1347 231 20 137 chr6 43317897 43318060 -139097182 + L1ME3 LINE L1 5976 6156 -6 309 280 82 39 chr6 43318547 43318754 -139096488 - L2 LINE L2 -38 3275 3060 664 234 84 66 chr6 43318759 43318986 -139096256 + MIR SINE MIR 20 250 -12 528 186 224 39 chr6 43319226 43319382 -139095860 + MIR SINE MIR 78 262 0 299 354 39 0 chr6 43319565 43319692 -139095550 - MIR3 SINE MIR -63 145 14 483 200 81 75 chr6 43319928 43320088 -139095154 - MER103 DNA DNA -2 164 4 1861 140 3 3 chr6 43320626 43320911 -139094331 + AluJb SINE Alu 17 301 -11 1535 142 68 21 chr6 43320920 43321201 -139094041 + AluJo SINE Alu 1 294 -18 461 265 108 0 chr6 43321729 43321895 -139093347 - MIR SINE MIR -3 259 76 211 329 14 0 chr6 43322763 43322833 -139092409 - L2 LINE L2 -16 3256 3186 2181 116 0 3 chr6 43323526 43323837 -139091405 + AluSx SINE Alu 2 311 -1 613 263 5 78 chr6 43323978 43324183 -139091059 + MIR SINE MIR 67 256 -6 223 286 70 53 chr6 43324682 43324850 -139090392 + MIR SINE MIR 72 249 -13 2130 117 7 0 chr6 43325368 43325677 -139089565 + AluSq SINE Alu 1 311 -2 521 353 23 23 chr6 43326002 43326263 -139088979 + L1ME LINE L1 5557 5817 -304 1144 260 104 48 chr6 43326942 43327691 -139087551 + L2 LINE L2 2410 3215 -98 535 311 87 5 chr6 43328475 43328694 -139086548 - MIR SINE MIR -24 238 2 180 244 24 0 chr6 43329277 43329318 -139085924 + L2 LINE L2 3209 3250 -22 214 202 50 143 chr6 43330899 43330954 -139084288 + MIR3 SINE MIR 95 136 -72 2021 116 3 0 chr6 43330954 43331261 -139083981 + AluSx SINE Alu 1 308 0 214 202 50 143 chr6 43331261 43331323 -139083919 + MIR3 SINE MIR 136 202 -6 309 291 94 0 chr6 43331340 43331457 -139083785 + MIR3 SINE MIR 81 208 0 393 233 0 11 chr6 43331466 43331556 -139083686 + L2 LINE L2 3225 3313 0 1915 231 62 13 chr6 43332176 43332643 -139082599 + LTR16C LTR ERVL 1 490 -1 286 244 56 11 chr6 43333311 43333401 -139081841 + MIR SINE MIR 46 139 -69 1645 164 38 3 chr6 43333771 43334064 -139081178 + AluSx SINE Alu 1 303 -9 689 242 96 90 chr6 43334753 43335068 -139080174 + MLT1J LTR MaLR 1 320 -191 800 185 6 39 chr6 43335068 43335184 -139080058 - MER5B DNA MER1_type -4 174 65 2267 88 0 0 chr6 43335184 43335478 -139079764 - AluSq SINE Alu -19 294 1 800 185 6 39 chr6 43335478 43335539 -139079703 - MER5B DNA MER1_type -113 65 3 689 242 96 90 chr6 43335539 43335578 -139079664 + MLT1J LTR MaLR 320 357 -154 429 301 37 15 chr6 43335764 43335900 -139079342 + MIR3 SINE MIR 16 154 -54 273 295 107 9 chr6 43335908 43336020 -139079222 + L2 LINE L2 3139 3261 -11 1743 128 10 47 chr6 43336028 43336326 -139078916 + AluJo SINE Alu 4 290 -22 892 145 0 0 chr6 43336385 43336523 -139078719 - FLAM_C SINE Alu -5 138 1 584 280 13 0 chr6 43336957 43337114 -139078128 - MER5B DNA MER1_type -18 160 2 191 222 19 0 chr6 43337546 43337600 -139077642 - MIR SINE MIR -72 136 82 290 258 225 20 chr6 43337663 43337814 -139077428 + MER5A DNA MER1_type 7 188 -1 338 313 28 56 chr6 43337856 43338140 -139077102 + L2 LINE L2 2034 2309 -1005 587 312 77 5 chr6 43338204 43338425 -139076817 - MIR SINE MIR -13 249 13 1317 227 95 0 chr6 43338580 43338955 -139076287 + L2 LINE L2 2598 2996 -317 2144 109 10 0 chr6 43339248 43339541 -139075701 + AluSc SINE Alu 1 296 -13 329 292 135 11 chr6 43339568 43339746 -139075496 + L2 LINE L2 2848 3047 -225 238 319 11 33 chr6 43339852 43339943 -139075299 + L2 LINE L2 3184 3272 0 403 313 0 4 chr6 43339971 43340097 -139075145 + MIR SINE MIR 33 154 -62 200 236 42 42 chr6 43341164 43341236 -139074006 + G-rich Low_complexity Low_complexity 3 74 0 283 260 27 14 chr6 43343121 43343194 -139072048 - L2 LINE L2 -1 3271 3198 43 81 0 0 chr6 43346500 43346599 -139068643 + GC_rich Low_complexity Low_complexity 1 99 0 213 278 22 22 chr6 43346673 43346763 -139068479 + CT-rich Low_complexity Low_complexity 1 90 0 1074 75 0 32 chr6 43346908 43347094 -139068148 + (TC)n Simple_repeat Simple_repeat 1 180 0 410 186 124 44 chr6 43348083 43348196 -139067046 + L1ME1 LINE L1 6037 6158 -6 222 191 0 0 chr6 43349370 43349412 -139065830 + MIR SINE MIR 103 144 -118 382 275 192 0 chr6 43349480 43349647 -139065595 - MIR SINE MIR -62 200 2 471 78 0 0 chr6 43349915 43349979 -139065263 + (TA)n Simple_repeat Simple_repeat 2 65 0 204 121 30 0 chr6 43350178 43350211 -139065031 + GA-rich Low_complexity Low_complexity 2 35 0 245 174 22 0 chr6 43350598 43350644 -139064598 + L2 LINE L2 3192 3238 -75 1069 266 128 12 chr6 43350645 43351251 -139063991 - L2 LINE L2 0 3313 2657 335 269 0 0 chr6 43351251 43351329 -139063913 + L2 LINE L2 3195 3272 0 287 350 0 42 chr6 43351447 43351567 -139063675 - MIR SINE MIR -42 220 106 254 237 82 96 chr6 43352087 43352222 -139063020 - L2 LINE L2 -1 3312 3180 1314 144 0 147 chr6 43352435 43352747 -139062495 - AluJb SINE Alu -2 310 45 1721 155 3 64 chr6 43353273 43353602 -139061640 + AluJb SINE Alu 1 309 -3 353 206 167 48 chr6 43354984 43355110 -139060132 - MIR SINE MIR -110 152 12 672 157 58 0 chr6 43355200 43355321 -139059921 - MER3 DNA MER1_type -81 128 1 692 253 75 15 chr6 43355322 43355426 -139059816 + MIR SINE MIR 40 136 -126 1856 146 17 20 chr6 43355426 43355720 -139059522 + AluJo SINE Alu 1 293 -19 692 253 75 15 chr6 43355720 43355824 -139059418 + MIR SINE MIR 136 259 -3 279 315 27 18 chr6 43355827 43355938 -139059304 - MIR3 SINE MIR -39 169 58 332 233 14 0 chr6 43356080 43356153 -139059089 + AluS SINE Alu 1 74 -229 306 232 144 24 chr6 43356231 43356356 -139058886 + L2 LINE L2 3174 3313 0 251 193 18 18 chr6 43356357 43356414 -139058828 - MIR SINE MIR -63 145 89 492 256 48 6 chr6 43357555 43357723 -139057519 - L1ME4a LINE L1 -1 6120 5946 1411 167 9 5 chr6 43357971 43358193 -139057049 - AluJo SINE Alu -5 307 85 828 127 0 0 chr6 43358204 43358314 -139056928 + FRAM SINE Alu 54 163 -13 224 222 0 0 chr6 43358314 43358359 -139056883 + MIR SINE MIR 153 197 -65 1369 234 50 8 chr6 43358376 43358739 -139056503 + LTR16C LTR ERVL 114 491 0 424 294 132 15 chr6 43358739 43358943 -139056299 - L2 LINE L2 -167 3146 2919 279 125 62 0 chr6 43359521 43359569 -139055673 - L2 LINE L2 0 3313 3263 305 177 97 0 chr6 43359674 43359736 -139055506 - MER63 DNA MER1_type -142 694 1 197 298 128 14 chr6 43359937 43360078 -139055164 - L2 LINE L2 -212 3060 2904 228 277 108 0 chr6 43361038 43361121 -139054121 - MIR SINE MIR -60 202 111 222 278 28 0 chr6 43361186 43361258 -139053984 - MIR SINE MIR -63 199 126 495 185 0 11 chr6 43361454 43361546 -139053696 + MIR SINE MIR 67 157 -105 325 274 20 0 chr6 43361549 43361651 -139053591 - MIR SINE MIR -1 261 158 2300 110 0 22 chr6 43361767 43362086 -139053156 + AluSx SINE Alu 1 312 0 419 272 48 7 chr6 43362556 43362703 -139052539 + L2 LINE L2 2906 3058 -214 883 256 29 20 chr6 43362813 43363059 -139052183 + MIR SINE MIR 15 262 0 872 234 24 28 chr6 43363183 43363435 -139051807 - LTR67 LTR ERVL 0 557 307 464 227 45 9 chr6 43363441 43363551 -139051691 - MER115 DNA AcHobo -7 686 573 1520 227 161 36 chr6 43363557 43364086 -139051156 - MLT1G1 LTR MaLR 0 595 1 2012 273 52 4 chr6 43364094 43364629 -139050613 - MER115 DNA AcHobo -131 562 2 632 293 156 11 chr6 43364631 43364894 -139050348 - LTR67 LTR ERVL -254 303 3 647 300 112 12 chr6 43365147 43365470 -139049772 - ERVL LTR ERVL -241 5523 5169 2158 98 0 39 chr6 43365470 43365775 -139049467 - AluSp SINE Alu -20 293 1 578 261 24 0 chr6 43365900 43366065 -139049177 - ERVL LTR ERVL -766 4998 4830 266 298 77 61 chr6 43366074 43366255 -139048987 - L2 LINE L2 -1049 2265 2082 2898 178 22 11 chr6 43366432 43366976 -139048266 - MER99 DNA DNA -65 763 214 1193 146 0 0 chr6 43367297 43367468 -139047774 + FRAM SINE Alu 1 168 -8 1865 168 3 0 chr6 43367528 43367826 -139047416 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr6 43367846 43367870 -139047372 + AT_rich Low_complexity Low_complexity 1 24 0 1584 212 14 3 chr6 43368158 43368464 -139046778 - AluJo SINE Alu 0 309 1 2099 115 18 0 chr6 43368515 43368828 -139046414 + AluSx SINE Alu 1 318 0 382 263 40 0 chr6 43368856 43368955 -139046287 - MER99 DNA DNA -725 103 1 470 248 29 15 chr6 43369567 43369704 -139045538 - MLT1G LTR MaLR -8 582 444 568 297 12 12 chr6 43369965 43370130 -139045112 + MER63A DNA MER1_type 43 207 -3 484 258 0 63 chr6 43370132 43370291 -139044951 - MLT1F LTR MaLR -374 168 20 212 318 149 0 chr6 43370354 43370461 -139044781 - MIR SINE MIR -32 230 108 727 239 53 38 chr6 43370718 43370817 -139044425 - MIR SINE MIR -2 260 164 1637 176 32 11 chr6 43370817 43371130 -139044112 - AluJb SINE Alu 0 319 1 727 239 53 38 chr6 43371130 43371238 -139044004 - MIR SINE MIR -98 164 49 510 174 17 43 chr6 43371352 43371467 -139043775 + Charlie4 DNA MER1_type 1846 1957 -4 216 268 18 0 chr6 43372536 43372592 -139042650 - L2 LINE L2 -76 3196 3140 530 270 44 0 chr6 43373367 43373562 -139041680 - MIR SINE MIR -49 213 5 279 278 260 29 chr6 43374248 43374421 -139040821 + L3 LINE CR1 1364 1576 -1 2159 123 20 0 chr6 43375286 43375578 -139039664 + AluSx SINE Alu 1 298 -14 1970 148 0 26 chr6 43375588 43375899 -139039343 + AluJb SINE Alu 1 303 -9 931 114 0 0 chr6 43375931 43376062 -139039180 + FLAM_C SINE Alu 1 131 -2 308 315 31 15 chr6 43376089 43376219 -139039023 + L1MC5 LINE L1 7782 7913 -48 2374 108 0 0 chr6 43376236 43376543 -139038699 - AluSx SINE Alu -5 307 1 1184 235 70 27 chr6 43377611 43377985 -139037257 - LTR16A1 LTR ERVL -2 455 66 206 373 38 43 chr6 43378257 43378413 -139036829 - L2 LINE L2 -838 2476 2320 1306 209 121 37 chr6 43378413 43378844 -139036398 - MLT1C LTR MaLR 0 467 1 206 373 38 43 chr6 43378844 43378896 -139036346 - L2 LINE L2 -994 2320 2269 2274 118 0 13 chr6 43378913 43379226 -139036016 + AluSc SINE Alu 1 309 0 437 262 9 9 chr6 43379654 43379761 -139035481 - L2 LINE L2 -19 3294 3188 1887 175 0 6 chr6 43379794 43380108 -139035134 - AluJo SINE Alu 0 312 1 389 276 51 0 chr6 43380305 43380403 -139034839 + MIR3 SINE MIR 91 193 -15 296 335 35 20 chr6 43380874 43381026 -139034216 - MIR3 SINE MIR -15 193 39 2185 116 0 17 chr6 43381196 43381497 -139033745 - AluSx SINE Alu -16 296 1 628 275 71 49 chr6 43381517 43381984 -139033258 + LTR33A LTR ERVL 40 520 -3 1093 185 188 71 chr6 43382149 43382226 -139033016 + MER119 DNA MER1_type 2 69 -514 2035 162 0 3 chr6 43382226 43382529 -139032713 - AluJb SINE Alu -10 302 1 1093 185 188 71 chr6 43382529 43382728 -139032514 + MER119 DNA MER1_type 69 329 -254 2224 115 0 3 chr6 43382728 43383047 -139032195 + AluSx SINE Alu 1 318 0 1093 185 188 71 chr6 43383047 43383107 -139032135 + MER119 DNA MER1_type 329 381 -202 2272 128 0 3 chr6 43383107 43383419 -139031823 + AluSx SINE Alu 1 311 -1 1069 180 0 11 chr6 43383424 43383602 -139031640 + FRAM SINE Alu 1 176 0 1050 149 20 0 chr6 43383602 43383803 -139031439 + MER119 DNA MER1_type 378 582 -1 214 184 41 20 chr6 43383832 43383881 -139031361 - L2 LINE L2 -81 3232 3183 898 196 123 54 chr6 43383886 43384426 -139030816 - MLT1E LTR MaLR 0 593 8 426 359 38 8 chr6 43384508 43384745 -139030497 - L2 LINE L2 -203 3069 2826 682 280 16 1 chr6 43384841 43385042 -139030200 + L1ME3 LINE L1 5971 6334 0 204 385 27 58 chr6 43385177 43385437 -139029805 - L2 LINE L2 -1 3271 3020 899 239 160 87 chr6 43385460 43385693 -139029549 + MLT1J LTR MaLR 7 222 -289 2023 127 0 42 chr6 43385693 43386000 -139029242 + AluSx SINE Alu 1 294 -18 899 239 160 87 chr6 43386000 43386235 -139029007 + MLT1J LTR MaLR 222 509 -2 2053 160 64 35 chr6 43386330 43386736 -139028506 - MSTB1 LTR MaLR 0 432 15 243 308 98 73 chr6 43386879 43387461 -139027781 - L2 LINE L2 -661 2653 2052 2301 119 3 0 chr6 43387461 43387771 -139027471 + AluSq SINE Alu 1 311 -2 243 308 98 73 chr6 43387771 43387841 -139027401 - L2 LINE L2 -1262 2052 1985 2249 205 54 0 chr6 43388965 43389413 -139025829 + MER70A LTR ERVL 1 472 0 236 322 113 9 chr6 43389493 43389608 -139025634 - MIR SINE MIR 0 262 136 357 229 73 52 chr6 43389609 43389801 -139025441 + L1MC5 LINE L1 7734 7929 -32 1986 123 10 50 chr6 43389807 43390109 -139025133 + AluJo SINE Alu 1 290 -22 203 204 93 0 chr6 43390135 43390189 -139025053 + MIR SINE MIR 204 262 0 228 189 0 0 chr6 43390206 43390243 -139024999 + Alu SINE Alu 1 37 -264 1594 125 8 12 chr6 43390243 43390483 -139024759 + AluSg/x SINE Alu 72 310 0 2158 78 60 7 chr6 43391502 43391783 -139023459 + AluSx SINE Alu 1 296 -16 189 345 0 0 chr6 43393068 43393123 -139022119 - MIR SINE MIR -117 145 91 284 224 35 12 chr6 43393191 43393276 -139021966 + MIR SINE MIR 133 219 -43 225 366 50 0 chr6 43393276 43393377 -139021865 - L2 LINE L2 -19 3294 3189 2438 48 10 10 chr6 43393444 43393737 -139021505 + AluY SINE Alu 1 293 -18 23 0 0 0 chr6 43394081 43394104 -139021138 + AT_rich Low_complexity Low_complexity 1 23 0 683 109 0 0 chr6 43394180 43394281 -139020961 - FLAM_A SINE Alu 0 142 42 2381 90 3 0 chr6 43394281 43394581 -139020661 - AluSg SINE Alu -9 301 1 974 279 39 59 chr6 43394581 43394968 -139020274 + MLT1J LTR MaLR 125 503 -8 1274 82 13 0 chr6 43395016 43395175 -139020067 - AluY SINE Alu -150 161 1 21 0 0 0 chr6 43395268 43395289 -139019953 + AT_rich Low_complexity Low_complexity 1 21 0 1902 156 7 3 chr6 43395289 43395572 -139019670 - AluJb SINE Alu -20 292 9 275 304 55 72 chr6 43395575 43395812 -139019430 - L1MC/D LINE L1 -1976 5832 5600 240 122 0 0 chr6 43395898 43395939 -139019303 + (TCC)n Simple_repeat Simple_repeat 3 43 0 2487 84 0 10 chr6 43396309 43396617 -139018625 - AluSg SINE Alu -5 305 1 209 214 0 0 chr6 43397285 43397327 -139017915 - MIR SINE MIR -108 154 113 305 355 63 39 chr6 43397410 43397469 -139017773 + L2 LINE L2 2932 2988 -284 1831 235 24 32 chr6 43397469 43397962 -139017280 + LTR16C LTR ERVL 3 491 0 305 355 63 39 chr6 43397962 43398163 -139017079 + L2 LINE L2 2988 3204 -68 2101 124 24 34 chr6 43398163 43398542 -139016700 + THE1C LTR MaLR 1 375 0 305 355 63 39 chr6 43398542 43398612 -139016630 + L2 LINE L2 3204 3271 -1 187 98 59 39 chr6 43398901 43398952 -139016290 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 1093 71 0 82 chr6 43399007 43399069 -139016173 + L1PA8 LINE L1 6005 6071 -101 2385 106 0 0 chr6 43399069 43399381 -139015861 + AluSx SINE Alu 1 312 0 1093 71 0 82 chr6 43399381 43399500 -139015742 + L1PA8 LINE L1 6071 6171 -1 2826 29 0 0 chr6 43399687 43399996 -139015246 - AluY SINE Alu -2 309 1 703 278 75 9 chr6 43400123 43400350 -139014892 - MIR SINE MIR -3 259 18 671 263 142 13 chr6 43401407 43401597 -139013645 - L2 LINE L2 0 3313 3086 823 158 0 0 chr6 43401597 43401730 -139013512 + FLAM_A SINE Alu 1 133 0 671 263 142 13 chr6 43401730 43401771 -139013471 - L2 LINE L2 -227 3086 3052 631 196 14 7 chr6 43401787 43401925 -139013317 + LTR33 LTR ERVL 5 143 -378 453 293 142 0 chr6 43402227 43402439 -139012803 - L2 LINE L2 -254 3059 2818 301 304 47 0 chr6 43402470 43402641 -139012601 + (CGGG)n Simple_repeat Simple_repeat 2 180 0 748 250 129 73 chr6 43402703 43403128 -139012114 - L2 LINE L2 -386 2928 2463 2295 109 0 3 chr6 43403128 43403430 -139011812 + AluSx SINE Alu 9 309 -3 748 250 129 73 chr6 43403430 43403564 -139011678 - L2 LINE L2 -851 2463 2338 279 250 259 0 chr6 43404279 43404387 -139010855 - MIR SINE MIR -12 250 115 411 289 0 0 chr6 43405357 43405447 -139009795 + L3 LINE CR1 434 523 -1054 266 261 42 76 chr6 43405428 43405547 -139009695 + MIR SINE MIR 6 120 -142 * 521 239 113 72 chr6 43405619 43405841 -139009401 - MIR SINE MIR -3 259 29 378 308 63 6 chr6 43405979 43406139 -139009103 - MIR SINE MIR -56 206 39 3028 216 101 8 chr6 43406443 43407278 -139007964 + L1ME3A LINE L1 5259 6170 0 1348 305 54 10 chr6 43407319 43407798 -139007444 + L3 LINE CR1 371 870 -707 286 250 60 60 chr6 43407846 43407962 -139007280 + L2 LINE L2 3156 3271 -1 250 294 181 6 chr6 43408036 43408196 -139007046 + L3 LINE CR1 1041 1228 -349 2014 231 112 4 chr6 43408278 43408768 -139006474 + MER69 DNA AcHobo 1 543 -1983 989 131 0 0 chr6 43408891 43409036 -139006206 - AluSc SINE Alu 0 309 165 343 89 0 0 chr6 43409371 43409427 -139005815 - L1MB2 LINE L1 0 6171 6116 566 165 0 0 chr6 43409428 43409519 -139005723 - AluSg/x SINE Alu -17 293 203 1020 150 0 0 chr6 43409519 43409666 -139005576 - AluJo SINE Alu -165 147 1 1301 172 4 4 chr6 43409666 43409910 -139005332 - L1MB2 LINE L1 -41 6130 5887 675 244 21 16 chr6 43409941 43410134 -139005108 - L1ME3 LINE L1 -10 6152 5959 287 260 110 31 chr6 43410164 43410187 -139005055 + MIR SINE MIR 46 66 -196 1465 166 0 4 chr6 43410187 43410416 -139004826 - AluJo SINE Alu -84 228 1 287 260 110 31 chr6 43410416 43410519 -139004723 + MIR SINE MIR 66 182 -80 677 236 62 0 chr6 43410877 43411055 -139004187 - MER5A DNA MER1_type 0 189 1 1162 294 72 5 chr6 43411056 43411484 -139003758 + LTR16A1 LTR ERVL 1 457 0 202 281 177 10 chr6 43411984 43412080 -139003162 - MIR SINE MIR -63 145 34 2107 135 0 10 chr6 43412611 43412908 -139002334 + AluJb SINE Alu 1 294 -18 646 223 36 0 chr6 43412908 43413047 -139002195 + MIR SINE MIR 104 247 -15 513 253 46 11 chr6 43413059 43413233 -139002009 - MER104 DNA Tc2 0 180 1 216 286 16 16 chr6 43413265 43413328 -139001914 + L2 LINE L2 3251 3313 0 2513 93 0 0 chr6 43413721 43414033 -139001209 - AluSx SINE Alu 0 312 1 438 301 42 7 chr6 43414074 43414217 -139001025 + MIR SINE MIR 51 198 -64 209 356 0 0 chr6 43414230 43414320 -139000922 + CT-rich Low_complexity Low_complexity 1 90 0 24 0 0 0 chr6 43414557 43414581 -139000661 + AT_rich Low_complexity Low_complexity 1 24 0 2046 115 36 26 chr6 43414891 43415196 -139000046 + AluSg SINE Alu 1 308 -2 1591 157 173 19 chr6 43415425 43415846 -138999396 - LTR54B LTR ERV1 -2 496 11 2252 107 0 0 chr6 43416233 43416522 -138998720 + AluSx SINE Alu 1 289 -23 899 159 8 0 chr6 43416524 43416656 -138998586 - AluJo/FLAM SINE Alu -179 133 1 2454 74 0 0 chr6 43416672 43416968 -138998274 - AluY SINE Alu -15 296 1 934 251 96 70 chr6 43417458 43417634 -138997608 + HAL1 LINE L1 3 173 -2334 2401 166 59 55 chr6 43417634 43417833 -138997409 + MLT2B2 LTR ERVL 3 200 -315 2432 86 7 0 chr6 43417833 43418135 -138997107 - AluSx SINE Alu -8 304 1 2401 166 59 55 chr6 43418135 43418446 -138996796 + MLT2B2 LTR ERVL 200 515 0 934 251 96 70 chr6 43418446 43418782 -138996460 + HAL1 LINE L1 173 528 -1979 523 202 10 0 chr6 43418782 43418886 -138996356 - Tigger5 DNA MER2_type 0 2323 2219 229 244 0 0 chr6 43418879 43418924 -138996318 - Tigger5 DNA MER2_type -2268 55 11 * 1489 172 19 83 chr6 43418937 43419025 -138996217 - AluJb SINE Alu 0 312 220 2479 61 0 3 chr6 43419025 43419318 -138995924 - AluY SINE Alu -19 292 1 1489 172 19 83 chr6 43419318 43419554 -138995688 - AluJb SINE Alu -92 220 9 994 162 12 35 chr6 43419588 43419761 -138995481 - AluJb SINE Alu -9 303 135 2365 108 0 3 chr6 43419762 43420067 -138995175 - AluSx SINE Alu -8 304 1 1318 222 78 40 chr6 43420069 43420459 -138994783 - MLT1C LTR MaLR 0 467 93 2453 86 0 0 chr6 43420459 43420751 -138994491 + AluSg SINE Alu 1 292 -18 1318 222 78 40 chr6 43420751 43420772 -138994470 - MLT1C LTR MaLR -374 93 74 2570 78 0 0 chr6 43420772 43421079 -138994163 + AluY SINE Alu 1 307 -4 1318 222 78 40 chr6 43421079 43421140 -138994102 - MLT1C LTR MaLR -393 74 5 4056 248 49 71 chr6 43421140 43421695 -138993547 + HAL1 LINE L1 512 1078 -1429 2335 53 3 11 chr6 43421695 43422010 -138993232 + AluY SINE Alu 1 313 0 4056 248 49 71 chr6 43422010 43422196 -138993046 + HAL1 LINE L1 1078 1267 -1240 684 168 0 0 chr6 43422196 43422315 -138992927 + FLAM_C SINE Alu 5 123 -10 4056 248 49 71 chr6 43422315 43422386 -138992856 + HAL1 LINE L1 1267 1338 -1169 2346 107 0 0 chr6 43422386 43422694 -138992548 + AluSx SINE Alu 4 311 -1 4056 248 49 71 chr6 43422694 43423360 -138991882 + HAL1 LINE L1 1338 2017 -490 1832 158 7 26 chr6 43423360 43423670 -138991572 + AluJo SINE Alu 1 304 -8 4056 248 49 71 chr6 43423670 43423710 -138991532 + HAL1 LINE L1 2017 2056 -451 2529 74 0 0 chr6 43423710 43424006 -138991236 - AluY SINE Alu -15 296 1 4056 248 49 71 chr6 43424006 43424184 -138991058 + HAL1 LINE L1 2056 2236 -271 584 212 35 0 chr6 43424184 43424297 -138990945 + FLAM_A SINE Alu 1 117 -16 4056 248 49 71 chr6 43424297 43424625 -138990617 + HAL1 LINE L1 2236 2497 -10 2325 100 0 0 chr6 43424730 43425019 -138990223 - AluSx SINE Alu -23 289 1 203 258 15 15 chr6 43425061 43425127 -138990115 + CT-rich Low_complexity Low_complexity 1 66 0 653 182 55 55 chr6 43425312 43425355 -138989887 - MER96B DNA MER1_type? -236 181 139 1823 207 19 68 chr6 43425355 43425886 -138989356 - MLT1D LTR MaLR 0 505 1 653 182 55 55 chr6 43425886 43426023 -138989219 - MER96B DNA MER1_type? -277 140 1 239 231 92 0 chr6 43426823 43426888 -138988354 - MIR SINE MIR -70 192 122 240 241 0 0 chr6 43429047 43429101 -138986141 - MIR SINE MIR -73 135 82 2338 113 0 0 chr6 43429664 43429964 -138985278 - AluSc SINE Alu -9 300 1 1270 104 0 0 chr6 43430194 43430358 -138984884 - AluSg/x SINE Alu -17 293 130 638 268 42 21 chr6 43430460 43430650 -138984592 - MIR SINE MIR -3 259 66 1161 233 30 3 chr6 43430655 43430951 -138984291 + L1ME3 LINE L1 5683 5986 -176 240 111 0 0 chr6 43430951 43430987 -138984255 + AluSx SINE Alu 1 36 -263 2263 101 0 0 chr6 43430987 43431274 -138983968 - AluSc SINE Alu -2 307 21 2031 108 11 14 chr6 43431282 43431569 -138983673 + AluSx SINE Alu 27 312 0 452 191 17 52 chr6 43431621 43431736 -138983506 + L1ME3 LINE L1 6012 6122 -40 239 283 19 28 chr6 43432352 43432496 -138982746 + CT-rich Low_complexity Low_complexity 1 142 0 283 282 86 37 chr6 43432984 43433147 -138982095 - MIR SINE MIR -6 256 86 989 220 44 38 chr6 43433240 43433660 -138981582 - LTR33 LTR ERVL 0 521 47 275 321 38 31 chr6 43434320 43434479 -138980763 + L2 LINE L2 2627 2786 -528 339 254 49 49 chr6 43434720 43434842 -138980400 + L2 LINE L2 3165 3286 -27 181 204 45 0 chr6 43434816 43434860 -138980382 + MIR SINE MIR 216 261 -1 * 2174 112 3 3 chr6 43434943 43435238 -138980004 + AluSx SINE Alu 1 295 -17 2086 139 0 16 chr6 43435422 43435739 -138979503 + AluSx SINE Alu 1 312 0 241 257 92 46 chr6 43436070 43436179 -138979063 + L3b LINE CR1 1279 1392 -191 581 189 42 28 chr6 43436184 43436327 -138978915 - L1ME2 LINE L1 -236 5928 5784 249 289 52 0 chr6 43436957 43437054 -138978188 + MIR SINE MIR 42 143 -65 1792 208 15 86 chr6 43437490 43437893 -138977349 - L1ME3 LINE L1 0 6162 5732 1752 160 35 45 chr6 43437893 43438083 -138977159 - AluJo SINE Alu -3 309 122 2463 81 0 0 chr6 43438083 43438380 -138976862 + AluSx SINE Alu 1 297 -15 1752 160 35 45 chr6 43438380 43438501 -138976741 - AluJo SINE Alu -190 122 1 1792 208 15 86 chr6 43438501 43438566 -138976676 - L1ME3 LINE L1 -430 5732 5732 2440 101 0 3 chr6 43438566 43438874 -138976368 - AluSx SINE Alu -5 307 1 1792 208 15 86 chr6 43438874 43438927 -138976315 - L1ME3 LINE L1 -430 5732 5677 188 217 43 0 chr6 43439256 43439302 -138975940 - MIR SINE MIR -64 144 97 * 679 265 36 27 chr6 43439264 43439484 -138975758 + MIR SINE MIR 18 236 -26 183 206 0 0 chr6 43439509 43439543 -138975699 - MIR SINE MIR -165 97 64 287 301 19 58 chr6 43439608 43439711 -138975531 + L2 LINE L2 3174 3272 0 2293 95 0 70 chr6 43440849 43441176 -138974066 - AluSq SINE Alu -9 304 1 621 237 90 28 chr6 43441187 43441398 -138973844 - L1ME3 LINE L1 -2 6160 5937 190 250 89 0 chr6 43441429 43441485 -138973757 - MIR SINE MIR -70 138 78 263 271 0 14 chr6 43442285 43442355 -138972887 + MIR SINE MIR 49 117 -145 817 156 0 0 chr6 43442410 43442538 -138972704 + FLAM_C SINE Alu 1 128 -5 1857 149 0 0 chr6 43442542 43442804 -138972438 + AluSx SINE Alu 40 301 -11 31 0 0 0 chr6 43442804 43442835 -138972407 + AT_rich Low_complexity Low_complexity 1 31 0 1039 255 140 42 chr6 43442835 43442989 -138972253 + MLT1J LTR MaLR 56 194 -317 2350 89 7 0 chr6 43442989 43443282 -138971960 + AluSc SINE Alu 1 295 -14 1039 255 140 42 chr6 43443282 43443535 -138971707 + MLT1J LTR MaLR 194 503 -8 229 194 194 73 chr6 43443539 43443663 -138971579 + MIR SINE MIR 111 249 -13 354 297 95 7 chr6 43443694 43443842 -138971400 - L2 LINE L2 -4 3268 3108 1887 157 41 0 chr6 43444095 43444388 -138970854 - AluJb SINE Alu -7 305 1 646 200 0 0 chr6 43444692 43444843 -138970399 + FLAM_A SINE Alu 1 133 0 269 313 0 0 chr6 43444854 43444937 -138970305 - MIR SINE MIR -16 246 164 991 189 0 0 chr6 43444937 43445101 -138970141 + FRAM SINE Alu 1 163 -13 523 272 89 0 chr6 43445101 43445259 -138969983 - MIR SINE MIR -88 174 3 2545 78 0 0 chr6 43445434 43445741 -138969501 + AluSc SINE Alu 1 307 -2 1769 116 0 26 chr6 43445958 43446225 -138969017 - AluJb SINE Alu -29 283 24 2159 101 0 20 chr6 43446225 43446523 -138968719 + AluSx SINE Alu 1 292 -20 545 217 26 0 chr6 43446571 43446686 -138968556 - MIR SINE MIR -41 221 104 2259 102 0 3 chr6 43448942 43449235 -138966007 - AluSq SINE Alu -21 292 1 1048 119 0 0 chr6 43449371 43449514 -138965728 + AluSg/x SINE Alu 166 308 -2 280 282 0 13 chr6 43450089 43450167 -138965075 - L2 LINE L2 -13 3259 3183 450 268 79 0 chr6 43450169 43450296 -138964946 + MIR SINE MIR 25 161 -101 458 149 140 162 chr6 43450822 43450924 -138964318 + L1ME3 LINE L1 5930 6033 -129 2324 101 0 3 chr6 43450924 43451220 -138964022 - AluSx SINE Alu -17 295 1 458 149 140 162 chr6 43451220 43451331 -138963911 + L1ME3 LINE L1 6033 6140 -22 520 101 13 0 chr6 43451331 43451410 -138963832 - MADE1 DNA Mariner 0 80 1 458 149 140 162 chr6 43451410 43451430 -138963812 + L1ME3 LINE L1 6140 6159 -3 1319 189 60 30 chr6 43451443 43451745 -138963497 + AluJo SINE Alu 1 311 -1 2983 158 105 47 chr6 43451835 43451985 -138963257 - L1MB7 LINE L1 -192 5992 5852 2064 157 0 0 chr6 43451985 43452291 -138962951 - AluJo SINE Alu -4 308 3 2983 158 105 47 chr6 43452291 43452809 -138962433 - L1MB7 LINE L1 -332 5852 5366 1572 238 0 3 chr6 43452809 43453116 -138962126 - AluJb SINE Alu -6 306 1 2983 158 105 47 chr6 43453116 43453161 -138962081 - L1MB7 LINE L1 -818 5366 5325 396 0 0 0 chr6 43453161 43453205 -138962037 + (TG)n Simple_repeat Simple_repeat 2 45 0 2983 158 105 47 chr6 43453205 43453284 -138961958 - L1MB7 LINE L1 -859 5325 5157 400 214 0 58 chr6 43453292 43453395 -138961847 - AluJ/FRAM SINE Alu 0 312 216 290 216 15 34 chr6 43453409 43453504 -138961738 + MLT1J LTR MaLR 410 549 0 2413 106 0 3 chr6 43453995 43454307 -138960935 - AluSx SINE Alu -1 311 1 1693 140 16 82 chr6 43454310 43454625 -138960617 - AluJo SINE Alu -18 294 1 209 308 77 0 chr6 43454731 43454835 -138960407 - L3 LINE CR1 -252 1325 1214 371 365 61 6 chr6 43454852 43455033 -138960209 - MIR SINE MIR -14 248 58 541 231 15 0 chr6 43455314 43455444 -138959798 - L1ME3A LINE L1 0 6170 6039 1250 189 24 0 chr6 43455454 43455660 -138959582 + AluJo SINE Alu 57 267 -45 1149 170 8 33 chr6 43455671 43455912 -138959330 - L1ME3A LINE L1 -126 6044 5810 303 337 62 21 chr6 43455936 43456129 -138959113 + MIR SINE MIR 18 218 -44 476 273 56 31 chr6 43457018 43457179 -138958063 + LTR16C LTR ERVL 1 165 -326 295 196 0 4 chr6 43457279 43457409 -138957833 + LTR16C LTR ERVL 317 491 0 2231 83 21 0 chr6 43457415 43457704 -138957538 - AluY SINE Alu -15 296 2 2493 29 4 0 chr6 43458472 43458777 -138956465 + L1PA4 LINE L1 5860 6165 0 2287 81 3 0 chr6 43458877 43459209 -138956033 + AluSq SINE Alu 1 333 0 668 265 78 62 chr6 43459226 43459562 -138955680 + L1ME LINE L1 5285 5614 -507 2214 119 0 0 chr6 43459562 43459864 -138955378 - AluY SINE Alu -9 302 1 2228 113 0 3 chr6 43459873 43460166 -138955076 - AluSq SINE Alu -21 292 1 668 265 78 62 chr6 43460166 43460256 -138954986 + L1ME LINE L1 5621 5728 -393 2309 80 3 0 chr6 43460256 43460543 -138954699 + AluY SINE Alu 15 302 -9 1316 207 0 20 chr6 43460544 43460790 -138954452 + MSTA LTR MaLR 188 428 0 191 156 0 0 chr6 43460790 43460822 -138954420 + L2 LINE L2 3241 3272 0 213 248 0 124 chr6 43460917 43460947 -138954295 - MIR SINE MIR 0 262 230 2501 84 0 0 chr6 43460947 43461255 -138953987 - AluSx SINE Alu -4 308 1 213 248 0 124 chr6 43461255 43461353 -138953889 - MIR SINE MIR -32 230 150 857 238 59 35 chr6 43461357 43461613 -138953629 - MLT1K LTR MaLR -5 583 322 553 234 0 0 chr6 43461799 43461910 -138953332 - MIR SINE MIR -115 147 37 1209 185 0 289 chr6 43461951 43462053 -138953189 + MLT2B1 LTR ERVL 1 148 -266 1841 175 51 67 chr6 43462053 43462382 -138952860 + MLT1A1 LTR MaLR 1 325 -40 2677 49 0 0 chr6 43462382 43462688 -138952554 - AluY SINE Alu -5 306 1 1841 175 51 67 chr6 43462688 43462729 -138952513 + MLT1A1 LTR MaLR 325 365 0 1209 185 0 289 chr6 43462729 43463036 -138952206 + MLT2B1 LTR ERVL 148 410 -4 199 309 0 0 chr6 43463590 43463645 -138951597 - MIR3 SINE MIR -10 198 144 344 288 283 12 chr6 43465072 43465312 -138949930 - L2 LINE L2 -1 3312 3008 211 290 99 31 chr6 43465903 43466065 -138949177 - L2 LINE L2 -295 2977 2805 246 284 15 0 chr6 43466116 43466183 -138949059 + L2 LINE L2 3243 3310 -3 2244 81 6 41 chr6 43466443 43466763 -138948479 - AluSq SINE Alu -4 309 1 287 266 0 0 chr6 43468535 43468629 -138946613 + C-rich Low_complexity Low_complexity 2 95 0 212 98 0 24 chr6 43468650 43468691 -138946551 + (CCG)n Simple_repeat Simple_repeat 1 40 0 303 296 82 82 chr6 43468762 43469117 -138946125 - L1M2 LINE L1 -5752 1097 743 333 274 126 0 chr6 43470178 43470313 -138944929 - MIR SINE MIR -50 212 61 2059 141 0 3 chr6 43470582 43470886 -138944356 - AluSx SINE Alu -9 303 1 371 333 56 41 chr6 43471390 43471585 -138943657 - L2 LINE L2 -181 3091 2894 320 267 85 51 chr6 43471677 43471853 -138943389 - L2 LINE L2 -469 2845 2664 1936 99 58 27 chr6 43472534 43472827 -138942415 - AluSp SINE Alu -11 302 1 25 0 0 0 chr6 43474266 43474291 -138940951 + AT_rich Low_complexity Low_complexity 1 25 0 1957 152 3 0 chr6 43475223 43475519 -138939723 + AluSx SINE Alu 1 297 -15 774 253 89 0 chr6 43475558 43475748 -138939494 - MER3 DNA MER1_type -2 207 1 202 253 24 48 chr6 43475803 43475886 -138939356 + MIR3 SINE MIR 110 190 -18 2448 66 0 7 chr6 43477398 43477701 -138937541 - AluY SINE Alu -10 301 1 572 192 0 20 chr6 43477898 43477997 -138937245 + 7SLRNA srpRNA srpRNA 218 314 -6 2047 125 4 0 chr6 43478006 43478316 -138936926 + AluSx SINE Alu 2 312 0 211 225 192 42 chr6 43479860 43479980 -138935262 + MIR SINE MIR 111 248 -14 473 278 87 96 chr6 43480172 43480506 -138934736 - L2 LINE L2 -25 3247 2917 590 165 101 0 chr6 43480770 43480879 -138934363 - Charlie4 DNA MER1_type -9 1952 1833 200 246 18 18 chr6 43481388 43481445 -138933797 + CT-rich Low_complexity Low_complexity 3 59 0 1433 162 0 53 chr6 43481445 43481710 -138933532 - AluJo SINE Alu -32 280 30 1569 147 17 0 chr6 43481710 43481941 -138933301 - 7SLRNA srpRNA srpRNA -70 250 16 793 210 50 46 chr6 43481965 43482184 -138933058 - L1ME3A LINE L1 -5 6165 5946 2334 80 7 7 chr6 43482294 43482595 -138932647 + AluSx SINE Alu 1 301 -11 5131 141 30 11 chr6 43482596 43483418 -138931824 - L1MC1 LINE L1 -10 6323 5486 411 296 0 17 chr6 43483431 43483603 -138931639 + (TA)n Simple_repeat Simple_repeat 2 170 0 908 243 63 71 chr6 43483619 43483911 -138931331 - L1ME3A LINE L1 -571 5591 5298 1804 158 10 3 chr6 43483911 43484208 -138931034 - AluJb SINE Alu -13 299 1 908 243 63 71 chr6 43484208 43484267 -138930975 - L1ME3A LINE L1 -864 5298 5240 23 54 0 0 chr6 43484293 43484330 -138930912 + AT_rich Low_complexity Low_complexity 1 37 0 388 257 55 49 chr6 43484488 43484671 -138930571 - L1MC4a LINE L1 -1867 5941 5758 189 195 138 115 chr6 43484924 43485011 -138930231 - MER5B DNA MER1_type -29 149 61 189 273 191 29 chr6 43485071 43485280 -138929962 - L2 LINE L2 -1139 2175 1933 2374 84 3 7 chr6 43486258 43486557 -138928685 - AluSp SINE Alu -15 298 1 4493 168 38 57 chr6 43487054 43487934 -138927308 - L1MB7 LINE L1 -18 6166 5271 2347 90 0 3 chr6 43487934 43488233 -138927009 - AluSx SINE Alu -14 298 1 4493 168 38 57 chr6 43488233 43488255 -138926987 - L1MB7 LINE L1 -913 5271 5250 2381 87 0 0 chr6 43488255 43488564 -138926678 - AluSc SINE Alu 0 309 1 4493 168 38 57 chr6 43488564 43488855 -138926387 - L1MB7 LINE L1 -934 5250 4955 2103 122 0 3 chr6 43488855 43489150 -138926092 - AluSq SINE Alu -19 294 1 4493 168 38 57 chr6 43489150 43489529 -138925713 - L1MB7 LINE L1 -1229 4955 4447 21 0 0 0 chr6 43489664 43489685 -138925557 + AT_rich Low_complexity Low_complexity 1 21 0 324 301 153 6 chr6 43490034 43490197 -138925045 - L1MC4 LINE L1 -30 8012 7826 2157 78 3 3 chr6 43490228 43490534 -138924708 - AluY SINE Alu 0 306 1 1112 207 40 112 chr6 43490536 43490628 -138924614 - L1ME2 LINE L1 -1 6163 6066 1791 199 70 3 chr6 43490628 43490970 -138924272 - MLT1A1 LTR MaLR 0 365 1 1112 207 40 112 chr6 43490970 43491322 -138923920 - L1ME2 LINE L1 -98 6066 5751 2191 121 7 0 chr6 43491593 43491891 -138923351 + AluSx SINE Alu 3 302 -10 2387 77 0 7 chr6 43491955 43492253 -138922989 + AluY SINE Alu 1 296 -15 1597 167 19 47 chr6 43492658 43492975 -138922267 - AluJb SINE Alu -4 308 1 234 92 31 46 chr6 43492994 43493059 -138922183 + CT-rich Low_complexity Low_complexity 3 66 0 2185 81 0 0 chr6 43493059 43493332 -138921910 - AluY SINE Alu -38 273 1 240 239 37 64 chr6 43493426 43493484 -138921758 - MLT1F LTR MaLR -8 534 479 2379 68 0 33 chr6 43493484 43493791 -138921451 + AluY SINE Alu 1 297 -14 240 239 37 64 chr6 43493791 43493841 -138921401 - MLT1F LTR MaLR -63 479 429 * 662 237 16 32 chr6 43493815 43493969 -138921273 - MLT1H1 LTR MaLR -354 195 2 466 193 0 64 chr6 43495088 43495197 -138920045 + FLAM_A SINE Alu 31 132 -10 245 259 0 0 chr6 43495361 43495415 -138919827 - MIR SINE MIR -161 101 48 2352 102 0 0 chr6 43495456 43495761 -138919481 - AluY SINE Alu -5 306 2 21 71 0 0 chr6 43495947 43495989 -138919253 + AT_rich Low_complexity Low_complexity 1 42 0 2165 94 0 0 chr6 43496045 43496320 -138918922 + AluSc SINE Alu 1 275 -34 675 186 0 0 chr6 43496351 43496469 -138918773 - MER105 DNA DNA -40 164 47 834 162 75 17 chr6 43496526 43496733 -138918509 + MER58B DNA MER1_type 70 304 -37 292 185 0 37 chr6 43496754 43496808 -138918434 - MER105 DNA DNA -149 55 4 2400 96 0 3 chr6 43498148 43498461 -138916781 - AluSq SINE Alu -1 312 1 302 260 160 0 chr6 43499084 43499184 -138916058 - L2 LINE L2 -2 3311 3196 1815 158 63 0 chr6 43499216 43499519 -138915723 + MER7A DNA MER2_type 26 345 -1 683 154 9 18 chr6 43499540 43499650 -138915592 - FLAM_A SINE Alu -33 109 1 473 104 0 0 chr6 43499796 43499863 -138915379 - AluSx SINE Alu -9 303 237 983 126 0 80 chr6 43499863 43500038 -138915204 - AluSx SINE Alu -151 161 1 234 268 61 24 chr6 43500858 43500940 -138914302 + MIR3 SINE MIR 76 160 -48 974 152 11 58 chr6 43500941 43501132 -138914110 + MER20 DNA MER1_type 2 183 -36 1196 150 11 0 chr6 43501458 43501645 -138913597 - AluSg/x SINE Alu -3 307 119 210 71 0 0 chr6 43502161 43502189 -138913053 + (A)n Simple_repeat Simple_repeat 1 28 0 2398 84 3 0 chr6 43502704 43503002 -138912240 - AluSp SINE Alu -14 299 1 570 204 15 30 chr6 43503288 43503420 -138911822 - MIR SINE MIR -10 252 123 198 0 0 0 chr6 43503716 43503738 -138911504 + (T)n Simple_repeat Simple_repeat 1 22 0 2087 121 0 23 chr6 43503897 43504202 -138911040 - AluSx SINE Alu -13 299 2 1341 160 124 25 chr6 43504764 43505046 -138910196 - AluSg SINE Alu 0 310 1 28 61 0 0 chr6 43505434 43505483 -138909759 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr6 43505565 43505586 -138909656 + AT_rich Low_complexity Low_complexity 1 21 0 278 211 149 9 chr6 43505587 43505701 -138909541 - MER69 DNA AcHobo -100 2426 2297 1199 161 26 0 chr6 43505702 43505894 -138909348 - AluJb SINE Alu -19 293 97 469 304 190 0 chr6 43507830 43507988 -138907254 + MIR SINE MIR 17 204 -58 334 120 0 0 chr6 43508562 43508612 -138906630 - Alu SINE Alu -6 295 246 2030 97 42 39 chr6 43508614 43508922 -138906320 - AluSq SINE Alu -4 309 1 21 0 0 0 chr6 43509023 43509044 -138906198 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 43509389 43509409 -138905833 + (T)n Simple_repeat Simple_repeat 1 20 0 2045 137 3 0 chr6 43509729 43510028 -138905214 + AluSg SINE Alu 1 300 -10 334 308 70 7 chr6 43510230 43510373 -138904869 - MIR SINE MIR -13 249 98 256 185 13 89 chr6 43510827 43510984 -138904258 + T-rich Low_complexity Low_complexity 5 149 0 1408 164 17 74 chr6 43511156 43511484 -138903758 + AluJo SINE Alu 1 311 0 283 48 0 24 chr6 43512140 43512182 -138903060 + MADE1 DNA Mariner 39 79 -1 186 100 0 0 chr6 43512594 43512624 -138902618 + L2 LINE L2 3199 3228 -85 299 200 0 24 chr6 43513400 43513485 -138901757 + (TATG)n Simple_repeat Simple_repeat 1 83 0 384 77 0 0 chr6 43513490 43513542 -138901700 + (CA)n Simple_repeat Simple_repeat 2 53 0 1858 165 29 32 chr6 43513558 43513649 -138901593 + MER2 DNA MER2_type 7 97 -248 2128 123 7 0 chr6 43513649 43513950 -138901292 + AluSx SINE Alu 1 303 -9 1858 165 29 32 chr6 43513950 43514198 -138901044 + MER2 DNA MER2_type 97 345 0 435 181 95 60 chr6 43514757 43514873 -138900369 - FLAM_C SINE Alu -23 120 1 547 207 23 11 chr6 43516798 43516972 -138898270 - L1M4 LINE L1 -2106 4276 4101 1678 243 135 30 chr6 43517444 43517905 -138897337 - L1M4 LINE L1 -2319 4063 3652 2222 89 20 10 chr6 43517905 43518209 -138897033 - AluSx SINE Alu -5 307 1 1678 243 135 30 chr6 43518209 43518265 -138896977 - L1M4 LINE L1 -2730 3652 3603 1635 159 27 30 chr6 43518265 43518561 -138896681 - AluJo SINE Alu -15 297 3 1678 243 135 30 chr6 43518561 43518911 -138896331 - L1M4 LINE L1 -2779 3603 3104 1021 131 100 0 chr6 43518911 43519071 -138896171 + AluJb SINE Alu 134 309 -3 2306 95 10 0 chr6 43519074 43519370 -138895872 + AluSx SINE Alu 4 302 -10 911 172 28 0 chr6 43519452 43519597 -138895645 - FRAM SINE Alu -29 147 1 736 235 141 22 chr6 43519626 43520168 -138895074 - L1ME LINE L1 -4881 1503 909 * 1107 236 4 8 chr6 43520167 43520408 -138894834 + L1MC4a LINE L1 7501 7740 -68 1876 256 42 38 chr6 43520417 43521133 -138894109 - L1ME LINE L1 -5326 1046 328 1447 192 58 46 chr6 43521233 43521628 -138893614 - L1ME3A LINE L1 -116 6054 5655 2263 71 3 42 chr6 43521728 43522039 -138893203 + AluY SINE Alu 1 299 -12 915 165 136 49 chr6 43522479 43522722 -138892520 - MER58B DNA MER1_type -4 337 74 1747 139 4 157 chr6 43522722 43522985 -138892257 - MLT1B LTR MaLR 0 390 225 2427 76 7 0 chr6 43522985 43523289 -138891953 + AluSp SINE Alu 1 306 -7 1747 139 4 157 chr6 43523289 43523485 -138891757 - MLT1B LTR MaLR -165 225 1 830 129 8 8 chr6 43523502 43523626 -138891616 - FLAM_C SINE Alu -19 124 1 228 293 37 24 chr6 43523629 43523711 -138891531 - MER58B DNA MER1_type -258 83 1 24 0 0 0 chr6 43523936 43523960 -138891282 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 43524384 43524406 -138890836 + AT_rich Low_complexity Low_complexity 1 22 0 1538 161 4 49 chr6 43524435 43524702 -138890540 - AluJb SINE Alu -37 275 21 225 0 0 0 chr6 43526104 43526129 -138889113 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 572 239 98 29 chr6 43526171 43526376 -138888866 - L2 LINE L2 -696 2618 2400 230 262 16 0 chr6 43526435 43526496 -138888746 - MIR SINE MIR -189 73 12 640 282 112 17 chr6 43526535 43526822 -138888420 - L2 LINE L2 -458 2856 2543 180 97 0 0 chr6 43528070 43528101 -138887141 + (T)n Simple_repeat Simple_repeat 1 31 0 263 226 20 78 chr6 43529134 43529236 -138886006 + L3b LINE CR1 1375 1470 -113 1845 19 0 0 chr6 43529559 43529775 -138885467 + L1HS LINE L1 5939 6154 -1 1992 135 0 43 chr6 43529811 43530137 -138885105 - AluSx SINE Alu 0 312 1 1674 185 0 23 chr6 43531690 43531993 -138883249 + AluJo SINE Alu 3 298 -14 2438 91 0 0 chr6 43532282 43532591 -138882651 - AluSg1 SINE Alu 0 309 1 2360 97 3 3 chr6 43532963 43533274 -138881968 + AluSp SINE Alu 1 311 -2 263 260 119 72 chr6 43533783 43534018 -138881224 - MARNA DNA Mariner -123 463 218 2211 120 0 0 chr6 43534113 43534413 -138880829 + AluSx SINE Alu 1 300 -12 519 76 0 0 chr6 43534580 43534646 -138880596 - AluJ/FLAM SINE Alu -233 79 14 2409 99 0 0 chr6 43534707 43535019 -138880223 + AluSx SINE Alu 1 312 0 344 224 13 13 chr6 43535119 43535195 -138880047 + MIR3 SINE MIR 85 160 -48 1761 169 0 33 chr6 43535466 43535773 -138879469 + AluSx SINE Alu 3 299 -13 23 54 0 0 chr6 43536148 43536185 -138879057 + AT_rich Low_complexity Low_complexity 1 37 0 273 167 0 0 chr6 43537513 43537561 -138877681 - MLT1L LTR MaLR -17 598 551 560 228 8 16 chr6 43537654 43537777 -138877465 - MER5C DNA MER1_type -200 124 3 300 133 100 0 chr6 43537794 43537854 -138877388 - MLT1L LTR MaLR -74 541 476 562 247 107 120 chr6 43537880 43538273 -138876969 - MLT1L LTR MaLR -227 388 1 313 318 83 12 chr6 43539133 43539318 -138875924 + MIR3 SINE MIR 11 206 -56 287 269 62 31 chr6 43539649 43539779 -138875463 + L1M4 LINE L1 15 148 -6394 * 1236 209 37 31 chr6 43539772 43540097 -138875145 - L1MB7 LINE L1 -128 6056 5730 292 149 203 0 chr6 43540099 43540173 -138875069 + L1M4 LINE L1 2965 3053 -3591 1035 89 25 51 chr6 43540174 43540332 -138874910 + AluSg/x SINE Alu 106 259 -51 248 0 31 0 chr6 43540332 43540364 -138874878 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1269 224 58 30 chr6 43540365 43540480 -138874762 + L1M4 LINE L1 3068 3178 -3466 1978 130 7 7 chr6 43540480 43540780 -138874462 - AluSx SINE Alu -12 300 1 1269 224 58 30 chr6 43540780 43541061 -138874181 + L1M4 LINE L1 3178 3475 -3169 665 146 0 36 chr6 43541062 43541172 -138874070 + FLAM_A SINE Alu 1 106 -36 2804 257 78 6 chr6 43541192 43541794 -138873448 + L1M4 LINE L1 3461 4161 -2483 207 100 0 0 chr6 43541794 43541824 -138873418 + (CA)n Simple_repeat Simple_repeat 2 31 0 2804 257 78 6 chr6 43541824 43542199 -138873043 + L1M4 LINE L1 4161 4508 -2136 2631 220 73 126 chr6 43542191 43542299 -138872943 - L1MEc LINE L1 -4289 2107 1995 * 2222 89 0 0 chr6 43542299 43542605 -138872637 - AluSx SINE Alu 0 306 1 2631 220 73 126 chr6 43542605 43542724 -138872518 - L1MEc LINE L1 -4401 1995 1871 1813 143 24 3 chr6 43542724 43543011 -138872231 + AluJb SINE Alu 1 293 -19 2631 220 73 126 chr6 43543011 43543139 -138872103 - L1MEc LINE L1 -4525 1871 1738 1398 169 70 39 chr6 43543139 43543423 -138871819 - AluJo SINE Alu -19 293 1 2631 220 73 126 chr6 43543423 43544081 -138871161 - L1MEc LINE L1 -4658 1738 1084 904 97 0 0 chr6 43544081 43544205 -138871037 - AluSp/q SINE Alu -8 305 182 2631 220 73 126 chr6 43544205 43544776 -138870466 - L1MEc LINE L1 -5312 1084 485 605 261 94 53 chr6 43545010 43545250 -138869992 - L1M4 LINE L1 -2198 3948 3719 841 90 15 8 chr6 43545250 43545383 -138869859 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 195 69 0 0 chr6 43545382 43545411 -138869831 + (CCTG)n Simple_repeat Simple_repeat 2 30 0 * 605 261 94 53 chr6 43545383 43545418 -138869824 - L1M4 LINE L1 -2427 3719 3687 264 30 0 0 chr6 43545418 43545451 -138869791 + (TG)n Simple_repeat Simple_repeat 2 34 0 605 261 94 53 chr6 43545451 43545712 -138869530 - L1M4 LINE L1 -2459 3687 3418 22 0 0 0 chr6 43545726 43545748 -138869494 + AT_rich Low_complexity Low_complexity 1 22 0 1856 277 87 27 chr6 43545772 43546577 -138868665 - L1ME3 LINE L1 0 6162 5310 2281 249 114 53 chr6 43546707 43547646 -138867596 - L1ME3 LINE L1 -905 5241 4218 2290 79 0 16 chr6 43547646 43547951 -138867291 - AluY SINE Alu -11 300 1 2281 249 114 53 chr6 43547951 43548159 -138867083 - L1ME3 LINE L1 -1928 4218 4024 307 276 147 0 chr6 43548770 43548886 -138866356 - L1MC/D LINE L1 -1952 5856 5724 304 262 61 112 chr6 43549394 43549608 -138865634 - L2 LINE L2 0 3313 3111 1491 142 109 22 chr6 43550111 43550385 -138864857 + AluJb SINE Alu 1 298 -14 1343 156 6 132 chr6 43550918 43551245 -138863997 + AluJb SINE Alu 1 286 -26 739 187 0 29 chr6 43551489 43551628 -138863614 - FLAM_A SINE Alu -2 140 6 341 194 14 28 chr6 43553522 43553594 -138861648 + L2 LINE L2 3186 3256 -16 278 244 53 42 chr6 43553980 43554106 -138861136 - MER5A DNA MER1_type -6 172 40 208 277 62 0 chr6 43554387 43554452 -138860790 - MIR3 SINE MIR -11 197 129 355 273 102 48 chr6 43554476 43554663 -138860579 + MIR SINE MIR 63 259 -3 3658 175 66 26 chr6 43554824 43555642 -138859600 - L1MB5 LINE L1 -36 6138 5288 1808 209 57 19 chr6 43555982 43556460 -138858782 - L1ME1 LINE L1 -5 6161 5666 799 289 122 30 chr6 43556471 43557038 -138858204 - L1MC4 LINE L1 0 8042 7424 506 18 0 0 chr6 43557176 43557233 -138858009 - L1HS LINE L1 -71 6084 6028 448 17 0 0 chr6 43557233 43557292 -138857950 + L1PA2 LINE L1 6096 6154 -1 835 200 82 0 chr6 43557316 43557486 -138857756 + MER21B LTR ERV1 311 494 -369 313 272 93 19 chr6 43557515 43557677 -138857565 - L1MC4 LINE L1 -665 7377 7204 2222 115 0 3 chr6 43558020 43558332 -138856910 - AluSx SINE Alu -1 311 1 536 291 40 7 chr6 43558869 43559020 -138856222 + MIR SINE MIR 1 156 -106 24 0 0 0 chr6 43559197 43559221 -138856021 + AT_rich Low_complexity Low_complexity 1 24 0 4794 133 81 20 chr6 43559224 43560292 -138854950 - L1MA8 LINE L1 -4 6287 5159 378 0 0 0 chr6 43560782 43560824 -138854418 + (TG)n Simple_repeat Simple_repeat 1 42 0 245 375 62 19 chr6 43560992 43561152 -138854090 + L3 LINE CR1 622 788 -789 263 54 0 0 chr6 43561322 43561359 -138853883 + HY5 scRNA scRNA 1 37 -47 6499 126 76 16 chr6 43561602 43562457 -138852785 - Tigger1 DNA MER2_type 0 2418 1471 2226 103 0 44 chr6 43562457 43562776 -138852466 - AluSq SINE Alu -8 305 1 6499 126 76 16 chr6 43562776 43563099 -138852143 - Tigger1 DNA MER2_type -947 1471 1169 1682 152 30 0 chr6 43563100 43563369 -138851873 - AluSx SINE Alu -14 298 22 213 39 0 0 chr6 43563394 43563420 -138851822 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 992 98 0 0 chr6 43563420 43563552 -138851690 - AluY SINE Alu -179 132 1 4568 142 90 1 chr6 43563562 43564385 -138850857 - Tigger1 DNA MER2_type -1243 1175 280 779 100 0 9 chr6 43564386 43564496 -138850746 + U1 snRNA snRNA 56 164 -1 2297 106 3 0 chr6 43564517 43564820 -138850422 - AluSq SINE Alu -9 304 1 1323 192 54 0 chr6 43564853 43565129 -138850113 - Tigger1 DNA MER2_type -2125 293 3 2205 108 0 7 chr6 43565129 43565424 -138849818 + AluSc SINE Alu 1 293 -16 2547 173 64 32 chr6 43565447 43565980 -138849262 + MER44D DNA MER2_type 1 605 0 2389 93 3 0 chr6 43566816 43567126 -138848116 - AluY SINE Alu 0 311 1 2355 71 14 0 chr6 43567703 43567999 -138847243 - AluSg SINE Alu -10 300 1 189 0 0 0 chr6 43568804 43568825 -138846417 + (T)n Simple_repeat Simple_repeat 1 21 0 221 329 12 0 chr6 43569808 43569890 -138845352 + CT-rich Low_complexity Low_complexity 3 85 0 1574 176 0 60 chr6 43570515 43570854 -138844388 + AluJb SINE Alu 1 321 0 502 259 89 41 chr6 43570886 43571202 -138844040 + L1ME4a LINE L1 5554 5884 -237 5203 125 68 124 chr6 43571266 43572568 -138842674 - Tigger3b DNA MER2_type -1 1230 2 21 0 0 0 chr6 43573064 43573085 -138842157 + AT_rich Low_complexity Low_complexity 1 21 0 1658 301 116 51 chr6 43573110 43573315 -138841927 - L2 LINE L2 0 3313 3123 1554 173 72 0 chr6 43573315 43573592 -138841650 + AluJo SINE Alu 12 308 -4 1658 301 116 51 chr6 43573592 43574173 -138841069 - L2 LINE L2 -190 3123 2581 2361 70 3 3 chr6 43574173 43574471 -138840771 + AluSq SINE Alu 2 299 -14 1658 301 116 51 chr6 43574471 43574972 -138840270 - L2 LINE L2 -732 2581 1923 1067 209 152 57 chr6 43574972 43575432 -138839810 - MLT1D LTR MaLR 0 505 2 1658 301 116 51 chr6 43575432 43575489 -138839753 - L2 LINE L2 -1390 1923 1871 382 279 93 66 chr6 43576588 43576771 -138838471 + MIR SINE MIR 3 190 -72 1777 147 21 11 chr6 43577283 43577569 -138837673 - AluSx SINE Alu -23 289 1 718 70 113 0 chr6 43577822 43577937 -138837305 - MER85 DNA T2_type -11 128 1 29 28 0 0 chr6 43578503 43578539 -138836703 + AT_rich Low_complexity Low_complexity 1 36 0 229 216 0 0 chr6 43578769 43578820 -138836422 + T-rich Low_complexity Low_complexity 1 51 0 907 108 0 0 chr6 43579174 43579294 -138835948 + FLAM_C SINE Alu 11 130 -13 371 240 21 21 chr6 43579321 43579417 -138835825 + MIR3 SINE MIR 89 184 -24 2124 187 92 39 chr6 43579577 43580143 -138835099 - MER67B LTR ERV1 0 661 66 1356 97 6 0 chr6 43580143 43580318 -138834924 + AluSc SINE Alu 128 303 -6 392 191 1 0 chr6 43580409 43580495 -138834747 - MER67A LTR ERV1 -385 81 3 2280 84 24 0 chr6 43580740 43581038 -138834204 + AluSc SINE Alu 1 305 -4 455 125 38 0 chr6 43581200 43581280 -138833962 + Tigger4(Zombi) DNA MER2_type 2649 2731 0 219 36 0 0 chr6 43582504 43582532 -138832710 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 301 253 63 89 chr6 43583157 43583347 -138831895 - MLT1I LTR MaLR -27 382 198 2167 121 0 10 chr6 43583398 43583711 -138831531 + AluSg SINE Alu 1 310 0 243 209 12 12 chr6 43583725 43583811 -138831431 + L1M4 LINE L1 3073 3158 -2988 1189 148 0 0 chr6 43583842 43584025 -138831217 + AluSg/x SINE Alu 130 312 0 350 183 14 0 chr6 43584026 43584097 -138831145 + L1M4 LINE L1 3154 3225 -2921 2312 59 0 3 chr6 43584101 43584391 -138830851 + AluY SINE Alu 1 289 -22 1856 160 12 6 chr6 43634920 43635252 -138779990 + L1MC3 LINE L1 7443 7776 -9 2094 126 3 16 chr6 43635610 43635919 -138779323 - THE1B LTR MaLR -2 362 58 2027 143 0 7 chr6 43636020 43636321 -138778921 + AluSx SINE Alu 6 304 -8 1625 151 74 34 chr6 43636330 43636655 -138778587 - THE1C LTR MaLR -37 338 1 304 222 0 0 chr6 43636661 43636724 -138778518 - L1M4 LINE L1 -1922 4224 4162 767 177 70 12 chr6 43636725 43636964 -138778278 - MER7A DNA MER2_type -2 344 1 917 216 7 81 chr6 43636964 43637008 -138778234 - L1M4 LINE L1 -1982 4164 4118 2089 104 0 17 chr6 43637008 43637322 -138777920 - AluSx SINE Alu 0 309 1 917 216 7 81 chr6 43637322 43637549 -138777693 - L1M4 LINE L1 -2028 4118 3912 2212 92 0 0 chr6 43637661 43637943 -138777299 + AluSc SINE Alu 28 309 0 283 296 0 83 chr6 43638529 43638661 -138776581 - MER94 DNA DNA -12 122 2 821 129 0 7 chr6 43638806 43638946 -138776296 + (TTCC)n Simple_repeat Simple_repeat 4 142 0 1334 129 0 15 chr6 43638946 43639147 -138776095 - AluSg/x SINE Alu -39 273 76 1561 243 78 16 chr6 43639162 43639710 -138775532 - L1M4 LINE L1 -2218 3928 3347 1205 92 0 0 chr6 43639717 43639870 -138775372 - AluSq SINE Alu -78 235 83 679 234 124 4 chr6 43639876 43640150 -138775092 - L1M4 LINE L1 -2806 3340 3034 2329 99 0 0 chr6 43641015 43641318 -138773924 - AluSx SINE Alu -9 303 1 21 0 0 0 chr6 43641396 43641417 -138773825 + AT_rich Low_complexity Low_complexity 1 21 0 1698 156 49 3 chr6 43643531 43643839 -138771403 - MER67B LTR ERV1 -274 387 66 1342 97 6 0 chr6 43643839 43644014 -138771228 + AluSc SINE Alu 128 303 -6 417 191 1 0 chr6 43644105 43644191 -138771051 - MER67A LTR ERV1 -385 81 3 2262 84 24 0 chr6 43644436 43644733 -138770509 + AluSc SINE Alu 1 304 -5 481 125 38 0 chr6 43644895 43644975 -138770267 + Tigger4(Zombi) DNA MER2_type 2649 2731 0 1411 205 56 43 chr6 43646207 43646583 -138768659 - L1ME LINE L1 -413 5753 5372 2295 97 0 0 chr6 43647384 43647683 -138767559 - AluSg SINE Alu -11 299 1 248 196 93 21 chr6 43647955 43648052 -138767190 + L1ME4a LINE L1 5978 6081 -40 331 50 0 0 chr6 43648669 43648709 -138766533 + THE1C LTR MaLR 1 40 -335 192 77 0 0 chr6 43649181 43649207 -138766035 + (T)n Simple_repeat Simple_repeat 1 26 0 1696 169 48 0 chr6 43649302 43649597 -138765645 + AluJb SINE Alu 1 309 -3 22 35 0 0 chr6 43650295 43650324 -138764918 + AT_rich Low_complexity Low_complexity 1 29 0 1877 146 0 26 chr6 43650408 43650710 -138764532 - AluJb SINE Alu -18 294 1 188 65 0 32 chr6 43651304 43651335 -138763907 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 295 209 114 19 chr6 43651536 43651641 -138763601 - MIR SINE MIR -108 154 40 278 258 99 28 chr6 43651943 43652156 -138763086 - L1ME LINE L1 -259 5862 5635 343 230 81 11 chr6 43652833 43652920 -138762322 + L2 LINE L2 3168 3260 -12 7610 166 69 18 chr6 43653126 43654696 -138760546 + L1MC3 LINE L1 5658 7308 -477 1809 226 45 137 chr6 43654796 43655420 -138759822 - L1MEc LINE L1 -4716 1680 1106 904 97 0 0 chr6 43655420 43655544 -138759698 - AluSp/q SINE Alu -8 305 182 1809 226 45 137 chr6 43655544 43656114 -138759128 - L1MEc LINE L1 -5290 1106 485 627 266 111 50 chr6 43656348 43656588 -138758654 - L1M4 LINE L1 -2198 3948 3724 985 81 13 7 chr6 43656588 43656737 -138758505 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 195 69 0 0 chr6 43656736 43656765 -138758477 + (CCTG)n Simple_repeat Simple_repeat 2 30 0 * 627 266 111 50 chr6 43656737 43656772 -138758470 - L1M4 LINE L1 -2422 3724 3693 264 30 0 0 chr6 43656772 43656805 -138758437 + (TG)n Simple_repeat Simple_repeat 2 34 0 627 266 111 50 chr6 43656805 43657132 -138758110 - L1M4 LINE L1 -2453 3693 3338 * 1771 277 89 29 chr6 43657126 43657909 -138757333 - L1ME3 LINE L1 0 6162 5333 348 216 78 47 chr6 43660418 43660650 -138754592 + L1ME LINE L1 5258 5552 -569 * 633 275 32 16 chr6 43660647 43660894 -138754348 - L1MEc LINE L1 -4461 1935 1685 214 140 20 20 chr6 43660944 43660994 -138754248 + T-rich Low_complexity Low_complexity 3 52 0 847 161 0 0 chr6 43660998 43661135 -138754107 - FLAM_C SINE Alu -6 137 1 401 339 23 8 chr6 43661331 43661591 -138753651 + L1MEc LINE L1 1456 1719 -4677 592 275 56 30 chr6 43662349 43662566 -138752676 + MIR SINE MIR 12 233 -29 1678 155 14 11 chr6 43662665 43662942 -138752300 - AluJo SINE Alu -34 278 1 883 106 8 23 chr6 43663817 43663949 -138751293 + AluSg/x SINE Alu 163 292 -18 182 393 0 0 chr6 43664025 43664086 -138751156 + L2 LINE L2 3232 3292 -21 22 35 0 0 chr6 43664761 43664790 -138750452 + AT_rich Low_complexity Low_complexity 1 29 0 188 328 0 15 chr6 43665211 43665278 -138749964 - MER5B DNA MER1_type -80 98 33 381 271 154 66 chr6 43666531 43666804 -138748438 - MER102b DNA MER1_type -7 334 38 1424 158 27 72 chr6 43667171 43667321 -138747921 - AluJb SINE Alu -20 292 160 270 73 0 0 chr6 43667321 43667362 -138747880 + (TG)n Simple_repeat Simple_repeat 1 41 0 1424 158 27 72 chr6 43667362 43667503 -138747739 - AluJb SINE Alu -152 160 14 627 205 74 0 chr6 43667563 43667685 -138747557 - FLAM_A SINE Alu -2 131 1 194 327 0 0 chr6 43668616 43668668 -138746574 + L3 LINE CR1 1523 1574 -3 22 0 0 0 chr6 43670104 43670126 -138745116 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 43670339 43670363 -138744879 + AT_rich Low_complexity Low_complexity 1 24 0 338 130 0 37 chr6 43670918 43670972 -138744270 + Alu SINE Alu 1 52 -250 1686 148 57 11 chr6 43670976 43671240 -138744002 + AluJo SINE Alu 18 293 -19 480 212 247 7 chr6 43671620 43671766 -138743476 + MER5A DNA MER1_type 9 189 0 291 362 8 0 chr6 43672281 43672408 -138742834 + CT-rich Low_complexity Low_complexity 5 132 0 2025 176 148 11 chr6 43673658 43674091 -138741151 - MER6A DNA MER2_type -106 499 8 1237 126 0 6 chr6 43674394 43674568 -138740674 - AluSq SINE Alu -140 173 1 301 312 26 0 chr6 43674572 43674649 -138740593 - L2 LINE L2 -25 3288 3210 1403 193 36 36 chr6 43674649 43674986 -138740256 - MLT1A1 LTR MaLR -28 337 1 482 203 23 30 chr6 43674992 43675125 -138740117 - L2 LINE L2 -313 3000 2869 728 206 48 48 chr6 43675411 43675600 -138739642 - MER5A DNA MER1_type 0 189 1 318 310 82 69 chr6 43675600 43675845 -138739397 + MIR SINE MIR 9 256 -6 838 197 150 18 chr6 43675892 43676166 -138739076 - MER33 DNA MER1_type 0 324 15 233 141 31 47 chr6 43676653 43676717 -138738525 + T-rich Low_complexity Low_complexity 3 65 0 1897 134 0 0 chr6 43676719 43676987 -138738255 - AluSx SINE Alu -18 294 27 817 301 74 47 chr6 43677750 43678470 -138736772 - L1MC4 LINE L1 -2 8040 7302 2139 117 0 0 chr6 43678669 43678987 -138736255 - AluSx SINE Alu 0 318 1 219 36 0 0 chr6 43679470 43679498 -138735744 + (TG)n Simple_repeat Simple_repeat 2 29 0 184 301 12 48 chr6 43680940 43681023 -138734219 - L2 LINE L2 -8 3305 3226 21 36 0 0 chr6 43681154 43681182 -138734060 + AT_rich Low_complexity Low_complexity 1 28 0 2385 77 0 7 chr6 43681205 43681503 -138733739 + AluSq SINE Alu 1 296 -17 283 250 0 0 chr6 43682142 43682206 -138733036 + Charlie7 DNA MER1_type 38 101 -2511 1377 226 84 36 chr6 43682235 43682661 -138732581 - MLT1C LTR MaLR 0 467 18 2176 107 0 0 chr6 43682883 43683163 -138732079 + AluSg SINE Alu 1 280 -30 1032 166 30 0 chr6 43683676 43683845 -138731397 - MSTB LTR MaLR -48 378 205 340 288 137 0 chr6 43684173 43684319 -138730923 - MIR SINE MIR -58 204 39 35 0 0 0 chr6 43687285 43687320 -138727922 + AT_rich Low_complexity Low_complexity 1 35 0 3036 135 49 2 chr6 43687852 43688341 -138726901 - MER41E LTR ERV1 0 512 1 1695 152 78 0 chr6 43688526 43688795 -138726447 - AluSx SINE Alu -22 290 1 331 313 92 26 chr6 43689207 43689402 -138725840 + L1ME4a LINE L1 5691 5898 -223 326 356 110 40 chr6 43690568 43690783 -138724459 - MIR SINE MIR -31 231 2 294 238 50 12 chr6 43690845 43690925 -138724317 + MIR3 SINE MIR 126 208 0 275 284 0 0 chr6 43691569 43691643 -138723599 - MIR SINE MIR -17 245 172 47 44 0 0 chr6 43692596 43692664 -138722578 + AT_rich Low_complexity Low_complexity 1 68 0 1906 139 0 48 chr6 43692733 43693049 -138722193 - AluJo SINE Alu -11 301 1 437 325 57 81 chr6 43693301 43693438 -138721804 + L2 LINE L2 2468 2607 -665 1709 157 7 52 chr6 43693438 43693743 -138721499 - AluSx SINE Alu -19 293 3 437 325 57 81 chr6 43693743 43694084 -138721158 + L2 LINE L2 2607 2925 -347 1943 113 45 39 chr6 43694084 43694393 -138720849 - AluSx SINE Alu 0 312 2 437 325 57 81 chr6 43694393 43694526 -138720716 + L2 LINE L2 2925 3060 -212 270 219 82 0 chr6 43694564 43694637 -138720605 + L2 LINE L2 3227 3305 -8 670 218 0 48 chr6 43696372 43696406 -138718836 + FLAM_A SINE Alu 1 35 -276 2583 86 36 0 chr6 43696406 43696767 -138718475 - THE1C LTR MaLR -1 374 1 670 218 0 48 chr6 43696767 43696879 -138718363 + FLAM_A SINE Alu 35 140 -171 2111 140 0 0 chr6 43696893 43697200 -138718042 + AluSx SINE Alu 1 307 -5 239 48 0 48 chr6 43697233 43697275 -138717967 + (TGGGGG)n Simple_repeat Simple_repeat 3 42 0 1005 254 35 0 chr6 43697629 43697861 -138717381 + MIR SINE MIR 23 262 0 422 253 148 12 chr6 43698309 43698471 -138716771 + MIR SINE MIR 1 184 -78 342 0 0 0 chr6 43698511 43698549 -138716693 + (T)n Simple_repeat Simple_repeat 1 38 0 198 0 0 0 chr6 43700526 43700548 -138714694 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 1229 243 46 3 chr6 43701428 43701712 -138713530 + L1M4b LINE L1 11 306 -6553 1366 193 94 30 chr6 43701933 43702338 -138712904 + L1M4b LINE L1 1205 1635 -5224 21 0 0 0 chr6 43702399 43702420 -138712822 + AT_rich Low_complexity Low_complexity 1 21 0 690 174 0 9 chr6 43702436 43702551 -138712691 - FLAM_C SINE Alu -19 124 11 1369 200 147 59 chr6 43705443 43706208 -138709034 - L1MC4a LINE L1 -134 7674 6914 558 43 0 0 chr6 43706210 43706279 -138708963 + (TTC)n Simple_repeat Simple_repeat 3 71 0 1349 161 49 63 chr6 43706283 43706569 -138708673 - AluSx SINE Alu -30 282 1 2206 118 3 0 chr6 43706750 43707047 -138708195 - AluSq SINE Alu -13 300 3 465 219 12 94 chr6 43707452 43707612 -138707630 + MER112 DNA MER1_type 13 159 -101 208 171 24 0 chr6 43707614 43707655 -138707587 + (TCTTG)n Simple_repeat Simple_repeat 2 43 0 421 242 17 11 chr6 43707810 43707988 -138707254 + CT-rich Low_complexity Low_complexity 2 180 0 319 269 0 26 chr6 43707990 43708068 -138707174 + C-rich Low_complexity Low_complexity 6 81 0 1244 212 14 28 chr6 43708069 43708237 -138707005 - AluJb SINE Alu -33 279 115 243 0 0 0 chr6 43708237 43708264 -138706978 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1244 212 14 28 chr6 43708264 43708378 -138706864 - AluJb SINE Alu -197 115 1 1956 137 0 7 chr6 43709490 43709828 -138705414 - AluSx SINE Alu 0 336 1 21 0 0 0 chr6 43711040 43711061 -138704181 + AT_rich Low_complexity Low_complexity 1 21 0 2206 101 27 0 chr6 43711480 43711777 -138703465 + AluSx SINE Alu 1 305 -7 902 291 42 18 chr6 43712019 43712356 -138702886 + MLT1I LTR MaLR 63 407 -2 24 32 0 0 chr6 43712478 43712509 -138702733 + AT_rich Low_complexity Low_complexity 1 31 0 786 194 84 0 chr6 43712530 43712685 -138702557 + MER21B LTR ERV1 327 494 -369 309 272 93 19 chr6 43712713 43712875 -138702367 - L1MC4 LINE L1 -665 7377 7204 2257 112 0 3 chr6 43713218 43713530 -138701712 - AluSx SINE Alu -1 311 1 531 291 40 7 chr6 43714065 43714216 -138701026 + MIR SINE MIR 1 156 -106 24 0 0 0 chr6 43714393 43714417 -138700825 + AT_rich Low_complexity Low_complexity 1 24 0 5102 133 81 20 chr6 43714420 43715488 -138699754 - L1MA8 LINE L1 -4 6287 5159 432 0 0 0 chr6 43715978 43716026 -138699216 + (TG)n Simple_repeat Simple_repeat 1 48 0 244 375 62 19 chr6 43716194 43716354 -138698888 + L3 LINE CR1 622 788 -789 276 54 0 0 chr6 43716524 43716561 -138698681 + HY5 scRNA scRNA 1 37 -47 6883 131 73 13 chr6 43716804 43717659 -138697583 - Tigger1 DNA MER2_type 0 2418 1471 2214 103 0 44 chr6 43717659 43717979 -138697263 - AluSq SINE Alu -7 306 1 6883 131 73 13 chr6 43717979 43718302 -138696940 - Tigger1 DNA MER2_type -947 1471 1169 1667 152 30 0 chr6 43718303 43718572 -138696670 - AluSx SINE Alu -14 298 22 246 128 0 0 chr6 43718597 43718636 -138696606 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1002 91 0 0 chr6 43718636 43718768 -138696474 - AluY SINE Alu -179 132 1 4839 142 90 1 chr6 43718778 43719601 -138695641 - Tigger1 DNA MER2_type -1243 1175 280 822 100 0 9 chr6 43719602 43719712 -138695530 + U1 snRNA snRNA 56 164 -1 2282 106 3 0 chr6 43719733 43720036 -138695206 - AluSq SINE Alu -9 304 1 21 36 0 0 chr6 43720042 43720070 -138695172 + AT_rich Low_complexity Low_complexity 1 28 0 418 241 32 102 chr6 43720337 43720524 -138694718 + MER5B DNA MER1_type 4 177 -1 451 183 64 94 chr6 43720674 43720876 -138694366 + L1MC4 LINE L1 7841 8036 -6 2247 101 0 0 chr6 43720963 43721280 -138693962 - AluSq SINE Alu 0 317 1 21 0 0 0 chr6 43721291 43721312 -138693930 + AT_rich Low_complexity Low_complexity 1 21 0 876 276 129 9 chr6 43721863 43722319 -138692923 + L1ME2 LINE L1 5369 5879 -285 332 304 184 25 chr6 43722756 43722914 -138692328 + MIR SINE MIR 11 193 -69 1276 253 109 38 chr6 43725206 43725624 -138689618 - L1MC4a LINE L1 -743 5403 5411 2130 112 7 0 chr6 43725624 43725911 -138689331 - AluSg1 SINE Alu -20 289 1 1276 253 109 38 chr6 43725911 43726251 -138688991 - L1MC4a LINE L1 -734 5412 5098 2056 124 7 7 chr6 43726374 43726673 -138688569 - AluSx SINE Alu -13 299 1 436 297 97 0 chr6 43726737 43726902 -138688340 + MIR SINE MIR 24 204 -58 22 0 0 0 chr6 43726998 43727020 -138688222 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 43727240 43727261 -138687981 + AT_rich Low_complexity Low_complexity 1 21 0 465 242 137 0 chr6 43728753 43728877 -138686365 + MER5A DNA MER1_type 43 183 -6 352 268 149 12 chr6 43729151 43729319 -138685923 - MIR SINE MIR 0 262 72 695 144 40 0 chr6 43730175 43730300 -138684942 + L1MA8 LINE L1 6156 6285 -6 928 196 0 0 chr6 43730628 43730791 -138684451 + FAM SINE Alu 1 163 -12 2552 161 27 40 chr6 43730883 43730946 -138684296 + L1MB5 LINE L1 5621 5683 -491 2224 84 10 7 chr6 43730946 43731243 -138683999 + AluY SINE Alu 1 298 -13 2552 161 27 40 chr6 43731243 43731726 -138683516 + L1MB5 LINE L1 5683 6160 -14 1840 146 21 79 chr6 43732414 43732832 -138682410 + L1MB8 LINE L1 5785 6178 0 2060 128 3 7 chr6 43733177 43733482 -138681760 - AluSx SINE Alu -8 304 1 234 0 0 0 chr6 43733539 43733565 -138681677 + (GA)n Simple_repeat Simple_repeat 2 27 0 1767 129 19 77 chr6 43734824 43735187 -138680055 + L1MB3 LINE L1 5838 6179 -4 27 29 0 0 chr6 43735449 43735483 -138679759 + AT_rich Low_complexity Low_complexity 1 34 0 242 243 81 14 chr6 43735497 43735571 -138679671 + MIR3 SINE MIR 87 157 -51 601 251 159 35 chr6 43735617 43736020 -138679222 - HAL1 LINE L1 -6 2501 2049 * 1587 251 65 5 chr6 43736015 43736552 -138678690 - L1MEc LINE L1 -3296 2919 2383 5033 120 43 26 chr6 43736552 43737419 -138677823 - L1PA15 LINE L1 0 6165 2244 2546 134 57 98 chr6 43737429 43738009 -138677233 - MER21A LTR ERV1 0 931 376 453 141 35 24 chr6 43738017 43738102 -138677140 - MER21A LTR ERV1 -670 261 176 7795 197 49 35 chr6 43738109 43738478 -138676764 - L1P LINE L1 -874 5272 4910 2083 112 3 7 chr6 43738478 43738773 -138676469 - AluSx SINE Alu -14 298 5 7795 197 49 35 chr6 43738773 43739409 -138675833 - L1P LINE L1 -1236 4910 4284 2004 126 7 16 chr6 43739409 43739719 -138675523 + AluY SINE Alu 1 307 -4 7795 197 49 35 chr6 43739719 43740696 -138674546 - L1P LINE L1 -1862 4284 3261 1805 240 11 0 chr6 43740696 43741054 -138674188 - L1PA13 LINE L1 -6425 362 1 2876 255 146 13 chr6 43741087 43741540 -138673702 - L1MEc LINE L1 -4007 2389 1998 1601 186 7 16 chr6 43741540 43741847 -138673395 - AluJb SINE Alu -6 306 3 2876 255 146 13 chr6 43741847 43742762 -138672480 - L1MEc LINE L1 -4398 1998 839 1558 240 68 8 chr6 43742768 43743239 -138672003 - L1MEc LINE L1 -5606 790 292 261 0 0 0 chr6 43743246 43743275 -138671967 + (TG)n Simple_repeat Simple_repeat 2 30 0 471 206 143 8 chr6 43743275 43743401 -138671841 - L1MEc LINE L1 -6218 178 36 252 239 104 0 chr6 43743791 43743858 -138671384 + MIR SINE MIR 2 75 -187 673 206 91 11 chr6 43744308 43744483 -138670759 - MER5A DNA MER1_type 0 189 1 2277 251 115 49 chr6 43744594 43745519 -138669723 - L1M4 LINE L1 -913 5233 4217 2221 70 0 17 chr6 43745519 43745838 -138669404 - AluY SINE Alu 0 314 1 2277 251 115 49 chr6 43745838 43746046 -138669196 - L1M4 LINE L1 -1929 4217 4024 307 276 147 0 chr6 43746657 43746773 -138668469 - L1MC/D LINE L1 -1952 5856 5724 304 262 61 112 chr6 43747281 43747495 -138667747 - L2 LINE L2 0 3313 3111 1491 142 109 22 chr6 43747998 43748272 -138666970 + AluJb SINE Alu 1 298 -14 1328 159 6 132 chr6 43748805 43749132 -138666110 + AluJb SINE Alu 1 286 -26 745 186 0 29 chr6 43749376 43749516 -138665726 - FLAM_A SINE Alu -1 141 6 341 194 14 28 chr6 43751410 43751482 -138663760 + L2 LINE L2 3186 3256 -16 278 244 53 42 chr6 43751868 43751994 -138663248 - MER5A DNA MER1_type -6 172 40 209 296 0 0 chr6 43752275 43752329 -138662913 - MIR3 SINE MIR -11 197 144 355 273 102 48 chr6 43752364 43752551 -138662691 + MIR SINE MIR 63 259 -3 3643 172 66 27 chr6 43752712 43753531 -138661711 - L1MB5 LINE L1 -36 6138 5288 1757 210 61 19 chr6 43753872 43754348 -138660894 - L1ME1 LINE L1 -5 6161 5666 830 284 123 32 chr6 43754359 43754926 -138660316 - L1MC4 LINE L1 0 8042 7424 506 18 0 0 chr6 43755064 43755121 -138660121 - L1HS LINE L1 -71 6084 6028 398 53 18 0 chr6 43755121 43755178 -138660064 + L1HS LINE L1 6096 6153 -2 729 268 67 25 chr6 43755694 43755933 -138659309 + MIR SINE MIR 14 262 0 300 285 88 44 chr6 43756322 43756459 -138658783 - L1ME3A LINE L1 -233 5937 5795 2239 99 7 0 chr6 43756604 43756896 -138658346 + AluSx SINE Alu 4 297 -15 1008 220 134 0 chr6 43757030 43757239 -138658003 - MER8 DNA MER2_type 0 239 3 281 270 10 0 chr6 43757263 43757363 -138657879 - L1M1 LINE L1 -3731 3834 3734 217 130 0 56 chr6 43757386 43757440 -138657802 + (TTTTC)n Simple_repeat Simple_repeat 5 55 0 * 242 209 9 33 chr6 43757435 43757555 -138657687 + CT-rich Low_complexity Low_complexity 1 117 0 944 206 80 10 chr6 43757557 43757756 -138657486 - AluJo SINE Alu -99 213 1 1316 188 9 9 chr6 43757808 43758032 -138657210 + MER8 DNA MER2_type 15 238 -1 375 273 78 13 chr6 43758064 43758268 -138656974 - L1M1 LINE L1 -3890 3675 3467 563 247 37 19 chr6 43759006 43759168 -138656074 - MER5B DNA MER1_type 0 178 14 1854 148 53 0 chr6 43759393 43759677 -138655565 - AluSx SINE Alu -13 299 1 1221 184 0 18 chr6 43759853 43760070 -138655172 + AluJo SINE Alu 45 257 -55 512 249 0 36 chr6 43760332 43760499 -138654743 + MER20 DNA MER1_type 1 219 0 940 269 60 0 chr6 43761286 43761520 -138653722 - MIR SINE MIR 0 262 15 180 0 0 0 chr6 43761672 43761692 -138653550 + (T)n Simple_repeat Simple_repeat 1 20 0 2302 89 10 0 chr6 43762043 43762347 -138652895 + AluSc SINE Alu 1 307 -2 763 307 11 30 chr6 43762488 43762755 -138652487 - MIR SINE MIR 0 262 1 249 346 39 0 chr6 43762873 43762951 -138652291 - L2 LINE L2 -4 3309 3229 232 219 0 0 chr6 43764081 43764122 -138651120 - MIR SINE MIR -25 237 197 869 174 90 0 chr6 43764150 43764317 -138650925 + MER8 DNA MER2_type 58 239 0 504 235 35 0 chr6 43764317 43764432 -138650810 - MIR SINE MIR -64 198 80 1361 211 125 0 chr6 43765175 43765478 -138649764 + MER58B DNA MER1_type 1 341 0 509 293 103 44 chr6 43767066 43767148 -138648094 - L1ME4a LINE L1 -106 6015 5939 2089 101 42 3 chr6 43767148 43767435 -138647807 + AluSq SINE Alu 1 298 -15 509 293 103 44 chr6 43767435 43768068 -138647174 - L1ME4a LINE L1 -182 5939 5275 579 217 78 0 chr6 43768174 43768303 -138646939 - Tigger1 DNA MER2_type -2277 141 3 2185 112 0 10 chr6 43768303 43768599 -138646643 + AluSc SINE Alu 1 293 -16 2547 173 64 32 chr6 43768622 43769155 -138646087 + MER44D DNA MER2_type 1 605 0 2404 90 3 0 chr6 43769991 43770301 -138644941 - AluY SINE Alu 0 311 1 2327 72 14 0 chr6 43770878 43771171 -138644071 - AluSg SINE Alu -13 297 1 207 0 0 0 chr6 43771976 43771999 -138643243 + (T)n Simple_repeat Simple_repeat 1 23 0 221 329 12 0 chr6 43772982 43773064 -138642178 + CT-rich Low_complexity Low_complexity 3 85 0 1574 176 0 60 chr6 43773689 43774028 -138641214 + AluJb SINE Alu 1 321 0 461 256 95 48 chr6 43774060 43774376 -138640866 + L1ME4a LINE L1 5554 5884 -237 5220 124 68 124 chr6 43774440 43775742 -138639500 - Tigger3b DNA MER2_type -1 1230 2 1672 301 116 51 chr6 43776283 43776488 -138638754 - L2 LINE L2 0 3313 3123 1554 173 72 0 chr6 43776488 43776765 -138638477 + AluJo SINE Alu 12 308 -4 1672 301 116 51 chr6 43776765 43777346 -138637896 - L2 LINE L2 -190 3123 2581 2390 74 0 3 chr6 43777346 43777645 -138637597 + AluSx SINE Alu 2 299 -13 1672 301 116 51 chr6 43777645 43778146 -138637096 - L2 LINE L2 -732 2581 1923 1067 209 152 57 chr6 43778146 43778606 -138636636 - MLT1D LTR MaLR 0 505 2 1672 301 116 51 chr6 43778606 43778663 -138636579 - L2 LINE L2 -1390 1923 1871 382 279 93 66 chr6 43779762 43779945 -138635297 + MIR SINE MIR 3 190 -72 1767 150 21 11 chr6 43780457 43780743 -138634499 - AluSx SINE Alu -23 289 1 718 70 113 0 chr6 43780996 43781111 -138634131 - MER85 DNA T2_type -11 128 1 30 27 0 0 chr6 43781677 43781714 -138633528 + AT_rich Low_complexity Low_complexity 1 37 0 229 216 0 0 chr6 43781944 43781995 -138633247 + T-rich Low_complexity Low_complexity 1 51 0 907 108 0 0 chr6 43782349 43782469 -138632773 + FLAM_C SINE Alu 11 130 -13 371 240 21 21 chr6 43782496 43782592 -138632650 + MIR3 SINE MIR 89 184 -24 741 186 14 0 chr6 43782752 43782897 -138632345 - MER67A LTR ERV1 0 543 397 267 155 121 0 chr6 43783785 43783843 -138631399 + MIR SINE MIR 128 192 -70 1470 195 40 18 chr6 43784471 43784743 -138630499 + AluJb SINE Alu 11 288 -24 8146 162 71 6 chr6 43784758 43786150 -138629092 + L1M1 LINE L1 1145 2445 -5120 5285 64 6 31 chr6 43786150 43786856 -138628386 + LTR12 LTR ERV1 1 688 0 8146 162 71 6 chr6 43786856 43787279 -138627963 + L1M1 LINE L1 2445 4700 -2865 509 283 102 6 chr6 43788478 43788655 -138626587 + MIR SINE MIR 68 261 -1 759 224 148 19 chr6 43788686 43788950 -138626292 - MER5C DNA MER1_type -3 321 24 246 182 164 0 chr6 43788955 43789010 -138626232 - MER5C DNA MER1_type -260 64 1 1746 174 14 3 chr6 43789443 43789725 -138625517 - AluJb SINE Alu -27 285 1 496 268 147 6 chr6 43790033 43790219 -138625023 - MIR SINE MIR -21 241 32 1200 266 162 11 chr6 43790293 43790843 -138624399 - L1MC4 LINE L1 -151 7891 7259 1719 236 134 9 chr6 43790859 43791396 -138623846 - L1MC4 LINE L1 -958 7084 6481 473 220 0 37 chr6 43792385 43792494 -138622748 - FLAM_A SINE Alu -36 106 2 1618 141 145 0 chr6 43792599 43792903 -138622339 - MER7A DNA MER2_type 0 346 1 1858 178 16 14 chr6 43792959 43793324 -138621918 - MER47A DNA MER2_type 0 366 1 758 110 6 9 chr6 43793616 43793777 -138621465 + AluSg/x SINE Alu 69 269 -43 306 87 0 0 chr6 43793778 43793824 -138621418 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 226 258 41 0 chr6 43793939 43794036 -138621206 + L1MC4 LINE L1 7942 8042 0 2153 80 0 14 chr6 43794281 43794603 -138620639 + AluY SINE Alu 1 318 0 1486 154 97 41 chr6 43795368 43795663 -138619579 + AluJo SINE Alu 1 310 0 23 0 0 0 chr6 43796352 43796375 -138618867 + AT_rich Low_complexity Low_complexity 1 23 0 970 185 67 0 chr6 43797110 43797305 -138617937 + MER3 DNA MER1_type 2 209 0 1591 116 0 25 chr6 43797783 43798025 -138617217 - AluSq SINE Alu -77 236 1 1758 184 31 0 chr6 43798061 43798354 -138616888 - AluJo SINE Alu -10 302 1 747 158 30 24 chr6 43798355 43798520 -138616722 - L1ME1 LINE L1 -263 5972 5807 448 267 0 0 chr6 43798522 43798608 -138616634 - FRAM/FAM SINE Alu -92 84 1 2389 217 120 8 chr6 43798608 43799912 -138615330 - L1ME1 LINE L1 -475 5760 4299 229 77 26 26 chr6 43799916 43799955 -138615287 - THE1A LTR MaLR 0 355 317 1316 245 72 46 chr6 43800055 43800594 -138614648 - L1ME1 LINE L1 -5555 841 289 615 227 80 25 chr6 43800609 43800772 -138614470 - MER45A DNA AcHobo -1 177 6 600 257 19 44 chr6 43800797 43801003 -138614239 - L1ME1 LINE L1 -6134 262 62 22 70 0 0 chr6 43802309 43802352 -138612890 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 43802417 43802442 -138612800 + AT_rich Low_complexity Low_complexity 1 25 0 2983 129 46 65 chr6 43802467 43803079 -138612163 - MER4A LTR ERV1 0 600 1 22 0 0 0 chr6 43803101 43803123 -138612119 + AT_rich Low_complexity Low_complexity 1 22 0 1452 152 147 34 chr6 43803160 43803179 -138612063 - Looper DNA T2_type -1085 473 458 5914 135 67 36 chr6 43803179 43804079 -138611163 + Tigger3b DNA MER2_type 2 949 -2079 2346 86 3 10 chr6 43804079 43804382 -138610860 - AluSp SINE Alu -2 311 11 5914 135 67 36 chr6 43804382 43804673 -138610569 + Tigger3b DNA MER2_type 949 1230 -1 1452 152 147 34 chr6 43804673 43805061 -138610181 - Looper DNA T2_type -1100 458 20 1375 118 86 14 chr6 43855615 43855835 -138559407 - MER46A DNA MER2_type 0 236 1 250 297 88 11 chr6 43856326 43856417 -138558825 - HAL1 LINE L1 -598 1909 1812 644 262 114 90 chr6 43856483 43856572 -138558670 - HAL1 LINE L1 -847 1660 1575 1854 156 0 10 chr6 43856572 43856867 -138558375 + AluJb SINE Alu 1 292 -20 644 262 114 90 chr6 43856867 43857014 -138558228 - HAL1 LINE L1 -932 1575 1433 2182 104 0 0 chr6 43857014 43857294 -138557948 - AluSg SINE Alu -30 280 1 644 262 114 90 chr6 43857294 43857881 -138557361 - HAL1 LINE L1 -1074 1433 816 1647 142 20 48 chr6 43857915 43858210 -138557032 - AluJo SINE Alu -25 287 1 222 333 49 0 chr6 43858463 43858544 -138556698 + MIR SINE MIR 165 249 -13 834 200 7 7 chr6 43858899 43859034 -138556208 - AluJb SINE Alu -25 287 153 1620 125 0 13 chr6 43859041 43859273 -138555969 - AluSx SINE Alu -83 229 1 2253 94 0 7 chr6 43859328 43859625 -138555617 - AluY SINE Alu -16 295 1 314 173 0 0 chr6 43859643 43859695 -138555547 - MER6B DNA MER2_type -1 209 158 235 0 0 54 chr6 43859711 43859748 -138555494 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 2319 94 0 23 chr6 43860876 43861185 -138554057 - AluSc SINE Alu -7 302 1 901 199 36 91 chr6 43861556 43861863 -138553379 - L1MC4 LINE L1 0 8042 7753 2060 85 4 0 chr6 43862362 43862622 -138552620 + AluSx SINE Alu 48 308 -4 399 158 10 20 chr6 43862895 43862996 -138552246 + CT-rich Low_complexity Low_complexity 2 101 0 2421 87 0 0 chr6 43863580 43863880 -138551362 - AluSx SINE Alu -12 300 1 929 174 130 5 chr6 43863948 43864132 -138551110 + MER6B DNA MER2_type 1 207 -3 235 106 0 21 chr6 43864161 43864208 -138551034 + LTR66 LTR ERVL 394 439 -171 234 222 0 0 chr6 43864208 43864262 -138550980 + (CA)n Simple_repeat Simple_repeat 2 55 0 239 217 0 17 chr6 43864269 43864329 -138550913 - L1MCa LINE L1 -4362 2064 2006 249 159 0 0 chr6 43864338 43864382 -138550860 + (CATA)n Simple_repeat Simple_repeat 2 45 0 698 218 144 13 chr6 43865767 43865996 -138549246 + MIR SINE MIR 1 259 -3 947 150 13 13 chr6 43866085 43866238 -138549004 + FRAM SINE Alu 2 154 -22 1777 155 25 59 chr6 43866270 43866624 -138548618 + L1MD1 LINE L1 5901 6242 0 2185 114 10 3 chr6 43866975 43867273 -138547969 - AluSp SINE Alu -13 300 1 237 108 0 0 chr6 43867501 43867538 -138547704 + (TG)n Simple_repeat Simple_repeat 2 38 0 1890 124 0 4 chr6 43868374 43868632 -138546610 + AluJb SINE Alu 2 258 -54 525 278 134 33 chr6 43868809 43869094 -138546148 + L1MC4 LINE L1 7600 7938 -104 1908 210 45 82 chr6 43869094 43869669 -138545573 - MLT2B3 LTR ERVL 0 554 1 525 278 134 33 chr6 43869669 43869779 -138545463 + L1MC4 LINE L1 7938 8035 -7 533 245 26 39 chr6 43869811 43869966 -138545276 + L1M4 LINE L1 4046 4198 -1948 2249 99 10 16 chr6 43870002 43870305 -138544937 - AluSc SINE Alu -8 301 1 2213 115 32 12 chr6 43871904 43872109 -138543133 - MER2 DNA MER2_type 0 345 129 2225 177 28 32 chr6 43872109 43872545 -138542697 + Tigger2a DNA MER2_type 1 434 0 2213 115 32 12 chr6 43872545 43872677 -138542565 - MER2 DNA MER2_type -216 129 1 344 182 232 10 chr6 43875503 43875602 -138539640 - L2 LINE L2 0 3313 3193 1059 248 152 8 chr6 43875907 43876302 -138538940 - L2 LINE L2 -337 2977 2526 189 0 0 0 chr6 43877938 43877959 -138537283 + (T)n Simple_repeat Simple_repeat 1 21 0 448 106 0 0 chr6 43877959 43878025 -138537217 - AluJ/FLAM SINE Alu -236 76 11 2168 95 36 13 chr6 43881002 43881307 -138533935 - AluSx SINE Alu 0 312 1 1448 165 18 93 chr6 43881753 43882087 -138533155 + AluJo SINE Alu 1 309 -3 448 139 12 12 chr6 43882096 43882182 -138533060 - MER5A DNA MER1_type -11 178 93 2146 236 46 89 chr6 43882194 43882817 -138532425 - L1MC4 LINE L1 -434 7608 7028 1696 167 71 9 chr6 43882817 43883141 -138532101 + MER2 DNA MER2_type 1 344 0 2146 236 46 89 chr6 43883141 43883345 -138531897 - L1MC4 LINE L1 -1014 7028 6817 1521 99 47 9 chr6 43884319 43884551 -138530691 - pTR5 LTR ERV1 -2026 412 172 326 250 11 0 chr6 43884553 43884645 -138530597 - LTR30 LTR ERV1 -79 643 551 4270 118 123 31 chr6 43884645 43885565 -138529677 - pTR5 LTR ERV1 -406 2032 742 279 89 71 18 chr6 43886496 43886552 -138528690 - L1MB7 LINE L1 0 6184 6126 3366 196 64 24 chr6 43886658 43887423 -138527819 - L1ME1 LINE L1 -56 6110 5315 1482 173 203 25 chr6 43887440 43887914 -138527328 - L1ME1 LINE L1 -1587 4559 4002 308 305 23 62 chr6 43888315 43888443 -138526799 - MIR3 SINE MIR -2 206 84 9946 163 33 14 chr6 43889020 43892019 -138523223 - L1PB1 LINE L1 -2 6149 3100 1727 172 17 0 chr6 43892911 43893201 -138522041 + AluJo SINE Alu 1 295 -17 187 281 88 94 chr6 43893287 43893607 -138521635 - L3 LINE CR1 -8 1569 1252 2617 41 0 3 chr6 43894149 43894444 -138520798 + AluY SINE Alu 1 294 -17 2498 78 0 7 chr6 43896144 43896453 -138518789 + AluSx SINE Alu 1 307 -5 504 281 124 28 chr6 43898202 43898710 -138516532 - L2 LINE L2 -63 3250 2686 727 173 8 15 chr6 43898713 43898846 -138516396 + FLAM_C SINE Alu 2 133 0 220 342 0 0 chr6 43899218 43899297 -138515945 + L2 LINE L2 2863 2941 -372 601 286 160 41 chr6 43899297 43899852 -138515390 - L2 LINE L2 -755 2559 1939 213 253 101 13 chr6 43900148 43900227 -138515015 - L2 LINE L2 -195 3077 2992 181 279 13 38 chr6 43900416 43900495 -138514747 - L2 LINE L2 -667 2647 2571 1074 308 100 13 chr6 43900535 43901065 -138514177 - L2 LINE L2 -673 2641 2066 921 193 0 0 chr6 43901175 43901336 -138513906 - AluJb SINE Alu -16 296 136 429 0 49 0 chr6 43904853 43904914 -138510328 + (TA)n Simple_repeat Simple_repeat 2 65 0 4692 155 50 9 chr6 43907616 43908967 -138506275 - L1MA4A LINE L1 0 6156 4826 325 200 62 0 chr6 43909751 43909816 -138505426 - AluJ/FLAM SINE Alu -212 90 22 1627 146 11 22 chr6 43909837 43910111 -138505131 + AluJo SINE Alu 31 301 -11 724 245 108 56 chr6 43916534 43916942 -138498300 + HAL1 LINE L1 1974 2402 -105 722 139 41 8 chr6 43917215 43917337 -138497905 + AluJb SINE Alu 2 127 -185 24 0 0 0 chr6 43917378 43917402 -138497840 + AT_rich Low_complexity Low_complexity 1 24 0 884 147 7 7 chr6 43917416 43917559 -138497683 + FRAM SINE Alu 8 150 -26 25 31 0 0 chr6 43917560 43917592 -138497650 + AT_rich Low_complexity Low_complexity 1 32 0 307 67 67 0 chr6 43917730 43917775 -138497467 + L1MB3 LINE L1 5904 5951 -232 291 290 0 0 chr6 43918495 43918564 -138496678 - L2 LINE L2 -17 3255 3187 448 307 97 31 chr6 43918732 43919070 -138496172 - L2 LINE L2 -628 2686 2313 306 0 0 0 chr6 43919070 43919104 -138496138 + (TG)n Simple_repeat Simple_repeat 1 34 0 448 307 97 31 chr6 43919104 43919188 -138496054 - L2 LINE L2 -1001 2313 2236 583 221 0 0 chr6 43919199 43919326 -138495916 - L1MB3 LINE L1 -3 6180 6054 854 248 43 0 chr6 43919328 43919558 -138495684 - L1MB3 LINE L1 -261 5922 5683 670 251 250 27 chr6 43919558 43920119 -138495123 - L2 LINE L2 -1066 2248 1563 3150 229 114 46 chr6 43920216 43921347 -138493895 + MER69B DNA AcHobo 8 1215 -11 1874 273 103 3 chr6 43921755 43922415 -138492827 + L1MB5 LINE L1 5449 6174 0 426 248 93 23 chr6 43922548 43922677 -138492565 + MLT1G1 LTR MaLR 430 567 -28 231 303 59 0 chr6 43922841 43922960 -138492282 - L2 LINE L2 -3162 152 27 484 254 59 30 chr6 43923187 43923356 -138491886 + MER5B DNA MER1_type 3 176 -2 257 246 101 0 chr6 43924522 43924591 -138490651 - MIR SINE MIR -70 192 117 205 163 0 41 chr6 43924797 43924846 -138490396 + T-rich Low_complexity Low_complexity 2 48 0 238 322 56 21 chr6 43925705 43925848 -138489394 + MER5B DNA MER1_type 26 173 -5 2209 83 0 7 chr6 43925983 43926297 -138488945 - AluSc SINE Alu 0 309 1 237 343 58 0 chr6 43927517 43927654 -138487588 + L2 LINE L2 2660 2804 -510 189 206 29 73 chr6 43927765 43927833 -138487409 + L2 LINE L2 2988 3052 -220 24 0 0 0 chr6 43931374 43931398 -138483844 + AT_rich Low_complexity Low_complexity 1 24 0 441 0 0 0 chr6 43932237 43932286 -138482956 + (TG)n Simple_repeat Simple_repeat 1 49 0 324 0 0 0 chr6 43932528 43932564 -138482678 + (A)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr6 43932562 43932592 -138482650 + (TAA)n Simple_repeat Simple_repeat 2 31 0 * 198 0 0 0 chr6 43936238 43936260 -138478982 + (TGG)n Simple_repeat Simple_repeat 1 22 0 868 175 12 0 chr6 43936319 43936479 -138478763 + MER6 DNA MER2_type 121 282 -583 242 248 157 36 chr6 43939148 43939454 -138475788 - L2 LINE L2 -97 3175 2833 2298 90 0 0 chr6 43939526 43939832 -138475410 - AluSc SINE Alu 0 306 1 2074 119 3 3 chr6 43942386 43942705 -138472537 + AluSx SINE Alu 1 319 0 2542 50 10 3 chr6 43943660 43943958 -138471284 - AluY SINE Alu -11 300 1 412 303 34 39 chr6 43944025 43944203 -138471039 - MIR3 SINE MIR -29 179 3 349 241 83 9 chr6 43944567 43944675 -138470567 - L2 LINE L2 -19 3253 3138 309 188 0 59 chr6 43944684 43944769 -138470473 - L1ME3A LINE L1 -228 5942 5863 383 234 11 11 chr6 43946175 43946269 -138468973 + MIR SINE MIR 37 130 -132 631 316 109 30 chr6 43946458 43946902 -138468340 - L1ME3A LINE L1 -221 5949 5469 446 239 68 0 chr6 43946902 43947019 -138468223 + MIR SINE MIR 138 262 0 327 303 50 0 chr6 43947275 43947374 -138467868 - L2 LINE L2 -3 3269 3166 1139 205 29 67 chr6 43949335 43949676 -138465566 + MLT1A2 LTR MaLR 1 328 -46 1926 131 3 39 chr6 43950176 43950343 -138464899 - AluJo SINE Alu -17 295 142 2220 147 0 0 chr6 43950343 43950655 -138464587 - AluSx SINE Alu 0 312 1 1926 131 3 39 chr6 43950655 43950793 -138464449 - AluJo SINE Alu -170 142 1 2128 130 3 13 chr6 43950865 43951172 -138464070 + AluSx SINE Alu 1 304 -8 691 215 123 68 chr6 43952054 43952273 -138462969 - MER45C DNA AcHobo -21 932 702 1142 259 65 9 chr6 43952284 43952642 -138462600 - MER45C DNA AcHobo -571 382 1 1125 104 0 0 chr6 43953587 43953750 -138461492 + L1PA4 LINE L1 5993 6155 0 236 224 52 0 chr6 43953800 43953858 -138461384 + MIR SINE MIR 124 184 -78 403 286 59 76 chr6 43956393 43956631 -138458611 + HAL1b LINE L1 1093 1326 -22 741 276 11 23 chr6 43956821 43957085 -138458157 + MIR SINE MIR 2 262 0 359 295 20 31 chr6 43957862 43958023 -138457219 - MIR SINE MIR -63 145 38 326 299 156 0 chr6 43958219 43958373 -138456869 + MIR SINE MIR 85 262 0 21 0 0 0 chr6 43959484 43959505 -138455737 + AT_rich Low_complexity Low_complexity 1 21 0 1060 319 27 19 chr6 43959580 43960060 -138455182 + HAL1 LINE L1 224 707 -1800 732 313 125 8 chr6 43960087 43960448 -138454794 - L2 LINE L2 -2 3311 2909 240 241 103 11 chr6 43960459 43960546 -138454696 + HAL1 LINE L1 734 828 -1679 323 273 10 40 chr6 43960794 43960893 -138454349 + L1MA4A LINE L1 675 770 -6079 8177 176 48 36 chr6 43960894 43961556 -138453686 + L1MA4A LINE L1 3634 4287 -2718 958 182 51 6 chr6 43961556 43961732 -138453510 + FRAM SINE Alu 1 176 0 8177 176 48 36 chr6 43961732 43962758 -138452484 + L1MA4A LINE L1 4287 5299 -1706 2257 112 13 7 chr6 43962758 43963062 -138452180 - AluSc SINE Alu -3 306 1 8177 176 48 36 chr6 43963062 43964736 -138450506 + L1MA4A LINE L1 5299 7005 0 3456 148 54 16 chr6 43964736 43965414 -138449828 + L1MB8 LINE L1 5472 6177 -1 3113 231 54 89 chr6 43965420 43966225 -138449017 + HAL1 LINE L1 863 1694 -813 25 0 0 0 chr6 43966225 43966250 -138448992 + AT_rich Low_complexity Low_complexity 1 25 0 3113 231 54 89 chr6 43966250 43966342 -138448900 + HAL1 LINE L1 1694 1788 -719 1715 130 16 0 chr6 43966342 43966589 -138448653 + AluSx SINE Alu 60 310 -2 3113 231 54 89 chr6 43966589 43966903 -138448339 + HAL1 LINE L1 1788 2035 -472 2099 88 3 88 chr6 43966903 43967222 -138448020 - AluSg1 SINE Alu -17 292 1 3113 231 54 89 chr6 43967222 43967568 -138447674 + HAL1 LINE L1 2035 2391 -116 715 271 136 26 chr6 43967568 43967878 -138447364 + L1MC/D LINE L1 5467 5810 -1998 1847 168 7 7 chr6 43968021 43968324 -138446918 + AluJb SINE Alu 1 303 -9 23 92 0 0 chr6 43968462 43968527 -138446715 + AT_rich Low_complexity Low_complexity 1 65 0 331 290 46 38 chr6 43968532 43968663 -138446579 + HAL1 LINE L1 2368 2499 -8 235 152 22 0 chr6 43969472 43969518 -138445724 - L2 LINE L2 -1 3312 3266 513 258 101 10 chr6 43969646 43969844 -138445398 + Charlie8 DNA MER1_type 1 216 -2201 636 196 43 31 chr6 43970193 43970356 -138444886 + MER5B DNA MER1_type 1 165 -13 414 39 0 0 chr6 43971207 43971259 -138443983 + (TG)n Simple_repeat Simple_repeat 2 53 0 2615 53 0 0 chr6 43971829 43972133 -138443109 + AluY SINE Alu 1 304 -7 1915 160 0 3 chr6 43972142 43972435 -138442807 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr6 43974357 43974378 -138440864 + AT_rich Low_complexity Low_complexity 1 21 0 2281 74 0 48 chr6 43974381 43974716 -138440526 + AluY SINE Alu 1 320 0 748 179 81 12 chr6 43977530 43977703 -138437539 - MER5A DNA MER1_type -4 185 1 2323 88 0 41 chr6 43977708 43978027 -138437215 + AluSc SINE Alu 1 306 -3 210 71 0 0 chr6 43978366 43978394 -138436848 + (T)n Simple_repeat Simple_repeat 1 28 0 245 284 12 12 chr6 43978421 43978502 -138436740 + MIR SINE MIR 61 141 -67 395 114 143 14 chr6 43978871 43978941 -138436301 - MER58 DNA MER1_type 0 2420 2342 285 194 113 0 chr6 43978948 43979010 -138436232 - MER58 DNA MER1_type -121 94 26 2195 114 3 31 chr6 43979806 43980123 -138435119 - AluSc SINE Alu -1 308 1 2332 107 3 0 chr6 43982392 43982701 -138432541 + AluSg SINE Alu 1 310 0 2552 57 10 0 chr6 43982939 43983240 -138432002 - AluY SINE Alu -7 304 1 2316 109 3 3 chr6 43983577 43983888 -138431354 - AluSq SINE Alu -2 311 1 1687 178 7 14 chr6 43984026 43984318 -138430924 - AluJo SINE Alu -22 290 1 1919 172 0 0 chr6 43984612 43984909 -138430333 + AluSx SINE Alu 1 297 -15 344 308 71 16 chr6 43986172 43986354 -138428888 - L2 LINE L2 -3 3310 3119 204 135 0 0 chr6 43987424 43987461 -138427781 + (CA)n Simple_repeat Simple_repeat 2 38 0 2060 121 68 82 chr6 43988562 43988761 -138426481 + L1MC1 LINE L1 5914 6114 -219 1682 141 58 24 chr6 43988761 43989052 -138426190 + AluJo SINE Alu 1 301 -11 2060 121 68 82 chr6 43989052 43989265 -138425977 + L1MC1 LINE L1 6114 6320 -13 2430 97 0 0 chr6 43989275 43989583 -138425659 + AluSc SINE Alu 1 308 -1 2218 102 10 3 chr6 43989598 43989891 -138425351 + AluSg SINE Alu 1 295 -15 1407 281 45 26 chr6 43990053 43990671 -138424571 - L3 LINE CR1 -300 1277 586 792 297 116 32 chr6 43990658 43990894 -138424348 + L2 LINE L2 2466 2681 -632 * 2335 104 3 3 chr6 43990894 43991203 -138424039 + AluSp SINE Alu 1 309 -4 792 297 116 32 chr6 43991203 43991742 -138423500 + L2 LINE L2 2681 3306 -7 2152 67 0 0 chr6 43992951 43993206 -138422036 - AluY SINE Alu -11 300 46 31 0 0 0 chr6 43993297 43993328 -138421914 + AT_rich Low_complexity Low_complexity 1 31 0 935 152 0 0 chr6 43993347 43993479 -138421763 - FLAM_A SINE Alu -1 132 1 300 272 54 11 chr6 43993961 43994053 -138421189 - L2 LINE L2 -15 3257 3162 398 307 0 0 chr6 43995357 43995471 -138419771 - MIR SINE MIR -65 143 30 205 305 0 0 chr6 43995867 43995926 -138419316 + L2 LINE L2 3254 3312 -1 611 151 118 0 chr6 43996481 43996600 -138418642 - Charlie4 DNA MER1_type -13 1948 1816 1159 188 133 33 chr6 43998537 43998808 -138416434 + AluJo SINE Alu 1 298 -14 3283 117 26 36 chr6 43998840 43999152 -138416090 - MER4B LTR ERV1 -26 753 439 2576 50 0 3 chr6 43999152 43999454 -138415788 - AluY SINE Alu -10 301 1 3283 117 26 36 chr6 43999454 43999702 -138415540 - MER4B LTR ERV1 -340 439 32 2404 81 0 29 chr6 43999832 44000142 -138415100 + AluSc SINE Alu 1 301 -8 198 300 0 0 chr6 44001056 44001116 -138414126 + L2 LINE L2 3210 3269 -3 475 246 132 12 chr6 44003067 44003234 -138412008 + MIR3 SINE MIR 20 206 -2 456 280 111 51 chr6 44005761 44006439 -138408803 - L2 LINE L2 -4 3309 2590 867 228 87 0 chr6 44009605 44009846 -138405396 + HAL1 LINE L1 1358 1619 -888 1604 164 3 41 chr6 44009932 44010225 -138405017 - AluJo SINE Alu -8 304 23 297 300 88 12 chr6 44011291 44011461 -138403781 + HAL1b LINE L1 746 928 -420 2159 105 0 36 chr6 44011472 44011777 -138403465 + AluSg SINE Alu 1 294 -16 2294 111 0 0 chr6 44011946 44012244 -138402998 - AluSx SINE Alu -12 300 3 2117 120 31 3 chr6 44012299 44012590 -138402652 + AluSx SINE Alu 1 299 -13 2138 103 0 24 chr6 44013506 44013825 -138401417 + AluSx SINE Alu 1 312 0 1754 135 63 74 chr6 44013849 44014228 -138401014 - THE1C LTR MaLR 0 375 1 595 259 117 29 chr6 44014629 44015006 -138400236 + MLT1J2 LTR MaLR 64 450 0 1053 214 31 0 chr6 44015096 44015133 -138400109 + AluJo SINE Alu 85 119 -193 246 32 0 0 chr6 44015133 44015164 -138400078 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1053 214 31 0 chr6 44015164 44015318 -138399924 + AluJo SINE Alu 119 282 -30 5146 123 9 14 chr6 44015322 44016120 -138399122 + L1MB7 LINE L1 5372 6165 -19 1838 67 28 35 chr6 44016478 44016760 -138398482 + L1PA6 LINE L1 5873 6152 -2 1384 171 22 87 chr6 44017563 44017884 -138397358 - AluJo SINE Alu -12 300 1 1731 167 29 0 chr6 44017891 44018172 -138397070 - AluJo SINE Alu -17 295 7 951 226 40 4 chr6 44018411 44018659 -138396583 + L1ME3 LINE L1 5906 6162 0 29 21 0 21 chr6 44018659 44018681 -138396561 + AT_rich Low_complexity Low_complexity 1 22 -24 2235 94 0 0 chr6 44018681 44018967 -138396275 - AluSx SINE Alu -26 286 1 29 21 0 21 chr6 44018967 44018991 -138396251 + AT_rich Low_complexity Low_complexity 22 46 0 217 382 73 0 chr6 44019154 44019264 -138395978 + L2 LINE L2 3151 3268 -4 2315 103 0 0 chr6 44019290 44019592 -138395650 + AluY SINE Alu 1 302 -9 457 312 24 26 chr6 44019610 44019817 -138395425 - MIR SINE MIR -1 261 56 1406 130 23 76 chr6 44020104 44020366 -138394876 - AluJo SINE Alu -32 280 33 772 269 69 59 chr6 44021423 44021619 -138393623 - L1ME4a LINE L1 -208 5913 5720 1688 174 49 7 chr6 44021619 44021906 -138393336 - AluJo SINE Alu -12 300 2 772 269 69 59 chr6 44021906 44022233 -138393009 - L1ME4a LINE L1 -401 5720 5385 324 325 48 0 chr6 44023920 44024046 -138391196 + MIR3 SINE MIR 75 206 -2 27 49 0 0 chr6 44025990 44026031 -138389211 + AT_rich Low_complexity Low_complexity 1 41 0 1892 128 0 56 chr6 44026182 44026501 -138388741 - AluJb SINE Alu -11 301 1 2122 116 0 0 chr6 44026972 44027372 -138387870 + AluSq SINE Alu 1 400 0 191 341 99 0 chr6 44028225 44028316 -138386926 + L2 LINE L2 3146 3245 -27 2328 67 0 3 chr6 44028339 44028647 -138386595 + AluY SINE Alu 1 307 0 517 143 0 17 chr6 44032219 44032361 -138382881 + MER58A DNA MER1_type 45 222 -2 443 192 0 58 chr6 44033933 44034037 -138381205 - Tigger7 DNA MER2_type 0 2487 2390 * 980 221 26 66 chr6 44034036 44034308 -138380934 - Tigger7 DNA MER2_type -2220 267 7 6958 24 1 0 chr6 44034761 44035611 -138379631 - L1P LINE L1 -1694 4452 3602 7576 25 2 1 chr6 44035611 44037190 -138378052 + L1PA4 LINE L1 4573 6152 -3 2297 101 0 0 chr6 44038019 44038315 -138376927 - AluSx SINE Alu -16 296 1 411 120 0 27 chr6 44038437 44038512 -138376730 + L1MB8 LINE L1 6106 6178 0 22 0 0 0 chr6 44042113 44042135 -138373107 + AT_rich Low_complexity Low_complexity 1 22 0 1085 231 129 36 chr6 44043287 44043737 -138371505 + L2 LINE L2 2821 3312 -1 1590 164 0 4 chr6 44044047 44044291 -138370951 + AluJo SINE Alu 1 243 -69 427 277 48 59 chr6 44045912 44046183 -138369059 - L2 LINE L2 -730 2584 2317 575 320 55 39 chr6 44046416 44046672 -138368570 + L3 LINE CR1 36 295 -1282 258 136 0 0 chr6 44047175 44047219 -138368023 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 3317 119 36 57 chr6 44047333 44047481 -138367761 + MER7C DNA MER2_type 2 152 -2876 2380 108 0 0 chr6 44047481 44047788 -138367454 + AluSq SINE Alu 1 307 -6 315 0 0 0 chr6 44047791 44047826 -138367416 + (CA)n Simple_repeat Simple_repeat 2 36 0 3317 119 36 57 chr6 44047826 44047990 -138367252 + MER7C DNA MER2_type 154 320 -2708 812 134 0 37 chr6 44047990 44048124 -138367118 - FLAM_C SINE Alu -2 131 3 3317 119 36 57 chr6 44048124 44048420 -138366822 + MER7C DNA MER2_type 320 602 0 2136 102 24 3 chr6 44049335 44049629 -138365613 + AluSx SINE Alu 5 304 -8 1611 203 0 3 chr6 44049772 44050063 -138365179 + AluSx SINE Alu 1 290 -22 959 215 71 71 chr6 44051150 44051545 -138363697 - MLT1I LTR MaLR -14 395 1 428 245 79 66 chr6 44051593 44051874 -138363368 - L1MC/D LINE L1 -359 5803 5540 * 11359 72 2 7 chr6 44051869 44052631 -138362611 - L1P LINE L1 -1687 4459 3694 2345 102 0 6 chr6 44052631 44052945 -138362297 - AluSq SINE Alu -1 312 1 11359 72 2 7 chr6 44052945 44053823 -138361419 - L1P LINE L1 -2452 3694 2828 6840 50 23 1 chr6 44053823 44055496 -138359746 + L1PA7 LINE L1 4468 6154 0 250 232 115 43 chr6 44055541 44055747 -138359495 - L1MC/D LINE L1 -656 5522 5300 1935 158 0 3 chr6 44055862 44056146 -138359096 - AluJo SINE Alu -28 284 2 403 290 31 53 chr6 44056172 44056445 -138358797 - L1MC/D LINE L1 -1059 5087 4822 2161 132 3 10 chr6 44056445 44056756 -138358486 + AluSx SINE Alu 1 309 -3 403 290 31 53 chr6 44056756 44056837 -138358405 - L1MC/D LINE L1 -1324 4822 4741 205 256 0 0 chr6 44056856 44056895 -138358347 + polypyrimidine Low_complexity Low_complexity 3 41 0 1200 250 66 90 chr6 44056987 44057767 -138357475 - L1MC/D LINE L1 -2845 3301 2551 2188 106 7 0 chr6 44057767 44058059 -138357183 + AluSg SINE Alu 1 294 -16 1200 250 66 90 chr6 44058059 44058326 -138356916 - L1MC/D LINE L1 -3595 2551 2279 2257 82 0 47 chr6 44058518 44058836 -138356406 - AluY SINE Alu -8 303 1 21 0 0 0 chr6 44058985 44059006 -138356236 + AT_rich Low_complexity Low_complexity 1 21 0 2817 116 21 29 chr6 44059061 44059543 -138355699 - L1MA4A LINE L1 -12 6291 5814 * 19947 29 0 0 chr6 44059537 44062705 -138352537 - L1PA4 LINE L1 0 6155 2988 5241 136 36 5 chr6 44062710 44063163 -138352079 - L1MA6 LINE L1 -42 6258 5820 366 23 0 0 chr6 44063163 44063206 -138352036 + (TA)n Simple_repeat Simple_repeat 1 43 0 5241 136 36 5 chr6 44063206 44064000 -138351242 - L1MA6 LINE L1 -480 5820 4975 229 104 0 0 chr6 44064520 44064568 -138350674 - LTR66 LTR ERVL -169 441 394 302 281 49 0 chr6 44064568 44064650 -138350592 + L1MC4 LINE L1 6618 6703 -1339 200 229 21 0 chr6 44064781 44064829 -138350413 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 2297 114 0 0 chr6 44064947 44065254 -138349988 + AluSg SINE Alu 1 307 -3 670 175 103 0 chr6 44065284 44065410 -138349832 - FLAM_C SINE Alu -2 141 3 686 182 8 8 chr6 44065632 44065753 -138349489 + L2 LINE L2 3193 3313 0 2096 140 3 7 chr6 44066158 44066465 -138348777 - AluSx SINE Alu -6 306 1 1868 156 13 7 chr6 44069280 44069451 -138345791 - AluJb SINE Alu -7 305 130 198 0 0 0 chr6 44069451 44069473 -138345769 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1868 156 13 7 chr6 44069473 44069602 -138345640 - AluJb SINE Alu -182 130 3 2194 107 4 0 chr6 44069769 44070084 -138345158 + AluSx SINE Alu 1 316 0 2196 82 36 0 chr6 44070112 44070392 -138344850 - AluSc SINE Alu -19 290 1 23972 138 32 33 chr6 44071343 44071475 -138343767 - L1MA3 LINE L1 0 7724 7593 297 0 0 0 chr6 44071475 44071508 -138343734 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2141 84 11 11 chr6 44071508 44071792 -138343450 - AluSx SINE Alu -28 284 1 23972 138 32 33 chr6 44071792 44072536 -138342706 - L1MA3 LINE L1 -130 7594 6851 2316 98 3 0 chr6 44072536 44072842 -138342400 - AluSx SINE Alu -5 307 1 23972 138 32 33 chr6 44072842 44074429 -138340813 - L1MA3 LINE L1 -873 6851 5264 2166 107 31 0 chr6 44074429 44074720 -138340522 - AluSx SINE Alu -10 302 3 23972 138 32 33 chr6 44074720 44074861 -138340381 - L1MA3 LINE L1 -2460 5264 5124 1657 60 0 0 chr6 44074861 44075093 -138340149 - AluY SINE Alu 0 315 84 23972 138 32 33 chr6 44075093 44075536 -138339706 - L1MA3 LINE L1 -2600 5124 4682 2404 72 3 0 chr6 44075536 44075829 -138339413 - AluY SINE Alu -17 294 1 23972 138 32 33 chr6 44075829 44077680 -138337562 - L1MA3 LINE L1 -3042 4682 2831 2113 122 7 3 chr6 44077680 44077975 -138337267 - AluSg SINE Alu -14 296 1 23972 138 32 33 chr6 44077975 44078616 -138336626 - L1MA3 LINE L1 -4893 2831 2191 1961 81 154 0 chr6 44078616 44078876 -138336366 - AluSx SINE Alu -2 300 1 23972 138 32 33 chr6 44078876 44081041 -138334201 - L1MA3 LINE L1 -5533 2191 12 195 271 157 0 chr6 44081269 44081339 -138333903 + MIR SINE MIR 73 153 -109 203 122 61 41 chr6 44081974 44082023 -138333219 + GA-rich Low_complexity Low_complexity 1 50 0 189 0 0 0 chr6 44082504 44082525 -138332717 + (CA)n Simple_repeat Simple_repeat 2 22 0 1546 163 33 18 chr6 44084500 44084776 -138330466 + AluJo SINE Alu 3 282 -30 386 295 78 33 chr6 44084856 44085100 -138330142 + L1MC/D LINE L1 3596 3850 -2296 314 276 166 31 chr6 44085132 44085295 -138329947 - L2 LINE L2 -576 2738 2554 469 327 58 16 chr6 44085357 44085614 -138329628 + L1MC/D LINE L1 5506 5773 -2035 400 267 48 0 chr6 44085616 44085721 -138329521 + MIR SINE MIR 140 249 -13 2388 71 0 0 chr6 44086085 44086402 -138328840 + AluY SINE Alu 1 317 0 251 327 148 40 chr6 44086431 44086532 -138328710 - MIR SINE MIR -64 144 33 719 302 114 60 chr6 44086543 44087295 -138327947 - L2 LINE L2 -6 3307 2514 617 225 22 0 chr6 44088236 44088374 -138326868 - L1MA10 LINE L1 -3 6331 6191 302 291 88 27 chr6 44088374 44088514 -138326728 - L1ME1 LINE L1 -146 6020 5869 717 267 91 63 chr6 44088741 44088911 -138326331 - L1ME4a LINE L1 -2 6119 5955 1815 146 115 44 chr6 44088911 44089246 -138325996 + MLT1B LTR MaLR 1 365 -25 432 0 0 0 chr6 44089246 44089294 -138325948 + (TG)n Simple_repeat Simple_repeat 2 49 0 1815 146 115 44 chr6 44089294 44089322 -138325920 + MLT1B LTR MaLR 365 390 0 717 267 91 63 chr6 44089322 44089347 -138325895 - L1ME4a LINE L1 -166 5955 5932 2369 90 0 0 chr6 44089347 44089648 -138325594 + AluY SINE Alu 1 301 -10 405 0 0 0 chr6 44089650 44089695 -138325547 + (TG)n Simple_repeat Simple_repeat 2 46 0 717 267 91 63 chr6 44089695 44089996 -138325246 - L1ME4a LINE L1 -189 5932 5600 2127 133 0 0 chr6 44089996 44090304 -138324938 - AluSx SINE Alu -4 308 1 717 267 91 63 chr6 44090304 44090353 -138324889 - L1ME4a LINE L1 -521 5600 5554 2002 134 10 3 chr6 44090354 44090646 -138324596 + AluSq SINE Alu 1 294 -19 2228 123 7 0 chr6 44090724 44091034 -138324208 - AluSx SINE Alu 0 312 1 890 156 0 8 chr6 44091087 44091215 -138324027 + FLAM_A SINE Alu 1 127 -6 21 0 0 0 chr6 44091244 44091265 -138323977 + AT_rich Low_complexity Low_complexity 1 21 0 453 349 30 47 chr6 44091452 44091856 -138323386 + L1M4 LINE L1 4878 5274 -872 1991 140 7 0 chr6 44091879 44092172 -138323070 + AluSx SINE Alu 1 295 -17 1811 153 20 7 chr6 44092258 44092559 -138322683 + AluJo SINE Alu 1 305 -7 22 0 0 0 chr6 44093265 44093287 -138321955 + AT_rich Low_complexity Low_complexity 1 22 0 356 220 43 78 chr6 44093378 44093519 -138321723 - L1M4 LINE L1 -1527 4619 4484 1514 152 3 108 chr6 44093770 44094105 -138321137 + MER45B DNA AcHobo 407 706 -334 2185 146 128 13 chr6 44094106 44094490 -138320752 + MSTA LTR MaLR 1 428 0 2665 167 9 2 chr6 44094504 44094960 -138320282 + MSTA-int LTR MaLR 14 472 -1179 2087 102 7 31 chr6 44094961 44095255 -138319987 + AluSx SINE Alu 1 287 -25 545 114 9 0 chr6 44095257 44095362 -138319880 + (CATAA)n Simple_repeat Simple_repeat 2 107 0 1744 155 41 26 chr6 44095574 44095916 -138319326 + THE1C LTR MaLR 1 347 -28 2095 148 0 0 chr6 44095936 44096234 -138319008 - AluSx SINE Alu -14 298 1 1273 105 0 6 chr6 44096243 44096414 -138318828 - AluSc SINE Alu -8 301 132 2175 116 0 7 chr6 44096414 44096717 -138318525 - AluSx SINE Alu -11 301 1 271 150 0 0 chr6 44096719 44096759 -138318483 + THE1C LTR MaLR 389 428 0 214 328 90 113 chr6 44096907 44096984 -138318258 + L2 LINE L2 2929 3006 -266 2757 90 13 19 chr6 44096984 44097360 -138317882 - THE1C LTR MaLR 0 375 2 214 328 90 113 chr6 44097360 44097627 -138317615 + L2 LINE L2 3006 3265 -7 327 260 160 50 chr6 44098425 44098625 -138316617 + LTR33A LTR ERVL 1 162 -361 1524 196 22 20 chr6 44098779 44099119 -138316123 - Tigger7 DNA MER2_type 0 2491 1 3436 236 71 77 chr6 44099509 44100046 -138315196 + L1MC5 LINE L1 5351 5890 -2071 512 221 107 25 chr6 44100046 44100168 -138315074 + FLAM_A SINE Alu 2 133 0 3436 236 71 77 chr6 44100168 44102182 -138313060 + L1MC5 LINE L1 5890 7893 -68 21 0 0 0 chr6 44102763 44102784 -138312458 + AT_rich Low_complexity Low_complexity 1 21 0 2307 109 0 0 chr6 44102935 44103239 -138312003 + AluSx SINE Alu 1 304 -8 28 29 0 0 chr6 44104371 44104406 -138310836 + AT_rich Low_complexity Low_complexity 1 35 0 2112 123 17 0 chr6 44108401 44108702 -138306540 + AluSx SINE Alu 1 306 -6 1696 150 79 0 chr6 44109602 44109869 -138305373 - AluJo SINE Alu -24 288 1 239 309 134 0 chr6 44109888 44109985 -138305257 + MIR SINE MIR 119 228 -34 1896 140 89 19 chr6 44110088 44110402 -138304840 + MER44D DNA MER2_type 4 609 0 2266 69 38 0 chr6 44112189 44112479 -138302763 - AluY SINE Alu -10 301 1 25 83 0 0 chr6 44112594 44112654 -138302588 + AT_rich Low_complexity Low_complexity 1 60 0 1956 176 0 0 chr6 44112776 44113077 -138302165 + AluJb SINE Alu 1 301 -11 185 369 27 45 chr6 44113209 44113320 -138301922 + MIR SINE MIR 30 138 -70 561 235 50 22 chr6 44113518 44113697 -138301545 - L2 LINE L2 -4 3309 3126 281 284 24 24 chr6 44114028 44114155 -138301087 + GA-rich Low_complexity Low_complexity 2 128 0 330 67 0 0 chr6 44115574 44115619 -138299623 + (GA)n Simple_repeat Simple_repeat 1 45 0 4043 239 102 71 chr6 44116384 44118163 -138297079 - HAL1 LINE L1 -643 1864 32 204 40 0 0 chr6 44118697 44118722 -138296520 + (TC)n Simple_repeat Simple_repeat 2 26 0 2790 3 0 0 chr6 44119451 44119752 -138295490 - AluYb8 SINE Alu -17 301 1 582 223 9 0 chr6 44119799 44119911 -138295331 - MER81 DNA DNA -1 113 1 492 196 176 14 chr6 44120839 44120987 -138294255 + MIR SINE MIR 79 250 -12 200 200 111 0 chr6 44120987 44121032 -138294210 + L2 LINE L2 3264 3313 0 187 301 48 48 chr6 44121036 44121119 -138294123 - L2 LINE L2 -4 3268 3186 279 305 71 59 chr6 44121214 44121453 -138293789 - L2 LINE L2 -185 3087 2846 362 306 71 0 chr6 44121751 44121849 -138293393 - MER5B DNA MER1_type 0 178 74 1674 164 20 24 chr6 44121943 44122236 -138293006 + AluJo SINE Alu 1 292 -20 2240 112 3 28 chr6 44122240 44122561 -138292681 + AluSp SINE Alu 1 313 0 305 357 60 71 chr6 44122766 44123116 -138292126 + L2 LINE L2 2927 3272 0 212 0 36 0 chr6 44123758 44123786 -138291456 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 797 182 14 7 chr6 44123788 44123936 -138291306 - FRAM SINE Alu -30 146 1 1459 150 29 82 chr6 44123962 44124268 -138290974 + AluJo SINE Alu 1 290 -22 23 0 0 0 chr6 44125765 44125788 -138289454 + AT_rich Low_complexity Low_complexity 1 23 0 856 249 28 19 chr6 44125800 44126013 -138289229 - MIR SINE MIR 0 262 48 1626 177 0 54 chr6 44126141 44126457 -138288785 + AluJo SINE Alu 1 299 -13 288 0 0 0 chr6 44128481 44128513 -138286729 + (A)n Simple_repeat Simple_repeat 1 32 0 707 180 72 20 chr6 44128771 44128993 -138286249 - MER106B DNA MER1_type 0 1059 1 2091 123 0 0 chr6 44129037 44129314 -138285928 - AluSg SINE Alu -33 277 1 670 304 143 25 chr6 44129475 44130001 -138285241 + L2 LINE L2 2164 2751 -563 237 103 0 0 chr6 44130262 44130301 -138284941 - MER101 LTR ERV1 -1 473 435 1788 152 14 4 chr6 44134224 44134501 -138280741 - AluJb SINE Alu -24 288 9 2128 126 7 0 chr6 44134670 44134964 -138280278 + AluSx SINE Alu 1 296 -16 387 60 0 0 chr6 44134965 44135015 -138280227 + (TA)n Simple_repeat Simple_repeat 1 50 0 258 211 0 0 chr6 44135180 44135232 -138280010 - AluJ/monomer SINE Alu -254 54 3 707 33 0 11 chr6 44136560 44136651 -138278591 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 202 289 0 0 chr6 44138243 44138295 -138276947 + (CA)n Simple_repeat Simple_repeat 2 53 0 282 54 0 0 chr6 44138625 44138662 -138276580 - MER61C LTR ERV1 0 434 398 * 368 118 26 40 chr6 44138641 44138717 -138276525 + MER61C LTR ERV1 314 388 -46 232 57 0 0 chr6 44138746 44138781 -138276461 - MER61B LTR ERV1 -243 182 148 263 67 0 44 chr6 44138787 44138832 -138276410 - MER61C LTR ERV1 -391 43 1 2084 126 31 0 chr6 44138922 44139216 -138276026 - AluSx SINE Alu -9 303 1 2342 114 0 0 chr6 44139273 44139579 -138275663 + AluSx SINE Alu 1 306 -6 343 118 0 0 chr6 44139654 44139705 -138275537 + MER94 DNA DNA 1 51 -83 324 276 43 68 chr6 44139761 44139924 -138275318 + L1MEd LINE L1 722 880 -5754 1099 256 159 48 chr6 44140088 44140830 -138274412 + HAL1 LINE L1 1684 2507 0 266 281 41 29 chr6 44140903 44141074 -138274168 + L1MEd LINE L1 2067 2239 -4586 1683 174 0 48 chr6 44141229 44141545 -138273697 + AluJo SINE Alu 1 301 -11 1037 253 75 68 chr6 44141830 44142653 -138272589 + L1MEd LINE L1 2647 3475 -3169 601 318 83 35 chr6 44142649 44143048 -138272194 + L1MEd LINE L1 1 418 -6124 * 645 124 48 0 chr6 44143123 44143228 -138272014 + AluJb SINE Alu 203 312 0 1554 281 84 18 chr6 44143240 44144177 -138271065 + L1MEd LINE L1 3616 4614 -2030 356 278 39 19 chr6 44144172 44144377 -138270865 + L1MEd LINE L1 4819 5027 -1617 * 337 160 80 90 chr6 44144475 44144575 -138270667 + MLT1A2 LTR MaLR 1 99 -275 2244 108 7 0 chr6 44145875 44146171 -138269071 - AluSx SINE Alu -14 298 1 2162 112 14 10 chr6 44146476 44146771 -138268471 - AluSx SINE Alu -12 300 5 1676 186 3 26 chr6 44147312 44147624 -138267618 - AluJb SINE Alu -7 305 1 2323 86 0 0 chr6 44147936 44148226 -138267016 + AluSq SINE Alu 1 290 -23 22 0 0 0 chr6 44148243 44148265 -138266977 + AT_rich Low_complexity Low_complexity 1 22 0 1443 121 0 0 chr6 44150876 44151066 -138264176 - AluSq SINE Alu -123 190 1 497 319 47 34 chr6 44153174 44153409 -138261833 - MIR SINE MIR -5 257 20 23 0 0 0 chr6 44153514 44153537 -138261705 + AT_rich Low_complexity Low_complexity 1 23 0 2175 107 0 60 chr6 44153557 44153875 -138261367 - AluSx SINE Alu -13 299 1 310 325 44 9 chr6 44154576 44154690 -138260552 - L2 LINE L2 -17 3296 3179 205 161 0 0 chr6 44154700 44154731 -138260511 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 592 327 36 36 chr6 44154741 44154989 -138260253 - L2 LINE L2 0 3272 3025 209 348 18 92 chr6 44155002 44155166 -138260076 - L2 LINE L2 -210 3062 2911 1249 270 61 23 chr6 44155206 44155599 -138259643 + MLT1F LTR MaLR 2 409 -133 861 96 26 32 chr6 44155674 44155830 -138259412 + MLT1A1 LTR MaLR 5 159 -206 1355 197 12 36 chr6 44155830 44156079 -138259163 + AluJb SINE Alu 1 243 -69 1092 166 11 13 chr6 44156097 44156388 -138258854 + MLT1A1 LTR MaLR 144 485 -57 2373 89 0 3 chr6 44156388 44156690 -138258552 - AluSg SINE Alu -9 301 1 1092 166 11 13 chr6 44156690 44156748 -138258494 + MLT1A1 LTR MaLR 485 542 0 244 335 53 53 chr6 44156763 44156990 -138258252 - L2 LINE L2 -460 2854 2628 1102 170 77 55 chr6 44157345 44157573 -138257669 + MER33 DNA MER1_type 7 245 -2340 2260 121 0 0 chr6 44157573 44157878 -138257364 - AluSx SINE Alu -2 310 6 1102 170 77 55 chr6 44157878 44157960 -138257282 + MER33 DNA MER1_type 245 324 0 211 340 169 30 chr6 44158021 44158394 -138256848 - L2 LINE L2 -742 2572 2148 330 348 52 32 chr6 44158547 44158797 -138256445 - L2 LINE L2 -343 2971 2717 28 29 0 0 chr6 44159481 44159516 -138255726 + AT_rich Low_complexity Low_complexity 1 35 0 600 228 6 48 chr6 44160247 44160414 -138254828 + MLT1J LTR MaLR 1 160 -351 2284 95 0 43 chr6 44160416 44160743 -138254499 - AluSp SINE Alu 0 313 1 274 351 119 35 chr6 44160775 44161322 -138253920 + L2 LINE L2 1518 2110 -1204 24 32 0 0 chr6 44161469 44161500 -138253742 + AT_rich Low_complexity Low_complexity 1 31 0 1962 108 62 49 chr6 44161755 44162125 -138253117 + THE1C LTR MaLR 1 375 0 524 248 243 29 chr6 44162374 44162584 -138252658 + MIR SINE MIR 4 258 -4 3280 180 56 10 chr6 44162691 44163473 -138251769 + L1MB7 LINE L1 4299 5116 -1030 1445 177 33 19 chr6 44163477 44163748 -138251494 + AluJo SINE Alu 11 285 -27 293 241 0 11 chr6 44163751 44163838 -138251404 + GA-rich Low_complexity Low_complexity 5 90 0 653 162 72 72 chr6 44163842 44164064 -138251178 + L1MB7 LINE L1 5107 5328 -818 4283 160 32 12 chr6 44164065 44164920 -138250322 + L1MB7 LINE L1 5294 6165 -19 925 178 0 0 chr6 44167431 44167583 -138247659 - FAM SINE Alu -33 152 1 185 321 57 47 chr6 44167598 44167704 -138247538 - MIR SINE MIR -144 118 12 1818 148 22 4 chr6 44168756 44169034 -138246208 + AluJo SINE Alu 1 312 0 189 35 35 0 chr6 44169034 44169063 -138246179 + (CAAAA)n Simple_repeat Simple_repeat 3 175 0 2039 135 0 0 chr6 44169649 44169945 -138245297 + AluSx SINE Alu 1 296 -16 2094 130 0 0 chr6 44170224 44170542 -138244700 + AluY SINE Alu 1 318 0 1837 160 10 16 chr6 44170872 44171184 -138244058 + AluJb SINE Alu 3 312 0 989 130 0 20 chr6 44171427 44171573 -138243669 + FLAM_C SINE Alu 1 143 0 250 321 38 38 chr6 44171580 44171739 -138243503 + L2 LINE L2 2198 2356 -958 360 294 122 32 chr6 44171787 44172188 -138243054 + L1MC/D LINE L1 4516 4952 -1194 21 36 0 0 chr6 44172295 44172323 -138242919 + AT_rich Low_complexity Low_complexity 1 28 0 1461 203 41 4 chr6 44172336 44172607 -138242635 + AluSx SINE Alu 2 282 -30 228 160 0 0 chr6 44172620 44172670 -138242572 - L1MC4 LINE L1 -1339 6703 6654 29 0 0 0 chr6 44172680 44172709 -138242533 + AT_rich Low_complexity Low_complexity 1 29 0 304 289 46 20 chr6 44172735 44172887 -138242355 + L1MC/D LINE L1 5078 5233 -913 480 254 171 20 chr6 44172905 44173157 -138242085 + L1MC/D LINE L1 5255 5544 -2264 2012 134 0 7 chr6 44173258 44173568 -138241674 + AluSg SINE Alu 1 308 0 192 77 0 0 chr6 44173790 44173816 -138241426 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 384 293 29 14 chr6 44174009 44174149 -138241093 - Charlie8 DNA MER1_type -2225 192 51 239 386 36 14 chr6 44174190 44174330 -138240912 - L3 LINE CR1 -389 1188 1046 414 306 44 11 chr6 44174485 44174668 -138240574 + MIR SINE MIR 45 233 -29 304 342 0 36 chr6 44175025 44175136 -138240106 - L3 LINE CR1 -1442 135 29 341 334 86 51 chr6 44175383 44175778 -138239464 + L2 LINE L2 2018 2426 -888 2156 160 108 43 chr6 44175814 44176284 -138238958 + MLT1D LTR MaLR 5 505 0 2274 75 0 33 chr6 44177019 44177325 -138237917 - AluY SINE Alu -15 296 1 1571 165 25 48 chr6 44177606 44177921 -138237321 - AluJo SINE Alu 0 312 5 345 269 54 54 chr6 44178087 44178179 -138237063 + L2 LINE L2 3184 3278 -35 1827 164 3 0 chr6 44178179 44178457 -138236785 + AluJb SINE Alu 7 288 -24 234 0 0 0 chr6 44178457 44178483 -138236759 + (GA)n Simple_repeat Simple_repeat 1 26 0 345 269 54 54 chr6 44178490 44178527 -138236715 + L2 LINE L2 3277 3313 0 738 220 17 22 chr6 44179264 44179497 -138235745 - MER106B DNA MER1_type 0 1059 1 783 147 31 23 chr6 44179511 44179640 -138235602 + FLAM_A SINE Alu 2 131 -2 431 167 198 8 chr6 44179969 44180095 -138235147 + L1MB8 LINE L1 6029 6178 0 2291 97 3 0 chr6 44180270 44180569 -138234673 + AluSp SINE Alu 1 300 -13 2173 117 0 0 chr6 44181257 44181539 -138233703 + AluSc SINE Alu 1 282 -27 1962 151 13 10 chr6 44181770 44182081 -138233161 + AluSx SINE Alu 1 312 0 230 159 0 0 chr6 44182858 44182902 -138232340 + MER20B DNA MER1_type 615 658 -125 618 140 27 33 chr6 44183123 44183273 -138231969 + MER20B DNA MER1_type 635 783 0 495 152 0 13 chr6 44183513 44183592 -138231650 + AluJ/FLAM SINE Alu 1 78 -234 1682 84 4 0 chr6 44233599 44233837 -138181405 + MER11A LTR ERVK 1028 1266 0 7127 100 59 15 chr6 44233837 44235071 -138180171 + L1M1 LINE L1 2111 3399 -4166 5683 170 51 9 chr6 44235084 44236170 -138179072 + L1MA3 LINE L1 16 1146 -6419 * 14767 146 37 15 chr6 44236169 44240345 -138174897 + L1MA3 LINE L1 3450 7724 0 433 262 32 8 chr6 44240949 44241075 -138174167 + MLT1J LTR MaLR 71 199 -312 1518 171 4 47 chr6 44241865 44241990 -138173252 - AluJo SINE Alu -50 262 133 1524 173 0 70 chr6 44241990 44242302 -138172940 - AluJb SINE Alu 0 312 23 1518 171 4 47 chr6 44242302 44242450 -138172792 - AluJo SINE Alu -179 133 1 267 271 131 9 chr6 44244467 44244574 -138170668 + L2 LINE L2 3189 3308 -5 2227 81 0 3 chr6 44244675 44244958 -138170284 + AluSc SINE Alu 1 282 -27 661 274 39 74 chr6 44245304 44245738 -138169504 + L2 LINE L2 2169 2587 -727 401 309 23 17 chr6 44245837 44246012 -138169230 + Charlie8 DNA MER1_type 78 253 -2164 641 271 115 66 chr6 44246157 44246694 -138168548 + L2 LINE L2 2700 3308 -5 933 181 60 219 chr6 44246823 44246895 -138168347 - L2 LINE L2 0 3313 3231 2586 41 0 0 chr6 44246895 44247190 -138168052 + AluY SINE Alu 2 296 -15 933 181 60 219 chr6 44247190 44247262 -138167980 - L2 LINE L2 -82 3231 3149 1214 172 182 27 chr6 44247262 44247558 -138167684 - MER2 DNA MER2_type -1 343 2 933 181 60 219 chr6 44247558 44247863 -138167379 - L2 LINE L2 -164 3149 2797 2477 93 0 0 chr6 44247863 44248175 -138167067 + AluSq SINE Alu 1 312 -1 933 181 60 219 chr6 44248175 44248304 -138166938 - L2 LINE L2 -516 2797 2649 1640 138 4 0 chr6 44248304 44248550 -138166692 - AluSx SINE Alu -6 306 60 933 181 60 219 chr6 44248550 44248611 -138166631 - L2 LINE L2 -664 2649 2580 492 183 4 0 chr6 44248611 44248716 -138166526 + L1MB7 LINE L1 6037 6142 -42 2590 59 0 0 chr6 44248716 44249020 -138166222 + AluY SINE Alu 1 304 -7 933 181 60 219 chr6 44249020 44249056 -138166186 - L2 LINE L2 -732 2581 2541 555 16 0 0 chr6 44249056 44249120 -138166122 + (CA)n Simple_repeat Simple_repeat 2 65 0 933 181 60 219 chr6 44249120 44249359 -138165883 - L2 LINE L2 -772 2541 2446 290 293 46 11 chr6 44249410 44249565 -138165677 + MLT1L LTR MaLR 239 496 -117 2405 175 8 29 chr6 44249668 44249878 -138165364 + Tigger1 DNA MER2_type 1 214 -2204 2147 134 7 0 chr6 44249878 44250185 -138165057 - AluSx SINE Alu -3 309 1 2405 175 8 29 chr6 44250185 44250454 -138164788 + Tigger1 DNA MER2_type 214 470 -1948 1480 144 0 5 chr6 44250454 44250669 -138164573 + AluJb SINE Alu 90 303 -9 560 290 115 103 chr6 44250750 44251167 -138164075 + L2 LINE L2 2851 3272 0 219 275 62 0 chr6 44252495 44252575 -138162667 + MIR SINE MIR 174 258 -4 2638 242 234 12 chr6 44252909 44253523 -138161719 + L2 LINE L2 1741 2218 -1095 2374 103 0 0 chr6 44253523 44253834 -138161408 - AluY SINE Alu 0 311 1 2638 242 234 12 chr6 44253834 44254356 -138160886 + L2 LINE L2 2218 3124 -189 847 246 35 47 chr6 44254660 44254916 -138160326 - MIR SINE MIR -8 254 2 1834 106 98 0 chr6 44255716 44255991 -138159251 + AluSq SINE Alu 1 302 -11 898 102 12 203 chr6 44256076 44256332 -138158910 + MER2 DNA MER2_type 4 210 -135 242 220 0 0 chr6 44256373 44256423 -138158819 + MER2 DNA MER2_type 268 317 -28 1033 144 25 12 chr6 44256927 44257087 -138158155 + FRAM SINE Alu 1 160 -16 405 0 0 0 chr6 44259725 44259770 -138155472 + (TG)n Simple_repeat Simple_repeat 1 45 0 234 0 0 0 chr6 44259769 44259795 -138155447 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2394 81 13 7 chr6 44259953 44260263 -138154979 + AluSx SINE Alu 1 312 0 1887 118 10 34 chr6 44260276 44260593 -138154649 + AluSq SINE Alu 1 313 0 388 268 115 38 chr6 44260596 44260753 -138154489 + MIR SINE MIR 31 199 -63 315 288 159 15 chr6 44261062 44261194 -138154048 + MIR SINE MIR 26 176 -86 1451 215 21 14 chr6 44261206 44261490 -138153752 + AluJo SINE Alu 11 296 -16 3638 206 20 42 chr6 44261492 44262445 -138152797 - L1PA16 LINE L1 -1871 4275 3344 * 4711 178 22 8 chr6 44262439 44263615 -138151627 + L1PA16 LINE L1 4290 5476 -690 4387 128 3 14 chr6 44263791 44264492 -138150750 - L1PA15 LINE L1 -1 6164 5472 4336 108 50 1 chr6 44264492 44265158 -138150084 + L1PA16 LINE L1 5460 6157 -9 292 295 147 32 chr6 44265471 44265661 -138149581 + L2 LINE L2 1614 1825 -1489 361 247 152 19 chr6 44265938 44266096 -138149146 - L1MC/D LINE L1 -2042 5766 5588 654 288 264 45 chr6 44266108 44266995 -138148247 + L2 LINE L2 1826 2518 -754 2498 66 0 3 chr6 44266995 44267300 -138147942 - AluY SINE Alu -7 304 1 654 288 264 45 chr6 44267300 44267608 -138147634 + L2 LINE L2 2518 3270 -2 2382 96 0 13 chr6 44267825 44268139 -138147103 + AluY SINE Alu 1 310 -1 1213 160 68 5 chr6 44268454 44268660 -138146582 - MER20 DNA MER1_type 0 219 1 333 254 147 18 chr6 44268787 44269166 -138146076 + L1ME4a LINE L1 5389 5825 -347 684 69 50 0 chr6 44269168 44269269 -138145973 + HY1 scRNA scRNA 1 106 -6 23 33 0 0 chr6 44269269 44269299 -138145943 + AT_rich Low_complexity Low_complexity 1 30 0 344 339 34 8 chr6 44272431 44272549 -138142693 + L2 LINE L2 3149 3269 -3 352 338 150 0 chr6 44273594 44273727 -138141515 + MIR SINE MIR 102 254 -8 1747 185 6 10 chr6 44274895 44275193 -138140049 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr6 44275193 44275215 -138140027 + (CA)n Simple_repeat Simple_repeat 1 22 0 1747 185 6 10 chr6 44275215 44275229 -138140013 + AluSx SINE Alu 299 312 0 550 290 147 21 chr6 44275250 44275529 -138139713 + L2 LINE L2 3000 3313 0 339 269 91 69 chr6 44275918 44276384 -138138858 + L1ME LINE L1 4958 5428 -751 237 264 66 33 chr6 44276444 44276535 -138138707 + L1ME LINE L1 5496 5589 -532 358 304 129 32 chr6 44277093 44277310 -138137932 + L3b LINE CR1 1102 1339 -244 410 279 32 26 chr6 44277801 44277955 -138137287 - MIR SINE MIR 0 262 108 274 284 30 52 chr6 44278490 44278624 -138136618 - L2 LINE L2 -16 3297 3167 288 341 85 23 chr6 44281117 44281246 -138133996 + L2 LINE L2 3121 3257 -15 258 167 21 0 chr6 44282154 44282202 -138133040 + MIR SINE MIR 184 232 -30 305 218 69 10 chr6 44283152 44283253 -138131989 + L1ME4a LINE L1 6014 6120 -1 951 109 0 14 chr6 44283832 44283970 -138131272 + FLAM_C SINE Alu 1 136 -7 2176 108 3 0 chr6 44284129 44284424 -138130818 + AluSq SINE Alu 1 296 -17 258 314 134 23 chr6 44284870 44285042 -138130200 + MIR SINE MIR 18 208 -54 971 214 9 49 chr6 44285538 44285762 -138129480 - MIR SINE MIR -31 231 17 226 282 137 34 chr6 44285928 44286045 -138129197 + MIR SINE MIR 58 186 -76 396 305 13 32 chr6 44286111 44286265 -138128977 - L2 LINE L2 -4 3309 3159 2117 125 3 10 chr6 44286434 44286738 -138128504 + AluSx SINE Alu 1 302 -10 1952 166 0 3 chr6 44287263 44287553 -138127689 + AluSx SINE Alu 1 289 -23 261 278 14 28 chr6 44288160 44288232 -138127010 + MIR SINE MIR 34 104 -104 22 0 0 0 chr6 44288264 44288286 -138126956 + AT_rich Low_complexity Low_complexity 1 22 0 1772 183 6 10 chr6 44288517 44288828 -138126414 - AluJo SINE Alu -2 310 1 375 23 0 0 chr6 44289157 44289201 -138126041 + (CA)n Simple_repeat Simple_repeat 1 44 0 2278 118 0 0 chr6 44289999 44290304 -138124938 + AluSq SINE Alu 1 305 -8 337 337 60 42 chr6 44293284 44293450 -138121792 - L2 LINE L2 0 3272 3104 248 333 30 30 chr6 44293587 44293686 -138121556 - MIR SINE MIR -155 107 9 190 313 30 30 chr6 44293715 44293814 -138121428 - L2 LINE L2 -1045 2269 2171 492 184 57 7 chr6 44293935 44294076 -138121166 + MER104 DNA Tc2 33 180 0 231 278 75 83 chr6 44294079 44294345 -138120897 + L2 LINE L2 2475 2738 -576 901 220 106 4 chr6 44294762 44294998 -138120244 + MIR SINE MIR 2 261 -1 2291 84 14 0 chr6 44295121 44295417 -138119825 + AluSq SINE Alu 1 300 -13 586 315 114 10 chr6 44297921 44298315 -138116927 + L1MC4a LINE L1 5431 5865 -1943 248 237 35 26 chr6 44298719 44298833 -138116409 + GA-rich Low_complexity Low_complexity 5 119 0 2532 47 0 3 chr6 44299737 44300036 -138115206 + AluY SINE Alu 1 298 -13 2297 83 3 0 chr6 44301854 44302144 -138113098 + AluSp SINE Alu 1 291 -22 979 160 0 0 chr6 44302529 44302673 -138112569 - FRAM SINE Alu -37 139 1 630 284 62 5 chr6 44303360 44303571 -138111671 - MER58A DNA MER1_type -1 223 1 21 0 0 0 chr6 44303853 44303874 -138111368 + AT_rich Low_complexity Low_complexity 1 21 0 577 258 33 60 chr6 44304215 44304397 -138110845 - MER5B DNA MER1_type -1 177 1 1706 156 80 3 chr6 44304644 44304932 -138110310 + AluJo SINE Alu 1 310 -2 470 339 104 9 chr6 44304955 44305300 -138109942 + L1MC4a LINE L1 4180 4557 -1589 420 100 0 0 chr6 44305300 44305360 -138109882 + Tigger5 DNA MER2_type 2262 2321 -2 347 281 34 16 chr6 44305465 44305718 -138109524 + L1MC4a LINE L1 5669 5819 -302 343 377 48 24 chr6 44307668 44307835 -138107407 - L2 LINE L2 -4 3268 3098 805 245 52 92 chr6 44307994 44308097 -138107145 + Charlie7 DNA MER1_type 3 109 -2503 666 197 51 0 chr6 44308097 44308214 -138107028 - FLAM_A SINE Alu -9 124 2 805 245 52 92 chr6 44308214 44308267 -138106975 + Charlie7 DNA MER1_type 109 163 -2449 2272 114 0 3 chr6 44308267 44308566 -138106676 - AluSx SINE Alu -14 298 1 805 245 52 92 chr6 44308566 44308832 -138106410 + Charlie7 DNA MER1_type 163 409 -2203 1189 116 35 60 chr6 44308834 44309033 -138106209 + AluJo SINE Alu 86 279 -33 1834 163 77 21 chr6 44309033 44309561 -138105681 + MLT2A2 LTR ERVL 2 554 0 350 207 11 0 chr6 44309578 44309665 -138105577 + Charlie7 DNA MER1_type 399 486 -2126 717 253 25 15 chr6 44309913 44310115 -138105127 - MIR SINE MIR 0 262 59 225 135 27 0 chr6 44310869 44310906 -138104336 - L1MD3 LINE L1 -1131 6864 6827 1240 161 0 24 chr6 44312386 44312597 -138102645 + AluJb SINE Alu 86 291 -21 418 282 215 25 chr6 44313957 44314241 -138101001 + L1MC4a LINE L1 5506 5843 -1965 206 238 0 0 chr6 44314330 44314372 -138100870 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 182 303 158 0 chr6 44315625 44315701 -138099541 + L2 LINE L2 254 341 -2973 1047 201 69 50 chr6 44316172 44316490 -138098752 + MER33 DNA MER1_type 1 324 0 1650 136 70 0 chr6 44316558 44316816 -138098426 + AluSx SINE Alu 1 276 -36 343 255 20 20 chr6 44317046 44317144 -138098098 + MIR3 SINE MIR 96 193 -15 284 273 53 141 chr6 44317346 44317650 -138097592 + L2 LINE L2 2959 3235 -37 723 288 109 67 chr6 44317692 44318446 -138096796 + L2 LINE L2 2254 3082 -190 797 261 234 15 chr6 44318480 44319018 -138096224 + L2 LINE L2 2630 3291 -22 1343 247 147 5 chr6 44319118 44319555 -138095687 + MLT1E LTR MaLR 1 499 -94 447 142 50 33 chr6 44319566 44319686 -138095556 - MER20B DNA MER1_type -1 782 661 274 152 0 22 chr6 44319701 44319747 -138095495 + FLAM_A SINE Alu 13 57 -75 684 179 231 13 chr6 44319747 44319981 -138095261 + LTR12 LTR ERV1 1 285 -429 324 147 0 40 chr6 44319982 44320057 -138095185 + LTR30 LTR ERV1 553 624 -98 604 131 107 95 chr6 44320057 44320215 -138095027 + LTR12 LTR ERV1 301 483 -231 * 32035 107 9 12 chr6 44320189 44325750 -138089492 + HERV9 LTR ERV1 54 5673 -2726 10626 100 25 9 chr6 44325751 44327254 -138087988 + HERV9 LTR ERV1 6872 8399 0 1067 132 230 163 chr6 44327254 44327702 -138087540 + LTR12 LTR ERV1 1 478 -236 463 164 0 14 chr6 44327703 44327776 -138087466 + FLAM_A SINE Alu 53 124 -19 284 132 0 0 chr6 44327782 44327820 -138087422 + U2 snRNA snRNA 1 38 -150 183 80 0 0 chr6 44327821 44327846 -138087396 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 27 29 0 0 chr6 44327929 44327963 -138087279 + AT_rich Low_complexity Low_complexity 1 34 0 268 218 242 16 chr6 44328863 44328987 -138086255 - MIR3 SINE MIR -3 205 54 232 222 202 10 chr6 44329005 44329104 -138086138 + MIR SINE MIR 119 236 -26 1946 72 57 8 chr6 44329385 44329632 -138085610 - L1MA2 LINE L1 -1 6303 6041 204 40 0 0 chr6 44329632 44329657 -138085585 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1946 72 57 8 chr6 44329657 44329674 -138085568 - L1MA2 LINE L1 -263 6041 6026 183 333 117 18 chr6 44329675 44329786 -138085456 + L2 LINE L2 3149 3270 -2 274 227 76 0 chr6 44330570 44330636 -138084606 + L1MC4a LINE L1 5837 5907 -1901 311 267 12 0 chr6 44330717 44330803 -138084439 + L2 LINE L2 3182 3268 -45 428 307 86 0 chr6 44331124 44331287 -138083955 + L1ME LINE L1 5543 5719 -443 402 168 112 96 chr6 44331304 44331429 -138083813 + L1MC4a LINE L1 6052 6178 -1630 5608 205 83 65 chr6 44331433 44332760 -138082482 + L1MC4 LINE L1 6200 7502 -540 2335 107 7 0 chr6 44332760 44333070 -138082172 + AluSq SINE Alu 1 312 -1 5608 205 83 65 chr6 44333070 44333144 -138082098 + L1MC4 LINE L1 7502 7573 -469 2225 84 29 26 chr6 44333144 44333455 -138081787 + AluSq SINE Alu 1 312 -1 5608 205 83 65 chr6 44333455 44333863 -138081379 + L1MC4 LINE L1 7573 8042 0 2606 164 71 34 chr6 44334564 44334904 -138080338 + MLT1F1 LTR MaLR 3 329 -238 198 0 0 0 chr6 44334904 44334926 -138080316 + (CCCCAG)n Simple_repeat Simple_repeat 3 24 0 2606 164 71 34 chr6 44334926 44335065 -138080177 + MLT1F1 LTR MaLR 329 507 -60 2365 75 3 0 chr6 44335065 44335357 -138079885 + AluSp SINE Alu 1 293 -20 2606 164 71 34 chr6 44335357 44335414 -138079828 + MLT1F1 LTR MaLR 507 560 -7 1666 170 10 29 chr6 44335868 44336179 -138079063 + AluJo SINE Alu 1 305 -7 269 310 53 54 chr6 44336461 44336669 -138078573 + MIR3 SINE MIR 10 221 -41 237 324 0 40 chr6 44337245 44337319 -138077923 + L2 LINE L2 3200 3270 -2 761 158 8 8 chr6 44338214 44338347 -138076895 + MER5A DNA MER1_type 21 153 -36 2293 125 0 0 chr6 44338350 44338654 -138076588 - AluSx SINE Alu -8 304 1 1405 175 145 10 chr6 44338693 44339019 -138076223 + MSTD LTR MaLR 1 404 -24 421 249 118 70 chr6 44339267 44339496 -138075746 - MIR SINE MIR -16 246 7 224 342 102 35 chr6 44339556 44339869 -138075373 + L2 LINE L2 2252 2585 -729 471 175 289 0 chr6 44340049 44340163 -138075079 + MSTD LTR MaLR 82 228 -168 309 327 106 75 chr6 44340219 44340540 -138074702 + L2 LINE L2 2934 3264 -8 315 296 43 26 chr6 44341675 44341790 -138073452 - L2 LINE L2 -12 3301 3185 21 49 0 49 chr6 44342911 44342972 -138072270 + GC_rich Low_complexity Low_complexity 1 58 0 238 290 0 32 chr6 44343088 44343212 -138072030 + (CCG)n Simple_repeat Simple_repeat 3 122 0 221 206 33 65 chr6 44343621 44343713 -138071529 + MIR SINE MIR 119 207 -55 1871 132 0 7 chr6 44343744 44344025 -138071217 + AluJb SINE Alu 11 289 -23 314 360 40 17 chr6 44344215 44344390 -138070852 - L2 LINE L2 -638 2676 2498 2097 153 162 59 chr6 44344952 44345410 -138069832 + MLT1D LTR MaLR 1 505 0 906 333 48 15 chr6 44345532 44345986 -138069256 - L2 LINE L2 -995 2319 1851 378 339 51 8 chr6 44346045 44346163 -138069079 + MIR3 SINE MIR 34 156 -52 687 147 9 0 chr6 44346243 44346352 -138068890 - AluJb SINE Alu -3 309 200 2173 120 3 13 chr6 44346582 44346898 -138068344 + AluSp SINE Alu 1 313 0 1543 150 0 85 chr6 44346924 44347218 -138068024 + AluJo SINE Alu 9 277 -35 204 278 196 30 chr6 44347673 44347806 -138067436 - MIR SINE MIR -60 202 48 * 218 297 14 14 chr6 44347798 44347872 -138067370 + L2 LINE L2 3011 3084 -188 703 282 33 14 chr6 44347972 44348185 -138067057 - MIR SINE MIR -44 218 2 243 143 16 16 chr6 44348497 44348560 -138066682 + L1ME4a LINE L1 6059 6121 0 250 214 36 0 chr6 44349268 44349324 -138065918 - Charlie8 DNA MER1_type -2207 210 153 3695 144 55 10 chr6 44349847 44350463 -138064779 - LTR48B LTR ERV1 0 644 1 2030 119 3 17 chr6 44350768 44351061 -138064181 - AluSg SINE Alu -21 289 1 2260 116 3 3 chr6 44351221 44351531 -138063711 + AluSx SINE Alu 1 310 -2 254 244 221 0 chr6 44352253 44352339 -138062903 - L2 LINE L2 -18 3254 3150 876 206 136 0 chr6 44352341 44352446 -138062796 - MER3 DNA MER1_type 0 209 120 1668 174 37 0 chr6 44352446 44352568 -138062674 + AluJo SINE Alu 1 117 -195 216 0 0 0 chr6 44352568 44352592 -138062650 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1668 174 37 0 chr6 44352592 44352763 -138062479 + AluJo SINE Alu 117 305 -7 876 206 136 0 chr6 44352763 44352841 -138062401 - MER3 DNA MER1_type -89 120 1 372 246 179 8 chr6 44352913 44353047 -138062195 - MER5A DNA MER1_type -18 171 15 249 75 125 0 chr6 44353292 44353332 -138061910 - MLT1I LTR MaLR -7 402 358 407 233 132 37 chr6 44353352 44353541 -138061701 - MLT1I LTR MaLR -201 208 2 1891 152 0 20 chr6 44353799 44354096 -138061146 - AluJo SINE Alu -21 291 1 246 32 0 0 chr6 44354370 44354401 -138060841 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 542 235 138 19 chr6 44354530 44354815 -138060427 + MLT1I LTR MaLR 63 407 -2 344 294 62 62 chr6 44354921 44354961 -138060281 + L1M4 LINE L1 2397 2436 -3710 2271 100 0 0 chr6 44354961 44355251 -138059991 + AluSp SINE Alu 1 290 -23 344 294 62 62 chr6 44355251 44355659 -138059583 + L1M4 LINE L1 2435 2845 -3301 963 93 43 0 chr6 44355699 44355838 -138059404 - L1PA14 LINE L1 0 6161 6017 2112 97 7 37 chr6 44355945 44356244 -138058998 + AluSx SINE Alu 1 290 -22 2436 82 0 3 chr6 44356314 44356618 -138058624 + AluSx SINE Alu 1 303 -9 317 191 53 32 chr6 44356657 44356751 -138058491 - MLT1I LTR MaLR 0 409 314 264 209 9 86 chr6 44356881 44356986 -138058256 + L2 LINE L2 2807 2903 -411 239 70 18 211 chr6 44357000 44357057 -138058185 - Alu SINE Alu -151 150 105 853 252 88 19 chr6 44357059 44357377 -138057865 + L2 LINE L2 2969 3308 -5 320 270 87 0 chr6 44357381 44357496 -138057746 + L1ME3A LINE L1 5435 5559 -2249 1238 249 4 8 chr6 44357513 44357972 -138057270 + MLT1J LTR MaLR 6 509 -2 517 243 38 117 chr6 44357972 44358089 -138057153 + L1ME3A LINE L1 5561 5686 -484 2418 84 3 7 chr6 44358089 44358398 -138056844 + AluSp SINE Alu 1 308 -5 517 243 38 117 chr6 44358398 44358477 -138056765 + L1ME3A LINE L1 5686 5725 -445 2355 87 7 0 chr6 44358477 44358776 -138056466 + AluSx SINE Alu 1 301 -11 517 243 38 117 chr6 44358776 44358895 -138056347 + L1ME3A LINE L1 5725 5852 -318 1836 171 0 7 chr6 44359004 44359309 -138055933 + AluJb SINE Alu 1 303 -9 2070 129 0 3 chr6 44359348 44359634 -138055608 - AluSx SINE Alu -23 289 5 552 202 153 0 chr6 44359648 44359772 -138055470 - L1ME3A LINE L1 -8 6162 6020 1846 189 0 3 chr6 44359782 44360094 -138055148 - AluJb SINE Alu -1 311 1 501 277 58 41 chr6 44360215 44360457 -138054785 + MLT1L LTR MaLR 370 615 0 344 237 17 68 chr6 44360617 44360735 -138054507 - MIR SINE MIR -24 238 127 954 144 108 85 chr6 44360793 44360961 -138054281 + MER33 DNA MER1_type 11 174 -2411 2187 123 3 0 chr6 44360961 44361263 -138053979 - AluSx SINE Alu -9 303 1 954 144 108 85 chr6 44361263 44361309 -138053933 + MER33 DNA MER1_type 174 217 -2368 1618 191 3 20 chr6 44361309 44361613 -138053629 - AluJo SINE Alu -13 299 1 954 144 108 85 chr6 44361613 44361703 -138053539 + MER33 DNA MER1_type 217 323 -1 708 156 23 104 chr6 44361714 44361887 -138053355 + MER5A DNA MER1_type 3 161 -28 1117 169 133 28 chr6 44361911 44362166 -138053076 - L1MB8 LINE L1 -37 6141 5860 22 0 0 0 chr6 44362412 44362434 -138052808 + AT_rich Low_complexity Low_complexity 1 22 0 200 300 30 60 chr6 44362491 44362591 -138052651 - L2 LINE L2 -1091 2223 2127 267 238 69 0 chr6 44362813 44362914 -138052328 - L2 LINE L2 -1216 2098 1991 569 235 163 41 chr6 44363130 44363326 -138051916 - L1ME3A LINE L1 -8 6162 5943 4485 287 77 25 chr6 44363327 44364998 -138050244 + HERVL LTR ERVL 1161 2918 -2078 2019 156 0 0 chr6 44365000 44365302 -138049940 + AluJb SINE Alu 1 302 -10 388 283 20 16 chr6 44365320 44365436 -138049806 + HERVL LTR ERVL 2988 3088 -1908 1497 323 58 34 chr6 44365567 44365908 -138049334 - ERVL LTR ERVL -851 4913 4582 611 100 0 0 chr6 44365908 44365988 -138049254 - MADE1 DNA Mariner 0 80 1 1497 323 58 34 chr6 44365988 44366418 -138048824 - ERVL LTR ERVL -1182 4582 4123 368 331 18 12 chr6 44366621 44366784 -138048458 + HERVL LTR ERVL 5181 5344 -310 1118 305 100 22 chr6 44366931 44367331 -138047911 + LTR16A LTR ERVL 16 446 -4 1802 159 10 0 chr6 44367371 44367687 -138047555 - AluSx SINE Alu 0 312 3 1125 222 56 101 chr6 44367721 44368194 -138047048 - L1M4 LINE L1 -1304 4842 4349 2162 106 0 20 chr6 44368194 44368496 -138046746 - AluSx SINE Alu -16 296 1 2155 110 10 7 chr6 44368505 44368804 -138046438 - AluSx SINE Alu -12 300 1 1125 222 56 101 chr6 44368804 44368873 -138046369 - L1M4 LINE L1 -1805 4341 4315 2217 130 3 0 chr6 44369065 44369372 -138045870 + AluSx SINE Alu 1 308 -4 257 273 15 0 chr6 44369375 44369441 -138045801 - L1M4 LINE L1 -1813 4333 4267 952 175 66 12 chr6 44369700 44369866 -138045376 + FAM SINE Alu 1 175 0 843 162 102 0 chr6 44370057 44370224 -138045018 + MER5A DNA MER1_type 1 184 -5 3892 105 4 8 chr6 44370765 44371278 -138043964 + MER9 LTR ERVK 1 511 0 1767 150 7 11 chr6 44371366 44371646 -138043596 + AluJo SINE Alu 4 282 -30 201 74 0 0 chr6 44371649 44371676 -138043566 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2455 80 3 10 chr6 44372125 44372439 -138042803 + AluSx SINE Alu 1 312 0 548 242 159 6 chr6 44372703 44372860 -138042382 - MER5A DNA MER1_type 0 189 9 2360 74 6 19 chr6 44373153 44373464 -138041778 + AluY SINE Alu 1 307 -4 2283 100 3 0 chr6 44373597 44373896 -138041346 + AluSx SINE Alu 1 300 -12 891 203 169 34 chr6 44374034 44374384 -138040858 - L1ME4a LINE L1 -12 6109 5713 1680 164 11 3 chr6 44374626 44374912 -138040330 - AluJo SINE Alu -24 288 1 37 0 0 0 chr6 44375151 44375188 -138040054 + AT_rich Low_complexity Low_complexity 1 37 0 538 231 88 2 chr6 44375435 44375618 -138039624 + MER20B DNA MER1_type 1 236 -547 234 211 56 42 chr6 44375613 44375684 -138039558 + MLT1L LTR MaLR 37 108 -459 * 2731 148 48 17 chr6 44375689 44376210 -138039032 + L1MC3 LINE L1 7235 7771 -14 327 277 96 6 chr6 44376280 44376446 -138038796 + MER20B DNA MER1_type 317 497 -286 783 214 87 49 chr6 44376523 44376789 -138038453 + MER20B DNA MER1_type 506 781 -2 594 289 109 25 chr6 44376981 44377165 -138038077 + MLT1L LTR MaLR 132 299 -316 2616 93 54 0 chr6 44377165 44377519 -138037723 - THE1C LTR MaLR -2 373 1 594 289 109 25 chr6 44377519 44377656 -138037586 + MLT1L LTR MaLR 299 480 -135 1974 126 45 0 chr6 44377669 44377955 -138037287 - AluSq SINE Alu -14 299 1 1942 143 71 29 chr6 44378073 44378423 -138036819 + MLT1A1 LTR MaLR 1 365 0 1096 170 200 5 chr6 44378700 44378900 -138036342 + MER8 DNA MER2_type 1 239 0 1296 198 81 0 chr6 44380854 44381127 -138034115 - AluJo SINE Alu -17 295 1 544 211 14 14 chr6 44381717 44381864 -138033378 + GA-rich Low_complexity Low_complexity 2 148 0 1409 151 3 173 chr6 44382532 44382890 -138032352 - AluJb SINE Alu -3 299 3 2056 143 7 0 chr6 44382926 44383220 -138032022 + AluJo SINE Alu 1 296 -16 349 292 130 15 chr6 44383233 44383636 -138031606 + L1MEd LINE L1 843 1653 -837 2398 84 3 0 chr6 44383652 44383951 -138031291 + AluSp SINE Alu 1 300 -13 1700 159 10 28 chr6 44384020 44384310 -138030932 + AluJo SINE Alu 1 285 -27 25 31 0 0 chr6 44384357 44384389 -138030853 + AT_rich Low_complexity Low_complexity 1 32 0 2123 102 3 0 chr6 44384489 44384773 -138030469 - AluY SINE Alu -25 286 2 22 35 0 0 chr6 44384778 44384807 -138030435 + AT_rich Low_complexity Low_complexity 1 29 0 341 262 67 13 chr6 44384936 44385085 -138030157 + L1MEd LINE L1 2190 2346 -3783 24 0 0 0 chr6 44385721 44385745 -138029497 + AT_rich Low_complexity Low_complexity 1 24 0 256 250 148 11 chr6 44386538 44386626 -138028616 - MIR SINE MIR -42 220 121 2420 70 0 0 chr6 44387018 44387338 -138027904 + AluY SINE Alu 1 311 0 1220 147 25 59 chr6 44387340 44387578 -138027664 + AluJo SINE Alu 1 230 -82 22 35 0 0 chr6 44387742 44387771 -138027471 + AT_rich Low_complexity Low_complexity 1 29 0 540 311 116 1 chr6 44389241 44389457 -138025785 + MIR SINE MIR 11 249 -13 300 237 52 61 chr6 44389511 44389645 -138025597 + HAL1b LINE L1 1245 1343 -5 230 86 29 0 chr6 44389775 44389810 -138025432 + L1MA9 LINE L1 6277 6312 0 517 314 132 23 chr6 44390497 44390755 -138024487 + LTR16C LTR ERVL 88 373 -118 204 186 105 58 chr6 44391140 44391226 -138024016 - MIR SINE MIR -86 176 87 23 0 0 0 chr6 44391571 44391594 -138023648 + AT_rich Low_complexity Low_complexity 1 23 0 829 204 102 102 chr6 44391708 44391992 -138023250 + MER90 LTR ERV1 1 284 -291 655 214 35 40 chr6 44391992 44392165 -138023077 + MER76 LTR ERV 1 172 -516 979 229 81 83 chr6 44392179 44392704 -138022538 + MLT1E2 LTR MaLR 61 564 -62 640 86 0 0 chr6 44393078 44393159 -138022083 + AluSg SINE Alu 2 82 -228 1967 80 8 0 chr6 44393302 44393553 -138021689 - AluSc SINE Alu -13 296 44 317 222 100 0 chr6 44393558 44393648 -138021594 + L1ME4a LINE L1 5608 5706 -415 613 226 266 6 chr6 44393662 44393839 -138021403 - MIR SINE MIR -28 234 12 340 325 73 10 chr6 44393847 44394053 -138021189 + L1ME4a LINE L1 5753 5971 -150 2239 100 0 3 chr6 44394787 44395077 -138020165 - AluSg SINE Alu -18 292 4 385 330 0 25 chr6 44395103 44395221 -138020021 + MER89-int LTR ERV1 2001 2115 -2532 9225 226 69 16 chr6 44395227 44397133 -138018109 - L1MDa LINE L1 -1162 5378 3576 252 0 0 0 chr6 44397133 44397161 -138018081 + (TC)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr6 44397160 44397183 -138018059 + (TA)n Simple_repeat Simple_repeat 1 23 0 9225 226 69 16 chr6 44397161 44397182 -138018060 - L1MDa LINE L1 -2964 3576 3558 2424 54 0 0 chr6 44397182 44397486 -138017756 - AluY SINE Alu 0 304 1 9225 226 69 16 chr6 44397486 44397873 -138017369 - L1MDa LINE L1 -2982 3558 3193 1808 174 0 3 chr6 44397873 44398167 -138017075 + AluJb SINE Alu 1 293 -19 9225 226 69 16 chr6 44398167 44398779 -138016463 - L1MDa LINE L1 -3347 3193 2322 275 303 0 0 chr6 44398787 44398876 -138016366 - L1MC4 LINE L1 -1339 6703 6615 * 515 242 62 0 chr6 44398869 44398997 -138016245 - L1MDa LINE L1 -4208 2332 2197 * 3386 168 45 13 chr6 44398992 44399592 -138015650 - L1MDa LINE L1 -5906 634 16 306 308 72 56 chr6 44399622 44399842 -138015400 + MER89-int LTR ERV1 4428 4654 -2147 2010 159 60 20 chr6 44399842 44400193 -138015049 - MLT1A1 LTR MaLR 0 365 1 306 308 72 56 chr6 44400193 44400222 -138015020 + MER89-int LTR ERV1 4654 4681 -2120 2265 94 20 7 chr6 44400391 44400689 -138014553 - AluSg SINE Alu -8 302 1 249 135 0 0 chr6 44401900 44401952 -138013290 + (TA)n Simple_repeat Simple_repeat 2 53 0 32 26 0 0 chr6 44401952 44401991 -138013251 + AT_rich Low_complexity Low_complexity 1 39 0 319 43 0 0 chr6 44402135 44402182 -138013060 - AluSc SINE Alu 0 299 253 3849 112 73 60 chr6 44402629 44403689 -138011553 + MER11A LTR ERVK 1 1067 -4 277 250 227 15 chr6 44403883 44404015 -138011227 - MIR SINE MIR -71 191 32 2219 112 7 0 chr6 44404261 44404557 -138010685 - AluSx SINE Alu -14 298 1 670 235 60 12 chr6 44404660 44404826 -138010416 + MIR SINE MIR 89 262 0 2451 48 14 3 chr6 44405419 44405714 -138009528 - AluY SINE Alu -10 301 4 323 255 122 0 chr6 44405823 44405921 -138009321 + MIR3 SINE MIR 97 206 -2 250 352 46 0 chr6 44407010 44407118 -138008124 + MIR SINE MIR 9 121 -141 185 94 31 0 chr6 44407147 44407179 -138008063 + T-rich Low_complexity Low_complexity 3 35 0 1823 113 19 38 chr6 44407181 44407499 -138007743 - AluJb SINE Alu 0 312 1 182 272 111 74 chr6 44407597 44407678 -138007564 + L2 LINE L2 3189 3272 0 249 319 39 60 chr6 44407933 44408115 -138007127 - MLT1K LTR MaLR -409 179 2 2280 93 3 0 chr6 44408348 44408639 -138006603 - AluSx SINE Alu -20 292 1 405 280 54 46 chr6 44408679 44408790 -138006452 + L1ME3A LINE L1 4506 4615 -1531 1489 178 10 51 chr6 44408790 44409223 -138006019 - AluJb SINE Alu 0 421 1 405 280 54 46 chr6 44409223 44409370 -138005872 + L1ME3A LINE L1 4615 4768 -1378 1693 247 48 84 chr6 44409431 44409993 -138005249 + MLT1F1 LTR MaLR 1 567 0 1917 122 41 0 chr6 44410272 44410543 -138004699 + AluSx SINE Alu 1 282 -30 213 39 0 0 chr6 44410546 44410572 -138004670 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 544 246 32 23 chr6 44410615 44410835 -138004407 + L1ME3A LINE L1 5175 5396 -750 1279 165 53 0 chr6 44410837 44411043 -138004199 + AluSg/x SINE Alu 85 301 -9 229 67 22 44 chr6 44411050 44411095 -138004147 + (GGAAA)n Simple_repeat Simple_repeat 5 48 0 1055 128 0 11 chr6 44411096 44411275 -138003967 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 2387 93 0 0 chr6 44411276 44411577 -138003665 + AluSg SINE Alu 3 303 -7 803 295 84 33 chr6 44411599 44412108 -138003134 + L1ME3A LINE L1 5413 5947 -223 2441 175 25 14 chr6 44412482 44412922 -138002320 - MER65A LTR ERV1 0 445 1 1255 231 59 21 chr6 44412944 44413282 -138001960 - MLT1C LTR MaLR 0 467 117 2518 116 53 134 chr6 44413282 44413898 -138001344 + LTR14B LTR ERVK 17 562 -25 1088 232 37 61 chr6 44414105 44414433 -138000809 + MER11D LTR ERVK 103 422 -475 565 230 120 28 chr6 44414576 44414793 -138000449 + MER11D LTR ERVK 646 882 -15 491 48 0 0 chr6 44414804 44414866 -138000376 + LTR14A LTR ERVK 283 344 0 437 161 2 114 chr6 44414870 44414967 -138000275 - MLT1C LTR MaLR -352 115 49 2211 114 3 3 chr6 44414967 44415265 -137999977 + AluSx SINE Alu 2 299 -13 437 161 2 114 chr6 44415265 44415310 -137999932 - MLT1C LTR MaLR -418 49 1 404 72 0 169 chr6 44415434 44415517 -137999725 + MER4B LTR ERV1 1 69 -541 1906 116 73 25 chr6 44415645 44416105 -137999137 + MER4B LTR ERV1 86 610 0 329 285 48 92 chr6 44416499 44416706 -137998536 - MIR3 SINE MIR -3 205 8 241 272 49 12 chr6 44416723 44416804 -137998438 - MIR SINE MIR 0 262 179 276 287 7 52 chr6 44417012 44417148 -137998094 - L1ME LINE L1 -403 5718 5589 334 303 77 31 chr6 44417231 44417492 -137997750 - LTR40b LTR ERVL -54 408 136 1485 201 140 53 chr6 44417809 44418322 -137996920 + LTR64 LTR ERVK 1 558 0 1539 137 36 4 chr6 44419167 44419415 -137995827 + L1PB3 LINE L1 5890 6145 -9 339 89 0 0 chr6 44419415 44419471 -137995771 + (TA)n Simple_repeat Simple_repeat 2 57 0 2423 63 0 10 chr6 44419471 44419770 -137995472 - AluY SINE Alu -15 296 1 25 51 0 0 chr6 44419777 44419816 -137995426 + AT_rich Low_complexity Low_complexity 1 39 0 931 172 5 79 chr6 44420508 44420711 -137994531 + AluJo SINE Alu 85 272 -40 1448 137 0 5 chr6 44420837 44421056 -137994186 - AluJb SINE Alu -16 296 79 1481 148 0 4 chr6 44421217 44421446 -137993796 - AluJb SINE Alu -21 291 64 298 333 12 36 chr6 44421881 44422049 -137993193 - L1MC4a LINE L1 -1916 5892 5729 275 195 12 73 chr6 44422085 44422167 -137993075 - L1MC4a LINE L1 -2083 5725 5649 29 60 0 0 chr6 44422479 44422529 -137992713 + AT_rich Low_complexity Low_complexity 1 50 0 195 313 104 10 chr6 44422806 44422902 -137992340 + L2 LINE L2 2951 3055 -217 2520 141 41 0 chr6 44423112 44423501 -137991741 - L1PA16 LINE L1 -4 6162 5758 6848 153 35 4 chr6 44423750 44424966 -137990276 + L1M3f LINE L1 11 1263 -4065 343 134 0 60 chr6 44424988 44425055 -137990187 + AluJb SINE Alu 75 137 -165 1306 193 10 92 chr6 44425064 44425213 -137990029 + AluJb SINE Alu 12 125 -187 207 100 0 0 chr6 44425213 44425243 -137989999 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1306 193 10 92 chr6 44425243 44425399 -137989843 + AluJb SINE Alu 125 292 -20 218 32 32 0 chr6 44425399 44425430 -137989812 + (GA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr6 44426468 44426489 -137988753 + (TG)n Simple_repeat Simple_repeat 1 21 0 1801 153 58 3 chr6 44427477 44427772 -137987470 + AluJb SINE Alu 1 311 -1 2023 76 41 35 chr6 44427842 44427855 -137987387 - AluSc SINE Alu -17 292 281 306 0 0 0 chr6 44427855 44427889 -137987353 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2023 76 41 35 chr6 44427889 44428165 -137987077 - AluSc SINE Alu -28 281 1 511 197 82 8 chr6 44428434 44428556 -137986686 - MER94 DNA DNA -3 131 1 2134 124 0 0 chr6 44428905 44429226 -137986016 + AluSx SINE Alu 1 321 0 693 277 6 0 chr6 44429562 44429739 -137985503 + MER45A DNA AcHobo 1 178 0 2288 112 0 0 chr6 44430739 44431044 -137984198 - AluSx SINE Alu -7 305 1 663 238 24 6 chr6 44431148 44431312 -137983930 + LTR33 LTR ERVL 15 181 -340 225 268 24 37 chr6 44431554 44431636 -137983606 + LTR33 LTR ERVL 441 521 0 312 224 67 93 chr6 44431751 44431856 -137983386 + MIR SINE MIR 2 99 -125 1753 181 3 10 chr6 44431856 44432154 -137983088 - AluJb SINE Alu -16 296 1 312 224 67 93 chr6 44432154 44432219 -137983023 + MIR SINE MIR 99 164 -60 461 120 429 23 chr6 44432606 44432739 -137982503 + MER5A DNA MER1_type 3 189 0 2049 121 11 0 chr6 44432810 44433130 -137982112 + AluSx SINE Alu 1 323 0 221 296 235 31 chr6 44433637 44433735 -137981507 + MIR SINE MIR 24 141 -121 355 313 47 14 chr6 44435322 44435533 -137979709 - L1ME LINE L1 -305 5816 5599 2209 129 0 3 chr6 44435591 44435902 -137979340 - AluSx SINE Alu -2 310 1 230 293 34 54 chr6 44435988 44436135 -137979107 - L1MC/D LINE L1 -1921 5887 5744 272 259 76 38 chr6 44436170 44436301 -137978941 - MLT1J LTR MaLR -338 173 38 1828 188 3 10 chr6 44436769 44437078 -137978164 - AluJb SINE Alu -5 307 1 423 217 94 36 chr6 44437302 44437440 -137977802 - L2 LINE L2 -203 3069 2924 2218 109 0 26 chr6 44437515 44437826 -137977416 + AluSx SINE Alu 1 303 -9 2200 91 17 17 chr6 44437888 44438185 -137977057 + AluSx SINE Alu 1 297 -15 597 306 36 35 chr6 44438893 44439148 -137976094 + MIR SINE MIR 3 256 -6 668 211 104 59 chr6 44439636 44439743 -137975499 - HAL1 LINE L1 -110 2397 2296 1655 158 39 3 chr6 44439743 44440027 -137975215 + AluSx SINE Alu 1 294 -18 668 211 104 59 chr6 44440027 44440208 -137975034 - HAL1 LINE L1 -211 2296 2096 1023 175 21 5 chr6 44440213 44440407 -137974835 + Charlie1a DNA MER1_type 59 255 -1200 60 15 0 0 chr6 44441608 44441675 -137973567 + AT_rich Low_complexity Low_complexity 1 67 0 307 274 101 0 chr6 44442790 44442958 -137972284 - L1ME LINE L1 -665 5509 5325 805 167 0 0 chr6 44443411 44443543 -137971699 + FLAM_C SINE Alu 1 132 -1 782 300 61 45 chr6 44443694 44444491 -137970751 - L1ME LINE L1 -1089 5057 4241 1959 168 3 0 chr6 44444491 44444800 -137970442 - AluJo SINE Alu -2 310 1 782 300 61 45 chr6 44444800 44444943 -137970299 - L1ME LINE L1 -1905 4241 4102 1771 189 7 0 chr6 44445009 44445316 -137969926 + AluJo SINE Alu 1 309 -3 300 278 0 0 chr6 44445383 44445480 -137969762 - L1ME LINE L1 -2100 4046 3950 2065 124 3 13 chr6 44446181 44446488 -137968754 - AluJb SINE Alu -8 304 1 1824 166 51 0 chr6 44446894 44447189 -137968053 - AluJb SINE Alu -2 310 1 2565 140 66 30 chr6 44447273 44447830 -137967412 - L1MB7 LINE L1 -21 6163 5587 391 248 102 79 chr6 44447960 44447972 -137967270 - L1MB7 LINE L1 -633 5488 5478 1728 209 6 12 chr6 44447972 44448292 -137966950 + 7SLRNA srpRNA srpRNA 1 318 -2 391 248 102 79 chr6 44448292 44448476 -137966766 - L1MB7 LINE L1 -643 5478 5284 1884 169 3 16 chr6 44448476 44448784 -137966458 - AluJb SINE Alu -8 304 1 391 248 102 79 chr6 44448784 44448815 -137966427 - L1MB7 LINE L1 -837 5284 5255 1404 230 86 16 chr6 44448830 44449260 -137965982 + LTR40c LTR ERVL 1 460 -5 2436 265 35 26 chr6 44449334 44450390 -137964852 - L1MC3 LINE L1 -23 7762 6698 28 86 0 0 chr6 44450399 44450469 -137964773 + AT_rich Low_complexity Low_complexity 1 70 0 2305 113 0 3 chr6 44450533 44450842 -137964400 + AluSx SINE Alu 1 308 -4 721 298 47 13 chr6 44450976 44451211 -137964031 - MIR SINE MIR 0 262 20 2352 119 0 0 chr6 44451261 44451571 -137963671 - AluSg SINE Alu 0 310 1 907 249 42 32 chr6 44451731 44452084 -137963158 - L1ME3A LINE L1 -219 5951 5593 311 313 56 26 chr6 44452089 44452284 -137962958 + L3 LINE CR1 583 783 -794 1009 92 0 0 chr6 44452512 44452679 -137962563 + AluY SINE Alu 154 320 0 752 299 141 24 chr6 44452695 44452995 -137962247 + L3 LINE CR1 835 1209 -368 3172 88 2 5 chr6 44452995 44453439 -137961803 + L1PA8 LINE L1 5729 6171 -1 752 299 141 24 chr6 44453439 44453600 -137961642 + L3 LINE CR1 1209 1350 -227 2469 72 0 3 chr6 44453711 44454018 -137961224 - AluY SINE Alu -5 306 1 944 181 0 19 chr6 44454506 44454666 -137960576 + FRAM SINE Alu 2 158 -8 1246 213 147 60 chr6 44454876 44455373 -137959869 - MLT1F LTR MaLR 0 542 3 356 287 82 8 chr6 44455381 44455503 -137959739 - MIR SINE MIR -58 150 20 22 56 0 0 chr6 44455605 44455641 -137959601 + AT_rich Low_complexity Low_complexity 1 36 0 2118 104 0 0 chr6 44456068 44456346 -137958896 - AluSx SINE Alu -30 282 5 957 133 27 0 chr6 44456830 44456980 -137958262 - L1PA16 LINE L1 -17 6149 5996 310 246 49 33 chr6 44457381 44457503 -137957739 + L1MC5 LINE L1 7806 7929 -32 188 228 81 114 chr6 44458411 44458534 -137956708 + L2 LINE L2 3114 3232 -81 495 266 79 7 chr6 44458538 44458677 -137956565 + MIR SINE MIR 12 160 -102 259 191 63 0 chr6 44458677 44458740 -137956502 + HsTC2 DNA Tc2 4 70 -1828 185 0 40 0 chr6 44458813 44458838 -137956404 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 324 192 0 14 chr6 44459051 44459124 -137956118 + HsTC2 DNA Tc2 1823 1894 -4 300 221 32 21 chr6 44459127 44459222 -137956020 + MIR SINE MIR 157 252 -10 418 355 18 18 chr6 44459388 44459557 -137955685 + MIR3 SINE MIR 23 191 -17 447 170 140 5 chr6 44459560 44459731 -137955511 - L1MD3 LINE L1 -1 7994 7729 40 37 0 0 chr6 44460340 44460394 -137954848 + AT_rich Low_complexity Low_complexity 1 54 0 14166 27 1 4 chr6 44460408 44462868 -137952374 - L1PA4 LINE L1 -2 6153 3700 1685 159 14 28 chr6 44462908 44463229 -137952013 + AluJo SINE Alu 1 317 0 2714 122 58 2 chr6 44463449 44463901 -137951341 + MER31A LTR ERV1 1 477 -8 673 279 84 43 chr6 44463992 44464458 -137950784 - HAL1 LINE L1 -738 1769 1285 2211 135 109 3 chr6 44464465 44464850 -137950392 + MSTB LTR MaLR 1 426 0 31 0 0 0 chr6 44464968 44464999 -137950243 + AT_rich Low_complexity Low_complexity 1 31 0 1982 34 0 0 chr6 44464999 44465234 -137950008 - L1PA3 LINE L1 -3 6152 5918 846 163 0 0 chr6 44465353 44465482 -137949760 - FLAM_C SINE Alu -4 129 1 734 261 89 56 chr6 44465974 44466583 -137948659 - L1M4 LINE L1 -1992 4154 3526 1815 151 30 20 chr6 44467418 44467717 -137947525 + AluJb SINE Alu 1 302 -10 3261 156 30 54 chr6 44468626 44468730 -137946512 - L1M LINE L1 -744 5402 5297 2230 106 0 3 chr6 44468730 44469022 -137946220 - AluSx SINE Alu -21 291 1 3261 156 30 54 chr6 44469022 44469645 -137945597 - L1M LINE L1 -849 5297 4704 * 3298 131 29 94 chr6 44469643 44470374 -137944868 + L1MA9 LINE L1 5420 6102 -210 918 164 0 0 chr6 44470374 44470526 -137944716 - AluJb SINE Alu -13 299 148 1065 89 31 85 chr6 44470526 44470750 -137944492 + L1MA9 LINE L1 6101 6312 0 4626 125 35 36 chr6 44470875 44471041 -137944201 - L1MB4 LINE L1 0 6180 6015 2430 84 0 0 chr6 44471041 44471340 -137943902 + AluSq SINE Alu 1 299 -14 4626 125 35 36 chr6 44471340 44472128 -137943114 - L1MB4 LINE L1 -165 6015 5225 1765 172 13 0 chr6 44472148 44472451 -137942791 - AluJo SINE Alu -5 307 1 249 247 118 6 chr6 44472483 44472661 -137942581 - L1M4 LINE L1 -2695 3451 3254 1261 46 0 0 chr6 44473112 44473264 -137941978 - L1PA7 LINE L1 -6 6148 5997 345 300 0 30 chr6 44473363 44473463 -137941779 - MER5A DNA MER1_type 0 189 93 591 188 87 72 chr6 44473464 44473672 -137941570 + MLT1D LTR MaLR 1 211 -294 218 356 88 19 chr6 44473859 44474019 -137941223 + L3 LINE CR1 429 599 -978 4636 163 17 17 chr6 44475261 44475912 -137939330 - L1MB8 LINE L1 0 6178 5528 2513 73 0 0 chr6 44475912 44476214 -137939028 - AluY SINE Alu -9 302 1 4636 163 17 17 chr6 44476214 44476655 -137938587 - L1MB8 LINE L1 -650 5528 5088 30 27 0 0 chr6 44476686 44476723 -137938519 + AT_rich Low_complexity Low_complexity 1 37 0 1390 161 86 71 chr6 44476723 44477003 -137938239 - AluJo SINE Alu -28 284 1 2347 116 0 0 chr6 44480101 44480404 -137934838 - AluSx SINE Alu -9 303 1 22 0 0 0 chr6 44481047 44481069 -137934173 + AT_rich Low_complexity Low_complexity 1 22 0 710 163 16 8 chr6 44481489 44481618 -137933624 - FLAM_C SINE Alu -3 130 1 1224 178 59 3 chr6 44481853 44482139 -137933103 - MER33 DNA MER1_type -22 302 1 25 0 0 0 chr6 44482248 44482273 -137932969 + AT_rich Low_complexity Low_complexity 1 25 0 527 178 64 76 chr6 44482775 44482932 -137932310 - L1MA9 LINE L1 -36 6276 6122 306 123 0 0 chr6 44483238 44483295 -137931947 + (TC)n Simple_repeat Simple_repeat 2 58 0 378 326 96 76 chr6 44483485 44483776 -137931466 + L2 LINE L2 2976 3272 0 288 193 0 0 chr6 44484157 44484214 -137931028 - L1P LINE L1 -1217 4929 4873 3305 104 43 6 chr6 44484216 44484689 -137930553 + L1PA13 LINE L1 5633 6128 -35 180 0 0 0 chr6 44484689 44484709 -137930533 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 3305 104 43 6 chr6 44484709 44484745 -137930497 + L1PA13 LINE L1 6128 6161 -2 263 49 24 0 chr6 44486147 44486188 -137929054 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2004 111 4 7 chr6 44486188 44486468 -137928774 - AluSx SINE Alu -33 279 1 274 290 0 0 chr6 44487386 44487455 -137927787 + CT-rich Low_complexity Low_complexity 3 71 0 939 184 94 37 chr6 44488510 44488754 -137926488 - MIR SINE MIR -4 258 1 180 0 0 0 chr6 44489395 44489415 -137925827 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1388 71 0 5 chr6 44489435 44489633 -137925609 - L1PA8 LINE L1 -85 6087 5891 316 313 130 23 chr6 44490462 44490593 -137924649 - L2 LINE L2 -1 3271 3127 23 33 0 0 chr6 44490885 44490915 -137924327 + AT_rich Low_complexity Low_complexity 1 30 0 1935 102 109 7 chr6 44491331 44491605 -137923637 + AluSg SINE Alu 2 303 -7 32 26 0 0 chr6 44491990 44492029 -137923213 + AT_rich Low_complexity Low_complexity 1 39 0 2274 96 17 0 chr6 44492034 44492336 -137922906 - AluSc SINE Alu -2 307 1 1339 198 47 10 chr6 44492336 44492797 -137922445 - L1M4 LINE L1 -693 5491 5014 2433 88 0 0 chr6 44494429 44494734 -137920508 + AluSg SINE Alu 1 305 -5 25 31 0 0 chr6 44494895 44494927 -137920315 + AT_rich Low_complexity Low_complexity 1 32 0 487 291 120 8 chr6 44495031 44495265 -137919977 + MIR SINE MIR 2 261 -1 2124 127 3 0 chr6 44495981 44496273 -137918969 - AluSp SINE Alu -20 293 1 1877 155 14 24 chr6 44496672 44496968 -137918274 - AluJb SINE Alu -19 293 1 735 222 42 0 chr6 44497058 44497202 -137918040 - FRAM SINE Alu -14 152 3 270 311 35 19 chr6 44497273 44497533 -137917709 - L1MEd LINE L1 -3750 2379 2116 944 271 121 51 chr6 44497569 44498196 -137917046 - L1MEd LINE L1 -5168 951 281 1685 256 37 30 chr6 44498286 44498857 -137916385 - L1ME3 LINE L1 -6 6156 5582 1021 124 11 0 chr6 44498977 44499154 -137916088 - L1MB4 LINE L1 0 6180 6002 2466 57 0 3 chr6 44499185 44499482 -137915760 + AluY SINE Alu 2 297 -14 477 221 249 0 chr6 44499887 44500068 -137915174 + LTR50 LTR ERVL 53 278 -517 1885 158 75 32 chr6 44500341 44500779 -137914463 + LTR2B LTR ERV1 34 490 0 311 153 22 95 chr6 44500788 44500880 -137914362 + LTR50 LTR ERVL 437 793 -2 2092 106 13 30 chr6 44500998 44501171 -137914071 + AluSx SINE Alu 1 168 -144 4362 101 71 3 chr6 44501171 44501847 -137913395 + LTR30 LTR ERV1 1 722 0 2092 106 13 30 chr6 44501847 44501975 -137913267 + AluSx SINE Alu 168 297 -15 1130 155 24 0 chr6 44501985 44502198 -137913044 + L1MB7 LINE L1 5948 6165 -19 431 286 150 21 chr6 44502701 44502959 -137912283 - LTR33 LTR ERVL -125 398 73 287 341 156 10 chr6 44503108 44503422 -137911820 + L2 LINE L2 1468 1827 -1487 1962 143 19 16 chr6 44503474 44503838 -137911404 - L1MB8 LINE L1 0 6178 5814 558 216 0 0 chr6 44503856 44503953 -137911289 - FRAM SINE Alu -33 143 47 2758 168 16 29 chr6 44503957 44504408 -137910834 - L1MB8 LINE L1 -350 5828 5373 2062 117 0 17 chr6 44504408 44504708 -137910534 - AluSx SINE Alu -17 295 1 2758 168 16 29 chr6 44504708 44505186 -137910056 - L1MB8 LINE L1 -805 5373 4904 320 198 35 112 chr6 44505243 44505359 -137909883 - HAL1 LINE L1 -2384 123 17 1831 133 39 11 chr6 44505837 44506122 -137909120 - AluJo SINE Alu -19 293 1 993 184 6 0 chr6 44506138 44506301 -137908941 - FRAM SINE Alu -19 157 1 655 262 45 50 chr6 44506414 44506669 -137908573 + MIR SINE MIR 1 248 -14 1183 161 33 33 chr6 44507248 44507490 -137907752 - MER68 LTR ERV1 -315 247 6 312 27 0 0 chr6 44508646 44508683 -137906559 + (GA)n Simple_repeat Simple_repeat 2 38 0 967 122 32 150 chr6 44508698 44508945 -137906297 + MER20 DNA MER1_type 1 218 -1 1051 73 0 0 chr6 44510558 44510695 -137904547 + AluY SINE Alu 173 309 -2 26 30 0 0 chr6 44511663 44511696 -137903546 + AT_rich Low_complexity Low_complexity 1 33 0 308 284 154 35 chr6 44511696 44511865 -137903377 - L1ME3A LINE L1 -14 6225 6037 578 260 238 13 chr6 44511962 44512389 -137902853 - L1ME3A LINE L1 -285 5946 5392 4721 63 3 0 chr6 44512389 44512987 -137902255 + L1PA7 LINE L1 5555 6154 0 578 260 238 13 chr6 44512987 44513063 -137902179 - L1ME3A LINE L1 -839 5392 5334 332 299 7 0 chr6 44513232 44513376 -137901866 - L1ME3A LINE L1 -1101 5114 4970 494 222 24 29 chr6 44513416 44513623 -137901619 - L1ME3A LINE L1 -1555 4660 4455 679 304 119 15 chr6 44513624 44514122 -137901120 - L1MEc LINE L1 -3595 2620 2111 2228 125 0 0 chr6 44514196 44514501 -137900741 + AluSx SINE Alu 1 305 -7 29 0 0 0 chr6 44514630 44514659 -137900583 + AT_rich Low_complexity Low_complexity 1 29 0 335 300 89 17 chr6 44514715 44514895 -137900347 - HAL1 LINE L1 -815 1692 1500 280 237 46 76 chr6 44514996 44515127 -137900115 - L1MEc LINE L1 -4881 1324 1198 324 242 65 24 chr6 44515128 44515252 -137899990 + MER94 DNA DNA 1 129 -5 467 343 89 23 chr6 44516282 44516629 -137898613 - HAL1 LINE L1 -811 1696 1327 537 249 79 40 chr6 44516725 44516902 -137898340 + MIR SINE MIR 79 262 0 2256 94 7 0 chr6 44518189 44518477 -137896765 + AluSx SINE Alu 5 294 -18 429 20 0 0 chr6 44519929 44519979 -137895263 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 6042 76 4 7 chr6 44519979 44520822 -137894420 - L1PA10 LINE L1 -22 6146 5307 1968 149 7 7 chr6 44520947 44521249 -137893993 + AluSx SINE Alu 1 302 -10 868 339 44 5 chr6 44521263 44521691 -137893551 + HERVL LTR ERVL 3502 3946 -1708 777 93 12 81 chr6 44521743 44521904 -137893338 - Ricksha DNA DNA -7 3247 3098 663 129 83 0 chr6 44521892 44522024 -137893218 - Ricksha DNA DNA -1111 143 1 * 281 227 76 0 chr6 44522035 44522101 -137893141 - MIR SINE MIR -147 115 45 739 267 17 48 chr6 44522270 44522562 -137892680 + HAL1 LINE L1 1583 1865 -642 305 284 97 26 chr6 44523163 44523318 -137891924 + L1ME1 LINE L1 5955 6120 -46 449 295 132 25 chr6 44523466 44524262 -137890980 + L1M4 LINE L1 4067 4947 -1199 3295 203 80 31 chr6 44524496 44525454 -137889788 + L1M4 LINE L1 3725 4729 -1417 1612 201 7 0 chr6 44525455 44525748 -137889494 - AluJb SINE Alu -17 295 1 196 281 21 73 chr6 44526389 44526485 -137888757 - L3b LINE CR1 -361 1222 1132 183 284 68 27 chr6 44527126 44527200 -137888042 - L2 LINE L2 -1 3271 3195 383 40 0 0 chr6 44527751 44527801 -137887441 - MADE1 DNA Mariner -30 50 1 330 274 183 55 chr6 44528529 44528693 -137886549 + MIR SINE MIR 78 262 0 554 156 85 0 chr6 44529864 44529981 -137885261 - MER33 DNA MER1_type -255 69 1 2188 208 31 15 chr6 44530761 44531237 -137884005 - MLT1D LTR MaLR -1 504 21 407 231 69 23 chr6 44531258 44531388 -137883854 - MER97a DNA MER1_type? -720 174 39 342 0 0 0 chr6 44531620 44531658 -137883584 + (T)n Simple_repeat Simple_repeat 1 38 0 247 233 47 81 chr6 44531836 44531922 -137883320 + MER5A DNA MER1_type 36 118 -71 2057 130 51 0 chr6 44532263 44532594 -137882648 + MER7A DNA MER2_type 1 346 0 1826 162 17 6 chr6 44532604 44532955 -137882287 - L1MB7 LINE L1 -9 6175 5821 2521 208 11 19 chr6 44532955 44533644 -137881598 - L1MB7 LINE L1 -750 5396 4731 779 95 133 32 chr6 44533648 44533806 -137881436 - L1MB2 LINE L1 -7 6164 5991 880 245 50 0 chr6 44533843 44534182 -137881060 - L1MB7 LINE L1 -2803 3343 2988 2363 95 0 3 chr6 44534239 44534544 -137880698 + AluY SINE Alu 1 304 -7 180 355 94 14 chr6 44534720 44534858 -137880384 + MIR SINE MIR 64 212 -50 2037 160 0 19 chr6 44535029 44535347 -137879895 + AluJb SINE Alu 1 312 0 937 240 49 32 chr6 44535498 44535744 -137879498 + MIR SINE MIR 13 262 0 1497 118 41 0 chr6 44536479 44536700 -137878542 + MER30 DNA MER1_type 1 230 0 837 220 62 55 chr6 44537410 44537719 -137877523 + MER93b LTR ERV1 61 371 -2 922 96 7 0 chr6 44538181 44538317 -137876925 + L1MB8 LINE L1 6041 6177 -1 26 0 0 0 chr6 44538344 44538370 -137876872 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr6 44538825 44538856 -137876386 + AT_rich Low_complexity Low_complexity 1 31 0 199 326 64 48 chr6 44538878 44539065 -137876177 + L2 LINE L2 1037 1226 -2088 316 323 76 65 chr6 44539404 44540055 -137875187 - L2 LINE L2 -222 3050 2372 1258 129 0 0 chr6 44540185 44540363 -137874879 + AluSg/x SINE Alu 135 312 0 2422 68 0 3 chr6 44542290 44542585 -137872657 - AluY SINE Alu -17 294 1 321 262 103 35 chr6 44542942 44543087 -137872155 - MER5A DNA MER1_type 0 189 35 * 573 242 15 8 chr6 44542977 44543109 -137872133 + MER5A DNA MER1_type 57 189 0 4786 180 111 46 chr6 44543115 44543242 -137872000 - Looper DNA T2_type 0 1558 1441 1450 205 46 13 chr6 44543242 44543544 -137871698 - AluJb SINE Alu 0 312 1 2275 102 3 0 chr6 44543553 44543846 -137871396 - AluSp SINE Alu -17 296 3 4786 180 111 46 chr6 44543846 44545023 -137870219 - Looper DNA T2_type -124 1434 137 2126 124 0 0 chr6 44545023 44545330 -137869912 + AluSx SINE Alu 1 307 0 4786 180 111 46 chr6 44545330 44545477 -137869765 - Looper DNA T2_type -1421 137 1 1086 147 6 0 chr6 44545612 44545768 -137869474 - FRAM SINE Alu -19 157 1 182 244 128 26 chr6 44546844 44546922 -137868320 + L3 LINE CR1 1478 1563 -14 315 225 62 117 chr6 44547110 44547273 -137867969 - L1ME LINE L1 -4829 1252 802 213 241 23 81 chr6 44549082 44549169 -137866073 - MIR SINE MIR -45 217 136 201 274 24 48 chr6 44549321 44549405 -137865837 + MIR3 SINE MIR 125 206 -2 1114 160 88 0 chr6 44552794 44552988 -137862254 + MER58A DNA MER1_type 3 213 -11 1030 256 140 2 chr6 44554487 44554893 -137860349 - MLT1C LTR MaLR 0 467 6 23 0 0 0 chr6 44554950 44554973 -137860269 + AT_rich Low_complexity Low_complexity 1 23 0 348 194 126 0 chr6 44555039 44555142 -137860100 - MER94 DNA DNA 0 134 19 655 242 74 16 chr6 44555758 44555948 -137859294 + MIR SINE MIR 61 261 -1 391 330 87 17 chr6 44556760 44556933 -137858309 + MIR3 SINE MIR 18 202 -6 248 219 0 14 chr6 44557510 44557534 -137857708 + (TATATG)n Simple_repeat Simple_repeat 3 26 -48 2177 148 11 8 chr6 44557534 44557899 -137857343 - MER47A DNA MER2_type 0 366 1 248 219 0 14 chr6 44557899 44557947 -137857295 + (TATATG)n Simple_repeat Simple_repeat 26 74 0 222 193 24 12 chr6 44558709 44558792 -137856450 + (TA)n Simple_repeat Simple_repeat 1 84 0 306 303 0 30 chr6 44558887 44558986 -137856256 + L1MC4 LINE L1 6614 6709 -1333 396 274 0 8 chr6 44559122 44559155 -137856087 - L1ME4a LINE L1 -40 6081 6049 818 82 0 33 chr6 44559155 44559277 -137855965 + L1PA10 LINE L1 6051 6168 0 396 274 0 8 chr6 44559277 44559367 -137855875 - L1ME4a LINE L1 -72 6049 5959 2188 115 33 31 chr6 44559392 44559606 -137855636 - L1MA5A LINE L1 -2 6295 6078 1678 114 117 51 chr6 44559606 44559922 -137855320 + MER1B DNA MER1_type 1 337 0 2188 115 33 31 chr6 44559922 44560097 -137855145 - L1MA5A LINE L1 -219 6078 5905 452 267 146 55 chr6 44562409 44562574 -137852668 + MER5A DNA MER1_type 4 183 -6 452 315 60 82 chr6 44563835 44564238 -137851004 + L2 LINE L2 2869 3262 -10 282 342 67 0 chr6 44564809 44564929 -137850313 - MIR3 SINE MIR -14 194 67 1943 96 96 7 chr6 44565446 44565718 -137849524 - AluSg SINE Alu -14 296 1 631 244 51 6 chr6 44565736 44565892 -137849350 - MER63 DNA MER1_type -273 789 1 434 139 0 0 chr6 44566459 44566531 -137848711 - MER116 DNA Mariner -3 77 6 1195 237 135 28 chr6 44566815 44567041 -137848201 + L2 LINE L2 2127 2327 -987 2148 91 34 0 chr6 44567041 44567338 -137847904 + AluSg SINE Alu 1 307 -3 1195 237 135 28 chr6 44567338 44567383 -137847859 + L2 LINE L2 2327 2366 -948 253 0 26 26 chr6 44567383 44567421 -137847821 + (CAA)n Simple_repeat Simple_repeat 3 40 0 1195 237 135 28 chr6 44567421 44567541 -137847701 + L2 LINE L2 2366 2561 -753 986 237 52 87 chr6 44568274 44568641 -137846601 - MLT1I LTR MaLR -28 381 28 241 303 156 8 chr6 44568644 44568766 -137846476 - MIR SINE MIR -57 205 66 340 246 75 30 chr6 44569574 44569708 -137845534 - MLT1J LTR MaLR -366 145 6 232 269 0 0 chr6 44569708 44569760 -137845482 + L2 LINE L2 3203 3254 -18 875 145 94 153 chr6 44570913 44571107 -137844135 - L1MD1 LINE L1 0 6242 6079 300 53 0 0 chr6 44571107 44571145 -137844097 + (TG)n Simple_repeat Simple_repeat 2 39 0 875 145 94 153 chr6 44571145 44571323 -137843919 - L1MD1 LINE L1 -163 6079 5892 2332 91 0 31 chr6 44571349 44571669 -137843573 + AluSg SINE Alu 1 310 0 1904 152 14 7 chr6 44572562 44572859 -137842383 - AluJb SINE Alu -13 299 1 271 323 93 44 chr6 44572997 44573245 -137841997 - MIR SINE MIR -1 261 2 2615 75 49 3 chr6 44573781 44574129 -137841113 - THE1B LTR MaLR 0 364 1 185 314 0 0 chr6 44574208 44574259 -137840983 + L2 LINE L2 3222 3272 0 741 226 48 50 chr6 44575617 44575996 -137839246 + LTR16A1 LTR ERVL 61 443 -14 38 22 0 0 chr6 44577557 44577602 -137837640 + AT_rich Low_complexity Low_complexity 1 45 0 411 56 0 0 chr6 44577602 44577656 -137837586 + (CA)n Simple_repeat Simple_repeat 2 55 0 288 75 0 0 chr6 44577658 44577731 -137837511 + Alu SINE Alu 244 316 0 1008 131 21 7 chr6 44577883 44578118 -137837124 + CT-rich Low_complexity Low_complexity 1 420 -19 683 81 10 0 chr6 44578118 44578217 -137837025 + (TCCCC)n Simple_repeat Simple_repeat 2 101 0 1008 131 21 7 chr6 44578217 44578238 -137837004 + CT-rich Low_complexity Low_complexity 420 439 0 1818 178 6 13 chr6 44578241 44578555 -137836687 - AluJo SINE Alu 0 312 1 906 160 78 59 chr6 44578863 44579082 -137836160 - MER58A DNA MER1_type -1 223 1 219 305 12 37 chr6 44579137 44579219 -137836023 - MIR3 SINE MIR -21 187 108 45 45 0 0 chr6 44579398 44579464 -137835778 + AT_rich Low_complexity Low_complexity 1 66 0 786 276 141 15 chr6 44580371 44580769 -137834473 + HAL1 LINE L1 110 557 -1950 880 269 44 30 chr6 44581168 44581625 -137833617 - HsTC2 DNA Tc2 -327 1571 928 841 290 54 3 chr6 44581643 44581974 -137833268 + L1ME LINE L1 35 382 -6014 691 210 96 5 chr6 44582002 44582221 -137833021 + L1ME LINE L1 2586 2824 -3391 * 3756 226 72 46 chr6 44582220 44582664 -137832578 + L1ME LINE L1 3066 3497 -2718 970 112 20 117 chr6 44582664 44582913 -137832329 + L1MA7 LINE L1 6067 6291 0 3756 226 72 46 chr6 44582913 44583839 -137831403 + L1ME LINE L1 3497 4480 -1735 1916 135 0 46 chr6 44583839 44584166 -137831076 + AluSx SINE Alu 1 312 0 3756 226 72 46 chr6 44584166 44584271 -137830971 + L1ME LINE L1 4480 4581 -1634 1060 231 34 53 chr6 44584349 44584634 -137830608 + L1ME LINE L1 5232 5508 -725 2131 128 3 0 chr6 44584634 44584932 -137830310 + AluSx SINE Alu 3 301 -11 1060 231 34 53 chr6 44584932 44585099 -137830143 + L1ME LINE L1 5508 5677 -556 624 176 55 60 chr6 44585109 44585291 -137829951 - HsTC2 DNA Tc2 -1499 399 219 237 247 153 0 chr6 44585351 44585436 -137829806 - HsTC2 DNA Tc2 -1792 106 9 2351 77 3 3 chr6 44585436 44585735 -137829507 - AluSp SINE Alu -12 301 3 4229 111 25 3 chr6 44585936 44586584 -137828658 + L1PA15 LINE L1 5483 6144 -21 29 70 0 0 chr6 44587605 44587662 -137827580 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr6 44587924 44587952 -137827290 + AT_rich Low_complexity Low_complexity 1 28 0 947 34 0 0 chr6 44588075 44588193 -137827049 - L1PA4 LINE L1 0 6155 6038 2113 106 0 3 chr6 44588193 44588477 -137826765 - AluSx SINE Alu -26 286 4 180 250 154 0 chr6 44588704 44588756 -137826486 + L2 LINE L2 571 630 -2684 369 311 61 0 chr6 44588788 44588920 -137826322 + L2 LINE L2 20 159 -3155 210 203 279 13 chr6 44589059 44589138 -137826104 + L2 LINE L2 2263 2362 -952 1144 266 154 21 chr6 44589145 44589883 -137825359 + L2 LINE L2 2469 3311 -2 325 325 167 23 chr6 44589885 44590239 -137825003 - L2 LINE L2 -972 2342 1938 1628 193 3 3 chr6 44591325 44591610 -137823632 + AluJo SINE Alu 15 299 -13 2366 83 0 7 chr6 44591720 44592021 -137823221 - AluSq SINE Alu -10 303 5 1022 274 41 22 chr6 44592025 44592779 -137822463 + L1ME3A LINE L1 4887 5653 -509 293 321 25 0 chr6 44592774 44592933 -137822309 - L1M4 LINE L1 -1003 5143 4981 * 563 290 43 12 chr6 44592944 44593199 -137822043 + L1ME3A LINE L1 5676 5938 -232 224 217 43 58 chr6 44593473 44593542 -137821700 - MIR SINE MIR -80 128 61 290 326 174 16 chr6 44593663 44593853 -137821389 - L3 LINE CR1 -320 1257 1038 439 305 15 0 chr6 44594002 44594133 -137821109 + MIR SINE MIR 18 150 -58 594 197 112 101 chr6 44594172 44594360 -137820882 + MIR SINE MIR 24 213 -49 2417 275 65 33 chr6 44595719 44596665 -137818577 + L2 LINE L2 1795 2770 -544 349 276 110 59 chr6 44596797 44597069 -137818173 + L2 LINE L2 3028 3313 0 232 287 0 32 chr6 44597224 44597318 -137817924 + GA-rich Low_complexity Low_complexity 2 92 0 2133 115 0 32 chr6 44598812 44599125 -137816117 - AluSp SINE Alu -10 303 1 190 349 45 0 chr6 44599440 44599506 -137815736 + MIR SINE MIR 107 175 -87 1768 158 0 4 chr6 44600200 44600504 -137814738 + AluJo SINE Alu 23 325 0 302 266 0 51 chr6 44600578 44600657 -137814585 + MER58B DNA MER1_type 1 75 -266 1436 83 5 10 chr6 44600660 44600882 -137814360 - AluSg/x SINE Alu 0 312 92 1152 142 6 6 chr6 44600882 44601051 -137814191 - AluSq SINE Alu -144 169 1 1124 167 71 20 chr6 44601051 44601303 -137813939 + MER58B DNA MER1_type 77 341 0 784 202 18 6 chr6 44601519 44601687 -137813555 + FRAM SINE Alu 1 169 -7 21 0 0 0 chr6 44602854 44602875 -137812367 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 44602932 44602955 -137812287 + AT_rich Low_complexity Low_complexity 1 23 0 2250 234 99 33 chr6 44603940 44604509 -137810733 - L1ME3A LINE L1 -75 6095 5565 2111 101 31 0 chr6 44604509 44604795 -137810447 - AluSx SINE Alu -17 295 1 2250 234 99 33 chr6 44604795 44605616 -137809626 - L1ME3A LINE L1 -605 5565 4608 863 219 78 29 chr6 44605728 44605970 -137809272 + MER102b DNA MER1_type 85 338 -3 2392 183 26 51 chr6 44606033 44606603 -137808639 + MER74A LTR ERVL 3 558 0 482 183 0 0 chr6 44606749 44606831 -137808411 + Tigger3(Golem) DNA MER2_type 1 82 -2947 * 1219 169 35 51 chr6 44606829 44607042 -137808200 + Tigger3(Golem) DNA MER2_type 2721 2936 -92 2537 145 31 5 chr6 44607042 44607457 -137807785 - MSTB LTR MaLR 0 426 1 1219 169 35 51 chr6 44607457 44607487 -137807755 + Tigger3(Golem) DNA MER2_type 2936 2965 -63 2371 97 3 0 chr6 44607487 44607796 -137807446 - AluSg SINE Alu 0 310 1 1219 169 35 51 chr6 44607796 44607864 -137807378 + Tigger3(Golem) DNA MER2_type 2965 3028 0 236 306 0 111 chr6 44607866 44607974 -137807268 + L2 LINE L2 3102 3197 -75 450 307 140 6 chr6 44608039 44608368 -137806874 - L2 LINE L2 -929 2385 2013 2359 87 3 6 chr6 44608395 44608706 -137806536 + AluSq SINE Alu 1 310 -3 2213 92 3 13 chr6 44609790 44610093 -137805149 - AluSg SINE Alu -10 300 1 1206 254 51 67 chr6 44610679 44610733 -137804509 - MER68 LTR ERV1 -18 544 491 1409 142 4 21 chr6 44610733 44610972 -137804270 + MER46A DNA MER2_type 1 235 -1 1206 254 51 67 chr6 44610972 44611469 -137803773 - MER68 LTR ERV1 -71 491 2 24 32 0 0 chr6 44612178 44612209 -137803033 + AT_rich Low_complexity Low_complexity 1 31 0 1369 281 76 47 chr6 44612257 44612365 -137802877 - L3 LINE CR1 -20 1557 1454 535 275 78 0 chr6 44612365 44612448 -137802794 - MER3 DNA MER1_type -1 208 133 1999 158 0 0 chr6 44612448 44612739 -137802503 - AluJb SINE Alu -21 291 1 535 275 78 0 chr6 44612739 44612848 -137802394 - MER3 DNA MER1_type -76 133 1 1369 281 76 47 chr6 44612848 44613382 -137801860 - L3 LINE CR1 -123 1454 896 257 273 9 55 chr6 44615048 44615158 -137800084 - MIR SINE MIR -56 206 102 219 69 0 0 chr6 44615479 44615508 -137799734 + (GAATG)n Simple_repeat Simple_repeat 3 31 0 1957 148 7 10 chr6 44616068 44616372 -137798870 + AluJb SINE Alu 1 303 -9 1545 200 115 0 chr6 44616506 44616685 -137798557 - MER63B DNA MER1_type -626 436 279 2212 117 13 0 chr6 44616685 44616992 -137798250 - AluSx SINE Alu -1 311 1 1545 200 115 0 chr6 44616992 44617202 -137798040 - MER63B DNA MER1_type -783 279 2 210 239 0 0 chr6 44617641 44617687 -137797555 + L2 LINE L2 3259 3304 -9 936 51 0 0 chr6 44618279 44618396 -137796846 - AluSg/x SINE Alu -4 306 190 1168 71 0 0 chr6 44618396 44618536 -137796706 - AluSc SINE Alu -169 140 1 254 195 13 91 chr6 44618650 44618727 -137796515 + MIR SINE MIR 186 256 -6 26 0 0 0 chr6 44618847 44618873 -137796369 + AT_rich Low_complexity Low_complexity 1 26 0 210 328 16 0 chr6 44619576 44619640 -137795602 + L2 LINE L2 2713 2777 -537 301 322 0 0 chr6 44619719 44619809 -137795433 - L1MC4 LINE L1 -1338 6704 6615 201 283 17 0 chr6 44619810 44619870 -137795372 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 284 225 246 49 chr6 44619872 44620014 -137795228 + MIR SINE MIR 86 255 -7 328 367 106 23 chr6 44620030 44620286 -137794956 + L2 LINE L2 2808 3084 -188 379 303 68 55 chr6 44622408 44622695 -137792547 + L1M2 LINE L1 2138 2392 -817 297 262 43 21 chr6 44622723 44622864 -137792378 + HAL1 LINE L1 2364 2507 0 557 153 250 21 chr6 44623232 44623376 -137791866 + MER45A DNA AcHobo 2 178 0 879 184 0 32 chr6 44624010 44624168 -137791074 - FRAM SINE Alu -24 152 1 252 262 128 40 chr6 44624442 44624591 -137790651 + L1ME LINE L1 5651 5812 -309 201 129 0 0 chr6 44624625 44624656 -137790586 + (AAATG)n Simple_repeat Simple_repeat 3 33 0 1960 121 36 4 chr6 44624788 44625068 -137790174 - AluJb SINE Alu -23 289 1 231 261 169 63 chr6 44625572 44625645 -137789597 + MIR SINE MIR 25 89 -173 2720 78 100 5 chr6 44625645 44626054 -137789188 - LTR7 LTR ERV1 -2 448 1 231 261 169 63 chr6 44626054 44626122 -137789120 + MIR SINE MIR 89 181 -81 1791 206 43 12 chr6 44626122 44626545 -137788697 + MER63B DNA MER1_type 1 436 0 238 26 51 0 chr6 44627496 44627535 -137787707 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 1924 113 34 24 chr6 44628117 44628409 -137786833 + AluSq SINE Alu 1 295 -18 563 0 15 0 chr6 44629173 44629240 -137786002 + (TTTTA)n Simple_repeat Simple_repeat 1 68 0 752 213 35 0 chr6 44629240 44629381 -137785861 - FRAM SINE Alu -30 146 1 461 293 43 5 chr6 44631038 44631226 -137784016 + L1M4 LINE L1 3881 4075 -2071 381 188 0 0 chr6 44633564 44633644 -137781598 + A-rich Low_complexity Low_complexity 1 80 0 1062 155 31 3 chr6 44634599 44634922 -137780320 - L1MA9 LINE L1 -17 6295 5868 208 354 15 0 chr6 44634929 44634994 -137780248 + L3b LINE CR1 1417 1482 -101 305 339 91 18 chr6 44635501 44635666 -137779576 - L3b LINE CR1 -73 1510 1334 306 0 0 0 chr6 44636070 44636104 -137779138 + (CA)n Simple_repeat Simple_repeat 2 35 0 231 200 173 13 chr6 44637260 44637335 -137777907 - MIR SINE MIR -73 189 103 227 298 0 18 chr6 44637718 44637775 -137777467 + MIR3 SINE MIR 105 160 -48 2296 119 0 0 chr6 44637957 44638268 -137776974 + AluSx SINE Alu 1 311 -1 574 220 58 89 chr6 44638581 44638872 -137776370 + L1MC4 LINE L1 7757 8038 -4 268 71 0 0 chr6 44639911 44639953 -137775289 - Alu SINE Alu -4 297 256 862 122 0 0 chr6 44639953 44640068 -137775174 + AluSq/x SINE Alu 1 115 -198 2588 73 0 3 chr6 44640912 44641252 -137773990 + L1PA7 LINE L1 5814 6152 -2 239 326 92 21 chr6 44641420 44641561 -137773681 + L3 LINE CR1 1053 1203 -374 3096 96 2 0 chr6 44642192 44642628 -137772614 + L1PA13 LINE L1 5708 6144 -19 238 279 47 47 chr6 44643328 44643414 -137771828 - L2 LINE L2 -1 3271 3186 337 200 14 0 chr6 44644348 44644418 -137770824 - MLT1J2 LTR MaLR -22 428 358 616 286 44 5 chr6 44644471 44644674 -137770568 - MLT1I LTR MaLR -194 215 5 2263 91 0 14 chr6 44644722 44645019 -137770223 + AluSc SINE Alu 1 293 -16 2064 151 8 27 chr6 44645733 44646103 -137769139 + MLT1A1 LTR MaLR 3 365 0 288 342 32 19 chr6 44646925 44647080 -137768162 - L2 LINE L2 -472 2842 2686 483 291 101 16 chr6 44647677 44647866 -137767376 - MIR SINE MIR 0 262 58 483 260 31 8 chr6 44648579 44648706 -137766536 + L2 LINE L2 3184 3313 0 624 62 0 0 chr6 44648834 44648915 -137766327 + (CCCTAA)n Simple_repeat Simple_repeat 1 81 0 2154 128 0 3 chr6 44650415 44650719 -137764523 + AluSg SINE Alu 1 303 -7 381 261 8 42 chr6 44650921 44651040 -137764202 - MIR SINE MIR -84 178 64 193 200 20 80 chr6 44651069 44651119 -137764123 + L2 LINE L2 417 463 -2851 2029 143 3 3 chr6 44651634 44651934 -137763308 - AluSx SINE Alu -12 300 1 259 178 22 0 chr6 44652056 44652101 -137763141 + MIR SINE MIR 79 124 -138 2288 75 17 3 chr6 44652220 44652513 -137762729 - AluSp SINE Alu -9 304 8 1058 148 62 19 chr6 44652855 44653065 -137762177 + MER20 DNA MER1_type 1 219 0 365 80 0 0 chr6 44653548 44653598 -137761644 - MADE1 DNA Mariner -30 50 1 369 75 0 0 chr6 44654062 44654115 -137761127 + (TG)n Simple_repeat Simple_repeat 1 53 0 2443 78 0 0 chr6 44654330 44654625 -137760617 - AluY SINE Alu -16 295 1 275 286 120 63 chr6 44657677 44657852 -137757390 - MIR3 SINE MIR -9 199 15 369 292 85 94 chr6 44658154 44658309 -137756933 + L1ME4a LINE L1 3233 3388 -2758 2724 23 3 0 chr6 44658309 44658619 -137756623 + AluY SINE Alu 1 311 0 369 292 85 94 chr6 44658619 44658856 -137756386 + L1ME4a LINE L1 3388 3623 -2523 1934 151 3 23 chr6 44658856 44659160 -137756082 - AluJb SINE Alu -14 298 1 369 292 85 94 chr6 44659160 44659235 -137756007 + L1ME4a LINE L1 3623 3697 -2449 2197 113 0 0 chr6 44659235 44659539 -137755703 + AluSx SINE Alu 1 304 0 780 363 2 25 chr6 44659615 44660014 -137755228 + L1MA6 LINE L1 1565 1954 -5532 209 56 0 28 chr6 44660561 44660597 -137754645 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 14292 166 36 48 chr6 44660607 44661892 -137753350 + L1MA6 LINE L1 3344 4642 -3077 2245 80 17 13 chr6 44661892 44662191 -137753051 - AluY SINE Alu -11 300 1 14292 166 36 48 chr6 44662191 44665331 -137749911 + L1MA6 LINE L1 4642 7719 0 660 299 104 30 chr6 44665487 44666281 -137748961 + L1ME4a LINE L1 3887 4739 -1407 348 302 93 66 chr6 44666315 44666681 -137748561 + L1ME4a LINE L1 4787 5167 -979 2373 88 12 3 chr6 44666681 44667021 -137748221 + L1PB1 LINE L1 5809 6151 0 348 302 93 66 chr6 44667021 44667064 -137748178 + L1ME4a LINE L1 5167 5207 -939 276 30 0 0 chr6 44667134 44667167 -137748075 + (T)n Simple_repeat Simple_repeat 1 33 0 2287 96 7 3 chr6 44667249 44667552 -137747690 - AluSp SINE Alu -9 304 1 6329 30 26 18 chr6 44667575 44668338 -137746904 - SVA Other Other 0 1386 618 508 319 44 14 chr6 44668371 44668666 -137746576 + L1ME4a LINE L1 5601 5904 -217 2093 127 0 7 chr6 44668668 44669004 -137746238 + AluSx SINE Alu 3 336 0 587 140 162 11 chr6 44669052 44669281 -137745961 - MER46C DNA MER2_type -22 316 5 285 186 113 10 chr6 44669310 44669407 -137745835 + L1ME4a LINE L1 6009 6115 -6 8180 200 39 19 chr6 44669783 44670638 -137744604 + L1MB7 LINE L1 3020 3857 -2327 1579 150 166 0 chr6 44670638 44670951 -137744291 - MLT1A1 LTR MaLR 0 365 1 8180 200 39 19 chr6 44670951 44673181 -137742061 + L1MB7 LINE L1 3857 6165 -19 885 243 148 56 chr6 44673195 44673928 -137741314 - L2 LINE L2 -12 3301 2535 25 31 0 0 chr6 44676322 44676354 -137738888 + AT_rich Low_complexity Low_complexity 1 32 0 568 167 10 0 chr6 44678008 44678104 -137737138 + MER46A DNA MER2_type 1 97 -139 446 133 133 0 chr6 44678113 44678188 -137737054 + MER46A DNA MER2_type 151 235 -1 405 259 35 88 chr6 44678506 44678734 -137736508 + L2 LINE L2 3092 3307 -6 449 306 34 57 chr6 44680014 44680223 -137735019 + MIR3 SINE MIR 2 205 -3 377 233 47 12 chr6 44680421 44680507 -137734735 + MER5A DNA MER1_type 16 104 -85 208 298 35 0 chr6 44681817 44681874 -137733368 - MER5B DNA MER1_type -113 65 7 21 0 0 0 chr6 44683722 44683743 -137731499 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 44684814 44684842 -137730400 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr6 44684915 44684949 -137730293 + (TG)n Simple_repeat Simple_repeat 2 35 0 203 156 0 0 chr6 44685596 44685628 -137729614 - L2 LINE L2 -5 3308 3277 2135 130 39 0 chr6 44685761 44686091 -137729151 + MER7A DNA MER2_type 6 346 0 361 141 47 156 chr6 44686832 44686960 -137728282 - MIR SINE MIR -70 192 79 317 257 235 0 chr6 44687018 44687154 -137728088 + MIR SINE MIR 84 251 -11 342 67 0 0 chr6 44688338 44688383 -137726859 + (CA)n Simple_repeat Simple_repeat 2 46 0 2356 92 3 0 chr6 44688397 44688701 -137726541 + AluSg SINE Alu 1 305 -5 276 274 123 19 chr6 44689417 44689523 -137725719 + L1ME LINE L1 5479 5595 -526 238 209 0 0 chr6 44689567 44689610 -137725632 + L1ME LINE L1 5671 5713 -457 292 232 70 42 chr6 44689716 44689858 -137725384 - LTR16A1 LTR ERVL -311 146 1 438 321 114 0 chr6 44689971 44690217 -137725025 + L1ME3A LINE L1 5605 5878 -292 683 251 55 58 chr6 44690529 44690804 -137724438 - L2 LINE L2 -740 2574 2301 469 246 71 8 chr6 44690799 44690925 -137724317 + L2 LINE L2 3179 3312 -1 * 291 294 0 0 chr6 44690949 44691034 -137724208 - L2 LINE L2 -1018 2296 2212 212 333 79 44 chr6 44692656 44692884 -137722358 + L2 LINE L2 2999 3234 -79 904 248 42 80 chr6 44695388 44695857 -137719385 + L2 LINE L2 2697 3149 -164 2390 77 0 7 chr6 44695857 44696154 -137719088 - AluSp SINE Alu -18 295 1 904 248 42 80 chr6 44696154 44696308 -137718934 + L2 LINE L2 3149 3307 -6 333 276 63 0 chr6 44696724 44696851 -137718391 - L1MC4 LINE L1 0 8042 7908 587 244 138 33 chr6 44696854 44698526 -137716716 - L1MC4 LINE L1 -743 5797 5260 1839 114 15 0 chr6 44698526 44698789 -137716453 - AluSx SINE Alu -4 308 42 587 244 138 33 chr6 44698789 44698856 -137716386 - L1MC4 LINE L1 -1280 5260 5201 615 292 99 30 chr6 44698999 44699403 -137715839 - L1MC4 LINE L1 -2191 4349 3918 343 291 79 33 chr6 44700164 44700405 -137714837 + L2 LINE L2 2143 2394 -920 2195 127 7 0 chr6 44701637 44701944 -137713298 - AluSx SINE Alu -3 309 1 24 77 0 0 chr6 44703692 44703744 -137711498 + AT_rich Low_complexity Low_complexity 1 52 0 246 32 0 0 chr6 44703805 44703836 -137711406 + (CA)n Simple_repeat Simple_repeat 2 32 0 307 294 72 116 chr6 44703992 44704258 -137710984 - L2 LINE L2 -4 3268 3017 3360 120 86 12 chr6 44704258 44704749 -137710493 + MER1A DNA MER1_type 1 527 0 307 294 72 116 chr6 44704749 44704802 -137710440 - L2 LINE L2 -255 3017 2963 237 354 21 59 chr6 44705306 44705543 -137709699 - L2 LINE L2 -214 3058 2831 21 0 0 31 chr6 44707963 44707981 -137707261 + AT_rich Low_complexity Low_complexity 1 19 -12 762 191 0 23 chr6 44707981 44708112 -137707130 + FLAM_A SINE Alu 1 128 -5 21 0 0 31 chr6 44708112 44708125 -137707117 + AT_rich Low_complexity Low_complexity 19 31 0 3439 196 56 35 chr6 44708421 44709016 -137706226 - L1MB7 LINE L1 0 6184 5563 1760 153 33 4 chr6 44709016 44709314 -137705928 + AluSx SINE Alu 1 306 0 3439 196 56 35 chr6 44709314 44709556 -137705686 - L1MB7 LINE L1 -621 5563 5328 606 288 39 4 chr6 44709562 44709795 -137705447 - L1MC4 LINE L1 -4619 1921 1681 1539 238 66 14 chr6 44709801 44710163 -137705079 + MLT1E2 LTR MaLR 235 615 -11 1316 297 79 54 chr6 44710168 44711097 -137704145 - L1MC4 LINE L1 -5164 1366 415 466 323 95 17 chr6 44711421 44711779 -137703463 + L2 LINE L2 2702 3085 -187 195 155 28 14 chr6 44711779 44711850 -137703392 + (CA)n Simple_repeat Simple_repeat 1 72 0 299 226 314 0 chr6 44712038 44712140 -137703102 + L2 LINE L2 3180 3313 0 269 321 0 13 chr6 44713458 44713615 -137701627 - MIR SINE MIR -15 247 15 321 323 183 36 chr6 44713840 44714119 -137701123 + L3 LINE CR1 1235 1554 -23 191 61 30 0 chr6 44714635 44714668 -137700574 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 234 150 0 0 chr6 44714667 44714707 -137700535 + (CA)n Simple_repeat Simple_repeat 2 41 0 396 0 0 0 chr6 44714707 44714751 -137700491 + (TATG)n Simple_repeat Simple_repeat 2 45 0 249 261 43 0 chr6 44715117 44715186 -137700056 + MIR3 SINE MIR 134 205 -3 1074 268 20 48 chr6 44717259 44717456 -137697786 + L1ME3A LINE L1 5820 6021 -149 1917 168 3 0 chr6 44717456 44717741 -137697501 + AluJb SINE Alu 1 286 -26 312 27 0 0 chr6 44717741 44717778 -137697464 + (GA)n Simple_repeat Simple_repeat 2 38 0 1074 268 20 48 chr6 44717778 44717930 -137697312 + L1ME3A LINE L1 6019 6160 -10 483 300 158 58 chr6 44718292 44718692 -137696550 - L2 LINE L2 -3 3269 2830 1878 109 154 21 chr6 44719274 44719605 -137695637 + THE1C LTR MaLR 1 375 0 2637 46 0 0 chr6 44720156 44720459 -137694783 + AluY SINE Alu 1 303 -8 717 293 131 72 chr6 44722613 44723531 -137691711 - L2 LINE L2 -1253 2061 1090 211 281 150 31 chr6 44723789 44723949 -137691293 - L2 LINE L2 -2924 390 212 463 220 37 9 chr6 44724265 44724374 -137690868 + MER5B DNA MER1_type 1 112 -66 4791 70 25 0 chr6 44724404 44725000 -137690242 - L1PA8 LINE L1 -2 6170 5560 280 71 48 0 chr6 44725001 44725043 -137690199 + L1PA8 LINE L1 5512 5555 -576 545 180 143 62 chr6 44725111 44725272 -137689970 + MER5A DNA MER1_type 16 189 0 * 565 216 78 46 chr6 44725236 44725389 -137689853 - MER5B DNA MER1_type -2 176 19 210 37 0 0 chr6 44726438 44726465 -137688777 + (CCCTG)n Simple_repeat Simple_repeat 3 29 0 2381 74 0 10 chr6 44727101 44727411 -137687831 + AluY SINE Alu 5 311 0 901 161 0 0 chr6 44728432 44728562 -137686680 + FLAM_A SINE Alu 1 130 -3 293 380 88 12 chr6 44729015 44729354 -137685888 + L2 LINE L2 2907 3271 -1 1746 169 29 0 chr6 44730825 44730947 -137684295 + AluJb SINE Alu 1 118 -185 207 0 0 0 chr6 44730947 44730970 -137684272 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1746 169 29 0 chr6 44730970 44731142 -137684100 + AluJb SINE Alu 118 303 0 265 326 75 38 chr6 44731280 44731432 -137683810 + MIR SINE MIR 14 184 -78 2153 103 13 19 chr6 44731432 44731742 -137683500 + AluSx SINE Alu 1 308 -4 265 326 75 38 chr6 44731742 44731811 -137683431 + MIR SINE MIR 184 249 -13 299 226 16 0 chr6 44731828 44731890 -137683352 + MIR3 SINE MIR 111 173 -35 712 199 65 0 chr6 44731891 44732128 -137683114 - MLT1C-int LTR MaLR -994 377 1 1402 205 114 28 chr6 44732128 44732558 -137682684 - MLT1C LTR MaLR 0 467 1 196 246 43 109 chr6 44732847 44732985 -137682257 - L3b LINE CR1 -251 1332 1204 215 77 0 26 chr6 44734843 44734882 -137680360 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2401 208 37 34 chr6 44737057 44737711 -137677531 + L1ME1 LINE L1 5506 6161 -5 952 201 11 16 chr6 44738489 44738678 -137676564 - MIR SINE MIR -29 233 46 679 271 42 0 chr6 44739592 44739784 -137675458 - LTR16A LTR ERVL 0 450 251 195 129 0 0 chr6 44741229 44741260 -137673982 + (CCCCCT)n Simple_repeat Simple_repeat 1 31 0 297 338 60 14 chr6 44742740 44742956 -137672286 - L2 LINE L2 -181 3091 2866 352 314 52 36 chr6 44743029 44743240 -137672002 - MIR SINE MIR -40 222 10 763 279 229 3 chr6 44745602 44745917 -137669325 - MLT1J2 LTR MaLR -7 443 58 1702 192 131 10 chr6 44745918 44746329 -137668913 + MLT1C LTR MaLR 3 463 -4 200 365 0 0 chr6 44746661 44746754 -137668488 + MIR SINE MIR 59 150 -63 199 256 198 0 chr6 44747291 44747377 -137667865 + MIR SINE MIR 50 152 -110 2221 110 14 0 chr6 44747380 44747672 -137667570 + AluSq SINE Alu 1 296 -17 433 253 0 0 chr6 44747903 44747998 -137667244 + MIR SINE MIR 168 262 0 2222 134 0 0 chr6 44748265 44748570 -137666672 + AluSx SINE Alu 1 305 -7 252 288 12 12 chr6 44748594 44748674 -137666568 + CT-rich Low_complexity Low_complexity 3 82 0 2224 84 38 0 chr6 44748693 44748980 -137666262 + AluSg SINE Alu 1 298 -12 250 254 0 0 chr6 44749397 44749460 -137665782 + MIR SINE MIR 92 154 -108 1088 114 0 0 chr6 44749552 44749701 -137665541 - AluSg/x SINE Alu -9 303 155 1007 237 141 25 chr6 44749941 44750000 -137665242 - LTR16C LTR ERVL 0 491 440 2500 86 3 3 chr6 44750000 44750313 -137664929 - AluSp SINE Alu 0 313 1 1007 237 141 25 chr6 44750313 44750607 -137664635 - LTR16C LTR ERVL -51 440 97 467 246 75 37 chr6 44750682 44750816 -137664426 + L2 LINE L2 3172 3310 -3 1391 231 83 29 chr6 44750957 44751402 -137663840 + MLT1J LTR MaLR 42 510 -1 235 220 0 0 chr6 44752268 44752318 -137662924 + MIR SINE MIR 81 130 -78 183 361 12 12 chr6 44754663 44754746 -137660496 - MIR SINE MIR -60 148 66 277 313 90 21 chr6 44755033 44755177 -137660065 + MIR SINE MIR 34 187 -75 309 308 0 0 chr6 44755750 44755893 -137659349 + (TG)n Simple_repeat Simple_repeat 2 144 0 186 43 0 0 chr6 44756150 44756173 -137659069 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 273 275 101 18 chr6 44756696 44756805 -137658437 - MIR SINE MIR -71 137 20 303 324 132 18 chr6 44757456 44757675 -137657567 - MIR SINE MIR -12 250 7 224 196 76 54 chr6 44760868 44760960 -137654282 + MIR SINE MIR 14 107 -155 401 223 223 0 chr6 44761038 44761186 -137654056 - MIR SINE MIR -14 248 68 191 263 0 0 chr6 44761219 44761257 -137653985 + MIR SINE MIR 218 255 -7 414 57 0 0 chr6 44762529 44762582 -137652660 + (CAT)n Simple_repeat Simple_repeat 2 54 0 536 265 224 0 chr6 44762582 44762752 -137652490 - MIR SINE MIR -6 256 49 601 227 113 16 chr6 44763069 44763263 -137651979 - MIR SINE MIR -43 219 7 307 244 39 0 chr6 44763412 44763490 -137651752 + MIR SINE MIR 63 143 -119 999 258 96 27 chr6 44764200 44764649 -137650593 - LTR33 LTR ERVL 0 521 42 504 269 0 44 chr6 44765613 44765773 -137649469 - MIR3 SINE MIR -60 148 1 240 197 0 66 chr6 44765839 44765900 -137649342 + MIR SINE MIR 89 145 -117 494 282 31 18 chr6 44766615 44766778 -137648464 + MIR SINE MIR 31 195 -67 180 311 0 0 chr6 44766873 44766918 -137648324 - L2 LINE L2 -27 3286 3242 491 31 15 0 chr6 44767784 44767849 -137647393 + (CA)n Simple_repeat Simple_repeat 2 67 0 2216 127 0 10 chr6 44767884 44768191 -137647051 - AluSx SINE Alu -8 304 1 190 281 31 31 chr6 44768980 44769044 -137646198 + L2 LINE L2 3127 3190 -82 183 42 0 0 chr6 44769424 44769448 -137645794 + (TG)n Simple_repeat Simple_repeat 2 25 0 221 211 70 35 chr6 44770819 44770876 -137644366 + L2 LINE L2 3251 3309 -4 1719 156 27 48 chr6 44771169 44771542 -137643700 - MLT1A1 LTR MaLR 0 365 1 1750 132 10 36 chr6 44771542 44771846 -137643396 - MLT1A1-int LTR MaLR 0 1735 1440 434 261 19 2 chr6 44771853 44771968 -137643274 + FLAM_C SINE Alu 9 109 -24 5702 190 102 57 chr6 44772018 44773238 -137642004 - MLT1A2-int LTR MaLR -280 1455 163 2483 60 0 17 chr6 44773238 44773539 -137641703 + AluY SINE Alu 1 296 -15 5702 190 102 57 chr6 44773539 44773710 -137641532 - MLT1A2-int LTR MaLR -1572 163 1 1298 176 39 132 chr6 44773710 44774120 -137641122 - MLT1A2 LTR MaLR 0 374 3 928 288 104 11 chr6 44774136 44774821 -137640421 - L1ME3 LINE L1 -278 5884 5129 2369 113 0 0 chr6 44774951 44775262 -137639980 + AluY SINE Alu 1 311 0 441 322 83 9 chr6 44775270 44775689 -137639553 - L1ME3 LINE L1 -1053 5093 4644 898 322 86 16 chr6 44775715 44776342 -137638900 - L1ME3 LINE L1 -1562 4584 3914 184 244 173 8 chr6 44776545 44776672 -137638570 - L2 LINE L2 -223 3049 2902 180 247 93 10 chr6 44776952 44777049 -137638193 - L2 LINE L2 -30 3242 3138 448 224 73 107 chr6 44777153 44777358 -137637884 + MIR SINE MIR 20 217 -45 196 169 299 0 chr6 44778882 44778959 -137636283 - MIR SINE MIR -76 132 33 205 213 98 33 chr6 44780157 44780218 -137635024 - L2 LINE L2 -2 3270 3206 644 213 7 7 chr6 44780910 44781051 -137634191 - MLT1F LTR MaLR 0 567 427 1307 227 40 54 chr6 44781162 44781589 -137633653 - MLT1F LTR MaLR -121 421 1 314 288 81 18 chr6 44783673 44783784 -137631458 - MIR SINE MIR -73 135 18 325 248 128 0 chr6 44783853 44783970 -137631272 - MIR SINE MIR -27 235 104 215 239 0 90 chr6 44785057 44785124 -137630118 - MIR SINE MIR -114 148 88 237 139 0 0 chr6 44785142 44785178 -137630064 + U2 snRNA snRNA 1 36 -152 425 315 39 8 chr6 44785627 44785754 -137629488 + MIR SINE MIR 20 150 -112 198 360 23 0 chr6 44786183 44786269 -137628973 - MIR SINE MIR -114 148 61 458 204 28 0 chr6 44787453 44787561 -137627681 + MIR SINE MIR 37 147 -61 484 242 39 8 chr6 44787827 44787955 -137627287 - L2 LINE L2 -5 3267 3136 514 254 239 10 chr6 44787997 44788198 -137627044 + MIR SINE MIR 13 259 -3 210 182 73 36 chr6 44789537 44789592 -137625650 - L3 LINE CR1 -4 1573 1517 366 23 0 0 chr6 44790053 44790096 -137625146 + (CA)n Simple_repeat Simple_repeat 2 44 0 326 265 116 48 chr6 44792693 44792840 -137622402 - MIR3 SINE MIR -21 187 31 246 156 0 0 chr6 44793495 44793540 -137621702 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 77 0 0 chr6 44796436 44796462 -137618780 + (TCTCTG)n Simple_repeat Simple_repeat 5 30 0 2274 81 3 0 chr6 44797816 44798111 -137617131 + AluSc SINE Alu 3 298 -11 582 240 92 28 chr6 44799311 44799528 -137615714 - L2 LINE L2 -191 3122 2892 859 194 88 0 chr6 44799533 44799703 -137615539 + MER58A DNA MER1_type 37 221 -3 569 212 151 0 chr6 44800177 44800332 -137614910 + MER5A DNA MER1_type 4 185 -4 482 238 64 29 chr6 44800418 44800590 -137614652 + L1ME4a LINE L1 5707 5884 -237 423 271 78 21 chr6 44800601 44800793 -137614449 + HAL1b LINE L1 719 921 -427 292 251 49 32 chr6 44801140 44801420 -137613822 + L1MC4a LINE L1 2147 2433 -3713 582 287 70 76 chr6 44801462 44801754 -137613488 + L1MC4a LINE L1 3688 3980 -2166 2131 120 3 0 chr6 44801754 44802062 -137613180 - AluSx SINE Alu -3 309 1 582 287 70 76 chr6 44802062 44802282 -137612960 + L1MC4a LINE L1 3980 4200 -1946 1773 154 0 7 chr6 44802282 44802602 -137612640 + AluSx SINE Alu 1 318 0 582 287 70 76 chr6 44802602 44803434 -137611808 + L1MC4a LINE L1 4200 5026 -1120 1706 248 85 15 chr6 44803589 44804186 -137611056 + L1MC4a LINE L1 5254 5892 -1916 481 350 49 63 chr6 44804195 44804626 -137610616 + L2 LINE L2 2827 3251 -21 180 111 0 0 chr6 44804626 44804653 -137610589 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 1859 130 62 7 chr6 44804711 44805003 -137610239 + AluSx SINE Alu 1 308 -4 234 170 0 19 chr6 44805239 44805292 -137609950 + L1ME4a LINE L1 6061 6112 -9 529 186 99 64 chr6 44805519 44805691 -137609551 - MER5A DNA MER1_type 0 189 12 324 365 183 3 chr6 44806837 44807149 -137608093 + L3b LINE CR1 1202 1569 -14 1245 71 65 0 chr6 44808365 44808535 -137606707 + MER1B DNA MER1_type 159 339 0 1826 140 4 0 chr6 44810149 44810428 -137604814 + AluSx SINE Alu 18 297 -15 305 364 74 0 chr6 44810515 44810691 -137604551 + L2 LINE L2 2618 2806 -508 544 270 118 5 chr6 44810788 44810992 -137604250 + MER112 DNA MER1_type 6 232 -28 200 254 124 89 chr6 44811687 44811856 -137603386 - L2 LINE L2 -419 2895 2721 457 234 154 53 chr6 44812049 44812237 -137603005 - MIR SINE MIR -26 236 30 579 240 62 159 chr6 44812483 44812949 -137602293 + L2 LINE L2 2893 3313 0 486 190 20 0 chr6 44813420 44813520 -137601722 - L1MA4A LINE L1 -456 5847 5746 491 284 24 47 chr6 44813521 44813732 -137601510 - L1MA5A LINE L1 -346 5951 5746 692 176 0 15 chr6 44813739 44813875 -137601367 - L1MA5 LINE L1 -421 5879 5746 442 281 0 0 chr6 44813873 44813987 -137601255 - L1MA5 LINE L1 -441 5859 5746 * 450 252 0 9 chr6 44813985 44814100 -137601142 - L1MA5 LINE L1 -441 5859 5746 393 261 46 8 chr6 44814104 44814233 -137601009 - L1MA4A LINE L1 -366 5817 5722 1015 243 48 11 chr6 44816914 44817186 -137598056 + L1MB7 LINE L1 5903 6184 0 27 0 0 0 chr6 44817188 44817215 -137598027 + AT_rich Low_complexity Low_complexity 1 27 0 588 260 42 0 chr6 44819609 44819772 -137595470 - L1ME3 LINE L1 -9 6161 5983 1680 231 83 123 chr6 44819914 44820774 -137594468 - L2 LINE L2 0 3313 2503 893 126 0 15 chr6 44820774 44820909 -137594333 + FLAM_C SINE Alu 1 133 0 1680 231 83 123 chr6 44820909 44821271 -137593971 - L2 LINE L2 -810 2503 2128 613 239 129 10 chr6 44821506 44821707 -137593535 - LTR33 LTR ERVL -5 516 292 295 159 43 14 chr6 44821730 44821799 -137593443 - LTR33 LTR ERVL -446 75 5 305 297 27 45 chr6 44821966 44822077 -137593165 + L3 LINE CR1 337 445 -1132 2222 121 111 30 chr6 44822197 44822377 -137592865 + MSTA LTR MaLR 1 165 -263 2001 138 0 0 chr6 44822377 44822673 -137592569 + AluSx SINE Alu 1 296 -16 2222 121 111 30 chr6 44822673 44822888 -137592354 + MSTA LTR MaLR 165 428 0 285 273 0 34 chr6 44822949 44823037 -137592205 + MLT1H LTR MaLR 91 175 -374 284 252 23 69 chr6 44823199 44823330 -137591912 + MLT1H LTR MaLR 425 549 0 599 278 48 53 chr6 44823400 44823774 -137591468 - L1M4 LINE L1 -2264 3882 3511 262 300 154 90 chr6 44823799 44824247 -137590995 + L3 LINE CR1 514 932 -645 2057 112 7 3 chr6 44824247 44824541 -137590701 - AluSx SINE Alu -17 295 1 262 300 154 90 chr6 44824541 44824689 -137590553 + L3 LINE CR1 932 1069 -508 1142 177 48 0 chr6 44824689 44824898 -137590344 - MER20 DNA MER1_type 0 219 1 262 300 154 90 chr6 44824898 44825019 -137590223 + L3 LINE CR1 1069 1278 -299 6265 102 7 0 chr6 44825019 44825884 -137589358 + HERVH LTR ERV1 5147 6017 -1696 3751 97 31 9 chr6 44825876 44826421 -137588821 + HERVH LTR ERV1 7157 7713 0 * 836 189 85 41 chr6 44826421 44826773 -137588469 + LTR7 LTR ERV1 1 410 -40 674 267 108 17 chr6 44826788 44827028 -137588214 + L3 LINE CR1 1263 1524 -53 1514 180 13 17 chr6 44827200 44827500 -137587742 - AluJo SINE Alu -13 299 1 1461 281 38 19 chr6 44827519 44827892 -137587350 + LTR16C LTR ERVL 103 482 -9 646 278 108 5 chr6 44828249 44828443 -137586799 - L2 LINE L2 -3 3269 3056 193 162 0 0 chr6 44828453 44828490 -137586752 - MIR SINE MIR -68 140 104 204 125 0 0 chr6 44829333 44829365 -137585877 + (TA)n Simple_repeat Simple_repeat 2 33 0 505 259 228 0 chr6 44829419 44829608 -137585634 - MIR SINE MIR 0 262 31 251 340 53 0 chr6 44829957 44830051 -137585191 + MIR SINE MIR 49 147 -115 2124 95 3 0 chr6 44830206 44830489 -137584753 + AluSx SINE Alu 1 333 0 388 41 0 0 chr6 44830489 44830538 -137584704 + (CAAA)n Simple_repeat Simple_repeat 2 140 0 2196 84 0 7 chr6 44830538 44830825 -137584417 + AluSq SINE Alu 1 317 0 216 31 31 0 chr6 44830825 44830857 -137584385 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2421 128 52 28 chr6 44832491 44832913 -137582329 - MSTB1 LTR MaLR 0 432 1 248 343 52 47 chr6 44833144 44833316 -137581926 - MER5B DNA MER1_type -5 173 1 219 257 89 59 chr6 44833799 44833900 -137581342 - MIR SINE MIR -52 210 107 1936 121 6 22 chr6 44833977 44834292 -137580950 + AluSx SINE Alu 1 310 -2 2518 119 58 23 chr6 44835399 44835834 -137579408 - LTR7 LTR ERV1 0 450 1 2877 75 43 30 chr6 44835834 44836273 -137578969 - HERVH LTR ERV1 0 7713 7269 * 11017 118 12 37 chr6 44836259 44838772 -137576470 - HERVH LTR ERV1 -2699 5014 2043 3943 143 15 28 chr6 44838762 44839449 -137575793 - HERVH LTR ERV1 -6235 1478 801 * 1982 198 46 27 chr6 44839476 44839958 -137575284 - HERVH LTR ERV1 -7254 459 1 2318 120 45 42 chr6 44839958 44840407 -137574835 - LTR7 LTR ERV1 0 450 1 229 231 0 19 chr6 44840470 44840522 -137574720 + MIR3 SINE MIR 121 171 -37 719 299 14 0 chr6 44840574 44840788 -137574454 - MER20 DNA MER1_type 0 219 3 218 288 159 105 chr6 44840880 44841137 -137574105 - L2 LINE L2 -86 3186 2916 24 0 0 0 chr6 44841525 44841549 -137573693 + AT_rich Low_complexity Low_complexity 1 24 0 471 252 53 15 chr6 44841684 44841815 -137573427 + MIR SINE MIR 7 142 -120 1401 233 106 67 chr6 44842138 44842799 -137572443 + HAL1 LINE L1 590 1276 -1231 1251 213 58 38 chr6 44843031 44843322 -137571920 + AluJb SINE Alu 1 297 -5 226 174 87 120 chr6 44843342 44843434 -137571808 + L1ME2 LINE L1 5961 6049 -115 775 230 50 10 chr6 44843879 44844079 -137571163 + LTR33 LTR ERVL 4 211 -310 405 264 16 8 chr6 44844073 44844202 -137571040 + LTR33 LTR ERVL 392 521 0 * 424 316 83 15 chr6 44845167 44845387 -137569855 + MIR SINE MIR 30 262 0 181 284 35 85 chr6 44845455 44845596 -137569646 + MIR3 SINE MIR 48 181 -27 440 289 64 21 chr6 44845650 44845837 -137569405 + MARNA DNA Mariner 39 233 -353 24 0 0 0 chr6 44845862 44845886 -137569356 + AT_rich Low_complexity Low_complexity 1 24 0 2178 103 7 0 chr6 44846110 44846412 -137568830 + AluSc SINE Alu 1 304 -5 225 0 0 0 chr6 44846430 44846455 -137568787 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 492 233 17 25 chr6 44846527 44846647 -137568595 + MARNA DNA Mariner 290 408 -178 356 244 100 56 chr6 44846813 44846973 -137568269 + MIR SINE MIR 30 196 -66 338 262 24 0 chr6 44847607 44847691 -137567551 + MER45B DNA AcHobo 1 86 -954 * 1122 155 28 114 chr6 44847685 44847783 -137567459 + MER45B DNA AcHobo 776 881 -700 1885 144 53 44 chr6 44847783 44848144 -137567098 - THE1B LTR MaLR 0 364 1 1122 155 28 114 chr6 44848144 44848159 -137567083 + MER45B DNA AcHobo 881 896 -685 669 202 0 0 chr6 44848159 44848273 -137566969 - FLAM_A SINE Alu -19 114 1 1122 155 28 114 chr6 44848273 44848448 -137566794 + MER45B DNA AcHobo 896 1040 0 574 193 6 117 chr6 44849096 44849267 -137565975 - MER103 DNA DNA -1 165 14 517 251 63 58 chr6 44849336 44849527 -137565715 + MIR SINE MIR 17 208 -54 507 299 38 0 chr6 44850755 44850912 -137564330 - MIR SINE MIR -13 249 87 1764 166 65 91 chr6 44850912 44851198 -137564044 + MLT2D LTR ERVL 1 274 -140 876 133 0 30 chr6 44851198 44851333 -137563909 - FLAM_C SINE Alu -1 132 2 1764 166 65 91 chr6 44851333 44851463 -137563779 + MLT2D LTR ERVL 274 406 -8 236 286 52 0 chr6 44851732 44851809 -137563433 - L2 LINE L2 -6 3266 3186 1926 130 3 7 chr6 44852143 44852457 -137562785 - AluSx SINE Alu 0 312 4 1120 248 42 39 chr6 44852838 44853173 -137562069 + L1MEc LINE L1 36 371 -6025 333 141 0 0 chr6 44853174 44853245 -137561997 + (TC)n Simple_repeat Simple_repeat 2 72 0 234 0 0 0 chr6 44853245 44853271 -137561971 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 294 50 0 0 chr6 44853270 44853310 -137561932 + (GA)n Simple_repeat Simple_repeat 2 41 0 465 235 42 54 chr6 44853316 44853482 -137561760 + L1MEc LINE L1 385 548 -5848 1130 204 25 60 chr6 44853485 44853838 -137561404 + L1ME1 LINE L1 5824 6164 -2 749 321 62 25 chr6 44853860 44854380 -137560862 + HAL1b LINE L1 120 658 -690 543 261 63 36 chr6 44854836 44855169 -137560073 + L1MC4 LINE L1 7701 8042 0 2064 122 7 0 chr6 44855388 44855684 -137559558 - AluSg SINE Alu -12 298 1 370 191 15 0 chr6 44856652 44856720 -137558522 - MER45B DNA AcHobo 0 1040 972 1150 163 0 56 chr6 44856721 44856954 -137558288 + AluJb SINE Alu 87 306 -6 3169 181 32 55 chr6 44856954 44857132 -137558110 - MER45B DNA AcHobo -619 962 781 1560 171 25 4 chr6 44857132 44857412 -137557830 - AluJo SINE Alu -26 286 1 3169 181 32 55 chr6 44857412 44857962 -137557280 - MER45B DNA AcHobo -800 781 251 706 182 30 0 chr6 44857968 44858100 -137557142 - MER45B DNA AcHobo -904 136 1 195 42 0 0 chr6 44858729 44858753 -137556489 + (T)n Simple_repeat Simple_repeat 1 24 0 1914 144 3 6 chr6 44858892 44859204 -137556038 - AluJb SINE Alu -1 311 1 404 299 36 7 chr6 44859718 44859855 -137555387 + MER5B DNA MER1_type 38 178 0 323 228 219 26 chr6 44859855 44859969 -137555273 - MIR3 SINE MIR -48 160 25 1938 142 3 16 chr6 44860201 44860510 -137554732 - AluJb SINE Alu -7 305 1 409 245 20 0 chr6 44861240 44861338 -137553904 - MIR3 SINE MIR 0 208 109 610 260 107 6 chr6 44861443 44861620 -137553622 - MER91A DNA MER1_type -1 195 1 2168 57 28 0 chr6 44862404 44862686 -137552556 + AluY SINE Alu 2 291 -20 227 274 0 0 chr6 44862927 44862978 -137552264 - Charlie4 DNA MER1_type -1910 51 1 1143 30 0 0 chr6 44863236 44863368 -137551874 + AluSp SINE Alu 1 132 -181 2265 75 10 0 chr6 44863370 44863665 -137551577 + AluSp SINE Alu 1 298 -15 2648 204 52 51 chr6 44865141 44865431 -137549811 + L1ME1 LINE L1 4615 4903 -1263 915 131 8 0 chr6 44865431 44865561 -137549681 + FLAM_C SINE Alu 1 131 -2 2648 204 52 51 chr6 44865561 44865979 -137549263 + L1ME1 LINE L1 4903 5319 -847 2367 90 0 0 chr6 44865979 44866290 -137548952 + AluY SINE Alu 1 311 0 2648 204 52 51 chr6 44866290 44866783 -137548459 + L1ME1 LINE L1 5319 5819 -347 2015 127 0 0 chr6 44866783 44867113 -137548129 + AluSx SINE Alu 1 330 0 2648 204 52 51 chr6 44867113 44867251 -137547991 + L1ME1 LINE L1 5819 5955 -211 1372 217 129 35 chr6 44867256 44867713 -137547529 + MLT1D LTR MaLR 6 505 0 226 69 0 0 chr6 44867713 44867742 -137547500 + L1ME1 LINE L1 5951 5979 -187 330 251 9 25 chr6 44867756 44867881 -137547361 + L1ME1 LINE L1 6047 6159 -20 198 67 0 0 chr6 44867881 44867897 -137547345 + (CAAT)n Simple_repeat Simple_repeat 3 21 -11 2003 133 3 0 chr6 44867897 44868191 -137547051 + AluSx SINE Alu 1 295 -17 198 67 0 0 chr6 44868191 44868204 -137547038 + (CAAT)n Simple_repeat Simple_repeat 20 32 0 194 265 44 73 chr6 44868335 44868471 -137546771 - L2 LINE L2 -897 2417 2286 427 217 174 7 chr6 44868559 44868697 -137546545 + MIR SINE MIR 75 235 -27 956 118 35 98 chr6 44868922 44869125 -137546117 - MLT1C LTR MaLR 0 467 278 874 135 12 82 chr6 44869125 44869276 -137545966 + MLT1D-int LTR MaLR 22 182 -1189 1573 139 23 62 chr6 44869276 44869585 -137545657 - AluSq SINE Alu -15 298 2 874 135 12 82 chr6 44869585 44869676 -137545566 + MLT1D-int LTR MaLR 182 357 -1014 383 242 68 71 chr6 44870064 44870220 -137545022 - MIR SINE MIR -63 145 29 319 330 68 0 chr6 44870960 44871078 -137544164 - L2 LINE L2 -2 3270 3145 381 113 198 10 chr6 44874354 44874440 -137540802 + MER5A DNA MER1_type 4 109 -80 425 284 92 40 chr6 44874644 44874949 -137540293 - L2 LINE L2 0 3272 2858 207 218 282 51 chr6 44875085 44875163 -137540079 + MIR SINE MIR 47 142 -66 1425 250 163 9 chr6 44875263 44875687 -137539555 - MLT1J LTR MaLR -22 489 1 753 188 119 35 chr6 44876352 44876554 -137538688 - MER20 DNA MER1_type 0 219 1 189 147 0 0 chr6 44876610 44876644 -137538598 + (GA)n Simple_repeat Simple_repeat 1 34 0 218 336 18 9 chr6 44876649 44876759 -137538483 + GA-rich Low_complexity Low_complexity 1 111 0 440 236 144 92 chr6 44877166 44877577 -137537665 + HAL1 LINE L1 43 474 -2033 416 259 92 35 chr6 44877586 44877760 -137537482 + HAL1 LINE L1 540 723 -1784 2215 145 23 41 chr6 44877813 44877993 -137537249 + Tigger2a DNA MER2_type 1 183 -2525 1997 107 45 0 chr6 44877993 44878282 -137536960 + AluSg1 SINE Alu 1 302 -7 2215 145 23 41 chr6 44878282 44878493 -137536749 + Tigger2a DNA MER2_type 183 385 -49 239 125 0 0 chr6 44878607 44878639 -137536603 + Tigger2a DNA MER2_type 413 444 0 565 277 64 96 chr6 44878642 44878778 -137536464 + HAL1 LINE L1 810 934 -1573 1863 113 0 0 chr6 44878778 44879043 -137536199 + AluY SINE Alu 38 302 -9 565 277 64 96 chr6 44879043 44879188 -137536054 + HAL1 LINE L1 934 1082 -1425 2247 88 14 0 chr6 44879188 44879485 -137535757 + AluSx SINE Alu 1 301 -11 1903 104 83 4 chr6 44879515 44879793 -137535449 + AluSq SINE Alu 1 300 -13 273 249 102 40 chr6 44879834 44880051 -137535191 + L1MC4 LINE L1 7527 7710 -98 606 110 0 0 chr6 44880074 44880165 -137535077 + L1PB3 LINE L1 6064 6154 0 1250 160 92 24 chr6 44880267 44880561 -137534681 + MER33 DNA MER1_type 10 323 -1 261 254 142 15 chr6 44880696 44880830 -137534412 + HAL1 LINE L1 1069 1219 -1288 2538 247 94 36 chr6 44880856 44882004 -137533238 + HAL1 LINE L1 1306 2507 0 223 338 15 0 chr6 44882465 44882533 -137532709 - L3 LINE CR1 -84 1493 1425 183 259 93 0 chr6 44882569 44882623 -137532619 + L2 LINE L2 2904 2962 -310 471 194 110 110 chr6 44882746 44882901 -137532341 + MSTC LTR MaLR 1 155 -277 226 359 0 0 chr6 44883470 44883534 -137531708 - L2 LINE L2 0 3313 3250 509 267 16 84 chr6 44883570 44883761 -137531481 + MER5B DNA MER1_type 1 178 0 313 214 214 48 chr6 44883761 44883888 -137531354 - MIR3 SINE MIR -40 168 18 450 309 73 0 chr6 44884722 44884887 -137530355 + LTR16B LTR ERVL 124 300 -164 301 275 0 12 chr6 44884935 44885015 -137530227 + LTR16B LTR ERVL 381 459 -5 450 49 0 0 chr6 44885093 44885154 -137530088 + (CA)n Simple_repeat Simple_repeat 1 61 0 188 250 0 0 chr6 44885209 44885257 -137529985 + MIR SINE MIR 201 248 -14 1814 219 44 30 chr6 44886068 44886498 -137528744 + MER63B DNA MER1_type 1 436 0 274 242 0 16 chr6 44886899 44886961 -137528281 + MER5A DNA MER1_type 71 131 -58 286 258 346 0 chr6 44887126 44887308 -137527934 + MIR SINE MIR 14 258 -4 566 204 121 0 chr6 44887698 44887830 -137527412 - MLT1G1 LTR MaLR 0 595 448 688 243 50 81 chr6 44887870 44888007 -137527235 - MLT1G1 LTR MaLR -284 311 171 1888 87 50 40 chr6 44888007 44888307 -137526935 + AluY SINE Alu 1 303 -8 246 32 0 0 chr6 44888307 44888338 -137526904 + (CA)n Simple_repeat Simple_repeat 2 32 0 688 243 50 81 chr6 44888338 44888520 -137526722 - MLT1G1 LTR MaLR -422 173 1 562 284 82 16 chr6 44888542 44888785 -137526457 + LTR16C LTR ERVL 168 426 -65 189 291 42 91 chr6 44889561 44889846 -137525396 - L2 LINE L2 -182 3090 2820 324 224 40 0 chr6 44889935 44890011 -137525231 - L2 LINE L2 0 3313 3235 295 226 161 16 chr6 44890624 44890748 -137524494 + MIR SINE MIR 67 208 -54 2073 95 14 3 chr6 44890924 44891220 -137524022 + AluSx SINE Alu 1 299 -13 513 237 126 56 chr6 44892293 44892508 -137522734 + MIR SINE MIR 10 239 -23 2010 117 37 3 chr6 44895841 44896140 -137519102 + AluSx SINE Alu 1 309 -3 195 306 0 0 chr6 44898765 44898814 -137516428 + L2 LINE L2 3139 3187 -85 489 226 162 58 chr6 44898896 44899375 -137515867 + MLT1G1 LTR MaLR 1 595 0 389 263 223 23 chr6 44899856 44900031 -137515211 - MIR SINE MIR -34 228 19 785 148 142 24 chr6 44900037 44900206 -137515036 - MER5A DNA MER1_type 0 189 1 1362 325 124 31 chr6 44901662 44902628 -137512614 + L3 LINE CR1 85 1140 -437 330 175 79 0 chr6 44902830 44902893 -137512349 - L2 LINE L2 -37 3276 3209 380 239 18 51 chr6 44902896 44903042 -137512200 + MER20B DNA MER1_type 64 210 -9 441 321 85 18 chr6 44904175 44904399 -137510843 - MIR SINE MIR -13 249 11 2224 98 3 3 chr6 44905054 44905361 -137509881 - AluSx SINE Alu -4 308 2 338 233 200 83 chr6 44905561 44905777 -137509465 - MIR SINE MIR 0 262 19 600 211 23 23 chr6 44905861 44905989 -137509253 + L2 LINE L2 3186 3313 0 265 317 58 19 chr6 44906647 44906751 -137508491 + MIR SINE MIR 34 141 -121 360 237 178 0 chr6 44907485 44907620 -137507622 - MER5B DNA MER1_type 0 178 20 273 292 92 0 chr6 44908104 44908224 -137507018 + MIR3 SINE MIR 45 175 -33 646 251 0 39 chr6 44908324 44908503 -137506739 - MER5B DNA MER1_type -6 172 1 188 267 150 0 chr6 44909847 44909907 -137505335 - MIR SINE MIR -89 173 105 331 297 111 22 chr6 44910487 44910710 -137504532 + MIR SINE MIR 7 250 -12 330 311 219 15 chr6 44910942 44911212 -137504030 + L2 LINE L2 2987 3311 -2 524 194 0 54 chr6 44912289 44912418 -137502824 - L3b LINE CR1 -194 1389 1268 2081 127 0 3 chr6 44912619 44912918 -137502324 + AluSx SINE Alu 1 298 -14 273 288 136 8 chr6 44914417 44914535 -137500707 - L2 LINE L2 -4 3268 3136 534 149 216 0 chr6 44915350 44915484 -137499758 + MER3 DNA MER1_type 2 164 -45 2241 120 0 0 chr6 44915493 44915801 -137499441 + AluSq SINE Alu 1 308 -5 1968 125 0 7 chr6 44915817 44916114 -137499128 + AluSx SINE Alu 1 295 -17 464 174 13 31 chr6 44916810 44916920 -137498322 + MER8 DNA MER2_type 11 117 -122 801 146 0 0 chr6 44917520 44917630 -137497612 + AluSg SINE Alu 2 111 -199 1593 105 0 5 chr6 44917631 44917850 -137497392 + AluSg/x SINE Alu 76 293 -17 303 192 97 35 chr6 44918791 44918916 -137496326 - MIR SINE MIR -89 119 27 2093 95 0 7 chr6 44919813 44920127 -137495115 + AluSx SINE Alu 1 312 0 448 270 125 0 chr6 44920366 44920518 -137494724 + MIR SINE MIR 21 191 -71 2226 89 6 10 chr6 44920650 44920963 -137494279 + AluSp SINE Alu 2 313 0 217 298 160 22 chr6 44921046 44921227 -137494015 - L2 LINE L2 -429 2885 2680 286 266 94 47 chr6 44921363 44921491 -137493751 + MIR3 SINE MIR 66 199 -9 2177 111 0 0 chr6 44921881 44922179 -137493063 - AluSg SINE Alu -12 298 1 221 185 19 37 chr6 44922794 44922848 -137492394 + L2 LINE L2 3255 3307 -6 326 161 7 7 chr6 44923293 44923368 -137491874 + Alu SINE Alu 246 301 0 197 275 84 70 chr6 44924602 44924744 -137490498 - MIR SINE MIR -21 241 98 460 361 5 23 chr6 44924892 44925111 -137490131 + MIR SINE MIR 48 262 0 292 312 200 6 chr6 44925191 44925361 -137489881 + MIR SINE MIR 50 252 -10 504 202 40 0 chr6 44926208 44926307 -137488935 - L1M3 LINE L1 -684 5650 5548 1279 180 40 15 chr6 44926307 44926576 -137488666 + L1MB2 LINE L1 5892 6170 -1 275 241 0 0 chr6 44926699 44926753 -137488489 - MIR SINE MIR 0 262 209 692 122 0 35 chr6 44928415 44928530 -137486712 - AluJb SINE Alu 0 312 202 279 290 0 0 chr6 44928727 44928789 -137486453 + L2 LINE L2 3242 3303 -10 213 328 224 22 chr6 44928793 44928976 -137486266 + MIR SINE MIR 25 244 -18 207 284 159 0 chr6 44929560 44929648 -137485594 - MIR SINE MIR -118 144 43 184 250 68 0 chr6 44929674 44929718 -137485524 + L2 LINE L2 3210 3256 -16 237 132 0 0 chr6 44933551 44933589 -137481653 + (TTTTC)n Simple_repeat Simple_repeat 5 42 0 2354 78 7 0 chr6 44933601 44933896 -137481346 - AluSx SINE Alu -15 297 1 476 293 107 37 chr6 44933914 44934047 -137481195 + L2 LINE L2 3055 3177 -136 405 0 0 0 chr6 44934047 44934092 -137481150 + (CA)n Simple_repeat Simple_repeat 1 45 0 476 293 107 37 chr6 44934092 44934200 -137481042 + L2 LINE L2 3177 3313 0 192 200 0 0 chr6 44935527 44935577 -137479665 + C-rich Low_complexity Low_complexity 1 50 0 1504 119 105 93 chr6 44935911 44936044 -137479198 + MER4D LTR ERV1 1 131 -772 2065 138 0 3 chr6 44936044 44936341 -137478901 - AluSx SINE Alu -16 296 1 1504 119 105 93 chr6 44936341 44936423 -137478819 + MER4D LTR ERV1 131 211 -692 1549 116 18 13 chr6 44936423 44936647 -137478595 + AluSg/x SINE Alu 84 308 -2 1504 119 105 93 chr6 44936647 44936774 -137478468 + MER4D LTR ERV1 211 348 -555 1250 134 14 5 chr6 44936800 44937152 -137478090 + MER4E LTR ERV1 338 779 0 186 195 39 117 chr6 44937167 44937244 -137477998 - MER5B DNA MER1_type -32 146 76 2651 43 0 0 chr6 44937434 44937738 -137477504 + AluY SINE Alu 1 304 -7 2003 150 7 0 chr6 44938081 44938387 -137476855 - AluSx SINE Alu 0 312 5 1827 163 35 52 chr6 44938591 44938628 -137476614 + L1MB2 LINE L1 5773 5809 -362 1931 113 76 0 chr6 44938628 44938903 -137476339 - AluSx SINE Alu -16 296 1 1827 163 35 52 chr6 44938903 44939271 -137475971 + L1MB2 LINE L1 5809 6171 0 508 191 77 24 chr6 44940297 44940484 -137474758 - MIR SINE MIR -50 212 14 2307 113 0 0 chr6 44940918 44941218 -137474024 - AluSx SINE Alu -12 300 1 647 251 77 0 chr6 44941218 44941425 -137473817 + Charlie4a DNA MER1_type 106 328 -180 801 129 0 0 chr6 44941429 44941545 -137473697 + AluSg/x SINE Alu 175 290 -20 2288 106 3 3 chr6 44941568 44941869 -137473373 - AluSq SINE Alu -12 301 1 274 221 12 12 chr6 44941938 44942024 -137473218 + (TA)n Simple_repeat Simple_repeat 1 86 0 1935 155 0 14 chr6 44942024 44942321 -137472921 - AluSx SINE Alu -19 293 1 362 188 0 119 chr6 44942324 44942361 -137472881 + Charlie4a DNA MER1_type 404 444 -1517 1996 137 14 0 chr6 44942361 44942654 -137472588 + AluSx SINE Alu 1 297 -15 362 188 0 119 chr6 44942654 44942717 -137472525 + Charlie4a DNA MER1_type 444 492 -16 189 306 74 0 chr6 44942805 44942926 -137472316 - L2 LINE L2 -683 2631 2502 559 292 72 5 chr6 44943751 44943946 -137471296 - MIR SINE MIR -15 247 40 447 268 86 62 chr6 44944332 44944541 -137470701 + L1MC5 LINE L1 7201 7414 -547 1273 132 66 0 chr6 44944590 44944787 -137470455 - AluSc SINE Alu 0 309 100 810 133 0 0 chr6 44944865 44944970 -137470272 + AluSg SINE Alu 1 105 -205 1877 97 0 0 chr6 44944971 44945208 -137470034 - AluSg SINE Alu -73 237 1 260 93 93 0 chr6 44945208 44945251 -137469991 - AluJo SINE Alu -166 136 90 769 209 68 56 chr6 44945439 44945688 -137469554 + ORSL DNA AcHobo 1 252 -23 1196 152 18 0 chr6 44945934 44946151 -137469091 + L1MA8 LINE L1 6071 6291 0 2411 92 0 3 chr6 44946157 44946463 -137468779 + AluSx SINE Alu 1 305 -7 233 289 24 48 chr6 44946512 44946595 -137468647 + L2 LINE L2 3145 3225 -47 193 361 77 11 chr6 44946808 44946991 -137468251 - L2 LINE L2 -908 2406 2212 820 186 28 34 chr6 44947679 44947856 -137467386 - FRAM SINE Alu -1 175 1 26 30 0 0 chr6 44947858 44947891 -137467351 + AT_rich Low_complexity Low_complexity 1 33 0 284 158 0 53 chr6 44947931 44947988 -137467254 - AluSp SINE Alu -119 184 131 2111 100 14 10 chr6 44948262 44948587 -137466655 + AluSx SINE Alu 1 312 0 2284 121 0 13 chr6 44948700 44949015 -137466227 - AluSx SINE Alu -1 311 1 2348 94 3 0 chr6 44949320 44949619 -137465623 - AluSc SINE Alu -6 303 4 550 125 0 0 chr6 44949722 44949843 -137465399 + AluSg/x SINE Alu 214 334 0 1828 148 3 7 chr6 44949843 44950167 -137465075 + AluSx SINE Alu 1 323 0 2532 61 3 0 chr6 44950454 44950751 -137464491 - AluY SINE Alu -11 300 3 737 227 12 12 chr6 44951320 44951501 -137463741 + MIR SINE MIR 62 241 -21 183 204 0 0 chr6 44951526 44951570 -137463672 + (ATG)n Simple_repeat Simple_repeat 2 45 0 1222 137 0 52 chr6 44951576 44951651 -137463591 - MLT1C LTR MaLR 0 467 390 2312 104 7 0 chr6 44951651 44951950 -137463292 + AluSq SINE Alu 1 301 -12 1222 137 0 52 chr6 44951950 44952086 -137463156 - MLT1C LTR MaLR -77 390 267 1368 65 91 0 chr6 44952094 44952293 -137462949 + MSTC LTR MaLR 1 217 -211 1809 110 4 0 chr6 44952343 44952579 -137462663 - AluSx SINE Alu -15 297 61 488 133 0 0 chr6 44952595 44952670 -137462572 - MLT1C LTR MaLR 0 467 393 1238 93 0 0 chr6 44952670 44952821 -137462421 + AluSq/x SINE Alu 1 151 -161 267 135 0 0 chr6 44952821 44952858 -137462384 - Alu SINE Alu -252 50 14 4541 146 27 48 chr6 44952877 44953765 -137461477 - MER49 LTR ERV1 -50 873 5 1226 156 4 36 chr6 44953768 44953993 -137461249 + MSTC LTR MaLR 211 428 0 1257 123 66 29 chr6 44953994 44954237 -137461005 - MLT1C LTR MaLR -215 252 1 264 130 0 0 chr6 44954238 44954284 -137460958 + (ATG)n Simple_repeat Simple_repeat 2 47 0 805 262 95 49 chr6 44954378 44954725 -137460517 + L2 LINE L2 2951 3313 0 502 195 62 0 chr6 44955389 44955517 -137459725 - L1MC4 LINE L1 -2 8040 7905 1440 98 117 57 chr6 44955562 44955826 -137459416 - L1PA8A LINE L1 0 6131 5852 6487 119 1 44 chr6 44955833 44956915 -137458327 - L1PA8A LINE L1 -1289 4857 3776 1092 240 99 40 chr6 44956915 44956989 -137458253 - L1MC4 LINE L1 -67 7975 7907 1534 210 0 31 chr6 44956989 44957308 -137457934 - AluJo SINE Alu -3 309 1 1092 240 99 40 chr6 44957308 44958402 -137456840 - L1MC4 LINE L1 -135 7907 3769 180 111 0 0 chr6 44958403 44958430 -137456812 + (CA)n Simple_repeat Simple_repeat 2 28 0 2800 225 8 12 chr6 44958461 44959066 -137456176 + MER82 DNA MER2_type 50 652 -1 2311 116 0 0 chr6 44959066 44959359 -137455883 + AluSx SINE Alu 1 293 -19 514 157 78 157 chr6 44959366 44959456 -137455786 - L1MC4 LINE L1 -1344 6698 6603 2455 76 0 19 chr6 44959456 44959771 -137455471 + AluSc SINE Alu 1 309 0 514 157 78 157 chr6 44959771 44959935 -137455307 - L1MC4 LINE L1 -1439 6603 6464 213 158 184 53 chr6 44960128 44960204 -137455038 - MIR SINE MIR -103 159 74 663 238 11 28 chr6 44960244 44960425 -137454817 + MER5B DNA MER1_type 1 178 0 2110 104 9 48 chr6 44960426 44960742 -137454500 - AluSc SINE Alu -4 305 2 432 273 47 20 chr6 44960743 44960893 -137454349 + MIR SINE MIR 21 174 -88 2224 121 0 3 chr6 44960913 44961210 -137454032 - AluSx SINE Alu -16 296 1 202 216 59 39 chr6 44961389 44961461 -137453781 + L2 LINE L2 2995 3067 -205 851 166 7 33 chr6 44961509 44961660 -137453582 - AluJo SINE Alu -30 282 136 1716 206 63 29 chr6 44961662 44962151 -137453091 - L1MB4 LINE L1 -30 6150 5645 2328 89 0 10 chr6 44962156 44962458 -137452784 + AluSx SINE Alu 1 299 -13 927 197 47 26 chr6 44962796 44962989 -137452253 - AluJo SINE Alu -7 305 109 626 220 8 23 chr6 44963028 44963160 -137452082 - AluJo SINE Alu -172 130 1 270 294 134 8 chr6 44963320 44963439 -137451803 + L2 LINE L2 2922 3055 -217 847 296 48 9 chr6 44963768 44964099 -137451143 - L1MC4a LINE L1 -1908 5900 5557 184 250 234 0 chr6 44964290 44964354 -137450888 - L2 LINE L2 -43 3229 3151 297 227 67 27 chr6 44965780 44965855 -137449387 + MIR3 SINE MIR 84 161 -47 1685 173 16 13 chr6 44966347 44966654 -137448588 + AluJo SINE Alu 1 308 -4 1152 242 17 70 chr6 44967356 44967631 -137447611 - L1MB4 LINE L1 -743 5403 5394 2639 31 0 0 chr6 44967631 44967922 -137447320 + AluY SINE Alu 7 297 -14 1152 242 17 70 chr6 44967922 44968214 -137447028 - L1MB4 LINE L1 -752 5394 5088 1541 168 9 56 chr6 44968241 44968452 -137446790 + Tigger3b DNA MER2_type 2 194 -2835 2211 109 0 13 chr6 44968452 44968755 -137446487 + AluSg SINE Alu 1 299 -11 1541 168 9 56 chr6 44968755 44968864 -137446378 + Tigger3b DNA MER2_type 194 307 -2722 786 221 0 0 chr6 44968874 44969014 -137446228 - FLAM_A SINE Alu -2 140 1 4908 107 33 38 chr6 44969095 44969344 -137445898 + Tigger3b DNA MER2_type 337 586 -2442 2214 106 0 10 chr6 44969344 44969646 -137445596 - AluSx SINE Alu -13 299 1 4908 107 33 38 chr6 44969646 44970275 -137444967 + Tigger3b DNA MER2_type 586 1211 -20 23 0 0 0 chr6 44970285 44970308 -137444934 + AT_rich Low_complexity Low_complexity 1 23 0 1874 114 39 23 chr6 44970419 44970726 -137444516 - MER39B LTR ERV1 -284 369 58 2272 117 0 0 chr6 44971176 44971474 -137443768 - AluSc SINE Alu -11 298 1 315 261 51 51 chr6 44971514 44971671 -137443571 + MER69A DNA AcHobo 2 158 -19 21 0 0 0 chr6 44972702 44972723 -137442519 + AT_rich Low_complexity Low_complexity 1 21 0 2305 91 0 0 chr6 44972934 44973255 -137441987 + AluSx SINE Alu 1 321 0 1455 251 22 33 chr6 44973258 44973354 -137441888 + L1ME3A LINE L1 5557 5653 -517 3821 148 30 11 chr6 44973354 44973995 -137441247 + MER39B LTR ERV1 1 653 0 1455 251 22 33 chr6 44973995 44974348 -137440894 + L1ME3A LINE L1 5653 6001 -169 615 273 86 72 chr6 44974657 44975005 -137440237 - L2 LINE L2 -28 3244 2892 232 234 0 0 chr6 44975120 44975167 -137440075 + CT-rich Low_complexity Low_complexity 2 48 0 281 132 0 19 chr6 44975168 44975221 -137440021 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 2167 135 0 6 chr6 44975267 44975578 -137439664 - AluSx SINE Alu -3 309 1 333 306 63 0 chr6 44975604 44975715 -137439527 + L2 LINE L2 3193 3310 -3 * 374 256 234 49 chr6 44975690 44975998 -137439244 - L2 LINE L2 -10 3262 2898 2351 104 0 0 chr6 44976337 44976634 -137438608 - AluSg SINE Alu -13 297 1 2057 132 3 10 chr6 44976643 44976946 -137438296 - AluSx SINE Alu -11 301 1 378 239 119 0 chr6 44977526 44977635 -137437607 + L2 LINE L2 3192 3313 0 346 235 182 0 chr6 44977744 44977801 -137437441 + MER96 DNA MER1_type? 1 46 -129 2227 130 0 3 chr6 44977801 44978102 -137437140 + AluSq SINE Alu 1 300 -13 346 235 182 0 chr6 44978102 44978176 -137437066 + MER96 DNA MER1_type? 46 156 -19 185 270 190 10 chr6 44978479 44978579 -137436663 + L2 LINE L2 3155 3272 0 336 315 125 11 chr6 44978952 44979136 -137436106 + MIR SINE MIR 57 261 -1 2302 106 3 0 chr6 44979582 44979883 -137435359 + AluSx SINE Alu 11 312 0 358 311 0 78 chr6 44979965 44980132 -137435110 + L1ME4a LINE L1 5944 6097 -24 2102 159 30 19 chr6 44980928 44981299 -137433943 + THE1C LTR MaLR 1 375 0 433 297 38 26 chr6 44981303 44981459 -137433783 + MIR SINE MIR 21 152 -56 337 276 103 26 chr6 44981842 44981998 -137433244 - L3 LINE CR1 -835 742 575 2150 145 0 19 chr6 44982189 44982506 -137432736 - AluSx SINE Alu -1 311 1 515 280 117 15 chr6 44982686 44982906 -137432336 + MIR SINE MIR 1 234 -28 584 279 240 10 chr6 44986913 44987329 -137427913 + MLT1G1 LTR MaLR 1 512 -83 2196 126 0 0 chr6 44987539 44987849 -137427393 + AluSx SINE Alu 1 310 -2 226 290 32 54 chr6 44987942 44988035 -137427207 + L2 LINE L2 3223 3313 0 466 264 78 0 chr6 44988151 44988280 -137426962 - MIR3 SINE MIR -63 145 7 2030 142 7 3 chr6 44988349 44988658 -137426584 - AluSx SINE Alu -2 310 1 446 346 149 27 chr6 44989048 44989450 -137425792 - L2 LINE L2 -404 2910 2460 207 321 189 0 chr6 44989448 44989554 -137425688 - L2 LINE L2 0 3313 3188 * 625 161 0 50 chr6 44989561 44989693 -137425549 - L1MB8 LINE L1 0 6178 6054 1616 186 3 7 chr6 44989693 44989989 -137425253 - AluJb SINE Alu -17 295 1 625 161 0 50 chr6 44989989 44990017 -137425225 - L1MB8 LINE L1 -124 6054 6026 2318 82 30 0 chr6 44990017 44990321 -137424921 + AluSp SINE Alu 1 313 0 2207 94 0 38 chr6 44990348 44990666 -137424576 - AluSx SINE Alu -6 306 1 283 236 9 82 chr6 44990672 44990782 -137424460 - L1MB8 LINE L1 -166 6012 5911 750 266 35 51 chr6 44990800 44991116 -137424126 + MLT1J LTR MaLR 1 311 -200 357 374 53 0 chr6 44991151 44991341 -137423901 - L2 LINE L2 -1040 2274 2075 200 291 70 90 chr6 44991736 44991980 -137423262 - L2 LINE L2 -1203 2111 1873 189 107 0 0 chr6 44992343 44992371 -137422871 + (GA)n Simple_repeat Simple_repeat 1 28 0 270 212 91 0 chr6 44992460 44992526 -137422716 - MLT1H LTR MaLR -475 74 3 1598 211 54 48 chr6 44992537 44993034 -137422208 - LTR29 LTR ERV1 0 622 123 403 236 18 18 chr6 44993029 44993139 -137422103 - MLT1J LTR MaLR -237 274 165 * 880 296 34 19 chr6 44993156 44993579 -137421663 + MLT1J LTR MaLR 33 511 0 407 284 24 0 chr6 44993579 44993705 -137421537 - MLT1J LTR MaLR -342 169 41 460 289 39 82 chr6 44993744 44993891 -137421351 - MIR SINE MIR 0 262 129 2358 81 10 0 chr6 44993891 44994199 -137421043 + AluSp SINE Alu 1 311 -2 460 289 39 82 chr6 44994199 44994307 -137420935 - MIR SINE MIR -133 129 18 705 196 159 0 chr6 44994309 44994472 -137420770 + MER5A DNA MER1_type 1 189 0 821 260 62 12 chr6 44994957 44995199 -137420043 - MIR SINE MIR -1 261 8 186 118 0 0 chr6 44995235 44995269 -137419973 + (T)n Simple_repeat Simple_repeat 1 34 0 327 49 0 0 chr6 44995428 44995469 -137419773 + (TG)n Simple_repeat Simple_repeat 1 41 0 223 161 16 32 chr6 44995975 44996037 -137419205 + CT-rich Low_complexity Low_complexity 5 65 0 836 282 94 13 chr6 44996550 44996859 -137418383 + LTR16C LTR ERVL 156 489 -2 498 221 45 58 chr6 44996872 44997026 -137418216 - MIR SINE MIR -21 241 90 311 174 47 0 chr6 44997101 44997187 -137418055 - MIR SINE MIR -97 111 46 256 304 0 43 chr6 44997295 44997387 -137417855 - L2 LINE L2 -46 3226 3139 398 283 69 0 chr6 44997722 44997895 -137417347 - LTR33 LTR ERVL -3 518 334 373 299 89 0 chr6 44997933 44998090 -137417152 - LTR33 LTR ERVL -275 246 76 417 307 64 7 chr6 44998554 44998694 -137416548 - MIR SINE MIR -82 180 33 206 146 0 24 chr6 44999618 44999659 -137415583 + (GA)n Simple_repeat Simple_repeat 1 40 0 326 245 61 10 chr6 44999790 44999888 -137415354 - MIR3 SINE MIR -40 168 66 528 227 49 37 chr6 44999973 45000136 -137415106 + MIR SINE MIR 88 252 -10 185 91 0 30 chr6 45000143 45000176 -137415066 + (TAA)n Simple_repeat Simple_repeat 2 33 0 489 338 92 22 chr6 45000608 45000836 -137414406 - MIR SINE MIR -1 261 18 1330 275 55 23 chr6 45002492 45002979 -137412263 - MLT1J LTR MaLR -8 503 1 878 132 16 89 chr6 45003518 45003655 -137411587 + MER5A DNA MER1_type 1 123 -66 2055 92 3 7 chr6 45003655 45003958 -137411284 - AluSx SINE Alu 0 302 1 878 132 16 89 chr6 45003958 45004009 -137411233 + MER5A DNA MER1_type 123 176 -13 573 272 15 0 chr6 45004486 45004622 -137410620 + MIR SINE MIR 125 262 0 366 276 0 29 chr6 45005508 45005613 -137409629 + MIR SINE MIR 45 146 -62 297 314 49 10 chr6 45006042 45006144 -137409098 - MER91C DNA MER1_type -34 106 1 239 247 65 13 chr6 45006426 45006503 -137408739 - MIR3 SINE MIR -22 186 106 449 279 130 13 chr6 45006521 45006675 -137408567 + MIR SINE MIR 20 191 -71 285 351 58 41 chr6 45008310 45008481 -137406761 - MIR SINE MIR -6 256 83 1103 295 57 2 chr6 45008543 45008950 -137406292 + LTR16B LTR ERVL 36 464 0 367 325 130 62 chr6 45009277 45009578 -137405664 + L2 LINE L2 2850 3184 -88 2350 80 0 0 chr6 45009578 45009878 -137405364 - AluSx SINE Alu -12 300 1 367 325 130 62 chr6 45009878 45009960 -137405282 + L2 LINE L2 3184 3259 -13 191 88 29 0 chr6 45009960 45009994 -137405248 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 350 258 0 43 chr6 45010196 45010289 -137404953 + MIR SINE MIR 21 109 -153 2227 108 3 0 chr6 45010289 45010596 -137404646 - AluSc SINE Alu -1 308 1 219 88 0 0 chr6 45010598 45010632 -137404610 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 214 250 75 106 chr6 45010651 45010811 -137404431 + MIR SINE MIR 103 257 -5 986 299 105 15 chr6 45011328 45011794 -137403448 + L2 LINE L2 2794 3300 -13 186 43 0 0 chr6 45011810 45011833 -137403409 + (TATG)n Simple_repeat Simple_repeat 3 25 0 2018 138 0 0 chr6 45011834 45012125 -137403117 - AluSx SINE Alu -21 291 1 461 303 62 19 chr6 45012491 45012578 -137402664 + MIR SINE MIR 62 144 -118 2183 114 7 0 chr6 45012578 45012885 -137402357 + AluSx SINE Alu 1 309 -3 461 303 62 19 chr6 45012885 45012959 -137402283 + MIR SINE MIR 144 230 -32 251 350 31 10 chr6 45013311 45013408 -137401834 - L2 LINE L2 -16 3256 3158 308 254 282 7 chr6 45014180 45014322 -137400920 - MER5A DNA MER1_type 0 189 9 474 61 0 0 chr6 45014607 45014673 -137400569 + (CA)n Simple_repeat Simple_repeat 1 66 0 674 185 82 14 chr6 45015019 45015165 -137400077 + MIR SINE MIR 79 234 -28 403 265 14 148 chr6 45016030 45016253 -137398989 + MIR SINE MIR 70 262 0 22 0 0 0 chr6 45016860 45016882 -137398360 + GC_rich Low_complexity Low_complexity 1 22 0 275 346 109 19 chr6 45019232 45019388 -137395854 + L2 LINE L2 3096 3265 -7 817 269 102 3 chr6 45020955 45021279 -137393963 + LTR16A LTR ERVL 95 450 0 246 301 40 122 chr6 45021649 45021945 -137393297 + L2 LINE L2 2993 3264 -8 889 296 58 47 chr6 45022028 45022514 -137392728 + LTR16C LTR ERVL 1 491 0 268 285 153 21 chr6 45022711 45022855 -137392387 - MIR SINE MIR -15 247 85 282 29 0 0 chr6 45023275 45023310 -137391932 + (TG)n Simple_repeat Simple_repeat 1 35 0 912 208 33 0 chr6 45024604 45024787 -137390455 - MER5A DNA MER1_type 0 189 1 413 262 226 0 chr6 45024828 45024992 -137390250 + MIR SINE MIR 14 214 -48 188 250 0 0 chr6 45025059 45025095 -137390147 + MIR SINE MIR 225 260 -2 472 278 38 13 chr6 45025568 45025752 -137389490 - MIR3 SINE MIR -69 139 3 547 156 0 0 chr6 45026954 45027044 -137388198 - L1MB7 LINE L1 -8 6176 6087 1553 204 6 14 chr6 45027045 45027398 -137387844 - L1MB7 LINE L1 -322 5862 5513 263 250 29 0 chr6 45027437 45027505 -137387737 + MLT1L LTR MaLR 5 74 -541 321 258 159 6 chr6 45027602 45027765 -137387477 - LTR16A1 LTR ERVL -83 374 187 2130 122 3 3 chr6 45028252 45028563 -137386679 - AluSx SINE Alu -1 311 1 288 143 0 0 chr6 45029091 45029147 -137386095 + (GA)n Simple_repeat Simple_repeat 1 56 0 369 141 0 0 chr6 45030816 45030887 -137384355 + (GA)n Simple_repeat Simple_repeat 1 71 0 192 274 0 0 chr6 45030954 45031005 -137384237 - L2 LINE L2 -1 3271 3221 1298 265 57 0 chr6 45032130 45032515 -137382727 - LTR16C LTR ERVL 0 491 85 2255 99 0 0 chr6 45032814 45033118 -137382124 - AluSg1 SINE Alu -5 304 1 1180 130 6 0 chr6 45034707 45034868 -137380374 - AluJb SINE Alu -17 295 134 305 234 32 121 chr6 45034895 45034921 -137380321 + L2 LINE L2 3164 3191 -122 2298 98 0 3 chr6 45034921 45035217 -137380025 - AluSg SINE Alu -15 295 1 305 234 32 121 chr6 45035217 45035314 -137379928 + L2 LINE L2 3191 3276 -37 3120 214 9 80 chr6 45035420 45035469 -137379773 - L1MEc LINE L1 -5468 928 877 2355 112 3 0 chr6 45035469 45035781 -137379461 - AluSp SINE Alu 0 313 1 3120 214 9 80 chr6 45035781 45036679 -137378563 - L1MEc LINE L1 -5519 877 48 276 252 165 0 chr6 45036831 45036946 -137378296 - MLT1H LTR MaLR -10 539 406 1574 160 6 99 chr6 45037834 45038166 -137377076 + AluJo SINE Alu 1 301 -1 240 35 0 0 chr6 45038304 45038333 -137376909 + (TG)n Simple_repeat Simple_repeat 1 29 0 187 248 128 43 chr6 45038399 45038516 -137376726 - L2 LINE L2 -9 3263 3137 399 261 135 47 chr6 45038597 45038812 -137376430 - L2 LINE L2 -58 3255 3022 183 278 122 11 chr6 45038844 45038934 -137376308 + MIR3 SINE MIR 104 203 -5 287 113 38 0 chr6 45040336 45040389 -137374853 - Alu SINE Alu 0 301 247 536 145 16 59 chr6 45040397 45040583 -137374659 + CT-rich Low_complexity Low_complexity 3 180 0 1137 55 11 27 chr6 45040587 45040770 -137374472 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 209 193 0 18 chr6 45040782 45040839 -137374403 + CT-rich Low_complexity Low_complexity 1 56 0 2200 128 7 0 chr6 45040839 45041144 -137374098 - AluSx SINE Alu -3 309 3 427 245 14 63 chr6 45041273 45041416 -137373826 + MIR3 SINE MIR 10 145 -63 481 219 175 44 chr6 45041443 45041603 -137373639 + MER5A DNA MER1_type 4 184 -5 419 284 72 7 chr6 45042112 45042259 -137372983 + MER5B DNA MER1_type 3 189 0 222 321 132 9 chr6 45042863 45042969 -137372273 - MIR SINE MIR -71 137 19 643 237 81 34 chr6 45043970 45044215 -137371027 + MIR SINE MIR 3 251 -11 1496 299 152 29 chr6 45044472 45046046 -137369196 + L2 LINE L2 1531 3310 -3 252 77 0 0 chr6 45046131 45046170 -137369072 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 370 293 184 34 chr6 45047472 45047566 -137367676 + L2 LINE L2 2640 2718 -595 2176 116 59 31 chr6 45047566 45047920 -137367322 + THE1B LTR MaLR 1 364 0 370 293 184 34 chr6 45047920 45048132 -137367110 + L2 LINE L2 2718 2991 -322 626 219 100 43 chr6 45048338 45048548 -137366694 + MLT1J LTR MaLR 33 254 -257 847 172 26 0 chr6 45049403 45049554 -137365688 + MLT1A2 LTR MaLR 1 155 -219 635 117 10 0 chr6 45049584 45049687 -137365555 + (TC)n Simple_repeat Simple_repeat 2 105 0 303 330 0 0 chr6 45049687 45049778 -137365464 + MLT1A2 LTR MaLR 173 263 -111 2394 136 14 3 chr6 45049778 45050139 -137365103 + MLT1A1 LTR MaLR 1 365 0 2354 114 0 3 chr6 45050177 45050483 -137364759 - AluSq SINE Alu -8 305 1 801 254 47 19 chr6 45050572 45050785 -137364457 - MIR SINE MIR -35 227 9 277 224 26 26 chr6 45051126 45051202 -137364040 - MIR3 SINE MIR -21 187 112 231 241 0 0 chr6 45052508 45052562 -137362680 - MIR SINE MIR -65 143 90 302 299 24 24 chr6 45052959 45053123 -137362119 + GA-rich Low_complexity Low_complexity 4 167 0 2229 115 3 13 chr6 45053166 45053479 -137361763 - AluSg SINE Alu 0 310 1 276 242 0 48 chr6 45053515 45053577 -137361665 + MIR3 SINE MIR 98 156 -52 531 187 122 8 chr6 45053903 45054026 -137361216 + MIR SINE MIR 21 157 -105 187 167 33 83 chr6 45054620 45054680 -137360562 - MER5B DNA MER1_type -101 77 21 180 0 0 0 chr6 45054717 45054737 -137360505 + (T)n Simple_repeat Simple_repeat 1 20 0 1885 135 3 75 chr6 45054752 45055086 -137360156 - AluJb SINE Alu 0 312 3 5343 160 34 25 chr6 45055635 45056141 -137359101 - L1MC2 LINE L1 -2 6342 5842 2197 122 0 0 chr6 45056141 45056436 -137358806 - AluSx SINE Alu -15 297 3 5343 160 34 25 chr6 45056436 45057138 -137358104 - L1MC2 LINE L1 -502 5842 5122 268 192 100 73 chr6 45057944 45058080 -137357162 + L1M4 LINE L1 4931 5063 -1083 404 292 62 31 chr6 45058081 45058242 -137357000 + MIR SINE MIR 73 238 -24 276 208 89 58 chr6 45058277 45058431 -137356811 - L1ME LINE L1 -669 5501 5335 1923 143 10 27 chr6 45058431 45058732 -137356510 + AluJb SINE Alu 1 296 -16 276 208 89 58 chr6 45058732 45058789 -137356453 - L1ME LINE L1 -835 5335 5281 198 143 0 0 chr6 45058789 45058824 -137356418 + (TA)n Simple_repeat Simple_repeat 2 36 0 2491 80 7 0 chr6 45058994 45059294 -137355948 - AluSx SINE Alu -8 304 3 2397 178 18 12 chr6 45059305 45059793 -137355449 - L1MC3 LINE L1 0 7785 7295 2355 88 17 0 chr6 45059804 45060099 -137355143 - AluSx SINE Alu -12 300 1 2463 89 0 0 chr6 45060980 45061283 -137353959 - AluSx SINE Alu -9 303 1 328 219 35 35 chr6 45061394 45061508 -137353734 + L1ME4a LINE L1 6007 6120 -1 1840 230 62 4 chr6 45061613 45062066 -137353176 + REP3 LTR ERV 1 479 -83 1647 234 48 2 chr6 45062186 45062604 -137352638 + Charlie4a DNA MER1_type 2 438 -70 336 284 64 28 chr6 45062641 45062750 -137352492 + MIR3 SINE MIR 70 182 -26 354 249 147 40 chr6 45062905 45063113 -137352129 + L1ME4a LINE L1 5678 5862 -259 1599 153 35 45 chr6 45063113 45063423 -137351819 - AluJb SINE Alu 0 307 1 354 249 147 40 chr6 45063423 45063619 -137351623 + L1ME4a LINE L1 5862 6121 0 1002 262 20 28 chr6 45064324 45064591 -137350651 - MIR SINE MIR 0 262 1 2199 125 3 3 chr6 45064811 45065115 -137350127 + AluSx SINE Alu 1 304 -8 336 290 60 38 chr6 45066217 45066400 -137348842 - L3b LINE CR1 -136 1447 1261 2368 87 0 22 chr6 45066401 45066745 -137348497 + AluSq SINE Alu 1 313 0 366 268 98 16 chr6 45067243 45067366 -137347876 - MIR SINE MIR -77 185 53 * 686 317 162 35 chr6 45067359 45067631 -137347611 - L3 LINE CR1 -66 1511 1275 2181 81 0 90 chr6 45067631 45067953 -137347289 - AluSc SINE Alu -16 293 1 686 317 162 35 chr6 45067953 45068137 -137347105 - L3 LINE CR1 -302 1275 997 190 238 0 127 chr6 45068154 45068217 -137347025 - L2 LINE L2 -11 3261 3207 * 434 267 59 42 chr6 45068203 45068393 -137346849 - MIR SINE MIR -34 228 33 328 320 226 19 chr6 45068400 45068709 -137346533 - L3 LINE CR1 -571 1006 634 315 333 71 7 chr6 45069748 45069889 -137345353 - MIR SINE MIR -74 188 39 958 262 169 9 chr6 45069895 45070402 -137344840 - L2 LINE L2 0 3313 2714 424 268 176 13 chr6 45071373 45071526 -137343716 + MER5B DNA MER1_type 1 178 0 286 301 98 15 chr6 45071841 45071974 -137343268 - MIR3 SINE MIR -45 163 20 1083 185 77 0 chr6 45074535 45074730 -137340512 + MER63A DNA MER1_type 1 210 0 756 314 53 34 chr6 45074886 45075297 -137339945 + LTR33 LTR ERVL 103 521 0 5952 148 24 11 chr6 45076950 45079025 -137336217 + L1MA7 LINE L1 4187 6289 -2 1662 166 21 19 chr6 45079050 45079375 -137335867 + MLT2B1 LTR ERVL 195 520 0 276 273 0 0 chr6 45079929 45079995 -137335247 - L2 LINE L2 0 3272 3207 288 115 19 19 chr6 45079997 45080049 -137335193 - MIR3 SINE MIR -45 163 112 374 221 0 0 chr6 45080100 45080168 -137335074 - L2 LINE L2 0 3272 3205 1430 190 99 0 chr6 45080599 45080883 -137334359 - AluJo SINE Alu 0 312 1 345 154 63 0 chr6 45081719 45081862 -137333380 + (CA)n Simple_repeat Simple_repeat 1 152 0 293 145 53 40 chr6 45081842 45081994 -137333248 + (CATA)n Simple_repeat Simple_repeat 4 157 0 * 255 170 19 19 chr6 45082001 45082054 -137333188 + (CA)n Simple_repeat Simple_repeat 1 53 0 298 311 108 54 chr6 45082914 45083155 -137332087 - L2 LINE L2 -3 3269 3016 659 246 134 17 chr6 45083343 45083575 -137331667 + MIR SINE MIR 2 260 -2 192 152 0 0 chr6 45084078 45084111 -137331131 + (CA)n Simple_repeat Simple_repeat 1 33 0 1923 214 30 7 chr6 45084138 45084564 -137330678 + MER63B DNA MER1_type 1 436 0 5971 159 22 8 chr6 45085688 45087702 -137327540 - L1PA16 LINE L1 0 6166 4125 292 279 215 12 chr6 45088578 45088750 -137326492 + MIR SINE MIR 2 208 -54 1407 288 72 43 chr6 45089626 45090279 -137324963 + L3 LINE CR1 901 1572 -5 491 297 158 27 chr6 45090583 45090957 -137324285 - L3 LINE CR1 -11 1566 1144 192 281 0 47 chr6 45092950 45093014 -137322228 - L2 LINE L2 -11 3302 3242 267 326 57 47 chr6 45093061 45093254 -137321988 - MER117 DNA MER1_type 0 197 3 2362 120 0 0 chr6 45093283 45093592 -137321650 + AluSx SINE Alu 1 309 -3 281 277 107 9 chr6 45093602 45093714 -137321528 + MIR SINE MIR 32 154 -108 436 154 19 19 chr6 45095415 45095519 -137319723 + (TATG)n Simple_repeat Simple_repeat 2 105 0 520 271 93 70 chr6 45096120 45096768 -137318474 + L1MEd LINE L1 905 1670 -820 680 276 71 8 chr6 45096795 45097034 -137318208 + MIR SINE MIR 8 261 -1 30 45 0 0 chr6 45097087 45097131 -137318111 + AT_rich Low_complexity Low_complexity 1 44 0 253 306 0 24 chr6 45097524 45097609 -137317633 + (TATG)n Simple_repeat Simple_repeat 1 83 0 27 49 0 0 chr6 45097783 45097824 -137317418 + AT_rich Low_complexity Low_complexity 1 41 0 655 259 141 0 chr6 45100102 45100322 -137314920 + MIR SINE MIR 11 261 -1 2252 167 31 29 chr6 45102346 45102759 -137312483 + MLT2D LTR ERVL 1 414 0 1516 222 96 27 chr6 45104866 45105272 -137309970 - LTR16C LTR ERVL 0 491 58 237 273 61 0 chr6 45106441 45106507 -137308735 - L1M3de LINE L1 -5385 1268 1199 8595 229 43 40 chr6 45106710 45109548 -137305694 - L1ME1 LINE L1 -2 6164 3296 1874 133 48 3 chr6 45109548 45109842 -137305400 - AluSg SINE Alu -3 307 1 8595 229 43 40 chr6 45109842 45110288 -137304954 - L1ME1 LINE L1 -2870 3296 2853 1919 146 3 26 chr6 45110288 45110590 -137304652 - AluJo SINE Alu -17 295 1 634 287 145 14 chr6 45111484 45112015 -137303227 + L1ME LINE L1 5168 5770 -392 237 65 0 0 chr6 45112161 45112192 -137303050 + (TC)n Simple_repeat Simple_repeat 1 31 0 205 224 0 105 chr6 45112597 45112673 -137302569 + MIR SINE MIR 117 184 -78 187 336 28 28 chr6 45116717 45116824 -137298418 - L3b LINE CR1 -323 1260 1154 860 291 69 20 chr6 45116947 45117245 -137297997 + MLT1K LTR MaLR 98 413 -175 194 0 39 0 chr6 45117245 45117271 -137297971 + (GGAGA)n Simple_repeat Simple_repeat 5 31 0 466 300 20 0 chr6 45117975 45118125 -137297117 - MER91A DNA MER1_type 0 196 44 2255 121 0 3 chr6 45118441 45118746 -137296496 + AluSg1 SINE Alu 1 304 -5 216 0 0 0 chr6 45118836 45118860 -137296382 + (A)n Simple_repeat Simple_repeat 1 24 0 239 206 29 15 chr6 45118874 45118942 -137296300 - HsTC2 DNA Tc2 -1827 71 3 324 198 66 75 chr6 45118942 45119048 -137296194 + MIR SINE MIR 149 253 -9 1353 213 163 7 chr6 45121790 45122194 -137293048 - Charlie4a DNA MER1_type -1 507 41 2318 119 0 3 chr6 45122605 45122915 -137292327 + AluSx SINE Alu 1 309 -3 1095 226 4 13 chr6 45123935 45124161 -137291081 + MER58A DNA MER1_type 1 224 0 266 325 89 30 chr6 45124285 45124454 -137290788 - L1ME4a LINE L1 -188 5933 5755 278 218 98 98 chr6 45124822 45125015 -137290227 - L1MC5 LINE L1 -44 7917 7725 575 298 120 41 chr6 45126846 45127646 -137287596 + L2 LINE L2 1998 2860 -454 541 259 30 12 chr6 45127883 45128049 -137287193 + L2 LINE L2 3144 3312 -1 1879 149 10 24 chr6 45130002 45130297 -137284945 + AluJb SINE Alu 1 291 -21 362 278 111 12 chr6 45131640 45131802 -137283440 + MER5B DNA MER1_type 1 178 0 233 344 25 45 chr6 45132406 45132563 -137282679 - L1ME4a LINE L1 -393 5769 5616 2334 82 3 0 chr6 45133162 45133454 -137281788 + AluY SINE Alu 1 293 -18 333 275 52 28 chr6 45133530 45133741 -137281501 + L2 LINE L2 1897 2112 -1202 200 191 0 43 chr6 45133862 45133909 -137281333 - L2 LINE L2 -2 3311 3267 247 368 21 49 chr6 45135673 45135817 -137279425 + L2 LINE L2 3129 3268 -4 1876 131 7 37 chr6 45137816 45138156 -137277086 + AluSx SINE Alu 1 312 0 235 269 90 15 chr6 45138472 45138597 -137276645 - MIR SINE MIR -27 235 98 243 207 69 35 chr6 45138823 45138910 -137276332 + L2 LINE L2 3133 3222 -91 6061 154 14 5 chr6 45138917 45140884 -137274358 - L1PB3 LINE L1 0 6154 4171 190 375 14 14 chr6 45140885 45140957 -137274285 + L2 LINE L2 3169 3240 -32 180 0 0 0 chr6 45140990 45141010 -137274232 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 7046 112 110 11 chr6 45141252 45141496 -137273746 + Tigger3b DNA MER2_type 1 219 -2809 2125 100 18 4 chr6 45141496 45141808 -137273434 - AluSq SINE Alu 0 316 1 7046 112 110 11 chr6 45141808 45142681 -137272561 + Tigger3b DNA MER2_type 219 1230 -1 360 320 46 7 chr6 45144648 45144801 -137270441 - MER117 DNA MER1_type 0 197 39 2429 65 0 3 chr6 45146366 45146716 -137268526 + AluY SINE Alu 1 311 0 1873 187 0 0 chr6 45146973 45147278 -137267964 - AluSx SINE Alu -7 305 1 292 226 83 0 chr6 45147469 45147553 -137267689 - MIR SINE MIR -13 249 159 464 296 75 15 chr6 45147568 45147767 -137267475 - MIR SINE MIR -24 238 28 1411 119 87 145 chr6 45147824 45147967 -137267275 - L1MA9 LINE L1 -5 6307 6157 192 40 0 0 chr6 45147967 45147992 -137267250 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1411 119 87 145 chr6 45147992 45148250 -137266992 - L1MA9 LINE L1 -155 6157 5929 392 301 46 13 chr6 45149609 45149781 -137265461 + MIR SINE MIR 8 183 -64 243 288 0 14 chr6 45149913 45149986 -137265256 + L2 LINE L2 3242 3313 0 2236 117 13 0 chr6 45150017 45150324 -137264918 - AluSq SINE Alu -2 311 1 23 0 0 0 chr6 45150390 45150413 -137264829 + AT_rich Low_complexity Low_complexity 1 23 0 284 333 124 12 chr6 45150739 45150997 -137264245 + L2 LINE L2 1393 1679 -1635 691 301 42 4 chr6 45151197 45151459 -137263783 + L2 LINE L2 1693 1964 -1350 490 302 65 71 chr6 45151488 45151716 -137263526 + MLT1I LTR MaLR 102 329 -80 2256 102 0 0 chr6 45151716 45152009 -137263233 - AluSq SINE Alu -20 293 1 490 302 65 71 chr6 45152009 45152088 -137263154 + MLT1I LTR MaLR 329 407 -2 1483 298 155 46 chr6 45152097 45153224 -137262018 + L2 LINE L2 1970 3255 -58 642 234 136 20 chr6 45153982 45154057 -137261185 - L1ME4a LINE L1 -3 6118 6053 2006 143 0 0 chr6 45154057 45154343 -137260899 + AluJb SINE Alu 1 286 -26 642 234 136 20 chr6 45154343 45154562 -137260680 - L1ME4a LINE L1 -68 6053 5790 661 287 85 18 chr6 45154650 45154932 -137260310 - L2 LINE L2 0 3313 3013 231 299 15 15 chr6 45155049 45155116 -137260126 + MIR SINE MIR 71 137 -125 190 196 43 0 chr6 45155355 45155401 -137259841 + L2 LINE L2 3261 3308 -5 295 155 103 0 chr6 45155568 45155626 -137259616 + MIR SINE MIR 118 181 -81 270 361 58 0 chr6 45157273 45157464 -137257778 + L2 LINE L2 1893 2094 -1220 662 262 20 40 chr6 45157762 45158014 -137257228 + L1MEd LINE L1 1009 1255 -4864 189 0 0 0 chr6 45158066 45158087 -137257155 + (A)n Simple_repeat Simple_repeat 1 21 0 43357 32 21 1 chr6 45158092 45164069 -137251173 + L1PA2 LINE L1 52 6152 -3 365 297 43 10 chr6 45164071 45164289 -137250953 + L1MEd LINE L1 1294 1613 -877 263 373 85 0 chr6 45164403 45164521 -137250721 + L2 LINE L2 2934 3061 -252 761 192 165 86 chr6 45164948 45165354 -137249888 - Charlie5 DNA MER1_type 0 2624 2187 * 1132 190 97 34 chr6 45165353 45165622 -137249620 - Charlie5 DNA MER1_type -2326 286 1 543 282 92 73 chr6 45165675 45166086 -137249156 + MLT1L LTR MaLR 197 615 0 353 264 62 2 chr6 45166935 45167083 -137248159 - L1ME4a LINE L1 -3 6050 1193 425 324 103 74 chr6 45168920 45169704 -137245538 + L2 LINE L2 2446 3272 0 208 130 43 0 chr6 45169756 45169802 -137245440 + CT-rich Low_complexity Low_complexity 2 49 0 7520 225 44 50 chr6 45169882 45173109 -137242133 + L1M4b LINE L1 1 3199 -3758 1020 112 0 0 chr6 45173109 45173243 -137241999 - L1PA13 LINE L1 -11 6152 6019 7520 225 44 50 chr6 45173243 45173658 -137241584 + L1M4b LINE L1 3199 3615 -3342 328 313 20 0 chr6 45175602 45175749 -137239493 + L2 LINE L2 1759 1908 -1406 336 80 0 0 chr6 45176393 45176443 -137238799 - AluSp SINE Alu -1 302 253 2263 83 4 0 chr6 45176443 45176720 -137238522 - AluSp SINE Alu -35 278 1 216 147 0 0 chr6 45178003 45178037 -137237205 + MIR SINE MIR 219 252 -10 396 241 20 110 chr6 45178622 45178798 -137236444 + MIR SINE MIR 34 191 -47 3031 63 16 11 chr6 45179379 45179757 -137235485 + L1PA10 LINE L1 5789 6168 0 185 257 0 57 chr6 45180517 45180587 -137234655 - L2 LINE L2 -13 3300 3235 1159 283 56 37 chr6 45180587 45181081 -137234161 + L1MC4a LINE L1 5336 5829 -1979 2358 91 0 3 chr6 45181115 45181423 -137233819 + AluSc SINE Alu 1 307 -2 381 188 0 59 chr6 45181431 45181532 -137233710 - L1MA9 LINE L1 -38 6274 6180 5058 94 9 0 chr6 45181583 45182252 -137232990 - L1PB1 LINE L1 -1 6150 5476 10292 191 25 3 chr6 45182258 45184607 -137230635 - L1P5 LINE L1 -618 5533 3133 441 279 65 68 chr6 45184600 45184922 -137230320 + L1MC4a LINE L1 5851 6171 -1637 * 315 0 0 0 chr6 45185541 45185576 -137229666 + (CA)n Simple_repeat Simple_repeat 1 35 0 338 279 70 44 chr6 45186251 45186409 -137228833 + MER117 DNA MER1_type 36 197 0 301 289 97 18 chr6 45186415 45186529 -137228713 - MIR SINE MIR -70 138 16 193 276 172 30 chr6 45188017 45188151 -137227091 - L2 LINE L2 -410 2904 2752 198 246 145 0 chr6 45188571 45188640 -137226602 - MIR SINE MIR -111 151 73 487 311 123 18 chr6 45188852 45189080 -137226162 + L2 LINE L2 3032 3283 -30 983 195 51 19 chr6 45189354 45189569 -137225673 - MIR SINE MIR -17 245 24 1728 264 69 37 chr6 45189590 45190128 -137225114 + MLT1H1 LTR MaLR 1 555 0 24 53 0 0 chr6 45190647 45190685 -137224557 + AT_rich Low_complexity Low_complexity 1 38 0 861 252 128 16 chr6 45190801 45191122 -137224120 + LTR16A LTR ERVL 30 386 -64 225 0 0 0 chr6 45191525 45191550 -137223692 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 494 240 89 0 chr6 45191567 45191713 -137223529 + MER112 DNA MER1_type 87 245 -15 430 330 130 54 chr6 45191901 45192216 -137223026 + L2 LINE L2 2926 3264 -8 739 257 116 82 chr6 45194507 45195079 -137220163 + MLT1G1 LTR MaLR 1 551 -4 579 313 80 43 chr6 45195092 45195565 -137219677 + MLT1G1-int LTR MaLR 3 605 -766 528 198 24 156 chr6 45196753 45196920 -137218322 - MIR3 SINE MIR -10 198 54 266 115 39 0 chr6 45196937 45196989 -137218253 - L2 LINE L2 0 3272 3219 225 209 0 0 chr6 45199139 45199182 -137216060 + MER103 DNA DNA 2 44 -122 285 252 9 104 chr6 45199891 45200006 -137215236 - MIR SINE MIR -3 259 156 269 250 0 79 chr6 45201529 45201605 -137213637 - MER5A DNA MER1_type -3 186 117 994 209 43 19 chr6 45202032 45202243 -137212999 - MER58A DNA MER1_type -8 216 1 31 0 0 0 chr6 45202253 45202284 -137212958 + AT_rich Low_complexity Low_complexity 1 31 0 393 355 84 52 chr6 45202605 45202952 -137212290 - L2 LINE L2 -1 3271 2914 315 301 0 18 chr6 45203058 45203171 -137212071 + LTR33 LTR ERVL 391 501 -20 664 281 47 10 chr6 45204079 45204271 -137210971 + MIR SINE MIR 63 261 -1 1160 163 37 19 chr6 45204478 45204693 -137210549 + L1PA11 LINE L1 10 228 -7353 24133 157 11 17 chr6 45204695 45210070 -137205172 + L1PA11 LINE L1 1480 7612 0 533 147 10 88 chr6 45210073 45210175 -137205067 + MER21B LTR ERV1 13 106 -757 * 1768 225 49 32 chr6 45210173 45210877 -137204365 + MER21B LTR ERV1 19 811 -52 252 0 0 0 chr6 45211145 45211173 -137204069 + (TTTCC)n Simple_repeat Simple_repeat 1 28 0 819 64 0 0 chr6 45211173 45211283 -137203959 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 319 169 13 13 chr6 45211392 45211469 -137203773 + CT-rich Low_complexity Low_complexity 4 80 0 295 198 0 31 chr6 45211463 45211559 -137203683 + C-rich Low_complexity Low_complexity 1 93 0 * 209 229 0 21 chr6 45211561 45211609 -137203633 + T-rich Low_complexity Low_complexity 3 49 0 16464 128 17 29 chr6 45211778 45213616 -137201626 + L1P LINE L1 11 1807 -4339 2354 97 3 0 chr6 45213616 45213926 -137201316 - AluY SINE Alu 0 311 1 16464 128 17 29 chr6 45213926 45214742 -137200500 + L1P LINE L1 1807 2632 -3514 7435 61 4 8 chr6 45214743 45215646 -137199596 + L1PA6 LINE L1 5255 6154 0 506 261 69 48 chr6 45216437 45216659 -137198583 - MIR SINE MIR -27 235 14 1301 236 202 14 chr6 45216941 45217382 -137197860 + MER69 DNA AcHobo 12 535 -691 1328 175 106 47 chr6 45217388 45217748 -137197494 + MER69 DNA AcHobo 2146 2526 0 262 271 104 35 chr6 45219340 45219484 -137195758 + L1MC/D LINE L1 5746 5899 -1909 1229 169 77 0 chr6 45219488 45219695 -137195547 + MER46A DNA MER2_type 14 236 0 207 164 55 73 chr6 45219720 45219775 -137195467 + L2 LINE L2 3219 3272 0 305 177 57 28 chr6 45219857 45219998 -137195244 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 37 69 0 0 chr6 45220004 45220076 -137195166 + AT_rich Low_complexity Low_complexity 1 72 0 252 0 0 0 chr6 45223238 45223266 -137191976 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2121 115 3 10 chr6 45223273 45223587 -137191655 + AluSq SINE Alu 1 312 -1 732 195 43 22 chr6 45223728 45223913 -137191329 - MER53 DNA DNA 0 189 1 605 314 46 41 chr6 45225390 45225778 -137189464 + L2 LINE L2 102 491 -2823 233 301 81 24 chr6 45225918 45226041 -137189201 + L2 LINE L2 631 760 -2554 504 331 119 58 chr6 45226053 45227180 -137188062 + L2 LINE L2 1802 3038 -234 468 0 0 0 chr6 45227180 45227232 -137188010 + (TA)n Simple_repeat Simple_repeat 2 53 0 504 331 119 58 chr6 45227232 45227483 -137187759 + L2 LINE L2 3038 3272 0 219 36 0 0 chr6 45227657 45227685 -137187557 + (TG)n Simple_repeat Simple_repeat 1 28 0 315 113 0 0 chr6 45227687 45227740 -137187502 + (GA)n Simple_repeat Simple_repeat 2 54 0 1401 261 45 24 chr6 45227985 45228407 -137186835 + LTR16A LTR ERVL 16 446 -4 894 206 0 9 chr6 45228681 45228886 -137186356 - AluJb SINE Alu -16 296 3 1749 98 5 0 chr6 45229007 45229231 -137186011 + AluSq SINE Alu 1 225 -88 738 105 0 0 chr6 45229231 45229384 -137185858 + AluSg/x SINE Alu 188 340 0 5356 141 19 24 chr6 45231368 45232290 -137182952 - L1MA7 LINE L1 0 6291 5374 2761 193 42 40 chr6 45232279 45233039 -137182203 + L1 LINE L1 4511 5330 -816 * 2403 79 0 3 chr6 45233039 45233331 -137181911 + AluY SINE Alu 1 291 -20 2761 193 42 40 chr6 45233331 45233373 -137181869 + L1 LINE L1 5330 5370 -776 197 391 35 9 chr6 45233375 45233490 -137181752 + L2 LINE L2 2939 3056 -216 227 250 146 0 chr6 45235759 45235855 -137179387 + MIR SINE MIR 132 241 -21 239 196 0 18 chr6 45235884 45235940 -137179302 + L2 LINE L2 3257 3311 -2 213 94 0 0 chr6 45235941 45235973 -137179269 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 39460 37 0 11 chr6 45236553 45242762 -137172480 + L1PA3 LINE L1 1 6152 -3 2261 102 0 3 chr6 45242883 45243177 -137172065 - AluSg SINE Alu -17 293 1 400 291 158 42 chr6 45245047 45245408 -137169834 - L2 LINE L2 0 3313 2911 417 185 12 0 chr6 45245441 45245522 -137169720 + MER20 DNA MER1_type 135 216 -3 588 303 8 75 chr6 45245523 45245777 -137169465 - L2 LINE L2 -403 2911 2675 201 252 53 5 chr6 45246364 45246438 -137168804 - MIR SINE MIR -116 92 15 25 0 0 0 chr6 45247781 45247806 -137167436 + AT_rich Low_complexity Low_complexity 1 25 0 238 312 152 41 chr6 45249503 45250010 -137165232 + L2 LINE L2 1146 1708 -1606 2153 139 0 0 chr6 45250078 45250379 -137164863 + AluSx SINE Alu 1 301 -11 273 208 167 0 chr6 45251329 45251401 -137163841 - L1ME LINE L1 -299 5822 5739 820 252 29 10 chr6 45252852 45253058 -137162184 - MIR SINE MIR 0 262 53 205 171 0 24 chr6 45253481 45253522 -137161720 + GA-rich Low_complexity Low_complexity 4 43 0 1655 98 8 0 chr6 45254461 45254707 -137160535 - L1MA4 LINE L1 -477 5823 5576 2685 139 17 11 chr6 45254707 45255171 -137160071 + L1MA4 LINE L1 5823 6291 -9 194 272 74 25 chr6 45255317 45255398 -137159844 + MIR SINE MIR 76 160 -102 344 262 191 14 chr6 45255480 45255621 -137159621 + MER5A DNA MER1_type 24 189 0 199 359 48 0 chr6 45255725 45255828 -137159414 - MIR SINE MIR -6 256 149 399 344 60 6 chr6 45255904 45256087 -137159155 - MIR SINE MIR -50 212 20 2287 117 0 3 chr6 45259205 45259512 -137155730 + AluSx SINE Alu 1 306 -6 207 242 0 0 chr6 45260580 45260642 -137154600 + (TA)n Simple_repeat Simple_repeat 1 62 0 30 45 0 0 chr6 45261370 45261414 -137153828 + AT_rich Low_complexity Low_complexity 1 44 0 33 43 0 0 chr6 45261597 45261644 -137153598 + AT_rich Low_complexity Low_complexity 1 47 0 191 288 175 12 chr6 45263217 45263297 -137151945 - L2 LINE L2 -3 3310 3218 446 138 9 92 chr6 45263486 45263595 -137151647 + MER53 DNA DNA 90 189 0 266 211 39 0 chr6 45263959 45264011 -137151231 + MIR SINE MIR 96 149 -59 2106 120 3 20 chr6 45264892 45265191 -137150051 - AluSx SINE Alu -18 294 1 203 345 0 84 chr6 45266199 45266318 -137148924 + MIR SINE MIR 151 259 -3 372 224 75 29 chr6 45266427 45266490 -137148752 - L1ME4a LINE L1 -2 6119 6060 1817 147 17 23 chr6 45266490 45266789 -137148453 + AluSx SINE Alu 1 297 -15 372 224 75 29 chr6 45266789 45266899 -137148343 - L1ME4a LINE L1 -61 6060 5938 196 172 35 0 chr6 45267004 45267062 -137148180 + (TA)n Simple_repeat Simple_repeat 2 61 0 238 155 333 12 chr6 45267115 45267199 -137148043 - L1ME4a LINE L1 -388 5733 5623 333 266 188 13 chr6 45267342 45267496 -137147746 - L1ME4a LINE L1 -580 5541 5361 21 0 0 0 chr6 45268810 45268831 -137146411 + AT_rich Low_complexity Low_complexity 1 21 0 369 313 33 20 chr6 45270700 45270850 -137144392 - MIR SINE MIR -1 261 110 246 339 46 64 chr6 45270870 45270979 -137144263 - MIR SINE MIR -74 134 28 2508 57 0 0 chr6 45271142 45271441 -137143801 - AluY SINE Alu -12 299 1 552 295 104 31 chr6 45271572 45271860 -137143382 - L2 LINE L2 -4 3309 3001 2298 118 0 6 chr6 45272071 45272385 -137142857 - AluSq SINE Alu -1 312 1 290 65 0 22 chr6 45272480 45272526 -137142716 + (TC)n Simple_repeat Simple_repeat 1 45 0 189 230 14 122 chr6 45273390 45273464 -137141778 + L2 LINE L2 3207 3272 0 469 258 33 39 chr6 45273720 45273902 -137141340 - L2 LINE L2 -814 2500 2320 2385 119 19 24 chr6 45274083 45274460 -137140782 + THE1C LTR MaLR 1 375 0 755 219 61 10 chr6 45274967 45275163 -137140079 + L2 LINE L2 3108 3313 0 216 368 0 13 chr6 45275632 45275708 -137139534 - MIR3 SINE MIR -24 184 110 195 220 0 0 chr6 45275810 45275860 -137139382 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 203 273 0 0 chr6 45275940 45275984 -137139258 + L2 LINE L2 3251 3294 -19 198 0 0 0 chr6 45276194 45276216 -137139026 + (T)n Simple_repeat Simple_repeat 1 22 0 405 336 54 20 chr6 45277341 45277490 -137137752 + L2 LINE L2 3118 3271 -1 327 287 88 82 chr6 45277852 45278604 -137136638 - L1MEd LINE L1 -788 1702 898 2460 65 3 3 chr6 45278798 45279104 -137136138 - AluY SINE Alu -5 306 1 2203 79 32 0 chr6 45279667 45279944 -137135298 - AluSp SINE Alu -13 300 15 1107 247 116 19 chr6 45279964 45280429 -137134813 + LTR33A LTR ERVL 8 517 -6 2197 87 17 17 chr6 45281864 45282164 -137133078 - AluSc SINE Alu -9 300 1 1236 296 84 15 chr6 45282346 45284045 -137131197 - L1ME3A LINE L1 -223 5930 4107 228 248 40 30 chr6 45284121 45284222 -137131020 - L1 LINE L1 -2205 3924 3823 2190 101 40 0 chr6 45284692 45284990 -137130252 - AluSq SINE Alu -3 310 1 263 304 11 11 chr6 45285006 45285098 -137130144 - L1ME3A LINE L1 -5562 557 466 289 195 13 13 chr6 45285353 45285430 -137129812 - L1ME3A LINE L1 -5960 159 83 2252 101 0 40 chr6 45285923 45286249 -137128993 - AluSp SINE Alu 0 313 1 243 0 0 0 chr6 45286670 45286697 -137128545 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 330 26 0 0 chr6 45287206 45287245 -137127997 + (T)n Simple_repeat Simple_repeat 1 39 0 1967 130 29 13 chr6 45287674 45287981 -137127261 + AluSx SINE Alu 1 312 0 905 269 13 13 chr6 45288142 45288380 -137126862 + MIR SINE MIR 20 257 -5 22 0 0 0 chr6 45288393 45288415 -137126827 + AT_rich Low_complexity Low_complexity 1 22 0 2004 128 43 18 chr6 45288686 45289015 -137126227 - MER1B DNA MER1_type 0 337 1 1155 250 188 9 chr6 45289406 45289842 -137125400 + MLT1H1 LTR MaLR 32 545 -10 2127 149 0 3 chr6 45289888 45290197 -137125045 - AluSx SINE Alu -4 308 1 185 270 112 34 chr6 45290525 45290614 -137124628 - L2 LINE L2 -8 3264 3169 556 310 64 0 chr6 45290627 45290830 -137124412 - MIR SINE MIR -35 227 12 289 216 206 10 chr6 45291276 45291378 -137123864 + L1ME LINE L1 5350 5471 -650 269 359 15 15 chr6 45291518 45291649 -137123593 - MER5A DNA MER1_type -46 143 13 23 33 0 0 chr6 45292397 45292427 -137122815 + AT_rich Low_complexity Low_complexity 1 30 0 1830 146 10 16 chr6 45292701 45293009 -137122233 + AluSx SINE Alu 1 306 -6 207 0 0 0 chr6 45294055 45294078 -137121164 + (CCA)n Simple_repeat Simple_repeat 1 23 0 430 140 70 10 chr6 45294203 45294303 -137120939 + MER53 DNA DNA 17 122 -67 246 273 13 26 chr6 45294325 45294402 -137120840 - MIR SINE MIR 0 262 187 621 305 40 6 chr6 45294608 45294785 -137120457 + MIR3 SINE MIR 16 198 -10 180 0 0 0 chr6 45296515 45296535 -137118707 + (AATTG)n Simple_repeat Simple_repeat 4 23 0 881 198 6 0 chr6 45296772 45296929 -137118313 + FRAM SINE Alu 1 158 -8 731 174 16 0 chr6 45297267 45297388 -137117854 - MER5B DNA MER1_type -55 123 1 300 259 78 86 chr6 45299279 45299395 -137115847 + MER91B DNA MER1_type 14 128 -62 1778 136 24 3 chr6 45300091 45300378 -137114864 + MER49 LTR ERV1 2 294 -629 411 213 0 18 chr6 45300364 45300480 -137114762 + MER4E LTR ERV1 62 282 -590 * 1134 219 114 19 chr6 45300482 45300807 -137114435 + MER4D LTR ERV1 548 903 0 430 254 136 0 chr6 45302090 45302208 -137113034 - U1 snRNA snRNA -30 135 2 1697 137 0 0 chr6 45302495 45302763 -137112479 - AluSx SINE Alu 0 318 51 220 300 38 12 chr6 45302863 45302943 -137112299 + L2 LINE L2 3232 3313 0 324 290 126 17 chr6 45303008 45303183 -137112059 - L1ME LINE L1 -543 5578 5369 2282 100 0 3 chr6 45303183 45303493 -137111749 + AluSq SINE Alu 1 309 -4 324 290 126 17 chr6 45303493 45303555 -137111687 - L1ME LINE L1 -752 5369 5315 22 56 0 0 chr6 45303577 45303613 -137111629 + AT_rich Low_complexity Low_complexity 1 36 0 585 296 131 26 chr6 45303889 45304241 -137111001 + MLT1J LTR MaLR 31 419 -92 1955 166 44 19 chr6 45306172 45306534 -137108708 + MLT1A2 LTR MaLR 4 374 0 252 332 71 37 chr6 45307129 45307397 -137107845 - L2 LINE L2 -1816 1498 1222 509 298 106 11 chr6 45307771 45307959 -137107283 + MIR SINE MIR 51 256 -6 275 232 313 9 chr6 45308036 45308148 -137107094 - MER5A DNA MER1_type -10 179 34 * 307 277 12 12 chr6 45308086 45308169 -137107073 + MER5B DNA MER1_type 96 178 0 284 182 0 61 chr6 45308742 45308808 -137106434 + L2 LINE L2 3252 3313 0 223 333 91 10 chr6 45308815 45308914 -137106328 + L2 LINE L2 3149 3255 -17 231 245 0 0 chr6 45309282 45309331 -137105911 + (TA)n Simple_repeat Simple_repeat 2 50 0 1166 148 57 17 chr6 45309340 45309546 -137105696 - L1MD2 LINE L1 -2 6357 6140 198 0 0 0 chr6 45309546 45309568 -137105674 + (TG)n Simple_repeat Simple_repeat 2 23 0 1166 148 57 17 chr6 45309568 45309591 -137105651 - L1MD2 LINE L1 -219 6140 6119 801 192 113 30 chr6 45309656 45309859 -137105383 - L1MD2 LINE L1 -183 6176 5957 679 126 0 9 chr6 45309861 45309972 -137105270 - L1MD2 LINE L1 -440 5919 5810 6836 203 18 13 chr6 45309977 45312540 -137102702 - L1MC2 LINE L1 -184 6160 3584 812 238 38 0 chr6 45312562 45312797 -137102445 - L1M4 LINE L1 -1966 4416 4173 26 30 0 0 chr6 45313159 45313192 -137102050 + AT_rich Low_complexity Low_complexity 1 33 0 1682 79 19 5 chr6 45313272 45313487 -137101755 - AluSc SINE Alu -91 218 1 421 345 149 7 chr6 45313914 45314062 -137101180 + MIR3 SINE MIR 16 184 -24 202 318 64 18 chr6 45317458 45317568 -137097674 + MIR SINE MIR 118 232 -30 265 245 0 0 chr6 45317586 45317639 -137097603 + (TTG)n Simple_repeat Simple_repeat 2 54 0 201 308 47 28 chr6 45318741 45318848 -137096394 - MIR SINE MIR -1 261 153 298 300 0 45 chr6 45319306 45319416 -137095826 - MIR3 SINE MIR -5 203 99 338 329 43 7 chr6 45319476 45319616 -137095626 + MIR SINE MIR 2 146 -116 23 68 0 0 chr6 45320418 45320462 -137094780 + AT_rich Low_complexity Low_complexity 1 44 0 2965 38 3 3 chr6 45321858 45322225 -137093017 + L1PA4 LINE L1 5789 6155 0 3393 224 28 26 chr6 45322728 45323558 -137091684 + L1MB7 LINE L1 15 845 -5697 439 248 10 0 chr6 45323584 45323685 -137091557 - L1M4 LINE L1 -4670 1714 1613 * 442 264 0 0 chr6 45323681 45323787 -137091455 + L1MB7 LINE L1 4698 4803 -1841 * 4171 181 34 22 chr6 45323784 45325408 -137089834 + L1MB7 LINE L1 5031 6672 -10 2301 11 0 0 chr6 45326049 45326311 -137088931 - L1P LINE L1 -2319 3827 3566 3199 39 0 0 chr6 45326311 45326693 -137088549 + L1PA5 LINE L1 5763 6146 -8 27 0 0 0 chr6 45326693 45326720 -137088522 + AT_rich Low_complexity Low_complexity 1 27 0 181 315 121 55 chr6 45326907 45327072 -137088170 - L3 LINE CR1 -1 1576 1401 2251 99 3 16 chr6 45328274 45328578 -137086664 - AluSx SINE Alu -12 300 1 2201 92 0 67 chr6 45328582 45328910 -137086332 - AluSx SINE Alu -6 306 1 270 238 150 0 chr6 45328960 45329040 -137086202 + MLT1K LTR MaLR 497 588 0 1249 157 126 20 chr6 45329455 45329734 -137085508 + AluJo SINE Alu 1 306 0 423 0 0 0 chr6 45330291 45330338 -137084904 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 217 340 62 21 chr6 45330564 45330661 -137084581 + L3b LINE CR1 1480 1580 -3 278 139 40 50 chr6 45331029 45331130 -137084112 + (TTATA)n Simple_repeat Simple_repeat 1 100 0 2204 96 11 0 chr6 45332810 45333133 -137082109 + AluSp SINE Alu 2 327 0 352 226 78 21 chr6 45333277 45333410 -137081832 - MIR SINE MIR -61 147 16 394 303 37 83 chr6 45334785 45335109 -137080133 + L2 LINE L2 1394 1702 -1612 709 280 126 54 chr6 45335391 45336508 -137078734 - L1MC4a LINE L1 -747 5399 4628 302 293 32 49 chr6 45336750 45336873 -137078369 + MER102b DNA MER1_type 188 308 -33 190 411 105 18 chr6 45336904 45337237 -137078005 + L2 LINE L2 2607 2968 -346 2469 77 0 6 chr6 45337509 45337822 -137077420 + AluSp SINE Alu 1 311 -2 572 281 94 26 chr6 45339487 45339679 -137075563 - L3b LINE CR1 -46 1537 1333 2703 91 8 3 chr6 45340033 45340406 -137074836 + THE1C LTR MaLR 1 375 0 846 124 0 0 chr6 45340588 45340709 -137074533 + FLAM_C SINE Alu 1 121 -12 25 31 0 0 chr6 45341752 45341784 -137073458 + AT_rich Low_complexity Low_complexity 1 32 0 180 282 26 26 chr6 45342360 45342438 -137072804 + L2 LINE L2 2649 2726 -588 490 198 0 0 chr6 45343189 45343275 -137071967 + FLAM_A SINE Alu 38 123 -19 1597 155 45 0 chr6 45343455 45343719 -137071523 - AluJb SINE Alu -2 310 35 331 191 7 163 chr6 45344556 45344703 -137070539 - L2 LINE L2 -89 3224 3101 17327 135 50 29 chr6 45345331 45348374 -137066868 - Ricksha DNA DNA -8 3238 26 2572 146 26 5 chr6 45348374 45348791 -137066451 + MSTB LTR MaLR 1 426 0 17327 135 50 29 chr6 45348791 45348815 -137066427 - Ricksha DNA DNA -3220 26 4 457 373 8 31 chr6 45349003 45349258 -137065984 - L3 LINE CR1 -15 1562 1314 22 35 0 0 chr6 45349336 45349365 -137065877 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 45349454 45349479 -137065763 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr6 45349566 45349599 -137065643 + AT_rich Low_complexity Low_complexity 1 33 0 1755 134 87 68 chr6 45350867 45351247 -137063995 - Tigger2a DNA MER2_type -47 387 1 303 315 50 55 chr6 45351557 45351738 -137063504 - L2 LINE L2 -17 3296 3117 1996 146 54 32 chr6 45352288 45352713 -137062529 + MER6A DNA MER2_type 2 495 -370 885 142 0 0 chr6 45352713 45352840 -137062402 - FLAM_C SINE Alu -5 128 2 1996 146 54 32 chr6 45352840 45352954 -137062288 + MER6A DNA MER2_type 495 605 0 206 235 188 24 chr6 45352966 45353051 -137062191 - MIR SINE MIR 0 262 164 408 295 167 46 chr6 45353072 45353101 -137062141 - LTR67 LTR ERVL -35 522 498 1479 195 49 46 chr6 45353101 45353470 -137061772 - MLT1A2 LTR MaLR -4 370 1 408 295 167 46 chr6 45353470 45353806 -137061436 - LTR67 LTR ERVL -59 498 113 257 311 92 12 chr6 45353986 45354150 -137061092 + MER112 DNA MER1_type 75 251 -9 245 315 60 55 chr6 45354178 45354378 -137060864 - L2 LINE L2 -673 2641 2441 204 301 0 24 chr6 45354590 45354673 -137060569 + A-rich Low_complexity Low_complexity 5 85 0 790 308 67 39 chr6 45355131 45355521 -137059721 + L3 LINE CR1 473 873 -704 552 304 35 5 chr6 45355535 45355736 -137059506 + L1MEd LINE L1 1 207 -5912 1736 275 59 53 chr6 45355863 45357056 -137058186 + L1MEd LINE L1 413 1732 -758 486 235 17 0 chr6 45357580 45357699 -137057543 + MER46C DNA MER2_type 126 246 -92 349 328 101 4 chr6 45357740 45357987 -137057255 + L1MEd LINE L1 2333 2603 -3526 315 0 0 0 chr6 45358067 45358102 -137057140 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4377 4 0 0 chr6 45358102 45358589 -137056653 - L1HS LINE L1 -11 6144 5658 2754 3 0 0 chr6 45358581 45358887 -137056355 + L1P1 LINE L1 5362 5667 -488 * 240 261 15 15 chr6 45358908 45358973 -137056269 + L3 LINE CR1 1500 1564 -13 190 241 74 19 chr6 45360053 45360107 -137055135 + L2 LINE L2 2932 2988 -325 2436 83 0 6 chr6 45360164 45360476 -137054766 - AluY SINE Alu -1 310 1 2086 134 3 0 chr6 45360566 45360865 -137054377 - AluSx SINE Alu -10 302 3 234 0 0 0 chr6 45361663 45361689 -137053553 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1296 303 173 30 chr6 45362560 45362741 -137052501 - L2 LINE L2 0 3313 3159 1958 171 0 3 chr6 45362741 45363085 -137052157 - MER7A DNA MER2_type -2 344 4 1296 303 173 30 chr6 45363085 45363139 -137052103 - L2 LINE L2 -154 3159 3114 2293 109 0 0 chr6 45363139 45363432 -137051810 - AluSg SINE Alu -12 298 6 1296 303 173 30 chr6 45363432 45364322 -137050920 - L2 LINE L2 -199 3114 2030 808 319 62 30 chr6 45364380 45364753 -137050489 - LTR16B LTR ERVL -79 385 1 2004 313 50 34 chr6 45364753 45364779 -137050463 - L2 LINE L2 -1280 2034 2010 2129 123 3 13 chr6 45364779 45364915 -137050327 + AluSq SINE Alu 1 137 -176 2070 102 7 3 chr6 45364915 45365200 -137050042 + AluSp SINE Alu 22 307 -6 2129 123 3 13 chr6 45365200 45365372 -137049870 + AluSq SINE Alu 137 306 -7 2004 313 50 34 chr6 45365372 45366292 -137048950 - L2 LINE L2 -1304 2010 1073 501 269 118 21 chr6 45368258 45368444 -137046798 + MIR SINE MIR 7 210 -52 817 274 143 43 chr6 45368444 45368912 -137046330 - LTR33 LTR ERVL 0 521 7 1071 173 12 74 chr6 45369464 45369707 -137045535 + AluJo SINE Alu 85 312 0 1644 169 32 4 chr6 45369782 45370086 -137045156 + AluJb SINE Alu 1 312 0 1529 177 6 59 chr6 45370147 45370469 -137044773 - AluJo SINE Alu -5 307 3 26 64 0 0 chr6 45370541 45370588 -137044654 + AT_rich Low_complexity Low_complexity 1 47 0 958 125 80 6 chr6 45371516 45371692 -137043550 - MER53 DNA DNA 0 189 1 195 218 146 0 chr6 45371981 45372036 -137043206 + L3 LINE CR1 1511 1573 -4 704 108 0 0 chr6 45372621 45372723 -137042519 + AluSc SINE Alu 194 295 -14 722 267 53 10 chr6 45373868 45374074 -137041168 + MLT1J LTR MaLR 1 215 -296 9318 173 25 11 chr6 45374080 45376853 -137038389 + L1PA16 LINE L1 3343 6146 -20 722 280 72 34 chr6 45376878 45377171 -137038071 + MLT1J LTR MaLR 205 508 -3 31 0 0 0 chr6 45377201 45377232 -137038010 + AT_rich Low_complexity Low_complexity 1 31 0 313 279 187 39 chr6 45377781 45378072 -137037170 + MLT1K LTR MaLR 161 586 -2 2136 123 0 16 chr6 45378097 45378407 -137036835 - AluSx SINE Alu -7 305 1 1320 254 62 56 chr6 45379588 45380053 -137035189 - L2 LINE L2 -5 3308 2841 6179 192 40 64 chr6 45380127 45380571 -137034671 - MER45R DNA AcHobo 0 1581 1128 1514 102 25 4 chr6 45380571 45380815 -137034427 - L1MA2 LINE L1 0 6304 6056 6179 192 40 64 chr6 45380815 45381277 -137033965 - MER45R DNA AcHobo -453 1128 657 1999 110 53 3 chr6 45381277 45381559 -137033683 - AluSx SINE Alu -16 296 1 6179 192 40 64 chr6 45381559 45382211 -137033031 - MER45R DNA AcHobo -924 657 59 467 198 12 0 chr6 45382231 45382317 -137032925 - L2 LINE L2 -512 2802 2716 581 133 0 0 chr6 45383168 45383251 -137031991 - AluJ/FLAM SINE Alu -219 93 11 253 245 0 0 chr6 45383312 45383361 -137031881 + L2 LINE L2 3221 3269 -3 389 331 32 0 chr6 45383704 45383828 -137031414 - L2 LINE L2 -1320 1994 1867 436 306 60 15 chr6 45383869 45384055 -137031187 + MIR SINE MIR 21 211 -51 22 0 0 0 chr6 45384071 45384093 -137031149 + AT_rich Low_complexity Low_complexity 1 22 0 669 243 31 125 chr6 45384738 45384896 -137030346 - MIR SINE MIR -1 261 141 2176 116 3 0 chr6 45384896 45385190 -137030052 + AluSx SINE Alu 1 295 -17 669 243 31 125 chr6 45385190 45385319 -137029923 - MIR SINE MIR -121 141 1 422 250 0 0 chr6 45385443 45385527 -137029715 - MER45 DNA AcHobo -94 84 1 1001 126 126 0 chr6 45385722 45385889 -137029353 - MER5A DNA MER1_type -1 188 1 308 289 39 29 chr6 45386084 45386188 -137029054 - L2 LINE L2 -10 3303 3199 1282 258 40 0 chr6 45386191 45386517 -137028725 + LTR16C LTR ERVL 141 479 -12 527 173 16 63 chr6 45387518 45387820 -137027422 - L1MD2 LINE L1 -18 6735 2243 1516 207 39 82 chr6 45387834 45388249 -137026993 - L1MD2 LINE L1 -6126 414 18 333 340 69 5 chr6 45388292 45388495 -137026747 - MIR SINE MIR -13 249 38 2134 126 0 40 chr6 45389783 45390131 -137025111 - MER1B DNA MER1_type -3 334 1 298 295 39 91 chr6 45390935 45391349 -137023893 + HAL1b LINE L1 373 111 -1237 1571 141 47 19 chr6 45391349 45391605 -137023637 + AluJo SINE Alu 38 300 -12 298 295 39 91 chr6 45391605 45391994 -137023248 + HAL1b LINE L1 110 518 -830 911 194 0 12 chr6 45392006 45392166 -137023076 - AluJo SINE Alu -89 223 66 27 49 0 0 chr6 45392319 45392360 -137022882 + AT_rich Low_complexity Low_complexity 1 41 0 181 73 24 49 chr6 45392445 45392486 -137022756 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 343 333 64 23 chr6 45392687 45392951 -137022291 + L1M4 LINE L1 2139 2413 -3733 412 165 48 58 chr6 45393038 45393141 -137022101 - L2 LINE L2 -69 3244 3143 909 80 0 0 chr6 45393141 45393253 -137021989 + AluSg1 SINE Alu 1 112 -197 2042 63 4 11 chr6 45393253 45393524 -137021718 + L1PA6 LINE L1 5884 6152 -2 635 255 90 5 chr6 45393524 45393724 -137021518 - L2 LINE L2 -165 3148 2932 991 217 134 25 chr6 45393755 45394069 -137021173 - L2 LINE L2 -1256 2058 1711 330 281 34 24 chr6 45394888 45395025 -137020217 + MIR SINE MIR 13 155 -61 186 43 0 0 chr6 45395043 45395066 -137020176 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1469 94 10 0 chr6 45396064 45396256 -137018986 - AluSg/x SINE Alu -14 296 103 264 196 0 0 chr6 45396772 45396823 -137018419 - L2 LINE L2 0 3272 3222 356 322 86 13 chr6 45397129 45397281 -137017961 - MIR3 SINE MIR -13 195 33 1818 241 72 66 chr6 45397328 45398313 -137016929 + L2 LINE L2 2328 3313 0 28 29 0 0 chr6 45398377 45398412 -137016830 + AT_rich Low_complexity Low_complexity 1 35 0 2408 96 0 10 chr6 45398503 45398815 -137016427 + AluSx SINE Alu 1 309 -3 1834 164 30 3 chr6 45399020 45399324 -137015918 + AluJb SINE Alu 1 312 0 2381 106 0 10 chr6 45399595 45399907 -137015335 + AluSx SINE Alu 1 309 -3 1072 195 5 15 chr6 45400367 45400567 -137014675 + AluJo SINE Alu 108 305 -7 1049 165 14 58 chr6 45400571 45400849 -137014393 - MER33 DNA MER1_type -69 255 1 239 254 30 15 chr6 45401942 45402009 -137013233 + MIR SINE MIR 52 119 -89 371 327 105 0 chr6 45402148 45402310 -137012932 + MIR SINE MIR 19 197 -65 3331 78 0 15 chr6 45404004 45404463 -137010779 + L1PA7 LINE L1 5701 6152 -2 577 221 76 0 chr6 45404488 45404633 -137010609 + MIR SINE MIR 57 212 -50 2429 72 0 10 chr6 45404728 45405033 -137010209 + AluY SINE Alu 2 303 -8 24 0 0 0 chr6 45405763 45405787 -137009455 + GC_rich Low_complexity Low_complexity 1 24 0 1739 102 20 12 chr6 45406258 45406512 -137008730 + AluJb SINE Alu 1 256 -56 3367 163 127 59 chr6 45406748 45407619 -137007623 + L1MD2 LINE L1 5378 6308 -51 2056 155 0 0 chr6 45407644 45407947 -137007295 - AluJb SINE Alu -9 303 1 2628 191 34 64 chr6 45407948 45409033 -137006209 + L1ME1 LINE L1 5176 6155 -9 588 290 184 51 chr6 45409092 45409757 -137005485 - L2 LINE L2 -830 2484 1732 216 340 96 0 chr6 45409878 45409972 -137005270 - L2 LINE L2 -2204 1110 1008 447 267 37 30 chr6 45410130 45410265 -137004977 + MIR SINE MIR 55 190 -72 236 297 14 0 chr6 45410402 45410476 -137004766 - Charlie8 DNA MER1_type -2 2415 2341 204 40 0 0 chr6 45410969 45410994 -137004248 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2008 121 50 3 chr6 45411444 45411726 -137003516 + AluSx SINE Alu 1 295 -17 568 339 58 64 chr6 45412974 45413805 -137001437 + L2 LINE L2 2430 3272 0 180 0 0 0 chr6 45414011 45414031 -137001211 + (A)n Simple_repeat Simple_repeat 1 20 0 251 385 211 15 chr6 45414382 45414642 -137000600 + L2 LINE L2 2956 3266 -6 889 270 123 29 chr6 45414699 45415073 -137000169 - LTR16C LTR ERVL 0 491 83 265 298 48 39 chr6 45416207 45416311 -136998931 + L2 LINE L2 3164 3268 -4 1530 233 69 27 chr6 45416325 45416950 -136998292 - L1ME1 LINE L1 -14 6152 5463 40937 50 4 4 chr6 45416964 45423126 -136992116 + L1PA4 LINE L1 1 6155 0 947 206 100 68 chr6 45423124 45423254 -136991988 - L1ME1 LINE L1 -743 5403 5279 * 2337 87 0 3 chr6 45423254 45423554 -136991688 - AluY SINE Alu -12 299 1 947 206 100 68 chr6 45423554 45423904 -136991338 - L1ME1 LINE L1 -867 5279 4963 198 0 0 0 chr6 45425325 45425347 -136989895 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 233 154 31 62 chr6 45425349 45425414 -136989828 + MLT1H LTR MaLR 487 549 0 477 342 70 8 chr6 45426466 45426709 -136988533 + L3 LINE CR1 1203 1460 -117 2577 145 14 16 chr6 45427066 45427501 -136987741 + Tigger2a DNA MER2_type 1 434 0 201 39 0 0 chr6 45427773 45427799 -136987443 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 332 336 86 3 chr6 45427835 45428207 -136987035 - L1MEc LINE L1 -4645 1665 1263 2735 90 0 43 chr6 45428232 45428499 -136986743 - MER4A LTR ERV1 0 664 420 2461 87 0 0 chr6 45428499 45428808 -136986434 - AluY SINE Alu 0 311 3 2735 90 0 43 chr6 45428808 45428962 -136986280 - MER4A LTR ERV1 -244 420 261 405 90 15 15 chr6 45428962 45429029 -136986213 - MER4A LTR ERV1 -566 98 32 357 298 31 98 chr6 45429030 45429356 -136985886 - L1MEc LINE L1 -5034 1085 782 228 163 143 0 chr6 45429464 45429513 -136985729 + MIR SINE MIR 122 177 -85 22 35 0 0 chr6 45429584 45429613 -136985629 + AT_rich Low_complexity Low_complexity 1 29 0 955 286 0 24 chr6 45429765 45430020 -136985222 - MIR SINE MIR -1 261 13 892 232 156 39 chr6 45430200 45430651 -136984591 - MLT1G LTR MaLR -19 571 66 2033 101 7 17 chr6 45431635 45431933 -136983309 - AluSx SINE Alu -17 295 1 243 0 0 0 chr6 45432177 45432204 -136983038 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3326 110 129 91 chr6 45432323 45432646 -136982596 + MER51A-int LTR ERV1 7051 7360 -456 195 42 0 0 chr6 45432646 45432670 -136982572 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 3326 110 129 91 chr6 45432670 45433083 -136982159 + MER51A-int LTR ERV1 7360 7815 -1 318 137 178 14 chr6 45433087 45433160 -136982082 + MER51A LTR ERV1 5 89 -545 1621 97 4 54 chr6 45433177 45433229 -136982013 + MER51A LTR ERV1 389 442 -192 351 0 0 0 chr6 45433229 45433268 -136981974 + (TG)n Simple_repeat Simple_repeat 2 40 0 2267 59 0 14 chr6 45433268 45433556 -136981686 - AluY SINE Alu -27 284 1 1621 97 4 54 chr6 45433556 45433761 -136981481 + MER51A LTR ERV1 440 634 0 1419 100 14 0 chr6 45433761 45433979 -136981263 - MER41B LTR ERV1 -414 221 1 651 355 57 11 chr6 45435214 45435563 -136979679 + L2 LINE L2 2165 2529 -785 3100 216 60 8 chr6 45435585 45436547 -136978695 - L1ME1 LINE L1 -5 6161 5153 2913 104 9 2 chr6 45436583 45437024 -136978218 - L1PB2 LINE L1 0 6151 5708 1240 265 23 54 chr6 45437211 45437599 -136977643 + LTR16B LTR ERVL 1 400 -64 2202 177 26 19 chr6 45437599 45438022 -136977220 + MSTB LTR MaLR 1 426 0 1240 265 23 54 chr6 45438022 45438034 -136977208 + LTR16B LTR ERVL 400 411 -53 1974 159 0 28 chr6 45438034 45438354 -136976888 - AluSx SINE Alu 0 312 2 1240 265 23 54 chr6 45438354 45438431 -136976811 + LTR16B LTR ERVL 411 464 0 1950 136 10 10 chr6 45438693 45438995 -136976247 - AluSc SINE Alu -7 302 1 186 295 54 62 chr6 45439234 45439363 -136975879 - MER5A DNA MER1_type -15 174 47 528 373 12 12 chr6 45439385 45439640 -136975602 + MIR SINE MIR 7 261 -1 504 253 122 29 chr6 45439984 45440180 -136975062 + MIR SINE MIR 37 250 -12 26 50 0 0 chr6 45441138 45441178 -136974064 + AT_rich Low_complexity Low_complexity 1 40 0 1237 199 15 38 chr6 45441416 45441682 -136973560 + MER89 LTR ERV1 295 554 -5 21 57 0 0 chr6 45441682 45441717 -136973525 + AT_rich Low_complexity Low_complexity 1 35 0 6650 62 8 7 chr6 45441778 45442135 -136973107 - L1PA8A LINE L1 0 6131 5776 213 39 0 0 chr6 45442135 45442161 -136973081 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2326 82 0 0 chr6 45442161 45442441 -136972801 - AluSg SINE Alu -30 280 1 6650 62 8 7 chr6 45442441 45443418 -136971824 - L1PA8A LINE L1 -354 5777 4812 2296 120 0 3 chr6 45443596 45443905 -136971337 + AluSx SINE Alu 1 308 -4 1156 250 188 9 chr6 45443951 45444387 -136970855 - MLT1H1 LTR MaLR -10 545 32 259 246 108 85 chr6 45444882 45445012 -136970230 + MER20B DNA MER1_type 4 136 -647 6017 50 2 20 chr6 45447343 45448185 -136967057 - L1PA5 LINE L1 -691 5463 4638 5788 36 1 0 chr6 45448185 45448856 -136966386 + L1PA5 LINE L1 5470 6142 -12 380 44 131 6 chr6 45448856 45449016 -136966226 + (TA)n Simple_repeat Simple_repeat 1 180 0 395 239 31 54 chr6 45450375 45450505 -136964737 - L3b LINE CR1 -172 1411 1285 215 255 0 0 chr6 45452126 45452177 -136963065 + (TA)n Simple_repeat Simple_repeat 1 51 0 2033 151 3 0 chr6 45452203 45452502 -136962740 + AluSx SINE Alu 3 302 -10 733 322 4 4 chr6 45452508 45452750 -136962492 - MIR SINE MIR -17 245 4 21 0 0 0 chr6 45453104 45453125 -136962117 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 45454257 45454280 -136960962 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 357 221 73 44 chr6 45455269 45455338 -136959904 - LTR16A1 LTR ERVL 0 457 391 2177 128 0 3 chr6 45455338 45455642 -136959600 + AluSx SINE Alu 1 303 -9 357 221 73 44 chr6 45455642 45455708 -136959534 - LTR16A1 LTR ERVL -66 391 318 206 211 0 0 chr6 45456621 45456659 -136958583 + (ATG)n Simple_repeat Simple_repeat 1 38 0 551 217 29 29 chr6 45456718 45456856 -136958386 - MIR SINE MIR -111 151 14 180 77 0 0 chr6 45457155 45457181 -136958061 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 257 223 10 107 chr6 45458225 45458328 -136956914 + MIR SINE MIR 40 132 -76 415 247 130 65 chr6 45458584 45458831 -136956411 + L2 LINE L2 3050 3312 -1 401 256 39 31 chr6 45458979 45459108 -136956134 + MLT1J LTR MaLR 382 511 0 464 247 26 19 chr6 45459910 45460064 -136955178 - MIR3 SINE MIR -4 204 50 281 259 7 167 chr6 45460222 45460283 -136954959 - MIR SINE MIR -12 250 181 2307 101 0 3 chr6 45460283 45460580 -136954662 - AluSg SINE Alu -14 296 1 281 259 7 167 chr6 45460580 45460811 -136954431 - MIR SINE MIR -81 181 5 656 174 61 15 chr6 45460884 45461016 -136954226 + AluJb SINE Alu 1 138 -174 2853 191 62 55 chr6 45461016 45462482 -136952760 - L1M4 LINE L1 -360 6316 3184 254 140 20 0 chr6 45462478 45462528 -136952714 + L1 LINE L1 2368 2418 -3728 * 346 222 23 22 chr6 45462516 45462606 -136952636 + L1 LINE L1 2651 2741 -3405 339 25 0 0 chr6 45462607 45462647 -136952595 + (CA)n Simple_repeat Simple_repeat 2 41 0 974 223 122 60 chr6 45462652 45462681 -136952561 - MLT1A1 LTR MaLR -6 359 333 2235 157 3 0 chr6 45462681 45463026 -136952216 - MER7A DNA MER2_type -1 345 2 974 223 122 60 chr6 45463026 45463332 -136951910 - MLT1A1 LTR MaLR -32 333 3 1429 264 60 11 chr6 45463357 45463909 -136951333 - L1ME LINE L1 -3494 3150 2608 2120 241 64 49 chr6 45463961 45464720 -136950522 - L1ME LINE L1 -4704 1942 1231 2453 89 0 0 chr6 45464720 45465023 -136950219 - AluY SINE Alu -8 303 1 2120 241 64 49 chr6 45465023 45465302 -136949940 - L1ME LINE L1 -5415 1231 958 436 267 0 15 chr6 45465393 45465524 -136949718 - L1ME LINE L1 -6335 207 79 447 257 13 33 chr6 45466484 45466636 -136948606 + MER103 DNA DNA 13 161 -5 355 255 53 0 chr6 45466892 45466986 -136948256 + L2 LINE L2 3143 3241 -31 396 71 0 0 chr6 45467558 45467614 -136947628 + (TG)n Simple_repeat Simple_repeat 1 56 0 205 231 205 0 chr6 45468549 45468627 -136946615 - MIR SINE MIR -92 116 23 1903 168 24 74 chr6 45469235 45469653 -136945589 - MLT2D LTR ERVL -17 397 1 209 214 54 0 chr6 45469684 45469740 -136945502 - MIR SINE MIR -168 94 36 1681 178 0 17 chr6 45470357 45470649 -136944593 + AluJo SINE Alu 1 287 -25 2469 51 0 3 chr6 45470774 45471103 -136944139 - AluY SINE Alu 0 311 1 284 271 28 28 chr6 45471112 45471219 -136944023 - MLT1J LTR MaLR -293 218 112 186 43 0 0 chr6 45472151 45472174 -136943068 + (A)n Simple_repeat Simple_repeat 1 23 0 30 27 0 0 chr6 45472305 45472342 -136942900 + AT_rich Low_complexity Low_complexity 1 37 0 185 146 21 0 chr6 45473197 45473245 -136941997 + (TG)n Simple_repeat Simple_repeat 2 50 0 322 322 107 7 chr6 45475970 45476119 -136939123 + MIR SINE MIR 85 248 -14 198 0 0 0 chr6 45477143 45477165 -136938077 + (A)n Simple_repeat Simple_repeat 1 22 0 286 320 50 0 chr6 45477316 45477416 -136937826 + MIR SINE MIR 96 200 -62 800 221 41 6 chr6 45478030 45478202 -136937040 + MER5B DNA MER1_type 1 178 0 431 276 41 0 chr6 45478273 45478396 -136936846 + L2 LINE L2 3186 3313 0 1097 227 0 0 chr6 45478438 45478632 -136936610 + MER58A DNA MER1_type 31 224 0 553 282 35 17 chr6 45478688 45478862 -136936380 + MIR SINE MIR 9 185 -77 193 270 100 30 chr6 45479213 45479313 -136935929 + L2 LINE L2 2929 3035 -237 891 288 77 33 chr6 45481065 45481492 -136933750 + LTR16A LTR ERVL 1 446 -4 589 226 45 7 chr6 45481492 45481647 -136933595 + MIR SINE MIR 66 226 -36 759 235 83 48 chr6 45482806 45483036 -136932206 + MIR SINE MIR 18 255 -7 1711 196 89 5 chr6 45483218 45483610 -136931632 - L1ME3A LINE L1 -191 5979 5555 456 327 0 43 chr6 45483776 45483987 -136931255 - MIR SINE MIR -37 225 24 376 254 54 39 chr6 45484214 45484344 -136930898 + MER94 DNA DNA 2 133 -1 207 324 88 0 chr6 45484606 45484708 -136930534 + L2 LINE L2 3203 3313 0 285 29 0 0 chr6 45484850 45484884 -136930358 + (TG)n Simple_repeat Simple_repeat 1 34 0 259 345 136 5 chr6 45484964 45485170 -136930072 + MIR SINE MIR 28 260 -2 802 245 120 9 chr6 45485518 45485751 -136929491 + MIR SINE MIR 4 262 0 2274 92 7 0 chr6 45485885 45486179 -136929063 - AluY SINE Alu -15 296 1 909 265 37 55 chr6 45487072 45487528 -136927714 + L1ME LINE L1 5375 5822 -340 2086 138 0 0 chr6 45487848 45488144 -136927098 - AluSx SINE Alu -16 296 1 28 48 0 0 chr6 45488147 45488189 -136927053 + AT_rich Low_complexity Low_complexity 1 42 0 238 204 20 0 chr6 45488494 45488543 -136926699 + HSMAR1 DNA Mariner 1238 1287 0 640 294 107 19 chr6 45489301 45489610 -136925632 - LTR33 LTR ERVL -2 519 184 522 244 77 117 chr6 45490175 45490630 -136924612 - MLT1J LTR MaLR -74 437 1 816 289 36 7 chr6 45490898 45491206 -136924036 + LTR16A1 LTR ERVL 139 455 -2 351 0 0 0 chr6 45491502 45491541 -136923701 + (TG)n Simple_repeat Simple_repeat 1 39 0 837 284 47 4 chr6 45492574 45492806 -136922436 - MIR SINE MIR 0 262 21 324 70 0 0 chr6 45493474 45493517 -136921725 + (TG)n Simple_repeat Simple_repeat 2 44 0 1473 84 0 130 chr6 45494370 45494631 -136920611 - MER30 DNA MER1_type 0 230 4 250 357 33 10 chr6 45494829 45494951 -136920291 - MIR SINE MIR -67 141 23 890 219 16 5 chr6 45495345 45495532 -136919710 + MER5A DNA MER1_type 1 189 0 703 301 19 46 chr6 45495644 45495906 -136919336 + MIR SINE MIR 8 262 0 306 0 0 0 chr6 45495979 45496013 -136919229 + (CA)n Simple_repeat Simple_repeat 2 35 0 468 210 30 10 chr6 45496492 45496592 -136918650 - MER5A DNA MER1_type -78 111 10 703 208 127 12 chr6 45496697 45496870 -136918372 - MER20 DNA MER1_type 0 219 27 752 286 38 9 chr6 45497636 45497846 -136917396 - MLT1I LTR MaLR -4 405 190 1928 156 9 21 chr6 45497885 45498212 -136917030 - MLT2D LTR ERVL -2 412 90 780 88 0 0 chr6 45498225 45498327 -136916915 + AluSq/x SINE Alu 2 103 -210 466 200 40 0 chr6 45598885 45598985 -136816257 + MIR SINE MIR 105 208 -54 347 206 262 21 chr6 45599087 45599228 -136816014 + MER5A DNA MER1_type 12 186 -3 399 295 104 12 chr6 45599272 45599445 -136815797 + MIR SINE MIR 51 239 -23 290 274 233 0 chr6 45599971 45600117 -136815125 + MER5A DNA MER1_type 9 188 -1 289 177 32 0 chr6 45600117 45600179 -136815063 - MER5A DNA MER1_type -124 65 2 248 150 0 0 chr6 45600379 45600419 -136814823 + LTR16C LTR ERVL 377 416 -75 264 313 69 30 chr6 45601036 45601167 -136814075 + MIR3 SINE MIR 15 150 -58 338 297 34 0 chr6 45701664 45701782 -136713460 + LTR16C LTR ERVL 1 122 -369 1045 203 129 0 chr6 45701808 45702049 -136713193 + LTR16C LTR ERVL 188 459 -32 1458 199 131 21 chr6 45703634 45703971 -136711271 - MLT1A2 LTR MaLR 0 374 1 1157 248 93 19 chr6 45703990 45704409 -136710833 + LTR33 LTR ERVL 44 493 -28 314 302 130 50 chr6 45704418 45704719 -136710523 + L2 LINE L2 2649 2973 -341 507 292 71 38 chr6 45705639 45705879 -136709363 - L1ME3A LINE L1 -242 5928 5681 846 295 85 33 chr6 45705886 45706252 -136708990 - MLT1I LTR MaLR 0 409 25 239 204 49 17 chr6 45706464 45706530 -136708712 + L1M1 LINE L1 5405 5474 -690 267 242 74 11 chr6 45706932 45707027 -136708215 - L1ME3A LINE L1 -1311 4835 4735 322 264 213 27 chr6 45707225 45707554 -136707688 - L1ME3A LINE L1 -1712 4434 4045 1807 229 110 23 chr6 45707628 45708100 -136707142 - LTR40a LTR ERVL 0 519 7 328 302 190 10 chr6 45708194 45708605 -136706637 - L1ME3A LINE L1 -2369 3777 3293 10542 166 97 9 chr6 45708625 45711859 -136703383 - L1MA3 LINE L1 -1 7723 4206 5097 151 47 70 chr6 45711858 45712857 -136702385 - L1MA3 LINE L1 -6573 992 17 * 3950 182 111 22 chr6 45713083 45714279 -136700963 - L1MA4 LINE L1 0 6300 5003 * 4066 180 108 94 chr6 45714274 45715602 -136699640 - L1 LINE L1 -743 5403 4096 1068 155 0 22 chr6 45715602 45715783 -136699459 - AluSx SINE Alu -15 297 121 234 94 0 0 chr6 45715785 45715817 -136699425 + MADE1 DNA Mariner 44 75 -5 959 126 0 0 chr6 45715818 45715945 -136699297 - AluSx SINE Alu -186 127 1 4066 180 108 94 chr6 45715945 45716573 -136698669 - L1 LINE L1 -2050 4096 3414 2408 126 51 11 chr6 45716573 45716923 -136698319 + THE1B LTR MaLR 1 364 0 4066 180 108 94 chr6 45716923 45717209 -136698033 - L1 LINE L1 -2732 3414 3134 810 108 0 0 chr6 45717497 45717599 -136697643 + AluSg/x SINE Alu 181 282 -30 407 194 108 0 chr6 45717632 45717725 -136697517 - L1 LINE L1 -3108 3038 2936 2066 260 105 54 chr6 45718095 45719796 -136695446 + L1 LINE L1 8 1751 -4284 1094 226 55 35 chr6 45719792 45720137 -136695105 + L1 LINE L1 4729 5080 -954 * 198 263 50 40 chr6 45720469 45720568 -136694674 - MIR SINE MIR -79 183 84 282 208 250 8 chr6 45722103 45722223 -136693019 + LTR33 LTR ERVL 328 476 -45 1028 259 133 8 chr6 45723898 45724295 -136690947 - MLT1C LTR MaLR 0 467 21 299 240 153 13 chr6 45725120 45725270 -136689972 - L1ME LINE L1 -263 5858 5688 940 230 73 41 chr6 45725363 45725475 -136689767 - L1ME2 LINE L1 -9 6155 6048 1679 146 130 3 chr6 45725475 45725783 -136689459 - MER7A DNA MER2_type 0 346 2 940 230 73 41 chr6 45725783 45725987 -136689255 - L1ME2 LINE L1 -116 6048 5829 1596 186 74 40 chr6 45725990 45726367 -136688875 + MSTD LTR MaLR 1 390 -6 1504 197 78 24 chr6 45726561 45726896 -136688346 + MLT1A1 LTR MaLR 5 357 -8 3555 211 114 22 chr6 45726900 45728437 -136686805 + MLT1A1-int LTR MaLR 2 1735 0 1667 188 91 3 chr6 45728447 45728755 -136686487 + MLT1A1 LTR MaLR 21 355 -10 1972 201 93 63 chr6 45730606 45731144 -136684098 + MLT2B3 LTR ERVL 1 554 0 927 191 114 99 chr6 45733053 45733326 -136681916 - AluJo SINE Alu -27 285 9 584 251 181 44 chr6 45733835 45734106 -136681136 - LTR16C LTR ERVL -3 488 181 291 190 0 0 chr6 45734232 45734290 -136680952 + (TA)n Simple_repeat Simple_repeat 1 58 0 310 145 32 16 chr6 45734290 45734352 -136680890 - L1MCa LINE L1 -4358 2068 2006 180 111 0 0 chr6 45734352 45734379 -136680863 + (CA)n Simple_repeat Simple_repeat 1 27 0 267 263 74 63 chr6 45734982 45735157 -136680085 - L3 LINE CR1 -15 1562 1386 375 318 106 20 chr6 45735277 45735475 -136679767 - MIR SINE MIR -1 261 47 1239 163 190 54 chr6 45736175 45736506 -136678736 - MSTC LTR MaLR 0 428 53 1166 276 110 3 chr6 45737036 45737428 -136677814 - LTR16C LTR ERVL -51 440 7 296 250 78 17 chr6 45737703 45737819 -136677423 - MER58B DNA MER1_type 0 341 219 644 155 357 0 chr6 45737866 45738034 -136677208 + MLT1F LTR MaLR 311 538 -4 361 264 83 21 chr6 45738141 45738285 -136676957 + LTR33 LTR ERVL 26 178 -343 257 261 84 93 chr6 45738357 45738460 -136676782 + LTR33 LTR ERVL 306 408 -113 1874 193 55 6 chr6 45738460 45738808 -136676434 + MLT1A1 LTR MaLR 1 365 0 257 261 84 93 chr6 45738808 45738919 -136676323 + LTR33 LTR ERVL 408 518 -3 323 330 119 10 chr6 45740221 45740415 -136674827 + LTR16A LTR ERVL 158 372 -78 429 311 171 8 chr6 45741280 45741531 -136673711 - LTR16A LTR ERVL -41 409 118 784 272 111 22 chr6 45741585 45741956 -136673286 + LTR33 LTR ERVL 107 510 -11 344 290 34 51 chr6 45742201 45742377 -136672865 - LTR16A1 LTR ERVL -17 440 268 292 329 104 25 chr6 45742594 45742910 -136672332 + L1MB3 LINE L1 2 342 -5549 2616 224 158 25 chr6 45743141 45744694 -136670548 + L1MB3 LINE L1 2286 4092 -1878 * 5333 110 59 5 chr6 45744692 45745509 -136669733 + L1PA10 LINE L1 5308 6168 0 3199 196 190 20 chr6 45745503 45747153 -136668089 + L1MB3 LINE L1 4079 6007 0 * 2445 169 68 98 chr6 45747980 45748572 -136666670 - MER21B LTR ERV1 -281 582 9 1896 218 42 66 chr6 45748631 45749173 -136666069 + LTR26B LTR ERV1 1 529 -2 880 280 68 51 chr6 45749603 45750071 -136665171 + LTR26B-int LTR ERV1 601 1076 -5187 354 296 49 19 chr6 45750050 45750212 -136665030 + LTR26B-int LTR ERV1 1443 1609 -5067 * 403 357 63 46 chr6 45750468 45751201 -136664041 + LTR26B-int LTR ERV1 976 1720 -5402 314 321 0 9 chr6 45751597 45751706 -136663536 + LTR26B-int LTR ERV1 1994 2101 -5021 354 308 103 50 chr6 45752216 45752576 -136662666 + LTR26B-int LTR ERV1 2828 3206 -4607 874 336 90 34 chr6 45752806 45753292 -136661950 + LTR26B-int LTR ERV1 3502 3960 -3689 3742 108 67 3 chr6 45753292 45753856 -136661386 + LTR43 LTR ERV1 1 600 -2 874 336 90 34 chr6 45753856 45754135 -136661107 + LTR26B-int LTR ERV1 3960 4780 -2869 255 299 52 0 chr6 45754477 45754574 -136660668 + LTR26B-int LTR ERV1 4751 4852 -1677 374 296 67 17 chr6 45754703 45754882 -136660360 + LTR26B-int LTR ERV1 4953 5140 -1982 6837 197 33 19 chr6 45755383 45756677 -136658565 + L1PA14 LINE L1 2 1313 -6268 7972 106 14 5 chr6 45756720 45757842 -136657400 - L1P3 LINE L1 -5059 1402 270 7600 141 52 21 chr6 45757869 45759689 -136655553 + L1PA14 LINE L1 5300 7191 -408 2062 130 76 17 chr6 45759689 45760043 -136655199 + THE1C LTR MaLR 1 375 0 7600 141 52 21 chr6 45760043 45760453 -136654789 + L1PA14 LINE L1 7191 7587 -12 624 288 43 30 chr6 45762290 45762523 -136652719 + LTR26B-int LTR ERV1 5945 6180 -83 1650 200 53 96 chr6 45762606 45763156 -136652086 + LTR26B LTR ERV1 6 531 0 5928 38 0 1 chr6 45763754 45763767 -136651475 + L1P LINE L1 4186 4198 -1948 8229 21 8 0 chr6 45763767 45765017 -136650225 - L1PA3 LINE L1 0 6155 4902 5928 38 0 1 chr6 45765017 45765713 -136649529 + L1PA3 LINE L1 4198 4894 -1252 3542 133 14 238 chr6 45766889 45768134 -136647108 + MSTA-int LTR MaLR 613 1579 -1 1896 159 128 43 chr6 45768134 45768525 -136646717 + MSTA LTR MaLR 3 426 -2 983 145 13 7 chr6 45768555 45768707 -136646535 + FRAM SINE Alu 1 152 -24 1335 250 234 14 chr6 45768714 45770278 -136644964 + Charlie7 DNA MER1_type 409 2356 -256 5498 160 54 13 chr6 45771778 45772403 -136642839 - L1PB1 LINE L1 -5 6862 6264 1976 120 21 0 chr6 45772403 45772686 -136642556 - AluSx SINE Alu -17 295 7 5498 160 54 13 chr6 45772686 45773956 -136641286 - L1PB1 LINE L1 -603 6264 4887 5727 133 55 16 chr6 45773956 45774939 -136640303 - L1PB1 LINE L1 -5842 1021 1 419 269 44 60 chr6 45777297 45777479 -136637763 - HERV16 LTR ERVL -2579 2417 2239 232 264 7 143 chr6 45778420 45778560 -136636682 + MER5A DNA MER1_type 64 184 -5 374 267 168 24 chr6 45779208 45779500 -136635742 + L1M4 LINE L1 2605 2938 -3208 971 279 138 53 chr6 45779555 45780601 -136634641 + L1ME LINE L1 84 1218 -5205 287 204 134 45 chr6 45780850 45781007 -136634235 + L1ME LINE L1 1582 1752 -5189 285 172 17 0 chr6 45781108 45781166 -136634076 + L1MC2 LINE L1 6275 6333 -11 310 200 75 25 chr6 45781252 45781332 -136633910 + L1ME LINE L1 5371 5454 -1487 597 206 126 33 chr6 45781967 45782181 -136633061 + MER34B LTR ERV1 329 562 -3 275 284 79 63 chr6 45786038 45786292 -136628950 + MER51C-int LTR ERV1 2702 2959 -1688 1614 258 97 39 chr6 45787092 45787709 -136627533 + MER51C-int LTR ERV1 4219 4871 0 356 214 150 29 chr6 45788257 45788430 -136626812 - LTR33 LTR ERVL -2 519 326 2388 144 11 24 chr6 45788431 45788800 -136626442 - THE1B LTR MaLR 0 364 1 812 289 179 14 chr6 45788840 45789280 -136625962 + MER51C LTR ERV1 128 640 0 461 294 28 7 chr6 45789290 45789433 -136625809 - LTR33 LTR ERVL -364 157 12 466 274 96 14 chr6 45789457 45789676 -136625566 + L1ME LINE L1 6308 6544 -413 352 245 126 20 chr6 45789735 45789886 -136625356 + LTR33A LTR ERVL 43 209 -314 2075 148 62 10 chr6 45790199 45790583 -136624659 + LTR23 LTR ERV1 23 426 -11 28257 51 29 3 chr6 45790807 45795133 -136620109 - L1PA5 LINE L1 -13 6141 1707 269 341 38 8 chr6 45795675 45795807 -136619435 + LTR16C LTR ERVL 96 231 -260 259 275 37 37 chr6 45796290 45796399 -136618843 + HERVL32 LTR ERVL 546 654 -4342 397 310 150 34 chr6 45796712 45797038 -136618204 + HERVL32 LTR ERVL 987 1350 -3646 624 319 105 48 chr6 45797453 45797996 -136617246 + HERVL32 LTR ERVL 1967 2540 -3224 429 269 88 29 chr6 45798068 45798239 -136617003 + HERVL32 LTR ERVL 2624 2804 -2192 1955 120 3 40 chr6 45798453 45798754 -136616488 - AluSq SINE Alu -22 291 2 415 286 130 7 chr6 45798874 45799028 -136616214 + HERVL32 LTR ERVL 3165 3337 -2148 4061 83 13 0 chr6 45799759 45800289 -136614953 + L1PA7 LINE L1 5614 6150 -4 2841 162 73 82 chr6 45801336 45802033 -136613209 + LTR8 LTR ERV1 1 691 0 434 252 42 0 chr6 45802189 45802308 -136612934 - L1MB7 LINE L1 -16 6168 6045 3782 218 188 25 chr6 45802365 45802421 -136612821 - L1M4c LINE L1 -5221 1325 1279 1172 98 44 0 chr6 45802421 45802604 -136612638 - L1PB1 LINE L1 -1 6150 5960 3782 218 188 25 chr6 45802604 45803778 -136611464 - L1M4c LINE L1 -5267 1279 1 273 283 0 0 chr6 45804412 45804472 -136610770 + L1M4 LINE L1 287 346 -6196 238 127 55 154 chr6 45805583 45805693 -136609549 + L1MC4 LINE L1 6780 6878 -1164 3590 17 15 0 chr6 45806037 45806449 -136608793 - L1PA3 LINE L1 -8 6147 5730 773 221 91 5 chr6 45807060 45807268 -136607974 - MLT1H LTR MaLR -315 234 9 294 294 119 0 chr6 45809357 45809466 -136605776 - MER94 DNA DNA -6 128 7 284 300 131 50 chr6 45809468 45809615 -136605627 + LTR16B LTR ERVL 1 135 -329 270 0 0 0 chr6 45809615 45809645 -136605597 + (CAGGG)n Simple_repeat Simple_repeat 3 32 0 284 300 131 50 chr6 45809645 45809757 -136605485 + LTR16B LTR ERVL 135 281 -183 509 286 127 61 chr6 45809958 45810384 -136604858 + LTR33A LTR ERVL 70 523 0 1107 153 124 20 chr6 45811556 45811805 -136603437 - L1PB4 LINE L1 -6 6150 5876 338 329 164 17 chr6 45812093 45812391 -136602851 + L2 LINE L2 2261 2602 -712 271 290 154 33 chr6 45812431 45812645 -136602597 + L2 LINE L2 2722 2961 -353 772 286 112 29 chr6 45812931 45813316 -136601926 + LTR16B LTR ERVL 41 457 -7 357 318 45 28 chr6 45813620 45813799 -136601443 + HERVL32 LTR ERVL 367 548 -4448 384 300 100 37 chr6 45814435 45814625 -136600617 + HERVL32 LTR ERVL 2948 3149 -2505 290 177 76 51 chr6 45814625 45814704 -136600538 + L1MA10 LINE L1 6193 6273 -61 1123 317 96 53 chr6 45814795 45816274 -136598968 + HERVL32 LTR ERVL 3197 4456 -540 620 325 151 10 chr6 45820178 45820562 -136594680 + LTR16B LTR ERVL 27 464 0 227 283 127 29 chr6 45820677 45820850 -136594392 + L1M4 LINE L1 3690 3879 -2267 365 327 66 46 chr6 45823488 45823957 -136591285 + HERVL32 LTR ERVL 922 1507 -3621 500 309 76 19 chr6 45824139 45824349 -136590893 + HERVL32 LTR ERVL 1688 1909 -3087 2185 115 0 13 chr6 45824984 45825288 -136589954 - AluSq SINE Alu -8 305 6 385 305 65 1 chr6 45825302 45825463 -136589779 + HERVL32 LTR ERVL 2702 2855 -2141 340 313 102 11 chr6 45825822 45825998 -136589244 + HERVL32 LTR ERVL 3351 3542 -2222 326 271 109 28 chr6 45826198 45826460 -136588782 + HERVL32 LTR ERVL 3664 3955 -1699 646 326 61 30 chr6 45826515 45826858 -136588384 + HERVL32 LTR ERVL 4050 4413 -1241 327 164 0 0 chr6 45827901 45827956 -136587286 + MADE1 DNA Mariner 1 55 -25 480 240 69 71 chr6 45829006 45829376 -136585866 + LOR1b LTR ERV1 115 446 -15 325 162 59 0 chr6 45830096 45830164 -136585078 + LTR32 LTR ERVL 17 88 -383 568 194 103 39 chr6 45830175 45830330 -136584912 + LTR32 LTR ERVL 235 399 -72 9681 235 88 60 chr6 45830335 45833751 -136581491 + HERVL32 LTR ERVL 26 3552 -209 209 317 0 0 chr6 45834500 45834582 -136580660 + (CGG)n Simple_repeat Simple_repeat 2 83 0 270 356 51 23 chr6 45835345 45835509 -136579733 + PRIMA41-int LTR ERV1 7187 7360 -396 2006 108 10 17 chr6 45835509 45835804 -136579438 - AluSg SINE Alu -7 303 11 270 356 51 23 chr6 45835804 45835855 -136579387 + PRIMA41-int LTR ERV1 7360 7408 -348 413 209 100 9 chr6 45835871 45835981 -136579261 + HERVL32 LTR ERVL 3299 3418 0 350 130 116 0 chr6 45835981 45836050 -136579192 + LTR32 LTR ERVL 12 88 -383 792 136 125 38 chr6 45836056 45836240 -136579002 + LTR32 LTR ERVL 231 430 -41 1718 167 55 29 chr6 45836240 45836588 -136578654 + THE1B LTR MaLR 6 362 -2 248 227 0 0 chr6 45836590 45836634 -136578608 + LTR32 LTR ERVL 426 469 -2 912 130 15 0 chr6 45836727 45836858 -136578384 - AluSg/x SINE Alu -18 294 162 1236 108 0 0 chr6 45837708 45837875 -136577367 + AluY SINE Alu 136 302 -9 1374 194 145 25 chr6 45838788 45839189 -136576053 + LTR2 LTR ERV1 1 449 0 272 215 41 102 chr6 45845653 45845774 -136569468 + MLT2F LTR ERVL 289 663 0 436 335 21 47 chr6 45846049 45846282 -136568960 + MERVL LTR ERVL 2102 2328 -3436 303 290 80 0 chr6 45847122 45847222 -136568020 + MERVL LTR ERVL 3680 3787 -1698 2338 159 92 9 chr6 45847623 45848081 -136567161 - L1PA14 LINE L1 -12 6149 5654 1207 169 161 46 chr6 45848079 45848682 -136566560 + L1P4 LINE L1 4954 5602 -559 * 649 280 159 33 chr6 45848951 45849373 -136565869 - LTR33 LTR ERVL 0 521 47 265 198 93 58 chr6 45851392 45851478 -136563764 - L1MCa LINE L1 -4918 1646 1558 1080 224 154 23 chr6 45852659 45853312 -136561930 + MER21B LTR ERV1 1 810 -53 4283 206 125 38 chr6 45854928 45854975 -136560267 - L1 LINE L1 -1089 5057 5015 1674 138 46 7 chr6 45854975 45855257 -136559985 - AluSx SINE Alu -19 293 1 4283 206 125 38 chr6 45855257 45856785 -136558457 - L1 LINE L1 -1131 5015 3345 2398 159 144 41 chr6 45856807 45857417 -136557825 + L1PA16 LINE L1 5485 6157 -9 183 310 14 56 chr6 45857975 45858046 -136557196 + L2 LINE L2 3183 3250 -63 284 223 157 25 chr6 45859871 45859992 -136555250 - L1MCa LINE L1 -5843 202 66 180 204 0 68 chr6 45862673 45862717 -136552525 - MIR SINE MIR -6 256 216 311 291 17 34 chr6 45865189 45865306 -136549936 + MER5A DNA MER1_type 40 154 -35 334 276 51 10 chr6 45867347 45867508 -136547734 + MIR SINE MIR 1 168 -40 322 312 37 18 chr6 45867559 45867668 -136547574 - MIR SINE MIR -64 144 34 1041 249 117 14 chr6 45868082 45868432 -136546810 + LTR16B LTR ERVL 77 462 -2 442 176 0 22 chr6 45868575 45868666 -136546576 - LTR33 LTR ERVL -2 519 431 674 264 104 0 chr6 45868731 45868913 -136546329 - LTR33 LTR ERVL -320 201 1 266 287 178 54 chr6 45869133 45869464 -136545778 + L2 LINE L2 2942 3313 0 185 175 150 0 chr6 45870185 45870225 -136545017 - MIR3 SINE MIR -54 154 109 450 287 21 0 chr6 45870986 45871129 -136544113 + LTR16C LTR ERVL 346 491 0 199 333 72 18 chr6 45871663 45871774 -136543468 + L2 LINE L2 2983 3099 -173 346 202 228 67 chr6 45872050 45872243 -136542999 + MLT1J LTR MaLR 3 226 -285 326 206 56 128 chr6 45872304 45872484 -136542758 + MLT1J LTR MaLR 344 510 -1 404 303 86 76 chr6 45873059 45873363 -136541879 + L2 LINE L2 2946 3252 -20 641 242 62 6 chr6 45874886 45875064 -136540178 + MLT1J LTR MaLR 316 503 -8 713 253 40 85 chr6 45875246 45875690 -136539552 + MLT1H LTR MaLR 59 542 0 262 306 56 28 chr6 45875761 45875869 -136539373 + MIR SINE MIR 19 129 -79 1541 187 13 19 chr6 45875984 45876294 -136538948 + AluJo SINE Alu 1 308 -4 693 318 33 85 chr6 45876495 45877036 -136538206 - MER34 LTR ERV1 -29 513 1 192 256 0 0 chr6 45877477 45877520 -136537722 - MIR3 SINE MIR -3 205 163 424 191 114 29 chr6 45877559 45877664 -136537578 - L2 LINE L2 0 3313 3200 237 318 24 12 chr6 45877656 45877741 -136537501 - MIR SINE MIR -103 105 20 * 215 304 11 39 chr6 45877759 45877940 -136537302 + GA-rich Low_complexity Low_complexity 4 179 0 2908 128 16 5 chr6 45878069 45878492 -136536750 - MSTA LTR MaLR 0 428 1 562 317 66 6 chr6 45879163 45879346 -136535896 + MLT1I LTR MaLR 94 287 -122 337 263 40 0 chr6 45879418 45879517 -136535725 + MLT1I LTR MaLR 305 407 -2 506 189 79 31 chr6 45879756 45879883 -136535359 + MIR SINE MIR 89 221 -41 265 245 60 99 chr6 45879897 45880048 -136535194 - MIR SINE MIR -74 188 44 517 233 51 62 chr6 45880568 45880744 -136534498 + MIR SINE MIR 89 262 0 291 315 22 22 chr6 45880751 45880840 -136534402 - MIR3 SINE MIR -54 154 66 666 226 54 27 chr6 45881314 45881500 -136533742 + LTR16A LTR ERVL 260 450 0 317 268 205 0 chr6 45881501 45881613 -136533629 - L2 LINE L2 -560 2754 2620 412 223 34 101 chr6 45882187 45882230 -136533012 + MIR SINE MIR 58 102 -160 2038 176 25 15 chr6 45882230 45882622 -136532620 - MSTD LTR MaLR 0 396 1 412 223 34 101 chr6 45882622 45882726 -136532516 + MIR SINE MIR 102 195 -67 3864 110 106 21 chr6 45882746 45883398 -136531844 + MER39 LTR ERV1 1 707 0 224 346 39 0 chr6 45883660 45883738 -136531504 - MIR SINE MIR -16 246 166 1269 221 43 32 chr6 45883806 45884181 -136531061 + LTR37A LTR ERV1 46 424 -2 193 292 157 11 chr6 45884183 45884272 -136530970 - MIR SINE MIR -69 139 38 4240 195 31 2 chr6 45884687 45885619 -136529623 - L1 LINE L1 -2826 3320 2362 1684 82 8 29 chr6 45885619 45885674 -136529568 + L1PB1 LINE L1 5912 5967 -184 2778 119 28 114 chr6 45885674 45886272 -136528970 - LTR10B LTR ERV1 0 547 1 1684 82 8 29 chr6 45886272 45886460 -136528782 + L1PB1 LINE L1 5967 6151 0 216 97 0 0 chr6 45886476 45886507 -136528735 + (A)n Simple_repeat Simple_repeat 1 31 0 215 272 112 16 chr6 45886958 45887083 -136528159 + L2 LINE L2 3094 3230 -83 212 229 0 21 chr6 45887142 45887190 -136528052 + L2 LINE L2 3267 3313 0 358 317 126 6 chr6 45887222 45887405 -136527837 - MIR SINE MIR -48 214 10 2955 150 51 13 chr6 45887717 45887772 -136527470 - MER34C LTR ERV1 -1 584 533 2991 153 66 82 chr6 45887772 45888511 -136526731 - LTR8A LTR ERV1 0 727 1 2955 150 51 13 chr6 45888511 45888983 -136526259 - MER34C LTR ERV1 -52 533 37 241 376 46 9 chr6 45888983 45889092 -136526150 - L2 LINE L2 -32 3240 3128 812 203 157 25 chr6 45889499 45889696 -136525546 - MER58A DNA MER1_type -1 223 1 334 306 20 14 chr6 45891230 45891362 -136523880 + MIR SINE MIR 18 147 -62 289 350 50 50 chr6 45891709 45891869 -136523373 + MIR SINE MIR 63 222 -40 206 211 155 14 chr6 45891982 45892053 -136523189 + L2 LINE L2 3155 3235 -37 1132 252 166 26 chr6 45892153 45892605 -136522637 + LTR33 LTR ERVL 1 515 -6 243 337 65 11 chr6 45893504 45893596 -136521646 + L2 LINE L2 3124 3220 -52 192 77 0 0 chr6 45894907 45894933 -136520309 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 1927 131 3 7 chr6 45895378 45895676 -136519566 + AluSc SINE Alu 1 297 -12 345 271 136 0 chr6 45895952 45896070 -136519172 - MIR3 SINE MIR -35 173 40 696 241 31 2 chr6 45896109 45896407 -136518835 - LTR16A LTR ERVL -5 445 91 410 313 219 5 chr6 45896995 45897187 -136518055 + MIR SINE MIR 13 245 -17 242 281 146 10 chr6 45898640 45898736 -136516506 + L2 LINE L2 3127 3235 -37 367 211 168 123 chr6 45898872 45899223 -136516019 + LTR16A1 LTR ERVL 79 445 -12 553 248 32 46 chr6 45899283 45899501 -136515741 - LTR16C LTR ERVL -32 459 245 388 250 55 73 chr6 45899576 45899740 -136515502 - LTR16C LTR ERVL -238 253 93 215 273 71 10 chr6 45899829 45899928 -136515314 + L2 LINE L2 2302 2406 -908 1592 234 20 74 chr6 45900723 45901110 -136514132 - L1MA9 LINE L1 -38 6274 5923 1971 148 0 10 chr6 45901110 45901436 -136513806 - AluSx SINE Alu 0 312 3 1592 234 20 74 chr6 45901436 45901590 -136513652 - L1MA9 LINE L1 -389 5923 5762 454 252 42 0 chr6 45901792 45901911 -136513331 - L1MB7 LINE L1 -16 6168 6045 3788 222 186 23 chr6 45901968 45902024 -136513218 - L1M4c LINE L1 -5221 1325 1279 1237 98 44 0 chr6 45902024 45902207 -136513035 - L1PB1 LINE L1 -1 6150 5960 3788 222 186 23 chr6 45902207 45903381 -136511861 - L1M4c LINE L1 -5267 1279 1 271 283 0 0 chr6 45904015 45904075 -136511167 + L1M4 LINE L1 287 346 -6196 253 138 55 147 chr6 45905185 45905294 -136509948 + L1MC4 LINE L1 6780 6878 -1164 1101 65 14 0 chr6 45905638 45905777 -136509465 - L1PA3 LINE L1 -8 6147 6007 374 318 219 5 chr6 45906371 45906563 -136508679 + MIR SINE MIR 13 245 -17 204 284 158 11 chr6 45908015 45908110 -136507132 + L2 LINE L2 3127 3235 -37 380 211 168 123 chr6 45908246 45908597 -136506645 + LTR16A1 LTR ERVL 79 445 -12 516 249 37 46 chr6 45908657 45908874 -136506368 - LTR16C LTR ERVL -32 459 245 388 250 55 73 chr6 45908949 45909113 -136506129 - LTR16C LTR ERVL -238 253 93 215 273 71 10 chr6 45909201 45909300 -136505942 + L2 LINE L2 2302 2406 -908 13405 226 41 33 chr6 45910095 45910482 -136504760 - L1MA9 LINE L1 -38 7295 6913 1971 148 0 10 chr6 45910482 45910808 -136504434 - AluSx SINE Alu 0 312 3 13405 226 41 33 chr6 45910808 45912395 -136502847 - L1MA9 LINE L1 -420 6913 5341 2219 151 112 3 chr6 45912395 45912779 -136502463 + MSTB LTR MaLR 1 426 0 13405 226 41 33 chr6 45912779 45918336 -136496906 - L1MA9 LINE L1 -1992 5341 3 394 296 57 82 chr6 45918526 45918844 -136496398 + L2 LINE L2 2553 2862 -452 231 296 46 9 chr6 45918907 45919015 -136496227 + L2 LINE L2 2966 3077 -195 777 206 24 6 chr6 45919466 45919631 -136495611 + MER5A DNA MER1_type 1 168 -21 361 176 0 15 chr6 45919641 45919709 -136495533 + MER5B DNA MER1_type 1 67 -111 422 260 47 42 chr6 45919964 45920156 -136495086 - L1MC5 LINE L1 -50 7911 7719 315 237 0 43 chr6 45920157 45920250 -136494992 + L1MC4 LINE L1 6615 6703 -1339 405 223 0 0 chr6 45920252 45920346 -136494896 + (TA)n Simple_repeat Simple_repeat 2 95 0 253 303 0 0 chr6 45920349 45920438 -136494804 + L1MC4 LINE L1 6615 6703 -1339 318 247 0 0 chr6 45921089 45921182 -136494060 + (TA)n Simple_repeat Simple_repeat 1 93 0 291 206 125 65 chr6 45921183 45921367 -136493875 - L1MC5 LINE L1 -314 7647 7453 29 60 0 0 chr6 45921568 45921618 -136493624 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 45921713 45921738 -136493504 + AT_rich Low_complexity Low_complexity 1 25 0 376 212 236 30 chr6 45922008 45922173 -136493069 + LTR16A LTR ERVL 1 199 -251 558 181 34 27 chr6 45922219 45922368 -136492874 + LTR16A LTR ERVL 301 450 0 1659 172 62 34 chr6 45922621 45922976 -136492266 - MLT1A1 LTR MaLR 0 365 1 2182 188 23 0 chr6 45923320 45923671 -136491571 - MLT1A1 LTR MaLR -2 363 5 2259 96 0 0 chr6 45924432 45924725 -136490517 - AluSg SINE Alu -17 293 1 26 0 0 0 chr6 45924807 45924833 -136490409 + AT_rich Low_complexity Low_complexity 1 26 0 418 333 84 36 chr6 45925104 45925665 -136489577 + L1M4 LINE L1 3338 3925 -2221 381 322 115 21 chr6 45925796 45926309 -136488933 + L1M4 LINE L1 4028 4588 -1558 3927 138 34 5 chr6 45926818 45927475 -136487767 + L1MA4A LINE L1 5605 6280 -23 1119 243 114 57 chr6 45929400 45929576 -136485666 + MLT2F LTR ERVL 4 168 -495 2079 109 7 0 chr6 45929576 45929876 -136485366 - AluSc SINE Alu 0 302 1 1119 243 114 57 chr6 45929876 45930205 -136485037 + MLT2F LTR ERVL 168 539 -124 3730 295 88 35 chr6 45930320 45932194 -136483048 + HERVL-F LTR ERVL 16 1988 -3666 806 198 62 12 chr6 45932227 45932389 -136482853 + HERVL-F LTR ERVL 2107 2276 -3488 * 3432 216 122 32 chr6 45932371 45933377 -136481865 + ERVL-F LTR ERVL 4634 5730 -34 697 236 6 42 chr6 45933438 45933603 -136481639 - FRAM SINE Alu -12 164 6 576 173 98 15 chr6 45933836 45933969 -136481273 + MLT2F LTR ERVL 1 144 -519 233 125 0 0 chr6 45933994 45934026 -136481216 + MLT2F LTR ERVL 632 663 0 1113 219 53 4 chr6 45934947 45935194 -136480048 - ERVL LTR ERVL -597 5167 4909 1991 261 55 2 chr6 45935520 45936064 -136479178 - HAL1 LINE L1 -636 1871 1299 22 35 0 0 chr6 45936529 45936558 -136478684 + AT_rich Low_complexity Low_complexity 1 29 0 732 239 101 0 chr6 45937145 45937304 -136477938 + MER5B DNA MER1_type 4 178 0 183 309 18 0 chr6 45937304 45937356 -136477886 + MIR3 SINE MIR 153 205 -3 2262 166 61 10 chr6 45937828 45938239 -136477003 - MSTB1 LTR MaLR 0 432 1 5021 210 24 7 chr6 45938239 45939223 -136476019 - MSTB1-int LTR MaLR 0 1651 651 7342 186 50 38 chr6 45939223 45940812 -136474430 + MER52A LTR ERV1 1 1755 0 3031 210 20 15 chr6 45940812 45941137 -136474105 - MSTB1-int LTR MaLR -997 654 332 4850 159 37 13 chr6 45941137 45941902 -136473340 - LTR39 LTR ERV1 0 783 1 3031 210 20 15 chr6 45941902 45942227 -136473015 - MSTB1-int LTR MaLR -1319 332 1 2466 156 30 39 chr6 45942227 45942663 -136472579 - MSTB1 LTR MaLR 0 432 1 258 218 23 58 chr6 45942861 45942948 -136472294 + LTR67 LTR ERVL 459 542 -15 320 264 96 2 chr6 45943052 45943175 -136472067 - MIR SINE MIR -62 146 19 288 386 8 0 chr6 45943554 45943681 -136471561 - MIR3 SINE MIR -11 197 70 537 307 107 25 chr6 45944430 45944674 -136470568 + LTR16C LTR ERVL 97 360 -131 1533 189 30 65 chr6 45944750 45944872 -136470370 - L1MB4 LINE L1 -17 6163 6038 2192 121 0 13 chr6 45944872 45945179 -136470063 - AluSx SINE Alu -7 305 3 1533 189 30 65 chr6 45945179 45945453 -136469789 - L1MB4 LINE L1 -142 6038 5781 407 185 15 0 chr6 45945453 45945518 -136469724 - MER2 DNA MER2_type 0 345 280 20928 165 18 5 chr6 45945537 45950292 -136464950 + L1PA14 LINE L1 1 4824 -2760 9644 167 19 3 chr6 45950393 45952981 -136462261 + L1PA14 LINE L1 4983 7599 0 1213 177 5 0 chr6 45953012 45953221 -136462021 - MER2 DNA MER2_type -135 210 1 1738 167 73 14 chr6 45953221 45953651 -136461591 - L1MB4 LINE L1 -391 5783 5345 1266 232 68 47 chr6 45953751 45954264 -136460978 - L1MB4 LINE L1 -768 5378 4855 2035 166 53 4 chr6 45954538 45954944 -136460298 + MLT2B2 LTR ERVL 1 480 -35 519 66 0 0 chr6 45954944 45955020 -136460222 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 2035 166 53 4 chr6 45955020 45955057 -136460185 + MLT2B2 LTR ERVL 480 514 -1 291 273 0 13 chr6 45955058 45955135 -136460107 + LTR33 LTR ERVL 446 521 0 376 309 9 0 chr6 45955289 45955412 -136459830 + MIR SINE MIR 20 143 -65 2420 15 0 0 chr6 45956617 45956882 -136458360 - L1PA2 LINE L1 -440 5715 5451 2346 118 0 52 chr6 45956878 45957403 -136457839 + L1PA2 LINE L1 5703 6172 0 * 637 297 63 0 chr6 45957823 45957998 -136457244 + MIR SINE MIR 47 232 -30 2148 104 3 0 chr6 45958265 45958554 -136456688 + AluSx SINE Alu 1 290 -22 473 189 3 192 chr6 45958595 45958908 -136456334 - MER112 DNA MER1_type -3 257 4 344 293 121 45 chr6 45959717 45959874 -136455368 - MIR SINE MIR -78 184 16 * 461 265 194 52 chr6 45959865 45960272 -136454970 + L2 LINE L2 2829 3293 -20 264 224 71 12 chr6 45961586 45961671 -136453571 + MIR SINE MIR 127 216 -46 1283 150 45 0 chr6 45961862 45962082 -136453160 - L1MB1 LINE L1 -318 5850 5621 1580 141 0 27 chr6 45962082 45962342 -136452900 + L1MB1 LINE L1 5913 6168 0 2105 82 14 0 chr6 45964513 45964806 -136450436 - AluSg SINE Alu -13 297 1 332 313 104 28 chr6 45965310 45965454 -136449788 + MIR SINE MIR 60 214 -48 1198 292 100 36 chr6 45966690 45967487 -136447755 - L2 LINE L2 0 3313 2464 335 333 137 31 chr6 45967502 45967757 -136447485 - L3 LINE CR1 -38 1539 1258 286 353 188 0 chr6 45968011 45968181 -136447061 + L2 LINE L2 1388 1589 -1725 335 298 56 62 chr6 45968182 45968649 -136446593 + HAL1b LINE L1 151 614 -734 372 283 90 73 chr6 45968654 45968887 -136446355 + HAL1b LINE L1 672 908 -440 876 377 34 20 chr6 45969256 45969847 -136445395 + L1M4 LINE L1 2244 2842 -3304 4834 256 78 15 chr6 45969851 45971518 -136443724 + L1MEc LINE L1 44 1815 -4581 1776 159 15 23 chr6 45971519 45971887 -136443355 - MER47B DNA MER2_type -1 417 1 1041 224 54 33 chr6 45971895 45972226 -136443016 + L1MEc LINE L1 1826 2163 -4233 227 297 0 33 chr6 45974958 45975049 -136440193 + GA-rich Low_complexity Low_complexity 4 91 0 213 250 0 0 chr6 45975543 45975591 -136439651 + (TTA)n Simple_repeat Simple_repeat 1 48 0 654 307 140 37 chr6 45975730 45976167 -136439075 - LTR67 LTR ERVL 0 557 76 295 299 36 51 chr6 45977302 45977439 -136437803 + MIR3 SINE MIR 3 137 -71 418 319 72 6 chr6 45977529 45977695 -136437547 + MIR SINE MIR 79 255 -7 320 223 13 12 chr6 45977963 45978049 -136437193 + MIR SINE MIR 70 154 -62 3128 216 75 34 chr6 45978050 45978849 -136436393 + MER21B LTR ERV1 1 832 -31 545 279 109 6 chr6 45979938 45980121 -136435121 + MIR SINE MIR 2 203 -59 423 0 0 0 chr6 45981926 45981973 -136433269 + (CA)n Simple_repeat Simple_repeat 2 48 0 886 146 63 58 chr6 45983188 45983393 -136431849 + MER3 DNA MER1_type 3 208 -1 280 274 138 42 chr6 45983984 45984188 -136431054 + MIR3 SINE MIR 13 245 -17 250 248 372 0 chr6 45984448 45984561 -136430681 + MIR3 SINE MIR 49 203 -5 511 282 98 36 chr6 45985365 45985670 -136429572 + MER102a DNA MER1_type 7 330 0 255 342 50 17 chr6 45985958 45986078 -136429164 + L3 LINE CR1 1367 1490 -87 238 305 8 78 chr6 45986139 45986267 -136428975 + MIR3 SINE MIR 14 132 -76 314 250 15 0 chr6 45986695 45986763 -136428479 + MIR3 SINE MIR 89 157 -51 675 205 84 12 chr6 45987533 45987699 -136427543 + MER96B DNA MER1_type? 1 178 -239 717 251 37 19 chr6 45988204 45988419 -136426823 + MER20 DNA MER1_type 1 219 0 187 374 34 20 chr6 45988542 45988689 -136426553 - L3b LINE CR1 -100 1483 1335 280 208 19 0 chr6 45989077 45989127 -136426115 - L2 LINE L2 0 3272 3222 182 273 23 0 chr6 45989127 45989171 -136426071 - MER5A DNA MER1_type -2 187 143 259 196 232 21 chr6 45989181 45989287 -136425955 + MER21A LTR ERV1 209 341 -264 249 216 90 90 chr6 45989275 45989386 -136425856 + MER21B LTR ERV1 344 454 -409 * 835 79 9 0 chr6 45989409 45989523 -136425719 - L1PB2 LINE L1 -2 6149 6035 591 266 47 73 chr6 45989523 45989787 -136425455 + MER21A LTR ERV1 471 782 -23 240 250 0 18 chr6 45991514 45991570 -136423672 - L2 LINE L2 -14 3258 3204 333 287 133 14 chr6 45991624 45991767 -136423475 + MIR SINE MIR 97 256 -6 736 246 35 15 chr6 45991912 45992115 -136423127 - L1ME3A LINE L1 -41 6129 5923 486 253 219 11 chr6 45992292 45992470 -136422772 + MIR SINE MIR 44 258 -4 363 310 0 4 chr6 45992472 45992572 -136422670 + MIR SINE MIR 6 102 -111 2629 145 20 5 chr6 45992574 45992980 -136422262 + MSTB LTR MaLR 4 415 -11 505 236 49 8 chr6 45992982 45993105 -136422137 + MIR SINE MIR 134 261 -1 246 62 0 0 chr6 45993115 45993147 -136422095 + (CAT)n Simple_repeat Simple_repeat 2 33 0 261 0 0 0 chr6 45993603 45993632 -136421610 + (CA)n Simple_repeat Simple_repeat 1 29 0 1000 253 49 67 chr6 45994873 45995320 -136419922 + LTR16A1 LTR ERVL 7 445 -12 391 233 4 4 chr6 45996379 45996608 -136418634 + (CA)n Simple_repeat Simple_repeat 1 229 0 195 215 0 0 chr6 45996654 45996719 -136418523 + (CA)n Simple_repeat Simple_repeat 2 66 0 624 279 75 44 chr6 45997231 45997457 -136417785 - MIR SINE MIR -4 258 26 232 250 0 0 chr6 45997612 45997660 -136417582 + (TG)n Simple_repeat Simple_repeat 1 48 0 243 219 48 10 chr6 45998004 45998076 -136417166 - MIR SINE MIR -81 181 107 1383 215 3 16 chr6 45998536 45998852 -136416390 + AluJo SINE Alu 1 312 0 534 300 41 12 chr6 45998982 45999152 -136416090 - MIR SINE MIR -65 197 23 258 286 0 0 chr6 45999184 45999240 -136416002 + MER112 DNA MER1_type 1 56 -204 350 292 71 19 chr6 45999280 45999434 -136415808 + LTR33 LTR ERVL 56 217 -304 1926 132 34 34 chr6 45999488 45999815 -136415427 + THE1B LTR MaLR 1 327 -37 490 241 97 15 chr6 45999957 46000152 -136415090 + LTR33 LTR ERVL 311 521 0 237 336 81 20 chr6 46000303 46000452 -136414790 - MIR3 SINE MIR -28 180 23 395 244 0 0 chr6 46000635 46000717 -136414525 - MIR3 SINE MIR -3 205 124 237 250 102 0 chr6 46001132 46001220 -136414022 + Charlie7 DNA MER1_type 5 101 -2511 522 204 178 13 chr6 46001355 46001512 -136413730 + MER5A DNA MER1_type 1 183 -6 467 269 134 15 chr6 46001633 46001767 -136413475 + MER91A DNA MER1_type 36 185 -11 214 265 20 49 chr6 46001981 46002083 -136413159 + GA-rich Low_complexity Low_complexity 2 100 0 552 75 12 12 chr6 46002222 46002302 -136412940 + MADE1 DNA Mariner 1 80 0 1472 168 67 50 chr6 46002337 46002635 -136412607 + AluJo SINE Alu 1 303 -9 307 235 44 0 chr6 46003629 46003697 -136411545 - MIR3 SINE MIR -23 185 115 192 235 78 20 chr6 46003845 46003896 -136411346 + L2 LINE L2 3219 3272 0 201 269 0 39 chr6 46003899 46003951 -136411291 - MIR SINE MIR -100 108 59 656 277 31 55 chr6 46004013 46004086 -136411156 + MIR SINE MIR 8 81 -181 818 281 83 72 chr6 46004086 46004545 -136410697 + LTR16B LTR ERVL 1 464 0 656 277 31 55 chr6 46004545 46004727 -136410515 + MIR SINE MIR 81 257 -5 281 216 0 40 chr6 46005353 46005417 -136409825 + MIR3 SINE MIR 134 196 -12 882 232 57 5 chr6 46005417 46005628 -136409614 - MER58A DNA MER1_type 0 224 3 388 251 90 71 chr6 46006047 46006258 -136408984 + MLT1K LTR MaLR 374 588 0 1062 240 47 65 chr6 46006406 46006885 -136408357 + MER34B LTR ERV1 10 459 -106 2390 148 49 7 chr6 46006885 46007290 -136407952 + MSTB LTR MaLR 1 422 -4 1062 240 47 65 chr6 46007290 46007396 -136407846 + MER34B LTR ERV1 459 565 0 189 0 0 0 chr6 46007495 46007516 -136407726 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 211 330 59 25 chr6 46008260 46008378 -136406864 + MIR SINE MIR 26 147 -61 420 272 78 35 chr6 46008578 46008764 -136406478 + MIR SINE MIR 43 238 -24 389 205 39 0 chr6 46008818 46008896 -136406346 - MIR SINE MIR -88 174 94 477 242 102 75 chr6 46009501 46009739 -136405503 + L2 LINE L2 2790 3022 -291 2238 124 3 3 chr6 46009739 46010038 -136405204 + AluSx SINE Alu 1 299 -13 477 242 102 75 chr6 46010038 46010096 -136405146 + L2 LINE L2 3022 3077 -236 1158 167 74 98 chr6 46010105 46010483 -136404759 + LTR34 LTR ERV1 2 370 -329 819 169 0 79 chr6 46010486 46010663 -136404579 + LTR34 LTR ERV1 533 695 -4 543 286 120 18 chr6 46010664 46010881 -136404361 + L2 LINE L2 3074 3312 -1 1709 194 97 3 chr6 46010942 46011302 -136403940 - MSTD LTR MaLR -2 394 1 1586 159 48 3 chr6 46011302 46011597 -136403645 - MSTD-int LTR MaLR 0 1735 1428 4178 241 13 38 chr6 46011632 46012165 -136403077 - MSTD-int LTR MaLR -636 1099 554 2211 119 7 0 chr6 46012165 46012467 -136402775 - AluSg SINE Alu -6 304 1 4178 241 13 38 chr6 46012467 46013057 -136402185 - MSTD-int LTR MaLR -1181 554 4 948 233 67 0 chr6 46013059 46013282 -136401960 - MSTD LTR MaLR -2 394 157 280 286 0 16 chr6 46013979 46014042 -136401200 - MER91 DNA MER1_type -78 62 1 186 297 31 16 chr6 46014056 46014120 -136401122 - MIR3 SINE MIR -21 187 123 2295 106 10 0 chr6 46014120 46014412 -136400830 + AluSq SINE Alu 2 296 -17 243 0 0 0 chr6 46014582 46014609 -136400633 + (A)n Simple_repeat Simple_repeat 1 27 0 331 303 23 45 chr6 46014609 46014741 -136400501 - MIR3 SINE MIR -73 135 7 1920 123 38 3 chr6 46014746 46015038 -136400204 - AluY SINE Alu -9 302 1 270 274 59 118 chr6 46015310 46015547 -136399695 + MIR SINE MIR 7 229 -33 222 216 81 14 chr6 46016282 46016356 -136398886 - MIR SINE MIR -7 255 177 1259 253 142 18 chr6 46016357 46016578 -136398664 + MLT1H1 LTR MaLR 1 193 -362 2091 128 0 0 chr6 46016578 46016882 -136398360 + AluSg SINE Alu 1 304 0 1259 253 142 18 chr6 46016882 46017110 -136398132 + MLT1H1 LTR MaLR 193 507 -48 731 250 18 6 chr6 46017127 46017291 -136397951 - MIR SINE MIR -84 178 13 181 284 80 23 chr6 46017227 46017315 -136397927 + MIR SINE MIR 12 104 -158 * 201 175 0 0 chr6 46017504 46017544 -136397698 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 279 93 0 0 chr6 46017822 46017865 -136397377 + (A)n Simple_repeat Simple_repeat 1 43 0 240 281 92 9 chr6 46019131 46019270 -136395972 + L2 LINE L2 2874 3018 -254 3919 176 32 43 chr6 46019323 46019946 -136395296 + LTR39 LTR ERV1 1 615 -168 2354 101 0 3 chr6 46019946 46020253 -136394989 + AluSc SINE Alu 1 306 -3 3919 176 32 43 chr6 46020253 46020421 -136394821 + LTR39 LTR ERV1 615 783 0 243 286 14 0 chr6 46020584 46020654 -136394588 + L2 LINE L2 3202 3272 0 245 306 41 48 chr6 46021378 46021672 -136393570 - MER5A DNA MER1_type -4 185 40 249 311 38 42 chr6 46021403 46021444 -136393798 + MER5A DNA MER1_type 29 69 -109 584 162 270 7 chr6 46021444 46021592 -136393650 - MER5A DNA MER1_type 0 189 3 249 311 38 42 chr6 46021592 46021691 -136393551 + MER5A DNA MER1_type 69 165 -13 285 359 60 12 chr6 46021698 46021865 -136393377 + MER5A DNA MER1_type 12 186 -3 284 328 63 45 chr6 46021876 46021988 -136393254 - MIR SINE MIR -58 150 36 1969 242 51 18 chr6 46022766 46023315 -136391927 - MLT1F1 LTR MaLR 0 567 1 309 337 20 0 chr6 46023357 46023455 -136391787 + L2 LINE L2 3205 3304 -9 432 318 45 40 chr6 46024034 46024235 -136391007 + MIR SINE MIR 1 202 -60 524 335 108 4 chr6 46024812 46025090 -136390152 + LTR16A1 LTR ERVL 147 453 -4 384 286 94 43 chr6 46025923 46026157 -136389085 + LTR33 LTR ERVL 41 286 -235 372 238 54 36 chr6 46026183 46026351 -136388891 + LTR33 LTR ERVL 343 513 -8 1160 191 104 86 chr6 46026591 46026858 -136388384 + MLT1B LTR MaLR 1 279 -111 3273 70 56 0 chr6 46026858 46027287 -136387955 + MLT2A2 LTR ERVL 1 453 0 1160 191 104 86 chr6 46027287 46027402 -136387840 + MLT1B LTR MaLR 279 390 0 503 339 0 0 chr6 46028640 46028820 -136386422 + (CA)n Simple_repeat Simple_repeat 1 180 0 322 304 146 18 chr6 46028981 46029152 -136386090 + MIR SINE MIR 60 252 -10 340 175 0 0 chr6 46029223 46029280 -136385962 + AluJo SINE Alu 1 57 -245 372 200 0 12 chr6 46029291 46029371 -136385871 + MLT1B LTR MaLR 307 385 -5 1471 135 4 30 chr6 46029371 46029608 -136385634 + AluJo SINE Alu 60 290 -22 430 288 24 16 chr6 46029611 46029736 -136385506 - MIR SINE MIR -62 146 21 752 264 78 0 chr6 46030326 46030519 -136384723 - MIR SINE MIR -10 252 45 1119 265 56 12 chr6 46030556 46030896 -136384346 - LTR16C LTR ERVL -32 459 105 264 271 125 10 chr6 46032003 46032099 -136383143 + MIR SINE MIR 121 227 -35 317 285 114 0 chr6 46032140 46032263 -136382979 + L2 LINE L2 3136 3272 0 405 316 73 11 chr6 46032343 46032520 -136382722 + L2 LINE L2 3117 3304 -9 227 306 0 0 chr6 46033760 46033809 -136381433 - L2 LINE L2 -87 3185 3137 340 281 91 16 chr6 46034144 46034265 -136380977 - MIR SINE MIR -114 148 19 429 296 40 40 chr6 46034324 46034550 -136380692 - LTR16C LTR ERVL -2 489 264 2675 102 8 6 chr6 46034816 46035179 -136380063 + THE1B LTR MaLR 1 364 0 10813 108 38 13 chr6 46035179 46036720 -136378522 + THE1B-int LTR MaLR 1 1580 0 2618 94 34 6 chr6 46036722 46037074 -136378168 + THE1B LTR MaLR 3 364 0 1665 228 22 49 chr6 46037389 46037880 -136377362 + MLT1J LTR MaLR 1 478 -33 469 297 55 7 chr6 46037881 46038026 -136377216 + L2 LINE L2 3121 3272 0 2535 75 0 28 chr6 46038070 46038389 -136376853 + AluY SINE Alu 1 310 -1 389 279 218 38 chr6 46038613 46038929 -136376313 + L2 LINE L2 2890 3262 -10 272 290 10 30 chr6 46039473 46039573 -136375669 - MIR3 SINE MIR -29 179 82 344 269 72 48 chr6 46039583 46039750 -136375492 - LTR16C LTR ERVL 0 491 321 250 221 26 26 chr6 46040281 46040358 -136374884 - MLT1J LTR MaLR -196 315 239 950 251 147 14 chr6 46041161 46041515 -136373727 - LTR16C LTR ERVL -2 489 89 418 218 83 23 chr6 46041649 46041805 -136373437 - MER20B DNA MER1_type -17 202 34 209 216 0 59 chr6 46042721 46042772 -136372470 - MIR SINE MIR -5 257 210 841 189 42 26 chr6 46042773 46042964 -136372278 - MER3 DNA MER1_type -2 207 14 651 316 37 41 chr6 46043062 46043139 -136372103 - MIR SINE MIR -30 232 156 1792 166 72 6 chr6 46043139 46043459 -136371783 - MER58B DNA MER1_type 0 341 1 651 316 37 41 chr6 46043459 46043599 -136371643 - MIR SINE MIR -106 156 16 1489 312 123 20 chr6 46043611 46044622 -136370620 - L2 LINE L2 -149 3164 2046 565 298 133 15 chr6 46044797 46045129 -136370113 - LTR33 LTR ERVL 0 521 151 264 288 96 0 chr6 46045130 46045255 -136369987 + L1MC4a LINE L1 5619 5755 -2053 402 229 101 0 chr6 46045328 46045437 -136369805 - MIR SINE MIR -19 243 124 262 281 142 20 chr6 46045442 46045695 -136369547 + L1MC4a LINE L1 5748 6031 -1777 322 329 42 25 chr6 46045844 46046017 -136369225 + MIR SINE MIR 32 205 -57 219 36 0 0 chr6 46046699 46046727 -136368515 + (TG)n Simple_repeat Simple_repeat 2 29 0 262 294 137 14 chr6 46046938 46047084 -136368158 - MIR SINE MIR -13 249 86 382 79 32 0 chr6 46048095 46048158 -136367084 + (ATG)n Simple_repeat Simple_repeat 1 65 0 850 230 185 4 chr6 46048172 46048437 -136366805 + L2 LINE L2 2996 3308 -5 182 267 67 0 chr6 46048423 46048468 -136366774 + MIR3 SINE MIR 132 179 -29 * 2489 151 57 2 chr6 46048583 46048987 -136366255 - MSTB LTR MaLR 0 426 1 350 279 90 8 chr6 46049166 46049288 -136365954 - MIR SINE MIR -34 228 97 411 236 62 50 chr6 46049385 46049546 -136365696 + MER103 DNA DNA 3 165 -1 418 271 56 0 chr6 46050029 46050136 -136365106 - MIR SINE MIR -58 204 92 1052 251 13 4 chr6 46050885 46051124 -136364118 - MIR SINE MIR -21 241 1 1695 231 148 7 chr6 46051338 46051763 -136363479 + MLT1G1 LTR MaLR 111 595 0 360 276 60 83 chr6 46052051 46052268 -136362974 - L1MEd LINE L1 -5095 1024 813 2586 174 19 39 chr6 46052276 46052793 -136362449 + MLT2B2 LTR ERVL 1 507 -8 612 300 17 11 chr6 46052847 46053027 -136362215 - L1MEd LINE L1 -5375 744 564 960 178 20 25 chr6 46053157 46053354 -136361888 + AluJo SINE Alu 106 301 -11 1044 246 148 43 chr6 46053897 46054372 -136360870 - MLT1H LTR MaLR 0 542 23 322 342 54 42 chr6 46055100 46055340 -136359902 - MLT1K LTR MaLR 0 588 346 413 251 91 30 chr6 46055836 46055906 -136359336 - MIR3 SINE MIR -32 230 166 1614 187 0 3 chr6 46055906 46056205 -136359037 - AluJb SINE Alu -14 298 1 413 251 91 30 chr6 46056205 46056342 -136358900 - MIR3 SINE MIR -96 166 12 927 234 11 6 chr6 46056351 46056588 -136358654 + L1ME3 LINE L1 5596 5828 -334 1575 161 0 4 chr6 46056588 46056842 -136358400 + AluSx SINE Alu 36 288 -24 1184 120 0 0 chr6 46056848 46057015 -136358227 + AluSp SINE Alu 142 308 -5 1343 247 34 0 chr6 46057016 46057344 -136357898 + L1ME3 LINE L1 5824 6162 0 367 326 0 0 chr6 46058013 46058102 -136357140 - MER91B DNA MER1_type -11 179 91 520 266 8 0 chr6 46058121 46058249 -136356993 - MER91B DNA MER1_type -61 129 1 1542 230 30 30 chr6 46058354 46058723 -136356519 + MLT1A2 LTR MaLR 6 374 0 804 146 47 73 chr6 46061837 46062029 -136353213 - MER5A DNA MER1_type -2 187 1 188 247 123 12 chr6 46062150 46062231 -136353011 + L2 LINE L2 3163 3252 -61 717 341 0 5 chr6 46062538 46062755 -136352487 - MIR SINE MIR -34 228 13 333 230 18 96 chr6 46063278 46063435 -136351807 + MER5A DNA MER1_type 36 189 0 568 247 107 26 chr6 46064253 46064524 -136350718 - LTR33A LTR ERVL -5 518 226 574 254 96 59 chr6 46065139 46065501 -136349741 + MLT1I LTR MaLR 1 367 -42 300 246 14 0 chr6 46065683 46065752 -136349490 + L2 LINE L2 3202 3271 -1 198 311 56 22 chr6 46066136 46066226 -136349016 + L3 LINE CR1 1075 1167 -410 311 297 11 33 chr6 46066857 46066948 -136348294 - MIR3 SINE MIR -10 198 110 256 306 65 71 chr6 46068236 46068559 -136346683 - L2 LINE L2 -36 3236 2916 295 282 97 20 chr6 46068802 46068952 -136346290 - MIR SINE MIR -63 145 13 308 287 75 53 chr6 46069039 46069304 -136345938 - L1ME4a LINE L1 -5 6116 5846 225 277 69 40 chr6 46069317 46069418 -136345824 - MIR SINE MIR -93 169 66 567 252 148 0 chr6 46069812 46069967 -136345275 + MER5A DNA MER1_type 4 181 -8 774 266 60 8 chr6 46070058 46070306 -136344936 - MIR SINE MIR 0 262 2 287 299 113 15 chr6 46070518 46070712 -136344530 - MIR SINE MIR -24 238 21 1495 277 38 34 chr6 46071488 46071986 -136343256 + MLT1J LTR MaLR 9 508 -3 304 337 5 7 chr6 46072167 46072293 -136342949 - MIR SINE MIR -48 160 36 610 278 111 6 chr6 46072625 46072787 -136342455 + MIR SINE MIR 13 191 -71 285 338 83 15 chr6 46072879 46073012 -136342230 + L2 LINE L2 3167 3308 -5 1838 237 48 15 chr6 46073199 46073610 -136341632 + L1M4 LINE L1 4321 4758 -1388 2339 110 27 32 chr6 46073610 46073983 -136341259 - THE1C LTR MaLR 0 375 5 1838 237 48 15 chr6 46073983 46074157 -136341085 + L1M4 LINE L1 4758 4925 -1221 320 184 66 0 chr6 46074161 46074237 -136341005 + L1M4 LINE L1 4761 4841 -1305 240 235 0 0 chr6 46074241 46074292 -136340950 - L1M4 LINE L1 -1181 4965 4915 252 172 115 11 chr6 46074294 46074365 -136340877 + L1M4 LINE L1 4936 5019 -1127 1600 156 0 7 chr6 46074365 46074634 -136340608 + AluSx SINE Alu 1 267 -45 252 172 115 11 chr6 46074634 46074649 -136340593 + L1M4 LINE L1 5019 5031 -1115 225 204 0 0 chr6 46074673 46074717 -136340525 + (TA)n Simple_repeat Simple_repeat 1 44 0 639 220 64 23 chr6 46074747 46074920 -136340322 + L1M4 LINE L1 5005 5184 -962 3385 191 88 23 chr6 46075010 46075261 -136339981 - L1MA9 LINE L1 -143 6169 5936 2205 146 19 21 chr6 46075261 46075637 -136339605 - THE1C LTR MaLR 0 375 1 3385 191 88 23 chr6 46075637 46076735 -136338507 - L1MA9 LINE L1 -376 5936 4727 3691 186 16 31 chr6 46076738 46076930 -136338312 - L1 LINE L1 -1686 4460 4267 371 164 0 13 chr6 46076930 46077005 -136338237 - Alu SINE Alu -258 50 1 3691 186 16 31 chr6 46077005 46077703 -136337539 - L1 LINE L1 -1879 4267 3550 311 279 136 26 chr6 46127805 46127959 -136287283 - MIR3 SINE MIR -22 186 16 233 270 0 16 chr6 46128235 46128298 -136286944 + CT-rich Low_complexity Low_complexity 4 65 0 1524 254 57 34 chr6 46128360 46128867 -136286375 + LTR33 LTR ERVL 1 519 -2 2300 120 3 0 chr6 46129816 46130125 -136285117 - AluSx SINE Alu -2 310 1 304 176 176 14 chr6 46130127 46130201 -136285041 + L2 LINE L2 2992 3077 -195 2228 124 0 0 chr6 46130610 46130909 -136284333 - AluSx SINE Alu -13 299 1 224 267 17 0 chr6 46132503 46132563 -136282679 + L2 LINE L2 2615 2675 -639 303 195 26 13 chr6 46132663 46132740 -136282502 + MIR SINE MIR 175 252 -10 420 138 50 12 chr6 46133076 46133156 -136282086 - ORSL DNA AcHobo -192 83 1 229 294 118 0 chr6 46134037 46134122 -136281120 + MIR SINE MIR 86 180 -82 180 0 0 0 chr6 46134389 46134409 -136280833 + (CAT)n Simple_repeat Simple_repeat 2 21 0 396 302 119 19 chr6 46134423 46134582 -136280660 - MIR SINE MIR -18 244 70 1051 146 52 0 chr6 46135877 46136090 -136279152 + L1MA7 LINE L1 6068 6291 0 1319 269 20 3 chr6 46136110 46136456 -136278786 + MLT1J LTR MaLR 56 407 -104 450 250 115 8 chr6 46136464 46136635 -136278607 - L1MD2 LINE L1 0 7808 6194 259 239 0 86 chr6 46136635 46136752 -136278490 + MLT1J LTR MaLR 403 509 -2 230 268 0 70 chr6 46137447 46137518 -136277724 - L2 LINE L2 -1 3271 3206 215 212 0 15 chr6 46139601 46139667 -136275575 + GA-rich Low_complexity Low_complexity 3 67 0 324 0 0 0 chr6 46140296 46140332 -136274910 + (CA)n Simple_repeat Simple_repeat 2 37 0 732 279 40 53 chr6 46140881 46141107 -136274135 + L1MC/D LINE L1 5385 5606 -2202 2017 120 120 15 chr6 46141107 46141449 -136273793 - MER83B LTR ERV1 0 378 1 732 279 40 53 chr6 46141449 46141599 -136273643 + L1MC/D LINE L1 5606 5756 -2052 1761 165 127 109 chr6 46142508 46143067 -136272175 + MLT1E1 LTR MaLR 86 654 0 332 301 48 19 chr6 46143394 46143552 -136271690 - MIR SINE MIR -62 146 35 546 292 169 44 chr6 46144030 46144447 -136270795 + L2 LINE L2 2666 3121 -192 182 189 378 0 chr6 46144549 46144623 -136270619 + L2 LINE L2 3171 3272 0 586 214 55 42 chr6 46144721 46144924 -136270318 + MIR SINE MIR 38 243 -19 976 201 11 11 chr6 46145008 46145197 -136270045 + MER5A DNA MER1_type 1 189 0 182 152 0 22 chr6 46145555 46145601 -136269641 + (CAGCC)n Simple_repeat Simple_repeat 1 45 0 988 246 114 0 chr6 46146853 46147133 -136268109 - LTR16C LTR ERVL 0 491 180 257 203 43 43 chr6 46147240 46147309 -136267933 + MLT1J LTR MaLR 354 422 -89 3519 120 64 7 chr6 46147313 46147890 -136267352 - MER4B LTR ERV1 0 610 1 303 239 99 0 chr6 46148000 46148071 -136267171 - MIR SINE MIR -82 180 103 243 268 70 0 chr6 46148270 46148341 -136266901 - MIR SINE MIR -152 110 35 271 293 179 43 chr6 46148442 46148582 -136266660 + MER5B DNA MER1_type 17 175 -3 398 335 0 39 chr6 46149514 46149669 -136265573 - MIR SINE MIR -52 210 62 538 254 123 81 chr6 46149745 46150104 -136265138 + MLT1J LTR MaLR 105 478 -33 237 303 37 64 chr6 46152372 46152481 -136262761 - L3 LINE CR1 -88 1489 1384 189 352 28 0 chr6 46152497 46152568 -136262674 - L2 LINE L2 -9 3263 3191 934 296 82 42 chr6 46152737 46153187 -136262055 - L3 LINE CR1 -282 1295 828 351 356 134 4 chr6 46153208 46153447 -136261795 - L3 LINE CR1 -865 712 443 319 357 127 31 chr6 46153673 46153964 -136261278 - L3 LINE CR1 -1218 359 41 589 250 158 20 chr6 46154062 46154258 -136260984 + MIR SINE MIR 40 262 0 357 269 30 57 chr6 46154646 46154805 -136260437 + MIR SINE MIR 2 160 -48 188 184 20 0 chr6 46155021 46155070 -136260172 + (CTA)n Simple_repeat Simple_repeat 1 50 0 260 280 56 48 chr6 46155078 46155203 -136260039 - MIR SINE MIR 0 262 137 592 266 95 16 chr6 46155522 46155924 -136259318 + L1ME4a LINE L1 5344 5803 -318 410 181 76 9 chr6 46156046 46156151 -136259091 + L1ME4a LINE L1 6007 6118 -3 515 229 23 8 chr6 46156458 46156589 -136258653 - Charlie4 DNA MER1_type 0 1961 1829 209 333 74 0 chr6 46156774 46156855 -136258387 - MIR SINE MIR -75 187 101 380 305 81 30 chr6 46156928 46157164 -136258078 + MLT1K LTR MaLR 274 521 -67 371 266 195 8 chr6 46157251 46157379 -136257863 - MIR SINE MIR -96 166 15 646 300 75 35 chr6 46158588 46158815 -136256427 - MIR SINE MIR 0 262 27 368 265 68 20 chr6 46158887 46159034 -136256208 - MIR SINE MIR -78 184 31 719 261 29 55 chr6 46160145 46160452 -136254790 + L2 LINE L2 3015 3313 0 314 314 52 29 chr6 46160456 46160628 -136254614 - MIR3 SINE MIR -27 181 6 243 322 62 55 chr6 46160988 46161134 -136254108 - MIR SINE MIR 0 262 116 872 280 92 13 chr6 46161157 46161616 -136253626 - L2 LINE L2 -49 3264 2774 371 350 126 10 chr6 46162496 46162702 -136252540 - MIR SINE MIR -13 249 20 212 338 50 0 chr6 46162829 46162909 -136252333 - MIR SINE MIR -87 121 38 442 313 9 0 chr6 46163469 46163581 -136251661 - MIR SINE MIR -97 165 53 247 275 50 83 chr6 46163680 46163800 -136251442 - MIR SINE MIR -73 189 74 840 198 204 57 chr6 46163975 46164293 -136250949 + MLT1A1 LTR MaLR 1 365 0 655 212 201 0 chr6 46164360 46164544 -136250698 - MIR SINE MIR -34 228 8 1502 156 37 0 chr6 46164862 46165131 -136250111 - L1MB3 LINE L1 -2 6181 5903 516 194 41 0 chr6 46165161 46165259 -136249983 - U6 snRNA snRNA -4 103 2 439 308 27 27 chr6 46165634 46165819 -136249423 - MIR SINE MIR -74 188 4 342 319 203 27 chr6 46166013 46166605 -136248637 + L3 LINE CR1 876 1571 -6 548 317 125 0 chr6 46166829 46167037 -136248205 - MIR SINE MIR -7 255 22 940 243 11 56 chr6 46167587 46167855 -136247387 - MIR SINE MIR -5 257 2 957 197 34 29 chr6 46168489 46168697 -136246545 + MER3 DNA MER1_type 1 209 0 1265 235 76 74 chr6 46168711 46169399 -136245843 - L2 LINE L2 -1 3312 2646 331 167 137 10 chr6 46169948 46170050 -136245192 - MER117 DNA MER1_type -74 123 9 524 229 151 22 chr6 46170054 46170233 -136245009 + L2 LINE L2 2811 3012 -301 220 226 65 16 chr6 46170287 46170349 -136244893 + MIR SINE MIR 58 122 -86 852 273 24 24 chr6 46170387 46170636 -136244606 + MIR SINE MIR 14 262 0 653 210 168 14 chr6 46170746 46170960 -136244282 + MIR SINE MIR 3 249 -13 399 291 113 50 chr6 46171518 46171916 -136243326 - MLT1J2 LTR MaLR -2 448 26 222 319 7 21 chr6 46172191 46172335 -136242907 + (CA)n Simple_repeat Simple_repeat 1 142 0 2366 124 0 0 chr6 46172398 46172704 -136242538 + AluSx SINE Alu 1 306 -6 282 344 44 0 chr6 46172853 46172943 -136242299 - L2 LINE L2 -15 3257 3164 665 217 78 165 chr6 46173318 46173382 -136241860 - LTR33A LTR ERVL 0 523 455 2090 127 3 10 chr6 46173382 46173696 -136241546 + AluSx SINE Alu 1 312 0 665 217 78 165 chr6 46173696 46174194 -136241048 - LTR33A LTR ERVL -68 455 10 442 302 108 0 chr6 46174579 46174801 -136240441 + LTR33 LTR ERVL 10 255 -266 793 189 44 19 chr6 46174819 46175025 -136240217 + MER20 DNA MER1_type 9 219 0 472 291 295 4 chr6 46175033 46175284 -136239958 - MER5C DNA MER1_type 0 324 1 195 359 119 24 chr6 46175634 46175885 -136239357 - L2 LINE L2 -578 2736 2462 384 160 210 8 chr6 46176140 46176259 -136238983 + MIR SINE MIR 120 262 0 537 80 0 0 chr6 46176356 46176431 -136238811 + (CA)n Simple_repeat Simple_repeat 2 76 0 920 238 27 27 chr6 46176764 46177025 -136238217 + MIR SINE MIR 2 262 0 469 282 176 0 chr6 46177281 46177469 -136237773 + MIR SINE MIR 14 234 -28 835 156 39 7 chr6 46177936 46178090 -136237152 - MSTA LTR MaLR -269 159 1 510 233 14 14 chr6 46178091 46178237 -136237005 + L1MB7 LINE L1 6020 6165 -19 335 272 89 52 chr6 46179769 46179960 -136235282 + MIR SINE MIR 22 219 -43 185 281 73 49 chr6 46181812 46181894 -136233348 - MIR SINE MIR -62 200 117 517 283 33 50 chr6 46182312 46182492 -136232750 + MIR SINE MIR 59 235 -27 180 328 66 49 chr6 46183563 46183685 -136231557 + MIR3 SINE MIR 33 156 -52 308 211 42 63 chr6 46185300 46185395 -136229847 + L3 LINE CR1 1478 1570 -7 237 302 0 0 chr6 46185814 46185877 -136229365 + MIR SINE MIR 82 144 -64 297 321 28 9 chr6 46186089 46186198 -136229044 + L2 LINE L2 3156 3266 -6 846 235 39 15 chr6 46186361 46186571 -136228671 + MIR SINE MIR 48 262 0 727 231 16 11 chr6 46189043 46189233 -136226009 + MIR SINE MIR 65 256 -6 403 238 0 33 chr6 46189275 46189377 -136225865 + MER33 DNA MER1_type 1 92 -97 1065 191 49 0 chr6 46189377 46189644 -136225598 + MER33 DNA MER1_type 45 324 0 228 284 30 0 chr6 46190506 46190573 -136224669 + GA-rich Low_complexity Low_complexity 2 70 0 228 277 32 21 chr6 46190717 46190811 -136224431 + GA-rich Low_complexity Low_complexity 4 98 0 319 331 109 22 chr6 46191389 46191573 -136223669 + MIR3 SINE MIR 3 202 -6 401 282 55 50 chr6 46191719 46191900 -136223342 - MIR3 SINE MIR -23 185 4 381 264 34 14 chr6 46193761 46193909 -136221333 + (CAGAGA)n Simple_repeat Simple_repeat 5 155 0 211 279 7 64 chr6 46194203 46194343 -136220899 + GA-rich Low_complexity Low_complexity 6 137 0 2418 101 26 63 chr6 46195433 46195811 -136219431 + THE1B LTR MaLR 1 364 0 290 241 46 46 chr6 46195941 46196028 -136219214 - MIR SINE MIR -82 180 94 675 209 26 81 chr6 46197528 46197762 -136217480 + L2 LINE L2 3080 3300 -13 444 37 0 0 chr6 46197762 46197816 -136217426 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 541 280 74 26 chr6 46198226 46198497 -136216745 + L2 LINE L2 3003 3286 -27 2120 128 7 3 chr6 46198736 46199041 -136216201 - AluSx SINE Alu -6 306 1 375 23 0 0 chr6 46199275 46199319 -136215923 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 390 21 0 0 chr6 46199318 46199365 -136215877 + (GA)n Simple_repeat Simple_repeat 2 48 0 212 59 78 0 chr6 46199367 46199418 -136215824 + (TA)n Simple_repeat Simple_repeat 2 56 0 264 30 0 0 chr6 46199419 46199452 -136215790 + (GA)n Simple_repeat Simple_repeat 2 34 0 1594 165 26 22 chr6 46199453 46199725 -136215517 - AluJo SINE Alu -39 273 1 2128 90 0 0 chr6 46199794 46200062 -136215180 - AluY SINE Alu -2 309 42 1236 170 105 10 chr6 46200234 46200528 -136214714 - MER33 DNA MER1_type 0 324 3 1004 242 5 0 chr6 46200532 46200743 -136214499 + MER58A DNA MER1_type 13 224 0 183 80 0 0 chr6 46201261 46201286 -136213956 + (TG)n Simple_repeat Simple_repeat 1 25 0 429 168 21 11 chr6 46201458 46201553 -136213689 + LTR33 LTR ERVL 1 96 -425 329 331 47 0 chr6 46202728 46202855 -136212387 - MIR SINE MIR -108 154 22 233 372 36 7 chr6 46204599 46204736 -136210506 + L2 LINE L2 3118 3258 -14 342 67 0 0 chr6 46204742 46204787 -136210455 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 1152 291 12 24 chr6 46204873 46205210 -136210032 + LTR16C LTR ERVL 149 481 -10 966 173 0 6 chr6 46207340 46207496 -136207746 + AluJb SINE Alu 147 301 -11 290 207 170 67 chr6 46207577 46207712 -136207530 + MLT1I LTR MaLR 1 149 -260 232 211 155 0 chr6 46207896 46207967 -136207275 + MLT1I LTR MaLR 326 407 -2 444 279 70 47 chr6 46208479 46208847 -136206395 + MLT1J LTR MaLR 76 511 0 354 322 175 11 chr6 46209661 46209844 -136205398 - MIR SINE MIR -48 214 2 1978 146 3 13 chr6 46210961 46211276 -136203966 + AluJo SINE Alu 1 312 0 342 224 86 37 chr6 46211315 46211549 -136203693 - L2 LINE L2 -1 3312 3108 224 274 308 0 chr6 46212506 46212623 -136202619 - MIR SINE MIR -50 212 60 1301 230 182 5 chr6 46212694 46213090 -136202152 + MLT1J LTR MaLR 46 511 0 218 376 66 20 chr6 46213127 46213324 -136201918 + L2 LINE L2 2555 2760 -554 1876 113 0 4 chr6 46213501 46213749 -136201493 - AluJb SINE Alu 0 312 66 353 333 84 56 chr6 46213755 46214112 -136201130 + L2 LINE L2 2906 3272 0 969 187 27 5 chr6 46214128 46214454 -136200788 + MSTD LTR MaLR 1 396 0 1084 292 54 22 chr6 46214546 46214715 -136200527 + LTR16C LTR ERVL 110 272 -219 1855 212 38 38 chr6 46214715 46215220 -136200022 + MLT1D LTR MaLR 1 505 0 1084 292 54 22 chr6 46215220 46215420 -136199822 + LTR16C LTR ERVL 272 491 0 224 262 66 0 chr6 46216516 46216577 -136198665 + MIR SINE MIR 85 149 -113 1623 194 39 16 chr6 46216593 46216974 -136198268 + MLT1B LTR MaLR 1 390 0 360 0 0 0 chr6 46217003 46217043 -136198199 + (ATG)n Simple_repeat Simple_repeat 1 40 0 202 283 142 26 chr6 46218555 46218668 -136196574 + MIR SINE MIR 20 145 -63 1327 236 62 46 chr6 46218768 46219221 -136196021 + MLT1C LTR MaLR 1 460 -7 418 248 40 10 chr6 46219410 46219511 -136195731 + LTR33 LTR ERVL 89 192 -329 2387 99 0 0 chr6 46220164 46220457 -136194785 + AluSc SINE Alu 1 293 -16 407 340 41 46 chr6 46220814 46221231 -136194011 + L3 LINE CR1 1080 1494 -83 356 344 41 5 chr6 46221322 46221517 -136193725 + MIR SINE MIR 4 205 -57 216 323 65 11 chr6 46223181 46223274 -136191968 + MIR SINE MIR 31 128 -134 467 237 145 68 chr6 46223323 46223409 -136191833 - MIR SINE MIR -38 224 146 1885 75 4 0 chr6 46223409 46223663 -136191579 - L1PA8 LINE L1 -7 6165 5911 467 237 145 68 chr6 46223663 46223783 -136191459 - MIR SINE MIR -116 146 2 1173 249 78 18 chr6 46223977 46224309 -136190933 - MLT1C LTR MaLR 0 467 107 2180 119 0 3 chr6 46224309 46224625 -136190617 - AluSx SINE Alu 0 312 1 1173 249 78 18 chr6 46224625 46224678 -136190564 - MLT1C LTR MaLR -360 107 59 347 298 30 0 chr6 46225625 46225759 -136189483 - MIR3 SINE MIR -53 155 34 332 171 49 12 chr6 46225790 46225872 -136189370 + ORSL DNA AcHobo 35 119 -156 215 290 80 30 chr6 46226397 46226497 -136188745 + L2 LINE L2 2966 3070 -202 488 296 40 34 chr6 46226883 46227059 -136188183 + MER5B DNA MER1_type 1 177 -1 316 279 12 0 chr6 46227262 46227348 -136187894 - MIR SINE MIR -75 133 47 280 254 15 0 chr6 46228072 46228139 -136187103 - MIR SINE MIR -64 198 131 709 222 97 6 chr6 46228194 46228370 -136186872 - MIR SINE MIR -4 258 67 221 326 11 22 chr6 46228447 46228539 -136186703 - MIR SINE MIR -145 117 27 215 291 0 18 chr6 46228578 46228633 -136186609 + (TG)n Simple_repeat Simple_repeat 1 54 0 459 291 161 9 chr6 46228827 46229050 -136186192 + MIR SINE MIR 4 260 -2 376 224 90 134 chr6 46229187 46229388 -136185854 + MIR3 SINE MIR 8 199 -9 535 266 107 74 chr6 46229886 46230101 -136185141 - MIR SINE MIR -1 261 36 1690 195 7 7 chr6 46230101 46230409 -136184833 - AluJb SINE Alu 0 312 5 535 266 107 74 chr6 46230409 46230437 -136184805 - MIR SINE MIR -226 36 10 439 301 52 39 chr6 46230453 46230682 -136184560 + MIR SINE MIR 31 262 0 2050 139 9 22 chr6 46230989 46231305 -136183937 + AluSx SINE Alu 1 312 0 575 219 67 45 chr6 46231746 46231924 -136183318 - MIR SINE MIR -43 219 38 459 209 78 8 chr6 46232910 46233039 -136182203 + MIR SINE MIR 66 203 -59 443 316 0 0 chr6 46233369 46233508 -136181734 - MIR SINE MIR -12 250 112 1234 223 67 80 chr6 46235627 46236089 -136179153 - LTR16C LTR ERVL -1 490 35 252 296 157 9 chr6 46236811 46236919 -136178323 - MIR3 SINE MIR -70 138 15 772 261 155 15 chr6 46236993 46237334 -136177908 + L2 LINE L2 2037 2425 -889 221 182 91 0 chr6 46238473 46238528 -136176714 + L2 LINE L2 3000 3059 -213 377 301 85 11 chr6 46239131 46239307 -136175935 - MIR3 SINE MIR -9 199 11 585 241 32 46 chr6 46240794 46241010 -136174232 - L2 LINE L2 -383 2931 2719 279 284 35 35 chr6 46241877 46241993 -136173249 + MIR3 SINE MIR 74 189 -19 306 271 123 67 chr6 46242693 46242977 -136172265 - L2 LINE L2 -70 3243 2944 264 213 185 19 chr6 46244000 46244108 -136171134 + MIR3 SINE MIR 35 160 -48 2434 302 172 38 chr6 46244346 46246710 -136168532 + L2 LINE L2 612 3293 -20 296 279 12 23 chr6 46248521 46248607 -136166635 - L2 LINE L2 -38 3275 3191 364 343 0 0 chr6 46248693 46248798 -136166444 - L2 LINE L2 0 3272 3168 574 240 78 26 chr6 46249635 46249789 -136165453 + MIR SINE MIR 32 193 -69 287 229 264 28 chr6 46250031 46250175 -136165067 + LTR33 LTR ERVL 1 178 -343 401 254 37 37 chr6 46250221 46250355 -136164887 + LTR33 LTR ERVL 326 459 -62 840 300 64 33 chr6 46250387 46250841 -136164401 + L1ME4a LINE L1 5653 6120 -1 542 227 75 139 chr6 46250858 46251164 -136164078 + L1ME4a LINE L1 5805 6090 -31 1654 169 30 34 chr6 46251164 46251460 -136163782 - AluJo SINE Alu -17 295 1 542 227 75 139 chr6 46251460 46251484 -136163758 + L1ME4a LINE L1 6090 6114 -7 367 314 33 0 chr6 46251945 46252066 -136163176 - MIR SINE MIR -45 217 93 233 250 97 57 chr6 46252568 46252692 -136162550 - L2 LINE L2 -23 3290 3162 568 341 176 10 chr6 46253302 46253889 -136161353 - L2 LINE L2 -921 2393 1710 468 211 70 49 chr6 46254072 46254257 -136160985 + MIR SINE MIR 59 247 -15 316 291 29 10 chr6 46256630 46256733 -136158509 + MIR SINE MIR 41 145 -63 410 323 154 0 chr6 46257180 46257400 -136157842 - MIR SINE MIR -2 260 7 272 289 215 0 chr6 46257420 46257555 -136157687 + MIR SINE MIR 91 254 -8 194 277 50 30 chr6 46257809 46257859 -136157383 - MIR SINE MIR -117 145 94 216 303 28 18 chr6 46257859 46257968 -136157274 + MIR SINE MIR 2 111 -151 710 318 31 0 chr6 46258365 46258588 -136156654 + MIR SINE MIR 23 252 -10 301 360 24 0 chr6 46258673 46258798 -136156444 + MIR3 SINE MIR 53 180 -28 299 320 39 0 chr6 46259208 46259311 -136155931 - MER112 DNA MER1_type -6 254 148 337 370 42 9 chr6 46260360 46260576 -136154666 - L2 LINE L2 -4 3309 3087 561 284 87 20 chr6 46261016 46261117 -136154125 - MIR SINE MIR -6 256 163 555 234 90 12 chr6 46261117 46261284 -136153958 - MER104 DNA MER2_type 0 180 1 561 284 87 20 chr6 46261284 46261422 -136153820 - MIR SINE MIR -99 163 6 629 228 60 0 chr6 46262141 46262308 -136152934 + MER104 DNA MER2_type 1 177 -3 2198 127 0 3 chr6 46263073 46263372 -136151870 - AluSx SINE Alu -14 298 1 594 260 95 97 chr6 46263372 46263826 -136151416 - L2 LINE L2 -6 3307 2855 2318 130 0 0 chr6 46264145 46264453 -136150789 - AluSx SINE Alu -4 308 1 1232 246 94 36 chr6 46265298 46265445 -136149797 + LTR16C LTR ERVL 52 189 -302 2412 84 0 13 chr6 46265445 46265756 -136149486 + AluSx SINE Alu 1 307 -5 1232 246 94 36 chr6 46265756 46266022 -136149220 + LTR16C LTR ERVL 189 489 -2 192 279 63 13 chr6 46266619 46266698 -136148544 + MIR SINE MIR 59 141 -67 484 254 0 25 chr6 46266754 46266876 -136148366 - L2 LINE L2 -1 3312 3194 561 279 7 0 chr6 46267872 46268008 -136147234 + MIR3 SINE MIR 26 162 -46 259 188 59 82 chr6 46268009 46268094 -136147148 - MIR SINE MIR 0 262 180 685 290 21 5 chr6 46268140 46268333 -136146909 - MIR SINE MIR -59 203 8 246 239 174 43 chr6 46268539 46268631 -136146611 - L2 LINE L2 0 3313 3210 183 350 36 29 chr6 46268667 46268807 -136146435 - L2 LINE L2 -228 3044 2904 368 264 22 11 chr6 46268976 46269067 -136146175 + L2 LINE L2 3222 3313 0 201 294 106 0 chr6 46269094 46269179 -136146063 - MIR SINE MIR -68 140 47 687 268 56 48 chr6 46269179 46269565 -136145677 + MLT1H LTR MaLR 22 549 0 180 295 0 16 chr6 46269640 46269701 -136145541 - L2 LINE L2 -221 3051 2992 294 238 0 0 chr6 46269702 46269765 -136145477 - L2 LINE L2 -2 3270 3208 223 287 245 29 chr6 46269764 46270083 -136145159 - L2 LINE L2 -276 2996 2614 * 241 283 10 40 chr6 46270944 46271043 -136144199 + GA-rich Low_complexity Low_complexity 4 99 0 225 229 180 0 chr6 46273003 46273064 -136142178 + MIR SINE MIR 181 252 -10 210 245 20 0 chr6 46273030 46273079 -136142163 + L2 LINE L2 3223 3272 0 * 270 0 0 0 chr6 46273344 46273374 -136141868 + (T)n Simple_repeat Simple_repeat 1 30 0 202 333 109 24 chr6 46273425 46273590 -136141652 - MIR SINE MIR 0 262 84 183 173 0 0 chr6 46274247 46274299 -136140943 + (CA)n Simple_repeat Simple_repeat 2 53 0 572 275 21 25 chr6 46274755 46274958 -136140284 + MIR3 SINE MIR 2 205 -3 309 359 8 8 chr6 46275900 46276017 -136139225 - MIR SINE MIR -29 233 117 266 369 14 14 chr6 46276618 46276759 -136138483 - MIR SINE MIR -102 160 20 206 398 10 10 chr6 46277249 46277347 -136137895 - MIR SINE MIR -145 117 20 581 288 88 12 chr6 46277729 46277969 -136137273 - MIR SINE MIR 0 262 5 294 149 0 90 chr6 46278474 46278541 -136136701 + Tigger5 DNA MER2_type 2257 2317 -6 429 169 13 0 chr6 46278543 46278620 -136136622 - Tigger5 DNA MER2_type -2244 79 2 726 304 9 0 chr6 46279511 46279728 -136135514 + MIR SINE MIR 44 262 0 275 305 51 42 chr6 46280080 46280198 -136135044 + L3 LINE CR1 795 913 -664 278 349 74 35 chr6 46280360 46280795 -136134447 + L2 LINE L2 2015 2466 -848 1067 288 103 14 chr6 46280827 46281417 -136133825 - L1ME3A LINE L1 -8 6154 5513 512 264 81 28 chr6 46282243 46282433 -136132809 - MIR SINE MIR -60 202 3 238 330 39 90 chr6 46282447 46282680 -136132562 + L2 LINE L2 2992 3212 -60 372 165 0 0 chr6 46282965 46283056 -136132186 + CT-rich Low_complexity Low_complexity 2 92 0 360 0 0 0 chr6 46283213 46283253 -136131989 + (CA)n Simple_repeat Simple_repeat 2 41 0 261 119 0 0 chr6 46283255 46283297 -136131945 + (GA)n Simple_repeat Simple_repeat 1 42 0 644 253 122 27 chr6 46283764 46283985 -136131257 - MIR SINE MIR -8 254 13 269 304 143 0 chr6 46283998 46284110 -136131132 + MIR3 SINE MIR 35 162 -46 481 318 20 0 chr6 46284362 46284513 -136130729 + MIR SINE MIR 79 232 -30 367 279 153 54 chr6 46284667 46284889 -136130353 - MIR SINE MIR -12 250 7 811 278 14 0 chr6 46286730 46286939 -136128303 - MIR SINE MIR -12 250 39 257 241 0 0 chr6 46286942 46286996 -136128246 - L3 LINE CR1 -98 1479 1426 288 238 16 0 chr6 46287092 46287155 -136128087 + L2 LINE L2 3247 3310 -3 446 247 154 0 chr6 46288660 46288822 -136126420 + MER96B DNA MER1_type? 230 416 -1 521 219 42 0 chr6 46289322 46289441 -136125801 - L2 LINE L2 0 3313 3190 253 264 27 73 chr6 46289646 46289756 -136125486 + MIR SINE MIR 46 150 -112 435 301 151 14 chr6 46289911 46290130 -136125112 + MIR SINE MIR 13 261 -1 214 265 145 0 chr6 46290138 46290221 -136125021 + MIR3 SINE MIR 90 184 -24 210 328 168 0 chr6 46294397 46294516 -136120726 - MIR3 SINE MIR -1 207 69 243 352 19 9 chr6 46294635 46294740 -136120502 + MIR3 SINE MIR 56 161 -47 682 276 108 4 chr6 46294794 46295026 -136120216 + MIR SINE MIR 3 258 -4 399 235 25 43 chr6 46295425 46295587 -136119655 + GA-rich Low_complexity Low_complexity 6 164 0 359 215 50 91 chr6 46295700 46295821 -136119421 + L2 LINE L2 3192 3307 -6 191 260 110 14 chr6 46296429 46296502 -136118740 + MIR SINE MIR 27 106 -102 578 312 99 0 chr6 46296523 46296744 -136118498 - MIR SINE MIR -14 248 6 341 267 35 17 chr6 46296745 46296861 -136118381 + MIR SINE MIR 104 221 -41 2443 100 0 0 chr6 46296944 46297243 -136117999 - AluSq SINE Alu -14 299 1 1341 276 85 8 chr6 46297348 46297830 -136117412 + LTR33 LTR ERVL 1 519 -2 253 176 144 157 chr6 46297881 46297996 -136117246 + MIR SINE MIR 40 154 -108 2329 114 0 3 chr6 46297996 46298303 -136116939 + AluSx SINE Alu 1 306 -6 253 176 144 157 chr6 46298303 46298340 -136116902 + MIR SINE MIR 154 190 -72 375 332 38 60 chr6 46298473 46298708 -136116534 + MLT1K LTR MaLR 169 398 -190 535 273 19 25 chr6 46298973 46299134 -136116108 + MER91B DNA MER1_type 23 182 -8 2176 114 19 7 chr6 46299595 46299902 -136115340 + AluSx SINE Alu 2 312 0 304 286 22 11 chr6 46300933 46301024 -136114218 + MLT1K LTR MaLR 167 258 -330 325 340 0 10 chr6 46301046 46301149 -136114093 - L2 LINE L2 -19 3294 3193 336 208 10 42 chr6 46301275 46301371 -136113871 + MLT1K LTR MaLR 470 562 -26 21 0 0 0 chr6 46301643 46301664 -136113578 + AT_rich Low_complexity Low_complexity 1 21 0 324 237 7 82 chr6 46301689 46301824 -136113418 - MIR3 SINE MIR -2 206 82 666 190 153 6 chr6 46301937 46302100 -136113142 + MER5A DNA MER1_type 3 189 0 665 206 161 0 chr6 46302108 46302263 -136112979 - MER5A DNA MER1_type 0 189 10 227 161 18 0 chr6 46304232 46304288 -136110954 + (TGGA)n Simple_repeat Simple_repeat 3 59 0 22 56 0 0 chr6 46304775 46304811 -136110431 + AT_rich Low_complexity Low_complexity 1 36 0 261 242 42 32 chr6 46306431 46306526 -136108716 - MIR SINE MIR -94 114 19 375 23 0 0 chr6 46306555 46306599 -136108643 + (CA)n Simple_repeat Simple_repeat 2 45 0 527 265 68 0 chr6 46307573 46307705 -136107537 + MIR SINE MIR 96 236 -26 593 276 87 0 chr6 46308546 46308731 -136106511 - MIR SINE MIR -16 246 46 209 390 0 0 chr6 46309944 46310021 -136105221 + L2 LINE L2 3191 3267 -5 472 259 15 89 chr6 46310454 46310724 -136104518 - MER112 DNA MER1_type -2 254 5 338 265 143 41 chr6 46311136 46311283 -136103959 - MIR3 SINE MIR -12 196 35 240 240 0 0 chr6 46311815 46311865 -136103377 + L2 LINE L2 3262 3311 -2 229 186 0 51 chr6 46312271 46312330 -136102912 + GA-rich Low_complexity Low_complexity 4 59 0 321 47 0 0 chr6 46312666 46312709 -136102533 + (CA)n Simple_repeat Simple_repeat 1 43 0 586 281 63 24 chr6 46313782 46314031 -136101211 - MIR SINE MIR -3 259 1 318 252 50 67 chr6 46314134 46314253 -136100989 - L2 LINE L2 -3 3310 3194 588 318 69 45 chr6 46314256 46314634 -136100608 + L2 LINE L2 2422 2808 -506 7863 27 2 0 chr6 46315001 46316734 -136098508 + L1PA4 LINE L1 4419 6153 -2 266 284 0 20 chr6 46316888 46316990 -136098252 - MIR SINE MIR -115 147 48 450 0 0 0 chr6 46318523 46318573 -136096669 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 1379 68 6 0 chr6 46318573 46318735 -136096507 - AluSp SINE Alu -26 287 125 317 276 0 13 chr6 46318740 46318816 -136096426 - MIR SINE MIR -107 155 81 208 331 44 44 chr6 46319546 46319794 -136095448 + L2 LINE L2 2632 2879 -435 460 208 208 0 chr6 46319852 46319996 -136095246 + MER5B DNA MER1_type 3 176 -2 1148 224 16 8 chr6 46320114 46320374 -136094868 - MIR SINE MIR 0 262 3 355 306 97 0 chr6 46320541 46320665 -136094577 - L2 LINE L2 -240 3032 2897 400 309 94 13 chr6 46320966 46321115 -136094127 + L2 LINE L2 3112 3272 0 225 298 32 11 chr6 46321617 46321711 -136093531 - MIR SINE MIR -93 115 20 691 268 14 43 chr6 46321940 46322149 -136093093 + MIR SINE MIR 49 251 -11 221 235 67 67 chr6 46322202 46322321 -136092921 + MIR SINE MIR 98 216 -46 379 280 28 0 chr6 46322956 46323063 -136092179 + MIR SINE MIR 54 163 -99 463 271 94 6 chr6 46323146 46323316 -136091926 + MIR SINE MIR 8 192 -70 339 277 62 67 chr6 46323390 46323473 -136091769 + MIR SINE MIR 13 95 -167 443 187 0 149 chr6 46323473 46323534 -136091708 - MER81 DNA DNA 0 114 79 1990 100 67 0 chr6 46323534 46323826 -136091416 + AluSq SINE Alu 1 310 0 443 187 0 149 chr6 46323826 46323895 -136091347 - MER81 DNA DNA -35 79 1 339 277 62 67 chr6 46323895 46324006 -136091236 + MIR SINE MIR 95 206 -56 785 268 64 4 chr6 46324016 46324251 -136090991 - MIR SINE MIR -7 255 7 617 252 49 64 chr6 46325588 46325854 -136089388 + MIR SINE MIR 1 262 0 238 263 0 13 chr6 46326150 46326226 -136089016 + GA-rich Low_complexity Low_complexity 1 75 0 330 26 0 0 chr6 46326917 46326956 -136088286 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2078 117 3 3 chr6 46326958 46327240 -136088002 - AluSx SINE Alu -30 282 1 2395 18 0 0 chr6 46327301 46327582 -136087660 - L1PA2 LINE L1 -30 6125 5845 343 0 0 0 chr6 46327582 46327622 -136087620 + L1PA2 LINE L1 6106 6152 -3 233 17 69 69 chr6 46327625 46327683 -136087559 + A-rich Low_complexity Low_complexity 2 59 0 201 250 19 0 chr6 46327874 46327926 -136087316 - MIR SINE MIR -70 192 140 277 238 40 89 chr6 46328284 46328385 -136086857 + MIR SINE MIR 112 207 -55 913 245 34 0 chr6 46328519 46328723 -136086519 - MIR SINE MIR -2 260 50 185 300 114 0 chr6 46328816 46328886 -136086356 + L2 LINE L2 3122 3199 -73 284 143 18 0 chr6 46329326 46329382 -136085860 + (CAT)n Simple_repeat Simple_repeat 3 59 0 309 68 0 0 chr6 46329432 46329476 -136085766 + (CA)n Simple_repeat Simple_repeat 2 45 0 228 336 75 0 chr6 46329606 46329713 -136085529 + L2 LINE L2 3153 3267 -5 540 318 6 0 chr6 46330704 46330883 -136084359 + (TG)n Simple_repeat Simple_repeat 1 180 0 212 265 144 50 chr6 46331131 46331312 -136083930 - MIR3 SINE MIR -1 207 10 220 167 42 0 chr6 46332762 46332808 -136082434 - MER5A DNA MER1_type -137 52 4 352 193 39 33 chr6 46332906 46333038 -136082204 + MER106B DNA MER1_type 2 141 -95 332 198 83 0 chr6 46333041 46333148 -136082094 + MER106A DNA MER1_type 108 199 -37 200 269 259 9 chr6 46334122 46334230 -136081012 - MIR SINE MIR -82 180 46 318 148 0 0 chr6 46335661 46335715 -136079527 + (CA)n Simple_repeat Simple_repeat 2 55 0 348 24 0 0 chr6 46337332 46337373 -136077869 + (CA)n Simple_repeat Simple_repeat 1 41 0 343 222 129 0 chr6 46338098 46338211 -136077031 - MIR SINE MIR -55 207 65 237 357 0 42 chr6 46338813 46338956 -136076286 + G-rich Low_complexity Low_complexity 1 137 0 602 286 6 0 chr6 46339839 46340014 -136075228 - L1ME LINE L1 -364 5757 5582 182 287 0 58 chr6 46340328 46340415 -136074827 + L2 LINE L2 3227 3308 -5 275 264 117 46 chr6 46340466 46340663 -136074579 + L3b LINE CR1 1205 1415 -168 2124 125 0 0 chr6 46341383 46341686 -136073556 - AluSx SINE Alu 0 305 3 410 305 42 26 chr6 46341823 46342013 -136073229 - MIR SINE MIR -50 212 20 327 284 172 8 chr6 46342182 46342316 -136072926 + MIR3 SINE MIR 17 172 -36 659 296 44 0 chr6 46342583 46342786 -136072456 - MIR SINE MIR -28 234 23 583 301 67 4 chr6 46343561 46343800 -136071442 + MIR SINE MIR 9 262 0 203 314 111 20 chr6 46344444 46344597 -136070645 - MIR SINE MIR -2 260 94 580 284 45 37 chr6 46345184 46345536 -136069706 - L2 LINE L2 -1356 1958 1604 454 293 54 29 chr6 46346386 46346625 -136068617 + LTR33A LTR ERVL 265 509 -14 469 288 92 12 chr6 46347308 46347471 -136067771 + MIR SINE MIR 84 259 -3 700 290 111 17 chr6 46347481 46347778 -136067464 - LTR16C LTR ERVL -5 486 162 357 317 24 30 chr6 46349715 46349882 -136065360 + MIR3 SINE MIR 35 200 -8 409 235 45 38 chr6 46349915 46350047 -136065195 - MER5A DNA MER1_type 0 189 57 246 311 22 61 chr6 46349917 46350097 -136065145 + MER5A DNA MER1_type 17 189 0 * 2003 133 32 35 chr6 46351590 46351966 -136063276 + THE1C LTR MaLR 1 375 0 290 275 66 0 chr6 46352399 46352490 -136062752 - MIR SINE MIR -72 190 94 827 304 94 18 chr6 46352713 46353055 -136062187 + LTR16C LTR ERVL 3 370 -121 2201 161 45 10 chr6 46353057 46353454 -136061788 - MSTC LTR MaLR -17 411 1 656 192 0 0 chr6 46353459 46353579 -136061663 + LTR16C LTR ERVL 372 491 0 306 297 148 8 chr6 46353587 46353715 -136061527 - MIR3 SINE MIR -33 175 30 233 306 10 51 chr6 46354199 46354297 -136060945 - MIR3 SINE MIR -22 186 93 255 271 0 0 chr6 46356721 46356780 -136058462 + CT-rich Low_complexity Low_complexity 2 60 0 376 280 8 40 chr6 46357290 46357415 -136057827 - MIR3 SINE MIR -3 205 85 291 93 0 0 chr6 46357699 46357742 -136057500 + (TG)n Simple_repeat Simple_repeat 1 43 0 331 319 101 18 chr6 46357876 46358045 -136057197 + MIR3 SINE MIR 25 207 -1 22 0 0 0 chr6 46358104 46358126 -136057116 + AT_rich Low_complexity Low_complexity 1 22 0 225 296 34 55 chr6 46358472 46358532 -136056710 - MIR SINE MIR -3 259 199 1503 199 10 3 chr6 46358532 46358824 -136056418 - AluJb SINE Alu -18 294 1 225 296 34 55 chr6 46358824 46358952 -136056290 - MIR SINE MIR -63 199 12 335 352 103 48 chr6 46358985 46359343 -136055899 - L2 LINE L2 -2 3270 2893 226 351 0 36 chr6 46359760 46359925 -136055317 + C-rich Low_complexity Low_complexity 2 160 0 205 308 0 0 chr6 46360426 46360478 -136054764 - L2 LINE L2 -82 3190 3139 2121 109 7 0 chr6 46360939 46361232 -136054010 - AluSx SINE Alu -17 295 1 218 233 0 0 chr6 46361243 46361286 -136053956 - L2 LINE L2 -20 3252 3210 549 150 33 83 chr6 46362329 46362449 -136052793 + MER81 DNA DNA 1 114 0 235 0 0 54 chr6 46362995 46363032 -136052210 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 374 323 36 55 chr6 46363883 46364103 -136051139 - L1MC4 LINE L1 -1 8041 7826 3618 223 84 21 chr6 46364161 46366113 -136049129 - L1ME2 LINE L1 -23 6141 4063 628 180 94 144 chr6 46366118 46366374 -136048868 + LTR40a LTR ERVL 6 248 -271 1056 206 13 46 chr6 46366386 46366567 -136048675 - MLT1A2 LTR MaLR -144 230 57 2167 132 48 28 chr6 46366567 46366924 -136048318 - THE1B LTR MaLR 0 364 1 1056 206 13 46 chr6 46366924 46366980 -136048262 - MLT1A2 LTR MaLR -317 57 1 2648 237 73 46 chr6 46366995 46367944 -136047298 - L1ME2 LINE L1 -2567 3579 2606 819 264 139 51 chr6 46368490 46368959 -136046283 + MLT1J LTR MaLR 1 510 -1 364 187 80 0 chr6 46368961 46369036 -136046206 - MER117 DNA MER1_type -113 84 4 293 299 60 34 chr6 46369065 46369182 -136046060 + L2 LINE L2 3153 3272 0 1040 217 134 16 chr6 46369373 46369626 -136045616 + MLT1C LTR MaLR 185 467 0 614 268 27 33 chr6 46369749 46369932 -136045310 + MIR SINE MIR 80 261 -1 342 0 0 0 chr6 46371434 46371472 -136043770 + (CA)n Simple_repeat Simple_repeat 2 39 0 249 83 0 0 chr6 46371522 46371558 -136043684 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 69 0 0 chr6 46371602 46371631 -136043611 + (CA)n Simple_repeat Simple_repeat 2 30 0 406 191 0 0 chr6 46371703 46371766 -136043476 - MER5B DNA MER1_type -5 173 111 2687 243 54 16 chr6 46371777 46372577 -136042665 + L1ME3A LINE L1 5341 6170 0 400 282 40 24 chr6 46372577 46372701 -136042541 - MER5B DNA MER1_type -48 130 5 369 304 51 65 chr6 46372722 46372939 -136042303 + MIR SINE MIR 34 247 -15 353 318 80 0 chr6 46373713 46373864 -136041378 + MIR3 SINE MIR 30 192 -16 276 278 185 0 chr6 46375949 46376057 -136039185 - MLT1L LTR MaLR 0 615 488 * 363 242 0 22 chr6 46376050 46376141 -136039101 - MLT1H1 LTR MaLR -444 111 23 301 179 0 131 chr6 46376160 46376244 -136038998 + MLT1H LTR MaLR 477 549 0 182 295 123 57 chr6 46376881 46377003 -136038239 - L2 LINE L2 -7 3265 3136 450 267 30 0 chr6 46377056 46377157 -136038085 - L2 LINE L2 -10 3303 3200 738 291 105 0 chr6 46377346 46377631 -136037611 + LTR16C LTR ERVL 139 453 -38 1705 87 95 0 chr6 46377636 46377877 -136037365 + AluSc SINE Alu 1 264 -45 365 333 22 0 chr6 46377953 46378088 -136037154 - MIR SINE MIR -17 245 108 239 292 22 34 chr6 46378131 46378220 -136037022 + MIR SINE MIR 52 139 -69 796 181 52 7 chr6 46379416 46379571 -136035671 - MIR SINE MIR -61 201 40 365 241 37 86 chr6 46379718 46379880 -136035362 + L2 LINE L2 3159 3312 -1 429 110 0 0 chr6 46379979 46380052 -136035190 + (TG)n Simple_repeat Simple_repeat 2 74 0 465 234 63 91 chr6 46480662 46480837 -135934405 - L1M4c LINE L1 -4946 1438 1269 1640 229 51 27 chr6 46480847 46481398 -135933844 + L1ME1 LINE L1 1308 1871 -4669 * 2325 174 58 72 chr6 46481386 46482080 -135933162 + L1MB8 LINE L1 5316 5999 -179 1594 226 20 57 chr6 46482082 46482574 -135932668 + MLT1D LTR MaLR 1 474 -31 712 195 61 0 chr6 46482583 46482747 -135932495 + L1MB8 LINE L1 6005 6178 0 315 214 92 0 chr6 46482741 46482839 -135932403 + L1ME1 LINE L1 5447 5553 -987 * 508 242 123 24 chr6 46482864 46483075 -135932167 + L1ME1 LINE L1 6321 6552 -8 268 331 16 8 chr6 46483151 46483272 -135931970 - L1ME LINE L1 -507 5614 5493 261 119 0 0 chr6 46483642 46483684 -135931558 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 1027 246 74 10 chr6 46483916 46484225 -135931017 + MER93a LTR ERV1 74 402 0 214 238 0 48 chr6 46484616 46484679 -135930563 + GA-rich Low_complexity Low_complexity 3 62 0 192 163 0 0 chr6 46484687 46484730 -135930512 + (TG)n Simple_repeat Simple_repeat 1 43 0 264 251 54 143 chr6 46486574 46486777 -135928465 - MIR SINE MIR -77 185 1 2353 82 0 0 chr6 46487354 46487669 -135927573 + AluY SINE Alu 2 316 0 181 319 0 21 chr6 46487707 46487754 -135927488 + L2 LINE L2 3142 3187 -85 244 265 0 0 chr6 46487818 46487867 -135927375 + L2 LINE L2 3138 3186 -86 353 262 8 74 chr6 46488556 46488678 -135926564 - MIR SINE MIR -109 153 40 1100 280 115 53 chr6 46488693 46489738 -135925504 - L2 LINE L2 0 3313 2208 955 189 53 33 chr6 46489738 46489982 -135925260 + L1MB8 LINE L1 5929 6177 -1 226 327 93 9 chr6 46490006 46490113 -135925129 - L2 LINE L2 -1141 2173 2058 277 263 7 39 chr6 46492254 46492564 -135922678 + G-rich Low_complexity Low_complexity 1 299 0 494 280 216 26 chr6 46492915 46493258 -135921984 - LTR16C LTR ERVL -83 408 1 477 0 0 0 chr6 46495292 46495345 -135919897 + (CA)n Simple_repeat Simple_repeat 2 54 0 360 0 0 0 chr6 46495623 46495663 -135919579 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 360 274 67 15 chr6 46495890 46496025 -135919217 + MIR SINE MIR 68 209 -53 363 219 62 21 chr6 46496238 46496297 -135918945 + MIR3 SINE MIR 84 150 -58 4043 95 16 33 chr6 46496297 46496876 -135918366 + MER61E LTR ERV1 1 569 0 363 219 62 21 chr6 46496876 46496912 -135918330 + MIR3 SINE MIR 150 183 -25 4519 105 9 3 chr6 46496926 46497557 -135917685 + MER41B LTR ERV1 1 635 0 630 207 78 32 chr6 46498695 46498799 -135916443 + LTR16A LTR ERVL 224 322 -128 4391 118 7 41 chr6 46498799 46499486 -135915756 + MER4A LTR ERV1 1 664 0 630 207 78 32 chr6 46499486 46499598 -135915644 + LTR16A LTR ERVL 322 450 0 202 200 0 25 chr6 46499788 46499828 -135915414 + C-rich Low_complexity Low_complexity 3 41 0 233 291 25 25 chr6 46500586 46500665 -135914577 + MIR SINE MIR 163 241 -21 2674 60 3 0 chr6 46501782 46502115 -135913127 - L1PA5 LINE L1 0 6154 5821 259 177 113 0 chr6 46502125 46502186 -135913056 - MIR SINE MIR -63 145 87 239 218 0 0 chr6 46502910 46502965 -135912277 + (TG)n Simple_repeat Simple_repeat 1 55 0 301 306 27 36 chr6 46503854 46503965 -135911277 - L3 LINE CR1 -2 1575 1466 702 251 43 0 chr6 46503966 46504129 -135911113 - MER5A DNA MER1_type 0 189 20 348 327 58 26 chr6 46505068 46505224 -135910018 - L3 LINE CR1 -2 1575 1415 2059 115 21 0 chr6 46505975 46506263 -135908979 - AluSx SINE Alu -18 294 1 247 296 14 0 chr6 46506293 46506364 -135908878 - L2 LINE L2 -8 3264 3193 185 149 0 106 chr6 46506359 46506406 -135908836 - L2 LINE L2 -4 3309 3268 * 496 241 202 25 chr6 46506372 46506575 -135908667 - MIR SINE MIR -6 256 18 480 18 0 0 chr6 46506579 46506636 -135908606 + (TG)n Simple_repeat Simple_repeat 2 58 0 902 273 69 38 chr6 46507311 46507728 -135907514 + L1MC4a LINE L1 4674 5118 -1028 1799 165 0 0 chr6 46507728 46507994 -135907248 + AluSx SINE Alu 4 269 -43 902 273 69 38 chr6 46507994 46508202 -135907040 + L1MC4a LINE L1 5118 5318 -828 29 28 0 0 chr6 46508343 46508379 -135906863 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr6 46508379 46508404 -135906838 + (CA)n Simple_repeat Simple_repeat 2 26 0 1268 232 147 15 chr6 46509439 46509835 -135905407 - MLT1J2 LTR MaLR 0 450 3 203 229 0 0 chr6 46510090 46510125 -135905117 + (CG)n Simple_repeat Simple_repeat 2 36 0 330 314 60 16 chr6 46510722 46510904 -135904338 + L1MC4a LINE L1 5693 5882 -449 180 77 0 0 chr6 46510925 46510951 -135904291 + (TG)n Simple_repeat Simple_repeat 1 26 0 276 250 23 34 chr6 46510958 46511046 -135904196 + L1ME4a LINE L1 5946 6032 -89 572 243 69 42 chr6 46511067 46511256 -135903986 + MIR SINE MIR 7 200 -62 341 149 0 45 chr6 46511333 46511400 -135903842 + MIR SINE MIR 192 255 -7 2213 179 31 3 chr6 46511534 46511926 -135903316 + MER57A LTR ERV1 1 403 0 1912 88 25 67 chr6 46512039 46512322 -135902920 + AluSg SINE Alu 29 299 -11 2088 54 0 4 chr6 46512829 46513105 -135902137 - L1PA5 LINE L1 -751 5395 5121 6187 44 0 17 chr6 46513105 46513186 -135902056 + L1PA5 LINE L1 5411 5492 -662 2350 65 41 0 chr6 46513186 46513307 -135901935 + AluY SINE Alu 2 117 -194 189 0 0 0 chr6 46513307 46513328 -135901914 + (CA)n Simple_repeat Simple_repeat 2 22 0 2350 65 41 0 chr6 46513328 46513498 -135901744 + AluY SINE Alu 117 305 -6 6187 44 0 17 chr6 46513498 46514171 -135901071 + L1PA5 LINE L1 5492 6153 -1 1422 252 39 77 chr6 46514180 46514803 -135900439 + LTR9 LTR ERV1 14 612 0 239 211 193 0 chr6 46515178 46515235 -135900007 + L2 LINE L2 3246 3313 0 984 264 117 22 chr6 46515319 46515773 -135899469 - LTR33 LTR ERVL -24 497 1 1491 183 0 8 chr6 46515899 46516140 -135899102 + AluJb SINE Alu 1 239 -73 356 287 11 0 chr6 46516142 46516229 -135899013 + MER21B LTR ERV1 307 394 -469 2171 210 137 75 chr6 46516229 46516289 -135898953 + L1MC5 LINE L1 6837 6892 -1069 1842 172 0 23 chr6 46516289 46516591 -135898651 + AluJb SINE Alu 1 295 -17 2171 210 137 75 chr6 46516591 46517215 -135898027 + L1MC5 LINE L1 6892 7607 -354 2252 90 3 13 chr6 46517215 46517525 -135897717 + AluSx SINE Alu 5 311 -1 2171 210 137 75 chr6 46517525 46517865 -135897377 + L1MC5 LINE L1 7607 7925 -36 252 0 0 0 chr6 46518109 46518137 -135897105 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 403 290 23 8 chr6 46518171 46518302 -135896940 - MIR SINE MIR -127 135 3 3281 222 67 44 chr6 46519978 46520746 -135894496 + L1ME1 LINE L1 4382 5131 -1035 2511 83 0 6 chr6 46520746 46521059 -135894183 + AluSq SINE Alu 1 311 -2 3281 222 67 44 chr6 46521059 46522029 -135893213 + L1ME1 LINE L1 5131 6161 -5 195 250 33 54 chr6 46522145 46522237 -135893005 + L2 LINE L2 3183 3272 0 203 204 61 0 chr6 46522880 46522929 -135892313 - MIR SINE MIR -208 54 3 202 330 0 43 chr6 46524653 46524747 -135890495 - MIR SINE MIR -87 121 32 239 184 0 0 chr6 46524790 46524839 -135890403 + L2 LINE L2 3193 3241 -72 610 249 160 0 chr6 46525385 46525554 -135889688 + MER91A DNA MER1_type 1 196 0 288 208 8 29 chr6 46525735 46525830 -135889412 + MIR SINE MIR 92 150 -58 189 271 21 0 chr6 46526466 46526514 -135888728 - MIR SINE MIR -63 145 97 347 242 63 0 chr6 46527196 46527291 -135887951 - MIR SINE MIR -70 138 38 305 293 68 41 chr6 46528468 46528615 -135886627 - MIR3 SINE MIR -51 157 7 709 286 53 56 chr6 46528617 46528994 -135886248 - L2 LINE L2 0 3313 2938 418 303 22 79 chr6 46529748 46529939 -135885303 + MIR SINE MIR 24 191 -71 2013 131 13 29 chr6 46529939 46530251 -135884991 + AluSx SINE Alu 1 307 -5 418 303 22 79 chr6 46530251 46530314 -135884928 + MIR SINE MIR 191 256 -6 544 139 119 10 chr6 46530551 46530652 -135884590 - MER81 DNA DNA 0 114 3 411 307 39 8 chr6 46530953 46531080 -135884162 - LTR40a LTR ERVL -157 362 232 279 0 0 0 chr6 46531108 46531139 -135884103 + (GA)n Simple_repeat Simple_repeat 2 32 0 241 226 122 96 chr6 46531211 46531326 -135883916 - LTR40a LTR ERVL -401 118 1 1055 211 60 53 chr6 46531326 46531744 -135883498 + HAL1 LINE L1 992 1412 -1095 21 0 0 0 chr6 46533417 46533438 -135881804 + AT_rich Low_complexity Low_complexity 1 21 0 2137 129 7 0 chr6 46533629 46533924 -135881318 - AluSx SINE Alu -15 297 1 241 255 69 29 chr6 46536985 46537087 -135878155 - MIR3 SINE MIR -6 202 97 1711 116 56 0 chr6 46537992 46538259 -135876983 - MER2 DNA MER2_type -59 286 5 263 254 0 0 chr6 46538816 46538875 -135876367 + L1M4 LINE L1 2958 3016 -3130 571 236 84 22 chr6 46539057 46539235 -135876007 + L1ME1 LINE L1 5973 6161 -5 764 119 6 94 chr6 46539361 46539409 -135875833 + L1MB7 LINE L1 17 68 -6474 2453 101 0 0 chr6 46539409 46539715 -135875527 + AluSx SINE Alu 1 306 -6 764 119 6 94 chr6 46539715 46539825 -135875417 + L1MB7 LINE L1 68 161 -6381 13368 193 26 29 chr6 46539891 46544023 -135871219 + L1MB7 LINE L1 2563 6641 -41 224 194 299 0 chr6 46544340 46544407 -135870835 - MIR SINE MIR 0 262 176 511 281 7 0 chr6 46544503 46544638 -135870604 - MIR SINE MIR -124 138 3 323 260 60 7 chr6 46544654 46544804 -135870438 + GA-rich Low_complexity Low_complexity 3 160 0 450 279 78 0 chr6 46544961 46545115 -135870127 + MIR SINE MIR 23 188 -74 204 328 126 17 chr6 46546156 46546275 -135868967 + L3b LINE CR1 1357 1488 -95 3328 231 73 27 chr6 46549574 46550818 -135864424 + L2 LINE L2 1956 3313 0 237 319 14 0 chr6 46550883 46550952 -135864290 - Charlie4 DNA MER1_type 0 1961 1892 494 333 134 16 chr6 46552705 46553213 -135862029 + L1ME4a LINE L1 5327 5894 -227 196 283 166 28 chr6 46554586 46554731 -135860511 - MIR SINE MIR -61 201 37 2192 121 0 0 chr6 46555187 46555477 -135859765 + AluSx SINE Alu 2 291 -21 14559 25 1 1 chr6 46555501 46557989 -135857253 + L1PA2 LINE L1 3702 6193 0 3056 33 3 19 chr6 46557989 46558411 -135856831 + L1PA3 LINE L1 5770 6185 0 2340 113 0 0 chr6 46558417 46558726 -135856516 + AluSg SINE Alu 2 310 0 269 301 84 12 chr6 46559638 46559721 -135855521 - MER91C DNA MER1_type -30 110 22 222 37 0 0 chr6 46559832 46559859 -135855383 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2294 110 0 7 chr6 46559868 46560178 -135855064 - AluY SINE Alu -3 308 1 266 329 168 0 chr6 46560524 46560679 -135854563 + L3 LINE CR1 1310 1490 -87 497 340 75 39 chr6 46560721 46561003 -135854239 + L2 LINE L2 2976 3267 -5 476 262 27 75 chr6 46561022 46561147 -135854095 - MIR SINE MIR 0 262 147 2067 133 0 0 chr6 46561147 46561441 -135853801 - AluSx SINE Alu -18 294 1 476 262 27 75 chr6 46561441 46561502 -135853740 - MIR SINE MIR -115 147 85 192 182 0 0 chr6 46561516 46561549 -135853693 + L3 LINE CR1 1532 1564 -13 2523 4 0 4 chr6 46562279 46562555 -135852687 - AluYa5 SINE Alu -12 299 25 289 148 93 0 chr6 46563101 46563155 -135852087 + FLAM SINE Alu 66 124 -9 524 240 190 14 chr6 46564161 46564382 -135850860 - MIR SINE MIR -1 261 2 21 57 0 0 chr6 46565233 46565268 -135849974 + AT_rich Low_complexity Low_complexity 1 35 0 373 315 66 13 chr6 46566732 46566885 -135848357 - MIR SINE MIR -60 202 42 1866 179 0 26 chr6 46569456 46569769 -135845473 - AluJb SINE Alu -7 305 1 2427 78 3 0 chr6 46569799 46570095 -135845147 + AluY SINE Alu 1 297 -14 286 352 70 31 chr6 46570135 46570263 -135844979 - MIR3 SINE MIR -73 135 3 240 328 157 17 chr6 46570657 46570892 -135844350 - L2 LINE L2 -188 3084 2817 2334 97 10 6 chr6 46571231 46571542 -135843700 + AluSx SINE Alu 1 312 0 352 367 73 22 chr6 46571667 46571983 -135843259 + L2 LINE L2 2941 3272 0 622 247 6 0 chr6 46572557 46572719 -135842523 + MER103 DNA DNA 2 164 -2 237 256 139 35 chr6 46572873 46572959 -135842283 + MIR3 SINE MIR 108 202 -6 2765 82 20 10 chr6 46573153 46573554 -135841688 + MLT2A1 LTR ERVL 1 405 -39 219 80 80 0 chr6 46573554 46573604 -135841638 + (TA)n Simple_repeat Simple_repeat 1 54 0 344 36 18 18 chr6 46573605 46573660 -135841582 + MLT2A1 LTR ERVL 398 452 -1 321 229 29 0 chr6 46573799 46573869 -135841373 + MIR3 SINE MIR 126 197 -11 252 281 164 39 chr6 46573941 46574069 -135841173 + MIR3 SINE MIR 3 146 -62 1498 183 98 0 chr6 46574071 46574345 -135840897 + AluJo SINE Alu 3 303 -9 2315 72 34 3 chr6 46575469 46575761 -135839481 - AluY SINE Alu -10 301 1 2476 70 0 16 chr6 46576110 46576426 -135838816 + AluY SINE Alu 1 311 0 216 0 0 0 chr6 46577362 46577386 -135837856 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 531 0 0 0 chr6 46577385 46577444 -135837798 + (GA)n Simple_repeat Simple_repeat 2 60 0 2248 99 0 39 chr6 46578377 46578689 -135836553 + AluSx SINE Alu 1 300 -12 389 211 11 0 chr6 46578781 46578871 -135836371 + L1ME1 LINE L1 6007 6097 -69 26 30 0 0 chr6 46579118 46579151 -135836091 + AT_rich Low_complexity Low_complexity 1 33 0 833 227 95 126 chr6 46579262 46579323 -135835919 - L1MC4a LINE L1 -1793 6015 5954 2358 75 0 22 chr6 46579323 46579641 -135835601 + AluY SINE Alu 1 311 0 833 227 95 126 chr6 46579641 46580358 -135834884 - L1MC4a LINE L1 -1854 5954 5261 227 206 59 0 chr6 46580366 46580434 -135834808 - L1MC4a LINE L1 -894 5252 5181 249 329 53 0 chr6 46581187 46581263 -135833979 + L2 LINE L2 3142 3221 -51 1450 272 134 67 chr6 46581585 46582630 -135832612 + L2 LINE L2 1472 2588 -726 575 284 16 0 chr6 46582630 46582757 -135832485 - MER5B DNA MER1_type 0 178 50 613 204 7 36 chr6 46582767 46582904 -135832338 + FLAM_A SINE Alu 10 142 0 207 156 156 0 chr6 46582908 46582953 -135832289 - MER5B DNA MER1_type -126 52 1 * 1059 304 77 27 chr6 46582953 46583634 -135831608 + L2 LINE L2 2578 3300 -13 190 354 0 0 chr6 46583897 46583962 -135831280 + L2 LINE L2 3208 3272 0 21 57 0 0 chr6 46584051 46584086 -135831156 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr6 46586544 46586574 -135828668 + AT_rich Low_complexity Low_complexity 1 30 0 180 152 0 0 chr6 46588113 46588146 -135827096 + CT-rich Low_complexity Low_complexity 1 33 0 524 311 17 44 chr6 46589561 46589741 -135825501 - MIR3 SINE MIR -22 186 12 313 314 116 23 chr6 46589936 46590108 -135825134 - MIR SINE MIR 0 262 75 260 285 134 29 chr6 46590672 46590783 -135824459 - L2 LINE L2 -67 3246 3109 1573 179 8 0 chr6 46590783 46591034 -135824208 + AluJb SINE Alu 1 253 -59 260 285 134 29 chr6 46591034 46591094 -135824148 - L2 LINE L2 -204 3109 3057 678 287 46 43 chr6 46591191 46591564 -135823678 - L2 LINE L2 -416 2898 2525 1166 141 57 6 chr6 46591671 46591848 -135823394 - AluJb SINE Alu -126 186 1 21 0 0 0 chr6 46592339 46592360 -135822882 + AT_rich Low_complexity Low_complexity 1 21 0 771 189 26 20 chr6 46592484 46592637 -135822605 - FRAM SINE Alu -23 153 1 268 242 0 16 chr6 46592641 46592703 -135822539 + MLT1J2 LTR MaLR 72 132 -318 2306 106 0 0 chr6 46592743 46593046 -135822196 + AluSx SINE Alu 1 303 -9 311 277 163 30 chr6 46593075 46593241 -135822001 + MLT1J LTR MaLR 275 462 -49 23 0 0 0 chr6 46594117 46594140 -135821102 + AT_rich Low_complexity Low_complexity 1 23 0 685 198 0 0 chr6 46594151 46594267 -135820975 - FLAM_A SINE Alu -16 117 2 319 268 255 0 chr6 46594274 46594431 -135820811 - HAL1 LINE L1 -142 2365 2169 279 136 0 198 chr6 46594582 46594663 -135820579 + L2 LINE L2 3230 3294 -19 24 0 0 29 chr6 46596377 46596393 -135818849 + AT_rich Low_complexity Low_complexity 1 16 -18 2153 71 28 18 chr6 46596393 46596676 -135818566 - AluSc SINE Alu -23 286 1 24 0 0 29 chr6 46596676 46596694 -135818548 + AT_rich Low_complexity Low_complexity 16 34 0 2419 83 7 0 chr6 46597230 46597530 -135817712 + AluSx SINE Alu 1 302 -10 1783 163 17 13 chr6 46597633 46597934 -135817308 + AluSg SINE Alu 1 302 -8 685 239 23 17 chr6 46597957 46598068 -135817174 + MLT1E LTR MaLR 413 527 -66 2349 68 3 16 chr6 46598068 46598376 -135816866 - AluY SINE Alu -7 304 1 685 239 23 17 chr6 46598376 46598440 -135816802 + MLT1E LTR MaLR 527 589 -4 323 290 173 25 chr6 46599353 46599515 -135815727 - L1M4 LINE L1 -769 5377 5192 415 305 80 16 chr6 46600167 46600354 -135814888 - MIR3 SINE MIR -7 201 3 351 259 100 59 chr6 46601122 46601462 -135813780 - L1ME LINE L1 -303 5818 5465 2091 116 10 3 chr6 46601541 46601833 -135813409 - AluSx SINE Alu -18 294 1 213 121 0 0 chr6 46603563 46603596 -135811646 + (CCA)n Simple_repeat Simple_repeat 3 35 0 2516 50 0 3 chr6 46605007 46605306 -135809936 - AluY SINE Alu -13 298 1 716 183 0 8 chr6 46606226 46606346 -135808896 - FLAM_A SINE Alu -14 119 1 316 340 55 35 chr6 46608307 46608507 -135806735 + L1MC4 LINE L1 7839 8042 0 23 54 0 0 chr6 46608551 46608588 -135806654 + AT_rich Low_complexity Low_complexity 1 37 0 748 211 26 65 chr6 46609020 46609302 -135805940 + L1ME1 LINE L1 5905 6333 -1 738 230 13 54 chr6 46610096 46610257 -135804985 + MER112 DNA MER1_type 1 150 -110 831 143 0 23 chr6 46610257 46610390 -135804852 - FLAM_C SINE Alu -2 131 2 738 230 13 54 chr6 46610390 46610467 -135804775 + MER112 DNA MER1_type 150 229 -31 209 182 0 0 chr6 46610580 46610613 -135804629 - MIR SINE MIR -27 235 203 843 214 13 0 chr6 46611168 46611327 -135803915 + FRAM SINE Alu 4 164 -2 22 0 0 0 chr6 46612943 46612965 -135802277 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr6 46613269 46613300 -135801942 + GC_rich Low_complexity Low_complexity 1 31 0 186 133 0 0 chr6 46613506 46613536 -135801706 + (CCG)n Simple_repeat Simple_repeat 2 31 0 378 304 9 0 chr6 46616556 46616668 -135798574 + MER117 DNA MER1_type 2 114 -83 198 350 52 21 chr6 46619931 46620028 -135795214 + MIR SINE MIR 150 249 -13 1811 159 0 24 chr6 46620095 46620384 -135794858 + AluJb SINE Alu 16 297 -15 239 176 98 0 chr6 46621074 46621125 -135794117 - Tigger5 DNA MER2_type 0 2323 2268 439 203 0 0 chr6 46621141 46621220 -135794022 - Tigger5 DNA MER2_type -2244 79 1 198 0 0 0 chr6 46622957 46622979 -135792263 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr6 46625335 46625357 -135789885 + (A)n Simple_repeat Simple_repeat 1 22 0 653 284 26 7 chr6 46625496 46625651 -135789591 + MER5B DNA MER1_type 7 164 -14 354 23 0 0 chr6 46628071 46628114 -135787128 + (TG)n Simple_repeat Simple_repeat 1 43 0 237 33 0 0 chr6 46628205 46628235 -135787007 + (TG)n Simple_repeat Simple_repeat 1 30 0 333 0 0 0 chr6 46628325 46628362 -135786880 + (TG)n Simple_repeat Simple_repeat 1 37 0 448 241 128 0 chr6 46629752 46629885 -135785357 - L2 LINE L2 0 3313 3164 328 244 171 16 chr6 46629943 46630066 -135785176 + MIR SINE MIR 32 173 -89 1830 168 3 23 chr6 46630095 46630399 -135784843 + AluJb SINE Alu 3 300 -12 681 280 101 0 chr6 46630528 46630717 -135784525 + MER63A DNA MER1_type 1 208 -2 429 298 90 17 chr6 46631344 46631522 -135783720 + MIR SINE MIR 68 258 -4 235 286 133 0 chr6 46631924 46632022 -135783220 - MIR3 SINE MIR -7 201 91 206 270 74 53 chr6 46633870 46634085 -135781157 - MIR SINE MIR 0 262 6 1230 273 90 25 chr6 46634104 46634677 -135780565 - L2 LINE L2 -1 3312 2712 565 132 85 0 chr6 46635118 46635224 -135780018 - MER94 DNA DNA -19 115 1 2162 103 20 0 chr6 46635249 46635541 -135779701 - AluSc SINE Alu -11 298 1 229 374 12 0 chr6 46635717 46635800 -135779442 - L2 LINE L2 0 3272 3189 429 340 25 13 chr6 46635823 46635982 -135779260 - MIR SINE MIR -21 241 81 451 272 52 29 chr6 46636263 46636399 -135778843 + MIR3 SINE MIR 30 168 -40 419 274 67 24 chr6 46636902 46637066 -135778176 - MIR SINE MIR -89 173 3 806 253 21 0 chr6 46637089 46637279 -135777963 - MIR SINE MIR -6 256 63 271 244 98 12 chr6 46640046 46640128 -135775114 - MIR3 SINE MIR -107 101 13 285 350 10 10 chr6 46640141 46640241 -135775001 - MIR SINE MIR -161 101 2 202 231 115 0 chr6 46640356 46640408 -135774834 - MER5B DNA MER1_type -7 171 114 266 296 56 37 chr6 46640513 46640621 -135774621 - L2 LINE L2 -1 3271 3162 256 292 22 37 chr6 46640852 46640985 -135774257 - MER5B DNA MER1_type -8 181 41 305 216 276 30 chr6 46640999 46641133 -135774109 + MER5B DNA MER1_type 11 177 -1 2163 108 11 3 chr6 46641609 46641896 -135773346 - AluSg SINE Alu -21 289 1 2389 90 3 0 chr6 46644520 46644820 -135770422 - AluSq SINE Alu -12 301 1 188 302 48 32 chr6 46645507 46645570 -135769672 + L3 LINE CR1 1375 1438 -139 472 321 98 23 chr6 46646206 46646421 -135768821 - MIR SINE MIR -12 250 20 443 241 86 0 chr6 46646437 46646553 -135768689 - L2 LINE L2 0 3313 3188 244 244 24 24 chr6 46646715 46646797 -135768445 + MIR3 SINE MIR 95 176 -32 * 562 230 178 7 chr6 46646781 46646933 -135768309 + MER5A DNA MER1_type 6 183 -6 545 257 36 7 chr6 46648506 46648646 -135766596 + MIR SINE MIR 119 262 0 226 250 0 21 chr6 46649246 46649294 -135765948 + L2 LINE L2 3219 3265 -7 302 236 112 108 chr6 46649975 46650127 -135765115 - L1ME4a LINE L1 -11 6110 5955 1269 180 102 3 chr6 46650127 46650422 -135764820 + MER33 DNA MER1_type 1 324 0 302 236 112 108 chr6 46650422 46650527 -135764715 - L1ME4a LINE L1 -166 5955 5852 2557 162 13 9 chr6 46650642 46651092 -135764150 + MER66A LTR ERV1 27 478 0 202 338 25 12 chr6 46651099 46651179 -135764063 - MIR3 SINE MIR -115 93 13 251 240 0 0 chr6 46651975 46652025 -135763217 + MER91B DNA MER1_type 81 130 -60 269 241 203 0 chr6 46652044 46652123 -135763119 + MER91B DNA MER1_type 93 187 -3 2108 125 3 7 chr6 46653741 46654037 -135761205 - AluSq SINE Alu -18 295 1 222 261 0 0 chr6 46654501 46654547 -135760695 + C-rich Low_complexity Low_complexity 2 47 0 351 282 0 0 chr6 46656275 46656346 -135758896 + L2 LINE L2 3228 3298 -15 202 258 76 0 chr6 46656426 46656492 -135758750 + MIR SINE MIR 182 252 -10 1742 102 4 4 chr6 46656650 46656885 -135758357 - AluSg/x SINE Alu -2 310 76 368 323 81 0 chr6 46656903 46657027 -135758215 - L2 LINE L2 -2 3270 3137 380 216 34 0 chr6 46657606 46657694 -135757548 - MIR3 SINE MIR -9 199 109 221 184 40 53 chr6 46659128 46659204 -135756038 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 272 220 0 0 chr6 46659376 46659426 -135755816 - L2 LINE L2 -3 3310 3261 22 0 0 0 chr6 46659570 46659592 -135755650 + AT_rich Low_complexity Low_complexity 1 22 0 1380 185 84 3 chr6 46660806 46661163 -135754079 - MER3 DNA MER1_type 0 2619 2234 629 169 51 8 chr6 46661166 46661284 -135753958 - MER3 DNA MER1_type -41 168 46 347 286 45 27 chr6 46661337 46661449 -135753793 - L2 LINE L2 0 3272 3159 783 285 22 113 chr6 46661634 46661927 -135753315 - LTR67 LTR ERVL -11 546 334 2391 76 0 10 chr6 46661927 46662229 -135753013 - AluY SINE Alu -12 299 1 783 285 22 113 chr6 46662229 46662535 -135752707 - LTR67 LTR ERVL -223 334 2 1363 174 7 58 chr6 46662650 46662926 -135752316 + MLT1A1 LTR MaLR 1 262 -103 282 290 28 19 chr6 46663153 46663260 -135751982 + LTR67 LTR ERVL 93 200 -357 392 264 63 25 chr6 46664759 46664918 -135750324 + MIR SINE MIR 23 187 -75 1937 168 8 32 chr6 46665227 46665597 -135749645 + MLT1A1 LTR MaLR 1 361 -4 237 339 33 16 chr6 46665707 46665828 -135749414 + LTR67 LTR ERVL 434 556 -1 1141 207 127 27 chr6 46665868 46666167 -135749075 - MLT1F LTR MaLR 0 542 214 205 247 12 74 chr6 46666445 46666526 -135748716 - MIR SINE MIR -70 192 117 639 231 34 66 chr6 46666558 46666773 -135748469 + MIR SINE MIR 31 247 -15 213 254 0 0 chr6 46667180 46667251 -135747991 + (CA)n Simple_repeat Simple_repeat 1 71 0 516 212 100 116 chr6 46667799 46668247 -135746995 + MLT1J LTR MaLR 22 465 -21 296 263 88 0 chr6 46668255 46668335 -135746907 + MIR SINE MIR 176 262 0 675 256 47 25 chr6 46669081 46669355 -135745887 - L1MD3 LINE L1 -13 7982 6083 434 283 35 17 chr6 46669403 46669576 -135745666 + MIR SINE MIR 5 180 -82 5973 40 6 0 chr6 46670103 46670804 -135744438 - L1PA5 LINE L1 0 6154 5450 187 314 0 0 chr6 46670849 46670900 -135744342 + L2 LINE L2 3136 3186 -86 912 188 12 0 chr6 46671581 46671746 -135743496 - FRAM SINE Alu -10 166 1 578 241 46 62 chr6 46671760 46671955 -135743287 - MIR SINE MIR -56 206 15 1067 258 54 23 chr6 46672153 46672506 -135742736 - L1MD3 LINE L1 -1906 5902 5539 544 332 57 0 chr6 46672844 46673055 -135742187 - MIR SINE MIR 0 262 40 2045 112 63 0 chr6 46673056 46673342 -135741900 - AluSq SINE Alu -9 304 1 279 161 0 0 chr6 46673717 46673773 -135741469 + (TATG)n Simple_repeat Simple_repeat 4 59 0 2282 106 42 33 chr6 46673839 46674198 -135741044 + THE1B LTR MaLR 1 362 -2 402 300 143 13 chr6 46675219 46675449 -135739793 + L2 LINE L2 2016 2275 -1039 419 58 0 0 chr6 46675562 46675614 -135739628 - MLT2B1 LTR ERVL 0 520 469 483 200 12 0 chr6 46675615 46675700 -135739542 - Tigger5 DNA MER2_type 0 2323 2238 256 150 0 0 chr6 46675714 46675754 -135739488 - Tigger5 DNA MER2_type -2271 52 13 437 153 14 14 chr6 46675754 46675826 -135739416 - Tigger5 DNA MER2_type 0 2323 2252 303 222 0 0 chr6 46675797 46675851 -135739391 - Tigger5 DNA MER2_type -2269 54 1 * 2405 231 28 16 chr6 46675859 46676361 -135738881 - MLT2B3 LTR ERVL -46 508 1 352 245 126 42 chr6 46676376 46676519 -135738723 + L2 LINE L2 3158 3312 -1 275 241 328 0 chr6 46676582 46676698 -135738544 - MIR SINE MIR -4 258 105 1003 171 77 174 chr6 46677114 46677528 -135737714 + MLT1A2 LTR MaLR 1 374 0 547 236 9 0 chr6 46677528 46677633 -135737609 + MER81 DNA DNA 9 114 0 423 226 61 26 chr6 46679035 46679150 -135736092 - MER5B DNA MER1_type 0 178 60 591 31 10 42 chr6 46679253 46679349 -135735893 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 1885 103 0 132 chr6 46679363 46679711 -135735531 - AluSp SINE Alu 0 303 2 1949 268 138 23 chr6 46679711 46680020 -135735222 - L1MC4 LINE L1 -131 7911 7639 2069 113 22 19 chr6 46680020 46680331 -135734911 - AluSx SINE Alu 0 312 1 1949 268 138 23 chr6 46680331 46681635 -135733607 - L1MC4 LINE L1 -403 7639 5981 2525 67 0 0 chr6 46682028 46682326 -135732916 + AluSg SINE Alu 2 299 -11 279 312 36 29 chr6 46682890 46683028 -135732214 + L3 LINE CR1 96 234 -1343 491 284 116 33 chr6 46683278 46683703 -135731539 - LTR16C LTR ERVL 0 491 5 437 337 25 25 chr6 46683872 46684071 -135731171 + LTR67 LTR ERVL 4 202 -355 949 278 130 16 chr6 46684218 46684664 -135730578 + L3 LINE CR1 369 865 -712 30 27 0 0 chr6 46685313 46685350 -135729892 + AT_rich Low_complexity Low_complexity 1 37 0 517 174 26 90 chr6 46685393 46685548 -135729694 - MER106B DNA MER1_type -913 146 2 237 119 0 0 chr6 46687021 46687063 -135728179 + (T)n Simple_repeat Simple_repeat 1 42 0 198 176 0 0 chr6 46687114 46687165 -135728077 + T-rich Low_complexity Low_complexity 1 51 0 1075 272 79 3 chr6 46687464 46687762 -135727480 - MLT1I LTR MaLR 0 409 98 237 65 0 0 chr6 46688153 46688184 -135727058 + (T)n Simple_repeat Simple_repeat 1 31 0 29 0 0 0 chr6 46688408 46688437 -135726805 + AT_rich Low_complexity Low_complexity 1 29 0 242 286 160 8 chr6 46689554 46689673 -135725569 - L2 LINE L2 -5 3308 3172 1021 221 187 77 chr6 46689940 46690217 -135725025 - MLT1G LTR MaLR -2 588 343 1828 132 52 14 chr6 46690217 46690504 -135724738 - AluSx SINE Alu -14 298 1 1021 221 187 77 chr6 46690504 46690683 -135724559 - MLT1G LTR MaLR -247 343 185 2317 109 3 0 chr6 46690683 46690987 -135724255 + AluSp SINE Alu 9 313 0 1021 221 187 77 chr6 46690987 46691059 -135724183 - MLT1G LTR MaLR -405 185 1 318 241 0 12 chr6 46691108 46691191 -135724051 + MIR SINE MIR 66 147 -61 341 325 35 0 chr6 46691355 46691469 -135723773 - MIR3 SINE MIR -27 181 64 2082 93 0 43 chr6 46691489 46691789 -135723453 + AluSg1 SINE Alu 1 287 -22 1091 211 140 0 chr6 46694581 46694846 -135720396 + LTR40b LTR ERVL 161 462 0 1047 215 144 89 chr6 46694905 46695342 -135719900 - MLT1L LTR MaLR -6 609 149 1047 175 16 6 chr6 46695345 46695528 -135719714 - MER5A DNA MER1_type -2 187 3 214 254 56 28 chr6 46695543 46695573 -135719669 + MER5B DNA MER1_type 27 55 -123 369 62 0 0 chr6 46695573 46695621 -135719621 + (TG)n Simple_repeat Simple_repeat 1 48 0 214 254 56 28 chr6 46695621 46695661 -135719581 + MER5B DNA MER1_type 55 99 -79 245 326 65 50 chr6 46695716 46696053 -135719189 - L2 LINE L2 -702 2612 2271 247 339 0 85 chr6 46696089 46696313 -135718929 + L2 LINE L2 2553 2757 -557 619 208 16 77 chr6 46696327 46696510 -135718732 - MER5B DNA MER1_type -6 172 1 371 338 25 20 chr6 46696623 46696821 -135718421 + L2 LINE L2 2894 3092 -180 389 261 92 60 chr6 46696881 46697099 -135718143 + MIR SINE MIR 26 250 -12 1187 207 65 19 chr6 46697136 46697445 -135717797 - MER33 DNA MER1_type 0 324 2 425 258 50 25 chr6 46697976 46698096 -135717146 + MIR SINE MIR 61 183 -79 1361 206 106 110 chr6 46698113 46698687 -135716555 + MLT1E LTR MaLR 22 593 0 236 355 18 0 chr6 46699731 46699841 -135715401 + CT-rich Low_complexity Low_complexity 3 114 0 567 246 167 5 chr6 46699885 46700100 -135715142 + MIR SINE MIR 8 257 -5 181 243 214 0 chr6 46700102 46700205 -135715037 - L2 LINE L2 -11 3261 3137 27 62 0 0 chr6 46700917 46700965 -135714277 + AT_rich Low_complexity Low_complexity 1 48 0 209 318 56 19 chr6 46701182 46701289 -135713953 - L2 LINE L2 -50 3222 3112 2235 143 44 29 chr6 46701524 46701979 -135713263 - L1MB7 LINE L1 0 6184 5723 1659 40 0 0 chr6 46702934 46703133 -135712109 + L1PA5 LINE L1 5956 6154 0 211 296 148 42 chr6 46704060 46704202 -135711040 - MIR SINE MIR 0 262 106 276 241 213 60 chr6 46704283 46704494 -135710748 - L1ME4a LINE L1 0 6121 5944 2228 122 0 0 chr6 46704494 46704788 -135710454 - AluSx SINE Alu -18 294 1 276 241 213 60 chr6 46704788 46704895 -135710347 - L1ME4a LINE L1 -177 5944 5754 1681 115 50 112 chr6 46704898 46705281 -135709961 - L1MA4 LINE L1 0 6300 5942 264 236 106 41 chr6 46705493 46705616 -135709626 - L1ME4a LINE L1 -611 5510 5380 * 4766 171 11 10 chr6 46705613 46706518 -135708724 + L1 LINE L1 4051 4956 -1190 20099 179 24 11 chr6 46706536 46713235 -135702007 + L1PA13 LINE L1 1 6808 -6 6051 113 9 0 chr6 46713302 46714461 -135700781 + L1PA16 LINE L1 4985 6165 -1 329 322 8 0 chr6 46714715 46714836 -135700406 + MER117 DNA MER1_type 3 124 -73 225 114 0 0 chr6 46714836 46714871 -135700371 - L1ME4a LINE L1 -798 5380 5346 1607 209 30 10 chr6 46714889 46715295 -135699947 - L1ME4a LINE L1 -943 5203 4790 409 274 174 61 chr6 46715449 46715810 -135699432 - MLT1L LTR MaLR -8 607 206 713 272 40 26 chr6 46716603 46716831 -135698411 - MIR SINE MIR -1 261 31 202 269 42 14 chr6 46716928 46717024 -135698218 + MIR3 SINE MIR 79 176 -32 842 235 66 5 chr6 46717633 46717829 -135697413 + MIR SINE MIR 49 256 -6 211 276 97 83 chr6 46717821 46717966 -135697276 + L2 LINE L2 3165 3311 -2 * 609 300 130 50 chr6 46718383 46718867 -135696375 - Charlie8 DNA MER1_type -1894 523 1 456 333 48 11 chr6 46719169 46719358 -135695884 + MIR SINE MIR 49 244 -18 406 331 14 14 chr6 46719451 46719590 -135695652 - L2 LINE L2 0 3272 3134 218 85 0 43 chr6 46719722 46719769 -135695473 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 307 225 14 28 chr6 46719769 46719840 -135695402 - L1MCa LINE L1 -4363 2063 1994 * 367 219 82 0 chr6 46719798 46719871 -135695371 + L1MC4 LINE L1 6611 6689 -1353 297 0 0 0 chr6 46719871 46719904 -135695338 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 268 24 0 chr6 46719929 46719970 -135695272 - L2 LINE L2 -231 3041 3000 * 582 302 60 4 chr6 46719960 46720195 -135695047 - L2 LINE L2 -915 2399 2152 188 286 54 80 chr6 46720651 46720763 -135694479 - MIR3 SINE MIR -10 198 90 246 167 0 21 chr6 46721035 46721083 -135694159 + L2 LINE L2 3265 3311 -2 212 171 0 24 chr6 46721551 46721592 -135693650 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 1044 254 214 16 chr6 46721644 46722070 -135693172 + L2 LINE L2 2804 3313 0 809 259 77 12 chr6 46722463 46722722 -135692520 + LTR16C LTR ERVL 216 491 0 424 285 67 22 chr6 46722889 46723068 -135692174 + MIR3 SINE MIR 4 190 -18 249 312 32 0 chr6 46724222 46724315 -135690927 - MIR3 SINE MIR -2 206 111 744 237 52 11 chr6 46724329 46724529 -135690713 - MIR SINE MIR -12 250 45 526 253 163 27 chr6 46725048 46725269 -135689973 + MIR SINE MIR 12 262 0 317 259 285 19 chr6 46725920 46726078 -135689164 - MIR SINE MIR 0 262 63 770 232 59 41 chr6 46726121 46726341 -135688901 - MER58A DNA MER1_type 0 224 1 953 252 31 23 chr6 46726402 46726660 -135688582 + MIR SINE MIR 2 261 -1 195 243 157 29 chr6 46726853 46726923 -135688319 - MIR3 SINE MIR -14 194 116 239 235 20 0 chr6 46726924 46726975 -135688267 + MIR SINE MIR 85 136 -72 23 0 0 0 chr6 46726976 46726999 -135688243 + AT_rich Low_complexity Low_complexity 1 23 0 410 233 47 39 chr6 46727022 46727151 -135688091 + MIR SINE MIR 122 251 -11 390 171 53 0 chr6 46727393 46727469 -135687773 + MER116 DNA Mariner 1 80 0 297 282 97 32 chr6 46727472 46727596 -135687646 - MIR SINE MIR -105 157 26 1472 261 100 3 chr6 46728831 46729211 -135686031 + LTR16C LTR ERVL 75 491 0 1664 271 135 7 chr6 46729762 46730565 -135684677 + L2 LINE L2 2256 3171 -142 225 250 0 0 chr6 46730655 46730695 -135684547 + MIR SINE MIR 85 124 -84 528 304 84 22 chr6 46731539 46731812 -135683430 + L2 LINE L2 2607 2896 -418 285 325 70 9 chr6 46731868 46731982 -135683260 + L2 LINE L2 3139 3259 -13 315 203 62 0 chr6 46732320 46732384 -135682858 + MIR SINE MIR 65 132 -76 201 182 0 0 chr6 46732606 46732639 -135682603 + (TTA)n Simple_repeat Simple_repeat 1 33 0 446 198 25 0 chr6 46733188 46733269 -135681973 - MER96 DNA MER1_type? -83 92 10 412 219 24 0 chr6 46733196 46733278 -135681964 + MER96 DNA MER1_type? 92 175 0 * 1578 173 24 76 chr6 46733412 46733479 -135681763 - MLT1A1 LTR MaLR 0 365 296 1998 104 4 0 chr6 46733479 46733783 -135681459 - AluSc SINE Alu 0 306 2 1578 173 24 76 chr6 46733783 46734095 -135681147 - MLT1A1 LTR MaLR -69 296 5 722 213 25 21 chr6 46734281 46734450 -135680792 - MER5A DNA MER1_type -12 166 1 279 241 11 69 chr6 46734760 46734847 -135680395 - MIR SINE MIR -56 206 125 446 291 60 14 chr6 46734861 46735077 -135680165 - MIR SINE MIR -12 250 19 233 167 42 0 chr6 46735664 46735712 -135679530 + GA-rich Low_complexity Low_complexity 1 50 0 977 167 0 33 chr6 46735938 46736118 -135679124 - FRAM SINE Alu -2 174 1 1198 223 138 33 chr6 46736146 46736634 -135678608 + MLT1G1 LTR MaLR 22 587 -4 385 302 108 0 chr6 46736636 46736765 -135678477 + MER112 DNA MER1_type 117 259 -1 4633 118 17 14 chr6 46736854 46737547 -135677695 - MER4E LTR ERV1 0 779 85 519 266 30 30 chr6 46737785 46737954 -135677288 + MER5A DNA MER1_type 3 171 -18 639 259 109 5 chr6 46738020 46738240 -135677002 + MER112 DNA MER1_type 17 259 -1 2101 113 3 10 chr6 46738909 46739211 -135676031 - AluSx SINE Alu -12 300 1 1747 187 7 74 chr6 46739733 46740151 -135675091 + MLT1B LTR MaLR 1 390 0 2323 62 0 3 chr6 46740173 46740464 -135674778 + AluSc SINE Alu 1 290 -19 1492 245 184 18 chr6 46740536 46740835 -135674407 + MER69 DNA AcHobo 3 251 -2275 1829 119 81 44 chr6 46740835 46741195 -135674047 + THE1C LTR MaLR 3 375 0 1492 245 184 18 chr6 46741195 46741401 -135673841 + MER69 DNA AcHobo 251 592 -1934 743 192 105 31 chr6 46741404 46741614 -135673628 + MER69 DNA AcHobo 2281 2511 -15 2192 103 7 0 chr6 46741614 46741915 -135673327 - AluSx SINE Alu -9 303 1 743 192 105 31 chr6 46741915 46741933 -135673309 + MER69 DNA AcHobo 2511 2526 0 306 276 67 19 chr6 46742059 46742164 -135673078 + MIR SINE MIR 30 139 -69 325 235 68 83 chr6 46742448 46742580 -135672662 - L2 LINE L2 -6 3266 3137 443 219 55 39 chr6 46742686 46742814 -135672428 - MER5B DNA MER1_type 0 178 49 7443 155 11 15 chr6 46742818 46743303 -135671939 - L1PB1 LINE L1 -3 6148 5662 210 105 0 0 chr6 46743303 46743341 -135671901 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 7443 155 11 15 chr6 46743341 46744003 -135671239 - L1PB1 LINE L1 -489 5662 4999 2046 122 3 0 chr6 46744003 46744298 -135670944 - AluSx SINE Alu -16 296 1 7443 155 11 15 chr6 46744298 46745501 -135669741 - L1PB1 LINE L1 -1152 4999 3812 230 152 196 0 chr6 46745502 46745548 -135669694 - MER5B DNA MER1_type -123 55 1 405 147 59 0 chr6 46745607 46745675 -135669567 - MER5A DNA MER1_type -85 104 33 1322 298 53 22 chr6 46745691 46746185 -135669057 + L2 LINE L2 2804 3312 -1 221 238 16 48 chr6 46746222 46746285 -135668957 - MIR3 SINE MIR -6 202 142 469 245 196 12 chr6 46746298 46746461 -135668781 - MER20 DNA MER1_type -25 194 2 440 364 7 0 chr6 46746461 46746604 -135668638 - MIR3 SINE MIR -47 161 18 2348 101 20 0 chr6 46747566 46747912 -135667330 + L1MA1 LINE L1 5950 6302 0 307 314 25 34 chr6 46748357 46748475 -135666767 + MIR3 SINE MIR 85 201 -7 281 256 72 40 chr6 46748640 46748765 -135666477 - L2 LINE L2 -6 3307 3179 198 138 0 0 chr6 46749011 46749040 -135666202 - MIR SINE MIR -17 245 217 514 267 236 10 chr6 46751099 46751391 -135663851 + LTR16C LTR ERVL 104 461 -30 657 232 56 15 chr6 46751583 46751781 -135663461 + L2 LINE L2 1274 1479 -1835 624 268 112 13 chr6 46751864 46752088 -135663154 + L2 LINE L2 2996 3241 -72 337 250 169 20 chr6 46752159 46752307 -135662935 - MIR3 SINE MIR -7 201 32 344 271 41 33 chr6 46752701 46752823 -135662419 - MIR SINE MIR -91 171 49 307 259 37 9 chr6 46753600 46753708 -135661534 - MIR3 SINE MIR -48 160 50 25 51 0 0 chr6 46754162 46754201 -135661041 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 46754506 46754527 -135660715 + AT_rich Low_complexity Low_complexity 1 21 0 2425 128 66 0 chr6 46754551 46754917 -135660325 - MLT1B LTR MaLR 0 390 1 332 292 87 28 chr6 46754956 46755360 -135659882 - L1ME LINE L1 -447 5723 5283 1520 324 43 32 chr6 46756084 46756767 -135658475 + L3 LINE CR1 821 1514 -63 1918 82 68 11 chr6 46756767 46757047 -135658195 + AluSg SINE Alu 5 300 -10 1520 324 43 32 chr6 46757047 46757111 -135658131 + L3 LINE CR1 1514 1576 -1 376 182 15 0 chr6 46757369 46757435 -135657807 - MER5A DNA MER1_type 0 189 123 280 274 98 52 chr6 46757435 46757588 -135657654 + MLT1K LTR MaLR 137 296 -292 664 266 45 15 chr6 46757652 46757851 -135657391 + MLT1K LTR MaLR 384 588 0 212 345 49 73 chr6 46758008 46758254 -135656988 - L2 LINE L2 -39 3233 2994 214 240 0 20 chr6 46759021 46759071 -135656171 + L2 LINE L2 3262 3310 -3 376 235 24 0 chr6 46759970 46760055 -135655187 + MER94 DNA DNA 13 99 -35 295 313 62 62 chr6 46760136 46760379 -135654863 - MIR SINE MIR 0 262 20 573 288 19 33 chr6 46760632 46760844 -135654398 - MIR SINE MIR -42 220 12 409 290 48 14 chr6 46761940 46762085 -135653157 - L2 LINE L2 0 3272 3123 2437 207 61 34 chr6 46763431 46764041 -135651201 + MLT1E2 LTR MaLR 1 626 0 452 320 115 32 chr6 46764462 46764715 -135650527 - L3 LINE CR1 -7 1570 1297 215 315 0 0 chr6 46764729 46764783 -135650459 - L2 LINE L2 0 3272 3219 331 265 24 0 chr6 46765193 46765276 -135649966 + MIR SINE MIR 178 262 0 587 285 35 23 chr6 46765518 46765690 -135649552 - MIR SINE MIR -74 188 15 498 251 171 38 chr6 46765910 46766121 -135649121 + MIR SINE MIR 24 262 0 415 271 18 12 chr6 46766365 46766531 -135648711 + L1ME4a LINE L1 5745 5911 -210 225 312 13 0 chr6 46767200 46767277 -135647965 + CT-rich Low_complexity Low_complexity 5 82 0 3715 114 45 87 chr6 46767292 46768018 -135647224 - LTR1 LTR ERV1 -88 697 2 287 349 129 25 chr6 46768020 46768338 -135646904 - L2 LINE L2 -6 3266 2916 337 279 85 39 chr6 46768669 46768798 -135646444 - MIR3 SINE MIR -53 155 21 2004 124 0 0 chr6 46768943 46769254 -135645988 + AluSc SINE Alu 1 311 0 256 284 68 91 chr6 46769487 46769663 -135645579 + MIR3 SINE MIR 10 181 -27 232 266 159 26 chr6 46770112 46770225 -135645017 - MIR3 SINE MIR -17 191 64 240 288 17 0 chr6 46770248 46770307 -135644935 - MIR SINE MIR -116 92 33 1641 208 106 17 chr6 46771009 46771423 -135643819 + MLT1C LTR MaLR 1 451 -16 2178 123 0 0 chr6 46771928 46772237 -135643005 - AluSg SINE Alu -1 309 1 225 335 84 42 chr6 46772497 46772712 -135642530 + L2 LINE L2 2866 3089 -183 441 217 182 78 chr6 46773096 46773354 -135641888 - L1MC4a LINE L1 -1847 5961 5677 2102 97 0 7 chr6 46773364 46773663 -135641579 - AluSc SINE Alu -12 297 1 227 202 0 135 chr6 46774155 46774244 -135640998 + MER5B DNA MER1_type 102 178 0 827 187 39 0 chr6 46774271 46774426 -135640816 + MER5B DNA MER1_type 18 178 0 397 264 148 13 chr6 46774435 46774590 -135640652 - MER5B DNA MER1_type -1 177 2 242 271 29 0 chr6 46774627 46774697 -135640545 + LTR67 LTR ERVL 476 547 -10 23 0 0 0 chr6 46774775 46774798 -135640444 + AT_rich Low_complexity Low_complexity 1 23 0 232 336 71 9 chr6 46775599 46775712 -135639530 + L2 LINE L2 3153 3272 0 390 269 144 30 chr6 46775860 46776061 -135639181 - MLT1L LTR MaLR -248 367 144 1574 237 48 68 chr6 46776625 46777082 -135638160 + L1MEc LINE L1 1981 2394 -3821 3336 169 21 10 chr6 46777082 46777699 -135637543 + L1MB2 LINE L1 5547 6170 -1 1574 237 48 68 chr6 46777699 46778063 -135637179 + L1MEc LINE L1 2394 2764 -3451 305 299 7 21 chr6 46778099 46778243 -135636999 + CT-rich Low_complexity Low_complexity 4 145 0 195 116 93 23 chr6 46778476 46778519 -135636723 - L2 LINE L2 -211 3061 3016 200 325 86 43 chr6 46779438 46779555 -135635687 - MIR3 SINE MIR -22 186 65 982 145 34 125 chr6 46779757 46780109 -135635133 - MER33 DNA MER1_type 0 324 5 860 319 68 11 chr6 46780318 46780700 -135634542 + Charlie7 DNA MER1_type 283 686 -1926 716 250 29 29 chr6 46780781 46780985 -135634257 + L2 LINE L2 2697 2900 -414 379 279 75 7 chr6 46781021 46781168 -135634074 - L1ME3A LINE L1 -219 5951 5795 294 275 101 9 chr6 46781350 46781459 -135633783 + L2 LINE L2 2933 3051 -221 967 173 70 5 chr6 46781481 46781749 -135633493 - LTR54 LTR ERV1 0 510 181 327 65 0 0 chr6 46781859 46781905 -135633337 + (TTCCC)n Simple_repeat Simple_repeat 5 50 0 715 194 16 0 chr6 46781920 46782049 -135633193 - LTR54B LTR ERV1 -360 138 8 2063 159 20 11 chr6 46782138 46782496 -135632746 - MLT1A1 LTR MaLR -4 361 1 204 333 97 42 chr6 46782848 46782992 -135632250 + L2 LINE L2 3121 3272 0 889 245 48 11 chr6 46783521 46783790 -135631452 - LTR33 LTR ERVL -240 281 3 1733 171 0 7 chr6 46783881 46784185 -135631057 - AluJo SINE Alu -10 302 1 424 326 65 0 chr6 46784191 46784329 -135630913 + L2 LINE L2 3122 3268 -4 318 301 54 21 chr6 46784385 46784478 -135630764 - L2 LINE L2 0 3272 3177 555 216 69 0 chr6 46784505 46784621 -135630621 - L2 LINE L2 -1 3312 3189 272 373 40 13 chr6 46785726 46785876 -135629366 + L2 LINE L2 2906 3059 -213 248 302 135 16 chr6 46785982 46786108 -135629134 + L2 LINE L2 3119 3259 -13 222 91 0 0 chr6 46786108 46786141 -135629101 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 203 182 182 0 chr6 46787044 46787088 -135628154 - MIR3 SINE MIR -52 156 105 302 222 16 0 chr6 46787158 46787221 -135628021 - L2 LINE L2 -1 3312 3249 732 264 137 66 chr6 46787234 46787278 -135627964 - MLT1L LTR MaLR -18 597 558 4153 87 7 2 chr6 46787278 46787827 -135627415 - MER41A LTR ERV1 -2 552 1 732 264 137 66 chr6 46787827 46788206 -135627036 - MLT1L LTR MaLR -57 558 144 677 265 7 0 chr6 46788236 46788387 -135626855 + MIR SINE MIR 3 154 -108 804 217 0 69 chr6 46788391 46788667 -135626575 + L1MA4 LINE L1 6044 6300 0 226 247 60 108 chr6 46788870 46789036 -135626206 - L2 LINE L2 -191 3081 2924 243 306 90 75 chr6 46789397 46789652 -135625590 - L2 LINE L2 -903 2411 2153 482 319 82 22 chr6 46790215 46790447 -135624795 + MIR SINE MIR 16 261 -1 866 262 51 13 chr6 46790912 46791149 -135624093 + MIR SINE MIR 7 252 -10 293 309 59 10 chr6 46791774 46791893 -135623349 - MIR SINE MIR -66 142 16 235 352 11 0 chr6 46794031 46794119 -135621123 + L2 LINE L2 2573 2661 -653 251 267 27 0 chr6 46794339 46794414 -135620828 + L2 LINE L2 3195 3271 -1 260 200 0 0 chr6 46795237 46795282 -135619960 + L2 LINE L2 3259 3303 -10 446 281 234 0 chr6 46796367 46796538 -135618704 - MIR SINE MIR -50 212 2 298 247 101 57 chr6 46797674 46797832 -135617410 - MLT1J2 LTR MaLR 0 450 286 273 311 117 11 chr6 46797930 46798110 -135617132 - MLT1J LTR MaLR -312 199 1 205 218 0 36 chr6 46798481 46798536 -135616706 + L2 LINE L2 3217 3269 -3 333 338 36 19 chr6 46799213 46799367 -135615875 - MIR3 SINE MIR -49 159 2 229 368 85 35 chr6 46799759 46799960 -135615282 + L2 LINE L2 2239 2449 -865 221 119 24 0 chr6 46800450 46800492 -135614750 + CT-rich Low_complexity Low_complexity 2 44 0 1339 216 63 62 chr6 46800493 46800641 -135614601 - L1MC5 LINE L1 -45 7916 7770 414 0 0 0 chr6 46800641 46800687 -135614555 + (CA)n Simple_repeat Simple_repeat 2 47 0 1339 216 63 62 chr6 46800687 46801106 -135614136 - L1MC5 LINE L1 -191 7770 7348 230 300 25 38 chr6 46801156 46801236 -135614006 + L2 LINE L2 3234 3312 -1 367 281 62 38 chr6 46801367 46801527 -135613715 + MER5A DNA MER1_type 1 164 -25 253 273 111 93 chr6 46801454 46801626 -135613616 + MIR3 SINE MIR 34 208 0 * 343 293 33 53 chr6 46802101 46802251 -135612991 - L3 LINE CR1 -1109 468 322 2403 191 30 2 chr6 46802599 46803028 -135612214 + MLT1C LTR MaLR 1 441 -26 29 0 0 0 chr6 46803035 46803064 -135612178 + AT_rich Low_complexity Low_complexity 1 29 0 472 308 41 17 chr6 46803079 46803251 -135611991 + MIR SINE MIR 7 182 -80 639 266 84 5 chr6 46803351 46803554 -135611688 + LTR16C LTR ERVL 273 491 0 193 217 83 17 chr6 46803558 46803618 -135611624 + MIR SINE MIR 182 245 -17 1042 194 15 10 chr6 46804437 46804633 -135610609 - MER20 DNA MER1_type -22 197 1 234 292 21 94 chr6 46804713 46804809 -135610433 + MIR SINE MIR 9 97 -165 * 589 306 91 38 chr6 46804796 46805118 -135610124 + L2 LINE L2 2691 3029 -284 227 144 36 194 chr6 46805169 46805308 -135609934 + MIR SINE MIR 145 261 -1 598 205 18 0 chr6 46805458 46805570 -135609672 - MER81 DNA DNA 0 114 1 445 292 38 11 chr6 46805755 46805940 -135609302 + LTR67 LTR ERVL 368 557 0 231 200 29 0 chr6 46806812 46806882 -135608360 - L1ME3 LINE L1 0 6162 6091 * 4714 136 24 36 chr6 46806876 46807741 -135607501 - L1MB7 LINE L1 0 6184 5330 944 231 16 102 chr6 46807731 46807881 -135607361 - L1ME3 LINE L1 -44 6118 5957 * 1961 100 3 24 chr6 46807881 46808194 -135607048 - AluSx SINE Alu 0 307 1 944 231 16 102 chr6 46808194 46808276 -135606966 - L1ME3 LINE L1 -205 5957 5914 1795 141 16 10 chr6 46808276 46808581 -135606661 - AluSx SINE Alu -5 307 1 944 231 16 102 chr6 46808581 46808649 -135606593 - L1ME3 LINE L1 -248 5914 5842 318 308 70 70 chr6 46809118 46809546 -135605696 + L1ME2 LINE L1 5682 6112 -52 642 192 16 16 chr6 46809558 46809811 -135605431 + GA-rich Low_complexity Low_complexity 1 253 0 219 234 13 78 chr6 46810706 46810783 -135604459 - MIR3 SINE MIR -4 204 133 288 0 0 0 chr6 46810867 46810899 -135604343 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 321 6 43 chr6 46811018 46811180 -135604062 + GA-rich Low_complexity Low_complexity 2 157 0 503 181 48 9 chr6 46811803 46811908 -135603334 + MIR SINE MIR 70 178 -84 966 248 135 6 chr6 46812705 46813024 -135602218 + MLT1C LTR MaLR 7 366 -101 610 277 108 26 chr6 46813333 46813564 -135601678 + MIR SINE MIR 13 262 0 242 290 37 28 chr6 46813685 46813792 -135601450 - L2 LINE L2 -215 3057 2950 312 352 83 4 chr6 46814025 46814255 -135600987 - L2 LINE L2 -642 2672 2425 312 281 61 35 chr6 46814265 46814379 -135600863 + L2 LINE L2 3193 3309 -4 4260 165 45 12 chr6 46815685 46816443 -135598799 + LTR39 LTR ERV1 1 783 0 2262 112 0 13 chr6 46816538 46816852 -135598390 + AluSx SINE Alu 3 312 0 2543 118 58 21 chr6 46817504 46817936 -135597306 + LTR7 LTR ERV1 1 448 -2 42436 106 18 25 chr6 46818026 46824442 -135590800 + HERVH LTR ERV1 1520 7713 0 2610 118 56 19 chr6 46824442 46824874 -135590368 + LTR7 LTR ERV1 1 448 -2 279 0 0 0 chr6 46824978 46825009 -135590233 + (CA)n Simple_repeat Simple_repeat 1 31 0 294 132 0 0 chr6 46825348 46825401 -135589841 + (CA)n Simple_repeat Simple_repeat 1 53 0 4826 191 48 20 chr6 46826174 46827224 -135588018 + Tigger6a DNA MER2_type 5 1083 0 2616 142 5 47 chr6 46827430 46827648 -135587594 - MSTA LTR MaLR -4 424 233 4049 105 59 0 chr6 46827648 46828239 -135587003 + L1PB1 LINE L1 5526 6151 0 2616 142 5 47 chr6 46828239 46828463 -135586779 - MSTA LTR MaLR -195 233 1 407 239 34 8 chr6 46828723 46828840 -135586402 + MIR3 SINE MIR 36 155 -53 460 248 102 0 chr6 46829941 46830078 -135585164 - MIR SINE MIR -36 226 76 268 369 6 24 chr6 46830252 46830420 -135584822 + MIR3 SINE MIR 30 194 -14 459 297 8 8 chr6 46830881 46830999 -135584243 + MIR3 SINE MIR 74 191 -17 455 271 57 0 chr6 46831957 46832079 -135583163 + MER91C DNA MER1_type 1 129 -11 580 267 53 32 chr6 46832108 46832295 -135582947 - MIR SINE MIR -33 229 39 1457 152 0 0 chr6 46833809 46834040 -135581202 - AluSg/x SINE Alu 0 310 80 948 240 120 12 chr6 46834973 46835315 -135579927 + Charlie4a DNA MER1_type 4 382 -126 531 228 0 9 chr6 46835571 46835685 -135579557 + Charlie4a DNA MER1_type 387 499 -9 643 228 138 27 chr6 46836327 46836551 -135578691 - MER112 DNA MER1_type -11 249 1 2300 159 0 13 chr6 46837556 46837947 -135577295 + MLT1B LTR MaLR 3 388 -2 592 181 285 0 chr6 46838188 46838332 -135576910 + MER5A DNA MER1_type 5 189 0 3847 86 6 0 chr6 46838760 46839269 -135575973 - L1PA7 LINE L1 -2 6152 5641 412 57 16 0 chr6 46839273 46839335 -135575907 + L1P4 LINE L1 5609 5675 -476 377 269 141 7 chr6 46843244 46843393 -135571849 - MIR3 SINE MIR -9 199 31 1381 191 8 4 chr6 46843774 46844025 -135571217 + L1MDa LINE L1 24 275 -6265 * 4603 218 74 14 chr6 46844022 46845994 -135569248 + L1MDa LINE L1 2082 4173 -2367 1116 224 60 8 chr6 46845990 46846386 -135568856 + L1MD2 LINE L1 5882 6349 -10 * 644 282 169 6 chr6 46849251 46849595 -135565647 - L1MC4a LINE L1 -1842 5966 5567 23 33 0 0 chr6 46850849 46850879 -135564363 + AT_rich Low_complexity Low_complexity 1 30 0 381 256 154 19 chr6 46851230 46851386 -135563856 - L1MC5 LINE L1 -35 7926 7750 564 15 0 0 chr6 46851961 46852026 -135563216 + (CA)n Simple_repeat Simple_repeat 2 66 0 2368 100 0 0 chr6 46852952 46853251 -135561991 + AluSx SINE Alu 5 303 -9 357 248 64 14 chr6 46854857 46854998 -135560244 - MER114 LTR ERV -1 647 500 650 133 1 9 chr6 46854998 46855109 -135560133 + L1MC/D LINE L1 5456 5561 -617 4907 185 39 35 chr6 46855119 46856126 -135559116 - L1MD2 LINE L1 -1 6358 5331 2448 67 0 7 chr6 46856126 46856424 -135558818 - AluY SINE Alu -15 296 1 4907 185 39 35 chr6 46856424 46856650 -135558592 - L1MD2 LINE L1 -1028 5331 5107 876 204 143 0 chr6 46856654 46856850 -135558392 + MER1B DNA MER1_type 1 224 -73 486 146 12 12 chr6 46856851 46856933 -135558309 + MER1B DNA MER1_type 258 339 0 2871 247 46 19 chr6 46856933 46857863 -135557379 - L1MD2 LINE L1 -1036 5110 4156 991 243 95 0 chr6 46857865 46858211 -135557031 - MER114 LTR ERV -180 468 90 2391 75 3 0 chr6 46858500 46858792 -135556450 + AluY SINE Alu 1 293 -18 1721 201 88 34 chr6 46859638 46860081 -135555161 - MLT1C LTR MaLR 0 467 1 2248 112 6 6 chr6 46860116 46860428 -135554814 + AluSx SINE Alu 1 312 0 677 263 234 41 chr6 46861657 46861846 -135553396 + LTR50 LTR ERVL 8 159 -636 7448 52 10 0 chr6 46861846 46862796 -135552446 - L1PA6 LINE L1 0 6154 5203 677 263 234 41 chr6 46862796 46863263 -135551979 + LTR50 LTR ERVL 159 791 -4 347 134 90 0 chr6 46865312 46865379 -135549863 - MLT1A1 LTR MaLR 0 365 293 2185 109 0 0 chr6 46865421 46865750 -135549492 + AluSg SINE Alu 1 283 -27 1689 155 17 3 chr6 46865750 46866046 -135549196 - MLT1A1 LTR MaLR -65 300 1 321 108 185 0 chr6 46867121 46867186 -135548056 - MER58 DNA MER1_type -35 2385 2309 2015 169 0 3 chr6 46868083 46868396 -135546846 + AluJb SINE Alu 1 312 0 985 133 115 37 chr6 46868413 46868631 -135546611 + MER33 DNA MER1_type 35 269 -55 680 159 191 0 chr6 46868844 46869001 -135546241 + MER53 DNA DNA 3 189 0 5099 69 20 11 chr6 46869688 46870341 -135544901 - SVA Other Other 0 1386 728 226 299 34 17 chr6 46872852 46872954 -135542288 + MIR SINE MIR 47 150 -58 191 284 54 40 chr6 46874741 46874815 -135540427 + MIR SINE MIR 54 128 -80 246 333 85 35 chr6 46875490 46875631 -135539611 - MIR3 SINE MIR -22 186 39 575 278 120 10 chr6 46876146 46876355 -135538887 - MIR SINE MIR -21 241 10 453 306 182 24 chr6 46876372 46876581 -135538661 + MIR SINE MIR 21 262 0 749 248 46 53 chr6 46876732 46876899 -135538343 + MLT1B LTR MaLR 1 167 -223 2329 104 0 3 chr6 46876899 46877197 -135538045 + AluSc SINE Alu 1 297 -12 749 248 46 53 chr6 46877197 46877311 -135537931 + MLT1B LTR MaLR 167 280 -110 1226 236 43 64 chr6 46877535 46878111 -135537131 - L1MC5 LINE L1 -54 7907 7344 1584 170 84 40 chr6 46878286 46878821 -135536421 - MLT2A2 LTR ERVL 0 554 1 486 326 114 26 chr6 46878906 46879061 -135536181 + L2 LINE L2 2554 2694 -619 1969 169 0 6 chr6 46879061 46879374 -135535868 - AluJo SINE Alu -1 311 1 486 326 114 26 chr6 46879374 46879907 -135535335 + L2 LINE L2 2694 3303 -10 483 246 64 12 chr6 46880114 46880285 -135534957 - LTR16C LTR ERVL -29 462 283 233 253 58 11 chr6 46880310 46880397 -135534845 - LTR16C LTR ERVL -310 181 91 256 250 23 34 chr6 46880824 46880912 -135534330 - MIR SINE MIR -59 149 63 539 263 74 34 chr6 46881187 46881362 -135533880 + MIR3 SINE MIR 10 191 -17 654 237 40 20 chr6 46881662 46881860 -135533382 + L2 LINE L2 3090 3291 -22 198 0 0 0 chr6 46881869 46881891 -135533351 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 492 289 67 7 chr6 46881898 46882047 -135533195 + MIR3 SINE MIR 7 164 -44 328 281 12 0 chr6 46882202 46882284 -135532958 - L2 LINE L2 -6 3266 3184 246 62 0 0 chr6 46883433 46883465 -135531777 + (TA)n Simple_repeat Simple_repeat 1 32 0 486 207 36 7 chr6 46883521 46883661 -135531581 + LTR33 LTR ERVL 2 145 -376 535 199 47 31 chr6 46883772 46883963 -135531279 + LTR33 LTR ERVL 313 506 -15 472 300 59 12 chr6 46884420 46884673 -135530569 + L2 LINE L2 2817 3081 -232 234 0 0 0 chr6 46884721 46884747 -135530495 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 368 310 10 0 chr6 46885149 46885249 -135529993 + MIR SINE MIR 35 135 -73 283 245 28 57 chr6 46885572 46885678 -135529564 + LTR16C LTR ERVL 32 134 -357 554 260 81 34 chr6 46885713 46885948 -135529294 + LTR16C LTR ERVL 205 450 -41 199 314 57 0 chr6 46885953 46886023 -135529219 + L2 LINE L2 3004 3077 -195 630 223 70 94 chr6 46888116 46888372 -135526870 - MIR SINE MIR -10 252 3 654 299 132 37 chr6 46888491 46888922 -135526320 - L2 LINE L2 0 3313 2842 183 222 22 0 chr6 46889228 46889273 -135525969 - L3b LINE CR1 -5 1578 1533 1019 281 4 4 chr6 46889968 46890214 -135525028 + MIR SINE MIR 17 262 0 237 133 100 83 chr6 46890217 46890277 -135524965 + MER5A DNA MER1_type 129 189 0 201 121 0 0 chr6 46890375 46890408 -135524834 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 998 216 63 18 chr6 46890784 46891006 -135524236 + MIR SINE MIR 10 241 -21 238 259 0 0 chr6 46891199 46891257 -135523985 + MLT1F LTR MaLR 1 58 -484 1206 246 78 0 chr6 46891325 46891634 -135523608 + MLT1F LTR MaLR 210 542 0 236 272 106 64 chr6 46891690 46891925 -135523317 - MLT1L LTR MaLR -154 461 217 229 290 72 0 chr6 46891945 46892014 -135523228 + L3 LINE CR1 1504 1577 0 277 224 235 10 chr6 46892050 46892148 -135523094 + L2 LINE L2 3193 3312 -1 195 388 60 0 chr6 46892148 46892215 -135523027 + L2 LINE L2 3150 3220 -52 279 234 75 21 chr6 46892255 46892349 -135522893 + L2 LINE L2 3208 3306 -7 377 299 69 7 chr6 46893667 46893811 -135521431 - MIR SINE MIR -108 154 2 1736 188 190 5 chr6 46893946 46894372 -135520870 - MLT1D LTR MaLR 0 505 1 383 271 155 13 chr6 46894421 46894576 -135520666 - MIR SINE MIR -67 195 19 199 283 85 38 chr6 46895299 46895405 -135519837 + MIR SINE MIR 106 216 -46 265 246 15 0 chr6 46895486 46895551 -135519691 + CT-rich Low_complexity Low_complexity 3 68 0 1305 164 40 0 chr6 46895647 46895873 -135519369 + MER46A DNA MER2_type 2 236 0 229 182 0 23 chr6 46896080 46896124 -135519118 + GA-rich Low_complexity Low_complexity 2 44 0 434 289 107 13 chr6 46896226 46896375 -135518867 - L2 LINE L2 -1 3271 3109 189 214 0 0 chr6 46896753 46896795 -135518447 + (CA)n Simple_repeat Simple_repeat 2 43 0 372 43 0 0 chr6 46897074 46897120 -135518122 + (TG)n Simple_repeat Simple_repeat 2 47 0 246 265 108 39 chr6 46897566 46897740 -135517502 - MIR SINE MIR -37 225 38 890 262 87 3 chr6 46898176 46898462 -135516780 + LTR16C LTR ERVL 182 491 0 201 244 0 22 chr6 46898481 46898526 -135516716 - MIR SINE MIR -195 67 24 394 192 0 0 chr6 46899708 46899781 -135515461 - Tigger5 DNA MER2_type 0 2323 2251 299 200 0 0 chr6 46899750 46899805 -135515437 - Tigger5 DNA MER2_type -2268 55 1 * 2304 110 0 0 chr6 46900066 46900365 -135514877 - AluSx SINE Alu -10 302 4 506 317 56 118 chr6 46900654 46901121 -135514121 - L2 LINE L2 -18 3254 2817 187 211 14 14 chr6 46901770 46901841 -135513401 + (TA)n Simple_repeat Simple_repeat 2 72 0 325 286 11 22 chr6 46901844 46901935 -135513307 - L1MC4 LINE L1 -1339 6703 6614 294 257 0 33 chr6 46901974 46902157 -135513085 + (TA)n Simple_repeat Simple_repeat 2 178 0 307 311 33 11 chr6 46902161 46902251 -135512991 - L1MC4 LINE L1 -1342 6700 6609 261 260 0 13 chr6 46902301 46902378 -135512864 - HAL1 LINE L1 -289 2218 2143 4066 54 4 0 chr6 46902417 46902916 -135512326 - L1PA7 LINE L1 0 6154 5654 2214 50 0 3 chr6 46902916 46903199 -135512043 + L1PA7 LINE L1 5360 5641 -513 241 161 0 0 chr6 46903291 46903347 -135511895 - L1PA15 LINE L1 -21 6144 6089 3054 136 15 0 chr6 46905313 46905791 -135509451 + MER1A DNA MER1_type 45 529 0 2262 123 25 136 chr6 46906074 46906719 -135508523 + LTR10A LTR ERV1 1 585 -6 452 318 79 39 chr6 46906976 46907382 -135507860 + HAL1 LINE L1 1257 1678 -829 3526 149 4 0 chr6 46907590 46908115 -135507127 - MER1A DNA MER1_type 0 527 1 245 244 94 12 chr6 46908318 46908478 -135506764 + L1MDa LINE L1 2463 2635 -3905 474 304 52 70 chr6 46908504 46908873 -135506369 + L1MDa LINE L1 2666 3027 -3513 304 253 79 63 chr6 46908865 46909055 -135506187 - L1MC5 LINE L1 -192 7769 7577 * 1115 309 113 30 chr6 46909095 46911015 -135504227 + L1MDa LINE L1 3024 5101 -1439 211 226 35 43 chr6 46912067 46912182 -135503060 + GA-rich Low_complexity Low_complexity 2 115 0 21 0 0 0 chr6 46912797 46912818 -135502424 + AT_rich Low_complexity Low_complexity 1 21 0 2387 92 3 0 chr6 46913262 46913565 -135501677 + AluSp SINE Alu 1 304 -9 2394 124 25 3 chr6 46913615 46913971 -135501271 + THE1B LTR MaLR 1 364 0 397 278 99 88 chr6 46914073 46914516 -135500726 - L1MB8 LINE L1 -166 6012 5565 258 161 0 0 chr6 46915673 46915729 -135499513 + L1PA15 LINE L1 6089 6144 -21 2334 50 0 3 chr6 46915821 46916104 -135499138 - L1PA7 LINE L1 -513 5641 5360 4069 54 4 0 chr6 46916104 46916603 -135498639 + L1PA7 LINE L1 5654 6154 0 272 260 0 13 chr6 46916645 46916722 -135498520 + HAL1 LINE L1 2143 2218 -289 360 238 0 33 chr6 46916778 46916959 -135498283 + (TA)n Simple_repeat Simple_repeat 1 175 0 501 223 0 32 chr6 46916972 46917320 -135497922 + (TA)n Simple_repeat Simple_repeat 1 336 0 578 156 0 48 chr6 46917340 46917526 -135497716 + (TA)n Simple_repeat Simple_repeat 2 178 0 6109 216 40 5 chr6 46917526 46919459 -135495783 - L1 LINE L1 -797 5349 3317 854 232 53 23 chr6 46921619 46921940 -135493302 - L1MC3 LINE L1 -8 7777 5999 1531 204 0 23 chr6 46923354 46923783 -135491459 + AluJb SINE Alu 12 433 0 542 277 12 0 chr6 46924333 46924499 -135490743 - L1MC3 LINE L1 -3 7782 7615 1165 229 88 0 chr6 46924509 46924814 -135490428 - L1MA8 LINE L1 -10 6281 5950 * 2940 212 39 14 chr6 46924812 46925347 -135489895 - L1MC3 LINE L1 -157 7628 7071 1231 231 21 80 chr6 46925347 46925733 -135489509 - MLT1A1 LTR MaLR -2 363 1 2940 212 39 14 chr6 46925733 46925891 -135489351 - L1MC3 LINE L1 -714 7071 6918 2719 143 15 0 chr6 46929046 46929451 -135485791 + MER1A DNA MER1_type 45 455 -74 3128 146 17 2 chr6 46930996 46931474 -135483768 + MER1A DNA MER1_type 45 529 0 407 304 101 51 chr6 46931995 46932449 -135482793 + HAL1 LINE L1 1257 1733 -774 3359 154 2 17 chr6 46932603 46933137 -135482105 - MER1A DNA MER1_type -1 526 1 313 276 81 60 chr6 46933402 46933869 -135481373 + L1M4 LINE L1 2112 2588 -3558 29 28 0 0 chr6 46933996 46934032 -135481210 + AT_rich Low_complexity Low_complexity 1 36 0 237 217 35 26 chr6 46934061 46934176 -135481066 + (TA)n Simple_repeat Simple_repeat 1 116 0 770 300 146 40 chr6 46934426 46936038 -135479204 + L1M4 LINE L1 2940 4721 -1425 215 311 0 0 chr6 46937068 46937136 -135478106 + G-rich Low_complexity Low_complexity 1 68 0 234 217 83 0 chr6 46939053 46939113 -135476129 + MLT1J LTR MaLR 437 501 -10 266 263 44 15 chr6 46939390 46939527 -135475715 - HAL1 LINE L1 -940 1567 1427 225 94 0 0 chr6 46939569 46939601 -135475641 + (T)n Simple_repeat Simple_repeat 1 32 0 563 120 120 9 chr6 46939684 46939792 -135475450 - 5S rRNA rRNA 0 121 2 265 322 33 43 chr6 46939985 46940196 -135475046 - L1MEd LINE L1 -4863 1256 1048 2557 67 0 6 chr6 46940712 46941025 -135474217 + AluY SINE Alu 1 311 0 899 241 53 34 chr6 46941304 46941694 -135473548 + L1M3de LINE L1 1298 1940 -4521 343 248 120 0 chr6 46941697 46941814 -135473428 + L1ME1 LINE L1 6028 6158 -8 258 105 0 0 chr6 46942357 46942395 -135472847 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 1155 198 56 31 chr6 46942622 46942936 -135472306 + MER93b LTR ERV1 74 373 0 203 250 18 0 chr6 46943330 46943386 -135471856 + GA-rich Low_complexity Low_complexity 6 62 0 297 109 0 0 chr6 46943407 46943453 -135471789 + (TG)n Simple_repeat Simple_repeat 1 46 0 22062 51 5 1 chr6 46943745 46947237 -135468005 + L1PA5 LINE L1 2659 6153 -1 268 277 176 13 chr6 46948404 46948563 -135466679 - MIR SINE MIR -77 185 1 199 245 0 0 chr6 46949233 46949282 -135465960 + L2 LINE L2 3180 3228 -85 296 271 8 74 chr6 46949967 46950089 -135465153 - MIR SINE MIR -109 153 40 504 282 112 62 chr6 46950104 46950462 -135464780 - L2 LINE L2 0 3272 2897 2264 132 0 3 chr6 46950471 46950782 -135464460 + AluSx SINE Alu 1 310 -2 407 317 49 6 chr6 46951362 46951526 -135463716 - MIR3 SINE MIR -8 200 30 202 206 32 0 chr6 46952523 46952586 -135462656 + CT-rich Low_complexity Low_complexity 4 68 0 197 273 7 26 chr6 46952695 46952849 -135462393 + (TCCA)n Simple_repeat Simple_repeat 1 151 0 259 277 80 0 chr6 46953373 46953485 -135461757 + MIR3 SINE MIR 14 134 -74 259 272 25 25 chr6 46953610 46953691 -135461551 + MER5B DNA MER1_type 50 130 -48 676 222 25 12 chr6 46953970 46954132 -135461110 + MER3 DNA MER1_type 12 128 -81 * 1236 229 158 8 chr6 46954128 46954494 -135460748 - MER110A LTR ERV1 -47 421 1 2007 228 109 7 chr6 46954583 46955031 -135460211 + REP3 LTR ERV 3 496 -66 403 125 47 0 chr6 46955030 46955094 -135460148 + AluSc SINE Alu 227 293 -6 * 387 259 0 0 chr6 46955090 46955171 -135460071 + REP3 LTR ERV 482 562 0 * 4460 260 28 87 chr6 46955238 46957001 -135458241 + L1PB4 LINE L1 10 1655 -5194 887 254 52 108 chr6 46957001 46957707 -135457535 + PABL_B LTR ERV1 1 667 0 4460 260 28 87 chr6 46957707 46957837 -135457405 + L1PB4 LINE L1 1655 1791 -5058 15798 134 44 11 chr6 46957846 46959066 -135456176 + L1PBa LINE L1 3 1181 -5682 2361 118 28 25 chr6 46959066 46959429 -135455813 + THE1B LTR MaLR 1 364 0 15798 134 44 11 chr6 46959429 46960798 -135454444 + L1PBa LINE L1 1181 2679 -4184 3234 104 7 4 chr6 46960802 46961263 -135453979 + L1PB2 LINE L1 5683 6144 -7 5152 195 21 48 chr6 46961287 46963219 -135452023 + L1PB4 LINE L1 1775 3646 -3202 546 85 0 0 chr6 46963241 46963323 -135451919 + AluSp/q SINE Alu 232 313 0 3786 174 32 32 chr6 46963336 46964388 -135450854 + L1PB4 LINE L1 4213 5263 -1595 2184 121 0 0 chr6 46964388 46964722 -135450520 + AluSx SINE Alu 1 334 0 3786 174 32 32 chr6 46964722 46966207 -135449035 + L1PB4 LINE L1 5263 6853 -5 353 322 70 19 chr6 46966262 46966532 -135448710 + L1MC/D LINE L1 5308 5591 -768 657 311 41 13 chr6 46966599 46966914 -135448328 - L1M4 LINE L1 -1034 5112 4789 182 125 0 25 chr6 46966996 46967036 -135448206 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 472 173 97 102 chr6 46967225 46967451 -135447791 - LTR37A LTR ERV1 -9 417 193 801 152 0 23 chr6 46967776 46967908 -135447334 + AluJo SINE Alu 1 129 -183 198 363 7 67 chr6 46968116 46968251 -135446991 - MIR SINE MIR -61 147 21 247 267 12 35 chr6 46968796 46968882 -135446360 - MIR SINE MIR -83 125 42 255 311 148 33 chr6 46969571 46969693 -135445549 + MIR SINE MIR 34 169 -93 427 227 109 34 chr6 46969790 46969909 -135445333 - MIR3 SINE MIR -45 163 36 312 0 41 20 chr6 46970593 46970642 -135444600 + (TA)n Simple_repeat Simple_repeat 2 51 0 1705 162 26 10 chr6 46970862 46971165 -135444077 - AluJo SINE Alu -4 308 1 703 274 43 21 chr6 46971378 46971612 -135443630 - MIR SINE MIR -10 252 14 228 35 0 0 chr6 46972085 46972114 -135443128 + (CAG)n Simple_repeat Simple_repeat 3 31 0 407 264 40 27 chr6 46972637 46972785 -135442457 + MER5A DNA MER1_type 18 167 -22 372 300 9 18 chr6 46972693 46972803 -135442439 - MER5A DNA MER1_type -63 126 18 * 182 300 0 0 chr6 46972948 46972998 -135442244 - MIR SINE MIR -3 259 210 265 297 41 28 chr6 46973413 46973558 -135441684 + LTR67 LTR ERVL 406 552 -5 367 299 34 27 chr6 46973565 46973712 -135441530 - MIR SINE MIR -101 161 14 1062 283 110 13 chr6 46973722 46974196 -135441046 - LTR33 LTR ERVL 0 521 2 180 268 82 41 chr6 46974423 46974520 -135440722 - MER5A DNA MER1_type -88 101 1 268 274 128 0 chr6 46976661 46976778 -135438464 + MIR SINE MIR 17 148 -60 355 203 78 0 chr6 46977055 46977119 -135438123 + AluJo SINE Alu 133 201 -101 23 0 0 0 chr6 46977219 46977242 -135438000 + AT_rich Low_complexity Low_complexity 1 23 0 335 306 94 6 chr6 46977880 46978050 -135437192 + LTR16C LTR ERVL 244 428 -63 1879 131 0 41 chr6 46978060 46978374 -135436868 - AluJo SINE Alu 0 312 12 383 189 63 0 chr6 46978449 46978544 -135436698 + LTR33A LTR ERVL 373 473 -50 1656 151 57 13 chr6 46978547 46978846 -135436396 + AluJb SINE Alu 1 312 0 3942 135 32 6 chr6 46978989 46979611 -135435631 + MER51C LTR ERV1 1 638 -2 309 347 123 5 chr6 46980116 46980335 -135434907 + L1ME4a LINE L1 5744 5988 -133 333 323 15 23 chr6 46980456 46980589 -135434653 - MER5B DNA MER1_type -1 177 46 256 278 83 0 chr6 46980704 46980812 -135434430 - MIR3 SINE MIR -78 130 14 413 198 9 0 chr6 46981329 46981435 -135433807 + (TGGA)n Simple_repeat Simple_repeat 1 107 0 240 269 15 15 chr6 46981538 46981605 -135433637 + GA-rich Low_complexity Low_complexity 2 68 0 300 309 45 9 chr6 46981855 46981965 -135433277 - L2 LINE L2 0 3272 3159 291 297 0 0 chr6 46982063 46982137 -135433105 + MER5A DNA MER1_type 9 82 -107 214 277 15 0 chr6 46982996 46983061 -135432181 - MIR3 SINE MIR -49 159 94 654 278 97 104 chr6 46983435 46983588 -135431654 + MLT1K LTR MaLR 18 171 -417 1886 124 10 7 chr6 46983588 46983879 -135431363 + AluSx SINE Alu 1 292 -20 222 37 0 0 chr6 46983879 46983906 -135431336 + (CA)n Simple_repeat Simple_repeat 2 28 0 654 278 97 104 chr6 46983906 46984259 -135430983 + MLT1K LTR MaLR 169 521 -67 960 143 63 81 chr6 46984289 46984512 -135430730 + MER20 DNA MER1_type 1 219 0 198 278 28 42 chr6 46985143 46985215 -135430027 - L2 LINE L2 -1 3271 3201 817 246 30 15 chr6 46985454 46985653 -135429589 - MIR SINE MIR -27 235 34 286 283 168 0 chr6 46986275 46986388 -135428854 + L2 LINE L2 3178 3309 -4 502 323 91 91 chr6 46987432 46988116 -135427126 + HAL1b LINE L1 79 558 -790 879 183 20 7 chr6 46988781 46988934 -135426308 - MER7A DNA MER2_type -1 345 191 1085 151 63 39 chr6 46989053 46989259 -135425983 - MER7A DNA MER2_type -135 211 3 475 81 0 0 chr6 46989311 46989373 -135425869 - PRIMA41-int LTR ERV1 -67 7689 7628 810 195 298 7 chr6 46989825 46990127 -135425115 - LTR50 LTR ERVL -324 471 82 530 167 0 0 chr6 46990209 46990293 -135424949 - MER41-int LTR ERV1 -2314 2701 2618 * 3817 112 34 93 chr6 46990279 46991072 -135424170 - MER41-int LTR ERV1 -3840 3976 3231 3751 130 30 29 chr6 46991054 46991678 -135423564 - MER41-int LTR ERV1 -5321 625 1 * 24 32 0 0 chr6 46991756 46991787 -135423455 + AT_rich Low_complexity Low_complexity 1 31 0 548 245 43 12 chr6 46993164 46993327 -135421915 + AluJb SINE Alu 140 307 -5 312 0 41 20 chr6 46993548 46993597 -135421645 + (TA)n Simple_repeat Simple_repeat 2 51 0 527 272 41 28 chr6 46994558 46994880 -135420362 + L1MDa LINE L1 1311 1635 -4905 311 248 128 8 chr6 46994883 46995000 -135420242 + L1ME1 LINE L1 6028 6158 -8 202 206 32 0 chr6 46996248 46996311 -135418931 + CT-rich Low_complexity Low_complexity 4 68 0 438 337 11 6 chr6 46996400 46996575 -135418667 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 400 309 53 29 chr6 46997056 46997299 -135417943 - MIR SINE MIR -2 260 12 258 341 55 0 chr6 46997613 46997704 -135417538 - MIR SINE MIR -48 214 119 217 281 208 0 chr6 46998692 46998788 -135416454 + L2 LINE L2 3194 3309 -4 661 234 64 23 chr6 46998851 46999022 -135416220 + MLT1C LTR MaLR 290 467 0 24 0 0 0 chr6 46999343 46999367 -135415875 + AT_rich Low_complexity Low_complexity 1 24 0 416 327 63 19 chr6 46999554 46999759 -135415483 + MIR SINE MIR 31 244 -18 464 309 85 15 chr6 46999762 46999963 -135415279 - L2 LINE L2 -4 3309 3095 506 292 132 24 chr6 46999969 47000219 -135415023 + MLT2F LTR ERVL 7 283 -380 539 199 136 57 chr6 47000347 47000523 -135414719 + MLT1J2 LTR MaLR 118 307 -143 844 117 8 8 chr6 47000805 47000933 -135414309 + AluSq/x SINE Alu 3 130 -182 820 121 0 0 chr6 47001033 47001149 -135414093 - THE1B LTR MaLR -248 116 1 6193 192 50 7 chr6 47001149 47002370 -135412872 - L1PBa LINE L1 -5588 1275 3 708 246 14 14 chr6 47002534 47002741 -135412501 + L1ME2 LINE L1 5740 5946 -218 258 0 71 0 chr6 47002763 47002805 -135412437 + (TG)n Simple_repeat Simple_repeat 2 46 0 1631 141 22 4 chr6 47002805 47003081 -135412161 - AluSg SINE Alu -29 281 1 1445 248 30 23 chr6 47003154 47003626 -135411616 - L1M4 LINE L1 -1199 4947 4473 231 268 0 0 chr6 47003625 47003681 -135411561 + L1ME2 LINE L1 6024 6079 -85 * 187 292 15 0 chr6 47004574 47004639 -135410603 - MIR3 SINE MIR -49 159 94 1152 146 5 18 chr6 47005166 47005385 -135409857 + AluSp SINE Alu 1 216 -97 555 181 9 0 chr6 47005485 47005590 -135409652 - MER41A-int LTR ERV1 -7650 106 1 4517 63 5 0 chr6 47006441 47006992 -135408250 - MER41A LTR ERV1 0 554 1 797 203 69 17 chr6 47007048 47007280 -135407962 + L1M4 LINE L1 3645 3888 -2258 1981 85 30 0 chr6 47008537 47008833 -135406409 - AluSx SINE Alu 0 306 3 2093 85 3 3 chr6 47008843 47009158 -135406084 - AluY SINE Alu 0 315 1 604 202 8 8 chr6 47009158 47009282 -135405960 - MLT1D LTR MaLR -381 124 1 788 76 19 0 chr6 47009463 47009568 -135405674 - MER41A-int LTR ERV1 -4766 1180 1074 * 3989 112 29 30 chr6 47009552 47010178 -135405064 - MER41A-int LTR ERV1 -5321 625 1 24 32 0 0 chr6 47010256 47010287 -135404955 + AT_rich Low_complexity Low_complexity 1 31 0 3963 96 9 4 chr6 47010983 47011534 -135403708 - MER41A LTR ERV1 0 554 1 3326 188 68 18 chr6 47011590 47012379 -135402863 + L1M4 LINE L1 3645 4473 -1673 4648 217 35 19 chr6 47012519 47013463 -135401779 + L1PA13 LINE L1 2 960 -5827 288 0 0 0 chr6 47013561 47013593 -135401649 + (CTG)n Simple_repeat Simple_repeat 1 32 0 5586 234 35 26 chr6 47013721 47014653 -135400589 + L1PA15 LINE L1 132 1055 -5742 288 0 0 0 chr6 47014653 47014685 -135400557 + (CTG)n Simple_repeat Simple_repeat 1 32 0 5586 234 35 26 chr6 47014685 47015848 -135399394 + L1PA15 LINE L1 1055 2207 -4590 212 0 36 0 chr6 47015848 47015876 -135399366 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2298 149 26 65 chr6 47015878 47016262 -135398980 - L1PB3 LINE L1 -7 6147 5782 411 21 0 0 chr6 47016262 47016310 -135398932 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 2298 149 26 65 chr6 47016310 47016387 -135398855 - L1PB3 LINE L1 -372 5782 5704 5586 234 35 26 chr6 47016387 47016582 -135398660 + L1PA15 LINE L1 2207 2671 -4126 2579 148 21 23 chr6 47016582 47016787 -135398455 + MSTB LTR MaLR 1 205 -221 4579 163 60 58 chr6 47016787 47017856 -135397386 - MER11C LTR ERVK 0 1071 1 2579 148 21 23 chr6 47017856 47018077 -135397165 + MSTB LTR MaLR 205 426 0 14263 187 35 18 chr6 47018080 47019179 -135396063 + L1PA15 LINE L1 2670 3748 -3068 243 0 0 0 chr6 47019179 47019206 -135396036 + (TA)n Simple_repeat Simple_repeat 2 28 0 14263 187 35 18 chr6 47019206 47022127 -135393115 + L1PA15 LINE L1 3748 6814 -2 704 146 0 0 chr6 47022167 47022270 -135392972 - U6 snRNA snRNA -4 103 1 994 212 35 74 chr6 47022271 47022386 -135392856 + MSTD LTR MaLR 77 195 -201 2028 151 125 10 chr6 47022386 47022770 -135392472 + MSTA LTR MaLR 1 428 0 994 212 35 74 chr6 47022770 47022937 -135392305 + MSTD LTR MaLR 195 348 -48 2461 211 53 7 chr6 47022940 47023688 -135391554 + L1M4 LINE L1 4465 5381 -765 961 229 48 0 chr6 47023724 47023912 -135391330 + MER63A DNA MER1_type 13 209 -1 537 275 104 53 chr6 47024622 47024996 -135390246 + MLT1I LTR MaLR 1 393 -16 1292 94 12 0 chr6 47025347 47025517 -135389725 - AluSx SINE Alu -140 172 1 2024 121 0 17 chr6 47025700 47025998 -135389244 - AluSx SINE Alu -19 293 1 189 0 0 0 chr6 47026064 47026085 -135389157 + (T)n Simple_repeat Simple_repeat 1 21 0 731 249 148 0 chr6 47026507 47026736 -135388506 - MLT1J LTR MaLR -4 507 245 1219 276 39 18 chr6 47026860 47027302 -135387940 - L1MCc LINE L1 -5938 485 35 249 323 142 19 chr6 47027321 47027637 -135387605 + L1M4c LINE L1 1299 1653 -4731 254 182 18 18 chr6 47027642 47027697 -135387545 - MLT1J LTR MaLR -8 503 449 553 187 47 0 chr6 47029154 47029261 -135385981 - L1MCa LINE L1 -6308 118 7 288 305 0 0 chr6 47029661 47029743 -135385499 + (TG)n Simple_repeat Simple_repeat 2 83 0 1872 162 3 10 chr6 47030594 47030884 -135384358 + AluJo SINE Alu 1 288 -24 412 305 61 20 chr6 47031021 47031218 -135384024 + MIR SINE MIR 45 249 -13 476 293 86 0 chr6 47031222 47031396 -135383846 - L2 LINE L2 -8 3305 3117 551 271 75 10 chr6 47031423 47031673 -135383569 + MLT2E LTR ERVL 7 283 -380 543 207 134 56 chr6 47031798 47031977 -135383265 + MLT1J2 LTR MaLR 115 307 -143 470 322 75 51 chr6 47032070 47032256 -135382986 + L1 LINE L1 3110 3290 -2856 2228 121 0 13 chr6 47032256 47032569 -135382673 + AluSx SINE Alu 1 309 -3 470 322 75 51 chr6 47032569 47032985 -135382257 + L1 LINE L1 3290 3726 -2420 2664 268 206 26 chr6 47033020 47034655 -135380587 + HAL1 LINE L1 12 1940 -567 921 222 31 73 chr6 47034865 47035153 -135380089 - MER93b LTR ERV1 0 373 98 1194 221 127 82 chr6 47035911 47036543 -135378699 - MER93b-int LTR ERV1 -188 4748 4089 503 183 32 0 chr6 47036595 47036688 -135378554 - LTR49-int LTR ERV1 -906 5425 5330 * 2035 196 66 5 chr6 47036687 47037125 -135378117 - LTR49-int LTR ERV1 -1189 3747 3283 1342 196 121 9 chr6 47037145 47037467 -135377775 - LTR49-int LTR ERV1 -1786 3150 2793 629 238 24 6 chr6 47038290 47038458 -135376784 + MER5B DNA MER1_type 7 177 -1 715 257 147 28 chr6 47040193 47040512 -135374730 - LTR18A LTR ERVL 0 357 1 2344 108 0 0 chr6 47040558 47040854 -135374388 - AluSx SINE Alu -16 296 1 22 0 0 0 chr6 47041270 47041292 -135373950 + AT_rich Low_complexity Low_complexity 1 22 0 324 336 0 0 chr6 47041611 47041715 -135373527 - L1ME1 LINE L1 -74 6092 5989 * 806 240 15 0 chr6 47041711 47041915 -135373327 + L1ME2 LINE L1 5740 5946 -218 187 53 26 26 chr6 47041927 47041965 -135373277 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 2071 108 21 3 chr6 47041968 47042255 -135372987 - AluSg SINE Alu -18 292 1 2176 203 88 15 chr6 47042256 47042799 -135372443 - L1M4 LINE L1 -1091 5055 4473 249 288 0 0 chr6 47042798 47042864 -135372378 + L1ME2 LINE L1 6024 6089 -75 * 2536 261 72 10 chr6 47042975 47043856 -135371386 - L1M4 LINE L1 -1658 4488 3554 253 175 0 0 chr6 47043900 47043940 -135371302 + L1M4 LINE L1 3522 3561 -2585 221 260 208 0 chr6 47044139 47044235 -135371007 + L2 LINE L2 3194 3309 -4 641 234 64 23 chr6 47044298 47044469 -135370773 + MLT1C LTR MaLR 290 467 0 24 0 0 0 chr6 47044790 47044814 -135370428 + AT_rich Low_complexity Low_complexity 1 24 0 243 344 80 13 chr6 47045123 47045274 -135369968 - HAL1b LINE L1 -778 570 410 340 333 26 0 chr6 47045426 47045540 -135369702 + MLT1I LTR MaLR 106 222 -187 546 217 244 17 chr6 47045905 47046085 -135369157 - MER58A DNA MER1_type -3 221 1 1159 301 29 24 chr6 47046089 47046711 -135368531 + HAL1 LINE L1 1716 2340 -167 356 254 83 51 chr6 47046888 47047105 -135368137 - L1ME LINE L1 -476 5645 5422 379 288 62 37 chr6 47047544 47047787 -135367455 - MIR SINE MIR -2 260 12 239 330 55 0 chr6 47048100 47048191 -135367051 - MIR SINE MIR -48 214 119 2252 111 3 0 chr6 47048886 47049184 -135366058 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr6 47049187 47049217 -135366025 + AT_rich Low_complexity Low_complexity 1 30 0 1590 117 36 45 chr6 47049281 47049405 -135365837 + L1MA9 LINE L1 6008 6132 -180 2277 62 3 84 chr6 47049405 47049727 -135365515 + AluY SINE Alu 1 296 -15 1590 117 36 45 chr6 47049727 47049910 -135365332 + L1MA9 LINE L1 6132 6312 0 407 282 111 41 chr6 47050277 47050593 -135364649 - L1ME LINE L1 -400 5721 5384 21 0 0 0 chr6 47050915 47050936 -135364306 + AT_rich Low_complexity Low_complexity 1 21 0 406 308 0 21 chr6 47052713 47052856 -135362386 + MIR3 SINE MIR 6 145 -63 360 0 0 0 chr6 47053836 47053876 -135361366 + (CA)n Simple_repeat Simple_repeat 2 41 0 273 257 162 18 chr6 47054115 47054285 -135360957 + MIR SINE MIR 29 225 -37 976 190 140 14 chr6 47056587 47056808 -135358434 + MER58B DNA MER1_type 93 341 0 352 136 200 16 chr6 47056859 47056984 -135358258 - MER5C DNA MER1_type -50 274 127 2101 85 30 0 chr6 47058773 47059069 -135356173 - AluSx SINE Alu 0 306 3 2275 78 3 3 chr6 47059079 47059394 -135355848 - AluY SINE Alu 0 315 1 646 186 8 8 chr6 47059394 47059518 -135355724 - MLT1D LTR MaLR -381 124 1 28 86 0 0 chr6 47059743 47059813 -135355429 + AT_rich Low_complexity Low_complexity 1 70 0 2147 92 3 3 chr6 47059857 47060171 -135355071 - AluSx SINE Alu 0 314 1 504 262 0 0 chr6 47060348 47060470 -135354772 - MER5C DNA MER1_type -200 124 3 389 243 17 23 chr6 47062096 47062273 -135352969 + CT-rich Low_complexity Low_complexity 1 176 0 790 210 6 6 chr6 47063051 47063213 -135352029 + FRAM SINE Alu 9 170 -6 610 172 70 0 chr6 47063214 47063342 -135351900 - MER57A LTR ERV1 -13 390 254 * 1502 151 47 35 chr6 47063330 47063636 -135351606 - LTR54 LTR ERV1 -136 374 1 774 272 160 60 chr6 47064110 47065049 -135350193 - HAL1 LINE L1 -1250 1257 225 1819 289 97 40 chr6 47065305 47066407 -135348835 + L2 LINE L2 65 1229 -2085 369 213 0 39 chr6 47066507 47066634 -135348608 + GA-rich Low_complexity Low_complexity 4 125 0 1109 146 0 0 chr6 47066777 47066935 -135348307 + AluJb SINE Alu 136 293 -19 507 293 141 27 chr6 47066956 47067359 -135347883 + L2 LINE L2 1612 2060 -1254 1762 204 143 50 chr6 47067362 47067866 -135347376 - MLT1F1 LTR MaLR -16 551 1 569 278 51 82 chr6 47067873 47068226 -135347016 - MLT1F1-int LTR MaLR -7 1364 1023 314 314 52 26 chr6 47068428 47068581 -135346661 - MLT1F1-int LTR MaLR -496 875 719 61 45 0 0 chr6 47068718 47068807 -135346435 + AT_rich Low_complexity Low_complexity 1 89 0 198 75 0 57 chr6 47068807 47068860 -135346382 + (TTTTTA)n Simple_repeat Simple_repeat 5 54 0 35 0 0 0 chr6 47068860 47068895 -135346347 + AT_rich Low_complexity Low_complexity 1 35 0 305 233 81 12 chr6 47068928 47069014 -135346228 + MER21B LTR ERV1 15 106 -757 * 1177 231 61 88 chr6 47069012 47069423 -135345819 + MER21B LTR ERV1 19 418 -445 877 278 23 4 chr6 47069549 47069815 -135345427 - MLT1F1-int LTR MaLR -765 606 336 200 346 12 12 chr6 47069817 47069898 -135345344 + MIR SINE MIR 74 154 -108 273 255 128 11 chr6 47070452 47070546 -135344696 + MIR SINE MIR 88 192 -70 491 245 110 31 chr6 47070800 47070963 -135344279 + MIR3 SINE MIR 4 179 -29 2332 73 3 0 chr6 47071520 47071820 -135343422 + AluSp SINE Alu 1 301 -12 407 305 67 48 chr6 47071893 47072103 -135343139 + L1MC5 LINE L1 7611 7824 -137 2206 101 3 0 chr6 47073511 47073808 -135341434 + AluSg SINE Alu 1 298 -12 842 325 38 21 chr6 47073851 47074430 -135340812 + L1MC4a LINE L1 5255 5843 -1965 1296 104 6 0 chr6 47074545 47074728 -135340514 + MSTA LTR MaLR 1 184 -244 1920 87 0 0 chr6 47074728 47074980 -135340262 + L1PA5 LINE L1 5903 6154 0 1050 111 105 0 chr6 47074986 47075148 -135340094 + MSTA LTR MaLR 248 426 0 287 200 0 0 chr6 47075154 47075204 -135340038 + MER4-int LTR ERV1 1107 1156 -5442 1332 225 36 23 chr6 47075709 47076090 -135339152 + L1ME1 LINE L1 5665 6082 -82 224 273 0 0 chr6 47076152 47076207 -135339035 + CT-rich Low_complexity Low_complexity 4 58 0 223 196 36 54 chr6 47076339 47076395 -135338847 - MIR SINE MIR -61 147 93 812 250 113 15 chr6 47076770 47077098 -135338144 + L1MC4a LINE L1 5625 5984 -1824 3065 208 114 53 chr6 47077215 47077298 -135337944 + L1MD2 LINE L1 1 77 -6463 666 0 79 0 chr6 47077298 47077412 -135337830 + (TA)n Simple_repeat Simple_repeat 2 124 0 3065 208 114 53 chr6 47077412 47077966 -135337276 + L1MD2 LINE L1 77 596 -5944 2430 66 0 0 chr6 47077966 47078267 -135336975 - AluY SINE Alu -10 301 1 3065 208 114 53 chr6 47078267 47079323 -135335919 + L1MD2 LINE L1 596 1991 -4549 * 8464 174 17 7 chr6 47079318 47080724 -135334518 + MSTA-int LTR MaLR 232 1651 0 2394 141 95 0 chr6 47080724 47081115 -135334127 + MSTA LTR MaLR 1 428 0 10162 209 53 29 chr6 47081120 47082273 -135332969 + L1MD2 LINE L1 2795 3918 -2718 1978 139 7 0 chr6 47082273 47082583 -135332659 + AluJb SINE Alu 1 312 0 10162 209 53 29 chr6 47082583 47083064 -135332178 + L1MD2 LINE L1 3918 4386 -2250 1974 135 0 3 chr6 47083064 47083361 -135331881 - AluSx SINE Alu -16 296 1 10162 209 53 29 chr6 47083361 47083857 -135331385 + L1MD2 LINE L1 4386 4868 -1768 2102 99 7 7 chr6 47083857 47084150 -135331092 - AluSx SINE Alu -19 293 1 10162 209 53 29 chr6 47084150 47085142 -135330100 + L1MD2 LINE L1 4868 5986 -650 4544 151 17 5 chr6 47085146 47085913 -135329329 - L1MA9 LINE L1 -31 6281 5506 2296 217 45 35 chr6 47085916 47086238 -135329004 + L1MD2 LINE L1 5971 6303 -450 2152 110 3 3 chr6 47086238 47086547 -135328695 + AluSg SINE Alu 1 309 -1 2296 217 45 35 chr6 47086547 47086773 -135328469 + L1MD2 LINE L1 6303 6525 -228 316 196 43 54 chr6 47086752 47086802 -135328440 + L1MD3 LINE L1 8299 8349 -40 * 2081 144 73 52 chr6 47086802 47087225 -135328017 + MSTB1 LTR MaLR 1 432 0 316 196 43 54 chr6 47087225 47087266 -135327976 + L1MD3 LINE L1 8349 8389 0 1219 205 16 24 chr6 47087737 47087991 -135327251 + AluJo SINE Alu 1 252 -60 388 364 49 5 chr6 47088528 47088712 -135326530 + MIR SINE MIR 56 247 -15 2265 68 0 3 chr6 47089276 47089572 -135325670 + AluSx SINE Alu 1 295 -17 333 275 198 52 chr6 47089627 47089652 -135325590 + L2 LINE L2 2694 2714 -599 1221 176 107 8 chr6 47089652 47089914 -135325328 - AluJb SINE Alu -24 288 1 333 275 198 52 chr6 47089914 47089944 -135325298 + L2 LINE L2 2714 2738 -575 1723 122 16 36 chr6 47089944 47090248 -135324994 + AluSx SINE Alu 1 298 -14 333 275 198 52 chr6 47090248 47090708 -135324534 + L2 LINE L2 2738 3313 0 195 42 0 0 chr6 47090978 47091002 -135324240 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 330 26 0 0 chr6 47091001 47091040 -135324202 + (GA)n Simple_repeat Simple_repeat 2 40 0 213 39 0 0 chr6 47092002 47092028 -135323214 + (CA)n Simple_repeat Simple_repeat 2 27 0 475 343 73 4 chr6 47092318 47092551 -135322691 - MIR SINE MIR -6 256 8 323 305 99 0 chr6 47096265 47096406 -135318836 + MIR3 SINE MIR 36 190 -18 1874 211 53 51 chr6 47096554 47096850 -135318392 + L1ME3A LINE L1 5579 5878 -292 1345 158 147 4 chr6 47096850 47097123 -135318119 + AluJo SINE Alu 1 312 0 1874 211 53 51 chr6 47097123 47097396 -135317846 + L1ME3A LINE L1 5878 6149 -21 723 220 12 24 chr6 47097675 47097843 -135317399 + MIR SINE MIR 36 201 -61 1014 186 24 0 chr6 47097895 47098062 -135317180 - MLT1A1 LTR MaLR 0 365 195 455 181 12 12 chr6 47098179 47098262 -135316980 + MER20 DNA MER1_type 137 219 0 185 242 65 16 chr6 47098596 47098658 -135316584 - MIR SINE MIR -86 122 58 468 234 18 18 chr6 47098926 47099037 -135316205 - L2 LINE L2 -35 3278 3168 479 274 156 11 chr6 47099039 47099225 -135316017 - MIR SINE MIR -2 260 48 1422 199 39 161 chr6 47099229 47099579 -135315663 + L1M4 LINE L1 3940 4331 -1815 180 77 0 0 chr6 47099579 47099605 -135315637 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2042 124 3 0 chr6 47099612 47099903 -135315339 - AluSx SINE Alu -20 292 1 1422 199 39 161 chr6 47099903 47100005 -135315237 + L1M4 LINE L1 4337 4450 -1696 2146 162 22 6 chr6 47100005 47100364 -135314878 - MLT1A1 LTR MaLR 0 365 1 808 183 11 21 chr6 47100369 47100555 -135314687 + L1MB7 LINE L1 6001 6184 0 1422 199 39 161 chr6 47100555 47100875 -135314367 + L1M4 LINE L1 4454 4631 -1515 2142 114 0 0 chr6 47101856 47102163 -135313079 + AluSc SINE Alu 1 307 -2 2273 102 0 9 chr6 47102165 47102480 -135312762 + AluSx SINE Alu 1 312 0 202 211 0 0 chr6 47103068 47103106 -135312136 - L2 LINE L2 -94 3219 3182 322 182 0 91 chr6 47103486 47103569 -135311673 - LTR33 LTR ERVL 0 521 447 1666 190 125 8 chr6 47103569 47103969 -135311273 - MLT1C LTR MaLR -1 466 20 267 225 56 107 chr6 47103960 47104138 -135311104 - LTR33 LTR ERVL -52 469 301 * 226 225 67 67 chr6 47104232 47104321 -135310921 - LTR33 LTR ERVL -401 120 32 5591 124 16 1 chr6 47104661 47105494 -135309748 - L1MC1 LINE L1 0 6333 5489 1246 173 113 35 chr6 47105545 47105829 -135309413 - AluJo SINE Alu -6 306 1 364 219 0 2 chr6 47105871 47105954 -135309288 + Charlie8 DNA MER1_type 1346 2416 -1 267 296 126 33 chr6 47106250 47106391 -135308851 + MIR SINE MIR 20 178 -68 1132 277 85 8 chr6 47106436 47106812 -135308430 + L2 LINE L2 1781 2185 -1129 1065 236 79 18 chr6 47106813 47107093 -135308149 - MLT1C LTR MaLR 0 467 171 392 120 40 0 chr6 47107093 47107168 -135308074 + CT-rich Low_complexity Low_complexity 5 82 0 1428 195 0 18 chr6 47107168 47107440 -135307802 - AluJo SINE Alu -45 267 1 505 160 66 9 chr6 47107441 47107547 -135307695 - MLT1C LTR MaLR -282 185 74 1214 279 96 6 chr6 47107585 47108054 -135307188 + L2 LINE L2 2182 2692 -622 333 333 49 28 chr6 47108217 47108361 -135306881 - L2 LINE L2 0 3272 3126 1109 252 136 32 chr6 47109012 47109631 -135305611 + HAL1 LINE L1 589 1271 -1236 527 161 75 0 chr6 47109632 47109725 -135305517 + MLT1G LTR MaLR 1 100 -495 2171 104 3 0 chr6 47109769 47110068 -135305174 + AluSp SINE Alu 2 301 -12 544 258 50 62 chr6 47110196 47110436 -135304806 + MLT1G LTR MaLR 68 304 -286 315 278 201 24 chr6 47110469 47110638 -135304604 + MLT1G LTR MaLR 339 537 -5 466 237 112 12 chr6 47110642 47110811 -135304431 + HAL1 LINE L1 1277 1462 -1045 479 93 0 13 chr6 47110812 47110887 -135304355 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 183 80 0 0 chr6 47110890 47110915 -135304327 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 598 197 82 0 chr6 47111009 47111131 -135304111 + FLAM_C SINE Alu 1 132 -1 326 252 126 16 chr6 47111183 47111310 -135303932 - MLT1J2 LTR MaLR -57 393 253 863 202 62 25 chr6 47111310 47111553 -135303689 - Charlie4 DNA MER1_type -7 1954 1703 2102 124 0 0 chr6 47111635 47111933 -135303309 + AluSg SINE Alu 1 298 -12 1672 148 28 14 chr6 47112143 47112434 -135302808 - Charlie4 DNA MER1_type -1659 302 8 727 291 36 18 chr6 47112461 47112684 -135302558 - MLT1J2 LTR MaLR -217 233 7 328 186 30 14 chr6 47113897 47113983 -135301259 - MLT1I LTR MaLR -7 439 318 458 241 195 23 chr6 47114095 47114269 -135300973 - MLT1J2 LTR MaLR -242 208 5 542 243 29 53 chr6 47114275 47114846 -135300396 + HAL1 LINE L1 1572 2186 -321 489 235 151 78 chr6 47114897 47115255 -135299987 - MLT1I LTR MaLR 0 409 26 304 209 35 52 chr6 47115260 47115375 -135299867 + HAL1 LINE L1 2271 2383 -124 300 233 58 58 chr6 47115422 47115525 -135299717 + HAL1 LINE L1 2398 2500 -7 195 321 18 0 chr6 47115611 47115667 -135299575 - L3 LINE CR1 -1315 262 206 1926 148 0 3 chr6 47116613 47116911 -135298331 - AluJb SINE Alu -15 297 1 721 191 98 108 chr6 47116923 47117127 -135298115 + MIR SINE MIR 18 219 -43 591 203 8 8 chr6 47118584 47118702 -135296540 + MIR SINE MIR 30 147 -61 2262 171 70 128 chr6 47119105 47119707 -135295535 + MLT1F1 LTR MaLR 1 567 0 1878 123 7 42 chr6 47120224 47120534 -135294708 - AluSx SINE Alu -13 299 1 1817 173 0 3 chr6 47120611 47120912 -135294330 - AluJb SINE Alu -12 300 1 960 250 33 47 chr6 47120965 47121145 -135294097 - MLT1G LTR MaLR -6 589 408 495 266 109 31 chr6 47121145 47121337 -135293905 - MER63A DNA MER1_type -3 207 1 960 250 33 47 chr6 47121337 47121643 -135293599 - MLT1G LTR MaLR -187 408 1 180 306 24 0 chr6 47121705 47121790 -135293452 + MIR SINE MIR 54 140 -122 582 185 59 0 chr6 47121971 47122090 -135293152 + MER94 DNA DNA 6 131 -3 208 332 48 62 chr6 47122550 47122839 -135292403 + L2 LINE L2 2808 3092 -180 705 198 121 53 chr6 47122857 47123064 -135292178 + MIR SINE MIR 13 233 -29 2229 116 0 0 chr6 47123199 47123510 -135291732 + AluSx SINE Alu 1 311 -1 1660 179 62 48 chr6 47124740 47125098 -135290144 - MLT1A1 LTR MaLR -2 363 1 629 279 64 39 chr6 47125190 47125423 -135289819 + MIR SINE MIR 24 262 0 387 0 0 0 chr6 47127565 47127608 -135287634 + (TG)n Simple_repeat Simple_repeat 1 43 0 211 355 43 0 chr6 47129344 47129437 -135285805 - MIR SINE MIR -65 197 101 969 163 84 65 chr6 47129707 47129922 -135285320 - MER20 DNA MER1_type 0 219 1 234 353 39 45 chr6 47130067 47130223 -135285019 - L2 LINE L2 -130 3142 2988 2174 191 75 36 chr6 47130369 47130902 -135284340 + MER97a DNA MER1_type? 14 567 -327 578 167 0 0 chr6 47130971 47131067 -135284175 - AluY SINE Alu 0 311 216 312 283 91 22 chr6 47131137 47131341 -135283901 + MER97c DNA MER1_type? 835 1090 0 388 308 35 18 chr6 47131652 47131821 -135283421 - MIR3 SINE MIR -34 174 3 283 363 101 11 chr6 47131999 47132277 -135282965 - L2 LINE L2 0 3272 2970 238 316 11 11 chr6 47132589 47132684 -135282558 + CT-rich Low_complexity Low_complexity 3 97 0 248 200 0 0 chr6 47133563 47133608 -135281634 - MIR SINE MIR -61 147 103 384 298 44 18 chr6 47133650 47133764 -135281478 - L2 LINE L2 0 3313 3197 336 300 50 0 chr6 47133848 47133968 -135281274 + L2 LINE L2 3139 3264 -8 322 225 28 0 chr6 47134023 47134094 -135281148 - MIR SINE MIR -102 160 88 212 307 0 13 chr6 47134252 47134327 -135280915 + GA-rich Low_complexity Low_complexity 3 76 0 204 125 0 0 chr6 47134329 47134361 -135280881 - MIR SINE MIR -202 60 29 183 302 56 71 chr6 47134439 47134565 -135280677 - L3b LINE CR1 -185 1398 1275 426 264 52 0 chr6 47134886 47135033 -135280209 + MIR3 SINE MIR 37 194 -14 380 345 120 0 chr6 47135261 47135452 -135279790 - MIR SINE MIR -17 245 32 261 0 0 0 chr6 47135667 47135696 -135279546 + (TG)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr6 47135695 47135719 -135279523 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 227 217 0 0 chr6 47135814 47135860 -135279382 + (TAA)n Simple_repeat Simple_repeat 2 47 0 237 256 11 44 chr6 47136113 47136203 -135279039 + GA-rich Low_complexity Low_complexity 1 87 0 274 282 0 26 chr6 47136299 47136377 -135278865 + L2 LINE L2 2701 2776 -538 399 237 0 10 chr6 47136667 47136764 -135278478 - MIR SINE MIR -147 115 20 267 31 0 0 chr6 47137411 47137443 -135277799 + (TC)n Simple_repeat Simple_repeat 2 33 0 345 24 0 0 chr6 47137443 47137485 -135277757 + (CA)n Simple_repeat Simple_repeat 1 42 0 381 349 76 23 chr6 47137805 47138109 -135277133 + L2 LINE L2 2566 2885 -429 671 264 62 70 chr6 47138264 47138522 -135276720 - MIR SINE MIR -5 257 2 375 191 0 0 chr6 47138839 47138907 -135276335 - MIR SINE MIR -19 243 176 775 240 137 53 chr6 47138959 47139423 -135275819 + MLT1H LTR MaLR 1 588 -2 275 217 36 130 chr6 47139426 47139564 -135275678 - MIR SINE MIR -99 163 39 319 200 0 0 chr6 47139933 47139988 -135275254 + MIR3 SINE MIR 151 205 -3 727 278 23 56 chr6 47140256 47140327 -135274915 + MIR SINE MIR 2 74 -188 2301 90 0 0 chr6 47140327 47140627 -135274615 + AluSc SINE Alu 1 300 -9 727 278 23 56 chr6 47140627 47140821 -135274421 + MIR SINE MIR 74 258 -4 270 309 136 0 chr6 47141365 47141446 -135273796 + MIR SINE MIR 27 118 -144 1061 212 66 0 chr6 47142803 47143044 -135272198 - MIR SINE MIR -2 260 4 336 48 0 0 chr6 47143734 47143776 -135271466 + (CA)n Simple_repeat Simple_repeat 1 42 0 253 259 86 0 chr6 47144153 47144234 -135271008 + MIR3 SINE MIR 104 191 -17 309 270 67 79 chr6 47144611 47144789 -135270453 - MIR SINE MIR -65 197 22 317 62 21 0 chr6 47144848 47144896 -135270346 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 285 300 110 0 chr6 47145038 47145138 -135270104 - MIR3 SINE MIR -21 187 77 * 2384 239 107 12 chr6 47145121 47146055 -135269187 - L2 LINE L2 -2 3311 2257 231 114 0 0 chr6 47146219 47146254 -135268988 + (CCCTAG)n Simple_repeat Simple_repeat 1 35 0 266 306 130 0 chr6 47146686 47146794 -135268448 - MIR3 SINE MIR -52 156 35 368 293 28 2 chr6 47146842 47146987 -135268255 + MIR SINE MIR 30 177 -68 26 64 0 0 chr6 47147933 47147980 -135267262 + GC_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr6 47148230 47148258 -135266984 + GC_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 47148558 47148586 -135266656 + GC_rich Low_complexity Low_complexity 1 28 0 401 253 0 0 chr6 47149002 47149101 -135266141 - MIR3 SINE MIR -54 154 56 21 89 0 0 chr6 47149517 47149573 -135265669 + AT_rich Low_complexity Low_complexity 1 56 0 432 213 90 65 chr6 47149581 47149736 -135265506 - MIR SINE MIR -16 246 88 277 403 92 5 chr6 47150140 47150346 -135264896 + L3 LINE CR1 1352 1575 -2 2268 71 11 0 chr6 47151428 47151732 -135263510 + AluSp SINE Alu 1 307 0 333 47 0 0 chr6 47152281 47152324 -135262918 + (TC)n Simple_repeat Simple_repeat 1 43 0 450 273 137 16 chr6 47153007 47153190 -135262052 - MIR SINE MIR -38 224 20 2347 97 0 0 chr6 47153308 47153618 -135261624 - AluSq SINE Alu -1 312 3 2197 113 0 0 chr6 47153901 47154202 -135261040 + AluSx SINE Alu 1 301 -11 1257 104 16 6 chr6 47154224 47154407 -135260835 + AluY SINE Alu 20 204 -107 542 172 0 0 chr6 47154558 47154651 -135260591 + AluSg/x SINE Alu 217 309 -3 2179 112 0 0 chr6 47154692 47154988 -135260254 - AluSc SINE Alu -13 296 1 856 150 12 17 chr6 47154998 47155171 -135260071 - L1MC3 LINE L1 0 7785 7614 750 157 0 25 chr6 47155189 47155310 -135259932 - FLAM_C SINE Alu -24 119 2 1818 133 197 184 chr6 47155317 47155732 -135259510 - L1MC3 LINE L1 -169 7616 7208 250 288 25 51 chr6 47155732 47155850 -135259392 - MLT1F1 LTR MaLR -428 139 25 1818 133 197 184 chr6 47155850 47155887 -135259355 - L1MC3 LINE L1 -577 7208 7173 180 77 0 0 chr6 47155887 47155913 -135259329 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1818 133 197 184 chr6 47155913 47156244 -135258998 - L1MC3 LINE L1 -612 7173 6703 717 211 53 32 chr6 47156257 47156405 -135258837 + L1MC5 LINE L1 7659 7815 -146 2184 112 0 10 chr6 47156405 47156717 -135258525 + AluSg SINE Alu 1 309 -1 717 211 53 32 chr6 47156717 47156815 -135258427 + L1MC5 LINE L1 7815 7910 -51 243 0 0 0 chr6 47156817 47156844 -135258398 + (T)n Simple_repeat Simple_repeat 1 27 0 2470 30 0 7 chr6 47156969 47157271 -135257971 - AluY SINE Alu -11 300 1 2344 70 3 3 chr6 47157593 47157894 -135257348 - AluSp SINE Alu -12 301 1 259 333 34 34 chr6 47158009 47158156 -135257086 + MER5A DNA MER1_type 2 148 -41 * 284 302 26 26 chr6 47158041 47158157 -135257085 - MER5A DNA MER1_type -23 166 51 1203 167 132 27 chr6 47158248 47158532 -135256710 - AluJo SINE Alu 0 311 1 268 299 90 28 chr6 47158673 47158850 -135256392 - LTR33 LTR ERVL 0 521 334 310 214 227 71 chr6 47158934 47159088 -135256154 - LTR33 LTR ERVL -343 178 1 1887 276 34 6 chr6 47159315 47159812 -135255430 - MLT1J LTR MaLR 0 511 1 189 0 0 0 chr6 47160276 47160297 -135254945 + (TC)n Simple_repeat Simple_repeat 2 22 0 828 135 0 8 chr6 47160297 47160423 -135254819 - FLAM_C SINE Alu -13 130 6 217 321 239 3 chr6 47160425 47160743 -135254499 + L2 LINE L2 2153 2545 -769 2035 138 0 0 chr6 47160987 47161283 -135253959 - AluSx SINE Alu -16 296 1 402 214 58 10 chr6 47161894 47161997 -135253245 - MIR SINE MIR -122 140 33 364 288 38 8 chr6 47163231 47163363 -135251879 + MIR SINE MIR 21 156 -106 180 77 0 0 chr6 47164107 47164133 -135251109 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 1209 293 83 20 chr6 47165039 47165497 -135249745 - L2 LINE L2 -7 3306 2820 228 258 0 45 chr6 47165855 47165944 -135249298 + CT-rich Low_complexity Low_complexity 1 85 0 761 147 0 0 chr6 47166880 47166996 -135248246 - FLAM_A SINE Alu -3 139 24 2256 108 0 6 chr6 47167087 47167401 -135247841 + AluSq SINE Alu 2 313 0 1238 172 34 0 chr6 47167666 47167899 -135247343 + MIR SINE MIR 22 262 0 910 238 59 117 chr6 47167926 47168070 -135247172 + MLT1F LTR MaLR 1 152 -390 2291 90 0 0 chr6 47168070 47168369 -135246873 - AluY SINE Alu -12 299 1 910 238 59 117 chr6 47168369 47168787 -135246455 + MLT1F LTR MaLR 152 530 -12 197 233 0 67 chr6 47168791 47168851 -135246391 - MIR3 SINE MIR -6 202 147 * 1243 275 34 35 chr6 47168826 47169343 -135245899 + L2 LINE L2 2690 3211 -102 2220 101 10 3 chr6 47169343 47169650 -135245592 - AluSx SINE Alu -3 309 1 1243 275 34 35 chr6 47169650 47169752 -135245490 + L2 LINE L2 3211 3312 -1 232 288 25 12 chr6 47169764 47169844 -135245398 - MIR SINE MIR -72 136 56 220 286 159 32 chr6 47170524 47170650 -135244592 - L2 LINE L2 -7 3265 3124 676 291 57 20 chr6 47170680 47170927 -135244315 + MIR SINE MIR 6 261 -1 279 193 18 0 chr6 47171020 47171077 -135244165 + MER81 DNA DNA 56 113 -1 382 314 46 0 chr6 47171174 47171327 -135243915 + MIR3 SINE MIR 27 186 -22 249 83 0 0 chr6 47171426 47171462 -135243780 + (CA)n Simple_repeat Simple_repeat 1 36 0 266 244 33 11 chr6 47172864 47172954 -135242288 - MIR SINE MIR -85 177 86 2296 100 17 0 chr6 47173213 47173514 -135241728 - AluSq SINE Alu -7 306 1 235 311 0 0 chr6 47173546 47173607 -135241635 - L2 LINE L2 0 3313 3253 356 306 156 21 chr6 47174267 47174453 -135240789 + L2 LINE L2 3103 3313 0 459 154 31 62 chr6 47174571 47174937 -135240305 + (TG)n Simple_repeat Simple_repeat 1 354 0 488 181 22 55 chr6 47175004 47175186 -135240056 + (TG)n Simple_repeat Simple_repeat 2 177 0 431 231 26 19 chr6 47175210 47175366 -135239876 + (TG)n Simple_repeat Simple_repeat 1 157 0 423 235 111 12 chr6 47175719 47175887 -135239355 - MIR SINE MIR -22 240 40 1868 189 56 20 chr6 47176125 47176501 -135238741 + MLT1C LTR MaLR 6 402 -65 454 286 96 52 chr6 47176501 47176927 -135238315 + MER65A LTR ERV1 1 445 0 1868 189 56 20 chr6 47176927 47176995 -135238247 + MLT1C LTR MaLR 402 466 -1 441 0 0 0 chr6 47177016 47177065 -135238177 + (CA)n Simple_repeat Simple_repeat 2 50 0 360 164 0 0 chr6 47177343 47177410 -135237832 + CT-rich Low_complexity Low_complexity 1 67 0 225 214 0 0 chr6 47178155 47178197 -135237045 - L2 LINE L2 -93 3179 3138 224 158 0 0 chr6 47178308 47178346 -135236896 - MIR SINE MIR -57 205 168 1136 109 23 23 chr6 47178348 47178522 -135236720 + AluSg/x SINE Alu 135 308 -2 245 288 200 16 chr6 47178540 47178665 -135236577 - MIR SINE MIR -114 148 1 294 311 44 7 chr6 47179041 47179176 -135236066 + L2 LINE L2 2596 2735 -579 502 188 94 43 chr6 47179353 47179491 -135235751 - L2 LINE L2 -2 3311 3167 1555 161 79 0 chr6 47179493 47179798 -135235444 - MER2 DNA MER2_type -1 344 16 641 239 102 0 chr6 47179851 47180027 -135235215 - L2 LINE L2 -489 2825 2632 2232 103 3 26 chr6 47180065 47180375 -135234867 + AluSx SINE Alu 1 303 -9 198 167 0 0 chr6 47181373 47181409 -135233833 + (TAA)n Simple_repeat Simple_repeat 3 38 0 670 258 6 12 chr6 47181411 47181578 -135233664 - MIR SINE MIR 0 262 97 204 224 0 20 chr6 47183905 47183954 -135231288 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 256 256 112 17 chr6 47184309 47184441 -135230801 + MIR SINE MIR 39 179 -63 182 128 26 0 chr6 47184587 47184626 -135230616 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 185 264 93 50 chr6 47185124 47185264 -135229978 + L2 LINE L2 2048 2193 -1121 2344 90 0 3 chr6 47185462 47185750 -135229492 + AluSc SINE Alu 1 287 -22 930 109 45 58 chr6 47185757 47185913 -135229329 - AluJo SINE Alu -36 276 123 1771 85 0 0 chr6 47186813 47187024 -135228218 + AluSp SINE Alu 1 211 -102 606 252 14 11 chr6 47187046 47187326 -135227916 + GA-rich Low_complexity Low_complexity 1 281 0 222 118 0 0 chr6 47188127 47188161 -135227081 + (A)n Simple_repeat Simple_repeat 1 34 0 270 176 0 0 chr6 47190734 47190785 -135224457 + (TG)n Simple_repeat Simple_repeat 1 51 0 220 163 20 41 chr6 47191326 47191375 -135223867 + G-rich Low_complexity Low_complexity 2 49 0 210 118 0 0 chr6 47192109 47192143 -135223099 + (ATTG)n Simple_repeat Simple_repeat 1 34 0 224 299 112 22 chr6 47192779 47192913 -135222329 + L2 LINE L2 2752 2897 -417 * 391 278 30 15 chr6 47192909 47193042 -135222200 + L2 LINE L2 3179 3313 0 336 77 0 0 chr6 47193753 47193805 -135221437 + (TG)n Simple_repeat Simple_repeat 2 53 0 2074 126 10 13 chr6 47194304 47194614 -135220628 + AluJo SINE Alu 1 309 -3 1550 175 45 14 chr6 47194814 47195100 -135220142 - AluJo SINE Alu -17 295 1 187 206 14 96 chr6 47195137 47195210 -135220032 + MIR SINE MIR 47 113 -95 256 169 0 68 chr6 47195583 47195642 -135219600 - L2 LINE L2 0 3272 3218 207 139 0 0 chr6 47196006 47196042 -135219200 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 223 410 0 15 chr6 47196192 47196326 -135218916 - L2 LINE L2 -172 3100 2969 458 267 46 36 chr6 47196953 47197148 -135218094 - MIR SINE MIR -46 216 20 2336 218 34 11 chr6 47197353 47197921 -135217321 - L1ME2 LINE L1 -9 6155 5575 1327 189 0 4 chr6 47197921 47198149 -135217093 - AluJo SINE Alu 0 312 86 741 229 0 0 chr6 47198149 47198302 -135216940 - L1ME2 LINE L1 -578 5586 5434 808 233 125 70 chr6 47198314 47198484 -135216758 + LTR33A LTR ERVL 12 171 -352 2117 113 11 0 chr6 47198484 47198768 -135216474 + AluSx SINE Alu 5 291 -21 808 233 125 70 chr6 47198768 47199014 -135216228 + LTR33A LTR ERVL 171 451 -72 507 284 102 17 chr6 47199014 47199250 -135215992 + L2 LINE L2 2924 3179 -134 1178 163 0 0 chr6 47199251 47199441 -135215801 + Tigger1 DNA MER2_type 1 190 -2228 1749 96 9 4 chr6 47199442 47199671 -135215571 + AluSg/x SINE Alu 66 295 -17 646 182 0 9 chr6 47199676 47199786 -135215456 - FLAM_A SINE Alu -26 116 8 12712 104 49 71 chr6 47199793 47200219 -135215023 + Tigger1 DNA MER2_type 174 608 -1810 2398 95 0 7 chr6 47200219 47200525 -135214717 + AluSg SINE Alu 1 304 -6 12712 104 49 71 chr6 47200525 47200691 -135214551 + Tigger1 DNA MER2_type 608 776 -1642 2643 61 0 0 chr6 47200691 47201001 -135214241 + AluY SINE Alu 1 310 -1 12712 104 49 71 chr6 47201001 47201181 -135214061 + Tigger1 DNA MER2_type 776 959 -1459 2393 92 0 13 chr6 47201181 47201496 -135213746 - AluY SINE Alu 0 311 1 12712 104 49 71 chr6 47201496 47202202 -135213040 + Tigger1 DNA MER2_type 959 1679 -739 2540 87 0 0 chr6 47202202 47202511 -135212731 + AluY SINE Alu 1 309 -2 12712 104 49 71 chr6 47202511 47203326 -135211916 + Tigger1 DNA MER2_type 1679 2418 0 402 246 71 24 chr6 47203341 47203467 -135211775 + L2 LINE L2 3182 3313 0 1026 260 15 9 chr6 47203848 47204175 -135211067 + L1ME3A LINE L1 4946 5274 -872 990 204 0 0 chr6 47204230 47204406 -135210836 + FRAM SINE Alu 1 169 -7 2436 207 78 81 chr6 47204429 47204986 -135210256 + L1ME3A LINE L1 5297 5854 -316 816 126 24 0 chr6 47204986 47205113 -135210129 + FLAM_A SINE Alu 2 131 -2 2436 207 78 81 chr6 47205113 47205211 -135210031 + L1ME3A LINE L1 5854 5951 -219 770 136 0 0 chr6 47205211 47205329 -135209913 + FLAM_C SINE Alu 1 118 -15 281 26 0 26 chr6 47205332 47205371 -135209871 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 2436 207 78 81 chr6 47205371 47205578 -135209664 + L1ME3A LINE L1 5953 6162 -8 185 268 165 21 chr6 47205793 47205890 -135209352 + MIR3 SINE MIR 15 125 -83 218 339 93 63 chr6 47206388 47206689 -135208553 + L2 LINE L2 2962 3271 -1 714 236 57 0 chr6 47206970 47207127 -135208115 - MIR SINE MIR -62 200 35 246 32 0 0 chr6 47207314 47207345 -135207897 + (TG)n Simple_repeat Simple_repeat 1 31 0 259 316 66 20 chr6 47207780 47207932 -135207310 - MIR SINE MIR 0 262 104 262 215 108 21 chr6 47207954 47208047 -135207195 + L2 LINE L2 3154 3254 -18 350 273 173 13 chr6 47208104 47208254 -135206988 + MIR SINE MIR 89 262 0 219 299 153 22 chr6 47208343 47208480 -135206762 - MIR3 SINE MIR -41 167 13 266 235 0 35 chr6 47209453 47209538 -135205704 + GA-rich Low_complexity Low_complexity 1 82 0 364 286 9 0 chr6 47209981 47210093 -135205149 + (CA)n Simple_repeat Simple_repeat 2 114 0 880 161 0 0 chr6 47210638 47210762 -135204480 - FLAM_C SINE Alu -19 124 1 401 294 123 38 chr6 47210882 47211093 -135204149 - MIR SINE MIR 0 262 34 490 276 104 0 chr6 47211130 47211293 -135203949 - MIR3 SINE MIR -6 202 23 423 0 0 0 chr6 47211424 47211471 -135203771 + (TATTG)n Simple_repeat Simple_repeat 2 48 0 2369 84 7 0 chr6 47211471 47211757 -135203485 - AluSq SINE Alu -25 288 1 1407 268 106 20 chr6 47211994 47212599 -135202643 - L2 LINE L2 -337 2977 2321 677 173 12 48 chr6 47212621 47212789 -135202453 - MER96B DNA MER1_type? -217 200 39 892 219 77 5 chr6 47213737 47213933 -135201309 - MER63A DNA MER1_type 0 210 1 246 301 21 11 chr6 47214180 47214273 -135200969 + MIR SINE MIR 169 262 0 * 503 304 85 13 chr6 47214243 47214467 -135200775 - MIR SINE MIR -1 261 22 204 347 16 8 chr6 47215004 47215128 -135200114 + CT-rich Low_complexity Low_complexity 2 126 0 270 235 0 12 chr6 47215157 47215242 -135200000 + (TCTG)n Simple_repeat Simple_repeat 3 86 0 291 54 0 0 chr6 47215268 47215305 -135199937 + (TG)n Simple_repeat Simple_repeat 2 38 0 507 239 22 90 chr6 47216166 47216272 -135198970 + MIR SINE MIR 49 135 -127 2178 106 0 3 chr6 47216272 47216582 -135198660 + AluSx SINE Alu 1 309 0 507 239 22 90 chr6 47216582 47216696 -135198546 + MIR SINE MIR 135 255 -7 309 382 49 0 chr6 47216747 47216891 -135198351 - L2 LINE L2 0 3272 3122 524 333 42 17 chr6 47217217 47217454 -135197788 - MIR SINE MIR 0 262 20 21 36 0 0 chr6 47217668 47217696 -135197546 + AT_rich Low_complexity Low_complexity 1 28 0 402 255 67 82 chr6 47217838 47218046 -135197196 + MLT1K LTR MaLR 43 247 -341 322 268 0 12 chr6 47218429 47218511 -135196731 + MLT1K LTR MaLR 483 563 -25 952 196 173 0 chr6 47218998 47219212 -135196030 + MIR SINE MIR 12 262 0 278 361 35 35 chr6 47219205 47219374 -135195868 + L2 LINE L2 3104 3272 0 * 420 225 26 20 chr6 47219638 47219759 -135195483 - MIR SINE MIR -63 145 38 202 217 22 0 chr6 47220262 47220308 -135194934 + L2 LINE L2 3216 3262 -10 2398 97 7 3 chr6 47220869 47221179 -135194063 + AluSx SINE Alu 1 311 -1 190 0 0 0 chr6 47221179 47221200 -135194042 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 440 325 14 0 chr6 47221301 47221462 -135193780 - MIR3 SINE MIR -12 196 33 224 247 164 0 chr6 47221682 47221755 -135193487 - L2 LINE L2 0 3272 3188 431 262 148 7 chr6 47221878 47222027 -135193215 - MIR SINE MIR -92 170 1 2315 83 0 3 chr6 47222099 47222399 -135192843 - AluSg1 SINE Alu -10 299 1 460 264 149 0 chr6 47222455 47222629 -135192613 + L2 LINE L2 3069 3268 -4 22 115 0 0 chr6 47224453 47224566 -135190676 + GC_rich Low_complexity Low_complexity 1 113 0 245 243 45 51 chr6 47225383 47225560 -135189682 + (TCTCTG)n Simple_repeat Simple_repeat 3 178 0 221 160 0 20 chr6 47225604 47225654 -135189588 + CT-rich Low_complexity Low_complexity 3 51 0 27 0 0 0 chr6 47225868 47225895 -135189347 + GC_rich Low_complexity Low_complexity 1 27 0 296 238 9 57 chr6 47226341 47226446 -135188796 - MIR SINE MIR -77 131 32 419 279 112 17 chr6 47226553 47226732 -135188510 - L2 LINE L2 0 3313 3118 * 625 340 52 9 chr6 47226727 47226959 -135188283 - MIR SINE MIR 0 262 21 203 298 130 23 chr6 47227090 47227221 -135188021 - MIR SINE MIR -1 261 117 325 220 138 9 chr6 47227555 47227664 -135187578 + MIR3 SINE MIR 37 159 -49 549 30 0 0 chr6 47227773 47227840 -135187402 + (TA)n Simple_repeat Simple_repeat 2 68 0 2000 112 3 0 chr6 47227840 47228122 -135187120 - AluSx SINE Alu -29 283 1 435 38 0 0 chr6 47228555 47228608 -135186634 + (CAT)n Simple_repeat Simple_repeat 1 53 0 209 337 82 20 chr6 47228699 47228797 -135186445 - MIR SINE MIR -62 146 43 751 240 48 35 chr6 47229169 47229398 -135185844 + LTR16C LTR ERVL 260 491 0 294 95 0 0 chr6 47229414 47229456 -135185786 + (CA)n Simple_repeat Simple_repeat 1 42 0 391 311 57 40 chr6 47229515 47229743 -135185499 - MIR SINE MIR 0 262 31 199 200 18 18 chr6 47229818 47229873 -135185369 - L2 LINE L2 -222 3050 2996 207 0 0 0 chr6 47230599 47230622 -135184620 + (TG)n Simple_repeat Simple_repeat 1 23 0 358 282 81 0 chr6 47231453 47231577 -135183665 - MIR3 SINE MIR -48 160 27 279 54 0 0 chr6 47231952 47231989 -135183253 + (TTGG)n Simple_repeat Simple_repeat 1 37 0 387 291 99 29 chr6 47232192 47232364 -135182878 + MIR SINE MIR 11 194 -68 351 273 121 15 chr6 47232823 47232955 -135182287 - MIR SINE MIR -101 161 16 1192 211 90 56 chr6 47233226 47233549 -135181693 - MER115 DNA AcHobo -32 661 328 433 287 161 21 chr6 47233803 47234089 -135181153 + L2 LINE L2 2458 2783 -531 934 258 181 40 chr6 47234233 47234571 -135180671 + L2 LINE L2 2380 2669 -644 2310 75 3 0 chr6 47234571 47234866 -135180376 + AluSp SINE Alu 1 296 -17 934 258 181 40 chr6 47234866 47235347 -135179895 + L2 LINE L2 2669 3309 -4 237 296 92 28 chr6 47235348 47235490 -135179752 + L2 LINE L2 3162 3312 -1 1855 167 0 0 chr6 47235710 47236004 -135179238 + AluJb SINE Alu 1 294 -18 492 38 38 0 chr6 47236004 47236083 -135179159 + (TA)n Simple_repeat Simple_repeat 2 83 0 2475 53 0 3 chr6 47236100 47236401 -135178841 + AluY SINE Alu 1 300 -11 204 323 58 19 chr6 47237453 47237608 -135177634 - L2 LINE L2 -174 3098 2938 231 363 0 16 chr6 47239263 47239375 -135175867 + MIR3 SINE MIR 79 154 -54 510 306 65 0 chr6 47239398 47239568 -135175674 + MIR SINE MIR 43 223 -39 372 238 95 0 chr6 47239597 47239702 -135175540 - MER104 DNA Tc2 0 180 66 219 277 92 0 chr6 47239765 47239830 -135175412 + MER5B DNA MER1_type 34 104 -74 491 214 103 14 chr6 47239839 47239984 -135175258 + MIR SINE MIR 105 262 0 297 0 0 0 chr6 47240888 47240921 -135174321 + (CA)n Simple_repeat Simple_repeat 2 34 0 228 228 98 43 chr6 47240999 47241091 -135174151 + MIR SINE MIR 77 173 -89 653 273 93 36 chr6 47241107 47241385 -135173857 - L2 LINE L2 -6 3307 3014 527 292 39 18 chr6 47241737 47241904 -135173338 + MIR SINE MIR 30 207 -55 2097 127 3 3 chr6 47241904 47242212 -135173030 + AluSx SINE Alu 1 308 -4 527 292 39 18 chr6 47242212 47242262 -135172980 + MIR SINE MIR 207 254 -8 471 318 55 99 chr6 47242355 47242615 -135172627 + L3 LINE CR1 1224 1465 -112 2304 109 0 0 chr6 47242615 47242928 -135172314 - AluSq SINE Alu 0 313 1 471 318 55 99 chr6 47242928 47243032 -135172210 + L3 LINE CR1 1465 1572 -5 183 313 30 30 chr6 47244139 47244206 -135171036 - L2 LINE L2 0 3272 3206 224 79 53 0 chr6 47244890 47244928 -135170314 + G-rich Low_complexity Low_complexity 5 44 0 307 269 19 19 chr6 47244963 47245067 -135170175 + GA-rich Low_complexity Low_complexity 1 104 0 264 130 0 0 chr6 47245160 47245206 -135170036 + (TC)n Simple_repeat Simple_repeat 2 47 0 248 312 101 22 chr6 47245790 47245928 -135169314 - L2 LINE L2 -8 3264 3116 419 313 27 24 chr6 47245943 47246240 -135169002 + L1ME4a LINE L1 5676 5973 -148 267 237 0 0 chr6 47246250 47246343 -135168899 + (TG)n Simple_repeat Simple_repeat 2 94 0 509 168 58 52 chr6 47246357 47246453 -135168789 + L1ME4a LINE L1 5966 6065 -56 2240 107 3 0 chr6 47246453 47246762 -135168480 - AluSg SINE Alu 0 310 1 509 168 58 52 chr6 47246762 47246820 -135168422 + L1ME4a LINE L1 6065 6121 0 501 272 51 19 chr6 47247326 47247484 -135167758 - MIR SINE MIR -79 183 21 607 294 98 10 chr6 47247957 47248161 -135167081 - MIR SINE MIR -34 228 7 344 248 0 28 chr6 47248595 47248704 -135166538 + C-rich Low_complexity Low_complexity 2 107 0 315 330 0 0 chr6 47249464 47249552 -135165690 + MIR SINE MIR 56 143 -65 508 263 92 7 chr6 47250346 47250498 -135164744 + MIR SINE MIR 78 242 -20 1108 132 0 28 chr6 47250670 47250852 -135164390 + FRAM SINE Alu 1 176 0 186 133 0 0 chr6 47250899 47250929 -135164313 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 364 310 45 13 chr6 47251098 47251253 -135163989 + MER5A DNA MER1_type 28 187 -2 1793 200 142 7 chr6 47253288 47253698 -135161544 + MLT1C LTR MaLR 1 465 -2 2265 92 0 7 chr6 47253773 47254077 -135161165 + AluSx SINE Alu 1 302 -10 1641 155 46 36 chr6 47254488 47254693 -135160549 - AluJo SINE Alu -6 306 96 1916 125 3 47 chr6 47254693 47255012 -135160230 + AluSx SINE Alu 1 305 -7 1641 155 46 36 chr6 47255012 47255109 -135160133 - AluJo SINE Alu -216 96 1 306 246 40 63 chr6 47255418 47255544 -135159698 + MIR SINE MIR 80 202 -60 1613 168 64 15 chr6 47255665 47255993 -135159249 + MER58D DNA MER1_type 1 344 -42 673 260 53 0 chr6 47256007 47256157 -135159085 - MER58A DNA MER1_type 0 158 1 491 249 60 38 chr6 47256317 47256502 -135158740 + MLT1K LTR MaLR 376 564 -24 369 325 86 12 chr6 47256518 47256681 -135158561 - L2 LINE L2 -189 3083 2909 807 175 0 0 chr6 47256843 47256969 -135158273 - AluSq/x SINE Alu -187 126 1 535 316 143 34 chr6 47256998 47257590 -135157652 - L2 LINE L2 -619 2695 2030 1486 249 95 11 chr6 47257590 47258043 -135157199 + LTR16C LTR ERVL 1 491 0 535 316 143 34 chr6 47258043 47258073 -135157169 - L2 LINE L2 -1284 2030 2005 892 157 7 0 chr6 47258251 47258398 -135156844 + FRAM SINE Alu 23 170 -6 357 308 23 15 chr6 47258819 47258952 -135156290 + MIR SINE MIR 30 163 -99 1463 278 58 2 chr6 47258952 47259351 -135155891 - LTR16C LTR ERVL 0 491 71 228 306 14 0 chr6 47259408 47259480 -135155762 + MIR SINE MIR 161 233 -29 185 295 205 0 chr6 47259870 47259948 -135155294 + MIR SINE MIR 166 259 -3 287 339 108 8 chr6 47260737 47260867 -135154375 - MIR SINE MIR -79 183 41 1395 189 77 3 chr6 47260912 47261197 -135154045 + AluJo SINE Alu 1 306 -6 200 260 0 27 chr6 47261998 47262071 -135153171 + GA-rich Low_complexity Low_complexity 1 71 0 1307 260 94 20 chr6 47262562 47263008 -135152234 - L1ME3A LINE L1 -53 6117 5639 180 0 0 0 chr6 47263008 47263028 -135152214 + (GAGTG)n Simple_repeat Simple_repeat 2 21 0 2291 87 3 13 chr6 47263053 47263363 -135151879 - AluSp SINE Alu -6 307 1 1992 151 0 0 chr6 47263551 47263862 -135151380 + AluSx SINE Alu 1 311 -1 338 256 12 0 chr6 47264047 47264129 -135151113 + MIR SINE MIR 41 123 -85 404 244 35 17 chr6 47264404 47264519 -135150723 - MIR SINE MIR -131 131 15 705 179 14 21 chr6 47265383 47265523 -135149719 + MIR SINE MIR 52 190 -72 197 105 0 26 chr6 47267044 47267082 -135148160 + (CCCCCT)n Simple_repeat Simple_repeat 4 40 0 22 0 0 0 chr6 47267082 47267104 -135148138 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 47267180 47267203 -135148039 + GC_rich Low_complexity Low_complexity 1 23 0 225 245 0 59 chr6 47267232 47267334 -135147908 + G-rich Low_complexity Low_complexity 5 100 0 32 98 0 0 chr6 47267423 47267525 -135147717 + GC_rich Low_complexity Low_complexity 1 102 0 189 0 0 0 chr6 47269340 47269361 -135145881 + (T)n Simple_repeat Simple_repeat 1 21 0 205 256 12 81 chr6 47270100 47270186 -135145056 - L2 LINE L2 0 3313 3234 512 288 0 4 chr6 47270943 47271076 -135144166 - MIR SINE MIR -62 146 32 317 289 0 48 chr6 47273391 47273495 -135141747 + MIR3 SINE MIR 57 155 -53 400 255 20 74 chr6 47274567 47274716 -135140526 - MIR SINE MIR -38 224 84 508 242 214 0 chr6 47274825 47275007 -135140235 + MER102b DNA MER1_type 113 333 -8 2246 104 0 0 chr6 47275093 47275390 -135139852 + AluSx SINE Alu 1 297 -15 1855 107 28 21 chr6 47275490 47275780 -135139462 + AluJb SINE Alu 5 296 -16 291 273 30 53 chr6 47276641 47276773 -135138469 + MIR SINE MIR 17 145 -63 2377 71 0 3 chr6 47276841 47277138 -135138104 - AluY SINE Alu -14 297 2 250 152 0 0 chr6 47277198 47277244 -135137998 + L2 LINE L2 3008 3053 -219 582 229 17 74 chr6 47277322 47277497 -135137745 - MER5B DNA MER1_type 0 178 14 645 271 115 52 chr6 47277822 47278361 -135136881 + L1ME4a LINE L1 5548 6120 -1 413 284 13 39 chr6 47278970 47279125 -135136117 - MIR SINE MIR -43 219 69 323 315 163 44 chr6 47279549 47279892 -135135350 + L2 LINE L2 2930 3313 0 780 189 37 12 chr6 47280304 47280468 -135134774 + MER5A DNA MER1_type 22 189 0 183 242 242 11 chr6 47280564 47280659 -135134583 - MIR3 SINE MIR -6 202 86 735 136 0 0 chr6 47280666 47280776 -135134466 + FLAM_C SINE Alu 1 110 -33 277 248 226 36 chr6 47281912 47282049 -135133193 - MIR3 SINE MIR -34 174 12 281 233 14 14 chr6 47284113 47284186 -135131056 + MIR3 SINE MIR 82 154 -54 637 249 28 21 chr6 47284281 47284495 -135130747 - MER8 DNA MER2_type -3 342 6 1598 139 132 0 chr6 47284688 47284954 -135130288 + AluSx SINE Alu 2 302 -10 22 0 0 0 chr6 47284954 47284976 -135130266 + AT_rich Low_complexity Low_complexity 1 22 0 290 258 79 11 chr6 47285137 47285226 -135130016 + MIR SINE MIR 89 183 -79 184 345 92 0 chr6 47285302 47285389 -135129853 + L2 LINE L2 3192 3286 -27 2020 113 0 24 chr6 47285586 47285900 -135129342 + AluSx SINE Alu 1 307 0 294 289 64 58 chr6 47287603 47287759 -135127483 + MIR3 SINE MIR 5 161 -47 244 301 71 44 chr6 47288771 47288884 -135126358 - MIR SINE MIR -44 218 103 182 255 21 0 chr6 47289002 47289049 -135126193 + L2 LINE L2 3225 3272 0 348 24 0 0 chr6 47290595 47290636 -135124606 + (CA)n Simple_repeat Simple_repeat 2 42 0 293 340 223 0 chr6 47292533 47292812 -135122430 + L2 LINE L2 2714 3058 -255 180 0 0 0 chr6 47292821 47292841 -135122401 + (CAGC)n Simple_repeat Simple_repeat 2 21 0 193 239 196 101 chr6 47292870 47293008 -135122234 + L2 LINE L2 3159 3309 -4 246 294 165 28 chr6 47293347 47293456 -135121786 + MIR3 SINE MIR 45 168 -40 342 206 0 0 chr6 47293462 47293530 -135121712 + MER112 DNA MER1_type 193 260 0 631 332 58 4 chr6 47294144 47294370 -135120872 - MIR SINE MIR -1 261 24 366 234 184 32 chr6 47294832 47294990 -135120252 + MIR SINE MIR 63 244 -18 439 257 77 127 chr6 47295299 47295462 -135119780 + L2 LINE L2 2971 3115 -157 2100 106 0 0 chr6 47295462 47295783 -135119459 - AluY SINE Alu 0 321 1 439 257 77 127 chr6 47295783 47295918 -135119324 + L2 LINE L2 3115 3255 -17 530 259 74 0 chr6 47297220 47297355 -135117887 - MIR SINE MIR -71 191 47 886 259 67 6 chr6 47297930 47298172 -135117070 + MIR SINE MIR 5 259 -3 195 69 0 0 chr6 47300283 47300312 -135114930 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 883 193 94 14 chr6 47300340 47300552 -135114690 - MIR SINE MIR -2 260 32 1931 82 12 103 chr6 47300560 47300891 -135114351 - AluSp SINE Alu -12 301 1 239 396 49 14 chr6 47302378 47302522 -135112720 - L3b LINE CR1 -125 1458 1310 676 201 6 61 chr6 47302733 47302897 -135112345 + MIR SINE MIR 93 247 -15 245 348 87 0 chr6 47304090 47304205 -135111037 - L2 LINE L2 -16 3297 3173 433 323 37 26 chr6 47304426 47304615 -135110627 - MIR3 SINE MIR -7 201 11 745 255 72 10 chr6 47304977 47305185 -135110057 - MIR SINE MIR -1 261 41 240 143 0 0 chr6 47307292 47307334 -135107908 + (CGTG)n Simple_repeat Simple_repeat 2 43 0 863 165 160 5 chr6 47309513 47309707 -135105535 - MIR SINE MIR -2 260 37 336 317 81 12 chr6 47315901 47316062 -135099180 - MIR3 SINE MIR -35 173 2 2007 153 0 3 chr6 47316070 47316419 -135098823 - AluSq SINE Alu 0 348 1 2157 113 0 0 chr6 47316421 47316713 -135098529 - AluSx SINE Alu -20 292 1 380 280 13 39 chr6 47318594 47318723 -135096519 + CT-rich Low_complexity Low_complexity 1 132 -362 2092 132 0 3 chr6 47318723 47319033 -135096209 - AluSx SINE Alu -3 309 1 380 280 13 39 chr6 47319033 47319102 -135096140 + CT-rich Low_complexity Low_complexity 132 494 0 236 247 0 24 chr6 47320343 47320428 -135094814 + C-rich Low_complexity Low_complexity 3 85 0 2337 85 0 10 chr6 47321984 47322291 -135092951 - AluSp SINE Alu -9 304 1 201 359 47 9 chr6 47323098 47323204 -135092038 - L3b LINE CR1 -186 1397 1288 642 162 81 27 chr6 47323883 47324031 -135091211 - MIR SINE MIR 0 262 107 725 245 55 4 chr6 47325062 47325236 -135090006 + MIR SINE MIR 35 223 -39 2738 26 0 0 chr6 47325236 47325549 -135089693 + AluYb8 SINE Alu 1 313 -5 725 245 55 4 chr6 47325549 47325590 -135089652 + MIR SINE MIR 223 260 -2 2486 47 0 0 chr6 47325872 47326171 -135089071 + AluY SINE Alu 1 299 -12 249 294 24 0 chr6 47326951 47327036 -135088206 + L1MC4a LINE L1 5740 5826 -344 330 295 10 83 chr6 47327067 47327260 -135087982 + L1MC4a LINE L1 5872 6050 -1758 246 302 31 0 chr6 47327290 47327386 -135087856 + L1MC5 LINE L1 7833 7931 -30 1824 108 45 0 chr6 47327393 47327751 -135087491 + AluSx SINE Alu 1 370 0 194 328 35 55 chr6 47328066 47328175 -135087067 - L2 LINE L2 -1366 1948 1843 2286 116 18 18 chr6 47328175 47328512 -135086730 - MER1B DNA MER1_type 0 337 1 194 328 35 55 chr6 47328512 47328603 -135086639 - L2 LINE L2 -1471 1843 1752 1573 127 131 28 chr6 47328725 47329008 -135086234 + AluSx SINE Alu 1 312 0 237 383 9 17 chr6 47329727 47329842 -135085400 - L2 LINE L2 -3 3310 3197 1277 100 20 45 chr6 47329874 47330074 -135085168 + AluSq SINE Alu 3 197 -116 29 0 0 0 chr6 47330101 47330130 -135085112 + AT_rich Low_complexity Low_complexity 1 29 0 287 336 47 0 chr6 47330383 47330490 -135084752 - L2 LINE L2 -2 3270 3159 285 330 107 52 chr6 47330770 47330883 -135084359 - L2 LINE L2 -463 2851 2746 2104 113 0 3 chr6 47330883 47331218 -135084024 + AluSx SINE Alu 1 312 0 285 330 107 52 chr6 47331218 47331620 -135083622 - L2 LINE L2 -568 2746 2308 1141 235 90 101 chr6 47331633 47331921 -135083321 + HAL1 LINE L1 11 301 -2206 2218 121 0 0 chr6 47331921 47332226 -135083016 + AluSx SINE Alu 1 305 -7 2116 151 49 0 chr6 47332234 47332599 -135082643 + L1MC1 LINE L1 5938 6320 -13 2187 101 0 0 chr6 47332603 47332889 -135082353 - AluSx SINE Alu -22 290 5 1141 235 90 101 chr6 47332889 47333130 -135082112 + HAL1 LINE L1 311 548 -1959 2716 258 179 30 chr6 47333162 47333435 -135081807 + HAL1 LINE L1 766 997 -1510 2825 13 0 0 chr6 47333435 47333752 -135081490 + AluYb8 SINE Alu 1 317 -1 2716 258 179 30 chr6 47333752 47334957 -135080285 + HAL1 LINE L1 997 2465 -42 305 324 103 0 chr6 47334983 47335128 -135080114 + L2 LINE L2 3109 3268 -4 * 409 221 74 33 chr6 47335124 47335246 -135079996 - MIR3 SINE MIR -8 200 74 233 276 52 0 chr6 47336287 47336345 -135078897 + MIR SINE MIR 107 167 -95 856 141 0 0 chr6 47336345 47336487 -135078755 + L1MA5 LINE L1 6159 6300 0 33 25 0 0 chr6 47336653 47336693 -135078549 + AT_rich Low_complexity Low_complexity 1 40 0 6308 35 21 8 chr6 47336819 47337585 -135077657 + SVA Other Other 609 1384 -2 1909 134 10 10 chr6 47337589 47337898 -135077344 + AluSx SINE Alu 1 312 0 2309 88 0 0 chr6 47338124 47338432 -135076810 + AluSx SINE Alu 1 308 -4 825 255 106 15 chr6 47338453 47338789 -135076453 - MLT1H LTR MaLR -216 379 4 344 253 11 11 chr6 47338933 47339028 -135076214 - MER113 DNA MER1_type? -114 407 313 1221 193 50 82 chr6 47339521 47339756 -135075486 - Zaphod DNA AcHobo -4 4027 3786 1789 155 0 4 chr6 47339756 47340085 -135075157 - AluSx SINE Alu 0 333 6 1221 193 50 82 chr6 47340085 47340489 -135074753 - Zaphod DNA AcHobo -245 3786 802 267 170 0 0 chr6 47340522 47340569 -135074673 - L1M4 LINE L1 -1389 4757 4711 649 192 67 0 chr6 47340571 47340691 -135074551 - FLAM_C SINE Alu -14 129 2 397 242 5 67 chr6 47340692 47340899 -135074343 - L1MEc LINE L1 -4623 1957 1730 812 134 55 0 chr6 47340950 47341077 -135074165 - AluJb SINE Alu -177 135 2 887 257 100 80 chr6 47341080 47341221 -135074021 - L1MEc LINE L1 -4831 1709 1572 1697 173 4 0 chr6 47341221 47341499 -135073743 - AluSx SINE Alu -32 280 2 887 257 100 80 chr6 47341499 47341980 -135073262 - L1MEc LINE L1 -4968 1572 1078 206 31 0 31 chr6 47341980 47342012 -135073230 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1342 218 6 3 chr6 47342013 47342330 -135072912 - L1M4 LINE L1 -2136 4010 3693 * 2471 268 53 8 chr6 47342327 47343096 -135072146 - L1MEc LINE L1 -5584 1137 334 245 292 15 0 chr6 47343115 47343180 -135072062 - MER115 DNA AcHobo -626 67 2 634 265 11 37 chr6 47343181 47343370 -135071872 + MIR SINE MIR 76 259 -3 2050 87 45 0 chr6 47343505 47343793 -135071449 + AluSp SINE Alu 1 301 -12 205 362 5 36 chr6 47343818 47344042 -135071200 + L2 LINE L2 1605 1821 -1493 2296 91 3 0 chr6 47344118 47344425 -135070817 - AluSq SINE Alu -5 308 1 2132 111 3 13 chr6 47344716 47345023 -135070219 - AluSx SINE Alu -8 304 1 2184 92 10 0 chr6 47345030 47345324 -135069918 - AluSc SINE Alu -12 297 1 819 196 75 5 chr6 47345407 47345621 -135069621 - L1MB8 LINE L1 0 6178 5950 741 199 2 24 chr6 47345657 47345824 -135069418 - L1MA10 LINE L1 0 6305 6008 212 292 108 0 chr6 47346327 47346392 -135068850 + L2 LINE L2 3236 3307 -6 598 299 23 11 chr6 47346485 47346659 -135068583 + MIR SINE MIR 16 191 -71 216 280 57 95 chr6 47346668 47346986 -135068256 + L2 LINE L2 2915 3313 0 819 262 130 47 chr6 47347474 47347749 -135067493 - MLT1D LTR MaLR 0 505 181 2330 73 0 3 chr6 47347749 47348051 -135067191 - AluY SINE Alu -9 302 2 819 262 130 47 chr6 47348051 47348199 -135067043 - MLT1D LTR MaLR -324 181 47 240 357 0 0 chr6 47348301 47348399 -135066843 - MIR SINE MIR -2 260 163 233 286 52 0 chr6 47348400 47348477 -135066765 + MLT1F1 LTR MaLR 67 147 -420 2746 161 47 25 chr6 47348478 47348586 -135066656 + L1MC3 LINE L1 7214 7318 -467 1702 104 130 4 chr6 47348586 47348855 -135066387 - AluSg1 SINE Alu -6 303 1 2746 161 47 25 chr6 47348855 47349305 -135065937 + L1MC3 LINE L1 7318 7784 -1 612 194 188 6 chr6 47349305 47349343 -135065899 - MIR SINE MIR -54 208 178 2262 99 0 0 chr6 47349343 47349647 -135065595 + AluSg SINE Alu 1 304 -6 612 194 188 6 chr6 47349647 47349778 -135065464 - MIR SINE MIR -84 178 8 1245 123 17 89 chr6 47349987 47350222 -135065020 + MER20 DNA MER1_type 1 218 -1 225 292 42 14 chr6 47350722 47350794 -135064448 + MIR3 SINE MIR 81 154 -54 1547 139 45 38 chr6 47350796 47351062 -135064180 + AluJb SINE Alu 14 281 -31 271 268 81 71 chr6 47351099 47351297 -135063945 - L2 LINE L2 -16 3297 3098 240 278 160 49 chr6 47351345 47351489 -135063753 + LTR33A LTR ERVL 1 160 -363 364 291 115 6 chr6 47351695 47351860 -135063382 + LTR33A LTR ERVL 341 523 0 2014 83 43 13 chr6 47352264 47352566 -135062676 + AluY SINE Alu 1 311 0 1618 190 56 95 chr6 47353022 47353204 -135062038 + MLT1C LTR MaLR 1 189 -278 1877 155 0 7 chr6 47353204 47353500 -135061742 + AluSx SINE Alu 2 295 -17 1618 190 56 95 chr6 47353500 47353801 -135061441 + MLT1C LTR MaLR 189 465 -2 623 153 46 0 chr6 47353804 47353935 -135061307 + L1MB4 LINE L1 6005 6141 -39 690 200 100 0 chr6 47353935 47354035 -135061207 + AluJo SINE Alu 21 138 -174 204 40 0 0 chr6 47354035 47354060 -135061182 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 690 200 100 0 chr6 47354060 47354089 -135061153 + AluJo SINE Alu 138 163 -149 267 319 28 43 chr6 47354263 47354404 -135060838 - MIR3 SINE MIR -68 140 2 503 225 120 42 chr6 47354571 47354766 -135060476 + MIR SINE MIR 40 250 -12 341 314 25 8 chr6 47355372 47355493 -135059749 + MIR SINE MIR 20 142 -66 746 232 226 20 chr6 47355496 47355924 -135059318 - L2 LINE L2 -16 3297 2764 1222 201 73 85 chr6 47356086 47356432 -135058810 + MER96B DNA MER1_type 1 343 -74 1508 154 119 0 chr6 47356432 47356692 -135058550 + AluSx SINE Alu 3 293 -19 1222 201 73 85 chr6 47356692 47356767 -135058475 + MER96B DNA MER1_type 343 417 0 480 221 1 26 chr6 47356928 47357059 -135058183 - L1ME3A LINE L1 0 6170 6042 340 266 18 18 chr6 47358757 47358866 -135056376 + GA-rich Low_complexity Low_complexity 3 111 0 288 53 0 0 chr6 47359465 47359503 -135055739 + (CA)n Simple_repeat Simple_repeat 2 39 0 205 269 15 0 chr6 47360178 47360245 -135054997 + MIR SINE MIR 66 133 -75 279 297 9 27 chr6 47360594 47360705 -135054537 + CT-rich Low_complexity Low_complexity 2 110 0 233 339 67 17 chr6 47361735 47361915 -135053327 - L2 LINE L2 -218 3054 2866 359 242 99 82 chr6 47362534 47362716 -135052526 - MER91A DNA MER1_type -10 186 2 317 320 42 81 chr6 47363638 47363897 -135051345 + L2 LINE L2 3008 3256 -16 681 101 0 0 chr6 47363911 47364010 -135051232 + (GGAA)n Simple_repeat Simple_repeat 4 102 0 209 156 0 22 chr6 47364056 47364101 -135051141 + GA-rich Low_complexity Low_complexity 2 45 0 263 247 27 0 chr6 47365062 47365135 -135050107 + CT-rich Low_complexity Low_complexity 3 77 0 203 200 0 18 chr6 47365190 47365245 -135049997 + (TCTCTG)n Simple_repeat Simple_repeat 6 59 0 234 289 6 46 chr6 47365285 47365458 -135049784 + CT-rich Low_complexity Low_complexity 1 166 0 208 229 0 21 chr6 47365632 47365680 -135049562 + CT-rich Low_complexity Low_complexity 1 47 0 247 208 0 52 chr6 47366101 47366178 -135049064 + CT-rich Low_complexity Low_complexity 5 77 0 242 233 29 78 chr6 47367265 47367368 -135047874 - MIR SINE MIR -55 207 110 431 219 98 85 chr6 47368044 47368163 -135047079 + MIR SINE MIR 70 193 -69 2272 54 3 7 chr6 47368163 47368458 -135046784 + AluY SINE Alu 16 309 -2 431 219 98 85 chr6 47368458 47368502 -135046740 + MIR SINE MIR 193 235 -27 278 160 0 9 chr6 47368594 47368659 -135046583 + MIR SINE MIR 49 111 -97 444 156 0 62 chr6 47368659 47368755 -135046487 + MIR SINE MIR 65 154 -108 394 237 153 15 chr6 47369780 47369911 -135045331 + MIR3 SINE MIR 24 172 -36 361 303 123 6 chr6 47370276 47370438 -135044804 + MER5A DNA MER1_type 5 185 -4 2297 100 0 0 chr6 47370952 47371261 -135043981 - AluSx SINE Alu -3 309 1 1631 108 116 25 chr6 47371309 47371586 -135043656 + AluSq SINE Alu 1 302 -11 270 325 152 13 chr6 47371756 47372031 -135043211 - L2 LINE L2 -213 3059 2688 256 265 29 0 chr6 47372194 47372262 -135042980 + MIR SINE MIR 21 90 -172 987 257 114 31 chr6 47372287 47372950 -135042292 - L2 LINE L2 -18 3295 2596 2260 96 0 13 chr6 47372992 47373305 -135041937 - AluSq SINE Alu -4 309 1 601 224 34 7 chr6 47373306 47373453 -135041789 + MIR SINE MIR 107 257 -5 192 227 23 0 chr6 47373510 47373554 -135041688 + MIR SINE MIR 101 145 -117 204 309 0 15 chr6 47374520 47374588 -135040654 + G-rich Low_complexity Low_complexity 1 67 0 281 319 96 0 chr6 47375882 47376017 -135039225 - L1MC4a LINE L1 -1834 5974 5827 479 121 0 11 chr6 47376574 47376665 -135038577 + (CA)n Simple_repeat Simple_repeat 1 90 0 191 157 20 0 chr6 47376728 47376779 -135038463 + (CA)n Simple_repeat Simple_repeat 1 52 0 350 286 73 32 chr6 47378226 47378474 -135036768 - MLT1K LTR MaLR -321 267 10 207 386 130 0 chr6 47378563 47378770 -135036472 + L3 LINE CR1 1195 1428 -149 650 287 80 56 chr6 47379649 47379935 -135035307 - MLT1L LTR MaLR 0 615 315 2187 105 16 3 chr6 47379935 47380241 -135035001 + AluSx SINE Alu 1 310 -2 650 287 80 56 chr6 47380241 47380360 -135034882 - MLT1L LTR MaLR -300 315 200 511 278 25 6 chr6 47380360 47380599 -135034643 - LTR16C LTR ERVL -2 489 151 813 222 37 46 chr6 47380950 47381048 -135034194 - MLT1J LTR MaLR -296 215 118 1987 117 28 79 chr6 47381048 47381440 -135033802 - THE1C LTR MaLR 0 375 4 813 222 37 46 chr6 47381440 47381557 -135033685 - MLT1J LTR MaLR -393 118 2 783 270 91 51 chr6 47381557 47381578 -135033664 + MLT1L LTR MaLR 22 41 -547 1549 184 54 0 chr6 47381578 47381878 -135033364 - AluJb SINE Alu 0 312 1 783 270 91 51 chr6 47381878 47382390 -135032852 + MLT1L LTR MaLR 41 588 0 361 274 84 119 chr6 47382490 47383001 -135032241 - MLT1K LTR MaLR -24 564 72 2330 93 0 0 chr6 47383093 47383395 -135031847 - AluSq SINE Alu -11 302 1 1231 208 91 124 chr6 47383655 47383697 -135031545 - LTR33A LTR ERVL -2 521 479 432 0 0 0 chr6 47383697 47383745 -135031497 + (TG)n Simple_repeat Simple_repeat 1 48 0 1231 208 91 124 chr6 47383745 47384241 -135031001 - LTR33A LTR ERVL -44 479 1 1291 210 60 9 chr6 47384278 47384611 -135030631 + MLT1A1 LTR MaLR 14 363 -2 832 222 12 57 chr6 47384996 47385057 -135030185 + L1ME1 LINE L1 2923 2985 -3161 2099 121 0 0 chr6 47385057 47385378 -135029864 + AluSx SINE Alu 1 321 0 832 222 12 57 chr6 47385378 47385649 -135029593 + L1ME1 LINE L1 2985 3241 -2905 2465 205 77 36 chr6 47385673 47386088 -135029154 + L1ME1 LINE L1 4382 4779 -1367 2072 115 0 47 chr6 47386088 47386271 -135028971 - AluSx SINE Alu -6 306 116 297 0 0 0 chr6 47386271 47386304 -135028938 + (TA)n Simple_repeat Simple_repeat 1 33 0 2204 98 0 28 chr6 47386304 47386621 -135028621 - AluSx SINE Alu -4 308 1 2072 115 0 47 chr6 47386621 47386757 -135028485 - AluSx SINE Alu -194 118 1 2465 205 77 36 chr6 47386757 47387165 -135028077 + L1ME1 LINE L1 4779 5238 -908 267 104 0 0 chr6 47387772 47387820 -135027422 + (ATG)n Simple_repeat Simple_repeat 3 50 0 21 57 0 0 chr6 47388343 47388378 -135026864 + AT_rich Low_complexity Low_complexity 1 35 0 525 235 104 14 chr6 47388379 47388600 -135026642 + MLT1L LTR MaLR 371 611 -4 3338 192 29 60 chr6 47388688 47389024 -135026218 + L1ME1 LINE L1 5239 5584 -582 2260 80 7 17 chr6 47389024 47389326 -135025916 - AluSc SINE Alu -10 299 1 3338 192 29 60 chr6 47389326 47389942 -135025300 + L1ME1 LINE L1 5584 6161 -5 4660 104 11 1 chr6 47390021 47390554 -135024688 - L1PB1 LINE L1 -4 6147 5603 1964 132 0 3 chr6 47390554 47390895 -135024347 - AluSg SINE Alu 0 310 1 4660 104 11 1 chr6 47390895 47391114 -135024128 - L1PB1 LINE L1 -548 5603 5388 308 281 0 12 chr6 47391192 47391274 -135023968 - L1ME LINE L1 -402 5719 5639 414 241 28 71 chr6 47391280 47391421 -135023821 + MIR SINE MIR 102 236 -26 203 316 25 0 chr6 47392073 47392152 -135023090 + L2 LINE L2 3183 3263 -9 2455 67 6 3 chr6 47392929 47393241 -135022001 + AluSp SINE Alu 1 313 0 194 306 73 40 chr6 47394090 47394214 -135021028 - MIR SINE MIR -65 143 16 1019 203 11 4 chr6 47394349 47394562 -135020680 + MIR SINE MIR 15 224 -38 363 339 8 0 chr6 47394917 47395044 -135020198 - MER94 DNA DNA -4 130 3 332 318 15 48 chr6 47395073 47395295 -135019947 - MIR SINE MIR -48 214 3 577 304 25 0 chr6 47396102 47396263 -135018979 + MIR SINE MIR 86 250 -12 302 235 0 35 chr6 47396271 47396356 -135018886 + L2 LINE L2 3003 3084 -188 1053 159 88 22 chr6 47396430 47396657 -135018585 - MIR SINE MIR -9 253 12 486 285 98 0 chr6 47397393 47397559 -135017683 + MIR SINE MIR 38 218 -44 298 292 0 32 chr6 47397574 47397728 -135017514 + (TG)n Simple_repeat Simple_repeat 1 149 0 484 320 125 0 chr6 47398503 47398703 -135016539 - MIR SINE MIR -8 254 30 1831 154 3 0 chr6 47398714 47398999 -135016243 + AluJo SINE Alu 15 300 -12 184 312 64 0 chr6 47399101 47399210 -135016032 + L2 LINE L2 2862 2977 -337 294 264 149 34 chr6 47399294 47399442 -135015800 + L2 LINE L2 3106 3270 -2 220 325 60 0 chr6 47399513 47399596 -135015646 - MIR3 SINE MIR -19 189 102 203 171 0 24 chr6 47399633 47399674 -135015568 + L2 LINE L2 3228 3267 -5 213 309 48 0 chr6 47399973 47400057 -135015185 + MIR SINE MIR 61 148 -60 24 0 0 0 chr6 47400382 47400406 -135014836 + AT_rich Low_complexity Low_complexity 1 24 0 1397 219 20 27 chr6 47401439 47401736 -135013506 - AluJo SINE Alu -17 295 1 2267 83 0 20 chr6 47401765 47402067 -135013175 + AluSq SINE Alu 1 296 -17 2295 104 3 0 chr6 47402067 47402375 -135012867 + AluSx SINE Alu 1 309 -3 189 107 0 0 chr6 47402869 47402897 -135012345 + (T)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr6 47403459 47403481 -135011761 + AT_rich Low_complexity Low_complexity 1 22 0 617 218 21 90 chr6 47405622 47405856 -135009386 - MER112 DNA MER1_type 0 260 43 574 224 27 55 chr6 47406026 47406209 -135009033 + MLT1I LTR MaLR 1 178 -231 2002 124 0 17 chr6 47406892 47407190 -135008052 - AluSx SINE Alu -6 306 14 228 178 0 44 chr6 47408209 47408254 -135006988 + polypurine Low_complexity Low_complexity 4 46 0 267 313 74 57 chr6 47408594 47408770 -135006472 - L2 LINE L2 -86 3186 3008 404 242 170 32 chr6 47409419 47409602 -135005640 - MIR SINE MIR -40 168 1 298 263 63 0 chr6 47410275 47410370 -135004872 - MIR3 SINE MIR -24 184 84 2286 106 3 0 chr6 47410506 47410817 -135004425 - AluSx SINE Alu 0 312 1 267 31 0 0 chr6 47411468 47411500 -135003742 + (CTG)n Simple_repeat Simple_repeat 3 34 0 447 252 27 0 chr6 47411718 47411829 -135003413 - MIR SINE MIR -65 143 30 1495 265 52 37 chr6 47411849 47412718 -135002524 + L2 LINE L2 2420 3313 0 523 316 7 13 chr6 47412994 47413146 -135002096 + MIR3 SINE MIR 55 205 -3 609 249 99 25 chr6 47413230 47413431 -135001811 + MIR SINE MIR 2 217 -45 598 261 152 14 chr6 47413669 47413880 -135001362 - MIR SINE MIR 0 262 23 383 283 23 75 chr6 47415448 47415621 -134999621 + MIR SINE MIR 49 212 -50 932 241 16 16 chr6 47415784 47416029 -134999213 - MIR SINE MIR -10 252 8 1345 263 61 32 chr6 47416631 47416798 -134998444 + L1ME3A LINE L1 5596 5757 -413 2340 97 0 3 chr6 47416798 47417106 -134998136 + AluSx SINE Alu 1 307 -5 1345 263 61 32 chr6 47417106 47417493 -134997749 + L1ME3A LINE L1 5757 6166 -4 2282 105 0 0 chr6 47417513 47417818 -134997424 + AluSq SINE Alu 1 305 -8 363 179 32 21 chr6 47417940 47418035 -134997207 + L1ME LINE L1 5516 5611 -510 347 285 67 12 chr6 47418040 47418205 -134997037 + L1ME LINE L1 5651 5824 -297 823 258 66 0 chr6 47418445 47418658 -134996584 - MIR SINE MIR -2 260 34 535 289 7 0 chr6 47420249 47420391 -134994851 - L1ME3 LINE L1 -3 6159 6017 2614 42 0 0 chr6 47420572 47420882 -134994360 + AluY SINE Alu 1 310 -1 217 217 0 22 chr6 47421081 47421127 -134994115 + G-rich Low_complexity Low_complexity 3 47 0 205 304 0 0 chr6 47421517 47421563 -134993679 + (CACG)n Simple_repeat Simple_repeat 3 48 0 263 331 95 53 chr6 47421943 47422050 -134993192 - MIR SINE MIR -40 222 104 2408 89 0 0 chr6 47422050 47422354 -134992888 + AluSx SINE Alu 1 304 -8 263 331 95 53 chr6 47422354 47422415 -134992827 - MIR SINE MIR -158 104 47 315 308 14 39 chr6 47423174 47423347 -134991895 + MIR3 SINE MIR 33 201 -7 770 196 55 26 chr6 47424136 47424341 -134990901 - MIR SINE MIR -17 245 39 643 298 28 19 chr6 47424631 47424846 -134990396 + MIR SINE MIR 1 217 -45 255 173 58 0 chr6 47424961 47425013 -134990229 + MER5A DNA MER1_type 55 109 -80 266 207 0 0 chr6 47427895 47427953 -134987289 + (CCCCAG)n Simple_repeat Simple_repeat 3 60 0 606 265 82 5 chr6 47428883 47429079 -134986163 + LTR16C LTR ERVL 248 458 -33 688 283 113 0 chr6 47429614 47429826 -134985416 + MIR SINE MIR 19 254 -8 194 173 0 19 chr6 47429843 47429895 -134985347 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 679 166 6 22 chr6 47429917 47430098 -134985144 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 1799 156 0 7 chr6 47430170 47430445 -134984797 - AluJb SINE Alu -8 304 32 213 274 78 69 chr6 47431299 47431401 -134983841 - L2 LINE L2 -31 3282 3180 454 207 86 9 chr6 47431515 47431631 -134983611 - MIR SINE MIR -33 229 105 456 196 10 10 chr6 47432807 47432909 -134982333 + MIR SINE MIR 48 149 -113 756 200 0 0 chr6 47434475 47434635 -134980607 + (TG)n Simple_repeat Simple_repeat 1 160 0 200 351 122 8 chr6 47434683 47434814 -134980428 - MIR3 SINE MIR -15 193 48 266 179 54 0 chr6 47434944 47435000 -134980242 - L2 LINE L2 0 3313 3255 188 250 73 15 chr6 47435624 47435692 -134979550 - MIR SINE MIR -117 91 20 2466 86 0 0 chr6 47435775 47436079 -134979163 + AluSx SINE Alu 1 304 -8 447 310 6 34 chr6 47436134 47436282 -134978960 - MIR SINE MIR -67 141 34 677 226 95 6 chr6 47436491 47436659 -134978583 - MIR SINE MIR -47 215 33 247 375 7 15 chr6 47437808 47437944 -134977298 - MIR SINE MIR -51 211 77 348 273 23 55 chr6 47438172 47438300 -134976942 + MIR SINE MIR 23 146 -62 314 221 0 0 chr6 47438352 47438420 -134976822 - MER103 DNA DNA -51 115 48 853 175 32 121 chr6 47438432 47438586 -134976656 - L1MA9 LINE L1 -37 6275 6162 1956 148 16 16 chr6 47438586 47438896 -134976346 - AluJb SINE Alu -2 310 1 853 175 32 121 chr6 47438896 47439055 -134976187 - L1MA9 LINE L1 -150 6162 5990 249 215 16 2 chr6 47439157 47439227 -134976015 - Charlie8 DNA MER1_type -991 1426 1365 3681 114 0 15 chr6 47439300 47439835 -134975407 + MER1A DNA MER1_type 1 527 0 222 254 30 0 chr6 47439937 47440004 -134975238 - MIR SINE MIR -71 137 69 505 296 166 0 chr6 47440025 47440224 -134975018 - MIR SINE MIR -12 250 19 632 194 58 78 chr6 47440226 47440432 -134974810 + MIR SINE MIR 61 262 0 202 233 55 14 chr6 47440949 47441022 -134974220 - MIR SINE MIR -62 146 71 557 147 0 0 chr6 47441201 47441303 -134973939 + Charlie3 DNA MER1_type 2539 2640 -70 341 241 165 49 chr6 47441693 47441753 -134973489 + MER112 DNA MER1_type 1 53 -207 330 26 0 0 chr6 47441753 47441792 -134973450 + (CA)n Simple_repeat Simple_repeat 1 39 0 341 241 165 49 chr6 47441792 47441955 -134973287 + MER112 DNA MER1_type 53 250 -10 544 284 30 18 chr6 47442024 47442193 -134973049 - MIR SINE MIR 0 262 92 2074 99 7 11 chr6 47442365 47442667 -134972575 - AluSx SINE Alu 0 301 1 464 326 53 11 chr6 47442909 47443099 -134972143 + MIR SINE MIR 65 262 0 517 297 110 14 chr6 47443218 47443427 -134971815 - MIR SINE MIR -22 240 12 294 243 0 0 chr6 47443729 47443832 -134971410 + (CA)n Simple_repeat Simple_repeat 1 103 0 306 273 15 83 chr6 47445412 47445544 -134969698 - MIR SINE MIR -78 184 62 496 179 37 9 chr6 47445566 47445728 -134969514 - MER20 DNA MER1_type 0 219 1 490 261 33 22 chr6 47446004 47446184 -134969058 - Charlie7 DNA MER1_type -3 2609 2428 393 271 116 7 chr6 47446188 47446343 -134968899 + L1ME3A LINE L1 5437 5608 -554 1081 160 6 0 chr6 47446350 47446525 -134968717 + AluSg/x SINE Alu 137 312 0 508 287 22 2 chr6 47446526 47446694 -134968548 + L1ME3A LINE L1 5814 5983 -179 240 276 103 70 chr6 47446699 47446836 -134968406 + L1ME3A LINE L1 5935 6083 -87 2259 107 10 0 chr6 47446836 47447126 -134968116 - AluSg SINE Alu -17 293 1 240 276 103 70 chr6 47447126 47447202 -134968040 + L1ME3A LINE L1 6083 6155 -15 240 312 13 0 chr6 47447642 47447719 -134967523 + GA-rich Low_complexity Low_complexity 2 79 0 2102 139 0 7 chr6 47447796 47448097 -134967145 + AluJb SINE Alu 1 299 -13 430 269 0 0 chr6 47449328 47449432 -134965810 - L2 LINE L2 -2 3311 3208 751 181 90 23 chr6 47450302 47450479 -134964763 + MER5A DNA MER1_type 1 189 0 249 252 202 25 chr6 47450493 47450612 -134964630 - MER5B DNA MER1_type -24 154 15 736 298 29 25 chr6 47451465 47451710 -134963532 - MIR SINE MIR -3 259 14 361 261 196 7 chr6 47451913 47452066 -134963176 - MIR3 SINE MIR -4 204 23 571 113 0 70 chr6 47452421 47452536 -134962706 - FLAM_C SINE Alu 0 143 37 434 276 9 19 chr6 47452647 47452752 -134962490 + MIR SINE MIR 12 115 -147 245 209 257 9 chr6 47453015 47453120 -134962122 - MIR SINE MIR -6 256 126 21 71 0 0 chr6 47454698 47454740 -134960502 + GC_rich Low_complexity Low_complexity 1 42 0 225 277 12 0 chr6 47455146 47455229 -134960013 + (CCG)n Simple_repeat Simple_repeat 1 84 0 22 0 0 0 chr6 47455230 47455252 -134959990 + GC_rich Low_complexity Low_complexity 1 22 0 201 195 0 0 chr6 47455970 47456011 -134959231 + CT-rich Low_complexity Low_complexity 3 43 0 613 252 162 14 chr6 47456948 47457158 -134958084 + MIR SINE MIR 8 248 -14 305 256 8 99 chr6 47457710 47457831 -134957411 - L1MCa LINE L1 -4311 2115 2006 1429 204 4 22 chr6 47458049 47458318 -134956924 - AluJo SINE Alu -48 264 1 1956 152 0 10 chr6 47458376 47458678 -134956564 - AluSx SINE Alu -1 311 13 192 77 0 0 chr6 47458722 47458748 -134956494 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 195 254 315 22 chr6 47459802 47459983 -134955259 - MIR SINE MIR -14 248 15 229 293 108 54 chr6 47460127 47460441 -134954801 - L1MC/D LINE L1 -1984 5824 5494 798 152 7 21 chr6 47460548 47460693 -134954549 - Tigger2 DNA MER2_type -2575 143 1 2553 66 0 0 chr6 47460696 47460998 -134954244 - AluY SINE Alu -9 302 1 1891 77 38 11 chr6 47461101 47461362 -134953880 - AluSq SINE Alu -7 306 39 192 152 0 0 chr6 47462261 47462294 -134952948 + (TG)n Simple_repeat Simple_repeat 2 34 0 1717 174 10 7 chr6 47462509 47462803 -134952439 - AluSq SINE Alu -18 295 1 27 73 0 0 chr6 47463057 47463112 -134952130 + AT_rich Low_complexity Low_complexity 1 55 0 462 127 0 0 chr6 47463518 47463597 -134951645 + MADE1 DNA Mariner 1 79 -1 2243 143 11 3 chr6 47464896 47465267 -134949975 + THE1C LTR MaLR 1 374 -1 24 53 0 0 chr6 47466123 47466161 -134949081 + AT_rich Low_complexity Low_complexity 1 38 0 368 275 110 0 chr6 47467435 47467544 -134947698 + MIR SINE MIR 14 134 -128 242 308 100 0 chr6 47467596 47467716 -134947526 + MIR SINE MIR 118 249 -13 376 147 0 0 chr6 47468042 47468110 -134947132 - AluS SINE Alu -240 68 1 1989 141 7 0 chr6 47468144 47468428 -134946814 + AluSx SINE Alu 4 289 -23 710 168 0 8 chr6 47468434 47468559 -134946683 - FLAM_C SINE Alu -19 124 1 531 248 7 34 chr6 47468610 47468759 -134946483 + L2 LINE L2 3165 3309 -4 2301 86 40 7 chr6 47468797 47469098 -134946144 + AluSx SINE Alu 2 312 0 602 264 63 0 chr6 47469467 47469626 -134945616 - MIR SINE MIR -29 233 65 2277 87 37 3 chr6 47470382 47470680 -134944562 + AluSg SINE Alu 1 308 -2 1953 101 58 0 chr6 47470852 47471110 -134944132 + AluSx SINE Alu 1 273 -39 212 59 29 0 chr6 47471116 47471150 -134944092 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2264 108 0 0 chr6 47471632 47472094 -134943148 + AluSx SINE Alu 1 462 0 435 306 210 0 chr6 47472113 47472299 -134942943 - MIR SINE MIR 0 262 38 276 201 383 14 chr6 47472295 47472509 -134942733 + L3 LINE CR1 1276 1568 -9 * 331 241 47 10 chr6 47473043 47473173 -134942069 + MIR SINE MIR 21 151 -64 2408 94 0 0 chr6 47475526 47475823 -134939419 + AluSq SINE Alu 1 297 -16 34 24 0 0 chr6 47475960 47476001 -134939241 + AT_rich Low_complexity Low_complexity 1 41 0 * 201 257 14 0 chr6 47475967 47476041 -134939201 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 306 0 0 0 chr6 47478527 47478561 -134936681 + (TG)n Simple_repeat Simple_repeat 2 35 0 2467 86 0 3 chr6 47478881 47479185 -134936057 - AluSq SINE Alu -10 303 1 2500 89 0 3 chr6 47479370 47479683 -134935559 + AluSx SINE Alu 1 312 0 2471 80 0 0 chr6 47479730 47480030 -134935212 - AluY SINE Alu -11 300 1 241 229 60 48 chr6 47481572 47481655 -134933587 + MIR3 SINE MIR 90 173 -35 241 232 0 134 chr6 47481991 47482032 -134933210 - MIR SINE MIR -3 259 232 2303 95 0 0 chr6 47482032 47482343 -134932899 - AluSx SINE Alu 0 311 1 241 232 0 134 chr6 47482343 47482382 -134932860 - MIR SINE MIR -30 232 189 190 362 52 35 chr6 47483011 47483127 -134932115 - L2 LINE L2 -212 3060 2943 227 305 12 114 chr6 47484319 47484486 -134930756 + MIR3 SINE MIR 16 165 -43 2765 24 0 0 chr6 47485467 47485866 -134929376 + L1P1 LINE L1 5053 5451 -704 21 0 0 0 chr6 47486191 47486212 -134929030 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 47487591 47487618 -134927624 + AT_rich Low_complexity Low_complexity 1 27 0 270 294 35 0 chr6 47487639 47487724 -134927518 + MLT1A2 LTR MaLR 1 88 -286 291 350 43 21 chr6 47488070 47488256 -134926986 + L2 LINE L2 1840 2029 -1285 223 309 99 63 chr6 47488268 47488734 -134926508 + L2 LINE L2 2553 3044 -228 370 247 0 34 chr6 47489130 47489219 -134926023 - MIR SINE MIR -121 141 56 327 104 0 0 chr6 47490141 47490189 -134925053 + (TA)n Simple_repeat Simple_repeat 2 49 0 231 36 0 0 chr6 47490190 47490218 -134925024 + (CA)n Simple_repeat Simple_repeat 1 28 0 1975 158 0 0 chr6 47490271 47490595 -134924647 + AluJb SINE Alu 1 324 0 2346 114 0 9 chr6 47490600 47490915 -134924327 + AluSx SINE Alu 1 312 0 2193 132 0 0 chr6 47491348 47491644 -134923598 - AluJb SINE Alu -16 296 1 236 289 58 58 chr6 47492086 47492190 -134923052 + MIR3 SINE MIR 71 174 -34 187 294 144 48 chr6 47492600 47492746 -134922496 + L2 LINE L2 3026 3185 -87 2233 105 0 0 chr6 47493290 47493599 -134921643 + AluSx SINE Alu 1 309 0 2217 113 0 3 chr6 47494527 47494850 -134920392 - AluSc SINE Alu 0 309 1 298 286 143 0 chr6 47494944 47495063 -134920179 + L2 LINE L2 3137 3272 0 197 339 87 17 chr6 47495537 47495652 -134919590 + L2 LINE L2 3145 3267 -5 297 151 0 0 chr6 47495957 47496010 -134919232 + (GAATG)n Simple_repeat Simple_repeat 3 55 0 316 296 19 19 chr6 47496765 47496924 -134918318 + CT-rich Low_complexity Low_complexity 1 159 0 192 152 0 0 chr6 47496924 47496957 -134918285 + (TG)n Simple_repeat Simple_repeat 2 34 0 2135 122 7 3 chr6 47497172 47497466 -134917776 - AluSq SINE Alu -18 295 1 2408 90 3 0 chr6 47497478 47497777 -134917465 - AluSp SINE Alu -13 300 1 590 288 52 24 chr6 47498281 47498493 -134916749 + MIR SINE MIR 7 224 -38 21 0 0 0 chr6 47499207 47499228 -134916014 + AT_rich Low_complexity Low_complexity 1 21 0 309 293 68 23 chr6 47499763 47499896 -134915346 + MIR SINE MIR 110 248 -14 642 158 137 14 chr6 47500603 47500742 -134914500 + MER3 DNA MER1_type 43 198 -11 2471 68 0 3 chr6 47502744 47503039 -134912203 + AluY SINE Alu 1 294 -17 1094 113 27 0 chr6 47503558 47503708 -134911534 + AluSg/x SINE Alu 140 293 -17 2304 103 3 3 chr6 47503907 47504208 -134911034 + AluSp SINE Alu 1 301 -12 239 325 42 17 chr6 47504283 47504403 -134910839 + MIR3 SINE MIR 2 124 -84 1025 204 63 5 chr6 47505770 47505976 -134909266 - MER20 DNA MER1_type 0 219 2 183 100 0 0 chr6 47506107 47506137 -134909105 + (ATGGTG)n Simple_repeat Simple_repeat 3 32 0 2115 122 3 7 chr6 47507099 47507393 -134907849 - AluSc SINE Alu -16 293 1 186 293 52 52 chr6 47507750 47507866 -134907376 + L2 LINE L2 3146 3261 -11 278 314 97 8 chr6 47508177 47508301 -134906941 + L2 LINE L2 2918 3052 -220 454 261 25 0 chr6 47508529 47508648 -134906594 - MER117 DNA MER1_type -1 196 75 2096 122 0 7 chr6 47508743 47509056 -134906186 + AluSx SINE Alu 1 311 0 318 324 0 20 chr6 47509432 47509534 -134905708 + L3 LINE CR1 1429 1528 -49 755 185 20 172 chr6 47509800 47510103 -134905139 - L1MC4a LINE L1 0 7808 7552 803 196 14 0 chr6 47510110 47510258 -134904984 - FRAM SINE Alu 0 40 1 21 0 0 0 chr6 47510277 47510298 -134904944 + AT_rich Low_complexity Low_complexity 1 21 0 2484 69 0 3 chr6 47510298 47510601 -134904641 + AluY SINE Alu 1 302 -9 2242 117 0 3 chr6 47510605 47510904 -134904338 + AluSq SINE Alu 3 300 -13 306 246 14 0 chr6 47510913 47510982 -134904260 + AluJ/FLAM SINE Alu 1 70 -232 268 288 55 0 chr6 47510987 47511060 -134904182 - L2 LINE L2 -35 3278 3202 219 288 68 0 chr6 47511303 47511376 -134903866 - L2 LINE L2 -93 3220 3143 205 375 66 20 chr6 47511408 47511560 -134903682 + L2 LINE L2 2229 2387 -927 239 195 0 0 chr6 47511661 47511702 -134903540 - Alu SINE Alu -248 52 12 1966 192 49 7 chr6 47511744 47512192 -134903050 - L1MC4a LINE L1 -316 7492 7026 265 276 105 19 chr6 47512250 47512355 -134902887 - MIR SINE MIR -31 231 118 294 182 26 52 chr6 47512758 47512835 -134902407 - MLT1K LTR MaLR -323 265 191 382 308 67 0 chr6 47513066 47513186 -134902056 + MIR SINE MIR 65 192 -70 554 254 18 11 chr6 47513259 47513440 -134901802 + L1ME3A LINE L1 5986 6165 -2 2293 114 0 0 chr6 47513452 47513749 -134901493 - AluSx SINE Alu -15 297 1 2188 110 0 0 chr6 47513757 47514078 -134901164 - AluSg SINE Alu 0 321 1 251 125 42 0 chr6 47514119 47514167 -134901075 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 203 243 0 0 chr6 47514170 47514207 -134901035 + polypurine Low_complexity Low_complexity 3 39 0 2219 88 3 10 chr6 47515505 47515800 -134899442 - AluSx SINE Alu -19 293 1 188 271 34 0 chr6 47516310 47516369 -134898873 + L2 LINE L2 3126 3186 -86 1091 207 143 4 chr6 47516718 47516998 -134898244 - MER7A DNA MER2_type 0 346 30 1059 157 0 0 chr6 47517398 47517557 -134897685 + FRAM SINE Alu 1 156 -20 1230 258 82 62 chr6 47519240 47519589 -134895653 + L2 LINE L2 2351 2692 -621 2356 95 3 0 chr6 47519589 47519894 -134895348 + AluSp SINE Alu 1 306 -7 1230 258 82 62 chr6 47519894 47520232 -134895010 + L2 LINE L2 2692 3055 -258 1922 171 3 13 chr6 47520273 47520588 -134894654 - AluJo SINE Alu 0 312 1 2528 69 0 0 chr6 47520590 47520893 -134894349 - AluY SINE Alu -8 303 1 2119 98 3 24 chr6 47521006 47521322 -134893920 + AluSc SINE Alu 5 309 0 336 215 61 31 chr6 47521322 47521485 -134893757 - L1MC5 LINE L1 -275 7686 7519 303 93 0 0 chr6 47521512 47521555 -134893687 + (TC)n Simple_repeat Simple_repeat 1 43 0 246 204 56 0 chr6 47521623 47521677 -134893565 - L1MC5 LINE L1 -521 7440 7384 311 161 51 127 chr6 47521691 47521809 -134893433 - L1MC5 LINE L1 -666 7295 7187 181 179 103 0 chr6 47521951 47521990 -134893252 + L2 LINE L2 2612 2654 -660 442 282 120 79 chr6 47522188 47522807 -134892435 - L2 LINE L2 -2 3270 2542 * 1692 256 52 17 chr6 47522803 47523318 -134891924 - L2 LINE L2 0 3313 2782 1868 141 54 4 chr6 47524170 47524447 -134890795 - AluJb SINE Alu -19 293 3 1658 113 52 84 chr6 47524780 47525124 -134890118 - MER44D DNA MER2_type 0 609 7 2496 57 0 7 chr6 47525422 47525720 -134889522 - AluY SINE Alu -15 296 1 2335 119 0 0 chr6 47525734 47526046 -134889196 - AluSx SINE Alu 0 312 1 2175 141 0 0 chr6 47526267 47526579 -134888663 - AluSx SINE Alu 0 312 1 1970 155 3 3 chr6 47526739 47527035 -134888207 + AluSx SINE Alu 2 297 -15 2369 96 0 0 chr6 47527475 47527777 -134887465 - AluSx SINE Alu -10 302 1 2443 83 3 10 chr6 47527785 47528097 -134887145 - AluSp SINE Alu -3 310 1 2401 128 32 77 chr6 47528262 47528616 -134886626 - L1MB2 LINE L1 -10 6161 5835 2302 90 14 0 chr6 47528616 47528904 -134886338 - AluSp SINE Alu -21 292 1 2401 128 32 77 chr6 47528904 47529056 -134886186 - L1MB2 LINE L1 -336 5835 5678 5194 198 64 30 chr6 47529058 47529465 -134885777 - L1M4c LINE L1 -1476 4906 4514 2249 110 3 16 chr6 47529465 47529773 -134885469 - AluSq SINE Alu -9 304 1 5194 198 64 30 chr6 47529773 47529831 -134885411 - L1M4c LINE L1 -1868 4514 4459 2322 94 3 7 chr6 47529831 47530139 -134885103 - AluSg1 SINE Alu -2 307 1 5194 198 64 30 chr6 47530139 47530911 -134884331 - L1M4c LINE L1 -1923 4459 3715 2347 85 7 0 chr6 47530911 47531205 -134884037 + AluSc SINE Alu 1 296 -13 5194 198 64 30 chr6 47531205 47531339 -134883903 - L1M4c LINE L1 -2667 3715 3587 2401 107 0 0 chr6 47531339 47531649 -134883593 - AluSx SINE Alu 0 312 3 5194 198 64 30 chr6 47531649 47531908 -134883334 - L1M4c LINE L1 -2795 3587 3338 2284 108 7 3 chr6 47531908 47532214 -134883028 + AluSc SINE Alu 2 308 -1 5194 198 64 30 chr6 47532214 47532813 -134882429 - L1M4c LINE L1 -3044 3338 2761 1593 172 0 76 chr6 47532813 47532926 -134882316 + AluJb SINE Alu 1 121 -191 2198 120 10 3 chr6 47532926 47533235 -134882007 - AluY SINE Alu 0 311 1 1593 172 0 76 chr6 47533235 47533435 -134881807 + AluJb SINE Alu 121 290 -22 5194 198 64 30 chr6 47533435 47533727 -134881515 - L1M4c LINE L1 -3621 2761 2085 1668 251 87 46 chr6 47533721 47534087 -134881155 - L1M4c LINE L1 -4516 1787 1438 * 2372 86 3 0 chr6 47534087 47534377 -134880865 - AluSc SINE Alu -18 291 1 1668 251 87 46 chr6 47534377 47535228 -134880014 - L1M4c LINE L1 -4865 1438 480 180 281 180 0 chr6 47535308 47535397 -134879845 - L2 LINE L2 0 3272 3168 2247 119 0 3 chr6 47535468 47535778 -134879464 - AluSx SINE Alu -3 309 1 1959 151 40 97 chr6 47535930 47536096 -134879146 - Ricksha DNA DNA -13 3238 3064 1143 171 0 0 chr6 47536096 47536271 -134878971 - FAM SINE Alu 0 175 1 2026 91 65 0 chr6 47536280 47536556 -134878686 - AluSp SINE Alu -19 294 1 1959 151 40 97 chr6 47536556 47536617 -134878625 - Ricksha DNA DNA -195 3056 2993 2435 88 0 7 chr6 47536617 47536925 -134878317 + AluSx SINE Alu 7 312 0 1959 151 40 97 chr6 47536925 47537199 -134878043 - Ricksha DNA DNA -258 2993 2789 2182 109 16 3 chr6 47537199 47537502 -134877740 + AluSg SINE Alu 1 307 -3 1959 151 40 97 chr6 47537502 47537529 -134877713 - Ricksha DNA DNA -462 2789 2762 1966 56 0 0 chr6 47537662 47537893 -134877349 + AluY SINE Alu 75 305 -6 539 273 88 52 chr6 47537989 47538238 -134877004 - MIR SINE MIR -2 260 3 2218 74 40 30 chr6 47538486 47538783 -134876459 - AluY SINE Alu -11 300 1 898 205 5 21 chr6 47539019 47539078 -134876164 - AluJo SINE Alu -122 190 132 2034 119 0 72 chr6 47539078 47539396 -134875846 - AluSx SINE Alu -17 295 1 898 205 5 21 chr6 47539396 47539526 -134875716 - AluJo SINE Alu -180 132 4 2453 72 0 28 chr6 47539721 47540039 -134875203 - AluSg SINE Alu -1 309 1 1212 144 6 0 chr6 47540095 47540269 -134874973 + AluJb SINE Alu 136 310 -2 981 240 91 81 chr6 47540324 47541242 -134874000 - L2 LINE L2 -124 3189 2291 1187 109 42 12 chr6 47541319 47541348 -134873894 - AluSq SINE Alu -143 170 143 2457 84 0 10 chr6 47541348 47541658 -134873584 - AluSg SINE Alu -3 307 1 1187 109 42 12 chr6 47541658 47541793 -134873449 - AluSq SINE Alu -170 143 1 2116 119 19 16 chr6 47541971 47542281 -134872961 - AluSx SINE Alu -1 311 1 806 240 76 28 chr6 47542304 47542554 -134872688 - MIR SINE MIR 0 262 1 519 244 159 20 chr6 47542718 47542919 -134872323 - MIR SINE MIR -6 256 28 2308 92 3 3 chr6 47543070 47543364 -134871878 - AluSq SINE Alu -19 294 1 2028 127 50 7 chr6 47543808 47544107 -134871135 + AluSq SINE Alu 2 313 0 1311 142 0 28 chr6 47544239 47544451 -134870791 - AluJo SINE Alu -77 235 30 377 279 71 19 chr6 47544564 47544718 -134870524 + L1ME4a LINE L1 5231 5392 -754 954 249 40 27 chr6 47544783 47545153 -134870089 + L1ME4a LINE L1 5527 5901 -220 505 259 88 0 chr6 47545161 47545331 -134869911 + L1ME4a LINE L1 5933 6117 -4 2248 95 51 0 chr6 47545367 47545661 -134869581 + AluSg SINE Alu 1 309 -1 405 193 279 29 chr6 47546040 47546171 -134869071 - MER5A DNA MER1_type -5 184 19 270 297 0 22 chr6 47546171 47546262 -134868980 + MIR SINE MIR 1 89 -173 30 0 0 0 chr6 47546728 47546758 -134868484 + GC_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr6 47546910 47546939 -134868303 + GC_rich Low_complexity Low_complexity 1 29 0 328 289 99 46 chr6 47549617 47549769 -134865473 - MIR3 SINE MIR -11 197 38 259 209 104 15 chr6 47550876 47550943 -134864299 + MIR SINE MIR 180 252 -10 437 216 121 9 chr6 47551470 47551586 -134863656 - MIR SINE MIR -58 150 22 329 250 90 20 chr6 47553661 47553761 -134861481 - MER58B DNA MER1_type 0 341 235 978 187 69 5 chr6 47554237 47554440 -134860802 - MER58B DNA MER1_type -81 260 45 2412 73 0 35 chr6 47554445 47554760 -134860482 + AluSx SINE Alu 1 304 -8 2289 98 7 3 chr6 47554886 47555183 -134860059 - AluSx SINE Alu -14 298 1 203 229 62 0 chr6 47556467 47556515 -134858727 - L2 LINE L2 0 3313 3263 738 274 65 0 chr6 47557940 47558155 -134857087 - MIR SINE MIR -24 238 10 1038 252 27 0 chr6 47558635 47558857 -134856385 + MIR SINE MIR 14 241 -21 1614 175 42 3 chr6 47559014 47559299 -134855943 - AluJb SINE Alu -14 298 3 1753 122 115 7 chr6 47559326 47559596 -134855646 + AluSg1 SINE Alu 1 299 -10 259 331 174 0 chr6 47559605 47559777 -134855465 - MIR SINE MIR -14 248 47 1240 166 18 14 chr6 47560405 47560622 -134854620 + MER20 DNA MER1_type 2 219 0 2287 94 3 3 chr6 47561418 47561715 -134853527 - AluY SINE Alu -14 297 1 181 241 74 0 chr6 47561727 47561781 -134853461 - MIR SINE MIR -46 216 159 2317 113 0 6 chr6 47561978 47562289 -134852953 + AluSc SINE Alu 1 309 0 441 211 63 0 chr6 47562332 47562427 -134852815 - MIR SINE MIR -86 176 76 2115 84 11 21 chr6 47562743 47563064 -134852178 + AluSp SINE Alu 1 318 0 2707 30 0 0 chr6 47563064 47563362 -134851880 + AluY SINE Alu 1 298 -13 953 331 79 6 chr6 47563548 47564040 -134851202 + L2 LINE L2 2231 2758 -556 2069 242 201 51 chr6 47564125 47564254 -134850988 - L2 LINE L2 -3 3310 3202 266 143 0 0 chr6 47564254 47564296 -134850946 + 5S rRNA rRNA 1 42 -79 2069 242 201 51 chr6 47564296 47564356 -134850886 - L2 LINE L2 -111 3202 3152 2281 84 3 32 chr6 47564356 47564666 -134850576 + AluSx SINE Alu 1 301 -11 2069 242 201 51 chr6 47564666 47564992 -134850250 - L2 LINE L2 -161 3152 2876 1826 159 0 41 chr6 47564992 47565131 -134850111 + AluJo SINE Alu 1 144 -168 2078 118 45 0 chr6 47565131 47565418 -134849824 + AluSx SINE Alu 1 300 -12 1826 159 0 41 chr6 47565418 47565598 -134849644 + AluJo SINE Alu 144 307 -5 2069 242 201 51 chr6 47565598 47566282 -134848960 - L2 LINE L2 -437 2876 1901 241 281 47 99 chr6 47566481 47566652 -134848590 + L2 LINE L2 3152 3313 0 1477 81 25 5 chr6 47567929 47568156 -134847086 - AluSc SINE Alu 0 307 77 705 201 0 50 chr6 47568940 47569079 -134846163 - FLAM_C SINE Alu -1 132 1 840 211 28 85 chr6 47569442 47569574 -134845668 + MIR SINE MIR 2 140 -122 2641 49 0 10 chr6 47569574 47569747 -134845495 - AluY SINE Alu -6 305 135 2943 10 0 0 chr6 47569747 47570061 -134845181 - AluYb8 SINE Alu -4 314 1 2641 49 0 10 chr6 47570061 47570195 -134845047 - AluY SINE Alu -176 135 1 2478 85 0 0 chr6 47570198 47570504 -134844738 - AluSq SINE Alu -6 307 2 840 211 28 85 chr6 47570504 47570614 -134844628 + MIR SINE MIR 142 234 -28 426 188 12 0 chr6 47570808 47570893 -134844349 + MER3 DNA MER1_type 2 87 -122 612 236 50 0 chr6 47570916 47571077 -134844165 + MER113 DNA MER1_type? 319 487 -34 722 119 18 0 chr6 47571200 47571309 -134843933 + HY1 scRNA scRNA 1 111 -1 2261 108 0 0 chr6 47571312 47571607 -134843635 - AluSg SINE Alu -15 295 1 34 0 0 0 chr6 47571607 47571641 -134843601 + AT_rich Low_complexity Low_complexity 1 34 0 184 371 0 0 chr6 47571655 47571717 -134843525 + MIR3 SINE MIR 143 204 -4 2223 98 3 3 chr6 47572120 47572429 -134842813 - AluSp SINE Alu 0 309 1 338 0 24 0 chr6 47572431 47572473 -134842769 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 1796 159 3 17 chr6 47572473 47572762 -134842480 - AluJo SINE Alu -27 285 1 793 194 0 24 chr6 47572764 47572934 -134842308 - L1MA10 LINE L1 -11 6323 6158 2463 56 0 0 chr6 47572936 47573220 -134842022 - AluY SINE Alu -26 285 2 1313 208 4 23 chr6 47573227 47573491 -134841751 - AluJo SINE Alu -23 289 31 488 185 0 0 chr6 47573493 47573574 -134841668 - AluJ/FLAM SINE Alu -230 82 2 464 276 118 12 chr6 47573619 47573789 -134841453 + MER5A DNA MER1_type 1 188 -1 539 192 39 0 chr6 47573992 47574096 -134841146 - FRAM SINE Alu -10 166 59 288 209 148 35 chr6 47574169 47574284 -134840958 + MIR SINE MIR 1 128 -134 546 261 146 3 chr6 47574296 47574697 -134840545 + LTR33A LTR ERVL 1 498 -25 429 248 67 0 chr6 47574712 47574817 -134840425 + MIR SINE MIR 121 232 -30 2328 93 7 0 chr6 47574818 47575109 -134840133 - AluSq SINE Alu -20 293 1 196 204 23 23 chr6 47575324 47575368 -134839874 - L2 LINE L2 -91 3181 3138 236 324 10 29 chr6 47575378 47575467 -134839775 + MIR3 SINE MIR 10 96 -112 660 170 10 175 chr6 47575467 47575602 -134839640 - MER5A DNA MER1_type 0 189 98 1912 133 7 11 chr6 47575602 47575888 -134839354 - AluJo SINE Alu -13 299 15 660 170 10 175 chr6 47575888 47575958 -134839284 - MER5A DNA MER1_type -91 98 18 217 215 0 92 chr6 47575962 47576027 -134839215 + MIR SINE MIR 117 175 -87 2353 106 0 0 chr6 47576072 47576374 -134838868 + AluSx SINE Alu 3 304 -8 1662 176 43 20 chr6 47576385 47576687 -134838555 + AluJb SINE Alu 1 309 -3 220 200 0 0 chr6 47577327 47577382 -134837860 + T-rich Low_complexity Low_complexity 2 56 0 2405 82 7 0 chr6 47577552 47577846 -134837396 - AluSx SINE Alu -16 296 1 2165 138 0 0 chr6 47578018 47578323 -134836919 - AluSx SINE Alu -7 305 1 1693 174 41 10 chr6 47579478 47579772 -134835470 - AluJb SINE Alu -9 303 1 501 272 97 29 chr6 47582234 47582440 -134832802 - MLT1J LTR MaLR -62 449 230 432 306 44 19 chr6 47582469 47582629 -134832613 - MLT1J LTR MaLR -347 164 1 718 221 110 78 chr6 47583420 47583566 -134831676 - Tigger8 DNA MER2_type -10 656 516 2183 113 36 0 chr6 47583566 47583868 -134831374 - AluSp SINE Alu 0 313 1 2225 120 0 3 chr6 47583872 47584173 -134831069 - AluSq SINE Alu -13 300 1 718 221 110 78 chr6 47584173 47584329 -134830913 - Tigger8 DNA MER2_type -152 514 339 2312 98 0 19 chr6 47584370 47584540 -134830702 - AluSc SINE Alu -8 301 129 2403 79 0 19 chr6 47584540 47584855 -134830387 - AluY SINE Alu -1 310 2 2582 49 10 0 chr6 47584856 47585163 -134830079 - AluY SINE Alu -1 310 1 2312 98 0 19 chr6 47585163 47585297 -134829945 - AluSc SINE Alu -179 130 1 183 80 0 0 chr6 47586055 47586080 -134829162 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2206 118 3 13 chr6 47586937 47587242 -134828000 + AluSx SINE Alu 1 302 -10 321 278 89 44 chr6 47588011 47588191 -134827051 + MIR SINE MIR 20 207 -55 709 133 83 0 chr6 47588249 47588369 -134826873 - FLAM_C SINE Alu -3 130 1 336 169 0 0 chr6 47588370 47588429 -134826813 - Charlie1 DNA MER1_type -137 2624 2566 1166 112 0 0 chr6 47588429 47588581 -134826661 - AluSx SINE Alu -16 296 145 457 153 0 0 chr6 47588583 47588655 -134826587 - AluSx SINE Alu -240 73 2 183 42 0 0 chr6 47588659 47588683 -134826559 + (TA)n Simple_repeat Simple_repeat 2 25 0 1791 167 14 7 chr6 47588687 47588980 -134826262 - AluJo SINE Alu -17 295 1 3161 145 122 152 chr6 47588981 47589345 -134825897 - Charlie1 DNA MER1_type -192 2569 2196 948 118 0 15 chr6 47589345 47589481 -134825761 - FLAM_C SINE Alu -9 134 1 3161 145 122 152 chr6 47589481 47589604 -134825638 - Charlie1 DNA MER1_type -565 2196 2071 2042 113 3 11 chr6 47589604 47589927 -134825315 - AluSx SINE Alu 0 323 3 3161 145 122 152 chr6 47589927 47589938 -134825304 - Charlie1 DNA MER1_type -690 2071 2061 2125 128 0 0 chr6 47589938 47590226 -134825016 - AluSx SINE Alu -24 288 1 3161 145 122 152 chr6 47590226 47590334 -134824908 - Charlie1 DNA MER1_type -700 2061 1951 2157 110 3 7 chr6 47590334 47590633 -134824609 + AluSx SINE Alu 1 298 -14 3161 145 122 152 chr6 47590633 47590934 -134824308 - Charlie1 DNA MER1_type -810 1951 1643 2396 87 0 3 chr6 47590934 47591233 -134824009 - AluSx SINE Alu -10 302 5 3161 145 122 152 chr6 47591233 47591492 -134823750 - Charlie1 DNA MER1_type -1118 1643 15 2466 79 3 0 chr6 47591492 47591795 -134823447 - AluSg SINE Alu -6 304 1 244 208 30 50 chr6 47593574 47593675 -134821567 + G-rich Low_complexity Low_complexity 6 104 0 482 346 36 43 chr6 47596789 47597118 -134818124 - L3b LINE CR1 -5 1578 1252 617 261 28 6 chr6 47597119 47597295 -134817947 - MIR SINE MIR 0 262 83 393 156 11 1 chr6 47597970 47598242 -134817000 - AluJb SINE Alu 0 313 1 2044 103 53 4 chr6 47598281 47598562 -134816680 - AluSx SINE Alu -17 295 1 194 308 94 17 chr6 47598578 47598695 -134816547 - MIR SINE MIR 0 262 137 489 206 19 3 chr6 47598701 47598828 -134816414 - L1MC4 LINE L1 -13 8025 7668 2183 129 0 0 chr6 47599340 47599642 -134815600 + AluSx SINE Alu 1 302 -10 2341 108 3 0 chr6 47599920 47600227 -134815015 + AluSp SINE Alu 1 308 -5 2204 130 0 3 chr6 47600317 47600624 -134814618 + AluSx SINE Alu 1 306 -6 2188 110 0 7 chr6 47601767 47602058 -134813184 - AluSx SINE Alu -23 289 1 401 155 21 152 chr6 47602782 47602865 -134812377 + FRAM SINE Alu 51 40 -262 1659 127 13 0 chr6 47602865 47603101 -134812141 - AluSx SINE Alu -18 294 56 401 155 21 152 chr6 47603101 47603170 -134812072 + FRAM SINE Alu 39 115 -51 203 268 0 0 chr6 47603940 47603996 -134811246 + L2 LINE L2 3217 3272 0 338 289 150 35 chr6 47604310 47604350 -134810892 - L1ME3A LINE L1 -285 5885 5851 2301 104 0 3 chr6 47604350 47604648 -134810594 + AluSg SINE Alu 1 297 -13 338 289 150 35 chr6 47604648 47605015 -134810227 - L1ME3A LINE L1 -319 5851 5528 1776 106 133 0 chr6 47605015 47605297 -134809945 - AluSx SINE Alu 0 312 2 1647 109 0 9 chr6 47605298 47605518 -134809724 - AluSg/x SINE Alu -9 301 84 338 289 150 35 chr6 47605518 47605579 -134809663 - L1ME3A LINE L1 -641 5529 5365 331 335 156 39 chr6 47605610 47605732 -134809510 - L1ME3A LINE L1 -842 5304 5198 2293 111 0 0 chr6 47605732 47606038 -134809204 - AluY SINE Alu -5 306 1 331 335 156 39 chr6 47606038 47606377 -134808865 - L1ME3A LINE L1 -948 5198 4789 260 272 58 10 chr6 47606409 47606512 -134808730 - MER20B DNA MER1_type -644 139 32 383 276 30 63 chr6 47606523 47606791 -134808451 - L1ME3A LINE L1 -1371 4775 4517 23 0 0 0 chr6 47606806 47606829 -134808413 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr6 47607353 47607384 -134807858 + (T)n Simple_repeat Simple_repeat 1 31 0 2293 110 0 3 chr6 47607441 47607750 -134807492 + AluSg SINE Alu 1 308 -2 3477 240 144 32 chr6 47607758 47609177 -134806065 - HAL1 LINE L1 -635 1872 296 1192 157 0 43 chr6 47609230 47609440 -134805802 + AluJo SINE Alu 96 296 -16 688 195 0 0 chr6 47609442 47609555 -134805687 - AluJo/FLAM SINE Alu -194 118 6 215 292 111 29 chr6 47609759 47609930 -134805312 + MIR SINE MIR 68 252 -10 684 85 0 66 chr6 47610633 47610739 -134804503 + FLAM_A SINE Alu 28 126 -16 2030 133 14 0 chr6 47610820 47611106 -134804136 + AluSx SINE Alu 9 298 -14 283 290 11 43 chr6 47611687 47611780 -134803462 - MIR SINE MIR -116 92 2 2188 105 10 10 chr6 47611960 47612254 -134802988 + AluSg SINE Alu 1 294 -16 2405 63 3 23 chr6 47612642 47612942 -134802300 + AluSg SINE Alu 1 294 -16 43 92 0 0 chr6 47613408 47613528 -134801714 + AT_rich Low_complexity Low_complexity 1 120 0 1784 183 16 13 chr6 47613680 47613991 -134801251 - AluJb SINE Alu 0 312 1 647 171 134 27 chr6 47614015 47614202 -134801040 + MIR SINE MIR 47 253 -9 194 61 0 30 chr6 47614208 47614241 -134801001 + (CAT)n Simple_repeat Simple_repeat 2 33 0 308 280 32 0 chr6 47614354 47614447 -134800795 - MIR SINE MIR -10 252 157 2393 71 0 26 chr6 47615746 47616055 -134799187 - AluY SINE Alu -10 301 1 460 158 0 0 chr6 47616213 47616295 -134798947 - SVA Other Other -783 603 522 1179 140 70 89 chr6 47617555 47617596 -134797646 + AluJo SINE Alu 37 77 -235 2122 117 3 35 chr6 47617596 47617913 -134797329 - AluSx SINE Alu -5 307 1 1179 140 70 89 chr6 47617913 47618128 -134797114 + AluJo SINE Alu 77 288 -24 499 259 185 9 chr6 47618319 47618535 -134796707 + MIR SINE MIR 9 262 0 1991 159 10 0 chr6 47618941 47619250 -134795992 - AluSx SINE Alu 0 312 1 576 221 39 16 chr6 47619295 47619422 -134795820 - FLAM_A SINE Alu -2 131 2 25 0 0 0 chr6 47619573 47619598 -134795644 + AT_rich Low_complexity Low_complexity 1 25 0 2309 118 0 0 chr6 47619615 47619921 -134795321 + AluSx SINE Alu 1 306 -6 2231 92 3 3 chr6 47620052 47620368 -134794874 + AluSg SINE Alu 1 316 0 741 225 65 30 chr6 47620376 47620576 -134794666 - MIR SINE MIR -10 252 46 2275 68 0 31 chr6 47620886 47621217 -134794025 - AluY SINE Alu 0 322 1 1173 178 138 4 chr6 47621792 47622039 -134793203 + Charlie1b DNA MER1_type 8 287 -236 198 235 284 0 chr6 47622215 47622296 -134792946 - L2 LINE L2 -18 3295 3192 2375 83 3 0 chr6 47622460 47622762 -134792480 + AluSc SINE Alu 1 303 -6 1652 143 0 26 chr6 47622771 47623036 -134792206 + AluJo SINE Alu 37 294 -18 753 189 0 0 chr6 47623039 47623166 -134792076 + FLAM_C SINE Alu 2 128 -5 2250 115 0 0 chr6 47623334 47623652 -134791590 + AluSx SINE Alu 1 312 0 36 40 0 0 chr6 47624002 47624052 -134791190 + AT_rich Low_complexity Low_complexity 1 50 0 2326 82 0 0 chr6 47624097 47624398 -134790844 - AluSx SINE Alu 0 301 1 340 266 156 0 chr6 47624398 47624507 -134790735 - HAL1 LINE L1 -2381 126 1 1322 181 55 48 chr6 47624614 47624907 -134790335 + AluJo SINE Alu 1 295 -7 279 211 33 67 chr6 47624951 47625041 -134790201 - MIR SINE MIR -13 249 163 1977 142 10 22 chr6 47625602 47625913 -134789329 + AluSx SINE Alu 1 307 -5 507 318 76 45 chr6 47626211 47626679 -134788563 + L1ME4a LINE L1 5327 5847 -274 2274 82 17 10 chr6 47626679 47626972 -134788270 + AluSx SINE Alu 1 295 -17 507 318 76 45 chr6 47626972 47627149 -134788093 + L1ME4a LINE L1 5847 6017 -104 2417 90 0 0 chr6 47627218 47627519 -134787723 - AluY SINE Alu -10 301 1 1838 145 7 10 chr6 47627523 47627819 -134787423 - AluSg SINE Alu -2 308 14 1633 161 22 4 chr6 47628077 47628344 -134786898 + AluJb SINE Alu 15 286 -26 208 150 0 25 chr6 47628344 47628384 -134786858 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 414 125 62 0 chr6 47628391 47628455 -134786787 - AluS SINE Alu -210 102 35 2362 70 0 7 chr6 47628564 47628866 -134786376 + AluSc SINE Alu 1 300 -9 2016 121 3 13 chr6 47629197 47629511 -134785731 + AluSx SINE Alu 1 311 -1 2065 97 7 3 chr6 47629532 47629822 -134785420 + AluSx SINE Alu 1 291 -21 2188 91 10 3 chr6 47632226 47632533 -134782709 + AluSx SINE Alu 2 310 -2 23 54 0 0 chr6 47633126 47633163 -134782079 + AT_rich Low_complexity Low_complexity 1 37 0 2153 99 0 0 chr6 47633669 47633975 -134781267 + AluSx SINE Alu 1 306 0 461 158 133 42 chr6 47634679 47634887 -134780355 + FLAM_C SINE Alu 1 133 0 774 194 22 0 chr6 47634952 47635091 -134780151 + FLAM_C SINE Alu 2 143 0 21 0 0 0 chr6 47635226 47635247 -134779995 + AT_rich Low_complexity Low_complexity 1 21 0 509 167 0 12 chr6 47636177 47636261 -134778981 + AluJ/FLAM SINE Alu 2 84 -228 318 268 73 6 chr6 47636486 47636640 -134778602 - MIR SINE MIR -44 218 54 689 258 130 58 chr6 47636820 47637282 -134777960 - MLT1J LTR MaLR -16 495 1 1733 146 0 21 chr6 47637866 47638193 -134777049 + AluJb SINE Alu 1 321 0 190 234 43 0 chr6 47638205 47638252 -134776990 - MIR SINE MIR -112 150 102 2110 106 0 10 chr6 47638697 47638999 -134776243 + AluSx SINE Alu 1 299 -13 280 198 40 135 chr6 47639022 47639105 -134776137 + MIR SINE MIR 141 210 -52 1748 187 0 0 chr6 47639105 47639404 -134775838 + AluJo SINE Alu 1 299 -13 280 198 40 135 chr6 47639404 47639446 -134775796 + MIR SINE MIR 210 254 -8 186 51 0 128 chr6 47639606 47639645 -134775597 - MIR SINE MIR -1 261 228 2381 54 0 35 chr6 47640013 47640327 -134774915 + AluY SINE Alu 1 303 -8 2396 78 0 0 chr6 47643714 47644023 -134771219 + AluSc SINE Alu 1 309 0 700 157 37 37 chr6 47645862 47645996 -134769246 + AluJo SINE Alu 2 135 -177 2265 62 10 0 chr6 47648229 47648519 -134766723 + AluSg SINE Alu 1 293 -17 2416 62 0 0 chr6 47648522 47648829 -134766413 + AluSg SINE Alu 1 307 -3 2610 29 0 0 chr6 47648829 47649137 -134766105 + AluY SINE Alu 1 308 -3 25 65 0 0 chr6 47650595 47650641 -134764601 + GC_rich Low_complexity Low_complexity 1 46 0 189 0 0 0 chr6 47651147 47651168 -134764074 + (GGGAGA)n Simple_repeat Simple_repeat 1 21 0 213 94 0 0 chr6 47651174 47651206 -134764036 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 869 250 35 9 chr6 47653823 47654055 -134761187 - MIR SINE MIR 0 262 25 180 364 56 42 chr6 47654295 47654438 -134760804 + L2 LINE L2 2054 2198 -1116 2422 58 0 10 chr6 47654581 47654892 -134760350 + AluY SINE Alu 1 308 -3 2101 112 0 13 chr6 47654901 47655205 -134760037 + AluSx SINE Alu 1 300 -12 350 242 155 37 chr6 47655332 47655493 -134759749 - MIR SINE MIR 0 262 83 23 33 0 0 chr6 47656528 47656558 -134758684 + GC_rich Low_complexity Low_complexity 1 30 0 2169 87 0 10 chr6 47657421 47657720 -134757522 + AluSg SINE Alu 3 298 -12 2262 83 0 10 chr6 47657722 47658036 -134757206 + AluY SINE Alu 1 311 0 2404 61 0 3 chr6 47658047 47658357 -134756885 + AluY SINE Alu 1 309 -2 2035 95 3 30 chr6 47658376 47658703 -134756539 + AluSq SINE Alu 1 319 0 2139 91 0 39 chr6 47658728 47659036 -134756206 - AluSx SINE Alu -16 296 1 1674 120 164 3 chr6 47659447 47659739 -134755503 + MER44D DNA MER2_type 1 609 0 300 287 0 56 chr6 47660126 47660234 -134755008 + MER5A DNA MER1_type 8 109 -80 2320 74 3 0 chr6 47660259 47660555 -134754687 - AluSp SINE Alu -15 298 2 500 325 52 41 chr6 47660615 47661245 -134753997 - L1M4 LINE L1 -1986 4160 3524 2022 115 17 3 chr6 47661488 47661783 -134753459 + AluSx SINE Alu 1 299 -13 2152 81 0 49 chr6 47661928 47662054 -134753188 + AluSq SINE Alu 11 142 -171 2312 94 0 0 chr6 47662054 47662363 -134752879 + AluSg SINE Alu 2 310 0 2152 81 0 49 chr6 47662363 47662543 -134752699 + AluSq SINE Alu 142 302 -11 2416 74 0 0 chr6 47663949 47664259 -134750983 - AluY SINE Alu -1 310 1 347 296 0 32 chr6 47665345 47665396 -134749846 - MIR SINE MIR -109 153 102 2784 87 64 5 chr6 47665396 47665800 -134749442 + MSTA LTR MaLR 1 428 0 347 296 0 32 chr6 47665800 47665873 -134749369 - MIR SINE MIR -160 102 33 2182 80 17 7 chr6 47666375 47666674 -134748568 + AluSc SINE Alu 1 302 -7 1688 164 7 23 chr6 47666735 47667034 -134748208 + AluJo SINE Alu 1 294 -18 6925 154 24 41 chr6 47667187 47667786 -134747456 + L1P4 LINE L1 3862 4469 -1696 264 77 0 0 chr6 47667786 47667825 -134747417 + (CA)n Simple_repeat Simple_repeat 2 40 0 6925 154 24 41 chr6 47667825 47669174 -134746068 + L1P4 LINE L1 4469 5770 -395 3789 124 2 0 chr6 47669171 47669709 -134745533 + L1PBa LINE L1 1222 1760 -5103 * 1874 215 33 33 chr6 47669691 47670070 -134745172 + L1 LINE L1 2655 3036 -3110 * 1899 159 7 0 chr6 47670070 47670378 -134744864 + AluJo SINE Alu 3 312 0 1874 215 33 33 chr6 47670378 47670515 -134744727 + L1 LINE L1 3035 3171 -2975 2728 99 31 5 chr6 47670520 47670934 -134744308 + L1PB2 LINE L1 5724 6148 -3 2428 74 0 0 chr6 47671035 47671346 -134743896 + AluY SINE Alu 1 311 0 193 390 32 0 chr6 47671399 47671494 -134743748 - L2 LINE L2 -208 3064 2967 28 29 0 0 chr6 47671742 47671777 -134743465 + AT_rich Low_complexity Low_complexity 1 35 0 872 166 75 53 chr6 47671798 47671985 -134743257 + AluJo SINE Alu 120 310 -2 370 292 88 0 chr6 47672181 47672294 -134742948 - L2 LINE L2 0 3272 3150 1230 146 171 0 chr6 47672396 47672636 -134742606 + Ricksha DNA DNA 9 289 -2957 * 1512 115 0 47 chr6 47672634 47672717 -134742525 + Ricksha DNA DNA 1821 1906 -1340 2052 127 0 0 chr6 47672717 47673016 -134742226 + AluSx SINE Alu 1 299 -13 1512 115 0 47 chr6 47673016 47673166 -134742076 + Ricksha DNA DNA 1906 2043 -1203 1236 116 0 0 chr6 47673166 47673338 -134741904 + AluSg/x SINE Alu 134 305 -7 1994 142 83 63 chr6 47673338 47673782 -134741460 + Ricksha DNA DNA 2037 2489 -757 217 117 26 39 chr6 47673785 47673862 -134741380 + (TA)n Simple_repeat Simple_repeat 2 77 0 824 235 13 0 chr6 47673862 47674015 -134741227 - FAM SINE Alu -30 155 1 782 132 0 8 chr6 47674015 47674134 -134741108 - AluSc SINE Alu -74 235 118 373 60 0 20 chr6 47674134 47674184 -134741058 - Ricksha DNA DNA -1218 2028 1980 * 3227 149 41 107 chr6 47674176 47674442 -134740800 + Ricksha DNA DNA 2481 2763 -504 660 234 0 0 chr6 47674442 47674566 -134740676 + FLAM_A SINE Alu 1 124 -9 1697 171 0 13 chr6 47674568 47674704 -134740538 + AluSx SINE Alu 1 137 -175 2178 113 0 0 chr6 47674704 47675014 -134740228 + AluSq SINE Alu 1 310 -3 1697 171 0 13 chr6 47675014 47675182 -134740060 + AluSx SINE Alu 137 301 -11 3227 149 41 107 chr6 47675182 47675252 -134739990 + Ricksha DNA DNA 2764 2837 -430 2021 112 16 3 chr6 47675252 47675555 -134739687 - AluSg SINE Alu -3 307 1 3227 149 41 107 chr6 47675555 47675828 -134739414 + Ricksha DNA DNA 2837 3126 -141 2281 88 0 7 chr6 47675828 47676136 -134739106 - AluSx SINE Alu 0 312 7 3227 149 41 107 chr6 47676136 47676197 -134739045 + Ricksha DNA DNA 3126 3189 -78 1891 91 65 0 chr6 47676197 47676473 -134738769 + AluSp SINE Alu 1 294 -19 1115 171 0 0 chr6 47676482 47676657 -134738585 + FAM SINE Alu 1 175 0 3227 149 41 107 chr6 47676657 47676833 -134738409 + Ricksha DNA DNA 3197 3254 -13 2081 123 0 3 chr6 47676975 47677285 -134737957 + AluSx SINE Alu 1 309 -3 229 258 16 0 chr6 47677294 47677356 -134737886 + L1M4 LINE L1 173 235 -6078 187 281 180 0 chr6 47677356 47677445 -134737797 + L2 LINE L2 3168 3272 0 1787 243 97 40 chr6 47677525 47678377 -134736865 + L1M4 LINE L1 480 1448 -4860 2230 86 3 0 chr6 47678377 47678667 -134736575 + AluSc SINE Alu 1 291 -18 1787 243 97 40 chr6 47678667 47679033 -134736209 + L1M4 LINE L1 1448 1792 -4516 * 3046 198 64 28 chr6 47679027 47679319 -134735923 + L1M4 LINE L1 2085 2365 -4017 1606 172 0 76 chr6 47679319 47679519 -134735723 - AluJb SINE Alu -22 290 121 2207 120 10 3 chr6 47679519 47679828 -134735414 + AluY SINE Alu 1 311 0 1606 172 0 76 chr6 47679828 47679941 -134735301 - AluJb SINE Alu -191 121 1 3046 198 64 28 chr6 47679941 47680540 -134734702 + L1M4 LINE L1 2365 3031 -3351 2277 111 7 3 chr6 47680540 47680846 -134734396 - AluSc SINE Alu -1 308 2 3046 198 64 28 chr6 47680846 47681105 -134734137 + L1M4 LINE L1 3031 3279 -3103 2470 62 0 39 chr6 47681105 47681413 -134733829 + AluSq SINE Alu 3 298 -15 284 151 12 81 chr6 47681488 47681574 -134733668 - MER116 DNA Mariner 0 80 1 457 241 119 32 chr6 47681574 47681852 -134733390 + L1M4 LINE L1 4549 4850 -1532 470 264 142 29 chr6 47681873 47682183 -134733059 + L1M4 LINE L1 5223 5567 -815 2264 89 0 20 chr6 47682275 47682567 -134732675 - AluSg SINE Alu -24 286 1 315 250 0 29 chr6 47682657 47682725 -134732517 + L1M4 LINE L1 5602 5667 -747 592 250 76 0 chr6 47682784 47682968 -134732274 + MIR SINE MIR 59 256 -6 2345 84 0 44 chr6 47683032 47683352 -134731890 - AluSq SINE Alu -7 306 1 2177 115 0 22 chr6 47684435 47684748 -134730494 - AluJb SINE Alu -6 306 1 2344 84 20 3 chr6 47686002 47686300 -134728942 - AluSp SINE Alu -9 304 2 220 261 22 65 chr6 47686677 47686769 -134728473 - MIR SINE MIR -58 204 117 228 242 99 56 chr6 47687603 47687764 -134727478 - L1MC/D LINE L1 -1898 5910 5743 1998 93 96 0 chr6 47687894 47688164 -134727078 - AluSc SINE Alu -13 296 1 21 0 0 0 chr6 47688855 47688876 -134726366 + AT_rich Low_complexity Low_complexity 1 21 0 1927 119 0 4 chr6 47688986 47689239 -134726003 - AluSq SINE Alu -61 252 1 1954 136 0 36 chr6 47689675 47690006 -134725236 - AluJb SINE Alu 0 312 7 753 232 49 49 chr6 47690031 47690337 -134724905 - L1MC5 LINE L1 -53 7908 7603 673 223 46 0 chr6 47690346 47690541 -134724701 + L1MA10 LINE L1 5968 6334 0 676 257 36 80 chr6 47690565 47690937 -134724305 - L1MC4a LINE L1 -163 7645 7269 209 227 0 0 chr6 47691217 47691261 -134723981 + (TA)n Simple_repeat Simple_repeat 2 45 0 195 42 0 0 chr6 47691474 47691498 -134723744 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 210 143 0 0 chr6 47692352 47692387 -134722855 + (TG)n Simple_repeat Simple_repeat 2 36 0 2177 140 0 0 chr6 47692814 47693114 -134722128 + AluSx SINE Alu 1 300 -12 1270 102 0 0 chr6 47693114 47693280 -134721962 + AluSg/x SINE Alu 145 310 -2 2491 71 3 0 chr6 47693284 47693579 -134721663 + AluSc SINE Alu 1 296 -13 813 174 0 0 chr6 47693591 47693723 -134721519 + FLAM_A SINE Alu 1 132 -1 1744 169 43 13 chr6 47693724 47694025 -134721217 + AluJb SINE Alu 1 310 -2 253 198 52 73 chr6 47694035 47694131 -134721111 + L1MB8 LINE L1 6084 6177 -1 26 0 0 0 chr6 47695754 47695780 -134719462 + GC_rich Low_complexity Low_complexity 1 26 0 438 314 58 18 chr6 47696094 47696320 -134718922 + MIR SINE MIR 16 250 -12 576 161 0 0 chr6 47696329 47696422 -134718820 + AluSx SINE Alu 2 94 -218 2511 80 0 0 chr6 47696422 47696722 -134718520 + AluSq SINE Alu 1 300 -13 1730 72 0 40 chr6 47696722 47696944 -134718298 + AluSx SINE Alu 80 293 -17 790 219 142 5 chr6 47697641 47697846 -134717396 - MIR SINE MIR -3 259 27 834 20 0 0 chr6 47697953 47698054 -134717188 + L1PA3 LINE L1 6053 6153 -2 197 138 0 0 chr6 47698205 47698234 -134717008 + MIR SINE MIR 123 151 -111 230 243 271 0 chr6 47698908 47699015 -134716227 + MER5A DNA MER1_type 46 181 -8 2013 62 62 18 chr6 47699687 47699742 -134715500 + AluSc SINE Alu 1 52 -257 266 0 0 29 chr6 47699742 47699777 -134715465 + (CGGGG)n Simple_repeat Simple_repeat 1 34 0 2013 62 62 18 chr6 47699777 47699994 -134715248 + AluSc SINE Alu 52 285 -24 194 288 14 41 chr6 47700002 47700075 -134715167 - MER5B DNA MER1_type -61 117 47 716 164 0 0 chr6 47700097 47700213 -134715029 - AluJb SINE Alu -32 280 165 1779 173 27 10 chr6 47700214 47700515 -134714727 - AluSg SINE Alu -4 306 1 288 0 0 0 chr6 47700781 47700813 -134714429 + (CA)n Simple_repeat Simple_repeat 2 33 0 923 189 102 19 chr6 47701333 47701539 -134713703 - MER58A DNA MER1_type -1 223 1 1149 58 17 35 chr6 47701565 47701737 -134713505 - MER30 DNA MER1_type -58 172 4 194 171 24 0 chr6 47701820 47701861 -134713381 - MIR SINE MIR -112 150 109 186 43 0 0 chr6 47702325 47702348 -134712894 + (TG)n Simple_repeat Simple_repeat 1 23 0 287 236 0 0 chr6 47702419 47702474 -134712768 + MIR SINE MIR 17 71 -191 423 158 0 69 chr6 47702475 47702587 -134712655 + L1MB8 LINE L1 6017 6123 -43 669 251 53 16 chr6 47702587 47702774 -134712468 + MIR SINE MIR 57 250 -12 26 0 0 0 chr6 47704585 47704611 -134710631 + GC_rich Low_complexity Low_complexity 1 26 0 2417 84 3 0 chr6 47705126 47705435 -134709807 - AluSg SINE Alu 0 310 1 614 256 20 74 chr6 47705811 47706108 -134709134 - L1MC4 LINE L1 0 8042 7762 2289 107 0 10 chr6 47706108 47706408 -134708834 + AluSq SINE Alu 2 298 -15 2659 54 0 13 chr6 47706410 47706724 -134708518 + AluY SINE Alu 1 310 -1 2286 121 0 0 chr6 47706787 47707092 -134708150 - AluSx SINE Alu -2 310 6 2247 108 0 0 chr6 47707155 47707442 -134707800 - AluSx SINE Alu -25 287 1 2529 80 6 0 chr6 47707772 47708083 -134707159 + AluSq SINE Alu 1 313 0 2271 92 13 35 chr6 47708098 47708414 -134706828 + AluSc SINE Alu 1 309 0 1780 185 10 10 chr6 47708499 47708802 -134706440 + AluSx SINE Alu 1 303 -9 2141 115 3 10 chr6 47708846 47709141 -134706101 + AluSx SINE Alu 1 293 -19 397 133 17 0 chr6 47709235 47709295 -134705947 - AluS SINE Alu -236 66 6 2265 110 7 3 chr6 47709419 47709728 -134705514 + AluSx SINE Alu 1 310 -2 2369 93 6 16 chr6 47709744 47710056 -134705186 + AluSp SINE Alu 1 309 -4 184 321 18 0 chr6 47710086 47710142 -134705100 + MIR SINE MIR 120 176 -86 2292 113 3 0 chr6 47710554 47710855 -134704387 - AluSp SINE Alu -11 302 1 426 249 162 27 chr6 47711383 47711568 -134703674 + MIR SINE MIR 42 251 -11 2382 83 20 0 chr6 47711871 47712173 -134703069 + AluY SINE Alu 1 308 -3 27 0 0 0 chr6 47712192 47712219 -134703023 + AT_rich Low_complexity Low_complexity 1 27 0 2060 138 10 13 chr6 47712319 47712631 -134702611 - AluSx SINE Alu -1 311 1 2337 81 3 0 chr6 47712740 47713046 -134702196 - AluSx SINE Alu 0 307 1 453 205 98 16 chr6 47713070 47713192 -134702050 + MIR3 SINE MIR 23 154 -54 2264 125 0 0 chr6 47713581 47713885 -134701357 + AluSg SINE Alu 1 304 -6 231 245 0 0 chr6 47714093 47714146 -134701096 + L1ME LINE L1 5606 5658 -512 202 231 15 31 chr6 47714643 47714708 -134700534 - MIR SINE MIR -126 136 73 837 238 99 9 chr6 47715071 47715294 -134699948 - MIR SINE MIR -10 252 10 230 261 29 0 chr6 47715512 47715581 -134699661 - MIR SINE MIR -56 152 82 212 227 0 0 chr6 47716258 47716302 -134698940 + (CCCA)n Simple_repeat Simple_repeat 1 44 0 769 220 149 9 chr6 47716303 47716528 -134698714 - MIR SINE MIR 0 262 10 284 250 10 42 chr6 47716531 47716627 -134698615 + (TCCA)n Simple_repeat Simple_repeat 3 95 0 283 331 134 0 chr6 47716643 47716785 -134698457 - L2 LINE L2 -303 2969 2809 219 207 11 35 chr6 47716796 47716883 -134698359 + (TCCA)n Simple_repeat Simple_repeat 3 87 0 557 70 53 9 chr6 47716900 47717014 -134698228 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 654 229 33 7 chr6 47717776 47717929 -134697313 - MIR SINE MIR -47 215 59 2214 98 24 7 chr6 47717929 47718226 -134697016 - AluSq SINE Alu -11 302 1 723 135 43 43 chr6 47718237 47718378 -134696864 - FLAM_C SINE Alu -1 142 2 467 327 7 0 chr6 47718626 47718779 -134696463 - MIR SINE MIR -80 182 29 1868 131 3 59 chr6 47719169 47719475 -134695767 - AluSx SINE Alu -18 294 6 859 136 8 0 chr6 47719487 47719619 -134695623 - FLAM_C SINE Alu 0 133 1 1035 150 47 19 chr6 47719816 47720029 -134695213 - MER20 DNA MER1_type 0 219 1 240 252 27 0 chr6 47720479 47720553 -134694689 + MIR SINE MIR 30 106 -102 271 322 17 8 chr6 47720555 47720673 -134694569 + MIR3 SINE MIR 68 187 -21 772 195 77 0 chr6 47721083 47721252 -134693990 + MER20 DNA MER1_type 30 211 -8 180 224 41 0 chr6 47721314 47721363 -134693879 + L2 LINE L2 3222 3272 0 603 251 73 21 chr6 47721706 47721897 -134693345 + MIR SINE MIR 22 222 -40 2039 148 0 10 chr6 47721921 47722219 -134693023 - AluJb SINE Alu -17 295 1 2267 118 3 0 chr6 47722837 47723142 -134692100 + AluSp SINE Alu 1 306 -7 276 30 0 0 chr6 47724018 47724051 -134691191 + (T)n Simple_repeat Simple_repeat 1 33 0 2404 58 0 4 chr6 47724062 47724340 -134690902 + AluSq SINE Alu 1 277 -36 2067 113 38 10 chr6 47725595 47725888 -134689354 + AluSx SINE Alu 5 305 -7 973 188 18 64 chr6 47726232 47726311 -134688931 - MER63A DNA MER1_type -1478 210 129 2486 61 0 35 chr6 47726311 47726623 -134688619 - AluY SINE Alu -10 301 1 973 188 18 64 chr6 47726623 47726761 -134688481 - MER63A DNA MER1_type -1559 129 3 278 247 27 0 chr6 47727014 47727087 -134688155 - HAL1 LINE L1 -1594 913 839 735 266 104 92 chr6 47727165 47727659 -134687583 - HAL1 LINE L1 -1902 605 118 2444 89 3 3 chr6 47727659 47727972 -134687270 - AluSp SINE Alu 0 313 1 2464 78 0 0 chr6 47727974 47728270 -134686972 - AluSp SINE Alu -17 296 1 735 266 104 92 chr6 47728270 47728370 -134686872 - HAL1 LINE L1 -2389 118 1 214 39 0 0 chr6 47729428 47729454 -134685788 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 2102 66 35 52 chr6 47729454 47729741 -134685501 - AluY SINE Alu -28 283 2 2252 107 0 0 chr6 47729746 47730037 -134685205 - AluSq SINE Alu -22 291 1 2422 93 6 0 chr6 47730046 47730357 -134684885 - AluSq SINE Alu 0 313 1 922 259 138 16 chr6 47730431 47730860 -134684382 - LTR33 LTR ERVL -27 494 14 2367 206 47 25 chr6 47731056 47731561 -134683681 + MLT1E LTR MaLR 9 531 -62 2230 98 3 3 chr6 47731561 47731893 -134683349 + AluSp SINE Alu 1 332 0 2367 206 47 25 chr6 47731893 47731958 -134683284 + MLT1E LTR MaLR 531 593 0 2795 140 95 49 chr6 47731966 47732282 -134682960 - MLT2B3 LTR ERVL -3 551 200 204 40 0 0 chr6 47732282 47732307 -134682935 + (GA)n Simple_repeat Simple_repeat 2 26 0 2795 140 95 49 chr6 47732307 47732517 -134682725 - MLT2B3 LTR ERVL -354 200 1 220 267 86 29 chr6 47732522 47732627 -134682615 - L2 LINE L2 -207 3106 2996 2325 84 0 0 chr6 47732945 47733229 -134682013 - AluSg SINE Alu -13 297 14 850 203 16 57 chr6 47733498 47733578 -134681664 - MIR SINE MIR -1 261 179 2413 93 0 7 chr6 47733578 47733880 -134681362 - AluSx SINE Alu -12 300 1 850 203 16 57 chr6 47733880 47733991 -134681251 - MIR SINE MIR -83 179 78 522 189 0 0 chr6 47733991 47734081 -134681161 + MLT1I LTR MaLR 312 401 -8 275 208 38 19 chr6 47734082 47734188 -134681054 + (TA)n Simple_repeat Simple_repeat 2 109 0 284 132 26 145 chr6 47734890 47734966 -134680276 - MER91 DNA MER1_type -73 67 1 231 301 239 0 chr6 47735938 47736051 -134679191 - L2 LINE L2 -20 3252 3113 265 270 78 35 chr6 47736479 47736594 -134678648 + MIR3 SINE MIR 14 133 -75 2480 75 0 13 chr6 47737284 47737589 -134677653 - AluSx SINE Alu -5 307 7 867 269 95 52 chr6 47737689 47738112 -134677130 + L2 LINE L2 2873 3313 0 2388 87 0 0 chr6 47738332 47738664 -134676578 - AluSq SINE Alu 0 332 1 633 144 157 33 chr6 47738719 47738872 -134676370 + MER58A DNA MER1_type 45 216 -8 363 316 149 0 chr6 47739138 47739306 -134675936 + MIR SINE MIR 63 255 -7 262 333 63 9 chr6 47739311 47739422 -134675820 - MIR SINE MIR -58 204 88 240 230 30 56 chr6 47739496 47739611 -134675631 - HAL1b LINE L1 -16 6105 1234 327 281 65 39 chr6 47740444 47740597 -134674645 + MIR3 SINE MIR 30 186 -22 389 338 137 23 chr6 47741842 47742061 -134673181 - L2 LINE L2 -9 3263 3020 679 221 8 0 chr6 47742359 47742486 -134672756 + FLAM_A SINE Alu 1 128 -5 2388 109 0 0 chr6 47742489 47742801 -134672441 + AluSx SINE Alu 1 312 0 193 263 35 0 chr6 47743035 47743092 -134672150 - L3b LINE CR1 -185 1398 1340 2417 73 7 3 chr6 47743185 47743485 -134671757 + AluY SINE Alu 1 301 -10 1990 146 0 13 chr6 47743701 47744002 -134671240 + AluSx SINE Alu 1 297 -15 323 209 0 23 chr6 47744371 47744457 -134670785 + (TATG)n Simple_repeat Simple_repeat 3 86 0 2296 102 3 0 chr6 47744458 47744753 -134670489 - AluSp SINE Alu -17 296 1 282 116 0 0 chr6 47744759 47744802 -134670440 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 2104 138 6 22 chr6 47744804 47745122 -134670120 - AluSq SINE Alu 0 313 1 305 338 22 15 chr6 47745511 47745647 -134669595 - MIR3 SINE MIR -46 162 26 2474 58 7 10 chr6 47746012 47746320 -134668922 - AluY SINE Alu -3 308 2 286 202 156 64 chr6 47747237 47747346 -134667896 - MIR SINE MIR -43 219 101 216 310 58 0 chr6 47747477 47747564 -134667678 - MIR3 SINE MIR -47 161 70 2342 109 3 0 chr6 47748243 47748547 -134666695 + AluSq SINE Alu 3 307 -6 279 316 86 0 chr6 47748596 47748713 -134666529 + L2 LINE L2 3144 3270 -2 * 308 322 66 0 chr6 47748706 47748827 -134666415 + MIR SINE MIR 41 169 -93 589 198 69 180 chr6 47748883 47749033 -134666209 - L1M4 LINE L1 -2884 3262 3097 2383 90 3 0 chr6 47749033 47749334 -134665908 - AluY SINE Alu -9 302 1 2122 153 0 6 chr6 47749339 47749653 -134665589 - AluJb SINE Alu 0 312 1 589 198 69 180 chr6 47749653 47749773 -134665469 - L1M4 LINE L1 -3053 3093 2961 1993 162 3 0 chr6 47749773 47750076 -134665166 - AluJo SINE Alu -8 304 1 589 198 69 180 chr6 47750076 47750224 -134665018 - L1M4 LINE L1 -3185 2961 2903 360 0 0 0 chr6 47750224 47750264 -134664978 + (TG)n Simple_repeat Simple_repeat 2 41 0 589 198 69 180 chr6 47750264 47750358 -134664884 - L1M4 LINE L1 -3243 2903 2800 246 114 43 14 chr6 47750817 47750887 -134664355 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 872 159 0 0 chr6 47750887 47751013 -134664229 - FLAM_C SINE Alu -7 126 1 345 266 49 155 chr6 47751017 47751366 -134663876 + L2 LINE L2 2961 3272 0 383 145 171 0 chr6 47752543 47752619 -134662623 - MIR SINE MIR -110 152 64 1701 209 184 6 chr6 47753492 47753965 -134661277 + L1MC4 LINE L1 7100 7656 -386 327 172 0 0 chr6 47753970 47754004 -134661238 + A-rich Low_complexity Low_complexity 2 38 -27 2383 94 0 3 chr6 47754004 47754311 -134660931 + AluSc SINE Alu 1 306 -3 327 172 0 0 chr6 47754311 47754340 -134660902 + A-rich Low_complexity Low_complexity 37 65 0 829 174 76 29 chr6 47754343 47754360 -134660882 + AluJb SINE Alu 120 135 -177 2051 160 0 6 chr6 47754360 47754673 -134660569 + AluSx SINE Alu 1 311 -1 829 174 76 29 chr6 47754673 47754827 -134660415 + AluJb SINE Alu 135 299 -13 291 197 141 0 chr6 47754827 47754898 -134660344 + L1MC4 LINE L1 7830 7910 -132 403 252 1 56 chr6 47754943 47755106 -134660136 + L1MC4 LINE L1 7664 7785 0 317 250 133 17 chr6 47755192 47755312 -134659930 - L1M4 LINE L1 -1532 4614 4481 288 291 22 52 chr6 47755386 47755520 -134659722 + MIR SINE MIR 87 216 -46 398 311 49 30 chr6 47755989 47756153 -134659089 - L3 LINE CR1 -19 1558 1392 271 324 7 28 chr6 47756318 47756460 -134658782 + GA-rich Low_complexity Low_complexity 3 141 0 2493 88 0 3 chr6 47756979 47757285 -134657957 + AluSg SINE Alu 1 305 -5 183 270 45 56 chr6 47757525 47757614 -134657628 - MIR SINE MIR -63 145 58 2262 87 3 69 chr6 47758011 47758204 -134657038 - AluSx SINE Alu 0 312 149 844 48 0 0 chr6 47758204 47758309 -134656933 - L1PA6 LINE L1 0 6154 6050 2262 87 3 69 chr6 47758309 47758447 -134656795 - AluSx SINE Alu -163 149 3 493 292 189 45 chr6 47758603 47758975 -134656267 + L2 LINE L2 323 752 -2562 2381 96 0 3 chr6 47758975 47759277 -134655965 - AluSq SINE Alu -12 301 1 227 192 90 64 chr6 47759363 47759441 -134655801 + L2 LINE L2 719 798 -2516 * 921 181 36 0 chr6 47759434 47759600 -134655642 + MER5A DNA MER1_type 16 187 -2 * 1447 298 148 24 chr6 47759600 47760423 -134654819 + L2 LINE L2 801 1726 -1588 388 182 204 64 chr6 47760426 47760564 -134654678 + ORSL DNA AcHobo 1 118 -157 2268 92 3 14 chr6 47760564 47760895 -134654347 - AluSx SINE Alu 0 312 1 388 182 204 64 chr6 47760895 47760918 -134654324 + ORSL DNA AcHobo 118 136 -139 1760 158 35 0 chr6 47760918 47761202 -134654040 - AluJb SINE Alu -18 294 1 388 182 204 64 chr6 47761202 47761259 -134653983 + ORSL DNA AcHobo 136 251 -24 1027 237 272 21 chr6 47761382 47761797 -134653445 + MLT1G1 LTR MaLR 79 536 -6 2419 302 134 9 chr6 47761836 47762870 -134652372 + L2 LINE L2 1820 3065 -248 2273 104 0 3 chr6 47762870 47763167 -134652075 - AluSq SINE Alu -17 296 1 2419 302 134 9 chr6 47763167 47763450 -134651792 + L2 LINE L2 3065 3311 -2 199 333 0 14 chr6 47763430 47763499 -134651743 + MIR SINE MIR 195 262 0 * 234 271 0 0 chr6 47763575 47763623 -134651619 - MIR3 SINE MIR -10 198 151 1065 164 107 0 chr6 47763762 47763939 -134651303 - AluSg/x SINE Alu -30 280 85 2140 106 7 0 chr6 47764176 47764513 -134650729 + AluSx SINE Alu 1 339 0 1515 88 74 9 chr6 47764932 47765148 -134650094 - MER30 DNA MER1_type 0 230 1 274 237 43 115 chr6 47765266 47765422 -134649820 + MIR SINE MIR 50 194 -62 1655 164 10 59 chr6 47765431 47765736 -134649506 + AluJb SINE Alu 1 290 -22 2395 71 17 3 chr6 47765743 47766039 -134649203 + AluY SINE Alu 1 300 -11 195 293 0 0 chr6 47766148 47766189 -134649053 - L2 LINE L2 -18 3254 3214 352 267 30 36 chr6 47766281 47766427 -134648815 - MIR SINE MIR -68 140 7 1844 177 0 7 chr6 47766705 47767004 -134648238 + AluJb SINE Alu 1 297 -15 1095 167 0 17 chr6 47767006 47767186 -134648056 + AluJo/FRAM SINE Alu 136 312 0 1987 102 78 0 chr6 47767220 47767503 -134647739 - AluSp SINE Alu -8 305 1 400 38 0 0 chr6 47767519 47767572 -134647670 + MADE1 DNA Mariner 27 79 -1 2489 84 0 3 chr6 47767870 47768179 -134647063 + AluSc SINE Alu 1 308 -1 1952 115 0 0 chr6 47768299 47768552 -134646690 - AluSq SINE Alu -60 253 1 2386 77 0 7 chr6 47769151 47769450 -134645792 - AluSc SINE Alu -12 297 1 2151 117 17 10 chr6 47770930 47771228 -134644014 - AluSx SINE Alu -12 300 1 2311 107 10 10 chr6 47771399 47771708 -134643534 + AluSx SINE Alu 4 312 0 222 356 78 0 chr6 47771708 47771792 -134643450 + L2 LINE L2 3170 3260 -12 801 244 118 22 chr6 47771794 47772023 -134643219 - MIR SINE MIR -10 252 2 2186 106 27 3 chr6 47773329 47773622 -134641620 + AluSx SINE Alu 1 300 -12 331 322 75 16 chr6 47774164 47774352 -134640890 + MIR SINE MIR 21 213 -49 718 241 98 15 chr6 47774786 47775051 -134640191 + MER102a DNA MER1_type 33 319 -11 2108 124 3 0 chr6 47775097 47775400 -134639842 + AluSx SINE Alu 1 304 0 1907 97 112 4 chr6 47777037 47777306 -134637936 + AluSx SINE Alu 1 298 -14 1754 147 38 20 chr6 47777357 47777649 -134637593 - AluJb SINE Alu -7 305 9 2292 110 7 0 chr6 47777944 47778252 -134636990 - AluSg SINE Alu 0 310 1 243 0 0 0 chr6 47778290 47778317 -134636925 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 252 0 0 0 chr6 47778316 47778344 -134636898 + (TG)n Simple_repeat Simple_repeat 2 29 0 2259 115 0 0 chr6 47778459 47778764 -134636478 + AluSq SINE Alu 1 305 -8 1965 176 101 11 chr6 47778764 47779241 -134636001 + Charlie1b DNA MER1_type 4 523 0 417 279 52 32 chr6 47779360 47779514 -134635728 + MIR3 SINE MIR 43 199 -9 189 0 0 0 chr6 47780021 47780042 -134635200 + (CA)n Simple_repeat Simple_repeat 2 22 0 1715 148 6 75 chr6 47780042 47780374 -134634868 - AluJo SINE Alu -1 311 3 328 229 107 66 chr6 47780387 47780509 -134634733 + L1ME4a LINE L1 5995 6121 0 2370 99 0 6 chr6 47780824 47781136 -134634106 + AluSx SINE Alu 1 310 -2 1982 108 16 59 chr6 47781141 47781447 -134633795 + AluSx SINE Alu 1 293 -19 23 0 0 0 chr6 47781468 47781491 -134633751 + AT_rich Low_complexity Low_complexity 1 23 0 1557 200 10 10 chr6 47781537 47781842 -134633400 - AluJo SINE Alu -7 305 1 521 281 70 70 chr6 47781897 47782153 -134633089 + MIR SINE MIR 7 262 0 209 156 0 0 chr6 47782175 47782207 -134633035 + MIR SINE MIR 157 188 -74 358 341 30 30 chr6 47782305 47782440 -134632802 - MIR SINE MIR -58 150 16 2273 110 7 0 chr6 47782527 47782827 -134632415 - AluSp SINE Alu -11 302 1 347 188 145 0 chr6 47783162 47783231 -134632011 - MIR SINE MIR -62 146 68 2316 117 0 0 chr6 47784083 47784392 -134630850 - AluSp SINE Alu -4 309 1 208 235 44 59 chr6 47784658 47784726 -134630516 - L2 LINE L2 -1 3271 3205 2018 90 30 43 chr6 47785069 47785368 -134629874 + AluY SINE Alu 1 295 -16 775 179 0 0 chr6 47785378 47785495 -134629747 + FLAM_C SINE Alu 2 118 -25 2462 58 0 3 chr6 47785688 47785979 -134629263 + AluY SINE Alu 17 306 -5 1886 137 7 33 chr6 47785984 47786291 -134628951 + AluSx SINE Alu 1 299 -13 602 176 42 0 chr6 47786350 47786469 -134628773 + AluSg/x SINE Alu 176 299 -13 198 103 0 0 chr6 47787126 47787155 -134628087 + (T)n Simple_repeat Simple_repeat 1 29 0 395 338 153 26 chr6 47790812 47791046 -134624196 + L2 LINE L2 1487 1690 -1624 231 61 0 0 chr6 47791046 47791079 -134624163 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1891 167 0 0 chr6 47791086 47791368 -134623874 - AluJo SINE Alu -30 282 1 395 338 153 26 chr6 47791368 47791590 -134623652 + L2 LINE L2 1695 2010 -1304 333 215 0 54 chr6 47791614 47791707 -134623535 + MER20 DNA MER1_type 130 217 -2 903 217 53 14 chr6 47791748 47791955 -134623287 + MER58A DNA MER1_type 2 216 -8 744 272 72 28 chr6 47792775 47792959 -134622283 + MIR SINE MIR 2 201 -61 1779 175 121 6 chr6 47792959 47793314 -134621928 + MSTD LTR MaLR 1 396 0 744 272 72 28 chr6 47793314 47793379 -134621863 + MIR SINE MIR 201 262 0 648 292 85 30 chr6 47793727 47793963 -134621279 + MIR SINE MIR 13 261 -1 534 269 43 21 chr6 47794028 47794214 -134621028 + MER117 DNA MER1_type 4 193 -4 367 271 104 64 chr6 47795057 47795203 -134620039 + MIR3 SINE MIR 7 158 -50 2647 56 0 0 chr6 47795212 47795515 -134619727 - AluY SINE Alu -8 303 1 221 196 18 0 chr6 47795543 47795599 -134619643 + CT-rich Low_complexity Low_complexity 3 59 0 862 162 95 62 chr6 47795906 47796116 -134619126 - MER20 DNA MER1_type -2 217 1 195 114 0 0 chr6 47796251 47796286 -134618956 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2261 85 0 18 chr6 47796288 47796571 -134618671 - AluSc SINE Alu -31 278 1 254 329 0 14 chr6 47797916 47797989 -134617253 + L2 LINE L2 3200 3271 -1 180 0 0 0 chr6 47798298 47798318 -134616924 + (TCC)n Simple_repeat Simple_repeat 2 21 0 324 0 0 0 chr6 47800766 47800802 -134614440 + (CA)n Simple_repeat Simple_repeat 1 36 0 325 270 70 43 chr6 47800831 47800946 -134614296 - MIR SINE MIR -116 146 29 345 164 0 0 chr6 47802164 47802219 -134613023 - L2 LINE L2 0 3272 3218 238 301 12 24 chr6 47802328 47802411 -134612831 - MIR3 SINE MIR -15 193 112 385 253 23 11 chr6 47802485 47802572 -134612670 + MIR3 SINE MIR 82 169 -39 2144 122 24 0 chr6 47802816 47803112 -134612130 - AluSg SINE Alu -5 305 3 2200 112 3 3 chr6 47803398 47803692 -134611550 - AluSq SINE Alu -19 294 1 1844 165 0 0 chr6 47803763 47804042 -134611200 + AluJo SINE Alu 21 299 -13 473 258 133 0 chr6 47804091 47804242 -134611000 + MIR SINE MIR 71 241 -21 2541 67 0 0 chr6 47805513 47805810 -134609432 - AluY SINE Alu -14 297 1 2145 114 0 10 chr6 47805810 47806108 -134609134 - AluSx SINE Alu -13 299 5 2492 74 3 0 chr6 47806117 47806414 -134608828 - AluSp SINE Alu -15 298 1 402 216 52 0 chr6 47806469 47806585 -134608657 - L1MC4a LINE L1 -1873 5935 5814 2156 142 7 0 chr6 47807756 47808066 -134607176 + AluSx SINE Alu 1 312 0 596 261 150 13 chr6 47808613 47808839 -134606403 + MIR SINE MIR 1 257 -5 478 292 35 99 chr6 47808910 47809194 -134606048 - L2 LINE L2 -87 3185 2920 238 298 0 0 chr6 47809213 47809270 -134605972 - L2 LINE L2 -2 3311 3255 391 263 69 31 chr6 47809270 47809430 -134605812 - MIR SINE MIR 0 262 97 2197 128 3 0 chr6 47810277 47810582 -134604660 - AluSx SINE Alu -6 306 1 443 236 18 18 chr6 47811976 47812086 -134603156 + MIR SINE MIR 47 156 -106 2147 139 3 0 chr6 47812915 47813224 -134602018 - AluSx SINE Alu 0 312 3 23 0 0 0 chr6 47813455 47813478 -134601764 + AT_rich Low_complexity Low_complexity 1 23 0 403 269 34 54 chr6 47816140 47816289 -134598953 + L2 LINE L2 3168 3313 0 370 223 167 19 chr6 47816288 47816468 -134598774 - MIR SINE MIR -16 246 36 * 441 213 131 16 chr6 47817414 47817573 -134597669 + MER5A DNA MER1_type 4 183 -6 2360 109 0 0 chr6 47817779 47818082 -134597160 + AluSx SINE Alu 1 303 -9 260 323 113 36 chr6 47819399 47819594 -134595648 - MIR SINE MIR -46 216 7 1116 132 0 0 chr6 47820510 47820668 -134594574 - AluSg/x SINE Alu -17 295 135 2335 98 0 3 chr6 47820668 47820965 -134594277 - AluSx SINE Alu -16 296 1 293 290 121 40 chr6 47821067 47821191 -134594051 + L2 LINE L2 3137 3270 -2 224 156 22 22 chr6 47822944 47822989 -134592253 + C-rich Low_complexity Low_complexity 1 45 0 200 266 191 11 chr6 47823394 47823488 -134591754 + MER5B DNA MER1_type 68 178 0 191 302 43 52 chr6 47823491 47823607 -134591635 - MIR3 SINE MIR -52 156 42 1460 11 6 0 chr6 47824365 47824539 -134590703 + (GA)n Simple_repeat Simple_repeat 2 176 0 282 242 0 0 chr6 47825412 47825478 -134589764 + G-rich Low_complexity Low_complexity 64 129 0 221 242 30 30 chr6 47825814 47825880 -134589362 + MIR SINE MIR 83 148 -114 244 213 33 16 chr6 47826950 47827011 -134588231 - MIR SINE MIR -64 144 83 471 245 39 0 chr6 47827223 47827325 -134587917 + L2 LINE L2 3205 3310 -3 346 248 301 0 chr6 47827324 47827437 -134587805 + MIR SINE MIR 9 155 -107 * 216 191 24 0 chr6 47827430 47827472 -134587770 - MIR SINE MIR -1 261 219 * 2194 129 3 3 chr6 47828116 47828419 -134586823 - AluJo SINE Alu -9 303 1 336 200 0 0 chr6 47828942 47829007 -134586235 - MER103 DNA DNA -54 112 48 1512 159 4 37 chr6 47829007 47829277 -134585965 + AluJo SINE Alu 35 295 -17 2254 115 3 13 chr6 47829279 47829592 -134585650 + AluSg SINE Alu 1 310 0 261 231 132 50 chr6 47829858 47829979 -134585263 + L2 LINE L2 3182 3312 -1 237 119 0 0 chr6 47830567 47830609 -134584633 + (CTG)n Simple_repeat Simple_repeat 1 42 0 1127 176 79 9 chr6 47831873 47832100 -134583142 + AluJo SINE Alu 24 266 -46 233 216 0 0 chr6 47832280 47832331 -134582911 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 191 345 0 0 chr6 47832413 47832468 -134582774 - L2 LINE L2 0 3272 3218 1673 167 10 3 chr6 47832586 47832699 -134582543 + AluSq SINE Alu 1 112 -201 1802 92 20 0 chr6 47832699 47832949 -134582293 - AluY SINE Alu -8 303 49 1673 167 10 3 chr6 47832949 47833134 -134582108 + AluSq SINE Alu 112 301 -12 232 240 184 16 chr6 47833139 47833264 -134581978 + Charlie2 DNA MER1_type 89 234 -2548 408 188 62 0 chr6 47833279 47833375 -134581867 + Charlie2 DNA MER1_type 2131 2232 -630 2327 185 65 18 chr6 47833555 47834154 -134581088 + Charlie2 DNA MER1_type 2236 2862 0 392 220 174 68 chr6 47834403 47834535 -134580707 + MER5A DNA MER1_type 44 189 0 463 357 36 78 chr6 47834905 47835292 -134579950 + L2 LINE L2 2897 3267 -5 246 337 22 0 chr6 47835446 47835538 -134579704 - L2 LINE L2 -258 3014 2921 934 198 35 0 chr6 47836014 47836186 -134579056 + MER5A DNA MER1_type 5 182 -7 239 130 72 116 chr6 47836192 47836261 -134578981 - MIR3 SINE MIR -37 171 106 216 271 0 0 chr6 47836268 47836327 -134578915 + L2 LINE L2 3254 3312 -1 1891 127 0 26 chr6 47836335 47836642 -134578600 + AluJb SINE Alu 13 311 -1 184 279 0 0 chr6 47837497 47837540 -134577702 + L2 LINE L2 3221 3263 -9 1763 167 46 15 chr6 47837716 47838040 -134577202 - MER58B DNA MER1_type -7 334 1 1436 204 98 0 chr6 47839500 47839907 -134575335 + AluJb SINE Alu 2 435 0 352 222 136 0 chr6 47839913 47839994 -134575248 + MIR SINE MIR 34 125 -83 259 250 26 26 chr6 47843869 47843945 -134571297 - L1ME LINE L1 -464 5706 5631 299 180 33 0 chr6 47843951 47844012 -134571230 + MLT2F LTR ERVL 1 63 -600 954 214 81 97 chr6 47844039 47844196 -134571046 + L1MC4a LINE L1 5670 5828 -1980 1888 155 0 3 chr6 47844196 47844520 -134570722 + AluJb SINE Alu 1 312 0 954 214 81 97 chr6 47844520 47844674 -134570568 + L1MC4a LINE L1 5828 5983 -1825 3334 191 19 14 chr6 47844674 47845322 -134569920 + MER82 DNA MER2_type 2 652 -1 954 214 81 97 chr6 47845322 47845513 -134569729 + L1MC4a LINE L1 5983 6165 -1643 2363 72 3 3 chr6 47845542 47845847 -134569395 - AluSp SINE Alu -8 305 1 861 118 15 0 chr6 47846155 47846291 -134568951 - FLAM_C SINE Alu 0 143 6 303 183 67 0 chr6 47846386 47846446 -134568796 - MER82 DNA MER2_type -120 533 470 6034 26 0 1 chr6 47846969 47847670 -134567572 - L1PA2 LINE L1 -1551 4595 3896 8064 11 0 0 chr6 47847672 47849236 -134566006 + L1PA2 LINE L1 4590 6155 0 437 306 73 69 chr6 47850038 47850217 -134565025 - L2 LINE L2 -3 3269 3092 2269 90 3 0 chr6 47850217 47850527 -134564715 + AluSq SINE Alu 1 311 -2 437 306 73 69 chr6 47850527 47850884 -134564358 - L2 LINE L2 -180 3092 2732 369 0 0 0 chr6 47850884 47850925 -134564317 + (TG)n Simple_repeat Simple_repeat 2 42 0 437 306 73 69 chr6 47850925 47850972 -134564270 - L2 LINE L2 -540 2732 2687 2058 128 0 22 chr6 47850972 47851291 -134563951 + AluSx SINE Alu 1 312 0 1220 211 96 17 chr6 47851346 47851702 -134563540 - MER58D DNA MER1_type 0 386 3 21 0 0 0 chr6 47852559 47852580 -134562662 + AT_rich Low_complexity Low_complexity 1 21 0 231 146 0 0 chr6 47852654 47852695 -134562547 + (T)n Simple_repeat Simple_repeat 1 41 0 267 305 110 0 chr6 47853023 47853141 -134562101 - MIR SINE MIR -82 180 50 195 42 0 0 chr6 47853436 47853460 -134561782 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2234 70 0 38 chr6 47853462 47853775 -134561467 - AluY SINE Alu -10 301 1 499 240 58 47 chr6 47853864 47854035 -134561207 + MIR SINE MIR 20 192 -70 299 244 35 35 chr6 47855757 47855843 -134559399 + MIR3 SINE MIR 85 170 -38 226 244 0 0 chr6 47855992 47856033 -134559209 + MIR SINE MIR 33 73 -135 2230 74 13 13 chr6 47856111 47856410 -134558832 - AluSg SINE Alu -11 299 1 185 67 0 133 chr6 47857514 47857559 -134557683 + L2 LINE L2 3016 3054 -218 260 95 24 0 chr6 47857672 47857714 -134557528 - L1MC1 LINE L1 -4 6329 6287 418 293 236 0 chr6 47858360 47858547 -134556695 - MIR SINE MIR -6 256 30 243 320 13 0 chr6 47858635 47858713 -134556529 + GA-rich Low_complexity Low_complexity 5 83 0 1314 271 68 57 chr6 47859393 47860074 -134555168 + L1MEd LINE L1 318 1009 -5110 2056 132 3 0 chr6 47860074 47860385 -134554857 - AluSx SINE Alu 0 312 1 1314 271 68 57 chr6 47860385 47860444 -134554798 + L1MEd LINE L1 1009 1066 -5053 932 126 0 0 chr6 47860453 47860588 -134554654 + AluSq/x SINE Alu 1 135 -178 1958 125 0 0 chr6 47860592 47860910 -134554332 + AluSx SINE Alu 5 322 0 537 178 0 0 chr6 47860921 47861011 -134554231 + FLAM_A SINE Alu 32 121 -21 344 89 36 0 chr6 47861011 47861067 -134554175 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 401 0 20 0 chr6 47861131 47861180 -134554062 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 623 258 70 35 chr6 47861334 47861621 -134553621 + L1MEd LINE L1 2400 2696 -3433 403 263 50 0 chr6 47861720 47861819 -134553423 + L2 LINE L2 3210 3313 0 250 314 32 77 chr6 47861948 47862104 -134553138 + L3 LINE CR1 1197 1345 -232 187 286 18 18 chr6 47862112 47862168 -134553074 + L3 LINE CR1 1504 1559 -18 344 345 73 0 chr6 47862827 47863004 -134552238 - L2 LINE L2 -3 3269 3080 884 221 109 31 chr6 47863110 47863141 -134552101 - MER5C DNA MER1_type -4 320 293 2183 95 0 0 chr6 47863141 47863458 -134551784 - AluSg SINE Alu 0 317 1 884 221 109 31 chr6 47863458 47863719 -134551523 - MER5C DNA MER1_type -31 293 4 558 323 67 47 chr6 47865055 47865457 -134549785 - L2 LINE L2 0 3313 2904 1820 126 43 7 chr6 47865562 47865863 -134549379 + AluJb SINE Alu 1 312 0 185 210 177 32 chr6 47866190 47866252 -134548990 + MIR SINE MIR 23 93 -169 502 218 85 4 chr6 47866575 47866719 -134548523 - MER20 DNA MER1_type -93 126 3 200 280 13 80 chr6 47866811 47866886 -134548356 + MIR SINE MIR 30 99 -109 312 267 151 14 chr6 47866968 47867114 -134548128 - MIR SINE MIR -36 226 61 196 253 53 53 chr6 47867309 47867384 -134547858 + MIR SINE MIR 118 192 -70 2269 105 0 0 chr6 47867926 47868232 -134547010 - AluSx SINE Alu -6 306 1 693 295 140 28 chr6 47868490 47868846 -134546396 + L2 LINE L2 2828 3223 -49 423 301 133 0 chr6 47868849 47868992 -134546250 - MER5B DNA MER1_type -9 169 8 3617 182 31 7 chr6 47869841 47870527 -134544715 + L1MB5 LINE L1 5436 6141 -33 2646 91 0 0 chr6 47870527 47870878 -134544364 + L1PA14 LINE L1 5805 6155 -6 3617 182 31 7 chr6 47870878 47870893 -134544349 + L1MB5 LINE L1 6141 6154 -20 310 254 59 51 chr6 47870955 47871073 -134544169 - MER5A DNA MER1_type -45 144 26 444 253 206 38 chr6 47871136 47871376 -134543866 - MIR SINE MIR -1 261 2 377 265 316 0 chr6 47871473 47871609 -134543633 + MER5A DNA MER1_type 11 189 0 403 176 0 12 chr6 47871621 47871706 -134543536 - MER3 DNA MER1_type 0 209 126 1443 168 87 3 chr6 47871707 47871993 -134543249 - AluJb SINE Alu -2 310 1 913 174 0 0 chr6 47872034 47872195 -134543047 - FRAM SINE Alu -12 164 4 653 102 30 13 chr6 47872195 47872305 -134542937 - MER3 DNA MER1_type -103 106 2 326 185 12 25 chr6 47872312 47872393 -134542849 - MER20 DNA MER1_type 0 219 140 1040 194 90 0 chr6 47872395 47872596 -134542646 + MER20 DNA MER1_type 1 219 0 991 256 97 43 chr6 47872960 47873311 -134541931 - L2 LINE L2 0 3313 2944 2461 58 0 7 chr6 47873413 47873721 -134541521 + AluY SINE Alu 1 306 -5 301 254 311 0 chr6 47873728 47873850 -134541392 - L2 LINE L2 -568 2746 2587 268 328 41 33 chr6 47874350 47874525 -134540717 + MIR SINE MIR 25 199 -63 194 265 197 0 chr6 47874669 47874786 -134540456 - L2 LINE L2 0 3272 3133 1138 250 180 19 chr6 47876385 47876801 -134538441 - L2 LINE L2 -2 3311 2829 379 279 106 30 chr6 47876817 47877054 -134538188 - L2 LINE L2 -193 3120 2866 1067 192 74 0 chr6 47877070 47877273 -134537969 + MER20 DNA MER1_type 2 219 0 1013 179 58 151 chr6 47878438 47878750 -134536492 + LTR8 LTR ERV1 1 256 -435 1752 172 78 67 chr6 47878809 47879245 -134535997 + LTR8A LTR ERV1 287 727 0 1729 156 0 0 chr6 47879279 47879571 -134535671 - AluJb SINE Alu 0 306 15 276 243 110 52 chr6 47879714 47879802 -134535440 - L1ME4a LINE L1 -188 5933 5833 2229 104 0 0 chr6 47879802 47880099 -134535143 + AluSx SINE Alu 1 297 -15 276 243 110 52 chr6 47880099 47880146 -134535096 - L1ME4a LINE L1 -288 5833 5790 1026 197 56 5 chr6 47880543 47880756 -134534486 + MER58A DNA MER1_type 1 224 0 821 298 85 27 chr6 47880848 47881026 -134534216 + MLT1J2 LTR MaLR 64 230 -220 869 195 66 22 chr6 47881026 47881252 -134533990 - MER106A DNA MER1_type 0 236 1 821 298 85 27 chr6 47881252 47881439 -134533803 + MLT1J2 LTR MaLR 230 450 0 1776 155 34 3 chr6 47881470 47881761 -134533481 + AluJb SINE Alu 1 300 -12 236 160 13 53 chr6 47881778 47881829 -134533413 + (TTATA)n Simple_repeat Simple_repeat 2 51 -22 2104 117 10 0 chr6 47881829 47882129 -134533113 - AluSx SINE Alu -9 303 1 236 160 13 53 chr6 47882129 47882152 -134533090 + (TTATA)n Simple_repeat Simple_repeat 51 73 0 23 0 0 0 chr6 47882134 47882157 -134533085 + AT_rich Low_complexity Low_complexity 1 23 0 * 412 301 85 94 chr6 47882354 47882437 -134532805 + HAL1 LINE L1 6 88 -2419 2051 92 7 16 chr6 47882437 47882740 -134532502 - AluSq SINE Alu -13 300 1 412 301 85 94 chr6 47882740 47883125 -134532117 + HAL1 LINE L1 88 470 -2037 340 260 159 47 chr6 47883166 47883462 -134531780 + HAL1 LINE L1 1740 2124 -383 596 220 59 118 chr6 47883474 47883778 -134531464 - MER102b DNA MER1_type -3 338 53 239 267 0 44 chr6 47883898 47883988 -134531254 + HAL1b LINE L1 745 830 -518 422 252 117 56 chr6 47884109 47884375 -134530867 + HAL1 LINE L1 2165 2446 -61 849 252 168 47 chr6 47884517 47884946 -134530296 - LTR33 LTR ERVL -39 482 2 2447 70 0 0 chr6 47885125 47885427 -134529815 - AluSg SINE Alu -8 302 1 204 333 0 0 chr6 47885995 47886055 -134529187 + L2 LINE L2 3189 3248 -24 5810 110 25 12 chr6 47886055 47887522 -134527720 + L1PA16 LINE L1 4356 5849 -317 1620 161 0 7 chr6 47887522 47887795 -134527447 + AluJb SINE Alu 1 271 -41 5810 110 25 12 chr6 47887795 47888118 -134527124 + L1PA16 LINE L1 5849 6166 0 228 261 24 93 chr6 47889200 47889371 -134525871 - MIR SINE MIR -54 154 40 320 293 0 0 chr6 47889393 47889468 -134525774 + L2 LINE L2 3237 3311 -2 374 326 53 8 chr6 47889490 47889622 -134525620 + MIR SINE MIR 104 241 -21 284 340 102 34 chr6 47889645 47889851 -134525391 - L2 LINE L2 -207 3106 2887 2034 137 0 9 chr6 47889924 47890239 -134525003 - AluSx SINE Alu 0 312 1 201 39 0 0 chr6 47890256 47890282 -134524960 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1610 138 0 0 chr6 47890282 47890535 -134524707 - L1PA13 LINE L1 -13 6150 5898 2089 105 3 0 chr6 47891639 47891933 -134523309 + AluY SINE Alu 1 295 -16 417 263 199 22 chr6 47892018 47892330 -134522912 + L1MC/D LINE L1 5255 5621 -2187 502 277 80 76 chr6 47892385 47892602 -134522640 + L1ME LINE L1 5486 5706 -415 1852 134 3 39 chr6 47892602 47892909 -134522333 - AluJb SINE Alu -16 296 1 502 277 80 76 chr6 47892909 47893005 -134522237 + L1ME LINE L1 5706 5800 -321 294 299 0 35 chr6 47893035 47893122 -134522120 + HAL1 LINE L1 1 84 -2423 181 115 0 0 chr6 47893656 47893682 -134521560 + MIR3 SINE MIR 171 196 -12 2109 118 0 0 chr6 47893875 47894172 -134521070 - AluSx SINE Alu -14 298 2 308 24 0 24 chr6 47895915 47895957 -134519285 + (CA)n Simple_repeat Simple_repeat 1 41 0 253 270 0 0 chr6 47895980 47896043 -134519199 - L1MC4 LINE L1 -1340 6702 6640 534 231 51 32 chr6 47897273 47897429 -134517813 - MIR SINE MIR -6 256 98 361 295 165 67 chr6 47897651 47897844 -134517398 + L2 LINE L2 3001 3232 -81 988 205 72 0 chr6 47897844 47898039 -134517203 + MER3 DNA MER1_type 1 209 0 361 295 165 67 chr6 47898039 47898130 -134517112 + L2 LINE L2 3232 3313 0 264 123 18 70 chr6 47898662 47898719 -134516523 + MIR SINE MIR 25 78 -130 190 356 35 9 chr6 47898774 47898889 -134516353 - L2 LINE L2 -5 3308 3191 311 318 51 62 chr6 47899413 47899687 -134515555 - L2 LINE L2 -85 3187 2917 562 278 34 17 chr6 47899695 47899867 -134515375 - MER5B DNA MER1_type 0 178 18 468 226 164 27 chr6 47899853 47899999 -134515243 + MER5A DNA MER1_type 18 183 -6 * 232 182 39 117 chr6 47900891 47900968 -134514274 + LTR67 LTR ERVL 81 151 -406 384 225 110 63 chr6 47901005 47901196 -134514046 + MLT1L LTR MaLR 407 606 -9 1156 141 0 0 chr6 47902532 47902695 -134512547 - FRAM SINE Alu -3 163 1 353 280 235 8 chr6 47903056 47903225 -134512017 + MIR SINE MIR 15 212 -50 492 283 9 0 chr6 47904144 47904257 -134510985 - MER81 DNA DNA 0 114 1 228 224 263 46 chr6 47904312 47904464 -134510778 - MER117 DNA MER1_type -2 195 11 716 289 206 16 chr6 47904478 47904501 -134510741 - L3 LINE CR1 -3 1574 1557 240 35 0 0 chr6 47904501 47904530 -134510712 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 716 289 206 16 chr6 47904530 47904870 -134510372 - L3 LINE CR1 -20 1557 1142 198 234 0 0 chr6 47906144 47906191 -134509051 + MIR SINE MIR 104 150 -112 508 302 186 0 chr6 47906237 47906409 -134508833 - MIR SINE MIR 0 262 59 840 289 101 11 chr6 47906663 47906940 -134508302 + L2 LINE L2 3010 3311 -2 186 43 0 0 chr6 47907250 47907273 -134507969 + (CA)n Simple_repeat Simple_repeat 1 23 0 417 169 14 0 chr6 47908627 47908698 -134506544 + MER81 DNA DNA 43 114 0 391 291 30 45 chr6 47909219 47909353 -134505889 - L2 LINE L2 0 3272 3141 247 250 12 24 chr6 47909395 47909479 -134505763 - L2 LINE L2 0 3313 3231 228 67 0 0 chr6 47910115 47910145 -134505097 + (CA)n Simple_repeat Simple_repeat 2 31 0 2255 109 3 0 chr6 47910172 47910483 -134504759 - AluSx SINE Alu 0 312 1 181 253 114 51 chr6 47910820 47910899 -134504343 + MIR SINE MIR 30 113 -95 483 260 33 53 chr6 47912155 47912305 -134502937 - MIR3 SINE MIR -47 161 15 207 69 0 0 chr6 47912893 47912922 -134502320 + (TC)n Simple_repeat Simple_repeat 2 30 0 237 33 0 0 chr6 47912922 47912952 -134502290 + (CA)n Simple_repeat Simple_repeat 1 30 0 1011 287 92 7 chr6 47912967 47913424 -134501818 + L1ME4a LINE L1 5380 5875 -246 661 248 128 90 chr6 47913520 47913932 -134501310 + MLT1J2 LTR MaLR 3 395 -51 1622 167 34 3 chr6 47913932 47914225 -134501017 - AluJb SINE Alu -10 302 1 661 248 128 90 chr6 47914225 47914271 -134500971 + MLT1J2 LTR MaLR 395 438 -8 233 298 75 44 chr6 47914689 47914917 -134500325 + L1ME4a LINE L1 5348 5582 -539 845 150 86 0 chr6 47914989 47915129 -134500113 + FRAM SINE Alu 23 174 -2 720 306 114 58 chr6 47915141 47915235 -134500007 + L1ME4a LINE L1 5636 5723 -398 1937 147 0 3 chr6 47915235 47915549 -134499693 + AluSq SINE Alu 1 313 0 720 306 114 58 chr6 47915549 47915901 -134499341 + L1ME4a LINE L1 5723 6107 -14 250 348 51 0 chr6 47916522 47916700 -134498542 - L1M4 LINE L1 -1227 4919 4733 306 350 63 0 chr6 47917285 47917508 -134497734 - L1M4 LINE L1 -2302 3844 3608 1514 198 23 65 chr6 47918182 47918499 -134496743 + MLT1A2 LTR MaLR 7 307 -67 2095 102 16 7 chr6 47918499 47918802 -134496440 - AluSq SINE Alu -7 306 1 1514 198 23 65 chr6 47918802 47918868 -134496374 + MLT1A2 LTR MaLR 307 374 0 2298 98 0 0 chr6 47918979 47919284 -134495958 + AluSg SINE Alu 1 305 -5 180 0 0 0 chr6 47920714 47920734 -134494508 + (T)n Simple_repeat Simple_repeat 1 20 0 2212 100 0 10 chr6 47921375 47921684 -134493558 + AluSc SINE Alu 2 307 -2 525 207 116 0 chr6 47922063 47922184 -134493058 - MIR SINE MIR 0 262 128 264 302 13 47 chr6 47922719 47922868 -134492374 + MLT1L LTR MaLR 439 582 -33 1648 199 25 14 chr6 47922936 47923293 -134491949 + MLT1A1 LTR MaLR 3 363 -2 206 162 54 54 chr6 47923333 47923407 -134491835 + T-rich Low_complexity Low_complexity 2 75 0 226 296 167 0 chr6 47923436 47923544 -134491698 + MIR3 SINE MIR 64 189 -19 721 227 77 50 chr6 47923680 47924137 -134491105 + LTR33 LTR ERVL 19 521 0 821 302 33 4 chr6 47925215 47925460 -134489782 + L2 LINE L2 2417 2668 -646 1539 178 162 80 chr6 47925469 47925895 -134489347 + MLT1C LTR MaLR 7 467 0 968 211 165 31 chr6 47925897 47926447 -134488795 + L2 LINE L2 2670 3307 -6 412 268 36 0 chr6 47926467 47926605 -134488637 - L2 LINE L2 -1293 2021 1879 552 254 158 10 chr6 47927461 47927661 -134487581 - MIR SINE MIR -9 253 21 199 268 141 42 chr6 47927654 47927796 -134487446 + L2 LINE L2 2553 2708 -606 * 190 289 48 48 chr6 47928147 47928230 -134487012 + L2 LINE L2 3146 3228 -44 404 242 189 33 chr6 47930903 47931056 -134484186 - MER5B DNA MER1_type 0 178 2 189 341 22 94 chr6 47931058 47931098 -134484144 - MIR3 SINE MIR -68 140 99 1918 132 20 0 chr6 47931098 47931402 -134483840 + AluSx SINE Alu 1 310 -2 189 341 22 94 chr6 47931402 47931499 -134483743 - MIR3 SINE MIR -109 99 13 237 134 90 90 chr6 47932239 47932306 -134482936 + L1ME4a LINE L1 5992 6058 -63 558 191 154 18 chr6 47932368 47932478 -134482764 + FLAM_A SINE Alu 1 125 -8 244 330 0 45 chr6 47933048 47933160 -134482082 - L2 LINE L2 -337 2977 2871 2225 105 0 0 chr6 47933830 47934136 -134481106 + AluSx SINE Alu 1 306 -6 294 284 0 25 chr6 47934296 47934377 -134480865 + LTR33 LTR ERVL 294 372 -149 206 359 28 9 chr6 47934647 47934753 -134480489 - L2 LINE L2 -222 3050 2943 440 310 30 50 chr6 47934822 47935022 -134480220 + MIR SINE MIR 16 211 -51 2138 94 29 10 chr6 47935181 47935316 -134479926 + AluSp SINE Alu 1 132 -181 2275 81 0 0 chr6 47935316 47935612 -134479630 + AluY SINE Alu 1 296 -15 2138 94 29 10 chr6 47935612 47935783 -134479459 + AluSp SINE Alu 132 313 0 2133 114 0 19 chr6 47935783 47936098 -134479144 + AluSc SINE Alu 1 309 0 711 220 133 9 chr6 47936253 47936532 -134478710 + LTR33 LTR ERVL 175 519 -2 1832 141 23 10 chr6 47936656 47936955 -134478287 + AluSx SINE Alu 1 303 -9 182 243 0 0 chr6 47937128 47937165 -134478077 + MIR SINE MIR 212 248 -14 * 234 204 23 0 chr6 47937135 47937179 -134478063 + L2 LINE L2 3264 3308 -5 322 359 42 0 chr6 47937452 47937594 -134477648 - L2 LINE L2 -1 3271 3124 2394 85 0 0 chr6 47938464 47938771 -134476471 - AluSc SINE Alu -2 307 1 2147 109 0 0 chr6 47938803 47939096 -134476146 - AluSq SINE Alu -20 293 1 2075 168 44 13 chr6 47939105 47939492 -134475750 - L1MB7 LINE L1 -23 6161 5763 655 226 132 13 chr6 47939801 47939960 -134475282 + MER45A DNA AcHobo 1 178 0 378 237 40 3 chr6 47940583 47940692 -134474550 - MIR3 SINE MIR -50 158 63 1676 157 3 14 chr6 47940765 47941059 -134474183 + AluJb SINE Alu 1 291 -21 250 254 18 0 chr6 47941411 47941466 -134473776 - L2 LINE L2 -1 3271 3216 * 981 257 152 21 chr6 47941464 47941481 -134473761 - L2 LINE L2 -18 3295 3282 1718 141 3 38 chr6 47941481 47941771 -134473471 - AluJb SINE Alu -32 280 1 981 257 152 21 chr6 47941771 47942357 -134472885 - L2 LINE L2 -31 3282 2625 395 314 69 0 chr6 47942341 47942500 -134472742 + MIR3 SINE MIR 30 199 -9 * 194 245 0 41 chr6 47942972 47943021 -134472221 + L2 LINE L2 3136 3182 -90 224 270 34 34 chr6 47943126 47943215 -134472027 + L2 LINE L2 3126 3214 -58 403 229 250 36 chr6 47943875 47944067 -134471175 - MIR SINE MIR 0 262 30 751 137 0 168 chr6 47944711 47944908 -134470334 - MER20 DNA MER1_type -55 164 1 1103 160 0 47 chr6 47944967 47945179 -134470063 + AluJo SINE Alu 99 300 -12 1727 248 65 76 chr6 47945712 47946479 -134468763 + L1MC4a LINE L1 5297 6055 -1753 1006 167 0 17 chr6 47946727 47946901 -134468341 - AluJb SINE Alu -7 305 135 1984 115 3 30 chr6 47946902 47947207 -134468035 - AluSq SINE Alu -16 297 1 828 110 76 0 chr6 47948006 47948124 -134467118 + AluSq/x SINE Alu 3 129 -183 259 77 26 0 chr6 47948135 47948174 -134467068 - AluSp SINE Alu -174 129 90 1047 142 6 0 chr6 47948233 47948402 -134466840 + AluSg/x SINE Alu 142 311 -1 887 168 24 67 chr6 47948792 47949000 -134466242 - MER20 DNA MER1_type -20 199 1 1390 186 80 0 chr6 47949728 47950020 -134465222 - AluJb SINE Alu 0 313 1 195 42 0 0 chr6 47950789 47950813 -134464429 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 226 260 160 27 chr6 47952947 47953097 -134462145 - MIR3 SINE MIR -6 202 33 376 285 97 27 chr6 47953950 47954136 -134461106 + L2 LINE L2 3084 3282 -31 204 97 0 0 chr6 47954152 47954183 -134461059 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 503 302 47 12 chr6 47954209 47954378 -134460864 + MIR SINE MIR 88 262 0 247 175 18 70 chr6 47954667 47954724 -134460518 - L2 LINE L2 -85 3187 3134 408 40 0 0 chr6 47954842 47954892 -134460350 + (CA)n Simple_repeat Simple_repeat 1 50 0 723 206 29 7 chr6 47954892 47955028 -134460214 + MER63A DNA MER1_type 67 205 -5 303 359 91 8 chr6 47955101 47955337 -134459905 - MIR SINE MIR -2 260 3 574 268 70 56 chr6 47955584 47955998 -134459244 + L1ME4a LINE L1 5698 6117 -4 274 267 111 11 chr6 47956433 47956523 -134458719 - MIR SINE MIR -65 143 45 21 57 0 0 chr6 47958423 47958458 -134456784 + AT_rich Low_complexity Low_complexity 1 35 0 567 246 58 64 chr6 47958486 47958643 -134456599 + MIR SINE MIR 2 155 -70 364 219 14 0 chr6 47960026 47960099 -134455143 + MIR SINE MIR 20 93 -169 220 330 64 21 chr6 47960548 47960642 -134454600 + L2 LINE L2 3216 3313 0 225 159 0 0 chr6 47960644 47960688 -134454554 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 215 281 93 2 chr6 47960861 47960956 -134454286 + MIR SINE MIR 33 135 -73 497 288 61 0 chr6 47963292 47963455 -134451787 - MIR SINE MIR -1 261 89 24 32 0 0 chr6 47963920 47963951 -134451291 + AT_rich Low_complexity Low_complexity 1 31 0 4758 221 58 65 chr6 47964565 47964655 -134450587 - L1MEc LINE L1 -947 5459 5370 2393 63 0 0 chr6 47964655 47964956 -134450286 - AluY SINE Alu -10 301 1 4758 221 58 65 chr6 47964956 47965168 -134450074 - L1MEc LINE L1 -1036 5370 5158 1327 188 3 67 chr6 47965168 47965482 -134449760 - AluJo SINE Alu -18 294 1 4758 221 58 65 chr6 47965482 47966635 -134448607 - L1MEc LINE L1 -1248 5158 4013 2278 91 0 0 chr6 47966635 47966933 -134448309 - AluSg SINE Alu -12 298 1 4758 221 58 65 chr6 47966933 47967178 -134448064 - L1MEc LINE L1 -2393 4013 3768 520 194 31 12 chr6 47967170 47967330 -134447912 - L1MEc LINE L1 -2946 3460 3298 * 276 149 0 0 chr6 47967342 47967389 -134447853 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 5256 81 5 253 chr6 47967392 47968896 -134446346 + SVA Other Other 1 1131 -255 261 0 0 0 chr6 47968896 47968925 -134446317 + (A)n Simple_repeat Simple_repeat 1 29 0 295 93 0 56 chr6 47968959 47969013 -134446229 - MLT1A2 LTR MaLR 0 374 324 4395 151 35 65 chr6 47969062 47969233 -134446009 - MLT1A1-int LTR MaLR -898 837 662 1669 166 0 11 chr6 47969233 47969537 -134445705 - AluJb SINE Alu 0 311 11 4395 151 35 65 chr6 47969537 47970225 -134445017 - MLT1A1-int LTR MaLR -1073 662 3 1407 192 56 53 chr6 47970226 47970549 -134444693 - MLT1A1 LTR MaLR -3 362 39 2774 243 70 14 chr6 47970561 47971477 -134443765 - L1MEc LINE L1 -3153 3253 2322 980 226 80 41 chr6 47971474 47971671 -134443571 - L1MEc LINE L1 -5022 1387 1199 * 2060 110 0 33 chr6 47971671 47971972 -134443270 + AluSg SINE Alu 1 291 -19 980 226 80 41 chr6 47971972 47972211 -134443031 - L1MEc LINE L1 -5210 1199 934 3398 92 5 2 chr6 47972250 47972697 -134442545 + MER41B-int LTR ERV1 5496 5943 -3 3673 121 7 2 chr6 47972698 47973242 -134442000 + MER41B LTR ERV1 1 547 -88 1957 206 57 28 chr6 47973779 47974216 -134441026 + MLT1C LTR MaLR 18 467 0 339 332 70 16 chr6 47974711 47974898 -134440344 + L2 LINE L2 2301 2497 -817 444 292 23 15 chr6 47975619 47975749 -134439493 - MIR SINE MIR -71 191 61 402 296 23 15 chr6 47975906 47976038 -134439204 + MIR SINE MIR 109 241 -21 1882 159 3 10 chr6 47976059 47976373 -134438869 + AluSx SINE Alu 1 312 0 625 289 40 20 chr6 47976589 47976790 -134438452 - MIR SINE MIR -45 217 13 294 305 140 6 chr6 47977483 47977647 -134437595 - MIR SINE MIR -47 215 30 183 219 133 105 chr6 47978111 47978216 -134437026 - MIR SINE MIR -79 129 22 337 197 33 0 chr6 47978746 47978807 -134436435 + L1MC4 LINE L1 6641 6703 -1339 303 356 0 0 chr6 47978801 47978888 -134436354 - L1MC4 LINE L1 -1339 6703 6617 * 2238 83 3 13 chr6 47978920 47979220 -134436022 - AluSx SINE Alu -11 301 5 420 290 35 35 chr6 47979366 47979535 -134435707 - L1M4 LINE L1 -1118 5028 4860 1627 155 44 0 chr6 47979552 47979843 -134435399 + AluJb SINE Alu 1 303 0 481 309 20 10 chr6 47980170 47980374 -134434868 - L1P LINE L1 -1908 4238 4033 250 258 61 15 chr6 47980534 47980600 -134434642 - L2 LINE L2 0 3272 3204 1472 184 3 27 chr6 47980699 47980992 -134434250 - AluJb SINE Alu -23 289 4 549 291 24 0 chr6 47981794 47981921 -134433321 - MIR SINE MIR -84 178 49 231 313 25 12 chr6 47982386 47982466 -134432776 + MIR3 SINE MIR 87 167 -41 2467 63 0 0 chr6 47982547 47982847 -134432395 - AluSp SINE Alu -13 300 1 540 92 0 13 chr6 47982867 47982943 -134432299 - U3 snRNA snRNA -142 75 1 237 264 0 42 chr6 47983071 47983143 -134432099 + Charlie4 DNA MER1_type 1888 1956 -5 1361 181 0 104 chr6 47983193 47983531 -134431711 + AluJo SINE Alu 5 307 -5 454 197 70 49 chr6 47983912 47983975 -134431267 + MER5A DNA MER1_type 45 105 -84 2290 79 0 0 chr6 47983975 47984267 -134430975 - AluSc SINE Alu -10 299 8 454 197 70 49 chr6 47984267 47984345 -134430897 + MER5A DNA MER1_type 105 189 0 420 292 106 80 chr6 47984360 47984709 -134430533 + L1M4 LINE L1 3104 3461 -2685 599 188 128 50 chr6 47985126 47985344 -134429898 + MER112 DNA MER1_type 1 235 -25 1345 273 114 34 chr6 47985349 47986525 -134428717 - L1MC/D LINE L1 -747 5399 4500 430 291 57 33 chr6 47986540 47986745 -134428497 - L1MC/D LINE L1 -1679 4467 4257 334 331 41 47 chr6 47986835 47987007 -134428235 - L1MC/D LINE L1 -2073 4073 3903 252 328 70 4 chr6 47987221 47987450 -134427792 - L1MC/D LINE L1 -2493 3653 3410 309 148 33 16 chr6 47988615 47988676 -134426566 - MER5A DNA MER1_type 0 189 128 287 156 31 0 chr6 47988719 47988783 -134426459 + CT-rich Low_complexity Low_complexity 2 67 0 2261 99 0 3 chr6 47988805 47989117 -134426125 - AluSq SINE Alu -2 311 1 276 193 105 0 chr6 47989125 47989182 -134426060 - MER5A DNA MER1_type -123 66 4 236 356 48 10 chr6 47990412 47990516 -134424726 - MIR3 SINE MIR -98 110 3 365 261 23 0 chr6 47990703 47990791 -134424451 + MIR3 SINE MIR 98 187 -21 22 70 0 0 chr6 47991065 47991108 -134424134 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr6 47991142 47991180 -134424062 + AT_rich Low_complexity Low_complexity 1 38 0 257 258 78 102 chr6 47991366 47991533 -134423709 - L3 LINE CR1 -44 1533 1371 842 265 23 30 chr6 47991533 47991797 -134423445 + MIR SINE MIR 1 262 0 444 190 20 177 chr6 47991813 47992038 -134423204 + MER112 DNA MER1_type 1 260 0 1694 156 11 3 chr6 47992038 47992320 -134422922 + AluSx SINE Alu 1 284 -28 236 51 0 26 chr6 47992320 47992359 -134422883 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 444 190 20 177 chr6 47992359 47992432 -134422810 + MER112 DNA MER1_type 170 253 -7 1960 123 0 22 chr6 47992432 47992750 -134422492 + AluSx SINE Alu 1 311 -1 1649 163 56 0 chr6 47992785 47993073 -134422169 + AluJb SINE Alu 1 304 -8 223 282 68 0 chr6 47993076 47993193 -134422049 - L3 LINE CR1 -219 1358 1234 2343 68 3 0 chr6 47993392 47993685 -134421557 - AluSp SINE Alu -19 294 1 190 314 0 14 chr6 47993694 47993764 -134421478 - L3 LINE CR1 -731 846 778 751 268 41 47 chr6 47994480 47994850 -134420392 - L1ME3A LINE L1 -212 5950 5587 821 174 56 19 chr6 47994850 47995011 -134420231 + MER46B DNA MER2_type 1 42 -194 510 124 20 37 chr6 47995024 47995133 -134420109 + Tigger4(Zombi) DNA MER2_type 237 2731 0 474 298 61 25 chr6 47995134 47995332 -134419910 - L1ME3A LINE L1 -582 5584 5380 201 216 216 27 chr6 47995436 47995510 -134419732 + L2 LINE L2 3185 3272 0 501 248 25 86 chr6 47995844 47996042 -134419200 - MIR SINE MIR -57 205 20 2285 78 7 7 chr6 47996076 47996385 -134418857 - AluSg SINE Alu -1 309 1 228 328 0 0 chr6 47997090 47997151 -134418091 + L2 LINE L2 3193 3253 -60 1037 218 37 0 chr6 47997173 47997389 -134417853 + MER58A DNA MER1_type 1 224 0 737 170 2 0 chr6 47997550 47997717 -134417525 + AluJo SINE Alu 1 134 -178 1634 168 29 0 chr6 47997821 47998095 -134417147 - AluJo SINE Alu -30 282 1 1988 136 3 0 chr6 47998099 47998393 -134416849 - AluJb SINE Alu -16 296 2 25 0 0 0 chr6 47998399 47998424 -134416818 + AT_rich Low_complexity Low_complexity 1 25 0 180 194 28 0 chr6 47999597 47999633 -134415609 + L2 LINE L2 3236 3272 0 696 241 195 39 chr6 48000217 48000741 -134414501 - L2 LINE L2 -7 3306 2720 2054 108 3 43 chr6 48001012 48001158 -134414084 + AluSx SINE Alu 1 151 -161 2150 81 7 13 chr6 48001158 48001456 -134413786 + AluSc SINE Alu 1 296 -13 2054 108 3 43 chr6 48001456 48001634 -134413608 + AluSx SINE Alu 151 312 0 207 287 0 32 chr6 48001812 48001906 -134413336 + GA-rich Low_complexity Low_complexity 4 94 0 837 264 72 8 chr6 48002540 48002775 -134412467 + MIR SINE MIR 3 252 -10 240 256 90 85 chr6 48002956 48003104 -134412138 + L1ME LINE L1 5676 5827 -294 2164 109 0 3 chr6 48003104 48003406 -134411836 + AluSx SINE Alu 1 301 -11 240 256 90 85 chr6 48003406 48003480 -134411762 + L1ME LINE L1 5827 5899 -222 352 311 21 129 chr6 48003480 48003907 -134411335 + L1MEc LINE L1 35 415 -5981 307 323 83 15 chr6 48004139 48004272 -134410970 + L1MEc LINE L1 610 751 -5362 1492 155 17 48 chr6 48004280 48004571 -134410671 + AluJo SINE Alu 1 282 -30 746 285 87 60 chr6 48004597 48005214 -134410028 + L1MEc LINE L1 1072 1712 -4684 387 0 0 0 chr6 48005214 48005257 -134409985 + (CA)n Simple_repeat Simple_repeat 1 43 0 746 285 87 60 chr6 48005257 48005366 -134409876 + L1MEc LINE L1 1712 1817 -4579 2288 84 0 10 chr6 48005391 48005700 -134409542 + AluSq SINE Alu 1 306 -7 1065 151 0 6 chr6 48005930 48006096 -134409146 + AluJb SINE Alu 119 283 -29 439 227 21 21 chr6 48006096 48006237 -134409005 + L1ME4a LINE L1 5641 5781 -340 2033 94 0 24 chr6 48006238 48006548 -134408694 + AluSc SINE Alu 1 303 0 272 163 0 0 chr6 48006559 48006602 -134408640 + L2 LINE L2 3262 3304 -9 2271 82 0 3 chr6 48006633 48006924 -134408318 + AluY SINE Alu 3 292 -19 382 281 12 5 chr6 48007024 48007205 -134408037 - MIR SINE MIR -1 261 2 422 211 146 0 chr6 48007207 48007330 -134407912 + L1ME4a LINE L1 5963 6103 -18 306 0 0 0 chr6 48007359 48007393 -134407849 + (TA)n Simple_repeat Simple_repeat 2 35 0 229 229 0 0 chr6 48007675 48007723 -134407519 - MIR SINE MIR -78 130 83 185 271 62 0 chr6 48008849 48008897 -134406345 - L2 LINE L2 -36 3236 3186 1100 127 0 0 chr6 48008918 48009076 -134406166 + AluSg/x SINE Alu 128 285 -25 783 203 141 10 chr6 48009122 48009314 -134405928 + MLT1A2 LTR MaLR 156 372 -2 311 323 222 20 chr6 48009327 48009525 -134405717 + L2 LINE L2 3031 3268 -4 507 294 111 0 chr6 48009788 48010023 -134405219 + MIR SINE MIR 2 262 0 354 259 93 14 chr6 48011199 48011338 -134403904 - L2 LINE L2 -20 3252 3103 309 202 154 39 chr6 48012415 48012519 -134402723 + MIR SINE MIR 102 217 -45 394 216 51 8 chr6 48012684 48012802 -134402440 + L1MC5 LINE L1 7835 8042 0 200 206 294 0 chr6 48013465 48013557 -134401685 - MIR SINE MIR -55 153 35 195 100 0 0 chr6 48013666 48013696 -134401546 + (T)n Simple_repeat Simple_repeat 1 30 0 624 271 287 39 chr6 48014016 48014475 -134400767 + L2 LINE L2 1431 1775 -1539 2104 113 7 0 chr6 48014475 48014776 -134400466 + AluSx SINE Alu 1 303 -9 624 271 287 39 chr6 48014776 48014831 -134400411 + L2 LINE L2 1775 1815 -1499 413 18 0 18 chr6 48014831 48014886 -134400356 + (CA)n Simple_repeat Simple_repeat 2 55 0 624 271 287 39 chr6 48014886 48015390 -134399852 + L2 LINE L2 1815 2193 -1121 2036 129 3 0 chr6 48015390 48015701 -134399541 - AluSx SINE Alu 0 312 1 624 271 287 39 chr6 48015701 48015819 -134399423 + L2 LINE L2 2193 2852 -462 350 311 123 50 chr6 48015904 48016164 -134399078 + L2 LINE L2 3034 3312 -1 1795 141 0 7 chr6 48016208 48016515 -134398727 + AluSx SINE Alu 1 305 0 2273 93 3 0 chr6 48017181 48017491 -134397751 - AluSx SINE Alu -1 311 1 220 260 117 0 chr6 48018107 48018184 -134397058 - MIR3 SINE MIR -12 196 111 184 148 0 56 chr6 48021744 48021798 -134393444 + (GGGGA)n Simple_repeat Simple_repeat 1 51 0 24 0 0 0 chr6 48021926 48021950 -134393292 + GC_rich Low_complexity Low_complexity 1 24 0 227 138 0 69 chr6 48022540 48022598 -134392644 + (GGGGA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr6 48022853 48022874 -134392368 + GC_rich Low_complexity Low_complexity 1 21 0 227 269 90 13 chr6 48023828 48023906 -134391336 + L2 LINE L2 2966 3049 -223 612 179 57 0 chr6 48024433 48024556 -134390686 + MIR SINE MIR 86 215 -47 1656 134 17 34 chr6 48024694 48024992 -134390250 + AluJo SINE Alu 1 293 -19 246 62 0 0 chr6 48025002 48025034 -134390208 + (GA)n Simple_repeat Simple_repeat 2 33 0 486 225 106 44 chr6 48025798 48025958 -134389284 - MIR SINE MIR -2 260 91 1650 135 3 81 chr6 48026002 48026336 -134388906 - AluJb SINE Alu -2 310 3 251 350 0 21 chr6 48026414 48026511 -134388731 + MIR SINE MIR 24 118 -144 343 237 119 77 chr6 48026601 48026989 -134388253 + L1MC5 LINE L1 7526 7929 -32 25 51 0 0 chr6 48027014 48027053 -134388189 + AT_rich Low_complexity Low_complexity 1 39 0 1557 177 14 0 chr6 48027132 48027415 -134387827 - AluJb SINE Alu -25 287 1 299 265 20 20 chr6 48029169 48029263 -134385979 - LTR33 LTR ERVL 0 521 428 438 235 59 10 chr6 48029263 48029365 -134385877 + MER45A DNA AcHobo 1 107 -71 658 219 0 22 chr6 48029368 48029505 -134385737 - AluJo SINE Alu -177 135 2 277 148 167 0 chr6 48029505 48029559 -134385683 + MER45A DNA AcHobo 105 167 -11 * 1478 275 23 43 chr6 48029557 48030000 -134385242 - LTR33 LTR ERVL -87 434 1 1197 178 35 0 chr6 48030711 48030941 -134384301 - L1MB5 LINE L1 0 6174 5937 536 0 0 15 chr6 48030943 48031008 -134384234 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1468 85 0 15 chr6 48031020 48031220 -134384022 - AluSq SINE Alu -47 266 70 259 65 0 0 chr6 48031528 48031559 -134383683 + Alu SINE Alu 6 36 -266 38 22 0 0 chr6 48032083 48032128 -134383114 + AT_rich Low_complexity Low_complexity 1 45 0 265 330 62 0 chr6 48032430 48032542 -134382700 - L3 LINE CR1 -147 1430 1312 199 345 0 23 chr6 48032627 48032714 -134382528 + L2 LINE L2 2695 2779 -535 1179 117 0 0 chr6 48032845 48033025 -134382217 + (TA)n Simple_repeat Simple_repeat 1 180 0 2039 114 7 0 chr6 48033026 48033315 -134381927 - AluSc SINE Alu -18 291 1 39 38 0 38 chr6 48033315 48033394 -134381848 + AT_rich Low_complexity Low_complexity 1 76 0 1126 150 73 0 chr6 48033453 48033673 -134381569 - L1MA9 LINE L1 0 6312 6077 200 294 0 15 chr6 48034141 48034209 -134381033 - MIR SINE MIR -56 206 140 244 315 41 0 chr6 48034263 48034336 -134380906 - MIR SINE MIR -131 131 56 580 231 53 53 chr6 48034764 48034933 -134380309 - MER69A DNA AcHobo -8 169 1 524 84 0 0 chr6 48035254 48035326 -134379916 + Alu SINE Alu 236 412 0 462 181 0 9 chr6 48035326 48035431 -134379811 + GA-rich Low_complexity Low_complexity 1 180 0 1482 241 59 88 chr6 48035451 48035651 -134379591 - L1M4 LINE L1 -816 5330 5126 2504 57 0 0 chr6 48035651 48035948 -134379294 - AluY SINE Alu -14 297 1 1482 241 59 88 chr6 48035948 48036126 -134379116 - L1M4 LINE L1 -1020 5126 4944 186 43 0 0 chr6 48036126 48036149 -134379093 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1522 190 3 55 chr6 48036158 48036469 -134378773 - AluJb SINE Alu -17 295 1 1482 241 59 88 chr6 48036469 48036752 -134378490 - L1M4 LINE L1 -1210 4936 4677 12524 203 16 9 chr6 48036852 48039533 -134375709 - L1 LINE L1 -911 5235 2535 603 183 58 0 chr6 48039501 48039621 -134375621 - L1PBa LINE L1 -5624 1239 1113 * 1157 168 5 23 chr6 48039601 48039815 -134375427 - L1PBa LINE L1 -6653 210 1 258 164 14 55 chr6 48039910 48039983 -134375259 - MSTA LTR MaLR -146 282 213 280 259 0 0 chr6 48039990 48040071 -134375171 + MLT1L LTR MaLR 523 603 -12 683 295 61 19 chr6 48040071 48040383 -134374859 - L1M4 LINE L1 -1968 4178 3854 812 91 64 0 chr6 48040416 48040526 -134374716 - FLAM_C SINE Alu -16 127 11 454 239 63 95 chr6 48040974 48041196 -134374046 - L1MC5 LINE L1 -397 7564 7350 905 212 25 89 chr6 48041226 48041551 -134373691 - L1MC5 LINE L1 -992 6969 6666 429 161 99 0 chr6 48041815 48041896 -134373346 - L1MEc LINE L1 -6273 123 35 198 0 0 0 chr6 48041903 48041925 -134373317 + (T)n Simple_repeat Simple_repeat 1 22 0 571 80 80 0 chr6 48041938 48042013 -134373229 + AluSg1 SINE Alu 2 82 -227 2230 70 0 0 chr6 48042049 48042319 -134372923 - AluY SINE Alu -27 284 15 1962 134 3 26 chr6 48043014 48043320 -134371922 - AluSx SINE Alu -13 299 1 303 260 8 41 chr6 48043486 48043548 -134371694 - L1ME4a LINE L1 -12 6109 6051 1555 188 13 26 chr6 48043548 48043851 -134371391 - AluJb SINE Alu -13 299 1 303 260 8 41 chr6 48043851 48043911 -134371331 - L1ME4a LINE L1 -70 6051 5991 1131 127 16 32 chr6 48044182 48044193 -134371049 + MER5A DNA MER1_type 3 13 -176 2271 109 0 0 chr6 48044193 48044497 -134370745 + AluSx SINE Alu 1 304 -8 1131 127 16 32 chr6 48044497 48044674 -134370568 + MER5A DNA MER1_type 13 188 -1 2181 116 0 7 chr6 48044775 48045078 -134370164 + AluSg SINE Alu 1 301 -9 732 305 96 36 chr6 48045392 48045928 -134369314 - L1ME4a LINE L1 -222 5948 5362 2238 228 66 50 chr6 48046269 48046634 -134368608 + MER20B DNA MER1_type 3 360 -423 315 0 0 0 chr6 48046634 48046669 -134368573 + (TTG)n Simple_repeat Simple_repeat 1 35 0 2238 228 66 50 chr6 48046669 48047030 -134368212 + MER20B DNA MER1_type 360 741 -42 201 280 0 86 chr6 48047047 48047140 -134368102 - MIR SINE MIR -129 133 49 721 262 45 23 chr6 48047209 48047256 -134367986 - MIR SINE MIR -1 261 217 1257 189 68 108 chr6 48047256 48047636 -134367606 + MLT1A1 LTR MaLR 1 365 0 721 262 45 23 chr6 48047636 48047809 -134367433 - MIR SINE MIR -45 217 36 1204 246 28 47 chr6 48048724 48048804 -134366438 + LTR16C LTR ERVL 177 257 -234 2015 137 0 3 chr6 48048804 48049096 -134366146 - AluSx SINE Alu -21 291 1 1204 246 28 47 chr6 48049096 48049336 -134365906 + LTR16C LTR ERVL 257 491 0 2041 100 40 17 chr6 48049641 48049941 -134365301 - AluSg SINE Alu -3 307 1 265 311 14 0 chr6 48050021 48050095 -134365147 + MER91 DNA MER1_type 48 122 -74 826 196 39 0 chr6 48050099 48050252 -134364990 - FRAM SINE Alu -7 169 11 766 285 32 102 chr6 48051761 48051929 -134363313 + MLT1J LTR MaLR 4 182 -329 2221 109 0 0 chr6 48051929 48052223 -134363019 + AluSx SINE Alu 1 294 -18 766 285 32 102 chr6 48052223 48052552 -134362690 + MLT1J LTR MaLR 182 466 -45 1185 239 23 55 chr6 48053469 48053752 -134361490 + MER46C DNA MER2_type 1 291 -47 387 0 0 0 chr6 48053752 48053795 -134361447 + (TG)n Simple_repeat Simple_repeat 2 44 0 1646 181 7 4 chr6 48053795 48054072 -134361170 - AluJo SINE Alu -34 278 1 1185 239 23 55 chr6 48054072 48054135 -134361107 + MER46C DNA MER2_type 289 337 -1 21 0 0 0 chr6 48054195 48054216 -134361026 + AT_rich Low_complexity Low_complexity 1 21 0 832 110 125 7 chr6 48054223 48054359 -134360883 - AluSp/q SINE Alu -6 307 156 2252 104 0 32 chr6 48054617 48054926 -134360316 - AluSx SINE Alu -13 299 1 349 226 65 0 chr6 48054947 48055040 -134360202 + L1ME4a LINE L1 6020 6118 -3 21 0 0 0 chr6 48055041 48055062 -134360180 + AT_rich Low_complexity Low_complexity 1 21 0 2242 107 0 13 chr6 48055698 48056015 -134359227 + AluSq SINE Alu 1 313 0 198 417 34 23 chr6 48056024 48056199 -134359043 - L3b LINE CR1 -16 1567 1391 2223 109 0 3 chr6 48056257 48056551 -134358691 + AluSq SINE Alu 1 293 -20 1468 200 0 0 chr6 48056602 48056852 -134358390 - AluJo SINE Alu -62 250 1 296 237 105 40 chr6 48057778 48057932 -134357310 + MLT1K LTR MaLR 375 565 -50 1416 209 110 56 chr6 48058297 48058652 -134356590 - MLT1A2 LTR MaLR 0 374 1 2316 87 0 22 chr6 48058704 48058738 -134356504 - AluSg SINE Alu 0 310 277 243 0 0 0 chr6 48058738 48058765 -134356477 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2316 87 0 22 chr6 48058765 48059042 -134356200 - AluSg SINE Alu -33 277 6 250 281 35 9 chr6 48059200 48059314 -134355928 - L1MC4a LINE L1 -1850 5958 5842 615 251 65 27 chr6 48059567 48059830 -134355412 - L1ME3A LINE L1 -235 5935 5663 355 356 152 10 chr6 48059833 48060142 -134355100 - L1MC4a LINE L1 -2029 5779 5427 956 206 30 134 chr6 48060148 48060513 -134354729 + L1MC4a LINE L1 5619 5945 -1863 1541 167 60 20 chr6 48060527 48060827 -134354415 - AluJo SINE Alu 0 312 1 1096 151 0 17 chr6 48060830 48061009 -134354233 - AluSq SINE Alu -3 310 135 432 262 16 8 chr6 48061032 48061158 -134354084 - MLT1I LTR MaLR -6 403 277 * 802 259 73 52 chr6 48061157 48061413 -134353829 + MLT1L LTR MaLR 190 456 -159 1995 86 65 3 chr6 48061413 48061705 -134353537 - AluSg SINE Alu 0 310 1 802 259 73 52 chr6 48061705 48061776 -134353466 + MLT1L LTR MaLR 456 524 -91 5332 106 7 6 chr6 48061786 48062511 -134352731 - L1PB1 LINE L1 -3 6148 5423 481 236 36 0 chr6 48062612 48062722 -134352520 + L1MC/D LINE L1 5506 5619 -2189 1010 113 6 0 chr6 48062757 48062916 -134352326 - L1P LINE L1 -738 5413 5254 458 136 0 0 chr6 48112920 48112979 -134302263 - AluS SINE Alu -248 62 4 33 43 0 0 chr6 48113346 48113393 -134301849 + AT_rich Low_complexity Low_complexity 1 47 0 2462 68 3 19 chr6 48113727 48114036 -134301206 + AluY SINE Alu 1 304 -7 196 157 59 0 chr6 48115173 48115224 -134300018 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 180 161 0 0 chr6 48115325 48115356 -134299886 - MIR SINE MIR -8 254 224 2201 123 0 0 chr6 48116221 48116529 -134298713 - AluSx SINE Alu -4 308 1 359 287 127 27 chr6 48116559 48116709 -134298533 - MIR SINE MIR -87 175 11 785 161 0 0 chr6 48116981 48117129 -134298113 + FLAM_A SINE Alu 5 152 0 262 214 124 90 chr6 48117317 48117462 -134297780 + L1MEd LINE L1 597 746 -5373 478 231 51 19 chr6 48117513 48117669 -134297573 + LTR65 LTR ERV1 3 163 -506 276 340 43 0 chr6 48117850 48117991 -134297251 + LTR65 LTR ERV1 517 663 -6 826 209 87 20 chr6 48118145 48118341 -134296901 - MIR SINE MIR -43 219 11 709 241 59 55 chr6 48118435 48118550 -134296692 - L2 LINE L2 0 3313 3200 2326 99 0 0 chr6 48118550 48118844 -134296398 - AluSx SINE Alu -17 295 2 709 241 59 55 chr6 48118844 48118965 -134296277 - L2 LINE L2 -113 3200 3076 1022 150 24 0 chr6 48118969 48119136 -134296106 + AluJb SINE Alu 137 307 -5 2851 217 141 33 chr6 48119138 48119365 -134295877 - L2 LINE L2 -227 3086 2885 297 0 0 0 chr6 48119365 48119398 -134295844 + (TG)n Simple_repeat Simple_repeat 1 33 0 2851 217 141 33 chr6 48119398 48120144 -134295098 - L2 LINE L2 -428 2885 2006 294 236 71 57 chr6 48120144 48120393 -134294849 + L1MEd LINE L1 934 1215 -4904 722 219 59 12 chr6 48120412 48120581 -134294661 - LTR16A LTR ERVL -7 443 267 604 204 0 0 chr6 48120586 48120684 -134294558 + MER81 DNA DNA 17 114 0 613 309 0 58 chr6 48120684 48120907 -134294335 - LTR16A LTR ERVL -174 276 67 5597 89 16 34 chr6 48121002 48121826 -134293416 + L1PB1 LINE L1 5342 6150 -1 1837 233 21 17 chr6 48121827 48122295 -134292947 + L1MEc LINE L1 673 1142 -5254 429 284 13 39 chr6 48122271 48122426 -134292816 + L1MEc LINE L1 2492 2642 -3573 * 29 47 0 0 chr6 48122438 48122481 -134292761 + AT_rich Low_complexity Low_complexity 1 43 0 321 313 42 0 chr6 48122544 48122640 -134292602 + L2 LINE L2 3154 3253 -19 3945 176 50 8 chr6 48123435 48124174 -134291068 - L1MB8 LINE L1 0 6178 5409 1789 171 0 55 chr6 48124201 48124378 -134290864 - AluJo SINE Alu -3 309 157 2021 112 3 43 chr6 48124378 48124683 -134290559 - AluSc SINE Alu -11 298 6 1789 171 0 55 chr6 48124683 48124832 -134290410 - AluJo SINE Alu -155 157 1 1150 239 83 77 chr6 48124955 48125507 -134289735 - MLT1H1 LTR MaLR 0 555 3 880 211 12 0 chr6 48125547 48125708 -134289534 + AluJb SINE Alu 127 289 -23 1217 163 0 0 chr6 48126864 48127036 -134288206 + FAM SINE Alu 4 175 0 1932 171 0 7 chr6 48127477 48127775 -134287467 + AluSx SINE Alu 1 296 -16 767 181 15 15 chr6 48128324 48128457 -134286785 - FLAM_A SINE Alu 0 133 1 62 14 0 0 chr6 48128772 48128841 -134286401 + AT_rich Low_complexity Low_complexity 1 69 0 255 225 46 35 chr6 48128845 48129018 -134286224 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 203 205 49 25 chr6 48129032 48129154 -134286088 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 238 205 51 26 chr6 48129168 48129324 -134285918 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 1790 125 92 21 chr6 48129589 48129925 -134285317 - THE1C LTR MaLR -15 360 1 360 233 90 8 chr6 48130032 48130175 -134285067 - MLT1L LTR MaLR -13 602 340 248 310 0 0 chr6 48130690 48130748 -134284494 - MER91B DNA MER1_type -131 59 2 266 211 114 24 chr6 48130755 48130878 -134284364 - L1ME4a LINE L1 -63 6058 5925 28 61 0 0 chr6 48130898 48130947 -134284295 + AT_rich Low_complexity Low_complexity 1 49 0 2000 146 0 7 chr6 48130966 48131275 -134283967 - AluSx SINE Alu -5 307 1 1799 175 3 0 chr6 48131351 48131637 -134283605 + AluJb SINE Alu 1 287 -25 531 169 77 15 chr6 48131671 48131801 -134283441 + LTR33 LTR ERVL 8 145 -376 284 179 167 36 chr6 48132051 48132135 -134283107 + MLT1I LTR MaLR 278 372 -37 299 235 0 37 chr6 48132347 48132428 -134282814 + LTR33 LTR ERVL 442 519 -2 793 188 85 12 chr6 48132436 48132601 -134282641 - MIR SINE MIR -77 185 9 21 0 0 0 chr6 48132676 48132697 -134282545 + AT_rich Low_complexity Low_complexity 1 21 0 285 254 100 9 chr6 48132728 48132838 -134282404 - L1ME4a LINE L1 -394 5727 5608 1315 167 5 0 chr6 48133043 48133258 -134281984 - AluJb SINE Alu -12 300 85 391 208 88 40 chr6 48133380 48133505 -134281737 - L1ME4a LINE L1 -194 5927 5797 2176 152 14 23 chr6 48133541 48133890 -134281352 - MER7A DNA MER2_type 0 346 3 2148 109 3 0 chr6 48133899 48134224 -134281018 - AluSx SINE Alu 0 326 1 419 306 62 28 chr6 48134484 48134807 -134280435 - L1ME4a LINE L1 -1217 4929 4596 2388 78 3 0 chr6 48134882 48135177 -134280065 + AluSq SINE Alu 1 296 -17 484 259 56 0 chr6 48135317 48135425 -134279817 + MER81 DNA DNA 1 114 0 610 252 150 10 chr6 48136160 48136454 -134278788 - L1ME4a LINE L1 -32 6089 5755 638 277 55 42 chr6 48136560 48136661 -134278581 + MIR SINE MIR 12 110 -152 215 48 0 48 chr6 48136661 48136703 -134278539 + (TTTTG)n Simple_repeat Simple_repeat 4 180 0 1793 118 3 51 chr6 48136703 48136999 -134278243 - AluJo SINE Alu -1 323 1 638 277 55 42 chr6 48136999 48137134 -134278108 + MIR SINE MIR 109 252 -10 537 178 20 0 chr6 48137686 48137787 -134277455 - MER5B DNA MER1_type -74 104 2 790 128 128 0 chr6 48137808 48137933 -134277309 + AluJo SINE Alu 1 141 -171 21 57 0 0 chr6 48137950 48137985 -134277257 + AT_rich Low_complexity Low_complexity 1 35 0 2553 45 0 26 chr6 48137985 48138297 -134276945 + AluY SINE Alu 1 304 -7 949 175 31 14 chr6 48138520 48138743 -134276499 - Charlie5 DNA MER1_type -49 2563 2337 2073 132 13 7 chr6 48138768 48139071 -134276171 + AluSx SINE Alu 1 305 -7 1862 136 49 0 chr6 48139262 48139549 -134275693 - AluJb SINE Alu -11 301 1 228 239 112 15 chr6 48139662 48139796 -134275446 - L1ME4a LINE L1 -1 6120 5974 509 233 45 34 chr6 48139796 48139972 -134275270 - MER5B DNA MER1_type 0 178 1 548 247 156 0 chr6 48139980 48140134 -134275108 - MER5A DNA MER1_type 0 189 12 259 339 10 26 chr6 48140150 48140342 -134274900 - L1ME4a LINE L1 -165 5956 5768 271 231 0 0 chr6 48140605 48140657 -134274585 - MIR SINE MIR -83 179 128 2179 115 0 31 chr6 48140835 48141157 -134274085 - AluSq SINE Alu -1 312 1 587 267 72 32 chr6 48142461 48142712 -134272530 - MIR SINE MIR 0 262 2 227 244 0 0 chr6 48143349 48143390 -134271852 + polypyrimidine Low_complexity Low_complexity 1 41 0 264 306 25 31 chr6 48143587 48143747 -134271495 + L1MC/D LINE L1 3577 3735 -2411 2247 93 21 0 chr6 48143756 48144046 -134271196 + AluSx SINE Alu 1 296 -16 555 267 44 59 chr6 48144059 48144400 -134270842 + L1MC/D LINE L1 3914 4249 -1897 1629 225 120 100 chr6 48144462 48144645 -134270597 + HAL1 LINE L1 181 359 -2148 1598 201 14 0 chr6 48144645 48144923 -134270319 + AluJo SINE Alu 1 282 -30 1629 225 120 100 chr6 48144923 48145105 -134270137 + HAL1 LINE L1 359 536 -1971 2230 114 0 10 chr6 48145105 48145389 -134269853 + AluSg SINE Alu 2 283 -198 240 35 0 0 chr6 48145389 48145418 -134269824 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 2230 114 0 10 chr6 48145418 48145616 -134269626 + AluSg SINE Alu 283 481 0 1629 225 120 100 chr6 48145616 48146006 -134269236 + HAL1 LINE L1 536 954 -1553 225 147 0 0 chr6 48146040 48146074 -134269168 - MLT2B1 LTR ERVL -8 406 373 246 128 0 0 chr6 48146076 48146115 -134269127 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 189 0 0 0 chr6 48146141 48146162 -134269080 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1395 181 77 67 chr6 48146172 48146581 -134268661 - MLT2B1 LTR ERVL -43 371 1 2661 244 81 40 chr6 48146581 48147533 -134267709 + HAL1 LINE L1 974 1974 -533 2477 43 0 23 chr6 48147533 48147835 -134267407 + AluY SINE Alu 1 295 -16 2661 244 81 40 chr6 48147835 48147930 -134267312 + HAL1 LINE L1 1974 2064 -443 364 321 83 36 chr6 48147941 48148102 -134267140 + L1MC/D LINE L1 4735 4887 -1259 2786 26 0 0 chr6 48148102 48148413 -134266829 - AluY SINE Alu 0 311 1 364 321 83 36 chr6 48148413 48148553 -134266689 + L1MC/D LINE L1 4887 5050 -1096 781 291 58 56 chr6 48148752 48149181 -134266061 + L1MC/D LINE L1 5267 5694 -477 2030 121 3 0 chr6 48149445 48149755 -134265487 - AluSx SINE Alu 0 311 1 873 194 228 56 chr6 48149820 48149945 -134265297 - MER96B DNA MER1_type 0 417 315 1913 151 11 0 chr6 48149945 48150229 -134265013 - AluJo SINE Alu -21 291 5 873 194 228 56 chr6 48150229 48150458 -134264784 - MER96B DNA MER1_type -102 315 2 212 59 29 0 chr6 48150937 48150971 -134264271 + (TG)n Simple_repeat Simple_repeat 2 36 0 757 175 0 0 chr6 48150971 48151091 -134264151 - AluSx SINE Alu -16 296 177 891 104 0 0 chr6 48151092 48151207 -134264035 - AluSx SINE Alu -197 115 1 773 190 7 7 chr6 48151271 48151413 -134263829 - MIR SINE MIR -69 193 52 2406 88 3 0 chr6 48151465 48151770 -134263472 + AluSq SINE Alu 1 306 -7 1138 154 5 0 chr6 48151864 48152052 -134263190 - MER53 DNA DNA 0 189 1 265 203 162 0 chr6 48152064 48152138 -134263104 + HERVL LTR ERVL 2586 2671 -2983 2098 125 0 32 chr6 48154327 48154638 -134260604 - AluSx SINE Alu -11 301 1 2567 61 0 13 chr6 48154970 48155282 -134259960 + AluY SINE Alu 1 308 -3 3618 242 64 36 chr6 48155476 48156640 -134258602 + HAL1 LINE L1 630 1826 -681 1409 132 44 37 chr6 48156686 48156877 -134258365 - MER69 DNA AcHobo 0 2526 2331 2250 71 50 3 chr6 48156877 48157160 -134258082 - AluSq SINE Alu -17 296 1 1409 132 44 37 chr6 48157160 48157240 -134258002 - MER69 DNA AcHobo -195 2331 2253 226 272 49 0 chr6 48157268 48157349 -134257893 - L1MC4 LINE L1 -18 8024 7940 1724 147 57 0 chr6 48157350 48157629 -134257613 + AluJb SINE Alu 1 295 -17 673 169 154 0 chr6 48157642 48157772 -134257470 - FRAM SINE Alu -11 165 16 1140 227 92 1 chr6 48157802 48158156 -134257086 - MER69 DNA AcHobo -2109 417 1 307 235 59 0 chr6 48158158 48158226 -134257016 + HAL1 LINE L1 1843 1914 -593 1076 139 12 0 chr6 48158234 48158400 -134256842 + AluSg/x SINE Alu 127 294 -16 474 18 0 0 chr6 48158401 48158456 -134256786 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 1850 151 7 7 chr6 48158470 48158762 -134256480 - AluJb SINE Alu -20 292 1 227 262 49 0 chr6 48158763 48158824 -134256418 + HAL1 LINE L1 1914 1977 -530 21 71 0 0 chr6 48158908 48158950 -134256292 + AT_rich Low_complexity Low_complexity 1 42 0 656 191 84 49 chr6 48159164 48159389 -134255853 + pTR5 LTR ERV1 742 974 -1464 3242 143 65 42 chr6 48159497 48160065 -134255177 + LTR12 LTR ERV1 1 581 -133 1561 181 7 4 chr6 48160163 48160434 -134254808 + AluSq SINE Alu 1 272 -41 189 0 0 0 chr6 48160440 48160461 -134254781 + (GA)n Simple_repeat Simple_repeat 2 22 0 1869 232 85 25 chr6 48160697 48160839 -134254403 - MLT1H LTR MaLR 0 549 417 3591 80 105 110 chr6 48160839 48161476 -134253766 + MER51A LTR ERV1 1 634 0 1869 232 85 25 chr6 48161476 48161850 -134253392 - MLT1H LTR MaLR -132 417 2 203 275 0 50 chr6 48161851 48161890 -134253352 + MIR SINE MIR 85 120 -142 2171 102 41 3 chr6 48161890 48162185 -134253057 - AluSx SINE Alu -6 306 1 203 275 0 50 chr6 48162185 48162225 -134253017 + MIR SINE MIR 120 160 -102 977 306 40 49 chr6 48162325 48162603 -134252639 + L2 LINE L2 2886 3160 -153 1977 159 0 7 chr6 48162603 48162899 -134252343 - AluJb SINE Alu -18 294 1 977 306 40 49 chr6 48162899 48163048 -134252194 + L2 LINE L2 3160 3309 -4 1682 184 11 0 chr6 48163426 48163732 -134251510 - AluJb SINE Alu 0 309 1 772 211 113 19 chr6 48163786 48164042 -134251200 + HAL1 LINE L1 1224 1503 -1004 443 274 51 0 chr6 48164147 48164264 -134250978 + L2 LINE L2 3191 3313 0 2229 122 6 0 chr6 48164302 48164613 -134250629 - AluSq SINE Alu 0 313 1 1915 144 0 46 chr6 48164695 48165022 -134250220 + AluSx SINE Alu 1 312 0 186 43 0 0 chr6 48165066 48165089 -134250153 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1953 245 170 30 chr6 48165092 48165383 -134249859 - HAL1 LINE L1 -1468 1039 790 2281 89 3 0 chr6 48165383 48165665 -134249577 - AluSq SINE Alu -14 299 17 1953 245 170 30 chr6 48165665 48166186 -134249056 - HAL1 LINE L1 -1717 790 113 763 301 26 9 chr6 48166235 48166464 -134248778 + L1MEd LINE L1 243 475 -5644 1403 122 0 0 chr6 48166468 48166649 -134248593 + AluSx SINE Alu 1 181 -131 1024 135 0 0 chr6 48166676 48166817 -134248425 + AluSg/x SINE Alu 153 293 -17 1783 170 0 10 chr6 48167085 48167379 -134247863 - AluJo SINE Alu -21 291 1 1872 140 19 7 chr6 48168157 48168464 -134246778 - AluJo SINE Alu -1 311 1 219 200 67 0 chr6 48168713 48168758 -134246484 - L2 LINE L2 0 3313 3266 345 183 0 0 chr6 48168768 48168828 -134246414 - L2 LINE L2 -24 3289 3230 2298 94 3 0 chr6 48170661 48170969 -134244273 - AluSp SINE Alu -4 309 1 2258 86 10 10 chr6 48171496 48171797 -134243445 - AluSx SINE Alu -11 301 1 772 153 0 40 chr6 48171835 48171959 -134243283 - FRAM SINE Alu -11 165 47 2151 93 0 4 chr6 48172559 48172837 -134242405 + AluSc SINE Alu 2 278 -31 1501 186 47 7 chr6 48172863 48172983 -134242259 + AluJo SINE Alu 1 115 -197 183 42 0 0 chr6 48172983 48173007 -134242235 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 1501 186 47 7 chr6 48173007 48173165 -134242077 + AluJo SINE Alu 115 290 -22 3855 159 67 46 chr6 48173244 48173557 -134241685 - L1MB8 LINE L1 0 6178 5873 2541 65 0 3 chr6 48173557 48173863 -134241379 + AluY SINE Alu 1 305 -6 3855 159 67 46 chr6 48173863 48173887 -134241355 - L1MB8 LINE L1 -305 5873 5851 1220 136 113 5 chr6 48173887 48174100 -134241142 - MER46A DNA MER2_type 0 236 1 3855 159 67 46 chr6 48174100 48174659 -134240583 - L1MB8 LINE L1 -327 5851 5262 2233 107 0 0 chr6 48175349 48175640 -134239602 - AluSx SINE Alu -19 293 3 1956 154 3 6 chr6 48175783 48176094 -134239148 - AluJb SINE Alu -2 310 1 1346 33 0 0 chr6 48176225 48176376 -134238866 + AluY SINE Alu 155 305 -6 2083 89 22 4 chr6 48176595 48176866 -134238376 + AluSx SINE Alu 27 302 -10 201 39 0 0 chr6 48177157 48177183 -134238059 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 25 0 0 0 chr6 48177567 48177592 -134237650 + AT_rich Low_complexity Low_complexity 1 25 0 708 94 254 36 chr6 48177634 48177772 -134237470 - L1PA16 LINE L1 -1 6165 5998 1792 123 54 4 chr6 48177825 48178086 -134237156 - AluSx SINE Alu -10 302 29 962 270 50 0 chr6 48179411 48179670 -134235572 - L1MC4 LINE L1 -1039 7003 6732 2254 108 3 10 chr6 48179800 48180107 -134235135 - AluSx SINE Alu -7 305 1 2281 190 344 41 chr6 48180592 48181522 -134233720 - L1MC4 LINE L1 -372 7670 6459 2096 124 30 0 chr6 48181632 48181930 -134233312 - AluSx SINE Alu -5 307 1 297 255 0 75 chr6 48182015 48182121 -134233121 - MER77 LTR ERV1 -467 138 41 188 320 0 0 chr6 48182135 48182185 -134233057 + MIR SINE MIR 201 250 -12 871 139 15 0 chr6 48183038 48183175 -134232067 - L1MA4 LINE L1 -6 6294 6156 1256 96 54 0 chr6 48183902 48184068 -134231174 + AluSp SINE Alu 113 287 -26 336 24 0 0 chr6 48184068 48184109 -134231133 + (CA)n Simple_repeat Simple_repeat 2 42 0 2828 121 36 5 chr6 48184153 48184567 -134230675 - MSTA LTR MaLR -1 427 1 1747 162 54 0 chr6 48184639 48184917 -134230325 - AluJo SINE Alu -19 293 1 603 273 80 40 chr6 48184976 48185251 -134229991 - L1MC4 LINE L1 -1898 5910 5625 1183 190 89 69 chr6 48185611 48185657 -134229585 - L1ME2 LINE L1 -10 6223 6179 2246 72 7 14 chr6 48185657 48185950 -134229292 - AluSc SINE Alu -18 291 1 1183 190 89 69 chr6 48185950 48186113 -134229129 - L1ME2 LINE L1 -54 6179 6021 1646 175 26 36 chr6 48186113 48186289 -134228953 - AluJb SINE Alu -2 310 137 2168 135 0 3 chr6 48186289 48186600 -134228642 - AluSx SINE Alu -2 310 1 1646 175 26 36 chr6 48186600 48186732 -134228510 - AluJb SINE Alu -175 137 5 1183 190 89 69 chr6 48186732 48186968 -134228274 - L1ME2 LINE L1 -212 6021 5768 2659 46 0 0 chr6 48187111 48187413 -134227829 + AluY SINE Alu 1 302 -9 999 206 44 4 chr6 48187519 48187747 -134227495 - L1ME2 LINE L1 -461 5772 5536 21 36 0 0 chr6 48187955 48187983 -134227259 + AT_rich Low_complexity Low_complexity 1 28 0 4650 233 110 26 chr6 48187997 48188343 -134226899 - L1ME2 LINE L1 -733 5500 5184 1928 111 11 0 chr6 48188343 48188635 -134226607 - AluSp SINE Alu 0 316 22 2138 108 20 7 chr6 48188637 48188933 -134226309 - AluSx SINE Alu -12 300 1 4650 233 110 26 chr6 48188933 48189102 -134226140 - L1ME2 LINE L1 -1049 5184 5031 2285 96 7 3 chr6 48189102 48189404 -134225838 - AluSp SINE Alu -8 305 3 4650 233 110 26 chr6 48189404 48191192 -134224050 - L1ME2 LINE L1 -1202 5031 2809 1491 188 45 28 chr6 48191192 48191480 -134223762 + AluJo SINE Alu 1 293 -19 4650 233 110 26 chr6 48191480 48191566 -134223676 - L1ME2 LINE L1 -3424 2809 2732 609 233 70 95 chr6 48191583 48191932 -134223310 - L1ME2 LINE L1 -4142 2254 1919 2443 71 7 0 chr6 48191932 48192229 -134223013 - AluSx SINE Alu -13 299 1 609 233 70 95 chr6 48192229 48192376 -134222866 - L1ME2 LINE L1 -4477 1919 1770 2041 155 0 19 chr6 48192449 48192765 -134222477 - AluJb SINE Alu 0 312 3 247 257 54 0 chr6 48192767 48192841 -134222401 - MER58 DNA MER1_type -102 113 36 314 95 0 0 chr6 48192914 48192956 -134222286 + 5S rRNA rRNA 1 42 -79 1034 245 113 52 chr6 48193040 48193497 -134221745 - MER21A LTR ERV1 -75 856 251 1675 195 16 7 chr6 48193497 48193800 -134221442 + AluJo SINE Alu 1 306 -6 1034 245 113 52 chr6 48193800 48193964 -134221278 - MER21A LTR ERV1 -680 251 98 535 194 14 21 chr6 48193967 48194111 -134221131 - L1M4 LINE L1 -2092 4054 3912 1328 170 65 16 chr6 48194126 48194373 -134220869 - AluJo SINE Alu -48 264 6 1376 245 67 12 chr6 48194397 48194829 -134220413 - L1M4 LINE L1 -2256 3890 3435 452 282 81 35 chr6 48194812 48195160 -134220082 - L1ME2 LINE L1 -4755 1641 1278 * 438 243 135 44 chr6 48195565 48196018 -134219224 + L1M4 LINE L1 2224 2717 -3429 1810 139 0 0 chr6 48196079 48196338 -134218904 + AluJb SINE Alu 1 259 -53 246 232 18 0 chr6 48196442 48196498 -134218744 - MER21B LTR ERV1 -795 68 12 543 302 86 18 chr6 48196575 48196853 -134218389 - Charlie7 DNA MER1_type -2311 301 5 2296 104 0 3 chr6 48198002 48198309 -134216933 + AluSg SINE Alu 1 306 -4 1545 105 24 71 chr6 48200110 48200404 -134214838 - L1MA5 LINE L1 -2 6298 6019 1319 176 121 18 chr6 48200573 48200846 -134214396 + AluJb SINE Alu 1 301 -11 4372 162 51 20 chr6 48201181 48202118 -134213124 + L1MB5 LINE L1 5212 6174 0 1888 148 3 7 chr6 48202424 48202722 -134212520 + AluJb SINE Alu 1 297 -15 2294 92 13 10 chr6 48202741 48203047 -134212195 + AluSp SINE Alu 1 307 -6 1162 209 130 7 chr6 48203254 48203555 -134211687 + MER58B DNA MER1_type 1 338 -3 527 164 0 55 chr6 48204060 48204170 -134211072 - FLAM_A SINE Alu -11 131 28 229 313 0 0 chr6 48204361 48204428 -134210814 - MIR SINE MIR -67 195 129 355 126 263 11 chr6 48204437 48204532 -134210710 + FRAM SINE Alu 43 161 -5 356 303 15 38 chr6 48204534 48204666 -134210576 - MIR SINE MIR -132 130 2 778 196 0 25 chr6 48204722 48204912 -134210330 - FRAM SINE Alu 0 40 1 569 156 33 0 chr6 48204915 48205005 -134210237 - AluJ/FLAM SINE Alu -219 93 1 22 56 0 0 chr6 48205012 48205048 -134210194 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr6 48205735 48205757 -134209485 + (A)n Simple_repeat Simple_repeat 1 22 0 1398 179 62 23 chr6 48205809 48206066 -134209176 - AluJb SINE Alu -45 267 1 2307 101 3 0 chr6 48206517 48206815 -134208427 + AluSp SINE Alu 2 300 -13 2330 111 10 0 chr6 48206971 48207278 -134207964 - AluSx SINE Alu -2 310 1 2414 89 0 6 chr6 48207298 48207611 -134207631 - AluY SINE Alu 0 311 1 289 244 44 7 chr6 48207702 48207837 -134207405 + (TA)n Simple_repeat Simple_repeat 2 141 0 240 35 0 0 chr6 48207862 48207891 -134207351 + (TG)n Simple_repeat Simple_repeat 2 30 0 201 171 0 0 chr6 48208659 48208694 -134206548 + T-rich Low_complexity Low_complexity 1 35 0 207 100 0 0 chr6 48208998 48209028 -134206214 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 358 256 124 0 chr6 48209669 48209806 -134205436 + L2 LINE L2 2576 2729 -585 2133 143 0 0 chr6 48209854 48210162 -134205080 + AluJb SINE Alu 1 308 -4 428 330 121 38 chr6 48210282 48210301 -134204941 + L2 LINE L2 2968 2984 -288 1086 173 9 40 chr6 48210301 48210527 -134204715 - MER20 DNA MER1_type 0 219 1 428 330 121 38 chr6 48210527 48210771 -134204471 + L2 LINE L2 2984 3253 -19 2267 90 0 0 chr6 48211088 48211366 -134203876 + AluSg SINE Alu 17 294 -16 25 62 0 16 chr6 48212247 48212279 -134202963 + AT_rich Low_complexity Low_complexity 1 32 -31 1925 133 34 10 chr6 48212279 48212572 -134202670 - AluSx SINE Alu -7 305 6 25 62 0 16 chr6 48212572 48212603 -134202639 + AT_rich Low_complexity Low_complexity 32 63 0 945 189 0 0 chr6 48212625 48212789 -134202453 - AluSg/x SINE Alu -13 297 134 258 160 0 107 chr6 48212789 48212864 -134202378 - AluSp SINE Alu -136 167 101 1048 275 53 41 chr6 48212975 48213445 -134201797 - L1ME3A LINE L1 -231 5939 5457 1694 180 3 40 chr6 48213445 48213767 -134201475 + AluJo SINE Alu 1 310 -2 1048 275 53 41 chr6 48213767 48213935 -134201307 - L1ME3A LINE L1 -713 5457 5293 318 265 76 38 chr6 48214071 48214233 -134201009 + L1MC/D LINE L1 5259 5425 -855 302 259 116 79 chr6 48214307 48214496 -134200746 + L1MC/D LINE L1 5626 5821 -1987 1910 165 0 35 chr6 48214712 48215028 -134200214 + AluJb SINE Alu 1 305 -7 228 135 0 0 chr6 48215037 48215074 -134200168 + L1MB2 LINE L1 5331 5367 -817 304 127 0 18 chr6 48215079 48215134 -134200108 + L1MB2 LINE L1 5438 5491 -680 884 171 79 0 chr6 48215152 48215293 -134199949 + FAM SINE Alu 1 32 -153 3498 169 16 13 chr6 48215293 48215958 -134199284 + L1MB2 LINE L1 5491 6160 -11 2443 81 0 0 chr6 48215958 48216255 -134198987 - AluSp SINE Alu -16 297 1 3498 169 16 13 chr6 48216255 48216268 -134198974 + L1MB2 LINE L1 6160 6171 0 2427 82 0 0 chr6 48216290 48216584 -134198658 + AluSc SINE Alu 1 294 -15 427 145 0 0 chr6 48216733 48216795 -134198447 + AluS SINE Alu 1 62 -256 459 194 0 0 chr6 48216897 48216990 -134198252 + (TATG)n Simple_repeat Simple_repeat 1 93 0 194 245 41 0 chr6 48217091 48217140 -134198102 + L2 LINE L2 3221 3271 -1 898 164 0 38 chr6 48217990 48218149 -134197093 - FRAM SINE Alu -24 152 1 926 194 160 37 chr6 48218177 48218445 -134196797 + AluJo SINE Alu 2 302 0 258 329 29 44 chr6 48219291 48219428 -134195814 + MER5B DNA MER1_type 22 156 -22 358 275 70 42 chr6 48220669 48220811 -134194431 - L2 LINE L2 -1 3312 3167 682 314 80 61 chr6 48221190 48221665 -134193577 - L2 LINE L2 -517 2797 2314 313 302 54 18 chr6 48221802 48222024 -134193218 - L1M4 LINE L1 -1439 4707 4478 378 0 0 0 chr6 48222056 48222098 -134193144 + (TA)n Simple_repeat Simple_repeat 2 43 0 2130 128 0 7 chr6 48222257 48222555 -134192687 + AluSx SINE Alu 1 296 -16 989 261 108 54 chr6 48222605 48222642 -134192600 + L1M4 LINE L1 4408 4442 -1704 2320 99 0 10 chr6 48222642 48222944 -134192298 + AluSx SINE Alu 1 299 -13 989 261 108 54 chr6 48222944 48223200 -134192042 + L1M4 LINE L1 4442 4683 -1463 2345 94 7 0 chr6 48223200 48223507 -134191735 + AluSp SINE Alu 1 309 -4 989 261 108 54 chr6 48223507 48223882 -134191360 + L1M4 LINE L1 4683 5113 -1033 1642 118 31 8 chr6 48223882 48223964 -134191278 + AluSx SINE Alu 45 124 -188 225 0 0 0 chr6 48223964 48223989 -134191253 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1642 118 31 8 chr6 48223989 48224160 -134191082 + AluSx SINE Alu 124 304 -8 1966 105 65 4 chr6 48224206 48224483 -134190759 + AluSx SINE Alu 1 294 -18 974 183 0 0 chr6 48224485 48224638 -134190604 - AluJb SINE Alu -39 273 121 1132 241 25 13 chr6 48224824 48225190 -134190052 - L1ME LINE L1 -578 5586 5217 637 131 19 0 chr6 48225226 48225333 -134189909 - AluSg/x SINE Alu 0 312 204 237 125 208 0 chr6 48225333 48225381 -134189861 - AluY SINE Alu -131 170 113 1433 161 9 0 chr6 48225481 48225699 -134189543 - AluSx SINE Alu -92 220 1 421 217 66 59 chr6 48225713 48225769 -134189473 - L1ME LINE L1 -2921 3225 3171 2394 52 0 3 chr6 48225769 48226057 -134189185 - AluY SINE Alu -17 294 8 421 217 66 59 chr6 48226057 48226152 -134189090 - L1ME LINE L1 -2975 3171 3073 537 228 7 7 chr6 48226380 48226529 -134188713 - MER34C LTR ERV1 -417 168 20 2616 184 35 88 chr6 48226883 48227434 -134187808 - LTR8 LTR ERV1 0 691 185 1867 152 0 49 chr6 48227434 48227762 -134187480 - AluJb SINE Alu 0 312 1 2616 184 35 88 chr6 48227762 48227924 -134187318 - LTR8 LTR ERV1 -506 185 16 2240 115 0 3 chr6 48228390 48228694 -134186548 + AluSx SINE Alu 1 303 -9 2141 127 0 0 chr6 48228960 48229267 -134185975 - AluSq SINE Alu -6 307 1 2000 147 0 10 chr6 48229322 48229614 -134185628 + AluSx SINE Alu 1 289 -23 639 214 8 8 chr6 48229880 48230011 -134185231 - FLAM_A SINE Alu -2 131 1 504 48 0 0 chr6 48230049 48230112 -134185130 + (TAG)n Simple_repeat Simple_repeat 3 65 0 2134 104 17 10 chr6 48230136 48230433 -134184809 - AluSx SINE Alu -13 299 1 2005 139 27 0 chr6 48230760 48231054 -134184188 - AluJb SINE Alu -10 302 1 807 295 120 7 chr6 48231285 48231719 -134183523 + L1MC4a LINE L1 5450 5932 -1876 280 158 26 0 chr6 48231811 48231887 -134183355 + (TA)n Simple_repeat Simple_repeat 1 78 0 204 40 0 0 chr6 48232020 48232045 -134183197 + (TA)n Simple_repeat Simple_repeat 2 26 0 312 137 0 0 chr6 48232875 48232926 -134182316 + (T)n Simple_repeat Simple_repeat 1 51 0 816 193 11 44 chr6 48232929 48233110 -134182132 - FAM SINE Alu 0 175 1 288 0 0 0 chr6 48233114 48233146 -134182096 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2123 137 3 3 chr6 48233335 48233641 -134181601 - AluSx SINE Alu -6 306 1 1986 125 4 7 chr6 48233658 48233976 -134181266 - AluSq SINE Alu 0 322 6 2270 117 0 0 chr6 48234396 48234705 -134180537 - AluSx SINE Alu -3 309 1 2037 149 3 3 chr6 48236121 48236429 -134178813 - AluJb SINE Alu -4 308 1 530 310 163 22 chr6 48236528 48236883 -134178359 - L2 LINE L2 -588 2726 2322 740 291 65 13 chr6 48237213 48237443 -134177799 - MIR SINE MIR -19 243 2 998 264 13 0 chr6 48237996 48238306 -134176936 - L1M4 LINE L1 -2542 3604 3291 1822 87 0 21 chr6 48239261 48239503 -134175739 + AluSx SINE Alu 1 237 -75 1288 39 7 0 chr6 48239828 48239983 -134175259 + AluY SINE Alu 132 287 -24 2000 136 16 100 chr6 48240298 48240334 -134174908 - MLT2D LTR ERVL -4 410 373 468 0 0 0 chr6 48240334 48240386 -134174856 + (TG)n Simple_repeat Simple_repeat 2 53 0 2000 136 16 100 chr6 48240386 48240675 -134174567 - MLT2D LTR ERVL -41 373 131 2186 128 3 0 chr6 48240675 48240979 -134174263 - AluSx SINE Alu -7 305 1 2000 136 16 100 chr6 48240979 48241100 -134174142 - MLT2D LTR ERVL -283 131 1 35 0 0 22 chr6 48241110 48241132 -134174110 + AT_rich Low_complexity Low_complexity 1 22 -23 1879 125 59 0 chr6 48241132 48241404 -134173838 + AluSx SINE Alu 1 288 -24 35 0 0 22 chr6 48241404 48241427 -134173815 + AT_rich Low_complexity Low_complexity 22 45 0 304 200 0 0 chr6 48242027 48242077 -134173165 - 5S rRNA rRNA -71 50 1 537 285 47 28 chr6 48242511 48242764 -134172478 + L2 LINE L2 2225 2482 -832 320 338 47 83 chr6 48242831 48243239 -134172003 + L2 LINE L2 2876 3268 -4 2143 137 0 0 chr6 48243264 48243570 -134171672 + AluSx SINE Alu 1 306 -6 355 213 98 101 chr6 48246295 48246482 -134168760 - L1MC5 LINE L1 -44 7917 7731 1046 142 137 25 chr6 48246482 48246679 -134168563 + MER20 DNA MER1_type 1 219 0 355 213 98 101 chr6 48246679 48246744 -134168498 - L1MC5 LINE L1 -230 7731 7667 198 71 0 0 chr6 48246744 48246772 -134168470 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 219 36 0 0 chr6 48246771 48246799 -134168443 + (GA)n Simple_repeat Simple_repeat 2 29 0 355 213 98 101 chr6 48246772 48246799 -134168443 - L1MC5 LINE L1 -294 7667 7663 1996 132 0 0 chr6 48246799 48247072 -134168170 - AluSx SINE Alu -39 273 1 355 213 98 101 chr6 48247072 48247113 -134168129 - L1MC5 LINE L1 -298 7663 7623 2011 127 0 51 chr6 48247250 48247564 -134167678 + AluSg SINE Alu 1 298 -12 21 82 0 0 chr6 48247812 48247861 -134167381 + AT_rich Low_complexity Low_complexity 1 49 0 298 143 86 14 chr6 48247936 48248006 -134167236 + MIR SINE MIR 126 200 -62 400 249 195 11 chr6 48248692 48248877 -134166365 - L1ME4a LINE L1 -58 6063 5845 1929 112 0 4 chr6 48249001 48249259 -134165983 - AluSq SINE Alu -56 257 1 289 259 176 35 chr6 48249268 48249634 -134165608 - L1ME4a LINE L1 -488 5633 5361 259 298 76 15 chr6 48250023 48250154 -134165088 - L1MC/D LINE L1 -2158 5650 5512 990 205 6 0 chr6 48250380 48250546 -134164696 - FAM SINE Alu -8 167 1 327 211 204 20 chr6 48250581 48250733 -134164509 - L1ME4a LINE L1 -3 6118 5939 1904 151 0 4 chr6 48250910 48251189 -134164053 + AluJb SINE Alu 21 298 -14 2005 134 24 3 chr6 48251444 48251742 -134163500 - AluSx SINE Alu -8 304 1 1142 137 0 0 chr6 48251780 48251933 -134163309 + AluSg SINE Alu 1 153 -157 22 35 0 0 chr6 48252610 48252639 -134162603 + AT_rich Low_complexity Low_complexity 1 29 0 261 240 187 13 chr6 48252943 48253018 -134162224 - MIR SINE MIR -62 146 59 1678 192 7 10 chr6 48253031 48253333 -134161909 - AluJb SINE Alu -11 301 1 298 279 79 7 chr6 48253365 48253505 -134161737 - MIR SINE MIR -49 213 64 255 299 132 46 chr6 48253538 48253557 -134161685 - MIR SINE MIR -25 237 221 2281 109 6 6 chr6 48253557 48253868 -134161374 - AluSq SINE Alu -2 311 1 255 299 132 46 chr6 48253868 48254022 -134161220 - MIR SINE MIR -41 221 49 1952 143 14 3 chr6 48254393 48254686 -134160556 + AluSx SINE Alu 1 296 -16 2182 75 89 0 chr6 48255146 48255427 -134159815 + AluSx SINE Alu 1 306 -6 281 234 255 0 chr6 48256009 48256154 -134159088 - L1MC4 LINE L1 0 8042 7861 768 241 36 0 chr6 48256274 48256494 -134158748 - L1MC4 LINE L1 -985 7057 6830 2359 106 0 0 chr6 48256903 48257205 -134158037 + AluSx SINE Alu 1 302 -10 180 0 0 0 chr6 48258777 48258797 -134156445 + (A)n Simple_repeat Simple_repeat 1 20 0 2212 93 3 23 chr6 48259164 48259464 -134155778 + AluSg SINE Alu 1 294 -16 479 16 0 16 chr6 48259471 48259532 -134155710 + (CA)n Simple_repeat Simple_repeat 2 61 0 185 195 260 39 chr6 48259947 48260024 -134155218 - MIR SINE MIR -116 146 53 267 231 99 22 chr6 48260250 48260341 -134154901 - LTR16A LTR ERVL -5 445 348 2130 115 0 26 chr6 48260630 48260917 -134154325 + AluSx SINE Alu 1 281 -31 219 36 0 0 chr6 48260917 48260945 -134154297 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2130 115 0 26 chr6 48260945 48260962 -134154280 + AluSx SINE Alu 281 297 -15 2104 87 39 14 chr6 48260962 48261248 -134153994 + AluY SINE Alu 1 293 -18 234 0 0 0 chr6 48262101 48262127 -134153115 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1050 132 0 0 chr6 48262761 48262913 -134152329 + AluSg/x SINE Alu 159 310 -2 1770 177 35 0 chr6 48263827 48264109 -134151133 + AluJb SINE Alu 1 292 -20 793 103 0 0 chr6 48264112 48264219 -134151023 + U6 snRNA snRNA 1 107 0 229 36 0 0 chr6 48264219 48264247 -134150995 + U7 snRNA snRNA 10 37 -26 570 241 75 8 chr6 48264794 48264927 -134150315 + MIR SINE MIR 20 161 -101 741 161 0 0 chr6 48266335 48266459 -134148783 + AluJb SINE Alu 178 301 -11 923 229 75 14 chr6 48266775 48266989 -134148253 + MIR SINE MIR 23 249 -13 2240 116 0 0 chr6 48267020 48267313 -134147929 + AluSx SINE Alu 17 309 -3 291 215 83 16 chr6 48267421 48267542 -134147700 - HAL1 LINE L1 -322 2185 2057 311 80 0 0 chr6 48267542 48267592 -134147650 - Alu SINE Alu 0 302 253 2334 99 3 0 chr6 48267707 48268009 -134147233 - AluSx SINE Alu -9 303 1 802 257 108 78 chr6 48268140 48268395 -134146847 - HAL1 LINE L1 -738 1769 1523 2095 138 0 7 chr6 48268395 48268692 -134146550 - AluSx SINE Alu -17 295 1 815 125 31 23 chr6 48268695 48268823 -134146419 - FLAM_A SINE Alu -3 130 2 802 257 108 78 chr6 48268823 48268873 -134146369 - HAL1 LINE L1 -985 1522 1475 2080 127 3 7 chr6 48268873 48269172 -134146070 - AluSx SINE Alu -12 300 3 802 257 108 78 chr6 48269172 48269855 -134145387 - HAL1 LINE L1 -1032 1475 513 248 96 0 0 chr6 48270551 48270603 -134144639 - L1MB3 LINE L1 -7 6176 6125 2448 76 3 0 chr6 48270854 48271157 -134144085 + AluSp SINE Alu 1 304 -9 1053 225 9 22 chr6 48271160 48271387 -134143855 + AluJb SINE Alu 86 309 -3 370 315 189 41 chr6 48271388 48271991 -134143251 + L2 LINE L2 1781 2520 -794 2221 120 0 0 chr6 48271991 48272283 -134142959 - AluSx SINE Alu -20 292 1 370 315 189 41 chr6 48272283 48272434 -134142808 + L2 LINE L2 2520 2647 -667 204 295 250 28 chr6 48272509 48272797 -134142445 + L2 LINE L2 2825 3176 -96 1176 119 0 0 chr6 48273276 48273436 -134141806 - AluSg/x SINE Alu -16 294 135 182 245 123 47 chr6 48274317 48274423 -134140819 + MIR SINE MIR 41 154 -108 1956 138 17 3 chr6 48274432 48274723 -134140519 + AluSx SINE Alu 1 295 -17 257 346 117 25 chr6 48274733 48274895 -134140347 - MER91A DNA MER1_type -1 195 19 339 274 88 0 chr6 48274996 48275098 -134140144 + MIR SINE MIR 110 220 -42 331 328 55 23 chr6 48275261 48275389 -134139853 - MIR SINE MIR -111 151 20 2320 105 10 0 chr6 48275628 48275934 -134139308 + AluSx SINE Alu 1 309 -3 293 290 30 0 chr6 48276958 48277058 -134138184 + MER103 DNA DNA 63 165 -1 263 260 56 102 chr6 48277322 48277446 -134137796 + L1ME LINE L1 5582 5695 -426 1693 168 28 3 chr6 48277446 48277732 -134137510 + AluJb SINE Alu 1 293 -19 263 260 56 102 chr6 48277732 48277803 -134137439 + L1ME LINE L1 5695 5768 -353 625 155 0 0 chr6 48277864 48277961 -134137281 + FLAM_A SINE Alu 1 97 -45 2355 52 0 0 chr6 48278021 48278292 -134136950 + AluY SINE Alu 17 287 -24 266 282 39 19 chr6 48279342 48279445 -134135797 - MIR SINE MIR -43 219 115 1939 125 69 0 chr6 48279947 48280236 -134135006 - AluSx SINE Alu -3 309 1 668 234 0 0 chr6 48280400 48280528 -134134714 - FLAM_A SINE Alu -5 128 1 415 280 80 8 chr6 48280531 48280656 -134134586 - MIR3 SINE MIR -11 197 64 2230 176 52 41 chr6 48280675 48280737 -134134505 + L1MB3 LINE L1 5207 5267 -916 1588 135 73 59 chr6 48280737 48280835 -134134407 + AluJb SINE Alu 1 96 -216 2554 50 0 3 chr6 48280835 48281137 -134134105 + AluY SINE Alu 5 305 -6 1588 135 73 59 chr6 48281137 48281327 -134133915 + AluJb SINE Alu 96 293 -19 2230 176 52 41 chr6 48281327 48281870 -134133372 + L1MB3 LINE L1 5267 5813 -370 1226 107 0 0 chr6 48281870 48282029 -134133213 + AluSg/x SINE Alu 127 285 -25 2214 111 31 3 chr6 48282030 48282389 -134132853 + L1MB3 LINE L1 5815 6183 0 1733 136 64 0 chr6 48282392 48282656 -134132586 - AluJb SINE Alu -17 295 15 265 253 0 51 chr6 48283381 48283460 -134131782 - L1MC5 LINE L1 -65 7896 7822 798 187 7 7 chr6 48283563 48283713 -134131529 - MER46A DNA MER2_type -86 150 1 510 143 0 0 chr6 48283781 48283865 -134131377 + MER46A DNA MER2_type 151 234 -2 361 184 13 0 chr6 48283973 48284049 -134131193 - MER116 DNA Mariner 0 80 4 356 337 110 18 chr6 48284079 48284242 -134131000 + MER5B DNA MER1_type 1 178 0 2447 66 3 25 chr6 48284245 48284563 -134130679 + AluY SINE Alu 1 311 0 2075 98 21 11 chr6 48284982 48285268 -134129974 + AluSq SINE Alu 1 289 -24 1340 117 259 21 chr6 48285419 48285658 -134129584 - AluSx SINE Alu -15 297 2 809 139 16 0 chr6 48285720 48285842 -134129400 + AluJb SINE Alu 176 299 -13 484 298 102 96 chr6 48285899 48286028 -134129214 - L1ME3A LINE L1 -139 6023 5896 9708 68 12 58 chr6 48286028 48287461 -134127781 - SVA Other Other -1 1385 19 484 298 102 96 chr6 48287461 48287479 -134127763 - L1ME3A LINE L1 -266 5896 5880 2184 110 0 0 chr6 48287479 48287791 -134127451 - AluSx SINE Alu 0 312 1 484 298 102 96 chr6 48287791 48288101 -134127141 - L1ME3A LINE L1 -282 5880 5561 661 269 202 40 chr6 48288728 48289104 -134126138 - L2 LINE L2 -27 3286 2850 233 231 19 0 chr6 48289132 48289184 -134126058 - L2 LINE L2 -545 2769 2717 * 288 327 65 19 chr6 48289182 48289289 -134125953 + L2 LINE L2 3153 3264 -8 219 69 0 0 chr6 48290535 48290564 -134124678 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 195 42 0 0 chr6 48291733 48291757 -134123485 + (T)n Simple_repeat Simple_repeat 1 24 0 1765 147 14 24 chr6 48294152 48294444 -134120798 - AluJo SINE Alu -23 289 1 1230 238 162 13 chr6 48294472 48294934 -134120308 - L1ME1 LINE L1 -5 6161 5631 2351 99 0 0 chr6 48295588 48295890 -134119352 + AluSq SINE Alu 1 302 -11 228 293 75 29 chr6 48298640 48298814 -134116428 + L2 LINE L2 2827 3008 -264 1761 161 9 41 chr6 48298995 48299312 -134115930 - AluSg SINE Alu -3 307 1 308 311 132 21 chr6 48299395 48299552 -134115690 + MIR SINE MIR 27 210 -52 1522 143 0 62 chr6 48299552 48299824 -134115418 + AluJo SINE Alu 1 255 -57 308 311 132 21 chr6 48299824 48299856 -134115386 + MIR SINE MIR 210 237 -25 2393 87 0 22 chr6 48299900 48300212 -134115030 - AluSx SINE Alu -3 309 5 371 223 23 62 chr6 48300315 48300445 -134114797 + L2 LINE L2 3186 3310 -3 1468 158 37 84 chr6 48300929 48301101 -134114141 - AluJo SINE Alu -5 307 155 2069 99 11 4 chr6 48301101 48301373 -134113869 - AluSp SINE Alu -39 274 1 1468 158 37 84 chr6 48301373 48301522 -134113720 - AluJo SINE Alu -157 155 1 769 147 6 124 chr6 48301539 48301716 -134113526 - AluJo SINE Alu -92 220 65 2278 98 3 7 chr6 48301909 48302206 -134113036 + AluSq SINE Alu 1 296 -17 2254 110 0 20 chr6 48302538 48302837 -134112405 + AluSx SINE Alu 7 299 -13 1429 184 6 74 chr6 48302845 48303171 -134112071 + AluJo SINE Alu 1 304 -8 24 0 0 0 chr6 48303171 48303195 -134112047 + AT_rich Low_complexity Low_complexity 1 24 0 1006 175 219 7 chr6 48303495 48303764 -134111478 + L1MB5 LINE L1 5849 6174 0 2040 131 10 0 chr6 48303772 48304078 -134111164 + AluY SINE Alu 1 309 -2 279 54 0 0 chr6 48304103 48304140 -134111102 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 379 268 134 35 chr6 48304657 48304799 -134110443 - L2 LINE L2 0 3313 3158 224 239 55 55 chr6 48305007 48305116 -134110126 - L2 LINE L2 -20 3252 3144 331 186 81 12 chr6 48305303 48305389 -134109853 + L1ME3 LINE L1 6037 6128 -34 899 174 75 0 chr6 48305389 48305550 -134109692 + FRAM SINE Alu 1 170 -6 288 0 0 0 chr6 48305550 48305582 -134109660 + (TA)n Simple_repeat Simple_repeat 2 33 0 2301 89 0 16 chr6 48305625 48305929 -134109313 + AluSc SINE Alu 1 299 -10 1773 115 77 80 chr6 48305939 48306074 -134109168 + AluSx SINE Alu 1 135 -177 2586 68 0 0 chr6 48306074 48306384 -134108858 + AluY SINE Alu 1 310 -1 1773 115 77 80 chr6 48306384 48306561 -134108681 + AluSx SINE Alu 135 312 0 262 264 48 24 chr6 48306801 48306926 -134108316 - L1MC4a LINE L1 -1829 5979 5852 1118 163 0 0 chr6 48306984 48307150 -134108092 - AluSx SINE Alu -146 166 1 867 279 94 60 chr6 48307150 48307670 -134107572 - L1MC4a LINE L1 -1951 5857 5320 467 246 194 32 chr6 48307798 48307997 -134107245 + MIR SINE MIR 7 235 -27 218 307 61 18 chr6 48308761 48308875 -134106367 + MIR SINE MIR 135 253 -9 196 320 107 29 chr6 48308888 48308991 -134106251 - MIR3 SINE MIR -21 187 77 2498 78 0 3 chr6 48308999 48309306 -134105936 + AluSg SINE Alu 1 306 -4 507 276 49 49 chr6 48309390 48309553 -134105689 - L2 LINE L2 0 3313 3151 388 298 133 0 chr6 48310831 48310989 -134104253 + MIR SINE MIR 81 259 -3 829 191 7 0 chr6 48311003 48311155 -134104087 + MSTD LTR MaLR 1 153 -243 732 125 8 8 chr6 48311180 48311308 -134103934 + MSTD LTR MaLR 299 426 -2 858 255 94 76 chr6 48311971 48312548 -134102694 + L1MC5 LINE L1 7279 7865 -96 1001 76 0 0 chr6 48312549 48312667 -134102575 - AluSq/x SINE Alu -194 118 1 436 184 13 13 chr6 48312693 48312769 -134102473 - FRAM/FAM SINE Alu -102 74 1 2424 102 0 0 chr6 48312893 48313197 -134102045 + AluSx SINE Alu 1 304 -8 2431 91 3 0 chr6 48313589 48313898 -134101344 + AluSx SINE Alu 1 310 -2 2074 181 10 2 chr6 48314070 48314468 -134100774 + L1MB8 LINE L1 5769 6169 -9 2069 154 0 3 chr6 48314469 48314768 -134100474 - AluJb SINE Alu -14 298 1 459 228 32 8 chr6 48314790 48314880 -134100362 + MIR SINE MIR 65 160 -102 2189 122 10 0 chr6 48314880 48315206 -134100036 + AluSx SINE Alu 1 312 0 459 228 32 8 chr6 48315206 48315238 -134100004 + MIR SINE MIR 160 190 -72 2252 103 0 0 chr6 48315342 48315647 -134099595 + AluSx SINE Alu 4 308 0 699 205 0 0 chr6 48316229 48316346 -134098896 + FLAM_A SINE Alu 1 117 -16 1153 139 0 57 chr6 48316346 48316540 -134098702 - AluJ SINE Alu -1 311 129 2255 127 3 0 chr6 48316563 48316870 -134098372 - AluSq SINE Alu -5 308 1 300 154 0 0 chr6 48316870 48316922 -134098320 + T-rich Low_complexity Low_complexity 1 52 0 876 135 15 15 chr6 48316922 48317055 -134098187 - AluJ SINE Alu -169 133 1 1848 125 4 25 chr6 48317081 48317361 -134097881 + AluSq SINE Alu 1 274 -39 1832 153 0 40 chr6 48317834 48317976 -134097266 + AluSx SINE Alu 1 126 -186 1800 134 41 14 chr6 48317976 48318267 -134096975 + AluJb SINE Alu 1 299 -13 1832 153 0 40 chr6 48318267 48318425 -134096817 + AluSx SINE Alu 126 289 -23 31 0 0 0 chr6 48318425 48318456 -134096786 + AT_rich Low_complexity Low_complexity 1 31 0 1865 147 0 51 chr6 48318603 48318915 -134096327 - AluJb SINE Alu -16 296 1 347 273 132 72 chr6 48318961 48319118 -134096124 + L1ME4a LINE L1 5631 5777 -344 2163 105 7 29 chr6 48319118 48319424 -134095818 - AluSg SINE Alu -11 299 1 347 273 132 72 chr6 48319424 48319513 -134095729 + L1ME4a LINE L1 5777 5859 -262 2487 75 7 0 chr6 48319513 48319819 -134095423 - AluSp SINE Alu -5 308 1 347 273 132 72 chr6 48319819 48319988 -134095254 + L1ME4a LINE L1 5859 6072 -49 209 264 38 0 chr6 48320988 48321041 -134094201 - L2 LINE L2 -11 3261 3207 * 443 286 23 47 chr6 48321031 48321202 -134094040 - MIR3 SINE MIR -22 186 20 482 113 12 12 chr6 48321479 48321559 -134093683 - MER116 DNA Mariner 0 80 1 1891 152 0 31 chr6 48322885 48323001 -134092241 + AluJo SINE Alu 1 119 -193 198 0 0 0 chr6 48323001 48323023 -134092219 + (CA)n Simple_repeat Simple_repeat 1 22 0 1891 152 0 31 chr6 48323023 48323228 -134092014 + AluJo SINE Alu 119 312 0 936 167 19 6 chr6 48323302 48323464 -134091778 + AluSg/x SINE Alu 137 300 -12 291 226 50 25 chr6 48323511 48323670 -134091572 + L1ME LINE L1 5285 5447 -717 2150 138 0 0 chr6 48323675 48323971 -134091271 + AluSq SINE Alu 1 296 -17 4995 173 44 16 chr6 48324089 48325062 -134090180 - L1MC2 LINE L1 -9 6335 5329 693 209 0 0 chr6 48325062 48325191 -134090051 - FLAM_A SINE Alu -4 129 1 4995 173 44 16 chr6 48325191 48325252 -134089990 - L1MC2 LINE L1 -1015 5329 5271 793 153 0 8 chr6 48325295 48325413 -134089829 - FLAM_C SINE Alu -12 121 5 2012 132 0 47 chr6 48325513 48325832 -134089410 + AluSx SINE Alu 1 304 -8 405 295 88 9 chr6 48326085 48326312 -134088930 + MARNA DNA Mariner 78 322 -264 271 305 11 0 chr6 48327078 48327173 -134088069 + C-rich Low_complexity Low_complexity 3 98 0 1902 120 4 0 chr6 48328203 48328461 -134086781 + AluSq SINE Alu 1 259 -54 430 187 9 9 chr6 48328463 48328529 -134086713 + GA-rich Low_complexity Low_complexity 2 70 -38 2263 113 0 10 chr6 48328529 48328839 -134086403 + AluSx SINE Alu 1 307 -5 430 187 9 9 chr6 48328839 48328879 -134086363 + GA-rich Low_complexity Low_complexity 69 108 0 * 750 117 0 22 chr6 48328857 48328947 -134086295 + (GGAA)n Simple_repeat Simple_repeat 2 90 -45 2243 127 0 10 chr6 48328947 48329261 -134085981 + AluSx SINE Alu 1 311 -1 750 117 0 22 chr6 48329261 48329307 -134085935 + (GGAA)n Simple_repeat Simple_repeat 90 135 0 556 167 19 19 chr6 48329307 48329415 -134085827 + GA-rich Low_complexity Low_complexity 1 108 0 2048 149 3 3 chr6 48329418 48329726 -134085516 + AluJb SINE Alu 1 308 -4 1066 179 15 0 chr6 48329756 48329951 -134085291 + MLT1B LTR MaLR 193 390 0 2478 79 23 0 chr6 48330013 48330317 -134084925 - AluSq SINE Alu -2 311 1 410 271 170 54 chr6 48330368 48330591 -134084651 - L1ME3A LINE L1 -223 5947 5684 1946 152 17 0 chr6 48330591 48330888 -134084354 + AluJb SINE Alu 1 302 -10 410 271 170 54 chr6 48330888 48330941 -134084301 - L1ME3A LINE L1 -486 5684 5639 369 145 0 0 chr6 48330941 48331003 -134084239 + FLAM_A SINE Alu 72 133 0 365 294 6 85 chr6 48331025 48331202 -134084040 - L1M4 LINE L1 -3330 2816 2654 1797 143 59 3 chr6 48331202 48331489 -134083753 - AluSx SINE Alu -9 303 1 2121 121 6 19 chr6 48331528 48331705 -134083537 - AluSq SINE Alu -4 309 131 180 0 0 0 chr6 48331705 48331725 -134083517 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2298 89 0 0 chr6 48331725 48332005 -134083237 - AluY SINE Alu -31 280 1 2121 121 6 19 chr6 48332005 48332139 -134083103 - AluSq SINE Alu -180 133 1 1712 104 5 0 chr6 48332199 48332420 -134082822 + AluSx SINE Alu 9 230 -82 41 21 0 0 chr6 48332420 48332468 -134082774 + AT_rich Low_complexity Low_complexity 1 48 0 1050 140 167 9 chr6 48332670 48332898 -134082344 - MER21A LTR ERV1 -667 264 1 388 295 74 96 chr6 48332928 48333105 -134082137 - L1MEd LINE L1 -5746 373 194 2476 85 3 0 chr6 48333105 48333410 -134081832 + AluSp SINE Alu 1 306 -7 388 295 74 96 chr6 48333410 48333444 -134081798 - L1MEd LINE L1 -5925 194 161 2287 110 3 0 chr6 48333444 48333734 -134081508 + AluSx SINE Alu 3 293 -19 388 295 74 96 chr6 48333734 48333757 -134081485 - L1MEd LINE L1 -5958 161 139 4089 201 49 29 chr6 48333757 48334692 -134080550 - LTR13 LTR ERVK 0 954 1 388 295 74 96 chr6 48334692 48334808 -134080434 - L1MEd LINE L1 -5980 139 29 2275 109 0 26 chr6 48334827 48335129 -134080113 - AluSq SINE Alu -19 294 1 2101 145 0 3 chr6 48335138 48335441 -134079801 - AluSx SINE Alu -10 302 1 1885 157 0 11 chr6 48335573 48335884 -134079358 + AluJb SINE Alu 1 308 0 305 58 0 130 chr6 48335884 48335941 -134079301 + MER106A DNA MER1_type 186 235 -1 391 252 95 5 chr6 48335962 48336204 -134079038 - LTR16C LTR ERVL -47 444 163 2044 141 0 3 chr6 48336343 48336641 -134078601 + AluJb SINE Alu 3 299 -13 802 173 0 8 chr6 48336700 48336833 -134078409 - FRAM SINE Alu 0 40 1 235 217 0 0 chr6 48336833 48336893 -134078349 + L1MA3 LINE L1 5083 5142 -1004 2201 116 0 0 chr6 48336894 48337188 -134078054 + AluSx SINE Alu 1 294 -18 1150 162 0 0 chr6 48337188 48337367 -134077875 + AluSg/x SINE Alu 134 312 0 6895 98 7 20 chr6 48337368 48338293 -134076949 + L1MA3 LINE L1 5134 6070 -235 2277 108 3 0 chr6 48338293 48338588 -134076654 + AluSq SINE Alu 1 296 -17 6895 98 7 20 chr6 48338588 48338610 -134076632 + L1MA3 LINE L1 6070 6091 -214 1671 199 3 13 chr6 48338610 48338912 -134076330 + AluJb SINE Alu 1 299 -13 6895 98 7 20 chr6 48338912 48339151 -134076091 + L1MA3 LINE L1 6091 6305 0 1235 148 16 5 chr6 48339166 48339355 -134075887 - AluJo SINE Alu -116 196 6 2268 117 10 0 chr6 48339396 48339703 -134075539 - AluSx SINE Alu -2 310 1 1402 101 0 53 chr6 48339897 48340105 -134075137 + AluSx SINE Alu 1 197 -115 331 65 22 0 chr6 48340205 48340251 -134074991 - Alu SINE Alu -261 47 1 876 135 15 15 chr6 48340277 48340410 -134074832 + AluJ SINE Alu 1 133 -169 301 154 0 0 chr6 48340410 48340462 -134074780 + A-rich Low_complexity Low_complexity 1 180 0 2097 127 3 0 chr6 48340462 48340769 -134074473 + AluSq SINE Alu 1 308 -5 1060 139 0 57 chr6 48340792 48340986 -134074256 + AluJ SINE Alu 129 311 -1 677 205 0 0 chr6 48340986 48341103 -134074139 - FLAM_A SINE Alu -16 117 1 1758 122 32 11 chr6 48341685 48341987 -134073255 - AluSx SINE Alu 0 308 1 298 187 65 166 chr6 48341987 48342060 -134073182 + MIR SINE MIR 137 216 -46 1572 137 51 45 chr6 48342060 48342210 -134073032 - AluJo SINE Alu -18 294 147 2400 63 0 3 chr6 48342210 48342512 -134072730 - AluY SINE Alu -10 301 1 2321 83 0 3 chr6 48342514 48342816 -134072426 - AluSg SINE Alu -9 301 1 1572 137 51 45 chr6 48342816 48342954 -134072288 - AluJo SINE Alu -165 147 1 298 187 65 166 chr6 48342954 48343019 -134072223 + MIR SINE MIR 216 261 -1 1716 114 81 0 chr6 48343172 48343443 -134071799 + AluSx SINE Alu 1 293 -19 2097 104 17 0 chr6 48343539 48343837 -134071405 - AluSc SINE Alu -4 305 3 1906 116 3 14 chr6 48343845 48344153 -134071089 - AluSg1 SINE Alu 0 305 1 883 134 0 37 chr6 48344155 48344289 -134070953 - AluJo/FLAM SINE Alu -173 129 1 1842 153 14 0 chr6 48344373 48344668 -134070574 + AluJb SINE Alu 1 299 -13 22 0 0 0 chr6 48345222 48345244 -134069998 + AT_rich Low_complexity Low_complexity 1 22 0 1841 151 0 26 chr6 48345247 48345558 -134069684 + AluJb SINE Alu 2 304 -8 27 0 0 0 chr6 48345614 48345641 -134069601 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 48345907 48345935 -134069307 + AT_rich Low_complexity Low_complexity 1 28 0 2263 93 3 3 chr6 48348209 48348521 -134066721 + AluSx SINE Alu 1 312 0 417 198 23 12 chr6 48348970 48349056 -134066186 - AluSp SINE Alu -92 221 135 2272 102 0 0 chr6 48349180 48349484 -134065758 + AluSx SINE Alu 1 304 -8 2279 91 3 0 chr6 48349876 48350185 -134065057 + AluSx SINE Alu 1 310 -2 2075 180 10 2 chr6 48350360 48350755 -134064487 + L1MB8 LINE L1 5772 6169 -9 1918 154 0 3 chr6 48350756 48351055 -134064187 - AluJb SINE Alu -14 298 1 460 228 32 8 chr6 48351077 48351167 -134064075 + MIR SINE MIR 65 160 -102 2037 122 10 0 chr6 48351167 48351493 -134063749 + AluSx SINE Alu 1 312 0 460 228 32 8 chr6 48351493 48351525 -134063717 + MIR SINE MIR 160 190 -72 2168 106 0 0 chr6 48351629 48351922 -134063320 + AluSx SINE Alu 4 296 -16 2258 77 7 0 chr6 48351990 48352287 -134062955 + AluY SINE Alu 1 299 -12 1338 201 15 4 chr6 48352343 48352607 -134062635 + AluJb SINE Alu 1 267 -45 1482 148 96 0 chr6 48352895 48353166 -134062076 - AluJb SINE Alu -15 297 1 976 165 0 6 chr6 48353300 48353464 -134061778 - AluJb SINE Alu -16 296 134 1425 120 147 8 chr6 48353464 48353570 -134061672 - AluSx SINE Alu -17 295 205 2409 74 0 0 chr6 48353570 48353879 -134061363 - AluY SINE Alu 0 311 3 1481 98 15 0 chr6 48353883 48354086 -134061156 - AluSq SINE Alu -107 206 1 1425 120 147 8 chr6 48354086 48354233 -134061009 - AluSx SINE Alu -109 203 1 901 173 20 30 chr6 48354233 48354435 -134060807 + L1M4 LINE L1 3839 4038 -2108 1363 197 57 0 chr6 48354463 48354742 -134060500 - AluSg SINE Alu -10 300 6 491 278 21 0 chr6 48354742 48354886 -134060356 + L1M4 LINE L1 4026 4172 -1974 284 250 0 0 chr6 48355022 48355078 -134060164 + MER91 DNA MER1_type 141 196 0 352 221 95 179 chr6 48355201 48355309 -134059933 - MER5A DNA MER1_type 0 189 73 256 47 23 23 chr6 48355309 48355352 -134059890 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2054 82 25 0 chr6 48355354 48355634 -134059608 - AluSg SINE Alu -23 287 1 352 221 95 179 chr6 48355634 48355648 -134059594 - MER5A DNA MER1_type -117 72 58 2204 57 30 27 chr6 48355648 48355947 -134059295 - AluY SINE Alu -11 300 1 352 221 95 179 chr6 48355947 48356010 -134059232 - MER5A DNA MER1_type -131 58 5 1094 107 42 0 chr6 48356342 48356510 -134058732 + AluSg/x SINE Alu 135 309 -1 253 314 172 40 chr6 48356766 48357161 -134058081 + L2 LINE L2 1564 2010 -1304 2435 55 7 0 chr6 48357167 48357476 -134057766 - AluY SINE Alu 0 311 1 202 149 0 43 chr6 48357764 48357811 -134057431 + (AGGGGG)n Simple_repeat Simple_repeat 3 47 0 294 347 100 0 chr6 48359286 48359476 -134055766 - MIR SINE MIR 0 262 54 215 182 45 23 chr6 48359684 48359728 -134055514 + MER5B DNA MER1_type 110 154 -24 1983 116 3 10 chr6 48360070 48360372 -134054870 + AluSq SINE Alu 1 300 -13 1975 85 0 4 chr6 48360566 48360824 -134054418 + AluSg SINE Alu 1 257 -53 1366 266 180 70 chr6 48361332 48362277 -134052965 - L2 LINE L2 -81 3232 2020 326 82 143 0 chr6 48362277 48362326 -134052916 + LTR8 LTR ERV1 548 603 -88 1366 266 180 70 chr6 48362326 48362675 -134052567 - L2 LINE L2 -1293 2020 1711 944 182 18 59 chr6 48362679 48362899 -134052343 - AluJb SINE Alu -5 307 97 1117 287 126 56 chr6 48362899 48363012 -134052230 - L2 LINE L2 -1596 1718 1614 2145 106 17 0 chr6 48363012 48363314 -134051928 - AluSq SINE Alu -6 307 1 1117 287 126 56 chr6 48363314 48363901 -134051341 - L2 LINE L2 -1700 1614 969 670 184 0 0 chr6 48363922 48364047 -134051195 + L1MB3 LINE L1 6017 6141 -42 1808 143 13 7 chr6 48364148 48364448 -134050794 + AluSx SINE Alu 1 302 -10 224 330 11 45 chr6 48364632 48364720 -134050522 + L2 LINE L2 3219 3303 -10 1500 159 6 57 chr6 48364950 48365264 -134049978 - AluJo SINE Alu -14 298 1 22 0 0 0 chr6 48366074 48366096 -134049146 + AT_rich Low_complexity Low_complexity 1 22 0 819 181 0 0 chr6 48366419 48366552 -134048690 - FLAM_C SINE Alu 0 133 1 3038 124 70 2 chr6 48366574 48367074 -134048168 - Tigger3(Golem) DNA MER2_type 0 3029 2496 241 176 59 73 chr6 48367062 48367130 -134048112 - Alu SINE Alu -5 297 239 * 612 164 15 75 chr6 48367348 48367466 -134047776 - MIR SINE MIR -121 141 30 2206 101 0 3 chr6 48367466 48367772 -134047470 - AluSx SINE Alu -7 305 1 612 164 15 75 chr6 48367772 48367787 -134047455 - MIR SINE MIR -232 30 16 553 315 35 25 chr6 48367921 48368013 -134047229 + MIR SINE MIR 32 122 -140 2267 93 3 3 chr6 48368013 48368324 -134046918 - AluSp SINE Alu -2 311 1 553 315 35 25 chr6 48368324 48368434 -134046808 + MIR SINE MIR 122 236 -26 1528 184 0 16 chr6 48368835 48369144 -134046098 + AluJo SINE Alu 1 304 -8 2302 52 41 0 chr6 48369369 48369660 -134045582 + AluY SINE Alu 1 303 -8 358 156 0 15 chr6 48371511 48371574 -134043668 + Alu SINE Alu 1 48 -253 219 247 0 27 chr6 48371708 48371781 -134043461 + C-rich Low_complexity Low_complexity 2 72 0 2320 68 10 0 chr6 48372850 48373158 -134042084 - AluSp SINE Alu -2 311 1 189 0 0 0 chr6 48373159 48373180 -134042062 + (T)n Simple_repeat Simple_repeat 1 21 0 295 135 29 115 chr6 48374215 48374319 -134040923 - L1MC5 LINE L1 -37 7924 7830 2590 125 24 2 chr6 48374320 48374737 -134040505 + L1MA4 LINE L1 5869 6294 -6 962 86 0 0 chr6 48375248 48375376 -134039866 - AluSq/x SINE Alu -183 130 3 198 0 0 0 chr6 48375520 48375542 -134039700 + (TG)n Simple_repeat Simple_repeat 2 23 0 640 183 0 0 chr6 48375546 48375650 -134039592 - FLAM_C SINE Alu -19 124 21 1552 143 77 0 chr6 48375697 48375970 -134039272 + AluSx SINE Alu 1 294 -18 2112 103 13 3 chr6 48376033 48376335 -134038907 - AluSq SINE Alu -8 305 1 1103 142 16 0 chr6 48376385 48376568 -134038674 - AluJb SINE Alu -97 215 30 318 274 73 0 chr6 48378740 48378880 -134036362 + L1P LINE L1 4870 5019 -1127 1040 278 46 26 chr6 48379193 48379591 -134035651 + L1MC4a LINE L1 5265 5661 -706 729 183 56 0 chr6 48379603 48379729 -134035513 - FLAM_A SINE Alu 0 133 1 291 156 0 0 chr6 48379849 48379894 -134035348 + L1MB5 LINE L1 6020 6064 -110 1140 174 0 28 chr6 48379897 48380110 -134035132 + AluJo SINE Alu 90 296 -16 396 111 37 49 chr6 48380123 48380204 -134035038 + L1MB7 LINE L1 6105 6184 0 467 282 64 18 chr6 48380205 48380396 -134034846 + L1MC4a LINE L1 5738 5945 -176 324 70 0 0 chr6 48380396 48380439 -134034803 + (CA)n Simple_repeat Simple_repeat 2 44 0 467 282 64 18 chr6 48380439 48380516 -134034726 + L1MC4a LINE L1 5945 6017 -104 2546 40 0 0 chr6 48380556 48380855 -134034387 - AluY SINE Alu -12 299 1 940 171 0 17 chr6 48380994 48381169 -134034073 + AluJb SINE Alu 134 305 -7 1104 171 139 86 chr6 48381224 48381504 -134033738 - AluJo SINE Alu -7 295 1 2105 109 13 0 chr6 48381578 48381882 -134033360 - AluSp SINE Alu -5 308 1 25 65 0 0 chr6 48382139 48382185 -134033057 + AT_rich Low_complexity Low_complexity 1 46 0 1156 75 0 0 chr6 48382762 48382908 -134032334 + AluSq/x SINE Alu 1 146 -167 2533 46 0 0 chr6 48382908 48383213 -134032029 + AluY SINE Alu 1 305 -6 1496 164 69 11 chr6 48383288 48383562 -134031680 + AluJb SINE Alu 15 304 -8 2109 126 0 0 chr6 48383934 48384244 -134030998 - AluSx SINE Alu -2 310 1 1941 152 3 0 chr6 48384250 48384547 -134030695 - AluJo SINE Alu -14 298 1 1884 110 0 74 chr6 48384708 48385017 -134030225 - AluSx SINE Alu -20 292 7 1394 257 161 14 chr6 48385031 48385471 -134029771 + LTR33 LTR ERVL 10 514 -7 2030 125 0 0 chr6 48385790 48386087 -134029155 - AluSq SINE Alu -15 298 2 594 181 87 14 chr6 48386096 48386234 -134029008 - AluSg/x SINE Alu -6 304 157 2172 90 10 3 chr6 48386477 48386810 -134028432 - AluSq SINE Alu 0 313 1 827 157 0 15 chr6 48386810 48386944 -134028298 - AluJo/FLAM SINE Alu -180 132 1 21 0 0 0 chr6 48387195 48387216 -134028026 + AT_rich Low_complexity Low_complexity 1 21 0 373 379 49 51 chr6 48387658 48387793 -134027449 - L2 LINE L2 -7 3265 3131 1833 188 12 12 chr6 48387793 48388059 -134027183 - MER7A DNA MER2_type -2695 343 77 2167 84 3 7 chr6 48388059 48388386 -134026856 - AluSp SINE Alu 0 313 1 1833 188 12 12 chr6 48388386 48388464 -134026778 - MER7A DNA MER2_type -2960 78 1 373 379 49 51 chr6 48388464 48388719 -134026523 - L2 LINE L2 -141 3131 2876 745 168 0 16 chr6 48388940 48389065 -134026177 - FLAM_C SINE Alu -10 123 1 462 217 87 9 chr6 48389631 48389746 -134025496 - L2 LINE L2 -1 3312 3189 2218 92 0 3 chr6 48389783 48390077 -134025165 + AluY SINE Alu 1 293 -18 808 188 52 0 chr6 48390423 48390577 -134024665 - AluJb SINE Alu -17 295 134 1845 159 0 7 chr6 48390577 48390878 -134024364 - AluJb SINE Alu -13 299 1 190 0 0 0 chr6 48390887 48390908 -134024334 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2115 108 0 0 chr6 48390908 48391194 -134024048 - AluSq SINE Alu -1 306 1 205 67 0 0 chr6 48391236 48391266 -134023976 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 2096 93 7 0 chr6 48391266 48391546 -134023696 - AluY SINE Alu -1 311 1 346 202 0 11 chr6 48391551 48391645 -134023597 - L1MC5 LINE L1 -182 7779 7687 1757 62 13 4 chr6 48391655 48391882 -134023360 + AluSc SINE Alu 65 293 -16 2163 101 7 0 chr6 48392196 48392493 -134022749 - AluSp SINE Alu -14 299 1 1550 45 50 20 chr6 48393149 48393351 -134021891 - L1PA7 LINE L1 -141 6013 5806 1725 106 18 115 chr6 48393494 48393833 -134021409 - AluSq SINE Alu -7 306 1 2133 128 0 0 chr6 48393838 48394150 -134021092 - AluSx SINE Alu 0 312 1 244 148 296 0 chr6 48394801 48394855 -134020387 + L2 LINE L2 3201 3270 -2 3704 230 71 94 chr6 48395122 48395404 -134019838 + L1MEc LINE L1 49 336 -6060 2465 57 0 0 chr6 48395404 48395703 -134019539 + AluSc SINE Alu 1 299 -10 3704 230 71 94 chr6 48395703 48396241 -134019001 + L1MEc LINE L1 336 885 -5511 1306 158 131 15 chr6 48396241 48396501 -134018741 + AluJo SINE Alu 1 290 -12 3704 230 71 94 chr6 48396501 48396813 -134018429 + L1MEc LINE L1 885 1203 -5193 1821 154 0 10 chr6 48396813 48397105 -134018137 + AluJb SINE Alu 1 289 -23 3704 230 71 94 chr6 48397105 48397603 -134017639 + L1MEc LINE L1 1203 1639 -4757 1702 159 0 4 chr6 48397603 48397880 -134017362 - AluJb SINE Alu -32 280 5 3704 230 71 94 chr6 48397880 48398056 -134017186 + L1MEc LINE L1 1639 1817 -4579 705 156 0 0 chr6 48398299 48398408 -134016834 - AluJb SINE Alu -13 299 191 247 191 29 0 chr6 48398415 48398483 -134016759 + (TA)n Simple_repeat Simple_repeat 1 70 0 250 224 20 51 chr6 48398485 48398583 -134016659 + L1MC4 LINE L1 6608 6702 -1340 1814 100 4 15 chr6 48398583 48398844 -134016398 - AluSx SINE Alu -10 302 45 1467 133 4 13 chr6 48398972 48399206 -134016036 - AluSg/x SINE Alu -10 302 71 2154 114 0 7 chr6 48399249 48399555 -134015687 - AluSx SINE Alu -8 304 1 245 143 0 0 chr6 48399738 48399780 -134015462 - L1MC5 LINE L1 -217 7744 7703 1992 109 0 33 chr6 48399785 48400087 -134015155 - AluSg SINE Alu -16 294 3 1713 171 0 20 chr6 48400091 48400390 -134014852 - AluJb SINE Alu -19 293 1 2169 85 0 7 chr6 48400511 48400804 -134014438 - AluSx SINE Alu -21 291 1 1334 52 0 11 chr6 48400818 48400992 -134014250 - L1PA8 LINE L1 0 6172 6001 324 193 24 0 chr6 48401001 48401084 -134014158 - L1MC5 LINE L1 -370 7591 7507 398 209 104 0 chr6 48401209 48401324 -134013918 - L1MC5 LINE L1 -442 7519 7393 2370 84 3 0 chr6 48401572 48401883 -134013359 - AluSp SINE Alu -1 312 1 200 283 0 0 chr6 48402175 48402221 -134013021 + L2 LINE L2 3190 3235 -37 335 312 130 26 chr6 48402222 48402392 -134012850 - L2 LINE L2 -1 3312 3161 1675 145 7 54 chr6 48402392 48402540 -134012702 - AluJo SINE Alu -29 283 130 1799 145 10 0 chr6 48402540 48402829 -134012413 - AluSx SINE Alu -20 292 1 2103 105 3 19 chr6 48402839 48403153 -134012089 - AluSx SINE Alu -3 309 1 1675 145 7 54 chr6 48403153 48403290 -134011952 - AluJo SINE Alu -191 121 1 335 312 130 26 chr6 48403290 48403388 -134011854 - L2 LINE L2 -152 3161 3016 194 329 14 0 chr6 48403441 48403514 -134011728 - L2 LINE L2 -1722 1592 1519 2078 106 0 0 chr6 48403541 48403825 -134011417 - AluSx SINE Alu -15 297 14 309 125 0 0 chr6 48403852 48403892 -134011350 - Alu SINE Alu -256 46 7 309 125 0 0 chr6 48403912 48403952 -134011290 - Alu SINE Alu -255 46 7 309 125 0 0 chr6 48403972 48404012 -134011230 - Alu SINE Alu -255 46 7 232 39 0 0 chr6 48404032 48404058 -134011184 - AluY SINE Alu -257 46 21 2331 65 0 3 chr6 48404101 48404393 -134010849 - AluY SINE Alu -15 296 6 393 163 112 10 chr6 48404436 48404534 -134010708 + MER112 DNA MER1_type 83 190 -70 1748 159 7 20 chr6 48404536 48404838 -134010404 + AluJo SINE Alu 1 298 -14 288 293 141 20 chr6 48404906 48405104 -134010138 - L2 LINE L2 -1819 1495 1274 444 311 193 38 chr6 48405365 48405594 -134009648 + L2 LINE L2 1349 1541 -1773 2230 85 3 16 chr6 48405594 48405900 -134009342 - AluSx SINE Alu -10 302 1 444 311 193 38 chr6 48405900 48406556 -134008686 + L2 LINE L2 1541 2371 -943 322 151 66 33 chr6 48406589 48406775 -134008467 - MLT1H LTR MaLR -6 543 253 651 281 80 18 chr6 48407025 48407299 -134007943 - MLT1H LTR MaLR -256 293 3 2142 91 0 13 chr6 48407315 48407622 -134007620 - AluY SINE Alu -8 303 1 988 111 0 0 chr6 48407622 48407757 -134007485 - AluSq/x SINE Alu -177 135 1 677 232 92 5 chr6 48407761 48407946 -134007296 - MIR SINE MIR -10 252 52 259 303 0 15 chr6 48407963 48408029 -134007213 - MIR SINE MIR -181 81 17 354 309 147 28 chr6 48408230 48408515 -134006727 + L2 LINE L2 2594 2912 -402 232 314 81 12 chr6 48408555 48408641 -134006601 - L2 LINE L2 -44 3228 3137 192 77 0 0 chr6 48408783 48408809 -134006433 + (A)n Simple_repeat Simple_repeat 1 26 0 528 213 0 28 chr6 48408857 48408965 -134006277 - L2 LINE L2 0 3313 3209 697 228 95 0 chr6 48409063 48409221 -134006021 + MER5B DNA MER1_type 6 178 0 539 292 66 57 chr6 48409249 48409615 -134005627 - L2 LINE L2 -452 2862 2494 361 306 134 0 chr6 48409894 48410028 -134005214 + L2 LINE L2 3119 3270 -2 2033 96 3 51 chr6 48410033 48410345 -134004897 + AluSp SINE Alu 1 297 -16 688 72 0 21 chr6 48410345 48410442 -134004800 + AluSp SINE Alu 39 133 -180 285 29 0 0 chr6 48410626 48410660 -134004582 + (TTA)n Simple_repeat Simple_repeat 1 34 0 792 155 0 0 chr6 48410660 48410776 -134004466 - FLAM_C SINE Alu -27 116 1 1682 135 3 75 chr6 48410811 48411129 -134004113 + AluSx SINE Alu 1 295 -17 1740 106 28 4 chr6 48411252 48411506 -134003736 + AluSx SINE Alu 10 269 -43 22 0 0 0 chr6 48411514 48411536 -134003706 + AT_rich Low_complexity Low_complexity 1 22 0 311 261 28 11 chr6 48411536 48411644 -134003598 + MIR SINE MIR 54 165 -65 1735 151 33 20 chr6 48411696 48412000 -134003242 + AluJb SINE Alu 1 308 -4 309 313 23 55 chr6 48412628 48412737 -134002505 + L2 LINE L2 3149 3255 -17 1466 149 87 11 chr6 48412737 48413013 -134002229 + AluJb SINE Alu 1 297 -15 309 313 23 55 chr6 48413013 48413031 -134002211 + L2 LINE L2 3255 3272 0 212 318 32 0 chr6 48413230 48413293 -134001949 - MIR SINE MIR -50 212 148 2187 129 0 0 chr6 48413609 48413920 -134001322 + AluSx SINE Alu 1 311 -1 2397 80 0 0 chr6 48414030 48414332 -134000910 + AluSx SINE Alu 1 302 -10 1707 137 49 14 chr6 48414337 48414622 -134000620 + AluJb SINE Alu 2 296 -16 2224 96 0 3 chr6 48414727 48415029 -134000213 - AluY SINE Alu -10 301 1 811 143 60 0 chr6 48416083 48416216 -133999026 - AluJo SINE Alu -171 141 1 1847 126 13 32 chr6 48416631 48416830 -133998412 + AluSx SINE Alu 1 193 -119 2448 66 0 0 chr6 48416830 48417135 -133998107 + AluY SINE Alu 2 306 -5 1847 126 13 32 chr6 48417135 48417245 -133997997 + AluSx SINE Alu 193 304 -8 21 57 0 0 chr6 48417366 48417401 -133997841 + AT_rich Low_complexity Low_complexity 1 35 0 185 339 105 73 chr6 48417688 48417812 -133997430 - L2 LINE L2 -40 3232 3105 258 308 170 6 chr6 48418056 48418238 -133997004 - L2 LINE L2 -542 2772 2561 1764 226 102 37 chr6 48419083 48419592 -133995650 - MLT1F LTR MaLR 0 542 1 232 198 198 63 chr6 48419597 48419723 -133995519 - L2 LINE L2 -10 3303 3161 620 208 102 37 chr6 48419865 48420081 -133995161 + MER112 DNA MER1_type 22 251 -9 190 319 22 44 chr6 48420186 48420277 -133994965 + L2 LINE L2 2947 3035 -237 1291 113 0 0 chr6 48420294 48420480 -133994762 - AluSg/x SINE Alu -7 303 118 2293 82 0 3 chr6 48420483 48420786 -133994456 - AluSq SINE Alu -11 302 1 1793 82 37 0 chr6 48420807 48421052 -133994190 - AluSq SINE Alu -59 254 1 354 236 79 102 chr6 48422065 48422160 -133993082 - L2 LINE L2 -127 3145 3049 571 251 92 21 chr6 48422160 48422399 -133992843 - MER112 DNA MER1_type 0 256 1 354 236 79 102 chr6 48422399 48422519 -133992723 - L2 LINE L2 -223 3049 2935 1317 128 9 28 chr6 48422931 48423142 -133992100 - LTR48B LTR ERV1 0 644 438 2177 98 3 0 chr6 48423152 48423448 -133991794 - AluSx SINE Alu -15 297 1 26 0 0 0 chr6 48423450 48423476 -133991766 + AT_rich Low_complexity Low_complexity 1 26 0 669 164 0 0 chr6 48423483 48423587 -133991655 - FLAM_C SINE Alu -38 105 2 2164 97 0 3 chr6 48423588 48423886 -133991356 - AluSx SINE Alu -15 297 1 290 182 0 0 chr6 48423904 48423948 -133991294 - AluJb SINE Alu -65 237 194 1331 198 138 21 chr6 48423951 48424335 -133990907 - LTR48B LTR ERV1 -215 429 1 2267 81 0 7 chr6 48425009 48425305 -133989937 - AluSq SINE Alu -19 294 1 1998 117 0 52 chr6 48426082 48426407 -133988835 - AluSg SINE Alu -2 308 1 2128 130 0 0 chr6 48426411 48426718 -133988524 - AluJb SINE Alu -5 307 1 454 259 37 29 chr6 48426723 48426881 -133988361 - MIR SINE MIR -36 172 55 1002 263 22 4 chr6 48427278 48427506 -133987736 - MIR SINE MIR -13 249 18 24 32 0 0 chr6 48428044 48428075 -133987167 + AT_rich Low_complexity Low_complexity 1 31 0 460 304 73 23 chr6 48428375 48428595 -133986647 + MIR SINE MIR 21 251 -11 661 164 17 9 chr6 48428769 48428885 -133986357 + FLAM_C SINE Alu 1 117 -16 1421 88 0 44 chr6 48428908 48429113 -133986129 - AluSg/x SINE Alu -32 278 83 841 216 0 0 chr6 48429141 48429294 -133985948 + FRAM SINE Alu 1 153 -13 459 0 0 0 chr6 48429294 48429345 -133985897 + (CA)n Simple_repeat Simple_repeat 2 52 0 244 152 0 0 chr6 48429737 48429783 -133985459 - AluJb SINE Alu 0 301 256 1278 119 25 10 chr6 48429785 48429986 -133985256 - AluJb SINE Alu -108 204 1 1405 161 68 14 chr6 48429991 48430271 -133984971 - AluJo SINE Alu -13 299 5 202 29 57 0 chr6 48430796 48430831 -133984411 + (TTG)n Simple_repeat Simple_repeat 2 38 0 2129 73 4 0 chr6 48430832 48431107 -133984135 - AluSx SINE Alu -36 276 1 318 26 0 0 chr6 48431655 48431694 -133983548 + (TG)n Simple_repeat Simple_repeat 1 39 0 36 0 0 0 chr6 48431849 48431885 -133983357 + AT_rich Low_complexity Low_complexity 1 36 0 599 118 11 0 chr6 48432166 48432259 -133982983 - AluY SINE Alu -6 305 212 * 775 132 9 0 chr6 48432251 48432365 -133982877 - AluJb SINE Alu -129 183 69 387 0 0 0 chr6 48432373 48432416 -133982826 + (TTTTTA)n Simple_repeat Simple_repeat 1 43 0 648 190 0 0 chr6 48432467 48432583 -133982659 - FLAM_C SINE Alu -27 116 1 387 0 0 0 chr6 48432815 48432858 -133982384 + (TG)n Simple_repeat Simple_repeat 2 44 0 496 226 10 0 chr6 48432876 48432978 -133982264 - AluJo SINE Alu -93 219 117 2124 87 0 39 chr6 48433070 48433381 -133981861 + AluSq SINE Alu 1 299 -14 2082 111 3 7 chr6 48433553 48433851 -133981391 + AluSx SINE Alu 1 297 -15 913 249 203 34 chr6 48434457 48435164 -133980078 - L2 LINE L2 0 3313 2473 2245 80 13 0 chr6 48435169 48435469 -133979773 + AluSp SINE Alu 1 304 -9 371 241 176 59 chr6 48435855 48436042 -133979200 + MIR SINE MIR 15 223 -39 1879 149 0 7 chr6 48436095 48436397 -133978845 + AluSx SINE Alu 1 300 -12 1990 160 6 9 chr6 48436403 48436753 -133978489 + L1PB4 LINE L1 5804 6152 -4 23 33 0 0 chr6 48436784 48436814 -133978428 + AT_rich Low_complexity Low_complexity 1 30 0 1745 138 4 0 chr6 48436818 48437079 -133978163 + AluSq SINE Alu 1 262 -51 480 118 0 0 chr6 48437111 48437187 -133978055 + MER2 DNA MER2_type 85 160 -185 353 135 0 0 chr6 48437200 48437252 -133977990 - MER66B LTR ERV1 -140 346 295 556 232 108 36 chr6 48437253 48437447 -133977795 + MER2 DNA MER2_type 137 344 -1 383 200 118 52 chr6 48437448 48437491 -133977751 + Charlie4 DNA MER1_type 149 188 -320 780 169 0 0 chr6 48437491 48437609 -133977633 - FLAM_C SINE Alu -14 119 2 383 200 118 52 chr6 48437609 48437700 -133977542 + Charlie4 DNA MER1_type 188 292 -216 2059 101 14 7 chr6 48437700 48437997 -133977245 - AluSc SINE Alu -10 299 1 289 161 18 0 chr6 48437997 48438053 -133977189 - L1MB3 LINE L1 -104 6079 6023 1764 126 3 44 chr6 48438273 48438459 -133976783 - AluSx SINE Alu 0 311 119 216 0 0 0 chr6 48438459 48438483 -133976759 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1670 141 0 0 chr6 48438483 48438732 -133976510 - AluSg SINE Alu -27 283 35 1764 126 3 44 chr6 48438732 48438867 -133976375 - AluSx SINE Alu -190 121 1 1133 146 0 0 chr6 48438941 48439119 -133976123 - AluSg/x SINE Alu 0 312 135 2018 121 7 0 chr6 48439374 48439671 -133975571 + AluSx SINE Alu 1 299 -13 2093 118 3 3 chr6 48440004 48440309 -133974933 + AluSx SINE Alu 1 305 -7 1337 197 102 7 chr6 48440397 48440681 -133974561 + AluJb SINE Alu 2 312 0 222 128 0 0 chr6 48440807 48440846 -133974396 + (CA)n Simple_repeat Simple_repeat 1 39 0 874 208 10 29 chr6 48440847 48441054 -133974188 - L1MC4 LINE L1 -157 7885 7683 669 165 0 67 chr6 48441093 48441142 -133974100 - FLAM_A SINE Alu -185 126 75 2321 55 24 0 chr6 48441142 48441431 -133973811 - AluY SINE Alu -15 296 1 669 165 0 67 chr6 48441431 48441516 -133973726 - FLAM_A SINE Alu -236 75 13 183 62 31 0 chr6 48441516 48441548 -133973694 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 1763 114 0 0 chr6 48441548 48441793 -133973449 - AluSx SINE Alu -1 314 39 3756 193 117 85 chr6 48441809 48441928 -133973314 - L1MC4 LINE L1 -366 7676 7562 214 39 0 0 chr6 48441928 48441954 -133973288 + (TTA)n Simple_repeat Simple_repeat 3 180 0 1951 100 14 4 chr6 48441954 48442233 -133973009 - AluSp SINE Alu -1 308 2 3756 193 117 85 chr6 48442233 48443213 -133972029 - L1MC4 LINE L1 -480 7562 6523 2154 110 0 0 chr6 48443213 48443512 -133971730 - AluSx SINE Alu -13 299 1 3756 193 117 85 chr6 48443512 48443734 -133971508 - L1MC4 LINE L1 -1519 6523 6310 1550 181 19 10 chr6 48443734 48444043 -133971199 + AluJb SINE Alu 1 312 0 2222 109 0 0 chr6 48444699 48445003 -133970239 - AluSg SINE Alu -6 304 1 2210 99 0 7 chr6 48445026 48445328 -133969914 - AluSx SINE Alu -10 302 3 21 0 0 0 chr6 48445483 48445504 -133969738 + AT_rich Low_complexity Low_complexity 1 21 0 235 220 8 127 chr6 48445504 48445553 -133969689 - L1MC4a LINE L1 -1640 6168 6139 2240 99 0 0 chr6 48445553 48445855 -133969387 + AluSx SINE Alu 1 302 -10 235 220 8 127 chr6 48445855 48445923 -133969319 - L1MC4a LINE L1 -1669 6139 6065 429 233 44 18 chr6 48446145 48446367 -133968875 - L1MC4 LINE L1 -131 7911 7618 574 240 114 70 chr6 48446483 48446762 -133968480 - L1MC4 LINE L1 -635 7407 7142 2267 89 0 0 chr6 48446762 48447055 -133968187 + AluSx SINE Alu 1 293 -19 1658 103 4 33 chr6 48447058 48447300 -133967942 + AluSx SINE Alu 57 291 -21 574 240 114 70 chr6 48447300 48447403 -133967839 - L1MC4 LINE L1 -901 7141 7004 776 137 8 0 chr6 48447410 48447527 -133967715 - FLAM_C SINE Alu -15 118 1 522 249 78 28 chr6 48447542 48447759 -133967483 - L1MC5 LINE L1 -26 7935 7708 842 247 42 30 chr6 48447780 48448043 -133967199 - L1MC4 LINE L1 -989 7053 6788 641 164 86 0 chr6 48448152 48448268 -133966974 - FLAM_C SINE Alu -5 138 13 2175 97 3 0 chr6 48448287 48448624 -133966618 - AluY SINE Alu 0 311 1 1244 109 6 6 chr6 48448626 48448809 -133966433 - AluSg/x SINE Alu -18 294 112 2058 120 3 7 chr6 48448875 48449184 -133966058 + AluSx SINE Alu 1 308 -4 2235 79 7 3 chr6 48449267 48449570 -133965672 - AluSg SINE Alu -6 304 1 233 269 62 54 chr6 48450047 48450177 -133965065 + MIR SINE MIR 16 146 -62 794 228 0 23 chr6 48450177 48450348 -133964894 - MER5B DNA MER1_type -11 167 1 212 340 111 7 chr6 48450572 48450716 -133964526 + L2 LINE L2 2866 3024 -248 360 290 190 38 chr6 48450834 48450940 -133964302 - L2 LINE L2 0 3272 3183 2238 84 0 7 chr6 48450940 48451236 -133964006 - AluY SINE Alu -15 296 3 360 290 190 38 chr6 48451236 48451498 -133963744 - L2 LINE L2 -89 3183 2848 377 294 256 41 chr6 48451521 48451877 -133963365 - L2 LINE L2 -674 2640 2362 2171 81 10 19 chr6 48451877 48452185 -133963057 - AluSg SINE Alu -5 305 1 377 294 256 41 chr6 48452185 48452313 -133962929 - L2 LINE L2 -952 2362 2263 2435 55 7 0 chr6 48452313 48452622 -133962620 + AluY SINE Alu 1 311 0 377 294 256 41 chr6 48452622 48453022 -133962220 - L2 LINE L2 -1051 2263 1564 1101 107 41 0 chr6 48453279 48453470 -133961772 - AluSg/x SINE Alu 0 334 137 352 221 95 179 chr6 48453802 48453865 -133961377 + MER5A DNA MER1_type 5 72 -117 2204 57 30 27 chr6 48453865 48454164 -133961078 + AluY SINE Alu 1 300 -11 352 221 95 179 chr6 48454164 48454178 -133961064 + MER5A DNA MER1_type 72 86 -103 2055 82 25 0 chr6 48454178 48454503 -133960739 + AluSg SINE Alu 1 332 0 352 221 95 179 chr6 48454503 48454611 -133960631 + MER5A DNA MER1_type 86 189 0 284 250 0 0 chr6 48454734 48454790 -133960452 - MER91 DNA MER1_type 0 196 141 491 278 21 0 chr6 48454926 48455070 -133960172 - L1M4 LINE L1 -1974 4172 4026 1363 197 57 0 chr6 48455070 48455349 -133959893 + AluSg SINE Alu 6 300 -10 901 173 20 30 chr6 48455377 48455579 -133959663 - L1M4 LINE L1 -2108 4038 3839 1425 120 147 8 chr6 48455579 48455726 -133959516 + AluSx SINE Alu 1 126 -186 1481 98 15 0 chr6 48455726 48455929 -133959313 + AluSq SINE Alu 1 206 -107 2409 74 0 0 chr6 48455933 48456242 -133959000 + AluY SINE Alu 3 311 0 1425 120 147 8 chr6 48456242 48456348 -133958894 + AluSx SINE Alu 128 295 -17 976 165 0 6 chr6 48456348 48456512 -133958730 + AluJb SINE Alu 134 296 -16 1482 148 96 0 chr6 48456646 48456917 -133958325 + AluJb SINE Alu 1 297 -15 1338 201 15 4 chr6 48457205 48457469 -133957773 - AluJb SINE Alu -45 267 1 2273 77 7 0 chr6 48457525 48457822 -133957420 - AluY SINE Alu -12 299 1 1724 120 67 11 chr6 48457853 48458154 -133957088 + AluSx SINE Alu 1 316 0 2135 114 0 7 chr6 48458321 48458627 -133956615 + AluSx SINE Alu 1 304 -8 1855 120 55 0 chr6 48458691 48458965 -133956277 + AluSc SINE Alu 5 293 -16 2111 108 20 0 chr6 48458992 48459289 -133955953 + AluSx SINE Alu 1 303 -9 686 221 0 0 chr6 48459324 48459446 -133955796 + FLAM_A SINE Alu 1 122 -11 2279 93 0 0 chr6 48460463 48460763 -133954479 + AluSx SINE Alu 1 300 -12 331 244 0 23 chr6 48460768 48460854 -133954388 - HsTC2 DNA Tc2 -14 1884 1801 1783 100 123 0 chr6 48460899 48461168 -133954074 + AluJb SINE Alu 1 302 0 1501 176 57 4 chr6 48462284 48462563 -133952679 - AluJb SINE Alu -14 298 5 1694 175 0 9 chr6 48462589 48462904 -133952338 - AluJo SINE Alu 0 312 1 243 182 0 0 chr6 48462917 48462972 -133952270 - L1MA4 LINE L1 0 6300 6246 1701 149 11 7 chr6 48463348 48463629 -133951613 + AluJb SINE Alu 7 288 -24 249 33 0 0 chr6 48463630 48463660 -133951582 + (ATG)n Simple_repeat Simple_repeat 1 30 0 1716 123 43 7 chr6 48464128 48464404 -133950838 + AluJb SINE Alu 1 286 -26 2129 98 3 0 chr6 48464450 48464736 -133950506 - AluSx SINE Alu -4 308 22 1050 155 0 0 chr6 48465537 48465698 -133949544 + FAM SINE Alu 13 173 -12 198 0 0 0 chr6 48465698 48465720 -133949522 + (TA)n Simple_repeat Simple_repeat 2 23 0 2152 97 7 10 chr6 48465886 48466194 -133949048 - AluSx SINE Alu -5 307 1 2282 99 0 0 chr6 48466317 48466619 -133948623 + AluSx SINE Alu 1 302 -10 2155 85 4 0 chr6 48466619 48466900 -133948342 + AluSp SINE Alu 1 282 -31 198 0 0 0 chr6 48466903 48466925 -133948317 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2089 102 0 10 chr6 48467192 48467487 -133947755 + AluSg SINE Alu 1 292 -18 2322 61 0 14 chr6 48467734 48468028 -133947214 - AluY SINE Alu -21 290 1 363 272 61 88 chr6 48468628 48468775 -133946467 - MIR SINE MIR -99 163 21 230 154 39 0 chr6 48468874 48468926 -133946316 - L1MB7 LINE L1 -17 6167 6114 2154 116 3 0 chr6 48468928 48469239 -133946003 + AluSp SINE Alu 1 312 -1 619 64 13 4 chr6 48469243 48469412 -133945830 + AluSx SINE Alu 58 296 -13 495 261 9 0 chr6 48469412 48469527 -133945715 - L1MB7 LINE L1 -57 6127 6012 2038 131 0 0 chr6 48469800 48470106 -133945136 + AluSx SINE Alu 1 306 -6 557 148 0 0 chr6 48470141 48470222 -133945020 + AluS SINE Alu 4 84 -229 268 275 11 11 chr6 48470223 48470314 -133944928 + L1MC4a LINE L1 5852 5942 -1866 22 0 0 0 chr6 48470318 48470340 -133944902 + AT_rich Low_complexity Low_complexity 1 22 0 257 103 0 26 chr6 48470820 48470859 -133944383 + Alu SINE Alu 2 39 -264 2407 63 3 0 chr6 48471129 48471431 -133943811 - AluY SINE Alu -8 303 1 2041 95 3 39 chr6 48471830 48471965 -133943277 + AluSx SINE Alu 1 139 -173 2217 90 0 10 chr6 48471965 48472266 -133942976 + AluSq SINE Alu 1 298 -15 2041 95 3 39 chr6 48472266 48472436 -133942806 + AluSx SINE Alu 139 295 -17 21 0 0 0 chr6 48473996 48474017 -133941225 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 48476449 48476487 -133938755 + AT_rich Low_complexity Low_complexity 1 38 0 1769 88 84 8 chr6 48476958 48477244 -133937998 - AluY SINE Alu 0 306 1 2205 81 3 10 chr6 48477857 48478152 -133937090 + AluSp SINE Alu 1 293 -20 337 246 58 80 chr6 48478523 48478661 -133936581 - L2 LINE L2 -6 3266 3132 1612 158 17 10 chr6 48478723 48479014 -133936228 + AluJo SINE Alu 1 293 -19 207 0 0 0 chr6 48479143 48479166 -133936076 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1846 107 11 18 chr6 48479168 48479449 -133935793 - AluSp SINE Alu -29 284 6 1959 104 19 36 chr6 48479601 48479908 -133935334 + AluSx SINE Alu 1 302 -10 1880 127 0 35 chr6 48480202 48480516 -133934726 + AluSx SINE Alu 1 303 -9 2019 118 3 22 chr6 48480554 48480868 -133934374 + AluSx SINE Alu 1 308 -4 2230 104 3 0 chr6 48480870 48481177 -133934065 + AluSp SINE Alu 1 308 -5 943 184 5 0 chr6 48481754 48481939 -133933303 - AluJb SINE Alu -2 310 125 2284 94 7 3 chr6 48481951 48482260 -133932982 - AluSg SINE Alu 0 310 1 2129 104 0 3 chr6 48482260 48482557 -133932685 - AluY SINE Alu -15 296 1 1984 128 0 16 chr6 48482561 48482866 -133932376 - AluSx SINE Alu -12 300 1 270 136 0 0 chr6 48482869 48482913 -133932329 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 1781 154 0 7 chr6 48482913 48483199 -133932043 - AluJb SINE Alu -28 284 1 884 111 0 0 chr6 48483199 48483325 -133931917 - AluJb SINE Alu -176 136 11 2413 71 3 0 chr6 48483499 48483810 -133931432 + AluSx SINE Alu 1 312 0 2189 114 0 0 chr6 48483816 48484123 -133931119 + AluSc SINE Alu 1 307 -2 2286 96 3 6 chr6 48484354 48484667 -133930575 + AluSx SINE Alu 1 312 0 380 32 0 129 chr6 48484906 48484968 -133930274 - AluSx SINE Alu -4 298 245 1423 126 0 0 chr6 48484969 48485167 -133930075 - AluSx SINE Alu -114 198 1 1952 118 7 3 chr6 48485411 48485699 -133929543 - AluSx SINE Alu -23 289 1 219 250 39 0 chr6 48486071 48486123 -133929119 - L2 LINE L2 -51 3221 3168 21 0 0 0 chr6 48486141 48486162 -133929080 + AT_rich Low_complexity Low_complexity 1 21 0 384 234 158 82 chr6 48486205 48486262 -133928980 + MER5A DNA MER1_type 20 71 -118 2498 27 17 0 chr6 48486262 48486559 -133928683 + AluY SINE Alu 1 302 -9 384 234 158 82 chr6 48486559 48486659 -133928583 + MER5A DNA MER1_type 71 189 0 1527 97 170 8 chr6 48486724 48486983 -133928259 - AluSx SINE Alu -1 301 1 708 79 0 0 chr6 48487073 48487174 -133928068 - AluSx SINE Alu 0 312 212 882 42 0 34 chr6 48487176 48487295 -133927947 - AluSx SINE Alu -198 115 1 490 238 144 25 chr6 48487349 48487509 -133927733 - MIR SINE MIR 0 262 84 2258 77 3 3 chr6 48488586 48488896 -133926346 - AluSx SINE Alu -2 310 1 663 159 29 118 chr6 48489170 48489267 -133925975 + MER2 DNA MER2_type 2 80 -265 2262 60 0 0 chr6 48489267 48489573 -133925669 + AluY SINE Alu 1 306 0 663 159 29 118 chr6 48489573 48489644 -133925598 + MER2 DNA MER2_type 80 156 -189 207 0 0 0 chr6 48489649 48489672 -133925570 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1522 140 29 36 chr6 48489680 48489821 -133925421 - AluSx SINE Alu -36 276 136 1986 112 0 37 chr6 48489821 48490144 -133925098 - AluSx SINE Alu -1 311 1 1522 140 29 36 chr6 48490144 48490280 -133924962 - AluSx SINE Alu -176 136 1 189 0 0 0 chr6 48490368 48490389 -133924853 + (T)n Simple_repeat Simple_repeat 1 21 0 2126 104 0 3 chr6 48490406 48490695 -133924547 + AluSx SINE Alu 14 301 -11 2088 117 7 0 chr6 48490709 48491007 -133924235 + AluSx SINE Alu 1 300 -12 829 147 31 0 chr6 48491012 48491141 -133924101 - FRAM SINE Alu -35 141 9 235 167 24 0 chr6 48491156 48491198 -133924044 + MER2 DNA MER2_type 280 322 -23 334 296 100 46 chr6 48491859 48492099 -133923143 - L2 LINE L2 -209 3104 2852 255 335 71 13 chr6 48492245 48492400 -133922842 + L2 LINE L2 2590 2753 -561 1837 88 67 77 chr6 48493131 48493428 -133921814 + AluSc SINE Alu 1 294 -15 1860 57 52 9 chr6 48493438 48493668 -133921574 + AluY SINE Alu 55 294 -17 2447 87 0 0 chr6 48494797 48495095 -133920147 + AluSc SINE Alu 1 298 -11 2445 81 7 0 chr6 48495384 48495679 -133919563 + AluSp SINE Alu 1 297 -16 1952 141 17 20 chr6 48496242 48496541 -133918701 - AluSx SINE Alu -14 298 1 2326 113 3 3 chr6 48497242 48497544 -133917698 + AluSp SINE Alu 1 302 -11 1914 130 33 33 chr6 48499382 48499689 -133915553 - AluSx SINE Alu -5 307 1 2261 114 0 3 chr6 48499829 48500127 -133915115 + AluSg SINE Alu 1 297 -13 1390 234 53 62 chr6 48500145 48500186 -133915056 + L1MC4 LINE L1 7341 7381 -661 2384 94 0 13 chr6 48500186 48500493 -133914749 + AluSx SINE Alu 1 303 -9 1390 234 53 62 chr6 48500493 48500759 -133914483 + L1MC4 LINE L1 7381 7643 -399 1588 183 16 31 chr6 48500759 48501076 -133914166 + AluJb SINE Alu 1 312 0 1390 234 53 62 chr6 48501076 48501298 -133913944 + L1MC4 LINE L1 7643 7866 -176 1817 144 46 7 chr6 48501386 48501670 -133913572 + AluJb SINE Alu 1 295 -17 4537 190 20 47 chr6 48501754 48502750 -133912492 - LTR5 LTR ERVK 0 969 1 29655 191 8 17 chr6 48502758 48508457 -133906785 - HERVK14C LTR ERVK -29 7388 1875 2527 84 0 0 chr6 48508457 48508768 -133906474 - AluY SINE Alu 0 311 1 29655 191 8 17 chr6 48508768 48509903 -133905339 - HERVK14C LTR ERVK -5542 1875 732 4137 154 30 9 chr6 48509974 48510709 -133904533 - HERVK14C LTR ERVK -6485 758 9 4514 191 21 49 chr6 48510716 48511713 -133903529 - LTR5 LTR ERVK 0 969 1 1100 104 0 0 chr6 48511724 48511859 -133903383 + AluSp SINE Alu 1 135 -178 2581 55 3 10 chr6 48511859 48512168 -133903074 + AluY SINE Alu 1 307 -4 1283 244 65 129 chr6 48512172 48512482 -133902760 + MER21B LTR ERV1 21 349 -514 1622 195 3 10 chr6 48512482 48512779 -133902463 + AluJb SINE Alu 1 295 -17 2129 111 26 19 chr6 48512781 48513088 -133902154 + AluSc SINE Alu 1 309 0 1283 244 65 129 chr6 48513088 48513512 -133901730 + MER21B LTR ERV1 350 711 -152 224 284 39 10 chr6 48514006 48514106 -133901136 - MIR3 SINE MIR -141 67 2 1821 168 0 7 chr6 48514423 48514709 -133900533 + AluJb SINE Alu 1 284 -28 247 80 60 0 chr6 48514714 48514764 -133900478 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1025 124 0 0 chr6 48514767 48514904 -133900338 + AluSq/x SINE Alu 1 137 -175 2208 111 3 0 chr6 48514906 48515203 -133900039 + AluSx SINE Alu 6 303 -9 404 362 22 0 chr6 48515294 48515479 -133899763 + ERVL LTR ERVL 510 698 -5066 869 356 40 40 chr6 48515509 48516217 -133899025 + ERVL LTR ERVL 861 1568 -4196 1861 277 71 13 chr6 48516246 48516792 -133898450 + ERVL LTR ERVL 4070 4647 -1117 2313 77 0 48 chr6 48516856 48517168 -133898074 - AluSg SINE Alu -13 297 1 538 122 7 191 chr6 48517278 48517358 -133897884 - FLAM_C SINE Alu -187 125 82 2390 42 42 7 chr6 48517358 48517643 -133897599 - AluY SINE Alu -13 298 4 538 122 7 191 chr6 48517643 48517709 -133897533 - FLAM_C SINE Alu -230 82 6 1957 106 35 18 chr6 48517725 48518007 -133897235 - AluY SINE Alu -24 287 1 296 82 0 20 chr6 48518110 48518159 -133897083 + (TG)n Simple_repeat Simple_repeat 2 49 0 2577 72 0 0 chr6 48518286 48518592 -133896650 + AluSg SINE Alu 1 306 -4 341 213 93 9 chr6 48518636 48518744 -133896498 - L1ME LINE L1 -303 5818 5702 2627 56 7 0 chr6 48518799 48519105 -133896137 - AluSp SINE Alu -5 308 1 181 272 211 26 chr6 48519349 48519463 -133895779 + MIR SINE MIR 61 195 -67 2629 58 6 0 chr6 48520126 48520437 -133894805 + AluSp SINE Alu 1 313 0 447 81 0 0 chr6 48520485 48520547 -133894695 - AluJ/FLAM SINE Alu -232 80 19 1695 161 126 3 chr6 48520629 48520878 -133894364 + L1MB3 LINE L1 5711 6024 -159 2502 90 3 0 chr6 48520878 48521188 -133894054 + AluSx SINE Alu 1 311 -1 1695 161 126 3 chr6 48521188 48521318 -133893924 + L1MB3 LINE L1 6024 6137 -46 270 264 16 10 chr6 48521321 48521440 -133893802 + FAM SINE Alu 1 150 -25 2294 97 0 19 chr6 48521440 48521751 -133893491 - AluSg SINE Alu -5 305 1 1887 129 17 40 chr6 48521848 48522150 -133893092 + AluJb SINE Alu 1 295 -17 2335 103 0 0 chr6 48522152 48522453 -133892789 + AluSc SINE Alu 1 301 -8 1604 167 47 4 chr6 48522566 48522842 -133892400 + AluJb SINE Alu 2 289 -23 834 149 0 0 chr6 48522848 48522969 -133892273 + FRAM SINE Alu 43 163 -13 1757 175 3 29 chr6 48522989 48523304 -133891938 + AluJo SINE Alu 2 308 -4 2536 73 0 3 chr6 48523344 48523646 -133891596 - AluY SINE Alu -10 301 1 375 264 0 0 chr6 48523690 48523781 -133891461 + MIR SINE MIR 52 142 -120 392 67 17 0 chr6 48525257 48525317 -133889925 + (TTA)n Simple_repeat Simple_repeat 2 62 0 2226 101 0 3 chr6 48525319 48525605 -133889637 - AluSg SINE Alu -25 285 1 396 0 0 0 chr6 48525610 48525654 -133889588 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2058 125 7 0 chr6 48525654 48525933 -133889309 - AluSq SINE Alu -32 281 1 201 196 20 0 chr6 48525991 48526042 -133889200 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2186 112 3 3 chr6 48526057 48526352 -133888890 + AluSx SINE Alu 1 295 -17 2111 97 3 28 chr6 48526352 48526674 -133888568 + AluSg SINE Alu 1 316 0 2195 60 0 0 chr6 48526872 48527123 -133888119 - AluY SINE Alu -11 300 50 363 36 0 36 chr6 48527124 48527180 -133888062 - AluSc SINE Alu 0 299 246 1614 76 5 0 chr6 48527180 48527377 -133887865 - AluY SINE Alu -113 198 1 1877 174 0 10 chr6 48527515 48527819 -133887423 + AluJb SINE Alu 1 301 -11 1562 164 87 7 chr6 48527845 48528120 -133887122 + AluJo SINE Alu 1 297 -15 2520 71 0 0 chr6 48528122 48528433 -133886809 + AluY SINE Alu 1 311 0 2576 58 0 3 chr6 48528500 48528808 -133886434 - AluY SINE Alu -4 307 1 320 135 0 0 chr6 48528843 48528895 -133886347 + L1MB8 LINE L1 6117 6168 -10 2075 105 49 7 chr6 48528895 48529180 -133886062 - AluSx SINE Alu -15 297 1 2226 121 3 3 chr6 48529180 48529485 -133885757 - AluSx SINE Alu -7 305 1 2456 95 0 0 chr6 48529493 48529799 -133885443 - AluSc SINE Alu -3 306 1 21 36 0 0 chr6 48529807 48529835 -133885407 + AT_rich Low_complexity Low_complexity 1 28 0 1770 145 46 16 chr6 48529835 48530138 -133885104 + AluSx SINE Alu 1 312 0 315 202 45 34 chr6 48530142 48530231 -133885011 - L1MC4 LINE L1 -20 8022 7933 265 323 62 0 chr6 48530357 48530453 -133884789 + L2 LINE L2 3163 3264 -49 283 234 13 13 chr6 48530470 48530547 -133884695 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 2305 81 37 10 chr6 48530550 48530848 -133884394 + AluY SINE Alu 1 306 -5 258 265 18 0 chr6 48530851 48531017 -133884225 + (TGGA)n Simple_repeat Simple_repeat 4 172 0 348 239 339 0 chr6 48531758 48531888 -133883354 - MIR SINE MIR -3 259 86 2499 78 0 0 chr6 48532774 48533070 -133882172 + AluSg SINE Alu 1 296 -14 197 286 0 0 chr6 48534309 48534358 -133880884 - L2 LINE L2 -2 3311 3263 1996 151 0 3 chr6 48535078 48535409 -133879833 - AluSx SINE Alu 0 330 1 2334 85 16 10 chr6 48535769 48536076 -133879166 - AluSg SINE Alu 0 310 2 2318 96 0 3 chr6 48536077 48536370 -133878872 - AluSg SINE Alu -18 292 1 1205 168 118 46 chr6 48536375 48536655 -133878587 - AluJo SINE Alu 0 312 13 237 298 33 66 chr6 48536691 48536812 -133878430 - L2 LINE L2 -20 3293 3177 214 271 57 79 chr6 48536874 48537014 -133878228 - MIR SINE MIR -43 219 83 243 0 0 0 chr6 48537703 48537730 -133877512 + (CTG)n Simple_repeat Simple_repeat 3 29 0 249 250 279 0 chr6 48538352 48538456 -133876786 + L2 LINE L2 3125 3257 -15 2189 130 7 0 chr6 48538965 48539273 -133875969 - AluSx SINE Alu -2 310 1 856 148 101 7 chr6 48539311 48539460 -133875782 - AluSp SINE Alu -14 299 137 2083 102 46 0 chr6 48539461 48539744 -133875498 - AluSx SINE Alu -16 296 1 2240 121 3 0 chr6 48539780 48540106 -133875136 - AluSx SINE Alu 0 312 1 245 275 208 13 chr6 48541346 48541495 -133873747 + L2 LINE L2 3127 3304 -9 675 251 74 35 chr6 48541627 48541966 -133873276 + L1MC4 LINE L1 7690 8041 -1 1982 106 69 0 chr6 48541974 48542248 -133872994 + AluSp SINE Alu 3 295 -18 1111 81 0 0 chr6 48542267 48542415 -133872827 - LTR47A LTR ERVL -304 148 1 273 303 25 49 chr6 48542796 48542918 -133872324 + MIR3 SINE MIR 45 163 -45 2318 92 0 10 chr6 48542956 48543251 -133871991 - AluSq SINE Alu -21 292 1 510 284 39 35 chr6 48544456 48544612 -133870630 + L1MC4a LINE L1 5704 5863 -1945 2113 134 3 7 chr6 48544612 48544919 -133870323 - AluSq SINE Alu -7 306 1 510 284 39 35 chr6 48544919 48544994 -133870248 + L1MC4a LINE L1 5863 5936 -1872 1841 136 73 0 chr6 48545404 48545676 -133869566 + AluSx SINE Alu 1 292 -20 252 200 69 5 chr6 48546015 48546115 -133869127 + MIR SINE MIR 85 194 -68 235 266 70 101 chr6 48547963 48548162 -133867080 - MIR SINE MIR -57 205 13 2158 109 0 7 chr6 48548270 48548583 -133866659 - AluSg1 SINE Alu 0 311 1 2331 108 3 16 chr6 48549248 48549564 -133865678 - AluSx SINE Alu 0 312 1 1522 160 44 51 chr6 48549576 48549747 -133865495 - AluJb SINE Alu -10 292 122 1340 184 6 105 chr6 48549747 48549888 -133865354 + AluJb SINE Alu 3 94 -218 2096 136 7 0 chr6 48549888 48550182 -133865060 - AluSx SINE Alu -16 296 1 1340 184 6 105 chr6 48550182 48550372 -133864870 + AluJb SINE Alu 94 301 -11 1522 160 44 51 chr6 48550372 48550494 -133864748 - AluJb SINE Alu -180 122 1 580 161 119 0 chr6 48550538 48550656 -133864586 + FLAM_C SINE Alu 2 133 0 771 148 0 15 chr6 48550888 48551023 -133864219 - FLAM_C SINE Alu 0 133 1 646 125 44 66 chr6 48551209 48551345 -133863897 + FLAM_A SINE Alu 1 133 0 373 153 0 28 chr6 48551405 48551477 -133863765 + AluJ/FRAM SINE Alu 233 302 0 274 252 143 50 chr6 48551638 48551757 -133863485 - MER5A DNA MER1_type -4 185 56 2226 110 3 3 chr6 48552003 48552302 -133862940 + AluSg SINE Alu 1 299 -11 274 214 114 0 chr6 48552418 48552488 -133862754 - MER91B DNA MER1_type -16 174 97 2014 88 110 0 chr6 48552491 48552763 -133862479 + AluSx SINE Alu 2 303 -9 317 277 0 12 chr6 48552788 48552871 -133862371 - MER91B DNA MER1_type -61 129 48 2420 70 3 25 chr6 48553141 48553455 -133861787 + AluY SINE Alu 1 307 -4 859 175 148 21 chr6 48553455 48553644 -133861598 - Tigger2a DNA MER2_type -218 216 4 2568 50 3 3 chr6 48553656 48553955 -133861287 - AluY SINE Alu -12 299 1 859 147 32 119 chr6 48553962 48554012 -133861230 + Tigger2a DNA MER2_type 246 299 -2419 2203 105 3 14 chr6 48554012 48554307 -133860935 + AluSx SINE Alu 1 292 -20 859 147 32 119 chr6 48554307 48554403 -133860839 + Tigger2a DNA MER2_type 299 369 -2349 1955 179 0 3 chr6 48554403 48554715 -133860527 + AluJb SINE Alu 1 311 -1 859 147 32 119 chr6 48554715 48554785 -133860457 + Tigger2a DNA MER2_type 369 444 0 1875 101 116 8 chr6 48554978 48555246 -133859996 - AluSg1 SINE Alu -12 297 1 1202 154 98 14 chr6 48555290 48555504 -133859738 + AluJb SINE Alu 70 301 -11 2582 58 0 0 chr6 48555510 48555804 -133859438 - AluY SINE Alu -17 294 1 333 207 0 0 chr6 48555862 48555944 -133859298 - L1PB4 LINE L1 -1 6155 6074 647 178 31 8 chr6 48556294 48556423 -133858819 + FLAM_A SINE Alu 1 132 -1 1706 103 18 0 chr6 48556652 48556876 -133858366 - AluSg/x SINE Alu 0 312 85 852 145 23 0 chr6 48556970 48557101 -133858141 + FLAM_C SINE Alu 1 134 -9 1717 174 43 0 chr6 48557301 48557583 -133857659 + AluJo SINE Alu 2 295 -17 2324 116 0 0 chr6 48557820 48558131 -133857111 - AluSx SINE Alu -1 311 1 1574 84 5 10 chr6 48558147 48558349 -133856893 + AluSg SINE Alu 1 201 -109 1968 132 0 7 chr6 48558349 48558627 -133856615 - AluSx SINE Alu -32 280 3 2263 117 0 7 chr6 48558744 48559044 -133856198 - AluSx SINE Alu -14 298 1 1393 94 0 0 chr6 48559100 48559271 -133855971 + AluSp SINE Alu 129 299 -14 1876 96 125 26 chr6 48559320 48559417 -133855825 - MER51B LTR ERV1 0 377 291 2500 69 10 3 chr6 48559417 48559722 -133855520 + AluY SINE Alu 1 307 -4 1876 96 125 26 chr6 48559722 48559967 -133855275 - MER51B LTR ERV1 -86 291 1 3370 138 125 131 chr6 48559971 48560293 -133854949 - MER51B-int LTR ERV1 -3 7813 7490 2198 126 0 7 chr6 48560293 48560594 -133854648 + AluSg SINE Alu 1 299 -11 3370 138 125 131 chr6 48560594 48561134 -133854108 - MER51B-int LTR ERV1 -326 7490 6790 2006 68 4 0 chr6 48561134 48561371 -133853871 + AluSp SINE Alu 1 238 -75 3370 138 125 131 chr6 48561371 48561631 -133853611 - MER51B-int LTR ERV1 -1026 6790 6530 2219 87 6 58 chr6 48561631 48561942 -133853300 - AluSq SINE Alu -18 295 1 1550 151 12 4 chr6 48561942 48562201 -133853041 - MER51B-int LTR ERV1 -1177 6360 6100 1473 99 42 0 chr6 48562201 48562393 -133852849 + AluSq SINE Alu 1 200 -113 4612 39 7 0 chr6 48562400 48562972 -133852270 + LTR10C LTR ERV1 11 586 -5 39 22 0 0 chr6 48562972 48563018 -133852224 + AT_rich Low_complexity Low_complexity 1 46 0 2302 62 10 3 chr6 48563508 48563796 -133851446 - AluY SINE Alu -21 290 1 1858 115 19 0 chr6 48564145 48564405 -133850837 + AluSp SINE Alu 1 265 -48 2217 94 3 26 chr6 48564960 48565267 -133849975 - AluY SINE Alu -11 300 1 2327 92 0 3 chr6 48565269 48565563 -133849679 - AluSp SINE Alu -20 293 1 643 84 11 0 chr6 48565588 48565683 -133849559 + AluSg/x SINE Alu 199 294 -18 518 176 25 67 chr6 48565690 48565849 -133849393 - MER4A LTR ERV1 -172 492 282 2585 126 34 81 chr6 48565902 48566072 -133849170 - MER51-int LTR ERV1 -6321 1495 1319 2331 97 13 3 chr6 48566072 48566370 -133848872 - AluSg SINE Alu -8 302 2 2585 126 34 81 chr6 48566370 48566592 -133848650 - MER51-int LTR ERV1 -6497 1319 1088 2423 103 3 0 chr6 48566592 48566904 -133848338 - AluSp SINE Alu 0 313 1 2585 126 34 81 chr6 48566904 48566928 -133848314 - MER51-int LTR ERV1 -6728 1088 1064 2073 100 0 0 chr6 48566928 48567188 -133848054 - AluSg SINE Alu -20 290 31 2585 126 34 81 chr6 48567188 48567303 -133847939 - MER51-int LTR ERV1 -6752 1064 987 1438 294 3 85 chr6 48567303 48567633 -133847609 + AluSg SINE Alu 1 303 -7 1115 56 6 19 chr6 48567634 48567696 -133847546 - MER51B-int LTR ERV1 -7656 160 99 324 48 0 0 chr6 48567696 48567738 -133847504 + (GA)n Simple_repeat Simple_repeat 1 42 0 1115 56 6 19 chr6 48567738 48567837 -133847405 - MER51B-int LTR ERV1 -7717 99 1 2032 96 116 26 chr6 48567837 48568182 -133847060 - MER51B LTR ERV1 0 377 2 1397 97 9 53 chr6 48568198 48568424 -133846818 - AluSg/x SINE Alu -1 309 94 315 319 46 50 chr6 48569516 48569742 -133845500 - MIR SINE MIR -2 260 34 2594 65 0 0 chr6 48569742 48570050 -133845192 - AluY SINE Alu -3 308 1 315 319 46 50 chr6 48570050 48570083 -133845159 - MIR SINE MIR -228 34 2 276 320 78 0 chr6 48570102 48570205 -133845037 + MIR SINE MIR 104 214 -48 813 109 8 39 chr6 48571678 48571806 -133843436 - FLAM_A SINE Alu -3 139 16 2497 75 13 0 chr6 48574029 48574334 -133840908 - AluSp SINE Alu -1 312 4 2335 103 0 10 chr6 48575015 48575317 -133839925 - AluSq SINE Alu -14 299 1 266 218 0 0 chr6 48577521 48577576 -133837666 - MER5B DNA MER1_type -1 177 123 786 218 48 0 chr6 48577607 48577795 -133837447 + L1MB7 LINE L1 5963 6159 -25 400 296 52 9 chr6 48577834 48577949 -133837293 - MER5B DNA MER1_type -48 130 11 1707 144 0 0 chr6 48579556 48579806 -133835436 + AluY SINE Alu 1 250 -61 2227 121 3 0 chr6 48579914 48580219 -133835023 + AluY SINE Alu 1 306 -5 2295 115 0 0 chr6 48580440 48580736 -133834506 - AluSx SINE Alu -16 296 1 349 200 17 0 chr6 48580861 48580921 -133834321 - AluSp SINE Alu -114 189 129 1720 144 0 41 chr6 48580994 48581285 -133833957 + AluJb SINE Alu 1 279 -33 2671 57 0 13 chr6 48581870 48582185 -133833057 - AluY SINE Alu 0 311 1 290 132 434 0 chr6 48583006 48583082 -133832160 + MER3 DNA MER1_type 2 110 -99 1293 120 0 94 chr6 48583137 48583317 -133831925 - AluSg/x SINE Alu -14 298 143 1993 81 18 29 chr6 48583317 48583590 -133831652 - AluY SINE Alu -15 296 27 1293 120 0 94 chr6 48583590 48583643 -133831599 - AluSg/x SINE Alu -169 143 87 364 118 0 53 chr6 48583644 48583720 -133831522 + MER3 DNA MER1_type 136 207 -2 2177 136 0 0 chr6 48583785 48584087 -133831155 - AluSx SINE Alu -10 302 1 1259 111 0 0 chr6 48584676 48584838 -133830404 - AluSg/x SINE Alu -11 299 138 1648 168 7 43 chr6 48585280 48585449 -133829793 - AluJb SINE Alu -16 296 141 2112 125 7 0 chr6 48585449 48585738 -133829504 - AluSq SINE Alu -20 293 3 1648 168 7 43 chr6 48585738 48585871 -133829371 - AluJb SINE Alu -171 141 5 2298 117 3 0 chr6 48586089 48586398 -133828844 + AluSx SINE Alu 1 310 -2 736 188 66 33 chr6 48586407 48586588 -133828654 + AluJo SINE Alu 125 311 -1 238 281 55 47 chr6 48587200 48587328 -133827914 + L2 LINE L2 2454 2582 -732 2318 105 3 0 chr6 48587367 48587672 -133827570 - AluSx SINE Alu -6 306 1 602 123 41 8 chr6 48587695 48587817 -133827425 - L1PB1 LINE L1 -3 6148 6023 2551 44 0 7 chr6 48587818 48588116 -133827126 - AluY SINE Alu -15 296 1 1729 98 27 110 chr6 48588151 48588479 -133826763 - AluYb8 SINE Alu -13 305 5 1050 118 0 0 chr6 48588482 48588617 -133826625 - AluSg1 SINE Alu -174 135 1 2405 101 0 0 chr6 48588626 48588933 -133826309 - AluSx SINE Alu -2 310 4 210 272 12 12 chr6 48589788 48589869 -133825373 + (CCGGG)n Simple_repeat Simple_repeat 5 85 0 590 231 38 0 chr6 48590509 48590669 -133824573 - MIR3 SINE MIR -5 203 38 2516 82 3 0 chr6 48590963 48591268 -133823974 - AluSp SINE Alu -7 306 1 547 270 66 0 chr6 48592672 48592824 -133822418 - MIR SINE MIR -97 165 4 919 318 147 24 chr6 48593427 48594082 -133821160 - L3 LINE CR1 -1 1576 842 259 302 65 58 chr6 48594242 48594381 -133820861 - MER20B DNA MER1_type -620 163 24 2458 67 0 6 chr6 48595891 48596203 -133819039 - AluSq SINE Alu -3 310 1 197 392 35 21 chr6 48596236 48596379 -133818863 + L2 LINE L2 3101 3245 -27 231 296 42 0 chr6 48596557 48596628 -133818614 + L2 LINE L2 2987 3060 -212 201 196 0 0 chr6 48596838 48596884 -133818358 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 240 273 130 0 chr6 48596894 48596971 -133818271 - MIR3 SINE MIR -18 190 104 2413 58 0 0 chr6 48597259 48597550 -133817692 - AluY SINE Alu -20 291 1 1924 174 51 53 chr6 48597680 48597723 -133817519 - MLT1C LTR MaLR 0 467 425 1777 142 6 32 chr6 48597723 48598034 -133817208 + AluJo SINE Alu 1 303 -9 1924 174 51 53 chr6 48598034 48598070 -133817172 - MLT1C LTR MaLR -42 425 390 2178 101 0 16 chr6 48598070 48598206 -133817036 + AluSq SINE Alu 1 138 -175 2279 95 0 0 chr6 48598206 48598512 -133816730 + AluSq SINE Alu 1 306 -7 2178 101 0 16 chr6 48598512 48598692 -133816550 + AluSq SINE Alu 138 312 -1 1924 174 51 53 chr6 48598692 48599060 -133816182 - MLT1C LTR MaLR -77 390 20 764 219 42 63 chr6 48599088 48599218 -133816024 - MIR SINE MIR -28 234 110 1918 95 62 4 chr6 48599218 48599491 -133815751 + AluSx SINE Alu 3 291 -21 764 219 42 63 chr6 48599491 48599598 -133815644 - MIR SINE MIR -152 110 2 2119 81 0 44 chr6 48599729 48600027 -133815215 + AluSq SINE Alu 16 300 -13 1815 172 0 6 chr6 48600310 48600624 -133814618 - AluJo SINE Alu 0 312 1 1326 116 33 19 chr6 48600742 48600957 -133814285 - AluSg/x SINE Alu -10 300 83 620 160 20 0 chr6 48600957 48601057 -133814185 - FRAM SINE Alu -62 114 13 1652 95 80 4 chr6 48601073 48601335 -133813907 - AluY SINE Alu -29 282 1 866 46 0 9 chr6 48601373 48601481 -133813761 + AluY SINE Alu 1 107 -204 1993 114 0 0 chr6 48601581 48601852 -133813390 - AluSg SINE Alu -38 272 2 963 120 0 0 chr6 48602096 48602229 -133813013 + AluJb SINE Alu 1 133 -179 2227 104 0 0 chr6 48602233 48602531 -133812711 + AluSx SINE Alu 1 298 -14 1988 131 20 3 chr6 48603036 48603341 -133811901 - AluSx SINE Alu -2 310 1 2282 76 0 0 chr6 48603423 48603714 -133811528 - AluSg SINE Alu -19 291 1 1998 134 0 16 chr6 48603717 48604023 -133811219 - AluSx SINE Alu -11 301 1 183 400 127 11 chr6 48604327 48604602 -133810640 - L2 LINE L2 -2 3311 3005 1947 123 55 0 chr6 48604626 48604919 -133810323 - AluSp SINE Alu -4 309 1 2273 71 3 14 chr6 48605083 48605379 -133809863 + AluSg SINE Alu 1 293 -17 250 100 0 0 chr6 48605390 48605430 -133809812 + Alu SINE Alu 256 295 -6 579 225 116 29 chr6 48605454 48605627 -133809615 - MIR SINE MIR -71 191 4 2167 106 0 3 chr6 48605641 48605943 -133809299 - AluSg SINE Alu -9 301 1 2128 119 3 0 chr6 48606621 48606932 -133808310 + AluSx SINE Alu 1 312 0 2194 36 65 0 chr6 48607221 48607498 -133807744 - AluY SINE Alu -16 295 1 1909 124 3 23 chr6 48607504 48607803 -133807439 - AluSx SINE Alu -19 293 1 1988 94 40 17 chr6 48608230 48608529 -133806713 - AluSx SINE Alu -6 306 1 1345 187 6 73 chr6 48608771 48609086 -133806156 - AluJo SINE Alu -18 294 1 2380 79 0 9 chr6 48609086 48609402 -133805840 - AluSq SINE Alu 0 313 1 397 174 39 214 chr6 48609411 48609692 -133805550 - L1ME3 LINE L1 -2 6160 5929 324 111 0 0 chr6 48609939 48609993 -133805249 + (CCCCAG)n Simple_repeat Simple_repeat 3 56 0 180 0 0 0 chr6 48611124 48611144 -133804098 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2165 92 0 14 chr6 48613265 48613559 -133801683 + AluSg SINE Alu 1 290 -20 244 238 83 24 chr6 48616869 48616953 -133798289 - LTR50 LTR ERVL -552 243 155 2187 101 3 13 chr6 48619048 48619356 -133795886 + AluSq SINE Alu 1 305 -8 2183 92 3 0 chr6 48619421 48619713 -133795529 - AluSc SINE Alu -16 293 1 1758 140 24 27 chr6 48623375 48623668 -133791574 + AluSx SINE Alu 1 292 -20 23 0 0 0 chr6 48624745 48624768 -133790474 + AT_rich Low_complexity Low_complexity 1 23 0 39 38 0 0 chr6 48625152 48625205 -133790037 + GC_rich Low_complexity Low_complexity 1 53 0 2342 50 23 0 chr6 48625579 48625878 -133789364 - AluY SINE Alu -5 306 1 1391 139 70 73 chr6 48625889 48626064 -133789178 - AluJb SINE Alu 0 302 128 231 36 0 0 chr6 48626064 48626092 -133789150 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1391 139 70 73 chr6 48626092 48626113 -133789129 - AluJb SINE Alu -174 128 108 2425 37 10 0 chr6 48626113 48626411 -133788831 - AluY SINE Alu -10 301 1 1391 139 70 73 chr6 48626411 48626515 -133788727 - AluJb SINE Alu -194 108 2 212 271 34 17 chr6 48626537 48626596 -133788646 - L2 LINE L2 -44 3269 3210 1741 149 3 7 chr6 48626596 48626892 -133788350 + AluJo SINE Alu 1 295 -17 1945 107 14 0 chr6 48626905 48627186 -133788056 + AluSc SINE Alu 12 296 -13 235 203 34 0 chr6 48627225 48627284 -133787958 + L1MB7 LINE L1 6105 6165 -19 680 254 148 64 chr6 48627293 48627339 -133787903 - L2 LINE L2 -173 3140 3099 2099 106 10 0 chr6 48627339 48627632 -133787610 - AluSx SINE Alu -14 298 3 680 254 148 64 chr6 48627632 48628134 -133787108 - L2 LINE L2 -214 3099 2566 2116 118 3 3 chr6 48628821 48629126 -133786116 + AluSx SINE Alu 1 305 -7 2296 88 0 7 chr6 48629130 48629435 -133785807 + AluY SINE Alu 1 303 -8 385 260 32 32 chr6 48629752 48629866 -133785376 + MIR SINE MIR 53 169 -93 1683 164 7 17 chr6 48629866 48630159 -133785083 + AluSx SINE Alu 1 290 -22 385 260 32 32 chr6 48630159 48630198 -133785044 + MIR SINE MIR 168 206 -56 905 94 16 0 chr6 48630203 48630331 -133784911 + AluSc SINE Alu 1 130 -179 1517 104 5 14 chr6 48630333 48630553 -133784689 + AluSc SINE Alu 71 288 -21 354 23 0 0 chr6 48631243 48631286 -133783956 + (CA)n Simple_repeat Simple_repeat 2 44 0 1963 129 3 16 chr6 48631526 48631837 -133783405 + AluSg SINE Alu 1 307 -3 2239 93 0 0 chr6 48631848 48632139 -133783103 + AluSg SINE Alu 1 291 -19 2192 95 0 7 chr6 48632149 48632443 -133782799 + AluSx SINE Alu 1 292 -20 1665 141 31 53 chr6 48633081 48633400 -133781842 - AluSx SINE Alu 0 312 1 2117 84 4 0 chr6 48633763 48634036 -133781206 + AluSq SINE Alu 1 274 -39 2382 65 0 0 chr6 48634068 48634361 -133780881 + AluSg SINE Alu 1 293 -17 295 227 30 0 chr6 48634361 48634421 -133780821 + L1MEd LINE L1 568 629 -5490 290 135 0 0 chr6 48634432 48634484 -133780758 - Alu SINE Alu 0 300 249 312 257 96 56 chr6 48634487 48634605 -133780637 + L1MEd LINE L1 783 895 -5224 2349 83 0 10 chr6 48634605 48634919 -133780323 + AluY SINE Alu 1 311 0 312 257 96 56 chr6 48634919 48634945 -133780297 + L1MEd LINE L1 895 919 -5200 2242 95 0 3 chr6 48634945 48635241 -133780001 + AluSq SINE Alu 1 295 -18 312 257 96 56 chr6 48635241 48635398 -133779844 + L1MEd LINE L1 919 1097 -5022 1399 208 24 0 chr6 48635398 48635696 -133779546 + AluJo SINE Alu 1 305 -7 1816 143 14 0 chr6 48635760 48636046 -133779196 - AluSx SINE Alu -22 290 1 204 67 0 0 chr6 48636049 48636079 -133779163 + (T)n Simple_repeat Simple_repeat 1 30 0 802 118 19 9 chr6 48636121 48636282 -133778960 + AluJb SINE Alu 85 292 -20 737 211 30 0 chr6 48636309 48636442 -133778800 + FAM SINE Alu 29 165 -20 2365 79 0 0 chr6 48636453 48636756 -133778486 + AluY SINE Alu 1 303 -8 1189 158 89 19 chr6 48637395 48637664 -133777578 - L1MB8 LINE L1 -10 6168 5879 2287 81 3 0 chr6 48638067 48638362 -133776880 + AluSp SINE Alu 1 296 -17 2272 96 0 0 chr6 48638362 48638664 -133776578 + AluSx SINE Alu 1 302 -10 1669 131 16 64 chr6 48639676 48639798 -133775444 - 7SLRNA srpRNA srpRNA -21 299 173 2276 71 0 0 chr6 48639798 48640115 -133775127 - AluSc SINE Alu 0 317 1 1669 131 16 64 chr6 48640115 48640303 -133774939 - 7SLRNA srpRNA srpRNA -147 173 3 192 77 0 0 chr6 48640317 48640343 -133774899 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 192 319 101 34 chr6 48640737 48640856 -133774386 - MIR SINE MIR -122 140 14 2257 82 13 3 chr6 48643214 48643519 -133771723 - AluSx SINE Alu -4 308 1 180 152 0 0 chr6 48643794 48643827 -133771415 + CT-rich Low_complexity Low_complexity 1 33 0 1569 180 40 7 chr6 48644807 48645107 -133770135 + AluJb SINE Alu 1 310 -2 259 231 19 0 chr6 48645107 48645159 -133770083 + polypurine Low_complexity Low_complexity 2 54 0 551 222 12 12 chr6 48645159 48645208 -133770034 + GA-rich Low_complexity Low_complexity 3 51 -122 2331 92 0 0 chr6 48645208 48645514 -133769728 + AluSg SINE Alu 5 310 0 551 222 12 12 chr6 48645514 48645635 -133769607 + GA-rich Low_complexity Low_complexity 50 173 0 2150 106 3 19 chr6 48645810 48646121 -133769121 - AluSx SINE Alu -6 306 1 831 168 8 0 chr6 48647227 48647358 -133767884 + FLAM_C SINE Alu 1 132 -1 2114 102 6 41 chr6 48647376 48647521 -133767721 + AluSp SINE Alu 1 150 -163 2179 95 3 0 chr6 48647521 48647831 -133767411 + AluSp SINE Alu 1 311 0 2114 102 6 41 chr6 48647831 48647998 -133767244 + AluSp SINE Alu 150 303 -10 185 328 52 0 chr6 48650658 48650716 -133764526 - L2 LINE L2 -28 3285 3225 454 290 112 8 chr6 48651255 48651514 -133763728 + L1MC4a LINE L1 5915 6200 -1608 2341 70 6 22 chr6 48652237 48652552 -133762690 - AluY SINE Alu -1 310 1 513 0 0 0 chr6 48654030 48654087 -133761155 + (CA)n Simple_repeat Simple_repeat 2 58 0 205 156 0 0 chr6 48655389 48655421 -133759821 + (CA)n Simple_repeat Simple_repeat 2 33 0 245 350 0 21 chr6 48657491 48657588 -133757654 - MIR3 SINE MIR -17 191 97 861 102 8 8 chr6 48658150 48658277 -133756965 + AluJo SINE Alu 15 141 -171 1716 144 43 0 chr6 48658277 48658555 -133756687 + AluJo SINE Alu 1 290 -22 2088 104 14 0 chr6 48658563 48658852 -133756390 + AluSg SINE Alu 1 293 -17 2349 74 3 0 chr6 48660156 48660453 -133754789 - AluY SINE Alu -13 298 1 653 146 57 41 chr6 48660533 48660656 -133754586 - FLAM_C SINE Alu -17 126 2 1927 128 3 10 chr6 48660675 48660828 -133754414 - AluSx SINE Alu -25 287 135 1970 115 10 24 chr6 48660828 48661124 -133754118 - AluSx SINE Alu -20 292 1 1927 128 3 10 chr6 48661124 48661259 -133753983 - AluSx SINE Alu -177 135 1 467 228 267 10 chr6 48662324 48662526 -133752716 + MIR SINE MIR 6 259 -3 1599 231 39 47 chr6 48665177 48665737 -133749505 - L2 LINE L2 -3 3310 2761 2093 94 3 3 chr6 48665737 48666024 -133749218 - AluSg SINE Alu -23 287 1 1599 231 39 47 chr6 48666024 48666268 -133748974 - L2 LINE L2 -552 2761 2517 490 288 92 13 chr6 48666806 48666959 -133748283 - L2 LINE L2 0 3272 3108 2286 94 0 0 chr6 48667035 48667334 -133747908 - AluSq SINE Alu -14 299 1 1636 147 0 4 chr6 48667366 48667618 -133747624 - AluSq SINE Alu -62 251 1 1286 151 0 23 chr6 48667808 48668027 -133747215 + AluJo SINE Alu 87 300 -12 2418 75 3 0 chr6 48668546 48668854 -133746388 - AluSp SINE Alu -4 309 1 462 297 39 0 chr6 48669346 48669474 -133745768 - L2 LINE L2 -7 3265 3133 280 293 132 0 chr6 48669483 48669589 -133745653 + L2 LINE L2 3153 3272 0 240 230 152 25 chr6 48670725 48670929 -133744313 - MER20B DNA MER1_type -1 782 553 2235 60 6 48 chr6 48670983 48671299 -133743943 + AluY SINE Alu 3 305 -6 2788 10 0 0 chr6 48671311 48671622 -133743620 + AluYa5 SINE Alu 1 311 0 2211 97 7 0 chr6 48671672 48671971 -133743271 + AluSq SINE Alu 1 301 -12 1945 131 3 13 chr6 48672006 48672304 -133742938 + AluSx SINE Alu 1 295 -17 1970 149 0 0 chr6 48672306 48672639 -133742603 + AluSx SINE Alu 1 312 0 1929 144 0 0 chr6 48672713 48673025 -133742217 - AluSx SINE Alu 0 312 1 2200 81 14 7 chr6 48673031 48673328 -133741914 - AluSp SINE Alu -14 299 1 219 69 0 0 chr6 48673576 48673605 -133741637 + (A)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr6 48674681 48674701 -133740541 + (A)n Simple_repeat Simple_repeat 1 20 0 281 274 231 24 chr6 48676038 48676250 -133738992 - MER112 DNA MER1_type 0 260 5 2273 92 13 0 chr6 48676849 48677154 -133738088 + AluSq SINE Alu 1 309 -4 224 165 0 63 chr6 48679703 48679782 -133735460 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 552 190 7 92 chr6 48682600 48682666 -133732576 + MER2 DNA MER2_type 3 52 -293 2251 45 0 103 chr6 48682666 48682996 -133732246 + AluY SINE Alu 1 296 -15 552 190 7 92 chr6 48682996 48683071 -133732171 + MER2 DNA MER2_type 52 132 -213 830 176 18 12 chr6 48683071 48683236 -133732006 - FRAM SINE Alu -11 165 1 374 94 0 167 chr6 48683237 48683270 -133731972 + MER2 DNA MER2_type 122 159 -186 1505 168 43 11 chr6 48683270 48683550 -133731692 + AluJo SINE Alu 14 302 -10 2387 71 0 0 chr6 48683551 48683848 -133731394 + AluY SINE Alu 1 297 -14 374 94 0 167 chr6 48683848 48683908 -133731334 + MER2 DNA MER2_type 158 201 -144 2328 78 0 0 chr6 48684140 48684434 -133730808 + AluSx SINE Alu 1 294 -18 207 0 0 0 chr6 48684435 48684458 -133730784 + (CA)n Simple_repeat Simple_repeat 2 24 0 2097 126 3 0 chr6 48684875 48685185 -133730057 - AluSx SINE Alu -1 311 1 2330 76 0 7 chr6 48685654 48685956 -133729286 - AluSg SINE Alu -10 300 1 216 273 55 0 chr6 48685956 48686011 -133729231 + MER5A DNA MER1_type 126 183 -6 215 351 32 0 chr6 48687434 48687528 -133727714 + MER5A DNA MER1_type 44 140 -49 1799 157 0 38 chr6 48687604 48687923 -133727319 - AluJo SINE Alu -5 307 1 234 226 16 16 chr6 48687926 48687988 -133727254 + MER5A DNA MER1_type 128 189 0 347 373 0 0 chr6 48688479 48688613 -133726629 + MIR SINE MIR 31 164 -98 1917 106 58 0 chr6 48688753 48689027 -133726215 - AluSg SINE Alu -20 290 1 2385 73 3 0 chr6 48689132 48689435 -133725807 + AluSp SINE Alu 1 304 -9 438 225 179 73 chr6 48689986 48690038 -133725204 - MER91A DNA MER1_type -10 186 141 1915 120 6 35 chr6 48690038 48690354 -133724888 + AluJb SINE Alu 5 311 -1 438 225 179 73 chr6 48690354 48690452 -133724790 - MER91A DNA MER1_type -55 141 20 307 327 0 18 chr6 48691056 48691169 -133724073 + MIR SINE MIR 18 128 -80 192 307 93 27 chr6 48691421 48691496 -133723746 - MIR SINE MIR -121 141 62 1763 146 0 27 chr6 48691502 48691796 -133723446 + AluJo SINE Alu 7 292 -20 1878 129 11 0 chr6 48691893 48692214 -133723028 + AluSg SINE Alu 1 324 0 451 262 50 35 chr6 48694564 48694629 -133720613 + MIR SINE MIR 56 119 -143 2040 132 0 19 chr6 48694629 48694947 -133720295 - AluSx SINE Alu 0 312 1 451 262 50 35 chr6 48694947 48695022 -133720220 + MIR SINE MIR 119 198 -64 271 241 0 13 chr6 48695022 48695101 -133720141 + HsTC2 DNA Tc2 1 78 -1820 1114 178 51 0 chr6 48695103 48695300 -133719942 + Tigger7 DNA MER2_type 1 207 -526 2210 108 0 0 chr6 48695336 48695641 -133719601 - AluSg SINE Alu -5 305 1 1719 144 29 11 chr6 48695653 48695931 -133719311 - AluJo SINE Alu -11 301 19 726 145 21 21 chr6 48695934 48696079 -133719163 + Tigger7 DNA MER2_type 2343 2487 0 245 271 35 12 chr6 48696079 48696155 -133719087 + HsTC2c DNA Tc2 621 698 -31 1476 74 0 0 chr6 48696664 48696839 -133718403 - AluSq SINE Alu -7 306 132 2595 162 92 60 chr6 48697158 48697785 -133717457 - MER51A LTR ERV1 0 640 1 2373 65 3 45 chr6 48697948 48698258 -133716984 - AluY SINE Alu -14 297 1 1863 118 4 0 chr6 48698297 48698552 -133716690 + AluSx SINE Alu 55 310 -2 2323 98 0 37 chr6 48698558 48698883 -133716359 + AluSp SINE Alu 1 313 0 571 263 34 6 chr6 48700766 48700941 -133714301 - L1MC/D LINE L1 -2029 5779 5600 251 264 69 0 chr6 48701491 48701563 -133713679 + MIR SINE MIR 106 182 -80 2296 102 7 0 chr6 48701841 48702136 -133713106 - AluSx SINE Alu -15 297 1 27 29 0 0 chr6 48702532 48702566 -133712676 + AT_rich Low_complexity Low_complexity 1 34 0 1896 143 48 10 chr6 48702709 48703002 -133712240 - AluJb SINE Alu -8 304 1 243 331 80 17 chr6 48703003 48703178 -133712064 - L2 LINE L2 -13 3300 3115 551 156 0 0 chr6 48703269 48703359 -133711883 + AluS SINE Alu 2 91 -221 838 112 280 7 chr6 48703374 48703517 -133711725 - AluSp SINE Alu -19 294 113 252 123 281 0 chr6 48703521 48703578 -133711664 + 7SLRNA srpRNA srpRNA 237 309 -11 2417 95 0 0 chr6 48703582 48703878 -133711364 + AluY SINE Alu 1 296 -15 2327 72 62 0 chr6 48704433 48704725 -133710517 + AluSp SINE Alu 3 312 -1 2561 78 0 0 chr6 48704751 48705059 -133710183 + AluY SINE Alu 1 308 -3 265 323 60 18 chr6 48705222 48705389 -133709853 + L1MC/D LINE L1 3690 3863 -2283 1097 64 0 0 chr6 48705394 48705519 -133709723 + AluSx SINE Alu 1 125 -188 2321 111 0 0 chr6 48705623 48705920 -133709322 + AluSx SINE Alu 1 297 -15 969 184 0 49 chr6 48705920 48706105 -133709137 + AluSx SINE Alu 132 307 -3 327 188 72 7 chr6 48706317 48706434 -133708808 + FLAM_A SINE Alu 10 63 -69 397 367 28 14 chr6 48706459 48706674 -133708568 + L1MC/D LINE L1 4207 4424 -1722 198 0 0 0 chr6 48706937 48706959 -133708283 + (TG)n Simple_repeat Simple_repeat 2 23 0 394 246 68 8 chr6 48707463 48707581 -133707661 + L2 LINE L2 3179 3303 -10 420 321 131 44 chr6 48707802 48707882 -133707360 + L1MC/D LINE L1 5356 5428 -693 1752 153 0 64 chr6 48707882 48708208 -133707034 - AluSx SINE Alu -7 305 1 420 321 131 44 chr6 48708208 48708289 -133706953 + L1MC/D LINE L1 5428 5501 -620 2421 86 3 0 chr6 48708289 48708591 -133706651 - AluY SINE Alu -8 303 1 420 321 131 44 chr6 48708591 48708771 -133706471 + L1MC/D LINE L1 5500 5728 -393 271 358 0 0 chr6 48708777 48708942 -133706300 + L1MC/D LINE L1 5722 5886 -1922 1884 217 28 17 chr6 48708971 48709431 -133705811 + MLT1C LTR MaLR 1 465 -2 1644 159 70 40 chr6 48709778 48710079 -133705163 - AluJb SINE Alu -2 310 1 1609 110 148 4 chr6 48710132 48710396 -133704846 - AluSx SINE Alu 0 302 1 2281 98 0 3 chr6 48710407 48710702 -133704540 - AluSx SINE Alu -16 296 3 639 278 94 25 chr6 48710788 48711033 -133704209 + MIR SINE MIR 1 262 0 408 299 76 7 chr6 48711034 48711178 -133704064 + L2 LINE L2 3119 3272 0 236 310 116 31 chr6 48711299 48711428 -133703814 - L2 LINE L2 -17 3255 3116 2421 83 7 0 chr6 48711575 48711875 -133703367 - AluSq SINE Alu -11 302 1 2197 123 0 7 chr6 48711879 48712180 -133703062 - AluJb SINE Alu -11 301 3 1288 170 102 142 chr6 48712203 48712686 -133702556 - L1MC5 LINE L1 -618 7343 6889 701 201 0 15 chr6 48712686 48712820 -133702422 - FLAM_A SINE Alu -1 132 1 1288 170 102 142 chr6 48712820 48712964 -133702278 - L1MC5 LINE L1 -1072 6889 6741 350 263 92 57 chr6 48712996 48713177 -133702065 - L1MC5 LINE L1 -2222 5586 5413 2525 80 0 0 chr6 48713177 48713478 -133701764 - AluY SINE Alu -10 301 1 2045 134 20 3 chr6 48713478 48713770 -133701472 - AluSg SINE Alu -13 297 1 350 263 92 57 chr6 48713770 48713868 -133701374 - L1MC5 LINE L1 -2394 5414 5296 2138 113 17 7 chr6 48713888 48714190 -133701052 - AluSq SINE Alu -8 305 1 711 273 17 64 chr6 48715041 48715144 -133700098 - MIR SINE MIR -21 241 135 1930 132 3 60 chr6 48715144 48715462 -133699780 - AluJo SINE Alu -12 300 1 711 273 17 64 chr6 48715462 48715611 -133699631 - MIR SINE MIR -127 135 4 966 98 0 0 chr6 48715723 48715890 -133699352 - AluSx SINE Alu 0 324 158 243 242 0 0 chr6 48715963 48716025 -133699217 + CT-rich Low_complexity Low_complexity 1 62 0 1325 67 0 0 chr6 48716044 48716194 -133699048 - AluSx SINE Alu -162 150 1 191 321 18 0 chr6 48716195 48716251 -133698991 - MIR SINE MIR -65 143 87 1433 199 35 0 chr6 48716312 48716568 -133698674 - AluJo SINE Alu -15 297 33 2140 130 0 3 chr6 48716631 48716924 -133698318 + AluSx SINE Alu 2 293 -19 238 219 0 27 chr6 48717694 48717767 -133697475 + (TCTCTG)n Simple_repeat Simple_repeat 1 71 0 261 221 15 7 chr6 48717821 48717957 -133697285 + CT-rich Low_complexity Low_complexity 2 138 0 2077 93 0 22 chr6 48718274 48718552 -133696690 + AluSq SINE Alu 37 308 -5 29 60 0 0 chr6 48718753 48718803 -133696439 + AT_rich Low_complexity Low_complexity 1 50 0 2055 122 31 3 chr6 48719134 48719428 -133695814 + AluSx SINE Alu 1 302 -10 432 0 0 0 chr6 48720085 48720133 -133695109 + (TG)n Simple_repeat Simple_repeat 1 48 0 2135 117 0 29 chr6 48720288 48720604 -133694638 - AluSx SINE Alu -1 311 5 212 309 219 8 chr6 48720955 48721078 -133694164 + MIR SINE MIR 2 150 -112 2068 91 21 70 chr6 48721116 48721445 -133693797 + AluSq SINE Alu 1 313 0 814 202 21 11 chr6 48721596 48721735 -133693507 + MER3 DNA MER1_type 20 166 -43 2306 82 4 0 chr6 48721735 48722037 -133693205 + AluSx SINE Alu 1 303 0 814 202 21 11 chr6 48722037 48722082 -133693160 + MER3 DNA MER1_type 166 209 0 257 158 18 35 chr6 48722040 48722097 -133693145 - MER3 DNA MER1_type -119 90 35 * 360 0 0 0 chr6 48722101 48722141 -133693101 + (TC)n Simple_repeat Simple_repeat 2 41 0 367 226 87 0 chr6 48722141 48722236 -133693006 + L1MC4 LINE L1 1995 6983 -1339 1941 131 47 0 chr6 48722259 48722533 -133692709 - AluJb SINE Alu -17 295 9 183 226 21 97 chr6 48722988 48723081 -133692161 + MIR SINE MIR 33 118 -90 241 254 0 0 chr6 48723592 48723647 -133691595 - MIR SINE MIR -65 143 89 226 211 137 32 chr6 48724228 48724323 -133690919 - MIR SINE MIR -66 142 38 497 125 161 9 chr6 48724531 48724643 -133690599 - FLAM_A SINE Alu -1 141 13 1857 174 0 10 chr6 48725338 48725637 -133689605 + AluJb SINE Alu 1 296 -16 2353 103 3 0 chr6 48726087 48726387 -133688855 - AluSx SINE Alu -11 301 1 881 86 0 0 chr6 48726630 48726735 -133688507 - AluSg SINE Alu -205 105 1 1876 148 32 0 chr6 48727883 48728161 -133687081 + AluJb SINE Alu 1 287 -25 2400 91 3 3 chr6 48728372 48728680 -133686562 + AluSp SINE Alu 2 309 -4 302 279 179 25 chr6 48729167 48729369 -133685873 - MIR SINE MIR 0 262 15 2210 117 0 13 chr6 48729518 48729817 -133685425 + AluSx SINE Alu 1 295 -17 316 319 53 0 chr6 48730104 48730217 -133685025 + MIR SINE MIR 20 138 -70 2637 44 0 0 chr6 48731128 48731424 -133683818 + AluY SINE Alu 1 296 -15 2233 111 29 13 chr6 48731983 48732290 -133682952 + AluSq SINE Alu 1 312 -1 255 236 69 97 chr6 48733480 48733624 -133681618 + MIR3 SINE MIR 9 148 -60 352 220 17 196 chr6 48734201 48734374 -133680868 + MER91B DNA MER1_type 47 188 -2 441 0 0 0 chr6 48734510 48734559 -133680683 + (CA)n Simple_repeat Simple_repeat 1 49 0 2465 97 5 30 chr6 48734860 48735233 -133680009 - THE1B LTR MaLR 0 364 1 395 262 66 26 chr6 48736410 48736592 -133678650 + MIR SINE MIR 20 206 -56 2333 104 0 0 chr6 48736773 48737071 -133678171 + AluSg SINE Alu 1 298 -12 2224 130 0 0 chr6 48737520 48737819 -133677423 - AluSx SINE Alu -13 299 1 1706 185 10 17 chr6 48737845 48737980 -133677262 + AluJo SINE Alu 1 135 -177 2505 87 0 0 chr6 48737980 48738280 -133676962 + AluSg SINE Alu 1 300 -10 1706 185 10 17 chr6 48738280 48738436 -133676806 + AluJo SINE Alu 135 290 -22 430 266 16 16 chr6 48738472 48738596 -133676646 + MER5A DNA MER1_type 61 184 -5 726 276 152 22 chr6 48738774 48739237 -133676005 - L2 LINE L2 0 3313 2773 273 163 0 0 chr6 48739243 48739286 -133675956 - MLT1H LTR MaLR -5 585 543 919 50 0 0 chr6 48739286 48739387 -133675855 + AluSq/x SINE Alu 34 134 -179 1508 86 0 5 chr6 48739387 48739573 -133675669 + AluSg SINE Alu 1 185 -125 263 32 0 0 chr6 48739573 48739604 -133675638 + AluSg SINE Alu 220 250 -52 1409 107 9 67 chr6 48739604 48739829 -133675413 + AluSg/x SINE Alu 83 294 -16 688 239 159 84 chr6 48739829 48740209 -133675033 - MLT1H LTR MaLR -35 514 89 1715 189 3 10 chr6 48740209 48740505 -133674737 + AluJb SINE Alu 10 303 -9 688 239 159 84 chr6 48740505 48740602 -133674640 - MLT1H LTR MaLR -460 89 1 1246 260 154 13 chr6 48740610 48741163 -133674079 - L2 LINE L2 -555 2759 2129 2331 109 0 6 chr6 48741276 48741589 -133673653 - AluSx SINE Alu -1 311 1 625 146 46 23 chr6 48741661 48741791 -133673451 - FLAM_C SINE Alu 0 133 1 1773 156 59 17 chr6 48741876 48742165 -133673077 + AluJo SINE Alu 1 301 -11 2139 149 0 0 chr6 48743312 48743614 -133671628 + AluSx SINE Alu 1 302 -10 2217 99 0 23 chr6 48743647 48743950 -133671292 + AluSc SINE Alu 1 296 -13 1235 129 0 0 chr6 48744086 48744249 -133670993 + AluJo SINE Alu 1 163 -149 43 0 0 0 chr6 48744291 48744334 -133670908 + AT_rich Low_complexity Low_complexity 1 43 0 721 269 54 67 chr6 48744344 48744730 -133670512 - L1ME4a LINE L1 -222 5899 5519 260 177 16 0 chr6 48748270 48748332 -133666910 + MER113 DNA MER1_type? 45 107 -414 204 306 0 0 chr6 48748489 48748538 -133666704 - MIR3 SINE MIR -51 157 109 957 128 0 0 chr6 48749526 48749659 -133665583 + FLAM_C SINE Alu 1 133 0 626 283 45 0 chr6 48750243 48750420 -133664822 - MIR SINE MIR -9 253 69 221 313 0 0 chr6 48751190 48751257 -133663985 - MIR3 SINE MIR -49 159 93 1577 138 8 8 chr6 48751490 48751736 -133663506 + AluJo SINE Alu 40 285 -27 293 349 0 60 chr6 48752237 48752259 -133662983 + MER5A DNA MER1_type 39 61 -128 2349 78 0 3 chr6 48752259 48752566 -133662676 + AluSg SINE Alu 1 306 -4 2039 133 0 0 chr6 48752570 48752870 -133662372 + AluSq SINE Alu 1 300 -13 293 349 0 60 chr6 48752870 48752991 -133662251 + MER5A DNA MER1_type 64 189 0 634 199 15 38 chr6 48753056 48753187 -133662055 + FLAM_A SINE Alu 5 132 -1 347 105 0 18 chr6 48753295 48753352 -133661890 - FLAM SINE Alu -2 131 76 2033 106 0 63 chr6 48754270 48754601 -133660641 - AluSg SINE Alu 0 310 1 2331 57 0 7 chr6 48754689 48754988 -133660254 - AluY SINE Alu -10 301 5 2282 60 3 25 chr6 48754999 48755317 -133659925 - AluY SINE Alu 0 311 1 2066 84 7 20 chr6 48755332 48755630 -133659612 - AluY SINE Alu -17 294 1 1893 113 22 0 chr6 48755731 48756006 -133659236 + AluSx SINE Alu 1 281 -31 558 214 0 32 chr6 48756100 48756206 -133659036 + MER3 DNA MER1_type 26 134 -28 557 14 14 0 chr6 48756206 48756276 -133658966 + (TTATG)n Simple_repeat Simple_repeat 5 75 0 2118 112 0 0 chr6 48756277 48756564 -133658678 - AluSx SINE Alu -23 289 3 558 214 0 32 chr6 48756564 48756581 -133658661 + MER3 DNA MER1_type 133 147 -62 2109 88 0 11 chr6 48756585 48756893 -133658349 - AluY SINE Alu 0 305 1 1711 164 0 4 chr6 48756897 48757171 -133658071 - AluJo SINE Alu -19 293 21 434 144 8 119 chr6 48757177 48757235 -133658007 + MER3 DNA MER1_type 105 145 -64 1572 151 46 14 chr6 48757235 48757365 -133657877 + AluJb SINE Alu 1 125 -187 1858 122 14 0 chr6 48757365 48757671 -133657571 + AluSx SINE Alu 1 310 0 1572 151 46 14 chr6 48757671 48757824 -133657418 + AluJb SINE Alu 125 294 -18 434 144 8 119 chr6 48757824 48757883 -133657359 + MER3 DNA MER1_type 145 209 0 347 127 0 0 chr6 48757840 48757895 -133657347 - MER3 DNA MER1_type -119 90 36 * 500 243 144 11 chr6 48757903 48758084 -133657158 + MER112 DNA MER1_type 12 216 -44 757 167 0 0 chr6 48758671 48758785 -133656457 - FLAM_A SINE Alu -11 131 18 2024 91 14 27 chr6 48758842 48759139 -133656103 + AluSg SINE Alu 1 293 -17 422 268 159 53 chr6 48759248 48759427 -133655815 + L1ME3A LINE L1 5564 5723 -447 2215 125 0 0 chr6 48759427 48759738 -133655504 + AluSx SINE Alu 1 311 -1 422 268 159 53 chr6 48759738 48759805 -133655437 + L1ME3A LINE L1 5723 5781 -389 1585 160 3 27 chr6 48759805 48760099 -133655143 + AluJo SINE Alu 6 292 -20 1957 119 10 7 chr6 48760099 48760402 -133654840 + AluSg SINE Alu 1 304 -6 422 268 159 53 chr6 48760402 48760530 -133654712 + L1ME3A LINE L1 5780 5980 -190 180 200 0 0 chr6 48760765 48760805 -133654437 + (CA)n Simple_repeat Simple_repeat 2 41 0 351 0 0 0 chr6 48760807 48760846 -133654396 + (TA)n Simple_repeat Simple_repeat 2 40 0 880 147 23 0 chr6 48760860 48760989 -133654253 - FLAM_C SINE Alu 0 133 2 698 203 0 16 chr6 48761082 48761210 -133654032 + AluJo SINE Alu 4 129 -183 1772 103 4 0 chr6 48761218 48761460 -133653782 - AluSp SINE Alu -24 289 47 22 0 0 0 chr6 48761465 48761487 -133653755 + AT_rich Low_complexity Low_complexity 1 22 0 2396 67 0 3 chr6 48761497 48761797 -133653445 + AluY SINE Alu 1 299 -12 987 154 0 19 chr6 48761800 48761962 -133653280 + AluJo SINE Alu 136 294 -18 477 278 48 0 chr6 48762045 48762171 -133653071 - MIR SINE MIR -14 248 117 2107 94 0 13 chr6 48763600 48763898 -133651344 - AluSg SINE Alu -16 294 1 241 80 20 20 chr6 48765109 48765159 -133650083 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 2235 97 7 3 chr6 48765277 48765586 -133649656 + AluSx SINE Alu 1 310 -2 1910 168 0 0 chr6 48766066 48766364 -133648878 + AluJo SINE Alu 1 298 -14 2066 123 3 3 chr6 48766370 48766670 -133648572 + AluSg SINE Alu 1 300 -10 1459 135 31 135 chr6 48766675 48766794 -133648448 + AluSc SINE Alu 4 134 -165 2336 81 10 0 chr6 48766794 48767101 -133648141 + AluY SINE Alu 1 310 -1 1459 135 31 135 chr6 48767101 48767308 -133647934 + AluSc SINE Alu 134 296 -3 783 158 144 7 chr6 48767311 48767457 -133647785 + FRAM SINE Alu 1 166 0 590 264 84 6 chr6 48767458 48767636 -133647606 - MIR SINE MIR 0 262 71 310 292 130 63 chr6 48767889 48768118 -133647124 - MLT1I LTR MaLR -21 388 176 930 141 26 32 chr6 48768118 48768274 -133646968 + FAM SINE Alu 5 159 -16 234 62 0 0 chr6 48768274 48768306 -133646936 + (CA)n Simple_repeat Simple_repeat 2 33 0 310 292 130 63 chr6 48768306 48768359 -133646883 - MLT1I LTR MaLR -232 177 86 300 226 0 0 chr6 48768461 48768523 -133646719 - MER112 DNA MER1_type -198 62 1 2278 69 10 0 chr6 48768642 48768932 -133646310 - AluY SINE Alu -14 297 5 2416 72 0 0 chr6 48769004 48769308 -133645934 - AluY SINE Alu -7 304 1 1870 161 23 0 chr6 48769377 48769681 -133645561 - AluJb SINE Alu -1 311 1 1886 129 0 11 chr6 48769696 48770012 -133645230 - AluSx SINE Alu 0 313 1 317 324 36 22 chr6 48770039 48770178 -133645064 - L1ME4a LINE L1 -13 6108 5968 1273 196 40 34 chr6 48770325 48770483 -133644759 - AluJb SINE Alu -14 298 136 1970 139 0 3 chr6 48770483 48770778 -133644464 - AluSx SINE Alu -15 297 4 1273 196 40 34 chr6 48770778 48770915 -133644327 - AluJb SINE Alu -176 136 1 497 270 70 60 chr6 48771152 48771322 -133643920 - MER102a DNA MER1_type -1113 304 130 2025 131 0 3 chr6 48771322 48771620 -133643622 - AluSx SINE Alu -15 297 1 497 270 70 60 chr6 48771620 48771664 -133643578 - MER102a DNA MER1_type -1287 130 88 899 104 0 37 chr6 48772257 48772391 -133642851 + FLAM_C SINE Alu 1 129 -14 334 234 13 0 chr6 48772462 48772539 -133642703 + MER112 DNA MER1_type 1 78 -182 330 183 28 0 chr6 48772539 48772610 -133642632 + MER116 DNA Mariner 7 79 -1 2162 98 0 16 chr6 48772945 48773252 -133641990 + AluSx SINE Alu 1 302 -10 288 73 0 0 chr6 48773467 48773494 -133641748 + (T)n Simple_repeat Simple_repeat 1 30 -11 1809 148 0 0 chr6 48773494 48773778 -133641464 + AluJb SINE Alu 2 285 -27 288 73 0 0 chr6 48773778 48773791 -133641451 + (T)n Simple_repeat Simple_repeat 29 41 0 21 0 0 0 chr6 48774876 48774897 -133640345 + GC_rich Low_complexity Low_complexity 1 21 0 252 326 0 0 chr6 48775002 48775091 -133640151 + (CGG)n Simple_repeat Simple_repeat 3 91 0 26 0 0 0 chr6 48775216 48775242 -133640000 + GC_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 48775657 48775687 -133639555 + GC_rich Low_complexity Low_complexity 1 30 0 499 298 6 39 chr6 48778625 48778803 -133636439 - MIR3 SINE MIR -2 206 35 787 257 50 17 chr6 48778881 48779122 -133636120 - MIR SINE MIR 0 262 14 322 253 66 0 chr6 48780347 48780438 -133634804 - MIR3 SINE MIR -27 181 85 657 218 122 0 chr6 48780607 48780709 -133634533 + MER5A DNA MER1_type 9 138 -51 2445 40 0 10 chr6 48780709 48781010 -133634232 - AluY SINE Alu -13 298 1 657 218 122 0 chr6 48781010 48781063 -133634179 + MER5A DNA MER1_type 138 183 -6 2364 77 0 0 chr6 48781114 48781412 -133633830 + AluY SINE Alu 1 298 -13 240 35 0 0 chr6 48782015 48782044 -133633198 + (CA)n Simple_repeat Simple_repeat 2 30 0 32 26 0 0 chr6 48783411 48783450 -133631792 + AT_rich Low_complexity Low_complexity 1 39 0 201 210 0 0 chr6 48784796 48784858 -133630384 + (TG)n Simple_repeat Simple_repeat 2 63 0 555 313 83 15 chr6 48786429 48786640 -133628602 - MIR SINE MIR 0 262 40 402 21 0 0 chr6 48787173 48787220 -133628022 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 2190 117 7 0 chr6 48787223 48787531 -133627711 - AluSg SINE Alu 0 310 1 695 233 101 0 chr6 48788622 48788850 -133626392 - MER112 DNA MER1_type -4 256 6 470 321 11 27 chr6 48789141 48789325 -133625917 + MER5A DNA MER1_type 7 187 -2 760 278 43 13 chr6 48792348 48792582 -133622660 - MIR SINE MIR -2 260 20 2141 99 20 0 chr6 48792662 48792964 -133622278 - AluSc SINE Alu -1 308 1 2031 123 33 0 chr6 48793012 48793314 -133621928 - AluSx SINE Alu 0 312 1 538 271 163 37 chr6 48793619 48793941 -133621301 - L1ME LINE L1 -586 5535 5174 398 279 48 107 chr6 48793930 48794202 -133621040 - L1ME4a LINE L1 0 6121 5866 * 306 285 57 39 chr6 48794439 48794720 -133620522 - L1ME LINE L1 -939 5207 4922 384 22 0 0 chr6 48794733 48794778 -133620464 + (TG)n Simple_repeat Simple_repeat 2 46 0 1296 162 0 70 chr6 48794781 48795052 -133620190 - AluJo SINE Alu 0 312 61 2135 109 0 0 chr6 48795079 48795363 -133619879 - AluSx SINE Alu -26 286 3 335 301 138 52 chr6 48795426 48795533 -133619709 - L1ME LINE L1 -1327 4819 4723 1644 166 51 3 chr6 48795533 48795828 -133619414 - AluJb SINE Alu -3 309 1 335 301 138 52 chr6 48795828 48795899 -133619343 - L1ME LINE L1 -1423 4723 4659 1621 151 4 18 chr6 48795899 48796177 -133619065 + AluSx SINE Alu 31 304 -8 335 301 138 52 chr6 48796177 48796266 -133618976 - L1ME LINE L1 -1487 4659 4528 899 148 0 0 chr6 48796886 48797014 -133618228 - FLAM_C SINE Alu -5 128 1 225 0 0 0 chr6 48797023 48797048 -133618194 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 853 118 67 0 chr6 48797048 48797183 -133618059 - AluSg/x SINE Alu -32 280 137 300 301 15 22 chr6 48797191 48797327 -133617915 - L2 LINE L2 -844 2470 2336 201 111 28 0 chr6 48797751 48797787 -133617455 + T-rich Low_complexity Low_complexity 5 180 0 2322 106 0 6 chr6 48797787 48798099 -133617143 - AluSg SINE Alu 0 310 1 2318 94 3 0 chr6 48798254 48798542 -133616700 + AluSx SINE Alu 1 289 -23 274 273 250 14 chr6 48798930 48799146 -133616096 - L2 LINE L2 -1065 2249 1983 180 111 0 0 chr6 48799358 48799385 -133615857 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 248 299 115 25 chr6 48800437 48800531 -133614711 + L3b LINE CR1 1325 1409 -174 2282 105 3 0 chr6 48800531 48800826 -133614416 - AluSq SINE Alu -17 296 1 248 299 115 25 chr6 48800826 48800888 -133614354 + L3b LINE CR1 1409 1495 -88 2287 100 0 31 chr6 48800942 48801262 -133613980 - AluSg SINE Alu 0 310 1 1986 138 0 0 chr6 48801439 48801708 -133613534 + AluSx SINE Alu 1 269 -43 2486 93 3 0 chr6 48802404 48802716 -133612526 - AluSp SINE Alu 0 313 1 265 301 169 53 chr6 48804575 48804894 -133610348 - L2 LINE L2 0 3272 2917 2581 68 0 0 chr6 48804952 48805259 -133609983 - AluY SINE Alu -4 307 1 672 342 121 13 chr6 48805277 48805914 -133609328 - L2 LINE L2 -461 2853 2148 726 177 24 0 chr6 48806035 48806159 -133609083 - FLAM_C SINE Alu -4 129 3 2179 94 34 27 chr6 48809029 48809327 -133605915 + AluSq SINE Alu 1 300 -13 219 277 0 15 chr6 48809673 48809738 -133605504 + GA-rich Low_complexity Low_complexity 1 64 0 308 274 86 27 chr6 48810133 48810319 -133604923 - L1MEc LINE L1 -2989 3226 3030 1919 118 4 0 chr6 48810323 48810578 -133604664 - AluSx SINE Alu -10 302 47 1589 215 39 39 chr6 48810604 48811042 -133604200 - L1ME3 LINE L1 0 6162 5725 609 279 84 31 chr6 48811028 48811536 -133603706 - L1MEc LINE L1 -3171 3044 2491 * 827 204 60 20 chr6 48811536 48811675 -133603567 + MER3 DNA MER1_type 1 152 -57 2251 119 0 13 chr6 48811675 48811986 -133603256 - AluSx SINE Alu -5 307 1 827 204 60 20 chr6 48811986 48812047 -133603195 + MER3 DNA MER1_type 152 209 0 609 279 84 31 chr6 48812047 48812207 -133603035 - L1MEc LINE L1 -3724 2491 2341 288 169 15 0 chr6 48812249 48812314 -133602928 - L1MB3 LINE L1 0 6183 6118 1650 156 92 14 chr6 48812315 48812597 -133602645 - AluSg SINE Alu -6 304 1 2474 89 0 13 chr6 48812616 48812929 -133602313 - AluY SINE Alu -2 309 1 1086 244 22 84 chr6 48812929 48813118 -133602124 - L1MC4 LINE L1 -313 7729 7530 2228 131 0 7 chr6 48813118 48813424 -133601818 - AluSg SINE Alu -4 306 3 1086 244 22 84 chr6 48813424 48813447 -133601795 - L1MC4 LINE L1 -512 7530 7507 2311 104 3 3 chr6 48813447 48813756 -133601486 - AluSg SINE Alu -1 309 1 1086 244 22 84 chr6 48813756 48814043 -133601199 - L1MC4 LINE L1 -535 7507 7260 399 323 117 32 chr6 48814070 48814646 -133600596 - L1MEc LINE L1 -3862 2415 1874 2337 103 0 0 chr6 48814756 48815057 -133600185 + AluSx SINE Alu 1 301 -11 310 178 297 30 chr6 48815154 48815255 -133599987 - L1MC5 LINE L1 -51 7910 7783 1667 209 55 139 chr6 48815259 48816276 -133598966 - L1MC5 LINE L1 -244 7717 6786 523 197 40 121 chr6 48817557 48817618 -133597624 - MIR SINE MIR -19 243 179 2097 137 10 0 chr6 48817618 48817910 -133597332 + AluSx SINE Alu 1 295 -17 523 197 40 121 chr6 48817910 48817999 -133597243 - MIR SINE MIR -83 179 110 2174 124 17 0 chr6 48817999 48818297 -133596945 + AluSx SINE Alu 1 303 -9 523 197 40 121 chr6 48818297 48818343 -133596899 - MIR SINE MIR -152 110 62 682 161 0 0 chr6 48818354 48818466 -133596776 + FRAM SINE Alu 44 155 -21 189 167 48 0 chr6 48818476 48818518 -133596724 - MIR SINE MIR -184 78 35 188 217 17 67 chr6 48819238 48819298 -133595944 - MER5A DNA MER1_type -120 69 13 191 312 21 32 chr6 48820053 48820146 -133595096 + MIR SINE MIR 48 139 -69 529 254 41 6 chr6 48820204 48820373 -133594869 + MER5B DNA MER1_type 1 175 -3 1821 150 0 4 chr6 48820571 48820838 -133594404 + AluJb SINE Alu 18 283 -29 633 209 70 13 chr6 48821344 48821502 -133593740 - MIR SINE MIR -10 252 86 436 162 0 0 chr6 48821521 48821589 -133593653 - AluJ/FLAM SINE Alu -243 69 2 778 252 174 71 chr6 48821596 48821685 -133593557 - L2 LINE L2 -536 2778 2700 2506 84 0 0 chr6 48821685 48821996 -133593246 - AluY SINE Alu 0 311 1 778 252 174 71 chr6 48821996 48822383 -133592859 - L2 LINE L2 -614 2700 2253 1254 201 0 18 chr6 48822452 48822671 -133592571 + AluJo SINE Alu 70 284 -28 189 0 0 0 chr6 48822671 48822692 -133592550 + (GA)n Simple_repeat Simple_repeat 2 22 0 409 281 152 6 chr6 48825520 48825691 -133589551 + MIR SINE MIR 2 197 -65 220 333 0 0 chr6 48826633 48826696 -133588546 + L2 LINE L2 3251 3313 0 196 222 191 56 chr6 48826981 48827107 -133588135 + MIR3 SINE MIR 16 158 -50 2298 105 3 0 chr6 48828336 48828631 -133586611 - AluSq SINE Alu -17 296 1 2571 60 0 0 chr6 48828645 48828947 -133586295 - AluY SINE Alu -9 302 1 190 200 0 0 chr6 48830267 48830302 -133584940 + MER5A DNA MER1_type 40 74 -115 2435 100 0 0 chr6 48830305 48830604 -133584638 + AluSx SINE Alu 1 299 -13 2245 108 0 0 chr6 48830615 48830910 -133584332 + AluSg SINE Alu 1 295 -15 188 200 0 50 chr6 48830942 48830982 -133584260 - MER5A DNA MER1_type -114 75 38 562 201 110 7 chr6 48831008 48831162 -133584080 + MER69A DNA AcHobo 8 177 0 1808 189 6 10 chr6 48831288 48831601 -133583641 + AluSx SINE Alu 1 312 0 1554 144 42 25 chr6 48831660 48831944 -133583298 + AluJo SINE Alu 7 295 -17 2300 80 0 0 chr6 48832032 48832331 -133582911 + AluSx SINE Alu 9 307 0 1785 257 92 14 chr6 48833101 48833414 -133581828 + L2 LINE L2 2297 2584 -729 3373 166 57 29 chr6 48833414 48834057 -133581185 - LTR62 LTR ERVK -2 717 49 1414 164 34 74 chr6 48834057 48834257 -133580985 - AluJo SINE Alu 0 311 126 2361 82 0 7 chr6 48834257 48834551 -133580691 + AluSc SINE Alu 1 292 -17 1414 164 34 74 chr6 48834551 48834671 -133580571 - AluJo SINE Alu -185 126 3 3373 166 57 29 chr6 48834671 48834722 -133580520 - LTR62 LTR ERVK -670 49 1 1785 257 92 14 chr6 48834722 48835220 -133580022 + L2 LINE L2 2584 3179 -134 671 96 60 24 chr6 48835254 48835421 -133579821 + CT-rich Low_complexity Low_complexity 1 173 0 1971 157 26 7 chr6 48835423 48835802 -133579440 - AluJo SINE Alu 0 385 1 341 243 0 0 chr6 48835802 48835872 -133579370 + L2 LINE L2 3244 3313 0 183 100 0 0 chr6 48836474 48836504 -133578738 + (CA)n Simple_repeat Simple_repeat 2 31 0 1947 113 4 4 chr6 48836523 48836797 -133578445 - AluSp SINE Alu -5 308 35 1565 109 5 0 chr6 48837186 48837397 -133577845 - AluSg/x SINE Alu 0 310 99 322 140 0 20 chr6 48837397 48837438 -133577804 - AluSp SINE Alu -261 42 1 303 216 91 0 chr6 48837448 48837536 -133577706 + MIR SINE MIR 57 152 -110 666 123 200 13 chr6 48837597 48837752 -133577490 + AluSq SINE Alu 126 309 -4 2539 39 0 0 chr6 48837752 48838061 -133577181 + AluY SINE Alu 1 309 0 180 0 0 0 chr6 48838061 48838081 -133577161 + (CA)n Simple_repeat Simple_repeat 1 20 0 2133 101 9 0 chr6 48838085 48838401 -133576841 + L1MC1 LINE L1 6015 6333 0 575 197 96 106 chr6 48838456 48838654 -133576588 + L1ME1 LINE L1 5847 6045 -121 1119 120 34 46 chr6 48838656 48838831 -133576411 - AluJb SINE Alu -13 299 127 528 159 35 9 chr6 48838844 48838957 -133576285 - L1MB1 LINE L1 -208 5960 5845 983 152 7 7 chr6 48838989 48839140 -133576102 + AluJo SINE Alu 1 151 -161 342 0 0 0 chr6 48839145 48839183 -133576059 + (TG)n Simple_repeat Simple_repeat 2 39 0 334 111 0 0 chr6 48839183 48839237 -133576005 + L1MB1 LINE L1 5791 5844 -345 1538 204 131 47 chr6 48839258 48839449 -133575793 - L1MC5 LINE L1 -58 7903 7730 771 154 0 15 chr6 48839449 48839579 -133575663 + FLAM_C SINE Alu 1 128 -5 1538 204 131 47 chr6 48839579 48840049 -133575193 - L1MC5 LINE L1 -231 7730 7186 2720 39 0 3 chr6 48840308 48840615 -133574627 - AluY SINE Alu -5 306 1 1802 144 13 61 chr6 48840707 48841019 -133574223 - AluJb SINE Alu -15 297 1 3564 228 67 89 chr6 48841315 48842024 -133573218 + L1MEc LINE L1 40 763 -5633 1727 178 0 30 chr6 48842024 48842327 -133572915 - AluJo SINE Alu -18 294 1 3564 228 67 89 chr6 48842327 48842971 -133572271 + L1MEc LINE L1 763 1419 -4977 3527 195 32 96 chr6 48842971 48844006 -133571236 - LTR5 LTR ERVK 0 969 1 3564 228 67 89 chr6 48844006 48844101 -133571141 + L1MEc LINE L1 1419 1456 -4940 2069 132 0 11 chr6 48844101 48844417 -133570825 + AluSx SINE Alu 1 313 0 3564 228 67 89 chr6 48844417 48844544 -133570698 + L1MEc LINE L1 1456 1584 -4812 206 298 36 24 chr6 48844544 48844628 -133570614 + L2 LINE L2 2675 2759 -555 1365 308 47 2 chr6 48844628 48845056 -133570186 - LTR16A LTR ERVL -3 447 1 242 220 39 148 chr6 48845129 48845311 -133569931 + L2 LINE L2 2921 3082 -190 994 204 56 14 chr6 48845317 48845533 -133569709 + MIR SINE MIR 12 236 -26 1906 171 0 0 chr6 48845546 48845854 -133569388 - AluJb SINE Alu 0 308 1 1959 169 0 3 chr6 48845924 48846231 -133569011 + AluJb SINE Alu 1 306 -6 232 207 24 12 chr6 48847094 48847176 -133568066 + (CCG)n Simple_repeat Simple_repeat 3 85 0 218 79 0 26 chr6 48847188 48847226 -133568016 + (CGGGG)n Simple_repeat Simple_repeat 1 37 0 281 241 11 11 chr6 48848924 48849011 -133566231 + (CA)n Simple_repeat Simple_repeat 2 88 0 225 219 0 0 chr6 48849031 48849104 -133566138 + (CA)n Simple_repeat Simple_repeat 2 74 0 238 364 49 42 chr6 48849109 48849252 -133565990 - L3b LINE CR1 -154 1429 1286 202 217 0 22 chr6 48851123 48851169 -133564073 + (CGTG)n Simple_repeat Simple_repeat 4 48 0 2050 141 0 0 chr6 48851921 48852219 -133563023 + AluSx SINE Alu 1 298 -14 502 146 124 0 chr6 48852226 48852315 -133562927 + FLAM_A SINE Alu 35 134 -8 412 278 80 37 chr6 48852371 48852558 -133562684 - MIR SINE MIR 0 262 68 1450 117 0 0 chr6 48852567 48852772 -133562470 + AluSq SINE Alu 101 305 -8 383 302 47 0 chr6 48852823 48852972 -133562270 - MER46C DNA MER2_type -178 160 5 367 343 29 0 chr6 48852976 48853113 -133562129 - L1ME LINE L1 -403 5718 5578 487 156 22 36 chr6 48853210 48853248 -133561994 + L1MA4A LINE L1 6001 6038 -265 2025 145 0 0 chr6 48853248 48853559 -133561683 + AluSx SINE Alu 1 311 -1 487 156 22 36 chr6 48853559 48853742 -133561500 + L1MA4A LINE L1 6038 6280 -23 210 288 136 17 chr6 48853816 48853934 -133561308 + MIR3 SINE MIR 5 136 -72 480 200 113 31 chr6 48854456 48854616 -133560626 - MIR3 SINE MIR -2 206 34 1059 117 75 67 chr6 48854763 48854908 -133560334 + ORSL DNA AcHobo 34 183 -92 2210 121 0 0 chr6 48854908 48855214 -133560028 - AluSx SINE Alu -6 306 1 1059 117 75 67 chr6 48855214 48855307 -133559935 + ORSL DNA AcHobo 183 274 -1 429 250 19 123 chr6 48855627 48855681 -133559561 + MIR SINE MIR 19 77 -185 2297 96 0 6 chr6 48855681 48855994 -133559248 - AluSq SINE Alu 0 313 3 429 250 19 123 chr6 48855994 48856151 -133559091 + MIR SINE MIR 77 208 -54 393 22 0 0 chr6 48857520 48857566 -133557676 + (TG)n Simple_repeat Simple_repeat 1 46 0 2107 106 17 3 chr6 48857681 48857974 -133557268 + AluSx SINE Alu 1 297 -15 247 294 0 0 chr6 48859456 48859524 -133555718 - MIR SINE MIR -115 147 80 372 309 66 7 chr6 48859612 48859748 -133555494 + MIR SINE MIR 63 206 -56 300 229 102 85 chr6 48861356 48861474 -133553768 - MIR SINE MIR 0 262 143 1973 118 4 0 chr6 48861477 48861757 -133553485 - AluSg SINE Alu -16 294 14 2092 136 0 0 chr6 48861860 48862161 -133553081 + AluSx SINE Alu 6 306 -6 279 238 221 25 chr6 48862185 48862325 -133552917 - MIR SINE MIR -63 145 20 323 102 0 0 chr6 48864005 48864054 -133551188 + LTR23 LTR ERV1 316 364 -73 237 108 0 0 chr6 48866325 48866362 -133548880 + (CA)n Simple_repeat Simple_repeat 2 38 0 2130 119 20 0 chr6 48866931 48867233 -133548009 + AluSx SINE Alu 1 308 -4 208 197 49 16 chr6 48867288 48867349 -133547893 - L2 LINE L2 -87 3185 3123 246 62 0 0 chr6 48867957 48867989 -133547253 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 249 292 22 66 chr6 48868914 48869051 -133546191 - L2 LINE L2 -220 3052 2922 327 335 208 30 chr6 48869082 48869504 -133545738 - L2 LINE L2 -465 2849 2504 2070 101 0 4 chr6 48869504 48869809 -133545433 + AluSx SINE Alu 7 310 0 327 335 208 30 chr6 48869809 48870119 -133545123 - L2 LINE L2 -810 2504 1985 245 341 147 8 chr6 48871033 48871162 -133544080 - L2 LINE L2 -1 3271 3125 * 330 304 20 0 chr6 48871157 48871259 -133543983 + MIR SINE MIR 19 122 -86 594 254 70 25 chr6 48871793 48871994 -133543248 - MIR SINE MIR -40 222 13 2303 70 13 10 chr6 48872012 48872314 -133542928 - AluSp SINE Alu -10 303 1 492 18 0 0 chr6 48872394 48872451 -133542791 + (TG)n Simple_repeat Simple_repeat 2 58 0 348 259 81 97 chr6 48873256 48873515 -133541727 - L2 LINE L2 -31 3241 2987 1018 238 9 0 chr6 48874298 48874508 -133540734 - MIR SINE MIR -21 241 30 396 0 0 0 chr6 48875813 48875857 -133539385 + (TG)n Simple_repeat Simple_repeat 2 45 0 413 289 39 0 chr6 48876715 48876819 -133538423 - MER91C DNA MER1_type -1 139 32 297 0 0 0 chr6 48877160 48877193 -133538049 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 506 211 18 0 chr6 48878428 48878537 -133536705 - MIR SINE MIR -21 241 131 324 248 70 8 chr6 48879134 48879263 -133535979 - Charlie8 DNA MER1_type -2280 137 1 272 212 30 53 chr6 48880643 48880775 -133534467 + (CCCCG)n Simple_repeat Simple_repeat 4 132 0 21 0 0 0 chr6 48880832 48880853 -133534389 + GC_rich Low_complexity Low_complexity 1 21 0 201 121 0 0 chr6 48881661 48881694 -133533548 + (CA)n Simple_repeat Simple_repeat 1 33 0 21 57 0 0 chr6 48881914 48881949 -133533293 + GC_rich Low_complexity Low_complexity 1 35 0 403 260 84 26 chr6 48883831 48883985 -133531257 + MER5B DNA MER1_type 14 176 -2 295 182 73 0 chr6 48885020 48885075 -133530167 + L2 LINE L2 3214 3272 0 1122 118 140 0 chr6 48885157 48885361 -133529881 - AluJb SINE Alu 0 314 86 198 349 34 74 chr6 48886277 48886490 -133528752 - L2 LINE L2 -339 2975 2780 2310 82 0 7 chr6 48886490 48886794 -133528448 + AluSx SINE Alu 1 302 -10 198 349 34 74 chr6 48886794 48886930 -133528312 - L2 LINE L2 -534 2780 2640 267 280 19 37 chr6 48887665 48887772 -133527470 + MIR3 SINE MIR 95 199 -9 557 241 0 45 chr6 48887892 48888025 -133527217 - L2 LINE L2 -3 3310 3184 741 125 0 0 chr6 48888333 48888453 -133526789 + (GGA)n Simple_repeat Simple_repeat 3 122 0 36 40 0 0 chr6 48890603 48890653 -133524589 + GC_rich Low_complexity Low_complexity 1 50 0 511 368 21 0 chr6 48891647 48891840 -133523402 - L3b LINE CR1 -140 1443 1247 210 288 136 17 chr6 48893780 48893898 -133521344 - MIR3 SINE MIR -72 136 5 487 156 22 36 chr6 48893972 48894155 -133521087 - L1MA4A LINE L1 -23 6280 6038 2025 145 0 0 chr6 48894155 48894466 -133520776 - AluSx SINE Alu -1 311 1 487 156 22 36 chr6 48894466 48894504 -133520738 - L1MA4A LINE L1 -265 6038 6001 367 343 29 0 chr6 48894601 48894738 -133520504 + L1ME LINE L1 5578 5718 -403 585 271 75 31 chr6 48894742 48894942 -133520300 + MER46C DNA MER2_type 5 220 -118 2284 102 0 0 chr6 48894942 48895247 -133519995 - AluSq SINE Alu -8 305 1 585 271 75 31 chr6 48895247 48895301 -133519941 + MER46C DNA MER2_type 220 270 -68 225 0 0 0 chr6 48895303 48895328 -133519914 + (TG)n Simple_repeat Simple_repeat 2 26 0 377 275 0 23 chr6 48895335 48895438 -133519804 - L1MCa LINE L1 -1339 6983 1995 * 384 284 23 0 chr6 48895359 48895447 -133519795 + L1MC4 LINE L1 6614 6703 -1339 2433 108 53 16 chr6 48895447 48895882 -133519360 - Tigger2 DNA MER2_type -1 2717 2267 381 164 0 0 chr6 48895866 48895933 -133519309 - Tigger2 DNA MER2_type -2649 69 3 * 628 198 25 8 chr6 48896113 48896234 -133519008 + FLAM_A SINE Alu 1 123 -10 22 35 0 0 chr6 48896899 48896928 -133518314 + AT_rich Low_complexity Low_complexity 1 29 0 675 104 0 96 chr6 48896962 48897077 -133518165 - AluJb SINE Alu -19 293 190 1803 153 33 12 chr6 48897079 48897478 -133517764 - L1MB7 LINE L1 -256 5928 5522 300 230 30 10 chr6 48897486 48897586 -133517656 - L1ME LINE L1 -302 5819 5718 1149 141 0 0 chr6 48897932 48898095 -133517147 + FRAM SINE Alu 1 163 -13 300 313 58 54 chr6 48898147 48898387 -133516855 - L2 LINE L2 -184 3088 2848 239 313 61 17 chr6 48899153 48899268 -133515974 - L2 LINE L2 -1 3312 3193 690 173 28 13 chr6 48899281 48899744 -133515498 + (CACCAT)n Simple_repeat Simple_repeat 1 470 0 215 345 28 7 chr6 48899768 48899910 -133515332 + (CCA)n Simple_repeat Simple_repeat 2 146 0 1307 109 5 30 chr6 48900174 48900376 -133514866 - AluSg/x SINE Alu 0 312 116 688 207 0 0 chr6 48900476 48900597 -133514645 + MLT1A1 LTR MaLR 245 365 0 504 100 0 25 chr6 48900598 48900678 -133514564 + L1M4c LINE L1 2407 2484 -3900 910 214 14 104 chr6 48900728 48900874 -133514368 + L1M4c LINE L1 2470 2627 -3755 1476 176 3 31 chr6 48900874 48901164 -133514078 + AluJo SINE Alu 1 282 -30 208 0 62 0 chr6 48901169 48901201 -133514041 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 910 214 14 104 chr6 48901201 48901357 -133513885 + L1M4c LINE L1 2631 2746 -3636 1243 206 74 31 chr6 48901357 48901682 -133513560 + MER2 DNA MER2_type 3 341 -3 910 214 14 104 chr6 48901682 48901718 -133513524 + L1M4c LINE L1 2746 2784 -3598 2908 142 68 60 chr6 48901827 48902325 -133512917 - L1MB5 LINE L1 -258 5916 5424 1620 179 7 3 chr6 48902325 48902621 -133512621 - AluJo SINE Alu -14 298 2 2908 142 68 60 chr6 48902621 48902652 -133512590 - L1MB5 LINE L1 -750 5424 5395 1975 135 0 0 chr6 48902652 48902948 -133512294 - AluSx SINE Alu -16 296 1 2908 142 68 60 chr6 48902948 48903090 -133512152 - L1MB5 LINE L1 -779 5395 5236 4106 199 71 22 chr6 48903194 48903888 -133511354 - L1MB5 LINE L1 -1199 4947 4187 1321 201 88 0 chr6 48903888 48904188 -133511054 - AluJo SINE Alu 0 312 5 4106 199 71 22 chr6 48904188 48904497 -133510745 - L1MB5 LINE L1 -1959 4187 3895 678 282 19 25 chr6 48904613 48904753 -133510489 - L1MB5 LINE L1 -2966 3180 3041 2155 125 0 3 chr6 48904753 48905065 -133510177 - AluSx SINE Alu -1 311 1 678 282 19 25 chr6 48905065 48905243 -133509999 - L1MB5 LINE L1 -3105 3041 2864 1514 163 7 21 chr6 48905280 48905562 -133509680 + AluJo SINE Alu 24 301 -11 288 248 40 10 chr6 48905562 48905663 -133509579 - L1MB5 LINE L1 -3272 2874 2771 647 307 123 18 chr6 48906011 48906337 -133508905 - MLT1K LTR MaLR -128 460 101 262 192 192 0 chr6 48907550 48907623 -133507619 - MARNA DNA Mariner -21 565 479 2096 112 0 3 chr6 48907664 48907959 -133507283 + AluSg SINE Alu 1 294 -16 1376 177 78 11 chr6 48908355 48908637 -133506605 + AluJo SINE Alu 1 301 -11 485 252 44 37 chr6 48908790 48908925 -133506317 - L2 LINE L2 0 3272 3137 1942 121 14 4 chr6 48909019 48909323 -133505919 + AluSx SINE Alu 1 307 0 244 281 100 56 chr6 48909480 48909640 -133505602 - L2 LINE L2 -265 3007 2841 2217 92 0 7 chr6 48909901 48910206 -133505036 - AluSx SINE Alu -9 303 1 421 284 196 71 chr6 48910341 48910637 -133504605 - L3 LINE CR1 -4 1573 1241 304 289 48 0 chr6 48910700 48910783 -133504459 + L1M4 LINE L1 2405 2491 -3655 433 133 111 0 chr6 48911758 48911848 -133503394 + L1M1 LINE L1 5356 5455 -847 2070 106 3 10 chr6 48911961 48912273 -133502969 - AluSx SINE Alu -2 310 1 929 196 136 14 chr6 48912383 48912597 -133502645 - MIR SINE MIR -21 241 2 2079 87 0 0 chr6 48914415 48914681 -133500561 + AluSg SINE Alu 39 304 -6 368 232 80 17 chr6 48914692 48914824 -133500418 - MIR SINE MIR -60 148 30 505 232 27 78 chr6 48916604 48916829 -133498413 - MIR SINE MIR -50 212 3 2036 122 26 0 chr6 48918332 48918635 -133496607 - AluSq SINE Alu -2 311 1 826 116 0 77 chr6 48918795 48918950 -133496292 + FLAM_C SINE Alu 1 143 0 294 297 79 2 chr6 48919809 48919965 -133495277 - MIR SINE MIR -65 143 23 296 274 50 84 chr6 48920731 48920876 -133494366 + L2 LINE L2 2895 3034 -238 1742 156 19 23 chr6 48920876 48921184 -133494058 + AluJb SINE Alu 1 307 -5 296 274 50 84 chr6 48921184 48921217 -133494025 + L2 LINE L2 3034 3067 -205 448 299 6 0 chr6 48921507 48921671 -133493571 + CT-rich Low_complexity Low_complexity 1 165 0 218 268 9 80 chr6 48922885 48922997 -133492245 - MIR SINE MIR -61 147 81 356 273 80 26 chr6 48924411 48924575 -133490667 - MIR3 SINE MIR -49 159 32 205 182 0 0 chr6 48924824 48924857 -133490385 - L2 LINE L2 -85 3187 3155 359 304 38 46 chr6 48924872 48925135 -133490107 + L2 LINE L2 2628 2888 -426 21 36 0 0 chr6 48925307 48925335 -133489907 + AT_rich Low_complexity Low_complexity 1 28 0 1695 113 8 4 chr6 48925609 48925849 -133489393 + AluSq SINE Alu 1 241 -72 272 49 0 0 chr6 48925960 48926001 -133489241 + AluY SINE Alu 259 299 0 2171 102 3 0 chr6 48926011 48926316 -133488926 + AluSq SINE Alu 1 306 -7 2439 168 75 4 chr6 48926316 48926809 -133488433 + L1MB7 LINE L1 5598 6125 -59 792 239 0 17 chr6 48926809 48926985 -133488257 + AluJb SINE Alu 121 293 -19 2250 85 3 16 chr6 48928129 48928445 -133486797 + AluSx SINE Alu 1 312 0 1959 128 0 17 chr6 48928633 48928930 -133486312 + AluSx SINE Alu 1 292 -20 279 133 0 0 chr6 48928944 48928989 -133486253 + (T)n Simple_repeat Simple_repeat 1 45 0 1863 113 0 32 chr6 48929099 48929382 -133485860 - AluSq SINE Alu -39 274 1 2034 107 17 0 chr6 48929383 48929673 -133485569 - AluSx SINE Alu -17 295 1 1761 154 16 13 chr6 48929675 48929980 -133485262 - AluJb SINE Alu -6 306 1 2061 130 0 3 chr6 48929990 48930291 -133484951 - AluSx SINE Alu -12 300 1 21 0 0 0 chr6 48931743 48931764 -133483478 + AT_rich Low_complexity Low_complexity 1 21 0 386 227 49 92 chr6 48932488 48932651 -133482591 - L2 LINE L2 0 3313 3158 323 144 19 19 chr6 48933024 48933128 -133482114 + (TA)n Simple_repeat Simple_repeat 1 104 0 226 289 103 31 chr6 48934563 48934660 -133480582 - MIR SINE MIR -139 123 20 21 82 0 0 chr6 48936101 48936150 -133479092 + AT_rich Low_complexity Low_complexity 1 49 0 219 133 0 0 chr6 48938833 48938878 -133476364 + (TGG)n Simple_repeat Simple_repeat 2 46 0 2214 92 7 0 chr6 48940570 48940876 -133474366 + AluY SINE Alu 1 308 -3 224 323 40 30 chr6 48941112 48941211 -133474031 + L2 LINE L2 3170 3269 -3 228 229 66 0 chr6 48942375 48942436 -133472806 + L1MC4a LINE L1 6055 6119 -1689 2162 114 3 0 chr6 48942746 48943052 -133472190 + AluSx SINE Alu 1 307 -5 549 217 46 47 chr6 48943403 48943704 -133471538 + L1ME4a LINE L1 5489 5871 -250 430 323 164 0 chr6 48943769 48943989 -133471253 + L2 LINE L2 3054 3309 -4 1739 159 7 10 chr6 48944162 48944463 -133470779 + AluJb SINE Alu 1 300 -12 618 116 0 32 chr6 48945026 48945121 -133470121 + AluJ/FLAM SINE Alu 2 93 -219 1905 104 73 0 chr6 48945121 48945410 -133469832 + AluSx SINE Alu 1 310 -2 379 165 99 11 chr6 48945411 48945502 -133469740 + AluSg SINE Alu 2 100 -200 574 145 0 151 chr6 48945661 48945756 -133469486 + FLAM_C SINE Alu 2 110 -202 1257 206 75 0 chr6 48945756 48946037 -133469205 + AluSx SINE Alu 1 302 0 2027 87 33 4 chr6 48946046 48946321 -133468921 + AluSg SINE Alu 2 284 -26 574 145 0 151 chr6 48946321 48946381 -133468861 + FLAM_C SINE Alu 119 142 -170 256 343 137 20 chr6 48946469 48946615 -133468627 - L2 LINE L2 -187 3085 2923 357 279 155 59 chr6 48946683 48947141 -133468101 - L2 LINE L2 -5 3308 2807 1325 282 137 26 chr6 48947177 48947841 -133467401 - L2 LINE L2 -697 2617 1880 214 333 93 20 chr6 48947902 48948052 -133467190 - L2 LINE L2 -464 2850 2690 1853 141 3 3 chr6 48948587 48948878 -133466364 + AluSx SINE Alu 1 291 -21 772 150 15 23 chr6 48949226 48949359 -133465883 - FLAM_C SINE Alu 0 133 2 4493 169 72 50 chr6 48949600 48949639 -133465603 + L1MC4 LINE L1 6877 6914 -1128 909 213 0 12 chr6 48949639 48949803 -133465439 + FRAM SINE Alu 2 163 -3 2264 110 0 0 chr6 48949803 48950113 -133465129 + AluSx SINE Alu 1 310 -2 4493 169 72 50 chr6 48950113 48950391 -133464851 + L1MC4 LINE L1 6914 7185 -857 1388 109 124 34 chr6 48950391 48950657 -133464585 + AluJb SINE Alu 1 290 -22 4493 169 72 50 chr6 48950657 48951320 -133463922 + L1MC4 LINE L1 7185 7832 -210 1938 141 0 0 chr6 48951320 48951610 -133463632 + AluSx SINE Alu 7 296 -16 4493 169 72 50 chr6 48951610 48951694 -133463548 + L1MC4 LINE L1 7832 7913 -129 1943 122 3 11 chr6 48951694 48951981 -133463261 + AluSq SINE Alu 1 285 -28 423 56 0 0 chr6 48951981 48952035 -133463207 + (CAT)n Simple_repeat Simple_repeat 2 55 0 4493 169 72 50 chr6 48952035 48952110 -133463132 + L1MC4 LINE L1 7912 8041 -1 356 132 0 0 chr6 48952661 48952714 -133462528 - MER66A LTR ERV1 -140 338 286 271 252 137 38 chr6 48952731 48952862 -133462380 - MIR SINE MIR -112 150 7 2250 93 0 19 chr6 48953196 48953509 -133461733 - AluY SINE Alu -4 307 1 748 176 0 23 chr6 48953790 48953921 -133461321 + AluJb SINE Alu 2 129 -183 228 67 0 0 chr6 48953926 48953956 -133461286 + (CA)n Simple_repeat Simple_repeat 2 31 0 432 289 48 63 chr6 48956450 48956598 -133458644 - MIR SINE MIR -61 147 1 631 198 153 13 chr6 48957909 48958066 -133457176 + MER5A DNA MER1_type 9 187 -2 2121 89 0 48 chr6 48958084 48958397 -133456845 - AluY SINE Alu -13 298 1 1870 116 7 14 chr6 48958399 48958691 -133456551 - AluSx SINE Alu -22 290 1 2707 130 44 26 chr6 48960445 48960946 -133454296 + L1MB8 LINE L1 5668 6177 -1 1313 205 35 42 chr6 48961119 48961407 -133453835 + AluJo SINE Alu 2 287 -15 24 0 0 0 chr6 48961408 48961432 -133453810 + AT_rich Low_complexity Low_complexity 1 24 0 1875 135 0 14 chr6 48961709 48962006 -133453236 + AluJo SINE Alu 1 293 -19 878 66 66 0 chr6 48962015 48962136 -133453106 + AluSg1 SINE Alu 1 129 -180 1635 123 20 0 chr6 48962237 48962481 -133452761 - AluSx SINE Alu -63 249 1 29 28 0 0 chr6 48962782 48962818 -133452424 + AT_rich Low_complexity Low_complexity 1 36 0 1268 191 110 22 chr6 48965203 48965475 -133449767 + AluJb SINE Alu 2 297 -5 322 308 193 48 chr6 48965618 48965949 -133449293 - L2 LINE L2 -52 3261 2883 360 120 0 7 chr6 48966049 48966128 -133449114 - AluS SINE Alu -242 59 1 531 270 25 51 chr6 48966129 48966325 -133448917 + L2 LINE L2 3122 3312 -1 543 222 184 86 chr6 48966333 48966648 -133448594 - L2 LINE L2 -611 2703 2358 1015 176 0 0 chr6 48966817 48967004 -133448238 + AluSg/x SINE Alu 115 301 -9 485 259 49 21 chr6 48967137 48967280 -133447962 + MIR SINE MIR 2 148 -114 21 36 0 0 chr6 48968230 48968258 -133446984 + GC_rich Low_complexity Low_complexity 1 28 0 185 164 0 18 chr6 48968378 48968433 -133446809 + (CCG)n Simple_repeat Simple_repeat 3 56 0 704 141 0 0 chr6 48968577 48968676 -133446566 - AluJ/FLAM SINE Alu -212 100 2 2118 213 52 48 chr6 48968991 48969531 -133445711 - MLT1F LTR MaLR 0 542 1 1624 236 91 96 chr6 48969620 48969680 -133445562 - L1ME3A LINE L1 -7 6163 6104 2078 101 0 0 chr6 48969680 48969999 -133445243 + AluSx SINE Alu 5 323 0 1624 236 91 96 chr6 48969999 48970241 -133445001 - L1ME3A LINE L1 -66 6104 5862 1213 189 43 39 chr6 48970241 48970547 -133444695 + AluJo SINE Alu 1 307 0 1624 236 91 96 chr6 48970547 48971056 -133444186 - L1ME3A LINE L1 -308 5862 5353 2168 105 0 10 chr6 48971063 48971368 -133443874 - AluSx SINE Alu -10 302 1 621 254 0 8 chr6 48971467 48971601 -133443641 - FLAM_A SINE Alu 0 133 1 2103 103 0 39 chr6 48971613 48971924 -133443318 - AluSx SINE Alu -13 299 1 2075 118 3 3 chr6 48971933 48972239 -133443003 - AluSx SINE Alu -6 306 1 1833 166 24 37 chr6 48972626 48973005 -133442237 - MLT1A2 LTR MaLR 0 374 1 2200 67 13 22 chr6 48973693 48974006 -133441236 + AluY SINE Alu 1 310 -1 30 77 0 0 chr6 48974893 48974958 -133440284 + AT_rich Low_complexity Low_complexity 1 65 0 1437 143 128 12 chr6 48975064 48975322 -133439920 - AluJo SINE Alu -14 288 1 870 162 98 56 chr6 48975514 48975893 -133439349 - LTR7 LTR ERV1 -13 437 1 471 122 20 51 chr6 48976604 48976702 -133438540 + AluJ/FRAM SINE Alu 217 311 -1 252 301 27 0 chr6 48976799 48976872 -133438370 - L2 LINE L2 -208 3064 2990 287 316 26 17 chr6 48977064 48977181 -133438061 - L2 LINE L2 -330 2942 2825 1002 148 0 0 chr6 48977307 48977456 -133437786 - AluJo SINE Alu -80 232 84 1699 155 10 16 chr6 48977466 48977769 -133437473 - AluJo SINE Alu -11 301 1 1020 136 0 0 chr6 48977976 48978123 -133437119 + AluJo SINE Alu 5 151 -161 1259 183 83 21 chr6 48978246 48978535 -133436707 + AluJo SINE Alu 1 307 -5 554 312 81 26 chr6 48978555 48978863 -133436379 + HAL1 LINE L1 117 441 -2066 233 343 68 0 chr6 48978963 48979036 -133436206 - L2 LINE L2 -40 3232 3155 348 293 0 23 chr6 48979474 48979607 -133435635 - LTR67 LTR ERVL 0 557 428 2048 118 0 23 chr6 48979877 48980183 -133435059 - AluSx SINE Alu -13 299 1 966 291 92 31 chr6 48980241 48980729 -133434513 - ERVL LTR ERVL -335 5429 4912 2023 172 55 70 chr6 48980750 48981238 -133434004 + MLT1D LTR MaLR 1 481 -24 1598 166 35 10 chr6 48981252 48981542 -133433700 - AluJb SINE Alu -15 297 1 2108 112 3 3 chr6 48981684 48981988 -133433254 - AluSq SINE Alu -9 304 1 593 294 12 45 chr6 48982126 48982547 -133432695 - ERVL LTR ERVL -1130 4524 4053 295 293 32 16 chr6 48982978 48983101 -133432141 + LTR67 LTR ERVL 432 556 -1 670 325 124 24 chr6 48983169 48983214 -133432028 - ERVL LTR ERVL -1837 3927 3888 1844 76 90 48 chr6 48983214 48983504 -133431738 - AluY SINE Alu -9 302 1 670 325 124 24 chr6 48983504 48983917 -133431325 - ERVL LTR ERVL -1876 3888 3423 516 337 72 39 chr6 48984292 48984624 -133430618 - ERVL LTR ERVL -2050 2946 2604 195 42 0 0 chr6 48984684 48984708 -133430534 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 186 43 0 0 chr6 48984752 48984775 -133430467 + (TC)n Simple_repeat Simple_repeat 2 24 0 714 175 7 44 chr6 48984775 48984800 -133430442 - FLAM_C SINE Alu -169 133 109 2067 121 0 0 chr6 48984800 48985089 -133430153 + AluSx SINE Alu 1 289 -23 225 0 0 0 chr6 48985089 48985114 -133430128 + (GA)n Simple_repeat Simple_repeat 2 26 0 714 175 7 44 chr6 48985114 48985224 -133430018 - FLAM_C SINE Alu -191 111 2 285 216 0 62 chr6 48985226 48985323 -133429919 - L1ME3 LINE L1 -150 6012 5922 * 369 208 10 52 chr6 48985321 48985417 -133429825 - L1ME3 LINE L1 -621 5543 5452 271 138 0 86 chr6 48985429 48985487 -133429755 + MER74B LTR ERVL 1 53 -569 2085 113 0 0 chr6 48985849 48986169 -133429073 + AluSx SINE Alu 1 320 0 1704 162 0 32 chr6 48986627 48986936 -133428306 + AluJo SINE Alu 1 299 -13 822 210 13 0 chr6 48987046 48987203 -133428039 + L1ME1 LINE L1 5774 5932 -234 727 185 8 0 chr6 48987203 48987333 -133427909 + AluJo/FLAM SINE Alu 1 131 -171 885 88 80 0 chr6 48987335 48987460 -133427782 + AluSp SINE Alu 1 135 -178 1372 65 6 0 chr6 48987480 48987685 -133427557 + AluSp SINE Alu 114 319 0 1734 155 0 11 chr6 48987694 48987972 -133427270 + AluJb SINE Alu 1 275 -37 835 209 91 9 chr6 48987984 48988204 -133427038 + L1ME1 LINE L1 5924 6161 -5 409 250 58 41 chr6 48988257 48988429 -133426813 + L1MEd LINE L1 4 178 -5941 1462 141 60 12 chr6 48988611 48988900 -133426342 + L1M4 LINE L1 5304 5614 -570 322 226 11 43 chr6 48988901 48988994 -133426248 + MER21B LTR ERV1 159 248 -615 1540 215 44 36 chr6 48989027 48989413 -133425829 + MER21B LTR ERV1 329 717 -146 309 135 0 0 chr6 48989701 48989753 -133425489 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 830 91 0 0 chr6 48990219 48990352 -133424890 + AluSg/x SINE Alu 176 308 0 637 345 4 0 chr6 48990880 48991132 -133424110 + Harlequin LTR ERV1 718 970 -6815 1281 299 50 35 chr6 48991367 48992115 -133423127 + Harlequin LTR ERV1 1290 2048 -5737 2166 167 70 32 chr6 48992131 48992573 -133422669 + LTR2B LTR ERV1 32 490 0 203 265 0 0 chr6 48992574 48992623 -133422619 + GA-rich Low_complexity Low_complexity 4 52 0 213 39 0 0 chr6 48992641 48992667 -133422575 + (GA)n Simple_repeat Simple_repeat 2 27 0 552 152 131 0 chr6 48992667 48992766 -133422476 + LTR18B LTR ERVL 346 457 -157 * 674 129 8 32 chr6 48992764 48992888 -133422354 + LTR18B LTR ERVL 225 345 -269 313 309 0 46 chr6 48992903 48992961 -133422281 + GA-rich Low_complexity Low_complexity 1 60 -107 2458 68 0 3 chr6 48992961 48993272 -133421970 + AluY SINE Alu 1 310 -1 313 309 0 46 chr6 48993272 48993388 -133421854 + GA-rich Low_complexity Low_complexity 60 167 0 230 327 60 48 chr6 48993537 48993590 -133421652 + L3 LINE CR1 1408 1459 -118 2163 96 0 17 chr6 48993590 48993891 -133421351 + AluSc SINE Alu 1 296 -13 230 327 60 48 chr6 48993891 48994005 -133421237 + L3 LINE CR1 1459 1577 0 764 241 115 12 chr6 48994067 48994320 -133420922 - MER102b DNA MER1_type -3 338 60 2281 79 23 0 chr6 48994422 48994725 -133420517 + AluSx SINE Alu 1 310 -2 1188 330 34 39 chr6 48995177 48996065 -133419177 + Harlequin LTR ERV1 3104 3986 -2663 658 314 7 21 chr6 48996080 48996132 -133419110 + Harlequin LTR ERV1 5473 5524 -2261 2171 65 0 35 chr6 48996132 48996422 -133418820 + AluY SINE Alu 21 300 -11 658 314 7 21 chr6 48996422 48996659 -133418583 + Harlequin LTR ERV1 5524 5758 -2027 303 297 8 31 chr6 48996888 48997016 -133418226 + Harlequin LTR ERV1 3028 3152 -3744 2196 66 10 17 chr6 48997368 48997669 -133417573 - AluY SINE Alu -12 299 1 721 264 61 87 chr6 48997733 48997817 -133417425 + Harlequin LTR ERV1 3386 3471 -3425 1923 96 10 48 chr6 48997817 48998130 -133417112 - AluSx SINE Alu -11 301 1 721 264 61 87 chr6 48998130 48998732 -133416510 + Harlequin LTR ERV1 3471 4054 -2842 755 234 0 0 chr6 48999414 48999551 -133415691 - FRAM SINE Alu -39 137 1 2356 79 0 9 chr6 49000056 49000372 -133414870 + AluSq SINE Alu 1 313 0 1873 138 0 22 chr6 49000392 49000703 -133414539 + AluSx SINE Alu 1 304 -8 732 274 151 38 chr6 49000760 49001158 -133414084 + LTR67 LTR ERVL 102 544 -13 2257 97 3 7 chr6 49001405 49001705 -133413537 + AluSq SINE Alu 1 299 -14 253 259 130 28 chr6 49001827 49001935 -133413307 - L2 LINE L2 -16 3297 3179 537 256 17 44 chr6 49002120 49002286 -133412956 + MIR SINE MIR 33 195 -67 2397 102 39 0 chr6 49002286 49002647 -133412595 - THE1C LTR MaLR 0 375 1 537 256 17 44 chr6 49002647 49002660 -133412582 + MIR SINE MIR 195 207 -55 307 347 0 16 chr6 49003228 49003352 -133411890 - MIR SINE MIR 0 262 141 338 256 183 7 chr6 49003419 49003556 -133411686 - MIR SINE MIR -97 165 5 313 257 46 64 chr6 49003556 49003665 -133411577 + MIR SINE MIR 156 262 0 1320 225 72 45 chr6 49003797 49004215 -133411027 - L2 LINE L2 0 3313 2885 495 292 62 26 chr6 49004213 49004251 -133410991 - L2 LINE L2 -1132 2182 2147 * 1347 212 79 79 chr6 49004251 49004708 -133410534 - LTR16A1 LTR ERVL 0 457 1 495 292 62 26 chr6 49004708 49004861 -133410381 - L2 LINE L2 -1167 2147 1984 2539 233 15 9 chr6 49004914 49005446 -133409796 + MLT1F LTR MaLR 8 542 0 1400 216 141 75 chr6 49005447 49005634 -133409608 - L2 LINE L2 -1353 1961 1788 2376 80 10 0 chr6 49005634 49005922 -133409320 + AluSx SINE Alu 1 291 -21 1400 216 141 75 chr6 49005922 49006030 -133409212 - L2 LINE L2 -1526 1788 1689 2087 133 10 3 chr6 49006030 49006323 -133408919 + AluJb SINE Alu 1 295 -17 1400 216 141 75 chr6 49006323 49006650 -133408592 - L2 LINE L2 -1625 1689 1297 377 246 128 67 chr6 49006665 49006691 -133408551 + Charlie2 DNA MER1_type 48 71 -2711 2368 98 0 7 chr6 49006691 49006988 -133408254 - AluSg SINE Alu -15 295 1 377 246 128 67 chr6 49006988 49007156 -133408086 + Charlie2 DNA MER1_type 71 254 -2528 210 325 0 36 chr6 49007163 49007246 -133407996 + MIR SINE MIR 2 81 -181 1270 267 75 6 chr6 49007246 49007568 -133407674 + MLT1F LTR MaLR 1 344 -198 939 128 15 0 chr6 49007569 49007702 -133407540 + AluJb SINE Alu 2 136 -176 1703 155 16 53 chr6 49007703 49007991 -133407251 + AluJb SINE Alu 3 279 -33 186 43 0 0 chr6 49007991 49008014 -133407228 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1703 155 16 53 chr6 49008014 49008047 -133407195 + AluJb SINE Alu 279 312 0 3013 175 76 30 chr6 49008055 49008119 -133407123 + L1MD2 LINE L1 5219 5279 -1080 2038 144 3 28 chr6 49008119 49008438 -133406804 + AluSx SINE Alu 1 311 -1 3013 175 76 30 chr6 49008438 49008515 -133406727 + L1MD2 LINE L1 5279 5351 -1008 1400 154 142 4 chr6 49008515 49008775 -133406467 + AluSg1 SINE Alu 3 298 -11 3013 175 76 30 chr6 49008775 49009278 -133405964 + L1MD2 LINE L1 5351 5899 -460 2201 97 0 85 chr6 49009278 49009608 -133405634 + AluSx SINE Alu 1 302 -10 3013 175 76 30 chr6 49009608 49009703 -133405539 + L1MD2 LINE L1 5899 5988 -371 888 180 81 5 chr6 49009711 49009933 -133405309 + L1MB3 LINE L1 4362 4600 -1546 2884 57 0 0 chr6 49009934 49010301 -133404941 + L1PA7 LINE L1 5780 6146 -8 2187 161 26 67 chr6 49010308 49010395 -133404847 + L1MB3 LINE L1 5127 5216 -968 2156 137 0 3 chr6 49010395 49010695 -133404547 + AluSx SINE Alu 1 299 -13 2187 161 26 67 chr6 49010695 49010707 -133404535 + L1MB3 LINE L1 5216 5227 -957 1562 201 7 18 chr6 49010707 49010986 -133404256 + AluJb SINE Alu 1 276 -36 2187 161 26 67 chr6 49010986 49011492 -133403750 + L1MB3 LINE L1 5227 5706 -478 6836 181 71 45 chr6 49011493 49013082 -133402160 + MER52A LTR ERV1 1 1755 0 2408 97 0 0 chr6 49013094 49013402 -133401840 + AluY SINE Alu 1 308 -3 1586 156 70 151 chr6 49013407 49013925 -133401317 + L1MB3 LINE L1 5708 6183 0 755 117 8 0 chr6 49013921 49014041 -133401201 + L1MB7 LINE L1 5814 5934 -250 * 2347 109 0 3 chr6 49014106 49014409 -133400833 + AluSx SINE Alu 1 302 -10 500 192 39 0 chr6 49014447 49014551 -133400691 + L1MB7 LINE L1 5439 5546 -638 1194 139 0 0 chr6 49014551 49014717 -133400525 - AluJo SINE Alu -10 302 137 276 30 0 0 chr6 49014723 49014756 -133400486 + (TG)n Simple_repeat Simple_repeat 2 34 0 215 167 21 0 chr6 49014765 49014813 -133400429 + (TA)n Simple_repeat Simple_repeat 2 50 0 909 135 0 8 chr6 49014815 49014948 -133400294 - AluJo SINE Alu -180 132 1 2689 179 25 48 chr6 49014948 49015489 -133399753 + L1MB7 LINE L1 5537 6062 -122 1834 141 7 59 chr6 49015489 49015572 -133399670 + AluSx SINE Alu 1 87 -225 2560 58 0 0 chr6 49015572 49015866 -133399376 + AluY SINE Alu 1 294 -17 1834 141 7 59 chr6 49015866 49016087 -133399155 + AluSx SINE Alu 87 289 -23 2689 179 25 48 chr6 49016087 49016198 -133399044 + L1MB7 LINE L1 6062 6174 -10 594 138 0 0 chr6 49017062 49017149 -133398093 + 5S rRNA rRNA 1 87 -34 908 101 0 7 chr6 49017184 49017323 -133397919 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 807 169 0 7 chr6 49017556 49017692 -133397550 + AluJb SINE Alu 163 297 -15 210 37 0 0 chr6 49017700 49017727 -133397515 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1940 135 22 19 chr6 49017845 49018157 -133397085 - AluSp SINE Alu 0 313 1 2119 93 0 0 chr6 49018190 49018448 -133396794 + AluSx SINE Alu 41 298 -14 1014 80 14 11 chr6 49019049 49019200 -133396042 - THE1B LTR MaLR -29 335 198 359 281 120 6 chr6 49019414 49019581 -133395661 - MER5A DNA MER1_type -2 187 2 7962 112 19 76 chr6 49019643 49020063 -133395179 + Tigger1 DNA MER2_type 1 444 -1974 2112 118 4 0 chr6 49020063 49020343 -133394899 + AluSx SINE Alu 1 281 -31 342 0 0 0 chr6 49020346 49020384 -133394858 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 7962 112 19 76 chr6 49020384 49020403 -133394839 + Tigger1 DNA MER2_type 446 465 -1953 2528 87 0 0 chr6 49020403 49020712 -133394530 - AluSq SINE Alu -4 309 1 7962 112 19 76 chr6 49020712 49021300 -133393942 + Tigger1 DNA MER2_type 465 1085 -1333 2046 112 4 0 chr6 49021300 49021568 -133393674 - AluSg SINE Alu -39 271 3 7962 112 19 76 chr6 49021568 49021794 -133393448 + Tigger1 DNA MER2_type 1085 1167 -1251 2298 118 0 0 chr6 49021794 49022091 -133393151 - AluSx SINE Alu -15 297 1 7962 112 19 76 chr6 49022091 49022291 -133392951 + Tigger1 DNA MER2_type 1167 1377 -1041 1980 113 16 3 chr6 49022588 49022907 -133392335 - Tigger1 DNA MER2_type -1444 974 652 906 123 0 0 chr6 49022907 49023037 -133392205 + AluSg/x SINE Alu 181 310 0 1180 98 0 74 chr6 49023039 49023092 -133392150 + Tigger1 DNA MER2_type 1403 1458 -960 2105 147 0 3 chr6 49023092 49023404 -133391838 - AluSx SINE Alu -1 311 1 1883 155 3 17 chr6 49023414 49023705 -133391537 - AluJo SINE Alu -25 287 1 1180 98 0 74 chr6 49023705 49023843 -133391399 + Tigger1 DNA MER2_type 1467 1590 -828 793 171 0 0 chr6 49023843 49023972 -133391270 + FLAM_C SINE Alu 2 130 -3 10766 62 14 14 chr6 49023994 49025383 -133389859 + SVA Other Other 3 1391 0 980 80 49 31 chr6 49025391 49025554 -133389688 + Tigger1 DNA MER2_type 1583 1748 -670 659 179 0 0 chr6 49025554 49025666 -133389576 + FLAM_C SINE Alu 2 113 -30 454 264 63 69 chr6 49025979 49026107 -133389135 - MIR SINE MIR -10 252 124 2280 60 3 40 chr6 49026107 49026405 -133388837 + AluSc SINE Alu 1 287 -22 454 264 63 69 chr6 49026405 49026450 -133388792 - MIR SINE MIR -138 124 80 375 161 0 115 chr6 49026545 49026675 -133388567 - FLAM_A SINE Alu -18 115 1 236 315 10 33 chr6 49027595 49027792 -133387450 + MIR SINE MIR 20 261 -1 288 333 58 35 chr6 49028499 49028670 -133386572 - MIR3 SINE MIR -15 193 19 207 45 0 68 chr6 49028700 49028744 -133386498 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 342 0 0 0 chr6 49028744 49028782 -133386460 + (TG)n Simple_repeat Simple_repeat 1 38 0 1000 201 6 0 chr6 49028799 49028978 -133386264 - AluJ SINE Alu -7 305 126 554 122 215 0 chr6 49028995 49029102 -133386140 + AluSg SINE Alu 2 131 -179 1240 115 344 9 chr6 49029105 49029323 -133385919 + AluSg1 SINE Alu 1 291 -18 850 173 0 0 chr6 49029324 49029451 -133385791 - AluJ SINE Alu -185 127 1 2128 142 0 0 chr6 49029466 49029762 -133385480 - AluSx SINE Alu -16 296 1 923 80 0 0 chr6 49029848 49029961 -133385281 + AluSc SINE Alu 163 275 -34 2159 124 3 3 chr6 49030096 49030395 -133384847 - AluSx SINE Alu -13 299 1 2268 110 0 3 chr6 49030734 49031033 -133384209 - AluSx SINE Alu -14 298 1 570 159 40 40 chr6 49031037 49031163 -133384079 - L1PA16 LINE L1 -4 6162 6037 786 240 88 5 chr6 49032836 49033053 -133382189 + MIR SINE MIR 17 251 -11 2232 123 10 0 chr6 49034622 49034915 -133380327 + AluSx SINE Alu 1 296 -16 316 203 40 0 chr6 49036303 49036377 -133378865 - MLT1K LTR MaLR 0 588 512 22 0 0 0 chr6 49036751 49036773 -133378469 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr6 49036805 49036829 -133378413 + (A)n Simple_repeat Simple_repeat 1 24 0 195 400 69 17 chr6 49037421 49037596 -133377646 - L2 LINE L2 -6 3307 3124 208 315 165 0 chr6 49037601 49037728 -133377514 - L2 LINE L2 -1493 1821 1674 1092 140 0 6 chr6 49038778 49038942 -133376300 - AluJb SINE Alu -17 295 133 213 39 0 0 chr6 49038942 49038968 -133376274 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2346 88 0 0 chr6 49038969 49039253 -133375989 - AluSc SINE Alu -25 284 1 2159 135 0 0 chr6 49039325 49039628 -133375614 - AluSx SINE Alu -9 303 1 251 296 102 0 chr6 49039743 49039831 -133375411 + L2 LINE L2 3187 3283 -30 1482 135 0 152 chr6 49039852 49039961 -133375281 + AluJb SINE Alu 1 125 -177 2350 77 0 7 chr6 49039961 49040248 -133374994 + AluSg SINE Alu 9 293 -17 1482 135 0 152 chr6 49040248 49040494 -133374748 + AluJb SINE Alu 125 302 0 2496 76 0 0 chr6 49040567 49040858 -133374384 + AluSc SINE Alu 1 291 -18 438 286 181 0 chr6 49040889 49041071 -133374171 + MIR SINE MIR 48 262 0 1978 138 0 51 chr6 49041534 49041680 -133373562 + AluJb SINE Alu 1 124 -188 2010 114 0 15 chr6 49041680 49041951 -133373291 + AluSx SINE Alu 24 290 -22 1978 138 0 51 chr6 49041951 49042116 -133373126 + AluJb SINE Alu 124 296 -16 2622 66 0 0 chr6 49046214 49046517 -133368725 - AluSg SINE Alu -7 303 1 453 275 105 20 chr6 49050654 49050854 -133364388 + MIR SINE MIR 46 262 0 1040 125 0 0 chr6 49051623 49051759 -133363483 + AluSq/x SINE Alu 1 136 -176 2332 99 17 0 chr6 49051759 49052061 -133363181 + AluSx SINE Alu 1 307 -5 421 223 22 86 chr6 49052063 49052202 -133363040 + MIR SINE MIR 86 215 -47 298 259 153 15 chr6 49052677 49052808 -133362434 + MIR SINE MIR 104 252 -10 2140 117 16 7 chr6 49052838 49053147 -133362095 + AluSx SINE Alu 1 312 0 205 167 0 0 chr6 49054171 49054207 -133361035 + (CGGA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr6 49055003 49055037 -133360205 + GC_rich Low_complexity Low_complexity 1 34 0 2233 71 4 11 chr6 49055762 49056042 -133359200 + AluSx SINE Alu 1 278 -34 326 280 122 0 chr6 49056412 49056519 -133358723 + L1ME4a LINE L1 5709 5828 -293 320 252 30 89 chr6 49056593 49056689 -133358553 + L1ME4a LINE L1 5977 6064 -57 2588 58 0 10 chr6 49056689 49057001 -133358241 - AluY SINE Alu -2 309 1 320 252 30 89 chr6 49057001 49057039 -133358203 + L1ME4a LINE L1 6064 6103 -18 676 162 201 7 chr6 49057040 49057194 -133358048 - AluSg/x SINE Alu 0 310 127 577 240 74 0 chr6 49057215 49057390 -133357852 + L2 LINE L2 3118 3305 -8 2320 89 3 3 chr6 49057410 49057713 -133357529 - AluSx SINE Alu -9 303 1 534 236 201 3 chr6 49057971 49057992 -133357250 - L1ME4a LINE L1 -65 6056 6040 2287 112 3 0 chr6 49057992 49058296 -133356946 + AluSp SINE Alu 1 305 -8 534 236 201 3 chr6 49058296 49058562 -133356680 - L1ME4a LINE L1 -81 6040 5712 400 183 43 78 chr6 49058837 49058952 -133356290 + L2 LINE L2 607 717 -2597 1858 234 57 30 chr6 49058957 49059483 -133355759 + MLT1H LTR MaLR 8 547 -2 4528 248 117 31 chr6 49059529 49059689 -133355553 + L2 LINE L2 793 938 -2376 955 154 73 81 chr6 49059689 49059821 -133355421 + ORSL DNA AcHobo 2 133 -142 2387 91 3 0 chr6 49059821 49060118 -133355124 - AluSp SINE Alu -15 298 1 955 154 73 81 chr6 49060118 49060258 -133354984 + ORSL DNA AcHobo 133 272 -3 4528 248 117 31 chr6 49060258 49060275 -133354967 + L2 LINE L2 938 952 -2362 2373 98 0 22 chr6 49060275 49060591 -133354651 - AluSx SINE Alu -1 311 3 4528 248 117 31 chr6 49060591 49060783 -133354459 + L2 LINE L2 952 1126 -2188 2207 116 0 10 chr6 49060783 49061084 -133354158 - AluY SINE Alu -13 298 1 4528 248 117 31 chr6 49061084 49062088 -133353154 + L2 LINE L2 1126 2043 -1271 701 128 0 114 chr6 49062088 49062237 -133353005 + FLAM_C SINE Alu 1 132 -1 4528 248 117 31 chr6 49062237 49062563 -133352679 + L2 LINE L2 2043 2340 -974 2076 108 4 0 chr6 49062563 49062841 -133352401 - AluSp SINE Alu -5 308 30 4528 248 117 31 chr6 49062841 49062893 -133352349 + L2 LINE L2 2340 2698 -616 1198 227 0 0 chr6 49062913 49063182 -133352060 + L1MD3 LINE L1 7727 7995 0 691 238 73 77 chr6 49063212 49063323 -133351919 + L2 LINE L2 2776 2886 -427 2346 81 0 36 chr6 49063323 49063632 -133351610 - AluY SINE Alu -13 298 1 691 238 73 77 chr6 49063632 49063856 -133351386 + L2 LINE L2 2886 3114 -199 2514 71 0 3 chr6 49063856 49064165 -133351077 - AluSg SINE Alu -2 308 1 691 238 73 77 chr6 49064165 49064176 -133351066 + L2 LINE L2 3114 3124 -189 206 156 0 0 chr6 49064349 49064381 -133350861 - L3 LINE CR1 -137 1440 1409 1055 143 32 74 chr6 49064383 49064434 -133350808 + AluJo SINE Alu 85 137 -175 2147 107 24 0 chr6 49064434 49064732 -133350510 + AluY SINE Alu 1 305 -6 1055 143 32 74 chr6 49064732 49064923 -133350319 + AluJo SINE Alu 137 312 0 224 371 145 11 chr6 49065153 49065511 -133349731 - L2 LINE L2 -682 2632 2227 1371 233 106 55 chr6 49065511 49065741 -133349501 - L2 LINE L2 -1 3312 3095 2343 97 3 0 chr6 49065741 49066040 -133349202 + AluSp SINE Alu 1 300 -13 1371 233 106 55 chr6 49066040 49066659 -133348583 - L2 LINE L2 -218 3095 2414 213 272 22 11 chr6 49066699 49066791 -133348451 - L2 LINE L2 -1410 1904 1812 2122 100 50 7 chr6 49066930 49067230 -133348012 - AluSq SINE Alu 0 313 1 2074 108 36 0 chr6 49067689 49067967 -133347275 - AluSx SINE Alu -24 288 1 2530 76 3 0 chr6 49068378 49068679 -133346563 + AluY SINE Alu 1 302 -9 284 261 68 118 chr6 49068795 49069000 -133346242 - HAL1 LINE L1 -2112 395 220 2500 86 0 0 chr6 49069000 49069301 -133345941 - AluY SINE Alu -10 301 1 284 261 68 118 chr6 49069301 49069509 -133345733 - HAL1 LINE L1 -2287 220 3 21 57 0 0 chr6 49070773 49070808 -133344434 + AT_rich Low_complexity Low_complexity 1 35 0 2378 113 3 0 chr6 49070892 49071201 -133344041 - AluSx SINE Alu -2 310 1 221 350 21 21 chr6 49071249 49071346 -133343896 - MIR SINE MIR -89 119 23 221 240 21 52 chr6 49071623 49071670 -133343572 + (TATATG)n Simple_repeat Simple_repeat 3 47 -48 2139 92 20 17 chr6 49071670 49071801 -133343441 + AluSx SINE Alu 3 132 -180 2290 113 3 3 chr6 49071801 49072110 -133343132 + AluSg SINE Alu 1 309 -1 2139 92 20 17 chr6 49072110 49072273 -133342969 + AluSx SINE Alu 132 298 -14 221 240 21 52 chr6 49072273 49072321 -133342921 + (TATATG)n Simple_repeat Simple_repeat 47 95 0 305 250 231 0 chr6 49072349 49072457 -133342785 - MIR SINE MIR -40 222 90 1838 192 40 22 chr6 49072693 49073142 -133342100 - LTR2B LTR ERV1 0 490 1 1488 108 20 0 chr6 49073363 49073567 -133341675 - AluSg/x SINE Alu -24 288 81 1925 142 7 7 chr6 49073598 49073880 -133341362 + AluJb SINE Alu 3 284 -28 2161 102 0 84 chr6 49075813 49075988 -133339254 - AluSx SINE Alu -8 304 116 207 0 0 0 chr6 49075988 49076011 -133339231 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2259 44 33 11 chr6 49076013 49076286 -133338956 - AluY SINE Alu -31 280 2 2161 102 0 84 chr6 49076286 49076439 -133338803 - AluSx SINE Alu -197 115 1 198 204 184 0 chr6 49076439 49076488 -133338754 - L3 LINE CR1 -109 1468 1411 613 163 21 21 chr6 49076624 49076765 -133338477 + AluSg/x SINE Alu 159 299 -13 443 278 21 91 chr6 49076823 49076874 -133338368 - MIR SINE MIR -73 189 136 2256 122 0 0 chr6 49076874 49077177 -133338065 - AluSx SINE Alu -9 303 1 443 278 21 91 chr6 49077177 49077312 -133337930 - MIR SINE MIR -126 136 16 925 248 191 75 chr6 49077330 49077863 -133337379 + MLT1G LTR MaLR 1 590 0 341 250 65 19 chr6 49077897 49078005 -133337237 + MIR3 SINE MIR 94 206 -2 421 277 13 45 chr6 49078202 49078375 -133336867 + MIR SINE MIR 36 206 -32 2370 103 14 30 chr6 49078725 49079095 -133336147 + THE1B LTR MaLR 1 364 0 253 337 22 0 chr6 49079496 49079585 -133335657 + MIR SINE MIR 53 143 -119 824 242 31 14 chr6 49079594 49079817 -133335425 - MIR SINE MIR -29 233 7 2345 95 24 0 chr6 49081161 49081457 -133333785 + AluSq SINE Alu 1 303 -10 1956 118 34 0 chr6 49081730 49081993 -133333249 + AluSx SINE Alu 1 272 -40 2404 110 0 0 chr6 49082030 49082339 -133332903 + AluSx SINE Alu 2 310 -2 2216 108 3 0 chr6 49082340 49082756 -133332486 - AluSx SINE Alu 0 417 1 561 147 0 85 chr6 49082781 49082910 -133332332 - LTR38B LTR ERV1 -492 118 1 1524 143 0 119 chr6 49083271 49083614 -133331628 + AluJo SINE Alu 1 302 0 1992 135 25 19 chr6 49083637 49083678 -133331564 - L1MB3 LINE L1 -166 6017 5978 2374 105 3 0 chr6 49083678 49083983 -133331259 - AluSg SINE Alu -4 306 1 1992 135 25 19 chr6 49083983 49084305 -133330937 - L1MB3 LINE L1 -205 5978 5652 2056 98 76 4 chr6 49084318 49084594 -133330648 - AluSp SINE Alu -17 296 1 723 125 0 0 chr6 49085580 49085684 -133329558 + U6 snRNA snRNA 1 104 -3 2346 86 0 0 chr6 49085697 49086008 -133329234 + AluSg1 SINE Alu 1 311 0 2224 124 3 0 chr6 49086008 49086306 -133328936 + AluSq SINE Alu 1 299 -14 1699 115 0 0 chr6 49086583 49086801 -133328441 - AluSg/x SINE Alu -13 299 82 28 29 0 0 chr6 49086809 49086844 -133328398 + AT_rich Low_complexity Low_complexity 1 35 0 1349 224 112 26 chr6 49087516 49087542 -133327700 - L2 LINE L2 0 3313 3291 2054 99 31 62 chr6 49087542 49087864 -133327378 + AluSx SINE Alu 1 312 0 1349 224 112 26 chr6 49087864 49088220 -133327022 - L2 LINE L2 -22 3291 2898 248 311 112 72 chr6 49088232 49088509 -133326733 - L2 LINE L2 -19 3253 2966 657 217 106 5 chr6 49090878 49090905 -133324337 + MIR SINE MIR 10 33 -229 919 195 6 0 chr6 49090905 49091079 -133324163 + FAM SINE Alu 1 175 0 2297 90 0 39 chr6 49091084 49091396 -133323846 + AluSc SINE Alu 1 300 -9 657 217 106 5 chr6 49091396 49091569 -133323673 + MIR SINE MIR 36 237 -25 911 194 32 68 chr6 49091829 49091911 -133323331 - MIR SINE MIR 0 262 179 2069 130 13 3 chr6 49091911 49092210 -133323032 - AluSq SINE Alu -11 302 1 911 194 32 68 chr6 49092210 49092379 -133322863 - MIR SINE MIR -83 179 20 27 49 0 0 chr6 49092919 49092960 -133322282 + AT_rich Low_complexity Low_complexity 1 41 0 209 170 0 130 chr6 49093748 49093848 -133321394 + L2 LINE L2 2553 2639 -675 * 563 309 174 26 chr6 49093845 49094156 -133321086 + L2 LINE L2 2915 3271 -1 2329 117 0 0 chr6 49094236 49094534 -133320708 + AluSg SINE Alu 1 298 -12 452 304 103 23 chr6 49095032 49095171 -133320071 + MIR SINE MIR 11 174 -88 1772 171 3 34 chr6 49095171 49095493 -133319749 + AluJo SINE Alu 1 312 0 452 304 103 23 chr6 49095493 49095567 -133319675 + MIR SINE MIR 174 241 -21 2402 98 0 3 chr6 49095570 49095877 -133319365 + AluSq SINE Alu 1 306 -7 2207 120 0 7 chr6 49096122 49096422 -133318820 - AluSx SINE Alu -14 298 1 2316 105 23 0 chr6 49097354 49097659 -133317583 - AluSx SINE Alu 0 312 1 2329 103 0 0 chr6 49097749 49098050 -133317192 - AluSx SINE Alu -11 301 1 252 213 173 0 chr6 49098884 49098959 -133316283 + MIR SINE MIR 36 123 -85 2500 70 0 7 chr6 49099265 49099566 -133315676 - AluSq SINE Alu -14 299 1 2477 72 3 10 chr6 49102680 49102984 -133312258 - AluSp SINE Alu -11 302 1 22 0 0 0 chr6 49104414 49104436 -133310806 + AT_rich Low_complexity Low_complexity 1 22 0 722 87 39 0 chr6 49106038 49106142 -133309100 - AluSx SINE Alu -4 305 198 901 96 8 0 chr6 49106142 49106267 -133308975 - AluSx SINE Alu -186 126 1 352 260 87 33 chr6 49108294 49108444 -133306798 - MIR3 SINE MIR -16 192 35 813 211 27 11 chr6 49108465 49108650 -133306592 - MER20 DNA MER1_type -1 218 31 1610 168 57 0 chr6 49109687 49109967 -133305275 + AluJo SINE Alu 10 305 -7 236 159 0 23 chr6 49111313 49111357 -133303885 - MIR SINE MIR -62 146 104 468 0 0 0 chr6 49113102 49113154 -133302088 + (CA)n Simple_repeat Simple_repeat 2 53 0 228 100 0 0 chr6 49113154 49113194 -133302048 + (TC)n Simple_repeat Simple_repeat 1 40 0 226 182 45 0 chr6 49113197 49113241 -133302001 - MIR3 SINE MIR -11 197 152 333 0 0 0 chr6 49113286 49113323 -133301919 + (CA)n Simple_repeat Simple_repeat 1 37 0 261 0 0 0 chr6 49113322 49113351 -133301891 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 226 182 45 0 chr6 49113354 49113398 -133301844 - MIR3 SINE MIR -11 197 152 270 0 0 0 chr6 49113442 49113472 -133301770 + (CA)n Simple_repeat Simple_repeat 2 31 0 * 315 0 0 0 chr6 49113471 49113506 -133301736 + (TC)n Simple_repeat Simple_repeat 1 35 0 268 312 167 0 chr6 49113509 49113647 -133301595 - MIR3 SINE MIR -11 197 37 2333 79 0 3 chr6 49115506 49115809 -133299433 - AluY SINE Alu -9 302 1 225 99 28 84 chr6 49116683 49116778 -133298464 + (CAGCC)n Simple_repeat Simple_repeat 1 89 0 248 235 7 0 chr6 49121225 49121361 -133293881 + G-rich Low_complexity Low_complexity 5 141 0 22 35 0 0 chr6 49121434 49121463 -133293779 + GC_rich Low_complexity Low_complexity 1 29 0 206 61 0 30 chr6 49121549 49121582 -133293660 + (CGG)n Simple_repeat Simple_repeat 3 34 0 193 195 0 24 chr6 49124660 49124701 -133290541 + L2 LINE L2 3172 3211 -61 2265 86 0 3 chr6 49125354 49125655 -133289587 + AluSg SINE Alu 1 300 -10 332 339 161 15 chr6 49125874 49126134 -133289108 + L2 LINE L2 2968 3265 -7 2167 67 27 27 chr6 49126386 49126686 -133288556 - AluY SINE Alu -11 300 1 23 0 0 0 chr6 49128167 49128190 -133287052 + GC_rich Low_complexity Low_complexity 1 23 0 1880 110 34 3 chr6 49130083 49130374 -133284868 - AluSg SINE Alu -10 300 1 394 270 202 6 chr6 49131261 49131439 -133283803 + MIR SINE MIR 42 254 -8 1581 127 31 52 chr6 49132929 49133220 -133282022 - AluSx SINE Alu -20 292 8 281 170 38 0 chr6 49133280 49133333 -133281909 + Alu SINE Alu 245 299 -3 2333 86 0 3 chr6 49135463 49135766 -133279476 + AluSp SINE Alu 1 302 -11 742 167 14 51 chr6 49136693 49136831 -133278411 - FLAM_A SINE Alu 0 133 1 831 278 146 19 chr6 49137575 49137953 -133277289 - L2 LINE L2 -6 3307 2882 1829 76 0 8 chr6 49138676 49138912 -133276330 - AluSc SINE Alu -21 288 55 2185 96 0 40 chr6 49140656 49140979 -133274263 + AluY SINE Alu 2 311 0 1458 166 62 21 chr6 49141035 49141324 -133273918 + AluJb SINE Alu 1 301 -11 2055 133 0 7 chr6 49141369 49141671 -133273571 + AluSx SINE Alu 1 300 -12 888 167 19 12 chr6 49141671 49141833 -133273409 + AluSg/x SINE Alu 134 296 -16 373 272 103 82 chr6 49143883 49144126 -133271116 + L2 LINE L2 2830 3077 -195 1834 133 44 3 chr6 49144257 49144551 -133270691 + AluSx SINE Alu 1 306 -6 450 0 0 0 chr6 49144608 49144658 -133270584 + (CA)n Simple_repeat Simple_repeat 2 51 0 1234 186 28 42 chr6 49144959 49145244 -133269998 + AluJo SINE Alu 19 299 -13 2029 122 11 0 chr6 49146110 49146396 -133268846 + AluSx SINE Alu 1 289 -23 1672 110 121 18 chr6 49146405 49146687 -133268555 + AluSx SINE Alu 1 311 -1 1223 95 0 0 chr6 49146702 49146860 -133268382 + AluSq SINE Alu 1 158 -155 1960 61 4 19 chr6 49146965 49147226 -133268016 + AluY SINE Alu 43 299 -12 1937 101 54 0 chr6 49147235 49147512 -133267730 + AluSx SINE Alu 1 292 -20 2139 125 0 0 chr6 49147527 49147824 -133267418 + AluSx SINE Alu 1 297 -15 2337 89 0 10 chr6 49147872 49148185 -133267057 + AluSg SINE Alu 1 310 0 1660 162 13 41 chr6 49148353 49148668 -133266574 - AluJo SINE Alu -6 306 1 657 260 20 20 chr6 49148818 49149018 -133266224 - MER58A DNA MER1_type -16 208 9 663 286 80 45 chr6 49149051 49149181 -133266061 + L1MC5 LINE L1 7352 7476 -485 1907 110 6 57 chr6 49149181 49149499 -133265743 + AluSx SINE Alu 1 302 -10 663 286 80 45 chr6 49149499 49149534 -133265708 + L1MC5 LINE L1 7476 7508 -453 1967 148 3 3 chr6 49149534 49149839 -133265403 - AluSx SINE Alu -1 311 7 663 286 80 45 chr6 49149839 49150008 -133265234 + L1MC5 LINE L1 7508 7699 -262 357 309 30 6 chr6 49150010 49150178 -133265064 - L1M4 LINE L1 -2376 3770 3599 278 322 62 5 chr6 49151128 49151336 -133263906 - L1M4 LINE L1 -2535 3611 3392 24 0 0 0 chr6 49151336 49151360 -133263882 + AT_rich Low_complexity Low_complexity 1 24 0 964 113 0 8 chr6 49151368 49151501 -133263741 + AluSq/x SINE Alu 1 132 -180 1956 133 0 16 chr6 49151503 49151638 -133263604 + AluSq SINE Alu 1 137 -176 1838 80 0 0 chr6 49151638 49151898 -133263344 + AluY SINE Alu 46 305 0 1956 133 0 16 chr6 49151898 49152069 -133263173 + AluSq SINE Alu 137 303 -10 549 178 139 0 chr6 49152071 49152172 -133263070 - FLAM_C SINE Alu -27 116 2 235 119 0 0 chr6 49152256 49152298 -133262944 - L1MB5 LINE L1 -6 6168 6127 3226 111 12 23 chr6 49152298 49152813 -133262429 + L1MA2 LINE L1 5796 6304 0 1353 201 64 24 chr6 49152838 49153170 -133262072 - L1MB5 LINE L1 -32 6142 5795 1960 141 0 16 chr6 49153174 49153478 -133261764 - AluSx SINE Alu -13 299 1 305 194 0 0 chr6 49153480 49153542 -133261700 - MER33 DNA MER1_type -210 114 53 23 0 0 0 chr6 49153542 49153565 -133261677 + AT_rich Low_complexity Low_complexity 1 23 0 354 177 16 0 chr6 49153570 49153632 -133261610 - U7 snRNA snRNA 0 63 1 389 209 3 0 chr6 49153632 49153718 -133261524 - MER33 DNA MER1_type -259 65 1 2174 108 0 59 chr6 49153797 49154121 -133261121 - AluSx SINE Alu -7 305 1 1602 248 59 62 chr6 49154145 49154579 -133260663 + L1ME3A LINE L1 5523 5956 -214 1580 179 48 0 chr6 49154579 49154852 -133260390 + AluJb SINE Alu 1 286 -26 1602 248 59 62 chr6 49154852 49155062 -133260180 + L1ME3A LINE L1 5956 6165 -5 1946 112 30 40 chr6 49155069 49155372 -133259870 - AluSq SINE Alu -13 300 1 24 32 0 0 chr6 49155811 49155842 -133259400 + AT_rich Low_complexity Low_complexity 1 31 0 606 181 95 9 chr6 49156040 49156156 -133259086 + AluSg SINE Alu 2 127 -183 2291 92 0 3 chr6 49156262 49156568 -133258674 - AluSx SINE Alu 0 305 1 2229 123 0 3 chr6 49156820 49157129 -133258113 + AluSx SINE Alu 1 308 -4 530 242 155 0 chr6 49157300 49157461 -133257781 - MER5A DNA MER1_type 0 189 4 282 73 0 0 chr6 49160114 49160155 -133255087 + (TA)n Simple_repeat Simple_repeat 1 41 0 2101 121 10 7 chr6 49160461 49160759 -133254483 - AluSx SINE Alu -13 299 1 681 200 0 0 chr6 49161362 49161477 -133253765 - FLAM_A SINE Alu -14 128 14 233 310 0 0 chr6 49162385 49162443 -133252799 + L2 LINE L2 3215 3272 0 718 220 0 0 chr6 49162505 49162637 -133252605 + FLAM_A SINE Alu 1 132 -1 1567 190 0 35 chr6 49162916 49163226 -133252016 - AluJo SINE Alu -13 299 1 890 173 0 0 chr6 49163229 49163362 -133251880 - AluJo/FLAM SINE Alu -179 133 1 1900 104 35 4 chr6 49163487 49163747 -133251495 - AluSq SINE Alu -41 272 5 2091 142 0 0 chr6 49163752 49164048 -133251194 - AluSx SINE Alu -16 296 1 397 282 18 9 chr6 49164279 49164389 -133250853 + MIR SINE MIR 33 143 -65 1568 201 40 0 chr6 49164427 49164725 -133250517 + AluJo SINE Alu 1 310 -2 330 26 0 0 chr6 49164906 49164945 -133250297 + (CA)n Simple_repeat Simple_repeat 2 40 0 187 265 36 36 chr6 49165175 49165258 -133249984 + MIR SINE MIR 175 257 -5 2172 102 3 23 chr6 49165501 49165806 -133249436 - AluSg1 SINE Alu -10 299 1 2302 97 13 0 chr6 49165809 49166118 -133249124 - AluSq SINE Alu 0 313 1 2264 106 3 3 chr6 49166334 49166637 -133248605 - AluSp SINE Alu -10 303 1 1713 179 7 7 chr6 49167641 49167938 -133247304 + AluJo SINE Alu 5 301 -11 3507 144 24 17 chr6 49167957 49168242 -133247000 + L1MB8 LINE L1 5537 5819 -359 2198 121 3 0 chr6 49168242 49168540 -133246702 + AluSx SINE Alu 1 299 -13 2282 112 0 0 chr6 49168540 49168835 -133246407 + AluY SINE Alu 1 295 -16 3507 144 24 17 chr6 49168835 49169186 -133246056 + L1MB8 LINE L1 5818 6178 0 2411 91 3 3 chr6 49169208 49169517 -133245725 + AluSp SINE Alu 1 309 -4 2190 103 3 3 chr6 49170410 49170701 -133244541 + AluSx SINE Alu 1 291 -21 1787 150 0 14 chr6 49171228 49171514 -133243728 - AluJb SINE Alu -30 282 1 2366 112 0 0 chr6 49172769 49173074 -133242168 - AluSx SINE Alu -7 305 1 339 254 36 27 chr6 49173838 49173948 -133241294 + MER46C DNA MER2_type 19 129 -209 192 338 0 0 chr6 49174075 49174143 -133241099 + MIR SINE MIR 1 68 -194 1620 182 3 36 chr6 49174522 49174830 -133240412 - AluJo SINE Alu -14 298 1 3192 125 26 43 chr6 49174881 49175324 -133239918 - Tigger3(Golem) DNA MER2_type 0 3028 2579 2023 147 3 0 chr6 49175324 49175617 -133239625 - AluSx SINE Alu -18 294 1 3192 125 26 43 chr6 49175617 49175643 -133239599 - Tigger3(Golem) DNA MER2_type -449 2579 2554 2277 108 3 0 chr6 49175643 49175938 -133239304 + AluSp SINE Alu 1 296 -17 3192 125 26 43 chr6 49175938 49176004 -133239238 - Tigger3(Golem) DNA MER2_type -474 2554 2501 1543 207 7 10 chr6 49176009 49176299 -133238943 - AluJb SINE Alu -23 289 1 2198 131 3 0 chr6 49176311 49176617 -133238625 - AluSx SINE Alu -5 307 1 2143 114 10 0 chr6 49176684 49176981 -133238261 + AluSx SINE Alu 5 304 -8 1139 73 0 0 chr6 49177370 49177506 -133237736 + AluSq/x SINE Alu 1 136 -176 2234 108 0 3 chr6 49177506 49177816 -133237426 + AluSx SINE Alu 1 309 0 2219 108 7 10 chr6 49177922 49178229 -133237013 + AluSx SINE Alu 1 306 -6 1573 164 13 72 chr6 49179006 49179136 -133236106 + AluJb SINE Alu 1 137 -175 185 0 40 0 chr6 49179136 49179161 -133236081 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 1573 164 13 72 chr6 49179161 49179348 -133235894 + AluJb SINE Alu 137 299 -13 2465 81 3 0 chr6 49179422 49179732 -133235510 + AluY SINE Alu 1 311 0 1315 197 37 0 chr6 49179759 49180003 -133235239 + AluJb SINE Alu 35 287 -25 2379 101 3 0 chr6 49180406 49180714 -133234528 + AluSq SINE Alu 1 309 -4 2259 104 3 0 chr6 49180847 49181145 -133234097 + AluSx SINE Alu 1 299 -13 1206 154 0 0 chr6 49181196 49181365 -133233877 + AluSx SINE Alu 1 169 -143 243 0 0 0 chr6 49181399 49181426 -133233816 + (T)n Simple_repeat Simple_repeat 1 27 0 2336 92 20 0 chr6 49181432 49181737 -133233505 + AluY SINE Alu 1 311 0 1713 155 14 28 chr6 49182929 49183213 -133232029 + AluJo SINE Alu 17 296 -16 1831 186 3 0 chr6 49183471 49183772 -133231470 - AluJb SINE Alu -10 302 1 183 149 43 43 chr6 49184668 49184715 -133230527 - MIR SINE MIR -120 142 96 1659 145 13 53 chr6 49185081 49185200 -133230042 + AluJb SINE Alu 1 123 -189 180 0 0 0 chr6 49185200 49185220 -133230022 + (TA)n Simple_repeat Simple_repeat 2 21 0 2387 95 0 20 chr6 49185220 49185525 -133229717 - AluSx SINE Alu -13 299 1 1659 145 13 53 chr6 49185525 49185707 -133229535 + AluJb SINE Alu 121 291 -21 49 0 0 0 chr6 49185779 49185828 -133229414 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr6 49185879 49185900 -133229342 + AT_rich Low_complexity Low_complexity 1 21 0 331 294 79 31 chr6 49186015 49186243 -133228999 + L1MC5 LINE L1 7706 7944 -17 24 0 0 0 chr6 49187348 49187372 -133227870 + GC_rich Low_complexity Low_complexity 1 24 0 2306 50 3 72 chr6 49188269 49188590 -133226652 + AluSx SINE Alu 1 299 -13 464 188 21 111 chr6 49189144 49189198 -133226044 + MER5B DNA MER1_type 4 61 -117 2157 93 10 0 chr6 49189198 49189489 -133225753 + AluY SINE Alu 1 294 -17 464 188 21 111 chr6 49189489 49189500 -133225742 + MER5B DNA MER1_type 61 71 -107 2354 94 0 0 chr6 49189500 49189807 -133225435 + AluSq SINE Alu 1 307 -6 464 188 21 111 chr6 49189807 49189884 -133225358 + MER5B DNA MER1_type 71 134 -44 261 42 0 125 chr6 49189884 49189932 -133225310 + AluSc SINE Alu 250 291 -8 571 166 135 0 chr6 49189933 49190141 -133225101 + L1MD3 LINE L1 7657 7985 -10 348 173 50 94 chr6 49190257 49190428 -133224814 - L1ME LINE L1 -503 5618 5321 3810 161 104 58 chr6 49190442 49191282 -133223960 + MER21A LTR ERV1 1 878 -53 6912 56 14 50 chr6 49191297 49192286 -133222956 - SVA Other Other 0 1386 433 2804 79 33 81 chr6 49192299 49192943 -133222299 - SVA Other Other -518 868 393 21 36 0 0 chr6 49192993 49193021 -133222221 + GC_rich Low_complexity Low_complexity 1 28 0 1131 206 36 5 chr6 49193344 49193567 -133221675 + MER46A DNA MER2_type 7 236 0 189 0 0 0 chr6 49193923 49193944 -133221298 + (TGG)n Simple_repeat Simple_repeat 3 23 0 1136 198 27 91 chr6 49193944 49194242 -133221000 - AluJo SINE Alu -33 279 1 537 306 44 32 chr6 49195074 49195240 -133220002 - MIR SINE MIR -2 260 88 1728 158 0 51 chr6 49195240 49195551 -133219691 + AluJb SINE Alu 1 295 -17 537 306 44 32 chr6 49195551 49195636 -133219606 - MIR SINE MIR -174 88 6 4017 178 81 20 chr6 49195871 49196254 -133218988 - MER21B LTR ERV1 0 863 505 1575 162 16 59 chr6 49196254 49196557 -133218685 + AluJo SINE Alu 1 290 -22 4017 178 81 20 chr6 49196557 49196986 -133218256 - MER21B LTR ERV1 -358 505 1 2204 112 6 19 chr6 49197024 49197336 -133217906 - AluSp SINE Alu -2 311 4 2292 104 0 7 chr6 49197592 49197900 -133217342 + AluSq SINE Alu 1 306 -7 2250 97 0 20 chr6 49199142 49199442 -133215800 + AluSg SINE Alu 1 294 -16 332 105 35 0 chr6 49199742 49199799 -133215443 + CT-rich Low_complexity Low_complexity 1 59 0 2127 133 0 16 chr6 49199808 49199833 -133215409 - AluSx SINE Alu 0 312 288 216 0 0 0 chr6 49199833 49199857 -133215385 + (CATTT)n Simple_repeat Simple_repeat 3 26 0 2127 133 0 16 chr6 49199857 49200148 -133215094 - AluSx SINE Alu -24 288 1 2552 53 0 3 chr6 49200229 49200533 -133214709 - AluY SINE Alu -8 303 1 593 293 41 38 chr6 49200717 49201007 -133214235 - L1MC/D LINE L1 -2252 5556 5266 1328 128 0 103 chr6 49201033 49201267 -133213975 - AluJo SINE Alu -16 296 87 2171 126 0 7 chr6 49201472 49201773 -133213469 + AluSg1 SINE Alu 1 299 -10 625 109 20 20 chr6 49201845 49201946 -133213296 - AluSg/x SINE Alu 0 312 212 2443 93 0 10 chr6 49202036 49202348 -133212894 + AluSx SINE Alu 1 309 -3 1865 140 4 0 chr6 49202750 49203014 -133212228 - AluSx SINE Alu -47 265 1 25 0 0 0 chr6 49203016 49203041 -133212201 + AT_rich Low_complexity Low_complexity 1 25 0 2357 61 0 32 chr6 49203797 49204110 -133211132 - AluY SINE Alu -8 303 1 694 176 0 25 chr6 49204295 49204414 -133210828 - FLAM_C SINE Alu -26 117 2 537 254 17 0 chr6 49204440 49204558 -133210684 - FLAM_A SINE Alu -13 120 1 22 35 0 0 chr6 49204575 49204604 -133210638 + AT_rich Low_complexity Low_complexity 1 29 0 1341 201 67 67 chr6 49204605 49204995 -133210247 + L1M4 LINE L1 4502 4894 -1252 2358 123 0 0 chr6 49204995 49205303 -133209939 + AluSc SINE Alu 1 308 -1 1341 201 67 67 chr6 49205303 49205316 -133209926 + L1M4 LINE L1 4893 4905 -1241 577 261 110 60 chr6 49205787 49205836 -133209406 - MIR SINE MIR -31 231 186 1839 107 118 0 chr6 49205836 49206108 -133209134 + AluSx SINE Alu 1 304 -8 577 261 110 60 chr6 49206108 49206276 -133208966 - MIR SINE MIR -76 186 3 1250 144 8 116 chr6 49206282 49206532 -133208710 + AluJb SINE Alu 1 223 -89 183 100 0 0 chr6 49206548 49206578 -133208664 + (T)n Simple_repeat Simple_repeat 1 30 0 1857 88 0 25 chr6 49206592 49206830 -133208412 - AluSg SINE Alu -78 232 1 1837 118 20 104 chr6 49206861 49207208 -133208034 + AluYb8 SINE Alu 1 318 0 475 164 0 0 chr6 49207353 49207426 -133207816 + AluS SINE Alu 221 293 -16 2554 72 0 0 chr6 49207598 49207902 -133207340 + AluY SINE Alu 2 305 -6 2365 101 3 0 chr6 49208502 49208810 -133206432 - AluSx SINE Alu -3 309 1 24 0 0 0 chr6 49209037 49209061 -133206181 + AT_rich Low_complexity Low_complexity 1 24 0 1361 188 47 0 chr6 49209359 49209614 -133205628 + AluJb SINE Alu 34 300 -12 2247 106 3 28 chr6 49209740 49210060 -133205182 + AluSx SINE Alu 1 312 0 988 150 5 82 chr6 49210062 49210282 -133204960 - MER2 DNA MER2_type -140 205 3 2520 82 0 0 chr6 49210378 49210684 -133204558 - AluSx SINE Alu -6 306 1 69 24 0 0 chr6 49211140 49211223 -133204019 + AT_rich Low_complexity Low_complexity 1 83 0 2397 100 3 0 chr6 49211272 49211573 -133203669 + AluSp SINE Alu 1 302 -11 1704 114 41 4 chr6 49211581 49211826 -133203416 + AluSc SINE Alu 39 292 -17 2308 125 0 0 chr6 49212649 49212961 -133202281 - AluSq SINE Alu -1 312 1 866 163 0 7 chr6 49213036 49213171 -133202071 + AluJo SINE Alu 1 134 -178 2447 93 3 0 chr6 49213172 49213482 -133201760 + AluSq SINE Alu 1 311 -2 2132 130 3 0 chr6 49214070 49214363 -133200879 - AluSx SINE Alu -18 294 1 2015 141 10 13 chr6 49214391 49214567 -133200675 - AluJo SINE Alu -7 305 129 1595 163 4 16 chr6 49214567 49214825 -133200417 - AluJb SINE Alu -57 255 1 2015 141 10 13 chr6 49214825 49214954 -133200288 - AluJo SINE Alu -183 129 1 1547 139 4 4 chr6 49216835 49217072 -133198170 - AluJo SINE Alu -2 310 74 2137 117 3 37 chr6 49217095 49217419 -133197823 - AluSq SINE Alu 0 313 1 839 251 82 19 chr6 49217445 49217760 -133197482 - L1MA9 LINE L1 -38 6274 5940 2275 123 0 0 chr6 49217822 49218123 -133197119 - AluSx SINE Alu -10 302 2 3665 136 100 53 chr6 49218136 49218481 -133196761 - L1MB8 LINE L1 0 6178 5851 2316 114 0 0 chr6 49218481 49218788 -133196454 - AluSc SINE Alu -2 307 1 3665 136 100 53 chr6 49218788 49219259 -133195983 - L1MB8 LINE L1 -327 5851 5299 2154 92 55 0 chr6 49219259 49219551 -133195691 + AluSq SINE Alu 1 308 -5 3665 136 100 53 chr6 49219551 49219685 -133195557 - L1MB8 LINE L1 -879 5299 5173 742 220 11 51 chr6 49219911 49220088 -133195154 - FRAM SINE Alu -6 170 1 906 301 92 20 chr6 49220168 49220721 -133194521 + L2 LINE L2 2699 3292 -21 2355 103 0 10 chr6 49221449 49221760 -133193482 - AluSx SINE Alu -4 308 1 586 70 0 0 chr6 49222341 49222412 -133192830 + AluS SINE Alu 2 72 -241 2344 95 0 0 chr6 49223169 49223491 -133191751 + AluSq SINE Alu 1 322 0 2548 70 0 0 chr6 49223742 49224042 -133191200 - AluSq SINE Alu -13 300 1 2363 84 7 0 chr6 49224196 49224493 -133190749 - AluSg SINE Alu -11 299 1 246 231 137 13 chr6 49224776 49224893 -133190349 + MER5A DNA MER1_type 2 189 0 251 285 145 20 chr6 49226195 49226354 -133188888 + MIR3 SINE MIR 3 187 -62 1966 144 14 0 chr6 49226381 49226672 -133188570 + AluSx SINE Alu 1 295 -17 2139 107 30 10 chr6 49226676 49226975 -133188267 + AluSg SINE Alu 1 305 -5 2276 117 0 3 chr6 49227060 49227367 -133187875 - AluSc SINE Alu -3 306 1 2419 34 41 14 chr6 49227402 49227697 -133187545 + AluY SINE Alu 1 303 -8 1914 137 23 7 chr6 49227707 49228007 -133187235 + AluSg SINE Alu 1 305 -5 2043 123 14 0 chr6 49228304 49228588 -133186654 + AluSx SINE Alu 2 289 -23 336 247 54 11 chr6 49228622 49228715 -133186527 + MER5A DNA MER1_type 13 109 -80 1982 140 10 3 chr6 49228740 49229032 -133186210 + AluSx SINE Alu 1 294 -18 2164 85 35 0 chr6 49229043 49229325 -133185917 + AluSc SINE Alu 1 292 -17 2271 105 7 0 chr6 49229552 49229847 -133185395 - AluSc SINE Alu -12 297 1 2188 110 3 0 chr6 49230031 49230321 -133184921 - AluSx SINE Alu -16 296 6 21 0 0 0 chr6 49230336 49230357 -133184885 + AT_rich Low_complexity Low_complexity 1 21 0 1732 180 43 3 chr6 49230490 49230790 -133184452 + AluJb SINE Alu 1 312 0 192 250 104 0 chr6 49230862 49230910 -133184332 + L2 LINE L2 3261 3313 0 282 125 0 0 chr6 49231916 49231964 -133183278 + (TA)n Simple_repeat Simple_repeat 2 49 0 2125 106 7 3 chr6 49234504 49234812 -133180430 + AluSx SINE Alu 1 309 0 526 93 4 1 chr6 49238026 49238254 -133176988 + AluSp SINE Alu 52 313 0 721 148 126 93 chr6 49239362 49239477 -133175765 + MER5A DNA MER1_type 1 127 -62 2166 78 18 7 chr6 49239477 49239792 -133175450 + AluSq SINE Alu 1 318 0 721 148 126 93 chr6 49239792 49239858 -133175384 + MER5A DNA MER1_type 127 189 0 315 0 0 0 chr6 49239866 49239901 -133175341 + (TG)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr6 49240598 49240621 -133174621 + (CCG)n Simple_repeat Simple_repeat 2 24 0 2330 80 0 10 chr6 49241853 49242155 -133173087 + AluSx SINE Alu 1 299 -13 1293 145 0 0 chr6 49242155 49242334 -133172908 + AluSg/x SINE Alu 134 312 0 1850 162 10 16 chr6 49242872 49243181 -133172061 - AluJo SINE Alu -5 307 1 218 32 32 0 chr6 49243187 49243218 -133172024 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 297 156 0 29 chr6 49243218 49243284 -133171958 + AluJ/FLAM SINE Alu 28 68 -234 2325 84 10 3 chr6 49243287 49243595 -133171647 - AluSp SINE Alu -3 310 1 1830 177 17 7 chr6 49243654 49243954 -133171288 - AluJo SINE Alu -9 303 1 194 200 33 17 chr6 49244004 49244064 -133171178 + L2 LINE L2 1986 2046 -1268 676 133 0 199 chr6 49244065 49244134 -133171108 - FLAM_C SINE Alu -169 133 114 2378 102 0 3 chr6 49244134 49244447 -133170795 + AluSq SINE Alu 1 312 -1 676 133 0 199 chr6 49244447 49244543 -133170699 - FLAM_C SINE Alu -188 114 1 2260 114 7 0 chr6 49244568 49244867 -133170375 - AluSp SINE Alu -12 301 1 188 245 0 0 chr6 49244906 49244955 -133170287 + L2 LINE L2 1986 2034 -1280 185 0 0 39 chr6 49244955 49244981 -133170261 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 732 212 0 0 chr6 49244982 49245100 -133170142 - FLAM_C SINE Alu -24 119 2 1021 169 6 0 chr6 49245112 49245284 -133169958 - AluJb SINE Alu -19 293 121 232 247 158 63 chr6 49245286 49245476 -133169766 + L2 LINE L2 2043 2250 -1064 1309 165 8 43 chr6 49245603 49245858 -133169384 - AluJo SINE Alu 0 312 67 865 291 26 60 chr6 49245867 49245945 -133169297 + L2 LINE L2 2396 2475 -839 2481 97 0 0 chr6 49245945 49246254 -133168988 - AluSg SINE Alu -1 309 1 865 291 26 60 chr6 49246254 49246643 -133168599 + L2 LINE L2 2475 2847 -467 432 306 93 58 chr6 49246712 49247003 -133168239 + L2 LINE L2 2972 3272 0 1403 87 0 0 chr6 49248279 49248452 -133166790 - AluSg/x SINE Alu -18 294 122 2284 105 0 7 chr6 49248458 49248762 -133166480 - AluSq SINE Alu -11 302 1 339 229 134 62 chr6 49248762 49248811 -133166431 - HAL1 LINE L1 -1461 1046 1002 2245 104 0 55 chr6 49248811 49248988 -133166254 - AluSx SINE Alu -2 310 125 2288 111 0 0 chr6 49248988 49249294 -133165948 - AluSx SINE Alu -6 306 1 2183 98 10 10 chr6 49249296 49249593 -133165649 - AluSx SINE Alu -15 297 1 2245 104 0 55 chr6 49249593 49249740 -133165502 - AluSx SINE Alu -188 124 1 339 229 134 62 chr6 49249740 49249910 -133165332 - HAL1 LINE L1 -1505 1002 798 2627 56 0 0 chr6 49249910 49250212 -133165030 + AluY SINE Alu 1 302 -9 339 229 134 62 chr6 49250212 49250283 -133164959 - HAL1 LINE L1 -1709 798 734 275 268 106 47 chr6 49250328 49250533 -133164709 - HAL1 LINE L1 -2112 395 173 2490 86 0 0 chr6 49250533 49250834 -133164408 - AluY SINE Alu -10 301 1 275 268 106 47 chr6 49250834 49250863 -133164379 - HAL1 LINE L1 -2334 173 147 322 324 82 35 chr6 49250872 49251042 -133164200 - HAL1 LINE L1 -2327 180 3 21 57 0 0 chr6 49252306 49252341 -133162901 + AT_rich Low_complexity Low_complexity 1 35 0 2372 113 3 0 chr6 49252425 49252734 -133162508 - AluSx SINE Alu -2 310 1 244 310 40 30 chr6 49252782 49252882 -133162360 - MIR SINE MIR -89 119 19 221 240 21 52 chr6 49253156 49253203 -133162039 + (TATATG)n Simple_repeat Simple_repeat 3 47 -48 2128 92 20 17 chr6 49253203 49253334 -133161908 + AluSx SINE Alu 3 132 -180 2281 113 3 3 chr6 49253334 49253643 -133161599 + AluSg SINE Alu 1 309 -1 2128 92 20 17 chr6 49253643 49253806 -133161436 + AluSx SINE Alu 132 298 -14 221 240 21 52 chr6 49253806 49253854 -133161388 + (TATATG)n Simple_repeat Simple_repeat 47 95 0 327 241 231 0 chr6 49253882 49253990 -133161252 - MIR SINE MIR -40 222 90 1790 192 40 23 chr6 49254226 49254675 -133160567 - LTR2B LTR ERV1 0 490 1 1478 108 20 0 chr6 49254896 49255100 -133160142 - AluSg/x SINE Alu -24 286 79 1913 142 7 7 chr6 49255131 49255413 -133159829 + AluJb SINE Alu 3 284 -28 2183 99 0 84 chr6 49257346 49257521 -133157721 - AluSx SINE Alu -8 304 116 207 0 0 0 chr6 49257521 49257544 -133157698 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2259 44 33 11 chr6 49257546 49257819 -133157423 - AluY SINE Alu -31 280 2 2183 99 0 84 chr6 49257819 49257972 -133157270 - AluSx SINE Alu -197 115 1 214 196 176 0 chr6 49257972 49258023 -133157219 - L3 LINE CR1 -109 1468 1409 1142 137 33 47 chr6 49258025 49258076 -133157166 + AluJo SINE Alu 85 135 -177 2223 102 23 0 chr6 49258076 49258380 -133156862 + AluY SINE Alu 1 311 0 1142 137 33 47 chr6 49258380 49258565 -133156677 + AluJo SINE Alu 135 312 0 224 371 145 11 chr6 49258795 49259153 -133156089 - L2 LINE L2 -682 2632 2227 1371 233 106 55 chr6 49259153 49259383 -133155859 - L2 LINE L2 -1 3312 3095 2343 97 3 0 chr6 49259383 49259682 -133155560 + AluSp SINE Alu 1 300 -13 1371 233 106 55 chr6 49259682 49260301 -133154941 - L2 LINE L2 -218 3095 2414 213 272 22 11 chr6 49260341 49260433 -133154809 - L2 LINE L2 -1410 1904 1812 2122 100 50 7 chr6 49260572 49260872 -133154370 - AluSq SINE Alu 0 313 1 2074 108 36 0 chr6 49261331 49261609 -133153633 - AluSx SINE Alu -24 288 1 2529 84 3 0 chr6 49262020 49262329 -133152913 + AluY SINE Alu 1 310 -1 706 177 0 8 chr6 49262354 49262478 -133152764 - FLAM_A SINE Alu -8 134 12 365 242 106 50 chr6 49262523 49262684 -133152558 - MIR SINE MIR -15 247 78 2394 91 3 0 chr6 49262940 49263238 -133152004 - AluSq SINE Alu -8 305 7 252 243 86 0 chr6 49263311 49263381 -133151861 + MER5A DNA MER1_type 9 84 -105 2621 63 0 0 chr6 49263420 49263723 -133151519 + AluY SINE Alu 1 303 -8 622 263 44 75 chr6 49263724 49263822 -133151420 - L1MC4a LINE L1 -1892 5916 5816 2381 100 0 0 chr6 49263822 49264121 -133151121 - AluSx SINE Alu -13 299 1 622 263 44 75 chr6 49264121 49264207 -133151035 - L1MC4a LINE L1 -1992 5816 5729 2059 143 3 7 chr6 49264207 49264515 -133150727 - AluJo SINE Alu -5 307 1 622 263 44 75 chr6 49264515 49264565 -133150677 - L1MC4a LINE L1 -2079 5729 5679 2395 74 14 3 chr6 49264565 49264861 -133150381 + AluSg SINE Alu 1 299 -11 622 263 44 75 chr6 49264861 49264944 -133150298 - L1MC4a LINE L1 -2129 5679 5607 2376 90 3 0 chr6 49265097 49265387 -133149855 - AluSp SINE Alu -22 291 1 247 200 63 74 chr6 49265388 49265483 -133149759 + MIR SINE MIR 114 207 -55 661 249 57 15 chr6 49265702 49265803 -133149439 + L1ME4a LINE L1 5842 5937 -184 1865 155 7 45 chr6 49265803 49265936 -133149306 + AluJb SINE Alu 1 138 -174 2239 138 0 0 chr6 49265936 49266248 -133148994 + AluSx SINE Alu 1 312 0 1865 155 7 45 chr6 49266248 49266423 -133148819 + AluJb SINE Alu 138 297 -15 661 249 57 15 chr6 49266423 49266586 -133148656 + L1ME4a LINE L1 5937 6117 -4 592 89 20 20 chr6 49267384 49267485 -133147757 + (TTCC)n Simple_repeat Simple_repeat 1 101 0 2243 112 7 0 chr6 49267486 49267781 -133147461 - AluSq SINE Alu -16 297 1 587 183 153 40 chr6 49268722 49268924 -133146318 - MIR SINE MIR 0 262 38 724 240 21 6 chr6 49269048 49269232 -133146010 + MIR SINE MIR 5 190 -40 539 182 0 0 chr6 49269234 49269322 -133145920 + 5S rRNA rRNA 3 90 -31 322 156 0 31 chr6 49269322 49269386 -133145856 + MIR SINE MIR 183 244 -18 2407 102 0 6 chr6 49269403 49269717 -133145525 + AluSx SINE Alu 1 312 0 1213 152 110 0 chr6 49269728 49269965 -133145277 - Tigger1 DNA MER2_type -4 2414 2152 2093 85 7 22 chr6 49269965 49270237 -133145005 - AluY SINE Alu -41 270 3 1153 104 0 0 chr6 49270238 49270382 -133144860 - AluSc SINE Alu -165 144 1 1639 75 0 17 chr6 49270382 49270621 -133144621 - Tigger1 DNA MER2_type -506 1912 1678 1209 122 0 58 chr6 49270621 49270782 -133144460 - AluSq SINE Alu -16 297 147 2530 54 0 0 chr6 49270782 49271077 -133144165 - AluY SINE Alu -16 295 1 1209 122 0 58 chr6 49271077 49271104 -133144138 - AluSq SINE Alu -166 147 120 2144 118 3 13 chr6 49271117 49271430 -133143812 - AluSx SINE Alu -2 310 1 2149 133 10 0 chr6 49271435 49271736 -133143506 - AluSx SINE Alu -8 304 1 9813 99 25 78 chr6 49271736 49271845 -133143397 - Tigger1 DNA MER2_type -728 1690 1577 2182 124 0 0 chr6 49271845 49272158 -133143084 - AluY SINE Alu 0 311 1 9813 99 25 78 chr6 49272158 49272774 -133142468 - Tigger1 DNA MER2_type -841 1577 930 2517 93 0 0 chr6 49272774 49273084 -133142158 + AluSx SINE Alu 1 310 -2 9813 99 25 78 chr6 49273084 49273300 -133141942 - Tigger1 DNA MER2_type -1488 930 704 1669 179 33 0 chr6 49273300 49273574 -133141668 - AluJo SINE Alu -29 283 1 9813 99 25 78 chr6 49273574 49273762 -133141480 - Tigger1 DNA MER2_type -1714 704 508 2605 57 0 3 chr6 49273762 49274062 -133141180 - AluY SINE Alu -12 299 1 9813 99 25 78 chr6 49274062 49274189 -133141053 - Tigger1 DNA MER2_type -1910 508 376 1681 178 26 30 chr6 49274189 49274493 -133140749 - AluJo SINE Alu -9 303 1 9813 99 25 78 chr6 49274493 49274608 -133140634 - Tigger1 DNA MER2_type -2042 376 256 2254 134 0 0 chr6 49274608 49274914 -133140328 - AluSx SINE Alu -6 306 1 9813 99 25 78 chr6 49274914 49275143 -133140099 - Tigger1 DNA MER2_type -2162 256 184 2156 125 10 0 chr6 49275143 49275438 -133139804 + AluSx SINE Alu 1 298 -14 9813 99 25 78 chr6 49275438 49275591 -133139651 - Tigger1 DNA MER2_type -2234 184 24 225 0 0 0 chr6 49275599 49275624 -133139618 + (ATG)n Simple_repeat Simple_repeat 2 26 0 1029 145 35 12 chr6 49275639 49275811 -133139431 - AluSg/x SINE Alu -19 293 118 492 252 50 17 chr6 49276753 49276872 -133138370 + FRAM SINE Alu 1 123 -53 2108 133 0 31 chr6 49277199 49277521 -133137721 - AluJb SINE Alu 0 312 1 1808 98 122 0 chr6 49278185 49278439 -133136803 - AluSx SINE Alu -27 285 1 2025 150 3 3 chr6 49281715 49282015 -133133227 + AluJo SINE Alu 1 300 -12 2301 87 0 0 chr6 49284382 49284668 -133130574 - AluSx SINE Alu -11 301 16 231 130 43 0 chr6 49285731 49285777 -133129465 - MADE1 DNA Mariner -32 48 1 402 267 69 0 chr6 49286094 49286210 -133129032 - MER91C DNA MER1_type -3 137 14 1832 151 31 20 chr6 49287254 49287546 -133127696 - AluJb SINE Alu -17 295 1 401 74 0 0 chr6 49288013 49288067 -133127175 + FLAM SINE Alu 59 112 -21 876 227 52 32 chr6 49289003 49289254 -133125988 + MIR SINE MIR 7 262 0 374 181 96 0 chr6 49289511 49289594 -133125648 - MER5B DNA MER1_type 0 178 88 500 92 0 13 chr6 49289703 49289779 -133125463 + MER5B DNA MER1_type 104 178 0 1098 157 73 0 chr6 49290528 49290732 -133124510 + MER20 DNA MER1_type 1 219 0 311 299 71 24 chr6 49291267 49291394 -133123848 - MIR SINE MIR -6 256 124 1795 170 19 16 chr6 49293415 49293726 -133121516 + AluJb SINE Alu 1 312 0 186 263 95 42 chr6 49295140 49295235 -133120007 - L2 LINE L2 -11 3261 3162 442 196 122 9 chr6 49295419 49295545 -133119697 + FLAM_A SINE Alu 19 142 0 27 49 0 0 chr6 49296234 49296275 -133118967 + AT_rich Low_complexity Low_complexity 1 41 0 495 308 36 25 chr6 49296465 49296674 -133118568 + MIR SINE MIR 35 245 -17 1087 147 78 5 chr6 49296758 49296962 -133118280 - MER20 DNA MER1_type 0 219 1 672 200 0 30 chr6 49297363 49297498 -133117744 - FLAM_C SINE Alu -1 132 2 273 330 117 15 chr6 49297822 49298086 -133117156 + L2 LINE L2 1725 2015 -1299 631 330 118 21 chr6 49299621 49300003 -133115239 + L2 LINE L2 2854 3272 0 2328 82 7 0 chr6 49300073 49300389 -133114853 + AluSq SINE Alu 1 318 0 244 181 143 9 chr6 49301206 49301311 -133113931 - L1ME4a LINE L1 -11 6110 5992 2284 104 16 10 chr6 49301483 49301792 -133113450 + AluSx SINE Alu 1 311 -1 725 233 44 40 chr6 49301802 49302253 -133112989 - L1ME3A LINE L1 -32 6138 5567 1950 169 0 3 chr6 49302270 49302565 -133112677 - AluJb SINE Alu -18 294 1 854 219 20 161 chr6 49302577 49302802 -133112440 - L1ME3A LINE L1 -578 5592 5337 2078 134 0 0 chr6 49302802 49303120 -133112122 - AluSx SINE Alu 0 318 1 854 219 20 161 chr6 49303120 49303233 -133112009 - L1ME3A LINE L1 -833 5337 5332 1540 196 6 52 chr6 49303233 49303412 -133111830 - AluJb SINE Alu 0 312 153 2325 104 0 3 chr6 49303412 49303711 -133111531 - AluSx SINE Alu -14 298 1 1540 196 6 52 chr6 49303711 49303858 -133111384 - AluJb SINE Alu -159 153 1 854 219 20 161 chr6 49303858 49304063 -133111179 - L1ME3A LINE L1 -838 5332 5100 1870 156 10 27 chr6 49304081 49304382 -133110860 + AluJb SINE Alu 1 296 -16 684 248 0 6 chr6 49304389 49304550 -133110692 + FRAM SINE Alu 13 172 -4 459 253 24 24 chr6 49304563 49304729 -133110513 - L1ME3A LINE L1 -1072 5074 4909 1318 116 0 0 chr6 49304742 49304914 -133110328 - AluSq SINE Alu -10 303 132 447 19 0 0 chr6 49305007 49305059 -133110183 + (CA)n Simple_repeat Simple_repeat 1 52 0 198 0 0 0 chr6 49305058 49305080 -133110162 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 967 161 0 0 chr6 49305085 49305228 -133110014 - AluJb SINE Alu -14 298 156 2442 90 0 0 chr6 49305312 49305611 -133109631 - AluSq SINE Alu -14 299 1 2370 89 0 25 chr6 49305639 49305955 -133109287 - AluSx SINE Alu -4 308 1 643 228 55 0 chr6 49308303 49308448 -133106794 + FRAM SINE Alu 2 154 -12 22 0 0 0 chr6 49308448 49308470 -133106772 + AT_rich Low_complexity Low_complexity 1 22 0 2239 134 0 0 chr6 49308477 49308775 -133106467 + AluSx SINE Alu 1 298 -14 206 167 0 0 chr6 49308849 49308891 -133106351 + MIR SINE MIR 98 140 -68 2318 107 0 7 chr6 49309164 49309464 -133105778 - AluSg SINE Alu -12 298 1 218 0 94 0 chr6 49309709 49309741 -133105501 + T-rich Low_complexity Low_complexity 5 39 0 285 75 0 0 chr6 49310008 49310048 -133105194 + (TG)n Simple_repeat Simple_repeat 1 40 0 253 291 38 0 chr6 49310730 49310809 -133104433 - MIR SINE MIR -147 115 34 202 307 10 40 chr6 49310952 49311053 -133104189 + G-rich Low_complexity Low_complexity 1 98 0 2154 136 65 63 chr6 49311648 49311686 -133103556 - L1MB3 LINE L1 -7 6176 6140 2339 102 0 3 chr6 49311686 49311981 -133103261 - AluSp SINE Alu -19 294 1 2154 136 65 63 chr6 49311981 49312034 -133103208 - L1MB3 LINE L1 -43 6140 6089 2246 87 3 14 chr6 49312034 49312170 -133103072 + AluSx SINE Alu 1 137 -180 2247 113 0 0 chr6 49312170 49312462 -133102780 + AluSc SINE Alu 1 292 -17 2246 87 3 14 chr6 49312462 49312645 -133102597 + AluSx SINE Alu 137 317 0 2154 136 65 63 chr6 49312645 49312919 -133102323 - L1MB3 LINE L1 -94 6089 5805 2031 129 7 16 chr6 49312919 49313222 -133102020 - AluJb SINE Alu -12 300 1 2154 136 65 63 chr6 49313222 49313345 -133101897 - L1MB3 LINE L1 -378 5805 5684 481 226 159 6 chr6 49313379 49313559 -133101683 - MIR SINE MIR -14 248 41 584 211 33 67 chr6 49313738 49313918 -133101324 + MER5B DNA MER1_type 5 178 0 402 69 0 0 chr6 49314099 49314157 -133101085 + (TG)n Simple_repeat Simple_repeat 2 59 0 629 257 11 17 chr6 49314855 49315030 -133100212 - MER5B DNA MER1_type -3 175 2 800 201 6 6 chr6 49315089 49315253 -133099989 + MIR SINE MIR 99 262 0 186 245 38 38 chr6 49315352 49315405 -133099837 - L2 LINE L2 -15 3257 3205 196 321 83 24 chr6 49315437 49315521 -133099721 - L2 LINE L2 -60 3212 3124 2576 75 0 0 chr6 49315877 49316185 -133099057 - AluSg SINE Alu -2 308 1 2334 112 0 13 chr6 49316487 49316801 -133098441 - AluSx SINE Alu -2 310 1 414 123 0 0 chr6 49316931 49316996 -133098246 + Alu SINE Alu 240 304 -8 840 146 174 0 chr6 49317108 49317252 -133097990 - AluSc SINE Alu -10 299 131 338 224 0 0 chr6 49318181 49318248 -133096994 - L1MC/D LINE L1 -1991 5817 5751 235 236 18 0 chr6 49318623 49318678 -133096564 - MIR3 SINE MIR -11 197 142 395 263 273 25 chr6 49318685 49318883 -133096359 - MIR SINE MIR 0 262 16 248 229 217 0 chr6 49318893 49318976 -133096266 - MIR SINE MIR -59 149 49 2421 90 0 0 chr6 49319677 49319977 -133095265 - AluSq SINE Alu -10 303 4 279 0 0 0 chr6 49319978 49320009 -133095233 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1910 127 4 0 chr6 49320009 49320269 -133094973 - AluSx SINE Alu -27 285 25 205 273 36 0 chr6 49320380 49320435 -133094807 + L2 LINE L2 3216 3272 0 243 188 0 0 chr6 49320516 49320564 -133094678 + CT-rich Low_complexity Low_complexity 3 50 0 690 156 15 7 chr6 49320608 49320743 -133094499 - L1MB8 LINE L1 -1 6177 6042 193 377 50 19 chr6 49320764 49320923 -133094319 + L2 LINE L2 1654 1817 -1497 471 239 163 16 chr6 49320952 49321136 -133094106 - MIR SINE MIR -29 233 23 2389 100 0 3 chr6 49321565 49321865 -133093377 - AluSq SINE Alu -14 299 1 269 218 13 0 chr6 49321933 49322011 -133093231 + GA-rich Low_complexity Low_complexity 3 81 0 245 369 69 15 chr6 49322193 49322323 -133092919 + L2 LINE L2 3136 3272 0 1820 244 95 23 chr6 49322375 49323359 -133091883 - L2 LINE L2 -2 3311 2268 291 279 79 36 chr6 49323471 49323532 -133091710 + MIR SINE MIR 112 169 -93 408 20 0 0 chr6 49323532 49323581 -133091661 + (TG)n Simple_repeat Simple_repeat 2 50 0 291 279 79 36 chr6 49323581 49323604 -133091638 + MIR SINE MIR 169 190 -72 2045 139 4 0 chr6 49323604 49323927 -133091315 + AluSx SINE Alu 1 324 0 291 279 79 36 chr6 49323927 49323980 -133091262 + MIR SINE MIR 190 257 -5 2321 114 0 10 chr6 49324448 49324583 -133090659 + AluSq SINE Alu 1 136 -177 2870 13 3 0 chr6 49324583 49324889 -133090353 + AluYb8 SINE Alu 1 307 -11 2321 114 0 10 chr6 49324889 49325059 -133090183 + AluSq SINE Alu 136 303 -10 963 147 12 47 chr6 49325059 49325229 -133090013 + AluJb SINE Alu 137 300 -12 387 369 28 6 chr6 49325725 49325901 -133089341 - MIR SINE MIR -77 185 6 588 306 134 5 chr6 49326580 49326789 -133088453 + MIR SINE MIR 2 237 -25 433 306 64 17 chr6 49326834 49327007 -133088235 - MIR SINE MIR -73 189 9 285 98 0 0 chr6 49327014 49327055 -133088187 + (TG)n Simple_repeat Simple_repeat 2 42 0 989 179 191 60 chr6 49327955 49328368 -133086874 + MLT1C LTR MaLR 1 467 0 233 272 193 0 chr6 49328450 49328564 -133086678 - MIR SINE MIR 0 262 127 247 161 0 69 chr6 49328935 49329022 -133086220 + (CACCAT)n Simple_repeat Simple_repeat 3 83 0 755 318 16 12 chr6 49330368 49330613 -133084629 - MIR SINE MIR 0 262 17 362 247 78 54 chr6 49330698 49330864 -133084378 + MIR3 SINE MIR 21 190 -18 433 212 80 0 chr6 49331334 49331447 -133083795 - L2 LINE L2 -5 3267 3146 399 309 76 67 chr6 49332010 49332168 -133083074 - L2 LINE L2 0 3313 3158 2442 87 0 3 chr6 49332168 49332468 -133082774 + AluSg SINE Alu 1 299 -11 399 309 76 67 chr6 49332468 49332623 -133082619 - L2 LINE L2 -155 3158 2997 1683 213 73 35 chr6 49332629 49333080 -133082162 - MLT1J LTR MaLR -7 504 37 471 290 97 29 chr6 49333145 49333486 -133081756 - L2 LINE L2 -823 2491 2128 230 261 0 112 chr6 49333764 49333898 -133081344 + LTR67 LTR ERVL 418 536 -21 909 278 111 60 chr6 49334143 49334664 -133080578 - MLT1K LTR MaLR -15 573 26 306 296 181 31 chr6 49334861 49335087 -133080155 + MIR SINE MIR 2 261 -1 461 157 11 11 chr6 49335766 49335855 -133079387 - MER103 DNA DNA -67 99 11 227 311 40 0 chr6 49336386 49336460 -133078782 - MIR SINE MIR -68 140 64 217 341 63 8 chr6 49337202 49337328 -133077914 + MIR SINE MIR 30 162 -100 1777 135 0 4 chr6 49337907 49338151 -133077091 + AluJb SINE Alu 34 276 -36 357 282 215 27 chr6 49338185 49338334 -133076908 - MIR SINE MIR 0 262 86 342 245 132 0 chr6 49338476 49338582 -133076660 + L2 LINE L2 3192 3311 -2 312 225 58 42 chr6 49338590 49338702 -133076540 + L2 LINE L2 3146 3262 -10 228 67 0 0 chr6 49338702 49338732 -133076510 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 223 182 0 0 chr6 49339006 49339050 -133076192 + L2 LINE L2 3229 3272 0 249 33 0 0 chr6 49339141 49339171 -133076071 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1796 137 63 19 chr6 49339420 49339720 -133075522 + AluJb SINE Alu 2 313 0 678 235 73 11 chr6 49339720 49339899 -133075343 - MIR SINE MIR -2 260 71 260 297 30 59 chr6 49340713 49341026 -133074216 - HAL1b LINE L1 -2 6119 1187 7552 217 46 17 chr6 49341189 49341315 -133073927 + L1M4 LINE L1 1978 2099 -4283 1741 161 53 7 chr6 49341315 49341428 -133073814 + AluJb SINE Alu 1 107 -205 243 0 0 0 chr6 49341428 49341455 -133073787 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1741 161 53 7 chr6 49341455 49341626 -133073616 + AluJb SINE Alu 107 298 -14 2229 130 10 0 chr6 49341629 49341937 -133073305 + AluSx SINE Alu 1 311 -1 7552 217 46 17 chr6 49341937 49344222 -133071020 + L1M4 LINE L1 2100 4457 -1925 803 165 8 0 chr6 49344276 49344397 -133070845 + FLAM_C SINE Alu 1 122 -21 636 157 0 9 chr6 49344406 49344521 -133070721 + L1M4 LINE L1 5286 5399 -983 405 93 13 13 chr6 49344521 49344596 -133070646 + L1MB4 LINE L1 6106 6180 0 546 262 61 24 chr6 49344892 49345056 -133070186 + MIR SINE MIR 93 262 0 198 171 0 0 chr6 49345692 49345733 -133069509 + C-rich Low_complexity Low_complexity 2 42 0 201 306 83 28 chr6 49345882 49345990 -133069252 - MIR3 SINE MIR -84 124 11 2320 98 0 10 chr6 49346574 49346870 -133068372 - AluSx SINE Alu -19 293 1 1699 198 30 25 chr6 49346952 49347320 -133067922 + MLT1A2 LTR MaLR 5 374 0 211 279 272 6 chr6 49347864 49348022 -133067220 + L2 LINE L2 3073 3272 0 323 85 0 0 chr6 49348578 49348625 -133066617 - MER53 DNA DNA -1 188 142 219 139 28 0 chr6 49349287 49349323 -133065919 + GA-rich Low_complexity Low_complexity 1 37 0 753 117 22 22 chr6 49349483 49349663 -133065579 + (TG)n Simple_repeat Simple_repeat 1 180 0 842 98 34 9 chr6 49349708 49350061 -133065181 + (TG)n Simple_repeat Simple_repeat 1 540 0 333 222 0 0 chr6 49350516 49350579 -133064663 - Charlie8 DNA MER1_type -2352 65 3 594 238 161 16 chr6 49350638 49350831 -133064411 + MIR SINE MIR 31 251 -11 293 377 19 13 chr6 49350860 49351019 -133064223 + L2 LINE L2 3016 3175 -97 289 277 24 0 chr6 49351047 49351130 -133064112 - L2 LINE L2 -2 3270 3186 394 226 32 71 chr6 49353146 49353301 -133061941 - MER104 DNA Tc2 -21 159 11 270 238 0 0 chr6 49353435 49353498 -133061744 + MIR SINE MIR 200 262 0 195 100 0 0 chr6 49353775 49353805 -133061437 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 185 264 0 19 chr6 49353805 49353858 -133061384 - L2 LINE L2 -7 3265 3214 227 192 39 0 chr6 49355174 49355226 -133060016 - MER45 DNA AcHobo 0 1581 1528 200 163 23 0 chr6 49355801 49355844 -133059398 + (TG)n Simple_repeat Simple_repeat 1 44 0 198 0 0 0 chr6 49357249 49357271 -133057971 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 378 107 0 0 chr6 49357589 49357645 -133057597 + (TG)n Simple_repeat Simple_repeat 1 56 0 766 104 0 184 chr6 49358818 49358981 -133056261 + FLAM_C SINE Alu 1 133 0 296 361 98 22 chr6 49359725 49360135 -133055107 - L2 LINE L2 -542 2772 2332 248 302 23 0 chr6 49360245 49360331 -133054911 - MARNA DNA Mariner -90 496 409 232 306 105 16 chr6 49360331 49360455 -133054787 - L2 LINE L2 -19 3294 3160 867 165 18 12 chr6 49360492 49360656 -133054586 - MLT1E3 LTR MaLR -2 622 458 1504 177 0 0 chr6 49360658 49360906 -133054336 - AluJo SINE Alu -7 305 58 453 169 192 31 chr6 49360952 49361082 -133054160 - MLT1E1 LTR MaLR -503 151 1 844 204 71 173 chr6 49361082 49361460 -133053782 + L2 LINE L2 2763 3178 -135 2177 117 0 0 chr6 49361460 49361769 -133053473 + AluSx SINE Alu 2 310 -2 844 204 71 173 chr6 49361769 49361806 -133053436 + L2 LINE L2 3178 3217 -96 2140 122 0 0 chr6 49361806 49362101 -133053141 - AluSx SINE Alu -17 295 1 844 204 71 173 chr6 49362101 49362267 -133052975 + L2 LINE L2 3217 3311 -2 1850 232 35 60 chr6 49362398 49362459 -133052783 + L1M4 LINE L1 3090 3151 -2995 2026 129 0 3 chr6 49362459 49362754 -133052488 + AluSx SINE Alu 1 294 -18 1850 232 35 60 chr6 49362754 49363060 -133052182 + L1M4 LINE L1 3151 3433 -2713 1864 88 0 31 chr6 49363060 49363321 -133051921 + AluSx SINE Alu 1 253 -59 1850 232 35 60 chr6 49363321 49363647 -133051595 + L1M4 LINE L1 3433 3766 -2380 1337 175 40 0 chr6 49363680 49363932 -133051310 + MER7A DNA MER2_type 4 263 -83 801 231 48 15 chr6 49363968 49364237 -133051005 + L1M4 LINE L1 3786 4063 -2083 638 119 9 55 chr6 49364238 49364347 -133050895 + 5S rRNA rRNA 18 121 0 1158 244 22 16 chr6 49364383 49364703 -133050539 + L1M4 LINE L1 4076 4397 -1749 1233 251 61 36 chr6 49364725 49365251 -133049991 - HAL1 LINE L1 -1187 1320 782 719 211 0 9 chr6 49365255 49365489 -133049753 + (TG)n Simple_repeat Simple_repeat 1 231 0 207 211 0 0 chr6 49365490 49365528 -133049714 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 296 241 115 0 chr6 49365531 49365618 -133049624 - HAL1 LINE L1 -1714 793 697 642 235 124 7 chr6 49365732 49365885 -133049357 - FAM SINE Alu -4 171 1 280 337 10 10 chr6 49365944 49366042 -133049200 + L2 LINE L2 3175 3272 0 1512 102 203 0 chr6 49366117 49366387 -133048855 + AluSx SINE Alu 1 318 0 401 315 43 9 chr6 49367001 49367181 -133048061 - MIR SINE MIR -10 252 65 559 263 123 6 chr6 49367786 49367957 -133047285 + MIR SINE MIR 10 200 -62 2053 115 13 7 chr6 49367996 49368301 -133046941 - AluSq SINE Alu -6 307 1 1463 176 49 39 chr6 49368340 49368647 -133046595 + AluJb SINE Alu 3 312 0 288 0 0 0 chr6 49368770 49368802 -133046440 + (CA)n Simple_repeat Simple_repeat 2 33 0 649 249 54 29 chr6 49369089 49369294 -133045948 - MIR SINE MIR 0 262 53 475 166 86 86 chr6 49369524 49369675 -133045567 - MER96 DNA MER1_type? -24 151 1 459 263 51 7 chr6 49371969 49372106 -133043136 - MIR3 SINE MIR -33 175 33 586 242 76 5 chr6 49375086 49375306 -133039936 - MIR SINE MIR -10 252 18 296 294 18 9 chr6 49375629 49375738 -133039504 - MIR3 SINE MIR -18 190 81 2070 111 28 0 chr6 49375757 49376045 -133039197 - AluSx SINE Alu -16 296 1 215 273 62 70 chr6 49376560 49376592 -133038650 + L2 LINE L2 2992 3023 -249 2215 105 0 0 chr6 49376592 49376898 -133038344 + AluSx SINE Alu 1 306 -6 215 273 62 70 chr6 49376898 49376993 -133038249 + L2 LINE L2 3023 3118 -154 485 258 88 13 chr6 49377244 49377403 -133037839 - MIR SINE MIR -85 177 7 219 36 0 0 chr6 49378085 49378113 -133037129 + (GA)n Simple_repeat Simple_repeat 1 28 0 180 135 0 0 chr6 49381097 49381134 -133034108 + (TG)n Simple_repeat Simple_repeat 1 37 0 38 22 0 0 chr6 49381507 49381552 -133033690 + GC_rich Low_complexity Low_complexity 1 45 0 22 80 0 0 chr6 49382176 49382226 -133033016 + GC_rich Low_complexity Low_complexity 1 50 0 228 135 0 0 chr6 49382377 49382414 -133032828 + (GGA)n Simple_repeat Simple_repeat 1 37 0 216 203 0 43 chr6 49383281 49383350 -133031892 + (CCCCG)n Simple_repeat Simple_repeat 2 67 0 318 196 93 28 chr6 49387566 49387673 -133027569 - MIR3 SINE MIR -37 171 58 622 279 25 35 chr6 49388217 49388418 -133026824 + MIR SINE MIR 57 255 -7 198 279 16 0 chr6 49388701 49388762 -133026480 + L3b LINE CR1 1325 1386 -197 564 198 76 12 chr6 49390035 49390207 -133025035 + MIR SINE MIR 80 262 0 208 311 0 0 chr6 49392279 49392353 -133022889 + CT-rich Low_complexity Low_complexity 2 75 0 204 185 0 0 chr6 49393526 49393580 -133021662 + GA-rich Low_complexity Low_complexity 2 55 0 285 127 38 0 chr6 49396305 49396384 -133018858 + (TA)n Simple_repeat Simple_repeat 2 83 0 204 97 0 0 chr6 49397537 49397568 -133017674 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 22 56 0 0 chr6 49397664 49397700 -133017542 + AT_rich Low_complexity Low_complexity 1 36 0 188 250 42 0 chr6 49399279 49399327 -133015915 - MIR SINE MIR -58 204 155 2308 89 3 0 chr6 49399327 49399631 -133015611 - AluSx SINE Alu -6 306 2 1074 293 69 21 chr6 49399649 49400177 -133015065 + L2 LINE L2 2601 3155 -158 793 189 32 162 chr6 49400180 49400358 -133014884 - MER33 DNA MER1_type -2261 324 221 2247 115 0 3 chr6 49400358 49400671 -133014571 - AluSx SINE Alu 0 312 1 793 189 32 162 chr6 49400671 49400874 -133014368 - MER33 DNA MER1_type -2364 221 1 565 136 144 16 chr6 49400886 49401011 -133014231 + L2 LINE L2 3171 3311 -2 528 293 28 14 chr6 49401216 49401397 -133013845 - MIR SINE MIR -68 140 3 425 271 103 42 chr6 49402111 49402325 -133012917 + MLT1H1 LTR MaLR 79 305 -244 237 197 0 0 chr6 49402325 49402386 -133012856 + GA-rich Low_complexity Low_complexity 2 62 0 477 234 191 43 chr6 49402386 49402617 -133012625 + MLT1H1 LTR MaLR 286 550 -5 233 291 110 8 chr6 49402862 49402989 -133012253 + L3b LINE CR1 1308 1447 -136 358 264 198 22 chr6 49404134 49404316 -133010926 + MIR SINE MIR 48 261 -1 206 100 0 0 chr6 49405586 49405616 -133009626 + MIR SINE MIR 37 66 -196 182 320 0 0 chr6 49405866 49405916 -133009326 + MIR SINE MIR 212 261 -1 469 329 24 29 chr6 49405926 49406133 -133009109 + MIR SINE MIR 7 212 -50 422 145 9 8 chr6 49407405 49407509 -133007733 + MER53 DNA DNA 3 189 0 365 324 0 0 chr6 49408024 49408135 -133007107 + MIR SINE MIR 33 143 -65 533 253 99 47 chr6 49408169 49408327 -133006915 - MER112 DNA MER1_type -12 248 73 198 0 0 0 chr6 49408327 49408349 -133006893 + (TG)n Simple_repeat Simple_repeat 2 23 0 533 253 99 47 chr6 49408349 49408423 -133006819 - MER112 DNA MER1_type -187 73 4 266 260 122 41 chr6 49409981 49410104 -133005138 - MIR3 SINE MIR -27 181 49 258 32 0 0 chr6 49410187 49410218 -133005024 + (TG)n Simple_repeat Simple_repeat 1 31 0 212 308 29 10 chr6 49410946 49411050 -133004192 + MIR3 SINE MIR 78 183 -25 235 241 12 36 chr6 49411365 49411448 -133003794 + GA-rich Low_complexity Low_complexity 5 85 0 212 294 69 0 chr6 49411533 49411635 -133003607 + L2 LINE L2 2996 3104 -209 1214 245 132 44 chr6 49411664 49412222 -133003020 + L2 LINE L2 2708 3310 -3 417 277 76 8 chr6 49412304 49412423 -133002819 + L2 LINE L2 3186 3312 -1 670 275 131 53 chr6 49413670 49414453 -133000789 + L2 LINE L2 2396 3303 -10 255 61 0 0 chr6 49414455 49414488 -133000754 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 309 285 18 60 chr6 49414692 49414835 -133000407 + MIR3 SINE MIR 48 185 -23 276 194 104 0 chr6 49415379 49415446 -132999796 + MIR3 SINE MIR 109 182 -26 322 283 110 12 chr6 49415477 49415629 -132999613 - MIR SINE MIR -56 152 38 195 139 0 0 chr6 49416533 49416569 -132998673 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 216 260 273 20 chr6 49417039 49417189 -132998053 - L2 LINE L2 -81 3191 3004 235 282 12 12 chr6 49417430 49417515 -132997727 - MIR SINE MIR -106 102 18 426 316 71 10 chr6 49418566 49418762 -132996480 - MIR SINE MIR -45 217 10 221 254 42 28 chr6 49419313 49419384 -132995858 - MIR SINE MIR -71 137 66 2324 76 0 0 chr6 49419645 49419921 -132995321 - AluSq SINE Alu -37 276 1 2372 84 7 0 chr6 49420075 49420372 -132994870 - AluSg SINE Alu -11 299 1 222 231 137 13 chr6 49420655 49420772 -132994470 + MER5A DNA MER1_type 2 189 0 233 220 34 0 chr6 49421964 49422023 -132993219 + tRNA-Leu-CTG tRNA tRNA 23 83 -3 220 285 131 22 chr6 49422074 49422210 -132993032 + MIR SINE MIR 3 151 -62 1971 144 14 0 chr6 49422260 49422551 -132992691 + AluSx SINE Alu 1 295 -17 2117 108 30 10 chr6 49422555 49422850 -132992392 + AluSg SINE Alu 1 301 -9 724 209 12 6 chr6 49422948 49423111 -132992131 - FRAM SINE Alu -2 164 1 2176 171 34 3 chr6 49423113 49423500 -132991742 + MER21A LTR ERV1 533 931 0 566 306 44 32 chr6 49423730 49423815 -132991427 + MIR SINE MIR 6 88 -174 1774 158 0 51 chr6 49423815 49424126 -132991116 - AluJb SINE Alu -17 295 1 566 306 44 32 chr6 49424126 49424292 -132990950 + MIR SINE MIR 88 260 -2 1179 198 27 91 chr6 49425124 49425422 -132989820 + AluJo SINE Alu 1 279 -33 189 0 0 0 chr6 49425422 49425443 -132989799 + (CCA)n Simple_repeat Simple_repeat 3 23 0 1057 211 0 5 chr6 49425799 49426012 -132989230 - MER46A DNA MER2_type 0 236 25 21 36 0 0 chr6 49426345 49426373 -132988869 + GC_rich Low_complexity Low_complexity 1 28 0 2833 81 33 81 chr6 49426423 49427067 -132988175 + SVA Other Other 393 868 -592 6978 56 15 50 chr6 49427080 49428068 -132987174 + SVA Other Other 433 1386 0 3625 164 102 57 chr6 49428083 49428923 -132986319 - MER21A LTR ERV1 -53 878 1 326 177 14 59 chr6 49428937 49429108 -132986134 + L1ME LINE L1 5306 5618 -503 521 171 135 0 chr6 49429224 49429432 -132985810 - L1MD3 LINE L1 -10 7985 7657 244 122 20 20 chr6 49429433 49429482 -132985760 - Alu SINE Alu -8 300 252 464 189 21 112 chr6 49429482 49429558 -132985684 - MER5B DNA MER1_type -45 133 52 2398 94 0 0 chr6 49429558 49429865 -132985377 - AluSq SINE Alu -6 307 1 464 189 21 112 chr6 49429865 49429876 -132985366 - MER5B DNA MER1_type -126 52 42 2187 93 10 0 chr6 49429876 49430167 -132985075 - AluY SINE Alu -17 294 1 464 189 21 112 chr6 49430167 49430221 -132985021 - MER5B DNA MER1_type -136 42 4 2338 50 3 72 chr6 49430775 49431096 -132984146 - AluSx SINE Alu -13 299 1 24 0 0 0 chr6 49431993 49432017 -132983225 + GC_rich Low_complexity Low_complexity 1 24 0 334 311 70 22 chr6 49433122 49433350 -132981892 - L1MC5 LINE L1 -17 7944 7706 21 0 0 0 chr6 49433465 49433486 -132981756 + AT_rich Low_complexity Low_complexity 1 21 0 49 0 0 0 chr6 49433537 49433586 -132981656 + AT_rich Low_complexity Low_complexity 1 49 0 1691 145 13 53 chr6 49433658 49433840 -132981402 - AluJb SINE Alu -21 291 103 2413 95 0 20 chr6 49433840 49434145 -132981097 + AluSx SINE Alu 1 299 -13 180 0 0 0 chr6 49434145 49434165 -132981077 + (TA)n Simple_repeat Simple_repeat 2 21 0 1691 145 13 53 chr6 49434165 49434284 -132980958 - AluJb SINE Alu -207 105 1 189 185 62 46 chr6 49434650 49434715 -132980527 + MIR SINE MIR 96 161 -101 1884 192 3 0 chr6 49435593 49435901 -132979341 + AluJb SINE Alu 1 309 -3 1747 155 14 28 chr6 49436152 49436436 -132978806 - AluJo SINE Alu -16 296 17 2373 92 20 0 chr6 49437627 49437932 -132977310 - AluY SINE Alu 0 311 1 252 0 0 0 chr6 49437938 49437966 -132977276 + (A)n Simple_repeat Simple_repeat 1 28 0 1221 154 0 0 chr6 49438000 49438169 -132977073 - AluSx SINE Alu -143 169 1 2290 104 3 0 chr6 49438220 49438518 -132976724 - AluSx SINE Alu -13 299 1 2437 97 3 0 chr6 49438651 49438959 -132976283 - AluSq SINE Alu -4 309 1 1356 198 36 0 chr6 49439359 49439606 -132975636 - AluJb SINE Alu -22 290 35 2501 81 3 0 chr6 49439633 49439943 -132975299 - AluY SINE Alu 0 311 1 1612 163 12 72 chr6 49440017 49440205 -132975037 - AluJb SINE Alu -12 300 137 185 0 40 0 chr6 49440205 49440230 -132975012 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1612 163 12 72 chr6 49440230 49440360 -132974882 - AluJb SINE Alu -175 137 1 2254 114 7 3 chr6 49441137 49441444 -132973798 - AluSx SINE Alu -4 308 1 2254 108 0 3 chr6 49441550 49441860 -132973382 - AluSx SINE Alu 0 309 1 1148 73 0 0 chr6 49441860 49441996 -132973246 - AluSq/x SINE Alu -176 136 1 2170 115 10 0 chr6 49442385 49442681 -132972561 - AluSx SINE Alu -9 303 5 893 122 16 0 chr6 49442748 49442871 -132972371 + AluSq/x SINE Alu 1 125 -187 2308 81 13 10 chr6 49443447 49443745 -132971497 + AluSq SINE Alu 1 299 -14 389 191 66 72 chr6 49444068 49444220 -132971022 - MIR SINE MIR -72 190 40 211 205 0 0 chr6 49444218 49444257 -132970985 - MIR SINE MIR -111 151 113 * 415 316 65 7 chr6 49446026 49446165 -132969077 - MIR3 SINE MIR -40 168 22 2621 56 0 3 chr6 49446310 49446613 -132968629 - AluY SINE Alu -9 302 1 261 296 0 0 chr6 49446627 49446698 -132968544 + MIR3 SINE MIR 105 175 -33 245 295 112 24 chr6 49447118 49447500 -132967742 - L1ME3A LINE L1 -188 5982 5563 621 294 27 5 chr6 49447718 49447905 -132967337 - MIR SINE MIR -1 261 71 240 376 0 0 chr6 49450281 49450374 -132964868 - MIR SINE MIR -63 145 53 226 253 42 32 chr6 49450463 49450558 -132964684 + MIR SINE MIR 123 218 -44 282 292 0 10 chr6 49450616 49450712 -132964530 + (TG)n Simple_repeat Simple_repeat 1 95 0 445 259 46 52 chr6 49451386 49451569 -132963673 - MIR3 SINE MIR -10 198 9 297 51 0 0 chr6 49451572 49451611 -132963631 + (CA)n Simple_repeat Simple_repeat 2 40 0 269 256 93 99 chr6 49451611 49451783 -132963459 + L2 LINE L2 3093 3263 -50 230 163 0 23 chr6 49452419 49452462 -132962780 + MIR SINE MIR 119 160 -102 199 291 0 0 chr6 49453244 49453299 -132961943 + L2 LINE L2 3137 3191 -81 497 296 27 32 chr6 49454943 49455129 -132960113 - MER5A DNA MER1_type 0 189 5 2264 94 3 20 chr6 49455462 49455761 -132959481 - AluSc SINE Alu -15 294 1 261 185 0 19 chr6 49456528 49456582 -132958660 - L3 LINE CR1 -754 823 771 382 310 126 73 chr6 49456693 49457051 -132958191 - L2 LINE L2 0 3272 2896 232 342 42 0 chr6 49457401 49457521 -132957721 + MIR SINE MIR 74 198 -64 546 293 28 11 chr6 49458020 49458201 -132957041 + MIR3 SINE MIR 10 193 -15 407 299 17 8 chr6 49458464 49458581 -132956661 - L2 LINE L2 0 3272 3155 379 237 18 26 chr6 49459712 49459826 -132955416 - MIR SINE MIR -76 132 20 604 205 24 16 chr6 49459850 49459977 -132955265 - MER45A DNA AcHobo 0 178 51 193 243 15 132 chr6 49460748 49460884 -132954358 + MIR3 SINE MIR 58 177 -31 299 306 212 36 chr6 49461600 49461878 -132953364 - L2 LINE L2 -338 2976 2650 1159 221 16 19 chr6 49462419 49462677 -132952565 - MIR SINE MIR 0 262 6 586 227 71 7 chr6 49463249 49463403 -132951839 + MER3 DNA MER1_type 1 164 -45 1130 188 0 10 chr6 49463412 49463614 -132951628 - AluJb SINE Alu -29 283 84 310 114 0 0 chr6 49463614 49463658 -132951584 + MER3 DNA MER1_type 155 198 -11 207 0 0 0 chr6 49465461 49465484 -132949758 + (TG)n Simple_repeat Simple_repeat 1 23 0 285 293 114 24 chr6 49465935 49466058 -132949184 + MIR3 SINE MIR 3 136 -72 733 181 10 93 chr6 49466241 49466368 -132948874 - MER5B DNA MER1_type -1 177 70 1682 174 14 11 chr6 49466368 49466655 -132948587 - AluJb SINE Alu -24 288 1 733 181 10 93 chr6 49466655 49466720 -132948522 - MER5B DNA MER1_type -108 70 1 210 188 0 42 chr6 49466863 49466911 -132948331 + MIR SINE MIR 100 145 -117 23 0 0 0 chr6 49468916 49468939 -132946303 + AT_rich Low_complexity Low_complexity 1 23 0 2033 136 0 0 chr6 49468942 49469250 -132945992 + AluSx SINE Alu 4 311 -1 265 190 190 0 chr6 49469286 49469365 -132945877 + L1MC4 LINE L1 7949 8042 0 500 239 117 27 chr6 49470119 49470307 -132944935 + MIR SINE MIR 28 232 -30 413 325 52 46 chr6 49473118 49473312 -132941930 + MIR SINE MIR 25 219 -43 302 206 48 0 chr6 49473355 49473418 -132941824 + MIR SINE MIR 108 173 -89 198 0 0 0 chr6 49474763 49474785 -132940457 + (TG)n Simple_repeat Simple_repeat 1 22 0 308 247 62 0 chr6 49475163 49475244 -132939998 + L2 LINE L2 3133 3218 -95 1342 186 38 0 chr6 49475245 49475509 -132939733 - AluJo SINE Alu -9 303 30 428 215 9 47 chr6 49475562 49475669 -132939573 + L2 LINE L2 3210 3312 -1 425 309 23 17 chr6 49475669 49475844 -132939398 - L2 LINE L2 -221 3051 2876 354 45 0 0 chr6 49475844 49475888 -132939354 + (TG)n Simple_repeat Simple_repeat 1 44 0 589 303 56 48 chr6 49475898 49476271 -132938971 - L2 LINE L2 -542 2772 2397 317 231 39 0 chr6 49478125 49478203 -132937039 - MIR3 SINE MIR -20 188 108 203 317 17 0 chr6 49478524 49478584 -132936658 + MIR SINE MIR 86 146 -62 673 228 21 0 chr6 49478672 49478817 -132936425 + MIR SINE MIR 91 238 -24 1259 146 0 10 chr6 49478818 49479042 -132936200 - AluJo SINE Alu 0 307 86 609 95 0 0 chr6 49480627 49480711 -132934531 + AluS SINE Alu 2 85 -227 384 254 166 22 chr6 49480726 49480907 -132934335 - MIR SINE MIR -21 241 35 226 396 10 0 chr6 49481837 49481933 -132933309 + MIR SINE MIR 64 160 -102 792 253 54 14 chr6 49482018 49482239 -132933003 - MIR SINE MIR -19 243 14 841 251 53 8 chr6 49482835 49483079 -132932163 - MIR SINE MIR -1 261 11 229 190 50 30 chr6 49483954 49484054 -132931188 + (CAGG)n Simple_repeat Simple_repeat 3 104 0 235 240 0 0 chr6 49484405 49484455 -132930787 + L2 LINE L2 3264 3313 0 523 294 181 12 chr6 49484870 49485213 -132930029 - L2 LINE L2 -2 3311 2911 5185 65 1 1 chr6 49485215 49485862 -132929380 - L1PA5 LINE L1 -1 6153 5507 704 18 2 3 chr6 49485862 49485964 -132929278 + L1PA5 LINE L1 5434 5534 -620 476 292 108 12 chr6 49485965 49486215 -132929027 - L2 LINE L2 -415 2899 2626 322 345 67 0 chr6 49486214 49486379 -132928863 + MIR SINE MIR 79 254 -8 * 182 351 96 11 chr6 49486416 49486510 -132928732 - L3 LINE CR1 -75 1502 1401 2423 157 13 13 chr6 49486986 49487382 -132927860 - MSTD LTR MaLR 0 396 1 205 326 112 31 chr6 49487494 49487592 -132927650 - MIR SINE MIR -16 246 141 757 264 62 73 chr6 49487652 49488008 -132927234 + LTR16A1 LTR ERVL 106 457 0 784 244 14 42 chr6 49488055 49488268 -132926974 - MIR SINE MIR 0 262 56 349 248 0 29 chr6 49488301 49488438 -132926804 + (CATA)n Simple_repeat Simple_repeat 4 136 0 209 231 15 31 chr6 49490177 49490242 -132925000 + CT-rich Low_complexity Low_complexity 4 67 0 506 298 115 52 chr6 49490244 49490627 -132924615 - L2 LINE L2 -1 3271 2865 321 293 121 59 chr6 49490818 49491074 -132924168 + MLT1K LTR MaLR 15 286 -302 263 267 76 76 chr6 49491079 49491210 -132924032 + MIR SINE MIR 132 262 0 1446 271 103 13 chr6 49494427 49494963 -132920279 - L1MC4a LINE L1 -1818 5990 5407 216 353 47 0 chr6 49495441 49495526 -132919716 - L3 LINE CR1 -1201 376 288 440 271 99 16 chr6 49495880 49496072 -132919170 - MIR3 SINE MIR 0 208 1 288 316 42 16 chr6 49496638 49496831 -132918411 + L2 LINE L2 2885 3082 -190 902 275 107 23 chr6 49496930 49497239 -132918003 - LTR16C LTR ERVL -30 461 127 253 293 61 12 chr6 49497295 49497377 -132917865 - L2 LINE L2 -50 3222 3137 786 192 58 0 chr6 49497428 49497584 -132917658 - MER6B DNA MER2_type 0 210 46 302 282 121 13 chr6 49497601 49497750 -132917492 - L2 LINE L2 -174 3098 2934 351 243 125 7 chr6 49498026 49498178 -132917064 + Charlie7 DNA MER1_type 2443 2612 0 5609 156 62 20 chr6 49498799 49499839 -132915403 - MER21-int LTR ERV1 -1036 3155 2072 629 211 45 8 chr6 49499839 49499972 -132915270 - MER21B LTR ERV1 -400 463 326 264 312 11 0 chr6 49500765 49500858 -132914384 + L2 LINE L2 2580 2673 -641 228 35 0 0 chr6 49501022 49501051 -132914191 + (TC)n Simple_repeat Simple_repeat 1 29 0 1373 187 43 27 chr6 49501526 49501826 -132913416 - AluJo SINE Alu -7 305 1 1310 273 104 19 chr6 49501856 49502479 -132912763 - L1ME3A LINE L1 -5 6165 5456 1275 231 17 22 chr6 49502724 49503083 -132912159 - L1ME1 LINE L1 -3 6163 5807 801 93 0 0 chr6 49503085 49503193 -132912049 - AluSq/x SINE Alu -203 109 2 264 175 0 0 chr6 49503284 49503347 -132911895 + GA-rich Low_complexity Low_complexity 2 64 0 1738 116 32 46 chr6 49504042 49504326 -132910916 + AluSx SINE Alu 15 294 -18 199 267 0 0 chr6 49504453 49504498 -132910744 - MIR SINE MIR -180 82 38 237 135 0 0 chr6 49505013 49505050 -132910192 + L3 LINE CR1 1539 1575 -2 272 253 36 24 chr6 49505540 49505623 -132909619 - MIR SINE MIR -102 160 77 250 286 71 63 chr6 49506517 49506738 -132908504 - MIR3 SINE MIR -26 236 10 237 339 57 57 chr6 49507467 49507644 -132907598 - MIR SINE MIR -66 196 20 287 235 106 12 chr6 49508810 49508895 -132906347 + MIR SINE MIR 23 115 -93 602 229 106 0 chr6 49509714 49509893 -132905349 - MIR SINE MIR -12 250 53 1609 233 119 20 chr6 49509898 49510593 -132904649 + L2 LINE L2 2545 3313 0 186 339 0 0 chr6 49510939 49510998 -132904244 - L2 LINE L2 -6 3266 3208 217 211 0 0 chr6 49511292 49511330 -132903912 + MIR SINE MIR 110 147 -61 217 306 222 9 chr6 49511794 49511902 -132903340 - MIR3 SINE MIR -63 145 15 726 287 55 28 chr6 49512108 49512362 -132902880 + MIR SINE MIR 2 262 0 453 296 51 15 chr6 49512583 49512779 -132902463 - MIR SINE MIR -11 251 49 618 121 11 58 chr6 49513023 49513197 -132902045 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 264 172 0 0 chr6 49513214 49513272 -132901970 + GA-rich Low_complexity Low_complexity 3 60 0 1053 270 39 12 chr6 49513668 49514104 -132901138 + MLT1J LTR MaLR 1 488 -23 411 270 64 85 chr6 49514221 49514551 -132900691 + MLT1F LTR MaLR 20 342 -200 368 289 11 0 chr6 49514548 49514638 -132900604 + MLT1F LTR MaLR 447 537 -58 * 186 103 0 0 chr6 49515061 49515090 -132900152 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 856 221 84 9 chr6 49515239 49515452 -132899790 - MIR SINE MIR -1 261 33 190 288 27 41 chr6 49516819 49516892 -132898350 + MIR3 SINE MIR 13 84 -124 412 238 105 125 chr6 49517034 49517289 -132897953 + LTR8A LTR ERV1 1 248 -479 182 37 37 0 chr6 49517289 49517316 -132897926 + (CTAAG)n Simple_repeat Simple_repeat 2 29 0 412 238 105 125 chr6 49517316 49517421 -132897821 + LTR8A LTR ERV1 248 354 -373 719 256 71 33 chr6 49517529 49517867 -132897375 + LTR26 LTR ERV1 280 603 0 509 256 0 16 chr6 49518278 49518403 -132896839 + L2 LINE L2 3187 3309 -4 1896 139 0 26 chr6 49518684 49518987 -132896255 + AluJo SINE Alu 6 300 -12 199 291 73 55 chr6 49518989 49519099 -132896143 - MIR3 SINE MIR -82 126 15 194 353 137 0 chr6 49519496 49519635 -132895607 - L3 LINE CR1 -8 1569 1412 2122 103 0 0 chr6 49520110 49520414 -132894828 + AluSg SINE Alu 1 304 0 23 0 0 0 chr6 49520501 49520524 -132894718 + AT_rich Low_complexity Low_complexity 1 23 0 340 243 117 51 chr6 49520611 49520825 -132894417 + MIR SINE MIR 35 262 0 415 298 218 5 chr6 49522420 49522608 -132892634 - MIR SINE MIR 0 262 35 252 328 0 0 chr6 49523149 49523213 -132892029 - L2 LINE L2 0 3313 3250 666 199 262 0 chr6 49523880 49524021 -132891221 + MER45A DNA AcHobo 1 178 0 398 270 47 20 chr6 49524393 49524541 -132890701 + MIR SINE MIR 89 240 -22 223 204 0 0 chr6 49524719 49524763 -132890479 - MIR SINE MIR -72 136 93 1601 139 40 4 chr6 49524961 49525261 -132889981 - AluJb SINE Alu 0 310 1 398 271 24 82 chr6 49525642 49525702 -132889540 - L2 LINE L2 -550 2764 2702 2268 80 10 0 chr6 49525702 49526003 -132889239 - AluSp SINE Alu -9 304 1 398 271 24 82 chr6 49526003 49526112 -132889130 - L2 LINE L2 -612 2702 2605 373 240 31 0 chr6 49527232 49527328 -132887914 + MIR SINE MIR 33 131 -77 218 286 16 0 chr6 49527336 49527399 -132887843 + MIR SINE MIR 70 133 -129 261 341 95 0 chr6 49527401 49527527 -132887715 + MIR3 SINE MIR 65 202 -6 317 338 107 8 chr6 49528179 49528562 -132886680 + L2 LINE L2 2562 2995 -277 2206 87 13 10 chr6 49528578 49528890 -132886352 + AluSq SINE Alu 1 313 0 1048 229 184 38 chr6 49530074 49530228 -132885014 - L2 LINE L2 0 3313 3183 1470 178 0 0 chr6 49530228 49530517 -132884725 + AluJo SINE Alu 44 312 0 1048 229 184 38 chr6 49530517 49530781 -132884461 - L2 LINE L2 -130 3183 2834 360 276 67 0 chr6 49530798 49530903 -132884339 - MIR SINE MIR -68 194 83 275 297 0 14 chr6 49530957 49531031 -132884211 + MER5B DNA MER1_type 1 73 -105 267 353 96 27 chr6 49531107 49531294 -132883948 + MIR3 SINE MIR 4 203 -5 252 262 140 28 chr6 49531929 49532036 -132883206 - MIR SINE MIR -74 134 16 220 253 91 20 chr6 49532028 49532127 -132883115 - L2 LINE L2 -29 3243 3138 * 243 186 0 0 chr6 49532277 49532320 -132882922 + MIR SINE MIR 111 153 -109 325 235 129 38 chr6 49534557 49534689 -132880553 - MIR SINE MIR -111 151 8 200 274 20 0 chr6 49534973 49535024 -132880218 + (CTCA)n Simple_repeat Simple_repeat 2 53 0 399 41 0 0 chr6 49535114 49535163 -132880079 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 272 282 0 0 chr6 49536663 49536734 -132878508 + MIR SINE MIR 81 151 -57 230 54 0 27 chr6 49538000 49538037 -132877205 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 211 137 20 20 chr6 49538093 49538144 -132877098 + GA-rich Low_complexity Low_complexity 3 53 0 571 310 103 4 chr6 49539108 49539340 -132875902 - MIR SINE MIR 0 262 8 266 267 67 11 chr6 49540096 49540186 -132875056 - L2 LINE L2 -22 3250 3156 2163 96 3 0 chr6 49541227 49541519 -132873723 - AluSx SINE Alu -19 293 1 722 241 82 0 chr6 49541900 49542095 -132873147 - MIR SINE MIR -40 222 12 665 275 72 14 chr6 49542534 49542756 -132872486 + MIR SINE MIR 28 262 0 221 289 0 0 chr6 49543656 49543708 -132871534 - L2 LINE L2 -4 3309 3258 * 405 297 68 14 chr6 49543703 49543807 -132871435 - MIR SINE MIR -78 184 68 2165 107 3 3 chr6 49543807 49544115 -132871127 + AluSx SINE Alu 1 308 -4 405 297 68 14 chr6 49544115 49544158 -132871084 - MIR SINE MIR -194 68 29 386 228 337 21 chr6 49544217 49544410 -132870832 - MIR SINE MIR -1 261 8 1140 34 29 17 chr6 49545055 49545138 -132870104 + (GAAA)n Simple_repeat Simple_repeat 1 260 0 1140 34 29 17 chr6 49545138 49545313 -132869929 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 270 288 0 98 chr6 49545647 49545779 -132869463 + MIR SINE MIR 31 149 -113 203 292 79 22 chr6 49545961 49546050 -132869192 - L2 LINE L2 -20 3252 3159 423 38 0 0 chr6 49546840 49546893 -132868349 + (TG)n Simple_repeat Simple_repeat 1 53 0 257 267 8 108 chr6 49547510 49547630 -132867612 - MER5B DNA MER1_type -40 138 31 190 271 165 0 chr6 49548495 49548580 -132866662 - MIR SINE MIR -67 141 43 391 307 26 0 chr6 49548916 49549030 -132866212 - MIR SINE MIR -88 174 58 469 252 164 6 chr6 49549288 49549447 -132865795 + MIR SINE MIR 24 207 -55 187 325 38 12 chr6 49549459 49549539 -132865703 - MIR SINE MIR -74 134 53 278 268 41 21 chr6 49550776 49550873 -132864369 + L1ME LINE L1 67 165 -5954 470 298 84 69 chr6 49551158 49551465 -132863777 + L1ME LINE L1 541 878 -5311 1601 246 73 39 chr6 49551465 49552002 -132863240 - MLT1H1 LTR MaLR 0 555 1 470 298 84 69 chr6 49552002 49552036 -132863206 + L1ME LINE L1 878 910 -5279 183 80 0 0 chr6 49552488 49552513 -132862729 + (GA)n Simple_repeat Simple_repeat 2 26 0 771 348 95 9 chr6 49552513 49553142 -132862100 + L1ME2 LINE L1 5265 5947 -217 197 333 14 0 chr6 49553383 49553452 -132861790 - MER5A DNA MER1_type -52 137 68 700 340 58 67 chr6 49553468 49554112 -132861130 - L3 LINE CR1 -73 1504 867 261 0 0 0 chr6 49554114 49554143 -132861099 + (CA)n Simple_repeat Simple_repeat 2 30 0 666 280 23 16 chr6 49554322 49554577 -132860665 - L1MC4a LINE L1 -260 5906 5636 750 293 69 40 chr6 49554577 49554956 -132860286 - L3 LINE CR1 -713 864 475 356 312 71 0 chr6 49555073 49555234 -132860008 + MIR SINE MIR 30 205 -57 183 323 32 0 chr6 49556422 49556484 -132858758 - MIR SINE MIR -129 79 16 1454 247 90 10 chr6 49558514 49559004 -132856238 + L2 LINE L2 2775 3305 -8 401 254 284 0 chr6 49559245 49559414 -132855828 - MIR SINE MIR -11 251 35 258 306 0 14 chr6 49560017 49560089 -132855153 + L2 LINE L2 3126 3196 -76 521 283 126 52 chr6 49561200 49561564 -132853678 + L1M4 LINE L1 485 875 -5667 22 35 0 0 chr6 49561600 49561629 -132853613 + AT_rich Low_complexity Low_complexity 1 29 0 963 217 17 77 chr6 49561634 49561934 -132853308 + L1M4 LINE L1 893 1174 -5372 655 257 99 0 chr6 49562663 49562865 -132852377 - MIR SINE MIR -1 261 40 1068 227 10 0 chr6 49562883 49563090 -132852152 - MER3 DNA MER1_type 0 209 1 187 294 0 0 chr6 49563185 49563236 -132852006 - MIR SINE MIR -3 259 209 213 305 24 12 chr6 49564061 49564143 -132851099 + MIR SINE MIR 178 260 -2 657 311 26 57 chr6 49564250 49564600 -132850642 - MLT1I LTR MaLR 0 409 71 3246 183 30 57 chr6 49564694 49564973 -132850269 + L1MC3 LINE L1 5456 5741 -2044 1993 143 0 31 chr6 49564973 49565295 -132849947 + AluJb SINE Alu 1 312 0 3246 183 30 57 chr6 49565295 49565787 -132849455 + L1MC3 LINE L1 5741 6206 -1579 350 235 169 22 chr6 49566311 49566447 -132848795 + MIR SINE MIR 105 260 -2 303 287 165 0 chr6 49566683 49566798 -132848444 + MIR SINE MIR 103 236 -26 524 291 103 0 chr6 49567349 49567524 -132847718 - MIR SINE MIR -24 238 46 363 308 85 8 chr6 49567816 49567946 -132847296 - L2 LINE L2 0 3272 3133 226 231 19 0 chr6 49569527 49569579 -132845663 - L1M4 LINE L1 -1386 4760 4708 234 316 123 23 chr6 49569582 49569753 -132845489 - L2 LINE L2 -212 3060 2873 3240 208 38 55 chr6 49570597 49572001 -132843241 - L1ME1 LINE L1 -17 6149 4775 729 202 0 8 chr6 49572001 49572130 -132843112 + FLAM_A SINE Alu 2 129 -4 3240 208 38 55 chr6 49572130 49572465 -132842777 - L1ME1 LINE L1 -1391 4775 4436 437 261 22 30 chr6 49572470 49572604 -132842638 + L2 LINE L2 3179 3311 -2 207 320 82 10 chr6 49572605 49572702 -132842540 - MIR SINE MIR -51 211 108 2444 191 69 11 chr6 49572705 49573250 -132841992 + MLT1E1 LTR MaLR 1 652 -2 919 270 21 16 chr6 49573686 49573981 -132841261 - L1ME3A LINE L1 -230 5940 5637 815 189 19 13 chr6 49574676 49574835 -132840407 - MLT2B3 LTR ERVL -394 160 1 355 266 40 75 chr6 49576058 49576231 -132839011 - LTR16C LTR ERVL 0 491 325 294 198 35 138 chr6 49577530 49577551 -132837691 - MIR SINE MIR -70 192 170 1495 150 88 7 chr6 49577551 49577824 -132837418 + AluJo SINE Alu 1 295 -7 294 198 35 138 chr6 49577824 49577918 -132837324 - MIR SINE MIR -92 170 89 784 282 67 32 chr6 49579358 49579834 -132835408 - MLT1H LTR MaLR -6 543 12 452 243 0 113 chr6 49580458 49580643 -132834599 - L2 LINE L2 0 3313 3150 810 187 77 32 chr6 49580648 49580960 -132834282 - MLT1C LTR MaLR -16 374 6 332 246 15 0 chr6 49580967 49581032 -132834210 - MLT1D LTR MaLR -439 66 1 936 239 183 14 chr6 49581037 49581470 -132833772 - L2 LINE L2 -177 3136 2644 288 250 38 0 chr6 49582604 49582684 -132832558 + MIR SINE MIR 65 147 -115 317 285 124 24 chr6 49585274 49585572 -132829670 + L1MC5 LINE L1 7609 7936 -25 502 240 207 0 chr6 49585582 49585761 -132829481 + MIR SINE MIR 47 262 0 831 137 8 0 chr6 49585775 49585899 -132829343 + AluJo SINE Alu 12 136 -176 417 54 0 0 chr6 49585942 49585998 -132829244 + (TG)n Simple_repeat Simple_repeat 2 57 0 215 348 0 22 chr6 49586756 49586845 -132828397 - L2 LINE L2 -80 3192 3106 466 204 71 9 chr6 49588174 49588287 -132826955 - MIR SINE MIR -119 143 24 22 0 0 0 chr6 49588474 49588496 -132826746 + GC_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr6 49588502 49588529 -132826713 + (TAA)n Simple_repeat Simple_repeat 1 27 0 662 269 65 25 chr6 49588530 49588731 -132826511 - MIR SINE MIR -6 256 48 327 329 14 7 chr6 49589069 49589215 -132826027 + (TGG)n Simple_repeat Simple_repeat 1 147 0 498 256 88 19 chr6 49589301 49589461 -132825781 - MIR SINE MIR -75 187 17 206 279 44 15 chr6 49589579 49589647 -132825595 + MIR SINE MIR 24 93 -115 1671 163 0 42 chr6 49590250 49590557 -132824685 + AluJo SINE Alu 2 295 -17 1860 227 45 4 chr6 49592425 49592887 -132822355 - L1ME3 LINE L1 -8 6154 5674 468 0 0 0 chr6 49593100 49593152 -132822090 + (TG)n Simple_repeat Simple_repeat 1 52 0 2089 189 15 50 chr6 49593162 49593637 -132821605 - MLT1C LTR MaLR -9 458 1 314 353 6 0 chr6 49593648 49593821 -132821421 + (TG)n Simple_repeat Simple_repeat 1 174 0 225 274 0 0 chr6 49594537 49594588 -132820654 + AluJo SINE Alu 1 51 -257 4351 113 344 98 chr6 49594588 49595946 -132819296 + pTR5 LTR ERV1 747 2438 0 1336 185 8 8 chr6 49595947 49596206 -132819036 + AluJo SINE Alu 53 311 -1 349 247 0 13 chr6 49596230 49596307 -132818935 - MIR SINE MIR -103 159 84 843 150 116 23 chr6 49598559 49598732 -132816510 - MER53 DNA DNA 0 189 1 25 51 0 0 chr6 49598925 49598964 -132816278 + GC_rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr6 49599434 49599462 -132815780 + (CGG)n Simple_repeat Simple_repeat 3 30 0 218 243 0 43 chr6 49601533 49601603 -132813639 + L2 LINE L2 3126 3192 -80 391 246 42 8 chr6 49602439 49602557 -132812685 + MIR SINE MIR 23 144 -64 417 54 0 0 chr6 49603797 49603853 -132811389 + (TC)n Simple_repeat Simple_repeat 2 57 0 728 276 102 17 chr6 49603919 49604213 -132811029 - L2 LINE L2 -35 3278 2960 181 429 26 0 chr6 49604272 49604426 -132810816 - MIR SINE MIR 0 262 105 378 314 34 42 chr6 49604537 49604776 -132810466 - L2 LINE L2 -218 3054 2818 441 334 168 7 chr6 49605543 49605965 -132809277 + L3 LINE CR1 740 1229 -348 289 319 118 0 chr6 49606075 49606194 -132809048 + L2 LINE L2 3139 3271 -1 710 149 18 18 chr6 49606218 49606386 -132808856 + GA-rich Low_complexity Low_complexity 4 171 0 257 357 101 12 chr6 49606405 49606663 -132808579 + L3 LINE CR1 1214 1494 -83 203 133 22 0 chr6 49606669 49606714 -132808528 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 443 328 16 38 chr6 49607789 49607972 -132807270 - MIR3 SINE MIR -11 197 19 876 289 9 0 chr6 49608025 49608253 -132806989 + MIR SINE MIR 33 262 0 242 341 0 0 chr6 49608559 49608647 -132806595 + MIR SINE MIR 113 200 -62 2141 85 7 7 chr6 49609486 49609779 -132805463 + AluSx SINE Alu 1 293 -19 334 292 80 0 chr6 49610025 49610162 -132805080 + MER20B DNA MER1_type 26 173 -610 281 310 0 0 chr6 49610192 49610279 -132804963 - MIR3 SINE MIR -49 159 73 213 314 124 31 chr6 49610406 49610632 -132804610 - L2 LINE L2 -217 3055 2809 1295 209 76 7 chr6 49610662 49610963 -132804279 + MER2 DNA MER2_type 24 345 0 668 243 101 8 chr6 49610963 49611210 -132804032 - L1MEd LINE L1 -3666 2463 2194 498 177 0 0 chr6 49611213 49611292 -132803950 - AluJb SINE Alu -13 299 221 1079 138 0 0 chr6 49611304 49611463 -132803779 - AluJb SINE Alu -148 164 6 351 307 118 58 chr6 49611489 49611818 -132803424 - L1MEd LINE L1 -3953 2178 1830 332 314 85 4 chr6 49611838 49612086 -132803156 - L1MEd LINE L1 -4570 1740 1473 6128 151 43 30 chr6 49612110 49613292 -132801950 + Tigger3b DNA MER2_type 2 1199 -32 3532 205 67 17 chr6 49613300 49614060 -132801182 + MER21B LTR ERV1 18 815 -48 260 264 49 56 chr6 49614072 49614216 -132801026 - L1MEd LINE L1 -4809 1501 1359 1111 90 0 0 chr6 49614217 49614351 -132800891 + AluSq/x SINE Alu 1 134 -179 1945 99 18 93 chr6 49614352 49614684 -132800558 + AluSc SINE Alu 1 307 -2 544 253 88 70 chr6 49614748 49614986 -132800256 - L1MEd LINE L1 -4867 1252 1020 2339 120 0 0 chr6 49614986 49615286 -132799956 - AluSx SINE Alu -12 300 1 544 253 88 70 chr6 49615286 49615559 -132799683 - L1MEd LINE L1 -5099 1020 780 328 133 24 0 chr6 49615633 49615716 -132799526 + (TG)n Simple_repeat Simple_repeat 2 86 0 1807 184 3 0 chr6 49616085 49616378 -132798864 + AluJo SINE Alu 1 294 -18 322 309 29 34 chr6 49617344 49617551 -132797691 - L2 LINE L2 -1406 1908 1703 350 264 64 8 chr6 49617683 49617808 -132797434 - MIR SINE MIR -118 144 13 257 304 20 10 chr6 49617846 49617948 -132797294 + (CCA)n Simple_repeat Simple_repeat 3 105 0 183 290 48 0 chr6 49618824 49618886 -132796356 + MIR SINE MIR 81 145 -63 640 240 23 68 chr6 49620178 49620399 -132794843 + MIR SINE MIR 23 233 -29 400 296 0 9 chr6 49620638 49620746 -132794496 - MER5B DNA MER1_type -69 109 3 292 299 71 8 chr6 49620920 49621047 -132794195 - L2 LINE L2 0 3272 3138 421 303 0 14 chr6 49621414 49621556 -132793686 - MLT1J LTR MaLR -151 360 221 212 292 42 31 chr6 49621992 49622088 -132793154 + L3 LINE CR1 1409 1505 -72 337 282 105 24 chr6 49622187 49622311 -132792931 + MIR3 SINE MIR 12 145 -63 460 256 39 19 chr6 49622311 49622467 -132792775 - MIR SINE MIR 0 262 104 437 175 16 48 chr6 49622506 49622632 -132792610 - L1MA7 LINE L1 -1 6290 6169 3210 238 54 44 chr6 49622790 49622905 -132792337 - L2 LINE L2 0 3313 3201 2504 66 3 0 chr6 49622905 49623208 -132792034 + AluY SINE Alu 1 304 -7 3210 238 54 44 chr6 49623208 49623857 -132791385 - L2 LINE L2 -112 3201 2527 2105 134 3 3 chr6 49623857 49624156 -132791086 - AluSx SINE Alu -13 299 1 3210 238 54 44 chr6 49624156 49624685 -132790557 - L2 LINE L2 -786 2527 2005 621 259 12 93 chr6 49624714 49624944 -132790298 + L1ME4a LINE L1 5592 5788 -333 2597 76 0 0 chr6 49624944 49625248 -132789994 - AluSc SINE Alu -5 304 1 621 259 12 93 chr6 49625248 49625349 -132789893 + L1ME4a LINE L1 5788 5896 -225 326 212 81 40 chr6 49625371 49625470 -132789772 - LTR33A LTR ERVL 0 523 421 1091 170 10 10 chr6 49625859 49626053 -132789189 + MLT1L LTR MaLR 1 194 -432 1082 298 105 40 chr6 49628255 49629695 -132785547 + L1MC4a LINE L1 4029 5374 -772 2260 94 0 7 chr6 49629695 49630013 -132785229 - AluSq SINE Alu 0 316 1 1082 298 105 40 chr6 49630013 49630043 -132785199 + L1MC4a LINE L1 5374 5216 -930 1989 132 10 3 chr6 49630043 49630356 -132784886 + AluSg SINE Alu 1 315 0 1082 298 105 40 chr6 49630356 49630559 -132784683 + L1MC4a LINE L1 5215 5403 -743 696 164 0 50 chr6 49630559 49630699 -132784543 + FLAM_C SINE Alu 1 133 0 1189 279 35 18 chr6 49632069 49632464 -132782778 + MLT1L LTR MaLR 196 597 -18 335 205 17 60 chr6 49632732 49632849 -132782393 + L1M4 LINE L1 5688 5799 -385 511 233 70 35 chr6 49633414 49633586 -132781656 + MER112 DNA MER1_type 23 200 -60 494 242 211 4 chr6 49633593 49633698 -132781544 + MER5C DNA MER1_type 51 133 -191 2106 127 3 3 chr6 49633698 49633997 -132781245 + AluSq SINE Alu 1 299 -14 494 242 211 4 chr6 49633997 49634054 -132781188 + MER5C DNA MER1_type 133 177 -147 2177 117 0 3 chr6 49634054 49634345 -132780897 - AluSx SINE Alu -22 290 1 494 242 211 4 chr6 49634345 49634408 -132780834 + MER5C DNA MER1_type 177 324 0 485 245 105 14 chr6 49635339 49635482 -132779760 + MIR SINE MIR 59 214 -48 289 296 4 39 chr6 49637751 49637945 -132777297 + GA-rich Low_complexity Low_complexity 1 187 0 186 286 0 0 chr6 49638203 49638259 -132776983 + L3b LINE CR1 1342 1397 -186 300 280 120 0 chr6 49638628 49638728 -132776514 + L2 LINE L2 2935 3046 -267 2494 73 0 3 chr6 49640268 49640568 -132774674 + AluY SINE Alu 1 299 -12 2409 83 0 32 chr6 49640597 49640909 -132774333 - AluSx SINE Alu -10 302 1 186 43 0 0 chr6 49641553 49641576 -132773666 + (GGGGA)n Simple_repeat Simple_repeat 5 27 0 681 271 15 5 chr6 49642574 49642777 -132772465 - MIR SINE MIR -13 249 45 430 213 0 43 chr6 49643611 49643799 -132771443 + (CA)n Simple_repeat Simple_repeat 1 180 0 546 228 0 0 chr6 49643817 49644061 -132771181 + (CA)n Simple_repeat Simple_repeat 1 244 0 332 264 6 0 chr6 49644109 49644272 -132770970 + (CA)n Simple_repeat Simple_repeat 1 164 0 450 244 0 9 chr6 49644288 49644637 -132770605 + (CA)n Simple_repeat Simple_repeat 1 345 0 375 274 6 30 chr6 49644639 49644803 -132770439 + (CATATA)n Simple_repeat Simple_repeat 6 165 0 * 493 322 4 0 chr6 49644724 49645004 -132770238 + (CA)n Simple_repeat Simple_repeat 1 281 0 2389 99 3 0 chr6 49645521 49645825 -132769417 - AluSx SINE Alu -7 305 1 256 320 154 6 chr6 49646364 49646539 -132768703 + L2 LINE L2 2659 2859 -455 563 290 76 73 chr6 49646587 49646901 -132768341 + L2 LINE L2 2958 3272 0 242 310 85 41 chr6 49648067 49648231 -132767011 + MIR SINE MIR 39 214 -48 294 309 57 57 chr6 49648420 49648666 -132766576 + L2 LINE L2 2838 3083 -189 517 273 98 27 chr6 49648759 49648942 -132766300 - MIR SINE MIR -52 210 15 299 244 37 12 chr6 49648953 49649035 -132766207 + L2 LINE L2 3178 3261 -11 291 263 20 50 chr6 49649381 49649480 -132765762 - MIR3 SINE MIR -17 191 96 224 303 0 30 chr6 49650748 49650880 -132764362 + G-rich Low_complexity Low_complexity 1 128 0 228 320 58 29 chr6 49651442 49651545 -132763697 + L2 LINE L2 3182 3287 -26 281 309 21 41 chr6 49651975 49652072 -132763170 + LTR67 LTR ERVL 100 194 -363 333 0 0 0 chr6 49652122 49652159 -132763083 + (TTG)n Simple_repeat Simple_repeat 2 38 0 495 318 37 5 chr6 49652319 49652508 -132762734 + LTR67 LTR ERVL 363 557 0 666 295 6 6 chr6 49653063 49653246 -132761996 + MER117 DNA MER1_type 1 183 -14 207 271 102 0 chr6 49653665 49653724 -132761518 + L2 LINE L2 3228 3292 -21 609 243 152 19 chr6 49654654 49654871 -132760371 + MIR SINE MIR 19 262 0 2290 112 0 3 chr6 49655094 49655406 -132759836 - AluY SINE Alu 0 311 1 506 309 129 14 chr6 49655427 49655637 -132759605 - MIR SINE MIR -9 253 20 244 349 30 15 chr6 49655647 49655779 -132759463 + MER5A DNA MER1_type 11 144 -45 201 182 0 0 chr6 49657360 49657393 -132757849 + (TG)n Simple_repeat Simple_repeat 2 34 0 501 191 64 0 chr6 49658771 49658881 -132756361 + MIR SINE MIR 77 193 -69 1023 194 289 44 chr6 49659097 49659464 -132755778 + MLT1J LTR MaLR 1 457 -54 525 32 0 0 chr6 49659654 49659717 -132755525 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 426 288 39 26 chr6 49660010 49660163 -132755079 + MIR SINE MIR 108 262 0 198 326 54 0 chr6 49660810 49660902 -132754340 + L3b LINE CR1 1291 1387 -196 433 271 84 19 chr6 49661102 49661257 -132753985 + MIR SINE MIR 88 252 -10 299 252 187 9 chr6 49661986 49662093 -132753149 - MIR3 SINE MIR -8 200 75 573 226 103 46 chr6 49662935 49663130 -132752112 - MIR SINE MIR -44 218 13 205 291 88 5 chr6 49663177 49663299 -132751943 + MIR SINE MIR 18 153 -63 279 267 69 0 chr6 49663711 49663812 -132751430 + MIR SINE MIR 36 143 -65 219 265 0 0 chr6 49664243 49664292 -132750950 - L2 LINE L2 -85 3187 3139 184 231 39 0 chr6 49665824 49665876 -132749366 + L2 LINE L2 3133 3186 -86 219 288 27 108 chr6 49666235 49666346 -132748896 + L2 LINE L2 3122 3223 -49 2378 100 35 72 chr6 49668410 49668839 -132746403 - L1MB3 LINE L1 -9 6174 5762 933 101 0 0 chr6 49668867 49668996 -132746246 - AluSg/x SINE Alu -12 300 172 585 215 37 74 chr6 49669202 49669325 -132745917 - MER5A DNA MER1_type 0 189 72 1618 124 110 0 chr6 49669325 49669598 -132745644 - AluJb SINE Alu -9 303 1 585 215 37 74 chr6 49669598 49669637 -132745605 - MER5A DNA MER1_type -117 72 33 601 307 110 26 chr6 49669708 49670310 -132744932 - L1MC4a LINE L1 -337 5825 5275 791 179 0 0 chr6 49670310 49670433 -132744809 - FLAM_A SINE Alu -7 126 4 601 307 110 26 chr6 49670433 49670956 -132744286 - L1MC4a LINE L1 -887 5275 4624 334 266 201 0 chr6 49671612 49671751 -132743491 - MIR SINE MIR -31 231 65 204 229 29 0 chr6 49672743 49672813 -132742429 + (CG)n Simple_repeat Simple_repeat 2 73 0 200 35 35 0 chr6 49672888 49672917 -132742325 + (AGGGGG)n Simple_repeat Simple_repeat 4 33 0 205 180 0 60 chr6 49675403 49675453 -132739789 + G-rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr6 49676101 49676134 -132739108 + GC_rich Low_complexity Low_complexity 1 33 0 246 302 0 42 chr6 49677608 49677704 -132737538 + Charlie7 DNA MER1_type 2521 2612 0 228 271 19 65 chr6 49677730 49677837 -132737405 + L2 LINE L2 3170 3271 -1 428 327 75 0 chr6 49678222 49678381 -132736861 + MIR SINE MIR 77 247 -15 227 242 125 37 chr6 49679018 49679146 -132736096 - MIR SINE MIR -45 163 32 213 344 32 0 chr6 49679203 49679296 -132735946 + MIR SINE MIR 36 131 -77 438 268 43 18 chr6 49679326 49679490 -132735752 + MER5B DNA MER1_type 5 172 -6 2278 77 0 13 chr6 49679586 49679885 -132735357 - AluY SINE Alu -16 295 1 229 304 98 0 chr6 49680740 49680842 -132734400 - MIR3 SINE MIR -16 192 81 666 202 0 9 chr6 49681460 49681574 -132733668 + FLAM_C SINE Alu 5 117 -26 32 0 0 0 chr6 49681579 49681611 -132733631 + AT_rich Low_complexity Low_complexity 1 32 0 199 311 129 15 chr6 49681981 49682113 -132733129 - MIR3 SINE MIR -61 147 1 823 246 49 25 chr6 49682918 49683162 -132732080 + MIR SINE MIR 13 262 0 295 279 73 36 chr6 49683379 49683544 -132731698 - MIR3 SINE MIR -25 183 13 1389 155 8 24 chr6 49684420 49684672 -132730570 + AluJo SINE Alu 65 312 0 891 156 0 0 chr6 49684917 49685052 -132730190 - FRAM SINE Alu -42 134 1 1646 155 3 36 chr6 49685639 49685942 -132729300 + AluJo SINE Alu 1 293 -19 469 269 58 49 chr6 49685980 49686203 -132729039 + L1MC5 LINE L1 7701 7925 -36 205 234 0 0 chr6 49686690 49686737 -132728505 - MIR SINE MIR -101 107 61 1196 210 25 0 chr6 49687118 49687361 -132727881 - MIR SINE MIR 0 262 14 1930 169 0 0 chr6 49687597 49687910 -132727332 - AluSp SINE Alu 0 313 1 202 211 19 19 chr6 49687914 49687966 -132727276 - L3 LINE CR1 -907 670 619 996 130 11 51 chr6 49687989 49688166 -132727076 + AluJb SINE Alu 129 298 -14 495 242 17 25 chr6 49688330 49688450 -132726792 + MIR SINE MIR 63 181 -81 186 118 0 0 chr6 49688455 49688489 -132726753 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 303 260 52 0 chr6 49689121 49689198 -132726044 + MIR SINE MIR 180 260 -2 194 358 60 52 chr6 49689188 49689322 -132725920 + L2 LINE L2 3112 3246 -26 * 896 269 74 3 chr6 49689324 49689636 -132725606 - LTR16C LTR ERVL 0 491 158 290 211 13 13 chr6 49689950 49690026 -132725216 - MIR SINE MIR -20 242 167 3128 181 65 24 chr6 49690097 49690750 -132724492 + L1MB5 LINE L1 5387 6011 -163 1866 153 10 13 chr6 49690750 49691063 -132724179 - AluJb SINE Alu 0 312 1 3128 181 65 24 chr6 49691063 49691113 -132724129 + L1MB5 LINE L1 6011 6057 -117 1883 129 10 3 chr6 49691113 49691407 -132723835 + AluSx SINE Alu 1 296 -16 3128 181 65 24 chr6 49691407 49691424 -132723818 + L1MB5 LINE L1 6057 6138 -36 521 250 31 8 chr6 49691649 49691777 -132723465 + MIR SINE MIR 19 149 -113 2258 97 0 3 chr6 49692797 49693105 -132722137 + AluSp SINE Alu 3 309 -4 192 385 39 10 chr6 49693560 49693664 -132721578 - L2 LINE L2 -11 3261 3155 347 307 154 7 chr6 49693763 49694056 -132721186 - L2 LINE L2 -127 3186 2851 594 266 29 2 chr6 49694097 49694250 -132720992 - MIR SINE MIR -62 146 8 236 297 155 32 chr6 49694347 49694566 -132720676 - L2 LINE L2 -218 3054 2809 2076 109 3 0 chr6 49694796 49695079 -132720163 - AluSq SINE Alu -29 284 1 1485 154 86 11 chr6 49695117 49695396 -132719846 + AluSq SINE Alu 1 300 -13 373 238 349 0 chr6 49695621 49695793 -132719449 - MIR SINE MIR -9 253 22 297 0 0 0 chr6 49696445 49696478 -132718764 + (TA)n Simple_repeat Simple_repeat 2 34 0 276 173 133 13 chr6 49697149 49697224 -132718018 + MIR SINE MIR 71 154 -108 526 267 107 24 chr6 49697450 49697656 -132717586 - MIR SINE MIR 0 262 40 1921 128 6 40 chr6 49697911 49698232 -132717010 - AluSx SINE Alu -2 310 1 1697 162 48 0 chr6 49698299 49698589 -132716653 + AluSx SINE Alu 1 304 -8 474 275 96 24 chr6 49698607 49698841 -132716401 - L1MC4a LINE L1 -255 5907 5661 418 289 90 6 chr6 49699195 49699361 -132715881 + MIR SINE MIR 12 191 -71 366 308 15 0 chr6 49699671 49699801 -132715441 + (TG)n Simple_repeat Simple_repeat 2 133 0 248 153 333 0 chr6 49699971 49700043 -132715199 - L2 LINE L2 -9 3304 3209 437 316 51 71 chr6 49700642 49700838 -132714404 + MIR SINE MIR 60 251 -11 2262 100 10 0 chr6 49702458 49702767 -132712475 - AluSx SINE Alu 0 312 1 465 177 10 21 chr6 49703306 49703402 -132711840 - LTR33 LTR ERVL 0 521 427 553 144 29 0 chr6 49703510 49703614 -132711628 - LTR33 LTR ERVL -414 107 1 407 265 168 19 chr6 49704356 49704569 -132710673 + MIR SINE MIR 16 256 -6 2355 82 3 0 chr6 49704779 49705084 -132710158 + AluSp SINE Alu 1 306 -7 827 178 86 0 chr6 49705601 49705764 -132709478 - MER20 DNA MER1_type -7 212 36 181 333 16 0 chr6 49706113 49706176 -132709066 - L2 LINE L2 -52 3261 3198 1931 119 3 34 chr6 49706748 49706864 -132708378 + AluSq SINE Alu 1 119 -194 2367 66 0 7 chr6 49706864 49707165 -132708077 + AluY SINE Alu 1 299 -12 1931 119 3 34 chr6 49707165 49707341 -132707901 + AluSq SINE Alu 119 284 -29 241 300 57 0 chr6 49707357 49707427 -132707815 + MIR SINE MIR 16 89 -119 201 227 23 0 chr6 49709170 49709214 -132706028 - MIR SINE MIR -126 82 38 299 346 20 0 chr6 49710437 49710538 -132704704 + MIR SINE MIR 30 132 -76 473 338 173 9 chr6 49710556 49711184 -132704058 + L2 LINE L2 2275 3004 -268 659 203 45 23 chr6 49711197 49711374 -132703868 - L1ME3 LINE L1 -28 6134 5954 249 301 24 36 chr6 49711503 49711586 -132703656 + L2 LINE L2 3133 3214 -58 698 214 15 0 chr6 49711657 49711788 -132703454 - FLAM_A SINE Alu 0 133 1 1017 204 47 17 chr6 49711789 49712024 -132703218 - MIR SINE MIR -19 243 2 2352 94 0 0 chr6 49712103 49712412 -132702830 + AluSg SINE Alu 1 309 -1 2318 71 0 3 chr6 49713973 49714269 -132700973 - AluY SINE Alu -16 295 1 374 296 118 33 chr6 49714480 49714811 -132700431 + L2 LINE L2 2094 2452 -862 1489 168 3 74 chr6 49717028 49717338 -132697904 - AluJo SINE Alu -14 298 11 632 268 30 0 chr6 49717541 49717705 -132697537 + MIR SINE MIR 61 229 -33 390 269 28 69 chr6 49717744 49717889 -132697353 - MIR SINE MIR -120 142 4 814 268 30 17 chr6 49717969 49718044 -132697198 - MIR SINE MIR -10 252 179 2317 89 3 13 chr6 49718044 49718358 -132696884 + AluSp SINE Alu 1 311 -2 814 268 30 17 chr6 49718358 49718517 -132696725 - MIR SINE MIR -83 179 15 24 0 0 0 chr6 49718536 49718560 -132696682 + AT_rich Low_complexity Low_complexity 1 24 0 2097 99 3 20 chr6 49718602 49718904 -132696338 + AluSx SINE Alu 1 297 -15 189 176 39 20 chr6 49720071 49720122 -132695120 + L2 LINE L2 3262 3313 0 342 333 17 8 chr6 49720885 49721005 -132694237 + L2 LINE L2 3188 3308 -5 2061 117 10 0 chr6 49721019 49721317 -132693925 + AluSx SINE Alu 1 301 -11 2249 72 0 3 chr6 49721497 49721790 -132693452 - AluY SINE Alu -19 292 1 843 202 24 6 chr6 49723119 49723287 -132691955 + AluJo SINE Alu 121 291 -21 1773 130 32 29 chr6 49724781 49725089 -132690153 + AluSx SINE Alu 1 309 -3 454 251 256 5 chr6 49725573 49725776 -132689466 + MER112 DNA MER1_type 1 254 -6 793 138 17 0 chr6 49727150 49727266 -132687976 + AluJb SINE Alu 181 298 -14 369 247 96 34 chr6 49727490 49727636 -132687606 + MER103 DNA DNA 9 163 -3 1604 149 3 53 chr6 49727640 49727941 -132687301 - AluJo SINE Alu -25 287 2 423 238 9 19 chr6 49727999 49728104 -132687138 + L2 LINE L2 3210 3313 0 281 226 110 10 chr6 49728269 49728429 -132686813 + MIR SINE MIR 23 233 -29 1066 192 42 9 chr6 49728487 49728701 -132686541 + AluJb SINE Alu 72 292 -20 2183 119 3 0 chr6 49728780 49729090 -132686152 + AluSx SINE Alu 1 311 -1 520 230 66 33 chr6 49730869 49730972 -132684270 + MIR SINE MIR 37 135 -127 2203 98 7 0 chr6 49730972 49731268 -132683974 + AluSx SINE Alu 15 312 0 520 230 66 33 chr6 49731268 49731387 -132683855 + MIR SINE MIR 135 261 -1 537 264 190 0 chr6 49731658 49731874 -132683368 - MIR SINE MIR 0 262 6 765 231 181 0 chr6 49732058 49732274 -132682968 + MIR SINE MIR 8 262 0 637 123 0 53 chr6 49732285 49732301 -132682941 - AluJo/FRAM SINE Alu 0 312 297 1856 143 0 37 chr6 49732301 49732623 -132682619 - AluJo SINE Alu -2 310 1 637 123 0 53 chr6 49732623 49732720 -132682522 - AluJo/FRAM SINE Alu -15 297 205 180 0 0 0 chr6 49732760 49732780 -132682462 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 906 193 0 0 chr6 49732783 49732944 -132682298 - AluJb SINE Alu -18 294 134 2133 114 7 0 chr6 49732945 49733243 -132681999 - AluSx SINE Alu -12 300 1 771 136 8 0 chr6 49733243 49733368 -132681874 + LTR56 LTR ERV1 320 445 0 542 155 243 0 chr6 49733587 49733690 -132681552 - FLAM_A SINE Alu -5 128 1 1492 182 234 14 chr6 49734533 49734951 -132680291 - LTR10A LTR ERV1 -99 510 1 517 199 14 75 chr6 49734952 49735098 -132680144 - LTR10A-int LTR ERV1 -2 6647 6511 2104 122 0 10 chr6 49735215 49735526 -132679716 - AluSx SINE Alu -3 309 2 821 248 39 5 chr6 49736735 49736941 -132678301 - MIR SINE MIR -1 261 49 2031 92 68 0 chr6 49737421 49737702 -132677540 + AluSx SINE Alu 1 300 -12 796 91 5 51 chr6 49737948 49738179 -132677063 + (TG)n Simple_repeat Simple_repeat 1 220 0 3062 148 37 114 chr6 49739179 49739351 -132675891 - L1MD2 LINE L1 0 6359 6175 2160 98 10 3 chr6 49739351 49739657 -132675585 - AluSq SINE Alu -5 308 1 1890 155 0 0 chr6 49739657 49739953 -132675289 - AluJb SINE Alu -15 297 1 3062 148 37 114 chr6 49739953 49740231 -132675011 - L1MD2 LINE L1 -183 6176 5878 2170 118 0 0 chr6 49740231 49740537 -132674705 + AluSx SINE Alu 1 306 -6 3062 148 37 114 chr6 49740537 49740620 -132674622 - L1MD2 LINE L1 -481 5878 5790 893 149 0 15 chr6 49740620 49740754 -132674488 - FLAM_C SINE Alu 0 133 2 3062 148 37 114 chr6 49740754 49741024 -132674218 - L1MD2 LINE L1 -569 5790 5615 891 300 35 60 chr6 49741036 49741267 -132673975 - L2 LINE L2 -1 3312 3096 2073 125 0 3 chr6 49741267 49741580 -132673662 + AluSx SINE Alu 1 312 0 891 300 35 60 chr6 49741580 49741778 -132673464 - L2 LINE L2 -217 3096 2894 1927 143 0 0 chr6 49743152 49743445 -132671797 - AluSx SINE Alu -19 293 1 826 172 8 0 chr6 49743549 49743683 -132671559 - AluJo SINE Alu -177 135 1 3080 191 46 0 chr6 49744480 49745020 -132670222 + MLT1F1 LTR MaLR 1 565 -2 1595 164 3 39 chr6 49745995 49746306 -132668936 + AluJo SINE Alu 1 300 -12 1999 88 14 7 chr6 49746308 49746618 -132668624 + AluSq SINE Alu 1 312 0 946 175 52 52 chr6 49746625 49746661 -132668581 + L1MB8 LINE L1 5873 5908 -270 2234 99 0 0 chr6 49746661 49746964 -132668278 + AluSg SINE Alu 1 303 -7 946 175 52 52 chr6 49746964 49747179 -132668063 + L1MB8 LINE L1 5907 6124 -54 1799 170 0 19 chr6 49747290 49747601 -132667641 - AluJo SINE Alu -7 305 1 410 115 0 0 chr6 49747602 49747663 -132667579 + L1MB8 LINE L1 6112 6172 -6 2235 108 3 0 chr6 49747707 49748012 -132667230 - AluSx SINE Alu -6 306 1 228 293 50 10 chr6 49748778 49748877 -132666365 - MIR SINE MIR -83 179 77 1756 158 3 7 chr6 49750046 49750366 -132664876 + AluSx SINE Alu 7 312 0 404 263 131 7 chr6 49750910 49751047 -132664195 + L2 LINE L2 3143 3296 -17 749 153 0 0 chr6 49751051 49751162 -132664080 - AluJo/FRAM SINE Alu -24 288 178 1113 176 0 38 chr6 49751163 49751401 -132663841 + AluJb SINE Alu 80 308 -4 586 304 0 12 chr6 49751524 49751685 -132663557 - MIR SINE MIR 0 262 104 425 264 119 6 chr6 49751998 49752157 -132663085 + MIR SINE MIR 76 252 -10 378 0 0 0 chr6 49752818 49752860 -132662382 + (TG)n Simple_repeat Simple_repeat 2 43 0 1101 204 5 23 chr6 49753085 49753305 -132661937 + MER20 DNA MER1_type 1 216 -3 2173 112 0 13 chr6 49753733 49754045 -132661197 + AluSx SINE Alu 5 312 0 1465 133 89 27 chr6 49754180 49754473 -132660769 - MER44D DNA MER2_type 0 609 29 207 0 0 0 chr6 49754573 49754596 -132660646 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2338 62 0 0 chr6 49754604 49754893 -132660349 - AluY SINE Alu -22 289 1 1019 126 33 65 chr6 49754915 49755079 -132660163 - L1MA8 LINE L1 0 6291 6134 2184 91 3 3 chr6 49755079 49755376 -132659866 - AluSx SINE Alu -15 297 1 1019 126 33 65 chr6 49755376 49755425 -132659817 - L1MA8 LINE L1 -157 6134 6085 33 43 0 0 chr6 49755484 49755531 -132659711 + AT_rich Low_complexity Low_complexity 1 47 0 377 129 81 0 chr6 49755531 49755593 -132659649 - FLAM SINE Alu -3 130 64 1090 139 96 24 chr6 49756787 49756996 -132658246 - MLT1C LTR MaLR -243 224 1 273 211 91 72 chr6 49757209 49757330 -132657912 + MIR SINE MIR 22 153 -67 703 237 69 0 chr6 49757339 49757512 -132657730 - MIR SINE MIR -26 236 52 2336 82 7 0 chr6 49757525 49757829 -132657413 - AluSq SINE Alu -7 306 1 236 322 0 46 chr6 49758767 49758854 -132656388 - MIR SINE MIR -109 99 17 2269 100 0 0 chr6 49758936 49759236 -132656006 - AluSx SINE Alu -11 301 2 183 167 0 0 chr6 49759735 49759777 -132655465 + A-rich Low_complexity Low_complexity 1 42 0 215 263 136 17 chr6 49762984 49763102 -132652140 - MIR3 SINE MIR -2 206 75 551 275 196 5 chr6 49765585 49765774 -132649468 - MIR SINE MIR -2 260 36 560 185 92 92 chr6 49767074 49767113 -132648129 - MIR SINE MIR -18 244 206 1752 163 3 0 chr6 49767113 49767407 -132647835 - AluJb SINE Alu -16 296 2 560 185 92 92 chr6 49767407 49767540 -132647702 - MIR SINE MIR -55 207 72 188 268 0 0 chr6 49768040 49768081 -132647161 - L3b LINE CR1 -201 1382 1342 2344 83 0 0 chr6 49768499 49768800 -132646442 + AluSx SINE Alu 1 301 -11 672 193 0 0 chr6 49769480 49769594 -132645648 - FLAM_C SINE Alu -17 116 3 2022 128 0 34 chr6 49769631 49769952 -132645290 - AluSx SINE Alu -2 310 1 2166 114 0 0 chr6 49769959 49770256 -132644986 - AluSg SINE Alu -13 297 1 26 23 0 23 chr6 49770328 49770353 -132644889 + AT_rich Low_complexity Low_complexity 1 26 -17 1791 134 0 30 chr6 49770353 49770652 -132644590 + AluJo SINE Alu 1 290 -22 26 23 0 23 chr6 49770652 49770670 -132644572 + AT_rich Low_complexity Low_complexity 26 43 0 278 330 34 0 chr6 49771025 49771113 -132644129 + L2 LINE L2 3182 3272 0 231 287 148 9 chr6 49771244 49771352 -132643890 + L2 LINE L2 3190 3312 -1 710 268 67 25 chr6 49771369 49771653 -132643589 + L2 LINE L2 3005 3300 -13 239 0 0 31 chr6 49771657 49771689 -132643553 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1408 192 74 0 chr6 49772237 49772508 -132642734 - AluJb SINE Alu -21 291 1 1544 88 8 80 chr6 49772710 49772959 -132642283 - AluSg/x SINE Alu -13 297 67 885 142 0 8 chr6 49772972 49773106 -132642136 - FLAM_C SINE Alu 0 133 1 1960 109 10 23 chr6 49773113 49773415 -132641827 - AluJo SINE Alu -14 298 1 413 250 86 0 chr6 49774672 49774800 -132640442 - MIR SINE MIR -76 186 48 375 282 15 50 chr6 49775124 49775408 -132639834 + GA-rich Low_complexity Low_complexity 1 273 0 2289 94 0 3 chr6 49776426 49776735 -132638507 + AluSx SINE Alu 1 308 -4 294 244 35 104 chr6 49777141 49777256 -132637986 - MER102a DNA MER1_type -28 302 196 2314 52 3 0 chr6 49777360 49777649 -132637593 - AluY SINE Alu -9 302 13 447 246 120 7 chr6 49781358 49781500 -132633742 - MIR SINE MIR -57 205 48 282 256 68 45 chr6 49782240 49782373 -132632869 - MIR SINE MIR -109 153 18 1835 106 3 27 chr6 49784011 49784312 -132630930 - AluSc SINE Alu -15 294 1 1366 288 72 24 chr6 49786075 49786659 -132628583 + L1ME1 LINE L1 5524 6135 -29 265 242 2 0 chr6 49787160 49787245 -132627997 - L1 LINE L1 -2401 3745 3661 1271 208 75 100 chr6 49787399 49787850 -132627392 + MER66B LTR ERV1 1 440 -46 1566 265 61 15 chr6 49788217 49788678 -132626564 + MER66-int LTR ERV1 339 820 -5856 3017 105 43 2 chr6 49790017 49790455 -132624787 + L1PA8 LINE L1 5711 6166 -6 2153 103 0 6 chr6 49790800 49791112 -132624130 + AluSq SINE Alu 1 310 -3 613 213 128 66 chr6 49792031 49792304 -132622938 - LTR48B LTR ERV1 -4 640 406 351 243 14 0 chr6 49792603 49792677 -132622565 - Tigger2 DNA MER2_type 0 2718 2644 476 223 23 31 chr6 49792716 49792846 -132622396 + MLT1A1 LTR MaLR 235 363 -2 390 291 102 24 chr6 49792846 49793052 -132622190 + LTR16C LTR ERVL 186 407 -84 1418 174 119 3 chr6 49793273 49793567 -132621675 + MER4D LTR ERV1 4 331 -572 27 0 0 0 chr6 49793696 49793723 -132621519 + AT_rich Low_complexity Low_complexity 1 27 0 2156 60 0 0 chr6 49793738 49794006 -132621236 + AluY SINE Alu 30 297 -14 33 0 0 0 chr6 49795171 49795204 -132620038 + AT_rich Low_complexity Low_complexity 1 33 0 1642 112 0 0 chr6 49795580 49795804 -132619438 + AluSx SINE Alu 64 287 -25 445 313 134 14 chr6 49795900 49796117 -132619125 + MIR SINE MIR 20 262 0 433 331 51 11 chr6 49796295 49796470 -132618772 - MER5A DNA MER1_type 0 189 8 2281 88 3 0 chr6 49796481 49796777 -132618465 + AluSq SINE Alu 1 297 -16 482 272 87 58 chr6 49797188 49797530 -132617712 + MLT1I LTR MaLR 67 409 0 2021 116 30 0 chr6 49797816 49798192 -132617050 + AluSx SINE Alu 1 385 0 1920 203 87 30 chr6 49798329 49798924 -132616318 + L1MC5 LINE L1 7297 7925 -36 763 162 11 17 chr6 49799131 49799310 -132615932 + GA-rich Low_complexity Low_complexity 3 180 0 1604 156 3 42 chr6 49799460 49799767 -132615475 + AluJb SINE Alu 1 295 -17 2288 65 7 0 chr6 49799769 49800062 -132615180 + AluSp SINE Alu 2 296 -17 193 286 0 0 chr6 49801587 49801643 -132613599 + MIR SINE MIR 80 135 -127 420 272 40 16 chr6 49801743 49801868 -132613374 + MIR SINE MIR 20 147 -115 201 273 0 0 chr6 49801959 49802003 -132613239 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 733 168 0 0 chr6 49802646 49802759 -132612483 + AluSq/x SINE Alu 10 122 -190 3335 128 19 63 chr6 49802775 49803035 -132612207 + L1MB4 LINE L1 5572 5842 -338 1880 145 24 0 chr6 49803035 49803332 -132611910 + AluJb SINE Alu 1 304 -8 3335 128 19 63 chr6 49803332 49803647 -132611595 + L1MB4 LINE L1 5842 6119 -61 1423 173 17 67 chr6 49803647 49803947 -132611295 + AluJb SINE Alu 4 288 -24 3335 128 19 63 chr6 49803947 49804001 -132611241 + L1MB4 LINE L1 6119 6174 -6 1743 151 30 43 chr6 49804004 49804375 -132610867 + L1MB8 LINE L1 5813 6178 0 243 322 11 33 chr6 49804996 49805086 -132610156 - MLT1K LTR MaLR -304 284 197 295 143 20 0 chr6 49805151 49805200 -132610042 + FLAM SINE Alu 72 121 -12 1854 135 4 0 chr6 49805223 49805531 -132609711 + AluSq SINE Alu 1 309 0 671 334 127 32 chr6 49805652 49805967 -132609275 - L2 LINE L2 -337 2977 2693 1969 245 65 26 chr6 49805967 49806535 -132608707 + MLT1E LTR MaLR 1 590 -3 671 334 127 32 chr6 49806535 49806899 -132608343 - L2 LINE L2 -621 2693 2234 351 312 9 0 chr6 49807229 49807338 -132607904 + L1MC1 LINE L1 5616 5725 -396 3495 127 16 16 chr6 49807487 49807793 -132607449 + L1MC1 LINE L1 5742 6050 -283 1521 170 54 20 chr6 49807793 49808087 -132607155 + AluJb SINE Alu 2 305 -7 3495 127 16 16 chr6 49808087 49808354 -132606888 + L1MC1 LINE L1 6049 6315 -18 532 218 109 109 chr6 49808380 49808530 -132606712 + L1ME4a LINE L1 5880 6029 -92 1526 143 72 4 chr6 49808530 49808835 -132606407 - AluJo SINE Alu 0 323 1 2411 62 0 3 chr6 49808842 49809149 -132606093 - AluY SINE Alu -5 306 1 532 218 109 109 chr6 49809149 49809228 -132606014 + L1ME4a LINE L1 6034 6118 -3 757 231 5 21 chr6 49809338 49809524 -132605718 + AluJo SINE Alu 119 301 -11 1222 214 40 0 chr6 49809711 49809959 -132605283 - MIR SINE MIR -2 260 3 700 303 19 42 chr6 49810267 49810459 -132604783 - MIR SINE MIR -3 259 73 1903 116 19 53 chr6 49810459 49810778 -132604464 + AluSx SINE Alu 1 308 -4 700 303 19 42 chr6 49810778 49810849 -132604393 - MIR SINE MIR -189 73 2 350 94 0 19 chr6 49811074 49811127 -132604115 + L2 LINE L2 3220 3271 -1 1165 140 0 83 chr6 49811498 49811726 -132603516 + MER2 DNA MER2_type 2 210 -135 2124 123 3 0 chr6 49811753 49812061 -132603181 - AluSx SINE Alu -1 311 3 244 308 0 0 chr6 49812069 49812134 -132603108 + MER2 DNA MER2_type 269 333 -12 582 294 0 14 chr6 49812372 49812518 -132602724 + MER5A DNA MER1_type 7 150 -39 263 281 173 14 chr6 49812652 49812791 -132602451 + MER5A DNA MER1_type 29 189 0 710 237 120 25 chr6 49812951 49813225 -132602017 + L1ME LINE L1 2724 3023 -3123 1570 194 58 30 chr6 49813227 49813588 -132601654 - HsTC2 DNA Tc2 2 1900 1348 1915 76 30 110 chr6 49813588 49813755 -132601487 - AluSg SINE Alu -2 308 178 1962 117 0 0 chr6 49813755 49814037 -132601205 - AluSx SINE Alu -11 301 20 1915 76 30 110 chr6 49814037 49814197 -132601045 - AluSg SINE Alu -132 178 7 1570 194 58 30 chr6 49814197 49814267 -132600975 - HsTC2 DNA Tc2 -550 1348 1281 349 291 54 47 chr6 49814389 49814537 -132600705 + L1ME LINE L1 3030 3178 -2968 1912 104 4 11 chr6 49814618 49814896 -132600346 + AluSx SINE Alu 23 298 -14 317 138 0 0 chr6 49814841 49814899 -132600343 + Alu SINE Alu 243 300 -1 304 274 0 0 chr6 49814952 49815014 -132600228 - MIR SINE MIR -123 139 78 972 315 97 46 chr6 49815021 49815525 -132599717 + L1ME LINE L1 4728 5205 -941 4866 56 12 3 chr6 49815525 49816128 -132599114 - L1PA7 LINE L1 -3 6151 5544 972 315 97 46 chr6 49816128 49816221 -132599021 + L1ME LINE L1 5205 5292 -854 1692 205 7 0 chr6 49816221 49816523 -132598719 + AluJb SINE Alu 1 304 -8 972 315 97 46 chr6 49816523 49816550 -132598692 + L1ME LINE L1 5292 5385 -761 1655 155 59 35 chr6 49816609 49816899 -132598343 - AluJb SINE Alu -15 297 1 396 251 83 67 chr6 49816954 49817142 -132598100 + L1ME LINE L1 5478 5671 -450 297 0 0 0 chr6 49818481 49818514 -132596728 + (CA)n Simple_repeat Simple_repeat 1 33 0 230 177 0 0 chr6 49820900 49820962 -132594280 - L1ME4a LINE L1 0 6121 6060 534 253 146 4 chr6 49821017 49821451 -132593791 - MLT1G3 LTR MaLR -9 586 4 432 51 0 0 chr6 49821591 49821650 -132593592 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1979 113 16 52 chr6 49821691 49822001 -132593241 + AluSx SINE Alu 1 299 -13 1201 189 105 43 chr6 49822001 49822324 -132592918 - MER2 DNA MER2_type -2 343 1 637 165 9 9 chr6 49822472 49822581 -132592661 + L2 LINE L2 3205 3313 0 186 133 0 0 chr6 49822584 49822614 -132592628 + (TGGG)n Simple_repeat Simple_repeat 3 32 0 383 277 53 0 chr6 49824475 49824569 -132590673 - L2 LINE L2 -15 3257 3159 518 283 80 5 chr6 49824590 49824777 -132590465 - MIR SINE MIR -55 207 7 861 280 133 34 chr6 49825181 49825646 -132589596 + LTR33 LTR ERVL 1 511 -10 191 271 0 94 chr6 49825722 49825807 -132589435 - L2 LINE L2 -817 2497 2421 883 260 57 0 chr6 49826189 49826416 -132588826 + MIR SINE MIR 23 262 0 1487 91 0 5 chr6 49827327 49827514 -132587728 + AluSx SINE Alu 1 186 -126 2267 93 3 3 chr6 49827543 49827833 -132587409 - AluSx SINE Alu -22 290 1 814 181 0 0 chr6 49827934 49828067 -132587175 + FLAM_A SINE Alu 6 138 -4 431 263 105 13 chr6 49828090 49828242 -132587000 - MIR SINE MIR -13 249 84 338 188 31 113 chr6 49828779 49828908 -132586334 - MLT1J LTR MaLR 0 580 454 477 239 12 36 chr6 49829059 49829229 -132586013 - MLT1H LTR MaLR -226 208 52 1240 142 36 0 chr6 49830255 49830480 -132584762 + L1MB3 LINE L1 5911 6143 -40 1164 105 12 6 chr6 49830481 49830653 -132584589 + AluSg/x SINE Alu 137 309 -3 284 185 108 0 chr6 49830730 49830795 -132584447 + L1ME3A LINE L1 6094 6165 -5 2328 119 0 0 chr6 49830849 49831161 -132584081 + AluSx SINE Alu 1 312 0 193 229 14 14 chr6 49831611 49831637 -132583605 + (TA)n Simple_repeat Simple_repeat 1 26 -44 1903 158 79 3 chr6 49831637 49831680 -132583562 - THE1A LTR MaLR 0 355 317 2226 84 0 43 chr6 49831680 49831979 -132583263 + AluSc SINE Alu 1 286 -23 1903 158 79 3 chr6 49831979 49832265 -132582977 - THE1A LTR MaLR -38 317 1 193 229 14 14 chr6 49832265 49832308 -132582934 + (TA)n Simple_repeat Simple_repeat 25 70 0 330 297 195 43 chr6 49833192 49833495 -132581747 + L2 LINE L2 2924 3272 0 521 298 156 7 chr6 49833746 49833895 -132581347 - MLT1J LTR MaLR -57 454 329 8547 46 7 0 chr6 49833895 49834857 -132580385 + LTR5 LTR ERVK 1 969 0 521 298 156 7 chr6 49834857 49835002 -132580240 - MLT1J LTR MaLR -182 329 116 1126 216 81 0 chr6 49835061 49835297 -132579945 + MIR SINE MIR 8 262 0 466 321 93 39 chr6 49836224 49836401 -132578841 - L1MC4a LINE L1 -1607 6201 6035 2257 121 7 0 chr6 49836401 49836707 -132578535 - AluSq SINE Alu -4 309 2 466 321 93 39 chr6 49836707 49836893 -132578349 - L1MC4a LINE L1 -1773 6035 5818 1858 165 3 3 chr6 49837209 49837506 -132577736 + AluSx SINE Alu 1 297 -15 2150 126 0 19 chr6 49837510 49837828 -132577414 + AluSx SINE Alu 1 312 0 1576 215 3 0 chr6 49837892 49838200 -132577042 + AluJo SINE Alu 1 309 0 2008 145 3 3 chr6 49838224 49838521 -132576721 + AluJb SINE Alu 1 297 -15 1537 185 25 0 chr6 49838542 49838861 -132576381 - L1ME2 LINE L1 -226 5938 5612 349 279 0 26 chr6 49838859 49839013 -132576229 - L1MEc LINE L1 -4139 2257 2108 * 2219 111 0 3 chr6 49839015 49839304 -132575938 - AluSx SINE Alu -15 297 10 1990 160 3 0 chr6 49839346 49839640 -132575602 + AluJb SINE Alu 1 295 -17 2659 151 35 4 chr6 49839680 49840138 -132575104 - L1MB5 LINE L1 0 6174 5703 1348 146 90 84 chr6 49840171 49840274 -132574968 - Charlie1 DNA MER1_type 0 2761 2660 2465 92 7 0 chr6 49840274 49840580 -132574662 + AluSx SINE Alu 1 308 -4 1348 146 90 84 chr6 49840580 49840782 -132574460 - Charlie1 DNA MER1_type -101 2660 2461 2289 107 7 3 chr6 49840782 49841091 -132574151 - AluSx SINE Alu -2 310 1 1348 146 90 84 chr6 49841091 49841273 -132573969 - Charlie1 DNA MER1_type -300 2461 1 866 286 88 29 chr6 49841279 49841458 -132573784 - L1MEc LINE L1 -4338 2058 1891 1938 151 3 7 chr6 49841458 49841756 -132573486 - AluJb SINE Alu -15 297 1 866 286 88 29 chr6 49841756 49842096 -132573146 - L1MEc LINE L1 -4505 1891 1508 838 333 159 12 chr6 49842363 49842734 -132572508 + L2 LINE L2 1043 1358 -1956 2226 100 0 0 chr6 49842734 49843015 -132572227 - AluSx SINE Alu -8 304 24 838 333 159 12 chr6 49843015 49843223 -132572019 + L2 LINE L2 1358 1707 -1607 491 118 0 0 chr6 49843255 49843323 -132571919 + AluSp/q SINE Alu 194 261 -52 1063 289 69 29 chr6 49843327 49843776 -132571466 + L2 LINE L2 2283 2749 -565 2305 226 48 79 chr6 49843812 49844739 -132570503 + L1MC5 LINE L1 6633 7531 -430 2401 101 0 0 chr6 49844825 49845121 -132570121 + AluSq SINE Alu 1 296 -17 261 250 16 65 chr6 49845138 49845262 -132569980 + L1ME3A LINE L1 5965 6082 -88 508 143 22 0 chr6 49845360 49845451 -132569791 - MER58 DNA MER1_type 0 2420 2328 3091 68 49 0 chr6 49845451 49845836 -132569406 - SVA Other Other -2 1384 981 509 191 0 11 chr6 49845875 49845969 -132569273 + AluJo SINE Alu 42 134 -178 456 209 182 27 chr6 49846417 49846565 -132568677 + MER5A DNA MER1_type 9 179 -10 1922 153 0 31 chr6 49847434 49847793 -132567449 + L1MB8 LINE L1 5831 6178 0 2113 123 17 0 chr6 49847982 49848274 -132566968 + AluSp SINE Alu 1 297 -16 373 114 0 100 chr6 49849049 49849119 -132566123 + L2 LINE L2 3251 3313 0 296 24 24 0 chr6 49849167 49849208 -132566034 + (CA)n Simple_repeat Simple_repeat 2 43 0 459 227 92 34 chr6 49849281 49849400 -132565842 + L2 LINE L2 3188 3313 0 258 171 0 0 chr6 49849398 49849439 -132565803 - L2 LINE L2 -23 3290 3250 * 218 286 0 0 chr6 49850189 49850238 -132565004 + MIR SINE MIR 99 147 -61 222 229 0 82 chr6 49850973 49851034 -132564208 + L2 LINE L2 3142 3197 -75 213 297 187 7 chr6 49851103 49851258 -132563984 - L2 LINE L2 -205 3067 2885 294 279 0 0 chr6 49851992 49852071 -132563171 - MIR SINE MIR -1 261 183 229 240 164 29 chr6 49852084 49852188 -132563054 + MIR3 SINE MIR 85 202 -6 741 276 141 40 chr6 49852802 49853150 -132562092 - L2 LINE L2 -1 3312 2930 478 304 44 13 chr6 49853153 49853311 -132561931 - L2 LINE L2 -806 2508 2346 830 327 77 41 chr6 49853354 49853436 -132561806 - L2 LINE L2 -387 2927 2849 1528 223 151 16 chr6 49853436 49853920 -132561322 - MLT1H LTR MaLR 0 549 1 830 327 77 41 chr6 49853920 49854003 -132561239 - L2 LINE L2 -465 2849 2770 2143 131 0 7 chr6 49854003 49854308 -132560934 + AluSx SINE Alu 1 303 -9 830 327 77 41 chr6 49854308 49854347 -132560895 - L2 LINE L2 -544 2770 2734 2294 93 0 13 chr6 49854347 49854649 -132560593 - AluSq SINE Alu -15 298 1 830 327 77 41 chr6 49854649 49855004 -132560238 - L2 LINE L2 -580 2734 2346 417 321 116 5 chr6 49855077 49855292 -132559950 + MIR SINE MIR 12 250 -12 362 274 96 7 chr6 49858807 49858942 -132556300 + MIR3 SINE MIR 44 190 -18 365 212 0 0 chr6 49859335 49859401 -132555841 - L2 LINE L2 -16 3297 3232 2290 106 0 0 chr6 49862630 49862922 -132552320 + AluY SINE Alu 1 292 -19 592 253 165 7 chr6 49863273 49863363 -132551879 - L2 LINE L2 -61 3252 3178 1391 161 33 72 chr6 49863363 49863667 -132551575 + AluJo SINE Alu 1 292 -20 592 253 165 7 chr6 49863667 49863861 -132551381 - L2 LINE L2 -135 3178 2923 431 291 79 30 chr6 49866765 49866968 -132548274 + MIR SINE MIR 2 214 -48 732 284 42 28 chr6 49866978 49867193 -132548049 - MIR SINE MIR -1 261 44 1950 127 0 79 chr6 49868149 49868489 -132546753 - AluSq SINE Alu 0 313 1 2319 85 3 0 chr6 49868901 49869196 -132546046 + AluSp SINE Alu 1 296 -17 326 255 120 65 chr6 49869532 49869716 -132545526 + MIR SINE MIR 7 192 -62 880 154 0 0 chr6 49869720 49869850 -132545392 - FLAM_C SINE Alu -1 132 3 216 0 0 0 chr6 49869852 49869876 -132545366 + (T)n Simple_repeat Simple_repeat 1 24 0 318 320 131 58 chr6 49870633 49871339 -132543903 - L2 LINE L2 -47 3225 2418 194 346 23 38 chr6 49871516 49871649 -132543593 - L2 LINE L2 -1152 2162 2032 532 223 36 14 chr6 49872841 49872980 -132542262 - MIR SINE MIR -78 184 43 701 164 20 94 chr6 49873722 49873846 -132541396 + Charlie5 DNA MER1_type 2360 2492 -93 2193 85 31 0 chr6 49873846 49874140 -132541102 + AluSq SINE Alu 1 303 -10 701 164 20 94 chr6 49874140 49874158 -132541084 + Charlie5 DNA MER1_type 2492 2510 -75 2179 135 0 0 chr6 49874158 49874470 -132540772 - AluSx SINE Alu 0 312 1 701 164 20 94 chr6 49874470 49874570 -132540672 + Charlie5 DNA MER1_type 2510 2585 0 587 273 53 68 chr6 49874703 49874967 -132540275 + MIR SINE MIR 2 261 -1 468 322 55 0 chr6 49874998 49875144 -132540098 - MIR SINE MIR -31 231 78 404 170 87 170 chr6 49876102 49876320 -132538922 + L2 LINE L2 3114 3313 0 316 326 171 0 chr6 49877424 49877553 -132537689 - L2 LINE L2 -5 3267 3117 387 102 0 0 chr6 49877578 49877637 -132537605 + MER53 DNA DNA 1 59 -130 838 173 0 14 chr6 49877641 49877780 -132537462 + FRAM SINE Alu 16 152 -24 479 132 198 8 chr6 49877781 49877902 -132537340 + MER53 DNA DNA 46 189 0 1106 326 218 23 chr6 49877972 49879636 -132535606 - L2 LINE L2 -261 3052 1046 305 307 92 68 chr6 49879884 49880080 -132535162 + MIR SINE MIR 1 205 -57 2524 68 0 0 chr6 49880080 49880391 -132534851 + AluY SINE Alu 1 311 0 305 307 92 68 chr6 49880391 49880448 -132534794 + MIR SINE MIR 205 259 -3 331 251 37 78 chr6 49881250 49881438 -132533804 - MIR SINE MIR -62 146 19 398 263 142 5 chr6 49881446 49881497 -132533745 + MER112 DNA MER1_type 3 46 -214 2212 106 0 0 chr6 49881497 49881789 -132533453 + AluSx SINE Alu 1 292 -20 398 263 142 5 chr6 49881789 49881942 -132533300 + MER112 DNA MER1_type 46 235 -25 252 200 0 0 chr6 49882105 49882160 -132533082 + (CA)n Simple_repeat Simple_repeat 2 56 0 400 268 117 34 chr6 49882171 49882561 -132532681 - MLT1L LTR MaLR -11 604 156 360 183 162 96 chr6 49882565 49882762 -132532480 - MER112 DNA MER1_type -2 258 49 432 0 0 0 chr6 49883385 49883433 -132531809 + (CA)n Simple_repeat Simple_repeat 2 49 0 222 62 0 0 chr6 49884279 49884311 -132530931 + (TG)n Simple_repeat Simple_repeat 2 33 0 33 43 0 0 chr6 49886942 49886989 -132528253 + GC_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr6 49887079 49887101 -132528141 + GC_rich Low_complexity Low_complexity 1 22 0 2482 68 0 0 chr6 49888034 49888345 -132526897 - AluY SINE Alu 0 311 1 225 345 124 12 chr6 49888780 49888944 -132526298 + MIR SINE MIR 30 208 -54 1331 177 102 25 chr6 49888966 49889249 -132525993 - AluJb SINE Alu -7 305 1 938 234 24 19 chr6 49889291 49889496 -132525746 + MIR SINE MIR 29 234 -28 247 312 104 0 chr6 49891075 49891200 -132524042 + L2 LINE L2 3127 3264 -8 252 0 0 0 chr6 49891273 49891301 -132523941 + (CA)n Simple_repeat Simple_repeat 1 28 0 29 110 0 0 chr6 49892096 49892223 -132523019 + GC_rich Low_complexity Low_complexity 1 127 0 257 176 14 0 chr6 49892327 49892401 -132522841 + (CCG)n Simple_repeat Simple_repeat 1 75 0 240 192 19 58 chr6 49892563 49892667 -132522575 + G-rich Low_complexity Low_complexity 1 100 0 596 253 7 47 chr6 49893298 49893448 -132521794 + MIR3 SINE MIR 31 174 -34 185 265 221 44 chr6 49893596 49893732 -132521510 - L2 LINE L2 -5 3308 3149 298 291 35 17 chr6 49893799 49893939 -132521303 - MIR SINE MIR -78 130 27 233 385 9 0 chr6 49894275 49894384 -132520858 - L3b LINE CR1 -150 1433 1324 331 195 69 0 chr6 49895228 49895315 -132519927 + MIR SINE MIR 61 153 -109 1976 117 23 29 chr6 49895332 49895640 -132519602 - AluSx SINE Alu -6 306 1 1632 107 148 8 chr6 49897037 49897300 -132517942 + AluSx SINE Alu 3 302 0 303 130 0 0 chr6 49897384 49897438 -132517804 + (TGAA)n Simple_repeat Simple_repeat 2 55 0 25 31 0 0 chr6 49897521 49897553 -132517689 + GC_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 49897716 49897740 -132517502 + GC_rich Low_complexity Low_complexity 1 24 0 318 332 68 40 chr6 49900718 49900968 -132514274 - L2 LINE L2 -35 3237 2981 701 316 103 10 chr6 49901819 49902110 -132513132 - L2 LINE L2 0 3313 2996 531 31 0 0 chr6 49902290 49902355 -132512887 + (TG)n Simple_repeat Simple_repeat 2 66 0 284 307 57 0 chr6 49903204 49903292 -132511950 + MIR SINE MIR 16 108 -100 394 265 63 80 chr6 49903307 49903545 -132511697 - MER102a DNA MER1_type -9 321 88 237 180 0 20 chr6 49903633 49903683 -132511559 + L3 LINE CR1 1524 1572 -5 329 328 75 46 chr6 49904916 49905264 -132509978 - L2 LINE L2 -78 3235 2878 25 99 0 0 chr6 49905550 49905631 -132509611 + GC_rich Low_complexity Low_complexity 1 81 0 23 54 0 0 chr6 49905690 49905727 -132509515 + GC_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr6 49906148 49906169 -132509073 + (GA)n Simple_repeat Simple_repeat 1 21 0 29 0 0 0 chr6 49909042 49909071 -132506171 + AT_rich Low_complexity Low_complexity 1 29 0 640 193 170 0 chr6 49910206 49910341 -132504901 + AluSx SINE Alu 26 183 -129 2288 85 0 7 chr6 49910385 49910691 -132504551 + AluY SINE Alu 1 304 -7 277 314 0 21 chr6 49912715 49912889 -132502353 + CT-rich Low_complexity Low_complexity 1 170 0 1390 191 68 7 chr6 49913829 49914107 -132501135 - AluJb SINE Alu -17 295 1 220 250 92 13 chr6 49914805 49914881 -132500361 + MER5A DNA MER1_type 9 90 -99 2059 114 27 7 chr6 49918151 49918449 -132496793 + AluSq SINE Alu 2 305 -8 2200 100 7 0 chr6 49918452 49918753 -132496489 + AluSg SINE Alu 1 303 -7 2270 90 3 6 chr6 49919223 49919534 -132495708 + AluSp SINE Alu 1 310 -3 1277 223 73 34 chr6 49919659 49919832 -132495410 + MER58B DNA MER1_type 1 166 -2254 2116 107 3 0 chr6 49919832 49920130 -132495112 - AluSx SINE Alu -13 299 1 1277 223 73 34 chr6 49920130 49920283 -132494959 + MER58B DNA MER1_type 166 340 -1 700 304 78 16 chr6 49920705 49921090 -132494152 - L1M4 LINE L1 -1701 4445 4037 1499 150 63 43 chr6 49921092 49921392 -132493850 - AluJo SINE Alu -6 306 1 898 179 0 7 chr6 49921448 49921599 -132493643 - AluJo SINE Alu -160 152 3 937 266 96 101 chr6 49921611 49921646 -132493596 - L1M4 LINE L1 -2913 3233 3199 2003 109 23 7 chr6 49921646 49921950 -132493292 + AluSg SINE Alu 2 310 0 937 266 96 101 chr6 49921950 49922061 -132493181 - L1M4 LINE L1 -2947 3199 3089 2180 100 0 25 chr6 49922061 49922380 -132492862 - AluSx SINE Alu -1 311 1 937 266 96 101 chr6 49922380 49922712 -132492530 - L1M4 LINE L1 -3057 3089 2757 1937 151 0 7 chr6 49922712 49923016 -132492226 - AluJb SINE Alu -10 302 1 937 266 96 101 chr6 49923016 49923117 -132492125 - L1M4 LINE L1 -3389 2757 2653 2412 71 3 0 chr6 49923117 49923414 -132491828 - AluSp SINE Alu -15 298 1 937 266 96 101 chr6 49923414 49923458 -132491784 - L1M4 LINE L1 -3493 2653 2610 418 88 0 0 chr6 49923501 49923558 -132491684 - Alu SINE Alu -12 300 244 214 309 167 44 chr6 49923677 49923929 -132491313 - L2 LINE L2 -911 2403 2121 258 292 85 23 chr6 49924735 49924865 -132490377 + MIR SINE MIR 104 241 -21 1315 99 22 0 chr6 49926071 49926253 -132488989 + AluSg SINE Alu 1 186 -124 2185 89 3 32 chr6 49926292 49926608 -132488634 + AluSp SINE Alu 1 307 -6 228 233 0 0 chr6 49929279 49929339 -132485903 + (CAGA)n Simple_repeat Simple_repeat 3 62 0 697 189 101 12 chr6 49930483 49930652 -132484590 + L1ME3 LINE L1 5977 6160 -2 207 185 56 19 chr6 49930889 49930943 -132484299 + MIR SINE MIR 95 150 -112 2060 114 17 0 chr6 49931258 49931548 -132483694 + AluSq SINE Alu 1 295 -18 228 293 108 44 chr6 49932016 49932265 -132482977 + L2 LINE L2 2712 2976 -338 186 274 20 0 chr6 49933584 49933635 -132481607 + L3b LINE CR1 1397 1448 -135 304 273 66 25 chr6 49935050 49935171 -132480071 - MIR SINE MIR -68 194 69 243 325 18 41 chr6 49936214 49936383 -132478859 + GA-rich Low_complexity Low_complexity 2 166 0 301 208 0 42 chr6 49937493 49937565 -132477677 - L2 LINE L2 0 3272 3204 2231 104 0 3 chr6 49937650 49937958 -132477284 - AluSq SINE Alu -6 307 1 408 246 93 8 chr6 49938518 49938636 -132476606 - MIR SINE MIR -79 183 56 267 205 8 51 chr6 49939640 49939757 -132475485 + C-rich Low_complexity Low_complexity 2 113 0 516 112 0 245 chr6 49941904 49941998 -132473244 + MER96B DNA MER1_type? 1 116 -301 1796 152 0 13 chr6 49941998 49942308 -132472934 + AluJb SINE Alu 1 306 -6 516 112 0 245 chr6 49942308 49942333 -132472909 + MER96B DNA MER1_type? 116 145 -272 2244 89 0 38 chr6 49942333 49942649 -132472593 - AluSg SINE Alu -6 304 1 516 112 0 245 chr6 49942649 49942699 -132472543 + MER96B DNA MER1_type? 145 103 -314 1538 192 0 21 chr6 49942699 49942985 -132472257 + AluJo SINE Alu 2 281 -31 516 112 0 245 chr6 49942985 49943046 -132472196 + MER96B DNA MER1_type? 102 176 -241 200 114 45 0 chr6 49943351 49943395 -132471847 + (CCCCG)n Simple_repeat Simple_repeat 1 46 0 2291 58 24 0 chr6 49944106 49944401 -132470841 - AluSp SINE Alu -11 302 1 205 196 0 43 chr6 49944951 49944997 -132470245 - L2 LINE L2 -8 3305 3262 216 158 18 35 chr6 49945645 49945702 -132469540 + (CAG)n Simple_repeat Simple_repeat 3 58 0 2188 121 0 6 chr6 49946499 49946814 -132468428 - AluSq SINE Alu 0 313 1 2313 97 0 0 chr6 49947258 49947569 -132467673 - AluSx SINE Alu -1 311 1 1772 157 13 13 chr6 49947579 49947891 -132467351 - AluJb SINE Alu 0 312 1 2022 149 0 0 chr6 49948309 49948610 -132466632 + AluSx SINE Alu 1 301 -11 382 290 28 0 chr6 49948610 49948717 -132466525 - MIR SINE MIR -79 183 74 * 1216 251 83 24 chr6 49948714 49949125 -132466117 + L2 LINE L2 2354 2788 -526 1424 153 0 33 chr6 49949127 49949369 -132465873 + AluJo SINE Alu 65 298 -14 305 144 78 22 chr6 49949369 49949459 -132465783 - MER34C-int LTR ERV1 -2142 2794 2700 2298 89 7 0 chr6 49949462 49949764 -132465478 + AluSx SINE Alu 1 304 -8 213 200 0 0 chr6 49949774 49949814 -132465428 + T-rich Low_complexity Low_complexity 3 42 0 1229 104 33 9 chr6 49949842 49950053 -132465189 + MER4A LTR ERV1 1 216 -448 1863 94 8 19 chr6 49950159 49950426 -132464816 - AluSc SINE Alu -45 264 1 1383 195 40 26 chr6 49950482 49950784 -132464458 - AluJb SINE Alu -2 310 5 286 239 35 35 chr6 49950784 49950926 -132464316 - MER34C-int LTR ERV1 -3815 4305 4164 1219 157 17 113 chr6 49950929 49951074 -132464168 - L1MA6 LINE L1 0 6300 6143 1610 152 3 84 chr6 49951074 49951427 -132463815 - AluJb SINE Alu 0 312 3 1219 157 17 113 chr6 49951427 49951455 -132463787 - L1MA6 LINE L1 -157 6143 6114 658 264 0 0 chr6 49951455 49951580 -132463662 + FLAM_A SINE Alu 1 125 -8 1740 163 23 0 chr6 49951590 49951706 -132463536 + AluSx SINE Alu 6 118 -194 315 0 0 0 chr6 49951706 49951741 -132463501 + (CA)n Simple_repeat Simple_repeat 2 36 0 1740 163 23 0 chr6 49951741 49951924 -132463318 + AluSx SINE Alu 118 312 0 1219 157 17 113 chr6 49951924 49952082 -132463160 - L1MA6 LINE L1 -195 6105 5990 381 223 35 86 chr6 49952098 49952394 -132462848 - MER34C-int LTR ERV1 -1960 3622 1561 225 94 0 0 chr6 49952397 49952429 -132462813 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 584 193 110 0 chr6 49952429 49952538 -132462704 - AluJo/FRAM SINE Alu -32 280 160 864 182 0 0 chr6 49952539 49952682 -132462560 - FRAM SINE Alu -33 143 1 471 270 66 18 chr6 49952712 49952938 -132462304 - MER34C-int LTR ERV1 -3021 1915 1679 1550 138 42 28 chr6 49952944 49953227 -132462015 + AluJo SINE Alu 1 287 -25 234 0 0 0 chr6 49953232 49953258 -132461984 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2286 76 3 0 chr6 49953285 49953588 -132461654 + AluY SINE Alu 1 304 -7 2168 96 0 3 chr6 49953605 49953898 -132461344 - AluSc SINE Alu -17 292 1 435 238 17 70 chr6 49953898 49954064 -132461178 - MER34C-int LTR ERV1 -6647 1473 1317 393 258 20 81 chr6 49954064 49954090 -132461152 - LTR57-int LTR ERVL -3824 1519 1332 346 116 113 19 chr6 49954090 49954171 -132461071 + AluS SINE Alu 1 63 -240 1986 137 0 0 chr6 49954266 49954559 -132460683 + AluJo SINE Alu 1 293 -19 1673 239 69 91 chr6 49955104 49955253 -132459989 - MER34C-int LTR ERV1 -5182 1149 998 1915 132 0 58 chr6 49955253 49955578 -132459664 - AluJo SINE Alu 0 312 7 1673 239 69 91 chr6 49955578 49955699 -132459543 - MER34C-int LTR ERV1 -5333 998 876 2148 90 21 0 chr6 49955699 49955989 -132459253 + AluSp SINE Alu 1 296 -17 1673 239 69 91 chr6 49955989 49956093 -132459149 - MER34C-int LTR ERV1 -5455 876 771 1990 62 80 4 chr6 49956093 49956369 -132458873 + AluY SINE Alu 3 299 -12 1673 239 69 91 chr6 49956369 49956995 -132458247 - MER34C-int LTR ERV1 -5560 771 169 1976 136 7 7 chr6 49956998 49957306 -132457936 + AluSx SINE Alu 1 308 -4 1730 172 3 7 chr6 49957522 49957700 -132457542 - AluJb SINE Alu -2 310 133 2275 96 0 0 chr6 49957700 49958001 -132457241 - AluSg SINE Alu -9 301 1 1730 172 3 7 chr6 49958001 49958012 -132457230 - AluJb SINE Alu -179 133 123 189 0 0 0 chr6 49958012 49958033 -132457209 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1730 172 3 7 chr6 49958033 49958145 -132457097 - AluJb SINE Alu -189 123 9 1207 248 127 45 chr6 49958586 49959123 -132456119 - MER34C LTR ERV1 0 585 5 417 280 93 55 chr6 49959147 49959383 -132455859 + L2 LINE L2 2963 3207 -106 1994 99 7 11 chr6 49959383 49959699 -132455543 + AluSx SINE Alu 3 317 0 1207 216 151 36 chr6 49959795 49960211 -132455031 + MER4C LTR ERV1 1 464 -1 181 250 0 0 chr6 49960237 49960277 -132454965 - MIR SINE MIR -199 63 24 239 233 0 33 chr6 49960475 49960535 -132454707 + MIR SINE MIR 85 142 -66 236 236 69 0 chr6 49961308 49961380 -132453862 - L2 LINE L2 -16 3256 3180 196 322 148 9 chr6 49961753 49961868 -132453374 + MIR SINE MIR 126 256 -6 2229 115 0 0 chr6 49962961 49963273 -132451969 + AluSx SINE Alu 1 312 0 838 194 0 7 chr6 49963393 49963548 -132451694 - FRAM SINE Alu -16 160 7 1870 146 7 3 chr6 49963591 49963885 -132451357 + AluJb SINE Alu 1 295 -17 273 254 73 124 chr6 49963894 49964078 -132451164 + L1ME2 LINE L1 4563 4755 -1391 1830 139 9 22 chr6 49964078 49964394 -132450848 + AluJb SINE Alu 1 312 0 273 254 73 124 chr6 49964394 49964661 -132450581 + L1ME2 LINE L1 4755 4991 -1155 1058 153 18 0 chr6 49964663 49964826 -132450416 + AluSp SINE Alu 1 166 -147 925 135 27 0 chr6 49964922 49965070 -132450172 + AluSg/x SINE Alu 152 303 -7 2543 48 0 10 chr6 49965111 49965423 -132449819 + AluY SINE Alu 1 309 -2 300 240 40 47 chr6 49965538 49965688 -132449554 + L1ME2 LINE L1 5145 5293 -853 789 173 0 8 chr6 49965690 49965817 -132449425 + FLAM_C SINE Alu 2 127 -16 2281 96 0 0 chr6 49966022 49966325 -132448917 - AluSx SINE Alu -9 303 1 1682 145 69 0 chr6 49966327 49966603 -132448639 - AluSx SINE Alu -17 295 1 2090 119 3 0 chr6 49966605 49966899 -132448343 - AluSp SINE Alu -18 295 1 1746 137 58 0 chr6 49966901 49967179 -132448063 - AluSx SINE Alu -18 294 1 456 255 33 91 chr6 49967193 49967352 -132447890 + L1ME2 LINE L1 5554 5721 -443 1825 144 58 3 chr6 49967352 49967643 -132447599 + AluSg SINE Alu 1 307 -3 456 255 33 91 chr6 49967643 49967851 -132447391 + L1ME2 LINE L1 5721 5902 -262 924 219 6 0 chr6 49967930 49968113 -132447129 + AluJb SINE Alu 121 304 -8 2181 130 0 9 chr6 49968257 49968572 -132446670 + AluSx SINE Alu 1 312 0 242 215 86 21 chr6 49968573 49968666 -132446576 + L1MC4 LINE L1 7918 8016 -26 2167 108 3 7 chr6 49969578 49969875 -132445367 - AluSq SINE Alu -17 296 1 566 288 137 15 chr6 49969995 49970200 -132445042 + MIR SINE MIR 1 230 -32 394 186 350 0 chr6 49970208 49970305 -132444937 + FLAM_C SINE Alu 2 132 -1 210 267 76 6 chr6 49970388 49970476 -132444766 - MIR SINE MIR -56 206 108 241 319 166 17 chr6 49970671 49970906 -132444336 - L2 LINE L2 -50 3222 2953 288 111 0 0 chr6 49971467 49971512 -132443730 + (CA)n Simple_repeat Simple_repeat 2 46 0 2312 98 0 16 chr6 49971537 49971852 -132443390 + AluSx SINE Alu 1 310 -2 2252 125 0 0 chr6 49971854 49972167 -132443075 + AluSq SINE Alu 1 313 0 723 171 57 0 chr6 49972195 49972318 -132442924 + FAM SINE Alu 39 168 -17 22 0 0 0 chr6 49972320 49972342 -132442900 + AT_rich Low_complexity Low_complexity 1 22 0 294 125 78 16 chr6 49972365 49972493 -132442749 + (TA)n Simple_repeat Simple_repeat 2 137 0 1673 258 53 32 chr6 49972498 49972984 -132442258 + L1MC4a LINE L1 5326 5825 -1983 2416 76 0 7 chr6 49972984 49973287 -132441955 + AluSq SINE Alu 1 301 -12 1673 258 53 32 chr6 49973287 49973331 -132441911 + L1MC4a LINE L1 5825 5867 -1941 1690 167 6 43 chr6 49973367 49973691 -132441551 + AluJo SINE Alu 1 312 0 1014 162 0 12 chr6 49974499 49974666 -132440576 - AluJ SINE Alu -13 299 135 24 85 0 0 chr6 49974683 49974742 -132440500 + AT_rich Low_complexity Low_complexity 1 59 0 413 262 43 28 chr6 49974753 49974894 -132440348 - MIR SINE MIR -48 214 72 1129 118 6 0 chr6 49974947 49975116 -132440126 + AluSg/x SINE Alu 141 310 -2 1434 126 122 26 chr6 49975117 49975387 -132439855 + LTR56 LTR ERV1 17 312 -133 1442 186 19 13 chr6 49975390 49975697 -132439545 - AluSx SINE Alu -3 309 1 811 132 0 97 chr6 49975697 49975841 -132439401 - AluJ SINE Alu -174 138 9 1265 246 127 45 chr6 49976282 49976819 -132438423 - MER34C LTR ERV1 0 585 5 415 263 103 62 chr6 49976836 49977079 -132438163 + L2 LINE L2 2955 3207 -106 2081 99 7 11 chr6 49977079 49977395 -132437847 + AluSx SINE Alu 3 317 0 1139 199 159 43 chr6 49977491 49977907 -132437335 + MER4C LTR ERV1 1 464 -1 187 250 0 0 chr6 49977933 49977973 -132437269 - MIR SINE MIR -199 63 24 232 205 0 38 chr6 49978164 49978226 -132437016 + MIR SINE MIR 78 137 -71 559 210 112 56 chr6 49978588 49978731 -132436511 - MIR SINE MIR -2 260 110 354 215 0 0 chr6 49978861 49978926 -132436316 + MER116 DNA Mariner 2 66 -14 610 216 131 7 chr6 49980694 49980847 -132434395 - MIR3 SINE MIR -6 202 31 187 219 24 24 chr6 49981261 49981302 -132433940 + MIR SINE MIR 17 57 -151 1764 167 43 0 chr6 49981356 49981655 -132433587 - AluJo SINE Alu 0 312 1 2228 130 0 9 chr6 49981659 49981974 -132433268 - AluSx SINE Alu 0 312 1 304 296 77 53 chr6 49982451 49982620 -132432622 + L2 LINE L2 2911 3083 -189 2208 103 3 28 chr6 49982679 49983000 -132432242 + AluSq SINE Alu 1 313 0 1075 305 18 58 chr6 49983466 49983968 -132431274 - L2 LINE L2 -28 3285 2804 2094 122 37 37 chr6 49983973 49984327 -132430915 - THE1B LTR MaLR -10 354 1 9136 87 166 7 chr6 49984327 49985690 -132429552 - THE1B-int LTR MaLR 0 1580 1 2095 152 41 36 chr6 49985690 49986052 -132429190 - THE1B LTR MaLR 0 364 1 181 179 0 0 chr6 49986111 49986139 -132429103 - L2 LINE L2 -1527 1787 1760 189 0 0 0 chr6 49986391 49986412 -132428830 + (T)n Simple_repeat Simple_repeat 1 21 0 560 272 9 0 chr6 49986623 49986737 -132428505 + FLAM_A SINE Alu 2 116 -17 1693 134 45 0 chr6 49987439 49987686 -132427556 - AluSx SINE Alu -15 297 40 2135 140 0 6 chr6 49990600 49990914 -132424328 + AluJb SINE Alu 1 312 0 44006 32 21 1 chr6 49990920 49996951 -132418291 + L1PA2 LINE L1 1 6154 -1 470 168 129 10 chr6 49996960 49997154 -132418088 + L1 LINE L1 2860 3099 -3047 371 291 52 33 chr6 49997371 49997472 -132417770 - L1ME4a LINE L1 -227 5894 5796 2225 116 0 7 chr6 49997472 49997775 -132417467 + AluSx SINE Alu 1 301 -11 371 291 52 33 chr6 49997775 49997883 -132417359 - L1ME4a LINE L1 -325 5796 5681 392 210 10 23 chr6 49998820 49998930 -132416312 + L1MC/D LINE L1 5476 5581 -540 * 32230 105 25 60 chr6 49998909 50004915 -132410327 + L1P3 LINE L1 1 5781 -373 44724 40 3 1 chr6 50004918 50011049 -132404193 + L1PA3 LINE L1 6 6144 -11 2282 90 3 3 chr6 50011355 50011654 -132403588 + AluSg SINE Alu 1 299 -11 2109 132 0 3 chr6 50012268 50012563 -132402679 + AluSx SINE Alu 1 294 -18 2406 97 0 3 chr6 50013014 50013325 -132401917 - AluY SINE Alu -1 310 1 402 21 0 0 chr6 50013999 50014046 -132401196 + (TG)n Simple_repeat Simple_repeat 1 47 0 243 245 95 60 chr6 50014094 50014294 -132400948 - L1M4 LINE L1 -1299 4847 4641 385 317 8 20 chr6 50014729 50014882 -132400360 + L1ME LINE L1 5453 5603 -518 2035 188 170 60 chr6 50015435 50015587 -132399655 - Zaphod DNA AcHobo -855 3176 3042 2233 123 0 3 chr6 50015587 50015896 -132399346 + AluSx SINE Alu 1 308 -4 2035 188 170 60 chr6 50015896 50016460 -132398782 - Zaphod DNA AcHobo -989 3042 2381 * 2325 203 58 55 chr6 50016432 50016962 -132398280 - Zaphod DNA AcHobo -3246 785 251 2283 158 56 0 chr6 50016962 50017355 -132397887 - L1MB4 LINE L1 -9 6171 5757 2325 203 58 55 chr6 50017355 50017430 -132397812 - Zaphod DNA AcHobo -3780 251 178 225 254 34 0 chr6 50017433 50017492 -132397750 - Zaphod DNA AcHobo -3970 61 1 187 222 37 19 chr6 50019222 50019276 -132395966 - L2 LINE L2 -8 3264 3210 227 420 51 0 chr6 50020152 50020290 -132394952 + L3b LINE CR1 1394 1538 -45 2992 98 82 42 chr6 50020307 50020857 -132394385 + MER4B LTR ERV1 3 574 -36 1567 183 63 11 chr6 50021727 50021843 -132393399 + AluJb SINE Alu 1 109 -203 356 0 23 0 chr6 50021843 50021887 -132393355 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 1567 183 63 11 chr6 50021887 50022054 -132393188 + AluJb SINE Alu 109 299 -13 185 178 22 0 chr6 50022227 50022272 -132392970 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 309 265 27 75 chr6 50024665 50024752 -132390490 + L2 LINE L2 2600 2679 -635 2281 113 0 0 chr6 50024752 50025062 -132390180 - AluY SINE Alu -1 310 1 309 265 27 75 chr6 50025062 50025121 -132390121 + L2 LINE L2 2679 2739 -575 1651 176 40 20 chr6 50025176 50025477 -132389765 + AluJo SINE Alu 3 309 -3 22 56 0 0 chr6 50027568 50027604 -132387638 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 50029528 50029556 -132385686 + AT_rich Low_complexity Low_complexity 1 28 0 244 352 11 0 chr6 50030083 50030174 -132385068 + MIR SINE MIR 33 124 -84 21 0 0 0 chr6 50031120 50031141 -132384101 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 50031351 50031382 -132383860 + AT_rich Low_complexity Low_complexity 1 31 0 366 181 134 55 chr6 50031403 50031530 -132383712 + L1ME4a LINE L1 5302 5438 -732 430 266 166 12 chr6 50031533 50031702 -132383540 + MIR SINE MIR 67 261 -1 572 286 115 17 chr6 50031726 50032075 -132383167 + L1ME4a LINE L1 5461 5843 -278 322 216 199 6 chr6 50032103 50032279 -132382963 + L1ME4a LINE L1 5908 6117 -4 596 299 18 6 chr6 50032911 50033078 -132382164 - MIR SINE MIR -89 173 5 2365 29 38 54 chr6 50033498 50033814 -132381428 + AluY SINE Alu 1 311 0 2030 104 19 57 chr6 50034879 50035008 -132380234 + AluSq SINE Alu 3 135 -178 2459 69 0 10 chr6 50035008 50035312 -132379930 + AluY SINE Alu 1 301 -10 2030 104 19 57 chr6 50035312 50035498 -132379744 + AluSq SINE Alu 135 306 -7 28 48 0 0 chr6 50038000 50038042 -132377200 + AT_rich Low_complexity Low_complexity 1 42 0 624 253 74 0 chr6 50038392 50038554 -132376688 + MIR SINE MIR 64 237 -25 1247 181 21 38 chr6 50038580 50038817 -132376425 - AluJo SINE Alu -38 274 42 647 258 131 41 chr6 50039065 50039379 -132375863 + L1MC4a LINE L1 5524 5865 -1943 1769 220 8 6 chr6 50039416 50039780 -132375462 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr6 50039877 50039900 -132375342 + AT_rich Low_complexity Low_complexity 1 23 0 1472 157 0 32 chr6 50040998 50041280 -132373962 + AluSx SINE Alu 43 316 0 1962 133 3 3 chr6 50041285 50041571 -132373671 + AluJb SINE Alu 1 286 -26 288 0 0 0 chr6 50041576 50041608 -132373634 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 220 252 29 78 chr6 50041997 50042100 -132373142 - L2 LINE L2 -2 3311 3214 1891 166 3 22 chr6 50042707 50043021 -132372221 + AluJo SINE Alu 1 308 -4 2067 255 71 62 chr6 50043192 50043359 -132371883 - L1MEc LINE L1 -5285 1111 947 2565 53 0 0 chr6 50043359 50043658 -132371584 + AluY SINE Alu 1 299 -12 2067 255 71 62 chr6 50043658 50043671 -132371571 - L1MEc LINE L1 -5449 947 936 2290 92 7 0 chr6 50043671 50043964 -132371278 + AluSc SINE Alu 1 295 -14 2067 255 71 62 chr6 50043964 50044138 -132371104 - L1MEc LINE L1 -5460 936 765 200 0 100 0 chr6 50044138 50044168 -132371074 + T-rich Low_complexity Low_complexity 3 35 0 2167 106 3 0 chr6 50044171 50044455 -132370787 - AluSc SINE Alu -24 285 1 2067 255 71 62 chr6 50044455 50045151 -132370091 - L1MEc LINE L1 -5632 764 45 309 328 64 30 chr6 50045847 50046082 -132369160 - L1M4 LINE L1 -3423 2723 2481 860 246 72 59 chr6 50046835 50047227 -132368015 - LTR33 LTR ERVL 0 521 135 2105 115 28 0 chr6 50047227 50047515 -132367727 + AluSx SINE Alu 5 300 -12 2181 136 0 0 chr6 50047519 50047813 -132367429 + AluSx SINE Alu 1 294 -18 860 246 72 59 chr6 50047813 50047887 -132367355 - LTR33 LTR ERVL -388 133 44 2349 98 0 3 chr6 50048216 50048523 -132366719 + AluSg SINE Alu 2 307 -3 753 213 64 52 chr6 50048895 50049224 -132366018 - L1MC4 LINE L1 0 8042 7710 2291 154 0 11 chr6 50049280 50049649 -132365593 - MLT1A1 LTR MaLR 0 365 1 2164 121 3 0 chr6 50050185 50050490 -132364752 + AluSq SINE Alu 1 306 -7 2417 75 0 31 chr6 50051004 50051343 -132363899 + AluY SINE Alu 1 329 0 274 152 29 114 chr6 50052906 50052976 -132362266 - MER53 DNA DNA -91 98 38 2505 47 0 3 chr6 50052976 50053275 -132361967 - AluY SINE Alu -13 298 1 274 152 29 114 chr6 50053275 50053309 -132361933 - MER53 DNA DNA -151 38 3 520 322 146 0 chr6 50053454 50053625 -132361617 - MER91A DNA MER1_type 0 196 1 247 336 88 0 chr6 50053625 50053762 -132361480 - L2 LINE L2 -896 2418 2270 1586 116 19 186 chr6 50054267 50054681 -132360561 + MER7A DNA MER2_type 4 346 0 21 0 0 0 chr6 50054700 50054721 -132360521 + AT_rich Low_complexity Low_complexity 1 21 0 2840 132 123 32 chr6 50055131 50055361 -132359881 - MER6A DNA MER2_type -261 604 396 1797 136 11 25 chr6 50055361 50055669 -132359573 + AluJb SINE Alu 1 304 0 2840 132 123 32 chr6 50055669 50055930 -132359312 - MER6A DNA MER2_type -469 396 54 1860 150 31 3 chr6 50055930 50056217 -132359025 - AluJb SINE Alu -15 297 3 2840 132 123 32 chr6 50056217 50056277 -132358965 - MER6A DNA MER2_type -811 54 1 2395 165 30 15 chr6 50056291 50056751 -132358491 - MLT1C LTR MaLR 0 467 1 23 33 0 0 chr6 50056836 50056866 -132358376 + AT_rich Low_complexity Low_complexity 1 30 0 562 188 14 161 chr6 50057278 50057501 -132357741 + MER91B DNA MER1_type 1 190 0 301 244 111 29 chr6 50057584 50057756 -132357486 - MLT1K LTR MaLR -7 581 396 1496 82 30 4 chr6 50057860 50058091 -132357151 + L1MA3 LINE L1 6067 6303 -2 271 217 130 0 chr6 50058597 50058666 -132356576 - MIR SINE MIR -94 168 91 477 263 66 15 chr6 50058856 50058993 -132356249 - MIR SINE MIR 0 262 119 212 125 50 0 chr6 50059828 50059868 -132355374 + (CCCCG)n Simple_repeat Simple_repeat 4 45 0 483 277 72 12 chr6 50060558 50060724 -132354518 + MIR SINE MIR 81 256 -6 271 282 0 14 chr6 50060769 50060840 -132354402 + L2 LINE L2 3243 3312 -1 299 242 49 90 chr6 50062177 50062368 -132352874 + MIR SINE MIR 26 212 -50 33 43 0 0 chr6 50062547 50062594 -132352648 + AT_rich Low_complexity Low_complexity 1 47 0 365 125 118 0 chr6 50062606 50062903 -132352339 + (TA)n Simple_repeat Simple_repeat 1 332 0 2410 77 0 0 chr6 50062943 50063243 -132351999 - AluY SINE Alu -11 300 1 1688 106 82 4 chr6 50063421 50063676 -132351566 + AluSx SINE Alu 1 275 -37 454 212 73 0 chr6 50064733 50064870 -132350372 - L1ME4a LINE L1 -11 6110 5964 21 0 0 0 chr6 50064870 50064891 -132350351 + AT_rich Low_complexity Low_complexity 1 21 0 1836 183 0 3 chr6 50065368 50065658 -132349584 - AluJo SINE Alu -20 292 4 501 222 0 0 chr6 50065807 50065906 -132349336 + FLAM_A SINE Alu 4 102 -40 417 121 0 0 chr6 50065908 50065966 -132349276 + FLAM_A SINE Alu 63 120 -22 3173 106 80 9 chr6 50066203 50066269 -132348973 + L1MA4A LINE L1 5715 5775 -528 2160 128 3 3 chr6 50066269 50066581 -132348661 + AluJb SINE Alu 1 312 0 252 0 0 0 chr6 50066587 50066615 -132348627 + (CA)n Simple_repeat Simple_repeat 2 29 0 3173 106 80 9 chr6 50066615 50067079 -132348163 + L1MA4A LINE L1 5779 6290 -13 517 291 31 40 chr6 50067086 50067282 -132347960 + MIR SINE MIR 37 231 -31 256 298 32 65 chr6 50067282 50067406 -132347836 + MER5A DNA MER1_type 2 121 -68 243 231 14 163 chr6 50067317 50067464 -132347778 - MER5A DNA MER1_type -22 167 43 * 583 287 56 5 chr6 50067717 50067912 -132347330 - MIR SINE MIR -54 208 4 3221 181 85 67 chr6 50068159 50068990 -132346252 - MER21B LTR ERV1 -11 852 7 4233 202 90 95 chr6 50070581 50070671 -132344571 - L1M4c LINE L1 -4833 2022 1933 1554 177 47 0 chr6 50070671 50070948 -132344294 - AluJo SINE Alu -22 290 1 4233 202 90 95 chr6 50070948 50071348 -132343894 - L1M4c LINE L1 -4922 1933 1533 2282 81 14 0 chr6 50071348 50071645 -132343597 - AluY SINE Alu -10 301 1 4233 202 90 95 chr6 50071645 50072080 -132343162 - L1M4c LINE L1 -5322 1533 1098 2037 138 20 0 chr6 50072080 50072377 -132342865 - AluSx SINE Alu -9 303 1 4233 202 90 95 chr6 50072377 50073352 -132341890 - L1M4c LINE L1 -5757 1098 200 6065 15 0 0 chr6 50073352 50074036 -132341206 - L1PA3 LINE L1 -3 6152 5469 4233 202 90 95 chr6 50074036 50074226 -132341016 - L1M4c LINE L1 -6655 200 11 323 256 56 56 chr6 50074309 50074434 -132340808 - HAL1b LINE L1 -38 1310 1186 528 322 87 23 chr6 50074581 50075008 -132340234 - L1ME LINE L1 -344 5777 5318 29 28 0 0 chr6 50075809 50075845 -132339397 + AT_rich Low_complexity Low_complexity 1 36 0 1612 170 46 11 chr6 50075848 50076130 -132339112 - AluJo SINE Alu -20 292 1 1684 164 20 17 chr6 50076397 50076689 -132338553 - AluJb SINE Alu -19 293 1 2319 107 0 16 chr6 50077587 50077897 -132337345 - AluSx SINE Alu -7 305 1 230 250 76 87 chr6 50078212 50078304 -132336938 - L2 LINE L2 -2 3270 3180 2019 120 6 46 chr6 50078320 50078645 -132336597 + AluSx SINE Alu 1 312 0 2198 100 0 23 chr6 50079026 50079327 -132335915 - AluSc SINE Alu -15 294 1 781 149 15 22 chr6 50079963 50080097 -132335145 - FLAM_C SINE Alu 0 133 1 2490 241 133 73 chr6 50080970 50081636 -132333606 - HAL1 LINE L1 -190 2317 1693 2986 155 31 2 chr6 50081636 50082179 -132333063 - L1MA8 LINE L1 -2 6289 5731 2490 241 133 73 chr6 50082179 50083287 -132331955 - HAL1 LINE L1 -814 1693 435 300 27 0 0 chr6 50083297 50083334 -132331908 + (GA)n Simple_repeat Simple_repeat 1 37 0 438 121 0 15 chr6 50084004 50084070 -132331172 - AluJb SINE Alu -17 295 231 913 170 0 13 chr6 50084070 50084223 -132331019 - AluJb SINE Alu -161 151 1 25 31 0 0 chr6 50084282 50084314 -132330928 + AT_rich Low_complexity Low_complexity 1 32 0 3395 169 73 43 chr6 50084372 50084473 -132330769 - L1MB7 LINE L1 0 6184 6088 2804 7 0 0 chr6 50084473 50084777 -132330465 - AluYa5 SINE Alu -7 304 1 3395 169 73 43 chr6 50084777 50085279 -132329963 - L1MB7 LINE L1 -96 6088 5603 1884 170 0 3 chr6 50085279 50085579 -132329663 - AluJb SINE Alu -12 300 2 3395 169 73 43 chr6 50085579 50085765 -132329477 - L1MB7 LINE L1 -581 5603 5424 1853 175 7 0 chr6 50085765 50086073 -132329169 - AluJb SINE Alu -2 310 1 441 0 0 0 chr6 50086078 50086127 -132329115 + (TG)n Simple_repeat Simple_repeat 2 50 0 3395 169 73 43 chr6 50086127 50086192 -132329050 - L1MB7 LINE L1 -763 5421 5296 648 218 16 8 chr6 50086207 50086331 -132328911 - FLAM_C SINE Alu -18 125 1 2102 206 25 4 chr6 50086335 50086883 -132328359 - L1MB7 LINE L1 -846 5300 4741 1191 243 110 30 chr6 50087070 50087543 -132327699 - MLT1J LTR MaLR 0 511 1 735 262 108 36 chr6 50087815 50088363 -132326879 - MLT2E LTR ERVL 0 628 1 1597 256 55 72 chr6 50088727 50089301 -132325941 - MLT1G LTR MaLR -33 557 1 7463 28 0 8 chr6 50089693 50090930 -132324312 - L1PA4 LINE L1 -3 6152 4918 1079 126 6 13 chr6 50091478 50091637 -132323605 - AluSg/x SINE Alu -23 289 132 1205 134 26 35 chr6 50092005 50092055 -132323187 + MER46A DNA MER2_type 1 50 -2681 2216 107 3 0 chr6 50092055 50092353 -132322889 - AluSp SINE Alu -14 299 1 1205 134 26 35 chr6 50092353 50092534 -132322708 + MER46A DNA MER2_type 50 230 -6 231 294 32 46 chr6 50092561 50092779 -132322463 + MER65A LTR ERV1 231 445 0 251 289 0 0 chr6 50092779 50092855 -132322387 - L1MC4 LINE L1 -43 7999 7924 1424 174 119 16 chr6 50093271 50093582 -132321660 - MER2 DNA MER2_type -1 343 1 193 302 19 19 chr6 50093583 50093636 -132321606 + L2 LINE L2 3134 3186 -86 1424 71 52 0 chr6 50095827 50096039 -132319203 - L1MA2 LINE L1 0 6304 6082 597 204 18 0 chr6 50096633 50096746 -132318496 + FLAM_A SINE Alu 5 119 -14 1066 161 137 0 chr6 50096874 50097079 -132318163 + MER46A DNA MER2_type 1 233 -3 295 295 16 100 chr6 50100181 50100423 -132314819 - MIR SINE MIR -29 233 4 321 325 67 49 chr6 50100589 50100711 -132314531 + MIR SINE MIR 2 120 -142 2068 151 0 0 chr6 50100711 50101015 -132314227 - AluSg SINE Alu -6 304 1 321 325 67 49 chr6 50101015 50101154 -132314088 + MIR SINE MIR 120 262 0 22 0 0 0 chr6 50101616 50101638 -132313604 + AT_rich Low_complexity Low_complexity 1 22 0 183 114 0 0 chr6 50101775 50101810 -132313432 + (T)n Simple_repeat Simple_repeat 1 35 0 2305 98 0 0 chr6 50102269 50102566 -132312676 - AluSc SINE Alu -12 297 1 420 292 18 9 chr6 50104847 50104960 -132310282 - L2 LINE L2 0 3313 3200 312 143 0 18 chr6 50107421 50107477 -132307765 + MIR SINE MIR 101 155 -107 2252 95 17 0 chr6 50107477 50107773 -132307469 - AluSq SINE Alu -12 301 1 335 251 86 43 chr6 50108271 50108458 -132306784 - L1MC5 LINE L1 -21 7940 7746 1844 153 10 7 chr6 50109650 50109944 -132305298 - AluJb SINE Alu -17 295 1 468 310 77 7 chr6 50110098 50110253 -132304989 + MER5B DNA MER1_type 13 178 0 207 69 0 0 chr6 50110354 50110383 -132304859 + (T)n Simple_repeat Simple_repeat 1 29 0 2811 148 47 8 chr6 50110544 50111077 -132304165 - L1MB8 LINE L1 0 6178 5625 538 241 94 31 chr6 50111413 50111604 -132303638 - MIR SINE MIR 0 262 60 2176 123 0 3 chr6 50111938 50112238 -132303004 - AluSx SINE Alu -13 299 1 4688 149 58 35 chr6 50112256 50112404 -132302838 - L1MA7 LINE L1 -6 6285 6142 2112 141 0 0 chr6 50112404 50112703 -132302539 - AluSx SINE Alu -13 299 1 4688 149 58 35 chr6 50112703 50113563 -132301679 - L1MA7 LINE L1 -149 6142 5254 320 125 0 0 chr6 50113574 50113622 -132301620 + Alu SINE Alu 1 48 -260 2274 115 0 0 chr6 50113625 50113930 -132301312 - AluSc SINE Alu -4 305 1 972 269 91 57 chr6 50113931 50114054 -132301188 - L1M1 LINE L1 -3957 3608 3491 407 19 19 0 chr6 50114054 50114106 -132301136 + (TG)n Simple_repeat Simple_repeat 2 54 0 972 269 91 57 chr6 50114106 50114717 -132300525 - L1M1 LINE L1 -4074 3491 2849 392 172 16 39 chr6 50114721 50114849 -132300393 + T-rich Low_complexity Low_complexity 5 129 0 7252 211 48 14 chr6 50114849 50116964 -132298278 - L1M4c LINE L1 -4516 2137 21 233 329 14 110 chr6 50119100 50119319 -132295923 + L3 LINE CR1 795 992 -585 261 376 171 0 chr6 50119346 50119463 -132295779 - L2 LINE L2 0 3272 3136 450 270 137 30 chr6 50119473 50119706 -132295536 - L2 LINE L2 -14 3299 3042 259 30 0 0 chr6 50119706 50119739 -132295503 - tRNA-Gly-GGA tRNA tRNA -36 39 7 703 301 143 52 chr6 50119774 50120252 -132294990 - L2 LINE L2 -257 3056 2546 261 311 120 12 chr6 50120399 50120724 -132294518 - L1M4 LINE L1 -1979 4167 3808 901 170 0 0 chr6 50121068 50121209 -132294033 + FLAM_C SINE Alu 1 141 -2 1261 316 150 53 chr6 50121475 50121560 -132293682 - L1M4 LINE L1 -2373 3773 3698 2231 130 3 0 chr6 50121560 50121859 -132293383 - AluSx SINE Alu -12 300 1 1261 316 150 53 chr6 50121859 50123268 -132291974 - L1M4 LINE L1 -2448 3698 2134 638 227 8 84 chr6 50123415 50123653 -132291589 - LTR41 LTR ERVL -10 763 544 952 230 71 20 chr6 50124411 50124663 -132290579 + Tigger7 DNA MER2_type 1 265 -468 2452 150 73 73 chr6 50124671 50125230 -132290012 - MER7C DNA MER2_type 0 602 44 713 187 67 25 chr6 50125408 50125603 -132289639 + MER33 DNA MER1_type 1 188 -100 1145 149 13 48 chr6 50125604 50125832 -132289410 + Tigger2a DNA MER2_type 3 222 -212 495 214 0 0 chr6 50125836 50125925 -132289317 + AluJ/FLAM SINE Alu 6 94 -218 2709 218 54 20 chr6 50125940 50126680 -132288562 + L1MA9 LINE L1 5504 6268 -44 788 167 0 0 chr6 50126871 50126997 -132288245 - FLAM_C SINE Alu -7 126 1 698 140 0 0 chr6 50127109 50127216 -132288026 - AluSq/x SINE Alu -185 127 21 1426 135 0 0 chr6 50127681 50127881 -132287361 + AluSx SINE Alu 40 239 -73 833 0 10 0 chr6 50127903 50128000 -132287242 + (TAAAA)n Simple_repeat Simple_repeat 3 100 0 23 0 0 0 chr6 50128273 50128296 -132286946 + AT_rich Low_complexity Low_complexity 1 23 0 647 311 166 13 chr6 50129981 50130451 -132284791 + LTR67 LTR ERVL 5 546 -11 2115 128 3 3 chr6 50131014 50131310 -132283932 - AluSq SINE Alu -17 296 1 252 0 0 0 chr6 50131704 50131732 -132283510 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1494 165 88 4 chr6 50131734 50131994 -132283248 - AluJo SINE Alu -30 282 1 293 146 0 184 chr6 50132927 50132980 -132282262 - MER3 DNA MER1_type -4 205 177 2545 35 0 0 chr6 50132980 50133290 -132281952 + AluY SINE Alu 1 310 0 293 146 0 184 chr6 50133290 50133338 -132281904 - MER3 DNA MER1_type -32 177 122 806 181 0 0 chr6 50133483 50133610 -132281632 + AluJb SINE Alu 7 133 -179 1456 191 33 4 chr6 50133612 50133945 -132281297 + AluJo SINE Alu 1 341 0 289 161 149 35 chr6 50134033 50134120 -132281122 + L1MC/D LINE L1 5712 5808 -2000 180 125 0 0 chr6 50134426 50134458 -132280784 + (TC)n Simple_repeat Simple_repeat 2 33 0 357 315 27 9 chr6 50134637 50134748 -132280494 + MIR SINE MIR 30 142 -120 419 323 132 21 chr6 50135312 50135501 -132279741 + MIR SINE MIR 53 262 0 377 248 105 68 chr6 50135775 50136041 -132279201 + MLT1J LTR MaLR 143 418 -93 711 355 6 26 chr6 50136371 50136712 -132278530 + L3 LINE CR1 553 886 -691 2401 171 35 2 chr6 50136811 50137262 -132277980 - MLT1C LTR MaLR -1 466 1 267 291 194 0 chr6 50137274 50137377 -132277865 + L3 LINE CR1 1258 1380 -197 270 108 0 0 chr6 50137514 50137551 -132277691 + MER94 DNA DNA 13 49 -85 2056 178 77 46 chr6 50137597 50137787 -132277455 + MER97a DNA MER1_type? 83 266 -628 2443 97 0 0 chr6 50137787 50138097 -132277145 - AluSx SINE Alu -2 310 1 2056 178 77 46 chr6 50138097 50138283 -132276959 + MER97a DNA MER1_type? 266 445 -449 2314 105 7 0 chr6 50138283 50138587 -132276655 - AluSx SINE Alu -6 306 1 2056 178 77 46 chr6 50138587 50138792 -132276450 + MER97a DNA MER1_type? 445 683 -211 411 338 154 17 chr6 50139430 50139441 -132275801 + L1MC/D LINE L1 5423 5431 -2377 1892 171 0 0 chr6 50139441 50139766 -132275476 + AluSx SINE Alu 1 312 0 411 338 154 17 chr6 50139766 50139994 -132275248 + L1MC/D LINE L1 5431 5695 -2113 329 277 226 20 chr6 50140830 50141025 -132274217 + MIR SINE MIR 28 262 0 2585 57 0 13 chr6 50141110 50141456 -132273786 + AluY SINE Alu 1 342 0 2028 104 0 15 chr6 50142140 50142409 -132272833 - AluSx SINE Alu -13 299 35 288 288 109 74 chr6 50143965 50144169 -132271073 - MIR SINE MIR -22 240 30 203 282 43 51 chr6 50145033 50145150 -132270092 - MIR SINE MIR -119 143 28 244 261 268 0 chr6 50146142 50146295 -132268947 + LTR33 LTR ERVL 233 426 -95 279 0 0 0 chr6 50146378 50146409 -132268833 + (TG)n Simple_repeat Simple_repeat 2 32 0 295 317 57 0 chr6 50146461 50146584 -132268658 - MIR SINE MIR -80 182 53 306 236 101 22 chr6 50146594 50146683 -132268559 - L1MC/D LINE L1 -1990 5818 5723 204 354 24 0 chr6 50146779 50146863 -132268379 + MIR SINE MIR 76 160 -71 391 264 57 0 chr6 50148091 50148197 -132267045 + MER81 DNA DNA 1 112 -2 211 346 74 2 chr6 50148260 50148381 -132266861 - MIR SINE MIR -60 148 16 606 248 142 0 chr6 50149271 50149412 -132265830 - MER91A DNA MER1_type -35 161 1 707 219 19 44 chr6 50150884 50151089 -132264153 - L1ME2 LINE L1 0 6164 5965 1498 112 0 9 chr6 50151185 50151409 -132263833 - L1PA13 LINE L1 0 6163 5942 435 312 36 14 chr6 50151418 50151556 -132263686 - MIR3 SINE MIR -65 143 3 234 325 0 39 chr6 50153290 50153367 -132261875 - MER5A DNA MER1_type -55 134 61 383 247 178 23 chr6 50153400 50153619 -132261623 - L1ME4a LINE L1 -67 6054 5802 236 204 41 0 chr6 50153622 50153671 -132261571 - L1ME4a LINE L1 -438 5683 5633 264 163 43 98 chr6 50154236 50154328 -132260914 + MER53 DNA DNA 15 101 -88 * 350 105 53 53 chr6 50154253 50154329 -132260913 - MER53 DNA DNA -19 170 95 191 229 42 21 chr6 50154562 50154610 -132260632 - MIR SINE MIR -7 255 207 332 314 117 9 chr6 50155797 50156020 -132259222 - L1MC4a LINE L1 -1876 5932 5686 375 207 90 45 chr6 50156307 50156418 -132258824 - MER5A DNA MER1_type -73 116 1 1872 135 48 10 chr6 50156853 50157020 -132258222 - AluJo SINE Alu -12 300 116 267 31 0 0 chr6 50157020 50157052 -132258190 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1872 135 48 10 chr6 50157052 50157173 -132258069 - AluJo SINE Alu -196 116 1 237 269 22 66 chr6 50157251 50157433 -132257809 + (CAGAGA)n Simple_repeat Simple_repeat 2 175 0 721 266 115 22 chr6 50158641 50158953 -132256289 - MLT1I LTR MaLR -17 392 52 516 236 333 21 chr6 50159399 50159822 -132255420 + MLT1H1 LTR MaLR 1 555 0 965 161 17 0 chr6 50159992 50160166 -132255076 + L1MB2 LINE L1 5995 6171 0 358 315 63 0 chr6 50160768 50160895 -132254347 - MIR SINE MIR -21 241 107 1982 148 7 13 chr6 50161042 50161346 -132253896 + AluJo SINE Alu 11 312 0 544 229 32 38 chr6 50161370 50161527 -132253715 - L1ME3A LINE L1 -55 6115 5960 860 217 41 41 chr6 50162468 50162566 -132252676 + L2 LINE L2 2324 2421 -893 1120 230 88 100 chr6 50162566 50163167 -132252075 + MLT1G1 LTR MaLR 2 595 0 860 217 41 41 chr6 50163167 50163312 -132251930 + L2 LINE L2 2420 2567 -747 3070 167 25 75 chr6 50163363 50163728 -132251514 + MER21B LTR ERV1 118 437 -426 2185 151 74 20 chr6 50163728 50164132 -132251110 + MSTB LTR MaLR 1 426 0 3070 167 25 75 chr6 50164132 50164432 -132250810 + MER21B LTR ERV1 437 750 -113 380 315 197 19 chr6 50164503 50164561 -132250681 + L2 LINE L2 2555 2601 -712 2371 112 0 0 chr6 50164561 50164864 -132250378 - AluSp SINE Alu -10 303 1 380 315 197 19 chr6 50164864 50165307 -132249935 + L2 LINE L2 2601 3138 -175 245 61 0 0 chr6 50165371 50165404 -132249838 + U2 snRNA snRNA 1 33 -155 333 24 0 0 chr6 50165456 50165498 -132249744 - MADE1 DNA Mariner -34 46 5 519 198 27 9 chr6 50165509 50165620 -132249622 + L2 LINE L2 3177 3289 -24 363 264 72 16 chr6 50165643 50165768 -132249474 + MIR SINE MIR 103 234 -28 450 289 39 56 chr6 50166043 50166223 -132249019 - MIR3 SINE MIR -17 191 15 198 0 0 0 chr6 50166635 50166657 -132248585 + (A)n Simple_repeat Simple_repeat 1 22 0 527 284 67 0 chr6 50166758 50166892 -132248350 + MIR3 SINE MIR 49 191 -17 258 299 52 0 chr6 50167254 50167331 -132247911 + MIR SINE MIR 80 160 -102 445 159 0 0 chr6 50167666 50167729 -132247513 + AluJ/FRAM SINE Alu 214 276 -36 2436 64 0 0 chr6 50167735 50168037 -132247205 + AluY SINE Alu 1 302 0 991 173 5 74 chr6 50168139 50168341 -132246901 - MER5A DNA MER1_type 0 189 2 811 222 15 20 chr6 50169832 50170035 -132245207 - MIR SINE MIR -32 230 29 190 342 101 49 chr6 50170035 50170383 -132244859 + L2 LINE L2 2815 3180 -92 826 294 96 6 chr6 50170473 50170806 -132244436 + MLT1J LTR MaLR 1 363 -148 291 246 0 43 chr6 50171116 50171208 -132244034 + MER5B DNA MER1_type 74 146 -32 567 290 140 36 chr6 50171298 50171577 -132243665 - L2 LINE L2 -1 3312 3005 919 258 80 23 chr6 50171714 50172016 -132243226 - MLT1J1 LTR MaLR -125 321 3 395 299 8 0 chr6 50172018 50172152 -132243090 - L2 LINE L2 -354 2960 2826 2347 203 39 71 chr6 50172559 50173096 -132242146 - MLT1F LTR MaLR -1 541 22 422 337 25 12 chr6 50173370 50173533 -132241709 - MIR3 SINE MIR -5 203 39 266 345 26 0 chr6 50174475 50174588 -132240654 + MIR3 SINE MIR 81 196 -12 585 277 44 24 chr6 50175568 50175774 -132239468 - MLT1L LTR MaLR -321 294 85 321 26 0 0 chr6 50175967 50176005 -132239237 + (TG)n Simple_repeat Simple_repeat 1 38 0 203 197 197 0 chr6 50176952 50177018 -132238224 + L2 LINE L2 3136 3214 -58 636 296 42 50 chr6 50177290 50177530 -132237712 - MIR SINE MIR -20 242 5 296 264 183 37 chr6 50177715 50177961 -132237281 - MLT1L LTR MaLR -328 287 6 311 264 36 36 chr6 50178375 50178485 -132236757 - MIR SINE MIR -17 245 136 502 215 215 49 chr6 50178491 50178654 -132236588 + MIR SINE MIR 73 262 0 212 177 76 0 chr6 50178647 50178699 -132236543 - MIR SINE MIR -105 157 101 * 524 186 0 8 chr6 50178757 50178881 -132236361 + GA-rich Low_complexity Low_complexity 2 124 0 273 169 0 0 chr6 50178889 50178948 -132236294 + (ATG)n Simple_repeat Simple_repeat 3 61 0 206 194 15 0 chr6 50179012 50179079 -132236163 + (ATG)n Simple_repeat Simple_repeat 2 69 0 304 290 64 36 chr6 50179100 50179286 -132235956 - MIR SINE MIR -1 261 10 610 264 43 7 chr6 50179333 50179473 -132235769 - MER5B DNA MER1_type -7 171 27 354 183 11 65 chr6 50179866 50179891 -132235351 - MIR3 SINE MIR -36 172 147 1352 164 65 38 chr6 50179891 50180184 -132235058 - AluJo SINE Alu -11 301 1 354 183 11 65 chr6 50180184 50180251 -132234991 - MIR3 SINE MIR -61 147 85 21 0 0 0 chr6 50180335 50180356 -132234886 + AT_rich Low_complexity Low_complexity 1 21 0 292 245 51 71 chr6 50180903 50181001 -132234241 - L2 LINE L2 -52 3261 3166 186 345 124 44 chr6 50181051 50181222 -132234020 - L2 LINE L2 -1551 1763 1607 2289 81 10 7 chr6 50181222 50181532 -132233710 + AluSp SINE Alu 1 311 -2 186 345 124 44 chr6 50181532 50182177 -132233065 - L2 LINE L2 -1707 1607 882 227 263 90 23 chr6 50182199 50182332 -132232910 + L1MEd LINE L1 4 145 -5974 245 239 88 44 chr6 50182682 50182930 -132232312 + L1MEd LINE L1 688 940 -5181 722 322 106 42 chr6 50182943 50183311 -132231931 - L2 LINE L2 -2465 849 437 1811 269 29 12 chr6 50183311 50183821 -132231421 - LTR40a LTR ERVL 0 519 1 722 322 106 42 chr6 50183821 50183971 -132231271 - L2 LINE L2 -2877 437 298 371 250 138 48 chr6 50184145 50184333 -132230909 + MIR3 SINE MIR 3 207 -1 226 309 37 12 chr6 50184655 50184736 -132230506 + MIR SINE MIR 22 104 -158 336 305 52 69 chr6 50184859 50185265 -132229977 + MLT1K LTR MaLR 187 585 -3 347 259 52 81 chr6 50185271 50185445 -132229797 + MIR SINE MIR 88 256 -6 567 199 58 45 chr6 50185486 50185642 -132229600 - MIR SINE MIR -2 260 103 1447 167 34 128 chr6 50185994 50186407 -132228835 + MLT1A2 LTR MaLR 1 374 0 773 141 0 7 chr6 50186630 50186772 -132228470 + (GGAA)n Simple_repeat Simple_repeat 4 144 0 1985 206 18 55 chr6 50187292 50187658 -132227584 - L1MA9 LINE L1 -30 6282 5939 2296 109 0 0 chr6 50187658 50187971 -132227271 + AluSq SINE Alu 1 313 0 1985 206 18 55 chr6 50187971 50188113 -132227129 - L1MA9 LINE L1 -373 5939 5793 399 31 46 0 chr6 50188113 50188178 -132227064 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 16361 193 28 33 chr6 50188196 50194995 -132220247 - L1MA4A LINE L1 -7 6998 193 334 276 10 0 chr6 50195003 50195101 -132220141 - L1MA4A LINE L1 -6739 110 12 3412 181 27 14 chr6 50195112 50196289 -132218953 - L1MA9 LINE L1 -527 5785 4589 22 0 0 0 chr6 50197433 50197455 -132217787 + AT_rich Low_complexity Low_complexity 1 22 0 194 354 33 61 chr6 50197457 50197638 -132217604 + L2 LINE L2 2738 2913 -401 326 312 158 30 chr6 50198841 50199043 -132216199 + MLT1L LTR MaLR 167 394 -221 460 203 57 24 chr6 50199073 50199196 -132216046 + MLT1L LTR MaLR 481 607 -8 292 250 198 9 chr6 50200060 50200176 -132215066 + LTR16C LTR ERVL 218 355 -136 418 189 33 11 chr6 50201910 50202000 -132213242 - MER39 LTR ERV1 0 707 616 1234 219 106 15 chr6 50202192 50202589 -132212653 - LTR16A LTR ERVL 0 450 18 435 265 10 0 chr6 50204069 50204171 -132211071 - MIR SINE MIR -137 125 23 204 239 0 22 chr6 50204911 50204957 -132210285 - L2 LINE L2 -24 3248 3204 902 279 67 20 chr6 50205002 50205404 -132209838 - LTR16A LTR ERVL -22 428 8 475 246 127 7 chr6 50205405 50205547 -132209695 - MIR SINE MIR -84 178 20 218 182 0 23 chr6 50205978 50206022 -132209220 - L2 LINE L2 -10 3262 3220 2048 181 52 45 chr6 50206595 50207059 -132208183 + MLT1C LTR MaLR 1 467 0 420 240 0 19 chr6 50207835 50207939 -132207303 + MER103 DNA DNA 8 109 -57 2225 80 10 10 chr6 50208059 50208360 -132206882 + AluSc SINE Alu 1 301 -8 2382 114 13 26 chr6 50208970 50209348 -132205894 + THE1C LTR MaLR 3 375 0 304 239 127 66 chr6 50209567 50209768 -132205474 + MER51A LTR ERV1 343 566 -68 219 69 0 0 chr6 50210970 50210999 -132204243 + (TCCCC)n Simple_repeat Simple_repeat 2 30 0 791 288 154 23 chr6 50211459 50211893 -132203349 + MLT1L LTR MaLR 125 615 0 202 313 31 62 chr6 50211909 50212005 -132203237 - L2 LINE L2 -25 3247 3155 746 209 63 6 chr6 50212077 50212235 -132203007 - MER58A DNA MER1_type 0 167 1 1039 159 208 80 chr6 50212878 50213229 -132202013 - MSTD LTR MaLR 0 396 1 1936 133 3 7 chr6 50215016 50215309 -132199933 + AluSx SINE Alu 1 292 -20 610 188 150 56 chr6 50215361 50215427 -132199815 + MER5A DNA MER1_type 9 67 -122 1625 174 7 4 chr6 50215427 50215737 -132199505 + AluJo SINE Alu 1 311 0 610 188 150 56 chr6 50215737 50215829 -132199413 + MER5A DNA MER1_type 67 183 -6 631 131 0 10 chr6 50216269 50216368 -132198874 + MER4A LTR ERV1 1 98 -566 1951 91 30 79 chr6 50216368 50216731 -132198511 + MER4A LTR ERV1 261 664 0 544 231 55 30 chr6 50216885 50217084 -132198158 + LTR67 LTR ERVL 352 555 -2 266 115 66 49 chr6 50218304 50218365 -132196877 + L1MC/D LINE L1 5703 5764 -2044 252 198 0 0 chr6 50218379 50218427 -132196815 - AluJ/FLAM SINE Alu -241 61 20 239 183 0 33 chr6 50218792 50218852 -132196390 - L1ME LINE L1 -216 5905 5848 195 69 0 0 chr6 50219161 50219190 -132196052 + (CCCCCA)n Simple_repeat Simple_repeat 5 33 0 1825 111 67 4 chr6 50219195 50219465 -132195777 + MER1B DNA MER1_type 52 338 -1 1058 194 0 84 chr6 50219569 50219853 -132195389 + AluJo SINE Alu 1 260 -52 285 350 20 0 chr6 50220148 50220248 -132194994 + L3b LINE CR1 1228 1329 -254 269 250 56 19 chr6 50220853 50220961 -132194281 - MIR3 SINE MIR -12 196 85 1399 239 99 50 chr6 50221181 50221645 -132193597 + LTR16C LTR ERVL 1 487 -4 646 289 102 30 chr6 50221876 50222111 -132193131 - MIR SINE MIR -10 252 1 357 323 60 45 chr6 50223117 50223250 -132191992 - L2 LINE L2 -17 3255 3121 468 316 53 16 chr6 50223348 50223535 -132191707 + MIR3 SINE MIR 13 206 -2 308 309 79 0 chr6 50223646 50223772 -132191470 - L3b LINE CR1 -145 1438 1303 475 147 112 26 chr6 50224317 50224433 -132190809 + MIR SINE MIR 70 195 -67 263 298 149 18 chr6 50224492 50224660 -132190582 + Charlie8 DNA MER1_type 92 281 -2136 606 250 76 6 chr6 50225004 50225183 -132190059 - MIR SINE MIR -33 229 38 656 145 94 0 chr6 50225346 50225463 -132189779 + MER20 DNA MER1_type 88 215 -4 844 170 0 53 chr6 50225475 50225646 -132189596 - FRAM SINE Alu -14 162 1 361 206 134 10 chr6 50225803 50225900 -132189342 - MIR3 SINE MIR -4 204 96 870 176 74 0 chr6 50226112 50226288 -132188954 - MER5A DNA MER1_type 0 189 1 442 281 94 12 chr6 50227636 50227807 -132187435 - MIR3 SINE MIR -7 201 17 351 268 0 0 chr6 50227917 50227999 -132187243 + L2 LINE L2 3186 3267 -5 2097 108 7 0 chr6 50228465 50228762 -132186480 - AluSx SINE Alu -13 299 1 188 325 34 51 chr6 50229177 50229294 -132185948 + MIR SINE MIR 49 163 -99 180 290 43 14 chr6 50229324 50229393 -132185849 + L3 LINE CR1 129 199 -1378 368 283 183 43 chr6 50232101 50232331 -132182911 - L1ME4a LINE L1 -172 5949 5688 38 51 0 0 chr6 50232345 50232404 -132182838 + AT_rich Low_complexity Low_complexity 1 59 0 216 0 0 0 chr6 50232411 50232435 -132182807 + (T)n Simple_repeat Simple_repeat 1 24 0 335 245 122 0 chr6 50232439 50232537 -132182705 - L1ME4a LINE L1 -35 6086 5977 180 312 78 0 chr6 50233614 50233691 -132181551 - L2 LINE L2 -42 3230 3148 585 250 90 0 chr6 50233713 50233869 -132181373 - MIR SINE MIR -6 256 87 426 213 32 0 chr6 50233960 50234054 -132181188 - MIR SINE MIR -63 145 49 323 269 39 0 chr6 50235092 50235170 -132180072 - MIR SINE MIR -77 185 105 202 306 111 0 chr6 50236368 50236440 -132178802 + MIR3 SINE MIR 109 188 -20 1499 191 34 7 chr6 50237329 50237622 -132177620 + AluJo SINE Alu 1 301 -11 205 300 0 53 chr6 50237627 50237765 -132177477 + MIR SINE MIR 94 220 -42 1845 116 18 4 chr6 50237782 50238101 -132177141 + AluSx SINE Alu 1 323 0 202 250 29 44 chr6 50238321 50238389 -132176853 + L2 LINE L2 2987 3053 -219 * 414 328 26 25 chr6 50238385 50238636 -132176606 - L2 LINE L2 -301 3012 2710 265 320 58 0 chr6 50238671 50238774 -132176468 - L2 LINE L2 -785 2529 2421 1436 263 88 26 chr6 50238997 50239499 -132175743 - MLT1E LTR MaLR -47 546 14 1211 105 0 0 chr6 50240073 50240245 -132174997 - AluSg/x SINE Alu -4 306 135 283 280 54 11 chr6 50240250 50240343 -132174899 - MIR SINE MIR -118 144 48 310 274 0 0 chr6 50240410 50240472 -132174770 - L2 LINE L2 -86 3186 3125 209 306 16 16 chr6 50240572 50240634 -132174608 - MER5A DNA MER1_type 0 189 128 850 262 46 30 chr6 50241153 50241458 -132173784 + L2 LINE L2 2997 3306 -7 602 156 148 0 chr6 50242842 50242964 -132172278 - MER103 DNA DNA -11 155 16 242 253 0 81 chr6 50243570 50243657 -132171585 - MIR SINE MIR -70 192 113 1023 208 51 51 chr6 50243871 50244184 -132171058 - L1MC5 LINE L1 -433 7528 7216 292 137 78 0 chr6 50244490 50244541 -132170701 - Alu SINE Alu -12 290 236 901 148 0 0 chr6 50244541 50244676 -132170566 + AluJo SINE Alu 17 151 -161 453 222 0 0 chr6 50244676 50244757 -132170485 - AluJb SINE Alu -91 221 141 307 186 0 0 chr6 50244757 50244811 -132170431 - Alu SINE Alu -258 44 2 1343 249 94 15 chr6 50245044 50245446 -132169796 + MLT1J2 LTR MaLR 17 450 0 324 0 0 0 chr6 50246241 50246277 -132168965 + (CA)n Simple_repeat Simple_repeat 2 37 0 4734 163 29 29 chr6 50246340 50247643 -132167599 + L1MB7 LINE L1 4867 6174 -10 962 227 72 0 chr6 50247663 50247870 -132167372 + MIR SINE MIR 31 252 -10 390 325 56 25 chr6 50248630 50248790 -132166452 + MIR3 SINE MIR 21 185 -23 375 221 13 0 chr6 50249586 50249663 -132165579 - L2 LINE L2 0 3313 3236 332 341 24 0 chr6 50249670 50249796 -132165446 - L2 LINE L2 -385 2929 2801 350 288 94 12 chr6 50250004 50250156 -132165086 + MIR SINE MIR 15 173 -61 636 242 37 0 chr6 50250267 50250428 -132164814 - LTR67 LTR ERVL -13 544 378 327 104 0 0 chr6 50250991 50251039 -132164203 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 225 310 14 0 chr6 50251266 50251337 -132163905 + MIR SINE MIR 36 107 -101 267 315 122 11 chr6 50251338 50251519 -132163723 - MLT1K LTR MaLR 0 588 388 641 290 89 37 chr6 50253789 50254979 -132160263 - L1MEd LINE L1 -3783 2630 1266 251 344 48 40 chr6 50255086 50255211 -132160031 + L2 LINE L2 3137 3262 -10 42892 58 2 1 chr6 50255868 50262009 -132153233 - L1PA5 LINE L1 -8 6146 3 2024 145 0 0 chr6 50262583 50262894 -132152348 - AluSx SINE Alu -1 311 1 284 235 243 0 chr6 50262989 50263077 -132152165 - MIR SINE MIR -63 145 43 180 0 0 0 chr6 50263178 50263198 -132152044 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 228 227 0 0 chr6 50263419 50263463 -132151779 + L2 LINE L2 3221 3264 -8 200 294 18 55 chr6 50263462 50263571 -132151671 + MIR SINE MIR 101 205 -57 * 1107 215 0 82 chr6 50264384 50264446 -132150796 - MIR SINE MIR 0 262 196 915 224 136 69 chr6 50264446 50264665 -132150577 - MLT1C LTR MaLR 0 467 264 210 37 0 0 chr6 50264665 50264692 -132150550 + (TC)n Simple_repeat Simple_repeat 2 28 0 1836 151 7 0 chr6 50264692 50264983 -132150259 - AluSx SINE Alu -19 293 1 915 224 136 69 chr6 50264983 50265196 -132150046 - MLT1C LTR MaLR -202 265 5 1107 215 0 82 chr6 50265196 50265412 -132149830 - MIR SINE MIR -66 196 7 1545 162 4 0 chr6 50265641 50265928 -132149314 + AluJo SINE Alu 28 315 0 531 265 108 34 chr6 50267267 50267579 -132147663 + MLT1I LTR MaLR 66 450 0 327 255 165 41 chr6 50267617 50267739 -132147503 - MIR SINE MIR -37 171 59 1605 259 95 71 chr6 50268235 50268279 -132146963 - L1MC4a LINE L1 -816 5330 5289 255 31 0 0 chr6 50268279 50268311 -132146931 + (TA)n Simple_repeat Simple_repeat 1 32 0 1605 259 95 71 chr6 50268311 50268897 -132146345 - L1MC4a LINE L1 -857 5289 5495 1450 174 61 17 chr6 50268897 50269191 -132146051 - AluJo SINE Alu -4 308 2 1605 259 95 71 chr6 50269191 50270227 -132145015 - L1MC4a LINE L1 -650 5496 4487 298 260 49 16 chr6 50270857 50270980 -132144262 - L1ME3A LINE L1 -2 6168 6042 673 121 0 0 chr6 50270981 50271072 -132144170 + AluJ/FLAM SINE Alu 2 92 -220 1331 196 29 14 chr6 50271072 50271348 -132143894 + AluJo SINE Alu 33 312 0 273 138 277 15 chr6 50271350 50271415 -132143827 - L1ME3 LINE L1 -113 6049 5968 183 288 61 0 chr6 50273045 50273111 -132142131 + L2 LINE L2 3019 3088 -225 982 165 16 22 chr6 50273121 50273303 -132141939 - AluJo SINE Alu -15 297 117 598 292 6 28 chr6 50273308 50273401 -132141841 + L2 LINE L2 3140 3229 -84 416 70 0 200 chr6 50273401 50273501 -132141741 + MADE1 DNA Mariner 1 80 0 598 292 6 28 chr6 50273501 50273585 -132141657 + L2 LINE L2 3229 3313 0 204 346 13 0 chr6 50274163 50274241 -132141001 + MIR SINE MIR 174 252 -10 519 277 8 0 chr6 50276024 50276154 -132139088 - MER94 DNA DNA -2 132 2 2037 128 0 24 chr6 50276177 50276474 -132138768 + AluSx SINE Alu 3 292 -20 278 293 61 0 chr6 50278246 50278345 -132136897 + MIR SINE MIR 32 136 -126 390 286 8 40 chr6 50278543 50278669 -132136573 - MIR SINE MIR -118 144 23 629 277 66 14 chr6 50280238 50280451 -132134791 + MIR SINE MIR 24 247 -15 228 194 90 30 chr6 50280473 50280540 -132134702 - L2 LINE L2 -31 3282 3212 229 274 24 48 chr6 50280655 50280739 -132134503 + MLT1J LTR MaLR 99 180 -331 1039 206 37 18 chr6 50280879 50281097 -132134145 + MER58A DNA MER1_type 1 222 -2 300 219 0 0 chr6 50281318 50281382 -132133860 - LTR67 LTR ERVL -10 547 484 1305 239 116 26 chr6 50281667 50282132 -132133110 + MLT1J LTR MaLR 5 511 0 1563 212 63 47 chr6 50282581 50283072 -132132170 - MLT1D LTR MaLR 0 505 7 2560 148 24 24 chr6 50283076 50283501 -132131741 + MSTB LTR MaLR 2 426 0 831 277 56 12 chr6 50283525 50283640 -132131602 - MIR SINE MIR -1 261 153 1592 211 116 75 chr6 50283640 50283806 -132131436 + MLT1E LTR MaLR 1 159 -434 2446 80 10 0 chr6 50283806 50284108 -132131134 + AluSq SINE Alu 1 305 -8 1592 211 116 75 chr6 50284108 50284511 -132130731 + MLT1E LTR MaLR 159 593 0 831 277 56 12 chr6 50284511 50284644 -132130598 - MIR SINE MIR -109 153 2 301 352 37 0 chr6 50285818 50285926 -132129316 + MIR SINE MIR 35 146 -62 2167 218 72 58 chr6 50285966 50286447 -132128795 - MLT1E LTR MaLR -2 591 99 2356 92 10 0 chr6 50286447 50286751 -132128491 + AluSp SINE Alu 1 307 -6 2167 218 72 58 chr6 50286751 50286852 -132128390 - MLT1E LTR MaLR -494 99 1 945 291 47 6 chr6 50287476 50287796 -132127446 + MLT1I LTR MaLR 59 391 -18 1324 220 17 10 chr6 50288014 50288305 -132126937 - AluJo SINE Alu -19 293 1 572 169 93 25 chr6 50288311 50288429 -132126813 - FLAM_A SINE Alu -3 130 5 926 113 57 0 chr6 50288669 50288810 -132126432 + MLT1A1 LTR MaLR 171 319 -46 230 358 25 0 chr6 50288822 50288903 -132126339 - MIR3 SINE MIR -28 180 98 211 143 0 0 chr6 50289881 50289916 -132125326 + L2 LINE L2 3217 3251 -21 2136 144 67 31 chr6 50290936 50291353 -132123889 - MLT1C LTR MaLR 0 467 36 180 0 0 0 chr6 50291534 50291554 -132123688 + (TCCA)n Simple_repeat Simple_repeat 2 21 0 180 111 0 0 chr6 50291559 50291586 -132123656 + (CA)n Simple_repeat Simple_repeat 1 27 0 392 238 98 42 chr6 50291689 50291832 -132123410 + MIR SINE MIR 20 170 -92 228 342 61 26 chr6 50292209 50292323 -132122919 - L2 LINE L2 0 3272 3155 483 250 0 92 chr6 50293426 50293590 -132121652 + MIR3 SINE MIR 57 205 -3 2118 136 0 3 chr6 50294180 50294481 -132120761 - AluSx SINE Alu -12 300 1 199 262 205 0 chr6 50294594 50294716 -132120526 + MIR SINE MIR 116 262 0 197 237 17 0 chr6 50294900 50294959 -132120283 + CT-rich Low_complexity Low_complexity 3 62 0 439 239 151 28 chr6 50294987 50295271 -132119971 - L1ME4a LINE L1 -4 6117 5799 789 262 47 5 chr6 50295675 50295889 -132119353 + MIR SINE MIR 40 262 0 22 0 0 0 chr6 50296401 50296423 -132118819 + AT_rich Low_complexity Low_complexity 1 22 0 581 207 0 6 chr6 50297774 50297953 -132117289 + (TG)n Simple_repeat Simple_repeat 1 178 0 230 213 0 12 chr6 50298012 50298092 -132117150 + (TG)n Simple_repeat Simple_repeat 1 79 0 237 259 59 24 chr6 50298580 50298665 -132116577 + MIR SINE MIR 105 192 -70 545 226 7 0 chr6 50299100 50299246 -132115996 + (TG)n Simple_repeat Simple_repeat 1 147 0 424 264 147 48 chr6 50300137 50300429 -132114813 - MLT1L LTR MaLR 0 615 295 273 175 88 0 chr6 50300851 50300908 -132114334 + MIR SINE MIR 106 167 -95 543 128 0 0 chr6 50301701 50301787 -132113455 + (TC)n Simple_repeat Simple_repeat 1 86 0 1840 205 12 11 chr6 50303642 50304197 -132111045 - MER82 DNA MER2_type 0 653 8 21 57 0 0 chr6 50304341 50304376 -132110866 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr6 50304416 50304448 -132110794 + AT_rich Low_complexity Low_complexity 1 32 0 464 250 22 15 chr6 50304511 50304647 -132110595 - MLT1B LTR MaLR -46 344 208 1707 239 3 0 chr6 50304664 50305003 -132110239 - MER58B DNA MER1_type -1 340 1 598 249 98 30 chr6 50305013 50305280 -132109962 - L1MC4a LINE L1 -303 5818 5585 2077 117 0 20 chr6 50305455 50305753 -132109489 + AluSx SINE Alu 5 296 -16 202 219 137 41 chr6 50306504 50306577 -132108665 - L2 LINE L2 -2 3311 3232 3970 144 16 13 chr6 50306775 50307449 -132107793 - L1MC1 LINE L1 -2 6331 5656 187 311 163 24 chr6 50307544 50307753 -132107489 - L2 LINE L2 -339 2975 2738 205 311 40 14 chr6 50307871 50307945 -132107297 - L2 LINE L2 -2 3311 3236 354 272 32 8 chr6 50308863 50308988 -132106254 + LTR67 LTR ERVL 4 131 -426 401 248 97 14 chr6 50309170 50309315 -132105927 + LTR67 LTR ERVL 401 557 0 1395 201 88 23 chr6 50309320 50309663 -132105579 - MLT1A1 LTR MaLR 0 365 1 3076 124 7 9 chr6 50309689 50310147 -132105095 + L1PA16 LINE L1 5710 6166 0 237 268 83 83 chr6 50310365 50310533 -132104709 - MIR3 SINE MIR -3 205 38 734 263 148 41 chr6 50310894 50311380 -132103862 - MLT1H1 LTR MaLR -2 553 16 2366 103 0 6 chr6 50311392 50311704 -132103538 - AluSx SINE Alu -2 310 1 305 301 0 14 chr6 50311734 50311807 -132103435 - MIR SINE MIR -84 124 53 296 321 9 71 chr6 50312052 50312164 -132103078 - MIR SINE MIR -88 120 16 217 309 0 60 chr6 50312313 50312397 -132102845 - MIR3 SINE MIR -12 196 118 228 338 0 0 chr6 50312629 50312697 -132102545 - L2 LINE L2 -2 3270 3203 2293 111 7 7 chr6 50313855 50314161 -132101081 + AluSx SINE Alu 1 306 -6 225 293 21 0 chr6 50314513 50314582 -132100660 - MIR SINE MIR -50 158 86 189 256 0 0 chr6 50315149 50315192 -132100050 + MIR SINE MIR 112 154 -108 699 267 104 30 chr6 50315495 50315746 -132099496 - L1MEd LINE L1 -4887 1232 1001 2081 127 7 3 chr6 50315746 50316045 -132099197 - AluSq SINE Alu -13 300 1 699 267 104 30 chr6 50316045 50316253 -132098989 - L1MEd LINE L1 -5118 1001 739 309 326 47 23 chr6 50316255 50316384 -132098858 + MIR SINE MIR 130 261 -1 207 284 40 14 chr6 50317273 50317347 -132097895 + MIR SINE MIR 89 164 -98 256 196 43 98 chr6 50317432 50317461 -132097781 + L2 LINE L2 3133 3162 -110 2661 23 0 32 chr6 50317461 50317769 -132097473 + AluYa5 SINE Alu 1 298 -13 256 196 43 98 chr6 50317769 50317831 -132097411 + L2 LINE L2 3162 3219 -53 1891 153 16 19 chr6 50318644 50318957 -132096285 - AluJb SINE Alu 0 312 1 1656 223 88 54 chr6 50320007 50320510 -132094732 + MLT2B1 LTR ERVL 1 520 0 747 147 21 0 chr6 50320782 50320925 -132094317 + L1MC3 LINE L1 6937 7082 -703 304 288 45 27 chr6 50320925 50321036 -132094206 + MLT1F1 LTR MaLR 25 137 -430 2592 171 46 34 chr6 50321049 50321617 -132093625 + L1MD3 LINE L1 7421 7995 0 649 253 42 32 chr6 50321819 50322009 -132093233 - MIR SINE MIR -24 238 47 2083 116 0 11 chr6 50322023 50322307 -132092935 + AluSq SINE Alu 25 305 -8 234 0 0 0 chr6 50322393 50322419 -132092823 + (CA)n Simple_repeat Simple_repeat 1 26 0 1089 168 25 0 chr6 50322542 50322738 -132092504 + MER20 DNA MER1_type 1 201 -18 637 268 6 22 chr6 50323133 50323312 -132091930 + MER5B DNA MER1_type 1 176 -2 484 238 146 12 chr6 50323440 50323604 -132091638 - MER5A DNA MER1_type 0 189 4 200 128 0 26 chr6 50323787 50323826 -132091416 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 201 74 0 0 chr6 50325678 50325705 -132089537 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 398 301 178 10 chr6 50325941 50326151 -132089091 + MIR SINE MIR 16 255 -7 788 100 0 9 chr6 50326396 50326506 -132088736 + AluJb SINE Alu 2 110 -202 845 149 91 0 chr6 50326506 50326660 -132088582 + AluSg/x SINE Alu 143 310 0 332 140 43 21 chr6 50326684 50326777 -132088465 + GA-rich Low_complexity Low_complexity 2 96 0 680 244 112 11 chr6 50326861 50327061 -132088181 - MIR SINE MIR -6 256 34 188 65 0 32 chr6 50327086 50327117 -132088125 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 333 47 0 0 chr6 50328724 50328767 -132086475 + (CA)n Simple_repeat Simple_repeat 2 44 0 1909 160 3 6 chr6 50329598 50329911 -132085331 + AluJb SINE Alu 1 312 0 1454 133 74 27 chr6 50329956 50330212 -132085030 - L1MB5 LINE L1 0 6174 5907 750 233 296 8 chr6 50330231 50330583 -132084659 - L1ME3A LINE L1 0 6170 5718 365 233 12 12 chr6 50332157 50332171 -132083071 - MIR3 SINE MIR -33 175 162 308 275 62 42 chr6 50332171 50332364 -132082878 + MER117 DNA MER1_type 1 197 0 365 233 12 12 chr6 50332364 50332435 -132082807 - MIR3 SINE MIR -45 163 90 213 121 0 0 chr6 50332682 50332715 -132082527 + (T)n Simple_repeat Simple_repeat 1 33 0 259 264 11 22 chr6 50332991 50333082 -132082160 + L2 LINE L2 3144 3233 -39 1517 216 65 51 chr6 50333464 50333860 -132081382 - L1MC5 LINE L1 -49 7912 7504 1005 171 40 54 chr6 50333860 50334082 -132081160 + MER20 DNA MER1_type 1 219 0 1517 216 65 51 chr6 50334082 50334253 -132080989 - L1MC5 LINE L1 -457 7504 7337 194 277 92 0 chr6 50335132 50335197 -132080045 - L2 LINE L2 -47 3266 3196 221 300 43 0 chr6 50335273 50335343 -132079899 - L2 LINE L2 -222 3050 2978 357 271 156 15 chr6 50335452 50335651 -132079591 - L2 LINE L2 -538 2776 2550 313 93 0 0 chr6 50336333 50336376 -132078866 + (TC)n Simple_repeat Simple_repeat 1 43 0 324 211 16 49 chr6 50338748 50338871 -132076371 + GA-rich Low_complexity Low_complexity 4 122 0 202 237 62 44 chr6 50340157 50340249 -132074993 - MIR SINE MIR -57 151 56 1037 253 96 33 chr6 50340823 50341218 -132074024 + MARNA DNA Mariner 9 428 -158 219 354 122 33 chr6 50341285 50341466 -132073776 - MIR SINE MIR -19 243 47 439 248 43 21 chr6 50342083 50342224 -132073018 + LTR67 LTR ERVL 405 548 -9 277 268 163 33 chr6 50342274 50342427 -132072815 - MIR SINE MIR -13 249 77 264 272 0 68 chr6 50343308 50343455 -132071787 + CT-rich Low_complexity Low_complexity 1 137 0 230 272 0 33 chr6 50343528 50343620 -132071622 + CT-rich Low_complexity Low_complexity 3 91 0 338 284 118 66 chr6 50343735 50344143 -132071099 - MLT1K LTR MaLR -23 565 137 393 281 59 30 chr6 50344348 50344483 -132070759 + MIR SINE MIR 12 150 -112 516 327 94 9 chr6 50344959 50345182 -132070060 + MIR SINE MIR 20 261 -1 375 229 0 0 chr6 50345320 50345390 -132069852 - L2 LINE L2 -4 3309 3240 436 198 91 41 chr6 50345392 50345513 -132069729 - MER91C DNA MER1_type -3 137 11 755 294 78 8 chr6 50345612 50345867 -132069375 - L2 LINE L2 -492 2822 2550 278 372 33 0 chr6 50346893 50347014 -132068228 - L2 LINE L2 0 3313 3189 185 289 40 40 chr6 50347230 50347306 -132067936 + L3 LINE CR1 249 324 -1253 706 228 18 73 chr6 50347311 50347372 -132067870 - MIR SINE MIR -54 208 145 3015 124 30 18 chr6 50347372 50347872 -132067370 - L1MA4A LINE L1 -6 6297 5792 706 228 18 73 chr6 50347872 50348029 -132067213 - MIR SINE MIR -117 145 2 232 305 114 23 chr6 50348157 50348288 -132066954 + L3 LINE CR1 475 617 -960 1143 195 211 65 chr6 50349024 50349440 -132065802 - MLT1E2 LTR MaLR 0 626 150 219 242 0 0 chr6 50349605 50349667 -132065575 + (CA)n Simple_repeat Simple_repeat 1 62 0 232 255 0 0 chr6 50350235 50350282 -132064960 + (CA)n Simple_repeat Simple_repeat 1 47 0 578 281 116 22 chr6 50350625 50350892 -132064350 - MLT1L LTR MaLR 0 615 324 613 73 0 73 chr6 50351018 50351114 -132064128 - L1PA5 LINE L1 0 6154 6066 1346 20 0 0 chr6 50351114 50351266 -132063976 + L1PA5 LINE L1 5825 5976 -178 296 184 246 53 chr6 50351580 50351694 -132063548 - L2 LINE L2 -1 3271 3136 841 250 50 0 chr6 50351879 50352079 -132063163 - MER63A DNA MER1_type 0 210 1 210 94 0 0 chr6 50352618 50352650 -132062592 + L2 LINE L2 3028 3059 -213 21 36 0 0 chr6 50352814 50352842 -132062400 + AT_rich Low_complexity Low_complexity 1 28 0 216 237 158 0 chr6 50353338 50353414 -132061828 + L2 LINE L2 3221 3308 -5 279 0 0 0 chr6 50355640 50355671 -132059571 + (CA)n Simple_repeat Simple_repeat 2 32 0 325 316 38 22 chr6 50355755 50355897 -132059345 + LTR33A LTR ERVL 9 174 -349 230 182 121 30 chr6 50356193 50356259 -132058983 + MLT1L LTR MaLR 27 98 -517 292 230 0 69 chr6 50356376 50356463 -132058779 + MLT1J LTR MaLR 229 309 -202 1827 125 50 0 chr6 50356592 50356872 -132058370 + AluSx SINE Alu 2 295 -17 2030 141 0 3 chr6 50357498 50357804 -132057438 + AluSx SINE Alu 1 305 -7 10270 162 28 5 chr6 50358123 50360986 -132054256 - L1PB1 LINE L1 -2 6149 3227 939 106 0 0 chr6 50360986 50361118 -132054124 - AluSp SINE Alu -181 132 1 260 188 138 50 chr6 50361602 50361682 -132053560 + MER31-int LTR ERV1 3402 3488 -1448 904 221 0 0 chr6 50361807 50361970 -132053272 + FRAM SINE Alu 4 166 0 348 94 0 0 chr6 50361973 50362026 -132053216 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 353 230 25 129 chr6 50362039 50362317 -132052925 + MER31-int LTR ERV1 3625 3873 -1063 2175 125 0 0 chr6 50362327 50362639 -132052603 + AluSx SINE Alu 1 312 0 244 120 40 0 chr6 50362645 50362695 -132052547 + GA-rich Low_complexity Low_complexity 2 53 0 452 277 76 33 chr6 50363126 50363310 -132051932 + LTR37B LTR ERV1 7 198 -270 662 195 85 6 chr6 50363382 50363546 -132051696 + LTR37B LTR ERV1 198 374 -94 2320 71 0 0 chr6 50363914 50364209 -132051033 + AluY SINE Alu 1 295 -16 228 223 11 106 chr6 50364648 50364742 -132050500 + L3 LINE CR1 640 724 -853 321 345 35 15 chr6 50365403 50365603 -132049639 + LTR33 LTR ERVL 15 218 -303 506 250 22 0 chr6 50365696 50365832 -132049410 + LTR33 LTR ERVL 380 518 -3 2026 105 3 14 chr6 50365901 50366218 -132049024 + AluSx SINE Alu 1 314 0 24 32 0 0 chr6 50366800 50366831 -132048411 + AT_rich Low_complexity Low_complexity 1 31 0 6218 16 1 1 chr6 50366831 50367533 -132047709 - L1PA2 LINE L1 -1 6154 5453 351 0 0 0 chr6 50368911 50368950 -132046292 + (CA)n Simple_repeat Simple_repeat 1 39 0 310 196 36 0 chr6 50369767 50369823 -132045419 - L2 LINE L2 0 3272 3215 517 286 94 6 chr6 50369826 50369997 -132045245 + MIR SINE MIR 28 213 -49 228 338 14 10 chr6 50370659 50370756 -132044486 + MIR SINE MIR 20 116 -110 225 94 0 0 chr6 50371685 50371717 -132043525 + (TC)n Simple_repeat Simple_repeat 1 32 0 259 324 14 0 chr6 50371792 50371866 -132043376 + L2 LINE L2 3238 3312 -1 217 174 22 0 chr6 50371941 50371987 -132043255 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 712 288 47 47 chr6 50371988 50372307 -132042935 + MLT1J LTR MaLR 114 432 -79 291 93 0 0 chr6 50372791 50372834 -132042408 + (TG)n Simple_repeat Simple_repeat 1 43 0 180 305 84 42 chr6 50373638 50373733 -132041509 + MIR SINE MIR 40 138 -70 436 267 121 47 chr6 50373870 50374103 -132041139 + MIR SINE MIR 3 262 0 500 282 77 31 chr6 50374433 50374628 -132040614 - MIR SINE MIR -34 228 25 546 128 0 0 chr6 50375162 50375256 -132039986 + (CA)n Simple_repeat Simple_repeat 1 94 0 211 250 21 104 chr6 50378607 50378703 -132036539 + MIR SINE MIR 106 193 -69 337 129 0 0 chr6 50379067 50379129 -132036113 + L1MA4 LINE L1 6237 6298 -2 2209 138 10 68 chr6 50379752 50380164 -132035078 - MLT1B LTR MaLR 0 390 3 2486 121 22 0 chr6 50380391 50380747 -132034495 - THE1B LTR MaLR 0 364 1 204 260 73 65 chr6 50380753 50380876 -132034366 - L2 LINE L2 -83 3230 3107 2419 74 0 0 chr6 50380879 50381177 -132034065 + AluSc SINE Alu 1 298 -11 1192 176 67 5 chr6 50381191 50381401 -132033841 + MER58A DNA MER1_type 2 224 0 223 354 61 27 chr6 50381459 50381606 -132033636 - L2 LINE L2 -222 3050 2899 237 345 121 48 chr6 50381701 50381866 -132033376 - L2 LINE L2 -56 3216 3040 2199 116 0 0 chr6 50381941 50382243 -132032999 + AluSx SINE Alu 1 302 -10 431 271 26 57 chr6 50382261 50382453 -132032789 - MIR SINE MIR -30 232 47 224 282 103 13 chr6 50385123 50385201 -132030041 - MIR3 SINE MIR -14 194 110 545 301 44 11 chr6 50385337 50385520 -132029722 + MIR SINE MIR 51 239 -23 2186 167 0 19 chr6 50385543 50385915 -132029327 - MLT1A1 LTR MaLR 0 365 1 859 304 81 69 chr6 50389131 50389740 -132025502 + L2 LINE L2 2332 2947 -367 1930 120 0 28 chr6 50389911 50390236 -132025006 - AluSg SINE Alu 0 317 1 379 313 93 4 chr6 50390698 50390957 -132024285 - L1ME4a LINE L1 -22 6099 5818 1157 275 104 13 chr6 50391284 50391677 -132023565 + MLT1J2 LTR MaLR 1 429 -21 364 288 82 24 chr6 50392513 50392683 -132022559 + MIR SINE MIR 54 233 -29 1073 141 191 5 chr6 50392686 50392885 -132022357 - MER46A DNA MER2_type 0 236 1 21 36 0 0 chr6 50393031 50393059 -132022183 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr6 50393492 50393512 -132021730 + (CA)n Simple_repeat Simple_repeat 1 20 0 418 186 269 19 chr6 50395157 50395313 -132019929 + MLT1H LTR MaLR 87 281 -268 655 132 70 18 chr6 50395370 50395484 -132019758 + MLT1H LTR MaLR 430 549 0 456 35 0 0 chr6 50396325 50396383 -132018859 + (TG)n Simple_repeat Simple_repeat 2 59 0 464 202 379 8 chr6 50397114 50397362 -132017880 + Charlie4a DNA MER1_type 1 340 -168 3679 144 48 22 chr6 50397362 50397587 -132017655 + L1MB3 LINE L1 5446 5664 -519 1854 62 49 4 chr6 50397587 50397831 -132017411 + AluY SINE Alu 35 289 -22 3679 144 48 22 chr6 50397831 50398293 -132016949 + L1MB3 LINE L1 5664 6151 -32 622 269 23 0 chr6 50398328 50398503 -132016739 + Charlie4a DNA MER1_type 330 508 0 600 238 8 8 chr6 50398876 50399002 -132016240 + MIR SINE MIR 47 172 -90 290 283 36 7 chr6 50399509 50399647 -132015595 + (CACG)n Simple_repeat Simple_repeat 4 145 0 445 119 15 0 chr6 50400464 50400531 -132014711 - MIR SINE MIR -110 152 85 1245 243 199 20 chr6 50401021 50401613 -132013629 + MER20B DNA MER1_type 86 783 0 266 253 13 63 chr6 50401648 50401727 -132013515 - L3 LINE CR1 -5 1572 1498 265 233 221 0 chr6 50402922 50403008 -132012234 - MIR3 SINE MIR -8 200 96 517 283 90 31 chr6 50403246 50403469 -132011773 - MIR SINE MIR 0 262 27 2604 120 91 0 chr6 50403785 50404193 -132011049 - LTR47A LTR ERVL -7 445 1 318 324 101 7 chr6 50404433 50404572 -132010670 + L1ME4a LINE L1 5621 5772 -349 376 271 119 53 chr6 50404632 50404876 -132010366 + L1ME4a LINE L1 5862 6121 0 599 311 153 4 chr6 50404904 50405132 -132010110 - MIR SINE MIR 0 262 1 570 232 201 71 chr6 50405629 50406008 -132009234 + MLT1H LTR MaLR 118 545 -4 288 246 0 16 chr6 50406047 50406108 -132009134 - L2 LINE L2 -10 3303 3244 287 317 77 0 chr6 50406617 50406721 -132008521 - MIR3 SINE MIR -14 194 83 215 300 58 50 chr6 50407339 50407459 -132007783 - MIR3 SINE MIR 0 208 88 3078 165 40 35 chr6 50408117 50408740 -132006502 + L1MB5 LINE L1 5538 6163 -11 2171 114 0 16 chr6 50408747 50409064 -132006178 - AluSx SINE Alu 0 312 1 456 302 198 35 chr6 50412038 50412376 -132002866 - L2 LINE L2 -2 3311 2919 489 237 79 53 chr6 50412445 50412635 -132002607 + MIR SINE MIR 35 229 -33 287 257 92 9 chr6 50412990 50413099 -132002143 + MIR SINE MIR 31 148 -114 2052 65 0 0 chr6 50413191 50413452 -132001790 + AluY SINE Alu 40 300 -11 1876 150 113 20 chr6 50415130 50415537 -131999705 - LTR56 LTR ERV1 0 445 1 9918 141 45 40 chr6 50415638 50417030 -131998212 - LTR56-int LTR ERV1 -219 5699 4315 6467 57 21 0 chr6 50417030 50417518 -131997724 - L1PA7 LINE L1 -6 6148 5672 2165 94 0 16 chr6 50417518 50417826 -131997416 - AluY SINE Alu -8 303 1 6467 57 21 0 chr6 50417826 50418378 -131996864 - L1PA7 LINE L1 -482 5672 5107 216 0 0 0 chr6 50418386 50418410 -131996832 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9918 141 45 40 chr6 50418410 50419160 -131996082 - LTR56-int LTR ERV1 -1609 4309 3779 42540 60 3 0 chr6 50419176 50425299 -131989943 + L1PA4 LINE L1 12 6155 0 7224 54 3 2 chr6 50425267 50426160 -131989082 + L1PA5 LINE L1 5261 6154 0 * 43360 37 21 1 chr6 50426193 50432215 -131983027 - L1PA3 LINE L1 0 6155 13 7564 184 60 66 chr6 50432216 50434327 -131980915 - LTR56-int LTR ERV1 -1648 3633 1880 1541 115 104 24 chr6 50434310 50434518 -131980724 - LTR56-int LTR ERV1 -4649 1682 1443 * 23330 58 5 3 chr6 50434518 50438293 -131976949 - L1PA6 LINE L1 -3 6151 2362 1541 115 104 24 chr6 50438293 50438371 -131976871 - LTR56-int LTR ERV1 -4888 1443 1373 1017 185 92 40 chr6 50438496 50438745 -131976497 - LTR56-int LTR ERV1 -4949 1382 1121 2274 96 3 3 chr6 50439285 50439578 -131975664 - AluSc SINE Alu -16 293 1 2151 155 65 7 chr6 50440455 50440608 -131974634 - LTR56 LTR ERV1 0 445 302 4498 133 19 19 chr6 50440608 50441342 -131973900 - MER50 LTR ERV1 0 734 1 2151 155 65 7 chr6 50441342 50441601 -131973641 - LTR56 LTR ERV1 -143 302 9 1246 85 0 6 chr6 50441690 50441867 -131973375 - L1PA7 LINE L1 -1434 4712 4537 6838 64 15 0 chr6 50441867 50443258 -131971984 + L1PA7 LINE L1 4702 6109 -45 21 0 0 0 chr6 50443266 50443287 -131971955 + AT_rich Low_complexity Low_complexity 1 21 0 289 237 35 75 chr6 50444365 50444542 -131970700 + LTR8 LTR ERV1 1 149 -392 848 220 77 39 chr6 50444711 50444997 -131970245 + LTR8A LTR ERV1 288 584 -143 189 0 0 0 chr6 50444999 50445020 -131970222 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 7600 97 7 20 chr6 50445045 50445958 -131969284 - L1MA1 LINE L1 -14 6288 5390 1781 129 54 90 chr6 50445958 50446345 -131968897 + THE1C LTR MaLR 1 373 -2 7600 97 7 20 chr6 50446345 50446713 -131968529 - L1MA1 LINE L1 -912 5390 5019 436 240 6 117 chr6 50446713 50446884 -131968358 + LTR8A LTR ERV1 576 727 0 721 276 81 18 chr6 50446922 50447143 -131968099 + MLT1I LTR MaLR 14 248 -161 790 274 117 18 chr6 50447585 50447859 -131967383 + MLT1I LTR MaLR 108 408 -1 253 311 159 15 chr6 50447875 50448007 -131967235 - L2 LINE L2 0 3272 3122 1035 129 0 0 chr6 50448160 50448338 -131966904 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 211 407 74 0 chr6 50449074 50449236 -131966006 + MIR3 SINE MIR 30 203 -5 1992 237 52 9 chr6 50449399 50449863 -131965379 - LTR40a LTR ERVL -2 517 34 298 299 49 0 chr6 50449905 50450049 -131965193 - L1MC4a LINE L1 -1795 6013 5863 439 228 138 16 chr6 50450054 50450177 -131965065 - L1MC4a LINE L1 -1988 5820 5683 330 264 9 57 chr6 50450184 50450290 -131964952 - L1MC4a LINE L1 -2173 5635 5535 900 194 52 26 chr6 50450330 50450562 -131964680 - LTR50 LTR ERVL -557 238 1 722 180 63 26 chr6 50450569 50450758 -131964484 - L1MC4a LINE L1 -2317 5491 5296 384 291 105 0 chr6 50451516 50451688 -131963554 - MIR SINE MIR 0 262 73 231 279 16 23 chr6 50452336 50452465 -131962777 - L1ME4a LINE L1 -6 6115 5988 241 320 116 7 chr6 50452486 50452633 -131962609 - MIR SINE MIR -14 248 86 546 311 98 23 chr6 50452807 50453154 -131962088 - L1ME4a LINE L1 -341 5780 5408 364 279 0 0 chr6 50454312 50454423 -131960819 + MIR SINE MIR 61 171 -91 1025 236 53 20 chr6 50454434 50454735 -131960507 + L2 LINE L2 2405 2715 -599 1184 208 197 7 chr6 50454736 50455030 -131960212 + MLT1F LTR MaLR 179 528 -14 428 304 7 0 chr6 50455043 50455181 -131960061 + MLT1F-int LTR MaLR 3 141 -1230 548 314 37 0 chr6 50455190 50455432 -131959810 + MLT1F-int LTR MaLR 285 535 -836 481 276 33 22 chr6 50455689 50455870 -131959372 + MLT1F-int LTR MaLR 702 884 -487 734 227 44 110 chr6 50456054 50456437 -131958805 + MLT1F-int LTR MaLR 1014 1371 0 977 210 143 13 chr6 50456517 50456755 -131958487 + LTR16A1 LTR ERVL 189 457 0 230 268 72 43 chr6 50457196 50457334 -131957908 - L1ME3A LINE L1 -230 5940 5799 1639 264 128 76 chr6 50457346 50458143 -131957099 - L1MC4a LINE L1 -987 5159 4405 263 80 0 100 chr6 50458143 50458193 -131957049 + MADE1 DNA Mariner 1 45 -35 1639 264 128 76 chr6 50458193 50459446 -131955796 - L1MC4a LINE L1 -1741 4405 2951 411 209 213 66 chr6 50462077 50462436 -131952806 + L1ME2 LINE L1 5540 5871 -299 1532 137 58 8 chr6 50462675 50462916 -131952326 + AluJo SINE Alu 35 287 -25 552 214 46 0 chr6 50462989 50463120 -131952122 + MIR3 SINE MIR 41 177 -31 319 220 67 0 chr6 50463379 50463467 -131951775 + MIR SINE MIR 30 122 -92 1273 291 141 17 chr6 50463757 50464335 -131950907 - L2 LINE L2 0 3313 2808 2205 59 56 3 chr6 50464335 50464623 -131950619 - AluY SINE Alu -8 303 1 1273 291 141 17 chr6 50464623 50465036 -131950206 - L2 LINE L2 -505 2808 1882 363 216 81 34 chr6 50466907 50467055 -131948187 - L1MC5 LINE L1 -48 7913 7759 559 206 314 6 chr6 50467058 50467233 -131948009 - MLT1D LTR MaLR -1 504 276 930 200 32 1 chr6 50467266 50467448 -131947794 - MLT1D LTR MaLR -337 168 1 1766 204 70 142 chr6 50467448 50468686 -131946556 - L1MC5 LINE L1 -200 7761 6614 253 259 99 68 chr6 50468752 50468914 -131946328 - L1MC4a LINE L1 -1436 6372 6206 392 318 23 12 chr6 50468958 50469131 -131946111 + L2 LINE L2 3114 3288 -25 239 247 31 31 chr6 50469179 50469276 -131945966 - MIR SINE MIR -96 166 70 294 295 33 33 chr6 50469553 50469751 -131945491 + MIR SINE MIR 17 212 -50 423 283 22 14 chr6 50470138 50470276 -131944966 - MIR SINE MIR -89 173 35 2235 78 0 0 chr6 50470602 50470871 -131944371 + AluSx SINE Alu 44 312 0 329 208 189 0 chr6 50471372 50471478 -131943764 + MIR SINE MIR 81 206 -56 315 230 87 11 chr6 50473661 50473764 -131941478 + MIR SINE MIR 44 154 -54 1736 136 9 76 chr6 50473850 50474167 -131941075 - AluJo SINE Alu -16 296 1 1642 189 126 73 chr6 50474190 50474708 -131940534 + MLT1H LTR MaLR 3 547 -2 436 339 0 23 chr6 50476460 50476590 -131938652 - MER91A DNA MER1_type -53 143 17 342 198 49 0 chr6 50479228 50479309 -131935933 - L1MC4a LINE L1 -563 7245 7161 1679 163 80 18 chr6 50479320 50479706 -131935536 - L1MC4 LINE L1 -872 7170 6761 304 308 39 58 chr6 50481487 50481643 -131933599 - MIR3 SINE MIR -9 199 47 411 237 8 17 chr6 50481820 50481938 -131933304 + MLT1H1 LTR MaLR 439 555 0 751 233 6 0 chr6 50481948 50482124 -131933118 + ERVL LTR ERVL 5242 5418 -346 2084 134 89 7 chr6 50482336 50482349 -131932893 - L1MC3 LINE L1 -6 7779 7768 2318 84 0 10 chr6 50482349 50482645 -131932597 + AluSc SINE Alu 1 293 -16 2084 134 89 7 chr6 50482645 50483048 -131932194 - L1MC3 LINE L1 -17 7768 7329 438 198 28 9 chr6 50483072 50483178 -131932064 + Ricksha DNA DNA 238 345 -2901 1312 272 162 15 chr6 50483200 50483730 -131931512 + MLT2E LTR ERVL 19 626 -2 1686 208 156 31 chr6 50483805 50484344 -131930898 - MLT1E2 LTR MaLR 0 626 21 1837 147 10 24 chr6 50484920 50485213 -131930029 - AluJo SINE Alu -23 289 1 459 304 76 34 chr6 50485393 50485630 -131929612 + L1ME1 LINE L1 840 1086 -4984 334 262 52 14 chr6 50485635 50485845 -131929397 + L1ME1 LINE L1 1149 1366 -4895 2411 108 8 3 chr6 50486006 50486367 -131928875 + LTR57 LTR ERVL 7 369 -42 2162 143 0 0 chr6 50486392 50486700 -131928542 - AluSx SINE Alu -4 308 1 198 103 0 0 chr6 50486800 50486829 -131928413 + (TG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr6 50486937 50486959 -131928283 + AT_rich Low_complexity Low_complexity 1 22 0 5832 221 128 58 chr6 50487055 50487537 -131927705 + L1ME1 LINE L1 2044 2491 -3609 523 99 0 25 chr6 50487537 50487618 -131927624 + MADE1 DNA Mariner 1 79 -1 5832 221 128 58 chr6 50487618 50488496 -131926746 + L1ME1 LINE L1 2491 3307 -2793 1711 160 7 31 chr6 50488496 50488784 -131926458 + AluJo SINE Alu 2 282 -30 5832 221 128 58 chr6 50488784 50491196 -131924046 + L1ME1 LINE L1 3307 6083 -17 1598 169 68 11 chr6 50491241 50491519 -131923723 + AluJo SINE Alu 9 302 -10 1969 148 14 0 chr6 50491664 50491955 -131923287 + AluJb SINE Alu 1 295 -17 824 290 18 25 chr6 50492293 50492579 -131922663 - L2 LINE L2 -2 3311 3028 1806 159 0 3 chr6 50492585 50492875 -131922367 - AluJo SINE Alu -23 289 1 2047 119 56 0 chr6 50494559 50494844 -131920398 + AluSx SINE Alu 1 301 -11 521 272 67 70 chr6 50495283 50495402 -131919840 + REP3 LTR ERV 190 308 -254 2503 71 0 3 chr6 50495402 50495713 -131919529 + AluSq SINE Alu 1 310 -3 521 272 67 70 chr6 50495713 50495920 -131919322 + REP3 LTR ERV 308 515 -47 730 176 8 0 chr6 50496101 50496226 -131919016 + FLAM_A SINE Alu 1 126 -7 762 140 0 0 chr6 50496347 50496454 -131918788 + FLAM_C SINE Alu 3 109 -34 490 324 87 0 chr6 50497170 50497389 -131917853 + MIR SINE MIR 4 241 -21 22 56 0 0 chr6 50498395 50498431 -131916811 + AT_rich Low_complexity Low_complexity 1 36 0 589 279 29 12 chr6 50499129 50499301 -131915941 + MIR3 SINE MIR 25 199 -9 289 308 56 28 chr6 50505031 50505138 -131910104 - L2 LINE L2 -9 3263 3154 355 280 63 10 chr6 50505750 50505875 -131909367 - MER5B DNA MER1_type -22 167 34 408 290 40 16 chr6 50506275 50506399 -131908843 - MIR3 SINE MIR 0 208 82 379 313 17 0 chr6 50508943 50509058 -131906184 + L2 LINE L2 3197 3313 0 252 114 0 0 chr6 50509861 50509896 -131905346 - U2 snRNA snRNA -153 35 1 1326 173 52 28 chr6 50511002 50511251 -131903991 - AluJb SINE Alu -18 294 40 32 26 0 0 chr6 50511286 50511325 -131903917 + AT_rich Low_complexity Low_complexity 1 39 0 2549 37 3 0 chr6 50511385 50511682 -131903560 - AluY SINE Alu -13 298 1 1047 94 123 0 chr6 50512716 50512886 -131902356 + MSTB LTR MaLR 234 424 -2 206 274 164 14 chr6 50512936 50513009 -131902233 + L2 LINE L2 3226 3309 -4 302 182 0 0 chr6 50513091 50513146 -131902096 + MSTB2 LTR MaLR 29 83 -374 503 294 201 20 chr6 50513492 50513785 -131901457 - L2 LINE L2 0 3313 2968 30 69 0 0 chr6 50514063 50514121 -131901121 + AT_rich Low_complexity Low_complexity 1 58 0 2928 232 96 15 chr6 50514941 50515589 -131899653 + L1ME1 LINE L1 3995 4768 -1378 447 68 0 0 chr6 50515589 50515648 -131899594 + (CA)n Simple_repeat Simple_repeat 2 60 0 2928 232 96 15 chr6 50515648 50516081 -131899161 + L1ME1 LINE L1 4768 5164 -982 1877 211 35 35 chr6 50516078 50516600 -131898642 + L1ME1 LINE L1 5645 6166 0 * 306 241 108 12 chr6 50516852 50516935 -131898307 - L2 LINE L2 -1 3271 3181 4385 105 91 8 chr6 50517139 50517864 -131897378 + LTR1 LTR ERV1 1 785 0 2144 124 7 0 chr6 50518313 50518612 -131896630 - AluSx SINE Alu -11 301 1 2446 88 0 0 chr6 50519172 50519469 -131895773 - AluSx SINE Alu -15 297 1 2264 116 3 16 chr6 50519640 50519951 -131895291 - AluSx SINE Alu -5 307 1 449 154 301 44 chr6 50520010 50520146 -131895096 + MER5B DNA MER1_type 7 177 -1 385 339 48 7 chr6 50520374 50520567 -131894675 - MIR SINE MIR -50 212 16 217 255 0 0 chr6 50520772 50520819 -131894423 + L2 LINE L2 3263 3309 -4 2815 0 0 3 chr6 50520905 50521211 -131894031 - AluYa5 SINE Alu -6 305 1 207 286 18 0 chr6 50522167 50522223 -131893019 - MIR3 SINE MIR -7 201 145 522 0 0 0 chr6 50522430 50522488 -131892754 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 809 222 195 14 chr6 50524777 50524998 -131890244 - MIR SINE MIR 0 262 2 765 177 0 0 chr6 50525079 50525203 -131890039 + AluJo SINE Alu 11 134 -178 382 215 105 52 chr6 50525223 50525395 -131889847 - LTR48 LTR ERV1 0 787 607 256 256 11 11 chr6 50525423 50525513 -131889729 - LTR48 LTR ERV1 -302 485 396 289 269 20 3 chr6 50525587 50525703 -131889539 - MER34B LTR ERV1 -428 114 26 352 279 48 0 chr6 50525985 50526089 -131889153 + L2 LINE L2 2592 2700 -614 242 252 10 87 chr6 50526525 50526628 -131888614 + L3 LINE CR1 1233 1327 -250 573 360 54 30 chr6 50529587 50529956 -131885286 + L2 LINE L2 2895 3272 0 559 210 112 56 chr6 50529988 50530131 -131885111 - MIR SINE MIR -2 260 110 354 215 0 0 chr6 50530261 50530326 -131884916 + MER116 DNA Mariner 2 66 -14 610 216 131 7 chr6 50532094 50532247 -131882995 - MIR3 SINE MIR -6 202 31 187 219 24 24 chr6 50532661 50532702 -131882540 + MIR SINE MIR 17 57 -151 1764 167 43 0 chr6 50532756 50533055 -131882187 - AluJo SINE Alu 0 312 1 2228 130 0 9 chr6 50533064 50533379 -131881863 - AluSx SINE Alu 0 312 1 304 296 77 53 chr6 50533856 50534025 -131881217 + L2 LINE L2 2911 3083 -189 2221 100 3 28 chr6 50534084 50534404 -131880838 + AluSq SINE Alu 1 312 -1 1062 307 18 58 chr6 50534874 50535376 -131879866 - L2 LINE L2 -28 3285 2804 2094 122 37 37 chr6 50535381 50535735 -131879507 - THE1B LTR MaLR -10 354 1 9156 87 166 7 chr6 50535735 50537098 -131878144 - THE1B-int LTR MaLR 0 1580 1 2095 152 41 36 chr6 50537098 50537460 -131877782 - THE1B LTR MaLR 0 364 1 181 179 0 0 chr6 50537519 50537547 -131877695 - L2 LINE L2 -1527 1787 1760 21 0 0 0 chr6 50537799 50537820 -131877422 + AT_rich Low_complexity Low_complexity 1 21 0 560 272 9 0 chr6 50538029 50538143 -131877099 + FLAM_A SINE Alu 2 116 -17 1706 130 45 0 chr6 50538844 50539091 -131876151 - AluSx SINE Alu -15 297 40 2135 140 0 6 chr6 50542004 50542318 -131872924 + AluJb SINE Alu 1 312 0 44031 31 21 1 chr6 50542324 50548355 -131866887 + L1PA2 LINE L1 1 6154 -1 470 168 129 10 chr6 50548364 50548558 -131866684 + L1 LINE L1 2860 3099 -3047 371 291 52 33 chr6 50548773 50548874 -131866368 - L1ME4a LINE L1 -227 5894 5796 2234 115 0 7 chr6 50548874 50549178 -131866064 + AluSx SINE Alu 1 302 -10 371 291 52 33 chr6 50549178 50549286 -131865956 - L1ME4a LINE L1 -325 5796 5681 392 210 10 23 chr6 50550222 50550332 -131864910 + L1MB4 LINE L1 5476 5581 -540 * 32175 105 25 60 chr6 50550311 50556317 -131858925 + L1PA7 LINE L1 1 5781 -373 44836 38 2 1 chr6 50556320 50562463 -131852779 + L1PA3 LINE L1 6 6153 -2 2907 55 61 0 chr6 50562471 50562833 -131852409 + L1PA7 LINE L1 5769 6152 -2 3474 153 46 7 chr6 50562870 50563477 -131851765 + L1MB4 LINE L1 5550 6180 0 1714 184 35 67 chr6 50563829 50564232 -131851010 + MLT1B LTR MaLR 1 390 0 667 273 37 27 chr6 50564325 50564512 -131850730 - MIR3 SINE MIR -8 200 12 8203 18 1 0 chr6 50564922 50566398 -131848844 - L1PA3 LINE L1 0 6155 4671 28 0 0 0 chr6 50566432 50566460 -131848782 + AT_rich Low_complexity Low_complexity 1 28 0 40 21 0 0 chr6 50566527 50566574 -131848668 + AT_rich Low_complexity Low_complexity 1 47 0 730 203 39 0 chr6 50566951 50567079 -131848163 - FLAM_A SINE Alu 0 133 1 324 265 10 20 chr6 50567082 50567180 -131848062 + MARNA DNA Mariner 364 460 -126 256 356 48 0 chr6 50567892 50567996 -131847246 + MIR SINE MIR 34 142 -66 620 269 29 0 chr6 50568003 50568174 -131847068 - MIR SINE MIR -1 261 86 184 222 0 22 chr6 50568623 50568668 -131846574 - MIR SINE MIR -39 223 180 324 311 19 19 chr6 50569358 50569461 -131845781 - L2 LINE L2 -21 3251 3149 1269 259 222 5 chr6 50569879 50570316 -131844926 + MLT1F LTR MaLR 2 533 -9 2140 110 7 3 chr6 50571099 50571407 -131843835 + AluSg SINE Alu 1 309 -1 43602 48 3 2 chr6 50571736 50577868 -131837374 + L1PA4 LINE L1 7 6144 -11 2282 90 3 3 chr6 50578174 50578473 -131836769 + AluSg SINE Alu 1 299 -11 2069 136 0 3 chr6 50579087 50579382 -131835860 + AluSx SINE Alu 1 294 -18 2459 90 0 0 chr6 50579833 50580144 -131835098 - AluY SINE Alu 0 311 1 402 21 0 0 chr6 50580818 50580865 -131834377 + (TG)n Simple_repeat Simple_repeat 1 47 0 252 245 137 0 chr6 50580919 50581021 -131834221 - L1M4 LINE L1 -1305 4841 4726 185 228 149 70 chr6 50581283 50581397 -131833845 - MIR SINE MIR -26 236 114 380 318 7 20 chr6 50581547 50581700 -131833542 + L1ME LINE L1 5453 5603 -518 1931 185 172 61 chr6 50582253 50582404 -131832838 - Zaphod DNA AcHobo -855 3176 3043 2199 124 0 3 chr6 50582404 50582711 -131832531 + AluSx SINE Alu 1 306 -6 1931 185 172 61 chr6 50582711 50583251 -131831991 - Zaphod DNA AcHobo -988 3043 2408 * 2230 205 58 55 chr6 50583247 50583777 -131831465 - Zaphod DNA AcHobo -3246 785 251 2113 158 56 0 chr6 50583777 50584170 -131831072 - L1MB4 LINE L1 -9 6171 5757 2230 205 58 55 chr6 50584170 50584245 -131830997 - Zaphod DNA AcHobo -3780 251 178 227 254 34 0 chr6 50584248 50584307 -131830935 - Zaphod DNA AcHobo -3970 61 1 186 222 37 19 chr6 50586037 50586091 -131829151 - L2 LINE L2 -8 3264 3210 232 420 51 0 chr6 50586967 50587105 -131828137 + L3b LINE CR1 1394 1538 -45 3216 94 82 42 chr6 50587122 50587672 -131827570 + MER4B LTR ERV1 3 574 -36 1555 183 63 11 chr6 50588542 50588658 -131826584 + AluJb SINE Alu 1 109 -203 284 0 28 0 chr6 50588658 50588694 -131826548 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1555 183 63 11 chr6 50588694 50588861 -131826381 + AluJb SINE Alu 109 299 -13 185 178 22 0 chr6 50589034 50589079 -131826163 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 305 274 27 68 chr6 50591472 50591558 -131823684 + L2 LINE L2 2600 2679 -635 2260 113 0 0 chr6 50591558 50591868 -131823374 - AluY SINE Alu -1 310 1 305 274 27 68 chr6 50591868 50591927 -131823315 + L2 LINE L2 2679 2739 -575 1621 176 40 20 chr6 50591982 50592283 -131822959 + AluJo SINE Alu 3 309 -3 22 56 0 0 chr6 50594374 50594410 -131820832 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 50596334 50596362 -131818880 + AT_rich Low_complexity Low_complexity 1 28 0 236 352 11 0 chr6 50596889 50596980 -131818262 + MIR SINE MIR 33 124 -84 21 0 0 0 chr6 50597926 50597947 -131817295 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 50598157 50598188 -131817054 + AT_rich Low_complexity Low_complexity 1 31 0 242 173 158 1 chr6 50598230 50598357 -131816885 + L1M2 LINE L1 5316 5459 -713 330 280 187 0 chr6 50598358 50598508 -131816734 + MIR SINE MIR 84 261 -1 659 286 115 17 chr6 50598532 50598881 -131816361 + L1ME4a LINE L1 5461 5843 -278 366 216 199 6 chr6 50598909 50599085 -131816157 + L1ME4a LINE L1 5908 6117 -4 591 299 18 6 chr6 50599717 50599884 -131815358 - MIR SINE MIR -89 173 5 2481 33 40 0 chr6 50600304 50600603 -131814639 + AluY SINE Alu 1 311 0 1997 104 19 57 chr6 50601658 50601787 -131813455 + AluSq SINE Alu 3 135 -178 2459 69 0 10 chr6 50601787 50602092 -131813150 + AluY SINE Alu 1 302 -9 1997 104 19 57 chr6 50602092 50602278 -131812964 + AluSq SINE Alu 135 306 -7 28 48 0 0 chr6 50604780 50604822 -131810420 + AT_rich Low_complexity Low_complexity 1 42 0 623 253 74 0 chr6 50605172 50605334 -131809908 + MIR SINE MIR 64 237 -25 1210 186 21 38 chr6 50605360 50605597 -131809645 - AluJo SINE Alu -38 274 42 736 258 131 41 chr6 50605845 50606159 -131809083 + L1MC4a LINE L1 5524 5865 -1943 1779 220 8 6 chr6 50606196 50606560 -131808682 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr6 50606657 50606680 -131808562 + AT_rich Low_complexity Low_complexity 1 23 0 13393 190 22 51 chr6 50608036 50608366 -131806876 - L1PB4 LINE L1 0 6156 5818 1801 179 3 0 chr6 50608366 50608657 -131806585 - AluSx SINE Alu -20 292 1 13393 190 22 51 chr6 50608657 50608900 -131806342 - L1PB4 LINE L1 -338 5818 5569 2289 92 0 7 chr6 50608900 50609195 -131806047 + AluSx SINE Alu 1 293 -19 13393 190 22 51 chr6 50609195 50609591 -131805651 - L1PB4 LINE L1 -587 5569 5163 1009 96 0 0 chr6 50609591 50609726 -131805516 - AluSg/x SINE Alu -3 307 173 13393 190 22 51 chr6 50609726 50613228 -131802014 - L1PB4 LINE L1 -993 5163 1747 592 282 74 40 chr6 50613965 50614288 -131800954 + L1ME LINE L1 67 400 -5670 558 206 39 0 chr6 50614306 50614408 -131800834 - FLAM_A SINE Alu -26 116 11 1162 268 76 99 chr6 50614414 50615680 -131799562 + L1ME LINE L1 389 1683 -4397 265 167 0 50 chr6 50615680 50615740 -131799502 + U2 snRNA snRNA 2 58 -130 1162 268 76 99 chr6 50615740 50616174 -131799068 + L1ME LINE L1 1683 2126 -3954 1972 150 10 10 chr6 50616174 50616481 -131798761 + AluJo SINE Alu 5 311 -1 1162 268 76 99 chr6 50616481 50616586 -131798656 + L1ME LINE L1 2126 2232 -3848 14307 137 23 12 chr6 50616586 50618978 -131796264 + Tigger1 DNA MER2_type 1 2418 0 1162 268 76 99 chr6 50618978 50619134 -131796108 + L1ME LINE L1 2232 2349 -3731 567 227 38 92 chr6 50619128 50619366 -131795876 + L1ME LINE L1 4435 4659 -1421 * 619 256 57 8 chr6 50619422 50619668 -131795574 + L1ME LINE L1 4808 5065 -1015 1687 60 0 0 chr6 50619671 50619887 -131795355 - L1PA5 LINE L1 -1174 4972 4757 7170 49 1 1 chr6 50619887 50621090 -131794152 + L1PA5 LINE L1 4948 6150 -4 1939 221 66 23 chr6 50621131 50621764 -131793478 + L1ME LINE L1 5048 5723 -350 424 308 45 63 chr6 50621767 50621988 -131793254 - L3 LINE CR1 -283 1294 1078 234 393 0 9 chr6 50621992 50622099 -131793143 - L3 LINE CR1 -606 971 866 923 156 14 0 chr6 50622158 50622299 -131792943 + FAM SINE Alu 1 143 -42 238 208 0 0 chr6 50622487 50622540 -131792702 + T-rich Low_complexity Low_complexity 1 53 0 469 31 0 0 chr6 50622541 50622605 -131792637 - L1PA2 LINE L1 0 6155 6092 234 317 0 0 chr6 50624019 50624079 -131791163 + Charlie4 DNA MER1_type 1892 1951 -10 247 246 15 0 chr6 50624283 50624348 -131790894 - MER116 DNA Mariner 0 80 15 265 106 0 43 chr6 50624821 50624868 -131790374 + L2 LINE L2 3262 3306 -7 447 219 0 130 chr6 50625339 50625412 -131789830 - MER5A DNA MER1_type -56 133 52 180 0 0 0 chr6 50625412 50625432 -131789810 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 2136 102 0 20 chr6 50625434 50625728 -131789514 - AluSq SINE Alu -25 288 1 447 219 0 130 chr6 50625728 50625797 -131789445 - MER5A DNA MER1_type -138 51 7 1074 164 20 0 chr6 50626778 50626973 -131788269 + L1PBa LINE L1 2 200 -6663 1975 106 12 38 chr6 50626975 50627315 -131787927 + L1PBa LINE L1 636 966 -5897 1643 102 4 34 chr6 50627316 50627529 -131787713 + L1PB1 LINE L1 5892 6097 -54 2371 58 7 7 chr6 50627529 50627822 -131787420 + AluY SINE Alu 1 293 -18 1643 102 4 34 chr6 50627822 50627872 -131787370 + L1PB1 LINE L1 6097 6147 -4 2192 77 40 3 chr6 50627893 50628191 -131787051 + AluSc SINE Alu 1 309 0 419 295 23 8 chr6 50629338 50629467 -131785775 + L2 LINE L2 3142 3272 0 340 280 134 0 chr6 50630314 50630471 -131784771 + HAL1 LINE L1 1462 1639 -868 2073 102 34 3 chr6 50630563 50630730 -131784512 - AluSx SINE Alu -9 303 122 216 0 0 0 chr6 50630730 50630754 -131784488 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2073 102 34 3 chr6 50630754 50630880 -131784362 - AluSx SINE Alu -190 122 1 38 51 0 0 chr6 50631219 50631278 -131783964 + AT_rich Low_complexity Low_complexity 1 59 0 1653 112 47 8 chr6 50631859 50632023 -131783219 + AluSx SINE Alu 45 225 -120 216 0 0 0 chr6 50632023 50632047 -131783195 + (GGA)n Simple_repeat Simple_repeat 3 26 0 1653 112 47 8 chr6 50632047 50632173 -131783069 + AluSx SINE Alu 225 345 0 31 0 0 0 chr6 50632272 50632303 -131782939 + AT_rich Low_complexity Low_complexity 1 31 0 281 239 0 15 chr6 50634566 50634633 -131780609 + CT-rich Low_complexity Low_complexity 1 66 0 448 216 14 0 chr6 50634721 50634869 -131780373 + (TA)n Simple_repeat Simple_repeat 1 150 0 1977 107 33 0 chr6 50634907 50635210 -131780032 + AluSx SINE Alu 1 312 0 2153 106 3 0 chr6 50635408 50635701 -131779541 + AluY SINE Alu 1 294 -17 317 316 0 0 chr6 50635824 50635903 -131779339 + L2 LINE L2 3235 3313 0 374 293 191 14 chr6 50636515 50636662 -131778580 - MIR3 SINE MIR -5 203 31 28 48 0 0 chr6 50638005 50638047 -131777195 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr6 50638080 50638106 -131777136 + AT_rich Low_complexity Low_complexity 1 26 0 264 298 29 94 chr6 50638106 50638277 -131776965 - MIR SINE MIR -56 206 47 1843 158 0 10 chr6 50639479 50639783 -131775459 - AluJb SINE Alu -11 301 1 200 308 108 0 chr6 50640083 50640148 -131775094 - MIR3 SINE MIR -41 167 96 313 301 21 43 chr6 50640891 50641077 -131774165 + L1ME4a LINE L1 5864 6045 -76 22 35 0 0 chr6 50641924 50641953 -131773289 + AT_rich Low_complexity Low_complexity 1 29 0 386 208 17 83 chr6 50642881 50643001 -131772241 + L2 LINE L2 2505 2616 -698 2616 98 3 13 chr6 50643002 50643379 -131771863 - THE1C LTR MaLR -2 373 1 7309 117 33 26 chr6 50643380 50643468 -131771774 - THE1C-int LTR MaLR 0 1580 1494 2368 68 0 7 chr6 50643468 50643764 -131771478 - AluY SINE Alu -17 294 1 7309 117 33 26 chr6 50643764 50644817 -131770425 - THE1C-int LTR MaLR -86 1494 431 20401 49 1 2 chr6 50644942 50647578 -131767664 - L1P LINE L1 -1464 4682 2049 5291 37 8 4 chr6 50647732 50648805 -131766437 - L1P2 LINE L1 -375 5780 4702 1229 85 0 6 chr6 50648805 50648982 -131766260 + L1P2 LINE L1 4537 4712 -1434 1423 131 62 11 chr6 50649071 50649330 -131765912 + LTR56 LTR ERV1 9 280 -165 2522 146 17 28 chr6 50649330 50649795 -131765447 + MER50 LTR ERV1 1 460 -274 1945 180 8 40 chr6 50649897 50650429 -131764813 - THE1C-int LTR MaLR -1150 430 1 2622 90 50 0 chr6 50650429 50650786 -131764456 - THE1C LTR MaLR 0 375 1 236 337 71 10 chr6 50650819 50650917 -131764325 - MIR SINE MIR -139 123 20 333 215 0 0 chr6 50650986 50651079 -131764163 + (TA)n Simple_repeat Simple_repeat 1 93 0 232 297 40 0 chr6 50651383 50651457 -131763785 + L2 LINE L2 2669 2745 -569 1839 99 0 0 chr6 50651704 50651971 -131763271 + AluSx SINE Alu 39 305 0 2759 106 10 0 chr6 50652104 50652511 -131762731 + L1PB1 LINE L1 5739 6149 -2 2181 111 0 3 chr6 50653142 50653440 -131761802 - AluSx SINE Alu -15 297 1 21 71 0 0 chr6 50653480 50653522 -131761720 + AT_rich Low_complexity Low_complexity 1 42 0 220 233 43 129 chr6 50654088 50654204 -131761038 - MIR SINE MIR -40 222 117 516 102 0 82 chr6 50654221 50654319 -131760923 - L1MD3 LINE L1 0 7995 7906 385 197 66 0 chr6 50654321 50654397 -131760845 + 5S rRNA rRNA 9 89 -32 361 317 121 42 chr6 50654992 50655232 -131760010 - MIR SINE MIR 0 262 4 435 266 54 69 chr6 50656753 50656956 -131758286 - MLT1J LTR MaLR -2 509 310 705 180 27 47 chr6 50657047 50657197 -131758045 - MER6 DNA MER2_type 0 865 -2 433 218 56 101 chr6 50657242 50657421 -131757821 - MLT1J LTR MaLR -336 175 5 385 289 3 41 chr6 50658362 50658506 -131756736 + MIR SINE MIR 7 142 -66 931 222 154 23 chr6 50658576 50658875 -131756367 + AluJo SINE Alu 1 302 0 216 0 0 0 chr6 50658960 50658984 -131756258 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2067 92 28 0 chr6 50659010 50659292 -131755950 - AluY SINE Alu -21 290 1 1390 208 52 10 chr6 50661834 50661954 -131753288 + AluJo SINE Alu 1 115 -197 428 14 28 28 chr6 50661954 50662025 -131753217 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 1390 208 52 10 chr6 50662025 50662193 -131753049 + AluJo SINE Alu 115 301 -11 626 228 42 47 chr6 50663022 50663215 -131752027 + MIR SINE MIR 59 250 -12 409 262 64 7 chr6 50663280 50663421 -131751821 + Charlie7 DNA MER1_type 1437 1585 -1027 601 275 75 10 chr6 50663483 50663683 -131751559 - L2 LINE L2 0 3313 3101 1573 178 45 68 chr6 50663724 50664106 -131751136 - MLT1A2 LTR MaLR 0 374 2 317 301 0 0 chr6 50664114 50664187 -131751055 - L2 LINE L2 -250 3063 2991 946 237 372 49 chr6 50664249 50664900 -131750342 - L2 LINE L2 -1351 1963 1103 26 30 0 0 chr6 50665202 50665235 -131750007 + AT_rich Low_complexity Low_complexity 1 33 0 262 252 14 43 chr6 50665241 50665380 -131749862 + L1 LINE L1 2890 3024 -3122 591 237 38 32 chr6 50665434 50665620 -131749622 - L1ME LINE L1 -448 5673 5487 3695 155 30 24 chr6 50665980 50667128 -131748114 - L1MA9 LINE L1 -375 5937 4780 551 93 0 0 chr6 50667129 50667204 -131748038 + MSTB LTR MaLR 28 102 -324 428 158 61 0 chr6 50667209 50667291 -131747951 - L1MA9 LINE L1 -1376 4770 4684 741 162 0 0 chr6 50667291 50667408 -131747834 + MSTB LTR MaLR 1 117 -309 43 35 0 0 chr6 50667629 50667686 -131747556 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr6 50667908 50667932 -131747310 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr6 50668287 50668314 -131746928 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 542 153 0 0 chr6 50668316 50668401 -131746841 - AluSg/x SINE Alu -31 281 197 1681 183 4 0 chr6 50669660 50669975 -131745267 + AluJb SINE Alu 2 317 0 261 296 46 46 chr6 50670949 50671057 -131744185 + L2 LINE L2 3205 3312 -1 422 310 140 83 chr6 50671290 50671712 -131743530 + MLT1K LTR MaLR 109 554 -34 21 0 0 0 chr6 50673065 50673086 -131742156 + AT_rich Low_complexity Low_complexity 1 21 0 362 176 93 19 chr6 50673327 50673435 -131741807 - MER103 DNA DNA -40 126 11 284 44 29 0 chr6 50673842 50673890 -131741352 - MADE1 DNA Mariner 0 80 41 355 323 86 42 chr6 50673899 50674236 -131741006 - L1M4 LINE L1 -1444 4702 4351 572 325 94 19 chr6 50674323 50674852 -131740390 - L1M4 LINE L1 -1869 4277 3709 314 64 64 0 chr6 50675235 50675282 -131739960 + MADE1 DNA Mariner 4 53 -27 329 49 0 0 chr6 50675383 50675424 -131739818 + MADE1 DNA Mariner 40 80 0 217 252 17 34 chr6 50675516 50675635 -131739607 + T-rich Low_complexity Low_complexity 2 118 0 231 258 0 0 chr6 50675950 50676012 -131739230 + GA-rich Low_complexity Low_complexity 1 62 0 654 175 79 0 chr6 50676052 50676166 -131739076 - FLAM_A SINE Alu -13 129 7 294 246 7 14 chr6 50676777 50676915 -131738327 + (TA)n Simple_repeat Simple_repeat 1 137 0 33 0 0 0 chr6 50679237 50679270 -131735972 + AT_rich Low_complexity Low_complexity 1 33 0 329 331 75 31 chr6 50680767 50681060 -131734182 + L1 LINE L1 2110 2415 -3731 21 0 0 0 chr6 50681155 50681176 -131734066 + AT_rich Low_complexity Low_complexity 1 21 0 33 66 0 0 chr6 50681301 50681362 -131733880 + AT_rich Low_complexity Low_complexity 1 61 0 566 288 123 30 chr6 50681615 50682236 -131733006 - L1MC4a LINE L1 -537 5805 5138 1783 66 154 0 chr6 50682236 50682495 -131732747 + AluSp SINE Alu 2 300 -3 566 288 123 30 chr6 50682495 50682548 -131732694 - L1MC4a LINE L1 -1204 5138 5091 249 350 0 0 chr6 50683832 50683912 -131731330 - HAL1b LINE L1 -827 521 442 247 273 12 64 chr6 50684079 50684251 -131730991 - L1MC4a LINE L1 -4915 1204 1042 6333 212 42 53 chr6 50684605 50685136 -131730106 - L1MB8 LINE L1 -168 6821 6286 1645 189 3 7 chr6 50685136 50685432 -131729810 - AluJo SINE Alu -17 295 1 6333 212 42 53 chr6 50685432 50685524 -131729718 - L1MB8 LINE L1 -703 6286 6194 1773 145 3 18 chr6 50685524 50685806 -131729436 - AluSx SINE Alu -18 294 17 6333 212 42 53 chr6 50685806 50687261 -131727981 - L1MB8 LINE L1 -795 6194 4780 1403 211 32 67 chr6 50687261 50687635 -131727607 - MLT1A1 LTR MaLR 0 365 5 6333 212 42 53 chr6 50687635 50688188 -131727054 - L1MB8 LINE L1 -2209 4780 4222 5810 242 59 42 chr6 50688625 50690870 -131724372 - L1MB8 LINE L1 -4660 2299 11 248 294 209 32 chr6 50691125 50691312 -131723930 - MIR SINE MIR -33 229 10 5275 166 88 18 chr6 50691908 50692561 -131722681 - Tigger3b DNA MER2_type -1800 1228 623 231 114 0 0 chr6 50692561 50692596 -131722646 + (CA)n Simple_repeat Simple_repeat 1 35 0 5275 166 88 18 chr6 50692596 50693088 -131722154 - Tigger3b DNA MER2_type -2405 623 2 31 0 0 0 chr6 50693095 50693126 -131722116 + AT_rich Low_complexity Low_complexity 1 31 0 19691 29 0 1 chr6 50693126 50696265 -131718977 - L1PA3 LINE L1 -3 6152 3013 23 0 0 0 chr6 50699193 50699216 -131716026 + AT_rich Low_complexity Low_complexity 1 23 0 1032 176 75 0 chr6 50699578 50699765 -131715477 + MER8 DNA MER2_type 39 239 0 5764 81 33 13 chr6 50699853 50700715 -131714527 + L1PA14 LINE L1 5298 6177 0 1435 221 73 64 chr6 50701415 50701876 -131713366 + MLT2B1 LTR ERVL 1 373 -41 2403 70 0 0 chr6 50702379 50702678 -131712564 + AluY SINE Alu 1 299 -12 213 305 61 0 chr6 50703229 50703311 -131711931 - MIR SINE MIR 0 262 176 21 0 0 0 chr6 50703313 50703334 -131711908 + AT_rich Low_complexity Low_complexity 1 21 0 538 243 113 39 chr6 50703338 50703647 -131711595 - HAL1 LINE L1 -37 2470 2139 305 231 15 146 chr6 50703732 50703763 -131711479 - HAL1 LINE L1 -707 1800 1767 1837 163 0 16 chr6 50703763 50704070 -131711172 - AluJb SINE Alu -8 304 3 305 231 15 146 chr6 50704070 50704168 -131711074 - HAL1 LINE L1 -740 1767 1688 559 294 58 41 chr6 50704168 50704460 -131710782 - L1ME LINE L1 -5290 780 484 1424 249 55 21 chr6 50704479 50704956 -131710286 - HAL1 LINE L1 -812 1695 1203 219 259 136 0 chr6 50705392 50705473 -131709769 - MIR SINE MIR -8 254 163 264 100 0 0 chr6 50705674 50705714 -131709528 + (A)n Simple_repeat Simple_repeat 1 40 0 283 191 27 18 chr6 50706082 50706192 -131709050 + (TA)n Simple_repeat Simple_repeat 2 112 0 1827 153 7 14 chr6 50706547 50706842 -131708400 - AluJo SINE Alu -19 293 1 201 319 77 33 chr6 50708360 50708451 -131706791 + MIR3 SINE MIR 108 202 -6 233 250 117 0 chr6 50710138 50710198 -131705044 - L2 LINE L2 -1 3312 3246 475 233 95 86 chr6 50710783 50711195 -131704047 - LTR33 LTR ERVL 0 521 37 190 273 0 111 chr6 50711533 50711632 -131703610 - MIR SINE MIR -76 186 99 256 326 109 23 chr6 50712013 50712188 -131703054 + MIR SINE MIR 67 256 -6 519 217 115 35 chr6 50712596 50712822 -131702420 + HAL1 LINE L1 1155 1398 -1109 568 297 266 11 chr6 50712851 50713205 -131702037 - L2 LINE L2 -52 3261 2818 1700 240 98 60 chr6 50713237 50714057 -131701185 + HAL1 LINE L1 1391 2241 -266 206 103 0 26 chr6 50714064 50714103 -131701139 + (GAAAA)n Simple_repeat Simple_repeat 5 42 0 2003 109 0 56 chr6 50714144 50714446 -131700796 + AluSg SINE Alu 1 285 -25 30 0 0 0 chr6 50714446 50714476 -131700766 + AT_rich Low_complexity Low_complexity 1 30 0 339 22 0 0 chr6 50714549 50714595 -131700647 + AluSp/q SINE Alu 251 296 -7 318 232 81 0 chr6 50714603 50714702 -131700540 + L1ME4a LINE L1 6002 6108 -13 1900 112 10 20 chr6 50716296 50716590 -131698652 + AluSq SINE Alu 21 311 -2 1022 233 18 14 chr6 50716840 50717063 -131698179 - MER58A DNA MER1_type 0 224 1 659 339 58 60 chr6 50717818 50718270 -131696972 - L2 LINE L2 0 3313 2863 193 322 102 8 chr6 50718593 50718711 -131696531 + MIR SINE MIR 105 233 -29 2078 127 0 0 chr6 50718918 50719210 -131696032 + AluSq SINE Alu 1 292 -21 2336 48 10 0 chr6 50719317 50719335 -131695907 + L1P2 LINE L1 5484 5500 -655 377 20 39 0 chr6 50719335 50719386 -131695856 - L1PA4 LINE L1 -2 6153 6101 2336 48 10 0 chr6 50719386 50719662 -131695580 + L1P2 LINE L1 5500 5781 -374 22 0 0 0 chr6 50719719 50719741 -131695501 + AT_rich Low_complexity Low_complexity 1 22 0 408 71 0 0 chr6 50719908 50719964 -131695278 + (CA)n Simple_repeat Simple_repeat 2 57 0 702 177 6 43 chr6 50720092 50720256 -131694986 - L1PA16 LINE L1 -2 6164 6007 181 197 49 66 chr6 50720409 50720470 -131694772 - L2 LINE L2 -81 3232 3173 293 324 72 43 chr6 50721040 50721179 -131694063 + L2 LINE L2 2920 3062 -210 189 372 12 23 chr6 50721427 50721513 -131693729 - MIR SINE MIR -94 114 30 22 0 0 0 chr6 50721660 50721682 -131693560 + AT_rich Low_complexity Low_complexity 1 22 0 185 121 0 61 chr6 50722014 50722047 -131693195 - MER5A DNA MER1_type -158 31 1 1618 106 13 0 chr6 50722221 50722458 -131692784 - L1P LINE L1 -1788 4358 4119 * 3274 234 67 48 chr6 50722455 50723100 -131692142 - L1M4 LINE L1 -754 5392 4761 2083 143 0 0 chr6 50723100 50723408 -131691834 - AluSx SINE Alu -4 308 1 3274 234 67 48 chr6 50723408 50724083 -131691159 - L1M4 LINE L1 -1385 4761 4047 306 288 20 50 chr6 50724081 50724246 -131690996 + L1MC4 LINE L1 6374 6532 -1463 * 482 243 172 12 chr6 50724247 50724416 -131690826 - L2 LINE L2 -1466 1848 1653 1714 140 3 3 chr6 50724416 50724709 -131690533 - L1M2 LINE L1 -682 5609 5317 430 216 52 17 chr6 50724796 50724912 -131690330 + L1MD3 LINE L1 7742 7861 -134 * 2002 174 13 11 chr6 50724908 50725282 -131689960 - L1M2 LINE L1 -864 5282 4908 3505 145 49 22 chr6 50725282 50725947 -131689295 + L1MA8 LINE L1 5598 6285 -6 187 322 126 23 chr6 50726196 50726283 -131688959 + MIR3 SINE MIR 85 180 -28 288 0 0 0 chr6 50727056 50727088 -131688154 + (TG)n Simple_repeat Simple_repeat 2 33 0 1729 256 170 103 chr6 50727574 50727656 -131687586 - L2 LINE L2 -1656 1658 1583 2351 84 0 16 chr6 50727656 50727966 -131687276 - AluY SINE Alu -6 305 1 1729 256 170 103 chr6 50727966 50728879 -131686363 - L2 LINE L2 -1731 1583 597 195 396 55 0 chr6 50729509 50729600 -131685642 - L2 LINE L2 -38 3275 3180 293 217 43 11 chr6 50729700 50729792 -131685450 + GA-rich Low_complexity Low_complexity 1 95 0 1312 154 8 69 chr6 50729819 50730079 -131685163 - AluJo SINE Alu -19 293 50 265 216 20 0 chr6 50730194 50730245 -131684997 + MER39 LTR ERV1 1 52 -655 201 241 0 19 chr6 50730665 50730719 -131684523 + CT-rich Low_complexity Low_complexity 5 57 0 29697 42 6 0 chr6 50730782 50734519 -131680723 + L1P LINE L1 1006 4762 -1384 21 0 0 0 chr6 50734630 50734651 -131680591 + AT_rich Low_complexity Low_complexity 1 21 0 6659 60 12 0 chr6 50734659 50736088 -131679154 - L1PA7 LINE L1 -45 6109 4671 28 0 0 0 chr6 50736122 50736150 -131679092 + AT_rich Low_complexity Low_complexity 1 28 0 40 21 0 0 chr6 50736217 50736264 -131678978 + AT_rich Low_complexity Low_complexity 1 47 0 574 156 0 0 chr6 50736638 50736734 -131678508 - FLAM_A SINE Alu -4 138 43 2235 73 6 60 chr6 50736917 50737234 -131678008 + AluY SINE Alu 1 300 -11 376 256 49 13 chr6 50737237 50737380 -131677862 + MER39 LTR ERV1 174 455 -252 507 206 10 0 chr6 50737381 50737483 -131677759 + MER39 LTR ERV1 580 682 -25 * 1639 249 69 4 chr6 50737478 50737939 -131677303 + MER39 LTR ERV1 215 705 -2 890 229 47 83 chr6 50737950 50738251 -131676991 + L1M4 LINE L1 582 871 -5671 35 24 0 0 chr6 50738306 50738348 -131676894 + AT_rich Low_complexity Low_complexity 1 42 0 404 248 148 0 chr6 50738351 50738500 -131676742 + L1M4 LINE L1 879 1049 -5493 * 6054 141 6 23 chr6 50738495 50740160 -131675082 + L1PB1 LINE L1 4514 6151 0 631 203 34 40 chr6 50740158 50740335 -131674907 + L1M4 LINE L1 1040 1215 -5327 * 192 111 0 0 chr6 50740783 50740819 -131674423 + (A)n Simple_repeat Simple_repeat 1 36 0 228 233 0 0 chr6 50741614 50741657 -131673585 + MIR SINE MIR 112 154 -108 263 250 0 0 chr6 50741688 50741748 -131673494 - L2 LINE L2 0 3272 3213 * 268 239 60 0 chr6 50741747 50741814 -131673428 + MIR SINE MIR 165 235 -27 10464 129 10 0 chr6 50742457 50744915 -131670327 + L1PA10 LINE L1 3709 6167 -1 189 0 0 0 chr6 50745194 50745215 -131670027 + (T)n Simple_repeat Simple_repeat 1 21 0 42522 35 22 1 chr6 50745748 50751777 -131663465 + L1PA2 LINE L1 1 6155 0 218 56 28 0 chr6 50752278 50752314 -131662928 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 2270 83 33 3 chr6 50753762 50754064 -131661178 + AluSq SINE Alu 1 311 -2 401 295 64 6 chr6 50755336 50755492 -131659750 - MIR SINE MIR -25 237 73 307 238 48 19 chr6 50755538 50755643 -131659599 - HsTC2 DNA Tc2 -1 1897 1790 419 196 159 0 chr6 50755644 50755751 -131659491 + MER5C DNA MER1_type 1 124 -200 224 222 222 0 chr6 50755762 50755843 -131659399 + MER5C DNA MER1_type 226 324 0 919 209 127 60 chr6 50755845 50756176 -131659066 - HsTC2 DNA Tc2 -113 1785 1257 332 241 48 0 chr6 50756674 50756757 -131658485 - L1ME4a LINE L1 -12 6109 6023 332 314 66 8 chr6 50757436 50757557 -131657685 + L1ME2 LINE L1 4906 5033 -1113 674 218 22 11 chr6 50757642 50757868 -131657374 + L1ME2 LINE L1 5267 5495 -669 640 254 114 38 chr6 50757870 50758106 -131657136 + L1ME2 LINE L1 5883 6136 -28 189 205 0 0 chr6 50758206 50758245 -131656997 - L2 LINE L2 -4 3268 3230 21 36 0 0 chr6 50759334 50759362 -131655880 + AT_rich Low_complexity Low_complexity 1 28 0 2184 147 0 0 chr6 50760645 50760957 -131654285 + AluJo SINE Alu 1 312 0 1070 152 0 0 chr6 50761320 50761471 -131653771 - AluSq SINE Alu -160 153 3 2263 237 14 17 chr6 50761679 50762000 -131653242 - L1M1 LINE L1 -4170 3396 3076 198 71 0 0 chr6 50762000 50762028 -131653214 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2263 237 14 17 chr6 50762028 50762326 -131652916 - L1M1 LINE L1 -4490 3076 2577 1959 113 4 4 chr6 50762330 50762605 -131652637 + AluY SINE Alu 2 276 -35 379 191 16 24 chr6 50762668 50762794 -131652448 + GA-rich Low_complexity Low_complexity 2 126 0 5945 145 33 5 chr6 50762811 50764358 -131650884 + L1MA3 LINE L1 4702 6288 -17 21 57 0 0 chr6 50764396 50764431 -131650811 + AT_rich Low_complexity Low_complexity 1 35 0 579 246 113 20 chr6 50764711 50764906 -131650336 + L2 LINE L2 3101 3313 0 7476 190 31 26 chr6 50765325 50766465 -131648777 + L1PA16 LINE L1 3371 4504 -1662 2236 95 0 0 chr6 50766465 50766790 -131648452 - AluSg SINE Alu 0 325 1 7476 190 31 26 chr6 50766790 50768424 -131646818 + L1PA16 LINE L1 4504 6157 -9 34 0 0 0 chr6 50768424 50768458 -131646784 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 50768552 50768574 -131646668 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr6 50770122 50770154 -131645088 + AT_rich Low_complexity Low_complexity 1 32 0 314 269 188 13 chr6 50771765 50771914 -131643328 - MIR SINE MIR -56 206 32 212 287 127 86 chr6 50772771 50773095 -131642147 + L2 LINE L2 2305 2641 -673 253 125 21 21 chr6 50774701 50774749 -131640493 - L3 LINE CR1 -3 1574 1527 490 273 22 7 chr6 50774830 50774969 -131640273 + MIR SINE MIR 51 191 -71 31 0 0 0 chr6 50775189 50775220 -131640022 + AT_rich Low_complexity Low_complexity 1 31 0 2259 109 3 0 chr6 50775769 50776072 -131639170 + AluSq SINE Alu 1 304 -9 23 0 0 0 chr6 50776523 50776546 -131638696 + AT_rich Low_complexity Low_complexity 1 23 0 201 343 0 0 chr6 50776636 50776706 -131638536 + MIR SINE MIR 187 256 -6 333 219 0 0 chr6 50779491 50779564 -131635678 + MER116 DNA Mariner 6 78 -2 215 338 0 0 chr6 50779565 50779633 -131635609 + MIR3 SINE MIR 141 208 0 5158 162 48 30 chr6 50783285 50783727 -131631515 + L1MA5 LINE L1 4887 5319 -981 767 182 8 0 chr6 50783727 50783859 -131631383 + FLAM_A SINE Alu 1 133 0 5158 162 48 30 chr6 50783859 50784444 -131630798 + L1MA5 LINE L1 5319 5956 -344 2337 80 3 0 chr6 50784444 50784746 -131630496 + AluSp SINE Alu 1 303 -10 5158 162 48 30 chr6 50784746 50785096 -131630146 + L1MA5 LINE L1 5956 6298 -2 296 276 37 30 chr6 50785268 50785402 -131629840 + L1ME1 LINE L1 5977 6111 -55 22 0 0 0 chr6 50785444 50785466 -131629776 + AT_rich Low_complexity Low_complexity 1 22 0 412 242 132 57 chr6 50785705 50785962 -131629280 + L1M4 LINE L1 1234 1515 -5344 2064 120 13 3 chr6 50785962 50786261 -131628981 + AluSx SINE Alu 3 304 -8 412 242 132 57 chr6 50786261 50786284 -131628958 + L1M4 LINE L1 1515 1535 -5324 365 275 70 41 chr6 50786785 50786956 -131628286 + L1M4 LINE L1 1762 1937 -5201 1125 272 66 21 chr6 50787072 50787606 -131627636 + L1M4 LINE L1 1947 2687 -4451 417 294 81 2 chr6 50787706 50787953 -131627289 - L1MDa LINE L1 -4679 1703 1320 369 286 78 38 chr6 50787956 50788623 -131626619 + L1M4 LINE L1 5176 5869 -1088 1266 139 59 130 chr6 50788642 50788966 -131626276 - Tigger1 DNA MER2_type 0 2418 2118 279 315 15 8 chr6 50788979 50789109 -131626133 + L1ME1 LINE L1 6030 6160 -6 1877 177 0 0 chr6 50789450 50789760 -131625482 + AluJb SINE Alu 1 310 -2 2272 100 3 0 chr6 50789832 50790133 -131625109 - AluSx SINE Alu -7 305 4 553 341 85 20 chr6 50790726 50791125 -131624117 + L1MEd LINE L1 350 774 -5345 793 220 17 0 chr6 50791318 50791491 -131623751 + L1 LINE L1 3989 4164 -1982 965 153 6 35 chr6 50791491 50791661 -131623581 + AluJo SINE Alu 1 165 -147 316 176 0 27 chr6 50791662 50791736 -131623506 + ERVL LTR ERVL 5372 5443 -321 899 296 55 12 chr6 50791811 50792300 -131622942 + L1M4 LINE L1 3811 4320 -1826 359 279 106 6 chr6 50792343 50792522 -131622720 + L1M4 LINE L1 4631 4827 -1319 187 321 38 0 chr6 50792522 50792575 -131622667 + L2 LINE L2 3192 3246 -67 2250 94 0 0 chr6 50794334 50794631 -131620611 - AluSg SINE Alu -13 297 1 27 0 0 0 chr6 50794638 50794665 -131620577 + AT_rich Low_complexity Low_complexity 1 27 0 280 217 0 0 chr6 50794716 50794762 -131620480 + MER81 DNA DNA 2 47 -67 464 268 63 14 chr6 50795285 50795427 -131619815 + MIR3 SINE MIR 33 181 -27 23 0 0 0 chr6 50795600 50795623 -131619619 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 50796263 50796284 -131618958 + AT_rich Low_complexity Low_complexity 1 21 0 2018 98 37 17 chr6 50796852 50797148 -131618094 + AluSx SINE Alu 1 302 -10 27 29 0 0 chr6 50797345 50797379 -131617863 + AT_rich Low_complexity Low_complexity 1 34 0 536 241 78 61 chr6 50797487 50797732 -131617510 - L2 LINE L2 -2 3311 3063 23 68 0 0 chr6 50797771 50797815 -131617427 + AT_rich Low_complexity Low_complexity 1 44 0 384 313 20 27 chr6 50798087 50798234 -131617008 - MIR3 SINE MIR -5 203 58 356 276 57 0 chr6 50798692 50798797 -131616445 - MER103 DNA DNA -2 164 54 219 197 0 127 chr6 50799063 50799134 -131616108 - L2 LINE L2 -7 3306 3245 408 246 9 0 chr6 50799536 50799646 -131615596 - L1MC4 LINE L1 -1 8041 7931 303 318 46 40 chr6 50799810 50799961 -131615281 - L3 LINE CR1 -182 1395 1244 936 205 19 5 chr6 50800012 50800222 -131615020 - L1MB7 LINE L1 -10 6174 5962 380 322 110 26 chr6 50800468 50800695 -131614547 - L3 LINE CR1 -929 648 403 189 426 96 0 chr6 50801877 50802013 -131613229 + L2 LINE L2 2905 3053 -219 421 298 206 16 chr6 50802125 50802373 -131612869 + MLT1H LTR MaLR 124 418 -131 515 283 187 5 chr6 50803272 50803459 -131611783 - MIR SINE MIR -10 252 32 642 241 0 0 chr6 50803603 50803736 -131611506 + FLAM_C SINE Alu 1 133 0 2343 81 7 7 chr6 50804965 50805273 -131609969 - AluSq SINE Alu -5 308 1 847 205 6 6 chr6 50806664 50806835 -131608407 - FRAM SINE Alu -5 171 1 23 101 0 0 chr6 50806848 50806927 -131608315 + AT_rich Low_complexity Low_complexity 1 79 0 683 260 25 83 chr6 50806976 50807338 -131607904 - MER58B DNA MER1_type 0 341 1 1968 120 27 7 chr6 50807658 50807957 -131607285 + AluSx SINE Alu 1 305 -7 26 64 0 0 chr6 50807987 50808034 -131607208 + AT_rich Low_complexity Low_complexity 1 47 0 1879 187 52 35 chr6 50808035 50808494 -131606748 + MLT1C LTR MaLR 1 467 0 556 252 15 0 chr6 50808785 50808916 -131606326 + Zaphod DNA AcHobo 391 523 -3508 308 254 16 0 chr6 50808921 50808984 -131606258 + Zaphod DNA AcHobo 3967 4030 -1 24 0 0 0 chr6 50810302 50810326 -131604916 + AT_rich Low_complexity Low_complexity 1 24 0 2090 135 0 0 chr6 50810331 50810635 -131604607 + AluSg SINE Alu 1 304 -6 654 288 39 5 chr6 50810683 50810888 -131604354 - MIR SINE MIR -37 225 14 827 220 82 13 chr6 50810902 50811207 -131604035 - L1M4 LINE L1 -2882 3264 2939 669 238 78 0 chr6 50811210 50811403 -131603839 - L1M4 LINE L1 -3618 2528 2321 302 328 52 22 chr6 50811495 50811522 -131603720 - L1MC4 LINE L1 -1310 6732 6707 2189 91 10 3 chr6 50811522 50811819 -131603423 + AluSc SINE Alu 1 299 -10 302 328 52 22 chr6 50811819 50811925 -131603317 - L1MC4 LINE L1 -1335 6707 6595 2256 108 0 0 chr6 50812115 50812411 -131602831 - AluSx SINE Alu -16 296 1 250 263 120 51 chr6 50812991 50813166 -131602076 + MER113 DNA MER1_type? 10 196 -325 2308 146 37 30 chr6 50813435 50813927 -131601315 - L1MB7 LINE L1 -9 6175 5681 183 42 0 0 chr6 50814110 50814134 -131601108 + (A)n Simple_repeat Simple_repeat 1 24 0 2435 78 3 0 chr6 50814137 50814443 -131600799 - AluSp SINE Alu -6 307 1 353 321 65 22 chr6 50814456 50814640 -131600602 + MIR3 SINE MIR 8 199 -9 1083 203 102 29 chr6 50815286 50815601 -131599641 - MER44D DNA MER2_type 0 609 2 404 292 130 6 chr6 50816253 50816414 -131598828 - MIR SINE MIR -70 192 12 361 244 51 39 chr6 50816949 50817105 -131598137 + L1MB7 LINE L1 44 201 -6341 509 178 0 0 chr6 50817337 50817427 -131597815 + MLT1A1 LTR MaLR 9 98 -276 2026 202 39 0 chr6 50817448 50817829 -131597413 - MSTD LTR MaLR 0 396 1 1733 163 80 3 chr6 50817829 50818167 -131597075 - MSTD-int LTR MaLR 0 1735 1372 2849 272 58 36 chr6 50818167 50819047 -131596195 - MSTD-int LTR MaLR -519 1216 318 750 258 55 14 chr6 50819067 50819284 -131595958 + MLT1A1 LTR MaLR 133 358 -7 1878 234 132 45 chr6 50819679 50821263 -131593979 + L1MB7 LINE L1 875 2721 -4104 * 3007 229 60 9 chr6 50821257 50822031 -131593211 + L1MB7 LINE L1 5605 6442 -240 219 36 0 0 chr6 50822031 50822059 -131593183 + (TG)n Simple_repeat Simple_repeat 1 28 0 3007 229 60 9 chr6 50822059 50822301 -131592941 + L1MB7 LINE L1 6442 6670 -12 23 33 0 0 chr6 50822559 50822589 -131592653 + AT_rich Low_complexity Low_complexity 1 30 0 1775 166 49 24 chr6 50822794 50824483 -131590759 + L1PB2 LINE L1 1 1646 -5221 2311 109 3 0 chr6 50824483 50824794 -131590448 + AluSx SINE Alu 1 312 0 1775 166 49 24 chr6 50824794 50825882 -131589360 + L1PB2 LINE L1 1646 2705 -4162 2354 98 3 0 chr6 50825882 50826189 -131589053 + AluSp SINE Alu 2 309 -4 1775 166 49 24 chr6 50826189 50830012 -131585230 + L1PB2 LINE L1 2705 6865 -2 684 306 15 23 chr6 50830400 50830661 -131584581 - MIR SINE MIR -3 259 1 440 304 61 0 chr6 50831646 50831794 -131583448 - MIR SINE MIR -31 231 75 276 61 0 0 chr6 50833298 50833331 -131581911 + U2 snRNA snRNA 1 33 -155 657 239 34 51 chr6 50833347 50833523 -131581719 + MER5B DNA MER1_type 1 173 -5 293 290 76 30 chr6 50833994 50834125 -131581117 + L2 LINE L2 2024 2160 -1154 2329 83 3 3 chr6 50834146 50834446 -131580796 - AluSg SINE Alu -10 300 1 2076 289 113 21 chr6 50835238 50835919 -131579323 + L2 LINE L2 1964 2581 -732 2055 128 3 3 chr6 50835919 50836217 -131579025 - AluSx SINE Alu -14 298 1 2076 289 113 21 chr6 50836217 50836782 -131578460 + L2 LINE L2 2581 3309 -4 1089 137 6 0 chr6 50837014 50837175 -131578067 + AluSx SINE Alu 1 162 -150 240 0 31 0 chr6 50837179 50837211 -131578031 - MER4E LTR ERV1 -726 40 8 2337 89 0 7 chr6 50837211 50837514 -131577728 + AluSx SINE Alu 1 301 -11 1648 188 131 32 chr6 50837849 50838345 -131576897 + LTR48 LTR ERV1 240 784 -3 1997 201 100 22 chr6 50838651 50839153 -131576089 - MER87 LTR ERV1 0 541 1 28 79 0 0 chr6 50839955 50840018 -131575224 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr6 50840171 50840192 -131575050 + AT_rich Low_complexity Low_complexity 1 21 0 510 152 29 38 chr6 50840805 50840910 -131574332 - MER5B DNA MER1_type 0 178 75 232 159 16 16 chr6 50840920 50840983 -131574259 + (TA)n Simple_repeat Simple_repeat 2 64 0 2283 80 3 0 chr6 50840983 50841271 -131573971 - AluSg SINE Alu -21 289 1 276 203 17 17 chr6 50841272 50841331 -131573911 + MER5B DNA MER1_type 116 174 -4 77 12 0 0 chr6 50841470 50841554 -131573688 + AT_rich Low_complexity Low_complexity 1 84 0 405 0 0 0 chr6 50841627 50841672 -131573570 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 315 49 0 0 chr6 50841683 50841724 -131573518 + (TA)n Simple_repeat Simple_repeat 2 42 0 593 110 0 0 chr6 50841724 50841806 -131573436 - AluSg/x SINE Alu -12 300 219 1087 249 93 0 chr6 50841995 50842252 -131572990 + MER69 DNA AcHobo 240 520 -2006 2129 123 105 10 chr6 50844297 50844686 -131570556 + MSTB LTR MaLR 1 426 0 186 43 0 0 chr6 50845646 50845669 -131569573 + (GAA)n Simple_repeat Simple_repeat 2 24 0 1398 202 35 14 chr6 50845671 50845958 -131569284 + AluJo SINE Alu 1 293 -19 255 328 62 11 chr6 50846931 50847108 -131568134 - MLT1L LTR MaLR 0 615 430 21 0 0 0 chr6 50847217 50847238 -131568004 + AT_rich Low_complexity Low_complexity 1 21 0 1104 215 19 0 chr6 50847336 50847541 -131567701 - MER82 DNA MER2_type -1 652 444 332 314 66 7 chr6 50847575 50847712 -131567530 + MIR SINE MIR 2 146 -116 403 277 0 0 chr6 50847794 50847888 -131567354 - MER82 DNA MER2_type -559 94 1 226 150 33 33 chr6 50848234 50848294 -131566948 + L1ME LINE L1 17 76 -6347 1976 265 63 27 chr6 50848360 50849335 -131565907 + L1ME LINE L1 780 1794 -4922 303 266 18 0 chr6 50849321 50849430 -131565812 + L1ME LINE L1 5984 6094 -847 * 1648 206 3 0 chr6 50849434 50849720 -131565522 + AluJb SINE Alu 1 287 -25 2256 81 17 3 chr6 50849730 50850026 -131565216 + AluY SINE Alu 1 300 -11 211 269 0 19 chr6 50850026 50850071 -131565171 + GA-rich Low_complexity Low_complexity 6 51 0 1512 185 22 39 chr6 50850076 50850439 -131564803 + L1ME LINE L1 6076 6432 -529 2245 117 3 0 chr6 50851224 50851533 -131563709 - AluSp SINE Alu -2 311 2 1038 160 30 0 chr6 50851687 50851856 -131563386 - MER46A DNA MER2_type 0 236 63 * 1191 100 0 0 chr6 50851852 50852012 -131563230 + MER4A LTR ERV1 505 664 0 228 247 216 31 chr6 50852552 50852649 -131562593 - MIR3 SINE MIR -11 197 83 22 103 0 0 chr6 50852747 50852825 -131562417 + AT_rich Low_complexity Low_complexity 1 78 0 2240 103 7 0 chr6 50855137 50855439 -131559803 - AluSg SINE Alu -6 304 1 2408 91 0 0 chr6 50855486 50855794 -131559448 - AluSc SINE Alu -1 308 1 2252 105 3 0 chr6 50856017 50856312 -131558930 - AluSg SINE Alu -14 296 1 268 279 0 0 chr6 50856796 50856864 -131558378 - MIR SINE MIR -21 241 174 774 182 0 0 chr6 50858320 50858452 -131556790 + FLAM_A SINE Alu 2 133 0 26 0 0 0 chr6 50858452 50858478 -131556764 + AT_rich Low_complexity Low_complexity 1 26 0 1308 167 142 39 chr6 50858651 50858981 -131556261 - THE1B LTR MaLR 0 364 1 17657 37 25 4 chr6 50859484 50865321 -131549921 + L1PA3 LINE L1 1 6166 0 2080 126 0 16 chr6 50865663 50865980 -131549262 - AluSx SINE Alu 0 312 1 290 44 89 0 chr6 50865989 50866034 -131549208 - L1MC1 LINE L1 0 6333 6285 2917 177 39 8 chr6 50866183 50866777 -131548465 + L1MB4 LINE L1 5427 6038 -142 1641 153 69 35 chr6 50866783 50867134 -131548108 - MSTB LTR MaLR 0 375 1 1387 164 90 32 chr6 50867152 50867615 -131547627 + L1MC2 LINE L1 5795 6339 -5 615 141 50 0 chr6 50867616 50867737 -131547505 + L1MB4 LINE L1 6052 6178 -2 609 261 77 89 chr6 50867980 50868383 -131546859 + L1MC2 LINE L1 60 457 -6083 1015 249 67 30 chr6 50868835 50869227 -131546015 + MER65B LTR ERV1 1 520 -11 1151 171 66 3 chr6 50869677 50869964 -131545278 + L1MC2 LINE L1 1088 1392 -5151 243 171 0 144 chr6 50869959 50870070 -131545172 + L1MC2 LINE L1 3902 3996 -2544 * 576 213 65 85 chr6 50870099 50870399 -131544843 + MER39 LTR ERV1 117 535 -172 557 199 46 30 chr6 50870410 50870541 -131544701 + FLAM_A SINE Alu 1 133 0 2087 136 0 0 chr6 50870556 50870851 -131544391 + AluSq SINE Alu 1 295 -18 380 203 54 40 chr6 50870868 50871037 -131544205 + MER34 LTR ERV1 370 702 -5 1078 184 33 108 chr6 50871041 50871277 -131543965 + L1MC2 LINE L1 3968 4159 -2381 4131 168 24 6 chr6 50871277 50871997 -131543245 + MER44D DNA MER2_type 1 605 0 1078 184 33 108 chr6 50871997 50872185 -131543057 + L1MC2 LINE L1 4159 4360 -2180 788 166 29 0 chr6 50872386 50872525 -131542717 - FLAM_C SINE Alu 0 143 1 21 0 0 0 chr6 50872549 50872570 -131542672 + AT_rich Low_complexity Low_complexity 1 21 0 408 237 107 0 chr6 50873500 50873631 -131541611 + MER103 DNA DNA 3 147 -19 4989 156 47 8 chr6 50874063 50875027 -131540215 + L1MC2 LINE L1 5580 6585 -153 379 126 149 0 chr6 50875029 50875116 -131540126 + L1MC2 LINE L1 6624 6723 -15 259 284 0 12 chr6 50876653 50876734 -131538508 - MER112 DNA MER1_type -171 89 10 1286 116 0 0 chr6 50876985 50877158 -131538084 + AluSq SINE Alu 129 301 -12 422 277 163 30 chr6 50879228 50879430 -131535812 + MIR SINE MIR 8 236 -26 486 256 273 11 chr6 50883985 50884161 -131531081 - MIR SINE MIR -21 241 20 24 0 0 0 chr6 50884906 50884930 -131530312 + AT_rich Low_complexity Low_complexity 1 24 0 496 362 58 62 chr6 50886706 50887206 -131528036 + L2 LINE L2 2412 2909 -405 2135 111 4 0 chr6 50887408 50887723 -131527519 + AluSx SINE Alu 3 318 0 2218 107 3 0 chr6 50888964 50889262 -131525980 + AluSx SINE Alu 9 307 -5 182 306 0 20 chr6 50889266 50889315 -131525927 - MIR SINE MIR -156 106 59 2529 281 104 50 chr6 50889524 50891000 -131524242 - L2 LINE L2 0 3313 1666 13055 142 23 46 chr6 50891009 50891887 -131523355 + Tigger1 DNA MER2_type 94 991 -1427 2065 139 3 3 chr6 50891887 50892190 -131523052 + AluSc SINE Alu 3 305 -4 13055 142 23 46 chr6 50892190 50893563 -131521679 + Tigger1 DNA MER2_type 991 2289 -129 3526 115 14 50 chr6 50893563 50894182 -131521060 + MER4A LTR ERV1 4 600 0 13055 142 23 46 chr6 50894182 50894310 -131520932 + Tigger1 DNA MER2_type 2289 2418 0 24 53 0 0 chr6 50894879 50894917 -131520325 + AT_rich Low_complexity Low_complexity 1 38 0 2150 118 0 0 chr6 50895009 50895305 -131519937 + AluSc SINE Alu 1 296 -13 1809 153 19 16 chr6 50895322 50895629 -131519613 + AluSg1 SINE Alu 1 308 -1 527 322 64 4 chr6 50895895 50895922 -131519320 - HAL1 LINE L1 -701 1806 1782 603 0 0 0 chr6 50895922 50895989 -131519253 + (TG)n Simple_repeat Simple_repeat 2 68 0 527 322 64 4 chr6 50895989 50896225 -131519017 - HAL1 LINE L1 -725 1782 1527 1467 209 20 10 chr6 50896873 50897170 -131518072 + AluJo SINE Alu 1 300 -12 251 186 0 17 chr6 50897200 50897259 -131517983 + (TA)n Simple_repeat Simple_repeat 1 58 0 204 216 0 0 chr6 50897293 50897344 -131517898 + (CATA)n Simple_repeat Simple_repeat 2 52 0 2685 193 30 19 chr6 50898097 50898630 -131516612 + MER44D DNA MER2_type 9 602 -3 372 250 0 75 chr6 50898692 50898783 -131516459 - MIR SINE MIR -12 250 169 1544 205 0 10 chr6 50898783 50899085 -131516157 - AluJo SINE Alu -11 301 3 372 250 0 75 chr6 50899085 50899113 -131516129 - MIR SINE MIR -93 169 140 3479 181 43 55 chr6 50899114 50899254 -131515988 - L1MB8 LINE L1 -2 6176 6036 2407 85 0 0 chr6 50899254 50899560 -131515682 + AluY SINE Alu 1 306 -5 3479 181 43 55 chr6 50899560 50899583 -131515659 - L1MB8 LINE L1 -142 6036 6014 1805 183 46 3 chr6 50899583 50899933 -131515309 - MLT1A1 LTR MaLR 0 365 1 3479 181 43 55 chr6 50899933 50900553 -131514689 - L1MB8 LINE L1 -164 6014 5401 474 220 17 17 chr6 50900593 50900711 -131514531 - MIR SINE MIR -111 151 34 320 243 63 18 chr6 50900793 50900904 -131514338 - MLT1L LTR MaLR -328 287 172 1089 143 174 39 chr6 50900920 50901160 -131514082 - MSTD LTR MaLR -6 390 70 3196 138 26 0 chr6 50901160 50901661 -131513581 + MER75 DNA T2_type 1 514 0 1089 143 174 39 chr6 50901661 50901742 -131513500 - MSTD LTR MaLR -326 70 1 4884 204 62 35 chr6 50902711 50904589 -131510653 + L1MD2 LINE L1 4424 6356 -3 23 33 0 0 chr6 50904766 50904796 -131510446 + AT_rich Low_complexity Low_complexity 1 30 0 41 48 0 0 chr6 50905167 50905229 -131510013 + AT_rich Low_complexity Low_complexity 1 62 0 1881 98 0 0 chr6 50905751 50905995 -131509247 + AluSg SINE Alu 58 301 -9 2267 123 0 0 chr6 50906194 50906503 -131508739 + AluSq SINE Alu 2 310 -3 21 36 0 0 chr6 50906707 50906735 -131508507 + AT_rich Low_complexity Low_complexity 1 28 0 329 227 52 31 chr6 50907244 50907341 -131507901 - MIR SINE MIR 0 262 164 189 121 0 0 chr6 50907516 50907549 -131507693 + (TG)n Simple_repeat Simple_repeat 2 34 0 1169 169 12 75 chr6 50907653 50907746 -131507496 + AluJo SINE Alu 37 134 -178 2025 93 57 0 chr6 50907746 50908025 -131507217 - AluSg SINE Alu -15 295 1 1169 169 12 75 chr6 50908025 50908186 -131507056 + AluJo SINE Alu 134 275 -37 185 81 0 27 chr6 50908196 50908233 -131507009 + (TA)n Simple_repeat Simple_repeat 2 37 0 507 175 155 0 chr6 50908236 50908339 -131506903 - FLAM_C SINE Alu -24 119 1 26 30 0 0 chr6 50908451 50908484 -131506758 + AT_rich Low_complexity Low_complexity 1 33 0 25 65 0 0 chr6 50909092 50909138 -131506104 + AT_rich Low_complexity Low_complexity 1 46 0 895 244 95 76 chr6 50909364 50909773 -131505469 + MLT2D LTR ERVL 5 421 -43 194 31 62 0 chr6 50909831 50909852 -131505390 + A-rich Low_complexity Low_complexity 1 26 -8 1835 152 32 0 chr6 50909852 50910135 -131505107 - AluSx SINE Alu -20 292 1 39 0 0 0 chr6 50910382 50910421 -131504821 + AT_rich Low_complexity Low_complexity 1 39 0 405 323 94 9 chr6 50910661 50910884 -131504358 - MIR SINE MIR 0 262 21 1839 178 35 31 chr6 50910886 50911340 -131503902 - L1MA4A LINE L1 0 6303 5848 9136 238 64 36 chr6 50911390 50911857 -131503385 - L1 LINE L1 -3466 3382 2930 225 0 0 0 chr6 50911857 50911882 -131503360 + (TA)n Simple_repeat Simple_repeat 1 25 0 2174 95 3 3 chr6 50911882 50912165 -131503077 - AluSc SINE Alu -26 283 1 9136 238 64 36 chr6 50912165 50914967 -131500275 - L1 LINE L1 -3917 2931 21 1946 126 0 0 chr6 50915477 50915755 -131499487 + AluSx SINE Alu 35 312 0 3246 129 16 4 chr6 50916924 50917429 -131497813 + MER9 LTR ERVK 1 511 0 4558 83 34 22 chr6 50917429 50918102 -131497140 + HERVK9 LTR ERVK 1 681 -5235 * 26340 118 25 27 chr6 50918087 50922388 -131492854 + HERVK9 LTR ERVK 1625 5916 0 3320 111 18 10 chr6 50922388 50922895 -131492347 + MER9 LTR ERVK 1 511 0 733 298 60 37 chr6 50923469 50924107 -131491135 + L1MEc LINE L1 287 909 -5306 2179 114 3 13 chr6 50924107 50924415 -131490827 + AluSx SINE Alu 1 305 -7 733 298 60 37 chr6 50924415 50924959 -131490283 + L1MEc LINE L1 909 3581 -2634 1869 126 28 11 chr6 50925086 50925371 -131489871 - AluJo SINE Alu -22 290 1 328 248 120 15 chr6 50925428 50925561 -131489681 - MER117 DNA MER1_type -49 148 2 4633 180 29 6 chr6 50926472 50927619 -131487623 - L1MB4 LINE L1 -8 6172 4998 1113 246 52 10 chr6 50927822 50928209 -131487033 + L1ME LINE L1 2777 3179 -2967 572 278 0 0 chr6 50928260 50928433 -131486809 + L1ME LINE L1 3297 3469 -2677 847 247 62 97 chr6 50928437 50928902 -131486340 + MER68 LTR ERV1 5 453 -109 2064 222 31 57 chr6 50928910 50929832 -131485410 + L1ME LINE L1 4633 5519 -647 2185 99 14 3 chr6 50929832 50930126 -131485116 + AluSc SINE Alu 1 297 -12 2064 222 31 57 chr6 50930126 50930252 -131484990 + L1ME LINE L1 5519 5647 -519 1611 255 106 94 chr6 50930620 50932024 -131483218 + HAL1 LINE L1 77 1502 -1005 1621 146 82 21 chr6 50932024 50932305 -131482937 - AluJo SINE Alu -14 298 1 1611 255 106 94 chr6 50932305 50932392 -131482850 + HAL1 LINE L1 1502 1586 -921 342 0 0 0 chr6 50932591 50932629 -131482613 + (CA)n Simple_repeat Simple_repeat 1 38 0 236 258 183 11 chr6 50933356 50933449 -131481793 - MIR SINE MIR -70 192 84 217 245 0 0 chr6 50933907 50933956 -131481286 - L2 LINE L2 0 3272 3224 22957 42 0 3 chr6 50934396 50937284 -131477958 - L1P LINE L1 -1219 4927 2049 180 0 0 0 chr6 50938540 50938560 -131476682 + (A)n Simple_repeat Simple_repeat 1 20 0 1285 226 4 11 chr6 50939089 50939359 -131475883 + AluJo SINE Alu 1 268 -44 4640 220 45 49 chr6 50939466 50941368 -131473874 + L1M2 LINE L1 1342 3231 -3617 1064 189 46 0 chr6 50941365 50941648 -131473594 + L1MA5 LINE L1 5845 6300 0 * 871 194 58 92 chr6 50941662 50941719 -131473523 + L1MDa LINE L1 2241 2298 -4242 2069 125 0 0 chr6 50941719 50942026 -131473216 + AluSg SINE Alu 1 307 0 871 194 58 92 chr6 50942026 50942134 -131473108 + L1MDa LINE L1 2298 2408 -4132 2006 159 7 0 chr6 50942134 50942442 -131472800 + AluSx SINE Alu 1 310 -2 871 194 58 92 chr6 50942442 50942656 -131472586 + L1MDa LINE L1 2408 2609 -3931 3959 232 82 63 chr6 50942666 50942972 -131472270 + L1MDa LINE L1 2663 2962 -3578 2301 88 0 14 chr6 50942972 50943266 -131471976 + AluSp SINE Alu 1 290 -23 3959 232 82 63 chr6 50943266 50944284 -131470958 + L1MDa LINE L1 2962 4040 -2500 2309 107 0 7 chr6 50944284 50944594 -131470648 + AluSg SINE Alu 2 309 -1 3959 232 82 63 chr6 50944594 50945219 -131470023 + L1MDa LINE L1 4040 4651 -1889 403 39 0 0 chr6 50945245 50945297 -131469945 + L1PA6 LINE L1 5034 5085 -1061 4823 55 20 0 chr6 50945297 50945901 -131469341 + L1PA6 LINE L1 5532 6147 -7 269 224 123 29 chr6 50945923 50946093 -131469149 + L1MDa LINE L1 4686 4871 -1669 473 82 0 0 chr6 50996093 50996154 -131419088 - Alu SINE Alu -248 62 2 1613 176 22 41 chr6 50996241 50996559 -131418683 + AluJb SINE Alu 1 312 0 30 0 0 0 chr6 50996704 50996734 -131418508 + AT_rich Low_complexity Low_complexity 1 30 0 209 275 99 0 chr6 50997829 50997920 -131417322 - L2 LINE L2 0 3272 3173 2520 61 0 0 chr6 50997980 50998275 -131416967 - AluY SINE Alu -16 295 1 867 278 130 20 chr6 50998544 50998998 -131416244 + L2 LINE L2 1712 2215 -1099 1432 242 78 32 chr6 50999078 50999553 -131415689 + L2 LINE L2 2816 3312 -1 180 80 0 0 chr6 50999694 50999719 -131415523 + L2 LINE L2 3229 3253 -19 575 240 34 29 chr6 51000496 51000671 -131414571 - MIR SINE MIR -17 245 70 251 198 0 123 chr6 51000866 51000909 -131414333 + MER3 DNA MER1_type 16 48 -161 348 252 150 7 chr6 51000909 51001056 -131414186 - MER3 DNA MER1_type -1 208 41 293 341 0 0 chr6 51001257 51001348 -131413894 - MIR SINE MIR -124 138 48 2383 97 0 0 chr6 51001435 51001735 -131413507 - AluSx SINE Alu -12 300 1 652 159 12 38 chr6 51002591 51002856 -131412386 + GA-rich Low_complexity Low_complexity 1 258 0 24 32 0 0 chr6 51003135 51003166 -131412076 + GC_rich Low_complexity Low_complexity 1 31 0 281 257 71 57 chr6 51005574 51005714 -131409528 + LTR65 LTR ERV1 4 145 -524 520 336 76 10 chr6 51005718 51006007 -131409235 + MER90 LTR ERV1 301 608 -6 231 36 0 0 chr6 51006874 51006902 -131408340 + (TCC)n Simple_repeat Simple_repeat 1 28 0 194 340 199 0 chr6 51008666 51008822 -131406420 + MIR SINE MIR 76 262 0 815 275 91 32 chr6 51008880 51009255 -131405987 + MLT1L LTR MaLR 211 607 -8 552 305 5 11 chr6 51009295 51009482 -131405760 + L2 LINE L2 3115 3300 -13 207 69 0 0 chr6 51009482 51009511 -131405731 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 272 303 135 13 chr6 51010354 51010504 -131404738 + MIR SINE MIR 5 172 -36 271 233 209 35 chr6 51010783 51010955 -131404287 + MIR SINE MIR 43 244 -18 1915 172 61 29 chr6 51012813 51013191 -131402051 + MLT1B LTR MaLR 1 390 0 2105 125 7 3 chr6 51013607 51013896 -131401346 + AluSx SINE Alu 1 290 -22 1912 142 20 3 chr6 51014006 51014309 -131400933 - Tigger3(Golem) DNA MER2_type -1 3028 2721 335 241 51 13 chr6 51014307 51014386 -131400856 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 1596 299 54 34 chr6 51015191 51015558 -131399684 + MLT2F LTR ERVL 1 388 -275 1421 233 96 6 chr6 51015558 51015893 -131399349 + MLT1A1 LTR MaLR 1 365 0 1596 299 54 34 chr6 51015893 51016175 -131399067 + MLT2F LTR ERVL 388 663 0 336 271 74 60 chr6 51016770 51016992 -131398250 + LTR33A LTR ERVL 1 211 -312 774 259 86 9 chr6 51017021 51017253 -131397989 + LTR33A LTR ERVL 274 523 0 239 226 97 0 chr6 51018167 51018229 -131397013 + L2 LINE L2 3205 3272 0 362 265 32 10 chr6 51020202 51020321 -131394921 + MIR SINE MIR 2 125 -83 207 315 0 0 chr6 51020536 51020590 -131394652 + GA-rich Low_complexity Low_complexity 2 55 0 403 306 82 0 chr6 51020773 51020920 -131394322 + MIR SINE MIR 53 211 -51 625 52 0 0 chr6 51021237 51021314 -131393928 - MADE1 DNA Mariner -3 77 1 2275 105 3 0 chr6 51021413 51021717 -131393525 + AluSx SINE Alu 1 305 -7 589 214 196 7 chr6 51022012 51022337 -131392905 + L2 LINE L2 2771 3159 -154 250 196 0 0 chr6 51022550 51022601 -131392641 + L2 LINE L2 3263 3313 0 416 323 37 6 chr6 51022874 51023038 -131392204 + MIR SINE MIR 48 216 -46 252 231 197 90 chr6 51023168 51023250 -131391992 - MER112 DNA MER1_type 0 260 188 2278 92 3 13 chr6 51023250 51023553 -131391689 + AluSc SINE Alu 1 300 -9 252 231 197 90 chr6 51023553 51023704 -131391538 - MER112 DNA MER1_type -72 188 2 3554 163 54 35 chr6 51023789 51024438 -131390804 - MER21B LTR ERV1 -22 841 181 728 200 62 0 chr6 51024573 51024718 -131390524 - MER21B LTR ERV1 -709 154 1 307 204 202 7 chr6 51024766 51024918 -131390324 - MIR SINE MIR -64 198 15 1400 225 63 39 chr6 51025917 51026410 -131388832 + MLT1D LTR MaLR 1 505 0 404 295 127 0 chr6 51026654 51026820 -131388422 + MIR SINE MIR 20 206 -56 294 270 22 0 chr6 51028254 51028343 -131386899 - MIR3 SINE MIR -8 200 110 256 250 74 65 chr6 51028503 51028611 -131386631 + L2 LINE L2 3156 3264 -8 212 293 88 27 chr6 51028759 51028906 -131386336 + L3 LINE CR1 1411 1566 -11 1596 145 173 7 chr6 51029704 51029993 -131385249 - MER1B DNA MER1_type 0 337 1 1771 183 100 12 chr6 51030280 51030680 -131384562 + MER63B DNA MER1_type 2 436 0 963 92 70 7 chr6 51030760 51030902 -131384340 - BC200 scRNA scRNA -48 152 2 1308 180 28 28 chr6 51031098 51031354 -131383888 + MER33 DNA MER1_type 3 261 -2324 2007 146 23 0 chr6 51031354 51031656 -131383586 + AluJo SINE Alu 1 309 -3 1308 180 28 28 chr6 51031656 51031721 -131383521 + MER33 DNA MER1_type 260 324 0 3710 200 29 39 chr6 51032145 51033499 -131381743 + L1ME1 LINE L1 4824 6161 -5 411 308 159 6 chr6 51034577 51034759 -131380483 - L3 LINE CR1 -1 1576 1367 574 199 6 70 chr6 51034759 51034915 -131380327 + L1MC4a LINE L1 5801 5946 -1862 1078 234 16 4 chr6 51035042 51035290 -131379952 - MIR SINE MIR -11 251 1 304 179 0 21 chr6 51035350 51035445 -131379797 + (TTGG)n Simple_repeat Simple_repeat 4 96 0 213 236 270 11 chr6 51035443 51035532 -131379710 - L2 LINE L2 -572 2742 2631 * 790 311 100 24 chr6 51035637 51036106 -131379136 - L3 LINE CR1 -370 1207 703 293 252 106 4 chr6 51036087 51036234 -131379008 - MIR SINE MIR -63 145 26 * 306 226 0 0 chr6 51038980 51039086 -131376156 + GA-rich Low_complexity Low_complexity 2 107 0 248 285 161 15 chr6 51039130 51039533 -131375709 - L1M4 LINE L1 -2660 3486 3025 302 309 116 6 chr6 51039654 51039788 -131375454 - MIR SINE MIR -63 145 37 195 211 0 0 chr6 51039870 51039908 -131375334 + MIR SINE MIR 111 148 -114 2400 79 3 9 chr6 51039919 51040234 -131375008 + AluSp SINE Alu 1 313 0 1524 217 67 36 chr6 51040717 51040809 -131374433 - L1M4 LINE L1 -2630 4327 4239 2019 119 10 26 chr6 51040809 51041119 -131374123 + AluSq SINE Alu 3 307 -6 1524 217 67 36 chr6 51041119 51041532 -131373710 - L1M4 LINE L1 -2718 4239 3806 488 223 50 8 chr6 51041551 51041672 -131373570 + L1M4 LINE L1 24 149 -6393 * 2496 222 46 14 chr6 51041667 51041763 -131373479 - L1ME LINE L1 -1498 5459 5368 2770 101 3 14 chr6 51041763 51042131 -131373111 + THE1B LTR MaLR 1 364 0 2496 222 46 14 chr6 51042131 51042664 -131372578 - L1ME LINE L1 -1589 5368 4810 3688 165 14 3 chr6 51042664 51043307 -131371935 + L1MB7 LINE L1 5534 6183 -1 3098 253 56 30 chr6 51043310 51045747 -131369495 - L1ME LINE L1 -3143 3814 1193 272 294 103 49 chr6 51045771 51045975 -131369267 - L1ME LINE L1 -5808 1047 833 557 226 68 50 chr6 51046162 51046407 -131368835 - L1ME LINE L1 -5968 979 11 312 231 106 0 chr6 51046413 51046517 -131368725 - MIR SINE MIR -62 200 86 247 280 211 34 chr6 51046751 51046926 -131368316 - MIR SINE MIR -34 228 23 221 332 115 14 chr6 51046971 51047179 -131368063 + L3b LINE CR1 1102 1330 -253 393 198 57 9 chr6 51049490 51049596 -131365646 + MIR SINE MIR 96 206 -56 248 229 0 0 chr6 51050836 51050897 -131364345 - Charlie2a DNA MER1_type -69 2793 2733 923 181 44 0 chr6 51050925 51051107 -131364135 - Charlie2a DNA MER1_type -1203 1659 1470 205 194 0 0 chr6 51051147 51051183 -131364059 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 2252 99 0 3 chr6 51051282 51051576 -131363666 - AluSg SINE Alu -17 293 1 903 281 30 10 chr6 51051578 51051877 -131363365 - Charlie2a DNA MER1_type -2557 305 1 495 305 48 23 chr6 51053015 51053238 -131362004 + MIR SINE MIR 30 262 0 286 185 27 158 chr6 51053387 51053533 -131361709 + L2 LINE L2 3183 3309 -4 180 97 0 0 chr6 51053775 51053806 -131361436 + (A)n Simple_repeat Simple_repeat 1 31 0 1584 186 103 10 chr6 51056546 51056858 -131358384 + MER58B DNA MER1_type 1 341 0 28 0 0 0 chr6 51057277 51057305 -131357937 + AT_rich Low_complexity Low_complexity 1 28 0 227 233 0 50 chr6 51057318 51057378 -131357864 - L2 LINE L2 -15 3298 3242 214 265 15 15 chr6 51058716 51058784 -131356458 + MER5B DNA MER1_type 32 99 -79 342 104 169 52 chr6 51059884 51059961 -131355281 + MIR SINE MIR 98 183 -79 278 350 51 25 chr6 51060511 51060708 -131354534 + MIR SINE MIR 5 206 -56 1324 241 78 20 chr6 51060720 51061115 -131354127 - MER113 DNA MER1_type? -103 418 1 356 316 26 0 chr6 51061763 51061877 -131353365 - MIR3 SINE MIR -7 201 85 25 31 0 0 chr6 51061980 51062012 -131353230 + AT_rich Low_complexity Low_complexity 1 32 0 190 313 208 14 chr6 51062424 51062568 -131352674 - MIR SINE MIR 0 262 91 226 286 169 19 chr6 51062583 51062737 -131352505 + L1MEd LINE L1 2 178 -5941 228 111 0 0 chr6 51062939 51062975 -131352267 + (A)n Simple_repeat Simple_repeat 1 36 0 688 288 101 37 chr6 51063174 51064084 -131351158 + L1MEd LINE L1 718 1731 -4579 225 94 0 0 chr6 51064461 51064493 -131350749 + L1PBa LINE L1 2866 2897 -3966 21 0 0 0 chr6 51064790 51064811 -131350431 + AT_rich Low_complexity Low_complexity 1 21 0 1801 158 0 101 chr6 51064832 51065217 -131350025 - MER7A DNA MER2_type -2 344 1 354 169 0 0 chr6 51065219 51065284 -131349958 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1349 176 152 4 chr6 51065378 51065634 -131349608 + AluJo SINE Alu 4 297 -15 519 217 107 21 chr6 51066433 51066619 -131348623 + MIR SINE MIR 48 246 -16 21 0 0 0 chr6 51066620 51066641 -131348601 + AT_rich Low_complexity Low_complexity 1 21 0 188 237 0 17 chr6 51067037 51067096 -131348146 + GA-rich Low_complexity Low_complexity 1 58 0 489 224 72 8 chr6 51068207 51068332 -131346910 + MER94 DNA DNA 2 134 0 290 274 137 12 chr6 51068385 51068553 -131346689 - MIR SINE MIR -72 190 2 240 252 114 23 chr6 51069011 51069142 -131346100 - MIR SINE MIR -72 190 48 240 310 39 39 chr6 51070245 51070400 -131344842 - MIR3 SINE MIR -15 193 39 656 216 72 72 chr6 51071517 51071698 -131343544 - MER63A DNA MER1_type -21 189 9 1916 97 4 11 chr6 51071717 51071986 -131343256 + AluSg SINE Alu 44 310 0 231 36 0 0 chr6 51073102 51073130 -131342112 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 350 240 72 32 chr6 51073170 51073295 -131341947 + L1MC4 LINE L1 7601 7730 -312 44 70 0 0 chr6 51073308 51073394 -131341848 + AT_rich Low_complexity Low_complexity 1 86 0 468 146 0 0 chr6 51073424 51073527 -131341715 + (TA)n Simple_repeat Simple_repeat 1 103 0 321 253 132 16 chr6 51073530 51073712 -131341530 + L1MC4 LINE L1 7840 8042 0 1554 179 0 53 chr6 51073735 51074037 -131341205 + AluJo SINE Alu 1 286 -26 410 241 44 32 chr6 51074101 51074259 -131340983 + L2 LINE L2 2749 2908 -406 534 311 86 23 chr6 51074345 51074602 -131340640 + L2 LINE L2 2912 3184 -129 252 0 0 0 chr6 51074666 51074694 -131340548 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 2167 123 0 3 chr6 51074815 51075116 -131340126 + AluSx SINE Alu 1 300 -12 330 356 0 0 chr6 51075193 51075294 -131339948 + MIR SINE MIR 38 138 -124 351 252 150 7 chr6 51075495 51075642 -131339600 + MER3 DNA MER1_type 41 208 -1 250 198 0 123 chr6 51075642 51075685 -131339557 - MER3 DNA MER1_type -161 48 16 632 260 35 25 chr6 51075855 51076055 -131339187 + MIR SINE MIR 44 245 -17 2245 215 98 11 chr6 51076832 51077371 -131337871 + MLT1G LTR MaLR 1 586 -4 182 80 0 0 chr6 51077390 51077415 -131337827 - MIR SINE MIR -150 58 34 1623 168 45 0 chr6 51077615 51077883 -131337359 + AluJo SINE Alu 1 280 -32 23 54 0 0 chr6 51077914 51077951 -131337291 + AT_rich Low_complexity Low_complexity 1 37 0 212 296 114 51 chr6 51078371 51078547 -131336695 - MIR SINE MIR -10 252 66 1388 246 131 30 chr6 51079316 51079820 -131335422 + MLT1H1 LTR MaLR 1 555 0 1240 136 0 0 chr6 51081285 51081462 -131333780 + L1MB5 LINE L1 5992 6168 -6 957 57 57 0 chr6 51084055 51084214 -131331028 + CT-rich Low_complexity Low_complexity 4 171 0 274 287 159 80 chr6 51084321 51084450 -131330792 + L2 LINE L2 2998 3115 -157 2459 93 3 0 chr6 51084450 51084761 -131330481 - AluSx SINE Alu 0 312 1 274 287 159 80 chr6 51084761 51084882 -131330360 + L2 LINE L2 3115 3268 -4 2583 96 48 22 chr6 51085195 51085550 -131329692 + THE1B LTR MaLR 1 364 0 220 323 85 39 chr6 51086162 51086292 -131328950 + MIR3 SINE MIR 9 144 -64 345 268 57 51 chr6 51086403 51086560 -131328682 - MIR3 SINE MIR -9 199 42 211 217 22 0 chr6 51087062 51087108 -131328134 + GA-rich Low_complexity Low_complexity 2 48 0 214 266 0 53 chr6 51087923 51088017 -131327225 - MIR SINE MIR 0 262 174 578 250 164 21 chr6 51088049 51088250 -131326992 + MIR SINE MIR 5 232 -30 938 137 30 4 chr6 51091484 51091963 -131323279 + (CA)n Simple_repeat Simple_repeat 1 491 0 1202 142 28 57 chr6 51093394 51093606 -131321636 + MER20 DNA MER1_type 2 207 -12 229 310 86 17 chr6 51093606 51093722 -131321520 - MIR3 SINE MIR -50 158 35 22 0 0 0 chr6 51093760 51093782 -131321460 + AT_rich Low_complexity Low_complexity 1 22 0 210 118 0 0 chr6 51095766 51095800 -131319442 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr6 51097563 51097584 -131317658 + AT_rich Low_complexity Low_complexity 1 21 0 273 29 0 0 chr6 51100450 51100484 -131314758 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 422 96 151 0 chr6 51100556 51100629 -131314613 + MIR3 SINE MIR 122 205 -3 207 319 14 0 chr6 51106707 51106779 -131308463 + GA-rich Low_complexity Low_complexity 2 74 0 2597 62 0 0 chr6 51110154 51110462 -131304780 - AluY SINE Alu -3 308 1 2615 71 23 17 chr6 51110524 51110877 -131304365 - L1PA13 LINE L1 -2 6161 5807 235 320 137 6 chr6 51111347 51111522 -131303720 - MIR SINE MIR -45 217 20 2443 86 0 0 chr6 51111592 51111896 -131303346 + AluSx SINE Alu 3 306 -6 216 0 0 0 chr6 51112625 51112649 -131302593 + (CA)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr6 51112859 51112879 -131302363 + (A)n Simple_repeat Simple_repeat 1 20 0 412 316 30 6 chr6 51113284 51113452 -131301790 + MIR3 SINE MIR 30 201 -7 234 0 0 0 chr6 51113597 51113623 -131301619 + (A)n Simple_repeat Simple_repeat 1 26 0 2306 96 0 0 chr6 51114020 51114313 -131300929 - AluSc SINE Alu -16 293 1 358 346 33 28 chr6 51114609 51114820 -131300422 + MIR SINE MIR 1 212 -50 352 131 16 0 chr6 51116500 51116561 -131298681 + AluSp/q SINE Alu 240 301 -2 203 295 13 26 chr6 51117168 51117246 -131297996 - L2 LINE L2 -58 3255 3179 225 336 96 0 chr6 51117544 51117669 -131297573 + L2 LINE L2 3167 3303 -10 501 289 232 51 chr6 51117728 51118181 -131297061 + L3 LINE CR1 716 1250 -327 352 282 87 0 chr6 51118661 51118764 -131296478 - L2 LINE L2 -5 3308 3197 2058 120 17 0 chr6 51118811 51119102 -131296140 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr6 51119475 51119498 -131295744 + AT_rich Low_complexity Low_complexity 1 23 0 2005 118 3 14 chr6 51119695 51119984 -131295258 + AluSq SINE Alu 1 286 -27 423 0 0 0 chr6 51119989 51120036 -131295206 + (CA)n Simple_repeat Simple_repeat 2 48 0 2938 144 40 29 chr6 51120056 51120604 -131294638 + L1MC2 LINE L1 5784 6337 -7 194 315 93 46 chr6 51120818 51120926 -131294316 - MIR3 SINE MIR -83 125 13 25 31 0 0 chr6 51122052 51122084 -131293158 + AT_rich Low_complexity Low_complexity 1 32 0 1789 163 21 7 chr6 51122351 51122640 -131292602 + AluJo SINE Alu 1 293 -19 222 165 47 129 chr6 51124119 51124204 -131291038 - MIR SINE MIR 0 262 185 562 269 83 2 chr6 51124374 51124584 -131290658 - MIR SINE MIR 0 262 30 251 250 0 0 chr6 51126383 51126439 -131288803 + GA-rich Low_complexity Low_complexity 2 57 0 21 0 0 0 chr6 51127696 51127717 -131287525 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 51128758 51128789 -131286453 + AT_rich Low_complexity Low_complexity 1 31 0 460 258 107 79 chr6 51128808 51129060 -131286182 + MIR SINE MIR 1 259 -3 22 35 0 0 chr6 51129060 51129089 -131286153 + AT_rich Low_complexity Low_complexity 1 29 0 391 252 46 83 chr6 51130096 51130255 -131284987 + MIR SINE MIR 4 151 -62 436 296 130 22 chr6 51130265 51130488 -131284754 + MIR SINE MIR 3 249 -13 411 216 101 65 chr6 51130629 51130768 -131284474 + MIR SINE MIR 63 206 -56 26 0 0 0 chr6 51130780 51130806 -131284436 + AT_rich Low_complexity Low_complexity 1 26 0 222 170 85 0 chr6 51130887 51130934 -131284308 + L2 LINE L2 3258 3308 -5 22 0 0 0 chr6 51130955 51130977 -131284265 + AT_rich Low_complexity Low_complexity 1 22 0 2363 96 3 0 chr6 51131299 51131611 -131283631 + AluSp SINE Alu 1 313 0 551 243 119 11 chr6 51131756 51131933 -131283309 + MIR SINE MIR 57 252 -10 1588 143 50 50 chr6 51132872 51133172 -131282070 + AluJb SINE Alu 2 301 -11 22 56 0 0 chr6 51133184 51133220 -131282022 + AT_rich Low_complexity Low_complexity 1 36 0 241 189 19 0 chr6 51135127 51135180 -131280062 + (CATA)n Simple_repeat Simple_repeat 1 54 0 370 318 88 0 chr6 51135353 51135501 -131279741 + MIR3 SINE MIR 42 202 -6 358 293 40 137 chr6 51136458 51136809 -131278433 - L2 LINE L2 0 3272 2956 389 391 19 19 chr6 51136860 51137072 -131278170 - L2 LINE L2 -421 2893 2682 332 253 101 20 chr6 51137341 51137440 -131277802 + MER5A DNA MER1_type 78 184 -5 458 198 165 16 chr6 51137718 51137839 -131277403 - L3 LINE CR1 -192 1385 1247 206 236 123 75 chr6 51137899 51138005 -131277237 - L3 LINE CR1 -556 1021 911 877 279 193 26 chr6 51138093 51138743 -131276499 + L3 LINE CR1 383 1195 -382 194 291 103 46 chr6 51139062 51139237 -131276005 + L2 LINE L2 1180 1364 -1950 183 156 0 0 chr6 51139880 51139912 -131275330 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 199 246 82 33 chr6 51141488 51141549 -131273693 + MIR SINE MIR 79 142 -66 611 234 141 44 chr6 51141678 51141905 -131273337 + MIR SINE MIR 12 260 -2 502 355 24 47 chr6 51142027 51142323 -131272919 - L2 LINE L2 -43 3229 2941 25 0 0 0 chr6 51142335 51142360 -131272882 + AT_rich Low_complexity Low_complexity 1 25 0 603 297 137 37 chr6 51142750 51143131 -131272111 + L2 LINE L2 2399 2817 -497 606 291 82 34 chr6 51143185 51143453 -131271789 + L2 LINE L2 3032 3312 -1 211 290 16 0 chr6 51145398 51145460 -131269782 + MIR SINE MIR 60 122 -86 23 0 0 0 chr6 51145905 51145928 -131269314 + AT_rich Low_complexity Low_complexity 1 23 0 183 184 0 0 chr6 51145952 51145990 -131269252 + (TA)n Simple_repeat Simple_repeat 2 39 0 246 32 0 0 chr6 51145998 51146029 -131269213 + (CA)n Simple_repeat Simple_repeat 2 32 0 786 214 11 16 chr6 51146099 51146286 -131268956 - L1PB4 LINE L1 -1 6155 5970 27 29 0 0 chr6 51146514 51146548 -131268694 + AT_rich Low_complexity Low_complexity 1 34 0 210 37 0 0 chr6 51148114 51148141 -131267101 + (A)n Simple_repeat Simple_repeat 1 27 0 319 347 48 60 chr6 51148938 51149186 -131266056 + L3b LINE CR1 1114 1358 -225 182 340 0 0 chr6 51149595 51149648 -131265594 - MIR SINE MIR -68 140 88 198 118 0 0 chr6 51150037 51150071 -131265171 + (CA)n Simple_repeat Simple_repeat 1 34 0 669 227 17 35 chr6 51151056 51151228 -131264014 + MER5B DNA MER1_type 10 178 0 * 1289 300 25 25 chr6 51151228 51151693 -131263549 + L2 LINE L2 2177 2641 -673 814 289 103 15 chr6 51151702 51152041 -131263201 + L2 LINE L2 2945 3313 0 454 225 69 104 chr6 51152329 51152502 -131262740 - MIR3 SINE MIR -23 185 19 22 35 0 0 chr6 51153276 51153305 -131261937 + AT_rich Low_complexity Low_complexity 1 29 0 320 291 47 71 chr6 51153368 51153495 -131261747 - L2 LINE L2 -11 3261 3138 25 75 0 0 chr6 51153781 51153834 -131261408 + AT_rich Low_complexity Low_complexity 1 53 0 319 326 0 0 chr6 51154047 51154133 -131261109 - L1MC4 LINE L1 -1339 6703 6618 2251 98 6 19 chr6 51154258 51154575 -131260667 + AluSp SINE Alu 1 313 0 353 316 127 39 chr6 51155728 51156046 -131259196 + L2 LINE L2 2717 3055 -217 206 336 147 9 chr6 51156221 51156337 -131258905 + L2 LINE L2 3141 3272 0 277 308 63 28 chr6 51157820 51157963 -131257279 - MIR3 SINE MIR -1 207 60 254 82 41 0 chr6 51158594 51158643 -131256599 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 983 90 22 0 chr6 51160688 51160854 -131254388 + AluSg/x SINE Alu 148 316 0 213 206 361 21 chr6 51160894 51160991 -131254251 + MIR SINE MIR 19 148 -60 249 119 0 0 chr6 51161055 51161097 -131254145 + (CA)n Simple_repeat Simple_repeat 1 42 0 353 244 45 114 chr6 51161188 51161364 -131253878 + MIR SINE MIR 35 198 -64 667 328 88 53 chr6 51161581 51162548 -131252694 - L2 LINE L2 -204 3068 2066 1277 108 0 0 chr6 51164581 51164747 -131250495 - AluSg/x SINE Alu -9 303 138 282 234 65 39 chr6 51164804 51164881 -131250361 + L2 LINE L2 3194 3272 0 297 0 0 0 chr6 51165319 51165352 -131249890 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 158 0 0 chr6 51166342 51166380 -131248862 + (CA)n Simple_repeat Simple_repeat 2 39 0 2393 59 23 3 chr6 51167988 51168291 -131246951 + AluY SINE Alu 1 309 -2 354 255 38 125 chr6 51170412 51170596 -131244646 - L2 LINE L2 0 3313 3146 2362 242 46 17 chr6 51170809 51171564 -131243678 + MER20B DNA MER1_type 1 777 -6 2216 118 0 10 chr6 51172144 51172477 -131242765 + AluSx SINE Alu 1 312 0 306 324 112 27 chr6 51172478 51172808 -131242434 - L2 LINE L2 -1244 2070 1713 350 325 66 0 chr6 51173215 51173366 -131241876 + MIR SINE MIR 20 180 -82 2344 85 10 7 chr6 51173389 51173694 -131241548 - AluSq SINE Alu -7 306 1 224 250 54 0 chr6 51176085 51176141 -131239101 + L2 LINE L2 3249 3307 -6 2351 72 7 23 chr6 51177487 51177791 -131237451 + AluSp SINE Alu 1 299 -14 260 306 61 0 chr6 51178915 51179013 -131236229 + MIR SINE MIR 79 182 -80 205 254 18 0 chr6 51179266 51179321 -131235921 + GA-rich Low_complexity Low_complexity 2 57 0 251 311 34 7 chr6 51179579 51179727 -131235515 + L1ME4a LINE L1 5936 6087 -34 2202 119 0 0 chr6 51181637 51181931 -131233311 - AluSx SINE Alu -18 294 1 2556 95 11 27 chr6 51182012 51182382 -131232860 + THE1B LTR MaLR 1 364 0 668 283 126 32 chr6 51182757 51183306 -131231936 + L2 LINE L2 2540 3204 -109 749 225 98 49 chr6 51183306 51183550 -131231692 - MIR SINE MIR -2 260 5 668 283 126 32 chr6 51183550 51183635 -131231607 + L2 LINE L2 3204 3280 -33 1986 133 24 0 chr6 51184264 51184557 -131230685 - AluJb SINE Alu -12 300 1 290 317 79 30 chr6 51184629 51184793 -131230449 - MIR3 SINE MIR -6 202 31 2187 102 0 3 chr6 51185155 51185439 -131229803 - AluSc SINE Alu -26 283 1 2251 105 3 7 chr6 51186307 51186612 -131228630 - AluSc SINE Alu 0 309 6 1333 111 0 0 chr6 51186723 51186895 -131228347 - AluSq SINE Alu -141 172 1 273 109 0 0 chr6 51187026 51187072 -131228170 + (CATA)n Simple_repeat Simple_repeat 3 48 0 22 0 0 0 chr6 51187392 51187414 -131227828 + AT_rich Low_complexity Low_complexity 1 22 0 195 100 0 0 chr6 51189043 51189073 -131226169 + (TG)n Simple_repeat Simple_repeat 2 31 0 1007 266 78 0 chr6 51189964 51190257 -131224985 - L3b LINE CR1 -157 1426 1111 731 264 113 52 chr6 51190967 51191331 -131223911 + L2 LINE L2 2928 3313 0 309 298 112 28 chr6 51192227 51192405 -131222837 + MIR SINE MIR 70 262 0 325 320 62 14 chr6 51192457 51192603 -131222639 - MIR SINE MIR -65 143 30 24 0 0 0 chr6 51195201 51195225 -131220017 + AT_rich Low_complexity Low_complexity 1 24 0 2231 89 0 4 chr6 51196403 51196705 -131218537 + AluSg SINE Alu 1 301 0 1749 123 4 0 chr6 51197577 51197813 -131217429 + AluSx SINE Alu 1 237 -75 21 36 0 0 chr6 51197835 51197863 -131217379 + AT_rich Low_complexity Low_complexity 1 28 0 831 230 87 124 chr6 51198230 51198380 -131216862 + MLT1H1 LTR MaLR 29 183 -372 1946 161 0 13 chr6 51198380 51198690 -131216552 + AluJo SINE Alu 5 310 -2 831 230 87 124 chr6 51198690 51199086 -131216156 + MLT1H1 LTR MaLR 183 553 -2 847 287 18 9 chr6 51200166 51200389 -131214853 - MIR SINE MIR 0 262 38 885 220 67 34 chr6 51200736 51200800 -131214442 + MER58A DNA MER1_type 1 61 -2359 1965 124 103 9 chr6 51200800 51201130 -131214112 + MER46B DNA MER2_type 1 236 0 885 220 67 34 chr6 51201130 51201274 -131213968 + MER58A DNA MER1_type 61 216 -8 411 119 0 0 chr6 51202008 51202075 -131213167 + (CA)n Simple_repeat Simple_repeat 2 68 0 416 365 77 1 chr6 51205244 51205440 -131209802 - MIR SINE MIR -53 209 2 22 35 0 0 chr6 51205475 51205504 -131209738 + AT_rich Low_complexity Low_complexity 1 29 0 2292 112 0 0 chr6 51206069 51206372 -131208870 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr6 51207930 51207952 -131207290 + AT_rich Low_complexity Low_complexity 1 22 0 321 226 24 121 chr6 51211521 51211618 -131203624 + L2 LINE L2 3160 3244 -28 2478 77 0 0 chr6 51211618 51211915 -131203327 - AluSx SINE Alu -15 297 1 321 226 24 121 chr6 51211915 51211941 -131203301 + L2 LINE L2 3244 3271 -1 22 80 0 0 chr6 51214313 51214363 -131200879 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr6 51215578 51215600 -131199642 + AT_rich Low_complexity Low_complexity 1 22 0 212 282 0 59 chr6 51215701 51215786 -131199456 + L2 LINE L2 3224 3303 -10 222 37 0 0 chr6 51215816 51215843 -131199399 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 51216338 51216366 -131198876 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 51218726 51218756 -131196486 + GC_rich Low_complexity Low_complexity 1 30 0 608 160 0 8 chr6 51218924 51219049 -131196193 + (CTG)n Simple_repeat Simple_repeat 3 126 0 219 340 0 20 chr6 51219179 51219279 -131195963 + G-rich Low_complexity Low_complexity 2 99 0 306 270 54 118 chr6 51219294 51219702 -131195540 - L1M2 LINE L1 -5933 916 535 1527 220 72 0 chr6 51223783 51224101 -131191141 + MER58B DNA MER1_type 1 341 0 2303 209 127 60 chr6 51225850 51226569 -131188673 + LTR41 LTR ERVL 1 767 -6 270 0 0 0 chr6 51226942 51226972 -131188270 + (A)n Simple_repeat Simple_repeat 1 30 0 340 235 31 62 chr6 51227112 51227274 -131187968 + MER103 DNA DNA 4 160 -6 579 183 27 70 chr6 51227668 51227854 -131187388 - MER96B DNA MER1_type? -238 179 2 23 33 0 0 chr6 51227917 51227947 -131187295 + AT_rich Low_complexity Low_complexity 1 30 0 2207 109 26 3 chr6 51227997 51228300 -131186942 + AluSg SINE Alu 1 310 0 2133 118 0 19 chr6 51228677 51228992 -131186250 + AluSx SINE Alu 2 310 -2 1793 152 19 44 chr6 51229346 51229661 -131185581 - AluJo SINE Alu -5 307 1 186 413 0 0 chr6 51230823 51230903 -131184339 + L2 LINE L2 2271 2350 -964 242 304 14 0 chr6 51231178 51231247 -131183995 + L2 LINE L2 3203 3272 0 558 350 38 35 chr6 51231262 51231602 -131183640 + L2 LINE L2 2437 2777 -537 513 299 51 7 chr6 51232055 51232251 -131182991 + L1MC/D LINE L1 5483 5685 -507 657 225 189 20 chr6 51233249 51233493 -131181749 + Charlie2 DNA MER1_type 3 287 -2575 523 95 0 0 chr6 51233497 51233571 -131181671 + Alu SINE Alu 234 307 -2 1095 207 44 61 chr6 51233613 51233927 -131181315 + Charlie2 DNA MER1_type 2226 2531 -331 1779 153 0 26 chr6 51233927 51234234 -131181008 + AluJo SINE Alu 1 299 -13 1095 207 44 61 chr6 51234234 51234378 -131180864 + Charlie2 DNA MER1_type 2531 2676 -186 527 141 13 0 chr6 51234386 51234464 -131180778 + AluS SINE Alu 9 87 -225 825 148 82 0 chr6 51234464 51234599 -131180643 + AluSc SINE Alu 140 285 -24 1704 113 42 4 chr6 51235046 51235285 -131179957 + AluSx SINE Alu 26 273 -39 678 257 40 10 chr6 51235667 51235869 -131179373 - MIR SINE MIR -6 256 49 660 246 6 84 chr6 51235874 51235928 -131179314 + MER63A DNA MER1_type 57 114 -1574 2339 86 7 0 chr6 51235928 51236220 -131179022 - AluSq SINE Alu -19 294 1 660 246 6 84 chr6 51236220 51236332 -131178910 + MER63A DNA MER1_type 114 210 0 191 296 61 51 chr6 51236768 51236866 -131178376 + L3b LINE CR1 1484 1582 -1 624 241 50 117 chr6 51237365 51237439 -131177803 + L2 LINE L2 2931 3008 -305 2287 123 0 0 chr6 51237439 51237749 -131177493 - AluSx SINE Alu -2 310 1 624 241 50 117 chr6 51237749 51238076 -131177166 + L2 LINE L2 3008 3305 -8 2525 72 3 0 chr6 51238194 51238501 -131176741 + AluSp SINE Alu 1 308 -5 1760 162 0 21 chr6 51238852 51239142 -131176100 - AluJo SINE Alu -28 284 1 454 294 40 65 chr6 51240111 51240312 -131174930 - MIR SINE MIR -62 200 5 306 292 51 51 chr6 51240658 51240795 -131174447 - L1MC4 LINE L1 -1 8041 7905 1176 124 0 4 chr6 51241489 51241764 -131173478 + (TTCC)n Simple_repeat Simple_repeat 1 274 0 741 167 0 18 chr6 51241866 51242034 -131173208 + CT-rich Low_complexity Low_complexity 3 167 0 348 294 17 8 chr6 51242036 51242079 -131173163 + GA-rich Low_complexity Low_complexity 4 45 -78 2493 74 0 0 chr6 51242079 51242377 -131172865 + AluSg SINE Alu 11 308 -2 348 294 17 8 chr6 51242377 51242452 -131172790 + GA-rich Low_complexity Low_complexity 45 123 0 522 250 136 11 chr6 51242798 51242982 -131172260 + MIR SINE MIR 54 260 -2 562 313 130 13 chr6 51243396 51243626 -131171616 - MIR SINE MIR -1 261 5 3050 170 31 107 chr6 51244014 51244319 -131170923 + L1MB8 LINE L1 5326 5653 -525 2296 73 0 20 chr6 51244319 51244619 -131170623 + AluY SINE Alu 2 295 -16 3050 170 31 107 chr6 51244619 51245025 -131170217 + L1MB8 LINE L1 5653 5956 -222 1594 180 0 0 chr6 51245025 51245275 -131169967 + AluJo SINE Alu 5 254 -58 3050 170 31 107 chr6 51245275 51245469 -131169773 + L1MB8 LINE L1 5956 6163 -15 27 0 0 0 chr6 51245474 51245501 -131169741 + AT_rich Low_complexity Low_complexity 1 27 0 1909 125 14 28 chr6 51245766 51246053 -131169189 + AluSx SINE Alu 6 288 -24 3995 175 58 172 chr6 51246437 51247329 -131167913 + L1MCa LINE L1 20 1013 -5413 2089 166 40 33 chr6 51247329 51247519 -131167723 + MSTB LTR MaLR 1 188 -238 1802 92 78 28 chr6 51247519 51247803 -131167439 + AluSg SINE Alu 1 298 -12 2089 166 40 33 chr6 51247803 51247999 -131167243 + MSTB LTR MaLR 188 393 -33 2206 98 7 0 chr6 51247999 51248295 -131166947 + AluY SINE Alu 1 298 -13 2089 166 40 33 chr6 51248295 51248328 -131166914 + MSTB LTR MaLR 393 424 -2 3995 175 58 172 chr6 51248328 51249032 -131166210 + L1MCa LINE L1 1013 1433 -4993 1712 177 30 16 chr6 51249199 51249504 -131165738 - AluJo SINE Alu -3 309 1 25 31 0 0 chr6 51249504 51249536 -131165706 + AT_rich Low_complexity Low_complexity 1 32 0 1979 108 88 23 chr6 51249838 51250190 -131165052 + THE1C LTR MaLR 1 375 0 2294 173 54 2 chr6 51250191 51250596 -131164646 - MSTB LTR MaLR 0 426 1 211 403 0 14 chr6 51250627 51250699 -131164543 + L2 LINE L2 3121 3191 -81 2023 127 17 0 chr6 51251707 51251998 -131163244 - AluSx SINE Alu -16 296 1 311 278 41 0 chr6 51252362 51252459 -131162783 + MARNA DNA Mariner 363 463 -123 637 205 139 6 chr6 51253150 51253316 -131161926 - MER5A DNA MER1_type -1 188 1 217 293 207 29 chr6 51253791 51253999 -131161243 + L2 LINE L2 1830 2074 -1240 187 243 103 47 chr6 51254063 51254170 -131161072 - L2 LINE L2 -995 2319 2207 355 339 170 34 chr6 51254340 51255009 -131160233 + L2 LINE L2 2217 2976 -338 275 188 203 0 chr6 51255091 51255160 -131160082 - MIR SINE MIR -8 254 172 2397 81 3 0 chr6 51255363 51255658 -131159584 + AluSp SINE Alu 4 299 -14 1802 157 11 0 chr6 51255835 51256109 -131159133 - AluSx SINE Alu -35 277 1 294 295 74 74 chr6 51256535 51256684 -131158558 + L2 LINE L2 3122 3270 -2 1523 186 61 10 chr6 51256724 51257020 -131158222 + AluJo SINE Alu 1 311 -1 23 78 0 0 chr6 51257081 51257132 -131158110 + AT_rich Low_complexity Low_complexity 1 51 0 1848 161 4 0 chr6 51257142 51257422 -131157820 + AluSx SINE Alu 1 281 -31 213 65 0 0 chr6 51257425 51257456 -131157786 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 256 300 225 6 chr6 51257487 51257647 -131157595 - MIR SINE MIR 0 262 68 1815 147 11 18 chr6 51258289 51258574 -131156668 - AluSx SINE Alu -29 283 1 1671 269 103 27 chr6 51258646 51259545 -131155697 + L2 LINE L2 2347 3304 -9 1876 161 0 10 chr6 51259998 51260303 -131154939 + AluJo SINE Alu 1 302 -10 386 290 37 0 chr6 51260393 51260500 -131154742 - MIR3 SINE MIR -7 201 91 2364 89 0 0 chr6 51260852 51261154 -131154088 + AluSg SINE Alu 1 302 -8 2340 67 7 3 chr6 51261845 51262142 -131153100 - AluSc SINE Alu -11 298 1 525 219 123 7 chr6 51264429 51264584 -131150658 + MIR SINE MIR 84 256 -6 342 169 0 0 chr6 51264811 51264876 -131150366 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 283 316 84 42 chr6 51264900 51265115 -131150127 + L3 LINE CR1 1248 1471 -106 866 161 14 60 chr6 51265140 51265357 -131149885 + MER3 DNA MER1_type 3 209 0 776 196 13 19 chr6 51266019 51266177 -131149065 + FRAM SINE Alu 1 157 -9 350 226 29 66 chr6 51266300 51266437 -131148805 - MER94 DNA DNA -2 132 1 2221 108 0 0 chr6 51266514 51266802 -131148440 - AluSq SINE Alu -25 288 1 460 325 19 13 chr6 51267231 51267388 -131147854 + MIR SINE MIR 48 205 -57 278 282 35 86 chr6 51267478 51267686 -131147556 + MIR SINE MIR 9 206 -56 2204 87 3 7 chr6 51267874 51268162 -131147080 + AluSx SINE Alu 1 287 -25 1417 158 37 57 chr6 51268483 51268620 -131146622 + AluJo SINE Alu 1 139 -173 2018 111 39 0 chr6 51268620 51268900 -131146342 + AluSx SINE Alu 1 291 -21 1417 158 37 57 chr6 51268900 51269060 -131146182 + AluJo SINE Alu 139 292 -20 621 248 164 7 chr6 51269384 51269605 -131145637 - MIR SINE MIR -1 261 5 609 236 7 14 chr6 51269719 51269859 -131145383 + MIR3 SINE MIR 16 154 -54 252 261 232 56 chr6 51270213 51270355 -131144887 + MIR SINE MIR 44 210 -52 1802 240 73 15 chr6 51271255 51271789 -131143453 + L2 LINE L2 2291 2855 -459 391 257 170 18 chr6 51271895 51272066 -131143176 + L2 LINE L2 3117 3313 0 23 54 0 0 chr6 51272298 51272335 -131142907 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr6 51272684 51272724 -131142518 + AT_rich Low_complexity Low_complexity 1 40 0 22 88 0 0 chr6 51272870 51272927 -131142315 + AT_rich Low_complexity Low_complexity 1 57 0 180 297 117 45 chr6 51274907 51275018 -131140224 - L2 LINE L2 -785 2529 2411 1082 212 65 13 chr6 51275238 51275469 -131139773 - MIR SINE MIR -1 261 19 683 171 75 80 chr6 51277475 51277599 -131137643 - Charlie1 DNA MER1_type 0 2761 2637 1576 117 0 0 chr6 51277599 51277805 -131137437 - AluSg/x SINE Alu -17 293 88 683 171 75 80 chr6 51277805 51277919 -131137323 - Charlie1 DNA MER1_type -124 2637 2524 280 230 67 89 chr6 51278240 51278375 -131136867 - L1MC5 LINE L1 -81 7880 7749 866 245 57 0 chr6 51278442 51278654 -131136588 + MER58A DNA MER1_type 1 224 0 25 0 0 0 chr6 51278691 51278716 -131136526 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr6 51278730 51278757 -131136485 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr6 51278772 51278795 -131136447 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr6 51279647 51279676 -131135566 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1941 121 0 11 chr6 51279679 51279959 -131135283 - AluSx SINE Alu -35 277 1 31 68 0 0 chr6 51280516 51280575 -131134667 + AT_rich Low_complexity Low_complexity 1 59 0 647 188 26 0 chr6 51280618 51280735 -131134507 - FLAM_A SINE Alu -13 120 1 269 286 0 0 chr6 51280960 51281023 -131134219 + L2 LINE L2 2327 2389 -925 722 256 48 12 chr6 51281365 51281615 -131133627 - MIR SINE MIR -1 261 3 1240 157 25 5 chr6 51281767 51281965 -131133277 - AluJb SINE Alu -110 202 1 25 31 0 0 chr6 51282547 51282579 -131132663 + AT_rich Low_complexity Low_complexity 1 32 0 604 229 202 9 chr6 51282836 51283054 -131132188 + MER46C DNA MER2_type 79 338 0 326 302 0 0 chr6 51283054 51283140 -131132102 + MIR SINE MIR 156 241 -21 547 274 120 0 chr6 51283306 51283481 -131131761 + MER3 DNA MER1_type 14 209 0 1465 163 51 34 chr6 51284101 51284396 -131130846 + AluJo SINE Alu 3 302 -10 2399 68 0 3 chr6 51284422 51284716 -131130526 + AluY SINE Alu 3 295 -16 2220 103 0 23 chr6 51285022 51285332 -131129910 + AluSx SINE Alu 1 303 -9 29 28 0 0 chr6 51285406 51285442 -131129800 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr6 51286433 51286454 -131128788 + (TTAAA)n Simple_repeat Simple_repeat 5 25 0 1594 180 47 0 chr6 51286465 51286743 -131128499 + AluJb SINE Alu 1 291 -21 445 147 0 0 chr6 51286934 51287009 -131128233 - AluJ/FLAM SINE Alu -237 75 1 270 116 0 0 chr6 51287073 51287116 -131128126 + (TG)n Simple_repeat Simple_repeat 2 44 0 286 274 107 55 chr6 51288059 51288460 -131126782 - L1M4 LINE L1 -1112 5034 4613 1581 120 120 57 chr6 51290560 51290877 -131124365 - MER1B DNA MER1_type 0 337 1 205 237 68 17 chr6 51291353 51291412 -131123830 - MER5C DNA MER1_type -250 74 13 543 223 33 16 chr6 51291446 51291567 -131123675 - L2 LINE L2 -1 3312 3190 847 259 5 5 chr6 51292104 51292293 -131122949 - MER5A DNA MER1_type 0 189 1 239 200 80 0 chr6 51292713 51292763 -131122479 - L2 LINE L2 0 3272 3219 188 345 18 0 chr6 51292855 51292910 -131122332 - L2 LINE L2 -225 3047 2992 2113 120 0 26 chr6 51293034 51293342 -131121900 - AluSx SINE Alu -12 300 1 436 280 28 0 chr6 51293427 51293534 -131121708 - MIR SINE MIR -150 112 3 238 246 33 0 chr6 51293666 51293727 -131121515 + (CATA)n Simple_repeat Simple_repeat 2 64 0 216 228 0 139 chr6 51294834 51294862 -131120380 - L2 LINE L2 0 3313 3283 2063 123 17 7 chr6 51294862 51295163 -131120079 + AluSx SINE Alu 1 304 -8 216 228 0 139 chr6 51295163 51295213 -131120029 - L2 LINE L2 -30 3283 3246 195 289 154 51 chr6 51295684 51295840 -131119402 - L2 LINE L2 -230 3042 2871 196 328 0 16 chr6 51296162 51296223 -131119019 - L2 LINE L2 -848 2466 2407 222 231 0 90 chr6 51296553 51296631 -131118611 - MIR SINE MIR -33 229 159 429 324 95 35 chr6 51297801 51298085 -131117157 + L3 LINE CR1 214 514 -1063 872 70 61 0 chr6 51298385 51298499 -131116743 - AluSc SINE Alu -188 121 1 367 206 0 0 chr6 51298499 51298567 -131116675 - MER5A DNA MER1_type -113 76 9 345 271 181 19 chr6 51298634 51298789 -131116453 - MIR SINE MIR -34 228 49 2204 101 3 0 chr6 51299168 51299456 -131115786 + AluSc SINE Alu 1 289 -20 1894 146 4 4 chr6 51301103 51301384 -131113858 + AluJb SINE Alu 1 281 -31 705 244 109 10 chr6 51301664 51301857 -131113385 + MIR SINE MIR 36 247 -15 36 53 0 0 chr6 51301948 51302005 -131113237 + AT_rich Low_complexity Low_complexity 1 57 0 195 250 0 0 chr6 51302452 51302496 -131112746 - MER5B DNA MER1_type -134 44 1 604 212 220 0 chr6 51302798 51302930 -131112312 - MER96 DNA MER1_type? 0 175 15 21 0 0 0 chr6 51302945 51302966 -131112276 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 51304293 51304323 -131110919 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 51305133 51305154 -131110088 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 51307257 51307277 -131107965 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr6 51309359 51309380 -131105862 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 51310110 51310137 -131105105 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr6 51310599 51310622 -131104620 + (CA)n Simple_repeat Simple_repeat 1 23 0 183 80 0 0 chr6 51313547 51313572 -131101670 + (TC)n Simple_repeat Simple_repeat 1 25 0 201 74 0 0 chr6 51316062 51316089 -131099153 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 982 124 0 0 chr6 51317046 51317191 -131098051 + AluSp/q SINE Alu 166 310 -3 489 252 170 6 chr6 51317292 51317451 -131097791 - MER5A DNA MER1_type -1 188 4 309 213 185 37 chr6 51317645 51317753 -131097489 - L2 LINE L2 -1 3271 3148 288 221 12 47 chr6 51317853 51317939 -131097303 + MIR SINE MIR 69 151 -111 358 269 42 36 chr6 51318411 51318578 -131096664 - L1ME4a LINE L1 -75 6046 5879 389 251 43 21 chr6 51318641 51318795 -131096447 - L1ME4a LINE L1 -344 5777 5611 300 284 62 11 chr6 51319038 51319214 -131096028 - LTR33A LTR ERVL -11 512 328 259 262 21 99 chr6 51319416 51319557 -131095685 - LTR33A LTR ERVL -393 130 1 1392 212 51 25 chr6 51319952 51320306 -131094936 - MLT1A1 LTR MaLR -1 364 2 686 241 73 52 chr6 51320370 51320602 -131094640 - MIR SINE MIR -14 248 12 26 30 0 0 chr6 51321145 51321178 -131094064 + AT_rich Low_complexity Low_complexity 1 33 0 42847 34 21 1 chr6 51321185 51327211 -131088031 - L1PA2 LINE L1 -3 6152 2 334 258 82 44 chr6 51328106 51328265 -131086977 - MIR3 SINE MIR -28 180 16 458 262 146 12 chr6 51328470 51328521 -131086721 + MER58C DNA MER1_type 30 73 -2347 2399 75 0 23 chr6 51328521 51328826 -131086416 - AluY SINE Alu -13 298 1 458 262 146 12 chr6 51328826 51328938 -131086304 + MER58C DNA MER1_type 73 215 0 2243 101 0 0 chr6 51330459 51330747 -131084495 + AluSg SINE Alu 20 307 -3 237 258 194 0 chr6 51331201 51331294 -131083948 - MIR3 SINE MIR -9 199 89 4362 156 36 44 chr6 51331931 51332073 -131083169 + L1MB3 LINE L1 5182 5324 -859 2265 105 0 13 chr6 51332073 51332377 -131082865 + AluY SINE Alu 1 300 -11 4362 156 36 44 chr6 51332377 51332677 -131082565 + L1MB3 LINE L1 5324 5625 -558 565 101 0 0 chr6 51332677 51332756 -131082486 - MADE1 DNA Mariner -1 79 1 4362 156 36 44 chr6 51332756 51333326 -131081916 + L1MB3 LINE L1 5625 6181 -2 23 0 0 0 chr6 51333423 51333446 -131081796 + AT_rich Low_complexity Low_complexity 1 23 0 707 293 179 19 chr6 51333600 51333975 -131081267 + MLT1H LTR MaLR 12 446 -103 828 269 156 27 chr6 51334143 51334548 -131080694 + MLT1J LTR MaLR 11 467 -44 2052 130 7 0 chr6 51334592 51334893 -131080349 - AluSp SINE Alu -10 303 1 239 284 37 16 chr6 51335118 51335209 -131080033 - MIR SINE MIR -58 150 61 519 245 141 12 chr6 51335605 51335768 -131079474 + MER91A DNA MER1_type 13 196 0 605 265 153 23 chr6 51335992 51336207 -131079035 - MIR SINE MIR 0 262 20 564 306 98 20 chr6 51336297 51336594 -131078648 + MLT1J2 LTR MaLR 67 386 -64 502 357 12 6 chr6 51336698 51336866 -131078376 - MIR SINE MIR -75 187 19 349 299 45 19 chr6 51337420 51337577 -131077665 - MIR SINE MIR -59 203 43 394 256 12 0 chr6 51338250 51338336 -131076906 - L2 LINE L2 0 3272 3186 1050 302 13 13 chr6 51340134 51340511 -131074731 + L1ME1 LINE L1 5784 6160 -6 665 241 113 61 chr6 51340537 51340953 -131074289 + L1ME4a LINE L1 5607 6053 -68 1393 199 41 24 chr6 51340953 51341244 -131073998 - AluJo SINE Alu -14 298 3 665 241 113 61 chr6 51341244 51341316 -131073926 + L1ME4a LINE L1 6053 6120 -1 1277 73 0 6 chr6 51341365 51341544 -131073698 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 267 31 0 0 chr6 51341544 51341576 -131073666 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 331 319 78 7 chr6 51343094 51343235 -131072007 - L2 LINE L2 0 3272 3122 436 263 38 31 chr6 51343495 51343655 -131071587 - L2 LINE L2 0 3313 3153 3939 184 94 20 chr6 51343659 51344591 -131070651 - Charlie1 DNA MER1_type 0 2761 1761 1295 93 0 65 chr6 51344591 51344676 -131070566 + L1PB1 LINE L1 5950 6039 -112 2301 76 3 16 chr6 51344676 51344979 -131070263 + AluY SINE Alu 1 299 -12 1295 93 0 65 chr6 51344979 51345108 -131070134 + L1PB1 LINE L1 6039 6150 -1 550 229 131 37 chr6 51345121 51345449 -131069793 + L1MEd LINE L1 833 1191 -4928 1403 109 5 55 chr6 51345600 51345843 -131069399 - AluSx SINE Alu 0 307 76 7487 36 5 0 chr6 51345856 51346807 -131068435 - L1PA4 LINE L1 -3 6152 5198 11070 26 2 0 chr6 51346809 51348100 -131067142 + L1PA4 LINE L1 3896 5189 -957 671 121 0 0 chr6 51348100 51348191 -131067051 - AluSx SINE Alu -220 92 2 350 294 73 7 chr6 51348233 51348369 -131066873 + MIR SINE MIR 47 191 -71 587 199 110 7 chr6 51348393 51348529 -131066713 - Charlie1 DNA MER1_type -985 1776 1627 871 282 39 10 chr6 51348667 51349090 -131066152 - L2 LINE L2 -170 3143 2713 264 220 0 110 chr6 51349251 51349342 -131065900 - MLT1J2 LTR MaLR -9 441 361 200 277 116 80 chr6 51349763 51349875 -131065367 + MER5A DNA MER1_type 20 135 -54 2117 131 7 0 chr6 51350210 51350515 -131064727 + AluSx SINE Alu 1 307 -5 181 259 56 77 chr6 51351729 51351806 -131063436 + MER5A DNA MER1_type 44 118 -71 3147 174 168 29 chr6 51351806 51352531 -131062711 + LTR1B LTR ERV1 1 826 0 181 259 56 77 chr6 51352531 51352596 -131062646 + MER5A DNA MER1_type 118 183 -6 536 310 92 34 chr6 51352675 51353140 -131062102 + L1ME4a LINE L1 5577 6068 -53 221 211 19 0 chr6 51353158 51353210 -131062032 + (TA)n Simple_repeat Simple_repeat 2 54 0 2369 92 3 0 chr6 51353787 51354080 -131061162 + AluSp SINE Alu 1 294 -19 691 191 124 22 chr6 51354478 51354656 -131060586 - MER3 DNA MER1_type 0 209 14 347 191 181 0 chr6 51354829 51354923 -131060319 - L2 LINE L2 0 3313 3203 214 273 30 30 chr6 51355300 51355366 -131059876 + MIR SINE MIR 59 124 -138 421 324 4 71 chr6 51355866 51356091 -131059151 + MIR SINE MIR 3 212 -50 564 221 87 7 chr6 51356108 51356257 -131058985 - MLT1J1 LTR MaLR 0 446 286 561 303 100 8 chr6 51356303 51356544 -131058698 - MLT1J2 LTR MaLR -124 326 64 308 125 0 0 chr6 51356790 51356838 -131058404 - L1PA5 LINE L1 0 6154 6107 253 305 14 92 chr6 51356911 51357052 -131058190 - L2 LINE L2 -1 3312 3183 286 311 0 48 chr6 51357742 51357901 -131057341 - MIR SINE MIR -65 143 21 888 238 114 28 chr6 51359369 51359911 -131055331 - L2 LINE L2 -19 3294 2692 463 266 131 65 chr6 51360219 51360850 -131054392 - L2 LINE L2 -12 3301 2613 2296 95 3 7 chr6 51361304 51361609 -131053633 + AluSq SINE Alu 1 304 -9 698 243 27 38 chr6 51363048 51363233 -131052009 + MIR SINE MIR 19 201 -61 1879 163 7 3 chr6 51363824 51364130 -131051112 - AluSx SINE Alu -5 307 1 634 278 42 66 chr6 51364903 51364962 -131050280 - MIR SINE MIR -1 261 202 2305 103 0 0 chr6 51364962 51365254 -131049988 - AluSx SINE Alu -20 292 1 634 278 42 66 chr6 51365254 51365435 -131049807 - MIR SINE MIR -60 202 27 269 279 39 10 chr6 51367000 51367104 -131048138 - MIR SINE MIR -83 125 19 1208 163 10 0 chr6 51367428 51367630 -131047612 + MER3 DNA MER1_type 6 209 0 237 341 87 7 chr6 51367746 51367884 -131047358 + MIR3 SINE MIR 2 150 -58 228 374 34 14 chr6 51368833 51368980 -131046262 - MIR SINE MIR -66 196 47 243 228 20 69 chr6 51369229 51369330 -131045912 - MIR SINE MIR -70 192 97 180 308 0 0 chr6 51369858 51369910 -131045332 - MIR SINE MIR -6 256 205 238 343 0 0 chr6 51371541 51371646 -131043596 - MIR SINE MIR -39 223 119 234 169 34 51 chr6 51372050 51372109 -131043133 - MARNA DNA Mariner -206 380 323 421 325 84 11 chr6 51372163 51372354 -131042888 - MARNA DNA Mariner -358 228 24 1316 280 56 75 chr6 51372474 51372814 -131042428 + L2 LINE L2 2393 2738 -575 1796 171 29 108 chr6 51372814 51373359 -131041883 + MLT1D LTR MaLR 2 503 -2 1316 280 56 75 chr6 51373359 51373826 -131041416 + L2 LINE L2 2738 3185 -128 2077 125 10 7 chr6 51373826 51374123 -131041119 + AluSx SINE Alu 1 298 -14 1316 280 56 75 chr6 51374123 51374249 -131040993 + L2 LINE L2 3185 3312 -1 258 258 91 23 chr6 51374506 51374638 -131040604 + MIR3 SINE MIR 45 185 -23 756 253 112 36 chr6 51375070 51375142 -131040100 + L1ME3A LINE L1 5566 5631 -539 1613 161 23 72 chr6 51375142 51375316 -131039926 + MLT1A2 LTR MaLR 1 182 -192 2256 115 0 3 chr6 51375316 51375620 -131039622 + AluSg SINE Alu 1 303 -7 1613 161 23 72 chr6 51375620 51375835 -131039407 + MLT1A2 LTR MaLR 182 371 -3 756 253 112 36 chr6 51375835 51375955 -131039287 + L1ME3A LINE L1 5631 5740 -430 218 95 24 0 chr6 51375955 51375997 -131039245 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 756 253 112 36 chr6 51375997 51376080 -131039162 + L1ME3A LINE L1 5740 5863 -307 183 323 50 20 chr6 51376463 51376562 -131038680 + MIR SINE MIR 19 120 -142 349 227 118 9 chr6 51377087 51377197 -131038045 + L1M4 LINE L1 2785 2906 -3240 2442 100 0 0 chr6 51377235 51377545 -131037697 + AluSg SINE Alu 1 310 0 2224 102 3 7 chr6 51378786 51379080 -131036162 + AluSx SINE Alu 1 293 -19 394 317 49 6 chr6 51381163 51381327 -131033915 - MIR SINE MIR -72 190 20 216 305 105 0 chr6 51382284 51382379 -131032863 - L2 LINE L2 -11 3261 3157 557 269 104 0 chr6 51382655 51382837 -131032405 - MIR SINE MIR -44 218 18 197 304 49 29 chr6 51383108 51383210 -131032032 - MIR SINE MIR -68 140 37 358 324 93 0 chr6 51383769 51383908 -131031334 + MIR SINE MIR 1 152 -110 249 313 12 0 chr6 51384010 51384093 -131031149 + (CAT)n Simple_repeat Simple_repeat 3 86 0 325 175 0 0 chr6 51384130 51384187 -131031055 - MIR SINE MIR -31 231 175 584 258 68 0 chr6 51385264 51385427 -131029815 - MIR SINE MIR -69 193 20 22 0 0 0 chr6 51385427 51385449 -131029793 + AT_rich Low_complexity Low_complexity 1 22 0 3460 82 0 0 chr6 51385449 51385901 -131029341 - L1PA14 LINE L1 -3 6158 5707 277 252 14 101 chr6 51385997 51386136 -131029106 + MIR SINE MIR 61 187 -75 239 370 0 12 chr6 51386757 51386838 -131028404 - L3 LINE CR1 -1 1576 1497 258 288 36 72 chr6 51386907 51387018 -131028224 + MIR SINE MIR 34 140 -122 53 0 0 0 chr6 51387178 51387231 -131028011 + AT_rich Low_complexity Low_complexity 1 53 0 388 194 97 10 chr6 51387242 51387345 -131027897 + MIR SINE MIR 151 262 0 1318 273 88 38 chr6 51387424 51387904 -131027338 - MLT1J LTR MaLR -2 509 6 2401 87 3 3 chr6 51390402 51390711 -131024531 + AluY SINE Alu 1 311 0 276 290 100 20 chr6 51390878 51390978 -131024264 - MIR SINE MIR -84 124 17 386 297 136 0 chr6 51391002 51391157 -131024085 - MIR3 SINE MIR -30 178 3 1545 171 95 15 chr6 51391218 51391492 -131023750 + AluJo SINE Alu 2 297 -5 235 179 0 0 chr6 51391705 51391744 -131023498 - MER5B DNA MER1_type -139 39 1 434 221 25 68 chr6 51393017 51393180 -131022062 + L2 LINE L2 3158 3313 0 242 289 144 0 chr6 51393183 51393287 -131021955 - MIR SINE MIR -21 241 123 360 284 0 0 chr6 51394924 51395005 -131020237 + L2 LINE L2 3183 3263 -50 423 224 105 0 chr6 51395034 51395177 -131020065 + LTR33 LTR ERVL 1 158 -363 276 135 52 167 chr6 51395285 51395381 -131019861 + LTR33 LTR ERVL 434 518 -3 205 245 0 38 chr6 51395664 51395717 -131019525 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 322 232 40 80 chr6 51395829 51395954 -131019288 + MER117 DNA MER1_type 77 196 -1 248 231 0 77 chr6 51396697 51396775 -131018467 - MIR SINE MIR 0 262 191 1025 219 19 10 chr6 51396785 51396990 -131018252 - MER58A DNA MER1_type -1 223 17 2051 174 20 101 chr6 51396991 51397446 -131017796 + MER47B DNA MER2_type 1 418 0 234 305 23 10 chr6 51397461 51397599 -131017643 - MIR SINE MIR -54 208 34 1089 69 0 35 chr6 51397599 51397778 -131017464 - AluY SINE Alu 0 311 150 196 353 112 0 chr6 51398167 51398283 -131016959 + MIR SINE MIR 52 180 -82 375 267 9 38 chr6 51398684 51398789 -131016453 - L2 LINE L2 -16 3256 3155 1987 248 114 9 chr6 51399636 51400169 -131015073 - MLT1E LTR MaLR -4 589 1 41 72 0 0 chr6 51400695 51400778 -131014464 + AT_rich Low_complexity Low_complexity 1 83 0 277 302 112 35 chr6 51400781 51400897 -131014345 - MLT1I LTR MaLR -59 350 226 664 99 0 20 chr6 51400915 51401016 -131014226 - L1MA1 LINE L1 -1 6301 6203 360 178 136 46 chr6 51401198 51401418 -131013824 - Charlie2a DNA MER1_type -83 2779 1485 331 274 25 0 chr6 51401502 51401611 -131013631 - Charlie2b DNA MER1_type -2133 649 555 * 764 270 87 14 chr6 51401609 51401898 -131013344 - Charlie2b DNA MER1_type -2551 311 2 5118 182 20 5 chr6 51402005 51402850 -131012392 + MER21B LTR ERV1 1 858 -5 242 282 24 12 chr6 51403333 51403418 -131011824 + T-rich Low_complexity Low_complexity 1 86 0 423 289 12 15 chr6 51403673 51403803 -131011439 - MIR3 SINE MIR -4 204 75 347 286 55 23 chr6 51404108 51404283 -131010959 + MIR SINE MIR 19 206 -56 569 260 65 74 chr6 51404387 51404674 -131010568 + L2 LINE L2 2978 3263 -50 2018 106 65 0 chr6 51404674 51404967 -131010275 - AluSq SINE Alu -1 312 1 569 260 65 74 chr6 51404967 51405018 -131010224 + L2 LINE L2 3263 3313 0 21 0 0 0 chr6 51405293 51405314 -131009928 + AT_rich Low_complexity Low_complexity 1 21 0 1355 56 5 1 chr6 51405317 51405506 -131009736 - L1PA8 LINE L1 -61 6108 5921 274 225 42 0 chr6 51405929 51406000 -131009242 + (TTATA)n Simple_repeat Simple_repeat 5 78 0 206 121 0 0 chr6 51407563 51407596 -131007646 + (T)n Simple_repeat Simple_repeat 1 33 0 315 221 15 15 chr6 51407883 51407951 -131007291 + MER91B DNA MER1_type 6 73 -117 351 324 76 27 chr6 51408053 51408238 -131007004 + L2 LINE L2 2871 3064 -208 318 87 0 0 chr6 51408667 51408713 -131006529 + (CA)n Simple_repeat Simple_repeat 2 47 0 290 87 22 0 chr6 51408743 51408789 -131006453 + (TAA)n Simple_repeat Simple_repeat 2 48 0 686 285 47 17 chr6 51408791 51409026 -131006216 - MIR SINE MIR -13 249 8 194 308 19 0 chr6 51409235 51409287 -131005955 - L2 LINE L2 -78 3194 3142 257 148 0 19 chr6 51410261 51410315 -131004927 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 * 322 157 24 0 chr6 51410306 51410389 -131004853 + T-rich Low_complexity Low_complexity 4 88 0 189 0 0 0 chr6 51412306 51412327 -131002915 + (T)n Simple_repeat Simple_repeat 1 21 0 633 210 78 0 chr6 51414286 51414453 -131000789 - MER104 DNA MER2_type 0 180 1 3682 253 79 34 chr6 51414493 51417121 -130998121 + L1MEc LINE L1 775 3533 -2682 326 239 22 22 chr6 51417152 51417244 -130997998 + L1ME LINE L1 3 94 -5976 1224 41 24 6 chr6 51417245 51417343 -130997899 + (TTTC)n Simple_repeat Simple_repeat 1 272 0 1224 41 24 6 chr6 51417343 51417513 -130997729 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 284 329 20 20 chr6 51417699 51417845 -130997397 + L1ME LINE L1 345 490 -5580 * 2776 242 118 44 chr6 51417834 51419498 -130995744 + L1ME LINE L1 383 2150 -3930 220 293 168 55 chr6 51421536 51421897 -130993345 - L2 LINE L2 -226 3087 2634 2461 193 51 32 chr6 51421901 51422099 -130993143 + L1ME2 LINE L1 5370 5563 -599 2546 146 32 0 chr6 51422099 51422476 -130992766 - MLT1B LTR MaLR 0 390 2 2461 193 51 32 chr6 51422476 51422869 -130992373 + L1ME2 LINE L1 5563 5972 -190 555 217 106 50 chr6 51422986 51423184 -130992058 + L1ME2 LINE L1 5944 6152 -12 264 256 11 22 chr6 51423290 51423380 -130991862 + MLT2F LTR ERVL 239 327 -336 309 320 59 20 chr6 51423696 51423849 -130991393 + MIR SINE MIR 8 166 -96 263 333 139 0 chr6 51425352 51425460 -130989782 - L2 LINE L2 -1 3271 3149 243 209 9 133 chr6 51425655 51425760 -130989482 + MER112 DNA MER1_type 73 164 -96 316 265 13 66 chr6 51425852 51426003 -130989239 + L3b LINE CR1 1234 1376 -207 739 295 100 8 chr6 51426374 51426635 -130988607 + L3 LINE CR1 1191 1475 -102 192 313 30 0 chr6 51426635 51426702 -130988540 - L2 LINE L2 -1 3271 3203 242 345 0 12 chr6 51426714 51426798 -130988444 + L3 LINE CR1 1486 1568 -9 204 205 0 0 chr6 51427647 51427686 -130987556 - MIR SINE MIR -7 255 217 336 48 0 0 chr6 51428264 51428306 -130986936 + (CA)n Simple_repeat Simple_repeat 2 43 0 496 250 29 43 chr6 51428474 51428614 -130986628 - MIR3 SINE MIR -51 157 20 192 320 41 49 chr6 51429054 51429176 -130986066 - L2 LINE L2 -9 3263 3143 261 0 0 0 chr6 51430435 51430464 -130984778 + (TG)n Simple_repeat Simple_repeat 1 29 0 525 279 157 5 chr6 51431258 51431462 -130983780 - MIR SINE MIR -26 236 2 478 229 51 51 chr6 51431846 51432003 -130983239 - MARNA DNA Mariner -8 578 422 378 286 186 7 chr6 51432007 51432147 -130983095 - MIR3 SINE MIR -33 175 11 545 246 42 24 chr6 51432160 51432327 -130982915 - MARNA DNA Mariner -172 414 245 25 0 0 0 chr6 51432333 51432358 -130982884 + AT_rich Low_complexity Low_complexity 1 25 0 345 159 0 0 chr6 51433554 51433617 -130981625 + (TA)n Simple_repeat Simple_repeat 1 63 0 1930 129 31 3 chr6 51434209 51434496 -130980746 - AluJb SINE Alu -17 295 1 187 278 167 33 chr6 51435580 51435670 -130979572 - MIR SINE MIR -71 191 90 346 272 0 0 chr6 51435844 51435925 -130979317 + MIR SINE MIR 77 157 -105 25 62 0 16 chr6 51436207 51436241 -130979001 + AT_rich Low_complexity Low_complexity 1 35 -28 222 62 0 0 chr6 51436241 51436273 -130978969 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 25 62 0 16 chr6 51436273 51436302 -130978940 + AT_rich Low_complexity Low_complexity 35 63 0 212 176 59 0 chr6 51436638 51436689 -130978553 + CT-rich Low_complexity Low_complexity 2 55 0 21 0 0 0 chr6 51437616 51437637 -130977605 + AT_rich Low_complexity Low_complexity 1 21 0 763 266 19 23 chr6 51438851 51439065 -130976177 - MIR SINE MIR 0 262 50 1373 174 9 9 chr6 51439248 51439466 -130975776 - MER58A DNA MER1_type -2 222 5 324 304 72 16 chr6 51440508 51440633 -130974609 - MER94 DNA DNA 0 134 3 936 209 43 22 chr6 51442851 51443081 -130972161 + MER106A DNA MER1_type 1 235 -1 4424 237 23 28 chr6 51443965 51444859 -130970383 + L1M4 LINE L1 3809 4697 -1449 2096 111 7 10 chr6 51444859 51445157 -130970085 + AluSg SINE Alu 1 297 -13 4424 237 23 28 chr6 51445157 51445547 -130969695 + L1M4 LINE L1 4697 5087 -1059 603 130 200 0 chr6 51445577 51445692 -130969550 - FLAM_C SINE Alu 0 143 6 635 272 31 90 chr6 51445978 51446368 -130968874 - MLT1J LTR MaLR -141 370 4 522 295 31 84 chr6 51446502 51447106 -130968136 - HAL1 LINE L1 -999 1508 937 243 0 0 0 chr6 51447906 51447933 -130967309 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr6 51448633 51448657 -130966585 + AT_rich Low_complexity Low_complexity 1 24 0 354 43 0 0 chr6 51449883 51449929 -130965313 + L1PA6 LINE L1 6105 6150 -4 240 296 174 17 chr6 51450057 51450229 -130965013 - MIR3 SINE MIR -8 200 2 215 59 0 29 chr6 51450565 51450599 -130964643 + (TC)n Simple_repeat Simple_repeat 2 34 0 246 62 0 0 chr6 51450599 51450631 -130964611 + (CA)n Simple_repeat Simple_repeat 1 32 0 349 222 78 0 chr6 51450651 51450741 -130964501 - MER112 DNA MER1_type -5 255 159 2409 65 0 3 chr6 51451313 51451607 -130963635 - AluY SINE Alu -18 293 1 1297 173 90 7 chr6 51454567 51454857 -130960385 + MER33 DNA MER1_type 1 304 -20 1503 294 94 57 chr6 51454857 51456224 -130959018 + L2 LINE L2 1557 2974 -340 339 299 56 21 chr6 51456499 51456643 -130958599 + L2 LINE L2 3122 3270 -2 328 219 210 17 chr6 51456967 51457086 -130958156 + MIR SINE MIR 47 188 -74 2222 117 42 31 chr6 51457512 51457872 -130957370 - THE1B LTR MaLR 0 364 1 483 300 68 5 chr6 51457980 51458170 -130957072 - L2 LINE L2 -244 3069 2868 1071 299 110 29 chr6 51458215 51458905 -130956337 - L2 LINE L2 -710 2604 1859 188 340 78 0 chr6 51460037 51460140 -130955102 - L2 LINE L2 -2 3270 3160 219 238 99 40 chr6 51460638 51460739 -130954503 + MIR SINE MIR 156 262 0 253 361 33 33 chr6 51461456 51461636 -130953606 + MER5A DNA MER1_type 2 181 -8 474 263 0 18 chr6 51462020 51462134 -130953108 - MER81 DNA DNA -1 113 2 799 299 39 29 chr6 51467217 51467528 -130947714 + L3b LINE CR1 1137 1450 -133 181 186 51 0 chr6 51468071 51468130 -130947112 + CT-rich Low_complexity Low_complexity 3 64 0 625 226 17 4 chr6 51469026 51469265 -130945977 + GA-rich Low_complexity Low_complexity 1 242 0 2233 147 14 8 chr6 51469833 51470194 -130945048 + MLT1A1 LTR MaLR 3 365 0 358 224 0 0 chr6 51471249 51471325 -130943917 - MER116 DNA Mariner -1 79 4 252 0 0 0 chr6 51471830 51471858 -130943384 + (GGA)n Simple_repeat Simple_repeat 3 30 0 968 199 38 24 chr6 51472077 51472288 -130942954 + MER20 DNA MER1_type 6 219 0 570 234 9 0 chr6 51472694 51472801 -130942441 - MER81 DNA DNA -5 109 2 384 239 31 0 chr6 51472854 51472957 -130942285 + L1MD2 LINE L1 6254 7769 -16 189 0 0 0 chr6 51473802 51473823 -130941419 + (T)n Simple_repeat Simple_repeat 1 21 0 347 255 71 50 chr6 51474360 51474501 -130940741 - MER5B DNA MER1_type -33 145 2 227 348 43 0 chr6 51474501 51474616 -130940626 - MIR3 SINE MIR -48 160 41 307 226 16 0 chr6 51474743 51474805 -130940437 + L2 LINE L2 3251 3313 0 775 203 85 38 chr6 51475563 51475775 -130939467 + MER106A DNA MER1_type 15 236 0 196 162 29 132 chr6 51476223 51476291 -130938951 + MIR SINE MIR 119 179 -83 280 214 175 16 chr6 51476467 51476593 -130938649 - MLT1J LTR MaLR -365 146 1 411 21 0 0 chr6 51477084 51477132 -130938110 + (CA)n Simple_repeat Simple_repeat 2 49 0 2317 60 0 7 chr6 51477161 51477471 -130937771 + AluY SINE Alu 1 308 0 203 336 139 0 chr6 51477787 51477924 -130937318 + L2 LINE L2 2909 3064 -208 182 191 0 0 chr6 51478026 51478068 -130937174 + L2 LINE L2 3272 3313 0 390 355 38 0 chr6 51478175 51478358 -130936884 + MIR SINE MIR 73 262 0 2176 95 3 3 chr6 51479092 51479410 -130935832 + AluSx SINE Alu 1 318 0 267 346 115 0 chr6 51479677 51479859 -130935383 - MIR SINE MIR 0 262 60 331 304 76 27 chr6 51479957 51480141 -130935101 + MIR3 SINE MIR 5 197 -11 2524 48 0 0 chr6 51480369 51480662 -130934580 + AluY SINE Alu 1 293 -18 1058 277 117 20 chr6 51481066 51481571 -130933671 - MLT1H1 LTR MaLR -1 554 1 658 258 205 25 chr6 51481696 51482238 -130933004 + L2 LINE L2 2671 3313 0 370 263 45 15 chr6 51482293 51482426 -130932816 - MIR3 SINE MIR -68 140 4 243 125 0 0 chr6 51482741 51482781 -130932461 + (T)n Simple_repeat Simple_repeat 1 40 0 292 315 162 13 chr6 51483068 51483303 -130931939 - L3 LINE CR1 -20 1557 1288 360 0 0 0 chr6 51483432 51483472 -130931770 + (TG)n Simple_repeat Simple_repeat 2 41 0 733 257 34 17 chr6 51483494 51483731 -130931511 + MIR SINE MIR 7 247 -15 1751 179 27 0 chr6 51484380 51484681 -130930561 - AluJb SINE Alu -3 309 1 199 208 21 0 chr6 51484683 51484731 -130930511 - L2 LINE L2 -12 3260 3212 2413 100 3 0 chr6 51484941 51485250 -130929992 - AluSp SINE Alu -3 310 1 340 263 8 68 chr6 51487956 51488069 -130927173 + MIR SINE MIR 111 216 -46 421 204 204 8 chr6 51488069 51488201 -130927041 - MER5A DNA MER1_type 0 189 32 209 276 236 8 chr6 51488095 51488218 -130927024 + MER5A DNA MER1_type 39 189 0 * 189 241 0 19 chr6 51488219 51488273 -130926969 + MIR SINE MIR 210 262 0 234 121 35 52 chr6 51490189 51490247 -130924995 + L2 LINE L2 2985 3041 -231 612 279 27 42 chr6 51490698 51490960 -130924282 - MIR SINE MIR -3 259 2 290 183 17 0 chr6 51491068 51491128 -130924114 + L2 LINE L2 3253 3313 0 279 157 0 0 chr6 51491804 51491855 -130923387 + (TG)n Simple_repeat Simple_repeat 1 51 0 1689 260 81 30 chr6 51492194 51492520 -130922722 + MER69 DNA AcHobo 9 374 -2152 4015 59 34 0 chr6 51492520 51493027 -130922215 - L1PA7 LINE L1 -7 6147 5624 1689 260 81 30 chr6 51493027 51493234 -130922008 + MER69 DNA AcHobo 374 569 -1957 286 255 50 57 chr6 51494028 51494169 -130921073 + MIR3 SINE MIR 66 205 -3 2510 64 0 3 chr6 51494327 51494625 -130920617 - AluY SINE Alu -14 297 1 231 268 0 14 chr6 51495232 51495303 -130919939 + MIR SINE MIR 13 82 -180 208 417 9 9 chr6 51496870 51496985 -130918257 + MIR SINE MIR 16 130 -78 493 224 68 19 chr6 51498171 51498332 -130916910 - MIR3 SINE MIR -6 202 34 229 279 24 0 chr6 51498836 51498904 -130916338 - MIR SINE MIR -46 162 88 18688 31 1 0 chr6 51498934 51501906 -130913336 - L1PA3 LINE L1 -3 6152 3179 210 364 11 0 chr6 51502864 51502952 -130912290 - MIR SINE MIR -78 130 42 273 261 239 0 chr6 51503009 51503097 -130912145 + L2 LINE L2 3163 3271 -1 243 233 27 14 chr6 51503721 51503794 -130911448 + L2 LINE L2 2686 2759 -555 2332 78 0 3 chr6 51504027 51504344 -130910898 + AluY SINE Alu 1 316 0 308 330 40 0 chr6 51505256 51505356 -130909886 + MIR SINE MIR 103 206 -56 807 366 54 16 chr6 51505403 51505960 -130909282 + L3 LINE CR1 180 757 -820 213 216 0 0 chr6 51506804 51506841 -130908401 - MIR SINE MIR -9 253 217 487 323 9 31 chr6 51507130 51507359 -130907883 - MIR SINE MIR -31 231 8 245 226 19 0 chr6 51508188 51508241 -130907001 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 279 183 55 18 chr6 51508245 51508409 -130906833 + (TA)n Simple_repeat Simple_repeat 2 171 0 1436 308 68 12 chr6 51508739 51509314 -130905928 - MLT1L LTR MaLR -8 607 1 212 167 264 0 chr6 51509614 51509686 -130905556 - MIR SINE MIR -5 257 167 280 256 0 39 chr6 51510041 51510119 -130905123 + MIR SINE MIR 113 187 -75 21 36 0 0 chr6 51510157 51510185 -130905057 + AT_rich Low_complexity Low_complexity 1 28 0 418 255 114 34 chr6 51510767 51510916 -130904326 + MER103 DNA DNA 4 164 -2 257 192 0 0 chr6 51510980 51511032 -130904210 - MIR SINE MIR -66 142 91 920 205 11 0 chr6 51511075 51511260 -130903982 - MER5A DNA MER1_type -2 187 1 333 276 29 0 chr6 51513257 51513362 -130901880 - MIR SINE MIR -72 190 83 189 0 0 0 chr6 51513563 51513584 -130901658 + (A)n Simple_repeat Simple_repeat 1 21 0 1284 185 140 11 chr6 51513696 51514053 -130901189 - MER69 DNA AcHobo -110 2416 2014 1815 258 53 48 chr6 51514056 51514602 -130900640 - MER69 DNA AcHobo -658 568 20 832 221 11 22 chr6 51514775 51514956 -130900286 - MER58A DNA MER1_type 0 224 46 228 35 0 0 chr6 51516086 51516115 -130899127 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1682 144 43 0 chr6 51516130 51516386 -130898856 - AluSq SINE Alu -46 267 1 290 244 16 65 chr6 51516628 51516751 -130898491 + MIR SINE MIR 3 119 -143 226 265 0 0 chr6 51517771 51517820 -130897422 + CT-rich Low_complexity Low_complexity 4 52 0 183 80 0 0 chr6 51517823 51517848 -130897394 + (TTCCC)n Simple_repeat Simple_repeat 5 29 0 717 142 11 38 chr6 51517880 51518063 -130897179 + CT-rich Low_complexity Low_complexity 1 178 0 214 133 0 0 chr6 51518063 51518093 -130897149 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 775 128 12 35 chr6 51518093 51518265 -130896977 + CT-rich Low_complexity Low_complexity 3 170 0 264 284 276 0 chr6 51518932 51519066 -130896176 + MER5A DNA MER1_type 12 182 -7 799 262 18 24 chr6 51519139 51519459 -130895783 - LTR37B LTR ERV1 -8 459 111 406 237 65 36 chr6 51519448 51519587 -130895655 - LTR37B LTR ERV1 -270 198 56 * 3966 165 41 39 chr6 51519997 51520785 -130894457 + MER54B LTR ERVL 1 789 -4 208 349 57 9 chr6 51523143 51523249 -130891993 + MIR SINE MIR 1 111 -151 1813 82 0 4 chr6 51523564 51523796 -130891446 + AluSg SINE Alu 35 265 -45 198 0 0 0 chr6 51523796 51523818 -130891424 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 198 254 68 0 chr6 51525232 51525291 -130889951 + L2 LINE L2 3250 3312 -1 1562 255 174 6 chr6 51526087 51526593 -130888649 + MLT1E LTR MaLR 1 591 -2 321 309 81 8 chr6 51527027 51527150 -130888092 - MER5A DNA MER1_type -30 159 28 748 289 37 9 chr6 51527401 51527619 -130887623 - MIR SINE MIR -35 227 4 848 259 47 111 chr6 51527951 51528173 -130887069 + MLT1L LTR MaLR 18 253 -362 1293 208 159 14 chr6 51528173 51528519 -130886723 + MSTD LTR MaLR 1 396 0 848 259 47 111 chr6 51528519 51528718 -130886524 + MLT1L LTR MaLR 253 509 -106 2081 125 0 4 chr6 51528718 51529039 -130886203 - AluSc SINE Alu 0 320 1 848 259 47 111 chr6 51529039 51529138 -130886104 + MLT1L LTR MaLR 509 613 -2 318 322 186 0 chr6 51529240 51529417 -130885825 + MIR SINE MIR 20 229 -33 182 342 97 0 chr6 51529454 51529568 -130885674 - MIR SINE MIR 0 262 138 279 239 14 14 chr6 51530408 51530479 -130884763 - MIR SINE MIR -89 119 49 221 282 28 39 chr6 51530677 51530858 -130884384 + (CATA)n Simple_repeat Simple_repeat 1 179 0 * 231 254 0 16 chr6 51530839 51530902 -130884340 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 220 326 171 17 chr6 51531129 51531304 -130883938 - MIR SINE MIR 0 262 61 24 0 0 0 chr6 51532491 51532515 -130882727 + AT_rich Low_complexity Low_complexity 1 24 0 289 328 82 8 chr6 51535013 51535147 -130880095 - MER103 DNA DNA -20 146 3 197 176 0 0 chr6 51535194 51535228 -130880014 + MIR3 SINE MIR 164 197 -11 318 330 72 69 chr6 51535363 51535712 -130879530 - L2 LINE L2 -5 3267 2918 491 291 35 47 chr6 51535831 51536003 -130879239 - MLT1L LTR MaLR -59 556 387 384 131 45 0 chr6 51536338 51536416 -130878826 - MLT1J LTR MaLR -321 125 43 329 128 0 78 chr6 51536595 51536697 -130878545 + (TCCCC)n Simple_repeat Simple_repeat 5 98 0 * 767 164 23 0 chr6 51536695 51536866 -130878376 + CT-rich Low_complexity Low_complexity 2 176 0 441 270 47 0 chr6 51538991 51539139 -130876103 - MER103 DNA DNA -10 156 2 1681 131 65 0 chr6 51539348 51539623 -130875619 + L1MA5A LINE L1 6005 6297 0 541 75 0 0 chr6 51539790 51539857 -130875385 + U6 snRNA snRNA 1 67 -40 1358 161 124 11 chr6 51539859 51540133 -130875109 + L1MA1 LINE L1 5998 6302 0 198 0 0 0 chr6 51540137 51540159 -130875083 + (A)n Simple_repeat Simple_repeat 1 22 0 2789 166 53 2 chr6 51540508 51541037 -130874205 - LTR38 LTR ERV1 0 556 1 197 160 0 20 chr6 51542239 51542289 -130872953 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 30 45 0 0 chr6 51542289 51542333 -130872909 + AT_rich Low_complexity Low_complexity 1 44 0 199 292 0 15 chr6 51542992 51543057 -130872185 + MIR SINE MIR 97 160 -102 623 119 60 7 chr6 51543091 51543242 -130872000 + CT-rich Low_complexity Low_complexity 2 160 0 2048 130 3 10 chr6 51543247 51543547 -130871695 - AluSq SINE Alu -2 311 14 484 336 71 28 chr6 51546654 51546978 -130868264 + L2 LINE L2 2633 2970 -344 850 243 29 0 chr6 51547025 51547235 -130868007 - L2 LINE L2 -203 3110 2895 2380 145 107 15 chr6 51547759 51548235 -130867007 - L1MB3 LINE L1 -3 6180 5661 238 330 50 20 chr6 51548850 51549002 -130866240 + MIR SINE MIR 6 162 -46 677 188 83 14 chr6 51549042 51549186 -130866056 - MER5B DNA MER1_type -12 166 13 442 268 196 0 chr6 51549301 51549495 -130865747 + MIR SINE MIR 31 262 0 525 247 70 104 chr6 51550188 51550544 -130864698 + L2 LINE L2 2461 2804 -510 1398 225 176 21 chr6 51550551 51550978 -130864264 - MLT1J LTR MaLR -8 503 11 469 269 169 59 chr6 51550995 51551434 -130863808 + L2 LINE L2 2827 3313 0 294 250 15 15 chr6 51551583 51551651 -130863591 + MIR SINE MIR 17 84 -124 752 257 48 0 chr6 51551668 51551874 -130863368 - L2 LINE L2 -757 2557 2342 320 319 62 42 chr6 51552354 51552595 -130862647 - L1MC/D LINE L1 -2212 5596 5351 315 272 87 0 chr6 51553035 51553138 -130862104 + L2 LINE L2 3202 3313 0 245 308 82 38 chr6 51553159 51553318 -130861924 + MIR3 SINE MIR 32 197 -11 * 250 352 11 0 chr6 51553298 51553389 -130861853 + MIR SINE MIR 77 168 -94 450 96 32 43 chr6 51553392 51553486 -130861756 - MER53 DNA DNA -1 188 96 580 231 8 0 chr6 51553593 51553710 -130861532 - L2 LINE L2 -5 3308 3191 717 34 0 0 chr6 51554287 51554375 -130860867 + (TTCTC)n Simple_repeat Simple_repeat 5 92 0 2284 85 3 0 chr6 51554376 51554659 -130860583 - AluSg SINE Alu -26 284 1 1585 189 65 0 chr6 51555068 51555343 -130859899 - AluJb SINE Alu -19 293 1 459 262 53 43 chr6 51556140 51556327 -130858915 - MIR3 SINE MIR -15 193 5 287 330 69 69 chr6 51556536 51556769 -130858473 + L2 LINE L2 3037 3269 -3 21 36 0 0 chr6 51557227 51557255 -130857987 + GC_rich Low_complexity Low_complexity 1 28 0 943 189 0 0 chr6 51558191 51558350 -130856892 - AluJb SINE Alu -17 295 137 379 179 63 11 chr6 51558484 51558579 -130856663 - MER20 DNA MER1_type -87 132 33 1074 79 0 0 chr6 51558765 51558891 -130856351 + AluSq/x SINE Alu 7 132 -180 518 297 35 8 chr6 51611476 51611732 -130803510 + L1ME4a LINE L1 5612 5874 -247 256 275 11 0 chr6 51611788 51611879 -130803363 + L1ME4a LINE L1 5984 6075 -46 1039 199 66 8 chr6 51612083 51612324 -130802918 + MIR SINE MIR 8 262 0 788 199 62 0 chr6 51612418 51612579 -130802663 + MER45A DNA AcHobo 7 177 -1 319 181 12 12 chr6 51612756 51612839 -130802403 + CT-rich Low_complexity Low_complexity 3 85 0 12565 188 19 63 chr6 51612855 51614542 -130800700 - L1PA16 LINE L1 -31 6135 4376 189 0 0 0 chr6 51614542 51614563 -130800679 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 12565 188 19 63 chr6 51614563 51614656 -130800586 - L1PA16 LINE L1 -1790 4376 4280 2430 84 3 0 chr6 51614656 51614953 -130800289 - AluSp SINE Alu -15 298 1 12565 188 19 63 chr6 51614953 51617925 -130797317 - L1PA16 LINE L1 -1886 4280 1596 492 268 57 0 chr6 51618326 51618483 -130796759 - MIR SINE MIR -1 261 96 783 198 212 20 chr6 51618769 51619369 -130795873 + LTR50 LTR ERVL 1 760 -35 215 149 0 21 chr6 51620591 51620638 -130794604 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 346 368 0 0 chr6 51620641 51620758 -130794484 - MIR3 SINE MIR -52 156 40 182 237 0 0 chr6 51621233 51621271 -130793971 - L2 LINE L2 -6 3307 3270 508 318 129 7 chr6 51621429 51621731 -130793511 + L3 LINE CR1 1227 1565 -12 330 303 181 5 chr6 51622052 51622240 -130793002 - MIR SINE MIR -41 221 1 1818 98 0 0 chr6 51622764 51622989 -130792253 + AluSc SINE Alu 3 227 -82 2186 110 0 0 chr6 51623006 51623319 -130791923 - AluSc SINE Alu 0 313 1 335 235 0 87 chr6 51625099 51625214 -130790028 + MER69A DNA AcHobo 5 109 -68 425 305 48 16 chr6 51625252 51625439 -130789803 + MIR SINE MIR 67 259 -3 225 227 144 21 chr6 51626941 51627038 -130788204 - MIR SINE MIR -72 190 82 216 261 0 58 chr6 51630236 51630305 -130784937 + L3 LINE CR1 1489 1553 -24 414 85 0 0 chr6 51630891 51630950 -130784292 + (GA)n Simple_repeat Simple_repeat 2 60 0 180 0 0 0 chr6 51631080 51631100 -130784142 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 697 248 78 0 chr6 51631917 51632123 -130783119 + MIR SINE MIR 17 238 -24 415 299 115 47 chr6 51632897 51633218 -130782024 + MLT1J LTR MaLR 100 442 -69 2369 101 0 0 chr6 51633409 51633706 -130781536 - AluSg SINE Alu -13 297 1 194 220 0 20 chr6 51633727 51633777 -130781465 + L2 LINE L2 3263 3311 -2 345 197 0 0 chr6 51634264 51634335 -130780907 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 2379 80 0 29 chr6 51634335 51634647 -130780595 - AluY SINE Alu -8 303 1 300 300 18 18 chr6 51635261 51635371 -130779871 - L2 LINE L2 -1 3271 3162 197 263 237 0 chr6 51635388 51635464 -130779778 + MER5A DNA MER1_type 4 97 -92 3276 105 71 8 chr6 51635493 51635997 -130779245 + MER34B LTR ERV1 1 536 -29 252 0 0 0 chr6 51636859 51636887 -130778355 + (TG)n Simple_repeat Simple_repeat 2 29 0 207 100 0 0 chr6 51638808 51638838 -130776404 + (CAG)n Simple_repeat Simple_repeat 2 31 0 562 255 7 13 chr6 51638845 51638998 -130776244 - MIR SINE MIR -16 246 95 1610 222 9 20 chr6 51639025 51639368 -130775874 + MER58B DNA MER1_type 3 341 0 530 141 27 141 chr6 51639608 51639746 -130775496 + MER104 DNA Tc2 4 119 -1779 2057 126 3 7 chr6 51639746 51640051 -130775191 - AluSx SINE Alu 0 304 1 530 141 27 141 chr6 51640051 51640096 -130775146 + MER104 DNA Tc2 119 167 -13 187 303 76 59 chr6 51640117 51640200 -130775042 - L3 LINE CR1 -105 1472 1385 2175 117 3 0 chr6 51640200 51640498 -130774744 - AluSc SINE Alu -10 299 1 187 303 76 59 chr6 51640498 51640533 -130774709 - L3 LINE CR1 -192 1385 1352 2338 104 0 0 chr6 51644288 51644596 -130770646 - AluSp SINE Alu -5 308 1 484 233 27 67 chr6 51644642 51644792 -130770450 - MIR SINE MIR -92 170 27 229 243 96 66 chr6 51645384 51645520 -130769722 - MIR SINE MIR -3 259 120 328 242 77 0 chr6 51645529 51645620 -130769622 - MIR SINE MIR -119 143 46 313 269 56 9 chr6 51645649 51645757 -130769485 + L2 LINE L2 3144 3256 -16 209 209 0 0 chr6 51645797 51645840 -130769402 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 1161 175 180 70 chr6 51647078 51647309 -130767933 - MLT1C LTR MaLR -2 465 261 1655 147 114 0 chr6 51647309 51647582 -130767660 - AluSx SINE Alu -8 304 1 1161 175 180 70 chr6 51647582 51647722 -130767520 - MLT1C LTR MaLR -206 261 53 1173 203 0 47 chr6 51647742 51647974 -130767268 - AluJo SINE Alu -22 290 70 880 186 44 20 chr6 51651108 51651312 -130763930 - MIR SINE MIR -17 245 37 1347 194 92 6 chr6 51652223 51652537 -130762705 + MER58B DNA MER1_type 1 341 0 225 0 0 0 chr6 51652641 51652666 -130762576 + (A)n Simple_repeat Simple_repeat 1 25 0 251 302 144 14 chr6 51653269 51653408 -130761834 - MIR SINE MIR -12 250 94 321 282 21 70 chr6 51653453 51653595 -130761647 + MLT1J2 LTR MaLR 72 206 -244 336 239 43 24 chr6 51653629 51653752 -130761490 + MLT1I LTR MaLR 309 438 -12 186 274 0 16 chr6 51653759 51653821 -130761421 - MIR SINE MIR -201 61 1 417 320 29 17 chr6 51654112 51654284 -130760958 - MIR3 SINE MIR -3 205 32 217 266 75 0 chr6 51655478 51655572 -130759670 - MIR SINE MIR -72 136 36 475 279 108 10 chr6 51656075 51656279 -130758963 + MIR SINE MIR 32 255 -7 204 274 0 0 chr6 51658285 51658336 -130756906 + L2 LINE L2 3251 3301 -12 1791 148 0 33 chr6 51658379 51658684 -130756558 + AluJo SINE Alu 10 304 -8 231 36 0 0 chr6 51660208 51660236 -130755006 + (TGG)n Simple_repeat Simple_repeat 3 30 0 474 296 71 31 chr6 51660489 51660685 -130754557 - MIR SINE MIR 0 262 59 2415 104 0 0 chr6 51662085 51662392 -130752850 + AluSg1 SINE Alu 1 307 -2 240 330 23 35 chr6 51662955 51663128 -130752114 + MLT1J LTR MaLR 6 176 -335 233 146 21 21 chr6 51663503 51663551 -130751691 + L2 LINE L2 3258 3305 -8 441 322 50 37 chr6 51663583 51663825 -130751417 - L3 LINE CR1 -1 1576 1332 185 277 0 0 chr6 51663992 51664039 -130751203 - L2 LINE L2 -5 3308 3262 21 57 0 0 chr6 51665319 51665354 -130749888 + AT_rich Low_complexity Low_complexity 1 35 0 660 244 75 19 chr6 51665359 51665572 -130749670 - MIR SINE MIR -29 233 9 1537 193 155 13 chr6 51666081 51666489 -130748753 + MLT1C LTR MaLR 1 505 0 486 0 0 0 chr6 51666514 51666568 -130748674 + (TA)n Simple_repeat Simple_repeat 1 54 0 367 19 39 0 chr6 51667041 51667093 -130748149 + (CATA)n Simple_repeat Simple_repeat 2 55 0 290 268 41 41 chr6 51667123 51667220 -130748022 + MIR SINE MIR 43 139 -69 1255 198 137 6 chr6 51667271 51667600 -130747642 - Charlie1 DNA MER1_type -2 2759 2388 562 143 0 0 chr6 51667606 51667710 -130747532 - AluSg/x SINE Alu 0 305 202 1740 236 116 8 chr6 51667711 51668210 -130747032 - Charlie1a DNA MER1_type -902 553 1 721 229 27 16 chr6 51668392 51668575 -130746667 + LTR41 LTR ERVL 1 185 -588 385 257 18 9 chr6 51669016 51669125 -130746117 + LTR41 LTR ERVL 658 767 -6 418 311 46 13 chr6 51669379 51669530 -130745712 - MIR3 SINE MIR -23 185 30 245 196 43 0 chr6 51670044 51670090 -130745152 - MLT2D LTR ERVL 0 464 417 312 137 0 0 chr6 51670116 51670167 -130745075 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr6 51670208 51670243 -130744999 + AT_rich Low_complexity Low_complexity 1 35 0 245 146 21 0 chr6 51670243 51670291 -130744951 + (TA)n Simple_repeat Simple_repeat 2 50 0 1850 171 73 46 chr6 51670295 51670663 -130744579 - MLT2D LTR ERVL -36 378 1 719 213 100 0 chr6 51671379 51671539 -130743703 + MER45A DNA AcHobo 3 178 0 212 192 0 58 chr6 51671725 51671777 -130743465 + A-rich Low_complexity Low_complexity 2 50 0 1893 245 80 35 chr6 51672380 51672915 -130742327 + MLT1G1 LTR MaLR 21 579 -16 524 216 22 65 chr6 51674395 51674534 -130740708 - MER5B DNA MER1_type -45 133 1 2420 167 21 5 chr6 51675655 51676074 -130739168 - MSTB LTR MaLR 0 426 1 411 328 8 0 chr6 51676962 51677093 -130738149 + MIR3 SINE MIR 40 171 -37 205 333 0 0 chr6 51677190 51677265 -130737977 + L2 LINE L2 3197 3271 -1 208 268 113 14 chr6 51677537 51677608 -130737634 - MIR3 SINE MIR -49 159 82 207 0 0 0 chr6 51677869 51677892 -130737350 + (T)n Simple_repeat Simple_repeat 1 23 0 196 268 61 0 chr6 51678014 51678096 -130737146 + MIR SINE MIR 159 245 -17 332 285 126 13 chr6 51678807 51678958 -130736284 + MIR3 SINE MIR 34 201 -7 21 0 0 0 chr6 51679441 51679462 -130735780 + AT_rich Low_complexity Low_complexity 1 21 0 192 161 25 136 chr6 51680322 51680403 -130734839 + MIR SINE MIR 117 188 -74 526 195 181 7 chr6 51680648 51680797 -130734445 + MER5A DNA MER1_type 9 183 -6 219 36 0 0 chr6 51680953 51680981 -130734261 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 208 135 0 0 chr6 51681556 51681593 -130733649 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 271 264 87 77 chr6 51681683 51681729 -130733513 + L1MC4a LINE L1 5716 5760 -2048 2278 84 25 0 chr6 51681729 51682014 -130733228 + AluSc SINE Alu 1 292 -17 271 264 87 77 chr6 51682014 51682175 -130733067 + L1MC4a LINE L1 5760 5925 -1883 234 0 0 0 chr6 51682570 51682596 -130732646 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 501 17 0 0 chr6 51682595 51682653 -130732589 + (GA)n Simple_repeat Simple_repeat 2 59 0 1059 192 104 62 chr6 51682783 51683091 -130732151 - MER46C DNA MER2_type -16 322 2 444 234 75 9 chr6 51684437 51684544 -130730698 + MER81 DNA DNA 1 114 0 400 40 0 0 chr6 51684614 51684664 -130730578 + MADE1 DNA Mariner 3 52 -28 35 24 0 0 chr6 51685152 51685194 -130730048 + AT_rich Low_complexity Low_complexity 1 42 0 242 288 68 0 chr6 51685916 51685989 -130729253 - L2 LINE L2 0 3313 3236 408 257 128 11 chr6 51686097 51686276 -130728966 + MIR SINE MIR 49 248 -14 619 195 235 0 chr6 51686562 51686711 -130728531 - MER5A DNA MER1_type 0 189 6 2118 115 30 0 chr6 51686747 51687042 -130728200 + AluSq SINE Alu 1 304 -9 288 331 57 45 chr6 51687134 51687291 -130727951 + MIR SINE MIR 25 183 -79 2162 190 12 43 chr6 51687849 51688360 -130726882 - L1P LINE L1 -889 5257 4763 1814 130 3 3 chr6 51688365 51688650 -130726592 + L1PA16 LINE L1 5875 6159 -7 302 230 35 0 chr6 51688687 51688774 -130726468 + L1ME4a LINE L1 5831 5920 -201 1911 166 7 0 chr6 51689034 51689341 -130725901 - AluJb SINE Alu -3 309 1 2062 125 26 3 chr6 51689795 51690098 -130725144 + AluSx SINE Alu 1 310 -2 1985 175 30 3 chr6 51690452 51690790 -130724452 - MER7A DNA MER2_type 0 346 2 596 256 16 16 chr6 51691913 51692104 -130723138 + L2 LINE L2 3118 3308 -5 193 234 16 122 chr6 51692465 51692634 -130722608 + MIR3 SINE MIR 53 161 -47 249 241 107 59 chr6 51693178 51693365 -130721877 - L2 LINE L2 -273 2999 2804 443 268 186 5 chr6 51693593 51693813 -130721429 + LTR33 LTR ERVL 1 260 -261 2631 90 31 6 chr6 51693916 51694271 -130720971 + THE1B LTR MaLR 1 364 0 373 228 0 13 chr6 51694412 51694491 -130720751 + MIR SINE MIR 24 101 -107 1450 204 26 80 chr6 51695601 51695988 -130719254 - MLT1A2 LTR MaLR -1 373 8 2606 195 14 0 chr6 51695995 51696431 -130718811 - MLT1A2-int LTR MaLR 0 1735 1294 747 194 146 6 chr6 51696438 51696603 -130718639 - MLT2B1 LTR ERVL -332 188 1 233 289 0 0 chr6 51696603 51696655 -130718587 - L3 LINE CR1 -28 1549 1498 21 36 0 0 chr6 51698193 51698221 -130717021 + AT_rich Low_complexity Low_complexity 1 28 0 366 271 58 39 chr6 51698906 51699061 -130716181 + MIR SINE MIR 34 191 -71 1932 229 82 64 chr6 51699110 51699692 -130715550 + MLT1E LTR MaLR 1 593 0 182 261 0 22 chr6 51700316 51700362 -130714880 + L2 LINE L2 3224 3268 -4 24 0 0 0 chr6 51700485 51700509 -130714733 + AT_rich Low_complexity Low_complexity 1 24 0 680 198 103 86 chr6 51700743 51700975 -130714267 - MER106B DNA MER1_type 0 1059 1 230 234 0 0 chr6 51700975 51701022 -130714220 + (TG)n Simple_repeat Simple_repeat 1 47 0 533 331 32 32 chr6 51701897 51702145 -130713097 - L3 LINE CR1 -58 1519 1272 3053 88 0 8 chr6 51702316 51702704 -130712538 + L1PA8A LINE L1 5746 6130 -1 685 227 91 0 chr6 51703229 51703405 -130711837 + MIR SINE MIR 71 262 0 3086 74 17 10 chr6 51703806 51704209 -130711033 + L1PA10 LINE L1 5760 6165 -3 230 267 17 0 chr6 51704230 51704290 -130710952 - LTR67 LTR ERVL -8 549 489 3420 15 0 0 chr6 51704306 51704699 -130710543 - L1PA2 LINE L1 -880 5266 4874 8209 20 0 0 chr6 51704699 51705590 -130709652 + L1PA2 LINE L1 5265 6155 0 886 268 0 0 chr6 51706912 51707091 -130708151 + MER58A DNA MER1_type 44 222 -2 422 213 32 21 chr6 51707202 51707296 -130707946 - MIR3 SINE MIR 0 208 114 257 246 36 27 chr6 51707509 51707578 -130707664 + (TATATG)n Simple_repeat Simple_repeat 5 77 -38 2433 135 17 86 chr6 51707578 51707805 -130707437 + Tigger2a DNA MER2_type 1 181 -2527 2862 6 0 16 chr6 51707805 51708122 -130707120 - AluYb8 SINE Alu -6 312 1 2433 135 17 86 chr6 51708122 51708360 -130706882 + Tigger2a DNA MER2_type 181 434 0 257 246 36 27 chr6 51708360 51708400 -130706842 + (TATATG)n Simple_repeat Simple_repeat 77 115 0 2208 98 76 25 chr6 51708592 51708949 -130706293 - THE1C LTR MaLR 0 375 1 298 272 161 22 chr6 51709811 51709991 -130705251 + MIR SINE MIR 57 261 -1 438 301 75 29 chr6 51711049 51711259 -130703983 + MIR SINE MIR 3 227 -35 188 86 29 0 chr6 51711492 51711527 -130703715 + (CAA)n Simple_repeat Simple_repeat 1 36 0 341 304 101 32 chr6 51711762 51711920 -130703322 - MER5A DNA MER1_type 0 189 21 640 294 130 0 chr6 51712343 51712605 -130702637 + MLT1J2 LTR MaLR 4 299 -151 2052 167 39 22 chr6 51713681 51714040 -130701202 + MLT1A1 LTR MaLR 1 365 0 1086 122 0 0 chr6 51714053 51714233 -130701009 + (TA)n Simple_repeat Simple_repeat 1 180 0 2104 118 0 4 chr6 51714236 51714516 -130700726 - AluSg SINE Alu -31 279 1 1995 132 16 3 chr6 51714740 51715044 -130700198 - AluSc SINE Alu -1 308 1 360 216 26 78 chr6 51715440 51715556 -130699686 + MER69A DNA AcHobo 1 110 -67 240 302 32 0 chr6 51715792 51715855 -130699387 + L3b LINE CR1 1517 1581 -2 187 167 100 100 chr6 51715887 51715947 -130699295 - MIR SINE MIR -107 101 42 207 209 0 0 chr6 51715947 51715990 -130699252 + T-rich Low_complexity Low_complexity 1 43 0 608 158 25 17 chr6 51715990 51716110 -130699132 - L1MA4A LINE L1 0 6303 6183 206 210 12 86 chr6 51716597 51716678 -130698564 + L2 LINE L2 3224 3298 -15 430 250 8 25 chr6 51717016 51717136 -130698106 + MER5B DNA MER1_type 1 118 -60 556 288 17 11 chr6 51719463 51719640 -130695602 - MER5B DNA MER1_type 0 178 1 393 299 20 80 chr6 51720081 51720150 -130695092 - MIR SINE MIR -50 212 140 666 231 0 8 chr6 51720150 51720284 -130694958 - MER94 DNA DNA -1 133 1 393 299 20 80 chr6 51720284 51720415 -130694827 - MIR SINE MIR -122 140 24 196 365 31 10 chr6 51720701 51720797 -130694445 + MIR SINE MIR 20 117 -145 511 184 0 34 chr6 51724161 51724308 -130690934 + GA-rich Low_complexity Low_complexity 6 147 0 260 235 24 24 chr6 51724577 51724662 -130690580 + T-rich Low_complexity Low_complexity 5 89 0 1191 224 163 52 chr6 51724667 51725226 -130690016 - L1ME3 LINE L1 -2 6160 5540 731 266 115 14 chr6 51725406 51725624 -130689618 - MIR SINE MIR -21 241 2 627 189 9 0 chr6 51726817 51726923 -130688319 + U6 snRNA snRNA 1 107 0 4551 248 32 46 chr6 51726926 51727477 -130687765 + L1ME1 LINE L1 1860 2417 -3798 2873 13 0 0 chr6 51727477 51727789 -130687453 + AluYb8 SINE Alu 1 312 -6 4551 248 32 46 chr6 51727789 51729117 -130686125 + L1ME1 LINE L1 2417 3687 -2528 3291 224 49 26 chr6 51729125 51730000 -130685242 + L1ME1 LINE L1 5323 6217 -18 231 269 0 0 chr6 51730833 51730885 -130684357 - L2 LINE L2 0 3272 3221 686 279 71 20 chr6 51731295 51731492 -130683750 - MIR SINE MIR 0 262 56 1074 290 65 24 chr6 51732354 51732768 -130682474 + MLT1K LTR MaLR 136 566 -22 297 282 139 48 chr6 51733137 51733346 -130681896 + MIR SINE MIR 5 232 -30 434 275 90 35 chr6 51733390 51733590 -130681652 - MIR SINE MIR -38 224 14 2009 140 187 11 chr6 51733766 51734130 -130681112 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr6 51734273 51734294 -130680948 + AT_rich Low_complexity Low_complexity 1 21 0 441 270 35 9 chr6 51734715 51734830 -130680412 - L2 LINE L2 -1 3271 3154 714 313 60 30 chr6 51735085 51735449 -130679793 - L2 LINE L2 -18 3295 2921 3015 134 16 22 chr6 51736715 51737209 -130678033 - L1MC1 LINE L1 -8 6325 5835 353 241 48 0 chr6 51737210 51737293 -130677949 + L2 LINE L2 3224 3310 -3 471 192 14 89 chr6 51737420 51737566 -130677676 - MIR SINE MIR -71 191 57 336 318 104 80 chr6 51738114 51738624 -130676618 + L2 LINE L2 2231 2752 -562 217 264 28 42 chr6 51739059 51739131 -130676111 + L2 LINE L2 3169 3239 -33 181 246 0 18 chr6 51739160 51739217 -130676025 - L2 LINE L2 0 3313 3258 240 273 185 37 chr6 51739437 51739653 -130675589 + L1ME4a LINE L1 5325 5572 -2236 392 255 137 20 chr6 51739749 51739953 -130675289 + L1ME4a LINE L1 5737 5964 -157 357 213 28 0 chr6 51739953 51740061 -130675181 + (TA)n Simple_repeat Simple_repeat 1 111 0 2178 137 153 5 chr6 51740097 51740470 -130674772 - MSTA LTR MaLR 0 428 1 281 236 109 55 chr6 51740941 51741051 -130674191 + MER5A DNA MER1_type 17 132 -57 * 283 266 106 21 chr6 51740960 51741054 -130674188 - MER5A DNA MER1_type -22 167 66 2443 88 0 0 chr6 51741054 51741359 -130673883 - AluSg SINE Alu -5 305 1 587 245 88 13 chr6 51742226 51742385 -130672857 - MER5B DNA MER1_type 0 178 8 1003 174 0 30 chr6 51742532 51742699 -130672543 + FRAM SINE Alu 5 166 0 360 225 174 36 chr6 51742977 51743115 -130672127 + MIR SINE MIR 75 231 -31 248 372 21 0 chr6 51743197 51743291 -130671951 - MIR SINE MIR -76 132 37 2323 100 0 7 chr6 51743808 51744117 -130671125 - AluSc SINE Alu -2 307 1 185 226 109 109 chr6 51744349 51744379 -130670863 + L2 LINE L2 3136 3165 -107 2479 63 0 3 chr6 51744379 51744682 -130670560 - AluY SINE Alu -9 302 1 185 226 109 109 chr6 51744682 51744788 -130670454 + L2 LINE L2 3164 3272 0 251 266 0 0 chr6 51745455 51745519 -130669723 + (TGAA)n Simple_repeat Simple_repeat 3 66 0 209 267 160 61 chr6 51745692 51745823 -130669419 - MIR SINE MIR -30 232 89 24 0 0 0 chr6 51747557 51747581 -130667661 + AT_rich Low_complexity Low_complexity 1 24 0 208 146 0 55 chr6 51747585 51747640 -130667602 + (TAAAA)n Simple_repeat Simple_repeat 2 53 0 254 280 0 0 chr6 51747885 51747960 -130667282 + L1MC/D LINE L1 5357 5431 -811 500 322 70 9 chr6 51747993 51748220 -130667022 + MIR SINE MIR 1 241 -21 215 222 0 14 chr6 51748240 51748312 -130666930 + (ATGGTG)n Simple_repeat Simple_repeat 2 72 0 428 331 0 22 chr6 51748388 51748566 -130666676 + (TGG)n Simple_repeat Simple_repeat 1 174 0 313 234 5 27 chr6 51748571 51748755 -130666487 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 354 271 167 44 chr6 51748936 51749199 -130666043 + L1MC/D LINE L1 5549 5852 -299 519 300 19 0 chr6 51749798 51749958 -130665284 + MIR SINE MIR 98 260 -2 205 316 0 18 chr6 51750064 51750121 -130665121 + MIR3 SINE MIR 114 169 -39 26 30 0 0 chr6 51750240 51750273 -130664969 + AT_rich Low_complexity Low_complexity 1 33 0 318 288 20 57 chr6 51750831 51750970 -130664272 - MIR SINE MIR -72 136 9 562 335 11 0 chr6 51751255 51751434 -130663808 - MIR SINE MIR -1 261 81 40 49 0 0 chr6 51753795 51753856 -130661386 + AT_rich Low_complexity Low_complexity 1 61 0 214 230 138 58 chr6 51754271 51754358 -130660884 + MIR3 SINE MIR 100 193 -15 4517 238 70 16 chr6 51755016 51756078 -130659164 + MER69B DNA AcHobo 4 1135 -1391 2180 128 0 0 chr6 51756078 51756375 -130658867 - AluSx SINE Alu -15 297 1 4517 238 70 16 chr6 51756375 51756473 -130658769 + MER69B DNA AcHobo 1135 1226 0 182 293 52 17 chr6 51757606 51757664 -130657578 + MIR SINE MIR 3 62 -200 523 203 86 0 chr6 51757918 51758046 -130657196 + MER103 DNA DNA 22 160 -6 294 29 0 0 chr6 51758915 51758950 -130656292 + (TG)n Simple_repeat Simple_repeat 1 35 0 493 195 0 0 chr6 51758991 51759068 -130656174 - FLAM_A SINE Alu -59 83 7 187 299 168 9 chr6 51759231 51759338 -130655904 + L2 LINE L2 3182 3305 -8 424 261 109 14 chr6 51759349 51759487 -130655755 + MIR3 SINE MIR 31 181 -27 326 298 75 25 chr6 51759810 51759971 -130655271 - MIR SINE MIR -60 202 34 404 188 67 81 chr6 51760224 51760373 -130654869 - MER103 DNA DNA -7 159 13 467 245 68 30 chr6 51761012 51761249 -130653993 + HAL1 LINE L1 1017 1262 -1245 1241 235 33 55 chr6 51762622 51762988 -130652254 + MLT1A2 LTR MaLR 4 361 -13 2002 131 0 0 chr6 51763165 51763475 -130651767 - AluSq SINE Alu 0 310 1 1127 59 0 0 chr6 51763475 51763610 -130651632 - AluSq/x SINE Alu -178 135 1 342 252 53 122 chr6 51763785 51763916 -130651326 - MIR SINE MIR -14 248 138 1428 170 18 11 chr6 51763916 51764192 -130651050 + L1MB3 LINE L1 5905 6182 -1 342 252 53 122 chr6 51764192 51764289 -130650953 - MIR SINE MIR -124 138 36 273 251 58 146 chr6 51764422 51764568 -130650674 - MER91A DNA MER1_type -39 157 27 854 223 64 35 chr6 51764568 51764770 -130650472 - MER63A DNA MER1_type -1 209 2 273 251 58 146 chr6 51764770 51764794 -130650448 - MER91A DNA MER1_type -169 27 2 264 296 98 85 chr6 51765048 51765223 -130650019 + L2 LINE L2 2489 2671 -643 2866 90 3 0 chr6 51765223 51765577 -130649665 + THE1A LTR MaLR 1 355 0 264 296 98 85 chr6 51765577 51765718 -130649524 + L2 LINE L2 2671 2809 -505 225 65 0 0 chr6 51766142 51766173 -130649069 + (TG)n Simple_repeat Simple_repeat 2 32 0 181 382 0 0 chr6 51766217 51766272 -130648970 + L2 LINE L2 3229 3283 -30 343 376 49 6 chr6 51766402 51766564 -130648678 - MIR SINE MIR -74 188 20 287 287 35 79 chr6 51767046 51767248 -130647994 + LTR67 LTR ERVL 348 540 -17 310 319 80 7 chr6 51767696 51767861 -130647381 - MIR SINE MIR -61 147 3 1064 184 0 5 chr6 51767920 51768126 -130647116 - L1 LINE L1 -1027 5119 4915 27 0 0 0 chr6 51768126 51768153 -130647089 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr6 51768367 51768391 -130646851 + AT_rich Low_complexity Low_complexity 1 24 0 506 257 66 3 chr6 51768517 51768704 -130646538 - MIR SINE MIR -8 254 4 1960 121 0 11 chr6 51769242 51769563 -130645679 - AluSc SINE Alu 0 318 1 1068 198 56 0 chr6 51770039 51770236 -130645006 + MER3 DNA MER1_type 2 209 0 341 223 48 19 chr6 51771379 51771482 -130643760 + L1ME1 LINE L1 37 142 -6254 2299 255 22 38 chr6 51771500 51772233 -130643009 + L1ME1 LINE L1 263 983 -5413 1001 262 106 7 chr6 51772208 51772613 -130642629 + L1ME1 LINE L1 3398 3842 -2373 * 439 284 22 1 chr6 51772646 51772812 -130642430 + L1ME1 LINE L1 3787 3956 -2259 2990 224 72 27 chr6 51772831 51773998 -130641244 + L1ME1 LINE L1 5011 6228 -7 740 289 87 59 chr6 51774638 51775101 -130640141 - L2 LINE L2 -10 3262 2796 1296 216 90 52 chr6 51775959 51776404 -130638838 + MLT1C LTR MaLR 6 467 0 217 301 145 77 chr6 51776574 51776637 -130638605 - L2 LINE L2 -97 3175 3118 2577 126 23 23 chr6 51776637 51777027 -130638215 + MLT1B LTR MaLR 1 390 0 217 301 145 77 chr6 51777027 51777387 -130637855 - L2 LINE L2 -154 3118 2709 12200 161 19 26 chr6 51777387 51780324 -130634918 + L1PA13 LINE L1 3251 6163 0 217 301 145 77 chr6 51780324 51780421 -130634821 - L2 LINE L2 -563 2709 2620 229 271 45 40 chr6 51782160 51782359 -130632883 - Charlie7 DNA MER1_type -15 2597 2398 307 226 0 0 chr6 51782598 51782660 -130632582 - MER91B DNA MER1_type -127 63 2 182 200 114 0 chr6 51783044 51783079 -130632163 - L2 LINE L2 -17 3255 3217 663 293 80 0 chr6 51783143 51783355 -130631887 - MIR SINE MIR -13 249 21 1651 192 24 0 chr6 51783358 51783475 -130631767 + AluJo SINE Alu 1 114 -198 225 0 0 0 chr6 51783475 51783500 -130631742 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1651 192 24 0 chr6 51783500 51783679 -130631563 + AluJo SINE Alu 114 304 -8 651 260 158 32 chr6 51783932 51784343 -130630899 + L2 LINE L2 2429 2891 -423 2145 200 75 2 chr6 51784368 51784819 -130630423 + MLT1D LTR MaLR 22 505 0 386 222 29 117 chr6 51784823 51784928 -130630314 + L2 LINE L2 3115 3201 -112 1530 105 186 8 chr6 51784928 51785175 -130630067 + AluSc SINE Alu 1 291 -18 386 222 29 117 chr6 51785175 51785240 -130630002 + L2 LINE L2 3201 3270 -43 2226 130 0 0 chr6 51786150 51786451 -130628791 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr6 51787008 51787029 -130628213 + AT_rich Low_complexity Low_complexity 1 21 0 428 329 42 12 chr6 51789756 51789923 -130625319 - MIR3 SINE MIR -21 187 16 441 204 136 140 chr6 51789943 51790178 -130625064 - MER106A DNA MER1_type 0 236 3 977 267 43 67 chr6 51790451 51791094 -130624148 + L2 LINE L2 2695 3309 -4 388 321 15 23 chr6 51791117 51791248 -130623994 + L2 LINE L2 3184 3313 0 26289 41 9 0 chr6 51791308 51794462 -130620780 - L1P LINE L1 -2956 3190 9 306 0 0 0 chr6 51796234 51796268 -130618974 + (TG)n Simple_repeat Simple_repeat 1 34 0 245 242 313 0 chr6 51796556 51796655 -130618587 - L1ME4a LINE L1 -1 6120 5991 328 309 8 40 chr6 51797349 51797475 -130617767 + MIR SINE MIR 30 151 -111 2554 151 16 16 chr6 51798651 51798838 -130616404 - L1MA8 LINE L1 -6 6285 6099 2084 176 25 3 chr6 51798838 51799230 -130616012 + MER57A LTR ERV1 3 403 0 2554 151 16 16 chr6 51799230 51799526 -130615716 - L1MA8 LINE L1 -191 6100 5802 1376 188 12 20 chr6 51799526 51799771 -130615471 + AluJb SINE Alu 1 243 -69 2248 125 8 0 chr6 51799774 51800142 -130615100 - L1MA8 LINE L1 -478 5813 5443 413 316 88 12 chr6 51800167 51800338 -130614904 - MIR SINE MIR -72 190 7 461 250 162 47 chr6 51801398 51801546 -130613696 - MER5A DNA MER1_type -15 174 10 1258 203 18 28 chr6 51801623 51801909 -130613333 + L1ME2 LINE L1 5417 5699 -465 2107 172 78 2 chr6 51801922 51802318 -130612924 - MSTA LTR MaLR 0 428 3 9044 167 36 7 chr6 51802320 51803924 -130611318 - MSTA-int LTR MaLR 0 1651 1 2175 169 78 0 chr6 51803994 51804391 -130610851 - MSTA LTR MaLR 0 428 1 340 268 0 0 chr6 51804392 51804474 -130610768 + L1ME2 LINE L1 5719 5800 -366 745 218 125 0 chr6 51804500 51804716 -130610526 - MLT1F LTR MaLR -123 419 177 1127 211 14 61 chr6 51804798 51805159 -130610083 + L1ME2 LINE L1 5811 6154 -10 238 232 182 0 chr6 51805317 51805416 -130609826 + L1MC4 LINE L1 7925 8041 -1 395 258 26 45 chr6 51806022 51806177 -130609065 - MER5B DNA MER1_type -3 175 24 23 0 0 0 chr6 51807550 51807573 -130607669 + AT_rich Low_complexity Low_complexity 1 23 0 198 91 0 0 chr6 51808335 51808368 -130606874 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 268 300 0 0 chr6 51808408 51808478 -130606764 - MIR SINE MIR -113 149 80 22 56 0 0 chr6 51808720 51808756 -130606486 + AT_rich Low_complexity Low_complexity 1 36 0 1458 120 22 19 chr6 51808792 51809059 -130606183 - LTR49 LTR ERV1 0 595 328 1359 137 33 4 chr6 51809431 51809868 -130605374 - LTR54 LTR ERV1 0 510 1 2963 136 142 2 chr6 51810137 51810687 -130604555 - MER39B LTR ERV1 -23 630 4 213 302 67 47 chr6 51811164 51811265 -130603977 - MIR SINE MIR -65 143 43 2769 126 138 17 chr6 51811340 51811870 -130603372 + LTR49 LTR ERV1 1 594 -1 22068 141 98 113 chr6 51811873 51812988 -130602254 + LTR49-int LTR ERV1 1 1131 -5200 244 310 0 0 chr6 51812988 51813046 -130602196 + tRNA-Glu-GAG tRNA tRNA 18 75 0 22068 141 98 113 chr6 51813046 51814194 -130601048 + LTR49-int LTR ERV1 1131 2295 -4036 2114 116 0 14 chr6 51814194 51814478 -130600764 - AluSc SINE Alu -29 280 1 22068 141 98 113 chr6 51814478 51815826 -130599416 + LTR49-int LTR ERV1 2295 3662 -2669 2208 112 13 0 chr6 51815826 51816129 -130599113 + AluSp SINE Alu 1 307 -6 22068 141 98 113 chr6 51816129 51816441 -130598801 + LTR49-int LTR ERV1 3662 3977 -2354 306 0 0 0 chr6 51816441 51816475 -130598767 + (TG)n Simple_repeat Simple_repeat 1 34 0 22068 141 98 113 chr6 51816475 51816486 -130598756 + LTR49-int LTR ERV1 3977 3987 -2344 2090 116 3 7 chr6 51816486 51816770 -130598472 - AluSq SINE Alu -30 283 1 22068 141 98 113 chr6 51816770 51817471 -130597771 + LTR49-int LTR ERV1 3987 4697 -1634 934 94 16 0 chr6 51817471 51817599 -130597643 + AluSc SINE Alu 2 131 -178 22068 141 98 113 chr6 51817599 51817887 -130597355 + LTR49-int LTR ERV1 4697 4988 -1343 4320 68 37 8 chr6 51817887 51818475 -130596767 + LTR14B LTR ERVK 4 608 0 22068 141 98 113 chr6 51818475 51819786 -130595456 + LTR49-int LTR ERV1 4988 6329 -2 2532 112 25 8 chr6 51819786 51820144 -130595098 + THE1B LTR MaLR 1 364 0 2565 140 65 19 chr6 51820151 51820675 -130594567 + LTR49 LTR ERV1 1 743 -44 332 291 65 95 chr6 51820755 51820847 -130594395 - L2 LINE L2 -341 2973 2880 2122 132 3 0 chr6 51820847 51821143 -130594099 + AluSx SINE Alu 1 297 -15 332 291 65 95 chr6 51821143 51821483 -130593759 - L2 LINE L2 -434 2880 2554 1368 170 35 35 chr6 51821719 51822008 -130593234 + MLT1B LTR MaLR 1 289 -101 246 260 31 10 chr6 51822043 51822139 -130593103 - TAR1 Satellite telomeric -1818 293 196 2818 171 17 24 chr6 51822164 51822754 -130592488 - LTR60 LTR ERV1 0 586 1 597 115 0 10 chr6 51822757 51822853 -130592389 + MLT1B LTR MaLR 296 390 0 495 335 36 31 chr6 51824431 51824655 -130590587 + MIR SINE MIR 17 241 -21 302 330 62 20 chr6 51825330 51825491 -130589751 + MER5A DNA MER1_type 7 186 -3 421 219 159 7 chr6 51825861 51826012 -130589230 + MER104 DNA Tc2 4 177 -3 228 314 59 0 chr6 51826330 51826432 -130588810 + L2 LINE L2 3190 3297 -16 468 202 28 9 chr6 51826451 51826560 -130588682 + MER94 DNA DNA 1 111 -23 226 376 43 26 chr6 51826572 51826689 -130588553 + L2 LINE L2 3134 3252 -20 1551 174 162 35 chr6 51826856 51827287 -130587955 + MLT1D LTR MaLR 15 500 -5 40271 56 2 0 chr6 51827530 51833653 -130581589 + L1PA5 LINE L1 11 6146 -8 22 0 0 0 chr6 51833653 51833675 -130581567 + AT_rich Low_complexity Low_complexity 1 22 0 1055 257 78 108 chr6 51833681 51834091 -130581151 - MLT1K LTR MaLR -47 541 149 462 301 9 0 chr6 51834091 51834204 -130581038 - MER81 DNA DNA 0 114 1 1055 257 78 108 chr6 51834204 51834341 -130580901 - MLT1K LTR MaLR -439 149 10 184 365 47 28 chr6 51834367 51834474 -130580768 + L2 LINE L2 3192 3300 -13 1705 89 19 0 chr6 51835162 51835419 -130579823 - L1MA4A LINE L1 -2 6301 6040 251 204 194 10 chr6 51835808 51835911 -130579331 + MLT1L LTR MaLR 144 265 -350 423 264 16 8 chr6 51836034 51836159 -130579083 + MLT1L LTR MaLR 430 555 -60 464 332 96 0 chr6 51836622 51836809 -130578433 - MIR SINE MIR -31 231 27 274 250 97 0 chr6 51837181 51837253 -130577989 - L2 LINE L2 -60 3253 3175 467 221 101 51 chr6 51838826 51838984 -130576258 - MIR SINE MIR -82 180 15 9876 28 8 0 chr6 51839236 51841186 -130574056 - L1PA3 LINE L1 -5 6150 4190 353 305 84 15 chr6 51842289 51842420 -130572822 - MIR3 SINE MIR -58 150 11 3893 180 53 15 chr6 51842768 51843988 -130571254 - L1MB8 LINE L1 -5 6173 4903 319 219 16 140 chr6 51844921 51845050 -130570192 + MER5A DNA MER1_type 38 161 -28 302 347 177 39 chr6 51846182 51846646 -130568596 + L2 LINE L2 867 1394 -1920 963 241 14 0 chr6 51849921 51850141 -130565101 - MER58A DNA MER1_type -1 223 1 227 254 56 56 chr6 51850227 51850369 -130564873 - L1ME4a LINE L1 -24 6097 5956 415 101 88 0 chr6 51850378 51850537 -130564705 + (TA)n Simple_repeat Simple_repeat 2 174 0 228 217 108 0 chr6 51850614 51850697 -130564545 - L1MC5 LINE L1 -22 7939 7848 22 35 0 0 chr6 51853922 51853951 -130561291 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 51854636 51854659 -130560583 + AT_rich Low_complexity Low_complexity 1 23 0 388 244 6 6 chr6 51855571 51855731 -130559511 + (TATATG)n Simple_repeat Simple_repeat 6 165 0 185 244 134 59 chr6 51855861 51855980 -130559262 + L2 LINE L2 2141 2268 -1046 234 213 49 0 chr6 51856761 51856822 -130558420 - L1P LINE L1 -2449 3697 3634 5684 258 92 21 chr6 51856966 51857128 -130558114 + L1M4 LINE L1 2145 2294 -3852 2679 97 14 0 chr6 51857128 51857498 -130557744 - THE1C LTR MaLR 0 375 1 5684 258 92 21 chr6 51857498 51858725 -130556517 + L1M4 LINE L1 2294 3433 -2713 468 51 0 0 chr6 51858725 51858784 -130556458 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2114 98 0 0 chr6 51858784 51859061 -130556181 - AluSc SINE Alu -32 277 1 5684 258 92 21 chr6 51859061 51860158 -130555084 + L1M4 LINE L1 3432 4808 -1338 801 216 49 11 chr6 51860418 51860603 -130554639 + MLT1A2 LTR MaLR 179 370 -4 245 265 0 0 chr6 51860610 51860659 -130554583 - L1MD2 LINE L1 -289 6330 6282 5296 209 135 46 chr6 51860661 51866336 -130548906 - L1MD2 LINE L1 -282 6220 8 256 286 218 0 chr6 51866657 51866790 -130548452 + MIR3 SINE MIR 24 185 -23 267 31 0 0 chr6 51869235 51869267 -130545975 + (TG)n Simple_repeat Simple_repeat 2 33 0 205 86 29 0 chr6 51870107 51870142 -130545100 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 233 265 0 0 chr6 51870160 51870209 -130545033 - L2 LINE L2 -8 3305 3257 264 189 19 0 chr6 51871236 51871289 -130543953 - MER5A DNA MER1_type -74 115 62 2744 16 0 0 chr6 51871289 51871603 -130543639 - L1PA2 LINE L1 -1 6154 5841 2393 22 0 0 chr6 51871612 51871887 -130543355 - L1PA2 LINE L1 -507 5648 5374 * 4303 25 0 0 chr6 51871883 51872403 -130542839 + L1PA2 LINE L1 4856 5375 -771 454 151 0 0 chr6 51872404 51872477 -130542765 - MER5A DNA MER1_type -116 73 1 2607 48 0 6 chr6 51872801 51873112 -130542130 - AluY SINE Alu -2 309 1 282 209 11 22 chr6 51874266 51874357 -130540885 + CT-rich Low_complexity Low_complexity 3 92 0 1499 181 48 10 chr6 51874365 51874657 -130540585 - AluJo SINE Alu -9 303 1 197 65 32 0 chr6 51876825 51876856 -130538386 + (TA)n Simple_repeat Simple_repeat 2 33 0 2172 116 0 3 chr6 51877464 51877766 -130537476 - AluSx SINE Alu -11 301 1 1478 214 93 19 chr6 51881875 51882305 -130532937 - MLT1C LTR MaLR 0 467 6 2792 231 45 14 chr6 51882368 51883056 -130532186 + L1ME1 LINE L1 5453 6161 -5 1363 115 0 5 chr6 51883342 51883534 -130531708 - AluSg/x SINE Alu 0 312 122 548 71 0 0 chr6 51883534 51883604 -130531638 + AluSg SINE Alu 56 125 -185 991 74 0 0 chr6 51884930 51885074 -130530168 - AluSg/x SINE Alu 0 303 160 399 316 61 36 chr6 51886537 51886733 -130528509 - MIR SINE MIR -1 261 61 682 297 72 10 chr6 51887836 51888142 -130527100 + ERVL LTR ERVL 3799 4123 -1641 1371 310 73 10 chr6 51888352 51888955 -130526287 + ERVL LTR ERVL 4469 5109 -655 395 283 63 53 chr6 51888955 51889255 -130525987 - L1MEd LINE L1 -5040 1079 777 1382 224 32 96 chr6 51889512 51890044 -130525198 - L1M4 LINE L1 -1148 4998 4501 23 0 0 0 chr6 51890336 51890359 -130524883 + AT_rich Low_complexity Low_complexity 1 23 0 331 283 33 0 chr6 51890464 51890584 -130524658 + L1ME4a LINE L1 5779 5902 -219 1614 164 71 45 chr6 51890586 51890922 -130524320 - MER47A DNA MER2_type -2 364 20 1863 156 12 42 chr6 51891168 51891502 -130523740 - MLT2B2 LTR ERVL -191 324 1 351 341 16 8 chr6 51892457 51892583 -130522659 - MIR SINE MIR -32 230 104 299 337 64 0 chr6 51892602 51892789 -130522453 + L1ME LINE L1 5617 5815 -306 289 303 11 22 chr6 51892789 51892878 -130522364 - MIR SINE MIR -160 102 15 186 284 55 47 chr6 51893316 51893443 -130521799 + L2 LINE L2 2985 3112 -160 239 184 20 0 chr6 51894222 51894271 -130520971 + L2 LINE L2 3262 3311 -2 674 171 0 0 chr6 51894320 51894425 -130520817 + FLAM_A SINE Alu 6 110 -32 279 0 0 0 chr6 51894435 51894466 -130520776 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 751 235 49 0 chr6 51894629 51894812 -130520430 - MER58C DNA MER1_type -1 214 23 1305 91 0 0 chr6 51896186 51896351 -130518891 - AluSg/x SINE Alu -13 299 135 2216 84 7 0 chr6 51896366 51896651 -130518591 - AluSx SINE Alu -25 287 1 573 276 0 0 chr6 51897272 51897395 -130517847 - MIR SINE MIR -123 139 17 1114 149 33 19 chr6 51897395 51897609 -130517633 - MER20 DNA MER1_type 0 219 3 695 279 44 20 chr6 51897730 51897981 -130517261 - MIR SINE MIR 0 262 6 291 319 151 8 chr6 51898008 51898127 -130517115 + L2 LINE L2 3137 3272 0 343 295 80 10 chr6 51898683 51898822 -130516420 + MIR SINE MIR 1 151 -57 781 216 31 35 chr6 51900471 51900643 -130514599 - MER112 DNA MER1_type -7 253 81 279 93 0 0 chr6 51900643 51900686 -130514556 + (CA)n Simple_repeat Simple_repeat 2 44 0 781 216 31 35 chr6 51900686 51900740 -130514502 - MER112 DNA MER1_type -179 81 28 722 252 37 72 chr6 51901363 51901521 -130513721 - MER110 LTR ERV1 -33 458 314 2248 86 0 7 chr6 51901521 51901841 -130513401 + AluSg1 SINE Alu 1 318 0 722 252 37 72 chr6 51901841 51902002 -130513240 - MER110 LTR ERV1 -177 314 149 2430 80 0 3 chr6 51902383 51902683 -130512559 - AluY SINE Alu -12 299 1 33 25 0 0 chr6 51902868 51902908 -130512334 + AT_rich Low_complexity Low_complexity 1 40 0 207 0 0 0 chr6 51903608 51903631 -130511611 + (TG)n Simple_repeat Simple_repeat 1 23 0 436 316 138 4 chr6 51904114 51904339 -130510903 - MLT1L LTR MaLR -8 607 353 770 141 41 71 chr6 51904359 51904406 -130510836 + MLT1D LTR MaLR 6 53 -452 2227 111 71 40 chr6 51904406 51904759 -130510483 - THE1B LTR MaLR 0 364 1 11919 89 8 1 chr6 51904759 51906328 -130508914 - THE1B-int LTR MaLR 0 1580 1 2075 123 85 20 chr6 51906328 51906670 -130508572 - THE1B LTR MaLR 0 364 1 770 141 41 71 chr6 51906670 51906790 -130508452 + MLT1D LTR MaLR 50 170 -335 1145 144 0 0 chr6 51906807 51906967 -130508275 - AluSc SINE Alu -20 289 130 815 243 80 19 chr6 51906978 51907272 -130507970 + MLT1D LTR MaLR 161 501 -4 328 149 0 0 chr6 51908577 51908624 -130506618 - Charlie5 DNA MER1_type -2545 67 21 1236 224 34 44 chr6 51908967 51909262 -130505980 + AluJo SINE Alu 3 294 -18 420 336 111 9 chr6 51909666 51909892 -130505350 - MLT1L LTR MaLR 0 615 367 275 182 0 0 chr6 51909980 51910024 -130505218 - LTR67 LTR ERVL -417 140 97 400 307 34 22 chr6 51910115 51910294 -130504948 - MIR SINE MIR -1 261 81 1973 238 47 60 chr6 51910773 51911374 -130503868 + MLT1E LTR MaLR 1 593 0 1292 193 34 95 chr6 51911954 51912191 -130503051 - MLT1B LTR MaLR -3 387 184 2234 119 0 3 chr6 51912191 51912501 -130502741 - AluY SINE Alu -2 309 1 1292 193 34 95 chr6 51912501 51912672 -130502570 - MLT1B LTR MaLR -206 184 4 568 127 0 97 chr6 51912697 51912831 -130502411 + L2 LINE L2 3192 3312 -1 1689 134 51 0 chr6 51915012 51915265 -130499977 + AluJb SINE Alu 28 293 -19 253 284 60 65 chr6 51915953 51916154 -130499088 + MIR SINE MIR 63 262 0 903 283 164 35 chr6 51916794 51917374 -130497868 + HAL1 LINE L1 91 745 -1762 664 283 82 66 chr6 51967575 51968057 -130447185 + L2 LINE L2 2763 3263 -50 394 281 111 29 chr6 51968282 51968453 -130446789 - L1ME3 LINE L1 -2 6160 5976 2166 151 8 11 chr6 51968453 51968823 -130446419 + LTR57 LTR ERVL 1 369 -42 1571 251 54 66 chr6 51968862 51969702 -130445540 - L1ME3 LINE L1 -180 5982 5131 344 353 8 8 chr6 51972859 51972992 -130442250 + MIR SINE MIR 58 190 -72 193 243 279 18 chr6 51973021 51973132 -130442110 + MIR3 SINE MIR 54 193 -15 192 304 0 0 chr6 51973204 51973250 -130441992 + L3b LINE CR1 1528 1573 -10 1726 139 8 8 chr6 51974278 51974544 -130440698 + AluSx SINE Alu 39 304 -8 2417 90 0 10 chr6 51975451 51975762 -130439480 - AluSq SINE Alu -5 308 1 181 337 114 29 chr6 51977221 51977571 -130437671 + L2 LINE L2 2265 2644 -670 261 319 55 11 chr6 51977629 51977720 -130437522 + MIR SINE MIR 65 159 -103 517 257 153 31 chr6 51978572 51978794 -130436448 - MIR SINE MIR -1 261 13 586 261 65 13 chr6 51979204 51979357 -130435885 + MLT1G1 LTR MaLR 2 162 -433 475 92 0 0 chr6 51979380 51979445 -130435797 + Tigger4(Zombi) DNA MER2_type 2666 2730 -1 1516 239 107 10 chr6 51979446 51979840 -130435402 + MLT1G1 LTR MaLR 161 592 -3 357 226 89 37 chr6 51980083 51980233 -130435009 + MER20B DNA MER1_type 3 169 -50 1517 169 20 37 chr6 51980291 51980586 -130434656 - AluJb SINE Alu -20 292 3 509 230 152 47 chr6 51980638 51980829 -130434413 - MIR SINE MIR -3 259 49 778 155 84 13 chr6 51983458 51983613 -130431629 + MIR SINE MIR 72 237 -25 423 255 51 0 chr6 51984618 51984716 -130430526 - L2 LINE L2 -3 3310 3208 2312 105 0 3 chr6 51985263 51985567 -130429675 + AluSg SINE Alu 1 303 -7 541 206 29 37 chr6 51985700 51985836 -130429406 + MIR SINE MIR 31 165 -97 230 267 183 0 chr6 51986425 51986545 -130428697 + MIR3 SINE MIR 64 205 -3 586 248 9 0 chr6 51987127 51987240 -130428002 - MER81 DNA DNA 0 114 1 210 308 0 15 chr6 51987248 51987313 -130427929 - MER5A DNA MER1_type -4 185 122 580 183 51 44 chr6 51987408 51987545 -130427697 + MER5B DNA MER1_type 1 138 -40 633 249 8 24 chr6 51987760 51987958 -130427284 + L1ME3A LINE L1 5650 5810 -311 887 207 0 6 chr6 51988834 51988998 -130426244 - MER5A DNA MER1_type -1 188 26 231 167 0 0 chr6 51989026 51989068 -130426174 + CT-rich Low_complexity Low_complexity 3 44 0 3135 160 36 33 chr6 51989068 51989644 -130425598 - L1MB5 LINE L1 -13 6161 5584 251 241 241 27 chr6 51989650 51989762 -130425480 - MIR SINE MIR -121 141 6 471 222 111 14 chr6 51990115 51990259 -130424983 - MIR SINE MIR -12 250 93 2399 105 0 3 chr6 51991040 51991353 -130423889 - AluSx SINE Alu 0 312 1 359 194 36 133 chr6 51991555 51991720 -130423522 + MLT1I LTR MaLR 249 397 -12 190 289 34 107 chr6 51991768 51991917 -130423325 - L2 LINE L2 -8 3305 3168 400 267 23 85 chr6 51992219 51992395 -130422847 - MIR3 SINE MIR -7 201 37 5974 190 43 60 chr6 51994179 51995447 -130419795 - Charlie1a DNA MER1_type -1306 1455 213 2338 138 20 0 chr6 51995447 51995788 -130419454 + MER7A DNA MER2_type 1 346 0 5974 190 43 60 chr6 51995788 51995998 -130419244 - Charlie1a DNA MER1_type -2548 213 1 236 247 100 53 chr6 51996101 51996291 -130418951 - L2 LINE L2 -1314 2000 1802 1943 207 50 7 chr6 51996430 51996846 -130418396 + MLT1C LTR MaLR 34 467 0 231 36 0 0 chr6 51996979 51997007 -130418235 + (TG)n Simple_repeat Simple_repeat 2 29 0 2136 121 0 3 chr6 51997821 51998147 -130417095 + AluSx SINE Alu 1 325 0 24 67 0 0 chr6 51998938 51998983 -130416259 + AT_rich Low_complexity Low_complexity 1 45 0 205 263 46 112 chr6 51999037 51999109 -130416133 - MIR SINE MIR -64 198 140 2251 111 47 60 chr6 51999109 51999489 -130415753 - THE1C LTR MaLR 0 375 1 205 263 46 112 chr6 51999489 51999568 -130415674 - MIR SINE MIR -122 140 57 371 250 0 0 chr6 52000674 52000754 -130414488 - MER69 DNA AcHobo 0 2526 2447 1133 163 0 0 chr6 52000766 52000950 -130414292 + AluJb SINE Alu 129 312 0 529 218 20 0 chr6 52001011 52001112 -130414130 - MER69 DNA AcHobo -1089 137 35 2871 211 91 14 chr6 52001305 52002021 -130413221 - MER21B LTR ERV1 -81 782 12 724 271 81 5 chr6 52003003 52003224 -130412018 + MIR SINE MIR 2 239 -23 202 246 16 0 chr6 52003330 52003391 -130411851 + (TA)n Simple_repeat Simple_repeat 1 62 0 594 328 133 46 chr6 52003798 52004208 -130411034 + L2 LINE L2 2254 2627 -645 782 178 0 16 chr6 52004208 52004364 -130410878 + FLAM_C SINE Alu 1 133 0 594 328 133 46 chr6 52004364 52004811 -130410431 + L2 LINE L2 2627 3197 -75 852 39 0 0 chr6 52005187 52005291 -130409951 + (TG)n Simple_repeat Simple_repeat 2 105 0 404 317 183 0 chr6 52006546 52006710 -130408532 - MIR SINE MIR -21 241 48 213 132 0 0 chr6 52006987 52007025 -130408217 + (TG)n Simple_repeat Simple_repeat 2 39 0 233 222 16 16 chr6 52007648 52007711 -130407531 - MIR SINE MIR 0 262 200 309 297 174 29 chr6 52007735 52007873 -130407369 + MER5A DNA MER1_type 25 182 -7 258 339 31 8 chr6 52008484 52008614 -130406628 - MIR3 SINE MIR -28 180 48 192 40 0 0 chr6 52008727 52008752 -130406490 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 313 215 13 81 chr6 52009055 52009120 -130406122 - HAL1b LINE L1 -232 1116 1048 1513 203 34 14 chr6 52009120 52009411 -130405831 + AluJb SINE Alu 6 302 -10 313 215 13 81 chr6 52009411 52009494 -130405748 - HAL1b LINE L1 -300 1048 978 24 0 0 0 chr6 52009673 52009697 -130405545 + AT_rich Low_complexity Low_complexity 1 24 0 344 288 143 43 chr6 52010166 52010559 -130404683 - HAL1 LINE L1 -706 1801 1370 372 260 179 12 chr6 52010577 52010750 -130404492 + MER58A DNA MER1_type 1 202 -22 1015 194 0 12 chr6 52010750 52010920 -130404322 - FRAM SINE Alu -11 165 1 252 257 201 28 chr6 52011560 52011774 -130403468 - HAL1 LINE L1 -887 1620 1370 464 246 162 16 chr6 52011792 52011983 -130403259 + MER58A DNA MER1_type 1 219 -5 228 284 41 91 chr6 52012051 52012515 -130402727 - HAL1 LINE L1 -1225 1282 842 538 255 58 43 chr6 52012620 52012946 -130402296 - LTR16A LTR ERVL -30 420 90 1613 266 35 26 chr6 52013450 52014014 -130401228 + MLT1E LTR MaLR 1 571 -22 260 135 0 0 chr6 52014015 52014061 -130401181 - MLT2D LTR ERVL -2 412 350 195 162 0 0 chr6 52014061 52014098 -130401144 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 1617 186 45 11 chr6 52014117 52014471 -130400771 - MLT2D LTR ERVL -48 366 1 223 260 219 0 chr6 52014566 52014639 -130400603 + MIR SINE MIR 168 256 -6 324 286 33 11 chr6 52014988 52015079 -130400163 - MIR SINE MIR -150 112 20 266 265 34 60 chr6 52016353 52016470 -130398772 - MIR SINE MIR -55 207 94 423 139 14 0 chr6 52018020 52018092 -130397150 - AluJ/FRAM SINE Alu -8 304 232 2153 120 0 29 chr6 52018857 52019166 -130396076 + AluSg SINE Alu 1 300 -10 263 359 23 0 chr6 52020293 52020421 -130394821 + MER94 DNA DNA 4 134 0 21 0 0 0 chr6 52020979 52021000 -130394242 + AT_rich Low_complexity Low_complexity 1 21 0 1813 178 89 45 chr6 52021166 52021310 -130393932 - L1MC4 LINE L1 0 8042 7906 186 43 0 0 chr6 52021310 52021333 -130393909 + (CA)n Simple_repeat Simple_repeat 2 24 0 1813 178 89 45 chr6 52021333 52021739 -130393503 - L1MC4 LINE L1 -136 7906 7468 472 264 214 0 chr6 52021862 52022002 -130393240 + MER5B DNA MER1_type 1 170 -8 1078 176 48 19 chr6 52022298 52022508 -130392734 - MER20 DNA MER1_type -3 216 1 610 287 68 30 chr6 52022586 52022823 -130392419 + MIR SINE MIR 3 248 -14 255 211 135 58 chr6 52022803 52022907 -130392335 + MIR SINE MIR 151 262 0 * 421 291 7 8 chr6 52022889 52023022 -130392220 - MIR SINE MIR -64 144 32 201 94 0 0 chr6 52023409 52023441 -130391801 + (CA)n Simple_repeat Simple_repeat 1 32 0 205 264 19 0 chr6 52023780 52023833 -130391409 + (TG)n Simple_repeat Simple_repeat 1 54 0 206 306 74 28 chr6 52024454 52024562 -130390680 + L3b LINE CR1 1190 1302 -281 588 281 30 55 chr6 52024644 52024843 -130390399 - MIR SINE MIR -2 260 67 301 244 12 12 chr6 52024923 52025005 -130390237 + L2 LINE L2 3188 3269 -44 417 88 0 24 chr6 52025195 52025440 -130389802 + AluY SINE Alu 1 313 0 198 273 159 34 chr6 52025826 52025914 -130389328 - MIR3 SINE MIR -4 204 106 1671 178 37 0 chr6 52026100 52026370 -130388872 + AluJo SINE Alu 3 282 -30 240 258 183 0 chr6 52026448 52026541 -130388701 - MIR3 SINE MIR -88 120 11 326 241 170 43 chr6 52028174 52028315 -130386927 - MER5A DNA MER1_type -30 159 1 234 318 12 12 chr6 52028354 52028439 -130386803 - MER5A DNA MER1_type -28 161 77 410 109 0 0 chr6 52028693 52028757 -130386485 - L1PA10 LINE L1 -1 6167 6104 295 293 140 18 chr6 52028777 52028941 -130386301 + MIR SINE MIR 31 214 -48 1636 153 161 0 chr6 52028986 52029333 -130385909 + MER57A LTR ERV1 1 403 0 2438 85 0 7 chr6 52029652 52029958 -130385284 + AluSp SINE Alu 1 304 -9 287 263 11 32 chr6 52030772 52030867 -130384375 + MIR SINE MIR 119 211 -51 326 321 152 0 chr6 52031836 52031948 -130383294 + L2 LINE L2 3125 3253 -19 572 263 103 64 chr6 52032810 52033168 -130382074 + MLT1J LTR MaLR 44 415 -96 211 304 18 71 chr6 52034909 52035021 -130380221 - L2 LINE L2 -325 2988 2883 4212 48 0 4 chr6 52035765 52036286 -130378956 - L1PA7 LINE L1 -2 6152 5634 284 319 160 55 chr6 52036667 52036974 -130378268 - L2 LINE L2 -20 3252 2914 790 253 134 16 chr6 52037383 52037822 -130377420 + L1ME4a LINE L1 5520 6010 -111 331 346 194 23 chr6 52037925 52038912 -130376330 - L2 LINE L2 -609 2705 1550 426 20 0 0 chr6 52039107 52039158 -130376084 + (TG)n Simple_repeat Simple_repeat 1 51 0 36604 63 4 3 chr6 52039939 52045608 -130369634 - L1PA6 LINE L1 -153 6001 324 3492 134 65 0 chr6 52047382 52047980 -130367262 + L1PA16 LINE L1 5523 6159 -7 695 224 10 58 chr6 52048390 52048595 -130366647 + MIR SINE MIR 68 262 0 648 262 5 5 chr6 52048963 52049173 -130366069 + L1M4 LINE L1 2132 2341 -3805 189 170 0 64 chr6 52050008 52050055 -130365187 + MIR SINE MIR 103 146 -116 1344 266 138 24 chr6 52050245 52051097 -130364145 - L2 LINE L2 0 3313 2309 192 308 0 0 chr6 52051348 52051400 -130363842 + MIR3 SINE MIR 146 197 -11 557 249 61 58 chr6 52051486 52051747 -130363495 - MIR SINE MIR 0 262 1 246 313 99 8 chr6 52052040 52052171 -130363071 - MIR3 SINE MIR -24 184 42 1806 224 59 8 chr6 52052326 52053259 -130361983 - L1ME3 LINE L1 -88 6074 5072 677 319 62 14 chr6 52055526 52055818 -130359424 + L2 LINE L2 3003 3308 -5 405 294 58 100 chr6 52055924 52056234 -130359008 - L2 LINE L2 -8 3264 2968 614 249 102 40 chr6 52056340 52056565 -130358677 - L2 LINE L2 0 3313 3075 638 301 32 20 chr6 52056855 52057101 -130358141 + MIR SINE MIR 14 262 0 415 295 176 41 chr6 52057395 52057758 -130357484 + L3 LINE CR1 1144 1555 -22 389 313 50 3 chr6 52057956 52058121 -130357121 - MIR SINE MIR -37 171 30 189 372 0 11 chr6 52058208 52058302 -130356940 + L2 LINE L2 2616 2708 -606 597 282 55 20 chr6 52058452 52058707 -130356535 - Charlie8 DNA MER1_type -2151 266 3 348 263 288 5 chr6 52059785 52059983 -130355259 - MIR SINE MIR 0 262 9 693 309 16 4 chr6 52060618 52060864 -130354378 + MLT1J LTR MaLR 7 255 -256 323 305 65 103 chr6 52061879 52062171 -130353071 + L2 LINE L2 2966 3246 -26 2146 147 0 0 chr6 52062851 52063163 -130352079 + AluSx SINE Alu 1 312 0 1824 161 11 0 chr6 52063557 52063836 -130351406 + AluJb SINE Alu 5 286 -26 610 238 184 20 chr6 52064016 52064451 -130350791 - L2 LINE L2 -61 3252 2742 699 261 20 15 chr6 52064999 52065194 -130350048 - MIR SINE MIR -2 260 65 309 289 12 12 chr6 52065371 52065454 -130349788 + L2 LINE L2 3190 3272 0 274 192 82 14 chr6 52065441 52065514 -130349728 + MIR SINE MIR 185 262 0 * 2229 80 0 13 chr6 52066213 52066536 -130348706 - AluY SINE Alu 0 311 1 323 264 107 21 chr6 52066604 52066744 -130348498 + MIR SINE MIR 52 203 -59 252 259 25 12 chr6 52067501 52067582 -130347660 + (TA)n Simple_repeat Simple_repeat 2 83 0 23 33 0 0 chr6 52068717 52068747 -130346495 + AT_rich Low_complexity Low_complexity 1 30 0 305 216 0 14 chr6 52068873 52068947 -130346295 - AluS SINE Alu -229 74 2 1452 206 114 46 chr6 52069703 52069747 -130345495 - MLT1C LTR MaLR 0 467 427 2387 88 0 0 chr6 52069747 52070042 -130345200 + AluSx SINE Alu 3 297 -15 1452 206 114 46 chr6 52070042 52070434 -130344808 - MLT1C LTR MaLR -40 427 1 1263 134 113 0 chr6 52070555 52070793 -130344449 + L1P LINE L1 1 265 -5881 242 317 214 25 chr6 52071610 52071853 -130343389 + L3b LINE CR1 1105 1393 -190 931 250 74 84 chr6 52071990 52072382 -130342860 + L2 LINE L2 2925 3312 -1 504 265 15 22 chr6 52072929 52073065 -130342177 + MER5B DNA MER1_type 44 178 0 514 304 56 0 chr6 52074188 52074349 -130340893 - MIR SINE MIR -2 260 91 212 268 0 0 chr6 52074805 52074846 -130340396 + L2 LINE L2 3217 3257 -15 201 310 127 0 chr6 52077459 52077530 -130337712 + L2 LINE L2 3193 3272 0 227 339 29 76 chr6 52078026 52078197 -130337045 - L2 LINE L2 -38 3234 3072 737 250 85 11 chr6 52078668 52078856 -130336386 + MER63A DNA MER1_type 9 210 0 216 0 0 0 chr6 52079569 52079593 -130335649 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2009 118 0 0 chr6 52079599 52079871 -130335371 - AluSc SINE Alu -37 272 1 1220 266 12 101 chr6 52079944 52080507 -130334735 + L2 LINE L2 2788 3313 0 324 248 0 26 chr6 52081030 52081143 -130334099 - L1MC5 LINE L1 -44 7917 7808 1067 156 33 0 chr6 52081148 52081328 -130333914 + MER5A DNA MER1_type 2 187 -2 1110 225 65 109 chr6 52081338 52082151 -130333091 - L1MC5 LINE L1 -158 7803 7027 607 133 10 10 chr6 52082173 52082271 -130332971 - AluJ/FLAM SINE Alu -212 100 3 1006 235 63 35 chr6 52082436 52082802 -130332440 - L1MC4a LINE L1 -897 6911 6536 1341 253 146 23 chr6 52083062 52083276 -130331966 - L1MC4a LINE L1 -1575 6233 6047 7397 35 12 0 chr6 52083276 52084188 -130331054 - L1PA3 LINE L1 -1 6154 5236 1341 253 146 23 chr6 52084188 52084708 -130330534 - L1MC4a LINE L1 -1761 6047 5409 261 218 11 35 chr6 52084844 52084931 -130330311 - L1MC4a LINE L1 -2370 5438 5354 883 267 73 40 chr6 52084942 52085339 -130329903 + L2 LINE L2 2887 3296 -17 195 100 0 0 chr6 52085341 52085371 -130329871 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 240 258 0 0 chr6 52086352 52086418 -130328824 + MLT1K LTR MaLR 523 588 0 255 333 16 41 chr6 52086903 52087026 -130328216 - MIR SINE MIR -87 121 2 204 315 56 35 chr6 52088491 52088634 -130326608 + L2 LINE L2 2333 2478 -836 244 273 31 78 chr6 52088810 52088938 -130326304 - MLT1K LTR MaLR -356 232 111 2104 144 0 6 chr6 52089695 52090007 -130325235 + AluSx SINE Alu 1 310 -2 248 316 134 62 chr6 52090067 52090358 -130324884 - L2 LINE L2 -3 3310 2999 195 300 56 56 chr6 52090620 52090710 -130324532 + L2 LINE L2 2613 2702 -612 355 265 0 12 chr6 52090960 52091043 -130324199 + L2 LINE L2 3190 3271 -1 788 250 109 37 chr6 52091385 52091716 -130323526 + MLT1J1 LTR MaLR 94 446 0 1388 69 133 0 chr6 52092261 52092464 -130322778 + MER30 DNA MER1_type 1 230 0 2117 111 0 3 chr6 52092481 52092769 -130322473 + AluSg SINE Alu 1 287 -23 1069 179 0 12 chr6 52093367 52093540 -130321702 + FRAM SINE Alu 1 168 -8 280 316 51 36 chr6 52093576 52093829 -130321413 + L1ME4a LINE L1 111 367 -6056 687 281 72 21 chr6 52093856 52094286 -130320956 + L1ME4a LINE L1 1916 2367 -4755 * 1932 235 89 26 chr6 52094284 52094340 -130320902 + L1MB8 LINE L1 5523 5574 -604 2580 63 0 0 chr6 52094340 52094639 -130320603 - AluY SINE Alu -12 299 1 1932 235 89 26 chr6 52094639 52095199 -130320043 + L1MB8 LINE L1 5574 6178 0 1076 260 45 48 chr6 52095318 52095902 -130319340 + L1ME4a LINE L1 2460 3041 -4081 2124 212 89 34 chr6 52095987 52096517 -130318725 + L1ME4a LINE L1 3032 3620 -3321 1937 186 78 36 chr6 52096517 52097018 -130318224 + Charlie1b DNA MER1_type 2 523 0 2124 212 89 34 chr6 52097018 52097264 -130317978 + L1ME4a LINE L1 3620 3851 -3090 367 231 56 9 chr6 52097262 52097370 -130317872 + L1ME4a LINE L1 4363 4475 -2466 * 297 240 107 0 chr6 52097453 52097603 -130317639 + L1ME4a LINE L1 6511 6676 -240 324 233 90 15 chr6 52097628 52097761 -130317481 + L1ME4a LINE L1 6741 6883 -33 2324 75 0 0 chr6 52097816 52098139 -130317103 - AluY SINE Alu 0 323 1 391 333 12 54 chr6 52098205 52098373 -130316869 - MIR3 SINE MIR -27 181 21 240 100 0 0 chr6 52098700 52098740 -130316502 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 239 331 24 65 chr6 52099533 52099657 -130315585 + MIR SINE MIR 34 152 -56 1772 103 14 21 chr6 52100275 52100557 -130314685 + L1PA8 LINE L1 5893 6172 0 1053 271 36 20 chr6 52100587 52101191 -130314051 + L2 LINE L2 2449 3312 -1 270 306 14 0 chr6 52101795 52101867 -130313375 - MIR SINE MIR -174 88 16 388 218 218 0 chr6 52101895 52102028 -130313214 + MIR SINE MIR 73 234 -28 441 207 45 36 chr6 52102090 52102201 -130313041 - MIR SINE MIR -150 112 1 312 176 33 33 chr6 52104040 52104131 -130311111 - LTR58 LTR ERV1 -239 440 350 459 0 0 0 chr6 52105169 52105220 -130310022 + (TG)n Simple_repeat Simple_repeat 2 52 0 252 323 0 0 chr6 52105267 52105332 -130309910 + MER5B DNA MER1_type 1 65 -113 731 255 20 15 chr6 52105332 52105528 -130309714 + L1MD3 LINE L1 7789 7985 -10 546 226 48 8 chr6 52105530 52105654 -130309588 + MER5B DNA MER1_type 50 178 0 441 0 0 0 chr6 52105861 52105910 -130309332 + (TG)n Simple_repeat Simple_repeat 2 50 0 404 239 26 51 chr6 52107360 52107477 -130307765 - MER5B DNA MER1_type -63 115 2 323 305 16 0 chr6 52107602 52107730 -130307512 - MIR SINE MIR -86 176 47 216 293 35 60 chr6 52107786 52107902 -130307340 - MIR SINE MIR -85 177 65 241 205 0 0 chr6 52108137 52108176 -130307066 - MER81 DNA DNA -75 39 1 521 281 81 27 chr6 52108512 52108697 -130306545 - MIR SINE MIR -10 252 58 307 316 112 13 chr6 52109553 52109705 -130305537 - MER5B DNA MER1_type -1 177 11 970 200 11 0 chr6 52109713 52109888 -130305354 + MER5B DNA MER1_type 1 177 -1 820 212 127 0 chr6 52109985 52110150 -130305092 - MER5A DNA MER1_type -3 186 1 229 333 65 32 chr6 52110811 52110934 -130304308 - MIR SINE MIR -125 137 11 311 221 255 67 chr6 52111020 52111169 -130304073 - MER5A DNA MER1_type -1 188 12 2459 71 0 7 chr6 52111214 52111524 -130303718 + AluY SINE Alu 1 308 -3 207 239 11 43 chr6 52113317 52113409 -130301833 + (TATAA)n Simple_repeat Simple_repeat 1 89 0 1037 205 36 12 chr6 52114724 52114973 -130300269 - LTR37A LTR ERV1 -4 422 168 821 247 109 22 chr6 52115793 52116060 -130299182 + L2 LINE L2 2833 3122 -191 687 84 34 230 chr6 52116062 52116158 -130299084 + Charlie3 DNA MER1_type 2564 2611 -95 2397 109 0 0 chr6 52116158 52116471 -130298771 + AluSq SINE Alu 1 313 0 687 84 34 230 chr6 52116471 52116552 -130298690 + Charlie3 DNA MER1_type 2611 2706 0 890 245 28 32 chr6 52116824 52117077 -130298165 - MIR SINE MIR 0 262 11 1752 183 58 84 chr6 52117424 52117922 -130297320 + MER31A LTR ERV1 1 485 0 288 0 0 0 chr6 52117987 52118019 -130297223 + (TA)n Simple_repeat Simple_repeat 2 33 0 1001 217 0 0 chr6 52118991 52119180 -130296062 - MER58A DNA MER1_type -5 219 31 7619 131 38 8 chr6 52119398 52120593 -130294649 - Tigger3b DNA MER2_type 0 1231 1 555 320 37 40 chr6 52121293 52121752 -130293490 + LTR33 LTR ERVL 1 519 -2 277 232 0 0 chr6 52122527 52122583 -130292659 - MLT1L LTR MaLR -7 608 553 462 270 43 37 chr6 52123219 52123382 -130291860 - MIR SINE MIR -14 248 85 229 331 161 0 chr6 52123852 52123976 -130291266 - MIR3 SINE MIR -13 195 52 1922 137 31 3 chr6 52124228 52124521 -130290721 - AluSx SINE Alu -9 303 3 204 274 0 16 chr6 52124824 52124886 -130290356 + CT-rich Low_complexity Low_complexity 6 66 0 288 346 39 10 chr6 52125103 52125207 -130290035 + L2 LINE L2 3162 3268 -4 1800 108 0 118 chr6 52125919 52126275 -130288967 - AluSx SINE Alu 0 320 3 191 326 98 42 chr6 52126386 52126622 -130288620 + L2 LINE L2 2633 2881 -433 1626 181 26 0 chr6 52126668 52126969 -130288273 - MER58B DNA MER1_type 0 341 27 203 219 78 31 chr6 52127253 52127317 -130287925 + L2 LINE L2 3205 3271 -1 2158 96 0 50 chr6 52127435 52127757 -130287485 + AluSg SINE Alu 5 310 0 340 317 87 12 chr6 52128817 52128978 -130286264 + MIR SINE MIR 12 184 -78 238 288 15 0 chr6 52129051 52129117 -130286125 + L2 LINE L2 3241 3307 -6 378 233 150 8 chr6 52129643 52129763 -130285479 + MER91C DNA MER1_type 2 138 -2 1432 212 45 21 chr6 52131118 52131448 -130283794 - MER46C DNA MER2_type 0 338 1 884 206 11 16 chr6 52131484 52131673 -130283569 + MER5A DNA MER1_type 1 188 -1 196 250 69 42 chr6 52131674 52131746 -130283496 + MIR3 SINE MIR 1 74 -134 * 200 236 45 91 chr6 52131744 52131854 -130283388 + MIR SINE MIR 102 206 -56 283 129 145 16 chr6 52132315 52132377 -130282865 + MIR SINE MIR 60 129 -79 515 305 11 82 chr6 52133108 52133377 -130281865 + MIR SINE MIR 2 251 -11 290 269 14 123 chr6 52134140 52134201 -130281041 - L2 LINE L2 -160 3112 3046 396 59 0 0 chr6 52134201 52134252 -130280990 + (TG)n Simple_repeat Simple_repeat 1 51 0 290 269 14 123 chr6 52134252 52134409 -130280833 - L2 LINE L2 -226 3046 2918 974 197 61 10 chr6 52134631 52134829 -130280413 - MER3 DNA MER1_type 0 209 2 899 265 103 14 chr6 52135022 52135373 -130279869 + LTR33A LTR ERVL 142 523 0 222 241 37 0 chr6 52135574 52135628 -130279614 - MIR SINE MIR -105 157 102 840 238 36 66 chr6 52135634 52135966 -130279276 + L1ME2 LINE L1 5840 6161 -3 384 247 32 39 chr6 52135974 52136128 -130279114 + L1MC5 LINE L1 7772 7924 -37 3456 78 15 55 chr6 52136456 52136607 -130278635 + L1PA8A LINE L1 4864 5019 -1112 2385 100 0 13 chr6 52136607 52136917 -130278325 + AluSx SINE Alu 1 306 -6 3456 78 15 55 chr6 52136917 52137349 -130277893 + L1PA8A LINE L1 5019 5415 -716 2342 92 0 29 chr6 52137349 52137663 -130277579 + AluSq SINE Alu 1 305 -8 3456 78 15 55 chr6 52137663 52137741 -130277501 + L1PA8A LINE L1 5415 5495 -636 7932 38 0 6 chr6 52137741 52139332 -130275910 + L1PA5 LINE L1 4598 6154 0 5239 85 16 11 chr6 52139332 52140012 -130275230 + L1PA8 LINE L1 5474 6170 -2 290 364 96 32 chr6 52140254 52140474 -130274768 + L2 LINE L2 2830 3063 -209 21 0 0 0 chr6 52142034 52142055 -130273187 + AT_rich Low_complexity Low_complexity 1 21 0 226 324 169 7 chr6 52143836 52143972 -130271270 + MIR SINE MIR 69 226 -36 401 250 41 25 chr6 52144082 52144235 -130271007 + MIR SINE MIR 9 162 -67 857 41 0 0 chr6 52144251 52144349 -130270893 + L1PA5 LINE L1 5791 5888 -266 248 170 0 0 chr6 52144919 52144966 -130270276 + L2 LINE L2 3266 3312 -1 223 354 223 0 chr6 52144973 52145148 -130270094 + L3 LINE CR1 741 954 -623 450 333 25 0 chr6 52145725 52145884 -130269358 + MIR SINE MIR 86 248 -14 1926 255 93 47 chr6 52147065 52147880 -130267362 - L2 LINE L2 -499 2815 1963 443 271 60 54 chr6 52149152 52149318 -130265924 + MER5A DNA MER1_type 21 187 -2 193 209 30 0 chr6 52150503 52150570 -130264672 + (TG)n Simple_repeat Simple_repeat 2 70 0 4021 126 48 6 chr6 52150575 52151201 -130264041 + MER39B LTR ERV1 2 653 0 2411 81 0 3 chr6 52151234 52151532 -130263710 - AluY SINE Alu -14 297 1 1364 152 5 0 chr6 52151558 52151768 -130263474 + AluSp SINE Alu 1 211 -102 1512 309 98 26 chr6 52151869 52152775 -130262467 - L2 LINE L2 -618 2696 1726 24 53 0 0 chr6 52154050 52154088 -130261154 + AT_rich Low_complexity Low_complexity 1 38 0 2271 134 28 52 chr6 52154341 52154765 -130260477 + MLT2D LTR ERVL 1 414 0 398 294 218 46 chr6 52154921 52155315 -130259927 - L2 LINE L2 -481 2833 2372 25 0 0 0 chr6 52155593 52155618 -130259624 + AT_rich Low_complexity Low_complexity 1 25 0 305 160 13 27 chr6 52155669 52155710 -130259532 + L1MB7 LINE L1 6105 6146 -38 1637 195 36 3 chr6 52155710 52156043 -130259199 + MER2 DNA MER2_type 1 344 0 305 160 13 27 chr6 52156043 52156076 -130259166 + L1MB7 LINE L1 6146 6178 -6 2003 138 0 22 chr6 52156408 52156719 -130258523 - AluJb SINE Alu -8 304 1 593 247 101 74 chr6 52156862 52157239 -130258003 - L1ME LINE L1 -324 5797 5411 432 296 70 42 chr6 52157709 52157922 -130257320 - MIR SINE MIR -23 239 21 235 297 71 80 chr6 52158215 52158427 -130256815 + L2 LINE L2 899 1108 -2206 379 268 153 25 chr6 52158483 52158580 -130256662 - MER63B DNA MER1_type -627 434 351 336 102 0 0 chr6 52158580 52158629 -130256613 + (TA)n Simple_repeat Simple_repeat 2 50 0 379 268 153 25 chr6 52158629 52158688 -130256554 - MER63B DNA MER1_type -710 351 258 1440 108 0 0 chr6 52158705 52158891 -130256351 + AluSc SINE Alu 1 186 -123 1010 266 25 0 chr6 52158945 52159182 -130256060 - MER63B DNA MER1_type -192 244 2 326 247 27 0 chr6 52159183 52159256 -130255986 + MER5A DNA MER1_type 115 189 0 29 28 0 0 chr6 52159522 52159558 -130255684 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr6 52159933 52159980 -130255262 + AT_rich Low_complexity Low_complexity 1 47 0 2158 109 3 10 chr6 52160441 52160743 -130254499 - AluSx SINE Alu -12 300 1 242 277 72 0 chr6 52160825 52160908 -130254334 - L2 LINE L2 -36 3236 3148 193 347 147 18 chr6 52161045 52161446 -130253796 - L2 LINE L2 -575 2739 2287 435 329 50 100 chr6 52161458 52161759 -130253483 + L2 LINE L2 2986 3271 -1 2447 106 44 48 chr6 52161918 52162352 -130252890 + MSTB1 LTR MaLR 1 432 0 461 303 55 28 chr6 52163102 52163247 -130251995 - MIR3 SINE MIR -30 178 30 548 311 24 24 chr6 52163704 52163916 -130251326 - MIR SINE MIR 0 262 51 715 266 24 40 chr6 52164056 52164308 -130250934 - MIR SINE MIR -13 249 2 300 292 248 0 chr6 52164573 52164734 -130250508 + MIR SINE MIR 52 252 -10 460 242 57 32 chr6 52164768 52164892 -130250350 - L2 LINE L2 -9 3304 3178 586 200 37 7 chr6 52165037 52165172 -130250070 - Charlie1 DNA MER1_type 0 2761 2623 * 867 217 16 91 chr6 52165161 52165414 -130249828 - Charlie1 DNA MER1_type -2524 237 4 25 31 0 0 chr6 52165448 52165480 -130249762 + AT_rich Low_complexity Low_complexity 1 32 0 2183 130 7 0 chr6 52165788 52166096 -130249146 - AluSx SINE Alu -2 310 1 478 185 0 0 chr6 52166704 52166775 -130248467 - MIR SINE MIR -141 121 51 267 312 155 9 chr6 52166775 52166932 -130248310 + MIR SINE MIR 1 180 -82 594 295 114 17 chr6 52167185 52167422 -130247820 + MIR SINE MIR 2 261 -1 390 310 109 6 chr6 52168237 52168411 -130246831 + L2 LINE L2 3122 3313 0 226 234 16 47 chr6 52168428 52168492 -130246750 - HAL1 LINE L1 -1816 691 630 336 234 108 104 chr6 52168576 52168807 -130246435 - HAL1 LINE L1 -2181 326 95 196 345 71 18 chr6 52169191 52169304 -130245938 + MIR3 SINE MIR 3 121 -87 361 297 65 19 chr6 52169534 52169689 -130245553 - L2 LINE L2 -34 3279 3118 341 339 137 36 chr6 52169774 52170219 -130245023 - L2 LINE L2 -354 2960 2471 234 128 0 0 chr6 52171016 52171055 -130244187 + (TG)n Simple_repeat Simple_repeat 2 40 0 904 171 7 7 chr6 52171117 52171269 -130243973 - AluJb SINE Alu -24 288 137 2051 127 3 0 chr6 52172099 52172413 -130242829 - AluSp SINE Alu 0 315 1 30 0 0 0 chr6 52172423 52172453 -130242789 + AT_rich Low_complexity Low_complexity 1 30 0 280 135 0 0 chr6 52172715 52172752 -130242490 + tRNA-Trp tRNA tRNA 1 37 -38 2190 170 76 47 chr6 52173247 52173695 -130241547 + MLT1D LTR MaLR 21 481 -24 306 259 252 0 chr6 52173724 52173871 -130241371 + MER63A DNA MER1_type 27 210 0 1008 181 43 0 chr6 52174639 52174849 -130240393 + MER20 DNA MER1_type 1 219 0 2269 88 0 7 chr6 52176118 52176415 -130238827 - AluSq SINE Alu -18 295 1 608 318 0 26 chr6 52176530 52176722 -130238520 - MIR SINE MIR -71 191 5 331 290 130 0 chr6 52178684 52178784 -130236458 + L2 LINE L2 3199 3311 -2 306 266 57 16 chr6 52179341 52179465 -130235777 + MARNA DNA Mariner 263 391 -195 238 245 0 0 chr6 52179494 52179543 -130235699 + MARNA DNA Mariner 487 535 -51 354 318 71 0 chr6 52181093 52181247 -130233995 - MIR SINE MIR -70 192 28 288 280 51 70 chr6 52182201 52182358 -130232884 + MER91A DNA MER1_type 1 154 -42 30 0 0 0 chr6 52183375 52183405 -130231837 + AT_rich Low_complexity Low_complexity 1 30 0 355 351 18 0 chr6 52183912 52184026 -130231216 - L2 LINE L2 -16 3256 3141 14334 192 71 30 chr6 52184379 52190969 -130224273 + L1MA8 LINE L1 676 7250 -1 661 275 89 19 chr6 52191110 52191423 -130223819 - MER46C DNA MER2_type -1 337 3 219 159 0 23 chr6 52191810 52191854 -130223388 + (TG)n Simple_repeat Simple_repeat 2 44 0 190 277 185 0 chr6 52191983 52192048 -130223194 + L2 LINE L2 3183 3259 -13 555 241 85 0 chr6 52192059 52192200 -130223042 + MIR SINE MIR 2 154 -108 766 267 89 75 chr6 52192207 52192566 -130222676 - MLT1I LTR MaLR -5 404 41 280 296 41 10 chr6 52192576 52192674 -130222568 + MIR SINE MIR 152 252 -10 22 56 0 0 chr6 52192685 52192721 -130222521 + AT_rich Low_complexity Low_complexity 1 36 0 1083 23 0 8 chr6 52192721 52192851 -130222391 + L1PA7 LINE L1 6024 6152 -2 2412 81 7 3 chr6 52195477 52195786 -130219456 + AluY SINE Alu 1 310 -1 724 221 50 112 chr6 52197169 52197427 -130217815 - MIR SINE MIR -7 255 14 195 231 26 0 chr6 52197940 52197979 -130217263 - MIR SINE MIR -86 122 83 22 35 0 0 chr6 52198392 52198421 -130216821 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 52198516 52198553 -130216689 + AT_rich Low_complexity Low_complexity 1 37 0 2049 112 0 21 chr6 52198813 52199100 -130216142 - AluSq SINE Alu -32 281 1 200 412 31 0 chr6 52199522 52199619 -130215623 + MIR SINE MIR 42 141 -67 1755 190 0 13 chr6 52199959 52200264 -130214978 - AluJo SINE Alu -11 301 1 194 265 88 140 chr6 52200402 52200674 -130214568 + L2 LINE L2 3015 3272 0 855 233 118 25 chr6 52200953 52201275 -130213967 - L1ME4a LINE L1 -29 6092 5741 2294 112 3 3 chr6 52201480 52201793 -130213449 - AluSp SINE Alu 0 313 1 326 304 37 91 chr6 52203239 52203482 -130211760 + L3 LINE CR1 1337 1566 -11 25 51 0 0 chr6 52204261 52204300 -130210942 + AT_rich Low_complexity Low_complexity 1 39 0 1160 268 87 30 chr6 52205248 52205741 -130209501 - LTR33 LTR ERVL 0 521 1 800 245 47 22 chr6 52207499 52207728 -130207514 + MIR SINE MIR 28 261 -1 603 245 123 0 chr6 52207836 52207999 -130207243 + MIR SINE MIR 8 190 -72 322 320 0 31 chr6 52208182 52208310 -130206932 + MIR SINE MIR 22 145 -63 213 111 44 22 chr6 52208984 52209029 -130206213 + CT-rich Low_complexity Low_complexity 1 46 0 1055 152 16 173 chr6 52209959 52210392 -130204850 + MLT1A1 LTR MaLR 1 365 0 2005 261 133 13 chr6 52211326 52212034 -130203208 - L2 LINE L2 -413 2901 2109 330 190 13 25 chr6 52212032 52212111 -130203131 + MIR SINE MIR 143 220 -42 * 284 340 60 0 chr6 52212906 52213006 -130202236 + L2 LINE L2 3164 3269 -3 204 135 0 0 chr6 52213587 52213624 -130201618 + (CA)n Simple_repeat Simple_repeat 1 37 0 248 218 18 18 chr6 52213625 52213680 -130201562 + L2 LINE L2 3214 3268 -4 214 345 136 0 chr6 52216029 52216139 -130199103 - L2 LINE L2 -1 3271 3147 341 221 148 60 chr6 52216360 52216504 -130198738 - MIR SINE MIR -37 171 37 269 347 63 0 chr6 52216693 52216788 -130198454 - L2 LINE L2 -9 3263 3163 359 178 0 109 chr6 52216824 52216925 -130198317 + MER21B LTR ERV1 1 90 -773 1181 242 17 48 chr6 52217074 52217425 -130197817 + MER21B LTR ERV1 127 466 -397 742 244 124 14 chr6 52217662 52217879 -130197363 + MIR SINE MIR 20 260 -2 259 311 62 36 chr6 52218361 52218554 -130196688 - MIR3 SINE MIR -6 202 5 980 113 63 0 chr6 52219842 52220001 -130195241 - AluSg/x SINE Alu -7 303 135 654 299 20 10 chr6 52220162 52220381 -130194861 + MIR SINE MIR 42 262 0 2165 80 17 7 chr6 52220647 52220936 -130194306 - AluY SINE Alu -19 292 1 227 328 49 41 chr6 52221056 52221178 -130194064 - L2 LINE L2 -5 3267 3145 251 314 191 0 chr6 52221207 52221312 -130193930 + L2 LINE L2 3147 3271 -1 43 35 0 0 chr6 52222222 52222279 -130192963 + AT_rich Low_complexity Low_complexity 1 57 0 894 296 74 25 chr6 52224982 52225533 -130189709 + L1ME4a LINE L1 5519 6096 -25 217 241 37 0 chr6 52226169 52226223 -130189019 - MIR SINE MIR -97 165 110 517 296 25 12 chr6 52226233 52226395 -130188847 + MIR SINE MIR 98 261 -1 304 366 0 0 chr6 52226415 52226497 -130188745 - MIR SINE MIR -111 97 16 298 314 50 16 chr6 52227577 52227698 -130187544 - MIR SINE MIR -69 193 69 423 220 77 66 chr6 52227950 52228132 -130187110 - MIR3 SINE MIR -15 193 10 675 288 46 23 chr6 52228223 52228442 -130186800 + MIR SINE MIR 38 261 -1 258 301 137 81 chr6 52229144 52229466 -130185776 + L2 LINE L2 2925 3264 -8 222 338 0 0 chr6 52232226 52232294 -130182948 - L3 LINE CR1 -9 1568 1501 490 312 45 56 chr6 52232336 52232602 -130182640 - L3 LINE CR1 -187 1390 1128 350 219 24 12 chr6 52232715 52232797 -130182445 + MIR SINE MIR 178 260 -2 695 259 147 18 chr6 52233173 52233397 -130181845 - MIR SINE MIR -8 254 2 4619 187 43 47 chr6 52233434 52234583 -130180659 - L1MC1 LINE L1 -30 6303 5164 2195 113 0 0 chr6 52234583 52234866 -130180376 - AluSg SINE Alu -23 287 5 4619 187 43 47 chr6 52234866 52235640 -130179602 - L1MC1 LINE L1 -1169 5164 4388 485 212 38 0 chr6 52235634 52235766 -130179476 - L1M4 LINE L1 -814 5332 5196 * 715 208 30 25 chr6 52235783 52235980 -130179262 - L1MC4 LINE L1 -1373 6669 6472 2010 152 3 0 chr6 52236154 52236451 -130178791 + AluJb SINE Alu 1 298 -14 670 298 100 65 chr6 52236456 52236886 -130178356 - L3 LINE CR1 -510 1067 623 2362 85 0 10 chr6 52237219 52237525 -130177717 + AluSc SINE Alu 3 305 -4 598 224 32 16 chr6 52237552 52237677 -130177565 - L2 LINE L2 0 3313 3187 200 200 0 25 chr6 52237862 52237902 -130177340 - L3 LINE CR1 -7 1570 1532 232 339 80 9 chr6 52238092 52238204 -130177038 - MIR SINE MIR -26 236 117 619 264 109 10 chr6 52238626 52238827 -130176415 - MIR SINE MIR -10 252 32 303 279 45 45 chr6 52239041 52239152 -130176090 - MIR SINE MIR -67 141 31 1437 214 22 9 chr6 52239718 52240040 -130175202 - MER90 LTR ERV1 0 614 289 214 195 0 0 chr6 52240527 52240568 -130174674 + A-rich Low_complexity Low_complexity 1 41 0 710 170 22 22 chr6 52241177 52241312 -130173930 + MER5A DNA MER1_type 47 181 -8 819 259 16 0 chr6 52241314 52241503 -130173739 - MIR SINE MIR -41 221 30 216 309 74 62 chr6 52241800 52241881 -130173361 - MER5A DNA MER1_type -48 141 60 312 27 0 0 chr6 52242537 52242574 -130172668 + (CA)n Simple_repeat Simple_repeat 2 38 0 427 249 114 78 chr6 52242876 52243069 -130172173 + MIR3 SINE MIR 6 205 -3 239 341 11 11 chr6 52244033 52244124 -130171118 - MIR SINE MIR -21 241 151 444 275 168 10 chr6 52244263 52244458 -130170784 + MIR SINE MIR 32 254 -8 683 176 176 0 chr6 52244605 52244758 -130170484 + MER5A DNA MER1_type 4 183 -6 359 301 23 69 chr6 52245062 52245324 -130169918 + MER112 DNA MER1_type 1 250 -10 240 200 15 46 chr6 52245406 52245471 -130169771 + L2 LINE L2 3210 3272 0 526 268 121 15 chr6 52246295 52246493 -130168749 + MIR SINE MIR 44 262 0 964 203 44 4 chr6 52246633 52246884 -130168358 + L1MD3 LINE L1 7735 7995 0 315 265 235 41 chr6 52247318 52247514 -130167728 + MIR SINE MIR 20 253 -9 421 304 60 37 chr6 52247705 52247922 -130167320 + MIR SINE MIR 28 249 -13 527 283 70 39 chr6 52247932 52248218 -130167024 + MLT1L LTR MaLR 10 304 -311 490 205 27 0 chr6 52248358 52248470 -130166772 + MLT1L LTR MaLR 500 614 -1 311 242 50 30 chr6 52248489 52248588 -130166654 - MIR SINE MIR -97 165 65 401 288 49 51 chr6 52249282 52249488 -130165754 - MIR SINE MIR -41 221 17 399 279 46 69 chr6 52249896 52250158 -130165084 + MER102a DNA MER1_type 75 330 0 302 262 56 0 chr6 52250163 52250289 -130164953 + L1ME4a LINE L1 5987 6119 -2 887 328 127 32 chr6 52250303 52250428 -130164814 + L3 LINE CR1 839 951 -626 180 0 0 0 chr6 52250428 52250448 -130164794 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 887 328 127 32 chr6 52250448 52250919 -130164323 + L3 LINE CR1 951 1492 -85 464 230 168 25 chr6 52251764 52251960 -130163282 - MIR SINE MIR -14 248 25 26 30 0 0 chr6 52252273 52252306 -130162936 + AT_rich Low_complexity Low_complexity 1 33 0 269 214 86 114 chr6 52252586 52252866 -130162376 + L1ME4a LINE L1 5850 6121 0 594 245 75 7 chr6 52252880 52253027 -130162215 - MIR SINE MIR 0 262 106 1576 140 0 9 chr6 52253550 52253778 -130161464 - AluSg/x SINE Alu -16 296 71 318 0 62 31 chr6 52254013 52254077 -130161165 + (TA)n Simple_repeat Simple_repeat 2 67 0 331 96 75 21 chr6 52254077 52254143 -130161099 + (TTATA)n Simple_repeat Simple_repeat 4 102 0 28 0 0 0 chr6 52254143 52254171 -130161071 + AT_rich Low_complexity Low_complexity 1 28 0 669 65 71 0 chr6 52254171 52254339 -130160903 + (TA)n Simple_repeat Simple_repeat 1 180 0 678 99 51 10 chr6 52254357 52254654 -130160588 + (TA)n Simple_repeat Simple_repeat 1 309 0 323 248 67 9 chr6 52254720 52254825 -130160417 - L1ME4a LINE L1 -38 6083 5973 262 231 15 0 chr6 52254974 52255039 -130160203 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 4434 162 30 34 chr6 52255067 52255963 -130159279 - L1MA9 LINE L1 -7 6305 5413 24 53 0 0 chr6 52256038 52256076 -130159166 + AT_rich Low_complexity Low_complexity 1 38 0 415 186 21 0 chr6 52256192 52256289 -130158953 + CT-rich Low_complexity Low_complexity 4 102 0 669 269 46 18 chr6 52256702 52256921 -130158321 + MLT1J LTR MaLR 26 250 -261 23 68 0 0 chr6 52257058 52257102 -130158140 + AT_rich Low_complexity Low_complexity 1 44 0 396 59 0 0 chr6 52257150 52257201 -130158041 + (TG)n Simple_repeat Simple_repeat 2 52 0 353 307 85 32 chr6 52258633 52258916 -130156326 + L1ME4a LINE L1 5813 6110 -11 262 260 22 29 chr6 52259110 52259193 -130156049 + MIR SINE MIR 78 164 -44 405 96 0 27 chr6 52259193 52259266 -130155976 - L1PA7 LINE L1 0 6154 6084 262 260 22 29 chr6 52259266 52259286 -130155956 + MIR SINE MIR 164 183 -25 2147 128 0 13 chr6 52260130 52260443 -130154799 - AluSx SINE Alu -3 309 1 351 304 119 24 chr6 52260776 52260944 -130154298 - MIR3 SINE MIR -10 198 15 384 250 28 37 chr6 52261930 52262038 -130153204 - MIR SINE MIR -91 171 65 203 88 29 0 chr6 52262113 52262147 -130153095 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 4690 69 31 0 chr6 52262400 52263021 -130152221 - L1PA13 LINE L1 0 6163 5524 235 302 47 0 chr6 52263149 52263235 -130152007 + MER103 DNA DNA 13 102 -64 189 171 0 0 chr6 52263269 52263304 -130151938 + T-rich Low_complexity Low_complexity 1 35 0 225 291 172 66 chr6 52263603 52263830 -130151412 + L2 LINE L2 3035 3291 -22 198 71 0 0 chr6 52263830 52263858 -130151384 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 259 293 40 0 chr6 52263858 52263933 -130151309 - L2 LINE L2 -13 3300 3223 23 54 0 0 chr6 52264029 52264066 -130151176 + AT_rich Low_complexity Low_complexity 1 37 0 446 360 59 11 chr6 52264141 52264327 -130150915 - MIR SINE MIR -48 214 20 1238 254 58 39 chr6 52266450 52266860 -130148382 - MLT1J2 LTR MaLR -9 441 24 30 0 0 0 chr6 52267176 52267206 -130148036 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr6 52267277 52267298 -130147944 + (GA)n Simple_repeat Simple_repeat 1 21 0 751 213 26 0 chr6 52267996 52268151 -130147091 + MIR SINE MIR 17 175 -87 189 266 13 63 chr6 52269397 52269476 -130145766 - MIR3 SINE MIR -9 199 125 188 309 113 0 chr6 52269871 52269968 -130145274 + MIR SINE MIR 154 261 -1 2132 110 10 0 chr6 52270144 52270436 -130144806 - AluSq SINE Alu -18 295 1 631 167 0 0 chr6 52271025 52271139 -130144103 - L1MB8 LINE L1 -2 6176 6063 1916 9 0 0 chr6 52271148 52271368 -130143874 - L1PA3 LINE L1 -1379 4767 4548 7741 23 0 1 chr6 52271368 52272764 -130142478 + L1PA3 LINE L1 4759 6155 0 894 157 13 0 chr6 52272781 52272940 -130142302 - L1MA9 LINE L1 -184 6128 5968 558 161 59 0 chr6 52272940 52273058 -130142184 + L1MA9 LINE L1 6118 6242 -70 3339 167 28 53 chr6 52273082 52273310 -130141932 - L1MB7 LINE L1 -147 6037 5805 509 71 47 35 chr6 52273310 52273395 -130141847 - L1MC1 LINE L1 0 6333 6248 3339 167 28 53 chr6 52273395 52273927 -130141315 - L1MB7 LINE L1 -379 5805 5296 1274 172 52 23 chr6 52273935 52274243 -130140999 - L1MB7 LINE L1 -947 5199 4883 364 358 16 16 chr6 52274250 52274373 -130140869 - MIR3 SINE MIR -76 132 10 3166 175 27 14 chr6 52274482 52274934 -130140308 - L1 LINE L1 -1177 4969 4504 2171 117 6 22 chr6 52274934 52275250 -130139992 - AluSx SINE Alu -1 311 1 3166 175 27 14 chr6 52275250 52275455 -130139787 - L1 LINE L1 -1642 4504 4303 4657 139 29 32 chr6 52275474 52276352 -130138890 + L1MA7 LINE L1 5417 6291 0 284 359 134 9 chr6 52276541 52276772 -130138470 - MIR SINE MIR 0 262 3 393 239 158 84 chr6 52277167 52277464 -130137778 - MLT1I LTR MaLR -8 401 83 679 209 43 0 chr6 52278623 52278762 -130136480 - FRAM SINE Alu -21 155 11 784 298 43 0 chr6 52278893 52279021 -130136221 + MIR SINE MIR 18 160 -102 180 0 0 0 chr6 52279021 52279041 -130136201 + (CAA)n Simple_repeat Simple_repeat 2 21 0 784 298 43 0 chr6 52279041 52279120 -130136122 + MIR SINE MIR 160 234 -28 13505 166 143 5 chr6 52279125 52281791 -130133451 + L1MA2 LINE L1 124 3156 -4409 * 13730 153 29 21 chr6 52281782 52283254 -130131988 + L1MA2 LINE L1 3950 5408 -2315 2099 127 3 3 chr6 52283254 52283554 -130131688 + AluSg SINE Alu 5 304 -6 13730 153 29 21 chr6 52283554 52285574 -130129668 + L1MA2 LINE L1 5408 7475 -248 207 0 0 0 chr6 52285574 52285597 -130129645 + (CA)n Simple_repeat Simple_repeat 2 24 0 13730 153 29 21 chr6 52285597 52285849 -130129393 + L1MA2 LINE L1 7475 7723 0 1384 148 3 94 chr6 52285914 52286211 -130129031 + AluJb SINE Alu 15 284 -28 445 369 87 9 chr6 52286852 52287185 -130128057 + LTR16C LTR ERVL 133 491 0 186 343 56 46 chr6 52288134 52288242 -130127000 - L2 LINE L2 -6 3266 3158 24 0 0 0 chr6 52288364 52288388 -130126854 + AT_rich Low_complexity Low_complexity 1 24 0 371 138 12 268 chr6 52291148 52291229 -130124013 + MER5A DNA MER1_type 1 4294967272 -213 1317 139 163 16 chr6 52291229 52291487 -130123755 + AluSg SINE Alu 1 296 -4 371 138 12 268 chr6 52291487 52291659 -130123583 + MER5A DNA MER1_type -25 189 0 192 211 42 99 chr6 52291599 52291670 -130123572 - MER5A DNA MER1_type -116 73 7 * 248 200 156 33 chr6 52292442 52292532 -130122710 + MIR SINE MIR 150 250 -12 988 188 0 67 chr6 52292558 52292781 -130122461 - MER3 DNA MER1_type 0 209 2 239 271 71 26 chr6 52292906 52293061 -130122181 - Charlie7 DNA MER1_type -17 2595 2434 315 85 0 0 chr6 52293457 52293504 -130121738 + (CA)n Simple_repeat Simple_repeat 2 48 0 217 352 14 0 chr6 52293836 52293907 -130121335 + L2 LINE L2 3201 3272 0 240 316 0 51 chr6 52294053 52294132 -130121110 + L2 LINE L2 3129 3203 -69 1774 280 116 57 chr6 52294522 52295787 -130119455 + L1MEc LINE L1 37 1226 -5170 2000 148 0 7 chr6 52295787 52296084 -130119158 + AluSx SINE Alu 3 297 -15 2231 114 7 0 chr6 52296084 52296389 -130118853 + AluSg1 SINE Alu 1 308 -1 1774 280 116 57 chr6 52296389 52296583 -130118659 + L1MEc LINE L1 1225 1583 -4813 1837 136 136 36 chr6 52296626 52297015 -130118227 - MSTA LTR MaLR 0 428 1 2349 94 0 0 chr6 52297142 52297441 -130117801 + AluSc SINE Alu 1 299 -10 189 0 0 0 chr6 52298287 52298308 -130116934 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 334 300 74 7 chr6 52298309 52298548 -130116694 - L2 LINE L2 -17 3296 2988 1986 269 66 48 chr6 52298604 52299387 -130115855 - L2 LINE L2 -552 2762 1966 1337 182 63 13 chr6 52300295 52300446 -130114796 + L1MA8 LINE L1 5968 6110 -181 2150 107 7 0 chr6 52300446 52300747 -130114495 - AluSx SINE Alu 0 305 3 1337 182 63 13 chr6 52300747 52300896 -130114346 + L1MA8 LINE L1 6110 6284 -7 820 163 0 0 chr6 52300912 52301035 -130114207 + AluSq/x SINE Alu 1 123 -189 227 30 0 30 chr6 52301035 52301068 -130114174 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1950 137 0 14 chr6 52302516 52302922 -130112320 - AluSx SINE Alu 0 402 1 1093 159 28 0 chr6 52303442 52303624 -130111618 - MER5A DNA MER1_type -2 187 1 285 361 0 0 chr6 52303833 52303966 -130111276 + A-rich Low_complexity Low_complexity 1 133 0 2875 124 27 14 chr6 52303966 52304448 -130110794 + LTR45B LTR ERV1 2 489 0 2169 126 16 49 chr6 52304697 52305085 -130110157 - THE1C LTR MaLR 0 375 1 30 27 0 0 chr6 52305207 52305244 -130109998 + AT_rich Low_complexity Low_complexity 1 37 0 258 231 0 0 chr6 52305261 52305326 -130109916 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 3989 163 42 22 chr6 52305326 52306097 -130109145 - L1MA9 LINE L1 -76 7257 6472 1365 220 58 21 chr6 52306099 52306530 -130108712 - MER65B LTR ERV1 -5 526 1 12540 223 45 31 chr6 52306530 52308951 -130106291 - L1MA9 LINE L1 -724 6477 4092 2030 181 73 2 chr6 52308951 52309349 -130105893 - MSTB LTR MaLR 0 426 1 12540 223 45 31 chr6 52309349 52312047 -130103195 - L1MA9 LINE L1 -3109 4092 1579 418 323 71 62 chr6 52312380 52312860 -130102382 - MLT1K LTR MaLR -3 585 102 14450 229 42 33 chr6 52313281 52314326 -130100916 + L1PA15 LINE L1 1 1034 -5782 2353 161 16 19 chr6 52314326 52314755 -130100487 - MSTA LTR MaLR 0 428 1 14450 229 42 33 chr6 52314755 52319552 -130095690 + L1PA15 LINE L1 1034 6440 -376 1768 163 24 10 chr6 52319552 52319847 -130095395 + AluJo SINE Alu 1 299 -13 14450 229 42 33 chr6 52319847 52320228 -130095014 + L1PA15 LINE L1 6440 6816 0 312 310 60 17 chr6 52321224 52321340 -130093902 + L2 LINE L2 3152 3272 0 456 51 0 0 chr6 52323749 52323808 -130091434 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 513 256 45 65 chr6 52324064 52324263 -130090979 - MLT1L LTR MaLR 0 615 421 25 0 0 0 chr6 52324694 52324719 -130090523 + AT_rich Low_complexity Low_complexity 1 25 0 353 316 43 0 chr6 52324816 52324933 -130090309 + L2 LINE L2 3192 3313 0 196 403 97 8 chr6 52325951 52326075 -130089167 + L3b LINE CR1 1448 1582 -1 44 46 0 0 chr6 52326686 52326751 -130088491 + AT_rich Low_complexity Low_complexity 1 65 0 1808 162 7 7 chr6 52327598 52327894 -130087348 + AluJo SINE Alu 2 297 -15 25 51 0 0 chr6 52328968 52329007 -130086235 + AT_rich Low_complexity Low_complexity 1 39 0 388 264 73 41 chr6 52329044 52329359 -130085883 - L1ME4a LINE L1 -38 6083 5759 23 0 0 0 chr6 52329738 52329761 -130085481 + AT_rich Low_complexity Low_complexity 1 23 0 888 168 18 31 chr6 52329921 52330147 -130085095 + Charlie1 DNA MER1_type 2538 2760 -1 541 268 11 11 chr6 52330879 52331069 -130084173 + L1ME4a LINE L1 5636 5825 -296 1979 131 0 0 chr6 52331100 52331368 -130083874 + AluSx SINE Alu 1 268 -44 497 138 43 21 chr6 52331846 52331940 -130083302 + AluSg/x SINE Alu 214 309 0 2531 141 33 22 chr6 52332725 52334322 -130080920 + L1MA8 LINE L1 4595 6290 -1 368 234 170 7 chr6 52336540 52336681 -130078561 - MER103 DNA DNA 0 166 3 220 230 40 68 chr6 52337255 52337329 -130077913 + MIR SINE MIR 184 255 -7 724 310 33 41 chr6 52338013 52338407 -130076835 + L2 LINE L2 2088 2478 -836 2648 224 37 88 chr6 52338412 52338543 -130076699 + MER21B LTR ERV1 1 137 -726 1865 155 30 3 chr6 52338543 52338846 -130076396 - AluSx SINE Alu 0 312 2 2648 224 37 88 chr6 52338846 52339573 -130075669 + MER21B LTR ERV1 137 815 -48 489 333 139 9 chr6 52339578 52339902 -130075340 + L2 LINE L2 2456 2821 -493 * 690 239 22 31 chr6 52339893 52340085 -130075157 + MIR SINE MIR 55 243 -19 333 0 0 0 chr6 52340092 52340129 -130075113 + (TTA)n Simple_repeat Simple_repeat 2 38 0 956 78 0 0 chr6 52340129 52340244 -130074998 - AluSq/x SINE Alu -194 118 4 502 335 185 9 chr6 52340245 52340570 -130074672 + L2 LINE L2 2926 3307 -6 276 77 0 0 chr6 52340570 52340609 -130074633 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 1062 165 28 6 chr6 52340768 52340950 -130074292 - MER5A DNA MER1_type -1 188 3 1153 122 6 0 chr6 52340959 52341115 -130074127 + AluSp SINE Alu 3 159 -154 222 37 0 0 chr6 52341116 52341143 -130074099 + (A)n Simple_repeat Simple_repeat 1 27 0 835 204 115 0 chr6 52341558 52341631 -130073611 + MER58A DNA MER1_type 4 67 -2353 1867 133 61 123 chr6 52341631 52342126 -130073116 + MER4C LTR ERV1 1 464 -1 835 204 115 0 chr6 52342126 52342243 -130072999 + MER58A DNA MER1_type 67 216 -8 843 276 28 8 chr6 52342588 52342842 -130072400 + Charlie2a DNA MER1_type 53 311 -2551 278 262 24 0 chr6 52342854 52342938 -130072304 + Charlie2a DNA MER1_type 569 654 -2208 766 180 12 36 chr6 52343022 52343189 -130072053 + Charlie2a DNA MER1_type 1466 1628 -1234 427 253 0 40 chr6 52343227 52343333 -130071909 + Charlie2a DNA MER1_type 2719 2819 -43 1374 130 9 35 chr6 52343333 52343564 -130071678 + MER30 DNA MER1_type 5 229 -1 427 253 0 40 chr6 52343564 52343607 -130071635 + Charlie2a DNA MER1_type 2819 2862 0 24 0 0 0 chr6 52343883 52343907 -130071335 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 52344687 52344716 -130070526 + AT_rich Low_complexity Low_complexity 1 29 0 194 299 35 46 chr6 52345276 52345363 -130069879 - L2 LINE L2 0 3272 3187 245 314 59 8 chr6 52345435 52345553 -130069689 - MIR SINE MIR -137 125 2 252 86 0 0 chr6 52345891 52345926 -130069316 + (CA)n Simple_repeat Simple_repeat 2 36 0 34 24 0 0 chr6 52346934 52346975 -130068267 + AT_rich Low_complexity Low_complexity 1 41 0 2369 100 3 0 chr6 52347029 52347340 -130067902 - AluSq SINE Alu -1 312 1 2279 62 6 52 chr6 52347545 52347869 -130067373 + AluY SINE Alu 1 309 -2 1824 152 7 18 chr6 52348786 52349069 -130066173 - AluJo SINE Alu -30 282 3 322 296 72 40 chr6 52349155 52349307 -130065935 - L1M4 LINE L1 -1550 4596 4440 22 0 0 0 chr6 52351119 52351141 -130064101 + AT_rich Low_complexity Low_complexity 1 22 0 181 313 0 42 chr6 52351783 52351831 -130063411 - MIR SINE MIR -168 94 49 36 0 0 0 chr6 52352403 52352439 -130062803 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr6 52352483 52352516 -130062726 + AT_rich Low_complexity Low_complexity 1 33 0 227 128 0 0 chr6 52352707 52352746 -130062496 - MADE1 DNA Mariner -38 42 4 670 264 0 48 chr6 52353112 52353320 -130061922 - LTR67 LTR ERVL -2 555 358 412 325 103 36 chr6 52353418 52353612 -130061630 - LTR67 LTR ERVL -332 225 19 376 274 30 0 chr6 52353625 52353793 -130061449 + (TA)n Simple_repeat Simple_repeat 1 173 0 271 281 72 33 chr6 52354242 52354395 -130060847 + L2 LINE L2 2932 3090 -223 359 179 38 9 chr6 52354423 52354529 -130060713 + CT-rich Low_complexity Low_complexity 4 112 0 753 218 0 0 chr6 52354540 52354710 -130060532 + CT-rich Low_complexity Low_complexity 2 171 0 1135 205 111 8 chr6 52354711 52354955 -130060287 - AluJo SINE Alu -39 273 5 457 249 47 93 chr6 52354958 52355151 -130060091 + L2 LINE L2 3130 3313 0 494 307 48 0 chr6 52355157 52355323 -130059919 - L2 LINE L2 -430 2884 2711 607 333 64 0 chr6 52356066 52356285 -130058957 + MIR SINE MIR 30 262 0 599 317 57 18 chr6 52356559 52356786 -130058456 - MIR SINE MIR -4 258 23 23 0 0 0 chr6 52357160 52357183 -130058059 + AT_rich Low_complexity Low_complexity 1 23 0 990 248 86 30 chr6 52357218 52357557 -130057685 + MER74B LTR ERVL 110 467 -155 296 318 86 73 chr6 52357738 52358053 -130057189 - L2 LINE L2 -4 3309 2991 268 351 43 21 chr6 52358199 52358293 -130056949 + L2 LINE L2 3163 3258 -14 4545 230 14 24 chr6 52358381 52359482 -130055760 + L1M4 LINE L1 1 1091 -5451 405 241 46 0 chr6 52359499 52359586 -130055656 - Tigger5 DNA MER2_type -2232 91 1 1987 240 41 33 chr6 52359598 52360461 -130054781 + L1M4 LINE L1 1103 4363 -2281 1415 237 7 0 chr6 52360465 52360760 -130054482 + L1MB7 LINE L1 5861 6157 -27 27 0 0 0 chr6 52360765 52360792 -130054450 + AT_rich Low_complexity Low_complexity 1 27 0 883 158 36 0 chr6 52360901 52361040 -130054202 + FRAM SINE Alu 9 152 -24 960 211 70 123 chr6 52361578 52362124 -130053118 + MLT2B1 LTR ERVL 1 517 -3 22 35 0 0 chr6 52362989 52363018 -130052224 + AT_rich Low_complexity Low_complexity 1 29 0 233 246 49 0 chr6 52363594 52363655 -130051587 + MIR3 SINE MIR 92 155 -53 240 165 134 0 chr6 52365122 52365188 -130050054 - MIR3 SINE MIR -36 172 93 1772 156 55 27 chr6 52365334 52365699 -130049543 - THE1C LTR MaLR 0 375 1 2411 81 0 0 chr6 52365836 52366133 -130049109 - AluY SINE Alu -3 308 12 22 35 0 0 chr6 52366171 52366200 -130049042 + AT_rich Low_complexity Low_complexity 1 29 0 621 289 91 25 chr6 52367316 52367556 -130047686 - MIR SINE MIR -6 256 3 1106 128 0 12 chr6 52368373 52368564 -130046678 + AluSg/x SINE Alu 132 310 0 302 304 134 25 chr6 52368787 52368988 -130046254 - MIR SINE MIR 0 262 40 1100 217 4 38 chr6 52369655 52369895 -130045347 + MIR SINE MIR 5 236 -26 351 263 8 42 chr6 52370408 52370526 -130044716 - MIR SINE MIR 0 262 149 1770 166 60 14 chr6 52370543 52370892 -130044350 - MER65A LTR ERV1 -35 410 46 981 153 58 5 chr6 52370892 52371082 -130044160 - L1PA13 LINE L1 0 6163 5964 678 251 0 36 chr6 52371082 52371249 -130043993 - MIR SINE MIR -100 162 2 242 325 12 0 chr6 52371501 52371584 -130043658 + MIR SINE MIR 174 257 -5 24 0 0 0 chr6 52371970 52371994 -130043248 + AT_rich Low_complexity Low_complexity 1 24 0 2297 105 0 0 chr6 52372003 52372299 -130042943 + AluSg SINE Alu 1 296 -14 2068 120 71 31 chr6 52372485 52372835 -130042407 + THE1B LTR MaLR 1 364 0 2444 92 0 6 chr6 52372934 52373248 -130041994 - AluSx SINE Alu 0 312 1 430 213 331 0 chr6 52373675 52373811 -130041431 - MIR SINE MIR -43 219 39 330 248 44 18 chr6 52373796 52373909 -130041333 + MER5B DNA MER1_type 62 177 -1 * 1674 159 0 37 chr6 52373969 52374289 -130040953 - AluJo SINE Alu 0 309 1 305 225 0 42 chr6 52374291 52374362 -130040880 - MER5A DNA MER1_type -119 70 3 186 259 103 69 chr6 52374595 52374711 -130040531 + MIR SINE MIR 111 230 -32 1028 258 13 20 chr6 52375337 52375635 -130039607 + MLT1A1 LTR MaLR 2 297 -68 700 188 21 7 chr6 52375629 52375773 -130039469 + MLT1A1 LTR MaLR 220 365 0 * 291 54 0 0 chr6 52376754 52376791 -130038451 + (CAA)n Simple_repeat Simple_repeat 3 39 0 258 132 0 0 chr6 52377733 52377771 -130037471 + AluSc SINE Alu 251 288 -11 1955 139 14 0 chr6 52378261 52378556 -130036686 + AluSx SINE Alu 3 301 -11 246 282 51 0 chr6 52378803 52378881 -130036361 + L2 LINE L2 2979 3060 -212 1208 154 0 15 chr6 52379044 52379245 -130035997 - L1PA16 LINE L1 -9 6157 5960 286 312 48 24 chr6 52379578 52379703 -130035539 + L1ME LINE L1 5507 5634 -487 26 30 0 0 chr6 52380988 52381021 -130034221 + AT_rich Low_complexity Low_complexity 1 33 0 827 306 136 17 chr6 52381071 52381541 -130033701 + L2 LINE L2 1156 1681 -1633 867 238 68 8 chr6 52381560 52381825 -130033417 + Charlie4 DNA MER1_type 39 319 -1642 2404 169 23 4 chr6 52382325 52382797 -130032445 - L1MD1 LINE L1 0 6242 5762 707 178 20 26 chr6 52382814 52382966 -130032276 + FRAM SINE Alu 17 167 -9 6200 231 72 26 chr6 52382974 52385602 -130029640 - L1MD1 LINE L1 -486 5756 3002 483 221 37 0 chr6 52385651 52385803 -130029439 + L1M4 LINE L1 2231 2387 -3759 1345 71 21 3 chr6 52386135 52386347 -130028895 - L1P LINE L1 -743 5403 5208 * 3420 33 0 0 chr6 52386346 52386745 -130028497 + L1P2 LINE L1 5400 5798 -356 274 326 65 36 chr6 52387195 52387333 -130027909 - L2 LINE L2 -4 3268 3127 556 277 208 15 chr6 52387748 52388084 -130027158 + L2 LINE L2 2907 3307 -6 1084 51 0 0 chr6 52388978 52389116 -130026126 + L1PA5 LINE L1 6016 6153 -1 508 276 91 60 chr6 52389524 52389915 -130025327 - MLT1E LTR MaLR -162 431 1 1630 213 29 24 chr6 52390470 52390547 -130024695 - LTR52 LTR ERVL -3 418 343 354 45 0 0 chr6 52390547 52390591 -130024651 + (CA)n Simple_repeat Simple_repeat 2 45 0 1630 213 29 24 chr6 52390591 52390922 -130024320 - LTR52 LTR ERVL -78 343 8 1786 165 0 49 chr6 52390922 52391249 -130023993 - AluJo SINE Alu 0 312 2 571 252 96 88 chr6 52391411 52392027 -130023215 + L1ME4a LINE L1 5452 6072 -49 306 293 110 103 chr6 52393435 52393862 -130021380 + L1M2 LINE L1 981 1410 -5439 312 48 0 0 chr6 52395966 52396008 -130019234 + (T)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr6 52396651 52396686 -130018556 + (T)n Simple_repeat Simple_repeat 1 35 0 417 316 36 14 chr6 52396724 52396863 -130018379 + MER5A DNA MER1_type 46 187 -2 2233 108 0 19 chr6 52397281 52397460 -130017782 - AluSx SINE Alu -3 309 137 1716 127 8 0 chr6 52397460 52397696 -130017546 - AluSg SINE Alu -12 298 61 2233 108 0 19 chr6 52397696 52397831 -130017411 - AluSx SINE Alu -175 137 1 358 268 42 87 chr6 52397868 52397996 -130017246 + L1MC4 LINE L1 7790 7922 -120 1701 198 0 0 chr6 52397996 52398284 -130016958 + AluJo SINE Alu 1 288 -24 2263 111 3 0 chr6 52398294 52398601 -130016641 + AluSq SINE Alu 1 308 -5 358 268 42 87 chr6 52398601 52398726 -130016516 + L1MC4 LINE L1 7931 8042 0 24 67 0 0 chr6 52398799 52398844 -130016398 + AT_rich Low_complexity Low_complexity 1 45 0 241 246 79 44 chr6 52399611 52399725 -130015517 - L2 LINE L2 -19 3253 3136 397 344 38 11 chr6 52399758 52399941 -130015301 - L2 LINE L2 -216 3056 2869 216 232 18 0 chr6 52400315 52400371 -130014871 + (TA)n Simple_repeat Simple_repeat 1 57 0 353 284 78 17 chr6 52400424 52400540 -130014702 + MIR SINE MIR 18 140 -122 2164 123 0 3 chr6 52400685 52400993 -130014249 + AluSx SINE Alu 2 308 -4 26 30 0 0 chr6 52400997 52401030 -130014212 + AT_rich Low_complexity Low_complexity 1 33 0 336 351 119 5 chr6 52401030 52401232 -130014010 + L2 LINE L2 2595 2819 -495 228 35 0 0 chr6 52401338 52401367 -130013875 + (TG)n Simple_repeat Simple_repeat 2 30 0 380 217 58 0 chr6 52401383 52401503 -130013739 + L1ME4a LINE L1 5305 5431 -2377 348 333 100 21 chr6 52401511 52401833 -130013409 + L1ME4a LINE L1 5532 5889 -254 350 267 59 74 chr6 52402086 52402288 -130012954 - L2 LINE L2 0 3313 3115 430 274 0 0 chr6 52402376 52402482 -130012760 + L1MC4a LINE L1 5506 5611 -510 505 233 60 0 chr6 52402502 52402635 -130012607 + L1MC4a LINE L1 5764 5904 -1904 729 253 87 8 chr6 52402706 52402947 -130012295 + MIR SINE MIR 2 261 -1 213 242 88 33 chr6 52403905 52403996 -130011246 + MIR SINE MIR 45 140 -122 627 286 90 8 chr6 52404854 52405088 -130010154 + MIR SINE MIR 5 257 -5 210 299 23 35 chr6 52405175 52405262 -130009980 - MIR SINE MIR -85 123 38 26 30 0 0 chr6 52406069 52406102 -130009140 + AT_rich Low_complexity Low_complexity 1 33 0 411 296 179 77 chr6 52406273 52406518 -130008724 + L2 LINE L2 2246 2465 -849 2473 60 0 3 chr6 52406518 52406816 -130008426 + AluY SINE Alu 2 298 -13 411 296 179 77 chr6 52406816 52407091 -130008151 + L2 LINE L2 2465 2819 -495 347 327 88 85 chr6 52407209 52407515 -130007727 + L2 LINE L2 2966 3272 0 331 292 82 115 chr6 52407721 52408122 -130007120 + L2 LINE L2 2232 2619 -695 738 302 135 46 chr6 52408135 52409016 -130006226 + L2 LINE L2 2271 3250 -63 196 411 0 8 chr6 52409037 52409161 -130006081 + L2 LINE L2 2646 2768 -546 1601 156 35 8 chr6 52409175 52409432 -130005810 + AluSx SINE Alu 1 264 -48 1853 100 36 7 chr6 52409539 52409820 -130005422 - AluY SINE Alu -22 289 1 225 196 0 0 chr6 52410725 52410771 -130004471 + (TATAA)n Simple_repeat Simple_repeat 3 48 0 251 346 122 14 chr6 52410911 52411125 -130004117 - L2 LINE L2 -211 3061 2825 953 291 54 42 chr6 52411241 52411688 -130003554 - L2 LINE L2 -696 2618 2167 307 343 83 0 chr6 52411842 52411950 -130003292 - L2 LINE L2 -30 3242 3126 497 281 107 25 chr6 52411989 52412185 -130003057 - MIR SINE MIR -16 246 35 441 333 142 32 chr6 52412291 52412904 -130002338 - L2 LINE L2 -212 3060 2366 571 337 30 5 chr6 52413013 52413215 -130002027 - MIR SINE MIR -54 208 2 185 227 0 45 chr6 52413267 52413311 -130001931 + L3 LINE CR1 1437 1478 -99 315 0 0 0 chr6 52416902 52416937 -129998305 + (TA)n Simple_repeat Simple_repeat 1 35 0 493 329 36 0 chr6 52417176 52417313 -129997929 - MIR3 SINE MIR -27 181 40 33 78 0 26 chr6 52417817 52417932 -129997310 + AT_rich Low_complexity Low_complexity 1 112 0 2462 70 3 0 chr6 52418160 52418460 -129996782 + AluY SINE Alu 1 301 -10 233 404 40 26 chr6 52418801 52418926 -129996316 + MIR3 SINE MIR 21 150 -58 1896 119 44 10 chr6 52418926 52419220 -129996022 + AluSx SINE Alu 1 304 -8 233 404 40 26 chr6 52419220 52419245 -129995997 + MIR3 SINE MIR 150 173 -35 1540 128 122 3 chr6 52420625 52420952 -129994290 + L1MB4 LINE L1 5812 6177 -3 3525 241 70 21 chr6 52420969 52422232 -129993010 + L1M4 LINE L1 3714 5037 -1109 259 298 132 0 chr6 52422705 52422819 -129992423 - MIR SINE MIR -55 207 79 1094 218 186 26 chr6 52422959 52423123 -129992119 - L1MD2 LINE L1 -2 6357 6221 261 0 0 0 chr6 52423123 52423152 -129992090 + (TG)n Simple_repeat Simple_repeat 2 30 0 1094 218 186 26 chr6 52423152 52423456 -129991786 - L1MD2 LINE L1 -138 6221 5814 1279 186 104 3 chr6 52423563 52424010 -129991232 - L1MD2 LINE L1 -578 5664 5176 1420 68 0 21 chr6 52424337 52424528 -129990714 + L1PA7 LINE L1 5968 6154 0 21 71 0 0 chr6 52425197 52425239 -129990003 + AT_rich Low_complexity Low_complexity 1 42 0 198 0 0 0 chr6 52425435 52425457 -129989785 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 318 316 110 76 chr6 52426803 52427303 -129987939 - L1M2 LINE L1 -5888 961 445 1843 146 4 0 chr6 52431821 52432095 -129983147 - AluJb SINE Alu -3 309 35 23 33 0 0 chr6 52432627 52432657 -129982585 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 52432737 52432758 -129982484 + AT_rich Low_complexity Low_complexity 1 21 0 250 293 34 14 chr6 52432804 52432951 -129982291 - L1ME4a LINE L1 -100 6021 5872 234 353 150 0 chr6 52433856 52434009 -129981233 + L2 LINE L2 2565 2740 -574 336 286 0 11 chr6 52434081 52434172 -129981070 - L1MC4 LINE L1 -1339 6703 6614 * 361 298 0 0 chr6 52434140 52434234 -129981008 + L1MC4 LINE L1 6614 6707 -1335 2290 90 3 0 chr6 52434237 52434537 -129980705 - AluY SINE Alu -10 301 1 180 286 12 83 chr6 52434557 52434641 -129980601 + MER5B DNA MER1_type 59 136 -42 1865 164 0 3 chr6 52435230 52435517 -129979725 + AluJo SINE Alu 1 286 -26 25 51 0 0 chr6 52435517 52435556 -129979686 + AT_rich Low_complexity Low_complexity 1 39 0 227 264 31 37 chr6 52435958 52436121 -129979121 - L1ME4a LINE L1 -22 6099 5938 630 258 3 67 chr6 52436274 52436573 -129978669 - L1ME LINE L1 -5337 1206 927 309 278 58 64 chr6 52437169 52437479 -129977763 - L1ME LINE L1 -5935 595 34 298 254 79 8 chr6 52437499 52437625 -129977617 - L1ME4a LINE L1 -294 5827 5693 614 304 34 38 chr6 52440147 52440384 -129974858 - MIR SINE MIR -16 246 11 307 304 143 0 chr6 52440430 52440591 -129974651 + MIR SINE MIR 68 251 -11 342 0 0 0 chr6 52442065 52442103 -129973139 + (TC)n Simple_repeat Simple_repeat 1 38 0 288 0 0 0 chr6 52442102 52442134 -129973108 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 274 297 158 30 chr6 52443428 52443694 -129971548 + L2 LINE L2 1878 2177 -1137 2734 122 26 2 chr6 52444987 52445405 -129969837 + MSTA LTR MaLR 1 428 0 260 172 32 21 chr6 52447166 52447259 -129967983 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 555 300 206 52 chr6 52447360 52447690 -129967552 - L2 LINE L2 -1 3271 2891 331 206 0 0 chr6 52447906 52447974 -129967268 - MER116 DNA Mariner 0 80 13 419 281 130 14 chr6 52448460 52448606 -129966636 + MIR SINE MIR 48 210 -52 337 284 14 0 chr6 52448704 52448778 -129966464 - MIR SINE MIR -186 76 2 747 270 29 25 chr6 52449512 52449716 -129965526 + MIR SINE MIR 50 254 -8 996 228 34 0 chr6 52450091 52450297 -129964945 + MER20 DNA MER1_type 5 217 -2 423 270 132 32 chr6 52450303 52450483 -129964759 + MIR SINE MIR 13 211 -51 810 248 81 20 chr6 52450483 52450729 -129964513 + MIR SINE MIR 2 262 0 1120 179 28 9 chr6 52450937 52451149 -129964093 - MER58A DNA MER1_type 0 224 9 1180 296 40 16 chr6 52451341 52451787 -129963455 + LTR16B LTR ERVL 2 458 -6 2474 71 3 0 chr6 52452360 52452657 -129962585 - AluSp SINE Alu -14 299 2 747 206 46 27 chr6 52452919 52453144 -129962098 + MIR SINE MIR 17 250 -12 226 259 59 35 chr6 52454933 52455018 -129960224 - L2 LINE L2 -18 3254 3168 446 286 58 96 chr6 52455094 52455401 -129959841 + L2 LINE L2 2226 2504 -810 2351 96 0 19 chr6 52455401 52455714 -129959528 - AluSc SINE Alu -2 307 1 446 286 58 96 chr6 52455714 52455961 -129959281 + L2 LINE L2 2504 2759 -555 374 343 86 69 chr6 52456185 52456605 -129958637 + L2 LINE L2 2837 3263 -9 360 221 96 0 chr6 52457049 52457162 -129958080 + MER5A DNA MER1_type 5 129 -60 324 314 98 42 chr6 52457261 52457510 -129957732 + MIR SINE MIR 3 259 -3 2201 110 0 23 chr6 52458739 52459047 -129956195 - AluSx SINE Alu -11 301 1 180 344 104 10 chr6 52459053 52459149 -129956093 - L2 LINE L2 -18 3254 3150 181 250 0 0 chr6 52460990 52461030 -129954212 + MIR SINE MIR 220 259 -3 232 316 114 9 chr6 52461122 52461236 -129954006 + L2 LINE L2 3188 3313 0 1251 277 82 52 chr6 52461381 52462091 -129953151 + L2 LINE L2 2582 3313 0 233 295 3 25 chr6 52462249 52462337 -129952905 + MLT1J2 LTR MaLR 67 142 -308 397 231 64 50 chr6 52462375 52462582 -129952660 + MLT1I LTR MaLR 239 403 -6 264 296 69 63 chr6 52462595 52462754 -129952488 - L2 LINE L2 -2 3270 3111 2098 123 7 3 chr6 52462937 52463230 -129952012 - AluSc SINE Alu -15 294 1 2014 152 76 32 chr6 52463530 52464056 -129951186 - MER39B LTR ERV1 -4 649 1 1962 136 14 0 chr6 52464352 52464632 -129950610 - AluSx SINE Alu -18 294 11 1960 193 48 75 chr6 52465210 52465727 -129949515 + MLT1D LTR MaLR 1 503 -2 1085 176 57 14 chr6 52465928 52466138 -129949104 + MER20 DNA MER1_type 1 219 0 438 339 70 0 chr6 52466549 52466720 -129948522 + MIR SINE MIR 2 184 -78 474 267 188 0 chr6 52467187 52467352 -129947890 - MIR SINE MIR -37 225 30 1258 138 37 37 chr6 52467352 52467570 -129947672 - MER20 DNA MER1_type -1 218 1 520 262 78 66 chr6 52467668 52467912 -129947330 + L3 LINE CR1 963 1209 -368 216 338 12 0 chr6 52468040 52468120 -129947122 + L3 LINE CR1 1437 1517 -60 789 251 33 97 chr6 52468173 52468472 -129946770 - MER102b DNA MER1_type -10 331 52 23 0 0 0 chr6 52469364 52469387 -129945855 + AT_rich Low_complexity Low_complexity 1 23 0 189 217 22 22 chr6 52469514 52469560 -129945682 - MIR SINE MIR -113 149 104 949 261 160 28 chr6 52469631 52470056 -129945186 + L2 LINE L2 2632 3158 -155 375 23 0 0 chr6 52470056 52470100 -129945142 + (CA)n Simple_repeat Simple_repeat 2 45 0 949 261 160 28 chr6 52470100 52470280 -129944962 + L2 LINE L2 3158 3313 0 648 138 11 22 chr6 52472004 52472185 -129943057 + GA-rich Low_complexity Low_complexity 2 180 0 2054 129 0 7 chr6 52472222 52472531 -129942711 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr6 52473907 52473932 -129941310 + AT_rich Low_complexity Low_complexity 1 25 0 619 296 45 18 chr6 52473997 52474220 -129941022 + MIR SINE MIR 30 258 -4 1134 106 39 17 chr6 52474653 52474832 -129940410 + MER53 DNA DNA 7 189 0 1919 173 0 19 chr6 52475106 52475424 -129939818 - AluJb SINE Alu 0 312 1 237 267 27 0 chr6 52475693 52475768 -129939474 + HAL1 LINE L1 1815 1891 -616 337 307 36 36 chr6 52476169 52476335 -129938907 + HAL1b LINE L1 746 911 -437 349 262 57 8 chr6 52476441 52476563 -129938679 + HAL1 LINE L1 2245 2372 -135 225 220 40 0 chr6 52476594 52476644 -129938598 + (TTGGGG)n Simple_repeat Simple_repeat 2 53 0 246 289 171 0 chr6 52476997 52477073 -129938169 + L2 LINE L2 3151 3239 -33 804 264 54 13 chr6 52477297 52477536 -129937706 + MIR SINE MIR 12 260 -2 211 277 11 11 chr6 52477537 52477576 -129937666 + (TA)n Simple_repeat Simple_repeat 1 39 -55 1879 199 86 33 chr6 52477576 52478063 -129937179 - LTR10D LTR ERV1 0 513 1 211 277 11 11 chr6 52478063 52478117 -129937125 + (TA)n Simple_repeat Simple_repeat 38 94 0 359 321 31 0 chr6 52478913 52479072 -129936170 - L1ME LINE L1 -357 5764 5601 183 308 76 58 chr6 52479181 52479353 -129935889 + L2 LINE L2 2721 2895 -419 756 305 35 4 chr6 52479388 52479647 -129935595 - LTR33 LTR ERVL -2 519 253 238 259 17 0 chr6 52479785 52479843 -129935399 - LTR33 LTR ERVL -462 59 1 283 128 0 0 chr6 52480779 52480826 -129934416 - MER41B LTR ERV1 -107 528 482 287 301 24 0 chr6 52480863 52480946 -129934296 + MIR SINE MIR 168 252 -10 239 349 111 0 chr6 52481112 52481238 -129934004 + MIR SINE MIR 5 144 -118 427 309 138 6 chr6 52481339 52481520 -129933722 + MIR SINE MIR 14 218 -44 269 320 24 16 chr6 52481774 52481899 -129933343 + MIR3 SINE MIR 79 204 -4 1347 72 0 0 chr6 52482293 52482473 -129932769 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1600 318 113 31 chr6 52482905 52484109 -129931133 + L2 LINE L2 1968 3308 -5 359 315 7 47 chr6 52484113 52484262 -129930980 + GA-rich Low_complexity Low_complexity 6 148 0 465 103 0 0 chr6 52484367 52484435 -129930807 + (TTCTCC)n Simple_repeat Simple_repeat 5 72 0 23 33 0 0 chr6 52484733 52484763 -129930479 + AT_rich Low_complexity Low_complexity 1 30 0 2652 184 37 4 chr6 52485306 52485844 -129929398 - L1MB7 LINE L1 0 6184 5629 628 217 4 4 chr6 52485844 52486097 -129929145 + L1M4 LINE L1 4716 5069 -1077 520 233 0 0 chr6 52486092 52486195 -129929047 - L1MB7 LINE L1 -1175 4971 4869 * 521 130 65 9 chr6 52486201 52486309 -129928933 - L1MB7 LINE L1 -1410 4736 4623 288 306 8 25 chr6 52486670 52486791 -129928451 + MER5B DNA MER1_type 60 178 0 352 246 280 0 chr6 52486874 52486992 -129928250 + MER5A DNA MER1_type 9 159 -30 280 238 48 0 chr6 52487001 52487064 -129928178 + MER58 DNA MER1_type 1 66 -149 336 172 125 0 chr6 52487598 52487662 -129927580 + MER58 DNA MER1_type 2349 2420 0 195 284 105 56 chr6 52487702 52487864 -129927378 + L2 LINE L2 2926 3095 -177 749 200 53 0 chr6 52487921 52488071 -129927171 - MER5A DNA MER1_type -5 184 27 2019 138 62 213 chr6 52488205 52489059 -129926183 - Charlie1a DNA MER1_type 0 1455 731 1471 229 43 12 chr6 52489057 52489385 -129925857 - Charlie1a DNA MER1_type -1116 339 2 * 262 308 161 0 chr6 52489467 52489597 -129925645 - MIR SINE MIR 0 262 112 201 39 0 0 chr6 52489614 52489640 -129925602 + (CTTA)n Simple_repeat Simple_repeat 3 28 0 2210 124 0 0 chr6 52490258 52490556 -129924686 - AluSx SINE Alu -14 298 1 359 362 97 0 chr6 52490568 52490753 -129924489 + MIR SINE MIR 53 255 -7 453 339 97 10 chr6 52490892 52491087 -129924155 - L2 LINE L2 -515 2799 2588 431 342 49 16 chr6 52491093 52491336 -129923906 - MIR SINE MIR -6 256 6 436 248 0 51 chr6 52492291 52492428 -129922814 + MIR3 SINE MIR 76 205 -3 945 159 45 6 chr6 52493924 52494100 -129921142 - L1MB2 LINE L1 -3 6168 5986 199 313 137 63 chr6 52494631 52494995 -129920247 + L2 LINE L2 1803 2193 -1121 275 302 63 16 chr6 52495779 52495905 -129919337 - L2 LINE L2 -6 3307 3176 351 194 51 20 chr6 52496317 52496415 -129918827 + L1ME4a LINE L1 6021 6121 0 1355 173 67 13 chr6 52497313 52497625 -129917617 + Charlie5 DNA MER1_type 2296 2624 0 421 125 23 11 chr6 52498163 52498251 -129916991 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 238 289 106 10 chr6 52498424 52498528 -129916714 + MIR SINE MIR 123 236 -26 438 267 69 0 chr6 52498912 52499043 -129916199 - MIR SINE MIR -38 224 85 632 261 58 14 chr6 52499069 52499276 -129915966 + MIR SINE MIR 41 256 -6 8071 29 0 0 chr6 52499814 52500726 -129914516 - L1PA4 LINE L1 -10 6145 5233 225 338 14 0 chr6 52501033 52501104 -129914138 - L2 LINE L2 -14 3258 3187 1476 160 55 124 chr6 52501252 52501671 -129913571 + MLT1B LTR MaLR 1 390 0 2019 132 3 0 chr6 52502481 52502799 -129912443 + AluSg SINE Alu 1 310 0 30 59 0 0 chr6 52502863 52502914 -129912328 + AT_rich Low_complexity Low_complexity 1 51 0 374 278 39 41 chr6 52503072 52503214 -129912028 - MIR SINE MIR -64 144 5 182 262 175 10 chr6 52503209 52503312 -129911930 + L2 LINE L2 2926 3045 -227 * 2007 143 7 7 chr6 52503916 52504223 -129911019 - AluSx SINE Alu -5 307 1 227 209 15 30 chr6 52504416 52504483 -129910759 + L1M4 LINE L1 4207 4272 -1874 6382 227 69 22 chr6 52504706 52507431 -129907811 + L1ME1 LINE L1 3292 6152 -14 323 299 60 18 chr6 52507593 52507760 -129907482 - MER5B DNA MER1_type 0 178 5 1214 220 66 70 chr6 52507811 52508280 -129906962 + Charlie4a DNA MER1_type 25 491 -17 2006 120 0 31 chr6 52508462 52508754 -129906488 + AluSx SINE Alu 1 305 0 199 0 0 0 chr6 52508754 52508776 -129906466 + (TAAA)n Simple_repeat Simple_repeat 2 156 0 372 83 0 0 chr6 52508975 52509023 -129906219 + Alu SINE Alu 1 48 -253 252 77 0 39 chr6 52509020 52509072 -129906170 + AluSp/q SINE Alu 254 303 0 * 199 0 0 0 chr6 52509072 52509094 -129906148 + (A)n Simple_repeat Simple_repeat 1 180 0 180 152 0 0 chr6 52509360 52509393 -129905849 + (CA)n Simple_repeat Simple_repeat 2 34 0 323 274 59 66 chr6 52509621 52509803 -129905439 + MIR SINE MIR 2 187 -69 23 0 0 0 chr6 52509986 52510009 -129905233 + AT_rich Low_complexity Low_complexity 1 23 0 208 265 51 20 chr6 52510195 52510293 -129904949 + MIR SINE MIR 73 173 -89 629 321 5 5 chr6 52510338 52510525 -129904717 - MIR3 SINE MIR -19 189 3 984 226 39 0 chr6 52511474 52511731 -129903511 - L1MB7 LINE L1 -2 6182 5916 296 252 163 44 chr6 52511771 52511906 -129903336 - L2 LINE L2 0 3313 3163 270 308 130 60 chr6 52512118 52512465 -129902777 - L2 LINE L2 -376 2938 2568 6052 124 172 71 chr6 52512465 52513983 -129901259 + pTR5 LTR ERV1 768 2438 0 378 309 80 27 chr6 52514016 52514204 -129901038 + MIR SINE MIR 50 247 -15 379 222 11 0 chr6 52514359 52514449 -129900793 - Charlie4 DNA MER1_type -16 1945 1855 184 261 22 0 chr6 52514449 52514495 -129900747 - MER5B DNA MER1_type -130 48 2 818 310 114 35 chr6 52514578 52514754 -129900488 - L2 LINE L2 -4 3309 3148 1231 189 77 84 chr6 52514754 52515171 -129900071 - MLT2D LTR ERVL 0 414 1 818 310 114 35 chr6 52515171 52515711 -129899531 - L2 LINE L2 -165 3148 2525 1262 231 96 48 chr6 52516084 52516624 -129898618 - L1ME2 LINE L1 -9 6155 5590 204 226 19 0 chr6 52516741 52516794 -129898448 + (ATG)n Simple_repeat Simple_repeat 2 55 0 200 250 100 0 chr6 52516848 52516908 -129898334 - MIR SINE MIR -71 191 126 2853 85 40 2 chr6 52516912 52517357 -129897885 + L1P5 LINE L1 5278 5739 -412 1053 150 0 0 chr6 52517357 52517382 -129897860 + (TA)n Simple_repeat Simple_repeat 1 205 0 1053 150 0 0 chr6 52517382 52517562 -129897680 + (TA)n Simple_repeat Simple_repeat 1 180 0 323 315 0 0 chr6 52517590 52517679 -129897563 - L1MC4 LINE L1 -1340 6702 6614 * 354 253 0 22 chr6 52517618 52517709 -129897533 + L1MC4 LINE L1 6615 6703 -1339 2343 120 5 5 chr6 52517718 52517908 -129897334 + L1PB1 LINE L1 5784 5976 -175 2391 74 7 0 chr6 52517908 52518204 -129897038 + AluSc SINE Alu 1 298 -11 2343 120 5 5 chr6 52518204 52518381 -129896861 + L1PB1 LINE L1 5975 6151 0 478 140 25 6 chr6 52520102 52520259 -129894983 + (TTTAA)n Simple_repeat Simple_repeat 1 160 0 321 301 120 46 chr6 52520325 52520584 -129894658 - L2 LINE L2 -663 2651 2374 189 74 0 0 chr6 52520783 52520810 -129894432 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 260 338 68 8 chr6 52521388 52521521 -129893721 + MIR SINE MIR 21 161 -101 581 207 40 64 chr6 52521524 52521663 -129893579 - MLT1B LTR MaLR 0 390 249 2039 103 50 4 chr6 52521663 52521944 -129893298 - AluSc SINE Alu -15 294 1 581 207 40 64 chr6 52521944 52522120 -129893122 - MLT1B LTR MaLR -141 249 1 314 212 119 42 chr6 52522614 52522732 -129892510 + L1MC/D LINE L1 5614 5740 -2068 33 43 0 0 chr6 52523223 52523270 -129891972 + AT_rich Low_complexity Low_complexity 1 47 0 226 340 38 19 chr6 52524246 52524352 -129890890 - MIR SINE MIR -63 145 38 1338 214 67 17 chr6 52524367 52524723 -129890519 - L1ME1 LINE L1 -5 6161 5788 233 145 29 72 chr6 52524742 52524811 -129890431 - L1ME1 LINE L1 -347 5817 5752 517 252 8 8 chr6 52524853 52524972 -129890270 + L2 LINE L2 3139 3257 -15 192 40 0 0 chr6 52524973 52524998 -129890244 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 429 277 58 15 chr6 52525120 52525257 -129889985 + MIR SINE MIR 119 261 -1 21 0 0 0 chr6 52525554 52525575 -129889667 + AT_rich Low_complexity Low_complexity 1 21 0 184 376 30 30 chr6 52526091 52526224 -129889018 - L3b LINE CR1 -155 1428 1296 196 256 0 0 chr6 52526760 52526799 -129888443 + MER5A DNA MER1_type 53 91 -98 520 305 21 37 chr6 52526992 52527179 -129888063 + MER5A DNA MER1_type 1 184 -5 752 263 6 0 chr6 52527352 52527527 -129887715 + MIR SINE MIR 81 256 -6 767 213 106 24 chr6 52527600 52527807 -129887435 + MER58A DNA MER1_type 1 224 0 443 282 226 11 chr6 52528604 52528785 -129886457 - MIR SINE MIR -14 248 29 186 43 0 0 chr6 52529241 52529264 -129885978 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 572 237 128 19 chr6 52529635 52529740 -129885502 - MER63A DNA MER1_type -1515 173 44 186 43 0 0 chr6 52529740 52529763 -129885479 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 572 237 128 19 chr6 52529763 52529813 -129885429 - MER63A DNA MER1_type -1644 44 1 336 368 78 0 chr6 52529816 52530009 -129885233 - L1ME LINE L1 -384 5786 5579 691 308 53 24 chr6 52530022 52530954 -129884288 - L1ME LINE L1 -636 5528 4569 55 29 0 0 chr6 52531048 52531117 -129884125 + AT_rich Low_complexity Low_complexity 1 69 0 189 281 158 0 chr6 52532488 52532545 -129882697 - MIR SINE MIR -98 110 45 23 33 0 0 chr6 52532872 52532902 -129882340 + AT_rich Low_complexity Low_complexity 1 30 0 1068 253 45 73 chr6 52533134 52533312 -129881930 + L2 LINE L2 2359 2541 -773 2156 130 0 0 chr6 52533312 52533620 -129881622 - AluSg SINE Alu -2 308 1 1068 253 45 73 chr6 52533620 52533874 -129881368 + L2 LINE L2 2541 2777 -537 427 271 174 26 chr6 52533874 52534029 -129881213 + MER5A DNA MER1_type 4 181 -8 915 265 78 60 chr6 52534037 52534108 -129881134 + L2 LINE L2 2842 2910 -403 806 203 39 6 chr6 52534108 52534290 -129880952 + MER5A DNA MER1_type 2 189 0 915 265 78 60 chr6 52534290 52534682 -129880560 + L2 LINE L2 2910 3313 0 211 271 161 42 chr6 52535649 52535767 -129879475 + MIR3 SINE MIR 3 134 -74 1040 129 11 0 chr6 52535794 52535972 -129879270 + CT-rich Low_complexity Low_complexity 1 180 0 2298 120 0 0 chr6 52535981 52536289 -129878953 - AluSx SINE Alu -4 308 1 331 273 227 27 chr6 52538334 52538484 -129876758 - MER5A DNA MER1_type -1 188 9 262 177 32 0 chr6 52538643 52538705 -129876537 - L1MC4a LINE L1 -1400 6408 6345 4508 240 84 53 chr6 52538715 52541911 -129873331 - L1ME2 LINE L1 -19 6079 2789 963 271 50 11 chr6 52541939 52542316 -129872926 - L1ME2 LINE L1 -4410 1851 1460 21 36 0 0 chr6 52542328 52542356 -129872886 + AT_rich Low_complexity Low_complexity 1 28 0 348 289 0 0 chr6 52542656 52542760 -129872482 - L1ME3 LINE L1 -17 6145 6042 2213 239 61 22 chr6 52542766 52543624 -129871618 - L1ME2 LINE L1 -76 6088 5200 505 242 81 49 chr6 52543615 52544386 -129870856 - L1ME2 LINE L1 -4712 1368 526 * 712 305 26 55 chr6 52544633 52545053 -129870189 - L1ME2 LINE L1 -5617 453 46 212 322 51 34 chr6 52545301 52545419 -129869823 - L2 LINE L2 -31 3241 3122 655 178 23 8 chr6 52545428 52545557 -129869685 + FLAM_C SINE Alu 13 143 0 774 120 6 36 chr6 52545559 52545726 -129869516 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 * 795 136 7 13 chr6 52545718 52545872 -129869370 + (GAAA)n Simple_repeat Simple_repeat 4 156 0 11927 192 4 11 chr6 52547618 52551196 -129864046 - L1PB1 LINE L1 -157 6710 3156 231 200 0 0 chr6 52551199 52551249 -129863993 - L1PB1 LINE L1 -3857 3005 2956 734 189 0 42 chr6 52551263 52551454 -129863788 + L1 LINE L1 2849 3031 -3115 12253 107 115 7 chr6 52551481 52553580 -129861662 - L1PB1 LINE L1 -3913 2950 625 929 174 42 0 chr6 52553564 52553754 -129861488 - L1PB1 LINE L1 -6663 200 3 * 2169 100 0 4 chr6 52553943 52554249 -129860993 - AluSx SINE Alu 0 315 11 250 109 0 22 chr6 52554249 52554295 -129860947 - AluSp SINE Alu -139 164 120 230 284 102 34 chr6 52554300 52554388 -129860854 - L2 LINE L2 -23 3290 3197 256 248 0 28 chr6 52554550 52554659 -129860583 + GA-rich Low_complexity Low_complexity 4 109 0 723 151 20 48 chr6 52554741 52554887 -129860355 + L1PBa LINE L1 710 851 -6012 409 363 28 53 chr6 52554995 52555425 -129859817 - L2 LINE L2 -612 2702 2284 444 224 0 0 chr6 52556170 52556286 -129858956 + L1MB8 LINE L1 6063 6178 0 1422 209 32 11 chr6 52556865 52557148 -129858094 + AluJb SINE Alu 1 289 -23 1953 118 20 20 chr6 52558415 52558712 -129856530 - AluSq SINE Alu -16 297 1 896 195 52 0 chr6 52560137 52560291 -129854951 + MER58A DNA MER1_type 1 162 0 2146 127 0 3 chr6 52560567 52560866 -129854376 - AluSx SINE Alu -14 298 1 2138 132 0 3 chr6 52561351 52561661 -129853581 + AluSx SINE Alu 1 309 -3 209 200 33 33 chr6 52562389 52562509 -129852733 + (TTATA)n Simple_repeat Simple_repeat 4 123 0 * 301 194 28 10 chr6 52562495 52562788 -129852454 + (TA)n Simple_repeat Simple_repeat 1 298 0 452 194 32 0 chr6 52562843 52563184 -129852058 + (TA)n Simple_repeat Simple_repeat 1 352 0 455 188 0 0 chr6 52563646 52563731 -129851511 + MER58 DNA MER1_type 179 263 -78 1207 159 36 136 chr6 52564803 52565173 -129850069 - MER33 DNA MER1_type -8 355 1 193 292 82 99 chr6 52565193 52565364 -129849878 + MIR SINE MIR 41 208 -54 263 200 0 14 chr6 52567641 52567711 -129847531 + CT-rich Low_complexity Low_complexity 1 69 0 2280 80 0 20 chr6 52567999 52568300 -129846942 + AluSc SINE Alu 15 309 0 298 240 40 0 chr6 52570679 52570754 -129844488 + MER116 DNA Mariner 3 80 0 566 212 225 0 chr6 52570912 52571063 -129844179 + MIR SINE MIR 73 257 -5 414 261 92 0 chr6 52571745 52571864 -129843378 - L2 LINE L2 -4 3309 3180 947 116 0 0 chr6 52572000 52572129 -129843113 - AluSg/x SINE Alu -14 298 170 880 114 0 0 chr6 52572129 52572243 -129842999 - AluJb SINE Alu -197 115 2 468 48 0 0 chr6 52572443 52572506 -129842736 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 561 369 8 8 chr6 52574029 52574265 -129840977 - MIR SINE MIR 0 262 27 4170 232 36 15 chr6 52574459 52575532 -129839710 - L1MC4a LINE L1 -1 7807 6712 1938 116 36 36 chr6 52575911 52576214 -129839028 - AluSq SINE Alu -10 303 1 192 287 58 58 chr6 52576410 52576497 -129838745 - MIR SINE MIR -17 245 159 589 314 48 36 chr6 52576672 52576920 -129838322 + MIR SINE MIR 12 262 0 519 199 117 23 chr6 52577369 52577540 -129837702 + L2 LINE L2 3126 3312 -1 22 0 0 0 chr6 52577769 52577791 -129837451 + AT_rich Low_complexity Low_complexity 1 22 0 639 227 23 0 chr6 52578303 52578431 -129836811 - MER5A DNA MER1_type 0 189 59 289 300 36 36 chr6 52578554 52578694 -129836548 + MIR SINE MIR 12 151 -111 4965 164 70 50 chr6 52579905 52580954 -129834288 + MER11C LTR ERVK 1 1071 0 967 230 33 9 chr6 52581117 52581330 -129833912 - MER20 DNA MER1_type -1 218 1 295 268 71 36 chr6 52581815 52581927 -129833315 - MIR3 SINE MIR -26 182 67 186 43 0 0 chr6 52582357 52582380 -129832862 + (TG)n Simple_repeat Simple_repeat 2 24 0 1236 272 77 36 chr6 52582713 52582822 -129832420 + MLT1J LTR MaLR 26 129 -382 2048 122 62 46 chr6 52582822 52583191 -129832051 + THE1C LTR MaLR 1 375 0 1236 272 77 36 chr6 52583191 52583548 -129831694 + MLT1J LTR MaLR 129 511 0 493 307 52 33 chr6 52583707 52583919 -129831323 + MLT1K LTR MaLR 372 587 -1 544 300 110 13 chr6 52584482 52584719 -129830523 - MIR SINE MIR 0 262 3 738 308 25 8 chr6 52585393 52585633 -129829609 + MIR SINE MIR 14 257 -5 2925 120 40 7 chr6 52586403 52586853 -129828389 - MER4C LTR ERV1 0 465 1 233 250 0 0 chr6 52589645 52589693 -129825549 + (TATG)n Simple_repeat Simple_repeat 4 51 0 22 0 0 0 chr6 52590624 52590646 -129824596 + AT_rich Low_complexity Low_complexity 1 22 0 276 170 0 0 chr6 52591565 52591618 -129823624 + CT-rich Low_complexity Low_complexity 2 54 0 461 244 71 0 chr6 52593322 52593449 -129821793 - MIR SINE MIR -20 242 107 396 296 37 9 chr6 52595714 52595822 -129819420 - L2 LINE L2 0 3272 3162 288 0 0 0 chr6 52597839 52597871 -129817371 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 811 83 0 0 chr6 52597882 52597978 -129817264 - AluSq/x SINE Alu -184 129 34 485 127 0 0 chr6 52597978 52598041 -129817201 + AluSp/q SINE Alu 158 220 -93 474 274 109 46 chr6 52598080 52598365 -129816877 + LTR33 LTR ERVL 207 509 -12 630 192 0 8 chr6 52599311 52599431 -129815811 - MER94 DNA DNA -15 119 1 207 270 14 149 chr6 52599637 52599785 -129815457 + L2 LINE L2 3186 3313 0 183 384 0 27 chr6 52599924 52599997 -129815245 + L2 LINE L2 3000 3070 -202 234 0 0 0 chr6 52600725 52600751 -129814491 + (T)n Simple_repeat Simple_repeat 1 26 0 709 221 108 6 chr6 52601368 52601526 -129813716 + MER5B DNA MER1_type 5 178 0 2273 91 7 0 chr6 52602548 52602845 -129812397 - AluY SINE Alu -12 299 1 187 274 129 65 chr6 52602869 52602993 -129812249 + L2 LINE L2 3141 3272 0 417 397 22 22 chr6 52603509 52603693 -129811549 + L2 LINE L2 3080 3263 -9 186 318 16 0 chr6 52603924 52603987 -129811255 + L2 LINE L2 3250 3313 0 1236 301 77 27 chr6 52604015 52604679 -129810563 - L1MEd LINE L1 -5404 715 19 284 355 32 0 chr6 52605393 52605486 -129809756 - MIR3 SINE MIR -102 106 11 1115 193 41 16 chr6 52606179 52606422 -129808820 + MIR SINE MIR 14 262 0 290 278 193 40 chr6 52606628 52606851 -129808391 + MIR SINE MIR 6 262 0 321 295 90 26 chr6 52607540 52607696 -129807546 + L2 LINE L2 3148 3313 0 275 188 58 29 chr6 52607731 52607800 -129807442 + HSMAR1 DNA Mariner 1217 1287 0 25 65 0 0 chr6 52607954 52608000 -129807242 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr6 52608167 52608188 -129807054 + AT_rich Low_complexity Low_complexity 1 21 0 1602 178 34 24 chr6 52608188 52608481 -129806761 - AluJb SINE Alu -16 296 1 224 159 58 0 chr6 52608976 52609045 -129806197 + (TA)n Simple_repeat Simple_repeat 2 74 0 764 292 14 9 chr6 52610172 52610388 -129804854 + MIR SINE MIR 11 227 -35 329 334 156 25 chr6 52611058 52612084 -129803158 + L2 LINE L2 1513 2672 -642 1252 159 39 5 chr6 52612838 52613045 -129802197 + MER20 DNA MER1_type 6 219 0 180 278 41 82 chr6 52613421 52613518 -129801724 + MIR SINE MIR 127 219 -43 2087 109 27 14 chr6 52613524 52613842 -129801400 + AluSq SINE Alu 1 313 0 2067 133 0 3 chr6 52614622 52614923 -129800319 - AluSx SINE Alu -9 303 4 24 0 0 0 chr6 52614928 52614952 -129800290 + AT_rich Low_complexity Low_complexity 1 24 0 1303 46 17 0 chr6 52615247 52615421 -129799821 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 241 259 69 0 chr6 52615433 52615491 -129799751 + MIR SINE MIR 88 149 -113 485 192 133 8 chr6 52617041 52617161 -129798081 + L1MA10 LINE L1 6197 6331 -3 236 167 35 44 chr6 52617190 52617304 -129797938 + (TAA)n Simple_repeat Simple_repeat 1 113 0 1915 140 62 54 chr6 52617310 52617682 -129797560 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr6 52618517 52618538 -129796704 + AT_rich Low_complexity Low_complexity 1 21 0 402 338 7 14 chr6 52618581 52618720 -129796522 + MIR SINE MIR 18 155 -107 1505 184 0 32 chr6 52618830 52619107 -129796135 + AluJb SINE Alu 1 268 -44 341 252 84 8 chr6 52620297 52620416 -129794826 - LTR16B LTR ERVL 0 464 337 191 290 16 16 chr6 52621038 52621100 -129794142 + MIR SINE MIR 180 241 -21 2013 147 0 0 chr6 52621764 52622063 -129793179 - AluSx SINE Alu -13 299 1 1450 233 24 119 chr6 52622593 52622942 -129792300 + MLT1F LTR MaLR 4 290 -252 1940 122 36 10 chr6 52622942 52623245 -129791997 + AluJb SINE Alu 1 311 -1 1450 233 24 119 chr6 52623245 52623406 -129791836 + MLT1F LTR MaLR 290 465 -77 357 203 38 0 chr6 52623927 52624006 -129791236 + MLT1F LTR MaLR 483 564 -3 225 192 96 41 chr6 52625387 52625460 -129789782 - MER103 DNA DNA -1 165 89 226 347 8 25 chr6 52626723 52626844 -129788398 - L2 LINE L2 -629 2685 2567 367 114 11 69 chr6 52627176 52627351 -129787891 + (TA)n Simple_repeat Simple_repeat 2 166 0 216 174 54 22 chr6 52627418 52627510 -129787732 + (TATAG)n Simple_repeat Simple_repeat 2 96 0 226 175 0 18 chr6 52627556 52627613 -129787629 + L1MC4 LINE L1 6648 6703 -1339 266 106 45 15 chr6 52627756 52627822 -129787420 + (TA)n Simple_repeat Simple_repeat 1 68 0 188 307 40 13 chr6 52627823 52627898 -129787344 + L2 LINE L2 3118 3194 -78 1750 183 3 0 chr6 52628119 52628414 -129786828 - AluJb SINE Alu -16 296 1 2365 88 7 0 chr6 52628457 52628764 -129786478 + AluSx SINE Alu 1 309 -3 513 32 0 0 chr6 52630169 52630232 -129785010 + (CA)n Simple_repeat Simple_repeat 2 64 0 2231 107 0 0 chr6 52630491 52630789 -129784453 + AluSg SINE Alu 1 298 -12 635 323 136 27 chr6 52630909 52631277 -129783965 - L2 LINE L2 -18 3295 2888 387 246 181 25 chr6 52632627 52632826 -129782416 + MIR SINE MIR 5 234 -28 2143 119 3 0 chr6 52632918 52633211 -129782031 + AluY SINE Alu 1 294 -17 191 336 125 13 chr6 52633993 52634225 -129781017 + L2 LINE L2 2475 2732 -582 204 115 19 39 chr6 52634706 52634758 -129780484 + (TA)n Simple_repeat Simple_repeat 1 51 0 1860 168 40 3 chr6 52634761 52635088 -129780154 - MER2 DNA MER2_type 0 345 7 468 192 0 0 chr6 52635101 52635200 -129780042 + (CA)n Simple_repeat Simple_repeat 2 100 0 1928 76 111 0 chr6 52635597 52635859 -129779383 - AluSg SINE Alu -13 297 7 202 275 0 0 chr6 52636565 52636605 -129778637 + polypurine Low_complexity Low_complexity 1 40 0 189 94 0 0 chr6 52637678 52637710 -129777532 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr6 52638401 52638422 -129776820 + AT_rich Low_complexity Low_complexity 1 21 0 855 202 132 31 chr6 52638633 52638861 -129776381 + MIR SINE MIR 12 262 0 830 270 53 4 chr6 52638862 52639088 -129776154 + MIR SINE MIR 5 241 -21 626 199 64 0 chr6 52639572 52639713 -129775529 - MIR SINE MIR -99 163 14 276 220 68 0 chr6 52640549 52640608 -129774634 - MER5A DNA MER1_type -68 121 59 347 88 18 35 chr6 52641773 52641830 -129773412 - MADE1 DNA Mariner -24 56 1 441 271 103 14 chr6 52641842 52642056 -129773186 - MIR SINE MIR 0 262 30 183 254 32 48 chr6 52642160 52642223 -129773019 + MER5A DNA MER1_type 128 189 0 2614 189 10 8 chr6 52642260 52642741 -129772501 + L1MB2 LINE L1 5683 6164 -7 200 361 0 0 chr6 52643281 52643342 -129771900 + MER91A DNA MER1_type 2 62 -134 376 256 103 20 chr6 52643546 52643741 -129771501 + L1M4 LINE L1 2202 2412 -3734 591 298 11 5 chr6 52643838 52644026 -129771216 - MIR SINE MIR 0 262 74 905 168 0 0 chr6 52645395 52645526 -129769716 - FLAM_C SINE Alu -2 131 1 422 243 50 53 chr6 52645726 52645916 -129769326 + MIR SINE MIR 9 196 -62 182 133 0 44 chr6 52647285 52647330 -129767912 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 1116 208 6 105 chr6 52647714 52648061 -129767181 + AluJo SINE Alu 1 316 0 527 307 42 19 chr6 52648460 52648672 -129766570 - MIR SINE MIR -15 247 31 261 75 0 0 chr6 52648715 52648755 -129766487 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 499 222 26 34 chr6 52648796 52648913 -129766329 + MIR3 SINE MIR 54 169 -39 437 363 30 0 chr6 52649760 52649895 -129765347 - L2 LINE L2 0 3272 3134 907 222 23 71 chr6 52649964 52650230 -129765012 - MIR SINE MIR -1 261 9 597 261 24 86 chr6 52650255 52650572 -129764670 - L2 LINE L2 -191 3081 2781 633 318 62 46 chr6 52650574 52650699 -129764543 - L2 LINE L2 -1117 2197 2075 3158 127 4 9 chr6 52650699 52651149 -129764093 + MER83 LTR ERV1 1 448 0 633 318 62 46 chr6 52651149 52651237 -129764005 - L2 LINE L2 -1239 2075 1990 2104 133 0 3 chr6 52651237 52651545 -129763697 + AluSq SINE Alu 1 307 -6 633 318 62 46 chr6 52651545 52651767 -129763475 - L2 LINE L2 -1324 1990 1754 2287 122 0 0 chr6 52652865 52653177 -129762065 - AluSx SINE Alu 0 312 1 252 0 0 0 chr6 52653310 52653338 -129761904 + (TAA)n Simple_repeat Simple_repeat 1 28 0 269 312 83 18 chr6 52654576 52654685 -129760557 + L2 LINE L2 2571 2686 -628 194 188 16 125 chr6 52655036 52655100 -129760142 - L2 LINE L2 0 3272 3216 * 501 245 240 20 chr6 52655091 52655287 -129759955 - MIR SINE MIR -23 239 1 839 274 35 35 chr6 52655404 52655663 -129759579 + MIR SINE MIR 4 262 0 990 50 7 21 chr6 52655663 52655803 -129759439 - L1PA7 LINE L1 -126 6028 5891 943 70 0 16 chr6 52655803 52655931 -129759311 + L1PA6 LINE L1 6026 6151 -3 200 285 29 58 chr6 52656239 52656376 -129758866 - L2 LINE L2 -5 3308 3176 310 276 21 120 chr6 52656921 52657113 -129758129 - MER5B DNA MER1_type 0 178 6 2323 111 0 0 chr6 52658602 52658908 -129756334 + AluSx SINE Alu 1 306 -6 306 192 232 0 chr6 52660592 52660691 -129754551 - MIR3 SINE MIR 0 208 87 300 247 59 118 chr6 52660845 52660957 -129754285 + MIR SINE MIR 10 110 -152 2120 110 3 0 chr6 52660957 52661247 -129753995 - AluSx SINE Alu -21 291 1 300 247 59 118 chr6 52661247 52661304 -129753938 + MIR SINE MIR 110 169 -93 428 319 101 58 chr6 52662164 52662440 -129752802 + L2 LINE L2 2965 3252 -20 2732 251 120 17 chr6 52662463 52663494 -129751748 + L2 LINE L2 2071 3206 -107 2025 125 4 4 chr6 52663496 52663776 -129751466 + AluSq SINE Alu 1 280 -33 334 243 34 32 chr6 52665381 52665483 -129749759 - MIR SINE MIR -95 113 8 6951 28 0 0 chr6 52666759 52667573 -129747669 + L1PA4 LINE L1 5388 6201 0 2214 104 3 0 chr6 52667807 52668142 -129747100 - AluSq SINE Alu 0 336 1 705 278 233 36 chr6 52668683 52668792 -129746450 + L2 LINE L2 1327 1413 -1901 1984 148 0 3 chr6 52668792 52669090 -129746152 + AluJb SINE Alu 1 297 -15 705 278 233 36 chr6 52669090 52669710 -129745532 + L2 LINE L2 1413 2200 -1114 230 247 62 41 chr6 52669716 52669813 -129745429 + L1MDa LINE L1 1900 2283 -4258 1122 108 0 0 chr6 52669816 52669964 -129745278 + AluSg/x SINE Alu 158 305 -7 645 181 8 8 chr6 52669986 52670113 -129745129 - Charlie4 DNA MER1_type -18 1943 1817 210 245 19 0 chr6 52672223 52672276 -129742966 + (CA)n Simple_repeat Simple_repeat 2 55 0 3001 231 104 10 chr6 52672330 52673017 -129742225 - MER97a DNA MER1_type? -8 886 112 2487 81 0 0 chr6 52673017 52673324 -129741918 - AluY SINE Alu -4 307 1 3001 231 104 10 chr6 52673324 52673434 -129741808 - MER97a DNA MER1_type? -782 112 14 285 183 94 0 chr6 52674141 52674227 -129741015 - MIR SINE MIR -61 147 89 434 241 112 0 chr6 52674580 52674696 -129740546 - L2 LINE L2 0 3313 3185 460 277 113 28 chr6 52674699 52675017 -129740225 + LTR33 LTR ERVL 2 346 -175 268 224 35 0 chr6 52675095 52675153 -129740089 + LTR33 LTR ERVL 462 521 0 232 266 64 11 chr6 52675158 52675243 -129739999 - L2 LINE L2 -131 3182 3090 363 23 0 0 chr6 52675243 52675287 -129739955 + (TG)n Simple_repeat Simple_repeat 2 45 0 2942 169 45 17 chr6 52675525 52676053 -129739189 - MER44D DNA MER2_type 0 605 8 180 305 127 34 chr6 52676685 52676803 -129738439 - MER5A DNA MER1_type -58 131 3 2227 92 10 3 chr6 52676898 52677191 -129738051 - AluSc SINE Alu -14 295 1 379 173 0 49 chr6 52677977 52678058 -129737184 + Tigger2 DNA MER2_type 1 77 -2641 472 243 14 56 chr6 52678079 52678223 -129737019 - MER8 DNA MER2_type -63 176 39 207 339 102 25 chr6 52678926 52679016 -129736226 - MER5A DNA MER1_type -6 183 85 265 143 270 0 chr6 52679016 52679079 -129736163 + MER5A DNA MER1_type 2 81 -108 1428 214 25 0 chr6 52679083 52679359 -129735883 + AluJo SINE Alu 10 292 -20 240 204 0 20 chr6 52679359 52679408 -129735834 + GA-rich Low_complexity Low_complexity 1 48 0 910 0 18 0 chr6 52679409 52679519 -129735723 + (GAAAA)n Simple_repeat Simple_repeat 3 114 0 594 185 8 62 chr6 52679528 52679658 -129735584 + MER5A DNA MER1_type 67 189 0 668 126 45 0 chr6 52679917 52680028 -129735214 - L1MA9 LINE L1 -3 6309 6194 496 279 62 92 chr6 52680089 52680394 -129734848 + L2 LINE L2 2977 3272 0 579 289 54 18 chr6 52680409 52680636 -129734606 + MIR SINE MIR 1 245 -17 180 111 0 0 chr6 52680790 52680817 -129734425 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 220 220 0 40 chr6 52680872 52680922 -129734320 + (CGTG)n Simple_repeat Simple_repeat 3 50 0 253 288 30 0 chr6 52681399 52681465 -129733777 - L2 LINE L2 0 3313 3246 351 237 111 87 chr6 52681598 52681805 -129733437 - MIR SINE MIR -50 212 1 1854 191 17 41 chr6 52682111 52682456 -129732786 - MER1B DNA MER1_type 0 337 1 235 377 19 0 chr6 52682525 52682631 -129732611 - MER5A DNA MER1_type -69 120 13 226 182 25 83 chr6 52682646 52682767 -129732475 - Charlie7 DNA MER1_type -56 2556 2443 23 0 0 0 chr6 52683341 52683364 -129731878 + AT_rich Low_complexity Low_complexity 1 23 0 269 271 71 24 chr6 52683462 52683547 -129731695 - L2 LINE L2 -15 3257 3169 2409 130 28 3 chr6 52683734 52684089 -129731153 - THE1B LTR MaLR 0 364 1 413 320 125 36 chr6 52684137 52684696 -129730546 - L2 LINE L2 -1135 2179 1571 206 294 0 0 chr6 52685441 52685492 -129729750 + (CA)n Simple_repeat Simple_repeat 2 52 0 432 37 0 0 chr6 52686493 52686547 -129728695 + (TG)n Simple_repeat Simple_repeat 2 55 0 969 268 108 30 chr6 52688110 52688509 -129726733 - L3 LINE CR1 -16 1561 1132 2231 93 0 0 chr6 52688525 52688834 -129726408 - AluSc SINE Alu 0 309 1 200 239 0 22 chr6 52689071 52689117 -129726125 - L3 LINE CR1 -958 619 575 231 349 23 31 chr6 52690090 52690219 -129725023 - MIR3 SINE MIR -76 132 5 324 348 36 0 chr6 52690346 52690458 -129724784 + L2 LINE L2 3143 3258 -14 212 196 43 0 chr6 52690548 52690594 -129724648 + L2 LINE L2 3266 3313 0 189 107 0 0 chr6 52690710 52690738 -129724504 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 195 317 17 0 chr6 52690739 52690799 -129724443 - L2 LINE L2 -12 3260 3200 389 199 215 44 chr6 52691168 52691321 -129723921 - MER5A DNA MER1_type -1 188 4 1983 135 17 0 chr6 52691361 52691650 -129723592 + AluSx SINE Alu 1 294 -18 474 49 0 0 chr6 52691651 52691712 -129723530 + (TA)n Simple_repeat Simple_repeat 1 61 0 832 256 17 11 chr6 52693546 52693722 -129721520 - MER45A DNA AcHobo -1 177 1 246 301 92 72 chr6 52694095 52694441 -129720801 + L2 LINE L2 2878 3230 -42 574 147 0 32 chr6 52694491 52694586 -129720656 + FLAM_A SINE Alu 1 92 -50 248 193 60 12 chr6 52694591 52694674 -129720568 + (TTAAA)n Simple_repeat Simple_repeat 3 89 0 287 290 28 9 chr6 52694954 52695061 -129720181 + GA-rich Low_complexity Low_complexity 4 112 0 871 198 51 30 chr6 52695974 52696236 -129719006 + LTR37A LTR ERV1 200 426 0 22 56 0 0 chr6 52696810 52696846 -129718396 + AT_rich Low_complexity Low_complexity 1 36 0 195 184 0 0 chr6 52697533 52697571 -129717671 + GA-rich Low_complexity Low_complexity 4 41 0 615 172 29 23 chr6 52697586 52697760 -129717482 + GA-rich Low_complexity Low_complexity 4 178 0 719 144 0 36 chr6 52697780 52697947 -129717295 + (GGGA)n Simple_repeat Simple_repeat 3 163 0 282 286 41 34 chr6 52698021 52698168 -129717074 + L1ME LINE L1 5509 5656 -510 23 33 0 0 chr6 52698197 52698227 -129717015 + AT_rich Low_complexity Low_complexity 1 30 0 265 172 129 75 chr6 52701603 52701696 -129713546 - MIR SINE MIR 0 262 165 291 129 208 20 chr6 52702643 52702744 -129712498 + L3 LINE CR1 645 764 -813 378 339 51 6 chr6 52703592 52703769 -129711473 - MIR SINE MIR 0 262 78 237 213 0 0 chr6 52703816 52703863 -129711379 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 310 248 148 10 chr6 52705850 52705951 -129709291 - L2 LINE L2 -5 3308 3194 432 307 42 6 chr6 52706086 52706252 -129708990 + MER5B DNA MER1_type 2 173 -5 538 281 57 17 chr6 52706305 52706721 -129708521 - LTR33 LTR ERVL 0 521 1 2421 87 3 0 chr6 52706832 52707131 -129708111 - AluSp SINE Alu -13 300 1 488 350 106 4 chr6 52707217 52707454 -129707788 - MIR SINE MIR -1 261 1 535 238 19 0 chr6 52707753 52707858 -129707384 + MER81 DNA DNA 1 107 -7 198 294 29 0 chr6 52708220 52708288 -129706954 + L2 LINE L2 3150 3219 -94 337 254 146 55 chr6 52708828 52709048 -129706194 - MIR SINE MIR 0 262 23 1598 104 0 5 chr6 52709198 52709410 -129705832 + AluSc SINE Alu 93 303 -6 471 87 0 0 chr6 52710862 52710931 -129704311 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 1894 169 75 65 chr6 52710931 52711411 -129703831 + MER31A LTR ERV1 1 485 0 480 281 16 8 chr6 52711417 52711545 -129703697 - L2 LINE L2 0 3272 3144 183 301 0 84 chr6 52712331 52712414 -129702828 - MIR3 SINE MIR -2 206 131 318 67 0 0 chr6 52712515 52712560 -129702682 + (TG)n Simple_repeat Simple_repeat 1 45 0 481 268 82 65 chr6 52714125 52714431 -129700811 - L1ME4a LINE L1 -214 5907 5597 1994 100 37 0 chr6 52714603 52714872 -129700370 + AluSx SINE Alu 22 300 -12 366 317 90 15 chr6 52714979 52715243 -129699999 + L2 LINE L2 2740 3017 -296 6323 118 25 13 chr6 52715274 52716510 -129698732 - L1PB1 LINE L1 0 6151 4911 236 254 0 51 chr6 52716520 52716579 -129698663 + L2 LINE L2 3245 3300 -13 632 192 8 17 chr6 52716961 52717081 -129698161 - MLT1D LTR MaLR -328 177 59 417 296 122 35 chr6 52717157 52717387 -129697855 + MIR SINE MIR 13 262 0 471 316 13 7 chr6 52717661 52717813 -129697429 + MIR SINE MIR 107 259 -3 357 24 0 0 chr6 52717963 52718005 -129697237 + (TC)n Simple_repeat Simple_repeat 1 42 0 1995 191 40 70 chr6 52718007 52718477 -129696765 - MLT1D LTR MaLR -49 456 1 484 332 81 16 chr6 52718490 52718737 -129696505 + L2 LINE L2 994 1256 -2058 758 270 125 12 chr6 52719069 52719414 -129695828 - L2 LINE L2 -126 3187 2804 3497 228 50 22 chr6 52719618 52719729 -129695513 - MER21B LTR ERV1 -11 852 746 3240 98 14 2 chr6 52719729 52720158 -129695084 + MER57B LTR ERV1 1 434 0 3497 228 50 22 chr6 52720158 52720834 -129694408 - MER21B LTR ERV1 -117 746 43 458 203 0 0 chr6 52720834 52720908 -129694334 - MER21B LTR ERV1 -771 92 19 38519 89 8 8 chr6 52721672 52727822 -129687420 - L1PA6 LINE L1 0 6154 11 1860 174 0 3 chr6 52727865 52728176 -129687066 + AluJo SINE Alu 1 310 -2 763 192 0 8 chr6 52728234 52728364 -129686878 - AluJo SINE Alu -177 135 7 336 161 0 0 chr6 52728437 52728499 -129686743 + (TA)n Simple_repeat Simple_repeat 1 62 0 8896 155 26 11 chr6 52728516 52730604 -129684638 - L1MA8 LINE L1 -61 6230 4099 2238 89 0 0 chr6 52730604 52730921 -129684321 + AluY SINE Alu 1 317 0 8896 155 26 11 chr6 52730921 52731235 -129684007 - L1MA8 LINE L1 -2192 4099 3791 627 310 59 34 chr6 52731452 52731691 -129683551 + MIR SINE MIR 9 253 -9 191 311 33 0 chr6 52732286 52732347 -129682895 - L2 LINE L2 0 3272 3210 210 328 172 8 chr6 52732373 52732501 -129682741 + L2 LINE L2 3123 3271 -1 188 324 132 55 chr6 52732667 52732886 -129682356 - L2 LINE L2 -458 2856 2621 180 163 0 0 chr6 52733094 52733137 -129682105 + A-rich Low_complexity Low_complexity 1 43 0 2360 68 10 3 chr6 52733215 52733507 -129681735 - AluSp SINE Alu -19 294 1 1947 126 3 26 chr6 52734095 52734405 -129680837 - AluSg SINE Alu -7 303 1 2383 101 0 0 chr6 52734588 52734886 -129680356 + AluSx SINE Alu 1 298 -14 258 336 37 0 chr6 52735505 52735612 -129679630 + L2 LINE L2 3156 3266 -6 529 257 0 78 chr6 52735858 52736037 -129679205 - MIR3 SINE MIR -6 202 38 465 346 64 2 chr6 52736220 52736439 -129678803 - MIR SINE MIR -13 249 21 302 294 101 17 chr6 52737160 52737279 -129677963 - L2 LINE L2 -5 3267 3139 208 372 15 75 chr6 52737691 52737890 -129677352 - L2 LINE L2 -529 2785 2599 538 212 80 22 chr6 52738032 52738169 -129677073 - MLT1J LTR MaLR -301 210 66 625 23 57 0 chr6 52738395 52738483 -129676759 + (TTTTC)n Simple_repeat Simple_repeat 2 94 0 225 94 0 0 chr6 52738487 52738519 -129676723 + (TC)n Simple_repeat Simple_repeat 2 33 0 1872 119 94 0 chr6 52738519 52738805 -129676437 - AluSq SINE Alu 0 313 1 4037 92 2 4 chr6 52738887 52739399 -129675843 + MER9 LTR ERVK 1 511 0 4572 55 11 3 chr6 52739399 52739963 -129675279 + HERVK9 LTR ERVK 1 568 -5348 13718 49 15 2 chr6 52739964 52741603 -129673639 + HERVK9 LTR ERVK 1113 2772 -3144 1325 45 0 0 chr6 52741610 52741767 -129673475 + HERVK9 LTR ERVK 3711 3867 -2049 5036 70 0 0 chr6 52741853 52742467 -129672775 + HERVK9 LTR ERVK 5303 5916 0 3637 107 2 4 chr6 52742467 52742971 -129672271 + MER9 LTR ERVK 1 503 -8 740 23 0 0 chr6 52743158 52743245 -129671997 - AluYb8 SINE Alu -1 317 231 31 0 0 0 chr6 52745148 52745179 -129670063 + AT_rich Low_complexity Low_complexity 1 31 0 553 197 0 61 chr6 52745239 52745371 -129669871 + MER5B DNA MER1_type 52 175 -3 23 0 0 0 chr6 52746108 52746131 -129669111 + GC_rich Low_complexity Low_complexity 1 23 0 1695 166 27 10 chr6 52747989 52748284 -129666958 + AluJo SINE Alu 1 300 -12 577 308 84 22 chr6 52749063 52749290 -129665952 - MIR SINE MIR -20 242 2 245 282 13 13 chr6 52750229 52750307 -129664935 - MIR3 SINE MIR -6 202 125 346 314 144 11 chr6 52752660 52752848 -129662394 - MIR SINE MIR -13 249 37 2543 171 24 0 chr6 52753774 52754188 -129661054 - MSTB LTR MaLR -2 424 1 244 295 51 0 chr6 52754754 52754832 -129660410 - L2 LINE L2 -1 3312 3231 776 284 157 41 chr6 52754884 52755491 -129659751 - L2 LINE L2 -316 2997 2323 506 236 32 131 chr6 52755659 52755990 -129659252 - L1ME LINE L1 -440 5681 5382 21 0 0 0 chr6 52756116 52756137 -129659105 + AT_rich Low_complexity Low_complexity 1 21 0 2158 94 3 17 chr6 52756157 52756454 -129658788 - AluSx SINE Alu -19 293 1 339 282 31 43 chr6 52756708 52756866 -129658376 + MER103 DNA DNA 2 157 -9 1492 220 10 0 chr6 52756866 52757171 -129658071 - MER58B DNA MER1_type 0 341 34 1153 161 44 80 chr6 52757191 52757465 -129657777 - AluJo SINE Alu -9 303 40 2196 125 0 10 chr6 52757840 52758152 -129657090 + AluSx SINE Alu 1 309 -3 604 228 48 18 chr6 52758269 52758436 -129656806 - MIR SINE MIR -10 252 81 2892 171 29 69 chr6 52758502 52759298 -129655944 - MER21B LTR ERV1 -110 821 1 789 175 0 36 chr6 52760832 52760969 -129654273 + FLAM_C SINE Alu 1 132 -1 2209 75 4 4 chr6 52761221 52761524 -129653718 + AluSc SINE Alu 1 303 0 363 296 142 50 chr6 52761609 52761869 -129653373 - L2 LINE L2 0 3313 3030 287 247 26 0 chr6 52761880 52761957 -129653285 - L2 LINE L2 -527 2787 2709 242 209 0 0 chr6 52762095 52762138 -129653104 - MER58A DNA MER1_type 0 224 182 778 196 151 0 chr6 52762165 52762344 -129652898 - MER58A DNA MER1_type -18 206 1 253 249 73 45 chr6 52762824 52763001 -129652241 + L1ME4a LINE L1 5935 6116 -5 322 188 62 165 chr6 52763137 52763313 -129651929 - MER5A DNA MER1_type 0 189 32 273 259 102 19 chr6 52763216 52763324 -129651918 + MER5A DNA MER1_type 69 185 -4 * 200 184 0 26 chr6 52763856 52763894 -129651348 - L3 LINE CR1 -17 1560 1524 265 343 169 32 chr6 52764099 52764847 -129650395 + L2 LINE L2 2465 3309 -4 2286 118 0 0 chr6 52765646 52765951 -129649291 - AluSx SINE Alu -7 305 1 262 206 0 29 chr6 52767063 52767131 -129648111 + T-rich Low_complexity Low_complexity 4 69 0 2722 248 70 20 chr6 52767141 52768000 -129647242 - L1ME3A LINE L1 -34 6136 5238 447 232 38 43 chr6 52768065 52768250 -129646992 - Charlie2 DNA MER1_type -489 2373 2190 1887 148 3 26 chr6 52768325 52768629 -129646613 - AluSq SINE Alu 0 313 17 226 288 92 98 chr6 52768729 52768892 -129646350 - MIR SINE MIR -50 212 51 366 271 52 0 chr6 52769991 52770087 -129645155 + MIR3 SINE MIR 84 184 -24 206 266 115 71 chr6 52771998 52772111 -129643131 - MIR3 SINE MIR -53 155 38 964 253 121 54 chr6 52772586 52773108 -129642134 + L1ME4a LINE L1 5553 6109 -12 962 124 226 11 chr6 52773177 52773255 -129641987 - MER30 DNA MER1_type 0 230 170 2396 89 7 0 chr6 52773255 52773558 -129641684 - AluSp SINE Alu -7 306 2 962 124 226 11 chr6 52773558 52773665 -129641577 - MER30 DNA MER1_type -60 170 5 23 0 0 0 chr6 52773809 52773832 -129641410 + AT_rich Low_complexity Low_complexity 1 23 0 423 241 23 15 chr6 52773833 52773966 -129641276 - L1MC4 LINE L1 0 8042 7909 2146 126 0 0 chr6 52773984 52774278 -129640964 + AluSx SINE Alu 3 296 -16 233 175 63 0 chr6 52774326 52774389 -129640853 + (TA)n Simple_repeat Simple_repeat 1 67 0 358 299 65 52 chr6 52774417 52774648 -129640594 - L1MC4 LINE L1 -180 7862 7629 279 247 14 14 chr6 52776366 52776439 -129638803 + CT-rich Low_complexity Low_complexity 4 76 0 1122 196 25 0 chr6 52777106 52777310 -129637932 - MER3 DNA MER1_type 0 209 1 328 339 8 33 chr6 52777820 52777941 -129637301 + MIR3 SINE MIR 10 127 -81 702 233 134 5 chr6 52777970 52778172 -129637070 + MIR SINE MIR 7 234 -28 2091 113 7 0 chr6 52778371 52778689 -129636553 + AluSq SINE Alu 1 320 0 559 222 146 41 chr6 52778951 52779122 -129636120 - MER58A DNA MER1_type -35 189 1 386 259 99 23 chr6 52779500 52779631 -129635611 + MIR3 SINE MIR 15 155 -53 35124 79 7 10 chr6 52779993 52785560 -129629682 - L1PA6 LINE L1 0 6154 608 23 0 0 0 chr6 52786251 52786274 -129628968 + AT_rich Low_complexity Low_complexity 1 23 0 507 78 0 0 chr6 52786397 52786474 -129628768 + (TG)n Simple_repeat Simple_repeat 2 78 0 521 255 28 21 chr6 52786489 52786634 -129628608 - MIR3 SINE MIR -42 166 21 727 274 51 8 chr6 52787339 52787576 -129627666 - MIR SINE MIR -14 248 2 210 284 247 25 chr6 52787825 52787987 -129627255 + MIR SINE MIR 8 205 -57 2487 86 0 3 chr6 52788263 52788576 -129626666 + AluSx SINE Alu 1 312 0 770 228 84 23 chr6 52789974 52790189 -129625053 - MIR SINE MIR -17 245 18 264 30 0 0 chr6 52790257 52790290 -129624952 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2221 85 46 0 chr6 52791135 52791417 -129623825 - AluSx SINE Alu -17 295 1 409 255 13 34 chr6 52791772 52791921 -129623321 - MER104 DNA Tc2 0 180 35 3120 261 92 16 chr6 52791968 52793279 -129621963 + L2 LINE L2 1908 3313 0 311 360 43 0 chr6 52795650 52795814 -129619428 - MIR SINE MIR -66 142 16 2098 123 0 17 chr6 52795988 52796288 -129618954 + AluSx SINE Alu 1 295 -17 1048 203 77 0 chr6 52796660 52796867 -129618375 + MER58A DNA MER1_type 1 223 -1 1623 138 13 0 chr6 52796928 52797160 -129618082 + AluSx SINE Alu 5 239 -73 270 94 52 229 chr6 52797203 52797274 -129617968 + MADE1 DNA Mariner 1 52 -28 1827 153 34 3 chr6 52797274 52797568 -129617674 - AluSx SINE Alu -9 303 1 270 94 52 229 chr6 52797568 52797592 -129617650 + MADE1 DNA Mariner 52 79 -1 193 175 140 53 chr6 52798686 52798743 -129616499 - MIR SINE MIR -116 146 85 1850 148 7 0 chr6 52799133 52799416 -129615826 - AluJb SINE Alu -23 289 5 22 0 0 0 chr6 52799681 52799703 -129615539 + AT_rich Low_complexity Low_complexity 1 22 0 2289 112 0 3 chr6 52799900 52800203 -129615039 + AluSq SINE Alu 1 302 -11 315 309 164 40 chr6 52800658 52800859 -129614383 + MIR SINE MIR 10 235 -27 3195 145 17 28 chr6 52801200 52801731 -129613511 + Tigger7 DNA MER2_type 1 525 -208 430 153 0 14 chr6 52801725 52801797 -129613445 + Tigger7 DNA MER2_type 2496 2566 -21 * 267 133 0 0 chr6 52802514 52802559 -129612683 + (CA)n Simple_repeat Simple_repeat 1 45 0 525 271 26 26 chr6 52802573 52802724 -129612518 + MER5B DNA MER1_type 1 151 -27 454 274 188 19 chr6 52802962 52803170 -129612072 + MIR SINE MIR 15 257 -5 1878 120 133 3 chr6 52804518 52804834 -129610408 - MER46B DNA MER2_type 0 236 5 501 252 106 120 chr6 52805445 52806303 -129608939 - L1MEc LINE L1 -3986 2410 1565 186 397 80 26 chr6 52806385 52806536 -129608706 - L2 LINE L2 -38 3234 3076 400 279 42 24 chr6 52806601 52806766 -129608476 + MIR SINE MIR 45 212 -50 186 237 103 72 chr6 52807288 52807385 -129607857 + MIR SINE MIR 88 187 -75 264 213 79 5 chr6 52809166 52809238 -129606004 + MIR SINE MIR 46 121 -87 202 320 20 0 chr6 52809430 52809480 -129605762 - L2 LINE L2 -12 3260 3210 2288 139 147 5 chr6 52809550 52809925 -129605317 + MSTA LTR MaLR 1 428 0 619 134 96 33 chr6 52809934 52810094 -129605148 - MER104 DNA Tc2 0 180 1 435 19 0 0 chr6 52810183 52810235 -129605007 + (CA)n Simple_repeat Simple_repeat 2 53 0 301 322 40 67 chr6 52810281 52810430 -129604812 - L2 LINE L2 -4 3268 3124 2389 56 0 10 chr6 52811319 52811623 -129603619 - AluY SINE Alu -10 301 1 674 289 83 18 chr6 52811672 52811949 -129603293 + L1MC4a LINE L1 5617 5911 -1897 1803 149 0 0 chr6 52811949 52812210 -129603032 + AluSx SINE Alu 5 265 -47 214 186 0 23 chr6 52812268 52812311 -129602931 + (CATA)n Simple_repeat Simple_repeat 2 43 0 240 176 73 132 chr6 52813915 52814051 -129601191 - L1MC4 LINE L1 -6 8036 7909 466 234 153 8 chr6 52815082 52815206 -129600036 + MIR SINE MIR 10 151 -111 298 336 29 0 chr6 52815865 52815969 -129599273 - MIR3 SINE MIR -30 178 72 2286 116 3 0 chr6 52816347 52816658 -129598584 - AluSx SINE Alu 0 312 1 2111 110 0 0 chr6 52817592 52817874 -129597368 - AluSx SINE Alu -9 303 22 23 0 0 0 chr6 52818011 52818034 -129597208 + AT_rich Low_complexity Low_complexity 1 23 0 190 204 65 97 chr6 52819481 52819574 -129595668 + MIR SINE MIR 20 109 -99 442 297 20 7 chr6 52819595 52819743 -129595499 + L2 LINE L2 2546 2695 -619 572 256 69 31 chr6 52819927 52820055 -129595187 + MIR3 SINE MIR 20 157 -51 1884 165 76 22 chr6 52820055 52820425 -129594817 - MLT1B LTR MaLR 0 390 1 572 256 69 31 chr6 52820425 52820456 -129594786 + MIR3 SINE MIR 157 185 -23 27 62 0 0 chr6 52820705 52820753 -129594489 + AT_rich Low_complexity Low_complexity 1 48 0 218 95 0 71 chr6 52820794 52820836 -129594406 + (CCCCAG)n Simple_repeat Simple_repeat 5 43 0 1749 139 60 7 chr6 52821386 52821667 -129593575 + AluSq SINE Alu 1 296 -17 56 79 0 0 chr6 52821904 52822030 -129593212 + AT_rich Low_complexity Low_complexity 1 126 0 417 20 0 0 chr6 52822988 52823038 -129592204 + (TG)n Simple_repeat Simple_repeat 2 51 0 22 56 0 0 chr6 52823376 52823412 -129591830 + AT_rich Low_complexity Low_complexity 1 36 0 554 264 125 5 chr6 52825135 52825343 -129589899 - MIR SINE MIR -2 260 28 263 326 110 45 chr6 52825485 52825884 -129589358 + L3 LINE CR1 893 1317 -260 232 200 0 0 chr6 52825985 52826025 -129589217 - MER5A DNA MER1_type 0 189 150 191 271 0 51 chr6 52826145 52826204 -129589038 + MER5A DNA MER1_type 26 81 -108 366 278 117 43 chr6 52826212 52826311 -129588931 - MER5A DNA MER1_type -2 187 70 2087 93 43 13 chr6 52826311 52826612 -129588630 - AluSg SINE Alu 0 310 1 366 278 117 43 chr6 52826612 52826674 -129588568 - MER5A DNA MER1_type -119 70 14 538 289 8 0 chr6 52826827 52826955 -129588287 + MER5B DNA MER1_type 2 130 -48 217 294 0 88 chr6 52826965 52827010 -129588232 - MER5B DNA MER1_type -80 98 65 3430 106 35 27 chr6 52827010 52827042 -129588200 - L1PA13 LINE L1 -15 6148 6118 336 102 0 0 chr6 52827042 52827091 -129588151 + (TG)n Simple_repeat Simple_repeat 2 50 0 3430 106 35 27 chr6 52827091 52827576 -129587666 - L1PA13 LINE L1 -45 6118 5627 217 294 0 88 chr6 52827576 52827632 -129587610 - MER5B DNA MER1_type -113 65 6 183 347 116 21 chr6 52827646 52827741 -129587501 + MER5A DNA MER1_type 59 162 -27 1953 104 75 4 chr6 52829037 52829315 -129585927 + AluSp SINE Alu 1 298 -15 197 274 161 0 chr6 52829655 52829717 -129585525 - L2 LINE L2 0 3313 3242 381 265 77 17 chr6 52829731 52829848 -129585394 + L2 LINE L2 3190 3313 0 548 261 46 0 chr6 52830339 52830492 -129584750 - MIR SINE MIR -44 218 59 221 419 0 0 chr6 52830512 52830586 -129584656 - L2 LINE L2 -38 3234 3161 2570 198 55 45 chr6 52830745 52831334 -129583908 - L1MD2 LINE L1 -81 6278 5697 2934 83 5 0 chr6 52831334 52831709 -129583533 - L1PA13 LINE L1 -11 6152 5776 2268 118 0 6 chr6 52831709 52832023 -129583219 - AluSx SINE Alu 0 312 1 2570 198 55 45 chr6 52832023 52832415 -129582827 - L1MD2 LINE L1 -661 5698 5284 * 2572 204 2 0 chr6 52832414 52832924 -129582318 + L1P LINE L1 4780 5290 -856 1248 202 14 126 chr6 52833232 52833548 -129581694 - L1ME2 LINE L1 -335 5829 5574 4257 101 82 2 chr6 52833548 52834144 -129581098 - LTR9B LTR ERV1 0 644 1 1248 202 14 126 chr6 52834144 52834263 -129580979 - L1ME2 LINE L1 -590 5574 5443 1870 162 3 7 chr6 52834287 52834590 -129580652 + AluJb SINE Alu 1 302 -10 1737 133 108 0 chr6 52834642 52834921 -129580321 + AluSx SINE Alu 1 309 -3 3938 130 46 24 chr6 52834998 52835653 -129579589 - L1MB1 LINE L1 -7 6161 5493 10771 36 1 0 chr6 52835678 52836971 -129578271 - L1P LINE L1 -1979 4167 2874 11195 32 0 1 chr6 52836971 52838995 -129576247 + L1PA4 LINE L1 4127 6151 -4 1597 183 16 19 chr6 52838999 52839444 -129575798 - L1MB1 LINE L1 -690 5478 5042 * 24209 166 24 36 chr6 52839442 52844035 -129571207 - L1PA11 LINE L1 0 6489 1964 1913 172 3 0 chr6 52844035 52844338 -129570904 - AluSx SINE Alu -8 304 1 24209 166 24 36 chr6 52844338 52846271 -129568971 - L1PA11 LINE L1 -4525 1964 10 572 164 9 9 chr6 52846293 52846403 -129568839 - L1MB1 LINE L1 -1092 5054 4945 344 204 12 151 chr6 52846578 52846750 -129568492 - MER103 DNA DNA -13 153 6 202 209 0 23 chr6 52848080 52848123 -129567119 - L3 LINE CR1 -24 1553 1512 192 309 74 42 chr6 52848971 52849140 -129566102 + L2 LINE L2 2836 3011 -302 293 271 56 19 chr6 52849818 52849925 -129565317 + L1MC5 LINE L1 7815 7925 -36 314 222 25 0 chr6 52850322 52850403 -129564839 + MIR SINE MIR 134 216 -46 225 0 0 0 chr6 52852875 52852900 -129562342 + (TG)n Simple_repeat Simple_repeat 1 25 0 204 40 0 0 chr6 52852902 52852927 -129562315 + (GA)n Simple_repeat Simple_repeat 2 26 0 2731 150 20 49 chr6 52855222 52855710 -129559532 + L1PA16 LINE L1 5675 6148 -18 575 324 48 34 chr6 52855731 52856086 -129559156 + L2 LINE L2 1786 2145 -1169 370 333 43 48 chr6 52856604 52856835 -129558407 + MIR SINE MIR 20 249 -13 232 273 45 0 chr6 52858056 52858122 -129557120 - MIR SINE MIR -75 187 119 220 208 21 0 chr6 52858429 52858477 -129556765 - MIR3 SINE MIR -4 204 156 472 155 24 36 chr6 52858481 52858565 -129556677 - MER5A DNA MER1_type -1 188 106 377 281 70 53 chr6 52858530 52858701 -129556541 + MIR SINE MIR 17 190 -72 * 630 233 9 0 chr6 52858722 52858838 -129556404 - MER5A DNA MER1_type -71 118 2 862 271 32 20 chr6 52858852 52859103 -129556139 - MIR SINE MIR -4 258 5 220 326 53 21 chr6 52859140 52859235 -129556007 - MIR SINE MIR -74 134 37 2003 141 3 0 chr6 52859602 52859909 -129555333 + AluSx SINE Alu 1 308 0 267 254 133 77 chr6 52860134 52860257 -129554985 + MIR SINE MIR 1 139 -123 2674 183 28 24 chr6 52860257 52860760 -129554482 + MLT1D LTR MaLR 1 505 0 267 254 133 77 chr6 52860760 52860817 -129554425 + MIR SINE MIR 139 191 -71 894 231 29 34 chr6 52860930 52861138 -129554104 + MER63A DNA MER1_type 1 207 -3 209 336 16 56 chr6 52861317 52861442 -129553800 + L3b LINE CR1 1280 1399 -184 314 289 70 26 chr6 52861530 52861644 -129553598 - L2 LINE L2 -5 3267 3149 461 219 61 128 chr6 52861848 52862145 -129553097 - MLT1J LTR MaLR -143 368 92 1802 180 0 7 chr6 52862310 52862599 -129552643 - AluJb SINE Alu -25 287 1 681 174 23 159 chr6 52862855 52862988 -129552254 - L1ME2 LINE L1 -1 6163 6080 2065 140 3 0 chr6 52862988 52863288 -129551954 - AluSx SINE Alu -11 301 1 681 174 23 159 chr6 52863288 52863412 -129551830 - L1ME2 LINE L1 -84 6080 5941 18372 35 2 2 chr6 52863520 52866460 -129548782 - L1PA4 LINE L1 -1 6154 3214 360 111 0 0 chr6 52867108 52867162 -129548080 + (T)n Simple_repeat Simple_repeat 1 54 0 274 329 95 19 chr6 52867662 52867820 -129547422 + L2 LINE L2 2914 3083 -189 558 199 90 19 chr6 52867998 52868154 -129547088 + MER53 DNA DNA 23 189 0 496 332 102 8 chr6 52868340 52868575 -129546667 + MIR SINE MIR 6 262 0 372 327 75 15 chr6 52869178 52869377 -129545865 - MIR SINE MIR -32 230 20 466 243 0 19 chr6 52869387 52869490 -129545752 - MER5B DNA MER1_type 0 178 78 359 303 63 14 chr6 52870272 52870414 -129544828 + L2 LINE L2 3158 3306 -7 590 324 32 9 chr6 52870434 52870650 -129544592 + MIR SINE MIR 35 255 -7 271 169 108 0 chr6 52870942 52871007 -129544235 + L1ME2 LINE L1 6093 6164 0 1571 122 13 4 chr6 52871405 52871643 -129543599 + L1PA16 LINE L1 5580 5819 -347 2232 125 31 23 chr6 52871696 52872048 -129543194 + L1PA16 LINE L1 5812 6166 0 308 294 137 34 chr6 52873238 52873384 -129541858 - MER91A DNA MER1_type -27 169 9 1792 161 81 67 chr6 52873455 52873991 -129541251 + MLT2A2 LTR ERVL 1 554 0 24243 102 21 10 chr6 52873991 52877335 -129537907 + HERVL-A2-A2 LTR ERVL 1 3382 -2272 15907 99 5 3 chr6 52877330 52879431 -129535811 + HERVL-A2-A2 LTR ERVL 3550 5654 0 * 2215 154 39 31 chr6 52879431 52879973 -129535269 + MLT2A2 LTR ERVL 1 554 0 1642 245 140 11 chr6 52880660 52881138 -129534104 - MLT1F LTR MaLR 0 542 3 2067 146 3 0 chr6 52881181 52881476 -129533766 + AluSx SINE Alu 1 296 -16 820 290 73 89 chr6 52881527 52881605 -129533637 + L1MEd LINE L1 59 137 -5982 324 0 0 0 chr6 52881605 52881641 -129533601 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 820 290 73 89 chr6 52881641 52881959 -129533283 + L1MEd LINE L1 137 459 -5660 7732 41 14 0 chr6 52881959 52882930 -129532312 - L1PA6 LINE L1 0 6154 5183 820 290 73 89 chr6 52882930 52883133 -129532109 + L1MEd LINE L1 459 664 -5455 1714 111 0 12 chr6 52883133 52883386 -129531856 + L1MA2 LINE L1 6055 6304 0 820 290 73 89 chr6 52883386 52883693 -129531549 + L1MEd LINE L1 664 952 -5167 2039 154 0 0 chr6 52883701 52883999 -129531243 - AluJb SINE Alu -14 298 1 2093 132 3 0 chr6 52884029 52884324 -129530918 - AluSq SINE Alu -17 296 1 465 257 0 0 chr6 52884329 52884430 -129530812 + MER58 DNA MER1_type 2317 2417 -3 180 0 0 0 chr6 52884841 52884861 -129530381 + (T)n Simple_repeat Simple_repeat 1 20 0 364 261 48 67 chr6 52885271 52885436 -129529806 - MIR SINE MIR -28 234 73 2499 224 28 16 chr6 52886054 52886562 -129528680 + MLT2B1 LTR ERVL 3 516 -4 766 273 11 0 chr6 52886733 52886909 -129528333 + MER45A DNA AcHobo 1 178 0 298 299 10 10 chr6 52887981 52888078 -129527164 + LTR67 LTR ERVL 458 554 -3 1332 202 72 14 chr6 52888839 52889131 -129526111 + AluJb SINE Alu 1 309 -3 376 249 49 49 chr6 52889210 52889395 -129525847 - MLT1L LTR MaLR -8 607 423 2898 185 13 55 chr6 52889449 52889786 -129525456 - MER82 DNA MER2_type -61 592 291 2145 76 0 32 chr6 52889786 52890063 -129525179 - AluY SINE Alu -20 291 24 2898 185 13 55 chr6 52890063 52890342 -129524900 - MER82 DNA MER2_type -362 291 2 721 284 139 3 chr6 52890515 52890881 -129524361 + L1ME4a LINE L1 5669 6084 -37 535 252 15 8 chr6 52891850 52891981 -129523261 + MIR3 SINE MIR 71 202 -6 424 204 0 0 chr6 52893070 52893158 -129522084 - MIR SINE MIR -1 261 174 400 254 46 46 chr6 52893392 52893589 -129521653 - L1ME LINE L1 -556 5606 5410 310 259 56 9 chr6 52893594 52893814 -129521428 + L1ME LINE L1 5664 5932 -238 22 56 0 0 chr6 52893843 52893879 -129521363 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr6 52894031 52894069 -129521173 + AT_rich Low_complexity Low_complexity 1 38 0 404 335 90 12 chr6 52894206 52894373 -129520869 - MLT1I LTR MaLR -18 391 212 1864 174 0 3 chr6 52895512 52895817 -129519425 + AluSx SINE Alu 1 304 -8 184 330 53 32 chr6 52896159 52896253 -129518989 - L3b LINE CR1 -147 1436 1341 571 348 35 66 chr6 52896318 52896464 -129518778 + L2 LINE L2 2833 2982 -290 1778 111 0 0 chr6 52896464 52896698 -129518544 - AluSc SINE Alu -75 234 1 571 348 35 66 chr6 52896698 52897005 -129518237 + L2 LINE L2 2982 3272 0 5578 168 30 29 chr6 52897132 52898218 -129517024 - L1MD2 LINE L1 -18 6341 5254 356 209 76 76 chr6 52898224 52898382 -129516860 - MIR3 SINE MIR -50 158 1 966 107 20 0 chr6 52898487 52898636 -129516606 + L1MA5A LINE L1 6146 6297 0 1124 308 58 7 chr6 52898731 52899147 -129516095 + LTR16A LTR ERVL 14 450 0 3364 291 59 56 chr6 52899147 52899523 -129515719 + HERV16 LTR ERVL 1 375 -4621 2031 122 0 14 chr6 52899523 52899809 -129515433 + AluSx SINE Alu 2 283 -29 3364 291 59 56 chr6 52899809 52899877 -129515365 + HERV16 LTR ERVL 375 441 -4555 2144 110 0 0 chr6 52899877 52900158 -129515084 + AluSx SINE Alu 9 289 -23 3364 291 59 56 chr6 52900158 52900810 -129514432 + HERV16 LTR ERVL 441 1106 -3890 2223 66 10 23 chr6 52900810 52901113 -129514129 + AluY SINE Alu 1 299 -12 3364 291 59 56 chr6 52901113 52901563 -129513679 + HERV16 LTR ERVL 1106 1553 -3443 1922 287 44 6 chr6 52901600 52902147 -129513095 + HERV16 LTR ERVL 1669 2236 -2760 266 359 18 12 chr6 52902389 52902556 -129512686 + HERVL LTR ERVL 5175 5342 -312 562 286 6 18 chr6 52902722 52902893 -129512349 + LTR16A LTR ERVL 18 186 -264 872 154 0 0 chr6 52903353 52903476 -129511766 - FLAM_C SINE Alu -20 123 1 327 85 0 0 chr6 52903638 52903685 -129511557 + (TCCCC)n Simple_repeat Simple_repeat 5 51 0 1855 145 11 7 chr6 52903689 52903972 -129511270 - AluJb SINE Alu -28 284 1 1608 191 0 34 chr6 52904496 52904842 -129510400 + AluJo SINE Alu 1 312 0 309 381 88 5 chr6 52905226 52905441 -129509801 + MIR SINE MIR 24 256 -6 2171 119 0 22 chr6 52906615 52906935 -129508307 + AluSq SINE Alu 1 313 0 259 235 103 0 chr6 52906935 52907003 -129508239 + MIR SINE MIR 128 202 -60 833 262 130 81 chr6 52907004 52907535 -129507707 - LTR67 LTR ERVL 0 557 1 1111 174 11 16 chr6 52909299 52909489 -129505753 - MER5A DNA MER1_type 0 189 1 411 241 283 5 chr6 52909519 52909710 -129505532 + MIR SINE MIR 5 248 -14 223 258 16 32 chr6 52909868 52909930 -129505312 - MIR SINE MIR -195 67 7 300 301 75 45 chr6 52910252 52910654 -129504588 + L1M4 LINE L1 3521 3934 -2212 258 32 0 0 chr6 52910991 52911022 -129504220 + (CA)n Simple_repeat Simple_repeat 2 32 0 1151 219 20 4 chr6 52911039 52911286 -129503956 + L1MEc LINE L1 51 301 -6095 1105 225 116 131 chr6 52911316 52911858 -129503384 + HAL1 LINE L1 948 1497 -1010 2202 120 0 7 chr6 52911858 52912159 -129503083 + AluSq SINE Alu 1 299 -14 1952 128 4 0 chr6 52912164 52912437 -129502805 + AluSx SINE Alu 1 274 -38 1167 79 11 6 chr6 52912445 52912623 -129502619 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1105 225 116 131 chr6 52912623 52912681 -129502561 + HAL1 LINE L1 1508 1565 -942 709 246 0 0 chr6 52912681 52912811 -129502431 + FLAM_A SINE Alu 1 130 -3 1105 225 116 131 chr6 52912811 52913200 -129502042 + HAL1 LINE L1 1565 1938 -569 1306 224 57 54 chr6 52913373 52913780 -129501462 - LTR37A LTR ERV1 0 426 19 1912 126 6 60 chr6 52914022 52914339 -129500903 - AluSx SINE Alu -12 300 1 645 112 0 0 chr6 52914454 52914543 -129500699 + LTR54B LTR ERV1 2 90 -408 679 183 60 9 chr6 52914570 52914850 -129500392 + LTR54 LTR ERV1 171 510 0 870 137 30 15 chr6 52915573 52915704 -129499538 + FLAM_C SINE Alu 1 133 0 222 254 55 0 chr6 52915878 52915933 -129499309 - MIR SINE MIR -90 172 115 2089 137 0 0 chr6 52916543 52916842 -129498400 + AluSx SINE Alu 1 299 -13 22 56 0 0 chr6 52916847 52916883 -129498359 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 52918234 52918255 -129496987 + AT_rich Low_complexity Low_complexity 1 21 0 218 245 78 49 chr6 52919551 52919653 -129495589 + L3b LINE CR1 1347 1451 -132 249 167 0 0 chr6 52919706 52919748 -129495494 + L1ME4a LINE L1 5562 5603 -518 261 234 328 8 chr6 52919761 52919889 -129495353 + MIR SINE MIR 85 253 -9 558 257 128 40 chr6 52919934 52920331 -129494911 + L1ME4a LINE L1 5666 6097 -24 33 0 0 0 chr6 52920335 52920368 -129494874 + AT_rich Low_complexity Low_complexity 1 33 0 269 228 237 26 chr6 52920487 52920601 -129494641 - L2 LINE L2 -16 3297 3160 2112 115 24 0 chr6 52921164 52921460 -129493782 - AluSx SINE Alu -9 303 1 2002 134 0 20 chr6 52921499 52921798 -129493444 - AluSx SINE Alu -19 293 1 195 276 0 17 chr6 52922099 52922157 -129493085 + L2 LINE L2 3257 3313 0 1518 166 65 11 chr6 52923097 52923375 -129491867 + AluSx SINE Alu 3 295 -17 775 274 138 43 chr6 52923721 52924469 -129490773 - L2 LINE L2 -27 3286 2464 2026 115 10 14 chr6 52926465 52926760 -129488482 - AluSx SINE Alu -18 294 1 416 198 2 4 chr6 52926848 52926942 -129488300 - MLT1A1 LTR MaLR -1 364 288 344 174 0 14 chr6 52926929 52926999 -129488243 + AluS SINE Alu 5 57 -246 * 515 291 115 0 chr6 52927580 52927745 -129487497 + MIR SINE MIR 8 191 -71 267 297 20 10 chr6 52927816 52927917 -129487325 + MIR SINE MIR 161 262 0 7314 152 39 26 chr6 52928315 52929596 -129485646 + L1MCa LINE L1 19 1319 -5107 2110 112 3 7 chr6 52929596 52929892 -129485350 + AluSq SINE Alu 13 307 -6 7314 152 39 26 chr6 52929892 52929930 -129485312 + L1MCa LINE L1 1319 1355 -5071 1154 239 16 27 chr6 52929929 52930442 -129484800 + L1M4 LINE L1 3988 4505 -1641 * 2316 71 0 3 chr6 52930442 52930725 -129484517 + AluY SINE Alu 1 282 -29 411 38 0 0 chr6 52930725 52930778 -129484464 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 1154 239 16 27 chr6 52930778 52931472 -129483770 + L1M4 LINE L1 4503 5291 -855 1672 188 21 9 chr6 52931520 52931983 -129483259 + L1MC1 LINE L1 4981 5450 -745 9147 106 6 29 chr6 52931983 52932208 -129483034 + HSMAR1 DNA Mariner 1 230 -1057 1644 149 0 76 chr6 52932208 52932510 -129482732 - L1PB1 LINE L1 -3 6148 5870 9147 106 6 29 chr6 52932510 52933601 -129481641 + HSMAR1 DNA Mariner 230 1287 0 4910 178 51 4 chr6 52933601 52934445 -129480797 + L1MC1 LINE L1 5449 6332 -1 2340 174 72 19 chr6 52934459 52934971 -129480271 - Charlie1 DNA MER1_type -2 2759 2221 2343 81 0 0 chr6 52934971 52935267 -129479975 - AluY SINE Alu -15 296 1 2222 62 0 38 chr6 52935311 52935602 -129479640 - AluSx SINE Alu -32 280 1 253 174 0 0 chr6 52935619 52935665 -129479577 - Charlie1 DNA MER1_type -2620 141 96 210 171 0 0 chr6 52935665 52935706 -129479536 + CT-rich Low_complexity Low_complexity 3 43 0 661 234 111 44 chr6 52936446 52936672 -129478570 + MIR SINE MIR 3 243 -19 210 301 22 37 chr6 52936881 52937017 -129478225 + CT-rich Low_complexity Low_complexity 3 136 0 296 315 113 48 chr6 52937164 52937475 -129477767 - MLT1J LTR MaLR -149 362 32 2401 54 3 10 chr6 52937481 52937779 -129477463 - AluY SINE Alu -15 296 1 400 286 90 97 chr6 52937885 52938175 -129477067 + L2 LINE L2 2942 3229 -43 723 249 127 5 chr6 52938281 52938486 -129476756 - MIR SINE MIR -28 234 5 23 0 0 0 chr6 52939262 52939285 -129475957 + AT_rich Low_complexity Low_complexity 1 23 0 1271 315 76 28 chr6 52939890 52940538 -129474704 + L3 LINE CR1 586 1264 -313 1219 155 16 72 chr6 52940862 52941113 -129474129 + AluJb SINE Alu 50 286 -26 2532 51 0 0 chr6 52941913 52942206 -129473036 - AluY SINE Alu -18 293 1 238 284 0 12 chr6 52943140 52943221 -129472021 - MIR SINE MIR -70 192 113 1732 172 0 24 chr6 52944435 52944731 -129470511 - AluJb SINE Alu -23 289 1 660 249 79 62 chr6 52944901 52945142 -129470100 - MER112 DNA MER1_type -9 251 7 1552 173 10 23 chr6 52945178 52945485 -129469757 - AluSx SINE Alu -9 303 1 504 270 173 22 chr6 52945624 52945850 -129469392 - MIR SINE MIR 0 262 3 664 166 6 166 chr6 52946338 52946513 -129468729 - MER58B DNA MER1_type 0 341 195 547 174 0 0 chr6 52947000 52947086 -129468156 - AluJo SINE Alu -8 304 219 814 164 7 21 chr6 52947094 52947234 -129468008 - AluJo SINE Alu -137 175 38 232 236 0 0 chr6 52947282 52947337 -129467905 + L1ME4a LINE L1 6067 6121 0 2084 130 0 16 chr6 52947706 52948013 -129467229 + AluSx SINE Alu 1 302 -10 252 265 98 29 chr6 52948195 52948297 -129466945 - L2 LINE L2 -1 3312 3204 363 291 89 25 chr6 52948311 52948469 -129466773 + MER5B DNA MER1_type 1 168 -10 266 154 0 0 chr6 52948487 52948526 -129466716 + 5S rRNA rRNA 2 40 -81 325 335 0 71 chr6 52948615 52948785 -129466457 - L2 LINE L2 -190 3082 2925 3081 156 11 0 chr6 52948848 52949310 -129465932 - MLT1C LTR MaLR 0 467 1 818 252 62 28 chr6 52949454 52949685 -129465557 - MIR SINE MIR -21 241 2 292 353 32 0 chr6 52949717 52949873 -129465369 + L2 LINE L2 2222 2382 -932 339 239 68 11 chr6 52950474 52950562 -129464680 + MIR3 SINE MIR 112 204 -4 233 350 133 22 chr6 52951764 52951990 -129463252 - L3b LINE CR1 -9 1574 1324 834 284 134 17 chr6 52952017 52952419 -129462823 - LTR33 LTR ERVL -53 468 20 896 122 8 0 chr6 52954026 52954157 -129461085 - AluSg/x SINE Alu -13 299 168 1740 261 77 31 chr6 52955065 52955416 -129459826 - MLT1F LTR MaLR 0 542 158 2066 148 3 0 chr6 52955416 52955719 -129459523 - AluSx SINE Alu -8 304 1 1740 261 77 31 chr6 52955719 52955885 -129459357 - MLT1F LTR MaLR -384 158 1 22 0 0 0 chr6 52956725 52956747 -129458495 + AT_rich Low_complexity Low_complexity 1 22 0 580 254 88 31 chr6 52956926 52957119 -129458123 + L2 LINE L2 3049 3252 -61 251 356 17 25 chr6 52957237 52957355 -129457887 - MIR SINE MIR -60 148 32 1958 142 0 43 chr6 52957695 52958019 -129457223 + AluSx SINE Alu 3 312 0 282 358 62 34 chr6 52958801 52958977 -129456265 + MIR SINE MIR 20 200 -62 243 201 180 2 chr6 52959131 52959207 -129456035 + MIR SINE MIR 65 148 -60 1813 141 7 17 chr6 52959217 52959508 -129455734 + AluSx SINE Alu 11 298 -14 298 362 7 35 chr6 52959839 52959980 -129455262 + MIR SINE MIR 13 149 -113 229 313 40 20 chr6 52960196 52960295 -129454947 + L2 LINE L2 3156 3256 -16 1338 271 22 55 chr6 52960402 52960859 -129454383 + L1ME LINE L1 137 578 -5627 225 0 0 0 chr6 52960878 52960903 -129454339 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 9992 89 6 0 chr6 52960903 52962949 -129452293 - L1PA7 LINE L1 -16 6138 4077 259 61 20 61 chr6 52962962 52963011 -129452231 - L1PA15 LINE L1 0 6165 6119 3210 52 0 0 chr6 52963013 52963381 -129451861 - L1PA8 LINE L1 -1 6171 5804 293 241 52 52 chr6 52963381 52963497 -129451745 + L1ME LINE L1 686 801 -5404 1940 137 11 7 chr6 52963528 52963813 -129451429 + AluSg SINE Alu 3 288 -22 472 272 127 13 chr6 52963820 52964048 -129451194 + L1ME LINE L1 1876 2129 -4267 2244 110 3 0 chr6 52965036 52965335 -129449907 - AluSq SINE Alu -13 300 1 585 194 111 33 chr6 52965465 52965645 -129449597 + MER96B DNA MER1_type? 8 201 -216 264 103 26 0 chr6 52965880 52965919 -129449323 + MER96B DNA MER1_type? 190 229 -188 436 230 95 8 chr6 52966134 52966260 -129448982 + MIR3 SINE MIR 15 151 -57 1673 171 64 9 chr6 52966352 52966698 -129448544 + MLT1A1 LTR MaLR 1 365 0 403 250 160 19 chr6 52967539 52967695 -129447547 + MIR SINE MIR 75 252 -10 2363 112 3 0 chr6 52967921 52968233 -129447009 - AluSp SINE Alu 0 313 1 676 218 30 15 chr6 52968299 52968501 -129446741 + L1MB1 LINE L1 5295 5499 -2309 2183 104 7 7 chr6 52968719 52969017 -129446225 + AluSx SINE Alu 1 298 -14 22 88 0 0 chr6 52969070 52969127 -129446115 + AT_rich Low_complexity Low_complexity 1 57 0 21 57 0 0 chr6 52969382 52969417 -129445825 + AT_rich Low_complexity Low_complexity 1 35 0 1063 211 24 52 chr6 52969681 52969789 -129445453 + MLT1G1 LTR MaLR 10 120 -410 1827 165 7 89 chr6 52969789 52969948 -129445294 + MLT1B LTR MaLR 1 172 -218 1388 177 30 37 chr6 52969948 52970248 -129444994 - AluJo SINE Alu -12 300 3 1827 165 7 89 chr6 52970248 52970513 -129444729 + MLT1B LTR MaLR 172 390 0 1837 198 27 14 chr6 52970518 52970887 -129444355 - MLT1A2 LTR MaLR 0 374 1 1063 211 24 52 chr6 52970887 52971087 -129444155 + MLT1G1 LTR MaLR 124 242 -288 745 239 21 21 chr6 52971106 52971294 -129443948 + MLT1G1 LTR MaLR 392 579 -16 899 233 123 40 chr6 52971294 52971693 -129443549 + LTR16A1 LTR ERVL 26 457 0 336 250 0 0 chr6 52971795 52971875 -129443367 + MIR SINE MIR 183 262 0 2136 120 10 0 chr6 52971892 52972192 -129443050 - AluSx SINE Alu -9 303 1 574 274 86 16 chr6 52972213 52972399 -129442843 - MIR SINE MIR -2 260 62 2505 158 23 19 chr6 52972702 52973177 -129442065 + L1MB1 LINE L1 5691 6167 -1 299 376 30 8 chr6 52973344 52973477 -129441765 + L2 LINE L2 3137 3272 0 2329 110 0 0 chr6 52975706 52976016 -129439226 - AluSg SINE Alu 0 310 1 22 35 0 0 chr6 52976295 52976324 -129438918 + AT_rich Low_complexity Low_complexity 1 29 0 262 235 15 0 chr6 52976351 52976419 -129438823 - L1MA9 LINE L1 -82 6230 6162 285 294 91 14 chr6 52976422 52976565 -129438677 + L2 LINE L2 1899 2052 -1262 528 271 214 21 chr6 52976778 52977166 -129438076 + L2 LINE L2 2067 2529 -785 327 49 0 0 chr6 52977257 52977298 -129437944 + (TG)n Simple_repeat Simple_repeat 2 42 0 365 175 237 9 chr6 52978357 52978471 -129436771 - MIR SINE MIR -6 256 117 2275 125 0 7 chr6 52978535 52978840 -129436402 + AluSx SINE Alu 1 303 -9 1396 127 84 32 chr6 52979440 52979748 -129435494 - MER33 DNA MER1_type 0 324 1 261 333 40 56 chr6 52980015 52980141 -129435101 - L3 LINE CR1 -358 1219 1096 497 224 83 14 chr6 52981511 52981665 -129433577 + MLT1G1 LTR MaLR 1 161 -388 2528 160 40 64 chr6 52981776 52982178 -129433064 - L1MD1 LINE L1 -8 6628 6245 2010 130 24 0 chr6 52982178 52982470 -129432772 + AluSx SINE Alu 3 301 -11 2528 160 40 64 chr6 52982470 52982692 -129432550 - L1MD1 LINE L1 -391 6245 6019 * 2705 220 34 40 chr6 52982688 52983534 -129431708 - L1MD1 LINE L1 -1801 4739 3899 6481 126 29 51 chr6 52983583 52983860 -129431382 - Tigger3b DNA MER2_type -1797 1231 949 2074 171 12 3 chr6 52983860 52984194 -129431048 - MER1B DNA MER1_type 0 337 1 6481 126 29 51 chr6 52984194 52984624 -129430618 - Tigger3b DNA MER2_type -2079 949 511 632 183 30 23 chr6 52984624 52984755 -129430487 + FLAM_A SINE Alu 1 132 -1 6481 126 29 51 chr6 52984755 52985304 -129429938 - Tigger3b DNA MER2_type -2517 511 2 1157 243 63 53 chr6 52985355 52986037 -129429205 - L1MD1 LINE L1 -2720 3820 3132 684 184 25 0 chr6 52986022 52986180 -129429062 - L1MD1 LINE L1 -4806 1734 1573 * 3757 200 11 10 chr6 52986191 52986793 -129428449 + MER44D DNA MER2_type 5 482 -2005 2287 133 88 10 chr6 52986793 52987190 -129428052 + MSTA LTR MaLR 1 428 0 3757 200 11 10 chr6 52987190 52987313 -129427929 + MER44D DNA MER2_type 482 603 -2 827 206 10 119 chr6 52987347 52987727 -129427515 - MLT1E2 LTR MaLR -65 499 200 812 206 34 82 chr6 52987701 52987968 -129427274 - MLT1E2 LTR MaLR -372 254 1 * 327 312 0 18 chr6 52988300 52988409 -129426833 + GA-rich Low_complexity Low_complexity 5 111 0 374 269 173 39 chr6 52988540 52988696 -129426546 - MER91A DNA MER1_type -19 177 1 654 257 124 9 chr6 52989964 52990174 -129425068 - MIR SINE MIR -21 241 8 552 270 99 10 chr6 52991145 52991338 -129423904 + MIR SINE MIR 45 252 -10 782 222 87 26 chr6 52992305 52992704 -129422538 + MLT2B1 LTR ERVL 5 481 -39 219 245 0 0 chr6 52992704 52992757 -129422485 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 255 100 0 0 chr6 52992761 52992801 -129422441 + MLT2B1 LTR ERVL 481 520 0 745 197 41 55 chr6 52993916 52994031 -129421211 - L1ME LINE L1 -364 5802 5690 1859 177 17 0 chr6 52994031 52994330 -129420912 - AluJb SINE Alu -8 304 1 745 197 41 55 chr6 52994330 52994432 -129420810 - L1ME LINE L1 -476 5690 5588 330 240 40 10 chr6 52994478 52994578 -129420664 - L1ME LINE L1 -574 5588 5486 22 0 0 0 chr6 52995395 52995417 -129419825 + AT_rich Low_complexity Low_complexity 1 22 0 7147 145 49 30 chr6 52995452 52995680 -129419562 - Ricksha DNA DNA 0 3246 3024 7206 48 5 0 chr6 52995680 52996722 -129418520 + L1PA7 LINE L1 5102 6147 -7 7147 145 49 30 chr6 52996722 52997808 -129417434 - Ricksha DNA DNA -222 3024 1902 2290 80 7 0 chr6 52997808 52998095 -129417147 - AluSx SINE Alu -23 289 1 7147 145 49 30 chr6 52998095 52998179 -129417063 - Ricksha DNA DNA -1344 1902 1821 1047 188 118 12 chr6 52998177 52998432 -129416810 - Ricksha DNA DNA -2957 289 8 * 321 293 55 50 chr6 52998505 52998905 -129416337 + L1MC/D LINE L1 4549 4950 -1196 7880 14 0 0 chr6 52998936 52999931 -129415311 - L1PA2 LINE L1 0 6155 5161 3812 31 0 0 chr6 52999931 53000407 -129414835 + L1PA2 LINE L1 4711 5186 -960 2071 140 0 0 chr6 53000964 53001264 -129413978 - AluSx SINE Alu -7 305 6 252 239 56 0 chr6 53001417 53001488 -129413754 - MLT1I LTR MaLR -14 395 321 693 291 130 16 chr6 53001525 53001972 -129413270 - L1MC/D LINE L1 -2051 5757 5260 969 225 19 0 chr6 53002494 53002707 -129412535 - Charlie8 DNA MER1_type -2200 217 1 276 261 46 0 chr6 53002871 53002936 -129412306 + L2 LINE L2 3205 3272 0 349 286 349 0 chr6 53004109 53004298 -129410944 + MIR SINE MIR 2 256 -6 2676 109 57 15 chr6 53004336 53004811 -129410431 + L1MA3 LINE L1 5811 6305 0 1733 173 14 3 chr6 53004837 53005132 -129410110 + AluJb SINE Alu 1 298 -14 199 333 27 0 chr6 53009737 53009812 -129405430 + MIR SINE MIR 76 152 -110 2300 65 0 28 chr6 53010396 53010711 -129404531 - AluY SINE Alu 0 307 1 2008 145 0 3 chr6 53010886 53011212 -129404030 - AluSq SINE Alu 0 313 3 1673 106 19 0 chr6 53012186 53012442 -129402800 + L1MA5A LINE L1 6037 6297 0 2198 112 0 0 chr6 53012733 53013038 -129402204 + AluSx SINE Alu 1 305 -7 1583 201 10 26 chr6 53013081 53013390 -129401852 + AluJo SINE Alu 1 304 -8 307 330 78 20 chr6 53013536 53013882 -129401360 + L1MC/D LINE L1 5272 5637 -2171 1420 115 7 82 chr6 53014489 53014626 -129400616 - L1PA16 LINE L1 -9 6157 6011 232 27 54 0 chr6 53014626 53014663 -129400579 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1914 131 3 0 chr6 53014663 53014945 -129400297 - AluSx SINE Alu -29 283 1 1420 115 7 82 chr6 53014945 53015075 -129400167 - L1PA16 LINE L1 -153 6013 5909 240 258 0 0 chr6 53016283 53016345 -129398897 + L2 LINE L2 3208 3269 -3 187 311 89 11 chr6 53016684 53016774 -129398468 - MIR3 SINE MIR -30 178 82 489 319 56 24 chr6 53018148 53018361 -129396881 - MIR SINE MIR -34 228 9 597 171 59 35 chr6 53018399 53018569 -129396673 - MER53 DNA DNA -13 176 3 32 0 0 0 chr6 53018691 53018723 -129396519 + AT_rich Low_complexity Low_complexity 1 32 0 1443 161 88 15 chr6 53018889 53019150 -129396092 + AluJb SINE Alu 3 282 -30 279 301 75 32 chr6 53019167 53019260 -129395982 - MER5A DNA MER1_type -48 141 45 906 61 14 7 chr6 53019506 53019654 -129395588 + (GA)n Simple_repeat Simple_repeat 1 149 0 2208 128 0 0 chr6 53019831 53020135 -129395107 + AluSx SINE Alu 1 304 -8 387 0 0 0 chr6 53020274 53020317 -129394925 + (CA)n Simple_repeat Simple_repeat 2 44 0 1091 187 15 10 chr6 53020974 53021177 -129394065 + MER3 DNA MER1_type 1 204 -5 488 331 22 28 chr6 53022006 53022184 -129393058 + MIR3 SINE MIR 28 204 -4 2056 291 84 11 chr6 53022223 53022973 -129392269 + L2 LINE L2 2137 2941 -373 351 332 112 10 chr6 53023220 53023416 -129391826 + MIR SINE MIR 28 243 -19 604 234 206 10 chr6 53023755 53023964 -129391278 - MIR SINE MIR 0 262 13 1068 263 73 29 chr6 53025085 53025469 -129389773 - MLT1I LTR MaLR 0 409 9 511 203 221 32 chr6 53025512 53025670 -129389572 + MER5A DNA MER1_type 1 188 -1 314 89 0 0 chr6 53026184 53026229 -129389013 + MADE1 DNA Mariner 36 80 0 1887 147 4 0 chr6 53026280 53026553 -129388689 + AluSx SINE Alu 1 274 -38 1797 164 0 31 chr6 53027783 53028101 -129387141 + AluJo SINE Alu 5 312 0 286 296 35 52 chr6 53028282 53028397 -129386845 - L2 LINE L2 -173 3099 2987 28 0 0 0 chr6 53029204 53029232 -129386010 + AT_rich Low_complexity Low_complexity 1 28 0 2052 134 3 3 chr6 53029233 53029531 -129385711 + AluSx SINE Alu 1 298 -14 180 200 0 0 chr6 53029885 53029925 -129385317 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 2087 108 10 36 chr6 53030376 53030682 -129384560 - AluSq SINE Alu -15 298 1 2375 90 0 3 chr6 53031179 53031491 -129383751 - AluY SINE Alu 0 311 1 1285 223 68 0 chr6 53031789 53032081 -129383161 - AluJo SINE Alu 0 312 1 24 53 0 0 chr6 53032106 53032144 -129383098 + AT_rich Low_complexity Low_complexity 1 38 0 818 162 8 0 chr6 53032144 53032261 -129382981 - AluSq/x SINE Alu -193 120 3 355 227 72 21 chr6 53032534 53032631 -129382611 + MIR SINE MIR 100 201 -61 943 240 21 42 chr6 53032631 53032919 -129382323 + L2 LINE L2 2183 2464 -850 1352 230 40 40 chr6 53032936 53033331 -129381911 - L1ME2 LINE L1 -9 6155 5761 815 316 125 40 chr6 53033331 53034015 -129381227 + L2 LINE L2 2451 3205 -108 220 196 0 0 chr6 53034635 53034681 -129380561 + (CA)n Simple_repeat Simple_repeat 2 47 0 212 281 135 31 chr6 53034766 53034855 -129380387 - L2 LINE L2 -3 3310 3209 1940 146 0 20 chr6 53034855 53034995 -129380247 + AluSq SINE Alu 1 142 -171 1944 130 0 31 chr6 53034995 53035317 -129379925 + AluSx SINE Alu 1 313 0 1940 146 0 20 chr6 53035317 53035476 -129379766 + AluSq SINE Alu 142 295 -18 368 288 118 7 chr6 53036653 53036806 -129378436 - MIR3 SINE MIR -13 195 26 2334 121 85 73 chr6 53036806 53037229 -129378013 - MSTA LTR MaLR 0 428 1 306 239 57 11 chr6 53037486 53037574 -129377668 + MIR3 SINE MIR 101 192 -16 2215 108 0 13 chr6 53037820 53038125 -129377117 + AluSg SINE Alu 1 301 -9 183 326 81 0 chr6 53038252 53038338 -129376904 + MIR SINE MIR 61 153 -109 332 289 11 0 chr6 53038355 53038445 -129376797 + MIR SINE MIR 100 190 -72 357 254 41 25 chr6 53038445 53038567 -129376675 + MIR SINE MIR 139 262 0 275 222 0 69 chr6 53039409 53039481 -129375761 + L2 LINE L2 3243 3309 -4 345 315 43 22 chr6 53039618 53039802 -129375440 + L1M4 LINE L1 2143 2330 -3816 182 268 14 70 chr6 53041030 53041101 -129374141 - L2 LINE L2 -2096 1218 1152 1217 186 10 0 chr6 53042340 53042539 -129372703 + MER58A DNA MER1_type 24 224 0 797 278 70 9 chr6 53042694 53042921 -129372321 + MIR SINE MIR 12 252 -10 196 263 237 35 chr6 53043386 53043500 -129371742 - L2 LINE L2 -10 3262 3126 2269 90 0 3 chr6 53044070 53044360 -129370882 + L1PB1 LINE L1 5861 6149 -2 26 30 0 0 chr6 53044566 53044599 -129370643 + AT_rich Low_complexity Low_complexity 1 33 0 291 276 66 13 chr6 53045185 53045261 -129369981 + L2 LINE L2 3193 3272 0 383 320 19 0 chr6 53046013 53046116 -129369126 + MIR3 SINE MIR 54 158 -50 4642 155 73 17 chr6 53046994 53047848 -129367394 - MER4D LTR ERV1 -1 872 1 230 217 43 0 chr6 53048654 53048700 -129366542 + L2 LINE L2 3244 3291 -22 25 0 0 0 chr6 53048807 53048832 -129366410 + AT_rich Low_complexity Low_complexity 1 25 0 294 324 90 14 chr6 53050190 53050335 -129364907 + MIR3 SINE MIR 43 198 -10 326 311 48 0 chr6 53051380 53051483 -129363759 - MIR SINE MIR -73 135 28 2082 281 21 5 chr6 53053250 53053809 -129361433 - MLT1E LTR MaLR -5 588 21 4384 246 106 64 chr6 53053822 53054296 -129360946 + HAL1 LINE L1 115 567 -1940 2311 142 13 38 chr6 53054296 53054669 -129360573 - THE1B LTR MaLR 0 364 1 4384 246 106 64 chr6 53054669 53056242 -129359000 + HAL1 LINE L1 567 2264 -243 1733 106 13 0 chr6 53056242 53056469 -129358773 - MER30 DNA MER1_type 0 230 1 4384 246 106 64 chr6 53056469 53056616 -129358626 + HAL1 LINE L1 2264 2403 -104 1294 254 61 24 chr6 53056819 53057245 -129357997 - L2 LINE L2 -978 2336 1895 11757 53 11 0 chr6 53057507 53059677 -129355565 - L1PA6 LINE L1 -1 6153 3968 271 253 21 53 chr6 53060954 53061049 -129354193 + MIR3 SINE MIR 110 201 -7 867 223 33 11 chr6 53061675 53061859 -129353383 + MER5A DNA MER1_type 2 189 0 286 299 281 0 chr6 53062087 53062254 -129352988 + MIR SINE MIR 49 262 0 347 338 164 10 chr6 53062326 53062533 -129352709 + MIR SINE MIR 9 247 -15 2711 154 28 4 chr6 53062671 53063418 -129351824 + L1MA4 LINE L1 5345 6300 0 264 122 0 0 chr6 53063983 53064024 -129351218 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 543 302 95 17 chr6 53064039 53064271 -129350971 + MIR SINE MIR 13 262 0 25 0 0 0 chr6 53064584 53064609 -129350633 + AT_rich Low_complexity Low_complexity 1 25 0 1723 156 3 57 chr6 53064625 53064939 -129350303 - AluJb SINE Alu -15 297 1 270 314 69 16 chr6 53064983 53065171 -129350071 + MARNA DNA Mariner 226 423 -163 2333 53 0 7 chr6 53066034 53066356 -129348886 - AluY SINE Alu 0 320 1 2042 90 34 0 chr6 53066522 53066788 -129348454 + AluSx SINE Alu 5 279 -33 237 119 0 0 chr6 53066788 53066830 -129348412 + (CAA)n Simple_repeat Simple_repeat 2 43 0 444 230 0 40 chr6 53067915 53068015 -129347227 - L2 LINE L2 0 3313 3218 878 103 0 41 chr6 53068606 53068751 -129346491 - L1PA14 LINE L1 -1 6160 6022 183 381 72 22 chr6 53068813 53068952 -129346290 - L2 LINE L2 -6 3266 3121 240 35 0 0 chr6 53069020 53069049 -129346193 + (TG)n Simple_repeat Simple_repeat 2 30 0 318 219 48 9 chr6 53071162 53071267 -129343975 - L1ME4a LINE L1 -265 5856 5748 1581 248 76 71 chr6 53071294 53071879 -129343363 + MER77 LTR ERV1 54 597 -8 426 53 0 0 chr6 53072109 53072166 -129343076 + (TG)n Simple_repeat Simple_repeat 2 58 0 2264 86 0 23 chr6 53072645 53072949 -129342293 - AluY SINE Alu -14 297 1 822 202 60 0 chr6 53073409 53073577 -129341665 + MER45A DNA AcHobo 1 178 0 1711 169 45 10 chr6 53073870 53074160 -129341082 - AluJb SINE Alu -12 300 1 1281 115 0 60 chr6 53074207 53074441 -129340801 - L1MA4A LINE L1 -421 5882 5663 508 266 98 40 chr6 53074572 53074745 -129340497 + MIR SINE MIR 53 235 -27 721 300 67 8 chr6 53076033 53076286 -129338956 - MER115 DNA AcHobo 0 693 426 565 331 6 0 chr6 53076403 53076560 -129338682 + MER115 DNA AcHobo 269 426 -267 21 57 0 0 chr6 53077403 53077438 -129337804 + AT_rich Low_complexity Low_complexity 1 35 0 322 398 0 0 chr6 53078404 53078517 -129336725 + MIR3 SINE MIR 50 162 -46 254 322 41 34 chr6 53078527 53078673 -129336569 - MER117 DNA MER1_type -19 178 32 218 379 21 58 chr6 53079455 53079695 -129335547 - L2 LINE L2 -62 3210 2980 2025 149 0 3 chr6 53080315 53080617 -129334625 - AluSx SINE Alu -9 303 3 6386 219 87 28 chr6 53080663 53082793 -129332449 + Zaphod DNA AcHobo 1682 3936 -95 1394 218 20 56 chr6 53082798 53083101 -129332141 + MLT2C1 LTR ERVL 5 291 -106 1312 198 70 56 chr6 53083101 53083460 -129331782 - MLT1A1 LTR MaLR -1 364 1 1394 218 20 56 chr6 53083460 53083564 -129331678 + MLT2C1 LTR ERVL 291 397 0 382 154 110 22 chr6 53083564 53083655 -129331587 + MER115 DNA AcHobo 595 693 0 204 333 69 0 chr6 53134301 53134388 -129280854 + L2 LINE L2 3148 3240 -32 1819 151 10 3 chr6 53134550 53134841 -129280401 + AluJo SINE Alu 17 309 -3 17709 29 3 0 chr6 53134841 53137721 -129277521 + L1PA4 LINE L1 3263 6152 -3 236 204 0 0 chr6 53137724 53137773 -129277469 + A-rich Low_complexity Low_complexity 1 49 0 514 335 120 34 chr6 53138405 53138773 -129276469 - L2 LINE L2 -602 2712 2284 1332 214 62 37 chr6 53138773 53138919 -129276323 + MLT1A1 LTR MaLR 1 142 -223 1691 196 10 16 chr6 53138919 53139231 -129276011 + AluJb SINE Alu 2 311 -1 1332 214 62 37 chr6 53139231 53139439 -129275803 + MLT1A1 LTR MaLR 142 364 -1 514 335 120 34 chr6 53139439 53139595 -129275647 - L2 LINE L2 -1030 2284 2143 1695 210 40 0 chr6 53139692 53140063 -129275179 + MSTD LTR MaLR 3 388 -8 1062 188 4 61 chr6 53141201 53141430 -129273812 - AluJo SINE Alu -80 232 17 308 179 179 28 chr6 53141450 53141556 -129273686 - L1MB8 LINE L1 0 6178 6057 378 212 0 0 chr6 53141673 53141758 -129273484 + L1MB7 LINE L1 5742 5826 -358 * 785 229 53 18 chr6 53141742 53142026 -129273216 + L1M4 LINE L1 2756 3049 -3097 2243 114 0 3 chr6 53142318 53142615 -129272627 + AluSx SINE Alu 1 296 -16 2390 71 0 0 chr6 53142619 53142914 -129272328 + AluY SINE Alu 1 295 -16 28 0 0 0 chr6 53142921 53142949 -129272293 + AT_rich Low_complexity Low_complexity 1 28 0 4605 235 68 26 chr6 53142949 53143826 -129271416 + L1M4 LINE L1 3096 3935 -2211 2199 119 0 19 chr6 53143826 53144138 -129271104 + AluSq SINE Alu 1 306 -7 4605 235 68 26 chr6 53144138 53144999 -129270243 + L1M4 LINE L1 3935 4907 -1239 790 193 0 6 chr6 53144992 53145163 -129270079 - L1MC3 LINE L1 -2 7783 7614 * 1321 184 0 35 chr6 53145163 53145391 -129269851 + AluJo SINE Alu 1 220 -92 606 203 0 74 chr6 53145393 53145519 -129269723 + L1MB7 LINE L1 5993 6106 -78 1847 168 10 10 chr6 53145519 53145828 -129269414 + AluJo SINE Alu 1 309 -3 606 203 0 74 chr6 53145828 53145864 -129269378 + L1MB7 LINE L1 6106 6143 -41 2306 118 0 0 chr6 53146222 53146528 -129268714 + AluSx SINE Alu 1 306 -6 264 40 60 0 chr6 53146696 53146746 -129268496 + (TG)n Simple_repeat Simple_repeat 2 54 0 1088 169 0 84 chr6 53148361 53148574 -129266668 + AluJo SINE Alu 87 281 -31 207 0 0 0 chr6 53148579 53148602 -129266640 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 933 266 70 21 chr6 53148636 53148963 -129266279 + LTR16C LTR ERVL 75 417 -74 2153 187 39 104 chr6 53148965 53149707 -129265535 - LTR8A LTR ERV1 0 727 34 287 197 0 30 chr6 53149726 53149792 -129265450 + LTR16C LTR ERVL 424 487 -4 4317 167 20 65 chr6 53149809 53150694 -129264548 - L1MB4 LINE L1 -1 6179 5256 790 158 0 0 chr6 53150694 53150846 -129264396 - FLAM_C SINE Alu 0 152 1 4317 167 20 65 chr6 53150846 53151131 -129264111 - L1MB4 LINE L1 -924 5256 5061 639 206 38 23 chr6 53151131 53151262 -129263980 - FLAM_A SINE Alu 0 133 1 4317 167 20 65 chr6 53151262 53151381 -129263861 - L1MB4 LINE L1 -1119 5061 4938 1628 157 91 14 chr6 53153737 53154023 -129261219 - AluSx SINE Alu -4 308 1 2049 110 0 30 chr6 53154395 53154696 -129260546 + AluSx SINE Alu 1 292 -20 1589 171 0 18 chr6 53154748 53155034 -129260208 - AluJo SINE Alu -31 281 1 2358 121 28 6 chr6 53156295 53156651 -129258591 + THE1B LTR MaLR 1 364 0 1612 167 4 19 chr6 53156767 53157030 -129258212 + AluJo SINE Alu 38 296 -16 423 144 33 11 chr6 53157057 53157147 -129258095 + MER2 DNA MER2_type 101 192 -153 4083 152 13 15 chr6 53157148 53157864 -129257378 + MER72 LTR ERV1 9 722 0 4793 66 10 2 chr6 53158337 53158959 -129256283 - L1PA8 LINE L1 -3 6169 5543 1168 155 186 21 chr6 53159055 53159346 -129255896 + MER4B-int LTR ERV1 1044 1382 -4949 2326 189 59 104 chr6 53159449 53160210 -129255032 + LTR8A LTR ERV1 1 727 0 1322 129 50 43 chr6 53160214 53160243 -129254999 + MER4B-int LTR ERV1 1372 1399 -4932 1964 135 75 77 chr6 53160243 53160672 -129254570 - MSTA LTR MaLR 0 428 1 8777 137 36 84 chr6 53160672 53162407 -129252835 - MSTA-int LTR MaLR 0 1651 1 2035 120 33 147 chr6 53162408 53162890 -129252352 - MSTA LTR MaLR -1 427 1 1322 129 50 43 chr6 53162890 53163135 -129252107 + MER4B-int LTR ERV1 1398 1651 -4680 758 149 16 0 chr6 53163135 53163256 -129251986 + FRAM SINE Alu 46 168 -8 394 195 39 0 chr6 53163264 53163341 -129251901 + MER4B-int LTR ERV1 1856 1935 -4396 1174 97 62 0 chr6 53163343 53163519 -129251723 - MSTA LTR MaLR 0 428 242 287 230 126 0 chr6 53163521 53163608 -129251634 + LTR10A LTR ERV1 1 98 -511 1467 135 138 36 chr6 53163654 53163987 -129251255 + LTR10A LTR ERV1 181 547 -62 1265 167 39 0 chr6 53164001 53164235 -129251007 - MSTA LTR MaLR -185 243 1 1083 272 39 7 chr6 53164235 53164540 -129250702 + MER4B-int LTR ERV1 1933 2247 -4084 345 231 0 0 chr6 53164562 53164655 -129250587 + MER4B-int LTR ERV1 856 2726 -3220 2088 140 0 3 chr6 53164655 53164963 -129250279 + AluSx SINE Alu 1 307 -5 959 186 85 67 chr6 53165002 53165404 -129249838 + MER4B-int LTR ERV1 1181 2866 -3528 347 231 0 0 chr6 53165413 53165478 -129249764 + MER2 DNA MER2_type 280 344 -1 * 453 233 0 0 chr6 53165478 53165563 -129249679 + Tigger7 DNA MER2_type 2402 2486 -1 354 214 57 156 chr6 53165841 53166033 -129249209 + L2 LINE L2 2296 2468 -846 1900 168 0 7 chr6 53166101 53166404 -129248838 - AluJb SINE Alu -11 301 1 1470 167 57 30 chr6 53166666 53166929 -129248313 + AluJo SINE Alu 19 288 -24 198 0 0 0 chr6 53167246 53167268 -129247974 + (T)n Simple_repeat Simple_repeat 1 22 0 288 0 0 0 chr6 53167337 53167369 -129247873 + (TG)n Simple_repeat Simple_repeat 2 33 0 266 274 49 39 chr6 53167503 53167605 -129247637 + L1ME LINE L1 374 476 -5920 1606 243 19 56 chr6 53167979 53168402 -129246840 + L1ME LINE L1 775 1171 -5238 1924 135 3 58 chr6 53168402 53168727 -129246515 + AluSx SINE Alu 1 307 -5 1606 243 19 56 chr6 53168727 53168896 -129246346 + L1ME LINE L1 1171 1345 -5064 810 186 0 0 chr6 53168899 53169023 -129246219 + FLAM_C SINE Alu 1 124 -19 292 245 14 65 chr6 53169027 53169166 -129246076 + L1ME LINE L1 1332 1463 -4943 * 2589 237 24 52 chr6 53169152 53169979 -129245263 + L1ME1 LINE L1 5339 6142 -24 841 150 0 0 chr6 53170134 53170267 -129244975 - FLAM_C SINE Alu 0 133 1 31 58 0 0 chr6 53171197 53171249 -129243993 + AT_rich Low_complexity Low_complexity 1 52 0 1966 164 0 3 chr6 53171454 53171766 -129243476 + AluSx SINE Alu 1 311 -1 736 240 54 5 chr6 53172671 53172892 -129242350 - MER106A DNA MER1_type -3 233 2 2376 103 0 0 chr6 53172899 53173211 -129242031 + AluSx SINE Alu 1 312 0 262 261 0 31 chr6 53173842 53173907 -129241335 + MIR3 SINE MIR 95 157 -51 2253 105 0 3 chr6 53173915 53174221 -129241021 - AluSx SINE Alu -7 305 1 2057 121 0 54 chr6 53174688 53175003 -129240239 - AluSg SINE Alu -12 298 1 2080 138 7 0 chr6 53175003 53175300 -129239942 - AluSx SINE Alu -12 300 2 429 246 54 15 chr6 53175496 53175626 -129239616 + LTR67 LTR ERVL 4 138 -419 864 206 42 39 chr6 53175641 53175951 -129239291 - MER69 DNA AcHobo 0 2526 2216 694 205 0 0 chr6 53175967 53176089 -129239153 - FLAM_C SINE Alu -19 124 3 8381 93 53 25 chr6 53176103 53177450 -129237792 - SVA Other Other 0 1386 1 416 203 62 0 chr6 53177470 53177598 -129237644 - MER69 DNA AcHobo -315 2211 2076 628 196 56 14 chr6 53177620 53177763 -129237479 - MER69 DNA AcHobo -1070 156 8 2483 112 28 8 chr6 53177764 53178121 -129237121 - THE1B LTR MaLR 0 364 1 796 291 42 42 chr6 53178138 53178543 -129236699 + LTR67 LTR ERVL 153 557 0 1657 184 3 7 chr6 53178873 53179166 -129236076 + AluJo SINE Alu 1 292 -20 319 332 88 55 chr6 53179207 53179658 -129235584 + L2 LINE L2 2573 3051 -221 221 320 137 27 chr6 53179899 53180118 -129235124 + MIR SINE MIR 20 262 0 487 314 204 12 chr6 53180119 53180536 -129234706 - L3 LINE CR1 -340 1237 741 1324 210 90 15 chr6 53181123 53181457 -129233785 + MLT1A1 LTR MaLR 5 363 -2 34 24 0 0 chr6 53181484 53181525 -129233717 + AT_rich Low_complexity Low_complexity 1 41 0 690 118 0 0 chr6 53181528 53181621 -129233621 - FLAM_C SINE Alu -21 122 30 381 298 94 40 chr6 53181642 53181949 -129233293 + L1MDa LINE L1 1784 2136 -4476 2311 91 3 0 chr6 53182196 53182481 -129232761 + AluSp SINE Alu 2 287 -26 2082 141 20 0 chr6 53182552 53182851 -129232391 + AluSx SINE Alu 1 305 -7 180 0 0 0 chr6 53182851 53182871 -129232371 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr6 53183016 53183037 -129232205 + AT_rich Low_complexity Low_complexity 1 21 0 231 317 0 0 chr6 53184001 53184061 -129231181 - MIR3 SINE MIR -8 200 141 2227 152 2 35 chr6 53184236 53184638 -129230604 + MLT1B LTR MaLR 1 389 -1 647 195 100 120 chr6 53184887 53185165 -129230077 + MER2 DNA MER2_type 1 272 -72 2294 125 0 0 chr6 53185165 53185478 -129229764 - AluSq SINE Alu 0 313 1 647 195 100 120 chr6 53185478 53185548 -129229694 + MER2 DNA MER2_type 272 342 -2 245 161 0 185 chr6 53186282 53186363 -129228879 + L2 LINE L2 3246 3311 -2 1998 155 0 3 chr6 53186873 53187170 -129228072 - AluJb SINE Alu -16 296 1 207 0 0 0 chr6 53187241 53187264 -129227978 + (T)n Simple_repeat Simple_repeat 1 23 0 2102 138 3 0 chr6 53187341 53187645 -129227597 - AluSx SINE Alu -7 305 1 920 165 0 47 chr6 53188253 53188423 -129226819 + AluJo SINE Alu 5 166 -146 244 253 44 22 chr6 53189221 53189312 -129225930 - MER5A DNA MER1_type 0 189 97 382 274 89 27 chr6 53189583 53189729 -129225513 + MIR SINE MIR 49 203 -59 862 160 0 0 chr6 53190346 53190477 -129224765 + FLAM_C SINE Alu 3 133 0 23 0 0 0 chr6 53190491 53190514 -129224728 + AT_rich Low_complexity Low_complexity 1 23 0 288 152 63 51 chr6 53190562 53190641 -129224601 + MER5A DNA MER1_type 27 106 -83 682 169 0 39 chr6 53190663 53190788 -129224454 + FLAM_C SINE Alu 1 121 -8 300 27 0 0 chr6 53190788 53190825 -129224417 + (TG)n Simple_repeat Simple_repeat 2 38 0 618 225 53 12 chr6 53192325 53192511 -129222731 - MIR SINE MIR -11 251 54 185 0 40 0 chr6 53193758 53193783 -129221459 + (TG)n Simple_repeat Simple_repeat 1 26 0 2196 96 3 3 chr6 53193908 53194228 -129221014 + AluSq SINE Alu 1 313 0 2381 86 0 13 chr6 53194682 53194986 -129220256 - AluY SINE Alu -11 300 1 200 233 0 0 chr6 53195624 53195667 -129219575 + T-rich Low_complexity Low_complexity 3 45 0 228 200 0 0 chr6 53195734 53195774 -129219468 + MLT1D LTR MaLR 250 289 -216 2189 115 0 29 chr6 53196021 53196334 -129218908 - AluSq SINE Alu -9 304 1 208 103 51 0 chr6 53196498 53196537 -129218705 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1787 193 10 0 chr6 53196900 53197205 -129218037 - AluJb SINE Alu -4 308 1 229 230 81 0 chr6 53197926 53198000 -129217242 + L1ME3A LINE L1 6086 6165 -5 806 279 86 65 chr6 53198206 53198561 -129216681 - LTR33A LTR ERVL 0 523 152 1574 203 115 38 chr6 53198561 53199030 -129216212 - MLT1D LTR MaLR 0 505 1 806 279 86 65 chr6 53199030 53199186 -129216056 - LTR33A LTR ERVL -371 152 1 309 270 131 36 chr6 53199199 53199539 -129215703 + L1ME LINE L1 5254 5635 -486 801 173 36 54 chr6 53199539 53199707 -129215535 - FRAM SINE Alu -1 165 1 210 231 0 19 chr6 53199784 53199836 -129215406 + CT-rich Low_complexity Low_complexity 1 51 0 512 317 80 5 chr6 53199893 53200117 -129215125 + MIR SINE MIR 22 262 0 2446 52 0 10 chr6 53200785 53201093 -129214149 + AluY SINE Alu 1 305 -6 15040 160 20 13 chr6 53201371 53203722 -129211520 + L1MA3 LINE L1 2816 5151 -1856 297 51 0 0 chr6 53203722 53203761 -129211481 + (CA)n Simple_repeat Simple_repeat 2 40 0 15040 160 20 13 chr6 53203761 53204641 -129210601 + L1MA3 LINE L1 5151 6024 -983 2373 101 0 0 chr6 53204641 53204939 -129210303 + AluSp SINE Alu 1 298 -15 15040 160 20 13 chr6 53204939 53205858 -129209384 + L1MA3 LINE L1 6024 7007 0 2393 98 0 0 chr6 53206430 53206726 -129208516 - AluSx SINE Alu -12 300 5 1749 137 0 65 chr6 53208588 53208894 -129206348 - AluJo SINE Alu -10 302 17 24 67 0 0 chr6 53209069 53209114 -129206128 + AT_rich Low_complexity Low_complexity 1 45 0 339 255 41 31 chr6 53209995 53210093 -129205149 - MIR SINE MIR -133 129 31 917 178 94 5 chr6 53213685 53213887 -129201355 + MIR SINE MIR 4 223 -39 204 67 0 0 chr6 53214551 53214581 -129200661 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2138 108 0 0 chr6 53214581 53214860 -129200382 - AluSx SINE Alu -33 279 1 33 25 0 0 chr6 53214961 53215001 -129200241 + AT_rich Low_complexity Low_complexity 1 40 0 1326 201 78 4 chr6 53215005 53215273 -129199969 - AluJo SINE Alu -24 288 1 2377 91 0 0 chr6 53215584 53215891 -129199351 - AluY SINE Alu -3 308 2 21 71 0 0 chr6 53215934 53215976 -129199266 + AT_rich Low_complexity Low_complexity 1 42 0 6078 135 81 16 chr6 53218077 53219233 -129196009 + Tigger3b DNA MER2_type 1 1231 0 2462 43 0 0 chr6 53220623 53220932 -129194310 + AluY SINE Alu 1 309 0 22 35 0 0 chr6 53221240 53221269 -129193973 + AT_rich Low_complexity Low_complexity 1 29 0 940 185 40 20 chr6 53221595 53221844 -129193398 - MER33 DNA MER1_type -31 293 40 1347 189 8 16 chr6 53221865 53222113 -129193129 + AluJo SINE Alu 47 292 -20 522 133 92 0 chr6 53222281 53222379 -129192863 + HY1 scRNA scRNA 1 107 -5 2430 64 10 26 chr6 53222379 53222690 -129192552 - AluSq SINE Alu -7 306 1 334 304 152 18 chr6 53222801 53223018 -129192224 - MIR SINE MIR -2 260 15 23 33 0 0 chr6 53223097 53223127 -129192115 + AT_rich Low_complexity Low_complexity 1 30 0 1629 187 3 35 chr6 53223182 53223498 -129191744 - AluJo SINE Alu -6 306 1 384 22 0 0 chr6 53224474 53224519 -129190723 + (TG)n Simple_repeat Simple_repeat 2 46 0 751 204 112 0 chr6 53225368 53225520 -129189722 - MLT1A1 LTR MaLR 0 365 197 1570 149 92 7 chr6 53225562 53225843 -129189399 - AluJo SINE Alu -7 305 1 3142 239 71 22 chr6 53225875 53228006 -129187236 - L1MCb LINE L1 -2806 3758 210 1141 241 86 47 chr6 53228006 53228090 -129187152 + MLT1C LTR MaLR 6 85 -382 1649 188 3 20 chr6 53228090 53228394 -129186848 + AluJb SINE Alu 1 299 -13 1141 241 86 47 chr6 53228394 53228752 -129186490 + MLT1C LTR MaLR 85 465 -2 513 243 55 44 chr6 53228752 53228986 -129186256 - L1MCa LINE L1 -5826 342 3 263 278 113 30 chr6 53229394 53229624 -129185618 - L1MCa LINE L1 -4741 1685 1437 361 287 64 59 chr6 53229826 53230028 -129185214 - HAL1 LINE L1 -6 2501 2299 240 221 12 23 chr6 53230196 53230282 -129184960 - HAL1b LINE L1 -518 830 746 624 136 41 23 chr6 53230405 53230625 -129184617 + CT-rich Low_complexity Low_complexity 1 224 0 1422 149 7 85 chr6 53230634 53230929 -129184313 - AluJb SINE Alu -38 274 3 295 292 221 0 chr6 53231077 53231231 -129184011 - HAL1 LINE L1 -590 1917 1730 515 292 185 24 chr6 53231281 53231859 -129183383 - HAL1 LINE L1 -731 1776 1106 261 225 125 0 chr6 53232077 53232157 -129183085 - L1MC4 LINE L1 -194 7848 7759 * 1907 236 81 18 chr6 53232151 53232511 -129182731 - L1MC4 LINE L1 -965 7077 6666 207 100 0 0 chr6 53232511 53232541 -129182701 + (TG)n Simple_repeat Simple_repeat 2 31 0 1907 236 81 18 chr6 53232541 53232748 -129182494 - L1MC4 LINE L1 -1376 6666 6474 238 225 14 99 chr6 53232867 53232938 -129182304 - HAL1 LINE L1 -1667 840 776 2050 83 53 0 chr6 53232949 53233240 -129182002 - AluSx SINE Alu 0 308 4 532 292 138 36 chr6 53233680 53233964 -129181278 - MLT1L LTR MaLR -2 613 359 2324 84 0 3 chr6 53233964 53234261 -129180981 - AluY SINE Alu -15 296 1 532 292 138 36 chr6 53234261 53234320 -129180922 - MLT1L LTR MaLR -256 359 307 840 129 0 23 chr6 53234320 53234452 -129180790 + FLAM_C SINE Alu 2 130 -3 532 292 138 36 chr6 53234452 53234498 -129180744 - MLT1L LTR MaLR -308 307 183 354 220 44 107 chr6 53234659 53234818 -129180424 - MLT1L LTR MaLR -461 154 6 1299 251 83 19 chr6 53235103 53235478 -129179764 - MLT1E LTR MaLR -7 586 188 982 181 170 47 chr6 53235514 53235708 -129179534 - AluJb SINE Alu -2 310 71 2215 107 0 0 chr6 53235708 53236006 -129179236 - AluSc SINE Alu -11 298 1 982 181 170 47 chr6 53236006 53236087 -129179155 - AluJb SINE Alu -241 71 1 768 187 0 0 chr6 53236089 53236212 -129179030 - MLT1E LTR MaLR -470 123 1 238 271 102 54 chr6 53236959 53237125 -129178117 - MIR SINE MIR -50 212 39 220 333 23 61 chr6 53237454 53237586 -129177656 + L2 LINE L2 3145 3271 -1 1049 155 0 6 chr6 53237647 53237821 -129177421 + MER2 DNA MER2_type 33 205 -140 13831 130 29 39 chr6 53237888 53238238 -129177004 - Tigger1 DNA MER2_type 0 2418 2066 6678 67 15 24 chr6 53238238 53239815 -129175427 - SVA Other Other -723 1386 57 551 14 28 0 chr6 53239815 53239886 -129175356 + (GGGAGA)n Simple_repeat Simple_repeat 1 73 0 13831 130 29 39 chr6 53239886 53240508 -129174734 - Tigger1 DNA MER2_type -351 2067 1440 1520 107 22 85 chr6 53240508 53240779 -129174463 - AluSg SINE Alu -56 254 1 13831 130 29 39 chr6 53240779 53241569 -129173673 - Tigger1 DNA MER2_type -978 1440 682 2269 101 3 0 chr6 53241569 53241866 -129173376 - AluSx SINE Alu -1 311 14 13831 130 29 39 chr6 53241866 53242542 -129172700 - Tigger1 DNA MER2_type -1736 682 1 313 283 67 83 chr6 53242706 53242826 -129172416 + MIR SINE MIR 26 143 -119 3911 212 83 48 chr6 53243176 53243827 -129171415 + L1MC3 LINE L1 6524 7151 -634 2532 71 0 7 chr6 53243827 53244135 -129171107 + AluSc SINE Alu 1 306 -3 3911 212 83 48 chr6 53244135 53244702 -129170540 + L1MC3 LINE L1 7151 7785 0 1339 102 0 110 chr6 53244864 53244914 -129170328 + AluY SINE Alu 84 138 -173 2402 49 10 0 chr6 53244914 53245202 -129170040 + AluY SINE Alu 1 291 -20 1339 102 0 110 chr6 53245202 53245396 -129169846 + AluY SINE Alu 138 301 -10 309 284 190 30 chr6 53246653 53246885 -129168357 - L1ME LINE L1 -352 5818 5550 229 250 71 24 chr6 53246936 53247020 -129168222 - L1M2 LINE L1 -844 5468 5381 2304 94 0 0 chr6 53247804 53248102 -129167140 + AluSx SINE Alu 1 298 -14 377 328 97 15 chr6 53249352 53249547 -129165695 - MLT1I LTR MaLR -198 211 1 2418 154 30 20 chr6 53249985 53250316 -129164926 + MSTB LTR MaLR 18 355 -71 1776 156 3 26 chr6 53250316 53250624 -129164618 - AluJb SINE Alu -11 301 1 2418 154 30 20 chr6 53250624 53250695 -129164547 + MSTB LTR MaLR 355 424 -2 308 231 60 75 chr6 53250804 53250938 -129164304 + MIR SINE MIR 82 213 -49 354 198 24 79 chr6 53250960 53251086 -129164156 - MER112 DNA MER1_type -55 205 87 1156 211 220 62 chr6 53251245 53251813 -129163429 - L1ME1 LINE L1 -7 6159 5502 434 269 45 60 chr6 53252041 53252242 -129163000 - L2 LINE L2 0 3313 3116 233 284 45 84 chr6 53252788 53252943 -129162299 - L2 LINE L2 -6 3307 3159 197 317 0 17 chr6 53253359 53253419 -129161823 - MIR SINE MIR -62 146 88 1953 211 62 127 chr6 53253458 53254183 -129161059 - L1MDa LINE L1 -5846 694 17 2296 89 0 0 chr6 53254304 53254596 -129160646 + AluSx SINE Alu 1 292 -20 2296 84 3 0 chr6 53254783 53255069 -129160173 + AluSp SINE Alu 16 302 -11 24 77 0 0 chr6 53255773 53255825 -129159417 + AT_rich Low_complexity Low_complexity 1 52 0 33 66 0 0 chr6 53255849 53255910 -129159332 + AT_rich Low_complexity Low_complexity 1 61 0 525 124 31 10 chr6 53256361 53256458 -129158784 + L1MA9 LINE L1 6184 6282 -30 234 286 0 16 chr6 53256466 53256529 -129158713 + MLT1I LTR MaLR 280 341 -68 23 54 0 0 chr6 53258088 53258125 -129157117 + AT_rich Low_complexity Low_complexity 1 37 0 1935 148 0 0 chr6 53261226 53261509 -129153733 - AluSx SINE Alu -29 283 1 263 253 182 10 chr6 53261618 53261717 -129153525 - L2 LINE L2 -9 3304 3189 450 233 22 15 chr6 53261844 53262022 -129153220 - L1ME1 LINE L1 -807 5339 5167 3241 155 52 5 chr6 53262271 53262845 -129152397 + MER6A DNA MER2_type 5 605 0 303 395 12 32 chr6 53262890 53263143 -129152099 + L2 LINE L2 2812 3059 -213 353 256 0 32 chr6 53263224 53263239 -129152003 - L1MA10 LINE L1 -1 6333 6319 965 236 136 35 chr6 53263239 53263645 -129151597 - L1ME1 LINE L1 -5 6161 5715 326 292 88 22 chr6 53263658 53263795 -129151447 + L2 LINE L2 3159 3304 -9 597 151 0 28 chr6 53264027 53264133 -129151109 + FLAM_C SINE Alu 26 128 -15 1054 194 93 8 chr6 53264216 53264463 -129150779 - MER119 DNA MER1_type 0 583 316 361 165 63 0 chr6 53264463 53264542 -129150700 - LTR61 LTR ERV1 0 595 512 700 67 67 0 chr6 53264653 53264757 -129150485 + LTR61 LTR ERV1 485 595 0 280 197 28 14 chr6 53264757 53264825 -129150417 - MER119 DNA MER1_type -264 319 251 2320 88 0 3 chr6 53264942 53265239 -129150003 + AluSx SINE Alu 1 296 -16 806 146 15 7 chr6 53265373 53265510 -129149732 + AluJb SINE Alu 161 298 -14 405 0 0 0 chr6 53265528 53265573 -129149669 + (CA)n Simple_repeat Simple_repeat 2 46 0 304 196 56 56 chr6 53265598 53265705 -129149537 - L1 LINE L1 -1157 4989 4883 354 255 125 54 chr6 53265728 53266081 -129149161 - L1 LINE L1 -1313 4833 4456 1254 205 81 22 chr6 53266123 53266445 -129148797 + MER58B DNA MER1_type 1 341 0 196 211 35 88 chr6 53267506 53267563 -129147679 - L2 LINE L2 -78 3235 3182 1699 112 62 0 chr6 53267576 53267818 -129147424 + AluSx SINE Alu 1 257 -55 1624 181 21 11 chr6 53267955 53268242 -129147000 - AluJb SINE Alu -16 296 7 881 93 78 0 chr6 53268288 53268417 -129146825 - MER85 DNA T2_type 0 139 1 22 0 0 0 chr6 53269491 53269513 -129145729 + AT_rich Low_complexity Low_complexity 1 22 0 459 240 98 22 chr6 53270605 53270788 -129144454 - L1MC4 LINE L1 -1 8041 7845 1398 130 174 12 chr6 53270948 53271201 -129144041 - AluSg SINE Alu -15 295 2 2166 121 0 13 chr6 53271380 53271695 -129143547 - AluSq SINE Alu 0 313 3 23 54 0 0 chr6 53271707 53271744 -129143498 + AT_rich Low_complexity Low_complexity 1 37 0 222 320 66 16 chr6 53272518 53272640 -129142602 - L2 LINE L2 -324 2989 2862 193 322 174 0 chr6 53272736 53272885 -129142357 + MIR SINE MIR 57 231 -31 1918 143 29 16 chr6 53273048 53273356 -129141886 + AluJb SINE Alu 1 312 0 2429 85 0 3 chr6 53274267 53274573 -129140669 - AluY SINE Alu -4 307 3 423 316 103 11 chr6 53274822 53274996 -129140246 - MIR3 SINE MIR -3 205 16 1241 203 106 47 chr6 53275550 53275890 -129139352 + MLT1A1 LTR MaLR 1 360 -5 2437 90 7 0 chr6 53276020 53276330 -129138912 + AluSx SINE Alu 1 312 0 1294 207 51 67 chr6 53276580 53276952 -129138290 - MLT1B LTR MaLR -6 384 19 484 248 9 0 chr6 53276961 53277066 -129138176 - MER5A DNA MER1_type -80 109 4 22 0 0 0 chr6 53278275 53278297 -129136945 + AT_rich Low_complexity Low_complexity 1 22 0 5419 144 48 18 chr6 53278302 53279707 -129135535 + L1PB1 LINE L1 10 2342 -4521 * 14049 187 24 18 chr6 53279706 53284344 -129130898 + L1PB1 LINE L1 2224 6867 0 26 0 0 0 chr6 53284346 53284372 -129130870 + AT_rich Low_complexity Low_complexity 1 26 0 405 308 32 0 chr6 53284591 53284747 -129130495 - MIR SINE MIR 0 262 102 1258 235 191 16 chr6 53284753 53285255 -129129987 - MLT1G LTR MaLR 0 590 23 3073 85 4 26 chr6 53285302 53285760 -129129482 - L1PB1 LINE L1 0 6151 5704 1857 140 0 67 chr6 53286489 53286817 -129128425 - AluSx SINE Alu -6 306 1 23 33 0 0 chr6 53286873 53286903 -129128339 + AT_rich Low_complexity Low_complexity 1 30 0 1373 147 182 0 chr6 53287104 53287362 -129127880 - AluJb SINE Alu -7 305 1 28 48 0 0 chr6 53287924 53287966 -129127276 + AT_rich Low_complexity Low_complexity 1 42 0 15227 90 4 2 chr6 53289213 53289599 -129125643 - L1PA7 LINE L1 0 6154 5770 1580 90 0 5 chr6 53289599 53289800 -129125442 - AluSp SINE Alu -113 200 1 15227 90 4 2 chr6 53289800 53292405 -129122837 - L1PA7 LINE L1 -384 5770 3221 1402 196 44 30 chr6 53292409 53292705 -129122537 - AluJo SINE Alu -12 300 1 21 0 0 0 chr6 53292735 53292756 -129122486 + AT_rich Low_complexity Low_complexity 1 21 0 222 296 197 40 chr6 53293013 53293165 -129122077 - MIR3 SINE MIR -3 205 30 2441 239 107 46 chr6 53293231 53294275 -129120967 - L1MC4 LINE L1 -2 8040 6933 639 251 101 10 chr6 53294285 53294484 -129120758 - L1ME1 LINE L1 -5 6161 5945 1017 256 132 14 chr6 53294499 53294855 -129120387 - L1MC4 LINE L1 -1097 6945 6548 1957 83 64 4 chr6 53294923 53295215 -129120027 - AluY SINE Alu 0 308 1 264 218 36 0 chr6 53296606 53296661 -129118581 - MLT1I LTR MaLR -232 177 121 1478 266 174 28 chr6 53298667 53299393 -129115849 + L2 LINE L2 2304 3134 -179 303 220 0 0 chr6 53299452 53299511 -129115731 - L1MC4 LINE L1 -1338 6704 6646 3215 92 9 18 chr6 53299654 53300112 -129115130 - L1PA8A LINE L1 -13 6118 5665 310 315 79 39 chr6 53300535 53300662 -129114580 - L2 LINE L2 0 3272 3141 274 311 121 18 chr6 53301061 53301334 -129113908 - L2 LINE L2 -630 2684 2384 551 260 144 74 chr6 53301445 53301611 -129113631 - L2 LINE L2 -957 2357 2204 2159 100 0 13 chr6 53301611 53301910 -129113332 + AluSg SINE Alu 1 295 -15 551 260 144 74 chr6 53301910 53302270 -129112972 - L2 LINE L2 -1110 2204 1794 411 298 286 0 chr6 53303817 53303995 -129111247 - MIR SINE MIR -32 230 2 446 308 105 69 chr6 53304403 53305069 -129110173 + L1MEc LINE L1 44 733 -5663 883 265 33 0 chr6 53305100 53305311 -129109931 - MER20 DNA MER1_type -1 218 1 240 278 96 9 chr6 53305447 53305562 -129109680 + L1ME2 LINE L1 6031 6155 -9 559 317 38 42 chr6 53305781 53306043 -129109199 + MIR SINE MIR 2 262 0 24 0 0 0 chr6 53306363 53306387 -129108855 + AT_rich Low_complexity Low_complexity 1 24 0 2446 68 0 3 chr6 53306636 53306932 -129108310 - AluY SINE Alu -8 303 9 53 17 0 0 chr6 53307705 53307765 -129107477 + AT_rich Low_complexity Low_complexity 1 60 0 313 266 43 21 chr6 53308412 53308506 -129106736 + L3 LINE CR1 1481 1576 -1 693 218 14 14 chr6 53309238 53309380 -129105862 - FRAM SINE Alu -24 152 11 333 256 64 48 chr6 53309862 53309987 -129105255 + L2 LINE L2 3187 3313 0 202 244 0 0 chr6 53310075 53310120 -129105122 + L2 LINE L2 3265 3309 -4 834 158 0 16 chr6 53310902 53311029 -129104213 - FLAM_C SINE Alu -18 125 1 24 32 0 0 chr6 53311069 53311100 -129104142 + AT_rich Low_complexity Low_complexity 1 31 0 307 250 78 17 chr6 53311107 53311223 -129104019 - L1MA9 LINE L1 -56 6256 6134 1514 178 0 45 chr6 53311371 53311663 -129103579 - AluJo SINE Alu -31 281 3 2197 107 0 10 chr6 53311809 53312108 -129103134 - AluSx SINE Alu -16 296 1 966 169 0 3 chr6 53312269 53312500 -129102742 + AluJb SINE Alu 1 296 -16 247 256 81 23 chr6 53314700 53314786 -129100456 + MER3 DNA MER1_type 13 103 -106 * 574 178 85 8 chr6 53314737 53314855 -129100387 - MER3 DNA MER1_type -5 204 78 194 314 246 17 chr6 53314927 53315045 -129100197 - MIR3 SINE MIR -54 154 10 2256 77 27 3 chr6 53315932 53316232 -129099010 - AluY SINE Alu -2 309 3 5247 189 51 10 chr6 53316244 53317632 -129097610 - L1MC1 LINE L1 0 6333 4897 22 70 0 0 chr6 53317819 53317862 -129097380 + AT_rich Low_complexity Low_complexity 1 43 0 620 235 69 65 chr6 53317886 53318163 -129097079 - Charlie7 DNA MER1_type -304 2308 2028 2342 62 0 33 chr6 53318163 53318467 -129096775 + AluY SINE Alu 1 294 -17 620 235 69 65 chr6 53318467 53318495 -129096747 - Charlie7 DNA MER1_type -584 2028 2002 2606 281 118 11 chr6 53318506 53319671 -129095571 + L1MEc LINE L1 45 1333 -5063 730 313 27 0 chr6 53319687 53319946 -129095296 + L1MEc LINE L1 1565 1830 -4566 22 35 0 0 chr6 53320213 53320242 -129095000 + AT_rich Low_complexity Low_complexity 1 29 0 183 256 0 0 chr6 53321101 53321144 -129094098 + L2 LINE L2 2194 2236 -1078 239 310 31 86 chr6 53321252 53321581 -129093661 + L2 LINE L2 2949 3312 -1 505 285 120 15 chr6 53321727 53321927 -129093315 - MLT1L LTR MaLR -25 590 370 294 206 0 0 chr6 53322531 53322599 -129092643 + (CA)n Simple_repeat Simple_repeat 2 69 0 253 229 96 0 chr6 53322599 53322682 -129092560 - L1MC4 LINE L1 -1337 6705 6615 230 185 37 0 chr6 53322683 53322737 -129092505 - L1MC4 LINE L1 -1339 6703 6648 314 359 24 12 chr6 53323226 53323396 -129091846 + L1M4 LINE L1 529 700 -5327 210 324 0 19 chr6 53323428 53323533 -129091709 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 317 280 17 58 chr6 53323540 53323620 -129091622 + L1M4 LINE L1 1043 1125 -4994 1059 241 13 8 chr6 53323620 53323856 -129091386 - MER8 DNA MER2_type -2 237 1 317 280 17 58 chr6 53323856 53324035 -129091207 + L1M4 LINE L1 1125 1211 -4908 * 834 120 0 14 chr6 53324029 53324171 -129091071 + L1 LINE L1 4465 4604 -1542 478 281 42 20 chr6 53324195 53324530 -129090712 + L1ME3A LINE L1 5729 6127 -43 1532 185 10 36 chr6 53324985 53325287 -129089955 - AluJo SINE Alu -18 294 1 698 199 84 6 chr6 53325435 53325601 -129089641 + L1MB5 LINE L1 4922 5100 -1046 459 168 0 109 chr6 53325601 53325702 -129089540 + MER21B LTR ERV1 1 90 -773 2165 208 69 16 chr6 53325834 53326324 -129088918 + MER21B LTR ERV1 294 809 -54 705 203 67 121 chr6 53326348 53326681 -129088561 + L1MB5 LINE L1 5089 5411 -777 3364 191 81 30 chr6 53326681 53327446 -129087796 + L1MB5 LINE L1 5371 6174 0 25 83 0 0 chr6 53328804 53328864 -129086378 + AT_rich Low_complexity Low_complexity 1 60 0 3854 154 41 22 chr6 53329293 53330093 -129085149 - L1MA8 LINE L1 -3 6288 5474 6121 85 3 6 chr6 53331190 53332062 -129083180 + L1PB1 LINE L1 5282 6150 -1 31 0 0 0 chr6 53332067 53332098 -129083144 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 53332170 53332203 -129083039 + AT_rich Low_complexity Low_complexity 1 33 0 1322 173 3 107 chr6 53335752 53336070 -129079172 + AluJo SINE Alu 17 301 -11 5163 109 46 16 chr6 53339829 53340699 -129074543 - L1MA3 LINE L1 -3 6302 5407 24 67 0 0 chr6 53341369 53341414 -129073828 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr6 53342226 53342265 -129072977 + AT_rich Low_complexity Low_complexity 1 39 0 1573 166 0 73 chr6 53342546 53342859 -129072383 + AluJb SINE Alu 1 290 -22 265 254 0 42 chr6 53343139 53343210 -129072032 + MIR3 SINE MIR 131 198 -10 203 290 14 43 chr6 53343321 53343390 -129071852 - MIR SINE MIR -184 78 12 186 43 0 0 chr6 53344101 53344124 -129071118 + (TA)n Simple_repeat Simple_repeat 1 23 0 356 230 102 27 chr6 53344251 53344438 -129070804 + L1ME3A LINE L1 5750 5950 -220 23 0 0 0 chr6 53344703 53344726 -129070516 + AT_rich Low_complexity Low_complexity 1 23 0 1411 89 49 18 chr6 53345796 53346020 -129069222 + L1MA3 LINE L1 5778 6008 -297 11097 139 53 10 chr6 53346044 53347932 -129067310 - Tigger1 DNA MER2_type -448 1970 1 2051 161 72 22 chr6 53348478 53348883 -129066359 - MSTB LTR MaLR -1 425 1 35 0 0 0 chr6 53348909 53348944 -129066298 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr6 53348944 53348983 -129066259 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1694 120 0 16 chr6 53348984 53349234 -129066008 - AluY SINE Alu -65 246 1 2114 145 0 6 chr6 53349234 53349545 -129065697 - AluSx SINE Alu -3 309 1 262 254 0 32 chr6 53349591 53349654 -129065588 + MIR SINE MIR 66 126 -82 1819 174 10 7 chr6 53350106 53350416 -129064826 - AluJo SINE Alu -1 311 1 183 290 77 77 chr6 53350494 53350677 -129064565 + L2 LINE L2 2205 2387 -927 2133 110 7 3 chr6 53351188 53351478 -129063764 + AluSx SINE Alu 1 291 -21 232 360 53 0 chr6 53351585 53351699 -129063543 + L2 LINE L2 3193 3312 -1 9311 177 16 3 chr6 53352232 53355019 -129060223 - L1PB1 LINE L1 -4 6863 4044 3120 236 76 12 chr6 53355036 53356011 -129059231 - L1PB1 LINE L1 -5821 1042 6 239 339 95 36 chr6 53356562 53356730 -129058512 + MIR SINE MIR 20 197 -65 23 33 0 0 chr6 53356896 53356926 -129058316 + AT_rich Low_complexity Low_complexity 1 30 0 387 0 0 0 chr6 53357831 53357874 -129057368 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 53357874 53357895 -129057347 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr6 53358691 53358727 -129056515 + AT_rich Low_complexity Low_complexity 1 36 0 344 283 124 14 chr6 53360417 53360562 -129054680 + MIR SINE MIR 77 237 -25 232 167 24 0 chr6 53361082 53361124 -129054118 + MLT1K LTR MaLR 544 586 -2 1449 185 0 39 chr6 53361828 53362136 -129053106 - AluJb SINE Alu -12 300 5 749 181 94 35 chr6 53363224 53363395 -129051847 - Charlie1a DNA MER1_type -1216 239 59 280 312 13 13 chr6 53363406 53363483 -129051759 + L2 LINE L2 3196 3272 0 558 303 55 43 chr6 53363739 53363993 -129051249 - MIR SINE MIR -4 258 2 1694 147 52 36 chr6 53364315 53364622 -129050620 + AluJo SINE Alu 1 312 0 291 298 81 8 chr6 53364806 53364930 -129050312 + MIR SINE MIR 20 152 -110 216 233 23 93 chr6 53364905 53364991 -129050251 - L3b LINE CR1 -208 1375 1296 * 1800 139 18 7 chr6 53366128 53366408 -129048834 - AluSx SINE Alu -29 283 1 1524 177 125 61 chr6 53366718 53367175 -129048067 - MLT1D LTR MaLR 0 505 20 852 194 23 11 chr6 53367735 53367910 -129047332 + MER110 LTR ERV1 1 177 -314 1930 172 75 34 chr6 53367928 53368369 -129046873 + LTR2B LTR ERV1 32 490 0 3072 74 7 0 chr6 53368369 53368787 -129046455 + Harlequin LTR ERV1 1 421 -6475 23732 58 5 1 chr6 53368799 53374318 -129040924 - L1PA5 LINE L1 -1 6153 623 759 74 0 0 chr6 53374316 53374411 -129040831 - L1PA5 LINE L1 -6048 98 4 * 49348 70 20 11 chr6 53374411 53380839 -129034403 + Harlequin LTR ERV1 413 6896 0 1970 182 77 34 chr6 53380855 53381295 -129033947 + LTR2B LTR ERV1 32 490 0 924 238 123 18 chr6 53381300 53381577 -129033665 + MER110 LTR ERV1 179 484 -7 2763 149 5 29 chr6 53382003 53382446 -129032796 + Tigger2a DNA MER2_type 3 434 0 349 247 43 0 chr6 53382610 53382703 -129032539 + MER96 DNA MER1_type? 1 97 -78 771 328 91 24 chr6 53382814 53383214 -129032028 - L2 LINE L2 -281 2991 2554 2371 140 15 0 chr6 53383214 53383556 -129031686 - MER7A DNA MER2_type -1 345 1 771 328 91 24 chr6 53383556 53383641 -129031601 - L2 LINE L2 -718 2554 2476 233 277 0 15 chr6 53383686 53383751 -129031491 + GA-rich Low_complexity Low_complexity 6 69 0 2125 160 90 5 chr6 53383849 53384250 -129030992 + L1MB2 LINE L1 5737 6171 0 995 327 115 32 chr6 53384250 53385005 -129030237 - L2 LINE L2 -1291 2023 1206 400 157 88 96 chr6 53385013 53385208 -129030034 + HsTC2 DNA Tc2 4 1898 0 193 264 149 25 chr6 53385219 53385340 -129029902 - L2 LINE L2 -2118 1196 1061 287 379 43 14 chr6 53385656 53385796 -129029446 - L2 LINE L2 -4 3268 3125 591 272 42 37 chr6 53385813 53386030 -129029212 - L2 LINE L2 -2 3311 3094 1328 140 176 4 chr6 53386074 53386324 -129028918 - AluSx SINE Alu -19 293 1 620 306 73 87 chr6 53386335 53386829 -129028413 - MLT1L LTR MaLR -17 598 112 310 310 0 0 chr6 53386865 53386936 -129028306 - L2 LINE L2 -259 3054 2984 204 305 37 0 chr6 53387569 53387651 -129027591 + MIR3 SINE MIR 114 198 -10 197 260 77 67 chr6 53387863 53387967 -129027275 + L2 LINE L2 3169 3273 -40 320 248 10 30 chr6 53387968 53387995 -129027247 + L1MCa LINE L1 1970 1996 -4430 936 207 11 0 chr6 53387995 53388169 -129027073 + L1MC1 LINE L1 6151 6326 -7 320 248 10 30 chr6 53388169 53388242 -129027000 + L1MCa LINE L1 1996 2068 -4358 * 343 256 47 0 chr6 53388209 53388295 -129026947 + L1MC4 LINE L1 6894 6983 -1339 207 0 0 0 chr6 53388295 53388318 -129026924 + (TA)n Simple_repeat Simple_repeat 1 23 0 1634 169 10 30 chr6 53388320 53388616 -129026626 - AluJo SINE Alu -22 290 1 499 260 85 6 chr6 53389052 53389229 -129026013 - MLT1I LTR MaLR -13 396 206 536 217 13 96 chr6 53391104 53391261 -129023981 + MER97a DNA MER1_type? 23 166 -728 242 198 83 42 chr6 53391887 53391983 -129023259 + L1MC4 LINE L1 7943 8042 0 546 294 0 16 chr6 53391996 53392122 -129023120 - MER5B DNA MER1_type -54 124 1 432 0 0 0 chr6 53393412 53393460 -129021782 + (CA)n Simple_repeat Simple_repeat 2 49 0 189 132 0 0 chr6 53394110 53394148 -129021094 + (A)n Simple_repeat Simple_repeat 1 38 0 220 441 37 0 chr6 53395784 53395945 -129019297 + L2 LINE L2 2560 2726 -588 2508 67 0 19 chr6 53396354 53396668 -129018574 - AluY SINE Alu -3 308 1 244 13 0 203 chr6 53396932 53397011 -129018231 + (T)n Simple_repeat Simple_repeat 1 63 0 742 295 120 22 chr6 53397014 53397373 -129017869 - LTR33 LTR ERVL -92 429 36 219 157 0 0 chr6 53397995 53398046 -129017196 + (TATAA)n Simple_repeat Simple_repeat 2 52 0 340 275 31 42 chr6 53398080 53398273 -129016969 - L1ME LINE L1 -298 5823 5633 1576 169 3 77 chr6 53398633 53398970 -129016272 - AluJb SINE Alu 0 312 1 629 119 16 16 chr6 53399201 53399327 -129015915 + CT-rich Low_complexity Low_complexity 2 127 0 204 167 62 0 chr6 53399331 53399379 -129015863 + L3b LINE CR1 1276 1326 -257 343 300 35 39 chr6 53399403 53399558 -129015684 + MIR SINE MIR 21 180 -62 13513 107 28 126 chr6 53399577 53401409 -129013833 + Tigger1 DNA MER2_type 1 2011 -407 252 0 0 0 chr6 53401409 53401437 -129013805 + (TATTG)n Simple_repeat Simple_repeat 2 29 0 1773 117 75 0 chr6 53401437 53401702 -129013540 - AluSq SINE Alu -27 286 2 13513 107 28 126 chr6 53401702 53402546 -129012696 + Tigger1 DNA MER2_type 2009 2416 -2 372 130 0 0 chr6 53402601 53402687 -129012555 + AluS SINE Alu 228 313 0 21 0 0 0 chr6 53403869 53403890 -129011352 + AT_rich Low_complexity Low_complexity 1 21 0 228 309 0 0 chr6 53405874 53405929 -129009313 - L2 LINE L2 -19 3253 3199 370 250 224 0 chr6 53406940 53407096 -129008146 + MER20B DNA MER1_type 1 191 -592 409 327 6 42 chr6 53407401 53407569 -129007673 - MIR3 SINE MIR -27 181 20 571 250 51 45 chr6 53408467 53408643 -129006599 + MIR3 SINE MIR 11 187 -21 256 311 0 0 chr6 53409092 53409166 -129006076 + (CATA)n Simple_repeat Simple_repeat 1 74 0 278 338 35 49 chr6 53409166 53409308 -129005934 - L2 LINE L2 -36 3236 3097 524 271 63 81 chr6 53409523 53409744 -129005498 - MIR SINE MIR -43 219 3 1865 197 129 6 chr6 53409841 53410353 -129004889 - MER69 DNA AcHobo -42 2484 1910 867 256 34 25 chr6 53410353 53410591 -129004651 - MER69 DNA AcHobo -892 334 95 414 271 10 0 chr6 53410633 53410729 -129004513 - MER69 DNA AcHobo -1129 97 1 667 216 48 18 chr6 53411188 53411355 -129003887 - L1PA15 LINE L1 0 6165 5994 2283 99 3 3 chr6 53411584 53411888 -129003354 - AluSg SINE Alu -6 304 1 248 219 47 0 chr6 53412496 53412560 -129002682 - MER115 DNA AcHobo -575 118 52 1155 168 82 5 chr6 53412560 53412768 -129002474 - MER58A DNA MER1_type 0 224 1 21 0 0 0 chr6 53413180 53413201 -129002041 + AT_rich Low_complexity Low_complexity 1 21 0 252 274 196 39 chr6 53413525 53413627 -129001615 + L2 LINE L2 3155 3272 0 193 271 85 0 chr6 53413647 53413706 -129001536 - L2 LINE L2 -3 3310 3247 556 260 158 0 chr6 53414197 53414343 -129000899 - MER5A DNA MER1_type -9 180 12 420 277 25 74 chr6 53415887 53416089 -128999153 + MIR SINE MIR 6 197 -65 240 274 132 25 chr6 53416343 53416547 -128998695 - L1ME4a LINE L1 -102 6019 5794 1741 215 48 3 chr6 53417323 53417700 -128997542 - MER63 DNA MER1_type 0 1060 667 220 231 19 0 chr6 53418694 53418746 -128996496 - MER5B DNA MER1_type -41 137 85 305 230 126 11 chr6 53419906 53419993 -128995249 + L2 LINE L2 3213 3309 -4 395 257 142 0 chr6 53420367 53420480 -128994762 - MIR SINE MIR -49 213 85 612 276 157 51 chr6 53420481 53420913 -128994329 - LTR67 LTR ERVL -30 527 50 324 67 50 0 chr6 53421233 53421293 -128993949 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1963 158 0 3 chr6 53421355 53421652 -128993590 - AluJb SINE Alu -16 296 1 1453 112 0 10 chr6 53421698 53421904 -128993338 + AluSc SINE Alu 66 269 -40 2095 116 0 14 chr6 53422711 53423005 -128992237 - AluSx SINE Alu -20 292 3 2171 112 0 7 chr6 53423105 53423400 -128991842 + AluSg SINE Alu 1 293 -17 218 245 31 41 chr6 53424591 53424689 -128990553 + CT-rich Low_complexity Low_complexity 4 100 0 993 210 6 0 chr6 53424822 53424998 -128990244 - MER5B DNA MER1_type 0 178 2 554 209 59 107 chr6 53425320 53425381 -128989861 + MER5B DNA MER1_type 1 63 -115 2177 101 0 11 chr6 53425381 53425668 -128989574 + AluSx SINE Alu 5 288 -24 554 209 59 107 chr6 53425668 53425793 -128989449 + MER5B DNA MER1_type 63 178 0 1149 110 0 3 chr6 53426449 53426676 -128988566 + AluSg SINE Alu 1 296 -16 181 93 0 47 chr6 53427712 53427755 -128987487 + (CAGAGA)n Simple_repeat Simple_repeat 6 46 0 215 303 165 18 chr6 53428717 53428826 -128986416 - MIR SINE MIR -65 143 19 836 167 12 0 chr6 53429220 53429382 -128985860 + CT-rich Low_complexity Low_complexity 3 166 0 191 375 9 18 chr6 53429710 53429822 -128985420 - MIR3 SINE MIR -5 203 93 186 268 71 0 chr6 53430256 53430312 -128984930 + MIR SINE MIR 184 243 -19 246 303 0 26 chr6 53430847 53430923 -128984319 + L2 LINE L2 3185 3258 -14 204 40 0 0 chr6 53432519 53432544 -128982698 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 206 130 0 130 chr6 53432648 53432702 -128982540 + L3 LINE CR1 1528 1574 -3 302 44 0 22 chr6 53433041 53433086 -128982156 + (CA)n Simple_repeat Simple_repeat 2 45 0 251 315 0 0 chr6 53433719 53433792 -128981450 - MER117 DNA MER1_type -20 177 105 305 301 0 0 chr6 53433999 53434072 -128981170 - L2 LINE L2 0 3272 3200 2042 142 0 16 chr6 53434980 53435290 -128979952 - AluSq SINE Alu -8 305 1 270 203 174 0 chr6 53435305 53435374 -128979868 + MER103 DNA DNA 11 91 -75 234 103 51 0 chr6 53435431 53435470 -128979772 - MER103 DNA DNA -124 42 2 1969 115 68 0 chr6 53437202 53437481 -128977761 - AluSq SINE Alu -14 299 2 463 202 6 121 chr6 53437772 53437945 -128977297 - MER112 DNA MER1_type -9 251 99 286 185 0 120 chr6 53438011 53438080 -128977162 - MER112 DNA MER1_type -176 84 27 2106 124 3 0 chr6 53438080 53438378 -128976864 - AluY SINE Alu -12 299 1 286 185 0 120 chr6 53438378 53438400 -128976842 - MER112 DNA MER1_type -233 27 4 257 338 0 0 chr6 53439085 53439165 -128976077 + L2 LINE L2 3193 3272 0 599 280 72 32 chr6 53439633 53439644 -128975598 + MIR SINE MIR 1 10 -252 1048 166 126 25 chr6 53439644 53439843 -128975399 + MER20 DNA MER1_type 1 219 0 599 280 72 32 chr6 53439843 53440081 -128975161 + MIR SINE MIR 10 260 -2 281 316 102 56 chr6 53440732 53440928 -128974314 + MIR3 SINE MIR 3 207 -1 1097 180 0 6 chr6 53442443 53442626 -128972616 + MER58A DNA MER1_type 14 195 -29 661 151 135 113 chr6 53442628 53442756 -128972486 + MER53 DNA DNA 1 136 -53 3516 201 22 11 chr6 53442756 53443402 -128971840 - MER82 DNA MER2_type 0 653 1 661 151 135 113 chr6 53443402 53443458 -128971784 + MER53 DNA DNA 136 189 0 323 295 170 29 chr6 53443582 53443823 -128971419 + L2 LINE L2 2804 3078 -194 2357 89 0 0 chr6 53444420 53444712 -128970530 - AluSc SINE Alu -17 292 1 2276 151 0 23 chr6 53446056 53446401 -128968841 + MER1B DNA MER1_type 1 337 0 537 209 0 74 chr6 53446468 53446631 -128968611 + MER103 DNA DNA 15 165 -1 306 306 0 48 chr6 53448441 53448565 -128966677 + 7SK RNA RNA 7 124 -69 420 263 0 66 chr6 53450769 53450921 -128964321 - MIR3 SINE MIR 0 208 67 672 188 62 51 chr6 53451224 53451400 -128963842 + MER104 DNA MER2_type 2 179 -1 562 203 24 0 chr6 53454181 53454304 -128960938 + MIR SINE MIR 81 206 -56 186 143 0 0 chr6 53454805 53454840 -128960402 + (TGGGGG)n Simple_repeat Simple_repeat 3 37 0 199 318 15 15 chr6 53454961 53455027 -128960215 + MIR SINE MIR 87 141 -67 271 326 54 0 chr6 53455262 53455354 -128959888 - MLT1I LTR MaLR -306 103 7 201 39 0 0 chr6 53456349 53456375 -128958867 + (TC)n Simple_repeat Simple_repeat 2 27 0 341 272 0 43 chr6 53456840 53456932 -128958310 - MER5A DNA MER1_type -22 167 80 2299 187 49 5 chr6 53457761 53458168 -128957074 - MSTB LTR MaLR -1 425 1 405 324 47 55 chr6 53458793 53459049 -128956193 + MIR SINE MIR 2 255 -7 2256 184 0 32 chr6 53459611 53459945 -128955297 + MLT1B LTR MaLR 1 321 -69 2276 110 13 0 chr6 53459945 53460246 -128954996 - AluSq SINE Alu -8 305 1 2256 184 0 32 chr6 53460246 53460314 -128954928 + MLT1B LTR MaLR 321 390 0 286 252 29 29 chr6 53460688 53460791 -128954451 + LTR16A1 LTR ERVL 4 106 -351 * 2296 89 92 0 chr6 53460783 53461108 -128954134 - THE1B LTR MaLR -9 355 1 764 302 131 0 chr6 53461133 53461408 -128953834 + LTR16A LTR ERVL 126 436 -14 268 297 54 0 chr6 53463752 53463826 -128951416 - L2 LINE L2 -59 3213 3136 403 248 48 33 chr6 53463866 53464022 -128951220 - MIR SINE MIR -62 146 40 584 227 136 47 chr6 53464095 53464500 -128950742 - L1M4 LINE L1 -1508 4638 4198 414 0 0 0 chr6 53464890 53464936 -128950306 + (GA)n Simple_repeat Simple_repeat 1 46 0 219 69 0 0 chr6 53466790 53466819 -128948423 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 2038 191 88 31 chr6 53466924 53467401 -128947841 + MLT1D LTR MaLR 2 505 0 1639 197 53 92 chr6 53468007 53468709 -128946533 + MER4A LTR ERV1 1 456 -9 2674 195 93 20 chr6 53468722 53469378 -128945864 + L1MB2 LINE L1 5468 6171 0 193 250 0 0 chr6 53469939 53469983 -128945259 + MIR SINE MIR 51 94 -168 277 363 0 11 chr6 53469987 53470078 -128945164 + L2 LINE L2 2606 2695 -619 325 234 54 71 chr6 53470314 53470498 -128944744 + L1MC4a LINE L1 5866 6046 -1762 2036 165 39 90 chr6 53470530 53470876 -128944366 - MLT1D LTR MaLR -2 503 190 2228 121 0 0 chr6 53470876 53471174 -128944068 - AluSg SINE Alu -7 303 6 2036 165 39 90 chr6 53471174 53471337 -128943905 - MLT1D LTR MaLR -315 190 20 2294 77 22 29 chr6 53471473 53471786 -128943456 + AluY SINE Alu 1 311 0 255 272 185 31 chr6 53471786 53471942 -128943300 - MIR SINE MIR -52 210 30 2003 260 114 89 chr6 53472202 53473730 -128941512 - L2 LINE L2 -1748 1566 1 232 276 0 92 chr6 53474096 53474183 -128941059 - L2 LINE L2 -1 3312 3234 216 163 0 0 chr6 53475542 53475585 -128939657 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 2302 91 3 3 chr6 53476063 53476372 -128938870 + AluSx SINE Alu 1 309 -3 225 164 146 55 chr6 53476699 53476809 -128938433 - L1ME4a LINE L1 -23 6098 5979 541 249 119 5 chr6 53476908 53477101 -128938141 - L1ME4a LINE L1 -341 5780 5566 2409 182 47 41 chr6 53477179 53477668 -128937574 - MLT1D LTR MaLR -13 492 1 286 227 196 21 chr6 53477794 53477891 -128937351 - MIR SINE MIR -76 132 19 3971 63 0 0 chr6 53478276 53478784 -128936458 - L1PA5 LINE L1 -1 6153 5646 22 0 0 0 chr6 53479337 53479359 -128935883 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 53479549 53479570 -128935672 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 53480240 53480263 -128934979 + AT_rich Low_complexity Low_complexity 1 23 0 2196 91 7 3 chr6 53480681 53480979 -128934263 - AluSp SINE Alu -14 299 1 23 0 0 0 chr6 53480979 53481002 -128934240 + AT_rich Low_complexity Low_complexity 1 23 0 663 236 16 11 chr6 53481172 53481354 -128933888 - L1MEc LINE L1 -3362 2718 2536 1618 162 49 125 chr6 53481357 53481895 -128933347 - Charlie5 DNA MER1_type -1 2623 2130 2205 108 0 0 chr6 53481895 53482190 -128933052 + AluY SINE Alu 1 295 -16 1618 162 49 125 chr6 53482190 53482226 -128933016 - Charlie5 DNA MER1_type -494 2130 2093 6092 200 36 24 chr6 53482454 53483928 -128931314 - Charlie5 DNA MER1_type -548 2076 582 1740 132 0 0 chr6 53483928 53484186 -128931056 + AluSg1 SINE Alu 37 294 -15 6092 200 36 24 chr6 53484186 53484238 -128931004 - Charlie5 DNA MER1_type -2042 582 532 1056 86 6 61 chr6 53484243 53484406 -128930836 - MER4E LTR ERV1 -625 154 1 776 188 0 61 chr6 53484406 53484617 -128930625 - Charlie5 DNA MER1_type -2414 198 1 650 120 0 0 chr6 53484797 53484918 -128930324 - AluSx SINE Alu 0 314 194 1031 133 0 0 chr6 53484918 53485061 -128930181 - AluSx SINE Alu -170 143 1 553 208 100 85 chr6 53485070 53485188 -128930054 - L1MEc LINE L1 -3731 2386 2271 480 323 35 10 chr6 53485188 53485389 -128929853 + MER63A DNA MER1_type 5 210 0 553 208 100 85 chr6 53485389 53485597 -128929645 - L1MEc LINE L1 -3846 2271 2054 26 50 0 0 chr6 53485600 53485640 -128929602 + AT_rich Low_complexity Low_complexity 1 40 0 656 333 73 14 chr6 53486457 53487021 -128928221 - L1MEc LINE L1 -4563 1698 1102 304 291 126 50 chr6 53487060 53487424 -128927818 - L1MEc LINE L1 -5118 952 561 1137 192 58 31 chr6 53488224 53488515 -128926727 + MLT1A2 LTR MaLR 1 299 -75 245 234 35 21 chr6 53488555 53488700 -128926542 + (TTATA)n Simple_repeat Simple_repeat 5 151 0 * 343 231 52 12 chr6 53488607 53488780 -128926462 + (TA)n Simple_repeat Simple_repeat 1 180 0 2220 113 73 14 chr6 53489173 53489517 -128925725 + THE1B LTR MaLR 1 364 0 269 236 11 11 chr6 53489606 53489695 -128925547 - L1MC5 LINE L1 -36 7925 7837 739 167 0 8 chr6 53489703 53489823 -128925419 - FLAM_A SINE Alu -14 119 1 216 184 0 0 chr6 53491044 53491093 -128924149 + (TG)n Simple_repeat Simple_repeat 2 50 0 26 0 0 0 chr6 53491576 53491602 -128923640 + AT_rich Low_complexity Low_complexity 1 26 0 338 290 36 14 chr6 53491775 53491913 -128923329 - L1ME4a LINE L1 -249 5872 5732 203 294 107 80 chr6 53491919 53492025 -128923217 + L3 LINE CR1 712 814 -763 2829 13 0 0 chr6 53492025 53492336 -128922906 - AluYa5 SINE Alu 0 311 1 203 294 107 80 chr6 53492336 53492556 -128922686 + L3 LINE CR1 814 1047 -530 27 29 0 0 chr6 53493038 53493072 -128922170 + AT_rich Low_complexity Low_complexity 1 34 0 353 261 152 18 chr6 53493544 53493709 -128921533 - MIR SINE MIR -34 228 42 486 276 0 5 chr6 53493939 53494089 -128921153 - MIR SINE MIR -36 226 3 33 73 0 0 chr6 53494500 53494568 -128920674 + AT_rich Low_complexity Low_complexity 1 68 0 2053 108 40 3 chr6 53494572 53494868 -128920374 - AluY SINE Alu -4 307 1 4524 139 37 7 chr6 53494868 53495268 -128919974 - L1MC1 LINE L1 -9 6324 5889 292 58 19 39 chr6 53495268 53495320 -128919922 + (TATAA)n Simple_repeat Simple_repeat 1 51 0 4524 139 37 7 chr6 53495320 53495662 -128919580 - L1MC1 LINE L1 -444 5889 5559 1357 148 43 8 chr6 53495720 53495977 -128919265 - L1MB1 LINE L1 -3 6165 5900 1456 171 4 15 chr6 53495981 53496250 -128918992 + L1MB1 LINE L1 5609 5874 -294 227 318 100 27 chr6 53496316 53496426 -128918816 + MIR SINE MIR 18 135 -73 4378 63 26 0 chr6 53496493 53497076 -128918166 - L1PA7 LINE L1 -1 6153 5556 211 168 53 0 chr6 53498334 53498429 -128916813 + (TA)n Simple_repeat Simple_repeat 1 100 0 268 172 117 68 chr6 53499168 53499331 -128915911 - L1MEc LINE L1 -2962 3253 3083 * 834 214 18 7 chr6 53499328 53499577 -128915665 - L1MEc LINE L1 -3709 2523 2260 1002 48 0 0 chr6 53499636 53499761 -128915481 - L1PA5 LINE L1 0 6154 6030 584 189 0 0 chr6 53499761 53499888 -128915354 - L1MEc LINE L1 -4080 2316 2190 1229 213 45 135 chr6 53499890 53500290 -128914952 + MLT2B1 LTR ERVL 3 366 -48 39 0 0 0 chr6 53500327 53500366 -128914876 + AT_rich Low_complexity Low_complexity 1 39 0 985 205 123 47 chr6 53500425 53500806 -128914436 - L1MEc LINE L1 -4260 2136 1727 21 0 0 0 chr6 53500812 53500833 -128914409 + AT_rich Low_complexity Low_complexity 1 21 0 2756 153 30 6 chr6 53500834 53501358 -128913884 - L1MA8 LINE L1 -4 6287 5751 352 348 14 35 chr6 53501428 53501569 -128913673 + L2 LINE L2 3134 3271 -1 447 275 28 64 chr6 53502351 53502602 -128912640 + L2 LINE L2 2943 3184 -129 1465 198 69 57 chr6 53502626 53503015 -128912227 + MSTD LTR MaLR 1 394 -2 248 290 16 0 chr6 53503642 53503704 -128911538 + L2 LINE L2 3223 3285 -28 1883 163 6 28 chr6 53503710 53504029 -128911213 - AluJb SINE Alu 0 312 1 2186 116 140 8 chr6 53504527 53504905 -128910337 + MSTA LTR MaLR 1 428 0 335 285 89 25 chr6 53505106 53505264 -128909978 - L2 LINE L2 -2422 892 725 190 173 13 26 chr6 53505986 53506032 -128909210 + MIR SINE MIR 74 121 -87 893 113 7 0 chr6 53506102 53506244 -128908998 + L1MA5A LINE L1 6151 6293 -4 322 223 0 64 chr6 53506245 53506339 -128908903 + MIR SINE MIR 141 228 -34 22 0 0 0 chr6 53506608 53506630 -128908612 + AT_rich Low_complexity Low_complexity 1 22 0 1591 170 3 40 chr6 53512809 53513109 -128902133 + AluJo SINE Alu 1 289 -23 323 327 48 0 chr6 53513512 53513616 -128901626 - MIR SINE MIR -63 145 37 224 118 59 0 chr6 53514747 53514815 -128900427 + (TA)n Simple_repeat Simple_repeat 1 72 0 205 297 31 16 chr6 53515700 53515764 -128899478 - L3 LINE CR1 0 1577 1513 888 146 9 158 chr6 53516005 53516321 -128898921 + MER33 DNA MER1_type 55 323 -1 239 250 12 0 chr6 53516490 53516574 -128898668 + CT-rich Low_complexity Low_complexity 1 85 0 375 209 44 33 chr6 53516795 53516886 -128898356 - L2 LINE L2 -9 3304 3213 2131 126 0 3 chr6 53517455 53517749 -128897493 - AluSx SINE Alu -19 293 1 233 270 111 0 chr6 53519967 53520030 -128895212 - L2 LINE L2 -2 3311 3242 414 235 10 39 chr6 53520367 53520469 -128894773 - MER5B DNA MER1_type -79 99 1 891 251 64 46 chr6 53520773 53521056 -128894186 + AluJo SINE Alu 3 290 -12 746 275 92 69 chr6 53522249 53522685 -128892557 + L2 LINE L2 2863 3308 -5 246 81 0 0 chr6 53523544 53523581 -128891661 + (TC)n Simple_repeat Simple_repeat 1 37 0 214 316 0 0 chr6 53524206 53524263 -128890979 + CT-rich Low_complexity Low_complexity 3 59 0 467 220 71 37 chr6 53524303 53524509 -128890733 + L1 LINE L1 3797 4002 -2144 1211 243 6 46 chr6 53526582 53526911 -128888331 - L3 LINE CR1 -1 1576 1261 198 291 73 0 chr6 53528260 53528315 -128886927 + MER5B DNA MER1_type 61 119 -59 182 105 53 18 chr6 53528873 53528930 -128886312 + CT-rich Low_complexity Low_complexity 2 60 0 306 0 0 0 chr6 53528930 53528964 -128886278 + (CA)n Simple_repeat Simple_repeat 1 34 0 379 370 45 0 chr6 53529298 53529452 -128885790 + MIR SINE MIR 36 196 -66 326 198 0 130 chr6 53529646 53529823 -128885419 - Charlie7 DNA MER1_type -2457 155 2 2630 121 0 0 chr6 53529963 53530327 -128884915 - THE1B LTR MaLR 0 364 1 211 296 0 42 chr6 53530648 53530719 -128884523 - L2 LINE L2 -17 3296 3229 261 221 39 16 chr6 53531657 53531784 -128883458 + (TA)n Simple_repeat Simple_repeat 2 131 0 276 160 0 40 chr6 53532345 53532420 -128882822 + (TA)n Simple_repeat Simple_repeat 2 73 0 3350 176 45 14 chr6 53533283 53533987 -128881255 - LTR8A LTR ERV1 -1 726 1 181 393 128 0 chr6 53534292 53534409 -128880833 + L2 LINE L2 3141 3272 0 483 260 72 91 chr6 53534731 53535050 -128880192 + L2 LINE L2 3000 3312 -1 314 291 37 32 chr6 53535402 53535591 -128879651 + LTR67 LTR ERVL 360 549 -8 395 270 9 27 chr6 53535598 53535709 -128879533 + MIR3 SINE MIR 89 197 -11 198 0 0 0 chr6 53538576 53538598 -128876644 + (TG)n Simple_repeat Simple_repeat 1 22 0 250 321 0 0 chr6 53539130 53539211 -128876031 - MLT1K LTR MaLR -357 231 151 303 280 131 0 chr6 53539586 53539693 -128875549 + L2 LINE L2 3193 3313 0 2366 86 3 0 chr6 53540027 53540319 -128874923 + AluSq SINE Alu 1 293 -20 190 215 31 62 chr6 53540444 53540509 -128874733 + L2 LINE L2 3202 3264 -8 357 284 21 78 chr6 53542048 53542189 -128873053 - MIR SINE MIR -110 152 20 449 240 45 67 chr6 53543994 53544173 -128871069 - MER5B DNA MER1_type 0 178 4 203 136 45 0 chr6 53544746 53544790 -128870452 + (TATG)n Simple_repeat Simple_repeat 3 48 0 23 0 0 0 chr6 53544977 53545000 -128870242 + AT_rich Low_complexity Low_complexity 1 23 0 446 0 0 18 chr6 53546220 53546275 -128868967 + (CAA)n Simple_repeat Simple_repeat 2 55 0 282 279 70 23 chr6 53546451 53546580 -128868662 + MIR SINE MIR 108 242 -20 490 261 121 29 chr6 53549776 53549983 -128865259 + MIR SINE MIR 6 231 -31 322 269 29 29 chr6 53550673 53550777 -128864465 + MER5A DNA MER1_type 9 112 -77 219 125 31 16 chr6 53552488 53552552 -128862690 + (TA)n Simple_repeat Simple_repeat 2 66 0 207 0 0 0 chr6 53552650 53552673 -128862569 + (TTTAA)n Simple_repeat Simple_repeat 5 27 0 550 189 176 0 chr6 53553200 53553285 -128861957 + MER58A DNA MER1_type 45 114 -2306 297 0 0 0 chr6 53553285 53553318 -128861924 + (GA)n Simple_repeat Simple_repeat 2 34 0 550 189 176 0 chr6 53553318 53553380 -128861862 + MER58A DNA MER1_type 114 218 -6 523 279 89 11 chr6 53553390 53553569 -128861673 - MIR SINE MIR -69 193 1 2659 120 35 2 chr6 53553925 53554350 -128860892 - Tigger2 DNA MER2_type 0 2718 2280 349 161 0 32 chr6 53554359 53554421 -128860821 + MER8 DNA MER2_type 180 239 0 275 315 10 123 chr6 53554839 53554984 -128860258 + MER5A DNA MER1_type 10 127 -62 2098 128 10 0 chr6 53554984 53555280 -128859962 + AluSg SINE Alu 1 299 -11 275 315 10 123 chr6 53555280 53555337 -128859905 + MER5A DNA MER1_type 127 189 0 796 219 6 0 chr6 53556541 53556705 -128858537 + U1 snRNA snRNA 1 165 0 201 323 20 10 chr6 53556733 53556832 -128858410 - L2 LINE L2 -452 2862 2763 195 246 373 0 chr6 53557081 53557199 -128858043 + MIR SINE MIR 70 231 -31 218 176 20 0 chr6 53559157 53559208 -128856034 + (TA)n Simple_repeat Simple_repeat 2 53 0 369 236 14 74 chr6 53559258 53559406 -128855836 - L1MC5 LINE L1 -60 7901 7763 681 267 64 48 chr6 53559721 53559972 -128855270 - MIR SINE MIR -7 255 1 308 348 63 21 chr6 53561579 53561765 -128853477 + MIR SINE MIR 5 201 -7 1099 102 11 6 chr6 53564187 53564265 -128850977 + (TTTC)n Simple_repeat Simple_repeat 1 256 0 1099 102 11 6 chr6 53564265 53564442 -128850800 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 226 265 0 15 chr6 53564571 53564639 -128850603 + (TA)n Simple_repeat Simple_repeat 1 67 0 671 130 0 28 chr6 53566739 53566847 -128848395 + FLAM_C SINE Alu 29 133 -10 456 289 140 22 chr6 53566847 53567169 -128848073 - MLT1J2 LTR MaLR -71 379 20 439 259 172 43 chr6 53567284 53567516 -128847726 - MIR SINE MIR 0 262 1 201 304 14 0 chr6 53567582 53567651 -128847591 + MIR SINE MIR 96 165 -97 344 218 40 75 chr6 53567953 53568079 -128847163 - L1MC4a LINE L1 -1921 5887 5767 2008 138 5 68 chr6 53568079 53568479 -128846763 - THE1C LTR MaLR 0 375 1 344 218 40 75 chr6 53568479 53568526 -128846716 - L1MC4a LINE L1 -2041 5767 5720 2374 25 43 0 chr6 53568694 53568975 -128846267 - AluY SINE Alu -18 293 1 1072 269 81 42 chr6 53569348 53569795 -128845447 - MLT1J LTR MaLR -45 466 3 280 246 105 53 chr6 53570519 53570633 -128844609 + MIR3 SINE MIR 70 189 -19 224 30 30 0 chr6 53571152 53571185 -128844057 + (CA)n Simple_repeat Simple_repeat 2 35 0 1738 201 57 41 chr6 53571279 53571325 -128843917 - MLT1D LTR MaLR 0 505 461 2132 132 39 76 chr6 53571325 53571462 -128843780 - MER65A LTR ERV1 0 445 304 1861 164 0 4 chr6 53571462 53571797 -128843445 - AluSx SINE Alu 0 337 4 2132 132 39 76 chr6 53571797 53572064 -128843178 - MER65A LTR ERV1 -141 304 55 1666 202 0 29 chr6 53572064 53572371 -128842871 - AluSx SINE Alu -14 298 1 2132 132 39 76 chr6 53572371 53572425 -128842817 - MER65A LTR ERV1 -390 55 1 1738 201 57 41 chr6 53572425 53572870 -128842372 - MLT1D LTR MaLR -44 461 6 266 278 90 23 chr6 53572950 53573083 -128842159 - L2 LINE L2 0 3313 3172 218 333 45 15 chr6 53573304 53573436 -128841806 - L2 LINE L2 -438 2876 2741 1309 180 41 103 chr6 53573531 53573920 -128841322 + MLT1A1 LTR MaLR 1 365 0 718 282 18 26 chr6 53575233 53575460 -128839782 + MIR SINE MIR 38 262 0 1842 171 55 6 chr6 53576391 53576737 -128838505 - MLT1A1 LTR MaLR 0 365 3 840 333 109 66 chr6 53576748 53578556 -128836686 + L2 LINE L2 224 2109 -1205 25 51 0 0 chr6 53578558 53578597 -128836645 + AT_rich Low_complexity Low_complexity 1 39 0 939 292 168 14 chr6 53578666 53579101 -128836141 + L2 LINE L2 2812 3313 0 1538 137 4 0 chr6 53579480 53579713 -128835529 - MER46A DNA MER2_type 0 236 3 480 284 8 64 chr6 53580093 53580357 -128834885 - HAL1 LINE L1 -2169 338 90 216 392 20 14 chr6 53581635 53581783 -128833459 + MIR3 SINE MIR 59 207 -1 628 248 38 6 chr6 53581804 53581961 -128833281 - MLT1G1 LTR MaLR 0 595 434 245 0 89 0 chr6 53582021 53582066 -128833176 + A-rich Low_complexity Low_complexity 3 51 0 220 268 56 113 chr6 53582625 53582707 -128832535 - MIR SINE MIR -76 186 114 1975 128 27 7 chr6 53582707 53583003 -128832239 + AluSg SINE Alu 1 302 -8 220 268 56 113 chr6 53583003 53583062 -128832180 - MIR SINE MIR -148 114 53 914 112 0 0 chr6 53583520 53583654 -128831588 + L1PB1 LINE L1 6016 6149 -2 251 305 24 12 chr6 53585218 53585300 -128829942 - MIR SINE MIR -122 140 58 986 307 126 41 chr6 53586016 53586508 -128828734 + L3 LINE CR1 940 1473 -104 188 316 18 0 chr6 53586665 53586722 -128828520 - MIR3 SINE MIR -22 186 129 599 316 6 72 chr6 53588085 53588417 -128826825 - L3 LINE CR1 -235 1342 1033 186 43 0 0 chr6 53588857 53588880 -128826362 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 820 281 168 32 chr6 53592703 53593109 -128822133 - L2 LINE L2 -1 3312 2852 23 0 0 0 chr6 53594457 53594480 -128820762 + AT_rich Low_complexity Low_complexity 1 23 0 249 268 0 61 chr6 53594953 53595035 -128820207 + L2 LINE L2 3237 3313 0 429 195 0 0 chr6 53596317 53596394 -128818848 - MER69 DNA AcHobo 0 2526 2450 * 558 254 29 0 chr6 53596391 53596529 -128818713 - MER69 DNA AcHobo -2379 147 6 788 141 39 6 chr6 53596642 53596798 -128818444 + MER53 DNA DNA 1 161 -28 1083 193 0 6 chr6 53597247 53597428 -128817814 + MER5A DNA MER1_type 10 189 0 189 171 0 0 chr6 53597457 53597492 -128817750 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 207 217 43 0 chr6 53597577 53597623 -128817619 + L2 LINE L2 3223 3270 -2 287 305 43 50 chr6 53598787 53598928 -128816314 + L2 LINE L2 2565 2704 -610 21 0 0 0 chr6 53598937 53598958 -128816284 + AT_rich Low_complexity Low_complexity 1 21 0 591 301 6 0 chr6 53599410 53599586 -128815656 - MER5B DNA MER1_type 0 178 2 23 33 0 0 chr6 53601998 53602028 -128813214 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr6 53603223 53603252 -128811990 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 53605849 53605879 -128809363 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr6 53613094 53613128 -128802114 + AT_rich Low_complexity Low_complexity 1 34 0 184 310 35 0 chr6 53613898 53613956 -128801286 - L2 LINE L2 -6 3307 3248 283 211 14 14 chr6 53614505 53614576 -128800666 + MLT1J LTR MaLR 109 179 -332 211 296 51 51 chr6 53616263 53616361 -128798881 - L2 LINE L2 -1 3271 3174 1071 187 48 0 chr6 53616807 53617016 -128798226 - MER20 DNA MER1_type 0 219 1 267 247 110 27 chr6 53617077 53617223 -128798019 - L1ME4a LINE L1 -5 6116 5959 280 183 17 0 chr6 53617226 53617286 -128797956 + MER4-int LTR ERV1 1105 1165 -5433 24 0 0 0 chr6 53618674 53618698 -128796544 + AT_rich Low_complexity Low_complexity 1 24 0 2007 139 3 0 chr6 53618967 53619262 -128795980 - AluSx SINE Alu -9 303 8 64 75 0 0 chr6 53620349 53620483 -128794759 + AT_rich Low_complexity Low_complexity 1 134 0 2299 77 0 0 chr6 53621230 53621517 -128793725 + AluY SINE Alu 4 290 -21 7819 14 5 0 chr6 53621808 53622705 -128792537 - L1PA3 LINE L1 0 6155 5255 3593 32 0 0 chr6 53622703 53623135 -128792107 + L1PA3 LINE L1 4839 5270 -876 * 252 284 0 26 chr6 53623175 53623330 -128791912 + (TATATG)n Simple_repeat Simple_repeat 2 152 0 26 0 0 0 chr6 53623357 53623383 -128791859 + AT_rich Low_complexity Low_complexity 1 26 0 590 319 86 9 chr6 53623502 53623734 -128791508 + MIR SINE MIR 1 250 -12 2009 135 0 44 chr6 53624077 53624395 -128790847 + AluSx SINE Alu 1 304 -8 1925 251 61 34 chr6 53624398 53624987 -128790255 + MER90 LTR ERV1 1 605 -9 2319 93 0 0 chr6 53626167 53626458 -128788784 - AluSc SINE Alu -16 293 3 504 302 93 33 chr6 53626674 53626889 -128788353 + MIR SINE MIR 35 262 0 454 356 96 4 chr6 53627522 53627761 -128787481 + MIR SINE MIR 2 262 0 2170 121 0 10 chr6 53628001 53628306 -128786936 + AluSx SINE Alu 1 302 -10 180 292 0 21 chr6 53628713 53628761 -128786481 - L2 LINE L2 -10 3303 3257 341 325 138 0 chr6 53628852 53629040 -128786202 - L3 LINE CR1 -191 1386 1173 248 283 121 0 chr6 53629076 53629175 -128786067 + L2 LINE L2 3195 3305 -8 246 213 188 25 chr6 53630092 53630172 -128785070 + L2 LINE L2 3168 3260 -12 2369 88 7 0 chr6 53631088 53631395 -128783847 - AluY SINE Alu -2 309 1 187 160 60 0 chr6 53631958 53632008 -128783234 + GA-rich Low_complexity Low_complexity 4 56 0 4170 169 41 18 chr6 53632765 53633751 -128781491 - L1MB8 LINE L1 -1 6177 5171 1473 225 19 50 chr6 53633764 53634024 -128781218 - L1MB8 LINE L1 -2091 4055 3814 2792 31 0 0 chr6 53634024 53634342 -128780900 + AluYb8 SINE Alu 1 318 0 1473 225 19 50 chr6 53634342 53634543 -128780699 - L1MB8 LINE L1 -2332 3814 3608 276 130 0 0 chr6 53634898 53634944 -128780298 + (ATG)n Simple_repeat Simple_repeat 2 47 0 211 240 0 40 chr6 53634993 53635043 -128780199 + polypyrimidine Low_complexity Low_complexity 1 48 0 208 146 21 0 chr6 53636432 53636467 -128778775 + (TTCA)n Simple_repeat Simple_repeat 3 41 -10 1860 174 7 0 chr6 53636467 53636766 -128778476 - AluJb SINE Alu -11 301 1 208 146 21 0 chr6 53636766 53636778 -128778464 + (TTCA)n Simple_repeat Simple_repeat 41 51 0 1678 254 50 34 chr6 53636780 53637435 -128777807 - L2 LINE L2 -5 3308 2597 1250 185 9 0 chr6 53637469 53637691 -128777551 + MER58A DNA MER1_type 1 224 0 378 0 0 0 chr6 53638195 53638237 -128777005 + (CA)n Simple_repeat Simple_repeat 1 42 0 478 262 80 53 chr6 53638320 53638545 -128776697 - L2 LINE L2 -509 2805 2575 1511 266 37 59 chr6 53640486 53641027 -128774215 + L1MDa LINE L1 5 533 -6007 529 222 74 37 chr6 53641234 53641423 -128773819 + L1MDa LINE L1 883 1078 -5465 34 24 0 0 chr6 53642616 53642657 -128772585 + AT_rich Low_complexity Low_complexity 1 41 0 1142 176 59 31 chr6 53642669 53642891 -128772351 - AluJb SINE Alu -82 230 3 247 250 0 0 chr6 53642938 53642990 -128772252 + CT-rich Low_complexity Low_complexity 4 55 0 390 314 16 8 chr6 53644023 53644144 -128771098 - L2 LINE L2 -13 3300 3179 530 300 131 33 chr6 53644227 53644587 -128770655 + LTR33A LTR ERVL 1 395 -128 1632 277 30 37 chr6 53644695 53645261 -128769981 - L2 LINE L2 -835 2479 1918 712 192 14 20 chr6 53646252 53646398 -128768844 + MIR SINE MIR 47 191 -71 284 325 61 18 chr6 53646946 53647060 -128768182 - MER5A DNA MER1_type -36 153 35 1220 222 251 26 chr6 53647383 53647762 -128767480 + MLT2B1 LTR ERVL 1 464 -56 46 19 0 0 chr6 53647772 53647825 -128767417 + AT_rich Low_complexity Low_complexity 1 53 0 787 61 18 0 chr6 53647829 53647943 -128767299 + (TCTA)n Simple_repeat Simple_repeat 4 119 0 260 161 3 0 chr6 53647944 53647996 -128767246 + MLT2C2 LTR ERVL 345 464 0 282 95 0 0 chr6 53649792 53649834 -128765408 + (CA)n Simple_repeat Simple_repeat 2 43 0 32 26 0 0 chr6 53650310 53650349 -128764893 + AT_rich Low_complexity Low_complexity 1 39 0 193 156 0 0 chr6 53650436 53650468 -128764774 - MIR SINE MIR -145 117 86 1003 252 95 72 chr6 53651847 53652308 -128762934 + MLT1J LTR MaLR 1 472 -39 690 310 71 41 chr6 53652354 53652916 -128762326 - L2 LINE L2 0 3313 2687 694 263 125 2 chr6 53652952 53653295 -128761947 + MLT1J2 LTR MaLR 16 450 0 549 298 56 81 chr6 53653299 53653729 -128761513 - L2 LINE L2 -690 2624 2206 209 33 33 0 chr6 53654194 53654224 -128761018 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1098 287 79 57 chr6 53654553 53654990 -128760252 + MLT1J LTR MaLR 7 458 -53 1686 141 63 4 chr6 53654990 53655098 -128760144 + AluJo SINE Alu 11 111 -201 345 47 0 0 chr6 53655098 53655141 -128760101 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 1686 141 63 4 chr6 53655141 53655301 -128759941 + AluJo SINE Alu 111 295 -17 1098 287 79 57 chr6 53655301 53655354 -128759888 + MLT1J LTR MaLR 458 508 -3 228 347 82 0 chr6 53655584 53655682 -128759560 - MER91A DNA MER1_type 0 196 91 574 311 19 6 chr6 53655687 53655848 -128759394 - MER91A DNA MER1_type -29 167 5 514 280 84 0 chr6 53657585 53657799 -128757443 + MIR SINE MIR 16 247 -15 344 252 109 34 chr6 53657954 53658101 -128757141 + L2 LINE L2 2999 3156 -157 261 179 36 0 chr6 53658111 53658195 -128757047 + (TA)n Simple_repeat Simple_repeat 2 88 0 333 186 35 26 chr6 53658252 53658365 -128756877 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 526 256 33 0 chr6 53658385 53658506 -128756736 + L2 LINE L2 3179 3303 -10 633 164 18 0 chr6 53659595 53659705 -128755537 + MER5A DNA MER1_type 1 112 -77 318 244 194 56 chr6 53659861 53660021 -128755221 + MIR SINE MIR 48 229 -33 180 77 0 0 chr6 53660910 53660936 -128754306 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 897 138 0 0 chr6 53660947 53661070 -128754172 - FLAM_C SINE Alu -16 127 5 250 296 167 53 chr6 53661872 53662004 -128753238 + L2 LINE L2 3126 3272 0 2205 86 32 0 chr6 53663957 53664236 -128751006 - AluSx SINE Alu -24 288 1 215 230 92 41 chr6 53664993 53665091 -128750151 - MIR SINE MIR -64 144 89 260 217 0 17 chr6 53665455 53665515 -128749727 - MER31B LTR ERV1 -407 59 1 714 282 66 5 chr6 53665879 53666092 -128749150 + MIR SINE MIR 4 229 -33 1691 124 98 9 chr6 53667249 53667564 -128747678 + MER61A LTR ERV1 1 343 0 547 294 61 54 chr6 53668827 53669123 -128746119 - L2 LINE L2 0 3313 3016 * 746 285 65 29 chr6 53669096 53669447 -128745795 - L2 LINE L2 -459 2855 2492 355 253 11 21 chr6 53669454 53669549 -128745693 - MER94 DNA DNA -34 100 7 351 284 110 9 chr6 53669637 53669746 -128745496 - MIR SINE MIR -73 135 16 4630 267 193 17 chr6 53669813 53671022 -128744220 - L2 LINE L2 -19 3294 2299 2196 118 0 0 chr6 53671022 53671326 -128743916 + AluSx SINE Alu 1 304 -8 4630 267 193 17 chr6 53671326 53672307 -128742935 - L2 LINE L2 -1014 2299 707 553 269 150 0 chr6 53672353 53672513 -128742729 - MER5A DNA MER1_type 0 189 6 397 305 0 58 chr6 53672504 53672694 -128742548 - L2 LINE L2 -2599 715 537 * 442 282 113 5 chr6 53672736 53672931 -128742311 + MIR SINE MIR 32 247 -15 21 0 0 0 chr6 53673560 53673581 -128741661 + AT_rich Low_complexity Low_complexity 1 21 0 283 308 19 19 chr6 53674281 53674388 -128740854 + MLT2E LTR ERVL 36 142 -486 639 268 74 11 chr6 53674763 53674953 -128740289 + MIR SINE MIR 30 231 -31 22 0 0 0 chr6 53674980 53675002 -128740240 + AT_rich Low_complexity Low_complexity 1 22 0 684 327 11 15 chr6 53675225 53675485 -128739757 + MARNA DNA Mariner 261 519 -67 237 250 73 0 chr6 53676522 53676590 -128738652 - L2 LINE L2 0 3272 3200 725 237 59 0 chr6 53676754 53676940 -128738302 + MER58A DNA MER1_type 28 224 0 217 231 0 103 chr6 53677212 53677290 -128737952 + MIR3 SINE MIR 137 206 -2 522 348 13 0 chr6 53677890 53678045 -128737197 - L2 LINE L2 0 3272 3116 201 191 85 0 chr6 53678111 53678158 -128737084 + L3 LINE CR1 812 862 -715 257 268 13 38 chr6 53678670 53678827 -128736415 - L1ME3A LINE L1 -208 5962 5810 26 0 0 0 chr6 53678902 53678928 -128736314 + AT_rich Low_complexity Low_complexity 1 26 0 1045 279 69 22 chr6 53679096 53679688 -128735554 - L1MEd LINE L1 -3316 2813 2194 1510 215 30 0 chr6 53679905 53680203 -128735039 - AluJo SINE Alu -5 307 1 565 309 53 20 chr6 53680486 53681085 -128734157 - L1MEd LINE L1 -4641 1669 1007 1614 234 127 24 chr6 53681103 53681569 -128733673 - MLT1E LTR MaLR -77 516 3 255 377 80 10 chr6 53681688 53681977 -128733265 + L2 LINE L2 2593 2901 -413 * 304 292 140 93 chr6 53681975 53682447 -128732795 - L2 LINE L2 -2 3311 2818 467 327 153 31 chr6 53682497 53682922 -128732320 + LTR33 LTR ERVL 45 521 0 2701 46 0 0 chr6 53682951 53683279 -128731963 - L1PA4 LINE L1 -3 6152 5825 1409 295 202 18 chr6 53683293 53684208 -128731034 - L2 LINE L2 -557 2757 1674 221 310 155 28 chr6 53685402 53685544 -128729698 + L2 LINE L2 3108 3267 -5 205 193 11 57 chr6 53685584 53685594 -128729648 + (CATATA)n Simple_repeat Simple_repeat 1 10 -74 1838 210 3 3 chr6 53685594 53685941 -128729301 + MER7A DNA MER2_type 1 345 -1 205 193 11 57 chr6 53685941 53686018 -128729224 + (CATATA)n Simple_repeat Simple_repeat 10 84 0 192 152 0 0 chr6 53686024 53686057 -128729185 + (CATA)n Simple_repeat Simple_repeat 2 34 0 180 77 0 0 chr6 53686140 53686166 -128729076 + (ATG)n Simple_repeat Simple_repeat 3 28 0 2110 137 0 0 chr6 53687149 53687449 -128727793 + AluSx SINE Alu 7 306 -6 319 372 78 0 chr6 53687493 53687622 -128727620 - L2 LINE L2 -1 3271 3133 869 270 105 4 chr6 53687759 53688092 -128727150 + MLT1G3 LTR MaLR 1 294 -236 806 270 22 0 chr6 53688093 53688271 -128726971 + MLT1G3 LTR MaLR 414 595 0 418 332 60 8 chr6 53688641 53688876 -128726366 - MER112 DNA MER1_type -13 247 1 23 68 0 0 chr6 53688998 53689042 -128726200 + AT_rich Low_complexity Low_complexity 1 44 0 643 273 132 0 chr6 53689297 53689494 -128725748 - MIR SINE MIR 0 262 30 2423 85 0 0 chr6 53689494 53689801 -128725441 - AluY SINE Alu -4 307 1 643 273 132 0 chr6 53689801 53689830 -128725412 - MIR SINE MIR -232 30 6 2200 108 0 3 chr6 53689954 53690250 -128724992 + AluSx SINE Alu 5 299 -13 25 0 0 0 chr6 53690257 53690282 -128724960 + AT_rich Low_complexity Low_complexity 1 25 0 208 0 62 0 chr6 53690318 53690350 -128724892 + (TA)n Simple_repeat Simple_repeat 1 34 0 2292 98 0 13 chr6 53690657 53690972 -128724270 - AluY SINE Alu 0 311 1 362 174 0 81 chr6 53691314 53691400 -128723842 + L1MEc LINE L1 36 114 -6282 5842 255 94 20 chr6 53691431 53693645 -128721597 + L1MEc LINE L1 87 2463 -3933 678 274 41 0 chr6 53693832 53694051 -128721191 + L1MEc LINE L1 2492 2719 -3496 25 0 0 0 chr6 53694051 53694076 -128721166 + AT_rich Low_complexity Low_complexity 1 25 0 261 83 0 0 chr6 53694076 53694112 -128721130 - Alu SINE Alu -20 282 247 503 251 152 9 chr6 53694119 53694330 -128720912 + L1MEc LINE L1 2714 2954 -3261 2112 129 3 7 chr6 53694378 53694688 -128720554 - AluSx SINE Alu -3 309 1 1113 257 49 16 chr6 53694801 53695295 -128719947 + L1MEc LINE L1 2989 3498 -2717 3152 151 29 44 chr6 53695405 53695484 -128719758 + L1MB1 LINE L1 5160 5239 -929 2110 115 29 50 chr6 53695484 53695867 -128719375 + THE1C LTR MaLR 1 375 0 3152 151 29 44 chr6 53695867 53695973 -128719269 + L1MB1 LINE L1 5239 5345 -823 1653 123 116 8 chr6 53695973 53696271 -128718971 + AluSg SINE Alu 2 310 0 3152 151 29 44 chr6 53696271 53696823 -128718419 + L1MB1 LINE L1 5345 5888 -280 1078 206 46 144 chr6 53697029 53697819 -128717423 - L1ME LINE L1 -461 5701 4987 360 188 69 59 chr6 53698920 53699021 -128716221 + MIR SINE MIR 52 153 -55 1439 148 4 22 chr6 53699359 53699629 -128715613 + L1MB1 LINE L1 5897 6161 -7 338 279 31 81 chr6 53699682 53699843 -128715399 - MLT1I LTR MaLR -199 210 58 2031 79 46 4 chr6 53700952 53701268 -128713974 + AluY SINE Alu 1 311 0 14056 137 28 18 chr6 53701476 53703871 -128711371 - Tigger1 DNA MER2_type 0 2418 1 21 0 0 0 chr6 53703983 53704004 -128711238 + AT_rich Low_complexity Low_complexity 1 21 0 1073 289 161 40 chr6 53705495 53706074 -128709168 + HAL1 LINE L1 19 527 -1980 647 193 51 96 chr6 53706074 53706271 -128708971 + MER5A DNA MER1_type 2 189 0 1073 289 161 40 chr6 53706271 53706668 -128708574 + HAL1 LINE L1 527 1113 -1394 1589 269 171 17 chr6 53706682 53707544 -128707698 + HAL1 LINE L1 1329 2322 -185 773 253 137 51 chr6 53707574 53708178 -128707064 + HAL1b LINE L1 689 1344 -4 1145 164 43 19 chr6 53709770 53709978 -128705264 - MER20 DNA MER1_type 0 219 7 220 321 60 12 chr6 53710228 53710302 -128704940 - L2 LINE L2 0 3272 3192 207 0 0 0 chr6 53710302 53710325 -128704917 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 325 375 143 5 chr6 53710339 53710555 -128704687 + L2 LINE L2 3027 3272 0 639 74 32 32 chr6 53710717 53710812 -128704430 - L1PA8 LINE L1 -12 6160 6066 232 357 61 10 chr6 53711014 53711112 -128704130 - L2 LINE L2 -16 3256 3154 1969 120 0 7 chr6 53711679 53712005 -128703237 + AluSg SINE Alu 1 324 0 499 305 91 29 chr6 53712047 53712388 -128702854 + L1ME2 LINE L1 5318 5679 -442 216 261 0 0 chr6 53712416 53712462 -128702780 - MIR SINE MIR -117 145 100 1629 252 127 21 chr6 53712481 53713009 -128702233 + MLT1E LTR MaLR 10 593 0 23 0 0 0 chr6 53713009 53713032 -128702210 + AT_rich Low_complexity Low_complexity 1 23 0 345 288 10 35 chr6 53713385 53713499 -128701743 + CT-rich Low_complexity Low_complexity 3 193 0 539 246 115 15 chr6 53713660 53713850 -128701392 + MIR SINE MIR 19 219 -43 524 309 55 10 chr6 53713885 53714086 -128701156 - MIR SINE MIR 0 262 53 242 254 119 0 chr6 53714100 53714159 -128701083 - MER113 DNA MER1_type? -3 518 453 948 226 26 52 chr6 53714342 53714648 -128700594 + L1ME2 LINE L1 5858 6155 -9 732 236 159 35 chr6 53716016 53716418 -128698824 - HAL1b LINE L1 -382 966 515 351 288 141 24 chr6 53716425 53716595 -128698647 - HAL1b LINE L1 -1143 205 16 2532 43 3 0 chr6 53717788 53718093 -128697149 - AluY SINE Alu -5 306 1 336 215 76 0 chr6 53718093 53718172 -128697070 + L2 LINE L2 3224 3308 -5 1982 152 24 21 chr6 53719495 53719869 -128695373 - THE1C LTR MaLR 0 375 1 31 58 0 0 chr6 53720026 53720078 -128695164 + AT_rich Low_complexity Low_complexity 1 52 0 21 57 0 0 chr6 53721274 53721309 -128693933 + AT_rich Low_complexity Low_complexity 1 35 0 469 323 128 4 chr6 53721454 53721680 -128693562 + MIR SINE MIR 9 262 0 1279 65 5 33 chr6 53722538 53722722 -128692520 + L1PA4 LINE L1 5973 6151 -4 1993 138 3 3 chr6 53723086 53723383 -128691859 - AluSx SINE Alu -15 297 1 2124 123 20 8 chr6 53723797 53724148 -128691094 + THE1A LTR MaLR 1 355 0 10688 107 28 0 chr6 53724148 53725685 -128689557 + THE1A-int LTR MaLR 1 1580 0 2363 117 8 3 chr6 53725685 53726037 -128689205 + THE1A LTR MaLR 1 354 -1 21 0 0 0 chr6 53726048 53726069 -128689173 + AT_rich Low_complexity Low_complexity 1 21 0 464 263 82 79 chr6 53726228 53726608 -128688634 + L1MEc LINE L1 1093 1473 -4923 446 289 101 55 chr6 53726656 53727610 -128687632 + L1MEc LINE L1 1597 2553 -3662 237 316 13 0 chr6 53727728 53727804 -128687438 + L1ME3A LINE L1 5988 6064 -106 263 321 28 0 chr6 53728251 53728357 -128686885 + L3 LINE CR1 885 993 -584 865 297 95 52 chr6 53729120 53729581 -128685661 - LTR33 LTR ERVL -38 483 3 252 264 88 74 chr6 53729652 53729800 -128685442 - L2 LINE L2 0 3313 3164 24 32 0 0 chr6 53730402 53730433 -128684809 + AT_rich Low_complexity Low_complexity 1 31 0 528 82 82 0 chr6 53731293 53731378 -128683864 - L1PA13 LINE L1 -7 6156 6065 1846 118 0 38 chr6 53731492 53731780 -128683462 + AluSx SINE Alu 1 277 -35 213 179 0 89 chr6 53732252 53732308 -128682934 - L2 LINE L2 -2 3311 3261 182 311 126 15 chr6 53734451 53734586 -128680656 - MIR3 SINE MIR -28 180 31 501 176 117 1 chr6 53734939 53735056 -128680186 + MLT1G LTR MaLR 412 588 -2 364 284 75 92 chr6 53735299 53735591 -128679651 + MLT1I LTR MaLR 116 402 -7 3365 314 142 23 chr6 53735591 53736210 -128679032 + L2 LINE L2 1009 1553 -1760 8755 45 2 1 chr6 53736210 53738087 -128677155 + L1PA4 LINE L1 4286 6163 0 3365 314 142 23 chr6 53738087 53739506 -128675736 + L2 LINE L2 1553 3312 -1 2311 98 3 0 chr6 53739942 53740238 -128675004 + AluSx SINE Alu 1 297 -15 346 324 9 0 chr6 53741135 53741240 -128674002 - MIR3 SINE MIR -54 154 49 220 350 109 7 chr6 53742124 53742261 -128672981 - MIR SINE MIR -8 254 104 2077 136 0 13 chr6 53742263 53742572 -128672670 + AluSx SINE Alu 1 305 -7 258 32 0 0 chr6 53743243 53743274 -128671968 + (CA)n Simple_repeat Simple_repeat 1 31 0 13501 89 6 4 chr6 53745902 53748564 -128666678 - L1PA7 LINE L1 0 6154 3473 21 0 0 0 chr6 53749386 53749407 -128665835 + AT_rich Low_complexity Low_complexity 1 21 0 282 343 137 20 chr6 53750043 53750189 -128665053 - MIR3 SINE MIR -25 183 21 731 328 87 30 chr6 53750537 53751185 -128664057 + L2 LINE L2 2626 3313 0 484 298 82 39 chr6 53751507 53751786 -128663456 - L2 LINE L2 -418 2896 2606 243 328 35 47 chr6 53752924 53753095 -128662147 - MIR SINE MIR -65 197 29 21 57 0 0 chr6 53753110 53753145 -128662097 + AT_rich Low_complexity Low_complexity 1 35 0 446 288 152 11 chr6 53753154 53753345 -128661897 + MIR SINE MIR 5 222 -40 336 408 5 5 chr6 53753467 53753651 -128661591 + MIR3 SINE MIR 17 200 -8 310 253 143 0 chr6 53754542 53754633 -128660609 - L2 LINE L2 -1 3271 3168 353 272 28 176 chr6 53754637 53754761 -128660481 - L2 LINE L2 -45 3227 3086 2328 88 0 0 chr6 53754761 53755056 -128660186 + AluY SINE Alu 1 295 -16 353 272 28 176 chr6 53755056 53755284 -128659958 - L2 LINE L2 -186 3086 2927 542 65 39 0 chr6 53755776 53755853 -128659389 + MADE1 DNA Mariner 1 80 0 251 221 243 29 chr6 53756064 53756200 -128659042 + L1ME4a LINE L1 5888 6052 -69 405 260 31 8 chr6 53757446 53757573 -128657669 + CT-rich Low_complexity Low_complexity 1 130 0 391 312 88 10 chr6 53759276 53759481 -128655761 + MIR SINE MIR 40 260 -2 5219 205 40 43 chr6 53761451 53762736 -128652506 + MER31A-int LTR ERV1 173 1453 -3483 8573 189 110 110 chr6 53762747 53763238 -128652004 + MER31A-int LTR ERV1 1632 2122 -2814 1843 174 6 3 chr6 53763238 53763549 -128651693 - AluSx SINE Alu 0 312 1 8573 189 110 110 chr6 53763549 53766341 -128648901 + MER31A-int LTR ERV1 2122 4918 -18 2076 178 46 33 chr6 53766341 53766820 -128648422 + MER31A LTR ERV1 1 485 0 339 85 0 0 chr6 53767721 53767768 -128647474 + (TG)n Simple_repeat Simple_repeat 2 48 0 598 220 9 142 chr6 53770653 53770842 -128644400 + MER5A DNA MER1_type 1 159 -30 2105 191 8 46 chr6 53770842 53771346 -128643896 + MER31A LTR ERV1 1 485 0 598 220 9 142 chr6 53771346 53771374 -128643868 + MER5A DNA MER1_type 159 189 0 3601 186 65 6 chr6 53771635 53772362 -128642880 + Tigger7 DNA MER2_type 1 770 -1717 1987 150 36 6 chr6 53772362 53772721 -128642521 + Tigger7 DNA MER2_type 2218 2587 0 1881 106 12 81 chr6 53773666 53773988 -128641254 + AluSx SINE Alu 1 300 -12 877 301 48 15 chr6 53774251 53774647 -128640595 + L1ME3A LINE L1 5540 5948 -222 228 336 32 16 chr6 53774797 53774922 -128640320 + L1ME3A LINE L1 6029 6155 -15 293 308 79 75 chr6 53774940 53775206 -128640036 + L3 LINE CR1 457 723 -854 629 231 154 0 chr6 53775213 53775369 -128639873 - MER5A DNA MER1_type 0 189 10 208 339 0 0 chr6 53775378 53775434 -128639808 + MIR3 SINE MIR 153 208 0 362 290 231 12 chr6 53775954 53776123 -128639119 - MIR SINE MIR -13 249 44 426 257 0 20 chr6 53779862 53779963 -128635279 + MER58A DNA MER1_type 3 101 -6 514 307 88 14 chr6 53780858 53781073 -128634169 - MIR SINE MIR -1 261 31 253 364 45 15 chr6 53781088 53781220 -128634022 + L2 LINE L2 3137 3272 0 1869 197 22 11 chr6 53782874 53783235 -128632007 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr6 53783325 53783345 -128631897 + (A)n Simple_repeat Simple_repeat 1 20 0 1348 138 37 32 chr6 53784405 53784623 -128630619 + MER20 DNA MER1_type 1 219 0 463 207 96 22 chr6 53785817 53785952 -128629290 + MIR SINE MIR 81 225 -37 302 384 75 0 chr6 53787267 53787400 -128627842 + L2 LINE L2 3126 3268 -4 473 331 14 7 chr6 53789346 53789494 -128625748 - MER5B DNA MER1_type -1 177 29 21 0 0 0 chr6 53790013 53790034 -128625208 + AT_rich Low_complexity Low_complexity 1 21 0 268 213 0 16 chr6 53790284 53790345 -128624897 - MIR SINE MIR -133 129 70 713 128 183 49 chr6 53792208 53792372 -128622870 - MER53 DNA DNA -3 186 1 261 75 0 0 chr6 53792478 53792518 -128622724 + (T)n Simple_repeat Simple_repeat 1 40 0 606 253 35 29 chr6 53793338 53793508 -128621734 + MER5B DNA MER1_type 4 174 -4 751 191 145 0 chr6 53793510 53793662 -128621580 - MER5A DNA MER1_type -15 174 1 22 0 0 0 chr6 53793865 53793887 -128621355 + AT_rich Low_complexity Low_complexity 1 22 0 244 291 0 0 chr6 53794367 53794422 -128620820 - MIR SINE MIR -7 255 201 471 210 40 0 chr6 53794431 53794531 -128620711 + MER5A DNA MER1_type 9 112 -77 232 202 273 30 chr6 53794458 53794557 -128620685 - MER5A DNA MER1_type -24 165 43 * 1979 99 4 4 chr6 53794667 53794939 -128620303 + AluSc SINE Alu 1 272 -37 288 0 0 0 chr6 53794943 53794975 -128620267 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 511 325 53 60 chr6 53795135 53795418 -128619824 + L2 LINE L2 2989 3269 -3 1755 175 10 3 chr6 53795723 53796020 -128619222 - AluJb SINE Alu -12 300 2 477 263 154 6 chr6 53796779 53796935 -128618307 - MER5A DNA MER1_type -7 182 4 423 288 12 82 chr6 53798090 53798260 -128616982 - MIR3 SINE MIR -7 201 44 488 338 46 25 chr6 53798731 53798971 -128616271 + MIR SINE MIR 3 247 -15 277 93 47 0 chr6 53801343 53801386 -128613856 - Alu SINE Alu -5 297 253 292 400 0 8 chr6 53801389 53801509 -128613733 + L2 LINE L2 3154 3272 0 191 130 0 22 chr6 53803047 53803093 -128612149 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 244 241 0 0 chr6 53804943 53805001 -128610241 - L2 LINE L2 0 3272 3215 510 288 93 25 chr6 53805066 53805302 -128609940 - MIR SINE MIR -3 259 8 2354 101 0 0 chr6 53806421 53806717 -128608525 + AluSx SINE Alu 1 296 -16 2956 187 59 26 chr6 53806717 53807367 -128607875 - L1MC2 LINE L1 -12 6332 5658 239 283 76 28 chr6 53808418 53808563 -128606679 + L2 LINE L2 2592 2743 -571 1725 188 10 3 chr6 53810310 53810613 -128604629 + AluJo SINE Alu 1 305 -7 188 293 27 0 chr6 53810646 53810721 -128604521 - MIR SINE MIR 0 262 186 682 70 0 12 chr6 53811484 53811570 -128603672 + AluSp/q SINE Alu 190 274 -39 1208 70 19 16 chr6 53811573 53811889 -128603353 + (GAAA)n Simple_repeat Simple_repeat 1 317 0 317 305 178 35 chr6 53813509 53813706 -128601536 + L1M4c LINE L1 1265 1489 -4895 377 258 121 71 chr6 53815049 53815279 -128599963 - MIR SINE MIR -11 251 14 371 285 65 8 chr6 53816564 53816687 -128598555 + MIR SINE MIR 56 185 -77 209 343 119 8 chr6 53817697 53817831 -128597411 - L2 LINE L2 -5 3267 3119 274 351 34 40 chr6 53819736 53819884 -128595358 - L2 LINE L2 -8 3264 3118 22 0 0 0 chr6 53819986 53820008 -128595234 + AT_rich Low_complexity Low_complexity 1 22 0 2042 120 7 7 chr6 53820329 53820621 -128594621 + AluSq SINE Alu 1 292 -21 367 287 102 6 chr6 53822562 53822662 -128592580 + L1MC4 LINE L1 6516 6638 -1404 588 54 81 0 chr6 53822662 53822736 -128592506 - MADE1 DNA Mariner 0 80 1 367 287 102 6 chr6 53822736 53822792 -128592450 + L1MC4 LINE L1 6638 6687 -1355 1356 231 285 19 chr6 53822837 53823616 -128591626 + L1MC4a LINE L1 6937 7857 -5 2074 117 28 3 chr6 53823977 53824268 -128590974 + AluSx SINE Alu 1 298 -14 27 0 0 0 chr6 53824937 53824964 -128590278 + AT_rich Low_complexity Low_complexity 1 27 0 204 192 0 39 chr6 53826044 53826122 -128589120 + C-rich Low_complexity Low_complexity 2 76 0 2076 135 20 0 chr6 53826249 53826552 -128588690 + AluSq SINE Alu 1 309 -4 828 165 8 0 chr6 53828438 53828559 -128586683 + FLAM_C SINE Alu 3 124 -19 321 286 56 36 chr6 53828595 53828791 -128586451 - L2 LINE L2 -3 3310 3111 1175 236 111 39 chr6 53830868 53831301 -128583941 + L1ME3 LINE L1 5657 6120 -42 1217 270 137 20 chr6 53831510 53832051 -128583191 + L1MC4 LINE L1 7326 7929 -113 206 200 0 0 chr6 53832051 53832086 -128583156 + polypurine Low_complexity Low_complexity 2 36 0 1129 249 77 12 chr6 53832101 53832438 -128582804 - LTR52 LTR ERVL -2 419 61 508 261 110 43 chr6 53833421 53833720 -128581522 + L1MC4a LINE L1 5613 5931 -1877 207 0 0 0 chr6 53835985 53836008 -128579234 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 198 0 0 0 chr6 53836181 53836203 -128579039 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 56 0 0 chr6 53837544 53837580 -128577662 + AT_rich Low_complexity Low_complexity 1 36 0 215 337 0 21 chr6 53839386 53839481 -128575761 + G-rich Low_complexity Low_complexity 1 93 0 498 91 0 0 chr6 53839613 53839690 -128575552 + (TC)n Simple_repeat Simple_repeat 1 77 0 255 61 0 0 chr6 53841076 53841109 -128574133 + (TG)n Simple_repeat Simple_repeat 2 34 0 1576 295 57 29 chr6 53842652 53843412 -128571830 + L2 LINE L2 1644 2424 -890 491 266 114 52 chr6 53843448 53843835 -128571407 + L2 LINE L2 2836 3246 -67 207 0 0 0 chr6 53843978 53844001 -128571241 + (TG)n Simple_repeat Simple_repeat 2 24 0 238 250 0 28 chr6 53844068 53844140 -128571102 + T-rich Low_complexity Low_complexity 5 74 0 1177 196 119 36 chr6 53845934 53846271 -128568971 + MLT1A1 LTR MaLR 1 365 0 2654 287 106 39 chr6 53846736 53847247 -128567995 - L1MC4 LINE L1 -1 8041 7566 1843 158 0 10 chr6 53847247 53847544 -128567698 - AluJb SINE Alu -17 295 2 2654 287 106 39 chr6 53847544 53849248 -128565994 - L1MC4 LINE L1 -476 7566 5684 483 308 31 10 chr6 53849251 53849446 -128565796 - L1MC4 LINE L1 -2062 5746 5548 2072 148 122 10 chr6 53849512 53849897 -128565345 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr6 53849903 53849924 -128565318 + AT_rich Low_complexity Low_complexity 1 21 0 1872 153 0 0 chr6 53850128 53850403 -128564839 + AluSx SINE Alu 3 277 -35 249 33 0 0 chr6 53850403 53850433 -128564809 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 324 298 25 8 chr6 53850446 53850567 -128564675 + MIR SINE MIR 34 156 -106 409 121 24 0 chr6 53850635 53850718 -128564524 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 436 317 11 67 chr6 53850769 53850949 -128564293 + MIR3 SINE MIR 32 201 -7 22 56 0 0 chr6 53851032 53851068 -128564174 + AT_rich Low_complexity Low_complexity 1 36 0 250 245 0 0 chr6 53851275 53851324 -128563918 + polypurine Low_complexity Low_complexity 3 51 0 541 105 35 42 chr6 53851324 53851467 -128563775 + GA-rich Low_complexity Low_complexity 2 143 0 247 135 0 0 chr6 53855540 53855577 -128559665 + MLT1J1 LTR MaLR 67 103 -343 760 237 12 0 chr6 53856004 53856177 -128559065 - MER45A DNA AcHobo 0 178 4 1273 211 163 27 chr6 53856601 53857042 -128558200 + MLT1D LTR MaLR 5 505 0 267 176 0 0 chr6 53857420 53857471 -128557771 + L1MC4 LINE L1 6653 6703 -1339 1921 213 49 8 chr6 53857484 53857984 -128557258 - L1MB3 LINE L1 -15 6168 5656 595 168 9 9 chr6 53858087 53858194 -128557048 - HERV15 LTR ERV1 -1329 7406 7300 40 37 0 0 chr6 53859215 53859269 -128555973 + GC_rich Low_complexity Low_complexity 1 54 0 495 233 0 0 chr6 53861971 53862100 -128553142 + (TG)n Simple_repeat Simple_repeat 1 129 0 1171 243 61 19 chr6 53863270 53863649 -128551593 - MLT1C LTR MaLR -6 461 67 999 294 100 23 chr6 53864438 53864462 -128550780 - L2 LINE L2 0 3313 3292 2336 92 0 10 chr6 53864462 53864765 -128550477 + AluSx SINE Alu 1 300 -12 999 294 100 23 chr6 53864765 53865536 -128549706 - L2 LINE L2 -21 3292 2450 1571 162 111 30 chr6 53865564 53865897 -128549345 - MLT1A1 LTR MaLR -5 360 1 1746 171 10 13 chr6 53865940 53866238 -128549004 + AluJo SINE Alu 2 298 -14 554 267 63 51 chr6 53866266 53866657 -128548585 + L1MEd LINE L1 895 1257 -4862 25 31 0 0 chr6 53868111 53868143 -128547099 + AT_rich Low_complexity Low_complexity 1 32 0 1541 247 102 35 chr6 53868154 53868673 -128546569 + MLT2B3 LTR ERVL 1 554 0 299 256 47 0 chr6 53868890 53868976 -128546266 + L1ME LINE L1 1064 1153 -5481 1645 275 77 41 chr6 53869014 53870407 -128544835 + L1ME LINE L1 1216 2558 -4086 225 0 0 0 chr6 53870407 53870432 -128544810 + (CA)n Simple_repeat Simple_repeat 2 26 0 1645 275 77 41 chr6 53870432 53870825 -128544417 + L1ME LINE L1 2558 3941 -2703 441 292 56 22 chr6 53870932 53871110 -128544132 + L1ME LINE L1 3940 4123 -2521 4189 189 78 8 chr6 53871231 53872087 -128543155 + L1ME1 LINE L1 219 1134 -5510 1501 245 89 22 chr6 53872105 53872216 -128543026 + L1ME1 LINE L1 4692 4794 -1850 4646 136 19 42 chr6 53872216 53873028 -128542214 + MER54B LTR ERVL 1 793 0 1501 245 89 22 chr6 53873028 53873512 -128541730 + L1ME1 LINE L1 4794 5327 -1317 2118 205 18 50 chr6 53873512 53874058 -128541184 + MLT2B3 LTR ERVL 1 415 -38 231 173 0 0 chr6 53874058 53874110 -128541132 + (TA)n Simple_repeat Simple_repeat 2 53 0 341 204 0 82 chr6 53874116 53874214 -128541028 + L1MC4 LINE L1 6614 6703 -1339 342 94 57 0 chr6 53874221 53874274 -128540968 + MLT2B1 LTR ERVL 464 519 -1 1559 263 64 25 chr6 53874276 53874718 -128540524 + L1ME1 LINE L1 5324 5747 -917 605 64 13 0 chr6 53874718 53874796 -128540446 + MADE1 DNA Mariner 1 79 -1 1559 263 64 25 chr6 53874796 53875299 -128539943 + L1ME1 LINE L1 5747 6295 -369 263 144 56 0 chr6 53875328 53875453 -128539789 + (TA)n Simple_repeat Simple_repeat 1 132 0 295 272 95 15 chr6 53875462 53875597 -128539645 - L1MB8 LINE L1 -203 5975 5831 493 144 38 24 chr6 53875605 53876113 -128539129 + (TA)n Simple_repeat Simple_repeat 1 515 0 309 213 113 40 chr6 53876113 53876263 -128538979 - L1MCa LINE L1 -4359 2067 1907 464 148 49 8 chr6 53876283 53876547 -128538695 + (TA)n Simple_repeat Simple_repeat 1 274 0 380 328 85 0 chr6 53876547 53876736 -128538506 + L1ME1 LINE L1 6317 6521 -143 266 240 24 32 chr6 53876742 53876841 -128538401 + L1ME1 LINE L1 6580 6675 -1 * 463 261 0 8 chr6 53876835 53876954 -128538288 + L1ME1 LINE L1 3494 3611 -2535 673 202 166 45 chr6 53876956 53877179 -128538063 + L1ME1 LINE L1 5602 5851 -311 713 185 47 181 chr6 53877181 53877413 -128537829 - MLT1A2 LTR MaLR -2 372 173 238 214 18 0 chr6 53877413 53877469 -128537773 + GA-rich Low_complexity Low_complexity 4 60 0 636 168 0 42 chr6 53877494 53877542 -128537700 - MLT1A2 LTR MaLR -251 114 66 2873 157 232 90 chr6 53877542 53878435 -128536807 - LTR28 LTR ERV1 0 1020 1 636 168 0 42 chr6 53878435 53878505 -128536737 - MLT1A2 LTR MaLR -299 66 1 604 298 104 7 chr6 53878505 53878784 -128536458 + L1ME1 LINE L1 5844 6149 -17 189 0 0 0 chr6 53879703 53879724 -128535518 + (T)n Simple_repeat Simple_repeat 1 21 0 242 111 93 37 chr6 53880227 53880281 -128534961 - LTR16A1 LTR ERVL -333 124 68 303 28 0 0 chr6 53881221 53881257 -128533985 + (TG)n Simple_repeat Simple_repeat 1 36 0 630 209 162 80 chr6 53882566 53882991 -128532251 + LTR40b LTR ERVL 1 460 -2 603 242 33 97 chr6 53883384 53883839 -128531403 + L1MEc LINE L1 1847 2272 -4124 388 179 66 0 chr6 53884024 53884175 -128531067 + (TA)n Simple_repeat Simple_repeat 2 162 0 536 239 62 8 chr6 53884182 53884312 -128530930 - MER58A DNA MER1_type 0 138 2 2206 252 29 41 chr6 53884379 53885216 -128530026 + L1MEc LINE L1 2321 3147 -3068 259 263 70 58 chr6 53885323 53885479 -128529763 + L1M4b LINE L1 89 246 -6613 397 213 7 182 chr6 53886059 53886350 -128528892 + L1M4b LINE L1 1206 1445 -5414 316 130 0 0 chr6 53886347 53886401 -128528841 - L1M1 LINE L1 -5234 2331 2278 * 230 220 165 0 chr6 53886417 53886508 -128528734 - L1M4 LINE L1 -856 5290 5185 874 259 86 36 chr6 53886549 53887047 -128528195 - LTR33A LTR ERVL 0 523 1 410 248 0 8 chr6 53887065 53887182 -128528060 - L1M4 LINE L1 -1114 5032 4917 2431 110 16 16 chr6 53887209 53887582 -128527660 + THE1C LTR MaLR 1 373 -2 21 0 0 0 chr6 53887607 53887628 -128527614 + AT_rich Low_complexity Low_complexity 1 21 0 1788 174 10 10 chr6 53887926 53888236 -128527006 + AluJb SINE Alu 1 310 -2 1516 198 23 20 chr6 53889078 53889421 -128525821 - MLT1C LTR MaLR -122 345 2 6186 97 0 6 chr6 53889484 53890365 -128524877 - L1PB1 LINE L1 -1 6150 5275 10655 203 14 11 chr6 53890368 53892744 -128522498 - L1PB1 LINE L1 -1544 4602 2219 24 53 0 0 chr6 53892823 53892861 -128522381 + AT_rich Low_complexity Low_complexity 1 38 0 4443 152 18 18 chr6 53893161 53893899 -128521343 + LTR39 LTR ERV1 46 783 0 429 215 160 76 chr6 53893900 53894137 -128521105 - L1MCc LINE L1 -5002 1421 1165 1091 253 81 39 chr6 53894317 53894748 -128520494 - L1MCc LINE L1 -5950 473 25 2098 117 3 0 chr6 53895560 53895865 -128519377 + AluSx SINE Alu 1 306 0 246 329 132 6 chr6 53896035 53896202 -128519040 + MIR3 SINE MIR 3 190 -18 314 205 26 51 chr6 53897091 53897169 -128518073 + L2 LINE L2 3232 3307 -6 198 233 81 70 chr6 53897372 53897458 -128517784 - MIR SINE MIR -10 252 166 514 176 0 0 chr6 53897956 53898047 -128517195 - MIR SINE MIR -100 162 72 287 328 146 46 chr6 53898121 53898490 -128516752 - L2 LINE L2 -6 3307 2902 26 0 0 0 chr6 53898667 53898693 -128516549 + AT_rich Low_complexity Low_complexity 1 26 0 422 305 81 5 chr6 53899223 53899420 -128515822 - MLT1I LTR MaLR 0 409 198 304 252 35 43 chr6 53899460 53899575 -128515667 - MLT1I LTR MaLR -287 122 9 249 228 174 22 chr6 53899693 53899785 -128515457 - LTR33A LTR ERVL 0 523 418 596 272 38 16 chr6 53899998 53900182 -128515060 + L1MC4 LINE L1 7713 7900 -142 470 289 52 83 chr6 53900266 53900685 -128514557 - ERVL LTR ERVL -631 5133 4728 31 0 0 0 chr6 53900726 53900757 -128514485 + AT_rich Low_complexity Low_complexity 1 31 0 974 251 11 31 chr6 53900825 53901112 -128514130 - L1ME1 LINE L1 -122 6113 5833 * 4158 263 48 24 chr6 53901107 53902728 -128512514 - L1ME1 LINE L1 -1397 4818 3160 497 43 0 14 chr6 53902728 53902797 -128512445 + (TTTC)n Simple_repeat Simple_repeat 4 71 0 1727 153 8 0 chr6 53902797 53903059 -128512183 - AluSx SINE Alu -48 264 1 519 244 48 18 chr6 53903079 53903247 -128511995 - L1ME1 LINE L1 -3355 2860 2688 1646 233 31 42 chr6 53903247 53903694 -128511548 + MLT1D LTR MaLR 2 443 -62 589 252 43 50 chr6 53903697 53903979 -128511263 - L1MD2 LINE L1 -12 6347 6068 1031 188 0 73 chr6 53903982 53904227 -128511015 + AluJo SINE Alu 81 307 -5 335 162 26 86 chr6 53904251 53904368 -128510874 - L1MD2 LINE L1 -298 6061 5952 928 161 19 0 chr6 53904380 53904541 -128510701 - L1MC1 LINE L1 0 6333 6170 304 242 0 0 chr6 53904541 53904607 -128510635 + MLT1D LTR MaLR 440 505 0 3083 256 63 32 chr6 53904607 53906359 -128508883 - L1ME1 LINE L1 -3522 2693 922 1866 293 26 28 chr6 53906365 53907163 -128508079 - L1ME1 LINE L1 -5563 833 37 283 316 35 9 chr6 53907995 53908109 -128507133 - LTR16A LTR ERVL -159 291 175 464 279 38 27 chr6 53908405 53908588 -128506654 + L2 LINE L2 2398 2582 -732 927 287 46 52 chr6 53908588 53909196 -128506046 + L2 LINE L2 2708 3305 -8 187 231 0 58 chr6 53909473 53909525 -128505717 + MIR3 SINE MIR 160 208 0 1940 147 17 0 chr6 53911259 53911559 -128503683 - AluSx SINE Alu -5 307 3 254 314 141 63 chr6 53911724 53912043 -128503199 + L3 LINE CR1 494 837 -740 258 268 359 4 chr6 53912107 53912338 -128502904 + L3 LINE CR1 982 1294 -283 1286 108 0 5 chr6 53912368 53912554 -128502688 - L1P4 LINE L1 -578 5590 5406 207 194 0 0 chr6 53912718 53912754 -128502488 + A-rich Low_complexity Low_complexity 3 38 0 391 312 88 10 chr6 53912823 53913028 -128502214 + MIR SINE MIR 40 260 -2 5219 205 40 43 chr6 53914997 53916282 -128498960 + MER31A-int LTR ERV1 173 1453 -3483 8573 189 110 110 chr6 53916293 53916784 -128498458 + MER31A-int LTR ERV1 1632 2122 -2814 1843 174 6 3 chr6 53916784 53917095 -128498147 - AluSx SINE Alu 0 312 1 8573 189 110 110 chr6 53917095 53919887 -128495355 + MER31A-int LTR ERV1 2122 4918 -18 2076 178 46 33 chr6 53919887 53920366 -128494876 + MER31A LTR ERV1 1 485 0 339 85 0 0 chr6 53921267 53921314 -128493928 + (TG)n Simple_repeat Simple_repeat 2 48 0 598 220 9 142 chr6 53924199 53924388 -128490854 + MER5A DNA MER1_type 1 159 -30 2105 191 8 46 chr6 53924388 53924892 -128490350 + MER31A LTR ERV1 1 485 0 598 220 9 142 chr6 53924892 53924920 -128490322 + MER5A DNA MER1_type 159 189 0 3497 193 65 6 chr6 53925181 53925908 -128489334 + Tigger7 DNA MER2_type 1 770 -1717 1987 150 36 6 chr6 53925908 53926267 -128488975 + Tigger7 DNA MER2_type 2218 2587 0 1881 106 12 81 chr6 53927212 53927534 -128487708 + AluSx SINE Alu 1 300 -12 877 301 48 15 chr6 53927797 53928193 -128487049 + L1ME3A LINE L1 5540 5948 -222 228 336 32 16 chr6 53928343 53928468 -128486774 + L1ME3A LINE L1 6029 6155 -15 293 308 79 75 chr6 53928486 53928752 -128486490 + L3 LINE CR1 457 723 -854 629 231 154 0 chr6 53928759 53928915 -128486327 - MER5A DNA MER1_type 0 189 10 208 339 0 0 chr6 53928924 53928980 -128486262 + MIR3 SINE MIR 153 208 0 362 290 231 12 chr6 53929499 53929668 -128485574 - MIR SINE MIR -13 249 44 443 248 0 20 chr6 53933407 53933508 -128481734 + MER58A DNA MER1_type 3 101 -6 517 312 88 14 chr6 53934403 53934618 -128480624 - MIR SINE MIR -1 261 31 266 364 45 15 chr6 53934633 53934765 -128480477 + L2 LINE L2 3137 3272 0 1728 191 22 11 chr6 53936419 53936780 -128478462 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr6 53936870 53936890 -128478352 + (A)n Simple_repeat Simple_repeat 1 20 0 183 241 63 38 chr6 53937814 53937893 -128477349 + L3b LINE CR1 1309 1389 -194 1244 138 37 32 chr6 53937949 53938167 -128477075 + MER20 DNA MER1_type 1 219 0 458 215 96 22 chr6 53939361 53939496 -128475746 + MIR SINE MIR 81 225 -37 318 385 74 0 chr6 53940811 53940946 -128474296 + L2 LINE L2 3126 3270 -2 483 331 14 7 chr6 53942890 53943038 -128472204 - MER5B DNA MER1_type -1 177 29 21 0 0 0 chr6 53943557 53943578 -128471664 + AT_rich Low_complexity Low_complexity 1 21 0 268 213 0 16 chr6 53943828 53943889 -128471353 - MIR SINE MIR -133 129 70 657 122 183 49 chr6 53945752 53945916 -128469326 - MER53 DNA DNA -3 186 1 243 79 0 0 chr6 53946022 53946060 -128469182 + (T)n Simple_repeat Simple_repeat 1 38 0 568 288 12 6 chr6 53946880 53947050 -128468192 + MER5B DNA MER1_type 4 174 -4 742 191 145 0 chr6 53947052 53947204 -128468038 - MER5A DNA MER1_type -15 174 1 22 0 0 0 chr6 53947407 53947429 -128467813 + AT_rich Low_complexity Low_complexity 1 22 0 235 309 0 0 chr6 53947909 53947964 -128467278 - MIR SINE MIR -7 255 201 466 210 40 0 chr6 53947973 53948073 -128467169 + MER5A DNA MER1_type 9 112 -77 218 212 273 30 chr6 53948000 53948099 -128467143 - MER5A DNA MER1_type -24 165 43 * 1968 99 4 4 chr6 53948209 53948481 -128466761 + AluSc SINE Alu 1 272 -37 216 0 0 0 chr6 53948485 53948509 -128466733 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 481 334 113 47 chr6 53948615 53949022 -128466220 + L2 LINE L2 2836 3269 -3 1755 175 10 3 chr6 53949327 53949624 -128465618 - AluJb SINE Alu -12 300 2 486 263 154 6 chr6 53950383 53950539 -128464703 - MER5A DNA MER1_type -7 182 4 423 288 12 82 chr6 53951698 53951868 -128463374 - MIR3 SINE MIR -7 201 44 505 342 46 25 chr6 53952339 53952579 -128462663 + MIR SINE MIR 3 247 -15 276 91 45 0 chr6 53954950 53954994 -128460248 - Alu SINE Alu -4 298 253 297 403 0 8 chr6 53954997 53955116 -128460126 + L2 LINE L2 3154 3271 -1 203 130 0 22 chr6 53956656 53956702 -128458540 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 204 244 16 65 chr6 53957527 53957650 -128457592 + (CACCC)n Simple_repeat Simple_repeat 5 121 0 30 27 0 0 chr6 53957714 53957751 -128457491 + GC_rich Low_complexity Low_complexity 1 37 0 241 270 0 0 chr6 53957991 53958054 -128457188 + G-rich Low_complexity Low_complexity 1 63 0 198 103 0 0 chr6 53958511 53958540 -128456702 + (TG)n Simple_repeat Simple_repeat 2 30 0 345 24 0 0 chr6 53958965 53959007 -128456235 + (TG)n Simple_repeat Simple_repeat 2 43 0 387 367 114 13 chr6 53959382 53959619 -128455623 - L3 LINE CR1 -15 1562 1302 295 372 26 0 chr6 53959862 53959975 -128455267 - MIR SINE MIR -65 143 28 260 216 95 0 chr6 53960282 53960356 -128454886 + L1ME4a LINE L1 5955 6035 -86 5101 171 69 75 chr6 53960380 53960973 -128454269 - L1MC3 LINE L1 -20 7765 7169 306 196 0 0 chr6 53960973 53961024 -128454218 - MLT1F1 LTR MaLR -465 102 52 5101 171 69 75 chr6 53961024 53961704 -128453538 - L1MC3 LINE L1 -616 7169 6451 36 62 0 0 chr6 53961712 53961776 -128453466 + AT_rich Low_complexity Low_complexity 1 64 0 240 371 48 0 chr6 53962142 53962266 -128452976 + MIR3 SINE MIR 4 133 -75 342 308 119 71 chr6 53962364 53962760 -128452482 - MLT1J2 LTR MaLR -15 435 21 1007 243 169 21 chr6 53963072 53963492 -128451750 - MLT1L LTR MaLR -42 573 92 252 0 0 0 chr6 53963516 53963544 -128451698 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 24 100 0 0 chr6 53963779 53963859 -128451383 + AT_rich Low_complexity Low_complexity 1 80 0 8479 178 45 91 chr6 53964426 53966954 -128448288 - Tigger1 DNA MER2_type -6 2412 1 246 246 0 16 chr6 53967494 53967555 -128447687 + CT-rich Low_complexity Low_complexity 1 60 0 2483 46 3 3 chr6 53967687 53967990 -128447252 + AluY SINE Alu 1 303 -8 704 228 38 0 chr6 53968479 53968637 -128446605 - MER97b DNA MER1_type? -874 179 16 261 0 0 0 chr6 53968821 53968850 -128446392 + (T)n Simple_repeat Simple_repeat 1 29 0 680 251 29 48 chr6 53970194 53970401 -128444841 + MIR SINE MIR 2 204 -58 26 30 0 0 chr6 53970433 53970466 -128444776 + AT_rich Low_complexity Low_complexity 1 33 0 228 331 69 23 chr6 53970662 53970792 -128444450 - MIR SINE MIR -16 246 111 305 306 29 46 chr6 53971366 53971539 -128443703 - HAL1 LINE L1 -36 2471 2302 27 29 0 0 chr6 53971690 53971724 -128443518 + AT_rich Low_complexity Low_complexity 1 34 0 180 163 0 0 chr6 53971978 53972021 -128443221 + (TA)n Simple_repeat Simple_repeat 1 43 0 894 114 64 121 chr6 53972035 53972299 -128442943 - Cheshire DNA MER1_type -1 2419 2171 1998 247 72 34 chr6 53972300 53972895 -128442347 + MLT1E2 LTR MaLR 1 618 -8 2441 194 40 65 chr6 53972909 53973572 -128441670 - Cheshire DNA MER1_type -247 2173 1528 2013 119 3 35 chr6 53973572 53973884 -128441358 - AluSx SINE Alu 0 312 11 2441 194 40 65 chr6 53973884 53973943 -128441299 - Cheshire DNA MER1_type -892 1528 1469 5483 228 42 8 chr6 53973954 53975269 -128439973 - Cheshire DNA MER1_type -1060 1360 1 25 31 0 0 chr6 53975797 53975829 -128439413 + AT_rich Low_complexity Low_complexity 1 32 0 574 310 75 5 chr6 53976334 53976534 -128438708 - MIR SINE MIR -1 261 48 21 36 0 0 chr6 53976820 53976848 -128438394 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 53976881 53976916 -128438326 + AT_rich Low_complexity Low_complexity 1 35 0 2065 131 0 7 chr6 53977612 53977917 -128437325 + AluSq SINE Alu 1 303 -10 195 286 57 76 chr6 53979232 53979337 -128435905 - MIR SINE MIR -27 235 133 22 56 0 0 chr6 53979832 53979868 -128435374 + AT_rich Low_complexity Low_complexity 1 36 0 188 43 64 21 chr6 53980117 53980164 -128435078 + (TAA)n Simple_repeat Simple_repeat 1 49 0 443 221 255 0 chr6 53980190 53980339 -128434903 + MER5A DNA MER1_type 2 188 -1 355 272 141 0 chr6 53980332 53980424 -128434818 + MER5A DNA MER1_type 1 105 -84 * 243 88 0 0 chr6 53980456 53980490 -128434752 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 2021 125 7 13 chr6 53980490 53980793 -128434449 - AluSx SINE Alu -4 308 8 393 75 0 0 chr6 53980829 53980882 -128434360 + (CA)n Simple_repeat Simple_repeat 2 54 0 535 235 8 17 chr6 53982038 53982157 -128433085 - MIR3 SINE MIR 0 208 91 21 71 0 0 chr6 53982221 53982263 -128432979 + AT_rich Low_complexity Low_complexity 1 42 0 790 257 17 59 chr6 53983673 53984035 -128431207 + L1ME1 LINE L1 5814 6310 -24 2207 92 3 22 chr6 53984252 53984568 -128430674 + AluY SINE Alu 1 310 -1 213 343 128 0 chr6 53984847 53984949 -128430293 - L2 LINE L2 -45 3268 3154 21 0 0 0 chr6 53984956 53984977 -128430265 + AT_rich Low_complexity Low_complexity 1 21 0 2265 109 0 0 chr6 53985185 53985489 -128429753 + AluSx SINE Alu 6 309 -3 28 86 0 0 chr6 53986045 53986115 -128429127 + AT_rich Low_complexity Low_complexity 1 70 0 258 362 135 6 chr6 53986153 53986316 -128428926 - MIR SINE MIR -30 232 49 2205 127 0 0 chr6 53987178 53987486 -128427756 - AluSx SINE Alu -1 311 4 27 81 0 0 chr6 53989788 53989850 -128425392 + AT_rich Low_complexity Low_complexity 1 62 0 227 217 0 0 chr6 53989896 53989942 -128425300 + A-rich Low_complexity Low_complexity 1 46 0 461 327 43 43 chr6 53989943 53990319 -128424923 + L1M4 LINE L1 2192 2567 -3579 21 0 0 0 chr6 53990477 53990498 -128424744 + AT_rich Low_complexity Low_complexity 1 21 0 43576 42 3 1 chr6 53991326 53997467 -128417775 + L1PA4 LINE L1 1 6155 0 281 265 56 56 chr6 53997658 53997979 -128417263 + L1M4 LINE L1 3175 3495 -2651 3639 180 35 75 chr6 53998297 53999483 -128415759 + L1MA9 LINE L1 5014 6168 -144 339 25 0 0 chr6 53999483 53999523 -128415719 + (CA)n Simple_repeat Simple_repeat 1 40 0 3639 180 35 75 chr6 53999523 53999547 -128415695 + L1MA9 LINE L1 6168 6191 -121 273 29 0 0 chr6 53999629 53999663 -128415579 + (TA)n Simple_repeat Simple_repeat 1 34 0 901 246 134 54 chr6 53999826 54000213 -128415029 + LTR33 LTR ERVL 14 431 -90 186 345 0 0 chr6 54001528 54001583 -128413659 + L3 LINE CR1 40 94 -1483 24 32 0 0 chr6 54003284 54003315 -128411927 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr6 54003349 54003376 -128411866 + AT_rich Low_complexity Low_complexity 1 27 0 253 328 260 0 chr6 54003524 54003728 -128411514 + MIR SINE MIR 5 261 -1 526 172 0 11 chr6 54003874 54003967 -128411275 + MLT1A1 LTR MaLR 1 92 -273 2306 119 0 0 chr6 54004336 54004646 -128410596 - AluSx SINE Alu -2 310 1 236 348 0 18 chr6 54005161 54005273 -128409969 - MIR SINE MIR -56 206 97 22 0 0 0 chr6 54005866 54005888 -128409354 + AT_rich Low_complexity Low_complexity 1 22 0 675 283 104 18 chr6 54005956 54006322 -128408920 - LTR16A LTR ERVL 0 450 59 899 277 20 8 chr6 54006919 54007168 -128408074 + MIR SINE MIR 1 252 -10 206 364 35 7 chr6 54007263 54007455 -128407787 - MIR SINE MIR -49 213 13 1060 180 127 42 chr6 54008942 54009226 -128406016 + MLT1A1 LTR MaLR 58 365 0 334 323 68 56 chr6 54009485 54009736 -128405506 - L3 LINE CR1 -192 1385 1132 376 283 88 0 chr6 54009884 54009997 -128405245 - MIR SINE MIR -82 180 58 470 315 82 43 chr6 54010353 54010610 -128404632 - L3 LINE CR1 -694 883 617 3514 142 25 15 chr6 54010665 54011164 -128404078 - L1PA15 LINE L1 -321 5844 5338 1781 127 25 81 chr6 54011164 54011290 -128403952 + AluSx SINE Alu 1 132 -180 225 0 0 0 chr6 54011290 54011315 -128403927 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1781 127 25 81 chr6 54011315 54011510 -128403732 + AluSx SINE Alu 132 304 -8 3514 142 25 15 chr6 54011510 54011896 -128403346 - L1PA15 LINE L1 -827 5338 4957 1823 145 0 22 chr6 54011896 54012210 -128403032 + L1PA15 LINE L1 5849 6165 0 242 395 43 0 chr6 54012365 54012527 -128402715 - MIR SINE MIR -81 181 13 192 26 53 26 chr6 54012921 54012959 -128402283 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2303 95 0 0 chr6 54013075 54013379 -128401863 - AluY SINE Alu -7 304 1 207 100 0 0 chr6 54013911 54013941 -128401301 + (A)n Simple_repeat Simple_repeat 1 30 0 266 344 52 0 chr6 54014569 54014665 -128400577 - MIR SINE MIR -76 132 32 296 233 0 0 chr6 54014783 54014843 -128400399 - MIR SINE MIR -105 157 98 434 289 12 64 chr6 54015380 54015553 -128399689 - MIR SINE MIR -2 260 97 217 246 0 0 chr6 54015873 54015930 -128399312 + T-rich Low_complexity Low_complexity 1 57 0 199 310 46 23 chr6 54016013 54016100 -128399142 - L2 LINE L2 -1 3312 3224 192 319 0 0 chr6 54016387 54016434 -128398808 - MIR SINE MIR -90 118 72 288 269 21 21 chr6 54016623 54016716 -128398526 + MIR SINE MIR 109 201 -61 217 341 85 62 chr6 54017070 54017199 -128398043 - L2 LINE L2 -81 3191 3060 861 178 22 109 chr6 54018863 54019093 -128396149 - MER6B DNA MER2_type 0 210 1 2577 201 32 87 chr6 54019099 54019497 -128395745 - L1MA10 LINE L1 -17 6157 5739 450 65 0 0 chr6 54019497 54019559 -128395683 + (TA)n Simple_repeat Simple_repeat 1 62 0 2577 201 32 87 chr6 54019559 54019655 -128395587 - L1MA10 LINE L1 -435 5739 5639 257 0 30 0 chr6 54019655 54019688 -128395554 + (TA)n Simple_repeat Simple_repeat 2 35 0 2577 201 32 87 chr6 54019688 54020668 -128394574 - L1MA10 LINE L1 -535 5639 4862 1101 188 26 146 chr6 54020670 54021095 -128394147 - MLT1A2 LTR MaLR 0 374 1 22 0 0 0 chr6 54021295 54021317 -128393925 + AT_rich Low_complexity Low_complexity 1 22 0 281 336 20 40 chr6 54021366 54021515 -128393727 - L2 LINE L2 -188 3084 2939 819 354 63 17 chr6 54021549 54022140 -128393102 - L2 LINE L2 -467 2847 2230 1579 190 14 7 chr6 54023757 54024052 -128391190 - AluJo SINE Alu -15 297 1 1856 226 73 27 chr6 54024294 54024811 -128390431 - MLT1F LTR MaLR 0 542 2 186 43 0 0 chr6 54025718 54025741 -128389501 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 244 290 21 65 chr6 54026025 54026211 -128389031 + L1M4c LINE L1 1326 1503 -4881 2397 143 40 12 chr6 54026255 54026676 -128388566 - L1PA16 LINE L1 -10 6156 5724 1516 234 43 5 chr6 54028228 54028604 -128386638 - MLT1B LTR MaLR 0 390 1 2386 75 0 7 chr6 54029615 54029910 -128385332 - AluY SINE Alu -18 293 1 495 262 138 24 chr6 54029934 54030144 -128385098 + MER106A DNA MER1_type 1 234 -2 1232 211 91 4 chr6 54031695 54031970 -128383272 + AluJo SINE Alu 1 299 -13 386 331 25 8 chr6 54032069 54032190 -128383052 + L2 LINE L2 3188 3310 -3 195 162 0 0 chr6 54032240 54032277 -128382965 + (TA)n Simple_repeat Simple_repeat 2 38 0 278 264 50 57 chr6 54032502 54032642 -128382600 - HAL1 LINE L1 0 2507 2369 285 254 0 0 chr6 54032771 54032830 -128382412 + L2 LINE L2 3246 3304 -9 252 318 75 9 chr6 54034477 54034584 -128380658 + MIR3 SINE MIR 74 187 -21 180 0 0 0 chr6 54036303 54036323 -128378919 + (A)n Simple_repeat Simple_repeat 1 20 0 187 283 115 106 chr6 54036691 54036804 -128378438 - MIR SINE MIR -65 143 30 189 116 23 116 chr6 54036851 54036894 -128378348 - L2 LINE L2 -76 3237 3199 464 284 75 50 chr6 54036936 54037137 -128378105 + MIR SINE MIR 45 250 -12 372 293 0 43 chr6 54037987 54038175 -128377067 + (CCA)n Simple_repeat Simple_repeat 1 180 0 29 28 0 0 chr6 54039313 54039349 -128375893 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr6 54039361 54039403 -128375839 + AT_rich Low_complexity Low_complexity 1 42 0 1111 276 36 29 chr6 54039588 54040009 -128375233 + L1PA12 LINE L1 1672 2095 -5486 1244 276 38 0 chr6 54040017 54040387 -128374855 + L1PA12 LINE L1 2147 2530 -5051 3150 225 8 9 chr6 54040413 54041152 -128374090 + L1PA12 LINE L1 2676 3413 -4171 5099 45 5 2 chr6 54041152 54042177 -128373065 + MER11A LTR ERVK 1 1266 0 12470 227 21 23 chr6 54042177 54045480 -128369762 + L1PA12 LINE L1 3409 6705 -879 2744 205 10 0 chr6 54045481 54045968 -128369274 - L1PA15-16 LINE L1 -6026 823 332 274 125 0 0 chr6 54045965 54046005 -128369237 - L1MEc LINE L1 -3440 3517 3478 * 299 247 111 53 chr6 54046014 54046204 -128369038 - L1MEc LINE L1 -4314 2824 2624 1550 284 60 19 chr6 54046417 54047937 -128367305 - L1MEc LINE L1 -4564 2395 635 813 206 22 28 chr6 54047996 54048176 -128367066 + MSTD LTR MaLR 218 396 0 949 227 42 25 chr6 54048535 54048779 -128366463 - L1MC3 LINE L1 -916 6919 6656 364 149 35 9 chr6 54050422 54050536 -128364706 + (TA)n Simple_repeat Simple_repeat 1 117 0 388 304 54 20 chr6 54052025 54052173 -128363069 + MIR SINE MIR 91 243 -19 331 165 0 21 chr6 54052314 54052389 -128362853 + MLT1A1 LTR MaLR 1 59 -306 1236 191 4 40 chr6 54052425 54052698 -128362544 + MLT1A1 LTR MaLR 62 324 -41 338 189 142 28 chr6 54052745 54052851 -128362391 + MIR SINE MIR 95 212 -50 1928 188 32 36 chr6 54054989 54055541 -128359701 - MLT2A2 LTR ERVL 0 554 1 2045 230 35 23 chr6 54056456 54056973 -128358269 + L1MD1 LINE L1 18 540 -6000 1444 214 86 0 chr6 54057019 54057323 -128357919 + Ricksha DNA DNA 1 330 -1716 * 1495 154 42 0 chr6 54057321 54057580 -128357662 + Ricksha DNA DNA 231 500 -2746 10952 147 31 45 chr6 54057584 54059669 -128355573 + Ricksha DNA DNA 1190 3245 -1 469 268 10 0 chr6 54059682 54059779 -128355463 + L1MD1 LINE L1 632 729 -5811 725 226 72 38 chr6 54059806 54060124 -128355118 + L1MD1 LINE L1 1195 1523 -5017 3665 193 35 16 chr6 54060124 54060919 -128354323 + L1MD1 LINE L1 5814 6623 -13 4672 220 106 8 chr6 54061246 54062571 -128352671 + Charlie1a DNA MER1_type 2 1455 0 846 263 78 55 chr6 54062856 54063471 -128351771 - L1MC5 LINE L1 -71 7890 7262 896 254 44 119 chr6 54063584 54064363 -128350879 - L1MC5 LINE L1 -733 7228 6480 2239 143 8 3 chr6 54064419 54064783 -128350459 - MER47A DNA MER2_type 0 366 1 356 103 17 0 chr6 54064783 54064841 -128350401 - L1 LINE L1 -1406 4740 4682 21 36 0 0 chr6 54066023 54066051 -128349191 + AT_rich Low_complexity Low_complexity 1 28 0 3097 192 71 1 chr6 54066641 54067314 -128347928 + Tigger6a DNA MER2_type 1 720 -363 1719 230 129 34 chr6 54067321 54067973 -128347269 - L1MC4 LINE L1 -126 7916 7203 219 125 0 0 chr6 54067995 54068035 -128347207 + (TTTTTG)n Simple_repeat Simple_repeat 6 45 0 3668 150 38 9 chr6 54068057 54068737 -128346505 + L1MC1 LINE L1 5634 6333 0 1820 320 89 26 chr6 54069145 54069985 -128345257 + L1M4b LINE L1 55 947 -5912 3876 180 24 38 chr6 54070376 54071392 -128343850 + L1MB8 LINE L1 5183 6176 -2 304 264 64 96 chr6 54071410 54071690 -128343552 - L1M4 LINE L1 -3241 2905 2635 181 264 0 57 chr6 54071693 54071746 -128343496 - MER5B DNA MER1_type -41 137 88 31 0 0 0 chr6 54072477 54072508 -128342734 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr6 54075078 54075106 -128340136 + AT_rich Low_complexity Low_complexity 1 28 0 968 193 88 60 chr6 54075115 54075467 -128339775 - LTR37A LTR ERV1 -14 412 51 27 0 0 0 chr6 54075614 54075641 -128339601 + AT_rich Low_complexity Low_complexity 1 27 0 564 222 23 51 chr6 54075642 54075818 -128339424 + MER76 LTR ERV 90 260 -428 519 296 35 12 chr6 54075824 54075993 -128339249 + MER76 LTR ERV 516 688 0 2165 114 0 3 chr6 54076279 54076586 -128338656 + AluSq SINE Alu 1 306 -7 237 310 0 14 chr6 54077205 54077276 -128337966 - MLT1I LTR MaLR -8 401 332 335 190 13 25 chr6 54077333 54077412 -128337830 + L1MC4a LINE L1 6338 6415 -1393 * 2617 208 26 130 chr6 54077409 54078090 -128337152 + L1MC3 LINE L1 6379 6960 -848 347 73 0 18 chr6 54078090 54078145 -128337097 + MADE1 DNA Mariner 1 54 -26 2617 208 26 130 chr6 54078145 54078530 -128336712 + L1MC3 LINE L1 6960 7383 -425 26 0 0 0 chr6 54078692 54078718 -128336524 + AT_rich Low_complexity Low_complexity 1 26 0 307 349 94 17 chr6 54078787 54079085 -128336157 - L1M4 LINE L1 -3136 3010 2690 241 218 46 81 chr6 54079315 54079402 -128335840 - MIR SINE MIR -13 249 166 2754 225 33 11 chr6 54081358 54081997 -128333245 + MER82 DNA MER2_type 1 653 0 225 154 0 0 chr6 54082405 54082444 -128332798 + CT-rich Low_complexity Low_complexity 3 41 0 2444 50 3 3 chr6 54084227 54084528 -128330714 + AluY SINE Alu 1 301 -10 407 362 101 41 chr6 54084538 54084925 -128330317 - L3 LINE CR1 -87 1490 1081 2296 71 0 3 chr6 54085823 54086120 -128329122 + AluY SINE Alu 1 296 -15 602 257 95 24 chr6 54087152 54087490 -128327752 - L1M4 LINE L1 -762 5384 5023 236 163 0 0 chr6 54087543 54087586 -128327656 - MLT1H LTR MaLR -2 547 505 300 27 0 0 chr6 54087599 54087636 -128327606 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 717 203 0 0 chr6 54087636 54087754 -128327488 - AluSq SINE Alu -62 251 134 298 122 43 26 chr6 54087841 54087956 -128327286 + (TA)n Simple_repeat Simple_repeat 2 118 0 264 60 0 140 chr6 54087979 54088029 -128327213 - MLT2A2 LTR ERVL -12 441 399 303 123 57 41 chr6 54088037 54088159 -128327083 + (TA)n Simple_repeat Simple_repeat 2 125 0 422 71 50 66 chr6 54088191 54088373 -128326869 + (TA)n Simple_repeat Simple_repeat 2 180 0 385 41 0 0 chr6 54088377 54088429 -128326813 + MLT2A2 LTR ERVL 346 453 0 311 320 52 87 chr6 54088468 54088699 -128326543 - MLT1H LTR MaLR -246 303 81 338 111 4 11 chr6 54088714 54088778 -128326464 - L1M4 LINE L1 -1200 4946 4885 326 154 0 0 chr6 54088994 54089046 -128326196 + MER67D LTR ERV1 1 52 -462 547 258 64 78 chr6 54089085 54089368 -128325874 - L1M4 LINE L1 -2797 3349 3071 747 184 7 0 chr6 54090456 54090592 -128324650 + MER67D LTR ERV1 1 137 -377 7242 99 10 20 chr6 54090592 54091659 -128323583 + MER11C LTR ERVK 1 1057 -14 1594 182 98 5 chr6 54091699 54092067 -128323175 + MER67D LTR ERV1 129 510 -4 591 244 86 95 chr6 54092932 54093155 -128322087 + MLT1H1 LTR MaLR 40 263 -327 324 257 76 35 chr6 54093341 54093485 -128321757 + MLT1H1 LTR MaLR 406 555 0 392 318 101 16 chr6 54093849 54093978 -128321264 + MIR SINE MIR 18 157 -105 1603 199 0 3 chr6 54095985 54096271 -128318971 - AluJo SINE Alu -23 289 5 233 330 20 20 chr6 54096598 54096698 -128318544 - MIR SINE MIR -108 154 55 32 43 0 0 chr6 54096759 54096805 -128318437 + AT_rich Low_complexity Low_complexity 1 46 0 3233 246 49 26 chr6 54096930 54098473 -128316769 - L1ME1 LINE L1 -5 6230 4652 737 287 197 15 chr6 54098474 54099067 -128316175 - L1ME1 LINE L1 -1662 4553 3853 541 162 37 30 chr6 54099072 54099212 -128316030 + MER51A LTR ERV1 1 140 -237 1768 122 65 10 chr6 54099276 54099570 -128315672 + MER51B LTR ERV1 68 377 0 320 219 44 26 chr6 54099573 54099687 -128315555 - L1 LINE L1 -2391 3824 3709 182 33 67 0 chr6 54103649 54103679 -128311563 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 901 287 88 46 chr6 54103837 54104932 -128310310 - L1ME1 LINE L1 -4898 1498 358 5764 108 26 6 chr6 54104935 54105307 -128309935 - L1PB1 LINE L1 -7 6144 5781 477 13 13 53 chr6 54105307 54105383 -128309859 + (TA)n Simple_repeat Simple_repeat 2 74 0 5764 108 26 6 chr6 54105383 54106263 -128308979 - L1PB1 LINE L1 -370 5781 4892 3326 128 28 2 chr6 54106264 54107070 -128308172 + L1PBa LINE L1 2410 3234 -3628 422 339 45 33 chr6 54107071 54107404 -128307838 - L1ME1 LINE L1 -6025 371 35 2687 187 10 41 chr6 54108758 54109362 -128305880 + LTR60 LTR ERV1 1 585 -1 482 244 18 77 chr6 54110088 54110309 -128304933 + L1MEc LINE L1 662 869 -5527 265 304 11 0 chr6 54110306 54110398 -128304844 - L1MEc LINE L1 -4617 1779 1687 * 2072 271 50 12 chr6 54110383 54111026 -128304216 - L1MEc LINE L1 -5696 700 34 709 147 0 0 chr6 54111092 54111208 -128304034 - AluSp/q SINE Alu -5 308 193 24 32 0 0 chr6 54111477 54111508 -128303734 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 54111572 54111605 -128303637 + AT_rich Low_complexity Low_complexity 1 33 0 2990 171 27 24 chr6 54111614 54112310 -128302932 - L1MA7 LINE L1 -31 6260 5457 863 185 6 0 chr6 54112310 54112463 -128302779 + L1PA8A LINE L1 5971 6128 -3 812 99 0 0 chr6 54112518 54112629 -128302613 - AluSg/x SINE Alu -8 302 192 569 177 125 43 chr6 54112629 54112741 -128302501 - L1MA7 LINE L1 -753 5393 5292 474 18 0 0 chr6 54112741 54112796 -128302446 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 569 177 125 43 chr6 54112796 54112905 -128302337 - L1MA7 LINE L1 -854 5292 5188 233 214 0 0 chr6 54112907 54112949 -128302293 + L1 LINE L1 4931 4972 -1174 699 101 0 10 chr6 54112950 54113049 -128302193 + MER4A LTR ERV1 1 98 -566 1816 123 158 75 chr6 54113049 54113422 -128301820 + MER4A LTR ERV1 261 664 0 1106 190 14 0 chr6 54113422 54113638 -128301604 + L1 LINE L1 4970 5188 -958 23 0 0 0 chr6 54113700 54113723 -128301519 + AT_rich Low_complexity Low_complexity 1 23 0 312 336 41 0 chr6 54114090 54114212 -128301030 + MIR SINE MIR 132 258 -4 23 54 0 0 chr6 54114213 54114250 -128300992 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 54114519 54114542 -128300700 + AT_rich Low_complexity Low_complexity 1 23 0 304 314 50 16 chr6 54115191 54115312 -128299930 - MIR3 SINE MIR -2 206 82 201 158 0 0 chr6 54115455 54115493 -128299749 + T-rich Low_complexity Low_complexity 3 40 0 25 0 0 0 chr6 54115547 54115572 -128299670 + AT_rich Low_complexity Low_complexity 1 25 0 3008 130 11 2 chr6 54115575 54116043 -128299199 - L1PA16 LINE L1 -9 6157 5686 1075 156 34 0 chr6 54116595 54116800 -128298442 - L1MA5A LINE L1 -3 6294 6083 264 30 0 0 chr6 54117337 54117370 -128297872 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 219 186 0 0 chr6 54117839 54117882 -128297360 + (TATG)n Simple_repeat Simple_repeat 2 44 0 232 174 0 0 chr6 54117884 54117930 -128297312 - LTR66 LTR ERVL -171 439 394 537 295 20 13 chr6 54118076 54118225 -128297017 + MER5B DNA MER1_type 20 169 -9 23 78 0 0 chr6 54118395 54118446 -128296796 + AT_rich Low_complexity Low_complexity 1 51 0 243 113 25 100 chr6 54118811 54118891 -128296351 + T-rich Low_complexity Low_complexity 3 76 0 3247 179 33 0 chr6 54120223 54120828 -128294414 - MST-int LTR MaLR -1026 625 1 374 333 38 9 chr6 54121113 54121326 -128293916 - MIR SINE MIR -38 224 6 195 367 28 28 chr6 54121408 54121517 -128293725 - L2 LINE L2 -40 3273 3165 264 328 114 48 chr6 54121726 54122016 -128293226 - L2 LINE L2 -348 2966 2658 297 365 9 0 chr6 54122547 54122654 -128292588 - MIR SINE MIR -68 140 33 6088 211 15 4 chr6 54123992 54125531 -128289711 + L1PA12 LINE L1 2665 4222 -3362 1791 166 80 11 chr6 54125973 54126346 -128288896 - L1MB2 LINE L1 0 6171 5773 623 146 0 0 chr6 54126416 54126512 -128288730 - L1MB2 LINE L1 -388 5783 5688 1840 142 39 0 chr6 54126936 54127247 -128287995 - L1MA2 LINE L1 -82 6222 5900 1277 194 14 47 chr6 54127247 54127526 -128287716 + AluJb SINE Alu 37 306 -6 36 0 0 0 chr6 54128212 54128248 -128286994 + AT_rich Low_complexity Low_complexity 1 36 0 12896 168 10 1 chr6 54128416 54130499 -128284743 + L1P4 LINE L1 1 2102 -5479 12124 173 10 28 chr6 54130600 54133177 -128282065 + L1P4 LINE L1 4397 6927 -672 285 121 0 0 chr6 54133183 54133238 -128282004 + L1PA14 LINE L1 6109 6163 -2 348 270 20 20 chr6 54133541 54133641 -128281601 + MER5B DNA MER1_type 1 100 -78 2001 114 3 24 chr6 54133708 54134006 -128281236 - AluSx SINE Alu -20 292 1 396 0 0 0 chr6 54134133 54134177 -128281065 + (TG)n Simple_repeat Simple_repeat 1 44 0 35 0 0 0 chr6 54134377 54134412 -128280830 + AT_rich Low_complexity Low_complexity 1 35 0 321 167 56 14 chr6 54134431 54134503 -128280739 + MER116 DNA Mariner 1 75 -5 213 173 27 27 chr6 54134754 54134829 -128280413 + GA-rich Low_complexity Low_complexity 2 76 0 21 95 0 0 chr6 54135029 54135092 -128280150 + AT_rich Low_complexity Low_complexity 1 63 0 2731 106 0 5 chr6 54135608 54135985 -128279257 + THE1C LTR MaLR 1 375 0 2220 103 10 6 chr6 54136882 54137194 -128278048 - AluSp SINE Alu 0 313 1 197 330 107 19 chr6 54137201 54137304 -128277938 - L2 LINE L2 0 3272 3161 232 234 0 0 chr6 54137803 54137850 -128277392 + L2 LINE L2 3261 3307 -6 23 78 0 0 chr6 54138058 54138109 -128277133 + AT_rich Low_complexity Low_complexity 1 51 0 275 338 56 60 chr6 54139542 54139776 -128275466 + L2 LINE L2 3081 3313 0 258 304 200 8 chr6 54140447 54140572 -128274670 + MER5A DNA MER1_type 38 186 -3 703 131 41 21 chr6 54142054 54142199 -128273043 - L1MA8 LINE L1 -3 6288 6141 1216 146 32 20 chr6 54142199 54142445 -128272797 + L1MA8 LINE L1 5908 6156 -135 630 280 6 6 chr6 54143810 54143985 -128271257 - MER5B DNA MER1_type -3 175 1 2472 130 14 3 chr6 54145217 54145587 -128269655 - THE1C LTR MaLR 0 375 2 1613 226 30 0 chr6 54145837 54146174 -128269068 + MLT1D LTR MaLR 3 349 -156 280 321 0 0 chr6 54146200 54146284 -128268958 - MIR SINE MIR -17 245 162 303 290 37 47 chr6 54146386 54146493 -128268749 + MER115 DNA AcHobo 119 224 -469 829 273 46 21 chr6 54146543 54146781 -128268461 - MLT1J LTR MaLR -93 418 175 192 125 0 0 chr6 54146929 54146961 -128268281 + (TG)n Simple_repeat Simple_repeat 2 33 0 2097 137 0 3 chr6 54147622 54147928 -128267314 - AluSg SINE Alu -5 305 1 758 287 85 64 chr6 54147928 54148398 -128266844 - L1MEd LINE L1 -4959 1160 681 799 291 18 4 chr6 54149164 54149391 -128265851 + MIR SINE MIR 32 261 -1 22 35 0 0 chr6 54150893 54150922 -128264320 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 54151567 54151589 -128263653 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 54152029 54152057 -128263185 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr6 54152170 54152199 -128263043 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 2009 133 3 0 chr6 54152201 54152487 -128262755 - AluSx SINE Alu -21 291 5 263 286 12 0 chr6 54152558 54152642 -128262600 - L1MC4 LINE L1 -145 7897 7813 1219 267 93 0 chr6 54152644 54153041 -128262201 - L1MC4 LINE L1 -288 7754 7321 222 386 21 29 chr6 54153074 54153214 -128262028 - MIR3 SINE MIR -58 150 12 181 336 125 19 chr6 54154145 54154249 -128260993 - L2 LINE L2 -257 3056 2942 291 253 58 0 chr6 54154315 54154402 -128260840 - MER45A DNA AcHobo 0 178 87 1302 189 14 43 chr6 54154402 54154683 -128260559 + AluJb SINE Alu 18 290 -22 1743 66 0 0 chr6 54154690 54154956 -128260286 + AluY SINE Alu 73 338 0 469 234 63 0 chr6 54154970 54155081 -128260161 - MER45A DNA AcHobo -60 118 1 261 0 0 0 chr6 54155378 54155407 -128259835 + (CA)n Simple_repeat Simple_repeat 2 30 0 1216 187 27 5 chr6 54155908 54156127 -128259115 - MLT1A1 LTR MaLR 0 365 142 2905 124 178 45 chr6 54156144 54156739 -128258503 - MER4D LTR ERV1 -21 882 209 647 165 9 9 chr6 54156734 54156849 -128258393 - MLT1A1 LTR MaLR -250 115 1 * 209 193 0 157 chr6 54156906 54156989 -128258253 + MER5B DNA MER1_type 60 129 -49 417 271 7 43 chr6 54157114 54157254 -128257988 - L2 LINE L2 -14 3299 3165 1300 113 5 5 chr6 54157748 54157951 -128257291 + L1PB1 LINE L1 5944 6146 -5 13001 113 8 6 chr6 54158029 54160830 -128254412 - L1PA8 LINE L1 0 6172 3384 1990 138 0 35 chr6 54160830 54161148 -128254094 - AluSx SINE Alu -5 307 1 14671 149 22 107 chr6 54161148 54162118 -128253124 - L1PA8 LINE L1 -2843 3303 2253 186 43 0 0 chr6 54162118 54162141 -128253101 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 14671 149 22 107 chr6 54162141 54164374 -128250868 - L1PA8 LINE L1 -3893 2253 433 468 0 0 0 chr6 54164374 54164426 -128250816 + (CA)n Simple_repeat Simple_repeat 2 53 0 14671 149 22 107 chr6 54164426 54164816 -128250426 - L1PA8 LINE L1 -5713 433 12 393 268 18 9 chr6 54166150 54166262 -128248980 - MER81 DNA DNA 0 114 2 308 111 0 0 chr6 54166432 54166477 -128248765 - MER58 DNA MER1_type -2 2418 2374 441 139 76 0 chr6 54166915 54166994 -128248248 - LTR40a LTR ERVL -373 146 62 21 0 0 0 chr6 54168334 54168355 -128246887 + AT_rich Low_complexity Low_complexity 1 21 0 296 290 50 10 chr6 54168358 54168458 -128246784 - L2 LINE L2 -18 3295 3192 182 339 31 15 chr6 54168496 54168561 -128246681 - MIR SINE MIR -177 85 20 1207 259 140 21 chr6 54169107 54169629 -128245613 + MLT1E2 LTR MaLR 1 551 -42 24 0 0 0 chr6 54170243 54170267 -128244975 + AT_rich Low_complexity Low_complexity 1 24 0 457 301 57 84 chr6 54170620 54170916 -128244326 - MLT1J LTR MaLR -11 500 213 2146 115 26 7 chr6 54170970 54171274 -128243968 + AluSg SINE Alu 1 310 0 459 355 58 40 chr6 54171678 54172025 -128243217 + MLT1K LTR MaLR 74 426 -162 241 280 40 0 chr6 54173399 54173474 -128241768 - L1MEd LINE L1 -5451 668 591 810 293 62 66 chr6 54173508 54173993 -128241249 - L1MEd LINE L1 -5616 503 21 215 275 99 62 chr6 54174142 54174353 -128240889 + L2 LINE L2 467 685 -2629 310 115 0 0 chr6 54174466 54174518 -128240724 - L1PB4 LINE L1 -2 6154 6103 20519 185 41 24 chr6 54175117 54182530 -128232712 - L1MA1 LINE L1 -7 7714 16 1566 198 52 54 chr6 54182976 54183420 -128231822 - LTR47B LTR ERVL 0 443 1 296 289 54 42 chr6 54183542 54183708 -128231534 + L2 LINE L2 3141 3308 -5 27 49 0 0 chr6 54184594 54184635 -128230607 + AT_rich Low_complexity Low_complexity 1 41 0 2191 123 3 0 chr6 54184700 54184993 -128230249 - AluSx SINE Alu -18 294 1 222 297 78 55 chr6 54185210 54185338 -128229904 - L2 LINE L2 -25 3247 3117 1804 261 105 2 chr6 54186347 54186825 -128228417 - MLT1E LTR MaLR -32 561 35 3404 34 0 2 chr6 54186947 54187361 -128227881 - L1PA4 LINE L1 -3 6152 5740 2132 56 23 0 chr6 54187361 54187664 -128227578 + L1P LINE L1 3136 3445 -2701 2196 81 7 17 chr6 54187664 54187959 -128227283 - AluY SINE Alu -5 306 15 388 313 15 70 chr6 54187959 54188160 -128227082 - MIR SINE MIR -33 229 40 1164 291 52 35 chr6 54188187 54188703 -128226539 - L1ME3A LINE L1 -4 6166 5642 264 252 89 22 chr6 54188803 54188938 -128226304 - L1ME3A LINE L1 -2276 5509 5366 225 267 89 37 chr6 54189041 54189232 -128226010 - L1ME3A LINE L1 -935 5211 5011 370 303 35 0 chr6 54189413 54189555 -128225687 + L1MEc LINE L1 1300 1446 -4950 303 353 115 8 chr6 54189563 54189807 -128225435 - L1MEd LINE L1 -4955 1164 895 295 297 33 0 chr6 54190635 54190726 -128224516 - MIR SINE MIR -73 189 96 878 210 6 0 chr6 54191008 54191170 -128224072 - FRAM SINE Alu -3 163 1 260 301 60 38 chr6 54191659 54191792 -128223450 - MIR SINE MIR -71 191 56 1173 299 109 19 chr6 54192146 54192882 -128222360 - L2 LINE L2 0 3313 2510 278 198 163 12 chr6 54193917 54194003 -128221239 + MIR SINE MIR 97 195 -67 1553 242 38 64 chr6 54194181 54194715 -128220527 + MLT2B1 LTR ERVL 1 520 0 1632 186 3 7 chr6 54194828 54195123 -128220119 + AluJo SINE Alu 1 294 -18 2898 129 59 8 chr6 54196033 54196505 -128218737 + LOR1a LTR ERV1 2 497 0 23 54 0 0 chr6 54197106 54197143 -128218099 + AT_rich Low_complexity Low_complexity 1 37 0 2402 122 22 5 chr6 54197989 54198358 -128216884 - THE1C LTR MaLR 0 375 1 2089 221 33 2 chr6 54198605 54199093 -128216149 + MLT1D LTR MaLR 3 505 0 287 245 82 20 chr6 54199606 54199704 -128215538 - L2 LINE L2 0 3272 3169 851 90 52 0 chr6 54200278 54200412 -128214830 - L1MB2 LINE L1 -2 6169 6029 333 0 0 0 chr6 54200703 54200740 -128214502 + (TG)n Simple_repeat Simple_repeat 2 38 0 510 267 23 23 chr6 54201021 54201197 -128214045 + MER5B DNA MER1_type 1 176 -2 1212 195 17 67 chr6 54201649 54201947 -128213295 + MLT1A1 LTR MaLR 83 365 0 718 254 80 45 chr6 54201947 54202218 -128213024 + MLT2C2 LTR ERVL 144 429 -35 213 39 0 0 chr6 54202218 54202244 -128212998 + (CA)n Simple_repeat Simple_repeat 2 27 0 718 254 80 45 chr6 54202244 54202282 -128212960 + MLT2C2 LTR ERVL 429 464 0 342 0 0 0 chr6 54203514 54203552 -128211690 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2332 55 0 10 chr6 54203554 54203845 -128211397 - AluY SINE Alu -23 288 1 196 310 42 0 chr6 54204311 54204382 -128210860 + L2 LINE L2 1492 1565 -1749 188 273 0 0 chr6 54204372 54204416 -128210826 + L2 LINE L2 3229 3272 0 * 321 372 110 28 chr6 54204475 54205004 -128210238 + L2 LINE L2 1608 2179 -1135 189 0 0 0 chr6 54205065 54205086 -128210156 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 462 49 0 0 chr6 54205101 54205162 -128210080 - L1PB3 LINE L1 -2 6152 6092 721 232 18 24 chr6 54205180 54205348 -128209894 - MER20 DNA MER1_type -52 167 1 355 365 181 21 chr6 54205424 54206055 -128209187 + L2 LINE L2 2211 2942 -372 1539 251 40 34 chr6 54206121 54206623 -128208619 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chr6 54208263 54208284 -128206958 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 54208325 54208356 -128206886 + AT_rich Low_complexity Low_complexity 1 31 0 241 206 151 0 chr6 54209538 54209611 -128205631 + L1MD3 LINE L1 7912 7995 0 1846 56 0 0 chr6 54209823 54210057 -128205185 - L1PA4 LINE L1 -127 6028 5795 246 27 27 0 chr6 54210043 54210080 -128205162 + L1PA2 LINE L1 6112 6149 -6 * 26 0 0 0 chr6 54210157 54210183 -128205059 + AT_rich Low_complexity Low_complexity 1 26 0 364 319 102 28 chr6 54210908 54211043 -128204199 - MIR SINE MIR -12 250 92 1994 119 7 3 chr6 54211043 54211328 -128203914 + AluSp SINE Alu 1 286 -27 364 319 102 28 chr6 54211328 54211408 -128203834 - MIR SINE MIR -170 92 19 1445 204 3 39 chr6 54211557 54211865 -128203377 + AluJb SINE Alu 1 297 -15 405 167 0 0 chr6 54211962 54212028 -128203214 + LTR41 LTR ERVL 105 170 -603 270 359 52 49 chr6 54212401 54212749 -128202493 - L2 LINE L2 -1021 2293 1945 569 303 284 18 chr6 54212785 54213196 -128202046 - L2 LINE L2 -1555 1759 1458 306 0 0 0 chr6 54213196 54213230 -128202012 + (TG)n Simple_repeat Simple_repeat 1 34 0 569 303 284 18 chr6 54213230 54213640 -128201602 - L2 LINE L2 -1856 1458 720 2203 161 88 2 chr6 54215412 54215810 -128199432 - MSTB1 LTR MaLR 0 432 1 602 379 50 19 chr6 54215855 54216319 -128198923 + L2 LINE L2 2380 2857 -457 228 172 0 0 chr6 54216511 54216569 -128198673 + (TA)n Simple_repeat Simple_repeat 2 59 0 23 33 0 0 chr6 54217340 54217370 -128197872 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr6 54217999 54218032 -128197210 + AT_rich Low_complexity Low_complexity 1 33 0 262 309 101 0 chr6 54218062 54218201 -128197041 + MIR SINE MIR 110 262 0 491 324 78 57 chr6 54218420 54218806 -128196436 + MLT1K LTR MaLR 84 477 -111 291 161 36 0 chr6 54218810 54218866 -128196376 + MLT1A1 LTR MaLR 3 60 -314 1757 185 47 6 chr6 54218867 54219208 -128196034 + MLT1A1 LTR MaLR 11 365 0 437 237 101 21 chr6 54220044 54220359 -128194883 - L1ME3A LINE L1 -9 6161 5873 899 211 48 22 chr6 54220359 54220586 -128194656 + MER46A DNA MER2_type 2 234 -2 437 237 101 21 chr6 54220586 54220945 -128194297 - L1ME3A LINE L1 -297 5873 5327 285 104 26 143 chr6 54221202 54221279 -128193963 + MADE1 DNA Mariner 13 80 0 540 333 10 0 chr6 54221469 54221661 -128193581 - MIR SINE MIR -16 246 53 2321 62 0 26 chr6 54221701 54222045 -128193197 + AluY SINE Alu 6 311 0 346 310 21 0 chr6 54222158 54222303 -128192939 + L2 LINE L2 1902 2049 -1265 432 0 0 0 chr6 54224205 54224253 -128190989 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 56 0 0 chr6 54224310 54224346 -128190896 + AT_rich Low_complexity Low_complexity 1 36 0 789 241 99 32 chr6 54225332 54225574 -128189668 - MER114 LTR ERV 0 648 371 2403 76 0 0 chr6 54225574 54225877 -128189365 - AluY SINE Alu -8 303 1 789 241 99 32 chr6 54225877 54226007 -128189235 - MER114 LTR ERV -277 371 251 4103 181 35 34 chr6 54226201 54227132 -128188110 - L1MA10 LINE L1 -29 6305 5374 4516 25 0 0 chr6 54228315 54228881 -128186361 + L1PA4 LINE L1 5612 6177 0 225 333 0 0 chr6 54228931 54228988 -128186254 - MIR SINE MIR -119 89 33 198 167 0 0 chr6 54230409 54230445 -128184797 + (CATA)n Simple_repeat Simple_repeat 3 38 0 276 383 55 8 chr6 54231216 54231344 -128183898 - L2 LINE L2 0 3272 3139 2221 108 7 7 chr6 54232359 54232664 -128182578 - AluSx SINE Alu -7 305 1 2585 42 0 10 chr6 54233878 54234190 -128181052 + AluY SINE Alu 1 309 -2 204 97 0 0 chr6 54234278 54234309 -128180933 + (CA)n Simple_repeat Simple_repeat 1 31 0 2046 123 0 47 chr6 54235700 54236018 -128179224 - AluSx SINE Alu -9 303 1 226 210 16 16 chr6 54236060 54236122 -128179120 + MER117 DNA MER1_type 30 91 -106 2097 133 16 3 chr6 54236226 54236535 -128178707 - AluSq SINE Alu 0 313 1 216 0 0 0 chr6 54236535 54236559 -128178683 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1544 145 7 73 chr6 54236567 54236856 -128178386 - AluSx SINE Alu -38 274 5 3199 21 0 8 chr6 54238003 54238384 -128176858 + L1PA4 LINE L1 5776 6153 -2 819 119 0 0 chr6 54238985 54239111 -128176131 + (TA)n Simple_repeat Simple_repeat 1 126 0 189 0 0 0 chr6 54239110 54239131 -128176111 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 24 32 0 0 chr6 54240149 54240180 -128175062 + AT_rich Low_complexity Low_complexity 1 31 0 1470 104 26 26 chr6 54240251 54240481 -128174761 + MER30 DNA MER1_type 1 230 0 4206 147 14 26 chr6 54240607 54241333 -128173909 + LTR62 LTR ERVK 1 717 -2 180 363 75 0 chr6 54241877 54241957 -128173285 + MIR SINE MIR 58 143 -65 29 47 0 0 chr6 54242094 54242137 -128173105 + AT_rich Low_complexity Low_complexity 1 43 0 1157 258 74 30 chr6 54242983 54243483 -128171759 - L1ME3A LINE L1 0 6170 5649 309 236 28 0 chr6 54243487 54243559 -128171683 - MER116 DNA Mariner -6 74 1 591 302 74 23 chr6 54243575 54243908 -128171334 - L1ME3A LINE L1 -543 5627 5313 252 100 0 0 chr6 54243908 54243948 -128171294 + (TG)n Simple_repeat Simple_repeat 2 41 0 591 302 74 23 chr6 54243948 54244361 -128170881 - L1ME3A LINE L1 -857 5313 4841 434 318 83 12 chr6 54244372 54244624 -128170618 - MARNA DNA Mariner -177 409 140 1365 79 0 11 chr6 54244626 54244815 -128170427 + L1PA8 LINE L1 5982 6168 -4 275 252 17 35 chr6 54246165 54246280 -128168962 + L1M4 LINE L1 5155 5267 -879 4174 195 80 110 chr6 54246739 54246928 -128168314 - L1MC3 LINE L1 -9 7776 7583 1727 178 72 41 chr6 54246928 54247344 -128167898 - MSTB1 LTR MaLR -3 429 1 4174 195 80 110 chr6 54247344 54247730 -128167512 - L1MC3 LINE L1 -202 7583 7187 277 304 0 0 chr6 54247730 54247809 -128167433 - MLT1F1 LTR MaLR -444 123 45 4174 195 80 110 chr6 54247809 54248671 -128166571 - L1MC3 LINE L1 -598 7187 6305 858 194 5 0 chr6 54248687 54248873 -128166369 - L1MA5 LINE L1 0 6300 6114 293 182 0 0 chr6 54248874 54248929 -128166313 - MER41B LTR ERV1 -580 55 1 567 300 130 15 chr6 54248943 54249143 -128166099 + L1PA10 LINE L1 1036 1258 -5529 19518 187 19 19 chr6 54249147 54251550 -128163692 + L1PA10 LINE L1 1397 3798 -3014 342 0 0 0 chr6 54251550 54251588 -128163654 + (CA)n Simple_repeat Simple_repeat 2 39 0 19518 187 19 19 chr6 54251588 54253935 -128161307 + L1PA10 LINE L1 3798 6159 -653 1668 114 84 0 chr6 54253935 54254197 -128161045 + L1PA10 LINE L1 6532 6815 -4 19518 187 19 19 chr6 54254197 54254245 -128160997 + L1PA10 LINE L1 6159 6205 -607 25 65 0 0 chr6 54254278 54254324 -128160918 + AT_rich Low_complexity Low_complexity 1 46 0 46 45 0 0 chr6 54254685 54254752 -128160490 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr6 54254842 54254864 -128160378 + AT_rich Low_complexity Low_complexity 1 22 0 206 288 81 56 chr6 54256121 54256319 -128158923 + L2 LINE L2 1750 1952 -1362 42642 36 23 1 chr6 54256339 54262356 -128152886 + L1PA3 LINE L1 1 6152 -3 1452 177 99 30 chr6 54262367 54262701 -128152541 - L1MA7 LINE L1 -152 6139 5783 381 197 28 0 chr6 54262703 54262774 -128152468 - Tigger5 DNA MER2_type -1 2322 2250 345 263 0 0 chr6 54262850 54262926 -128152316 - Tigger5 DNA MER2_type -2244 79 4 2371 172 9 0 chr6 54262928 54263347 -128151895 - L1MA7 LINE L1 -507 5784 5362 316 261 48 0 chr6 54263347 54263430 -128151812 + MIR3 SINE MIR 74 160 -48 203 171 0 0 chr6 54263435 54263476 -128151766 + T-rich Low_complexity Low_complexity 1 41 0 456 309 72 7 chr6 54263486 54263638 -128151604 - MER5B DNA MER1_type -16 162 1 10656 49 6 46 chr6 54263906 54265339 -128149903 - SVA Other Other -1 1385 10 24 0 0 0 chr6 54265599 54265623 -128149619 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr6 54265682 54265718 -128149524 + AT_rich Low_complexity Low_complexity 1 36 0 2037 178 89 0 chr6 54265885 54266300 -128148942 - LTR47A LTR ERVL 0 452 1 1997 121 11 0 chr6 54266945 54267225 -128148017 + AluSx SINE Alu 1 283 -29 378 42 0 0 chr6 54267226 54267274 -128147968 + (CA)n Simple_repeat Simple_repeat 1 48 0 743 304 110 16 chr6 54268234 54268879 -128146363 + L1M4 LINE L1 4496 5201 -945 1330 151 38 0 chr6 54269380 54269592 -128145650 + AluJb SINE Alu 64 283 -29 1145 129 104 71 chr6 54269602 54269842 -128145400 - AluSx SINE Alu -64 248 1 24 53 0 0 chr6 54269925 54269963 -128145279 + AT_rich Low_complexity Low_complexity 1 38 0 293 145 16 0 chr6 54270560 54270622 -128144620 + GA-rich Low_complexity Low_complexity 1 63 0 1335 113 0 5 chr6 54270893 54271105 -128144137 - L1MA3 LINE L1 0 6305 6095 365 340 6 13 chr6 54271217 54271376 -128143866 + CT-rich Low_complexity Low_complexity 6 163 0 3282 252 59 56 chr6 54272653 54272723 -128142519 + L1MCa LINE L1 81 149 -6415 183 42 0 0 chr6 54272723 54272747 -128142495 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3282 252 59 56 chr6 54272747 54274104 -128141138 + L1MCa LINE L1 149 1501 -5063 951 32 0 24 chr6 54274104 54274230 -128141012 + L1PA4 LINE L1 6030 6152 -3 3282 252 59 56 chr6 54274230 54275483 -128139759 + L1MCa LINE L1 1501 2853 -3711 183 42 0 0 chr6 54275494 54275518 -128139724 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2248 123 15 0 chr6 54275520 54275861 -128139381 - L1PB3 LINE L1 -7 6147 5802 225 163 0 0 chr6 54275880 54275923 -128139319 + L1M4 LINE L1 4804 4846 -1300 7192 209 41 17 chr6 54275937 54277733 -128137509 - L1 LINE L1 -1279 4867 3029 2014 108 13 29 chr6 54277738 54278054 -128137188 - L1PB2 LINE L1 -1 6150 5840 6392 211 42 50 chr6 54278061 54279320 -128135922 - L1PBb LINE L1 -2191 4012 2744 246 185 37 0 chr6 54279320 54279374 -128135868 + MADE1 DNA Mariner 25 80 0 6392 211 42 50 chr6 54279374 54282182 -128133060 - L1PBb LINE L1 -3459 2744 1 * 6789 217 53 9 chr6 54282158 54283715 -128131527 - L1PBa LINE L1 -5235 1628 3 1711 267 27 69 chr6 54283737 54285095 -128130147 - L1 LINE L1 -3113 3033 1768 236 286 10 0 chr6 54285108 54285206 -128130036 + L1MC1 LINE L1 2425 2523 -3623 3609 252 63 18 chr6 54285212 54287036 -128128206 + L1MC1 LINE L1 3077 5008 -1138 341 214 22 34 chr6 54287031 54287120 -128128122 + L1MC1 LINE L1 5965 6052 -281 * 594 238 154 0 chr6 54287133 54287276 -128127966 - LTR42 LTR ERVL -12 483 319 278 197 16 0 chr6 54287277 54287338 -128127904 + L1MD3 LINE L1 6298 6359 -1636 * 1187 181 4 13 chr6 54287329 54287566 -128127676 + L1MA4 LINE L1 5892 6126 -174 6209 179 22 34 chr6 54287581 54289761 -128125481 - L1PA13 LINE L1 -9 6154 3989 627 266 94 15 chr6 54290341 54290544 -128124698 + MIR SINE MIR 37 255 -7 206 233 0 0 chr6 54290547 54290590 -128124652 + (CTA)n Simple_repeat Simple_repeat 1 43 0 207 0 0 0 chr6 54290807 54290830 -128124412 + (TTTAA)n Simple_repeat Simple_repeat 5 27 0 2030 304 127 23 chr6 54292572 54293871 -128121371 + L2 LINE L2 1891 3313 0 2032 150 114 10 chr6 54295197 54295583 -128119659 - MSTA LTR MaLR 0 428 3 522 70 0 0 chr6 54296158 54296229 -128119013 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 358 93 0 0 chr6 54297003 54297057 -128118185 - MADE1 DNA Mariner 0 80 27 1311 254 141 20 chr6 54297815 54298747 -128116495 - L1ME2 LINE L1 -13 6220 5175 * 1768 255 97 42 chr6 54298744 54299943 -128115299 - L1ME2 LINE L1 -1280 4935 3529 2221 106 0 0 chr6 54299943 54300245 -128114997 + AluY SINE Alu 1 302 -9 1768 255 97 42 chr6 54300245 54300749 -128114493 - L1ME2 LINE L1 -2686 3529 3054 * 1975 283 87 33 chr6 54300737 54301744 -128113498 - L1ME2 LINE L1 -5300 1096 35 27 0 0 0 chr6 54301874 54301901 -128113341 + AT_rich Low_complexity Low_complexity 1 27 0 201 39 0 0 chr6 54302072 54302098 -128113144 + (TC)n Simple_repeat Simple_repeat 2 27 0 240 35 0 0 chr6 54302119 54302148 -128113094 + (TG)n Simple_repeat Simple_repeat 2 30 0 29 0 0 0 chr6 54302226 54302255 -128112987 + AT_rich Low_complexity Low_complexity 1 29 0 273 272 87 0 chr6 54302420 54302512 -128112730 - MLT1H LTR MaLR -11 538 439 186 414 19 0 chr6 54302842 54302946 -128112296 + L2 LINE L2 2705 2810 -504 1728 151 60 0 chr6 54303049 54303334 -128111908 + AluJb SINE Alu 6 307 -5 36 0 0 0 chr6 54303650 54303686 -128111556 + AT_rich Low_complexity Low_complexity 1 36 0 283 367 101 6 chr6 54303702 54303860 -128111382 - MIR SINE MIR -18 244 72 653 223 6 8 chr6 54304001 54304175 -128111067 - MLT1E1 LTR MaLR 0 654 444 352 311 10 82 chr6 54304204 54304243 -128110999 + L1MC4a LINE L1 5696 5736 -2072 2151 123 3 0 chr6 54304243 54304544 -128110698 + AluSp SINE Alu 1 302 -11 352 311 10 82 chr6 54304544 54304710 -128110532 + L1MC4a LINE L1 5736 5886 -1922 2360 11 104 0 chr6 54304919 54305198 -128110044 + AluYb8 SINE Alu 1 308 -10 1734 181 3 3 chr6 54306285 54306583 -128108659 + AluJb SINE Alu 1 298 -14 540 0 0 0 chr6 54306587 54306647 -128108595 + (TA)n Simple_repeat Simple_repeat 1 60 0 1795 270 57 3 chr6 54307077 54307601 -128107641 + MLT1H1 LTR MaLR 1 595 0 243 146 0 0 chr6 54308306 54308347 -128106895 + (TC)n Simple_repeat Simple_repeat 1 41 0 281 311 23 23 chr6 54308351 54308483 -128106759 + LTR16C LTR ERVL 360 491 0 25 31 0 0 chr6 54308917 54308949 -128106293 + AT_rich Low_complexity Low_complexity 1 32 0 957 92 4 228 chr6 54309543 54309824 -128105418 - L1MA8 LINE L1 -634 5657 5440 * 2578 153 0 20 chr6 54309817 54310261 -128104981 + L1MA8 LINE L1 5680 6114 -177 767 185 39 0 chr6 54310325 54310503 -128104739 + L1MA8 LINE L1 6101 6285 -6 1177 268 83 48 chr6 54311695 54312094 -128103148 - MLT1E LTR MaLR 0 593 181 339 65 0 0 chr6 54312140 54312186 -128103056 + (CA)n Simple_repeat Simple_repeat 1 46 0 623 311 72 0 chr6 54312457 54312666 -128102576 - MIR SINE MIR -21 241 18 199 347 129 24 chr6 54312726 54312850 -128102392 + MIR3 SINE MIR 66 202 -6 196 283 179 9 chr6 54313145 54313251 -128101991 + MIR SINE MIR 29 152 -110 360 252 0 0 chr6 54313865 54313988 -128101254 + (CA)n Simple_repeat Simple_repeat 1 123 0 296 313 45 0 chr6 54314267 54314379 -128100863 - MER20B DNA MER1_type -602 181 65 1951 121 0 0 chr6 54314772 54315037 -128100205 - AluSg SINE Alu -45 265 1 1587 168 14 0 chr6 54315381 54315666 -128099576 - L1MC1 LINE L1 -6 6327 6039 3841 105 38 68 chr6 54315666 54316352 -128098890 - MER52C LTR ERV1 0 1278 614 2199 190 69 13 chr6 54316352 54316401 -128098841 - L1MC1 LINE L1 -394 5939 5894 2106 107 0 17 chr6 54316401 54316719 -128098523 + AluSx SINE Alu 1 313 0 2199 190 69 13 chr6 54316719 54317132 -128098110 - L1MC1 LINE L1 -439 5894 5450 332 373 93 42 chr6 54317603 54318152 -128097090 + L2 LINE L2 2282 2858 -456 1559 274 18 10 chr6 54318215 54318602 -128096640 - MSTD LTR MaLR 0 396 7 182 37 37 0 chr6 54318999 54319026 -128096216 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 207 0 0 0 chr6 54319275 54319298 -128095944 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 182 343 15 15 chr6 54319498 54319565 -128095677 + MIR SINE MIR 49 115 -147 347 250 116 0 chr6 54319600 54319712 -128095530 + L2 LINE L2 3186 3310 -3 213 39 0 0 chr6 54321901 54321927 -128093315 + (CA)n Simple_repeat Simple_repeat 2 27 0 303 28 0 0 chr6 54321956 54321992 -128093250 + (CA)n Simple_repeat Simple_repeat 2 37 0 387 0 0 0 chr6 54323875 54323918 -128091324 + (CA)n Simple_repeat Simple_repeat 2 44 0 626 295 160 25 chr6 54324191 54324683 -128090559 + MLT1G LTR MaLR 28 590 0 1936 181 3 19 chr6 54324801 54325172 -128090070 + MLT1A1 LTR MaLR 1 365 0 274 316 26 17 chr6 54325321 54325438 -128089804 + MLT1-int LTR MaLR 397 514 -857 2039 127 56 31 chr6 54326221 54326576 -128088666 - THE1B LTR MaLR 0 364 1 359 324 149 32 chr6 54326920 54327263 -128087979 + HAL1 LINE L1 1171 1553 -954 610 100 22 0 chr6 54327822 54327912 -128087330 + AluSg/x SINE Alu 204 295 -14 23 33 0 0 chr6 54328147 54328177 -128087065 + AT_rich Low_complexity Low_complexity 1 30 0 27 73 0 0 chr6 54328195 54328250 -128086992 + AT_rich Low_complexity Low_complexity 1 55 0 206 32 32 0 chr6 54328253 54328284 -128086958 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1927 108 0 28 chr6 54328287 54328575 -128086667 - AluSg SINE Alu -30 280 1 247 355 91 0 chr6 54329282 54329392 -128085850 - MIR SINE MIR -111 151 32 6448 83 15 15 chr6 54329685 54331037 -128084205 - L1PA10 LINE L1 -4 6164 4810 4443 195 7 84 chr6 54331749 54332787 -128082455 + MSTB-int LTR MaLR 694 1651 0 2127 193 39 0 chr6 54332787 54333197 -128082045 + MSTB LTR MaLR 1 426 0 3490 187 43 2 chr6 54333252 54333874 -128081368 - L1MA6 LINE L1 -359 5941 5346 243 0 0 0 chr6 54333874 54333901 -128081341 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3490 187 43 2 chr6 54333901 54334612 -128080630 - L1MA6 LINE L1 -954 5346 4564 1994 205 51 3 chr6 54334612 54334983 -128080259 - MSTB LTR MaLR -37 389 1 8486 207 32 25 chr6 54334983 54337111 -128078131 - L1MA6 LINE L1 -1581 4565 2423 238 222 111 17 chr6 54338181 54338298 -128076944 - L1ME4a LINE L1 -42 6079 5952 287 370 100 17 chr6 54339498 54339798 -128075444 + L2 LINE L2 2181 2505 -809 843 146 108 155 chr6 54339959 54340275 -128074967 - AluJb SINE Alu 0 302 2 1252 94 94 0 chr6 54340300 54340481 -128074761 - AluY SINE Alu -112 199 2 189 191 71 0 chr6 54340519 54340561 -128074681 + L2 LINE L2 2702 2746 -568 332 366 30 0 chr6 54340955 54341056 -128074186 + L2 LINE L2 3164 3267 -5 2413 67 0 0 chr6 54341453 54341751 -128073491 + AluY SINE Alu 1 298 -13 21 0 0 0 chr6 54342655 54342676 -128072566 + AT_rich Low_complexity Low_complexity 1 21 0 5484 196 53 4 chr6 54342761 54344177 -128071065 - L1PB1 LINE L1 -2747 4115 2630 8863 179 10 8 chr6 54344178 54346199 -128069043 + L1PB1 LINE L1 4131 6147 -720 3660 100 4 4 chr6 54346199 54346710 -128068532 - MER9 LTR ERVK 0 511 1 8863 179 10 8 chr6 54346710 54347054 -128068188 + L1PB1 LINE L1 6147 6489 -378 261 0 0 0 chr6 54347054 54347083 -128068159 + (TA)n Simple_repeat Simple_repeat 2 30 0 8863 179 10 8 chr6 54347083 54347446 -128067796 + L1PB1 LINE L1 6489 6866 -1 21 0 0 0 chr6 54347446 54347467 -128067775 + AT_rich Low_complexity Low_complexity 1 21 0 3205 101 11 0 chr6 54347467 54347941 -128067301 - L1MA1 LINE L1 -6 6296 5818 250 319 59 49 chr6 54348080 54348384 -128066858 + MLT1K LTR MaLR 263 569 -19 278 315 60 46 chr6 54349887 54350103 -128065139 - L2 LINE L2 0 3313 3095 209 266 75 0 chr6 54350494 54350588 -128064654 - L2 LINE L2 -1282 2032 1932 23 0 0 0 chr6 54350750 54350773 -128064469 + AT_rich Low_complexity Low_complexity 1 23 0 278 343 40 40 chr6 54350863 54351038 -128064204 + MIR SINE MIR 32 206 -56 21 0 0 0 chr6 54351936 54351957 -128063285 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 54352257 54352292 -128062950 + AT_rich Low_complexity Low_complexity 1 35 0 1939 87 22 0 chr6 54352498 54352773 -128062469 - L1PA13 LINE L1 -3 6160 5880 1378 244 86 63 chr6 54354010 54354486 -128060756 + MLT1D LTR MaLR 1 487 -18 1977 130 32 35 chr6 54354620 54354996 -128060246 - THE1C LTR MaLR 0 375 1 2358 74 0 10 chr6 54355977 54356288 -128058954 - AluY SINE Alu -3 308 1 1988 125 30 7 chr6 54356498 54356803 -128058439 - AluSx SINE Alu 0 312 1 919 302 42 6 chr6 54356836 54357167 -128058075 + L1MCc LINE L1 17 359 -6064 321 327 60 7 chr6 54357624 54357774 -128057468 + L1M4 LINE L1 3014 3171 -2975 25 31 0 0 chr6 54357774 54357806 -128057436 + AT_rich Low_complexity Low_complexity 1 32 0 302 308 47 6 chr6 54357837 54358009 -128057233 + L1M4 LINE L1 3937 4115 -2031 253 323 8 0 chr6 54358015 54358139 -128057103 + L1M4 LINE L1 4244 4368 -1778 367 265 25 12 chr6 54358199 54358361 -128056881 + L1M4 LINE L1 4460 4623 -1523 374 318 45 34 chr6 54358804 54358983 -128056259 + MIR SINE MIR 82 262 0 6491 133 17 23 chr6 54359817 54361019 -128054223 + L1MA3 LINE L1 4593 5783 -522 1251 267 3 0 chr6 54361019 54361311 -128053931 + AluJb SINE Alu 1 293 -9 6491 133 17 23 chr6 54361311 54361832 -128053410 + L1MA3 LINE L1 5783 6305 0 2752 194 4 4 chr6 54363071 54363613 -128051629 - L1MB1 LINE L1 -3 6165 5624 220 315 0 0 chr6 54364082 54364136 -128051106 - MER5A DNA MER1_type -7 182 129 464 225 18 0 chr6 54364384 54364495 -128050747 + MER104 DNA Tc2 2 114 -66 1649 170 68 12 chr6 54366253 54366576 -128048666 - L1PA16 LINE L1 0 6166 5826 363 78 0 0 chr6 54367630 54367681 -128047561 + (GA)n Simple_repeat Simple_repeat 2 52 0 20304 173 21 13 chr6 54367796 54371708 -128043534 + L1MA3 LINE L1 1 3941 -3624 11335 167 21 28 chr6 54371705 54373679 -128041563 + L1MA3 LINE L1 4245 5515 -2209 * 1282 102 5 42 chr6 54373679 54373739 -128041503 + L1MA1 LINE L1 6090 6151 -151 1807 176 0 10 chr6 54373739 54374045 -128041197 + AluJb SINE Alu 1 303 -9 1282 102 5 42 chr6 54374045 54374194 -128041048 + L1MA1 LINE L1 6151 6296 -6 11335 167 21 28 chr6 54374194 54375049 -128040193 + L1MA3 LINE L1 5515 6374 -1350 1971 137 9 29 chr6 54375049 54375391 -128039851 - MER1B DNA MER1_type 0 337 3 11335 167 21 28 chr6 54375391 54375878 -128039364 + L1MA3 LINE L1 6374 6863 -861 2126 96 3 20 chr6 54375878 54376208 -128039034 + AluSp SINE Alu 1 325 0 11335 167 21 28 chr6 54376208 54376347 -128038895 + L1MA3 LINE L1 6863 7681 -43 291 310 40 77 chr6 54378506 54378692 -128036550 - MIR SINE MIR -65 197 21 613 345 48 36 chr6 54379800 54380305 -128034937 + L1M3b LINE L1 1217 1727 -5769 2734 275 60 40 chr6 54380565 54382132 -128033110 + L1M3b LINE L1 2097 3589 -3976 3917 181 28 12 chr6 54382133 54382449 -128032793 + L1MA6 LINE L1 5478 5787 -513 516 72 0 0 chr6 54382449 54382518 -128032724 + (TA)n Simple_repeat Simple_repeat 1 69 0 3917 181 28 12 chr6 54382518 54383011 -128032231 + L1MA6 LINE L1 5787 6300 0 585 255 117 0 chr6 54383059 54383255 -128031987 + MIR SINE MIR 36 254 -8 314 159 14 0 chr6 54383256 54383325 -128031917 + (CACCAT)n Simple_repeat Simple_repeat 1 70 0 253 317 98 61 chr6 54383829 54384075 -128031167 + L2 LINE L2 2125 2379 -935 318 302 241 9 chr6 54384137 54384349 -128030893 + MIR SINE MIR 2 262 0 243 0 0 0 chr6 54385630 54385657 -128029585 + (ATG)n Simple_repeat Simple_repeat 2 28 0 9590 30 13 0 chr6 54385689 54386850 -128028392 - L1PA3 LINE L1 -3116 3030 1855 * 14272 32 0 0 chr6 54386846 54389972 -128025270 + L1PA3 LINE L1 3029 6155 0 289 188 0 0 chr6 54392340 54392438 -128022804 + Alu SINE Alu 235 332 0 2034 181 63 5 chr6 54392443 54392868 -128022374 + L1MC2 LINE L1 5890 6339 -5 232 366 0 21 chr6 54393452 54393545 -128021697 - L2 LINE L2 -5 3267 3177 2674 201 25 31 chr6 54393567 54394141 -128021101 - MER77 LTR ERV1 -4 601 54 207 288 0 17 chr6 54394159 54394218 -128021024 - L2 LINE L2 -76 3237 3180 495 318 42 45 chr6 54394268 54394579 -128020663 - L2 LINE L2 -142 3171 2862 197 340 43 32 chr6 54394982 54395076 -128020166 + MIR3 SINE MIR 91 185 -23 2038 196 88 9 chr6 54395253 54395708 -128019534 - MLT1D LTR MaLR -1 504 14 208 195 24 0 chr6 54397182 54397223 -128018019 - L2 LINE L2 -205 3067 3026 441 331 118 0 chr6 54398670 54398848 -128016394 - L1MEc LINE L1 -2865 3561 3363 649 81 11 0 chr6 54398949 54399036 -128016206 - AluS SINE Alu -223 89 2 252 0 0 0 chr6 54399114 54399142 -128016100 + (TG)n Simple_repeat Simple_repeat 2 29 0 255 31 0 0 chr6 54399168 54399200 -128016042 + (TG)n Simple_repeat Simple_repeat 2 33 0 931 216 48 6 chr6 54400110 54400425 -128014817 - L1MEc LINE L1 -3970 2637 2310 818 159 0 8 chr6 54400446 54400578 -128014664 + FLAM_C SINE Alu 1 131 -12 911 258 92 18 chr6 54400590 54401024 -128014218 - L1MEc LINE L1 -4322 2285 1820 355 319 59 8 chr6 54401025 54401144 -128014098 - L1MEc LINE L1 -5164 1262 1138 660 234 6 30 chr6 54401283 54401450 -128013792 + MIR SINE MIR 100 262 0 271 233 0 0 chr6 54401513 54401573 -128013669 + MIR SINE MIR 36 95 -167 355 113 16 16 chr6 54401588 54401650 -128013592 - MER96 DNA MER1_type? -2 173 112 223 282 59 24 chr6 54401994 54402079 -128013163 - L2 LINE L2 -461 2853 2766 763 274 109 53 chr6 54402826 54403315 -128011927 + L1MC4a LINE L1 5257 5780 -2028 1883 173 7 10 chr6 54403315 54403615 -128011627 + AluJb SINE Alu 1 299 -13 763 274 109 53 chr6 54403615 54403668 -128011574 + L1MC4a LINE L1 5780 5829 -1979 244 174 22 0 chr6 54404192 54404238 -128011004 - MLT1H LTR MaLR 0 549 503 551 200 128 0 chr6 54404346 54404471 -128010771 + MIR SINE MIR 81 221 -41 808 113 9 9 chr6 54406467 54406582 -128008660 + AluJo/FLAM SINE Alu 18 132 -180 1565 202 3 18 chr6 54406584 54406866 -128008376 + AluJb SINE Alu 1 278 -34 532 196 26 15 chr6 54406871 54407143 -128008099 + GA-rich Low_complexity Low_complexity 1 275 0 259 354 0 13 chr6 54407679 54407758 -128007484 - L2 LINE L2 -19 3294 3217 540 260 78 7 chr6 54408791 54408945 -128006297 - MER5B DNA MER1_type -1 177 13 258 214 48 87 chr6 54408977 54409080 -128006162 - MER5A DNA MER1_type -35 154 56 332 349 78 6 chr6 54409246 54409412 -128005830 + MER5B DNA MER1_type 1 178 0 202 299 47 37 chr6 54409414 54409521 -128005721 - L3 LINE CR1 -367 1210 1103 2223 110 0 23 chr6 54409823 54410131 -128005111 + AluSx SINE Alu 1 301 -11 410 373 52 30 chr6 54410216 54410487 -128004755 + L2 LINE L2 2996 3272 0 244 306 82 45 chr6 54410694 54410828 -128004414 - MIR SINE MIR -55 207 69 242 167 33 50 chr6 54411244 54411304 -128003938 + CT-rich Low_complexity Low_complexity 3 61 0 483 160 76 69 chr6 54411307 54411438 -128003804 - FLAM_C SINE Alu 0 133 2 188 149 85 21 chr6 54411865 54411912 -128003330 - L2 LINE L2 -6 3266 3217 303 85 0 0 chr6 54412106 54412153 -128003089 + (TG)n Simple_repeat Simple_repeat 2 48 0 475 288 0 6 chr6 54412186 54412363 -128002879 + (TG)n Simple_repeat Simple_repeat 2 177 0 950 209 0 6 chr6 54412593 54412775 -128002467 + MLT1A1 LTR MaLR 185 365 0 1067 218 5 14 chr6 54412990 54413210 -128002032 + MLT1E LTR MaLR 376 593 0 563 287 79 21 chr6 54413554 54413796 -128001446 - MIR SINE MIR 0 262 2 477 0 0 0 chr6 54414405 54414458 -128000784 + (CA)n Simple_repeat Simple_repeat 1 53 0 384 214 30 69 chr6 54414573 54414704 -128000538 - MLT1L LTR MaLR -6 609 484 402 281 10 99 chr6 54414948 54415140 -128000102 + MER5A DNA MER1_type 7 181 -8 410 189 0 0 chr6 54415711 54415785 -127999457 - MER52A LTR ERV1 0 1755 1682 * 4348 200 38 51 chr6 54415775 54416910 -127998332 - MER52A LTR ERV1 -559 1196 77 1454 153 58 8 chr6 54417209 54417451 -127997791 + AluJb SINE Alu 38 291 -21 953 191 173 58 chr6 54417551 54417897 -127997345 + MLT1D LTR MaLR 120 505 0 457 271 108 18 chr6 54418330 54418496 -127996746 - MER5A DNA MER1_type -6 183 3 383 270 10 0 chr6 54418508 54418608 -127996634 - MIR3 SINE MIR -27 181 81 235 170 132 0 chr6 54419593 54419646 -127995596 - L2 LINE L2 -19 3294 3235 * 298 193 241 0 chr6 54419631 54419714 -127995528 + L2 LINE L2 3211 3313 0 225 317 8 25 chr6 54420030 54420150 -127995092 + GA-rich Low_complexity Low_complexity 2 119 0 363 44 0 0 chr6 54421908 54421953 -127993289 + (GGCTG)n Simple_repeat Simple_repeat 5 49 0 239 339 52 9 chr6 54422128 54422243 -127992999 - MIR3 SINE MIR -78 130 11 428 268 213 11 chr6 54422904 54423087 -127992155 + MIR SINE MIR 5 224 -38 190 284 202 0 chr6 54423340 54423449 -127991793 - L2 LINE L2 -217 3055 2925 2088 145 0 0 chr6 54423451 54423747 -127991495 + AluJb SINE Alu 1 296 -16 597 307 97 50 chr6 54424134 54425022 -127990220 + L2 LINE L2 2335 3312 -1 1254 133 15 10 chr6 54425432 54425628 -127989614 - MER1B DNA MER1_type 0 339 143 1089 139 0 18 chr6 54425638 54425804 -127989438 - AluSg/x SINE Alu 0 312 150 1692 197 39 77 chr6 54426034 54426198 -127989044 + MLT1C LTR MaLR 8 177 -290 1907 159 3 3 chr6 54426198 54426494 -127988748 + AluJo SINE Alu 1 296 -16 1692 197 39 77 chr6 54426494 54426797 -127988445 + MLT1C LTR MaLR 177 457 -10 191 324 9 65 chr6 54426915 54427023 -127988219 - MIR SINE MIR -44 218 117 377 235 12 0 chr6 54429418 54429503 -127985739 - LTR16C LTR ERVL 0 491 406 246 171 0 0 chr6 54429770 54429811 -127985431 + Alu SINE Alu 49 89 -77 2042 127 0 3 chr6 54430019 54430356 -127984886 + AluSx SINE Alu 2 337 0 185 260 269 19 chr6 54430818 54430922 -127984320 - L2 LINE L2 -5 3267 3138 462 333 101 8 chr6 54431905 54432142 -127983100 - MIR SINE MIR -2 260 2 256 269 55 0 chr6 54432988 54433114 -127982128 - MIR SINE MIR -33 175 42 350 285 171 0 chr6 54433319 54433442 -127981800 - L2 LINE L2 -21 3251 3108 806 281 142 43 chr6 54434054 54434591 -127980651 - L2 LINE L2 -872 2442 1853 220 380 65 0 chr6 54434761 54434853 -127980389 + L2 LINE L2 3116 3213 -59 263 206 82 0 chr6 54434853 54434926 -127980316 + L1M4 LINE L1 4986 5064 -1082 288 200 0 43 chr6 54435033 54435103 -127980139 - L1MD3 LINE L1 -33 7962 7896 1711 237 9 16 chr6 54435105 54435536 -127979706 - L1MD3 LINE L1 -166 7829 7402 306 0 0 0 chr6 54435555 54435589 -127979653 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 523 290 0 22 chr6 54435982 54436120 -127979122 + MIR SINE MIR 23 157 -105 333 259 120 9 chr6 54436611 54436719 -127978523 + MIR SINE MIR 28 147 -115 233 336 61 30 chr6 54437172 54437303 -127977939 + MIR SINE MIR 126 260 -2 318 312 56 92 chr6 54438734 54438984 -127976258 - L2 LINE L2 -79 3193 2953 2255 98 10 0 chr6 54439766 54440062 -127975180 - AluSx SINE Alu -13 299 1 305 200 253 0 chr6 54441467 54441562 -127973680 - MER5A DNA MER1_type -32 157 39 302 214 133 10 chr6 54441604 54441702 -127973540 - MER5B DNA MER1_type -21 157 48 206 322 92 0 chr6 54441926 54442013 -127973229 + L2 LINE L2 3147 3241 -31 668 210 64 13 chr6 54445045 54445202 -127970040 - MER5B DNA MER1_type -13 165 1 464 246 55 55 chr6 54446253 54446436 -127968806 - MIR SINE MIR -61 201 19 250 241 17 0 chr6 54446490 54446548 -127968694 + MER5A DNA MER1_type 33 91 -98 684 96 56 16 chr6 54446951 54447076 -127968166 - MER41A LTR ERV1 -2 552 423 1193 73 34 6 chr6 54447217 54447394 -127967848 + MER41B LTR ERV1 1 182 -453 2283 126 0 0 chr6 54447514 54447815 -127967427 + AluSx SINE Alu 1 301 -11 295 231 88 16 chr6 54447846 54448004 -127967238 - LTR16A LTR ERVL -78 372 127 275 272 78 24 chr6 54448351 54448477 -127966765 - MIR SINE MIR -67 141 17 269 291 13 0 chr6 54449143 54449222 -127966020 - L2 LINE L2 -17 3296 3217 582 192 0 40 chr6 54449222 54449347 -127965895 + FLAM_C SINE Alu 13 132 -11 4429 84 11 9 chr6 54450287 54450919 -127964323 + MER41B LTR ERV1 1 633 -2 307 300 50 0 chr6 54450956 54451056 -127964186 + MIR SINE MIR 93 197 -65 745 188 0 30 chr6 54451175 54451308 -127963934 + MER58A DNA MER1_type 5 133 0 11638 114 28 25 chr6 54451419 54451605 -127963637 + Tigger1 DNA MER2_type 461 645 -1773 2711 137 17 9 chr6 54451605 54452065 -127963177 + L1PA16 LINE L1 5703 6166 0 11638 114 28 25 chr6 54452065 54453491 -127961751 + Tigger1 DNA MER2_type 645 2083 -335 1681 199 3 7 chr6 54453491 54453792 -127961450 + AluJo SINE Alu 2 301 -11 11638 114 28 25 chr6 54453792 54454129 -127961113 + Tigger1 DNA MER2_type 2083 2417 -1 1648 177 42 11 chr6 54455172 54455455 -127959787 - AluJo SINE Alu -20 292 1 359 307 106 82 chr6 54456009 54456338 -127958904 + L2 LINE L2 2934 3270 -2 253 239 104 15 chr6 54458745 54458812 -127956430 + L2 LINE L2 3199 3271 -1 648 244 15 13 chr6 54460528 54460711 -127954531 + MIR SINE MIR 19 197 -65 2107 110 11 7 chr6 54460715 54460996 -127954246 - AluSx SINE Alu -14 298 17 586 258 161 23 chr6 54461012 54461229 -127954013 - MIR SINE MIR -14 248 2 2152 124 6 16 chr6 54461654 54461969 -127953273 + AluSx SINE Alu 1 312 0 731 142 22 8 chr6 54462643 54462777 -127952465 - L1PB4 LINE L1 -90 6066 5931 279 262 19 28 chr6 54463213 54463320 -127951922 + LTR67 LTR ERVL 428 533 -24 659 179 77 6 chr6 54463803 54463971 -127951271 - MER104 DNA MER2_type 0 180 1 316 273 166 29 chr6 54463981 54464186 -127951056 - MIR SINE MIR 0 262 30 1813 199 79 19 chr6 54464638 54465070 -127950172 - L1ME1 LINE L1 -6 6160 5703 3974 32 0 2 chr6 54465083 54465578 -127949664 - L1PA4 LINE L1 -3 6152 5659 930 269 53 43 chr6 54465681 54466075 -127949167 - LTR16B LTR ERVL -66 398 1 939 238 167 3 chr6 54466077 54466371 -127948871 - L2 LINE L2 -988 2326 1985 293 306 87 11 chr6 54466491 54466709 -127948533 + LTR16A1 LTR ERVL 16 305 -145 624 283 16 65 chr6 54466875 54467122 -127948120 + L2 LINE L2 3075 3309 -4 572 240 20 7 chr6 54468418 54468568 -127946674 - MIR SINE MIR -98 164 13 366 229 55 122 chr6 54468720 54468851 -127946391 + MLT1C LTR MaLR 1 92 -298 2041 120 13 3 chr6 54468851 54469150 -127946092 + AluJb SINE Alu 1 302 -10 366 229 55 122 chr6 54469150 54469272 -127945970 + MLT1C LTR MaLR 92 221 -169 269 154 39 0 chr6 54469273 54469325 -127945917 + MIR SINE MIR 111 164 -98 849 238 43 23 chr6 54469433 54469689 -127945553 + MLT1C LTR MaLR 207 467 0 419 265 143 10 chr6 54470438 54470703 -127944539 + L1ME LINE L1 5526 5837 -284 634 180 0 9 chr6 54470703 54470814 -127944428 - FRAM SINE Alu -21 155 46 221 235 39 0 chr6 54472137 54472188 -127943054 + MIR SINE MIR 85 137 -125 219 274 0 0 chr6 54473115 54473166 -127942076 + L2 LINE L2 3213 3263 -9 267 31 0 0 chr6 54473168 54473200 -127942042 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 261 197 0 33 chr6 54474526 54474587 -127940655 + L2 LINE L2 3255 3313 0 2281 117 14 11 chr6 54474667 54475027 -127940215 - THE1B LTR MaLR 0 364 4 282 276 23 23 chr6 54475029 54475116 -127940126 - MIR SINE MIR -157 105 19 1274 211 45 102 chr6 54475386 54475810 -127939432 - MLT1C LTR MaLR 0 467 73 757 135 15 15 chr6 54475810 54475943 -127939299 + FLAM_C SINE Alu 1 133 0 1274 211 45 102 chr6 54475943 54476007 -127939235 - MLT1C LTR MaLR -394 73 7 581 226 8 0 chr6 54476348 54476472 -127938770 - L1MB7 LINE L1 -335 5849 5725 901 241 4 0 chr6 54476479 54476720 -127938522 - L1MA6 LINE L1 -17 6283 6042 943 229 67 32 chr6 54477443 54477548 -127937694 + MLT1H LTR MaLR 12 112 -437 1169 231 143 36 chr6 54477548 54477968 -127937274 - MLT1C LTR MaLR -2 465 1 943 229 67 32 chr6 54477968 54478115 -127937127 + MLT1H LTR MaLR 112 273 -276 561 252 124 41 chr6 54478085 54478327 -127936915 + MLT1H LTR MaLR 288 549 0 * 2026 122 14 0 chr6 54478408 54478722 -127936520 + AluSg1 SINE Alu 1 318 0 2206 100 0 4 chr6 54478808 54479137 -127936105 + AluSg SINE Alu 1 328 0 309 204 57 11 chr6 54480309 54480397 -127934845 + L3 LINE CR1 1398 1489 -88 293 269 58 10 chr6 54480424 54480528 -127934714 - MIR SINE MIR -73 189 81 557 208 117 13 chr6 54481801 54481955 -127933287 + LTR16C LTR ERVL 316 485 -6 955 266 37 0 chr6 54482940 54483184 -127932058 - MIR SINE MIR -5 257 5 2130 110 11 0 chr6 54483289 54483593 -127931649 + AluSx SINE Alu 1 307 0 677 208 23 17 chr6 54483622 54483795 -127931447 + MLT2B1 LTR ERVL 1 174 -346 184 379 9 9 chr6 54484363 54484479 -127930763 - MIR SINE MIR -71 137 22 231 300 29 0 chr6 54484479 54484549 -127930693 + (CATG)n Simple_repeat Simple_repeat 1 72 0 350 307 59 13 chr6 54485397 54485550 -127929692 + LTR16C LTR ERVL 83 242 -249 459 274 14 14 chr6 54485610 54485756 -127929486 + LTR16C LTR ERVL 346 491 0 271 303 30 91 chr6 54485780 54485946 -127929296 + MIR SINE MIR 35 189 -61 2593 66 0 0 chr6 54486405 54486706 -127928536 + AluSq SINE Alu 1 301 -12 343 296 21 5 chr6 54486714 54486914 -127928328 + (CATCC)n Simple_repeat Simple_repeat 1 203 0 641 319 20 0 chr6 54487303 54487507 -127927735 + MIR SINE MIR 9 216 -46 338 229 0 0 chr6 54487618 54487679 -127927563 - MST-int LTR MaLR -897 754 694 6143 91 9 1 chr6 54488391 54489736 -127925506 + L1PA5 LINE L1 4810 6153 -1 322 265 33 60 chr6 54490477 54490628 -127924614 - MIR SINE MIR -2 260 114 401 212 8 42 chr6 54490736 54490854 -127924388 + Charlie4 DNA MER1_type 1826 1939 -22 1966 122 17 17 chr6 54491304 54491599 -127923643 + AluSx SINE Alu 1 295 -17 205 349 24 12 chr6 54491774 54491857 -127923385 + L2 LINE L2 3187 3270 -2 300 133 0 0 chr6 54491934 54491994 -127923248 + (GA)n Simple_repeat Simple_repeat 2 61 0 569 228 57 0 chr6 54494215 54494338 -127920904 - MIR SINE MIR -108 154 25 2452 72 3 0 chr6 54495326 54495631 -127919611 - AluY SINE Alu -5 306 1 209 308 94 19 chr6 54495910 54496069 -127919173 - MIR SINE MIR -71 191 21 397 246 70 18 chr6 54497294 54497408 -127917834 + MIR3 SINE MIR 8 127 -81 594 296 55 38 chr6 54497502 54497611 -127917631 - LTR67 LTR ERVL -5 552 446 1761 145 42 53 chr6 54497611 54497652 -127917590 - THE1C LTR MaLR 0 375 335 2232 103 3 7 chr6 54497652 54497952 -127917290 + AluSx SINE Alu 1 299 -13 1761 145 42 53 chr6 54497952 54498289 -127916953 - THE1C LTR MaLR -40 335 1 594 296 55 38 chr6 54498289 54498470 -127916772 - LTR67 LTR ERVL -111 446 257 250 105 0 0 chr6 54498978 54499016 -127916226 - MLT2B2 LTR ERVL -6 509 472 279 140 0 0 chr6 54499040 54499090 -127916152 + (TG)n Simple_repeat Simple_repeat 1 50 0 241 266 83 118 chr6 54499422 54499591 -127915651 + MLT1I LTR MaLR 96 258 -151 22 0 0 0 chr6 54500784 54500806 -127914436 + AT_rich Low_complexity Low_complexity 1 22 0 221 167 0 0 chr6 54501032 54501074 -127914168 + T-rich Low_complexity Low_complexity 1 42 0 7707 23 0 0 chr6 54501075 54502156 -127913086 - L1PA3 LINE L1 -3 6152 5072 30 0 0 0 chr6 54504199 54504229 -127911013 + AT_rich Low_complexity Low_complexity 1 30 0 215 370 16 24 chr6 54504432 54504559 -127910683 - L3 LINE CR1 -840 737 612 813 273 97 43 chr6 54504684 54505168 -127910074 + L2 LINE L2 2531 3042 -271 2544 32 0 3 chr6 54506266 54506576 -127908666 + L1PA5 LINE L1 5840 6148 -6 29 28 0 0 chr6 54507116 54507152 -127908090 + AT_rich Low_complexity Low_complexity 1 36 0 252 314 44 14 chr6 54507484 54507630 -127907612 + MLT1G LTR MaLR 21 210 -339 413 221 36 93 chr6 54507825 54508066 -127907176 + MLT1G LTR MaLR 322 573 -17 246 176 0 0 chr6 54508340 54508391 -127906851 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 245 235 0 0 chr6 54508477 54508528 -127906714 - L1MC4 LINE L1 -1333 6709 6659 180 333 65 28 chr6 54508622 54508730 -127906512 - MIR SINE MIR -67 195 84 2034 142 3 0 chr6 54508773 54509082 -127906160 - AluSg SINE Alu 0 310 1 318 287 259 0 chr6 54509355 54509498 -127905744 - MER5A DNA MER1_type -6 183 4 5253 91 11 5 chr6 54509827 54510574 -127904668 - L1PA7 LINE L1 -1303 4843 4093 6432 64 48 0 chr6 54510574 54511842 -127903400 + L1PA7 LINE L1 4844 6154 0 1449 224 65 9 chr6 54513624 54513963 -127901279 + MLT2D LTR ERVL 1 358 -56 256 130 22 0 chr6 54514046 54514092 -127901150 + MLT2D LTR ERVL 469 515 0 1903 154 85 23 chr6 54514190 54514716 -127900526 - MLT2A2 LTR ERVL 0 554 1 21 36 0 0 chr6 54515456 54515484 -127899758 + AT_rich Low_complexity Low_complexity 1 28 0 7802 17 0 0 chr6 54515528 54516613 -127898629 - L1PA3 LINE L1 0 6155 5072 30 0 0 0 chr6 54518653 54518683 -127896559 + AT_rich Low_complexity Low_complexity 1 30 0 264 378 146 8 chr6 54518886 54519140 -127896102 - L3 LINE CR1 -840 737 449 * 827 271 97 43 chr6 54519136 54519620 -127895622 + L2 LINE L2 2531 3042 -271 2572 32 0 0 chr6 54520718 54521027 -127894215 + L1PA5 LINE L1 5840 6148 -6 260 395 87 30 chr6 54521418 54521717 -127893525 + L2 LINE L2 2662 2977 -337 336 299 124 5 chr6 54521838 54522039 -127893203 + L2 LINE L2 3084 3308 -5 303 224 20 126 chr6 54522116 54522362 -127892880 - L1MC5 LINE L1 -99 7862 7643 349 328 91 32 chr6 54522505 54522699 -127892543 - L1MC5 LINE L1 -243 7718 7537 313 0 51 34 chr6 54522699 54522758 -127892484 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 349 328 91 32 chr6 54522758 54522968 -127892274 - L1MC5 LINE L1 -424 7537 7290 230 238 82 16 chr6 54523092 54523214 -127892028 - L1MC4a LINE L1 -633 7175 7046 7387 39 6 0 chr6 54524568 54525952 -127889290 - L1PA5 LINE L1 -1 6153 4766 877 272 61 90 chr6 54526256 54527129 -127888113 + L1MC5 LINE L1 6279 6975 -833 295 238 6 83 chr6 54527157 54527325 -127887917 + L1MC5 LINE L1 7763 7917 -44 441 0 0 0 chr6 54527981 54528030 -127887212 + (TG)n Simple_repeat Simple_repeat 2 50 0 1749 196 0 0 chr6 54529741 54530047 -127885195 + AluJb SINE Alu 6 311 -1 2420 93 0 6 chr6 54530051 54530362 -127884880 + AluSc SINE Alu 1 309 0 250 114 23 0 chr6 54531015 54531059 -127884183 - MADE1 DNA Mariner -34 46 2 627 244 23 112 chr6 54531150 54531408 -127883834 - MLT1H LTR MaLR -312 237 3 26 0 0 0 chr6 54531628 54531654 -127883588 + AT_rich Low_complexity Low_complexity 1 26 0 212 229 200 0 chr6 54532519 54532589 -127882653 + MIR SINE MIR 71 154 -108 1014 282 149 25 chr6 54532649 54533178 -127882064 - MLT1G1 LTR MaLR 0 595 1 303 243 69 28 chr6 54534887 54535031 -127880211 - L1MEc LINE L1 -1420 4795 4646 22 0 0 0 chr6 54535035 54535057 -127880185 + AT_rich Low_complexity Low_complexity 1 22 0 1311 278 127 46 chr6 54535098 54537151 -127878091 - L1MEc LINE L1 -1712 4503 2286 640 323 130 11 chr6 54537592 54538053 -127877189 - L1MEc LINE L1 -4634 1762 1247 225 0 0 0 chr6 54538053 54538078 -127877164 + (CA)n Simple_repeat Simple_repeat 2 26 0 1600 27 0 0 chr6 54538739 54538966 -127876276 + L1PA2 LINE L1 5957 6183 0 22 70 0 0 chr6 54539155 54539198 -127876044 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr6 54539379 54539411 -127875831 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 54539449 54539471 -127875771 + AT_rich Low_complexity Low_complexity 1 22 0 218 188 42 0 chr6 54539683 54539731 -127875511 - L2 LINE L2 -1 3312 3263 22 35 0 0 chr6 54540703 54540732 -127874510 + AT_rich Low_complexity Low_complexity 1 29 0 1172 256 28 36 chr6 54541290 54541645 -127873597 - MLT2E LTR ERVL -2 626 275 1986 244 61 6 chr6 54541645 54542120 -127873122 - REP3 LTR ERV 0 562 62 2128 188 95 44 chr6 54543013 54543048 -127872194 + MER89 LTR ERV1 7 39 -520 1728 179 73 0 chr6 54543048 54543389 -127871853 + MER47A DNA MER2_type 1 366 0 2128 188 95 44 chr6 54543389 54543879 -127871363 + MER89 LTR ERV1 39 559 0 242 367 124 24 chr6 54544020 54544189 -127871053 - MIR SINE MIR 0 262 77 343 350 24 0 chr6 54544622 54544745 -127870497 + MER5B DNA MER1_type 52 177 -1 975 230 0 22 chr6 54544752 54544974 -127870268 - MER20 DNA MER1_type -1 218 2 425 308 34 0 chr6 54545020 54545137 -127870105 - MER5A DNA MER1_type -1 188 68 594 116 158 0 chr6 54545825 54545920 -127869322 + THE1C LTR MaLR 1 110 -265 7082 40 6 2 chr6 54545953 54546826 -127868416 + L1PA5 LINE L1 5276 6151 -3 326 265 33 60 chr6 54547570 54547721 -127867521 - MIR SINE MIR -2 260 114 405 212 8 42 chr6 54547829 54547947 -127867295 + Charlie4 DNA MER1_type 1826 1939 -22 1934 122 17 17 chr6 54548397 54548692 -127866550 + AluSx SINE Alu 1 295 -17 204 349 24 12 chr6 54548867 54548950 -127866292 + L2 LINE L2 3187 3270 -2 300 133 0 0 chr6 54549027 54549087 -127866155 + (GA)n Simple_repeat Simple_repeat 2 61 0 582 234 73 15 chr6 54549428 54549565 -127865677 + MER91B DNA MER1_type 2 146 -44 297 167 0 77 chr6 54549616 54549694 -127865548 - L2 LINE L2 -79 3234 3163 1441 137 115 11 chr6 54549707 54549977 -127865265 - Tigger1 DNA MER2_type 0 2418 2121 887 161 0 78 chr6 54550077 54550149 -127865093 - Tigger1 DNA MER2_type -336 2082 2006 1248 231 23 13 chr6 54550149 54550456 -127864786 + AluJo SINE Alu 1 310 -2 887 161 0 78 chr6 54550456 54550575 -127864667 - Tigger1 DNA MER2_type -412 2006 1906 11130 154 16 21 chr6 54550662 54550826 -127864416 - Tigger1 DNA MER2_type -493 1925 1762 2391 54 7 7 chr6 54550826 54551123 -127864119 + AluY SINE Alu 1 297 -14 11130 154 16 21 chr6 54551123 54552259 -127862983 - Tigger1 DNA MER2_type -656 1762 636 303 49 0 0 chr6 54552259 54552300 -127862942 + (TG)n Simple_repeat Simple_repeat 2 42 0 11130 154 16 21 chr6 54552300 54552933 -127862309 - Tigger1 DNA MER2_type -1782 636 1 536 296 22 43 chr6 54552933 54553163 -127862079 - L2 LINE L2 -163 3150 2926 1050 281 21 11 chr6 54553865 54554150 -127861092 + MLT1E LTR MaLR 306 593 0 1353 184 153 48 chr6 54555136 54555548 -127859694 + MSTB2 LTR MaLR 3 457 0 1625 294 62 47 chr6 54556921 54558161 -127857081 + L1ME3A LINE L1 4876 6133 -37 222 377 53 9 chr6 54558539 54558653 -127856589 - MIR SINE MIR -78 184 66 182 408 50 25 chr6 54558719 54558839 -127856403 + L2 LINE L2 3140 3262 -10 258 56 0 0 chr6 54560053 54560089 -127855153 + (CA)n Simple_repeat Simple_repeat 2 37 0 281 156 0 16 chr6 54560280 54560344 -127854898 + CT-rich Low_complexity Low_complexity 3 65 0 1922 187 24 29 chr6 54561430 54561987 -127853255 - MLT2A2 LTR ERVL 0 554 1 2066 136 0 16 chr6 54562321 54562630 -127852612 + AluSx SINE Alu 1 304 -8 3772 191 99 2 chr6 54562836 54563733 -127851509 - L1 LINE L1 -845 5301 4318 505 252 84 62 chr6 54563833 54564059 -127851183 + MIR SINE MIR 32 262 0 385 83 14 14 chr6 54564198 54564270 -127850972 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 37 69 0 0 chr6 54564872 54564944 -127850298 + AT_rich Low_complexity Low_complexity 1 72 0 2915 198 78 6 chr6 54565001 54565667 -127849575 - L1MC3 LINE L1 -7 7778 7065 224 270 14 14 chr6 54566031 54566105 -127849137 - L3b LINE CR1 -196 1387 1314 1444 211 60 88 chr6 54566138 54566179 -127849063 - MLT2B1 LTR ERVL 0 520 479 210 37 0 0 chr6 54566179 54566206 -127849036 + (TG)n Simple_repeat Simple_repeat 2 28 0 1444 211 60 88 chr6 54566206 54566699 -127848543 - MLT2B1 LTR ERVL -41 479 1 28 48 0 0 chr6 54566850 54566892 -127848350 + AT_rich Low_complexity Low_complexity 1 42 0 259 292 36 58 chr6 54567064 54567201 -127848041 - L2 LINE L2 -18 3295 3162 260 199 33 40 chr6 54567276 54567427 -127847815 + (TAA)n Simple_repeat Simple_repeat 3 152 0 384 148 111 12 chr6 54567565 54567646 -127847596 - L1MC3 LINE L1 -15 7770 7682 1833 174 42 94 chr6 54567705 54568206 -127847036 + LTR42 LTR ERVL 4 478 -17 629 266 128 24 chr6 54568222 54568542 -127846700 - L2 LINE L2 -171 3142 2804 2108 134 0 6 chr6 54569129 54569443 -127845799 - AluSx SINE Alu 0 312 1 180 401 94 5 chr6 54569724 54569916 -127845326 - MIR SINE MIR -23 239 31 873 197 152 26 chr6 54570534 54570803 -127844439 + MER58D DNA MER1_type 79 381 -5 578 188 8 39 chr6 54571040 54571168 -127844074 + FLAM_C SINE Alu 1 124 -9 25 0 0 0 chr6 54571169 54571194 -127844048 + AT_rich Low_complexity Low_complexity 1 25 0 1813 213 28 44 chr6 54571340 54571773 -127843469 + MSTB LTR MaLR 1 426 0 7060 219 28 28 chr6 54571773 54573424 -127841818 + MSTB-int LTR MaLR 1 1651 0 2043 200 24 21 chr6 54573424 54573849 -127841393 + MSTB LTR MaLR 1 426 0 1789 130 0 0 chr6 54574278 54574525 -127840717 + AluSq SINE Alu 4 250 -63 25 0 0 0 chr6 54574525 54574550 -127840692 + AT_rich Low_complexity Low_complexity 1 25 0 315 338 14 27 chr6 54575326 54575474 -127839768 + MER5A DNA MER1_type 38 183 -6 678 261 68 3 chr6 54575520 54575874 -127839368 + LTR40c LTR ERVL 44 441 -21 2091 96 18 0 chr6 54575967 54576268 -127838974 + AluSp SINE Alu 1 306 0 267 103 0 0 chr6 54576472 54576511 -127838731 + (CA)n Simple_repeat Simple_repeat 2 40 0 879 81 8 0 chr6 54577381 54577505 -127837737 - AluY SINE Alu -11 300 176 226 270 16 0 chr6 54578968 54579031 -127836211 - LTR50 LTR ERVL -122 673 610 363 289 158 18 chr6 54579204 54579352 -127835890 - LTR50 LTR ERVL -514 281 155 221 0 0 33 chr6 54579352 54579382 -127835860 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 363 289 158 18 chr6 54579382 54579461 -127835781 - LTR50 LTR ERVL -640 155 22 379 134 24 0 chr6 54580071 54580153 -127835089 + CT-rich Low_complexity Low_complexity 3 86 0 2309 61 0 4 chr6 54581033 54581311 -127833931 + AluY SINE Alu 11 287 -24 2204 86 0 0 chr6 54581662 54581940 -127833302 - AluSp SINE Alu -35 278 1 255 313 87 20 chr6 54582354 54582549 -127832693 - L2 LINE L2 -1312 2002 1795 180 0 0 0 chr6 54582580 54582600 -127832642 + (TAA)n Simple_repeat Simple_repeat 1 20 0 354 181 105 67 chr6 54582633 54582738 -127832504 - MIR SINE MIR -74 188 80 1476 84 15 5 chr6 54582742 54582944 -127832298 + AluY SINE Alu 100 303 -8 27 0 0 0 chr6 54583432 54583459 -127831783 + AT_rich Low_complexity Low_complexity 1 27 0 1209 152 41 4 chr6 54583467 54583710 -127831532 - L1MA8 LINE L1 -4 6287 6036 283 98 0 0 chr6 54583880 54583921 -127831321 + MER21A LTR ERV1 538 578 -353 27 49 0 0 chr6 54584610 54584651 -127830591 + AT_rich Low_complexity Low_complexity 1 41 0 247 367 55 31 chr6 54585777 54585905 -127829337 - MIR SINE MIR -111 151 21 264 293 0 0 chr6 54586124 54586199 -127829043 + (TG)n Simple_repeat Simple_repeat 2 76 0 195 42 0 0 chr6 54586945 54586969 -127828273 + (T)n Simple_repeat Simple_repeat 1 24 0 213 322 35 46 chr6 54587176 54587263 -127827979 - MIR3 SINE MIR -122 86 1 26 0 0 0 chr6 54587533 54587559 -127827683 + AT_rich Low_complexity Low_complexity 1 26 0 287 355 103 7 chr6 54588139 54588294 -127826948 + MIR3 SINE MIR 33 202 -6 266 60 0 140 chr6 54589553 54589603 -127825639 + MLT1B LTR MaLR 1 43 -347 836 200 30 6 chr6 54589613 54589778 -127825464 + MLT1B LTR MaLR 222 390 0 345 192 126 26 chr6 54590462 54590613 -127824629 + MER104 DNA Tc2 14 179 -1 1235 126 56 9 chr6 54591449 54591664 -127823578 - L1P LINE L1 -1265 4881 4657 776 51 10 0 chr6 54591664 54591756 -127823486 + L1PA7 LINE L1 6047 6145 -9 539 271 132 49 chr6 54591836 54592233 -127823009 - MLT1E LTR MaLR -131 411 7 357 258 0 0 chr6 54592250 54592413 -127822829 + (TA)n Simple_repeat Simple_repeat 1 163 0 350 343 116 37 chr6 54592795 54593311 -127821931 - HAL1 LINE L1 -768 1739 1183 26 50 0 0 chr6 54593311 54593351 -127821891 + AT_rich Low_complexity Low_complexity 1 40 0 883 349 105 57 chr6 54594511 54595702 -127819540 - L2 LINE L2 0 3313 1970 1536 211 39 11 chr6 54595702 54596057 -127819185 + MLT1A1 LTR MaLR 1 365 0 883 349 105 57 chr6 54596057 54596891 -127818351 - L2 LINE L2 -1343 1970 1178 195 289 0 0 chr6 54596938 54596990 -127818252 - L2 LINE L2 -247 3066 3015 25 0 0 0 chr6 54597912 54597937 -127817305 + AT_rich Low_complexity Low_complexity 1 25 0 1221 235 17 24 chr6 54598499 54598788 -127816454 - MLT1C LTR MaLR 0 467 181 8408 94 2 19 chr6 54598906 54600410 -127814832 - L1PA7 LINE L1 -13 6141 4661 2139 93 7 0 chr6 54600410 54600690 -127814552 - AluSg1 SINE Alu -17 292 11 8408 94 2 19 chr6 54600690 54601187 -127814055 - L1PA7 LINE L1 -1493 4661 4157 512 249 12 59 chr6 54601188 54601357 -127813885 - MLT1C LTR MaLR -298 169 9 189 0 0 0 chr6 54601660 54601681 -127813561 + (T)n Simple_repeat Simple_repeat 1 21 0 2323 57 0 54 chr6 54601717 54602033 -127813209 - AluY SINE Alu -12 299 1 243 353 8 42 chr6 54603375 54603494 -127811748 + L3 LINE CR1 362 476 -1101 345 24 0 0 chr6 54603866 54603908 -127811334 + (TG)n Simple_repeat Simple_repeat 2 43 0 213 178 0 0 chr6 54604281 54604326 -127810916 + CT-rich Low_complexity Low_complexity 1 45 0 405 113 28 0 chr6 54604326 54604397 -127810845 - L1PA16 LINE L1 -1 6165 6093 314 264 157 16 chr6 54605295 54605416 -127809826 - MLT1E1 LTR MaLR -516 138 1 1083 275 87 88 chr6 54605417 54606097 -127809145 - MLT1E3-int LTR MaLR -1 1370 692 595 285 89 31 chr6 54606320 54606361 -127808881 - MLT1E3-int LTR MaLR -765 606 569 1715 115 0 4 chr6 54606361 54606604 -127808638 - AluSc SINE Alu -9 300 59 595 285 89 31 chr6 54606604 54607020 -127808222 - MLT1E3-int LTR MaLR -802 569 1 1699 260 48 34 chr6 54607020 54607654 -127807588 - MLT1E3 LTR MaLR 0 624 6 910 358 46 29 chr6 54607730 54608387 -127806855 - HERV16 LTR ERVL -1145 4619 3952 1115 263 146 24 chr6 54608402 54608821 -127806421 + MLT1D LTR MaLR 32 501 -4 1670 333 59 45 chr6 54609486 54610124 -127805118 - HERV16 LTR ERVL -2417 2600 1972 1788 108 90 7 chr6 54610124 54610403 -127804839 + AluSx SINE Alu 1 302 -10 1670 333 59 45 chr6 54610403 54611062 -127804180 - HERV16 LTR ERVL -3045 1972 1187 279 316 54 18 chr6 54611044 54611212 -127804030 - HERV16 LTR ERVL -4202 794 621 * 657 328 15 38 chr6 54611779 54612041 -127803201 - LTR16A LTR ERVL -12 438 183 221 281 0 0 chr6 54612209 54612266 -127802976 + CT-rich Low_complexity Low_complexity 2 58 0 1184 247 26 45 chr6 54612311 54612692 -127802550 + MLT1A2 LTR MaLR 1 374 0 833 131 0 15 chr6 54612864 54612994 -127802248 - AluY SINE Alu -143 168 41 851 103 0 0 chr6 54613029 54613146 -127802096 + AluSg/x SINE Alu 182 298 -14 25 0 0 0 chr6 54613443 54613468 -127801774 + AT_rich Low_complexity Low_complexity 1 25 0 404 312 81 0 chr6 54613843 54614029 -127801213 + MLT1G LTR MaLR 344 544 -46 243 333 0 0 chr6 54614100 54614178 -127801064 - MIR SINE MIR -1 261 184 * 267 354 27 27 chr6 54614170 54614317 -127800925 - MIR SINE MIR -15 247 101 242 87 22 0 chr6 54615226 54615272 -127799970 + (TTTTA)n Simple_repeat Simple_repeat 4 50 0 2155 16 0 0 chr6 54615273 54615521 -127799721 - L1PA2 LINE L1 -5 6150 5903 227 362 150 0 chr6 54615521 54615648 -127799594 - MIR3 SINE MIR -47 161 16 22 56 0 0 chr6 54615834 54615870 -127799372 + AT_rich Low_complexity Low_complexity 1 36 0 1018 151 19 19 chr6 54617118 54617324 -127797918 - L1 LINE L1 -760 5386 5181 3728 159 55 10 chr6 54617324 54618043 -127797199 + L1MA4A LINE L1 5538 6294 -9 441 0 0 0 chr6 54618625 54618674 -127796568 + (TA)n Simple_repeat Simple_repeat 2 50 0 214 200 0 0 chr6 54618939 54618979 -127796263 + A-rich Low_complexity Low_complexity 1 40 0 184 114 68 0 chr6 54620001 54620045 -127795197 + CT-rich Low_complexity Low_complexity 5 51 0 253 393 78 14 chr6 54620146 54620365 -127794877 + MIR SINE MIR 20 252 -10 413 369 13 7 chr6 54621271 54621420 -127793822 - L3 LINE CR1 -6 1571 1422 297 343 29 17 chr6 54621436 54621608 -127793634 - LTR33 LTR ERVL 0 521 348 578 281 202 15 chr6 54621721 54621988 -127793254 + L2 LINE L2 582 898 -2416 184 269 58 39 chr6 54622028 54622080 -127793162 + L2 LINE L2 1494 1546 -1768 796 301 32 94 chr6 54622082 54622565 -127792677 + L2 LINE L2 2689 3123 -190 2009 114 3 3 chr6 54622565 54622854 -127792388 + AluSc SINE Alu 1 289 -20 796 301 32 94 chr6 54622854 54623031 -127792211 + L2 LINE L2 3123 3309 -4 199 390 21 0 chr6 54623257 54623352 -127791890 + MER5A DNA MER1_type 53 149 -40 22 70 0 0 chr6 54624119 54624162 -127791080 + AT_rich Low_complexity Low_complexity 1 43 0 5807 116 12 6 chr6 54624412 54626251 -127788991 - L1PA14 LINE L1 -10 6151 4301 505 182 11 0 chr6 54626257 54626345 -127788897 - L1PA14 LINE L1 -2074 4072 3984 * 1737 185 0 9 chr6 54626337 54626661 -127788581 + L1PA14 LINE L1 3673 3993 -2153 348 250 0 0 chr6 54626666 54626746 -127788496 - L1MC4 LINE L1 -1339 6703 6624 2189 84 0 7 chr6 54626747 54627033 -127788209 - AluY SINE Alu -27 284 1 2054 136 7 0 chr6 54627221 54627529 -127787713 - AluSg SINE Alu 0 310 1 180 0 0 0 chr6 54627533 54627553 -127787689 + (T)n Simple_repeat Simple_repeat 1 20 0 1361 272 91 47 chr6 54628296 54629038 -127786204 - L1ME3A LINE L1 -8 6162 5375 1065 145 0 0 chr6 54629038 54629217 -127786025 + (TA)n Simple_repeat Simple_repeat 1 179 0 1361 272 91 47 chr6 54629217 54629334 -127785908 - L1ME3A LINE L1 -795 5375 5265 23 0 0 0 chr6 54629435 54629458 -127785784 + AT_rich Low_complexity Low_complexity 1 23 0 397 50 33 0 chr6 54629491 54629551 -127785691 + (TA)n Simple_repeat Simple_repeat 1 62 0 554 282 108 21 chr6 54629554 54629972 -127785270 - L1ME3A LINE L1 -913 5233 4780 441 289 96 20 chr6 54630001 54630406 -127784836 - L1ME3A LINE L1 -1446 4700 4265 292 228 13 0 chr6 54630406 54630485 -127784757 - MER116 DNA Mariner 0 80 1 768 305 38 35 chr6 54630505 54630533 -127784709 - L1ME3A LINE L1 -1906 4240 4214 2293 136 27 5 chr6 54630533 54630900 -127784342 - THE1C LTR MaLR 0 375 1 768 305 38 35 chr6 54630900 54631478 -127783764 - L1ME3A LINE L1 -1932 4214 3632 479 343 46 0 chr6 54631541 54631824 -127783418 + L1M4 LINE L1 3313 3608 -2538 996 270 141 6 chr6 54632090 54632708 -127782534 + LTR50 LTR ERVL 6 793 -2 303 28 0 0 chr6 54632901 54632937 -127782305 + (TG)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr6 54632936 54632958 -127782284 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 25 51 0 0 chr6 54633447 54633486 -127781756 + AT_rich Low_complexity Low_complexity 1 39 0 661 258 17 11 chr6 54633688 54633866 -127781376 + LTR41 LTR ERVL 1 179 -594 228 323 15 0 chr6 54634190 54634255 -127780987 + LTR41 LTR ERVL 512 577 -196 387 166 42 11 chr6 54634278 54634389 -127780853 + LTR50 LTR ERVL 664 793 -2 294 239 119 101 chr6 54635473 54635632 -127779610 - MER5B DNA MER1_type 0 178 17 926 116 24 216 chr6 54636356 54636648 -127778594 + LTR23 LTR ERV1 1 236 -201 965 171 19 28 chr6 54636749 54636965 -127778277 + LTR23 LTR ERV1 224 437 0 1545 185 57 12 chr6 54637077 54637412 -127777830 - L1MA6 LINE L1 -472 5828 5479 2192 179 29 40 chr6 54637415 54637528 -127777714 + L1MA6 LINE L1 5829 5942 -358 1500 179 33 16 chr6 54637528 54637835 -127777407 + AluJb SINE Alu 1 312 0 2192 179 29 40 chr6 54637835 54638197 -127777045 + L1MA6 LINE L1 5942 6299 -1 2065 176 43 39 chr6 54638259 54638724 -127776518 + LTR24 LTR ERV1 1 467 0 274 289 39 19 chr6 54639724 54639828 -127775414 - 7SK RNA RNA -57 136 31 190 301 84 12 chr6 54639905 54639988 -127775254 - MIR SINE MIR -52 210 122 21 0 0 0 chr6 54640645 54640666 -127774576 + AT_rich Low_complexity Low_complexity 1 21 0 304 268 148 61 chr6 54641424 54641835 -127773407 + L1ME4a LINE L1 5532 5978 -143 270 81 0 0 chr6 54642536 54642573 -127772669 + (T)n Simple_repeat Simple_repeat 1 37 0 29 28 0 0 chr6 54643069 54643105 -127772137 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr6 54643748 54643772 -127771470 + AT_rich Low_complexity Low_complexity 1 24 0 325 310 13 19 chr6 54644746 54644795 -127770447 + MER103 DNA DNA 9 57 -109 396 0 0 0 chr6 54644795 54644839 -127770403 + (TG)n Simple_repeat Simple_repeat 2 45 0 325 310 13 19 chr6 54644839 54644947 -127770295 + MER103 DNA DNA 57 165 -1 6943 187 10 12 chr6 54645427 54647550 -127767692 + L1PA13 LINE L1 4045 6162 -1 1510 147 121 0 chr6 54648139 54648404 -127766838 + AluSx SINE Alu 1 297 -15 461 249 162 27 chr6 54650342 54650527 -127764715 + MIR SINE MIR 47 256 -6 1974 200 65 54 chr6 54650772 54650953 -127764289 - MER67D LTR ERV1 -4 510 333 3293 112 27 0 chr6 54650953 54651437 -127763805 + LOR1a LTR ERV1 1 497 0 1974 200 65 54 chr6 54651437 54651759 -127763483 - MER67D LTR ERV1 -181 333 1 915 254 22 0 chr6 54652999 54653227 -127762015 + L1M3 LINE L1 5573 5805 -378 1145 235 91 37 chr6 54653259 54653612 -127761630 - MLT1B LTR MaLR -18 372 1 366 269 76 38 chr6 54653623 54653861 -127761381 - L1M4 LINE L1 -999 5147 4901 1344 145 124 3 chr6 54654043 54654325 -127760917 - L1MA7 LINE L1 0 6291 5976 632 255 66 41 chr6 54654317 54654709 -127760533 - L1M4 LINE L1 -1416 4730 4329 * 9973 178 33 11 chr6 54654950 54655001 -127760241 + L1PA13 LINE L1 3267 3315 -2848 228 35 0 0 chr6 54655001 54655030 -127760212 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 9973 178 33 11 chr6 54655030 54656384 -127758858 + L1PA13 LINE L1 3315 4637 -1526 272 65 43 0 chr6 54656384 54656430 -127758812 + A-rich Low_complexity Low_complexity 2 49 0 9973 178 33 11 chr6 54656430 54657856 -127757386 + L1PA13 LINE L1 4637 6163 0 393 275 82 26 chr6 54657864 54658253 -127756989 - L1M4 LINE L1 -2561 3585 3175 1910 221 41 12 chr6 54658349 54658833 -127756409 - L1MC3 LINE L1 0 7785 7288 1078 244 67 23 chr6 54658840 54659436 -127755806 - MER76 LTR ERV -6 682 2 959 176 21 125 chr6 54659443 54659722 -127755520 - L1MC3 LINE L1 -499 7286 7037 360 305 27 14 chr6 54659704 54659927 -127755315 - L1M4 LINE L1 -2258 3888 3663 * 295 302 65 44 chr6 54660436 54660574 -127754668 - MIR SINE MIR -63 145 21 1534 196 10 25 chr6 54661348 54661664 -127753578 + MER74C LTR ERVL 158 460 0 2300 268 65 38 chr6 54661669 54662679 -127752563 - L1MDa LINE L1 -5403 1137 34 1206 273 86 35 chr6 54662715 54663221 -127752021 - L1MC4 LINE L1 -1 8041 7497 1812 140 7 18 chr6 54663221 54663535 -127751707 - AluSx SINE Alu 0 311 1 1206 273 86 35 chr6 54663535 54663632 -127751610 - L1MC4 LINE L1 -545 7497 7406 22 0 0 0 chr6 54663961 54663983 -127751259 + AT_rich Low_complexity Low_complexity 1 22 0 444 312 41 50 chr6 54664926 54665147 -127750095 - MLT1L LTR MaLR -200 415 197 189 171 0 0 chr6 54665559 54665594 -127749648 + (CA)n Simple_repeat Simple_repeat 2 36 0 183 301 71 26 chr6 54666301 54666414 -127748828 + L2 LINE L2 2844 2961 -352 400 188 0 0 chr6 54666422 54666491 -127748751 + MIR SINE MIR 52 120 -142 244 331 62 7 chr6 54666502 54666647 -127748595 + MIR SINE MIR 97 249 -13 201 156 0 0 chr6 54667651 54667683 -127747559 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 391 311 93 14 chr6 54667686 54667899 -127747343 - MIR SINE MIR -10 252 20 727 204 199 6 chr6 54668331 54668512 -127746730 + MER20 DNA MER1_type 1 216 -3 280 307 51 15 chr6 54668731 54668868 -127746374 + L1MC/D LINE L1 5693 5834 -1974 632 250 18 0 chr6 54668944 54669108 -127746134 - L1MD3 LINE L1 -11 7984 7818 793 228 53 0 chr6 54669108 54669279 -127745963 - MER58A DNA MER1_type 0 224 45 4209 241 92 43 chr6 54669297 54670981 -127744261 - L1MC4a LINE L1 -158 7650 5885 442 340 118 36 chr6 54671145 54671562 -127743680 + L1MC/D LINE L1 5301 5751 -411 22 0 0 0 chr6 54673840 54673862 -127741380 + AT_rich Low_complexity Low_complexity 1 22 0 1254 232 21 12 chr6 54675348 54675680 -127739562 + L1MC3 LINE L1 7451 7785 0 271 224 15 0 chr6 54677005 54677072 -127738170 + LTR60 LTR ERV1 1 68 -518 1143 262 26 14 chr6 54677176 54677527 -127737715 + LTR43 LTR ERV1 117 471 -131 253 364 42 17 chr6 54677816 54677934 -127737308 + MER5A DNA MER1_type 43 163 -26 181 114 0 45 chr6 54678058 54678102 -127737140 + (GAAAA)n Simple_repeat Simple_repeat 5 46 0 432 348 52 39 chr6 54678129 54678687 -127736555 + L1MEc LINE L1 100 664 -5732 707 232 92 97 chr6 54679261 54679659 -127735583 - MER66A LTR ERV1 -86 392 97 251 264 19 57 chr6 54679729 54679835 -127735407 - MIR SINE MIR -37 225 124 21 36 0 0 chr6 54680955 54680983 -127734259 + AT_rich Low_complexity Low_complexity 1 28 0 818 261 96 56 chr6 54681713 54682108 -127733134 + MLT1C LTR MaLR 57 467 0 21 36 0 0 chr6 54682223 54682251 -127732991 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr6 54682982 54683012 -127732230 + AT_rich Low_complexity Low_complexity 1 30 0 2293 151 22 35 chr6 54683023 54683486 -127731756 - L1MA4 LINE L1 -16 6284 5828 237 395 34 17 chr6 54684108 54684227 -127731015 + L2 LINE L2 3145 3265 -7 454 173 0 0 chr6 54684269 54684344 -127730898 - AluSg/x SINE Alu -18 292 218 235 173 0 80 chr6 54684503 54684578 -127730664 + A-rich Low_complexity Low_complexity 2 70 0 22 0 0 0 chr6 54684637 54684659 -127730583 + AT_rich Low_complexity Low_complexity 1 22 0 1589 149 0 0 chr6 54684664 54684913 -127730329 + AluSq SINE Alu 6 254 -59 27 62 0 0 chr6 54685228 54685276 -127729966 + AT_rich Low_complexity Low_complexity 1 48 0 580 366 78 0 chr6 54685990 54686362 -127728880 + MLT1J LTR MaLR 6 406 -105 251 106 35 94 chr6 54686461 54686546 -127728696 + A-rich Low_complexity Low_complexity 3 82 0 78 63 0 6 chr6 54686596 54686665 -127728577 + AT_rich Low_complexity Low_complexity 1 69 -89 257 45 0 45 chr6 54686665 54686709 -127728533 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 78 63 0 6 chr6 54686709 54686798 -127728444 + AT_rich Low_complexity Low_complexity 69 158 0 446 229 0 0 chr6 54688297 54688380 -127726862 + MLT1E1 LTR MaLR 3 85 -569 20357 105 14 4 chr6 54690068 54693872 -127721370 + L1PA7 LINE L1 2251 6088 -66 426 39 0 0 chr6 54693872 54693924 -127721318 + (CA)n Simple_repeat Simple_repeat 1 52 0 20357 105 14 4 chr6 54693924 54693992 -127721250 + L1PA7 LINE L1 6088 6154 0 13541 206 41 19 chr6 54694110 54695887 -127719355 + L1PA13 LINE L1 2 1737 -5060 1732 160 42 0 chr6 54695887 54696008 -127719234 + AluSx SINE Alu 1 115 -197 315 0 0 0 chr6 54696008 54696043 -127719199 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1732 160 42 0 chr6 54696043 54696209 -127719033 + AluSx SINE Alu 115 300 -12 13541 206 41 19 chr6 54696209 54696321 -127718921 + L1PA13 LINE L1 1737 1845 -4952 2110 103 0 0 chr6 54696321 54696625 -127718617 + AluY SINE Alu 1 304 0 13541 206 41 19 chr6 54696625 54699941 -127715301 + L1PA13 LINE L1 1845 5340 -1457 5659 133 16 13 chr6 54699945 54700974 -127714268 + L1PA13 LINE L1 5793 6807 -7 33 43 0 0 chr6 54701170 54701217 -127714025 + AT_rich Low_complexity Low_complexity 1 47 0 298 317 73 47 chr6 54701376 54701717 -127713525 + L1M4 LINE L1 2370 2719 -3427 849 334 28 70 chr6 54701724 54702368 -127712874 + L1PA13 LINE L1 788 1404 -6170 9021 259 94 20 chr6 54702791 54706556 -127708686 + L1PA13 LINE L1 2182 6301 -1283 1925 130 3 7 chr6 54706556 54706865 -127708377 + AluSx SINE Alu 1 308 0 9021 259 94 20 chr6 54706865 54707174 -127708068 + L1PA13 LINE L1 6301 6586 -998 2400 64 3 6 chr6 54707328 54707640 -127707602 - AluY SINE Alu 0 311 1 207 246 23 46 chr6 54707669 54707844 -127707398 + (TAAA)n Simple_repeat Simple_repeat 4 174 0 707 231 9 86 chr6 54708315 54708536 -127706706 + MER58C DNA MER1_type 11 214 -1 331 283 0 40 chr6 54708864 54708963 -127706279 - L1MC4 LINE L1 -1334 6708 6614 318 238 25 12 chr6 54708952 54709032 -127706210 - L1MCa LINE L1 -4358 2068 1988 * 1094 37 0 0 chr6 54710309 54710444 -127704798 + L1PA5 LINE L1 6020 6154 0 2008 102 0 4 chr6 54711218 54711493 -127703749 + AluY SINE Alu 2 275 -36 258 32 0 0 chr6 54711493 54711524 -127703718 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 463 324 46 46 chr6 54711569 54711807 -127703435 + MIR SINE MIR 21 258 -4 2151 70 0 28 chr6 54711807 54712264 -127702978 - AluY SINE Alu 0 451 3 23 0 0 0 chr6 54712268 54712291 -127702951 + AT_rich Low_complexity Low_complexity 1 23 0 301 260 14 14 chr6 54712338 54712411 -127702831 - MER2 DNA MER2_type 0 345 273 1882 151 0 0 chr6 54712460 54712739 -127702503 + AluSx SINE Alu 1 279 -33 1058 126 0 11 chr6 54712740 54712922 -127702320 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 771 149 17 35 chr6 54712924 54713520 -127701722 + GA-rich Low_complexity Low_complexity 1 585 0 810 155 75 37 chr6 54713521 54713708 -127701534 - MER2 DNA MER2_type -150 195 2 232 278 0 14 chr6 54713709 54713781 -127701461 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 373 365 89 5 chr6 54713972 54714186 -127701056 - MIR SINE MIR -11 251 20 21 57 0 0 chr6 54715078 54715113 -127700129 + AT_rich Low_complexity Low_complexity 1 35 0 1397 208 46 19 chr6 54715513 54715879 -127699363 + L1MC2 LINE L1 5969 6344 0 240 373 47 20 chr6 54715957 54716107 -127699135 - MIR SINE MIR -97 165 12 220 185 19 19 chr6 54716372 54716426 -127698816 + (TA)n Simple_repeat Simple_repeat 2 55 0 1247 234 39 102 chr6 54716725 54717293 -127697949 - L1MC4 LINE L1 0 8042 7511 424 333 0 0 chr6 54717895 54718012 -127697230 - MIR3 SINE MIR 0 208 92 1086 148 0 11 chr6 54718249 54718438 -127696804 + L1MA6 LINE L1 6108 6294 -6 1613 149 4 8 chr6 54719240 54719495 -127695747 + AluJb SINE Alu 1 254 -58 4481 37 4 0 chr6 54719632 54720173 -127695069 + L1PA4 LINE L1 5609 6151 -4 219 195 0 0 chr6 54720418 54720459 -127694783 - MIR SINE MIR -83 125 85 316 355 65 16 chr6 54720475 54720720 -127694522 + L2 LINE L2 2231 2487 -827 206 213 0 0 chr6 54721269 54721316 -127693926 - MIR SINE MIR -114 148 102 706 239 15 15 chr6 54724734 54724931 -127690311 - Charlie1b DNA MER1_type -241 282 86 1916 256 91 27 chr6 54725006 54725970 -127689272 - L1M4 LINE L1 -1566 4762 3737 699 294 60 25 chr6 54726204 54726462 -127688780 - L1MEc LINE L1 -4283 2113 1865 2171 110 16 0 chr6 54726462 54726770 -127688472 - AluSp SINE Alu 0 313 1 699 294 60 25 chr6 54726770 54726788 -127688454 - L1MEc LINE L1 -4531 1865 1849 450 0 0 0 chr6 54726788 54726838 -127688404 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 699 294 60 25 chr6 54726838 54726995 -127688247 - L1MEc LINE L1 -4547 1849 1664 8953 182 34 11 chr6 54727012 54727774 -127687468 - L1MA4 LINE L1 -9 6291 5548 293 100 20 0 chr6 54727774 54727824 -127687418 + (TTG)n Simple_repeat Simple_repeat 1 51 0 8953 182 34 11 chr6 54727824 54729830 -127685412 - L1MA4 LINE L1 -752 5548 3459 2787 39 17 0 chr6 54729838 54730199 -127685043 - L1P LINE L1 -743 5403 5037 5960 22 1 0 chr6 54730199 54730888 -127684354 + L1PA3 LINE L1 5462 6152 -3 4402 258 60 14 chr6 54730899 54733913 -127681329 - L1M4 LINE L1 -2643 3685 536 638 192 140 22 chr6 54784742 54784971 -127630271 + MER5C DNA MER1_type 1 256 -68 326 140 35 0 chr6 54784972 54785029 -127630213 + L1MA6 LINE L1 6233 6291 -9 268 161 0 0 chr6 54785041 54785103 -127630139 + L1MA7 LINE L1 6230 6291 0 194 266 114 13 chr6 54785105 54785184 -127630058 + MER5C DNA MER1_type 238 324 0 237 211 0 0 chr6 54786084 54786136 -127629106 + A-rich Low_complexity Low_complexity 1 52 0 343 66 0 33 chr6 54787012 54787073 -127628169 + (TG)n Simple_repeat Simple_repeat 2 60 0 975 227 23 101 chr6 54787593 54787989 -127627253 + MLT1A1 LTR MaLR 1 365 0 1721 313 60 51 chr6 54787992 54789187 -127626055 + L2 LINE L2 2092 3298 -15 22 35 0 0 chr6 54789719 54789748 -127625494 + AT_rich Low_complexity Low_complexity 1 29 0 2184 115 0 0 chr6 54790771 54791067 -127624175 - AluSq SINE Alu -17 296 1 2095 177 63 7 chr6 54791209 54791656 -127623586 + L1MB8 LINE L1 5701 6172 -6 904 119 86 0 chr6 54792870 54793021 -127622221 - MER54B LTR ERVL 0 793 630 382 214 31 20 chr6 54793010 54793108 -127622134 + MER54B LTR ERVL 543 641 -152 * 4289 145 70 6 chr6 54793204 54793928 -127621314 - MER4E LTR ERV1 -5 774 4 1412 174 6 77 chr6 54793938 54794249 -127620993 - MER54B LTR ERVL -504 289 1 262 310 20 30 chr6 54794674 54794774 -127620468 - L2 LINE L2 -3 3269 3171 2152 110 3 0 chr6 54795765 54796056 -127619186 + AluSc SINE Alu 1 292 -17 355 148 83 18 chr6 54797495 54797664 -127617578 + (TA)n Simple_repeat Simple_repeat 1 180 0 35 24 0 0 chr6 54797677 54797719 -127617523 + AT_rich Low_complexity Low_complexity 1 42 0 620 120 29 17 chr6 54797819 54797994 -127617248 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 287 68 96 0 chr6 54797994 54798067 -127617175 + (TA)n Simple_repeat Simple_repeat 1 80 0 639 99 0 68 chr6 54798067 54798259 -127616983 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 186 134 41 31 chr6 54798276 54798373 -127616869 + (TATAA)n Simple_repeat Simple_repeat 2 99 0 24 67 0 0 chr6 54798373 54798418 -127616824 + AT_rich Low_complexity Low_complexity 1 45 0 300 252 17 50 chr6 54798425 54798544 -127616698 - L1MCa LINE L1 -4355 2071 1957 35 24 0 0 chr6 54798550 54798592 -127616650 + AT_rich Low_complexity Low_complexity 1 42 0 237 253 44 33 chr6 54798874 54798965 -127616277 - L1M4 LINE L1 -2253 3893 3802 424 200 39 0 chr6 54798975 54799105 -127616137 - L1M4 LINE L1 -2947 3199 3065 858 153 58 150 chr6 54799108 54799382 -127615860 + LTR23 LTR ERV1 1 249 -188 211 40 0 133 chr6 54799395 54799470 -127615772 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 32 26 0 0 chr6 54799475 54799514 -127615728 + AT_rich Low_complexity Low_complexity 1 39 0 827 194 24 15 chr6 54799514 54799720 -127615522 + LTR23 LTR ERV1 230 437 0 1916 142 4 4 chr6 54799798 54800079 -127615163 + AluSx SINE Alu 3 283 -29 821 208 72 83 chr6 54800096 54800221 -127615021 + LTR23-int LTR ERV1 66 191 -4932 1384 211 29 29 chr6 54800221 54800533 -127614709 + AluJo SINE Alu 1 312 0 821 208 72 83 chr6 54800533 54800772 -127614470 + LTR23-int LTR ERV1 191 567 -4556 3794 173 42 10 chr6 54800773 54801462 -127613780 - MER50 LTR ERV1 -23 711 1 274 194 153 0 chr6 54802280 54802352 -127612890 + LTR23-int LTR ERV1 1131 1213 -5118 392 212 9 26 chr6 54802381 54802494 -127612748 + LTR23-int LTR ERV1 1289 1399 -4932 346 123 14 82 chr6 54802603 54802633 -127612609 + LTR23-int LTR ERV1 1380 1410 -4921 1016 164 95 125 chr6 54802633 54803097 -127612145 + LTR7 LTR ERV1 1 450 0 346 123 14 82 chr6 54803097 54803139 -127612103 + LTR23-int LTR ERV1 1410 1447 -4884 1846 198 90 42 chr6 54803155 54803372 -127611870 - LTR49 LTR ERV1 -23 572 367 3208 133 39 8 chr6 54803372 54803907 -127611335 - MER41C LTR ERV1 0 554 3 1846 198 90 42 chr6 54803907 54804235 -127611007 - LTR49 LTR ERV1 -228 367 1 496 144 0 41 chr6 54804235 54804332 -127610910 + LTR23-int LTR ERV1 1445 1537 -4794 182 37 37 0 chr6 54804460 54804487 -127610755 + (TAA)n Simple_repeat Simple_repeat 1 28 0 386 221 0 0 chr6 54804493 54804570 -127610672 + LTR49-int LTR ERV1 914 990 -4133 385 265 34 22 chr6 54804572 54804777 -127610465 + MER34C LTR ERV1 160 408 -177 708 231 81 0 chr6 54804778 54804951 -127610291 + LTR49-int LTR ERV1 1209 1395 -3728 636 216 14 0 chr6 54805005 54805153 -127610089 - LTR23-int LTR ERV1 -2617 2506 2357 1495 151 4 4 chr6 54805154 54805406 -127609836 - L1 LINE L1 -2305 3841 3590 * 6734 264 29 17 chr6 54805376 54807333 -127607909 - L1PA12 LINE L1 -2880 4704 2695 191 36 36 0 chr6 54807333 54807361 -127607881 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6734 264 29 17 chr6 54807361 54808652 -127606590 - L1PA12 LINE L1 -4889 2695 1422 463 168 53 11 chr6 54808665 54808760 -127606482 + LTR9 LTR ERV1 1 99 -513 5957 55 25 3 chr6 54808763 54809525 -127605717 - L1PA5 LINE L1 0 6154 5376 1760 206 35 69 chr6 54809525 54810049 -127605193 + LTR9 LTR ERV1 98 596 -16 2154 330 19 62 chr6 54810104 54811297 -127603945 - L1PA12 LINE L1 -5632 1949 1 375 226 8 51 chr6 54811302 54811471 -127603771 + LTR49-int LTR ERV1 2928 4221 -2035 2014 142 4 47 chr6 54811473 54812046 -127603196 - MER51A LTR ERV1 0 634 5 3039 178 26 5 chr6 54812052 54812670 -127602572 + LTR49-int LTR ERV1 4222 4852 -1479 5274 202 12 6 chr6 54812671 54813970 -127601272 - L1P5 LINE L1 -1727 4419 3083 3966 185 32 3 chr6 54813968 54815171 -127600071 + L1P5 LINE L1 4413 5647 -504 * 219 36 0 0 chr6 54816051 54816079 -127599163 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1708 143 57 14 chr6 54816081 54816361 -127598881 - AluSx SINE Alu -20 292 1 284 281 168 54 chr6 54816817 54817020 -127598222 + Charlie2 DNA MER1_type 83 308 -2474 244 216 122 0 chr6 54817356 54817430 -127597812 + MLT1I LTR MaLR 307 389 -20 4938 134 46 11 chr6 54817668 54819083 -127596159 + L1PA16 LINE L1 4706 6157 -9 256 306 49 28 chr6 54819211 54819355 -127595887 - MERVL LTR ERVL -2940 2545 2399 29 20 0 39 chr6 54819577 54819609 -127595633 + AT_rich Low_complexity Low_complexity 1 32 -17 868 132 60 6 chr6 54819609 54819776 -127595466 - L1MA8 LINE L1 -2 6289 6114 29 20 0 39 chr6 54819776 54819794 -127595448 + AT_rich Low_complexity Low_complexity 32 49 0 6198 43 5 2 chr6 54820154 54821016 -127594226 - L1PA5 LINE L1 -139 6015 5153 537 116 0 12 chr6 54821007 54821093 -127594149 - L1MA8 LINE L1 -194 6097 6013 * 22 0 0 0 chr6 54821965 54821987 -127593255 + AT_rich Low_complexity Low_complexity 1 22 0 1570 109 8 35 chr6 54822135 54822391 -127592851 - AluSx SINE Alu -15 297 49 207 318 141 0 chr6 54822418 54822503 -127592739 + MIR SINE MIR 150 246 -16 21 0 0 0 chr6 54823081 54823102 -127592140 + AT_rich Low_complexity Low_complexity 1 21 0 629 115 10 10 chr6 54824878 54824974 -127590268 - L1M1 LINE L1 -519 5786 5691 391 212 0 20 chr6 54825234 54825342 -127589900 + AluJ/FLAM SINE Alu 14 87 -215 251 315 37 37 chr6 54825476 54825584 -127589658 - MIR SINE MIR -58 150 43 265 335 89 6 chr6 54825813 54825971 -127589271 + MIR SINE MIR 61 231 -31 282 56 0 0 chr6 54827239 54827275 -127587967 + (CA)n Simple_repeat Simple_repeat 2 37 0 381 106 47 12 chr6 54828604 54828689 -127586553 + GA-rich Low_complexity Low_complexity 1 88 0 34 0 0 0 chr6 54828886 54828920 -127586322 + AT_rich Low_complexity Low_complexity 1 34 0 292 60 60 0 chr6 54828981 54829031 -127586211 + CT-rich Low_complexity Low_complexity 1 53 0 186 300 0 0 chr6 54829126 54829166 -127586076 + L2 LINE L2 3217 3256 -16 33 0 0 0 chr6 54830945 54830978 -127584264 + AT_rich Low_complexity Low_complexity 1 33 0 2074 113 0 14 chr6 54830978 54831270 -127583972 - AluSx SINE Alu -24 288 1 315 371 25 20 chr6 54831311 54831513 -127583729 + MIR SINE MIR 47 249 -13 260 306 14 0 chr6 54831525 54831597 -127583645 - L2 LINE L2 0 3313 3241 434 312 61 67 chr6 54831607 54831998 -127583244 - MLT1I LTR MaLR -20 389 1 206 300 67 42 chr6 54832000 54832120 -127583122 - L2 LINE L2 -74 3239 3117 472 238 45 68 chr6 54832741 54833077 -127582165 + L1MEd LINE L1 904 1231 -4888 478 305 111 30 chr6 54833314 54833612 -127581630 - L1MEd LINE L1 -5794 325 4 24 0 0 0 chr6 54833787 54833811 -127581431 + AT_rich Low_complexity Low_complexity 1 24 0 1934 177 68 0 chr6 54834026 54834421 -127580821 - MER95 LTR ERV -1 430 9 746 259 32 0 chr6 54834764 54834949 -127580293 + MIR SINE MIR 67 257 -5 24 0 0 0 chr6 54835050 54835074 -127580168 + AT_rich Low_complexity Low_complexity 1 24 0 12400 183 26 9 chr6 54836107 54838703 -127576539 + L1M1 LINE L1 8 3735 -3830 589 219 0 0 chr6 54838865 54838993 -127576249 + LTR49-int LTR ERV1 4849 4976 -1355 1326 223 0 42 chr6 54839003 54839286 -127575956 - AluJo SINE Alu -36 276 6 1528 203 3 17 chr6 54839300 54839596 -127575646 - AluJo SINE Alu -20 292 1 494 103 39 0 chr6 54839597 54839675 -127575567 + LTR23-int LTR ERV1 4969 5049 -1282 2251 138 14 9 chr6 54839682 54840031 -127575211 - THE1B LTR MaLR -11 353 3 10050 124 11 28 chr6 54840033 54841641 -127573601 - THE1B-int LTR MaLR 0 1580 1 2396 135 6 6 chr6 54841641 54842005 -127573237 - THE1B LTR MaLR 0 364 1 673 159 9 0 chr6 54842005 54842118 -127573124 + LTR23-int LTR ERV1 5045 5158 -1173 778 211 13 13 chr6 54842121 54842277 -127572965 + FRAM SINE Alu 1 153 -23 736 132 25 0 chr6 54842405 54842526 -127572716 + LTR23-int LTR ERV1 5313 5436 -895 541 221 15 15 chr6 54842526 54842662 -127572580 + AluJb SINE Alu 1 136 -176 2385 215 22 58 chr6 54842666 54843428 -127571814 + LTR23-int LTR ERV1 4427 5123 0 1040 168 23 0 chr6 54843444 54843617 -127571625 + AluSg/x SINE Alu 132 308 -4 1222 171 35 9 chr6 54843626 54843854 -127571388 + LTR23 LTR ERV1 5 238 -199 803 128 0 0 chr6 54843855 54843972 -127571270 + AluSg/x SINE Alu 186 302 -8 818 183 20 10 chr6 54843978 54844182 -127571060 + LTR23 LTR ERV1 230 467 0 1686 279 69 38 chr6 54844428 54845091 -127570151 + MER21B LTR ERV1 55 738 -125 233 247 0 13 chr6 54846263 54846340 -127568902 + A-rich Low_complexity Low_complexity 5 80 0 742 273 109 77 chr6 54846395 54846962 -127568280 - MLT1H1 LTR MaLR 0 555 1 414 0 0 0 chr6 54848714 54848760 -127566482 + (TG)n Simple_repeat Simple_repeat 2 47 0 1726 194 0 0 chr6 54849650 54849939 -127565303 - AluJb SINE Alu -19 293 5 2130 105 0 0 chr6 54851524 54851818 -127563424 + AluY SINE Alu 2 295 -16 2968 187 36 8 chr6 54851909 54852025 -127563217 + LTR29 LTR ERV1 3 114 -508 204 111 0 0 chr6 54852025 54852061 -127563181 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2968 187 36 8 chr6 54852061 54852547 -127562695 + LTR29 LTR ERV1 114 622 0 1673 210 92 107 chr6 54852657 54853395 -127561847 - LTR8A LTR ERV1 0 727 1 3326 181 20 0 chr6 54853719 54853804 -127561438 + L1MC2 LINE L1 5454 5535 -809 3326 185 22 32 chr6 54853804 54854529 -127560713 + L1MC2 LINE L1 5626 6344 0 3326 181 20 0 chr6 54854529 54854542 -127560700 + L1MC2 LINE L1 5535 6344 0 206 203 27 40 chr6 54854776 54854850 -127560392 + (TA)n Simple_repeat Simple_repeat 2 74 0 238 254 15 0 chr6 54855456 54855523 -127559719 + L1ME LINE L1 4885 4952 -1194 366 297 49 5 chr6 54855809 54855994 -127559248 + L1ME LINE L1 5319 5511 -653 21 0 0 0 chr6 54856067 54856088 -127559154 + AT_rich Low_complexity Low_complexity 1 21 0 1995 128 10 22 chr6 54856088 54856401 -127558841 + AluSc SINE Alu 1 309 0 1238 126 0 0 chr6 54856606 54856788 -127558454 + AluY SINE Alu 126 307 -4 1467 166 25 40 chr6 54856840 54857165 -127558077 + L1MA9 LINE L1 5993 6312 0 394 252 80 0 chr6 54857334 54857464 -127557778 + MLT1G3 LTR MaLR 1 139 -416 235 354 44 9 chr6 54858167 54858280 -127556962 - L2 LINE L2 -540 2774 2658 3658 189 37 37 chr6 54859051 54859912 -127555330 - L1MB1 LINE L1 -2 6166 5306 1891 236 26 36 chr6 54860059 54860640 -127554602 - L1MA9 LINE L1 -904 5242 4668 * 4080 193 34 48 chr6 54860639 54861631 -127553611 + L1MA9 LINE L1 5254 6231 -81 267 189 0 0 chr6 54861631 54861684 -127553558 + (CATA)n Simple_repeat Simple_repeat 3 55 0 681 233 0 0 chr6 54861750 54861879 -127553363 - FLAM_C SINE Alu -4 129 1 500 271 38 21 chr6 54861888 54862128 -127553114 - L1MB1 LINE L1 -2230 3916 3673 4486 69 9 0 chr6 54862318 54862900 -127552342 + LTR14C LTR ERVK 1 587 0 12793 96 2 6 chr6 54862900 54864683 -127550559 + HERVK14C LTR ERVK 1 1777 -5640 4850 83 0 2 chr6 54864683 54865322 -127549920 + HERVK14C LTR ERVK 1907 2544 -4873 * 14137 68 2 13 chr6 54865315 54866456 -127548786 + HERVK14C LTR ERVK 5289 6406 -1011 2220 93 0 0 chr6 54866456 54866775 -127548467 + AluY SINE Alu 1 319 0 14137 68 2 13 chr6 54866775 54867472 -127547770 + HERVK14C LTR ERVK 6406 7109 -308 4505 210 27 16 chr6 54867572 54868650 -127546592 + L1MA2 LINE L1 2338 3427 -2719 1689 199 83 119 chr6 54868867 54869629 -127545613 - LTR1B LTR ERV1 -85 741 8 9095 157 13 55 chr6 54869636 54872657 -127542585 + L1MA2 LINE L1 3421 6304 0 402 304 34 7 chr6 54872680 54872828 -127542414 + L1ME1 LINE L1 5467 5618 -548 2579 229 37 80 chr6 54872832 54873213 -127542029 + L1MCb LINE L1 1 397 -5648 180 0 0 0 chr6 54873213 54873233 -127542009 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2579 229 37 80 chr6 54873233 54873819 -127541423 + L1MCb LINE L1 397 927 -5118 535 435 112 10 chr6 54873825 54874227 -127541015 + L1ME1 LINE L1 5719 6161 -5 799 199 3 170 chr6 54875588 54875870 -127539372 + MER8 DNA MER2_type 1 235 -4 305 379 44 56 chr6 54876264 54876515 -127538727 - MIR SINE MIR -14 248 1 209 354 30 48 chr6 54877713 54877928 -127537314 + MIR SINE MIR 13 218 -44 2001 120 40 7 chr6 54879098 54879399 -127535843 - AluSx SINE Alu -1 311 1 24 0 0 0 chr6 54880414 54880438 -127534804 + AT_rich Low_complexity Low_complexity 1 24 0 2035 81 0 4 chr6 54880739 54880997 -127534245 - AluSg SINE Alu -51 259 3 26 0 0 0 chr6 54881256 54881282 -127533960 + AT_rich Low_complexity Low_complexity 1 26 0 2222 181 25 104 chr6 54881282 54881376 -127533866 + MLT2B2 LTR ERVL 1 101 -414 1099 221 66 68 chr6 54881376 54881742 -127533500 - MLT1A1 LTR MaLR 0 365 1 2222 181 25 104 chr6 54881742 54882206 -127533036 + MLT2B2 LTR ERVL 101 515 0 21 57 0 0 chr6 54882297 54882332 -127532910 + AT_rich Low_complexity Low_complexity 1 35 0 1360 233 72 53 chr6 54883477 54883647 -127531595 - L1MC4a LINE L1 -1978 5830 5665 7785 70 4 4 chr6 54883647 54884653 -127530589 - LTR13 LTR ERVK 0 1007 2 1360 233 72 53 chr6 54884653 54884955 -127530287 - L1MC4a LINE L1 -2143 5665 5349 276 264 77 71 chr6 54885665 54885991 -127529251 - L1MC4a LINE L1 -1643 4503 4176 1413 271 87 14 chr6 54886308 54886422 -127528820 + L1ME2 LINE L1 4447 4551 -1595 411 21 0 0 chr6 54886422 54886470 -127528772 + (TA)n Simple_repeat Simple_repeat 2 49 0 1413 271 87 14 chr6 54886470 54886928 -127528314 + L1ME2 LINE L1 4551 5061 -1085 731 243 72 59 chr6 54886937 54887241 -127528001 + L1ME2 LINE L1 5759 6066 -98 21 0 0 0 chr6 54887273 54887294 -127527948 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 54887788 54887817 -127527425 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 54887919 54887948 -127527294 + AT_rich Low_complexity Low_complexity 1 29 0 237 278 46 83 chr6 54888959 54889067 -127526175 - L2 LINE L2 0 3272 3169 307 372 78 50 chr6 54891510 54891768 -127523474 - HAL1 LINE L1 -2080 427 163 368 264 107 0 chr6 54892006 54892127 -127523115 + LTR33 LTR ERVL 368 501 -20 186 43 0 0 chr6 54892266 54892289 -127522953 + (TAA)n Simple_repeat Simple_repeat 2 24 0 188 346 58 19 chr6 54892300 54892404 -127522838 - L3 LINE CR1 -1 1576 1469 25 0 0 0 chr6 54892912 54892937 -127522305 + AT_rich Low_complexity Low_complexity 1 25 0 851 492 14 0 chr6 54894945 54895242 -127520000 - AluSq SINE Alu -2 301 1 31 58 0 0 chr6 54895629 54895681 -127519561 + AT_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr6 54895708 54895740 -127519502 + AT_rich Low_complexity Low_complexity 1 32 0 999 157 76 0 chr6 54895890 54896113 -127519129 - L1MA8 LINE L1 -2 6289 6050 1187 254 50 16 chr6 54896200 54896715 -127518527 + MER114 LTR ERV 45 577 -71 29 70 0 0 chr6 54897414 54897471 -127517771 + AT_rich Low_complexity Low_complexity 1 57 0 1955 117 7 42 chr6 54897569 54897877 -127517365 - AluSx SINE Alu -12 300 4 31 0 0 0 chr6 54898008 54898039 -127517203 + AT_rich Low_complexity Low_complexity 1 31 0 7438 139 36 20 chr6 54898068 54898245 -127516997 - HSMAR2 DNA Mariner -1 1301 1128 300 27 0 0 chr6 54898245 54898282 -127516960 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 7438 139 36 20 chr6 54898282 54899380 -127515862 - HSMAR2 DNA Mariner -174 1128 6 3898 181 34 62 chr6 54899384 54899515 -127515727 - L1MA9 LINE L1 -82 6230 6097 411 62 185 0 chr6 54899515 54899580 -127515662 - MADE1 DNA Mariner -3 77 1 3898 181 34 62 chr6 54899580 54900593 -127514649 - L1MA9 LINE L1 -215 6097 5118 22 0 0 0 chr6 54901354 54901376 -127513866 + AT_rich Low_complexity Low_complexity 1 22 0 790 194 0 0 chr6 54901377 54901511 -127513731 - AluJb SINE Alu -178 134 1 24 32 0 0 chr6 54901515 54901546 -127513696 + AT_rich Low_complexity Low_complexity 1 31 0 245 217 17 0 chr6 54903066 54903126 -127512116 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 251 28 28 0 chr6 54903827 54903863 -127511379 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 2212 68 4 4 chr6 54903863 54904142 -127511100 - AluY SINE Alu -32 279 1 228 35 0 0 chr6 54905294 54905323 -127509919 + (CCA)n Simple_repeat Simple_repeat 3 31 0 2423 61 3 0 chr6 54905354 54905651 -127509591 + AluY SINE Alu 1 298 -13 28 0 0 0 chr6 54906017 54906045 -127509197 + AT_rich Low_complexity Low_complexity 1 28 0 1366 227 7 26 chr6 54906048 54906352 -127508890 + AluJo SINE Alu 1 298 -14 507 285 43 52 chr6 54907008 54907334 -127507908 + L1MC4 LINE L1 7435 7757 -285 1609 126 3 56 chr6 54907334 54907619 -127507623 + LTR12 LTR ERV1 3 272 -442 300 218 39 0 chr6 54907624 54907702 -127507540 + LTR30 LTR ERV1 544 624 -98 505 178 140 9 chr6 54907703 54907810 -127507432 + LTR12 LTR ERV1 360 480 -234 233 240 39 19 chr6 54907988 54908092 -127507150 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 336 277 62 0 chr6 54908109 54908221 -127507021 + L1MC4 LINE L1 7907 8025 -17 2074 120 10 0 chr6 54908759 54909060 -127506182 + AluY SINE Alu 3 306 -5 1813 116 17 34 chr6 54909343 54909635 -127505607 + AluSp SINE Alu 3 289 -24 2461 90 0 0 chr6 54909735 54910057 -127505185 + LTR14C LTR ERVK 266 587 0 617 186 0 62 chr6 54910057 54910177 -127505065 + Charlie1a DNA MER1_type 48 159 -1296 3662 216 22 47 chr6 54910182 54910456 -127504786 + Charlie1a DNA MER1_type 291 570 -2191 1984 121 0 7 chr6 54910456 54910770 -127504472 - AluY SINE Alu 0 312 1 3662 216 22 47 chr6 54910770 54911590 -127503652 + Charlie1a DNA MER1_type 570 1358 -97 1087 250 63 73 chr6 54912123 54912605 -127502637 + MLT2B1 LTR ERVL 2 480 -40 425 99 12 0 chr6 54912605 54912686 -127502556 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1087 250 63 73 chr6 54912686 54912723 -127502519 + MLT2B1 LTR ERVL 480 516 -4 509 326 61 72 chr6 54912945 54913374 -127501868 + L2 LINE L2 2889 3312 -1 378 314 127 31 chr6 54915463 54915692 -127499550 - MIR SINE MIR -11 251 1 304 322 61 9 chr6 54915871 54915986 -127499256 - L2 LINE L2 -1064 2250 2130 525 294 81 15 chr6 54916527 54916724 -127498518 - MIR SINE MIR -5 257 48 609 200 43 14 chr6 54917006 54917146 -127498096 + Tigger1 DNA MER2_type 14 157 -2261 * 1143 160 34 5 chr6 54917138 54917344 -127497898 + Tigger1 DNA MER2_type 2205 2416 -2 247 384 90 0 chr6 54917646 54917779 -127497463 + L2 LINE L2 2949 3093 -179 2019 92 14 0 chr6 54918075 54918359 -127496883 + L1PA13 LINE L1 5870 6157 -6 531 218 109 57 chr6 54918386 54918615 -127496627 - Charlie5 DNA MER1_type -41 2571 2331 1938 120 145 6 chr6 54918618 54918935 -127496307 - MSTA LTR MaLR -67 361 1 850 234 35 5 chr6 54919199 54919396 -127495846 - MER3 DNA MER1_type -6 203 1 1948 129 35 27 chr6 54920428 54920800 -127494442 - THE1C LTR MaLR 0 375 1 396 0 0 0 chr6 54920925 54920969 -127494273 + (TA)n Simple_repeat Simple_repeat 1 44 0 36 62 0 0 chr6 54921516 54921580 -127493662 + AT_rich Low_complexity Low_complexity 1 64 0 317 349 89 20 chr6 54921693 54921839 -127493403 + MER5B DNA MER1_type 7 162 -16 1564 218 57 0 chr6 54921939 54922274 -127492968 - MLT1A1 LTR MaLR -11 354 1 2056 176 36 49 chr6 54924683 54925189 -127490053 - L1 LINE L1 -1617 4529 4031 489 255 94 42 chr6 54926531 54926723 -127488519 - MER63A DNA MER1_type -5 205 4 337 302 90 56 chr6 54927672 54927993 -127487249 + L2 LINE L2 2150 2481 -833 26 30 0 0 chr6 54929296 54929329 -127485913 + AT_rich Low_complexity Low_complexity 1 33 0 682 333 9 4 chr6 54929443 54929671 -127485571 - MIR SINE MIR -32 230 2 309 51 0 0 chr6 54930359 54930398 -127484844 + (CA)n Simple_repeat Simple_repeat 2 40 0 1707 252 64 30 chr6 54930736 54931204 -127484038 + MLT2B1 LTR ERVL 2 485 -35 232 119 214 0 chr6 54931249 54931291 -127483951 + MLT2C2 LTR ERVL 414 464 0 7962 14 0 0 chr6 54931315 54932713 -127482529 - L1HS LINE L1 0 6155 4758 187 246 73 73 chr6 54933500 54933610 -127481632 - MIR SINE MIR -55 207 98 294 87 0 0 chr6 54934018 54934064 -127481178 + (TG)n Simple_repeat Simple_repeat 2 47 0 550 335 96 11 chr6 54934154 54934426 -127480816 - LTR16A LTR ERVL -97 353 59 645 152 33 26 chr6 54934596 54934747 -127480495 - L1MA9 LINE L1 -2 6310 6159 261 197 0 0 chr6 54934754 54934815 -127480427 + CT-rich Low_complexity Low_complexity 2 62 0 1202 207 93 23 chr6 54934818 54934853 -127480389 - L1MA9 LINE L1 -159 6153 6122 2384 88 3 0 chr6 54934853 54935158 -127480084 - AluSp SINE Alu -6 307 2 1202 207 93 23 chr6 54935158 54935422 -127479820 - L1MA9 LINE L1 -190 6122 5833 * 2561 170 22 14 chr6 54935407 54936206 -127479036 + L1M2 LINE L1 4915 5726 -586 10124 84 12 8 chr6 54936248 54938507 -127476735 - L1PA7 LINE L1 0 6154 3943 2470 158 71 2 chr6 54940338 54940775 -127474467 + MLT1C LTR MaLR 1 467 0 1344 133 0 0 chr6 54940874 54941104 -127474138 + L1PA7 LINE L1 5942 6171 0 256 154 46 0 chr6 54941547 54941612 -127473630 + (TATG)n Simple_repeat Simple_repeat 1 68 0 23 0 0 0 chr6 54943668 54943691 -127471551 + AT_rich Low_complexity Low_complexity 1 23 0 601 276 79 28 chr6 54945334 54945588 -127469654 + L1ME3A LINE L1 5639 5905 -265 2551 108 0 0 chr6 54945711 54946090 -127469152 + L1PA13 LINE L1 5785 6163 0 25 75 0 0 chr6 54946271 54946324 -127468918 + AT_rich Low_complexity Low_complexity 1 53 0 380 20 20 0 chr6 54948001 54948050 -127467192 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 229 313 36 41 chr6 54948284 54948479 -127466763 - HAL1 LINE L1 -48 2459 2266 454 293 59 69 chr6 54948765 54948871 -127466371 - HAL1 LINE L1 -914 1593 1487 2494 55 3 3 chr6 54948871 54949180 -127466062 - AluY SINE Alu -2 309 1 454 293 59 69 chr6 54949180 54949664 -127465578 - HAL1 LINE L1 -1020 1487 1009 6289 185 36 11 chr6 54949858 54951011 -127464231 + MSTB-int LTR MaLR 471 1651 0 2160 177 31 14 chr6 54951011 54951429 -127463813 + MSTB LTR MaLR 1 425 -1 225 0 0 0 chr6 54951429 54951454 -127463788 + (TG)n Simple_repeat Simple_repeat 1 25 0 1800 279 63 20 chr6 54951478 54952113 -127463129 - L1ME1 LINE L1 -93 6073 5412 529 277 10 10 chr6 54952127 54952322 -127462920 - L1ME LINE L1 -686 5480 5286 5284 272 59 23 chr6 54952389 54954941 -127460301 - L1ME LINE L1 -889 5257 2550 4990 164 33 3 chr6 54954941 54955818 -127459424 + MER4D LTR ERV1 1 903 0 5284 272 59 23 chr6 54955818 54955907 -127459335 - L1ME LINE L1 -3596 2550 2466 26 0 0 0 chr6 54956019 54956045 -127459197 + AT_rich Low_complexity Low_complexity 1 26 0 351 316 117 19 chr6 54956391 54956657 -127458585 + HAL1 LINE L1 1519 1810 -697 240 170 0 0 chr6 54956900 54956953 -127458289 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 54957621 54957642 -127457600 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr6 54958782 54958832 -127456410 + AT_rich Low_complexity Low_complexity 1 50 0 257 286 8 92 chr6 54959473 54959592 -127455650 + MIR3 SINE MIR 93 201 -7 2122 158 78 0 chr6 54959990 54960390 -127454852 - L1MA6 LINE L1 -376 5924 5494 238 192 40 40 chr6 54961098 54961197 -127454045 + (TTAAA)n Simple_repeat Simple_repeat 3 101 0 9481 174 27 10 chr6 54961245 54963997 -127451245 - L1MA3 LINE L1 -1 7723 4915 261 0 0 0 chr6 54963997 54964026 -127451216 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 9481 174 27 10 chr6 54964026 54964259 -127450983 - L1MA3 LINE L1 -2809 4915 4687 19139 163 29 25 chr6 54964260 54967778 -127447464 - L1MA3 LINE L1 -3977 3588 55 48 53 0 0 chr6 54967916 54967992 -127447250 + AT_rich Low_complexity Low_complexity 1 76 0 713 284 5 10 chr6 54968278 54968479 -127446763 + MER77 LTR ERV1 396 595 -10 1051 219 158 0 chr6 54968541 54968820 -127446422 + MER2 DNA MER2_type 22 344 -1 807 257 74 56 chr6 54968953 54969276 -127445966 + L1ME1 LINE L1 5831 6159 -7 274 238 155 0 chr6 54969330 54969414 -127445828 - L2 LINE L2 -9 3304 3208 27 0 0 0 chr6 54970571 54970598 -127444644 + AT_rich Low_complexity Low_complexity 1 27 0 284 376 0 16 chr6 54970688 54970813 -127444429 + MIR3 SINE MIR 54 176 -32 1404 194 63 0 chr6 54971542 54971841 -127443401 - L1MA8 LINE L1 -22 6269 5952 234 247 0 0 chr6 54972283 54972360 -127442882 + (CA)n Simple_repeat Simple_repeat 2 78 0 286 346 88 16 chr6 54973349 54973655 -127441587 + MARNA DNA Mariner 15 342 -244 7320 24 1 36 chr6 54974323 54975436 -127439806 + L1PA4 LINE L1 5073 6152 -3 1762 280 75 36 chr6 54976264 54976377 -127438865 + L1MEc LINE L1 23 130 -6266 207 0 0 0 chr6 54976377 54976400 -127438842 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1762 280 75 36 chr6 54976400 54977285 -127437957 + L1MEc LINE L1 130 1060 -5336 694 270 30 13 chr6 54977332 54977565 -127437677 - L1M4 LINE L1 -1206 4940 4704 1575 262 102 62 chr6 54979046 54979836 -127435406 + L1ME2 LINE L1 5328 6149 -15 519 142 28 28 chr6 54980821 54980927 -127434315 - MER53 DNA DNA -1 188 83 2801 104 26 0 chr6 54980928 54981312 -127433930 + MLT2A2 LTR ERVL 1 394 -59 310 55 55 55 chr6 54981409 54981464 -127433778 + MLT2A2 LTR ERVL 390 444 0 392 221 11 11 chr6 54981495 54981590 -127433652 - MER53 DNA DNA -94 95 1 1253 59 20 0 chr6 54983772 54984133 -127431109 + (GAAA)n Simple_repeat Simple_repeat 1 368 0 240 307 49 93 chr6 54985193 54985312 -127429930 + L2 LINE L2 734 843 -2471 2227 62 0 28 chr6 54985312 54985638 -127429604 - AluY SINE Alu 0 318 1 240 307 49 93 chr6 54985638 54985722 -127429520 + L2 LINE L2 843 929 -2385 1200 316 118 41 chr6 54985729 54986639 -127428603 + L2 LINE L2 1381 2360 -954 207 356 25 25 chr6 54986667 54986785 -127428457 + L2 LINE L2 2554 2671 -643 25 31 0 0 chr6 54986896 54986928 -127428314 + AT_rich Low_complexity Low_complexity 1 32 0 2374 194 24 2 chr6 54987219 54987729 -127427513 + L1MB2 LINE L1 5644 6164 -7 520 194 16 0 chr6 54990022 54990146 -127425096 + CT-rich Low_complexity Low_complexity 2 127 0 213 337 0 53 chr6 54990173 54990268 -127424974 - MIR SINE MIR -94 168 79 242 133 20 71 chr6 54991239 54991337 -127423905 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 266 305 32 11 chr6 54992547 54992642 -127422600 + MER91A DNA MER1_type 2 98 -98 267 270 45 34 chr6 54992709 54992798 -127422444 + MIR SINE MIR 79 168 -94 28 0 0 0 chr6 54992802 54992830 -127422412 + AT_rich Low_complexity Low_complexity 1 28 0 201 133 0 0 chr6 54993647 54993677 -127421565 + (ATG)n Simple_repeat Simple_repeat 3 32 0 333 267 139 42 chr6 54996650 54996815 -127418427 - MIR SINE MIR -60 202 22 22 0 0 0 chr6 54997410 54997432 -127417810 + AT_rich Low_complexity Low_complexity 1 22 0 311 343 60 22 chr6 54997692 54997826 -127417416 - L2 LINE L2 0 3272 3134 871 285 24 0 chr6 54998273 54998526 -127416716 - MIR SINE MIR 0 262 4 184 339 0 32 chr6 54998761 54998823 -127416419 + MIR SINE MIR 7 66 -196 369 322 96 0 chr6 54998826 54998972 -127416270 + MLT1I LTR MaLR 6 165 -244 234 215 86 65 chr6 54999100 54999193 -127416049 + MIR SINE MIR 63 157 -105 181 337 81 47 chr6 54999326 54999498 -127415744 - L2 LINE L2 -766 2548 2371 215 329 98 28 chr6 54999850 54999993 -127415249 + MIR SINE MIR 99 251 -11 28 48 0 0 chr6 55000118 55000160 -127415082 + AT_rich Low_complexity Low_complexity 1 42 0 2312 67 0 3 chr6 55000521 55000841 -127414401 + AluY SINE Alu 1 319 0 21 0 0 0 chr6 55001232 55001253 -127413989 + AT_rich Low_complexity Low_complexity 1 21 0 338 288 77 12 chr6 55001464 55001634 -127413608 + L1MEc LINE L1 39 219 -6177 340 335 138 12 chr6 55002057 55002311 -127412931 + L1MEc LINE L1 600 885 -5320 3789 152 20 6 chr6 55002316 55003105 -127412137 + L1MA8 LINE L1 5167 5959 -332 180 401 8 15 chr6 55004104 55004236 -127411006 - MIR SINE MIR -112 150 20 218 330 275 9 chr6 55004451 55004560 -127410682 + L2 LINE L2 3116 3253 -19 348 176 0 0 chr6 55004634 55004702 -127410540 + (TA)n Simple_repeat Simple_repeat 2 69 0 186 337 20 41 chr6 55004924 55005022 -127410220 - MIR SINE MIR -48 214 119 2556 71 0 0 chr6 55005045 55005355 -127409887 - AluY SINE Alu -1 310 1 317 239 128 18 chr6 55006005 55006114 -127409128 + L2 LINE L2 3193 3313 0 3831 133 39 0 chr6 55008216 55008891 -127406351 - Tigger3(Golem) DNA MER2_type 0 3029 2329 3332 299 30 30 chr6 55008901 55010441 -127404801 + L1PBa LINE L1 3 1542 -5321 2294 177 56 9 chr6 55010437 55011295 -127403947 + L1PBb LINE L1 711 1612 -4592 * 31 76 0 0 chr6 55011324 55011390 -127403852 + AT_rich Low_complexity Low_complexity 1 66 0 806 244 92 62 chr6 55012266 55012667 -127402575 - MLT1C LTR MaLR -2 465 53 3133 95 117 113 chr6 55012917 55014029 -127401213 - pTR5 LTR ERV1 0 2438 990 421 148 0 0 chr6 55014265 55014346 -127400896 + pTR5 LTR ERV1 743 823 -1615 3101 100 112 116 chr6 55014352 55015466 -127399776 + pTR5 LTR ERV1 990 2438 0 311 233 17 41 chr6 55015782 55015954 -127399288 + (TTATA)n Simple_repeat Simple_repeat 3 170 0 5670 150 78 9 chr6 55016257 55017340 -127397902 + L1PB1 LINE L1 1 1157 -5706 9313 138 43 13 chr6 55017344 55018452 -127396790 + L1PB1 LINE L1 1311 2384 -4478 1465 114 0 5 chr6 55018452 55018653 -127396589 - AluSg/x SINE Alu -13 299 100 9313 138 43 13 chr6 55018653 55019873 -127395369 + L1PB1 LINE L1 2384 3708 -3154 7217 199 115 8 chr6 55019873 55021459 -127393783 + MER52A LTR ERV1 1 1755 0 8859 201 28 5 chr6 55021462 55024218 -127391024 + L1PB1 LINE L1 3708 6507 -360 243 0 0 0 chr6 55024284 55024311 -127390931 + (TA)n Simple_repeat Simple_repeat 2 28 0 2524 103 5 3 chr6 55024312 55024679 -127390563 + L1PB1 LINE L1 6500 6867 0 1002 273 26 23 chr6 55026204 55026589 -127388653 + L1MCc LINE L1 53 438 -5985 23 33 0 0 chr6 55077349 55077379 -127337863 + AT_rich Low_complexity Low_complexity 1 30 0 1328 181 41 23 chr6 55077771 55078081 -127337161 - MER61B LTR ERV1 -15 409 1 22 0 0 0 chr6 55079526 55079548 -127335694 + AT_rich Low_complexity Low_complexity 1 22 0 6909 32 0 6 chr6 55079548 55080381 -127334861 - L1PA4 LINE L1 -1 6154 5327 1158 65 0 0 chr6 55080379 55080534 -127334708 + L1P LINE L1 3294 3448 -2698 * 765 218 70 14 chr6 55081541 55081740 -127333502 + L1MB1 LINE L1 5971 6159 -9 23 68 0 0 chr6 55082386 55082430 -127332812 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr6 55082782 55082820 -127332422 + AT_rich Low_complexity Low_complexity 1 38 0 5030 213 54 64 chr6 55083027 55083716 -127331526 - L1MC4a LINE L1 0 7808 7114 180 0 0 0 chr6 55083716 55083736 -127331506 + (TC)n Simple_repeat Simple_repeat 1 20 0 1714 142 29 4 chr6 55083737 55084011 -127331231 - AluJb SINE Alu -31 281 1 5030 213 54 64 chr6 55084011 55084883 -127330359 - L1MC4a LINE L1 -693 7115 6260 340 216 182 7 chr6 55086256 55086404 -127328838 + MER104 DNA Tc2 4 177 -3 458 320 32 45 chr6 55086404 55086651 -127328591 + L2 LINE L2 2288 2531 -783 453 246 63 8 chr6 55086719 55086845 -127328397 - L1ME1 LINE L1 -7 6159 6027 295 175 35 0 chr6 55086857 55086914 -127328328 - L1ME1 LINE L1 -206 5958 5900 1163 43 0 38 chr6 55086928 55087114 -127328128 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2064 109 4 0 chr6 55087114 55087390 -127327852 - AluSc SINE Alu -32 277 1 18488 153 19 11 chr6 55087396 55093785 -127321457 - L1PA8 LINE L1 -3 6484 1 1465 244 6 6 chr6 55093784 55094137 -127321105 - L1ME1 LINE L1 -255 5909 5557 * 561 298 80 34 chr6 55094411 55094763 -127320479 + LTR52 LTR ERVL 3 370 -51 659 280 69 0 chr6 55095144 55095319 -127319923 + MER5A DNA MER1_type 1 187 -2 28 29 0 0 chr6 55095658 55095693 -127319549 + AT_rich Low_complexity Low_complexity 1 35 0 705 360 67 38 chr6 55095693 55096471 -127318771 + L2 LINE L2 2495 3304 -9 1270 237 36 24 chr6 55096900 55097237 -127318005 + MER58B DNA MER1_type 1 341 0 336 94 0 0 chr6 55099596 55099649 -127315593 + (TG)n Simple_repeat Simple_repeat 2 54 0 286 339 55 9 chr6 55100138 55100273 -127314969 - MIR SINE MIR -64 144 3 331 337 0 0 chr6 55100842 55100934 -127314308 + MIR SINE MIR 49 140 -122 2168 66 0 0 chr6 55100967 55101240 -127314002 + AluY SINE Alu 39 311 0 1379 184 80 69 chr6 55102800 55103234 -127312008 - THE1B LTR MaLR 0 428 1 11190 110 2 1 chr6 55103234 55104811 -127310431 - THE1B-int LTR MaLR 0 1580 1 2119 130 51 25 chr6 55104811 55105166 -127310076 - THE1B LTR MaLR 0 364 1 1958 139 0 0 chr6 55105492 55105805 -127309437 + AluSx SINE Alu 3 315 0 6166 96 7 10 chr6 55105806 55106969 -127308273 + L1PB1 LINE L1 4990 6150 -1 939 273 99 14 chr6 55107621 55107973 -127307269 + MLT1J1 LTR MaLR 1 382 -64 232 170 0 0 chr6 55107992 55108039 -127307203 + T-rich Low_complexity Low_complexity 1 47 0 307 317 80 10 chr6 55108218 55108417 -127306825 - L1M4 LINE L1 -968 5178 4966 738 176 11 11 chr6 55108715 55108891 -127306351 - L1MA6 LINE L1 0 6300 6125 4208 203 43 16 chr6 55108910 55110286 -127304956 - L1MA6 LINE L1 -69 6231 4814 * 7539 216 72 18 chr6 55110270 55112297 -127302945 - L1MA6 LINE L1 -1899 4247 2112 224 0 65 0 chr6 55112473 55112504 -127302738 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 1407 175 58 31 chr6 55112507 55112798 -127302444 - AluJo SINE Alu -5 307 9 53 40 0 0 chr6 55113020 55113094 -127302148 + AT_rich Low_complexity Low_complexity 1 74 0 207 0 0 0 chr6 55113210 55113233 -127302009 + (T)n Simple_repeat Simple_repeat 1 23 0 2217 104 0 10 chr6 55113629 55113936 -127301306 - AluSx SINE Alu -8 304 1 1837 73 92 11 chr6 55114001 55114289 -127300953 - AluY SINE Alu 0 309 1 194 292 108 0 chr6 55114887 55114952 -127300290 + L3 LINE CR1 1041 1112 -465 484 305 30 0 chr6 55115749 55115880 -127299362 - MER5A DNA MER1_type 0 189 55 1013 162 18 0 chr6 55116342 55116509 -127298733 - FRAM SINE Alu -8 168 1 184 194 167 14 chr6 55116544 55116616 -127298626 + MIR SINE MIR 124 206 -56 21 0 0 0 chr6 55117813 55117834 -127297408 + AT_rich Low_complexity Low_complexity 1 21 0 642 130 0 0 chr6 55118247 55118355 -127296887 + (GGA)n Simple_repeat Simple_repeat 2 109 0 359 301 26 9 chr6 55118783 55118896 -127296346 + MIR SINE MIR 117 231 -31 22 35 0 0 chr6 55119434 55119463 -127295779 + AT_rich Low_complexity Low_complexity 1 29 0 535 265 107 5 chr6 55119546 55119732 -127295510 + MLT1A1 LTR MaLR 26 206 -389 2079 108 20 0 chr6 55119776 55120072 -127295170 + AluSg SINE Alu 1 302 -8 1788 142 155 31 chr6 55120539 55120920 -127294322 - MSTA LTR MaLR 0 428 1 275 172 86 0 chr6 55121028 55121086 -127294156 + MLT2B3 LTR ERVL 9 71 -483 1374 237 50 31 chr6 55121183 55121541 -127293701 + MLT2B3 LTR ERVL 75 439 -115 797 213 50 30 chr6 55121542 55121744 -127293498 + MLT1A1 LTR MaLR 160 365 0 554 308 81 19 chr6 55121977 55122188 -127293054 - MIR SINE MIR -7 255 32 884 216 10 34 chr6 55122287 55122491 -127292751 + MER105 DNA DNA 1 199 -5 248 222 69 0 chr6 55122548 55122620 -127292622 - MLT1K LTR MaLR -7 581 505 2032 161 25 6 chr6 55125052 55125407 -127289835 - THE1B LTR MaLR 0 364 3 238 250 13 13 chr6 55125604 55125680 -127289562 + A-rich Low_complexity Low_complexity 6 81 0 935 131 0 0 chr6 55125714 55125851 -127289391 + FRAM SINE Alu 32 168 -8 618 282 83 62 chr6 55125853 55126497 -127288745 + HAL1b LINE L1 282 800 -548 219 103 0 0 chr6 55126768 55126807 -127288435 + (GA)n Simple_repeat Simple_repeat 2 40 0 694 159 7 58 chr6 55127077 55127215 -127288027 - FLAM_C SINE Alu -2 131 1 302 298 0 0 chr6 55127571 55127655 -127287587 + L1M4 LINE L1 2739 2822 -3324 22 35 0 0 chr6 55127748 55127777 -127287465 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr6 55127843 55127869 -127287373 + (CATA)n Simple_repeat Simple_repeat 2 27 0 322 232 88 16 chr6 55127870 55127995 -127287247 + L1M4 LINE L1 3069 3202 -2944 390 252 26 0 chr6 55128195 55128310 -127286932 + MER20 DNA MER1_type 98 215 -4 1010 315 79 32 chr6 55128433 55129192 -127286050 + L1M4 LINE L1 4109 4903 -1243 622 186 0 25 chr6 55129203 55129321 -127285921 + AluJb SINE Alu 174 288 -24 3564 246 84 67 chr6 55129649 55130510 -127284732 + L1M4 LINE L1 27 872 -5772 405 0 0 0 chr6 55130510 55130555 -127284687 + (CA)n Simple_repeat Simple_repeat 2 46 0 3564 246 84 67 chr6 55130555 55131749 -127283493 + L1M4 LINE L1 872 2044 -4600 2529 65 0 0 chr6 55131749 55132056 -127283186 + AluY SINE Alu 1 307 -4 3564 246 84 67 chr6 55132056 55133977 -127281265 + L1M4 LINE L1 2044 4136 -2508 587 121 59 44 chr6 55133977 55134146 -127281096 - MLT1B LTR MaLR -170 220 1 1687 199 40 10 chr6 55135593 55135990 -127279252 + L1MD3 LINE L1 7577 7985 -10 28 29 0 0 chr6 55137103 55137138 -127278104 + AT_rich Low_complexity Low_complexity 1 35 0 188 35 35 0 chr6 55137709 55137738 -127277504 + (TTTTTA)n Simple_repeat Simple_repeat 5 34 0 192 330 75 21 chr6 55141039 55141133 -127274109 + L2 LINE L2 3171 3269 -3 236 30 30 0 chr6 55141921 55141954 -127273288 + (GA)n Simple_repeat Simple_repeat 2 35 0 383 325 0 8 chr6 55143906 55144032 -127271210 + CT-rich Low_complexity Low_complexity 3 127 0 1791 136 28 163 chr6 55144175 55144860 -127270382 - MER4A LTR ERV1 0 465 1 311 0 0 25 chr6 55145008 55145048 -127270194 + (TTTTC)n Simple_repeat Simple_repeat 5 43 0 205 250 0 0 chr6 55145377 55145421 -127269821 + CT-rich Low_complexity Low_complexity 1 44 0 908 278 23 46 chr6 55145423 55145729 -127269513 - L1M4 LINE L1 -6084 458 160 3975 146 54 0 chr6 55145736 55146361 -127268881 + LTR28 LTR ERV1 3 661 -359 806 223 0 0 chr6 55146376 55146524 -127268718 + LTR28 LTR ERV1 763 910 -110 653 265 0 6 chr6 55146545 55146715 -127268527 - L1M4 LINE L1 -6372 170 2 191 204 20 0 chr6 55146784 55146833 -127268409 + CT-rich Low_complexity Low_complexity 5 54 0 27 0 0 0 chr6 55147575 55147602 -127267640 + AT_rich Low_complexity Low_complexity 1 27 0 2062 136 25 35 chr6 55148970 55149338 -127265904 - THE1B LTR MaLR 0 364 1 10722 116 19 2 chr6 55149384 55150922 -127264320 - THE1B-int LTR MaLR -16 1564 1 2309 118 25 25 chr6 55150922 55151286 -127263956 - THE1B LTR MaLR 0 364 1 1360 204 19 48 chr6 55151294 55151687 -127263555 + MER67C LTR ERV1 1 404 -236 339 25 0 0 chr6 55151707 55151747 -127263495 + (CA)n Simple_repeat Simple_repeat 2 41 0 382 231 91 8 chr6 55151754 55151875 -127263367 + MER67D LTR ERV1 381 511 -3 27 0 0 0 chr6 55152341 55152368 -127262874 + AT_rich Low_complexity Low_complexity 1 27 0 326 233 197 133 chr6 55152551 55152881 -127262361 + L3 LINE CR1 1132 1482 -95 228 163 0 0 chr6 55153421 55153464 -127261778 + CT-rich Low_complexity Low_complexity 2 44 0 2487 199 28 14 chr6 55154062 55154564 -127260678 + L1PA16 LINE L1 1 509 -6340 * 9144 225 100 19 chr6 55154557 55158267 -127256975 + L1PA16 LINE L1 2725 6754 -115 2454 84 0 0 chr6 55158267 55158577 -127256665 - AluY SINE Alu -1 310 1 9144 225 100 19 chr6 55158577 55158697 -127256545 + L1PA16 LINE L1 6754 6863 -6 272 407 111 25 chr6 55159192 55159472 -127255770 - L2 LINE L2 -11 3261 2958 231 362 21 14 chr6 55159499 55159640 -127255602 - LTR16A LTR ERVL -154 296 155 1445 271 57 19 chr6 55159775 55160755 -127254487 + L1MA6 LINE L1 2852 3873 -3692 349 249 11 17 chr6 55160811 55160992 -127254250 + (TA)n Simple_repeat Simple_repeat 1 180 0 10632 198 70 32 chr6 55161005 55164695 -127250547 + L1MA6 LINE L1 3869 7710 -9 242 307 114 0 chr6 55164729 55164817 -127250425 - LTR16A LTR ERVL -345 105 8 254 326 11 11 chr6 55165007 55165099 -127250143 - L2 LINE L2 -8 3305 3214 598 335 129 46 chr6 55165274 55165987 -127249255 + L3 LINE CR1 229 1000 -577 908 238 54 12 chr6 55165997 55166237 -127249005 - MER67C LTR ERV1 -460 250 1 1702 205 7 0 chr6 55166733 55167040 -127248202 + AluJo SINE Alu 1 309 -3 6657 137 13 16 chr6 55167308 55168438 -127246804 - L1MA2 LINE L1 -4 7719 6587 1527 153 114 0 chr6 55168438 55168716 -127246526 - AluSx SINE Alu 0 307 1 6657 137 13 16 chr6 55168716 55168878 -127246364 - L1MA2 LINE L1 -1136 6587 6426 2789 19 0 3 chr6 55168878 55169189 -127246053 - AluYb8 SINE Alu -8 310 1 6657 137 13 16 chr6 55169189 55169609 -127245633 - L1MA2 LINE L1 -1297 6426 6014 5755 72 32 1 chr6 55169628 55170405 -127244837 - L1PA8 LINE L1 -13 6159 5359 4410 119 9 0 chr6 55170392 55171081 -127244161 + L1PA8 LINE L1 4659 5353 -793 * 18309 170 49 27 chr6 55171061 55171938 -127243304 - L1MA2 LINE L1 -3346 4219 3363 2305 107 0 0 chr6 55171938 55172237 -127243005 - AluY SINE Alu -12 299 1 18309 170 49 27 chr6 55172237 55175473 -127239769 - L1MA2 LINE L1 -4202 3363 10 490 301 97 10 chr6 55175529 55175725 -127239517 - MIR SINE MIR -1 261 49 561 265 14 7 chr6 55176149 55176296 -127238946 + MER5B DNA MER1_type 30 177 -1 183 333 118 21 chr6 55176408 55176501 -127238741 - L2 LINE L2 -19 3253 3152 267 291 35 0 chr6 55177686 55177772 -127237470 + LTR48B LTR ERV1 1 89 -555 * 1041 236 127 36 chr6 55177758 55178169 -127237073 + MER39 LTR ERV1 260 707 0 465 264 118 11 chr6 55178169 55178347 -127236895 - L2 LINE L2 -1421 1893 1697 4288 99 7 54 chr6 55178361 55179059 -127236183 - L1PB1 LINE L1 -5 6146 5482 198 0 0 0 chr6 55179102 55179124 -127236118 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2431 92 0 0 chr6 55179124 55179452 -127235790 - L1PB1 LINE L1 -42 6109 5782 347 85 49 0 chr6 55179459 55179541 -127235701 + (TA)n Simple_repeat Simple_repeat 1 86 0 3010 93 7 5 chr6 55179541 55179980 -127235262 - L1PB1 LINE L1 -360 5791 5352 * 3120 142 4 8 chr6 55179961 55180460 -127234782 - L1PBa LINE L1 -5015 1848 1352 2891 129 20 0 chr6 55180440 55180896 -127234346 - L1PBa LINE L1 -5404 1459 995 * 1109 151 0 20 chr6 55180892 55181091 -127234151 - L1PBa LINE L1 -6665 198 4 * 3377 307 118 23 chr6 55181110 55182669 -127232573 - L2 LINE L2 -1607 1707 1 265 393 67 7 chr6 55183245 55183380 -127231862 + L2 LINE L2 3118 3260 -12 297 343 30 47 chr6 55183574 55183743 -127231499 + MIR SINE MIR 41 206 -56 7402 98 6 19 chr6 55184513 55185584 -127229658 - MER11C LTR ERVK -14 1057 1 243 61 0 0 chr6 55185860 55185893 -127229349 + (CAGAGA)n Simple_repeat Simple_repeat 3 35 0 1280 254 3 10 chr6 55186733 55187028 -127228214 - AluJo SINE Alu -19 293 1 3839 249 53 14 chr6 55187140 55188143 -127227099 + L1MD1 LINE L1 19 1060 -5480 1841 159 98 28 chr6 55188158 55188585 -127226657 + L1MA8 LINE L1 5770 6226 -65 1917 125 25 4 chr6 55188617 55188897 -127226345 + AluSc SINE Alu 4 289 -20 21 0 0 0 chr6 55188928 55188949 -127226293 + AT_rich Low_complexity Low_complexity 1 21 0 1003 195 88 26 chr6 55189026 55189333 -127225909 + L1MD1 LINE L1 1111 1436 -5104 1305 139 9 0 chr6 55189338 55189553 -127225689 + L1PA15 LINE L1 5945 6161 -4 308 196 0 43 chr6 55189594 55189686 -127225556 + L1MD1 LINE L1 1426 1513 -5030 * 5002 184 11 26 chr6 55189671 55191040 -127224202 + L1PA15 LINE L1 4816 6165 0 450 218 103 12 chr6 55191065 55191243 -127223999 + L1MD1 LINE L1 1424 1708 -4832 * 4330 181 31 16 chr6 55191240 55192146 -127223096 + L1MD1 LINE L1 5701 6620 -16 989 189 46 132 chr6 55192727 55193007 -127222235 + AluJo SINE Alu 27 282 -30 23 54 0 0 chr6 55193095 55193132 -127222110 + AT_rich Low_complexity Low_complexity 1 37 0 1931 142 30 7 chr6 55193255 55193558 -127221684 + AluSx SINE Alu 1 310 -2 229 229 60 36 chr6 55193663 55193746 -127221496 + L2 LINE L2 3225 3309 -4 1877 60 0 0 chr6 55194041 55194276 -127220966 - L1PA7 LINE L1 -341 5813 5579 2588 49 11 20 chr6 55194276 55194619 -127220623 + L1PA7 LINE L1 5809 6154 0 3119 199 24 3 chr6 55194755 55195423 -127219819 - L1 LINE L1 -1368 4778 4097 1019 80 0 0 chr6 55196397 55196535 -127218707 - AluY SINE Alu 0 311 174 2430 53 10 0 chr6 55196607 55196911 -127218331 + AluY SINE Alu 1 307 -4 712 246 163 0 chr6 55196930 55197133 -127218109 + MIR SINE MIR 15 250 -12 2146 59 93 17 chr6 55198511 55198800 -127216442 - AluY SINE Alu 0 311 1 323 335 51 33 chr6 55199342 55199557 -127215685 + L1MDa LINE L1 2810 3028 -3512 220 136 23 23 chr6 55199673 55199717 -127215525 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1743 198 22 25 chr6 55200574 55200932 -127214310 - MLT1A1 LTR MaLR 0 365 9 2376 92 48 53 chr6 55201188 55201567 -127213675 + MER51B LTR ERV1 1 377 0 198 208 0 0 chr6 55201669 55201717 -127213525 + T-rich Low_complexity Low_complexity 1 48 0 239 176 81 29 chr6 55204121 55204190 -127211052 + MIR SINE MIR 53 132 -76 278 281 80 68 chr6 55204681 55204887 -127210355 - MIR3 SINE MIR -9 253 48 22 35 0 0 chr6 55205521 55205550 -127209692 + AT_rich Low_complexity Low_complexity 1 29 0 2119 111 4 0 chr6 55205900 55206179 -127209063 - AluSx SINE Alu -30 282 3 310 337 62 17 chr6 55206691 55206869 -127208373 - MIR3 SINE MIR -3 205 20 1348 259 94 105 chr6 55206931 55208037 -127207205 - MER52A LTR ERV1 -3 1752 659 21 36 0 0 chr6 55208168 55208196 -127207046 + AT_rich Low_complexity Low_complexity 1 28 0 315 263 105 38 chr6 55208196 55208329 -127206913 + L1MC5 LINE L1 4757 4898 -1248 407 312 88 53 chr6 55208389 55208674 -127206568 - MLT1J LTR MaLR -7 504 210 434 343 64 32 chr6 55209171 55209669 -127205573 + L1MC5 LINE L1 5265 5778 -2030 30 0 0 0 chr6 55209677 55209707 -127205535 + AT_rich Low_complexity Low_complexity 1 30 0 3432 166 21 2 chr6 55209901 55210508 -127204734 + LTR31 LTR ERV1 1 619 0 339 85 0 0 chr6 55210866 55210913 -127204329 + (GAAAA)n Simple_repeat Simple_repeat 4 50 0 265 314 63 40 chr6 55211005 55211180 -127204062 + L2 LINE L2 1324 1502 -1812 2146 111 3 0 chr6 55211256 55211554 -127203688 + AluSp SINE Alu 1 299 -14 27 73 0 0 chr6 55211614 55211669 -127203573 + AT_rich Low_complexity Low_complexity 1 55 0 1505 242 36 90 chr6 55211669 55212532 -127202710 + L1MC5 LINE L1 6760 7575 -386 272 354 21 35 chr6 55212745 55212889 -127202353 + L2 LINE L2 3168 3309 -4 901 245 36 31 chr6 55212943 55213302 -127201940 + L1MC5 LINE L1 7553 7913 -48 514 335 56 22 chr6 55213316 55213671 -127201571 + L2 LINE L2 1705 2071 -1243 282 375 35 0 chr6 55214024 55214168 -127201074 + L2 LINE L2 3159 3307 -6 276 201 158 103 chr6 55214331 55214515 -127200727 - MER112 DNA MER1_type -1 259 66 24 32 0 0 chr6 55215481 55215512 -127199730 + AT_rich Low_complexity Low_complexity 1 31 0 4750 106 45 14 chr6 55216939 55217668 -127197574 + L1P LINE L1 11 762 -5384 3973 144 33 68 chr6 55217668 55218873 -127196369 + pTR5 LTR ERV1 6 558 -156 35734 58 3 1 chr6 55218881 55224294 -127190948 + L1PA5 LINE L1 731 6154 0 209 115 31 62 chr6 55224321 55224417 -127190825 + (TATAA)n Simple_repeat Simple_repeat 2 94 0 415 162 5 73 chr6 55224440 55224631 -127190611 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 225 200 12 38 chr6 55224752 55224832 -127190410 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 182 121 52 43 chr6 55224847 55224963 -127190279 + (TATAA)n Simple_repeat Simple_repeat 2 118 0 282 239 22 28 chr6 55224991 55225171 -127190071 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 207 170 0 0 chr6 55225172 55225219 -127190023 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 592 110 22 0 chr6 55226225 55226316 -127188926 - MER85 DNA T2_type 0 139 47 23 33 0 0 chr6 55226442 55226472 -127188770 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chr6 55227192 55227235 -127188007 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 55227480 55227505 -127187737 + AT_rich Low_complexity Low_complexity 1 25 0 4019 179 40 28 chr6 55227511 55228404 -127186838 - L1MA6 LINE L1 0 6300 5397 13552 162 28 5 chr6 55228413 55230756 -127184486 - Tigger1 DNA MER2_type 0 2418 22 3363 158 27 30 chr6 55230762 55231466 -127183776 - L1MA6 LINE L1 -765 5381 4680 1207 248 45 13 chr6 55231573 55231613 -127183629 - L1 LINE L1 -2974 3172 3135 741 117 9 0 chr6 55231613 55231724 -127183518 - L1PA10 LINE L1 0 6168 6057 1207 248 45 13 chr6 55231724 55232085 -127183157 - L1 LINE L1 -3011 3135 2754 2442 31 7 0 chr6 55233109 55233402 -127181840 + L1PA4 LINE L1 5860 6154 -1 23 0 0 0 chr6 55233688 55233711 -127181531 + AT_rich Low_complexity Low_complexity 1 23 0 29 21 0 21 chr6 55233957 55233981 -127181261 + AT_rich Low_complexity Low_complexity 1 25 -21 1730 162 4 0 chr6 55233981 55234252 -127180990 - AluSx SINE Alu -24 288 17 29 21 0 21 chr6 55234252 55234274 -127180968 + AT_rich Low_complexity Low_complexity 25 46 0 31 82 0 0 chr6 55234534 55234607 -127180635 + AT_rich Low_complexity Low_complexity 1 73 0 473 319 81 8 chr6 55234801 55235272 -127179970 + L1M4 LINE L1 2136 2640 -3506 724 333 85 19 chr6 55235336 55235879 -127179363 + MERVL LTR ERVL 2951 3531 -1954 1689 164 64 31 chr6 55235917 55236276 -127178966 + THE1C LTR MaLR 5 375 0 22 35 0 0 chr6 55236392 55236421 -127178821 + AT_rich Low_complexity Low_complexity 1 29 0 313 291 79 12 chr6 55236574 55236739 -127178503 - L1 LINE L1 -3804 2342 2167 6079 98 11 6 chr6 55236741 55237705 -127177537 + L1PA13 LINE L1 5187 6163 0 22 0 0 0 chr6 55237705 55237727 -127177515 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 55237736 55237762 -127177480 + AT_rich Low_complexity Low_complexity 1 26 0 369 311 82 22 chr6 55237773 55237956 -127177286 - LTR67 LTR ERVL -277 280 87 2102 114 0 35 chr6 55238174 55238489 -127176753 - AluSc SINE Alu -5 304 1 1502 225 177 51 chr6 55239921 55240589 -127174653 - LTR1B LTR ERV1 -74 752 1 608 314 104 25 chr6 55240594 55241027 -127174215 + L2 LINE L2 1289 1755 -1559 215 398 108 0 chr6 55241060 55241291 -127173951 + L2 LINE L2 1996 2251 -1063 251 343 103 11 chr6 55241512 55241687 -127173555 + L2 LINE L2 2289 2479 -835 222 37 0 0 chr6 55242143 55242170 -127173072 + (CA)n Simple_repeat Simple_repeat 2 28 0 364 269 28 55 chr6 55242983 55243128 -127172114 + MIR SINE MIR 68 208 -54 36 40 0 0 chr6 55244346 55244396 -127170846 + AT_rich Low_complexity Low_complexity 1 50 0 850 146 11 70 chr6 55244439 55244624 -127170618 - L1 LINE L1 -2679 3467 3294 1855 142 77 30 chr6 55244633 55244999 -127170243 + L1MA6 LINE L1 5711 6093 -207 575 293 5 0 chr6 55245015 55245203 -127170039 + L1PA16 LINE L1 6 194 -6669 * 8606 146 80 20 chr6 55245179 55247147 -127168095 + L1PA16 LINE L1 872 3130 -3732 801 221 5 16 chr6 55247148 55247338 -127167904 + L1MA6 LINE L1 6077 6264 -36 21 36 0 0 chr6 55247352 55247380 -127167862 + AT_rich Low_complexity Low_complexity 1 28 0 383 282 154 0 chr6 55248436 55248585 -127166657 + MIR SINE MIR 18 189 -73 2191 97 7 13 chr6 55250356 55250664 -127164578 - AluY SINE Alu -1 310 5 5372 147 22 4 chr6 55250889 55251854 -127163388 + L1PA16 LINE L1 5887 6866 -16 856 336 66 46 chr6 55252334 55252924 -127162318 + L1MEd LINE L1 1019 1620 -4910 356 218 57 16 chr6 55252969 55253093 -127162149 + L1MEd LINE L1 1875 2003 -4537 2602 259 48 42 chr6 55253166 55253202 -127162040 + L1MCb LINE L1 1 35 -6010 288 0 0 0 chr6 55253202 55253234 -127162008 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2602 259 48 42 chr6 55253234 55254140 -127161102 + L1MCb LINE L1 35 948 -5097 2397 263 92 29 chr6 55254197 55255469 -127159773 + L1M2a LINE L1 1469 2786 -4382 764 121 175 54 chr6 55255471 55255637 -127159605 - AluY SINE Alu -18 293 108 9451 180 66 98 chr6 55255640 55257861 -127157381 + L1MA8 LINE L1 2857 5147 -2563 1686 202 33 6 chr6 55257861 55258192 -127157050 - MER2 DNA MER2_type -5 340 1 9451 180 66 98 chr6 55258192 55259073 -127156169 + L1MA8 LINE L1 5147 6054 -1656 5054 82 135 0 chr6 55259073 55259801 -127155441 - LTR12 LTR ERV1 0 826 1 9451 180 66 98 chr6 55259801 55261367 -127153875 + L1MA8 LINE L1 6054 7709 -1 516 290 25 37 chr6 55261747 55262135 -127153107 + LTR33 LTR ERVL 49 521 0 233 253 0 27 chr6 55262711 55262786 -127152456 + T-rich Low_complexity Low_complexity 2 74 0 185 300 50 93 chr6 55264573 55264713 -127150529 + L2 LINE L2 2737 2870 -444 183 253 74 84 chr6 55264934 55265029 -127150213 + L2 LINE L2 3169 3262 -51 187 313 30 15 chr6 55265096 55265163 -127150079 + MIR3 SINE MIR 113 180 -28 5215 119 10 6 chr6 55266136 55266957 -127148285 + L1PB2 LINE L1 5327 6150 -1 381 300 81 26 chr6 55267100 55267485 -127147757 + L1MCb LINE L1 1311 1567 -4999 24 0 0 0 chr6 55267599 55267623 -127147619 + AT_rich Low_complexity Low_complexity 1 24 0 1795 123 80 52 chr6 55267987 55268352 -127146890 - THE1C LTR MaLR 0 375 1 440 279 51 30 chr6 55269105 55269302 -127145940 - L2 LINE L2 0 3313 3113 4041 216 44 41 chr6 55269833 55270500 -127144742 + L1MCc LINE L1 1 664 -5871 231 61 0 0 chr6 55270500 55270533 -127144709 + (CA)n Simple_repeat Simple_repeat 1 33 0 4041 216 44 41 chr6 55270533 55271152 -127144090 + L1MCc LINE L1 664 1651 -4884 1526 84 67 4 chr6 55271152 55271377 -127143865 - MER75B DNA T2_type -4 239 1 4041 216 44 41 chr6 55271377 55271412 -127143830 + L1MCc LINE L1 1651 1684 -4851 21 0 0 0 chr6 55271780 55271801 -127143441 + AT_rich Low_complexity Low_complexity 1 21 0 380 276 19 9 chr6 55271816 55271921 -127143321 + L1ME LINE L1 387 492 -5553 273 195 23 11 chr6 55271921 55272008 -127143234 + CT-rich Low_complexity Low_complexity 1 88 0 344 351 14 34 chr6 55272149 55272297 -127142945 - MIR SINE MIR -115 147 3 1713 276 77 16 chr6 55274394 55274566 -127140676 + MLT1F LTR MaLR 13 173 -369 495 0 0 0 chr6 55274566 55274621 -127140621 + (TC)n Simple_repeat Simple_repeat 1 55 0 1713 276 77 16 chr6 55274621 55274941 -127140301 + MLT1F LTR MaLR 173 535 -7 329 341 23 15 chr6 55275239 55275371 -127139871 + L2 LINE L2 2808 2940 -374 281 390 0 0 chr6 55275472 55275618 -127139624 + L2 LINE L2 3160 3305 -8 963 202 5 5 chr6 55275802 55275990 -127139252 - MER5A DNA MER1_type -1 188 1 22 0 0 0 chr6 55276463 55276485 -127138757 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 55276589 55276618 -127138624 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr6 55276928 55276950 -127138292 + (A)n Simple_repeat Simple_repeat 1 22 0 2402 236 41 54 chr6 55277890 55279008 -127136234 + L1ME LINE L1 3085 4188 -2376 1321 173 40 11 chr6 55279025 55279297 -127135945 - LTR4 LTR ERV1 0 596 317 259 211 53 0 chr6 55279382 55279439 -127135803 - LTR4 LTR ERV1 -239 357 298 2734 235 120 52 chr6 55279589 55279726 -127135516 + L1ME LINE L1 4204 4330 -2252 356 100 0 0 chr6 55279726 55279776 -127135466 + U5 snRNA snRNA 1 50 -66 2734 235 120 52 chr6 55279776 55281285 -127133957 + L1ME LINE L1 4330 6023 -559 1624 228 37 95 chr6 55281395 55282045 -127133197 + LTR9 LTR ERV1 1 612 0 210 352 48 0 chr6 55282107 55282212 -127133030 + MIR SINE MIR 103 212 -50 222 269 0 0 chr6 55282527 55282579 -127132663 + (TG)n Simple_repeat Simple_repeat 2 53 0 400 156 13 13 chr6 55283118 55283195 -127132047 + MER4A LTR ERV1 22 98 -566 1538 111 13 140 chr6 55283195 55283591 -127131651 + MER4A LTR ERV1 261 664 0 21 0 0 0 chr6 55284026 55284047 -127131195 + AT_rich Low_complexity Low_complexity 1 21 0 2018 149 49 3 chr6 55284231 55284579 -127130663 + THE1B LTR MaLR 1 364 0 907 223 29 86 chr6 55284743 55285169 -127130073 + LTR9B LTR ERV1 40 441 -185 203 341 88 11 chr6 55285222 55285313 -127129929 - L2 LINE L2 -26 3246 3149 381 314 76 16 chr6 55285457 55285642 -127129600 - MIR SINE MIR -48 214 19 28 79 0 0 chr6 55285801 55285864 -127129378 + AT_rich Low_complexity Low_complexity 1 63 0 1780 139 36 7 chr6 55285864 55286144 -127129098 - AluSx SINE Alu -24 288 1 1670 229 82 75 chr6 55286164 55286735 -127128507 - MLT1E1 LTR MaLR -79 575 1 415 102 17 0 chr6 55287177 55287236 -127128006 - U7 snRNA snRNA -2 61 2 24 32 0 0 chr6 55289157 55289188 -127126054 + AT_rich Low_complexity Low_complexity 1 31 0 2411 80 0 3 chr6 55289464 55289775 -127125467 + AluY SINE Alu 1 310 -1 1922 113 36 0 chr6 55290799 55291109 -127124133 - AluSx SINE Alu 0 320 1 1784 225 84 6 chr6 55291285 55291891 -127123351 + Cheshire DNA MER1_type 139 984 -1436 365 272 12 0 chr6 55291891 55291972 -127123270 - MER2 DNA MER2_type 0 345 264 2168 121 3 3 chr6 55291981 55292294 -127122948 + AluSq SINE Alu 1 313 0 12603 218 22 33 chr6 55292651 55298091 -127117151 + L1PB4 LINE L1 1408 6843 -16 486 83 14 0 chr6 55298227 55298299 -127116943 - MER2 DNA MER2_type -152 193 121 1482 190 42 10 chr6 55298312 55298601 -127116641 + AluJo SINE Alu 13 310 -2 669 233 8 0 chr6 55298614 55298747 -127116495 - MER2 DNA MER2_type -210 135 2 5592 198 58 23 chr6 55298748 55300114 -127115128 + Cheshire DNA MER1_type 983 2396 -24 728 125 75 0 chr6 55300200 55300345 -127114897 + AluSg/x SINE Alu 154 307 0 1975 181 56 34 chr6 55301335 55301383 -127113859 - MLT2A2 LTR ERVL -2 552 507 2069 128 51 25 chr6 55301383 55301736 -127113506 + THE1B LTR MaLR 3 364 0 1975 181 56 34 chr6 55301736 55302232 -127113010 - MLT2A2 LTR ERVL -47 507 1 987 299 105 51 chr6 55302988 55303734 -127111508 - ERVL LTR ERVL -2882 2772 1987 441 0 0 0 chr6 55303873 55303922 -127111320 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 275 380 35 0 chr6 55305338 55305509 -127109733 - LTR67 LTR ERVL -27 530 354 22 35 0 0 chr6 55307268 55307297 -127107945 + AT_rich Low_complexity Low_complexity 1 29 0 228 160 140 0 chr6 55307782 55307832 -127107410 + MLT1J LTR MaLR 88 144 -367 1682 152 48 45 chr6 55307832 55308206 -127107036 - THE1C LTR MaLR 0 375 1 8023 128 147 13 chr6 55308206 55309597 -127105645 - THE1C-int LTR MaLR 0 1580 4 1733 166 32 42 chr6 55309600 55309979 -127105263 - THE1C LTR MaLR 0 375 1 366 344 84 26 chr6 55310067 55310294 -127104948 + MLT1J LTR MaLR 222 461 -50 2287 91 98 33 chr6 55310562 55310800 -127104442 + L1PA13 LINE L1 5741 6017 -146 2392 84 0 7 chr6 55310800 55311108 -127104134 + AluY SINE Alu 1 306 -5 2287 91 98 33 chr6 55311108 55311266 -127103976 + L1PA13 LINE L1 6017 6163 0 2017 133 14 0 chr6 55312054 55312340 -127102902 - AluSx SINE Alu -22 290 1 617 361 28 14 chr6 55312367 55312658 -127102584 - LTR16A LTR ERVL -142 308 14 503 304 37 21 chr6 55312991 55313182 -127102060 - ERVL LTR ERVL -2153 3611 3418 241 266 63 0 chr6 55313568 55313647 -127101595 - MIR SINE MIR -10 252 169 2206 110 0 7 chr6 55314366 55314676 -127100566 - AluSg SINE Alu -2 308 1 270 318 37 28 chr6 55315318 55315535 -127099707 + L1ME4a LINE L1 5567 5785 -336 210 245 0 47 chr6 55315540 55315646 -127099596 + (TA)n Simple_repeat Simple_repeat 2 102 0 251 214 46 19 chr6 55315662 55315769 -127099473 + L1ME4a LINE L1 5811 5914 -207 27 62 0 0 chr6 55315875 55315923 -127099319 + AT_rich Low_complexity Low_complexity 1 48 0 460 316 92 77 chr6 55316072 55316266 -127098976 + L2 LINE L2 2916 3106 -207 2907 79 61 23 chr6 55316266 55316694 -127098548 + MLT2A1 LTR ERVL 1 444 0 460 316 92 77 chr6 55316694 55316891 -127098351 + L2 LINE L2 3106 3313 0 221 81 0 27 chr6 55317103 55317140 -127098102 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr6 55318680 55318702 -127096540 + AT_rich Low_complexity Low_complexity 1 22 0 2845 89 54 0 chr6 55319189 55319595 -127095647 + L1PA11 LINE L1 5747 6174 0 247 321 67 8 chr6 55320204 55320338 -127094904 + MER103 DNA DNA 21 162 -4 2295 116 0 0 chr6 55320523 55320833 -127094409 + AluSx SINE Alu 1 310 -2 600 242 146 29 chr6 55320913 55321298 -127093944 + L1ME1 LINE L1 3563 3992 -2154 1665 177 7 16 chr6 55321303 55321613 -127093629 - AluSx SINE Alu -5 307 1 522 217 0 93 chr6 55321641 55321802 -127093440 + AluJb SINE Alu 137 282 -30 492 213 47 47 chr6 55321821 55321990 -127093252 + L1ME1 LINE L1 4007 4175 -1971 2354 246 84 56 chr6 55322001 55322069 -127093173 + L1ME1 LINE L1 4596 4661 -1505 2007 143 0 10 chr6 55322069 55322369 -127092873 + AluSx SINE Alu 1 297 -15 2354 246 84 56 chr6 55322369 55322982 -127092260 + L1ME1 LINE L1 4661 5255 -911 189 0 0 0 chr6 55322982 55323003 -127092239 + (TA)n Simple_repeat Simple_repeat 1 21 0 2354 246 84 56 chr6 55323003 55323302 -127091940 + L1ME1 LINE L1 5255 5544 -622 6073 102 12 1 chr6 55323302 55323948 -127091294 - L1PA10 LINE L1 0 6168 5530 2434 71 0 7 chr6 55323948 55324258 -127090984 - AluY SINE Alu -3 308 1 6073 102 12 1 chr6 55324258 55325315 -127089927 - L1ME1 LINE L1 -638 5530 4467 2354 246 84 56 chr6 55325315 55325857 -127089385 + L1ME1 LINE L1 5544 6165 -1 2113 157 28 23 chr6 55326689 55327077 -127088165 + MLT1B LTR MaLR 1 390 0 183 129 0 0 chr6 55327699 55327730 -127087512 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 316 303 37 0 chr6 55328530 55328639 -127086603 - MIR SINE MIR -78 184 72 42726 34 22 1 chr6 55329256 55335282 -127079960 + L1PA3 LINE L1 1 6155 0 218 245 20 0 chr6 55335700 55335749 -127079493 + L2 LINE L2 3137 3186 -86 393 311 85 6 chr6 55335802 55335966 -127079276 - MIR SINE MIR -58 204 28 187 306 56 14 chr6 55336188 55336260 -127078982 + L3 LINE CR1 1482 1556 -21 2358 96 0 13 chr6 55336820 55337133 -127078109 - AluSc SINE Alu 0 309 1 2456 122 11 3 chr6 55337395 55337756 -127077486 + THE1B LTR MaLR 1 364 0 2031 148 11 42 chr6 55337903 55338262 -127076980 + MER7A DNA MER2_type 1 346 0 22 56 0 0 chr6 55338477 55338513 -127076729 + AT_rich Low_complexity Low_complexity 1 36 0 2707 96 19 28 chr6 55338810 55339237 -127076005 + L1PB1 LINE L1 5728 6150 -1 203 375 0 0 chr6 55339345 55339417 -127075825 - L2 LINE L2 -557 2757 2686 2126 110 4 0 chr6 55340112 55340423 -127074819 - AluSq SINE Alu 0 312 1 336 310 95 6 chr6 55341537 55341695 -127073547 - MIR SINE MIR -26 236 65 370 296 155 22 chr6 55344098 55344324 -127070918 + MIR SINE MIR 1 256 -6 2152 155 157 7 chr6 55344359 55344810 -127070432 + L1MC3 LINE L1 7260 7778 -7 1799 141 44 3 chr6 55344813 55345132 -127070110 + L1PA15 LINE L1 5830 6161 -4 225 314 220 26 chr6 55345422 55345613 -127069629 - MIR SINE MIR -33 229 2 216 341 12 12 chr6 55345803 55345888 -127069354 - MIR SINE MIR -3 259 175 2198 154 8 3 chr6 55345966 55346335 -127068907 - L1PB4 LINE L1 -2 6154 5784 32 0 0 0 chr6 55346335 55346367 -127068875 + AT_rich Low_complexity Low_complexity 1 32 0 4351 174 30 16 chr6 55346454 55347788 -127067454 - L1PB4 LINE L1 -377 5779 4429 802 221 58 13 chr6 55347989 55348215 -127067027 + L1MA9 LINE L1 6047 6282 -30 2172 226 91 11 chr6 55349897 55350600 -127064642 + L1M4 LINE L1 3735 4493 -1653 247 274 103 26 chr6 55350794 55350911 -127064331 + LTR67 LTR ERVL 426 551 -6 214 211 53 140 chr6 55351044 55351158 -127064084 - MIR SINE MIR -61 201 98 3849 192 33 9 chr6 55351406 55352066 -127063176 - L1MB1 LINE L1 -44 6145 5460 450 0 0 0 chr6 55352066 55352116 -127063126 + (TA)n Simple_repeat Simple_repeat 1 50 0 3849 192 33 9 chr6 55352116 55352268 -127062974 - L1MB1 LINE L1 -729 5460 5313 27 0 0 0 chr6 55352305 55352332 -127062910 + AT_rich Low_complexity Low_complexity 1 27 0 317 155 0 0 chr6 55352360 55352418 -127062824 - L1MB1 LINE L1 -869 5277 5220 900 158 7 7 chr6 55402806 55402958 -127012284 - AluY SINE Alu -159 152 1 189 0 0 0 chr6 55403409 55403430 -127011812 + (CAA)n Simple_repeat Simple_repeat 1 21 0 906 141 21 0 chr6 55403444 55403586 -127011656 + FRAM SINE Alu 12 156 -20 255 256 11 11 chr6 55403918 55404008 -127011234 + (TA)n Simple_repeat Simple_repeat 2 91 0 1795 136 26 39 chr6 55404432 55404741 -127010501 - AluSc SINE Alu -4 305 1 1027 173 0 0 chr6 55404809 55404971 -127010271 - FRAM SINE Alu -16 160 1 1909 133 0 42 chr6 55405370 55405655 -127009587 + AluSx SINE Alu 1 273 -39 326 78 0 20 chr6 55405657 55405708 -127009534 + (GGGA)n Simple_repeat Simple_repeat 3 52 0 265 50 0 0 chr6 55405808 55405848 -127009394 + AluSx SINE Alu 257 296 -4 440 209 37 98 chr6 55407003 55407166 -127008076 + L1MC5 LINE L1 7360 7512 -449 1466 183 81 14 chr6 55407623 55407742 -127007500 + AluJo SINE Alu 1 111 -201 180 0 0 0 chr6 55407742 55407762 -127007480 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1466 183 81 14 chr6 55407762 55407927 -127007315 + AluJo SINE Alu 111 304 -8 180 77 0 0 chr6 55408794 55408820 -127006422 + (TG)n Simple_repeat Simple_repeat 2 27 0 450 0 0 0 chr6 55409418 55409468 -127005774 + (TA)n Simple_repeat Simple_repeat 2 51 0 2290 78 0 0 chr6 55409627 55409908 -127005334 + AluY SINE Alu 1 281 -30 323 225 72 36 chr6 55409973 55410084 -127005158 - MIR SINE MIR -1 261 147 707 239 71 46 chr6 55410122 55410361 -127004881 + MER89 LTR ERV1 178 422 -137 2027 213 40 8 chr6 55410361 55410431 -127004811 - MER67D LTR ERV1 0 514 448 1728 167 9 38 chr6 55410431 55410749 -127004493 + AluSx SINE Alu 1 309 -3 2027 213 40 8 chr6 55410749 55410961 -127004281 - MER67D LTR ERV1 -66 448 244 207 0 0 0 chr6 55410961 55410984 -127004258 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2027 213 40 8 chr6 55410984 55411198 -127004044 - MER67D LTR ERV1 -270 244 1 585 213 0 0 chr6 55411198 55411317 -127003925 + MER89 LTR ERV1 419 537 -22 24 0 0 0 chr6 55411353 55411377 -127003865 + AT_rich Low_complexity Low_complexity 1 24 0 2222 98 7 0 chr6 55411377 55411662 -127003580 - AluSp SINE Alu -26 287 1 434 273 188 13 chr6 55412422 55412576 -127002666 - MER5A DNA MER1_type 0 189 9 570 188 0 0 chr6 55412728 55412824 -127002418 + AluJ/FLAM SINE Alu 1 96 -216 316 248 92 18 chr6 55413067 55413176 -127002066 - MIR SINE MIR -4 258 142 590 147 0 0 chr6 55413408 55413510 -127001732 - L1MA7 LINE L1 -4 6287 6186 373 205 205 32 chr6 55413709 55413899 -127001343 - L1MC5 LINE L1 -34 7927 7705 1283 196 20 0 chr6 55413937 55414187 -127001055 - MER68 LTR ERV1 0 562 308 504 176 0 0 chr6 55414188 55414273 -127000969 - AluJ/FLAM SINE Alu -227 85 1 1174 198 72 14 chr6 55414273 55414566 -127000676 - MER68 LTR ERV1 -252 310 1 515 205 90 29 chr6 55414609 55414853 -127000389 - L1MC5 LINE L1 -337 7624 7366 185 254 73 0 chr6 55415545 55415600 -126999642 + L3 LINE CR1 1181 1239 -338 2044 108 57 3 chr6 55415618 55415914 -126999328 + AluSx SINE Alu 1 312 0 183 42 0 0 chr6 55416120 55416144 -126999098 + (TTG)n Simple_repeat Simple_repeat 2 25 0 418 214 194 83 chr6 55416153 55416198 -126999044 - MER57A LTR ERV1 0 403 364 1817 146 19 13 chr6 55416198 55416506 -126998736 + AluSx SINE Alu 3 312 0 418 214 194 83 chr6 55416506 55416820 -126998422 - MER57A LTR ERV1 -39 364 4 2223 97 3 0 chr6 55417049 55417339 -126997903 + AluSg SINE Alu 1 291 -19 478 227 176 0 chr6 55418406 55418525 -126996717 - MER5A DNA MER1_type -1 188 49 210 329 25 0 chr6 55418783 55418862 -126996380 - MIR3 SINE MIR -43 165 85 22 80 0 0 chr6 55418944 55418994 -126996248 + AT_rich Low_complexity Low_complexity 1 50 0 220 338 167 29 chr6 55419554 55419764 -126995478 - MIR SINE MIR -17 245 7 1990 150 0 0 chr6 55420056 55420349 -126994893 + AluSx SINE Alu 1 293 -19 898 246 76 98 chr6 55420456 55421180 -126994062 - L2 LINE L2 -674 2640 1933 768 201 78 15 chr6 55421229 55421433 -126993809 + L1ME3A LINE L1 5879 6095 -75 272 217 0 0 chr6 55421596 55421656 -126993586 + L1ME3A LINE L1 6100 6159 -11 446 314 101 5 chr6 55421696 55421903 -126993339 + L1ME4a LINE L1 5601 5827 -294 290 262 12 0 chr6 55423271 55423355 -126991887 - L1ME LINE L1 -438 5683 5599 2306 99 0 43 chr6 55423439 55423792 -126991450 - AluSc SINE Alu 0 339 1 26 30 0 0 chr6 55424174 55424207 -126991035 + AT_rich Low_complexity Low_complexity 1 33 0 655 237 25 0 chr6 55424516 55424714 -126990528 - L1PA16 LINE L1 -5 6161 5959 2209 88 37 0 chr6 55424719 55425013 -126990229 - AluSg SINE Alu -5 305 1 594 313 50 43 chr6 55425563 55425959 -126989283 + L1MD3 LINE L1 4630 5031 -1115 1875 158 3 32 chr6 55425959 55426270 -126988972 + AluJb SINE Alu 11 312 0 594 313 50 43 chr6 55426270 55426289 -126988953 + L1MD3 LINE L1 5031 5048 -1098 1075 246 72 36 chr6 55426576 55427079 -126988163 + L1MD3 LINE L1 5283 5803 -2005 973 131 0 14 chr6 55427315 55427460 -126987782 + FLAM_C SINE Alu 1 143 0 348 286 68 50 chr6 55427470 55427655 -126987587 + L1MD3 LINE L1 6666 6873 -1169 2209 128 0 3 chr6 55427655 55427968 -126987274 + AluSx SINE Alu 1 312 0 348 286 68 50 chr6 55427968 55428122 -126987120 + L1MD3 LINE L1 6873 7023 -1019 1660 185 3 17 chr6 55428339 55428641 -126986601 - AluJb SINE Alu -14 298 1 1282 269 102 14 chr6 55428645 55429369 -126985873 + L1MC4 LINE L1 7104 7891 -151 24 53 0 0 chr6 55429432 55429470 -126985772 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr6 55429707 55429744 -126985498 + AT_rich Low_complexity Low_complexity 1 37 0 731 165 8 8 chr6 55429948 55430069 -126985173 + FLAM_C SINE Alu 1 121 -22 203 0 0 36 chr6 55430071 55430099 -126985143 + (TAA)n Simple_repeat Simple_repeat 2 28 0 223 207 0 207 chr6 55430120 55430207 -126985035 - L2 LINE L2 -38 3275 3207 662 261 97 0 chr6 55430228 55430404 -126984838 - MIR SINE MIR -36 226 34 1668 194 83 6 chr6 55430458 55430818 -126984424 + MSTD LTR MaLR 1 388 -8 242 28 0 28 chr6 55430850 55430886 -126984356 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1285 219 45 0 chr6 55431039 55431308 -126983934 + AluJo SINE Alu 1 281 -31 21 57 0 0 chr6 55431308 55431343 -126983899 + AT_rich Low_complexity Low_complexity 1 35 0 2324 109 3 0 chr6 55431345 55431649 -126983593 + AluSc SINE Alu 1 305 -4 24 0 0 0 chr6 55432116 55432140 -126983102 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 55433014 55433038 -126982204 + AT_rich Low_complexity Low_complexity 1 24 0 2099 127 0 0 chr6 55433568 55433890 -126981352 + AluSx SINE Alu 1 322 0 357 300 111 57 chr6 55434125 55434405 -126980837 - MLT1I LTR MaLR -17 392 98 329 338 22 7 chr6 55434548 55434687 -126980555 - L2 LINE L2 -1035 2279 2139 1878 162 10 0 chr6 55435001 55435297 -126979945 + AluJb SINE Alu 5 303 -9 638 199 38 54 chr6 55435488 55435796 -126979446 - MLT1B LTR MaLR -11 379 2 451 268 22 39 chr6 55436011 55436190 -126979052 + MER5B DNA MER1_type 3 178 0 1928 158 0 19 chr6 55436387 55436698 -126978544 - AluSx SINE Alu -7 305 1 259 305 51 42 chr6 55436703 55436821 -126978421 - MER5B DNA MER1_type -1 177 59 930 295 29 41 chr6 55437428 55437842 -126977400 - MER90 LTR ERV1 -17 558 150 288 328 44 38 chr6 55438801 55438957 -126976285 + MER5B DNA MER1_type 2 177 -12 2077 120 3 3 chr6 55439027 55439341 -126975901 + AluSq SINE Alu 1 314 0 553 280 77 14 chr6 55439490 55439697 -126975545 + MIR SINE MIR 30 249 -13 518 268 0 7 chr6 55439747 55439885 -126975357 - FLAM_A SINE Alu -2 140 4 1763 179 10 13 chr6 55440098 55440411 -126974831 - AluSx SINE Alu 0 312 1 470 106 14 183 chr6 55440766 55440908 -126974334 + FLAM_C SINE Alu 1 118 -15 24 0 0 0 chr6 55443000 55443024 -126972218 + AT_rich Low_complexity Low_complexity 1 24 0 254 250 42 0 chr6 55443524 55443596 -126971646 - MIR SINE MIR -117 145 71 2213 112 6 10 chr6 55443714 55444028 -126971214 - AluSp SINE Alu 0 313 1 757 218 64 36 chr6 55444440 55444660 -126970582 + MIR SINE MIR 32 257 -5 2286 74 0 7 chr6 55445182 55445480 -126969762 - AluY SINE Alu -15 296 1 272 173 0 0 chr6 55446260 55446312 -126968930 - FLAM_A SINE Alu 0 133 82 1378 64 6 0 chr6 55446312 55446485 -126968757 - AluY SINE Alu -17 294 121 1028 251 92 83 chr6 55446585 55446693 -126968549 + MER97b DNA MER1_type? 23 129 -924 2068 90 0 4 chr6 55446693 55446961 -126968281 - AluSq SINE Alu -46 267 1 1028 251 92 83 chr6 55446961 55447260 -126967982 + MER97b DNA MER1_type? 129 424 -629 2167 118 0 3 chr6 55447260 55447557 -126967685 - AluSx SINE Alu -16 296 1 1028 251 92 83 chr6 55447557 55447857 -126967385 + MER97b DNA MER1_type? 424 737 -316 953 191 0 29 chr6 55447861 55448034 -126967208 - AluJo SINE Alu -30 282 115 369 258 155 32 chr6 55448040 55448097 -126967145 + MER97b DNA MER1_type? 771 820 -233 2575 127 46 5 chr6 55448097 55448508 -126966734 + MSTA LTR MaLR 1 428 0 369 258 155 32 chr6 55448508 55448702 -126966540 + MER97b DNA MER1_type? 820 1053 0 2001 154 0 3 chr6 55448763 55449069 -126966173 - AluSx SINE Alu -7 305 1 321 87 12 86 chr6 55449071 55449143 -126966099 - AluSc SINE Alu -168 131 66 3324 105 18 10 chr6 55449192 55449688 -126965554 + Charlie3 DNA MER1_type 1 500 -2210 3024 104 17 15 chr6 55449682 55450144 -126965098 + Charlie3 DNA MER1_type 2242 2704 -6 * 528 118 20 39 chr6 55450334 55450436 -126964806 + L1MA1 LINE L1 6203 6302 0 1194 176 137 143 chr6 55450486 55451003 -126964239 + MER67D LTR ERV1 1 514 0 1829 146 0 63 chr6 55451236 55451552 -126963690 - AluSx SINE Alu -16 296 1 203 302 56 56 chr6 55452588 55452714 -126962528 - L2 LINE L2 -178 3094 2969 1636 116 5 5 chr6 55453361 55453585 -126961657 + AluSx SINE Alu 1 224 -88 387 0 0 0 chr6 55453910 55453953 -126961289 + (TG)n Simple_repeat Simple_repeat 2 44 0 356 370 61 9 chr6 55454963 55455193 -126960049 + MIR SINE MIR 20 261 -1 23 0 0 0 chr6 55455355 55455378 -126959864 + AT_rich Low_complexity Low_complexity 1 23 0 1444 151 4 62 chr6 55455482 55455741 -126959501 - AluSx SINE Alu -68 244 1 694 211 0 15 chr6 55455874 55456007 -126959235 + FLAM_A SINE Alu 1 131 -2 2150 129 6 6 chr6 55456125 55456436 -126958806 + AluSx SINE Alu 1 311 -1 596 26 26 0 chr6 55456494 55456571 -126958671 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 1830 177 0 7 chr6 55456571 55456853 -126958389 - AluJo SINE Alu -32 280 1 247 169 46 0 chr6 55457626 55457691 -126957551 + GA-rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr6 55458751 55458773 -126956469 + AT_rich Low_complexity Low_complexity 1 22 0 237 32 0 0 chr6 55459367 55459398 -126955844 + HSMAR1 DNA Mariner 1257 1287 0 874 113 84 0 chr6 55460239 55460381 -126954861 + MER39B LTR ERV1 1 154 -499 1424 136 180 0 chr6 55460433 55460661 -126954581 - AluSx SINE Alu -43 269 1 2254 130 93 0 chr6 55460701 55461132 -126954110 + MER39B LTR ERV1 183 653 0 226 111 0 37 chr6 55461952 55462006 -126953236 + (TG)n Simple_repeat Simple_repeat 1 52 0 1946 163 3 3 chr6 55462307 55462607 -126952635 + AluSp SINE Alu 5 304 -9 2411 105 18 34 chr6 55463069 55463450 -126951792 + THE1C LTR MaLR 1 375 0 1038 173 74 123 chr6 55463496 55463958 -126951284 + L1MC4 LINE L1 7592 8030 -12 3370 175 38 12 chr6 55464253 55464943 -126950299 + MER67C LTR ERV1 3 710 0 229 296 23 23 chr6 55464943 55465031 -126950211 - L2 LINE L2 -7 3265 3178 205 284 37 62 chr6 55465130 55465211 -126950031 + L2 LINE L2 3235 3313 0 2002 269 48 33 chr6 55465928 55466159 -126949083 - L1MEc LINE L1 -5533 863 637 1824 179 0 7 chr6 55466159 55466455 -126948787 - AluJb SINE Alu -18 294 1 2002 269 48 33 chr6 55466455 55467038 -126948204 - L1MEc LINE L1 -5759 637 37 216 67 0 0 chr6 55467420 55467450 -126947792 + (TG)n Simple_repeat Simple_repeat 1 30 0 485 314 119 5 chr6 55467624 55467818 -126947424 - MIR SINE MIR -44 218 3 1722 212 10 20 chr6 55468181 55468572 -126946670 - MLT1B LTR MaLR -3 387 1 254 359 26 26 chr6 55469007 55469124 -126946118 + MIR SINE MIR 8 124 -138 1907 146 0 0 chr6 55469382 55469656 -126945586 - AluSx SINE Alu -34 278 5 1744 196 6 3 chr6 55470003 55470324 -126944918 + MER21B LTR ERV1 1 322 -541 1273 178 36 64 chr6 55470337 55470618 -126944624 - AluJo SINE Alu -39 273 1 2446 172 62 33 chr6 55470631 55471149 -126944093 + MER21B LTR ERV1 330 862 -1 1577 186 99 26 chr6 55471236 55471694 -126943548 - LTR10A LTR ERV1 -61 548 1 244 255 0 78 chr6 55472066 55472168 -126943074 + GA-rich Low_complexity Low_complexity 3 96 0 678 199 19 147 chr6 55472172 55472383 -126942859 + AluJo SINE Alu 1 184 -128 2566 124 64 156 chr6 55472508 55472882 -126942360 + MER39B LTR ERV1 1 279 -374 2218 156 92 0 chr6 55472882 55473272 -126941970 + MSTB LTR MaLR 1 426 0 2566 124 64 156 chr6 55473272 55473616 -126941626 + MER39B LTR ERV1 279 653 0 26 30 0 0 chr6 55473785 55473818 -126941424 + AT_rich Low_complexity Low_complexity 1 33 0 2190 181 74 55 chr6 55473856 55474480 -126940762 - MER92B LTR ERV1 0 636 1 1941 122 45 51 chr6 55474953 55475265 -126939977 - AluSg SINE Alu 0 310 1 207 0 0 0 chr6 55475305 55475328 -126939914 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 457 254 7 14 chr6 55476434 55476572 -126938670 + L1MC4 LINE L1 6450 6586 -1456 1592 187 52 7 chr6 55476593 55476882 -126938360 - AluJo SINE Alu 0 312 11 1155 243 285 7 chr6 55477499 55477687 -126937555 + L1MC4 LINE L1 6553 6688 -1354 2188 113 7 3 chr6 55477687 55478020 -126937222 + AluSq SINE Alu 1 313 0 1155 243 285 7 chr6 55478020 55478700 -126936542 + L1MC4 LINE L1 6688 7729 -313 320 320 86 0 chr6 55478751 55478879 -126936363 - MIR SINE MIR -78 184 46 255 40 40 20 chr6 55478926 55478976 -126936266 + (TA)n Simple_repeat Simple_repeat 2 52 0 2250 106 0 0 chr6 55478976 55479269 -126935973 - AluSx SINE Alu -19 293 1 213 108 0 0 chr6 55480042 55480079 -126935163 + (TA)n Simple_repeat Simple_repeat 2 38 0 278 116 0 106 chr6 55480173 55480372 -126934870 + (TA)n Simple_repeat Simple_repeat 2 179 0 370 127 0 51 chr6 55480401 55480559 -126934683 + (TA)n Simple_repeat Simple_repeat 2 151 0 183 42 0 0 chr6 55481843 55481867 -126933375 + (TG)n Simple_repeat Simple_repeat 1 24 0 38342 65 6 0 chr6 55482666 55487870 -126927372 + L1P LINE L1 1 5233 -913 298 179 0 30 chr6 55488639 55488706 -126926536 - MER103 DNA DNA -89 77 13 5469 110 44 2 chr6 55489539 55490435 -126924807 + L1PA15 LINE L1 5221 6150 -15 1432 104 64 0 chr6 55491636 55491856 -126923386 - LTR12 LTR ERV1 -133 581 348 313 188 0 0 chr6 55491857 55491926 -126923316 - LTR30 LTR ERV1 -110 612 544 6880 123 54 21 chr6 55491926 55493259 -126921983 - pTR5 LTR ERV1 -413 2025 171 312 224 31 20 chr6 55493261 55493359 -126921883 - LTR30 LTR ERV1 -80 642 544 4367 127 42 28 chr6 55493359 55494312 -126920930 - pTR5 LTR ERV1 -413 2025 743 376 319 105 22 chr6 55494468 55494697 -126920545 - MIR SINE MIR -10 252 5 740 265 126 33 chr6 55496307 55496696 -126918546 + MLT1D LTR MaLR 81 505 0 1112 193 117 41 chr6 55496734 55497196 -126918046 + L1MC5 LINE L1 7333 7829 -132 2309 107 0 19 chr6 55497196 55497515 -126917727 + AluSq SINE Alu 1 313 0 184 256 0 0 chr6 55497515 55497554 -126917688 - L2 LINE L2 -88 3225 3187 434 238 73 40 chr6 55497605 55497756 -126917486 - MER58C DNA MER1_type -22 193 38 14097 134 12 19 chr6 55499043 55501455 -126913787 - Tigger1 DNA MER2_type 0 2418 23 288 288 140 8 chr6 55501538 55501781 -126913461 - L1MC4a LINE L1 -1903 5905 5631 2272 116 3 0 chr6 55501965 55502276 -126912966 + AluSp SINE Alu 1 312 -1 312 244 69 23 chr6 55502304 55502435 -126912807 + L1MC5 LINE L1 7781 7917 -44 458 207 86 0 chr6 55503483 55503599 -126911643 - MER90 LTR ERV1 0 614 489 628 145 28 0 chr6 55504114 55504247 -126910995 + MSTB1 LTR MaLR 1 128 -298 678 106 53 9 chr6 55504247 55504360 -126910882 + MSTB1 LTR MaLR 313 430 -2 5840 183 163 9 chr6 55504360 55505798 -126909444 + MSTB1-int LTR MaLR 3 1633 -18 1992 165 68 11 chr6 55505792 55506195 -126909047 + MSTB1 LTR MaLR 18 432 0 * 2135 103 33 0 chr6 55506216 55506516 -126908726 + AluSx SINE Alu 2 311 -1 2399 97 7 0 chr6 55507020 55507329 -126907913 + AluSx SINE Alu 1 311 -1 368 275 110 72 chr6 55507358 55507691 -126907551 + L1ME LINE L1 5256 5601 -520 541 15 29 0 chr6 55508358 55508426 -126906816 - L1PA5 LINE L1 -5 6149 6080 719 215 18 103 chr6 55508554 55508777 -126906465 - MIR SINE MIR 0 262 59 1056 113 0 38 chr6 55511449 55511609 -126903633 + AluSx SINE Alu 1 154 -158 6673 55 58 0 chr6 55511609 55512457 -126902785 - MER11D LTR ERVK 0 897 1 37217 37 4 7 chr6 55512457 55517170 -126898072 - HERVK11D LTR ERVK 0 7752 3054 6442 65 6 0 chr6 55517158 55518013 -126897229 - HERVK11D LTR ERVK -6892 860 1 * 6830 59 29 16 chr6 55518013 55518386 -126896856 - MER11D LTR ERVK 0 897 531 1993 66 0 0 chr6 55518386 55518664 -126896578 + AluY SINE Alu 41 318 0 6830 59 29 16 chr6 55518664 55519174 -126896068 - MER11D LTR ERVK -366 531 1 1020 111 15 0 chr6 55519174 55519347 -126895895 + AluSx SINE Alu 147 321 0 2537 213 68 7 chr6 55519519 55520134 -126895108 + MER82 DNA MER2_type 1 653 0 21 36 0 0 chr6 55520225 55520253 -126894989 + AT_rich Low_complexity Low_complexity 1 28 0 574 36 48 0 chr6 55520272 55520355 -126894887 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2307 80 10 26 chr6 55520362 55520673 -126894569 - AluSp SINE Alu -7 306 1 454 266 37 37 chr6 55521842 55522030 -126893212 - L2 LINE L2 -5 3308 3121 26 0 0 0 chr6 55522405 55522431 -126892811 + AT_rich Low_complexity Low_complexity 1 26 0 234 317 29 29 chr6 55522493 55522597 -126892645 - MER5A DNA MER1_type -25 164 61 1377 77 0 0 chr6 55522616 55522798 -126892444 - L1PA8 LINE L1 -1 6171 5990 448 221 23 0 chr6 55524157 55524243 -126890999 + FLAM_A SINE Alu 1 88 -54 757 217 143 33 chr6 55524500 55524744 -126890498 - L1ME3A LINE L1 -155 6015 5745 1623 147 19 26 chr6 55524890 55525156 -126890086 + AluJb SINE Alu 11 274 -38 497 202 0 0 chr6 55525158 55525257 -126889985 + AluJo/FRAM SINE Alu 208 306 -6 216 116 116 47 chr6 55525648 55525691 -126889551 - L2 LINE L2 -4 3268 3223 7269 32 2 0 chr6 55526172 55527033 -126888209 + L1PA5 LINE L1 5284 6146 -8 24 0 0 0 chr6 55527033 55527057 -126888185 + AT_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr6 55527091 55527142 -126888100 + AT_rich Low_complexity Low_complexity 1 51 0 272 244 12 23 chr6 55527219 55527305 -126887937 + HAL1 LINE L1 1385 1469 -1038 21 36 0 0 chr6 55527534 55527562 -126887680 + AT_rich Low_complexity Low_complexity 1 28 0 251 98 39 0 chr6 55528774 55528825 -126886417 + CT-rich Low_complexity Low_complexity 4 56 0 571 159 131 0 chr6 55528978 55529085 -126886157 - FLAM_C SINE Alu -12 131 11 271 304 51 0 chr6 55529879 55529958 -126885284 - L2 LINE L2 -4 3309 3227 199 254 73 0 chr6 55530176 55530231 -126885011 + L2 LINE L2 3214 3272 0 21 0 0 0 chr6 55530357 55530378 -126884864 + AT_rich Low_complexity Low_complexity 1 21 0 333 307 73 26 chr6 55530611 55530750 -126884492 - L1ME3A LINE L1 -380 5741 5589 1975 122 14 0 chr6 55530750 55531036 -126884206 - AluSx SINE Alu -22 290 1 333 307 73 26 chr6 55531036 55531088 -126884154 - L1ME3A LINE L1 -532 5589 5541 314 155 80 9 chr6 55531143 55531267 -126883975 - L1ME3A LINE L1 -690 5431 5334 2737 68 3 0 chr6 55532238 55532591 -126882651 + L1PA8 LINE L1 5802 6155 -17 597 272 12 35 chr6 55532809 55532982 -126882260 - MIR3 SINE MIR -19 189 21 740 241 22 50 chr6 55533605 55533924 -126881318 - L1MA9 LINE L1 -17 6295 5986 2219 104 0 23 chr6 55534100 55534408 -126880834 - AluSx SINE Alu -11 301 1 2299 107 0 0 chr6 55535429 55535727 -126879515 - AluSx SINE Alu -12 300 3 690 183 158 17 chr6 55536069 55536310 -126878932 - L1MD3 LINE L1 -2 7993 7719 2200 109 0 28 chr6 55536541 55536861 -126878381 - AluSq SINE Alu -2 311 1 2141 98 0 14 chr6 55537280 55537609 -126877633 - AluSg SINE Alu 0 325 1 709 188 26 0 chr6 55537747 55537884 -126877358 - FLAM_A SINE Alu 0 140 1 540 269 54 21 chr6 55538297 55538483 -126876759 + MIR SINE MIR 20 211 -51 1084 161 0 6 chr6 55538561 55538735 -126876507 + FRAM SINE Alu 1 172 -4 489 371 75 39 chr6 55539428 55539865 -126875377 + L2 LINE L2 2809 3261 -52 368 282 90 13 chr6 55540150 55540306 -126874936 + MIR SINE MIR 95 262 0 1921 208 6 6 chr6 55541162 55541527 -126873715 - MLT1A1 LTR MaLR 0 365 1 274 312 43 11 chr6 55541827 55541920 -126873322 + MIR3 SINE MIR 13 108 -100 181 330 77 11 chr6 55542151 55542242 -126873000 + L2 LINE L2 3126 3222 -91 395 266 38 18 chr6 55542481 55542615 -126872627 + MIR SINE MIR 32 172 -66 2043 110 13 32 chr6 55542881 55543190 -126872052 - AluSx SINE Alu -9 303 1 377 267 216 48 chr6 55543551 55543866 -126871376 + LTR16A LTR ERVL 14 381 -69 210 205 154 26 chr6 55544124 55544202 -126871040 + MIR3 SINE MIR 108 195 -13 * 283 216 68 14 chr6 55544199 55544273 -126870969 - MIR SINE MIR -108 154 77 2018 123 24 68 chr6 55544416 55544576 -126870666 + THE1B LTR MaLR 1 167 -197 1985 124 21 3 chr6 55544576 55544867 -126870375 - AluSg SINE Alu -13 297 2 2018 123 24 68 chr6 55544867 55545087 -126870155 + THE1B LTR MaLR 167 364 0 2560 29 0 10 chr6 55545190 55545497 -126869745 - AluY SINE Alu -7 304 1 831 260 14 18 chr6 55545921 55546140 -126869102 + MER20 DNA MER1_type 1 218 -1 30 27 0 0 chr6 55546536 55546573 -126868669 + AT_rich Low_complexity Low_complexity 1 37 0 2238 90 3 7 chr6 55546573 55546863 -126868379 - AluSx SINE Alu -22 290 2 259 163 363 0 chr6 55546951 55547031 -126868211 + MIR SINE MIR 74 182 -80 185 212 136 61 chr6 55547018 55547084 -126868158 + L2 LINE L2 3200 3270 -43 * 570 265 71 51 chr6 55547616 55547869 -126867373 + MIR SINE MIR 5 262 0 255 61 0 0 chr6 55547951 55547984 -126867258 + (CACCAT)n Simple_repeat Simple_repeat 6 38 0 2497 129 0 0 chr6 55548097 55548461 -126866781 - THE1B LTR MaLR 0 364 1 9336 128 65 9 chr6 55548461 55549958 -126865284 - THE1B-int LTR MaLR 0 1580 1 2630 94 17 6 chr6 55549958 55550318 -126864924 - THE1B LTR MaLR 0 364 1 243 0 0 0 chr6 55550495 55550522 -126864720 + (CA)n Simple_repeat Simple_repeat 2 28 0 1448 146 71 21 chr6 55550534 55550774 -126864468 - AluJo SINE Alu -30 282 31 6108 138 96 96 chr6 55550777 55552472 -126862770 - pTR5 LTR ERV1 0 2438 743 2039 258 112 18 chr6 55553077 55554108 -126861134 - L1MC4 LINE L1 -206 7836 6709 510 214 40 24 chr6 55554368 55554494 -126860748 + Charlie1a DNA MER1_type 1 128 -1327 * 2041 238 34 24 chr6 55554490 55555087 -126860155 + Charlie1a DNA MER1_type 331 933 -522 205 299 103 0 chr6 55555593 55555690 -126859552 + L2 LINE L2 3151 3257 -15 483 181 75 0 chr6 55556038 55556132 -126859110 - MER105 DNA DNA -103 101 1 231 310 0 0 chr6 55556264 55556322 -126858920 + L2 LINE L2 3136 3193 -79 1695 185 6 14 chr6 55556350 55556696 -126858546 - L1MA4A LINE L1 -11 6292 5950 1749 120 34 24 chr6 55556698 55556989 -126858253 + L1M2 LINE L1 5513 5806 -494 761 160 40 7 chr6 55557160 55557310 -126857932 - L1MA9 LINE L1 -6 6306 6152 258 116 0 0 chr6 55557316 55557359 -126857883 + (TG)n Simple_repeat Simple_repeat 2 44 0 362 202 56 0 chr6 55557399 55557488 -126857754 - L1MA9 LINE L1 -173 6139 6046 192 77 0 0 chr6 55557827 55557853 -126857389 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 27 29 0 0 chr6 55558194 55558228 -126857014 + AT_rich Low_complexity Low_complexity 1 34 0 227 349 0 0 chr6 55559464 55559527 -126855715 - L2 LINE L2 -5 3267 3205 316 305 68 78 chr6 55561102 55561423 -126853819 + L2 LINE L2 2996 3313 0 25 31 0 0 chr6 55561501 55561533 -126853709 + AT_rich Low_complexity Low_complexity 1 32 0 196 231 148 74 chr6 55562008 55562116 -126853126 + MIR SINE MIR 35 150 -112 2244 100 0 0 chr6 55562381 55562670 -126852572 - AluSx SINE Alu -23 289 1 1471 199 95 45 chr6 55563133 55563616 -126851626 - Charlie4a DNA MER1_type -1 507 1 341 301 53 45 chr6 55563928 55564061 -126851181 - MIR SINE MIR -128 134 1 23 0 0 0 chr6 55564077 55564100 -126851142 + AT_rich Low_complexity Low_complexity 1 23 0 2375 66 7 0 chr6 55564247 55564548 -126850694 + AluY SINE Alu 1 303 -8 283 209 11 44 chr6 55564846 55564937 -126850305 + (TATATG)n Simple_repeat Simple_repeat 5 92 0 2103 94 0 36 chr6 55565285 55565620 -126849622 + AluSc SINE Alu 1 309 0 694 134 8 8 chr6 55565865 55565992 -126849250 - L1MB8 LINE L1 -6 6172 6046 2989 125 0 5 chr6 55566061 55566510 -126848732 - L1PA15 LINE L1 -1 6164 5718 2944 222 42 8 chr6 55566510 55567245 -126847997 - L1MB7 LINE L1 -110 6074 5315 1458 195 40 4 chr6 55567622 55567899 -126847343 + AluJb SINE Alu 1 287 -25 2367 212 60 2 chr6 55567968 55568486 -126846756 - L1MD3 LINE L1 0 7995 7448 227 346 53 80 chr6 55568997 55569185 -126846057 - MIR SINE MIR -48 214 32 400 337 49 37 chr6 55569724 55569970 -126845272 + MIR SINE MIR 2 250 -12 333 47 0 0 chr6 55572140 55572183 -126843059 + (CAA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr6 55572329 55572351 -126842891 + AT_rich Low_complexity Low_complexity 1 22 0 341 173 0 13 chr6 55572585 55572660 -126842582 + GA-rich Low_complexity Low_complexity 3 76 0 836 218 18 0 chr6 55574350 55574520 -126840722 - MER2 DNA MER2_type -172 173 1 233 264 0 19 chr6 55574832 55574885 -126840357 - Charlie4 DNA MER1_type 0 1961 1910 606 314 54 21 chr6 55575356 55575595 -126839647 - MIR SINE MIR -13 249 3 513 188 21 8 chr6 55576358 55576592 -126838650 + CT-rich Low_complexity Low_complexity 1 237 0 2076 175 24 0 chr6 55576621 55577004 -126838238 - L1MA9 LINE L1 -148 6164 5773 346 337 111 17 chr6 55577881 55578053 -126837189 + MER5A DNA MER1_type 1 188 -1 411 198 228 0 chr6 55578366 55578465 -126836777 - MER105 DNA DNA -37 167 46 685 180 8 0 chr6 55578465 55578587 -126836655 - Charlie1 DNA MER1_type 0 2761 2639 182 150 25 0 chr6 55578667 55578707 -126836535 + (TA)n Simple_repeat Simple_repeat 1 41 0 218 383 70 17 chr6 55579238 55579353 -126835889 + MIR3 SINE MIR 37 157 -51 3766 128 34 49 chr6 55580406 55581078 -126834164 - L1PA16 LINE L1 -180 5986 5325 1810 180 0 0 chr6 55581465 55581776 -126833466 + AluJb SINE Alu 2 312 0 5889 213 33 34 chr6 55581870 55582726 -126832516 + L1MB3 LINE L1 3646 4502 -1681 2460 206 19 9 chr6 55582726 55583191 -126832051 + MER70A LTR ERVL 3 472 0 5889 213 33 34 chr6 55583191 55584875 -126830367 + L1MB3 LINE L1 4502 6179 -4 226 26 0 26 chr6 55585557 55585596 -126829646 + L1P LINE L1 3855 3892 -2254 2016 66 0 0 chr6 55586035 55586294 -126828948 - L1PA7 LINE L1 -3 6151 5893 2887 67 3 0 chr6 55586294 55586669 -126828573 + L1PA7 LINE L1 5508 5883 -271 21 0 0 0 chr6 55586984 55587005 -126828237 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr6 55587200 55587229 -126828013 + AT_rich Low_complexity Low_complexity 1 29 0 185 356 0 39 chr6 55588045 55588149 -126827093 + MIR SINE MIR 55 154 -108 515 291 109 49 chr6 55589092 55589587 -126825655 - L2 LINE L2 0 3313 2791 352 369 151 3 chr6 55590219 55590571 -126824671 + L2 LINE L2 2236 2639 -675 329 399 32 32 chr6 55590949 55591137 -126824105 + L2 LINE L2 3075 3262 -10 189 261 0 0 chr6 55591521 55591567 -126823675 - MIR SINE MIR -55 153 108 1513 320 44 25 chr6 55591906 55592803 -126822439 + L2 LINE L2 2384 3294 -19 16293 75 5 0 chr6 55592873 55595844 -126819398 + L1PA6 LINE L1 3169 6154 0 22 0 0 0 chr6 55596026 55596048 -126819194 + AT_rich Low_complexity Low_complexity 1 22 0 1486 182 47 60 chr6 55597067 55597447 -126817795 + THE1C LTR MaLR 1 375 0 1547 183 0 32 chr6 55598240 55598524 -126816718 - AluJb SINE Alu -7 305 31 182 371 0 10 chr6 55598553 55598650 -126816592 - L3 LINE CR1 -848 729 634 2097 256 37 11 chr6 55598944 55599487 -126815755 - LTR26 LTR ERV1 0 603 47 225 111 0 28 chr6 55599501 55599537 -126815705 + tRNA-Gly-GGG tRNA tRNA 1 35 -39 500 345 98 16 chr6 55601300 55601688 -126813554 - L3 LINE CR1 -394 1183 764 265 156 67 0 chr6 55601997 55602042 -126813200 - MER5A DNA MER1_type -47 142 95 2043 131 0 14 chr6 55602049 55602365 -126812877 - AluSx SINE Alu 0 312 1 6325 84 15 6 chr6 55602366 55603769 -126811473 - L1PA13 LINE L1 -12 6151 4741 21 0 0 0 chr6 55603974 55603995 -126811247 + AT_rich Low_complexity Low_complexity 1 21 0 511 229 0 0 chr6 55604090 55604186 -126811056 - FLAM_A SINE Alu -46 96 1 413 285 212 0 chr6 55604580 55604745 -126810497 + L2 LINE L2 2168 2367 -947 990 65 35 12 chr6 55604828 55604921 -126810321 + (TTTC)n Simple_repeat Simple_repeat 1 268 0 990 65 35 12 chr6 55604921 55605090 -126810152 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 1978 132 4 0 chr6 55605238 55605560 -126809682 + AluSq SINE Alu 3 325 0 252 291 0 13 chr6 55605574 55605653 -126809589 - L1ME3 LINE L1 -24 6138 6061 2201 100 30 0 chr6 55605752 55606053 -126809189 + AluSg SINE Alu 1 310 0 261 0 0 0 chr6 55606054 55606083 -126809159 + (TA)n Simple_repeat Simple_repeat 2 30 0 380 333 100 33 chr6 55606331 55606504 -126808738 + MIR SINE MIR 12 203 -59 1835 175 9 26 chr6 55606504 55606852 -126808390 + MER2 DNA MER2_type 2 343 -1 380 333 100 33 chr6 55606852 55606888 -126808354 + MIR SINE MIR 203 235 -27 198 302 93 12 chr6 55607703 55607789 -126807453 + L2 LINE L2 3165 3257 -56 2684 238 69 52 chr6 55607800 55608819 -126806423 - L1MC4a LINE L1 -1205 6603 5568 5739 50 1 3 chr6 55608835 55609549 -126805693 + L1PA4 LINE L1 5417 6129 -26 1850 142 9 22 chr6 55611212 55611528 -126803714 - AluSq SINE Alu -1 312 1 222 288 17 0 chr6 55611816 55611875 -126803367 - MIR SINE MIR -1 261 202 22 35 0 0 chr6 55611941 55611970 -126803272 + AT_rich Low_complexity Low_complexity 1 29 0 860 250 34 34 chr6 55613855 55614207 -126801035 - L1M4 LINE L1 -2352 5213 4862 550 98 5 31 chr6 55615380 55615489 -126799753 - L1PA16 LINE L1 -336 5818 5728 407 235 265 0 chr6 55615613 55615775 -126799467 - MER3 DNA MER1_type 0 209 5 249 313 0 0 chr6 55615863 55615927 -126799315 + L2 LINE L2 2299 2362 -952 1949 210 59 9 chr6 55616007 55616464 -126798778 - L1M4 LINE L1 -5118 2447 1968 614 287 113 54 chr6 55616538 55616996 -126798246 - L1M4 LINE L1 -6508 981 209 1847 94 12 0 chr6 55617092 55617348 -126797894 - AluSg SINE Alu -8 302 44 212 179 0 0 chr6 55618942 55618981 -126796261 + A-rich Low_complexity Low_complexity 1 39 0 181 0 69 0 chr6 55619756 55619785 -126795457 + (TG)n Simple_repeat Simple_repeat 2 32 0 35 54 0 0 chr6 55621582 55621638 -126793604 + AT_rich Low_complexity Low_complexity 1 56 0 235 411 16 8 chr6 55621774 55621898 -126793344 + MIR SINE MIR 16 140 -68 21 57 0 0 chr6 55623264 55623299 -126791943 + AT_rich Low_complexity Low_complexity 1 35 0 2437 88 0 33 chr6 55623506 55623870 -126791372 - L1PB1 LINE L1 -18 6133 5782 245 218 35 69 chr6 55623870 55623957 -126791285 - L1MC4 LINE L1 -1344 6698 6615 586 138 55 5 chr6 55623970 55624191 -126791051 + (TA)n Simple_repeat Simple_repeat 1 232 0 474 123 35 24 chr6 55624202 55624372 -126790870 + (TTATA)n Simple_repeat Simple_repeat 3 174 0 * 655 129 41 6 chr6 55624361 55624531 -126790711 + (TA)n Simple_repeat Simple_repeat 1 176 0 4300 172 19 18 chr6 55624531 55626025 -126789217 - L1P5 LINE L1 -360 6507 5022 15340 119 42 4 chr6 55626025 55628427 -126786815 - L1P5 LINE L1 -4371 2492 1 742 195 54 36 chr6 55630631 55630663 -126784579 - MER33 DNA MER1_type -2347 238 208 1284 244 67 31 chr6 55630663 55631114 -126784128 + MLT1C LTR MaLR 1 467 0 742 195 54 36 chr6 55631114 55631302 -126783940 - MER33 DNA MER1_type -2377 208 14 211 386 39 16 chr6 55632660 55632787 -126782455 - MIR SINE MIR -108 154 25 1622 163 0 60 chr6 55633204 55633548 -126781694 + AluJo SINE Alu 1 326 0 341 312 32 0 chr6 55637286 55637379 -126777863 + L2 LINE L2 3177 3272 0 5675 139 105 49 chr6 55638111 55638861 -126776381 + MER51A-int LTR ERV1 6619 7455 -361 189 0 0 0 chr6 55638861 55638882 -126776360 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 5675 139 105 49 chr6 55638882 55639266 -126775976 + MER51A-int LTR ERV1 7455 7816 0 313 134 194 0 chr6 55639268 55639335 -126775907 + MER51A LTR ERV1 1 80 -554 1113 173 55 10 chr6 55639337 55639539 -126775703 + MER50 LTR ERV1 287 497 -237 3053 105 5 0 chr6 55639546 55639974 -126775268 - MER41A LTR ERV1 -124 430 1 13767 125 32 18 chr6 55639974 55642696 -126772546 - MER41A-int LTR ERV1 -2 5944 2954 1816 143 3 53 chr6 55642696 55643018 -126772224 - AluY SINE Alu -5 306 1 13767 125 32 18 chr6 55643018 55643799 -126771443 - MER41A-int LTR ERV1 -2992 2954 2186 4083 137 16 5 chr6 55643775 55644403 -126770839 - MER41A-int LTR ERV1 -5311 635 1 * 4092 83 5 0 chr6 55644403 55644954 -126770288 - MER41A LTR ERV1 0 554 1 1477 124 0 5 chr6 55644954 55645171 -126770071 + MER50 LTR ERV1 492 707 -27 316 190 101 0 chr6 55645565 55645644 -126769598 - L1MCa LINE L1 -4863 1563 1477 * 773 217 45 153 chr6 55645637 55645816 -126769426 - L1M4 LINE L1 -1840 4306 4109 3420 132 55 12 chr6 55645816 55646401 -126768841 + MER4B LTR ERV1 1 610 0 773 217 45 153 chr6 55646401 55646509 -126768733 - L1M4 LINE L1 -2037 4109 3991 7493 29 7 0 chr6 55646509 55647660 -126767582 + L1PA4 LINE L1 4999 6155 0 773 217 45 153 chr6 55647660 55647882 -126767360 - L1M4 LINE L1 -2155 3991 3851 180 152 0 0 chr6 55647882 55647915 -126767327 + (TA)n Simple_repeat Simple_repeat 1 33 0 2444 68 0 3 chr6 55647959 55648270 -126766972 - AluY SINE Alu -1 310 1 437 364 156 7 chr6 55648271 55648612 -126766630 + L2 LINE L2 2617 3005 -308 257 272 22 33 chr6 55648631 55648723 -126766519 + L2 LINE L2 2701 2791 -523 659 265 37 85 chr6 55648731 55649025 -126766217 + L2 LINE L2 3034 3313 0 354 406 101 3 chr6 55649036 55649413 -126765829 - L2 LINE L2 -174 3139 2728 2249 189 89 34 chr6 55649738 55650299 -126764943 - L1MD3 LINE L1 0 7995 7404 272 267 22 22 chr6 55650299 55650389 -126764853 - MLT1F1 LTR MaLR -442 125 36 318 315 105 27 chr6 55650432 55650727 -126764515 - L2 LINE L2 -1299 2015 1698 663 191 67 96 chr6 55651506 55651715 -126763527 - MER3 DNA MER1_type 0 209 7 202 319 82 115 chr6 55651818 55652295 -126762947 + L2 LINE L2 2292 2752 -562 1796 146 0 4 chr6 55653118 55653393 -126761849 + AluSx SINE Alu 1 274 -38 25 65 0 0 chr6 55653701 55653747 -126761495 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr6 55654045 55654068 -126761174 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr6 55657409 55657442 -126757800 + AT_rich Low_complexity Low_complexity 1 33 0 289 183 33 0 chr6 55659467 55659527 -126755715 + MER3 DNA MER1_type 148 209 0 259 182 18 0 chr6 55659482 55659537 -126755705 - MER3 DNA MER1_type -117 92 37 * 314 330 140 21 chr6 55660034 55660270 -126754972 + LTR33 LTR ERVL 258 521 0 307 298 39 34 chr6 55660497 55660702 -126754540 + L1ME LINE L1 5583 5788 -333 257 237 17 0 chr6 55661495 55661554 -126753688 + MLT1A2 LTR MaLR 31 90 -284 368 71 18 0 chr6 55662923 55662979 -126752263 + (TG)n Simple_repeat Simple_repeat 2 58 0 2387 69 23 0 chr6 55663179 55663531 -126751711 + AluY SINE Alu 1 359 0 462 298 96 40 chr6 55663776 55664181 -126751061 + L1M4 LINE L1 3726 4158 -1988 200 35 35 0 chr6 55664181 55664210 -126751032 + (TA)n Simple_repeat Simple_repeat 1 30 0 462 298 96 40 chr6 55664210 55664230 -126751012 + L1M4 LINE L1 4158 4175 -1971 44 0 0 0 chr6 55664237 55664281 -126750961 + AT_rich Low_complexity Low_complexity 1 44 0 480 330 168 32 chr6 55664288 55664713 -126750529 + L1M4 LINE L1 4178 4705 -1441 2188 127 0 0 chr6 55664713 55665021 -126750221 + AluSx SINE Alu 5 312 0 480 330 168 32 chr6 55665021 55665180 -126750062 + L1M4 LINE L1 4705 4841 -1305 32 0 0 0 chr6 55668110 55668142 -126747100 + AT_rich Low_complexity Low_complexity 1 32 0 1505 204 14 10 chr6 55668146 55668435 -126746807 - AluJo SINE Alu -17 295 6 201 251 49 110 chr6 55669583 55669746 -126745496 + MIR SINE MIR 108 260 -2 207 171 0 0 chr6 55670313 55670348 -126744894 + (CA)n Simple_repeat Simple_repeat 2 36 0 445 245 74 18 chr6 55670359 55670522 -126744720 - LTR16A1 LTR ERVL -2 455 284 355 291 45 15 chr6 55670605 55670739 -126744503 - LTR16A1 LTR ERVL -319 138 1 243 281 134 0 chr6 55671013 55671095 -126744147 + MIR SINE MIR 120 212 -50 3017 169 31 86 chr6 55671403 55671463 -126743779 - L1MA8 LINE L1 -3 6288 6226 790 198 123 5 chr6 55671463 55671650 -126743592 - MER6B DNA MER2_type -1 209 1 3017 169 31 86 chr6 55671650 55672384 -126742858 - L1MA8 LINE L1 -65 6226 5537 267 79 0 0 chr6 55672708 55672746 -126742496 - L1PA15 LINE L1 -7 6158 6121 * 16159 224 29 48 chr6 55672743 55674109 -126741133 - L1PA12 LINE L1 -1034 6550 5160 256 24 49 0 chr6 55674109 55674150 -126741092 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2101 114 0 0 chr6 55674155 55674426 -126740816 - AluSg SINE Alu -39 271 1 16159 224 29 48 chr6 55674426 55676347 -126738895 - L1PA12 LINE L1 -2428 5156 3201 2025 136 7 0 chr6 55676347 55676634 -126738608 + AluSc SINE Alu 1 289 -20 16159 224 29 48 chr6 55676634 55677164 -126738078 - L1PA12 LINE L1 -4383 3201 2663 667 120 0 0 chr6 55677164 55677256 -126737986 - AluS SINE Alu -218 94 3 16159 224 29 48 chr6 55677256 55677424 -126737818 - L1PA12 LINE L1 -4921 2663 2493 2094 147 0 0 chr6 55677424 55677723 -126737519 + AluSx SINE Alu 1 299 -13 16159 224 29 48 chr6 55677723 55677798 -126737444 - L1PA12 LINE L1 -5091 2493 2418 501 17 0 0 chr6 55677798 55677856 -126737386 + (TG)n Simple_repeat Simple_repeat 1 58 0 16159 224 29 48 chr6 55677856 55680622 -126734620 - L1PA12 LINE L1 -5166 2418 12 198 0 0 0 chr6 55680997 55681019 -126734223 + (TG)n Simple_repeat Simple_repeat 1 22 0 338 259 69 21 chr6 55682498 55682668 -126732574 - MLT1G LTR MaLR -45 550 280 669 219 34 14 chr6 55682680 55682826 -126732416 - MLT1G LTR MaLR -432 158 10 198 0 0 0 chr6 55682852 55682874 -126732368 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1942 234 157 2 chr6 55683388 55683867 -126731375 - MSTB1-int LTR MaLR -157 1494 942 1791 214 16 8 chr6 55683851 55684239 -126731003 - MSTB1-int LTR MaLR -1254 397 7 * 1822 192 74 17 chr6 55684243 55684650 -126730592 - MSTB1 LTR MaLR -2 430 1 1226 117 0 0 chr6 55684650 55684830 -126730412 - Tigger5 DNA MER2_type -84 2239 2060 1142 212 28 0 chr6 55684821 55685033 -126730209 - Tigger5 DNA MER2_type -2105 218 1 * 231 88 0 0 chr6 55685198 55685232 -126730010 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 326 308 9 47 chr6 55685232 55685339 -126729903 + MER5A DNA MER1_type 84 186 -3 351 0 0 0 chr6 55685457 55685496 -126729746 + (TA)n Simple_repeat Simple_repeat 1 39 0 32 43 0 0 chr6 55685926 55685972 -126729270 + AT_rich Low_complexity Low_complexity 1 46 0 7525 12 0 0 chr6 55687858 55688710 -126726532 - L1PA2 LINE L1 0 6155 5304 1542 22 0 0 chr6 55688709 55688889 -126726353 + L1P LINE L1 4908 5087 -1059 * 302 257 19 179 chr6 55689264 55689521 -126725721 + L2 LINE L2 2847 3062 -251 264 299 179 15 chr6 55689703 55689837 -126725405 - MIR SINE MIR -50 212 57 309 303 85 24 chr6 55690054 55690139 -126725103 + MIR SINE MIR 61 139 -123 511 101 13 0 chr6 55690139 55690218 -126725024 - MADE1 DNA Mariner 0 80 1 309 303 85 24 chr6 55690218 55690297 -126724945 + MIR SINE MIR 139 235 -27 203 189 0 0 chr6 55690318 55690355 -126724887 + (TTA)n Simple_repeat Simple_repeat 2 38 0 307 245 0 59 chr6 55691171 55691273 -126723969 - MER20B DNA MER1_type -1 782 687 300 27 0 0 chr6 55691414 55691451 -126723791 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 80 0 0 chr6 55691908 55691958 -126723284 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 55691995 55692020 -126723222 + AT_rich Low_complexity Low_complexity 1 25 0 277 263 34 25 chr6 55692020 55692138 -126723104 - MER20B DNA MER1_type -146 637 519 213 235 0 29 chr6 55693510 55693578 -126721664 + T-rich Low_complexity Low_complexity 3 68 0 4239 30 0 0 chr6 55693579 55694079 -126721163 - L1PA4 LINE L1 -2 6153 5654 1867 158 19 65 chr6 55694579 55695010 -126720232 - LTR19A LTR ERV1 -75 411 1 1346 270 144 50 chr6 55695290 55695991 -126719251 + Charlie2b DNA MER1_type 203 969 -1813 292 258 125 8 chr6 55696540 55696660 -126718582 + MIR SINE MIR 129 262 0 755 226 122 85 chr6 55697415 55697791 -126717451 - MER57A LTR ERV1 0 403 14 571 266 196 50 chr6 55698482 55698906 -126716336 + LTR33 LTR ERVL 4 489 -32 228 214 204 51 chr6 55698909 55699007 -126716235 - MER81 DNA DNA 0 114 2 24 0 0 0 chr6 55699237 55699261 -126715981 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 55699498 55699527 -126715715 + AT_rich Low_complexity Low_complexity 1 29 0 277 269 75 0 chr6 55700010 55700077 -126715165 - L2 LINE L2 -32 3240 3169 412 312 64 6 chr6 55700864 55701021 -126714221 - MIR3 SINE MIR -7 201 36 559 265 54 0 chr6 55701059 55701206 -126714036 - MER5A DNA MER1_type -28 161 7 24 32 0 0 chr6 55701437 55701468 -126713774 + AT_rich Low_complexity Low_complexity 1 31 0 184 222 28 0 chr6 55702729 55702801 -126712441 + (CATA)n Simple_repeat Simple_repeat 2 75 0 3342 89 30 162 chr6 55702820 55703592 -126711650 - Tigger3(Golem) DNA MER2_type -83 2946 2277 556 250 0 0 chr6 55703583 55703691 -126711551 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 258 356 43 18 chr6 55704132 55704295 -126710947 + MLT1J1 LTR MaLR 70 236 -210 807 278 28 0 chr6 55704499 55704711 -126710531 - MER20B DNA MER1_type 0 219 2 2074 122 3 0 chr6 55705340 55705627 -126709615 + AluSx SINE Alu 14 301 -11 1836 174 0 3 chr6 55705850 55706144 -126709098 + AluSx SINE Alu 11 303 -9 192 77 0 0 chr6 55706663 55706689 -126708553 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 306 256 39 62 chr6 55706732 55706861 -126708381 + MLT1J LTR MaLR 3 128 -383 774 263 165 37 chr6 55710014 55710421 -126704821 + Charlie2b DNA MER1_type 224 682 -2100 406 226 75 50 chr6 55710486 55710685 -126704557 + Charlie2a DNA MER1_type 1467 1670 -1192 669 196 56 0 chr6 55710685 55710828 -126704414 + L1M4 LINE L1 5466 5616 -568 3020 262 48 44 chr6 55710849 55711962 -126703280 + L1MC3 LINE L1 5500 6620 -1165 2108 234 75 20 chr6 55711962 55712552 -126702690 - MLT1E2 LTR MaLR 0 626 5 3020 262 48 44 chr6 55712552 55712620 -126702622 + L1MC3 LINE L1 6620 6686 -1099 362 238 0 40 chr6 55712622 55712723 -126702519 + L1MC3 LINE L1 7032 7128 -657 225 0 0 0 chr6 55713837 55713862 -126701380 + (TTA)n Simple_repeat Simple_repeat 3 27 0 42547 36 22 1 chr6 55713862 55719871 -126695371 - L1PA3 LINE L1 -18 6137 2 24 0 0 0 chr6 55720371 55720395 -126694847 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr6 55720511 55720542 -126694700 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr6 55720799 55720826 -126694416 + AT_rich Low_complexity Low_complexity 1 27 0 242 238 7 28 chr6 55721560 55721703 -126693539 + A-rich Low_complexity Low_complexity 4 143 0 902 76 21 35 chr6 55722760 55722904 -126692338 + L1MA1 LINE L1 6087 6228 -74 979 71 0 0 chr6 55722904 55723028 -126692214 + L1MA1 LINE L1 6176 6302 0 21 0 0 0 chr6 55723194 55723215 -126692027 + AT_rich Low_complexity Low_complexity 1 21 0 712 72 65 51 chr6 55723398 55723467 -126691775 + THE1A-int LTR MaLR 1440 1507 -73 1885 134 11 3 chr6 55723467 55723775 -126691467 + AluSx SINE Alu 1 310 0 712 72 65 51 chr6 55723775 55723842 -126691400 + THE1A-int LTR MaLR 1507 1579 -1 2604 91 6 0 chr6 55723843 55724196 -126691046 + THE1A LTR MaLR 1 355 0 255 174 0 0 chr6 55724219 55724265 -126690977 + HsTC2 DNA Tc2 29 74 -1824 29 0 0 0 chr6 55724575 55724604 -126690638 + AT_rich Low_complexity Low_complexity 1 29 0 2131 129 3 3 chr6 55724681 55725007 -126690235 - L1PA15 LINE L1 -6 6159 5834 1390 165 28 0 chr6 55725007 55725256 -126689986 + L1PA15-16 LINE L1 2430 2685 -4164 2436 80 0 0 chr6 55725366 55725665 -126689577 + AluY SINE Alu 1 299 -12 2629 96 3 6 chr6 55726172 55726537 -126688705 + THE1B LTR MaLR 1 364 0 2031 123 0 0 chr6 55726603 55726904 -126688338 - Tigger1 DNA MER2_type -891 1527 1227 2348 86 0 0 chr6 55726904 55727196 -126688046 + AluSg SINE Alu 1 292 -18 9254 220 22 46 chr6 55727200 55727932 -126687310 + L1PA11 LINE L1 6 754 -5707 2133 119 7 0 chr6 55727932 55728227 -126687015 - AluSg SINE Alu -13 297 1 9254 220 22 46 chr6 55728227 55730752 -126684490 + L1PA11 LINE L1 754 3210 -3251 1176 142 0 16 chr6 55730736 55730919 -126684323 - THE1-int LTR MaLR -286 1294 1115 * 1073 153 23 6 chr6 55730919 55731095 -126684147 + THE1B LTR MaLR 185 363 -1 8143 148 7 2 chr6 55731095 55733271 -126681971 + L1PA11 LINE L1 4297 6488 -1 6805 149 25 34 chr6 55733271 55733550 -126681692 - Tigger1 DNA MER2_type -1185 1233 953 1093 179 22 9 chr6 55733550 55733774 -126681468 + L1PA16 LINE L1 5940 6166 0 6805 149 25 34 chr6 55733774 55733809 -126681433 - Tigger1 DNA MER2_type -1465 953 919 1809 193 0 0 chr6 55733809 55734110 -126681132 - AluSx SINE Alu -11 301 1 6805 149 25 34 chr6 55734110 55735038 -126680204 - Tigger1 DNA MER2_type -1499 919 1 2039 159 24 83 chr6 55735038 55735541 -126679701 + L1MB3 LINE L1 5682 6154 -29 1926 219 43 35 chr6 55735673 55736208 -126679034 - MER67A LTR ERV1 0 543 5 26 30 0 0 chr6 55737939 55737972 -126677270 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr6 55738519 55738545 -126676697 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr6 55738903 55738928 -126676314 + AT_rich Low_complexity Low_complexity 1 25 0 402 244 24 31 chr6 55739705 55739832 -126675410 - MIR SINE MIR -43 219 94 21 0 0 0 chr6 55740657 55740678 -126674564 + AT_rich Low_complexity Low_complexity 1 21 0 681 307 65 4 chr6 55740817 55741048 -126674194 + MIR SINE MIR 13 257 -5 459 294 96 0 chr6 55741598 55741744 -126673498 + MER5A DNA MER1_type 29 188 -1 310 272 130 0 chr6 55741763 55741855 -126673387 + MIR SINE MIR 34 137 -125 278 230 14 3 chr6 55742581 55742661 -126672581 + HsTC2 DNA Tc2 1818 1896 -2 4354 95 18 0 chr6 55742723 55743333 -126671909 + L1PA10 LINE L1 5544 6164 -4 21 0 0 0 chr6 55744658 55744679 -126670563 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 55746412 55746433 -126668809 + AT_rich Low_complexity Low_complexity 1 21 0 409 299 89 59 chr6 55746545 55746937 -126668305 + L1MEd LINE L1 1190 1593 -4937 860 212 0 6 chr6 55746985 55747150 -126668092 + FAM SINE Alu 1 164 -11 321 68 0 0 chr6 55747151 55747195 -126668047 + (GA)n Simple_repeat Simple_repeat 2 45 0 319 320 20 0 chr6 55747227 55747327 -126667915 + HAL1 LINE L1 1379 1480 -1027 3088 88 16 2 chr6 55747925 55748368 -126666874 + L1MA1 LINE L1 5854 6302 0 30 0 0 0 chr6 55748477 55748507 -126666735 + AT_rich Low_complexity Low_complexity 1 30 0 835 253 40 69 chr6 55749493 55749872 -126665370 + L1MEd LINE L1 34 401 -6139 2077 228 89 36 chr6 55749929 55750729 -126664513 + L1MEd LINE L1 1695 2536 -4004 278 321 67 8 chr6 55751388 55751522 -126663720 + MIR SINE MIR 65 206 -56 402 21 0 0 chr6 55752703 55752750 -126662492 + (CA)n Simple_repeat Simple_repeat 2 48 0 2615 45 0 3 chr6 55753202 55753514 -126661728 - AluY SINE Alu 0 311 1 458 320 101 46 chr6 55753974 55754499 -126660743 - L1ME LINE L1 -312 5809 5256 419 297 81 29 chr6 55755143 55755389 -126659853 - MIR SINE MIR 0 262 4 2519 48 0 13 chr6 55758683 55758998 -126656244 - AluY SINE Alu 0 311 1 27 81 0 0 chr6 55759441 55759503 -126655739 + AT_rich Low_complexity Low_complexity 1 62 0 235 274 12 24 chr6 55759887 55759971 -126655271 + GA-rich Low_complexity Low_complexity 2 84 0 1322 218 0 50 chr6 55761512 55761833 -126653409 + AluJo SINE Alu 1 305 -7 594 156 10 0 chr6 55763086 55763182 -126652060 - L1MC/D LINE L1 -460 5782 5686 245 298 43 43 chr6 55764118 55764259 -126650983 + MIR SINE MIR 48 188 -74 256 254 45 15 chr6 55765140 55765207 -126650035 + MIR SINE MIR 21 89 -119 272 296 86 7 chr6 55765551 55765703 -126649539 - L1M4 LINE L1 -2258 3888 3725 707 270 11 11 chr6 55765826 55766011 -126649231 + MLT1B LTR MaLR 206 390 0 1976 235 15 11 chr6 55766011 55766684 -126648558 + MLT1B-int LTR MaLR 1 887 -484 341 256 0 0 chr6 55766749 55766831 -126648411 + MLT-int LTR MaLR 686 767 -968 1969 249 39 7 chr6 55766952 55767414 -126647828 + MLT1B-int LTR MaLR 1256 1732 -3 720 219 70 135 chr6 55767423 55767838 -126647404 + MLT1B LTR MaLR 1 388 -2 2988 165 34 71 chr6 55767840 55768544 -126646698 + L1MB3 LINE L1 5502 6179 -4 2225 173 59 5 chr6 55769638 55770042 -126645200 + MSTB LTR MaLR 1 426 0 226 334 0 0 chr6 55770961 55771032 -126644210 + MIR SINE MIR 72 143 -65 611 354 28 0 chr6 55771196 55771408 -126643834 - MIR SINE MIR -28 234 17 827 204 167 34 chr6 55771605 55771928 -126643314 + LOR1b LTR ERV1 96 461 0 2235 23 4 0 chr6 55772353 55772617 -126642625 + L1PA3 LINE L1 5888 6152 -3 303 310 179 0 chr6 55773291 55773436 -126641806 + MIR SINE MIR 87 257 -5 547 257 95 0 chr6 55773982 55774130 -126641112 + MER5A DNA MER1_type 28 189 0 333 258 124 21 chr6 55774148 55774245 -126640997 + MIR SINE MIR 34 140 -122 420 248 62 31 chr6 55774792 55774953 -126640289 + LTR16C LTR ERVL 324 489 -2 360 0 0 0 chr6 55775206 55775246 -126639996 + (TG)n Simple_repeat Simple_repeat 1 40 0 593 360 84 39 chr6 55775469 55776627 -126638615 + L2 LINE L2 368 1577 -1737 1002 157 7 0 chr6 55776739 55776892 -126638350 - AluSc SINE Alu -23 286 133 215 324 7 34 chr6 55776892 55777040 -126638202 + L2 LINE L2 1674 1817 -1497 724 206 25 60 chr6 55777117 55777316 -126637926 + MER20 DNA MER1_type 27 218 -1 228 342 116 17 chr6 55777317 55777618 -126637624 + L2 LINE L2 1871 2201 -1113 194 373 151 16 chr6 55777623 55777875 -126637367 + L2 LINE L2 2670 2955 -359 24 32 0 0 chr6 55779060 55779091 -126636151 + AT_rich Low_complexity Low_complexity 1 31 0 569 349 13 8 chr6 55779416 55779651 -126635591 + MIR SINE MIR 26 261 -1 1650 237 66 47 chr6 55779947 55780432 -126634810 + MLT1D LTR MaLR 12 505 0 2629 208 37 30 chr6 55781171 55781738 -126633504 + L1M4c LINE L1 2 572 -6277 * 9481 221 45 25 chr6 55781736 55783961 -126631281 + L1M4c LINE L1 2040 4764 -2084 1885 155 10 3 chr6 55783961 55784252 -126630990 + AluSx SINE Alu 1 293 -19 9481 221 45 25 chr6 55784252 55784700 -126630542 + L1M4c LINE L1 4764 5201 -1647 268 279 29 21 chr6 55786251 55786267 -126628975 - L1MA10 LINE L1 0 6334 6319 1957 262 68 42 chr6 55786267 55786744 -126628498 - L1ME3 LINE L1 -7 6155 5692 402 21 0 0 chr6 55786744 55786791 -126628451 + (TG)n Simple_repeat Simple_repeat 2 48 0 1957 262 68 42 chr6 55786791 55787385 -126627857 - L1ME3 LINE L1 -470 5692 5050 653 317 15 24 chr6 55787400 55787731 -126627511 + L1ME3 LINE L1 5392 5719 -1129 415 299 94 18 chr6 55788641 55788865 -126626377 - MIR SINE MIR -4 258 18 318 318 9 9 chr6 55789197 55789307 -126625935 - L2 LINE L2 -4 3309 3200 26 0 0 0 chr6 55789787 55789813 -126625429 + AT_rich Low_complexity Low_complexity 1 26 0 1733 279 60 4 chr6 55791391 55791904 -126623338 - MLT1F LTR MaLR 0 542 1 1403 223 13 60 chr6 55792098 55792479 -126622763 + MLT1A1 LTR MaLR 1 363 -2 599 309 186 6 chr6 55792605 55792971 -126622271 - LTR33 LTR ERVL 0 521 90 202 196 0 0 chr6 55793162 55793174 -126622068 + A-rich Low_complexity Low_complexity 1 46 0 2067 116 0 19 chr6 55793174 55793526 -126621716 + AluSq SINE Alu 1 346 0 216 367 50 8 chr6 55793552 55793672 -126621570 - L2 LINE L2 0 3313 3189 7295 32 0 0 chr6 55793888 55795402 -126619840 - L1PA4 LINE L1 -130 6025 4512 953 68 8 8 chr6 55795402 55795562 -126619680 + L1PA4 LINE L1 6009 6174 0 9728 152 23 1 chr6 55796903 55799413 -126615829 + L1PA11 LINE L1 3631 6172 -2 3539 113 35 4 chr6 55800652 55801202 -126614040 - Tigger4(Zombi) DNA MER2_type -1 2730 2164 14708 168 46 17 chr6 55801259 55803067 -126612175 - L1MA3 LINE L1 -1 7723 5970 252 77 0 0 chr6 55803067 55803106 -126612136 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 14708 168 46 17 chr6 55803106 55803351 -126611891 - L1MA3 LINE L1 -1754 5970 5734 351 0 0 0 chr6 55803351 55803390 -126611852 + (TG)n Simple_repeat Simple_repeat 2 40 0 14708 168 46 17 chr6 55803390 55804781 -126610461 - L1MA3 LINE L1 -1990 5734 4386 2261 138 46 0 chr6 55804781 55805172 -126610070 - L1PA13 LINE L1 -1 6162 5754 14708 168 46 17 chr6 55805172 55806418 -126608824 - L1MA3 LINE L1 -3338 4386 3178 2158 87 0 4 chr6 55806418 55806695 -126608547 - AluY SINE Alu 0 311 36 14708 168 46 17 chr6 55806695 55809096 -126606146 - L1MA3 LINE L1 -4546 3178 17 189 121 0 0 chr6 55809110 55809143 -126606099 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 292 21 10 104 chr6 55809136 55809232 -126606010 + (TA)n Simple_repeat Simple_repeat 2 88 0 588 139 131 8 chr6 55809278 55809400 -126605842 - LTR22 LTR ERVK -372 137 1 21620 99 5 3 chr6 55809400 55812609 -126602633 - HERVK22 LTR ERVK 0 6837 2294 5159 118 24 4 chr6 55812579 55813341 -126601901 - HERVK22 LTR ERVK -6060 777 1 * 1594 245 17 40 chr6 55813341 55813810 -126601432 - LTR22A LTR ERVK 0 458 1 14587 199 24 13 chr6 55813948 55820070 -126595172 + L1PB1 LINE L1 6 6506 -361 827 93 12 30 chr6 55820074 55820333 -126594909 + (TA)n Simple_repeat Simple_repeat 1 255 0 739 118 29 9 chr6 55820447 55821020 -126594222 + (TA)n Simple_repeat Simple_repeat 1 584 0 2219 141 0 3 chr6 55821031 55821400 -126593842 + L1PB1 LINE L1 6500 6867 0 737 243 145 55 chr6 55821734 55822159 -126593083 + MLT1C LTR MaLR 1 464 -3 501 310 87 29 chr6 55822225 55822570 -126592672 - L1ME3A LINE L1 -189 5981 5617 2156 60 3 3 chr6 55823092 55823399 -126591843 + AluY SINE Alu 1 307 0 1992 186 25 32 chr6 55823742 55824178 -126591064 + Tigger2a DNA MER2_type 1 433 -1 2272 202 23 39 chr6 55824641 55825156 -126590086 + MER67D LTR ERV1 8 514 0 436 247 97 39 chr6 55826393 55826547 -126588695 - HAL1 LINE L1 -1603 904 742 364 188 0 0 chr6 55827217 55827281 -126587961 - MER92C LTR ERV1 0 554 491 328 257 14 0 chr6 55827453 55827527 -126587715 - MER92B LTR ERV1 -561 75 1 1074 200 57 5 chr6 55828004 55828298 -126586944 + MER67C LTR ERV1 245 457 -57 358 174 54 33 chr6 55828278 55828370 -126586872 + MER92B LTR ERV1 543 636 0 * 284 290 113 99 chr6 55828521 55828866 -126586376 - HAL1 LINE L1 -1879 628 279 301 278 33 11 chr6 55829839 55829929 -126585313 + MER5A DNA MER1_type 86 177 -12 465 332 28 43 chr6 55830994 55831205 -126584037 - MIR SINE MIR -50 212 5 297 311 42 17 chr6 55831213 55831332 -126583910 + MIR SINE MIR 99 220 -42 21 36 0 0 chr6 55831873 55831901 -126583341 + AT_rich Low_complexity Low_complexity 1 28 0 208 227 303 34 chr6 55833542 55833661 -126581581 - MIR SINE MIR -64 198 48 2411 128 70 2 chr6 55833869 55834268 -126580974 - MSTB LTR MaLR 0 426 1 21 57 0 0 chr6 55835700 55835735 -126579507 + AT_rich Low_complexity Low_complexity 1 35 0 333 0 0 0 chr6 55836056 55836093 -126579149 + (TG)n Simple_repeat Simple_repeat 2 38 0 279 338 93 20 chr6 55839509 55839660 -126575582 + MIR3 SINE MIR 47 208 0 423 374 77 38 chr6 55840165 55841063 -126574179 - L2 LINE L2 -2014 1300 368 360 0 0 0 chr6 55841286 55841326 -126573916 + (CA)n Simple_repeat Simple_repeat 1 40 0 413 230 68 37 chr6 55841579 55841740 -126573502 - LTR16C LTR ERVL -2 489 324 434 167 8 24 chr6 55842309 55842435 -126572807 + GA-rich Low_complexity Low_complexity 2 125 0 180 0 0 0 chr6 55842431 55842451 -126572791 + (CAAAG)n Simple_repeat Simple_repeat 2 21 0 * 658 270 31 13 chr6 55842561 55842787 -126572455 + L1MC4 LINE L1 7687 7916 -126 1758 151 0 34 chr6 55843040 55843380 -126571862 - AluSx SINE Alu 0 330 1 30 27 0 0 chr6 55843680 55843717 -126571525 + AT_rich Low_complexity Low_complexity 1 37 0 292 283 36 48 chr6 55843910 55844076 -126571166 - MIR SINE MIR -17 245 82 310 265 0 51 chr6 55844195 55844293 -126570949 + L1MC4 LINE L1 6611 6703 -1339 309 178 68 14 chr6 55844236 55844309 -126570933 - L1MCa LINE L1 -4358 2068 1992 * 258 310 28 14 chr6 55844328 55844399 -126570843 - L2 LINE L2 0 3272 3201 205 274 32 11 chr6 55844400 55844495 -126570747 + (CATA)n Simple_repeat Simple_repeat 4 100 0 264 100 0 0 chr6 55844495 55844535 -126570707 + (TG)n Simple_repeat Simple_repeat 1 40 0 23 33 0 0 chr6 55845948 55845978 -126569264 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr6 55846456 55846498 -126568744 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr6 55847529 55847565 -126567677 + AT_rich Low_complexity Low_complexity 1 36 0 550 258 86 29 chr6 55847600 55847844 -126567398 + L1ME3A LINE L1 5908 6165 -5 608 254 53 12 chr6 55848007 55848176 -126567066 - MER63A DNA MER1_type -20 190 15 345 354 2 49 chr6 55848674 55848904 -126566338 + MIR SINE MIR 38 256 -6 216 0 0 0 chr6 55849468 55849492 -126565750 + (A)n Simple_repeat Simple_repeat 1 24 0 1416 218 3 24 chr6 55850020 55850318 -126564924 - AluJo SINE Alu -9 293 2 673 302 78 21 chr6 55850928 55851409 -126563833 - L2 LINE L2 -78 3235 2723 266 257 40 0 chr6 55851441 55851515 -126563727 - L1ME3A LINE L1 -17 6153 6077 2053 147 0 0 chr6 55852878 55853171 -126562071 - AluSx SINE Alu -15 297 5 2054 93 13 0 chr6 55854287 55854588 -126560654 - pTR5 LTR ERV1 -2046 392 88 1404 179 3 31 chr6 55854589 55854946 -126560296 - pTR5 LTR ERV1 -1349 1089 743 342 172 65 0 chr6 55854981 55855074 -126560168 + L1ME3A LINE L1 5750 5848 -322 4619 114 16 0 chr6 55857122 55857806 -126557436 - L1PA11 LINE L1 0 6174 5480 564 149 9 35 chr6 55859769 55859883 -126555359 - L1MA10 LINE L1 0 6334 6224 183 80 0 0 chr6 55861744 55861769 -126553473 + (TG)n Simple_repeat Simple_repeat 2 26 0 684 286 71 5 chr6 55861916 55862140 -126553102 - MIR SINE MIR -15 247 9 1848 304 122 23 chr6 55862402 55863318 -126551924 + L3 LINE CR1 411 1417 -160 553 328 126 30 chr6 55863735 55864140 -126551102 - L1ME LINE L1 -361 5760 5317 2114 125 0 0 chr6 55864542 55864845 -126550397 + AluSg SINE Alu 2 304 -6 638 183 0 8 chr6 55865007 55865127 -126550115 - L1PA15 LINE L1 0 6165 6047 1797 148 16 14 chr6 55865127 55865652 -126549590 - L1P4 LINE L1 -609 5556 5029 237 250 11 0 chr6 55865645 55865733 -126549509 - L1P LINE L1 -2975 3171 3083 * 608 244 11 0 chr6 55865731 55865907 -126549335 + L1 LINE L1 3351 3528 -2618 * 6541 213 79 7 chr6 55865905 55867484 -126547758 - L1P4 LINE L1 -1102 5044 3352 872 229 8 12 chr6 55867483 55867727 -126547515 + L1P4 LINE L1 3083 3325 -2821 * 198 0 0 0 chr6 55867777 55867799 -126547443 + (TG)n Simple_repeat Simple_repeat 2 23 0 214 354 0 0 chr6 55868208 55868287 -126546955 + L3b LINE CR1 1254 1332 -251 232 371 53 16 chr6 55868556 55868874 -126546368 + L1MC/D LINE L1 5391 5720 -2088 29 0 0 0 chr6 55869066 55869095 -126546147 + AT_rich Low_complexity Low_complexity 1 29 0 1403 184 32 46 chr6 55870853 55871170 -126544072 - AluJo SINE Alu 0 316 4 251 318 9 0 chr6 55871529 55871639 -126543603 + (TA)n Simple_repeat Simple_repeat 1 111 0 2783 209 42 34 chr6 55871639 55872047 -126543195 - MER82 DNA MER2_type 0 653 237 1760 187 59 35 chr6 55872047 55872502 -126542740 + MER31B LTR ERV1 1 466 0 2783 209 42 34 chr6 55872502 55872739 -126542503 - MER82 DNA MER2_type -416 237 3 215 209 0 0 chr6 55872955 55872998 -126542244 + GA-rich Low_complexity Low_complexity 2 44 0 510 171 60 17 chr6 55875438 55875555 -126539687 - MER31A LTR ERV1 0 485 364 2811 75 5 0 chr6 55875555 55875928 -126539314 - L1P LINE L1 -1120 5026 4652 * 6698 56 9 0 chr6 55875921 55876953 -126538289 + L1PA5 LINE L1 5067 6107 -47 1694 197 10 38 chr6 55876974 55877365 -126537877 - MER31A LTR ERV1 -104 381 2 548 257 25 40 chr6 55877413 55877615 -126537627 + L2 LINE L2 3115 3313 0 207 100 0 0 chr6 55878571 55878601 -126536641 + (CAA)n Simple_repeat Simple_repeat 2 31 0 270 173 25 12 chr6 55879946 55880027 -126535215 + CT-rich Low_complexity Low_complexity 4 85 0 1500 136 296 3 chr6 55882356 55882687 -126532555 + MSTA LTR MaLR 1 428 0 26 74 0 0 chr6 55884724 55884778 -126530464 + AT_rich Low_complexity Low_complexity 1 54 0 5983 112 16 3 chr6 55884940 55885868 -126529374 + L1MA1 LINE L1 5362 6301 -1 211 182 0 0 chr6 55886368 55886401 -126528841 + polypyrimidine Low_complexity Low_complexity 1 33 0 261 344 21 0 chr6 55887462 55887555 -126527687 + L2 LINE L2 2494 2588 -726 1484 151 87 4 chr6 55887597 55887862 -126527380 + LTR57 LTR ERVL 125 411 0 2064 144 41 36 chr6 55888191 55888553 -126526689 + THE1B LTR MaLR 1 364 0 11099 106 13 3 chr6 55888554 55890116 -126525126 + THE1B-int LTR MaLR 2 1580 0 1879 161 8 25 chr6 55890116 55890477 -126524765 + THE1A LTR MaLR 1 355 0 837 306 35 61 chr6 55890479 55890874 -126524368 - L1M2c LINE L1 -6142 647 263 11692 196 43 30 chr6 55890895 55892508 -126522734 + L1PA13 LINE L1 1 1601 -5186 2113 104 13 20 chr6 55892508 55892806 -126522436 - AluY SINE Alu -15 296 1 11692 196 43 30 chr6 55892806 55893493 -126521749 + L1PA13 LINE L1 1601 2278 -4509 10367 201 3 22 chr6 55893493 55894662 -126520580 + L1PA13 LINE L1 3844 5033 -1781 1887 176 24 21 chr6 55894662 55894998 -126520244 - MER1B DNA MER1_type 0 337 1 10367 201 3 22 chr6 55894998 55896823 -126518419 + L1PA13 LINE L1 5033 6795 -19 319 289 70 114 chr6 55896823 55897096 -126518146 - L1M2c LINE L1 -6526 263 3 789 335 76 38 chr6 55897098 55897688 -126517554 + L2 LINE L2 2619 3220 -93 1288 249 33 33 chr6 55897688 55898078 -126517164 - MLT1B LTR MaLR 0 390 1 234 116 0 0 chr6 55899469 55899512 -126515730 + (TA)n Simple_repeat Simple_repeat 2 44 0 608 90 20 0 chr6 55899521 55899621 -126515621 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 1460 209 77 25 chr6 55899782 55900145 -126515097 - L1MB5 LINE L1 -104 6070 5689 2932 263 128 19 chr6 55900234 55901450 -126513792 - L1MEc LINE L1 -5004 1392 45 21 0 0 0 chr6 55901657 55901678 -126513564 + AT_rich Low_complexity Low_complexity 1 21 0 350 327 18 0 chr6 55902810 55902923 -126512319 + L3 LINE CR1 674 788 -789 214 147 0 0 chr6 55903006 55903040 -126512202 + (TG)n Simple_repeat Simple_repeat 1 34 0 1706 175 47 27 chr6 55903791 55904155 -126511087 - MLT1B LTR MaLR -19 486 1 484 334 86 47 chr6 55904202 55904442 -126510800 - HERV16 LTR ERVL -2296 3468 3208 2283 106 0 6 chr6 55904442 55904753 -126510489 - AluSg SINE Alu -1 309 1 484 334 86 47 chr6 55904753 55904874 -126510368 - HERV16 LTR ERVL -2556 3208 3093 * 1157 327 50 17 chr6 55904871 55905413 -126509829 - HERV16 LTR ERVL -2019 2977 2418 1405 310 47 40 chr6 55905430 55906195 -126509047 - HERV16 LTR ERVL -3906 1090 321 604 341 5 9 chr6 55906232 55906443 -126508799 - HERV16 LTR ERVL -4752 244 35 332 329 72 0 chr6 55906485 55906652 -126508590 - LTR16A LTR ERVL -12 438 260 355 162 29 0 chr6 55907340 55907408 -126507834 + MLT1F LTR MaLR 466 535 -7 372 340 12 37 chr6 55907425 55907587 -126507655 + L2 LINE L2 3155 3312 -1 23 54 0 0 chr6 55908726 55908763 -126506479 + AT_rich Low_complexity Low_complexity 1 37 0 214 156 31 0 chr6 55908769 55908833 -126506409 + (TA)n Simple_repeat Simple_repeat 1 66 0 1582 213 96 14 chr6 55910251 55910617 -126504625 - MSTD LTR MaLR 0 396 1 6761 159 106 25 chr6 55910812 55912360 -126502882 + MER52A LTR ERV1 1 1755 0 373 259 121 30 chr6 55912977 55913143 -126502099 - L2 LINE L2 -11 3302 3122 2206 119 0 0 chr6 55914097 55914390 -126500852 + AluSq SINE Alu 3 295 -18 2394 60 0 13 chr6 55914703 55915004 -126500238 - AluSc SINE Alu -12 297 1 2163 111 6 13 chr6 55916274 55916589 -126498653 - AluSp SINE Alu 0 313 1 209 154 58 19 chr6 55917500 55917552 -126497690 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 182 283 75 0 chr6 55918947 55919000 -126496242 - L2 LINE L2 -225 3047 2991 379 250 139 7 chr6 55919080 55919224 -126496018 - MIR SINE MIR -73 189 27 196 315 87 92 chr6 55919420 55919719 -126495523 - L2 LINE L2 -452 2862 2564 1811 173 0 7 chr6 55919719 55920025 -126495217 + AluJb SINE Alu 1 304 -8 196 315 87 92 chr6 55920025 55920217 -126495025 - L2 LINE L2 -750 2564 2373 23 33 0 0 chr6 55920860 55920890 -126494352 + AT_rich Low_complexity Low_complexity 1 30 0 2233 101 0 7 chr6 55921381 55921678 -126493564 - AluY SINE Alu -15 296 2 289 309 37 12 chr6 55922028 55922109 -126493133 + MIR SINE MIR 10 92 -170 43929 42 1 3 chr6 55922727 55928889 -126486353 + L1PA4 LINE L1 8 6152 -3 444 337 76 6 chr6 55929641 55929813 -126485429 + MIR3 SINE MIR 16 199 -9 264 271 28 37 chr6 55930568 55930675 -126484567 - MIR SINE MIR -7 255 150 355 310 33 33 chr6 55931738 55931922 -126483320 + MIR SINE MIR 79 262 0 24 77 0 0 chr6 55933707 55933759 -126481483 + AT_rich Low_complexity Low_complexity 1 52 0 224 297 0 0 chr6 55933778 55933852 -126481390 + (TA)n Simple_repeat Simple_repeat 1 74 0 282 339 70 17 chr6 55936209 55936446 -126478796 + MIR3 SINE MIR 11 262 0 190 260 80 40 chr6 55936768 55936868 -126478374 + MIR SINE MIR 157 260 -2 252 304 22 11 chr6 55937388 55937480 -126477762 - MIR SINE MIR -14 248 156 21 0 0 0 chr6 55937821 55937842 -126477400 + AT_rich Low_complexity Low_complexity 1 21 0 798 250 57 29 chr6 55938140 55938384 -126476858 - MIR SINE MIR -1 261 11 987 261 13 36 chr6 55940452 55940759 -126474483 - L1MD2 LINE L1 -5 6354 6055 4097 240 57 38 chr6 55940791 55942523 -126472719 - L1MDa LINE L1 -3515 3025 1183 2539 55 0 7 chr6 55942523 55942832 -126472410 + AluY SINE Alu 1 307 -4 4097 240 57 38 chr6 55942832 55943170 -126472072 - L1MDa LINE L1 -5357 1183 853 522 280 63 85 chr6 55943322 55943640 -126471602 - L1MDa LINE L1 -6196 344 34 584 273 59 86 chr6 55943796 55944133 -126471109 - L1MDa LINE L1 -6196 344 17 250 279 87 19 chr6 55944134 55944238 -126471004 + MIR SINE MIR 104 214 -48 448 16 33 0 chr6 55945022 55945083 -126470159 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 522 306 70 36 chr6 55945436 55945737 -126469505 - L2 LINE L2 -1390 1924 1614 412 127 0 0 chr6 55946066 55946129 -126469113 + L1MA4A LINE L1 6063 6125 -178 6095 90 16 4 chr6 55946130 55947332 -126467910 - L1PA13 LINE L1 -5 6158 4949 1005 99 23 17 chr6 55947332 55947444 -126467798 + L1MA4A LINE L1 6125 6245 -58 388 147 67 0 chr6 55947444 55947519 -126467723 + MADE1 DNA Mariner 1 80 0 1005 99 23 17 chr6 55947519 55947573 -126467669 + L1MA4A LINE L1 6245 6297 -6 392 286 27 27 chr6 55948394 55948541 -126466701 - L1MC4a LINE L1 -1564 6244 6098 492 277 98 13 chr6 55948554 55948789 -126466453 - L1MC4a LINE L1 -1795 6013 5759 188 379 0 0 chr6 55949045 55949103 -126466139 - MIR SINE MIR -135 73 16 243 316 13 0 chr6 55950094 55950170 -126465072 + GA-rich Low_complexity Low_complexity 1 77 0 333 155 0 0 chr6 55952701 55952759 -126462483 + CT-rich Low_complexity Low_complexity 4 61 0 2368 143 17 38 chr6 55952759 55953235 -126462007 - L1MA8 LINE L1 0 6291 5826 1107 266 207 26 chr6 55954275 55954729 -126460513 + MLT1G LTR MaLR 10 545 -45 26 50 0 0 chr6 55955761 55955801 -126459441 + AT_rich Low_complexity Low_complexity 1 40 0 622 200 17 94 chr6 55956233 55956413 -126458829 - MER20 DNA MER1_type -17 202 37 397 227 23 23 chr6 55958936 55959024 -126456218 - L1MC4 LINE L1 -1340 6702 6615 446 71 29 0 chr6 55959032 55959102 -126456140 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 528 230 62 12 chr6 55959243 55959404 -126455838 - L1MB5 LINE L1 -93 6091 5923 252 306 207 9 chr6 55960280 55960391 -126454851 - L2 LINE L2 -216 3056 2924 628 133 9 26 chr6 55960423 55960536 -126454706 - AluSg/x SINE Alu -10 300 190 771 136 15 15 chr6 55960640 55960772 -126454470 - AluSq/x SINE Alu -175 138 7 482 296 56 110 chr6 55961041 55961329 -126453913 + LTR16B LTR ERVL 28 283 -181 1185 63 23 6 chr6 55961329 55961504 -126453738 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 482 296 56 110 chr6 55961504 55961677 -126453565 + LTR16B LTR ERVL 283 464 0 340 297 125 86 chr6 55963209 55963512 -126451730 - L2 LINE L2 -489 2825 2511 307 289 50 8 chr6 55963647 55963768 -126451474 + MER94 DNA DNA 5 130 -4 658 323 121 44 chr6 55963842 55964575 -126450667 + L2 LINE L2 1896 2685 -629 313 301 0 82 chr6 55964997 55965143 -126450099 + L2 LINE L2 3180 3313 0 237 315 34 22 chr6 55965219 55965308 -126449934 + MIR SINE MIR 59 148 -114 262 304 0 0 chr6 55966434 55966513 -126448729 + GA-rich Low_complexity Low_complexity 2 80 0 378 309 66 11 chr6 55966921 55966989 -126448253 - L3b LINE CR1 -66 1517 1454 1572 108 5 0 chr6 55966989 55967201 -126448041 + AluSp SINE Alu 87 299 -14 378 309 66 11 chr6 55967201 55967313 -126447929 - L3b LINE CR1 -129 1454 1327 188 98 0 24 chr6 55969680 55969721 -126445521 + (TC)n Simple_repeat Simple_repeat 1 40 0 1105 309 40 31 chr6 55969753 55970177 -126445065 + LTR16A LTR ERVL 18 445 -5 222 62 0 0 chr6 55970365 55970397 -126444845 + (CA)n Simple_repeat Simple_repeat 1 32 0 481 279 107 38 chr6 55970426 55970874 -126444368 - L1M4 LINE L1 -768 5378 4900 267 296 129 38 chr6 55971279 55971411 -126443831 + MIR SINE MIR 50 193 -69 26 0 0 0 chr6 55971462 55971488 -126443754 + AT_rich Low_complexity Low_complexity 1 26 0 1377 132 0 9 chr6 55971622 55971866 -126443376 - AluSg/x SINE Alu 0 313 72 1452 122 101 82 chr6 55971929 55972297 -126442945 - THE1C LTR MaLR 0 375 1 2141 132 3 0 chr6 55972404 55972708 -126442534 - AluSg SINE Alu -5 305 1 446 327 30 5 chr6 55972745 55972947 -126442295 - HAL1 LINE L1 -699 1808 1602 547 280 77 79 chr6 55972950 55973353 -126441889 - MLT1I LTR MaLR -4 405 4 418 347 96 5 chr6 55973644 55973863 -126441379 + L2 LINE L2 2472 2710 -604 4018 228 7 30 chr6 55973865 55974933 -126440309 + L1PA16 LINE L1 2912 3954 -2192 1831 233 56 66 chr6 55974937 55975495 -126439747 + MLT2B3 LTR ERVL 3 554 0 5436 187 23 16 chr6 55975495 55977683 -126437559 + L1PA16 LINE L1 3952 6157 -9 444 37 0 0 chr6 55977684 55977738 -126437504 + (CA)n Simple_repeat Simple_repeat 2 55 0 324 348 168 20 chr6 55977754 55978245 -126436997 + L2 LINE L2 2742 3313 0 1646 196 0 3 chr6 55978380 55978681 -126436561 - AluJo SINE Alu -10 302 3 22 80 0 0 chr6 55978722 55978772 -126436470 + AT_rich Low_complexity Low_complexity 1 50 0 2518 62 0 0 chr6 55979208 55979512 -126435730 - AluY SINE Alu -7 304 1 2411 257 47 42 chr6 55979541 55981223 -126434019 - L1ME1 LINE L1 -7 6159 4464 803 284 50 0 chr6 55981220 55981442 -126433800 - L1ME LINE L1 -462 5704 5472 * 543 280 55 39 chr6 55981459 55981820 -126433422 - L1ME1 LINE L1 -1712 4434 4068 23 92 0 0 chr6 55981909 55981974 -126433268 + AT_rich Low_complexity Low_complexity 1 65 0 817 252 105 44 chr6 55982013 55982441 -126432801 - L1ME4a LINE L1 -177 5944 5491 698 259 32 0 chr6 55982695 55982915 -126432327 - L1ME1 LINE L1 -2178 3968 3742 5231 191 19 13 chr6 55983087 55985064 -126430178 - L1MA9 LINE L1 -148 6164 4175 1130 208 7 15 chr6 55985059 55985328 -126429914 - L1MA9 LINE L1 -2449 3697 3431 * 1645 205 0 0 chr6 55985367 55985664 -126429578 + AluJb SINE Alu 6 302 -10 247 335 32 38 chr6 55985693 55985851 -126429391 - L1ME3A LINE L1 -52 6118 5962 1282 266 80 55 chr6 55986019 55986697 -126428545 - L1MC5 LINE L1 -522 7439 6745 361 320 94 27 chr6 55987077 55987333 -126427909 - HAL1b LINE L1 -687 661 389 4956 141 23 23 chr6 55987350 55988431 -126426811 + L1PA16 LINE L1 4397 5492 -674 225 0 0 0 chr6 55988431 55988456 -126426786 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4956 141 23 23 chr6 55988456 55989123 -126426119 + L1PA16 LINE L1 5491 6157 -9 24 0 0 0 chr6 55989493 55989517 -126425725 + AT_rich Low_complexity Low_complexity 1 24 0 9294 92 11 13 chr6 55990343 55991796 -126423446 + L1PA7 LINE L1 4027 5482 -672 2426 84 0 3 chr6 55991796 55992107 -126423135 + AluY SINE Alu 1 310 -1 9294 92 11 13 chr6 55992107 55992772 -126422470 + L1PA7 LINE L1 5482 6147 -7 2129 140 0 0 chr6 55992936 55993244 -126421998 + AluSg1 SINE Alu 1 308 -1 23 0 0 0 chr6 55995247 55995270 -126419972 + AT_rich Low_complexity Low_complexity 1 23 0 1287 218 49 3 chr6 55995270 55995555 -126419687 + AluJo SINE Alu 1 298 -14 29 47 0 0 chr6 55996303 55996346 -126418896 + AT_rich Low_complexity Low_complexity 1 43 0 320 265 20 0 chr6 55997766 55997864 -126417378 - MER103 DNA DNA -64 102 3 514 271 136 6 chr6 55997988 55998165 -126417077 - MER58C DNA MER1_type -15 200 1 5136 132 40 19 chr6 55998375 55999133 -126416109 + L1PA15 LINE L1 4964 5751 -414 2044 141 0 13 chr6 55999133 55999438 -126415804 + AluSg SINE Alu 4 304 -6 5136 132 40 19 chr6 55999438 55999861 -126415381 + L1PA15 LINE L1 5751 6164 -1 231 123 82 0 chr6 56000162 56000235 -126415007 + (TA)n Simple_repeat Simple_repeat 2 80 0 26 0 0 0 chr6 56002069 56002095 -126413147 + AT_rich Low_complexity Low_complexity 1 26 0 768 132 7 7 chr6 56003107 56003243 -126411999 + L1PA15 LINE L1 6030 6165 0 2676 94 8 6 chr6 56004290 56004653 -126410589 - THE1B LTR MaLR 0 364 1 31 26 0 0 chr6 56004958 56004996 -126410246 + AT_rich Low_complexity Low_complexity 1 38 0 653 161 9 0 chr6 56005966 56006078 -126409164 + L1PA13 LINE L1 6034 6146 -17 234 0 0 0 chr6 56008345 56008371 -126406871 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 114 0 0 chr6 56008734 56008769 -126406473 + (TTC)n Simple_repeat Simple_repeat 2 36 0 360 357 40 22 chr6 56009753 56009980 -126405262 - MIR SINE MIR -27 235 5 231 307 204 0 chr6 56011323 56011499 -126403743 + MIR SINE MIR 35 246 -16 498 46 0 0 chr6 56011642 56011707 -126403535 + (TG)n Simple_repeat Simple_repeat 2 66 0 534 215 37 0 chr6 56012568 56012675 -126402567 + MER5A DNA MER1_type 79 189 0 288 0 0 0 chr6 56013063 56013095 -126402147 + (TA)n Simple_repeat Simple_repeat 2 33 0 5002 135 18 54 chr6 56013686 56014108 -126401134 + L1MC1 LINE L1 5426 5862 -471 1502 183 0 66 chr6 56014108 56014454 -126400788 + AluJb SINE Alu 3 328 0 5002 135 18 54 chr6 56014454 56014972 -126400270 + L1MC1 LINE L1 5862 6333 0 25 0 0 0 chr6 56015035 56015060 -126400182 + AT_rich Low_complexity Low_complexity 1 25 0 1068 51 0 0 chr6 56015060 56015197 -126400045 - L1PA4 LINE L1 -3 6152 6016 316 26 0 0 chr6 56015197 56015235 -126400007 + L1P LINE L1 2841 2878 -3268 290 351 31 21 chr6 56015676 56015867 -126399375 + MIR3 SINE MIR 3 195 -13 386 347 16 0 chr6 56015904 56016025 -126399217 - MIR SINE MIR -124 138 16 21 0 0 0 chr6 56016180 56016201 -126399041 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 56017373 56017395 -126397847 + AT_rich Low_complexity Low_complexity 1 22 0 196 51 128 0 chr6 56017881 56017920 -126397322 - MIR SINE MIR -154 108 65 2187 41 41 24 chr6 56020014 56020305 -126394937 - AluY SINE Alu -14 297 2 288 250 97 73 chr6 56022283 56022407 -126392835 + L2 LINE L2 3182 3308 -5 453 337 80 20 chr6 56022648 56022847 -126392395 + MIR SINE MIR 20 230 -32 24 53 0 0 chr6 56022931 56022969 -126392273 + AT_rich Low_complexity Low_complexity 1 38 0 378 257 11 81 chr6 56024032 56024212 -126391030 - MIR SINE MIR -50 158 30 206 324 199 23 chr6 56024340 56024556 -126390686 - MIR SINE MIR -7 255 2 26 30 0 0 chr6 56024966 56024999 -126390243 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 56025049 56025078 -126390164 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 56025415 56025438 -126389804 + AT_rich Low_complexity Low_complexity 1 23 0 42 20 0 0 chr6 56025736 56025785 -126389457 + AT_rich Low_complexity Low_complexity 1 49 0 257 252 114 30 chr6 56026920 56027051 -126388191 + MLT1L LTR MaLR 466 607 -8 193 351 52 0 chr6 56028031 56028108 -126387134 - L2 LINE L2 0 3272 3192 255 61 0 0 chr6 56028637 56028670 -126386572 + (TG)n Simple_repeat Simple_repeat 1 33 0 431 304 47 7 chr6 56030833 56030981 -126384261 - MIR SINE MIR 0 262 109 350 238 94 56 chr6 56031421 56031581 -126383661 + MIR SINE MIR 97 262 0 2332 51 13 35 chr6 56032219 56032532 -126382710 - AluY SINE Alu -5 306 1 2591 295 58 13 chr6 56032883 56033799 -126381443 + L2 LINE L2 1575 2531 -783 26 0 0 0 chr6 56033965 56033991 -126381251 + AT_rich Low_complexity Low_complexity 1 26 0 231 345 149 38 chr6 56034728 56035250 -126379992 - L2 LINE L2 -639 2675 2096 430 213 0 0 chr6 56035259 56035339 -126379903 - FLAM_A SINE Alu -59 83 4 341 262 68 10 chr6 56036236 56036339 -126378903 - MIR SINE MIR -31 231 123 283 366 29 80 chr6 56037279 56037635 -126377607 - L2 LINE L2 0 3272 2936 804 290 23 5 chr6 56037635 56037849 -126377393 + MIR SINE MIR 3 220 -42 365 209 86 9 chr6 56039050 56039155 -126376087 + MIR SINE MIR 96 208 -54 30 0 0 0 chr6 56039326 56039356 -126375886 + AT_rich Low_complexity Low_complexity 1 30 0 627 313 50 20 chr6 56039432 56039732 -126375510 + MLT1I LTR MaLR 99 407 -2 498 301 56 46 chr6 56039795 56039991 -126375251 - MIR SINE MIR -62 200 3 342 247 107 84 chr6 56041345 56041523 -126373719 + L3b LINE CR1 1262 1443 -140 275 224 122 30 chr6 56041532 56041709 -126373533 - MIR3 SINE MIR -3 205 12 * 370 303 130 6 chr6 56041643 56041805 -126373437 + MIR SINE MIR 8 189 -73 427 245 126 0 chr6 56042206 56042365 -126372877 - MER69 DNA AcHobo -1 2525 2347 455 229 174 0 chr6 56042366 56042510 -126372732 - MER69 DNA AcHobo -1773 753 585 234 308 0 11 chr6 56042544 56042635 -126372607 + L1MC4 LINE L1 6614 6703 -1339 920 278 82 68 chr6 56042663 56043149 -126372093 - MER69 DNA AcHobo -721 505 13 297 289 89 0 chr6 56043511 56043646 -126371596 + MARNA DNA Mariner 111 257 -329 24 67 0 0 chr6 56043753 56043798 -126371444 + AT_rich Low_complexity Low_complexity 1 45 0 247 260 84 52 chr6 56043832 56043986 -126371256 - L1ME3A LINE L1 -89 6081 5923 1860 242 56 80 chr6 56044058 56045045 -126370197 - L1MC5 LINE L1 -433 7528 6555 274 277 55 9 chr6 56045461 56045575 -126369667 - L1M4c LINE L1 -768 1417 471 269 51 26 0 chr6 56045581 56045620 -126369622 + (TA)n Simple_repeat Simple_repeat 2 41 0 400 313 34 68 chr6 56045710 56046004 -126369238 - HAL1b LINE L1 -981 367 84 261 0 0 0 chr6 56048693 56048722 -126366520 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 588 243 89 37 chr6 56049623 56049837 -126365405 + LTR16A1 LTR ERVL 231 455 -2 444 246 199 0 chr6 56051815 56051986 -126363256 - L2 LINE L2 -190 3123 2919 23 54 0 0 chr6 56055311 56055348 -126359894 + AT_rich Low_complexity Low_complexity 1 37 0 246 359 84 12 chr6 56056415 56056582 -126358660 + MIR SINE MIR 9 187 -75 279 0 0 0 chr6 56057080 56057111 -126358131 + (A)n Simple_repeat Simple_repeat 1 31 0 252 143 13 26 chr6 56059496 56059573 -126355669 + (TA)n Simple_repeat Simple_repeat 2 77 0 221 0 35 0 chr6 56059573 56059602 -126355640 + (CA)n Simple_repeat Simple_repeat 2 31 0 288 77 0 0 chr6 56061021 56061060 -126354182 + (CA)n Simple_repeat Simple_repeat 2 40 0 26 30 0 0 chr6 56062008 56062041 -126353201 + AT_rich Low_complexity Low_complexity 1 33 0 14528 143 7 25 chr6 56062126 56064588 -126350654 - Tigger1 DNA MER2_type 0 2418 2 468 276 147 29 chr6 56064588 56064758 -126350484 - MER58A DNA MER1_type -34 190 1 219 329 61 24 chr6 56064771 56064853 -126350389 + MIR SINE MIR 47 131 -131 * 284 289 86 20 chr6 56064815 56064967 -126350275 - MIR SINE MIR -48 214 53 1008 281 35 29 chr6 56065327 56065790 -126349452 + MLT2B1 LTR ERVL 1 519 -1 886 248 22 13 chr6 56066170 56066400 -126348842 + MLT1C LTR MaLR 234 465 -2 21 71 0 0 chr6 56067251 56067293 -126347949 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr6 56067676 56067698 -126347544 + AT_rich Low_complexity Low_complexity 1 22 0 182 200 22 22 chr6 56069012 56069057 -126346185 + L2 LINE L2 3261 3305 -8 762 263 64 24 chr6 56070927 56071178 -126344064 - MIR SINE MIR 0 262 2 7736 148 14 8 chr6 56071358 56072691 -126342551 - L1PA11 LINE L1 -833 5313 3972 6078 97 11 9 chr6 56072690 56073565 -126341677 + L1PA11 LINE L1 5297 6173 -1 * 265 371 21 21 chr6 56073618 56073761 -126341481 + MIR3 SINE MIR 55 197 -11 258 441 0 0 chr6 56073965 56074076 -126341166 + L2 LINE L2 3137 3247 -25 971 158 29 102 chr6 56074396 56074642 -126340600 + AluJb SINE Alu 11 238 -74 428 322 66 63 chr6 56074656 56075081 -126340161 + MLT1H LTR MaLR 122 547 -2 275 0 29 0 chr6 56076253 56076288 -126338954 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 57 0 0 chr6 56077817 56077852 -126337390 + AT_rich Low_complexity Low_complexity 1 35 0 327 155 172 0 chr6 56078420 56078478 -126336764 - MER58A DNA MER1_type -34 73 6 529 227 17 0 chr6 56078478 56078597 -126336645 - MER96B DNA MER1_type? -296 121 1 264 122 0 0 chr6 56079020 56079061 -126336181 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2064 103 0 7 chr6 56079201 56079493 -126335749 + AluSg SINE Alu 1 290 -20 212 318 82 0 chr6 56080957 56081042 -126334200 - MIR SINE MIR -68 194 103 243 401 20 14 chr6 56081149 56081296 -126333946 - MIR SINE MIR -113 149 2 1589 273 61 40 chr6 56081473 56082309 -126332933 + L2 LINE L2 2432 3285 -28 1191 230 11 43 chr6 56082322 56082670 -126332572 + LTR52 LTR ERVL 13 349 -72 250 170 0 0 chr6 56082671 56082718 -126332524 - L1 LINE L1 -925 5221 5175 874 218 57 31 chr6 56084276 56084376 -126330866 + MIR SINE MIR 3 99 -163 2420 113 16 14 chr6 56084376 56084739 -126330503 - THE1B LTR MaLR 0 364 1 874 218 57 31 chr6 56084739 56084867 -126330375 + MIR SINE MIR 99 237 -25 2370 162 30 40 chr6 56085733 56086028 -126329214 + L1 LINE L1 4114 4403 -1743 495 0 0 0 chr6 56086028 56086083 -126329159 + (TAAAA)n Simple_repeat Simple_repeat 3 57 0 2370 162 30 40 chr6 56086083 56086313 -126328929 + L1 LINE L1 4403 4634 -1512 25 0 0 0 chr6 56086316 56086341 -126328901 + AT_rich Low_complexity Low_complexity 1 25 0 297 336 29 0 chr6 56086470 56086574 -126328668 + MIR SINE MIR 28 134 -128 565 153 0 0 chr6 56087415 56087517 -126327725 - L1MA3 LINE L1 -285 5878 5777 999 260 30 17 chr6 56088681 56089222 -126326020 + MER97b DNA MER1_type? 1 640 -413 265 184 0 0 chr6 56089253 56089302 -126325940 - L1MC4 LINE L1 -1334 6708 6660 6614 140 34 6 chr6 56089480 56091093 -126324149 - L1MA3 LINE L1 -10 6295 4627 22 0 0 0 chr6 56091119 56091141 -126324101 + AT_rich Low_complexity Low_complexity 1 22 0 464 309 77 32 chr6 56091349 56091595 -126323647 - MIR SINE MIR -4 258 2 21 0 0 0 chr6 56093762 56093783 -126321459 + AT_rich Low_complexity Low_complexity 1 21 0 51 0 0 0 chr6 56093884 56093935 -126321307 + AT_rich Low_complexity Low_complexity 1 51 0 443 278 88 1 chr6 56096243 56096442 -126318800 - L1ME3A LINE L1 -292 5872 5659 840 274 71 86 chr6 56096623 56097043 -126318199 + MLT1J1 LTR MaLR 9 422 -24 229 374 68 0 chr6 56097051 56097198 -126318044 + MIR SINE MIR 96 252 -10 204 287 32 43 chr6 56097205 56097299 -126317943 - MIR3 SINE MIR -7 201 109 798 181 5 102 chr6 56098642 56098847 -126316395 - MER67D LTR ERV1 -329 185 1 29 28 0 0 chr6 56100162 56100198 -126315044 + AT_rich Low_complexity Low_complexity 1 36 0 196 237 0 0 chr6 56100198 56100236 -126315006 + MIR SINE MIR 102 139 -123 23 54 0 0 chr6 56100799 56100836 -126314406 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 56102495 56102516 -126312726 + AT_rich Low_complexity Low_complexity 1 21 0 351 253 12 0 chr6 56102585 56102668 -126312574 + L2 LINE L2 3226 3309 -4 1716 158 3 7 chr6 56102775 56103060 -126312182 - AluJb SINE Alu -20 292 9 21 57 0 0 chr6 56104944 56104979 -126310263 + AT_rich Low_complexity Low_complexity 1 35 0 186 275 50 38 chr6 56105096 56105176 -126310066 - MIR SINE MIR -44 218 138 2246 96 0 3 chr6 56105852 56106153 -126309089 - AluSq SINE Alu -13 300 1 2751 200 17 91 chr6 56106370 56107131 -126308111 + L1M3e LINE L1 1 705 -6325 323 343 7 15 chr6 56107259 56107396 -126307846 + L1ME3A LINE L1 5205 5340 -806 252 264 3 0 chr6 56107426 56107514 -126307728 + L1P2 LINE L1 5387 5475 -689 353 278 218 21 chr6 56107518 56107752 -126307490 + L1ME3A LINE L1 5644 5923 -247 351 0 0 0 chr6 56107756 56107795 -126307447 + (CA)n Simple_repeat Simple_repeat 2 40 0 1675 229 6 0 chr6 56107796 56108154 -126307088 - MER47A DNA MER2_type -4 362 3 1434 161 21 8 chr6 56108193 56108429 -126306813 + Tigger3(Golem) DNA MER2_type 2791 3029 0 186 260 0 0 chr6 56108429 56108502 -126306740 + (TA)n Simple_repeat Simple_repeat 2 74 0 276 323 48 18 chr6 56108595 56108762 -126306480 + L1ME3A LINE L1 5965 6136 -34 183 162 0 0 chr6 56108871 56108908 -126306334 + (TTA)n Simple_repeat Simple_repeat 2 38 0 23 54 0 0 chr6 56109086 56109123 -126306119 + AT_rich Low_complexity Low_complexity 1 37 0 36 23 0 0 chr6 56109302 56109345 -126305897 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr6 56110544 56110570 -126304672 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr6 56111075 56111098 -126304144 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 509 257 135 65 chr6 56111891 56112307 -126302935 - L1ME LINE L1 -442 5720 5276 760 309 68 15 chr6 56112311 56112844 -126302398 + L1M4 LINE L1 3935 4515 -1631 1052 70 0 14 chr6 56113912 56114055 -126301187 + L1PA7 LINE L1 6014 6154 0 26 30 0 0 chr6 56114166 56114199 -126301043 + AT_rich Low_complexity Low_complexity 1 33 0 863 141 0 0 chr6 56114326 56114461 -126300781 - THE1C LTR MaLR -240 135 1 897 261 55 45 chr6 56114508 56114930 -126300312 + L1MC4 LINE L1 7480 7905 -137 202 308 0 0 chr6 56114940 56115005 -126300237 + (TA)n Simple_repeat Simple_repeat 1 65 0 252 250 48 0 chr6 56115022 56115126 -126300116 + L1MC4 LINE L1 7933 8041 -1 407 329 144 14 chr6 56115180 56115415 -126299827 + L1M4 LINE L1 2910 3113 -3033 6695 64 23 0 chr6 56115415 56116891 -126298351 + L1PA7 LINE L1 4653 6153 -1 407 329 144 14 chr6 56116891 56117017 -126298225 + L1M4 LINE L1 3113 3318 -2828 1161 196 94 5 chr6 56117035 56117397 -126297845 - MLT1D LTR MaLR -2 503 31 13049 231 33 12 chr6 56117682 56122948 -126292294 - L1PA16 LINE L1 -9 7595 2187 1924 133 0 4 chr6 56123736 56124014 -126291228 - AluSx SINE Alu -35 277 1 12708 178 44 19 chr6 56124014 56126653 -126288589 - L1 LINE L1 -1226 6339 3587 1736 90 84 74 chr6 56126653 56126963 -126288279 - AluSq SINE Alu 0 313 1 12708 178 44 19 chr6 56126963 56127373 -126287869 - L1 LINE L1 -3978 3587 3189 8627 193 84 14 chr6 56127366 56129095 -126286147 - L1 LINE L1 -5704 1861 13 * 410 228 40 0 chr6 56129100 56129201 -126286041 - L1M4 LINE L1 -1396 4750 4646 * 2038 269 30 6 chr6 56129195 56129887 -126285355 - L1M4 LINE L1 -3158 2988 2280 213 322 16 58 chr6 56130292 56130413 -126284829 + MIR3 SINE MIR 93 208 0 832 210 42 0 chr6 56130471 56130638 -126284604 + MER5A DNA MER1_type 16 189 0 2231 115 0 10 chr6 56130691 56131005 -126284237 - AluSq SINE Alu -2 311 1 2257 113 0 0 chr6 56131207 56131509 -126283733 + AluSg SINE Alu 1 302 -8 21 82 0 0 chr6 56131556 56131605 -126283637 + AT_rich Low_complexity Low_complexity 1 49 0 612 209 92 76 chr6 56132246 56132495 -126282747 + L1MD3 LINE L1 7732 7984 -11 736 242 51 33 chr6 56132627 56132842 -126282400 + MER20 DNA MER1_type 1 219 0 28 0 0 0 chr6 56133619 56133647 -126281595 + AT_rich Low_complexity Low_complexity 1 28 0 689 309 77 5 chr6 56133980 56134187 -126281055 - MER58A DNA MER1_type -1 223 2 1002 204 27 32 chr6 56136406 56136626 -126278616 - MER20 DNA MER1_type 0 219 1 22 0 0 0 chr6 56136748 56136770 -126278472 + AT_rich Low_complexity Low_complexity 1 22 0 489 265 23 73 chr6 56138192 56138411 -126276831 - L2 LINE L2 0 3313 3106 1032 313 135 23 chr6 56138496 56139052 -126276190 - L2 LINE L2 -389 2925 2308 707 293 53 28 chr6 56139058 56139379 -126275863 - L2 LINE L2 -1683 1631 1303 225 188 14 29 chr6 56139473 56139542 -126275700 - MER116 DNA Mariner -5 75 8 300 359 77 32 chr6 56139544 56139856 -126275386 + L2 LINE L2 1661 1986 -1328 196 337 11 0 chr6 56140892 56140984 -126274258 + MIR SINE MIR 168 260 -2 201 320 64 0 chr6 56141186 56141264 -126273978 + L2 LINE L2 3186 3268 -4 324 271 135 0 chr6 56141396 56141529 -126273713 - MIR SINE MIR -28 234 84 203 340 66 0 chr6 56141634 56141740 -126273502 - L2 LINE L2 -1 3312 3200 214 207 17 0 chr6 56142807 56142865 -126272377 + (TA)n Simple_repeat Simple_repeat 2 60 0 320 213 53 43 chr6 56143401 56143495 -126271747 - L1MC4 LINE L1 -1337 6705 6611 2141 62 3 3 chr6 56145057 56145346 -126269896 - L1PA4 LINE L1 -3 6152 5864 2281 81 3 0 chr6 56146740 56147036 -126268206 + AluY SINE Alu 1 297 -14 2098 123 0 0 chr6 56147543 56147843 -126267399 - AluSc SINE Alu -9 300 1 269 311 22 0 chr6 56147988 56148078 -126267164 + L2 LINE L2 3219 3310 -3 215 100 0 25 chr6 56148095 56148135 -126267107 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 319 294 64 0 chr6 56148208 56148317 -126266925 + MIR3 SINE MIR 92 207 -1 282 301 72 36 chr6 56148342 56148425 -126266817 + MER58 DNA MER1_type 1 86 -255 322 196 46 29 chr6 56148493 56148666 -126266576 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 408 98 43 71 chr6 56148769 56148953 -126266289 + (TA)n Simple_repeat Simple_repeat 2 180 0 3732 154 9 11 chr6 56148986 56149733 -126265509 - L1P5 LINE L1 -361 5790 5045 2174 115 7 0 chr6 56149733 56150029 -126265213 - AluSx SINE Alu -14 298 1 3732 154 9 11 chr6 56150029 56150282 -126264960 - L1P5 LINE L1 -1106 5045 4793 243 236 125 0 chr6 56150285 56150357 -126264885 + MER58 DNA MER1_type 2339 2419 -1 697 285 41 0 chr6 56150388 56150560 -126264682 + MER5A DNA MER1_type 11 189 0 1321 190 73 152 chr6 56151179 56151726 -126263516 + MER67D LTR ERV1 2 505 -9 228 384 12 0 chr6 56151977 56152063 -126263179 + L2 LINE L2 3227 3313 0 3924 169 16 11 chr6 56152527 56153289 -126261953 - L1MA6 LINE L1 0 6300 5535 4065 249 71 36 chr6 56153643 56156321 -126258921 - L1ME LINE L1 -710 5736 3154 2180 64 0 7 chr6 56156321 56156602 -126258640 - AluY SINE Alu -6 305 27 4065 249 71 36 chr6 56156602 56156738 -126258504 - L1ME LINE L1 -3292 3154 3024 701 229 0 0 chr6 56156738 56156869 -126258373 - FLAM_A SINE Alu -1 132 2 4065 249 71 36 chr6 56156869 56156988 -126258254 - L1ME LINE L1 -3422 3024 2495 299 217 25 33 chr6 56156991 56157111 -126258131 - L1ME LINE L1 -3981 2445 2327 5623 166 30 18 chr6 56157130 56157451 -126257791 + HSMAR2 DNA Mariner 249 565 -737 1933 157 3 0 chr6 56157451 56157750 -126257492 + AluSx SINE Alu 1 300 -12 5623 166 30 18 chr6 56157750 56158460 -126256782 + HSMAR2 DNA Mariner 565 1292 -10 202 256 158 24 chr6 56158909 56158991 -126256251 - MIR3 SINE MIR -5 203 111 821 234 16 16 chr6 56159057 56159245 -126255997 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chr6 56159720 56159741 -126255501 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr6 56159916 56159960 -126255282 + AT_rich Low_complexity Low_complexity 1 44 0 1610 118 0 0 chr6 56160410 56160631 -126254611 + AluSx SINE Alu 1 221 -91 19496 185 24 11 chr6 56160631 56163167 -126252075 - L1 LINE L1 -3205 4360 1743 2142 135 0 0 chr6 56163167 56163479 -126251763 + AluSx SINE Alu 1 312 0 19496 185 24 11 chr6 56163479 56165232 -126250010 - L1 LINE L1 -5822 1743 14 181 286 18 36 chr6 56165270 56165326 -126249916 + MIR3 SINE MIR 105 159 -49 1858 194 23 5 chr6 56165377 56165774 -126249468 - L1MC1 LINE L1 0 6333 5930 646 245 71 103 chr6 56165855 56166206 -126249036 - MER57A LTR ERV1 0 403 64 1134 278 30 48 chr6 56166246 56166685 -126248557 - MER57A-int LTR ERV1 -392 7145 6715 3237 235 78 73 chr6 56166747 56168124 -126247118 - MER57A-int LTR ERV1 -1494 3442 2581 2763 79 0 0 chr6 56168124 56168490 -126246752 + L1PA8 LINE L1 5805 6170 -2 3237 235 78 73 chr6 56168490 56169162 -126246080 - MER57A-int LTR ERV1 -2355 2581 1914 284 215 15 0 chr6 56169225 56169290 -126245952 - MER34 LTR ERV1 0 542 477 395 195 13 0 chr6 56169316 56169393 -126245849 - MER34 LTR ERV1 -332 210 133 964 215 95 38 chr6 56169541 56169967 -126245275 - MER57A-int LTR ERV1 -2964 1907 1044 2227 118 0 0 chr6 56170070 56170375 -126244867 + AluSg SINE Alu 4 308 -2 682 266 24 39 chr6 56170709 56170972 -126244270 - MER57A-int LTR ERV1 -7238 299 3 496 253 109 99 chr6 56170980 56171375 -126243867 - MER57A LTR ERV1 -4 399 1 255 93 0 0 chr6 56171567 56171610 -126243632 + (CA)n Simple_repeat Simple_repeat 2 44 0 442 258 12 90 chr6 56172418 56172585 -126242657 + MIR SINE MIR 2 155 -107 459 0 0 0 chr6 56173171 56173222 -126242020 + (TG)n Simple_repeat Simple_repeat 2 52 0 437 0 19 0 chr6 56173520 56173573 -126241669 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 21 36 0 0 chr6 56173731 56173759 -126241483 + AT_rich Low_complexity Low_complexity 1 28 0 240 59 0 0 chr6 56175579 56175613 -126239629 + (A)n Simple_repeat Simple_repeat 1 34 0 254 267 17 0 chr6 56175650 56175710 -126239532 + MER5A DNA MER1_type 128 188 -1 182 146 0 24 chr6 56175755 56175796 -126239446 + (TTCTC)n Simple_repeat Simple_repeat 5 44 0 276 323 213 18 chr6 56176266 56176579 -126238663 + L2 LINE L2 2580 2971 -342 266 293 88 33 chr6 56176655 56176836 -126238406 + L2 LINE L2 3098 3288 -25 203 254 99 0 chr6 56176877 56176948 -126238294 - MIR SINE MIR -60 202 125 246 253 36 12 chr6 56177723 56177806 -126237436 - MIR SINE MIR -101 161 77 251 288 47 82 chr6 56178040 56178210 -126237032 + MER5A DNA MER1_type 15 189 0 251 346 10 10 chr6 56178394 56178495 -126236747 + MIR SINE MIR 7 107 -155 649 176 206 0 chr6 56178510 56178646 -126236596 - AluSg/x SINE Alu -12 300 137 293 336 41 20 chr6 56178649 56178795 -126236447 + MIR SINE MIR 111 259 -3 244 105 0 0 chr6 56179145 56179183 -126236059 - L1PA13 LINE L1 -11 6152 6115 189 0 0 0 chr6 56179386 56179407 -126235835 + (TAA)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr6 56179442 56179466 -126235776 + AT_rich Low_complexity Low_complexity 1 24 0 249 33 0 0 chr6 56179992 56180022 -126235220 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1957 213 83 12 chr6 56180604 56181084 -126234158 + L1MA3 LINE L1 5792 6305 0 622 319 38 21 chr6 56181208 56181446 -126233796 + MIR SINE MIR 11 252 -10 271 240 10 80 chr6 56182611 56182711 -126232531 + MER105 DNA DNA 43 135 -69 27 29 0 0 chr6 56183198 56183232 -126232010 + AT_rich Low_complexity Low_complexity 1 34 0 554 313 88 14 chr6 56183814 56184031 -126231211 + MIR SINE MIR 16 248 -14 23 0 0 0 chr6 56185332 56185355 -126229887 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr6 56186010 56186041 -126229201 + AT_rich Low_complexity Low_complexity 1 31 0 24 85 0 0 chr6 56186272 56186331 -126228911 + AT_rich Low_complexity Low_complexity 1 59 0 368 299 25 61 chr6 56186818 56187015 -126228227 + MLT1G LTR MaLR 401 590 0 503 210 31 49 chr6 56187088 56187250 -126227992 + L1ME3 LINE L1 14 172 -6370 254 272 153 78 chr6 56187609 56188461 -126226781 + HAL1 LINE L1 894 1809 -698 251 272 0 0 chr6 56188587 56188668 -126226574 + A-rich Low_complexity Low_complexity 1 81 0 25 0 0 0 chr6 56190246 56190271 -126224971 + AT_rich Low_complexity Low_complexity 1 25 0 313 228 140 26 chr6 56190371 56190485 -126224757 + L1ME3 LINE L1 3398 3524 -3120 329 247 144 34 chr6 56190489 56190780 -126224462 + L1ME3 LINE L1 3536 3858 -2786 963 238 76 0 chr6 56190785 56191062 -126224180 - L1M4 LINE L1 -2413 3733 3436 796 304 123 45 chr6 56191126 56192344 -126222898 + L1ME3 LINE L1 5293 6614 -46 24 67 0 0 chr6 56192946 56192991 -126222251 + AT_rich Low_complexity Low_complexity 1 45 0 26 64 0 0 chr6 56193327 56193374 -126221868 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr6 56193804 56193826 -126221416 + AT_rich Low_complexity Low_complexity 1 22 0 2397 178 33 9 chr6 56194709 56195159 -126220083 - LOR1b LTR ERV1 0 461 1 3982 197 35 1 chr6 56195204 56195949 -126219293 + Tigger7 DNA MER2_type 1 770 -1717 1502 168 144 25 chr6 56195952 56196279 -126218963 + Tigger7 DNA MER2_type 2122 2487 0 186 235 98 0 chr6 56196776 56196827 -126218415 + MIR SINE MIR 84 139 -123 2429 305 91 50 chr6 56197028 56198417 -126216825 - L2 LINE L2 -732 2582 1136 203 182 23 0 chr6 56198580 56198624 -126216618 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 288 81 0 0 chr6 56198771 56198808 -126216434 - U2 snRNA snRNA -151 37 1 1486 199 60 23 chr6 56198900 56199247 -126215995 - MLT1B LTR MaLR -1 389 30 215 313 16 16 chr6 56199317 56199381 -126215861 - L2 LINE L2 -215 3057 2994 1007 261 64 25 chr6 56199460 56199915 -126215327 - MER77 LTR ERV1 -5 600 56 241 200 27 27 chr6 56200173 56200248 -126214994 + (TA)n Simple_repeat Simple_repeat 1 75 0 216 224 17 0 chr6 56202837 56202895 -126212347 + (TA)n Simple_repeat Simple_repeat 1 59 0 198 0 0 0 chr6 56203223 56203245 -126211997 + (CTTTG)n Simple_repeat Simple_repeat 3 24 0 1718 164 143 13 chr6 56253775 56254154 -126161088 + MSTA LTR MaLR 1 428 0 708 290 57 0 chr6 56256232 56256425 -126158817 + MLT2E LTR ERVL 1 204 -424 454 223 27 0 chr6 56256427 56256539 -126158703 + HERVL LTR ERVL 4274 4388 -1266 1087 140 0 0 chr6 56256718 56256875 -126158367 - FRAM SINE Alu -26 150 1 3101 202 85 33 chr6 56256899 56257851 -126157391 + L1MB8 LINE L1 5171 6176 -2 1846 224 72 80 chr6 56258019 56258648 -126156594 - MER21B LTR ERV1 -75 788 165 186 233 67 33 chr6 56259321 56259381 -126155861 - L3 LINE CR1 -200 1377 1316 21 0 0 0 chr6 56259546 56259567 -126155675 + AT_rich Low_complexity Low_complexity 1 21 0 204 111 0 0 chr6 56260268 56260304 -126154938 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr6 56260492 56260521 -126154721 + AT_rich Low_complexity Low_complexity 1 29 0 3001 74 22 17 chr6 56260857 56261274 -126153968 - L1PA6 LINE L1 -7 6147 5729 436 248 68 56 chr6 56261531 56261692 -126153550 - MIR SINE MIR -50 212 50 280 350 29 15 chr6 56261699 56261836 -126153406 - MIR SINE MIR -21 241 103 1332 269 50 17 chr6 56262037 56262454 -126152788 - LTR47B LTR ERVL 0 443 13 249 233 133 42 chr6 56263373 56263493 -126151749 - MIR SINE MIR -1 261 131 673 198 154 0 chr6 56263666 56263828 -126151414 + MER5A DNA MER1_type 2 188 -1 224 217 43 0 chr6 56263851 56263897 -126151345 - L2 LINE L2 -1 3312 3265 23 0 0 0 chr6 56264505 56264528 -126150714 + AT_rich Low_complexity Low_complexity 1 23 0 15395 79 1 1 chr6 56265020 56267033 -126148209 - L1P LINE L1 -4133 2013 1 25 0 0 0 chr6 56267222 56267247 -126147995 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr6 56269629 56269650 -126145592 + AT_rich Low_complexity Low_complexity 1 21 0 229 327 79 40 chr6 56270072 56270274 -126144968 - L2 LINE L2 -871 2443 2234 506 315 83 8 chr6 56271026 56271267 -126143975 + MIR SINE MIR 4 262 0 511 288 137 9 chr6 56272357 56272576 -126142666 - MIR SINE MIR -2 260 14 2257 51 0 41 chr6 56273561 56273878 -126141364 - AluY SINE Alu 0 305 1 2279 133 16 14 chr6 56274563 56274931 -126140311 - L1PB1 LINE L1 -7 6144 5776 181 114 0 45 chr6 56274943 56274987 -126140255 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 3519 100 17 2 chr6 56274994 56275524 -126139718 - L1PB1 LINE L1 -360 5791 5254 226 226 0 0 chr6 56275639 56275692 -126139550 - MIR SINE MIR -71 191 139 246 116 0 0 chr6 56276298 56276341 -126138901 + (CA)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr6 56277346 56277368 -126137874 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2254 62 0 0 chr6 56278056 56278332 -126136910 - AluY SINE Alu -35 276 1 259 333 62 0 chr6 56279805 56279901 -126135341 - MIR SINE MIR -44 218 117 243 152 0 0 chr6 56281725 56281771 -126133471 - AluSx SINE Alu -1 301 256 3146 104 11 0 chr6 56281773 56282217 -126133025 - MLT2A2 LTR ERVL -2 451 3 1547 170 15 4 chr6 56282217 56282476 -126132766 - AluSx SINE Alu -50 262 1 28 0 0 0 chr6 56283226 56283254 -126131988 + AT_rich Low_complexity Low_complexity 1 28 0 2297 110 20 59 chr6 56283924 56284266 -126130976 + THE1C LTR MaLR 1 328 -47 2150 104 14 0 chr6 56284266 56284555 -126130687 - AluSc SINE Alu -13 296 4 2297 110 20 59 chr6 56284555 56284602 -126130640 + THE1C LTR MaLR 328 375 0 10048 121 29 20 chr6 56284602 56284754 -126130488 + THE1C-int LTR MaLR 1 150 -1430 2563 119 3 11 chr6 56284754 56285132 -126130110 - THE1C LTR MaLR 0 375 1 10048 121 29 20 chr6 56285132 56286545 -126128697 + THE1C-int LTR MaLR 150 1580 0 711 144 51 0 chr6 56286545 56286663 -126128579 + THE1C LTR MaLR 1 124 -251 273 322 11 0 chr6 56286766 56286853 -126128389 - LTR50 LTR ERVL -214 581 494 540 289 144 16 chr6 56286899 56287155 -126128087 - LTR50 LTR ERVL -506 289 1 338 274 85 46 chr6 56287179 56287405 -126127837 - L1MDa LINE L1 -4711 1504 1147 243 0 0 0 chr6 56288684 56288711 -126126531 + (CA)n Simple_repeat Simple_repeat 1 27 0 226 276 118 26 chr6 56288929 56289005 -126126237 + MIR3 SINE MIR 87 169 -39 312 133 36 12 chr6 56289905 56289988 -126125254 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 324 0 0 0 chr6 56290231 56290267 -126124975 + (TA)n Simple_repeat Simple_repeat 1 36 0 325 132 0 29 chr6 56290388 56290456 -126124786 + (TA)n Simple_repeat Simple_repeat 1 66 0 249 211 11 63 chr6 56290458 56290553 -126124689 + L1MC4 LINE L1 6614 6703 -1339 222 37 0 0 chr6 56290553 56290580 -126124662 + (TA)n Simple_repeat Simple_repeat 1 27 0 579 265 108 15 chr6 56291256 56291524 -126123718 - L1ME3A LINE L1 -135 6035 5743 2258 260 98 36 chr6 56291769 56292769 -126122473 - L1MDa LINE L1 -5222 1174 102 2263 55 6 73 chr6 56292769 56293097 -126122145 - AluY SINE Alu -5 306 1 2258 260 98 36 chr6 56293097 56293169 -126122073 - L1MDa LINE L1 -6294 102 36 303 93 0 0 chr6 56294152 56294195 -126121047 + (TA)n Simple_repeat Simple_repeat 1 43 0 180 0 0 0 chr6 56294194 56294214 -126121028 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 23 0 0 0 chr6 56295124 56295147 -126120095 + AT_rich Low_complexity Low_complexity 1 23 0 366 281 44 7 chr6 56295222 56295357 -126119885 + L1ME LINE L1 5525 5664 -457 21 0 0 0 chr6 56296651 56296672 -126118570 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 56296855 56296878 -126118364 + AT_rich Low_complexity Low_complexity 1 23 0 413 286 71 42 chr6 56296884 56297052 -126118190 - MIR3 SINE MIR -16 192 20 187 152 15 30 chr6 56297329 56297395 -126117847 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 22 56 0 0 chr6 56298801 56298837 -126116405 + AT_rich Low_complexity Low_complexity 1 36 0 233 306 37 52 chr6 56300798 56300835 -126114407 + MIR SINE MIR 60 96 -166 487 280 47 52 chr6 56300835 56301046 -126114196 + MER63A DNA MER1_type 1 210 0 233 306 37 52 chr6 56301046 56301142 -126114100 + MIR SINE MIR 96 191 -71 319 338 176 29 chr6 56301241 56301866 -126113376 + L3 LINE CR1 670 1386 -191 1953 136 7 10 chr6 56302435 56302745 -126112497 - AluJb SINE Alu -3 309 1 2086 150 9 3 chr6 56304396 56304729 -126110513 - PABL_A LTR ERV1 0 660 326 264 319 9 71 chr6 56304830 56304943 -126110299 + MER5A DNA MER1_type 81 186 -3 1280 315 120 14 chr6 56305777 56306335 -126108907 - MLT2E LTR ERVL -2 626 10 200 397 8 24 chr6 56306404 56306540 -126108702 + MIR SINE MIR 9 139 -69 5327 166 32 42 chr6 56306735 56306974 -126108268 + L1PA15 LINE L1 4141 4381 -1784 2222 93 21 0 chr6 56306974 56307263 -126107979 + AluSc SINE Alu 1 295 -14 5327 166 32 42 chr6 56307263 56307931 -126107311 + L1PA15 LINE L1 4381 5054 -1111 1937 180 9 3 chr6 56307931 56308264 -126106978 - MER1B DNA MER1_type -2 335 1 5327 166 32 42 chr6 56308264 56309239 -126106003 + L1PA15 LINE L1 5054 6160 -5 417 241 0 132 chr6 56309408 56309582 -126105660 - MER5B DNA MER1_type -20 158 8 21 36 0 0 chr6 56310246 56310274 -126104968 + AT_rich Low_complexity Low_complexity 1 28 0 303 288 8 68 chr6 56310585 56310717 -126104525 - MIR SINE MIR -21 241 118 426 132 0 0 chr6 56310799 56310875 -126104367 + (TCCA)n Simple_repeat Simple_repeat 1 76 0 257 391 70 19 chr6 56311071 56311286 -126103956 + LTR33 LTR ERVL 91 316 -207 356 217 58 80 chr6 56311302 56311440 -126103802 + Charlie8 DNA MER1_type 70 204 -2213 22 35 0 0 chr6 56312054 56312083 -126103159 + AT_rich Low_complexity Low_complexity 1 29 0 358 211 32 89 chr6 56312859 56312982 -126102260 + Charlie8 DNA MER1_type 100 215 -2202 22 35 0 0 chr6 56313596 56313625 -126101617 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 56316085 56316122 -126099120 + AT_rich Low_complexity Low_complexity 1 37 0 1751 24 0 0 chr6 56317036 56317246 -126097996 + L1P LINE L1 4922 5131 -1015 7622 243 63 53 chr6 56318611 56320119 -126095123 - L1MEc LINE L1 -1022 5935 4443 564 151 9 0 chr6 56320119 56320225 -126095017 - FLAM_C SINE Alu 0 143 37 7622 243 63 53 chr6 56320225 56321784 -126093458 - L1MEc LINE L1 -2514 4443 2754 3544 166 11 3 chr6 56321784 56322400 -126092842 - L1PA16 LINE L1 -9 6157 5537 7622 243 63 53 chr6 56322400 56322516 -126092726 - L1MEc LINE L1 -4203 2754 2641 23 0 0 0 chr6 56322854 56322877 -126092365 + AT_rich Low_complexity Low_complexity 1 23 0 1759 283 59 40 chr6 56322886 56323924 -126091318 - L1MEc LINE L1 -4590 2369 1312 2648 301 22 39 chr6 56323935 56324884 -126090358 - L1MEc LINE L1 -5916 943 11 200 219 24 0 chr6 56327798 56327839 -126087403 + L2 LINE L2 3263 3304 -9 947 252 17 21 chr6 56328203 56328437 -126086805 + LTR40a LTR ERVL 287 519 0 291 207 0 0 chr6 56328455 56328513 -126086729 - MLT1G1 LTR MaLR -7 588 531 2056 210 31 72 chr6 56328514 56329108 -126086134 + L1MC/D LINE L1 4782 5342 -1004 1796 68 0 24 chr6 56329108 56329356 -126085886 + AluY SINE Alu 1 242 -69 2056 210 31 72 chr6 56329356 56329608 -126085634 + L1MC/D LINE L1 5342 5603 -743 333 0 0 0 chr6 56329647 56329684 -126085558 + (CA)n Simple_repeat Simple_repeat 1 37 0 470 301 45 66 chr6 56330118 56330387 -126084855 + MIR SINE MIR 9 262 0 262 279 0 0 chr6 56330990 56331058 -126084184 + L2 LINE L2 3246 3313 0 241 143 54 0 chr6 56331473 56331529 -126083713 + (CATA)n Simple_repeat Simple_repeat 4 62 0 23 33 0 0 chr6 56331664 56331694 -126083548 + AT_rich Low_complexity Low_complexity 1 30 0 785 245 120 0 chr6 56333103 56333303 -126081939 - MER58A DNA MER1_type 0 224 1 1900 163 3 0 chr6 56333424 56333731 -126081511 + AluJo SINE Alu 1 308 -4 2197 104 3 0 chr6 56334759 56335057 -126080185 + AluSp SINE Alu 1 299 -14 386 314 73 48 chr6 56335594 56335992 -126079250 - L2 LINE L2 -101 3212 2805 1802 155 11 0 chr6 56336338 56336622 -126078620 - AluJb SINE Alu -3 309 23 1058 72 0 0 chr6 56337804 56337943 -126077299 + L1PA3 LINE L1 6014 6152 -3 23 54 0 0 chr6 56337943 56337980 -126077262 + AT_rich Low_complexity Low_complexity 1 37 0 257 0 0 29 chr6 56337980 56338014 -126077228 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr6 56338694 56338715 -126076527 + AT_rich Low_complexity Low_complexity 1 21 0 942 158 248 17 chr6 56338734 56338996 -126076246 - AluSg SINE Alu 0 300 1 28 48 0 0 chr6 56339412 56339454 -126075788 + AT_rich Low_complexity Low_complexity 1 42 0 225 355 43 43 chr6 56339544 56339730 -126075512 + MIR SINE MIR 3 188 -74 205 290 170 0 chr6 56341397 56341497 -126073745 + MIR SINE MIR 87 203 -59 228 111 0 0 chr6 56341789 56341825 -126073417 + (TG)n Simple_repeat Simple_repeat 1 36 0 7330 157 27 9 chr6 56342993 56345244 -126069998 - L1MA8 LINE L1 -1 6290 3997 234 357 31 62 chr6 56345558 56345687 -126069555 + L2 LINE L2 3134 3258 -14 944 108 0 29 chr6 56345800 56345939 -126069303 + AluSq SINE Alu 47 181 -132 282 56 0 0 chr6 56346524 56346560 -126068682 + (CA)n Simple_repeat Simple_repeat 2 37 0 382 285 48 56 chr6 56347214 56347397 -126067845 - MIR3 SINE MIR -28 180 3 189 288 17 0 chr6 56347483 56347542 -126067700 - MIR3 SINE MIR -54 154 95 21 0 0 0 chr6 56349569 56349590 -126065652 + AT_rich Low_complexity Low_complexity 1 21 0 29 81 0 27 chr6 56350527 56350638 -126064604 + AT_rich Low_complexity Low_complexity 1 108 0 1599 163 62 0 chr6 56350638 56350914 -126064328 + AluY SINE Alu 1 293 -18 492 18 0 0 chr6 56351534 56351591 -126063651 + (TG)n Simple_repeat Simple_repeat 2 58 0 388 378 61 11 chr6 56351607 56351885 -126063357 - HAL1 LINE L1 -790 1717 1426 498 323 56 10 chr6 56352662 56352857 -126062385 + MLT2E LTR ERVL 1 204 -424 2496 268 46 14 chr6 56352859 56353775 -126061467 + ERVL-E LTR ERVL 4272 5235 -250 609 200 11 84 chr6 56353776 56353966 -126061276 + MER96B DNA MER1_type? 1 176 -241 898 267 93 46 chr6 56354045 56354574 -126060668 + MLT2E LTR ERVL 1 628 0 1806 268 19 28 chr6 56354578 56355149 -126060093 - L1 LINE L1 -3200 2946 2381 4990 168 31 33 chr6 56355194 56356787 -126058455 - L1PB3 LINE L1 -2 7214 5623 3137 108 16 0 chr6 56356787 56357232 -126058010 - MLT2A2 LTR ERVL 0 453 2 11428 88 12 4 chr6 56357233 56357658 -126057584 - HERVL-A2 LTR ERVL 0 5654 5234 261 0 0 0 chr6 56357658 56357687 -126057555 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 11428 88 12 4 chr6 56357687 56359296 -126055946 - HERVL-A2 LTR ERVL -420 5234 3518 1654 244 152 26 chr6 56359302 56360504 -126054738 - L1PB3 LINE L1 -3261 3947 2593 2026 188 34 30 chr6 56360525 56361070 -126054172 - MLT2A2 LTR ERVL -4 550 1 1851 235 27 94 chr6 56361086 56362028 -126053214 - L1PB3 LINE L1 -4652 2557 1695 230 347 36 36 chr6 56362195 56362391 -126052851 - L1PB3 LINE L1 -5860 1349 1154 1023 357 59 20 chr6 56362490 56363218 -126052024 - L1PB3 LINE L1 -6320 889 69 2333 87 0 0 chr6 56363452 56363750 -126051492 - AluY SINE Alu -10 301 4 297 0 0 0 chr6 56364939 56364972 -126050270 + (CA)n Simple_repeat Simple_repeat 2 34 0 20902 43 3 0 chr6 56366019 56370188 -126045054 - L1PA4 LINE L1 0 6155 1977 1805 73 0 0 chr6 56371625 56371897 -126043345 + L1PA7 LINE L1 5909 6180 0 269 287 0 21 chr6 56373213 56373307 -126041935 + MIR SINE MIR 124 215 -47 297 369 45 25 chr6 56373375 56373619 -126041623 - L2 LINE L2 -729 2585 2337 324 376 168 10 chr6 56373799 56374387 -126040855 - L2 LINE L2 -352 2962 2282 356 172 17 0 chr6 56374387 56374445 -126040797 - Tigger5 DNA MER2_type 0 2323 2265 2045 134 7 3 chr6 56374446 56374753 -126040489 - AluSx SINE Alu -4 308 1 365 222 14 0 chr6 56374758 56374830 -126040412 + Tigger5 DNA MER2_type 2248 2320 -3 329 250 40 0 chr6 56374830 56374905 -126040337 - Tigger5 DNA MER2_type -2245 78 1 253 316 53 113 chr6 56374905 56375130 -126040112 - L2 LINE L2 -1029 2285 2099 1645 110 0 4 chr6 56375130 56375358 -126039884 + AluY SINE Alu 79 305 -6 253 316 53 113 chr6 56375358 56375584 -126039658 - L2 LINE L2 -1215 2099 1861 509 259 171 22 chr6 56375948 56376176 -126039066 - MIR SINE MIR 0 262 1 2527 62 3 3 chr6 56376446 56376770 -126038472 - L1PA5 LINE L1 -8 6146 5823 2100 33 0 0 chr6 56376771 56377087 -126038155 + L1P2 LINE L1 5137 5452 -702 180 169 15 31 chr6 56377364 56377429 -126037813 + GA-rich Low_complexity Low_complexity 1 64 0 2173 88 0 30 chr6 56377880 56378177 -126037065 + AluY SINE Alu 1 288 -23 234 0 0 0 chr6 56378188 56378214 -126037028 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 286 411 78 38 chr6 56378574 56378656 -126036586 - L2 LINE L2 -12 3260 3183 2084 157 0 0 chr6 56378656 56378968 -126036274 + AluSx SINE Alu 1 312 0 286 411 78 38 chr6 56378968 56379311 -126035931 - L2 LINE L2 -89 3183 2818 311 370 61 68 chr6 56379908 56379964 -126035278 + L2 LINE L2 2405 2460 -812 1880 166 26 37 chr6 56379964 56380343 -126034899 - THE1C LTR MaLR 0 375 1 311 370 61 68 chr6 56380343 56381153 -126034089 + L2 LINE L2 2460 3268 -4 180 431 7 15 chr6 56381764 56381901 -126033341 - L2 LINE L2 -952 2362 2227 2357 231 44 47 chr6 56381907 56382657 -126032585 + L1MB7 LINE L1 5428 6175 -9 2670 73 3 3 chr6 56382781 56383135 -126032107 + THE1A LTR MaLR 1 354 -1 2129 63 4 4 chr6 56383135 56383404 -126031838 + AluY SINE Alu 1 269 -42 207 88 0 0 chr6 56383409 56383443 -126031799 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1985 128 7 40 chr6 56383586 56383890 -126031352 + AluSx SINE Alu 1 294 -18 22 56 0 0 chr6 56384101 56384137 -126031105 + AT_rich Low_complexity Low_complexity 1 36 0 346 241 0 0 chr6 56384428 56384506 -126030736 + MIR SINE MIR 72 148 -62 2411 181 46 49 chr6 56384645 56384728 -126030514 + L1MA4 LINE L1 4720 4802 -1344 1994 147 3 0 chr6 56384728 56385027 -126030215 + AluY SINE Alu 1 300 -11 2411 181 46 49 chr6 56385027 56385102 -126030140 + L1MA4 LINE L1 4802 4876 -1270 2361 111 0 42 chr6 56385102 56385480 -126029762 - L1PA10 LINE L1 0 6168 5807 2411 181 46 49 chr6 56385480 56385933 -126029309 + L1MA4 LINE L1 4876 5330 -816 3110 103 11 0 chr6 56385934 56386381 -126028861 + L1PA10 LINE L1 5706 6157 -11 5354 162 12 8 chr6 56386512 56387487 -126027755 + L1MA4 LINE L1 5316 6294 -6 360 208 62 141 chr6 56387753 56387945 -126027297 + L1MC4 LINE L1 7849 8025 -17 279 0 0 0 chr6 56388904 56388935 -126026307 + (T)n Simple_repeat Simple_repeat 1 31 0 2171 125 3 0 chr6 56389173 56389468 -126025774 + AluSq SINE Alu 1 296 -17 2316 97 0 3 chr6 56389604 56389914 -126025328 + AluSq SINE Alu 1 309 -4 1247 228 26 45 chr6 56390262 56390639 -126024603 - MLT1A2 LTR MaLR -4 370 1 807 364 72 16 chr6 56390641 56391270 -126023972 - L3 LINE CR1 -593 984 321 21 0 0 0 chr6 56391427 56391448 -126023794 + AT_rich Low_complexity Low_complexity 1 21 0 2466 57 0 0 chr6 56394365 56394662 -126020580 + AluY SINE Alu 1 297 -14 808 348 77 19 chr6 56394786 56395409 -126019833 - L2 LINE L2 -472 2842 2184 1371 209 22 4 chr6 56395596 56395864 -126019378 + AluJo SINE Alu 9 281 -31 224 346 71 24 chr6 56397162 56397289 -126017953 - MIR3 SINE MIR -63 145 13 1968 144 0 7 chr6 56397958 56398250 -126016992 - AluSx SINE Alu -22 290 1 24 0 0 0 chr6 56398747 56398771 -126016471 + AT_rich Low_complexity Low_complexity 1 24 0 2037 139 150 5 chr6 56399072 56399446 -126015796 - MSTA LTR MaLR 0 428 1 735 226 61 5 chr6 56399448 56399747 -126015495 + MLT1A1 LTR MaLR 1 359 -6 1360 260 56 37 chr6 56400110 56400591 -126014651 - MLT1J LTR MaLR 0 511 22 413 347 19 50 chr6 56401804 56402066 -126013176 + MLT1K LTR MaLR 325 578 -10 413 301 45 0 chr6 56402346 56402479 -126012763 - MIR SINE MIR -8 254 116 26 30 0 0 chr6 56402882 56402915 -126012327 + AT_rich Low_complexity Low_complexity 1 33 0 2013 146 44 14 chr6 56403398 56403762 -126011480 + THE1C LTR MaLR 1 375 0 673 254 10 71 chr6 56403875 56404072 -126011170 + MER58A DNA MER1_type 1 185 -39 1030 266 43 87 chr6 56404156 56404719 -126010523 - MER68 LTR ERV1 -19 543 6 254 246 0 0 chr6 56405002 56405059 -126010183 + MLT1K LTR MaLR 191 247 -341 2186 128 0 0 chr6 56405243 56405541 -126009701 + AluSq SINE Alu 1 298 -15 443 278 19 9 chr6 56405747 56405869 -126009373 - MIR SINE MIR -63 145 33 36 40 0 0 chr6 56407141 56407191 -126008051 + AT_rich Low_complexity Low_complexity 1 50 0 490 263 0 58 chr6 56407203 56407374 -126007868 + MER112 DNA MER1_type 79 239 -21 525 308 69 49 chr6 56407632 56407937 -126007305 + MLT1J2 LTR MaLR 139 449 -1 32 57 0 0 chr6 56409326 56409379 -126005863 + AT_rich Low_complexity Low_complexity 1 53 0 1222 214 78 19 chr6 56409976 56410247 -126004995 - AluJo SINE Alu -23 289 3 306 311 40 119 chr6 56410495 56410849 -126004393 - L1MEd LINE L1 -4625 1759 1434 453 256 65 29 chr6 56410877 56411123 -126004119 - L1MEd LINE L1 -4867 1505 1251 231 277 96 32 chr6 56411487 56411581 -126003661 - L1MEd LINE L1 -5478 894 795 391 306 141 79 chr6 56411628 56412060 -126003182 - L1MEd LINE L1 -5650 722 264 2345 230 86 39 chr6 56412229 56413228 -126002014 + L1ME2 LINE L1 5127 6164 0 243 361 59 20 chr6 56414290 56414492 -126000750 + L2 LINE L2 2549 2758 -556 203 236 19 19 chr6 56414725 56414831 -126000411 + GA-rich Low_complexity Low_complexity 3 108 0 185 214 24 0 chr6 56415133 56415175 -126000067 + L2 LINE L2 2904 2946 -326 * 369 335 94 6 chr6 56415172 56415342 -125999900 + MER91B DNA MER1_type 5 189 -1 636 300 152 12 chr6 56415355 56415678 -125999564 + L2 LINE L2 2941 3308 -5 229 258 0 0 chr6 56415696 56415758 -125999484 + GA-rich Low_complexity Low_complexity 3 64 0 990 138 44 12 chr6 56415822 56415982 -125999260 + FRAM SINE Alu 1 165 -1 349 351 195 3 chr6 56416703 56417036 -125998206 + L2 LINE L2 2473 2869 -445 397 256 19 83 chr6 56417313 56417469 -125997773 + MIR SINE MIR 100 245 -17 2180 113 7 7 chr6 56418045 56418345 -125996897 + AluSp SINE Alu 1 300 -13 2329 108 0 0 chr6 56419502 56419807 -125995435 + AluSx SINE Alu 1 305 -7 332 252 99 54 chr6 56420240 56420351 -125994891 - MLT1L LTR MaLR -332 283 168 229 323 0 0 chr6 56420465 56420527 -125994715 + MLT1K LTR MaLR 185 246 -342 26 74 0 0 chr6 56420706 56420760 -125994482 + AT_rich Low_complexity Low_complexity 1 54 0 1622 206 113 38 chr6 56421055 56421525 -125993717 - MLT1D LTR MaLR 0 505 1 311 304 59 52 chr6 56422237 56422372 -125992870 - L2 LINE L2 -18 3295 3160 216 67 0 0 chr6 56422769 56422799 -125992443 + (CA)n Simple_repeat Simple_repeat 2 31 0 443 323 20 35 chr6 56423624 56423822 -125991420 - MIR SINE MIR -39 223 29 915 216 64 15 chr6 56424270 56424474 -125990768 + MER20 DNA MER1_type 6 219 0 374 295 64 12 chr6 56424690 56424863 -125990379 - L1ME LINE L1 -366 5755 5574 475 241 108 32 chr6 56426297 56426455 -125988787 - MIR3 SINE MIR -1 207 38 431 266 188 0 chr6 56427315 56427443 -125987799 + MER5A DNA MER1_type 32 183 -6 21 0 0 0 chr6 56427594 56427615 -125987627 + AT_rich Low_complexity Low_complexity 1 21 0 362 376 38 19 chr6 56427750 56427960 -125987282 - MIR SINE MIR 0 262 49 438 290 112 70 chr6 56428251 56428723 -125986519 + L1ME4a LINE L1 5613 6104 -17 21 57 0 0 chr6 56430259 56430294 -125984948 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 56430650 56430671 -125984571 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr6 56432547 56432576 -125982666 + (A)n Simple_repeat Simple_repeat 1 29 0 229 260 14 14 chr6 56433169 56433242 -125982000 + (TA)n Simple_repeat Simple_repeat 2 74 0 22 56 0 0 chr6 56433707 56433743 -125981499 + AT_rich Low_complexity Low_complexity 1 36 0 2170 102 0 3 chr6 56434872 56435175 -125980067 + AluSq SINE Alu 1 302 -11 8163 218 96 44 chr6 56435178 56437741 -125977501 + L1MD1 LINE L1 26 2716 -3824 1431 204 3 40 chr6 56437754 56438053 -125977189 + AluJo SINE Alu 6 293 -19 241 263 0 0 chr6 56438088 56438145 -125977097 + MER20 DNA MER1_type 160 216 -3 807 217 80 29 chr6 56438177 56438453 -125976789 + L1MC4 LINE L1 7753 8042 0 2239 263 29 11 chr6 56438473 56439229 -125976013 + L1MD1 LINE L1 2722 3491 -3049 * 42014 54 8 0 chr6 56439215 56445319 -125969923 + L1PA4 LINE L1 1 6147 -8 5037 228 68 60 chr6 56445349 56446449 -125968793 + L1MD1 LINE L1 3467 4557 -2079 2857 3 0 0 chr6 56446449 56446760 -125968482 - AluYa5 SINE Alu 0 311 1 5037 228 68 60 chr6 56446760 56448645 -125966597 + L1MD1 LINE L1 4557 6467 -169 9687 78 8 1 chr6 56448646 56449968 -125965274 + L1P LINE L1 3906 5236 -910 6663 74 7 3 chr6 56449968 56451026 -125964216 + L1PA7 LINE L1 5087 6152 -2 1050 147 0 0 chr6 56451026 56451189 -125964053 + L1MD1 LINE L1 6455 6617 -19 503 194 0 0 chr6 56451627 56451720 -125963522 + L1MC/D LINE L1 5530 5622 -620 303 49 0 0 chr6 56453214 56453255 -125961987 + (TAA)n Simple_repeat Simple_repeat 1 41 0 906 363 131 18 chr6 56453399 56454380 -125960862 + L2 LINE L2 2186 3272 0 22 0 0 0 chr6 56455262 56455284 -125959958 + AT_rich Low_complexity Low_complexity 1 22 0 226 301 14 14 chr6 56455659 56455732 -125959510 - MIR SINE MIR -113 149 77 26 0 0 0 chr6 56455911 56455937 -125959305 + AT_rich Low_complexity Low_complexity 1 26 0 560 237 26 26 chr6 56457127 56457283 -125957959 + MIR SINE MIR 14 169 -93 1077 220 85 61 chr6 56457526 56457999 -125957243 - L1MC5 LINE L1 -228 7733 7250 424 184 39 0 chr6 56458057 56458160 -125957082 - L1MA8 LINE L1 -35 6256 6150 1381 201 74 72 chr6 56458172 56458699 -125956543 - L1MC5 LINE L1 -722 7239 6712 595 249 141 43 chr6 56458778 56459148 -125956094 - L1MC4 LINE L1 -153 7889 7484 21 57 0 0 chr6 56459559 56459594 -125955648 + AT_rich Low_complexity Low_complexity 1 35 0 431 98 0 0 chr6 56459940 56460001 -125955241 - Alu SINE Alu -257 61 1 274 316 127 42 chr6 56460013 56460225 -125955017 + MIR SINE MIR 32 261 -1 13674 206 44 32 chr6 56460640 56466006 -125949236 + L1MA4A LINE L1 140 5618 -1387 2369 80 0 0 chr6 56466006 56466305 -125948937 + AluY SINE Alu 1 299 -12 13674 206 44 32 chr6 56466305 56467590 -125947652 + L1MA4A LINE L1 5618 6886 -119 898 208 0 2 chr6 56467591 56467827 -125947415 + AluJb SINE Alu 3 287 -25 529 151 8 79 chr6 56467830 56467956 -125947286 + L1MA4A LINE L1 6874 6990 -15 24 0 0 0 chr6 56468120 56468144 -125947098 + AT_rich Low_complexity Low_complexity 1 24 0 197 272 200 19 chr6 56468190 56468273 -125946969 - MER5B DNA MER1_type -7 171 104 234 0 0 0 chr6 56468273 56468299 -125946943 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 197 272 200 19 chr6 56468299 56468349 -125946893 - MER5B DNA MER1_type -74 104 4 216 97 0 0 chr6 56468479 56468510 -125946732 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 615 396 63 14 chr6 56468969 56469489 -125945753 - L2 LINE L2 -1590 1724 1179 1298 139 5 5 chr6 56469495 56469697 -125945545 - AluSg/x SINE Alu -10 300 99 385 239 0 23 chr6 56470072 56470160 -125945082 + MIR SINE MIR 79 164 -98 198 231 39 0 chr6 56470284 56470336 -125944906 - MIR SINE MIR -118 144 91 28 29 0 0 chr6 56470379 56470414 -125944828 + AT_rich Low_complexity Low_complexity 1 35 0 433 299 84 28 chr6 56470463 56470714 -125944528 + HAL1 LINE L1 1489 1753 -754 370 266 53 21 chr6 56471345 56471604 -125943638 + HAL1b LINE L1 746 2403 -104 288 264 114 47 chr6 56471632 56471825 -125943417 + HAL1 LINE L1 2276 2481 -26 22 0 0 0 chr6 56471850 56471872 -125943370 + AT_rich Low_complexity Low_complexity 1 22 0 617 255 132 54 chr6 56472056 56472360 -125942882 + MLT1J LTR MaLR 1 290 -156 857 274 28 20 chr6 56472877 56473132 -125942110 + MIR SINE MIR 6 262 0 23 33 0 0 chr6 56473653 56473683 -125941559 + AT_rich Low_complexity Low_complexity 1 30 0 676 289 88 40 chr6 56474177 56474530 -125940712 - MLT1L LTR MaLR -27 588 219 2276 104 3 0 chr6 56476174 56476481 -125938761 + AluY SINE Alu 1 308 -3 277 333 60 18 chr6 56476493 56476661 -125938581 + MER5A DNA MER1_type 8 182 -7 1876 148 30 3 chr6 56476806 56477103 -125938139 - AluJb SINE Alu -7 305 1 270 354 71 9 chr6 56477125 56477238 -125938004 + L2 LINE L2 3144 3263 -9 264 77 0 0 chr6 56479057 56479096 -125936146 + (TA)n Simple_repeat Simple_repeat 1 39 0 2130 101 0 0 chr6 56479105 56479382 -125935860 - AluSg SINE Alu -30 280 4 491 317 35 83 chr6 56479512 56479616 -125935626 - L1MC/D LINE L1 -1988 5820 5713 1309 195 120 10 chr6 56479616 56479924 -125935318 + MER2 DNA MER2_type 3 344 0 491 317 35 83 chr6 56479924 56480279 -125934963 - L1MC/D LINE L1 -2095 5713 5383 2406 87 0 0 chr6 56480400 56480699 -125934543 + AluSq SINE Alu 2 300 -13 195 42 0 0 chr6 56480699 56480723 -125934519 + (TG)n Simple_repeat Simple_repeat 2 25 0 1544 185 28 11 chr6 56480753 56480918 -125934324 - AluJo SINE Alu -20 292 118 216 0 0 0 chr6 56480918 56480942 -125934300 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1544 185 28 11 chr6 56480942 56481063 -125934179 - AluJo SINE Alu -194 118 1 482 252 0 10 chr6 56481244 56481347 -125933895 - L2 LINE L2 -8 3305 3204 216 97 0 0 chr6 56482625 56482656 -125932586 + (TC)n Simple_repeat Simple_repeat 2 32 0 1385 146 5 5 chr6 56483995 56484207 -125931035 + AluSx SINE Alu 1 212 -100 215 132 38 19 chr6 56485138 56485191 -125930051 + A-rich Low_complexity Low_complexity 2 55 0 24 85 0 0 chr6 56485281 56485340 -125929902 + AT_rich Low_complexity Low_complexity 1 59 0 1816 213 34 24 chr6 56485566 56485983 -125929259 - MER82 DNA MER2_type -232 421 1 265 301 161 49 chr6 56487671 56487814 -125927428 - MIR3 SINE MIR -19 189 31 2237 92 7 7 chr6 56487853 56488147 -125927095 + AluSc SINE Alu 1 294 -15 803 273 6 0 chr6 56488169 56488352 -125926890 - MER5A DNA MER1_type -5 184 1 328 343 119 66 chr6 56490584 56491461 -125923781 - L2 LINE L2 -1344 1970 1048 2182 78 3 3 chr6 56491546 56491842 -125923400 + L1PB1 LINE L1 5855 6150 -1 866 291 52 16 chr6 56492489 56492798 -125922444 - MER110 LTR ERV1 -5 486 167 25 0 0 0 chr6 56494290 56494315 -125920927 + AT_rich Low_complexity Low_complexity 1 25 0 2186 99 0 3 chr6 56494880 56495173 -125920069 - AluSc SINE Alu -17 292 1 450 34 0 0 chr6 56495385 56495444 -125919798 + L1PA6 LINE L1 6096 6154 0 1679 170 3 35 chr6 56495457 56495769 -125919473 + AluJo SINE Alu 3 304 -8 21 0 0 0 chr6 56496272 56496293 -125918949 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 56496553 56496576 -125918666 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 533 281 93 48 chr6 56497642 56498236 -125917006 + L1ME4a LINE L1 5310 5927 -194 232 192 41 41 chr6 56498239 56498312 -125916930 + L1ME4a LINE L1 5975 6047 -74 5667 111 31 29 chr6 56498465 56498673 -125916569 + L1PA13 LINE L1 5127 5333 -830 1587 60 0 28 chr6 56498673 56498891 -125916351 - L1PA5 LINE L1 -2 6152 5941 5667 111 31 29 chr6 56498891 56499717 -125915525 + L1PA13 LINE L1 5333 6163 0 263 316 0 0 chr6 56500472 56500548 -125914694 + MER117 DNA MER1_type 11 86 -111 189 268 54 0 chr6 56500866 56500922 -125914320 - L2 LINE L2 0 3313 3255 198 348 0 14 chr6 56501959 56502028 -125913214 + MIR3 SINE MIR 96 163 -45 970 191 59 187 chr6 56502429 56503124 -125912118 + L1MC4 LINE L1 7437 8042 0 1311 170 4 32 chr6 56503195 56503442 -125911800 + AluJo SINE Alu 47 286 -26 411 56 0 0 chr6 56503442 56503496 -125911746 + (TA)n Simple_repeat Simple_repeat 2 55 0 413 328 92 48 chr6 56503615 56503886 -125911356 + MER102b DNA MER1_type 10 292 -49 287 273 0 0 chr6 56504026 56504092 -125911150 + MER102b DNA MER1_type 265 330 0 733 256 64 17 chr6 56504511 56504752 -125910490 - MIR SINE MIR 0 262 16 440 269 214 7 chr6 56506051 56506196 -125909046 - MER5A DNA MER1_type -6 183 9 285 330 35 9 chr6 56506196 56506311 -125908931 - MIR3 SINE MIR -40 168 51 184 211 143 91 chr6 56506285 56506460 -125908782 + MIR SINE MIR 12 195 -67 * 207 316 104 24 chr6 56506892 56507069 -125908173 + MIR SINE MIR 41 232 -30 201 246 0 53 chr6 56508071 56508128 -125907114 + CT-rich Low_complexity Low_complexity 3 56 0 190 277 0 0 chr6 56508596 56508643 -125906599 + MIR SINE MIR 211 257 -5 673 158 20 86 chr6 56508716 56508868 -125906374 + MER20B DNA MER1_type 1 142 -77 2463 50 0 0 chr6 56509121 56509419 -125905823 + AluY SINE Alu 1 298 -13 324 235 103 73 chr6 56509502 56509638 -125905604 + MIR SINE MIR 48 187 -75 210 71 0 0 chr6 56509638 56509666 -125905576 + (TA)n Simple_repeat Simple_repeat 2 29 0 492 279 59 3 chr6 56509958 56510151 -125905091 + MLT1I LTR MaLR 195 446 -4 234 350 20 0 chr6 56511412 56511512 -125903730 + MER20B DNA MER1_type 1 102 -681 975 262 92 37 chr6 56511558 56512077 -125903165 + MER20B DNA MER1_type 223 770 -13 318 277 51 96 chr6 56513725 56513902 -125901340 + L2 LINE L2 2616 2784 -530 956 209 82 116 chr6 56514115 56514493 -125900749 - MLT1A1 LTR MaLR 0 365 1 254 358 50 17 chr6 56514602 56514722 -125900520 + L2 LINE L2 3149 3272 0 303 381 8 0 chr6 56515419 56515545 -125899697 + L2 LINE L2 3186 3312 -1 188 340 83 35 chr6 56516200 56516344 -125898898 - L2 LINE L2 -1199 2115 1965 381 93 0 0 chr6 56517487 56517541 -125897701 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 503 282 8 0 chr6 56518101 56518232 -125897010 - MER94 DNA DNA -1 133 2 2815 200 50 22 chr6 56518472 56518686 -125896556 + L1MB8 LINE L1 5539 5746 -432 1260 190 0 4 chr6 56518686 56518923 -125896319 - MER46A DNA MER2_type 0 236 1 2815 200 50 22 chr6 56518923 56519329 -125895913 + L1MB8 LINE L1 5746 6176 -2 311 267 30 30 chr6 56519407 56519542 -125895700 - MIR SINE MIR -56 206 72 2105 134 111 10 chr6 56520410 56520799 -125894443 + MSTC LTR MaLR 1 428 0 2205 216 16 45 chr6 56521027 56521602 -125893640 + L1MB7 LINE L1 5563 6120 -64 302 204 171 0 chr6 56521630 56521718 -125893524 + L1M4 LINE L1 3840 3942 -2204 703 264 19 98 chr6 56521769 56522076 -125893166 - MLT1I LTR MaLR 0 409 143 1887 40 0 4 chr6 56522076 56522304 -125892938 - AluY SINE Alu 0 311 85 703 264 19 98 chr6 56522304 56522371 -125892871 - MLT1I LTR MaLR -266 143 72 333 100 0 0 chr6 56523067 56523117 -125892125 + (TA)n Simple_repeat Simple_repeat 2 51 0 581 299 10 25 chr6 56524635 56524827 -125890415 + MIR3 SINE MIR 6 196 -12 198 0 0 0 chr6 56524843 56524865 -125890377 + (TATG)n Simple_repeat Simple_repeat 3 24 0 2048 139 0 0 chr6 56524867 56525161 -125890081 - AluSx SINE Alu -12 300 7 963 126 0 20 chr6 56525275 56525426 -125889816 - AluSx SINE Alu -153 159 12 417 249 56 56 chr6 56525589 56525822 -125889420 + L1MC5 LINE L1 7679 7911 -50 768 304 53 12 chr6 56526107 56526449 -125888793 + L1ME LINE L1 4878 5233 -913 2939 166 35 6 chr6 56526557 56527092 -125888150 + L1MC3 LINE L1 7126 7676 -109 180 0 0 0 chr6 56527092 56527112 -125888130 + (GA)n Simple_repeat Simple_repeat 2 21 0 576 245 82 70 chr6 56527173 56527453 -125887789 + MLT1H1 LTR MaLR 207 493 -62 2043 115 0 7 chr6 56527453 56527781 -125887461 - AluSg1 SINE Alu 0 309 1 576 245 82 70 chr6 56527781 56527843 -125887399 + MLT1H1 LTR MaLR 493 553 -2 787 283 5 14 chr6 56528246 56528465 -125886777 + MIR SINE MIR 46 262 0 230 369 54 28 chr6 56528627 56529015 -125886227 + L1ME LINE L1 5403 5800 -321 2985 177 49 34 chr6 56529648 56530447 -125884795 - MER21A LTR ERV1 -9 922 1 1531 178 92 12 chr6 56531340 56531678 -125883564 + MLT1A1 LTR MaLR 1 365 0 184 360 71 66 chr6 56531822 56532033 -125883209 - L2 LINE L2 -230 3042 2831 578 236 8 8 chr6 56532103 56532226 -125883016 + FLAM_A SINE Alu 1 123 -10 1670 168 0 44 chr6 56532243 56532564 -125882678 + AluJb SINE Alu 3 309 -3 3679 77 20 6 chr6 56532578 56533084 -125882158 - L1PA8 LINE L1 -7 6165 5653 318 36 48 60 chr6 56533084 56533167 -125882075 + (TTAA)n Simple_repeat Simple_repeat 1 82 0 6099 106 12 32 chr6 56533173 56534121 -125881121 - L1PA8 LINE L1 -1142 5004 4076 2423 114 8 13 chr6 56534491 56534868 -125880374 - THE1C LTR MaLR 0 375 1 23 33 0 0 chr6 56535008 56535038 -125880204 + AT_rich Low_complexity Low_complexity 1 30 0 971 266 22 0 chr6 56535038 56535264 -125879978 - MIR SINE MIR 0 262 32 232 305 11 21 chr6 56536272 56536367 -125878875 + LTR67 LTR ERVL 460 553 -4 26 39 0 20 chr6 56537389 56537419 -125877823 + AT_rich Low_complexity Low_complexity 1 31 -19 1340 245 14 0 chr6 56537419 56537705 -125877537 - AluJo SINE Alu -22 290 1 26 39 0 20 chr6 56537705 56537725 -125877517 + AT_rich Low_complexity Low_complexity 31 50 0 1978 226 18 18 chr6 56537768 56538282 -125876960 + L1MC1 LINE L1 4670 5183 -963 5466 156 28 18 chr6 56538285 56539906 -125875336 + L1PA13 LINE L1 4519 6159 -4 * 5992 168 16 6 chr6 56539897 56541059 -125874183 + L1MC1 LINE L1 5156 6328 -5 21 71 0 0 chr6 56541141 56541183 -125874059 + AT_rich Low_complexity Low_complexity 1 42 0 391 272 48 0 chr6 56541252 56541377 -125873865 - L1MC4a LINE L1 -1965 5843 5713 464 122 12 0 chr6 56541447 56541529 -125873713 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 661 259 41 48 chr6 56541879 56542172 -125873070 - HAL1 LINE L1 -722 1785 1495 776 311 105 40 chr6 56542273 56543027 -125872215 - HAL1 LINE L1 -1172 1335 319 188 391 66 13 chr6 56543438 56543589 -125871653 - MER5A DNA MER1_type -30 159 1 25 99 0 0 chr6 56544266 56544347 -125870895 + AT_rich Low_complexity Low_complexity 1 81 0 27 49 0 0 chr6 56544381 56544422 -125870820 + AT_rich Low_complexity Low_complexity 1 41 0 205 179 0 0 chr6 56544630 56544669 -125870573 + T-rich Low_complexity Low_complexity 3 41 0 185 246 70 18 chr6 56546863 56546920 -125868322 + L3 LINE CR1 1380 1439 -138 3374 133 36 19 chr6 56548768 56549383 -125865859 - L1MA9 LINE L1 0 6312 5688 30 27 0 0 chr6 56549506 56549543 -125865699 + AT_rich Low_complexity Low_complexity 1 37 0 1959 123 7 0 chr6 56549811 56550125 -125865117 - AluSg1 SINE Alu 0 316 1 690 234 32 83 chr6 56551459 56551737 -125863505 + MLT1C LTR MaLR 158 421 -46 216 311 14 14 chr6 56554081 56554155 -125861087 + MIR SINE MIR 76 149 -113 22 0 0 0 chr6 56554808 56554830 -125860412 + AT_rich Low_complexity Low_complexity 1 22 0 808 175 0 0 chr6 56554832 56554958 -125860284 - FLAM_C SINE Alu -7 126 1 1589 132 53 18 chr6 56555676 56555957 -125859285 + L1PA16 LINE L1 5876 6166 0 291 224 8 16 chr6 56557110 56557235 -125858007 + (TA)n Simple_repeat Simple_repeat 2 125 0 22 35 0 0 chr6 56557368 56557397 -125857845 + AT_rich Low_complexity Low_complexity 1 29 0 990 238 108 7 chr6 56558261 56558547 -125856695 - MER46C DNA MER2_type 0 338 24 21 0 0 0 chr6 56558664 56558685 -125856557 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr6 56558789 56558845 -125856397 + AT_rich Low_complexity Low_complexity 1 56 0 26 30 0 0 chr6 56558942 56558975 -125856267 + AT_rich Low_complexity Low_complexity 1 33 0 331 259 9 28 chr6 56559260 56559368 -125855874 + GA-rich Low_complexity Low_complexity 4 109 0 271 284 0 0 chr6 56560072 56560139 -125855103 + GA-rich Low_complexity Low_complexity 4 70 0 252 0 0 0 chr6 56560855 56560883 -125854359 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr6 56561120 56561141 -125854101 + AT_rich Low_complexity Low_complexity 1 21 0 222 345 36 12 chr6 56561715 56561799 -125853443 + MIR3 SINE MIR 10 95 -113 287 314 143 9 chr6 56561855 56561960 -125853282 + MIR3 SINE MIR 82 200 -8 411 265 123 12 chr6 56562634 56562804 -125852438 + MIR3 SINE MIR 13 201 -7 660 265 77 5 chr6 56568068 56568264 -125846978 - MIR SINE MIR 0 262 53 331 371 107 0 chr6 56568684 56568843 -125846399 + MIR3 SINE MIR 20 195 -13 305 303 15 53 chr6 56569266 56569398 -125845844 - MIR SINE MIR -50 212 86 1562 185 99 0 chr6 56570050 56570363 -125844879 + MER7A DNA MER2_type 5 346 0 2368 86 0 0 chr6 56571427 56571730 -125843512 + AluSg SINE Alu 1 303 -7 184 237 0 0 chr6 56571905 56571943 -125843299 + MIR SINE MIR 58 95 -167 1785 92 4 0 chr6 56572032 56572259 -125842983 - AluSg/x SINE Alu -7 305 78 362 102 0 0 chr6 56572269 56572318 -125842924 - AluSq/x SINE Alu -177 126 78 1020 248 75 73 chr6 56573938 56574447 -125840795 + MER67D LTR ERV1 1 510 -4 9024 241 47 41 chr6 56574502 56576894 -125838348 + L1ME2 LINE L1 58 2434 -4106 2183 104 3 10 chr6 56576894 56577191 -125838051 + AluY SINE Alu 1 295 -16 9024 241 47 41 chr6 56577191 56578562 -125836680 + L1ME2 LINE L1 2434 3795 -2745 2296 94 0 13 chr6 56578562 56578871 -125836371 + AluY SINE Alu 1 305 -6 9024 241 47 41 chr6 56578871 56580764 -125834478 + L1ME2 LINE L1 3795 5749 -791 1919 195 2 2 chr6 56580760 56581212 -125834030 + L1P LINE L1 4941 5392 -759 * 1492 101 2 36 chr6 56581212 56581538 -125833704 + L1PB1 LINE L1 5171 5488 -663 43029 48 2 1 chr6 56581542 56587681 -125827561 + L1PA4 LINE L1 7 6152 -3 4277 126 9 9 chr6 56587699 56588373 -125826869 + L1PB1 LINE L1 5476 6149 -2 1275 251 74 18 chr6 56588383 56588829 -125826413 + L1ME2 LINE L1 5759 6229 -331 361 108 0 95 chr6 56588829 56588977 -125826265 + (TA)n Simple_repeat Simple_repeat 2 135 0 776 237 39 66 chr6 56588979 56589312 -125825930 + L1ME2 LINE L1 6226 6549 -9 254 198 99 50 chr6 56589334 56589435 -125825807 + L1MCc LINE L1 19 124 -6299 1511 280 79 34 chr6 56589604 56590870 -125824372 + L1MCc LINE L1 799 2123 -4818 1035 266 94 30 chr6 56590947 56591676 -125823566 + L1MCc LINE L1 2752 3485 -3456 13349 45 0 10 chr6 56591695 56594137 -125821105 - L1PA5 LINE L1 -8 6146 3722 6997 68 4 0 chr6 56594139 56595067 -125820175 - L1PA5 LINE L1 -3022 3124 2193 601 245 74 10 chr6 56595067 56595321 -125819921 - MLT1E1 LTR MaLR -333 293 53 2834 243 39 76 chr6 56595387 56595978 -125819264 + L1MCc LINE L1 4137 4749 -2192 270 0 0 0 chr6 56595978 56596008 -125819234 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2834 243 39 76 chr6 56596008 56596379 -125818863 + L1MCc LINE L1 4749 5030 -1911 932 111 11 44 chr6 56596379 56596559 -125818683 + L1MA8 LINE L1 6106 6279 -12 2834 243 39 76 chr6 56596559 56597021 -125818221 + L1MCc LINE L1 5030 5508 -1433 532 159 0 26 chr6 56597020 56597133 -125818109 + L1MA9 LINE L1 6026 6135 -177 * 597 192 14 7 chr6 56597143 56597289 -125817953 + GA-rich Low_complexity Low_complexity 1 147 0 1472 138 12 4 chr6 56597970 56598210 -125817032 - L1MA4 LINE L1 -355 5945 5704 1252 130 9 9 chr6 56598210 56598424 -125816818 + L1MA5 LINE L1 6083 6297 -3 374 355 55 5 chr6 56598427 56598627 -125816615 + MIR SINE MIR 53 262 0 261 273 13 13 chr6 56600742 56600819 -125814423 - HAL1 LINE L1 -1674 833 757 519 312 39 24 chr6 56602635 56602840 -125812402 + MLT1J2 LTR MaLR 241 448 -2 24 32 0 0 chr6 56602958 56602989 -125812253 + AT_rich Low_complexity Low_complexity 1 31 0 1788 148 13 0 chr6 56604419 56604723 -125810519 + L1PB4 LINE L1 5846 6153 -3 2365 74 0 3 chr6 56604743 56605041 -125810201 + AluY SINE Alu 1 297 -14 2882 78 0 0 chr6 56605311 56605685 -125809557 - L1PA6 LINE L1 -11 6143 5770 29864 70 1 5 chr6 56605700 56610466 -125804776 - L1HS LINE L1 0 6155 1411 2142 143 44 0 chr6 56610613 56610956 -125804286 + THE1B LTR MaLR 5 362 -2 9984 116 32 36 chr6 56610958 56612545 -125802697 + THE1B-int LTR MaLR 1 1580 0 2424 150 0 0 chr6 56612545 56612906 -125802336 + THE1B LTR MaLR 1 361 -3 316 363 95 69 chr6 56612938 56613915 -125801327 - L2 LINE L2 -2194 1120 118 269 252 112 42 chr6 56616165 56616308 -125798934 + L3b LINE CR1 1184 1336 -247 2075 180 34 19 chr6 56616562 56616979 -125798263 + MSTB LTR MaLR 4 426 0 636 228 69 90 chr6 56617117 56617350 -125797892 - MLT1J1 LTR MaLR -14 432 205 188 35 35 0 chr6 56618183 56618212 -125797030 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 180 229 164 16 chr6 56618279 56618340 -125796902 + L2 LINE L2 3244 3313 0 283 370 50 0 chr6 56619397 56619497 -125795745 - L2 LINE L2 -14 3258 3154 28 29 0 0 chr6 56619705 56619740 -125795502 + AT_rich Low_complexity Low_complexity 1 35 0 359 254 131 16 chr6 56619806 56619928 -125795314 - MER5A DNA MER1_type -3 186 51 269 195 179 49 chr6 56619828 56619951 -125795291 + MER5A DNA MER1_type 35 173 -16 * 195 42 0 0 chr6 56620083 56620107 -125795135 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2716 180 36 44 chr6 56620194 56620806 -125794436 + L1MB3 LINE L1 5572 6178 -5 21 0 0 0 chr6 56621598 56621619 -125793623 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 56621676 56621703 -125793539 + AT_rich Low_complexity Low_complexity 1 27 0 383 253 84 0 chr6 56622353 56622448 -125792794 + L2 LINE L2 3169 3271 -1 22 35 0 0 chr6 56623686 56623715 -125791527 + AT_rich Low_complexity Low_complexity 1 29 0 261 295 77 0 chr6 56624296 56624374 -125790868 + L2 LINE L2 3210 3293 -20 1837 56 0 0 chr6 56624884 56625118 -125790124 - L1PA4 LINE L1 -3 6152 5919 253 347 24 32 chr6 56625549 56625673 -125789569 + MER5A DNA MER1_type 45 167 -22 241 337 69 29 chr6 56625751 56625926 -125789316 + MIR SINE MIR 39 220 -42 2151 122 0 7 chr6 56627010 56627314 -125787928 + AluSq SINE Alu 1 302 -11 344 143 12 0 chr6 56627651 56627735 -125787507 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 255 31 0 0 chr6 56627745 56627777 -125787465 + (CA)n Simple_repeat Simple_repeat 1 32 0 554 278 92 112 chr6 56627808 56628088 -125787154 + MLT1J2 LTR MaLR 5 274 -176 903 189 116 40 chr6 56628088 56628389 -125786853 - MER33 DNA MER1_type 0 324 1 554 278 92 112 chr6 56628389 56628562 -125786680 + MLT1J2 LTR MaLR 274 449 -1 2019 150 3 0 chr6 56628738 56629045 -125786197 + AluJb SINE Alu 1 308 -4 230 323 153 8 chr6 56629528 56629652 -125785590 - MIR SINE MIR -72 190 49 527 252 36 7 chr6 56630163 56630302 -125784940 + MLT1I LTR MaLR 1 143 -266 1991 133 0 10 chr6 56630491 56630785 -125784457 + AluSx SINE Alu 1 291 -21 626 306 124 30 chr6 56631421 56631482 -125783760 - MLT1I LTR MaLR -2 407 353 964 225 41 14 chr6 56631482 56631700 -125783542 + MER58A DNA MER1_type 1 224 0 626 306 124 30 chr6 56631700 56632001 -125783241 - MLT1I LTR MaLR -56 353 11 355 206 164 27 chr6 56632053 56632199 -125783043 - L1MA10 LINE L1 0 6334 6169 827 231 71 9 chr6 56632199 56632523 -125782719 - L1M4 LINE L1 -1652 4494 4151 * 1002 270 33 13 chr6 56632517 56632913 -125782329 - L1M4 LINE L1 -2701 3445 3042 623 280 52 47 chr6 56632960 56633364 -125781878 + HsTC2 DNA Tc2 1318 1899 0 768 237 35 12 chr6 56633965 56634138 -125781104 + MER97c DNA MER1_type? 1 177 -913 206 354 193 0 chr6 56635404 56635460 -125779782 - MIR SINE MIR -27 235 191 2176 119 3 0 chr6 56635460 56635755 -125779487 - AluSq SINE Alu -17 296 1 206 354 193 0 chr6 56635755 56635859 -125779383 - MIR SINE MIR -71 191 44 257 217 19 38 chr6 56636063 56636169 -125779073 + (TTATA)n Simple_repeat Simple_repeat 5 108 0 894 286 92 63 chr6 56636175 56636700 -125778542 - L2 LINE L2 -32 3281 2735 326 359 23 30 chr6 56636745 56636876 -125778366 - L2 LINE L2 -566 2748 2619 727 248 33 70 chr6 56636878 56636993 -125778249 + L1M4 LINE L1 4878 4996 -1150 1520 157 48 54 chr6 56636993 56637287 -125777955 + AluJo SINE Alu 1 292 -20 727 248 33 70 chr6 56637287 56637541 -125777701 + L1M4 LINE L1 4996 5235 -911 878 62 44 6 chr6 56637541 56637701 -125777541 + (TAGA)n Simple_repeat Simple_repeat 1 166 0 727 248 33 70 chr6 56637701 56637767 -125777475 + L1M4 LINE L1 5235 5302 -844 631 237 79 7 chr6 56637767 56637919 -125777323 - MLT1E LTR MaLR -430 163 1 797 230 77 83 chr6 56637933 56638272 -125776970 - L1MC4a LINE L1 -1881 5927 5591 268 295 57 8 chr6 56638317 56638439 -125776803 - L1MC4a LINE L1 -2363 5445 5318 1994 120 7 39 chr6 56638465 56638774 -125776468 - AluSx SINE Alu -13 299 1 277 130 19 0 chr6 56639081 56639135 -125776107 - L1MC/D LINE L1 -1979 5829 5775 * 327 264 142 10 chr6 56639128 56639385 -125775857 + L1 LINE L1 3654 3952 -2194 361 275 17 25 chr6 56640350 56640470 -125774772 - L2 LINE L2 -50 3263 3145 1400 202 19 0 chr6 56640479 56640746 -125774496 + AluJo SINE Alu 20 291 -21 192 125 0 0 chr6 56641807 56641839 -125773403 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 299 296 134 48 chr6 56642707 56642893 -125772349 + MIR3 SINE MIR 6 207 -1 240 295 74 32 chr6 56643100 56643195 -125772047 + L2 LINE L2 3116 3214 -58 3477 279 155 26 chr6 56643241 56644289 -125770953 + L2 LINE L2 1174 2086 -1227 1421 170 50 28 chr6 56644289 56644572 -125770670 - AluJo SINE Alu -23 289 1 3477 279 155 26 chr6 56644572 56644889 -125770353 + L2 LINE L2 2086 2361 -952 2106 139 3 0 chr6 56644889 56645199 -125770043 + AluSp SINE Alu 1 311 -2 3477 279 155 26 chr6 56645199 56645547 -125769695 + L2 LINE L2 2361 3115 -198 211 222 0 0 chr6 56645557 56645602 -125769640 + L2 LINE L2 3268 3312 -1 27 29 0 0 chr6 56646077 56646111 -125769131 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr6 56646305 56646330 -125768912 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 56646370 56646392 -125768850 + AT_rich Low_complexity Low_complexity 1 22 0 201 196 0 0 chr6 56647779 56647830 -125767412 + (TG)n Simple_repeat Simple_repeat 2 52 0 567 213 12 0 chr6 56648155 56648401 -125766841 + (CCA)n Simple_repeat Simple_repeat 1 249 0 728 278 36 14 chr6 56649296 56649519 -125765723 + MIR SINE MIR 18 245 -17 324 224 56 48 chr6 56649934 56650059 -125765183 - MLT1I LTR MaLR -279 130 5 1525 160 36 7 chr6 56651580 56651855 -125763387 - AluSx SINE Alu -9 303 21 1493 126 0 5 chr6 56652229 56652451 -125762791 + AluSc SINE Alu 83 303 -6 280 159 0 63 chr6 56653027 56653090 -125762152 + MADE1 DNA Mariner 1 59 -21 607 268 82 17 chr6 56653524 56653755 -125761487 - MLT1J LTR MaLR -250 261 16 187 244 198 47 chr6 56653755 56653841 -125761401 + MIR SINE MIR 158 256 -6 1273 150 39 59 chr6 56654197 56654639 -125760603 - L1MC2 LINE L1 -2 6342 5860 2778 151 19 51 chr6 56654683 56655247 -125759995 - L1MA8 LINE L1 -5 6286 5741 303 280 57 81 chr6 56655390 56655601 -125759641 - MER76 LTR ERV -42 646 441 798 212 7 7 chr6 56655662 56655813 -125759429 - MER76 LTR ERV -516 172 22 180 311 0 0 chr6 56656128 56656173 -125759069 + L2 LINE L2 3017 3061 -211 433 248 88 0 chr6 56656309 56656434 -125758808 + MLT1J LTR MaLR 22 157 -354 376 326 81 39 chr6 56657088 56657288 -125757954 - MLT1H1 LTR MaLR -343 252 2 21 0 0 0 chr6 56657428 56657449 -125757793 + AT_rich Low_complexity Low_complexity 1 21 0 474 150 88 53 chr6 56658982 56659095 -125756147 + FRAM SINE Alu 59 175 -1 2044 118 54 0 chr6 56659173 56659469 -125755773 + AluSq SINE Alu 1 312 -1 353 333 83 0 chr6 56659469 56659637 -125755605 - MIR3 SINE MIR -8 200 19 24 0 0 0 chr6 56660647 56660671 -125754571 + AT_rich Low_complexity Low_complexity 1 24 0 225 65 0 0 chr6 56661593 56661624 -125753618 + (TG)n Simple_repeat Simple_repeat 1 31 0 378 204 38 31 chr6 56662267 56662406 -125752836 + MLT1J2 LTR MaLR 294 385 -24 1088 144 115 8 chr6 56662516 56662759 -125752483 - MER33 DNA MER1_type -8 316 48 2199 264 58 0 chr6 56662759 56663330 -125751912 - MER90 LTR ERV1 0 614 11 1262 189 74 32 chr6 56663349 56663661 -125751581 - MLT1B LTR MaLR 0 390 66 255 226 16 0 chr6 56663698 56663760 -125751482 - MER3 DNA MER1_type -112 97 35 842 123 0 0 chr6 56664949 56665063 -125750179 + AluSq/x SINE Alu 1 114 -199 258 215 333 0 chr6 56665579 56665672 -125749570 + L2 LINE L2 3174 3297 -16 201 250 0 0 chr6 56665638 56665678 -125749564 + MIR SINE MIR 219 258 -4 * 1373 81 0 0 chr6 56665701 56665873 -125749369 + AluY SINE Alu 128 299 -12 198 0 0 0 chr6 56667259 56667281 -125747961 + (A)n Simple_repeat Simple_repeat 1 22 0 294 145 24 36 chr6 56667628 56667711 -125747531 + GA-rich Low_complexity Low_complexity 1 82 0 413 219 192 7 chr6 56668103 56668249 -125746993 - MIR SINE MIR 0 262 90 427 257 31 77 chr6 56668970 56669234 -125746008 + MIR SINE MIR 50 256 -6 1382 45 6 0 chr6 56669902 56670080 -125745162 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1971 74 74 18 chr6 56670193 56670476 -125744766 + AluSg SINE Alu 1 299 -11 248 226 19 19 chr6 56671645 56671751 -125743491 + GA-rich Low_complexity Low_complexity 3 108 0 293 48 32 32 chr6 56672721 56672783 -125742459 + (CA)n Simple_repeat Simple_repeat 2 63 0 180 0 0 0 chr6 56675782 56675802 -125739440 + (T)n Simple_repeat Simple_repeat 1 20 0 294 95 0 0 chr6 56675818 56675860 -125739382 + (CGG)n Simple_repeat Simple_repeat 2 43 0 324 83 0 0 chr6 56676481 56676529 -125738713 + (TG)n Simple_repeat Simple_repeat 1 48 0 358 20 39 0 chr6 56677376 56677427 -125737815 + (TC)n Simple_repeat Simple_repeat 2 54 0 279 0 0 0 chr6 56677427 56677458 -125737784 + (CA)n Simple_repeat Simple_repeat 1 31 0 384 167 0 0 chr6 56678113 56678185 -125737057 + GA-rich Low_complexity Low_complexity 3 74 0 218 240 13 13 chr6 56679310 56679385 -125735857 + (TA)n Simple_repeat Simple_repeat 1 75 0 578 71 0 12 chr6 56681096 56681181 -125734061 + (GAAA)n Simple_repeat Simple_repeat 4 87 0 480 35 0 0 chr6 56682164 56682222 -125733020 + (CA)n Simple_repeat Simple_repeat 2 59 0 379 301 187 0 chr6 56689154 56689277 -125725965 - MER5A DNA MER1_type 0 189 44 520 301 46 23 chr6 56692353 56692526 -125722716 + MER5B DNA MER1_type 2 178 0 231 36 0 0 chr6 56693124 56693152 -125722090 + (CA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr6 56694528 56694551 -125720691 + AT_rich Low_complexity Low_complexity 1 23 0 330 26 0 0 chr6 56695658 56695697 -125719545 + (TG)n Simple_repeat Simple_repeat 2 40 0 254 279 15 0 chr6 56695982 56696050 -125719192 + MIR SINE MIR 86 154 -108 607 286 112 49 chr6 56696062 56696411 -125718831 - MLT1J2 LTR MaLR -10 440 70 479 303 112 11 chr6 56696632 56696820 -125718422 + MIR SINE MIR 28 234 -28 233 293 104 47 chr6 56696822 56696928 -125718314 - MIR SINE MIR -64 144 33 1406 181 50 20 chr6 56698644 56698943 -125716299 - AluJb SINE Alu 0 312 5 799 304 45 21 chr6 56699293 56699714 -125715528 - L1MC4a LINE L1 -1848 5960 5530 509 311 47 94 chr6 56699867 56700337 -125714905 - L1MC4a LINE L1 -816 5330 4883 314 257 164 33 chr6 56700653 56700752 -125714490 - MER5B DNA MER1_type 0 178 93 3602 43 0 2 chr6 56700752 56701192 -125714050 - L1PA5 LINE L1 -3 6151 5713 314 257 164 33 chr6 56701192 56701244 -125713998 - MER5B DNA MER1_type -85 93 7 326 333 0 0 chr6 56701454 56701535 -125713707 - L2 LINE L2 -5 3267 3187 2055 115 0 21 chr6 56702101 56702414 -125712828 - AluSg1 SINE Alu 0 307 1 27 81 0 0 chr6 56702747 56702809 -125712433 + AT_rich Low_complexity Low_complexity 1 62 0 1956 123 10 0 chr6 56702959 56703259 -125711983 - L1PA13 LINE L1 0 6163 5861 225 65 0 0 chr6 56703259 56703290 -125711952 + L1P4 LINE L1 5594 5624 -544 661 109 8 17 chr6 56704204 56704323 -125710919 + (TAGA)n Simple_repeat Simple_repeat 3 120 0 369 0 0 0 chr6 56704632 56704673 -125710569 + (CA)n Simple_repeat Simple_repeat 2 42 0 1486 176 4 16 chr6 56705033 56705332 -125709910 - AluJb SINE Alu 0 326 31 2300 121 46 3 chr6 56705725 56706098 -125709144 - L1PA15 LINE L1 -3 6162 5774 1688 184 0 3 chr6 56707905 56708215 -125707027 - AluJb SINE Alu 0 309 1 21 57 0 0 chr6 56710062 56710097 -125705145 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr6 56710675 56710699 -125704543 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 56710854 56710875 -125704367 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 56711075 56711106 -125704136 + AT_rich Low_complexity Low_complexity 1 31 0 1670 192 24 35 chr6 56713106 56713475 -125701767 - MLT1A1 LTR MaLR 0 365 1 538 15 0 0 chr6 56713838 56713903 -125701339 + L1PA3 LINE L1 6088 6152 -3 289 295 52 62 chr6 56714471 56714664 -125700578 + MIR SINE MIR 17 207 -55 4393 186 69 5 chr6 56715644 56716010 -125699232 - L1MB2 LINE L1 0 6171 5830 282 95 0 0 chr6 56716010 56716052 -125699190 + (TG)n Simple_repeat Simple_repeat 1 42 0 4393 186 69 5 chr6 56716052 56716851 -125698391 - L1MB2 LINE L1 -341 5830 4936 303 301 33 104 chr6 56717065 56717248 -125697994 - MER5B DNA MER1_type -6 172 3 509 206 0 0 chr6 56717382 56717479 -125697763 + AluJo SINE Alu 40 136 -176 1287 203 86 10 chr6 56717551 56717841 -125697401 - AluJb SINE Alu 0 312 1 378 191 62 0 chr6 56718921 56719083 -125696159 + (TA)n Simple_repeat Simple_repeat 1 172 0 393 120 64 9 chr6 56719102 56719525 -125695717 + (TA)n Simple_repeat Simple_repeat 1 445 0 381 282 229 24 chr6 56719917 56720289 -125694953 - L3 LINE CR1 -7 1570 1123 712 111 0 34 chr6 56720528 56720645 -125694597 - MER31A LTR ERV1 -372 113 1 299 371 46 13 chr6 56720950 56721101 -125694141 + MIR3 SINE MIR 39 194 -14 231 245 31 71 chr6 56721677 56721775 -125693467 - MER103 DNA DNA -1 165 72 548 246 8 30 chr6 56722027 56722161 -125693081 + MER5B DNA MER1_type 46 176 -2 188 159 0 23 chr6 56724041 56724085 -125691157 + (CA)n Simple_repeat Simple_repeat 1 43 0 225 108 0 0 chr6 56724524 56724561 -125690681 + (GA)n Simple_repeat Simple_repeat 2 38 0 1065 325 62 35 chr6 56724677 56725305 -125689937 - L3 LINE CR1 -671 906 262 1195 240 84 8 chr6 56725308 56725675 -125689567 + L1ME1 LINE L1 5767 6161 -5 21 0 0 0 chr6 56725716 56725737 -125689505 + AT_rich Low_complexity Low_complexity 1 21 0 324 177 0 0 chr6 56726184 56726246 -125688996 + L1PB4 LINE L1 6093 6154 -2 2617 132 35 37 chr6 56726452 56726960 -125688282 - L1MA9 LINE L1 -5 6307 5801 5882 171 29 30 chr6 56726969 56728328 -125686914 - L1MA9 LINE L1 -583 5729 4367 2874 19 0 0 chr6 56728328 56728645 -125686597 - AluYb8 SINE Alu -1 317 1 5882 171 29 30 chr6 56728645 56729026 -125686216 - L1MA9 LINE L1 -1945 4367 3987 751 268 0 0 chr6 56730011 56730175 -125685067 - FRAM SINE Alu -2 164 1 2075 103 41 17 chr6 56730581 56730871 -125684371 - AluSg SINE Alu -13 297 1 606 256 43 0 chr6 56731452 56731616 -125683626 + MIR SINE MIR 90 260 -2 26 0 0 0 chr6 56732374 56732400 -125682842 + AT_rich Low_complexity Low_complexity 1 26 0 259 208 0 0 chr6 56732867 56732920 -125682322 - MLT1J LTR MaLR -53 458 406 464 267 76 12 chr6 56733001 56733173 -125682069 - MLT1J LTR MaLR -315 196 14 6011 34 7 0 chr6 56733355 56734072 -125681170 + L1PA5 LINE L1 5424 6145 -9 21 0 0 0 chr6 56734072 56734093 -125681149 + AT_rich Low_complexity Low_complexity 1 21 0 213 230 0 0 chr6 56734662 56734736 -125680506 + A-rich Low_complexity Low_complexity 1 74 0 26 0 0 0 chr6 56737128 56737154 -125678088 + AT_rich Low_complexity Low_complexity 1 26 0 2249 100 13 3 chr6 56737302 56737602 -125677640 + AluSq SINE Alu 1 303 -10 213 175 0 0 chr6 56738292 56738332 -125676910 + (TA)n Simple_repeat Simple_repeat 2 41 0 879 273 24 16 chr6 56738405 56738654 -125676588 + MIR SINE MIR 11 261 -1 202 281 47 16 chr6 56738713 56738777 -125676465 - L2 LINE L2 -21 3292 3227 2212 129 3 0 chr6 56739350 56739660 -125675582 - AluSx SINE Alu -1 311 1 257 211 171 49 chr6 56740468 56740591 -125674651 - LTR50 LTR ERVL -606 189 52 1200 205 5 9 chr6 56741297 56741521 -125673721 - MER58A DNA MER1_type -1 223 1 282 307 55 8 chr6 56741536 56741663 -125673579 + MLT1J1 LTR MaLR 84 216 -230 617 217 32 90 chr6 56741686 56741875 -125673367 - MER20 DNA MER1_type 0 219 42 235 273 0 0 chr6 56741904 56741970 -125673272 + MLT1J2 LTR MaLR 266 331 -119 517 300 71 94 chr6 56742097 56742379 -125672863 + L2 LINE L2 2262 2549 -723 2019 145 0 3 chr6 56742379 56742682 -125672560 + AluSx SINE Alu 1 302 -10 517 300 71 94 chr6 56742682 56743190 -125672052 + L2 LINE L2 2549 3031 -241 1603 250 72 38 chr6 56743203 56743760 -125671482 - MLT1E2 LTR MaLR 0 626 51 2722 45 0 0 chr6 56743876 56744210 -125671032 - L1PA4 LINE L1 -1 6154 5821 2884 44 0 0 chr6 56744211 56744573 -125670669 + L1PA4 LINE L1 5451 5812 -343 2283 112 0 3 chr6 56744645 56744948 -125670294 - AluSx SINE Alu -10 302 1 562 266 22 0 chr6 56745020 56745159 -125670083 + MIR SINE MIR 119 260 -2 282 258 0 0 chr6 56746315 56746377 -125668865 - L2 LINE L2 0 3313 3252 1078 177 0 0 chr6 56746761 56746936 -125668306 + FAM SINE Alu 1 175 0 1030 189 11 0 chr6 56747162 56747353 -125667889 - MER20 DNA MER1_type -4 215 23 417 272 43 31 chr6 56747901 56748063 -125667179 + MLT1H LTR MaLR 382 545 -4 1071 176 0 17 chr6 56748314 56748490 -125666752 + AluJo SINE Alu 1 173 -139 207 125 0 0 chr6 56748490 56748530 -125666712 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 528 16 0 0 chr6 56748548 56748609 -125666633 + (TA)n Simple_repeat Simple_repeat 2 62 0 232 280 194 0 chr6 56748664 56748757 -125666485 - L2 LINE L2 -1 3312 3202 519 277 45 39 chr6 56748890 56749045 -125666197 + MIR SINE MIR 83 238 -24 412 306 189 5 chr6 56749072 56749268 -125665974 + MIR SINE MIR 12 243 -19 246 314 78 76 chr6 56749337 56749696 -125665546 - L2 LINE L2 -192 3080 2708 21 82 0 0 chr6 56750353 56750402 -125664840 + AT_rich Low_complexity Low_complexity 1 49 0 32 0 0 0 chr6 56750414 56750446 -125664796 + AT_rich Low_complexity Low_complexity 1 32 0 2143 216 54 16 chr6 56750967 56751467 -125663775 + LTR40a LTR ERVL 1 519 0 209 287 103 0 chr6 56751529 56751616 -125663626 + L2 LINE L2 3217 3312 -1 421 259 29 22 chr6 56751955 56752094 -125663148 + L2 LINE L2 2920 3059 -213 181 235 0 39 chr6 56752273 56752324 -125662918 + L2 LINE L2 3264 3312 -1 199 375 0 0 chr6 56754319 56754383 -125660859 + MIR SINE MIR 84 147 -115 187 279 0 127 chr6 56754716 56754795 -125660447 + MIR SINE MIR 16 84 -178 632 280 16 44 chr6 56754827 56755009 -125660233 - MIR SINE MIR -84 178 2 253 350 98 21 chr6 56755009 56755160 -125660082 + MIR SINE MIR 94 262 0 275 340 10 0 chr6 56755258 56755361 -125659881 - MIR3 SINE MIR -15 193 90 302 283 85 85 chr6 56755758 56755935 -125659307 + MER5A DNA MER1_type 11 187 -2 492 158 0 0 chr6 56756071 56756166 -125659076 + CT-rich Low_complexity Low_complexity 2 96 0 2227 113 3 6 chr6 56757515 56757826 -125657416 + AluSg SINE Alu 1 310 0 334 90 175 1 chr6 56757907 56757984 -125657258 - L1MA4A LINE L1 -169 6126 6035 450 229 0 69 chr6 56758078 56758209 -125657033 - L2 LINE L2 0 3313 3192 180 315 118 47 chr6 56758215 56758342 -125656900 + MIR3 SINE MIR 9 144 -64 1506 182 0 20 chr6 56758360 56758613 -125656629 + AluJo SINE Alu 1 248 -64 1159 156 66 56 chr6 56758657 56758959 -125656283 + L1MA3 LINE L1 6001 6305 0 622 287 75 30 chr6 56759914 56759936 -125655306 - MLT1J LTR MaLR -3 508 488 2769 7 0 0 chr6 56759936 56760237 -125655005 + AluY SINE Alu 1 301 -10 622 287 75 30 chr6 56760237 56760482 -125654760 - MLT1J LTR MaLR -23 488 229 236 189 0 0 chr6 56760850 56760903 -125654339 - L1MC4 LINE L1 -64 7978 7926 909 235 85 0 chr6 56760907 56761188 -125654054 - L1MC4 LINE L1 -154 7888 7584 632 225 46 0 chr6 56761258 56761431 -125653811 + L1MC4 LINE L1 7313 7493 -549 5771 88 29 10 chr6 56762608 56763263 -125651979 - L1PA10 LINE L1 -9 6159 5488 2466 80 0 3 chr6 56763263 56763574 -125651668 - AluSq SINE Alu -3 310 1 5771 88 29 10 chr6 56763574 56763802 -125651440 - L1PA10 LINE L1 -680 5488 5266 2758 9 0 28 chr6 56763921 56764238 -125651004 - AluYb8 SINE Alu -10 308 1 223 231 51 51 chr6 56765073 56765151 -125650091 + MIR SINE MIR 185 262 0 489 267 57 74 chr6 56765634 56765810 -125649432 + MIR3 SINE MIR 21 193 -15 795 204 50 59 chr6 56766124 56766344 -125648898 - MER20 DNA MER1_type 0 219 2 243 297 0 51 chr6 56766377 56766495 -125648747 + CT-rich Low_complexity Low_complexity 3 114 0 377 330 48 40 chr6 56766595 56766822 -125648420 + MIR SINE MIR 32 260 -2 1961 138 51 36 chr6 56768004 56768360 -125646882 + THE1B LTR MaLR 1 361 -3 321 26 0 0 chr6 56768361 56768399 -125646843 + (CA)n Simple_repeat Simple_repeat 1 38 0 1796 88 4 0 chr6 56768458 56768684 -125646558 + AluSp SINE Alu 1 227 -86 26 0 0 0 chr6 56768756 56768782 -125646460 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 56768798 56768820 -125646422 + AT_rich Low_complexity Low_complexity 1 22 0 450 311 95 30 chr6 56769451 56769715 -125645527 - L3 LINE CR1 -2 1575 1295 264 284 15 15 chr6 56769744 56769811 -125645431 - L2 LINE L2 -38 3234 3168 755 344 51 64 chr6 56769811 56769959 -125645283 - L3 LINE CR1 -284 1293 1145 1501 168 0 87 chr6 56769959 56770269 -125644973 - AluJo SINE Alu -7 305 23 755 344 51 64 chr6 56770269 56770900 -125644342 - L3 LINE CR1 -432 1145 524 218 370 31 8 chr6 56770920 56771047 -125644195 - MIR SINE MIR -9 253 124 10459 75 17 8 chr6 56771127 56772499 -125642743 - SVA Other Other -2 1384 1 250 330 34 0 chr6 56772503 56772591 -125642651 - MIR SINE MIR -157 105 15 489 321 79 63 chr6 56772647 56772903 -125642339 - L3 LINE CR1 -1110 467 200 1608 165 0 65 chr6 56772903 56773225 -125642017 - AluSx SINE Alu -11 301 1 489 321 79 63 chr6 56773225 56773413 -125641829 - L3 LINE CR1 -1377 200 16 1507 208 33 17 chr6 56773453 56773608 -125641634 + MLT1A1 LTR MaLR 3 154 -303 1725 130 12 84 chr6 56773608 56773931 -125641311 + AluSx SINE Alu 1 300 -12 1507 208 33 17 chr6 56773931 56774118 -125641124 + MLT1A1 LTR MaLR 154 442 -15 1697 171 10 29 chr6 56774503 56774813 -125640429 + AluJo SINE Alu 1 304 -8 2047 130 3 0 chr6 56774899 56775183 -125640059 - AluSq SINE Alu -14 299 15 330 323 10 10 chr6 56775184 56775280 -125639962 - MIR3 SINE MIR -49 159 64 204 250 0 0 chr6 56778812 56778876 -125636366 + GA-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr6 56778999 56779020 -125636222 + AT_rich Low_complexity Low_complexity 1 21 0 192 246 15 77 chr6 56780783 56780848 -125634394 - L2 LINE L2 -244 3069 3009 201 100 100 0 chr6 56781484 56781574 -125633668 + (CGAGG)n Simple_repeat Simple_repeat 4 102 0 288 192 14 27 chr6 56782118 56782191 -125633051 + GA-rich Low_complexity Low_complexity 5 76 0 282 210 48 0 chr6 56782530 56782654 -125632588 + GA-rich Low_complexity Low_complexity 1 130 0 21 0 0 0 chr6 56783666 56783687 -125631555 + AT_rich Low_complexity Low_complexity 1 21 0 236 253 12 0 chr6 56783873 56783956 -125631286 + CT-rich Low_complexity Low_complexity 2 85 0 254 212 0 12 chr6 56784990 56785075 -125630167 + CT-rich Low_complexity Low_complexity 1 84 0 225 0 0 0 chr6 56785549 56785574 -125629668 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 189 0 0 0 chr6 56788244 56788265 -125626977 + (CG)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr6 56791626 56791646 -125623596 + (TC)n Simple_repeat Simple_repeat 1 20 0 270 0 0 0 chr6 56795201 56795231 -125620011 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 286 237 32 32 chr6 56797323 56797416 -125617826 - MIR SINE MIR -95 167 75 258 56 0 0 chr6 56797972 56798008 -125617234 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 260 246 174 7 chr6 56798356 56798494 -125616748 + MER112 DNA MER1_type 93 253 -7 289 299 42 60 chr6 56803283 56803450 -125611792 + MER5A DNA MER1_type 24 187 -2 24 0 0 0 chr6 56805492 56805516 -125609726 + AT_rich Low_complexity Low_complexity 1 24 0 214 260 0 0 chr6 56810083 56810133 -125605109 + MIR SINE MIR 92 141 -67 204 0 83 0 chr6 56810488 56810524 -125604718 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 222 149 21 0 chr6 56815521 56815568 -125599674 + T-rich Low_complexity Low_complexity 2 49 0 678 177 0 57 chr6 56816948 56817089 -125598153 + FLAM_A SINE Alu 1 133 0 2197 128 31 25 chr6 56817293 56817653 -125597589 + THE1B LTR MaLR 3 364 0 1005 114 12 24 chr6 56817993 56818160 -125597082 - L1PA16 LINE L1 0 6166 6002 243 0 0 0 chr6 56818162 56818189 -125597053 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1419 187 34 8 chr6 56818196 56818464 -125596778 - AluSx SINE Alu -37 275 1 2547 127 12 12 chr6 56818465 56818881 -125596361 - L1PA16 LINE L1 -158 6008 5593 2399 123 9 4 chr6 56819366 56819786 -125595456 - L1PA16 LINE L1 -566 5600 5175 341 203 88 108 chr6 56820570 56820619 -125594623 - MER5B DNA MER1_type -16 162 114 2404 98 0 0 chr6 56820619 56820925 -125594317 + AluY SINE Alu 1 306 -5 341 203 88 108 chr6 56820925 56821023 -125594219 - MER5B DNA MER1_type -64 114 18 421 135 22 0 chr6 56821215 56821304 -125593938 + CT-rich Low_complexity Low_complexity 1 91 0 2077 127 0 3 chr6 56821304 56821595 -125593647 - AluSx SINE Alu -22 290 1 217 328 0 0 chr6 56821666 56821724 -125593518 - L2 LINE L2 -61 3211 3154 199 196 152 0 chr6 56821813 56821859 -125593383 - L2 LINE L2 -12 3301 3249 275 227 107 29 chr6 56822321 56822454 -125592788 - MIR SINE MIR -60 148 62 261 0 0 0 chr6 56824369 56824398 -125590844 + (CA)n Simple_repeat Simple_repeat 1 29 0 237 260 26 13 chr6 56825284 56825361 -125589881 + GA-rich Low_complexity Low_complexity 3 80 0 247 293 0 27 chr6 56826276 56826351 -125588891 + CT-rich Low_complexity Low_complexity 5 77 0 340 240 128 40 chr6 56826614 56826739 -125588503 + MIR SINE MIR 71 206 -56 1427 246 26 42 chr6 56826956 56827383 -125587859 + MLT1C LTR MaLR 6 425 -42 378 267 43 0 chr6 56827868 56827984 -125587258 - MER103 DNA DNA -43 123 3 23 0 0 0 chr6 56828051 56828074 -125587168 + AT_rich Low_complexity Low_complexity 1 23 0 2399 224 89 36 chr6 56828086 56828910 -125586332 + L1MC4 LINE L1 6932 7798 -244 1684 185 3 3 chr6 56828957 56829243 -125585999 - AluJo SINE Alu -25 287 2 329 157 29 0 chr6 56829253 56829323 -125585919 - L1MA7 LINE L1 -2 6289 6218 255 125 0 0 chr6 56830503 56830543 -125584699 + (T)n Simple_repeat Simple_repeat 1 40 0 636 186 0 0 chr6 56833682 56833800 -125581442 - FLAM_C SINE Alu -5 138 21 464 231 19 83 chr6 56833993 56834149 -125581093 + MIR3 SINE MIR 40 185 -23 570 279 75 38 chr6 56835920 56836160 -125579082 + MIR SINE MIR 8 256 -6 26 74 0 0 chr6 56836571 56836625 -125578617 + AT_rich Low_complexity Low_complexity 1 54 0 244 356 31 18 chr6 56837154 56837317 -125577925 - LTR16C LTR ERVL -2 489 325 332 314 23 59 chr6 56837713 56837933 -125577309 - LTR16C LTR ERVL 0 491 280 375 320 0 16 chr6 56837959 56838081 -125577161 - MIR SINE MIR -142 120 1 312 382 69 44 chr6 56838966 56839285 -125575957 + L2 LINE L2 2941 3267 -5 387 0 0 0 chr6 56840546 56840589 -125574653 + (TG)n Simple_repeat Simple_repeat 1 43 0 424 211 49 65 chr6 56840756 56840879 -125574363 - MLT2C1 LTR ERVL -246 151 31 666 228 101 0 chr6 56841429 56841587 -125573655 + MIR SINE MIR 68 241 -21 295 206 43 0 chr6 56841976 56842068 -125573174 + C-rich Low_complexity Low_complexity 2 97 0 249 350 38 80 chr6 56842189 56842426 -125572816 - L2 LINE L2 -182 3090 2864 2029 113 11 7 chr6 56843269 56843552 -125571690 - AluSx SINE Alu -14 298 15 287 192 0 0 chr6 56843689 56843741 -125571501 - L1M3 LINE L1 -524 5644 5593 21 0 0 0 chr6 56843935 56843956 -125571286 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chr6 56844370 56844415 -125570827 + (TG)n Simple_repeat Simple_repeat 1 45 0 237 245 0 0 chr6 56845792 56845845 -125569397 + L2 LINE L2 3261 3313 0 404 297 97 0 chr6 56845947 56846102 -125569140 - MIR SINE MIR -13 249 80 292 250 73 0 chr6 56846153 56846221 -125569021 - tRNA-Glu-GAG tRNA tRNA 0 75 3 924 255 39 4 chr6 56846639 56846870 -125568372 + MIR SINE MIR 19 257 -5 1842 77 0 0 chr6 56848104 56848338 -125566904 + AluY SINE Alu 61 294 -17 311 258 227 8 chr6 56848635 56848763 -125566479 - MIR3 SINE MIR -14 194 39 33 0 0 0 chr6 56849343 56849376 -125565866 + AT_rich Low_complexity Low_complexity 1 33 0 2128 24 0 4 chr6 56849625 56849880 -125565362 - L1PA2 LINE L1 -1 6154 5901 1624 166 32 11 chr6 56849887 56850171 -125565071 + MLT1A1 LTR MaLR 30 319 -46 28 0 0 0 chr6 56853706 56853734 -125561508 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 56853940 56853968 -125561274 + AT_rich Low_complexity Low_complexity 1 28 0 994 244 77 47 chr6 56854819 56855376 -125559866 - L1MEc LINE L1 -2679 3536 2963 243 0 0 0 chr6 56855429 56855456 -125559786 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5269 8 0 0 chr6 56855456 56856049 -125559193 - L1PA2 LINE L1 -11 6144 5552 3764 15 0 0 chr6 56856049 56856652 -125558590 + L1PA2 LINE L1 4947 5549 -606 1523 274 59 69 chr6 56856647 56857462 -125557780 - L1MEc LINE L1 -4932 1464 661 * 2136 131 0 3 chr6 56857462 56857775 -125557467 - AluSq SINE Alu -1 312 1 1523 274 59 69 chr6 56857775 56858045 -125557197 - L1MEc LINE L1 -5735 661 390 427 161 0 136 chr6 56858049 56858167 -125557075 + MLT1A1 LTR MaLR 404 505 0 1308 245 20 17 chr6 56858167 56858522 -125556720 - L1M4 LINE L1 -1110 5036 4681 582 183 0 0 chr6 56858550 56858665 -125556577 + CT-rich Low_complexity Low_complexity 1 115 0 1785 140 33 27 chr6 56858665 56858965 -125556277 - AluSx SINE Alu -10 302 1 23 33 0 0 chr6 56858966 56858996 -125556246 + AT_rich Low_complexity Low_complexity 1 30 0 2493 228 19 21 chr6 56859918 56860590 -125554652 - L1M4 LINE L1 -1460 4686 4016 1009 194 84 24 chr6 56860623 56861656 -125553586 - L1MC2 LINE L1 -8 6336 5188 299 266 43 11 chr6 56861657 56861751 -125553491 + MIR SINE MIR 100 196 -66 231 114 0 45 chr6 56861765 56861809 -125553433 - LTR33A LTR ERVL -31 492 451 1862 145 13 10 chr6 56863028 56863338 -125551904 - AluSx SINE Alu -1 311 1 1042 126 0 16 chr6 56864011 56864194 -125551048 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 705 230 53 64 chr6 56864979 56865244 -125549998 + MLT1J2 LTR MaLR 1 262 -188 214 214 24 0 chr6 56865263 56865305 -125549937 - MER5B DNA MER1_type -132 46 4 655 276 31 0 chr6 56865314 56865506 -125549736 - MER105 DNA DNA 0 204 7 519 308 54 0 chr6 56865508 56865693 -125549549 + MLT1J2 LTR MaLR 256 450 0 193 299 103 0 chr6 56867132 56867219 -125548023 + MIR SINE MIR 81 176 -86 2234 89 7 0 chr6 56867336 56867628 -125547614 - AluSx SINE Alu -5 307 14 616 257 22 123 chr6 56867810 56868086 -125547156 + MIR SINE MIR 13 260 -2 420 289 10 69 chr6 56869581 56869785 -125545457 - MIR SINE MIR 0 262 71 25 0 0 0 chr6 56870195 56870220 -125545022 + AT_rich Low_complexity Low_complexity 1 25 0 232 284 30 15 chr6 56870410 56870477 -125544765 + L2 LINE L2 3242 3309 -4 5715 234 60 32 chr6 56870549 56871796 -125543446 - L1ME1 LINE L1 -5 6230 5020 369 0 0 0 chr6 56871796 56871837 -125543405 + (TG)n Simple_repeat Simple_repeat 2 42 0 5715 234 60 32 chr6 56871837 56873138 -125542104 - L1ME1 LINE L1 -1215 5020 3548 1461 209 77 139 chr6 56873150 56874219 -125541023 - L1ME1 LINE L1 -2868 3347 2346 2160 282 48 25 chr6 56875142 56875643 -125539599 - L1ME1 LINE L1 -3994 2402 1914 1869 146 7 3 chr6 56875643 56875937 -125539305 - AluSx SINE Alu -9 303 9 2160 282 48 25 chr6 56875937 56876527 -125538715 - L1ME1 LINE L1 -4482 1914 1285 3408 190 55 28 chr6 56876681 56877165 -125538077 - L1MA9 LINE L1 -38 6274 5760 327 25 0 0 chr6 56877165 56877205 -125538037 + (CA)n Simple_repeat Simple_repeat 2 41 0 3408 190 55 28 chr6 56877205 56877498 -125537744 - L1MA9 LINE L1 -552 5760 5476 42220 56 4 1 chr6 56877526 56883661 -125531581 - L1PA3 LINE L1 -1 6154 1 1715 168 57 52 chr6 56883671 56883912 -125531330 - L1MA9 LINE L1 -1189 4957 4712 1433 190 93 0 chr6 56883912 56884181 -125531061 - AluSx SINE Alu -7 295 2 1715 168 57 52 chr6 56884181 56884362 -125530880 - L1MA9 LINE L1 -1434 4712 4533 2875 251 83 42 chr6 56884376 56885469 -125529773 - L1ME1 LINE L1 -5203 1193 56 219 365 35 0 chr6 56885499 56885614 -125529628 + MIR SINE MIR 51 169 -93 21 0 0 0 chr6 56886038 56886059 -125529183 + AT_rich Low_complexity Low_complexity 1 21 0 216 388 25 0 chr6 56886914 56886994 -125528248 - MIR SINE MIR -77 131 50 410 167 8 11 chr6 56886994 56887120 -125528122 + AluJ/FRAM SINE Alu 135 296 -16 386 284 226 0 chr6 56887226 56887381 -125527861 - MIR SINE MIR -71 191 2 373 301 22 15 chr6 56890582 56890718 -125524524 - L2 LINE L2 -18 3295 3159 21 36 0 0 chr6 56890720 56890748 -125524494 + AT_rich Low_complexity Low_complexity 1 28 0 279 200 0 0 chr6 56890763 56890818 -125524424 + MLT1E2 LTR MaLR 572 626 0 312 264 78 16 chr6 56890819 56890948 -125524294 - L1ME LINE L1 -322 5842 5706 262 273 172 10 chr6 56890952 56891212 -125524030 - L2 LINE L2 -137 3176 2817 29 70 0 0 chr6 56892006 56892063 -125523179 + AT_rich Low_complexity Low_complexity 1 57 0 2430 80 0 6 chr6 56892270 56892581 -125522661 - AluSc SINE Alu 0 309 1 2012 162 11 0 chr6 56892724 56893089 -125522153 - L1MA5 LINE L1 -3 6297 5929 23 33 0 0 chr6 56893094 56893124 -125522118 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr6 56893147 56893187 -125522055 + AT_rich Low_complexity Low_complexity 1 40 0 1392 221 10 17 chr6 56893192 56893486 -125521756 - AluJo SINE Alu -18 294 3 198 0 0 0 chr6 56893595 56893617 -125521625 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7849 14 0 0 chr6 56893617 56894592 -125520650 - L1PA3 LINE L1 -10 6145 5171 2241 104 3 3 chr6 56894702 56895010 -125520232 + AluSp SINE Alu 1 308 -5 21 0 0 0 chr6 56895248 56895269 -125519973 + AT_rich Low_complexity Low_complexity 1 21 0 1075 128 6 0 chr6 56895753 56895909 -125519333 + AluSg/x SINE Alu 150 306 -6 203 312 54 108 chr6 56895963 56896056 -125519186 - L2 LINE L2 -36 3236 3149 232 361 9 37 chr6 56896275 56896383 -125518859 - L2 LINE L2 -185 3087 2983 22 0 0 0 chr6 56896631 56896653 -125518589 + AT_rich Low_complexity Low_complexity 1 22 0 367 318 34 14 chr6 56896769 56896913 -125518329 - MIR SINE MIR -58 150 8 1146 332 48 30 chr6 56896964 56897467 -125517775 - LTR67 LTR ERVL -10 547 36 609 261 12 0 chr6 56898936 56899097 -125516145 + FRAM SINE Alu 1 163 -13 35 41 0 0 chr6 56899460 56899509 -125515733 + AT_rich Low_complexity Low_complexity 1 49 0 877 152 0 0 chr6 56899900 56900032 -125515210 + FLAM_A SINE Alu 1 132 -1 3365 138 38 29 chr6 56902997 56903625 -125511617 + L1MB8 LINE L1 5539 6172 -6 845 249 25 0 chr6 56904505 56904706 -125510536 + MER63A DNA MER1_type 5 210 0 1534 108 36 0 chr6 56904925 56905147 -125510095 + MER30 DNA MER1_type 1 230 0 360 64 0 0 chr6 56905254 56905301 -125509941 + (TG)n Simple_repeat Simple_repeat 1 47 0 217 333 125 10 chr6 56905922 56906018 -125509224 - MIR SINE MIR -63 145 39 1683 217 51 22 chr6 56907147 56907886 -125507356 + L1ME1 LINE L1 4885 5643 -521 381 41 0 0 chr6 56907890 56907939 -125507303 + MADE1 DNA Mariner 2 50 -30 1224 86 0 12 chr6 56907957 56908119 -125507123 - AluSg/x SINE Alu -6 306 147 253 139 0 0 chr6 56908119 56908162 -125507080 + MADE1 DNA Mariner 38 80 0 2127 221 17 25 chr6 56908162 56908688 -125506554 + L1ME1 LINE L1 5640 6161 -5 222 152 0 65 chr6 56908731 56908777 -125506465 + MIR SINE MIR 110 152 -110 1757 70 0 0 chr6 56908779 56908993 -125506249 - AluY SINE Alu -85 226 13 25 40 0 20 chr6 56908993 56909024 -125506218 + AT_rich Low_complexity Low_complexity 1 32 -17 1654 222 127 49 chr6 56909024 56909538 -125505704 - MLT2B3 LTR ERVL 0 554 1 25 40 0 20 chr6 56909538 56909556 -125505686 + AT_rich Low_complexity Low_complexity 32 49 0 30 0 0 0 chr6 56910090 56910120 -125505122 + AT_rich Low_complexity Low_complexity 1 30 0 13688 122 20 13 chr6 56910238 56911094 -125504148 + Tigger1 DNA MER2_type 289 1137 -1281 2164 126 0 3 chr6 56911094 56911404 -125503838 + AluSc SINE Alu 1 309 0 13688 122 20 13 chr6 56911404 56912661 -125502581 + Tigger1 DNA MER2_type 1137 2417 -1 2217 194 34 93 chr6 56912665 56913071 -125502171 - L1MC4a LINE L1 -25 7783 7431 2001 135 0 10 chr6 56913071 56913374 -125501868 - AluSx SINE Alu -8 304 5 2217 194 34 93 chr6 56913374 56913644 -125501598 - L1MC4a LINE L1 -377 7431 7147 207 339 0 0 chr6 56914541 56914603 -125500639 + L2 LINE L2 3246 3307 -6 878 181 72 0 chr6 56914710 56914876 -125500366 - MER20 DNA MER1_type -2 217 40 596 165 31 0 chr6 56915918 56916015 -125499227 - MER5A DNA MER1_type -79 110 11 902 184 24 38 chr6 56916610 56916822 -125498420 + MER3 DNA MER1_type 1 209 0 273 290 48 28 chr6 56917048 56917193 -125498049 - L1ME4a LINE L1 -18 6103 5956 2179 101 3 3 chr6 56917271 56917558 -125497684 - AluSq SINE Alu -26 287 1 1843 171 0 3 chr6 56917558 56917861 -125497381 - AluJo SINE Alu -7 305 3 358 259 52 91 chr6 56918967 56919199 -125496043 + MIR SINE MIR 9 231 -31 294 205 0 0 chr6 56919419 56919502 -125495740 + (TA)n Simple_repeat Simple_repeat 1 83 0 921 261 55 8 chr6 56919504 56919742 -125495500 - MIR SINE MIR -12 250 2 221 271 34 0 chr6 56920372 56920431 -125494811 - L2 LINE L2 -2 3311 3251 22 0 0 0 chr6 56920592 56920614 -125494628 + AT_rich Low_complexity Low_complexity 1 22 0 380 250 54 68 chr6 56921238 56921386 -125493856 - MER5A DNA MER1_type -6 183 38 21 0 0 0 chr6 56923331 56923352 -125491890 + AT_rich Low_complexity Low_complexity 1 21 0 1189 302 74 17 chr6 56923974 56924724 -125490518 - L2 LINE L2 -8 3305 2505 1484 188 11 0 chr6 56924807 56925084 -125490158 - L1MC1 LINE L1 0 6333 6054 357 211 50 145 chr6 56925188 56925430 -125489812 + MER41B LTR ERV1 55 427 -208 2352 94 3 0 chr6 56925431 56925729 -125489513 - AluSx SINE Alu -12 300 2 3878 182 52 16 chr6 56925954 56926952 -125488290 - L1MC2 LINE L1 -280 6064 5032 2204 275 83 39 chr6 56926956 56927839 -125487403 - L2 LINE L2 -962 2352 1431 2410 85 3 0 chr6 56929692 56929998 -125485244 - AluSp SINE Alu -3 310 4 21 0 0 0 chr6 56930219 56930240 -125485002 + AT_rich Low_complexity Low_complexity 1 21 0 2166 116 0 13 chr6 56930240 56930550 -125484692 - AluSg SINE Alu -4 306 1 610 195 59 0 chr6 56932475 56932593 -125482649 + FLAM_A SINE Alu 1 125 -8 600 53 0 0 chr6 56932602 56932678 -125482564 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 2114 271 92 15 chr6 56933244 56934323 -125480919 + L2 LINE L2 2155 3311 -2 1268 93 10 31 chr6 56934592 56934786 -125480456 - L1PB1 LINE L1 0 6151 5962 281 267 99 20 chr6 56934854 56934955 -125480287 - MIR SINE MIR -151 111 3 327 290 76 38 chr6 56936371 56936502 -125478740 + MIR SINE MIR 20 155 -107 346 255 0 41 chr6 56936808 56936906 -125478336 + MIR SINE MIR 123 216 -46 252 367 13 0 chr6 56937091 56937170 -125478072 + L2 LINE L2 3193 3272 0 208 325 44 18 chr6 56937441 56937555 -125477687 + L2 LINE L2 3184 3300 -13 183 80 0 0 chr6 56937555 56937580 -125477662 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 405 305 35 20 chr6 56937590 56937793 -125477449 - Charlie8 DNA MER1_type -2211 206 1 363 350 29 21 chr6 56937898 56938038 -125477204 - MIR3 SINE MIR -63 145 5 487 329 155 37 chr6 56938380 56938781 -125476461 - MLT1J LTR MaLR -61 450 3 252 0 0 0 chr6 56938860 56938888 -125476354 + (T)n Simple_repeat Simple_repeat 1 28 0 2067 205 67 28 chr6 56939251 56939735 -125475507 - MLT1D LTR MaLR 0 555 1 329 312 166 6 chr6 56939755 56939912 -125475330 - MIR SINE MIR 0 262 81 810 265 49 35 chr6 56942472 56942579 -125472663 - L2 LINE L2 -14 3299 3195 231 36 0 0 chr6 56942579 56942607 -125472635 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 306 50 0 0 chr6 56942606 56942646 -125472596 + (GA)n Simple_repeat Simple_repeat 1 40 0 810 265 49 35 chr6 56942607 56942825 -125472417 - L2 LINE L2 -118 3195 3009 2113 130 0 3 chr6 56943060 56943352 -125471890 + AluSx SINE Alu 1 291 -21 246 326 0 0 chr6 56944031 56944129 -125471113 - L1ME LINE L1 -303 5818 5721 21 0 0 0 chr6 56944224 56944245 -125470997 + AT_rich Low_complexity Low_complexity 1 21 0 270 299 37 63 chr6 56944424 56944960 -125470282 - L1ME LINE L1 -1148 4998 4477 287 289 39 23 chr6 56945007 56945135 -125470107 - LTR67 LTR ERVL 0 557 428 318 176 65 43 chr6 56945837 56945932 -125469310 + MER91B DNA MER1_type 1 98 -92 358 205 90 0 chr6 56945843 56945921 -125469321 - MER91C DNA MER1_type 0 140 56 21 36 0 0 chr6 56946601 56946629 -125468613 + AT_rich Low_complexity Low_complexity 1 28 0 2052 95 60 0 chr6 56946938 56947222 -125468020 + AluSq SINE Alu 1 301 -12 405 301 38 0 chr6 56947533 56947666 -125467576 - MIR SINE MIR -80 182 45 305 308 45 15 chr6 56949156 56949289 -125465953 - HAL1 LINE L1 -754 1753 1617 4228 147 32 23 chr6 56949618 56950313 -125464929 + L1MA4 LINE L1 5290 6068 -232 2088 120 0 23 chr6 56950313 56950613 -125464629 + AluSq SINE Alu 11 303 -10 4228 147 32 23 chr6 56950613 56950847 -125464395 + L1MA4 LINE L1 6068 6298 -2 288 258 12 6 chr6 56951165 56951328 -125463914 + (TA)n Simple_repeat Simple_repeat 2 165 0 1421 172 58 24 chr6 56951529 56951850 -125463392 + AluJo SINE Alu 1 312 0 1535 116 27 4 chr6 56951970 56952195 -125463047 - MER30 DNA MER1_type 0 230 1 434 324 33 44 chr6 56953473 56953719 -125461523 - MIR SINE MIR -10 252 11 282 252 70 35 chr6 56953937 56954052 -125461190 - MIR3 SINE MIR -17 191 73 393 293 64 0 chr6 56955216 56955351 -125459891 + MIR3 SINE MIR 58 201 -7 186 353 16 8 chr6 56955695 56955817 -125459425 - L2 LINE L2 -208 3064 2942 332 326 116 29 chr6 56957224 56957362 -125457880 - MER5A DNA MER1_type -2 187 27 1134 255 97 0 chr6 56957429 56957707 -125457535 - MER58B DNA MER1_type -36 305 1 585 249 66 35 chr6 56957780 56957977 -125457265 + MIR SINE MIR 49 251 -11 218 286 0 32 chr6 56958540 56958603 -125456639 + MIR SINE MIR 41 101 -161 1649 78 74 0 chr6 56958603 56958834 -125456408 - L1PA8 LINE L1 0 6172 5925 1134 301 53 18 chr6 56959230 56959629 -125455613 + LTR16B LTR ERVL 52 464 0 273 219 26 116 chr6 56959779 56959934 -125455308 - L1MC4a LINE L1 -1857 5951 5811 1489 185 32 56 chr6 56959961 56960301 -125454941 - MER44D DNA MER2_type -7 602 1 491 298 98 8 chr6 56960302 56960557 -125454685 - L1MC4a LINE L1 -2005 5803 5526 437 204 133 0 chr6 56961251 56961364 -125453878 + MIR SINE MIR 134 261 -1 221 325 32 32 chr6 56962071 56962194 -125453048 + L2 LINE L2 2509 2631 -683 267 315 76 11 chr6 56962928 56963020 -125452222 + L2 LINE L2 3175 3272 0 298 312 56 0 chr6 56964513 56964638 -125450604 - MER103 DNA DNA -34 132 1 2147 117 3 7 chr6 56964654 56964953 -125450289 + AluSx SINE Alu 1 298 -14 1241 255 138 39 chr6 56965413 56965950 -125449292 + MLT1E3 LTR MaLR 1 590 -34 513 237 52 23 chr6 56966092 56966265 -125448977 + L2 LINE L2 2345 2522 -792 245 238 0 16 chr6 56966259 56966322 -125448920 + L2 LINE L2 3250 3311 -2 * 2216 128 10 0 chr6 56966370 56966674 -125448568 + AluSq SINE Alu 2 308 -5 294 236 32 140 chr6 56966769 56967019 -125448223 + MLT1H LTR MaLR 96 318 -231 436 343 84 0 chr6 56967283 56967426 -125447816 - MIR3 SINE MIR -14 194 40 22 56 0 0 chr6 56968443 56968479 -125446763 + AT_rich Low_complexity Low_complexity 1 36 0 3902 144 14 11 chr6 56968541 56969194 -125446048 + L1PA15 LINE L1 5508 6162 -3 226 273 66 25 chr6 56969213 56969334 -125445908 - L1ME4a LINE L1 -42 6079 5954 399 41 0 0 chr6 56969815 56969864 -125445378 + (TG)n Simple_repeat Simple_repeat 2 50 0 6817 64 6 0 chr6 56970247 56971325 -125443917 - L1PA7 LINE L1 -5 6149 5077 7898 80 8 24 chr6 56971325 56972462 -125442780 + L1PA7 LINE L1 3951 5069 -1077 5263 169 59 159 chr6 56972583 56973434 -125441808 - L1MC3 LINE L1 -6 7779 6986 1422 131 9 0 chr6 56973434 56973656 -125441586 - AluSg/x SINE Alu 0 312 89 5263 169 59 159 chr6 56973656 56974517 -125440725 - L1MC3 LINE L1 -799 6986 6040 1058 171 43 14 chr6 56974691 56974940 -125440302 - L1MC3 LINE L1 -280 6079 5816 284 306 74 22 chr6 56974943 56975254 -125439988 - L1 LINE L1 -1087 5059 4733 42 20 0 0 chr6 56975254 56975303 -125439939 + AT_rich Low_complexity Low_complexity 1 49 0 549 309 107 35 chr6 56975308 56975905 -125439337 - L1 LINE L1 -1438 4708 4046 180 0 0 0 chr6 56976653 56976673 -125438569 + (TG)n Simple_repeat Simple_repeat 1 20 0 428 67 0 44 chr6 56976673 56976763 -125438479 + (TA)n Simple_repeat Simple_repeat 2 87 0 529 236 27 47 chr6 56979328 56979476 -125435766 - MIR SINE MIR -10 252 108 2660 39 0 3 chr6 56979545 56979855 -125435387 - AluY SINE Alu -2 309 1 208 306 0 0 chr6 56979874 56979936 -125435306 + A-rich Low_complexity Low_complexity 3 64 0 958 240 79 44 chr6 56980555 56980922 -125434320 - L1MC4a LINE L1 -1879 5929 5550 1807 126 0 0 chr6 56981147 56981417 -125433825 + AluSg SINE Alu 38 307 0 327 49 0 0 chr6 56982592 56982633 -125432609 + (CA)n Simple_repeat Simple_repeat 2 42 0 1190 137 78 5 chr6 56983174 56983378 -125431864 - MER20 DNA MER1_type 0 219 1 2030 156 11 35 chr6 56983761 56984133 -125431109 - MLT1A1 LTR MaLR 0 365 3 204 295 62 54 chr6 56984338 56984450 -125430792 + L2 LINE L2 3165 3277 -36 478 294 50 0 chr6 56984462 56984581 -125430661 + L2 LINE L2 3148 3272 0 615 308 39 24 chr6 56984946 56985154 -125430088 + MIR SINE MIR 7 217 -45 2162 98 3 41 chr6 56985260 56985575 -125429667 - AluSx SINE Alu -9 303 1 288 0 0 0 chr6 56989134 56989166 -125426076 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 471 63 0 0 chr6 56989165 56989228 -125426014 + (TG)n Simple_repeat Simple_repeat 2 64 0 1964 156 17 97 chr6 56989285 56989495 -125425747 + MSTB LTR MaLR 1 155 -271 995 171 37 14 chr6 56989495 56989712 -125425530 - L1PA13 LINE L1 -8 6155 5934 1964 156 17 97 chr6 56989712 56989964 -125425278 + MSTB LTR MaLR 155 426 0 240 394 43 11 chr6 56989964 56990152 -125425090 - MIR SINE MIR -49 213 20 411 332 95 20 chr6 56991248 56991594 -125423648 - L1ME4a LINE L1 -265 5856 5485 25 0 0 0 chr6 56992339 56992364 -125422878 + AT_rich Low_complexity Low_complexity 1 25 0 742 290 61 17 chr6 56992741 56992972 -125422270 - MIR SINE MIR -2 260 20 40488 50 7 1 chr6 56993073 56999184 -125416058 - L1PA4 LINE L1 0 6155 6 459 329 42 6 chr6 56999420 56999587 -125415655 + MIR SINE MIR 20 192 -70 283 214 79 111 chr6 56999594 56999720 -125415522 + L2 LINE L2 3192 3313 0 2135 134 0 3 chr6 56999762 57000069 -125415173 + AluSg SINE Alu 1 306 -4 207 0 0 0 chr6 57000506 57000529 -125414713 + (TG)n Simple_repeat Simple_repeat 2 24 0 259 262 66 0 chr6 57000794 57000855 -125414387 - MER2 DNA MER2_type 0 345 281 * 740 262 6 0 chr6 57000841 57001005 -125414237 - MER8 DNA MER2_type -72 167 3 25 31 0 0 chr6 57001153 57001185 -125414057 + AT_rich Low_complexity Low_complexity 1 32 0 1754 182 3 7 chr6 57001185 57001476 -125413766 - AluJo SINE Alu -12 300 11 1924 62 8 0 chr6 57001477 57001719 -125413523 - L1PA6 LINE L1 -4 6150 5907 345 269 11 11 chr6 57001739 57001832 -125413410 - MIR SINE MIR -13 249 157 332 225 25 0 chr6 57001984 57002064 -125413178 - MLT1E-int LTR MaLR -1289 82 1 1138 250 76 94 chr6 57002064 57002281 -125412961 - MLT1E LTR MaLR 0 593 374 1750 120 0 4 chr6 57002281 57002522 -125412720 - AluSx SINE Alu -13 299 60 1138 250 76 94 chr6 57002522 57002907 -125412335 - MLT1E LTR MaLR -219 374 2 243 233 311 29 chr6 57002908 57003011 -125412231 - MIR SINE MIR -130 132 1 539 146 6 134 chr6 57004525 57004696 -125410546 + LTR33 LTR ERVL 1 149 -372 498 244 0 0 chr6 57004693 57004812 -125410430 + LTR33 LTR ERVL 397 515 -6 * 216 222 22 0 chr6 57005652 57005697 -125409545 + MIR3 SINE MIR 115 160 -48 995 111 6 0 chr6 57007552 57007714 -125407528 + L1MB3 LINE L1 6006 6168 -15 1526 150 24 103 chr6 57008482 57008821 -125406421 - AluJb SINE Alu 0 312 1 2065 129 3 7 chr6 57009528 57009830 -125405412 + AluSx SINE Alu 1 301 -11 210 250 153 48 chr6 57010321 57010445 -125404797 - MIR SINE MIR -3 259 123 316 333 0 20 chr6 57010968 57011067 -125404175 + MIR3 SINE MIR 106 202 -6 3316 90 5 5 chr6 57013463 57013907 -125401335 + MLT2A1 LTR ERVL 1 444 0 39859 72 19 2 chr6 57013907 57019305 -125395937 + HERVL-A1 LTR ERVL 1 5490 -164 22 35 0 0 chr6 57019448 57019477 -125395765 + AT_rich Low_complexity Low_complexity 1 29 0 2172 61 0 0 chr6 57019543 57019821 -125395421 - L1PA3 LINE L1 -3 6152 5875 998 75 12 12 chr6 57019821 57019981 -125395261 + HERVL-A1 LTR ERVL 5495 5654 0 2749 77 31 5 chr6 57019981 57020370 -125394872 + MLT2A1 LTR ERVL 1 399 -45 246 82 16 33 chr6 57020371 57020432 -125394810 + (TATAA)n Simple_repeat Simple_repeat 4 63 0 356 109 0 0 chr6 57020434 57020489 -125394753 + MLT2A1 LTR ERVL 399 453 0 334 405 139 7 chr6 57020727 57021021 -125394221 + L2 LINE L2 2932 3264 -8 470 259 18 0 chr6 57021351 57021463 -125393779 - MER81 DNA DNA 0 114 1 189 342 13 0 chr6 57021696 57021772 -125393470 - L2 LINE L2 -8 3305 3229 1048 216 115 96 chr6 57021816 57022345 -125392897 + MLT1F LTR MaLR 2 540 -2 183 232 107 54 chr6 57022400 57022456 -125392786 + L2 LINE L2 3214 3272 0 412 335 22 49 chr6 57022956 57023141 -125392101 + MIR3 SINE MIR 2 181 -27 298 163 0 0 chr6 57023517 57023566 -125391676 + L2 LINE L2 3265 3313 0 194 354 106 6 chr6 57023730 57023891 -125391351 + MIR SINE MIR 83 259 -3 702 149 4 208 chr6 57025747 57026016 -125389226 - MER20 DNA MER1_type -4 215 2 301 245 75 80 chr6 57027265 57027465 -125387777 + L1MC4 LINE L1 7832 8030 -12 304 293 12 0 chr6 57029088 57029170 -125386072 - MIR SINE MIR -112 150 68 232 321 73 46 chr6 57029482 57029591 -125385651 - MIR3 SINE MIR -48 160 49 2803 130 12 2 chr6 57030124 57030547 -125384695 - MSTA LTR MaLR -1 427 1 2127 110 31 0 chr6 57031486 57031776 -125383466 - AluSq SINE Alu -14 299 1 280 364 156 35 chr6 57032816 57033854 -125381388 + L2 LINE L2 1238 2401 -913 2468 65 0 19 chr6 57033885 57034192 -125381050 + AluY SINE Alu 1 301 -10 303 28 0 0 chr6 57034192 57034228 -125381014 + (TA)n Simple_repeat Simple_repeat 2 37 0 13895 182 36 13 chr6 57034229 57040151 -125375091 - L1PB2 LINE L1 -8 6859 626 1134 147 5 0 chr6 57040148 57040339 -125374903 - L1PB2 LINE L1 -6665 198 7 * 855 176 72 10 chr6 57040512 57040705 -125374537 - L1MA9 LINE L1 -2 6310 6106 185 374 12 24 chr6 57040717 57040800 -125374442 + L2 LINE L2 2555 2636 -678 260 352 11 0 chr6 57040816 57040904 -125374338 - L2 LINE L2 -665 2649 2561 208 313 46 30 chr6 57040904 57041035 -125374207 - L2 LINE L2 -1945 1369 1237 378 209 23 0 chr6 57041118 57041204 -125374038 + MLT1D-int LTR MaLR 1269 1356 -15 2092 199 49 20 chr6 57041222 57041709 -125373533 + MLT1D LTR MaLR 5 505 0 1409 191 0 0 chr6 57041984 57042220 -125373022 + AluJb SINE Alu 1 236 -76 1044 205 20 5 chr6 57043385 57043580 -125371662 + MER58A DNA MER1_type 12 209 -15 10945 98 9 1 chr6 57044157 57045753 -125369489 - L1P LINE L1 -2299 3847 2239 242 239 174 46 chr6 57047052 57047161 -125368081 + MIR SINE MIR 112 234 -28 729 245 99 10 chr6 57048303 57048495 -125366747 - MER58A DNA MER1_type -15 209 1 609 329 58 12 chr6 57048513 57048756 -125366486 - MIR SINE MIR -6 256 3 436 195 0 0 chr6 57049862 57049944 -125365298 - MLT1A1 LTR MaLR 0 365 284 695 273 31 21 chr6 57049948 57050008 -125365234 - L1MEd LINE L1 -3167 2962 2904 2411 77 0 0 chr6 57050008 57050306 -125364936 + AluY SINE Alu 1 298 -13 695 273 31 21 chr6 57050306 57050531 -125364711 - L1MEd LINE L1 -3225 2904 2674 1663 137 4 0 chr6 57050561 57050809 -125364433 - L1PA15 LINE L1 -21 6144 5896 386 241 52 0 chr6 57051460 57051576 -125363666 - L1MEd LINE L1 -4597 1532 1411 308 250 77 39 chr6 57051651 57051755 -125363487 - L1MC4a LINE L1 -1535 6273 6166 554 48 0 71 chr6 57051755 57051839 -125363403 - L1PA3 LINE L1 -5 6150 6073 679 220 106 51 chr6 57051908 57052319 -125362923 - L1MEd LINE L1 -4797 1332 903 271 255 21 53 chr6 57052628 57052722 -125362520 - L1MEd LINE L1 -5494 625 535 3653 102 50 9 chr6 57053088 57053647 -125361595 - L1PA11 LINE L1 -8 6166 5585 457 66 14 80 chr6 57053701 57053918 -125361324 + (TA)n Simple_repeat Simple_repeat 1 202 0 23 0 0 0 chr6 57054012 57054035 -125361207 + AT_rich Low_complexity Low_complexity 1 23 0 425 254 53 0 chr6 57054698 57054812 -125360430 + MIR SINE MIR 90 209 -53 1376 162 60 60 chr6 57054812 57055114 -125360128 + AluJb SINE Alu 1 302 -10 288 0 0 0 chr6 57056187 57056219 -125359023 + (TG)n Simple_repeat Simple_repeat 1 32 0 4938 203 26 6 chr6 57056243 57056394 -125358848 - L1MA10 LINE L1 -14 6320 6174 306 50 0 0 chr6 57056394 57056434 -125358808 + (TTA)n Simple_repeat Simple_repeat 3 42 0 4938 203 26 6 chr6 57056434 57057317 -125357925 - L1MA10 LINE L1 -160 6174 5265 307 273 65 39 chr6 57058043 57058197 -125357045 + L2 LINE L2 3111 3268 -4 402 328 65 40 chr6 57058597 57058816 -125356426 + MIR SINE MIR 7 230 -32 235 340 0 0 chr6 57058854 57058907 -125356335 + L2 LINE L2 3201 3253 -19 1139 192 86 32 chr6 57059397 57059710 -125355532 - L1MA9 LINE L1 -38 6274 5945 733 231 41 68 chr6 57059992 57060213 -125355029 - MER20 DNA MER1_type -4 215 1 287 290 155 0 chr6 57060686 57060829 -125354413 + MIR3 SINE MIR 36 208 0 709 285 53 29 chr6 57062087 57062477 -125352765 - LTR16A LTR ERVL 0 450 16 17637 34 2 0 chr6 57062875 57065028 -125350214 - L1PA3 LINE L1 -993 5153 2997 7449 34 0 7 chr6 57065028 57066007 -125349235 + L1PA3 LINE L1 5183 6155 0 2137 115 3 6 chr6 57066525 57066837 -125348405 - AluSq SINE Alu -2 311 1 231 239 141 0 chr6 57067001 57067072 -125348170 - MLT1J2 LTR MaLR -27 423 343 507 276 92 31 chr6 57067151 57067347 -125347895 - MLT1J2 LTR MaLR -242 208 1 297 319 76 13 chr6 57067485 57067642 -125347600 - L2 LINE L2 -1216 2098 1932 1298 260 89 0 chr6 57067732 57068124 -125347118 + L1ME3A LINE L1 5652 6078 -92 1830 238 88 0 chr6 57068135 57068589 -125346653 + MLT1D LTR MaLR 12 505 0 344 363 42 8 chr6 57068641 57068878 -125346364 - L2 LINE L2 -1356 1958 1714 1273 266 93 61 chr6 57069161 57069285 -125345957 - MLT1H LTR MaLR 0 549 430 1261 196 72 34 chr6 57069285 57069576 -125345666 - AluJb SINE Alu -10 302 1 1273 266 93 61 chr6 57069576 57069978 -125345264 - MLT1H LTR MaLR -119 430 6 2254 96 10 10 chr6 57071301 57071603 -125343639 - AluY SINE Alu -9 302 1 21 0 0 0 chr6 57071606 57071627 -125343615 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 57071769 57071792 -125343450 + AT_rich Low_complexity Low_complexity 1 23 0 208 261 0 0 chr6 57071792 57071838 -125343404 + L2 LINE L2 3264 3309 -4 196 339 0 0 chr6 57072494 57072556 -125342686 - L2 LINE L2 -1 3271 3210 349 245 102 0 chr6 57072587 57072685 -125342557 - MIR SINE MIR -138 124 17 384 327 50 13 chr6 57072709 57072868 -125342374 + MIR SINE MIR 83 247 -15 512 248 40 13 chr6 57072885 57073034 -125342208 - MIR3 SINE MIR -40 168 16 246 218 57 5 chr6 57073499 57073566 -125341676 - MIR SINE MIR -65 143 77 750 184 6 18 chr6 57073682 57073845 -125341397 + MER96B DNA MER1_type? 16 176 -241 198 0 0 0 chr6 57074993 57075015 -125340227 + (A)n Simple_repeat Simple_repeat 1 22 0 669 240 22 33 chr6 57075747 57075930 -125339312 - LTR8A LTR ERV1 -62 665 485 224 373 127 16 chr6 57077503 57077629 -125337613 - L2 LINE L2 0 3272 3133 227 307 79 0 chr6 57078117 57078218 -125337024 - MIR SINE MIR -31 231 123 315 344 0 16 chr6 57079683 57079805 -125335437 - MIR SINE MIR -115 147 28 475 292 27 89 chr6 57081104 57081361 -125333881 + MIR SINE MIR 13 253 -9 252 278 13 48 chr6 57082490 57082590 -125332652 - MER5A DNA MER1_type -1 188 87 195 100 0 0 chr6 57082590 57082620 -125332622 + (TG)n Simple_repeat Simple_repeat 2 31 0 252 278 13 48 chr6 57082620 57082636 -125332606 - MER5A DNA MER1_type -102 87 72 542 255 45 38 chr6 57082640 57082797 -125332445 - MER63A DNA MER1_type 0 210 53 1041 124 0 37 chr6 57082819 57082980 -125332262 + AluSg/x SINE Alu 137 291 -21 7928 56 1 9 chr6 57083114 57084119 -125331123 + L1P LINE L1 2 998 -5148 394 169 0 0 chr6 57084253 57084318 -125330924 + MSTB1 LTR MaLR 368 432 0 219 399 43 11 chr6 57084318 57084506 -125330736 - MIR SINE MIR -49 213 20 226 350 68 26 chr6 57085682 57085948 -125329294 - L1MC/D LINE L1 -2048 5760 5484 25 0 0 0 chr6 57086692 57086717 -125328525 + AT_rich Low_complexity Low_complexity 1 25 0 735 290 61 17 chr6 57087094 57087325 -125327917 - MIR SINE MIR -2 260 20 43295 51 7 1 chr6 57087426 57093537 -125321705 - L1PA4 LINE L1 0 6155 6 445 329 42 6 chr6 57093773 57093940 -125321302 + MIR SINE MIR 20 192 -70 276 214 79 111 chr6 57093947 57094073 -125321169 + L2 LINE L2 3192 3313 0 2119 134 0 3 chr6 57094115 57094422 -125320820 + AluSg SINE Alu 1 306 -4 207 0 0 0 chr6 57094859 57094882 -125320360 + (TG)n Simple_repeat Simple_repeat 2 24 0 810 261 11 28 chr6 57095147 57095358 -125319884 - MER8 DNA MER2_type 0 345 3 25 31 0 0 chr6 57095506 57095538 -125319704 + AT_rich Low_complexity Low_complexity 1 32 0 1729 182 3 7 chr6 57095538 57095829 -125319413 - AluJo SINE Alu -12 300 11 2049 62 8 0 chr6 57095830 57096072 -125319170 - L1PA6 LINE L1 -4 6150 5907 337 269 11 11 chr6 57096092 57096185 -125319057 - MIR SINE MIR -13 249 157 360 321 80 0 chr6 57096230 57096417 -125318825 - MLT1E-int LTR MaLR -1169 202 1 1358 245 78 96 chr6 57096417 57096634 -125318608 - MLT1E LTR MaLR 0 593 374 1740 120 0 4 chr6 57096634 57096875 -125318367 - AluSx SINE Alu -13 299 60 1358 245 78 96 chr6 57096875 57097260 -125317982 - MLT1E LTR MaLR -219 374 2 237 233 311 29 chr6 57097261 57097364 -125317878 - MIR SINE MIR -130 132 1 594 146 6 134 chr6 57098878 57099049 -125316193 + LTR33 LTR ERVL 1 149 -372 543 244 0 0 chr6 57099046 57099165 -125316077 + LTR33 LTR ERVL 397 515 -6 * 213 222 22 0 chr6 57100005 57100050 -125315192 + MIR3 SINE MIR 115 160 -48 1076 111 6 0 chr6 57101905 57102067 -125313175 + L1MB3 LINE L1 6006 6168 -15 1499 150 24 103 chr6 57102835 57103174 -125312068 - AluJb SINE Alu 0 312 1 2063 129 3 7 chr6 57103881 57104183 -125311059 + AluSx SINE Alu 1 301 -11 202 250 153 48 chr6 57104674 57104798 -125310444 - MIR SINE MIR -3 259 123 306 333 0 20 chr6 57105321 57105420 -125309822 + MIR3 SINE MIR 106 202 -6 3563 88 5 5 chr6 57107816 57108260 -125306982 + MLT2A1 LTR ERVL 1 444 0 42542 73 19 2 chr6 57108260 57113658 -125301584 + HERVL-A1 LTR ERVL 1 5490 -164 22 35 0 0 chr6 57113801 57113830 -125301412 + AT_rich Low_complexity Low_complexity 1 29 0 43181 55 3 1 chr6 57113896 57120038 -125295204 - L1PA3 LINE L1 -3 6152 1 689 240 100 18 chr6 57120048 57120277 -125294965 - L1 LINE L1 -1189 4957 4710 451 280 8 0 chr6 57120342 57120460 -125294782 - AluJb SINE Alu -81 231 113 17812 45 5 0 chr6 57120561 57122765 -125292477 + L1P LINE L1 1006 3219 -2927 701 225 12 0 chr6 57174585 57174754 -125240488 - L1 LINE L1 -1549 4597 4427 * 5906 127 9 5 chr6 57174752 57175819 -125239423 + L1PB1 LINE L1 5078 6144 -7 221 56 0 28 chr6 57175821 57175857 -125239385 + (TA)n Simple_repeat Simple_repeat 1 35 0 1369 176 47 3 chr6 57176418 57176719 -125238523 - MER33 DNA MER1_type 0 324 11 425 257 117 87 chr6 57177782 57178047 -125237195 + L2 LINE L2 1549 1821 -1493 1585 208 3 3 chr6 57178183 57178481 -125236761 + AluJo SINE Alu 1 298 -14 1376 215 140 12 chr6 57178496 57178910 -125236332 - MLT1C LTR MaLR 0 467 1 188 146 0 42 chr6 57179112 57179160 -125236082 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 211 301 39 58 chr6 57179170 57179273 -125235969 - L2 LINE L2 -5 3308 3208 529 269 50 12 chr6 57180056 57180216 -125235026 + MIR SINE MIR 41 206 -56 934 179 113 118 chr6 57180309 57180655 -125234587 + MER2 DNA MER2_type 1 344 0 712 231 123 77 chr6 57181646 57182335 -125232907 - L1MC5 LINE L1 -38 7923 7203 24 32 0 0 chr6 57182356 57182387 -125232855 + AT_rich Low_complexity Low_complexity 1 31 0 1269 246 70 3 chr6 57182956 57183286 -125231956 + MLT1A1 LTR MaLR 1 352 -13 783 175 9 158 chr6 57184020 57184309 -125230933 - MIR SINE MIR 0 262 16 1255 188 100 44 chr6 57185373 57185713 -125229529 + MLT1A1 LTR MaLR 5 363 -2 243 61 0 0 chr6 57185772 57185805 -125229437 + (CAT)n Simple_repeat Simple_repeat 1 33 0 332 285 63 38 chr6 57186012 57186170 -125229072 + MER5A DNA MER1_type 9 170 -19 351 173 8 0 chr6 57186687 57186769 -125228473 - MSTB1 LTR MaLR -4 428 366 221 299 35 17 chr6 57187925 57188099 -125227143 + (TA)n Simple_repeat Simple_repeat 2 178 0 201 304 13 25 chr6 57188480 57188559 -125226683 + GA-rich Low_complexity Low_complexity 3 80 0 277 293 24 16 chr6 57189311 57189434 -125225808 + LTR67 LTR ERVL 434 557 0 304 233 0 0 chr6 57190493 57190553 -125224689 + L2 LINE L2 3254 3313 0 22 56 0 0 chr6 57190674 57190710 -125224532 + AT_rich Low_complexity Low_complexity 1 36 0 1608 187 70 22 chr6 57190720 57191174 -125224068 - L1MC3 LINE L1 -1822 5963 5488 186 299 75 0 chr6 57191355 57191422 -125223820 + L2 LINE L2 3188 3259 -13 629 328 9 38 chr6 57193386 57193731 -125221511 - MLT1L LTR MaLR -276 339 5 563 286 88 50 chr6 57193874 57194294 -125220948 + L1M3e LINE L1 1302 1737 -5293 30 0 0 0 chr6 57194380 57194410 -125220832 + AT_rich Low_complexity Low_complexity 1 30 0 353 250 36 9 chr6 57194515 57194627 -125220615 - MER94 DNA DNA -19 115 1 802 173 23 84 chr6 57196703 57196917 -125218325 - MER20 DNA MER1_type -18 201 1 375 276 56 61 chr6 57198248 57198432 -125216810 + MIR3 SINE MIR 18 194 -44 180 306 111 14 chr6 57198552 57198624 -125216618 + L2 LINE L2 3187 3265 -7 * 293 267 7 82 chr6 57198599 57198734 -125216508 - MIR SINE MIR 0 262 138 258 224 35 0 chr6 57198767 57198825 -125216417 + MLT1J1 LTR MaLR 49 108 -447 622 148 6 31 chr6 57199415 57199577 -125215665 + CT-rich Low_complexity Low_complexity 4 161 0 260 273 13 19 chr6 57199701 57199855 -125215387 + A-rich Low_complexity Low_complexity 1 153 0 911 194 51 46 chr6 57201978 57202195 -125213047 + MER20 DNA MER1_type 1 218 -1 22 0 0 0 chr6 57203442 57203464 -125211778 + AT_rich Low_complexity Low_complexity 1 22 0 354 245 113 0 chr6 57204155 57204261 -125210981 + L2 LINE L2 2634 2751 -563 395 289 58 40 chr6 57204271 57204496 -125210746 + MLT1C LTR MaLR 19 247 -220 1060 192 10 5 chr6 57204660 57204868 -125210374 + MLT1C LTR MaLR 257 465 -2 1020 309 63 29 chr6 57204927 57205374 -125209868 + L2 LINE L2 2848 3309 -4 398 123 0 0 chr6 57205688 57205753 -125209489 + MER53 DNA DNA 125 189 0 528 253 78 0 chr6 57205787 57205941 -125209301 + MLT1J1 LTR MaLR 227 392 -54 411 292 56 7 chr6 57206049 57206193 -125209049 - MIR3 SINE MIR -23 185 35 828 183 0 0 chr6 57206821 57206947 -125208295 + FAM SINE Alu 22 147 -38 351 116 14 43 chr6 57206955 57207024 -125208218 + MSTA LTR MaLR 19 85 -343 234 246 18 114 chr6 57207178 57207292 -125207950 + MER5C DNA MER1_type 1 103 -221 228 312 138 22 chr6 57207630 57207861 -125207381 - MLT1J2 LTR MaLR -7 443 186 32 0 0 0 chr6 57208394 57208426 -125206816 + AT_rich Low_complexity Low_complexity 1 32 0 273 297 72 9 chr6 57209001 57209112 -125206130 + MIR3 SINE MIR 60 177 -31 768 212 28 71 chr6 57210046 57210258 -125204984 - MER20 DNA MER1_type 0 219 17 236 296 74 0 chr6 57211943 57212024 -125203218 + L2 LINE L2 3208 3294 -19 21 82 0 0 chr6 57213426 57213475 -125201767 + AT_rich Low_complexity Low_complexity 1 49 0 2007 142 20 3 chr6 57214411 57214707 -125200535 + AluSq SINE Alu 1 301 -12 1435 214 76 16 chr6 57215786 57216172 -125199070 - MLT2B2 LTR ERVL 0 414 1 361 244 188 0 chr6 57216177 57216337 -125198905 + L1ME4a LINE L1 5826 6015 -106 454 297 46 17 chr6 57216395 57216570 -125198672 - MIR SINE MIR -9 253 74 403 278 40 33 chr6 57216575 57216726 -125198516 - MIR SINE MIR -109 153 2 183 235 118 47 chr6 57217406 57217491 -125197751 - MIR SINE MIR -77 185 95 192 77 0 0 chr6 57219081 57219107 -125196135 + (GA)n Simple_repeat Simple_repeat 2 27 0 239 0 32 0 chr6 57219380 57219411 -125195831 + (TG)n Simple_repeat Simple_repeat 2 33 0 10218 38 1 8 chr6 57220848 57222873 -125192369 + L1PA4 LINE L1 4132 6155 0 549 192 0 0 chr6 57222895 57223025 -125192217 + CT-rich Low_complexity Low_complexity 3 132 0 530 284 71 42 chr6 57223970 57224209 -125191033 - MIR SINE MIR -2 260 15 322 179 0 0 chr6 57224579 57224635 -125190607 - L1PB4 LINE L1 -41 6115 6060 * 357 226 22 36 chr6 57224633 57224770 -125190472 + L1 LINE L1 4851 4985 -1161 772 320 31 11 chr6 57225051 57225402 -125189840 - L2 LINE L2 -208 3105 2749 322 336 67 0 chr6 57225502 57225621 -125189621 - L2 LINE L2 -1 3271 3145 236 270 16 111 chr6 57225647 57225836 -125189406 - L1ME LINE L1 -451 5670 5500 319 302 52 26 chr6 57226149 57226265 -125188977 + L2 LINE L2 3146 3264 -8 347 343 57 0 chr6 57226281 57226386 -125188856 - MIR SINE MIR -136 126 16 1361 294 124 34 chr6 57226572 57227155 -125188087 + L2 LINE L2 2232 2761 -552 261 0 0 0 chr6 57227155 57227184 -125188058 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1361 294 124 34 chr6 57227184 57227574 -125187668 + L2 LINE L2 2761 3313 0 285 29 0 0 chr6 57227968 57228002 -125187240 + (TG)n Simple_repeat Simple_repeat 2 35 0 212 167 0 0 chr6 57228383 57228425 -125186817 + A-rich Low_complexity Low_complexity 1 42 0 688 285 39 42 chr6 57228730 57228989 -125186253 + MIR SINE MIR 5 262 0 745 272 72 23 chr6 57229015 57229364 -125185878 - L1MC4a LINE L1 -1945 5863 5498 296 293 47 73 chr6 57229522 57229713 -125185529 - MIR SINE MIR -64 198 13 198 0 0 0 chr6 57229746 57229768 -125185474 + (TAA)n Simple_repeat Simple_repeat 1 22 0 191 211 0 58 chr6 57229830 57229882 -125185360 - L2 LINE L2 -4 3309 3261 252 122 0 0 chr6 57229889 57229930 -125185312 + (TC)n Simple_repeat Simple_repeat 1 41 0 400 226 110 41 chr6 57229940 57230086 -125185156 - MIR SINE MIR -58 204 49 381 234 36 9 chr6 57230344 57230455 -125184787 + MLT1J2 LTR MaLR 1 114 -336 1444 251 62 45 chr6 57230883 57231416 -125183826 + MLT1F LTR MaLR 1 542 0 226 363 0 44 chr6 57231890 57231981 -125183261 + MIR SINE MIR 18 104 -104 413 288 42 8 chr6 57232116 57232234 -125183008 - L2 LINE L2 -7 3306 3185 2125 206 21 39 chr6 57232239 57232753 -125182489 - MLT1D LTR MaLR 0 505 1 263 173 272 0 chr6 57234040 57234121 -125181121 - MIR SINE MIR -14 248 146 2144 92 17 3 chr6 57234275 57234570 -125180672 - AluY SINE Alu -1 310 12 329 273 55 36 chr6 57234599 57234709 -125180533 - MIR SINE MIR -102 160 49 1572 230 115 47 chr6 57235060 57235661 -125179581 - L1MC4a LINE L1 -1888 5920 5279 274 301 12 0 chr6 57235661 57235744 -125179498 + (CATA)n Simple_repeat Simple_repeat 3 86 0 626 314 79 42 chr6 57235995 57236918 -125178324 - L1MC4a LINE L1 -1313 4833 3877 210 150 0 0 chr6 57237380 57237420 -125177822 + (GA)n Simple_repeat Simple_repeat 1 40 0 33 25 0 0 chr6 57238364 57238404 -125176838 + AT_rich Low_complexity Low_complexity 1 40 0 323 306 45 0 chr6 57238580 57238691 -125176551 + MIR SINE MIR 20 135 -127 243 88 0 0 chr6 57239304 57239338 -125175904 + (T)n Simple_repeat Simple_repeat 1 34 0 2611 96 253 26 chr6 57240390 57240900 -125174342 + pTR5 LTR ERV1 88 2025 -413 370 231 29 19 chr6 57240900 57241004 -125174238 + LTR30 LTR ERV1 544 648 -74 1573 101 0 0 chr6 57241005 57241223 -125174019 + pTR5 LTR ERV1 175 392 -2046 1330 232 21 3 chr6 57241528 57241817 -125173425 - L1MC/D LINE L1 -615 5744 5451 355 272 110 58 chr6 57242198 57242371 -125172871 + MIR3 SINE MIR 20 201 -7 22 0 0 0 chr6 57242456 57242478 -125172764 + AT_rich Low_complexity Low_complexity 1 22 0 1403 196 85 3 chr6 57242923 57243240 -125172002 + MER2 DNA MER2_type 2 344 0 267 378 46 31 chr6 57243241 57243500 -125171742 + L2 LINE L2 2574 2836 -478 193 329 12 24 chr6 57243792 57243877 -125171365 + L2 LINE L2 3226 3309 -4 911 286 4 30 chr6 57244139 57244405 -125170837 - MIR SINE MIR 0 262 4 220 214 0 0 chr6 57246496 57246538 -125168704 + (TATG)n Simple_repeat Simple_repeat 3 44 0 235 308 128 0 chr6 57247802 57247935 -125167307 + MIR SINE MIR 112 261 -1 29 0 0 0 chr6 57248696 57248725 -125166517 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr6 57248851 57248894 -125166348 + AT_rich Low_complexity Low_complexity 1 43 0 1891 161 3 7 chr6 57249251 57249556 -125165686 - AluSx SINE Alu -8 304 1 693 262 41 0 chr6 57249615 57249787 -125165455 - MIR SINE MIR -50 212 34 4055 178 28 50 chr6 57251020 57252039 -125163203 - L1MB8 LINE L1 -1 6177 5164 1489 191 25 27 chr6 57252057 57252423 -125162819 - Charlie1 DNA MER1_type -133 2628 2264 2195 204 62 7 chr6 57252430 57252979 -125162263 - L1MB8 LINE L1 -978 5168 4590 9136 81 4 1 chr6 57253099 57254326 -125160916 + L1P LINE L1 7 1237 -4909 22 35 0 0 chr6 57254966 57254995 -125160247 + AT_rich Low_complexity Low_complexity 1 29 0 1876 124 7 7 chr6 57255540 57255813 -125159429 + AluSx SINE Alu 10 282 -30 207 0 0 0 chr6 57255817 57255840 -125159402 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 300 234 26 13 chr6 57256650 57256727 -125158515 - MIR SINE MIR -152 110 33 215 298 0 0 chr6 57257287 57257334 -125157908 + polypurine Low_complexity Low_complexity 2 48 0 305 316 101 6 chr6 57257528 57257686 -125157556 + MIR SINE MIR 84 256 -6 1660 95 14 0 chr6 57259003 57259249 -125155993 - AluY SINE Alu 0 305 57 283 343 47 23 chr6 57260147 57260319 -125154923 + MER5A DNA MER1_type 2 188 -1 2416 200 59 7 chr6 57260338 57260883 -125154359 - MER34C LTR ERV1 -2 583 11 787 288 214 7 chr6 57261497 57261903 -125153339 - L2 LINE L2 -1 3312 2823 584 257 60 78 chr6 57261933 57262151 -125153091 - MIR SINE MIR 0 262 49 787 175 9 158 chr6 57263087 57263376 -125151866 + MIR SINE MIR 16 262 0 911 264 76 45 chr6 57263944 57264326 -125150916 + MLT1H1 LTR MaLR 1 394 -161 453 289 28 0 chr6 57264378 57264520 -125150722 + MLT1H1 LTR MaLR 364 509 -46 1110 193 59 116 chr6 57264545 57264950 -125150292 + MSTD LTR MaLR 15 396 0 204 186 93 0 chr6 57265123 57265166 -125150076 + MER5B DNA MER1_type 1 47 -131 250 247 26 52 chr6 57266451 57266528 -125148714 - L2 LINE L2 -60 3253 3179 25 0 0 0 chr6 57266544 57266569 -125148673 + AT_rich Low_complexity Low_complexity 1 25 0 1240 252 136 18 chr6 57267728 57268177 -125147065 - MLT1D LTR MaLR -3 502 1 191 408 69 0 chr6 57268205 57268335 -125146907 + L2 LINE L2 3127 3265 -7 183 286 48 0 chr6 57268845 57268887 -125146355 - MIR SINE MIR -164 98 55 2095 119 30 0 chr6 57269077 57269379 -125145863 - AluSp SINE Alu -2 311 1 351 0 0 0 chr6 57269631 57269670 -125145572 + (TG)n Simple_repeat Simple_repeat 2 40 0 460 313 0 17 chr6 57270626 57270741 -125144501 + L2 LINE L2 3141 3253 -19 252 292 123 35 chr6 57270785 57270956 -125144286 - L2 LINE L2 -5 3308 3123 1446 226 33 28 chr6 57271189 57271552 -125143690 - MLT1A1 LTR MaLR 0 365 1 229 363 62 62 chr6 57271567 57271727 -125143515 + MIR SINE MIR 34 193 -69 188 277 0 0 chr6 57271994 57272041 -125143201 + MIR SINE MIR 93 139 -69 245 146 0 42 chr6 57274168 57274216 -125141026 + Alu SINE Alu 250 295 -7 22 0 0 0 chr6 57274567 57274589 -125140653 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr6 57275293 57275325 -125139917 + AT_rich Low_complexity Low_complexity 1 32 0 270 0 0 0 chr6 57275343 57275373 -125139869 + (CA)n Simple_repeat Simple_repeat 2 31 0 270 0 0 0 chr6 57275663 57275693 -125139549 + (TA)n Simple_repeat Simple_repeat 2 31 0 601 317 94 34 chr6 57275693 57276141 -125139101 - MLT1J LTR MaLR -7 504 30 381 252 167 40 chr6 57276183 57276405 -125138837 - LTR16A1 LTR ERVL 0 457 208 203 100 0 50 chr6 57276818 57276858 -125138384 + (TCC)n Simple_repeat Simple_repeat 2 39 0 25 0 0 0 chr6 57277274 57277299 -125137943 + AT_rich Low_complexity Low_complexity 1 25 0 913 224 21 5 chr6 57278012 57278204 -125137038 + MIR SINE MIR 2 196 -66 21 57 0 0 chr6 57278272 57278307 -125136935 + AT_rich Low_complexity Low_complexity 1 35 0 198 265 0 0 chr6 57278374 57278423 -125136819 + L2 LINE L2 3265 3313 0 346 293 95 36 chr6 57278692 57278914 -125136328 - Charlie8 DNA MER1_type -2182 235 1 327 318 113 10 chr6 57278979 57279174 -125136068 + L2 LINE L2 2590 2804 -510 1919 231 36 11 chr6 57279309 57279759 -125135483 + MLT1C LTR MaLR 6 466 -1 505 311 33 7 chr6 57280092 57280243 -125134999 + MIR3 SINE MIR 54 208 0 21 0 0 0 chr6 57280321 57280342 -125134900 + AT_rich Low_complexity Low_complexity 1 21 0 263 222 37 25 chr6 57280396 57280477 -125134765 + L2 LINE L2 3232 3313 0 21 0 0 0 chr6 57281323 57281344 -125133898 + AT_rich Low_complexity Low_complexity 1 21 0 501 345 50 23 chr6 57281519 57281820 -125133422 - LTR16C LTR ERVL -1 490 182 799 249 14 46 chr6 57282311 57282528 -125132714 + MER63A DNA MER1_type 1 210 0 497 314 99 40 chr6 57282568 57282791 -125132451 + MIR SINE MIR 5 240 -22 330 279 23 0 chr6 57283662 57283748 -125131494 + MIR SINE MIR 151 238 -24 392 55 18 0 chr6 57283773 57283828 -125131414 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 22 0 0 0 chr6 57284562 57284584 -125130658 + AT_rich Low_complexity Low_complexity 1 22 0 250 238 0 0 chr6 57284977 57285040 -125130202 + (TG)n Simple_repeat Simple_repeat 2 64 0 302 336 36 58 chr6 57285792 57285929 -125129313 + L2 LINE L2 3121 3254 -18 357 344 16 24 chr6 57286337 57286462 -125128780 - L2 LINE L2 0 3272 3149 212 234 26 13 chr6 57286587 57286664 -125128578 + T-rich Low_complexity Low_complexity 2 79 0 216 333 222 19 chr6 57286949 57287057 -125128185 + MIR3 SINE MIR 60 189 -19 2483 169 95 8 chr6 57287066 57287540 -125127702 - MLT2B2 LTR ERVL 0 515 1 214 301 97 19 chr6 57289025 57289128 -125126114 + L2 LINE L2 3157 3267 -5 818 294 68 14 chr6 57289278 57289574 -125125668 - MARNA DNA Mariner -19 567 256 351 0 0 0 chr6 57289789 57289828 -125125414 + (CA)n Simple_repeat Simple_repeat 2 40 0 280 288 100 18 chr6 57289907 57290072 -125125170 + MIR SINE MIR 38 207 -55 324 0 0 0 chr6 57290146 57290182 -125125060 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 180 296 89 82 chr6 57290186 57290321 -125124921 + L2 LINE L2 3137 3272 0 400 261 99 49 chr6 57290414 57290827 -125124415 + MLT1J LTR MaLR 1 476 -35 341 353 200 8 chr6 57291050 57291285 -125123957 + L2 LINE L2 913 1192 -2122 967 314 72 71 chr6 57291307 57291654 -125123588 + L2 LINE L2 1314 1659 -1655 2103 125 57 20 chr6 57291654 57292005 -125123237 + THE1B LTR MaLR 1 364 0 967 314 72 71 chr6 57292005 57292398 -125122844 + L2 LINE L2 1659 2058 -1256 755 128 0 0 chr6 57292398 57292515 -125122727 - L1PB1 LINE L1 -1 6150 6034 967 314 72 71 chr6 57292515 57292592 -125122650 + L2 LINE L2 2058 2133 -1181 420 265 10 0 chr6 57292626 57292724 -125122518 + L2 LINE L2 3215 3313 0 2124 102 0 18 chr6 57294591 57294926 -125120316 + AluSg SINE Alu 4 333 0 211 140 0 35 chr6 57296147 57296204 -125119038 + (TA)n Simple_repeat Simple_repeat 2 56 0 383 269 187 15 chr6 57296260 57296394 -125118848 - MER5A DNA MER1_type -6 183 27 354 277 44 7 chr6 57296433 57296570 -125118672 + L1ME3A LINE L1 5772 5913 -257 251 364 13 0 chr6 57297286 57297363 -125117879 + MLT1K LTR MaLR 127 204 -384 27 49 0 0 chr6 57297797 57297838 -125117404 + AT_rich Low_complexity Low_complexity 1 41 0 487 191 254 16 chr6 57298206 57298332 -125116910 - MER5B DNA MER1_type -16 162 7 1636 88 13 0 chr6 57298894 57299120 -125116122 + MER30 DNA MER1_type 1 229 -1 2154 147 35 48 chr6 57299719 57300154 -125115088 + MSTB1 LTR MaLR 4 432 0 327 25 0 0 chr6 57300247 57300287 -125114955 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 256 26 0 chr6 57302752 57302791 -125112451 + MIR SINE MIR 36 75 -133 7666 25 0 0 chr6 57302943 57304623 -125110619 + L1PA3 LINE L1 4477 6155 0 648 183 0 0 chr6 57304649 57304791 -125110451 + CT-rich Low_complexity Low_complexity 3 144 0 588 255 0 50 chr6 57304801 57304962 -125110280 + MIR SINE MIR 90 242 -20 532 284 71 42 chr6 57306374 57306613 -125108629 - MIR SINE MIR -2 260 15 23 0 0 0 chr6 57306921 57306944 -125108298 + AT_rich Low_complexity Low_complexity 1 23 0 356 161 0 0 chr6 57306983 57307039 -125108203 - L1PB4 LINE L1 -41 6115 6060 * 1488 198 12 6 chr6 57307037 57307360 -125107882 + L1 LINE L1 4851 5175 -971 287 261 84 34 chr6 57307680 57307799 -125107443 - MLT1J LTR MaLR -362 149 25 506 307 68 6 chr6 57308041 57308217 -125107025 + MIR SINE MIR 20 206 -56 1422 136 45 0 chr6 57308358 57308578 -125106664 + MER30 DNA MER1_type 1 230 0 421 361 114 32 chr6 57308764 57309474 -125105768 + L2 LINE L2 1991 2758 -556 321 364 0 12 chr6 57310985 57311330 -125103912 + (CATA)n Simple_repeat Simple_repeat 1 340 0 351 151 0 118 chr6 57311629 57311748 -125103494 - Charlie5 DNA MER1_type -33 2579 2475 2050 146 0 0 chr6 57311992 57312300 -125102942 + AluSx SINE Alu 1 308 -4 185 343 10 78 chr6 57313224 57313326 -125101916 + L2 LINE L2 3150 3244 -28 543 54 33 0 chr6 57313375 57313467 -125101775 + (TA)n Simple_repeat Simple_repeat 1 95 0 30646 115 12 56 chr6 57313467 57317270 -125097972 - L1PA7 LINE L1 -22 6132 2164 180 0 0 0 chr6 57317270 57317290 -125097952 + (TTG)n Simple_repeat Simple_repeat 2 21 0 30646 115 12 56 chr6 57317290 57317516 -125097726 - L1PA7 LINE L1 -3990 2164 1930 212 0 36 0 chr6 57317516 57317544 -125097698 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 30646 115 12 56 chr6 57317544 57319929 -125095313 - L1PA7 LINE L1 -4224 1930 9 307 273 9 27 chr6 57320764 57320874 -125094368 - MIR SINE MIR -42 220 113 198 287 158 40 chr6 57320879 57320980 -125094262 - L2 LINE L2 -2 3270 3158 182 324 0 29 chr6 57321236 57321304 -125093938 - L2 LINE L2 -211 3061 2996 2136 126 0 3 chr6 57321304 57321605 -125093637 + AluSx SINE Alu 1 300 -12 224 313 0 0 chr6 57322560 57322643 -125092599 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 366 324 46 0 chr6 57322807 57322915 -125092327 - L2 LINE L2 0 3313 3201 222 203 94 62 chr6 57324293 57324357 -125090885 + MIR SINE MIR 87 152 -56 375 23 0 0 chr6 57324859 57324903 -125090339 + (TG)n Simple_repeat Simple_repeat 2 45 0 190 324 169 29 chr6 57326605 57326741 -125088501 - L2 LINE L2 -8 3264 3110 444 309 30 52 chr6 57326905 57327090 -125088152 + MIR SINE MIR 16 197 -65 1430 171 100 41 chr6 57327090 57327429 -125087813 + MLT1A1 LTR MaLR 5 363 -2 444 309 30 52 chr6 57327429 57327476 -125087766 + MIR SINE MIR 197 243 -19 243 61 0 0 chr6 57327488 57327521 -125087721 + (CAT)n Simple_repeat Simple_repeat 1 33 0 333 285 63 38 chr6 57327728 57327886 -125087356 + MER5A DNA MER1_type 9 170 -19 381 204 92 0 chr6 57328403 57328501 -125086741 - MSTB1 LTR MaLR -4 428 322 376 339 71 12 chr6 57328786 57328954 -125086288 + MIR3 SINE MIR 19 196 -12 563 281 66 75 chr6 57329096 57329213 -125086029 - MER57A LTR ERV1 -11 391 274 2072 121 13 26 chr6 57329213 57329520 -125085722 - AluSg SINE Alu -7 303 1 563 281 66 75 chr6 57329520 57329781 -125085461 - MER57A LTR ERV1 -128 274 9 342 340 28 35 chr6 57329862 57330006 -125085236 - MIR SINE MIR -86 176 34 533 259 0 0 chr6 57330399 57330511 -125084731 + MER81 DNA DNA 3 114 0 208 403 36 10 chr6 57331349 57331545 -125083697 + L3b LINE CR1 1317 1517 -66 257 346 69 53 chr6 57331783 57331971 -125083271 - MIR3 SINE MIR -13 195 5 383 228 44 66 chr6 57333487 57333623 -125081619 + MIR SINE MIR 74 206 -56 575 299 35 43 chr6 57334613 57334844 -125080398 - MIR SINE MIR -2 260 32 215 329 137 48 chr6 57334849 57334995 -125080247 - L2 LINE L2 -185 3087 2929 768 284 38 12 chr6 57335034 57335418 -125079824 - LTR33 LTR ERVL -37 484 15 312 342 9 18 chr6 57336248 57336359 -125078883 - MIR SINE MIR -62 146 37 286 89 18 18 chr6 57337254 57337310 -125077932 + (TA)n Simple_repeat Simple_repeat 2 57 0 213 197 0 0 chr6 57337364 57337425 -125077817 + (TG)n Simple_repeat Simple_repeat 1 61 0 193 269 31 92 chr6 57340336 57340466 -125074776 + MIR SINE MIR 63 184 -78 398 307 106 23 chr6 57341693 57342042 -125073200 + HAL1 LINE L1 1150 1527 -980 25 0 0 0 chr6 57342479 57342504 -125072738 + AT_rich Low_complexity Low_complexity 1 25 0 290 353 45 28 chr6 57343002 57343234 -125072008 + MIR3 SINE MIR 15 259 -3 183 80 0 0 chr6 57343979 57344004 -125071238 + (GAGTG)n Simple_repeat Simple_repeat 3 27 0 24 0 0 0 chr6 57344845 57344869 -125070373 + AT_rich Low_complexity Low_complexity 1 24 0 210 118 0 0 chr6 57346047 57346081 -125069161 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 892 235 77 14 chr6 57347456 57347677 -125067565 + MIR SINE MIR 1 235 -27 292 292 231 0 chr6 57347888 57348018 -125067224 - MIR SINE MIR -6 256 97 194 211 0 58 chr6 57348009 57348061 -125067181 + MIR SINE MIR 98 146 -62 * 325 271 85 8 chr6 57348440 57348558 -125066684 + MLT1I LTR MaLR 1 127 -282 461 186 44 26 chr6 57348572 57348685 -125066557 + MLT1I LTR MaLR 295 409 0 1449 65 16 10 chr6 57349239 57349548 -125065694 + (GAAA)n Simple_repeat Simple_repeat 2 312 0 212 175 0 25 chr6 57349548 57349588 -125065654 + GA-rich Low_complexity Low_complexity 3 41 0 588 309 88 53 chr6 57349588 57350074 -125065168 + L1MEd LINE L1 123 625 -5494 303 261 54 89 chr6 57350548 57350751 -125064491 + L1MEd LINE L1 819 1014 -5105 2375 99 0 0 chr6 57350752 57351055 -125064187 - AluSc SINE Alu -4 305 3 270 0 0 0 chr6 57351469 57351499 -125063743 + (TTG)n Simple_repeat Simple_repeat 1 30 0 725 257 18 0 chr6 57351982 57352153 -125063089 - MER5A DNA MER1_type -15 174 1 485 57 0 14 chr6 57352261 57352331 -125062911 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 304 330 0 19 chr6 57352705 57352808 -125062434 - MIR SINE MIR -142 120 20 412 259 44 44 chr6 57353721 57353856 -125061386 - MER5B DNA MER1_type 0 178 44 588 193 260 0 chr6 57354038 57354188 -125061054 + MER5A DNA MER1_type 1 189 0 238 329 14 0 chr6 57354218 57354291 -125060951 + MER5A DNA MER1_type 33 106 -83 851 274 91 27 chr6 57354406 57354785 -125060457 - MLT1J1 LTR MaLR 0 446 63 279 306 41 0 chr6 57355177 57355275 -125059967 - MIR SINE MIR -86 176 75 867 224 16 69 chr6 57355327 57355572 -125059670 + MLT1E LTR MaLR 1 232 -361 1064 219 29 0 chr6 57355597 57355807 -125059435 + MLT1E LTR MaLR 346 561 -32 198 0 0 0 chr6 57356920 57356942 -125058300 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 703 249 161 0 chr6 57357012 57357205 -125058037 + MER58A DNA MER1_type 1 224 0 364 359 42 5 chr6 57357331 57357523 -125057719 - MIR SINE MIR 0 262 64 23 33 0 0 chr6 57358149 57358179 -125057063 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr6 57359153 57359175 -125056067 + (T)n Simple_repeat Simple_repeat 1 22 0 30 27 0 0 chr6 57361552 57361589 -125053653 + AT_rich Low_complexity Low_complexity 1 37 0 1805 219 47 53 chr6 57361906 57362037 -125053205 - MLT1D LTR MaLR -1 504 374 2851 3 0 0 chr6 57362037 57362343 -125052899 + AluY SINE Alu 1 306 -5 1805 219 47 53 chr6 57362343 57362718 -125052524 - MLT1D LTR MaLR -131 374 1 898 272 93 61 chr6 57362814 57363288 -125051954 - LTR33 LTR ERVL -24 497 9 276 340 125 7 chr6 57363675 57363819 -125051423 - MIR SINE MIR -7 255 95 273 305 53 0 chr6 57363825 57363920 -125051322 - L2 LINE L2 0 3313 3214 254 318 12 0 chr6 57364458 57364543 -125050699 - MER117 DNA MER1_type -91 106 21 219 275 30 42 chr6 57365845 57366012 -125049230 + (CATA)n Simple_repeat Simple_repeat 2 166 0 * 275 251 29 58 chr6 57365942 57366113 -125049129 + (CATATA)n Simple_repeat Simple_repeat 6 171 0 253 247 33 44 chr6 57366059 57366241 -125049001 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 516 216 85 15 chr6 57366334 57366533 -125048709 - MER20B DNA MER1_type -45 738 526 776 265 41 9 chr6 57366766 57366985 -125048257 - MER20B DNA MER1_type -557 226 1 647 315 31 0 chr6 57367933 57368187 -125047055 - MIR SINE MIR 0 262 1 22 35 0 0 chr6 57368287 57368316 -125046926 + AT_rich Low_complexity Low_complexity 1 29 0 693 286 12 61 chr6 57369531 57369803 -125045439 + MIR SINE MIR 2 261 -1 716 327 0 0 chr6 57369945 57370153 -125045089 - MIR SINE MIR 0 262 55 2428 74 7 0 chr6 57370630 57370939 -125044303 - AluY SINE Alu 0 311 1 21 71 0 0 chr6 57371476 57371518 -125043724 + AT_rich Low_complexity Low_complexity 1 42 0 188 291 43 60 chr6 57371749 57371866 -125043376 + MIR SINE MIR 117 231 -31 369 304 50 31 chr6 57372044 57372205 -125043037 - MIR3 SINE MIR -28 180 17 272 289 0 13 chr6 57372664 57372740 -125042502 + L2 LINE L2 3237 3311 -2 212 339 29 50 chr6 57373652 57373831 -125041411 + MIR SINE MIR 28 204 -4 222 349 63 16 chr6 57376011 57376137 -125039105 - L2 LINE L2 0 3313 3182 617 330 111 19 chr6 57376600 57377139 -125038103 - L2 LINE L2 -2 3311 2709 782 269 110 69 chr6 57377310 57377775 -125037467 + MLT1G3 LTR MaLR 14 517 -50 28 71 0 0 chr6 57377821 57377877 -125037365 + AT_rich Low_complexity Low_complexity 1 56 0 314 256 68 36 chr6 57378225 57378444 -125036798 + L1ME4a LINE L1 5743 5968 -153 189 0 0 0 chr6 57381383 57381404 -125033838 + (T)n Simple_repeat Simple_repeat 1 21 0 2630 101 19 5 chr6 57383968 57384336 -125030906 + THE1C LTR MaLR 1 373 -2 214 255 255 21 chr6 57384524 57384618 -125030624 + MER5A DNA MER1_type 48 163 -26 * 217 303 46 28 chr6 57384545 57384654 -125030588 - MER5A DNA MER1_type -77 112 2 194 366 70 48 chr6 57385212 57385439 -125029803 + L2 LINE L2 2815 3046 -226 663 260 66 11 chr6 57385527 57385708 -125029534 - MIR SINE MIR -55 207 17 207 339 52 26 chr6 57385732 57385847 -125029395 + L2 LINE L2 3171 3288 -25 546 320 41 20 chr6 57386424 57386621 -125028621 + MIR SINE MIR 31 231 -31 288 250 31 31 chr6 57387051 57387147 -125028095 - MLT1J2 LTR MaLR -241 209 114 26 30 0 0 chr6 57387239 57387272 -125027970 + AT_rich Low_complexity Low_complexity 1 33 0 200 214 18 36 chr6 57387610 57387666 -125027576 - MIR SINE MIR -64 144 90 343 133 0 40 chr6 57387990 57388065 -125027177 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 209 56 0 28 chr6 57388438 57388474 -125026768 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 182 255 39 98 chr6 57388757 57388859 -125026383 - L2 LINE L2 0 3313 3218 185 316 158 9 chr6 57388920 57389034 -125026208 + L2 LINE L2 2250 2380 -934 4616 77 10 2 chr6 57389237 57389860 -125025382 - L1PB1 LINE L1 0 6151 5524 262 159 0 0 chr6 57389860 57389904 -125025338 + L1PB1 LINE L1 5483 5526 -625 306 311 44 7 chr6 57390179 57390314 -125024928 + MIR SINE MIR 49 188 -74 267 304 67 14 chr6 57390888 57391028 -125024214 + MIR SINE MIR 50 203 -59 211 298 149 25 chr6 57391237 57391358 -125023884 - MIR SINE MIR -14 248 113 201 323 10 42 chr6 57391352 57391448 -125023794 + MIR SINE MIR 9 101 -161 * 978 188 16 0 chr6 57391524 57391716 -125023526 + L1PB1 LINE L1 6 200 -6663 2753 128 27 16 chr6 57391716 57392160 -125023082 + L1PB1 LINE L1 634 1082 -5781 10067 173 31 59 chr6 57392162 57395811 -125019431 + L1PB1 LINE L1 3310 6851 -16 30 0 0 0 chr6 57395819 57395849 -125019393 + AT_rich Low_complexity Low_complexity 1 30 0 273 75 0 0 chr6 57395852 57395892 -125019350 + (ATG)n Simple_repeat Simple_repeat 1 40 0 204 184 0 0 chr6 57396505 57396543 -125018699 + L2 LINE L2 3270 3307 -6 710 172 34 28 chr6 57397194 57397430 -125017812 - L1ME2 LINE L1 -8 6154 5885 3683 99 13 8 chr6 57397472 57398006 -125017236 - L1PA11 LINE L1 0 6174 5638 3913 127 13 0 chr6 57398007 57398612 -125016630 + L1P LINE L1 3727 4339 -1807 273 349 83 15 chr6 57398663 57398795 -125016447 - MIR SINE MIR -67 141 1 233 394 58 0 chr6 57398845 57398949 -125016293 + MIR SINE MIR 45 154 -108 342 236 29 14 chr6 57400561 57400701 -125014541 + (TA)n Simple_repeat Simple_repeat 1 142 0 267 271 30 15 chr6 57400746 57400879 -125014363 + (TA)n Simple_repeat Simple_repeat 2 136 0 338 197 131 36 chr6 57401034 57401171 -125014071 + MIR SINE MIR 100 249 -13 199 88 0 59 chr6 57401147 57401181 -125014061 + L2 LINE L2 3271 3302 -11 * 449 269 83 117 chr6 57401839 57402455 -125012787 - L1ME4a LINE L1 -3 6118 5524 22 0 0 0 chr6 57403583 57403605 -125011637 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 57404772 57404802 -125010440 + AT_rich Low_complexity Low_complexity 1 30 0 459 231 119 19 chr6 57404876 57405036 -125010206 + MER5B DNA MER1_type 3 178 0 2135 132 0 0 chr6 57407201 57407511 -125007731 + AluSx SINE Alu 1 310 -2 299 329 35 0 chr6 57408546 57408631 -125006611 + L2 LINE L2 3185 3272 0 6854 151 18 45 chr6 57408741 57410023 -125005219 - L1P LINE L1 -4889 1257 11 234 185 74 0 chr6 57412300 57412354 -125002888 - MIR SINE MIR -74 188 131 1635 193 70 70 chr6 57412553 57413055 -125002187 + MLT1D LTR MaLR 3 504 -1 493 87 0 106 chr6 57414747 57414851 -125000391 - L1PA13 LINE L1 -4 6159 6067 203 156 0 0 chr6 57415749 57415781 -124999461 + GA-rich Low_complexity Low_complexity 1 32 0 346 311 59 22 chr6 57417712 57417847 -124997395 - MIR3 SINE MIR 0 208 69 642 178 0 0 chr6 57418541 57418648 -124996594 + MER58B DNA MER1_type 232 338 -3 232 91 0 73 chr6 57418662 57418717 -124996525 + (CTATA)n Simple_repeat Simple_repeat 5 55 0 365 109 16 0 chr6 57419923 57419987 -124995255 + (GA)n Simple_repeat Simple_repeat 2 66 0 319 338 33 52 chr6 57420729 57420939 -124994303 + MIR SINE MIR 7 212 -50 1086 197 152 10 chr6 57421621 57421910 -124993332 + MER2 DNA MER2_type 2 331 -14 331 316 26 18 chr6 57423200 57423314 -124991928 - MIR SINE MIR -90 172 58 23230 95 6 7 chr6 57424121 57424556 -124990686 + L1PA3 LINE L1 1907 2341 -3814 180 0 0 0 chr6 57424556 57424576 -124990666 + (CAA)n Simple_repeat Simple_repeat 2 21 0 23230 95 6 7 chr6 57424576 57428257 -124986985 + L1PA3 LINE L1 2341 6012 -143 14623 61 1 2 chr6 57428369 57430781 -124984461 + L1PA6 LINE L1 3462 5873 -281 229 313 62 45 chr6 57431314 57431426 -124983816 + L2 LINE L2 3154 3267 -5 225 0 0 0 chr6 57432066 57432091 -124983151 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 192 77 0 0 chr6 57433364 57433390 -124981852 + (T)n Simple_repeat Simple_repeat 1 26 0 796 291 137 28 chr6 57435423 57435781 -124979461 - L2 LINE L2 0 3313 2917 391 82 0 0 chr6 57435961 57436010 -124979232 - THE1A LTR MaLR 0 355 307 196 342 99 61 chr6 57436116 57436461 -124978781 - L2 LINE L2 -700 2614 2257 185 301 68 0 chr6 57436518 57436591 -124978651 + L2 LINE L2 3143 3220 -93 319 316 41 0 chr6 57436834 57436932 -124978310 + L2 LINE L2 3202 3303 -10 274 241 38 13 chr6 57438763 57438842 -124976400 + MIR SINE MIR 175 255 -7 2229 89 17 3 chr6 57439171 57439463 -124975779 - AluSc SINE Alu -12 297 2 970 248 75 48 chr6 57439564 57439964 -124975278 + MLT1J2 LTR MaLR 40 450 0 210 307 80 0 chr6 57440093 57440168 -124975074 + L2 LINE L2 3228 3308 -5 741 261 26 52 chr6 57440233 57440463 -124974779 + MIR SINE MIR 24 247 -15 1193 263 134 16 chr6 57441578 57442027 -124973215 - MLT1D LTR MaLR -3 502 1 1599 137 52 0 chr6 57442984 57443233 -124972009 - AluSx SINE Alu -50 262 1 268 255 189 28 chr6 57443763 57443869 -124971373 + MIR3 SINE MIR 69 191 -17 190 344 0 0 chr6 57445237 57445298 -124969944 - L2 LINE L2 -92 3221 3161 21 0 0 0 chr6 57496721 57496742 -124918500 + AT_rich Low_complexity Low_complexity 1 21 0 674 274 119 44 chr6 57497751 57498728 -124916514 + L1ME3A LINE L1 4382 5434 -736 349 264 63 17 chr6 57498864 57499038 -124916204 + L1ME3A LINE L1 5784 5965 -205 878 199 37 32 chr6 57499760 57499976 -124915266 - MER20 DNA MER1_type -2 217 1 22 0 0 0 chr6 57500565 57500587 -124914655 + AT_rich Low_complexity Low_complexity 1 22 0 2329 152 49 0 chr6 57502321 57502710 -124912532 - L1MA7 LINE L1 -390 5901 5494 1636 149 25 87 chr6 57502717 57503120 -124912122 + L1MA7 LINE L1 5914 6291 0 278 206 55 14 chr6 57503391 57503464 -124911778 + MLT1L LTR MaLR 8 83 -532 388 267 116 69 chr6 57503639 57503871 -124911371 + MLT1L LTR MaLR 370 612 -3 790 305 58 48 chr6 57504406 57504806 -124910436 + LTR16A LTR ERVL 18 421 -29 3547 302 41 20 chr6 57504843 57505434 -124909808 + HERV16 LTR ERVL 5 583 -4413 1013 206 23 23 chr6 57505434 57505653 -124909589 - MER20 DNA MER1_type 0 219 1 3547 302 41 20 chr6 57505653 57506341 -124908901 + HERV16 LTR ERVL 583 1310 -3686 1112 322 91 30 chr6 57506462 57507455 -124907787 + HERV16 LTR ERVL 2695 3754 -1900 314 368 8 8 chr6 57507486 57507603 -124907639 + L2 LINE L2 3156 3272 0 2123 117 3 0 chr6 57507639 57507930 -124907312 - AluSx SINE Alu 0 312 21 811 167 0 0 chr6 57508633 57508771 -124906471 + L1MC/D LINE L1 5617 5754 -590 391 218 45 6 chr6 57509264 57509420 -124905822 + (TA)n Simple_repeat Simple_repeat 1 162 0 21 0 0 0 chr6 57509827 57509848 -124905394 + AT_rich Low_complexity Low_complexity 1 21 0 240 341 111 31 chr6 57509871 57510107 -124905135 + MIR SINE MIR 1 253 -9 381 288 65 7 chr6 57510139 57510278 -124904964 - MIR SINE MIR -7 255 109 204 174 65 22 chr6 57511314 57511360 -124903882 - MIR SINE MIR -112 150 103 220 298 96 10 chr6 57511450 57511554 -124903688 - MIR SINE MIR -119 143 31 376 20 39 0 chr6 57511715 57511766 -124903476 - MADE1 DNA Mariner 0 80 28 292 0 51 0 chr6 57511822 57511861 -124903381 + MADE1 DNA Mariner 10 50 -30 329 174 224 20 chr6 57512838 57512936 -124902306 + L2 LINE L2 3186 3303 -10 260 330 123 17 chr6 57513028 57513207 -124902035 - L2 LINE L2 -1 3312 3115 2098 99 3 3 chr6 57515251 57515575 -124899667 + AluSp SINE Alu 1 324 0 226 184 0 53 chr6 57516387 57516463 -124898779 + L1ME LINE L1 5360 5431 -690 2301 94 3 28 chr6 57516705 57517025 -124898217 + AluSx SINE Alu 1 312 0 345 292 58 0 chr6 57517164 57517284 -124897958 - MLT1L LTR MaLR -347 268 142 347 141 16 0 chr6 57517514 57517578 -124897664 + GA-rich Low_complexity Low_complexity 4 68 0 432 0 0 0 chr6 57519339 57519387 -124895855 + (TA)n Simple_repeat Simple_repeat 2 49 0 205 320 48 58 chr6 57519555 57519658 -124895584 - MER5A DNA MER1_type -25 164 63 * 260 309 31 21 chr6 57519574 57519671 -124895571 + MER5A DNA MER1_type 55 152 -37 22 35 0 0 chr6 57520028 57520057 -124895185 + AT_rich Low_complexity Low_complexity 1 29 0 811 117 7 15 chr6 57520401 57520538 -124894704 - L1MA5 LINE L1 -5 6295 6160 1297 160 9 0 chr6 57521896 57522115 -124893127 + L1MC1 LINE L1 5967 6187 -146 269 70 0 68 chr6 57522115 57522166 -124893076 - MADE1 DNA Mariner -38 42 1 802 132 0 0 chr6 57522166 57522287 -124892955 + L1MC1 LINE L1 6194 6314 -19 353 293 74 70 chr6 57522615 57522966 -124892276 + MLT1J LTR MaLR 9 361 -150 5682 123 14 0 chr6 57523658 57524691 -124890551 - L1PA16 LINE L1 -9 6157 5107 363 346 8 23 chr6 57525514 57525647 -124889595 - L2 LINE L2 -2 3270 3140 267 349 189 25 chr6 57527651 57527926 -124887316 - L2 LINE L2 -2 3270 2951 186 376 0 11 chr6 57528050 57528143 -124887099 - L2 LINE L2 -565 2749 2658 675 292 47 47 chr6 57528255 57528642 -124886600 + HAL1 LINE L1 13 399 -2108 2238 290 70 57 chr6 57528706 57529119 -124886123 + HAL1 LINE L1 535 941 -1566 342 91 0 0 chr6 57529119 57529174 -124886068 + (TG)n Simple_repeat Simple_repeat 2 56 0 2238 290 70 57 chr6 57529174 57529274 -124885968 + HAL1 LINE L1 941 1038 -1469 2035 138 3 6 chr6 57529274 57529585 -124885657 - AluSx SINE Alu -2 310 1 2238 290 70 57 chr6 57529585 57530084 -124885158 + HAL1 LINE L1 1038 1572 -935 2215 118 0 0 chr6 57530084 57530381 -124884861 + AluSx SINE Alu 3 299 -13 2238 290 70 57 chr6 57530381 57530703 -124884539 + HAL1 LINE L1 1572 1888 -619 536 309 108 16 chr6 57531594 57531908 -124883334 + L2 LINE L2 1715 2057 -1257 243 341 167 34 chr6 57532103 57532815 -124882427 + L2 LINE L2 2051 2857 -457 214 292 28 14 chr6 57533630 57533702 -124881540 + L2 LINE L2 3191 3263 -9 248 180 0 20 chr6 57534591 57534641 -124880601 - MER5A DNA MER1_type -42 147 99 198 118 0 0 chr6 57534841 57534875 -124880367 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 185 321 57 19 chr6 57534886 57534939 -124880303 - L2 LINE L2 -25 3247 3193 185 128 0 26 chr6 57534984 57535023 -124880219 + (CA)n Simple_repeat Simple_repeat 1 38 0 525 271 42 0 chr6 57535700 57535866 -124879376 - LTR50 LTR ERVL -99 696 524 391 224 28 16 chr6 57536515 57536704 -124878538 + (TA)n Simple_repeat Simple_repeat 1 191 0 288 198 45 10 chr6 57536731 57537027 -124878215 + (TA)n Simple_repeat Simple_repeat 1 306 0 242 304 49 20 chr6 57537157 57537259 -124877983 + MLT1K LTR MaLR 447 551 -37 256 200 0 17 chr6 57537359 57537419 -124877823 + FLAM SINE Alu 71 129 -4 191 35 0 35 chr6 57537419 57537448 -124877794 + (TG)n Simple_repeat Simple_repeat 1 28 0 461 288 18 0 chr6 57537485 57537596 -124877646 + MER81 DNA DNA 1 113 -1 25 0 0 0 chr6 57538867 57538892 -124876350 + AT_rich Low_complexity Low_complexity 1 25 0 1963 256 37 11 chr6 57538892 57539435 -124875807 - L1ME1 LINE L1 -31 6135 5579 1946 132 139 24 chr6 57539435 57539815 -124875427 - MSTA LTR MaLR 0 428 5 791 96 8 24 chr6 57539824 57539949 -124875293 - MSTA-int LTR MaLR 0 1580 1458 * 2610 126 8 2 chr6 57539948 57540346 -124874896 - MSTA-int LTR MaLR -1175 405 6 1575 163 107 42 chr6 57540351 57540688 -124874554 - MSTA LTR MaLR 0 428 70 1247 254 20 45 chr6 57540697 57541364 -124873878 - L1ME1 LINE L1 -615 5551 4901 22 0 0 0 chr6 57541368 57541390 -124873852 + AT_rich Low_complexity Low_complexity 1 22 0 4707 190 20 31 chr6 57541390 57541761 -124873481 - L1MA9 LINE L1 -38 6860 6487 279 0 0 0 chr6 57541761 57541792 -124873450 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4707 190 20 31 chr6 57541792 57542914 -124872328 - L1MA9 LINE L1 -411 6487 5374 213 132 0 0 chr6 57542914 57542952 -124872290 + (TC)n Simple_repeat Simple_repeat 2 39 0 279 96 72 0 chr6 57542955 57543038 -124872204 + (TA)n Simple_repeat Simple_repeat 1 89 0 9674 237 38 33 chr6 57543038 57543525 -124871717 - L1MA9 LINE L1 -1329 5403 4920 1919 140 0 19 chr6 57543525 57543832 -124871410 - AluSx SINE Alu 0 312 12 9674 237 38 33 chr6 57543832 57544695 -124870547 - L1MA9 LINE L1 -1812 4920 4062 933 211 0 0 chr6 57544695 57544861 -124870381 - FRAM SINE Alu 0 166 1 9674 237 38 33 chr6 57544861 57548037 -124867205 - L1MA9 LINE L1 -2670 4062 1186 1708 286 68 48 chr6 57548127 57549000 -124866242 - L1MA9 LINE L1 -5207 1446 15 328 283 25 25 chr6 57549091 57549211 -124866031 - L1M3d LINE L1 -5763 128 9 2517 258 66 15 chr6 57549215 57550212 -124865030 - L1M4 LINE L1 -1243 4903 3856 2352 219 40 3 chr6 57550223 57550840 -124864402 + L1 LINE L1 4333 4972 -1174 2197 117 42 31 chr6 57550840 57551200 -124864042 - THE1B LTR MaLR 0 364 1 713 224 83 43 chr6 57551203 57551480 -124863762 + pTR5 LTR ERV1 741 1028 -1410 4379 122 105 22 chr6 57551559 57552322 -124862920 + LTR12 LTR ERV1 1 826 0 913 73 81 0 chr6 57552322 57552445 -124862797 + LTR12 LTR ERV1 582 714 0 5571 103 43 2 chr6 57552446 57553617 -124861625 + L1PB1 LINE L1 4970 6176 0 240 307 69 20 chr6 57553622 57553723 -124861519 - MIR SINE MIR -143 119 14 260 369 0 17 chr6 57554516 57554648 -124860594 + MIR SINE MIR 27 153 -76 484 296 186 17 chr6 57557182 57557527 -124857715 - L1ME4a LINE L1 0 6121 5719 192 346 98 53 chr6 57557806 57557939 -124857303 - L2 LINE L2 0 3272 3134 1659 199 117 30 chr6 57558492 57558955 -124856287 + MLT1D LTR MaLR 3 505 0 2198 98 27 0 chr6 57559304 57559600 -124855642 - AluSp SINE Alu -8 305 2 3990 133 46 4 chr6 57559701 57560420 -124854822 + L1MA5A LINE L1 5547 6295 -2 370 248 0 76 chr6 57561535 57561640 -124853602 - MER81 DNA DNA -11 103 7 23 0 0 0 chr6 57561848 57561871 -124853371 + AT_rich Low_complexity Low_complexity 1 23 0 2078 234 77 44 chr6 57562977 57563574 -124851668 - MLT1E2 LTR MaLR -7 619 1 1745 146 8 0 chr6 57564120 57564380 -124850862 + AluSc SINE Alu 32 293 -16 622 330 30 26 chr6 57564380 57564610 -124850632 - MER115 DNA AcHobo -454 239 9 325 352 30 26 chr6 57565403 57565670 -124849572 + HAL1b LINE L1 548 815 -533 22 56 0 0 chr6 57565773 57565809 -124849433 + AT_rich Low_complexity Low_complexity 1 36 0 1067 217 0 5 chr6 57565896 57566099 -124849143 - MLT1A2 LTR MaLR 0 374 173 180 111 0 0 chr6 57566269 57566296 -124848946 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 332 271 41 16 chr6 57566296 57566418 -124848824 - L2 LINE L2 -1605 1709 1585 1824 176 43 0 chr6 57566731 57567054 -124848188 - MER7A DNA MER2_type -4 342 8 30 45 0 0 chr6 57567675 57567719 -124847523 + AT_rich Low_complexity Low_complexity 1 44 0 895 138 13 0 chr6 57569051 57569210 -124846032 - L1MA8 LINE L1 -4 6287 6127 333 363 160 8 chr6 57569833 57570089 -124845153 - L2 LINE L2 -788 2526 2232 191 312 65 11 chr6 57573073 57573166 -124842076 + MIR SINE MIR 38 135 -73 21 36 0 0 chr6 57573189 57573217 -124842025 + AT_rich Low_complexity Low_complexity 1 28 0 300 53 0 0 chr6 57573773 57573811 -124841431 + (TA)n Simple_repeat Simple_repeat 1 38 0 429 330 117 33 chr6 57576169 57576566 -124838676 - L1M4 LINE L1 -1546 4600 4145 2150 133 0 9 chr6 57576566 57576881 -124838361 - AluSx SINE Alu 0 312 1 429 330 117 33 chr6 57576881 57577023 -124838219 - L1M4 LINE L1 -2001 4145 4016 835 188 67 18 chr6 57577049 57577214 -124838028 - FAM SINE Alu -2 173 1 542 335 36 28 chr6 57577660 57577908 -124837334 - MIR SINE MIR -11 251 2 191 311 14 14 chr6 57577911 57577985 -124837257 - L2 LINE L2 -545 2769 2696 201 94 0 0 chr6 57579107 57579139 -124836103 + (CA)n Simple_repeat Simple_repeat 1 32 0 644 198 154 6 chr6 57580325 57580507 -124834735 + MER33 DNA MER1_type 1 209 -115 566 259 48 6 chr6 57580604 57580770 -124834472 - L1MD2 LINE L1 0 6359 6187 513 275 68 34 chr6 57580865 57581072 -124834170 - L2 LINE L2 0 3313 3100 4820 120 8 1 chr6 57581083 57581810 -124833432 - L1PA16 LINE L1 -1 6165 5434 3093 152 37 17 chr6 57581811 57582556 -124832686 + L1MA10 LINE L1 4724 5481 -728 3755 173 100 18 chr6 57582616 57583652 -124831590 + Charlie1 DNA MER1_type 1556 2755 -6 216 0 0 0 chr6 57584859 57584883 -124830359 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2148 98 0 11 chr6 57584942 57585228 -124830014 - AluSq SINE Alu 0 313 31 371 277 50 0 chr6 57585278 57585379 -124829863 + MIR SINE MIR 157 262 0 212 241 0 19 chr6 57585826 57585880 -124829362 + L2 LINE L2 3261 3313 0 1324 244 39 68 chr6 57586408 57586891 -124828351 + L1ME1 LINE L1 5667 6135 -31 484 263 82 110 chr6 57586467 57587086 -124828156 + L1MA10 LINE L1 5733 6334 0 * 1600 187 0 35 chr6 57587930 57588246 -124826996 - AluJo SINE Alu -7 305 1 866 266 68 78 chr6 57588453 57588912 -124826330 - L2 LINE L2 0 3313 2860 213 81 14 68 chr6 57589293 57589300 -124825942 + (CAA)n Simple_repeat Simple_repeat 2 8 -63 1286 161 106 59 chr6 57589300 57589573 -124825669 + AluJb SINE Alu 1 286 -16 213 81 14 68 chr6 57589573 57589639 -124825603 + (CAA)n Simple_repeat Simple_repeat 8 71 0 479 200 18 9 chr6 57590455 57590565 -124824677 - LTR37B LTR ERV1 -28 440 330 746 216 85 85 chr6 57590631 57590644 -124824598 + LTR37B LTR ERV1 5 17 -451 2297 108 0 0 chr6 57590644 57590941 -124824301 + AluSg SINE Alu 1 297 -13 746 216 85 85 chr6 57590941 57591363 -124823879 + LTR37B LTR ERV1 16 440 -28 419 284 211 14 chr6 57592155 57592373 -124822869 - MIR SINE MIR 0 262 2 21 36 0 0 chr6 57592375 57592403 -124822839 + AT_rich Low_complexity Low_complexity 1 28 0 221 0 35 0 chr6 57592604 57592633 -124822609 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 200 285 66 88 chr6 57593861 57593998 -124821244 + L3b LINE CR1 1241 1374 -209 5412 53 22 7 chr6 57594370 57595096 -124820146 + L1PA7 LINE L1 5436 6171 0 2122 124 0 0 chr6 57595579 57595869 -124819373 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr6 57596405 57596428 -124818814 + AT_rich Low_complexity Low_complexity 1 23 0 1383 115 31 31 chr6 57596709 57596935 -124818307 - L1PA10 LINE L1 -4 6164 5939 225 0 0 0 chr6 57597705 57597730 -124817512 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2089 103 4 0 chr6 57597734 57598007 -124817235 - AluSc SINE Alu -35 274 1 2109 125 3 3 chr6 57598418 57598722 -124816520 - AluSx SINE Alu -8 304 1 839 304 122 39 chr6 57599626 57600142 -124815100 + L2 LINE L2 2352 2910 -404 489 237 187 7 chr6 57602644 57602783 -124812459 + MER63 DNA MER1_type 671 1688 0 192 184 0 0 chr6 57602783 57602821 -124812421 - MIR SINE MIR -56 206 169 653 251 74 11 chr6 57602933 57603108 -124812134 - MIR SINE MIR -6 256 71 234 0 0 0 chr6 57603469 57603495 -124811747 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 203 282 26 39 chr6 57605792 57605870 -124809372 - L2 LINE L2 -10 3303 3227 181 189 27 0 chr6 57606098 57606135 -124809107 + MIR SINE MIR 221 258 -4 398 258 0 25 chr6 57606682 57606802 -124808440 - LTR33A LTR ERVL 0 523 407 503 202 77 5 chr6 57608298 57608480 -124806762 - MLT1E1 LTR MaLR -2 652 363 5274 63 1 6 chr6 57608481 57609159 -124806083 + L1PA8 LINE L1 5428 6102 -70 1897 162 17 0 chr6 57609362 57609664 -124805578 - AluJb SINE Alu -5 307 1 25 0 0 0 chr6 57609817 57609842 -124805400 + AT_rich Low_complexity Low_complexity 1 25 0 189 194 28 0 chr6 57612774 57612810 -124802432 - L2 LINE L2 -15 3298 3262 35 83 0 0 chr6 57612832 57612916 -124802326 + AT_rich Low_complexity Low_complexity 1 84 0 3551 227 32 25 chr6 57612993 57613804 -124801438 - MER21B LTR ERV1 -2 861 45 292 197 13 0 chr6 57613939 57614015 -124801227 + (TA)n Simple_repeat Simple_repeat 2 78 0 458 247 11 26 chr6 57614763 57614953 -124800289 + L1 LINE L1 2901 3087 -3059 967 148 122 26 chr6 57614953 57615044 -124800198 + L1MA9 LINE L1 6062 6143 -169 192 77 0 0 chr6 57615044 57615070 -124800172 + (CA)n Simple_repeat Simple_repeat 1 26 0 967 148 122 26 chr6 57615070 57615207 -124800035 + L1MA9 LINE L1 6143 6312 0 461 257 133 24 chr6 57615264 57615603 -124799639 + L1 LINE L1 3112 3487 -2659 29 28 0 0 chr6 57615619 57615655 -124799587 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr6 57616086 57616111 -124799131 + AT_rich Low_complexity Low_complexity 1 25 0 194 358 0 0 chr6 57616151 57616218 -124799024 + MIR SINE MIR 66 132 -76 1215 248 74 22 chr6 57618817 57619261 -124795981 - MER69 DNA AcHobo -1 2525 2059 37577 33 24 1 chr6 57619263 57624679 -124790563 - L1PA3 LINE L1 -8 6147 606 266 243 0 0 chr6 57624681 57624751 -124790491 - MER69 DNA AcHobo -447 2079 2010 1269 306 125 2 chr6 57624834 57625249 -124789993 - MER69 DNA AcHobo -751 475 10 386 332 128 15 chr6 57625328 57625671 -124789571 - L2 LINE L2 -2179 1135 754 1864 188 18 51 chr6 57625768 57626240 -124789002 + MER89 LTR ERV1 1 556 -3 238 393 84 0 chr6 57626499 57626606 -124788636 - L2 LINE L2 -2908 406 291 259 154 31 0 chr6 57627103 57627168 -124788074 + CT-rich Low_complexity Low_complexity 1 67 0 27 29 0 0 chr6 57627674 57627708 -124787534 + AT_rich Low_complexity Low_complexity 1 34 0 225 108 0 0 chr6 57628935 57628972 -124786270 + (A)n Simple_repeat Simple_repeat 1 37 0 505 346 15 0 chr6 57630832 57631034 -124784208 + MIR SINE MIR 3 207 -55 180 0 0 0 chr6 57631529 57631549 -124783693 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 837 264 40 22 chr6 57632611 57632838 -124782404 + MIR SINE MIR 5 235 -27 22 0 0 0 chr6 57633259 57633281 -124781961 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 57633420 57633443 -124781799 + AT_rich Low_complexity Low_complexity 1 23 0 369 271 49 31 chr6 57634372 57634420 -124780822 + MLT1I LTR MaLR 130 176 -233 1192 213 9 0 chr6 57634420 57634641 -124780601 + MER58A DNA MER1_type 2 224 0 369 271 49 31 chr6 57634641 57634788 -124780454 + MLT1I LTR MaLR 176 358 -51 259 336 8 64 chr6 57636474 57636599 -124778643 - L2 LINE L2 -2 3270 3153 309 292 44 51 chr6 57636751 57636888 -124778354 - MIR SINE MIR -7 255 120 490 274 73 39 chr6 57636916 57637095 -124778147 + MLT1J2 LTR MaLR 266 450 0 22 35 0 0 chr6 57638202 57638231 -124777011 + AT_rich Low_complexity Low_complexity 1 29 0 1070 264 99 43 chr6 57639019 57639482 -124775760 + L2 LINE L2 2824 3312 -1 185 304 87 0 chr6 57640147 57640239 -124775003 - MIR SINE MIR -114 148 49 243 318 19 28 chr6 57640285 57640392 -124774850 - MIR SINE MIR -71 191 86 234 304 34 108 chr6 57640992 57641085 -124774157 + MIR3 SINE MIR 46 126 -82 12554 153 12 1 chr6 57641085 57642700 -124772542 + L1PA13 LINE L1 3037 4655 -1508 2294 110 0 0 chr6 57642700 57643008 -124772234 + AluSg SINE Alu 1 308 -2 12554 153 12 1 chr6 57643008 57644516 -124770726 + L1PA13 LINE L1 4655 6144 -19 234 304 34 108 chr6 57644516 57644570 -124770672 + MIR3 SINE MIR 126 182 -26 261 0 0 0 chr6 57644970 57644999 -124770243 + (CA)n Simple_repeat Simple_repeat 1 29 0 383 327 94 15 chr6 57646136 57646338 -124768904 - MIR SINE MIR -8 254 37 792 266 104 0 chr6 57646480 57646702 -124768540 - MIR SINE MIR -17 245 1 27 29 0 0 chr6 57647068 57647102 -124768140 + AT_rich Low_complexity Low_complexity 1 34 0 1844 141 0 37 chr6 57647106 57647403 -124767839 - AluSx SINE Alu -26 286 1 439 125 0 34 chr6 57648119 57648207 -124767035 + (GAA)n Simple_repeat Simple_repeat 3 87 0 1872 132 33 0 chr6 57649615 57649917 -124765325 + AluSx SINE Alu 1 311 0 980 199 44 19 chr6 57650175 57650381 -124764861 - MER20 DNA MER1_type -2 217 7 2004 244 46 19 chr6 57651831 57652400 -124762842 - L1ME1 LINE L1 -51 6115 5532 324 0 0 0 chr6 57652629 57652665 -124762577 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr6 57652884 57652913 -124762329 + AT_rich Low_complexity Low_complexity 1 29 0 672 168 62 25 chr6 57654508 57654669 -124760573 - MER58 DNA MER1_type 0 2420 2254 807 107 38 0 chr6 57654736 57654867 -124760375 + L1PB1 LINE L1 5660 5795 -356 183 56 111 0 chr6 57654867 57654921 -124760321 + (TA)n Simple_repeat Simple_repeat 2 61 0 2477 117 8 0 chr6 57654921 57655288 -124759954 + L1PB1 LINE L1 5775 6144 -7 22 35 0 0 chr6 57655326 57655355 -124759887 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 57655492 57655516 -124759726 + AT_rich Low_complexity Low_complexity 1 24 0 243 341 167 34 chr6 57656988 57657700 -124757542 - L2 LINE L2 -457 2857 2051 595 291 112 16 chr6 57657895 57658208 -124757034 - L2 LINE L2 -1257 2057 1715 23 0 0 0 chr6 57658504 57658527 -124756715 + AT_rich Low_complexity Low_complexity 1 23 0 259 274 0 0 chr6 57659222 57659284 -124755958 + GA-rich Low_complexity Low_complexity 3 64 0 220 284 232 0 chr6 57660011 57660106 -124755136 - MER91A DNA MER1_type -1 195 79 1578 352 135 17 chr6 57660127 57661493 -124753749 + L2 LINE L2 1546 3068 -204 461 272 22 0 chr6 57661494 57661630 -124753612 + MER58C DNA MER1_type 7 145 -70 348 175 16 0 chr6 57661691 57661754 -124753488 + MER58C DNA MER1_type 152 215 0 357 371 86 11 chr6 57661800 57661975 -124753267 + L2 LINE L2 3080 3267 -5 2134 105 0 3 chr6 57662634 57662930 -124752312 + AluSx SINE Alu 1 295 -17 22 56 0 0 chr6 57663098 57663134 -124752108 + AT_rich Low_complexity Low_complexity 1 36 0 412 275 180 9 chr6 57663414 57663625 -124751617 - MIR SINE MIR -10 252 6 404 311 8 0 chr6 57663961 57664093 -124751149 + LTR16C LTR ERVL 349 481 -10 315 325 118 28 chr6 57665378 57665590 -124749652 + MIR SINE MIR 5 235 -27 276 279 0 0 chr6 57665713 57665781 -124749461 + MIR SINE MIR 192 259 -3 22 70 0 0 chr6 57665791 57665834 -124749408 + AT_rich Low_complexity Low_complexity 1 43 0 188 188 203 0 chr6 57665873 57665942 -124749300 - L3b LINE CR1 -136 1447 1365 2218 113 0 0 chr6 57666797 57667089 -124748153 + AluSg SINE Alu 1 292 -18 854 203 27 11 chr6 57667245 57667432 -124747810 - MER3 DNA MER1_type -1 208 19 401 202 20 20 chr6 57667919 57668018 -124747224 - MIR SINE MIR -108 154 56 21 0 0 0 chr6 57668751 57668772 -124746470 + AT_rich Low_complexity Low_complexity 1 21 0 239 337 79 68 chr6 57669316 57669506 -124745736 + MLT1K LTR MaLR 126 317 -271 1680 174 22 48 chr6 57669803 57669849 -124745393 + MER7A DNA MER2_type 1 47 -2991 2075 130 0 0 chr6 57669849 57670134 -124745108 + AluSq SINE Alu 13 297 -16 1680 174 22 48 chr6 57670134 57670444 -124744798 + MER7A DNA MER2_type 47 346 0 848 123 0 0 chr6 57671921 57672035 -124743207 - AluJb SINE Alu -17 295 182 994 180 42 0 chr6 57672077 57672266 -124742976 - MER20 DNA MER1_type 0 219 23 254 281 53 35 chr6 57672509 57672623 -124742619 + L2 LINE L2 3152 3267 -5 424 321 106 91 chr6 57672788 57673443 -124741799 + L2 LINE L2 2484 3175 -138 396 59 0 0 chr6 57673443 57673494 -124741748 + (TG)n Simple_repeat Simple_repeat 2 52 0 424 321 106 91 chr6 57673494 57673636 -124741606 + L2 LINE L2 3175 3313 0 739 97 97 0 chr6 57673833 57673947 -124741295 - MER85 DNA T2_type -14 125 1 206 217 43 22 chr6 57674001 57674093 -124741149 + (TTA)n Simple_repeat Simple_repeat 3 96 0 337 374 101 5 chr6 57675108 57675327 -124739915 + MIR SINE MIR 20 259 -3 2747 188 87 53 chr6 57676516 57677251 -124737991 + LTR48 LTR ERV1 2 761 -26 263 27 0 27 chr6 57677275 57677312 -124737930 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 916 234 32 36 chr6 57677337 57677585 -124737657 + MLT1D LTR MaLR 1 247 -258 233 247 0 56 chr6 57678184 57678273 -124736969 + GA-rich Low_complexity Low_complexity 1 84 0 1093 247 139 6 chr6 57679532 57679848 -124735394 + MLT1E2 LTR MaLR 13 370 -256 294 133 10 174 chr6 57679864 57679962 -124735280 + LTR38B LTR ERV1 10 91 -519 2257 238 76 29 chr6 57679964 57680665 -124734577 - MER50 LTR ERV1 0 734 1 267 162 99 117 chr6 57681146 57681257 -124733985 + LTR38 LTR ERV1 448 556 0 1205 243 4 0 chr6 57681258 57681517 -124733725 + MLT1E2 LTR MaLR 367 626 0 242 272 49 0 chr6 57682379 57682460 -124732782 - L1MC/D LINE L1 -2278 5530 5446 438 313 90 0 chr6 57682530 57682696 -124732546 - MIR SINE MIR -74 188 8 482 289 109 32 chr6 57682717 57683029 -124732213 - L1MC/D LINE L1 -756 5390 5055 1012 147 0 37 chr6 57683650 57683813 -124731429 - AluJb SINE Alu -35 277 121 218 213 0 0 chr6 57683926 57683973 -124731269 + A-rich Low_complexity Low_complexity 1 47 0 207 122 102 41 chr6 57684373 57684422 -124730820 + L3 LINE CR1 802 853 -724 429 232 0 0 chr6 57684478 57684573 -124730669 + MER3 DNA MER1_type 74 168 -41 814 237 175 9 chr6 57684588 57684913 -124730329 + MER3 DNA MER1_type 2246 2624 0 4418 184 40 24 chr6 57684997 57685965 -124729277 + L1MB3 LINE L1 5145 6133 -50 2243 89 14 0 chr6 57685965 57686257 -124728985 + AluY SINE Alu 1 296 -15 4418 184 40 24 chr6 57686257 57686306 -124728936 + L1MB3 LINE L1 6133 6180 -3 416 267 113 92 chr6 57686324 57686616 -124728626 + L3 LINE CR1 1152 1449 -128 541 201 50 50 chr6 57686828 57686987 -124728255 + MER103 DNA DNA 3 161 -5 254 340 181 21 chr6 57687145 57687289 -124727953 - L2 LINE L2 -1 3271 3105 899 193 18 6 chr6 57687524 57687695 -124727547 - MER2 DNA MER2_type -172 173 1 742 299 42 4 chr6 57687914 57688155 -124727087 + MIR SINE MIR 13 262 0 468 302 112 26 chr6 57688319 57688350 -124726892 + MIR SINE MIR 3 30 -232 1937 162 0 25 chr6 57688350 57688665 -124726577 + AluJo SINE Alu 1 307 -5 468 302 112 26 chr6 57688665 57688865 -124726377 + MIR SINE MIR 30 254 -8 303 49 0 0 chr6 57690413 57690454 -124724788 + (TG)n Simple_repeat Simple_repeat 2 42 0 645 231 199 0 chr6 57690613 57690829 -124724413 - MER5C DNA MER1_type -34 290 32 1059 238 3 59 chr6 57690997 57691337 -124723905 + L1MA9 LINE L1 5951 6271 -41 292 309 67 33 chr6 57691353 57691605 -124723637 + L2 LINE L2 2768 3044 -228 214 258 0 32 chr6 57691707 57691800 -124723442 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 355 213 35 0 chr6 57691802 57691943 -124723299 + (TA)n Simple_repeat Simple_repeat 1 146 0 1831 158 3 0 chr6 57691947 57692231 -124723011 - AluSx SINE Alu -25 287 3 362 301 49 28 chr6 57692273 57692416 -124722826 + L2 LINE L2 3167 3312 -1 1090 252 22 4 chr6 57694253 57694527 -124720715 + LTR16C LTR ERVL 213 491 0 184 205 26 0 chr6 57694943 57694982 -124720260 - MIR SINE MIR -6 256 217 1379 304 168 28 chr6 57695384 57696438 -124718804 - L2 LINE L2 -67 3246 2035 22 56 0 0 chr6 57697583 57697619 -124717623 + AT_rich Low_complexity Low_complexity 1 36 0 304 351 123 7 chr6 57697642 57697796 -124717446 - L2 LINE L2 0 3272 3101 21 0 0 0 chr6 57697841 57697862 -124717380 + AT_rich Low_complexity Low_complexity 1 21 0 1213 189 47 128 chr6 57697922 57698262 -124716980 + MLT1A2 LTR MaLR 1 304 -70 904 166 18 12 chr6 57698262 57698425 -124716817 + FRAM SINE Alu 2 165 -1 1213 189 47 128 chr6 57698425 57698491 -124716751 + MLT1A2 LTR MaLR 304 374 0 605 251 24 18 chr6 57699118 57699285 -124715957 - MLT1H LTR MaLR -361 188 21 238 326 113 21 chr6 57699970 57700111 -124715131 + MIR SINE MIR 43 196 -66 757 147 0 0 chr6 57700125 57700241 -124715001 + FLAM_C SINE Alu 1 116 -27 32 26 0 0 chr6 57700241 57700280 -124714962 + AT_rich Low_complexity Low_complexity 1 39 0 660 212 7 27 chr6 57702261 57702407 -124712835 - MIR SINE MIR -21 241 99 694 178 89 20 chr6 57703172 57703318 -124711924 - MER21B LTR ERV1 -381 482 327 1985 155 0 0 chr6 57703489 57703779 -124711463 - AluSx SINE Alu -22 290 1 1063 193 80 12 chr6 57704055 57704304 -124710938 + L1MD3 LINE L1 7730 7995 0 270 264 168 8 chr6 57704366 57704491 -124710751 - L2 LINE L2 -5 3308 3164 856 162 115 31 chr6 57704917 57705108 -124710134 - MER20 DNA MER1_type 0 219 13 191 378 27 9 chr6 57707131 57707242 -124708000 + MIR SINE MIR 28 140 -68 207 161 0 0 chr6 57707254 57707285 -124707957 + (TG)n Simple_repeat Simple_repeat 2 32 0 342 160 57 0 chr6 57708116 57708200 -124707042 + MIR SINE MIR 52 140 -68 213 372 12 0 chr6 57708496 57708582 -124706660 - L2 LINE L2 0 3272 3186 426 259 196 14 chr6 57709215 57709435 -124705807 + L1ME4a LINE L1 5785 6044 -77 2044 141 37 3 chr6 57709541 57709867 -124705375 - MER1B DNA MER1_type 0 337 1 422 158 142 31 chr6 57709977 57710104 -124705138 + L1MC3 LINE L1 6020 6160 -1625 1434 191 9 41 chr6 57710422 57710717 -124704525 + AluJo SINE Alu 1 287 -25 351 0 0 0 chr6 57710717 57710756 -124704486 + (GA)n Simple_repeat Simple_repeat 2 40 0 1434 191 9 41 chr6 57710756 57710779 -124704463 + AluJo SINE Alu 287 309 -3 492 346 66 4 chr6 57712377 57712605 -124702637 - MIR SINE MIR -1 261 20 4278 161 25 26 chr6 57713594 57714441 -124700801 + L1MA8 LINE L1 5446 6291 0 986 265 51 71 chr6 57714563 57714956 -124700286 + L2 LINE L2 2367 2751 -563 21 0 0 0 chr6 57715351 57715372 -124699870 + AT_rich Low_complexity Low_complexity 1 21 0 633 214 75 6 chr6 57715505 57715664 -124699578 + L1MD3 LINE L1 7802 7971 -24 699 261 47 14 chr6 57715810 57716021 -124699221 + MIR SINE MIR 21 238 -24 372 346 207 12 chr6 57716236 57716652 -124698590 + L2 LINE L2 2289 2785 -529 1821 19 0 0 chr6 57716652 57716867 -124698375 - L1PA2 LINE L1 0 6155 5941 4500 15 0 0 chr6 57716878 57717398 -124697844 + L1P1 LINE L1 5254 5773 -382 658 290 200 32 chr6 57717543 57718567 -124696675 + L2 LINE L2 2053 3313 0 258 298 32 73 chr6 57718565 57718689 -124696553 + L2 LINE L2 2942 3060 -212 * 403 303 87 10 chr6 57719148 57719356 -124695886 - L1MC/D LINE L1 -2331 5477 5254 336 23 0 0 chr6 57719404 57719447 -124695795 - L1PA3 LINE L1 -3 6152 6110 456 36 0 0 chr6 57719447 57719503 -124695739 + L1PA4 LINE L1 6008 6063 -92 425 338 98 42 chr6 57719503 57720042 -124695200 - L1MC/D LINE L1 -918 5228 4631 7110 36 6 0 chr6 57720042 57720937 -124694305 - L1PA4 LINE L1 -3 6152 5236 425 338 98 42 chr6 57720937 57721175 -124694067 - L1MC/D LINE L1 -1515 4631 4408 23 0 0 0 chr6 57722700 57722723 -124692519 + AT_rich Low_complexity Low_complexity 1 23 0 277 304 0 0 chr6 57723271 57723386 -124691856 + T-rich Low_complexity Low_complexity 1 115 0 1608 180 54 15 chr6 57723499 57723851 -124691391 + MLT2C1 LTR ERVL 2 480 -40 237 65 0 0 chr6 57723902 57723933 -124691309 + (CA)n Simple_repeat Simple_repeat 2 32 0 1961 138 17 0 chr6 57724042 57724332 -124690910 + AluSx SINE Alu 1 295 -17 311 310 17 69 chr6 57724486 57724660 -124690582 - HAL1b LINE L1 -811 537 373 21 89 0 0 chr6 57726209 57726265 -124688977 + AT_rich Low_complexity Low_complexity 1 56 0 390 149 35 23 chr6 57726283 57726370 -124688872 - Charlie7 DNA MER1_type -2513 99 12 26 30 0 0 chr6 57727750 57727783 -124687459 + AT_rich Low_complexity Low_complexity 1 33 0 390 335 98 15 chr6 57728228 57728431 -124686811 + MIR SINE MIR 30 249 -13 22 35 0 0 chr6 57728474 57728503 -124686739 + AT_rich Low_complexity Low_complexity 1 29 0 386 287 90 80 chr6 57728815 57728980 -124686262 + MLT1I LTR MaLR 15 177 -232 180 111 0 0 chr6 57728980 57729007 -124686235 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 386 287 90 80 chr6 57729007 57729217 -124686025 + MLT1I LTR MaLR 177 394 -15 512 322 16 0 chr6 57729227 57729410 -124685832 - MIR SINE MIR -29 233 48 306 0 0 0 chr6 57730382 57730416 -124684826 + (A)n Simple_repeat Simple_repeat 1 34 0 437 291 110 0 chr6 57731066 57731193 -124684049 - MIR SINE MIR -73 189 49 277 370 70 0 chr6 57731618 57731718 -124683524 + L2 LINE L2 2978 3084 -188 234 293 47 38 chr6 57731734 57731840 -124683402 + L1MC/D LINE L1 5609 5715 -2093 244 321 114 7 chr6 57731983 57732123 -124683119 + L2 LINE L2 2933 3087 -185 468 321 78 17 chr6 57732316 57732737 -124682505 + L1ME4a LINE L1 2384 2830 -3316 402 252 60 32 chr6 57732777 57732808 -124682434 + L1ME4a LINE L1 5173 5202 -962 2144 123 0 7 chr6 57732808 57733117 -124682125 + AluSc SINE Alu 1 307 -2 402 252 60 32 chr6 57733117 57733375 -124681867 + L1ME4a LINE L1 5202 5467 -697 525 261 61 22 chr6 57734218 57734397 -124680845 + MIR SINE MIR 76 260 -2 37 52 0 0 chr6 57734727 57734785 -124680457 + AT_rich Low_complexity Low_complexity 1 58 0 78 12 0 0 chr6 57736047 57736132 -124679110 + AT_rich Low_complexity Low_complexity 1 85 0 314 80 0 20 chr6 57736942 57736992 -124678250 - MADE1 DNA Mariner -1 79 31 298 322 11 11 chr6 57737046 57737133 -124678109 + MIR SINE MIR 59 145 -63 623 310 72 70 chr6 57737419 57737848 -124677394 + L2 LINE L2 2864 3293 -20 182 353 121 26 chr6 57738266 57738646 -124676596 + L2 LINE L2 1924 2339 -975 623 304 26 31 chr6 57738669 57738896 -124676346 - MIR SINE MIR -5 257 32 440 367 85 14 chr6 57738875 57739240 -124676002 + L2 LINE L2 2414 2804 -510 * 309 288 0 0 chr6 57739478 57739551 -124675691 + L2 LINE L2 3200 3272 0 2195 111 7 0 chr6 57739781 57740079 -124675163 + AluSq SINE Alu 1 300 -13 308 319 122 56 chr6 57740585 57740996 -124674246 + L3 LINE CR1 575 1012 -565 730 290 109 64 chr6 57741019 57741516 -124673726 + LTR33 LTR ERVL 1 519 -2 656 261 138 14 chr6 57741516 57741734 -124673508 - MIR SINE MIR -10 252 8 780 261 75 55 chr6 57741842 57742337 -124672905 + L1ME4a LINE L1 5511 6015 -106 592 322 88 24 chr6 57742524 57742819 -124672423 + L3 LINE CR1 1261 1574 -3 676 228 68 76 chr6 57744422 57744659 -124670583 + MIR SINE MIR 4 238 -24 804 249 92 14 chr6 57745206 57745423 -124669819 + MLT1J2 LTR MaLR 1 234 -216 190 43 0 0 chr6 57745423 57745446 -124669796 + MER5A DNA MER1_type 1 23 -166 4962 95 0 13 chr6 57746050 57746755 -124668487 - L1PA11 LINE L1 -3 6171 5476 1144 74 117 0 chr6 57746755 57746917 -124668325 - AluY SINE Alu -16 295 115 20262 164 18 12 chr6 57746917 57749520 -124665722 - L1PA11 LINE L1 -690 5471 2887 1793 155 20 14 chr6 57749520 57749816 -124665426 - AluSx SINE Alu -14 298 1 20262 164 18 12 chr6 57749816 57750799 -124664443 - L1PA11 LINE L1 -3274 2887 1862 2113 148 3 0 chr6 57750799 57751109 -124664133 + AluSx SINE Alu 1 311 -1 20262 164 18 12 chr6 57751109 57751447 -124663795 - L1PA11 LINE L1 -4299 1862 1528 192 369 12 36 chr6 57751769 57751853 -124663389 + L2 LINE L2 3208 3289 -24 216 204 23 0 chr6 57751858 57751902 -124663340 + (CA)n Simple_repeat Simple_repeat 2 46 0 180 111 0 0 chr6 57752019 57752046 -124663196 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 252 0 0 0 chr6 57754357 57754385 -124660857 + (GA)n Simple_repeat Simple_repeat 1 28 0 236 337 109 10 chr6 57756309 57756410 -124658832 - L2 LINE L2 0 3313 3203 2225 95 0 3 chr6 57756416 57756700 -124658542 - AluSq SINE Alu -20 293 11 193 311 81 0 chr6 57757090 57757164 -124658078 + MIR SINE MIR 183 262 0 292 358 166 35 chr6 57757164 57757477 -124657765 - L2 LINE L2 -5 3267 2914 4852 128 5 1 chr6 57757503 57758244 -124656998 + L1PA16 LINE L1 5414 6157 -9 257 340 107 30 chr6 57758265 57758527 -124656715 - L2 LINE L2 -410 2904 2623 2038 33 0 4 chr6 57758528 57758772 -124656470 - L1P2 LINE L1 -338 5817 5575 1193 43 0 25 chr6 57758773 57758936 -124656306 + L1PA4 LINE L1 5994 6152 -3 276 337 108 51 chr6 57758936 57759369 -124655873 - L2 LINE L2 -687 2627 2170 192 91 0 0 chr6 57759836 57759848 -124655394 + (TA)n Simple_repeat Simple_repeat 1 12 -21 2148 105 3 35 chr6 57759848 57760162 -124655080 + AluSx SINE Alu 1 304 -8 192 91 0 0 chr6 57760162 57760182 -124655060 + (TA)n Simple_repeat Simple_repeat 11 33 0 345 47 0 0 chr6 57760182 57760225 -124655017 + (TG)n Simple_repeat Simple_repeat 2 44 0 1379 167 103 10 chr6 57760478 57760790 -124654452 + L1MB8 LINE L1 5837 6177 -1 23 54 0 0 chr6 57761127 57761164 -124654078 + AT_rich Low_complexity Low_complexity 1 37 0 445 288 171 37 chr6 57761965 57762877 -124652365 - L1M4 LINE L1 -1198 4948 3915 307 311 88 27 chr6 57763599 57763859 -124651383 - L1M4 LINE L1 -2286 3860 3585 323 320 35 30 chr6 57763995 57764176 -124651066 + L1MC4a LINE L1 5687 5824 -297 452 283 174 28 chr6 57764249 57764461 -124650781 + MIR SINE MIR 7 249 -13 25 75 0 0 chr6 57764461 57764514 -124650728 + AT_rich Low_complexity Low_complexity 1 53 0 21 57 0 0 chr6 57764617 57764652 -124650590 + AT_rich Low_complexity Low_complexity 1 35 0 251 269 20 16 chr6 57764771 57764867 -124650375 + MIR SINE MIR 16 113 -95 5225 145 23 15 chr6 57765044 57765926 -124649316 + MER4D LTR ERV1 15 903 0 264 368 110 25 chr6 57767881 57768207 -124647035 - L2 LINE L2 -1 3271 2918 2540 155 8 2 chr6 57769211 57769610 -124645632 + MER57A LTR ERV1 1 401 -2 227 241 116 36 chr6 57771150 57771262 -124643980 + MIR SINE MIR 26 146 -116 1011 254 140 42 chr6 57771271 57771606 -124643636 + MLT1J LTR MaLR 1 368 -143 26 30 0 0 chr6 57771667 57771700 -124643542 + AT_rich Low_complexity Low_complexity 1 33 0 367 292 80 58 chr6 57772292 57772429 -124642813 + L2 LINE L2 3133 3272 0 529 281 44 91 chr6 57772747 57773138 -124642104 - MLT1G3 LTR MaLR -182 413 14 929 212 85 0 chr6 57773151 57773387 -124641855 + Charlie4a DNA MER1_type 253 508 0 592 219 0 9 chr6 57773998 57774112 -124641130 - MER81 DNA DNA 0 114 2 1938 82 109 0 chr6 57774409 57774689 -124640553 - AluSx SINE Alu 0 308 1 23 33 0 0 chr6 57776888 57776918 -124638324 + AT_rich Low_complexity Low_complexity 1 30 0 189 175 0 0 chr6 57777855 57777895 -124637347 + (CATA)n Simple_repeat Simple_repeat 3 42 0 922 284 50 86 chr6 57777928 57778453 -124636789 + MLT1G1 LTR MaLR 77 582 -13 253 282 118 10 chr6 57780103 57780212 -124635030 - MIR SINE MIR -61 147 31 240 381 71 34 chr6 57780273 57780541 -124634701 + L2 LINE L2 2990 3267 -5 21 57 0 0 chr6 57780752 57780787 -124634455 + AT_rich Low_complexity Low_complexity 1 35 0 691 272 45 40 chr6 57780916 57781140 -124634102 + MIR SINE MIR 20 244 -18 1017 249 42 4 chr6 57782528 57782769 -124632473 + MIR SINE MIR 12 261 -1 412 291 133 15 chr6 57783949 57784361 -124630881 - L1ME4a LINE L1 -46 6075 5615 241 337 68 83 chr6 57784938 57785190 -124630052 - L2 LINE L2 -218 3054 2807 280 317 21 21 chr6 57785289 57785431 -124629811 - L2 LINE L2 -998 2316 2175 446 358 59 3 chr6 57786199 57786487 -124628755 - L2 LINE L2 -1206 2108 1805 367 294 102 28 chr6 57787584 57787761 -124627481 + MIR3 SINE MIR 16 205 -3 221 335 124 19 chr6 57788097 57788258 -124626984 + L2 LINE L2 3118 3295 -18 2170 118 3 10 chr6 57790126 57790440 -124624802 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 57790871 57790892 -124624350 + AT_rich Low_complexity Low_complexity 1 21 0 806 327 28 0 chr6 57791413 57791667 -124623575 + MIR SINE MIR 1 261 -1 320 245 20 0 chr6 57793707 57793809 -124621433 - MER113 DNA MER1_type? -415 106 3 261 374 55 36 chr6 57793904 57794072 -124621170 + MIR SINE MIR 6 179 -29 305 140 18 0 chr6 57794072 57794129 -124621113 + CT-rich Low_complexity Low_complexity 4 61 0 191 306 42 14 chr6 57796559 57796631 -124618611 + L2 LINE L2 2693 2766 -548 24 0 0 0 chr6 57798270 57798294 -124616948 + AT_rich Low_complexity Low_complexity 1 24 0 217 299 26 26 chr6 57798328 57798445 -124616797 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 1762 197 0 3 chr6 57799651 57799961 -124615281 - AluJb SINE Alu -2 310 2 463 139 0 0 chr6 57799962 57800041 -124615201 - FLAM_A SINE Alu -2 140 62 583 297 87 13 chr6 57800127 57800356 -124614886 - MIR SINE MIR -2 260 15 413 348 19 0 chr6 57800873 57801028 -124614214 - MIR3 SINE MIR 0 208 51 482 248 32 19 chr6 57801136 57801293 -124613949 - MIR SINE MIR -73 189 31 25282 128 11 17 chr6 57801620 57806816 -124608426 - L1PA8A LINE L1 -1 6445 1239 219 88 0 0 chr6 57806816 57806850 -124608392 + (TTG)n Simple_repeat Simple_repeat 3 36 0 25282 128 11 17 chr6 57806850 57808070 -124607172 - L1PA8A LINE L1 -5207 1239 13 597 95 9 38 chr6 57809022 57809127 -124606115 - AluSp/q SINE Alu 0 313 212 322 287 52 0 chr6 57809481 57809596 -124605646 + L2 LINE L2 3192 3312 -1 328 347 21 7 chr6 57810189 57810333 -124604909 + MIR SINE MIR 68 213 -49 318 307 151 47 chr6 57810780 57810992 -124604250 - L3 LINE CR1 -15 1562 1329 230 240 0 0 chr6 57811416 57811466 -124603776 + L2 LINE L2 3263 3312 -1 2434 74 0 0 chr6 57811946 57812245 -124602997 + AluY SINE Alu 1 299 -12 2389 100 0 3 chr6 57813503 57813814 -124601428 - AluSq SINE Alu -3 310 1 286 291 52 60 chr6 57814638 57814772 -124600470 + L3 LINE CR1 1398 1530 -47 746 270 29 0 chr6 57814802 57815006 -124600236 - MER63A DNA MER1_type 0 210 1 388 325 24 0 chr6 57815766 57815892 -124599350 - MIR SINE MIR -85 177 49 23 0 0 0 chr6 57816549 57816572 -124598670 + AT_rich Low_complexity Low_complexity 1 23 0 362 335 88 44 chr6 57817055 57817351 -124597891 - L2 LINE L2 -659 2655 2347 886 135 67 10 chr6 57817355 57817563 -124597679 - MER33 DNA MER1_type -44 280 61 212 175 29 155 chr6 57818610 57818713 -124596529 - MIR3 SINE MIR -5 203 114 * 459 231 0 10 chr6 57818686 57818790 -124596452 - MER5A DNA MER1_type -83 106 4 249 268 42 0 chr6 57818790 57818853 -124596389 - MIR3 SINE MIR -32 176 111 292 308 65 9 chr6 57818962 57819069 -124596173 + MER81 DNA DNA 1 113 -1 29 47 0 0 chr6 57820222 57820265 -124594977 + AT_rich Low_complexity Low_complexity 1 43 0 224 273 64 82 chr6 57820961 57821071 -124594171 - L2 LINE L2 -20 3252 3145 1148 193 14 9 chr6 57821071 57821289 -124593953 + MER20 DNA MER1_type 1 219 0 22 56 0 0 chr6 57821686 57821722 -124593520 + AT_rich Low_complexity Low_complexity 1 36 0 247 218 0 0 chr6 57821729 57821784 -124593458 - Charlie7 DNA MER1_type -2507 105 51 366 388 66 36 chr6 57821817 57822255 -124592987 + L2 LINE L2 2804 3254 -18 353 342 82 33 chr6 57822849 57823033 -124592209 - L2 LINE L2 -1 3271 3079 3316 221 31 21 chr6 57823425 57824398 -124590844 + L1ME1 LINE L1 5191 6334 0 1648 260 103 51 chr6 57824464 57825103 -124590139 + HAL1 LINE L1 797 1508 -999 2111 131 0 0 chr6 57825103 57825401 -124589841 - AluSx SINE Alu -5 307 10 1648 260 103 51 chr6 57825401 57825758 -124589484 + HAL1 LINE L1 1508 1845 -662 500 248 136 20 chr6 57825744 57825942 -124589300 + L1ME3A LINE L1 5511 5731 -439 * 437 251 6 50 chr6 57825952 57826131 -124589111 + L1ME3A LINE L1 5878 6048 -122 22 35 0 0 chr6 57826131 57826160 -124589082 + AT_rich Low_complexity Low_complexity 1 29 0 395 242 8 31 chr6 57826176 57826304 -124588938 + L1ME3A LINE L1 6037 6161 -9 319 345 24 15 chr6 57826630 57826836 -124588406 - L2 LINE L2 -1064 2250 2043 240 269 54 23 chr6 57826950 57827080 -124588162 + MER94 DNA DNA 1 134 0 1087 80 0 0 chr6 57827348 57827485 -124587757 + AluY SINE Alu 1 137 -174 40855 30 21 1 chr6 57827485 57833479 -124581763 + L1HS LINE L1 35 6153 -2 207 0 0 0 chr6 57833481 57833504 -124581738 + (A)n Simple_repeat Simple_repeat 1 23 0 1543 44 0 0 chr6 57833504 57833685 -124581557 + AluY SINE Alu 119 299 -12 252 86 0 0 chr6 57833767 57833802 -124581440 + (T)n Simple_repeat Simple_repeat 1 35 0 344 275 65 0 chr6 57834002 57834140 -124581102 - L1MA9 LINE L1 -109 6203 6057 288 331 84 18 chr6 57834335 57834501 -124580741 + MIR3 SINE MIR 31 207 -1 1042 220 229 3 chr6 57836463 57836786 -124578456 + MSTD LTR MaLR 1 396 0 21 0 0 0 chr6 57836843 57836864 -124578378 + AT_rich Low_complexity Low_complexity 1 21 0 1191 220 6 28 chr6 57836868 57837186 -124578056 - L1M4 LINE L1 -1143 5003 4693 361 374 18 18 chr6 57838145 57838311 -124576931 + MIR3 SINE MIR 43 208 0 213 39 0 0 chr6 57838532 57838558 -124576684 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2873 185 3 44 chr6 57839062 57839715 -124575527 + L1MA10 LINE L1 5709 6334 0 2368 161 21 26 chr6 57840121 57840549 -124574693 + MSTA LTR MaLR 1 426 -2 274 243 87 10 chr6 57841151 57841254 -124573988 + Charlie8 DNA MER1_type 30 140 -2277 333 225 12 0 chr6 57841329 57841409 -124573833 + Charlie8 DNA MER1_type 1346 1426 -991 581 181 285 0 chr6 57842133 57842277 -124572965 + MER53 DNA DNA 1 185 -4 534 248 54 20 chr6 57842809 57842958 -124572284 - MIR SINE MIR -70 192 39 210 37 0 0 chr6 57843963 57843990 -124571252 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2394 80 3 0 chr6 57843992 57844280 -124570962 - AluSp SINE Alu -24 289 1 333 0 0 0 chr6 57844414 57844451 -124570791 + (CA)n Simple_repeat Simple_repeat 2 38 0 891 218 60 56 chr6 57845057 57845273 -124569969 + MER20 DNA MER1_type 3 219 0 182 176 176 94 chr6 57845956 57846041 -124569201 + L2 LINE L2 3173 3264 -8 649 222 42 37 chr6 57847460 57847649 -124567593 + L1MD3 LINE L1 7798 7987 -8 201 175 0 0 chr6 57847719 57847759 -124567483 + (CA)n Simple_repeat Simple_repeat 2 41 0 573 232 0 0 chr6 57847873 57847972 -124567270 + AluJ/FLAM SINE Alu 1 99 -213 43194 38 23 2 chr6 57848358 57854385 -124560857 + L1PA3 LINE L1 4 6155 0 327 194 69 0 chr6 57854928 57855000 -124560242 + L1MD3 LINE L1 7911 7987 -8 1487 104 52 56 chr6 57856006 57856237 -124559005 - MER30 DNA MER1_type 0 230 1 252 0 0 0 chr6 57856534 57856562 -124558680 + (TA)n Simple_repeat Simple_repeat 2 29 0 269 370 84 28 chr6 57858178 57858500 -124556742 - L2 LINE L2 -353 2961 2622 282 355 14 51 chr6 57859698 57859836 -124555406 - L2 LINE L2 -6 3266 3134 194 237 0 92 chr6 57860195 57860271 -124554971 + L3 LINE CR1 1264 1332 -245 499 58 29 0 chr6 57860290 57860359 -124554883 + L1PA10 LINE L1 6093 6163 -5 258 265 0 29 chr6 57861582 57861650 -124553592 - MIR SINE MIR -161 101 36 391 316 75 23 chr6 57861675 57861849 -124553393 + MER5A DNA MER1_type 4 186 -3 310 267 123 70 chr6 57863550 57863850 -124551392 + L2 LINE L2 2156 2471 -843 360 367 40 20 chr6 57865516 57865764 -124549478 + MIR SINE MIR 3 255 -7 21 36 0 0 chr6 57866664 57866692 -124548550 + AT_rich Low_complexity Low_complexity 1 28 0 274 344 107 8 chr6 57868110 57868232 -124547010 + L2 LINE L2 3179 3312 -1 316 136 15 15 chr6 57869864 57869930 -124545312 + GA-rich Low_complexity Low_complexity 1 66 0 351 318 79 61 chr6 57870100 57870380 -124544862 - L2 LINE L2 -52 3220 2936 19397 59 6 1 chr6 57870900 57873974 -124541268 - L1PA7 LINE L1 -1 6153 3002 12081 117 13 17 chr6 57873989 57875774 -124539468 - L1PA7 LINE L1 -4357 1789 11 330 193 36 48 chr6 57875783 57875866 -124539376 - MLT1D LTR MaLR -418 87 6 1063 228 13 31 chr6 57875963 57876187 -124539055 - MER58A DNA MER1_type -1 223 4 205 186 0 0 chr6 57876211 57876254 -124538988 + A-rich Low_complexity Low_complexity 1 43 0 338 246 8 63 chr6 57876631 57876757 -124538485 + MIR SINE MIR 98 216 -46 842 341 49 22 chr6 57877031 57877477 -124537765 - L2 LINE L2 -420 2894 2437 678 300 47 9 chr6 57877569 57877802 -124537440 - MIR SINE MIR -1 261 20 1191 219 88 65 chr6 57878062 57878140 -124537102 + MLT2B1 LTR ERVL 1 76 -478 357 24 0 0 chr6 57878140 57878182 -124537060 + (TG)n Simple_repeat Simple_repeat 2 43 0 1191 219 88 65 chr6 57878182 57878474 -124536768 + MLT2B1 LTR ERVL 76 431 -123 354 171 0 0 chr6 57878474 57878544 -124536698 + CT-rich Low_complexity Low_complexity 1 70 0 465 259 37 82 chr6 57878604 57878847 -124536395 - L2 LINE L2 0 3313 3082 906 237 26 56 chr6 57878904 57879170 -124536072 + MLT1K LTR MaLR 330 587 -1 255 309 52 57 chr6 57881463 57881673 -124533569 + MLT1K LTR MaLR 378 586 -2 222 259 0 0 chr6 57883074 57883128 -124532114 + (TG)n Simple_repeat Simple_repeat 1 54 0 339 156 5 94 chr6 57884513 57884705 -124530537 + GA-rich Low_complexity Low_complexity 6 180 0 201 269 58 0 chr6 57885467 57885519 -124529723 + L2 LINE L2 3204 3258 -14 914 283 41 24 chr6 57886206 57886570 -124528672 - MLT1I LTR MaLR 0 409 64 233 289 33 11 chr6 57887455 57887545 -124527697 + MLT1K LTR MaLR 1 92 -496 283 235 73 44 chr6 57887785 57887921 -124527321 + LTR67 LTR ERVL 418 557 0 32 43 0 0 chr6 57888000 57888046 -124527196 + AT_rich Low_complexity Low_complexity 1 46 0 844 261 72 112 chr6 57888204 57888880 -124526362 + L2 LINE L2 2658 3313 0 5454 135 41 11 chr6 57889282 57890154 -124525088 + MER4D LTR ERV1 1 898 -5 286 333 16 8 chr6 57890410 57890539 -124524703 + MIR SINE MIR 121 250 -12 1462 176 62 62 chr6 57890591 57890942 -124524300 + LTR8A LTR ERV1 1 351 -376 3047 85 25 22 chr6 57890942 57891389 -124523853 + LTR7 LTR ERV1 1 448 -2 14596 94 8 36 chr6 57891392 57893938 -124521304 + HERVH LTR ERV1 1 2613 -5100 2975 9 0 0 chr6 57893938 57894256 -124520986 - AluYb8 SINE Alu 0 318 1 14596 94 8 36 chr6 57894256 57894629 -124520613 + HERVH LTR ERV1 2613 2995 -4718 5656 110 13 3 chr6 57894608 57895454 -124519788 + HERVH LTR ERV1 3140 3993 -3720 * 3173 122 0 4 chr6 57895456 57896072 -124519170 + HERVH LTR ERV1 4488 5149 -2564 1466 112 0 0 chr6 57896103 57896308 -124518934 + HERVH LTR ERV1 5615 5819 -1894 2360 104 50 13 chr6 57896308 57896684 -124518558 + HERVH LTR ERV1 7324 7713 0 3243 74 29 20 chr6 57896684 57897128 -124518114 + LTR7 LTR ERV1 1 448 -2 1592 188 43 74 chr6 57897128 57897522 -124517720 + LTR8A LTR ERV1 346 727 0 209 319 62 9 chr6 57897974 57898087 -124517155 + MIR3 SINE MIR 14 132 -76 202 313 148 8 chr6 57898356 57898484 -124516758 - MIR SINE MIR -6 256 111 669 290 74 7 chr6 57899712 57899981 -124515261 + L2 LINE L2 1766 2052 -1262 1967 265 80 45 chr6 57900284 57901190 -124514052 + L2 LINE L2 2040 2976 -338 598 292 31 5 chr6 57901172 57901367 -124513875 + L2 LINE L2 3108 3307 -6 * 281 257 9 105 chr6 57901956 57902061 -124513181 + L3b LINE CR1 1394 1488 -95 180 0 0 0 chr6 57902922 57902942 -124512300 + (TA)n Simple_repeat Simple_repeat 2 21 0 850 222 94 0 chr6 57903205 57903376 -124511866 - MER5A DNA MER1_type -1 188 2 367 328 45 23 chr6 57904512 57904689 -124510553 - L2 LINE L2 -470 2844 2664 276 342 43 8 chr6 57905102 57905219 -124510023 - L2 LINE L2 -2 3270 3150 24 0 0 0 chr6 57905279 57905303 -124509939 + AT_rich Low_complexity Low_complexity 1 24 0 438 193 0 232 chr6 57906835 57907115 -124508127 - MIR SINE MIR 0 262 48 400 144 13 183 chr6 57907306 57907459 -124507783 - L1MA9 LINE L1 -38 6274 6148 23 0 0 0 chr6 57907724 57907747 -124507495 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 57907890 57907915 -124507327 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 57907982 57908004 -124507238 + AT_rich Low_complexity Low_complexity 1 22 0 314 280 10 20 chr6 57908906 57909006 -124506236 + (TATATG)n Simple_repeat Simple_repeat 3 101 0 234 0 0 0 chr6 57909007 57909033 -124506209 + (TG)n Simple_repeat Simple_repeat 2 27 0 1159 271 199 14 chr6 57909161 57909691 -124505551 - L2 LINE L2 -7 3306 2695 709 306 45 64 chr6 57909731 57910199 -124505043 - MLT1J LTR MaLR -34 477 19 681 266 78 5 chr6 57910201 57910419 -124504823 - L2 LINE L2 -684 2630 2397 318 26 0 0 chr6 57911516 57911555 -124503687 + (CA)n Simple_repeat Simple_repeat 2 40 0 273 306 32 40 chr6 57911950 57912084 -124503158 - MIR SINE MIR -63 145 36 390 132 0 0 chr6 57912746 57912822 -124502420 + (TTGG)n Simple_repeat Simple_repeat 2 77 0 25 0 0 0 chr6 57912886 57912911 -124502331 + AT_rich Low_complexity Low_complexity 1 25 0 201 246 105 0 chr6 57914509 57914566 -124500676 - MIR3 SINE MIR -15 193 131 182 388 15 15 chr6 57914588 57914722 -124500520 + MER5B DNA MER1_type 42 175 -3 225 281 10 62 chr6 57915240 57915336 -124499906 - MIR SINE MIR -88 174 84 652 296 153 12 chr6 57915369 57915710 -124499532 + L2 LINE L2 2919 3307 -6 474 279 128 10 chr6 57917145 57917349 -124497893 + L2 LINE L2 3086 3313 0 205 362 29 9 chr6 57917746 57917851 -124497391 - L3 LINE CR1 -601 976 870 394 258 55 39 chr6 57918164 57918292 -124496950 - L3 LINE CR1 -1167 410 281 1984 119 26 25 chr6 57918779 57919124 -124496118 - MER4A LTR ERV1 0 664 261 632 120 0 20 chr6 57919124 57919224 -124496018 - MER4A LTR ERV1 -566 98 1 383 249 315 10 chr6 57919383 57919580 -124495662 - L2 LINE L2 -9 3304 3048 414 0 0 0 chr6 57919587 57919633 -124495609 + (GATTG)n Simple_repeat Simple_repeat 5 50 0 677 194 294 0 chr6 57919883 57920053 -124495189 + MER58A DNA MER1_type 3 222 -2 336 48 0 0 chr6 57920340 57920382 -124494860 + (TG)n Simple_repeat Simple_repeat 1 42 0 239 240 0 0 chr6 57920383 57920433 -124494809 + (CA)n Simple_repeat Simple_repeat 1 50 0 1989 202 121 70 chr6 57921575 57922105 -124493137 + MLT1E1 LTR MaLR 7 563 -91 5309 156 33 43 chr6 57922112 57923867 -124491375 - L1PB4 LINE L1 0 6156 4403 577 168 20 0 chr6 57923877 57923978 -124491264 + MLT1E1 LTR MaLR 520 622 -2 1725 161 3 11 chr6 57924377 57924735 -124490507 - AluJb SINE Alu 0 356 1 208 211 0 0 chr6 57925311 57925349 -124489893 - L2 LINE L2 -16 3256 3219 204 40 0 0 chr6 57926904 57926929 -124488313 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2503 71 3 7 chr6 57927257 57927565 -124487677 + L1PB1 LINE L1 5844 6150 -1 1051 159 34 0 chr6 57927578 57927754 -124487488 + MLT1B LTR MaLR 164 345 -45 38 22 0 0 chr6 57927761 57927806 -124487436 + AT_rich Low_complexity Low_complexity 1 45 0 4336 165 44 56 chr6 57927906 57928373 -124486869 + L1MB3 LINE L1 5048 5519 -664 1661 160 10 42 chr6 57928373 57928685 -124486557 + 7SLRNA srpRNA srpRNA 19 320 0 4336 165 44 56 chr6 57928685 57929356 -124485886 + L1MB3 LINE L1 5519 6176 -7 2368 94 10 3 chr6 57929369 57929676 -124485566 + AluSc SINE Alu 1 309 0 434 223 116 0 chr6 57929818 57929930 -124485312 - MIR3 SINE MIR -24 184 60 202 310 112 74 chr6 57931419 57931812 -124483430 + L2 LINE L2 2092 2499 -815 402 276 95 0 chr6 57931998 57932114 -124483128 + L2 LINE L2 3187 3313 0 195 100 0 0 chr6 57932245 57932275 -124482967 + (TC)n Simple_repeat Simple_repeat 1 30 0 227 373 55 9 chr6 57932716 57932826 -124482416 + L2 LINE L2 3139 3253 -19 341 247 186 0 chr6 57933207 57933304 -124481938 - L2 LINE L2 -4 3268 3154 1422 182 39 31 chr6 57934028 57934956 -124480286 - SVA Other Other -728 722 432 454 129 0 0 chr6 57935229 57935291 -124479951 - L1PA12 LINE L1 -6019 1562 1501 * 1379 162 0 0 chr6 57935289 57935511 -124479731 - L1PA12 LINE L1 -7350 231 10 3005 173 45 10 chr6 57935511 57936089 -124479153 + L1PA16 LINE L1 5562 6159 -7 2415 205 4 0 chr6 57936488 57936980 -124478262 - L1 LINE L1 -1625 4521 4028 21 36 0 0 chr6 57937200 57937228 -124478014 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr6 57937371 57937418 -124477824 + AT_rich Low_complexity Low_complexity 1 47 0 637 167 0 28 chr6 57937772 57937880 -124477362 + AluSg/x SINE Alu 191 295 -15 2880 233 51 6 chr6 57937880 57938658 -124476584 + L1M4 LINE L1 4492 5304 -842 967 171 11 11 chr6 57940598 57940774 -124474468 + FAM SINE Alu 1 48 -1 7587 186 18 10 chr6 57941917 57943458 -124471784 + L1P LINE L1 2646 4198 -1948 4649 83 62 59 chr6 57943631 57944427 -124470815 + SVA Other Other 69 866 -520 7547 82 13 2 chr6 57944970 57946106 -124469136 - L1P LINE L1 -3160 2986 1838 1841 158 17 0 chr6 57947151 57947443 -124467799 - AluJb SINE Alu -15 297 1 198 290 0 70 chr6 57947718 57947818 -124467424 - MIR SINE MIR -51 211 119 194 337 114 59 chr6 57947973 57948228 -124467014 - L2 LINE L2 -5 3267 2999 23 0 0 0 chr6 57948809 57948832 -124466410 + AT_rich Low_complexity Low_complexity 1 23 0 2233 100 0 0 chr6 57951055 57951344 -124463898 + AluSx SINE Alu 1 289 -23 362 127 0 0 chr6 57951410 57951473 -124463769 - L1MA4 LINE L1 -1 6299 6237 548 329 36 24 chr6 57952931 57953180 -124462062 - MIR SINE MIR 0 262 11 501 312 126 9 chr6 57953439 57953654 -124461588 + MIR SINE MIR 12 251 -11 388 252 63 8 chr6 57953777 57953904 -124461338 + L1ME2 LINE L1 6022 6155 -9 29 0 0 0 chr6 57953924 57953953 -124461289 + AT_rich Low_complexity Low_complexity 1 29 0 203 273 129 57 chr6 57954281 57954475 -124460767 - MIR SINE MIR -51 211 4 268 263 0 0 chr6 57955456 57955513 -124459729 + GA-rich Low_complexity Low_complexity 2 58 0 297 255 49 20 chr6 57955695 57955797 -124459445 + MIR SINE MIR 69 173 -89 1794 222 16 36 chr6 57955931 57956489 -124458753 - LTR55 LTR ERV -1 547 1 351 331 97 7 chr6 57956522 57956676 -124458566 - MIR SINE MIR -6 256 89 775 195 204 51 chr6 57956693 57957006 -124458236 + MER57A LTR ERV1 43 403 0 321 278 86 31 chr6 57958059 57958221 -124457021 + MIR SINE MIR 81 251 -11 372 226 118 0 chr6 57958953 57959046 -124456196 + HAL1 LINE L1 1588 1691 -816 35 0 0 0 chr6 57959067 57959102 -124456140 + AT_rich Low_complexity Low_complexity 1 35 0 257 240 125 29 chr6 57959141 57959245 -124455997 + HAL1 LINE L1 1815 1928 -579 2096 121 20 3 chr6 57959298 57959596 -124455646 + AluSp SINE Alu 1 303 -10 342 311 50 55 chr6 57959620 57959839 -124455403 + HAL1 LINE L1 2047 2264 -243 21 0 0 0 chr6 57959873 57959894 -124455348 + AT_rich Low_complexity Low_complexity 1 21 0 374 314 153 47 chr6 57959922 57960263 -124454979 + L1MC/D LINE L1 5436 5812 -1996 545 291 167 38 chr6 57962281 57962885 -124452357 + L1MC/D LINE L1 4524 5205 -941 1136 251 28 26 chr6 57962902 57963324 -124451918 + L1MC/D LINE L1 5256 5678 -2130 2106 168 10 90 chr6 57963366 57963554 -124451688 + MLT1C LTR MaLR 7 208 -259 2191 103 21 3 chr6 57963554 57963845 -124451397 + AluSg SINE Alu 1 296 -14 2106 168 10 90 chr6 57963845 57964157 -124451085 + MLT1C LTR MaLR 208 467 0 4246 181 26 7 chr6 57964157 57964704 -124450538 + L1MB7 LINE L1 4957 5492 -692 1903 166 137 8 chr6 57964704 57965083 -124450159 + MSTA LTR MaLR 1 428 0 4246 181 26 7 chr6 57965083 57965725 -124449517 + L1MB7 LINE L1 5492 6165 -19 1122 249 97 31 chr6 57965794 57966380 -124448862 + L2 LINE L2 2574 3198 -115 612 229 176 0 chr6 57966734 57966887 -124448355 - MER5A DNA MER1_type -6 183 4 192 77 0 0 chr6 57967033 57967059 -124448183 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 227 268 71 0 chr6 57967180 57967236 -124448006 - MER81 DNA DNA 0 114 55 387 211 26 0 chr6 57967240 57967316 -124447926 - MER81 DNA DNA -36 78 1 238 330 10 10 chr6 57971180 57971277 -124443965 + L3b LINE CR1 1260 1356 -227 189 107 0 0 chr6 57972135 57972163 -124443079 + (GGAA)n Simple_repeat Simple_repeat 2 29 0 466 286 108 30 chr6 57972973 57973204 -124442038 + MIR SINE MIR 8 256 -6 303 287 32 0 chr6 57973669 57973763 -124441479 + L1MC5 LINE L1 7813 7909 -52 771 311 21 0 chr6 57974160 57974395 -124440847 + MIR SINE MIR 13 252 -10 189 270 16 32 chr6 57976036 57976099 -124439143 - L3 LINE CR1 0 1577 1516 352 257 108 7 chr6 57976152 57976300 -124438942 + MER103 DNA DNA 3 165 -1 2464 65 0 3 chr6 57976302 57976611 -124438631 - AluY SINE Alu -3 308 1 1795 165 0 20 chr6 57976756 57977059 -124438183 - AluJo SINE Alu -15 297 1 227 374 34 20 chr6 57977649 57977796 -124437446 + L2 LINE L2 2900 3048 -224 2171 104 0 13 chr6 57978185 57978483 -124436759 - AluY SINE Alu -15 296 3 215 139 0 23 chr6 57980820 57980863 -124434379 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2479 75 0 7 chr6 57983601 57983907 -124431335 - AluY SINE Alu -7 304 1 490 283 217 5 chr6 57984158 57984356 -124430886 - MIR SINE MIR -21 241 2 242 299 30 0 chr6 57984840 57984907 -124430335 + GA-rich Low_complexity Low_complexity 3 71 0 22 0 0 0 chr6 57985374 57985396 -124429846 + AT_rich Low_complexity Low_complexity 1 22 0 186 259 114 60 chr6 57985612 57985778 -124429464 + L2 LINE L2 1741 1915 -1399 1155 259 70 65 chr6 57985919 57987237 -124428005 - L1MEc LINE L1 -1384 4831 302 231 346 147 13 chr6 57987578 57987809 -124427433 + L2 LINE L2 2844 3105 -167 240 339 40 0 chr6 57987899 57988023 -124427219 - MER103 DNA DNA 0 166 38 24 0 0 0 chr6 57988341 57988365 -124426877 + AT_rich Low_complexity Low_complexity 1 24 0 1076 130 26 0 chr6 57988365 57988519 -124426723 - AluSp SINE Alu -27 286 129 2062 139 0 7 chr6 57988522 57988857 -124426385 - AluSx SINE Alu 0 312 1 4729 80 2 0 chr6 57988876 57989511 -124425731 - L1PB1 LINE L1 -1 6150 5515 337 234 13 0 chr6 57989779 57989856 -124425386 - MER94 DNA DNA -52 82 5 301 270 79 48 chr6 57990400 57990526 -124424716 + MIR3 SINE MIR 75 204 -4 818 246 167 0 chr6 57990853 57991068 -124424174 - MIR SINE MIR 0 262 12 206 188 144 24 chr6 57991089 57991195 -124424047 - MIR SINE MIR -56 206 80 242 270 0 32 chr6 57991622 57991685 -124423557 + L2 LINE L2 3210 3270 -2 236 335 53 59 chr6 57991859 57992011 -124423231 + L3b LINE CR1 1416 1566 -17 222 351 18 18 chr6 57993588 57993702 -124421540 - MIR SINE MIR -73 135 22 290 318 217 23 chr6 57993887 57994233 -124421009 - L3 LINE CR1 -325 1252 840 530 357 26 22 chr6 57994248 57994475 -124420767 + MIR SINE MIR 21 248 -14 260 330 100 0 chr6 57994530 57994630 -124420612 - L3 LINE CR1 -737 840 731 509 275 98 21 chr6 57994975 57995168 -124420074 - L3 LINE CR1 -1182 395 188 346 258 32 16 chr6 57995744 57995868 -124419374 + (CATATA)n Simple_repeat Simple_repeat 6 131 0 199 298 0 18 chr6 57995906 57995963 -124419279 - MIR SINE MIR -132 76 21 317 236 76 10 chr6 57996140 57996240 -124419002 + MIR SINE MIR 2 111 -97 430 287 239 6 chr6 57996240 57996681 -124418561 + L2 LINE L2 2760 3313 0 1212 88 9 12 chr6 57996682 57997012 -124418230 + (TGGA)n Simple_repeat Simple_repeat 1 329 0 605 294 55 14 chr6 57997126 57997419 -124417823 - L1ME4a LINE L1 -47 6074 5770 422 295 83 28 chr6 57997427 57997681 -124417561 - L1ME4a LINE L1 -382 5739 5472 2493 79 0 0 chr6 57997728 57998031 -124417211 + AluY SINE Alu 1 303 -8 2213 141 0 0 chr6 57998539 57998851 -124416391 + AluSx SINE Alu 1 312 0 1402 279 89 26 chr6 58000187 58000699 -124414543 - L1ME3 LINE L1 -208 5954 5395 1740 146 29 7 chr6 58000699 58001000 -124414242 - AluSx SINE Alu 0 307 1 1402 279 89 26 chr6 58001000 58001186 -124414056 - L1ME3 LINE L1 -767 5395 5222 183 170 43 43 chr6 58001559 58001606 -124413636 + L2 LINE L2 3222 3268 -4 371 270 56 0 chr6 58001783 58001872 -124413370 + MIR SINE MIR 30 123 -85 464 194 107 29 chr6 58002688 58002791 -124412451 - MER5A DNA MER1_type -78 111 1 287 335 94 31 chr6 58002851 58003075 -124412167 + L3b LINE CR1 1338 1575 -8 200 318 80 0 chr6 58003700 58003788 -124411454 - L2 LINE L2 0 3313 3219 263 172 0 17 chr6 58003915 58003973 -124411269 + CT-rich Low_complexity Low_complexity 2 58 0 376 273 116 57 chr6 58005415 58005784 -124409458 - L1MC4a LINE L1 -61 6060 5657 224 172 43 54 chr6 58008810 58008903 -124406339 + (TTATA)n Simple_repeat Simple_repeat 4 95 0 319 318 21 58 chr6 58010300 58010392 -124404850 + MIR3 SINE MIR 16 99 -109 1107 215 157 71 chr6 58010392 58010857 -124404385 + MLT1D LTR MaLR 1 505 0 319 318 21 58 chr6 58010857 58010953 -124404289 + MIR3 SINE MIR 99 197 -11 2294 150 26 0 chr6 58011688 58012027 -124403215 - MER7A DNA MER2_type 0 346 1 289 253 0 23 chr6 58012027 58012109 -124403133 + (TA)n Simple_repeat Simple_repeat 2 81 0 894 198 40 17 chr6 58012469 58012646 -124402596 + MER5A DNA MER1_type 4 184 -5 215 351 53 23 chr6 58013368 58013499 -124401743 + MIR SINE MIR 20 154 -108 248 305 61 0 chr6 58013629 58013711 -124401531 + L2 LINE L2 3208 3294 -19 329 271 67 2 chr6 58013762 58013900 -124401342 + MIR SINE MIR 60 205 -57 189 107 0 0 chr6 58015249 58015277 -124399965 + (TAA)n Simple_repeat Simple_repeat 1 28 0 396 282 46 15 chr6 58015282 58015413 -124399829 - MIR SINE MIR -11 251 117 317 319 121 24 chr6 58016252 58016418 -124398824 + MIR3 SINE MIR 22 203 -5 221 267 17 17 chr6 58016872 58016932 -124398310 - L2 LINE L2 -76 3196 3137 339 299 55 16 chr6 58017036 58017163 -124398079 + MIR SINE MIR 7 138 -124 1184 160 30 10 chr6 58017229 58017429 -124397813 - MER20 DNA MER1_type 0 219 16 493 298 128 9 chr6 58017703 58017921 -124397321 - MIR SINE MIR 0 262 19 288 200 50 25 chr6 58018436 58018516 -124396726 + MIR SINE MIR 57 138 -124 463 120 13 27 chr6 58018579 58018654 -124396588 - MER20 DNA MER1_type 0 219 146 2218 107 0 0 chr6 58019918 58020208 -124395034 - AluSc SINE Alu -19 290 1 183 303 81 61 chr6 58020234 58020333 -124394909 + L2 LINE L2 3099 3199 -73 315 0 0 0 chr6 58021265 58021300 -124393942 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2016 129 61 3 chr6 58021743 58022038 -124393204 - AluJb SINE Alu 0 312 1 230 204 0 0 chr6 58022072 58022121 -124393121 - LTR66 LTR ERVL -164 446 398 257 73 0 24 chr6 58022125 58022166 -124393076 + (CATA)n Simple_repeat Simple_repeat 4 43 0 655 127 18 9 chr6 58022914 58023024 -124392218 - MER114 LTR ERV -537 111 1 28 29 0 0 chr6 58023079 58023114 -124392128 + AT_rich Low_complexity Low_complexity 1 35 0 35 71 0 0 chr6 58023333 58023403 -124391839 + AT_rich Low_complexity Low_complexity 1 70 0 1375 175 98 21 chr6 58023672 58023958 -124391284 - AluJo SINE Alu -4 308 1 332 298 102 44 chr6 58027032 58027238 -124388004 + MIR SINE MIR 47 262 0 1106 189 18 31 chr6 58027341 58027563 -124387679 - MER20 DNA MER1_type 0 219 1 239 274 0 0 chr6 58028825 58028876 -124386366 + (TG)n Simple_repeat Simple_repeat 2 52 0 231 172 69 46 chr6 58028876 58028916 -124386326 - LTR66 LTR ERVL -171 439 401 417 20 0 0 chr6 58028916 58028966 -124386276 + (GA)n Simple_repeat Simple_repeat 2 51 0 231 172 69 46 chr6 58028966 58029012 -124386230 - LTR66 LTR ERVL -209 401 351 2080 116 0 32 chr6 58030370 58030681 -124384561 + AluSx SINE Alu 10 310 -2 230 328 132 64 chr6 58031168 58031464 -124383778 - L2 LINE L2 -16 3256 2941 387 233 90 15 chr6 58032286 58032419 -124382823 + MIR SINE MIR 86 228 -34 257 314 36 36 chr6 58033447 58033587 -124381655 + MIR SINE MIR 123 262 0 226 44 22 44 chr6 58034335 58034380 -124380862 + (CAAAAA)n Simple_repeat Simple_repeat 1 44 0 235 286 79 43 chr6 58034514 58034654 -124380588 + MIR SINE MIR 118 262 0 925 240 58 21 chr6 58035396 58035638 -124379604 + MIR SINE MIR 8 258 -4 187 159 0 91 chr6 58039056 58039100 -124376142 + L3 LINE CR1 760 799 -778 792 278 57 12 chr6 58039463 58039711 -124375531 + MIR SINE MIR 3 261 -1 255 306 122 0 chr6 58040813 58040911 -124374331 + L2 LINE L2 3199 3308 -5 623 297 69 0 chr6 58043453 58043655 -124371587 + MIR SINE MIR 29 244 -18 192 278 146 46 chr6 58044183 58044334 -124370908 - MIR3 SINE MIR -1 207 42 1484 174 32 6 chr6 58044571 58044887 -124370355 + MER33 DNA MER1_type 1 324 0 359 320 41 25 chr6 58045263 58045385 -124369857 - L2 LINE L2 -8 3264 3141 684 205 113 0 chr6 58047254 58047405 -124367837 - MER5A DNA MER1_type -15 174 7 247 174 0 0 chr6 58049653 58049699 -124365543 - L1MA8 LINE L1 -4 6287 6242 238 169 14 28 chr6 58050937 58051008 -124364234 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 204 40 0 0 chr6 58051012 58051037 -124364205 + (TG)n Simple_repeat Simple_repeat 1 25 0 1929 155 0 0 chr6 58051038 58051316 -124363926 - AluSx SINE Alu -34 278 1 276 250 0 69 chr6 58051496 58051568 -124363674 - L2 LINE L2 -5 3267 3201 189 167 33 17 chr6 58052135 58052195 -124363047 + CT-rich Low_complexity Low_complexity 1 61 0 220 377 0 0 chr6 58053779 58053840 -124361402 - L2 LINE L2 -87 3185 3125 1195 285 97 5 chr6 58054596 58055021 -124360221 + LTR16B LTR ERVL 1 464 0 622 265 66 38 chr6 58055205 58055416 -124359826 + LTR33 LTR ERVL 3 219 -302 557 263 68 34 chr6 58055473 58055678 -124359564 + LTR33 LTR ERVL 304 515 -6 7813 39 16 5 chr6 58055850 58057042 -124358200 - L1PA4 LINE L1 -1 6154 4956 180 313 31 31 chr6 58057063 58057159 -124358083 + L2 LINE L2 2661 2756 -558 1916 168 0 7 chr6 58057207 58057516 -124357726 - AluJb SINE Alu -5 307 1 869 251 96 60 chr6 58057533 58058107 -124357135 - L2 LINE L2 -1 3312 2716 714 309 75 42 chr6 58058103 58058598 -124356644 - L2 LINE L2 -25 3288 2778 * 23 0 0 0 chr6 58058603 58058626 -124356616 + AT_rich Low_complexity Low_complexity 1 23 0 1056 103 0 0 chr6 58058626 58058772 -124356470 - AluY SINE Alu 0 311 166 1504 148 16 68 chr6 58058803 58059113 -124356129 + AluJo SINE Alu 1 294 -18 7149 37 3 0 chr6 58059113 58060231 -124355011 + L1PA4 LINE L1 4977 6096 -59 11853 24 0 0 chr6 58060331 58061970 -124353272 - L1P1 LINE L1 -428 5727 4034 1837 147 3 7 chr6 58062058 58062344 -124352898 + AluSq SINE Alu 6 290 -23 23792 34 0 1 chr6 58062564 58065403 -124349839 - L1P LINE L1 -946 5200 2363 265 325 107 0 chr6 58065900 58066069 -124349173 + MIR SINE MIR 74 260 -2 189 289 133 0 chr6 58066418 58066501 -124348741 - L2 LINE L2 -2 3311 3218 212 238 16 0 chr6 58066530 58066593 -124348649 + CT-rich Low_complexity Low_complexity 6 69 0 342 285 49 32 chr6 58066981 58067104 -124348138 + MIR SINE MIR 18 142 -120 3887 149 8 73 chr6 58067147 58067886 -124347356 + LTR8 LTR ERV1 1 691 0 186 252 68 107 chr6 58069336 58069439 -124345803 - L2 LINE L2 -4 3268 3170 1417 226 80 149 chr6 58069998 58070288 -124344954 - L2 LINE L2 -1700 1614 1305 264 83 0 0 chr6 58070288 58070324 -124344918 - LTR41 LTR ERVL -735 38 3 1417 226 80 149 chr6 58070324 58070763 -124344479 - L2 LINE L2 -2009 1305 903 775 314 73 75 chr6 58071136 58072103 -124343139 - L2 LINE L2 -735 2579 1615 20333 50 1 4 chr6 58072408 58074882 -124340360 - L1P LINE L1 -3677 2469 3 1999 151 3 3 chr6 58076026 58076337 -124338905 + AluSx SINE Alu 1 311 -1 482 230 0 0 chr6 58076369 58076456 -124338786 + MER81 DNA DNA 1 87 -27 450 244 17 34 chr6 58077273 58077392 -124337850 + MLT1G LTR MaLR 1 117 -473 1671 170 14 0 chr6 58077392 58077669 -124337573 + AluJb SINE Alu 1 281 -31 390 269 8 37 chr6 58077773 58077907 -124337335 - MIR SINE MIR -71 191 62 252 287 107 41 chr6 58078548 58078670 -124336572 - MIR SINE MIR -56 206 77 1383 213 82 46 chr6 58080025 58080462 -124334780 + LTR16A1 LTR ERVL 1 453 -4 229 289 79 33 chr6 58080838 58080990 -124334252 + MIR SINE MIR 104 262 0 32 26 0 0 chr6 58081669 58081708 -124333534 + AT_rich Low_complexity Low_complexity 1 39 0 1743 183 140 45 chr6 58081713 58082156 -124333086 + MLT1D LTR MaLR 1 485 -20 355 274 85 26 chr6 58082929 58083082 -124332160 - MER103 DNA DNA -3 163 2 538 263 0 0 chr6 58083884 58084002 -124331240 - MIR3 SINE MIR -45 163 46 1332 78 0 0 chr6 58084508 58084674 -124330568 + L1PA4 LINE L1 5987 6152 -3 21 71 0 0 chr6 58084757 58084799 -124330443 + AT_rich Low_complexity Low_complexity 1 42 0 991 287 263 15 chr6 58084850 58085527 -124329715 - L2 LINE L2 -701 2613 1769 182 224 41 0 chr6 58085575 58085624 -124329618 - L2 LINE L2 -1635 1679 1629 319 254 45 36 chr6 58085984 58086094 -124329148 + L2 LINE L2 3160 3270 -2 365 137 49 20 chr6 58086095 58086197 -124329045 + GA-rich Low_complexity Low_complexity 4 108 0 608 228 133 14 chr6 58086225 58086436 -124328806 + L1MA9 LINE L1 6047 6282 -30 232 226 30 45 chr6 58087073 58087206 -124328036 + GA-rich Low_complexity Low_complexity 3 133 0 262 377 0 0 chr6 58087683 58087805 -124327437 + L2 LINE L2 2534 2655 -659 1871 226 62 80 chr6 58087827 58088429 -124326813 + MLT1E LTR MaLR 1 591 -2 342 334 188 22 chr6 58088477 58089115 -124326127 + L2 LINE L2 2006 2749 -565 3657 209 55 63 chr6 58089214 58090426 -124324816 - L1ME1 LINE L1 -5 6230 5027 2257 111 0 7 chr6 58090426 58090724 -124324518 - AluSc SINE Alu -13 296 1 3657 209 55 63 chr6 58090724 58091218 -124324024 - L1ME1 LINE L1 -1208 5027 4531 1984 152 0 0 chr6 58091219 58091502 -124323740 - AluSx SINE Alu -20 292 10 890 218 126 11 chr6 58091536 58091807 -124323435 - L1ME1 LINE L1 -6060 336 35 408 332 33 106 chr6 58091822 58092147 -124323095 + L2 LINE L2 2894 3186 -86 1628 154 0 73 chr6 58092147 58092477 -124322765 - AluJo SINE Alu -1 311 6 408 332 33 106 chr6 58092477 58092549 -124322693 + L2 LINE L2 3186 3262 -10 210 340 0 0 chr6 58092590 58092643 -124322599 + L2 LINE L2 3134 3186 -86 334 246 123 33 chr6 58092710 58092932 -124322310 - L1MC/D LINE L1 -528 5638 5383 278 252 10 78 chr6 58092999 58093102 -124322140 + LTR33 LTR ERVL 10 105 -416 511 268 113 21 chr6 58093131 58093325 -124321917 + LTR33 LTR ERVL 296 507 -14 379 224 22 15 chr6 58093455 58093589 -124321653 - L1MC/D LINE L1 -815 5331 5197 406 270 27 27 chr6 58093937 58094048 -124321194 + L2 LINE L2 3186 3296 -17 258 32 0 0 chr6 58094048 58094079 -124321163 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 584 205 137 0 chr6 58096467 58096584 -124318658 + FLAM_A SINE Alu 1 133 0 1708 272 55 28 chr6 58097089 58097630 -124317612 + Charlie2 DNA MER1_type 35 590 -2192 245 278 8 38 chr6 58097911 58098044 -124317198 + (TTCA)n Simple_repeat Simple_repeat 3 131 0 2063 302 74 19 chr6 58098045 58098178 -124317064 - L2 LINE L2 0 3313 3189 1907 245 88 30 chr6 58098178 58098738 -124316504 - MLT1E LTR MaLR -1 592 1 2063 302 74 19 chr6 58098738 58099581 -124315661 - L2 LINE L2 -124 3189 2259 1358 229 63 15 chr6 58100162 58100559 -124314683 + Charlie2a DNA MER1_type 1459 1874 -988 1243 232 110 38 chr6 58100572 58100847 -124314395 - LTR40c LTR ERVL -5 460 142 207 69 0 0 chr6 58100847 58100876 -124314366 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1243 232 110 38 chr6 58100876 58101027 -124314215 - LTR40c LTR ERVL -323 142 3 * 2023 224 49 8 chr6 58101027 58101556 -124313686 + Charlie2a DNA MER1_type 1864 2414 -448 225 0 0 0 chr6 58101564 58101589 -124313653 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1133 176 10 5 chr6 58101589 58101782 -124313460 - AluJb SINE Alu -32 280 87 1086 243 63 24 chr6 58101815 58102230 -124313012 + Charlie2a DNA MER1_type 2415 2845 -17 21 0 0 0 chr6 58102237 58102258 -124312984 + AT_rich Low_complexity Low_complexity 1 21 0 302 314 59 13 chr6 58102418 58102571 -124312671 - L3b LINE CR1 -206 1377 1218 253 233 33 0 chr6 58102601 58102661 -124312581 + GA-rich Low_complexity Low_complexity 3 64 0 211 294 29 0 chr6 58103149 58103217 -124312025 + MIR3 SINE MIR 98 167 -41 203 238 82 74 chr6 58103370 58103492 -124311750 - MIR SINE MIR -66 196 74 21 0 0 0 chr6 58105391 58105412 -124309830 + AT_rich Low_complexity Low_complexity 1 21 0 360 324 46 113 chr6 58105711 58106128 -124309114 + L2 LINE L2 2872 3260 -12 375 60 0 0 chr6 58106656 58106706 -124308536 + (GGAGA)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr6 58108039 58108064 -124307178 + AT_rich Low_complexity Low_complexity 1 25 0 1108 126 6 0 chr6 58108776 58108943 -124306299 + MER5A DNA MER1_type 1 168 -21 180 240 53 53 chr6 58109841 58109916 -124305326 - MER5A DNA MER1_type -50 139 65 265 296 34 84 chr6 58109975 58110154 -124305088 - MER5B DNA MER1_type -6 172 3 * 287 315 90 51 chr6 58110149 58110327 -124304915 + MIR SINE MIR 3 187 -75 31 110 0 0 chr6 58111603 58111739 -124303503 + AT_rich Low_complexity Low_complexity 1 136 0 395 181 60 0 chr6 58111783 58111866 -124303376 - MIR SINE MIR -91 171 84 258 238 69 30 chr6 58113888 58113989 -124301253 + MIR SINE MIR 107 211 -51 946 176 60 65 chr6 58116369 58116585 -124298657 + MER20 DNA MER1_type 2 216 -3 362 339 39 11 chr6 58117647 58117827 -124297415 - MIR SINE MIR -75 187 3 456 214 20 10 chr6 58118064 58118162 -124297080 - MER5A DNA MER1_type 0 189 91 626 253 31 10 chr6 58118285 58118479 -124296763 + L1ME3A LINE L1 5734 5931 -239 2037 139 7 0 chr6 58118682 58118984 -124296258 + AluSx SINE Alu 1 304 -8 30 83 0 0 chr6 58119031 58119103 -124296139 + AT_rich Low_complexity Low_complexity 1 72 0 247 156 67 0 chr6 58120095 58120140 -124295102 + MIR SINE MIR 119 166 -96 1150 192 17 58 chr6 58120140 58120380 -124294862 + AluJo SINE Alu 3 232 -80 453 276 39 39 chr6 58120601 58120782 -124294460 + MIR SINE MIR 8 188 -74 2325 113 0 3 chr6 58120997 58121307 -124293935 - AluSx SINE Alu -3 309 1 819 220 84 16 chr6 58121579 58121770 -124293472 + MIR SINE MIR 33 236 -26 2364 105 0 0 chr6 58123234 58123538 -124291704 - AluSc SINE Alu -5 304 1 225 264 154 11 chr6 58124222 58124313 -124290929 - HAL1 LINE L1 0 2507 2404 269 303 0 20 chr6 58124683 58124782 -124290460 - L3b LINE CR1 -207 1376 1280 232 105 26 0 chr6 58125009 58125047 -124290195 + MADE1 DNA Mariner 1 39 -41 330 26 0 0 chr6 58125271 58125310 -124289932 + (CA)n Simple_repeat Simple_repeat 1 39 0 1229 225 92 24 chr6 58125311 58125669 -124289573 - MLT2D LTR ERVL -21 533 1 288 0 0 0 chr6 58126806 58126838 -124288404 + (CA)n Simple_repeat Simple_repeat 2 33 0 201 242 65 0 chr6 58128060 58128122 -124287120 - MIR SINE MIR -71 191 126 21 0 0 0 chr6 58128622 58128643 -124286599 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr6 58128766 58128818 -124286424 + AT_rich Low_complexity Low_complexity 1 52 0 1401 297 87 55 chr6 58128886 58130446 -124284796 + L1ME4a LINE L1 3562 5171 -975 291 280 4 0 chr6 58130573 58130690 -124284552 + L1ME4a LINE L1 5353 5469 -718 4888 112 7 16 chr6 58131044 58131752 -124283490 + THE1C-int LTR MaLR 879 1580 0 1823 170 66 38 chr6 58131752 58132117 -124283125 + THE1C LTR MaLR 1 375 0 281 250 53 0 chr6 58132573 58132649 -124282593 - MIR3 SINE MIR -45 163 84 193 357 57 0 chr6 58132685 58132755 -124282487 - MIR3 SINE MIR -125 83 10 916 260 44 8 chr6 58132775 58133025 -124282217 + MIR SINE MIR 4 262 0 1450 185 66 21 chr6 58133893 58134228 -124281014 - MER39 LTR ERV1 -1 706 357 748 178 89 0 chr6 58134399 58134568 -124280674 + Charlie5 DNA MER1_type 2441 2624 0 204 291 194 30 chr6 58134757 58134922 -124280320 + MIR3 SINE MIR 16 207 -1 266 335 39 56 chr6 58135242 58135421 -124279821 - L2 LINE L2 -1 3271 3096 431 336 13 47 chr6 58135514 58135746 -124279496 + MIR SINE MIR 13 236 -26 1663 173 48 3 chr6 58136187 58136476 -124278766 - AluJo SINE Alu -10 302 1 893 276 125 19 chr6 58136631 58136702 -124278540 + L1ME4a LINE L1 5568 5630 -491 1508 95 20 5 chr6 58136702 58136929 -124278313 - AluSq SINE Alu 0 314 85 893 276 125 19 chr6 58136929 58137334 -124277908 + L1ME4a LINE L1 5630 6097 -24 6398 144 10 9 chr6 58137778 58139110 -124276132 + L1PA16 LINE L1 4836 6166 0 2719 88 44 0 chr6 58139313 58139653 -124275589 - THE1A LTR MaLR 0 355 1 11909 99 15 5 chr6 58139653 58141216 -124274026 - THE1A-int LTR MaLR 0 1580 1 2899 80 11 0 chr6 58141216 58141567 -124273675 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr6 58142045 58142070 -124273172 + AT_rich Low_complexity Low_complexity 1 25 0 1767 140 0 44 chr6 58142484 58142777 -124272465 + AluSx SINE Alu 1 280 -32 1093 40 7 14 chr6 58142779 58142927 -124272315 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 212 320 70 10 chr6 58143473 58143573 -124271669 - MIR SINE MIR -125 137 32 2401 61 0 8 chr6 58146091 58146378 -124268864 + AluSq SINE Alu 1 285 -28 204 0 0 36 chr6 58146378 58146406 -124268836 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 555 283 78 26 chr6 58146424 58146615 -124268627 - MIR SINE MIR -43 219 19 238 188 0 21 chr6 58146714 58146762 -124268480 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 216 229 10 52 chr6 58147318 58147414 -124267828 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 313 368 71 6 chr6 58148933 58149115 -124266127 + MIR SINE MIR 3 196 -66 305 335 25 55 chr6 58149374 58149610 -124265632 + L1ME4a LINE L1 5714 5942 -179 520 207 54 0 chr6 58150042 58150153 -124265089 + L2 LINE L2 3194 3310 -3 514 288 164 14 chr6 58150325 58150544 -124264698 - MIR SINE MIR -6 256 5 24 0 0 0 chr6 58152797 58152821 -124262421 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 58152849 58152874 -124262368 + AT_rich Low_complexity Low_complexity 1 25 0 267 276 103 0 chr6 58153331 58153418 -124261824 - MIR3 SINE MIR -41 167 72 217 385 154 0 chr6 58154406 58154497 -124260745 - L2 LINE L2 -25 3247 3143 253 333 74 0 chr6 58154822 58154930 -124260312 - L2 LINE L2 -199 3073 2958 297 229 13 29 chr6 58155490 58155647 -124259595 - LTR33A LTR ERVL -3 520 321 303 259 25 137 chr6 58155661 58155858 -124259384 - LTR33A LTR ERVL -346 177 3 21 36 0 0 chr6 58156418 58156446 -124258796 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 58157477 58157499 -124257743 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 58157919 58157940 -124257302 + AT_rich Low_complexity Low_complexity 1 21 0 201 171 0 0 chr6 58158732 58158767 -124256475 + T-rich Low_complexity Low_complexity 2 36 0 248 375 25 0 chr6 58159296 58159416 -124255826 - L3b LINE CR1 -212 1371 1249 225 132 0 0 chr6 58161597 58161635 -124253607 + (TG)n Simple_repeat Simple_repeat 1 38 0 259 298 75 75 chr6 58161737 58162029 -124253213 + L2 LINE L2 2384 2675 -639 222 343 116 0 chr6 58162561 58162733 -124252509 + L2 LINE L2 2323 2514 -800 327 283 117 30 chr6 58162875 58163038 -124252204 - MLT1J1 LTR MaLR -5 445 260 1059 165 127 34 chr6 58163047 58163338 -124251904 + MER33 DNA MER1_type 1 318 -6 364 234 16 55 chr6 58163401 58163529 -124251713 - MLT1J2 LTR MaLR -325 125 3 205 333 46 52 chr6 58163831 58164005 -124251237 + L2 LINE L2 2690 2862 -452 193 247 65 52 chr6 58164147 58164224 -124251018 + MER5B DNA MER1_type 77 154 -24 * 210 226 20 128 chr6 58164168 58164270 -124250972 - MER5A DNA MER1_type -98 91 1 1999 143 0 0 chr6 58164351 58164637 -124250605 + AluSx SINE Alu 1 286 -26 248 99 112 6 chr6 58164637 58164798 -124250444 + (TA)n Simple_repeat Simple_repeat 1 178 0 206 131 71 0 chr6 58164815 58164914 -124250328 + (TA)n Simple_repeat Simple_repeat 1 106 0 322 366 66 24 chr6 58165065 58165278 -124249964 + HAL1b LINE L1 269 490 -858 256 221 0 15 chr6 58165338 58165406 -124249836 + L1ME3A LINE L1 6091 6157 -13 1689 183 0 185 chr6 58165418 58165474 -124249768 + MLT2B2 LTR ERVL 3 68 -447 2094 130 54 35 chr6 58165474 58165842 -124249400 + THE1C LTR MaLR 1 375 0 1689 183 0 185 chr6 58165842 58166325 -124248917 + MLT2B2 LTR ERVL 68 442 -73 1280 370 0 39 chr6 58166940 58167251 -124247991 + AluY SINE Alu 1 299 -12 1074 143 6 0 chr6 58167275 58167450 -124247792 - AluSg SINE Alu -15 295 120 957 132 26 13 chr6 58167451 58167603 -124247639 - AluSg/x SINE Alu -15 297 144 1439 97 0 5 chr6 58167604 58167790 -124247452 - AluSg SINE Alu -125 185 1 815 91 0 0 chr6 58167790 58167889 -124247353 - AluSg SINE Alu -177 133 35 276 294 138 35 chr6 58168321 58168719 -124246523 + L1ME LINE L1 4100 4538 -1608 1058 180 6 0 chr6 58168751 58168923 -124246319 - FAM SINE Alu -2 173 1 3971 219 71 85 chr6 58169333 58170011 -124245231 + HAL1 LINE L1 201 887 -1620 2108 134 7 0 chr6 58170011 58170317 -124244925 + AluSx SINE Alu 1 308 -4 3971 219 71 85 chr6 58170317 58170331 -124244911 + HAL1 LINE L1 887 900 -1607 4670 176 109 29 chr6 58170331 58171323 -124243919 - MER11C LTR ERVK 0 1071 1 3971 219 71 85 chr6 58171323 58172330 -124242912 + HAL1 LINE L1 900 1877 -630 278 220 77 44 chr6 58172717 58172808 -124242434 - MLT1J2 LTR MaLR -76 374 281 23 54 0 0 chr6 58173133 58173170 -124242072 + AT_rich Low_complexity Low_complexity 1 37 0 681 135 0 0 chr6 58173239 58173328 -124241914 + AluS SINE Alu 2 90 -222 580 176 11 0 chr6 58173327 58173418 -124241824 + AluSc SINE Alu 126 217 -92 * 1203 238 99 37 chr6 58173864 58174246 -124240996 + L2 LINE L2 2908 3313 0 510 300 38 55 chr6 58174299 58174666 -124240576 + L1ME LINE L1 5321 5681 -440 1333 27 0 0 chr6 58174819 58174969 -124240273 - L1PA2 LINE L1 -2 6153 6004 24 53 0 0 chr6 58174969 58175007 -124240235 + AT_rich Low_complexity Low_complexity 1 38 0 338 216 36 108 chr6 58175118 58175257 -124239985 - L2 LINE L2 -1851 1463 1335 264 83 0 0 chr6 58175273 58175309 -124239933 - LTR41 LTR ERVL -735 38 3 933 250 99 92 chr6 58175309 58175745 -124239497 - L2 LINE L2 -1973 1341 903 755 315 73 75 chr6 58176115 58177082 -124238160 - L2 LINE L2 -735 2579 1615 2277 105 10 0 chr6 58177275 58177580 -124237662 - AluSx SINE Alu 0 312 5 953 141 43 12 chr6 58178308 58178471 -124236771 - AluSx SINE Alu -13 299 132 574 265 102 12 chr6 58179617 58179783 -124235459 - MIR SINE MIR -64 198 18 213 312 97 21 chr6 58180204 58180297 -124234945 + MIR3 SINE MIR 85 184 -24 2135 107 17 0 chr6 58180456 58180746 -124234496 - AluSx SINE Alu -17 295 1 955 132 0 0 chr6 58180746 58180882 -124234360 - AluSx SINE Alu -177 136 1 841 133 133 0 chr6 58181113 58181263 -124233979 - AluSg/x SINE Alu -13 299 130 1730 129 8 0 chr6 58181363 58181604 -124233638 + AluSx SINE Alu 38 280 -32 324 0 0 0 chr6 58181605 58181641 -124233601 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 229 300 14 0 chr6 58181737 58181807 -124233435 - MIR SINE MIR -16 246 176 2161 113 0 3 chr6 58182248 58182549 -124232693 - AluSx SINE Alu -7 305 6 7825 101 8 8 chr6 58182637 58183801 -124231441 + L1P LINE L1 4034 5197 -949 3179 46 2 4 chr6 58183930 58186185 -124229057 + L1PA3 LINE L1 3612 5916 -239 758 205 10 7 chr6 58186666 58186836 -124228406 + L1ME1 LINE L1 5391 5561 -605 1831 176 153 5 chr6 58186839 58187265 -124227977 + LTR54B LTR ERV1 8 496 -2 590 199 167 6 chr6 58187265 58187421 -124227821 + L1ME1 LINE L1 5558 5738 -428 1154 199 82 37 chr6 58187421 58187813 -124227429 + MSTC LTR MaLR 1 428 0 6094 242 78 36 chr6 58187814 58189479 -124225763 + MSTC-int LTR MaLR 1 1735 0 240 125 75 0 chr6 58189481 58189521 -124225721 + L1MA6 LINE L1 6248 6290 -10 1056 174 103 14 chr6 58189628 58189841 -124225401 + MSTC LTR MaLR 197 428 0 745 209 25 6 chr6 58189841 58190004 -124225238 + L1ME1 LINE L1 5736 5901 -265 21 36 0 0 chr6 58190048 58190076 -124225166 + AT_rich Low_complexity Low_complexity 1 28 0 357 131 0 0 chr6 58190975 58191036 -124224206 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 1421 192 11 45 chr6 58191255 58191542 -124223700 + AluJo SINE Alu 29 305 -7 423 317 102 63 chr6 58193929 58194698 -124220544 + L2 LINE L2 2212 3010 -262 2034 140 3 0 chr6 58194726 58195019 -124220223 - AluSx SINE Alu -18 294 1 2099 177 102 30 chr6 58197065 58197534 -124217708 - MLT1D LTR MaLR -2 503 1 2470 62 0 13 chr6 58197549 58197854 -124217388 - AluY SINE Alu -10 301 1 1515 196 19 32 chr6 58198620 58198931 -124216311 + AluJo SINE Alu 1 307 -5 259 302 142 0 chr6 58198985 58199091 -124216151 - MLT1G3 LTR MaLR -6 549 429 640 229 78 30 chr6 58199109 58199275 -124215967 + MER45A DNA AcHobo 4 177 -1 732 236 52 58 chr6 58199276 58199554 -124215688 - MLT1G3 LTR MaLR -137 412 106 448 269 42 26 chr6 58200012 58200205 -124215037 + MIR SINE MIR 66 261 -1 571 235 29 7 chr6 58201148 58201284 -124213958 - MIR SINE MIR -36 226 88 21 71 0 0 chr6 58201421 58201463 -124213779 + AT_rich Low_complexity Low_complexity 1 42 0 732 248 34 47 chr6 58201763 58201997 -124213245 - MIR SINE MIR -23 239 9 359 294 65 28 chr6 58202616 58202830 -124212412 - MIR SINE MIR 0 262 41 377 270 175 0 chr6 58203620 58203757 -124211485 + MIR3 SINE MIR 27 187 -21 382 350 64 0 chr6 58203999 58204202 -124211040 + L2 LINE L2 2844 3059 -213 1493 163 78 39 chr6 58204297 58204455 -124210787 - AluJo SINE Alu -19 293 118 222 37 0 0 chr6 58204455 58204482 -124210760 + (TG)n Simple_repeat Simple_repeat 2 28 0 1493 163 78 39 chr6 58204482 58204605 -124210637 - AluJo SINE Alu -194 118 1 25 31 0 0 chr6 58205662 58205694 -124209548 + AT_rich Low_complexity Low_complexity 1 32 0 310 270 166 18 chr6 58206266 58206429 -124208813 + MIR SINE MIR 24 210 -52 2380 153 32 5 chr6 58206713 58207113 -124208129 + LTR57 LTR ERVL 1 411 0 249 282 48 39 chr6 58208437 58208540 -124206702 + L2 LINE L2 2950 3053 -219 237 65 0 0 chr6 58208712 58208743 -124206499 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 2438 95 0 0 chr6 58209138 58209442 -124205800 + AluSx SINE Alu 1 304 -8 211 300 14 0 chr6 58209883 58209953 -124205289 + MIR SINE MIR 176 246 -16 288 0 0 0 chr6 58210049 58210081 -124205161 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2117 118 4 0 chr6 58210082 58210361 -124204881 - AluSx SINE Alu -32 280 1 344 313 6 42 chr6 58210639 58210805 -124204437 - MIR SINE MIR -56 206 47 525 265 102 12 chr6 58211912 58212078 -124203164 - MIR SINE MIR -64 198 18 187 312 97 21 chr6 58212499 58212592 -124202650 + MIR3 SINE MIR 85 184 -24 2169 110 14 0 chr6 58212751 58213042 -124202200 - AluSx SINE Alu -17 295 1 1074 96 0 0 chr6 58213042 58213178 -124202064 - AluSq/x SINE Alu -177 136 1 2870 183 18 112 chr6 58214085 58215088 -124200154 - MER21A LTR ERV1 -19 912 70 315 220 0 0 chr6 58215197 58215256 -124199986 - MER21A LTR ERV1 -859 72 14 242 226 94 0 chr6 58217191 58217244 -124197998 - L2 LINE L2 -14 3258 3201 183 310 28 14 chr6 58218318 58218389 -124196853 - L2 LINE L2 -10 3262 3191 1950 134 13 26 chr6 58218906 58219212 -124196030 + AluJb SINE Alu 1 302 -10 962 141 43 12 chr6 58219604 58219767 -124195475 + AluSg/x SINE Alu 130 297 -13 1992 148 3 7 chr6 58220495 58220792 -124194450 + AluJb SINE Alu 5 300 -12 205 254 17 0 chr6 58220900 58220959 -124194283 + CT-rich Low_complexity Low_complexity 1 60 0 1776 159 0 14 chr6 58221469 58221759 -124193483 + AluJo SINE Alu 1 286 -26 189 0 0 0 chr6 58222018 58222039 -124193203 + (GA)n Simple_repeat Simple_repeat 1 21 0 422 155 0 68 chr6 58222148 58222251 -124192991 + MER5A DNA MER1_type 9 104 -85 324 272 10 10 chr6 58223729 58223832 -124191410 + L3 LINE CR1 1467 1569 -8 212 189 0 0 chr6 58223891 58223928 -124191314 + (TG)n Simple_repeat Simple_repeat 1 37 0 283 282 173 6 chr6 58224774 58224930 -124190312 - MIR3 SINE MIR -10 198 17 1531 108 8 58 chr6 58225044 58225285 -124189957 + MER1B DNA MER1_type 104 332 -7 2068 113 7 11 chr6 58225477 58225794 -124189448 - AluSq SINE Alu 0 316 1 1917 136 7 4 chr6 58225850 58226165 -124189077 - AluSx SINE Alu 0 316 1 472 296 103 25 chr6 58226423 58226666 -124188576 + L1ME LINE L1 5480 5741 -380 2357 100 3 0 chr6 58227170 58227469 -124187773 + AluSp SINE Alu 1 300 -13 360 257 93 7 chr6 58227497 58227637 -124187605 + MIR SINE MIR 63 214 -48 1600 156 83 4 chr6 58228092 58228368 -124186874 + AluJo SINE Alu 1 298 -14 1915 114 68 4 chr6 58228832 58229113 -124186129 + AluSx SINE Alu 1 299 -13 1921 156 13 13 chr6 58229342 58229644 -124185598 + AluJb SINE Alu 1 302 -10 282 207 0 0 chr6 58229656 58229714 -124185528 - MIR3 SINE MIR -27 181 124 233 271 186 8 chr6 58230567 58230685 -124184557 - MIR SINE MIR -82 180 42 935 116 0 16 chr6 58231512 58231641 -124183601 - FLAM_C SINE Alu -16 127 1 1947 142 13 19 chr6 58232284 58232595 -124182647 + AluJb SINE Alu 1 309 -3 566 307 117 3 chr6 58233968 58234251 -124180991 + L1MC/D LINE L1 5510 5824 -1984 836 158 8 0 chr6 58234260 58234387 -124180855 + AluJo SINE Alu 7 134 -178 2468 60 7 13 chr6 58236077 58236379 -124178863 - AluY SINE Alu -11 300 1 1925 139 7 0 chr6 58236512 58236799 -124178443 - AluJb SINE Alu -13 299 11 224 300 0 30 chr6 58236847 58236947 -124178295 + CT-rich Low_complexity Low_complexity 1 97 0 406 211 74 0 chr6 58237813 58237908 -124177334 + MER5B DNA MER1_type 77 178 0 187 238 127 0 chr6 58238855 58238918 -124176324 + MER5A DNA MER1_type 97 167 -22 380 237 75 0 chr6 58238918 58239011 -124176231 - MIR3 SINE MIR -54 154 55 2407 93 0 16 chr6 58239029 58239342 -124175900 + AluSg SINE Alu 3 310 0 199 381 0 0 chr6 58239793 58239856 -124175386 + L3 LINE CR1 1306 1368 -209 1419 128 144 0 chr6 58239927 58240170 -124175072 + AluJb SINE Alu 14 291 -21 2244 112 3 6 chr6 58240344 58240658 -124174584 + AluSp SINE Alu 1 313 0 193 378 0 14 chr6 58240716 58240790 -124174452 + L2 LINE L2 2982 3054 -218 183 306 0 0 chr6 58241654 58241703 -124173539 - MIR SINE MIR -108 154 106 1763 165 3 32 chr6 58243381 58243690 -124171552 + AluJb SINE Alu 1 300 -12 852 144 0 0 chr6 58243906 58244047 -124171195 - FLAM_C SINE Alu 0 141 1 322 238 24 56 chr6 58244069 58244195 -124171047 + MER5B DNA MER1_type 4 125 -53 550 228 54 30 chr6 58244279 58244446 -124170796 + MIR SINE MIR 48 218 -44 620 266 84 25 chr6 58244468 58244705 -124170537 + L1MC/D LINE L1 5552 5802 -2006 2479 84 0 3 chr6 58246770 58247081 -124168161 + AluSg SINE Alu 1 310 0 1620 222 163 0 chr6 58248830 58249308 -124165934 + L1ME3A LINE L1 5593 6148 -22 721 260 67 9 chr6 58249353 58249576 -124165666 - MIR SINE MIR -12 250 15 280 285 157 29 chr6 58249730 58249902 -124165340 + MIR3 SINE MIR 5 198 -10 209 252 86 36 chr6 58249902 58250041 -124165201 + L2 LINE L2 3158 3303 -10 1543 193 17 17 chr6 58250377 58250677 -124164565 + AluJo SINE Alu 1 300 -12 636 218 102 7 chr6 58250684 58250853 -124164389 + FAM SINE Alu 1 47 0 21 0 0 0 chr6 58252122 58252143 -124163099 + AT_rich Low_complexity Low_complexity 1 21 0 408 149 181 0 chr6 58252763 58252857 -124162385 + L1MA9 LINE L1 6164 6274 -38 640 190 40 2 chr6 58254698 58254834 -124160408 - L1ME3A LINE L1 0 6170 6028 226 281 52 52 chr6 58255429 58255525 -124159717 + MIR3 SINE MIR 102 197 -11 581 230 56 17 chr6 58256489 58256667 -124158575 + MIR SINE MIR 75 259 -3 2139 123 3 7 chr6 58257003 58257305 -124157937 + AluSq SINE Alu 1 301 -12 432 200 257 0 chr6 58257545 58257650 -124157592 - FLAM_C SINE Alu -1 132 1 2238 89 28 0 chr6 58257654 58257945 -124157297 - AluSg SINE Alu -11 299 1 1166 170 66 60 chr6 58258309 58258496 -124156746 - MER33 DNA MER1_type -2261 324 133 1823 136 32 0 chr6 58258496 58258775 -124156467 - AluJo SINE Alu 0 312 25 1166 170 66 60 chr6 58258775 58258904 -124156338 - MER33 DNA MER1_type -2452 133 6 554 287 79 15 chr6 58258956 58259158 -124156084 - MIR SINE MIR 0 262 48 1936 135 38 0 chr6 58259199 58259488 -124155754 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr6 58259570 58259591 -124155651 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 58259630 58259658 -124155584 + AT_rich Low_complexity Low_complexity 1 28 0 226 293 27 0 chr6 58259925 58260000 -124155242 - L2 LINE L2 -553 2761 2685 2266 98 26 3 chr6 58260053 58260359 -124154883 + AluSq SINE Alu 1 313 0 2062 137 39 39 chr6 58260509 58260873 -124154369 + THE1B LTR MaLR 1 364 0 2488 34 0 14 chr6 58261097 58261392 -124153850 + AluY SINE Alu 2 292 -19 22 0 0 0 chr6 58262401 58262423 -124152819 + AT_rich Low_complexity Low_complexity 1 22 0 343 256 12 0 chr6 58262441 58262527 -124152715 - MIR3 SINE MIR -14 194 108 243 272 87 35 chr6 58262627 58262800 -124152442 + L1MEd LINE L1 903 1084 -5035 2350 59 0 11 chr6 58262936 58263250 -124151992 + AluY SINE Alu 1 311 0 1065 167 5 5 chr6 58263313 58263499 -124151743 + MER3 DNA MER1_type 20 205 -4 27 0 0 0 chr6 58264040 58264067 -124151175 + AT_rich Low_complexity Low_complexity 1 27 0 2430 130 41 66 chr6 58264408 58264465 -124150777 + MSTB LTR MaLR 1 58 -368 2311 120 3 0 chr6 58264465 58264774 -124150468 + AluSx SINE Alu 3 312 0 2430 130 41 66 chr6 58264774 58265153 -124150089 + MSTB LTR MaLR 58 426 0 1123 148 67 0 chr6 58265166 58265376 -124149866 - MER44D DNA MER2_type -28 577 299 268 189 57 82 chr6 58265401 58265523 -124149719 - MER51D LTR ERV1 -28 629 511 * 1870 156 67 58 chr6 58265500 58265903 -124149339 - LTR60 LTR ERV1 -7 579 170 1905 83 56 15 chr6 58265903 58266049 -124149193 - AluSx SINE Alu -16 296 133 1978 76 0 0 chr6 58266049 58266287 -124148955 - AluSc SINE Alu -70 239 2 1905 83 56 15 chr6 58266287 58266406 -124148836 - AluSx SINE Alu -179 133 20 1870 156 67 58 chr6 58266406 58266432 -124148810 - LTR60 LTR ERV1 -416 170 146 732 215 47 0 chr6 58266490 58266639 -124148603 - LTR60 LTR ERV1 -430 156 1 * 1409 189 91 0 chr6 58266639 58266913 -124148329 - MER44D DNA MER2_type -401 304 6 254 183 84 0 chr6 58266981 58267052 -124148190 + GA-rich Low_complexity Low_complexity 6 82 0 270 185 33 87 chr6 58267226 58267318 -124147924 + L2 LINE L2 3186 3272 0 2406 95 3 0 chr6 58267467 58267772 -124147470 - AluSp SINE Alu -6 307 2 2232 105 3 3 chr6 58268161 58268456 -124146786 - AluSq SINE Alu -18 295 1 430 273 30 76 chr6 58269496 58269601 -124145641 + MER67B LTR ERV1 1 94 -567 1578 162 25 101 chr6 58269601 58269996 -124145246 - MLT1A1 LTR MaLR 0 365 1 430 273 30 76 chr6 58269996 58270088 -124145154 + MER67B LTR ERV1 94 189 -472 254 310 0 44 chr6 58270183 58270296 -124144946 + MER67A LTR ERV1 372 479 -64 728 140 0 9 chr6 58270536 58270650 -124144592 - MLT1A1 LTR MaLR -252 113 1 2482 126 62 14 chr6 58270650 58271087 -124144155 - L1MB2 LINE L1 -148 6023 5566 1722 159 0 48 chr6 58271332 58271647 -124143595 + AluJo SINE Alu 1 300 -12 2168 163 68 32 chr6 58272836 58273279 -124141963 - LTR2B LTR ERV1 0 490 32 2215 89 0 61 chr6 58273395 58273721 -124141521 + AluSx SINE Alu 1 306 -6 292 309 61 30 chr6 58274298 58274463 -124140779 + MIR3 SINE MIR 30 199 -9 284 265 0 0 chr6 58274583 58274651 -124140591 - L2 LINE L2 -7 3265 3198 2406 65 14 0 chr6 58275690 58275984 -124139258 + AluSp SINE Alu 1 298 -15 285 338 0 27 chr6 58276335 58276483 -124138759 + C-rich Low_complexity Low_complexity 4 147 0 290 256 26 0 chr6 58276484 58276562 -124138680 - L1MC4 LINE L1 -13 8029 7950 186 43 0 0 chr6 58276745 58276768 -124138474 + (GAA)n Simple_repeat Simple_repeat 2 24 0 446 198 194 77 chr6 58277405 58277467 -124137775 + MER102a DNA MER1_type 70 123 -1294 2384 84 0 0 chr6 58277467 58277763 -124137479 + AluSg SINE Alu 1 296 -14 446 198 194 77 chr6 58277763 58277922 -124137320 + MER102a DNA MER1_type 123 317 -13 526 211 77 96 chr6 58277960 58278124 -124137118 - L2 LINE L2 -119 3194 3035 1880 161 7 3 chr6 58278124 58278416 -124136826 - AluJo SINE Alu -19 293 1 526 211 77 96 chr6 58278416 58278512 -124136730 - L2 LINE L2 -278 3035 2939 2262 106 0 3 chr6 58278586 58278889 -124136353 - AluY SINE Alu -9 302 1 1171 206 14 52 chr6 58279155 58279394 -124135848 + L1MD2 LINE L1 6061 6289 -70 2202 125 0 10 chr6 58279394 58279698 -124135544 - AluSc SINE Alu -8 301 1 1171 206 14 52 chr6 58279698 58279745 -124135497 + L1MD2 LINE L1 6289 6336 -23 25 0 0 0 chr6 58279792 58279817 -124135425 + AT_rich Low_complexity Low_complexity 1 25 0 211 355 43 0 chr6 58279890 58279983 -124135259 - L3 LINE CR1 -1189 388 292 222 393 53 0 chr6 58280024 58280174 -124135068 - L3 LINE CR1 -1353 224 67 433 250 11 76 chr6 58280334 58280518 -124134724 + MIR SINE MIR 35 206 -56 203 315 0 0 chr6 58280598 58280652 -124134590 - L3 LINE CR1 -12 1565 1512 556 235 147 5 chr6 58280767 58280971 -124134271 - MIR SINE MIR -10 252 20 1514 191 15 73 chr6 58281103 58281500 -124133742 + MLT1A2 LTR MaLR 1 374 0 425 183 0 0 chr6 58282152 58282223 -124133019 - LTR54 LTR ERV1 -38 472 402 435 308 78 78 chr6 58282741 58282920 -124132322 + L2 LINE L2 2836 3014 -299 2284 91 0 38 chr6 58282920 58283239 -124132003 + AluSg SINE Alu 3 309 -1 435 308 78 78 chr6 58283239 58283536 -124131706 + L2 LINE L2 3013 3312 -1 2003 116 18 0 chr6 58284014 58284325 -124130917 - AluSx SINE Alu 0 316 1 2283 108 0 0 chr6 58285362 58285659 -124129583 + AluY SINE Alu 1 297 -14 21 0 0 0 chr6 58285845 58285866 -124129376 + AT_rich Low_complexity Low_complexity 1 21 0 1916 140 0 34 chr6 58285994 58286309 -124128933 + AluSx SINE Alu 1 305 0 603 300 15 41 chr6 58287221 58287488 -124127754 - MIR SINE MIR 0 262 3 2311 112 0 13 chr6 58287712 58288026 -124127216 - AluSx SINE Alu -2 310 1 2260 86 3 26 chr6 58288754 58289056 -124126186 - AluSc SINE Alu -14 295 1 236 293 107 13 chr6 58289137 58289212 -124126030 + L2 LINE L2 3138 3219 -53 2672 46 0 0 chr6 58289585 58289888 -124125354 - AluY SINE Alu -8 303 1 473 310 16 27 chr6 58289970 58290157 -124125085 - MIR SINE MIR -71 191 7 1977 140 0 24 chr6 58290169 58290488 -124124754 + AluSx SINE Alu 1 312 0 8308 140 10 6 chr6 58290572 58291847 -124123395 - Tigger1 DNA MER2_type -1112 1306 26 271 228 13 25 chr6 58291994 58292073 -124123169 - HERV16 LTR ERVL -336 4660 4583 584 373 45 8 chr6 58292101 58292401 -124122841 - HERV16 LTR ERVL -750 5014 4696 2159 126 3 0 chr6 58292401 58292702 -124122540 + AluSq SINE Alu 1 302 -11 584 373 45 8 chr6 58292702 58292776 -124122466 - HERV16 LTR ERVL -1068 4696 4626 1642 241 89 59 chr6 58292788 58293488 -124121754 - MER50 LTR ERV1 0 734 14 1276 278 72 3 chr6 58293711 58294071 -124121171 - HERV16 LTR ERVL -3708 1288 904 270 125 21 0 chr6 58294076 58294124 -124121118 - MER51C LTR ERV1 0 640 592 2215 107 7 3 chr6 58294125 58294425 -124120817 - AluSx SINE Alu -11 301 1 3687 102 6 23 chr6 58294428 58294607 -124120635 - MER51C LTR ERV1 -114 526 345 2417 93 0 0 chr6 58294607 58294917 -124120325 + AluSg SINE Alu 1 310 0 3687 102 6 23 chr6 58294917 58295295 -124119947 - MER51C LTR ERV1 -295 345 1 1044 275 64 33 chr6 58295366 58295759 -124119483 - HERV16 LTR ERVL -4501 495 91 2902 91 34 59 chr6 58295762 58296234 -124119008 - MER4C LTR ERV1 0 465 6 437 204 204 15 chr6 58296283 58296415 -124118827 - LTR16A LTR ERVL -174 276 120 1085 79 0 72 chr6 58296440 58296592 -124118650 + AluSg SINE Alu 1 141 -169 1984 188 75 25 chr6 58296592 58297029 -124118213 - LTR2B LTR ERV1 0 490 32 1116 130 12 0 chr6 58297048 58297210 -124118032 + AluSg SINE Alu 139 302 -8 24 32 0 0 chr6 58297636 58297667 -124117575 + AT_rich Low_complexity Low_complexity 1 31 0 2254 109 6 0 chr6 58298171 58298482 -124116760 - AluSp SINE Alu 0 313 1 2186 117 3 3 chr6 58298689 58298989 -124116253 - AluSx SINE Alu -9 303 4 219 171 24 0 chr6 58299138 58299179 -124116063 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 269 355 26 61 chr6 58299339 58299750 -124115492 - L2 LINE L2 -160 3112 2709 2457 82 0 3 chr6 58299925 58300230 -124115012 - AluSp SINE Alu -9 304 1 442 304 72 16 chr6 58300985 58301179 -124114063 + LTR67 LTR ERVL 350 554 -3 228 317 117 0 chr6 58301204 58301434 -124113808 - L2 LINE L2 -1230 2084 1828 2209 89 7 0 chr6 58301457 58301738 -124113504 - AluSg SINE Alu -23 287 5 1859 184 0 3 chr6 58301989 58302356 -124112886 + AluJo SINE Alu 1 366 0 334 155 0 0 chr6 58302298 58302540 -124112702 + GA-rich Low_complexity Low_complexity 1 242 0 650 255 103 19 chr6 58302586 58302825 -124112417 + MIR SINE MIR 3 257 -5 1349 204 125 39 chr6 58303531 58303587 -124111655 - L1MA8 LINE L1 0 6291 6241 2390 89 0 3 chr6 58303587 58303889 -124111353 - AluSg SINE Alu -9 301 1 1349 204 125 39 chr6 58303889 58304273 -124110969 - L1MA8 LINE L1 -50 6241 5813 228 247 62 0 chr6 58305545 58305626 -124109616 - L2 LINE L2 0 3313 3228 405 238 122 30 chr6 58305671 58305835 -124109407 + MIR SINE MIR 79 257 -5 427 183 12 24 chr6 58306102 58306184 -124109058 + MLT1K LTR MaLR 143 223 -365 325 267 20 20 chr6 58306189 58306290 -124108952 + MLT1K LTR MaLR 484 584 -4 432 324 120 64 chr6 58306316 58306777 -124108465 - L2 LINE L2 -2 3270 2778 2182 240 36 67 chr6 58307274 58307800 -124107442 + MLT1E LTR MaLR 1 507 -86 855 153 0 0 chr6 58307800 58307937 -124107305 + L1PB4 LINE L1 6018 6154 -2 2182 240 36 67 chr6 58307937 58308022 -124107220 + MLT1E LTR MaLR 507 593 0 395 314 80 29 chr6 58308041 58308280 -124106962 + MLT1L LTR MaLR 3 253 -362 230 233 110 0 chr6 58308321 58308394 -124106848 + MLT1L LTR MaLR 314 394 -221 297 0 0 0 chr6 58308446 58308479 -124106763 + (TA)n Simple_repeat Simple_repeat 2 34 0 1748 121 0 0 chr6 58308481 58308720 -124106522 - AluSc SINE Alu 0 309 71 2380 102 0 0 chr6 58308720 58309023 -124106219 - AluY SINE Alu -6 305 1 537 158 0 0 chr6 58309025 58309107 -124106135 - AluSc SINE Alu -226 83 2 366 243 19 0 chr6 58309123 58309226 -124106016 + MLT1L LTR MaLR 510 614 -1 273 275 12 0 chr6 58309523 58309603 -124105639 + MLT1K LTR MaLR 492 572 -16 347 124 0 23 chr6 58309904 58309983 -124105259 - Alu SINE Alu -20 282 235 23 0 0 0 chr6 58310077 58310100 -124105142 + AT_rich Low_complexity Low_complexity 1 23 0 2145 92 0 0 chr6 58310103 58310365 -124104877 - AluSx SINE Alu -26 286 25 3148 165 44 47 chr6 58310834 58311206 -124104036 - L1MD2 LINE L1 -13 6346 5975 1889 147 80 6 chr6 58311206 58311519 -124103723 + MER1B DNA MER1_type 2 337 0 3148 165 44 47 chr6 58311519 58311807 -124103435 - L1MD2 LINE L1 -384 5975 5688 307 220 17 0 chr6 58311823 58311882 -124103360 + MER112 DNA MER1_type 180 239 -21 2384 103 0 0 chr6 58311882 58312183 -124103059 - AluSx SINE Alu -11 301 1 183 314 34 51 chr6 58312223 58312341 -124102901 + L2 LINE L2 2857 2972 -300 2414 137 61 12 chr6 58312432 58312802 -124102440 + MSTA LTR MaLR 1 394 -34 2269 116 0 0 chr6 58312802 58313105 -124102137 - AluSx SINE Alu -9 303 1 2414 137 61 12 chr6 58313105 58313142 -124102100 + MSTA LTR MaLR 394 428 0 361 155 48 0 chr6 58313145 58313229 -124102013 + GA-rich Low_complexity Low_complexity 3 90 0 561 193 46 0 chr6 58313277 58313386 -124101856 - MER58 DNA MER1_type 0 2420 2307 364 275 63 58 chr6 58313971 58314178 -124101064 - MLT1J LTR MaLR -165 346 139 * 435 318 91 16 chr6 58314174 58314416 -124100826 - MLT1K LTR MaLR -198 390 131 2027 99 88 14 chr6 58314655 58314938 -124100304 + AluY SINE Alu 1 304 -7 1907 146 13 42 chr6 58315009 58315318 -124099924 + AluJb SINE Alu 1 300 -12 322 283 133 0 chr6 58316267 58316380 -124098862 + MIR3 SINE MIR 58 185 -23 180 0 0 0 chr6 58317063 58317083 -124098159 + (TTG)n Simple_repeat Simple_repeat 2 21 0 225 185 15 62 chr6 58317135 58317200 -124098042 - MLT1K LTR MaLR -342 246 185 1755 169 17 47 chr6 58317980 58318298 -124096944 + L1MB7 LINE L1 5820 6127 -57 1674 185 31 0 chr6 58318298 58318584 -124096658 + AluJo SINE Alu 1 295 -17 1755 169 17 47 chr6 58318584 58318625 -124096617 + L1MB7 LINE L1 6127 6168 -16 1564 135 85 32 chr6 58318686 58318835 -124096407 + AluSq SINE Alu 1 141 -172 2385 90 7 0 chr6 58318835 58319135 -124096107 + AluSp SINE Alu 1 302 -11 1564 135 85 32 chr6 58319135 58319267 -124095975 + AluSq SINE Alu 141 297 -16 2219 123 0 0 chr6 58319278 58319578 -124095664 + AluY SINE Alu 1 300 -11 231 370 19 0 chr6 58319900 58320008 -124095234 - L2 LINE L2 -1 3271 3162 1793 174 27 0 chr6 58320905 58321198 -124094044 + AluJo SINE Alu 1 301 -11 247 222 25 0 chr6 58321210 58321291 -124093951 + GA-rich Low_complexity Low_complexity 2 84 0 251 306 116 16 chr6 58321968 58322089 -124093153 + L2 LINE L2 3180 3312 -1 2146 126 10 0 chr6 58323005 58323298 -124091944 + AluSx SINE Alu 1 296 -16 2286 97 0 3 chr6 58323806 58324104 -124091138 - AluSg SINE Alu -13 297 1 259 262 115 16 chr6 58324410 58324532 -124090710 - L2 LINE L2 -1 3312 3179 2117 148 3 0 chr6 58325377 58325688 -124089554 + AluSx SINE Alu 1 312 0 22 0 0 30 chr6 58326071 58326084 -124089158 + AT_rich Low_complexity Low_complexity 1 13 -19 2724 127 35 61 chr6 58326084 58326449 -124088793 + L1MA4 LINE L1 5798 6148 -152 1960 143 0 19 chr6 58326449 58326756 -124088486 + AluJb SINE Alu 11 311 -1 2724 127 35 61 chr6 58326756 58326901 -124088341 + L1MA4 LINE L1 6148 6295 -5 22 0 0 30 chr6 58326901 58326920 -124088322 + AT_rich Low_complexity Low_complexity 13 32 0 2356 78 0 7 chr6 58327555 58327851 -124087391 + AluSq SINE Alu 1 294 -19 214 277 0 0 chr6 58327911 58327976 -124087266 - MIR SINE MIR -100 162 98 1381 125 191 27 chr6 58327976 58328232 -124087010 + AluSg SINE Alu 1 298 -2 1249 144 0 0 chr6 58329939 58330113 -124085129 - AluJo SINE Alu -138 174 1 189 0 0 0 chr6 58331978 58331999 -124083243 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 180 0 0 0 chr6 58332187 58332207 -124083035 + (T)n Simple_repeat Simple_repeat 1 20 0 721 243 21 21 chr6 58332569 58332758 -124082484 - MARNA DNA Mariner -48 538 350 459 258 0 0 chr6 58332932 58333029 -124082213 - Tigger2 DNA MER2_type 0 2718 2622 293 283 22 0 chr6 58333021 58333113 -124082129 + MARNA DNA Mariner 482 575 -11 * 573 265 44 17 chr6 58333483 58333664 -124081578 + MIR SINE MIR 77 262 0 271 136 23 0 chr6 58333880 58333924 -124081318 - LTR24C LTR ERV1 -79 556 512 27 0 0 0 chr6 58334254 58334281 -124080961 + AT_rich Low_complexity Low_complexity 1 27 0 2129 97 31 17 chr6 58334858 58335147 -124080095 - AluSg SINE Alu -17 293 1 1144 145 29 48 chr6 58335177 58335384 -124079858 + MER20 DNA MER1_type 16 218 -1 263 330 10 21 chr6 58335384 58335481 -124079761 + MIR SINE MIR 15 110 -152 1307 133 0 6 chr6 58336050 58336230 -124079012 + AluJo SINE Alu 1 179 -133 395 281 23 8 chr6 58336401 58336529 -124078713 + MER5B DNA MER1_type 3 132 -46 1251 102 48 29 chr6 58336891 58337097 -124078145 + THE1C LTR MaLR 1 210 -165 212 294 55 55 chr6 58338870 58338979 -124076263 + L2 LINE L2 3104 3212 -101 562 256 108 40 chr6 58339051 58339301 -124075941 - L2 LINE L2 -2 3311 3045 410 267 174 0 chr6 58339811 58339983 -124075259 - MIR SINE MIR -3 259 58 219 69 0 0 chr6 58340697 58340726 -124074516 + (TC)n Simple_repeat Simple_repeat 2 30 0 407 272 0 0 chr6 58340743 58340835 -124074407 - L1MC5 LINE L1 -51 7910 7819 270 56 0 0 chr6 58340837 58340873 -124074369 + (TA)n Simple_repeat Simple_repeat 2 37 0 425 183 61 0 chr6 58340878 58340960 -124074282 - L1MC5 LINE L1 -181 7780 7694 683 280 32 0 chr6 58340962 58341151 -124074091 - MIR SINE MIR -67 195 1 2491 136 57 2 chr6 58341955 58342361 -124072881 + MSTA LTR MaLR 1 428 0 1421 192 56 14 chr6 58342506 58342793 -124072449 - AluJo SINE Alu 0 312 14 40 0 0 0 chr6 58343027 58343067 -124072175 + AT_rich Low_complexity Low_complexity 1 40 0 489 200 58 107 chr6 58343239 58343444 -124071798 - MER117 DNA MER1_type 0 197 3 1672 140 16 75 chr6 58343606 58343927 -124071315 - AluJo SINE Alu -10 302 1 740 227 81 53 chr6 58346077 58346324 -124068918 + MIR SINE MIR 6 259 -3 289 254 79 42 chr6 58346388 58346553 -124068689 - L2 LINE L2 -863 2451 2281 2191 94 16 73 chr6 58346579 58346614 -124068628 + L1MB2 LINE L1 5795 5830 -341 2307 90 0 0 chr6 58346614 58346902 -124068340 + AluSg SINE Alu 1 288 -22 2191 94 16 73 chr6 58346902 58346918 -124068324 + L1MB2 LINE L1 5830 5845 -326 2244 133 0 0 chr6 58346918 58347227 -124068015 + AluSx SINE Alu 1 309 -3 2191 94 16 73 chr6 58347227 58347555 -124067687 + L1MB2 LINE L1 5845 6153 -18 2206 91 14 10 chr6 58347557 58347719 -124067523 - AluSx SINE Alu -14 298 133 2529 64 0 3 chr6 58347719 58348030 -124067212 - AluY SINE Alu -1 310 1 2206 91 14 10 chr6 58348030 58348164 -124067078 - AluSx SINE Alu -179 133 1 296 223 17 97 chr6 58348189 58348364 -124066878 - L2 LINE L2 -152 3161 3001 1777 169 31 0 chr6 58349429 58349719 -124065523 + AluJb SINE Alu 1 299 -13 285 343 78 66 chr6 58350114 58350446 -124064796 - L2 LINE L2 -8 3264 2929 447 241 55 24 chr6 58350471 58350695 -124064547 + L1ME2 LINE L1 5665 5897 -267 1406 178 89 19 chr6 58350907 58351177 -124064065 - AluJb SINE Alu -21 291 3 234 262 66 0 chr6 58351416 58351477 -124063765 + MER112 DNA MER1_type 1 65 -195 2760 10 0 0 chr6 58351483 58351781 -124063461 + AluYa5 SINE Alu 1 298 -13 5352 140 46 22 chr6 58352752 58353143 -124062099 + L1PA16 LINE L1 4628 5008 -1158 2388 122 8 60 chr6 58353143 58353527 -124061715 + THE1B LTR MaLR 1 364 0 5352 140 46 22 chr6 58353527 58353705 -124061537 + L1PA16 LINE L1 5008 5180 -986 1711 167 7 13 chr6 58353705 58354004 -124061238 + AluJb SINE Alu 1 297 -15 5352 140 46 22 chr6 58354004 58354937 -124060305 + L1PA16 LINE L1 5180 6159 -7 578 86 0 0 chr6 58355122 58355192 -124060050 - Alu SINE Alu -19 290 221 1868 185 19 25 chr6 58355706 58355807 -124059435 + MLT1A1 LTR MaLR 1 101 -264 3407 125 47 19 chr6 58355807 58356197 -124059045 + MER1A DNA MER1_type 1 410 -2290 2078 144 0 0 chr6 58356197 58356496 -124058746 + AluSx SINE Alu 1 299 -13 3407 125 47 19 chr6 58356496 58356618 -124058624 + MER1A DNA MER1_type 410 527 0 1868 185 19 25 chr6 58356618 58356883 -124058359 + MLT1A1 LTR MaLR 101 365 0 286 241 0 46 chr6 58359286 58359373 -124055869 - L2 LINE L2 0 3313 3231 321 295 47 54 chr6 58359387 58359536 -124055706 - L1ME4a LINE L1 -254 5867 5720 401 337 6 58 chr6 58360107 58360195 -124055047 - MIR3 SINE MIR -39 169 93 1908 108 4 11 chr6 58360195 58360463 -124054779 + AluSx SINE Alu 33 298 -14 401 337 6 58 chr6 58360463 58360546 -124054696 - MIR3 SINE MIR -115 93 7 984 254 45 4 chr6 58361173 58361417 -124053825 + MIR SINE MIR 9 262 0 1994 156 16 0 chr6 58361427 58361734 -124053508 - AluJo SINE Alu 0 312 1 213 39 0 0 chr6 58361749 58361775 -124053467 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 273 279 103 92 chr6 58361816 58362078 -124053164 - L2 LINE L2 -83 3189 2925 2028 180 25 8 chr6 58362550 58362916 -124052326 + MER47B DNA MER2_type 47 418 0 2306 104 0 19 chr6 58363088 58363397 -124051845 + AluSx SINE Alu 1 303 -9 216 273 111 20 chr6 58363560 58363659 -124051583 + L2 LINE L2 2279 2386 -928 201 344 64 25 chr6 58363927 58364084 -124051158 - MIR3 SINE MIR -42 166 4 394 323 61 75 chr6 58364129 58364423 -124050819 - L2 LINE L2 -5 3267 2978 250 308 99 27 chr6 58364890 58365111 -124050131 - L2 LINE L2 -924 2390 2154 2319 115 0 3 chr6 58366297 58366611 -124048631 - AluSq SINE Alu 0 313 1 2152 116 0 3 chr6 58366657 58366958 -124048284 - AluSx SINE Alu -12 300 1 203 244 0 0 chr6 58368157 58368202 -124047040 + CT-rich Low_complexity Low_complexity 2 46 0 239 347 156 12 chr6 58368461 58368634 -124046608 - MIR SINE MIR -36 226 29 350 277 64 119 chr6 58368654 58369015 -124046227 + L2 LINE L2 2899 3239 -33 528 223 147 33 chr6 58369037 58369221 -124046021 - MIR SINE MIR -11 251 47 2124 124 3 3 chr6 58370184 58370474 -124044768 + AluSx SINE Alu 1 290 -22 2193 83 4 0 chr6 58370475 58370751 -124044491 + AluSp SINE Alu 37 313 0 242 284 149 0 chr6 58370755 58370829 -124044413 - MIR3 SINE MIR -15 193 109 1551 145 52 31 chr6 58370898 58371188 -124044054 + AluJo SINE Alu 1 296 -16 207 290 65 0 chr6 58374533 58374595 -124040647 + MER5C DNA MER1_type 19 84 -240 2126 134 0 7 chr6 58374661 58374966 -124040276 - AluJb SINE Alu -9 303 1 288 0 0 0 chr6 58375782 58375814 -124039428 + (A)n Simple_repeat Simple_repeat 1 32 0 268 287 23 11 chr6 58376608 58376695 -124038547 - L2 LINE L2 -2 3311 3224 209 255 98 0 chr6 58377496 58377547 -124037695 - MIR SINE MIR -78 130 75 638 241 316 14 chr6 58378608 58378953 -124036289 - L2 LINE L2 -32 3281 2833 764 291 58 17 chr6 58379382 58379623 -124035619 - MIR SINE MIR 0 262 12 2180 112 13 0 chr6 58380277 58380580 -124034662 - AluSp SINE Alu -6 307 1 1664 204 57 76 chr6 58380980 58381456 -124033786 + MLT1C LTR MaLR 1 467 0 516 121 0 0 chr6 58382083 58382174 -124033068 + (TG)n Simple_repeat Simple_repeat 1 91 0 821 208 107 19 chr6 58382401 58382617 -124032625 - MIR SINE MIR -2 260 26 482 219 122 24 chr6 58382626 58382831 -124032411 - L1MC5 LINE L1 -30 7931 7707 970 201 43 63 chr6 58382854 58383203 -124032039 - L1MC5 LINE L1 -202 7759 7418 250 350 121 7 chr6 58383442 58383582 -124031660 - MIR3 SINE MIR -49 159 4 181 305 0 17 chr6 58383914 58383973 -124031269 + MIR3 SINE MIR 99 156 -52 380 232 102 68 chr6 58384032 58384209 -124031033 + MER112 DNA MER1_type 71 253 -7 305 325 58 8 chr6 58384253 58384373 -124030869 - L2 LINE L2 -2 3311 3186 1796 121 36 0 chr6 58385322 58385570 -124029672 - AluSx SINE Alu -55 257 1 2425 76 7 0 chr6 58386192 58386496 -124028746 - AluSq SINE Alu -6 307 2 21 0 0 0 chr6 58386636 58386657 -124028585 + AT_rich Low_complexity Low_complexity 1 21 0 232 287 30 50 chr6 58387072 58387173 -124028069 + MER5A DNA MER1_type 55 153 -36 871 103 9 0 chr6 58387570 58387686 -124027556 + FLAM_C SINE Alu 2 118 -15 575 167 0 8 chr6 58387687 58387807 -124027435 + GA-rich Low_complexity Low_complexity 1 119 0 21 36 0 0 chr6 58390836 58390864 -124024378 + AT_rich Low_complexity Low_complexity 1 28 0 258 296 59 27 chr6 58390963 58391149 -124024093 - L1ME LINE L1 -216 5905 5714 1460 150 69 75 chr6 58391603 58391909 -124023333 - AluJb SINE Alu -8 304 1 186 333 0 0 chr6 58393119 58393170 -124022072 - L2 LINE L2 -1 3271 3221 22 0 0 0 chr6 58393713 58393735 -124021507 + AT_rich Low_complexity Low_complexity 1 22 0 383 330 167 27 chr6 58394284 58395026 -124020216 + L2 LINE L2 1830 2675 -639 512 313 100 44 chr6 58395128 58395763 -124019479 + L2 LINE L2 2456 3222 -91 518 288 88 0 chr6 58396021 58396181 -124019061 + MIR3 SINE MIR 24 197 -11 15639 196 51 11 chr6 58396296 58402816 -124012426 - L1PB1 LINE L1 0 6867 6 213 121 0 0 chr6 58402988 58403021 -124012221 + (TA)n Simple_repeat Simple_repeat 1 33 0 912 275 103 39 chr6 58403141 58403501 -124011741 + L2 LINE L2 2126 2508 -806 677 284 60 11 chr6 58404017 58404200 -124011042 + MIR3 SINE MIR 14 205 -3 2072 139 0 0 chr6 58404743 58405044 -124010198 - AluSx SINE Alu -10 302 2 267 190 17 0 chr6 58405528 58405586 -124009656 - MER58 DNA MER1_type 0 2420 2362 1354 182 29 113 chr6 58405588 58406005 -124009237 - MLT1B LTR MaLR -1 389 8 806 218 113 8 chr6 58406011 58406250 -124008992 - MER58 DNA MER1_type -2147 273 10 259 246 0 16 chr6 58407493 58407554 -124007688 - L2 LINE L2 -5 3308 3249 632 277 62 5 chr6 58407637 58407861 -124007381 - L2 LINE L2 -91 3222 2986 2272 172 10 0 chr6 58408173 58408579 -124006663 + MER82 DNA MER2_type 2 411 -242 249 33 0 0 chr6 58408583 58408613 -124006629 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 6486 163 22 3 chr6 58408613 58410396 -124004846 - L1P4 LINE L1 -388 5780 3961 17579 49 0 4 chr6 58410402 58413374 -124001868 - L1PA5 LINE L1 -2 6152 3179 24 0 0 0 chr6 58413381 58413405 -124001837 + AT_rich Low_complexity Low_complexity 1 24 0 1716 56 0 0 chr6 58413405 58413619 -124001623 - L1PA2 LINE L1 -3 6152 5939 22539 80 8 3 chr6 58413619 58416797 -123998445 - L1PA5 LINE L1 -2951 3195 2 10902 201 11 12 chr6 58416797 58417205 -123998037 - L1P4 LINE L1 -2173 3973 3566 2497 64 7 0 chr6 58417205 58417501 -123997741 + AluY SINE Alu 1 298 -13 10902 201 11 12 chr6 58417501 58418881 -123996361 - L1P4 LINE L1 -2580 3566 2184 2099 123 0 3 chr6 58418881 58419203 -123996039 - AluSx SINE Alu 0 321 1 10902 201 11 12 chr6 58419203 58419869 -123995373 - L1P4 LINE L1 -3962 2184 1519 1599 212 7 3 chr6 58420399 58420705 -123994537 - AluJo SINE Alu -5 307 1 2009 149 7 0 chr6 58422913 58423209 -123992033 + AluJb SINE Alu 1 298 -14 2372 103 0 0 chr6 58423476 58423778 -123991464 + AluY SINE Alu 1 302 -9 383 294 58 58 chr6 58423933 58424208 -123991034 + L1ME2 LINE L1 5748 6022 -142 22 0 0 0 chr6 58424247 58424269 -123990973 + AT_rich Low_complexity Low_complexity 1 22 0 2085 125 0 3 chr6 58424735 58425032 -123990210 + AluSx SINE Alu 1 296 -16 905 197 13 44 chr6 58426105 58426333 -123988909 + L1ME1 LINE L1 4786 5006 -1140 225 188 0 0 chr6 58426333 58426381 -123988861 + Alu SINE Alu 255 302 0 4331 127 116 8 chr6 58426381 58427331 -123987911 + L1PA16 LINE L1 5110 6162 -4 2787 242 51 17 chr6 58427343 58427755 -123987487 + L1ME1 LINE L1 5159 5556 -610 2354 60 0 7 chr6 58427755 58428079 -123987163 - AluY SINE Alu 0 322 1 2787 242 51 17 chr6 58428079 58428642 -123986600 + L1ME1 LINE L1 5556 6161 -5 446 260 126 24 chr6 58428655 58429026 -123986216 + L1ME LINE L1 1669 2075 -4465 4198 104 21 2 chr6 58429178 58429800 -123985442 - L1PA13 LINE L1 -2 6161 5528 338 310 33 16 chr6 58429882 58430185 -123985057 + L1ME LINE L1 2711 3018 -3522 968 269 88 50 chr6 58430226 58430707 -123984535 + L1ME LINE L1 3193 3654 -2886 2201 114 7 7 chr6 58430707 58431005 -123984237 + AluSx SINE Alu 1 298 -14 968 269 88 50 chr6 58431005 58431120 -123984122 + L1ME LINE L1 3654 3763 -2777 2088 82 52 36 chr6 58431120 58431425 -123983817 - AluY SINE Alu -1 310 1 968 269 88 50 chr6 58431425 58431771 -123983471 + L1ME LINE L1 3763 4172 -2368 467 344 5 15 chr6 58432425 58432620 -123982622 + L2 LINE L2 3121 3313 0 336 301 84 28 chr6 58433309 58433558 -123981684 + L1ME LINE L1 5711 5973 -542 29 78 0 0 chr6 58433563 58433627 -123981615 + AT_rich Low_complexity Low_complexity 1 64 0 2013 137 3 14 chr6 58433629 58433921 -123981321 + AluSx SINE Alu 1 289 -23 246 74 56 0 chr6 58433921 58433975 -123981267 + (TA)n Simple_repeat Simple_repeat 2 58 0 501 376 53 51 chr6 58434360 58434793 -123980449 + L2 LINE L2 2830 3263 -9 2178 107 7 0 chr6 58435285 58435583 -123979659 - AluSx SINE Alu -12 300 1 22 35 0 0 chr6 58435782 58435811 -123979431 + AT_rich Low_complexity Low_complexity 1 29 0 323 321 36 24 chr6 58438606 58438774 -123976468 - MIR SINE MIR -73 189 20 183 215 28 140 chr6 58438807 58438914 -123976328 + L3 LINE CR1 190 284 -1293 218 167 0 0 chr6 58439094 58439130 -123976112 + (TG)n Simple_repeat Simple_repeat 2 37 0 308 304 75 63 chr6 58439424 58439677 -123975565 + L1MDa LINE L1 963 1218 -5312 2176 124 0 7 chr6 58439687 58439993 -123975249 + AluSx SINE Alu 1 304 -8 34 0 0 0 chr6 58439997 58440031 -123975211 + AT_rich Low_complexity Low_complexity 1 34 0 231 132 19 0 chr6 58440205 58440258 -123974984 + L1PA15 LINE L1 6112 6165 0 727 255 195 8 chr6 58440270 58440670 -123974572 + L1MDa LINE L1 4346 4820 -1720 1470 241 143 54 chr6 58440980 58441602 -123973640 + L1MDa LINE L1 4859 5424 -1140 1813 163 0 3 chr6 58441602 58441885 -123973357 + AluSx SINE Alu 1 282 -30 180 0 0 0 chr6 58441886 58441906 -123973336 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1470 241 143 54 chr6 58441906 58442144 -123973098 + L1MDa LINE L1 5424 5639 -925 1462 173 58 18 chr6 58442144 58442421 -123972821 + AluJo SINE Alu 1 288 -24 1470 241 143 54 chr6 58442421 58443094 -123972148 + L1MDa LINE L1 5639 6518 -46 890 293 99 18 chr6 58443826 58444218 -123971024 - L2 LINE L2 0 3313 2890 531 201 126 75 chr6 58444228 58444402 -123970840 + MER97b DNA MER1_type? 1 183 -870 2596 215 71 15 chr6 58444402 58445131 -123970111 + L1MC4a LINE L1 7021 7790 -18 331 274 0 11 chr6 58445221 58445316 -123969926 - L2 LINE L2 -512 2802 2709 7709 22 1 0 chr6 58445641 58446542 -123968700 + L1PA2 LINE L1 5254 6155 0 666 227 41 137 chr6 58446721 58447086 -123968156 + MER102b DNA MER1_type 4 333 -8 2647 252 39 49 chr6 58448071 58448090 -123967152 - L2 LINE L2 -1 3312 3294 2365 143 51 5 chr6 58448090 58448504 -123966738 - Tigger2a DNA MER2_type 0 434 2 2647 252 39 49 chr6 58448504 58449608 -123965634 - L2 LINE L2 -19 3294 2188 324 0 0 0 chr6 58449608 58449644 -123965598 + (TC)n Simple_repeat Simple_repeat 1 36 0 1428 156 70 33 chr6 58449644 58449914 -123965328 - AluJo SINE Alu -32 280 1 520 248 222 0 chr6 58449914 58450067 -123965175 - L2 LINE L2 -1120 2194 2008 4637 169 54 42 chr6 58450068 58450165 -123965077 - Tigger6a DNA MER2_type -535 1062 968 2345 81 0 7 chr6 58450165 58450460 -123964782 + AluSg SINE Alu 2 294 -16 4637 169 54 42 chr6 58450460 58451409 -123963833 - Tigger6a DNA MER2_type -629 968 3 2327 186 92 5 chr6 58451431 58451878 -123963364 - MER66B LTR ERV1 0 486 1 1696 187 107 73 chr6 58451901 58452323 -123962919 - L2 LINE L2 -1392 1922 1473 2187 200 52 14 chr6 58452323 58452823 -123962419 - Charlie1b DNA MER1_type 0 523 5 1696 187 107 73 chr6 58452823 58452987 -123962255 - L2 LINE L2 -1841 1473 1316 354 192 61 0 chr6 58453050 58453149 -123962093 - MER104 DNA Tc2 -47 133 29 524 245 0 0 chr6 58453212 58453314 -123961928 - L2 LINE L2 -1997 1317 1216 28 48 0 0 chr6 58453420 58453462 -123961780 + AT_rich Low_complexity Low_complexity 1 42 0 2152 164 51 17 chr6 58453589 58454004 -123961238 + MSTB1 LTR MaLR 4 432 0 185 323 48 0 chr6 58455003 58455065 -123960177 - L2 LINE L2 -2 3311 3247 1153 209 0 30 chr6 58455102 58455332 -123959910 - MER58A DNA MER1_type 0 224 2 369 279 22 59 chr6 58456461 58456597 -123958645 - L1ME4a LINE L1 -1 6120 5990 372 256 166 51 chr6 58456735 58457185 -123958057 - L1MC4a LINE L1 -297 5824 5533 190 278 120 53 chr6 58457335 58457468 -123957774 + MIR3 SINE MIR 6 147 -61 3405 72 87 2 chr6 58459684 58460145 -123955097 - LTR3b LTR ERVK 0 500 1 225 286 36 71 chr6 58460145 58460257 -123954985 + MIR SINE MIR 93 200 -62 1578 212 9 118 chr6 58460650 58460728 -123954514 + MLT2B1 LTR ERVL 5 90 -430 1526 199 0 7 chr6 58460728 58461020 -123954222 - AluJo SINE Alu -22 290 1 1578 212 9 118 chr6 58461020 58461475 -123953767 + MLT2B1 LTR ERVL 90 480 -40 319 263 0 42 chr6 58461488 58461583 -123953659 + L1MC4 LINE L1 6610 6700 -1342 1250 118 0 21 chr6 58461583 58461770 -123953472 + AluSg/x SINE Alu 109 291 -19 459 180 45 0 chr6 58462203 58462292 -123952950 - Tigger5 DNA MER2_type 0 2323 2231 249 211 58 0 chr6 58462297 58462349 -123952893 - Tigger5 DNA MER2_type -2268 55 1 2277 125 23 6 chr6 58462695 58463083 -123952159 - L1PA16 LINE L1 -19 6144 5721 884 157 7 0 chr6 58463682 58463835 -123951407 - FRAM SINE Alu -1 175 22 246 32 0 0 chr6 58464299 58464330 -123950912 + (CA)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chr6 58468622 58468649 -123946593 + (T)n Simple_repeat Simple_repeat 1 27 0 278 311 25 50 chr6 58468842 58468961 -123946281 + L2 LINE L2 3189 3304 -9 2103 100 14 3 chr6 58469656 58469947 -123945295 - AluSq SINE Alu -19 294 1 188 323 23 45 chr6 58474296 58474429 -123940813 + L2 LINE L2 2924 3053 -219 224 413 56 19 chr6 58475432 58475592 -123939650 + L2 LINE L2 3107 3272 0 2208 112 0 0 chr6 58476855 58477159 -123938083 + AluSq SINE Alu 1 304 -9 485 344 41 24 chr6 58477875 58478124 -123937118 + MIR SINE MIR 2 250 -12 1404 249 114 22 chr6 58478394 58479022 -123936220 + L1MEd LINE L1 36 758 -5361 1931 120 31 3 chr6 58479207 58479499 -123935743 - AluSq SINE Alu -13 300 1 341 267 155 37 chr6 58481208 58481395 -123933847 + HAL1b LINE L1 1140 1348 0 661 269 123 51 chr6 58481452 58482048 -123933194 - L2 LINE L2 0 3272 2571 670 177 311 0 chr6 58482048 58482212 -123933030 - MER20 DNA MER1_type -3 216 2 661 269 123 51 chr6 58482212 58482332 -123932910 - L2 LINE L2 -701 2571 2461 24 0 0 0 chr6 58482351 58482375 -123932867 + AT_rich Low_complexity Low_complexity 1 24 0 516 245 69 31 chr6 58485095 58485254 -123929988 + MIR SINE MIR 2 166 -96 790 248 85 29 chr6 58485258 58485504 -123929738 + MIR SINE MIR 3 262 0 246 221 116 47 chr6 58485513 58485599 -123929643 + MIR SINE MIR 169 260 -2 372 342 107 26 chr6 58486437 58486709 -123928533 - L2 LINE L2 -468 2846 2553 276 288 12 0 chr6 58487239 58487319 -123927923 - L2 LINE L2 -34 3279 3199 4764 161 21 31 chr6 58487362 58488271 -123926971 + L1MB2 LINE L1 5272 6171 0 284 300 132 29 chr6 58488275 58488548 -123926694 - L2 LINE L2 -414 2900 2600 183 313 0 0 chr6 58488694 58488742 -123926500 - MIR SINE MIR -59 203 156 1767 125 54 24 chr6 58489018 58489313 -123925929 - AluSx SINE Alu -8 304 1 182 253 179 42 chr6 58489371 58489466 -123925776 - L3 LINE CR1 -1210 367 260 2197 52 0 21 chr6 58489515 58489878 -123925364 + AluY SINE Alu 1 357 0 935 225 92 103 chr6 58490104 58490637 -123924605 - Charlie8 DNA MER1_type -1888 529 3 1967 251 24 34 chr6 58491348 58491957 -123923285 + L1ME3 LINE L1 5181 5785 -747 627 253 88 6 chr6 58491959 58492129 -123923113 + MER5A DNA MER1_type 5 188 -1 326 213 156 16 chr6 58492168 58492290 -123922952 + L1ME3 LINE L1 5925 6063 -99 533 207 35 48 chr6 58492330 58492475 -123922767 + L1MC4a LINE L1 5821 5963 -1845 291 260 84 67 chr6 58493101 58493324 -123921918 - MIR SINE MIR -23 239 3 1546 148 101 88 chr6 58493592 58493631 -123921611 + MLT1B LTR MaLR 1 38 -352 2045 102 0 0 chr6 58493631 58493906 -123921336 + AluSg SINE Alu 1 275 -35 1546 148 101 88 chr6 58493906 58494243 -123920999 + MLT1B LTR MaLR 38 382 -8 546 29 0 0 chr6 58494244 58494312 -123920930 + (CA)n Simple_repeat Simple_repeat 2 69 0 1857 118 0 8 chr6 58494529 58494792 -123920450 - AluSx SINE Alu -51 261 1 21 0 0 0 chr6 58495073 58495094 -123920148 + AT_rich Low_complexity Low_complexity 1 21 0 2089 114 7 0 chr6 58495201 58495509 -123919733 + AluSx SINE Alu 1 310 -2 452 182 34 0 chr6 58495884 58495972 -123919270 + L1ME3A LINE L1 6069 6159 -11 392 204 48 39 chr6 58496294 58496397 -123918845 + MIR3 SINE MIR 78 181 -27 2339 69 0 3 chr6 58496990 58497294 -123917948 - AluY SINE Alu -8 303 1 441 238 168 0 chr6 58497538 58497681 -123917561 - MER5A DNA MER1_type -2 187 21 688 164 33 20 chr6 58498129 58498281 -123916961 - MER53 DNA DNA -23 166 13 1909 166 97 49 chr6 58498503 58498948 -123916294 + MLT1C LTR MaLR 1 466 -1 180 0 0 0 chr6 58499224 58499244 -123915998 + (A)n Simple_repeat Simple_repeat 1 20 0 408 297 187 40 chr6 58499683 58500057 -123915185 + L2 LINE L2 2871 3299 -14 677 290 68 12 chr6 58500619 58500957 -123914285 + L1ME4a LINE L1 5568 5924 -197 1679 147 11 11 chr6 58501088 58501374 -123913868 + L1MB3 LINE L1 5884 6169 -14 244 200 67 33 chr6 58501791 58501851 -123913391 - MIR SINE MIR -140 122 61 2137 107 28 0 chr6 58501913 58502203 -123913039 + AluSq SINE Alu 1 298 -15 2248 113 6 0 chr6 58502203 58502514 -123912728 + AluSp SINE Alu 1 313 0 624 210 40 109 chr6 58502642 58502918 -123912324 + Charlie8 DNA MER1_type 4 260 -2157 2155 128 0 3 chr6 58503504 58503802 -123911440 + AluSg SINE Alu 1 297 -13 465 309 20 13 chr6 58504629 58504781 -123910461 + MIR SINE MIR 8 160 -102 239 293 27 0 chr6 58504809 58504884 -123910358 + MER5B DNA MER1_type 100 176 -2 246 248 43 86 chr6 58505804 58505921 -123909321 + L2 LINE L2 3160 3271 -1 741 208 88 0 chr6 58506680 58506839 -123908403 + MER5B DNA MER1_type 1 173 -5 3213 192 27 8 chr6 58506916 58507551 -123907691 + MER82 DNA MER2_type 1 647 -6 232 192 0 68 chr6 58507607 58507680 -123907562 - L1MB8 LINE L1 0 6178 6111 282 310 9 62 chr6 58508241 58508354 -123906888 - MIR SINE MIR -102 160 54 192 125 0 0 chr6 58509017 58509049 -123906193 + (GA)n Simple_repeat Simple_repeat 2 33 0 478 253 0 0 chr6 58509238 58509333 -123905909 + MIR SINE MIR 46 140 -68 537 274 7 7 chr6 58509340 58509475 -123905767 - MIR SINE MIR 0 262 128 24 0 0 0 chr6 58510366 58510390 -123904852 + AT_rich Low_complexity Low_complexity 1 24 0 336 339 117 21 chr6 58514190 58514640 -123900602 - L2 LINE L2 -220 3052 2558 451 209 70 17 chr6 58514951 58515066 -123900176 + L2 LINE L2 3190 3310 -3 232 296 128 15 chr6 58515066 58515269 -123899973 - L2 LINE L2 -1377 1937 1712 203 287 139 0 chr6 58516217 58516318 -123898924 - L2 LINE L2 0 3272 3158 196 341 44 0 chr6 58516387 58516478 -123898764 - MIR SINE MIR -6 256 162 298 239 98 0 chr6 58516484 58516576 -123898666 - MIR SINE MIR 0 262 162 530 311 144 9 chr6 58516585 58516807 -123898435 - MIR SINE MIR -4 258 7 205 241 190 25 chr6 58516940 58517019 -123898223 + L2 LINE L2 3210 3301 -12 334 97 0 32 chr6 58517330 58517392 -123897850 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 622 301 86 15 chr6 58518233 58518559 -123896683 + LTR33 LTR ERVL 170 518 -3 1974 144 0 55 chr6 58518645 58518972 -123896270 - AluSx SINE Alu -3 309 1 254 301 130 20 chr6 58520549 58520695 -123894547 + MIR3 SINE MIR 16 177 -31 239 109 0 43 chr6 58521424 58521470 -123893772 - MER103 DNA DNA -69 97 54 364 304 161 22 chr6 58521749 58521979 -123893263 + MIR SINE MIR 1 262 0 2297 108 16 0 chr6 58522346 58522653 -123892589 + AluSx SINE Alu 1 312 0 913 151 29 10 chr6 58522870 58523116 -123892126 - AluJb SINE Alu -12 300 2 220 297 0 33 chr6 58523317 58523408 -123891834 + C-rich Low_complexity Low_complexity 3 90 0 504 292 60 53 chr6 58523479 58523760 -123891482 - L1ME4a LINE L1 -3 6118 5836 2133 150 0 3 chr6 58524372 58524685 -123890557 - AluSx SINE Alu 0 312 1 2344 117 0 0 chr6 58524749 58525048 -123890194 + AluSx SINE Alu 1 299 -13 1932 109 8 0 chr6 58525049 58525306 -123889936 + AluSq SINE Alu 35 293 -20 489 264 98 43 chr6 58525448 58525683 -123889559 - MIR SINE MIR -6 256 9 189 351 169 13 chr6 58526442 58526519 -123888723 + L2 LINE L2 3098 3186 -86 637 133 33 25 chr6 58526562 58526682 -123888560 + L1MB2 LINE L1 6051 6171 0 412 283 0 0 chr6 58527391 58527490 -123887752 + MIR SINE MIR 47 145 -117 * 522 355 53 0 chr6 58527480 58527708 -123887534 + MIR SINE MIR 7 246 -16 184 336 65 47 chr6 58527758 58527865 -123887377 + L2 LINE L2 2992 3100 -172 419 284 96 46 chr6 58528005 58528062 -123887180 - L1MC4a LINE L1 -8 6113 6060 2330 95 6 19 chr6 58528062 58528379 -123886863 + AluSq SINE Alu 1 313 0 419 284 96 46 chr6 58528379 58528687 -123886555 - L1MC4a LINE L1 -61 6060 5730 2110 158 42 89 chr6 58528973 58529378 -123885864 + L1MB7 LINE L1 5618 5990 -194 1874 151 0 47 chr6 58529378 58529581 -123885661 - AluSx SINE Alu -4 308 124 2561 51 3 16 chr6 58529581 58529892 -123885350 - AluY SINE Alu -4 307 1 1874 151 0 47 chr6 58529892 58530006 -123885236 - AluSx SINE Alu -188 124 6 2110 158 42 89 chr6 58530006 58530175 -123885067 + L1MB7 LINE L1 5990 6165 -19 218 383 187 7 chr6 58530234 58530534 -123884708 - L2 LINE L2 -3 3269 2916 253 275 35 106 chr6 58530612 58530667 -123884575 - L2 LINE L2 -9 3304 3247 1910 85 19 0 chr6 58530667 58530927 -123884315 - L1PA7 LINE L1 -3 6151 5887 253 275 35 106 chr6 58530927 58531013 -123884229 - L2 LINE L2 -66 3247 3173 1486 233 45 45 chr6 58531068 58531541 -123883701 + L1MC4a LINE L1 5574 6049 -1759 2204 64 86 0 chr6 58531541 58531821 -123883421 + AluY SINE Alu 1 304 -7 1486 233 45 45 chr6 58531821 58531931 -123883311 + L1MC4a LINE L1 6048 6157 -1651 274 352 99 23 chr6 58532458 58532893 -123882349 + L2 LINE L2 2804 3271 -1 269 375 47 8 chr6 58535058 58535186 -123880056 + L2 LINE L2 3175 3307 -6 264 296 52 37 chr6 58536154 58536289 -123878953 - MIR3 SINE MIR -65 143 7 424 119 148 69 chr6 58537175 58537216 -123878026 + MLT1A2 LTR MaLR 260 296 -78 2193 122 16 0 chr6 58537216 58537519 -123877723 + AluSx SINE Alu 1 308 -4 424 119 148 69 chr6 58537519 58537578 -123877664 + MLT1A2 LTR MaLR 296 368 -6 259 295 62 54 chr6 58537835 58537947 -123877295 + L2 LINE L2 3199 3311 -2 365 322 105 0 chr6 58538054 58538197 -123877045 + MIR3 SINE MIR 37 194 -14 196 269 58 19 chr6 58539986 58540038 -123875204 - MIR SINE MIR -17 245 192 2205 106 3 0 chr6 58540425 58540708 -123874534 + AluSx SINE Alu 1 284 -28 276 235 25 12 chr6 58543283 58543364 -123871878 - MIR SINE MIR -64 198 117 22 35 0 0 chr6 58545023 58545052 -123870190 + GC_rich Low_complexity Low_complexity 1 29 0 181 106 21 43 chr6 58545101 58545148 -123870094 + (CCCG)n Simple_repeat Simple_repeat 2 47 0 287 195 18 35 chr6 58545168 58545281 -123869961 + C-rich Low_complexity Low_complexity 2 112 0 253 255 167 10 chr6 58545712 58545814 -123869428 - L2 LINE L2 -14 3299 3182 1563 130 21 13 chr6 58546564 58546803 -123868439 - AluSx SINE Alu -17 295 55 1965 109 51 0 chr6 58546804 58547079 -123868163 - AluSq SINE Alu -24 289 1 1009 167 29 52 chr6 58547082 58547292 -123867950 - Tigger3(Golem) DNA MER2_type -2820 209 5 2591 177 57 17 chr6 58547295 58547826 -123867416 + MLT1F1 LTR MaLR 16 567 0 235 361 82 43 chr6 58548023 58548147 -123867095 - L2 LINE L2 -453 2861 2743 2340 103 3 0 chr6 58548147 58548448 -123866794 - AluSp SINE Alu -10 303 2 235 361 82 43 chr6 58548448 58548578 -123866664 - L2 LINE L2 -571 2743 2597 1944 146 17 7 chr6 58548583 58548877 -123866365 - AluJo SINE Alu -15 297 1 236 347 59 31 chr6 58549394 58549714 -123865528 - L2 LINE L2 -1466 1848 1520 185 336 67 19 chr6 58549845 58549949 -123865293 - MIR3 SINE MIR -94 114 6 1909 153 58 7 chr6 58550053 58550348 -123864894 - AluSx SINE Alu -2 310 1 193 338 55 41 chr6 58550572 58550717 -123864525 + L2 LINE L2 3165 3311 -2 1358 251 106 33 chr6 58550843 58551352 -123863890 - MLT1L LTR MaLR -67 548 3 28 29 0 0 chr6 58551635 58551670 -123863572 + AT_rich Low_complexity Low_complexity 1 35 0 300 193 44 97 chr6 58551736 58551850 -123863392 + MER97c DNA MER1_type? 1 108 -982 1279 150 82 0 chr6 58551850 58552083 -123863159 + L1MD3 LINE L1 7735 7986 -9 2012 207 70 30 chr6 58552083 58552290 -123862952 + MER97a DNA MER1_type? 90 287 -607 1730 163 3 48 chr6 58552290 58552603 -123862639 + AluJo SINE Alu 1 299 -13 2012 207 70 30 chr6 58552603 58552936 -123862306 + MER97a DNA MER1_type? 287 652 -242 279 0 0 0 chr6 58552948 58552979 -123862263 + (TG)n Simple_repeat Simple_repeat 2 32 0 777 167 23 15 chr6 58553033 58553165 -123862077 + FLAM_C SINE Alu 1 133 0 1943 128 24 14 chr6 58553243 58553539 -123861703 + AluSx SINE Alu 1 299 -13 215 309 175 24 chr6 58553541 58553667 -123861575 - MIR3 SINE MIR -36 172 28 187 276 62 62 chr6 58553702 58553847 -123861395 - MIR3 SINE MIR -63 145 1 207 0 0 0 chr6 58554084 58554107 -123861135 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2093 113 0 0 chr6 58554108 58554382 -123860860 - AluSx SINE Alu -38 274 1 2011 153 3 10 chr6 58554455 58554769 -123860473 - AluJb SINE Alu 0 312 1 457 224 13 0 chr6 58555251 58555407 -123859835 + (TGGA)n Simple_repeat Simple_repeat 3 160 0 268 123 0 88 chr6 58555617 58555674 -123859568 + L2 LINE L2 3262 3313 0 253 216 22 60 chr6 58556164 58556298 -123858944 + GA-rich Low_complexity Low_complexity 1 129 0 363 301 32 16 chr6 58557547 58557616 -123857626 - MIR SINE MIR -75 187 121 1948 122 59 0 chr6 58557616 58557902 -123857340 + AluSx SINE Alu 1 303 -9 2221 106 0 52 chr6 58557902 58558231 -123857011 + AluSq SINE Alu 1 312 -1 363 301 32 16 chr6 58558231 58558283 -123856959 - MIR SINE MIR -140 122 63 372 298 46 26 chr6 58558333 58558484 -123856758 + MIR3 SINE MIR 26 179 -29 685 200 46 23 chr6 58559237 58559412 -123855830 + MER104 DNA MER2_type 2 180 0 2054 148 3 0 chr6 58559597 58559901 -123855341 + AluSx SINE Alu 1 305 -7 1211 229 90 3 chr6 58560148 58560449 -123854793 - MLT1E2 LTR MaLR 0 626 300 586 170 0 27 chr6 58560474 58560586 -123854656 - LTR56 LTR ERV1 -10 435 327 958 151 24 12 chr6 58560720 58560886 -123854356 - MLT1E2 LTR MaLR -337 168 1 318 281 49 0 chr6 58560886 58560968 -123854274 + MLT1L LTR MaLR 204 289 -326 674 267 71 51 chr6 58560997 58561252 -123853990 + MLT1L LTR MaLR 348 607 -8 1407 175 35 0 chr6 58561811 58562039 -123853203 - AluJb SINE Alu -18 294 59 518 262 151 6 chr6 58562147 58562319 -123852923 - MIR SINE MIR -46 216 20 1847 230 21 18 chr6 58562442 58562877 -123852365 + MER63B DNA MER1_type 1 436 0 1435 207 88 6 chr6 58564372 58564724 -123850518 + L1ME3A LINE L1 5790 6170 0 245 302 0 0 chr6 58564857 58564910 -123850332 + MIR SINE MIR 30 82 -126 764 251 163 9 chr6 58565140 58565355 -123849887 + MIR SINE MIR 10 257 -5 274 276 184 0 chr6 58565376 58565474 -123849768 - MIR SINE MIR -108 154 39 210 71 0 0 chr6 58565537 58565565 -123849677 + (TAA)n Simple_repeat Simple_repeat 3 30 0 530 315 35 10 chr6 58565588 58565785 -123849457 - MIR SINE MIR -48 214 13 218 285 115 46 chr6 58566998 58567128 -123848114 - MER5A DNA MER1_type 0 189 51 2269 116 0 3 chr6 58567301 58567602 -123847640 - AluSx SINE Alu -12 300 1 1577 85 0 0 chr6 58567612 58567811 -123847431 - AluSg/x SINE Alu -13 299 101 1156 63 0 28 chr6 58567811 58567953 -123847289 - AluSc SINE Alu -171 138 1 286 165 63 25 chr6 58568008 58568087 -123847155 + L1ME4a LINE L1 6026 6107 -14 21 71 0 0 chr6 58568703 58568745 -123846497 + AT_rich Low_complexity Low_complexity 1 42 0 7691 62 0 1 chr6 58568888 58570008 -123845234 + L1PA8 LINE L1 5043 6172 0 939 234 41 29 chr6 58571934 58572178 -123843064 + MIR SINE MIR 5 251 -11 248 282 43 68 chr6 58572211 58572233 -123843009 - L1MA10 LINE L1 -1 6333 6312 1233 236 23 0 chr6 58572233 58572492 -123842750 - L1ME1 LINE L1 -5 6161 5897 557 217 0 18 chr6 58573936 58574102 -123841140 + C-rich Low_complexity Low_complexity 4 166 0 1856 146 0 0 chr6 58574114 58574382 -123840860 - AluSx SINE Alu -12 300 33 310 220 0 44 chr6 58575571 58575662 -123839580 - MLT1E LTR MaLR 0 567 481 8899 125 11 0 chr6 58575681 58577715 -123837527 - L1PA10 LINE L1 -5 6163 4079 1255 217 59 47 chr6 58577715 58578186 -123837056 - MLT1E LTR MaLR -53 540 1 258 235 126 84 chr6 58578196 58578315 -123836927 - L2 LINE L2 -19 3294 3171 316 341 65 8 chr6 58579031 58579154 -123836088 - L2 LINE L2 0 3272 3143 709 165 8 8 chr6 58579172 58579293 -123835949 + MSTD LTR MaLR 1 121 -275 1934 137 0 51 chr6 58579523 58579837 -123835405 - AluSq SINE Alu -15 298 1 23 33 0 0 chr6 58580297 58580327 -123834915 + AT_rich Low_complexity Low_complexity 1 30 0 863 161 0 0 chr6 58580327 58580445 -123834797 - FLAM_C SINE Alu -15 118 1 238 282 14 28 chr6 58580950 58581021 -123834221 + L2 LINE L2 3244 3313 0 1822 44 0 0 chr6 58582258 58582464 -123832778 + L1PA3 LINE L1 5945 6150 -5 2324 96 0 0 chr6 58582522 58582823 -123832419 - AluSg SINE Alu -4 306 6 2249 102 14 0 chr6 58583021 58583314 -123831928 + AluSx SINE Alu 2 298 -14 384 334 138 60 chr6 58583316 58583714 -123831528 - L2 LINE L2 -22 3250 2822 791 185 217 32 chr6 58584166 58584355 -123830887 - MER58A DNA MER1_type 0 224 1 229 269 0 0 chr6 58584370 58584422 -123830820 + L2 LINE L2 3261 3312 -1 225 364 30 36 chr6 58584709 58584874 -123830368 - MIR SINE MIR -81 181 18 330 306 55 32 chr6 58585677 58585896 -123829346 + L1MC4a LINE L1 5681 5904 -1904 237 279 84 55 chr6 58585716 58585953 -123829289 + L1MB8 LINE L1 5725 5968 -210 * 2267 105 3 0 chr6 58586106 58586410 -123828832 - AluSx SINE Alu -3 309 5 22 35 0 0 chr6 58586461 58586490 -123828752 + AT_rich Low_complexity Low_complexity 1 29 0 229 280 30 55 chr6 58586905 58587105 -123828137 + L1MB2 LINE L1 4464 4658 -1488 2189 111 0 7 chr6 58587349 58587647 -123827595 - AluSx SINE Alu -16 296 1 1019 59 0 15 chr6 58587654 58587666 -123827576 + L1P LINE L1 5068 5079 -1067 407 102 34 0 chr6 58587666 58587725 -123827517 - L1PA6 LINE L1 -10 6144 6084 1019 59 0 15 chr6 58587725 58587847 -123827395 + L1P LINE L1 5079 5200 -946 903 252 181 4 chr6 58588257 58588766 -123826476 + L2 LINE L2 2684 3313 0 266 233 33 67 chr6 58589256 58589384 -123825858 + L1ME4a LINE L1 5264 5388 -2420 1445 199 16 33 chr6 58589384 58589690 -123825552 + AluJo SINE Alu 1 301 -11 266 233 33 67 chr6 58589690 58589711 -123825531 + L1ME4a LINE L1 5388 5408 -2400 5682 158 15 10 chr6 58589753 58590414 -123824828 + L1MB2 LINE L1 4771 5427 -744 552 125 0 0 chr6 58590414 58590494 -123824748 - MADE1 DNA Mariner 0 80 1 5682 158 15 10 chr6 58590494 58591212 -123824030 + L1MB2 LINE L1 5427 6161 -10 30 0 0 0 chr6 58591609 58591639 -123823603 + AT_rich Low_complexity Low_complexity 1 30 0 471 18 0 0 chr6 58591699 58591755 -123823487 + (CA)n Simple_repeat Simple_repeat 1 56 0 443 289 90 48 chr6 58591862 58592126 -123823116 + L1ME4a LINE L1 5519 5771 -350 2236 103 0 14 chr6 58592126 58592418 -123822824 + AluSx SINE Alu 1 288 -24 443 289 90 48 chr6 58592418 58592474 -123822768 + L1ME4a LINE L1 5771 5823 -298 6271 101 4 45 chr6 58592474 58592919 -123822323 + L1PA13 LINE L1 4874 5336 -827 2429 54 20 0 chr6 58592919 58593213 -123822029 + AluY SINE Alu 1 300 -11 6271 101 4 45 chr6 58593213 58593802 -123821440 + L1PA13 LINE L1 5336 5872 -291 2452 74 0 0 chr6 58593802 58594098 -123821144 + AluSg SINE Alu 1 296 -14 6271 101 4 45 chr6 58594098 58594375 -123820867 + L1PA13 LINE L1 5872 6159 -4 443 289 90 48 chr6 58594375 58594631 -123820611 + L1ME4a LINE L1 5823 6120 -1 412 188 76 91 chr6 58595285 58595417 -123819825 + Charlie7 DNA MER1_type 2415 2545 -67 351 0 0 0 chr6 58595417 58595456 -123819786 + (CA)n Simple_repeat Simple_repeat 2 40 0 412 188 76 91 chr6 58595456 58595520 -123819722 + Charlie7 DNA MER1_type 2545 2608 -4 2065 131 14 0 chr6 58596564 58596861 -123818381 + AluSx SINE Alu 1 301 -11 285 283 20 40 chr6 58597406 58597505 -123817737 + L3b LINE CR1 1391 1487 -96 294 219 0 16 chr6 58597755 58597819 -123817423 - MER5B DNA MER1_type 0 178 116 2714 205 16 32 chr6 58597819 58598091 -123817151 + L1M4 LINE L1 4439 4714 -1432 1958 109 40 0 chr6 58598091 58598367 -123816875 + AluSx SINE Alu 5 291 -21 2714 205 16 32 chr6 58598367 58598724 -123816518 + L1M4 LINE L1 4714 5058 -1088 312 340 21 0 chr6 58598752 58598849 -123816393 + MER5B DNA MER1_type 50 148 -30 368 250 40 14 chr6 58600245 58600393 -123814849 + L1ME1 LINE L1 35 186 -6210 5145 228 56 53 chr6 58600412 58600507 -123814735 + L1ME1 LINE L1 3597 3690 -2525 1356 213 51 11 chr6 58600507 58600662 -123814580 - AluJo SINE Alu -28 284 112 279 0 0 0 chr6 58600662 58600693 -123814549 + (TG)n Simple_repeat Simple_repeat 2 32 0 1356 213 51 11 chr6 58600693 58600810 -123814432 - AluJo SINE Alu -200 112 1 5145 228 56 53 chr6 58600810 58601161 -123814081 + L1ME1 LINE L1 3690 4039 -2176 1989 138 42 30 chr6 58601161 58601494 -123813748 - MER1B DNA MER1_type 0 337 1 5145 228 56 53 chr6 58601494 58602835 -123812407 + L1ME1 LINE L1 4039 5390 -825 2112 192 57 22 chr6 58602843 58603102 -123812140 + L1MDa LINE L1 15 298 -6242 246 32 0 0 chr6 58603102 58603133 -123812109 + (CA)n Simple_repeat Simple_repeat 2 32 0 2112 192 57 22 chr6 58603133 58603326 -123811916 + L1MDa LINE L1 298 483 -6057 559 181 0 26 chr6 58603816 58603831 -123811411 + L1MA7 LINE L1 6164 6178 -113 2282 98 0 7 chr6 58603831 58604128 -123811114 - AluSx SINE Alu -17 295 1 559 181 0 26 chr6 58604128 58604267 -123810975 + L1MA7 LINE L1 6178 6289 -2 961 212 65 21 chr6 58604310 58604701 -123810541 - L1ME2 LINE L1 -47 6119 5689 258 174 47 58 chr6 58604703 58604789 -123810453 + L1ME LINE L1 5813 5897 -224 2625 196 57 117 chr6 58604897 58605809 -123809433 + L1ME1 LINE L1 5379 6235 0 2184 96 3 0 chr6 58606419 58606701 -123808541 - AluSp SINE Alu 0 313 31 2576 104 27 77 chr6 58606701 58607111 -123808131 - LTR12 LTR ERV1 -125 2313 1884 2058 75 4 19 chr6 58607111 58607379 -123807863 - AluY SINE Alu -16 295 32 2576 104 27 77 chr6 58607379 58607465 -123807777 - LTR12 LTR ERV1 -554 1884 1 328 224 84 19 chr6 58607482 58607589 -123807653 + MIR SINE MIR 76 189 -73 1659 141 53 7 chr6 58607603 58607887 -123807355 + AluJo SINE Alu 13 309 -3 525 303 13 7 chr6 58608842 58608997 -123806245 - MIR SINE MIR -71 191 36 2161 128 23 0 chr6 58609461 58609813 -123805429 + L1MA9 LINE L1 5953 6312 0 195 42 0 0 chr6 58610227 58610251 -123804991 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 704 197 5 83 chr6 58610606 58610799 -123804443 - MER5B DNA MER1_type 0 178 1 289 266 10 78 chr6 58611853 58612045 -123803197 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 480 225 160 100 chr6 58612595 58613044 -123802198 + MLT1K LTR MaLR 1 476 0 21 0 0 0 chr6 58613204 58613225 -123802017 + AT_rich Low_complexity Low_complexity 1 21 0 2034 110 90 16 chr6 58613310 58613620 -123801622 + THE1B LTR MaLR 1 333 -31 1001 185 15 46 chr6 58613945 58614007 -123801235 - MER5A DNA MER1_type 0 189 127 1599 137 103 15 chr6 58614007 58614295 -123800947 + AluSx SINE Alu 1 311 0 1001 185 15 46 chr6 58614295 58614426 -123800816 - MER5A DNA MER1_type -62 127 1 1078 229 59 16 chr6 58614904 58615157 -123800085 + MER45C DNA AcHobo 39 302 -651 531 294 56 0 chr6 58615204 58615364 -123799878 + MER45C DNA AcHobo 431 599 -354 1872 144 28 7 chr6 58615829 58616114 -123799128 + AluJb SINE Alu 1 291 -21 217 196 20 20 chr6 58616863 58616914 -123798328 + GA-rich Low_complexity Low_complexity 1 51 0 361 309 0 0 chr6 58618562 58618659 -123796583 - L2 LINE L2 -1 3271 3175 1945 196 29 24 chr6 58619140 58619558 -123795684 + LTR52 LTR ERVL 1 420 -1 1751 186 0 3 chr6 58619710 58620001 -123795241 + AluJo SINE Alu 5 294 -18 1093 50 30 15 chr6 58620004 58620213 -123795029 + (GAAA)n Simple_repeat Simple_repeat 1 212 0 579 221 23 101 chr6 58620363 58620621 -123794621 + L1MDb LINE L1 788 1025 -5384 269 183 50 0 chr6 58620588 58620648 -123794594 + L1ME1 LINE L1 6346 6408 -18 * 390 269 136 39 chr6 58621187 58621569 -123793673 + MLT1J2 LTR MaLR 1 407 -2 434 293 0 21 chr6 58621782 58621922 -123793320 - L3 LINE CR1 -16 1561 1425 749 205 73 0 chr6 58622511 58622716 -123792526 + L1MD1 LINE L1 5114 5333 -813 1997 151 123 3 chr6 58622719 58623077 -123792165 + MSTA LTR MaLR 1 401 -27 6859 59 21 53 chr6 58623095 58625079 -123790163 - SVA Other Other -520 1383 2 386 0 0 85 chr6 58625084 58625143 -123790099 + (GGGAGA)n Simple_repeat Simple_repeat 1 54 0 964 100 0 15 chr6 58625144 58625274 -123789968 - AluSg/x SINE Alu -29 283 156 301 98 0 0 chr6 58625274 58625315 -123789927 + MSTA LTR MaLR 388 428 0 513 131 162 0 chr6 58625315 58625414 -123789828 + L1MD1 LINE L1 5332 5446 -796 279 0 0 0 chr6 58626100 58626131 -123789111 + (CA)n Simple_repeat Simple_repeat 2 32 0 4249 151 49 18 chr6 58626140 58626930 -123788312 + L1MD1 LINE L1 5428 6242 0 2031 105 13 33 chr6 58626939 58627243 -123787999 + AluSq SINE Alu 1 298 -15 472 224 26 0 chr6 58627251 58627367 -123787875 + MER5B DNA MER1_type 60 178 0 2159 106 0 35 chr6 58627623 58627935 -123787307 - AluSx SINE Alu -11 301 1 1275 164 65 9 chr6 58628015 58628246 -123786996 + Tigger7 DNA MER2_type 23 266 -284 517 153 41 41 chr6 58628245 58628343 -123786899 + Tigger7 DNA MER2_type 2390 2487 0 * 1840 146 7 29 chr6 58628513 58628821 -123786421 - AluJb SINE Alu -11 301 1 813 182 0 15 chr6 58630163 58630295 -123784947 + FRAM SINE Alu 24 153 -23 2331 98 0 3 chr6 58630768 58631074 -123784168 + AluSx SINE Alu 1 305 -7 757 186 101 21 chr6 58631082 58631270 -123783972 + MIR SINE MIR 57 259 -3 1454 66 10 30 chr6 58631593 58631791 -123783451 - MER107 DNA MER1_type -1 196 3 285 237 10 41 chr6 58633822 58633919 -123781323 - MIR SINE MIR -119 143 50 290 196 0 0 chr6 58634261 58634307 -123780935 - MER81 DNA DNA -29 85 40 294 231 0 0 chr6 58634308 58634360 -123780882 - MER81 DNA DNA -30 84 33 274 208 0 0 chr6 58634364 58634412 -123780830 - MER81 DNA DNA -40 74 27 * 310 157 124 79 chr6 58634380 58634469 -123780773 - MER81 DNA DNA -15 99 7 1346 179 168 31 chr6 58636983 58637335 -123777907 + Charlie4a DNA MER1_type 109 508 0 253 244 116 0 chr6 58637619 58637705 -123777537 - MIR3 SINE MIR -28 180 85 283 244 61 46 chr6 58638126 58638257 -123776985 + L3 LINE CR1 1239 1371 -206 1672 135 18 29 chr6 58638258 58638532 -123776710 + AluJb SINE Alu 23 293 -19 189 235 15 59 chr6 58638762 58638830 -123776412 + MIR SINE MIR 86 150 -112 259 282 64 27 chr6 58640256 58640366 -123774876 - L2 LINE L2 0 3313 3200 342 302 122 61 chr6 58640643 58641242 -123774000 + L2 LINE L2 2365 3002 -270 2378 159 95 9 chr6 58641245 58641666 -123773576 + LTR32 LTR ERVL 15 471 0 804 181 128 0 chr6 58642069 58642257 -123772985 - MIR SINE MIR -6 256 45 609 188 33 77 chr6 58642536 58642717 -123772525 + MIR SINE MIR 80 252 -10 1915 126 53 20 chr6 58642984 58643286 -123771956 - AluSx SINE Alu 0 312 1 1769 184 3 3 chr6 58644363 58644656 -123770586 - AluJb SINE Alu -19 293 1 2158 136 88 13 chr6 58644716 58645112 -123770130 - MSTA LTR MaLR 0 428 3 495 33 0 0 chr6 58646414 58646475 -123768767 + (TG)n Simple_repeat Simple_repeat 1 61 0 377 286 168 25 chr6 58646681 58646884 -123768358 + MIR SINE MIR 5 236 -26 221 357 87 0 chr6 58648032 58648158 -123767084 - L3 LINE CR1 -3 1574 1438 238 275 14 0 chr6 58648161 58648230 -123767012 - L2 LINE L2 -7 3306 3237 286 351 45 7 chr6 58648341 58648495 -123766747 - L2 LINE L2 -234 3038 2879 261 229 62 21 chr6 58648536 58648632 -123766610 - L2 LINE L2 -557 2757 2658 867 128 0 0 chr6 58648681 58648822 -123766420 + (TA)n Simple_repeat Simple_repeat 2 142 0 307 290 57 57 chr6 58648837 58648961 -123766281 - MIR SINE MIR -62 146 23 485 101 40 0 chr6 58648962 58649061 -123766181 + (TG)n Simple_repeat Simple_repeat 1 103 0 357 275 10 20 chr6 58649064 58649187 -123766055 - MER5B DNA MER1_type 0 178 72 240 360 45 0 chr6 58649173 58649262 -123765980 + L2 LINE L2 3157 3249 -23 * 22 35 0 0 chr6 58650700 58650729 -123764513 + AT_rich Low_complexity Low_complexity 1 29 0 2243 131 0 0 chr6 58651281 58651612 -123763630 + AluSx SINE Alu 1 312 0 2223 112 6 10 chr6 58651703 58652017 -123763225 - AluSp SINE Alu 0 313 1 798 257 153 37 chr6 58652820 58653311 -123761931 + L1ME4a LINE L1 5558 6105 -16 2136 130 30 0 chr6 58653415 58653716 -123761526 + AluSx SINE Alu 1 310 -2 425 341 85 0 chr6 58654931 58655095 -123760147 + MIR3 SINE MIR 23 200 -8 350 300 21 93 chr6 58655218 58655455 -123759787 + HsTC2 DNA Tc2 658 877 -1021 554 284 80 12 chr6 58656201 58656481 -123758761 + L1ME LINE L1 5469 5764 -357 361 253 73 27 chr6 58656492 58656642 -123758600 - L1ME4a LINE L1 -252 5869 5713 2262 105 0 32 chr6 58657102 58657415 -123757827 + AluSg SINE Alu 1 303 -7 2300 100 7 3 chr6 58657432 58657742 -123757500 + AluSx SINE Alu 1 311 -1 656 119 0 0 chr6 58658598 58658682 -123756560 + AluJ/FLAM SINE Alu 2 85 -227 378 250 34 11 chr6 58659143 58659231 -123756011 + MIR SINE MIR 33 122 -86 494 269 39 120 chr6 58659661 58659895 -123755347 + MIR SINE MIR 22 236 -26 829 243 41 129 chr6 58661880 58662193 -123753049 + MLT1H1 LTR MaLR 14 342 -253 * 2765 146 45 5 chr6 58662187 58662631 -123752611 + LTR32 LTR ERVL 10 471 0 1691 215 92 82 chr6 58662919 58663324 -123751918 + L1MC5 LINE L1 6707 7106 -855 1953 152 30 0 chr6 58663324 58663621 -123751621 - AluSx SINE Alu -6 306 1 1691 215 92 82 chr6 58663621 58663705 -123751537 + L1MC5 LINE L1 7106 7188 -773 2426 72 0 20 chr6 58663705 58664010 -123751232 + AluSg SINE Alu 1 299 -11 1691 215 92 82 chr6 58664010 58664211 -123751031 + L1MC5 LINE L1 7188 7405 -556 316 239 54 0 chr6 58664872 58664964 -123750278 + L1MC5 LINE L1 7819 7915 -46 273 57 0 0 chr6 58665816 58665851 -123749391 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 629 254 166 0 chr6 58666000 58666217 -123749025 - LTR50 LTR ERVL -8 787 535 189 0 0 0 chr6 58666313 58666334 -123748908 + (GA)n Simple_repeat Simple_repeat 1 21 0 275 299 139 7 chr6 58666745 58666882 -123748360 + MIR SINE MIR 53 207 -55 24 32 0 0 chr6 58667675 58667706 -123747536 + AT_rich Low_complexity Low_complexity 1 31 0 310 284 0 0 chr6 58668183 58668250 -123746992 - MIR SINE MIR -86 122 56 21 36 0 0 chr6 58668305 58668333 -123746909 + AT_rich Low_complexity Low_complexity 1 28 0 1687 191 64 9 chr6 58669087 58669193 -123746049 + MER7A DNA MER2_type 1 100 -2938 2270 108 3 0 chr6 58669193 58669488 -123745754 - AluSp SINE Alu -17 296 1 1687 191 64 9 chr6 58669488 58669711 -123745531 + MER7A DNA MER2_type 100 346 0 24 53 0 0 chr6 58670359 58670397 -123744845 + AT_rich Low_complexity Low_complexity 1 38 0 1695 175 0 7 chr6 58670405 58670697 -123744545 - AluJo SINE Alu -16 296 7 307 59 20 20 chr6 58671528 58671579 -123743663 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 1217 186 12 59 chr6 58672796 58673049 -123742193 + AluJb SINE Alu 1 241 -71 4380 81 24 0 chr6 58673049 58673590 -123741652 + MER41A LTR ERV1 1 554 0 4163 116 40 15 chr6 58673673 58674279 -123740963 + MER41A-int LTR ERV1 1 621 -5325 * 8960 120 21 43 chr6 58674266 58676552 -123738690 + MER41A-int LTR ERV1 2606 4227 -788 752 91 0 27 chr6 58676580 58676690 -123738552 + MER41A LTR ERV1 92 198 -356 6416 82 24 9 chr6 58676693 58676775 -123738467 + MER41A-int LTR ERV1 5071 5150 -796 2181 119 3 0 chr6 58676775 58677070 -123738172 - AluSx SINE Alu -16 296 1 6416 82 24 9 chr6 58677070 58677846 -123737396 + MER41A-int LTR ERV1 5150 5942 -4 4273 86 30 0 chr6 58677850 58678386 -123736856 + MER41A LTR ERV1 3 554 0 420 98 0 0 chr6 58678388 58678439 -123736803 + AluJb SINE Alu 240 290 -22 191 211 26 0 chr6 58678619 58678657 -123736585 - MER5B DNA MER1_type -18 160 122 338 250 115 29 chr6 58678719 58678823 -123736419 + MER5B DNA MER1_type 63 175 -3 260 282 118 0 chr6 58678997 58679107 -123736135 + L1MC5 LINE L1 7292 7414 -547 302 287 11 0 chr6 58679142 58679229 -123736013 + MER5A DNA MER1_type 18 105 -84 341 242 33 8 chr6 58679355 58679475 -123735767 + L1MC5 LINE L1 7475 7597 -364 233 156 0 0 chr6 58679477 58679506 -123735736 - Tigger5 DNA MER2_type 0 2323 2295 2083 47 8 0 chr6 58679506 58679760 -123735482 - MER41A LTR ERV1 0 554 299 3142 184 28 0 chr6 58679925 58680431 -123734811 + MLT2B1 LTR ERVL 1 520 0 428 286 76 17 chr6 58680949 58681068 -123734174 - L2 LINE L2 0 3272 3147 401 324 92 14 chr6 58681660 58681867 -123733375 + MIR SINE MIR 40 262 0 2260 128 0 3 chr6 58682960 58683273 -123731969 - AluSx SINE Alu 0 312 1 1296 236 74 85 chr6 58683669 58684223 -123731019 - MLT1H1 LTR MaLR 0 555 8 1642 128 15 47 chr6 58685684 58685958 -123729284 + AluJb SINE Alu 16 280 -32 2119 138 30 41 chr6 58687747 58687964 -123727278 + MLT1A1 LTR MaLR 1 214 -151 2105 125 75 31 chr6 58687964 58688323 -123726919 + THE1C LTR MaLR 1 375 0 2119 138 30 41 chr6 58688323 58688474 -123726768 + MLT1A1 LTR MaLR 214 365 0 412 241 51 77 chr6 58688945 58689000 -123726242 + L2 LINE L2 3047 3102 -211 2252 132 48 28 chr6 58689000 58689357 -123725885 + THE1B LTR MaLR 1 364 0 412 241 51 77 chr6 58689357 58689575 -123725667 + L2 LINE L2 3102 3313 0 * 507 315 27 7 chr6 58689568 58689717 -123725525 + MIR3 SINE MIR 8 159 -49 2457 70 0 0 chr6 58690619 58690920 -123724322 + AluY SINE Alu 1 301 -10 838 247 99 34 chr6 58691316 58691348 -123723894 - L1ME1 LINE L1 -11 6159 6131 1696 91 0 5 chr6 58691348 58691568 -123723674 + AluSq SINE Alu 79 297 -16 838 247 99 34 chr6 58691568 58691607 -123723635 - L1ME1 LINE L1 -39 6131 6096 2113 130 3 7 chr6 58691607 58691906 -123723336 - AluSx SINE Alu -14 298 1 838 247 99 34 chr6 58691906 58692197 -123723045 - L1ME1 LINE L1 -74 6096 5798 1151 215 9 0 chr6 58692205 58692419 -123722823 - MLT1C LTR MaLR -8 459 244 503 299 241 0 chr6 58692868 58693212 -123722030 + L2 LINE L2 1739 2165 -1149 2043 209 62 5 chr6 58693219 58693625 -123721617 + MLT1F1 LTR MaLR 139 567 0 213 306 191 0 chr6 58693631 58693788 -123721454 + L2 LINE L2 2832 3018 -254 * 274 206 98 43 chr6 58693780 58693872 -123721370 + L2 LINE L2 3217 3313 0 458 235 128 66 chr6 58694614 58694823 -123720419 + LTR33 LTR ERVL 218 445 -76 2185 123 67 17 chr6 58694823 58695180 -123720062 + THE1C LTR MaLR 1 375 0 458 235 128 66 chr6 58695180 58695213 -123720029 + LTR33 LTR ERVL 445 475 -46 1896 163 7 0 chr6 58695213 58695520 -123719722 - AluSx SINE Alu -3 309 1 28 0 0 0 chr6 58695733 58695761 -123719481 + AT_rich Low_complexity Low_complexity 1 28 0 1705 171 99 38 chr6 58696468 58696812 -123718430 + MER93b LTR ERV1 9 373 0 187 337 72 30 chr6 58696942 58697108 -123718134 + L2 LINE L2 2741 2913 -401 554 176 157 57 chr6 58697333 58697492 -123717750 + MLT1C LTR MaLR 2 176 -291 2867 164 62 0 chr6 58697516 58697980 -123717262 - LTR42 LTR ERVL -2 493 1 4609 95 20 25 chr6 58698330 58698497 -123716745 + HUERS-P3 LTR ERV1 4009 4175 -3243 2221 74 0 0 chr6 58698497 58698766 -123716476 + AluY SINE Alu 39 307 -4 4609 95 20 25 chr6 58698766 58699267 -123715975 + HUERS-P3 LTR ERV1 4175 6694 -724 3254 125 0 0 chr6 58699264 58699712 -123715530 + HUERS-P3 LTR ERV1 8469 8916 -3 * 3764 104 35 11 chr6 58699714 58700261 -123714981 + LTR9B LTR ERV1 1 560 -84 234 0 0 0 chr6 58700261 58700287 -123714955 + (A)n Simple_repeat Simple_repeat 1 26 0 318 28 0 0 chr6 58701634 58701670 -123713572 - U2 snRNA snRNA -152 36 1 309 332 63 35 chr6 58701956 58702535 -123712707 - LTR57-int LTR ERVL -1267 4076 3639 1788 146 25 41 chr6 58702755 58703070 -123712172 - MSTB LTR MaLR -9 417 108 1916 192 28 101 chr6 58703073 58703650 -123711592 + MLT2B3 LTR ERVL 20 554 0 780 145 0 0 chr6 58703650 58703767 -123711475 - MSTB LTR MaLR -309 117 1 1001 319 75 46 chr6 58704244 58705173 -123710069 - LTR57-int LTR ERVL -3094 2953 1998 947 151 52 58 chr6 58705200 58705441 -123709801 + MLT2A2 LTR ERVL 293 453 0 2035 128 0 64 chr6 58705812 58706141 -123709101 - AluSx SINE Alu -4 308 1 2742 140 28 5 chr6 58706353 58706781 -123708461 - LTR42 LTR ERVL -51 444 7 1225 220 57 10 chr6 58706800 58707100 -123708142 + MLT1C LTR MaLR 145 458 -9 21 36 0 0 chr6 58709282 58709310 -123705932 + AT_rich Low_complexity Low_complexity 1 28 0 919 221 55 18 chr6 58709340 58709557 -123705685 + AluJo SINE Alu 86 310 -2 2128 222 20 26 chr6 58710536 58711077 -123704165 - L1MB7 LINE L1 -68 6116 5579 606 282 14 50 chr6 58713416 58713636 -123701606 + MIR SINE MIR 49 260 -2 1329 210 69 7 chr6 58713883 58714174 -123701068 + MER65A LTR ERV1 137 445 0 908 213 5 0 chr6 58714785 58714973 -123700269 - MER53 DNA DNA 0 189 1 260 260 91 0 chr6 58714989 58715066 -123700176 + L2 LINE L2 2886 2969 -303 309 262 78 10 chr6 58715263 58715366 -123699876 - L1MC5 LINE L1 -46 7915 7806 1122 274 120 16 chr6 58715403 58715837 -123699405 + MLT1D LTR MaLR 27 505 0 503 205 40 107 chr6 58715842 58716140 -123699102 - L1MC5 LINE L1 -160 7801 7524 3288 202 26 83 chr6 58716382 58717409 -123697833 - LTR5 LTR ERVK 0 969 1 226 250 0 0 chr6 58720403 58720455 -123694787 + L1MC4 LINE L1 7836 7887 -155 2206 221 28 31 chr6 58721796 58722402 -123692840 - L1MB7 LINE L1 0 6184 5581 1872 169 14 0 chr6 58723319 58723614 -123691628 - AluSx SINE Alu -13 299 1 464 216 80 16 chr6 58725126 58725251 -123689991 + L2 LINE L2 3137 3269 -3 900 259 46 28 chr6 58725354 58725786 -123689456 - L1MC5 LINE L1 -30 7931 7492 249 83 0 0 chr6 58726082 58726118 -123689124 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 202 319 104 18 chr6 58726385 58726548 -123688694 - MIR SINE MIR -3 259 83 266 281 175 9 chr6 58726973 58727087 -123688155 - MIR SINE MIR -74 188 56 492 222 133 11 chr6 58727128 58727308 -123687934 - MER112 DNA MER1_type 0 260 59 2172 135 3 0 chr6 58727675 58727987 -123687255 - AluSq SINE Alu 0 313 1 251 313 129 7 chr6 58728600 58728747 -123686495 - MIR SINE MIR -85 177 13 302 247 62 0 chr6 58729176 58729273 -123685969 + MIR SINE MIR 95 197 -65 417 241 29 17 chr6 58729381 58729555 -123685687 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 608 199 21 86 chr6 58729803 58729933 -123685309 + MER20 DNA MER1_type 4 120 -99 6024 129 21 21 chr6 58729933 58730902 -123684340 + LTR5 LTR ERVK 1 969 0 608 199 21 86 chr6 58730902 58730957 -123684285 + MER20 DNA MER1_type 120 177 -42 253 278 97 0 chr6 58731027 58731099 -123684143 - MIR SINE MIR -91 117 39 889 186 57 6 chr6 58731969 58732146 -123683096 + MER53 DNA DNA 1 186 -3 595 276 89 36 chr6 58732287 58732591 -123682651 + MLT1D LTR MaLR 18 337 -168 214 289 82 0 chr6 58732825 58732922 -123682320 + L2 LINE L2 3168 3272 0 351 0 0 0 chr6 58735150 58735189 -123680053 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1727 173 13 89 chr6 58735714 58736107 -123679135 + MLT1A1 LTR MaLR 1 363 -2 1628 202 71 3 chr6 58736156 58736493 -123678749 + MER89 LTR ERV1 200 559 0 552 230 58 37 chr6 58736602 58736793 -123678449 + MER89-int LTR ERV1 140 334 -6467 395 266 63 35 chr6 58736883 58737026 -123678216 + MER89-int LTR ERV1 452 598 -6203 415 165 253 0 chr6 58737126 58737217 -123678025 - MER21B LTR ERV1 -423 440 327 253 335 24 37 chr6 58737471 58737635 -123677607 - MIR SINE MIR -17 245 84 22 35 0 0 chr6 58737873 58737902 -123677340 + AT_rich Low_complexity Low_complexity 1 29 0 2077 124 10 0 chr6 58738227 58738526 -123676716 - AluSx SINE Alu -9 303 2 1459 212 50 17 chr6 58738532 58738890 -123676352 - L1MB7 LINE L1 -1 6183 5814 3408 37 0 0 chr6 58738896 58739279 -123675963 - L1PA4 LINE L1 -3 6152 5770 44486 45 2 0 chr6 58739331 58745476 -123669766 - L1PA2 LINE L1 0 6155 2 1130 206 16 0 chr6 58745475 58745718 -123669524 - L1MB7 LINE L1 -357 5827 5581 * 608 309 40 5 chr6 58749891 58750092 -123665150 + MIR SINE MIR 42 249 -13 455 245 0 0 chr6 58750442 58750540 -123664702 + MIR SINE MIR 51 148 -114 3206 180 18 88 chr6 58751210 58751999 -123663243 - MSTA-int LTR MaLR -915 736 3 2049 121 104 9 chr6 58752001 58752347 -123662895 - MSTA LTR MaLR 0 428 50 807 97 67 8 chr6 58752334 58752468 -123662774 - MSTA LTR MaLR -286 142 1 * 1448 207 10 3 chr6 58752679 58752978 -123662264 + AluJo SINE Alu 1 301 -11 548 237 46 67 chr6 58753076 58753270 -123661972 + MER20 DNA MER1_type 23 212 -7 227 357 83 0 chr6 58753316 58753400 -123661842 - MIR SINE MIR -85 123 33 218 301 223 10 chr6 58753460 58753563 -123661679 + L2 LINE L2 3116 3240 -32 22 35 0 0 chr6 58753683 58753712 -123661530 + AT_rich Low_complexity Low_complexity 1 29 0 5825 93 81 67 chr6 58754434 58755941 -123659301 + pTR5 LTR ERV1 92 2438 0 1938 191 72 12 chr6 58756047 58756465 -123658777 + MER65A LTR ERV1 1 443 -2 905 201 5 5 chr6 58757087 58757276 -123657966 - MER53 DNA DNA 0 189 1 212 278 0 0 chr6 58757314 58757368 -123657874 + L2 LINE L2 2915 2968 -304 190 284 137 29 chr6 58757435 58757537 -123657705 + L2 LINE L2 3134 3246 -26 312 218 81 65 chr6 58757548 58757672 -123657570 - L1MC5 LINE L1 -34 7927 7802 1027 296 32 32 chr6 58757677 58758139 -123657103 + MLT1C LTR MaLR 6 467 0 523 198 40 107 chr6 58758144 58758442 -123656800 - L1MC5 LINE L1 -160 7801 7524 23 33 0 0 chr6 58758446 58758476 -123656766 + AT_rich Low_complexity Low_complexity 1 30 0 201 380 13 0 chr6 58758938 58759017 -123656225 - L2 LINE L2 -598 2716 2637 2194 223 25 22 chr6 58763035 58763637 -123651605 - L1MB7 LINE L1 0 6184 5581 372 227 0 0 chr6 58764552 58764640 -123650602 + (TA)n Simple_repeat Simple_repeat 1 88 0 1807 176 20 0 chr6 58764640 58764936 -123650306 - AluSx SINE Alu -10 302 1 421 207 74 22 chr6 58766433 58766568 -123648674 + L2 LINE L2 3169 3310 -3 856 251 28 37 chr6 58766671 58767101 -123648141 - L1MC5 LINE L1 -30 7931 7506 234 62 0 0 chr6 58767395 58767427 -123647815 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 185 325 84 18 chr6 58767693 58767859 -123647383 - MIR SINE MIR -3 259 83 243 293 171 8 chr6 58768280 58768403 -123646839 - MIR SINE MIR -71 191 49 411 221 52 29 chr6 58768472 58768608 -123646634 - MER112 DNA MER1_type -57 203 65 21 0 0 0 chr6 58768970 58768991 -123646251 + AT_rich Low_complexity Low_complexity 1 21 0 2013 126 3 0 chr6 58768991 58769277 -123645965 - AluSq SINE Alu -26 287 1 248 330 54 0 chr6 58769877 58769989 -123645253 - MIR SINE MIR -74 188 71 302 281 53 0 chr6 58770470 58770584 -123644658 + MIR SINE MIR 95 214 -48 431 230 35 23 chr6 58770680 58770854 -123644388 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 754 189 31 63 chr6 58771102 58771293 -123643949 + MER20 DNA MER1_type 4 188 -31 225 292 97 0 chr6 58771357 58771429 -123643813 - MIR SINE MIR -91 117 39 895 169 57 6 chr6 58772303 58772480 -123642762 + MER53 DNA DNA 1 186 -3 641 263 95 43 chr6 58772621 58772925 -123642317 + MLT1D LTR MaLR 18 337 -168 378 0 0 0 chr6 58775479 58775521 -123639721 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1549 186 10 87 chr6 58776047 58776440 -123638802 + MLT1A1 LTR MaLR 1 363 -2 1410 221 94 3 chr6 58776489 58776819 -123638423 + MER89 LTR ERV1 200 559 0 571 247 37 26 chr6 58776931 58777121 -123638121 + MER89-int LTR ERV1 143 334 -6467 269 240 70 70 chr6 58777225 58777354 -123637888 + MER89-int LTR ERV1 470 598 -6203 691 159 9 0 chr6 58777454 58777567 -123637675 - MER21B LTR ERV1 -423 440 327 195 341 24 37 chr6 58777819 58777983 -123637259 - MIR SINE MIR -17 245 84 22 35 0 0 chr6 58778196 58778225 -123637017 + AT_rich Low_complexity Low_complexity 1 29 0 2192 120 0 3 chr6 58778574 58778883 -123636359 - AluSc SINE Alu -1 308 1 2222 122 0 0 chr6 58778888 58779183 -123636059 - AluSx SINE Alu -16 296 2 2611 212 34 7 chr6 58779189 58779775 -123635467 - L1MB7 LINE L1 -2 6182 5581 610 282 42 14 chr6 58782203 58782416 -123632826 + MIR SINE MIR 42 260 -2 420 245 0 0 chr6 58782755 58782853 -123632389 + MIR SINE MIR 51 148 -114 459 234 7 35 chr6 58783899 58784040 -123631202 + L2 LINE L2 3173 3309 -4 2578 152 42 73 chr6 58784267 58784859 -123630383 - MER4B LTR ERV1 -36 574 1 346 280 16 0 chr6 58784868 58784993 -123630249 - L1MC5 LINE L1 -136 7825 7699 300 282 161 8 chr6 58785711 58785835 -123629407 - MIR SINE MIR -71 191 49 353 224 69 0 chr6 58785926 58786042 -123629200 - MER112 DNA MER1_type -77 183 60 293 267 113 26 chr6 58786976 58787138 -123628104 - MIR3 SINE MIR -69 139 1 203 297 69 0 chr6 58787559 58787660 -123627582 + MIR SINE MIR 112 219 -43 2167 149 91 8 chr6 58788813 58789208 -123626034 - MSTA LTR MaLR 0 428 1 8087 187 16 49 chr6 58789224 58790895 -123624347 - MSTA-int LTR MaLR -34 1617 3 2320 131 88 10 chr6 58790897 58791294 -123623948 - MSTA LTR MaLR 0 428 1 1450 217 7 3 chr6 58791506 58791806 -123623436 + AluJo SINE Alu 1 301 -11 578 216 52 72 chr6 58791904 58792098 -123623144 + MER20 DNA MER1_type 23 212 -7 199 313 138 0 chr6 58792144 58792224 -123623018 - MIR SINE MIR -85 123 33 183 311 223 10 chr6 58792284 58792387 -123622855 + L2 LINE L2 3116 3240 -32 22 35 0 0 chr6 58792504 58792533 -123622709 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr6 58792820 58792844 -123622398 + (TCTCCC)n Simple_repeat Simple_repeat 3 26 0 7660 82 12 194 chr6 58792847 58794469 -123620773 + SVA Other Other 60 1386 0 1486 188 41 0 chr6 58794756 58795049 -123620193 + MER65A LTR ERV1 139 443 -2 756 243 5 5 chr6 58795666 58795855 -123619387 - MER53 DNA DNA 0 189 1 229 267 78 22 chr6 58795871 58795961 -123619281 + L2 LINE L2 2886 2980 -292 295 248 66 50 chr6 58796131 58796252 -123618990 - L1MC5 LINE L1 -34 7927 7805 488 213 40 74 chr6 58796260 58796431 -123618811 + MLT1C LTR MaLR 6 177 -328 3963 143 93 47 chr6 58796432 58797835 -123617407 - pTR5 LTR ERV1 0 2606 1524 694 276 42 8 chr6 58797856 58798095 -123617147 + MLT1C LTR MaLR 187 433 -34 394 221 44 99 chr6 58798141 58798435 -123616807 - L1MC5 LINE L1 -160 7801 7524 238 96 58 58 chr6 58801676 58801728 -123613514 + L1MC4 LINE L1 7836 7887 -155 2174 231 29 30 chr6 58803081 58803729 -123611513 - L1MB7 LINE L1 0 6184 5539 2253 132 0 0 chr6 58804602 58804906 -123610336 - AluSx SINE Alu -8 304 1 546 285 34 19 chr6 58806350 58806557 -123608685 + MIR SINE MIR 49 258 -4 388 272 10 0 chr6 58806844 58806947 -123608295 + MIR SINE MIR 51 154 -108 535 188 29 29 chr6 58807982 58808120 -123607122 + L2 LINE L2 3173 3310 -3 807 260 65 18 chr6 58808243 58808643 -123606599 - L1MC5 LINE L1 -51 7910 7492 187 357 77 11 chr6 58809219 58809401 -123605841 - MIR SINE MIR -3 259 66 368 309 180 11 chr6 58809751 58809929 -123605313 - MIR SINE MIR -6 256 49 454 194 65 29 chr6 58809998 58810137 -123605105 - MER112 DNA MER1_type -57 203 60 1943 144 7 3 chr6 58810497 58810795 -123604447 - AluSq SINE Alu -11 302 4 6344 57 8 0 chr6 58810851 58811636 -123603606 - L1PA7 LINE L1 -2 6152 5362 282 255 59 20 chr6 58812740 58812842 -123602400 + MIR SINE MIR 95 200 -62 434 233 34 28 chr6 58812950 58813126 -123602116 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 694 216 20 59 chr6 58813371 58813575 -123601667 + MER20 DNA MER1_type 4 199 -20 279 250 97 0 chr6 58813626 58813698 -123601544 - MIR SINE MIR -91 117 39 902 206 5 5 chr6 58814576 58814765 -123600477 - MER53 DNA DNA 0 189 1 636 270 92 40 chr6 58814894 58815198 -123600044 + MLT1D LTR MaLR 18 337 -168 203 308 29 29 chr6 58818560 58818664 -123596578 - MIR SINE MIR -3 259 156 24421 82 8 2 chr6 58819139 58823262 -123591980 - L1PA7 LINE L1 -3 6466 2324 12806 112 4 3 chr6 58823235 58825114 -123590128 - L1PA7 LINE L1 -4587 1864 1 * 2373 227 20 25 chr6 58825123 58825731 -123589511 - L1MB7 LINE L1 0 6184 5580 1859 164 7 0 chr6 58826644 58826949 -123588293 - AluSx SINE Alu 0 307 1 2205 117 0 0 chr6 58827704 58828002 -123587240 - AluSg SINE Alu -12 298 1 488 291 40 20 chr6 58828712 58828911 -123586331 + MIR SINE MIR 49 251 -11 44271 45 3 2 chr6 58828919 58830749 -123584493 + L1PA3 LINE L1 1 1828 -4327 2610 34 0 0 chr6 58830749 58831047 -123584195 - AluYa5 SINE Alu -13 298 1 44271 45 3 2 chr6 58831047 58835365 -123579877 + L1PA3 LINE L1 1828 6155 0 3280 50 0 3 chr6 58835377 58835760 -123579482 + L1PA4 LINE L1 5770 6151 -4 900 113 138 44 chr6 58835775 58835978 -123579264 + Charlie5 DNA MER1_type 2352 2573 -39 225 0 0 0 chr6 58836244 58836269 -123578973 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 510 267 123 11 chr6 58836627 58836814 -123578428 + MIR SINE MIR 51 258 -4 562 192 89 96 chr6 58837545 58837757 -123577485 - L1MC5 LINE L1 -159 7802 7591 2199 120 3 0 chr6 58837757 58838056 -123577186 - AluSp SINE Alu -13 300 1 562 192 89 96 chr6 58838056 58838156 -123577086 - L1MC5 LINE L1 -370 7591 7492 300 27 0 0 chr6 58838452 58838489 -123576753 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 207 359 83 11 chr6 58838763 58838944 -123576298 - MIR SINE MIR -3 259 66 304 228 189 55 chr6 58839325 58839452 -123575790 - MIR SINE MIR -70 192 49 415 200 27 0 chr6 58839551 58839661 -123575581 - MER112 DNA MER1_type -88 172 60 295 248 104 38 chr6 58840596 58840741 -123574501 - MIR3 SINE MIR -54 154 22 216 0 0 0 chr6 58842921 58842945 -123572297 + (A)n Simple_repeat Simple_repeat 1 24 0 1812 203 9 9 chr6 58843477 58843826 -123571416 + MLT1A1 LTR MaLR 1 349 -16 1646 216 56 3 chr6 58843887 58844229 -123571013 + MER89 LTR ERV1 200 559 0 732 260 106 68 chr6 58844338 58844780 -123570462 + MER89-int LTR ERV1 140 598 -6203 612 179 8 34 chr6 58844880 58844997 -123570245 - MER21B LTR ERV1 -423 440 327 253 287 49 73 chr6 58845262 58845426 -123569816 - MIR SINE MIR -19 243 84 24 32 0 0 chr6 58845664 58845695 -123569547 + AT_rich Low_complexity Low_complexity 1 31 0 1964 212 44 7 chr6 58845793 58846250 -123568992 - L1MB7 LINE L1 -131 6053 5580 448 298 22 89 chr6 58848679 58848818 -123566424 + MIR SINE MIR 42 162 -100 2390 103 0 0 chr6 58848818 58849130 -123566112 + AluSx SINE Alu 1 312 0 448 298 22 89 chr6 58849130 58849215 -123566027 + MIR SINE MIR 162 251 -11 464 235 0 0 chr6 58849554 58849652 -123565590 + MIR SINE MIR 51 148 -114 207 0 0 0 chr6 58850266 58850289 -123564953 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 536 212 7 36 chr6 58850738 58850875 -123564367 + L2 LINE L2 3173 3305 -8 2470 129 33 68 chr6 58851049 58851340 -123563902 - MER4B LTR ERV1 -7 772 472 3587 196 20 66 chr6 58851340 58852356 -123562886 + LTR5 LTR ERVK 1 969 0 2470 129 33 68 chr6 58852356 58852707 -123562535 - MER4B LTR ERV1 -307 472 1 835 246 46 30 chr6 58852716 58853045 -123562197 - L1MC5 LINE L1 -136 7825 7492 204 135 0 0 chr6 58853347 58853384 -123561858 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 215 282 25 112 chr6 58853651 58853765 -123561477 - MIR SINE MIR -3 259 169 2245 94 17 0 chr6 58853765 58854063 -123561179 - AluY SINE Alu -8 303 1 215 282 25 112 chr6 58854063 58854154 -123561088 - MIR SINE MIR -93 169 72 2252 144 29 27 chr6 58854320 58854694 -123560548 + THE1C LTR MaLR 1 375 0 407 244 163 0 chr6 58854940 58855063 -123560179 - MIR SINE MIR -71 191 49 2142 117 3 10 chr6 58855088 58855395 -123559847 + AluSx SINE Alu 6 310 -2 407 220 28 0 chr6 58855475 58855584 -123559658 - MER112 DNA MER1_type -89 171 60 228 309 88 31 chr6 58856513 58856668 -123558574 - MIR3 SINE MIR -69 139 11 202 237 21 97 chr6 58857080 58857118 -123558124 + MIR SINE MIR 112 151 -111 1970 157 0 0 chr6 58857118 58857418 -123557824 + AluSx SINE Alu 1 300 -12 202 237 21 97 chr6 58857418 58857472 -123557770 + MIR SINE MIR 151 197 -65 2028 150 32 32 chr6 58857472 58857845 -123557397 + THE1C LTR MaLR 1 373 -2 261 0 0 0 chr6 58857962 58857991 -123557251 + (TC)n Simple_repeat Simple_repeat 2 30 0 2609 121 3 3 chr6 58858127 58858491 -123556751 + THE1B LTR MaLR 1 364 0 1865 155 6 25 chr6 58859050 58859406 -123555836 + AluJb SINE Alu 1 350 0 662 262 48 10 chr6 58860019 58860225 -123555017 + MER20 DNA MER1_type 2 215 -4 269 309 83 0 chr6 58860263 58860347 -123554895 - MIR SINE MIR -85 123 33 26 64 0 0 chr6 58860439 58860486 -123554756 + AT_rich Low_complexity Low_complexity 1 47 0 1850 208 49 7 chr6 58861312 58861739 -123553503 + MER65A LTR ERV1 1 445 0 851 214 5 0 chr6 58862358 58862545 -123552697 - MER53 DNA DNA 0 189 2 211 226 0 48 chr6 58862577 58862639 -123552603 + L2 LINE L2 2911 2969 -303 241 276 82 10 chr6 58862716 58862814 -123552428 + L2 LINE L2 3142 3246 -26 253 242 0 50 chr6 58862828 58862927 -123552315 - L1MC5 LINE L1 -36 7925 7832 700 262 120 33 chr6 58862954 58863379 -123551863 + MLT1D LTR MaLR 6 467 0 415 226 30 48 chr6 58863384 58863552 -123551690 - L1MC5 LINE L1 -164 7797 7633 1486 150 69 98 chr6 58866773 58867152 -123548090 - LTR10A LTR ERV1 -61 548 181 285 239 162 81 chr6 58867165 58867387 -123547855 - LTR10A LTR ERV1 -356 253 14 207 299 11 96 chr6 58868277 58868342 -123546900 - MIR SINE MIR -17 245 176 2020 142 10 3 chr6 58868342 58868653 -123546589 - AluSq SINE Alu 0 313 1 207 299 11 96 chr6 58868653 58868764 -123546478 - MIR SINE MIR -86 176 84 2494 224 20 17 chr6 58869192 58869795 -123545447 - L1MB7 LINE L1 0 6184 5580 2430 49 7 33 chr6 58871397 58871701 -123543541 + AluY SINE Alu 1 296 -15 1818 175 3 13 chr6 58872066 58872381 -123542861 - AluJo SINE Alu 0 312 1 325 244 89 0 chr6 58873006 58873096 -123542146 + L2 LINE L2 3196 3293 -20 758 261 48 36 chr6 58873228 58873646 -123541596 - L1MC5 LINE L1 -51 7910 7488 279 54 0 0 chr6 58873951 58873988 -123541254 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 319 312 117 19 chr6 58874315 58874469 -123540773 - MIR3 SINE MIR -24 184 16 7770 25 0 11 chr6 58874515 58876079 -123539163 + L1PA3 LINE L1 4601 6155 0 1509 205 37 7 chr6 58876331 58876629 -123538613 + AluJb SINE Alu 1 307 -5 21 0 0 0 chr6 58876752 58876773 -123538469 + AT_rich Low_complexity Low_complexity 1 21 0 349 231 8 8 chr6 58877005 58877122 -123538120 + GA-rich Low_complexity Low_complexity 1 117 0 270 250 58 33 chr6 58878428 58878548 -123536694 + L2 LINE L2 3133 3255 -17 7804 192 40 71 chr6 58878745 58880829 -123534413 - L1MC4a LINE L1 -27 7781 5768 2003 138 0 26 chr6 58880829 58881140 -123534102 - AluSg SINE Alu -7 303 1 7804 192 40 71 chr6 58881140 58881258 -123533984 - L1MC4a LINE L1 -2040 5768 5648 378 368 25 16 chr6 58881860 58882178 -123533064 - L2 LINE L2 -526 2788 2468 252 301 105 13 chr6 58882780 58882933 -123532309 + L2 LINE L2 2726 2892 -422 1063 62 0 0 chr6 58882967 58883097 -123532145 - LTR17 LTR ERV1 -650 130 1 2376 79 0 0 chr6 58883097 58883389 -123531853 - HERV17 LTR ERV1 0 8626 8335 289 77 0 0 chr6 58883379 58883418 -123531824 - HERV17 LTR ERV1 -1078 7548 7510 * 30225 47 6 6 chr6 58883411 58885024 -123530218 - HERV17 LTR ERV1 -2607 6019 4407 2279 107 0 0 chr6 58885024 58885322 -123529920 + AluY SINE Alu 3 300 -11 30225 47 6 6 chr6 58885322 58887300 -123527942 - HERV17 LTR ERV1 -4219 4407 2430 15048 73 31 4 chr6 58887283 58889246 -123525996 - HERV17 LTR ERV1 -6610 2016 2 * 5813 76 29 3 chr6 58889246 58890006 -123525236 - LTR17 LTR ERV1 0 780 1 2489 239 46 11 chr6 58890006 58890545 -123524697 + HERV3 LTR ERV1 924 1481 -6945 1946 114 85 80 chr6 58890539 58890771 -123524471 + HERV3 LTR ERV1 3946 4182 -3631 * 8298 50 9 1 chr6 58890771 58891729 -123523513 + LTR5 LTR ERVK 1 966 -3 1946 114 85 80 chr6 58891729 58891873 -123523369 + HERV3 LTR ERV1 4182 4324 -3489 1705 233 91 0 chr6 58891880 58892210 -123523032 + HERV3 LTR ERV1 1721 2080 -6346 1619 255 9 63 chr6 58892442 58892797 -123522445 + HERV3 LTR ERV1 2066 2396 -6030 2595 59 3 0 chr6 58892797 58893104 -123522138 + AluY SINE Alu 1 308 -3 1619 255 9 63 chr6 58893104 58893175 -123522067 + HERV3 LTR ERV1 2396 2469 -5957 489 270 8 24 chr6 58893174 58893300 -123521942 + HERV3 LTR ERV1 3701 3824 -4602 * 6570 201 20 6 chr6 58893294 58894425 -123520817 + HERV3 LTR ERV1 5149 6295 -2131 2026 186 34 27 chr6 58894499 58894614 -123520628 + HERV3 LTR ERV1 7012 7125 -688 306 0 0 0 chr6 58894614 58894648 -123520594 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2026 186 34 27 chr6 58894648 58895246 -123519996 + HERV3 LTR ERV1 7125 7811 -2 1627 215 46 58 chr6 58895321 58895735 -123519507 + LTR2 LTR ERV1 41 449 0 2123 102 17 7 chr6 58896195 58896488 -123518754 + AluSq SINE Alu 1 296 -17 1870 141 33 20 chr6 58896778 58897083 -123518159 - AluSg SINE Alu -1 309 1 268 336 129 0 chr6 58897573 58897713 -123517529 - MIR SINE MIR -85 177 20 604 196 183 0 chr6 58897963 58898116 -123517126 - MER5A DNA MER1_type 0 189 9 200 171 0 0 chr6 58898846 58898881 -123516361 - L2 LINE L2 -19 3253 3219 189 74 0 0 chr6 58898901 58898928 -123516314 + (CA)n Simple_repeat Simple_repeat 2 28 0 227 256 72 34 chr6 58899617 58899813 -123515429 + MIR SINE MIR 1 247 -15 225 168 22 88 chr6 58899915 58900052 -123515190 - Zaphod DNA AcHobo -3190 841 714 2357 90 0 7 chr6 58900124 58900423 -123514819 - AluSq SINE Alu -16 297 1 26 101 0 0 chr6 58900567 58900656 -123514586 + AT_rich Low_complexity Low_complexity 1 89 0 312 98 0 0 chr6 58901065 58901106 -123514136 - 5S rRNA rRNA -80 41 1 466 302 13 0 chr6 58901229 58901378 -123513864 + MIR SINE MIR 106 256 -6 2115 153 11 21 chr6 58901798 58902171 -123513071 + L1MB4 LINE L1 5806 6174 -6 2781 116 24 12 chr6 58902776 58903199 -123512043 + MSTA LTR MaLR 1 428 0 447 225 193 28 chr6 58903378 58903596 -123511646 + L1ME1 LINE L1 5931 6184 0 1730 189 13 3 chr6 58903606 58903913 -123511329 + AluJb SINE Alu 1 310 -2 268 200 0 82 chr6 58903921 58904006 -123511236 + L1ME3 LINE L1 6084 6161 -1 1463 133 115 4 chr6 58904079 58904338 -123510904 - AluJb SINE Alu 0 306 22 2205 113 0 25 chr6 58904397 58904717 -123510525 + AluSx SINE Alu 1 312 0 184 354 26 26 chr6 58904849 58904962 -123510280 + MIR SINE MIR 30 142 -120 582 92 35 23 chr6 58907224 58907311 -123507931 + FRAM SINE Alu 72 159 -17 2140 154 0 0 chr6 58908365 58908664 -123506578 - AluSx SINE Alu -13 299 1 235 278 28 0 chr6 58908667 58908739 -123506503 + L1MC4a LINE L1 5608 5681 -440 848 190 12 122 chr6 58908752 58908916 -123506326 + AluJo SINE Alu 1 137 -175 2142 126 0 17 chr6 58908916 58909217 -123506025 + AluSg SINE Alu 1 296 -14 420 242 60 101 chr6 58909229 58909597 -123505645 + L1MC4a LINE L1 5720 6072 -1736 2064 143 0 3 chr6 58909632 58909926 -123505316 - AluSx SINE Alu -19 293 1 2281 120 0 0 chr6 58910157 58910457 -123504785 - AluSx SINE Alu -12 300 1 1421 123 5 0 chr6 58910986 58911181 -123504061 - AluSc SINE Alu -18 291 96 2315 85 7 0 chr6 58911213 58911506 -123503736 - AluSc SINE Alu -14 295 1 1707 187 0 10 chr6 58911533 58911843 -123503399 + AluJo SINE Alu 1 307 -5 333 0 0 0 chr6 58911849 58911886 -123503356 + (CA)n Simple_repeat Simple_repeat 1 37 0 8769 62 3 2 chr6 58911999 58913067 -123502175 + MER11C LTR ERVK 2 1070 -1 1063 178 0 0 chr6 58913069 58913249 -123501993 + AluJb SINE Alu 129 308 -4 579 29 0 0 chr6 58913255 58913324 -123501918 + (CA)n Simple_repeat Simple_repeat 1 69 0 180 0 0 0 chr6 58913672 58913692 -123501550 + (CAA)n Simple_repeat Simple_repeat 2 21 0 414 281 60 78 chr6 58914214 58914406 -123500836 + L1MEd LINE L1 666 851 -5268 2445 136 87 2 chr6 58914406 58914819 -123500423 - MER83 LTR ERV1 0 448 1 414 281 60 78 chr6 58914819 58914961 -123500281 + L1MEd LINE L1 851 994 -5125 386 258 68 21 chr6 58914963 58915153 -123500089 + L1MEd LINE L1 1056 1254 -4865 250 135 0 58 chr6 58915200 58915252 -123499990 + AluJb SINE Alu 86 134 -168 653 173 0 0 chr6 58915257 58915367 -123499875 + AluJb SINE Alu 6 115 -197 315 0 0 0 chr6 58915367 58915402 -123499840 + (CA)n Simple_repeat Simple_repeat 2 36 0 1191 160 127 20 chr6 58915411 58915524 -123499718 + AluJo SINE Alu 6 106 -206 315 0 0 0 chr6 58915524 58915559 -123499683 + (CA)n Simple_repeat Simple_repeat 1 35 0 1191 160 127 20 chr6 58915559 58915689 -123499553 + AluJo SINE Alu 106 275 -37 477 34 0 0 chr6 58915689 58915748 -123499494 + (TG)n Simple_repeat Simple_repeat 1 59 0 247 223 21 21 chr6 58915762 58915789 -123499453 + GA-rich Low_complexity Low_complexity 4 30 -67 3497 204 19 65 chr6 58915789 58916805 -123498437 - LTR5 LTR ERVK 0 969 1 247 223 21 21 chr6 58916805 58916871 -123498371 + GA-rich Low_complexity Low_complexity 29 97 0 382 301 67 38 chr6 58916885 58917227 -123498015 + HAL1 LINE L1 1424 1775 -732 2343 97 53 19 chr6 58917959 58918319 -123496923 + Tigger2a DNA MER2_type 1 372 -62 247 252 129 39 chr6 58918411 58918566 -123496676 + L1ME4a LINE L1 5942 6110 -11 2352 99 0 3 chr6 58919363 58919666 -123495576 - AluSx SINE Alu -10 302 1 285 105 0 0 chr6 58919833 58919871 -123495371 + L1MC3 LINE L1 6746 6783 -1002 2297 87 0 36 chr6 58919872 58920181 -123495061 + AluSx SINE Alu 3 300 -12 191 319 14 0 chr6 58920807 58920876 -123494366 + L2 LINE L2 3203 3272 0 642 204 23 15 chr6 58921336 58921468 -123493774 + FLAM_A SINE Alu 1 133 0 2011 155 7 0 chr6 58921473 58921783 -123493459 + AluSx SINE Alu 1 312 0 959 271 172 34 chr6 58922503 58922968 -123492274 + MLT1H LTR MaLR 18 546 -3 2026 148 7 0 chr6 58923170 58923468 -123491774 + AluSx SINE Alu 1 300 -12 718 118 0 0 chr6 58924057 58924159 -123491083 + AluSq/x SINE Alu 3 104 -208 209 357 0 25 chr6 58924629 58924786 -123490456 + CT-rich Low_complexity Low_complexity 1 153 0 278 245 41 71 chr6 58925837 58925935 -123489307 + L1ME3A LINE L1 5964 6058 -112 3620 182 122 7 chr6 58926097 58926834 -123488408 - MER21B LTR ERV1 -41 822 1 349 150 0 0 chr6 58926912 58926972 -123488270 - MER21B-int LTR ERV1 -42 4149 4090 305 54 0 0 chr6 58926963 58927000 -123488242 - pTR5 LTR ERV1 -2044 394 358 * 19751 105 48 46 chr6 58927012 58930838 -123484404 - MER21-int LTR ERV1 0 2438 17 990 171 113 42 chr6 58930837 58931076 -123484166 - pTR5 LTR ERV1 -1440 998 743 * 4156 126 49 23 chr6 58931075 58931657 -123483585 - MER21-int LTR ERV1 -90 4101 3497 3161 101 11 117 chr6 58931657 58932229 -123483013 + MER9 LTR ERVK 1 511 0 4156 126 49 23 chr6 58932229 58932337 -123482905 - MER21-int LTR ERV1 -694 3497 3393 391 177 63 13 chr6 58932338 58932417 -123482825 - LTR36 LTR ERV1 0 611 529 2266 89 23 0 chr6 58933065 58933367 -123481875 + AluSq SINE Alu 1 309 -4 2121 117 7 3 chr6 58933734 58934033 -123481209 - AluSx SINE Alu -12 300 1 262 250 0 48 chr6 58934747 58934831 -123480411 + MIR SINE MIR 103 182 -80 767 123 0 0 chr6 58935438 58935552 -123479690 + AluSg/x SINE Alu 192 305 -4 2149 135 3 0 chr6 58935972 58936275 -123478967 - AluSx SINE Alu -8 304 1 297 0 0 0 chr6 58937097 58937130 -123478112 + (A)n Simple_repeat Simple_repeat 1 33 0 1765 106 4 4 chr6 58937136 58937373 -123477869 + AluSp SINE Alu 1 237 -76 459 250 182 5 chr6 58937434 58937620 -123477622 + MIR SINE MIR 32 250 -12 326 277 43 0 chr6 58937712 58937806 -123477436 + MER5A DNA MER1_type 8 105 -84 252 233 0 68 chr6 58939035 58939108 -123476134 + MIR3 SINE MIR 121 188 -20 1977 163 0 0 chr6 58939125 58939425 -123475817 - AluJo SINE Alu -12 300 1 22 0 0 0 chr6 58941352 58941374 -123473868 + AT_rich Low_complexity Low_complexity 1 22 0 277 345 42 0 chr6 58941415 58941534 -123473708 - L2 LINE L2 -6 3307 3184 1566 216 61 31 chr6 58941563 58941852 -123473390 + L1MCa LINE L1 1969 2258 -4168 3314 68 23 14 chr6 58941852 58942292 -123472950 + MLT2A1 LTR ERVL 1 444 0 1566 216 61 31 chr6 58942292 58942521 -123472721 + L1MCa LINE L1 2258 2479 -3947 187 183 70 0 chr6 58942527 58942590 -123472652 - L2 LINE L2 -161 3152 3082 2080 133 3 0 chr6 58942590 58942876 -123472366 + AluSx SINE Alu 1 287 -25 1395 128 21 45 chr6 58944064 58944306 -123470936 - MER46A DNA MER2_type 0 236 1 859 214 80 116 chr6 58944456 58944792 -123470450 - MER77 LTR ERV1 -240 365 42 1857 109 0 82 chr6 58945369 58945663 -123469579 - AluSx SINE Alu -14 298 29 1159 106 196 0 chr6 58946832 58947021 -123468221 + MER30 DNA MER1_type 1 226 -4 679 44 55 11 chr6 58947256 58947347 -123467895 - HY3 scRNA scRNA -6 95 1 192 286 0 0 chr6 58947771 58947820 -123467422 - MIR SINE MIR -3 259 211 2252 112 3 0 chr6 58948399 58948695 -123466547 - AluSx SINE Alu -15 297 1 339 317 62 46 chr6 58948807 58949047 -123466195 + MIR SINE MIR 6 249 -13 1693 215 34 0 chr6 58949460 58949781 -123465461 - MER58B DNA MER1_type 0 341 10 211 381 18 18 chr6 58949787 58949955 -123465287 + MIR3 SINE MIR 31 198 -10 815 165 8 0 chr6 58950329 58950456 -123464786 + FLAM_A SINE Alu 1 128 -5 411 83 0 0 chr6 58950955 58951015 -123464227 + (GA)n Simple_repeat Simple_repeat 2 61 0 438 280 51 2 chr6 58951566 58951739 -123463503 + MIR SINE MIR 5 183 -67 381 263 34 0 chr6 58953010 58953128 -123462114 - MIR SINE MIR 0 262 141 2179 110 14 0 chr6 58953862 58954152 -123461090 + AluSg SINE Alu 1 294 -16 1051 188 9 28 chr6 58954265 58954478 -123460764 - MER3 DNA MER1_type 0 209 1 361 314 0 10 chr6 58955109 58955211 -123460031 + GA-rich Low_complexity Low_complexity 3 103 0 2902 142 35 8 chr6 58955513 58956020 -123459222 + L1MA4 LINE L1 5769 6289 -11 773 205 225 26 chr6 58956116 58956423 -123458819 + L1MC4 LINE L1 6755 7122 -920 802 255 117 58 chr6 58956434 58956961 -123458281 + L1MC4 LINE L1 7295 7868 -174 4110 94 7 9 chr6 58956961 58957516 -123457726 + MER41A LTR ERV1 1 554 0 802 255 117 58 chr6 58957516 58957628 -123457614 + L1MC4 LINE L1 7868 7972 -70 811 196 48 32 chr6 58957946 58958135 -123457107 - AluJb SINE Alu -14 298 107 442 270 27 0 chr6 58958967 58959078 -123456164 - Charlie8 DNA MER1_type -2196 221 108 645 246 127 25 chr6 58959189 58959425 -123455817 + L1MC5 LINE L1 6977 7236 -725 385 221 12 0 chr6 58959599 58959685 -123455557 + L1MC5 LINE L1 7299 7385 -576 958 235 124 34 chr6 58959783 58959848 -123455394 + L1MD3 LINE L1 6694 6752 -1243 2300 94 7 0 chr6 58959848 58960145 -123455097 - AluSg SINE Alu -11 299 1 958 235 124 34 chr6 58960145 58960458 -123454784 + L1MD3 LINE L1 6752 7106 -889 413 256 0 0 chr6 58960461 58960547 -123454695 + MLT1F1 LTR MaLR 35 120 -447 2335 186 77 23 chr6 58960547 58960910 -123454332 + L1MD3 LINE L1 7408 7813 -182 2058 113 7 7 chr6 58960910 58961201 -123454041 + AluSx SINE Alu 1 291 -21 2335 186 77 23 chr6 58961201 58961395 -123453847 + L1MD3 LINE L1 7813 7995 0 846 244 71 52 chr6 58961390 58961828 -123453414 + L1MC5 LINE L1 7480 7925 -36 * 225 262 29 39 chr6 58963232 58963335 -123451907 + GA-rich Low_complexity Low_complexity 1 102 0 1195 64 0 182 chr6 58963712 58963948 -123451294 + 7SK RNA RNA 1 193 0 48 32 0 0 chr6 58964070 58964132 -123451110 + AT_rich Low_complexity Low_complexity 1 62 0 1761 66 49 0 chr6 58964138 58964364 -123450878 - AluSx SINE Alu -75 237 1 186 209 0 0 chr6 58964540 58964583 -123450659 + (TA)n Simple_repeat Simple_repeat 1 43 0 194 337 58 0 chr6 58964975 58965061 -123450181 - L2 LINE L2 -590 2724 2634 504 0 0 0 chr6 58965212 58965268 -123449974 + (CA)n Simple_repeat Simple_repeat 2 57 0 372 278 156 17 chr6 58965276 58965449 -123449793 + L2 LINE L2 3117 3313 0 2090 118 3 10 chr6 58965586 58965891 -123449351 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr6 58966231 58966252 -123448990 + AT_rich Low_complexity Low_complexity 1 21 0 318 131 16 0 chr6 58966277 58966338 -123448904 - L1MA8 LINE L1 -4 6287 6226 938 168 6 12 chr6 58966338 58966494 -123448748 + MER2 DNA MER2_type 1 155 -190 1374 161 175 7 chr6 58966494 58966779 -123448463 - MER65A LTR ERV1 0 445 113 279 0 0 0 chr6 58966780 58966811 -123448431 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1742 153 43 0 chr6 58966813 58967094 -123448148 - AluJb SINE Alu -19 293 1 378 203 14 0 chr6 58967157 58967231 -123448011 + MER116 DNA Mariner 4 78 -2 2622 196 73 4 chr6 58967259 58967320 -123447922 + MER41D LTR ERV1 2 57 -500 1517 121 17 4 chr6 58967320 58967552 -123447690 + L1PA8 LINE L1 5938 6172 0 2622 196 73 4 chr6 58967552 58968010 -123447232 + MER41D LTR ERV1 57 557 0 249 33 0 0 chr6 58968238 58968268 -123446974 + (CCTA)n Simple_repeat Simple_repeat 2 31 0 1903 160 3 0 chr6 58968859 58969165 -123446077 - AluJo SINE Alu -3 309 3 279 137 0 179 chr6 58971479 58971549 -123443693 + MER116 DNA Mariner 1 51 -29 2156 91 59 0 chr6 58971549 58971835 -123443407 + AluY SINE Alu 1 303 -8 279 137 0 179 chr6 58971835 58971859 -123443383 + MER116 DNA Mariner 51 78 -2 1687 258 100 34 chr6 58973514 58974379 -123440863 + L2 LINE L2 2383 3309 -4 278 323 177 5 chr6 58974807 58975027 -123440215 - L1MC4a LINE L1 -1870 5938 5681 276 276 102 47 chr6 58975074 58975201 -123440041 + L2 LINE L2 3139 3272 0 968 271 91 29 chr6 58975453 58975739 -123439503 + L1M1 LINE L1 5318 5645 -530 2149 93 0 34 chr6 58975739 58976087 -123439155 + AluSx SINE Alu 1 338 0 968 271 91 29 chr6 58976087 58976249 -123438993 + L1M1 LINE L1 5645 5795 -380 209 167 42 28 chr6 58976261 58976333 -123438909 + (TA)n Simple_repeat Simple_repeat 1 73 0 2230 102 3 23 chr6 58976519 58976823 -123438419 - AluSx SINE Alu -14 298 1 691 246 177 35 chr6 58978424 58978966 -123436276 + L2 LINE L2 2546 3246 -67 286 260 156 0 chr6 58979044 58979121 -123436121 + L2 LINE L2 3223 3311 -2 2164 114 0 3 chr6 58979409 58979699 -123435543 + AluSx SINE Alu 3 291 -21 318 300 83 51 chr6 58981120 58981278 -123433964 - MIR SINE MIR -1 261 91 1152 228 15 8 chr6 58981278 58981537 -123433705 - MIR SINE MIR 0 262 2 318 300 83 51 chr6 58981537 58981631 -123433611 - MIR SINE MIR -171 91 1 245 356 40 10 chr6 58982346 58982447 -123432795 + MIR SINE MIR 55 158 -104 276 333 94 13 chr6 58983556 58983715 -123431527 + MIR SINE MIR 70 241 -21 236 250 164 0 chr6 58984726 58984830 -123430412 - MER103 DNA DNA -1 165 45 181 319 0 0 chr6 58984911 58984958 -123430284 + L3 LINE CR1 1530 1576 -1 262 262 93 52 chr6 58985281 58985453 -123429789 - L2 LINE L2 0 3313 3135 257 258 11 43 chr6 58986834 58986927 -123428315 + GA-rich Low_complexity Low_complexity 1 90 0 1501 179 32 49 chr6 58987778 58988063 -123427179 - AluJo SINE Alu -32 280 1 1522 164 0 8 chr6 58988544 58988782 -123426460 + MER46A DNA MER2_type 1 236 0 2169 98 0 14 chr6 58989130 58989415 -123425827 + AluSx SINE Alu 1 281 -31 560 178 56 0 chr6 58989738 58989828 -123425414 + Tigger3b DNA MER2_type 1 95 -1136 5481 103 92 17 chr6 58989830 58990721 -123424521 + Tigger3b DNA MER2_type 274 1231 0 207 0 0 0 chr6 58990845 58990868 -123424374 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 311 316 41 31 chr6 58990871 58990969 -123424273 - L2 LINE L2 -11 3261 3163 2373 92 0 0 chr6 58991029 58991324 -123423918 - AluY SINE Alu -16 295 1 2171 124 3 0 chr6 58992925 58993224 -123422018 - AluSx SINE Alu -12 300 1 800 190 88 60 chr6 58994056 58994240 -123421002 + MIR SINE MIR 10 203 -59 2033 94 60 0 chr6 58994240 58994540 -123420702 - AluSx SINE Alu 0 316 1 800 190 88 60 chr6 58994540 58994570 -123420672 + MIR SINE MIR 203 231 -31 1763 132 0 42 chr6 58995814 58995958 -123419284 + AluSx SINE Alu 1 129 -183 2506 57 3 3 chr6 58995958 58996258 -123418984 + AluY SINE Alu 2 301 -10 1763 132 0 42 chr6 58996258 58996400 -123418842 + AluSx SINE Alu 129 275 -37 303 308 65 35 chr6 58996510 58996679 -123418563 + MIR SINE MIR 41 214 -48 216 0 0 0 chr6 58996912 58996936 -123418306 + (TG)n Simple_repeat Simple_repeat 2 25 0 228 206 0 59 chr6 58996943 58997011 -123418231 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 230 163 0 0 chr6 58997033 58997076 -123418166 + L1MC4 LINE L1 6663 6705 -1337 628 140 21 0 chr6 58997731 58997824 -123417418 + FLAM_A SINE Alu 30 124 -18 2049 119 7 0 chr6 58999929 59000223 -123415019 - AluSp SINE Alu -17 296 1 219 238 0 0 chr6 59000400 59000411 -123414831 + A-rich Low_complexity Low_complexity 1 11 -69 776 33 0 0 chr6 59000411 59000501 -123414741 + L1PA3 LINE L1 6063 6152 -3 219 238 0 0 chr6 59000501 59000569 -123414673 + A-rich Low_complexity Low_complexity 10 80 0 1919 182 17 57 chr6 59004429 59004506 -123410736 + MER58D DNA MER1_type 1 80 -2340 2250 116 0 0 chr6 59004506 59004807 -123410435 - AluSx SINE Alu -11 301 1 1919 182 17 57 chr6 59004807 59005131 -123410111 + MER58D DNA MER1_type 80 386 0 938 185 95 11 chr6 59006392 59006581 -123408661 + MER3 DNA MER1_type 1 205 -4 1958 189 24 3 chr6 59006602 59006936 -123408306 + MER58B DNA MER1_type 1 341 0 216 304 29 0 chr6 59007066 59007135 -123408107 - MIR SINE MIR -126 136 66 279 262 127 56 chr6 59007198 59007324 -123407918 - L2 LINE L2 -1 3271 3137 180 382 13 0 chr6 59007402 59007478 -123407764 - L2 LINE L2 -497 2817 2741 715 251 26 0 chr6 59007479 59007674 -123407568 - LTR16C LTR ERVL 0 491 292 451 322 130 40 chr6 59007837 59008238 -123407004 - L2 LINE L2 -594 2720 2284 2406 219 72 25 chr6 59008246 59008812 -123406430 + MLT1E LTR MaLR 1 593 0 208 277 0 0 chr6 59008906 59008953 -123406289 + MIR SINE MIR 98 144 -64 530 216 85 65 chr6 59009555 59009681 -123405561 + MER58A DNA MER1_type 48 170 -2250 3472 136 93 9 chr6 59009684 59010242 -123405000 + MER6A DNA MER2_type 1 605 0 530 216 85 65 chr6 59009746 59010265 -123404977 + MER58A DNA MER1_type 170 203 -21 1679 189 23 0 chr6 59010776 59011119 -123404123 + L1MD3 LINE L1 7637 7987 -8 2196 108 0 0 chr6 59011125 59011412 -123403830 + AluSx SINE Alu 1 287 -25 40 0 0 0 chr6 59011412 59011452 -123403790 + AT_rich Low_complexity Low_complexity 1 40 0 350 314 34 17 chr6 59011724 59011842 -123403400 - L2 LINE L2 -12 3301 3182 1641 109 31 12 chr6 59012224 59012481 -123402761 + MER1B DNA MER1_type 1 262 -77 740 238 40 30 chr6 59012486 59012721 -123402521 + L1MC4 LINE L1 7737 7977 -65 1116 218 93 34 chr6 59012721 59013074 -123402168 + MLT1A2 LTR MaLR 1 374 0 740 238 40 30 chr6 59013074 59013141 -123402101 + L1MC4 LINE L1 7977 8042 0 2132 136 22 6 chr6 59013444 59013804 -123401438 + MER47A DNA MER2_type 1 366 0 21 0 0 0 chr6 59013882 59013903 -123401339 + AT_rich Low_complexity Low_complexity 1 21 0 499 305 125 16 chr6 59014065 59014321 -123400921 - L3b LINE CR1 -196 1387 1104 215 324 43 99 chr6 59014519 59014772 -123400470 - L3 LINE CR1 -1101 476 238 480 258 116 7 chr6 59015118 59015273 -123399969 - MER5B DNA MER1_type -1 177 6 332 326 145 43 chr6 59015303 59015384 -123399858 - L2 LINE L2 -448 2866 2795 1498 181 29 38 chr6 59015384 59015698 -123399544 - AluJo SINE Alu -1 311 1 332 326 145 43 chr6 59015698 59015898 -123399344 - L2 LINE L2 -519 2795 2556 298 227 53 13 chr6 59016126 59016201 -123399041 + MER91C DNA MER1_type 25 102 -38 302 282 286 24 chr6 59016216 59016471 -123398771 + L3 LINE CR1 1008 1329 -248 353 285 107 32 chr6 59016770 59017241 -123398001 + MLT1L LTR MaLR 3 527 -88 1834 158 24 0 chr6 59017820 59018112 -123397130 - AluJo SINE Alu -13 299 1 209 165 38 13 chr6 59018527 59018606 -123396636 + (TA)n Simple_repeat Simple_repeat 1 81 0 33 0 0 23 chr6 59018611 59018635 -123396607 + AT_rich Low_complexity Low_complexity 1 25 -18 1800 160 7 14 chr6 59018635 59018928 -123396314 + AluJb SINE Alu 1 291 -21 33 0 0 23 chr6 59018928 59018947 -123396295 + AT_rich Low_complexity Low_complexity 25 43 0 1537 240 96 17 chr6 59019393 59019860 -123395382 - MLT1D LTR MaLR 0 505 2 2620 72 11 11 chr6 59020023 59020382 -123394860 - L1PA8A LINE L1 -9 6122 5764 312 279 34 67 chr6 59020522 59020542 -123394700 + Charlie8 DNA MER1_type 91 110 -2307 2267 114 7 0 chr6 59020542 59020848 -123394394 + AluSg SINE Alu 1 308 -2 312 279 34 67 chr6 59020848 59021006 -123394236 + Charlie8 DNA MER1_type 110 263 -2154 741 237 77 21 chr6 59021506 59021700 -123393542 - MIR SINE MIR -18 244 40 240 275 154 7 chr6 59021907 59022056 -123393186 + MIR3 SINE MIR 38 208 0 220 362 19 29 chr6 59022497 59022602 -123392640 + MIR SINE MIR 46 149 -113 25 0 0 0 chr6 59023951 59023976 -123391266 + AT_rich Low_complexity Low_complexity 1 25 0 1007 214 42 0 chr6 59024409 59024624 -123390618 - MER58A DNA MER1_type 0 224 1 311 215 39 108 chr6 59024727 59024857 -123390385 + L2 LINE L2 3192 3312 -1 195 254 85 34 chr6 59025811 59025870 -123389372 - MIR3 SINE MIR -27 181 120 197 253 213 0 chr6 59027327 59027402 -123387840 - MIR SINE MIR -112 150 60 234 355 45 20 chr6 59027601 59027801 -123387441 - L2 LINE L2 -261 3011 2807 264 188 0 0 chr6 59027961 59028009 -123387233 - L2 LINE L2 0 3272 3225 182 327 142 0 chr6 59028009 59028171 -123387071 - L2 LINE L2 -683 2631 2447 343 160 53 0 chr6 59030266 59030341 -123384901 + L1MB4 LINE L1 6078 6156 -24 462 187 22 33 chr6 59030676 59030767 -123384475 - MER5A DNA MER1_type 0 189 100 2180 76 10 0 chr6 59031903 59032192 -123383050 + AluSg SINE Alu 1 292 -18 2222 77 25 0 chr6 59032304 59032590 -123382652 - AluSg SINE Alu -16 294 2 314 292 184 64 chr6 59033355 59033903 -123381339 + L1M2 LINE L1 473 1086 -5763 22 0 0 0 chr6 59034697 59034719 -123380523 + AT_rich Low_complexity Low_complexity 1 22 0 217 274 105 42 chr6 59035161 59035256 -123379986 - L2 LINE L2 0 3313 3213 208 206 87 98 chr6 59035279 59035371 -123379871 - MIR3 SINE MIR -9 199 109 339 291 67 61 chr6 59035530 59035695 -123379547 - L2 LINE L2 -218 3054 2889 1900 153 10 0 chr6 59036746 59037041 -123378201 - AluJb SINE Alu -14 298 1 524 267 8 0 chr6 59037090 59037210 -123378032 + FLAM_A SINE Alu 1 121 -12 823 175 148 44 chr6 59037576 59037941 -123377301 + L1MC5 LINE L1 7251 7653 -308 2042 149 13 3 chr6 59038102 59038411 -123376831 - AluSx SINE Alu 0 312 1 1048 206 169 7 chr6 59038551 59038847 -123376395 - MER2 DNA MER2_type 0 344 1 612 282 124 10 chr6 59039662 59040095 -123375147 + L1MC4a LINE L1 5327 5824 -297 1284 248 116 5 chr6 59040388 59040775 -123374467 - LTR16A LTR ERVL -5 445 16 2206 100 0 10 chr6 59040815 59041114 -123374128 - AluSx SINE Alu -16 296 1 3520 173 114 4 chr6 59042431 59043219 -123372023 - L1MD2 LINE L1 -16 6343 5469 1190 123 6 11 chr6 59043229 59043408 -123371834 - AluSx SINE Alu -14 295 118 309 142 0 11 chr6 59043457 59043526 -123371716 + Alu SINE Alu 2 45 -255 804 135 0 0 chr6 59043526 59043637 -123371605 - AluSx SINE Alu -201 111 1 1265 171 70 75 chr6 59043642 59043829 -123371413 - L1MC/D LINE L1 -743 5403 5217 2166 121 0 3 chr6 59043829 59044135 -123371107 - AluSx SINE Alu -7 305 1 1265 171 70 75 chr6 59044135 59044556 -123370686 - L1MC/D LINE L1 -929 5217 4855 503 209 86 0 chr6 59044748 59044853 -123370389 + MER2 DNA MER2_type 1 114 -231 21 36 0 0 chr6 59044879 59044907 -123370335 + AT_rich Low_complexity Low_complexity 1 28 0 354 239 0 0 chr6 59044907 59044974 -123370268 + MER2 DNA MER2_type 278 344 -1 21 0 0 0 chr6 59044987 59045008 -123370234 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 59045124 59045162 -123370080 + AT_rich Low_complexity Low_complexity 1 38 0 2845 0 3 0 chr6 59045284 59045592 -123369650 + AluYa5 SINE Alu 1 309 -2 1810 173 0 17 chr6 59046263 59046563 -123368679 + AluJo SINE Alu 1 295 -17 340 238 38 0 chr6 59047334 59047439 -123367803 + L1MC5 LINE L1 7817 7925 -36 186 71 0 0 chr6 59048389 59048417 -123366825 + (T)n Simple_repeat Simple_repeat 1 28 0 2045 116 0 11 chr6 59049353 59049664 -123365578 - AluSg SINE Alu 0 308 1 2048 143 0 0 chr6 59049881 59050174 -123365068 + AluSx SINE Alu 4 296 -16 772 161 14 0 chr6 59051130 59051273 -123363969 + L1P LINE L1 4887 5031 -1115 2303 123 89 19 chr6 59051482 59051898 -123363344 - MER65A LTR ERV1 0 445 1 1041 231 78 9 chr6 59051898 59052462 -123362780 - MER65A-int LTR ERV1 0 4871 4237 1168 237 153 18 chr6 59052462 59052855 -123362387 - MER65A-int LTR ERV1 -739 4132 3687 784 211 88 24 chr6 59052982 59053254 -123361988 - MER65A-int LTR ERV1 -977 3959 3594 960 207 121 44 chr6 59053263 59053728 -123361514 - MER65A-int LTR ERV1 -1593 4738 2534 * 1090 196 79 85 chr6 59053719 59053959 -123361283 - MER65A-int LTR ERV1 -1913 4418 4178 2333 93 3 0 chr6 59053959 59054261 -123360981 + AluSp SINE Alu 1 303 -10 1090 196 79 85 chr6 59054261 59054686 -123360556 - MER65A-int LTR ERV1 -2153 4178 3735 716 125 19 116 chr6 59054764 59054877 -123360365 - MER65A-int LTR ERV1 -2868 3730 3608 1360 150 146 8 chr6 59054877 59055151 -123360091 + AluJo SINE Alu 1 308 0 1835 191 3 3 chr6 59055154 59055463 -123359779 + AluJo SINE Alu 4 312 0 716 125 19 116 chr6 59055463 59055560 -123359682 - MER65A-int LTR ERV1 -2992 3606 3536 1227 159 128 68 chr6 59055823 59056308 -123358934 - MER65A-int LTR ERV1 -3119 3479 2966 863 161 93 51 chr6 59056325 59056561 -123358681 - LTR57-int LTR ERVL -4793 550 305 197 182 0 91 chr6 59056564 59056619 -123358623 - L3b LINE CR1 -105 1478 1429 2078 126 7 7 chr6 59056682 59056991 -123358251 - AluSx SINE Alu -3 309 1 1041 60 8 0 chr6 59057001 59057135 -123358107 - AluY SINE Alu 0 311 177 2396 67 0 6 chr6 59057153 59057466 -123357776 - AluY SINE Alu 0 311 1 1065 241 161 26 chr6 59057468 59057958 -123357284 - MER65A-int LTR ERV1 -4245 626 71 2312 115 96 10 chr6 59058030 59058438 -123356804 - MER65A LTR ERV1 -2 443 1 729 70 0 10 chr6 59058492 59058592 -123356650 + HY3 scRNA scRNA 1 99 -2 1087 147 2 9 chr6 59058791 59059027 -123356215 - AluJo SINE Alu -31 281 82 1885 200 0 6 chr6 59059052 59059367 -123355875 + 7SLRNA srpRNA srpRNA 1 313 -7 1046 301 152 14 chr6 59059440 59059466 -123355776 + L2 LINE L2 2459 2480 -833 2233 106 0 0 chr6 59059466 59059758 -123355484 - AluSg SINE Alu -18 292 1 1046 301 152 14 chr6 59059758 59060446 -123354796 + L2 LINE L2 2480 3311 -2 27 29 0 0 chr6 59060786 59060820 -123354422 + AT_rich Low_complexity Low_complexity 1 34 0 219 292 106 44 chr6 59061764 59061877 -123353365 - MER5B DNA MER1_type -30 148 29 235 343 0 20 chr6 59063304 59063406 -123351836 + MIR SINE MIR 98 197 -65 353 238 66 40 chr6 59063862 59064013 -123351229 + L1ME4a LINE L1 5420 5574 -588 1760 182 0 3 chr6 59064717 59065014 -123350228 + AluJo SINE Alu 4 299 -13 389 231 173 0 chr6 59065404 59065560 -123349682 + L1ME4a LINE L1 5709 5891 -230 186 43 0 0 chr6 59065996 59066019 -123349223 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 441 0 0 0 chr6 59066018 59066067 -123349175 + (TA)n Simple_repeat Simple_repeat 1 49 0 23 33 0 0 chr6 59066110 59066140 -123349102 + AT_rich Low_complexity Low_complexity 1 30 0 764 149 0 108 chr6 59066551 59066699 -123348543 + FLAM_A SINE Alu 1 132 -1 1756 173 0 20 chr6 59067196 59067491 -123347751 + AluJb SINE Alu 1 289 -23 1735 174 7 10 chr6 59067550 59067848 -123347394 + AluJo SINE Alu 1 297 -15 21 0 0 0 chr6 59068260 59068281 -123346961 + AT_rich Low_complexity Low_complexity 1 21 0 356 286 35 23 chr6 59068901 59069072 -123346170 - L1ME LINE L1 -374 5747 5575 417 263 0 76 chr6 59069536 59069599 -123345643 + HAL1 LINE L1 27 93 -2414 690 126 67 82 chr6 59069599 59069734 -123345508 + FLAM_C SINE Alu 1 133 0 417 263 0 76 chr6 59069734 59069841 -123345401 + HAL1 LINE L1 93 184 -2323 297 258 129 49 chr6 59069887 59070050 -123345192 + MIR SINE MIR 86 261 -1 701 289 107 35 chr6 59070192 59070614 -123344628 + HAL1 LINE L1 593 1044 -1463 392 279 8 33 chr6 59070678 59070800 -123344442 - MIR3 SINE MIR -12 196 78 2036 159 40 26 chr6 59070901 59071279 -123343963 + L1MA7 LINE L1 5905 6287 -4 879 167 151 21 chr6 59071304 59071496 -123343746 + AluJb SINE Alu 86 302 -10 382 251 196 18 chr6 59071571 59071734 -123343508 - MIR SINE MIR -56 206 15 1459 156 78 26 chr6 59071811 59072119 -123343123 - MER33 DNA MER1_type 0 324 1 216 0 0 0 chr6 59072815 59072839 -123342403 + (T)n Simple_repeat Simple_repeat 1 24 0 454 257 7 52 chr6 59073381 59073517 -123341725 + MER94 DNA DNA 1 130 -4 236 211 18 35 chr6 59074182 59074239 -123341003 + L2 LINE L2 3207 3262 -10 319 215 189 66 chr6 59074571 59074618 -123340624 + MIR SINE MIR 6 46 -216 1721 126 98 7 chr6 59074618 59074903 -123340339 - AluSx SINE Alu -1 311 1 319 215 189 66 chr6 59074903 59075083 -123340159 + MIR SINE MIR 46 261 -1 586 229 20 26 chr6 59075301 59075454 -123339788 + MER117 DNA MER1_type 39 190 -7 2127 100 11 4 chr6 59075874 59076184 -123339058 + AluSq SINE Alu 1 312 0 254 203 14 68 chr6 59076909 59076983 -123338259 - L1ME4a LINE L1 -59 6062 5993 991 179 23 6 chr6 59078035 59078208 -123337034 - MLT1D LTR MaLR -329 176 1 1783 192 0 0 chr6 59078768 59079060 -123336182 + AluJb SINE Alu 5 296 -16 683 285 98 0 chr6 59079091 59079284 -123335958 - MIR SINE MIR -44 218 7 427 308 18 29 chr6 59079444 59079602 -123335640 + MIR SINE MIR 29 183 -62 616 146 0 0 chr6 59079667 59079756 -123335486 - AluJb SINE Alu -13 299 211 489 271 104 63 chr6 59080091 59080408 -123334834 - MER102a DNA MER1_type 0 330 1 284 298 97 26 chr6 59081375 59081489 -123333753 - MIR3 SINE MIR -77 131 10 1832 215 101 39 chr6 59081824 59082367 -123332875 - MER34B LTR ERV1 -19 546 1 250 208 21 0 chr6 59082424 59082472 -123332770 + MER57A LTR ERV1 295 343 -60 276 163 0 0 chr6 59082624 59082667 -123332575 - MIR SINE MIR -109 153 111 650 316 26 17 chr6 59082675 59082906 -123332336 - MIR SINE MIR -17 245 13 446 319 22 15 chr6 59082931 59083066 -123332176 - L2 LINE L2 -37 3235 3100 1304 223 67 82 chr6 59083081 59083620 -123331622 + MER34B LTR ERV1 35 565 0 1312 294 116 14 chr6 59084158 59084710 -123330532 - MLT2F LTR ERVL -53 610 3 26 0 0 0 chr6 59135116 59135142 -123280100 + AT_rich Low_complexity Low_complexity 1 26 0 469 268 85 66 chr6 59135160 59135576 -123279666 + L1 LINE L1 3036 3463 -2683 1795 164 24 3 chr6 59135631 59135918 -123279324 + AluJo SINE Alu 1 293 -19 21 0 0 0 chr6 59135943 59135964 -123279278 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 59136539 59136571 -123278671 + AT_rich Low_complexity Low_complexity 1 32 0 1976 145 18 68 chr6 59136580 59136906 -123278336 + L1MB2 LINE L1 5797 6102 -69 1758 154 11 18 chr6 59136906 59137215 -123278027 + AluJb SINE Alu 1 307 0 1976 145 18 68 chr6 59137215 59137281 -123277961 + L1MB2 LINE L1 6102 6170 -1 2124 114 7 7 chr6 59137418 59137716 -123277526 - AluSx SINE Alu -14 298 1 293 254 0 69 chr6 59137856 59137986 -123277256 - L2 LINE L2 -14 3258 3138 403 258 161 16 chr6 59138781 59138967 -123276275 - MIR SINE MIR 0 262 50 2304 112 0 0 chr6 59139010 59139305 -123275937 + AluSg SINE Alu 1 295 -15 2109 110 17 3 chr6 59140621 59140913 -123274329 - AluSg SINE Alu -14 296 1 1174 95 12 12 chr6 59140915 59141083 -123274159 - L1PA10 LINE L1 -2 6166 5999 607 129 0 143 chr6 59141664 59141804 -123273438 + AluJo/FLAM SINE Alu 12 131 -181 2260 126 0 0 chr6 59141806 59142116 -123273126 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr6 59142204 59142230 -123273012 + AT_rich Low_complexity Low_complexity 1 26 0 244 234 0 0 chr6 59142236 59142283 -123272959 - LTR51 LTR ERV1 -48 623 577 2382 101 3 0 chr6 59142374 59142680 -123272562 + AluSp SINE Alu 1 307 -6 1136 134 39 0 chr6 59142936 59143115 -123272127 + AluSg/x SINE Alu 117 302 -10 300 271 12 0 chr6 59143319 59143404 -123271838 + CT-rich Low_complexity Low_complexity 1 86 0 2268 110 7 0 chr6 59145146 59145447 -123269795 - AluSx SINE Alu -9 303 1 276 30 0 0 chr6 59145941 59145974 -123269268 + (CA)n Simple_repeat Simple_repeat 1 33 0 2264 91 0 42 chr6 59146374 59146681 -123268561 - AluSg SINE Alu -16 294 1 251 323 94 24 chr6 59146986 59147113 -123268129 + MIR3 SINE MIR 22 157 -51 259 200 27 160 chr6 59147684 59147834 -123267408 + MLT1L LTR MaLR 45 174 -441 487 261 111 30 chr6 59147907 59148106 -123267136 + MLT1L LTR MaLR 349 563 -52 1294 214 19 26 chr6 59148207 59148515 -123266727 - MLT1F LTR MaLR -12 530 225 2525 168 31 31 chr6 59148517 59148705 -123266537 - MER74A LTR ERVL -3 555 368 2125 127 0 3 chr6 59148705 59148996 -123266246 - AluSc SINE Alu -19 290 1 2525 168 31 31 chr6 59148996 59149288 -123265954 - MER74A LTR ERVL -189 369 75 911 237 74 9 chr6 59149322 59149537 -123265705 - MLT1F LTR MaLR -313 229 1 433 248 0 17 chr6 59149615 59149732 -123265510 - LTR67 LTR ERVL -14 543 429 2001 139 0 7 chr6 59150361 59150648 -123264594 + AluSx SINE Alu 1 285 -27 1049 63 0 8 chr6 59150811 59150937 -123264305 - AluSc SINE Alu -78 231 107 901 206 22 0 chr6 59151247 59151431 -123263811 - MER5A DNA MER1_type -1 188 1 1912 122 0 7 chr6 59151498 59151789 -123263453 - AluSq SINE Alu 0 330 42 765 307 77 17 chr6 59151900 59152252 -123262990 - MLT1J LTR MaLR -23 488 116 302 295 29 0 chr6 59152518 59152623 -123262619 + MER103 DNA DNA 56 163 -3 2196 101 34 3 chr6 59152917 59153214 -123262028 - AluSx SINE Alu -6 306 1 248 125 25 0 chr6 59153364 59153404 -123261838 + Alu SINE Alu 109 149 -17 844 107 0 0 chr6 59153421 59153533 -123261709 - AluSq/x SINE Alu -201 112 1 844 170 105 29 chr6 59153537 59153708 -123261534 - MLT1E2 LTR MaLR -440 186 3 946 184 32 32 chr6 59154368 59154586 -123260656 - MER20 DNA MER1_type -1 218 1 973 196 0 0 chr6 59155982 59156145 -123259097 - AluJb SINE Alu -17 295 133 2479 185 60 18 chr6 59156154 59156769 -123258473 - Zaphod DNA AcHobo -105 3926 3286 1032 257 125 5 chr6 59156762 59156854 -123258388 - Zaphod DNA AcHobo -3348 683 603 * 2314 92 34 0 chr6 59156854 59157147 -123258095 + AluSg SINE Alu 1 303 -7 1032 257 125 5 chr6 59157147 59157520 -123257722 - Zaphod DNA AcHobo -3428 603 114 763 223 52 61 chr6 59157608 59158021 -123257221 + MLT1D LTR MaLR 1 364 -1 789 249 0 11 chr6 59158081 59158270 -123256972 - MIR SINE MIR -28 234 48 203 147 0 0 chr6 59158906 59158940 -123256302 + (TG)n Simple_repeat Simple_repeat 1 34 0 384 77 0 0 chr6 59160186 59160238 -123255004 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 258 255 186 25 chr6 59160280 59160441 -123254801 - L2 LINE L2 -82 3231 3045 393 187 13 0 chr6 59160452 59160527 -123254715 + MER53 DNA DNA 2 77 -112 2441 117 8 0 chr6 59160539 59160906 -123254336 - L1PB1 LINE L1 0 6151 5782 323 276 23 0 chr6 59160906 59160993 -123254249 - L1MC4 LINE L1 -1340 6702 6614 2215 107 3 13 chr6 59161010 59161319 -123253923 - AluSx SINE Alu -6 306 1 3143 69 12 7 chr6 59161322 59161740 -123253502 - L1P5 LINE L1 -364 5787 5368 567 147 29 0 chr6 59161750 59161852 -123253390 - MER53 DNA DNA -62 127 23 288 265 62 90 chr6 59161903 59162114 -123253128 - L2 LINE L2 -346 2968 2764 1971 146 3 7 chr6 59163006 59163307 -123251935 - AluJb SINE Alu -10 302 3 284 225 90 11 chr6 59163349 59163438 -123251804 - MIR SINE MIR -116 146 51 487 250 26 32 chr6 59163689 59163845 -123251397 - L1ME4a LINE L1 -11 6110 5956 22 0 0 0 chr6 59164037 59164059 -123251183 + AT_rich Low_complexity Low_complexity 1 22 0 2289 112 0 31 chr6 59164066 59164388 -123250854 + AluSx SINE Alu 1 312 0 303 281 201 23 chr6 59165605 59165941 -123249301 - L2 LINE L2 -179 3134 2741 2088 136 29 29 chr6 59166443 59166818 -123248424 + THE1C LTR MaLR 1 375 0 336 300 75 25 chr6 59166871 59166991 -123248251 - L2 LINE L2 -1 3271 3146 545 292 124 24 chr6 59167308 59167606 -123247636 + HsTC2 DNA Tc2 492 819 -1079 2153 128 0 0 chr6 59167982 59168278 -123246964 - AluSx SINE Alu -16 296 1 313 220 0 0 chr6 59168673 59168732 -123246510 + MIR SINE MIR 88 146 -116 242 252 160 0 chr6 59169602 59169721 -123245521 - MIR3 SINE MIR -6 202 65 407 293 84 0 chr6 59169995 59170162 -123245080 - MIR SINE MIR -19 243 63 2121 109 3 17 chr6 59170419 59170712 -123244530 - AluSx SINE Alu -23 289 1 2290 75 10 39 chr6 59170870 59171175 -123244067 + AluY SINE Alu 2 297 -14 206 333 17 61 chr6 59171862 59172042 -123243200 + L2 LINE L2 2925 3096 -176 203 374 82 15 chr6 59172895 59173101 -123242141 + L3 LINE CR1 208 427 -1150 413 230 135 65 chr6 59173167 59173367 -123241875 - MIR SINE MIR -26 236 23 22 0 0 0 chr6 59173648 59173670 -123241572 + AT_rich Low_complexity Low_complexity 1 22 0 1079 195 5 24 chr6 59174367 59174577 -123240665 - AluJo SINE Alu -19 293 88 1001 166 0 24 chr6 59174578 59174747 -123240495 + MER58B DNA MER1_type 171 335 -6 206 317 125 17 chr6 59178091 59178211 -123237031 + L2 LINE L2 3140 3272 0 2281 89 0 0 chr6 59178946 59179227 -123236015 + AluSc SINE Alu 1 281 -28 615 183 38 30 chr6 59179304 59179435 -123235807 - FLAM_A SINE Alu -1 132 1 882 138 0 0 chr6 59179982 59180112 -123235130 - FLAM_C SINE Alu -2 131 2 183 299 69 11 chr6 59180635 59180722 -123234520 + MIR SINE MIR 18 109 -99 224 273 91 0 chr6 59181683 59181782 -123233460 + MIR SINE MIR 26 133 -75 784 179 89 34 chr6 59184302 59184481 -123230761 - MER5A DNA MER1_type 0 189 1 337 234 11 32 chr6 59185142 59185236 -123230006 + MIR3 SINE MIR 89 180 -28 198 351 140 29 chr6 59186516 59186687 -123228555 + L2 LINE L2 2724 2913 -401 257 381 60 8 chr6 59186702 59186836 -123228406 + MIR3 SINE MIR 5 145 -63 1920 153 0 7 chr6 59188277 59188571 -123226671 - AluJb SINE Alu -20 292 1 210 268 170 0 chr6 59189047 59189159 -123226083 - MIR3 SINE MIR -48 160 30 228 274 0 53 chr6 59190772 59190867 -123224375 + L1MEd LINE L1 3 92 -6027 343 254 145 15 chr6 59191250 59191554 -123223688 + L1MEd LINE L1 895 1628 -862 1810 174 0 0 chr6 59191700 59191975 -123223267 + AluJo SINE Alu 1 275 -37 22 0 0 0 chr6 59191978 59192000 -123223242 + AT_rich Low_complexity Low_complexity 1 22 0 5714 144 30 27 chr6 59192281 59193243 -123221999 + Tigger1 DNA MER2_type 1 965 -1453 1753 187 10 7 chr6 59193272 59193582 -123221660 - AluJo SINE Alu -1 311 1 977 151 48 21 chr6 59193582 59193768 -123221474 + Tigger1 DNA MER2_type 2223 2413 -5 1891 157 0 16 chr6 59193956 59194262 -123220980 + AluJo SINE Alu 1 301 -11 26 82 0 0 chr6 59194690 59194751 -123220491 + AT_rich Low_complexity Low_complexity 1 61 0 1779 158 42 0 chr6 59196460 59196745 -123218497 + AluJb SINE Alu 1 297 -15 2327 83 7 3 chr6 59197113 59197415 -123217827 + AluSq SINE Alu 1 303 -10 25 31 0 0 chr6 59199643 59199675 -123215567 + AT_rich Low_complexity Low_complexity 1 32 0 2180 139 0 0 chr6 59200185 59200494 -123214748 + AluSx SINE Alu 1 309 -3 2184 135 0 0 chr6 59200982 59201294 -123213948 - AluSx SINE Alu 0 312 1 1055 274 105 26 chr6 59201862 59202329 -123212913 + MLT1L LTR MaLR 94 597 -18 379 337 88 0 chr6 59202407 59202612 -123212630 - L1MC/D LINE L1 -2032 5776 5554 21 57 0 0 chr6 59203864 59203899 -123211343 + AT_rich Low_complexity Low_complexity 1 35 0 354 254 24 53 chr6 59204094 59204263 -123210979 - MER112 DNA MER1_type -89 171 8 2438 181 96 22 chr6 59204963 59205472 -123209770 + MER44D DNA MER2_type 1 602 -3 542 217 160 34 chr6 59206128 59206316 -123208926 + MIR SINE MIR 42 252 -10 388 215 54 32 chr6 59206428 59206521 -123208721 - MER20B DNA MER1_type -631 152 58 377 297 173 26 chr6 59207994 59208381 -123206861 - L2 LINE L2 -1 3312 2869 186 43 0 0 chr6 59212059 59212082 -123203160 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 288 0 0 0 chr6 59212113 59212145 -123203097 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 6222 66 25 62 chr6 59212145 59213941 -123201301 - SVA Other Other -520 1363 1 505 15 0 102 chr6 59213941 59214078 -123201164 + (GGGAGA)n Simple_repeat Simple_repeat 1 123 0 269 290 50 30 chr6 59214775 59214875 -123200367 - L2 LINE L2 0 3272 3171 1131 191 68 0 chr6 59214934 59215169 -123200073 + MIR SINE MIR 12 262 0 232 305 80 46 chr6 59215992 59216143 -123199099 + L2 LINE L2 3117 3272 0 354 302 107 13 chr6 59216191 59216350 -123198892 - MER5B DNA MER1_type -4 174 1 252 287 96 21 chr6 59216839 59216933 -123198309 + L2 LINE L2 3160 3260 -12 180 0 0 0 chr6 59216974 59216994 -123198248 + (CTG)n Simple_repeat Simple_repeat 3 22 0 1523 210 135 57 chr6 59217196 59217691 -123197551 + MLT1F LTR MaLR 1 534 -8 282 283 26 118 chr6 59218007 59218078 -123197164 - MIR SINE MIR -114 148 97 422 298 58 0 chr6 59218078 59218182 -123197060 + MER81 DNA DNA 1 110 -4 282 283 26 118 chr6 59218182 59218262 -123196980 - MIR SINE MIR -165 97 11 760 129 8 40 chr6 59218293 59218417 -123196825 - FLAM_C SINE Alu -13 120 1 3255 176 38 8 chr6 59218955 59219562 -123195680 + L1MB7 LINE L1 5445 6069 -115 265 220 110 20 chr6 59219633 59219733 -123195509 + L1ME LINE L1 5627 5735 -386 2826 174 109 10 chr6 59219835 59220423 -123194819 + L1MD1 LINE L1 5597 6242 0 1712 141 37 40 chr6 59221040 59221338 -123193904 - AluJo SINE Alu -15 297 1 219 265 29 44 chr6 59222205 59222273 -123192969 - L2 LINE L2 -6 3266 3200 23 33 0 0 chr6 59222385 59222415 -123192827 + AT_rich Low_complexity Low_complexity 1 30 0 1639 191 34 48 chr6 59222708 59223086 -123192156 - MLT1A2 LTR MaLR -1 373 1 556 224 7 35 chr6 59223643 59223786 -123191456 + MIR SINE MIR 84 222 -40 188 291 94 82 chr6 59223859 59224103 -123191139 - L2 LINE L2 -47 3266 3020 4124 65 2 2 chr6 59224986 59225481 -123189761 + L1PA4 LINE L1 5658 6152 -3 260 125 0 18 chr6 59225484 59225540 -123189702 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 209 310 305 0 chr6 59225622 59225822 -123189420 - MIR SINE MIR 0 262 2 207 240 209 101 chr6 59225988 59226117 -123189125 + MIR SINE MIR 85 227 -35 22 80 0 0 chr6 59226124 59226174 -123189068 + AT_rich Low_complexity Low_complexity 1 50 0 1280 162 0 26 chr6 59226212 59226446 -123188796 + AluJb SINE Alu 85 312 0 991 152 73 131 chr6 59226499 59226678 -123188564 - Charlie5 DNA MER1_type -94 2530 2342 2521 43 40 0 chr6 59226678 59226977 -123188265 + AluYa5 SINE Alu 1 311 0 991 152 73 131 chr6 59226977 59227207 -123188035 - Charlie5 DNA MER1_type -282 2342 1 1861 150 7 10 chr6 59227708 59228001 -123187241 + AluSx SINE Alu 1 292 -20 2244 73 45 0 chr6 59228011 59228299 -123186943 - AluY SINE Alu -10 301 1 491 259 32 25 chr6 59229077 59229235 -123186007 - L1ME LINE L1 -350 5771 5613 314 291 47 0 chr6 59230642 59230728 -123184514 - MIR SINE MIR -1 261 172 186 267 22 0 chr6 59230761 59230806 -123184436 - MIR SINE MIR -200 62 17 2101 81 44 14 chr6 59231253 59231550 -123183692 - AluSp SINE Alu -7 306 1 2238 131 0 3 chr6 59231646 59231959 -123183283 + AluSx SINE Alu 1 312 0 1960 140 13 3 chr6 59232070 59232378 -123182864 + AluJb SINE Alu 1 311 -1 1915 144 39 21 chr6 59235046 59235379 -123179863 + L1MB5 LINE L1 5835 6173 -1 513 268 64 6 chr6 59235829 59235986 -123179256 - MER3 DNA MER1_type -1 208 43 312 91 0 0 chr6 59236858 59236902 -123178340 + (CTA)n Simple_repeat Simple_repeat 3 46 0 505 172 69 59 chr6 59236944 59237147 -123178095 + Charlie1 DNA MER1_type 2523 2727 -34 2146 141 3 0 chr6 59237218 59237530 -123177712 + AluSq SINE Alu 1 313 0 2687 138 74 40 chr6 59237695 59238194 -123177048 - Tigger3b DNA MER2_type -5 1227 712 967 131 88 0 chr6 59238194 59238354 -123176888 - FAM SINE Alu -3 46 1 3434 145 97 24 chr6 59238363 59238732 -123176510 - Tigger3b DNA MER2_type -2309 719 378 1608 194 14 0 chr6 59238732 59239021 -123176221 + AluJo SINE Alu 9 301 -11 3434 145 97 24 chr6 59239021 59239320 -123175922 - Tigger3b DNA MER2_type -2650 378 2 2233 171 74 17 chr6 59239465 59239868 -123175374 - MSTB LTR MaLR 0 426 1 240 295 11 21 chr6 59240235 59240330 -123174912 + GA-rich Low_complexity Low_complexity 1 94 0 21 0 0 0 chr6 59241486 59241507 -123173735 + AT_rich Low_complexity Low_complexity 1 21 0 29 70 0 0 chr6 59242083 59242140 -123173102 + AT_rich Low_complexity Low_complexity 1 57 0 307 279 125 29 chr6 59242625 59242761 -123172481 + MIR3 SINE MIR 37 185 -23 607 207 80 48 chr6 59243392 59243580 -123171662 + MLT1J LTR MaLR 69 262 -249 312 213 66 118 chr6 59243635 59243771 -123171471 + MLT1J LTR MaLR 383 511 0 1548 195 0 11 chr6 59244054 59244331 -123170911 + AluJb SINE Alu 1 274 -38 185 294 0 0 chr6 59245364 59245415 -123169827 - MIR SINE MIR -34 228 178 4140 116 66 124 chr6 59247196 59247958 -123167284 + Tigger3(Golem) DNA MER2_type 2 807 -2222 601 188 129 0 chr6 59247958 59248059 -123167183 - FLAM_C SINE Alu -24 119 6 4140 116 66 124 chr6 59248059 59248502 -123166740 + Tigger3(Golem) DNA MER2_type 807 3028 -1 932 222 72 9 chr6 59249080 59249301 -123165941 + MIR SINE MIR 1 235 -27 371 264 71 45 chr6 59249309 59249464 -123165778 - L1MC4a LINE L1 -1960 5848 5690 257 258 33 83 chr6 59249550 59249670 -123165572 - MIR SINE MIR -90 172 59 1921 176 0 0 chr6 59250883 59251189 -123164053 - AluJb SINE Alu -6 306 1 304 202 143 0 chr6 59251694 59251778 -123163464 - HsTC2 DNA Tc2 -1802 96 1 281 284 200 19 chr6 59252238 59252393 -123162849 + MIR SINE MIR 80 262 0 296 103 23 3 chr6 59252996 59253047 -123162195 + MLT1L LTR MaLR 538 608 0 233 178 87 189 chr6 59253514 59253571 -123161671 + MIR SINE MIR 79 140 -122 4175 58 2 0 chr6 59253571 59254070 -123161172 - L1PA8 LINE L1 -1 6171 5672 233 178 87 189 chr6 59254070 59254197 -123161045 + MIR SINE MIR 140 244 -18 201 318 149 7 chr6 59254601 59254749 -123160493 - MIR SINE MIR -10 252 84 2561 81 0 0 chr6 59257531 59257841 -123157401 - AluSx SINE Alu -2 310 1 242 308 0 15 chr6 59258582 59258647 -123156595 - Charlie7 DNA MER1_type -2548 64 1 326 301 35 9 chr6 59258656 59258769 -123156473 + L2 LINE L2 3198 3313 0 2153 92 21 7 chr6 59259441 59259751 -123155491 - AluSq SINE Alu 0 314 1 282 368 34 0 chr6 59260410 59260527 -123154715 + L2 LINE L2 3151 3271 -1 2560 276 57 31 chr6 59260635 59261773 -123153469 + L2 LINE L2 2155 3305 -8 329 326 11 0 chr6 59262243 59262332 -123152910 - MIR SINE MIR -128 134 45 1235 223 44 27 chr6 59263741 59264037 -123151205 - AluJb SINE Alu -11 301 1 2077 141 0 0 chr6 59264067 59264365 -123150877 - AluSx SINE Alu -14 298 1 271 254 172 37 chr6 59264512 59264646 -123150596 + L2 LINE L2 3152 3303 -10 1232 267 78 80 chr6 59264780 59265319 -123149923 + MLT1E LTR MaLR 4 592 -1 237 309 111 41 chr6 59266233 59266476 -123148766 + L2 LINE L2 2994 3253 -60 891 166 6 0 chr6 59266493 59266650 -123148592 - FRAM SINE Alu -9 167 10 33 43 0 0 chr6 59267085 59267132 -123148110 + GC_rich Low_complexity Low_complexity 1 47 0 281 69 0 69 chr6 59267958 59268016 -123147226 + (A)n Simple_repeat Simple_repeat 1 54 0 296 276 86 46 chr6 59268069 59268221 -123147021 - MIR SINE MIR -71 191 34 1760 137 72 33 chr6 59268223 59268668 -123146574 - MER51A LTR ERV1 -16 618 72 2251 100 3 3 chr6 59268668 59268978 -123146264 - AluSg SINE Alu 0 310 1 1760 137 72 33 chr6 59268978 59269053 -123146189 - MER51A LTR ERV1 -562 72 1 328 295 169 16 chr6 59269806 59270060 -123145182 + L2 LINE L2 2668 2960 -354 6986 154 137 34 chr6 59270145 59271686 -123143556 - pTR5 LTR ERV1 0 2438 740 364 383 85 0 chr6 59271873 59272014 -123143228 + L2 LINE L2 3117 3269 -3 797 192 0 20 chr6 59272134 59272280 -123142962 - FLAM_C SINE Alu 0 143 1 675 142 25 17 chr6 59272304 59272424 -123142818 + MER3 DNA MER1_type 43 163 -46 1048 161 88 35 chr6 59272429 59272657 -123142585 + MER3 DNA MER1_type 2280 2494 -130 3104 126 26 56 chr6 59272657 59272799 -123142443 + L1MB4 LINE L1 5628 5773 -407 1925 134 105 37 chr6 59272799 59272967 -123142275 - THE1C LTR MaLR 0 375 220 180 0 0 0 chr6 59272967 59272987 -123142255 + (GA)n Simple_repeat Simple_repeat 2 21 0 1925 134 105 37 chr6 59272987 59273169 -123142073 - THE1C LTR MaLR -155 220 1 10448 135 6 49 chr6 59273169 59274340 -123140902 - THE1C-int LTR MaLR 0 1580 500 2296 91 0 17 chr6 59274340 59274638 -123140604 - AluSq SINE Alu -20 293 1 10448 135 6 49 chr6 59274638 59275116 -123140126 - THE1C-int LTR MaLR -1080 500 3 3104 126 26 56 chr6 59275116 59275135 -123140107 + L1MB4 LINE L1 5772 5790 -390 2511 90 0 0 chr6 59275135 59275446 -123139796 - AluY SINE Alu 0 311 1 2026 133 63 41 chr6 59275446 59275813 -123139429 - THE1C LTR MaLR 0 375 1 3104 126 26 56 chr6 59275813 59276218 -123139024 + L1MB4 LINE L1 5788 6180 0 1048 161 88 35 chr6 59276218 59276250 -123138992 + MER3 DNA MER1_type 2494 2554 -70 281 103 0 0 chr6 59276266 59276305 -123138937 + THE1-int LTR MaLR 752 790 -790 812 73 28 45 chr6 59276777 59276955 -123138287 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 225 196 0 0 chr6 59276944 59276990 -123138252 + CT-rich Low_complexity Low_complexity 3 48 0 * 1906 155 7 7 chr6 59276990 59277299 -123137943 - AluSx SINE Alu -3 309 1 2334 105 3 0 chr6 59278665 59278971 -123136271 + AluSq SINE Alu 1 307 -6 944 150 0 0 chr6 59279566 59279699 -123135543 + FLAM_A SINE Alu 1 133 0 2452 88 0 0 chr6 59279705 59280013 -123135229 + AluSg SINE Alu 1 308 -2 203 395 23 0 chr6 59280830 59280916 -123134326 + MER5A DNA MER1_type 64 151 -38 255 307 94 0 chr6 59281437 59281564 -123133678 - MIR SINE MIR -53 209 71 387 259 28 9 chr6 59282120 59282228 -123133014 - L2 LINE L2 -1 3312 3203 33 56 0 0 chr6 59283351 59283405 -123131837 + AT_rich Low_complexity Low_complexity 1 54 0 1014 161 6 0 chr6 59284614 59284776 -123130466 - AluSg/x SINE Alu -20 292 130 2151 133 0 0 chr6 59286652 59286954 -123128288 - AluSx SINE Alu -7 305 4 505 336 80 8 chr6 59287383 59287621 -123127621 - MIR SINE MIR 0 262 8 241 301 118 20 chr6 59287975 59288221 -123127021 + L1MC/D LINE L1 3743 4012 -2134 2097 136 0 13 chr6 59288245 59288554 -123126688 - AluSx SINE Alu -7 305 1 2084 104 14 0 chr6 59288586 59288865 -123126377 + AluSp SINE Alu 11 293 -20 302 179 54 0 chr6 59288990 59289046 -123126196 + L2 LINE L2 3251 3309 -4 320 326 90 0 chr6 59289056 59289200 -123126042 + L1MC/D LINE L1 4159 4315 -1831 39824 77 7 9 chr6 59290417 59293393 -123121849 + L1PA6 LINE L1 13 2996 -3158 2530 63 0 0 chr6 59293393 59293695 -123121547 - AluY SINE Alu -9 302 1 39824 77 7 9 chr6 59293695 59296876 -123118366 + L1PA6 LINE L1 2996 6154 0 225 324 135 0 chr6 59297173 59297284 -123117958 + L1MC/D LINE L1 5564 5689 -2119 180 111 0 0 chr6 59297397 59297424 -123117818 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1399 173 98 4 chr6 59297426 59297681 -123117561 - AluSg SINE Alu -31 279 1 222 150 0 0 chr6 59297723 59297763 -123117479 + (CA)n Simple_repeat Simple_repeat 1 40 0 419 252 144 0 chr6 59297814 59297925 -123117317 - FLAM_A SINE Alu -14 128 2 2159 122 3 0 chr6 59298651 59298945 -123116297 - AluSx SINE Alu -17 295 1 287 258 217 8 chr6 59299127 59299247 -123115995 + L1MC/D LINE L1 5701 5845 -1963 1448 158 4 20 chr6 59299652 59299898 -123115344 + L1MA10 LINE L1 5347 5588 -580 4557 160 64 48 chr6 59299905 59300710 -123114532 - MER21A LTR ERV1 -6 925 103 354 23 0 0 chr6 59300710 59300753 -123114489 + (GA)n Simple_repeat Simple_repeat 2 44 0 4557 160 64 48 chr6 59300753 59300834 -123114408 - MER21A LTR ERV1 -828 103 25 336 24 0 0 chr6 59300834 59300875 -123114367 + (TC)n Simple_repeat Simple_repeat 1 41 0 4053 141 33 48 chr6 59300888 59301638 -123113604 + L1MA10 LINE L1 5586 6324 -10 2246 112 0 7 chr6 59301656 59301961 -123113281 + AluSx SINE Alu 1 303 -9 285 274 167 39 chr6 59301982 59302098 -123113144 - L1ME4a LINE L1 -138 5983 5883 1537 185 32 7 chr6 59302098 59302379 -123112863 + AluJo SINE Alu 5 292 -20 285 274 167 39 chr6 59302379 59302466 -123112776 - L1ME4a LINE L1 -238 5883 5754 514 229 0 38 chr6 59302785 59302916 -123112326 + L2 LINE L2 3171 3296 -17 286 293 68 80 chr6 59303415 59303922 -123111320 - L2 LINE L2 -160 3112 2614 2799 181 62 17 chr6 59304735 59305255 -123109987 - MER67A LTR ERV1 0 543 1 3167 222 59 47 chr6 59305996 59307530 -123107712 - L1ME2 LINE L1 0 6164 4615 44551 43 1 5 chr6 59307730 59313905 -123101337 - L1PA4 LINE L1 -1 6154 1 180 242 48 97 chr6 59314292 59314416 -123100826 + L2 LINE L2 2290 2407 -907 454 323 104 100 chr6 59314606 59315610 -123099632 - L2 LINE L2 -1 3271 2242 298 315 83 28 chr6 59316174 59316282 -123098960 - L2 LINE L2 -1 3271 3158 515 267 23 8 chr6 59316291 59316422 -123098820 + MER5B DNA MER1_type 2 134 -44 496 254 39 73 chr6 59316433 59316744 -123098498 - L1MC5 LINE L1 -51 7910 7619 2277 103 3 3 chr6 59316744 59317045 -123098197 - AluSx SINE Alu -9 303 3 496 254 39 73 chr6 59317045 59317201 -123098041 - L1MC5 LINE L1 -342 7619 7459 225 0 0 0 chr6 59317201 59317226 -123098016 + (T)n Simple_repeat Simple_repeat 1 25 0 3817 175 35 106 chr6 59317236 59317743 -123097499 - Tigger5 DNA MER2_type -1260 1063 680 2351 99 0 0 chr6 59317743 59318047 -123097195 + AluSc SINE Alu 1 304 -5 3817 175 35 106 chr6 59318047 59318683 -123096559 - Tigger5 DNA MER2_type -1643 680 1 570 253 36 26 chr6 59318696 59318890 -123096352 + L1MC5 LINE L1 6615 6810 -1151 557 258 17 11 chr6 59318861 59319039 -123096203 + L1MC5 LINE L1 7030 7208 -753 * 1711 180 72 24 chr6 59319484 59319857 -123095385 - MSTD LTR MaLR -4 392 2 443 316 42 0 chr6 59320492 59320685 -123094557 - L1MC/D LINE L1 -2059 5749 5549 283 246 0 0 chr6 59320685 59320746 -123094496 - MER5B DNA MER1_type -116 62 2 478 339 22 6 chr6 59321538 59321721 -123093521 + L2 LINE L2 2877 3062 -251 1104 163 12 98 chr6 59321759 59321981 -123093261 - MER33 DNA MER1_type -2283 302 115 2087 144 20 0 chr6 59321981 59322287 -123092955 - AluSx SINE Alu 0 312 1 1104 163 12 98 chr6 59322287 59322390 -123092852 - MER33 DNA MER1_type -2470 115 5 429 287 43 57 chr6 59322426 59322635 -123092607 + L2 LINE L2 3108 3313 0 269 256 156 11 chr6 59322881 59322971 -123092271 + MIR SINE MIR 13 115 -147 263 337 0 10 chr6 59322970 59323068 -123092174 + MER5A DNA MER1_type 90 186 -3 * 270 281 11 22 chr6 59323190 59323279 -123091963 - 7SK RNA RNA -100 93 6 533 183 0 0 chr6 59323524 59323606 -123091636 - FLAM_A SINE Alu -59 83 2 233 329 0 93 chr6 59323607 59323747 -123091495 + L1MB3 LINE L1 5511 5637 -2171 1480 169 29 73 chr6 59323787 59324200 -123091042 + L1MB3 LINE L1 5785 6179 -4 552 262 43 18 chr6 59324205 59324369 -123090873 + L1MC4a LINE L1 5680 5847 -1961 283 296 0 0 chr6 59324508 59324589 -123090653 + LTR33 LTR ERVL 197 277 -244 568 299 98 57 chr6 59324679 59325390 -123089852 + ERVL LTR ERVL 1248 1970 -3684 752 224 11 29 chr6 59325390 59325564 -123089678 + FRAM SINE Alu 1 168 -8 910 328 40 23 chr6 59325579 59326051 -123089191 + ERVL LTR ERVL 2020 2499 -3265 227 165 71 94 chr6 59326452 59326537 -123088705 + MLT1J LTR MaLR 353 435 -76 1164 137 0 12 chr6 59326537 59326705 -123088537 + AluJo SINE Alu 21 186 -126 1991 316 71 9 chr6 59326870 59327817 -123087425 + ERVL LTR ERVL 3641 4645 -1119 313 391 6 0 chr6 59327885 59328046 -123087196 + ERVL LTR ERVL 4761 4922 -842 445 301 7 0 chr6 59328280 59328433 -123086809 + ERVL LTR ERVL 5227 5380 -384 2208 168 62 19 chr6 59328492 59328961 -123086281 - L1MB7 LINE L1 -14 6170 5682 3445 169 18 37 chr6 59329050 59329432 -123085810 - L1MB7 LINE L1 -493 5691 5303 2173 126 31 0 chr6 59329432 59329726 -123085516 - AluSx SINE Alu -7 305 3 3445 169 18 37 chr6 59329726 59330478 -123084764 - L1MB7 LINE L1 -881 5303 4573 1733 283 36 2 chr6 59330665 59331160 -123084082 + LTR33 LTR ERVL 2 513 -8 1758 162 14 7 chr6 59331363 59331795 -123083447 - AluJb SINE Alu 0 454 21 689 262 171 44 chr6 59331795 59332181 -123083061 - MLT1J LTR MaLR -76 435 1 1455 220 132 20 chr6 59332554 59332995 -123082247 - MLT1E2 LTR MaLR 0 626 137 615 176 0 8 chr6 59333020 59333145 -123082097 + L1 LINE L1 4792 4915 -1231 527 122 0 0 chr6 59333154 59333236 -123082006 - AluS SINE Alu -230 82 1 2082 76 4 4 chr6 59333392 59333656 -123081586 + AluSc SINE Alu 1 264 -45 30 45 0 0 chr6 59333682 59333726 -123081516 + AT_rich Low_complexity Low_complexity 1 44 0 294 271 65 126 chr6 59333791 59334005 -123081237 - MIR SINE MIR -8 254 54 342 261 46 35 chr6 59334053 59334287 -123080955 - L1M4c LINE L1 -4436 2127 1736 262 154 0 0 chr6 59334300 59334339 -123080903 - MIR SINE MIR -138 70 32 426 62 0 0 chr6 59334626 59334690 -123080552 + L1PA2 LINE L1 6092 6155 0 23 54 0 0 chr6 59335115 59335152 -123080090 + AT_rich Low_complexity Low_complexity 1 37 0 1328 246 125 67 chr6 59335419 59336436 -123078806 - HAL1b LINE L1 -1 1347 272 186 330 47 52 chr6 59336907 59337098 -123078144 - L2 LINE L2 -256 3016 2827 364 308 65 5 chr6 59337379 59337593 -123077649 + L1MA4 LINE L1 5659 5885 -415 * 1393 211 34 31 chr6 59337413 59337830 -123077412 + L1ME1 LINE L1 5697 6114 -52 570 224 46 0 chr6 59337725 59337877 -123077365 + L1MA10 LINE L1 6169 6327 -7 * 236 277 125 9 chr6 59337987 59338099 -123077143 - L2 LINE L2 -1097 2217 2093 1238 256 60 7 chr6 59338108 59338522 -123076720 - L1MC/D LINE L1 -2009 5799 5364 287 302 67 31 chr6 59338547 59338968 -123076274 - L1MC/D LINE L1 -830 5316 4881 788 194 45 124 chr6 59339042 59339397 -123075845 + MLT1A1 LTR MaLR 39 365 0 1583 204 11 14 chr6 59339506 59339854 -123075388 - MLT1A1 LTR MaLR -18 347 1 1796 184 0 13 chr6 59339989 59340304 -123074938 + AluJb SINE Alu 1 311 -1 2342 71 0 3 chr6 59342727 59343021 -123072221 - AluY SINE Alu -18 293 1 180 0 0 0 chr6 59343340 59343360 -123071882 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2398 103 0 0 chr6 59343394 59343704 -123071538 + AluSx SINE Alu 1 310 -2 456 295 23 0 chr6 59343874 59344003 -123071239 - MER94 DNA DNA -2 132 1 24 0 0 0 chr6 59344485 59344509 -123070733 + AT_rich Low_complexity Low_complexity 1 24 0 342 326 35 42 chr6 59344611 59344755 -123070487 + MIR3 SINE MIR 2 144 -64 610 270 108 25 chr6 59344773 59344987 -123070255 - MIR SINE MIR -10 252 34 601 299 137 27 chr6 59345000 59345335 -123069907 + LTR33 LTR ERVL 40 411 -110 356 305 109 70 chr6 59345649 59346006 -123069236 + L2 LINE L2 2924 3294 -19 1861 156 10 3 chr6 59346929 59347218 -123068024 - AluJb SINE Alu -21 291 1 23 68 0 0 chr6 59348329 59348373 -123066869 + AT_rich Low_complexity Low_complexity 1 44 0 705 270 95 8 chr6 59349242 59349485 -123065757 - L1ME LINE L1 -375 5746 5526 815 272 97 26 chr6 59349485 59349867 -123065375 - MLT1I LTR MaLR 0 409 1 705 270 95 8 chr6 59349867 59350046 -123065196 - L1ME LINE L1 -595 5526 5283 249 224 0 0 chr6 59350213 59350271 -123064971 + MLT1H1 LTR MaLR 21 78 -464 324 246 190 39 chr6 59350371 59350676 -123064566 + MLT1H1 LTR MaLR 168 518 -37 524 243 112 40 chr6 59350836 59350988 -123064254 - MIR SINE MIR -99 163 1 2372 79 10 0 chr6 59351744 59352047 -123063195 + AluSp SINE Alu 1 306 -7 265 293 10 20 chr6 59352242 59352341 -123062901 + HAL1 LINE L1 14 111 -2396 2537 138 7 16 chr6 59353136 59353565 -123061677 + MSTB1 LTR MaLR 1 425 -7 197 206 0 29 chr6 59353571 59353639 -123061603 + (CATA)n Simple_repeat Simple_repeat 2 67 0 352 339 136 0 chr6 59353744 59353921 -123061321 + L1M4 LINE L1 4819 5019 -1127 207 236 0 0 chr6 59354497 59354569 -123060673 + (TA)n Simple_repeat Simple_repeat 2 73 0 309 100 0 0 chr6 59354572 59354622 -123060620 - MSTB1 LTR MaLR -13 419 370 271 235 84 19 chr6 59355281 59355428 -123059814 + L1M2 LINE L1 5314 5443 -857 1448 166 15 41 chr6 59356324 59356595 -123058647 - AluJo SINE Alu -15 297 34 367 231 261 0 chr6 59356812 59356946 -123058296 - MIR SINE MIR -13 249 81 215 395 57 8 chr6 59357046 59357170 -123058072 + L2 LINE L2 2643 2772 -542 870 181 28 23 chr6 59357181 59357358 -123057884 + MER5A DNA MER1_type 3 180 -9 936 266 4 30 chr6 59357489 59357722 -123057520 + MIR SINE MIR 2 228 -34 2359 103 0 0 chr6 59357722 59358022 -123057220 + AluSx SINE Alu 1 300 -12 1066 227 177 35 chr6 59358073 59358496 -123056746 - MLT1D LTR MaLR 0 505 23 928 114 0 0 chr6 59358499 59358622 -123056620 + FLAM_C SINE Alu 5 127 -6 257 284 17 26 chr6 59358699 59358815 -123056427 + L2 LINE L2 2970 3084 -188 285 167 0 0 chr6 59358821 59358875 -123056367 + (CA)n Simple_repeat Simple_repeat 1 54 0 5335 139 35 51 chr6 59358877 59360256 -123054986 - L1MC2 LINE L1 -22 6322 4987 2004 141 0 7 chr6 59361754 59362044 -123053198 + AluSx SINE Alu 4 291 -21 2205 118 0 3 chr6 59362216 59362522 -123052720 - AluSx SINE Alu -7 305 1 222 37 0 0 chr6 59363014 59363041 -123052201 + (CA)n Simple_repeat Simple_repeat 1 27 0 2142 158 98 13 chr6 59363952 59364400 -123050842 - L1MB5 LINE L1 0 6174 5689 562 100 0 0 chr6 59364869 59364949 -123050293 - MADE1 DNA Mariner 0 80 1 232 314 76 17 chr6 59365143 59365220 -123050022 + MIR SINE MIR 127 251 -11 186 244 0 0 chr6 59365220 59365261 -123049981 + L2 LINE L2 3215 3255 -17 435 238 210 0 chr6 59366497 59366640 -123048602 + MIR SINE MIR 30 202 -60 909 214 18 32 chr6 59367193 59367413 -123047829 + MLT1C LTR MaLR 251 467 0 784 178 57 0 chr6 59367553 59367710 -123047532 + L1 LINE L1 6 171 -7394 * 6304 154 6 14 chr6 59367692 59368632 -123046610 + L1 LINE L1 5041 5970 -1595 1799 166 3 26 chr6 59368632 59368945 -123046297 + AluSx SINE Alu 1 306 -6 6304 154 6 14 chr6 59368945 59369191 -123046051 + L1 LINE L1 5970 6217 -1348 1396 121 0 0 chr6 59369191 59369402 -123045840 + L1MA3 LINE L1 6090 6304 -1 271 183 83 0 chr6 59369431 59369491 -123045751 - MER53 DNA DNA -124 65 1 207 0 0 0 chr6 59370143 59370166 -123045076 + (CA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr6 59370183 59370215 -123045027 + AT_rich Low_complexity Low_complexity 1 32 0 184 255 85 21 chr6 59370638 59370732 -123044510 + L2 LINE L2 1802 1901 -1413 294 286 0 12 chr6 59370743 59370827 -123044415 + MER94 DNA DNA 25 107 -27 721 158 9 0 chr6 59371148 59371262 -123043980 + FLAM_C SINE Alu 3 117 -16 189 74 0 0 chr6 59371266 59371293 -123043949 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 424 234 63 9 chr6 59371297 59371408 -123043834 - MER45 DNA AcHobo -836 117 1 2267 115 0 19 chr6 59371500 59371814 -123043428 + AluSg SINE Alu 1 308 -2 2172 133 3 0 chr6 59372097 59372406 -123042836 - AluSx SINE Alu -2 310 1 1146 138 0 0 chr6 59372691 59372865 -123042377 - MER2 DNA MER2_type -170 175 2 231 287 0 0 chr6 59372869 59372963 -123042279 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 1049 294 53 26 chr6 59373065 59373720 -123041522 - L2 LINE L2 -3 3310 2770 373 238 12 0 chr6 59374787 59374867 -123040375 - L2 LINE L2 -1 3312 3232 1452 92 65 5 chr6 59374990 59375207 -123040035 - MER30 DNA MER1_type 0 230 1 20127 139 13 43 chr6 59375322 59377276 -123037966 - L1MA3 LINE L1 0 7724 5714 1993 151 3 0 chr6 59377276 59377568 -123037674 + AluSx SINE Alu 1 293 -19 20127 139 13 43 chr6 59377568 59383413 -123031829 - L1MA3 LINE L1 -2010 5714 7 2105 197 21 19 chr6 59383553 59384019 -123031223 - MLT1C LTR MaLR 0 467 1 522 222 16 8 chr6 59384060 59384186 -123031056 + MER97b DNA MER1_type? 50 176 -877 2281 149 3 10 chr6 59384242 59384632 -123030610 - MLT1B LTR MaLR -3 387 1 749 34 0 0 chr6 59385014 59385130 -123030112 + AluY SINE Alu 193 308 0 40 0 0 0 chr6 59385231 59385271 -123029971 + AT_rich Low_complexity Low_complexity 1 40 0 396 284 75 69 chr6 59385505 59385984 -123029258 - L1ME4a LINE L1 -48 6073 5592 2289 119 0 0 chr6 59386169 59386480 -123028762 - AluSx SINE Alu -1 311 1 1768 152 55 18 chr6 59386516 59386898 -123028344 - L1MB2 LINE L1 -3 6168 5773 4849 119 11 9 chr6 59386929 59387676 -123027566 - L1PA15 LINE L1 0 6165 5418 249 230 15 0 chr6 59387677 59387756 -123027486 - L1ME4a LINE L1 -1563 4583 4504 320 206 62 31 chr6 59387766 59387863 -123027379 - L1MB2 LINE L1 -2453 5355 5256 2126 102 4 0 chr6 59387953 59388228 -123027014 - AluSx SINE Alu -36 276 1 835 232 137 17 chr6 59388341 59388574 -123026668 - MIR SINE MIR 0 262 2 7005 46 16 0 chr6 59388664 59389857 -123025385 - L1PA7 LINE L1 -6 6148 4944 22 35 0 0 chr6 59390798 59390827 -123024415 + AT_rich Low_complexity Low_complexity 1 29 0 855 181 0 0 chr6 59390838 59391011 -123024231 + FLAM_A SINE Alu 1 173 0 260 297 77 0 chr6 59391179 59391270 -123023972 + L2 LINE L2 3204 3301 -12 23 0 0 0 chr6 59391919 59391942 -123023300 + AT_rich Low_complexity Low_complexity 1 23 0 243 88 0 0 chr6 59393339 59393373 -123021869 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 258 306 185 23 chr6 59393480 59393653 -123021589 + MIR SINE MIR 50 250 -12 294 331 106 19 chr6 59393902 59394055 -123021187 - MIR3 SINE MIR 0 208 39 1858 181 3 10 chr6 59394055 59394365 -123020877 - AluJo SINE Alu 0 312 5 407 282 57 0 chr6 59394471 59394595 -123020647 + MIR SINE MIR 92 222 -40 1800 191 8 20 chr6 59394786 59395178 -123020064 - L1MD2 LINE L1 -1 6358 5972 3074 167 6 43 chr6 59395188 59395842 -123019400 - L1MD2 LINE L1 -355 5887 5258 21998 30 1 1 chr6 59395913 59399337 -123015905 + L1PA4 LINE L1 2726 6152 -3 251 350 7 0 chr6 59399354 59399494 -123015748 + L1MEc LINE L1 1915 2055 -4341 189 0 0 0 chr6 59399521 59399542 -123015700 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 6407 54 1 1 chr6 59399542 59400378 -123014864 - L1PA7 LINE L1 -16 6138 5303 2316 241 64 14 chr6 59400432 59401370 -123013872 + L1MEc LINE L1 2151 3092 -3123 544 333 7 7 chr6 59401592 59401745 -123013497 - MIR3 SINE MIR -19 189 37 430 234 63 109 chr6 59401816 59402119 -123013123 + MLT1K LTR MaLR 283 571 -17 190 356 204 0 chr6 59402507 59402639 -123012603 - MIR SINE MIR -56 206 48 2125 123 45 28 chr6 59402834 59403192 -123012050 + THE1B LTR MaLR 1 364 0 372 246 26 0 chr6 59403291 59403405 -123011837 - L1ME3 LINE L1 -29 6133 6017 1090 148 30 6 chr6 59403437 59403606 -123011636 - AluJo SINE Alu -54 258 86 1208 208 84 9 chr6 59403826 59404158 -123011084 + MLT1A1 LTR MaLR 1 357 -8 375 191 95 12 chr6 59405109 59405193 -123010049 + MER5A DNA MER1_type 16 106 -83 484 203 54 7 chr6 59408217 59408365 -123006877 - MER104 DNA Tc2 -4 176 22 2230 106 0 10 chr6 59409336 59409639 -123005603 - AluSx SINE Alu -12 300 1 363 276 149 27 chr6 59410695 59410916 -123004326 - MIR SINE MIR -12 250 3 1648 176 29 58 chr6 59411452 59411828 -123003414 + MLT1A1 LTR MaLR 1 365 0 306 333 71 44 chr6 59411896 59412079 -123003163 - HAL1b LINE L1 -816 532 345 303 240 168 62 chr6 59412143 59412322 -123002920 - L1MEd LINE L1 -4922 1197 1000 743 164 0 47 chr6 59412470 59412598 -123002644 + FLAM_A SINE Alu 1 122 -11 574 240 24 0 chr6 59412642 59412767 -123002475 - FLAM_A SINE Alu -5 128 1 22 0 0 0 chr6 59414113 59414135 -123001107 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr6 59416088 59416121 -122999121 + AT_rich Low_complexity Low_complexity 1 33 0 466 303 18 42 chr6 59416432 59416597 -122998645 - MER5B DNA MER1_type 0 178 18 2412 83 0 13 chr6 59418058 59418372 -122996870 - AluY SINE Alu -1 310 1 187 306 0 0 chr6 59419367 59419416 -122995826 - L2 LINE L2 -1408 1906 1858 285 343 67 0 chr6 59419494 59419599 -122995643 + L2 LINE L2 3183 3294 -19 2137 125 14 0 chr6 59420368 59420665 -122994577 - AluSx SINE Alu -11 301 1 502 142 0 80 chr6 59420821 59420934 -122994308 - L1MA4 LINE L1 0 6300 6197 280 247 144 24 chr6 59421861 59422031 -122993211 - MIR3 SINE MIR -14 194 10 950 190 89 34 chr6 59423376 59423645 -122991597 + MER33 DNA MER1_type 7 290 -34 240 304 43 0 chr6 59423667 59423736 -122991506 + L2 LINE L2 3012 3083 -189 1780 170 0 31 chr6 59425500 59425817 -122989425 - AluJo SINE Alu -5 307 1 787 165 103 62 chr6 59426163 59426357 -122988885 + MER3 DNA MER1_type 1 202 -7 21 57 0 0 chr6 59426557 59426592 -122988650 + AT_rich Low_complexity Low_complexity 1 35 0 2301 114 0 0 chr6 59426661 59426969 -122988273 - AluSx SINE Alu -2 310 3 2222 122 0 0 chr6 59429580 59429875 -122985367 - AluSx SINE Alu -17 295 1 2419 62 0 3 chr6 59430112 59430403 -122984839 + AluY SINE Alu 1 290 -21 967 232 43 5 chr6 59430543 59430754 -122984488 - MIR SINE MIR -42 220 2 346 204 188 36 chr6 59432567 59432737 -122982505 - MIR SINE MIR -54 208 16 2467 73 0 0 chr6 59434937 59435238 -122980004 + AluY SINE Alu 1 301 -10 334 294 153 89 chr6 59435941 59436223 -122979019 - L2 LINE L2 -1 3271 2972 25 65 0 0 chr6 59436863 59436909 -122978333 + AT_rich Low_complexity Low_complexity 1 46 0 352 235 46 10 chr6 59437434 59437586 -122977656 - MER3 DNA MER1_type -1 208 1 455 283 97 7 chr6 59439434 59439579 -122975663 + MIR SINE MIR 105 262 0 395 252 126 33 chr6 59439627 59439778 -122975464 - MER112 DNA MER1_type -8 252 88 362 271 210 20 chr6 59439867 59440181 -122975061 + L2 LINE L2 2713 3090 -223 2247 114 3 3 chr6 59442207 59442515 -122972727 - AluSq SINE Alu -5 308 1 1027 215 54 70 chr6 59442833 59443131 -122972111 + L1ME1 LINE L1 34 326 -6070 * 1407 209 43 33 chr6 59443128 59443521 -122971721 + L1ME1 LINE L1 4450 4846 -1369 697 211 8 8 chr6 59443522 59443650 -122971592 + FLAM_A SINE Alu 1 128 -5 2033 148 3 3 chr6 59443653 59443964 -122971278 + AluSx SINE Alu 1 311 -1 2526 199 119 58 chr6 59443969 59444885 -122970357 + L1ME1 LINE L1 5278 6230 -5 623 161 0 73 chr6 59445945 59446035 -122969207 + AluJb SINE Alu 198 278 -34 276 53 0 0 chr6 59446035 59446073 -122969169 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 623 161 0 73 chr6 59446073 59446106 -122969136 + AluJb SINE Alu 278 312 0 469 282 58 13 chr6 59446277 59446433 -122968809 - MIR SINE MIR -19 243 81 1057 163 0 35 chr6 59446564 59446736 -122968506 - FRAM SINE Alu 0 166 1 2113 68 0 19 chr6 59446746 59447012 -122968230 - AluY SINE Alu -11 300 40 202 237 92 79 chr6 59447369 59447445 -122967797 + MIR SINE MIR 7 83 -179 517 220 71 116 chr6 59448422 59448610 -122966632 + MER112 DNA MER1_type 3 198 -62 2711 146 36 23 chr6 59448610 59449088 -122966154 + L1MB1 LINE L1 5674 6157 -11 342 0 0 0 chr6 59449088 59449126 -122966116 + (CA)n Simple_repeat Simple_repeat 1 38 0 517 220 71 116 chr6 59449126 59449204 -122966038 + MER112 DNA MER1_type 196 258 -2 2321 89 3 7 chr6 59449353 59449657 -122965585 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr6 59449920 59449941 -122965301 + AT_rich Low_complexity Low_complexity 1 21 0 1606 143 74 0 chr6 59450313 59450571 -122964671 - AluJo SINE Alu -35 277 1 2201 113 17 0 chr6 59451154 59451454 -122963788 + AluSg SINE Alu 1 305 -5 304 253 126 29 chr6 59451523 59451697 -122963545 - L2 LINE L2 0 3313 3123 213 39 0 0 chr6 59453071 59453097 -122962145 + (TCC)n Simple_repeat Simple_repeat 1 26 0 229 286 16 0 chr6 59453906 59453969 -122961273 + MIR SINE MIR 52 115 -147 306 67 0 0 chr6 59454635 59454680 -122960562 + (TG)n Simple_repeat Simple_repeat 1 45 0 250 359 87 0 chr6 59454959 59455062 -122960180 + L2 LINE L2 3145 3256 -16 1513 185 65 30 chr6 59455179 59455688 -122959554 + Charlie5 DNA MER1_type 1 2624 0 21 36 0 0 chr6 59456629 59456657 -122958585 + GC_rich Low_complexity Low_complexity 1 28 0 274 271 205 8 chr6 59457074 59457196 -122958046 - MIR SINE MIR -104 158 13 2435 19 0 0 chr6 59457347 59457614 -122957628 - AluYa5 SINE Alu -6 305 39 243 350 43 25 chr6 59457787 59457950 -122957292 + MIR3 SINE MIR 38 203 -5 191 269 115 66 chr6 59458144 59458326 -122956916 - L2 LINE L2 -1588 1726 1536 2286 90 7 3 chr6 59458523 59458822 -122956420 - AluSx SINE Alu -12 300 1 1023 113 0 0 chr6 59458822 59458955 -122956287 - AluSq/x SINE Alu -176 137 5 4251 140 63 83 chr6 59459168 59459252 -122955990 + MER4D LTR ERV1 2 86 -817 2202 116 3 7 chr6 59459252 59459562 -122955680 + AluSx SINE Alu 1 309 -3 4251 140 63 83 chr6 59459562 59460133 -122955109 + MER4D LTR ERV1 86 667 -236 2776 99 3 3 chr6 59460133 59460488 -122954754 + THE1A LTR MaLR 1 355 0 12611 87 8 8 chr6 59460488 59462069 -122953173 + THE1A-int LTR MaLR 1 1580 0 2854 90 3 0 chr6 59462069 59462423 -122952819 + THE1A LTR MaLR 1 355 0 4251 140 63 83 chr6 59462423 59462684 -122952558 + MER4D LTR ERV1 664 903 0 23 0 0 0 chr6 59463187 59463210 -122952032 + AT_rich Low_complexity Low_complexity 1 23 0 376 181 48 24 chr6 59463316 59463399 -122951843 + MER20 DNA MER1_type 133 217 -2 4101 96 54 7 chr6 59463409 59463982 -122951260 + MER4A LTR ERV1 1 600 0 656 121 0 10 chr6 59464240 59464339 -122950903 + MER4A LTR ERV1 1 98 -566 1969 120 9 22 chr6 59464339 59464689 -122950553 + MER4A LTR ERV1 261 664 0 3689 123 178 91 chr6 59464692 59465626 -122949616 + MER4A-int LTR ERV1 1 1015 -5583 213 65 0 0 chr6 59465626 59465657 -122949585 + (TG)n Simple_repeat Simple_repeat 2 32 0 7764 111 47 15 chr6 59465657 59466950 -122948292 + MER4A-int LTR ERV1 1161 2495 -4103 1250 171 80 4 chr6 59466950 59467189 -122948053 - LTR8 LTR ERV1 -434 257 1 3957 128 76 40 chr6 59467189 59467696 -122947546 + MER4A-int LTR ERV1 2737 3224 -3374 231 208 0 38 chr6 59467696 59467719 -122947523 + AluSg/x SINE Alu 115 135 -167 2018 112 0 14 chr6 59467719 59468035 -122947207 + AluSx SINE Alu 1 312 0 3957 128 76 40 chr6 59467749 59468174 -122947068 + MER4A-int LTR ERV1 3224 3451 -3147 2257 111 0 0 chr6 59468174 59468471 -122946771 - AluSg SINE Alu -13 297 1 3957 128 76 40 chr6 59468471 59468711 -122946531 + MER4A-int LTR ERV1 3451 3681 -2917 * 15967 98 47 16 chr6 59468710 59471385 -122943857 + MER4A-int LTR ERV1 3837 6593 -5 653 101 0 10 chr6 59471396 59471495 -122943747 + MER4A LTR ERV1 1 98 -566 1743 134 171 23 chr6 59471495 59471845 -122943397 + MER4A LTR ERV1 261 662 -2 391 270 178 29 chr6 59472067 59472241 -122943001 + MIR SINE MIR 56 255 -7 439 236 56 49 chr6 59473154 59473298 -122941944 - MIR SINE MIR -105 157 13 929 174 67 5 chr6 59473605 59473800 -122941442 - L1PB4 LINE L1 0 6156 5950 1369 109 9 27 chr6 59474687 59474719 -122940523 + AluSg/x SINE Alu 94 125 -185 363 44 0 0 chr6 59474719 59474764 -122940478 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1369 109 9 27 chr6 59474764 59474952 -122940290 + AluSg/x SINE Alu 125 310 0 451 309 43 7 chr6 59475149 59475288 -122939954 - L2 LINE L2 -1 3312 3169 228 333 0 0 chr6 59476555 59476624 -122938618 + GA-rich Low_complexity Low_complexity 2 70 0 2226 111 7 0 chr6 59476770 59477068 -122938174 - AluSx SINE Alu -11 301 2 202 294 29 15 chr6 59477106 59477174 -122938068 + MIR SINE MIR 144 212 -50 302 325 43 27 chr6 59477581 59477769 -122937473 - MIR SINE MIR -3 259 69 540 266 61 84 chr6 59478104 59478264 -122936978 - L2 LINE L2 -8 3305 3143 4172 70 76 64 chr6 59478264 59478808 -122936434 - PABL_B LTR ERV1 0 667 131 1939 110 3 53 chr6 59478808 59479133 -122936109 - AluSx SINE Alu 0 310 1 1937 90 7 24 chr6 59479143 59479462 -122935780 - AluY SINE Alu 0 314 1 4172 70 76 64 chr6 59479462 59479563 -122935679 - PABL_B LTR ERV1 -544 123 1 540 266 61 84 chr6 59479563 59479699 -122935543 - L2 LINE L2 -170 3143 3016 463 196 116 18 chr6 59480627 59480739 -122934503 - FLAM_A SINE Alu -9 133 11 47 70 0 9 chr6 59480751 59480807 -122934435 + AT_rich Low_complexity Low_complexity 1 56 -57 3854 63 53 4 chr6 59480807 59481330 -122933912 + L1PB1 LINE L1 5596 6144 -7 47 70 0 9 chr6 59481330 59481387 -122933855 + AT_rich Low_complexity Low_complexity 56 113 0 869 102 0 0 chr6 59481387 59481505 -122933737 - FLAM_C SINE Alu -15 118 1 321 225 33 83 chr6 59482322 59482442 -122932800 - MIR SINE MIR -117 145 32 2379 100 0 0 chr6 59482782 59483091 -122932151 - AluSx SINE Alu -3 309 1 218 213 0 21 chr6 59483221 59483268 -122931974 + CT-rich Low_complexity Low_complexity 1 46 0 185 296 111 12 chr6 59483297 59483378 -122931864 - L2 LINE L2 -33 3280 3192 1921 183 3 6 chr6 59483690 59484045 -122931197 + MLT1A1 LTR MaLR 12 365 0 1854 151 17 17 chr6 59484186 59484478 -122930764 - AluSx SINE Alu -20 292 1 1838 129 32 26 chr6 59484758 59484885 -122930357 + AluSx SINE Alu 2 127 -185 2400 58 7 0 chr6 59484885 59485210 -122930032 + AluY SINE Alu 1 311 0 1838 129 32 26 chr6 59485210 59485391 -122929851 + AluSx SINE Alu 127 312 0 726 236 23 39 chr6 59485393 59485651 -122929591 - L1MC5 LINE L1 -48 7913 7660 1821 170 0 7 chr6 59485661 59485955 -122929287 + AluJb SINE Alu 1 292 -20 1981 163 3 3 chr6 59486063 59486369 -122928873 + AluJb SINE Alu 1 306 -6 274 178 297 10 chr6 59486426 59486527 -122928715 - LTR50 LTR ERVL -423 372 243 1749 222 25 79 chr6 59486822 59487411 -122927831 - L1ME1 LINE L1 -5 6161 5607 1988 154 0 0 chr6 59487411 59487709 -122927533 - AluSx SINE Alu -14 298 1 1749 222 25 79 chr6 59487709 59487755 -122927487 - L1ME1 LINE L1 -559 5607 5560 1886 165 61 3 chr6 59487777 59488122 -122927120 - MSTB LTR MaLR -36 390 26 727 234 142 0 chr6 59488129 59488334 -122926908 - L1ME1 LINE L1 -601 5565 5332 625 217 14 0 chr6 59488331 59488474 -122926768 + L1M4 LINE L1 2715 2859 -3287 * 304 242 53 15 chr6 59488476 59488608 -122926634 - HAL1 LINE L1 -984 1523 1387 539 335 63 23 chr6 59488618 59488919 -122926323 - L1MEd LINE L1 -4864 1255 943 2050 128 7 0 chr6 59489037 59489319 -122925923 - AluSx SINE Alu -27 285 2 231 114 0 0 chr6 59490253 59490288 -122924954 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 293 323 11 11 chr6 59490810 59490903 -122924339 + L3b LINE CR1 1279 1371 -212 1021 209 11 0 chr6 59491125 59491312 -122923930 - MER5A DNA MER1_type 0 189 1 520 311 16 49 chr6 59491320 59491503 -122923739 - MER5B DNA MER1_type 0 178 2 1108 119 49 7 chr6 59491667 59491893 -122923349 + MSTA LTR MaLR 199 428 0 577 248 80 90 chr6 59492152 59492563 -122922679 + MLT1H LTR MaLR 8 414 -135 24 91 0 0 chr6 59492694 59492760 -122922482 + AT_rich Low_complexity Low_complexity 1 66 0 1744 315 95 43 chr6 59493233 59494644 -122920598 + L2 LINE L2 1787 3264 -8 315 0 0 0 chr6 59494681 59494716 -122920526 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1998 143 0 40 chr6 59494719 59495040 -122920202 - AluJb SINE Alu -4 308 1 722 177 8 8 chr6 59495315 59495445 -122919797 + FLAM_A SINE Alu 1 130 -3 1140 145 45 21 chr6 59495451 59495693 -122919549 - MER33 DNA MER1_type -76 248 1 225 125 83 0 chr6 59495734 59495782 -122919460 + CT-rich Low_complexity Low_complexity 2 53 0 2243 99 3 7 chr6 59496538 59496840 -122918402 - AluSx SINE Alu -11 301 1 316 253 136 32 chr6 59497290 59497444 -122917798 + LTR16C LTR ERVL 311 480 -11 944 336 112 15 chr6 59497470 59498220 -122917022 - L2 LINE L2 -830 2484 1662 2179 109 0 3 chr6 59498671 59498965 -122916277 - AluSx SINE Alu -14 298 6 2006 80 13 25 chr6 59499521 59499638 -122915604 - L1MA4A LINE L1 -6 6297 6180 2472 111 8 16 chr6 59499638 59500016 -122915226 + THE1C LTR MaLR 1 375 0 2006 80 13 25 chr6 59500016 59500212 -122915030 - L1MA4A LINE L1 -123 6180 5988 330 258 97 71 chr6 59500523 59500678 -122914564 + MIR SINE MIR 98 256 -6 38 0 0 0 chr6 59500734 59500772 -122914470 + AT_rich Low_complexity Low_complexity 1 38 0 643 210 0 0 chr6 59500772 59500891 -122914351 - FLAM_A SINE Alu -11 122 4 1402 138 169 27 chr6 59500919 59501180 -122914062 - AluJb SINE Alu -4 298 1 200 308 15 31 chr6 59501321 59501386 -122913856 + MIR SINE MIR 36 99 -109 605 307 57 0 chr6 59502145 59502321 -122912921 - MER91A DNA MER1_type 0 196 11 427 276 47 16 chr6 59503741 59503868 -122911374 + MIR3 SINE MIR 30 160 -48 563 250 87 24 chr6 59503968 59504351 -122910891 + Charlie2 DNA MER1_type 163 598 -2184 1969 143 16 34 chr6 59504555 59504940 -122910302 - MLT1B LTR MaLR 0 390 13 1230 285 51 43 chr6 59504951 59505108 -122910134 - L1MEc LINE L1 -4656 1740 1586 2080 121 3 14 chr6 59505108 59505437 -122909805 - AluSg SINE Alu 0 310 1 1230 285 51 43 chr6 59505437 59505578 -122909664 - L1MEc LINE L1 -4810 1586 1448 2478 139 65 0 chr6 59505578 59505980 -122909262 - MSTA LTR MaLR 0 428 1 1230 285 51 43 chr6 59505980 59506257 -122908985 - L1MEc LINE L1 -4948 1448 1175 1617 183 105 15 chr6 59506257 59506591 -122908651 - MLT1A1 LTR MaLR -1 364 1 1230 285 51 43 chr6 59506591 59506854 -122908388 - L1MEc LINE L1 -5221 1175 893 719 231 12 12 chr6 59506862 59507035 -122908207 + MER58B DNA MER1_type 169 341 0 566 307 50 30 chr6 59507217 59507579 -122907663 - L1MEc LINE L1 -5920 476 108 2324 92 3 0 chr6 59508283 59508577 -122906665 + AluSp SINE Alu 1 295 -18 450 247 59 41 chr6 59509068 59509238 -122906004 + MER58C DNA MER1_type 40 212 -3 2033 147 0 10 chr6 59509698 59510005 -122905237 - AluJb SINE Alu -8 304 1 542 202 10 0 chr6 59510495 59510599 -122904643 + MER20 DNA MER1_type 111 215 -4 185 145 29 29 chr6 59511151 59511220 -122904022 + (TTAA)n Simple_repeat Simple_repeat 1 69 0 1974 146 0 0 chr6 59511308 59511621 -122903621 - AluSx SINE Alu 0 313 1 2189 97 31 0 chr6 59512573 59512861 -122902381 - AluSg SINE Alu -13 297 1 823 138 8 31 chr6 59512863 59512993 -122902249 - AluJo/FLAM SINE Alu -185 127 1 237 65 0 0 chr6 59513088 59513119 -122902123 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1369 259 61 38 chr6 59513740 59514212 -122901030 - L2 LINE L2 0 3313 2831 25 0 0 0 chr6 59514595 59514620 -122900622 + AT_rich Low_complexity Low_complexity 1 25 0 6368 77 3 40 chr6 59514759 59515120 -122900122 - L1PB1 LINE L1 -1 6150 5777 231 88 0 0 chr6 59515120 59515154 -122900088 + (TA)n Simple_repeat Simple_repeat 1 34 0 6368 77 3 40 chr6 59515154 59515873 -122899369 - L1PB1 LINE L1 -374 5777 5068 310 178 14 28 chr6 59516055 59516148 -122899094 + L1ME1 LINE L1 5378 5460 -706 968 202 0 10 chr6 59516151 59516349 -122898893 - L1M3 LINE L1 -451 5720 5525 1827 155 6 37 chr6 59516370 59516692 -122898550 - AluJb SINE Alu 0 312 1 23 78 0 0 chr6 59516755 59516806 -122898436 + AT_rich Low_complexity Low_complexity 1 51 0 21 71 0 0 chr6 59516828 59516870 -122898372 + AT_rich Low_complexity Low_complexity 1 42 0 1972 119 14 7 chr6 59517152 59517447 -122897795 + AluSx SINE Alu 6 302 -10 25 0 0 0 chr6 59518115 59518140 -122897102 + AT_rich Low_complexity Low_complexity 1 25 0 22 80 0 0 chr6 59518173 59518223 -122897019 + AT_rich Low_complexity Low_complexity 1 50 0 1415 124 29 9 chr6 59518429 59518639 -122896603 - AluSg/x SINE Alu -14 298 85 28 29 0 0 chr6 59519078 59519113 -122896129 + AT_rich Low_complexity Low_complexity 1 35 0 933 199 24 116 chr6 59519217 59519588 -122895654 + L1ME1 LINE L1 5789 6125 -41 457 179 42 11 chr6 59520322 59520417 -122894825 + MER5A DNA MER1_type 9 106 -83 730 215 130 60 chr6 59521233 59521549 -122893693 - MER46C DNA MER2_type 0 338 1 385 236 159 85 chr6 59521933 59522191 -122893051 + MLT1J LTR MaLR 235 511 0 1053 136 5 42 chr6 59522204 59522395 -122892847 - FRAM SINE Alu 0 176 1 2706 111 13 63 chr6 59522430 59523102 -122892140 - LTR8A LTR ERV1 0 727 1 1271 187 0 0 chr6 59523184 59523398 -122891844 + AluJo SINE Alu 85 298 -14 25 31 0 0 chr6 59523478 59523510 -122891732 + AT_rich Low_complexity Low_complexity 1 32 0 604 231 16 35 chr6 59523516 59523745 -122891497 + L1ME3 LINE L1 5905 6130 -34 186 239 102 45 chr6 59523962 59524050 -122891192 + L2 LINE L2 1680 1772 -1542 2441 143 34 0 chr6 59525225 59525638 -122889604 - MSTA LTR MaLR -1 427 1 261 370 49 0 chr6 59525706 59525787 -122889455 + L2 LINE L2 3136 3220 -52 243 0 0 0 chr6 59526227 59526254 -122888988 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1754 172 0 0 chr6 59526262 59526529 -122888713 - AluJb SINE Alu -45 267 1 4031 189 33 20 chr6 59527748 59528556 -122886686 - MER21B LTR ERV1 -44 819 1 390 242 58 11 chr6 59528633 59528752 -122886490 + MIR SINE MIR 14 130 -78 657 154 8 0 chr6 59528765 59528888 -122886354 + L1MC4 LINE L1 7919 8042 0 197 108 27 0 chr6 59529943 59529980 -122885262 + GA-rich Low_complexity Low_complexity 4 41 0 1733 247 103 64 chr6 59530506 59530759 -122884483 + L1MC5 LINE L1 5694 5936 -2025 1802 169 3 26 chr6 59530759 59531067 -122884175 + AluJb SINE Alu 3 303 -9 1733 247 103 64 chr6 59531067 59531816 -122883426 + L1MC5 LINE L1 5936 6655 -1306 1060 207 57 111 chr6 59531816 59532202 -122883040 - MLT1A1 LTR MaLR 0 365 1 1733 247 103 64 chr6 59532202 59532868 -122882374 + L1MC5 LINE L1 6655 7469 -492 987 312 76 13 chr6 59532893 59533354 -122881888 + LTR16C LTR ERVL 2 491 0 668 206 179 25 chr6 59533363 59533422 -122881820 + L1MC5 LINE L1 7498 7547 -414 212 0 36 0 chr6 59533422 59533450 -122881792 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 668 206 179 25 chr6 59533450 59533754 -122881488 + L1MC5 LINE L1 7547 7917 -44 198 287 23 103 chr6 59533793 59533880 -122881362 + L2 LINE L2 3231 3310 -3 1056 158 6 6 chr6 59534474 59534639 -122880603 + FAM SINE Alu 1 165 -10 24 0 0 0 chr6 59534914 59534938 -122880304 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 59534999 59535021 -122880221 + AT_rich Low_complexity Low_complexity 1 22 0 390 275 67 0 chr6 59536020 59536140 -122879102 - MIR SINE MIR -27 235 108 1858 172 0 20 chr6 59537717 59538014 -122877228 - AluSx SINE Alu -21 291 1 26 0 0 0 chr6 59538220 59538246 -122876996 + AT_rich Low_complexity Low_complexity 1 26 0 235 0 28 28 chr6 59538854 59538890 -122876352 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 261 275 50 0 chr6 59540039 59540119 -122875123 - MIR SINE MIR 0 262 179 472 200 174 19 chr6 59541050 59541205 -122874037 - MER58A DNA MER1_type -15 209 31 198 0 0 0 chr6 59541297 59541319 -122873923 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1605 150 0 104 chr6 59541345 59541527 -122873715 - AluJb SINE Alu -9 293 158 2058 112 0 55 chr6 59541527 59541857 -122873385 - AluSx SINE Alu 0 312 1 1605 150 0 104 chr6 59541857 59542000 -122873242 - AluJb SINE Alu -144 158 2 769 179 0 15 chr6 59542004 59542138 -122873104 - FLAM_C SINE Alu -1 132 1 709 222 12 0 chr6 59542743 59542905 -122872337 + MLT1C LTR MaLR 1 164 -226 309 48 0 0 chr6 59542907 59542949 -122872293 + MADE1 DNA Mariner 3 44 -36 2095 130 0 23 chr6 59542986 59543293 -122871949 - AluSq SINE Alu -13 300 1 1052 186 27 125 chr6 59543307 59543635 -122871607 + MLT1C LTR MaLR 165 460 -7 735 277 55 17 chr6 59544321 59544556 -122870686 - MIR SINE MIR -1 261 18 318 290 201 12 chr6 59544863 59545032 -122870210 - MIR SINE MIR -4 258 58 24 53 0 0 chr6 59545198 59545236 -122870006 + AT_rich Low_complexity Low_complexity 1 38 0 1496 122 58 55 chr6 59545242 59545569 -122869673 - L1MA8 LINE L1 -25 6266 5939 411 193 0 0 chr6 59545569 59545652 -122869590 + (TA)n Simple_repeat Simple_repeat 1 83 0 3782 138 35 26 chr6 59545652 59546751 -122868491 - L1MA8 LINE L1 -6 6148 5112 233 342 13 0 chr6 59546847 59546926 -122868316 - MIR SINE MIR -181 81 2 312 254 0 79 chr6 59547666 59547780 -122867462 - MIR SINE MIR -46 216 112 456 19 0 0 chr6 59548250 59548303 -122866939 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 1730 181 35 0 chr6 59548920 59549207 -122866035 - AluJb SINE Alu -15 297 1 25 83 0 0 chr6 59549264 59549324 -122865918 + AT_rich Low_complexity Low_complexity 1 60 0 2044 225 66 21 chr6 59549525 59550110 -122865132 - MLT1E2 LTR MaLR -7 619 3 414 0 0 0 chr6 59550392 59550438 -122864804 + (TG)n Simple_repeat Simple_repeat 1 46 0 2071 125 0 0 chr6 59550438 59550717 -122864525 - AluSx SINE Alu -33 279 1 697 194 90 7 chr6 59551647 59551802 -122863440 + AluJb SINE Alu 138 305 -7 2421 74 60 8 chr6 59552870 59553222 -122862020 + THE1C LTR MaLR 1 370 -5 228 235 20 0 chr6 59553632 59553683 -122861559 + (CA)n Simple_repeat Simple_repeat 2 53 0 360 318 122 19 chr6 59554138 59554352 -122860890 - L2 LINE L2 0 3313 3078 321 307 104 6 chr6 59554421 59554584 -122860658 - LTR33 LTR ERVL -322 199 21 291 227 151 8 chr6 59555393 59555512 -122859730 + MLT1J2 LTR MaLR 5 140 -310 22 0 0 0 chr6 59556871 59556893 -122858349 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 59559820 59559840 -122855402 + (A)n Simple_repeat Simple_repeat 1 20 0 27 29 0 0 chr6 59561873 59561907 -122853335 + AT_rich Low_complexity Low_complexity 1 34 0 269 219 24 73 chr6 59562239 59562321 -122852921 + MIR SINE MIR 99 176 -86 2312 128 0 0 chr6 59564015 59564327 -122850915 - AluSx SINE Alu 0 312 1 250 240 0 20 chr6 59564904 59565004 -122850238 + (TA)n Simple_repeat Simple_repeat 2 99 0 300 273 106 31 chr6 59565190 59565351 -122849891 + L1M4 LINE L1 5061 5233 -913 1907 163 0 19 chr6 59565352 59565659 -122849583 - AluJb SINE Alu -11 301 1 404 256 30 30 chr6 59565669 59565802 -122849440 + MER63A DNA MER1_type 77 209 -1 358 268 16 63 chr6 59565834 59566024 -122849218 - L1MC4a LINE L1 -1909 5899 5719 405 0 0 0 chr6 59566031 59566076 -122849166 + (TG)n Simple_repeat Simple_repeat 2 46 0 521 229 5 53 chr6 59567103 59567291 -122847951 + L1M4 LINE L1 2782 2960 -3186 487 333 26 11 chr6 59567291 59567480 -122847762 + MIR SINE MIR 57 248 -14 204 97 0 0 chr6 59568611 59568642 -122846600 + (TA)n Simple_repeat Simple_repeat 2 32 0 539 242 0 0 chr6 59568646 59568774 -122846468 - L1M4 LINE L1 -3428 2718 2591 2240 110 0 10 chr6 59568952 59569253 -122845989 + AluSx SINE Alu 1 298 -14 603 222 27 93 chr6 59571346 59571571 -122843671 - MIR SINE MIR -4 258 49 251 157 143 14 chr6 59571945 59572015 -122843227 - MER116 DNA Mariner 0 80 2 878 217 0 0 chr6 59572567 59572747 -122842495 + MER53 DNA DNA 6 185 -4 968 120 13 0 chr6 59574365 59574523 -122840719 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 824 334 112 34 chr6 59574871 59575542 -122839700 + L3 LINE CR1 854 1576 -1 508 197 0 0 chr6 59575803 59575907 -122839335 - FLAM_C SINE Alu 0 145 42 247 83 0 28 chr6 59576459 59576495 -122838747 + L2 LINE L2 3195 3229 -84 1244 240 49 20 chr6 59576498 59576840 -122838402 + MLT1E LTR MaLR 299 593 0 472 333 115 0 chr6 59576858 59577023 -122838219 - MIR SINE MIR -66 196 13 357 292 69 23 chr6 59577001 59577131 -122838111 + L2 LINE L2 3133 3268 -4 * 939 211 67 54 chr6 59577354 59577429 -122837813 - MER33 DNA MER1_type -2268 317 244 2381 110 0 0 chr6 59577429 59577739 -122837503 + AluSg SINE Alu 1 310 0 939 211 67 54 chr6 59577739 59577976 -122837266 - MER33 DNA MER1_type -2341 244 1 407 267 42 129 chr6 59578973 59579498 -122835744 + LTR67 LTR ERVL 25 503 -54 2333 86 7 3 chr6 59580265 59580566 -122834676 - AluSq SINE Alu -11 302 1 2493 82 0 0 chr6 59581073 59581379 -122833863 + AluY SINE Alu 1 306 -5 454 282 94 11 chr6 59683597 59683778 -122731464 + L1MC4a LINE L1 5483 5678 -443 690 212 35 59 chr6 59683835 59684038 -122731204 - MIR SINE MIR -24 238 41 304 170 88 75 chr6 59684150 59684297 -122730945 + L1ME4a LINE L1 5973 6121 0 212 286 71 41 chr6 59685403 59685501 -122729741 - MIR SINE MIR -153 109 9 319 194 194 28 chr6 59688925 59689033 -122726209 + MIR SINE MIR 20 145 -63 345 353 134 11 chr6 59689381 59689664 -122725578 + L2 LINE L2 2940 3257 -15 21 0 0 0 chr6 59691027 59691048 -122724194 + AT_rich Low_complexity Low_complexity 1 21 0 259 279 106 0 chr6 59691070 59691174 -122724068 + L1MC4a LINE L1 5793 5907 -1901 27 0 0 0 chr6 59691340 59691367 -122723875 + AT_rich Low_complexity Low_complexity 1 27 0 249 108 0 0 chr6 59693898 59693935 -122721307 + (T)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr6 59694150 59694174 -122721068 + AT_rich Low_complexity Low_complexity 1 24 0 200 122 0 24 chr6 59695112 59695153 -122720089 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 2053 150 0 0 chr6 59695641 59695947 -122719295 - AluJb SINE Alu -6 306 1 25 0 0 0 chr6 59696702 59696727 -122718515 + AT_rich Low_complexity Low_complexity 1 25 0 2060 121 10 3 chr6 59700383 59700681 -122714561 + AluSg SINE Alu 1 300 -10 230 239 65 11 chr6 59700903 59700995 -122714247 - L1MC5 LINE L1 -44 7917 7821 454 200 168 13 chr6 59701174 59701329 -122713913 + MIR SINE MIR 49 227 -35 2315 117 0 0 chr6 59702218 59702525 -122712717 - AluSx SINE Alu -5 307 1 392 325 92 8 chr6 59702617 59702824 -122712418 - MIR SINE MIR -12 250 31 3346 121 94 12 chr6 59703059 59703546 -122711696 + MER1A DNA MER1_type 1 527 0 1115 178 22 0 chr6 59705420 59705605 -122709637 - MER5A DNA MER1_type 0 189 1 457 275 94 19 chr6 59705620 59705780 -122709462 + MIR SINE MIR 20 191 -71 286 211 35 0 chr6 59706693 59706750 -122708492 + MER58A DNA MER1_type 39 97 -10 333 175 32 0 chr6 59706756 59706819 -122708423 + MER58A DNA MER1_type 151 215 -9 349 305 113 19 chr6 59707803 59708059 -122707183 + L2 LINE L2 1730 2009 -1305 656 259 76 34 chr6 59708063 59708299 -122706943 + MER112 DNA MER1_type 1 246 -14 538 140 75 0 chr6 59709011 59709104 -122706138 - FRAM SINE Alu -2 174 75 634 246 0 0 chr6 59709131 59709249 -122705993 - FLAM_A SINE Alu -15 118 1 1120 291 99 12 chr6 59709410 59709822 -122705420 - LTR16A LTR ERVL -2 448 1 2398 91 0 0 chr6 59709932 59710241 -122705001 + AluSc SINE Alu 1 309 0 293 186 47 23 chr6 59710246 59710332 -122704910 - L1PA13 LINE L1 -5 6158 6071 * 2156 116 14 6 chr6 59710326 59710810 -122704432 + L1P4 LINE L1 5084 5574 -587 194 255 21 0 chr6 59712358 59712405 -122702837 - L2 LINE L2 -6 3266 3219 258 178 32 16 chr6 59713480 59713553 -122701689 - HsTC2 DNA Tc2 0 1898 1825 586 132 33 50 chr6 59714430 59714551 -122700691 - L1MA9 LINE L1 -1 6311 6193 2138 137 40 20 chr6 59714621 59714971 -122700271 + THE1B LTR MaLR 1 357 -7 1811 203 36 65 chr6 59714972 59715494 -122699748 - L1MA9 LINE L1 -160 6152 5646 557 227 7 43 chr6 59715494 59715635 -122699607 + MSTC LTR MaLR 1 136 -292 391 302 9 0 chr6 59715677 59715783 -122699459 + L1MEd LINE L1 543 649 -5470 272 219 31 0 chr6 59715790 59715854 -122699388 - HsTC2 DNA Tc2 -1823 75 10 246 256 39 26 chr6 59715867 59715945 -122699297 + MLT1J LTR MaLR 71 149 -362 723 259 26 0 chr6 59716131 59716324 -122698918 - MER58A DNA MER1_type -26 198 1 247 303 105 25 chr6 59716490 59716652 -122698590 + L2 LINE L2 2600 2774 -540 22 0 0 0 chr6 59717032 59717054 -122698188 + AT_rich Low_complexity Low_complexity 1 22 0 2392 100 0 3 chr6 59719556 59719865 -122695377 + AluSx SINE Alu 1 308 -4 19879 178 17 10 chr6 59719882 59726600 -122688642 + L1PA13 LINE L1 1 6795 -19 441 268 134 9 chr6 59726858 59727089 -122688153 - L1ME3 LINE L1 -210 5935 5676 808 163 0 7 chr6 59727089 59727224 -122688018 - FLAM_C SINE Alu -1 142 9 2211 102 3 7 chr6 59727243 59727546 -122687696 - AluSx SINE Alu -10 302 1 302 353 21 24 chr6 59727546 59727774 -122687468 - L1ME3 LINE L1 -460 5685 5456 428 279 125 29 chr6 59727914 59728290 -122686952 - L1ME3 LINE L1 -747 5382 4971 890 243 37 62 chr6 59728536 59728890 -122686352 + MLT2C1 LTR ERVL 1 345 -52 223 220 34 0 chr6 59728890 59728949 -122686293 + (TCTCTG)n Simple_repeat Simple_repeat 1 61 0 244 247 0 26 chr6 59728949 59729026 -122686216 - L1MC4 LINE L1 -1340 6702 6628 249 270 98 34 chr6 59729044 59729248 -122685994 - L1ME3 LINE L1 -1477 4652 4436 256 280 103 57 chr6 59729303 59729462 -122685780 - L1ME3A LINE L1 -36 6134 5967 342 149 37 56 chr6 59729609 59729716 -122685526 - L1M4 LINE L1 -3714 2432 2328 1754 283 73 17 chr6 59729987 59730794 -122684448 - L1ME3 LINE L1 -1816 4313 3462 486 321 74 6 chr6 59731373 59731712 -122683530 - L1ME3 LINE L1 -4782 1528 1167 316 247 37 48 chr6 59731723 59731994 -122683248 - L1ME3 LINE L1 -5029 1090 641 274 294 25 50 chr6 59732010 59732129 -122683113 - L1ME3 LINE L1 -5547 572 457 621 178 19 0 chr6 59732459 59732566 -122682676 - MIR SINE MIR -118 144 36 1881 105 12 4 chr6 59732654 59732912 -122682330 - AluSc SINE Alu -17 292 33 798 187 25 9 chr6 59733301 59733529 -122681713 - MLT1A1 LTR MaLR -71 303 1 2203 91 0 7 chr6 59734024 59734350 -122680892 - AluY SINE Alu 0 324 1 2201 59 4 4 chr6 59735436 59735709 -122679533 + AluY SINE Alu 1 273 -38 22 0 0 0 chr6 59735750 59735772 -122679470 + AT_rich Low_complexity Low_complexity 1 22 0 516 268 221 0 chr6 59735887 59736100 -122679142 - MIR SINE MIR -1 261 2 24 0 0 0 chr6 59738242 59738266 -122676976 + AT_rich Low_complexity Low_complexity 1 24 0 302 261 23 11 chr6 59739329 59739417 -122675825 + (TATG)n Simple_repeat Simple_repeat 2 90 0 2168 115 0 0 chr6 59739500 59739795 -122675447 + AluSg SINE Alu 1 295 -15 2173 149 31 8 chr6 59739904 59740260 -122674982 + THE1B LTR MaLR 1 364 0 264 299 37 47 chr6 59740435 59740542 -122674700 + MIR SINE MIR 23 128 -80 2098 106 0 7 chr6 59740563 59740847 -122674395 + AluSx SINE Alu 1 282 -30 240 177 25 13 chr6 59741263 59741342 -122673900 + GA-rich Low_complexity Low_complexity 1 80 0 464 316 23 9 chr6 59741666 59741881 -122673361 + L1ME LINE L1 5508 5725 -396 550 314 83 0 chr6 59741899 59742128 -122673114 + L2 LINE L2 993 1240 -2074 564 300 125 31 chr6 59742153 59742536 -122672706 + L2 LINE L2 1913 2331 -983 3542 263 80 43 chr6 59743584 59744430 -122670812 - HAL1 LINE L1 -11 2496 1683 2470 85 0 0 chr6 59744430 59744735 -122670507 + AluY SINE Alu 1 305 -6 3542 263 80 43 chr6 59744735 59745634 -122669608 - HAL1 LINE L1 -824 1683 686 1610 197 36 14 chr6 59745796 59746157 -122669085 - LTR52 LTR ERVL -2 419 51 428 215 269 34 chr6 59746384 59746533 -122668709 + MER5A DNA MER1_type 1 184 -5 2119 133 10 0 chr6 59746901 59747201 -122668041 + AluSx SINE Alu 1 303 -9 30 59 0 0 chr6 59747456 59747507 -122667735 + AT_rich Low_complexity Low_complexity 1 51 0 1873 124 79 28 chr6 59747968 59748324 -122666918 - THE1C LTR MaLR 0 375 2 1977 163 2 118 chr6 59748452 59748925 -122666317 + MER47B DNA MER2_type 1 418 0 271 357 96 58 chr6 59748936 59749673 -122665569 + L2 LINE L2 2170 2934 -380 802 220 106 0 chr6 59749834 59750070 -122665172 - MIR SINE MIR 0 262 2 204 345 50 22 chr6 59750126 59750265 -122664977 + L2 LINE L2 3167 3309 -4 2271 98 0 0 chr6 59750307 59750603 -122664639 - AluY SINE Alu -15 296 1 203 184 0 0 chr6 59750949 59750987 -122664255 + T-rich Low_complexity Low_complexity 1 38 0 2099 89 31 7 chr6 59752005 59752296 -122662946 + AluSg SINE Alu 2 299 -11 212 300 43 14 chr6 59752871 59752941 -122662301 - L2 LINE L2 -31 3282 3211 1114 144 6 0 chr6 59753187 59753361 -122661881 - AluSg/x SINE Alu -2 310 136 786 243 52 5 chr6 59753525 59753735 -122661507 + MER33 DNA MER1_type 1 220 -104 316 193 148 0 chr6 59753806 59753894 -122661348 + MER33 DNA MER1_type 202 302 -22 290 214 23 61 chr6 59754447 59754578 -122660664 - Charlie7 DNA MER1_type -47 2565 2440 305 185 22 98 chr6 59754580 59754672 -122660570 - Charlie7 DNA MER1_type -2527 85 1 22 56 0 0 chr6 59754673 59754709 -122660533 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 59755106 59755134 -122660108 + AT_rich Low_complexity Low_complexity 1 28 0 4771 127 18 14 chr6 59755277 59756055 -122659187 - L1PB4 LINE L1 -1 6155 5375 2126 120 6 43 chr6 59756278 59756628 -122658614 + MER1B DNA MER1_type 1 337 0 2282 153 60 0 chr6 59757934 59758334 -122656908 - MSTB LTR MaLR -2 424 1 21 71 0 0 chr6 59758649 59758691 -122656551 + AT_rich Low_complexity Low_complexity 1 42 0 197 298 33 83 chr6 59759628 59759749 -122655493 - MIR SINE MIR -46 216 102 227 274 27 48 chr6 59760391 59760537 -122654705 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 * 239 294 0 0 chr6 59760480 59760548 -122654694 + CT-rich Low_complexity Low_complexity 3 70 0 198 0 0 0 chr6 59760662 59760684 -122654558 + (TG)n Simple_repeat Simple_repeat 1 22 0 299 59 0 59 chr6 59760684 59760735 -122654507 + (GA)n Simple_repeat Simple_repeat 2 49 0 212 271 104 52 chr6 59761440 59761536 -122653706 - MIR SINE MIR -59 149 49 755 283 60 11 chr6 59762281 59762631 -122652611 + LTR16A LTR ERVL 8 374 -76 1884 117 94 28 chr6 59765517 59765869 -122649373 + THE1C LTR MaLR 1 375 0 365 189 49 57 chr6 59765891 59766013 -122649229 - L1MC4 LINE L1 0 8042 7922 213 231 46 0 chr6 59766053 59766118 -122649124 + (TA)n Simple_repeat Simple_repeat 2 69 0 438 259 134 20 chr6 59766120 59766321 -122648921 - L1MC4 LINE L1 -130 7912 7689 5714 241 59 68 chr6 59766340 59766942 -122648300 - L1MC4a LINE L1 -220 7588 6982 1550 192 101 21 chr6 59766942 59767280 -122647962 - MLT1A1 LTR MaLR 0 365 1 5714 241 59 68 chr6 59767280 59769433 -122645809 - L1MC4a LINE L1 -826 6982 4860 2204 110 0 38 chr6 59769442 59769761 -122645481 - AluSq SINE Alu -6 307 1 236 294 35 47 chr6 59769984 59770069 -122645173 + MER5A DNA MER1_type 40 123 -66 213 369 21 21 chr6 59770002 59770143 -122645099 - MER5A DNA MER1_type -45 144 4 * 387 355 76 56 chr6 59772913 59773322 -122641920 - L2 LINE L2 -4 3268 2852 735 221 174 0 chr6 59773580 59773770 -122641472 + Charlie8 DNA MER1_type 52 274 -2143 585 128 39 0 chr6 59773858 59773960 -122641282 + LTR28 LTR ERV1 1 106 -914 * 944 239 68 39 chr6 59773939 59774248 -122640994 + LTR27 LTR ERV1 319 636 0 1564 99 0 14 chr6 59774995 59775206 -122640036 + AluSg/x SINE Alu 100 307 -5 22 0 0 0 chr6 59775798 59775820 -122639422 + AT_rich Low_complexity Low_complexity 1 22 0 204 250 17 33 chr6 59776142 59776202 -122639040 + L2 LINE L2 2596 2654 -660 1692 270 103 18 chr6 59776211 59776781 -122638461 + MLT2E LTR ERVL 10 628 0 387 311 82 15 chr6 59777034 59777240 -122638002 + MIR SINE MIR 34 253 -9 309 294 20 0 chr6 59777833 59777935 -122637307 - MIR SINE MIR -72 190 87 1593 183 0 69 chr6 59778276 59778593 -122636649 - AluJo SINE Alu -17 295 1 219 188 0 0 chr6 59779459 59779507 -122635735 + GA-rich Low_complexity Low_complexity 1 48 0 2142 100 6 26 chr6 59779614 59779925 -122635317 - AluSx SINE Alu -7 305 1 295 292 83 21 chr6 59780212 59780308 -122634934 + L2 LINE L2 3170 3271 -1 1978 144 7 0 chr6 59780453 59780744 -122634498 + AluSx SINE Alu 1 293 -19 1110 114 30 35 chr6 59780805 59781006 -122634236 - L1MA4 LINE L1 -6 6294 6095 340 209 147 58 chr6 59782485 59782609 -122632633 + L1ME4a LINE L1 5839 5951 -170 2354 89 0 0 chr6 59782609 59782900 -122632342 - AluSc SINE Alu -18 291 1 340 209 147 58 chr6 59782900 59783000 -122632242 + L1ME4a LINE L1 5951 6083 -38 189 0 0 0 chr6 59783038 59783059 -122632183 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 229 241 72 12 chr6 59783060 59783143 -122632099 - LTR9B LTR ERV1 -80 564 477 467 290 78 28 chr6 59783409 59783626 -122631616 + MIR SINE MIR 12 239 -23 380 304 169 0 chr6 59783780 59783928 -122631314 - MER5A DNA MER1_type 0 189 17 207 0 0 0 chr6 59786127 59786150 -122629092 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 4561 170 19 12 chr6 59788085 59789058 -122626184 - L1MB7 LINE L1 0 6184 5203 1924 140 52 27 chr6 59789058 59789387 -122625855 - MER1B DNA MER1_type 0 337 1 4561 170 19 12 chr6 59789387 59789405 -122625837 - L1MB7 LINE L1 -981 5203 5187 440 322 39 43 chr6 59789494 59789724 -122625518 - MIR SINE MIR -14 248 20 249 288 0 27 chr6 59789885 59789958 -122625284 + CT-rich Low_complexity Low_complexity 3 73 0 329 274 263 64 chr6 59789970 59790328 -122624914 - L2 LINE L2 -9 3304 2876 682 194 8 0 chr6 59790645 59790774 -122624468 - MLT1B LTR MaLR 0 390 261 30 45 0 0 chr6 59790775 59790819 -122624423 + AT_rich Low_complexity Low_complexity 1 44 0 1600 140 22 4 chr6 59791505 59791776 -122623466 - MLT1B LTR MaLR -114 276 1 288 340 10 0 chr6 59791776 59791873 -122623369 + MIR SINE MIR 140 237 -25 27 29 0 0 chr6 59791982 59792016 -122623226 + AT_rich Low_complexity Low_complexity 1 34 0 185 62 0 31 chr6 59792695 59792727 -122622515 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 367 341 50 6 chr6 59794797 59794979 -122620263 + MIR SINE MIR 25 214 -48 22 35 0 0 chr6 59795901 59795930 -122619312 + AT_rich Low_complexity Low_complexity 1 29 0 241 176 0 39 chr6 59796213 59796264 -122618978 + (CAAGA)n Simple_repeat Simple_repeat 2 50 0 2462 49 0 0 chr6 59797565 59797885 -122617357 + AluY SINE Alu 1 320 0 37 52 0 0 chr6 59798074 59798132 -122617110 + AT_rich Low_complexity Low_complexity 1 58 0 29 0 0 0 chr6 59798227 59798256 -122616986 + AT_rich Low_complexity Low_complexity 1 29 0 2229 102 0 0 chr6 59798256 59798549 -122616693 - AluSq SINE Alu -20 293 1 2092 133 3 0 chr6 59798697 59798991 -122616251 - AluSq SINE Alu -18 295 1 1924 121 3 40 chr6 59799510 59799828 -122615414 - AluSx SINE Alu 0 307 1 252 0 0 0 chr6 59801394 59801422 -122613820 + (TG)n Simple_repeat Simple_repeat 2 29 0 240 239 164 0 chr6 59801548 59801615 -122613627 + MIR3 SINE MIR 83 160 -48 432 55 0 0 chr6 59802054 59802109 -122613133 + (CA)n Simple_repeat Simple_repeat 2 56 0 358 257 38 87 chr6 59803600 59803783 -122611459 - HAL1 LINE L1 -2333 174 1 1006 192 77 146 chr6 59803888 59804279 -122610963 + MLT1A1 LTR MaLR 1 364 -1 219 313 84 0 chr6 59804561 59804644 -122610598 + MIR SINE MIR 101 190 -72 24 67 0 0 chr6 59805358 59805403 -122609839 + AT_rich Low_complexity Low_complexity 1 45 0 224 227 0 0 chr6 59806188 59806232 -122609010 + (TG)n Simple_repeat Simple_repeat 1 44 0 1764 151 8 0 chr6 59807232 59807497 -122607745 - AluSx SINE Alu -9 303 37 389 258 88 25 chr6 59807886 59807947 -122607295 - MIR SINE MIR -78 184 128 2270 108 0 0 chr6 59807947 59808242 -122607000 - AluSg SINE Alu -13 297 3 389 258 88 25 chr6 59808242 59808339 -122606903 - MIR SINE MIR -134 128 16 689 189 0 0 chr6 59809044 59809155 -122606087 + Tigger3(Golem) DNA MER2_type 1 111 -2918 * 4266 111 38 46 chr6 59809143 59809901 -122605341 + Tigger3(Golem) DNA MER2_type 2277 3028 -1 2743 209 24 22 chr6 59809914 59810801 -122604441 - L1MD2 LINE L1 -470 5889 4996 303 226 0 0 chr6 59810804 59810866 -122604376 + MIR SINE MIR 126 187 -75 1081 71 13 0 chr6 59810938 59811092 -122604150 + L1P LINE L1 4257 4412 -1734 1600 138 19 2 chr6 59811222 59811507 -122603735 + L1M2 LINE L1 5454 5735 -421 189 132 0 0 chr6 59812097 59812135 -122603107 + (TG)n Simple_repeat Simple_repeat 1 38 0 237 108 0 0 chr6 59812137 59812174 -122603068 + (GA)n Simple_repeat Simple_repeat 2 38 0 326 273 110 96 chr6 59814805 59815014 -122600228 - L2 LINE L2 0 3313 3102 4384 133 6 4 chr6 59815063 59815770 -122599472 + L1PA16 LINE L1 5459 6166 0 1840 250 34 24 chr6 59815806 59816435 -122598807 - L1ME1 LINE L1 -148 6018 5318 323 246 186 22 chr6 59816476 59816659 -122598583 - MER20 DNA MER1_type -5 214 2 203 203 16 0 chr6 59817013 59817077 -122598165 + CT-rich Low_complexity Low_complexity 3 67 0 263 259 158 9 chr6 59817324 59817470 -122597772 + MIR SINE MIR 3 173 -68 2052 122 7 0 chr6 59819746 59820041 -122595201 + AluSx SINE Alu 1 297 -15 2030 139 141 5 chr6 59820219 59820587 -122594655 + MSTA LTR MaLR 1 418 -10 471 153 35 0 chr6 59820587 59820672 -122594570 + MSTA LTR MaLR 341 428 0 24 0 0 0 chr6 59820993 59821017 -122594225 + AT_rich Low_complexity Low_complexity 1 24 0 381 307 69 14 chr6 59821106 59821324 -122593918 - L1ME4a LINE L1 -180 5941 5712 445 269 178 14 chr6 59822427 59822635 -122592607 - MIR SINE MIR -13 249 8 411 285 70 35 chr6 59823802 59823974 -122591268 + MER5B DNA MER1_type 1 178 0 439 253 101 53 chr6 59824887 59825262 -122589980 - L1ME4a LINE L1 -2 6119 5727 32 57 0 0 chr6 59825843 59825896 -122589346 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr6 59825995 59826024 -122589218 + AT_rich Low_complexity Low_complexity 1 29 0 467 307 43 12 chr6 59826303 59826466 -122588776 + MIR3 SINE MIR 34 201 -7 687 196 27 82 chr6 59826550 59826769 -122588473 - MLT1K LTR MaLR -14 574 368 380 274 123 54 chr6 59827686 59827890 -122587352 - MIR SINE MIR -37 225 8 281 188 29 14 chr6 59827896 59827965 -122587277 - MER116 DNA Mariner -1 79 10 457 195 203 0 chr6 59828294 59828422 -122586820 + MIR SINE MIR 74 227 -35 2450 51 3 0 chr6 59829571 59829865 -122585377 - AluY SINE Alu -16 295 1 342 234 179 107 chr6 59830229 59830519 -122584723 - L2 LINE L2 0 3313 3003 208 225 0 0 chr6 59830528 59830568 -122584674 + L2 LINE L2 3199 3238 -75 30 0 0 0 chr6 59830671 59830701 -122584541 + AT_rich Low_complexity Low_complexity 1 30 0 276 341 132 0 chr6 59830776 59830943 -122584299 - L3 LINE CR1 -608 969 781 857 242 23 18 chr6 59831683 59831902 -122583340 - MIR SINE MIR -10 252 33 413 286 36 29 chr6 59832264 59832404 -122582838 - L3 LINE CR1 -67 1510 1370 329 320 10 10 chr6 59832917 59833014 -122582228 - L2 LINE L2 -4 3268 3172 * 532 314 0 46 chr6 59833011 59833186 -122582056 + MER91A DNA MER1_type 22 188 -8 210 432 60 32 chr6 59833197 59833382 -122581860 - L2 LINE L2 -101 3171 2982 204 286 0 0 chr6 59833533 59833582 -122581660 + GA-rich Low_complexity Low_complexity 2 50 0 251 320 88 0 chr6 59836026 59836151 -122579091 + MIR SINE MIR 67 202 -60 31 26 0 0 chr6 59837381 59837419 -122577823 + AT_rich Low_complexity Low_complexity 1 38 0 259 235 0 0 chr6 59837513 59837564 -122577678 + L2 LINE L2 3222 3272 0 1992 131 16 13 chr6 59837600 59837905 -122577337 + AluSq SINE Alu 1 306 -7 315 0 0 0 chr6 59838401 59838436 -122576806 + (TG)n Simple_repeat Simple_repeat 1 35 0 224 216 40 0 chr6 59839462 59839536 -122575706 + (TA)n Simple_repeat Simple_repeat 1 77 0 430 320 67 21 chr6 59839753 59839947 -122575295 + MIR SINE MIR 29 231 -31 196 349 111 26 chr6 59840100 59840289 -122574953 + L3b LINE CR1 1254 1458 -125 337 318 204 3 chr6 59840585 59840928 -122574314 - L1ME4a LINE L1 -127 5994 5583 207 170 0 0 chr6 59841154 59841201 -122574041 + (TG)n Simple_repeat Simple_repeat 1 47 0 208 308 42 58 chr6 59841411 59841531 -122573711 - L2 LINE L2 -36 3236 3119 648 120 0 0 chr6 59842693 59842793 -122572449 + (TTCC)n Simple_repeat Simple_repeat 4 103 0 264 88 0 0 chr6 59842793 59842827 -122572415 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 1942 134 14 0 chr6 59842827 59843110 -122572132 - AluSx SINE Alu -21 291 5 496 254 59 75 chr6 59843328 59843570 -122571672 - MIR SINE MIR -27 235 2 1825 166 55 0 chr6 59844115 59844440 -122570802 + MER2 DNA MER2_type 1 343 -1 1143 223 60 6 chr6 59845338 59845700 -122569542 - Charlie4a DNA MER1_type 0 508 17 32 0 0 0 chr6 59845835 59845867 -122569375 + AT_rich Low_complexity Low_complexity 1 32 0 1563 143 16 0 chr6 59846443 59846688 -122568554 + LTR26 LTR ERV1 1 249 -354 243 180 140 0 chr6 59846749 59846799 -122568443 + LTR26 LTR ERV1 262 318 -285 1901 135 13 28 chr6 59846829 59847147 -122568095 + LTR26 LTR ERV1 291 603 0 884 211 74 0 chr6 59848233 59848408 -122566834 - MER5A DNA MER1_type 0 189 2 270 288 234 11 chr6 59849370 59849547 -122565695 + MIR SINE MIR 32 248 -14 2350 79 7 0 chr6 59849646 59849949 -122565293 + AluSp SINE Alu 1 305 -8 185 310 14 14 chr6 59850182 59850253 -122564989 + MIR SINE MIR 192 262 0 707 236 133 15 chr6 59851919 59852114 -122563128 - MER58A DNA MER1_type -5 219 2 1579 163 56 31 chr6 59852988 59853276 -122561966 + AluJo SINE Alu 1 295 -17 442 114 20 161 chr6 59853279 59853357 -122561885 + MER53 DNA DNA 4 53 -136 2329 105 3 3 chr6 59853357 59853670 -122561572 - AluSq SINE Alu 0 313 1 442 114 20 161 chr6 59853670 59853740 -122561502 + MER53 DNA DNA 53 131 -58 346 217 0 0 chr6 59853736 59853819 -122561423 + MER53 DNA DNA 88 170 -19 * 303 243 78 10 chr6 59854165 59854268 -122560974 - L1ME4a LINE L1 -43 6078 5969 204 144 56 11 chr6 59855391 59855481 -122559761 + (TA)n Simple_repeat Simple_repeat 1 94 0 181 125 31 0 chr6 59855677 59855709 -122559533 + MIR3 SINE MIR 176 208 0 2337 82 0 16 chr6 59856074 59856392 -122558850 - AluSq SINE Alu 0 313 1 21 36 0 0 chr6 59856711 59856739 -122558503 + AT_rich Low_complexity Low_complexity 1 28 0 368 242 96 59 chr6 59856787 59857006 -122558236 - L1ME3A LINE L1 -262 5902 5676 1091 137 0 23 chr6 59857052 59857227 -122558015 - THE1C LTR MaLR -204 171 1 661 266 116 8 chr6 59857238 59857505 -122557737 - L1ME3A LINE L1 -557 5607 5312 22 70 0 0 chr6 59857861 59857904 -122557338 + AT_rich Low_complexity Low_complexity 1 43 0 33 0 0 0 chr6 59858637 59858670 -122556572 + AT_rich Low_complexity Low_complexity 1 33 0 561 271 89 23 chr6 59859944 59860158 -122555084 + MIR SINE MIR 11 238 -24 187 233 23 81 chr6 59860537 59860623 -122554619 + L2 LINE L2 2193 2273 -1041 713 309 0 18 chr6 59860825 59861048 -122554194 + L2 LINE L2 2157 2375 -939 621 230 0 0 chr6 59861093 59861219 -122554023 - L1MC4a LINE L1 -1026 6782 6657 1262 296 34 24 chr6 59861220 59861819 -122553423 + L2 LINE L2 2714 3311 -2 270 270 46 52 chr6 59863439 59863613 -122551629 + Charlie7 DNA MER1_type 2438 2610 -2 183 42 0 0 chr6 59864319 59864343 -122550899 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 321 26 0 0 chr6 59865327 59865365 -122549877 + (TG)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr6 59865365 59865394 -122549848 + (GA)n Simple_repeat Simple_repeat 2 30 0 996 216 9 9 chr6 59865643 59865861 -122549381 - MER20 DNA MER1_type 0 219 2 35 92 0 0 chr6 59867312 59867410 -122547832 + AT_rich Low_complexity Low_complexity 1 98 0 2031 136 0 13 chr6 59867554 59867856 -122547386 - AluSq SINE Alu -15 298 1 585 0 0 0 chr6 59868009 59868074 -122547168 + (CTATT)n Simple_repeat Simple_repeat 3 67 0 197 339 25 59 chr6 59868150 59868268 -122546974 - MIR3 SINE MIR -48 160 47 881 219 0 0 chr6 59868447 59868611 -122546631 + MER58B DNA MER1_type 178 341 0 252 200 0 0 chr6 59868776 59868831 -122546411 + (TAA)n Simple_repeat Simple_repeat 2 56 0 25 31 0 0 chr6 59870075 59870107 -122545135 + AT_rich Low_complexity Low_complexity 1 32 0 492 334 95 28 chr6 59871043 59871465 -122543777 + LTR16A LTR ERVL 1 450 0 799 294 85 4 chr6 59871913 59872161 -122543081 - MLT1J LTR MaLR -175 336 69 508 320 53 18 chr6 59872367 59872595 -122542647 - MIR SINE MIR 0 262 27 1775 146 16 50 chr6 59872824 59873146 -122542096 - AluJo SINE Alu -1 311 1 1057 224 57 4 chr6 59873435 59873663 -122541579 - MIR SINE MIR 0 262 23 31 0 0 0 chr6 59873866 59873897 -122541345 + AT_rich Low_complexity Low_complexity 1 31 0 228 318 28 28 chr6 59874780 59874887 -122540355 - MIR SINE MIR 0 262 156 444 171 108 45 chr6 59875381 59875492 -122539750 - L2 LINE L2 0 3313 3196 527 317 44 26 chr6 59876034 59876261 -122538981 - MIR SINE MIR -6 256 26 382 258 122 58 chr6 59876764 59876996 -122538246 + MIR SINE MIR 1 250 -12 184 265 7 103 chr6 59877253 59877389 -122537853 - L3 LINE CR1 -264 1313 1191 * 614 307 75 15 chr6 59877380 59877647 -122537595 - L2 LINE L2 -3 3310 3028 184 273 23 68 chr6 59877720 59877808 -122537434 - L2 LINE L2 -248 3024 2941 339 226 132 19 chr6 59878015 59878121 -122537121 - MER94 DNA DNA -11 123 6 341 207 36 54 chr6 59878126 59878237 -122537005 - MIR SINE MIR -137 125 17 331 250 88 44 chr6 59879697 59879833 -122535409 - MIR3 SINE MIR -30 178 37 993 263 170 26 chr6 59880147 59880696 -122534546 - L2 LINE L2 -5 3308 2669 1278 244 139 3 chr6 59880696 59881040 -122534202 - LTR16A LTR ERVL -3 447 57 1285 307 129 21 chr6 59881115 59881727 -122533515 - L2 LINE L2 -655 2659 1982 279 333 133 17 chr6 59882393 59882513 -122532729 + L2 LINE L2 3139 3272 0 231 214 0 0 chr6 59883700 59883756 -122531486 + (TA)n Simple_repeat Simple_repeat 2 57 0 213 159 0 0 chr6 59883779 59883823 -122531419 + (TA)n Simple_repeat Simple_repeat 2 45 0 502 306 14 13 chr6 59884029 59884214 -122531028 - MIR SINE MIR -57 205 20 360 250 202 0 chr6 59884435 59884559 -122530683 + MER5A DNA MER1_type 41 189 0 533 95 24 0 chr6 59884571 59884655 -122530587 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2354 72 7 3 chr6 59884658 59884962 -122530280 - AluY SINE Alu -6 305 1 180 111 0 0 chr6 59885893 59885920 -122529322 + (T)n Simple_repeat Simple_repeat 1 27 0 25 0 0 0 chr6 59887805 59887830 -122527412 + AT_rich Low_complexity Low_complexity 1 25 0 1418 304 95 4 chr6 59888804 59889318 -122525924 + L2 LINE L2 2080 2640 -674 787 205 70 32 chr6 59889313 59889498 -122525744 + L2 LINE L2 3121 3312 -1 * 3596 294 114 13 chr6 59889482 59890891 -122524351 - L2 LINE L2 -1723 1591 41 5182 154 31 29 chr6 59891007 59891883 -122523359 + L1MA8 LINE L1 3185 4057 -2234 2317 97 3 0 chr6 59891883 59892193 -122523049 - AluY SINE Alu 0 311 1 5182 154 31 29 chr6 59892193 59892344 -122522898 + L1MA8 LINE L1 4057 4206 -2085 2281 82 3 0 chr6 59892344 59892676 -122522566 + AluY SINE Alu 1 333 0 5182 154 31 29 chr6 59892676 59894498 -122520744 + L1MA8 LINE L1 4206 6269 -22 319 308 76 28 chr6 59894672 59894883 -122520359 + L2 LINE L2 1636 1856 -1458 2356 74 0 16 chr6 59894908 59895218 -122520024 - AluY SINE Alu -6 305 1 253 236 56 45 chr6 59895511 59895600 -122519642 + L2 LINE L2 3223 3312 -1 24 67 0 0 chr6 59896287 59896332 -122518910 + AT_rich Low_complexity Low_complexity 1 45 0 256 326 98 14 chr6 59896558 59896838 -122518404 + L1MC/D LINE L1 5364 5665 -502 2487 40 0 13 chr6 59897612 59897914 -122517328 - AluY SINE Alu -13 298 1 187 219 49 81 chr6 59897992 59898115 -122517127 - L2 LINE L2 -103 3210 3092 305 121 0 18 chr6 59898323 59898380 -122516862 - L1MD3 LINE L1 -4 8038 7938 374 364 56 0 chr6 59901928 59902090 -122513152 + L2 LINE L2 3101 3271 -1 222 346 45 83 chr6 59902250 59902406 -122512836 + L2 LINE L2 3117 3266 -6 238 319 167 46 chr6 59902643 59903367 -122511875 - L2 LINE L2 -697 2617 1806 751 221 58 0 chr6 59903397 59903569 -122511673 + MIR SINE MIR 69 250 -12 305 314 58 41 chr6 59903963 59904084 -122511158 + L2 LINE L2 3136 3258 -14 231 36 0 0 chr6 59904084 59904112 -122511130 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 23 0 0 0 chr6 59905220 59905243 -122509999 + AT_rich Low_complexity Low_complexity 1 23 0 247 321 108 48 chr6 59905252 59905520 -122509722 - L2 LINE L2 -44 3228 2945 233 366 81 8 chr6 59905523 59905758 -122509484 - L2 LINE L2 -1209 2105 1854 611 222 58 63 chr6 59905781 59905970 -122509272 - MLT1E3 LTR MaLR 0 624 439 710 264 36 21 chr6 59906916 59907109 -122508133 - MIR SINE MIR -49 213 18 311 64 0 21 chr6 59907535 59907582 -122507660 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 2266 118 0 0 chr6 59907898 59908202 -122507040 + AluSg SINE Alu 3 306 -4 615 75 11 75 chr6 59909796 59909983 -122505259 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 180 77 0 0 chr6 59910197 59910223 -122505019 + (TA)n Simple_repeat Simple_repeat 2 27 0 298 214 0 71 chr6 59910334 59910418 -122504824 - MER5A DNA MER1_type -80 109 32 420 296 30 45 chr6 59910564 59910696 -122504546 - L2 LINE L2 -6 3266 3137 3575 83 2 0 chr6 59911102 59911581 -122503661 - L1PA13 LINE L1 -318 5845 5366 1818 144 13 0 chr6 59911581 59911869 -122503373 + L1PA13 LINE L1 5856 6158 -5 321 169 0 0 chr6 59911895 59911954 -122503288 + (TG)n Simple_repeat Simple_repeat 2 60 0 30 69 0 0 chr6 59912243 59912301 -122502941 + AT_rich Low_complexity Low_complexity 1 58 0 296 289 40 54 chr6 59912344 59912493 -122502749 + MIR3 SINE MIR 60 206 -2 251 287 59 22 chr6 59915092 59915364 -122499878 + L1M4 LINE L1 2199 2480 -3666 21 0 0 0 chr6 59915474 59915495 -122499747 + AT_rich Low_complexity Low_complexity 1 21 0 310 171 0 102 chr6 59915889 59915977 -122499265 - MER116 DNA Mariner -1 79 1 1052 236 55 50 chr6 59916127 59916491 -122498751 + LTR16A1 LTR ERVL 88 453 -4 432 311 30 15 chr6 59917721 59917856 -122497386 + MIR3 SINE MIR 51 187 -21 339 336 51 0 chr6 59918006 59918143 -122497099 + MIR SINE MIR 81 224 -38 391 313 64 101 chr6 59918316 59918722 -122496520 + L2 LINE L2 2882 3272 0 2351 81 0 3 chr6 59920711 59921019 -122494223 - AluSc SINE Alu -2 307 1 197 250 0 50 chr6 59921019 59921079 -122494163 + MER5B DNA MER1_type 114 170 -8 25 51 0 0 chr6 59921799 59921838 -122493404 + AT_rich Low_complexity Low_complexity 1 39 0 1938 125 0 54 chr6 59921890 59922225 -122493017 - AluSx SINE Alu 0 319 1 309 158 37 0 chr6 59922275 59922357 -122492885 + (TA)n Simple_repeat Simple_repeat 1 85 0 1650 181 7 13 chr6 59923839 59924138 -122491104 - AluJo SINE Alu -5 307 11 643 262 198 20 chr6 59924273 59924617 -122490625 + LTR16C LTR ERVL 33 437 -54 2735 194 37 40 chr6 59924675 59925094 -122490148 + MER82 DNA MER2_type 13 431 -222 2256 90 0 3 chr6 59925094 59925393 -122489849 - AluSq SINE Alu -15 298 1 2735 194 37 40 chr6 59925393 59925591 -122489651 + MER82 DNA MER2_type 431 628 -25 447 322 227 21 chr6 59926531 59927139 -122488103 - L2 LINE L2 -803 2511 1779 645 287 78 25 chr6 59927319 59927563 -122487679 - MIR SINE MIR 0 262 6 6970 53 0 23 chr6 59927579 59928534 -122486708 + L1PA7 LINE L1 5219 6152 -2 194 91 30 0 chr6 59929166 59929199 -122486043 + (TTA)n Simple_repeat Simple_repeat 2 35 0 36 0 0 0 chr6 59929570 59929606 -122485636 + AT_rich Low_complexity Low_complexity 1 36 0 246 143 0 0 chr6 59930206 59930255 -122484987 + (CA)n Simple_repeat Simple_repeat 1 49 0 27 62 0 0 chr6 59930650 59930698 -122484544 + AT_rich Low_complexity Low_complexity 1 48 0 3037 99 22 5 chr6 59931906 59932350 -122482892 + L1PA11 LINE L1 5720 6171 -3 28 29 0 0 chr6 59932350 59932385 -122482857 + AT_rich Low_complexity Low_complexity 1 35 0 231 287 70 39 chr6 59932555 59932684 -122482558 - L1M4 LINE L1 -1918 4228 4096 3224 262 88 77 chr6 59933366 59933499 -122481743 - HAL1 LINE L1 -629 1878 1748 2548 49 7 0 chr6 59933499 59933807 -122481435 - AluY SINE Alu -1 310 1 3224 262 88 77 chr6 59933807 59934393 -122480849 - HAL1 LINE L1 -759 1748 1170 1543 141 76 57 chr6 59934393 59934761 -122480481 - THE1C LTR MaLR 0 375 1 3224 262 88 77 chr6 59934761 59934787 -122480455 - HAL1 LINE L1 -1337 1170 1146 240 105 26 0 chr6 59934787 59934825 -122480417 + MER81 DNA DNA 35 73 -41 3224 262 88 77 chr6 59934825 59935040 -122480202 - HAL1 LINE L1 -1361 1146 935 279 0 0 0 chr6 59935040 59935071 -122480171 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3224 262 88 77 chr6 59935071 59935926 -122479316 - HAL1 LINE L1 -1572 935 1 300 297 92 5 chr6 59935998 59936183 -122479059 - L1M4 LINE L1 -2322 3824 3624 1739 141 50 94 chr6 59936233 59936516 -122478726 + MER7A DNA MER2_type 4 267 -2771 3891 112 3 16 chr6 59936516 59937121 -122478121 + L1PB1 LINE L1 5552 6148 -3 1739 141 50 94 chr6 59937121 59937198 -122478044 + MER7A DNA MER2_type 267 346 0 380 334 70 73 chr6 59937201 59937815 -122477427 - L1M4 LINE L1 -2576 3570 2959 5291 160 38 52 chr6 59938046 59938394 -122476848 + L1MA9 LINE L1 4710 5061 -1251 198 0 0 0 chr6 59938394 59938416 -122476826 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5291 160 38 52 chr6 59938416 59939662 -122475580 + L1MA9 LINE L1 5061 6311 -1 436 314 126 44 chr6 59939695 59940395 -122474847 - L1M4 LINE L1 -3240 2906 2150 344 260 45 45 chr6 59940613 59940767 -122474475 - Charlie7 DNA MER1_type -971 1641 1488 2180 281 54 48 chr6 59940890 59942044 -122473198 - Charlie7 DNA MER1_type -1346 1266 106 486 254 25 8 chr6 59942044 59942166 -122473076 - MER58A DNA MER1_type -1 223 100 538 202 39 0 chr6 59942174 59942278 -122472964 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3591 113 69 69 chr6 59942269 59942482 -122472760 + Tigger3(Golem) DNA MER2_type 2277 2489 -539 2389 77 3 10 chr6 59942482 59942792 -122472450 - AluY SINE Alu -3 308 1 3591 113 69 69 chr6 59942792 59942898 -122472344 + Tigger3(Golem) DNA MER2_type 2489 2594 -434 1875 151 14 0 chr6 59942898 59943183 -122472059 + AluSx SINE Alu 1 289 -23 3591 113 69 69 chr6 59943183 59943614 -122471628 + Tigger3(Golem) DNA MER2_type 2593 3028 0 490 218 20 10 chr6 59943614 59943704 -122471538 - MER58A DNA MER1_type -16 91 1 1523 206 36 61 chr6 59945591 59946247 -122468995 + L1MA9 LINE L1 5700 6291 -9 329 200 24 12 chr6 59946680 59946765 -122468477 + L2 LINE L2 3190 3275 -38 2006 120 0 20 chr6 59948006 59948298 -122466944 - AluSx SINE Alu -26 286 1 183 162 0 0 chr6 59949150 59949187 -122466055 + (CA)n Simple_repeat Simple_repeat 1 37 0 192 250 68 45 chr6 59949359 59949447 -122465795 - MIR3 SINE MIR -4 204 115 824 204 7 0 chr6 59949896 59950048 -122465194 - MER20 DNA MER1_type 0 219 67 194 217 36 121 chr6 59950068 59950151 -122465091 - MIR3 SINE MIR -48 160 85 2034 104 49 3 chr6 59950473 59950760 -122464482 - AluSx SINE Alu -12 300 1 330 45 0 0 chr6 59951549 59951593 -122463649 + (CGGTG)n Simple_repeat Simple_repeat 1 44 0 183 80 0 0 chr6 59951806 59951831 -122463411 + (A)n Simple_repeat Simple_repeat 1 25 0 1815 164 0 10 chr6 59953126 59953418 -122461824 - AluJo SINE Alu -23 289 1 22 0 0 0 chr6 59953468 59953490 -122461752 + AT_rich Low_complexity Low_complexity 1 22 0 2117 63 0 11 chr6 59953586 59953855 -122461387 - AluY SINE Alu -22 289 24 24 32 0 0 chr6 59957275 59957306 -122457936 + AT_rich Low_complexity Low_complexity 1 31 0 359 294 3 80 chr6 59957758 59957833 -122457409 - MIR3 SINE MIR -17 191 127 2286 93 3 0 chr6 59957833 59958145 -122457097 + AluSq SINE Alu 1 313 0 359 294 3 80 chr6 59958145 59958212 -122457030 - MIR3 SINE MIR -81 127 56 37 81 0 0 chr6 59958218 59958304 -122456938 + AT_rich Low_complexity Low_complexity 1 86 0 1816 161 0 20 chr6 59958804 59959108 -122456134 - AluJb SINE Alu -14 298 1 198 136 0 0 chr6 59959405 59959449 -122455793 + (TA)n Simple_repeat Simple_repeat 2 45 0 27 0 0 0 chr6 59959712 59959739 -122455503 + AT_rich Low_complexity Low_complexity 1 27 0 248 254 0 0 chr6 59959902 59959957 -122455285 - L2 LINE L2 -5 3308 3254 205 247 14 41 chr6 59961212 59961285 -122453957 + CT-rich Low_complexity Low_complexity 4 74 0 387 73 0 0 chr6 59962790 59962845 -122452397 + (CA)n Simple_repeat Simple_repeat 1 55 0 227 395 0 0 chr6 59962974 59963050 -122452192 + MIR SINE MIR 46 121 -87 386 304 177 6 chr6 59963424 59963582 -122451660 + MER5A DNA MER1_type 4 188 -1 189 342 26 40 chr6 59964306 59964382 -122450860 - L2 LINE L2 -49 3223 3149 975 286 120 36 chr6 59964455 59965023 -122450219 + L2 LINE L2 2708 3313 0 2910 84 33 2 chr6 59965090 59965516 -122449726 + L1PA10 LINE L1 5717 6155 -13 195 331 29 58 chr6 59966873 59967012 -122448230 + MIR SINE MIR 68 202 -60 185 196 18 0 chr6 59969040 59969096 -122446146 + (TA)n Simple_repeat Simple_repeat 1 57 0 201 74 0 0 chr6 59969696 59969723 -122445519 + (TA)n Simple_repeat Simple_repeat 1 27 0 420 357 20 15 chr6 59970033 59970229 -122445013 - MIR3 SINE MIR -9 199 3 21 36 0 0 chr6 59970395 59970423 -122444819 + AT_rich Low_complexity Low_complexity 1 28 0 2515 53 0 0 chr6 59970613 59970916 -122444326 + AluY SINE Alu 1 303 -8 1058 167 126 7 chr6 59971064 59971334 -122443908 + MER33 DNA MER1_type 1 302 -22 834 206 24 0 chr6 59972433 59972603 -122442639 - L1MB1 LINE L1 -7 6161 5988 305 297 78 0 chr6 59972666 59972794 -122442448 - HAL1 LINE L1 -861 1646 1509 265 313 62 21 chr6 59972851 59973043 -122442199 - HAL1 LINE L1 -1078 1429 1230 638 229 0 8 chr6 59973050 59973172 -122442070 + Tigger3(Golem) DNA MER2_type 2 122 -2907 * 2818 111 69 18 chr6 59973158 59973652 -122441590 + Tigger3(Golem) DNA MER2_type 2285 2803 -226 1387 115 0 28 chr6 59973690 59973908 -122441334 - AluSc SINE Alu -20 289 78 428 256 22 0 chr6 59973908 59973998 -122441244 + Tigger3(Golem) DNA MER2_type 2938 3029 0 245 302 90 16 chr6 59974020 59974209 -122441033 - L1MEd LINE L1 -5022 1097 895 1929 170 19 24 chr6 59974872 59975249 -122439993 + THE1C LTR MaLR 1 375 0 34 42 0 0 chr6 59976994 59977042 -122438200 + AT_rich Low_complexity Low_complexity 1 48 0 668 87 0 0 chr6 59977872 59977964 -122437278 + AluSc SINE Alu 208 299 -10 15069 172 29 32 chr6 59979101 59983491 -122431751 + L1MA2 LINE L1 15 4732 -2991 6171 97 11 0 chr6 59983491 59985133 -122430109 - L1PA10 LINE L1 -4 6164 4513 15069 172 29 32 chr6 59985133 59988116 -122427126 + L1MA2 LINE L1 4732 7723 0 337 210 152 43 chr6 59988504 59988642 -122426600 + MIR SINE MIR 110 262 0 180 125 0 0 chr6 59988967 59988999 -122426243 + (T)n Simple_repeat Simple_repeat 1 32 0 385 284 32 26 chr6 59989204 59989359 -122425883 + L2 LINE L2 3158 3313 0 513 149 0 0 chr6 59989442 59989529 -122425713 - L1MA5A LINE L1 0 6297 6211 225 284 30 0 chr6 59990854 59990921 -122424321 + GA-rich Low_complexity Low_complexity 4 72 0 513 294 64 49 chr6 59990928 59991132 -122424110 - MIR SINE MIR -15 247 41 894 355 97 29 chr6 59992245 59992998 -122422244 + L2 LINE L2 458 1261 -2053 592 276 25 35 chr6 59993057 59993260 -122421982 - L2 LINE L2 0 3313 3113 390 273 91 58 chr6 59993371 59993525 -122421717 - L2 LINE L2 -232 3081 2923 2632 306 98 11 chr6 59994289 59995366 -122419876 - L2 LINE L2 -362 2952 1782 279 312 35 85 chr6 59995382 59995581 -122419661 + L2 LINE L2 1343 1531 -1783 1907 183 34 25 chr6 59995590 59995945 -122419297 - MLT1A1 LTR MaLR -1 364 7 386 335 75 19 chr6 59995950 59996162 -122419080 + L2 LINE L2 1609 1832 -1482 2165 222 35 8 chr6 59996715 59997237 -122418005 + L1ME1 LINE L1 5626 6161 -5 294 230 59 20 chr6 59998208 59998360 -122416882 + L1MDa LINE L1 2402 2559 -3981 360 346 42 23 chr6 59999297 59999511 -122415731 + L2 LINE L2 2819 3036 -277 270 261 29 14 chr6 59999552 59999621 -122415621 + L2 LINE L2 3239 3308 -5 27 29 0 0 chr6 59999795 59999829 -122415413 + AT_rich Low_complexity Low_complexity 1 34 0 491 230 96 38 chr6 60000617 60000856 -122414386 + MER112 DNA MER1_type 4 256 0 227 149 0 21 chr6 60000966 60001013 -122414229 + (GAAAA)n Simple_repeat Simple_repeat 1 46 0 2366 105 0 6 chr6 60001491 60001842 -122413400 - L1P LINE L1 -1120 5026 4678 1262 273 91 21 chr6 60001811 60002327 -122412915 - L1ME LINE L1 -5513 606 55 * 1713 183 3 3 chr6 60002498 60002787 -122412455 + AluJo SINE Alu 8 296 -16 356 258 10 21 chr6 60002910 60003007 -122412235 - L1ME LINE L1 -5914 205 110 234 231 64 77 chr6 60003013 60003091 -122412151 + MER116 DNA Mariner 2 78 -2 298 322 144 11 chr6 60003174 60003348 -122411894 + MARNA DNA Mariner 341 537 -49 2035 203 120 9 chr6 60003977 60004444 -122410798 - LTR53 LTR ERVL 0 519 1 266 381 116 47 chr6 60004534 60004964 -122410278 + L2 LINE L2 2809 3268 -4 26 50 0 0 chr6 60005692 60005732 -122409510 + AT_rich Low_complexity Low_complexity 1 40 0 202 350 15 51 chr6 60007061 60007198 -122408044 + MIR3 SINE MIR 1 132 -76 22 56 0 0 chr6 60007610 60007646 -122407596 + AT_rich Low_complexity Low_complexity 1 36 0 2202 108 0 13 chr6 60007833 60008140 -122407102 - AluSx SINE Alu -9 303 1 709 226 0 0 chr6 60008240 60008373 -122406869 + FLAM_A SINE Alu 1 133 0 2509 79 44 0 chr6 60009031 60009371 -122405871 + THE1A LTR MaLR 1 355 0 22 0 0 0 chr6 60012277 60012299 -122402943 + AT_rich Low_complexity Low_complexity 1 22 0 192 200 0 0 chr6 60013965 60014010 -122401232 + (CATA)n Simple_repeat Simple_repeat 2 46 0 222 311 28 19 chr6 60014148 60014254 -122400988 + MIR3 SINE MIR 81 187 -21 211 202 307 44 chr6 60014362 60014476 -122400766 - MIR SINE MIR -56 206 63 888 241 46 17 chr6 60014616 60014857 -122400385 - MIR SINE MIR -1 261 14 439 319 173 4 chr6 60014986 60015212 -122400030 - L3 LINE CR1 -7 1570 1307 345 315 62 58 chr6 60015501 60015742 -122399500 - L3 LINE CR1 -610 967 726 1527 203 0 14 chr6 60015934 60016220 -122399022 - AluJo SINE Alu -30 282 1 225 179 0 0 chr6 60016220 60016259 -122398983 - L2 LINE L2 -12 3301 3263 1985 165 37 3 chr6 60016984 60017306 -122397936 + MER1B DNA MER1_type 1 333 -4 326 380 41 0 chr6 60017794 60017915 -122397327 + L2 LINE L2 3137 3262 -10 1992 117 43 0 chr6 60018210 60018492 -122396750 + AluSq SINE Alu 7 300 -13 976 279 167 41 chr6 60018844 60019556 -122395686 + L2 LINE L2 2514 3311 -2 2278 103 3 0 chr6 60020103 60020405 -122394837 + AluSx SINE Alu 1 303 -9 23 68 0 0 chr6 60021631 60021675 -122393567 + AT_rich Low_complexity Low_complexity 1 44 0 254 346 90 27 chr6 60021914 60022102 -122393140 + MIR SINE MIR 2 201 -61 24 32 0 0 chr6 60027136 60027167 -122388075 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr6 60027245 60027280 -122387962 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 60027429 60027450 -122387792 + AT_rich Low_complexity Low_complexity 1 21 0 184 278 226 15 chr6 60028398 60028531 -122386711 + L2 LINE L2 2594 2754 -560 189 385 30 22 chr6 60029078 60029213 -122386029 + L2 LINE L2 1293 1428 -1886 187 341 47 47 chr6 60029291 60029461 -122385781 + L2 LINE L2 1536 1705 -1609 739 297 79 39 chr6 60029513 60029971 -122385271 + MLT1H LTR MaLR 72 547 -2 1036 192 109 64 chr6 60030115 60030614 -122384628 + MLT1E1 LTR MaLR 17 626 0 233 366 81 8 chr6 60030637 60030872 -122384370 + L2 LINE L2 1854 2105 -1209 237 317 112 52 chr6 60030875 60031143 -122384099 + L2 LINE L2 2945 3228 -44 23 0 0 0 chr6 60031152 60031175 -122384067 + AT_rich Low_complexity Low_complexity 1 23 0 231 36 0 0 chr6 60032283 60032311 -122382931 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 305 314 58 41 chr6 60032311 60032432 -122382810 - L2 LINE L2 -14 3258 3136 729 227 58 0 chr6 60032826 60032998 -122382244 - MIR SINE MIR -12 250 69 247 318 167 46 chr6 60033028 60033752 -122381490 + L2 LINE L2 1806 2617 -697 222 346 45 83 chr6 60033989 60034145 -122381097 - L2 LINE L2 -6 3266 3117 374 364 56 0 chr6 60034305 60034467 -122380775 - L2 LINE L2 -1 3271 3101 305 121 0 18 chr6 60038015 60038072 -122377170 + L1MD3 LINE L1 7938 8038 -4 187 219 49 81 chr6 60038280 60038403 -122376839 + L2 LINE L2 3092 3210 -103 2556 35 6 10 chr6 60038481 60038792 -122376450 + AluY SINE Alu 1 310 -1 337 275 25 17 chr6 60038805 60038925 -122376317 + HAL1 LINE L1 1758 1878 -629 335 304 45 59 chr6 60039607 60039827 -122375415 + L1M4 LINE L1 4096 4312 -1834 28 29 0 0 chr6 60039906 60039941 -122375301 + AT_rich Low_complexity Low_complexity 1 35 0 3053 99 22 5 chr6 60039941 60040385 -122374857 - L1PA11 LINE L1 -3 6171 5720 27 62 0 0 chr6 60041593 60041641 -122373601 + AT_rich Low_complexity Low_complexity 1 48 0 246 143 0 0 chr6 60042036 60042085 -122373157 + (TG)n Simple_repeat Simple_repeat 1 49 0 36 0 0 0 chr6 60042685 60042721 -122372521 + AT_rich Low_complexity Low_complexity 1 36 0 194 91 30 0 chr6 60043092 60043125 -122372117 + (TAA)n Simple_repeat Simple_repeat 2 35 0 6990 53 0 0 chr6 60043757 60044712 -122370530 - L1PA7 LINE L1 -2 6152 5219 609 282 29 24 chr6 60044728 60044934 -122370308 + MIR SINE MIR 6 212 -50 459 321 227 21 chr6 60045151 60045759 -122369483 + L2 LINE L2 1779 2511 -803 2691 196 37 40 chr6 60046699 60046897 -122368345 - MER82 DNA MER2_type -25 628 431 2265 94 0 3 chr6 60046897 60047195 -122368047 + AluSq SINE Alu 1 297 -16 2691 196 37 40 chr6 60047195 60047614 -122367628 - MER82 DNA MER2_type -222 431 13 643 262 198 20 chr6 60047672 60048016 -122367226 - LTR16C LTR ERVL -54 437 33 1650 181 7 13 chr6 60048151 60048450 -122366792 + AluJo SINE Alu 11 307 -5 21 0 0 0 chr6 60048622 60048643 -122366599 + AT_rich Low_complexity Low_complexity 1 21 0 396 330 55 21 chr6 60049245 60049481 -122365761 - L1ME LINE L1 -420 5701 5458 553 290 74 35 chr6 60049481 60049712 -122365530 - MIR SINE MIR -20 242 3 309 185 0 46 chr6 60051123 60051188 -122364054 + MER5B DNA MER1_type 1 62 -116 270 279 29 58 chr6 60051220 60051324 -122363918 + MER5A DNA MER1_type 82 182 -7 2916 201 30 32 chr6 60052979 60053691 -122361551 - MER67C LTR ERV1 0 710 1 349 322 68 7 chr6 60055017 60055163 -122360079 - L3 LINE CR1 -6 1571 1417 261 342 149 25 chr6 60055264 60055425 -122359817 + MIR SINE MIR 79 259 -3 583 263 108 39 chr6 60058085 60058317 -122356925 - MIR SINE MIR 0 262 15 492 341 31 7 chr6 60058585 60058996 -122356246 - L1ME3A LINE L1 -244 5926 5493 193 290 174 51 chr6 60059101 60059167 -122356075 - MIR SINE MIR -47 215 159 2082 164 41 27 chr6 60059167 60059605 -122355637 - MER65A LTR ERV1 0 445 2 193 290 174 51 chr6 60059605 60059676 -122355566 - MIR SINE MIR -103 159 61 182 273 94 62 chr6 60059757 60059885 -122355357 - L2 LINE L2 -1905 1409 1278 772 250 158 13 chr6 60059966 60060194 -122355048 - LTR16C LTR ERVL -2 489 229 227 283 11 11 chr6 60064413 60064505 -122350737 + (CA)n Simple_repeat Simple_repeat 2 93 0 235 210 100 60 chr6 60064769 60064869 -122350373 - MER117 DNA MER1_type -93 104 1 307 287 8 57 chr6 60065584 60065706 -122349536 + MLT1L LTR MaLR 180 295 -320 845 354 23 30 chr6 60065712 60066108 -122349134 + L1MB7 LINE L1 414 806 -5497 7294 42 0 18 chr6 60066248 60067457 -122347785 - L1PA5 LINE L1 -2 6152 4955 1306 264 44 17 chr6 60067814 60068334 -122346908 + L1MB7 LINE L1 1088 1621 -4682 5859 230 62 40 chr6 60068336 60070101 -122345141 + L1MB7 LINE L1 2166 4007 -2375 1989 71 54 17 chr6 60070101 60070395 -122344847 + AluY SINE Alu 7 311 0 5859 230 62 40 chr6 60070395 60070752 -122344490 + L1MB7 LINE L1 4007 4354 -2028 1092 204 25 0 chr6 60070753 60070998 -122344244 + L1MB7 LINE L1 4680 4930 -1452 7178 54 1 0 chr6 60071000 60071947 -122343295 + L1PA5 LINE L1 5200 6147 -7 356 280 0 50 chr6 60072080 60072180 -122343062 + MLT1L LTR MaLR 419 513 -102 313 109 0 0 chr6 60072177 60072223 -122343019 + MLT1K LTR MaLR 519 564 -24 * 2265 216 44 14 chr6 60072330 60072894 -122342348 + L1MB7 LINE L1 5829 6409 -11 386 299 19 58 chr6 60072943 60073251 -122341991 + HAL1b LINE L1 350 645 -703 482 201 17 84 chr6 60073376 60073555 -122341687 + L1MC5 LINE L1 7360 7526 -435 270 274 89 59 chr6 60073636 60073771 -122341471 + L1ME3A LINE L1 5964 6102 -68 317 278 114 34 chr6 60073862 60074038 -122341204 - MIR SINE MIR 0 262 73 214 149 0 202 chr6 60074162 60074256 -122340986 - L2 LINE L2 -4 3309 3235 231 36 0 0 chr6 60074642 60074670 -122340572 + (TC)n Simple_repeat Simple_repeat 1 28 0 184 352 259 5 chr6 60074760 60074976 -122340266 + L3 LINE CR1 1288 1558 -19 301 227 31 10 chr6 60075217 60075322 -122339920 + MIR SINE MIR 39 146 -62 552 278 72 6 chr6 60075835 60076015 -122339227 + MIR SINE MIR 20 211 -51 740 294 51 13 chr6 60077358 60077593 -122337649 + MIR SINE MIR 19 262 0 246 342 0 0 chr6 60078149 60078228 -122337014 - L2 LINE L2 -6 3307 3229 225 0 0 0 chr6 60078387 60078412 -122336830 + (T)n Simple_repeat Simple_repeat 1 25 0 312 266 58 72 chr6 60079153 60079292 -122335950 - L2 LINE L2 -222 3050 2914 808 316 62 15 chr6 60079353 60079758 -122335484 - LTR16A LTR ERVL -9 441 18 615 333 51 54 chr6 60079787 60080178 -122335064 - L2 LINE L2 -465 2849 2460 260 290 99 85 chr6 60080244 60080596 -122334646 + MLT1I LTR MaLR 42 398 -11 327 25 0 0 chr6 60080636 60080676 -122334566 + (TG)n Simple_repeat Simple_repeat 2 41 0 357 320 73 24 chr6 60080677 60080883 -122334359 - L2 LINE L2 -911 2403 2188 188 216 0 0 chr6 60082478 60082515 -122332727 - L2 LINE L2 -12 3301 3265 202 267 9 121 chr6 60083073 60083189 -122332053 + MER5B DNA MER1_type 76 178 0 1871 123 3 17 chr6 60083472 60083773 -122331469 - L1PA15 LINE L1 0 6165 5869 9806 221 36 17 chr6 60083776 60085841 -122329401 - L1PA13 LINE L1 -3404 3393 1230 198 0 0 0 chr6 60085841 60085863 -122329379 + (CAG)n Simple_repeat Simple_repeat 1 22 0 9806 221 36 17 chr6 60085863 60087117 -122328125 - L1PA13 LINE L1 -5567 1230 1 338 283 34 51 chr6 60087361 60087538 -122327704 - MIR SINE MIR -40 222 49 7620 23 0 0 chr6 60087673 60088610 -122326632 - L1PA4 LINE L1 -3 6152 5218 10756 37 1 1 chr6 60088610 60089919 -122325323 + L1PA4 LINE L1 3903 5211 -935 526 368 143 16 chr6 60090092 60090608 -122324634 + L2 LINE L2 2181 2762 -552 259 281 16 74 chr6 60090608 60090729 -122324513 - LTR67 LTR ERVL -10 547 434 306 343 60 101 chr6 60091129 60091476 -122323766 + L2 LINE L2 2940 3272 0 237 33 0 0 chr6 60093237 60093267 -122321975 + (CA)n Simple_repeat Simple_repeat 2 31 0 717 257 44 5 chr6 60093885 60094091 -122321151 - MER20 DNA MER1_type -5 214 1 567 264 71 5 chr6 60094138 60094335 -122320907 - Charlie7 DNA MER1_type -2181 431 222 5190 165 33 6 chr6 60094442 60095461 -122319781 + L1MA8 LINE L1 5058 6113 -178 1322 235 52 3 chr6 60095461 60095789 -122319453 - MER2 DNA MER2_type 0 344 1 5190 165 33 6 chr6 60095789 60095973 -122319269 + L1MA8 LINE L1 6113 6291 0 238 374 138 9 chr6 60096323 60096657 -122318585 - L2 LINE L2 -1812 1502 1126 * 1217 281 102 23 chr6 60096656 60097184 -122318058 - L2 LINE L2 0 3313 2733 598 300 86 0 chr6 60097380 60097600 -122317642 - MIR SINE MIR 0 262 21 870 134 0 25 chr6 60097607 60097764 -122317478 - L1MA9 LINE L1 -1 6311 6159 257 180 0 16 chr6 60097764 60097825 -122317417 + CT-rich Low_complexity Low_complexity 2 61 0 22 0 0 0 chr6 60098063 60098085 -122317157 + AT_rich Low_complexity Low_complexity 1 22 0 419 230 40 88 chr6 60098235 60098383 -122316859 - MIR3 SINE MIR -62 146 6 191 111 0 28 chr6 60099716 60099752 -122315490 + (TTTC)n Simple_repeat Simple_repeat 1 35 0 279 0 0 0 chr6 60100757 60100857 -122314385 + (TG)n Simple_repeat Simple_repeat 1 100 0 1672 169 13 13 chr6 60100800 60100826 -122314416 - AluJo SINE Alu -6 306 281 279 0 0 0 chr6 60100826 60100857 -122314385 + (TG)n Simple_repeat Simple_repeat 1 31 0 1672 169 13 13 chr6 60100857 60101131 -122314111 - AluJo SINE Alu -30 282 6 607 196 23 11 chr6 60101170 60101492 -122313750 + CT-rich Low_complexity Low_complexity 1 325 0 793 193 15 0 chr6 60101510 60101777 -122313465 + CT-rich Low_complexity Low_complexity 1 271 0 470 323 82 8 chr6 60102060 60102450 -122312792 - L1ME LINE L1 -413 5753 5325 364 385 36 9 chr6 60102450 60102782 -122312460 - L1ME LINE L1 -1398 4748 4408 1398 163 4 12 chr6 60102795 60103046 -122312196 - AluJb SINE Alu 0 312 64 29 0 0 0 chr6 60103051 60103080 -122312162 + AT_rich Low_complexity Low_complexity 1 29 0 303 286 109 24 chr6 60103200 60103448 -122311794 + L1M4 LINE L1 4007 4275 -1871 458 311 17 28 chr6 60103457 60103637 -122311605 + Charlie8 DNA MER1_type 88 265 -2152 206 323 16 0 chr6 60103701 60103763 -122311479 + MER91 DNA MER1_type 78 140 0 368 192 0 14 chr6 60104228 60104301 -122310941 - MIR SINE MIR -6 256 185 38 75 0 0 chr6 60104465 60104545 -122310697 + AT_rich Low_complexity Low_complexity 1 80 0 554 262 99 36 chr6 60105121 60105342 -122309900 - MLT1J LTR MaLR -274 237 3 1568 178 16 35 chr6 60106137 60106451 -122308791 + AluJo SINE Alu 1 308 -4 1850 317 111 29 chr6 60107808 60108040 -122307202 + L2 LINE L2 1395 1607 -1707 2624 115 0 6 chr6 60108040 60108406 -122306836 + THE1B LTR MaLR 1 364 0 1850 317 111 29 chr6 60108406 60109275 -122305967 + L2 LINE L2 1607 2586 -728 385 262 86 48 chr6 60109315 60109525 -122305717 - L2 LINE L2 -460 2854 2637 1662 135 4 26 chr6 60112771 60113037 -122302205 + AluSx SINE Alu 1 260 -52 185 83 28 0 chr6 60113062 60113098 -122302144 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2063 146 0 0 chr6 60114423 60114725 -122300517 + AluSx SINE Alu 1 302 -10 700 291 132 48 chr6 60114880 60115296 -122299946 - MLT1H LTR MaLR 0 549 99 320 248 45 90 chr6 60116188 60116454 -122298788 + MER112 DNA MER1_type 7 260 0 21 0 0 0 chr6 60116961 60116982 -122298260 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr6 60117016 60117080 -122298162 + AT_rich Low_complexity Low_complexity 1 64 0 30244 123 9 59 chr6 60117911 60124417 -122290825 + L1PA7 LINE L1 12 6154 0 355 315 81 7 chr6 60125226 60125375 -122289867 - MIR SINE MIR -1 261 102 381 331 29 0 chr6 60126874 60127013 -122288229 + MIR SINE MIR 116 258 -4 24 32 0 0 chr6 60127323 60127354 -122287888 + AT_rich Low_complexity Low_complexity 1 31 0 29 47 0 0 chr6 60127750 60127793 -122287449 + AT_rich Low_complexity Low_complexity 1 43 0 2165 114 0 3 chr6 60128001 60128308 -122286934 - AluSx SINE Alu -6 306 1 21 36 0 0 chr6 60129022 60129050 -122286192 + AT_rich Low_complexity Low_complexity 1 28 0 2216 89 10 13 chr6 60129194 60129498 -122285744 + AluSc SINE Alu 1 303 -6 308 230 0 23 chr6 60129775 60129862 -122285380 + HsTC2 DNA Tc2 2 86 -1812 630 271 78 67 chr6 60129916 60130277 -122284965 - MLT1J LTR MaLR 0 511 147 299 210 16 0 chr6 60131060 60131122 -122284120 + MLT1J LTR MaLR 429 491 -20 21 0 0 0 chr6 60131150 60131171 -122284071 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 60131686 60131709 -122283533 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 60132318 60132347 -122282895 + AT_rich Low_complexity Low_complexity 1 29 0 203 322 27 62 chr6 60132634 60132780 -122282462 + MIR SINE MIR 78 218 -44 189 0 0 0 chr6 60132817 60132838 -122282404 + (TG)n Simple_repeat Simple_repeat 1 21 0 2169 86 0 36 chr6 60133116 60133420 -122281822 - AluSg SINE Alu -15 295 3 31 26 0 0 chr6 60133873 60133911 -122281331 + AT_rich Low_complexity Low_complexity 1 38 0 382 358 74 6 chr6 60136116 60136278 -122278964 - MIR3 SINE MIR -19 189 17 27 29 0 0 chr6 60136618 60136652 -122278590 + AT_rich Low_complexity Low_complexity 1 34 0 367 225 93 62 chr6 60136967 60137096 -122278146 + L2 LINE L2 3140 3272 0 260 359 38 0 chr6 60137711 60137817 -122277425 - L2 LINE L2 -4 3309 3200 1290 204 101 26 chr6 60139183 60139531 -122275711 - MLT1A2 LTR MaLR 0 374 1 26 30 0 0 chr6 60139882 60139915 -122275327 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr6 60140089 60140111 -122275131 + AT_rich Low_complexity Low_complexity 1 22 0 41 66 0 0 chr6 60140722 60140798 -122274444 + AT_rich Low_complexity Low_complexity 1 76 0 228 345 54 47 chr6 60141154 60141504 -122273738 + L2 LINE L2 2741 3084 -188 21 0 0 0 chr6 60143163 60143184 -122272058 + AT_rich Low_complexity Low_complexity 1 21 0 253 323 30 30 chr6 60143346 60143447 -122271795 + MIR SINE MIR 20 121 -87 219 286 32 0 chr6 60143680 60143743 -122271499 - L2 LINE L2 -3 3269 3205 288 0 0 0 chr6 60146469 60146501 -122268741 + (TG)n Simple_repeat Simple_repeat 2 33 0 351 136 0 0 chr6 60146590 60146649 -122268593 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 324 0 0 0 chr6 60147001 60147037 -122268205 + (TG)n Simple_repeat Simple_repeat 2 37 0 351 136 0 0 chr6 60147126 60147185 -122268057 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 272 224 0 0 chr6 60147257 60147306 -122267936 - L1ME LINE L1 -583 5538 5490 1704 158 42 7 chr6 60147543 60147827 -122267415 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr6 60148009 60148032 -122267210 + AT_rich Low_complexity Low_complexity 1 23 0 2800 274 123 48 chr6 60148063 60149754 -122265488 + L2 LINE L2 1526 3313 0 491 297 6 0 chr6 60151589 60151764 -122263478 - MER104 DNA MER2_type -4 176 1 328 337 17 59 chr6 60152079 60152551 -122262691 + Tigger1 DNA MER2_type 2 453 -1965 198 0 0 0 chr6 60153247 60153269 -122261973 + (T)n Simple_repeat Simple_repeat 1 22 0 10759 145 8 6 chr6 60153269 60153666 -122261576 + Tigger1 DNA MER2_type 55 450 -1968 1914 128 163 19 chr6 60153666 60154040 -122261202 - MSTA LTR MaLR 0 428 1 10759 145 8 6 chr6 60154040 60155362 -122259880 + Tigger1 DNA MER2_type 450 1777 -641 181 300 184 28 chr6 60155654 60155974 -122259268 - L2 LINE L2 -558 2756 2387 344 374 92 44 chr6 60156212 60156755 -122258487 - L2 LINE L2 -1691 1623 1055 25 31 0 0 chr6 60156883 60156915 -122258327 + AT_rich Low_complexity Low_complexity 1 32 0 278 67 22 0 chr6 60157163 60157208 -122258034 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 512 352 62 30 chr6 60157699 60158068 -122257174 - MLT1J2 LTR MaLR 0 450 70 595 237 17 0 chr6 60158284 60158402 -122256840 + FLAM_A SINE Alu 1 120 -13 188 208 125 83 chr6 60158500 60158596 -122256646 - MIR SINE MIR -77 185 86 258 32 0 0 chr6 60158650 60158681 -122256561 + (TG)n Simple_repeat Simple_repeat 1 31 0 266 106 21 0 chr6 60158979 60159026 -122256216 + (GA)n Simple_repeat Simple_repeat 1 48 0 309 357 45 48 chr6 60159111 60159380 -122255862 - L2 LINE L2 -191 3081 2814 194 351 0 40 chr6 60159803 60159877 -122255365 - L2 LINE L2 -81 3191 3121 1550 201 67 9 chr6 60160143 60160486 -122254756 - MLT1A1 LTR MaLR 0 365 3 245 172 30 20 chr6 60160605 60160704 -122254538 + (TTATA)n Simple_repeat Simple_repeat 5 104 0 61 58 0 0 chr6 60160711 60160814 -122254428 + AT_rich Low_complexity Low_complexity 1 103 0 27 29 0 0 chr6 60161865 60161899 -122253343 + AT_rich Low_complexity Low_complexity 1 34 0 386 323 6 12 chr6 60162355 60162519 -122252723 - L2 LINE L2 -1232 2082 1920 35 63 0 0 chr6 60162824 60162887 -122252355 + AT_rich Low_complexity Low_complexity 1 63 0 326 287 23 0 chr6 60162905 60162992 -122252250 - L2 LINE L2 0 3272 3184 261 0 0 0 chr6 60163512 60163541 -122251701 + (TG)n Simple_repeat Simple_repeat 2 30 0 501 284 131 0 chr6 60163611 60163787 -122251455 + MIR SINE MIR 5 203 -59 43 20 0 0 chr6 60163940 60163990 -122251252 + AT_rich Low_complexity Low_complexity 1 50 0 2426 97 0 0 chr6 60164383 60164693 -122250549 - AluSq SINE Alu -3 310 1 347 157 14 0 chr6 60165114 60165184 -122250058 + (TA)n Simple_repeat Simple_repeat 2 72 0 250 289 66 0 chr6 60165891 60165990 -122249252 + MIR SINE MIR 56 159 -49 563 261 121 13 chr6 60165998 60166155 -122249087 - MER58A DNA MER1_type -49 175 2 189 256 0 0 chr6 60166165 60166204 -122249038 + MIR3 SINE MIR 159 197 -11 198 260 70 90 chr6 60166939 60167039 -122248203 + L2 LINE L2 2324 2421 -893 439 282 34 0 chr6 60168033 60168150 -122247092 - L2 LINE L2 0 3313 3193 414 313 135 37 chr6 60168144 60168502 -122246740 + L2 LINE L2 2576 2977 -336 * 1930 141 0 0 chr6 60169620 60169933 -122245309 + AluSx SINE Alu 1 313 0 219 276 214 14 chr6 60171665 60171810 -122243432 + MIR SINE MIR 41 214 -48 27 29 0 0 chr6 60171924 60171958 -122243284 + AT_rich Low_complexity Low_complexity 1 34 0 3245 72 7 0 chr6 60172172 60172600 -122242642 - L1PA7 LINE L1 -1 6153 5723 223 123 12 49 chr6 60173321 60173402 -122241840 + (TA)n Simple_repeat Simple_repeat 2 79 0 207 100 0 0 chr6 60173438 60173468 -122241774 + (TA)n Simple_repeat Simple_repeat 2 31 0 231 196 18 18 chr6 60173490 60173546 -122241696 + (TA)n Simple_repeat Simple_repeat 2 57 0 26 50 0 0 chr6 60174017 60174057 -122241185 + AT_rich Low_complexity Low_complexity 1 40 0 357 407 0 0 chr6 60174670 60174805 -122240437 + L2 LINE L2 3138 3272 0 29 0 0 0 chr6 60174845 60174874 -122240368 + AT_rich Low_complexity Low_complexity 1 29 0 230 162 0 0 chr6 60174926 60174963 -122240279 - LTR40a LTR ERVL 0 519 483 1648 245 66 56 chr6 60175096 60175705 -122239537 + LTR68 LTR ERV1 126 740 0 21 0 0 0 chr6 60175756 60175777 -122239465 + AT_rich Low_complexity Low_complexity 1 21 0 4707 61 3 0 chr6 60176154 60176748 -122238494 + L1PA7 LINE L1 5552 6147 -7 308 319 56 19 chr6 60176964 60177124 -122238118 + L1ME3 LINE L1 1554 1719 -4677 1836 244 78 31 chr6 60177149 60178267 -122236975 + L1ME3 LINE L1 2627 3966 -2249 2120 118 3 16 chr6 60178267 60178582 -122236660 - AluSx SINE Alu -1 311 1 1836 244 78 31 chr6 60178582 60178627 -122236615 + L1ME3 LINE L1 3966 4007 -2208 1251 239 76 63 chr6 60178628 60179009 -122236233 - MLT1E3 LTR MaLR -4 620 204 914 245 69 38 chr6 60179099 60179721 -122235521 + L1ME3 LINE L1 4993 5637 -596 871 250 115 44 chr6 60179730 60180114 -122235128 + L1ME3 LINE L1 5814 6224 -7 364 387 62 41 chr6 60181473 60181892 -122233350 + L2 LINE L2 2827 3254 -18 448 269 37 0 chr6 60183701 60183835 -122231407 - LTR16C LTR ERVL -7 484 346 463 332 80 0 chr6 60183906 60184093 -122231149 - LTR16C LTR ERVL -285 206 5 870 311 105 12 chr6 60184866 60185284 -122229958 - LTR33A LTR ERVL -2 521 65 1408 203 142 72 chr6 60185643 60186215 -122229027 - LTR9 LTR ERV1 0 612 1 526 316 27 7 chr6 60187210 60187405 -122227837 + MIR SINE MIR 3 198 -64 659 203 56 7 chr6 60187408 60187551 -122227691 + MER33 DNA MER1_type 1 150 -174 2368 77 3 0 chr6 60187553 60187852 -122227390 + AluY SINE Alu 2 301 -10 328 296 107 6 chr6 60188372 60188531 -122226711 - MIR SINE MIR -64 198 24 3893 73 8 0 chr6 60188552 60189061 -122226181 + L1P LINE L1 5 517 -5629 510 243 0 43 chr6 60189162 60189347 -122225895 + Charlie1 DNA MER1_type 2570 2746 -15 32 91 0 0 chr6 60189440 60189528 -122225714 + AT_rich Low_complexity Low_complexity 1 88 0 341 203 13 38 chr6 60189609 60189688 -122225554 - MER5B DNA MER1_type -2 176 100 295 266 53 21 chr6 60189989 60190083 -122225159 + MER101B LTR ERV1 198 294 -276 884 184 7 7 chr6 60190126 60190278 -122224964 - AluJo SINE Alu -46 266 115 2337 81 0 3 chr6 60190475 60190782 -122224460 - AluY SINE Alu -5 306 1 216 246 29 0 chr6 60190874 60190960 -122224282 + (TA)n Simple_repeat Simple_repeat 1 88 0 292 172 29 3 chr6 60191277 60191345 -122223897 - L1MB8 LINE L1 -199 5965 5894 750 164 64 0 chr6 60191735 60191875 -122223367 + THE1C LTR MaLR 27 175 -200 1484 266 59 37 chr6 60191981 60192664 -122222578 - L1MC4 LINE L1 -633 7409 6712 8372 46 0 4 chr6 60192805 60193877 -122221365 - L1P LINE L1 -2128 4018 2951 382 239 108 74 chr6 60193977 60194153 -122221089 + MIR3 SINE MIR 1 182 -26 2883 124 140 22 chr6 60195627 60196176 -122219066 - LTR18B LTR ERVL 0 614 1 3085 282 11 13 chr6 60196705 60197535 -122217707 - HERV17 LTR ERV1 -2746 3903 3076 201 98 24 24 chr6 60197542 60197583 -122217659 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2006 164 16 42 chr6 60197586 60198001 -122217241 - HERV17 LTR ERV1 -3568 3081 956 26 0 0 0 chr6 60198289 60198315 -122216927 + AT_rich Low_complexity Low_complexity 1 26 0 1407 170 17 94 chr6 60199020 60199425 -122215817 - L1MC3 LINE L1 -15 7770 7397 2416 45 0 0 chr6 60199540 60199829 -122215413 - L1P LINE L1 -5500 646 358 * 7061 34 0 0 chr6 60199822 60200684 -122214558 + L1P LINE L1 4442 5303 -843 198 330 28 38 chr6 60200864 60200970 -122214272 - L2 LINE L2 -788 2526 2422 197 162 0 0 chr6 60201112 60201149 -122214093 + L2 LINE L2 3277 3313 0 2608 39 3 0 chr6 60201393 60201701 -122213541 - AluY SINE Alu -2 309 1 221 258 45 0 chr6 60201882 60201948 -122213294 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 2056 129 3 0 chr6 60202358 60202644 -122212598 - AluSx SINE Alu -20 292 6 1759 98 11 33 chr6 60203239 60203514 -122211728 - MER66-int LTR ERV1 -4510 2139 1871 * 2499 222 122 48 chr6 60203508 60204257 -122210985 - MER66-int LTR ERV1 -5013 1636 833 1499 246 55 55 chr6 60204229 60204830 -122210412 - MER66-int LTR ERV1 -6614 1171 571 * 5666 40 3 0 chr6 60204936 60205627 -122209615 - L1P LINE L1 -1575 4571 3879 4684 81 0 2 chr6 60205617 60206261 -122208981 - L1P LINE L1 -3142 3004 2362 * 340 215 0 0 chr6 60206400 60206465 -122208777 + L1PA15-16 LINE L1 2830 2894 -3955 2077 153 11 25 chr6 60206465 60206825 -122208417 - THE1A LTR MaLR 0 355 1 7079 117 20 2 chr6 60206825 60207830 -122207412 - THE1A-int LTR MaLR 0 1580 558 1491 239 5 0 chr6 60207829 60208205 -122207037 + L1P LINE L1 4906 5283 -863 * 250 160 0 0 chr6 60208330 60208380 -122206862 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 912 133 38 0 chr6 60208380 60208538 -122206704 - L1MA5A LINE L1 -92 6205 6042 203 297 94 43 chr6 60208827 60208965 -122206277 + MIR SINE MIR 118 262 0 443 250 88 25 chr6 60209303 60209463 -122205779 - MIR SINE MIR -50 212 43 1904 150 0 16 chr6 60209494 60209801 -122205441 - AluJo SINE Alu -10 302 1 236 204 0 0 chr6 60210052 60210101 -122205141 + T-rich Low_complexity Low_complexity 1 49 0 590 304 62 18 chr6 60210832 60211059 -122204183 + MIR SINE MIR 1 237 -25 474 250 50 0 chr6 60211234 60211354 -122203888 - MER94 DNA DNA -1 133 8 8761 35 1 1 chr6 60211601 60212673 -122202569 - L1P LINE L1 -905 5241 4170 354 311 15 15 chr6 60213181 60213397 -122201845 - MER66-int LTR ERV1 -5043 1633 526 237 143 0 20 chr6 60214120 60214169 -122201073 - LTR26 LTR ERV1 -555 48 1 876 190 23 56 chr6 60214420 60214636 -122200606 + LOR1a LTR ERV1 289 497 0 208 390 6 41 chr6 60214740 60214912 -122200330 + L2 LINE L2 2926 3091 -181 734 261 50 33 chr6 60215710 60216070 -122199172 - MER69 DNA AcHobo -3 2523 2158 1400 77 6 0 chr6 60216197 60216367 -122198875 - AluSx SINE Alu -139 173 3 353 107 0 0 chr6 60217446 60217502 -122197740 - Tigger5 DNA MER2_type -187 2136 2081 * 369 244 13 0 chr6 60217495 60217573 -122197669 - Tigger5 DNA MER2_type -2244 79 1 5333 170 29 18 chr6 60219117 60220511 -122194731 + L1MA4 LINE L1 4889 6300 0 2020 127 0 26 chr6 60220513 60220821 -122194421 + AluSx SINE Alu 1 300 -12 1028 51 0 0 chr6 60220838 60220956 -122194286 + AluY SINE Alu 1 118 -193 1597 208 30 46 chr6 60221160 60221628 -122193614 - MER89 LTR ERV1 0 559 1 355 274 46 57 chr6 60221628 60221803 -122193439 - MIR SINE MIR -78 184 12 1751 146 10 17 chr6 60221979 60222274 -122192968 + AluSx SINE Alu 1 293 -19 376 19 38 0 chr6 60222274 60222327 -122192915 + (TA)n Simple_repeat Simple_repeat 1 55 0 23 33 0 0 chr6 60222914 60222944 -122192298 + AT_rich Low_complexity Low_complexity 1 30 0 225 296 59 15 chr6 60224023 60224158 -122191084 + L1M4 LINE L1 3770 3910 -2236 24 0 0 0 chr6 60224183 60224207 -122191035 + AT_rich Low_complexity Low_complexity 1 24 0 299 379 37 23 chr6 60224335 60224549 -122190693 - MLT1I LTR MaLR -130 279 63 22 0 0 0 chr6 60224732 60224754 -122190488 + AT_rich Low_complexity Low_complexity 1 22 0 918 159 11 42 chr6 60224984 60225173 -122190069 + LTR5 LTR ERVK 787 969 0 2514 127 5 16 chr6 60225173 60225552 -122189690 + MER1A DNA MER1_type 53 427 -102 492 322 58 6 chr6 60225658 60225829 -122189413 + MIR SINE MIR 24 203 -59 224 167 21 0 chr6 60225829 60225877 -122189365 + (TG)n Simple_repeat Simple_repeat 1 49 0 342 273 11 0 chr6 60225877 60225965 -122189277 + L1MC4 LINE L1 6615 6703 -1339 285 102 51 0 chr6 60225972 60226031 -122189211 + (TA)n Simple_repeat Simple_repeat 1 62 0 237 264 0 0 chr6 60226596 60226649 -122188593 - MIR SINE MIR -10 252 200 189 323 15 0 chr6 60227482 60227547 -122187695 - MIR SINE MIR 0 262 197 1268 210 20 13 chr6 60227906 60228206 -122187036 - L1M4 LINE L1 -2028 4118 3817 2840 60 0 3 chr6 60228471 60228835 -122186407 - L1PA6 LINE L1 0 6154 5792 1483 91 9 5 chr6 60228644 60228854 -122186388 - L1PA6 LINE L1 -173 5981 5771 435 236 7 40 chr6 60228857 60229005 -122186237 - L1M4 LINE L1 -903 5243 5101 226 288 0 0 chr6 60229064 60229144 -122186098 + (TA)n Simple_repeat Simple_repeat 2 81 0 4983 184 12 25 chr6 60229145 60230116 -122185126 + Ricksha_b DNA DNA 1 959 -295 275 300 115 0 chr6 60230596 60230726 -122184516 - MIR SINE MIR -1 261 117 331 333 59 5 chr6 60231958 60232144 -122183098 - MLT1L LTR MaLR 0 615 420 1831 158 35 14 chr6 60232595 60232961 -122182281 + THE1C LTR MaLR 2 375 0 288 319 55 0 chr6 60233082 60233173 -122182069 - MER91A DNA MER1_type -98 98 3 309 318 64 36 chr6 60233226 60233336 -122181906 - L2 LINE L2 -4 3268 3156 686 201 78 7 chr6 60233809 60233963 -122181279 + L1MA10 LINE L1 6167 6331 -3 21 0 0 0 chr6 60234284 60234305 -122180937 + AT_rich Low_complexity Low_complexity 1 21 0 327 208 24 39 chr6 60234406 60234541 -122180701 - L1ME LINE L1 -381 5789 5655 476 286 44 22 chr6 60234549 60234731 -122180511 + MER5A DNA MER1_type 3 188 -1 206 182 23 0 chr6 60234741 60234785 -122180457 + (TA)n Simple_repeat Simple_repeat 1 45 0 294 340 21 0 chr6 60234839 60234980 -122180262 - L1ME LINE L1 -601 5565 5422 1032 146 0 0 chr6 60235183 60235348 -122179894 - L1MA4A LINE L1 -5 6298 6134 2244 76 3 13 chr6 60235524 60235825 -122179417 + AluY SINE Alu 1 298 -13 311 192 13 0 chr6 60236154 60236232 -122179010 + (TA)n Simple_repeat Simple_repeat 1 79 0 322 262 53 47 chr6 60236302 60236642 -122178600 - L1M4 LINE L1 -2791 3355 3014 183 245 38 0 chr6 60237710 60237763 -122177479 + MIR SINE MIR 78 132 -130 194 361 0 0 chr6 60237790 60237851 -122177391 - L2 LINE L2 -13 3259 3199 333 301 141 47 chr6 60238619 60239113 -122176129 - L2 LINE L2 -19 3294 2746 514 312 247 22 chr6 60239117 60239578 -122175664 - L2 LINE L2 -422 2892 2328 2887 53 3 5 chr6 60240058 60240433 -122174809 - L1PA5 LINE L1 0 6154 5781 23 0 0 0 chr6 60240638 60240661 -122174581 + AT_rich Low_complexity Low_complexity 1 23 0 40 87 0 0 chr6 60241793 60241896 -122173346 + AT_rich Low_complexity Low_complexity 1 103 0 270 106 0 0 chr6 60241905 60241952 -122173290 + (CATA)n Simple_repeat Simple_repeat 2 48 0 271 285 14 95 chr6 60242092 60242313 -122172929 - MLT1K LTR MaLR -13 575 373 778 211 43 27 chr6 60242428 60242613 -122172629 + MER5A DNA MER1_type 2 189 0 280 308 19 37 chr6 60243036 60243143 -122172099 - MIR SINE MIR -97 165 61 18993 39 0 1 chr6 60243999 60247114 -122168128 - L1PA3 LINE L1 -3 6152 3039 255 182 36 0 chr6 60247523 60247578 -122167664 + LTR67 LTR ERVL 457 513 -44 864 179 25 20 chr6 60247580 60247781 -122167461 - L1 LINE L1 -3104 2866 2665 1607 275 55 24 chr6 60247794 60248449 -122166793 - L1 LINE L1 -3490 2480 1757 366 23 0 0 chr6 60248449 60248492 -122166750 + (TG)n Simple_repeat Simple_repeat 2 44 0 1607 275 55 24 chr6 60248492 60249037 -122166205 - L1 LINE L1 -4213 1757 1230 1755 300 41 49 chr6 60249038 60250275 -122164967 - L1 LINE L1 -4895 996 2 497 289 102 6 chr6 60250434 60250749 -122164493 - L1M4 LINE L1 -3000 3146 2802 555 373 62 8 chr6 60250897 60251254 -122163988 + L2 LINE L2 1498 1873 -1441 832 351 34 29 chr6 60252518 60252736 -122162506 + L1MEc LINE L1 32 247 -6149 414 0 0 0 chr6 60252736 60252782 -122162460 + (TG)n Simple_repeat Simple_repeat 2 47 0 832 351 34 29 chr6 60252782 60253179 -122162063 + L1MEc LINE L1 247 650 -5746 5622 113 5 9 chr6 60253204 60254061 -122161181 - L1PA13 LINE L1 -4 6159 5307 1213 283 45 18 chr6 60254062 60254783 -122160459 + L1MEc LINE L1 673 1281 -4832 585 287 48 48 chr6 60254793 60255061 -122160181 - MLT1H LTR MaLR -142 407 140 204 217 0 0 chr6 60255081 60255127 -122160115 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 248 173 0 0 chr6 60255127 60255179 -122160063 - L1MC4 LINE L1 -1339 6703 6652 2718 91 3 10 chr6 60255554 60255939 -122159303 - L1PA13 LINE L1 -1 6162 5781 478 274 64 99 chr6 60256033 60256274 -122158968 + L1MEc LINE L1 865 1113 -5092 306 0 0 0 chr6 60256274 60256308 -122158934 + (TA)n Simple_repeat Simple_repeat 2 35 0 2240 106 7 0 chr6 60256308 60256611 -122158631 - AluSg SINE Alu -5 305 1 478 274 64 99 chr6 60256611 60256773 -122158469 + L1MEc LINE L1 1111 1255 -4950 372 263 22 104 chr6 60256780 60257097 -122158145 + L1MEc LINE L1 1519 1755 -861 367 309 122 16 chr6 60257328 60257574 -122157668 + L1MEc LINE L1 2023 2294 -4102 192 107 0 0 chr6 60257589 60257617 -122157625 - L2 LINE L2 -19 3294 3267 27 29 0 0 chr6 60258569 60258603 -122156639 + AT_rich Low_complexity Low_complexity 1 34 0 491 333 58 24 chr6 60258694 60258988 -122156254 + L2 LINE L2 3009 3312 -1 1244 223 42 3 chr6 60259759 60260046 -122155196 + L1MEc LINE L1 3463 3764 -2451 288 0 0 0 chr6 60260046 60260078 -122155164 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1244 223 42 3 chr6 60260078 60260100 -122155142 + L1MEc LINE L1 3764 3784 -2431 * 6126 154 26 54 chr6 60260099 60262426 -122152816 + L1MA9 LINE L1 4116 6380 -1 193 152 196 0 chr6 60263362 60263408 -122151834 + L2 LINE L2 3205 3259 -54 369 102 0 0 chr6 60263423 60263482 -122151760 + (TGAA)n Simple_repeat Simple_repeat 3 61 0 284 333 50 7 chr6 60264326 60264467 -122150775 + L3 LINE CR1 1425 1571 -6 26 0 0 0 chr6 60264547 60264573 -122150669 + AT_rich Low_complexity Low_complexity 1 26 0 231 288 0 0 chr6 60264753 60264826 -122150416 + T-rich Low_complexity Low_complexity 1 73 0 629 236 168 0 chr6 60265441 60265602 -122149640 - MER5A DNA MER1_type 0 189 2 465 326 111 51 chr6 60266573 60266987 -122148255 - MLT1K LTR MaLR -17 571 133 515 256 168 56 chr6 60267555 60268124 -122147118 + L2 LINE L2 2672 3313 0 390 109 0 0 chr6 60268527 60268582 -122146660 - MLT2A2 LTR ERVL 0 453 399 324 258 22 11 chr6 60268606 60268695 -122146547 - L1MC4 LINE L1 -1339 6703 6614 2858 86 20 8 chr6 60268707 60269102 -122146140 - MLT2A1 LTR ERVL -44 400 1 408 245 71 10 chr6 60269900 60269998 -122145244 + L2 LINE L2 3204 3307 -6 281 220 0 0 chr6 60270419 60270469 -122144773 + LTR67 LTR ERVL 507 556 -1 1550 205 30 0 chr6 60270523 60270820 -122144422 - MLT1A1 LTR MaLR -2 363 58 238 254 28 0 chr6 60270846 60270917 -122144325 - MLT1A1 LTR MaLR -301 73 1 21 0 0 0 chr6 60271662 60271683 -122143559 + AT_rich Low_complexity Low_complexity 1 21 0 619 230 78 41 chr6 60272035 60272305 -122142937 - HAL1 LINE L1 -955 1552 1273 291 264 55 55 chr6 60272390 60272591 -122142651 - HAL1 LINE L1 -1384 1123 923 15057 160 29 25 chr6 60272595 60276723 -122138519 - L1MA1 LINE L1 0 7721 3611 2066 118 6 13 chr6 60276723 60277038 -122138204 - AluSp SINE Alu 0 313 1 15057 160 29 25 chr6 60277038 60279505 -122135737 - L1MA1 LINE L1 -4110 3611 1070 3723 155 39 74 chr6 60279505 60280318 -122134924 - LTR1 LTR ERV1 0 785 1 15057 160 29 25 chr6 60280318 60281388 -122133854 - L1MA1 LINE L1 -6651 1070 6 505 279 12 18 chr6 60281393 60281558 -122133684 - HAL1 LINE L1 -1610 897 734 263 326 104 14 chr6 60281567 60281711 -122133531 + MIR SINE MIR 74 230 -32 837 179 0 7 chr6 60281723 60281874 -122133368 - LTR32 LTR ERVL -5 466 317 232 167 71 0 chr6 60281874 60281916 -122133326 - LTR32 LTR ERVL -103 368 324 1914 179 24 18 chr6 60282005 60282335 -122132907 - LTR32 LTR ERVL -119 352 21 600 311 55 25 chr6 60282461 60282696 -122132546 + MIR SINE MIR 8 249 -13 883 245 57 5 chr6 60282899 60283111 -122132131 - MER58A DNA MER1_type -1 223 1 217 283 132 13 chr6 60284693 60284822 -122130420 - MIR SINE MIR -13 249 104 192 77 0 0 chr6 60285428 60285454 -122129788 + (CAA)n Simple_repeat Simple_repeat 1 26 0 224 392 21 0 chr6 60285841 60285938 -122129304 + MIR SINE MIR 53 151 -111 251 372 103 0 chr6 60285941 60286086 -122129156 - L2 LINE L2 0 3313 3154 1149 294 173 12 chr6 60286360 60286789 -122128453 + MLT1E LTR MaLR 19 516 -77 4513 190 21 45 chr6 60286835 60288183 -122127059 - L1MB3 LINE L1 -8 6175 4848 * 5734 166 48 9 chr6 60288179 60288241 -122127001 + L1M4c LINE L1 1196 1254 -5130 258 32 0 0 chr6 60288241 60288272 -122126970 + (TA)n Simple_repeat Simple_repeat 1 31 0 5734 166 48 9 chr6 60288272 60289338 -122125904 + L1M4c LINE L1 1254 2368 -4016 355 325 73 15 chr6 60289415 60289621 -122125621 + LTR16C LTR ERVL 243 460 -31 192 375 106 19 chr6 60289675 60289931 -122125311 - L2 LINE L2 -662 2652 2375 432 349 57 29 chr6 60290069 60290384 -122124858 + LTR16C LTR ERVL 168 491 0 2112 94 44 96 chr6 60290510 60290728 -122124514 - THE1B LTR MaLR 0 364 173 2229 107 0 22 chr6 60290728 60291046 -122124196 + AluSq SINE Alu 2 312 -1 2112 94 44 96 chr6 60291046 60291211 -122124031 - THE1B LTR MaLR -191 173 1 240 370 30 12 chr6 60291237 60291402 -122123840 - L2 LINE L2 -1896 1418 1251 24 0 0 0 chr6 60291418 60291442 -122123800 + AT_rich Low_complexity Low_complexity 1 24 0 311 295 58 45 chr6 60293276 60293432 -122121810 + MIR SINE MIR 84 241 -21 23844 59 2 1 chr6 60293621 60296704 -122118538 - L1PA5 LINE L1 -1912 4234 1150 9269 42 4 1 chr6 60296685 60298546 -122116696 + L1PA5 LINE L1 4237 6099 -55 * 230 233 0 17 chr6 60298546 60298606 -122116636 + LTR37B LTR ERV1 5 63 -405 999 174 22 5 chr6 60301942 60302126 -122113116 - MER5A DNA MER1_type -2 187 1 315 289 145 24 chr6 60302276 60302525 -122112717 + L2 LINE L2 3035 3313 0 720 64 0 0 chr6 60304053 60304080 -122111162 + (TTCC)n Simple_repeat Simple_repeat 1 121 0 720 64 0 0 chr6 60304080 60304174 -122111068 + (TTCC)n Simple_repeat Simple_repeat 2 95 0 441 290 161 44 chr6 60304301 60304549 -122110693 - L2 LINE L2 -27 3286 3010 699 336 30 11 chr6 60304585 60304909 -122110333 - L2 LINE L2 -440 2873 2474 738 377 85 26 chr6 60305007 60305633 -122109609 - L2 LINE L2 -2285 1029 367 599 146 0 0 chr6 60305654 60305764 -122109478 + L1PA13 LINE L1 4784 4893 -1253 * 4791 116 21 16 chr6 60305760 60305902 -122109340 + L1PA13 LINE L1 5390 5530 -633 2716 88 3 0 chr6 60305902 60306256 -122108986 + THE1A LTR MaLR 1 355 0 4791 116 21 16 chr6 60306256 60306880 -122108362 + L1PA13 LINE L1 5530 6160 -3 180 368 42 21 chr6 60306949 60307044 -122108198 - L2 LINE L2 -2977 337 241 754 298 36 30 chr6 60307288 60307624 -122107618 + MER93a LTR ERV1 63 400 -2 182 36 0 36 chr6 60308898 60308926 -122106316 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 351 0 0 0 chr6 60309270 60309309 -122105933 + (TG)n Simple_repeat Simple_repeat 2 40 0 200 292 79 22 chr6 60311096 60311185 -122104057 - MIR SINE MIR -26 236 143 404 274 30 10 chr6 60311188 60311289 -122103953 + MLT1E1 LTR MaLR 2 100 -493 2311 112 0 3 chr6 60311289 60311601 -122103641 - AluSx SINE Alu -1 311 1 3351 119 25 33 chr6 60311622 60312235 -122103007 + MER4B LTR ERV1 1 779 0 1016 211 98 4 chr6 60312245 60312501 -122102741 + MLT1E1 LTR MaLR 137 416 -238 499 135 0 106 chr6 60312503 60312607 -122102635 + THE1C LTR MaLR 1 93 -282 683 258 15 2 chr6 60313235 60313410 -122101832 - MER5A DNA MER1_type 0 189 1 2610 145 36 2 chr6 60313569 60314017 -122101225 + L1PB3 LINE L1 5682 6144 -10 445 286 214 10 chr6 60314045 60314234 -122101008 - MIR SINE MIR -26 236 4 1082 203 114 75 chr6 60314234 60314593 -122100649 + MLT1A2 LTR MaLR 1 373 -1 1308 244 146 25 chr6 60315378 60315939 -122099303 - L1ME3 LINE L1 -212 5950 5322 215 269 0 115 chr6 60316054 60316132 -122099110 - MER5A DNA MER1_type -6 183 115 * 230 323 188 0 chr6 60316096 60316192 -122099050 + MER5A DNA MER1_type 50 163 -26 343 253 24 12 chr6 60316453 60316536 -122098706 - L2 LINE L2 -38 3275 3192 266 296 34 45 chr6 60316958 60317225 -122098017 - L1M4 LINE L1 -3705 2441 2178 201 159 45 23 chr6 60317272 60317316 -122097926 + CT-rich Low_complexity Low_complexity 1 45 0 1309 259 97 20 chr6 60317391 60317917 -122097325 + MLT1F1 LTR MaLR 1 564 -3 21 0 0 0 chr6 60318204 60318225 -122097017 + AT_rich Low_complexity Low_complexity 1 21 0 3801 65 29 13 chr6 60318438 60318960 -122096282 - L1PA7 LINE L1 0 6154 5625 3987 132 50 54 chr6 60318987 60319765 -122095477 - LTR1 LTR ERV1 0 785 11 23 0 0 0 chr6 60320039 60320062 -122095180 + AT_rich Low_complexity Low_complexity 1 23 0 251 275 22 43 chr6 60320276 60320414 -122094828 - HAL1 LINE L1 -1450 1057 923 899 204 66 0 chr6 60320640 60320807 -122094435 + MER5A DNA MER1_type 12 189 0 1382 246 52 48 chr6 60321039 60321499 -122093743 + MLT1C LTR MaLR 6 467 0 26 0 0 0 chr6 60321961 60321987 -122093255 + AT_rich Low_complexity Low_complexity 1 26 0 258 169 15 62 chr6 60322297 60322362 -122092880 - L1ME LINE L1 -289 5832 5771 602 95 0 0 chr6 60323223 60323307 -122091935 - AluSp/q SINE Alu -10 303 220 310 323 75 32 chr6 60324064 60324250 -122090992 + L2 LINE L2 1863 2056 -1258 331 358 36 66 chr6 60324378 60324652 -122090590 + L2 LINE L2 2573 2838 -476 247 340 175 10 chr6 60324845 60324942 -122090300 + L2 LINE L2 3122 3234 -38 2154 169 77 2 chr6 60324970 60325414 -122089828 - L1MA3 LINE L1 0 7724 7248 10911 186 44 15 chr6 60325414 60327926 -122087316 - L1MA3 LINE L1 -1186 6379 3795 * 15900 153 22 14 chr6 60327911 60329937 -122085305 - L1MA3 LINE L1 -4643 2922 870 959 25 17 0 chr6 60329937 60330055 -122085187 - L1PA4 LINE L1 -3 6152 6033 15900 153 22 14 chr6 60330055 60330663 -122084579 - L1MA3 LINE L1 -6695 870 268 1991 90 22 71 chr6 60331822 60332145 -122083097 - AluSc SINE Alu -2 307 1 1133 264 78 26 chr6 60332155 60332579 -122082663 - L1MD2 LINE L1 -10 6349 5904 2410 176 26 105 chr6 60332584 60333119 -122082123 - LTR42 LTR ERVL -2 493 1 1043 220 16 4 chr6 60333124 60333374 -122081868 - L1MD2 LINE L1 -460 5899 5647 520 208 48 0 chr6 60333388 60333513 -122081729 + L1MC/D LINE L1 5660 5790 -554 435 356 54 0 chr6 60333556 60333778 -122081464 + L1M3a LINE L1 550 783 -5172 2713 255 71 45 chr6 60333778 60335248 -122079994 + L1MA9 LINE L1 323 1547 -4487 5125 83 4 0 chr6 60335248 60335930 -122079312 + L1PA6 LINE L1 5469 6154 0 2713 255 71 45 chr6 60335930 60337349 -122077893 + L1MA9 LINE L1 1547 2928 -3106 * 7791 193 34 39 chr6 60337339 60337352 -122077890 + L1MA9 LINE L1 3329 3341 -2693 1654 179 3 26 chr6 60337352 60337664 -122077578 + AluJb SINE Alu 1 305 -7 7791 193 34 39 chr6 60337664 60337847 -122077395 + L1MA9 LINE L1 3341 3523 -2511 16963 38 3 0 chr6 60337847 60340663 -122074579 - L1PA4 LINE L1 -3 6152 3318 7791 193 34 39 chr6 60340663 60342415 -122072827 + L1MA9 LINE L1 3523 5269 -765 7805 132 27 92 chr6 60342415 60344025 -122071217 - Tigger1 DNA MER2_type 0 2418 914 6125 17 1 0 chr6 60344042 60344748 -122070494 - L1PA3 LINE L1 0 6155 5449 9035 28 4 1 chr6 60344748 60345892 -122069350 + L1PA3 LINE L1 4298 5444 -711 4924 156 28 14 chr6 60345893 60346753 -122068489 - Tigger1 DNA MER2_type -1545 873 2 2171 219 57 16 chr6 60346754 60347329 -122067913 + L1MA9 LINE L1 5268 5866 -334 1842 175 58 8 chr6 60347332 60347726 -122067516 + L1MA9 LINE L1 5898 6311 -1 870 186 91 74 chr6 60347751 60348090 -122067152 + L1MC3 LINE L1 5812 6156 -1629 416 250 38 44 chr6 60348113 60348273 -122066969 - L1MDa LINE L1 -6354 186 28 27 0 0 0 chr6 60348292 60348319 -122066923 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr6 60349183 60349222 -122066020 + AT_rich Low_complexity Low_complexity 1 39 0 364 374 71 41 chr6 60349247 60349541 -122065701 + HAL1 LINE L1 52 354 -2153 234 276 9 48 chr6 60349624 60349729 -122065513 + HAL1 LINE L1 1682 1782 -725 1914 129 11 4 chr6 60350176 60350479 -122064763 - AluSx SINE Alu 0 305 1 372 289 90 77 chr6 60350530 60351062 -122064180 - L1M4 LINE L1 -1471 4675 4137 784 300 88 26 chr6 60351490 60351867 -122063375 - L2 LINE L2 -3 3310 2911 203 98 235 0 chr6 60351919 60351970 -122063272 - L2 LINE L2 -496 2818 2756 329 325 37 32 chr6 60351971 60352159 -122063083 - MLT1J LTR MaLR 0 511 323 274 74 37 37 chr6 60352337 60352391 -122062851 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 2068 130 13 0 chr6 60352396 60352695 -122062547 - AluSx SINE Alu -1 311 9 283 222 26 26 chr6 60353171 60353324 -122061918 + (TA)n Simple_repeat Simple_repeat 2 154 0 22 56 0 0 chr6 60353583 60353619 -122061623 + AT_rich Low_complexity Low_complexity 1 36 0 3483 216 72 51 chr6 60354074 60355222 -122060020 + L1MC4 LINE L1 6865 8036 -6 24 67 0 0 chr6 60355671 60355716 -122059526 + AT_rich Low_complexity Low_complexity 1 45 0 1960 141 20 0 chr6 60356917 60357221 -122058021 + AluSq SINE Alu 1 310 -3 467 344 85 52 chr6 60357712 60358322 -122056920 + L2 LINE L2 2017 2646 -668 225 129 0 0 chr6 60358325 60358356 -122056886 - LTR33 LTR ERVL -7 514 484 638 303 179 17 chr6 60358385 60358738 -122056504 - LTR33 LTR ERVL -111 410 1 360 0 0 0 chr6 60358925 60358965 -122056277 + (CA)n Simple_repeat Simple_repeat 2 41 0 1243 341 80 3 chr6 60359117 60359756 -122055486 - L2 LINE L2 -184 3129 2447 281 282 0 14 chr6 60359894 60359965 -122055277 + L2 LINE L2 3203 3272 0 186 118 0 0 chr6 60359966 60360000 -122055242 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1871 143 14 7 chr6 60360003 60360289 -122054953 - AluSx SINE Alu -24 288 1 299 294 9 0 chr6 60361036 60361145 -122054097 + (TA)n Simple_repeat Simple_repeat 1 110 0 1597 188 13 16 chr6 60361547 60361855 -122053387 + AluJb SINE Alu 1 307 -5 480 224 95 104 chr6 60361907 60362148 -122053094 + LTR37B LTR ERV1 117 355 -113 341 224 40 13 chr6 60362176 60362252 -122052990 - MER58A DNA MER1_type -29 78 1 280 244 101 0 chr6 60362541 60362660 -122052582 + LTR37A LTR ERV1 296 426 0 809 236 86 119 chr6 60362773 60363251 -122051991 + MLT1C LTR MaLR 6 467 0 5218 148 56 7 chr6 60363477 60364766 -122050476 + L1PA16 LINE L1 4809 6166 0 401 298 149 17 chr6 60364792 60365027 -122050215 - L1ME4a LINE L1 -281 5840 5575 26 64 0 0 chr6 60365137 60365184 -122050058 + AT_rich Low_complexity Low_complexity 1 47 0 1963 195 26 42 chr6 60365220 60365676 -122049566 - MLT1C LTR MaLR 0 467 19 25 31 0 0 chr6 60365841 60365873 -122049369 + AT_rich Low_complexity Low_complexity 1 32 0 7954 50 5 11 chr6 60366063 60366907 -122048335 - L1PA6 LINE L1 -1 6153 5305 2407 77 0 0 chr6 60366907 60367204 -122048038 - AluY SINE Alu -14 297 1 7954 50 5 11 chr6 60367204 60368179 -122047063 - L1PA6 LINE L1 -849 5305 4353 13647 65 8 2 chr6 60368179 60370001 -122045241 + L1PA6 LINE L1 2517 4350 -1796 378 382 7 0 chr6 60370230 60370374 -122044868 + MIR3 SINE MIR 58 202 -6 189 368 88 26 chr6 60370458 60370572 -122044670 + MIR SINE MIR 28 148 -60 1410 219 88 52 chr6 60372268 60372825 -122042417 - MER69 DNA AcHobo -3 2523 1947 1096 273 73 26 chr6 60372824 60373168 -122042074 - MER69 DNA AcHobo -838 388 29 * 242 325 98 0 chr6 60374146 60374269 -122040973 - L2 LINE L2 -219 3053 2919 194 326 239 0 chr6 60375910 60376048 -122039194 + MIR SINE MIR 80 250 -12 505 340 82 0 chr6 60377160 60377404 -122037838 + MLT1L LTR MaLR 352 615 0 275 300 115 0 chr6 60378635 60378765 -122036477 + MIR SINE MIR 117 261 -1 421 388 70 21 chr6 60380147 60380660 -122034582 + HERVL LTR ERVL 3443 3940 -1714 5653 123 8 5 chr6 60381022 60381912 -122033330 - L1PB1 LINE L1 -4 6147 5255 5545 123 12 1 chr6 60381023 60382424 -122032818 - L1PB1 LINE L1 -5 6146 4740 6597 231 30 18 chr6 60382424 60383753 -122031489 - L1 LINE L1 -2402 3744 2382 2057 140 3 0 chr6 60383753 60384060 -122031182 - AluSq SINE Alu -5 308 1 6597 231 30 18 chr6 60384060 60385029 -122030213 - L1 LINE L1 -3764 2382 1426 1129 189 0 5 chr6 60386372 60386573 -122028669 - AluSx SINE Alu -14 298 99 436 246 95 8 chr6 60386575 60386701 -122028541 + L2 LINE L2 2201 2337 -977 688 133 0 0 chr6 60386701 60386806 -122028436 - AluSx SINE Alu -207 105 1 229 255 0 0 chr6 60386846 60386893 -122028349 - MLT1K LTR MaLR -197 391 345 1742 327 96 41 chr6 60386914 60387867 -122027375 + L2 LINE L2 2020 3061 -252 2573 52 0 0 chr6 60387867 60388175 -122027067 - AluY SINE Alu -3 308 1 1742 327 96 41 chr6 60388175 60388430 -122026812 + L2 LINE L2 3061 3300 -13 249 33 0 0 chr6 60388432 60388462 -122026780 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 234 262 8 139 chr6 60388582 60388704 -122026538 - MLT1K LTR MaLR -416 172 67 360 159 29 0 chr6 60389025 60389094 -122026148 - L1PA14 LINE L1 -2420 3726 3656 5453 174 38 11 chr6 60389095 60390327 -122024915 + L1PA14 LINE L1 3729 4927 -1234 189 0 0 0 chr6 60390327 60390348 -122024894 + (CA)n Simple_repeat Simple_repeat 1 21 0 5453 174 38 11 chr6 60390348 60391298 -122023944 + L1PA14 LINE L1 4927 6159 -2 5136 150 20 9 chr6 60391298 60392553 -122022689 + L1PA15 LINE L1 4909 6165 0 17735 100 21 23 chr6 60392714 60393484 -122021758 + L1PA8 LINE L1 2477 3247 -2925 2727 56 0 0 chr6 60393484 60393821 -122021421 + L1PA3 LINE L1 5814 6155 0 17735 100 21 23 chr6 60393821 60396742 -122018500 + L1PA8 LINE L1 3247 6152 -20 1411 193 111 0 chr6 60397099 60397405 -122017837 - MER58B DNA MER1_type -1 340 1 268 200 82 45 chr6 60397836 60397946 -122017296 + L1ME4a LINE L1 5990 6103 -18 23 0 0 0 chr6 60397960 60397983 -122017259 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 60398959 60398980 -122016262 + AT_rich Low_complexity Low_complexity 1 21 0 886 257 90 50 chr6 60399582 60400080 -122015162 + HAL1 LINE L1 647 1164 -1343 23 0 0 0 chr6 60400677 60400700 -122014542 + AT_rich Low_complexity Low_complexity 1 23 0 884 329 50 30 chr6 60400996 60401400 -122013842 + MLT1G1 LTR MaLR 3 414 -181 297 191 157 0 chr6 60401649 60401738 -122013504 + LTR47A LTR ERVL 261 363 -89 295 195 110 59 chr6 60401761 60401879 -122013363 + MLT1G1 LTR MaLR 366 489 -41 6377 125 35 1 chr6 60401879 60403554 -122011688 + L1PA13 LINE L1 4412 6145 -18 281 337 58 37 chr6 60403827 60404017 -122011225 - MIR SINE MIR -46 216 23 3802 33 0 4 chr6 60404221 60404697 -122010545 + L1PA3 LINE L1 5686 6159 0 272 253 13 0 chr6 60404722 60404797 -122010445 + L1ME LINE L1 5624 5699 -422 803 124 93 12 chr6 60404944 60405105 -122010137 + L1MB2 LINE L1 5996 6169 -2 2337 253 70 6 chr6 60405379 60406226 -122009016 - L1MCb LINE L1 -2758 3806 2906 757 203 0 0 chr6 60406233 60406366 -122008876 - FLAM_A SINE Alu -2 140 8 2201 237 114 48 chr6 60406376 60406649 -122008593 - L1MCb LINE L1 -3662 2902 2649 180 111 0 0 chr6 60406649 60406676 -122008566 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2201 237 114 48 chr6 60406676 60407096 -122008146 - L1MCb LINE L1 -3915 2649 2258 231 88 0 0 chr6 60407096 60407130 -122008112 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2201 237 114 48 chr6 60407130 60407756 -122007486 - L1MCb LINE L1 -4306 2258 1496 * 3908 230 61 17 chr6 60407752 60409295 -122005947 - L1MCb LINE L1 -4849 1196 65 5300 132 26 83 chr6 60409501 60410364 -122004878 - L1PB1 LINE L1 0 6151 5424 3902 70 0 0 chr6 60410364 60410875 -122004367 - L1PA7 LINE L1 -2 6152 5642 5300 132 26 83 chr6 60410875 60411726 -122003516 - L1PB1 LINE L1 -727 5424 4526 2154 186 31 20 chr6 60411840 60412601 -122002641 + MER21A LTR ERV1 5 925 -6 1487 251 62 20 chr6 60414089 60414539 -122000703 - MER110 LTR ERV1 -22 469 1 288 335 101 13 chr6 60414565 60414723 -122000519 - MER5B DNA MER1_type 0 178 7 3510 178 42 31 chr6 60414896 60415056 -122000186 - LTR39 LTR ERV1 -2 781 624 2380 49 16 13 chr6 60415056 60415362 -121999880 - AluY SINE Alu -4 307 1 3510 178 42 31 chr6 60415362 60415919 -121999323 - LTR39 LTR ERV1 -159 624 56 192 286 116 54 chr6 60416135 60416359 -121998883 - MER5C DNA MER1_type -16 308 71 27 73 0 0 chr6 60417051 60417106 -121998136 + AT_rich Low_complexity Low_complexity 1 55 0 4478 110 20 1 chr6 60417206 60417854 -121997388 + PABL_A LTR ERV1 1 660 0 2983 242 88 22 chr6 60417973 60418854 -121996388 - L1ME2 LINE L1 -15 6218 5396 2628 23 0 7 chr6 60418854 60419155 -121996087 - AluYa5 SINE Alu -12 299 1 2983 242 88 22 chr6 60419155 60419260 -121995982 - L1ME2 LINE L1 -837 5396 5299 1554 201 16 3 chr6 60419260 60419563 -121995679 - AluJo SINE Alu -5 307 1 2983 242 88 22 chr6 60419563 60419946 -121995296 - L1ME2 LINE L1 -934 5299 4751 696 297 63 56 chr6 60419947 60420943 -121994299 - L1ME2 LINE L1 -5219 1002 51 200 260 39 67 chr6 60422478 60422573 -121992669 - MIR SINE MIR -11 251 158 1603 183 56 14 chr6 60422573 60422933 -121992309 + THE1C LTR MaLR 1 375 0 267 31 0 0 chr6 60424042 60424074 -121991168 + (GA)n Simple_repeat Simple_repeat 1 32 0 330 200 47 12 chr6 60424127 60424212 -121991030 + MLT1K LTR MaLR 487 574 -14 5569 169 24 26 chr6 60427731 60428890 -121986352 + L1MC1 LINE L1 5175 6333 0 296 301 48 39 chr6 60429371 60429577 -121985665 + HERVL LTR ERVL 978 1185 -4579 386 335 109 25 chr6 60429623 60429862 -121985380 + HERVL LTR ERVL 3205 3463 -2191 238 256 15 29 chr6 60429909 60430046 -121985196 + (TAA)n Simple_repeat Simple_repeat 2 136 0 * 253 231 0 43 chr6 60429959 60430076 -121985166 + A-rich Low_complexity Low_complexity 1 112 0 21 0 0 0 chr6 60430927 60430948 -121984294 + AT_rich Low_complexity Low_complexity 1 21 0 225 278 176 32 chr6 60431286 60431473 -121983769 + L1MC/D LINE L1 5510 5723 -2085 25 0 0 0 chr6 60431685 60431710 -121983532 + AT_rich Low_complexity Low_complexity 1 25 0 2157 98 3 16 chr6 60431961 60432276 -121982966 - AluY SINE Alu 0 311 1 361 298 70 70 chr6 60432278 60432395 -121982847 - MIR SINE MIR -46 216 97 2071 84 47 37 chr6 60432395 60432693 -121982549 + AluSg SINE Alu 1 301 -9 361 298 70 70 chr6 60432693 60432790 -121982452 - MIR SINE MIR -164 98 2 1862 145 10 24 chr6 60432948 60433238 -121982004 + AluJo SINE Alu 1 286 -26 457 298 81 43 chr6 60433289 60433524 -121981718 - L3 LINE CR1 -227 1350 1107 1568 250 70 31 chr6 60434460 60434944 -121980298 - MLT1D LTR MaLR 0 505 3 2672 194 26 7 chr6 60435043 60435583 -121979659 - MER44D DNA MER2_type 0 605 1 2126 113 3 0 chr6 60435610 60435893 -121979349 + AluSx SINE Alu 1 284 -28 22 0 0 0 chr6 60435893 60435915 -121979327 + AT_rich Low_complexity Low_complexity 1 22 0 2329 88 0 13 chr6 60436210 60436516 -121978726 + AluSg SINE Alu 1 302 -8 180 219 0 0 chr6 60437164 60437205 -121978037 + (CA)n Simple_repeat Simple_repeat 1 41 0 959 266 56 44 chr6 60438027 60438097 -121977145 + L1ME4a LINE L1 5493 5561 -560 377 101 130 14 chr6 60438097 60438166 -121977076 - MADE1 DNA Mariner -3 77 1 959 266 56 44 chr6 60438166 60438210 -121977032 + L1ME4a LINE L1 5561 5603 -518 1618 173 60 11 chr6 60438210 60438493 -121976749 - AluJo SINE Alu -15 297 1 959 266 56 44 chr6 60438493 60438874 -121976368 + L1ME4a LINE L1 5603 5995 -126 22 0 0 0 chr6 60439719 60439741 -121975501 + AT_rich Low_complexity Low_complexity 1 22 0 754 203 7 20 chr6 60441789 60441937 -121973305 - AluJo/FRAM SINE Alu -12 300 155 359 229 14 0 chr6 60441937 60442007 -121973235 - AluJ/FLAM SINE Alu -231 71 1 5698 137 27 57 chr6 60442010 60443080 -121972162 - L1MC1 LINE L1 0 6333 5296 204 67 0 0 chr6 60443083 60443113 -121972129 + (TC)n Simple_repeat Simple_repeat 1 30 0 826 3 72 28 chr6 60443113 60443424 -121971818 + (TA)n Simple_repeat Simple_repeat 1 324 0 6404 87 10 2 chr6 60443425 60444490 -121970752 - L1PA8A LINE L1 -20 6111 5038 1398 156 8 0 chr6 60444487 60444724 -121970518 + L1PA8A LINE L1 4796 5034 -1112 * 1116 227 45 7 chr6 60444720 60445028 -121970214 - L1M4 LINE L1 -810 5336 5017 * 3701 217 44 5 chr6 60445059 60445939 -121969303 - L1M4 LINE L1 -1281 4865 3951 555 250 154 13 chr6 60446041 60446197 -121969045 + MER5A DNA MER1_type 12 189 0 344 331 88 17 chr6 60446264 60446445 -121968797 + MIR SINE MIR 13 206 -56 1882 131 7 11 chr6 60447287 60447570 -121967672 + AluSx SINE Alu 1 282 -30 297 0 0 0 chr6 60447577 60447610 -121967632 + (CAA)n Simple_repeat Simple_repeat 3 35 0 654 170 0 0 chr6 60447689 60447789 -121967453 + AluJb SINE Alu 16 115 -197 222 37 0 0 chr6 60447791 60447818 -121967424 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 316 174 0 98 chr6 60447932 60448024 -121967218 + MLT1J2 LTR MaLR 362 444 -6 191 322 0 0 chr6 60448322 60448381 -121966861 - L2 LINE L2 -5 3308 3250 1315 233 58 0 chr6 60448404 60448521 -121966721 + AluJo SINE Alu 1 110 -202 210 71 0 0 chr6 60448521 60448549 -121966693 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 1315 233 58 0 chr6 60448549 60448706 -121966536 + AluJo SINE Alu 110 291 -21 371 322 85 14 chr6 60448825 60449036 -121966206 + MIR SINE MIR 37 262 0 495 260 164 0 chr6 60449088 60449234 -121966008 - MER5A DNA MER1_type -9 180 11 741 200 56 20 chr6 60449245 60449440 -121965802 + MER3 DNA MER1_type 1 202 -7 249 316 0 0 chr6 60450018 60450097 -121965145 - MLT1L LTR MaLR -536 79 1 272 212 12 47 chr6 60450191 60450276 -121964966 + HAL1b LINE L1 642 723 -625 21 0 0 0 chr6 60450602 60450623 -121964619 + AT_rich Low_complexity Low_complexity 1 21 0 48 18 0 0 chr6 60450887 60450942 -121964300 + AT_rich Low_complexity Low_complexity 1 55 0 2710 175 32 23 chr6 60451062 60451628 -121963614 - L1M4 LINE L1 -2315 3831 3261 318 267 95 9 chr6 60451924 60452029 -121963213 + MER103 DNA DNA 8 121 -45 23 0 0 0 chr6 60452058 60452081 -121963161 + AT_rich Low_complexity Low_complexity 1 23 0 341 330 84 11 chr6 60452447 60452626 -121962616 + L1ME2 LINE L1 3776 3967 -2179 7890 172 20 30 chr6 60452669 60454818 -121960424 + L1P3 LINE L1 1 2185 -4276 2741 240 50 20 chr6 60454832 60455730 -121959512 + L1ME2 LINE L1 5171 6092 -72 193 220 99 77 chr6 60456460 60456551 -121958691 - L2 LINE L2 -3 3310 3218 223 358 62 0 chr6 60457981 60458093 -121957149 + MIR SINE MIR 20 138 -70 494 306 28 0 chr6 60458636 60458780 -121956462 - LTR16A LTR ERVL -2 448 301 329 295 48 19 chr6 60458954 60459059 -121956183 + MIR SINE MIR 65 172 -90 600 279 37 26 chr6 60459061 60459330 -121955912 - LTR16A LTR ERVL -161 289 18 492 311 56 11 chr6 60459415 60459595 -121955647 - MIR SINE MIR -6 256 69 395 301 51 19 chr6 60460748 60460904 -121954338 + MIR SINE MIR 50 210 -52 4003 192 40 60 chr6 60460940 60461890 -121953352 + MER21A LTR ERV1 1 931 0 331 309 129 8 chr6 60461940 60462196 -121953046 - L1MC/D LINE L1 -2267 5541 5255 1376 229 3 0 chr6 60462418 60462702 -121952540 + L1ME2 LINE L1 5479 5763 -403 233 118 0 0 chr6 60462783 60462817 -121952425 - LTR6A LTR ERV1 -458 106 73 937 181 54 5 chr6 60463727 60463931 -121951311 + L1ME2 LINE L1 5759 5972 -192 15030 135 55 35 chr6 60464250 60466904 -121948338 + Tigger2 DNA MER2_type 1 2708 -10 2720 250 32 45 chr6 60466904 60468010 -121947232 + L1ME1 LINE L1 5027 6115 -51 1932 149 3 0 chr6 60468104 60468392 -121946850 + AluSx SINE Alu 3 291 -21 670 207 107 14 chr6 60468492 60468632 -121946610 - FRAM SINE Alu -10 156 4 1766 157 50 38 chr6 60468703 60469046 -121946196 + MLT2B2 LTR ERVL 17 363 -152 207 0 0 0 chr6 60469074 60469097 -121946145 + (CA)n Simple_repeat Simple_repeat 2 24 0 305 164 0 0 chr6 60469115 60469170 -121946072 + MLT2B2 LTR ERVL 466 520 0 2375 148 54 0 chr6 60469345 60469750 -121945492 + MSTA LTR MaLR 2 428 0 186 100 0 60 chr6 60470370 60470420 -121944822 + (TA)n Simple_repeat Simple_repeat 2 48 0 300 355 43 7 chr6 60470972 60471110 -121944132 - MIR SINE MIR -70 192 50 216 289 66 13 chr6 60471617 60471693 -121943549 + L2 LINE L2 3149 3228 -44 25 63 0 38 chr6 60472754 60472833 -121942409 + AT_rich Low_complexity Low_complexity 1 76 0 2302 197 38 77 chr6 60473162 60473842 -121941400 - MLT1E1 LTR MaLR 0 654 1 308 344 119 32 chr6 60474013 60474324 -121940918 + L1ME4a LINE L1 6 343 -5776 1811 198 34 46 chr6 60474354 60474764 -121940478 - MLT2D LTR ERVL -7 407 3 351 272 150 103 chr6 60474785 60474904 -121940338 + L1ME4a LINE L1 375 487 -5632 2224 114 122 16 chr6 60474904 60475290 -121939952 - MSTA LTR MaLR 0 428 2 351 272 150 103 chr6 60475290 60475530 -121939712 + L1ME4a LINE L1 487 751 -5368 488 309 82 16 chr6 60475556 60476006 -121939236 + L1ME4a LINE L1 4113 4592 -1537 23 33 0 0 chr6 60476166 60476196 -121939046 + AT_rich Low_complexity Low_complexity 1 30 0 573 297 89 7 chr6 60476354 60476801 -121938441 + L1ME4a LINE L1 5139 5632 -515 27 29 0 0 chr6 60476955 60476989 -121938253 + AT_rich Low_complexity Low_complexity 1 34 0 358 229 147 73 chr6 60477909 60478231 -121937011 + L1ME4a LINE L1 5636 5978 -126 206 260 0 41 chr6 60478882 60478955 -121936287 - L2 LINE L2 -75 3238 3169 237 325 12 12 chr6 60479145 60479228 -121936014 + L1MEd LINE L1 480 562 -5557 404 251 159 6 chr6 60480029 60480192 -121935050 - MIR SINE MIR -24 238 51 210 37 0 0 chr6 60480266 60480293 -121934949 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1496 205 14 11 chr6 60480299 60480577 -121934665 - AluJo SINE Alu -28 284 6 42 20 0 0 chr6 60481357 60481406 -121933836 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr6 60481592 60481627 -121933615 + AT_rich Low_complexity Low_complexity 1 35 0 204 217 29 14 chr6 60481934 60482003 -121933239 + (TA)n Simple_repeat Simple_repeat 1 70 0 300 27 0 0 chr6 60482261 60482298 -121932944 + (TTA)n Simple_repeat Simple_repeat 3 39 0 824 50 0 0 chr6 60482298 60482399 -121932843 - L1PA4 LINE L1 -18 6137 6037 1516 142 123 0 chr6 60483001 60483254 -121931988 - AluJb SINE Alu -27 285 2 249 307 20 87 chr6 60483724 60483874 -121931368 + MIR SINE MIR 2 141 -121 2531 47 15 0 chr6 60484075 60484416 -121930826 - L1P LINE L1 -3284 2862 2517 33 66 0 0 chr6 60484595 60484656 -121930586 + AT_rich Low_complexity Low_complexity 1 61 0 343 189 33 25 chr6 60485394 60485516 -121929726 - L1M4 LINE L1 -816 5330 5208 356 273 168 66 chr6 60486104 60486360 -121928882 + MLT1J LTR MaLR 94 375 -136 225 94 0 0 chr6 60486408 60486440 -121928802 + (CA)n Simple_repeat Simple_repeat 2 33 0 1549 196 42 10 chr6 60488289 60488595 -121926647 + MER1B DNA MER1_type 24 339 0 352 176 40 0 chr6 60489422 60489496 -121925746 + MER116 DNA Mariner 2 78 -2 330 299 0 0 chr6 60489511 60489578 -121925664 + MER82 DNA MER2_type 459 525 -128 299 282 24 24 chr6 60489784 60489908 -121925334 - L1M4 LINE L1 -3604 2542 2419 897 222 8 12 chr6 60489967 60490210 -121925032 + L1M4 LINE L1 5089 5330 -816 5744 191 28 28 chr6 60490469 60492423 -121922819 - L1MC1 LINE L1 -1 6332 4370 3194 41 2 0 chr6 60492423 60492816 -121922426 + L1PA4 LINE L1 5757 6150 -5 5744 191 28 28 chr6 60492816 60492969 -121922273 - L1MC1 LINE L1 -1963 4370 4219 2324 96 0 7 chr6 60493043 60493346 -121921896 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr6 60493961 60493982 -121921260 + AT_rich Low_complexity Low_complexity 1 21 0 762 263 168 103 chr6 60495364 60495595 -121919647 + L2 LINE L2 2045 2259 -1054 264 30 0 0 chr6 60495595 60495628 -121919614 + (TG)n Simple_repeat Simple_repeat 2 34 0 762 263 168 103 chr6 60495628 60495845 -121919397 + L2 LINE L2 2259 2460 -853 252 145 0 81 chr6 60495845 60495907 -121919335 - Charlie6 DNA MER1_type -2179 1321 1265 762 263 168 103 chr6 60495907 60496544 -121918698 + L2 LINE L2 2460 3264 -49 603 314 35 43 chr6 60496674 60496932 -121918310 + MIR SINE MIR 7 262 0 1706 175 0 20 chr6 60496994 60497291 -121917951 - AluJo SINE Alu -21 291 1 2464 69 0 3 chr6 60497807 60498113 -121917129 + AluY SINE Alu 1 305 -6 668 148 19 9 chr6 60501143 60501251 -121913991 + FLAM_A SINE Alu 1 109 -33 243 214 143 12 chr6 60501370 60501454 -121913788 + MER103 DNA DNA 2 96 -70 4569 166 36 59 chr6 60501530 60501693 -121913549 - L1MA7 LINE L1 -10 6281 6116 2749 88 5 8 chr6 60501693 60502078 -121913164 + L1PA8 LINE L1 5783 6166 -6 4569 166 36 59 chr6 60502078 60502944 -121912298 - L1MA7 LINE L1 -175 6116 5282 1556 81 23 5 chr6 60502944 60503165 -121912077 + L1PA10 LINE L1 5939 6163 -5 4569 166 36 59 chr6 60503165 60504001 -121911241 - L1MA7 LINE L1 -1009 5282 4428 27 29 0 0 chr6 60505618 60505652 -121909590 + AT_rich Low_complexity Low_complexity 1 34 0 3674 127 82 33 chr6 60507268 60507961 -121907281 + LTR8A LTR ERV1 1 727 0 761 163 12 47 chr6 60508399 60508571 -121906671 + LTR28 LTR ERV1 2 167 -853 * 1717 162 70 12 chr6 60508556 60508883 -121906359 + LTR27 LTR ERV1 291 636 0 1185 98 0 0 chr6 60509996 60510159 -121905083 - AluY SINE Alu 0 311 149 2057 114 31 0 chr6 60510244 60510534 -121904708 + AluSx SINE Alu 14 312 0 2082 126 0 35 chr6 60510539 60510672 -121904570 + AluSg SINE Alu 1 137 -173 2417 59 0 16 chr6 60510672 60510975 -121904267 + AluY SINE Alu 1 298 -13 2082 126 0 35 chr6 60510975 60511158 -121904084 + AluSg SINE Alu 137 306 -4 534 57 0 0 chr6 60511200 60511270 -121903972 + (TG)n Simple_repeat Simple_repeat 2 71 0 2121 147 0 0 chr6 60512391 60512703 -121902539 + AluSx SINE Alu 1 312 0 351 295 139 20 chr6 60512816 60513060 -121902182 - L3 LINE CR1 -176 1401 1129 14734 31 1 1 chr6 60513080 60514875 -121900367 + L1P LINE L1 2530 4325 -1821 1090 189 87 25 chr6 60515052 60515394 -121899848 + MSTD LTR MaLR 3 396 0 2131 113 3 3 chr6 60515574 60515867 -121899375 + AluSg1 SINE Alu 1 293 -16 246 62 0 0 chr6 60515867 60515899 -121899343 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 22 35 0 0 chr6 60515942 60515971 -121899271 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 60516124 60516153 -121899089 + AT_rich Low_complexity Low_complexity 1 29 0 529 266 116 9 chr6 60516268 60516501 -121898741 - MER20B DNA MER1_type 0 783 526 269 304 81 62 chr6 60516637 60516798 -121898444 - MER20B DNA MER1_type -542 241 78 188 295 121 24 chr6 60517596 60517762 -121897480 - MIR SINE MIR -59 203 22 2259 108 7 3 chr6 60518388 60518695 -121896547 - AluSx SINE Alu -1 311 4 369 306 132 23 chr6 60519613 60519832 -121895410 + MIR SINE MIR 20 262 0 1063 169 76 5 chr6 60521292 60521551 -121893691 + L1MA8 LINE L1 5755 6038 -120 205 50 25 25 chr6 60521561 60521601 -121893641 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1520 184 11 0 chr6 60522861 60523122 -121892120 + Tigger7 DNA MER2_type 1 264 -469 542 216 0 0 chr6 60523124 60523221 -121892021 + Tigger7 DNA MER2_type 2395 2491 0 379 224 154 42 chr6 60523226 60523369 -121891873 + MIR SINE MIR 104 262 0 341 290 11 0 chr6 60523597 60523690 -121891552 + MIR3 SINE MIR 98 191 -17 864 238 84 0 chr6 60524420 60524622 -121890620 + MER58A DNA MER1_type 2 220 -4 26 30 0 0 chr6 60524728 60524761 -121890481 + AT_rich Low_complexity Low_complexity 1 33 0 2172 108 3 19 chr6 60525311 60525618 -121889624 - AluSg SINE Alu -8 302 1 267 245 0 0 chr6 60526581 60526630 -121888612 + L2 LINE L2 3247 3295 -18 2535 144 41 5 chr6 60527411 60527828 -121887414 + MSTB1 LTR MaLR 1 432 0 220 200 0 0 chr6 60528134 60528174 -121887068 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 616 250 0 0 chr6 60528333 60528465 -121886777 + FLAM_A SINE Alu 1 132 -1 2958 136 58 21 chr6 60529538 60530100 -121885142 + LTR24B LTR ERV1 1 635 0 2992 197 75 9 chr6 60530443 60531107 -121884135 + MER67C LTR ERV1 1 708 -2 211 348 18 18 chr6 60531429 60531541 -121883701 + L2 LINE L2 2943 3054 -218 1694 194 0 7 chr6 60531842 60532152 -121883090 - AluJo SINE Alu -4 308 1 1078 160 123 47 chr6 60532186 60532486 -121882756 + MER33 DNA MER1_type 1 323 -1 2845 10 0 0 chr6 60532510 60532821 -121882421 + AluYa5 SINE Alu 1 311 0 277 262 50 78 chr6 60533202 60533343 -121881899 - L2 LINE L2 -24 3289 3153 266 252 57 89 chr6 60533624 60533747 -121881495 - MLT1J LTR MaLR -289 222 104 569 189 11 0 chr6 60533747 60533842 -121881400 + MER2 DNA MER2_type 2 97 -248 221 70 70 0 chr6 60533849 60533906 -121881336 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 50 31 0 0 chr6 60533906 60533970 -121881272 + AT_rich Low_complexity Low_complexity 1 64 0 572 164 26 9 chr6 60533970 60534086 -121881156 + MER2 DNA MER2_type 66 183 -162 233 318 16 0 chr6 60534160 60534223 -121881019 + MER2 DNA MER2_type 282 345 0 224 308 81 81 chr6 60534319 60534446 -121880796 - L2 LINE L2 -176 3137 3008 1941 121 0 60 chr6 60534446 60534760 -121880482 + AluSq SINE Alu 1 295 -18 224 308 81 81 chr6 60534760 60534804 -121880438 - L2 LINE L2 -304 3009 2966 1416 173 124 50 chr6 60535018 60535341 -121879901 - MLT2C1 LTR ERVL -47 350 4 239 147 0 2 chr6 60535603 60535821 -121879421 + AluSq SINE Alu 1 250 -52 573 266 40 6 chr6 60535885 60536058 -121879184 - MER93b LTR ERV1 -4 369 191 189 0 0 0 chr6 60536123 60536144 -121879098 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 32 26 0 0 chr6 60537306 60537345 -121877897 + AT_rich Low_complexity Low_complexity 1 39 0 1259 130 0 0 chr6 60537529 60537706 -121877536 + AluSg/x SINE Alu 92 268 -42 315 308 25 61 chr6 60537850 60538048 -121877194 + MLT1J LTR MaLR 110 300 -211 412 341 106 24 chr6 60538306 60538684 -121876558 - L2 LINE L2 -1222 2092 1684 21 0 0 0 chr6 60540865 60540886 -121874356 + AT_rich Low_complexity Low_complexity 1 21 0 1074 203 32 8 chr6 60541322 60541410 -121873832 + L1MD3 LINE L1 7730 7814 -181 1710 95 0 0 chr6 60541410 60541632 -121873610 - AluSg/x SINE Alu -11 299 78 1074 203 32 8 chr6 60541632 60541789 -121873453 + L1MD3 LINE L1 7814 7981 -14 214 204 0 20 chr6 60542161 60542210 -121873032 + GA-rich Low_complexity Low_complexity 1 48 0 547 248 54 108 chr6 60542412 60542707 -121872535 + MER102b DNA MER1_type 30 308 -33 1770 177 0 3 chr6 60542908 60543219 -121872023 - AluJb SINE Alu 0 312 3 313 259 134 27 chr6 60543347 60543459 -121871783 + MIR SINE MIR 118 241 -21 1108 162 24 19 chr6 60543982 60544192 -121871050 + AluJb SINE Alu 95 305 -7 272 331 52 22 chr6 60544324 60544402 -121870840 - L2 LINE L2 -6 3307 3222 1962 91 0 0 chr6 60544402 60544654 -121870588 + AluY SINE Alu 55 306 -5 272 331 52 22 chr6 60544654 60544711 -121870531 - L2 LINE L2 -91 3222 3168 333 261 65 59 chr6 60544833 60544986 -121870256 - L1ME4a LINE L1 -3 6118 5965 281 214 0 0 chr6 60545126 60545182 -121870060 + L1MC4 LINE L1 7475 7530 -512 681 228 104 15 chr6 60545280 60545482 -121869760 + L1MD3 LINE L1 7765 7984 -11 266 303 62 0 chr6 60545529 60545674 -121869568 - L1ME4a LINE L1 -292 5829 5676 252 213 13 55 chr6 60547057 60547168 -121868074 + MER90 LTR ERV1 379 569 -6 198 320 95 54 chr6 60547557 60547704 -121867538 + MIR3 SINE MIR 16 168 -40 265 303 189 8 chr6 60547913 60548035 -121867207 + MER5A DNA MER1_type 46 189 0 214 219 0 0 chr6 60548697 60548738 -121866504 + MIR3 SINE MIR 114 154 -54 238 343 112 21 chr6 60548738 60548790 -121866452 + MER5B DNA MER1_type 4 50 -128 2234 109 0 19 chr6 60548790 60549103 -121866139 - AluSx SINE Alu -5 307 1 238 343 112 21 chr6 60549103 60549193 -121866049 + MER5B DNA MER1_type 50 159 -19 279 306 10 10 chr6 60549222 60549320 -121865922 + MER5A DNA MER1_type 9 106 -83 233 191 0 21 chr6 60549457 60549504 -121865738 + L2 LINE L2 3268 3313 0 223 298 117 58 chr6 60549764 60549952 -121865290 + L2 LINE L2 1913 2111 -1203 637 169 7 7 chr6 60550048 60550190 -121865052 + G-rich Low_complexity Low_complexity 4 145 0 219 282 39 78 chr6 60550514 60550617 -121864625 - MER5A DNA MER1_type -56 133 35 617 233 8 0 chr6 60551791 60551911 -121863331 + MER5A DNA MER1_type 1 121 -68 835 222 11 27 chr6 60551974 60552159 -121863083 + MER5A DNA MER1_type 5 186 -3 2398 103 0 0 chr6 60552202 60552514 -121862728 - AluSx SINE Alu 0 312 1 329 283 148 42 chr6 60553786 60554023 -121861219 - MIR SINE MIR 0 262 1 718 152 109 36 chr6 60554230 60554395 -121860847 - MER3 DNA MER1_type -4 205 29 21 0 0 0 chr6 60555022 60555043 -121860199 + AT_rich Low_complexity Low_complexity 1 21 0 2539 53 0 0 chr6 60555228 60555531 -121859711 - AluY SINE Alu -8 303 1 192 77 0 0 chr6 60555885 60555911 -121859331 + (T)n Simple_repeat Simple_repeat 1 26 0 28 61 0 0 chr6 60556262 60556311 -121858931 + AT_rich Low_complexity Low_complexity 1 49 0 2045 126 3 10 chr6 60556444 60556746 -121858496 + AluSx SINE Alu 1 300 -12 363 130 0 0 chr6 60557083 60557137 -121858105 - AluSc SINE Alu -10 289 236 612 76 0 0 chr6 60557242 60557321 -121857921 - AluS SINE Alu -234 79 1 2138 110 0 0 chr6 60557436 60557756 -121857486 + AluSx SINE Alu 1 320 0 198 128 0 0 chr6 60558234 60558273 -121856969 + (T)n Simple_repeat Simple_repeat 1 39 0 587 38 0 25 chr6 60558370 60558450 -121856792 - MER11A LTR ERVK 0 1266 1189 * 711 121 0 0 chr6 60558439 60558538 -121856704 - MER11B LTR ERVK -1137 99 1 430 277 119 11 chr6 60560328 60560505 -121854737 - MIR SINE MIR 0 262 67 358 263 134 27 chr6 60560700 60560924 -121854318 + MER112 DNA MER1_type 2 249 -11 309 325 89 8 chr6 60561532 60561655 -121853587 - MER5A DNA MER1_type -1 188 56 250 341 45 0 chr6 60562335 60562423 -121852819 + MIR SINE MIR 12 103 -159 296 322 107 0 chr6 60562487 60562608 -121852634 - MIR SINE MIR -55 207 74 180 77 0 0 chr6 60563058 60563084 -121852158 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2326 109 0 3 chr6 60563494 60563805 -121851437 + AluSg SINE Alu 1 310 0 48 18 0 0 chr6 60565194 60565249 -121849993 + AT_rich Low_complexity Low_complexity 1 55 0 225 309 74 40 chr6 60565340 60565489 -121849753 + MIR SINE MIR 63 216 -46 228 324 176 25 chr6 60566132 60566336 -121848906 + MIR SINE MIR 22 256 -6 503 266 19 32 chr6 60566837 60566995 -121848247 + MIR SINE MIR 63 218 -44 209 287 50 59 chr6 60568261 60568362 -121846880 - L2 LINE L2 -505 2809 2710 7249 43 0 4 chr6 60568808 60570132 -121845110 + L1PA5 LINE L1 4832 6151 -3 637 318 106 45 chr6 60570894 60571318 -121843924 - L2 LINE L2 -4 3309 2860 244 370 87 0 chr6 60571397 60571605 -121843637 - L2 LINE L2 -1186 2128 1903 1072 201 21 58 chr6 60571621 60571950 -121843292 + L1M4 LINE L1 4869 5185 -961 298 122 0 0 chr6 60571950 60571991 -121843251 + Alu SINE Alu 1 41 -267 766 241 5 9 chr6 60571993 60572213 -121843029 + L1M4 LINE L1 4967 5185 -961 1885 146 3 31 chr6 60572213 60572534 -121842708 + AluSx SINE Alu 1 312 0 1448 147 25 104 chr6 60572546 60572873 -121842369 + AluYb8 SINE Alu 1 301 -17 778 275 9 48 chr6 60572876 60573339 -121841903 - L1 LINE L1 -1534 4612 4186 3292 249 177 21 chr6 60573390 60574526 -121840716 - L1MDb LINE L1 -5081 1328 16 222 243 29 29 chr6 60574848 60574918 -121840324 - MIR SINE MIR -15 247 178 24 32 0 0 chr6 60574934 60574965 -121840277 + AT_rich Low_complexity Low_complexity 1 31 0 4996 170 30 32 chr6 60575014 60575284 -121839958 - L1MA7 LINE L1 -4 6287 6018 2215 105 0 16 chr6 60575284 60575597 -121839645 - AluY SINE Alu -3 308 1 4996 170 30 32 chr6 60575597 60576585 -121838657 - L1MA7 LINE L1 -273 6018 5030 351 250 10 0 chr6 60576694 60576790 -121838452 + L1MC/D LINE L1 5089 5185 -961 1885 146 3 31 chr6 60576790 60577111 -121838131 + AluSx SINE Alu 1 312 0 2001 119 7 0 chr6 60577123 60577400 -121837842 + AluSx SINE Alu 1 279 -33 309 256 112 40 chr6 60577432 60577557 -121837685 + L1MC/D LINE L1 5176 5309 -837 1085 179 84 68 chr6 60577588 60577839 -121837403 - AluJb SINE Alu -57 255 1 574 216 54 48 chr6 60577839 60578006 -121837236 + L1MC/D LINE L1 5305 5472 -770 1404 151 97 37 chr6 60578574 60578918 -121836324 - MSTA LTR MaLR 0 428 19 6912 234 13 24 chr6 60579180 60579510 -121835732 - L1PA15-16 LINE L1 -2865 4719 4387 2258 118 0 10 chr6 60579510 60579816 -121835426 - AluSx SINE Alu -9 303 1 6912 234 13 24 chr6 60579816 60581783 -121833459 - L1PA15-16 LINE L1 -3197 4387 2453 737 157 61 0 chr6 60581798 60581945 -121833297 - AluSc SINE Alu 0 309 154 488 316 54 17 chr6 60582669 60582966 -121832276 - L1PA15-16 LINE L1 -7266 315 8 587 277 92 46 chr6 60583120 60583770 -121831472 - L1ME LINE L1 -589 5573 4900 446 251 168 69 chr6 60583876 60583894 -121831348 - L1ME LINE L1 -1326 4820 4805 2149 117 3 0 chr6 60583894 60584194 -121831048 - AluSg SINE Alu -9 301 1 446 251 168 69 chr6 60584194 60584598 -121830644 - L1ME LINE L1 -1341 4805 4356 5439 220 58 38 chr6 60584712 60585295 -121829947 - L1MD1 LINE L1 -312 5930 5360 2589 118 0 3 chr6 60585295 60585660 -121829582 + THE1B LTR MaLR 1 364 0 5439 220 58 38 chr6 60585660 60587446 -121827796 - L1MD1 LINE L1 -882 5360 3522 533 221 50 65 chr6 60587472 60587671 -121827571 + L1M4 LINE L1 3299 3494 -2652 9486 224 48 25 chr6 60587693 60590343 -121824899 - L1 LINE L1 -1989 5576 2970 275 65 22 0 chr6 60590343 60590389 -121824853 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 9486 224 48 25 chr6 60590389 60591284 -121823958 - L1 LINE L1 -4595 2970 2097 551 280 29 29 chr6 60591615 60591822 -121823420 - L1 LINE L1 -6949 617 411 1493 193 61 7 chr6 60591832 60592128 -121823114 - AluSx SINE Alu 0 312 1 2140 107 7 0 chr6 60592151 60592440 -121822802 + AluSg SINE Alu 1 291 -19 25 0 0 0 chr6 60592965 60592990 -121822252 + AT_rich Low_complexity Low_complexity 1 25 0 1042 254 67 53 chr6 60593468 60594433 -121820809 - L1ME3A LINE L1 -17 6153 5129 387 327 63 13 chr6 60594760 60594919 -121820323 + MIR SINE MIR 22 188 -74 198 254 135 56 chr6 60595012 60595138 -121820104 - MIR SINE MIR 0 262 127 1190 249 52 30 chr6 60595578 60595940 -121819302 - MLT1A2 LTR MaLR 0 374 5 191 315 213 23 chr6 60596304 60596520 -121818722 - MIR SINE MIR -4 258 2 22 56 0 0 chr6 60597011 60597047 -121818195 + AT_rich Low_complexity Low_complexity 1 36 0 502 276 8 0 chr6 60597626 60597749 -121817493 + FLAM_A SINE Alu 1 124 -9 239 163 92 0 chr6 60599182 60599280 -121815962 + (TA)n Simple_repeat Simple_repeat 2 108 0 857 195 13 0 chr6 60599280 60599439 -121815803 - Tigger2 DNA MER2_type -10 2708 2548 * 963 166 50 10 chr6 60599406 60599605 -121815637 - Tigger2 DNA MER2_type -2505 213 7 299 241 179 9 chr6 60600366 60600478 -121814764 + MIR SINE MIR 118 248 -14 23 33 0 0 chr6 60601427 60601457 -121813785 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 60601786 60601808 -121813434 + AT_rich Low_complexity Low_complexity 1 22 0 5272 105 32 8 chr6 60601808 60602598 -121812644 - L1PA13 LINE L1 0 6163 5355 * 7780 198 26 24 chr6 60602586 60604188 -121811054 - L1M1 LINE L1 -5939 1626 22 873 218 38 17 chr6 60605626 60605865 -121809377 + MER96B DNA MER1_type? 2 245 -172 1951 144 0 16 chr6 60606006 60606311 -121808931 - AluSx SINE Alu -12 300 1 398 245 46 26 chr6 60606772 60606920 -121808322 + MLT1J2 LTR MaLR 1 150 -261 1515 146 40 29 chr6 60608233 60608508 -121806734 - AluJb SINE Alu -9 303 26 324 361 107 35 chr6 60608550 60608896 -121806346 - L2 LINE L2 -564 2750 2380 190 164 16 16 chr6 60610379 60610440 -121804802 + CT-rich Low_complexity Low_complexity 6 66 0 220 254 17 0 chr6 60611298 60611357 -121803885 + L2 LINE L2 1939 1998 -1316 23 54 0 0 chr6 60611705 60611742 -121803500 + AT_rich Low_complexity Low_complexity 1 37 0 623 338 106 27 chr6 60611743 60612164 -121803078 + L2 LINE L2 2392 2863 -451 2084 132 0 0 chr6 60612164 60612467 -121802775 - AluSg SINE Alu -7 303 1 623 338 106 27 chr6 60612467 60612563 -121802679 + L2 LINE L2 2863 2950 -364 330 190 17 0 chr6 60612717 60612775 -121802467 + Tigger5 DNA MER2_type 2265 2323 0 231 300 0 0 chr6 60613246 60613316 -121801926 + MIR SINE MIR 188 257 -5 422 210 140 49 chr6 60614771 60614866 -121800376 - MIR SINE MIR -42 220 106 2186 116 3 0 chr6 60614866 60615177 -121800065 + AluSx SINE Alu 1 312 0 422 210 140 49 chr6 60615177 60615224 -121800018 - MIR SINE MIR -156 106 65 429 103 0 0 chr6 60616204 60616262 -121798980 - THE1A LTR MaLR -295 60 3 11478 98 3 1 chr6 60616264 60617841 -121797401 - THE1A-int LTR MaLR 0 1580 1 2495 111 6 0 chr6 60617841 60618194 -121797048 - THE1A LTR MaLR 0 355 1 1310 91 6 17 chr6 60618194 60618395 -121796847 + THE1B LTR MaLR 172 364 0 2682 130 7 19 chr6 60618650 60619081 -121796161 - MSTA LTR MaLR 0 428 3 1644 172 40 20 chr6 60619252 60619555 -121795687 - AluSq SINE Alu -4 309 1 989 186 42 25 chr6 60619586 60619822 -121795420 - AluSq SINE Alu -30 283 44 189 0 0 0 chr6 60619924 60619945 -121795297 + (G)n Simple_repeat Simple_repeat 1 21 0 23 33 0 0 chr6 60620842 60620872 -121794370 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 60621455 60621483 -121793759 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 60621649 60621676 -121793566 + AT_rich Low_complexity Low_complexity 1 27 0 1768 114 0 50 chr6 60622520 60622801 -121792441 - AluSx SINE Alu -9 303 37 374 304 18 27 chr6 60622817 60622929 -121792313 - L2 LINE L2 0 3272 3162 182 219 188 0 chr6 60623003 60623067 -121792175 + MIR3 SINE MIR 133 208 0 385 214 0 80 chr6 60624938 60625050 -121790192 - MER5A DNA MER1_type -83 106 4 330 87 0 0 chr6 60625098 60625144 -121790098 + (CA)n Simple_repeat Simple_repeat 2 47 0 5125 155 20 18 chr6 60625621 60625927 -121789315 - MER4D LTR ERV1 0 903 599 2032 110 13 29 chr6 60625927 60626235 -121789007 + AluSq SINE Alu 1 303 -10 5125 155 20 18 chr6 60626235 60626829 -121788413 - MER4D LTR ERV1 -304 599 1 2835 157 56 18 chr6 60627333 60627578 -121787664 + LTR45 LTR ERV1 1 235 -290 1878 144 160 5 chr6 60627578 60627947 -121787295 - MSTA LTR MaLR 0 428 3 2835 157 56 18 chr6 60627947 60628205 -121787037 + LTR45 LTR ERV1 235 523 -2 1564 192 29 0 chr6 60628702 60629009 -121786233 + AluSx SINE Alu 1 315 0 2194 129 3 0 chr6 60629954 60630264 -121784978 + AluSp SINE Alu 1 311 -2 245 359 11 0 chr6 60630316 60630408 -121784834 + MIR SINE MIR 49 141 -121 5059 173 29 25 chr6 60630430 60631802 -121783440 + L1MA7 LINE L1 4635 6020 -271 2183 105 0 16 chr6 60631802 60632115 -121783127 + AluY SINE Alu 1 308 -3 5059 173 29 25 chr6 60632115 60632385 -121782857 + L1MA7 LINE L1 6020 6287 -4 24 32 0 0 chr6 60632434 60632465 -121782777 + AT_rich Low_complexity Low_complexity 1 31 0 225 243 29 29 chr6 60632481 60632551 -121782691 + MIR SINE MIR 178 247 -15 3316 249 177 21 chr6 60632873 60634009 -121781233 + L1MD2 LINE L1 16 1328 -5081 3599 248 26 22 chr6 60634050 60634496 -121780746 + L1MD2 LINE L1 4439 4882 -1561 2235 110 0 0 chr6 60634496 60634788 -121780454 - AluSg SINE Alu -17 293 2 3599 248 26 22 chr6 60634788 60635603 -121779639 + L1MD2 LINE L1 4882 5700 -743 554 181 38 29 chr6 60635603 60635708 -121779534 + U6 snRNA snRNA 1 106 -1 246 245 0 0 chr6 60635725 60635774 -121779468 - MIR SINE MIR -68 140 92 236 207 0 0 chr6 60635826 60635884 -121779358 + L1MD2 LINE L1 5682 5739 -763 2112 112 10 0 chr6 60635930 60636225 -121779017 - AluSx SINE Alu -14 298 1 1541 227 40 42 chr6 60636225 60636674 -121778568 + L1MD2 LINE L1 6171 6618 -1 1584 130 96 7 chr6 60636685 60636977 -121778265 + L1MA8 LINE L1 5793 6110 -181 9669 47 0 0 chr6 60637720 60639690 -121775552 + L1PA5 LINE L1 4175 6148 -6 194 189 0 0 chr6 60639805 60639842 -121775400 + L2 LINE L2 3273 3309 -4 2608 180 19 31 chr6 60640705 60641146 -121774096 - L1MC2 LINE L1 -17 6327 5893 2258 114 0 3 chr6 60641146 60641454 -121773788 - AluSq SINE Alu -5 308 2 2608 180 19 31 chr6 60641454 60641585 -121773657 - L1MC2 LINE L1 -451 5893 5762 1940 247 35 2 chr6 60641589 60642124 -121773118 - L1MC2 LINE L1 -963 5183 4631 2280 105 3 0 chr6 60642538 60642844 -121772398 - AluSg SINE Alu -3 307 1 22 56 0 0 chr6 60642855 60642891 -121772351 + AT_rich Low_complexity Low_complexity 1 36 0 222 355 0 51 chr6 60643429 60643567 -121771675 - MIR SINE MIR -52 210 80 1788 137 40 0 chr6 60643658 60643936 -121771306 + AluSq SINE Alu 1 289 -24 1988 116 36 20 chr6 60643961 60644263 -121770979 + AluSx SINE Alu 1 307 -5 2682 130 7 19 chr6 60644434 60644865 -121770377 + MSTA LTR MaLR 3 428 0 26 30 0 0 chr6 60645415 60645448 -121769794 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr6 60646028 60646064 -121769178 + AT_rich Low_complexity Low_complexity 1 36 0 207 269 129 54 chr6 60646068 60646161 -121769081 - L2 LINE L2 -37 3235 3136 2095 110 0 14 chr6 60698557 60698714 -121716528 - AluSg SINE Alu -22 288 135 2723 23 0 0 chr6 60698714 60699021 -121716221 - AluYa5 SINE Alu -4 307 1 2095 110 0 14 chr6 60699021 60699155 -121716087 - AluSg SINE Alu -175 135 1 3658 154 53 0 chr6 60699242 60699898 -121715344 + Tigger1 DNA MER2_type 2 692 -1726 404 236 0 0 chr6 60699901 60699973 -121715269 - MER30 DNA MER1_type 0 230 159 2130 115 11 0 chr6 60700198 60700484 -121714758 - AluSc SINE Alu -8 301 13 1197 192 27 14 chr6 60700867 60701086 -121714156 + AluSg/x SINE Alu 87 308 -4 29 60 0 0 chr6 60702691 60702741 -121712501 + AT_rich Low_complexity Low_complexity 1 50 0 383 200 74 0 chr6 60703469 60703564 -121711678 + MER97b DNA MER1_type? 77 178 -875 3494 56 2 0 chr6 60704106 60704552 -121710690 - L1PA5 LINE L1 -1 6153 5707 580 266 109 60 chr6 60704630 60704878 -121710364 - MIR SINE MIR 0 262 3 204 352 102 34 chr6 60705021 60705257 -121709985 + L2 LINE L2 2828 3079 -193 4496 136 5 5 chr6 60705369 60706118 -121709124 + L1P LINE L1 3544 4292 -1854 21 36 0 0 chr6 60706191 60706219 -121709023 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 60706281 60706310 -121708932 + AT_rich Low_complexity Low_complexity 1 29 0 493 328 48 5 chr6 60706352 60706541 -121708701 + L2 LINE L2 3116 3312 -1 260 312 32 11 chr6 60707012 60707105 -121708137 - MIR SINE MIR -151 111 17 799 339 155 33 chr6 60707766 60708538 -121706704 - L2 LINE L2 -240 3073 2190 218 250 36 0 chr6 60709732 60709788 -121705454 + MER5A DNA MER1_type 132 189 0 180 77 0 0 chr6 60710364 60710390 -121704852 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 223 329 91 35 chr6 60712254 60712397 -121702845 - L2 LINE L2 -5 3308 3158 184 290 0 75 chr6 60712536 60712629 -121702613 + MIR3 SINE MIR 111 196 -12 805 133 0 0 chr6 60713002 60713115 -121702127 + AluSg1 SINE Alu 1 113 -196 22 56 0 0 chr6 60713348 60713384 -121701858 + AT_rich Low_complexity Low_complexity 1 36 0 603 302 60 9 chr6 60713641 60713856 -121701386 + L3 LINE CR1 1203 1428 -149 229 266 71 80 chr6 60713928 60714041 -121701201 - MER5B DNA MER1_type 0 178 78 21 36 0 0 chr6 60714938 60714966 -121700276 + AT_rich Low_complexity Low_complexity 1 28 0 415 287 56 10 chr6 60714984 60715179 -121700063 + MLT1J LTR MaLR 6 209 -302 297 206 160 15 chr6 60715221 60715352 -121699890 + MLT1J LTR MaLR 343 492 -19 299 159 53 93 chr6 60715536 60715633 -121699609 - MLT1H LTR MaLR 0 542 452 294 304 41 23 chr6 60715802 60715973 -121699269 - MLT1H LTR MaLR -375 174 1 2120 121 0 40 chr6 60716329 60716652 -121698590 + AluSx SINE Alu 3 312 0 590 37 0 12 chr6 60718158 60718240 -121697002 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 4485 173 32 47 chr6 60718663 60718999 -121696243 - L1MB1 LINE L1 0 6168 5828 2075 127 30 0 chr6 60718999 60719299 -121695943 - AluSx SINE Alu -2 310 2 4485 173 32 47 chr6 60719299 60721023 -121694219 - L1MB1 LINE L1 -340 5828 4143 1539 156 15 110 chr6 60721023 60721485 -121693757 + L1MB1 LINE L1 3749 4166 -1980 937 120 80 6 chr6 60721752 60721927 -121693315 - MSTA LTR MaLR -240 188 1 202 404 58 0 chr6 60722096 60722200 -121693042 - L2 LINE L2 -52 3220 3111 257 270 79 0 chr6 60723033 60723122 -121692120 + MIR SINE MIR 141 236 -26 2115 125 0 0 chr6 60725012 60725413 -121689829 - AluY SINE Alu 0 311 1 261 0 0 0 chr6 60725914 60725943 -121689299 + (TA)n Simple_repeat Simple_repeat 1 29 0 1038 149 11 6 chr6 60725943 60726117 -121689125 - AluSg/x SINE Alu -1 309 135 862 144 4 144 chr6 60726496 60726760 -121688482 + L1MA6 LINE L1 5901 6127 -173 2369 105 0 0 chr6 60726782 60727086 -121688156 - AluSg SINE Alu -6 304 1 302 265 48 101 chr6 60727093 60727282 -121687960 + L1ME3 LINE L1 5901 6079 -83 2404 60 0 10 chr6 60727769 60728067 -121687175 - AluY SINE Alu -16 295 1 210 37 0 0 chr6 60728371 60728398 -121686844 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 324 0 0 0 chr6 60728848 60728884 -121686358 + (TTA)n Simple_repeat Simple_repeat 2 37 0 184 0 0 88 chr6 60728923 60728957 -121686285 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 181 329 50 81 chr6 60729918 60730079 -121685163 - MIR SINE MIR -85 177 22 2521 59 0 7 chr6 60730190 60730493 -121684749 - AluY SINE Alu -10 301 1 406 287 57 38 chr6 60730655 60730864 -121684378 + L1ME4a LINE L1 5682 5894 -227 302 340 0 19 chr6 60730933 60731092 -121684150 - L2 LINE L2 -341 2972 2817 7605 13 0 0 chr6 60731313 60732461 -121682781 - L1HS LINE L1 0 6155 5008 3026 19 0 0 chr6 60732456 60732821 -121682421 + L1HS LINE L1 4641 5005 -1141 * 497 235 91 37 chr6 60732907 60733150 -121682092 - MER20B DNA MER1_type -3 780 525 624 266 99 16 chr6 60733276 60733528 -121681714 - MER20B DNA MER1_type -440 343 71 24 32 0 0 chr6 60734342 60734373 -121680869 + AT_rich Low_complexity Low_complexity 1 31 0 193 313 0 0 chr6 60735044 60735092 -121680150 + L2 LINE L2 3208 3255 -17 1669 125 79 59 chr6 60735305 60735609 -121679633 - AluSg SINE Alu 0 310 1 2272 114 7 0 chr6 60736058 60736364 -121678878 + AluSg SINE Alu 1 308 -2 216 97 0 0 chr6 60736734 60736765 -121678477 + (TA)n Simple_repeat Simple_repeat 1 31 0 270 56 0 0 chr6 60736765 60736801 -121678441 + (GA)n Simple_repeat Simple_repeat 1 36 0 196 380 0 0 chr6 60737552 60737631 -121677611 - MIR SINE MIR -80 128 50 2030 203 30 49 chr6 60738087 60738594 -121676648 - MLT1D LTR MaLR -8 497 1 25 51 0 0 chr6 60738747 60738786 -121676456 + AT_rich Low_complexity Low_complexity 1 39 0 222 37 0 0 chr6 60738786 60738813 -121676429 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1622 174 0 17 chr6 60738815 60739102 -121676140 - AluJo SINE Alu -30 282 1 2019 141 0 10 chr6 60739233 60739530 -121675712 - AluSx SINE Alu -18 294 1 644 275 35 10 chr6 60739863 60740063 -121675179 - MIR SINE MIR 0 262 58 184 300 42 50 chr6 60740321 60740441 -121674801 + L2 LINE L2 2635 2753 -561 1451 293 60 2 chr6 60740553 60740987 -121674255 + L2 LINE L2 2447 2905 -409 1434 207 0 46 chr6 60741080 60741404 -121673838 + AluJo SINE Alu 3 311 -1 6592 69 0 4 chr6 60741927 60743175 -121672067 - L1PA8 LINE L1 -3 6169 4934 24189 135 39 46 chr6 60743180 60746293 -121668949 - L1PA8 LINE L1 -1591 4555 1481 2221 102 41 0 chr6 60746293 60746588 -121668654 - AluY SINE Alu -4 307 1 24189 135 39 46 chr6 60746588 60748059 -121667183 - L1PA8 LINE L1 -4665 1481 2 30 0 0 0 chr6 60748069 60748099 -121667143 + AT_rich Low_complexity Low_complexity 1 30 0 1521 215 6 12 chr6 60748170 60748500 -121666742 - L1M3 LINE L1 -376 5804 5477 280 281 11 0 chr6 60748538 60748627 -121666615 + L1MC/D LINE L1 5683 5772 -2036 438 328 66 0 chr6 60748853 60749036 -121666206 + MLT1J LTR MaLR 191 385 -126 4243 286 112 30 chr6 60749112 60750939 -121664303 - L2 LINE L2 -655 2659 682 476 71 29 0 chr6 60750985 60751055 -121664187 - MSTA LTR MaLR 0 428 357 1474 149 8 0 chr6 60751056 60751291 -121663951 + AluSx SINE Alu 1 237 -75 734 82 107 25 chr6 60751395 60751517 -121663725 - MER30 DNA MER1_type -98 132 1 * 10765 134 15 9 chr6 60751517 60753233 -121662009 + Tigger1 DNA MER2_type 691 2417 -1 911 310 111 8 chr6 60753328 60753796 -121661446 - Tigger8 DNA MER2_type -149 517 2 27 0 0 0 chr6 60755383 60755410 -121659832 + AT_rich Low_complexity Low_complexity 1 27 0 484 317 134 34 chr6 60756125 60756606 -121658636 - L2 LINE L2 -62 3251 2149 2072 110 0 3 chr6 60757547 60757829 -121657413 - AluSg SINE Alu -29 281 1 22 0 0 0 chr6 60757841 60757863 -121657379 + AT_rich Low_complexity Low_complexity 1 22 0 334 313 36 0 chr6 60757949 60758032 -121657210 - L2 LINE L2 -50 3222 3137 260 222 61 30 chr6 60758408 60758507 -121656735 - L1ME4a LINE L1 -17 6104 6003 243 0 0 0 chr6 60758513 60758540 -121656702 + (TG)n Simple_repeat Simple_repeat 2 28 0 227 209 30 30 chr6 60758587 60758654 -121656588 - L1ME4a LINE L1 -217 5904 5838 388 283 73 57 chr6 60758737 60758914 -121656328 + MER21B LTR ERV1 311 490 -373 1122 240 26 34 chr6 60758922 60759305 -121655937 + L1M4 LINE L1 4657 5036 -1110 616 126 0 0 chr6 60759454 60759541 -121655701 - AluS SINE Alu -225 87 1 1552 187 44 7 chr6 60759742 60760036 -121655206 + AluJb SINE Alu 1 305 -7 1037 245 51 35 chr6 60760172 60760486 -121654756 - PABL_B LTR ERV1 0 667 349 401 316 24 34 chr6 60760494 60760703 -121654539 - PABL_B LTR ERV1 -460 207 1 182 316 213 22 chr6 60760905 60761041 -121654201 + MIR3 SINE MIR 17 178 -30 1820 144 20 26 chr6 60761064 60761370 -121653872 + AluSx SINE Alu 1 304 -8 370 358 7 0 chr6 60761845 60761996 -121653246 - MIR SINE MIR -70 192 41 228 294 59 12 chr6 60762034 60762119 -121653123 - L3b LINE CR1 -318 1265 1177 301 360 106 26 chr6 60762132 60762396 -121652846 - L3 LINE CR1 -696 881 597 24 0 0 0 chr6 60762435 60762459 -121652783 + AT_rich Low_complexity Low_complexity 1 24 0 1300 227 93 39 chr6 60763566 60764007 -121651235 - MLT1C LTR MaLR 0 467 3 315 49 0 0 chr6 60764430 60764471 -121650771 + (TAA)n Simple_repeat Simple_repeat 2 42 0 449 330 37 5 chr6 60764478 60764669 -121650573 - MIR SINE MIR -61 201 5 1133 218 0 0 chr6 60764719 60764953 -121650289 - L1MD1 LINE L1 0 6242 6009 1797 166 54 27 chr6 60764957 60765330 -121649912 - L1MD1 LINE L1 -298 5944 5562 32 57 0 0 chr6 60765616 60765669 -121649573 + AT_rich Low_complexity Low_complexity 1 53 0 856 249 43 0 chr6 60766764 60766973 -121648269 - MER20 DNA MER1_type -1 218 1 186 405 20 26 chr6 60768084 60768237 -121647005 + L2 LINE L2 2904 3055 -217 1837 163 54 0 chr6 60769904 60770023 -121645219 + AluSx SINE Alu 1 112 -200 369 0 0 0 chr6 60770023 60770064 -121645178 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1837 163 54 0 chr6 60770064 60770239 -121645003 + AluSx SINE Alu 112 311 -1 857 162 0 34 chr6 60771482 60771630 -121643612 - FLAM_C SINE Alu 0 143 1 191 218 182 18 chr6 60773533 60773588 -121641654 + MIR SINE MIR 74 137 -71 247 295 0 18 chr6 60774100 60774266 -121640976 + GA-rich Low_complexity Low_complexity 3 165 0 378 0 0 0 chr6 60774746 60774788 -121640454 + (TA)n Simple_repeat Simple_repeat 2 43 0 2070 111 24 3 chr6 60774789 60775086 -121640156 - AluSq SINE Alu -10 303 1 24 0 0 0 chr6 60775185 60775209 -121640033 + AT_rich Low_complexity Low_complexity 1 24 0 539 211 47 16 chr6 60776103 60776231 -121639011 - MIR SINE MIR -10 252 121 1074 299 126 20 chr6 60776689 60777512 -121637730 - L2 LINE L2 0 3313 2400 207 167 0 0 chr6 60778567 60778603 -121636639 - L2 LINE L2 -21 3251 3216 444 97 0 0 chr6 60779005 60779067 -121636175 - Alu SINE Alu -251 62 1 1808 234 148 50 chr6 60779077 60779319 -121635923 - L1MDb LINE L1 -830 5576 5359 2081 121 3 35 chr6 60779319 60779455 -121635787 + AluSx SINE Alu 1 140 -172 2269 106 0 0 chr6 60779455 60779758 -121635484 + AluSc SINE Alu 3 305 -4 2081 121 3 35 chr6 60779758 60779935 -121635307 + AluSx SINE Alu 140 304 -8 1808 234 148 50 chr6 60779935 60780207 -121635035 - L1MDb LINE L1 -1047 5359 5115 2592 37 0 0 chr6 60780207 60780503 -121634739 - AluY SINE Alu -15 296 1 1808 234 148 50 chr6 60780503 60781110 -121634132 - L1MDb LINE L1 -1291 5115 4344 2276 43 0 0 chr6 60781117 60781419 -121633823 + L1PA4 LINE L1 5861 6162 0 817 281 69 29 chr6 60781475 60782588 -121632654 - L1MDb LINE L1 -2251 4155 2947 819 185 25 167 chr6 60782588 60782864 -121632378 - MER8 DNA MER2_type -1 238 2 817 281 69 29 chr6 60782864 60782903 -121632339 - L1MDb LINE L1 -3459 2947 2911 244 252 119 31 chr6 60783250 60783409 -121631833 - L1MDb LINE L1 -3841 2565 2393 23 0 0 0 chr6 60783527 60783550 -121631692 + AT_rich Low_complexity Low_complexity 1 23 0 457 288 53 50 chr6 60783767 60784587 -121630655 - L1MDb LINE L1 -4607 1980 1119 921 135 30 100 chr6 60784877 60785077 -121630165 + MER2 DNA MER2_type 18 203 -142 797 175 0 29 chr6 60787251 60787388 -121627854 - FLAM_C SINE Alu 0 133 1 2579 77 20 0 chr6 60787698 60788049 -121627193 - L1PA13 LINE L1 0 6163 5806 214 106 43 0 chr6 60788114 60788161 -121627081 + (TA)n Simple_repeat Simple_repeat 1 49 0 1368 235 128 7 chr6 60788187 60788682 -121626560 + MLT1F LTR MaLR 1 542 0 211 278 0 0 chr6 60789093 60789165 -121626077 + (TA)n Simple_repeat Simple_repeat 1 72 0 320 289 58 62 chr6 60789983 60790191 -121625051 + L3 LINE CR1 553 759 -818 419 197 0 0 chr6 60790261 60790337 -121624905 + MIR SINE MIR 1 76 -186 366 312 136 0 chr6 60790386 60790540 -121624702 - MIR SINE MIR -71 191 17 1011 99 0 0 chr6 60791172 60791313 -121623929 - AluSg/x SINE Alu -12 300 160 2002 121 0 20 chr6 60791314 60791620 -121623622 - AluSg SINE Alu -9 301 2 23 33 0 0 chr6 60792124 60792154 -121623088 + AT_rich Low_complexity Low_complexity 1 30 0 443 344 22 70 chr6 60793938 60794296 -121620946 + L2 LINE L2 2293 2633 -681 182 415 34 43 chr6 60794351 60794558 -121620684 + L2 LINE L2 3031 3235 -37 1404 199 75 23 chr6 60794894 60795241 -121620001 - MLT1A1 LTR MaLR 0 365 1 24 53 0 0 chr6 60795928 60795966 -121619276 + AT_rich Low_complexity Low_complexity 1 38 0 442 181 0 0 chr6 60797701 60797784 -121617458 - FLAM_A SINE Alu -59 83 1 319 309 89 53 chr6 60798587 60799024 -121616218 - L1MC/D LINE L1 -2004 5804 5352 222 282 13 26 chr6 60800308 60800386 -121614856 + GA-rich Low_complexity Low_complexity 2 78 0 1277 144 32 8 chr6 60800801 60801051 -121614191 - L1MA7 LINE L1 -10 6281 6026 21 82 0 0 chr6 60801765 60801814 -121613428 + AT_rich Low_complexity Low_complexity 1 49 0 2029 128 3 0 chr6 60801819 60802115 -121613127 - AluSx SINE Alu -15 297 1 277 277 0 84 chr6 60803081 60803164 -121612078 - L3 LINE CR1 -7 1570 1495 36 40 0 0 chr6 60803931 60803981 -121611261 + AT_rich Low_complexity Low_complexity 1 50 0 262 259 67 140 chr6 60804321 60804514 -121610728 + MIR SINE MIR 5 183 -79 570 76 13 0 chr6 60804797 60804876 -121610366 + MADE1 DNA Mariner 1 80 0 190 413 39 32 chr6 60805193 60805348 -121609894 - L2 LINE L2 -180 3092 2937 344 263 31 62 chr6 60805823 60805983 -121609259 + LTR33 LTR ERVL 10 164 -357 312 231 8 100 chr6 60806069 60806199 -121609043 + LTR33 LTR ERVL 402 519 -2 267 31 0 0 chr6 60806572 60806604 -121608638 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr6 60806876 60806905 -121608337 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr6 60807966 60808018 -121607224 + AT_rich Low_complexity Low_complexity 1 52 0 499 313 73 0 chr6 60808762 60808954 -121606288 - MIR SINE MIR -4 258 53 798 209 70 70 chr6 60809193 60809566 -121605676 - L1MC5 LINE L1 -111 7850 7478 198 208 0 0 chr6 60810564 60810612 -121604630 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 2884 6 0 0 chr6 60810956 60811273 -121603969 + AluYb8 SINE Alu 1 317 -1 22 0 0 0 chr6 60812886 60812908 -121602334 + AT_rich Low_complexity Low_complexity 1 22 0 299 220 64 18 chr6 60813391 60813500 -121601742 + L1MC4 LINE L1 7928 8041 -1 2681 96 5 3 chr6 60813801 60814175 -121601067 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr6 60817689 60817714 -121597528 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 60817806 60817834 -121597408 + AT_rich Low_complexity Low_complexity 1 28 0 228 245 43 64 chr6 60818272 60818366 -121596876 + L2 LINE L2 575 666 -2648 370 235 96 0 chr6 60818446 60818561 -121596681 - L1MC5 LINE L1 -30 7931 7806 2194 278 32 62 chr6 60818656 60819477 -121595765 + L2 LINE L2 905 1700 -1614 966 147 117 5 chr6 60819479 60819620 -121595622 - L1MA6 LINE L1 -360 5940 5769 303 28 0 0 chr6 60819620 60819656 -121595586 + (CA)n Simple_repeat Simple_repeat 2 37 0 966 147 117 5 chr6 60819656 60819711 -121595531 - L1MA6 LINE L1 -531 5769 5722 548 280 91 33 chr6 60819751 60820105 -121595137 + L2 LINE L2 1696 2136 -1178 1039 287 103 32 chr6 60820110 60820862 -121594380 + L2 LINE L2 2451 3284 -29 1213 195 25 13 chr6 60821046 60821282 -121593960 - MER8 DNA MER2_type 0 239 1 22 0 0 0 chr6 60821697 60821719 -121593523 + AT_rich Low_complexity Low_complexity 1 22 0 2021 110 3 10 chr6 60822165 60822464 -121592778 - AluSg SINE Alu -13 297 1 207 0 0 0 chr6 60823160 60823183 -121592059 + (A)n Simple_repeat Simple_repeat 1 23 0 504 319 37 6 chr6 60823183 60823346 -121591896 + MIR3 SINE MIR 19 186 -22 476 274 40 0 chr6 60823805 60823929 -121591313 + MIR SINE MIR 85 213 -49 24 32 0 0 chr6 60824538 60824569 -121590673 + AT_rich Low_complexity Low_complexity 1 31 0 544 271 146 38 chr6 60825277 60825730 -121589512 - HAL1 LINE L1 -19 2488 1987 24 0 0 0 chr6 60825958 60825982 -121589260 + AT_rich Low_complexity Low_complexity 1 24 0 359 287 98 12 chr6 60826004 60826168 -121589074 - HAL1 LINE L1 -910 1597 1420 231 174 29 14 chr6 60826166 60826235 -121589007 - L1 LINE L1 -3047 3335 3266 * 288 180 22 34 chr6 60826244 60826333 -121588909 - L1MA4A LINE L1 -7 6296 6209 3874 234 75 51 chr6 60826333 60827439 -121587803 - L1 LINE L1 -3100 3282 2204 2254 112 0 3 chr6 60827439 60827743 -121587499 - AluSq SINE Alu -10 303 1 3874 234 75 51 chr6 60827743 60829129 -121586113 - L1 LINE L1 -4178 2204 795 481 298 115 77 chr6 60829727 60830415 -121584827 - HAL1 LINE L1 -1651 856 143 599 316 216 25 chr6 60830597 60831503 -121583739 - L2 LINE L2 0 3313 2232 180 349 24 12 chr6 60833053 60833136 -121582106 - MIR3 SINE MIR -10 198 115 5705 157 18 3 chr6 60833315 60834879 -121580363 - L1PB2 LINE L1 0 6151 4567 25 0 0 0 chr6 60837911 60837936 -121577306 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 60837982 60838006 -121577236 + AT_rich Low_complexity Low_complexity 1 24 0 2240 84 0 0 chr6 60838336 60838611 -121576631 - AluSg SINE Alu -14 296 22 25 75 0 0 chr6 60838980 60839033 -121576209 + AT_rich Low_complexity Low_complexity 1 53 0 518 155 10 10 chr6 60840331 60840428 -121574814 - FLAM_A SINE Alu -14 128 32 1849 145 34 3 chr6 60840825 60841122 -121574120 - AluSx SINE Alu -6 306 1 23 0 0 0 chr6 60841846 60841869 -121573373 + AT_rich Low_complexity Low_complexity 1 23 0 204 308 87 29 chr6 60841941 60842045 -121573197 + L2 LINE L2 3193 3302 -11 1155 115 0 0 chr6 60842655 60842812 -121572430 + AluSg/x SINE Alu 136 292 -20 180 263 0 0 chr6 60843366 60843404 -121571838 + L2 LINE L2 3219 3256 -16 2244 115 3 3 chr6 60844536 60844848 -121570394 - AluSp SINE Alu -1 312 1 22 0 0 0 chr6 60845168 60845190 -121570052 + AT_rich Low_complexity Low_complexity 1 22 0 349 259 99 19 chr6 60846155 60846317 -121568925 - MER112 DNA MER1_type -48 212 38 2117 114 50 34 chr6 60846412 60846770 -121568472 + THE1B LTR MaLR 1 364 0 338 216 194 0 chr6 60846820 60846954 -121568288 - L1MC5 LINE L1 -173 7788 7629 1726 126 79 0 chr6 60847546 60847800 -121567442 + AluSg1 SINE Alu 7 280 -29 206 330 108 77 chr6 60848065 60848574 -121566668 - L2 LINE L2 -639 2675 2151 960 212 17 6 chr6 60850130 60850309 -121564933 - MER5A DNA MER1_type 0 189 9 342 0 0 0 chr6 60850584 60850622 -121564620 + (CA)n Simple_repeat Simple_repeat 2 39 0 1511 159 37 33 chr6 60851239 60851510 -121563732 - AluJo SINE Alu -35 277 6 442 371 59 5 chr6 60851975 60852196 -121563046 - MIR SINE MIR 0 262 30 287 258 125 39 chr6 60854274 60854402 -121560840 + MIR SINE MIR 1 139 -123 1583 211 9 36 chr6 60854404 60854699 -121560543 - MER58B DNA MER1_type -2082 338 52 2391 63 7 0 chr6 60854699 60855000 -121560242 + AluY SINE Alu 1 303 -8 1583 211 9 36 chr6 60855000 60855041 -121560201 - MER58B DNA MER1_type -2368 52 11 246 291 12 0 chr6 60855048 60855134 -121560108 + MIR SINE MIR 128 214 -48 544 227 7 21 chr6 60856720 60856861 -121558381 + MER69 DNA AcHobo 2149 2287 -239 42471 35 22 1 chr6 60856861 60862916 -121552326 + L1PA3 LINE L1 8 6189 0 410 270 94 17 chr6 60862941 60863174 -121552068 + MER69 DNA AcHobo 2264 2514 -12 282 319 65 7 chr6 60863462 60863600 -121551642 + MIR SINE MIR 107 252 -10 310 303 32 64 chr6 60863829 60864017 -121551225 + MARNA DNA Mariner 391 572 -14 591 88 0 0 chr6 60864478 60864558 -121550684 - MADE1 DNA Mariner 0 80 1 33 25 0 0 chr6 60865269 60865309 -121549933 + AT_rich Low_complexity Low_complexity 1 40 0 990 170 0 0 chr6 60867510 60867669 -121547573 + FRAM SINE Alu 5 163 -3 1328 207 47 92 chr6 60870510 60870998 -121544244 + MLT1C LTR MaLR 2 467 0 22 0 0 0 chr6 60871153 60871175 -121544067 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 60871276 60871297 -121543945 + AT_rich Low_complexity Low_complexity 1 21 0 277 266 122 7 chr6 60871306 60871445 -121543797 - L1ME LINE L1 -255 5866 5712 230 300 30 35 chr6 60872773 60872973 -121542269 + L1MEd LINE L1 939 1137 -4982 396 328 98 44 chr6 60873003 60873460 -121541782 + HAL1 LINE L1 1284 1765 -742 288 0 0 0 chr6 60873933 60873965 -121541277 + (TG)n Simple_repeat Simple_repeat 2 33 0 743 234 0 0 chr6 60873972 60874109 -121541133 + MER82 DNA MER2_type 2 138 -515 3894 134 17 129 chr6 60874494 60876046 -121539196 + pTR5 LTR ERV1 741 2606 0 1797 237 53 11 chr6 60876119 60876553 -121538689 + MER82 DNA MER2_type 201 652 -1 225 65 0 0 chr6 60876554 60876585 -121538657 + (TG)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr6 60876773 60876794 -121538448 + (T)n Simple_repeat Simple_repeat 1 21 0 2203 93 10 0 chr6 60877025 60877336 -121537906 + L1PA14 LINE L1 5846 6159 -2 2419 172 16 12 chr6 60877428 60877852 -121537390 - MSTB LTR MaLR 0 426 1 338 305 54 42 chr6 60878614 60878781 -121536461 + MIR SINE MIR 5 173 -89 197 383 53 0 chr6 60878793 60878824 -121536418 + L2 LINE L2 3189 3217 -96 213 39 0 0 chr6 60878824 60878850 -121536392 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 197 383 53 0 chr6 60878850 60878912 -121536330 + L2 LINE L2 3217 3287 -26 237 108 0 0 chr6 60878914 60878951 -121536291 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 346 279 116 0 chr6 60878971 60879100 -121536142 - MIR SINE MIR -24 238 95 2532 118 5 8 chr6 60879465 60879839 -121535403 - THE1C LTR MaLR 0 375 3 487 189 22 0 chr6 60879896 60879986 -121535256 - Tigger7 DNA MER2_type -8 2479 2388 * 1149 226 49 49 chr6 60879985 60880250 -121534992 - Tigger7 DNA MER2_type -467 266 2 439 299 32 19 chr6 60880252 60880409 -121534833 + MLT1J LTR MaLR 83 241 -270 358 335 106 28 chr6 60880784 60881002 -121534240 - MIR SINE MIR -3 259 25 958 224 5 10 chr6 60881355 60881551 -121533691 + Tigger3b DNA MER2_type 12 206 -1025 490 211 0 0 chr6 60881561 60881688 -121533554 - ALR/Alpha Satellite centromeric 0 127 1 2269 114 23 8 chr6 60881715 60882066 -121533176 + Tigger3b DNA MER2_type 205 560 -671 604 217 129 95 chr6 60882469 60882732 -121532510 + L1PBb LINE L1 794 1065 -5784 1094 290 24 68 chr6 60882882 60883436 -121531806 + L1PBb LINE L1 999 1610 -5238 5173 252 34 12 chr6 60883449 60885639 -121529603 + L1PBb LINE L1 1678 3909 -2939 2210 126 0 0 chr6 60885639 60885940 -121529302 + AluSg SINE Alu 1 301 -9 5173 252 34 12 chr6 60885940 60885965 -121529277 + L1PBb LINE L1 3909 3932 -2916 42 20 0 0 chr6 60885965 60886014 -121529228 + AT_rich Low_complexity Low_complexity 1 49 0 2854 166 60 17 chr6 60886014 60886615 -121528627 + Tigger3b DNA MER2_type 606 1232 0 2354 99 0 0 chr6 60887260 60887563 -121527679 - AluY SINE Alu -8 303 1 27 49 0 0 chr6 60888878 60888919 -121526323 + AT_rich Low_complexity Low_complexity 1 41 0 683 220 38 42 chr6 60890034 60890105 -121525137 - MLT1A2 LTR MaLR -138 252 182 321 26 0 0 chr6 60890105 60890143 -121525099 + (GA)n Simple_repeat Simple_repeat 1 38 0 683 220 38 42 chr6 60890143 60890294 -121524948 - MLT1A2 LTR MaLR -208 182 12 466 254 7 51 chr6 60890906 60891044 -121524198 + LTR16C LTR ERVL 262 393 -98 2051 135 0 3 chr6 60891182 60891485 -121523757 - AluSg SINE Alu -8 302 1 196 193 18 105 chr6 60992143 60992200 -121423042 - L2 LINE L2 -3 3269 3218 21 0 0 0 chr6 60992803 60992824 -121422418 + AT_rich Low_complexity Low_complexity 1 21 0 2125 105 0 3 chr6 60994157 60994451 -121420791 + AluSg SINE Alu 2 294 -16 184 324 59 0 chr6 60994494 60994562 -121420680 - L2 LINE L2 -4 3309 3238 26 0 0 0 chr6 60995042 60995068 -121420174 + AT_rich Low_complexity Low_complexity 1 26 0 23 68 0 0 chr6 60995101 60995145 -121420097 + AT_rich Low_complexity Low_complexity 1 44 0 1230 90 5 5 chr6 60996591 60996780 -121418462 + L1PB1 LINE L1 5260 5448 -703 936 143 19 6 chr6 60996780 60996941 -121418301 - AluSg/x SINE Alu -1 311 149 4624 101 26 3 chr6 60996958 60997653 -121417589 + L1PB1 LINE L1 5440 6150 -1 397 77 89 24 chr6 60997695 60997863 -121417379 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 30 0 0 chr6 60997863 60997896 -121417346 + AT_rich Low_complexity Low_complexity 1 33 0 296 99 76 35 chr6 60997898 60998070 -121417172 + (TA)n Simple_repeat Simple_repeat 2 180 0 198 0 0 0 chr6 60998150 60998172 -121417070 + (TA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr6 60998307 60998329 -121416913 + AT_rich Low_complexity Low_complexity 1 22 0 184 224 164 0 chr6 60998585 60998652 -121416590 - L2 LINE L2 -62 3251 3174 252 228 0 18 chr6 61000628 61000685 -121414557 - MLT1I-int LTR MaLR -1309 62 7 571 283 92 41 chr6 61000691 61001005 -121414237 - MLT1I LTR MaLR 0 409 80 451 313 84 40 chr6 61001093 61001264 -121413978 + MIR SINE MIR 1 188 -74 1218 72 106 11 chr6 61001264 61001408 -121413834 + MER107 DNA MER1_type 1 167 -30 180 0 0 0 chr6 61001408 61001428 -121413814 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1218 72 106 11 chr6 61001428 61001463 -121413779 + MER107 DNA MER1_type 167 197 0 451 313 84 40 chr6 61001463 61001540 -121413702 + MIR SINE MIR 188 260 -2 23 0 0 0 chr6 61002265 61002288 -121412954 + AT_rich Low_complexity Low_complexity 1 23 0 225 308 0 0 chr6 61002983 61003035 -121412207 - L2 LINE L2 -17 3255 3204 1849 253 40 54 chr6 61003272 61004193 -121411049 + L1MEc LINE L1 1765 2648 -3567 2298 94 7 0 chr6 61004193 61004502 -121410740 + AluY SINE Alu 1 311 0 1849 253 40 54 chr6 61004502 61004641 -121410601 + L1MEc LINE L1 2648 2787 -3428 1139 215 15 69 chr6 61004649 61005039 -121410203 + L1MEc LINE L1 4135 4503 -1712 1614 181 3 20 chr6 61005061 61005359 -121409883 + AluSx SINE Alu 3 295 -17 1703 194 17 6 chr6 61005873 61006228 -121409014 + MER46B DNA MER2_type 1 234 -2 4167 207 40 10 chr6 61006230 61007933 -121407309 + L1MB7 LINE L1 4508 6253 0 22 0 0 0 chr6 61007953 61007975 -121407267 + AT_rich Low_complexity Low_complexity 1 22 0 234 365 81 46 chr6 61008791 61009186 -121406056 + L2 LINE L2 1696 2104 -1210 809 240 31 72 chr6 61009308 61009629 -121405613 - L1M4 LINE L1 -1391 4755 4448 380 127 32 32 chr6 61009629 61009786 -121405456 + (TA)n Simple_repeat Simple_repeat 2 158 0 805 218 111 8 chr6 61009836 61010088 -121405154 - L1M4 LINE L1 -1778 4368 4091 725 314 33 8 chr6 61010088 61010448 -121404794 - L1M4 LINE L1 -2299 3847 3479 1805 90 4 12 chr6 61011049 61011293 -121403949 - AluSp SINE Alu -13 300 59 275 0 0 28 chr6 61014168 61014204 -121401038 + (TTA)n Simple_repeat Simple_repeat 2 36 0 396 0 0 0 chr6 61014964 61015008 -121400234 + (CA)n Simple_repeat Simple_repeat 2 45 0 184 136 91 23 chr6 61015939 61015983 -121399259 + L3b LINE CR1 1223 1269 -314 21 0 0 0 chr6 61018394 61018415 -121396827 + AT_rich Low_complexity Low_complexity 1 21 0 235 244 144 22 chr6 61018686 61018776 -121396466 - L2 LINE L2 -47 3225 3125 219 250 19 0 chr6 61019659 61019711 -121395531 + GA-rich Low_complexity Low_complexity 2 54 0 759 234 33 5 chr6 61019772 61019956 -121395286 + MER5A DNA MER1_type 1 189 0 22 35 0 0 chr6 61022885 61022914 -121392328 + AT_rich Low_complexity Low_complexity 1 29 0 340 294 0 40 chr6 61023907 61024033 -121391209 + L2 LINE L2 3193 3313 0 29 28 0 0 chr6 61025131 61025167 -121390075 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 61025298 61025320 -121389922 + AT_rich Low_complexity Low_complexity 1 22 0 2033 130 3 22 chr6 61025576 61025892 -121389350 + AluSx SINE Alu 1 310 -2 4799 80 89 3 chr6 61026402 61027112 -121388130 + L1PA7 LINE L1 5384 6154 0 22 56 0 0 chr6 61027501 61027537 -121387705 + AT_rich Low_complexity Low_complexity 1 36 0 2377 162 21 7 chr6 61027793 61028213 -121387029 - MSTB LTR MaLR 0 426 1 236 270 100 50 chr6 61028248 61028348 -121386894 - MER5A DNA MER1_type -22 167 63 198 348 0 0 chr6 61028331 61028377 -121386865 - MER5B DNA MER1_type -75 103 58 * 2106 125 0 3 chr6 61029111 61029416 -121385826 + AluSg SINE Alu 1 304 -6 2342 75 0 28 chr6 61029815 61030135 -121385107 + AluY SINE Alu 1 311 0 6256 48 1 9 chr6 61030167 61030956 -121384286 + L1PA7 LINE L1 5371 6153 -1 4905 176 28 95 chr6 61031384 61032977 -121382265 - L1PB4 LINE L1 0 6156 4734 1297 44 0 0 chr6 61032977 61033132 -121382110 + L1PA5 LINE L1 5995 6154 0 4905 176 28 95 chr6 61033132 61033486 -121381756 - L1PB4 LINE L1 -1422 4734 4358 233 138 103 69 chr6 61033812 61033870 -121381372 + L2 LINE L2 3254 3313 0 2303 87 0 3 chr6 61033895 61034195 -121381047 - AluY SINE Alu -12 299 1 230 310 60 26 chr6 61034261 61034377 -121380865 - L2 LINE L2 -27 3286 3167 394 296 55 69 chr6 61035878 61036169 -121379073 - MLT1J LTR MaLR -2 509 223 310 311 111 21 chr6 61036509 61036699 -121378543 + L1M4 LINE L1 2205 2411 -3735 418 298 34 39 chr6 61037047 61037255 -121377987 + MIR SINE MIR 49 255 -7 34 55 0 0 chr6 61037443 61037498 -121377744 + AT_rich Low_complexity Low_complexity 1 55 0 1597 189 48 21 chr6 61037797 61038131 -121377111 + MER2 DNA MER2_type 1 343 -1 927 283 39 41 chr6 61038354 61038943 -121376299 + MLT1H1 LTR MaLR 1 544 -11 518 228 0 41 chr6 61039358 61039481 -121375761 + FLAM_C SINE Alu 3 120 -13 24 77 0 0 chr6 61039481 61039533 -121375709 + AT_rich Low_complexity Low_complexity 1 52 0 926 281 97 9 chr6 61039771 61040102 -121375140 + L2 LINE L2 1711 2070 -1244 864 321 110 25 chr6 61040147 61040723 -121374519 + L2 LINE L2 2615 3251 -62 2021 187 26 19 chr6 61040723 61041146 -121374096 + MSTB LTR MaLR 1 426 0 864 321 110 25 chr6 61041146 61041215 -121374027 + L2 LINE L2 3251 3313 0 354 328 97 21 chr6 61041223 61041461 -121373781 + L1ME4a LINE L1 5765 6020 -101 24 67 0 0 chr6 61041469 61041514 -121373728 + AT_rich Low_complexity Low_complexity 1 45 0 2575 122 15 0 chr6 61041553 61041946 -121373296 - L1PA11 LINE L1 0 6174 5776 257 276 41 10 chr6 61041863 61041961 -121373281 - L1MC/D LINE L1 -1952 5856 5756 5158 188 14 11 chr6 61042661 61043870 -121371372 - L1MA7 LINE L1 0 7710 6500 * 28323 42 1 2 chr6 61043867 61047379 -121367863 - L1PA3 LINE L1 -2283 3863 356 12566 41 3 0 chr6 61047379 61049722 -121365520 + L1PA3 LINE L1 3857 6203 0 10745 224 38 51 chr6 61049722 61050393 -121364849 - L1MA7 LINE L1 -1053 6512 5834 387 41 0 0 chr6 61050393 61050442 -121364800 + (TG)n Simple_repeat Simple_repeat 1 49 0 10745 224 38 51 chr6 61050442 61050518 -121364724 - L1MA7 LINE L1 -1731 5834 5759 252 0 0 0 chr6 61050518 61050546 -121364696 + (TG)n Simple_repeat Simple_repeat 2 29 0 10745 224 38 51 chr6 61050546 61051159 -121364083 - L1MA7 LINE L1 -1806 5759 5140 1613 154 7 0 chr6 61051159 61051444 -121363798 - L1MA3 LINE L1 0 6305 6019 10745 224 38 51 chr6 61051444 61051610 -121363632 - L1MA7 LINE L1 -2425 5140 4973 1977 55 0 4 chr6 61051610 61051865 -121363377 - L1PA4 LINE L1 0 6155 5902 10745 224 38 51 chr6 61051865 61054231 -121361011 - L1MA7 LINE L1 -2592 4973 2663 1524 215 36 49 chr6 61054228 61054618 -121360624 - L1PA16 LINE L1 -1 6165 5781 * 6390 246 28 35 chr6 61054598 61056655 -121358587 - L1M3de LINE L1 -1098 2137 2 2096 142 0 0 chr6 61056772 61057075 -121358167 - AluSx SINE Alu -9 303 1 354 221 80 61 chr6 61057075 61057228 -121358014 - L1MA7 LINE L1 -5732 1754 1596 2229 89 16 22 chr6 61057302 61057712 -121357530 - AluSq SINE Alu 0 408 1 861 237 41 27 chr6 61060534 61060829 -121354413 + Charlie4a DNA MER1_type 155 453 -55 383 352 82 19 chr6 61061323 61061641 -121353601 + MLT1K LTR MaLR 214 551 -37 24 0 0 0 chr6 61063662 61063686 -121351556 + AT_rich Low_complexity Low_complexity 1 24 0 239 356 76 23 chr6 61065734 61065866 -121349376 - L2 LINE L2 -11 3261 3123 271 378 127 27 chr6 61066493 61067054 -121348188 - L2 LINE L2 -980 2334 1718 2267 96 0 13 chr6 61067877 61068190 -121347052 - AluSc SINE Alu 0 309 1 246 149 15 60 chr6 61068284 61068351 -121346891 + A-rich Low_complexity Low_complexity 1 64 0 209 105 132 0 chr6 61068770 61068808 -121346434 - L2 LINE L2 -4 3309 3267 347 102 0 0 chr6 61069549 61069608 -121345634 - L1MA1 LINE L1 -7 6295 6237 539 308 52 9 chr6 61069938 61070149 -121345093 + Charlie2 DNA MER1_type 27 246 -2616 3397 231 109 100 chr6 61070205 61071364 -121343878 - L1ME1 LINE L1 -207 5959 4813 387 0 0 0 chr6 61071364 61071407 -121343835 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 3397 231 109 100 chr6 61071407 61071426 -121343816 - L1ME1 LINE L1 -1353 4813 4796 1673 182 3 0 chr6 61071426 61071712 -121343530 - AluSx SINE Alu -25 287 1 3397 231 109 100 chr6 61071712 61073573 -121341669 - L1ME1 LINE L1 -1370 4796 2871 1902 140 3 0 chr6 61073573 61073858 -121341384 - AluSx SINE Alu -26 286 1 3397 231 109 100 chr6 61073858 61073965 -121341277 - L1ME1 LINE L1 -3295 2871 2767 315 353 101 58 chr6 61074357 61075237 -121340005 - L2 LINE L2 -556 2758 1841 187 326 0 0 chr6 61075830 61075876 -121339366 + L2 LINE L2 3210 3255 -17 40977 66 2 4 chr6 61076016 61082173 -121333069 + L1PA5 LINE L1 11 6154 0 253 311 28 0 chr6 61082180 61082286 -121332956 + L1M4 LINE L1 2722 2830 -3316 202 356 101 36 chr6 61082730 61083224 -121332018 - L2 LINE L2 -2432 882 357 * 236 343 38 0 chr6 61083215 61083320 -121331922 + L2 LINE L2 2013 2121 -1193 231 36 0 0 chr6 61083706 61083734 -121331508 + (TG)n Simple_repeat Simple_repeat 2 29 0 824 233 41 92 chr6 61083897 61084287 -121330955 - MLT1A2 LTR MaLR -4 370 1 239 339 169 0 chr6 61084908 61085026 -121330216 + L2 LINE L2 3129 3266 -6 1326 170 55 84 chr6 61085861 61086172 -121329070 + AluJo SINE Alu 1 302 -10 21 0 0 0 chr6 61087292 61087313 -121327929 + AT_rich Low_complexity Low_complexity 1 21 0 4355 118 53 1 chr6 61087510 61088189 -121327053 - LTR62 LTR ERVK -5 714 1 269 275 275 0 chr6 61088302 61088411 -121326831 - L2 LINE L2 0 3272 3134 188 302 143 74 chr6 61088470 61088659 -121326583 - L2 LINE L2 -337 2977 2776 381 179 10 122 chr6 61089132 61089328 -121325914 + MER104 DNA MER2_type 5 178 -2 28 48 0 0 chr6 61090459 61090501 -121324741 + AT_rich Low_complexity Low_complexity 1 42 0 264 275 54 39 chr6 61090575 61090674 -121324568 - L1MC/D LINE L1 -303 5818 5821 997 155 0 12 chr6 61090674 61090835 -121324407 + L1PA8A LINE L1 5973 6131 0 264 275 54 39 chr6 61090835 61090921 -121324321 - L1MC/D LINE L1 -299 5822 5739 * 9987 188 38 14 chr6 61090917 61093152 -121322090 - L1 LINE L1 -1717 4665 2375 23 0 0 0 chr6 61093176 61093199 -121322043 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr6 61093481 61093532 -121321710 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr6 61093551 61093573 -121321669 + AT_rich Low_complexity Low_complexity 1 22 0 353 22 22 0 chr6 61094627 61094673 -121320569 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 576 188 134 99 chr6 61094898 61095121 -121320121 - MLT1H LTR MaLR 0 549 319 314 250 0 0 chr6 61095846 61095934 -121319308 + (TA)n Simple_repeat Simple_repeat 2 89 0 1169 217 45 30 chr6 61096737 61097074 -121318168 + MER2 DNA MER2_type 2 343 -1 279 250 14 0 chr6 61097529 61097601 -121317641 + MER112 DNA MER1_type 181 253 -7 198 0 0 0 chr6 61097763 61097785 -121317457 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 421 222 17 17 chr6 61098308 61098538 -121316704 + GA-rich Low_complexity Low_complexity 1 230 0 42723 36 21 1 chr6 61098905 61104936 -121310306 - L1PA2 LINE L1 0 6155 3 279 314 104 20 chr6 61104935 61105164 -121310078 - L1MC/D LINE L1 -385 5785 5584 * 29 28 0 0 chr6 61105209 61105245 -121309997 + AT_rich Low_complexity Low_complexity 1 36 0 38 22 0 0 chr6 61105612 61105657 -121309585 + AT_rich Low_complexity Low_complexity 1 45 0 323 248 262 7 chr6 61105820 61105969 -121309273 - L1ME3A LINE L1 -219 5951 5765 271 309 134 0 chr6 61106079 61106176 -121309066 + MER5B DNA MER1_type 2 111 -67 1036 307 51 16 chr6 61106184 61106497 -121308745 + MER45C DNA AcHobo 2 325 -628 494 327 43 43 chr6 61106524 61107151 -121308091 - L1MC/D LINE L1 -1602 4544 3918 450 347 126 32 chr6 61107349 61107874 -121307368 + L2 LINE L2 1744 2317 -997 561 292 133 51 chr6 61107884 61108274 -121306968 - MLT1J2 LTR MaLR -24 422 1 11597 136 17 89 chr6 61109157 61109202 -121306040 - L1P4 LINE L1 -688 5486 5439 4308 97 10 3 chr6 61109202 61109812 -121305430 - L1PA11 LINE L1 -1 6173 5560 11597 136 17 89 chr6 61109812 61112365 -121302877 - L1P4 LINE L1 -735 5439 3088 411 201 291 37 chr6 61112970 61113159 -121302083 - MLT1J1 LTR MaLR -209 237 1 660 294 112 30 chr6 61113740 61114009 -121301233 - HERVL LTR ERVL -1331 4433 4143 447 264 106 16 chr6 61114112 61114345 -121300897 - HERVL LTR ERVL -1546 3939 3687 270 301 15 38 chr6 61114400 61114533 -121300709 - HERVL LTR ERVL -2161 3324 3195 1574 45 5 0 chr6 61114631 61114829 -121300413 - L1PA14 LINE L1 -4 6157 5959 3630 168 68 3 chr6 61114983 61115043 -121300199 - L1MA8 LINE L1 -3 6288 6233 207 0 0 0 chr6 61115043 61115066 -121300176 + (CA)n Simple_repeat Simple_repeat 2 24 0 3630 168 68 3 chr6 61115066 61115726 -121299516 - L1MA8 LINE L1 -58 6233 5521 509 320 17 29 chr6 61115857 61116029 -121299213 - MER5A DNA MER1_type -3 186 17 215 298 18 0 chr6 61116174 61116231 -121299011 + L2 LINE L2 3238 3295 -18 210 71 0 0 chr6 61116232 61116260 -121298982 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 205 178 0 44 chr6 61117321 61117366 -121297876 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 352 333 111 15 chr6 61118180 61118378 -121296864 + MIR SINE MIR 45 261 -1 593 167 201 21 chr6 61118568 61118712 -121296530 - MER5A DNA MER1_type -10 179 10 1763 131 33 67 chr6 61118813 61119173 -121296069 + MER7A DNA MER2_type 1 346 0 439 243 58 19 chr6 61119229 61119332 -121295910 - MER5A DNA MER1_type -82 107 1 1015 48 0 0 chr6 61119513 61119638 -121295604 + L1PA7 LINE L1 5915 6039 -115 942 51 34 0 chr6 61119738 61119856 -121295386 + L1PA7 LINE L1 6031 6152 -2 21 36 0 0 chr6 61119918 61119946 -121295296 + AT_rich Low_complexity Low_complexity 1 28 0 637 288 68 14 chr6 61120998 61121220 -121294022 - MIR SINE MIR -27 235 2 197 296 98 91 chr6 61121355 61121487 -121293755 + MIR3 SINE MIR 37 169 -39 1429 84 5 20 chr6 61124675 61124877 -121290365 - L1PA13 LINE L1 -11 6152 5954 215 337 72 0 chr6 61124946 61125029 -121290213 + MER5B DNA MER1_type 74 162 -16 247 311 88 26 chr6 61125096 61125289 -121289953 - MIR SINE MIR -55 207 3 598 287 134 4 chr6 61125871 61126125 -121289117 - MLT1I LTR MaLR -17 392 106 2297 75 0 0 chr6 61126185 61126464 -121288778 + AluSg SINE Alu 1 279 -31 411 21 0 0 chr6 61126464 61126512 -121288730 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 338 31 44 chr6 61126591 61126751 -121288491 - MIR3 SINE MIR -41 167 10 338 305 75 70 chr6 61126918 61127057 -121288185 - MIR SINE MIR 0 262 120 1538 184 47 4 chr6 61127057 61127334 -121287908 + AluJo SINE Alu 12 300 -12 338 305 75 70 chr6 61127334 61127407 -121287835 - MIR SINE MIR -142 120 49 1420 105 29 0 chr6 61128254 61128464 -121286778 + L1PA13 LINE L1 5945 6160 -3 200 372 139 14 chr6 61129050 61129265 -121285977 - L2 LINE L2 -238 3075 2834 * 937 336 110 33 chr6 61129253 61130015 -121285227 - L2 LINE L2 -417 2897 2077 353 325 53 12 chr6 61130029 61130198 -121285044 - L2 LINE L2 -1403 1911 1736 221 278 0 28 chr6 61130461 61130533 -121284709 + GA-rich Low_complexity Low_complexity 3 72 0 33 0 0 0 chr6 61130740 61130773 -121284469 + AT_rich Low_complexity Low_complexity 1 33 0 183 80 0 0 chr6 61131359 61131384 -121283858 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr6 61132286 61132315 -121282927 + AT_rich Low_complexity Low_complexity 1 29 0 1576 187 10 3 chr6 61132454 61132743 -121282499 - AluJo SINE Alu -10 302 12 2949 0 0 0 chr6 61132814 61133128 -121282114 + AluYb8 SINE Alu 1 314 -4 1864 174 8 20 chr6 61133381 61133732 -121281510 + MER7A DNA MER2_type 2 346 0 23 0 0 0 chr6 61134874 61134897 -121280345 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr6 61136758 61136813 -121278429 + AT_rich Low_complexity Low_complexity 1 55 0 414 175 0 0 chr6 61137462 61137542 -121277700 + CT-rich Low_complexity Low_complexity 2 81 0 2220 107 0 10 chr6 61137544 61137852 -121277390 - AluSq SINE Alu -3 310 6 182 370 16 16 chr6 61139239 61139366 -121275876 - L2 LINE L2 -314 2958 2832 200 255 0 0 chr6 61139668 61139715 -121275527 + L2 LINE L2 3267 3313 0 392 256 0 0 chr6 61139891 61139973 -121275269 - L2 LINE L2 0 3313 3232 463 264 161 85 chr6 61140322 61140769 -121274473 + LTR33 LTR ERVL 40 520 -1 28 48 0 0 chr6 61141434 61141476 -121273766 + AT_rich Low_complexity Low_complexity 1 42 0 2425 70 0 13 chr6 61142144 61142446 -121272796 - AluSg SINE Alu -12 298 1 181 322 124 55 chr6 61142700 61142902 -121272340 - MIR SINE MIR -42 220 5 281 265 144 0 chr6 61143051 61143183 -121272059 - MLT1L LTR MaLR -43 572 422 260 222 111 14 chr6 61143309 61143381 -121271861 - MLT1L LTR MaLR -536 79 1 2428 114 40 3 chr6 61143779 61144130 -121271112 + THE1B LTR MaLR 1 364 0 2112 126 0 0 chr6 61145027 61145328 -121269914 - AluSx SINE Alu -11 301 1 2224 100 6 10 chr6 61145466 61145784 -121269458 - AluY SINE Alu 0 318 2 852 333 61 26 chr6 61145970 61146430 -121268812 - L2 LINE L2 -1093 2221 1746 245 236 200 0 chr6 61146443 61146553 -121268689 - L2 LINE L2 -1905 1409 1278 386 245 31 125 chr6 61146576 61146768 -121268474 + MIR SINE MIR 41 214 -48 224 294 245 35 chr6 61146830 61146973 -121268269 - L2 LINE L2 -2074 1240 1068 1458 220 142 70 chr6 61147120 61147796 -121267446 + MER50 LTR ERV1 10 734 0 512 250 59 0 chr6 61147989 61148125 -121267117 + L1MA7 LINE L1 5875 6018 -273 393 313 23 23 chr6 61148133 61148261 -121266981 + MER5B DNA MER1_type 50 177 -1 789 233 33 0 chr6 61148265 61148445 -121266797 + MER5A DNA MER1_type 1 186 -3 345 377 36 39 chr6 61148455 61148695 -121266547 + L2 LINE L2 351 591 -2723 2485 103 46 0 chr6 61148695 61149043 -121266199 - THE1B LTR MaLR 0 364 1 345 377 36 39 chr6 61149043 61149107 -121266135 + L2 LINE L2 591 654 -2660 1067 136 79 13 chr6 61149126 61149354 -121265888 - L1MA8 LINE L1 -20 6271 6029 281 391 94 5 chr6 61149358 61149560 -121265682 - L2 LINE L2 -2962 352 133 249 371 22 0 chr6 61150127 61150216 -121265026 + L2 LINE L2 2579 2669 -645 2133 120 10 0 chr6 61150219 61150518 -121264724 - AluSq SINE Alu -11 302 1 596 283 52 16 chr6 61150627 61150878 -121264364 + MIR SINE MIR 3 262 0 387 370 90 19 chr6 61150910 61151332 -121263910 + L2 LINE L2 2819 3270 -43 21 36 0 0 chr6 61151771 61151799 -121263443 + AT_rich Low_complexity Low_complexity 1 28 0 2305 93 0 10 chr6 61152167 61152469 -121262773 + AluY SINE Alu 1 299 -12 2269 90 7 0 chr6 61153700 61153989 -121261253 + AluSc SINE Alu 1 291 -18 22 0 0 0 chr6 61154448 61154470 -121260772 + AT_rich Low_complexity Low_complexity 1 22 0 854 301 64 21 chr6 61154542 61154824 -121260418 - MLT1I LTR MaLR -10 399 106 358 376 0 20 chr6 61154911 61155117 -121260125 - MIR SINE MIR -42 220 23 185 315 197 16 chr6 61155736 61155863 -121259379 - L2 LINE L2 -8 3264 3115 26 64 0 0 chr6 61156139 61156186 -121259056 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr6 61156210 61156234 -121259008 + AT_rich Low_complexity Low_complexity 1 24 0 931 102 18 96 chr6 61157029 61157196 -121258046 - Tigger1 DNA MER2_type -316 2102 1949 915 92 0 8 chr6 61157197 61157316 -121257926 + AluSq/x SINE Alu 1 118 -194 12374 142 65 24 chr6 61157704 61158173 -121257069 - Tigger1 DNA MER2_type 0 2418 1970 2273 98 3 3 chr6 61158173 61158479 -121256763 + AluSq SINE Alu 1 306 -7 12374 142 65 24 chr6 61158479 61160277 -121254965 - Tigger1 DNA MER2_type -448 1970 51 186 43 0 0 chr6 61160277 61160300 -121254942 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 12374 142 65 24 chr6 61160300 61160353 -121254889 - Tigger1 DNA MER2_type -2367 51 2 297 362 11 21 chr6 61160972 61161160 -121254082 + L2 LINE L2 2850 3035 -237 189 285 177 46 chr6 61161469 61161599 -121253643 + L2 LINE L2 3117 3263 -50 269 273 211 57 chr6 61161760 61161969 -121253273 + MLT1L LTR MaLR 206 446 -169 1082 244 63 58 chr6 61161983 61162365 -121252877 - LTR52 LTR ERVL -3 418 35 209 244 26 103 chr6 61162414 61162492 -121252750 + L2 LINE L2 3241 3312 -1 305 323 46 46 chr6 61163012 61163142 -121252100 + L2 LINE L2 3142 3271 -1 252 411 40 0 chr6 61163569 61163693 -121251549 - L2 LINE L2 -37 3235 3107 344 300 41 49 chr6 61164140 61164407 -121250835 - MARNA DNA Mariner -62 524 260 235 281 35 0 chr6 61164545 61164602 -121250640 + MARNA DNA Mariner 445 503 -83 2243 125 0 0 chr6 61164707 61165018 -121250224 + AluSx SINE Alu 1 311 -1 604 329 8 49 chr6 61166345 61166588 -121248654 - MIR SINE MIR -1 261 29 730 248 12 6 chr6 61166958 61167119 -121248123 - MER5A DNA MER1_type 0 189 28 1830 174 126 5 chr6 61167120 61167500 -121247742 + MSTA LTR MaLR 3 428 0 241 186 0 0 chr6 61167624 61167667 -121247575 - MER5A DNA MER1_type -146 43 1 212 337 5 98 chr6 61167679 61167863 -121247379 - MER5B DNA MER1_type -4 174 8 680 288 146 49 chr6 61168613 61169044 -121246198 - L2 LINE L2 0 3313 2841 280 254 0 30 chr6 61169045 61169108 -121246134 - L2 LINE L2 -962 2352 2292 367 258 199 7 chr6 61169108 61169259 -121245983 - MER5A DNA MER1_type -1 188 9 304 343 134 34 chr6 61173194 61173515 -121241727 - L2 LINE L2 -482 2832 2480 214 213 21 0 chr6 61173880 61173927 -121241315 - L2 LINE L2 -2 3311 3264 613 276 29 11 chr6 61175555 61175729 -121239513 - MIR SINE MIR -15 247 71 369 250 19 29 chr6 61176101 61176205 -121239037 - MER5A DNA MER1_type -51 138 36 198 143 0 0 chr6 61176214 61176249 -121238993 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 274 155 0 0 chr6 61176252 61176319 -121238923 - L1MC3 LINE L1 0 7995 7717 2018 113 6 10 chr6 61276348 61276659 -121138583 - AluSg SINE Alu 0 310 1 305 262 7 28 chr6 61276661 61276802 -121138440 - MER113 DNA MER1_type? -290 231 94 585 364 68 28 chr6 61277294 61277766 -121137476 - L1M4 LINE L1 -3182 2964 2474 236 329 0 0 chr6 61278215 61278297 -121136945 + CT-rich Low_complexity Low_complexity 2 83 0 401 312 101 37 chr6 61278607 61278922 -121136320 - L1 LINE L1 -2854 3292 2849 2083 100 3 7 chr6 61279179 61279478 -121135764 - AluSx SINE Alu -14 298 1 466 261 37 30 chr6 61279619 61279753 -121135489 + MIR SINE MIR 101 235 -27 835 125 62 7 chr6 61279791 61279935 -121135307 + FRAM SINE Alu 18 169 -7 2246 109 0 0 chr6 61279935 61280246 -121134996 + AluSx SINE Alu 1 311 -1 1761 120 4 11 chr6 61280305 61280580 -121134662 + AluSx SINE Alu 40 312 0 192 242 61 0 chr6 61280598 61280664 -121134578 + MIR SINE MIR 137 206 -56 1444 147 117 22 chr6 61280799 61281072 -121134170 + AluSq SINE Alu 1 299 -4 2079 116 3 3 chr6 61281080 61281382 -121133860 + AluSg SINE Alu 1 302 -8 1819 112 3 31 chr6 61281772 61282058 -121133184 - AluSp SINE Alu -13 300 23 1772 94 0 58 chr6 61282058 61282332 -121132910 - AluSg SINE Alu -51 259 1 2170 119 0 0 chr6 61282827 61283129 -121132113 + AluSg SINE Alu 1 302 -8 212 0 36 0 chr6 61283405 61283433 -121131809 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1826 117 0 67 chr6 61283434 61283734 -121131508 - AluSx SINE Alu -32 280 1 379 211 178 70 chr6 61283734 61283919 -121131323 + MIR SINE MIR 40 244 -18 1558 174 0 37 chr6 61283944 61284272 -121130970 - AluJo SINE Alu 0 317 1 621 126 0 118 chr6 61284281 61284310 -121130932 - FLAM_A SINE Alu -177 134 103 2308 80 3 0 chr6 61284310 61284610 -121130632 + AluSc SINE Alu 1 301 -8 621 126 0 118 chr6 61284610 61284715 -121130527 - FLAM_A SINE Alu -208 103 16 421 101 45 11 chr6 61285368 61285457 -121129785 - MER67C LTR ERV1 0 710 619 2313 78 0 3 chr6 61285483 61285779 -121129463 + AluSp SINE Alu 1 295 -18 754 175 8 8 chr6 61285796 61285922 -121129320 - AluJb SINE Alu -185 127 2 1595 151 61 4 chr6 61285937 61286215 -121129027 - AluJo SINE Alu -16 296 3 1991 130 3 3 chr6 61286242 61286541 -121128701 - AluSq SINE Alu -14 299 1 623 189 47 0 chr6 61286541 61286668 -121128574 - MER67C LTR ERV1 -91 619 487 3068 167 81 0 chr6 61286684 61287242 -121128000 - LTR26 LTR ERV1 0 603 1 1167 187 40 53 chr6 61287246 61287323 -121127919 - MER67C LTR ERV1 -207 503 426 2368 69 0 3 chr6 61287323 61287627 -121127615 - AluY SINE Alu -8 303 1 2178 89 3 13 chr6 61287627 61287928 -121127314 - AluSx SINE Alu -13 299 1 1167 187 40 53 chr6 61287928 61288149 -121127093 - MER67C LTR ERV1 -282 428 208 2101 121 10 0 chr6 61288370 61288677 -121126565 - AluSx SINE Alu 0 312 3 351 78 47 0 chr6 61288732 61288796 -121126446 + CT-rich Low_complexity Low_complexity 1 67 0 273 98 0 0 chr6 61288885 61288926 -121126316 + (CA)n Simple_repeat Simple_repeat 2 42 0 1971 113 62 0 chr6 61289707 61289998 -121125244 + AluSx SINE Alu 1 309 -3 233 318 6 51 chr6 61290112 61290288 -121124954 + (TTGGGG)n Simple_repeat Simple_repeat 1 168 0 212 374 32 0 chr6 61291795 61291918 -121123324 - L2 LINE L2 -220 3052 2926 2078 130 0 3 chr6 61292132 61292431 -121122811 + AluSx SINE Alu 1 298 -14 2300 61 17 7 chr6 61292827 61293123 -121122119 + AluSq SINE Alu 1 299 -14 328 327 196 7 chr6 61293464 61293907 -121121335 - L2 LINE L2 -784 2530 2004 1983 97 7 45 chr6 61293919 61294060 -121121182 + AluSx SINE Alu 1 146 -166 2096 74 53 11 chr6 61294060 61294344 -121120898 + AluSg SINE Alu 1 296 -14 1983 97 7 45 chr6 61294344 61294510 -121120732 + AluSx SINE Alu 146 296 -16 275 266 11 0 chr6 61295290 61295384 -121119858 + GA-rich Low_complexity Low_complexity 1 95 0 329 205 0 51 chr6 61295943 61296021 -121119221 - MIR3 SINE MIR -54 154 81 437 277 79 23 chr6 61296338 61296515 -121118727 + L2 LINE L2 3092 3278 -35 * 1385 126 0 0 chr6 61296513 61296713 -121118529 + AluSg/x SINE Alu 105 302 -8 252 250 26 26 chr6 61296733 61296809 -121118433 + MIR SINE MIR 175 250 -12 1055 196 0 0 chr6 61296874 61297042 -121118200 + FAM SINE Alu 1 168 -7 203 185 37 49 chr6 61297078 61297159 -121118083 + (TCTCTG)n Simple_repeat Simple_repeat 3 82 0 * 231 213 16 0 chr6 61297101 61297162 -121118080 + CT-rich Low_complexity Low_complexity 2 63 0 729 171 0 0 chr6 61297506 61297629 -121117613 + FLAM_C SINE Alu 2 124 -9 416 294 14 27 chr6 61297758 61297904 -121117338 + L2 LINE L2 2910 3053 -260 27 0 0 0 chr6 61297927 61297954 -121117288 + AT_rich Low_complexity Low_complexity 1 27 0 1836 135 53 3 chr6 61297958 61298240 -121117002 + AluJb SINE Alu 1 296 -16 401 249 129 81 chr6 61298509 61298726 -121116516 + L1ME2 LINE L1 5811 6050 -114 2190 96 11 0 chr6 61298726 61299029 -121116213 + AluSp SINE Alu 1 306 0 401 249 129 81 chr6 61299029 61299115 -121116127 + L1ME2 LINE L1 6050 6130 -34 2155 75 53 3 chr6 61299116 61299398 -121115844 + AluSc SINE Alu 1 296 -13 1420 166 0 17 chr6 61299470 61299711 -121115531 - AluJb SINE Alu -61 251 15 366 139 35 0 chr6 61299951 61300037 -121115205 + G-rich Low_complexity Low_complexity 3 91 0 4180 250 81 35 chr6 61400244 61401111 -121014131 - L1M4 LINE L1 -1838 4308 3483 2112 96 3 26 chr6 61401111 61401413 -121013829 + AluSp SINE Alu 1 295 -18 4180 250 81 35 chr6 61401413 61401858 -121013384 - L1M4 LINE L1 -2663 3483 3060 541 259 0 8 chr6 61401858 61401989 -121013253 + FLAM_A SINE Alu 2 131 -2 4180 250 81 35 chr6 61401989 61402490 -121012752 - L1M4 LINE L1 -3086 3060 2410 305 81 0 135 chr6 61402505 61402579 -121012663 + L1MB3 LINE L1 6117 6180 -3 198 0 0 0 chr6 61403373 61403395 -121011847 + (A)n Simple_repeat Simple_repeat 1 22 0 186 43 0 0 chr6 61404326 61404349 -121010893 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 310 350 45 38 chr6 61405613 61405770 -121009472 - L2 LINE L2 -4 3268 3111 26 50 0 0 chr6 61405897 61405937 -121009305 + AT_rich Low_complexity Low_complexity 1 40 0 2094 91 0 32 chr6 61406457 61406765 -121008477 + AluY SINE Alu 1 298 -13 192 340 75 9 chr6 61407195 61407301 -121007941 + MIR SINE MIR 86 198 -64 28 0 0 0 chr6 61407598 61407626 -121007616 + AT_rich Low_complexity Low_complexity 1 28 0 567 311 210 5 chr6 61408476 61408900 -121006342 - L2 LINE L2 -2031 1283 773 358 262 104 24 chr6 61408951 61409115 -121006127 + L1ME4a LINE L1 5222 5398 -748 698 274 105 43 chr6 61409126 61409545 -121005697 + L1ME4a LINE L1 5453 5897 -224 282 291 29 0 chr6 61410052 61410155 -121005087 - L1ME LINE L1 -399 5722 5617 2298 104 0 0 chr6 61410271 61410579 -121004663 - AluY SINE Alu -3 308 1 852 313 140 17 chr6 61410649 61411257 -121003985 - L2 LINE L2 -10 3303 2617 490 29 29 0 chr6 61411281 61411349 -121003893 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 754 156 0 33 chr6 61411350 61411472 -121003770 - AluSq/x SINE Alu -188 124 7 1607 293 89 3 chr6 61411476 61412063 -121003179 + L2 LINE L2 1819 2455 -859 241 247 41 41 chr6 61412065 61412138 -121003104 - L2 LINE L2 -1037 2277 2205 22 35 0 0 chr6 61412288 61412317 -121002925 + AT_rich Low_complexity Low_complexity 1 29 0 1479 187 57 49 chr6 61412494 61412900 -121002342 - LTR37A LTR ERV1 0 426 18 1591 276 56 67 chr6 61413325 61414088 -121001154 + MER21B LTR ERV1 1 755 -108 2251 111 0 3 chr6 61416982 61417288 -120997954 - AluSg SINE Alu -5 305 1 987 203 47 91 chr6 61417402 61417787 -120997455 + MER110A LTR ERV1 139 491 0 585 213 124 30 chr6 61419662 61419831 -120995411 - MIR SINE MIR -76 186 2 286 345 210 0 chr6 61419999 61420199 -120995043 + MIR SINE MIR 20 261 -1 428 303 78 23 chr6 61420441 61420659 -120994583 - L2 LINE L2 -458 2856 2627 21 36 0 0 chr6 61421271 61421299 -120993943 + AT_rich Low_complexity Low_complexity 1 28 0 223 333 137 0 chr6 61421573 61421675 -120993567 + MIR SINE MIR 117 232 -30 694 308 39 80 chr6 61423051 61423541 -120991701 - L2 LINE L2 0 3313 2844 1426 122 36 0 chr6 61424485 61424707 -120990535 - MER30 DNA MER1_type 0 230 1 202 294 15 15 chr6 61424728 61424796 -120990446 + MIR SINE MIR 88 155 -107 1766 160 42 8 chr6 61424984 61425341 -120989901 - L1MB7 LINE L1 0 6184 5816 26 0 0 0 chr6 61425776 61425802 -120989440 + AT_rich Low_complexity Low_complexity 1 26 0 733 268 111 7 chr6 61426208 61426623 -120988619 - Charlie2 DNA MER1_type -12 2850 2393 434 269 81 37 chr6 61426674 61426945 -120988297 - Charlie2 DNA MER1_type -565 2297 2015 1363 166 67 20 chr6 61427004 61427257 -120987985 - AluJb SINE Alu -47 265 1 576 213 100 63 chr6 61427398 61427637 -120987605 - Charlie2 DNA MER1_type -2554 308 61 30 27 0 0 chr6 61427788 61427825 -120987417 + AT_rich Low_complexity Low_complexity 1 37 0 375 302 17 9 chr6 61427978 61428094 -120987148 + Charlie7 DNA MER1_type 1487 1603 -1009 2326 25 43 0 chr6 61428248 61428527 -120986715 - AluY SINE Alu -11 300 10 832 297 68 63 chr6 61428529 61429219 -120986023 + L1ME3A LINE L1 5257 5945 -225 700 246 117 99 chr6 61429510 61429898 -120985344 + Charlie7 DNA MER1_type 1602 1981 -631 632 94 10 0 chr6 61429898 61429994 -120985248 + L1PB1 LINE L1 6054 6150 -1 700 246 117 99 chr6 61429994 61430598 -120984644 + Charlie7 DNA MER1_type 1981 2612 0 1986 109 31 24 chr6 61431072 61431366 -120983876 + AluSx SINE Alu 9 304 -8 361 230 118 30 chr6 61431729 61431864 -120983378 - MER103 DNA DNA 0 166 20 2381 58 0 35 chr6 61432790 61433103 -120982139 + AluY SINE Alu 7 308 -3 208 245 0 20 chr6 61433768 61433817 -120981425 + GA-rich Low_complexity Low_complexity 3 50 0 1834 226 69 49 chr6 61435066 61435512 -120979730 - MLT1E2 LTR MaLR 0 626 166 2530 114 11 3 chr6 61435512 61435872 -120979370 - THE1B LTR MaLR 0 364 2 1834 226 69 49 chr6 61435872 61436038 -120979204 - MLT1E2 LTR MaLR -460 166 5 1097 265 179 21 chr6 61436640 61437154 -120978088 + MLT1G1 LTR MaLR 1 595 0 28 48 0 0 chr6 61437231 61437273 -120977969 + AT_rich Low_complexity Low_complexity 1 42 0 327 333 76 0 chr6 61437576 61437720 -120977522 - HAL1 LINE L1 -810 1697 1543 394 323 68 81 chr6 61437744 61438274 -120976968 - HAL1 LINE L1 -1010 1497 975 832 210 20 41 chr6 61438296 61438491 -120976751 + MER20 DNA MER1_type 29 219 0 186 43 0 0 chr6 61438948 61438971 -120976271 + (T)n Simple_repeat Simple_repeat 1 23 0 1473 12 0 0 chr6 61439004 61439173 -120976069 - L1HS LINE L1 0 6155 5987 382 221 57 8 chr6 61439734 61439856 -120975386 - LTR16A1 LTR ERVL 0 457 330 1645 206 63 38 chr6 61439872 61440270 -120974972 + MLT1D LTR MaLR 7 414 -91 2256 109 0 3 chr6 61442368 61442679 -120972563 - AluSx SINE Alu -2 310 1 42849 49 2 1 chr6 61444383 61450528 -120964714 + L1PA4 LINE L1 4 6152 -3 206 325 111 0 chr6 61452172 61452298 -120962944 - MIR SINE MIR 0 262 123 362 339 40 77 chr6 61452313 61452561 -120962681 - L2 LINE L2 -509 2805 2567 513 160 0 0 chr6 61452805 61452911 -120962331 + CT-rich Low_complexity Low_complexity 1 106 0 251 278 14 0 chr6 61452995 61453067 -120962175 - MLT1J LTR MaLR -322 189 117 195 42 0 0 chr6 61453325 61453349 -120961893 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 246 254 27 9 chr6 61453923 61454033 -120961209 - L1ME3A LINE L1 -221 5949 5838 325 268 80 41 chr6 61454218 61454488 -120960754 - L1ME3A LINE L1 -514 5650 5368 377 348 38 22 chr6 61455202 61455386 -120959856 - L3b LINE CR1 -73 1510 1324 435 340 122 8 chr6 61455817 61456055 -120959187 + L2 LINE L2 2180 2444 -870 2081 168 69 5 chr6 61456080 61456473 -120958769 + MSTB LTR MaLR 9 426 0 1157 305 73 8 chr6 61456473 61456965 -120958277 + L2 LINE L2 2477 2997 -316 1066 113 25 0 chr6 61457883 61458042 -120957200 + THE1B LTR MaLR 202 364 0 360 282 80 46 chr6 61458047 61458483 -120956759 - L1MEc LINE L1 -3442 2773 2323 1424 187 33 15 chr6 61458630 61458903 -120956339 - AluJo SINE Alu -34 278 1 824 254 62 5 chr6 61459033 61459242 -120956000 + MER58A DNA MER1_type 1 221 -3 345 256 102 45 chr6 61459486 61459732 -120955510 - L1MEc LINE L1 -4573 1823 1564 495 278 79 72 chr6 61459819 61460363 -120954879 - L1MEc LINE L1 -4979 1226 679 342 0 0 0 chr6 61460622 61460660 -120954582 + (TG)n Simple_repeat Simple_repeat 2 39 0 270 0 0 0 chr6 61460994 61461024 -120954218 + (ATTTG)n Simple_repeat Simple_repeat 2 31 0 2030 131 7 0 chr6 61461024 61461307 -120953935 - AluSq SINE Alu -28 285 1 21 57 0 0 chr6 61462701 61462736 -120952506 + AT_rich Low_complexity Low_complexity 1 35 0 294 73 0 0 chr6 61463149 61463190 -120952052 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 56 0 0 chr6 61465986 61466022 -120949220 + AT_rich Low_complexity Low_complexity 1 36 0 222 37 0 0 chr6 61467962 61467989 -120947253 + (CA)n Simple_repeat Simple_repeat 2 28 0 372 59 0 0 chr6 61467989 61468040 -120947202 + (A)n Simple_repeat Simple_repeat 1 51 0 273 295 78 56 chr6 61469473 61469704 -120945538 + MIR SINE MIR 32 260 -2 1312 277 78 41 chr6 61469826 61470796 -120944446 + L2 LINE L2 2319 3312 -1 27 29 0 0 chr6 61470885 61470919 -120944323 + AT_rich Low_complexity Low_complexity 1 34 0 34 42 0 0 chr6 61471058 61471106 -120944136 + AT_rich Low_complexity Low_complexity 1 48 0 1238 257 75 0 chr6 61471650 61471957 -120943285 - MER58B DNA MER1_type -11 330 1 21 0 0 0 chr6 61471998 61472019 -120943223 + AT_rich Low_complexity Low_complexity 1 21 0 3765 147 30 55 chr6 61472840 61473135 -120942107 + L1MA4 LINE L1 5517 5818 -482 2407 75 3 0 chr6 61473135 61473443 -120941799 + AluY SINE Alu 1 309 -2 3765 147 30 55 chr6 61473443 61473949 -120941293 + L1MA4 LINE L1 5818 6298 -2 26 0 0 0 chr6 61474316 61474342 -120940900 + AT_rich Low_complexity Low_complexity 1 26 0 238 308 75 45 chr6 61474824 61474957 -120940285 + L2 LINE L2 2385 2521 -793 243 326 76 49 chr6 61475374 61475518 -120939724 + L2 LINE L2 2584 2731 -583 733 249 28 52 chr6 61476179 61476392 -120938850 - MIR SINE MIR -1 261 54 185 108 27 0 chr6 61476400 61476437 -120938805 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr6 61476943 61476964 -120938278 + AT_rich Low_complexity Low_complexity 1 21 0 1768 158 85 0 chr6 61477126 61477454 -120937788 + MER47A DNA MER2_type 11 366 0 13997 149 24 6 chr6 61477654 61480017 -120935225 - Tigger1 DNA MER2_type -12 2406 1 186 348 0 56 chr6 61480369 61480458 -120934784 - L2 LINE L2 -1 3271 3188 297 0 0 0 chr6 61482339 61482372 -120932870 + (TG)n Simple_repeat Simple_repeat 2 34 0 234 167 133 17 chr6 61483670 61483730 -120931512 + HSMAR1 DNA Mariner 1221 1287 0 316 265 49 0 chr6 61484094 61484196 -120931046 - MIR SINE MIR -20 242 136 21 0 0 0 chr6 61484236 61484257 -120930985 + AT_rich Low_complexity Low_complexity 1 21 0 207 330 11 44 chr6 61485197 61485288 -120929954 - L3 LINE CR1 -58 1519 1432 21 95 0 0 chr6 61486109 61486172 -120929070 + AT_rich Low_complexity Low_complexity 1 63 0 188 33 0 33 chr6 61487384 61487414 -120927828 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr6 61488951 61488979 -120926263 + AT_rich Low_complexity Low_complexity 1 28 0 912 129 0 0 chr6 61489182 61489314 -120925928 + AluY SINE Alu 1 132 -179 279 0 0 0 chr6 61489314 61489345 -120925897 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1800 123 0 11 chr6 61490451 61490711 -120924531 - AluSx SINE Alu -12 300 44 790 169 19 0 chr6 61490967 61491121 -120924121 + L1MA6 LINE L1 6144 6300 0 216 263 18 0 chr6 61493828 61493885 -120921357 + MIR SINE MIR 199 256 -6 236 357 143 17 chr6 61495161 61495461 -120919781 - L3 LINE CR1 -18 1559 1222 250 221 125 39 chr6 61499150 61499254 -120915988 - L2 LINE L2 -7 3306 3194 183 417 25 12 chr6 61499373 61499536 -120915706 + L2 LINE L2 2803 2967 -347 2464 50 0 10 chr6 61501096 61501399 -120913843 + AluY SINE Alu 2 301 -10 405 280 32 48 chr6 61501804 61501990 -120913252 - MER115 DNA AcHobo -12 681 499 218 282 49 86 chr6 61502022 61502185 -120913057 + L2 LINE L2 2879 3035 -237 201 161 0 0 chr6 61502425 61502456 -120912786 + L2 LINE L2 3270 3300 -13 362 243 23 9 chr6 61502702 61502810 -120912432 - L1ME1 LINE L1 -9 6157 6060 30 27 0 0 chr6 61503727 61503764 -120911478 + AT_rich Low_complexity Low_complexity 1 37 0 2447 34 0 0 chr6 61505344 61505636 -120909606 - L1PA3 LINE L1 -1 6154 5863 2489 66 0 0 chr6 61506448 61506752 -120908490 - AluY SINE Alu 0 311 8 1696 182 40 71 chr6 61506759 61507154 -120908088 - MLT1B LTR MaLR -7 383 1 254 242 32 0 chr6 61508222 61508284 -120906958 + GA-rich Low_complexity Low_complexity 3 66 0 2027 151 136 0 chr6 61508366 61508764 -120906478 + LTR47A LTR ERVL 1 452 0 286 320 183 0 chr6 61509564 61509717 -120905525 - MIR3 SINE MIR -9 199 19 1423 275 139 13 chr6 61509946 61510484 -120904758 + MLT2F LTR ERVL 3 608 -55 3450 247 80 25 chr6 61510526 61511572 -120903670 + ERVL-F LTR ERVL 4340 5443 -321 401 56 0 0 chr6 61511577 61511631 -120903611 + MADE1 DNA Mariner 27 80 0 2131 100 6 34 chr6 61511849 61512169 -120903073 + AluSq SINE Alu 2 312 -1 1345 277 32 93 chr6 61512231 61512918 -120902324 + MLT2F LTR ERVL 1 645 -18 1186 247 92 43 chr6 61512941 61513386 -120901856 + MLT1C LTR MaLR 1 467 0 1092 100 6 0 chr6 61514088 61514248 -120900994 - L1PA8 LINE L1 -11 6161 6001 13667 110 11 1 chr6 61514248 61516723 -120898519 - L1PA8A LINE L1 -433 6173 3643 6274 157 3 8 chr6 61516723 61517767 -120897475 - L1PA8A LINE L1 -4834 1041 3 212 184 20 0 chr6 61518425 61518474 -120896768 + (TA)n Simple_repeat Simple_repeat 2 51 0 428 221 4 163 chr6 61519586 61519841 -120895401 - MER20 DNA MER1_type 0 219 2 298 254 0 0 chr6 61520269 61520336 -120894906 + MIR SINE MIR 185 251 -11 519 113 0 0 chr6 61520482 61520562 -120894680 + (TC)n Simple_repeat Simple_repeat 2 81 0 183 42 0 0 chr6 61521978 61522002 -120893240 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 452 264 87 50 chr6 61522226 61522351 -120892891 - L1ME4a LINE L1 -175 5946 5827 2318 65 7 0 chr6 61522351 61522645 -120892597 + AluY SINE Alu 1 296 -15 452 264 87 50 chr6 61522645 61522818 -120892424 - L1ME4a LINE L1 -294 5827 5637 33 56 0 0 chr6 61522991 61523045 -120892197 + AT_rich Low_complexity Low_complexity 1 54 0 2279 104 0 10 chr6 61523691 61523999 -120891243 + AluSq SINE Alu 1 305 -8 403 305 91 41 chr6 61524686 61525050 -120890192 + L3 LINE CR1 624 1005 -572 264 333 26 39 chr6 61525343 61525499 -120889743 - MIR SINE MIR -91 171 18 198 0 0 0 chr6 61525656 61525678 -120889564 + (TG)n Simple_repeat Simple_repeat 2 23 0 7215 41 0 1 chr6 61525705 61526619 -120888623 + L1PA4 LINE L1 5255 6167 0 27 29 0 0 chr6 61527368 61527402 -120887840 + AT_rich Low_complexity Low_complexity 1 34 0 283 139 0 0 chr6 61527402 61527445 -120887797 + MER103 DNA DNA 77 119 -47 332 275 114 30 chr6 61527574 61527741 -120887501 + L3 LINE CR1 1192 1372 -205 433 121 24 0 chr6 61527755 61527838 -120887404 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 1748 179 3 0 chr6 61529267 61529557 -120885685 - AluJb SINE Alu -17 295 5 321 26 0 0 chr6 61529561 61529599 -120885643 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr6 61530222 61530245 -120884997 + AT_rich Low_complexity Low_complexity 1 23 0 400 175 0 82 chr6 61530247 61530344 -120884898 - AluJo SINE Alu -97 215 127 449 235 27 74 chr6 61530827 61530976 -120884266 - MIR SINE MIR -30 232 91 705 302 50 0 chr6 61531079 61531321 -120883921 + MER46C DNA MER2_type 2 255 -83 26 50 0 0 chr6 61531397 61531437 -120883805 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr6 61531689 61531715 -120883527 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 61534185 61534207 -120881035 + AT_rich Low_complexity Low_complexity 1 22 0 225 227 13 13 chr6 61535524 61535599 -120879643 + (TAAA)n Simple_repeat Simple_repeat 3 77 0 226 371 11 11 chr6 61535662 61535751 -120879491 - MIR SINE MIR -88 120 32 680 249 93 35 chr6 61535929 61536186 -120879056 - MER90 LTR ERV1 -1 613 342 397 305 35 7 chr6 61538025 61538166 -120877076 + L2 LINE L2 3165 3309 -4 2197 278 126 34 chr6 61539567 61540727 -120874515 + HAL1 LINE L1 209 1475 -1032 336 289 78 21 chr6 61540738 61540880 -120874362 + HAL1 LINE L1 1726 1875 -632 1722 183 0 16 chr6 61541675 61541981 -120873261 + AluJo SINE Alu 4 304 -8 1976 135 0 16 chr6 61543642 61543945 -120871297 + AluSq SINE Alu 1 298 -15 426 69 0 0 chr6 61545449 61545507 -120869735 + (CA)n Simple_repeat Simple_repeat 2 59 0 853 192 0 0 chr6 61545896 61546052 -120869190 - AluJb SINE Alu -13 299 144 548 110 0 11 chr6 61546179 61546270 -120868972 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr6 61546333 61546355 -120868887 + AT_rich Low_complexity Low_complexity 1 22 0 7119 108 19 5 chr6 61546355 61547501 -120867741 - L1MA1 LINE L1 0 6302 5141 432 240 20 59 chr6 61547761 61548062 -120867180 - L1ME2 LINE L1 -26 6949 6504 181 83 12 119 chr6 61548068 61548152 -120867090 + (TTTTTA)n Simple_repeat Simple_repeat 2 76 0 1669 175 29 0 chr6 61548176 61548456 -120866786 - AluJo SINE Alu -22 290 3 446 253 65 61 chr6 61548545 61548893 -120866349 - L1ME2 LINE L1 -656 6319 5954 1218 261 93 18 chr6 61548905 61549358 -120865884 - L1ME2 LINE L1 -1663 5294 4808 344 292 86 51 chr6 61549527 61549733 -120865509 - L1ME2 LINE L1 -4695 2262 2065 1795 173 9 24 chr6 61549733 61550074 -120865168 + MER1B DNA MER1_type 2 337 0 344 292 86 51 chr6 61550074 61550298 -120864944 - L1ME2 LINE L1 -4892 2065 1817 1541 191 27 64 chr6 61550316 61550444 -120864798 - MLT1B LTR MaLR 0 390 259 243 0 0 0 chr6 61550444 61550471 -120864771 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1541 191 27 64 chr6 61550471 61550746 -120864496 - MLT1B LTR MaLR -131 259 2 336 24 0 0 chr6 61550746 61550787 -120864455 + (GA)n Simple_repeat Simple_repeat 2 42 0 232 302 58 0 chr6 61550795 61550881 -120864361 - L1ME2 LINE L1 -5335 1524 1434 23 0 0 0 chr6 61553497 61553520 -120861722 + AT_rich Low_complexity Low_complexity 1 23 0 295 239 112 21 chr6 61555598 61555786 -120859456 + MER20B DNA MER1_type 515 719 -64 245 347 42 11 chr6 61555942 61556037 -120859205 - MIR SINE MIR -116 146 49 244 344 38 8 chr6 61556119 61556250 -120858992 - MER20B DNA MER1_type -2 781 647 203 211 70 0 chr6 61557265 61557322 -120857920 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 360 336 10 0 chr6 61557354 61557458 -120857784 + L2 LINE L2 3207 3311 -2 203 217 43 0 chr6 61557550 61557596 -120857646 + MIR3 SINE MIR 155 202 -6 379 307 268 19 chr6 61557662 61557975 -120857267 - L3 LINE CR1 -1 1576 1186 * 852 281 56 84 chr6 61557959 61558558 -120856684 - L2 LINE L2 0 3313 2737 532 356 74 13 chr6 61558556 61558935 -120856307 - L3 LINE CR1 -381 1196 795 * 700 255 56 10 chr6 61558947 61559143 -120856099 + MIR SINE MIR 48 252 -10 655 72 18 27 chr6 61559173 61559284 -120855958 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 327 247 234 51 chr6 61559613 61559771 -120855471 + MIR SINE MIR 4 190 -72 269 67 0 22 chr6 61559949 61559994 -120855248 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 255 214 114 14 chr6 61560463 61560533 -120854709 + HAL1 LINE L1 2431 2507 0 25 0 0 0 chr6 61561003 61561028 -120854214 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr6 61561264 61561285 -120853957 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 61561664 61561687 -120853555 + AT_rich Low_complexity Low_complexity 1 23 0 2024 106 0 7 chr6 61561693 61561977 -120853265 + AluSc SINE Alu 1 282 -27 882 19 0 0 chr6 61561982 61562086 -120853156 + (TAAAA)n Simple_repeat Simple_repeat 3 106 0 339 169 0 0 chr6 61562147 61562218 -120853024 + CT-rich Low_complexity Low_complexity 1 71 0 1686 215 20 3 chr6 61562273 61562631 -120852611 + MER97a DNA MER1_type? 1 364 -530 708 223 40 17 chr6 61562624 61562799 -120852443 - MER97a DNA MER1_type? -322 572 394 * 22 35 0 0 chr6 61562813 61562842 -120852400 + AT_rich Low_complexity Low_complexity 1 29 0 195 204 0 0 chr6 61563317 61563361 -120851881 + (TA)n Simple_repeat Simple_repeat 2 45 0 436 243 62 21 chr6 61563367 61563511 -120851731 + MER97b DNA MER1_type? 901 1050 -3 215 132 38 0 chr6 61564055 61564108 -120851134 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 673 200 0 0 chr6 61564121 61564241 -120851001 + FRAM SINE Alu 40 159 -17 2393 245 67 29 chr6 61564768 61565526 -120849716 - L1ME1 LINE L1 -20 6146 5360 28 61 0 0 chr6 61565650 61565699 -120849543 + AT_rich Low_complexity Low_complexity 1 49 0 437 259 37 19 chr6 61566241 61566403 -120848839 + HsTC2 DNA Tc2 728 892 -1006 2108 130 3 0 chr6 61566573 61566881 -120848361 - AluSq SINE Alu -4 309 1 3387 54 52 17 chr6 61567526 61567988 -120847254 + L1PA8 LINE L1 5691 6168 -4 267 286 157 49 chr6 61568106 61568532 -120846710 + L1ME4a LINE L1 5592 6063 -58 373 224 42 56 chr6 61568667 61568810 -120846432 - MER103 DNA DNA -25 141 1 1482 199 7 0 chr6 61568847 61569123 -120846119 + AluJb SINE Alu 11 288 -24 301 339 63 8 chr6 61570702 61570829 -120844413 + MIR SINE MIR 18 151 -57 269 261 0 15 chr6 61571915 61571980 -120843262 + L2 LINE L2 3209 3272 0 442 332 61 8 chr6 61572175 61572422 -120842820 + MIR SINE MIR 3 262 0 766 186 50 19 chr6 61572481 61572642 -120842600 + Tigger3(Golem) DNA MER2_type 10 175 -2854 * 1429 163 4 8 chr6 61572618 61572864 -120842378 + Tigger3(Golem) DNA MER2_type 2794 3038 0 1293 248 106 10 chr6 61573079 61573483 -120841759 + MSTB2 LTR MaLR 15 457 0 233 188 257 49 chr6 61574370 61574514 -120840728 + L3 LINE CR1 289 462 -1115 293 248 257 0 chr6 61574670 61574771 -120840471 - MIR SINE MIR -108 154 28 607 271 133 64 chr6 61575865 61576352 -120838890 + LTR33 LTR ERVL 1 521 0 983 189 11 0 chr6 61576427 61576602 -120838640 + MER45A DNA AcHobo 2 178 0 550 296 6 3 chr6 61576605 61576776 -120838466 - MIR SINE MIR -65 143 17 23 33 0 0 chr6 61579661 61579691 -120835551 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 61583016 61583052 -120832190 + AT_rich Low_complexity Low_complexity 1 36 0 199 308 220 0 chr6 61587836 61587927 -120827315 + L2 LINE L2 3190 3300 -13 216 0 0 0 chr6 61588342 61588366 -120826876 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 469 218 63 69 chr6 61589165 61589339 -120825903 + MER5B DNA MER1_type 5 177 -1 291 114 0 0 chr6 61590555 61590599 -120824643 + (TAA)n Simple_repeat Simple_repeat 2 45 0 667 254 6 12 chr6 61590606 61590775 -120824467 - FAM SINE Alu -7 168 1 369 247 16 186 chr6 61591682 61591929 -120823313 + MIR SINE MIR 8 212 -50 368 343 53 6 chr6 61592569 61592738 -120822504 + MIR SINE MIR 15 191 -71 615 310 125 4 chr6 61593083 61593315 -120821927 + MIR SINE MIR 2 261 -1 196 318 56 65 chr6 61593327 61593434 -120821808 + L2 LINE L2 3203 3308 -5 24 53 0 0 chr6 61593486 61593524 -120821718 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr6 61594908 61594931 -120820311 + AT_rich Low_complexity Low_complexity 1 23 0 315 307 63 59 chr6 61596080 61596318 -120818924 + L1MEd LINE L1 102 340 -5779 2038 110 7 0 chr6 61596448 61596730 -120818512 + AluSg1 SINE Alu 1 284 -25 435 38 0 0 chr6 61596730 61596783 -120818459 + (CGATA)n Simple_repeat Simple_repeat 3 55 0 572 290 61 75 chr6 61596925 61597366 -120817876 + L1MEd LINE L1 644 1078 -5041 1327 240 37 91 chr6 61597693 61598183 -120817059 + MLT1F1 LTR MaLR 67 529 -38 1119 189 74 74 chr6 61598183 61598548 -120816694 - MLT1A1 LTR MaLR 0 365 1 1327 240 37 91 chr6 61598548 61598574 -120816668 + MLT1F1 LTR MaLR 529 555 -12 242 228 82 134 chr6 61599030 61599201 -120816041 - L2 LINE L2 -3 3310 3149 213 39 0 0 chr6 61599769 61599795 -120815447 + (A)n Simple_repeat Simple_repeat 1 26 0 3403 204 35 11 chr6 61599883 61600679 -120814563 - L1 LINE L1 -749 5397 4583 * 3879 167 33 0 chr6 61600677 61601376 -120813866 + L1MA9 LINE L1 5359 6080 -232 402 196 78 10 chr6 61601381 61601427 -120813815 + L1MA9 LINE L1 6182 6223 -89 180 111 0 0 chr6 61601427 61601454 -120813788 + (TA)n Simple_repeat Simple_repeat 1 27 0 402 196 78 10 chr6 61601454 61601509 -120813733 + L1MA9 LINE L1 6223 6290 -22 25 0 0 0 chr6 61601509 61601534 -120813708 + AT_rich Low_complexity Low_complexity 1 25 0 1694 191 37 57 chr6 61601650 61602052 -120813190 - MLT1C LTR MaLR 0 467 74 216 0 0 0 chr6 61602198 61602222 -120813020 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 349 368 30 6 chr6 61602309 61602475 -120812767 + L2 LINE L2 2872 3041 -231 316 247 11 22 chr6 61602572 61602661 -120812581 - L1MC4 LINE L1 -1339 6703 6616 2291 75 0 0 chr6 61603306 61603651 -120811591 - AluY SINE Alu 0 345 1 751 185 0 0 chr6 61604142 61604261 -120810981 - FLAM_C SINE Alu -20 123 5 299 373 30 30 chr6 61604455 61604656 -120810586 + L2 LINE L2 2196 2396 -918 1526 165 26 88 chr6 61605263 61605651 -120809591 - MLT1A1 LTR MaLR -1 364 1 312 301 68 38 chr6 61605759 61605892 -120809350 + L2 LINE L2 3136 3272 0 197 422 7 7 chr6 61605989 61606124 -120809118 - L2 LINE L2 -450 2864 2730 437 330 78 80 chr6 61606408 61607200 -120808042 - L2 LINE L2 -844 2470 1680 217 373 31 37 chr6 61607569 61607730 -120807512 + L2 LINE L2 2926 3085 -187 2247 112 0 0 chr6 61608090 61608377 -120806865 + AluSc SINE Alu 3 289 -20 204 40 0 0 chr6 61609004 61609029 -120806213 + (TCC)n Simple_repeat Simple_repeat 1 25 0 821 185 63 44 chr6 61609104 61609374 -120805868 - MER33 DNA MER1_type 0 324 50 370 307 132 33 chr6 61609596 61610227 -120805015 - L1M4 LINE L1 -2011 4135 3443 306 309 21 0 chr6 61611068 61611165 -120804077 - MIR SINE MIR -13 249 151 34 0 0 0 chr6 61611216 61611250 -120803992 + AT_rich Low_complexity Low_complexity 1 34 0 273 287 59 0 chr6 61611290 61611391 -120803851 - MIR SINE MIR -154 108 2 21 36 0 0 chr6 61611541 61611569 -120803673 + AT_rich Low_complexity Low_complexity 1 28 0 1434 224 31 36 chr6 61612943 61613301 -120801941 - MLT1A1 LTR MaLR 0 365 10 1138 136 31 11 chr6 61613916 61614107 -120801135 - L1M1 LINE L1 -514 5786 5592 2197 124 30 37 chr6 61614107 61614535 -120800707 + L1MA5 LINE L1 5868 6292 -8 21 57 0 0 chr6 61615123 61615158 -120800084 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr6 61615580 61615606 -120799636 + AT_rich Low_complexity Low_complexity 1 26 0 1919 150 14 0 chr6 61615608 61615902 -120799340 + AluSx SINE Alu 1 298 -14 1560 179 28 6 chr6 61615963 61616287 -120798955 - L1MA4 LINE L1 -1 6299 5969 1735 186 10 10 chr6 61616749 61617061 -120798181 + AluJo SINE Alu 1 312 0 354 248 29 73 chr6 61617119 61617256 -120797986 - L1ME LINE L1 -478 5643 5513 201 325 26 0 chr6 61617342 61617419 -120797823 + L2 LINE L2 2571 2649 -665 1715 133 33 7 chr6 61617433 61617733 -120797509 + Tigger4(Zombi) DNA MER2_type 2424 2731 0 7375 53 12 21 chr6 61618159 61619873 -120795369 - SVA Other Other -645 1386 7 581 270 86 45 chr6 61619967 61620653 -120794589 + L1M4 LINE L1 2384 3097 -3049 1613 171 11 0 chr6 61620675 61620938 -120794304 - AluJb SINE Alu -46 266 1 414 170 132 0 chr6 61620938 61621044 -120794198 - L1P LINE L1 -909 5237 5118 1503 205 3 10 chr6 61621768 61622050 -120793192 + AluJb SINE Alu 1 282 -30 189 0 0 0 chr6 61622050 61622071 -120793171 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1503 205 3 10 chr6 61622071 61622090 -120793152 + AluJb SINE Alu 282 300 -12 206 317 0 0 chr6 61622768 61622828 -120792414 + L2 LINE L2 3237 3296 -17 254 205 12 0 chr6 61623421 61623504 -120791738 + (TA)n Simple_repeat Simple_repeat 2 85 0 280 188 109 119 chr6 61623723 61623824 -120791418 + MER63 DNA MER1_type 1 726 -110 256 111 62 37 chr6 61623824 61623905 -120791337 + (TTATA)n Simple_repeat Simple_repeat 2 84 0 216 243 71 43 chr6 61625517 61625587 -120789655 + L2 LINE L2 3201 3272 0 22 0 0 0 chr6 61627162 61627184 -120788058 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 61627828 61627850 -120787392 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr6 61628876 61628906 -120786336 + (TG)n Simple_repeat Simple_repeat 1 30 0 1699 165 90 9 chr6 61628906 61629228 -120786014 - MER7A DNA MER2_type 0 346 1 2610 39 0 7 chr6 61630230 61630538 -120784704 + AluY SINE Alu 1 306 -5 207 385 0 0 chr6 61630597 61630675 -120784567 + L2 LINE L2 3181 3258 -14 180 337 0 23 chr6 61630840 61630926 -120784316 - L2 LINE L2 -1687 1627 1544 330 290 65 19 chr6 61631295 61631450 -120783792 + L1M LINE L1 5265 5426 -695 860 298 75 27 chr6 61631498 61632227 -120783015 - L1ME4a LINE L1 -11 6110 5347 5717 101 15 14 chr6 61632385 61633262 -120781980 + L1PA13 LINE L1 5289 6163 0 342 175 0 0 chr6 61633342 61633399 -120781843 + L2 LINE L2 3257 3313 0 578 271 86 27 chr6 61633537 61634052 -120781190 - L1P4 LINE L1 -711 5455 4914 390 228 99 19 chr6 61634139 61634301 -120780941 - L1MEd LINE L1 -3195 2934 2760 328 271 31 0 chr6 61634312 61634408 -120780834 - MLT1J2 LTR MaLR -309 141 43 525 318 75 39 chr6 61634473 61634781 -120780461 + L2 LINE L2 2995 3313 0 234 302 0 0 chr6 61635015 61635101 -120780141 - L1MEd LINE L1 -5360 759 674 5643 47 18 6 chr6 61636436 61637143 -120778099 - L1PA8 LINE L1 -5 6167 5452 512 227 81 21 chr6 61637318 61637509 -120777733 + MLT1J1 LTR MaLR 36 235 -215 266 225 25 58 chr6 61638299 61638419 -120776823 - L1MC4 LINE L1 -1306 6736 6621 643 291 236 18 chr6 61638439 61638824 -120776418 + L2 LINE L2 2844 3312 -1 2174 120 10 0 chr6 61638935 61639235 -120776007 - AluSc SINE Alu -6 303 1 188 247 13 52 chr6 61639292 61639369 -120775873 + MIR SINE MIR 134 207 -55 200 214 51 0 chr6 61690172 61690270 -120724972 + (TA)n Simple_repeat Simple_repeat 2 104 0 2228 112 3 0 chr6 61690573 61690876 -120724366 + AluSp SINE Alu 1 304 -9 200 169 0 51 chr6 61691558 61691617 -120723625 + T-rich Low_complexity Low_complexity 3 58 0 * 459 73 0 0 chr6 61691612 61691680 -120723562 + (TC)n Simple_repeat Simple_repeat 1 68 0 2310 144 49 3 chr6 61692329 61692717 -120722525 + MER65A LTR ERV1 40 445 0 375 250 88 0 chr6 61693178 61693258 -120721984 - MER81 DNA DNA -27 87 1 1303 143 37 25 chr6 61693776 61694021 -120721221 - MSTA LTR MaLR 0 428 181 22 35 0 0 chr6 61694629 61694658 -120720584 + AT_rich Low_complexity Low_complexity 1 29 0 297 250 40 30 chr6 61695248 61695348 -120719894 - ERVL LTR ERVL -436 5328 5228 2325 72 3 3 chr6 61695603 61695908 -120719334 - AluY SINE Alu 0 311 7 402 275 44 48 chr6 61698168 61698386 -120716856 + MIR SINE MIR 2 216 -46 183 217 17 50 chr6 61699190 61699250 -120715992 + MIR3 SINE MIR 150 207 -1 240 391 0 0 chr6 61699452 61699539 -120715703 - L2 LINE L2 -50 3222 3136 349 210 34 28 chr6 61699741 61699917 -120715325 + (TA)n Simple_repeat Simple_repeat 1 177 0 641 301 63 25 chr6 61700520 61700836 -120714406 + HsTC2 DNA Tc2 1 328 -1570 * 717 205 16 5 chr6 61700824 61701009 -120714233 + HsTC2 DNA Tc2 1708 1894 -4 267 379 87 19 chr6 61701466 61701627 -120713615 - L2 LINE L2 0 3272 3101 29 0 0 0 chr6 61701876 61701905 -120713337 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 61701971 61701994 -120713248 + AT_rich Low_complexity Low_complexity 1 23 0 295 371 86 21 chr6 61702139 61702325 -120712917 + L2 LINE L2 3075 3272 0 224 258 233 17 chr6 61703109 61703229 -120712013 + L2 LINE L2 3167 3312 -1 236 250 0 14 chr6 61703464 61703536 -120711706 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 4253 197 23 26 chr6 61703581 61705019 -120710223 - L1MB7 LINE L1 -16 6168 4739 1976 138 0 10 chr6 61705019 61705323 -120709919 + AluSx SINE Alu 1 301 -11 4253 197 23 26 chr6 61705323 61705791 -120709451 - L1MB7 LINE L1 -1445 4739 4271 264 336 11 48 chr6 61705831 61706167 -120709075 - L1MC/D LINE L1 -340 5822 5559 2295 67 0 14 chr6 61706221 61706518 -120708724 + AluY SINE Alu 1 293 -18 254 367 70 32 chr6 61707471 61707629 -120707613 - L2 LINE L2 -1 3271 3108 941 145 55 145 chr6 61707905 61708194 -120707048 + MER7A DNA MER2_type 1 261 -85 261 254 0 0 chr6 61708391 61708446 -120706796 + MER7A DNA MER2_type 280 334 -3 374 336 119 20 chr6 61708626 61708921 -120706321 - L1MC/D LINE L1 -2164 5644 5321 21 57 0 0 chr6 61709020 61709055 -120706187 + AT_rich Low_complexity Low_complexity 1 35 0 303 315 176 20 chr6 61709070 61709416 -120705826 - L1MC/D LINE L1 -1013 5133 4734 327 393 7 7 chr6 61710469 61710609 -120704633 + MER115 DNA AcHobo 229 368 -325 225 344 90 49 chr6 61713214 61713458 -120701784 - L2 LINE L2 -2 3270 3017 2061 134 32 32 chr6 61713752 61714125 -120701117 - THE1C LTR MaLR -2 373 1 2374 128 48 0 chr6 61714201 61714615 -120700627 - L1MC3 LINE L1 -9 7776 7343 241 326 73 67 chr6 61714997 61715313 -120699929 + L2 LINE L2 2995 3312 -1 354 278 0 0 chr6 61715795 61715885 -120699357 - L1MC4 LINE L1 -1339 6703 6614 189 147 0 0 chr6 61715888 61715922 -120699320 + (TA)n Simple_repeat Simple_repeat 1 34 0 16655 162 20 29 chr6 61716100 61720285 -120694957 - L1MA3 LINE L1 0 7724 3502 2846 10 0 0 chr6 61720285 61720595 -120694647 - AluY SINE Alu -1 310 1 16655 162 20 29 chr6 61720595 61721501 -120693741 - L1MA3 LINE L1 -4222 3502 2589 1976 147 124 18 chr6 61721501 61721888 -120693354 - MSTA LTR MaLR 0 428 1 16655 162 20 29 chr6 61721888 61721968 -120693274 - L1MA3 LINE L1 -5135 2589 2510 9276 147 10 36 chr6 61721968 61723588 -120691654 - MSTA-int LTR MaLR 0 1580 3 1956 146 131 13 chr6 61723590 61723973 -120691269 - MSTA LTR MaLR 0 428 1 16655 162 20 29 chr6 61723973 61725863 -120689379 - L1MA3 LINE L1 -5215 2509 723 2224 113 0 0 chr6 61725864 61726155 -120689087 - AluSx SINE Alu -13 299 9 676 153 76 0 chr6 61726162 61726280 -120688962 - THE1-int LTR MaLR -1170 410 284 3722 171 6 92 chr6 61726291 61727073 -120688169 - L1MA3 LINE L1 -6831 734 20 1109 351 46 38 chr6 61727711 61728433 -120686809 - L2 LINE L2 -263 3050 2319 1149 196 20 22 chr6 61728772 61729079 -120686163 + L1MD3 LINE L1 7512 7995 0 229 211 0 39 chr6 61729632 61729684 -120685558 - MLT1K LTR MaLR -355 233 184 292 260 61 39 chr6 61729873 61730054 -120685188 + L1ME4a LINE L1 5657 5841 -280 26 0 0 0 chr6 61730158 61730184 -120685058 + AT_rich Low_complexity Low_complexity 1 26 0 246 206 95 40 chr6 61730287 61730413 -120684829 + L1ME4a LINE L1 5985 6117 -4 2330 65 16 10 chr6 61730424 61730733 -120684509 - AluYa5 SINE Alu 0 311 1 26 30 0 0 chr6 61732217 61732250 -120682992 + AT_rich Low_complexity Low_complexity 1 33 0 2146 116 3 7 chr6 61732272 61732566 -120682676 - AluSx SINE Alu -18 294 2 21 0 0 0 chr6 61732619 61732640 -120682602 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 61732990 61733021 -120682221 + AT_rich Low_complexity Low_complexity 1 31 0 1861 287 64 4 chr6 61733219 61733704 -120681538 + MER69 DNA AcHobo 10 523 -2003 354 241 248 0 chr6 61733864 61734005 -120681237 - MIR SINE MIR -5 257 82 311 223 107 18 chr6 61734457 61734569 -120680673 - L1MEd LINE L1 -5960 245 124 639 241 65 25 chr6 61734832 61735031 -120680211 + MLT1J2 LTR MaLR 1 207 -243 361 268 22 58 chr6 61735065 61735126 -120680116 + MLT1J2 LTR MaLR 284 346 -104 2156 145 91 5 chr6 61735126 61735520 -120679722 + MSTA LTR MaLR 1 428 0 361 268 22 58 chr6 61735520 61735596 -120679646 + MLT1J2 LTR MaLR 346 416 -34 190 294 20 98 chr6 61736472 61736501 -120678741 - MIR3 SINE MIR -54 154 124 4168 126 48 13 chr6 61736501 61737208 -120678034 + L1PA15 LINE L1 5434 6165 0 190 294 20 98 chr6 61737208 61737331 -120677911 - MIR3 SINE MIR -84 124 14 3399 151 45 22 chr6 61737768 61738392 -120676850 - L1MA7 LINE L1 -6 6285 5642 2107 152 15 0 chr6 61738392 61738735 -120676507 - MER7A DNA MER2_type 0 346 1 3399 151 45 22 chr6 61738735 61738799 -120676443 - L1MA7 LINE L1 -649 5642 5581 628 240 0 66 chr6 61739093 61739276 -120675966 - L1MEd LINE L1 -6192 204 34 381 338 19 6 chr6 61739556 61739713 -120675529 - MLT1I LTR MaLR -148 261 103 7042 96 15 3 chr6 61739728 61741341 -120673901 - HERVH LTR ERV1 -130 7583 5769 1220 116 21 0 chr6 61741327 61741516 -120673726 - HERVH LTR ERV1 -3033 4680 4488 * 3122 134 14 6 chr6 61741518 61742016 -120673226 - HERVH LTR ERV1 -3720 3993 3492 983 120 7 0 chr6 61742006 61742156 -120673086 - HERVH LTR ERV1 -4423 3290 3140 * 16239 110 22 25 chr6 61742135 61745388 -120669854 - HERVH LTR ERV1 -4718 2995 1 2699 83 125 2 chr6 61745390 61745789 -120669453 - LTR7 LTR ERV1 -2 448 1 47 33 0 0 chr6 61746736 61746797 -120668445 + AT_rich Low_complexity Low_complexity 1 61 0 344 272 79 26 chr6 61746945 61747059 -120668183 - LTR33 LTR ERVL -309 212 93 182 229 0 21 chr6 61747359 61747407 -120667835 + L2 LINE L2 3267 3313 0 219 69 0 0 chr6 61748229 61748258 -120666984 + (TTG)n Simple_repeat Simple_repeat 2 30 0 199 315 37 0 chr6 61748652 61748706 -120666536 + MIR SINE MIR 20 75 -187 267 388 30 12 chr6 61749234 61749399 -120665843 - L2 LINE L2 -423 2891 2724 1583 258 118 28 chr6 61749579 61750121 -120665121 + MLT1E LTR MaLR 1 591 -2 270 175 0 0 chr6 61750604 61750644 -120664598 + Alu SINE Alu 1 40 -262 298 287 109 52 chr6 61751737 61751911 -120663331 - MIR3 SINE MIR -12 196 13 348 325 93 0 chr6 61751917 61752068 -120663174 - MER117 DNA MER1_type -31 166 2 957 279 69 15 chr6 61752777 61753185 -120662057 + MER57B LTR ERV1 1 430 -4 23 33 0 0 chr6 61753416 61753446 -120661796 + AT_rich Low_complexity Low_complexity 1 30 0 580 295 110 48 chr6 61753933 61754392 -120660850 + MLT1J LTR MaLR 3 429 -21 21 0 0 0 chr6 61754416 61754437 -120660805 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr6 61754437 61754465 -120660777 + (TG)n Simple_repeat Simple_repeat 2 29 0 374 280 0 9 chr6 61754738 61754845 -120660397 - LTR67 LTR ERVL -2 555 450 1422 204 71 77 chr6 61755071 61755465 -120659777 - LTR68 LTR ERV1 -278 462 70 351 0 0 0 chr6 61755465 61755504 -120659738 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1422 204 71 77 chr6 61755504 61755574 -120659668 - LTR68 LTR ERV1 -670 70 1 728 292 145 37 chr6 61755659 61756039 -120659203 - LTR16A LTR ERVL -8 442 22 374 266 52 121 chr6 61756158 61756448 -120658794 - ERVL LTR ERVL -1315 4449 4180 315 294 95 59 chr6 61756996 61757146 -120658096 - ERVL LTR ERVL -3101 2663 2501 1932 158 91 37 chr6 61757146 61757552 -120657690 - MSTA LTR MaLR 0 428 1 315 294 95 59 chr6 61757552 61757622 -120657620 - ERVL LTR ERVL -3263 2501 2435 337 288 25 17 chr6 61757811 61757929 -120657313 - ERVL LTR ERVL -3571 2193 2075 21 0 0 0 chr6 61757951 61757972 -120657270 + AT_rich Low_complexity Low_complexity 1 21 0 219 324 122 0 chr6 61758005 61758079 -120657163 - MIR SINE MIR -107 101 19 21 71 0 0 chr6 61758694 61758736 -120656506 + AT_rich Low_complexity Low_complexity 1 42 0 1322 121 10 19 chr6 61759262 61759469 -120655773 + THE1C LTR MaLR 171 375 0 10035 181 92 27 chr6 61759469 61759635 -120655607 - L1MCa LINE L1 -3844 2582 2428 2094 87 0 14 chr6 61759635 61759946 -120655296 + AluY SINE Alu 1 307 0 10035 181 92 27 chr6 61759946 61762183 -120653059 - L1MCa LINE L1 -3998 2428 5 2091 93 4 0 chr6 61763163 61763432 -120651810 + AluSc SINE Alu 29 298 -11 993 39 0 16 chr6 61763432 61763560 -120651682 + L1PA5 LINE L1 6027 6152 -2 189 254 0 0 chr6 61763600 61763671 -120651571 + A-rich Low_complexity Low_complexity 1 71 0 732 177 8 0 chr6 61763715 61763845 -120651397 + AluJo SINE Alu 11 141 -171 24 53 0 0 chr6 61763862 61763900 -120651342 + AT_rich Low_complexity Low_complexity 1 38 0 873 113 7 7 chr6 61764148 61764290 -120650952 + L1PA15 LINE L1 6024 6165 0 489 114 0 13 chr6 61764327 61764406 -120650836 - Charlie1 DNA MER1_type -46 2715 2638 * 1670 237 60 12 chr6 61764405 61764823 -120650419 - Charlie1 DNA MER1_type -1746 1015 578 1203 81 0 0 chr6 61764989 61765149 -120650093 - L1PA10 LINE L1 -257 5911 5752 927 241 141 17 chr6 61765147 61765534 -120649708 - L1ME LINE L1 -489 5673 5239 * 522 345 40 23 chr6 61765568 61765872 -120649370 + L2 LINE L2 2819 3127 -186 22 0 0 0 chr6 61766547 61766569 -120648673 + AT_rich Low_complexity Low_complexity 1 22 0 274 254 79 92 chr6 61766787 61766967 -120648275 + MIR3 SINE MIR 4 175 -63 266 146 0 18 chr6 61767487 61767542 -120647700 + (TC)n Simple_repeat Simple_repeat 1 54 0 2476 137 41 10 chr6 61767678 61768093 -120647149 + MSTA LTR MaLR 1 428 0 247 256 107 0 chr6 61769127 61769248 -120645994 - MER103 DNA DNA -10 156 23 343 335 128 32 chr6 61769515 61769858 -120645384 - MLT1L LTR MaLR -1 614 239 270 286 0 0 chr6 61769934 61770018 -120645224 - MLT1L LTR MaLR -531 84 1 2970 244 115 31 chr6 61770469 61771675 -120643567 + L1ME1 LINE L1 871 1975 -4240 1101 231 0 5 chr6 61771675 61771896 -120643346 + MER58A DNA MER1_type 5 224 0 2970 244 115 31 chr6 61771896 61772593 -120642649 + L1ME1 LINE L1 1975 2612 -3603 2206 141 32 44 chr6 61772593 61773026 -120642216 + MSTC LTR MaLR 1 428 0 2970 244 115 31 chr6 61773026 61773348 -120641894 + L1ME1 LINE L1 2612 3283 -2932 975 218 47 44 chr6 61773349 61773712 -120641530 + L1ME1 LINE L1 4318 4681 -1534 777 220 35 13 chr6 61773736 61773968 -120641274 + L1ME1 LINE L1 5105 5341 -874 * 2317 209 50 21 chr6 61773966 61774532 -120640710 + L1ME1 LINE L1 5650 6231 -4 1590 128 0 128 chr6 61775816 61776161 -120639081 + AluY SINE Alu 1 301 0 300 250 10 31 chr6 61776781 61776877 -120638365 - MIR SINE MIR 0 262 169 183 300 14 57 chr6 61777317 61777387 -120637855 + MIR SINE MIR 19 85 -177 216 298 161 16 chr6 61779158 61779282 -120635960 + MIR SINE MIR 31 172 -90 254 336 67 20 chr6 61780344 61780418 -120634824 + L2 LINE L2 2591 2660 -654 1631 159 26 46 chr6 61780418 61780764 -120634478 + MER44D DNA MER2_type 1 609 0 254 336 67 20 chr6 61780764 61780838 -120634404 + L2 LINE L2 2660 2746 -568 423 187 27 23 chr6 61781010 61781108 -120634134 + MER5B DNA MER1_type 76 162 -16 2135 121 13 3 chr6 61781421 61781735 -120633507 - L1PA13 LINE L1 -349 5814 5498 2343 80 12 21 chr6 61781735 61782071 -120633171 + L1PA13 LINE L1 5824 6156 -7 495 0 0 0 chr6 61782865 61782920 -120632322 + (TG)n Simple_repeat Simple_repeat 1 55 0 2145 124 0 13 chr6 61783317 61783623 -120631619 + AluSx SINE Alu 1 302 -10 2058 117 13 0 chr6 61783623 61783922 -120631320 + AluSp SINE Alu 1 303 -10 494 320 44 17 chr6 61784002 61784183 -120631059 - MIR SINE MIR -70 192 7 807 270 77 24 chr6 61784538 61784966 -120630276 - MLT1B LTR MaLR 0 390 1 207 238 30 89 chr6 61787535 61787636 -120627606 - MIR SINE MIR -2 260 166 533 263 12 19 chr6 61787647 61787807 -120627435 - MIR SINE MIR 0 262 104 23 0 0 0 chr6 61789272 61789295 -120625947 + AT_rich Low_complexity Low_complexity 1 23 0 234 261 29 0 chr6 61789318 61789387 -120625855 + L1ME LINE L1 5595 5665 -456 205 302 58 12 chr6 61790301 61790387 -120624855 - L2 LINE L2 -60 3253 3164 22 0 0 0 chr6 61790873 61790895 -120624347 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 61790975 61791012 -120624230 + AT_rich Low_complexity Low_complexity 1 37 0 32 0 0 0 chr6 61794021 61794053 -120621189 + AT_rich Low_complexity Low_complexity 1 32 0 229 364 15 0 chr6 61794141 61794207 -120621035 - L2 LINE L2 0 3313 3247 227 252 142 79 chr6 61794873 61795000 -120620242 - L2 LINE L2 -649 2665 2531 470 259 15 22 chr6 61795019 61795154 -120620088 - L2 LINE L2 -914 2400 2267 329 195 0 13 chr6 61795956 61796033 -120619209 + (TATG)n Simple_repeat Simple_repeat 3 78 0 279 272 117 10 chr6 61796829 61796932 -120618310 - MIR3 SINE MIR -11 197 84 26 30 0 0 chr6 61798534 61798567 -120616675 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr6 61798685 61798706 -120616536 + AT_rich Low_complexity Low_complexity 1 21 0 244 301 54 0 chr6 61798707 61798873 -120616369 - L1ME LINE L1 -268 5853 5679 253 250 90 10 chr6 61800494 61800594 -120614648 + L3 LINE CR1 267 374 -1203 22 0 0 0 chr6 61800788 61800810 -120614432 + AT_rich Low_complexity Low_complexity 1 22 0 3522 90 33 13 chr6 61800812 61801333 -120613909 - L1PA10 LINE L1 -7 6161 5631 895 233 31 36 chr6 61801566 61801789 -120613453 + MER58A DNA MER1_type 2 223 -1 22 0 0 0 chr6 61801802 61801824 -120613418 + AT_rich Low_complexity Low_complexity 1 22 0 266 340 10 0 chr6 61801842 61801942 -120613300 + L3 LINE CR1 804 904 -673 340 238 0 76 chr6 61802061 61802166 -120613076 + L3 LINE CR1 920 1016 -561 25 0 0 0 chr6 61804140 61804165 -120611077 + AT_rich Low_complexity Low_complexity 1 25 0 719 284 61 58 chr6 61805416 61806218 -120609024 + L1MEd LINE L1 783 1622 -868 21 36 0 0 chr6 61806409 61806437 -120608805 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 61806985 61807007 -120608235 + AT_rich Low_complexity Low_complexity 1 22 0 3084 264 69 25 chr6 61858918 61860166 -120555076 + L1M4 LINE L1 3279 4581 -1565 393 245 0 32 chr6 61860172 61860266 -120554976 + MLT1F1 LTR MaLR 35 125 -442 2383 217 20 18 chr6 61860281 61860835 -120554407 + L1MD3 LINE L1 7432 7986 -9 2152 127 0 29 chr6 61860835 61861150 -120554092 + AluSq SINE Alu 1 306 -7 1133 269 36 10 chr6 61861159 61861549 -120553693 + L1M4 LINE L1 4603 5002 -1144 19817 164 22 30 chr6 61861550 61861924 -120553318 + L1MA1 LINE L1 13 388 -7333 2397 90 3 0 chr6 61861924 61862236 -120553006 - AluSp SINE Alu 0 313 1 19817 164 22 30 chr6 61862236 61863724 -120551518 + L1MA1 LINE L1 388 1886 -5835 7133 14 39 0 chr6 61863724 61864556 -120550686 + L1PA2 LINE L1 5275 6155 0 19817 164 22 30 chr6 61864556 61869764 -120545478 + L1MA1 LINE L1 1886 7028 -693 2132 108 10 13 chr6 61869764 61870070 -120545172 + AluSq SINE Alu 6 310 -3 19817 164 22 30 chr6 61870070 61870464 -120544778 + L1MA1 LINE L1 7028 7424 -297 1304 173 4 0 chr6 61870462 61870699 -120544543 + L1MC1 LINE L1 5825 6062 -271 * 180 111 0 0 chr6 61870710 61870737 -120544505 + (CATATA)n Simple_repeat Simple_repeat 1 27 0 378 250 0 22 chr6 61870737 61870829 -120544413 - L1MC4 LINE L1 -1339 6703 6614 905 208 79 29 chr6 61870832 61871072 -120544170 + L1MC1 LINE L1 6080 6331 -2 667 201 54 49 chr6 61871564 61871748 -120543494 + MER5A DNA MER1_type 2 186 -3 443 19 0 0 chr6 61871900 61871953 -120543289 - MADE1 DNA Mariner 0 80 28 867 202 27 0 chr6 61872218 61872401 -120542841 - MER5A DNA MER1_type 0 189 2 195 327 146 27 chr6 61873600 61873796 -120541446 + MIR SINE MIR 18 230 -32 372 242 85 42 chr6 61874106 61874271 -120540971 + MIR SINE MIR 78 249 -13 263 341 175 47 chr6 61874288 61874824 -120540418 + L2 LINE L2 982 1586 -1728 199 315 41 0 chr6 61874835 61874908 -120540334 + L2 LINE L2 2268 2343 -971 2505 38 0 3 chr6 61875251 61875544 -120539698 - AluY SINE Alu -19 292 1 318 259 116 60 chr6 61876010 61876226 -120539016 + HAL1b LINE L1 373 600 -748 22 0 0 0 chr6 61876344 61876366 -120538876 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 61876562 61876583 -120538659 + AT_rich Low_complexity Low_complexity 1 21 0 1417 311 87 30 chr6 61876700 61877708 -120537534 + L1M4 LINE L1 2111 3176 -2970 1467 180 36 74 chr6 61878001 61878273 -120536969 + L1MB8 LINE L1 5778 6030 -148 1456 93 0 10 chr6 61878273 61878478 -120536764 - AluY SINE Alu -7 304 102 1467 180 36 74 chr6 61878478 61878622 -120536620 + L1MB8 LINE L1 6030 6178 0 272 281 198 16 chr6 61878738 61878930 -120536312 - MIR SINE MIR -15 247 21 194 383 0 75 chr6 61879042 61879136 -120536106 + L2 LINE L2 3134 3220 -52 21 0 0 0 chr6 61880005 61880026 -120535216 + AT_rich Low_complexity Low_complexity 1 21 0 2341 56 0 14 chr6 61880591 61880910 -120534332 - AluY SINE Alu 0 315 1 2421 79 0 0 chr6 61880977 61881281 -120533961 - AluSg SINE Alu -6 304 1 21 100 0 0 chr6 61881951 61882021 -120533221 + AT_rich Low_complexity Low_complexity 1 70 0 530 254 109 50 chr6 61883042 61883380 -120531862 - HAL1 LINE L1 -205 2302 1945 519 268 136 20 chr6 61883454 61883704 -120531538 - HAL1 LINE L1 -768 1739 1461 535 332 26 30 chr6 61883955 61884187 -120531055 - MER115 DNA AcHobo -298 395 165 1125 266 182 36 chr6 61884309 61884678 -120530564 - HAL1 LINE L1 -1520 987 673 2162 122 3 0 chr6 61884678 61884982 -120530260 - AluSq SINE Alu -8 305 1 1125 266 182 36 chr6 61884982 61885248 -120529994 - HAL1 LINE L1 -1834 673 259 252 86 0 0 chr6 61885695 61885730 -120529512 + (TG)n Simple_repeat Simple_repeat 1 35 0 195 170 0 0 chr6 61885730 61885777 -120529465 + GA-rich Low_complexity Low_complexity 2 48 0 201 39 0 0 chr6 61885978 61886004 -120529238 + (TG)n Simple_repeat Simple_repeat 2 27 0 252 0 0 0 chr6 61886189 61886217 -120529025 + (TA)n Simple_repeat Simple_repeat 1 28 0 40 59 0 0 chr6 61886229 61886297 -120528945 + AT_rich Low_complexity Low_complexity 1 68 0 305 295 93 50 chr6 61886921 61887060 -120528182 + MLT1I LTR MaLR 265 409 0 40 59 0 0 chr6 61888064 61888132 -120527110 + AT_rich Low_complexity Low_complexity 1 68 0 299 349 32 11 chr6 61888273 61888554 -120526688 + L1MC/D LINE L1 4550 4836 -1310 2370 119 5 19 chr6 61888663 61889032 -120526210 + THE1B LTR MaLR 1 364 0 11415 106 10 0 chr6 61889034 61890596 -120524646 + THE1B-int LTR MaLR 4 1580 0 2130 111 18 80 chr6 61890596 61890984 -120524258 + THE1B LTR MaLR 1 364 0 28 29 0 0 chr6 61891025 61891060 -120524182 + AT_rich Low_complexity Low_complexity 1 35 0 313 277 115 64 chr6 61891291 61891681 -120523561 + L1MC/D LINE L1 5309 5718 -2090 21 0 0 0 chr6 61891684 61891705 -120523537 + AT_rich Low_complexity Low_complexity 1 21 0 547 294 93 5 chr6 61892109 61892323 -120522919 + MLT1I LTR MaLR 167 399 -10 235 343 48 0 chr6 61893055 61893175 -120522067 + MIR SINE MIR 19 150 -62 207 114 0 0 chr6 61893394 61893429 -120521813 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 486 88 0 0 chr6 61894049 61894117 -120521125 - MADE1 DNA Mariner -12 68 1 235 180 20 0 chr6 61894315 61894365 -120520877 + (TA)n Simple_repeat Simple_repeat 1 51 0 1374 294 79 43 chr6 61894399 61895123 -120520119 - L2 LINE L2 -1152 2162 1413 358 300 0 0 chr6 61895280 61895380 -120519862 - MIR SINE MIR -59 203 104 207 232 0 0 chr6 61895465 61895521 -120519721 + (CA)n Simple_repeat Simple_repeat 1 56 0 21 36 0 0 chr6 61896154 61896182 -120519060 + AT_rich Low_complexity Low_complexity 1 28 0 1904 107 14 3 chr6 61897103 61897392 -120517850 + L1MA6 LINE L1 5650 5941 -359 22 35 0 0 chr6 61897892 61897921 -120517321 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 61897994 61898024 -120517218 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr6 61898195 61898241 -120517001 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr6 61898398 61898426 -120516816 + AT_rich Low_complexity Low_complexity 1 28 0 2439 92 0 0 chr6 61899198 61899504 -120515738 - AluY SINE Alu -5 306 1 262 350 34 60 chr6 61899725 61899842 -120515400 + L2 LINE L2 3121 3234 -38 196 298 18 18 chr6 61900093 61900150 -120515092 + MIR SINE MIR 30 86 -176 * 648 199 51 19 chr6 61900135 61900291 -120514951 - MIR SINE MIR -41 221 61 237 364 117 8 chr6 61900784 61901015 -120514227 + MIR3 SINE MIR 3 256 -6 484 219 62 120 chr6 61903229 61903471 -120511771 + L2 LINE L2 3084 3311 -2 208 188 47 16 chr6 61903652 61903716 -120511526 + (TA)n Simple_repeat Simple_repeat 1 66 0 372 380 127 8 chr6 61903945 61904190 -120511052 - L3 LINE CR1 -354 1223 950 300 27 0 0 chr6 61904338 61904375 -120510867 + (GA)n Simple_repeat Simple_repeat 2 38 0 418 303 56 28 chr6 61904422 61904600 -120510642 - L3b LINE CR1 -277 1306 1124 310 389 127 8 chr6 61904810 61905054 -120510188 - L3 LINE CR1 -354 1223 951 193 301 72 12 chr6 61905100 61905183 -120510059 - L3 LINE CR1 -746 831 744 1387 270 116 18 chr6 61905518 61906070 -120509172 + L2 LINE L2 2255 2860 -454 2268 58 4 0 chr6 61906243 61906520 -120508722 + AluY SINE Alu 1 278 -33 450 0 0 0 chr6 61906520 61906570 -120508672 + (CA)n Simple_repeat Simple_repeat 1 50 0 373 301 18 18 chr6 61906747 61906860 -120508382 - MIR3 SINE MIR -3 205 93 2404 73 0 10 chr6 61906947 61907260 -120507982 + AluY SINE Alu 1 310 -1 2205 181 102 2 chr6 61908012 61908471 -120506771 - MLT1D LTR MaLR 0 505 1 1794 308 152 16 chr6 61909196 61910011 -120505231 + L2 LINE L2 1392 2427 -887 1182 229 108 40 chr6 61910011 61910382 -120504860 + MSTD LTR MaLR 1 396 0 1794 308 152 16 chr6 61910382 61910780 -120504462 + L2 LINE L2 2427 2770 -544 1989 92 37 3 chr6 61910922 61911216 -120504026 - L1PA13 LINE L1 -1 6162 5859 1634 167 38 24 chr6 61911615 61911908 -120503334 - AluSx SINE Alu -15 297 1 1814 178 44 137 chr6 61912283 61912846 -120502396 + MER67D LTR ERV1 4 514 0 1976 140 34 0 chr6 61913313 61913606 -120501636 - AluSx SINE Alu -9 303 1 22 56 0 0 chr6 61914085 61914121 -120501121 + AT_rich Low_complexity Low_complexity 1 36 0 2023 159 3 0 chr6 61914266 61914574 -120500668 - AluJb SINE Alu 0 312 4 2116 135 0 0 chr6 61915340 61915636 -120499606 - AluSg SINE Alu -14 296 1 180 0 0 0 chr6 61915640 61915660 -120499582 + (T)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr6 61915875 61915903 -120499339 + AT_rich Low_complexity Low_complexity 1 28 0 1000 270 39 0 chr6 61916221 61916454 -120498788 - MIR SINE MIR -9 253 12 2209 72 7 3 chr6 61919435 61919727 -120495515 + AluSc SINE Alu 2 294 -15 27 29 0 0 chr6 61920851 61920885 -120494357 + AT_rich Low_complexity Low_complexity 1 34 0 360 0 0 0 chr6 61921907 61921947 -120493295 + (CA)n Simple_repeat Simple_repeat 2 41 0 205 148 37 37 chr6 61922206 61922260 -120492982 + (TTATA)n Simple_repeat Simple_repeat 4 57 0 2036 96 4 0 chr6 61922373 61922645 -120492597 + AluSq SINE Alu 5 277 -36 186 71 0 0 chr6 61922645 61922673 -120492569 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 248 323 114 59 chr6 61924548 61925037 -120490205 + L2 LINE L2 1888 2403 -911 326 353 69 25 chr6 61926228 61926437 -120488805 + MIR SINE MIR 2 218 -44 3747 252 108 14 chr6 61927853 61929153 -120486089 + L1MB1 LINE L1 1056 2477 -3907 1083 139 0 120 chr6 61929153 61929369 -120485873 + AluJb SINE Alu 85 274 -38 343 172 58 0 chr6 61929370 61929457 -120485785 + GA-rich Low_complexity Low_complexity 4 95 0 12572 201 50 13 chr6 61929468 61932650 -120482592 + L1MB1 LINE L1 2470 5760 -743 231 167 0 0 chr6 61932653 61932695 -120482547 + GA-rich Low_complexity Low_complexity 4 45 0 649 150 42 8 chr6 61932695 61932815 -120482427 + L1MB1 LINE L1 6267 6390 -14 495 145 0 65 chr6 61932855 61933041 -120482201 + (GGA)n Simple_repeat Simple_repeat 1 174 0 474 137 0 0 chr6 61933041 61933136 -120482106 + (TAG)n Simple_repeat Simple_repeat 2 96 0 2393 50 10 7 chr6 61933513 61933813 -120481429 + AluY SINE Alu 3 303 -8 279 292 39 0 chr6 61934907 61935037 -120480205 + L1ME4a LINE L1 5649 5783 -338 262 226 190 36 chr6 61935178 61935315 -120479927 + L1ME4a LINE L1 5964 6121 0 349 283 99 7 chr6 61936916 61937068 -120478174 + L2 LINE L2 2918 3083 -189 220 344 49 35 chr6 61937706 61937887 -120477355 + MIR3 SINE MIR 7 188 -74 23 33 0 0 chr6 61937908 61937938 -120477304 + AT_rich Low_complexity Low_complexity 1 30 0 258 262 0 0 chr6 61938166 61938227 -120477015 - MIR SINE MIR -40 222 162 369 270 65 30 chr6 61939196 61939396 -120475846 + L1ME LINE L1 -492 4294967010 -6194 704 276 103 39 chr6 61939668 61940329 -120474913 + L1ME LINE L1 926 1720 -4887 4923 225 93 82 chr6 61940331 61941426 -120473816 + L1ME LINE L1 2668 3749 -2695 2830 7 0 0 chr6 61941426 61941734 -120473508 - AluYb8 SINE Alu -10 308 1 4923 225 93 82 chr6 61941734 61943009 -120472233 + L1ME LINE L1 3749 5094 -1350 1888 172 47 40 chr6 61943009 61943434 -120471808 - MSTC LTR MaLR 0 428 1 4923 225 93 82 chr6 61943434 61944444 -120470798 + L1ME LINE L1 5094 6091 -353 10674 228 43 82 chr6 61944448 61946011 -120469231 + L1MA9 LINE L1 714 2336 -4291 14781 91 32 0 chr6 61946011 61947324 -120467918 + L1PA7 LINE L1 3060 4329 -1825 1814 120 3 28 chr6 61947324 61947608 -120467634 + AluSg SINE Alu 21 297 -13 14781 91 32 0 chr6 61947608 61949322 -120465920 + L1PA7 LINE L1 4329 6153 -1 10674 228 43 82 chr6 61949322 61949752 -120465490 + L1MA9 LINE L1 2336 2781 -3846 1953 109 63 0 chr6 61949752 61950036 -120465206 - AluSc SINE Alu -7 302 1 10674 228 43 82 chr6 61950036 61950812 -120464430 + L1MA9 LINE L1 2781 3586 -3041 2579 143 24 19 chr6 61950812 61951237 -120464005 + MSTC LTR MaLR 2 428 0 10674 228 43 82 chr6 61951237 61954518 -120460724 + L1MA9 LINE L1 3586 6622 -5 238 319 81 21 chr6 61955435 61955645 -120459597 + MIR3 SINE MIR 41 215 -2 926 296 152 19 chr6 61955781 61956304 -120458938 - L2 LINE L2 -3 3310 2713 7491 27 0 0 chr6 61956305 61957628 -120457614 - L1PA4 LINE L1 -3 6152 4830 213 315 76 0 chr6 61957675 61957767 -120457475 + MIR SINE MIR 163 261 -1 426 216 99 37 chr6 61958120 61958282 -120456960 + MER69 DNA AcHobo 2168 2339 -187 274 339 24 31 chr6 61958382 61958509 -120456733 + L2 LINE L2 3139 3264 -8 771 260 41 9 chr6 61959427 61959658 -120455584 + L1MC5 LINE L1 6669 6908 -900 28977 118 13 71 chr6 61959671 61962681 -120452561 + L1P LINE L1 9 2567 -3579 372 71 0 0 chr6 61962681 61962737 -120452505 + (TA)n Simple_repeat Simple_repeat 2 57 0 28977 118 13 71 chr6 61962737 61965108 -120450134 + L1P LINE L1 2567 5075 -1071 6610 68 27 0 chr6 61965108 61966268 -120448974 + L1PA7 LINE L1 4970 6154 0 344 155 17 0 chr6 61966472 61966530 -120448712 + L1MC5 LINE L1 7173 7231 -730 352 226 113 0 chr6 61966691 61966806 -120448436 + L1MC5 LINE L1 7292 7419 -542 246 216 97 75 chr6 61966847 61966981 -120448261 + L1MC5 LINE L1 7508 7644 -317 29 47 0 0 chr6 61967083 61967126 -120448116 + AT_rich Low_complexity Low_complexity 1 43 0 582 114 0 0 chr6 61967163 61967251 -120447991 + (TA)n Simple_repeat Simple_repeat 1 88 0 278 200 40 13 chr6 61967251 61967326 -120447916 + L1M4 LINE L1 5194 5270 -876 182 256 193 108 chr6 61968929 61969105 -120446137 + MIR3 SINE MIR 16 206 -2 301 223 98 27 chr6 61969482 61969594 -120445648 + MIR SINE MIR 92 211 -51 275 152 22 0 chr6 61969766 61969812 -120445430 - L2 LINE L2 -2 3311 3265 348 283 28 44 chr6 61971557 61971737 -120443505 + MIR SINE MIR 73 249 -13 329 374 58 12 chr6 61973512 61973683 -120441559 - MIR3 SINE MIR -27 181 3 7454 105 9 26 chr6 61974483 61975559 -120439683 + HSMAR1 DNA Mariner 2 1059 -228 21 0 0 0 chr6 61975564 61975585 -120439657 + AT_rich Low_complexity Low_complexity 1 21 0 209 289 13 13 chr6 61976137 61976213 -120439029 + MIR SINE MIR 183 258 -4 369 320 10 0 chr6 61976620 61976717 -120438525 - L3 LINE CR1 -112 1465 1368 423 243 83 24 chr6 61976729 61976898 -120438344 - MIR SINE MIR 0 262 84 680 232 111 5 chr6 61977062 61977260 -120437982 - MER20 DNA MER1_type 0 219 1 1426 229 27 7 chr6 61977440 61977733 -120437509 + AluJo SINE Alu 1 299 -13 2411 88 0 0 chr6 61977990 61978284 -120436958 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr6 61979232 61979253 -120435989 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 61979632 61979664 -120435578 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 61979854 61979875 -120435367 + AT_rich Low_complexity Low_complexity 1 21 0 1353 256 101 22 chr6 61979927 61980334 -120434908 + LTR40a LTR ERVL 81 519 0 21 71 0 0 chr6 61981694 61981736 -120433506 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr6 61982458 61982486 -120432756 + AT_rich Low_complexity Low_complexity 1 28 0 261 374 86 11 chr6 61982749 61982936 -120432306 + L3b LINE CR1 1294 1494 -89 253 279 78 34 chr6 61983650 61983829 -120431413 - L2 LINE L2 0 3313 3127 184 360 156 19 chr6 61984053 61984464 -120430778 - L2 LINE L2 -444 2870 2404 390 277 66 18 chr6 61984796 61984962 -120430280 + L1ME4a LINE L1 5731 5904 -217 1339 179 80 33 chr6 61985098 61985372 -120429870 + AluJo SINE Alu 1 287 -25 580 300 103 15 chr6 61985516 61985789 -120429453 - MLT1I LTR MaLR -15 394 98 705 241 85 17 chr6 61985921 61986157 -120429085 - MER112 DNA MER1_type -7 253 2 252 339 18 48 chr6 61987437 61987602 -120427640 + MIR3 SINE MIR 44 203 -5 441 309 128 49 chr6 61989436 61989906 -120425336 + HAL1 LINE L1 1036 1542 -965 371 341 89 29 chr6 61990022 61990403 -120424839 + L1MEc LINE L1 2120 2523 -3873 191 286 71 0 chr6 61990631 61990701 -120424541 + L2 LINE L2 1853 1927 -1387 195 324 70 0 chr6 61991497 61991568 -120423674 + L3 LINE CR1 340 415 -1162 672 340 209 9 chr6 61991655 61992390 -120422852 + L3 LINE CR1 575 1456 -121 295 276 143 0 chr6 61994234 61994332 -120420910 + L2 LINE L2 3202 3313 0 198 0 0 0 chr6 61994430 61994452 -120420790 + (A)n Simple_repeat Simple_repeat 1 22 0 503 310 20 25 chr6 61994862 61995062 -120420180 - MIR SINE MIR -1 261 63 262 162 189 36 chr6 61995369 61995480 -120419762 - L1ME4a LINE L1 -5 6116 5989 22 0 0 0 chr6 61995596 61995618 -120419624 + AT_rich Low_complexity Low_complexity 1 22 0 1343 133 52 86 chr6 61995746 61995870 -120419372 + MLT1A1 LTR MaLR 1 128 -300 1908 153 38 41 chr6 61995870 61996235 -120419007 + THE1B LTR MaLR 1 364 0 1343 133 52 86 chr6 61996235 61996496 -120418746 + MLT1A1 LTR MaLR 128 428 0 1122 252 77 17 chr6 61997094 61997447 -120417795 + MLT1A2 LTR MaLR 1 374 0 239 300 29 0 chr6 61997974 61998044 -120417198 + L2 LINE L2 3241 3312 -1 24 0 0 0 chr6 61998204 61998228 -120417014 + AT_rich Low_complexity Low_complexity 1 24 0 196 355 116 48 chr6 61998950 61999139 -120416103 + MIR3 SINE MIR 4 205 -3 188 157 39 78 chr6 61999253 61999304 -120415938 - MER5B DNA MER1_type -129 49 1 274 246 31 0 chr6 61999312 61999377 -120415865 + MER5A DNA MER1_type 1 67 -122 1223 195 19 31 chr6 61999578 61999835 -120415407 - MIR SINE MIR 0 262 9 26 101 0 0 chr6 62000501 62000590 -120414652 + AT_rich Low_complexity Low_complexity 1 89 0 630 229 73 49 chr6 62001573 62001778 -120413464 - MIR SINE MIR -42 220 11 666 218 31 52 chr6 62002601 62002794 -120412448 - MER5A DNA MER1_type 0 189 1 639 203 37 37 chr6 62002817 62002980 -120412262 - MER5B DNA MER1_type -15 163 1 682 262 148 60 chr6 62004203 62004657 -120410585 + L2 LINE L2 2817 3310 -3 3514 185 73 22 chr6 62004798 62005884 -120409358 + L1MB7 LINE L1 5034 6163 -21 322 192 26 0 chr6 62005889 62005967 -120409275 + L1MB7 LINE L1 6105 6184 0 1987 210 50 48 chr6 62006222 62006761 -120408481 + MLT1E3 LTR MaLR 85 624 0 186 319 0 0 chr6 62007491 62007538 -120407704 - L2 LINE L2 -38 3275 3229 21 0 0 0 chr6 62008446 62008467 -120406775 + AT_rich Low_complexity Low_complexity 1 21 0 263 278 0 67 chr6 62008753 62008843 -120406399 - MLT1K LTR MaLR -496 92 9 801 262 128 33 chr6 62009314 62009681 -120405561 + MLT1K LTR MaLR 179 580 -8 200 311 57 9 chr6 62010685 62010791 -120404451 - L3b LINE CR1 -362 1221 1111 249 259 0 0 chr6 62011092 62011150 -120404092 + MIR3 SINE MIR 130 187 -21 360 0 0 0 chr6 62011336 62011376 -120403866 + (TG)n Simple_repeat Simple_repeat 2 41 0 28 0 0 0 chr6 62012687 62012715 -120402527 + AT_rich Low_complexity Low_complexity 1 28 0 575 262 18 0 chr6 62013295 62013463 -120401779 + L1ME4a LINE L1 5522 5692 -429 1251 203 72 0 chr6 62013571 62013862 -120401380 - MER58B DNA MER1_type 0 341 30 24 32 0 0 chr6 62013873 62013904 -120401338 + AT_rich Low_complexity Low_complexity 1 31 0 318 231 46 46 chr6 62013970 62014078 -120401164 + L1ME4a LINE L1 6008 6115 -6 24 0 0 0 chr6 62014731 62014755 -120400487 + AT_rich Low_complexity Low_complexity 1 24 0 389 242 38 8 chr6 62014910 62015042 -120400200 - MER103 DNA DNA -19 147 12 1959 141 40 0 chr6 62016304 62016602 -120398640 + AluSx SINE Alu 1 310 -2 843 78 0 0 chr6 62016628 62016757 -120398485 + (GGAA)n Simple_repeat Simple_repeat 4 132 0 384 22 0 0 chr6 62016851 62016896 -120398346 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 311 11 11 chr6 62017106 62017196 -120398046 + L2 LINE L2 2799 2888 -426 313 207 0 46 chr6 62017199 62017286 -120397956 - MER96 DNA MER1_type? -92 83 1 1536 215 25 17 chr6 62017352 62017705 -120397537 + MLT1A1 LTR MaLR 10 365 0 340 239 144 91 chr6 62017708 62017972 -120397270 - MLT1I LTR MaLR -20 389 112 339 233 89 0 chr6 62018342 62018432 -120396810 - MIR SINE MIR -19 243 146 371 273 76 23 chr6 62018960 62019092 -120396150 - MIR SINE MIR -116 146 8 * 372 217 191 52 chr6 62019090 62019205 -120396037 + L2 LINE L2 3183 3313 0 226 281 37 0 chr6 62019765 62019847 -120395395 - L3b LINE CR1 -258 1325 1241 237 83 0 0 chr6 62019963 62019999 -120395243 + (CA)n Simple_repeat Simple_repeat 1 36 0 494 304 130 42 chr6 62020342 62020727 -120394515 + L2 LINE L2 1981 2399 -915 850 197 0 155 chr6 62022299 62022563 -120392679 + MER58A DNA MER1_type 2 224 0 215 264 0 0 chr6 62023173 62023226 -120392016 - MIR SINE MIR 0 262 210 327 280 217 37 chr6 62023285 62023474 -120391768 + MLT1J2 LTR MaLR 107 329 -121 2170 110 13 7 chr6 62023475 62023785 -120391457 + AluSx SINE Alu 1 312 0 226 277 10 50 chr6 62024071 62024172 -120391070 + L1PA16 LINE L1 2086 2182 -5399 4604 235 32 11 chr6 62024406 62025374 -120389868 + L1PA16 LINE L1 2182 3129 -4455 2839 13 0 0 chr6 62025374 62025684 -120389558 + AluYa5 SINE Alu 1 310 -1 4604 235 32 11 chr6 62025684 62026616 -120388626 + L1PA16 LINE L1 3129 4123 -3461 1505 168 62 37 chr6 62026631 62026983 -120388259 + THE1C LTR MaLR 15 375 0 8653 128 41 58 chr6 62026985 62028590 -120386652 + THE1C-int LTR MaLR 3 1580 0 1843 165 47 16 chr6 62028590 62028954 -120386288 + THE1C LTR MaLR 1 375 0 9756 197 19 17 chr6 62028954 62032391 -120382851 + L1PA16 LINE L1 4146 7595 -9 2349 75 3 40 chr6 62032799 62033120 -120382122 - AluY SINE Alu -2 309 1 197 0 71 0 chr6 62033133 62033161 -120382081 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1903 73 0 0 chr6 62033161 62033408 -120381834 - L1PA5 LINE L1 -16 6138 5892 233 250 0 15 chr6 62033411 62033479 -120381763 + MLT1J1 LTR MaLR 364 430 -16 221 289 99 33 chr6 62034628 62034780 -120380462 - MIR SINE MIR -50 212 51 2759 111 24 9 chr6 62034979 62035401 -120379841 + MSTA LTR MaLR 1 428 0 206 330 58 10 chr6 62035862 62035965 -120379277 - L3b LINE CR1 -152 1431 1324 183 304 36 0 chr6 62036128 62036184 -120379058 - L2 LINE L2 -1 3312 3255 260 300 50 10 chr6 62036421 62036521 -120378721 - L2 LINE L2 -12 3260 3157 229 306 56 0 chr6 62036658 62036730 -120378512 - MIR SINE MIR -94 168 93 1551 150 68 41 chr6 62036731 62037025 -120378217 + AluJb SINE Alu 1 302 -10 30 45 0 0 chr6 62088053 62088097 -120327145 + AT_rich Low_complexity Low_complexity 1 44 0 919 187 23 0 chr6 62088405 62088576 -120326666 - L1PB4 LINE L1 -6 6150 5976 3161 159 21 2 chr6 62088576 62089666 -120325576 - L1PB4 LINE L1 -387 5769 4655 715 202 15 10 chr6 62090032 62090230 -120325012 - L1PB4 LINE L1 -1497 4649 4451 277 316 43 71 chr6 62090390 62090741 -120324501 - L1ME LINE L1 -460 5661 5321 2666 237 58 25 chr6 62091000 62091899 -120323343 - L1ME1 LINE L1 -4 6162 5237 196 237 0 0 chr6 62091984 62092022 -120323220 + L2 LINE L2 3023 3060 -253 401 206 29 39 chr6 62092114 62092216 -120323026 + MER5A DNA MER1_type 10 110 -79 255 310 43 35 chr6 62092225 62092341 -120322901 + MIR SINE MIR 146 262 0 1337 251 38 5 chr6 62092557 62092927 -120322315 + MSTD LTR MaLR 3 384 -12 2855 190 16 4 chr6 62093119 62093671 -120321571 + MER89 LTR ERV1 1 559 0 259 277 0 48 chr6 62093915 62093998 -120321244 - MIR SINE MIR 0 262 184 724 187 33 7 chr6 62094020 62094170 -120321072 + MER5A DNA MER1_type 36 189 0 358 266 196 0 chr6 62095411 62095569 -120319673 + MIR SINE MIR 15 203 -59 2270 88 0 10 chr6 62095840 62096137 -120319105 - AluSg SINE Alu -1 309 16 329 310 55 7 chr6 62096955 62097100 -120318142 - MIR SINE MIR -107 155 4 320 45 0 0 chr6 62098190 62098234 -120317008 + L1MC2 LINE L1 5819 5862 -482 2901 149 39 13 chr6 62099256 62099792 -120315450 + L1MC1 LINE L1 5777 6326 -7 28 48 0 0 chr6 62099813 62099855 -120315387 + AT_rich Low_complexity Low_complexity 1 42 0 1693 160 14 31 chr6 62101547 62101835 -120313407 + AluJo SINE Alu 1 283 -29 2043 142 118 8 chr6 62102516 62102890 -120312352 + MSTA LTR MaLR 14 428 0 472 316 108 22 chr6 62103219 62103450 -120311792 - MIR SINE MIR 0 262 12 950 220 33 89 chr6 62103950 62104345 -120310897 - L1ME3 LINE L1 0 6162 5790 604 249 0 127 chr6 62105362 62105559 -120309683 + MER5B DNA MER1_type 6 177 -1 28 71 0 0 chr6 62105790 62105846 -120309396 + AT_rich Low_complexity Low_complexity 1 56 0 248 339 71 39 chr6 62105998 62106125 -120309117 - L2 LINE L2 0 3272 3142 257 325 12 0 chr6 62108901 62108984 -120306258 - L2 LINE L2 -7 3306 3223 247 303 92 18 chr6 62109321 62109539 -120305703 + L1ME LINE L1 243 476 -5594 1348 120 0 75 chr6 62109769 62109876 -120305366 + MER96B DNA MER1_type? 1 114 -303 744 192 8 0 chr6 62109876 62110001 -120305241 + FLAM_A SINE Alu 1 126 -7 1348 120 0 75 chr6 62110001 62110160 -120305082 + MER96B DNA MER1_type? 114 247 -170 2213 118 3 3 chr6 62110646 62110952 -120304290 + AluSx SINE Alu 1 306 -6 750 267 54 70 chr6 62110971 62111523 -120303719 + MLT1G LTR MaLR 3 559 -8 216 329 20 7 chr6 62111624 62111770 -120303472 + A-rich Low_complexity Low_complexity 5 152 0 394 68 0 0 chr6 62111803 62111862 -120303380 + L1MA5 LINE L1 6242 6300 0 917 208 54 13 chr6 62111934 62112262 -120302980 + L1ME3A LINE L1 5812 6161 -1 1372 176 109 4 chr6 62112488 62112755 -120302487 + AluJb SINE Alu 1 295 -17 1849 240 92 48 chr6 62112780 62113710 -120301532 + L1MC5 LINE L1 6923 7893 -68 533 181 0 114 chr6 62114171 62114320 -120300922 - MER20 DNA MER1_type -7 212 81 235 228 43 87 chr6 62115046 62115138 -120300104 + MIR SINE MIR 106 193 -69 407 312 47 12 chr6 62115145 62115315 -120299927 + HsTC2b DNA Tc2 2 177 -738 1317 208 135 16 chr6 62115591 62116043 -120299199 + HsTC2b DNA Tc2 202 883 -35 1990 113 25 4 chr6 62118706 62118980 -120296262 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr6 62118980 62119001 -120296241 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 191 321 36 36 chr6 62119041 62119153 -120296089 + MIR SINE MIR 59 170 -92 25 0 0 0 chr6 62119270 62119295 -120295947 + AT_rich Low_complexity Low_complexity 1 25 0 233 313 55 8 chr6 62119315 62119443 -120295799 + L1ME4a LINE L1 5726 5859 -262 290 87 22 0 chr6 62119637 62119683 -120295559 + (TG)n Simple_repeat Simple_repeat 2 48 0 544 184 159 10 chr6 62120075 62120282 -120294960 + L1ME4a LINE L1 5884 6121 0 494 288 48 0 chr6 62121222 62121368 -120293874 - MIR SINE MIR -74 188 36 226 268 0 0 chr6 62121589 62121645 -120293597 - MER20B DNA MER1_type -625 158 103 609 309 173 14 chr6 62125099 62125603 -120289639 + MLT1L LTR MaLR 6 589 -26 1712 172 32 0 chr6 62125615 62125900 -120289342 - AluJo SINE Alu -16 296 3 309 202 27 28 chr6 62127588 62127718 -120287524 + L1M2 LINE L1 5318 5445 -726 268 247 144 0 chr6 62127813 62128007 -120287235 + L1ME4a LINE L1 5850 6071 -50 658 241 24 67 chr6 62130436 62130689 -120284553 - MLT1K LTR MaLR -2 586 345 322 299 90 90 chr6 62130701 62131200 -120284042 + LTR67 LTR ERVL 8 506 -51 2393 99 0 0 chr6 62131208 62131511 -120283731 + AluSx SINE Alu 1 303 -9 1360 145 45 0 chr6 62131512 62131781 -120283461 - L1MA8 LINE L1 -7 6284 6004 369 153 14 0 chr6 62131790 62131862 -120283380 + LTR67 LTR ERVL 479 551 -6 269 404 29 10 chr6 62131868 62132076 -120283166 - MLT1K LTR MaLR -248 340 129 2052 88 4 0 chr6 62132369 62132631 -120282611 + AluSc SINE Alu 39 301 -8 675 276 47 24 chr6 62133132 62133605 -120281637 + LTR33 LTR ERVL 1 521 0 604 309 72 52 chr6 62133971 62134431 -120280811 - L2 LINE L2 -1238 2076 1608 11907 155 23 37 chr6 62134665 62134869 -120280373 + L1M1 LINE L1 12 217 -7348 2307 81 0 42 chr6 62134869 62135177 -120280065 - AluSg SINE Alu -15 295 1 11907 155 23 37 chr6 62135177 62137264 -120277978 + L1M1 LINE L1 217 2271 -5294 825 225 1 69 chr6 62137616 62137855 -120277387 - L1ME LINE L1 -602 5562 5342 2495 156 21 7 chr6 62137855 62138273 -120276969 + MSTB LTR MaLR 1 424 -2 825 225 1 69 chr6 62138273 62138324 -120276918 - L1ME LINE L1 -822 5342 5289 2788 177 43 55 chr6 62138354 62138986 -120276256 - MER82 DNA MER2_type -6 647 24 1074 204 45 101 chr6 62140340 62140737 -120274505 + MLT1B LTR MaLR 1 375 -15 1458 206 23 17 chr6 62140955 62141304 -120273938 - MLT1A1 LTR MaLR -14 351 1 1068 184 33 4 chr6 62143155 62143401 -120271841 - MLT1D LTR MaLR -42 457 227 2192 137 14 0 chr6 62143446 62143796 -120271446 - L1MB5 LINE L1 -6 6168 5814 920 103 0 0 chr6 62143796 62143913 -120271329 - AluSq SINE Alu -21 292 176 1273 134 0 0 chr6 62143965 62144137 -120271105 - AluSq SINE Alu -141 172 1 2003 135 44 76 chr6 62144137 62144596 -120270646 - L1MB5 LINE L1 -349 5825 5382 249 292 31 0 chr6 62144832 62144897 -120270345 + MIR3 SINE MIR 126 192 -16 12792 181 48 30 chr6 62145235 62146969 -120268273 + L1M1 LINE L1 12 1712 -5853 2165 114 13 22 chr6 62146969 62147249 -120267993 + AluSx SINE Alu 1 279 -33 216 0 0 0 chr6 62147249 62147273 -120267969 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2165 114 13 22 chr6 62147273 62147307 -120267935 + AluSx SINE Alu 279 312 0 12792 181 48 30 chr6 62147307 62148384 -120266858 + L1M1 LINE L1 1712 2767 -4798 360 0 0 0 chr6 62148384 62148424 -120266818 + (CA)n Simple_repeat Simple_repeat 2 41 0 12792 181 48 30 chr6 62148424 62151447 -120263795 + L1M1 LINE L1 2767 6619 -946 5353 232 80 12 chr6 62151441 62156255 -120258987 + L1PBa LINE L1 1 4262 -2600 * 431 128 0 0 chr6 62156255 62156333 -120258909 + Alu SINE Alu 235 312 0 312 258 11 0 chr6 62157061 62157154 -120258088 - L1M4c LINE L1 -3741 2641 2548 216 0 0 0 chr6 62157196 62157220 -120258022 + (TG)n Simple_repeat Simple_repeat 2 25 0 646 209 78 68 chr6 62157241 62157447 -120257795 + MER21B LTR ERV1 13 220 -643 3261 151 22 26 chr6 62157447 62158029 -120257213 + LTR22 LTR ERVK 1 580 0 987 265 56 83 chr6 62158061 62158616 -120256626 + MER21B LTR ERV1 215 754 -109 1511 252 92 56 chr6 62158667 62159761 -120255481 - L1M4c LINE L1 -4002 2561 1288 1508 161 158 3 chr6 62159761 62160078 -120255164 - MER47A DNA MER2_type 0 366 1 1511 252 92 56 chr6 62160078 62160290 -120254952 - L1M4c LINE L1 -5275 1288 1085 1488 85 5 15 chr6 62160583 62160784 -120254458 - AluSg/x SINE Alu -17 293 95 919 216 51 104 chr6 62160900 62161353 -120253889 - LTR37B LTR ERV1 -24 444 16 215 291 0 0 chr6 62161361 62161416 -120253826 + MIR SINE MIR 195 249 -13 579 269 103 0 chr6 62161445 62161620 -120253622 + MIR SINE MIR 57 249 -13 201 121 0 0 chr6 62162726 62162759 -120252483 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 599 246 134 46 chr6 62162994 62163347 -120251895 - MLT1G1 LTR MaLR 0 595 201 226 211 16 130 chr6 62163412 62163535 -120251707 - MLT1G1 LTR MaLR -456 111 3 340 231 130 42 chr6 62163808 62164024 -120251218 - L1ME LINE L1 -321 5800 5566 319 273 220 8 chr6 62164491 62164623 -120250619 + MIR SINE MIR 100 259 -3 359 238 38 0 chr6 62164636 62164716 -120250526 + MIR SINE MIR 1 83 -179 36 23 0 0 chr6 62165297 62165340 -120249902 + AT_rich Low_complexity Low_complexity 1 43 0 777 294 20 104 chr6 62166398 62167033 -120248209 - MLT1K LTR MaLR -4 584 3 302 294 214 10 chr6 62167372 62167774 -120247468 + HAL1 LINE L1 54 537 -1970 401 236 0 0 chr6 62167808 62167897 -120247345 + MER115 DNA AcHobo 491 579 -114 2544 271 195 52 chr6 62168177 62169210 -120246032 + L2 LINE L2 239 1122 -2192 2101 132 0 7 chr6 62169210 62169513 -120245729 + AluSx SINE Alu 1 301 -11 2544 271 195 52 chr6 62169513 62169696 -120245546 + L2 LINE L2 1122 1277 -2037 2169 126 0 0 chr6 62169696 62169990 -120245252 + AluSx SINE Alu 1 294 -18 2544 271 195 52 chr6 62169990 62170440 -120244802 + L2 LINE L2 1277 2146 -1168 23 33 0 0 chr6 62170869 62170899 -120244343 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr6 62171574 62171615 -120243627 + AT_rich Low_complexity Low_complexity 1 41 0 2364 92 0 7 chr6 62171884 62172190 -120243052 + AluSc SINE Alu 1 304 -5 22 0 0 0 chr6 62172339 62172361 -120242881 + AT_rich Low_complexity Low_complexity 1 22 0 1475 247 63 83 chr6 62172470 62173353 -120241889 + HAL1 LINE L1 1545 2410 -97 263 271 47 9 chr6 62175796 62175903 -120239339 + MLT1L LTR MaLR 158 268 -347 712 191 0 0 chr6 62175920 62176051 -120239191 + L1PA16 LINE L1 6016 6146 -20 267 290 9 37 chr6 62176215 62176322 -120238920 + MLT1L LTR MaLR 496 599 -16 512 188 68 38 chr6 62177713 62177846 -120237396 - L2 LINE L2 -2 3311 3175 305 254 102 17 chr6 62178163 62178244 -120236998 - MIR SINE MIR -51 211 116 228 35 0 0 chr6 62178244 62178273 -120236969 + (CA)n Simple_repeat Simple_repeat 2 30 0 305 254 102 17 chr6 62178273 62178309 -120236933 - MIR SINE MIR -146 116 84 236 290 0 32 chr6 62178729 62178791 -120236451 - MIR SINE MIR -9 253 194 613 276 167 5 chr6 62178819 62179011 -120236231 + MIR SINE MIR 4 226 -36 2015 179 4 73 chr6 62179055 62179590 -120235652 - L1 LINE L1 -1222 4924 4427 * 5657 125 7 9 chr6 62179588 62180781 -120234461 + L1PB2 LINE L1 4963 6151 0 278 274 60 0 chr6 62180826 62180910 -120234332 - MIR SINE MIR -105 157 69 996 240 41 15 chr6 62183332 62183599 -120231643 + MER90 LTR ERV1 341 614 0 2989 159 16 82 chr6 62184242 62185239 -120230003 + L1MA4 LINE L1 4995 5792 -364 190 351 18 0 chr6 62185264 62185321 -120229921 + L2 LINE L2 3203 3260 -12 443 324 77 6 chr6 62185506 62185695 -120229547 - MIR SINE MIR -29 233 33 777 303 11 31 chr6 62186056 62186317 -120228925 - MIR SINE MIR 0 262 7 201 263 70 0 chr6 62186506 62186563 -120228679 - L2 LINE L2 -4 3268 3208 806 211 17 0 chr6 62186730 62186905 -120228337 + MER20 DNA MER1_type 41 218 -1 865 248 71 10 chr6 62191498 62191743 -120223499 + MIR SINE MIR 6 262 0 1179 214 75 0 chr6 62191984 62192329 -120222913 - L1MEc LINE L1 -3550 2665 2295 463 308 36 9 chr6 62192355 62192576 -120222666 - L1MEc LINE L1 -4658 1738 1512 290 322 86 13 chr6 62192610 62192762 -120222480 + L2 LINE L2 3142 3304 -9 370 303 101 0 chr6 62193831 62193950 -120221292 - L2 LINE L2 0 3313 3183 413 312 88 23 chr6 62194338 62194553 -120220689 - MIR SINE MIR -2 260 32 265 294 106 0 chr6 62194655 62194740 -120220502 - MIR3 SINE MIR -6 202 109 212 309 72 58 chr6 62195884 62196023 -120219219 + MIR SINE MIR 50 190 -72 257 225 35 70 chr6 62196310 62196452 -120218790 + MER103 DNA DNA 3 139 -27 627 232 26 7 chr6 62197748 62197903 -120217339 - MLT1J LTR MaLR -353 158 1 588 293 104 31 chr6 62198188 62198410 -120216832 - MIR SINE MIR -13 249 12 601 211 147 6 chr6 62199920 62200076 -120215166 + MER5B DNA MER1_type 1 178 0 3661 177 35 20 chr6 62200667 62201470 -120213772 + L1MB3 LINE L1 5366 6180 -3 2514 48 0 0 chr6 62202295 62202585 -120212657 + AluY SINE Alu 22 311 0 498 346 15 10 chr6 62202868 62203073 -120212169 - L1MC/D LINE L1 -2160 5648 5443 2042 149 3 3 chr6 62203297 62203598 -120211644 + AluSx SINE Alu 1 301 -11 596 210 38 43 chr6 62204729 62204762 -120210480 + MER53 DNA DNA 2 34 -155 2013 143 10 16 chr6 62204762 62205070 -120210172 + AluSx SINE Alu 1 306 -6 596 210 38 43 chr6 62205070 62205222 -120210020 + MER53 DNA DNA 34 186 -3 256 250 171 11 chr6 62205230 62205318 -120209924 - L3 LINE CR1 -150 1427 1326 332 206 222 32 chr6 62205336 62205462 -120209780 + MIR SINE MIR 21 170 -92 351 254 169 58 chr6 62206170 62206430 -120208812 - L3 LINE CR1 -554 1023 735 2529 49 0 3 chr6 62207333 62207637 -120207605 + AluY SINE Alu 1 303 -8 738 211 97 31 chr6 62209259 62209720 -120205522 + MLT1E LTR MaLR 1 535 -7 301 182 61 10 chr6 62209884 62209983 -120205259 + L1ME4a LINE L1 6013 6116 -5 2350 95 0 0 chr6 62210436 62210740 -120204502 + AluSg SINE Alu 1 304 -6 257 302 73 39 chr6 62211305 62211484 -120203758 + MIR SINE MIR 65 249 -13 1035 235 94 87 chr6 62212897 62213543 -120201699 + Charlie7 DNA MER1_type 36 686 -1926 339 214 0 34 chr6 62213568 62213657 -120201585 + Charlie7 DNA MER1_type 2527 2612 0 285 167 0 0 chr6 62214735 62214789 -120200453 + A-rich Low_complexity Low_complexity 1 54 0 28 29 0 0 chr6 62215944 62215979 -120199263 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr6 62223498 62223525 -120191717 + AT_rich Low_complexity Low_complexity 1 27 0 237 108 0 0 chr6 62223749 62223786 -120191456 + (A)n Simple_repeat Simple_repeat 1 37 0 24 53 0 0 chr6 62225393 62225431 -120189811 + AT_rich Low_complexity Low_complexity 1 38 0 240 35 0 0 chr6 62226043 62226072 -120189170 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 29 28 0 0 chr6 62227126 62227162 -120188080 + AT_rich Low_complexity Low_complexity 1 36 0 291 194 42 0 chr6 62228366 62228438 -120186804 - MER116 DNA Mariner 0 80 6 387 0 0 0 chr6 62228670 62228713 -120186529 + (CA)n Simple_repeat Simple_repeat 2 44 0 199 311 67 22 chr6 62230781 62230871 -120184371 - MIR SINE MIR -112 150 57 762 209 104 43 chr6 62230872 62231102 -120184140 - MIR SINE MIR -1 261 18 2213 93 0 17 chr6 62232090 62232402 -120182840 + AluSx SINE Alu 1 307 0 1430 125 19 9 chr6 62232659 62232875 -120182367 + AluJb SINE Alu 91 308 -4 369 0 0 0 chr6 62233283 62233324 -120181918 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr6 62234288 62234317 -120180925 + AT_rich Low_complexity Low_complexity 1 29 0 2091 92 24 7 chr6 62234563 62234857 -120180385 + AluSg SINE Alu 1 299 -11 1777 156 58 3 chr6 62235583 62235909 -120179333 + MER2 DNA MER2_type 1 344 -1 4907 170 8 15 chr6 62236709 62237814 -120177428 + L1PB4 LINE L1 5042 6142 -14 270 0 0 0 chr6 62241416 62241446 -120173796 + (T)n Simple_repeat Simple_repeat 1 30 0 204 200 0 0 chr6 62241775 62241830 -120173412 + (CA)n Simple_repeat Simple_repeat 2 56 0 219 133 0 44 chr6 62242208 62242253 -120172989 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 739 261 17 25 chr6 62243646 62243911 -120171331 - L1ME2 LINE L1 -1 6163 5905 2684 26 0 0 chr6 62243970 62244276 -120170966 + AluYa5 SINE Alu 1 306 -5 458 383 17 20 chr6 62244481 62244776 -120170466 - L2 LINE L2 -438 2876 2583 799 173 194 5 chr6 62245262 62245539 -120169703 + MER47A DNA MER2_type 2 366 0 183 259 103 17 chr6 62245768 62245826 -120169416 - MER5B DNA MER1_type 0 178 116 1860 121 24 20 chr6 62250478 62250775 -120164467 + AluSx SINE Alu 1 298 -14 459 197 0 0 chr6 62252363 62252439 -120162803 + MIR SINE MIR 73 148 -60 496 153 73 24 chr6 62252858 62252982 -120162260 - L1MB7 LINE L1 -20 6164 6035 26 30 0 0 chr6 62253377 62253410 -120161832 + AT_rich Low_complexity Low_complexity 1 33 0 3801 33 0 0 chr6 62254612 62255063 -120160179 + L1PA3 LINE L1 5702 6152 -3 2526 61 0 0 chr6 62306459 62306769 -120108473 - AluY SINE Alu -1 310 1 383 328 123 0 chr6 62306818 62306989 -120108253 + MIR SINE MIR 41 232 -30 210 184 41 0 chr6 62308821 62308870 -120106372 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 212 319 70 32 chr6 62310280 62310437 -120104805 + L2 LINE L2 2220 2382 -932 230 217 33 0 chr6 62310638 62310698 -120104544 - L1MA4 LINE L1 -3 6297 6236 190 299 53 128 chr6 62310700 62310742 -120104500 + L2 LINE L2 2575 2619 -695 934 184 27 5 chr6 62310742 62310927 -120104315 - MER5A DNA MER1_type 0 189 1 190 299 53 128 chr6 62310927 62311315 -120103927 + L2 LINE L2 2619 2973 -341 321 311 17 25 chr6 62311926 62312045 -120103197 - MIR SINE MIR -11 251 134 217 288 58 72 chr6 62313520 62313659 -120101583 - MIR SINE MIR -106 156 20 22 35 0 0 chr6 62314353 62314382 -120100860 + AT_rich Low_complexity Low_complexity 1 29 0 34 42 0 0 chr6 62314808 62314856 -120100386 + AT_rich Low_complexity Low_complexity 1 48 0 13402 84 16 10 chr6 62314978 62317494 -120097748 - L1PA7 LINE L1 -3 6466 3934 2303 110 3 0 chr6 62317494 62317804 -120097438 - AluY SINE Alu 0 311 1 13402 84 16 10 chr6 62317804 62317971 -120097271 - L1PA7 LINE L1 -2535 3934 3769 8250 85 5 1 chr6 62317971 62319047 -120096195 - L1PA7 LINE L1 -5381 1080 1 264 320 39 48 chr6 62319315 62319418 -120095824 + MIR SINE MIR 8 109 -153 21 0 0 0 chr6 62319814 62319835 -120095407 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 62320495 62320522 -120094720 + AT_rich Low_complexity Low_complexity 1 27 0 2332 92 0 10 chr6 62321426 62321731 -120093511 + AluY SINE Alu 1 302 -9 3338 127 31 4 chr6 62322557 62323070 -120092172 - MER1A DNA MER1_type 0 527 1 29 28 0 0 chr6 62324438 62324474 -120090768 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 62326367 62326388 -120088854 + AT_rich Low_complexity Low_complexity 1 21 0 1204 167 0 0 chr6 62327567 62327765 -120087477 + L1PA16 LINE L1 5968 6165 -1 461 167 67 0 chr6 62327956 62328044 -120087198 + MLT1A1 LTR MaLR 1 94 -280 302 264 0 66 chr6 62328044 62328135 -120087107 + MER21B LTR ERV1 1 85 -778 409 243 0 0 chr6 62328162 62328236 -120087006 + MER21B LTR ERV1 19 92 -771 3632 185 58 36 chr6 62328240 62328894 -120086348 + MER21B LTR ERV1 49 724 -139 204 40 0 0 chr6 62328894 62328919 -120086323 + (AATTG)n Simple_repeat Simple_repeat 2 26 0 3632 185 58 36 chr6 62328919 62329041 -120086201 + MER21B LTR ERV1 724 842 -21 926 220 51 44 chr6 62329059 62329332 -120085910 + MLT1A1 LTR MaLR 84 358 -7 296 194 0 30 chr6 62329733 62329800 -120085442 + Charlie7 DNA MER1_type 39 103 -2509 * 301 277 60 30 chr6 62329787 62329953 -120085289 + Charlie7 DNA MER1_type 2437 2607 -5 341 183 183 0 chr6 62330302 62330373 -120084869 - AluJ/FLAM SINE Alu -218 84 1 1234 203 8 17 chr6 62330527 62330768 -120084474 + AluJb SINE Alu 54 292 -20 815 189 17 28 chr6 62332472 62332652 -120082590 - MER3 DNA MER1_type 0 209 32 1528 159 15 30 chr6 62332655 62332925 -120082317 + AluJo SINE Alu 6 271 -41 264 91 0 0 chr6 62332941 62332985 -120082257 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1808 171 0 16 chr6 62333105 62333420 -120081822 - AluJb SINE Alu -2 310 1 225 0 0 0 chr6 62333437 62333462 -120081780 + (A)n Simple_repeat Simple_repeat 1 25 0 255 321 104 52 chr6 62334164 62334585 -120080657 + L2 LINE L2 2286 2728 -586 2118 161 66 5 chr6 62334585 62334780 -120080462 + MSTA LTR MaLR 1 183 -245 186 43 0 0 chr6 62334780 62334803 -120080439 + (TC)n Simple_repeat Simple_repeat 1 23 0 2118 161 66 5 chr6 62334803 62334985 -120080257 + MSTA LTR MaLR 183 401 -27 26816 30 2 0 chr6 62334987 62338972 -120076270 - L1PA4 LINE L1 -1 6154 2161 12004 48 0 5 chr6 62338971 62340483 -120074759 + L1PA4 LINE L1 669 2173 -3973 * 244 94 0 0 chr6 62340483 62340515 -120074727 + MSTA LTR MaLR 386 417 -9 324 313 46 15 chr6 62340876 62341007 -120074235 + L2 LINE L2 3175 3309 -4 701 200 13 32 chr6 62343815 62343970 -120071272 - L2 LINE L2 -1 3312 3161 2196 98 3 46 chr6 62344076 62344402 -120070840 + AluSx SINE Alu 1 312 0 2231 97 0 7 chr6 62345619 62345919 -120069323 + AluY SINE Alu 1 298 -13 401 234 51 22 chr6 62347133 62347270 -120067972 + MIR SINE MIR 88 228 -34 316 276 238 38 chr6 62347535 62347930 -120067312 + L2 LINE L2 2808 3281 -32 281 229 33 0 chr6 62348044 62348105 -120067137 + L2 LINE L2 3236 3298 -15 273 268 144 20 chr6 62348223 62348376 -120066866 - MIR3 SINE MIR -36 172 1 2182 117 0 0 chr6 62348384 62348712 -120066530 - AluSc SINE Alu 0 309 1 1865 158 10 0 chr6 62349348 62349639 -120065603 + AluJo SINE Alu 3 296 -16 573 293 73 14 chr6 62349651 62349887 -120065355 + MIR SINE MIR 23 262 0 26 0 0 0 chr6 62351111 62351137 -120064105 + AT_rich Low_complexity Low_complexity 1 26 0 884 291 55 0 chr6 62353248 62353485 -120061757 - MIR SINE MIR -11 251 2 22 35 0 0 chr6 62354107 62354136 -120061106 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 62354220 62354249 -120060993 + AT_rich Low_complexity Low_complexity 1 29 0 1762 137 105 0 chr6 62354613 62354928 -120060314 + MER7A DNA MER2_type 1 346 0 24 0 0 0 chr6 62355008 62355032 -120060210 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 62356839 62356868 -120058374 + AT_rich Low_complexity Low_complexity 1 29 0 219 245 0 0 chr6 62358569 62358618 -120056624 + (CAT)n Simple_repeat Simple_repeat 3 51 0 21 0 0 0 chr6 62361801 62361822 -120053420 + AT_rich Low_complexity Low_complexity 1 21 0 292 260 179 21 chr6 62363580 62363724 -120051518 + MIR SINE MIR 23 188 -58 1553 201 10 7 chr6 62364473 62364761 -120050481 + AluJb SINE Alu 1 289 -23 1123 129 7 0 chr6 62365264 62365419 -120049823 + AluJb SINE Alu 132 287 -25 252 307 0 11 chr6 62366559 62366647 -120048595 + MIR SINE MIR 66 152 -110 22 0 0 0 chr6 62373336 62373358 -120041884 + AT_rich Low_complexity Low_complexity 1 22 0 183 336 149 0 chr6 62373395 62373502 -120041740 - MIR3 SINE MIR -71 137 15 2298 71 16 23 chr6 62374674 62374982 -120040260 + AluSg1 SINE Alu 1 306 -3 827 179 24 6 chr6 62377307 62377475 -120037767 + L1MB4 LINE L1 6010 6180 0 7109 126 47 14 chr6 62377822 62379013 -120036229 + Tigger3b DNA MER2_type 2 1231 0 2245 113 0 0 chr6 62383167 62383468 -120031774 - AluSx SINE Alu -11 301 1 48 32 0 0 chr6 62383488 62383550 -120031692 + AT_rich Low_complexity Low_complexity 1 62 0 191 343 14 14 chr6 62383959 62384029 -120031213 + L2 LINE L2 3191 3260 -12 29 110 0 0 chr6 62384720 62384847 -120030395 + AT_rich Low_complexity Low_complexity 1 127 0 2713 7 0 0 chr6 62385619 62385911 -120029331 - AluYa5 SINE Alu -19 292 1 2054 87 33 7 chr6 62385911 62386187 -120029055 - AluSp SINE Alu -30 283 1 232 343 15 0 chr6 62386332 62386399 -120028843 + L2 LINE L2 3246 3313 0 951 249 3 87 chr6 62387392 62387726 -120027516 + L2 LINE L2 3006 3311 -2 189 0 0 0 chr6 62388621 62388642 -120026600 + (TA)n Simple_repeat Simple_repeat 1 21 0 276 130 0 0 chr6 62388642 62388688 -120026554 + (CA)n Simple_repeat Simple_repeat 1 46 0 259 267 47 0 chr6 62388723 62388809 -120026433 + L1MC4 LINE L1 6614 6703 -1339 2216 118 0 3 chr6 62389185 62389499 -120025743 + AluSq SINE Alu 1 313 0 31 0 0 0 chr6 62390483 62390514 -120024728 + AT_rich Low_complexity Low_complexity 1 31 0 282 342 54 33 chr6 62391176 62391360 -120023882 - MIR SINE MIR -1 261 74 1047 172 50 0 chr6 62393039 62393237 -120022005 + L1MC2 LINE L1 6117 6324 -20 315 191 175 63 chr6 62393368 62393494 -120021748 - L1ME LINE L1 -400 5721 5582 306 0 0 0 chr6 62393501 62393535 -120021707 + (GA)n Simple_repeat Simple_repeat 2 35 0 2004 138 0 3 chr6 62393690 62393986 -120021256 + AluSx SINE Alu 1 295 -17 275 59 0 0 chr6 62396160 62396194 -120019048 + U2 snRNA snRNA 1 34 -154 655 276 66 22 chr6 62396258 62396486 -120018756 - MIR SINE MIR -12 250 13 407 288 77 68 chr6 62396835 62397158 -120018084 - L2 LINE L2 -22 3291 2966 2374 122 28 0 chr6 62397202 62397556 -120017686 + THE1B LTR MaLR 1 364 0 196 333 0 0 chr6 62398106 62398160 -120017082 - MIR SINE MIR -68 140 87 2365 94 0 0 chr6 62400074 62400371 -120014871 - AluSx SINE Alu -15 297 1 486 300 12 18 chr6 62401293 62401463 -120013779 + MER117 DNA MER1_type 29 197 0 207 0 0 0 chr6 62402711 62402734 -120012508 + (A)n Simple_repeat Simple_repeat 1 23 0 2289 97 3 0 chr6 62405789 62406087 -120009155 + AluSq SINE Alu 1 299 -14 210 250 0 0 chr6 62406972 62407060 -120008182 + (TA)n Simple_repeat Simple_repeat 1 88 0 2329 98 0 0 chr6 62407264 62407569 -120007673 + AluSx SINE Alu 1 305 -7 444 351 104 23 chr6 62408061 62408369 -120006873 + L2 LINE L2 2903 3235 -37 799 275 17 17 chr6 62408840 62409076 -120006166 - MIR SINE MIR -7 255 20 233 209 127 100 chr6 62409362 62409472 -120005770 + MER5A DNA MER1_type 74 186 -3 1134 172 33 5 chr6 62409926 62410141 -120005101 + L1MB3 LINE L1 5955 6175 -8 2122 128 0 3 chr6 62410145 62410451 -120004791 - AluSx SINE Alu -7 305 1 1001 67 0 37 chr6 62410455 62410590 -120004652 - AluSc SINE Alu -18 291 162 255 246 149 26 chr6 62410658 62410772 -120004470 + MIR SINE MIR 18 145 -63 244 265 88 0 chr6 62411088 62411156 -120004086 - L2 LINE L2 0 3313 3240 199 345 166 24 chr6 62411219 62411628 -120003614 - L2 LINE L2 -337 2977 2511 1344 345 119 26 chr6 62411649 62412720 -120002522 - L2 LINE L2 -1098 2216 1047 222 37 0 0 chr6 62412999 62413026 -120002216 + (A)n Simple_repeat Simple_repeat 1 27 0 2285 81 0 3 chr6 62413976 62414273 -120000969 - AluSq SINE Alu -17 296 1 663 230 115 13 chr6 62414571 62414842 -120000400 + L1MC/D LINE L1 5529 5822 -299 2043 107 0 31 chr6 62415043 62415383 -119999859 + AluSx SINE Alu 1 331 0 28 61 0 0 chr6 62416331 62416380 -119998862 + AT_rich Low_complexity Low_complexity 1 49 0 255 293 27 106 chr6 62417955 62418045 -119997197 + MIR SINE MIR 61 130 -132 1119 126 68 5 chr6 62418045 62418235 -119997007 + L1PA16 LINE L1 5956 6157 -9 255 293 27 106 chr6 62418235 62418332 -119996910 + MIR SINE MIR 130 233 -29 28 71 0 0 chr6 62418640 62418696 -119996546 + AT_rich Low_complexity Low_complexity 1 56 0 816 159 0 0 chr6 62419123 62419249 -119995993 - AluJ SINE Alu -14 298 173 1093 153 0 0 chr6 62419432 62419595 -119995647 - AluJ SINE Alu -149 163 1 186 189 0 0 chr6 62420198 62420235 -119995007 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 574 146 0 0 chr6 62420322 62420411 -119994831 - FLAM_A SINE Alu -14 128 40 2002 108 0 82 chr6 62420845 62421160 -119994082 + AluSq SINE Alu 1 289 -24 30 0 0 0 chr6 62421160 62421190 -119994052 + AT_rich Low_complexity Low_complexity 1 30 0 267 286 14 0 chr6 62421250 62421320 -119993922 + GA-rich Low_complexity Low_complexity 3 73 0 449 324 108 6 chr6 62421321 62421497 -119993745 + MIR SINE MIR 20 213 -49 2196 106 0 0 chr6 62421719 62422002 -119993240 + AluSx SINE Alu 21 303 -9 879 239 108 0 chr6 62422057 62422270 -119992972 + MIR SINE MIR 19 254 -8 378 115 0 0 chr6 62422498 62422559 -119992683 + (TG)n Simple_repeat Simple_repeat 2 62 0 1305 188 118 7 chr6 62422613 62422884 -119992358 - AluJb SINE Alu -11 301 1 21 36 0 0 chr6 62422939 62422967 -119992275 + AT_rich Low_complexity Low_complexity 1 28 0 191 143 0 0 chr6 62423245 62423273 -119991969 - L2 LINE L2 -23 3290 3263 * 378 273 39 39 chr6 62423251 62423405 -119991837 + MIR SINE MIR 106 259 -3 192 255 0 0 chr6 62423482 62423529 -119991713 - MIR SINE MIR -112 150 104 198 291 151 12 chr6 62424002 62424088 -119991154 - MIR SINE MIR -59 149 52 349 345 88 20 chr6 62424241 62424389 -119990853 + MIR3 SINE MIR 37 194 -14 354 253 236 35 chr6 62424987 62425161 -119990081 + MIR SINE MIR 50 258 -4 1102 158 43 11 chr6 62425358 62425542 -119989700 + AluJo SINE Alu 1 190 -122 1873 168 21 10 chr6 62526382 62526769 -119888473 - L1M3 LINE L1 -468 5703 5313 229 183 12 73 chr6 62526874 62526956 -119888286 - L1M3 LINE L1 -1028 5118 5042 2077 153 3 0 chr6 62526975 62527282 -119887960 - AluSx SINE Alu -4 308 1 908 193 35 10 chr6 62527612 62527809 -119887433 - MLT1A2 LTR MaLR 0 374 173 1096 129 32 0 chr6 62528239 62528425 -119886817 - Tigger7 DNA MER2_type -1 2586 2395 906 136 0 0 chr6 62528527 62528659 -119886583 + FRAM SINE Alu 13 144 -32 243 0 0 0 chr6 62528659 62528686 -119886556 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 481 203 61 18 chr6 62528707 62528870 -119886372 - L1MB8 LINE L1 -73 6105 5936 344 200 0 0 chr6 62528868 62528938 -119886304 - L1MB8 LINE L1 -1445 4701 4632 * 3124 178 29 37 chr6 62528940 62529689 -119885553 + Cheshire DNA MER1_type 1285 2027 -393 849 164 23 0 chr6 62529818 62529946 -119885296 - FLAM_C SINE Alu -10 133 3 1807 191 3 0 chr6 62529961 62530255 -119884987 - AluJb SINE Alu -17 295 1 306 177 0 0 chr6 62530255 62530317 -119884925 + L1MB8 LINE L1 6111 6172 -6 3284 163 94 26 chr6 62530324 62531066 -119884176 - Cheshire DNA MER1_type -1110 1310 518 1884 134 11 0 chr6 62531069 62531338 -119883904 + AluSx SINE Alu 3 274 -38 350 251 111 55 chr6 62531524 62531787 -119883455 - HAL1 LINE L1 -1152 1355 1063 1965 154 7 7 chr6 62531787 62532086 -119883156 + AluSx SINE Alu 1 299 -13 350 251 111 55 chr6 62532086 62532201 -119883041 - HAL1 LINE L1 -1444 1063 956 2349 103 0 3 chr6 62532639 62532941 -119882301 - AluSq SINE Alu -12 301 1 2097 123 20 0 chr6 62533223 62533525 -119881717 - AluSx SINE Alu -4 308 1 181 338 26 26 chr6 62533979 62534056 -119881186 + L2 LINE L2 1851 1927 -1387 33 25 0 0 chr6 62534379 62534419 -119880823 + AT_rich Low_complexity Low_complexity 1 40 0 234 0 0 0 chr6 62534419 62534445 -119880797 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1524 119 0 0 chr6 62534450 62534652 -119880590 - AluSg/x SINE Alu -37 273 72 2774 282 59 43 chr6 62534814 62535136 -119880106 + L2 LINE L2 1891 2207 -1106 1963 164 3 0 chr6 62535136 62535447 -119879795 + AluSx SINE Alu 1 312 0 2774 282 59 43 chr6 62535447 62536368 -119878874 + L2 LINE L2 2207 3165 -148 2418 77 3 0 chr6 62536523 62536822 -119878420 - AluY SINE Alu -11 300 1 636 259 25 106 chr6 62536823 62537143 -119878099 - L2 LINE L2 0 3313 3020 606 137 108 14 chr6 62537589 62537728 -119877514 + L1 LINE L1 4980 5131 -1015 443 325 7 7 chr6 62537898 62538052 -119877190 + MIR SINE MIR 107 260 -2 2080 113 3 0 chr6 62538403 62538712 -119876530 + AluSq SINE Alu 1 310 0 504 266 125 40 chr6 62538722 62539168 -119876074 - L1M4 LINE L1 -1541 4605 4102 393 228 0 0 chr6 62539876 62539955 -119875287 - Tigger7 DNA MER2_type -651 82 4 1118 271 33 12 chr6 62540154 62540490 -119874752 + Cheshire DNA MER1_type 38 380 -2040 180 0 0 0 chr6 62540496 62540516 -119874726 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1926 116 22 0 chr6 62540632 62540942 -119874300 + AluSq SINE Alu 3 318 0 477 191 21 50 chr6 62541919 62541989 -119873253 + Cheshire DNA MER1_type 387 453 -1967 2451 74 0 0 chr6 62541989 62542286 -119872956 - AluY SINE Alu -14 297 1 477 191 21 50 chr6 62542286 62542356 -119872886 + Cheshire DNA MER1_type 453 523 -1897 1539 188 4 0 chr6 62542479 62542734 -119872508 - AluJb SINE Alu -44 268 13 995 181 80 19 chr6 62542747 62543061 -119872181 - MER69 DNA AcHobo -249 2277 1945 694 271 146 13 chr6 62543062 62543284 -119871958 - MER69 DNA AcHobo -2136 390 116 2152 107 3 17 chr6 62543284 62543583 -119871659 + AluSx SINE Alu 1 295 -17 694 271 146 13 chr6 62543583 62543662 -119871580 - MER69 DNA AcHobo -2410 116 49 2238 121 0 0 chr6 62543962 62544268 -119870974 - AluSx SINE Alu -5 307 2 25 51 0 0 chr6 62544283 62544322 -119870920 + AT_rich Low_complexity Low_complexity 1 39 0 1393 138 14 5 chr6 62546000 62546218 -119869024 - AluJo SINE Alu -9 303 84 183 100 0 0 chr6 62546439 62546469 -119868773 + (A)n Simple_repeat Simple_repeat 1 30 0 3797 194 100 21 chr6 62546577 62547738 -119867504 + Charlie5 DNA MER1_type 1321 2582 -42 2429 58 10 0 chr6 62547738 62548031 -119867211 + AluY SINE Alu 1 296 -15 3797 194 100 21 chr6 62548031 62548077 -119867165 + Charlie5 DNA MER1_type 2582 2623 -1 470 322 237 16 chr6 62548080 62548443 -119866799 + L2 LINE L2 2217 2659 -655 324 143 154 41 chr6 62548761 62548867 -119866375 - MLT1L LTR MaLR -338 173 99 205 339 16 0 chr6 62548942 62549004 -119866238 + L2 LINE L2 2709 2771 -543 264 344 10 10 chr6 62549074 62549170 -119866072 - MIR3 SINE MIR -28 180 85 216 0 0 0 chr6 62549229 62549253 -119865989 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 805 165 0 0 chr6 62549256 62549377 -119865865 - FLAM_C SINE Alu -22 121 1 2331 88 0 3 chr6 62549408 62549702 -119865540 - AluSc SINE Alu -16 293 1 207 368 21 0 chr6 62549704 62549799 -119865443 + MIR SINE MIR 64 160 -102 1705 183 11 0 chr6 62549812 62550116 -119865126 - AluJo SINE Alu 0 307 1 320 218 84 45 chr6 62550120 62550322 -119864920 - MER69 DNA AcHobo -10 2516 2307 210 71 0 0 chr6 62551225 62551253 -119863989 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 730 133 0 0 chr6 62551253 62551358 -119863884 + FRAM SINE Alu 1 97 -79 229 173 19 39 chr6 62551358 62551407 -119863835 - LTR29 LTR ERV1 0 622 575 2133 142 39 92 chr6 62551407 62551972 -119863270 + LTR8 LTR ERV1 1 535 -156 1961 112 10 7 chr6 62552613 62552908 -119862334 + AluSx SINE Alu 1 296 -16 1824 155 0 14 chr6 62553117 62553408 -119861834 - AluJo SINE Alu -25 287 1 203 319 101 25 chr6 62553432 62553551 -119861691 - L2 LINE L2 -8 3264 3137 248 57 29 0 chr6 62554255 62554290 -119860952 + LTR8 LTR ERV1 521 556 -135 2510 135 23 5 chr6 62554482 62554919 -119860323 + L1MD1 LINE L1 5484 5928 -314 614 184 54 7 chr6 62555375 62555522 -119859720 + L1MD1 LINE L1 5924 6077 -165 2132 167 108 30 chr6 62555522 62555994 -119859248 + LTR22 LTR ERVK 1 509 0 5143 106 14 1 chr6 62555994 62556770 -119858472 + HERVK22 LTR ERVK 1 786 -6051 * 10019 72 4 1 chr6 62556763 62558119 -119857123 + HERVK22 LTR ERVK 2314 3674 -3163 457 196 132 25 chr6 62558219 62558415 -119856827 - MSTC LTR MaLR -180 216 1 204 344 167 13 chr6 62561647 62561874 -119853368 + L2 LINE L2 2127 2388 -926 662 176 44 0 chr6 62564135 62564294 -119850948 - MER53 DNA DNA -23 166 1 318 252 137 51 chr6 62564358 62564751 -119850491 - HAL1 LINE L1 -1049 1458 1032 1812 164 50 39 chr6 62564785 62565144 -119850098 + MLT1A1 LTR MaLR 1 363 -2 945 134 102 16 chr6 62565942 62566129 -119849113 - Tigger1 DNA MER2_type 0 2418 2216 770 162 7 44 chr6 62566129 62566265 -119848977 + FLAM_C SINE Alu 1 131 -12 5823 124 17 50 chr6 62566275 62567063 -119848179 - Tigger1 DNA MER2_type -188 2230 1484 2209 114 0 0 chr6 62567063 62567360 -119847882 - AluSq SINE Alu -16 297 1 5823 124 17 50 chr6 62567360 62567627 -119847615 - Tigger1 DNA MER2_type -934 1484 1210 2133 103 33 13 chr6 62567627 62567929 -119847313 - AluSc SINE Alu -1 308 1 1641 167 34 27 chr6 62568416 62568709 -119846533 + AluJb SINE Alu 1 295 -17 699 270 87 35 chr6 62568709 62569020 -119846222 + L1MCc LINE L1 939 1265 -5158 1287 254 94 5 chr6 62569032 62569426 -119845816 + L1MEc LINE L1 35 463 -5933 423 197 17 9 chr6 62569572 62569699 -119845543 + HERVL68 LTR ERVL 1690 3880 -1262 * 455 207 77 77 chr6 62569684 62569892 -119845350 + HERVL68 LTR ERVL 1769 1976 -1061 617 232 73 6 chr6 62569985 62570162 -119845080 + HERVL68 LTR ERVL 2011 2199 -838 15428 150 19 11 chr6 62570308 62572832 -119842410 + L1PB1 LINE L1 18 2566 -4999 2324 99 10 0 chr6 62572832 62573136 -119842106 + AluSg SINE Alu 3 309 -1 15428 150 19 11 chr6 62573136 62573268 -119841974 + L1PB1 LINE L1 2566 2695 -4870 6311 164 7 11 chr6 62573278 62575020 -119840222 + L1PB1 LINE L1 5396 7131 -439 2967 100 31 0 chr6 62575120 62575220 -119840022 + L1PB1 LINE L1 7107 7202 -368 291 54 0 0 chr6 62575220 62575257 -119839985 + (CA)n Simple_repeat Simple_repeat 2 38 0 2967 100 31 0 chr6 62575257 62575605 -119839637 + L1PB1 LINE L1 7202 7569 -1 1667 113 0 10 chr6 62575638 62575930 -119839312 + L1 LINE L1 4556 4844 -1302 825 183 104 0 chr6 62575949 62576151 -119839091 + LTR65 LTR ERV1 326 548 -121 1476 205 11 11 chr6 62576163 62576539 -119838703 - L1 LINE L1 -922 5224 4849 268 244 0 98 chr6 62576546 62576669 -119838573 + LTR65 LTR ERV1 554 664 -5 1746 163 95 8 chr6 62576956 62577336 -119837906 + Cheshire DNA MER1_type 2005 2417 -3 1873 164 3 19 chr6 62577681 62577999 -119837243 - AluSq SINE Alu 0 313 1 28 0 0 0 chr6 62578344 62578372 -119836870 + AT_rich Low_complexity Low_complexity 1 28 0 986 140 7 13 chr6 62578474 62578624 -119836618 - AluJb SINE Alu -163 149 1 861 144 0 0 chr6 62579608 62579726 -119835516 - FLAM_C SINE Alu -20 123 6 25 51 0 0 chr6 62580135 62580174 -119835068 + AT_rich Low_complexity Low_complexity 1 39 0 250 277 113 13 chr6 62580200 62580359 -119834883 - L1MC4a LINE L1 -1694 6114 5940 422 278 57 35 chr6 62580381 62580611 -119834631 - L1MC4a LINE L1 -1900 5908 5674 1624 241 14 43 chr6 62580690 62581250 -119833992 - L1MA9 LINE L1 -38 6274 5731 359 266 49 108 chr6 62581326 62581447 -119833795 - L1MC4a LINE L1 -2026 5782 5655 1835 182 3 10 chr6 62581447 62581760 -119833482 + AluJo SINE Alu 1 311 -1 359 266 49 108 chr6 62581760 62582026 -119833216 - L1MC4a LINE L1 -2153 5655 5418 873 218 74 22 chr6 62582910 62583222 -119832020 - Tigger8 DNA MER2_type -186 480 153 5718 78 10 31 chr6 62583592 62584422 -119830820 + THE1A-int LTR MaLR 769 1580 0 2120 116 11 59 chr6 62584422 62584793 -119830449 + THE1A LTR MaLR 1 353 -2 4641 135 37 8 chr6 62585155 62585916 -119829326 + LTR39 LTR ERV1 1 783 0 185 316 70 76 chr6 62586164 62586322 -119828920 - L2 LINE L2 -542 2772 2616 522 196 0 10 chr6 62586408 62586505 -119828737 - FLAM_A SINE Alu -13 129 34 350 46 62 0 chr6 62586897 62586962 -119828280 + (TA)n Simple_repeat Simple_repeat 1 69 0 212 86 29 0 chr6 62586965 62587000 -119828242 + (GA)n Simple_repeat Simple_repeat 1 36 0 27 29 0 0 chr6 62587173 62587207 -119828035 + AT_rich Low_complexity Low_complexity 1 34 0 2477 78 3 0 chr6 62588019 62588325 -119826917 + AluSc SINE Alu 2 308 -1 538 274 30 11 chr6 62589130 62589393 -119825849 + L1ME1 LINE L1 3327 3594 -2552 3121 209 48 10 chr6 62589410 62590426 -119824816 + L1ME1 LINE L1 5003 6052 -114 339 25 0 0 chr6 62590442 62590482 -119824760 + (TC)n Simple_repeat Simple_repeat 2 41 0 207 0 0 0 chr6 62590481 62590504 -119824738 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 1809 161 39 4 chr6 62590517 62590796 -119824446 - AluJo SINE Alu -23 289 1 591 266 50 32 chr6 62591038 62591404 -119823838 + MLT1H LTR MaLR 136 549 0 183 232 0 0 chr6 62591834 62591890 -119823352 + (TGGA)n Simple_repeat Simple_repeat 2 57 0 181 57 57 0 chr6 62592034 62592069 -119823173 + T-rich Low_complexity Low_complexity 6 42 0 2360 71 0 3 chr6 62592114 62592408 -119822834 + AluSx SINE Alu 1 293 -19 276 30 0 0 chr6 62592560 62592593 -119822649 + (CA)n Simple_repeat Simple_repeat 1 33 0 666 280 52 55 chr6 62592716 62593045 -119822197 - MLT1J LTR MaLR -179 332 5 274 235 12 12 chr6 62593495 62593576 -119821666 + (TA)n Simple_repeat Simple_repeat 2 82 0 956 164 7 0 chr6 62593590 62593742 -119821500 + FRAM SINE Alu 1 153 -23 31 26 0 0 chr6 62593742 62593780 -119821462 + AT_rich Low_complexity Low_complexity 1 38 0 2268 111 0 13 chr6 62594263 62594578 -119820664 - AluSx SINE Alu -1 311 1 2314 94 0 7 chr6 62595306 62595613 -119819629 - AluSc SINE Alu -4 305 1 2062 137 0 7 chr6 62596044 62596350 -119818892 + AluSx SINE Alu 1 304 -8 229 143 60 24 chr6 62596404 62596488 -119818754 + (TA)n Simple_repeat Simple_repeat 1 87 0 1062 278 101 45 chr6 62596489 62597546 -119817696 - L1ME3 LINE L1 -210 5952 4796 1887 167 17 0 chr6 62597546 62597846 -119817396 - AluJb SINE Alu -7 305 1 1062 278 101 45 chr6 62597846 62598122 -119817120 - L1ME3 LINE L1 -1366 4796 4537 296 342 27 9 chr6 62598131 62598242 -119817000 + MIR SINE MIR 35 147 -115 352 254 8 34 chr6 62598437 62598555 -119816687 - L1ME3 LINE L1 -1604 4542 4428 1659 141 50 20 chr6 62598662 62598960 -119816282 - AluJb SINE Alu -5 307 1 457 238 146 0 chr6 62598981 62599132 -119816110 - L1ME3A LINE L1 -5 6165 5993 205 305 11 74 chr6 62600090 62600185 -119815057 - L2 LINE L2 0 3272 3184 1944 163 0 7 chr6 62600993 62601300 -119813942 - AluJo SINE Alu -7 305 1 2590 52 3 0 chr6 62601478 62601785 -119813457 + AluY SINE Alu 1 308 -3 444 291 96 57 chr6 62601786 62602016 -119813226 + MIR SINE MIR 24 262 0 1365 263 129 18 chr6 62602164 62602730 -119812512 + L2 LINE L2 1281 1909 -1405 1632 181 116 24 chr6 62602730 62603151 -119812091 - MLT1C LTR MaLR 0 467 8 4544 168 7 36 chr6 62603281 62604158 -119811084 + L1PA15-16 LINE L1 709 1559 -5290 4722 87 68 33 chr6 62604163 62604887 -119810355 + SVA Other Other 638 1386 0 686 139 53 20 chr6 62605197 62605348 -119809894 + L1PA15-16 LINE L1 1548 1703 -5146 7980 247 30 18 chr6 62605353 62605451 -119809791 + L1PA15-16 LINE L1 2325 2420 -4429 1804 176 3 26 chr6 62605451 62605757 -119809485 - AluJb SINE Alu -12 300 2 7980 247 30 18 chr6 62605757 62607515 -119807727 + L1PA15-16 LINE L1 2420 4226 -2623 1716 185 3 3 chr6 62607515 62607842 -119807400 + AluJo SINE Alu 2 328 0 7980 247 30 18 chr6 62607842 62608593 -119806649 + L1PA15-16 LINE L1 4226 4967 -1882 4706 162 36 8 chr6 62608693 62609739 -119805503 + L1MB3 LINE L1 5111 6181 -2 1945 114 71 0 chr6 62610216 62610496 -119804746 + AluSx SINE Alu 1 300 -12 831 228 53 20 chr6 62610525 62610771 -119804471 + MER112 DNA MER1_type 6 259 -1 2160 110 3 0 chr6 62611595 62611896 -119803346 - AluY SINE Alu -9 302 1 1883 152 26 16 chr6 62612072 62612381 -119802861 + AluJo SINE Alu 1 312 0 667 248 0 0 chr6 62612668 62612813 -119802429 - MIR SINE MIR -4 258 114 692 292 31 6 chr6 62613071 62613516 -119801726 + LTR33 LTR ERVL 7 521 0 2216 102 0 0 chr6 62614289 62614605 -119800637 + AluSx SINE Alu 1 316 0 243 0 0 0 chr6 62614987 62615014 -119800228 + (TA)n Simple_repeat Simple_repeat 1 27 0 596 181 0 0 chr6 62615016 62615121 -119800121 - FRAM SINE Alu -17 159 55 1565 191 31 3 chr6 62615895 62616188 -119799054 + AluJo SINE Alu 1 301 -11 455 276 159 7 chr6 62616467 62616612 -119798630 + MIR SINE MIR 13 179 -83 245 236 27 9 chr6 62616636 62616746 -119798496 + (TTA)n Simple_repeat Simple_repeat 1 112 0 * 330 176 33 55 chr6 62616705 62616920 -119798322 + (TTATA)n Simple_repeat Simple_repeat 1 210 0 655 244 97 6 chr6 62617604 62617780 -119797462 + MIR SINE MIR 68 259 -3 1413 183 147 31 chr6 62618401 62618756 -119796486 - MSTD LTR MaLR 0 396 1 530 136 0 0 chr6 62619129 62619210 -119796032 - AluS SINE Alu -231 81 1 374 276 176 20 chr6 62622134 62622336 -119792906 + MIR SINE MIR 38 262 0 614 253 7 0 chr6 62622816 62622962 -119792280 + L2 LINE L2 3167 3313 0 192 0 0 116 chr6 62625660 62625703 -119789539 + (CAAAAA)n Simple_repeat Simple_repeat 6 43 0 342 285 80 22 chr6 62625896 62626033 -119789209 + MIR3 SINE MIR 37 181 -27 241 286 52 0 chr6 62626201 62626278 -119788964 - L2 LINE L2 -227 3086 3006 3577 161 35 23 chr6 62626292 62626952 -119788290 + Tigger7 DNA MER2_type 1 668 -1819 712 156 28 7 chr6 62626954 62627095 -119788147 + Tigger7 DNA MER2_type 2344 2487 0 2054 122 17 3 chr6 62627395 62627689 -119787553 + AluSc SINE Alu 1 298 -11 806 338 138 50 chr6 62628114 62628864 -119786378 + L2 LINE L2 1301 1984 -1330 1179 122 9 45 chr6 62628864 62629086 -119786156 - L1MB8 LINE L1 -6 6172 5959 806 338 138 50 chr6 62629086 62629097 -119786145 + L2 LINE L2 1984 1993 -1321 678 97 0 71 chr6 62629097 62629210 -119786032 - U6 snRNA snRNA -2 105 1 806 338 138 50 chr6 62629210 62629696 -119785546 + L2 LINE L2 1993 2658 -656 278 268 72 22 chr6 62629761 62629899 -119785343 - MLT1L LTR MaLR -6 609 465 250 238 50 12 chr6 62630066 62630146 -119785096 - MLT1J LTR MaLR -331 180 98 198 265 0 0 chr6 62630198 62630247 -119784995 + L2 LINE L2 2718 2766 -548 324 227 15 0 chr6 62630616 62630682 -119784560 + L2 LINE L2 3206 3272 0 2233 124 0 0 chr6 62630806 62631105 -119784137 - AluSx SINE Alu -13 299 1 1763 134 0 19 chr6 62631306 62631567 -119783675 + AluSq SINE Alu 58 313 0 21 0 0 0 chr6 62631589 62631610 -119783632 + AT_rich Low_complexity Low_complexity 1 21 0 1908 163 3 25 chr6 62631962 62632281 -119782961 + AluJo SINE Alu 1 312 0 2826 242 80 41 chr6 62632303 62633202 -119782040 + L1MEc LINE L1 1868 2730 -3485 1709 194 7 0 chr6 62633202 62633486 -119781756 + AluJb SINE Alu 1 286 -26 2826 242 80 41 chr6 62633486 62634095 -119781147 + L1MEc LINE L1 2730 3413 -2802 1786 164 6 31 chr6 62634095 62634413 -119780829 + AluJb SINE Alu 3 312 0 2826 242 80 41 chr6 62634413 62634493 -119780749 + L1MEc LINE L1 3413 3488 -2727 312 235 136 0 chr6 62634531 62634612 -119780630 - Charlie1 DNA MER1_type -2669 92 1 191 234 13 0 chr6 62634670 62634747 -119780495 + (TA)n Simple_repeat Simple_repeat 2 79 0 10907 98 27 17 chr6 62634848 62636641 -119778601 + HERVK22 LTR ERVK 3188 6837 0 2420 173 82 11 chr6 62636642 62637116 -119778126 + LTR22 LTR ERVK 2 509 0 424 170 117 11 chr6 62637116 62637210 -119778032 + L1MD1 LINE L1 6072 6175 -67 6690 217 40 74 chr6 62637228 62638225 -119777017 - L1MB8 LINE L1 -12 6977 5947 2067 145 3 3 chr6 62638225 62638535 -119776707 - AluJb SINE Alu 0 312 3 6690 217 40 74 chr6 62638535 62638722 -119776520 - L1MB8 LINE L1 -1042 5947 5755 2175 94 0 0 chr6 62638722 62638999 -119776243 - AluSc SINE Alu -5 304 28 6690 217 40 74 chr6 62638999 62639649 -119775593 - L1MB8 LINE L1 -1234 5755 5084 2165 121 0 0 chr6 62639649 62639946 -119775296 - AluSx SINE Alu -15 297 1 6690 217 40 74 chr6 62639946 62640119 -119775123 - L1MB8 LINE L1 -1905 5084 4907 2271 104 3 13 chr6 62640119 62640428 -119774814 - AluSq SINE Alu -7 306 1 6690 217 40 74 chr6 62640428 62641691 -119773551 - L1MB8 LINE L1 -2082 4907 3602 1910 147 3 20 chr6 62641691 62641990 -119773252 - AluJb SINE Alu -16 296 3 2188 71 3 25 chr6 62642000 62642282 -119772960 - AluSp SINE Alu -13 300 25 6690 217 40 74 chr6 62642282 62642327 -119772915 - L1MB8 LINE L1 -3396 3593 3548 560 167 40 16 chr6 62642327 62642453 -119772789 - L1MA8 LINE L1 -6 6285 6157 6690 217 40 74 chr6 62642453 62643047 -119772195 - L1MB8 LINE L1 -3441 3548 3200 1417 221 24 10 chr6 62643049 62643339 -119771903 + AluJb SINE Alu 3 296 -6 1023 40 0 0 chr6 62643341 62643501 -119771741 + L1PA3 LINE L1 6008 6167 0 667 181 13 13 chr6 62643507 62643690 -119771552 - L1MB8 LINE L1 -3761 3196 3014 1976 243 64 36 chr6 62643720 62645832 -119769410 - L1MB8 LINE L1 -4753 2206 11 1172 107 0 0 chr6 62645836 62645995 -119769247 - AluSg/x SINE Alu -17 295 137 240 150 7 0 chr6 62646004 62646068 -119769174 + L1MD1 LINE L1 6179 6359 0 27 73 0 0 chr6 62646290 62646345 -119768897 + AT_rich Low_complexity Low_complexity 1 55 0 2008 238 87 35 chr6 62646345 62646954 -119768288 + L1MC4 LINE L1 7093 7756 -286 2288 75 7 3 chr6 62646954 62647247 -119767995 + AluSg SINE Alu 1 294 -16 2008 238 87 35 chr6 62647247 62647441 -119767801 + L1MC4 LINE L1 7756 7938 -104 1880 89 0 102 chr6 62648302 62648626 -119766616 - AluY SINE Alu -20 291 1 2326 90 10 0 chr6 62649562 62649862 -119765380 - AluY SINE Alu -8 303 1 1731 191 24 0 chr6 62649867 62650165 -119765077 - AluJo SINE Alu -7 305 1 2148 122 143 11 chr6 62650275 62650653 -119764589 + MSTA LTR MaLR 1 428 0 273 167 67 44 chr6 62650770 62650860 -119764382 - L1ME LINE L1 -338 5783 5692 1722 154 0 21 chr6 62651288 62651567 -119763675 - AluJb SINE Alu -11 301 29 377 218 11 23 chr6 62653401 62653488 -119761754 + MER5A DNA MER1_type 60 145 -44 378 239 77 17 chr6 62654855 62654972 -119760270 - L1ME3A LINE L1 -9 6161 6038 1024 156 15 35 chr6 62656236 62656435 -119758807 - AluJo SINE Alu 0 312 118 23 78 0 0 chr6 62656555 62656606 -119758636 + AT_rich Low_complexity Low_complexity 1 51 0 389 217 63 56 chr6 62656831 62656974 -119758268 + MIR SINE MIR 119 262 0 1948 145 10 13 chr6 62657268 62657571 -119757671 - AluJo SINE Alu -7 305 4 1848 163 0 3 chr6 62657747 62658062 -119757180 - AluSx SINE Alu 0 312 4 258 136 0 0 chr6 62658092 62658136 -119757106 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 583 140 32 11 chr6 62658384 62658477 -119756765 - FLAM_A SINE Alu -36 106 12 1716 186 7 14 chr6 62658668 62658963 -119756279 - AluJo SINE Alu -19 293 1 657 194 143 74 chr6 62659246 62659295 -119755947 - MER63C DNA MER1_type -130 932 888 2275 100 0 7 chr6 62659295 62659596 -119755646 + AluSx SINE Alu 1 299 -13 657 194 143 74 chr6 62659596 62659804 -119755438 - MER63C DNA MER1_type -174 888 657 1214 139 0 0 chr6 62659982 62660148 -119755094 + AluSx SINE Alu 7 172 -140 1214 118 0 0 chr6 62660147 62660308 -119754934 + AluSg/x SINE Alu 132 292 -20 556 184 6 0 chr6 62660336 62660453 -119754789 - MER63C DNA MER1_type -551 379 259 407 149 0 15 chr6 62660453 62660520 -119754722 - MER2 DNA MER2_type 0 345 280 22 35 0 0 chr6 62660520 62660549 -119754693 + AT_rich Low_complexity Low_complexity 1 29 0 660 180 62 0 chr6 62660558 62660719 -119754523 - MER2 DNA MER2_type -135 210 40 28 71 0 0 chr6 62662121 62662177 -119753065 + AT_rich Low_complexity Low_complexity 1 56 0 623 145 0 24 chr6 62662952 62663187 -119752055 - MER63D DNA MER1_type -619 442 152 2531 188 141 10 chr6 62664778 62665573 -119749669 + Charlie5 DNA MER1_type 1 897 -1715 1148 145 0 0 chr6 62665577 62665743 -119749499 - AluSg/x SINE Alu -13 299 134 2099 116 10 10 chr6 62665743 62666036 -119749206 - AluSx SINE Alu -18 294 2 969 213 59 59 chr6 62666036 62666071 -119749171 + Charlie5 DNA MER1_type 889 923 -1701 1643 163 37 34 chr6 62666071 62666366 -119748876 - AluJb SINE Alu -16 296 1 969 213 59 59 chr6 62666366 62666476 -119748766 + Charlie5 DNA MER1_type 923 1032 -1592 2249 108 0 0 chr6 62666476 62666771 -119748471 + AluY SINE Alu 2 296 -15 969 213 59 59 chr6 62666771 62666999 -119748243 + Charlie5 DNA MER1_type 1031 1263 -1361 752 119 8 24 chr6 62666999 62667125 -119748117 + AluYb8 SINE Alu 1 124 -194 511 124 101 11 chr6 62667250 62667339 -119747903 - AluS SINE Alu -215 97 1 671 221 116 6 chr6 62668873 62669045 -119746197 + MIR SINE MIR 11 201 -61 23 0 0 0 chr6 62669485 62669508 -119745734 + AT_rich Low_complexity Low_complexity 1 23 0 586 136 178 17 chr6 62672727 62672845 -119742397 + AluJo SINE Alu 57 193 -119 429 284 14 47 chr6 62672845 62673060 -119742182 + HAL1 LINE L1 2246 2453 -54 306 250 113 63 chr6 62673177 62673315 -119741927 + L1ME2 LINE L1 4369 4499 -1647 2150 102 7 13 chr6 62673315 62673618 -119741624 + AluSx SINE Alu 1 301 -11 306 250 113 63 chr6 62673618 62673939 -119741303 + L1ME2 LINE L1 4499 4851 -1295 770 249 122 30 chr6 62673955 62674192 -119741050 + MIR SINE MIR 2 260 -2 835 231 18 6 chr6 62674200 62674369 -119740873 + MER45A DNA AcHobo 1 171 -7 2985 157 30 21 chr6 62674581 62674929 -119740313 + L1 LINE L1 4562 4918 -1228 1802 167 7 7 chr6 62674929 62675228 -119740014 + AluJo SINE Alu 1 299 -13 2985 157 30 21 chr6 62675228 62675453 -119739789 + L1 LINE L1 4918 5140 -1006 1047 169 9 66 chr6 62675469 62675682 -119739560 + AluJo SINE Alu 45 245 -67 815 270 100 73 chr6 62675749 62676389 -119738853 - PABL_B LTR ERV1 0 667 11 254 220 0 0 chr6 62676399 62676449 -119738793 - PABL_B LTR ERV1 -617 50 1 254 210 0 0 chr6 62676449 62676511 -119738731 + FAM SINE Alu 118 179 0 3547 119 21 8 chr6 62676511 62677328 -119737914 + L1MA5A LINE L1 5319 6274 -23 23 33 0 0 chr6 62677328 62677358 -119737884 + AT_rich Low_complexity Low_complexity 1 30 0 3079 201 87 73 chr6 62677374 62678559 -119736683 + L1MC5 LINE L1 6635 7835 -126 199 207 110 37 chr6 62678882 62678964 -119736278 - MIR SINE MIR 0 262 175 587 318 81 37 chr6 62678994 62679370 -119735872 + L1ME2 LINE L1 5337 5732 -385 1781 162 50 0 chr6 62679370 62679667 -119735575 + AluJb SINE Alu 1 312 0 191 128 51 0 chr6 62679671 62679710 -119735532 + A-rich Low_complexity Low_complexity 5 45 0 2124 113 3 0 chr6 62679767 62680050 -119735192 + AluSx SINE Alu 3 286 -26 759 219 97 4 chr6 62680102 62680330 -119734912 + L1ME2 LINE L1 5743 5991 -173 227 88 0 0 chr6 62680364 62680398 -119734844 + MER3 DNA MER1_type 16 49 -160 364 295 21 53 chr6 62680511 62680701 -119734541 + L1ME4a LINE L1 5809 5992 -129 1076 234 125 99 chr6 62681124 62681667 -119733575 - MER77 LTR ERV1 -6 599 43 327 353 0 26 chr6 62681690 62681806 -119733436 + L2 LINE L2 3124 3236 -36 812 293 4 29 chr6 62681820 62682066 -119733176 + MIR SINE MIR 23 262 0 218 200 22 0 chr6 62682097 62682142 -119733100 + L2 LINE L2 3222 3267 -5 247 322 33 22 chr6 62682274 62682364 -119732878 + MIR3 SINE MIR 99 189 -19 22 80 0 0 chr6 62682847 62682897 -119732345 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr6 62683315 62683336 -119731906 + AT_rich Low_complexity Low_complexity 1 21 0 2273 70 10 45 chr6 62683440 62683752 -119731490 + AluY SINE Alu 1 301 -10 2265 215 78 33 chr6 62684214 62684813 -119730429 - MLT1E2 LTR MaLR 0 626 1 48 18 0 0 chr6 62684960 62685015 -119730227 + AT_rich Low_complexity Low_complexity 1 55 0 378 198 0 0 chr6 62685912 62685988 -119729254 + AluS SINE Alu 1 61 -239 452 186 107 79 chr6 62686649 62686789 -119728453 + MER103 DNA DNA 21 164 -2 1513 167 45 28 chr6 62687732 62688020 -119727222 + AluJb SINE Alu 1 293 -19 524 190 0 10 chr6 62688198 62688298 -119726944 - FLAM_C SINE Alu -10 133 35 2229 105 0 3 chr6 62688335 62688641 -119726601 - AluSx SINE Alu -6 306 2 198 0 0 0 chr6 62688754 62688776 -119726466 + (T)n Simple_repeat Simple_repeat 1 22 0 538 144 93 0 chr6 62689805 62689902 -119725340 + MER20 DNA MER1_type 34 139 -80 5937 248 16 38 chr6 62689902 62691572 -119723670 - L1 LINE L1 -2377 3951 2320 873 201 145 0 chr6 62691572 62691751 -119723491 - AluJb SINE Alu -21 291 87 4965 195 22 13 chr6 62691751 62693905 -119721337 - L1 LINE L1 -3998 2330 1 237 200 20 0 chr6 62695779 62695829 -119719413 + (TA)n Simple_repeat Simple_repeat 1 51 0 790 156 0 0 chr6 62695999 62696121 -119719121 + LTR8 LTR ERV1 570 691 0 500 145 0 12 chr6 62696121 62696203 -119719039 - LTR29 LTR ERV1 -44 578 498 1305 124 0 60 chr6 62696196 62696430 -119718812 - MER50 LTR ERV1 -18 716 497 2252 111 0 0 chr6 62696725 62697023 -119718219 - AluSx SINE Alu -12 300 3 250 358 90 0 chr6 62697215 62697349 -119717893 + MIR SINE MIR 47 192 -70 710 135 9 0 chr6 62697613 62697724 -119717518 - LTR8A LTR ERV1 -615 112 1 201 180 16 49 chr6 62697896 62697957 -119717285 + T-rich Low_complexity Low_complexity 1 59 0 369 218 11 23 chr6 62698561 62698648 -119716594 + MER5A DNA MER1_type 60 145 -44 184 196 78 39 chr6 62699091 62699142 -119716100 + L3b LINE CR1 1380 1432 -151 24 0 0 0 chr6 62699584 62699608 -119715634 + AT_rich Low_complexity Low_complexity 1 24 0 6084 36 2 0 chr6 62750468 62751849 -119663393 - L1PA5 LINE L1 -127 6027 4644 6886 43 0 0 chr6 62751851 62752759 -119662483 + L1P LINE L1 2353 3260 -2886 261 337 105 72 chr6 62752855 62752902 -119662340 + L2 LINE L2 2812 2856 -416 2310 125 0 0 chr6 62752902 62753213 -119662029 - AluSx SINE Alu 0 312 2 261 337 105 72 chr6 62753213 62753375 -119661867 + L2 LINE L2 2856 3035 -237 1792 153 0 36 chr6 62753375 62753676 -119661566 + AluJb SINE Alu 1 290 -22 261 337 105 72 chr6 62753676 62753741 -119661501 + L2 LINE L2 3035 3096 -176 372 333 41 7 chr6 62753799 62753946 -119661296 - L2 LINE L2 -5 3267 3116 2353 72 7 10 chr6 62754014 62754318 -119660924 - AluSp SINE Alu -10 303 1 702 249 136 10 chr6 62754410 62754711 -119660531 + HAL1 LINE L1 1689 2027 -480 1936 163 0 13 chr6 62754724 62754860 -119660382 + AluJb SINE Alu 1 137 -175 2012 110 3 13 chr6 62754860 62755161 -119660081 + AluY SINE Alu 1 298 -13 1936 163 0 13 chr6 62755161 62755325 -119659917 + AluJb SINE Alu 137 297 -15 441 230 185 6 chr6 62755895 62756073 -119659169 + LTR16C LTR ERVL 224 433 -58 24 0 0 0 chr6 62756819 62756843 -119658399 + AT_rich Low_complexity Low_complexity 1 24 0 2386 105 0 0 chr6 62756886 62757191 -119658051 + AluSg SINE Alu 1 305 -5 386 299 0 35 chr6 62757551 62757695 -119657547 + MER34 LTR ERV1 5 143 -399 1985 106 11 7 chr6 62757703 62757976 -119657266 - AluSx SINE Alu -2 310 37 888 212 50 71 chr6 62757981 62758388 -119656854 + MER39 LTR ERV1 280 542 0 25 65 0 0 chr6 62758660 62758706 -119656536 + AT_rich Low_complexity Low_complexity 1 46 0 2390 92 3 0 chr6 62759627 62759932 -119655310 - AluSx SINE Alu -6 306 1 227 213 0 0 chr6 62761558 62761605 -119653637 + (TA)n Simple_repeat Simple_repeat 2 48 0 232 283 0 22 chr6 62761606 62761698 -119653544 - L1MC4 LINE L1 -1339 6703 6614 265 202 0 22 chr6 62761700 62761789 -119653453 + (TA)n Simple_repeat Simple_repeat 1 87 0 314 259 35 12 chr6 62761804 62761889 -119653353 + L1MC4 LINE L1 6614 6700 -1342 1221 309 179 26 chr6 62762455 62763444 -119651798 - L2 LINE L2 -1858 1456 317 246 143 71 0 chr6 62764440 62764482 -119650760 - Tigger5 DNA MER2_type 0 2323 2279 335 167 30 0 chr6 62764485 62764551 -119650691 - Tigger5 DNA MER2_type -22 2301 2234 358 157 14 14 chr6 62764604 62764674 -119650568 - Tigger5 DNA MER2_type -3 2320 2251 241 220 0 0 chr6 62764643 62764693 -119650549 - Tigger5 DNA MER2_type -2268 55 6 * 1886 134 70 0 chr6 62764990 62765274 -119649968 + AluSx SINE Alu 2 305 -7 3476 183 22 12 chr6 62765337 62765983 -119649259 + MER82 DNA MER2_type 2 653 0 182 152 0 43 chr6 62766639 62766685 -119648557 + A-rich Low_complexity Low_complexity 2 45 0 391 227 227 23 chr6 62767365 62767493 -119647749 + MIR SINE MIR 68 221 -41 1682 144 18 0 chr6 62767515 62767793 -119647449 + MER46B DNA MER2_type 4 161 -75 1725 165 0 31 chr6 62767793 62768115 -119647127 + AluJo SINE Alu 1 313 0 284 308 68 48 chr6 62768594 62768740 -119646502 - MER5A DNA MER1_type -2 187 39 431 239 54 7 chr6 62768899 62769101 -119646141 + LTR16B LTR ERVL 209 451 -13 418 254 0 141 chr6 62769166 62769224 -119646018 - MER5B DNA MER1_type -1 177 112 1870 146 13 19 chr6 62769224 62769532 -119645710 + AluJo SINE Alu 1 306 -6 418 254 0 141 chr6 62769532 62769588 -119645654 - MER5B DNA MER1_type -66 112 84 2068 98 19 81 chr6 62769588 62769947 -119645295 - MER1B DNA MER1_type 0 337 1 418 254 0 141 chr6 62769947 62769973 -119645269 - MER5B DNA MER1_type -94 84 56 6730 177 117 32 chr6 62770210 62770941 -119644301 + L1MDa LINE L1 16 683 -5857 1853 143 42 3 chr6 62770941 62771228 -119644014 - AluJb SINE Alu -14 298 1 6730 177 117 32 chr6 62771228 62772592 -119642650 + L1MDa LINE L1 683 2335 -4205 1955 148 57 9 chr6 62772592 62772923 -119642319 + MER7A DNA MER2_type 1 345 -1 6730 177 117 32 chr6 62772923 62773019 -119642223 + L1MDa LINE L1 2335 2421 -4119 394 181 181 8 chr6 62773002 62773135 -119642107 + L1MDa LINE L1 2994 3149 -3391 * 2810 134 35 35 chr6 62773143 62773671 -119641571 - MER41B LTR ERV1 -12 597 114 3316 239 60 27 chr6 62773689 62773930 -119641312 + L1MDa LINE L1 3164 3396 -3144 1906 139 13 0 chr6 62773930 62774232 -119641010 - AluSx SINE Alu -6 306 1 3316 239 60 27 chr6 62774232 62775193 -119640049 + L1MDa LINE L1 3396 4406 -2134 1969 125 3 10 chr6 62775193 62775488 -119639754 + AluSx SINE Alu 1 293 -19 867 218 150 4 chr6 62775594 62775828 -119639414 - L1MCa LINE L1 -6062 364 97 34 0 0 0 chr6 62776213 62776247 -119638995 + AT_rich Low_complexity Low_complexity 1 34 0 210 225 0 0 chr6 62777165 62777205 -119638037 + (CA)n Simple_repeat Simple_repeat 1 40 0 888 128 0 0 chr6 62777972 62778097 -119637145 + AluSq/x SINE Alu 1 125 -188 276 255 78 21 chr6 62778535 62778676 -119636566 - MER103 DNA DNA -14 152 4 557 236 93 7 chr6 62778929 62779090 -119636152 + MIR SINE MIR 2 177 -31 826 199 55 22 chr6 62779236 62779417 -119635825 + MER58A DNA MER1_type 37 223 -1 400 297 76 11 chr6 62779796 62779981 -119635261 - L1ME LINE L1 -323 5798 5602 249 308 0 0 chr6 62780497 62780549 -119634693 - L2 LINE L2 -257 3056 3005 321 357 43 14 chr6 62781352 62781492 -119633750 + L2 LINE L2 3121 3264 -8 194 252 252 34 chr6 62781735 62781854 -119633388 - MER5B DNA MER1_type 0 178 34 1172 143 0 0 chr6 62783771 62783946 -119631296 + AluJo SINE Alu 1 175 -137 283 230 310 10 chr6 62784060 62784160 -119631082 + FLAM_A SINE Alu 1 130 -3 21 36 0 0 chr6 62784942 62784970 -119630272 + AT_rich Low_complexity Low_complexity 1 28 0 1559 129 70 33 chr6 62785006 62785309 -119629933 - AluJb SINE Alu 0 313 1 317 252 119 28 chr6 62786752 62786895 -119628347 - L1ME4a LINE L1 -11 6110 5955 194 316 76 80 chr6 62787706 62787943 -119627299 - L2 LINE L2 -626 2688 2453 295 244 137 53 chr6 62788247 62788378 -119626864 + MIR SINE MIR 2 143 -119 530 265 166 7 chr6 62788722 62788873 -119626369 - MER5A DNA MER1_type -6 183 9 2259 177 42 8 chr6 62789091 62789590 -119625652 - L1MB8 LINE L1 -179 5999 5440 2144 108 0 3 chr6 62789600 62789895 -119625347 - AluSg SINE Alu -16 294 1 311 295 57 9 chr6 62790029 62790126 -119625116 - L1MC4 LINE L1 -1330 6712 6608 558 134 179 0 chr6 62790126 62790238 -119625004 - FLAM_C SINE Alu -1 132 1 393 333 64 0 chr6 62790646 62790802 -119624440 + MIR SINE MIR 93 258 -4 1476 184 75 4 chr6 62791094 62791372 -119623870 + AluJo SINE Alu 1 298 -14 327 284 22 19 chr6 62791422 62791616 -119623626 + L1MB8 LINE L1 5245 5440 -749 1039 101 0 0 chr6 62791617 62791756 -119623486 + AluJb SINE Alu 1 139 -173 314 299 114 25 chr6 62791798 62791999 -119623243 + L1ME LINE L1 5527 5745 -417 2402 201 72 38 chr6 62793830 62794707 -119620535 - L1ME3 LINE L1 -291 5854 4961 880 219 118 4 chr6 62794701 62794971 -119620271 - L1ME3 LINE L1 -2920 3209 2909 * 2220 180 34 76 chr6 62794983 62795568 -119619674 + L1MB8 LINE L1 5587 6146 -32 2155 131 0 0 chr6 62795568 62795874 -119619368 - AluSx SINE Alu -6 306 1 2220 180 34 76 chr6 62795874 62795906 -119619336 + L1MB8 LINE L1 6146 6178 0 245 200 31 0 chr6 62795915 62795980 -119619262 - L1ME3 LINE L1 -3215 2914 2848 2007 131 3 3 chr6 62795980 62796277 -119618965 + AluSx SINE Alu 1 297 -15 300 236 91 0 chr6 62796324 62796434 -119618808 - L1ME3 LINE L1 -3277 2852 2733 5510 141 40 11 chr6 62796636 62798012 -119617230 - L1PB4 LINE L1 -2 6154 4740 23 54 0 0 chr6 62800230 62800267 -119614975 + AT_rich Low_complexity Low_complexity 1 37 0 760 189 0 0 chr6 62800755 62800877 -119614365 - FLAM_C SINE Alu -10 123 2 2426 66 0 35 chr6 62802413 62802731 -119612511 + AluY SINE Alu 1 307 -4 198 0 0 0 chr6 62802865 62802887 -119612355 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 256 291 58 39 chr6 62803810 62803913 -119611329 + L2 LINE L2 3207 3311 -2 2039 114 7 10 chr6 62803929 62804227 -119611015 - AluSx SINE Alu -15 297 1 228 214 262 12 chr6 62804237 62804321 -119610921 + HsTC2 DNA Tc2 4 108 -1790 450 339 56 25 chr6 62804328 62804614 -119610628 - L1ME3 LINE L1 -5502 617 323 2100 112 13 25 chr6 62804732 62805046 -119610196 - AluSx SINE Alu -2 310 1 272 81 0 0 chr6 62806008 62806045 -119609197 - tRNA-Cys-TGC tRNA tRNA -38 37 1 2255 100 0 3 chr6 62806537 62806836 -119608406 + AluSq SINE Alu 1 298 -15 195 42 0 0 chr6 62807149 62807173 -119608069 + (T)n Simple_repeat Simple_repeat 1 24 0 294 318 28 19 chr6 62807287 62807394 -119607848 + MIR SINE MIR 46 153 -109 1907 132 112 0 chr6 62808080 62808383 -119606859 - MER1B DNA MER1_type 0 337 1 215 240 20 0 chr6 62809248 62809298 -119605944 - MIR SINE MIR -14 248 198 347 272 26 35 chr6 62809351 62809465 -119605777 - MIR SINE MIR -74 188 76 1402 116 22 30 chr6 62810758 62810990 -119604252 - MER30 DNA MER1_type 0 230 1 232 256 0 12 chr6 62811269 62811351 -119603891 + (TA)n Simple_repeat Simple_repeat 1 81 0 919 194 99 0 chr6 62811402 62811613 -119603629 - L1MC3 LINE L1 0 7785 7554 198 0 0 0 chr6 62811618 62811640 -119603602 + (TCCCC)n Simple_repeat Simple_repeat 5 26 0 215 200 0 0 chr6 62811640 62811680 -119603562 + (TCTCG)n Simple_repeat Simple_repeat 2 41 0 1958 136 0 7 chr6 62811681 62811968 -119603274 - AluJb SINE Alu -27 285 1 316 211 42 0 chr6 62811970 62812041 -119603201 - L1MC3 LINE L1 -215 7570 7497 555 233 148 55 chr6 62812677 62812879 -119602363 + MER58A DNA MER1_type 4 224 0 21 0 0 0 chr6 62812995 62813016 -119602226 + AT_rich Low_complexity Low_complexity 1 21 0 1157 134 0 17 chr6 62813019 62813198 -119602044 - AluSg/x SINE Alu -3 307 132 286 56 0 0 chr6 62814497 62814533 -119600709 - MER116 DNA Mariner 0 80 45 349 359 47 47 chr6 62814551 62814763 -119600479 + L2 LINE L2 3043 3254 -18 2841 6 0 0 chr6 62814772 62815083 -119600159 - AluY SINE Alu 0 311 1 703 233 49 12 chr6 62815522 62815685 -119599557 + MIR SINE MIR 4 172 -90 231 245 133 20 chr6 62815953 62816051 -119599191 - MIR SINE MIR -75 187 79 2565 181 102 56 chr6 62816226 62816772 -119598470 - L1M4c LINE L1 -4471 1911 1166 225 0 0 0 chr6 62816772 62816797 -119598445 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 2565 181 102 56 chr6 62816797 62817065 -119598177 - L1M4c LINE L1 -5216 1166 912 3462 101 83 15 chr6 62817065 62817366 -119597876 - Tigger3(Golem) DNA MER2_type -120 2908 2629 2184 105 3 0 chr6 62817366 62817660 -119597582 - AluSx SINE Alu -17 295 1 3462 101 83 15 chr6 62817660 62817950 -119597292 - Tigger3(Golem) DNA MER2_type -399 2629 2277 1885 154 38 0 chr6 62817949 62818268 -119596974 - Tigger3(Golem) DNA MER2_type -2696 333 3 * 499 181 0 11 chr6 62818363 62818457 -119596785 + Tigger5 DNA MER2_type 14 106 -2217 216 97 0 0 chr6 62818516 62818547 -119596695 + (CA)n Simple_repeat Simple_repeat 2 32 0 686 232 104 21 chr6 62818558 62818799 -119596443 - L1M4 LINE L1 -1231 4915 4655 303 247 178 0 chr6 62819127 62819200 -119596042 + L2 LINE L2 3224 3309 -4 23 33 0 0 chr6 62819321 62819351 -119595891 + AT_rich Low_complexity Low_complexity 1 30 0 1293 241 123 41 chr6 62821674 62822473 -119592769 - L2 LINE L2 0 3313 2449 193 40 0 0 chr6 62822931 62822956 -119592286 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 438 102 0 0 chr6 62822956 62823015 -119592227 - Alu SINE Alu -30 280 222 998 163 12 0 chr6 62823060 62823220 -119592022 + AluJb SINE Alu 136 297 -15 313 289 134 80 chr6 62823643 62824017 -119591225 + L1M2 LINE L1 1006 1399 -5450 328 45 0 0 chr6 62826626 62826670 -119588572 + MER21A LTR ERV1 39 82 -849 3543 147 161 44 chr6 62826670 62827473 -119587769 + MER21A LTR ERV1 35 931 0 630 247 58 0 chr6 62827518 62827672 -119587570 - MIR SINE MIR -91 171 9 184 233 0 0 chr6 62827786 62827816 -119587426 - L2 LINE L2 -22 3291 3262 261 308 59 71 chr6 62828109 62828278 -119586964 - MIR SINE MIR -27 235 69 2172 109 3 3 chr6 62828467 62828761 -119586481 + AluSx SINE Alu 1 294 -18 436 291 0 7 chr6 62829478 62829619 -119585623 + L1MC/D LINE L1 1075 1214 -4905 473 253 188 50 chr6 62831190 62831510 -119583732 + L1MC/D LINE L1 4019 4382 -1747 676 316 111 50 chr6 62831633 62832155 -119583087 + L1MC/D LINE L1 4606 5159 -970 445 307 60 33 chr6 62832295 62832743 -119582499 + L1MC/D LINE L1 5346 5822 -343 1242 161 69 72 chr6 62832743 62833048 -119582194 + AluSx SINE Alu 1 304 -8 445 307 60 33 chr6 62833048 62833064 -119582178 + L1MC/D LINE L1 5822 5836 -329 180 0 0 0 chr6 62833864 62833884 -119581358 + (A)n Simple_repeat Simple_repeat 1 20 0 2328 81 3 0 chr6 62833984 62834267 -119580975 - AluSx SINE Alu -11 301 18 456 272 83 26 chr6 62836297 62836525 -119578717 - L1ME LINE L1 -350 5771 5531 2283 95 0 3 chr6 62837655 62837949 -119577293 - AluSg SINE Alu -17 293 1 24 32 0 0 chr6 62840111 62840142 -119575100 + AT_rich Low_complexity Low_complexity 1 31 0 2110 129 53 17 chr6 62842045 62842462 -119572780 - L1MB3 LINE L1 -7 6176 5745 236 224 143 25 chr6 62842595 62842756 -119572486 - L1MC4a LINE L1 -1773 6035 5856 1764 143 17 17 chr6 62842781 62843082 -119572160 - AluSx SINE Alu -10 302 2 1542 173 36 22 chr6 62843199 62843477 -119571765 - AluJo SINE Alu -30 282 1 225 263 42 76 chr6 62843678 62843796 -119571446 - L2 LINE L2 -56 3257 3144 838 143 15 15 chr6 62843941 62844074 -119571168 + AluJ SINE Alu 1 133 -169 25 51 0 0 chr6 62845719 62845758 -119569484 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr6 62846534 62846557 -119568685 + AT_rich Low_complexity Low_complexity 1 23 0 1827 219 142 12 chr6 62846760 62847240 -119568002 + MLT1F LTR MaLR 1 542 0 207 0 0 0 chr6 62847951 62847974 -119567268 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr6 62848472 62848500 -119566742 + AT_rich Low_complexity Low_complexity 1 28 0 1659 159 44 14 chr6 62849068 62849246 -119565996 - AluJo SINE Alu -8 304 112 262 43 64 0 chr6 62849246 62849293 -119565949 + T-rich Low_complexity Low_complexity 5 54 0 1659 159 44 14 chr6 62849293 62849409 -119565833 - AluJo SINE Alu -200 112 1 1872 86 0 4 chr6 62849621 62849865 -119565377 + AluY SINE Alu 56 298 -13 1128 148 0 0 chr6 62849867 62850029 -119565213 + AluJ SINE Alu 136 297 -15 441 230 185 6 chr6 62850599 62850777 -119564465 + LTR16C LTR ERVL 224 433 -58 24 0 0 0 chr6 62851523 62851547 -119563695 + AT_rich Low_complexity Low_complexity 1 24 0 2386 105 0 0 chr6 62851590 62851895 -119563347 + AluSg SINE Alu 1 305 -5 386 299 0 35 chr6 62852255 62852399 -119562843 + MER34 LTR ERV1 5 143 -399 1964 110 11 7 chr6 62852407 62852680 -119562562 - AluSx SINE Alu -2 310 37 941 222 52 74 chr6 62852685 62853095 -119562147 + MER34 LTR ERV1 143 542 0 25 65 0 0 chr6 62853367 62853413 -119561829 + AT_rich Low_complexity Low_complexity 1 46 0 2390 92 3 0 chr6 62854334 62854639 -119560603 - AluSx SINE Alu -6 306 1 227 213 0 0 chr6 62856265 62856312 -119558930 + (TA)n Simple_repeat Simple_repeat 2 48 0 232 283 0 22 chr6 62856313 62856405 -119558837 - L1MC4 LINE L1 -1339 6703 6614 265 202 0 22 chr6 62856407 62856496 -119558746 + (TA)n Simple_repeat Simple_repeat 1 87 0 316 264 35 11 chr6 62856511 62856598 -119558644 + L1MC4 LINE L1 6614 6702 -1340 1231 308 179 26 chr6 62857164 62858153 -119557089 - L2 LINE L2 -1858 1456 317 246 143 71 0 chr6 62859149 62859191 -119556051 - Tigger5 DNA MER2_type 0 2323 2279 335 167 30 0 chr6 62859194 62859260 -119555982 - Tigger5 DNA MER2_type -22 2301 2234 358 157 14 14 chr6 62859313 62859383 -119555859 - Tigger5 DNA MER2_type -3 2320 2251 241 220 0 0 chr6 62859352 62859402 -119555840 - Tigger5 DNA MER2_type -2268 55 6 * 1886 134 70 0 chr6 62859699 62859983 -119555259 + AluSx SINE Alu 2 305 -7 3476 183 22 12 chr6 62860046 62860692 -119554550 + MER82 DNA MER2_type 2 653 0 182 152 0 43 chr6 62861348 62861394 -119553848 + A-rich Low_complexity Low_complexity 2 45 0 391 227 227 23 chr6 62862074 62862202 -119553040 + MIR SINE MIR 68 221 -41 1682 144 18 0 chr6 62862224 62862502 -119552740 + MER46B DNA MER2_type 4 161 -75 1725 165 0 31 chr6 62862502 62862824 -119552418 + AluJo SINE Alu 1 313 0 284 308 68 48 chr6 62863303 62863449 -119551793 - MER5A DNA MER1_type -2 187 39 431 239 54 7 chr6 62863608 62863810 -119551432 + LTR16B LTR ERVL 209 451 -13 418 254 0 141 chr6 62863875 62863933 -119551309 - MER5B DNA MER1_type -1 177 112 1870 146 13 19 chr6 62863933 62864241 -119551001 + AluJo SINE Alu 1 306 -6 418 254 0 141 chr6 62864241 62864297 -119550945 - MER5B DNA MER1_type -66 112 84 2042 100 19 81 chr6 62864297 62864656 -119550586 - MER1B DNA MER1_type 0 337 1 418 254 0 141 chr6 62864656 62864682 -119550560 - MER5B DNA MER1_type -94 84 56 7123 186 138 41 chr6 62864919 62865650 -119549592 + L1ME1 LINE L1 16 675 -5865 1853 143 42 3 chr6 62865650 62865937 -119549305 - AluJb SINE Alu -14 298 1 7123 186 138 41 chr6 62865937 62867301 -119547941 + L1ME1 LINE L1 675 2336 -4204 1939 148 57 9 chr6 62867301 62867632 -119547610 + MER7A DNA MER2_type 1 345 -1 7123 186 138 41 chr6 62867632 62867728 -119547514 + L1ME1 LINE L1 2336 2421 -4119 353 176 183 8 chr6 62867711 62867842 -119547400 + L1ME1 LINE L1 2994 3147 -3393 * 2660 134 35 35 chr6 62867852 62868380 -119546862 - MER41B LTR ERV1 -12 597 114 6791 222 81 19 chr6 62868398 62868639 -119546603 + L1ME1 LINE L1 3164 3389 -3171 1954 139 13 0 chr6 62868639 62868941 -119546301 - AluSx SINE Alu -6 306 1 6791 222 81 19 chr6 62868941 62869903 -119545339 + L1ME1 LINE L1 3389 4291 -2269 2102 126 3 10 chr6 62869903 62870212 -119545030 + AluSx SINE Alu 1 307 -5 6791 222 81 19 chr6 62870212 62872185 -119543057 + L1ME1 LINE L1 4291 6534 -26 27 49 0 0 chr6 62872188 62872229 -119543013 + AT_rich Low_complexity Low_complexity 1 41 0 1881 248 52 48 chr6 62874110 62874803 -119540439 + L1ME3A LINE L1 5460 6155 -15 4889 138 30 36 chr6 62874958 62875489 -119539753 + L1MB3 LINE L1 5297 5822 -361 678 200 78 0 chr6 62875489 62875604 -119539638 + FLAM_A SINE Alu 2 125 -8 4889 138 30 36 chr6 62875604 62875957 -119539285 + L1MB3 LINE L1 5822 6176 -7 1336 212 75 77 chr6 62876109 62876652 -119538590 + MER34 LTR ERV1 1 542 0 859 287 97 50 chr6 62877402 62878215 -119537027 - L2 LINE L2 -38 3275 2431 2364 97 7 0 chr6 62878695 62879003 -119536239 + AluSx SINE Alu 1 310 -2 986 211 78 9 chr6 62880016 62880234 -119535008 + MIR SINE MIR 23 255 -7 664 281 115 73 chr6 62880457 62880811 -119534431 - L1MEd LINE L1 -4905 1214 876 2335 103 0 13 chr6 62880811 62881123 -119534119 - AluSg SINE Alu -2 308 1 664 281 115 73 chr6 62881123 62881674 -119533568 - L1MEd LINE L1 -5243 876 271 299 261 45 11 chr6 62882374 62882462 -119532780 + MER20B DNA MER1_type 35 125 -658 253 240 25 50 chr6 62882735 62882856 -119532386 + L1MC/D LINE L1 5194 5311 -835 385 279 120 17 chr6 62882873 62883129 -119532113 + L1MC/D LINE L1 5359 5637 -484 2285 85 17 3 chr6 62883604 62883899 -119531343 + AluSg SINE Alu 1 299 -11 352 243 140 37 chr6 62884939 62885003 -119530239 - L1MC4a LINE L1 -1716 6092 6036 1524 184 0 44 chr6 62885003 62885296 -119529946 - AluJo SINE Alu -32 280 1 352 243 140 37 chr6 62885296 62885367 -119529875 - L1MC4a LINE L1 -1772 6036 5943 2154 113 0 0 chr6 62885843 62886156 -119529086 - AluY SINE Alu 0 313 1 1398 194 81 0 chr6 62886224 62886508 -119528734 + AluJo SINE Alu 1 307 -5 2146 125 0 3 chr6 62886516 62886820 -119528422 + AluSq SINE Alu 3 305 -8 2577 150 17 92 chr6 62886896 62887437 -119527805 + MLT1D LTR MaLR 1 500 -5 8060 31 0 0 chr6 62887751 62889259 -119525983 - L1PA5 LINE L1 -2 6152 4644 7381 43 0 0 chr6 62889261 62890169 -119525073 + L1P LINE L1 2353 3260 -2886 271 325 106 75 chr6 62890265 62890312 -119524930 + L2 LINE L2 2812 2856 -416 2296 125 0 0 chr6 62890312 62890623 -119524619 - AluSx SINE Alu 0 312 2 271 325 106 75 chr6 62890623 62890786 -119524456 + L2 LINE L2 2856 3034 -238 1791 149 0 36 chr6 62890786 62891087 -119524155 + AluJb SINE Alu 1 290 -22 271 325 106 75 chr6 62891087 62891140 -119524102 + L2 LINE L2 3034 3084 -188 352 333 41 7 chr6 62891210 62891357 -119523885 - L2 LINE L2 -5 3267 3116 2404 71 7 10 chr6 62891425 62891734 -119523508 - AluSp SINE Alu -5 308 1 812 252 134 10 chr6 62891826 62892132 -119523110 + HAL1 LINE L1 1689 2032 -475 1934 163 0 32 chr6 62892140 62892276 -119522966 + AluJo SINE Alu 1 140 -172 2483 71 3 3 chr6 62892276 62892587 -119522655 + AluY SINE Alu 1 311 0 1934 163 0 32 chr6 62892587 62892763 -119522479 + AluJo SINE Alu 140 303 -9 257 234 55 114 chr6 62892856 62893022 -119522220 + HAL1 LINE L1 2299 2453 -54 2340 57 53 0 chr6 62893022 62893305 -119521937 - AluY SINE Alu -13 298 1 257 234 55 114 chr6 62893305 62893339 -119521903 + HAL1 LINE L1 2453 2487 -20 206 327 0 0 chr6 62893488 62893540 -119521702 + L2 LINE L2 3250 3301 -12 1885 118 3 24 chr6 62894785 62895108 -119520134 - AluSx SINE Alu 0 317 1 618 223 14 0 chr6 62895120 62895259 -119519983 - MER45R DNA AcHobo -645 936 796 2339 120 276 9 chr6 62895261 62895711 -119519531 + MER101B LTR ERV1 1 570 0 2159 208 152 62 chr6 62895711 62895812 -119519430 - MER45R DNA AcHobo -784 797 707 1947 98 76 4 chr6 62895812 62896089 -119519153 + AluSp SINE Alu 1 297 -16 2159 208 152 62 chr6 62896089 62896711 -119518531 - MER45R DNA AcHobo -874 707 9 2584 50 0 7 chr6 62898187 62898489 -119516753 - AluY SINE Alu -11 300 1 1674 149 115 52 chr6 62899716 62900176 -119515066 - MER51A LTR ERV1 0 634 1 2299 114 0 0 chr6 62900793 62901100 -119514142 + AluSq SINE Alu 1 307 -6 910 284 71 69 chr6 62901620 62902098 -119513144 - L2 LINE L2 0 3313 2835 1384 172 17 4 chr6 62902140 62902373 -119512869 + MER46A DNA MER2_type 1 236 0 579 283 70 5 chr6 62902635 62902822 -119512420 - MLT1J2 LTR MaLR 0 450 252 428 202 67 10 chr6 62903610 62903714 -119511528 - MIR SINE MIR -12 250 141 2276 103 0 0 chr6 62903773 62904074 -119511168 - AluSx SINE Alu -11 301 1 962 189 46 0 chr6 62905362 62905537 -119509705 - MER5A DNA MER1_type -6 183 1 5374 78 6 3 chr6 62905779 62906437 -119508805 + PABL_A LTR ERV1 1 660 0 2484 73 0 0 chr6 62906550 62906851 -119508391 + AluY SINE Alu 1 301 -10 363 44 0 0 chr6 62907338 62907383 -119507859 + (CA)n Simple_repeat Simple_repeat 2 46 0 326 107 18 0 chr6 62907965 62908021 -119507221 + (CA)n Simple_repeat Simple_repeat 2 58 0 294 29 0 0 chr6 62908048 62908083 -119507159 + (CA)n Simple_repeat Simple_repeat 1 35 0 2443 74 3 0 chr6 62908604 62908902 -119506340 - AluSp SINE Alu -12 301 3 821 264 84 0 chr6 62908971 62909198 -119506044 + MIR SINE MIR 14 259 -3 665 259 103 62 chr6 62910602 62910845 -119504397 - MLT1H LTR MaLR -200 349 97 410 250 134 9 chr6 62910845 62910957 -119504285 - FLAM_A SINE Alu -16 126 1 967 243 65 132 chr6 62910982 62911415 -119503827 + LTR16A LTR ERVL 1 404 -53 1154 232 224 13 chr6 62912461 62912904 -119502338 - LTR33A LTR ERVL -2 521 1 734 269 149 29 chr6 62912988 62913364 -119501878 + LTR33 LTR ERVL 99 519 -2 377 248 52 59 chr6 62913434 62913587 -119501655 + MIR SINE MIR 2 153 -109 180 277 85 0 chr6 62914381 62914428 -119500814 + L2 LINE L2 3214 3264 -8 180 328 35 17 chr6 62914480 62914538 -119500704 + L2 LINE L2 3003 3061 -211 1853 208 50 28 chr6 62914562 62915019 -119500223 - MLT1C LTR MaLR 0 467 1 1731 128 0 4 chr6 62915928 62916178 -119499064 - AluSc SINE Alu -9 300 52 261 211 11 78 chr6 62916317 62916407 -119498835 + MIR SINE MIR 129 212 -50 236 260 24 118 chr6 62918142 62918311 -119496931 + MIR SINE MIR 107 259 -3 688 251 16 11 chr6 62918618 62918801 -119496441 - LTR16C LTR ERVL -33 458 275 658 176 17 8 chr6 62918966 62919085 -119496157 + FLAM_C SINE Alu 7 126 -17 4084 31 0 0 chr6 62919189 62919677 -119495565 - L1P LINE L1 -782 5364 4877 1054 139 0 0 chr6 62919752 62919903 -119495339 + AluJo SINE Alu 7 157 -155 494 184 0 11 chr6 62919903 62919990 -119495252 - AluJ/FLAM SINE Alu -225 87 2 34007 37 3 0 chr6 62920756 62926107 -119489135 - L1PA3 LINE L1 -3 6152 791 633 97 89 0 chr6 62926207 62926331 -119488911 + Tigger3(Golem) DNA MER2_type 199 333 -2696 * 3245 103 83 15 chr6 62926330 62926620 -119488622 + Tigger3(Golem) DNA MER2_type 2277 2546 -482 2233 105 3 0 chr6 62926620 62926914 -119488328 + AluSx SINE Alu 1 295 -17 3245 103 83 15 chr6 62926914 62927215 -119488027 + Tigger3(Golem) DNA MER2_type 2546 2908 -120 2361 180 102 56 chr6 62927215 62927483 -119487759 + L1M4c LINE L1 912 1166 -5216 225 0 0 0 chr6 62927483 62927508 -119487734 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 2361 180 102 56 chr6 62927508 62928054 -119487188 + L1M4c LINE L1 1166 1911 -4471 221 245 133 20 chr6 62928229 62928327 -119486915 + MIR SINE MIR 79 187 -75 702 233 49 12 chr6 62928595 62928758 -119486484 - MIR SINE MIR -90 172 4 2881 6 0 0 chr6 62929197 62929508 -119485734 + AluY SINE Alu 1 311 0 1180 171 0 0 chr6 62929509 62929684 -119485558 + AluJo/FRAM SINE Alu 129 303 -9 392 203 64 129 chr6 62929776 62929943 -119485299 + HAL1 LINE L1 2299 2452 -55 2376 52 52 0 chr6 62929943 62930230 -119485012 - AluY SINE Alu -9 302 1 392 203 64 129 chr6 62930230 62930264 -119484978 + HAL1 LINE L1 2452 2487 -20 211 327 0 0 chr6 62930413 62930465 -119484777 + L2 LINE L2 3250 3301 -12 1891 115 3 24 chr6 62931710 62932033 -119483209 - AluSx SINE Alu 0 317 1 546 223 14 0 chr6 62932045 62932184 -119483058 - MER45R DNA AcHobo -645 936 796 2118 120 276 9 chr6 62932186 62932636 -119482606 + MER101B LTR ERV1 1 570 0 1877 217 148 58 chr6 62932636 62932737 -119482505 - MER45R DNA AcHobo -784 797 707 1964 93 75 4 chr6 62932737 62933015 -119482227 + AluSp SINE Alu 1 298 -15 1877 217 148 58 chr6 62933015 62933637 -119481605 - MER45R DNA AcHobo -874 707 9 2564 50 0 7 chr6 62935113 62935415 -119479827 - AluY SINE Alu -11 300 1 1523 149 115 52 chr6 62936642 62937102 -119478140 - MER51A LTR ERV1 0 634 1 2302 114 0 0 chr6 62937719 62938026 -119477216 + AluSq SINE Alu 1 307 -6 941 318 42 40 chr6 62938546 62939024 -119476218 - L2 LINE L2 0 3313 2835 1293 167 17 4 chr6 62939066 62939299 -119475943 + MER46A DNA MER2_type 1 236 0 509 283 70 5 chr6 62939561 62939748 -119475494 - MLT1J2 LTR MaLR 0 450 252 3473 85 0 8 chr6 62940239 62940723 -119474519 - L1P LINE L1 -5666 480 1 1738 126 60 39 chr6 62940725 62941010 -119474232 - AluSc SINE Alu -18 291 1 1795 129 89 11 chr6 62941171 62941451 -119473791 + AluSx SINE Alu 1 302 -10 461 328 15 5 chr6 62941793 62941988 -119473254 + L1ME3A LINE L1 5689 5885 -285 2159 123 7 3 chr6 62942050 62942360 -119472882 + AluSx SINE Alu 1 311 -1 282 179 0 0 chr6 62942386 62942442 -119472800 + (TA)n Simple_repeat Simple_repeat 1 56 0 1333 175 44 24 chr6 62942591 62942842 -119472400 + AluJb SINE Alu 38 293 -19 263 161 18 0 chr6 62942911 62942967 -119472275 + GA-rich Low_complexity Low_complexity 3 59 0 323 143 275 11 chr6 62943169 62943260 -119471982 - L2 LINE L2 0 3313 3199 369 328 147 0 chr6 62943335 62943451 -119471791 - L2 LINE L2 0 3272 3140 2302 76 0 17 chr6 62943640 62943971 -119471271 + AluY SINE Alu 1 326 0 2064 134 7 0 chr6 62943987 62944277 -119470965 + AluSx SINE Alu 1 292 -20 243 315 168 33 chr6 62945617 62946016 -119469226 - L2 LINE L2 -26 3246 2776 356 211 102 8 chr6 62946100 62946228 -119469014 - L1ME4a LINE L1 0 6121 5982 590 165 0 0 chr6 62946334 62946443 -119468799 - L1MD3 LINE L1 0 7995 7887 2284 104 3 0 chr6 62946450 62946748 -119468494 - AluSg SINE Alu -10 300 2 361 176 33 0 chr6 62946775 62946866 -119468376 - L1MB3 LINE L1 -3 6180 6087 2684 142 22 36 chr6 62946869 62947403 -119467839 - L1MA4 LINE L1 -280 6020 5494 2054 151 39 34 chr6 62948440 62948825 -119466417 + MLT1B LTR MaLR 1 387 -3 180 329 132 13 chr6 62949478 62949630 -119465612 + MIR SINE MIR 37 206 -56 328 336 15 0 chr6 62949875 62950006 -119465236 - MER94 DNA DNA 0 134 2 335 261 159 0 chr6 62950635 62950773 -119464469 + L1MC4a LINE L1 5546 5705 -416 14448 102 5 4 chr6 62950773 62953731 -119461511 + L1PA8 LINE L1 3191 6172 0 34683 91 14 18 chr6 62953749 62959924 -119455318 + L1PA6 LINE L1 11 6154 0 439 323 9 5 chr6 62959923 62960140 -119455102 + L1MC4a LINE L1 5689 5906 -1902 * 2274 100 0 7 chr6 62960140 62960439 -119454803 + AluSx SINE Alu 1 297 -15 383 236 7 0 chr6 62960495 62960635 -119454607 + (TA)n Simple_repeat Simple_repeat 2 142 0 388 258 35 91 chr6 62960635 62960757 -119454485 + L1ME4a LINE L1 5935 6043 -78 1832 123 72 4 chr6 62960757 62961033 -119454209 - AluSx SINE Alu -17 295 1 388 258 35 91 chr6 62961033 62961108 -119454134 + L1ME4a LINE L1 6043 6121 0 22 0 0 0 chr6 62961280 62961302 -119453940 + AT_rich Low_complexity Low_complexity 1 22 0 288 294 34 54 chr6 62961624 62961828 -119453414 + L2 LINE L2 2260 2459 -855 3842 189 37 97 chr6 62961835 62963105 -119452137 + L1MC4a LINE L1 6049 7087 -721 2272 102 0 20 chr6 62963105 62963410 -119451832 + AluSx SINE Alu 4 302 -10 3842 189 37 97 chr6 62963410 62963913 -119451329 + L1MC4a LINE L1 7087 7619 -189 1982 118 0 4 chr6 62964022 62964328 -119450914 + AluSg SINE Alu 1 305 0 24 53 0 0 chr6 62964620 62964658 -119450584 + AT_rich Low_complexity Low_complexity 1 38 0 255 103 0 0 chr6 62964995 62965034 -119450208 + (TC)n Simple_repeat Simple_repeat 2 40 0 201 74 0 0 chr6 62966385 62966412 -119448830 + (TG)n Simple_repeat Simple_repeat 1 27 0 518 87 0 0 chr6 62966683 62966752 -119448490 + Alu SINE Alu 1 69 -241 2197 121 3 0 chr6 62967148 62967455 -119447787 + AluSp SINE Alu 1 308 -5 1862 137 3 65 chr6 62967464 62967786 -119447456 + AluSx SINE Alu 3 304 -8 23 0 0 0 chr6 62969289 62969312 -119445930 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr6 62969547 62969568 -119445674 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 1931 114 0 62 chr6 62969569 62969877 -119445365 - AluSx SINE Alu -23 289 1 273 325 42 17 chr6 62971287 62971407 -119443835 - L2 LINE L2 -1 3271 3149 1033 246 89 60 chr6 62972788 62972807 -119442435 - L1ME3A LINE L1 -241 5929 5912 713 243 138 102 chr6 62972807 62972861 -119442381 - LTR33 LTR ERVL -1 520 469 2224 111 0 46 chr6 62972861 62973185 -119442057 + AluSg SINE Alu 1 309 -1 713 243 138 102 chr6 62973185 62973202 -119442040 - LTR33 LTR ERVL -52 469 454 2226 65 54 0 chr6 62973202 62973480 -119441762 - AluY SINE Alu -18 293 1 713 243 138 102 chr6 62973480 62973909 -119441333 - LTR33 LTR ERVL -67 454 1 1033 246 89 60 chr6 62973909 62974061 -119441181 - L1ME3A LINE L1 -258 5912 5766 1913 145 23 0 chr6 62974061 62974365 -119440877 - AluJb SINE Alu -1 311 1 1033 246 89 60 chr6 62974365 62974811 -119440431 - L1ME3A LINE L1 -404 5766 5293 356 98 0 0 chr6 62974811 62974872 -119440370 - L1PA8 LINE L1 0 6172 6112 1561 63 0 19 chr6 62974877 62975084 -119440158 - SVA Other Other -2 1384 1182 6228 15 0 34 chr6 62975084 62975831 -119439411 - L1PA2 LINE L1 -2 6153 5432 2472 19 0 0 chr6 62975829 62976183 -119439059 + L1PA2 LINE L1 5085 5438 -717 2220 50 4 0 chr6 62976183 62976441 -119438801 - LTR5 LTR ERVK -710 259 1 4288 122 59 26 chr6 62976441 62978010 -119437232 - SVA Other Other -518 1196 1 1819 172 10 3 chr6 62978161 62978452 -119436790 + AluJb SINE Alu 1 293 -19 850 70 0 0 chr6 62978555 62978670 -119436572 - L1MB3 LINE L1 -15 6168 6054 650 276 45 31 chr6 62978670 62979028 -119436214 - L1ME3A LINE L1 -1029 5117 4755 721 321 49 29 chr6 62979046 62979395 -119435847 + L2 LINE L2 2949 3304 -9 2274 102 0 9 chr6 62980175 62980490 -119434752 + AluSx SINE Alu 1 312 0 298 291 146 9 chr6 62980494 62980604 -119434638 - L2 LINE L2 -4 3268 3144 21 0 0 0 chr6 62981766 62981787 -119433455 + AT_rich Low_complexity Low_complexity 1 21 0 463 204 72 145 chr6 62981996 62982123 -119433119 + MIR SINE MIR 23 127 -135 1864 61 56 0 chr6 62982123 62982354 -119432888 + AluSg SINE Alu 37 280 -30 463 204 72 145 chr6 62982354 62982461 -119432781 + MIR SINE MIR 127 240 -22 250 263 40 30 chr6 62983011 62983110 -119432132 + MIR SINE MIR 93 192 -70 449 309 80 92 chr6 62984727 62985141 -119430101 - L2 LINE L2 0 3272 2864 215 263 147 0 chr6 62985428 62985523 -119429719 - L2 LINE L2 -1293 2021 1913 214 368 84 0 chr6 62985531 62985770 -119429472 - L2 LINE L2 -712 2602 2344 593 184 9 0 chr6 62986682 62986791 -119428451 - MER20 DNA MER1_type 0 219 110 716 318 171 8 chr6 62986959 62987620 -119427622 - L2 LINE L2 -591 2723 1955 885 261 23 43 chr6 62987621 62987878 -119427364 - MIR SINE MIR 0 262 11 2745 73 11 11 chr6 62988298 62988668 -119426574 + THE1C LTR MaLR 3 372 -3 947 193 5 67 chr6 62988900 62989123 -119426119 + MIR SINE MIR 54 262 0 1655 62 45 0 chr6 62989514 62989738 -119425504 + L1PA8 LINE L1 5939 6172 0 1507 202 28 3 chr6 62989751 62990038 -119425204 + AluJo SINE Alu 1 294 -18 1729 191 23 3 chr6 62991235 62991539 -119423703 - AluJb SINE Alu -2 310 1 2016 154 0 0 chr6 62992385 62992684 -119422558 + AluSx SINE Alu 1 299 -13 2157 103 10 10 chr6 62992841 62993141 -119422101 - AluSx SINE Alu -12 300 1 1996 139 23 49 chr6 62993741 62994085 -119421157 - MER1B DNA MER1_type 0 337 3 9938 197 59 55 chr6 62994134 62995388 -119419854 - L1MB5 LINE L1 -8 6402 5155 2089 118 70 17 chr6 62995388 62995744 -119419498 + THE1C LTR MaLR 1 375 0 9938 197 59 55 chr6 62995744 62996307 -119418935 - L1MB5 LINE L1 -1255 5155 4596 729 97 303 0 chr6 62996307 62996452 -119418790 - AluY SINE Alu -1 310 122 9938 197 59 55 chr6 62996452 62996840 -119418402 - L1MB5 LINE L1 -1814 4596 4211 2317 88 0 23 chr6 62996840 62997145 -119418097 + AluSg SINE Alu 1 298 -12 9938 197 59 55 chr6 62997145 62999149 -119416093 - L1MB5 LINE L1 -2199 4211 2035 739 259 104 27 chr6 62999154 62999605 -119415637 - HAL1 LINE L1 -836 1671 1186 3212 164 40 27 chr6 62999732 63000437 -119414805 - L1MA8 LINE L1 -10 6281 5568 916 174 60 0 chr6 63000438 63000605 -119414637 + AluJo SINE Alu 115 291 -21 316 273 34 0 chr6 63000608 63000696 -119414546 + MIR SINE MIR 142 232 -30 40423 36 23 1 chr6 63000808 63006811 -119408431 + L1PA3 LINE L1 22 6155 0 27 0 0 0 chr6 63006921 63006948 -119408294 + AT_rich Low_complexity Low_complexity 1 27 0 1015 170 280 24 chr6 63009688 63010059 -119405183 - MER31B LTR ERV1 0 466 1 1820 158 3 30 chr6 63011105 63011403 -119403839 - AluSx SINE Alu -19 293 4 315 0 0 0 chr6 63011414 63011449 -119403793 + (TG)n Simple_repeat Simple_repeat 2 36 0 3824 123 2 22 chr6 63011554 63012187 -119403055 - MER41B LTR ERV1 -1 634 15 2267 95 0 10 chr6 63012265 63012559 -119402683 - AluSg SINE Alu -19 291 1 421 239 60 60 chr6 63013314 63013408 -119401834 - MIR SINE MIR -2 260 164 1722 177 18 0 chr6 63013408 63013685 -119401557 - AluJo SINE Alu -30 282 1 421 239 60 60 chr6 63013685 63013757 -119401485 - MIR SINE MIR -97 165 94 31 0 0 0 chr6 63014286 63014317 -119400925 + AT_rich Low_complexity Low_complexity 1 31 0 1044 264 93 64 chr6 63014494 63014689 -119400553 + MER20B DNA MER1_type 1 189 -595 2198 105 10 0 chr6 63014689 63014985 -119400257 - AluSc SINE Alu -10 299 1 1044 264 93 64 chr6 63014985 63015550 -119399692 + MER20B DNA MER1_type 189 783 -1 28 48 0 0 chr6 63016285 63016327 -119398915 + AT_rich Low_complexity Low_complexity 1 42 0 1090 166 67 14 chr6 63017072 63017295 -119397947 - MER46A DNA MER2_type -1 235 1 190 367 124 17 chr6 63017388 63017799 -119397443 - L2 LINE L2 -698 2616 2162 661 269 12 0 chr6 63017835 63018006 -119397236 + MIR SINE MIR 86 258 -4 2192 114 0 0 chr6 63018182 63018479 -119396763 - AluSg SINE Alu -13 297 1 189 0 0 0 chr6 63019080 63019101 -119396141 + (A)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 63019636 63019657 -119395585 + AT_rich Low_complexity Low_complexity 1 21 0 212 182 0 18 chr6 63020133 63020188 -119395054 + CT-rich Low_complexity Low_complexity 1 54 0 2322 103 10 6 chr6 63020962 63021274 -119393968 + AluSq SINE Alu 1 313 0 1747 154 38 20 chr6 63021589 63021882 -119393360 - AluJb SINE Alu -14 298 1 735 232 114 25 chr6 63022081 63022318 -119392924 + MIR SINE MIR 5 262 0 218 416 0 0 chr6 63022785 63022862 -119392380 + L2 LINE L2 2531 2607 -707 2266 106 3 0 chr6 63022869 63023171 -119392071 - AluSg SINE Alu -7 303 1 419 349 177 23 chr6 63023173 63023537 -119391705 + L2 LINE L2 2662 3138 -134 2184 91 14 7 chr6 63023537 63023834 -119391408 - AluSq SINE Alu -14 299 1 419 349 177 23 chr6 63023834 63023994 -119391248 + L2 LINE L2 3138 3272 0 24 77 0 0 chr6 63024664 63024716 -119390526 + AT_rich Low_complexity Low_complexity 1 52 0 1498 241 38 87 chr6 63024783 63024874 -119390368 + MLT1H1 LTR MaLR 5 99 -456 891 144 53 5 chr6 63024874 63025062 -119390180 - L1MB3 LINE L1 -7 6176 5980 1498 241 38 87 chr6 63025062 63025548 -119389694 + MLT1H1 LTR MaLR 99 554 -1 889 281 69 31 chr6 63029424 63030331 -119384911 - L1MEd LINE L1 -4612 1517 586 23 92 0 0 chr6 63031036 63031101 -119384141 + AT_rich Low_complexity Low_complexity 1 65 0 229 339 65 86 chr6 63031589 63031618 -119383624 - L2 LINE L2 -43 3229 3201 1786 140 57 23 chr6 63031618 63031918 -119383324 + AluJo SINE Alu 1 310 -2 229 339 65 86 chr6 63031918 63032271 -119382971 - L2 LINE L2 -71 3201 2855 520 195 0 0 chr6 63032603 63032690 -119382552 - MER81 DNA DNA -27 87 1 1267 284 131 11 chr6 63033460 63033917 -119381325 - MLT1H1 LTR MaLR -36 519 8 225 244 49 61 chr6 63034241 63034323 -119380919 - MER5A DNA MER1_type -75 114 34 420 213 37 19 chr6 63034616 63034724 -119380518 + Charlie7 DNA MER1_type 2503 2612 0 * 1060 293 57 12 chr6 63034722 63035057 -119380185 - MLT1I LTR MaLR 0 409 60 499 312 58 0 chr6 63035872 63036026 -119379216 - MIR SINE MIR -12 250 88 2182 109 3 13 chr6 63036634 63036938 -119378304 - AluSx SINE Alu -11 301 1 23 0 0 0 chr6 63037562 63037585 -119377657 + AT_rich Low_complexity Low_complexity 1 23 0 282 290 93 0 chr6 63038296 63038403 -119376839 + MIR SINE MIR 119 235 -27 10098 125 18 10 chr6 63038508 63040214 -119375028 - L1PA11 LINE L1 -116 6058 4368 2471 25 4 0 chr6 63040214 63040532 -119374710 - AluY SINE Alu 0 319 1 1977 138 17 0 chr6 63040535 63040826 -119374416 - AluSx SINE Alu -16 296 1 10098 125 18 10 chr6 63040826 63041520 -119373722 - L1PA11 LINE L1 -1807 4367 3642 617 144 0 0 chr6 63041524 63041614 -119373628 - FRAM SINE Alu -44 132 43 245 171 0 24 chr6 63041672 63041713 -119373529 - FRAM SINE Alu -131 34 1 618 239 0 23 chr6 63041734 63041864 -119373378 + AluJo/FLAM SINE Alu 5 131 -171 1055 190 115 82 chr6 63041865 63042134 -119373108 + AluJb SINE Alu 1 278 -34 631 193 0 8 chr6 63042134 63042253 -119372989 - FLAM_A SINE Alu -15 118 1 510 245 5 34 chr6 63042262 63042470 -119372772 - L1ME LINE L1 -688 5457 5256 * 1202 253 58 35 chr6 63042454 63042813 -119372429 - L1ME LINE L1 -1460 4669 4293 2087 111 3 41 chr6 63042813 63043128 -119372114 - AluSg SINE Alu -7 303 1 1202 253 58 35 chr6 63043128 63043286 -119371956 - L1ME LINE L1 -1836 4293 4140 366 268 25 23 chr6 63043690 63043989 -119371253 - ALR/Alpha Satellite centromeric -22 299 1 1890 162 6 16 chr6 63043991 63044306 -119370936 - AluJo SINE Alu 0 312 1 458 272 59 0 chr6 63044501 63044637 -119370605 - L1ME LINE L1 -5443 676 533 189 0 0 0 chr6 63044750 63044771 -119370471 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 252 274 105 24 chr6 63044824 63045115 -119370127 - L1ME LINE L1 -338 5783 5414 334 321 30 71 chr6 63046803 63046971 -119368271 - MIR3 SINE MIR -6 202 42 817 253 96 78 chr6 63049399 63049846 -119365396 + MLT1L LTR MaLR 151 605 -10 1367 174 124 57 chr6 63050131 63050501 -119364741 - MLT1C LTR MaLR -86 381 1 24 32 0 0 chr6 63051268 63051299 -119363943 + AT_rich Low_complexity Low_complexity 1 31 0 1524 242 88 8 chr6 63051342 63051821 -119363421 - L1MC4 LINE L1 -142 7900 7384 565 220 60 44 chr6 63051834 63052016 -119363226 - L1ME LINE L1 -398 5772 5588 1848 157 30 3 chr6 63052044 63052167 -119363075 + AluJo SINE Alu 1 119 -209 348 24 0 0 chr6 63052167 63052208 -119363034 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1848 157 30 3 chr6 63052208 63052404 -119362838 + AluJo SINE Alu 119 328 0 282 380 67 49 chr6 63053011 63053235 -119362007 + L2 LINE L2 3036 3263 -9 390 327 7 20 chr6 63053299 63053452 -119361790 - MIR SINE MIR -75 187 37 285 175 138 12 chr6 63053542 63053622 -119361620 - LTR41 LTR ERVL -676 97 8 337 339 18 18 chr6 63053741 63053853 -119361389 - L2 LINE L2 -42 3271 3160 1013 311 74 37 chr6 63053864 63054392 -119360850 - L2 LINE L2 -302 3011 2465 729 282 172 0 chr6 63054424 63054633 -119360609 - MIR SINE MIR -16 246 2 438 368 26 0 chr6 63054633 63054826 -119360416 - L2 LINE L2 -859 2455 2258 1586 188 0 34 chr6 63055035 63055355 -119359887 - AluJb SINE Alu -3 309 1 517 101 13 0 chr6 63056073 63056152 -119359090 + MADE1 DNA Mariner 1 80 0 6299 91 26 14 chr6 63056330 63058318 -119356924 - L1PA14 LINE L1 0 6161 4150 22 0 0 0 chr6 63058599 63058621 -119356621 + AT_rich Low_complexity Low_complexity 1 22 0 15225 192 23 7 chr6 63058621 63063657 -119351585 - L1PB1 LINE L1 -2 6865 1729 10941 163 23 45 chr6 63063660 63063837 -119351405 - L1PA12 LINE L1 -2936 4648 4469 339 42 0 0 chr6 63063837 63063885 -119351357 - AluSc SINE Alu -2 297 250 2215 111 3 3 chr6 63063892 63064198 -119351044 - AluSc SINE Alu -3 306 1 10941 163 23 45 chr6 63064198 63064959 -119350283 - L1PA12 LINE L1 -3121 4463 3687 212 59 29 0 chr6 63064959 63064993 -119350249 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7187 50 0 12 chr6 63064993 63065901 -119349341 - L1PA5 LINE L1 -12 6142 5237 10941 163 23 45 chr6 63065901 63068262 -119346980 - L1PA12 LINE L1 -3895 3689 1368 2277 93 0 19 chr6 63069190 63069502 -119345740 - AluY SINE Alu -5 306 1 374 223 64 10 chr6 63069783 63069936 -119345306 - MLT1A2 LTR MaLR 0 374 163 215 309 111 12 chr6 63070277 63070358 -119344884 + L2 LINE L2 3160 3248 -24 182 250 0 0 chr6 63071643 63071683 -119343559 - L2 LINE L2 -9 3263 3224 201 156 0 0 chr6 63071834 63071866 -119343376 + (CAT)n Simple_repeat Simple_repeat 3 34 0 27 29 0 0 chr6 63072689 63072723 -119342519 + AT_rich Low_complexity Low_complexity 1 34 0 455 91 15 0 chr6 63073423 63073489 -119341753 - MER41A LTR ERV1 -90 464 398 442 285 99 7 chr6 63073772 63073923 -119341319 - MIR SINE MIR -14 248 84 2021 128 7 3 chr6 63074074 63074380 -119340862 - LTR9B LTR ERV1 0 644 338 709 258 6 0 chr6 63074483 63074661 -119340581 - L1ME1 LINE L1 -151 6015 5837 1224 181 14 14 chr6 63074664 63074880 -119340362 - AluJo SINE Alu -24 288 73 22 35 0 0 chr6 63074935 63074964 -119340278 + AT_rich Low_complexity Low_complexity 1 29 0 1416 188 101 58 chr6 63074965 63075120 -119340122 - L1ME1 LINE L1 -345 5821 5674 2237 85 7 3 chr6 63075120 63075414 -119339828 - AluY SINE Alu -16 295 1 1416 188 101 58 chr6 63075414 63075656 -119339586 - L1ME1 LINE L1 -492 5674 5407 1467 216 81 43 chr6 63075659 63075978 -119339264 - L1ME1 LINE L1 -905 5241 4891 2147 99 3 40 chr6 63075978 63076302 -119338940 + AluSx SINE Alu 1 312 0 1467 216 81 43 chr6 63076302 63076538 -119338704 - L1ME1 LINE L1 -1255 4891 4665 1176 249 30 9 chr6 63076534 63076863 -119338379 - L1ME1 LINE L1 -1847 4299 3964 * 1978 141 89 14 chr6 63076887 63077248 -119337994 + MSTA LTR MaLR 1 388 -40 1364 187 66 4 chr6 63077254 63077511 -119337731 + AluJb SINE Alu 6 278 -34 601 237 154 13 chr6 63077512 63077793 -119337449 - L1M4 LINE L1 -2227 3919 3611 37 23 0 0 chr6 63077936 63077980 -119337262 + AT_rich Low_complexity Low_complexity 1 44 0 388 229 99 93 chr6 63078098 63078452 -119336790 - L1ME4a LINE L1 -181 5940 5585 494 161 11 0 chr6 63079353 63079446 -119335796 - HSMAR1 DNA Mariner -1193 94 1 250 318 0 0 chr6 63080250 63080316 -119334926 + L2 LINE L2 3202 3267 -5 11924 132 25 15 chr6 63081222 63082898 -119332344 - Tigger1 DNA MER2_type 0 2418 632 2382 107 0 0 chr6 63082898 63083207 -119332035 - AluSx SINE Alu -3 309 1 11924 132 25 15 chr6 63083207 63083846 -119331396 - Tigger1 DNA MER2_type -1786 632 1 2449 73 3 16 chr6 63084327 63084640 -119330602 - AluSc SINE Alu 0 309 1 22 56 0 0 chr6 63084647 63084683 -119330559 + AT_rich Low_complexity Low_complexity 1 36 0 199 374 86 0 chr6 63084969 63085132 -119330110 - L2 LINE L2 -582 2732 2556 23 0 0 0 chr6 63085709 63085732 -119329510 + AT_rich Low_complexity Low_complexity 1 23 0 2212 116 0 0 chr6 63086163 63086455 -119328787 + AluSg SINE Alu 1 292 -18 272 191 32 16 chr6 63086466 63086529 -119328713 + LTR67 LTR ERVL 448 511 -46 362 273 143 39 chr6 63086733 63087127 -119328115 - L2 LINE L2 -935 2379 1900 2011 110 62 0 chr6 63088086 63088377 -119326865 - AluSx SINE Alu -3 309 1 180 111 0 0 chr6 63090929 63090956 -119324286 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2014 72 80 4 chr6 63091191 63091455 -119323787 - AluSc SINE Alu -25 284 1 882 280 42 31 chr6 63092029 63092383 -119322859 - L1ME2 LINE L1 -16 6148 5791 868 208 68 14 chr6 63092394 63092615 -119322627 + L1ME LINE L1 5319 5551 -613 510 217 0 0 chr6 63092618 63092724 -119322518 + L1ME LINE L1 5677 5782 -384 2033 120 14 0 chr6 63093267 63093558 -119321684 - AluSx SINE Alu -17 295 1 335 221 15 15 chr6 63094587 63094655 -119320587 + LTR67 LTR ERVL 403 470 -87 1069 234 176 16 chr6 63094670 63095051 -119320191 - L1MD2 LINE L1 -12 6347 5906 1850 171 139 19 chr6 63095051 63095467 -119319775 - MER31B LTR ERV1 0 466 1 1059 140 19 128 chr6 63095477 63095729 -119319513 + MLT1B LTR MaLR 9 232 -158 303 125 0 36 chr6 63095729 63095785 -119319457 - MLT1A2 LTR MaLR 0 374 321 484 183 7 65 chr6 63095788 63095930 -119319312 - L1MD2 LINE L1 -690 5476 5335 2280 105 0 22 chr6 63096384 63096699 -119318543 - AluSx SINE Alu -2 310 3 1545 164 39 18 chr6 63097313 63097599 -119317643 + AluJo SINE Alu 3 294 -18 24 0 0 0 chr6 63098511 63098535 -119316707 + AT_rich Low_complexity Low_complexity 1 24 0 819 202 79 6 chr6 63098932 63099110 -119316132 + MER58A DNA MER1_type 1 191 -33 1673 45 0 0 chr6 63099181 63099382 -119315860 - L1PA3 LINE L1 -2 6153 5953 527 251 164 12 chr6 63099789 63099865 -119315377 + MIR SINE MIR 32 95 -167 2301 94 3 3 chr6 63099865 63100163 -119315079 - AluSp SINE Alu -13 300 3 527 251 164 12 chr6 63100163 63100257 -119314985 + MIR SINE MIR 95 228 -34 1655 169 22 35 chr6 63100711 63101024 -119314218 - AluJb SINE Alu -1 311 3 198 231 0 0 chr6 63101065 63101104 -119314138 + MER5A DNA MER1_type 148 186 -3 759 132 23 8 chr6 63101669 63101798 -119313444 - MER67B LTR ERV1 0 661 531 2310 168 42 0 chr6 63102876 63103286 -119311956 - MSTA LTR MaLR 0 428 2 1839 154 31 0 chr6 63103603 63103895 -119311347 - AluJb SINE Alu -9 303 3 954 72 7 29 chr6 63104707 63104845 -119310397 - AluSq SINE Alu -10 303 169 659 122 10 0 chr6 63104847 63104945 -119310297 - AluSq SINE Alu -211 102 4 2197 123 3 0 chr6 63105345 63105655 -119309587 - AluSx SINE Alu -1 311 1 21 0 0 0 chr6 63105887 63105908 -119309334 + AT_rich Low_complexity Low_complexity 1 21 0 401 260 31 8 chr6 63105942 63106069 -119309173 - L1ME4a LINE L1 -3 6118 5989 612 200 0 0 chr6 63106218 63106333 -119308909 - FRAM SINE Alu 0 176 62 352 287 120 6 chr6 63107557 63107724 -119307518 - LTR37B LTR ERV1 -85 383 198 4479 167 44 27 chr6 63108614 63110047 -119305195 - L1MA7 LINE L1 0 6291 4812 2367 94 0 0 chr6 63110227 63110524 -119304718 + AluSg SINE Alu 1 297 -13 256 217 48 36 chr6 63111131 63111214 -119304028 - MIR3 SINE MIR -3 205 122 436 242 170 50 chr6 63111214 63111396 -119303846 - L1MC4a LINE L1 -1162 6646 6443 1076 137 12 0 chr6 63112356 63112517 -119302725 - AluSg/x SINE Alu -12 298 136 1667 191 31 14 chr6 63114334 63114691 -119300551 - MER4D LTR ERV1 0 903 541 1806 140 31 3 chr6 63114718 63115004 -119300238 - MER49 LTR ERV1 -629 294 1 285 294 34 54 chr6 63116480 63116684 -119298558 + L2 LINE L2 2260 2459 -855 1546 149 23 179 chr6 63116691 63117290 -119297952 + L1MC4a LINE L1 6049 6554 -1254 356 122 47 28 chr6 63117347 63117454 -119297788 + (TGG)n Simple_repeat Simple_repeat 2 110 0 1993 204 19 33 chr6 63117478 63117959 -119297283 + L1MC4a LINE L1 6613 7086 -722 1831 137 3 65 chr6 63117961 63118282 -119296960 + AluSx SINE Alu 4 304 -8 23 0 0 0 chr6 63119785 63119808 -119295434 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr6 63120043 63120064 -119295178 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 1923 114 0 62 chr6 63120065 63120373 -119294869 - AluSx SINE Alu -23 289 1 265 325 42 17 chr6 63121783 63121903 -119293339 - L2 LINE L2 -1 3271 3149 238 208 19 19 chr6 63123303 63123356 -119291886 - LTR33 LTR ERVL -1 520 468 534 122 0 0 chr6 63123357 63123431 -119291811 + AluS SINE Alu 1 74 -237 2031 152 3 7 chr6 63175282 63175592 -119239650 - AluSx SINE Alu -3 309 1 27067 41 1 5 chr6 63175929 63182092 -119233150 - L1PA4 LINE L1 -2 6153 13 468 282 120 4 chr6 63182278 63182589 -119232653 - MLT1I LTR MaLR 0 409 37 2268 113 0 3 chr6 63182602 63182912 -119232330 + AluSq SINE Alu 5 313 0 264 264 107 8 chr6 63183138 63183259 -119231983 + MLT1I LTR MaLR 280 439 -7 610 307 71 5 chr6 63183262 63183474 -119231768 + MIR SINE MIR 26 251 -11 266 301 87 29 chr6 63183506 63183609 -119231633 + L3 LINE CR1 1437 1545 -32 1653 191 36 8 chr6 63183768 63184125 -119231117 - MLT2C2 LTR ERVL -94 370 4 214 303 53 13 chr6 63186077 63186153 -119229089 + MIR SINE MIR 1 79 -183 181 299 46 35 chr6 63187296 63187383 -119227859 + MIR3 SINE MIR 2 89 -119 1751 190 3 3 chr6 63187408 63187718 -119227524 + AluJb SINE Alu 1 310 -2 486 301 86 75 chr6 63188094 63188466 -119226776 + L2 LINE L2 2857 3236 -77 1976 163 3 0 chr6 63188466 63188773 -119226469 - AluSg SINE Alu -2 308 1 486 301 86 75 chr6 63188773 63188852 -119226390 + L2 LINE L2 3236 3313 0 253 240 0 0 chr6 63188915 63188965 -119226277 - MIR SINE MIR 0 262 213 450 244 32 16 chr6 63189011 63189134 -119226108 - MIR SINE MIR -28 234 110 476 256 133 98 chr6 63189315 63189714 -119225528 + LTR67 LTR ERVL 2 414 -143 901 190 9 75 chr6 63189740 63189966 -119225276 + MIR SINE MIR 21 231 -31 7114 47 35 0 chr6 63190020 63191029 -119224213 - L1PA7 LINE L1 -2 6152 5135 1440 109 76 0 chr6 63191047 63191258 -119223984 + AluSp SINE Alu 83 309 -4 9840 100 6 5 chr6 63191258 63192772 -119222470 - L1P LINE L1 -1000 5146 3632 273 238 0 0 chr6 63194527 63194607 -119220635 + CT-rich Low_complexity Low_complexity 2 81 0 1953 84 0 0 chr6 63196286 63196525 -119218717 + AluSq SINE Alu 1 239 -74 231 114 0 0 chr6 63196532 63196567 -119218675 + (A)n Simple_repeat Simple_repeat 1 35 0 455 271 166 20 chr6 63197547 63197698 -119217544 + MER5B DNA MER1_type 1 173 -5 2361 59 3 13 chr6 63198313 63198616 -119216626 - AluY SINE Alu -11 300 1 201 74 0 0 chr6 63198775 63198802 -119216440 + (CTG)n Simple_repeat Simple_repeat 1 27 0 281 130 169 39 chr6 63198802 63198879 -119216363 + MSTC LTR MaLR 9 95 -333 186 246 136 51 chr6 63198882 63199000 -119216242 - MIR SINE MIR -97 165 38 2076 138 44 5 chr6 63199346 63199731 -119215511 - L1MB8 LINE L1 0 6178 5779 195 284 68 23 chr6 63199811 63199899 -119215343 - MIR SINE MIR -60 148 57 262 324 38 9 chr6 63199913 63200018 -119215224 - L2 LINE L2 -7 3306 3199 1224 111 6 0 chr6 63200893 63201064 -119214178 - AluSp SINE Alu -5 308 137 1548 178 7 25 chr6 63201167 63201448 -119213794 - AluJo SINE Alu -36 276 1 307 274 116 21 chr6 63202196 63202291 -119212951 - MIR SINE MIR -74 188 85 904 180 0 44 chr6 63202473 63202656 -119212586 - FRAM SINE Alu -2 174 1 443 216 54 18 chr6 63202817 63202928 -119212314 + MIR SINE MIR 29 143 -119 2151 119 3 0 chr6 63203015 63203310 -119211932 + AluSp SINE Alu 1 296 -17 803 236 46 19 chr6 63204431 63204690 -119210552 - L1MD2 LINE L1 -11 6348 6083 318 211 118 75 chr6 63204679 63204774 -119210468 - L1MD1 LINE L1 -181 6061 5955 * 2075 140 3 0 chr6 63204774 63205074 -119210168 - AluSc SINE Alu -8 301 1 318 211 118 75 chr6 63205074 63205139 -119210103 - L1MD1 LINE L1 -287 5955 5894 566 193 13 33 chr6 63205144 63205294 -119209948 - L1MD3 LINE L1 -18 7977 7831 * 2841 182 81 48 chr6 63205292 63206029 -119209213 - L1MD2 LINE L1 -212 6147 5386 204 327 63 19 chr6 63206340 63206499 -119208743 - L2 LINE L2 -942 2372 2207 193 231 88 44 chr6 63206744 63206835 -119208407 - L2 LINE L2 -1605 1709 1615 2181 102 7 0 chr6 63207071 63207365 -119207877 - AluSx SINE Alu -14 298 3 262 272 79 53 chr6 63208611 63208725 -119206517 + L2 LINE L2 2737 2853 -461 532 265 209 64 chr6 63208815 63209189 -119206053 + L2 LINE L2 2883 3310 -3 183 311 118 30 chr6 63209935 63210070 -119205172 - L2 LINE L2 0 3313 3167 365 33 0 100 chr6 63210422 63210482 -119204760 - MER85 DNA T2_type 0 139 86 774 81 121 0 chr6 63210484 63210608 -119204634 - MER85 DNA T2_type 0 139 1 1901 124 0 0 chr6 63211485 63211750 -119203492 - AluSq SINE Alu -48 265 1 419 213 146 10 chr6 63212226 63212342 -119202900 - MIR SINE MIR -61 147 25 318 295 45 0 chr6 63212800 63212912 -119202330 - MER70B LTR ERVL -17 561 445 2399 76 0 10 chr6 63213500 63213804 -119201438 + AluY SINE Alu 1 301 -10 309 260 97 39 chr6 63214791 63214945 -119200297 + L1MDa LINE L1 1254 1416 -5124 857 141 23 0 chr6 63214997 63215125 -119200117 - FLAM_C SINE Alu -2 131 1 256 317 11 27 chr6 63215129 63215312 -119199930 + L1MDa LINE L1 1467 1646 -4884 3199 145 10 2 chr6 63215881 63216378 -119198864 - MER61D LTR ERV1 0 501 1 1174 149 164 7 chr6 63216451 63216499 -119198743 - MER33 DNA MER1_type -2266 319 280 2307 94 0 3 chr6 63216499 63216797 -119198445 + AluSx SINE Alu 16 312 0 1174 149 164 7 chr6 63216797 63217023 -119198219 - MER33 DNA MER1_type -2305 280 2 371 292 109 22 chr6 63217296 63217433 -119197809 + L2 LINE L2 2301 2449 -865 1871 162 3 20 chr6 63219978 63220281 -119194961 - AluJo SINE Alu -14 298 1 1078 205 144 47 chr6 63223608 63224017 -119191225 + MER39 LTR ERV1 259 707 0 251 340 196 21 chr6 63224103 63224568 -119190674 + L2 LINE L2 2188 2733 -581 2904 137 46 4 chr6 63224654 63225179 -119190063 - LTR24B LTR ERV1 -5 571 25 2364 102 0 0 chr6 63225546 63225859 -119189383 - AluSq SINE Alu 0 313 1 4115 150 71 6 chr6 63226380 63227058 -119188184 + MER72 LTR ERV1 1 722 0 529 280 32 32 chr6 63227351 63227540 -119187702 - L2 LINE L2 -3 3310 3122 2152 124 0 23 chr6 63227727 63228033 -119187209 + AluSx SINE Alu 1 299 -13 365 277 0 0 chr6 63228134 63228217 -119187025 - L2 LINE L2 -257 3056 2974 197 333 17 0 chr6 63228375 63228435 -119186807 + MIR3 SINE MIR 125 185 -23 461 78 13 13 chr6 63228469 63228546 -119186696 - L1PB4 LINE L1 0 6156 6080 309 357 117 9 chr6 63229802 63230015 -119185227 - L2 LINE L2 -518 2796 2561 23 33 0 0 chr6 63230979 63231009 -119184233 + AT_rich Low_complexity Low_complexity 1 30 0 300 202 154 58 chr6 63232065 63232169 -119183073 - L1ME4a LINE L1 -1 6120 6007 2127 119 3 0 chr6 63232206 63232500 -119182742 - AluSx SINE Alu -17 295 1 225 65 0 0 chr6 63232507 63232538 -119182704 + (TTG)n Simple_repeat Simple_repeat 2 32 0 574 262 95 41 chr6 63232557 63232851 -119182391 - L1ME4a LINE L1 -219 5902 5593 295 286 0 0 chr6 63233322 63233399 -119181843 + T-rich Low_complexity Low_complexity 4 80 0 54 56 0 0 chr6 63234033 63234122 -119181120 + AT_rich Low_complexity Low_complexity 1 89 0 252 188 35 12 chr6 63234127 63234212 -119181030 + (TA)n Simple_repeat Simple_repeat 2 88 0 322 304 125 55 chr6 63234249 63234538 -119180704 + L2 LINE L2 3005 3313 0 507 316 17 66 chr6 63235965 63236266 -119178976 - L2 LINE L2 -880 2434 2149 2222 121 3 0 chr6 63236856 63237163 -119178079 - AluSx SINE Alu 0 312 5 1927 116 73 0 chr6 63237882 63238157 -119177085 + AluSx SINE Alu 1 295 -17 1871 229 122 40 chr6 63240047 63240620 -119174622 - MLT1E2 LTR MaLR 0 626 7 1014 194 0 28 chr6 63241703 63241914 -119173328 + MER3 DNA MER1_type 5 209 0 28 29 0 0 chr6 63241930 63241965 -119173277 + AT_rich Low_complexity Low_complexity 1 35 0 513 304 80 57 chr6 63242594 63242857 -119172385 + L2 LINE L2 3029 3297 -16 249 108 0 0 chr6 63242857 63242894 -119172348 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 8625 50 6 1 chr6 63243198 63244264 -119170978 - MER11C LTR ERVK 0 1071 1 421 178 16 0 chr6 63244946 63245038 -119170204 - L1ME1 LINE L1 -1 6183 6084 25 0 0 0 chr6 63246714 63246739 -119168503 + AT_rich Low_complexity Low_complexity 1 25 0 946 162 35 53 chr6 63246743 63246798 -119168444 - MER33 DNA MER1_type -2349 236 182 660 207 0 22 chr6 63246798 63246933 -119168309 - FLAM_A SINE Alu -1 132 1 946 162 35 53 chr6 63246933 63247105 -119168137 - MER33 DNA MER1_type -2403 182 13 276 290 74 74 chr6 63247440 63247602 -119167640 - MIR SINE MIR -30 232 71 2354 89 3 9 chr6 63248701 63249016 -119166226 + AluSp SINE Alu 1 313 0 21 0 0 0 chr6 63249280 63249301 -119165941 + AT_rich Low_complexity Low_complexity 1 21 0 204 322 139 26 chr6 63251735 63251850 -119163392 + MIR SINE MIR 17 144 -64 297 330 101 29 chr6 63251956 63252165 -119163077 - MIR SINE MIR -21 241 18 21 36 0 0 chr6 63252444 63252472 -119162770 + AT_rich Low_complexity Low_complexity 1 28 0 1328 236 97 17 chr6 63252866 63253218 -119162024 - MLT1B LTR MaLR 0 390 11 585 213 126 17 chr6 63253815 63253989 -119161253 - L2 LINE L2 0 3313 3121 585 350 107 12 chr6 63254102 63254531 -119160711 + L2 LINE L2 289 758 -2556 604 325 167 7 chr6 63254573 63255189 -119160053 + L2 LINE L2 2599 3313 0 220 364 37 21 chr6 63255196 63255383 -119159859 - L2 LINE L2 -217 3055 2866 2120 125 0 10 chr6 63255642 63255955 -119159287 + AluSx SINE Alu 1 310 -2 244 303 0 61 chr6 63256167 63256266 -119158976 - L2 LINE L2 -1531 1783 1691 3282 186 72 13 chr6 63256514 63257223 -119158019 + L1MD2 LINE L1 5598 6351 -8 341 146 73 0 chr6 63257228 63257324 -119157918 - Charlie5 DNA MER1_type -106 2506 2404 1407 166 39 50 chr6 63258070 63258353 -119156889 - AluJo SINE Alu -19 293 14 1725 188 36 29 chr6 63258655 63259039 -119156203 - MLT1B LTR MaLR 0 390 4 470 214 63 19 chr6 63259376 63259535 -119155707 - L1ME4a LINE L1 -250 5871 5706 303 28 0 0 chr6 63259607 63259643 -119155599 + (TG)n Simple_repeat Simple_repeat 1 36 0 2188 119 0 0 chr6 63259680 63259983 -119155259 + AluSx SINE Alu 1 303 -9 225 163 0 0 chr6 63260218 63260267 -119154975 + (CA)n Simple_repeat Simple_repeat 2 50 0 597 246 8 0 chr6 63260293 63260411 -119154831 - MLT2B1 LTR ERVL -90 430 312 4332 146 36 7 chr6 63260413 63261144 -119154098 + Tigger2 DNA MER2_type 2 753 -1965 977 105 0 0 chr6 63261233 63261366 -119153876 - AluSq/x SINE Alu -179 133 1 1056 155 19 101 chr6 63261368 63261626 -119153616 + Tigger2 DNA MER2_type 2481 2717 -1 904 225 21 77 chr6 63261643 63261928 -119153314 - MLT2D LTR ERVL -120 294 26 2227 94 3 23 chr6 63261944 63262252 -119152990 - AluSx SINE Alu -10 302 1 21 57 0 0 chr6 63262544 63262579 -119152663 + AT_rich Low_complexity Low_complexity 1 35 0 2971 89 80 0 chr6 63263700 63264150 -119151092 - LTR19A LTR ERV1 0 486 1 757 261 16 11 chr6 63264327 63264511 -119150731 + L2 LINE L2 3129 3313 0 326 152 0 0 chr6 63264749 63264795 -119150447 + MER5A DNA MER1_type 33 78 -111 256 220 0 0 chr6 63264914 63264964 -119150278 + (TA)n Simple_repeat Simple_repeat 2 51 0 2212 96 0 10 chr6 63265106 63265397 -119149845 - AluSp SINE Alu -25 288 1 37 23 0 0 chr6 63266193 63266237 -119149005 + AT_rich Low_complexity Low_complexity 1 44 0 33 0 0 0 chr6 63266896 63266929 -119148313 + AT_rich Low_complexity Low_complexity 1 33 0 1174 132 132 0 chr6 63266929 63267149 -119148093 - L1PA16 LINE L1 -9 6157 5909 629 162 155 47 chr6 63267616 63267764 -119147478 + MER5A DNA MER1_type 26 189 0 1002 166 36 20 chr6 63267779 63267982 -119147260 - MSTC LTR MaLR 0 428 216 324 304 54 9 chr6 63268259 63268371 -119146871 + L2 LINE L2 3196 3312 -1 343 325 25 8 chr6 63268650 63268770 -119146472 - MIR SINE MIR -18 244 123 240 311 161 33 chr6 63268900 63269080 -119146162 - MIR SINE MIR -37 225 23 2143 82 4 0 chr6 63269496 63269766 -119145476 + AluSp SINE Alu 13 283 -30 23 0 0 0 chr6 63270788 63270811 -119144431 + AT_rich Low_complexity Low_complexity 1 23 0 799 241 60 38 chr6 63271263 63271528 -119143714 - L2 LINE L2 -1 3312 3042 224 255 170 19 chr6 63271635 63271741 -119143501 - MIR SINE MIR -116 146 25 2051 137 0 0 chr6 63274954 63275247 -119139995 - AluSx SINE Alu -19 293 1 6164 97 20 1 chr6 63275701 63277456 -119137786 + L1PA14 LINE L1 4382 6161 0 547 279 87 37 chr6 63277694 63277924 -119137318 + MIR SINE MIR 3 248 -14 351 270 61 17 chr6 63277970 63278085 -119137157 - L2 LINE L2 -166 3106 2987 1779 162 24 10 chr6 63278521 63278817 -119136425 + AluJo SINE Alu 1 300 -12 12666 125 27 49 chr6 63279315 63280889 -119134353 - Tigger1 DNA MER2_type -2 2416 880 2083 116 3 7 chr6 63280889 63281199 -119134043 - AluSx SINE Alu -3 309 1 12666 125 27 49 chr6 63281199 63282052 -119133190 - Tigger1 DNA MER2_type -1538 880 9 966 219 30 104 chr6 63282107 63282435 -119132807 + L2 LINE L2 2155 2458 -856 42042 41 23 3 chr6 63282452 63288482 -119126760 - L1PA3 LINE L1 -1 6154 2 416 230 161 0 chr6 63288493 63288654 -119126588 + L2 LINE L2 2461 2647 -667 1921 112 7 62 chr6 63289354 63289658 -119125584 - AluSx SINE Alu -11 301 15 892 192 96 29 chr6 63290512 63290720 -119124522 - MER58A DNA MER1_type -1 223 2 1359 199 35 28 chr6 63291056 63291478 -119123764 - MLT2B1 LTR ERVL -53 467 1 398 250 65 84 chr6 63291493 63291996 -119123246 - L1MC5 LINE L1 -233 7728 7261 202 366 53 8 chr6 63292168 63292299 -119122943 - MIR SINE MIR -79 183 47 1048 225 28 40 chr6 63292501 63292750 -119122492 + MIR SINE MIR 1 246 -16 22 0 0 0 chr6 63292976 63292998 -119122244 + AT_rich Low_complexity Low_complexity 1 22 0 1443 139 56 4 chr6 63293002 63293253 -119121989 + Tigger5 DNA MER2_type 2059 2322 -1 306 305 73 30 chr6 63294808 63294972 -119120270 + MIR SINE MIR 92 262 0 2156 101 11 0 chr6 63295432 63295729 -119119513 - AluSc SINE Alu 0 300 1 260 135 162 40 chr6 63296321 63296395 -119118847 + MIR SINE MIR 180 262 0 2139 112 6 10 chr6 63297061 63297374 -119117868 + AluSx SINE Alu 1 312 0 704 207 0 89 chr6 63298641 63298820 -119116422 - FRAM SINE Alu -13 163 1 23 54 0 0 chr6 63299128 63299165 -119116077 + AT_rich Low_complexity Low_complexity 1 37 0 498 127 21 29 chr6 63299678 63299772 -119115470 + MER51A LTR ERV1 1 91 -286 905 245 88 36 chr6 63299812 63300187 -119115055 + MER51A LTR ERV1 257 640 0 288 259 0 25 chr6 63300527 63300608 -119114634 - MER116 DNA Mariner -1 79 1 402 254 16 16 chr6 63300718 63300840 -119114402 + L2 LINE L2 2244 2365 -949 2099 122 3 0 chr6 63301480 63301774 -119113468 - AluSq SINE Alu -18 295 1 446 329 80 14 chr6 63302880 63303093 -119112149 + MIR SINE MIR 6 232 -30 2379 90 3 0 chr6 63303095 63303396 -119111846 - AluSx SINE Alu -10 302 1 3936 201 80 32 chr6 63303402 63304432 -119110810 - L1MC4a LINE L1 0 7808 6730 33 43 0 0 chr6 63305330 63305377 -119109865 + AT_rich Low_complexity Low_complexity 1 47 0 553 178 20 125 chr6 63305453 63305605 -119109637 + AluJo SINE Alu 2 137 -175 1210 202 129 67 chr6 63305672 63306169 -119109073 - MER39 LTR ERV1 0 707 2 308 272 0 12 chr6 63307176 63307257 -119107985 - L2 LINE L2 -5 3267 3188 1018 158 64 6 chr6 63307299 63307470 -119107772 - AluJo SINE Alu -128 184 4 188 286 107 0 chr6 63307522 63307606 -119107636 + MIR3 SINE MIR 110 202 -6 23 33 0 0 chr6 63308105 63308135 -119107107 + AT_rich Low_complexity Low_complexity 1 30 0 3245 31 0 0 chr6 63308135 63308516 -119106726 - L1PA3 LINE L1 -5 6150 5770 225 0 0 0 chr6 63308517 63308542 -119106700 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4954 37 5 18 chr6 63308542 63308857 -119106385 - L1PA3 LINE L1 -18 6137 5832 2602 32 7 3 chr6 63308857 63309165 -119106077 - AluY SINE Alu -2 309 1 4954 37 5 18 chr6 63309165 63309465 -119105777 - L1PA3 LINE L1 -323 5832 5530 276 337 79 12 chr6 63309488 63309611 -119105631 + MIR SINE MIR 41 169 -68 273 29 0 0 chr6 63309707 63309741 -119105501 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 216 264 0 97 chr6 63310512 63310584 -119104658 - MIR SINE MIR -92 116 52 1470 199 42 102 chr6 63311002 63311474 -119103768 - MER31B LTR ERV1 -22 444 1 393 219 61 0 chr6 63311474 63311588 -119103654 - MER31B-int LTR ERV1 -20 4916 4796 358 301 72 58 chr6 63312852 63313046 -119102196 - MER31B-int LTR ERV1 -4093 2708 2518 2337 103 0 0 chr6 63313046 63313346 -119101896 + AluY SINE Alu 1 300 -11 358 301 72 58 chr6 63313346 63313531 -119101711 - MER31B-int LTR ERV1 -4283 2518 179 338 333 7 14 chr6 63314807 63314951 -119100291 - MER31B-int LTR ERV1 -5429 1372 1230 823 249 80 31 chr6 63315314 63315603 -119099639 - MER31B-int LTR ERV1 -4435 501 199 483 227 51 141 chr6 63315640 63315896 -119099346 - MER31B-int LTR ERV1 -4669 267 35 1483 169 56 93 chr6 63315965 63316449 -119098793 - MER31B LTR ERV1 0 466 1 566 330 48 0 chr6 63316452 63316640 -119098602 - MIR SINE MIR -32 230 34 3955 143 22 9 chr6 63317289 63317969 -119097273 + L1PA16 LINE L1 5465 6153 -13 2193 117 10 0 chr6 63318159 63318458 -119096784 + AluSx SINE Alu 1 302 -10 2220 96 31 0 chr6 63318960 63319252 -119095990 - AluSq SINE Alu -12 301 1 2188 198 132 22 chr6 63319930 63320956 -119094286 + L1ME2 LINE L1 4600 5743 -421 2806 224 101 20 chr6 63320982 63321736 -119093506 - MER21B LTR ERV1 -30 833 19 353 227 0 103 chr6 63321761 63321858 -119093384 - MER21B LTR ERV1 -776 87 1 1837 227 5 25 chr6 63321859 63322291 -119092951 + L1ME2 LINE L1 5741 6163 -1 312 351 49 79 chr6 63322658 63322986 -119092256 - L2 LINE L2 -2 3270 2953 333 297 170 24 chr6 63323143 63323355 -119091887 - MIR SINE MIR 0 262 20 466 174 0 12 chr6 63324251 63324446 -119090796 + AluJo SINE Alu 1 223 -89 715 205 31 46 chr6 63324446 63324641 -119090601 + MER21B LTR ERV1 526 717 -146 507 201 253 13 chr6 63325163 63325317 -119089925 - AluSc SINE Alu -16 293 103 243 296 128 17 chr6 63325340 63325512 -119089730 + MIR SINE MIR 66 256 -6 1773 166 7 0 chr6 63325670 63325996 -119089246 - AluJo SINE Alu 0 328 1 1964 115 35 7 chr6 63327400 63327687 -119087555 - AluSq SINE Alu -18 295 1 265 265 195 26 chr6 63327702 63327847 -119087395 + MER5A DNA MER1_type 2 186 -3 426 293 133 36 chr6 63327857 63328106 -119087136 - L3 LINE CR1 -572 1005 733 1163 164 27 5 chr6 63328179 63328398 -119086844 - L1MC1 LINE L1 -6 6327 6104 1295 143 92 7 chr6 63328449 63328537 -119086705 - L1MCa LINE L1 -5129 1297 1218 189 0 0 0 chr6 63328537 63328558 -119086684 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1295 143 92 7 chr6 63328558 63328742 -119086500 - L1MCa LINE L1 -5208 1218 1002 * 6852 198 16 26 chr6 63328727 63329362 -119085880 - L1 LINE L1 -1193 4953 4313 1501 122 148 38 chr6 63329362 63329625 -119085617 + AluSx SINE Alu 1 292 -20 6852 198 16 26 chr6 63329625 63330021 -119085221 - L1 LINE L1 -1833 4313 3915 2395 78 0 0 chr6 63330021 63330317 -119084925 - AluY SINE Alu -15 296 1 6852 198 16 26 chr6 63330317 63330883 -119084359 - L1 LINE L1 -2231 3915 3371 210 325 107 75 chr6 63332619 63332871 -119082371 - L2 LINE L2 -33 3239 2980 226 318 9 64 chr6 63333261 63333371 -119081871 - MIR3 SINE MIR -101 107 4 193 388 51 15 chr6 63333479 63333752 -119081490 - L2 LINE L2 -1212 2102 1820 1469 203 34 10 chr6 63333783 63334078 -119081164 + AluJb SINE Alu 1 302 -10 257 409 40 11 chr6 63334293 63334469 -119080773 + L2 LINE L2 3089 3269 -3 2139 110 3 7 chr6 63335413 63335712 -119079530 - AluSx SINE Alu -14 298 1 989 249 43 4 chr6 63335988 63336329 -119078913 + L1ME1 LINE L1 2415 2785 -3361 403 233 197 5 chr6 63336339 63336532 -119078710 + L1ME1 LINE L1 4137 4366 -1780 2300 211 82 42 chr6 63336665 63337511 -119077731 + L1ME1 LINE L1 4691 5607 -559 6165 7 0 3 chr6 63337511 63338207 -119077035 + L1PA2 LINE L1 5462 6155 0 2300 211 82 42 chr6 63338207 63338605 -119076637 + L1ME1 LINE L1 5607 5987 -179 1845 147 7 23 chr6 63338823 63339129 -119076113 - AluJo SINE Alu 0 312 12 332 340 63 43 chr6 63339186 63339439 -119075803 + HAL1 LINE L1 2245 2502 -5 665 216 34 15 chr6 63339605 63339879 -119075363 - LTR40b LTR ERVL 0 462 206 23 0 0 0 chr6 63339880 63339903 -119075339 + AT_rich Low_complexity Low_complexity 1 23 0 812 106 0 0 chr6 63339903 63340007 -119075235 - AluSp/q SINE Alu -24 289 186 243 226 57 0 chr6 63340013 63340066 -119075176 - LTR40a LTR ERVL -362 157 102 793 122 89 0 chr6 63340067 63340190 -119075052 + MER1B DNA MER1_type 1 134 -163 2060 102 43 23 chr6 63340200 63340503 -119074739 + MER1B DNA MER1_type 31 339 0 352 314 29 10 chr6 63340504 63340606 -119074636 - LTR40a LTR ERVL -412 107 4 2251 79 11 0 chr6 63340712 63340991 -119074251 + AluY SINE Alu 1 282 -29 432 0 0 0 chr6 63340991 63341039 -119074203 + (TA)n Simple_repeat Simple_repeat 2 49 0 333 0 0 0 chr6 63341038 63341075 -119074167 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 1779 161 6 13 chr6 63341335 63341646 -119073596 + AluJb SINE Alu 1 309 -3 1507 192 25 4 chr6 63341819 63342095 -119073147 + AluJo SINE Alu 1 282 -30 475 294 124 34 chr6 63342409 63342586 -119072656 - MIR SINE MIR -24 238 46 1807 155 143 0 chr6 63342849 63343235 -119072007 - L1MB5 LINE L1 0 6410 5970 1816 159 99 55 chr6 63343235 63343650 -119071592 - MLT1C LTR MaLR -34 433 1 3273 177 43 12 chr6 63343650 63344522 -119070720 - L1MB5 LINE L1 -711 5703 4809 589 261 54 0 chr6 63344540 63344724 -119070518 + L1PBa LINE L1 6 199 -6664 * 8240 162 55 5 chr6 63344721 63346119 -119069123 + L1PBa LINE L1 652 2372 -4490 2182 124 0 0 chr6 63346119 63346417 -119068825 + AluY SINE Alu 1 298 -13 8240 162 55 5 chr6 63346417 63347170 -119068072 + L1PBa LINE L1 2372 3086 -3776 1007 223 58 21 chr6 63347199 63347296 -119067946 - L1MB5 LINE L1 -4036 2348 2256 824 217 136 90 chr6 63347296 63347642 -119067600 - MLT1A1 LTR MaLR -3 362 1 1007 223 58 21 chr6 63347642 63348142 -119067100 - L1MB5 LINE L1 -4128 2256 1650 1200 80 0 0 chr6 63348147 63348297 -119066945 - AluSg/x SINE Alu -5 307 158 824 147 80 31 chr6 63348327 63348551 -119066691 + Charlie5 DNA MER1_type 2380 2614 0 223 215 62 15 chr6 63350427 63350492 -119064750 + CT-rich Low_complexity Low_complexity 4 71 0 256 346 58 0 chr6 63350748 63350852 -119064390 - L2 LINE L2 -221 3051 2942 * 463 303 123 41 chr6 63350850 63350988 -119064254 - L2 LINE L2 0 3313 3188 2084 129 36 41 chr6 63350988 63351352 -119063890 - THE1B LTR MaLR 0 364 3 463 303 123 41 chr6 63351352 63351457 -119063785 - L2 LINE L2 -125 3188 3050 1985 154 0 3 chr6 63352827 63353126 -119062116 - AluJb SINE Alu -14 298 1 1934 157 10 0 chr6 63353199 63353492 -119061750 + AluSx SINE Alu 1 296 -16 2267 115 0 0 chr6 63353562 63353867 -119061375 - AluSg SINE Alu -2 308 4 2138 146 26 13 chr6 63354670 63355047 -119060195 - L1PA16 LINE L1 -5 6161 5780 644 316 70 4 chr6 63355769 63356013 -119059229 + L2 LINE L2 2538 2797 -517 25 0 0 0 chr6 63356556 63356581 -119058661 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 63356691 63356721 -119058521 + AT_rich Low_complexity Low_complexity 1 30 0 604 303 108 46 chr6 63358436 63358655 -119056587 - LTR67 LTR ERVL -5 552 348 1056 254 0 5 chr6 63358655 63358879 -119056363 - MER58A DNA MER1_type 0 224 2 604 303 108 46 chr6 63358879 63359094 -119056148 - LTR67 LTR ERVL -209 348 91 235 254 30 0 chr6 63359340 63359407 -119055835 - Charlie8 DNA MER1_type -2348 69 1 219 154 0 0 chr6 63359717 63359756 -119055486 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1504 125 165 131 chr6 63359784 63360112 -119055130 - Charlie3 DNA MER1_type 0 2712 1 415 350 85 22 chr6 63360113 63360336 -119054906 - MIR SINE MIR -25 237 1 26 64 0 0 chr6 63361137 63361184 -119054058 + AT_rich Low_complexity Low_complexity 1 47 0 703 248 31 44 chr6 63361939 63362165 -119053077 + L2 LINE L2 2587 2809 -505 30788 98 11 14 chr6 63362914 63368604 -119046638 + L1PA7 LINE L1 778 6464 -5 278 233 70 23 chr6 63368946 63369032 -119046210 - MIR SINE MIR -56 206 117 343 378 81 14 chr6 63369288 63369436 -119045806 + MIR3 SINE MIR 38 195 -13 24 0 0 0 chr6 63369620 63369644 -119045598 + AT_rich Low_complexity Low_complexity 1 24 0 205 213 0 21 chr6 63370536 63370583 -119044659 - L2 LINE L2 -5 3308 3263 358 217 96 0 chr6 63371127 63371210 -119044032 - L2 LINE L2 -13 3300 3210 231 36 0 0 chr6 63371232 63371260 -119043982 + (CA)n Simple_repeat Simple_repeat 1 28 0 1404 204 35 14 chr6 63372105 63372390 -119042852 - AluJb SINE Alu -11 291 1 519 305 164 11 chr6 63376546 63376900 -119038342 + L2 LINE L2 2110 2517 -797 763 170 115 60 chr6 63376921 63377103 -119038139 + MER20 DNA MER1_type 1 192 -27 304 326 62 105 chr6 63377355 63377888 -119037354 + L2 LINE L2 2804 3313 0 294 312 83 10 chr6 63377951 63378134 -119037108 + MIR SINE MIR 50 241 -21 1553 179 33 0 chr6 63378687 63378960 -119036282 + AluJo SINE Alu 1 282 -30 685 217 30 12 chr6 63379152 63379318 -119035924 + MIR SINE MIR 94 262 0 4537 56 0 7 chr6 63379561 63380135 -119035107 + L1PA6 LINE L1 5585 6154 0 671 216 62 34 chr6 63381383 63381591 -119033651 - L1ME3A LINE L1 -6 6164 5951 1333 289 14 3 chr6 63381591 63381948 -119033294 - L1PA13 LINE L1 -6287 500 140 968 147 7 0 chr6 63381960 63382127 -119033115 - AluSp SINE Alu 0 312 145 321 284 12 68 chr6 63382130 63382292 -119032950 - L1PA13 LINE L1 -6634 153 1 42 48 0 0 chr6 63382367 63382430 -119032812 + AT_rich Low_complexity Low_complexity 1 63 0 618 261 81 52 chr6 63382457 63382977 -119032265 - L1MCa LINE L1 -3987 2600 2066 518 282 17 0 chr6 63383001 63383211 -119032031 - L1MCa LINE L1 -4572 1834 1686 1283 204 14 14 chr6 63383213 63383497 -119031745 + L1MB2 LINE L1 5738 6021 -150 1513 225 23 26 chr6 63383499 63383850 -119031392 + MLT1A1 LTR MaLR 4 353 -12 749 182 7 0 chr6 63383858 63384001 -119031241 + L1MB2 LINE L1 6019 6162 -9 402 285 102 12 chr6 63384010 63384333 -119030909 - L1MCa LINE L1 -4654 1752 1401 1177 242 126 47 chr6 63384412 63384817 -119030425 + LTR40a LTR ERVL 83 519 0 429 243 22 44 chr6 63384820 63385001 -119030241 - L1MCa LINE L1 -5114 1295 1119 384 280 56 0 chr6 63385649 63385756 -119029486 - MER81 DNA DNA -1 113 1 730 281 100 71 chr6 63385876 63386285 -119028957 + L2 LINE L2 2893 3313 0 1007 222 126 41 chr6 63386458 63386823 -119028419 + MSTD LTR MaLR 1 396 0 386 315 122 15 chr6 63387408 63387605 -119027637 + L2 LINE L2 2419 2636 -678 970 249 19 5 chr6 63387766 63387979 -119027263 + MER58A DNA MER1_type 9 224 0 351 244 236 36 chr6 63388450 63388675 -119026567 + L2 LINE L2 2196 2465 -849 2528 90 63 8 chr6 63388719 63389098 -119026144 + MLT2A1 LTR ERVL 1 400 -44 305 258 0 43 chr6 63389102 63389195 -119026047 - L1MC4 LINE L1 -1339 6703 6615 210 265 0 0 chr6 63389199 63389267 -119025975 + (TA)n Simple_repeat Simple_repeat 1 68 0 255 184 40 40 chr6 63389267 63389343 -119025899 - LTR38-int LTR ERV1 -355 1431 1356 261 154 0 0 chr6 63389343 63389382 -119025860 + (CATA)n Simple_repeat Simple_repeat 1 39 0 592 255 8 15 chr6 63389389 63389649 -119025593 + (CATATA)n Simple_repeat Simple_repeat 1 257 0 266 217 33 33 chr6 63389656 63389776 -119025466 + (CATG)n Simple_repeat Simple_repeat 4 123 0 253 256 73 0 chr6 63389784 63389866 -119025376 - L1MC4 LINE L1 -1339 6703 6616 * 262 273 23 0 chr6 63389838 63389926 -119025316 - L1MC4 LINE L1 -1339 6703 6614 15734 77 14 0 chr6 63389944 63391978 -119023264 + HERVL-A1 LTR ERVL 3593 5654 0 2686 89 33 13 chr6 63391980 63392374 -119022868 + MLT2A1 LTR ERVL 3 404 -40 496 135 43 14 chr6 63392389 63392746 -119022496 + (TA)n Simple_repeat Simple_repeat 1 367 0 308 198 0 142 chr6 63392755 63392861 -119022381 + L1MC4 LINE L1 6613 6703 -1339 506 135 0 28 chr6 63392866 63393007 -119022235 + (TA)n Simple_repeat Simple_repeat 2 138 0 315 194 20 92 chr6 63393016 63393114 -119022128 + L1MC4 LINE L1 6613 6703 -1339 376 152 9 9 chr6 63393119 63393224 -119022018 + (TA)n Simple_repeat Simple_repeat 1 105 0 380 125 0 16 chr6 63393224 63393288 -119021954 + HERVL-A2 LTR ERVL 5592 5654 0 446 61 2 2 chr6 63393288 63393355 -119021887 + MLT2A2 LTR ERVL 1 57 -396 278 94 75 38 chr6 63393364 63393417 -119021825 + MLT2A2 LTR ERVL 399 453 0 1584 259 156 24 chr6 63393427 63394080 -119021162 + L2 LINE L2 2524 3276 -37 2118 89 21 17 chr6 63394080 63394371 -119020871 - AluSg1 SINE Alu -17 292 1 1584 259 156 24 chr6 63394371 63394415 -119020827 + L2 LINE L2 3276 3313 0 301 233 0 14 chr6 63394414 63394487 -119020755 - MIR SINE MIR -19 243 172 * 360 271 78 8 chr6 63394829 63394958 -119020284 - LTR33 LTR ERVL -57 464 327 1178 284 46 8 chr6 63395082 63395448 -119019794 + LTR16C LTR ERVL 80 459 -32 2004 136 17 0 chr6 63395448 63395749 -119019493 + AluSx SINE Alu 1 306 -6 215 328 67 37 chr6 63397568 63397702 -119017540 + MIR SINE MIR 34 171 -91 180 331 69 66 chr6 63398386 63398748 -119016494 + L2 LINE L2 2615 2977 -337 1735 185 28 0 chr6 63398917 63399204 -119016038 - AluJb SINE Alu -16 296 2 416 277 56 56 chr6 63399528 63399723 -119015519 - MIR3 SINE MIR -11 197 3 321 89 0 0 chr6 63400075 63400120 -119015122 + (TG)n Simple_repeat Simple_repeat 2 46 0 2044 131 7 3 chr6 63401299 63401604 -119013638 - AluSx SINE Alu -4 308 3 1367 223 104 52 chr6 63401725 63402205 -119013037 + MLT1D LTR MaLR 1 505 0 968 216 10 19 chr6 63402245 63402453 -119012789 - AluJb SINE Alu -19 293 88 404 198 19 19 chr6 63402456 63402562 -119012680 - Charlie2 DNA MER1_type -36 2826 2721 1690 229 26 49 chr6 63402588 63402793 -119012449 + L1M4c LINE L1 2048 2256 -4593 2439 80 0 3 chr6 63402793 63403094 -119012148 + AluY SINE Alu 1 300 -11 1690 229 26 49 chr6 63403094 63403457 -119011785 + L1M4c LINE L1 2256 2603 -4246 6604 206 50 14 chr6 63403488 63404554 -119010688 + L1M4c LINE L1 2809 3970 -2878 2748 139 82 0 chr6 63404554 63405028 -119010214 + MER75 DNA T2_type 2 514 0 6604 206 50 14 chr6 63405028 63405647 -119009595 + L1M4c LINE L1 3970 4565 -2283 32093 120 14 32 chr6 63405647 63408103 -119007139 + L1PA7 LINE L1 2 2502 -3652 252 0 0 0 chr6 63408103 63408131 -119007111 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 32093 120 14 32 chr6 63408131 63411958 -119003284 + L1PA7 LINE L1 2502 6154 0 24 67 0 0 chr6 63411961 63412006 -119003236 + AT_rich Low_complexity Low_complexity 1 45 0 5013 168 27 31 chr6 63412012 63413112 -119002130 + L1M4c LINE L1 4552 5647 -1201 615 174 7 90 chr6 63413112 63413267 -119001975 + L1MA8 LINE L1 5074 5215 -1167 * 3717 167 84 37 chr6 63413266 63413641 -119001601 + L1PA15-16 LINE L1 3 359 -6490 2022 147 0 6 chr6 63413641 63413955 -119001287 - AluSx SINE Alu 0 312 1 3717 167 84 37 chr6 63413955 63414298 -119000944 + L1PA15-16 LINE L1 359 758 -6091 1849 165 127 41 chr6 63414298 63414692 -119000550 - MSTA LTR MaLR 0 428 1 8421 165 82 14 chr6 63414692 63416237 -118999005 - MSTA-int LTR MaLR 0 1651 1 2062 171 111 5 chr6 63416237 63416624 -118998618 - MSTA LTR MaLR 0 428 1 1339 256 34 50 chr6 63416635 63416956 -118998286 + L1PA15-16 LINE L1 761 1076 -5773 5016 143 56 27 chr6 63416959 63418139 -118997103 + L1PA16 LINE L1 4949 6165 -1 5093 161 51 6 chr6 63418151 63419405 -118995837 + L1MA8 LINE L1 5216 6523 -4 677 228 51 22 chr6 63419446 63419722 -118995520 - Charlie2b DNA MER1_type -167 2615 2332 1243 231 104 9 chr6 63419777 63420219 -118995023 - Charlie2b DNA MER1_type -566 2216 1813 600 173 91 0 chr6 63420223 63420333 -118994909 - AluJb SINE Alu -11 301 182 250 232 0 0 chr6 63420345 63420401 -118994841 - Charlie2b DNA MER1_type -1061 1801 1666 279 71 0 0 chr6 63420428 63420470 -118994772 + (A)n Simple_repeat Simple_repeat 1 42 0 3857 220 79 42 chr6 63420492 63421642 -118993600 - Charlie2b DNA MER1_type -1137 1645 453 2035 148 0 3 chr6 63422259 63422564 -118992678 - AluJb SINE Alu -8 304 1 1806 174 4 0 chr6 63422637 63422918 -118992324 + AluSx SINE Alu 1 282 -30 7846 14 0 0 chr6 63423186 63424525 -118990717 - L1PA2 LINE L1 0 6155 4815 9155 107 2 3 chr6 63424525 63425740 -118989502 + L1PA2 LINE L1 3597 4809 -1337 2217 113 7 0 chr6 63425744 63426046 -118989196 - AluSg SINE Alu -2 308 5 2278 123 32 13 chr6 63426848 63427223 -118988019 - L1PA16 LINE L1 -5 6161 5780 539 293 91 16 chr6 63427945 63428187 -118987055 + L2 LINE L2 2538 2797 -517 23 54 0 0 chr6 63428636 63428673 -118986569 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr6 63428729 63428753 -118986489 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr6 63428860 63428893 -118986349 + AT_rich Low_complexity Low_complexity 1 33 0 551 314 94 34 chr6 63430610 63430830 -118984412 - LTR67 LTR ERVL -5 552 347 1033 251 5 5 chr6 63430830 63431053 -118984189 - MER58A DNA MER1_type 0 224 2 551 314 94 34 chr6 63431053 63431268 -118983974 - LTR67 LTR ERVL -210 347 91 219 154 0 0 chr6 63431891 63431930 -118983312 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1593 116 165 131 chr6 63431958 63432286 -118982956 - Charlie3 DNA MER1_type 0 2712 1 415 318 108 45 chr6 63432287 63432510 -118982732 - MIR SINE MIR -25 237 1 183 397 0 0 chr6 63432605 63432668 -118982574 - MIR SINE MIR -105 103 41 26 64 0 0 chr6 63433312 63433359 -118981883 + AT_rich Low_complexity Low_complexity 1 47 0 703 255 30 51 chr6 63434098 63434333 -118980909 + L2 LINE L2 2580 2809 -505 7622 117 15 18 chr6 63435079 63436744 -118978498 + L1PA14 LINE L1 778 2448 -4013 5901 102 21 13 chr6 63436864 63438056 -118977186 + L1PA14 LINE L1 5278 6476 0 559 278 116 31 chr6 63438296 63438526 -118976716 + MIR SINE MIR 3 248 -14 359 270 61 17 chr6 63438572 63438687 -118976555 - L2 LINE L2 -166 3106 2987 1705 171 27 10 chr6 63439122 63439415 -118975827 + AluJo SINE Alu 1 298 -14 13873 128 26 36 chr6 63439912 63441492 -118973750 - Tigger1 DNA MER2_type -2 2416 868 2031 120 3 7 chr6 63441492 63441792 -118973450 - AluSx SINE Alu -13 299 1 13873 128 26 36 chr6 63441792 63442648 -118972594 - Tigger1 DNA MER2_type -1550 868 5 1411 212 71 79 chr6 63442698 63443193 -118972049 + L2 LINE L2 2157 2647 -667 1897 132 6 60 chr6 63443892 63444210 -118971032 - AluSx SINE Alu -11 301 1 21 57 0 0 chr6 63444733 63444768 -118970474 + AT_rich Low_complexity Low_complexity 1 35 0 833 207 96 29 chr6 63445033 63445241 -118970001 - MER58A DNA MER1_type -1 223 2 21 0 0 0 chr6 63445497 63445518 -118969724 + AT_rich Low_complexity Low_complexity 1 21 0 1279 209 35 28 chr6 63445585 63446007 -118969235 - MLT2B1 LTR ERVL -53 467 1 446 254 47 82 chr6 63446022 63446533 -118968709 - L1MC5 LINE L1 -233 7728 7261 202 366 53 8 chr6 63446695 63446826 -118968416 - MIR SINE MIR -79 183 47 1040 216 0 19 chr6 63447069 63447277 -118967965 + MIR SINE MIR 43 246 -16 1422 143 56 4 chr6 63447529 63447780 -118967462 + Tigger5 DNA MER2_type 2059 2322 -1 303 297 61 40 chr6 63449342 63449490 -118965752 + MIR SINE MIR 92 242 -20 2308 91 10 0 chr6 63449967 63450264 -118964978 - AluSc SINE Alu -9 300 1 258 146 62 0 chr6 63450887 63450935 -118964307 + MIR SINE MIR 212 262 0 2036 105 3 11 chr6 63451601 63451915 -118963327 + AluSx SINE Alu 1 312 0 697 212 0 89 chr6 63452847 63453026 -118962216 - FRAM SINE Alu -3 163 1 23 54 0 0 chr6 63453337 63453374 -118961868 + AT_rich Low_complexity Low_complexity 1 37 0 487 129 0 0 chr6 63453887 63453957 -118961285 + MER51A LTR ERV1 1 70 -564 955 200 142 10 chr6 63454108 63454398 -118960844 + MER51A LTR ERV1 329 640 0 275 272 0 25 chr6 63454737 63454818 -118960424 - MER116 DNA Mariner -1 79 1 407 246 16 16 chr6 63454928 63455050 -118960192 + L2 LINE L2 2244 2365 -949 2152 118 3 0 chr6 63455684 63455988 -118959254 - AluSq SINE Alu -8 305 1 2194 101 3 3 chr6 63457204 63457501 -118957741 - AluSx SINE Alu -15 297 1 3887 202 80 33 chr6 63457507 63458538 -118956704 - L1MC4a LINE L1 0 7808 6730 320 291 51 76 chr6 63459217 63459454 -118955788 + L1 LINE L1 2257 2487 -3659 481 204 31 0 chr6 63459593 63459691 -118955551 + AluJo SINE Alu 37 137 -175 1235 203 129 68 chr6 63459758 63460255 -118954987 - MER39 LTR ERV1 0 707 2 308 272 0 12 chr6 63461263 63461344 -118953898 - L2 LINE L2 -5 3267 3188 22 0 0 0 chr6 63461830 63461852 -118953390 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr6 63461854 63461876 -118953366 + (TTA)n Simple_repeat Simple_repeat 3 24 0 5103 27 0 22 chr6 63461876 63462498 -118952744 - L1PA3 LINE L1 -18 6137 5530 297 334 89 16 chr6 63462512 63462644 -118952598 + MIR SINE MIR 33 169 -66 258 56 0 0 chr6 63462743 63462779 -118952463 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 216 264 0 97 chr6 63463555 63463627 -118951615 - MIR SINE MIR -92 116 52 1415 206 42 102 chr6 63464045 63464517 -118950725 - MER31B LTR ERV1 -22 444 1 444 204 71 0 chr6 63464517 63464630 -118950612 - MER31B-int LTR ERV1 -20 4916 4796 328 349 74 0 chr6 63465889 63466038 -118949204 - MER31B-int LTR ERV1 -4093 2708 2549 2408 88 0 0 chr6 63466083 63466379 -118948863 + AluY SINE Alu 1 296 -15 311 340 7 14 chr6 63467837 63467981 -118947261 - MER31B-int LTR ERV1 -5429 1372 1230 804 211 55 28 chr6 63468419 63468637 -118946605 - MER31B-int LTR ERV1 -4514 422 199 468 227 51 141 chr6 63468674 63468930 -118946312 - MER31B-int LTR ERV1 -4669 267 35 1460 168 58 93 chr6 63468999 63469482 -118945760 - MER31B LTR ERV1 0 466 1 609 319 47 0 chr6 63469482 63469673 -118945569 - MIR SINE MIR -29 233 34 4070 141 21 7 chr6 63470323 63471003 -118944239 + L1PA16 LINE L1 5465 6153 -13 2180 117 10 0 chr6 63471193 63471492 -118943750 + AluSx SINE Alu 1 302 -10 17799 94 18 3 chr6 63471638 63475052 -118940190 + L1PA7 LINE L1 2741 6150 -4 235 256 70 23 chr6 63475390 63475476 -118939766 - MIR SINE MIR -56 206 117 341 377 82 14 chr6 63475762 63475908 -118939334 + MIR3 SINE MIR 38 193 -15 24 0 0 0 chr6 63476095 63476119 -118939123 + AT_rich Low_complexity Low_complexity 1 24 0 213 191 0 21 chr6 63477012 63477059 -118938183 - L2 LINE L2 -5 3308 3263 367 183 110 0 chr6 63477597 63477679 -118937563 - L2 LINE L2 -13 3300 3210 504 0 0 0 chr6 63477705 63477761 -118937481 + (CA)n Simple_repeat Simple_repeat 1 56 0 1520 194 7 20 chr6 63478666 63478959 -118936283 - AluJo SINE Alu -21 291 3 481 298 217 6 chr6 63483120 63483466 -118931776 + L2 LINE L2 2110 2528 -786 762 171 116 61 chr6 63483486 63483667 -118931575 + MER20 DNA MER1_type 2 192 -27 235 328 76 29 chr6 63483919 63484157 -118931085 + L2 LINE L2 2804 3052 -220 265 315 7 107 chr6 63484338 63484487 -118930755 + L2 LINE L2 3139 3272 0 336 312 86 5 chr6 63484533 63484733 -118930509 + MIR SINE MIR 28 241 -21 1598 172 33 0 chr6 63485286 63485559 -118929683 + AluJo SINE Alu 1 282 -30 688 211 30 12 chr6 63485751 63485917 -118929325 + MIR SINE MIR 94 262 0 4465 61 2 5 chr6 63486160 63486732 -118928510 + L1PA6 LINE L1 5585 6154 0 642 204 63 34 chr6 63487978 63488184 -118927058 - L1ME3A LINE L1 -6 6164 5953 1178 296 14 3 chr6 63488186 63488538 -118926704 - L1PA13 LINE L1 -6287 500 145 956 151 7 0 chr6 63488551 63488723 -118926519 - AluSp SINE Alu 0 317 145 295 278 12 68 chr6 63488726 63488888 -118926354 - L1PA13 LINE L1 -6634 153 1 39 60 0 0 chr6 63488963 63489030 -118926212 + AT_rich Low_complexity Low_complexity 1 67 0 566 255 104 33 chr6 63489042 63489535 -118925707 - L1MCa LINE L1 -3828 2600 2088 476 228 144 20 chr6 63489609 63489811 -118925431 - L1MCa LINE L1 -4438 1968 1686 1159 188 8 8 chr6 63489853 63490093 -118925149 + L1MB2 LINE L1 5782 6021 -150 1306 233 23 28 chr6 63490095 63490447 -118924795 + MLT1A1 LTR MaLR 4 353 -12 696 189 7 0 chr6 63490455 63490598 -118924644 + L1MB2 LINE L1 6019 6162 -9 359 276 105 19 chr6 63490608 63490923 -118924319 - L1MCa LINE L1 -4654 1752 1411 1086 244 123 47 chr6 63491010 63491416 -118923826 + LTR40a LTR ERVL 83 519 0 375 266 25 19 chr6 63491419 63491577 -118923665 - L1MCa LINE L1 -5114 1295 1137 403 260 48 0 chr6 63491987 63492091 -118923151 - MER81 DNA DNA -5 109 1 671 288 101 62 chr6 63492252 63492620 -118922622 + L2 LINE L2 2932 3313 0 931 225 132 47 chr6 63492793 63493158 -118922084 + MSTD LTR MaLR 1 396 0 309 350 67 6 chr6 63493773 63493953 -118921289 + L2 LINE L2 2459 2649 -665 874 239 20 0 chr6 63494100 63494297 -118920945 + MER58A DNA MER1_type 9 209 -15 334 237 0 15 chr6 63494411 63494542 -118920700 + (TA)n Simple_repeat Simple_repeat 1 129 0 345 324 0 0 chr6 63494591 63494696 -118920546 + (CA)n Simple_repeat Simple_repeat 2 106 0 501 233 11 22 chr6 63494701 63494881 -118920361 + (CATA)n Simple_repeat Simple_repeat 2 179 0 381 272 15 15 chr6 63494862 63495135 -118920107 + (CATG)n Simple_repeat Simple_repeat 1 273 0 * 523 256 6 6 chr6 63495136 63495308 -118919934 + (TA)n Simple_repeat Simple_repeat 1 172 0 15311 72 10 1 chr6 63495335 63497377 -118917865 + HERVL-A1 LTR ERVL 3593 5654 0 2580 81 35 10 chr6 63497377 63497771 -118917471 + MLT2A1 LTR ERVL 1 404 -40 623 116 35 6 chr6 63497775 63497947 -118917295 + (TA)n Simple_repeat Simple_repeat 2 178 0 378 58 0 0 chr6 63497951 63498003 -118917239 + HERVL-A2 LTR ERVL 5603 5654 0 441 18 0 0 chr6 63498003 63498058 -118917184 + MLT2A2 LTR ERVL 1 55 -398 377 29 29 29 chr6 63498078 63498147 -118917095 + (TA)n Simple_repeat Simple_repeat 2 70 0 254 27 108 0 chr6 63498150 63498187 -118917055 + MLT2A1 LTR ERVL 413 453 0 1620 267 158 40 chr6 63498198 63498849 -118916393 + L2 LINE L2 2525 3267 -46 2174 100 0 4 chr6 63498849 63499129 -118916113 - AluSg1 SINE Alu -14 295 17 1620 267 158 40 chr6 63499129 63499183 -118916059 + L2 LINE L2 3267 3313 0 302 233 0 14 chr6 63499182 63499255 -118915987 - MIR SINE MIR -19 243 172 * 304 279 78 8 chr6 63499597 63499726 -118915516 - LTR33 LTR ERVL -57 464 327 993 290 49 8 chr6 63499852 63500217 -118915025 + LTR16C LTR ERVL 80 459 -32 2224 109 10 0 chr6 63500217 63500520 -118914722 + AluSx SINE Alu 1 306 -6 203 315 11 45 chr6 63501898 63501987 -118913255 + MIR SINE MIR 86 171 -91 199 357 53 47 chr6 63502663 63503024 -118912218 + L2 LINE L2 2615 2977 -337 1910 169 0 3 chr6 63503193 63503488 -118911754 - AluJb SINE Alu -17 295 2 438 281 51 56 chr6 63503811 63504007 -118911235 - MIR3 SINE MIR -11 197 3 189 171 0 0 chr6 63504298 63504333 -118910909 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr6 63505059 63505083 -118910159 + AT_rich Low_complexity Low_complexity 1 24 0 2059 136 7 3 chr6 63505521 63505830 -118909412 - AluSx SINE Alu 0 312 3 1061 241 107 50 chr6 63505951 63506429 -118908813 + MLT1D LTR MaLR 1 505 0 1043 178 14 68 chr6 63506468 63506687 -118908555 - AluJb SINE Alu -18 294 88 312 226 19 19 chr6 63506690 63506796 -118908446 - Charlie2 DNA MER1_type -36 2826 2721 1510 236 23 41 chr6 63506823 63507025 -118908217 + L1MA8 LINE L1 2772 2976 -4590 2380 81 0 3 chr6 63507025 63507321 -118907921 + AluY SINE Alu 1 295 -16 1510 236 23 41 chr6 63507321 63507677 -118907565 + L1MA8 LINE L1 2976 3320 -4246 5685 206 57 12 chr6 63507719 63508774 -118906468 + L1MA8 LINE L1 3537 4686 -2879 2708 146 73 0 chr6 63508774 63509252 -118905990 + MER75 DNA T2_type 2 514 0 5685 206 57 12 chr6 63509252 63509739 -118905503 + L1MA8 LINE L1 4686 5150 -2415 30141 117 19 31 chr6 63509755 63515996 -118899246 + L1PA7 LINE L1 2 6154 0 22 80 0 0 chr6 63515998 63516048 -118899194 + AT_rich Low_complexity Low_complexity 1 50 0 4466 171 30 50 chr6 63516054 63517206 -118898036 + L1MA8 LINE L1 5269 6398 -1167 3295 179 84 29 chr6 63517205 63517574 -118897668 + L1PA15-16 LINE L1 3 350 -6499 * 1860 162 0 13 chr6 63517574 63517882 -118897360 - AluSx SINE Alu -8 304 1 3295 179 84 29 chr6 63517882 63518226 -118897016 + L1PA15-16 LINE L1 350 755 -6094 1805 175 127 41 chr6 63518226 63518620 -118896622 - MSTA LTR MaLR 0 428 1 7888 159 83 15 chr6 63518620 63520165 -118895077 - MSTA-int LTR MaLR 0 1651 1 2175 153 114 5 chr6 63520165 63520551 -118894691 - MSTA LTR MaLR 0 428 1 1166 255 34 53 chr6 63520562 63520884 -118894358 + L1PA15-16 LINE L1 761 1076 -5773 4581 150 58 19 chr6 63520887 63522041 -118893201 + L1PA16 LINE L1 4949 6150 -16 25 0 0 0 chr6 63522041 63522066 -118893176 + AT_rich Low_complexity Low_complexity 1 25 0 4716 163 51 7 chr6 63522074 63523328 -118891914 + L1MA8 LINE L1 6399 7707 -3 4140 208 104 99 chr6 63523363 63524133 -118891109 - Charlie2b DNA MER1_type -246 2616 1851 581 176 93 0 chr6 63524133 63524241 -118891001 - AluJb SINE Alu -13 299 182 4140 208 104 99 chr6 63524241 63525516 -118889726 - Charlie2b DNA MER1_type -1011 1851 453 781 273 60 23 chr6 63525974 63526322 -118888920 - Charlie2b DNA MER1_type -2349 433 73 1108 312 51 62 chr6 63526497 63527012 -118888230 + L2 LINE L2 2015 2519 -795 2229 124 16 0 chr6 63527012 63527319 -118887923 - AluSx SINE Alu 0 312 1 1108 312 51 62 chr6 63527319 63527613 -118887629 + L2 LINE L2 2519 2815 -499 706 234 15 5 chr6 63528167 63528364 -118886878 - L1ME LINE L1 -317 5804 5606 487 183 8 71 chr6 63528522 63528648 -118886594 + MER58B DNA MER1_type 219 336 -5 2156 133 7 0 chr6 63528882 63529232 -118886010 - AluSx SINE Alu 0 352 1 3344 288 62 25 chr6 63529245 63530675 -118884567 - L2 LINE L2 0 3313 1825 20878 83 6 1 chr6 63530677 63533625 -118881617 + L1P LINE L1 1 2965 -3181 314 349 25 47 chr6 63584246 63584481 -118830761 + L2 LINE L2 3084 3313 0 249 98 0 0 chr6 63584657 63584698 -118830544 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 227 302 0 0 chr6 63584834 63584897 -118830345 - tRNA-Met-e tRNA tRNA -2 73 11 185 288 110 63 chr6 63585417 63585628 -118829614 - MIR3 SINE MIR -30 232 15 236 324 0 0 chr6 63585824 63585892 -118829350 - L2 LINE L2 -1 3271 3204 1895 259 112 34 chr6 63586155 63586678 -118828564 - L1MDb LINE L1 -3504 2902 2421 2034 136 0 3 chr6 63586678 63586973 -118828269 - AluSq SINE Alu -19 294 1 1895 259 112 34 chr6 63586973 63588463 -118826779 - L1MDb LINE L1 -3985 2421 783 427 164 0 0 chr6 63589043 63589116 -118826126 - tRNA-Ala-GCA tRNA tRNA -3 73 1 306 0 0 0 chr6 63589874 63589908 -118825334 + (TG)n Simple_repeat Simple_repeat 2 35 0 277 274 41 0 chr6 63590591 63590664 -118824578 + MIR SINE MIR 79 154 -108 190 340 61 61 chr6 63591546 63591840 -118823402 + L2 LINE L2 3019 3312 -1 550 138 18 0 chr6 63592027 63592136 -118823106 + GA-rich Low_complexity Low_complexity 2 112 0 277 250 0 0 chr6 63592257 63592325 -118822917 - tRNA-Met-e tRNA tRNA -2 73 6 2290 62 3 10 chr6 63593010 63593314 -118821928 - AluY SINE Alu -9 302 1 2082 93 40 33 chr6 63593525 63593826 -118821416 - AluSx SINE Alu -9 303 1 360 64 0 0 chr6 63593841 63593888 -118821354 + (TTTTA)n Simple_repeat Simple_repeat 1 47 0 1614 160 0 0 chr6 63593911 63594161 -118821081 - AluSx SINE Alu -62 250 1 252 299 82 10 chr6 63594279 63594376 -118820866 - L2 LINE L2 -1 3271 3168 2060 268 81 39 chr6 63594624 63596545 -118818697 - L1MDa LINE L1 -3493 3047 1005 521 110 0 0 chr6 63597221 63597294 -118817948 - tRNA-Ala-GCA tRNA tRNA -3 73 1 320 0 25 0 chr6 63597633 63597673 -118817569 + (TG)n Simple_repeat Simple_repeat 2 42 0 315 0 0 0 chr6 63598126 63598161 -118817081 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr6 63599955 63599977 -118815265 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 240 252 165 35 chr6 63600654 63600769 -118814473 + L2 LINE L2 3183 3312 -1 410 176 14 0 chr6 63601082 63601156 -118814086 - tRNA-Met-e tRNA tRNA 0 75 1 246 297 16 0 chr6 63602083 63602147 -118813095 - L2 LINE L2 -4 3268 3204 508 300 33 0 chr6 63602386 63602656 -118812586 - L1M4 LINE L1 -3488 2658 2380 259 185 49 0 chr6 63602764 63602845 -118812397 + (TA)n Simple_repeat Simple_repeat 2 86 0 1171 118 114 24 chr6 63603748 63604003 -118811239 - L1MB4 LINE L1 0 6180 5903 329 140 0 0 chr6 63604526 63604583 -118810659 - tRNA-Ala-GCA tRNA tRNA -16 60 4 363 263 0 0 chr6 63605034 63605110 -118810132 - tRNA-Val-GTT tRNA tRNA 0 76 1 14162 158 42 34 chr6 63605168 63609527 -118805715 - L1MA8 LINE L1 -3 7707 3314 23 0 0 0 chr6 63609948 63609971 -118805271 + AT_rich Low_complexity Low_complexity 1 23 0 278 292 154 46 chr6 63611233 63611493 -118803749 + L2 LINE L2 2923 3210 -103 305 194 48 0 chr6 63611878 63611940 -118803302 + tRNA-His-CAC tRNA tRNA 1 65 -10 272 132 147 15 chr6 63612568 63612636 -118802606 - L2 LINE L2 -1 3312 3236 236 174 65 0 chr6 63613220 63613266 -118801976 - MER66B LTR ERV1 -141 345 297 541 96 0 0 chr6 63615272 63615345 -118799897 - tRNA-Ala-GCA tRNA tRNA -3 73 1 258 81 0 0 chr6 63615681 63615718 -118799524 + (TG)n Simple_repeat Simple_repeat 2 38 0 295 307 22 80 chr6 63616160 63616297 -118798945 - MIR3 SINE MIR -77 131 3 2083 122 7 0 chr6 63616380 63616676 -118798566 - AluSq SINE Alu -15 298 1 1707 180 28 0 chr6 63616688 63616971 -118798271 - AluJb SINE Alu -21 291 1 254 274 78 29 chr6 63617092 63617194 -118798048 - L2 LINE L2 -4 3268 3162 2188 263 82 46 chr6 63617510 63619369 -118795873 - L1MDa LINE L1 -3572 2968 1005 497 123 0 0 chr6 63620037 63620110 -118795132 - tRNA-Ala-GCA tRNA tRNA -3 73 1 25 51 0 0 chr6 63620405 63620444 -118794798 + AT_rich Low_complexity Low_complexity 1 39 0 194 0 39 0 chr6 63620449 63620475 -118794767 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr6 63620922 63620944 -118794298 + (TG)n Simple_repeat Simple_repeat 1 22 0 279 311 78 0 chr6 63621620 63621723 -118793519 + MIR SINE MIR 44 154 -108 21 0 0 0 chr6 63621943 63621964 -118793278 + AT_rich Low_complexity Low_complexity 1 21 0 250 288 41 0 chr6 63622884 63622957 -118792285 + MIR SINE MIR 79 154 -108 367 332 45 38 chr6 63623854 63624146 -118791096 + L2 LINE L2 3019 3312 -1 1133 37 37 0 chr6 63624332 63624493 -118790749 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 284 250 0 0 chr6 63624615 63624683 -118790559 - tRNA-Met-e tRNA tRNA -2 73 6 225 347 32 34 chr6 63625315 63625469 -118789773 - MIR SINE MIR -77 131 3 2285 103 7 0 chr6 63625548 63625858 -118789384 - AluSx SINE Alu 0 312 1 404 0 39 0 chr6 63625868 63625919 -118789323 + (TTTTA)n Simple_repeat Simple_repeat 5 57 0 1560 172 32 0 chr6 63625919 63626169 -118789073 - AluSx SINE Alu -32 280 23 197 306 0 0 chr6 63626304 63626353 -118788889 - L2 LINE L2 -4 3268 3220 2140 270 84 39 chr6 63626639 63628548 -118786694 - L1MDa LINE L1 -3506 3034 1005 521 110 0 0 chr6 63629216 63629289 -118785953 - tRNA-Ala-GCA tRNA tRNA -3 73 1 28 29 0 0 chr6 63629581 63629616 -118785626 + AT_rich Low_complexity Low_complexity 1 35 0 206 62 31 0 chr6 63629619 63629651 -118785591 + (TG)n Simple_repeat Simple_repeat 2 34 0 279 311 78 0 chr6 63629950 63630053 -118785189 + MIR SINE MIR 44 154 -108 189 0 0 0 chr6 63630924 63630945 -118784297 + (A)n Simple_repeat Simple_repeat 1 21 0 311 271 18 12 chr6 63631594 63631764 -118783478 + (TATG)n Simple_repeat Simple_repeat 4 174 0 238 344 22 0 chr6 63631764 63631854 -118783388 + (CATG)n Simple_repeat Simple_repeat 2 93 0 197 289 0 19 chr6 63631854 63631958 -118783284 + (TATG)n Simple_repeat Simple_repeat 3 104 0 243 333 0 21 chr6 63631995 63632088 -118783154 + (CATG)n Simple_repeat Simple_repeat 2 92 0 294 276 21 9 chr6 63632088 63632404 -118782838 + (TATG)n Simple_repeat Simple_repeat 1 319 0 346 317 24 16 chr6 63632404 63632527 -118782715 + (CATG)n Simple_repeat Simple_repeat 1 124 0 192 218 35 23 chr6 63632541 63632628 -118782614 + (TATG)n Simple_repeat Simple_repeat 3 90 0 1082 169 24 17 chr6 63632659 63633020 -118782222 - MLT2A2 LTR ERVL 0 453 190 198 167 0 0 chr6 63633022 63633058 -118782184 + (TATG)n Simple_repeat Simple_repeat 3 38 0 600 340 40 14 chr6 63633058 63633363 -118781879 - L1ME3A LINE L1 -230 5940 5644 2181 205 40 89 chr6 63633363 63633769 -118781473 + LTR8 LTR ERV1 1 426 -265 258 32 0 0 chr6 63633769 63633800 -118781442 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1589 93 35 26 chr6 63633806 63634032 -118781210 + AluSg/x SINE Alu 83 310 0 2181 205 40 89 chr6 63634032 63634345 -118780897 + LTR8 LTR ERV1 431 691 0 600 340 40 14 chr6 63634345 63634459 -118780783 - L1ME3A LINE L1 -526 5644 5510 2640 102 11 5 chr6 63634702 63635075 -118780167 + THE1C LTR MaLR 1 375 0 475 179 104 0 chr6 63635379 63635485 -118779757 - MER99 DNA DNA -3 825 709 900 217 8 13 chr6 63635496 63635747 -118779495 + MLT1D LTR MaLR 6 182 -323 740 164 249 10 chr6 63635749 63635950 -118779292 + MSTA LTR MaLR 180 428 0 2613 124 0 0 chr6 63635952 63636355 -118778887 + THE1C-int LTR MaLR 3 405 -1175 1306 111 0 0 chr6 63636368 63636539 -118778703 - AluSg/x SINE Alu -2 310 140 6145 169 31 8 chr6 63636600 63637738 -118777504 + THE1C-int LTR MaLR 417 1580 0 1552 158 97 31 chr6 63637741 63638090 -118777152 + THE1C LTR MaLR 4 375 0 994 191 32 0 chr6 63638090 63638394 -118776848 + L1MA7 LINE L1 5861 6280 -11 227 170 38 0 chr6 63638399 63638452 -118776790 + (TA)n Simple_repeat Simple_repeat 1 55 0 21 36 0 0 chr6 63638513 63638541 -118776701 + AT_rich Low_complexity Low_complexity 1 28 0 282 206 0 0 chr6 63638916 63638979 -118776263 + (TA)n Simple_repeat Simple_repeat 1 63 0 1322 319 80 40 chr6 63639194 63639844 -118775398 + MER115 DNA AcHobo 8 683 -10 2485 132 24 2 chr6 63640285 63640711 -118774531 + L1MA5A LINE L1 5860 6294 -3 2038 115 11 0 chr6 63640900 63641226 -118774016 + AluSp SINE Alu 1 329 0 206 241 0 0 chr6 63641405 63641459 -118773783 + (TTA)n Simple_repeat Simple_repeat 3 56 0 30 0 0 0 chr6 63643276 63643306 -118771936 + AT_rich Low_complexity Low_complexity 1 30 0 7024 65 3 4 chr6 63643389 63644348 -118770894 - L1P LINE L1 -1689 4457 3500 6852 61 3 3 chr6 63644348 63645925 -118769317 + L1PA6 LINE L1 4598 6152 -2 1826 192 13 18 chr6 63646570 63646961 -118768281 + MLT1B LTR MaLR 1 389 -1 25 0 0 0 chr6 63647220 63647245 -118767997 + AT_rich Low_complexity Low_complexity 1 25 0 284 364 92 0 chr6 63647508 63647681 -118767561 - MIR SINE MIR -11 251 63 240 264 0 0 chr6 63647855 63647942 -118767300 + (TA)n Simple_repeat Simple_repeat 2 88 0 31 58 0 0 chr6 63648016 63648068 -118767174 + AT_rich Low_complexity Low_complexity 1 52 0 984 174 0 66 chr6 63649725 63649843 -118765399 - MLT1C LTR MaLR -9 458 359 2155 121 7 0 chr6 63649843 63650150 -118765092 - AluY SINE Alu -2 309 1 984 174 0 66 chr6 63650150 63650243 -118764999 - MLT1C LTR MaLR -108 359 261 570 114 18 44 chr6 63650243 63650357 -118764885 - L1M2 LINE L1 -799 5513 5403 * 592 238 12 6 chr6 63650351 63650511 -118764731 + L1MA9 LINE L1 5881 6041 -271 341 264 23 0 chr6 63650648 63650735 -118764507 + L1PA16 LINE L1 2082 2170 -5411 2291 99 3 3 chr6 63650882 63651184 -118764058 + AluSx SINE Alu 1 302 -10 7925 237 89 25 chr6 63651278 63653602 -118761640 + L1PA16 LINE L1 2182 4356 -3248 2080 104 0 4 chr6 63653602 63653896 -118761346 + AluSg SINE Alu 14 306 0 7925 237 89 25 chr6 63653896 63656575 -118758667 + L1PA16 LINE L1 4356 7604 0 331 267 59 0 chr6 63656597 63656732 -118758510 + L1MA9 LINE L1 6169 6311 -1 219 175 0 0 chr6 63657452 63657492 -118757750 - MER5B DNA MER1_type 0 178 139 205 165 0 47 chr6 63657503 63657588 -118757654 + (TAGA)n Simple_repeat Simple_repeat 3 83 0 204 268 93 41 chr6 63657639 63657736 -118757506 + MER5B DNA MER1_type 77 178 0 1865 100 6 103 chr6 63658876 63659216 -118756026 - AluSx SINE Alu -5 307 1 21 0 0 0 chr6 63659892 63659913 -118755329 + AT_rich Low_complexity Low_complexity 1 21 0 1773 246 28 18 chr6 63660271 63660771 -118754471 + MLT1D LTR MaLR 1 505 0 2385 86 0 0 chr6 63660951 63661255 -118753987 - AluSx SINE Alu -8 304 1 253 214 0 43 chr6 63661658 63661728 -118753514 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 30 83 0 0 chr6 63662497 63662569 -118752673 + AT_rich Low_complexity Low_complexity 1 72 0 462 332 9 57 chr6 63663282 63663493 -118751749 + MIR SINE MIR 2 202 -60 211 189 0 0 chr6 63663530 63663567 -118751675 + GA-rich Low_complexity Low_complexity 2 38 0 1980 198 31 8 chr6 63664835 63665219 -118750023 - MSTD LTR MaLR -3 393 1 616 143 0 42 chr6 63665960 63666079 -118749163 + L1PA14 LINE L1 6044 6157 -4 47 61 0 0 chr6 63666155 63666237 -118749005 + AT_rich Low_complexity Low_complexity 1 82 0 26 50 0 0 chr6 63666443 63666483 -118748759 + AT_rich Low_complexity Low_complexity 1 40 0 29 47 0 0 chr6 63667447 63667490 -118747752 + AT_rich Low_complexity Low_complexity 1 43 0 303 28 0 0 chr6 63667557 63667593 -118747649 + (CA)n Simple_repeat Simple_repeat 2 37 0 1728 218 31 0 chr6 63667738 63668096 -118747146 + MLT2B3 LTR ERVL 133 501 -53 240 35 0 0 chr6 63668103 63668132 -118747110 + (TC)n Simple_repeat Simple_repeat 2 30 0 215 130 0 43 chr6 63668133 63668179 -118747063 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr6 63668356 63668388 -118746854 + AT_rich Low_complexity Low_complexity 1 32 0 343 203 0 0 chr6 63668736 63668800 -118746442 - U4 snRNA snRNA -81 64 1 25 31 0 0 chr6 63668870 63668902 -118746340 + AT_rich Low_complexity Low_complexity 1 32 0 267 103 0 0 chr6 63671034 63671073 -118744169 + (TG)n Simple_repeat Simple_repeat 2 40 0 555 333 105 6 chr6 63671128 63671479 -118743763 - LTR16B LTR ERVL -31 433 48 993 208 36 88 chr6 63671609 63671994 -118743248 + MLT1A1 LTR MaLR 1 365 0 1295 179 4 50 chr6 63672098 63672489 -118742753 - L1M LINE L1 -740 5428 5067 * 3673 193 26 32 chr6 63672472 63673383 -118741859 + L1MA10 LINE L1 5420 6325 -9 25 51 0 0 chr6 63674113 63674152 -118741090 + AT_rich Low_complexity Low_complexity 1 39 0 233 273 0 0 chr6 63674258 63674313 -118740929 - MLT1I LTR MaLR 0 409 355 259 308 38 23 chr6 63674444 63674577 -118740665 - MLT1I LTR MaLR -270 139 5 271 337 79 48 chr6 63674580 63674832 -118740410 - L3 LINE CR1 -921 656 397 1581 130 22 41 chr6 63674865 63675180 -118740062 - MER44D DNA MER2_type -1 608 30 328 310 39 8 chr6 63675288 63675417 -118739825 + MIR SINE MIR 81 213 -49 325 350 50 17 chr6 63675477 63675737 -118739505 - L1MC4a LINE L1 -303 5818 5637 23 33 0 0 chr6 63675938 63675968 -118739274 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 63676053 63676081 -118739161 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 63676373 63676402 -118738840 + AT_rich Low_complexity Low_complexity 1 29 0 228 253 77 0 chr6 63676458 63676549 -118738693 + MLT1I LTR MaLR 312 409 0 1833 123 0 4 chr6 63676851 63677119 -118738123 - AluSg SINE Alu -43 267 1 420 93 0 0 chr6 63677130 63677184 -118738058 - Alu SINE Alu -258 60 7 2263 81 14 7 chr6 63677584 63677880 -118737362 - AluY SINE Alu -13 298 1 1867 157 3 3 chr6 63677882 63678176 -118737066 - AluJo SINE Alu -18 294 1 2549 36 3 0 chr6 63678944 63679253 -118735989 + L1PA2 LINE L1 5846 6155 0 1400 191 102 0 chr6 63679440 63679696 -118735546 + AluJb SINE Alu 1 282 -30 258 32 0 0 chr6 63679696 63679727 -118735515 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 1734 173 21 0 chr6 63679750 63680034 -118735208 + AluJb SINE Alu 1 290 -22 517 181 95 0 chr6 63680043 63680159 -118735083 - MER3 DNA MER1_type -61 148 22 1557 196 14 17 chr6 63680161 63680316 -118734926 - AluJb SINE Alu -21 291 136 2292 99 0 10 chr6 63680316 63680618 -118734624 - AluSg SINE Alu -11 299 1 1557 196 14 17 chr6 63680618 63680753 -118734489 - AluJb SINE Alu -176 136 2 1832 143 13 52 chr6 63680816 63681123 -118734119 + AluSx SINE Alu 1 295 -17 2165 134 3 0 chr6 63681451 63681758 -118733484 + AluSx SINE Alu 1 308 -4 184 351 76 72 chr6 63681791 63682067 -118733175 - L2 LINE L2 -3 3269 2993 1563 144 93 4 chr6 63682084 63682354 -118732888 + AluJo SINE Alu 12 305 -7 850 146 0 8 chr6 63682359 63682489 -118732753 + FLAM_C SINE Alu 7 135 -8 1748 179 0 0 chr6 63682727 63683024 -118732218 + AluJo SINE Alu 1 297 -15 1164 138 5 35 chr6 63683564 63683767 -118731475 + AluJo SINE Alu 24 220 -92 466 167 83 21 chr6 63684155 63684251 -118730991 - AluSg/x SINE Alu -14 298 197 1200 125 0 0 chr6 63684251 63684411 -118730831 + AluSg/x SINE Alu 139 298 -14 1915 159 10 19 chr6 63684421 63684735 -118730507 + AluJo SINE Alu 1 311 -1 226 265 98 39 chr6 63684738 63684840 -118730402 + MER5A DNA MER1_type 74 181 -8 * 276 211 0 0 chr6 63684832 63684889 -118730353 + MIR3 SINE MIR 147 203 -5 858 103 0 0 chr6 63685048 63685165 -118730077 + FLAM_C SINE Alu 2 118 -15 2071 148 3 0 chr6 63685485 63685836 -118729406 + AluSx SINE Alu 1 352 0 1496 177 43 46 chr6 63686234 63686357 -118728885 + AluJo SINE Alu 2 124 -188 1818 123 17 34 chr6 63686357 63686650 -118728592 + AluSg SINE Alu 1 288 -22 1496 177 43 46 chr6 63686650 63686831 -118728411 + AluJo SINE Alu 124 305 -7 239 316 142 26 chr6 63686851 63687006 -118728236 - L2 LINE L2 -162 3110 2938 1912 122 7 24 chr6 63687050 63687371 -118727871 - AluSx SINE Alu 0 316 1 1504 165 39 54 chr6 63688196 63688323 -118726919 + AluJo SINE Alu 1 128 -184 2078 122 10 0 chr6 63688323 63688611 -118726631 - AluSx SINE Alu -21 291 1 1504 165 39 54 chr6 63688611 63688762 -118726480 + AluJo SINE Alu 128 275 -37 485 0 33 0 chr6 63688767 63688827 -118726415 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 2371 105 0 0 chr6 63689272 63689578 -118725664 - AluSg SINE Alu -4 306 1 1872 140 0 0 chr6 63689616 63689888 -118725354 - AluSx SINE Alu -2 310 39 1599 101 27 0 chr6 63690409 63690727 -118724515 + L1P4 LINE L1 5161 5485 -683 2235 102 0 7 chr6 63690728 63691023 -118724219 + AluSx SINE Alu 2 294 -18 1911 226 85 62 chr6 63691244 63691353 -118723889 + MER82 DNA MER2_type 79 184 -469 2076 122 0 46 chr6 63691353 63691657 -118723585 + AluSx SINE Alu 1 290 -22 1911 226 85 62 chr6 63691657 63692109 -118723133 + MER82 DNA MER2_type 184 653 0 844 132 16 99 chr6 63692776 63692958 -118722284 - FAM SINE Alu -11 174 8 431 252 50 8 chr6 63693019 63693138 -118722104 + MLT1G1 LTR MaLR 16 139 -456 2415 112 25 6 chr6 63693237 63693594 -118721648 + THE1B LTR MaLR 1 364 0 9890 102 60 43 chr6 63693595 63695142 -118720100 + THE1B-int LTR MaLR 2 1574 -6 1346 108 49 5 chr6 63695149 63695352 -118719890 + THE1B LTR MaLR 3 214 -150 753 177 15 0 chr6 63695361 63695491 -118719751 - FLAM_C SINE Alu -1 132 1 598 165 0 0 chr6 63695491 63695594 -118719648 - AluSp/q SINE Alu -1 312 210 21 0 0 0 chr6 63698630 63698651 -118716591 + AT_rich Low_complexity Low_complexity 1 21 0 268 240 115 19 chr6 63699059 63699163 -118716079 + L2 LINE L2 3104 3217 -96 1683 174 66 0 chr6 63699169 63699473 -118715769 + MER2 DNA MER2_type 1 324 -21 1306 122 91 0 chr6 63699473 63699694 -118715548 + L1MA6 LINE L1 6056 6296 -4 23 33 0 0 chr6 63699710 63699740 -118715502 + AT_rich Low_complexity Low_complexity 1 30 0 1558 209 13 73 chr6 63699976 63700020 -118715222 + MLT1A2 LTR MaLR 1 46 -328 2545 58 3 13 chr6 63700020 63700330 -118714912 + AluY SINE Alu 1 307 -4 1558 209 13 73 chr6 63700330 63700614 -118714628 + MLT1A2 LTR MaLR 46 303 -71 1988 155 30 0 chr6 63700614 63700917 -118714325 - AluSx SINE Alu 0 312 1 1558 209 13 73 chr6 63700917 63700985 -118714257 + MLT1A2 LTR MaLR 303 374 0 960 173 81 20 chr6 63701005 63701136 -118714106 + MER3 DNA MER1_type 1 149 -60 2534 63 0 0 chr6 63701136 63701435 -118713807 - AluY SINE Alu -12 299 1 960 173 81 20 chr6 63701435 63701500 -118713742 + MER3 DNA MER1_type 149 209 0 25 51 0 0 chr6 63702046 63702085 -118713157 + AT_rich Low_complexity Low_complexity 1 39 0 1035 225 126 48 chr6 63702824 63703446 -118711796 + LTR41 LTR ERVL 1 773 0 479 229 8 8 chr6 63703849 63703967 -118711275 + LTR37B LTR ERV1 351 468 0 2529 73 0 3 chr6 63704074 63704377 -118710865 + AluY SINE Alu 1 302 -9 931 223 28 14 chr6 63704442 63704657 -118710585 + MER20 DNA MER1_type 1 218 -1 24 0 0 0 chr6 63704788 63704812 -118710430 + AT_rich Low_complexity Low_complexity 1 24 0 605 228 6 56 chr6 63706174 63706336 -118708906 - MER20 DNA MER1_type -6 213 60 1043 249 194 58 chr6 63706740 63707019 -118708223 + MLT1E LTR MaLR 1 241 -352 2193 132 33 36 chr6 63707019 63707384 -118707858 + THE1B LTR MaLR 1 364 0 1043 249 194 58 chr6 63707384 63707626 -118707616 + MLT1E LTR MaLR 241 593 0 1003 267 30 18 chr6 63707804 63708137 -118707105 + MER90 LTR ERV1 40 376 -199 2095 156 49 42 chr6 63708144 63708700 -118706542 - MLT2A2 LTR ERVL 0 554 1 469 256 35 74 chr6 63708701 63708904 -118706338 + MER90 LTR ERV1 420 614 0 2353 85 0 3 chr6 63709875 63710180 -118705062 + AluSg SINE Alu 1 304 -6 1961 158 3 3 chr6 63710189 63710500 -118704742 + AluSx SINE Alu 1 311 -1 686 130 122 16 chr6 63710671 63710794 -118704448 - FLAM_C SINE Alu -2 141 6 2020 137 3 7 chr6 63710822 63711121 -118704121 - AluSx SINE Alu -14 298 1 2220 102 10 3 chr6 63711166 63711461 -118703781 + AluSg SINE Alu 1 297 -13 308 214 114 0 chr6 63711798 63711868 -118703374 - MER21B LTR ERV1 -289 574 497 21 0 0 0 chr6 63711916 63711937 -118703305 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 63712163 63712192 -118703050 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 63712249 63712271 -118702971 + AT_rich Low_complexity Low_complexity 1 22 0 217 366 20 10 chr6 63712362 63712463 -118702779 - MIR SINE MIR -87 121 20 2330 98 0 3 chr6 63712479 63712776 -118702466 - AluSq SINE Alu -17 296 1 303 68 0 0 chr6 63712929 63712973 -118702269 + L1MA3 LINE L1 6262 6305 0 21 0 0 0 chr6 63712973 63712994 -118702248 + AT_rich Low_complexity Low_complexity 1 21 0 1627 135 4 4 chr6 63712998 63713228 -118702014 + AluSx SINE Alu 35 264 -48 2228 77 0 40 chr6 63713479 63713777 -118701465 + AluY SINE Alu 1 286 -25 2313 208 165 63 chr6 63713782 63714049 -118701193 + MER21B LTR ERV1 15 253 -610 1911 152 16 13 chr6 63714049 63714352 -118700890 - AluJo SINE Alu -8 304 1 2313 208 165 63 chr6 63714352 63714800 -118700442 + MER21B LTR ERV1 253 803 -60 1613 170 0 51 chr6 63714807 63714901 -118700341 + AluJb SINE Alu 13 110 -202 2356 72 28 3 chr6 63714901 63715192 -118700050 - AluY SINE Alu -13 298 1 1613 170 0 51 chr6 63715192 63715408 -118699834 + AluJb SINE Alu 110 307 -5 515 253 174 11 chr6 63715491 63715681 -118699561 + L1MC5 LINE L1 7690 7910 -51 2241 90 0 14 chr6 63715702 63716021 -118699221 + AluY SINE Alu 2 316 0 2144 118 0 7 chr6 63716028 63716324 -118698918 + AluSx SINE Alu 1 294 -18 282 91 76 0 chr6 63716456 63716522 -118698720 + T-rich Low_complexity Low_complexity 1 71 0 2139 124 0 0 chr6 63716547 63716859 -118698383 - AluSq SINE Alu 0 312 1 2110 133 20 0 chr6 63716886 63717187 -118698055 + AluSc SINE Alu 1 307 -2 2311 98 0 3 chr6 63717187 63717481 -118697761 + AluSg SINE Alu 1 294 -16 1986 141 3 0 chr6 63717509 63717813 -118697429 - AluSq SINE Alu -8 305 1 715 190 325 8 chr6 63718270 63718507 -118696735 + MLT1E2 LTR MaLR 87 398 -228 1737 169 24 3 chr6 63718642 63718937 -118696305 + AluJb SINE Alu 3 303 -9 2499 62 0 7 chr6 63718937 63719246 -118695996 + AluY SINE Alu 1 307 -4 277 322 7 35 chr6 63719498 63719641 -118695601 + L1ME LINE L1 5478 5616 -505 1026 110 27 0 chr6 63720477 63720623 -118694619 - AluSg/x SINE Alu -14 298 149 2016 82 15 19 chr6 63720629 63720943 -118694299 - AluSx SINE Alu 0 312 20 2188 119 0 3 chr6 63720954 63721248 -118693994 - AluSg SINE Alu -9 301 9 712 207 14 0 chr6 63722347 63722487 -118692755 - AluSg/x SINE Alu -16 294 153 186 133 0 0 chr6 63722743 63722773 -118692469 + (CATA)n Simple_repeat Simple_repeat 2 31 0 284 175 16 0 chr6 63722824 63722887 -118692355 + (TA)n Simple_repeat Simple_repeat 1 64 0 2852 163 24 11 chr6 63723048 63723589 -118691653 + L1MA4 LINE L1 5742 6289 -11 274 295 21 21 chr6 63724726 63724821 -118690421 + MER69 DNA AcHobo 50 144 -2382 362 200 12 0 chr6 63725619 63725699 -118689543 - MLT1H LTR MaLR -3 546 466 239 321 36 0 chr6 63725827 63725911 -118689331 - MLT1H LTR MaLR -296 253 167 1855 200 99 32 chr6 63727843 63728278 -118686964 + MLT2B1 LTR ERVL 1 464 -56 303 140 0 0 chr6 63728283 63728333 -118686909 + (CA)n Simple_repeat Simple_repeat 1 50 0 255 82 102 20 chr6 63728333 63728368 -118686874 + Ricksha DNA DNA 865 903 -1143 1322 251 89 0 chr6 63728368 63728718 -118686524 + ERVL-B1 LTR ERVL 2 382 -5382 216 209 0 0 chr6 63729473 63729516 -118685726 + (TAA)n Simple_repeat Simple_repeat 3 45 0 2262 111 19 0 chr6 63729692 63729999 -118685243 + AluSq SINE Alu 1 313 0 21 0 0 0 chr6 63732603 63732624 -118682618 + AT_rich Low_complexity Low_complexity 1 21 0 888 181 39 0 chr6 63732678 63732860 -118682382 - MER5A DNA MER1_type 0 189 1 197 361 45 13 chr6 63732914 63733069 -118682173 + MIR SINE MIR 57 216 -46 247 230 41 83 chr6 63733240 63733444 -118681798 + L1 LINE L1 4628 4820 -1326 5335 106 29 7 chr6 63733457 63734220 -118681022 + LTR17 LTR ERV1 1 780 0 393 228 0 0 chr6 63734252 63734388 -118680854 + (TA)n Simple_repeat Simple_repeat 2 137 0 339 277 61 30 chr6 63734583 63734814 -118680428 + L1MC4a LINE L1 5122 5359 -787 234 91 0 0 chr6 63734814 63734847 -118680395 + (GAA)n Simple_repeat Simple_repeat 1 33 0 521 304 132 7 chr6 63734896 63735185 -118680057 + L1MC4a LINE L1 5491 5815 -1993 393 156 101 37 chr6 63735236 63735345 -118679897 + L1MEd LINE L1 72 187 -5932 263 297 71 50 chr6 63735395 63735577 -118679665 + L1MEd LINE L1 270 455 -5664 * 499 305 92 17 chr6 63735575 63736200 -118679042 + L1ME3A LINE L1 5265 5952 -218 683 283 0 11 chr6 63737688 63737875 -118677367 - MER5A DNA MER1_type -4 185 1 22 35 0 0 chr6 63737992 63738021 -118677221 + AT_rich Low_complexity Low_complexity 1 29 0 2581 72 0 0 chr6 63738100 63738405 -118676837 + AluSc SINE Alu 1 305 -4 992 204 195 13 chr6 63738613 63738931 -118676311 + L1MC4a LINE L1 6579 6954 -854 * 1029 195 68 152 chr6 63738925 63739545 -118675697 + L1MC4 LINE L1 7475 8042 0 30 69 0 0 chr6 63739551 63739609 -118675633 + AT_rich Low_complexity Low_complexity 1 58 0 626 236 89 16 chr6 63740308 63740499 -118674743 + MIR SINE MIR 34 238 -24 1978 124 21 7 chr6 63740683 63740973 -118674269 - AluSx SINE Alu -18 294 1 2436 71 0 7 chr6 63741904 63742213 -118673029 + AluY SINE Alu 1 307 -4 30 0 0 0 chr6 63745778 63745808 -118669434 + AT_rich Low_complexity Low_complexity 1 30 0 751 277 248 7 chr6 63745812 63746260 -118668982 - L1ME3A LINE L1 -6 6164 5609 246 304 165 21 chr6 63746745 63746939 -118668303 + MIR SINE MIR 41 262 0 2194 168 31 8 chr6 63748923 63749310 -118665932 - MER57A LTR ERV1 0 403 8 189 0 0 0 chr6 63749378 63749399 -118665843 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 207 185 37 37 chr6 63750325 63750406 -118664836 + (TA)n Simple_repeat Simple_repeat 1 81 0 227 233 110 0 chr6 63750406 63750479 -118664763 - L1MC/D LINE L1 -2031 5777 5697 735 326 127 6 chr6 63750484 63750800 -118664442 + L2 LINE L2 2956 3309 -4 738 255 154 0 chr6 63750803 63751050 -118664192 - L1MC/D LINE L1 -2129 5679 5395 2400 63 0 7 chr6 63751248 63751549 -118663693 - AluY SINE Alu -12 299 1 1910 140 14 0 chr6 63751779 63752072 -118663170 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr6 63753485 63753523 -118661719 + AT_rich Low_complexity Low_complexity 1 38 0 3459 216 27 42 chr6 63753555 63754547 -118660695 - L1ME1 LINE L1 -5 6230 5256 4294 247 72 19 chr6 63754560 63755973 -118659269 - L1ME1 LINE L1 -4874 1522 35 270 239 0 30 chr6 63756513 63756580 -118658662 - MIR SINE MIR -80 182 118 230 379 42 11 chr6 63756877 63756972 -118658270 + L2 LINE L2 3175 3272 0 493 278 232 3 chr6 63757220 63757573 -118657669 + L2 LINE L2 2543 2976 -338 1424 179 31 82 chr6 63759059 63759449 -118655793 + MLT1A2 LTR MaLR 4 373 -1 25 0 0 0 chr6 63759697 63759722 -118655520 + AT_rich Low_complexity Low_complexity 1 25 0 386 315 107 75 chr6 63760227 63760908 -118654334 - L2 LINE L2 -8 3264 2545 300 358 82 31 chr6 63761259 63761552 -118653690 + L1M4 LINE L1 3490 3797 -2349 2030 168 5 35 chr6 63761777 63762153 -118653089 + MLT1A1 LTR MaLR 1 365 0 2162 203 91 0 chr6 63762311 63762774 -118652468 - MLT1D LTR MaLR 0 505 1 420 339 33 6 chr6 63762831 63763014 -118652228 + MIR SINE MIR 31 218 -44 279 258 64 45 chr6 63763027 63763291 -118651951 + HAL1 LINE L1 993 1261 -1246 2200 116 7 0 chr6 63763325 63763635 -118651607 + AluSx SINE Alu 1 312 0 891 265 176 6 chr6 63763721 63764061 -118651181 + HAL1 LINE L1 1491 1888 -619 459 260 219 16 chr6 63764062 63764254 -118650988 - MLT1J LTR MaLR -165 346 116 426 345 116 13 chr6 63764331 63764563 -118650679 - MIR SINE MIR -5 257 2 213 200 0 0 chr6 63765278 63765323 -118649919 + (TG)n Simple_repeat Simple_repeat 1 45 0 1895 67 0 31 chr6 63765912 63766167 -118649075 + AluY SINE Alu 63 309 -2 323 261 68 0 chr6 63767877 63767965 -118647277 - MLT1J2 LTR MaLR -13 437 344 611 304 103 10 chr6 63768084 63768288 -118646954 - MER58A DNA MER1_type -1 223 1 432 314 33 7 chr6 63768301 63768454 -118646788 - MLT1J2 LTR MaLR -267 183 27 2443 124 30 3 chr6 63769199 63769563 -118645679 + THE1C LTR MaLR 2 375 0 666 267 129 23 chr6 63771601 63771813 -118643429 + MIR SINE MIR 2 236 -26 536 252 0 0 chr6 63771813 63771916 -118643326 + MER5A DNA MER1_type 3 105 -84 212 293 51 96 chr6 63771839 63771996 -118643246 - MER5A DNA MER1_type -16 173 24 * 1932 113 3 77 chr6 63772193 63772503 -118642739 - AluSx SINE Alu -20 292 6 481 354 77 11 chr6 63774263 63774537 -118640705 + L3 LINE CR1 1173 1464 -113 1579 190 65 86 chr6 63774773 63775308 -118639934 + MER39 LTR ERV1 1 707 0 * 1819 219 50 44 chr6 63775308 63775851 -118639391 - MER77 LTR ERV1 -7 598 1 221 283 0 54 chr6 63775960 63776052 -118639190 - MER5B DNA MER1_type -84 94 8 348 264 18 27 chr6 63776973 63777083 -118638159 - L2 LINE L2 -12 3301 3193 189 376 12 0 chr6 63777394 63777479 -118637763 + L2 LINE L2 2564 2649 -665 197 294 99 41 chr6 63777585 63777806 -118637436 + L2 LINE L2 2830 3063 -209 32 0 0 0 chr6 63778059 63778091 -118637151 + AT_rich Low_complexity Low_complexity 1 32 0 237 340 21 91 chr6 63779181 63779466 -118635776 + L2 LINE L2 2905 3169 -103 2203 123 3 3 chr6 63780411 63780721 -118634521 + AluSx SINE Alu 1 310 -2 1235 182 65 40 chr6 63780828 63780869 -118634373 - MLT1D LTR MaLR 0 505 467 1810 181 3 7 chr6 63780869 63781172 -118634070 + AluJo SINE Alu 3 304 -8 1235 182 65 40 chr6 63781172 63781487 -118633755 - MLT1D LTR MaLR -38 467 75 2592 208 19 53 chr6 63781487 63781528 -118633714 - MER68 LTR ERV1 0 562 521 5270 40 0 0 chr6 63781528 63782155 -118633087 - L1PA5 LINE L1 0 6154 5528 2592 208 19 53 chr6 63782155 63782695 -118632547 - MER68 LTR ERV1 -41 521 1 302 211 0 0 chr6 63782695 63782747 -118632495 - MLT1D LTR MaLR -426 79 28 3131 70 2 0 chr6 63782748 63783161 -118632081 - L1PA7 LINE L1 -3 6151 5738 4297 68 9 4 chr6 63783161 63784028 -118631214 - L1P3 LINE L1 -341 5813 4944 584 344 74 45 chr6 63784184 63784963 -118630279 + L2 LINE L2 2405 3272 0 692 208 3 0 chr6 63784978 63785110 -118630132 + L1MB8 LINE L1 5537 5672 -495 * 813 183 43 55 chr6 63785085 63785320 -118629922 + L1MB8 LINE L1 5947 6178 0 1311 236 112 50 chr6 63785482 63785918 -118629324 - Charlie1a DNA MER1_type -992 463 1 1729 183 7 7 chr6 63786070 63786365 -118628877 - AluJo SINE Alu -12 300 6 392 161 0 11 chr6 63787650 63787737 -118627505 + GA-rich Low_complexity Low_complexity 4 89 0 640 250 44 17 chr6 63788371 63788551 -118626691 + MIR SINE MIR 74 258 -4 281 93 19 0 chr6 63788602 63788656 -118626586 + (GA)n Simple_repeat Simple_repeat 2 56 0 580 326 23 27 chr6 63790076 63790297 -118624945 - LTR40a LTR ERVL -143 376 157 375 274 47 0 chr6 63790312 63790418 -118624824 - LTR40a LTR ERVL -321 198 88 352 304 178 4 chr6 63790458 63790646 -118624596 + MIR SINE MIR 11 229 -33 448 291 75 42 chr6 63790665 63790930 -118624312 - MLT1J LTR MaLR 0 511 238 352 256 13 0 chr6 63791082 63791160 -118624082 - MLT1L LTR MaLR -536 79 1 521 250 146 26 chr6 63792159 63792351 -118622891 - MER58C DNA MER1_type 0 215 1 427 208 21 70 chr6 63792382 63792657 -118622585 - Charlie7 DNA MER1_type 0 2612 8 402 194 117 0 chr6 63793804 63793907 -118621335 + LTR50 LTR ERVL 650 764 -31 * 555 299 119 6 chr6 63793905 63794348 -118620894 - LTR50 LTR ERVL -143 652 87 239 255 60 87 chr6 63794877 63795026 -118620216 + MLT1K LTR MaLR 279 423 -165 194 250 107 0 chr6 63795235 63795291 -118619951 + MIR SINE MIR 153 214 -48 2244 82 3 35 chr6 63795941 63796258 -118618984 + AluY SINE Alu 4 310 -1 1219 89 0 58 chr6 63796259 63796449 -118618793 + AluSc SINE Alu 131 309 0 899 288 102 38 chr6 63797030 63797136 -118618106 + L2 LINE L2 2219 2317 -997 1778 160 5 61 chr6 63797136 63797512 -118617730 + THE1A LTR MaLR 1 355 0 899 288 102 38 chr6 63797512 63797926 -118617316 + L2 LINE L2 2317 2772 -542 1569 184 20 20 chr6 63798095 63798388 -118616854 - AluJo SINE Alu -17 295 3 434 280 136 47 chr6 63798501 63798737 -118616505 + MIR SINE MIR 1 257 -5 461 320 32 15 chr6 63799333 63799530 -118615712 - MIR SINE MIR -21 241 37 359 178 89 10 chr6 63799743 63799844 -118615398 - Charlie4 DNA MER1_type -1267 694 586 2167 75 18 7 chr6 63800412 63800713 -118614529 - AluY SINE Alu 0 304 1 245 316 35 34 chr6 63801390 63801624 -118613618 - MLT1F LTR MaLR -225 324 20 668 266 14 56 chr6 63801635 63801849 -118613393 + MLT1J LTR MaLR 6 210 -301 1744 223 55 55 chr6 63801858 63802387 -118612855 - MLT1F LTR MaLR -13 529 1 297 245 240 25 chr6 63802986 63803182 -118612060 + MIR SINE MIR 13 250 -12 309 51 0 0 chr6 63803288 63803327 -118611915 + (TG)n Simple_repeat Simple_repeat 2 40 0 255 298 134 59 chr6 63803687 63804474 -118610768 - L2 LINE L2 -188 3084 2245 32 57 0 0 chr6 63804946 63804999 -118610243 + AT_rich Low_complexity Low_complexity 1 53 0 311 302 54 40 chr6 63805049 63805198 -118610044 - L1MC4a LINE L1 -1883 5925 5775 1175 240 49 32 chr6 63805304 63805747 -118609495 + LTR40a LTR ERVL 1 450 -12 478 292 139 1 chr6 63805793 63805992 -118609250 - MIR SINE MIR -3 259 34 26 0 0 0 chr6 63806182 63806208 -118609034 + AT_rich Low_complexity Low_complexity 1 26 0 209 366 24 12 chr6 63806222 63806304 -118608938 - L2 LINE L2 -63 3209 3127 318 115 0 0 chr6 63806634 63806686 -118608556 + (CA)n Simple_repeat Simple_repeat 1 52 0 22 56 0 0 chr6 63807662 63807698 -118607544 + AT_rich Low_complexity Low_complexity 1 36 0 261 230 27 74 chr6 63808999 63809147 -118606095 - Charlie7 DNA MER1_type -1 2611 2471 845 215 0 13 chr6 63809285 63809443 -118605799 - FRAM SINE Alu -10 156 1 335 281 0 0 chr6 63809453 63809549 -118605693 - Charlie7 DNA MER1_type -1914 698 603 2048 104 60 0 chr6 63809568 63809904 -118605338 - L1MA5A LINE L1 -5 6292 5937 5222 158 35 15 chr6 63809917 63810441 -118604801 - L1MA4 LINE L1 -4 6296 5784 306 0 0 0 chr6 63810441 63810475 -118604767 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1754 173 11 11 chr6 63810475 63810758 -118604484 - AluSx SINE Alu -29 283 1 5222 158 35 15 chr6 63810758 63811951 -118603291 - L1MA4 LINE L1 -515 5785 4543 1316 275 103 19 chr6 63811951 63812493 -118602749 - Charlie7 DNA MER1_type -1995 617 30 190 228 101 139 chr6 63814190 63814348 -118600894 + MER5A DNA MER1_type 2 164 -25 22 0 0 0 chr6 63818028 63818050 -118597192 + AT_rich Low_complexity Low_complexity 1 22 0 2038 139 0 0 chr6 63818061 63818356 -118596886 + AluSx SINE Alu 1 295 -17 28 61 0 0 chr6 63819220 63819269 -118595973 + AT_rich Low_complexity Low_complexity 1 49 0 605 162 142 0 chr6 63819732 63819854 -118595388 + MLT1G1 LTR MaLR 1 97 -458 476 210 109 0 chr6 63819854 63819973 -118595269 - MIR SINE MIR -46 216 85 201 147 0 0 chr6 63820040 63820074 -118595168 + MIR SINE MIR 229 262 0 273 118 0 0 chr6 63821553 63821604 -118593638 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 4297 124 9 3 chr6 63821682 63822329 -118592913 - MER39B LTR ERV1 0 653 3 20872 166 62 74 chr6 63822403 63823663 -118591579 - MER39B-int LTR ERV1 -165 6166 4892 2116 116 17 7 chr6 63823663 63823956 -118591286 - AluSq SINE Alu -17 296 1 20872 166 62 74 chr6 63823956 63825829 -118589413 - MER39B-int LTR ERV1 -1439 4892 2997 2216 92 0 23 chr6 63825829 63826134 -118589108 - AluY SINE Alu -13 298 1 20872 166 62 74 chr6 63826134 63828364 -118586878 - MER39B-int LTR ERV1 -3334 2997 868 2937 176 80 0 chr6 63828396 63828923 -118586319 - MER39B-int LTR ERV1 -5762 569 1 418 139 0 14 chr6 63828925 63828997 -118586245 - MER39B LTR ERV1 -1 594 524 459 136 0 0 chr6 63829045 63829111 -118586131 + MER39B LTR ERV1 586 651 -2 758 266 50 18 chr6 63830159 63830377 -118584865 - MIR SINE MIR -6 256 32 755 190 0 0 chr6 63830422 63830543 -118584699 + AluSp SINE Alu 2 122 -191 198 0 0 0 chr6 63830543 63830565 -118584677 + (T)n Simple_repeat Simple_repeat 1 22 0 180 111 0 0 chr6 63831624 63831651 -118583591 + (CAT)n Simple_repeat Simple_repeat 3 29 0 21 0 0 0 chr6 63832612 63832633 -118582609 + AT_rich Low_complexity Low_complexity 1 21 0 339 256 73 43 chr6 63833479 63833643 -118581599 + L1M4 LINE L1 4417 4585 -1561 25 51 0 0 chr6 63833755 63833794 -118581448 + AT_rich Low_complexity Low_complexity 1 39 0 231 348 104 7 chr6 63833794 63833929 -118581313 + L3 LINE CR1 1420 1567 -10 325 242 71 40 chr6 63834517 63834616 -118580626 + MER5A DNA MER1_type 88 189 0 634 319 239 29 chr6 63835015 63835986 -118579256 - L2 LINE L2 -41 3272 2096 305 286 12 0 chr6 63837100 63837184 -118578058 - MIR SINE MIR -111 151 67 192 349 94 28 chr6 63837335 63837441 -118577801 - MER5B DNA MER1_type 0 178 66 1044 83 0 0 chr6 63837985 63838117 -118577125 + AluY SINE Alu 172 303 -8 419 247 108 114 chr6 63838433 63838793 -118576449 - L1M4 LINE L1 -3111 3035 2678 678 183 29 22 chr6 63838947 63839084 -118576158 + MLT1C LTR MaLR 329 466 -1 2263 327 48 26 chr6 63839350 63840240 -118575002 + L1PA15 LINE L1 1 910 -5877 12408 231 73 8 chr6 63840324 63844579 -118570663 + L1PA15 LINE L1 1333 5929 -868 1492 192 4 4 chr6 63844579 63844850 -118570392 + L1PA15 LINE L1 6540 6815 -1 2200 96 0 26 chr6 63845305 63845617 -118569625 - AluSc SINE Alu -5 304 1 2854 112 2 30 chr6 63845831 63846267 -118568975 - MSTA LTR MaLR -3 425 2 728 116 16 0 chr6 63846356 63846477 -118568765 + L1PA16 LINE L1 6043 6165 -1 231 205 128 13 chr6 63847742 63847820 -118567422 - MER34 LTR ERV1 -6 536 450 22 0 0 0 chr6 63848012 63848034 -118567208 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 63848128 63848154 -118567088 + AT_rich Low_complexity Low_complexity 1 26 0 230 140 0 40 chr6 63848299 63848349 -118566893 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 2282 97 13 0 chr6 63848589 63848889 -118566353 + AluSg SINE Alu 2 305 -5 288 133 0 0 chr6 63851854 63851914 -118563328 + (CCTG)n Simple_repeat Simple_repeat 2 61 0 2080 94 0 7 chr6 63851917 63852193 -118563049 - AluSq SINE Alu -39 274 1 788 142 11 95 chr6 63852470 63852511 -118562731 - L1MB3 LINE L1 -3 6180 6137 1914 129 36 0 chr6 63852511 63852791 -118562451 + AluSx SINE Alu 1 290 -22 788 142 11 95 chr6 63852791 63852939 -118562303 - L1MB3 LINE L1 -46 6137 6007 250 177 9 66 chr6 63852940 63853047 -118562195 + MER34C LTR ERV1 83 232 -353 414 56 0 0 chr6 63853239 63853293 -118561949 - Alu SINE Alu -11 299 246 540 194 67 42 chr6 63853294 63853459 -118561783 + MER34 LTR ERV1 372 540 -2 3068 149 41 11 chr6 63853461 63854023 -118561219 - L1MB3 LINE L1 -216 5967 5389 2828 218 65 49 chr6 63854095 63854656 -118560586 - L1ME1 LINE L1 -5 6161 5611 2246 218 55 33 chr6 63854656 63855198 -118560044 - MLT2B3 LTR ERVL 0 554 1 2828 218 65 49 chr6 63855198 63855733 -118559509 - L1ME1 LINE L1 -555 5611 5048 563 315 49 20 chr6 63856082 63856285 -118558957 + L1PA13 LINE L1 802 1010 -6564 * 1799 292 32 2 chr6 63856281 63856873 -118558369 + L1PA13 LINE L1 2179 2788 -4793 1744 165 0 7 chr6 63856896 63857168 -118558074 + AluJb SINE Alu 12 281 -31 530 167 0 0 chr6 63857190 63857292 -118557950 + L1PA13 LINE L1 2778 2879 -4702 3325 15 0 0 chr6 63857293 63857848 -118557394 - L1PA3 LINE L1 -602 5553 4999 5484 19 0 0 chr6 63857848 63858474 -118556768 + L1PA3 LINE L1 5529 6155 0 12428 247 22 12 chr6 63858482 63861426 -118553816 + L1PA13 LINE L1 2868 5854 -1730 2400 51 13 29 chr6 63861426 63861738 -118553504 + AluY SINE Alu 1 307 -4 12428 247 22 12 chr6 63861738 63862258 -118552984 + L1PA13 LINE L1 5854 6367 -1217 618 170 0 0 chr6 63862258 63862364 -118552878 + AluSg/x SINE Alu 205 310 0 2010 194 131 11 chr6 63862366 63862980 -118552262 + L1M1 LINE L1 1769 2440 -3986 33 43 0 0 chr6 63863078 63863125 -118552117 + AT_rich Low_complexity Low_complexity 1 47 0 851 211 0 17 chr6 63863266 63863446 -118551796 + MER3 DNA MER1_type 1 130 -79 24 53 0 0 chr6 63863572 63863610 -118551632 + AT_rich Low_complexity Low_complexity 1 38 0 261 284 105 67 chr6 63864854 63865093 -118550149 + HAL1b LINE L1 340 587 -761 225 65 0 0 chr6 63866098 63866129 -118549113 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 233 11 67 chr6 63866314 63866404 -118548838 + HAL1b LINE L1 623 707 -641 265 231 46 0 chr6 63867376 63867441 -118547801 - MIR SINE MIR 0 262 195 394 227 8 42 chr6 63867610 63867729 -118547513 + L1ME4a LINE L1 5969 6083 -38 507 350 67 9 chr6 63868537 63868760 -118546482 - MIR SINE MIR -26 236 1 21 0 0 0 chr6 63868867 63868888 -118546354 + AT_rich Low_complexity Low_complexity 1 21 0 1374 284 161 10 chr6 63868908 63869419 -118545823 + MLT2E LTR ERVL 41 628 0 1010 285 25 67 chr6 63869476 63869907 -118545335 - MLT1K LTR MaLR -13 575 163 463 291 14 14 chr6 63871020 63871161 -118544081 + MIR SINE MIR 8 148 -114 957 126 11 77 chr6 63871161 63871343 -118543899 + MER2 DNA MER2_type 1 170 -175 4237 158 14 7 chr6 63871384 63872145 -118543097 + L1MB8 LINE L1 5406 6172 -6 325 319 134 0 chr6 63872881 63873038 -118542204 + MER117 DNA MER1_type 1 178 -19 440 301 107 49 chr6 63873340 63873706 -118541536 + MLT1L LTR MaLR 5 391 -224 2032 200 35 33 chr6 63873963 63874447 -118540795 + LTR45B LTR ERV1 5 489 0 225 65 0 0 chr6 63874453 63874484 -118540758 + (TG)n Simple_repeat Simple_repeat 2 32 0 235 286 107 71 chr6 63874498 63874610 -118540632 - MIR SINE MIR -79 183 68 256 316 86 86 chr6 63874689 63874841 -118540401 - L2 LINE L2 -5 3308 3157 2016 139 0 16 chr6 63874841 63875158 -118540084 + AluSx SINE Alu 1 312 0 256 316 86 86 chr6 63875158 63875435 -118539807 - L2 LINE L2 -155 3158 2879 246 261 292 0 chr6 63875508 63875638 -118539604 - L2 LINE L2 -560 2754 2587 666 320 104 0 chr6 63875639 63875861 -118539381 - Zaphod DNA AcHobo -3639 392 148 2365 104 77 13 chr6 63876310 63876832 -118538410 - MER51A LTR ERV1 0 634 3 204 40 0 0 chr6 63877957 63877982 -118537260 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 252 289 109 23 chr6 63880175 63880303 -118534939 - HAL1 LINE L1 -1070 1437 1299 22 0 0 0 chr6 63881109 63881131 -118534111 + AT_rich Low_complexity Low_complexity 1 22 0 779 176 0 27 chr6 63881160 63881308 -118533934 + Tigger1 DNA MER2_type 23 166 -2252 281 22 152 0 chr6 63881392 63881438 -118533804 + Tigger1 DNA MER2_type 198 250 -2168 * 4368 119 13 53 chr6 63881432 63881950 -118533292 + Tigger1 DNA MER2_type 1695 2175 -243 2101 105 7 14 chr6 63881950 63882246 -118532996 - AluSc SINE Alu -15 294 1 4368 119 13 53 chr6 63882246 63882476 -118532766 + Tigger1 DNA MER2_type 2175 2413 -5 1754 184 83 61 chr6 63883259 63883636 -118531606 - LTR48 LTR ERV1 0 787 419 1924 154 0 37 chr6 63883636 63883960 -118531282 - AluSx SINE Alu 0 312 1 1754 184 83 61 chr6 63883960 63884268 -118530974 - LTR48 LTR ERV1 -368 419 1 24 53 0 0 chr6 63884742 63884780 -118530462 + AT_rich Low_complexity Low_complexity 1 38 0 1682 188 0 25 chr6 63885712 63886031 -118529211 + AluJo SINE Alu 1 311 -1 287 190 0 0 chr6 63888383 63888441 -118526801 + MER53 DNA DNA 1 58 -131 457 161 37 0 chr6 63888724 63888805 -118526437 + MER67D LTR ERV1 5 88 -426 10591 98 9 3 chr6 63888831 63891168 -118524074 - L1PA8 LINE L1 -1 6171 3824 7706 121 17 4 chr6 63891168 63892525 -118522717 + L1PA8 LINE L1 2439 3809 -2337 1267 189 90 90 chr6 63892525 63892891 -118522351 + MER67D LTR ERV1 71 436 -78 226 145 0 145 chr6 63892874 63892936 -118522306 + MER92C LTR ERV1 494 546 -8 * 257 316 13 0 chr6 63892944 63893020 -118522222 - MER5B DNA MER1_type -100 78 2 35 45 0 15 chr6 63893129 63893157 -118522085 + AT_rich Low_complexity Low_complexity 1 28 -38 1552 196 0 7 chr6 63893157 63893437 -118521805 + AluJo SINE Alu 5 282 -30 35 45 0 15 chr6 63893437 63893475 -118521767 + AT_rich Low_complexity Low_complexity 28 66 0 180 271 43 29 chr6 63893777 63893847 -118521395 + L2 LINE L2 3227 3297 -16 6890 184 21 19 chr6 63894062 63896178 -118519064 + L1PA15 LINE L1 4040 6160 -5 181 258 101 11 chr6 63896253 63896342 -118518900 - MIR SINE MIR -68 140 44 389 275 0 0 chr6 63896356 63896436 -118518806 - L2 LINE L2 -2 3270 3191 636 191 53 0 chr6 63896440 63896571 -118518671 - LTR24B LTR ERV1 -17 559 422 * 851 179 34 56 chr6 63896568 63896747 -118518495 - MER20 DNA MER1_type -41 178 4 2293 172 33 14 chr6 63897848 63898272 -118516970 + MSTB1 LTR MaLR 1 432 0 2583 141 29 12 chr6 63900026 63900445 -118514797 - MSTA LTR MaLR 0 428 3 269 324 95 0 chr6 63900898 63901003 -118514239 + MIR SINE MIR 65 179 -83 22 0 0 0 chr6 63901481 63901503 -118513739 + AT_rich Low_complexity Low_complexity 1 22 0 4746 164 10 14 chr6 63901836 63902731 -118512511 - L1MB4 LINE L1 0 6180 5290 264 30 0 0 chr6 63902955 63902988 -118512254 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2399 164 21 7 chr6 63903486 63903906 -118511336 + MSTB LTR MaLR 1 426 0 379 252 49 42 chr6 63904007 63904150 -118511092 - MLT1H LTR MaLR 0 549 406 412 240 12 29 chr6 63904333 63904465 -118510777 - MLT1H LTR MaLR -381 168 1 29 28 0 0 chr6 63905899 63905935 -118509307 + AT_rich Low_complexity Low_complexity 1 36 0 2013 87 59 0 chr6 63906225 63906514 -118508728 - L1PA10 LINE L1 -4 6164 5859 4562 69 10 0 chr6 63906529 63907201 -118508041 + L1PA10 LINE L1 5178 5854 -314 316 226 54 121 chr6 63907411 63907725 -118507517 - L1ME4a LINE L1 -77 6044 5752 226 179 15 15 chr6 63907823 63907890 -118507352 + CT-rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr6 63908541 63908565 -118506677 + AT_rich Low_complexity Low_complexity 1 24 0 234 300 239 0 chr6 63908721 63908851 -118506391 - MIR SINE MIR -13 249 89 269 243 14 0 chr6 63909661 63909731 -118505511 + (TA)n Simple_repeat Simple_repeat 2 72 0 4600 138 72 9 chr6 63910219 63910891 -118504351 - L1MA3 LINE L1 0 7724 6987 1810 116 0 0 chr6 63910891 63911141 -118504101 - AluSc SINE Alu -4 305 56 4600 138 72 9 chr6 63911141 63911315 -118503927 - L1MA3 LINE L1 -737 6987 6825 11893 165 17 106 chr6 63911317 63913427 -118501815 - L1MA3 LINE L1 -897 6668 4372 1404 173 15 34 chr6 63913427 63913693 -118501549 - AluJo SINE Alu -29 283 23 11893 165 17 106 chr6 63913693 63914249 -118500993 - L1MA3 LINE L1 -3193 4372 4028 5037 146 72 35 chr6 63914249 63915282 -118499960 + MER11C LTR ERVK 1 1071 0 11893 165 17 106 chr6 63915282 63915466 -118499776 - L1MA3 LINE L1 -3537 4028 3829 * 16819 142 26 3 chr6 63915465 63918083 -118497159 - L1MA3 LINE L1 -4689 2876 198 537 149 4 30 chr6 63918083 63918256 -118496986 + AluJb SINE Alu 1 220 -92 3750 127 53 7 chr6 63918256 63918839 -118496403 - LTR9 LTR ERV1 0 612 3 537 149 4 30 chr6 63918839 63918913 -118496329 + AluJb SINE Alu 220 294 -18 1077 157 22 5 chr6 63918956 63919141 -118496101 - L1MA3 LINE L1 -7366 199 12 21 0 0 0 chr6 63920489 63920510 -118494732 + AT_rich Low_complexity Low_complexity 1 21 0 371 278 76 42 chr6 63921050 63921194 -118494048 - MIR SINE MIR -108 154 6 1824 162 60 42 chr6 63921658 63922041 -118493201 - MLT1B LTR MaLR 0 390 1 1770 171 0 32 chr6 63923755 63924071 -118491171 - AluJb SINE Alu -6 306 1 577 229 25 45 chr6 63924824 63924981 -118490261 + MIR SINE MIR 2 155 -107 2948 21 0 0 chr6 63924996 63925332 -118489910 - L1PA5 LINE L1 -282 5873 5538 2405 32 0 0 chr6 63925332 63925616 -118489626 + L1PA5 LINE L1 5866 6150 -4 244 232 18 0 chr6 63925629 63925685 -118489557 + MIR SINE MIR 196 252 -10 45 45 0 0 chr6 63925753 63925819 -118489423 + AT_rich Low_complexity Low_complexity 1 66 0 2479 68 0 10 chr6 63926576 63926886 -118488356 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr6 63928254 63928276 -118486966 + AT_rich Low_complexity Low_complexity 1 22 0 499 316 99 0 chr6 63929505 63929717 -118485525 - MER20B DNA MER1_type -256 527 295 201 94 0 0 chr6 63930350 63930382 -118484860 + (CA)n Simple_repeat Simple_repeat 2 33 0 1725 201 22 11 chr6 63930394 63930753 -118484489 + MLT1A1 LTR MaLR 1 363 -2 859 218 37 102 chr6 63930793 63931087 -118484155 - MER20B DNA MER1_type -508 275 1 243 88 0 0 chr6 63932075 63932109 -118483133 + (CATA)n Simple_repeat Simple_repeat 2 35 0 14625 130 25 21 chr6 63932174 63934572 -118480670 - Tigger1 DNA MER2_type 0 2418 11 25 0 0 0 chr6 63935719 63935744 -118479498 + AT_rich Low_complexity Low_complexity 1 25 0 647 273 58 6 chr6 63935754 63935926 -118479316 + MIR SINE MIR 12 192 -70 893 163 39 28 chr6 63935926 63936104 -118479138 + AluJo SINE Alu 122 301 -11 1519 77 5 14 chr6 63936344 63936551 -118478691 - AluSg SINE Alu -105 205 1 22 0 0 0 chr6 63937302 63937324 -118477918 + AT_rich Low_complexity Low_complexity 1 22 0 255 184 204 20 chr6 63937372 63937470 -118477772 + MLT1K LTR MaLR 374 489 -99 368 154 0 109 chr6 63937628 63938032 -118477210 + (TATAA)n Simple_repeat Simple_repeat 1 359 0 244 174 0 109 chr6 63938052 63938661 -118476581 + (TATAA)n Simple_repeat Simple_repeat 1 542 0 31 92 0 0 chr6 63938676 63938763 -118476479 + AT_rich Low_complexity Low_complexity 1 87 0 291 158 0 114 chr6 63938782 63938984 -118476258 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 29 0 0 0 chr6 63938992 63939021 -118476221 + AT_rich Low_complexity Low_complexity 1 29 0 201 271 229 8 chr6 63939205 63939323 -118475919 + MIR SINE MIR 48 191 -71 183 244 0 0 chr6 63939957 63940002 -118475240 + MIR SINE MIR 218 262 0 2761 203 104 55 chr6 63941857 63942527 -118472715 + MER44D DNA MER2_type 1 575 -30 25 31 0 0 chr6 63942537 63942569 -118472673 + AT_rich Low_complexity Low_complexity 1 32 0 1242 239 132 55 chr6 63942728 63943197 -118472045 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr6 63943409 63943434 -118471808 + AT_rich Low_complexity Low_complexity 1 25 0 567 328 81 72 chr6 63944247 63944804 -118470438 - L2 LINE L2 0 3272 2701 201 159 29 72 chr6 63944956 63945025 -118470217 + T-rich Low_complexity Low_complexity 3 68 0 903 146 18 12 chr6 63945026 63945191 -118470051 - L1MB1 LINE L1 -1 6167 6002 437 271 37 0 chr6 63945211 63945318 -118469924 - L2 LINE L2 -593 2721 2611 701 329 42 0 chr6 63946591 63946828 -118468414 + MIR SINE MIR 5 251 -11 25 51 0 0 chr6 63947034 63947073 -118468169 + AT_rich Low_complexity Low_complexity 1 39 0 2065 164 23 3 chr6 63947778 63948132 -118467110 - MLT1A1 LTR MaLR -4 361 1 189 0 0 0 chr6 63949092 63949113 -118466129 + (TCTCCC)n Simple_repeat Simple_repeat 2 22 0 9027 94 12 59 chr6 63949114 63950519 -118464723 + SVA Other Other 48 1386 0 192 302 31 54 chr6 63950588 63950699 -118464543 - MIR SINE MIR -52 156 47 6033 94 27 0 chr6 63952624 63952964 -118462278 - L1PA13 LINE L1 -2 6161 5832 2162 110 7 3 chr6 63952964 63953264 -118461978 - AluSp SINE Alu -12 301 1 6033 94 27 0 chr6 63953264 63953912 -118461330 - L1PA13 LINE L1 -331 5832 5179 217 344 25 25 chr6 63954850 63954972 -118460270 + MIR SINE MIR 20 141 -67 468 363 5 21 chr6 63959881 63960071 -118455171 + MIR3 SINE MIR 17 203 -5 905 88 0 0 chr6 63960415 63960540 -118454702 - THE1A-int LTR MaLR -1453 127 3 246 94 0 0 chr6 63960542 63960574 -118454668 - THE1A LTR MaLR 0 355 324 4098 185 71 72 chr6 63961278 63963452 -118451790 - L1 LINE L1 -2724 4124 1957 2593 178 7 0 chr6 63963460 63963920 -118451322 - L1 LINE L1 -5090 1759 1297 21 0 0 0 chr6 63966689 63966710 -118448532 + AT_rich Low_complexity Low_complexity 1 21 0 248 294 19 62 chr6 63967038 63967198 -118448044 - HAL1b LINE L1 -445 903 751 357 273 140 49 chr6 63967770 63967913 -118447329 - HAL1 LINE L1 -592 1915 1760 254 271 128 23 chr6 63968242 63968375 -118446867 - HAL1 LINE L1 -2318 189 43 38 22 0 0 chr6 63968395 63968440 -118446802 + AT_rich Low_complexity Low_complexity 1 45 0 259 353 98 17 chr6 63968473 63968646 -118446596 - MIR SINE MIR -74 188 2 2181 139 0 0 chr6 63968712 63969022 -118446220 + AluSg SINE Alu 1 310 0 36 40 0 0 chr6 63969224 63969274 -118445968 + AT_rich Low_complexity Low_complexity 1 50 0 311 264 168 12 chr6 63969691 63969858 -118445384 - L2 LINE L2 -2 3311 3119 220 282 42 0 chr6 63969856 63969927 -118445315 + MIR SINE MIR 151 224 -38 * 15721 41 5 0 chr6 63970040 63972725 -118442517 + L1PA4 LINE L1 3463 6155 0 688 258 42 6 chr6 63973178 63973345 -118441897 - MER45A DNA AcHobo -5 173 1 699 234 74 47 chr6 63973658 63974188 -118441054 + LTR48B LTR ERV1 1 633 -11 384 332 32 27 chr6 63974217 63974404 -118440838 - MIR SINE MIR -72 190 3 203 358 0 12 chr6 63974487 63974568 -118440674 - L2 LINE L2 0 3272 3193 292 129 0 32 chr6 63974735 63974797 -118440445 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 593 248 14 71 chr6 63974836 63974929 -118440313 + MIR SINE MIR 65 162 -100 2845 159 10 90 chr6 63974929 63975531 -118439711 + MLT2B3 LTR ERVL 1 554 0 593 248 14 71 chr6 63975531 63975598 -118439644 + MIR SINE MIR 162 213 -49 1954 164 118 0 chr6 63975598 63975981 -118439261 - MSTA LTR MaLR 0 428 1 593 248 14 71 chr6 63975981 63976029 -118439213 + MIR SINE MIR 213 262 0 763 332 33 62 chr6 63977948 63978397 -118436845 + L3 LINE CR1 1139 1574 -3 277 240 40 0 chr6 63978641 63978716 -118436526 - L1MC4 LINE L1 -1339 6703 6626 309 309 56 28 chr6 63978801 63978979 -118436263 + MER5A DNA MER1_type 1 183 -6 770 310 109 54 chr6 63979427 63979665 -118435577 - MLT1K LTR MaLR 0 588 365 1457 166 212 33 chr6 63979665 63980056 -118435186 + LOR1b LTR ERV1 1 461 0 770 310 109 54 chr6 63980056 63980339 -118434903 - MLT1K LTR MaLR -223 365 38 343 345 96 0 chr6 63981435 63981612 -118433630 - MIR SINE MIR -41 221 28 321 317 84 12 chr6 63981684 63981851 -118433391 - MIR SINE MIR -79 183 5 21 57 0 0 chr6 63982667 63982702 -118432540 + AT_rich Low_complexity Low_complexity 1 35 0 1222 103 66 9 chr6 63982706 63982919 -118432323 + L1MB4 LINE L1 5956 6180 0 234 367 49 39 chr6 63983067 63983353 -118431889 + HAL1 LINE L1 755 1043 -1464 551 248 141 24 chr6 63983383 63983681 -118431561 + HAL1 LINE L1 1132 1464 -1043 1971 204 79 15 chr6 63983700 63984375 -118430867 + L1MB7 LINE L1 5280 6037 -147 5320 154 41 2 chr6 63984390 63985485 -118429757 - L1PA16 LINE L1 -9 6157 5023 * 43477 44 2 2 chr6 63985484 63991608 -118423634 - L1PA4 LINE L1 -26 6129 7 6097 203 15 32 chr6 63991611 63993122 -118422120 - L1 LINE L1 -1118 5028 3544 13019 50 5 0 chr6 66993175 66995500 -115419742 - L1PA4 LINE L1 -24 6131 3800 4146 54 4 0 chr6 66995675 66996195 -115419047 - L1PA4 LINE L1 -2355 3791 3270 2109 181 131 13 chr6 66996195 66997822 -115417420 - SATR1 Satellite Satellite -3 1819 1 2276 191 107 4 chr6 66997850 66998595 -115416647 - SATR1 Satellite Satellite -4 821 1 3982 47 0 0 chr6 66998617 66999382 -115415860 - L1P2 LINE L1 -508 5647 4883 2500 188 117 21 chr6 66999504 67002601 -115412641 + SATR1 Satellite Satellite 1 3393 0 2286 174 120 18 chr6 67002629 67006899 -115408343 - SATR1 Satellite Satellite -1 4701 1 3337 58 2 14 chr6 67007000 67007417 -115407825 + L1PA4 LINE L1 5744 6155 0 2469 207 94 22 chr6 67007428 67009875 -115405367 + SATR1 Satellite Satellite 1 2622 0 2333 181 99 20 chr6 67009903 67011457 -115403785 + SATR1 Satellite Satellite 1 1678 -415 2176 193 77 48 chr6 67011569 67012680 -115402562 - SATR1 Satellite Satellite 0 1143 1 1829 215 100 21 chr6 67012707 67013859 -115401383 - SATR1 Satellite Satellite -6 1243 1 1249 145 15 0 chr6 67013861 67014061 -115401181 + AluSq SINE Alu 17 219 -94 1843 169 23 17 chr6 67014175 67014525 -115400717 + MER89 LTR ERV1 208 559 0 682 172 62 21 chr6 67014580 67014725 -115400517 - L1MB8 LINE L1 0 6178 6028 337 329 48 55 chr6 67014736 67015134 -115400108 + L1PA13 LINE L1 1003 1397 -6177 278 375 0 0 chr6 67015249 67015345 -115399897 + L1PA13 LINE L1 2087 2182 -5399 11681 258 29 45 chr6 67015587 67019924 -115395318 + L1PA13 LINE L1 2182 6465 -1119 37009 54 4 30 chr6 67019928 67024754 -115390488 + L1P LINE L1 7 4707 -1439 27477 68 2 2 chr6 67024864 67028390 -115386852 - L1P LINE L1 -2622 3524 1 2536 181 108 11 chr6 67028729 67034235 -115381007 - SATR1 Satellite Satellite -144 6039 1 2332 177 101 28 chr6 67034253 67037104 -115378138 + SATR1 Satellite Satellite 1 3058 -142 1318 157 70 82 chr6 67038098 67038429 -115376813 - LTR47A LTR ERVL -3 449 123 5543 141 67 18 chr6 67038447 67039482 -115375760 - L1PA16 LINE L1 -6 6160 5104 6259 237 35 57 chr6 67039860 67040861 -115374381 - L1P3 LINE L1 -3692 2769 1748 1947 146 10 7 chr6 67040861 67041163 -115374079 - AluSx SINE Alu -9 303 1 6259 237 35 57 chr6 67041163 67042956 -115372286 - L1P3 LINE L1 -4713 1748 2 2436 141 24 24 chr6 67043344 67043770 -115371472 - L1M2 LINE L1 -530 5782 5357 937 256 4 4 chr6 67043774 67043973 -115371269 + L1 LINE L1 5098 5299 -847 207 0 0 0 chr6 67043973 67043996 -115371246 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 937 256 4 4 chr6 67043996 67044058 -115371184 + L1 LINE L1 5298 5359 -787 310 217 14 0 chr6 67044058 67044127 -115371115 + MER67D LTR ERV1 442 511 -3 718 315 124 22 chr6 67044132 67044526 -115370716 + L2 LINE L2 2625 3088 -225 2656 165 88 6 chr6 67044526 67044993 -115370249 + MLT1D LTR MaLR 1 505 0 718 315 124 22 chr6 67044993 67045163 -115370079 + L2 LINE L2 3088 3239 -74 261 323 30 60 chr6 67045420 67045553 -115369689 + MLT1I LTR MaLR 112 240 -169 967 225 11 0 chr6 67046176 67046363 -115368879 - MER58A DNA MER1_type 0 224 36 1797 198 25 14 chr6 67046473 67046511 -115368731 - MLT2C1 LTR ERVL -7 407 371 252 0 0 0 chr6 67046511 67046539 -115368703 + (CA)n Simple_repeat Simple_repeat 2 29 0 3180 201 26 9 chr6 67046540 67047181 -115368061 + MER82 DNA MER2_type 1 652 -1 1797 198 25 14 chr6 67047181 67047545 -115367697 - MLT2C1 LTR ERVL -42 372 1 230 172 23 81 chr6 67047579 67047666 -115367576 + L1MC5 LINE L1 7665 7746 -215 1271 246 180 42 chr6 67047823 67048344 -115366898 - MLT1E LTR MaLR 0 593 1 29 0 0 0 chr6 67048516 67048545 -115366697 + AT_rich Low_complexity Low_complexity 1 29 0 414 363 65 19 chr6 67048751 67049060 -115366182 - L1MDb LINE L1 -5173 1236 914 225 167 0 37 chr6 67049800 67049854 -115365388 + (TTTAA)n Simple_repeat Simple_repeat 5 56 0 25 0 0 0 chr6 67049870 67049895 -115365347 + AT_rich Low_complexity Low_complexity 1 25 0 352 326 81 26 chr6 67049916 67050226 -115365016 - L1MEc LINE L1 -847 1729 1389 340 354 128 7 chr6 67050385 67050673 -115364569 - L1M2 LINE L1 -4631 2218 1896 629 293 124 9 chr6 67050720 67050945 -115364297 + MIR SINE MIR 10 260 -2 430 333 133 14 chr6 67050954 67051459 -115363783 - L1MEc LINE L1 -5251 954 390 980 189 0 14 chr6 67052360 67052596 -115362646 - L1M2 LINE L1 -744 5402 5235 2245 178 28 5 chr6 67052596 67053018 -115362224 + MSTB1 LTR MaLR 1 432 0 6614 208 98 17 chr6 67053020 67054547 -115360695 + MSTB1-int LTR MaLR 2 1651 0 2018 183 14 6 chr6 67054551 67054901 -115360341 + MSTB1 LTR MaLR 5 357 -75 12930 42 1 0 chr6 67055439 67057794 -115357448 - L1PA3 LINE L1 -3 6152 3795 229 393 21 14 chr6 67058123 67058263 -115356979 - HAL1 LINE L1 -1612 895 755 1184 136 56 0 chr6 67058411 67058624 -115356618 - L1MB4 LINE L1 0 6180 5956 384 77 0 0 chr6 67058642 67058694 -115356548 + (TA)n Simple_repeat Simple_repeat 1 52 0 391 292 148 14 chr6 67059511 67059727 -115355515 + MIR SINE MIR 5 249 -13 315 350 96 0 chr6 67059750 67059927 -115355315 + MIR SINE MIR 28 221 -41 753 308 109 54 chr6 67060916 67061199 -115354043 + MLT1K LTR MaLR 38 304 -284 1406 170 216 28 chr6 67061199 67061587 -115353655 - LOR1b LTR ERV1 0 461 1 753 308 109 54 chr6 67061587 67061825 -115353417 + MLT1K LTR MaLR 304 588 0 255 309 43 35 chr6 67062273 67062419 -115352823 - MER5A DNA MER1_type -6 183 26 234 150 0 0 chr6 67062558 67062598 -115352644 + (TG)n Simple_repeat Simple_repeat 2 41 0 433 324 66 19 chr6 67062988 67063201 -115352041 - L3 LINE CR1 -216 1361 1139 622 248 20 55 chr6 67065127 67065172 -115350070 - MIR SINE MIR -3 259 214 2009 157 118 0 chr6 67065172 67065555 -115349687 + MSTA LTR MaLR 1 428 0 622 248 20 55 chr6 67065555 67065622 -115349620 - MIR SINE MIR -48 214 146 2832 161 10 90 chr6 67065622 67066224 -115349018 - MLT2B3 LTR ERVL 0 554 1 622 248 20 55 chr6 67066224 67066312 -115348930 - MIR SINE MIR -116 146 65 217 177 0 32 chr6 67066351 67066413 -115348829 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 22 0 0 0 chr6 67066517 67066539 -115348703 + AT_rich Low_complexity Low_complexity 1 22 0 215 346 0 12 chr6 67066593 67066674 -115348568 + L2 LINE L2 3193 3272 0 319 353 32 27 chr6 67066757 67066944 -115348298 + MIR SINE MIR 3 190 -72 618 236 86 47 chr6 67066974 67067504 -115347738 - LTR48B LTR ERV1 -13 739 1 714 251 42 6 chr6 67067819 67067986 -115347256 + MER45A DNA AcHobo 1 173 -5 15623 38 5 1 chr6 67068439 67071120 -115344122 - L1PA4 LINE L1 -4 6151 3463 238 268 42 0 chr6 67071233 67071304 -115343938 - MIR SINE MIR -38 224 151 * 275 252 89 16 chr6 67071302 67071425 -115343817 + L2 LINE L2 3119 3250 -63 47 19 0 0 chr6 67071884 67071938 -115343304 + AT_rich Low_complexity Low_complexity 1 54 0 2090 147 7 0 chr6 67072139 67072446 -115342796 - AluSg SINE Alu -1 309 1 263 353 98 17 chr6 67072512 67072685 -115342557 + MIR SINE MIR 2 188 -74 38 22 0 0 chr6 67072718 67072763 -115342479 + AT_rich Low_complexity Low_complexity 1 45 0 298 258 253 21 chr6 67073194 67073388 -115341854 + HAL1 LINE L1 1677 1915 -592 183 42 0 0 chr6 67073637 67073661 -115341581 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 29169 42 1 0 chr6 67074075 67077701 -115337541 - L1P LINE L1 -852 5294 1667 476 253 33 13 chr6 67078798 67078948 -115336294 - LTR33 LTR ERVL -2 519 367 408 293 49 68 chr6 67079040 67079174 -115336068 - LTR33 LTR ERVL -319 202 72 766 268 0 22 chr6 67079174 67079353 -115335889 - MER45A DNA AcHobo 0 178 4 408 293 49 68 chr6 67079353 67079423 -115335819 - LTR33 LTR ERVL -449 72 2 517 292 65 0 chr6 67079426 67079594 -115335648 + MIR SINE MIR 82 260 -2 239 336 156 8 chr6 67080077 67080199 -115335043 + MIR SINE MIR 8 147 -115 2626 191 107 20 chr6 67080847 67082334 -115332908 - SATR1 Satellite Satellite -2 4757 3401 2041 133 0 0 chr6 67082334 67082628 -115332614 + AluSg SINE Alu 1 294 -16 2626 191 107 20 chr6 67082628 67085223 -115330019 - SATR1 Satellite Satellite -1358 3401 1 2613 171 7 0 chr6 67085242 67085676 -115329566 - L1PA12 LINE L1 -5451 2130 1694 837 148 7 0 chr6 67086279 67086414 -115328828 - L1M2 LINE L1 -6704 145 10 3138 159 11 60 chr6 67086457 67087078 -115328164 - MER6A DNA MER2_type -14 591 1 34 55 0 0 chr6 67087319 67087374 -115327868 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr6 67089646 67089671 -115325571 + AT_rich Low_complexity Low_complexity 1 25 0 647 273 58 6 chr6 67089681 67089853 -115325389 + MIR SINE MIR 12 192 -70 859 172 12 30 chr6 67089861 67090030 -115325212 + FRAM SINE Alu 1 165 -11 2318 107 0 0 chr6 67090176 67090486 -115324756 - AluSg SINE Alu 0 310 1 22 0 0 0 chr6 67091237 67091259 -115323983 + AT_rich Low_complexity Low_complexity 1 22 0 255 184 204 20 chr6 67091307 67091405 -115323837 + MLT1K LTR MaLR 374 489 -99 215 232 66 0 chr6 67091528 67091679 -115323563 + (TA)n Simple_repeat Simple_repeat 1 161 0 * 368 154 0 109 chr6 67091630 67092034 -115323208 + (TATAA)n Simple_repeat Simple_repeat 1 359 0 244 174 0 109 chr6 67092054 67092459 -115322783 + (TATAA)n Simple_repeat Simple_repeat 1 360 0 37 99 0 0 chr6 67092474 67092595 -115322647 + AT_rich Low_complexity Low_complexity 1 121 0 355 142 2 120 chr6 67092614 67093017 -115322225 + (TATAA)n Simple_repeat Simple_repeat 1 355 0 29 0 0 0 chr6 67093020 67093049 -115322193 + AT_rich Low_complexity Low_complexity 1 29 0 201 271 229 8 chr6 67093233 67093351 -115321891 + MIR SINE MIR 48 191 -71 183 244 0 0 chr6 67093985 67094030 -115321212 + MIR SINE MIR 218 262 0 2761 203 104 55 chr6 67095885 67096555 -115318687 + MER44D DNA MER2_type 1 575 -30 25 31 0 0 chr6 67096565 67096597 -115318645 + AT_rich Low_complexity Low_complexity 1 32 0 1242 239 132 55 chr6 67096756 67097225 -115318017 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr6 67097437 67097462 -115317780 + AT_rich Low_complexity Low_complexity 1 25 0 567 328 81 72 chr6 67098275 67098832 -115316410 - L2 LINE L2 0 3272 2701 201 159 29 72 chr6 67098984 67099053 -115316189 + T-rich Low_complexity Low_complexity 3 68 0 903 146 18 12 chr6 67099054 67099219 -115316023 - L1MB1 LINE L1 -1 6167 6002 437 271 37 0 chr6 67099239 67099346 -115315896 - L2 LINE L2 -593 2721 2611 701 329 42 0 chr6 67100619 67100856 -115314386 + MIR SINE MIR 5 251 -11 25 51 0 0 chr6 67101062 67101101 -115314141 + AT_rich Low_complexity Low_complexity 1 39 0 2065 164 23 3 chr6 67101806 67102160 -115313082 - MLT1A1 LTR MaLR -4 361 1 189 0 0 0 chr6 67103120 67103141 -115312101 + (TCTCCC)n Simple_repeat Simple_repeat 2 22 0 8979 95 12 60 chr6 67103142 67104548 -115310694 + SVA Other Other 48 1386 0 192 302 31 54 chr6 67104617 67104728 -115310514 - MIR SINE MIR -52 156 47 6033 94 27 0 chr6 67106692 67107032 -115308210 - L1PA13 LINE L1 -2 6161 5832 2162 110 7 3 chr6 67107032 67107332 -115307910 - AluSp SINE Alu -12 301 1 6033 94 27 0 chr6 67107332 67107980 -115307262 - L1PA13 LINE L1 -331 5832 5179 217 344 25 25 chr6 67108918 67109040 -115306202 + MIR SINE MIR 20 141 -67 388 380 0 23 chr6 67114250 67114421 -115300821 + MIR3 SINE MIR 17 183 -25 3928 241 44 41 chr6 67114523 67114832 -115300410 - L1 LINE L1 -3335 4230 3924 2339 101 3 0 chr6 67114832 67115140 -115300102 - AluY SINE Alu -2 309 1 3928 241 44 41 chr6 67115140 67117003 -115298239 - L1 LINE L1 -3641 3924 2039 3192 185 24 6 chr6 67117000 67117212 -115298030 + L1 LINE L1 4528 4735 -1411 * 2362 152 30 28 chr6 67117212 67117645 -115297597 - Tigger2a DNA MER2_type 0 434 1 3192 185 24 6 chr6 67117645 67118098 -115297144 + L1 LINE L1 4735 5205 -941 1326 174 14 7 chr6 67118289 67118570 -115296672 + Charlie1 DNA MER1_type 2346 2628 -133 45 0 0 0 chr6 67118582 67118627 -115296615 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr6 67118719 67118742 -115296500 + AT_rich Low_complexity Low_complexity 1 23 0 748 163 0 0 chr6 67118742 67118865 -115296377 + Charlie1 DNA MER1_type 2639 2761 0 3137 200 19 36 chr6 67118920 67119265 -115295977 - L1M4 LINE L1 -963 5183 4834 1711 158 7 4 chr6 67119265 67119544 -115295698 + AluSx SINE Alu 21 300 -12 3137 200 19 36 chr6 67119544 67119953 -115295289 - L1M4 LINE L1 -1312 4834 4442 1678 198 91 13 chr6 67121453 67121848 -115293394 + MSTC LTR MaLR 3 428 0 2370 176 95 39 chr6 67122640 67123268 -115291974 - SATR1 Satellite Satellite 0 2768 2177 1837 157 0 4 chr6 67123268 67123549 -115291693 + AluSx SINE Alu 15 294 -18 2370 176 95 39 chr6 67123549 67125261 -115289981 - SATR1 Satellite Satellite -591 2177 1 488 353 11 21 chr6 67127322 67127509 -115287733 + MIR3 SINE MIR 19 203 -5 923 72 0 0 chr6 67127852 67127977 -115287265 - THE1A-int LTR MaLR -1453 127 3 246 94 0 0 chr6 67127979 67128011 -115287231 - THE1A LTR MaLR 0 355 324 1548 202 36 24 chr6 67128723 67129219 -115286023 - L1 LINE L1 -2724 3422 2921 4098 186 71 72 chr6 67129381 67131539 -115283703 - L1 LINE L1 -2741 4107 1957 2593 178 7 0 chr6 67131547 67132007 -115283235 - L1 LINE L1 -5090 1759 1297 21 0 0 0 chr6 67134776 67134797 -115280445 + AT_rich Low_complexity Low_complexity 1 21 0 248 294 19 62 chr6 67135125 67135285 -115279957 - HAL1b LINE L1 -445 903 751 357 273 140 49 chr6 67135857 67136000 -115279242 - HAL1 LINE L1 -592 1915 1760 254 271 128 23 chr6 67136329 67136462 -115278780 - HAL1 LINE L1 -2318 189 43 38 22 0 0 chr6 67136482 67136527 -115278715 + AT_rich Low_complexity Low_complexity 1 45 0 259 353 98 17 chr6 67136560 67136733 -115278509 - MIR SINE MIR -74 188 2 2181 139 0 0 chr6 67136799 67137109 -115278133 + AluSg SINE Alu 1 310 0 36 40 0 0 chr6 67137311 67137361 -115277881 + AT_rich Low_complexity Low_complexity 1 50 0 311 264 168 12 chr6 67137778 67137945 -115277297 - L2 LINE L2 -2 3311 3119 220 282 42 0 chr6 67137943 67138014 -115277228 + MIR SINE MIR 151 224 -38 * 15721 41 5 0 chr6 67138127 67140812 -115274430 + L1PA4 LINE L1 3463 6155 0 688 258 42 6 chr6 67141265 67141432 -115273810 - MER45A DNA AcHobo -5 173 1 699 234 74 47 chr6 67141745 67142275 -115272967 + LTR48B LTR ERV1 1 633 -11 384 332 32 27 chr6 67142304 67142491 -115272751 - MIR SINE MIR -72 190 3 206 357 0 12 chr6 67142574 67142658 -115272584 - L2 LINE L2 0 3272 3190 905 88 0 0 chr6 67143152 67143277 -115271965 - THE1A-int LTR MaLR -1453 127 3 246 94 0 0 chr6 67143279 67143311 -115271931 - THE1A LTR MaLR 0 355 324 306 167 14 14 chr6 67144015 67144087 -115271155 - L1 LINE L1 -2724 3422 3351 292 129 0 32 chr6 67144323 67144385 -115270857 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 593 248 14 71 chr6 67144424 67144517 -115270725 + MIR SINE MIR 65 162 -100 2845 159 10 90 chr6 67144517 67145119 -115270123 + MLT2B3 LTR ERVL 1 554 0 593 248 14 71 chr6 67145119 67145186 -115270056 + MIR SINE MIR 162 213 -49 1954 164 118 0 chr6 67145186 67145569 -115269673 - MSTA LTR MaLR 0 428 1 593 248 14 71 chr6 67145569 67145617 -115269625 + MIR SINE MIR 213 262 0 746 332 33 62 chr6 67147327 67147776 -115267466 + L3 LINE CR1 1139 1574 -3 259 233 41 0 chr6 67148020 67148093 -115267149 - L1MC4 LINE L1 -1339 6703 6628 303 309 56 28 chr6 67148180 67148358 -115266884 + MER5A DNA MER1_type 1 183 -6 610 309 110 54 chr6 67148806 67149044 -115266198 - MLT1K LTR MaLR 0 588 365 1442 166 212 33 chr6 67149044 67149435 -115265807 + LOR1b LTR ERV1 1 461 0 610 309 110 54 chr6 67149435 67149714 -115265528 - MLT1K LTR MaLR -223 365 42 343 345 96 0 chr6 67150712 67150889 -115264353 - MIR SINE MIR -41 221 28 312 317 84 12 chr6 67150961 67151128 -115264114 - MIR SINE MIR -79 183 5 21 57 0 0 chr6 67151944 67151979 -115263263 + AT_rich Low_complexity Low_complexity 1 35 0 1213 103 66 9 chr6 67151983 67152196 -115263046 + L1MB4 LINE L1 5956 6180 0 446 378 42 31 chr6 67152344 67152630 -115262612 + HAL1 LINE L1 755 1043 -1464 476 248 141 24 chr6 67152660 67152958 -115262284 + HAL1 LINE L1 1132 1464 -1043 1847 205 79 15 chr6 67152977 67153652 -115261590 + L1MB7 LINE L1 5280 6037 -147 5030 154 41 2 chr6 67153667 67154762 -115260480 - L1PA16 LINE L1 -9 7595 6461 * 41521 44 2 2 chr6 67154761 67160885 -115254357 - L1PA4 LINE L1 -26 6129 7 10774 234 19 34 chr6 67160889 67165208 -115250034 - L1PA16 LINE L1 -1119 6465 2182 267 370 0 0 chr6 67165450 67165550 -115249692 - L1PA16 LINE L1 -5399 2182 2083 270 332 52 35 chr6 67165696 67166063 -115249179 - L1PA16 LINE L1 -6203 1371 999 606 178 55 20 chr6 67166071 67166217 -115249025 + L1MB8 LINE L1 6028 6178 0 2232 193 19 73 chr6 67166273 67166864 -115248378 - MER89 LTR ERV1 0 559 1 2256 172 116 3 chr6 67168052 67170047 -115245195 + SATR1 Satellite Satellite 1 2219 0 2346 169 106 2 chr6 67170079 67171703 -115243539 + SATR1 Satellite Satellite 1 1794 0 2259 157 115 1 chr6 67171738 67172442 -115242800 + SATR1 Satellite Satellite 1 784 0 2219 178 105 17 chr6 67172471 67173980 -115241262 - SATR1 Satellite Satellite -156 1642 1 2247 186 99 34 chr6 67173993 67176018 -115239224 + SATR1 Satellite Satellite 1 1892 -2331 1888 146 14 3 chr6 67176018 67176305 -115238937 - AluSx SINE Alu -18 294 5 2247 186 99 34 chr6 67176305 67177956 -115237286 + SATR1 Satellite Satellite 1892 4223 0 1665 210 105 25 chr6 67177988 67178713 -115236529 + SATR1 Satellite Satellite 1 783 -7 2020 192 123 17 chr6 67178736 67180753 -115234489 + SATR1 Satellite Satellite 1 2231 -1 2265 167 122 25 chr6 67180785 67181774 -115233468 + SATR1 Satellite Satellite 1 1085 0 2227 174 106 8 chr6 67181801 67183845 -115231397 + SATR1 Satellite Satellite 1 2243 0 2213 189 106 7 chr6 67183869 67186511 -115228731 - SATR1 Satellite Satellite 0 5099 2719 10453 55 4 84 chr6 67186511 67188016 -115227226 + SVA Other Other 1 1385 -1 2213 189 106 7 chr6 67188016 67188510 -115226732 - SATR1 Satellite Satellite -2380 2719 1 2335 177 100 16 chr6 67188546 67193249 -115221993 - SATR1 Satellite Satellite -1 5095 1 2268 190 108 6 chr6 67193261 67194831 -115220411 - SATR1 Satellite Satellite 0 1730 1 4408 168 59 31 chr6 67194832 67195899 -115219343 - LTR49-int LTR ERV1 -785 5546 4450 4180 24 2 0 chr6 67195899 67196497 -115218745 + L1P1 LINE L1 5169 5767 -388 494 193 0 18 chr6 67196586 67196700 -115218542 - LTR49-int LTR ERV1 -4930 1401 1290 749 222 74 59 chr6 67196745 67197031 -115218211 - LTR49-int LTR ERV1 -5042 1289 999 1793 189 72 61 chr6 67197373 67197917 -115217325 - LTR49 LTR ERV1 -45 550 1 251 309 49 12 chr6 67198021 67198102 -115217140 + MIR SINE MIR 16 99 -109 21 57 0 0 chr6 67198912 67198947 -115216295 + AT_rich Low_complexity Low_complexity 1 35 0 702 276 128 50 chr6 67199311 67200639 -115214603 - HAL1 LINE L1 -335 2172 619 239 248 78 47 chr6 67201018 67201147 -115214095 - HAL1 LINE L1 -2340 167 35 21 0 0 0 chr6 67201964 67201985 -115213257 + AT_rich Low_complexity Low_complexity 1 21 0 283 291 13 25 chr6 67204424 67204503 -115210739 + MER5B DNA MER1_type 3 80 -98 21986 42 14 0 chr6 67205339 67208852 -115206390 + L1PA4 LINE L1 2629 6149 -6 6504 47 2 1 chr6 67208860 67209663 -115205579 + L1PA4 LINE L1 5352 6155 0 1331 289 30 37 chr6 67209987 67210451 -115204791 - LTR16B LTR ERVL 0 464 4 1971 236 53 5 chr6 67210547 67211126 -115204116 + L1 LINE L1 2485 3094 -3052 2219 153 5 16 chr6 67211126 67211505 -115203737 + THE1C LTR MaLR 1 375 0 5548 165 73 41 chr6 67211505 67212776 -115202466 + THE1C-int LTR MaLR 1 1312 -268 2915 108 44 19 chr6 67212776 67213250 -115201992 - LTR21A LTR ERV1 -19 486 1 1661 120 3 68 chr6 67213250 67213542 -115201700 + THE1C-int LTR MaLR 1308 1580 0 2359 141 5 11 chr6 67213542 67213919 -115201323 + THE1C LTR MaLR 1 375 0 4872 231 42 9 chr6 67213926 67215274 -115199968 + L1 LINE L1 3102 4494 -1652 336 48 0 0 chr6 67216177 67216219 -115199023 + (CAT)n Simple_repeat Simple_repeat 1 42 0 187 344 0 16 chr6 67217436 67217497 -115197745 + L2 LINE L2 3210 3269 -3 2679 282 112 17 chr6 67217720 67218993 -115196249 - L2 LINE L2 -5 3308 1911 3412 134 35 0 chr6 67219034 67219543 -115195699 - MER1A DNA MER1_type 0 527 1 492 224 0 0 chr6 67220539 67220637 -115194605 + FLAM_A SINE Alu 25 122 -20 425 293 153 0 chr6 67220818 67220975 -115194267 - MER5A DNA MER1_type 0 189 9 2133 135 125 10 chr6 67221812 67222196 -115193046 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr6 67223422 67223451 -115191791 + AT_rich Low_complexity Low_complexity 1 29 0 249 239 28 109 chr6 67223481 67223788 -115191454 + L1MC4 LINE L1 6903 7140 -821 1645 135 104 32 chr6 67223788 67224135 -115191107 + THE1C LTR MaLR 4 375 0 249 239 28 109 chr6 67224135 67224211 -115191031 + L1MC4 LINE L1 7140 7221 -740 * 271 333 74 15 chr6 67224208 67224343 -115190899 + L1MC4a LINE L1 7244 7386 -422 568 252 50 61 chr6 67224380 67224584 -115190658 + L1MC5 LINE L1 7311 7513 -448 321 320 16 0 chr6 67224584 67224709 -115190533 - MER94 DNA DNA -3 131 5 568 252 50 61 chr6 67224709 67224766 -115190476 + L1MC5 LINE L1 7513 7569 -392 251 277 61 27 chr6 67224975 67225123 -115190119 + L1MC5 LINE L1 7758 7910 -51 3079 248 72 62 chr6 67225203 67225998 -115189244 + L1M4 LINE L1 2431 3216 -2930 198 0 0 0 chr6 67225998 67226020 -115189222 + (TTA)n Simple_repeat Simple_repeat 3 24 0 765 34 0 0 chr6 67226020 67226108 -115189134 - L1PA3 LINE L1 -18 6137 6050 3079 248 72 62 chr6 67226108 67226848 -115188394 + L1M4 LINE L1 3215 3983 -2163 1065 241 56 61 chr6 67226848 67227242 -115188000 - MLT1C LTR MaLR -2 465 74 1776 213 14 7 chr6 67227257 67227674 -115187568 + L1M4 LINE L1 3977 4396 -1750 839 229 72 57 chr6 67227711 67228060 -115187182 + L1MC4 LINE L1 7688 8041 -1 289 321 151 0 chr6 67228065 67228171 -115187071 - L2 LINE L2 -1479 1835 1714 22 35 0 0 chr6 67230095 67230124 -115185118 + AT_rich Low_complexity Low_complexity 1 29 0 22 88 0 0 chr6 67230325 67230382 -115184860 + AT_rich Low_complexity Low_complexity 1 57 0 242 319 90 35 chr6 67231641 67231785 -115183457 - L2 LINE L2 -194 3078 2927 2441 59 0 47 chr6 67231809 67232129 -115183113 + AluY SINE Alu 1 305 -6 285 325 79 61 chr6 67232222 67232450 -115182792 - L2 LINE L2 -589 2725 2494 1612 125 8 0 chr6 67233105 67233361 -115181881 - MSTA-int LTR MaLR -1393 258 1 2112 142 129 5 chr6 67233361 67233742 -115181500 - MSTA LTR MaLR 0 428 1 540 324 30 15 chr6 67233753 67234058 -115181184 - MLT1J2 LTR MaLR -83 367 24 9078 143 79 21 chr6 67234060 67235659 -115179583 - Tigger2 DNA MER2_type 0 2718 1027 640 177 128 29 chr6 67235656 67235899 -115179343 + Charlie5 DNA MER1_type 2351 2617 0 * 22 80 0 0 chr6 67236022 67236072 -115179170 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr6 67236421 67236445 -115178797 + AT_rich Low_complexity Low_complexity 1 24 0 14514 91 4 2 chr6 67236463 67238432 -115176810 + L1P LINE L1 14 1986 -4160 22 0 0 0 chr6 67238714 67238736 -115176506 + AT_rich Low_complexity Low_complexity 1 22 0 254 308 45 35 chr6 67239088 67239286 -115175956 - L1M4 LINE L1 -1449 4697 4498 26 50 0 0 chr6 67239766 67239806 -115175436 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr6 67240447 67240473 -115174769 + AT_rich Low_complexity Low_complexity 1 26 0 195 129 0 0 chr6 67240742 67240773 -115174469 + (T)n Simple_repeat Simple_repeat 1 31 0 895 267 77 47 chr6 67240876 67241333 -115173909 + MER77 LTR ERV1 215 668 -8 183 269 19 19 chr6 67241434 67241486 -115173756 - L2 LINE L2 0 3313 3262 2016 25 16 4 chr6 67242183 67242426 -115172816 - L1PA3 LINE L1 -2 6153 5908 449 92 0 0 chr6 67243184 67243249 -115171993 + L1PA3 LINE L1 6088 6152 -3 593 332 54 21 chr6 67243835 67244076 -115171166 - MIR SINE MIR -8 254 6 272 172 0 0 chr6 67244259 67244317 -115170925 + (TA)n Simple_repeat Simple_repeat 2 59 0 854 90 0 0 chr6 67244319 67244430 -115170812 - AluSg/x SINE Alu -22 288 178 203 385 13 0 chr6 67245320 67245398 -115169844 - L2 LINE L2 -41 3272 3194 21 36 0 0 chr6 67246283 67246311 -115168931 + AT_rich Low_complexity Low_complexity 1 28 0 283 353 35 24 chr6 67249622 67249808 -115165434 + MIR SINE MIR 18 206 -56 188 286 0 0 chr6 67250039 67250088 -115165154 - L2 LINE L2 -2 3270 3222 260 397 72 13 chr6 67250563 67250800 -115164442 + MIR SINE MIR 3 253 -9 2473 118 53 67 chr6 67250893 67251327 -115163915 - MSTA LTR MaLR 0 428 1 284 311 89 11 chr6 67251426 67251516 -115163726 - MIR SINE MIR -154 108 12 204 262 66 42 chr6 67252180 67252276 -115162966 + MIR SINE MIR 69 174 -66 682 249 117 84 chr6 67253595 67254060 -115161182 - MLT1H LTR MaLR -34 515 1 442 325 83 27 chr6 67254875 67255484 -115159758 + L1ME3 LINE L1 5280 5837 -325 22 0 0 0 chr6 67255769 67255791 -115159451 + AT_rich Low_complexity Low_complexity 1 22 0 233 231 0 0 chr6 67256135 67256187 -115159055 - L1MC/D LINE L1 -1922 5886 5835 29676 121 18 54 chr6 67256757 67263150 -115152092 - L1PA7 LINE L1 0 6154 2 1999 115 23 39 chr6 67263164 67263469 -115151773 - AluSx SINE Alu -12 300 1 2828 78 5 3 chr6 67264043 67264427 -115150815 - L1PA6 LINE L1 0 6154 5770 318 50 0 0 chr6 67264429 67264469 -115150773 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 7419 29 0 0 chr6 67264469 67266039 -115149203 - L1PA3 LINE L1 -10 6145 4573 15689 33 4 1 chr6 67266039 67267964 -115147278 + L1PA3 LINE L1 2643 4573 -1573 340 219 123 2 chr6 67268364 67268518 -115146724 - MER20 DNA MER1_type -15 204 1 405 256 62 102 chr6 67268901 67269175 -115146067 - MLT1J LTR MaLR -140 371 109 323 326 69 17 chr6 67269354 67269529 -115145713 - MIR SINE MIR -7 255 72 190 286 61 82 chr6 67270357 67270445 -115144797 + L3 LINE CR1 889 974 -603 4341 226 16 29 chr6 67270445 67271499 -115143743 - MER45B DNA AcHobo 0 1040 1 190 286 61 82 chr6 67271499 67271557 -115143685 + L3 LINE CR1 974 1032 -545 22 0 0 0 chr6 67271591 67271613 -115143629 + AT_rich Low_complexity Low_complexity 1 22 0 1634 90 0 5 chr6 67272449 67272660 -115142582 + AluSc SINE Alu 79 288 -21 237 200 0 31 chr6 67273107 67273172 -115142070 - MLT2C1 LTR ERVL -2 395 333 285 157 24 36 chr6 67273173 67273256 -115141986 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 2103 207 7 12 chr6 67273269 67273680 -115141562 - MLT2C2 LTR ERVL -55 409 1 215 287 85 21 chr6 67273876 67273970 -115141272 - L2 LINE L2 -946 2368 2269 26 0 0 49 chr6 67275191 67275215 -115140027 + AT_rich Low_complexity Low_complexity 1 24 -15 968 169 16 0 chr6 67275215 67275404 -115139838 - L1MA5A LINE L1 -5 6292 6101 26 0 0 49 chr6 67275404 67275420 -115139822 + AT_rich Low_complexity Low_complexity 24 39 0 183 205 0 0 chr6 67275614 67275653 -115139589 + (CA)n Simple_repeat Simple_repeat 2 40 0 201 387 21 0 chr6 67275839 67275932 -115139310 + L2 LINE L2 3214 3308 -5 28 29 0 0 chr6 67276249 67276284 -115138958 + AT_rich Low_complexity Low_complexity 1 35 0 1445 251 77 2 chr6 67276696 67277099 -115138143 + HsTC2 DNA Tc2 81 513 -1385 1153 216 82 38 chr6 67277071 67277521 -115137721 + HsTC2 DNA Tc2 1243 1888 -10 * 243 88 0 0 chr6 67278747 67278781 -115136461 + (CA)n Simple_repeat Simple_repeat 2 35 0 1599 190 0 14 chr6 67278789 67279078 -115136164 - AluJb SINE Alu -27 285 1 222 346 173 0 chr6 67280587 67280691 -115134551 + L2 LINE L2 1714 1835 -1479 787 244 69 52 chr6 67280696 67281044 -115134198 - L1MC4 LINE L1 -1 8041 7688 1766 212 12 7 chr6 67281093 67281498 -115133744 - L1M4 LINE L1 -1763 4383 3977 968 246 55 67 chr6 67281507 67281910 -115133332 + MLT1C LTR MaLR 68 465 -2 2992 249 74 63 chr6 67281910 67282649 -115132593 - L1M4 LINE L1 -2163 3983 3254 759 34 0 0 chr6 67282649 67282770 -115132472 + L1PA3 LINE L1 6050 6170 0 2992 249 74 63 chr6 67282770 67283565 -115131677 - L1M4 LINE L1 -2892 3254 2431 237 284 61 27 chr6 67283645 67283793 -115131449 - L1MC5 LINE L1 -51 7910 7758 590 255 50 46 chr6 67284001 67284054 -115131188 - L1MC5 LINE L1 -392 7569 7518 307 333 16 0 chr6 67284054 67284183 -115131059 + MER94 DNA DNA 1 131 -3 590 255 50 46 chr6 67284183 67284388 -115130854 - L1MC5 LINE L1 -443 7518 7310 260 267 48 75 chr6 67284424 67284632 -115130610 - L1MC4 LINE L1 -576 7466 7254 1711 147 72 31 chr6 67284632 67284992 -115130250 - THE1C LTR MaLR 0 375 1 260 267 48 75 chr6 67284992 67285196 -115130046 - L1MC4 LINE L1 -788 7254 6983 22 35 0 0 chr6 67285338 67285367 -115129875 + AT_rich Low_complexity Low_complexity 1 29 0 2068 143 125 10 chr6 67286592 67286976 -115128266 + MSTA LTR MaLR 1 428 0 431 293 153 0 chr6 67287814 67287971 -115127271 + MER5A DNA MER1_type 9 189 0 492 224 0 0 chr6 67288152 67288250 -115126992 - FLAM_A SINE Alu -20 122 25 6080 31 3 0 chr6 67288550 67289269 -115125973 - L1PA3 LINE L1 -9 6146 5426 24147 65 7 16 chr6 67289269 67292475 -115122767 - L1P LINE L1 -2970 3176 2 21351 52 2 2 chr6 67292462 67295209 -115120033 - L1P LINE L1 -771 5375 2629 * 238 305 24 37 chr6 67296041 67296123 -115119119 + MER5B DNA MER1_type 96 176 -2 21 0 0 0 chr6 67298565 67298586 -115116656 + AT_rich Low_complexity Low_complexity 1 21 0 357 311 159 48 chr6 67299405 67299909 -115115333 + HAL1 LINE L1 35 594 -1913 695 285 111 40 chr6 67299910 67300978 -115114264 + HAL1 LINE L1 619 1884 -623 414 297 153 18 chr6 67301053 67301380 -115113862 + HAL1 LINE L1 1974 2344 -163 21 57 0 0 chr6 67301598 67301633 -115113609 + AT_rich Low_complexity Low_complexity 1 35 0 243 271 51 0 chr6 67302443 67302502 -115112740 - MIR SINE MIR -109 99 38 1678 191 70 61 chr6 67302634 67303179 -115112063 + LTR49 LTR ERV1 1 550 -45 761 230 5 47 chr6 67303599 67303812 -115111430 + LTR49-int LTR ERV1 1086 1289 -5042 512 184 0 18 chr6 67303857 67303971 -115111271 + LTR49-int LTR ERV1 1290 1401 -4930 4206 21 1 0 chr6 67304060 67304658 -115110584 - L1P1 LINE L1 -388 5767 5169 8013 167 42 38 chr6 67304658 67306532 -115108710 + LTR49-int LTR ERV1 4450 6330 -1 1369 163 68 131 chr6 67306533 67307104 -115108138 + LTR49 LTR ERV1 6 540 -55 1071 300 76 10 chr6 67307977 67308464 -115106778 - LTR33A LTR ERVL -2 521 3 1039 207 91 42 chr6 67308498 67309055 -115106187 - LTR48 LTR ERV1 -74 713 1 2536 158 68 0 chr6 67309069 67309526 -115105716 + Tigger1 DNA MER2_type 1 488 -1930 8363 119 5 15 chr6 67309552 67310748 -115104494 - HSMAR1 DNA Mariner -6 1281 96 2827 9 0 6 chr6 67310748 67311064 -115104178 + AluYb8 SINE Alu 1 314 -4 8363 119 5 15 chr6 67311064 67311160 -115104082 - HSMAR1 DNA Mariner -1191 96 1 5776 133 19 4 chr6 67311160 67312133 -115103109 + Tigger1 DNA MER2_type 491 1478 -940 2866 10 0 0 chr6 67312135 67312446 -115102796 + AluYa5 SINE Alu 1 311 0 645 237 0 15 chr6 67312456 67312591 -115102651 + FLAM_A SINE Alu 1 133 0 29760 101 9 8 chr6 67312600 67318333 -115096909 + L1PA7 LINE L1 714 6460 -9 877 213 11 11 chr6 67318333 67318507 -115096735 + AluJo SINE Alu 127 300 -12 4534 126 141 6 chr6 67318507 67319346 -115095896 + Tigger1 DNA MER2_type 1467 2418 0 23 68 0 0 chr6 67319591 67319635 -115095607 + AT_rich Low_complexity Low_complexity 1 44 0 2414 110 29 8 chr6 67320861 67321244 -115093998 - MER4C LTR ERV1 0 465 75 4202 202 88 15 chr6 67321244 67322798 -115092444 - MER52A LTR ERV1 0 1755 1 45364 113 23 19 chr6 67322809 67325123 -115090119 - MER52A-int LTR ERV1 -9 7082 4779 2135 116 0 0 chr6 67325123 67325399 -115089843 - AluSp SINE Alu -23 290 15 45364 113 23 19 chr6 67325399 67326346 -115088896 - MER52A-int LTR ERV1 -2312 4779 3837 1764 181 50 8 chr6 67326346 67326706 -115088536 + THE1C LTR MaLR 1 375 0 9408 136 43 23 chr6 67326706 67328255 -115086987 + THE1B-int LTR MaLR 1 1580 0 1775 148 42 79 chr6 67328255 67328633 -115086609 + THE1B LTR MaLR 1 364 0 45364 113 23 19 chr6 67328633 67331995 -115083247 - MER52A-int LTR ERV1 -3254 3837 490 231 36 0 0 chr6 67331995 67332023 -115083219 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 45364 113 23 19 chr6 67332023 67332298 -115082944 - MER52A-int LTR ERV1 -6601 490 147 1955 152 0 3 chr6 67332298 67332627 -115082615 - AluSg SINE Alu 0 328 1 45364 113 23 19 chr6 67332627 67332775 -115082467 - MER52A-int LTR ERV1 -6944 147 1 6893 177 149 22 chr6 67332775 67334332 -115080910 - MER52A LTR ERV1 0 1755 1 450 101 0 25 chr6 67334333 67334412 -115080830 - MER4C LTR ERV1 -388 77 1 2639 133 8 107 chr6 67334427 67335080 -115080162 - MER4C-int LTR ERV1 -3 6595 6008 7616 28 3 1 chr6 67335081 67336575 -115078667 - L1PA2 LINE L1 -1 6154 4660 987 154 7 0 chr6 67336575 67336724 -115078518 - AluSg/x SINE Alu -31 281 132 12348 162 62 53 chr6 67336724 67340578 -115074664 - MER4C-int LTR ERV1 -587 6011 786 1888 202 34 31 chr6 67340579 67341159 -115074083 - MER4C-int LTR ERV1 -3734 3024 1830 243 226 203 15 chr6 67341165 67341298 -115073944 - MER34C LTR ERV1 -268 317 160 513 125 11 23 chr6 67341335 67341423 -115073819 - MER4C-int LTR ERV1 -3214 2732 2646 * 1477 247 46 30 chr6 67341419 67341852 -115073390 - MER4C-int LTR ERV1 -4048 2283 1844 2314 152 134 23 chr6 67341887 67342533 -115072709 - MER4C-int LTR ERV1 -5772 826 1 2796 106 38 16 chr6 67342539 67342991 -115072251 - MER4C LTR ERV1 -3 462 1 1798 135 37 57 chr6 67343224 67343543 -115071699 + AluSx SINE Alu 1 312 0 38 0 0 0 chr6 67343560 67343598 -115071644 + AT_rich Low_complexity Low_complexity 1 38 0 261 0 0 0 chr6 67343930 67343959 -115071283 + (CA)n Simple_repeat Simple_repeat 2 30 0 2723 165 28 28 chr6 67344997 67345566 -115069676 - L1MC3 LINE L1 -7 7778 7210 228 143 0 0 chr6 67346341 67346383 -115068859 + (CA)n Simple_repeat Simple_repeat 1 42 0 201 182 0 0 chr6 67346724 67346757 -115068485 + A-rich Low_complexity Low_complexity 1 33 0 637 302 95 29 chr6 67346801 67347043 -115068199 + MIR SINE MIR 2 259 -3 303 209 45 0 chr6 67347118 67347202 -115068040 + MIR SINE MIR 54 143 -65 390 254 127 0 chr6 67347939 67348073 -115067169 + L1MEc LINE L1 43 193 -6203 2627 143 2 2 chr6 67348082 67348515 -115066727 - ERVL LTR ERVL -1688 4076 3644 193 353 44 0 chr6 67348519 67348587 -115066655 + MER5A DNA MER1_type 108 178 -11 186 254 30 30 chr6 67348844 67348911 -115066331 + MIR SINE MIR 84 150 -112 488 262 182 23 chr6 67349546 67349760 -115065482 + MIR SINE MIR 15 262 0 1648 157 42 11 chr6 67350055 67350341 -115064901 - AluJo SINE Alu -17 295 1 5442 83 55 4 chr6 67350986 67351933 -115063309 + L1P3 LINE L1 4540 5536 -618 330 305 44 40 chr6 67352288 67352537 -115062705 + L1MC5 LINE L1 7511 7760 -201 648 103 9 86 chr6 67352542 67352658 -115062584 - THE1C LTR MaLR -268 107 1 294 213 25 41 chr6 67352674 67352796 -115062446 - L1MC4 LINE L1 -825 7217 7098 362 176 20 66 chr6 67353399 67353506 -115061736 - L1MC4 LINE L1 0 8042 7898 440 297 38 34 chr6 67353540 67353749 -115061493 + MLT1J LTR MaLR 301 510 -1 1186 58 0 7 chr6 67354868 67355022 -115060220 + L1PA5 LINE L1 5991 6143 -11 22 0 0 0 chr6 67355022 67355044 -115060198 + AT_rich Low_complexity Low_complexity 1 22 0 2376 54 7 0 chr6 67355635 67355931 -115059311 + L1PA3 LINE L1 5855 6152 -3 6478 60 13 12 chr6 67355954 67356814 -115058428 + L1PA7 LINE L1 5294 6154 0 27 0 0 0 chr6 67356829 67356856 -115058386 + AT_rich Low_complexity Low_complexity 1 27 0 687 219 66 25 chr6 67357177 67357373 -115057869 - MER3 DNA MER1_type 0 209 6 319 245 93 72 chr6 67358463 67358837 -115056405 + L1MEc LINE L1 954 1290 -4915 1160 259 35 37 chr6 67358961 67359367 -115055875 + L1M4 LINE L1 226 630 -5912 18583 175 23 13 chr6 67359381 67365347 -115049895 + L1MA1 LINE L1 13 6081 -1640 4742 174 34 35 chr6 67365347 67366413 -115048829 + MER11C LTR ERVK 3 1067 -4 18583 175 23 13 chr6 67366413 67368065 -115047177 + L1MA1 LINE L1 6081 7714 -7 28 29 0 0 chr6 67368065 67368100 -115047142 + AT_rich Low_complexity Low_complexity 1 35 0 3319 210 55 95 chr6 67368118 67369461 -115045781 + L1M4 LINE L1 632 1919 -4727 2307 201 26 28 chr6 67370071 67370642 -115044600 + L1MB7 LINE L1 5615 6184 0 696 258 130 12 chr6 67370639 67370961 -115044281 + L1M4 LINE L1 4940 5299 -1345 * 1103 242 91 58 chr6 67371792 67372189 -115043053 - MLT1J1 LTR MaLR 0 446 37 2221 104 0 0 chr6 67372983 67373291 -115041951 + AluSq SINE Alu 1 308 -5 395 311 0 8 chr6 67373357 67373489 -115041753 + LTR16C LTR ERVL 361 491 0 243 324 216 10 chr6 67373507 67373609 -115041633 - MIR SINE MIR -121 141 19 197 255 0 20 chr6 67373621 67373672 -115041570 + MIR3 SINE MIR 155 204 -4 2232 89 0 3 chr6 67373771 67374063 -115041179 - AluY SINE Alu -20 291 1 6030 153 5 11 chr6 67375493 67376549 -115038693 + L1PA11 LINE L1 4067 5115 -1031 * 22795 55 8 4 chr6 67376542 67379534 -115035708 - L1PA4 LINE L1 -751 5395 2392 5723 56 4 1 chr6 67379536 67380266 -115034976 + L1PA4 LINE L1 5419 6150 -5 5804 123 14 10 chr6 67380277 67381379 -115033863 + L1PA11 LINE L1 5098 6173 -1 398 411 37 25 chr6 67381443 67381686 -115033556 + L2 LINE L2 2938 3183 -89 256 200 0 17 chr6 67383647 67383707 -115031535 + LTR68 LTR ERV1 1 59 -681 198 0 0 0 chr6 67383737 67383759 -115031483 + (TG)n Simple_repeat Simple_repeat 1 22 0 1468 189 37 11 chr6 67383759 67384029 -115031213 - AluJb SINE Alu -33 279 3 315 203 17 34 chr6 67384283 67384401 -115030841 + (TA)n Simple_repeat Simple_repeat 1 116 0 372 266 32 98 chr6 67384401 67384717 -115030525 - L1MC4 LINE L1 -124 7918 7624 2766 175 8 4 chr6 67384759 67385256 -115029986 - L1PA15 LINE L1 -2 6163 5665 9040 243 39 11 chr6 67385256 67387403 -115027839 - L1PA13 LINE L1 -2085 4712 2480 1914 124 10 17 chr6 67387403 67387702 -115027540 + AluSq SINE Alu 1 297 -16 9040 243 39 11 chr6 67387702 67388121 -115027121 - L1PA13 LINE L1 -4317 2480 2074 675 178 15 0 chr6 67388122 67388257 -115026985 + L1MDa LINE L1 2511 2647 -3893 1188 235 10 6 chr6 67388300 67388611 -115026631 + L1MDa LINE L1 2775 3086 -3454 26062 56 5 3 chr6 67388650 67392800 -115022442 - L1PA4 LINE L1 -1 6154 1996 831 143 41 27 chr6 67392800 67392947 -115022295 + AluSg/x SINE Alu 68 216 -94 3028 206 20 9 chr6 67392981 67393641 -115021601 - L1PA13 LINE L1 -4801 1986 1320 359 159 29 14 chr6 67393730 67393799 -115021443 - MER94 DNA DNA -49 85 16 257 254 0 0 chr6 67394240 67394299 -115020943 + LTR40a LTR ERVL 454 512 -7 25 0 0 0 chr6 67395205 67395230 -115020012 + AT_rich Low_complexity Low_complexity 1 25 0 241 344 0 0 chr6 67395525 67395618 -115019624 + L1MC4 LINE L1 6611 6703 -1339 * 293 300 0 0 chr6 67395542 67395632 -115019610 - L1MC4 LINE L1 -1339 6703 6614 240 300 0 0 chr6 67395624 67395714 -115019528 + L1MC4 LINE L1 6614 6703 -1339 * 268 294 18 18 chr6 67396217 67396319 -115018923 + GA-rich Low_complexity Low_complexity 1 102 0 21 71 0 0 chr6 67396926 67396968 -115018274 + AT_rich Low_complexity Low_complexity 1 42 0 1681 198 64 17 chr6 67397174 67397579 -115017663 - MSTA LTR MaLR -4 424 1 217 269 108 46 chr6 67397600 67397730 -115017512 - MIR3 SINE MIR -68 140 3 16043 56 5 0 chr6 67399340 67403217 -115012025 + L1PA4 LINE L1 2258 6149 -6 2067 147 6 0 chr6 67403256 67403575 -115011667 + HERVK11 LTR ERVK 1 321 -7632 * 25759 109 13 2 chr6 67403570 67407219 -115008023 + HERVK11 LTR ERVK 206 3892 -4061 1057 149 13 1 chr6 67407219 67409170 -115006072 - ALR/Alpha Satellite centromeric 0 1974 1 1262 125 8 5 chr6 67409209 67411236 -115004006 - ALR/Alpha Satellite centromeric 0 6790 4770 185 0 40 0 chr6 67411236 67411261 -115003981 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7507 30 0 0 chr6 67411261 67412331 -115002911 - L1PA3 LINE L1 -10 6145 5077 1262 125 8 5 chr6 67412331 67415980 -114999262 - ALR/Alpha Satellite centromeric -2019 4771 1 2942 157 20 6 chr6 67415980 67416484 -114998758 - MER9 LTR ERVK 0 511 1 2041 133 6 0 chr6 67416484 67416806 -114998436 - HERVK9 LTR ERVK 0 5916 4936 41213 92 9 3 chr6 67416861 67422463 -114992779 - HERVK9 LTR ERVK -282 5634 1 3154 152 0 8 chr6 67422463 67422978 -114992264 - MER9 LTR ERVK 0 511 1 1077 111 0 0 chr6 67422978 67423181 -114992061 - ALR/Alpha Satellite centromeric 0 203 1 1219 140 6 2 chr6 67423192 67430154 -114985088 - ALR/Alpha Satellite centromeric -3 6992 1 1172 143 3 1 chr6 67430167 67431767 -114983475 - ALR/Alpha Satellite centromeric 0 1603 1 1172 146 6 2 chr6 67431779 67434185 -114981057 - ALR/Alpha Satellite centromeric 0 2414 1 1817 33 0 0 chr6 67434185 67434397 -114980845 - L1P1 LINE L1 -381 5774 5563 247 33 0 0 chr6 67434392 67434422 -114980820 - L1P1 LINE L1 -1242 4904 4875 * 1179 154 10 1 chr6 67434422 67434441 -114980801 + ALR/Alpha Satellite centromeric 1 18 -3300 3238 34 0 0 chr6 67434441 67434823 -114980419 + L1PA3 LINE L1 5770 6155 0 1179 154 10 1 chr6 67434823 67437697 -114977545 + ALR/Alpha Satellite centromeric 18 3305 -13 1214 142 5 1 chr6 67437711 67449679 -114965563 + ALR/Alpha Satellite centromeric 1 12007 -15 1238 140 2 2 chr6 67449697 67452179 -114963063 + ALR/Alpha Satellite centromeric 1 2482 -26 41041 63 9 2 chr6 67452194 67458302 -114956940 - L1PA3 LINE L1 -3 6152 10 1273 138 3 2 chr6 67458306 67463904 -114951338 + ALR/Alpha Satellite centromeric 1 5603 -26 40930 46 28 2 chr6 67463908 67469902 -114945340 - L1PA2 LINE L1 0 6155 1 1355 130 3 0 chr6 67469902 67491472 -114923770 + ALR/Alpha Satellite centromeric 1 21624 0 1260 140 7 3 chr6 67491488 67499649 -114915593 + ALR/Alpha Satellite centromeric 1 8193 0 1336 133 7 1 chr6 67499661 67526544 -114888698 + ALR/Alpha Satellite centromeric 1 27045 0 1246 130 6 0 chr6 67526558 67532627 -114882615 + ALR/Alpha Satellite centromeric 1 6105 0 1639 187 0 14 chr6 67534046 67534335 -114880907 + AluJb SINE Alu 1 285 -27 1155 214 80 42 chr6 67535581 67536034 -114879208 - HsTC2 DNA Tc2 -10 1888 1243 * 1448 255 74 2 chr6 67536006 67536410 -114878832 - HsTC2 DNA Tc2 -1385 513 81 24 0 0 0 chr6 67536821 67536845 -114878397 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 48 chr6 67537685 67537701 -114877541 + AT_rich Low_complexity Low_complexity 1 16 -24 980 164 16 0 chr6 67537701 67537890 -114877352 + L1MA5A LINE L1 6101 6292 -5 27 0 0 48 chr6 67537890 67537915 -114877327 + AT_rich Low_complexity Low_complexity 16 40 0 215 287 85 21 chr6 67539134 67539228 -114876014 + L2 LINE L2 2269 2368 -946 1934 199 53 13 chr6 67539422 67539815 -114875427 + MLT2C2 LTR ERVL 1 409 -55 279 143 24 60 chr6 67539827 67539911 -114875331 + (TATG)n Simple_repeat Simple_repeat 3 83 0 1686 84 0 5 chr6 67540424 67540638 -114874604 - AluSc SINE Alu -18 291 79 22 0 0 0 chr6 67541477 67541499 -114873743 + AT_rich Low_complexity Low_complexity 1 22 0 4450 219 16 29 chr6 67541591 67542645 -114872597 + MER45B DNA AcHobo 1 1040 0 389 303 69 17 chr6 67543562 67543737 -114871505 + MIR SINE MIR 72 255 -7 349 263 62 102 chr6 67543916 67544190 -114871052 + MLT1J LTR MaLR 109 371 -140 25 65 0 0 chr6 67544518 67544564 -114870678 + AT_rich Low_complexity Low_complexity 1 46 0 364 211 173 0 chr6 67544573 67544677 -114870565 + MER20 DNA MER1_type 1 122 -97 15792 34 1 2 chr6 67545130 67547065 -114868177 - L1PA3 LINE L1 -1573 4573 2641 7610 28 0 1 chr6 67547073 67548680 -114866562 + L1PA3 LINE L1 4573 6155 0 2820 73 5 8 chr6 67548680 67549058 -114866184 + L1PA6 LINE L1 5770 6153 -1 198 303 10 50 chr6 67549482 67549581 -114865661 + MIR SINE MIR 168 262 0 2153 118 0 44 chr6 67549636 67549957 -114865285 + AluSx SINE Alu 1 307 -5 20226 113 16 43 chr6 67549970 67556362 -114858880 + L1PA7 LINE L1 1 6152 -2 271 214 0 0 chr6 67556924 67556980 -114858262 + L1MC/D LINE L1 5831 5886 -1922 2501 110 52 75 chr6 67557159 67557597 -114857645 + MSTA LTR MaLR 1 428 0 317 380 72 13 chr6 67557690 67557927 -114857315 - MIR SINE MIR -9 253 3 289 345 17 17 chr6 67558750 67558866 -114856376 - MIR SINE MIR -75 133 18 21 36 0 0 chr6 67562195 67562223 -114853019 + AT_rich Low_complexity Low_complexity 1 28 0 185 303 10 61 chr6 67562882 67562981 -114852261 - MIR SINE MIR -104 158 65 203 385 13 0 chr6 67563102 67563180 -114852062 + L2 LINE L2 3194 3272 -41 207 0 0 0 chr6 67563192 67563215 -114852027 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 805 99 0 0 chr6 67564085 67564196 -114851046 + AluSg/x SINE Alu 178 288 -22 234 180 0 0 chr6 67564198 67564248 -114850994 + (TA)n Simple_repeat Simple_repeat 2 51 0 598 324 54 21 chr6 67564431 67564672 -114850570 + MIR SINE MIR 6 254 -8 483 62 0 0 chr6 67565258 67565323 -114849919 - L1PA3 LINE L1 -3 6152 6088 1959 45 0 4 chr6 67566080 67566327 -114848915 + L1PA3 LINE L1 5908 6153 -2 183 269 19 19 chr6 67567025 67567077 -114848165 + L2 LINE L2 3262 3313 0 865 257 83 105 chr6 67567178 67567844 -114847398 - MER77 LTR ERV1 -8 597 54 24 32 0 0 chr6 67568033 67568064 -114847178 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 67568723 67568746 -114846496 + AT_rich Low_complexity Low_complexity 1 23 0 259 298 50 40 chr6 67569226 67569424 -114845818 + L1M4 LINE L1 4498 4697 -1449 22 0 0 0 chr6 67569775 67569797 -114845445 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 67570001 67570023 -114845219 + AT_rich Low_complexity Low_complexity 1 22 0 14508 90 4 6 chr6 67570078 67572054 -114843188 - L1P LINE L1 -4160 1986 14 22 0 0 0 chr6 67572072 67572094 -114843148 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 67572461 67572489 -114842753 + AT_rich Low_complexity Low_complexity 1 28 0 1642 262 143 18 chr6 67572672 67573337 -114841905 - L1ME3A LINE L1 -6 6164 5417 714 194 101 24 chr6 67573575 67573823 -114841419 - Charlie5 DNA MER1_type 0 2617 2351 * 9083 143 79 22 chr6 67573820 67575420 -114839822 + Tigger2 DNA MER2_type 1027 2718 0 563 318 30 15 chr6 67575422 67575727 -114839515 + MLT1J2 LTR MaLR 24 367 -83 2178 131 126 5 chr6 67575738 67576120 -114839122 + MSTA LTR MaLR 1 428 0 1651 125 8 0 chr6 67576120 67576376 -114838866 + MSTA-int LTR MaLR 1 258 -1393 301 355 57 40 chr6 67577027 67577255 -114837987 + L2 LINE L2 2494 2725 -589 2343 61 0 54 chr6 67577348 67577661 -114837581 - AluY SINE Alu -15 296 1 268 306 90 35 chr6 67577685 67577829 -114837413 + L2 LINE L2 2927 3078 -194 24 0 0 0 chr6 67579079 67579103 -114836139 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 67579360 67579382 -114835860 + AT_rich Low_complexity Low_complexity 1 22 0 217 373 39 20 chr6 67581305 67581466 -114833776 + MIR3 SINE MIR 40 202 -38 781 228 24 80 chr6 67581954 67582204 -114833038 - L2 LINE L2 -1 3312 3077 1760 258 136 26 chr6 67582224 67582887 -114832355 - L2 LINE L2 -427 2887 2152 498 280 27 7 chr6 67583866 67584016 -114831226 - LTR33 LTR ERVL -2 519 367 435 283 49 68 chr6 67584108 67584242 -114831000 - LTR33 LTR ERVL -319 202 72 784 263 0 22 chr6 67584242 67584421 -114830821 - MER45A DNA AcHobo 0 178 4 435 283 49 68 chr6 67584421 67584491 -114830751 - LTR33 LTR ERVL -449 72 2 496 304 65 0 chr6 67584494 67584662 -114830580 + MIR SINE MIR 82 260 -2 266 320 156 8 chr6 67585150 67585272 -114829970 + MIR SINE MIR 8 147 -115 25 31 0 0 chr6 67585933 67585965 -114829277 + AT_rich Low_complexity Low_complexity 1 32 0 23898 47 1 0 chr6 67588079 67591866 -114823376 + L1PA4 LINE L1 2359 6149 -6 759 148 0 0 chr6 67591907 67592022 -114823220 + HERVK11 LTR ERVK 1 115 -7838 3228 210 8 34 chr6 67592371 67592806 -114822436 + L1M4 LINE L1 4420 4826 -1320 1774 151 7 3 chr6 67592806 67593090 -114822152 - AluSx SINE Alu -7 305 21 3228 210 8 34 chr6 67593090 67593439 -114821803 + L1M4 LINE L1 4826 5183 -963 702 158 25 0 chr6 67593494 67593614 -114821628 - Charlie1a DNA MER1_type 0 1455 1333 23 0 0 0 chr6 67593614 67593637 -114821605 + AT_rich Low_complexity Low_complexity 1 23 0 51 58 0 0 chr6 67593688 67593774 -114821468 + AT_rich Low_complexity Low_complexity 1 86 0 4951 193 54 35 chr6 67593786 67594062 -114821180 - Charlie1a DNA MER1_type -1439 1322 1053 1175 122 15 5 chr6 67594062 67594259 -114820983 + L1MA1 LINE L1 6104 6302 0 4951 193 54 35 chr6 67594259 67595178 -114820064 - Charlie1a DNA MER1_type -1708 1053 99 2112 126 3 0 chr6 67595178 67595472 -114819770 - AluSp SINE Alu -18 295 1 4951 193 54 35 chr6 67595472 67595573 -114819669 - Charlie1a DNA MER1_type -2662 99 1 236 230 212 62 chr6 67595661 67595774 -114819468 - MIR3 SINE MIR -41 167 38 5485 52 6 0 chr6 67595893 67596571 -114818671 + L1PA5 LINE L1 5469 6150 -4 362 333 68 45 chr6 67596718 67596982 -114818260 - L2 LINE L2 -229 3084 2815 1818 255 60 30 chr6 67598082 67598650 -114816592 + L1MA8 LINE L1 466 1050 -6439 4077 245 42 39 chr6 67598673 67600565 -114814677 + L1MA8 LINE L1 2008 3921 -3644 2137 132 3 0 chr6 67600565 67600875 -114814367 + AluY SINE Alu 1 311 0 4077 245 42 39 chr6 67600875 67601210 -114814032 + L1MA8 LINE L1 3921 4253 -3312 389 295 0 0 chr6 67601327 67601432 -114813810 + AluJb SINE Alu 195 299 -3 5131 187 15 67 chr6 67601434 67601593 -114813649 + L1MA8 LINE L1 5117 5283 -2282 1934 169 33 28 chr6 67601593 67601955 -114813287 - THE1B LTR MaLR 0 364 1 5131 187 15 67 chr6 67601955 67603016 -114812226 + L1MA8 LINE L1 5283 6139 -1426 2297 160 32 28 chr6 67603016 67603448 -114811794 - Tigger2a DNA MER2_type 0 434 1 5131 187 15 67 chr6 67603448 67603941 -114811301 + L1MA8 LINE L1 6139 6656 -909 2172 183 28 14 chr6 67603943 67604365 -114810877 - MSTB1 LTR MaLR 0 432 5 6306 213 91 16 chr6 67604369 67605903 -114809339 - MSTB1-int LTR MaLR 0 1651 2 2244 182 26 5 chr6 67605905 67606328 -114808914 - MSTB1 LTR MaLR 0 432 1 3485 166 26 15 chr6 67606328 67607062 -114808180 + L1MA8 LINE L1 6654 7395 -315 422 301 52 36 chr6 67607057 67607502 -114807740 + HAL1b LINE L1 458 909 -439 * 418 326 71 22 chr6 67607997 67608491 -114806751 + L1MEd LINE L1 316 865 -5254 632 292 119 9 chr6 67608498 67608724 -114806518 - MIR SINE MIR -2 260 10 243 256 108 0 chr6 67608772 67608901 -114806341 + L1MEd LINE L1 895 1037 -5082 369 328 101 5 chr6 67609218 67609416 -114805826 + HAL1 LINE L1 1372 1588 -919 21 0 0 0 chr6 67609548 67609569 -114805673 + AT_rich Low_complexity Low_complexity 1 21 0 2480 31 0 0 chr6 67610367 67610655 -114804587 + AluYb8 SINE Alu 1 288 -30 17365 70 4 3 chr6 67610757 67613119 -114802123 - L1P LINE L1 -3781 2365 1 1056 172 72 78 chr6 67614115 67614435 -114800807 - LTR47A LTR ERVL -3 449 132 5118 139 19 9 chr6 67614464 67615991 -114799251 - L1PA16 LINE L1 -6 6160 4617 1159 247 167 0 chr6 67615993 67616418 -114798824 + L1PA16 LINE L1 4132 4627 -1519 480 206 0 0 chr6 67616419 67616516 -114798726 - LTR47A LTR ERVL -355 97 1 4823 245 32 82 chr6 67616848 67617927 -114797315 - L1P3 LINE L1 -3692 2769 1638 1947 155 10 3 chr6 67617927 67618230 -114797012 - AluSx SINE Alu -7 305 1 4823 245 32 82 chr6 67618230 67620025 -114795217 - L1P3 LINE L1 -4823 1638 5 1447 143 0 23 chr6 67620413 67620672 -114794570 - L1M3 LINE L1 -387 5781 5529 774 231 4 69 chr6 67620776 67621053 -114794189 + L1 LINE L1 5101 5359 -787 310 188 14 0 chr6 67621053 67621122 -114794120 + MER67D LTR ERV1 442 511 -3 767 310 126 20 chr6 67621127 67621519 -114793723 + L2 LINE L2 2625 3089 -224 2248 183 87 11 chr6 67621519 67621988 -114793254 + MLT1D LTR MaLR 1 505 0 767 310 126 20 chr6 67621988 67622158 -114793084 + L2 LINE L2 3089 3239 -74 240 252 47 84 chr6 67622441 67622548 -114792694 + MLT1I LTR MaLR 138 240 -169 856 231 98 0 chr6 67623168 67623371 -114791871 - MER58A DNA MER1_type 0 224 2 211 152 0 87 chr6 67623508 67623527 -114791715 + (CA)n Simple_repeat Simple_repeat 2 21 -22 2945 203 49 10 chr6 67623527 67624154 -114791088 + MER82 DNA MER2_type 1 652 -1 211 152 0 87 chr6 67624154 67624180 -114791062 + (CA)n Simple_repeat Simple_repeat 21 43 0 1687 191 18 6 chr6 67624182 67624518 -114790724 - MLT2C1 LTR ERVL -57 340 1 328 172 23 81 chr6 67624552 67624639 -114790603 + L1MC5 LINE L1 7665 7746 -215 1132 236 186 48 chr6 67624796 67625317 -114789925 - MLT1E LTR MaLR 0 593 1 24 0 0 0 chr6 67625494 67625518 -114789724 + AT_rich Low_complexity Low_complexity 1 24 0 394 360 64 20 chr6 67625724 67626021 -114789221 - L1MDb LINE L1 -5173 1236 927 432 301 0 0 chr6 67626027 67626173 -114789069 - AluYb8 SINE Alu 0 318 173 24820 104 13 4 chr6 67626307 67629966 -114785276 + HERVK11 LTR ERVK 206 3898 -4055 1033 142 10 2 chr6 67629967 67630798 -114784444 - ALR/Alpha Satellite centromeric 0 837 1 1111 133 7 0 chr6 67630812 67631741 -114783501 - ALR/Alpha Satellite centromeric 0 935 1 820 140 83 0 chr6 67631752 67631909 -114783333 - ALR/Alpha Satellite centromeric 0 172 3 1175 128 7 1 chr6 67631948 67633973 -114781269 - ALR/Alpha Satellite centromeric 0 6798 4787 224 30 30 0 chr6 67633973 67634006 -114781236 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7241 36 0 0 chr6 67634006 67635088 -114780154 - L1PA3 LINE L1 -13 6142 5064 1175 128 7 1 chr6 67635088 67638705 -114776537 - ALR/Alpha Satellite centromeric -2010 4788 1 581 118 0 20 chr6 67638705 67638807 -114776435 - MER9 LTR ERVK 0 511 412 382 86 0 17 chr6 67638908 67638966 -114776276 - MER9 LTR ERVK -454 57 1 1837 121 4 0 chr6 67638966 67639247 -114775995 - HERVK9 LTR ERVK 0 5916 5635 39900 89 5 2 chr6 67639342 67644962 -114770280 - HERVK9 LTR ERVK -282 5634 1 3173 154 0 4 chr6 67644962 67645475 -114769767 - MER9 LTR ERVK 0 511 1 1123 127 3 0 chr6 67645475 67646024 -114769218 - ALR/Alpha Satellite centromeric 0 550 1 1149 137 8 1 chr6 67646037 67648919 -114766323 - ALR/Alpha Satellite centromeric 0 2902 1 1138 141 11 3 chr6 67648930 67652621 -114762621 - ALR/Alpha Satellite centromeric -3 3719 1 1122 152 2 1 chr6 67652634 67654234 -114761008 - ALR/Alpha Satellite centromeric 0 1603 1 1199 138 4 1 chr6 67654246 67655842 -114759400 - ALR/Alpha Satellite centromeric 0 1600 1 1218 141 5 1 chr6 67655942 67670339 -114744903 + ALR/Alpha Satellite centromeric 1 14450 -23 7268 32 2 0 chr6 67670341 67671211 -114744031 - L1PA3 LINE L1 0 6155 5284 5466 51 0 0 chr6 67671212 67671901 -114743341 + L1PA3 LINE L1 4604 5292 -854 1131 160 4 0 chr6 67671901 67674942 -114740300 + ALR/Alpha Satellite centromeric 1 3052 0 1202 132 9 0 chr6 67675043 67675786 -114739456 + ALR/Alpha Satellite centromeric 1 749 0 1263 137 7 0 chr6 67675800 67683196 -114732046 + ALR/Alpha Satellite centromeric 1 7440 -33 1337 136 6 1 chr6 67683304 67700819 -114714423 + ALR/Alpha Satellite centromeric 1 17595 -57 297 0 0 0 chr6 67751297 67751330 -114663912 + (A)n Simple_repeat Simple_repeat 1 33 0 24 53 0 0 chr6 67751574 67751612 -114663630 + AT_rich Low_complexity Low_complexity 1 38 0 322 319 62 0 chr6 67754228 67754341 -114660901 - L1ME3A LINE L1 -289 5881 5762 542 267 122 28 chr6 67754917 67755295 -114659947 - L1ME3A LINE L1 -461 5660 5282 357 222 43 8 chr6 67755471 67755588 -114659654 - L1ME3A LINE L1 -1098 5048 4928 2254 203 48 15 chr6 67755630 67756108 -114659134 - MLT1D LTR MaLR -4 501 8 698 312 109 31 chr6 67756124 67756730 -114658512 - L1ME3A LINE L1 -1277 4869 4217 225 224 20 0 chr6 67756799 67756848 -114658394 - L1 LINE L1 -2029 4117 4068 260 296 78 45 chr6 67756885 67757243 -114657999 - L1 LINE L1 -2136 4010 3641 597 219 44 44 chr6 67757408 67757613 -114657629 - L1MA9 LINE L1 -38 6274 6070 1637 141 22 25 chr6 67757614 67757890 -114657352 + MER1B DNA MER1_type 1 275 -64 445 119 0 60 chr6 67757904 67757988 -114657254 + MER1B DNA MER1_type 253 331 -2 3156 203 40 13 chr6 67757991 67758991 -114656251 - L1MA9 LINE L1 -114 6075 5043 923 227 9 22 chr6 67758989 67759218 -114656024 + L1MA9 LINE L1 4821 5046 -1100 * 1877 231 110 31 chr6 67759264 67759918 -114655324 - L1ME2 LINE L1 -8 6156 5451 353 241 52 9 chr6 67759941 67760057 -114655185 - L1ME2 LINE L1 -848 5298 5178 5175 77 19 4 chr6 67760087 67760788 -114654454 - L1PA7 LINE L1 -1 6153 5443 1158 167 19 13 chr6 67760788 67761023 -114654219 + L1M LINE L1 5183 5417 -743 427 255 49 22 chr6 67761023 67761207 -114654035 - L1ME2 LINE L1 -1017 5129 4941 496 270 45 0 chr6 67761225 67761403 -114653839 - L1ME2 LINE L1 -1194 4952 4767 341 273 20 10 chr6 67761402 67761501 -114653741 - L1ME2 LINE L1 -2019 4127 4028 * 379 123 14 14 chr6 67761526 67761599 -114653643 + A-rich Low_complexity Low_complexity 3 75 0 348 24 0 0 chr6 67762370 67762411 -114652831 + (TG)n Simple_repeat Simple_repeat 2 42 0 29 28 0 0 chr6 67764469 67764505 -114650737 + AT_rich Low_complexity Low_complexity 1 36 0 222 118 0 0 chr6 67764545 67764579 -114650663 + (T)n Simple_repeat Simple_repeat 1 34 0 423 347 191 6 chr6 67764874 67765214 -114650028 - L2 LINE L2 -5 3308 2906 22 0 0 0 chr6 67765254 67765276 -114649966 + AT_rich Low_complexity Low_complexity 1 22 0 193 245 204 0 chr6 67765280 67765329 -114649913 + L2 LINE L2 1728 1786 -1528 358 282 243 24 chr6 67765343 67765598 -114649644 + L2 LINE L2 2040 2350 -964 354 143 57 0 chr6 67765642 67765712 -114649530 + MER31B LTR ERV1 1 74 -392 1558 163 0 95 chr6 67766002 67766339 -114648903 - AluJb SINE Alu 0 312 8 21 36 0 0 chr6 67766576 67766604 -114648638 + AT_rich Low_complexity Low_complexity 1 28 0 2236 116 0 0 chr6 67769177 67769480 -114645762 - AluSq SINE Alu -10 303 1 1694 275 24 35 chr6 67769572 67770169 -114645073 + MLT1G LTR MaLR 1 590 0 186 167 0 0 chr6 67770258 67770294 -114644948 + (TG)n Simple_repeat Simple_repeat 2 37 0 189 0 0 0 chr6 67770324 67770345 -114644897 + (TATTG)n Simple_repeat Simple_repeat 2 22 0 330 80 0 0 chr6 67771233 67771283 -114643959 + (TG)n Simple_repeat Simple_repeat 2 51 0 226 339 55 28 chr6 67773647 67773756 -114641486 - MIR3 SINE MIR -11 197 86 1033 171 25 15 chr6 67773968 67774167 -114641075 - L1PA15 LINE L1 -2 6163 5963 6184 126 13 9 chr6 67774733 67775737 -114639505 - L1MA2 LINE L1 -1 7722 6715 4024 175 43 55 chr6 67775743 67776742 -114638500 - L1MA2 LINE L1 -2021 5544 4558 226 94 0 0 chr6 67776751 67776783 -114638459 - Alu SINE Alu -94 205 174 228 95 0 0 chr6 67776783 67776825 -114638417 - L1MA2 LINE L1 -4624 2941 2900 206 158 26 26 chr6 67776826 67776902 -114638340 + (TA)n Simple_repeat Simple_repeat 2 77 0 10997 177 31 6 chr6 67776904 67777923 -114637319 - L1MA2 LINE L1 -4668 2897 1905 2974 87 4 66 chr6 67777923 67778394 -114636848 - MLT2A1 LTR ERVL -2 442 1 10997 177 31 6 chr6 67778394 67779378 -114635864 - L1MA2 LINE L1 -5660 1905 844 1264 232 46 3 chr6 67779395 67779723 -114635519 - L1ME1 LINE L1 -168 5998 5657 23 54 0 0 chr6 67779770 67779807 -114635435 + AT_rich Low_complexity Low_complexity 1 37 0 31 58 0 0 chr6 67781348 67781400 -114633842 + AT_rich Low_complexity Low_complexity 1 52 0 2508 210 66 52 chr6 67782321 67783020 -114632222 - MER21B LTR ERV1 -57 806 98 367 237 0 82 chr6 67783089 67783186 -114632056 - MER21B LTR ERV1 -774 89 1 1092 240 76 22 chr6 67783812 67784125 -114631117 + AluJb SINE Alu 3 330 0 715 270 74 35 chr6 67784567 67785027 -114630215 + L1MC5 LINE L1 7256 7733 -228 21 36 0 0 chr6 67785495 67785523 -114629719 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 67785935 67785963 -114629279 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 67786000 67786023 -114629219 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 67786969 67786994 -114628248 + AT_rich Low_complexity Low_complexity 1 25 0 411 154 8 41 chr6 67788480 67788603 -114626639 + (TA)n Simple_repeat Simple_repeat 1 119 0 3406 242 50 46 chr6 67789026 67789104 -114626138 + L1M4 LINE L1 2176 2252 -3894 3233 119 25 52 chr6 67789104 67789694 -114625548 - L1PA13 LINE L1 0 6163 5590 3406 242 50 46 chr6 67789694 67791297 -114623945 + L1M4 LINE L1 2252 4041 -2105 1926 60 28 0 chr6 67791883 67792134 -114623108 + AluY SINE Alu 1 258 -53 333 0 0 0 chr6 67792187 67792224 -114623018 + (CA)n Simple_repeat Simple_repeat 2 38 0 184 239 0 18 chr6 67792224 67792337 -114622905 + (TA)n Simple_repeat Simple_repeat 1 111 0 23 0 0 0 chr6 67793479 67793502 -114621740 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr6 67793858 67793893 -114621349 + AT_rich Low_complexity Low_complexity 1 35 0 316 213 19 12 chr6 67793898 67794058 -114621184 + (TA)n Simple_repeat Simple_repeat 2 162 0 245 360 59 20 chr6 67795161 67795314 -114619928 + MIR3 SINE MIR 46 204 -4 29 47 0 0 chr6 67796912 67796955 -114618287 + AT_rich Low_complexity Low_complexity 1 43 0 36 62 0 0 chr6 67796995 67797059 -114618183 + AT_rich Low_complexity Low_complexity 1 64 0 848 332 136 24 chr6 67797568 67798474 -114616768 - L2 LINE L2 -54 3259 2256 190 286 0 0 chr6 67798745 67798787 -114616455 - MIR SINE MIR -17 245 204 1344 161 75 34 chr6 67799693 67800011 -114615231 - THE1B LTR MaLR -43 332 1 11164 100 13 3 chr6 67800011 67801576 -114613666 - THE1B-int LTR MaLR 0 1580 1 2174 137 19 25 chr6 67801578 67801942 -114613300 - THE1B LTR MaLR -2 362 1 278 331 63 14 chr6 67802081 67802223 -114613019 - MIR SINE MIR -40 222 74 295 276 71 25 chr6 67804094 67804310 -114610932 - L1MEc LINE L1 -864 1712 1516 302 296 67 62 chr6 67804435 67804854 -114610388 - L1MEc LINE L1 -4914 1291 871 26 74 0 0 chr6 67805085 67805139 -114610103 + AT_rich Low_complexity Low_complexity 1 54 0 11010 77 12 8 chr6 67805522 67807078 -114608164 - L1P LINE L1 -2163 3983 2422 291 54 0 0 chr6 67807208 67807245 -114607997 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 631 178 0 0 chr6 67807251 67807352 -114607890 - AluJb SINE Alu -31 281 181 22 56 0 0 chr6 67807700 67807736 -114607506 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr6 67808019 67808053 -114607189 + AT_rich Low_complexity Low_complexity 1 34 0 22 70 0 0 chr6 67808164 67808207 -114607035 + AT_rich Low_complexity Low_complexity 1 43 0 388 247 25 0 chr6 67810161 67810242 -114605000 + MER117 DNA MER1_type 68 150 -47 198 71 0 0 chr6 67810385 67810413 -114604829 + (CA)n Simple_repeat Simple_repeat 1 28 0 651 186 16 23 chr6 67810415 67810544 -114604698 + MLT1D LTR MaLR 1 128 -377 249 222 19 0 chr6 67811589 67811643 -114603599 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 399 322 187 55 chr6 67812849 67813448 -114601794 + L3 LINE CR1 516 1249 -328 2074 111 4 0 chr6 67813448 67813727 -114601515 + AluSg SINE Alu 1 280 -30 399 322 187 55 chr6 67813727 67813928 -114601314 + L3 LINE CR1 1249 1422 -155 266 291 13 0 chr6 67814941 67815020 -114600222 + MER94 DNA DNA 38 117 -17 307 327 39 48 chr6 67815437 67815645 -114599597 + L2 LINE L2 2772 2977 -337 216 0 0 0 chr6 67816854 67816878 -114598364 + (TA)n Simple_repeat Simple_repeat 2 25 0 219 255 0 0 chr6 67817889 67817936 -114597306 + (CA)n Simple_repeat Simple_repeat 2 48 0 2047 123 3 10 chr6 67819522 67819823 -114595419 + AluSc SINE Alu 1 299 -10 307 304 128 47 chr6 67819904 67820161 -114595081 - HAL1 LINE L1 -955 1552 1275 786 287 109 35 chr6 67820340 67820706 -114594536 - LTR16C LTR ERVL -3 488 96 3842 161 20 8 chr6 67820794 67821496 -114593746 - MER67C LTR ERV1 0 710 1 430 297 13 32 chr6 67823325 67823480 -114591762 - MIR SINE MIR -105 157 6 1907 173 22 22 chr6 67823572 67823942 -114591300 + MLT1A2 LTR MaLR 3 372 -2 25 0 0 0 chr6 67824101 67824126 -114591116 + AT_rich Low_complexity Low_complexity 1 25 0 193 261 0 0 chr6 67824228 67824274 -114590968 + MIR SINE MIR 70 115 -147 592 288 77 34 chr6 67824295 67824528 -114590714 - MIR SINE MIR -18 244 2 27 0 0 0 chr6 67825226 67825253 -114589989 + AT_rich Low_complexity Low_complexity 1 27 0 457 289 30 86 chr6 67826280 67826581 -114588661 - MER67C-int LTR ERV1 -242 4694 4411 309 187 131 37 chr6 67826610 67826717 -114588525 - LTR37A LTR ERV1 -309 117 1 2035 190 21 23 chr6 67826720 67827151 -114588091 - MER67C-int LTR ERV1 -683 4253 3824 787 167 8 0 chr6 67827153 67827343 -114587899 + FLAM_C SINE Alu 1 191 0 2008 221 27 80 chr6 67827383 67827852 -114587390 - MER67C-int LTR ERV1 -1121 3815 3387 2398 73 0 0 chr6 67827852 67828154 -114587088 - AluY SINE Alu -9 302 1 2008 221 27 80 chr6 67828154 67828318 -114586924 - MER67C-int LTR ERV1 -1549 3387 3216 2885 178 36 92 chr6 67828455 67829322 -114585920 - MER67C-int LTR ERV1 -1723 4180 2408 3195 163 86 13 chr6 67829351 67829976 -114585266 - LTR51 LTR ERV1 0 671 1 448 90 0 112 chr6 67831570 67831659 -114583583 - MADE1 DNA Mariner 0 80 2 405 248 28 62 chr6 67833803 67833948 -114581294 + MIR SINE MIR 74 213 -49 227 239 0 42 chr6 67834036 67834107 -114581135 + L1MC3 LINE L1 6600 6667 -1118 293 305 30 69 chr6 67834198 67834329 -114580913 + L2 LINE L2 3145 3270 -2 460 330 140 24 chr6 67834435 67834816 -114580426 + L2 LINE L2 2762 3192 -121 193 320 21 21 chr6 67834818 67834864 -114580378 + L2 LINE L2 3118 3163 -150 306 0 0 0 chr6 67834864 67834898 -114580344 + (TG)n Simple_repeat Simple_repeat 1 34 0 193 320 21 21 chr6 67834898 67834948 -114580294 + L2 LINE L2 3162 3214 -99 2175 114 0 0 chr6 67835567 67835895 -114579347 - AluSg SINE Alu 0 330 3 400 308 84 0 chr6 67836218 67836325 -114578917 + MER91C DNA MER1_type 1 116 -24 1845 146 42 0 chr6 67837394 67837682 -114577560 - AluSx SINE Alu -12 300 1 214 217 22 0 chr6 67838555 67838601 -114576641 - L2 LINE L2 -11 3302 3256 225 211 0 0 chr6 67838867 67838924 -114576318 + GA-rich Low_complexity Low_complexity 1 57 0 219 316 13 0 chr6 67841687 67841763 -114573479 - MIR SINE MIR -62 146 69 538 191 15 15 chr6 67842556 67842692 -114572550 + (TATG)n Simple_repeat Simple_repeat 2 137 0 224 146 24 0 chr6 67842693 67842734 -114572508 + GA-rich Low_complexity Low_complexity 1 42 0 380 111 14 0 chr6 67843063 67843135 -114572107 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 25 31 0 0 chr6 67844814 67844846 -114570396 + AT_rich Low_complexity Low_complexity 1 32 0 358 239 64 0 chr6 67846968 67847077 -114568165 - MER103 DNA DNA -43 123 8 805 313 36 27 chr6 67848584 67849029 -114566213 + L2 LINE L2 2660 3111 -202 420 133 11 22 chr6 67849039 67849129 -114566113 + CT-rich Low_complexity Low_complexity 2 90 0 383 212 77 104 chr6 67849130 67849352 -114565890 + L2 LINE L2 3098 3313 0 361 351 73 58 chr6 67851342 67851998 -114563244 - L2 LINE L2 -1907 1407 742 7205 79 146 3 chr6 67852510 67853579 -114561663 - MER11B LTR ERVK -14 1222 1 342 0 0 0 chr6 67853579 67853617 -114561625 + (ATG)n Simple_repeat Simple_repeat 3 40 0 333 305 130 11 chr6 67853618 67853795 -114561447 - MIR SINE MIR -6 256 59 1699 97 0 4 chr6 67854306 67854534 -114560708 - AluSc SINE Alu -7 302 76 531 285 68 63 chr6 67854536 67854743 -114560499 + MIR SINE MIR 24 231 -31 222 171 0 0 chr6 67854791 67854832 -114560410 + (TA)n Simple_repeat Simple_repeat 2 42 0 233 179 0 77 chr6 67854833 67854911 -114560331 + L1MC3 LINE L1 6572 6643 -1142 * 251 333 0 0 chr6 67854842 67854932 -114560310 - L1MC4 LINE L1 -1339 6703 6614 249 322 0 0 chr6 67854936 67855026 -114560216 - L1MC4 LINE L1 -1339 6703 6614 226 182 121 0 chr6 67855027 67855093 -114560149 + L1MC3 LINE L1 6572 6645 -1140 * 252 222 0 16 chr6 67855034 67855097 -114560145 - L1MCa LINE L1 -4359 2067 2006 274 261 0 22 chr6 67855130 67855222 -114560020 - L1MC4 LINE L1 -1339 6703 6614 705 231 0 0 chr6 67855255 67855428 -114559814 + (TA)n Simple_repeat Simple_repeat 2 174 0 296 223 0 43 chr6 67855428 67855522 -114559720 + L1MC4 LINE L1 6614 6703 -1339 252 271 47 0 chr6 67855527 67855612 -114559630 + L1MC4 LINE L1 6615 6703 -1339 * 256 242 0 63 chr6 67855544 67855639 -114559603 - L1MC4 LINE L1 -1339 6703 6615 234 256 128 0 chr6 67855652 67855730 -114559512 + L1MC4 LINE L1 6614 6701 -1341 232 250 95 24 chr6 67855744 67855828 -114559414 - L1MC4 LINE L1 -1339 6703 6614 281 317 10 0 chr6 67855828 67855929 -114559313 + (TA)n Simple_repeat Simple_repeat 2 103 0 229 243 0 14 chr6 67855929 67855999 -114559243 + L1MCa LINE L1 1995 2063 -4363 227 146 91 0 chr6 67856018 67856073 -114559169 - L1MCa LINE L1 -4361 2065 2006 236 294 0 22 chr6 67856104 67856196 -114559046 + L1MC4 LINE L1 6614 6703 -1339 242 161 0 65 chr6 67856197 67856259 -114558983 - LTR66 LTR ERVL -172 438 381 21 0 0 0 chr6 67857495 67857516 -114557726 + AT_rich Low_complexity Low_complexity 1 21 0 454 122 0 24 chr6 67857933 67858015 -114557227 - MADE1 DNA Mariner 0 80 1 673 188 8 0 chr6 67861713 67861869 -114553373 + FLAM_A SINE Alu 1 157 0 321 345 36 0 chr6 67861905 67862015 -114553227 - MIR SINE MIR -73 189 76 369 0 0 0 chr6 67862569 67862610 -114552632 + (TTA)n Simple_repeat Simple_repeat 2 42 0 483 281 55 32 chr6 67862690 67862907 -114552335 + MER112 DNA MER1_type 1 222 -38 185 322 17 0 chr6 67863072 67863131 -114552111 - L2 LINE L2 -5 3308 3249 256 258 32 11 chr6 67863900 67863993 -114551249 + LTR33 LTR ERVL 427 521 0 23 33 0 0 chr6 67864950 67864980 -114550262 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr6 67865303 67865349 -114549893 + AT_rich Low_complexity Low_complexity 1 46 0 324 0 0 0 chr6 67865372 67865408 -114549834 + (TA)n Simple_repeat Simple_repeat 1 36 0 2107 132 0 0 chr6 67865411 67865715 -114549527 - AluSx SINE Alu -8 304 1 5308 163 24 21 chr6 67865722 67866988 -114548254 - L1MA4A LINE L1 -5 7000 5726 7585 179 39 196 chr6 67866994 67868263 -114546979 - L1MA4A LINE L1 -3955 2894 1428 1083 199 62 62 chr6 67868263 67868539 -114546703 + AluJo SINE Alu 1 276 -36 215 0 0 62 chr6 67868539 67868571 -114546671 + (TAA)n Simple_repeat Simple_repeat 2 31 0 7585 179 39 196 chr6 67868571 67869932 -114545310 - L1MA4A LINE L1 -5420 1429 448 417 227 0 0 chr6 67869932 67870007 -114545235 + AluJ/FLAM SINE Alu 1 75 -227 7585 179 39 196 chr6 67870007 67870231 -114545011 - L1MA4A LINE L1 -6401 448 191 22 94 0 0 chr6 67870366 67870430 -114544812 + AT_rich Low_complexity Low_complexity 1 64 0 203 226 47 162 chr6 67870984 67871219 -114544023 - L2 LINE L2 -1 3312 3105 826 241 19 19 chr6 67871349 67871565 -114543677 - MER20 DNA MER1_type -3 216 1 22 0 0 0 chr6 67872386 67872408 -114542834 + AT_rich Low_complexity Low_complexity 1 22 0 404 318 76 65 chr6 67873025 67873500 -114541742 + L1MEd LINE L1 679 1158 -4961 242 299 81 46 chr6 67873699 67873896 -114541346 + L1MEd LINE L1 1270 1634 -856 212 393 0 18 chr6 67874733 67874845 -114540397 + MIR3 SINE MIR 87 196 -12 2015 125 34 43 chr6 67876121 67876717 -114538525 + L1MA8 LINE L1 5051 5647 -653 1771 198 43 3 chr6 67876721 67877049 -114538193 + MER7A DNA MER2_type 6 344 -2 2504 174 30 52 chr6 67877050 67877157 -114538085 + L1MA8 LINE L1 5645 5753 -538 1859 167 132 5 chr6 67877157 67877535 -114537707 + MSTA LTR MaLR 3 428 0 2504 174 30 52 chr6 67877535 67877714 -114537528 + L1MA8 LINE L1 5753 5934 -357 2153 65 28 3 chr6 67877714 67878005 -114537237 - AluY SINE Alu -13 298 1 2504 174 30 52 chr6 67878005 67878314 -114536928 + L1MA8 LINE L1 5934 6228 -63 2602 131 44 21 chr6 67878314 67878641 -114536601 - Tigger2 DNA MER2_type -1 2717 2376 180 0 0 0 chr6 67878641 67878661 -114536581 + (GGA)n Simple_repeat Simple_repeat 2 21 0 2602 131 44 21 chr6 67878661 67878761 -114536481 - Tigger2 DNA MER2_type -342 2376 2280 439 98 16 0 chr6 67878768 67878829 -114536413 + MER8 DNA MER2_type 178 239 0 289 203 0 0 chr6 67878829 67878893 -114536349 + L1MA8 LINE L1 6226 6289 -2 226 188 0 21 chr6 67879040 67879088 -114536154 + (TA)n Simple_repeat Simple_repeat 1 47 0 22 94 0 0 chr6 67879378 67879442 -114535800 + AT_rich Low_complexity Low_complexity 1 64 0 1057 93 0 0 chr6 67879804 67879944 -114535298 - AluSg/x SINE Alu -7 305 166 375 23 0 0 chr6 67879956 67880000 -114535242 + (T)n Simple_repeat Simple_repeat 1 44 0 1363 202 18 90 chr6 67880209 67880596 -114534646 - MLT1A1 LTR MaLR -4 361 3 21 0 0 0 chr6 67882962 67882983 -114532259 + AT_rich Low_complexity Low_complexity 1 21 0 199 316 138 10 chr6 67883267 67883463 -114531779 - MIR SINE MIR -27 235 15 371 285 100 0 chr6 67884515 67884645 -114530597 + MIR SINE MIR 110 252 -10 1651 170 10 42 chr6 67884778 67885090 -114530152 - AluJb SINE Alu -10 302 1 35 101 0 0 chr6 67885695 67885814 -114529428 + AT_rich Low_complexity Low_complexity 1 119 0 277 270 79 0 chr6 67886096 67886185 -114529057 - L1MA10 LINE L1 -63 6271 6176 2124 233 58 35 chr6 67886256 67887038 -114528204 - L1MEc LINE L1 -1547 4668 3869 357 309 35 15 chr6 67887091 67887292 -114527950 - L1MEc LINE L1 -2699 3516 3312 * 2993 261 66 32 chr6 67887290 67888391 -114526851 - L1MEc LINE L1 -5223 1173 35 348 312 119 23 chr6 67888571 67888914 -114526328 + L1ME4a LINE L1 5508 5883 -238 21 57 0 0 chr6 67889012 67889047 -114526195 + AT_rich Low_complexity Low_complexity 1 35 0 447 308 118 19 chr6 67890106 67890317 -114524925 - MIR SINE MIR -1 261 30 1130 202 118 40 chr6 67891843 67892190 -114523052 - MLT1A2 LTR MaLR 0 374 1 4695 152 31 103 chr6 67892719 67893947 -114521295 - L1MC1 LINE L1 -13 6320 5186 202 333 107 0 chr6 67895135 67895219 -114520023 - MIR SINE MIR -58 150 58 2387 25 4 0 chr6 67895860 67896141 -114519101 - L1PA4 LINE L1 -8 6147 5866 726 306 153 29 chr6 67896189 67896962 -114518280 + L2 LINE L2 2392 3262 -51 33 43 0 0 chr6 67896989 67897036 -114518206 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr6 67898946 67898978 -114516264 + AT_rich Low_complexity Low_complexity 1 32 0 1869 158 0 7 chr6 67901155 67901453 -114513789 + AluSx SINE Alu 1 296 -16 2357 84 0 0 chr6 67901872 67902171 -114513071 - AluY SINE Alu -12 299 1 6220 150 10 13 chr6 67902825 67904273 -114510969 + L1MA3 LINE L1 4862 6305 0 2139 98 27 0 chr6 67904379 67904674 -114510568 + AluSg SINE Alu 2 304 -6 721 325 127 17 chr6 67905628 67906046 -114509196 - LTR16B LTR ERVL 0 464 1 380 286 116 45 chr6 67906468 67906779 -114508463 - MLT1H LTR MaLR 0 549 217 241 314 0 0 chr6 67906952 67907022 -114508220 + CT-rich Low_complexity Low_complexity 1 70 0 222 62 0 0 chr6 67907985 67908017 -114507225 + (TG)n Simple_repeat Simple_repeat 2 33 0 1740 140 41 0 chr6 67908275 67908592 -114506650 + AluSx SINE Alu 1 328 0 287 282 183 15 chr6 67909423 67909554 -114505688 - MIR SINE MIR -34 228 76 21 57 0 0 chr6 67910440 67910475 -114504767 + AT_rich Low_complexity Low_complexity 1 35 0 306 169 39 13 chr6 67910642 67910719 -114504523 - MER116 DNA Mariner -1 79 1 333 277 0 12 chr6 67911796 67911879 -114503363 + MIR SINE MIR 3 84 -178 399 191 61 27 chr6 67911884 67912031 -114503211 + MER104 DNA Tc2 4 155 -25 237 205 39 51 chr6 67912130 67912208 -114503034 + MIR SINE MIR 183 259 -3 258 56 0 0 chr6 67912789 67912825 -114502417 + (GA)n Simple_repeat Simple_repeat 1 36 0 289 284 81 54 chr6 67913092 67913239 -114502003 + MIR SINE MIR 57 207 -55 588 231 170 0 chr6 67913239 67913386 -114501856 - MER5B DNA MER1_type 0 178 7 275 360 72 27 chr6 67913451 67913826 -114501416 - L2 LINE L2 -1128 2186 1795 352 168 50 59 chr6 67914214 67914315 -114500927 + MER94 DNA DNA 1 100 -34 22 56 0 0 chr6 67916241 67916277 -114498965 + AT_rich Low_complexity Low_complexity 1 36 0 12920 37 2 0 chr6 67916613 67918951 -114496291 - L1PA4 LINE L1 0 6155 3813 2337 46 0 0 chr6 67918951 67919236 -114496006 + L1PA4 LINE L1 3512 3796 -2350 1187 309 125 35 chr6 67920290 67921115 -114494127 - L2 LINE L2 -1 3312 2402 212 335 120 21 chr6 67921212 67921403 -114493839 + MIR SINE MIR 51 260 -2 2339 80 3 0 chr6 67921664 67921963 -114493279 + AluY SINE Alu 1 300 -11 291 254 167 8 chr6 67923247 67923373 -114491869 - MIR SINE MIR 0 262 117 213 280 93 56 chr6 67923530 67923637 -114491605 - L3 LINE CR1 -43 1534 1424 1294 237 171 5 chr6 67924705 67925143 -114490099 + MER69 DNA AcHobo 62 572 -1954 * 1317 240 74 16 chr6 67925138 67925625 -114489617 + MER69 DNA AcHobo 2012 2526 0 343 307 58 26 chr6 67927093 67927282 -114487960 + MER117 DNA MER1_type 1 195 -2 462 318 130 0 chr6 67931571 67931794 -114483448 - MIR SINE MIR -6 256 5 397 368 78 5 chr6 67931801 67932005 -114483237 - MIR SINE MIR -21 241 23 275 0 29 0 chr6 67933058 67933093 -114482149 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1165 217 4 22 chr6 67933336 67933562 -114481680 - MER58A DNA MER1_type 0 224 3 31 0 0 0 chr6 67934636 67934667 -114480575 + AT_rich Low_complexity Low_complexity 1 31 0 210 71 0 0 chr6 67935310 67935338 -114479904 + (TC)n Simple_repeat Simple_repeat 2 29 0 331 280 148 71 chr6 67936760 67936942 -114478300 - L1ME3A LINE L1 -301 5938 5743 599 297 82 15 chr6 67937047 67937600 -114477642 - L1ME3A LINE L1 -697 5538 4955 263 321 15 0 chr6 67937825 67937959 -114477283 - L1ME3A LINE L1 -1562 4653 4518 1795 107 0 0 chr6 67938420 67938672 -114476570 - L1PA7 LINE L1 -1 6153 5902 11705 112 28 37 chr6 67938672 67940962 -114474280 - L1P3 LINE L1 -4162 2299 1 266 283 104 24 chr6 67941019 67941231 -114474011 - L1ME3A LINE L1 -4655 1741 1513 19955 185 34 51 chr6 67941254 67943082 -114472160 + L1PA12 LINE L1 24 1881 -5725 1664 137 113 30 chr6 67943082 67943418 -114471824 + THE1B LTR MaLR 1 364 0 10116 97 76 17 chr6 67943418 67944909 -114470333 + THE1B-int LTR MaLR 1 1579 -1 1946 129 74 34 chr6 67944910 67945260 -114469982 + THE1B LTR MaLR 1 364 0 19955 185 34 51 chr6 67945260 67950248 -114464994 + L1PA12 LINE L1 1879 7537 -69 243 290 76 21 chr6 67950303 67950448 -114464794 - L1ME3A LINE L1 -4927 1469 1317 27 29 0 0 chr6 67951380 67951414 -114463828 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr6 67951761 67951790 -114463452 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 67952581 67952603 -114462639 + AT_rich Low_complexity Low_complexity 1 22 0 655 274 68 8 chr6 67954538 67954772 -114460470 - LTR16C LTR ERVL -20 471 224 330 26 0 0 chr6 67954864 67954903 -114460339 + (CAAAA)n Simple_repeat Simple_repeat 4 42 0 536 218 78 7 chr6 67955045 67955187 -114460055 - MIR SINE MIR -59 203 52 690 279 139 35 chr6 67956469 67956871 -114458371 + MLT1J LTR MaLR 68 511 0 25 31 0 0 chr6 67957720 67957752 -114457490 + AT_rich Low_complexity Low_complexity 1 32 0 2244 86 0 0 chr6 67957945 67958225 -114457017 - AluSc SINE Alu -13 296 17 2174 123 7 0 chr6 67958277 67958585 -114456657 - AluSq SINE Alu -3 310 1 1934 189 5 20 chr6 67958759 67959155 -114456087 - MLT1B LTR MaLR 0 390 1 207 200 0 0 chr6 67959206 67959241 -114456001 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 261 250 24 0 chr6 67959242 67959326 -114455916 - L1MC4 LINE L1 -1339 6703 6618 22 0 0 0 chr6 67960594 67960616 -114454626 + AT_rich Low_complexity Low_complexity 1 22 0 762 248 128 38 chr6 67961163 67961586 -114453656 - LTR37B LTR ERV1 0 468 8 948 65 0 0 chr6 67961931 67962055 -114453187 + (TA)n Simple_repeat Simple_repeat 1 124 0 216 341 34 23 chr6 67962260 67962348 -114452894 + MER5A DNA MER1_type 3 91 -98 2203 184 20 14 chr6 67962724 67963357 -114451885 - MER67C LTR ERV1 0 710 2 25 51 0 0 chr6 67963455 67963494 -114451748 + AT_rich Low_complexity Low_complexity 1 39 0 2147 130 82 15 chr6 67964283 67964684 -114450558 - MSTA LTR MaLR 0 428 1 2312 67 3 7 chr6 67964917 67965215 -114450027 + AluSc SINE Alu 1 297 -12 330 281 52 10 chr6 67965846 67965942 -114449300 - L2 LINE L2 -19 3294 3195 1776 111 24 31 chr6 67966860 67967183 -114448059 + AluSx SINE Alu 1 321 0 2940 127 49 153 chr6 67967186 67967948 -114447294 - L1MB7 LINE L1 -23 6161 5480 26 30 0 0 chr6 67969098 67969131 -114446111 + AT_rich Low_complexity Low_complexity 1 33 0 237 294 29 0 chr6 67970947 67971015 -114444227 - MIR SINE MIR -148 114 45 479 344 94 27 chr6 67971416 67971856 -114443386 - L2 LINE L2 -255 3017 2531 21 71 0 0 chr6 67972012 67972054 -114443188 + AT_rich Low_complexity Low_complexity 1 42 0 181 287 26 87 chr6 67974425 67974540 -114440702 + MIR3 SINE MIR 63 170 -38 201 94 0 0 chr6 67974750 67974782 -114440460 + (TC)n Simple_repeat Simple_repeat 1 32 0 303 28 0 0 chr6 67974785 67974821 -114440421 + (CA)n Simple_repeat Simple_repeat 1 36 0 214 337 12 60 chr6 67974970 67975136 -114440106 - MIR SINE MIR -25 237 80 22 35 0 0 chr6 67976659 67976688 -114438554 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 67977628 67977649 -114437593 + AT_rich Low_complexity Low_complexity 1 21 0 1511 199 27 3 chr6 67978267 67978564 -114436678 - AluJo SINE Alu -6 306 3 23 54 0 0 chr6 67979072 67979109 -114436133 + AT_rich Low_complexity Low_complexity 1 37 0 185 0 40 0 chr6 67979149 67979174 -114436068 + (CA)n Simple_repeat Simple_repeat 1 26 0 1948 110 3 11 chr6 67981065 67981347 -114433895 + AluSx SINE Alu 5 284 -28 1578 237 6 20 chr6 67982597 67982939 -114432303 + MLT1A2 LTR MaLR 31 367 -7 707 256 132 68 chr6 67983970 67984310 -114430932 - LTR33 LTR ERVL -110 411 50 770 307 4 31 chr6 67984582 67984836 -114430406 - MIR SINE MIR -5 257 11 1850 144 115 18 chr6 67985957 67986347 -114428895 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr6 67986475 67986498 -114428744 + AT_rich Low_complexity Low_complexity 1 23 0 255 254 8 110 chr6 67987463 67987581 -114427661 - L2 LINE L2 -21 3292 3187 619 385 42 15 chr6 67987983 67988503 -114426739 - L2 LINE L2 -631 2683 2150 377 390 11 26 chr6 67989143 67989333 -114425909 - MER5A DNA MER1_type -1 188 2 452 333 59 38 chr6 67990004 67990292 -114424950 + L2 LINE L2 2337 2630 -684 427 248 172 7 chr6 67990426 67990571 -114424671 + MIR SINE MIR 9 177 -85 26 88 0 0 chr6 67991170 67991238 -114424004 + AT_rich Low_complexity Low_complexity 1 68 0 1329 206 41 86 chr6 67993869 67994358 -114420884 - MLT1C LTR MaLR 0 467 1 1187 215 45 5 chr6 67995106 67995329 -114419913 + Tigger7 DNA MER2_type 3 234 -2253 1802 181 24 18 chr6 67995358 67995694 -114419548 - MER2 DNA MER2_type -7 338 1 537 182 0 0 chr6 67995694 67995781 -114419461 + Tigger7 DNA MER2_type 2401 2487 0 1999 123 13 0 chr6 67995893 67996195 -114419047 - AluSc SINE Alu -3 306 1 210 229 66 33 chr6 67996390 67996451 -114418791 - L3 LINE CR1 -3 1574 1512 212 312 65 22 chr6 67997994 67998132 -114417110 + MIR SINE MIR 98 241 -21 268 290 0 0 chr6 67998145 67998207 -114417035 - L2 LINE L2 -6 3307 3246 4104 150 25 3 chr6 67998872 67999566 -114415676 + L1PA16 LINE L1 5449 6157 -9 25 0 0 0 chr6 67999573 67999598 -114415644 + AT_rich Low_complexity Low_complexity 1 25 0 22 80 0 0 chr6 67999924 67999974 -114415268 + AT_rich Low_complexity Low_complexity 1 50 0 22 106 0 0 chr6 68001631 68001716 -114413526 + AT_rich Low_complexity Low_complexity 1 85 0 22 35 0 0 chr6 68002375 68002404 -114412838 + AT_rich Low_complexity Low_complexity 1 29 0 5050 123 19 8 chr6 68002689 68003488 -114411754 - L1PA15 LINE L1 -3 6162 5355 395 143 31 41 chr6 68003610 68003708 -114411534 + L1MA8 LINE L1 6195 6291 0 243 320 27 0 chr6 68004011 68004086 -114411156 - MLT1G LTR MaLR -96 446 370 482 312 17 46 chr6 68004161 68004334 -114410908 - MLT1G LTR MaLR -298 292 125 480 270 18 0 chr6 68004370 68004481 -114410761 - MLT1G LTR MaLR -482 113 1 446 270 54 14 chr6 68004481 68004629 -114410613 + MIR SINE MIR 9 162 -100 1616 193 50 16 chr6 68004633 68004996 -114410246 + THE1C LTR MaLR 1 375 0 9155 129 46 31 chr6 68004996 68006549 -114408693 + THE1C-int LTR MaLR 1 1576 -4 1745 145 86 9 chr6 68006554 68006878 -114408364 + THE1C LTR MaLR 1 349 -26 473 94 0 0 chr6 68006879 68006943 -114408299 + THE1-int LTR MaLR 536 599 -981 375 246 18 27 chr6 68006953 68007063 -114408179 + MIR SINE MIR 154 262 0 2235 232 58 28 chr6 68008167 68008765 -114406477 - MLT1E3 LTR MaLR -3 621 6 220 200 0 0 chr6 68008860 68008900 -114406342 + (CAT)n Simple_repeat Simple_repeat 2 41 0 21 71 0 0 chr6 68011632 68011674 -114403568 + AT_rich Low_complexity Low_complexity 1 42 0 1637 169 3 3 chr6 68012377 68012667 -114402575 + L1PA15 LINE L1 5876 6165 0 28 29 0 0 chr6 68012711 68012746 -114402496 + AT_rich Low_complexity Low_complexity 1 35 0 366 23 0 0 chr6 68012756 68012799 -114402443 + (CA)n Simple_repeat Simple_repeat 2 44 0 229 176 66 77 chr6 68013145 68013236 -114402006 + MIR SINE MIR 134 223 -39 27 29 0 0 chr6 68014152 68014186 -114401056 + AT_rich Low_complexity Low_complexity 1 34 0 299 284 165 15 chr6 68014423 68014564 -114400678 - MIR SINE MIR -36 172 13 23 0 0 0 chr6 68014977 68015000 -114400242 + AT_rich Low_complexity Low_complexity 1 23 0 2369 91 0 19 chr6 68015350 68015668 -114399574 - AluSx SINE Alu 0 312 1 405 296 126 5 chr6 68016162 68016368 -114398874 + MIR SINE MIR 32 262 0 298 148 0 0 chr6 68017138 68017192 -114398050 + L1MA4A LINE L1 6248 6301 -2 388 330 73 46 chr6 68017236 68017758 -114397484 - L1M4 LINE L1 -1111 5035 4500 306 281 21 0 chr6 68017874 68017970 -114397272 + L1M2 LINE L1 2397 2494 -4355 539 274 122 88 chr6 68018002 68018731 -114396511 + L1MEc LINE L1 1623 2376 -4020 970 284 134 38 chr6 68018864 68019947 -114395295 + L1MEc LINE L1 2732 3918 -2297 193 314 58 0 chr6 68020613 68020699 -114394543 + MIR SINE MIR 114 204 -58 373 299 76 21 chr6 68021432 68021576 -114393666 - MIR SINE MIR -94 168 17 24 0 0 0 chr6 68021632 68021656 -114393586 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 68021691 68021715 -114393527 + AT_rich Low_complexity Low_complexity 1 24 0 606 255 67 36 chr6 68023187 68023448 -114391794 + L1ME4a LINE L1 5584 5856 -265 43 47 0 0 chr6 68023455 68023519 -114391723 + AT_rich Low_complexity Low_complexity 1 64 0 978 229 86 50 chr6 68023632 68023933 -114391309 + MER110 LTR ERV1 14 325 -166 21 57 0 0 chr6 68023959 68023994 -114391248 + AT_rich Low_complexity Low_complexity 1 35 0 189 107 0 0 chr6 68024319 68024347 -114390895 + (TC)n Simple_repeat Simple_repeat 1 28 0 358 351 73 12 chr6 68025037 68025282 -114389960 - L1MC/D LINE L1 -2148 5660 5401 1723 197 0 3 chr6 68025356 68025656 -114389586 - AluJb SINE Alu -11 301 3 330 115 64 39 chr6 68025794 68025872 -114389370 - MER116 DNA Mariner 0 80 1 32 43 0 0 chr6 68026762 68026808 -114388434 + AT_rich Low_complexity Low_complexity 1 46 0 299 337 310 4 chr6 68027024 68027279 -114387963 - L2 LINE L2 -1 3271 2939 256 287 81 29 chr6 68027434 68027570 -114387672 + MLT1H LTR MaLR 29 171 -378 283 238 0 0 chr6 68027734 68027814 -114387428 + L1MC4 LINE L1 6624 6703 -1339 189 0 0 0 chr6 68027814 68027835 -114387407 + (TA)n Simple_repeat Simple_repeat 1 21 0 642 210 6 32 chr6 68028766 68028923 -114386319 + L1PB4 LINE L1 6001 6153 -3 200 135 27 0 chr6 68029987 68030024 -114385218 + T-rich Low_complexity Low_complexity 2 39 0 1734 144 37 0 chr6 68030035 68030306 -114384936 - AluJb SINE Alu -31 281 1 28 0 0 0 chr6 68030339 68030367 -114384875 + AT_rich Low_complexity Low_complexity 1 28 0 300 286 198 21 chr6 68030628 68030820 -114384422 + MIR SINE MIR 31 256 -6 24 0 0 0 chr6 68030828 68030852 -114384390 + AT_rich Low_complexity Low_complexity 1 24 0 226 280 98 38 chr6 68032097 68032229 -114383013 + MIR SINE MIR 91 230 -32 446 70 0 0 chr6 68032415 68032472 -114382770 - L1 LINE L1 -1988 4158 4102 1186 136 40 0 chr6 68032474 68032673 -114382569 + L1PA14 LINE L1 5951 6157 -4 207 0 0 0 chr6 68032680 68032703 -114382539 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 15447 45 5 1 chr6 68033226 68035930 -114379312 - L1PA4 LINE L1 -3 6152 3441 1970 55 0 8 chr6 68035930 68036185 -114379057 - L1PA3 LINE L1 -1708 4438 4186 * 7917 31 3 4 chr6 68036163 68037898 -114377344 + L1PA3 LINE L1 4432 6166 0 27169 50 7 7 chr6 68037898 68041351 -114373891 - L1PA4 LINE L1 -2692 3454 1 21 36 0 0 chr6 68041465 68041493 -114373749 + AT_rich Low_complexity Low_complexity 1 28 0 1112 216 42 12 chr6 68041596 68041837 -114373405 + L1M1 LINE L1 11 258 -7307 * 8718 162 34 17 chr6 68041835 68044961 -114370281 + L1M1 LINE L1 2311 5492 -2073 287 128 0 0 chr6 68044963 68045010 -114370232 + L1MA3 LINE L1 6259 6305 0 1282 223 19 0 chr6 68045031 68045334 -114369908 - AluJo SINE Alu 0 330 23 24 77 0 0 chr6 68045542 68045594 -114369648 + AT_rich Low_complexity Low_complexity 1 52 0 5123 111 3 93 chr6 68045654 68046708 -114368534 + L1PA8A LINE L1 5161 6128 -3 1664 178 126 3 chr6 68047798 68048180 -114367062 - MSTB1 LTR MaLR 0 432 4 22 56 0 0 chr6 68048555 68048591 -114366651 + AT_rich Low_complexity Low_complexity 1 36 0 182 384 41 27 chr6 68048786 68048859 -114366383 - MIR SINE MIR -188 74 1 1829 167 6 3 chr6 68049865 68050176 -114365066 - AluJb SINE Alu 0 312 1 269 337 20 20 chr6 68051727 68051828 -114363414 - MIR SINE MIR -82 180 80 262 305 38 53 chr6 68051997 68052128 -114363114 - L2 LINE L2 -1 3312 3184 1857 276 70 16 chr6 68052177 68052794 -114362448 + L1MEc LINE L1 42 691 -5705 913 225 33 39 chr6 68052801 68053135 -114362107 + L1MEc LINE L1 2104 2435 -3961 253 187 0 80 chr6 68053117 68053192 -114362050 + L1M4 LINE L1 5487 5555 -629 * 789 234 43 8 chr6 68053187 68053422 -114361820 + L1MEc LINE L1 2536 2778 -3437 704 277 41 80 chr6 68053420 68053810 -114361432 + L1ME1 LINE L1 5753 6127 -39 * 1950 127 3 13 chr6 68053967 68054266 -114360976 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr6 68054266 68054288 -114360954 + AT_rich Low_complexity Low_complexity 1 22 0 2021 115 38 3 chr6 68054709 68054997 -114360245 - AluSg SINE Alu -12 298 1 264 342 34 26 chr6 68055171 68055288 -114359954 + MER5B DNA MER1_type 1 118 -60 1508 187 163 23 chr6 68056357 68056800 -114358442 - MLT1D LTR MaLR 0 505 1 185 150 0 25 chr6 68057341 68057381 -114357861 + (GA)n Simple_repeat Simple_repeat 1 39 0 514 291 41 88 chr6 68057627 68057922 -114357320 + L2 LINE L2 3028 3308 -5 344 347 21 14 chr6 68058083 68058227 -114357015 + MIR SINE MIR 2 146 -116 1879 157 2 83 chr6 68058385 68058806 -114356436 + MLT1B LTR MaLR 3 389 -1 22 35 0 0 chr6 68059529 68059558 -114355684 + AT_rich Low_complexity Low_complexity 1 29 0 226 184 0 0 chr6 68061157 68061195 -114354047 - MER3 DNA MER1_type -6 203 166 2471 71 0 3 chr6 68061214 68061525 -114353717 + AluY SINE Alu 1 310 -1 874 179 12 6 chr6 68061544 68061712 -114353530 - MER3 DNA MER1_type -86 123 2 222 91 0 0 chr6 68062160 68062193 -114353049 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1941 136 3 3 chr6 68062240 68062527 -114352715 + AluSg SINE Alu 3 289 -21 2602 102 0 14 chr6 68063382 68063802 -114351440 - L1P LINE L1 -745 5401 4988 3530 66 10 122 chr6 68063826 68064450 -114350792 + L1PA8 LINE L1 5607 6160 -12 321 47 0 0 chr6 68064450 68064493 -114350749 + (CTAAA)n Simple_repeat Simple_repeat 3 45 0 180 0 0 0 chr6 68064662 68064682 -114350560 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 1056 274 93 19 chr6 68065975 68066405 -114348837 + LTR40c LTR ERVL 1 462 -3 3709 40 4 0 chr6 68066438 68066893 -114348349 + L1PA4 LINE L1 5696 6152 -3 202 309 119 32 chr6 68067127 68067253 -114347989 + MIR SINE MIR 38 174 -88 30 0 0 0 chr6 68067366 68067396 -114347846 + AT_rich Low_complexity Low_complexity 1 30 0 416 169 13 0 chr6 68068822 68068899 -114346343 + MER116 DNA Mariner 1 78 -2 786 163 0 0 chr6 68068918 68069053 -114346189 + L1PA16 LINE L1 6023 6157 -9 340 281 49 0 chr6 68069613 68069695 -114345547 + L2 LINE L2 2211 2296 -1018 289 221 99 0 chr6 68069874 68069977 -114345265 + L1ME LINE L1 1410 1484 -4939 183 396 0 43 chr6 68070274 68070413 -114344829 + L2 LINE L2 2959 3091 -181 2152 223 57 4 chr6 68070500 68071011 -114344231 - MER63 DNA MER1_type -13 1047 510 991 205 49 151 chr6 68071023 68071554 -114343688 - MER63C DNA MER1_type -453 477 1 233 245 0 0 chr6 68073075 68073128 -114342114 + (TA)n Simple_repeat Simple_repeat 2 54 0 252 326 43 37 chr6 68073498 68073685 -114341557 - L2 LINE L2 -8 3305 3118 315 0 0 0 chr6 68074279 68074314 -114340928 + (TG)n Simple_repeat Simple_repeat 1 35 0 898 259 106 24 chr6 68074314 68074777 -114340465 + HAL1 LINE L1 1143 1643 -864 1015 277 63 57 chr6 68074792 68075391 -114339851 + L1MC4 LINE L1 7440 8042 0 380 306 149 48 chr6 68075440 68076214 -114339028 + HAL1 LINE L1 1656 2507 0 355 310 120 50 chr6 68076241 68076583 -114338659 + HAL1 LINE L1 1097 1462 -1045 2164 104 0 16 chr6 68076910 68077218 -114338024 - AluSq SINE Alu -10 303 1 212 213 16 16 chr6 68077224 68077285 -114337957 + CT-rich Low_complexity Low_complexity 2 62 0 955 281 18 7 chr6 68078381 68078662 -114336580 - L1ME1 LINE L1 -5 6161 5878 191 340 57 28 chr6 68079793 68079899 -114335343 + L2 LINE L2 2943 3051 -221 313 278 22 11 chr6 68080318 68080408 -114334834 + L2 LINE L2 3182 3272 0 1902 195 17 22 chr6 68080559 68081098 -114334144 + L1ME LINE L1 5132 5665 -501 3899 88 15 0 chr6 68081099 68081642 -114333600 - L1PA12 LINE L1 -68 6100 5550 225 88 0 0 chr6 68081643 68081677 -114333565 + L1PA13 LINE L1 6111 6144 -19 464 300 80 38 chr6 68081689 68082062 -114333180 - L1ME4a LINE L1 -56 6065 5677 * 21930 166 25 25 chr6 68082059 68086942 -114328300 - L1PA11 LINE L1 0 6174 1290 298 95 0 0 chr6 68086942 68087018 -114328224 - AluSc SINE Alu 0 315 240 21930 166 25 25 chr6 68087018 68087337 -114327905 - L1PA11 LINE L1 -4884 1290 938 236 30 30 0 chr6 68087337 68087370 -114327872 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 21930 166 25 25 chr6 68087370 68087516 -114327726 - L1PA11 LINE L1 -5236 938 793 2190 103 0 0 chr6 68087525 68087817 -114327425 + AluY SINE Alu 8 299 -12 14606 28 1 0 chr6 68088238 68090749 -114324493 + L1PA3 LINE L1 3643 6155 0 510 312 83 11 chr6 68091797 68092063 -114323179 - LTR33 LTR ERVL -236 285 1 452 307 92 15 chr6 68092363 68092574 -114322668 - MIR SINE MIR -1 261 36 305 283 12 114 chr6 68093866 68094030 -114321212 - Charlie8 DNA MER1_type -2141 276 130 1409 259 147 21 chr6 68094030 68094513 -114320729 - MLT1G LTR MaLR -2 588 45 239 229 49 0 chr6 68094581 68094642 -114320600 - Charlie8 DNA MER1_type -2286 131 68 4720 158 18 47 chr6 68095437 68096878 -114318364 - L1PB4 LINE L1 0 6156 4748 526 180 0 55 chr6 68096867 68096995 -114318247 + L1PB4 LINE L1 4636 4756 -1390 * 23 0 0 0 chr6 68097175 68097198 -114318044 + AT_rich Low_complexity Low_complexity 1 23 0 745 279 56 12 chr6 68097316 68097639 -114317603 - MER46C DNA MER2_type -1 337 1 371 309 162 25 chr6 68097760 68097964 -114317278 - MIR SINE MIR 0 262 31 290 311 34 79 chr6 68097988 68098165 -114317077 - L3 LINE CR1 -145 1432 1264 341 267 0 11 chr6 68098224 68098314 -114316928 + MLT1H LTR MaLR 23 111 -438 1023 347 90 27 chr6 68098701 68099367 -114315875 - L3 LINE CR1 -375 1202 495 197 132 26 0 chr6 68099408 68099446 -114315796 - L2 LINE L2 0 3313 3275 328 335 67 34 chr6 68099513 68099692 -114315550 + MER5A DNA MER1_type 5 189 0 230 349 69 26 chr6 68099843 68100032 -114315210 - L2 LINE L2 -240 3032 2836 387 297 115 24 chr6 68101401 68101566 -114313676 - MIR SINE MIR -3 259 80 183 139 0 0 chr6 68101797 68101833 -114313409 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 29 28 0 0 chr6 68101973 68102009 -114313233 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr6 68102150 68102175 -114313067 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 68102528 68102551 -114312691 + AT_rich Low_complexity Low_complexity 1 23 0 938 294 56 42 chr6 68103348 68103777 -114311465 + L2 LINE L2 2874 3308 -5 488 260 89 34 chr6 68104517 68104663 -114310579 - L2 LINE L2 -1 3312 3159 185 336 107 20 chr6 68105025 68105174 -114310068 + MIR SINE MIR 79 240 -22 318 313 71 0 chr6 68105780 68105879 -114309363 - L2 LINE L2 0 3313 3208 277 291 106 53 chr6 68105867 68106149 -114309093 + L2 LINE L2 2677 2973 -341 * 356 163 88 0 chr6 68107189 68107269 -114307973 + L1MA9 LINE L1 6188 6274 -38 21 36 0 0 chr6 68107269 68107297 -114307945 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr6 68107800 68107837 -114307405 + AT_rich Low_complexity Low_complexity 1 37 0 215 290 16 16 chr6 68108010 68108072 -114307170 - L2 LINE L2 0 3272 3211 370 278 113 35 chr6 68108076 68108313 -114306929 - MLT1J1 LTR MaLR 0 425 195 258 32 0 0 chr6 68108859 68108890 -114306352 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 317 239 15 75 chr6 68109893 68110027 -114305215 - MLT1J LTR MaLR -317 194 69 26 0 0 0 chr6 68111271 68111297 -114303945 + AT_rich Low_complexity Low_complexity 1 26 0 1276 299 45 53 chr6 68111380 68112204 -114303038 - L2 LINE L2 0 3313 2487 965 289 155 13 chr6 68112204 68112751 -114302491 - L2 LINE L2 -1118 2196 1572 23 33 0 0 chr6 68113859 68113889 -114301353 + AT_rich Low_complexity Low_complexity 1 30 0 2089 95 0 11 chr6 68114017 68114336 -114300906 + AluSc SINE Alu 1 281 -28 21 71 0 0 chr6 68114380 68114422 -114300820 + AT_rich Low_complexity Low_complexity 1 42 0 894 195 0 6 chr6 68114439 68114603 -114300639 + FAM SINE Alu 12 174 -11 202 167 104 0 chr6 68114902 68114950 -114300292 - MIR SINE MIR -108 154 102 372 284 35 17 chr6 68115203 68115319 -114299923 - MIR SINE MIR -108 154 37 216 0 0 0 chr6 68115327 68115351 -114299891 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 272 345 168 0 chr6 68116286 68116399 -114298843 - L2 LINE L2 -2 3311 3180 25 0 0 0 chr6 68118079 68118104 -114297138 + AT_rich Low_complexity Low_complexity 1 25 0 33 94 0 0 chr6 68118135 68118231 -114297011 + AT_rich Low_complexity Low_complexity 1 96 0 21 57 0 0 chr6 68118979 68119014 -114296228 + AT_rich Low_complexity Low_complexity 1 35 0 610 278 6 28 chr6 68119430 68119606 -114295636 + MER5B DNA MER1_type 1 172 -6 225 159 0 0 chr6 68120677 68120721 -114294521 + (TA)n Simple_repeat Simple_repeat 2 45 0 743 291 63 107 chr6 68121070 68121780 -114293462 - MER21B LTR ERV1 -177 686 8 239 309 53 0 chr6 68123114 68123208 -114292034 - L2 LINE L2 0 3272 3174 30 27 0 0 chr6 68123703 68123740 -114291502 + AT_rich Low_complexity Low_complexity 1 37 0 297 350 25 0 chr6 68123858 68123978 -114291264 + MIR SINE MIR 105 227 -35 199 277 0 96 chr6 68125537 68125620 -114289622 + L2 LINE L2 3179 3253 -19 31 58 0 0 chr6 68125641 68125693 -114289549 + AT_rich Low_complexity Low_complexity 1 52 0 204 215 76 101 chr6 68127120 68127199 -114288043 - L2 LINE L2 -42 3271 3195 994 236 19 0 chr6 68127889 68128105 -114287137 - MER58A DNA MER1_type -4 220 1 21 0 0 0 chr6 68128205 68128226 -114287016 + AT_rich Low_complexity Low_complexity 1 21 0 355 284 10 93 chr6 68129013 68129207 -114286035 + MER5B DNA MER1_type 1 178 0 21 0 0 0 chr6 68129220 68129241 -114286001 + AT_rich Low_complexity Low_complexity 1 21 0 237 65 0 0 chr6 68129903 68129934 -114285308 + (T)n Simple_repeat Simple_repeat 1 31 0 22 56 0 0 chr6 68134817 68134853 -114280389 + AT_rich Low_complexity Low_complexity 1 36 0 1074 224 22 0 chr6 68135401 68135673 -114279569 + L1MA4 LINE L1 6020 6297 -3 5894 22 0 0 chr6 68136587 68137277 -114277965 - L1PA3 LINE L1 -1444 4702 4013 7650 21 2 0 chr6 68137277 68138727 -114276515 + L1PA3 LINE L1 4704 6155 0 283 253 24 12 chr6 68140778 68140861 -114274381 + MIR SINE MIR 92 175 -87 23 86 0 0 chr6 68140993 68141051 -114274191 + AT_rich Low_complexity Low_complexity 1 58 0 218 247 79 45 chr6 68141319 68141408 -114273834 - MIR SINE MIR -17 245 154 22 56 0 0 chr6 68142232 68142268 -114272974 + AT_rich Low_complexity Low_complexity 1 36 0 234 0 0 0 chr6 68147047 68147073 -114268169 + (TA)n Simple_repeat Simple_repeat 2 27 0 198 0 0 0 chr6 68147132 68147154 -114268088 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 8383 30 0 1 chr6 68147163 68148934 -114266308 - L1PA4 LINE L1 -3 6152 4383 239 273 0 0 chr6 68149851 68149906 -114265336 + (AATAG)n Simple_repeat Simple_repeat 4 58 0 390 239 0 0 chr6 68150433 68150521 -114264721 - MER94 DNA DNA -34 100 13 536 267 64 12 chr6 68150557 68150729 -114264513 - MIR SINE MIR 0 262 82 23 33 0 0 chr6 68150982 68151012 -114264230 + AT_rich Low_complexity Low_complexity 1 30 0 325 290 65 30 chr6 68151860 68152029 -114263213 + MER5B DNA MER1_type 1 175 -3 232 283 106 26 chr6 68152433 68152546 -114262696 + L2 LINE L2 3192 3313 0 815 235 55 5 chr6 68153810 68154010 -114261232 - MER63A DNA MER1_type 0 210 1 534 241 251 11 chr6 68154109 68154300 -114260942 + MIR SINE MIR 15 251 -11 1944 133 7 3 chr6 68155025 68155310 -114259932 + AluSx SINE Alu 7 292 -20 369 62 0 0 chr6 68155312 68155360 -114259882 + (TG)n Simple_repeat Simple_repeat 2 49 0 405 286 46 129 chr6 68155550 68156047 -114259195 + LTR33A LTR ERVL 64 519 -4 264 30 0 0 chr6 68156934 68156967 -114258275 + (TC)n Simple_repeat Simple_repeat 1 33 0 251 327 106 0 chr6 68156974 68157078 -114258164 + L2 LINE L2 3189 3303 -10 22 0 0 0 chr6 68157157 68157179 -114258063 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr6 68158108 68158151 -114257091 + AT_rich Low_complexity Low_complexity 1 43 0 252 270 54 0 chr6 68158278 68158352 -114256890 + L2 LINE L2 3194 3271 -1 548 299 7 0 chr6 68158856 68159000 -114256242 + MIR SINE MIR 12 156 -106 1672 144 35 66 chr6 68159017 68159365 -114255877 + MER46B DNA MER2_type 25 236 0 424 211 11 11 chr6 68159367 68159462 -114255780 + MIR SINE MIR 158 252 -10 219 356 20 0 chr6 68159730 68159831 -114255411 - L3b LINE CR1 -199 1384 1282 804 285 126 57 chr6 68160090 68161051 -114254191 - L2 LINE L2 -5 3308 2281 2048 193 72 27 chr6 68161072 68161584 -114253658 + LTR55 LTR ERV 1 535 -13 272 280 53 0 chr6 68162010 68162085 -114253157 + L2 LINE L2 3232 3310 -3 29 28 0 0 chr6 68162396 68162432 -114252810 + AT_rich Low_complexity Low_complexity 1 36 0 2147 115 3 0 chr6 68163455 68163759 -114251483 + AluSx SINE Alu 1 305 -7 611 272 56 0 chr6 68164445 68164607 -114250635 - MIR SINE MIR -45 217 47 7437 173 14 8 chr6 68165085 68167327 -114247915 - L1PA13 LINE L1 0 6163 3924 229 296 0 12 chr6 68167437 68167518 -114247724 + (TA)n Simple_repeat Simple_repeat 2 81 0 250 295 32 0 chr6 68167688 68167783 -114247459 - MARNA DNA Mariner -325 261 164 27 0 0 26 chr6 68167870 68167896 -114247346 + AT_rich Low_complexity Low_complexity 1 27 -10 1744 161 3 20 chr6 68167896 68168200 -114247042 - AluJb SINE Alu -13 299 1 27 0 0 26 chr6 68168200 68168211 -114247031 + AT_rich Low_complexity Low_complexity 27 37 0 27 0 0 0 chr6 68168360 68168387 -114246855 + AT_rich Low_complexity Low_complexity 1 27 0 239 275 0 58 chr6 68168561 68168630 -114246612 + MIR3 SINE MIR 97 161 -47 262 378 54 0 chr6 68168794 68168905 -114246337 - L2 LINE L2 -2 3270 3154 203 354 108 31 chr6 68169271 68169494 -114245748 - L2 LINE L2 -556 2758 2519 500 249 136 35 chr6 68170284 68170629 -114244613 - L1MC5 LINE L1 -61 7900 7521 266 312 39 52 chr6 68170796 68170950 -114244292 - L2 LINE L2 -3 3310 3159 4543 38 0 0 chr6 68171947 68172495 -114242747 - L1PA3 LINE L1 -1036 5110 4563 7517 34 0 0 chr6 68172495 68173541 -114241701 + L1PA3 LINE L1 5109 6155 0 182 227 23 23 chr6 68173650 68173694 -114241548 - L2 LINE L2 -16 3297 3254 1129 175 25 30 chr6 68173834 68174034 -114241208 - MER20 DNA MER1_type -1 218 20 190 231 0 0 chr6 68175667 68175706 -114239536 - L2 LINE L2 -672 2642 2604 274 399 23 8 chr6 68176846 68176979 -114238263 - L2 LINE L2 0 3313 3179 288 0 0 0 chr6 68179236 68179268 -114235974 + (T)n Simple_repeat Simple_repeat 1 32 0 241 312 112 32 chr6 68179277 68179402 -114235840 + L2 LINE L2 3136 3270 -2 279 0 0 0 chr6 68182332 68182363 -114232879 + (A)n Simple_repeat Simple_repeat 1 31 0 1266 264 41 95 chr6 68182523 68183178 -114232064 - MER21B LTR ERV1 -146 717 98 246 297 39 39 chr6 68183155 68183283 -114231959 - MER77 LTR ERV1 -412 193 66 * 2858 10 0 0 chr6 68183291 68183602 -114231640 - AluY SINE Alu 0 311 1 782 306 116 42 chr6 68184756 68185188 -114230054 - LTR16B LTR ERVL 0 464 1 337 337 52 37 chr6 68185326 68185727 -114229515 - HERV16 LTR ERVL -414 5240 4834 1654 337 60 25 chr6 68186202 68187261 -114227981 - HERV16 LTR ERVL -1412 4242 3147 1925 327 53 31 chr6 68187264 68188397 -114226845 - HERV16 LTR ERVL -3137 1859 579 1651 236 130 34 chr6 68188397 68188935 -114226307 - MLT1E LTR MaLR -3 590 1 1925 327 53 31 chr6 68188935 68189518 -114225724 - HERV16 LTR ERVL -4417 579 10 781 290 76 40 chr6 68189529 68189974 -114225268 - LTR16B LTR ERVL -3 461 1 355 339 23 8 chr6 68189994 68190124 -114225118 - MIR SINE MIR -108 154 23 23 33 0 0 chr6 68190419 68190449 -114224793 + AT_rich Low_complexity Low_complexity 1 30 0 283 241 81 23 chr6 68190492 68190579 -114224663 - MIR SINE MIR -3 259 168 2851 139 30 4 chr6 68190662 68190820 -114224422 + L1PB3 LINE L1 5665 5818 -336 2164 112 3 0 chr6 68190820 68191136 -114224106 + AluSp SINE Alu 1 317 0 2851 139 30 4 chr6 68191136 68191451 -114223791 + L1PB3 LINE L1 5818 6151 -3 260 216 98 29 chr6 68191562 68191664 -114223578 - L2 LINE L2 -47 3266 3158 2101 121 0 12 chr6 68191778 68192110 -114223132 + L1PA13 LINE L1 5833 6160 -3 219 36 0 0 chr6 68192460 68192488 -114222754 + (CAA)n Simple_repeat Simple_repeat 2 29 0 329 261 43 35 chr6 68193739 68193854 -114221388 + MIR SINE MIR 18 133 -75 25 31 0 0 chr6 68194022 68194054 -114221188 + AT_rich Low_complexity Low_complexity 1 32 0 294 29 0 0 chr6 68194074 68194109 -114221133 + (TA)n Simple_repeat Simple_repeat 2 36 0 1237 171 8 25 chr6 68194729 68194968 -114220274 - MER46A DNA MER2_type -1 235 1 268 235 15 0 chr6 68195212 68195280 -114219962 - MIR SINE MIR -3 259 191 2340 106 3 0 chr6 68195311 68195622 -114219620 - AluSx SINE Alu 0 312 1 445 313 33 28 chr6 68195622 68195804 -114219438 - MIR SINE MIR -62 200 18 188 303 71 50 chr6 68196389 68196488 -114218754 + MIR SINE MIR 48 148 -114 267 325 123 13 chr6 68197037 68197191 -114218051 + MIR3 SINE MIR 33 203 -5 496 291 0 33 chr6 68197253 68197404 -114217838 - L2 LINE L2 -7 3306 3161 2579 58 0 0 chr6 68197422 68197733 -114217509 + AluY SINE Alu 1 311 0 308 237 336 0 chr6 68197828 68197959 -114217283 + MIR SINE MIR 75 249 -13 413 276 92 6 chr6 68197977 68198140 -114217102 - MIR SINE MIR -12 250 74 841 202 15 9 chr6 68198641 68198818 -114216424 + L1PA16 LINE L1 5903 6080 -74 21 0 0 0 chr6 68199495 68199516 -114215726 + AT_rich Low_complexity Low_complexity 1 21 0 1621 246 111 30 chr6 68199708 68200232 -114215010 + MLT1F1 LTR MaLR 2 567 0 24 0 0 0 chr6 68200372 68200396 -114214846 + AT_rich Low_complexity Low_complexity 1 24 0 2182 87 0 11 chr6 68200396 68200682 -114214560 - AluY SINE Alu -28 283 1 2078 91 4 4 chr6 68201211 68201476 -114213766 - AluSq SINE Alu -26 287 23 5165 65 1 1 chr6 68201476 68202135 -114213107 + L1PA7 LINE L1 5496 6154 0 243 218 0 0 chr6 68202220 68202275 -114212967 + (CA)n Simple_repeat Simple_repeat 2 56 0 200 152 43 0 chr6 68202294 68202340 -114212902 + (TATG)n Simple_repeat Simple_repeat 2 49 0 332 265 49 27 chr6 68202365 68202550 -114212692 - L1M4 LINE L1 -1391 4755 4567 2267 107 0 0 chr6 68202586 68202884 -114212358 + AluSx SINE Alu 1 298 -14 225 0 0 0 chr6 68203028 68203053 -114212189 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 68203185 68203207 -114212035 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr6 68203271 68203296 -114211946 + AT_rich Low_complexity Low_complexity 1 25 0 1857 184 105 89 chr6 68203633 68204187 -114211055 + LTR49 LTR ERV1 1 590 -5 758 124 0 0 chr6 68204194 68204299 -114210943 + LTR49-int LTR ERV1 1 105 -6226 3182 91 5 7 chr6 68204301 68204750 -114210492 - LTR7 LTR ERV1 -2 448 1 2257 109 50 13 chr6 68204750 68205126 -114210116 - HERVH LTR ERV1 0 7713 7324 1253 140 17 64 chr6 68205120 68205356 -114209886 - HERVH LTR ERV1 -1889 5824 5600 * 7792 123 7 13 chr6 68205357 68207075 -114208167 - HERVH LTR ERV1 -1866 5225 3504 * 14633 112 3 25 chr6 68207072 68209353 -114205889 - HERVH LTR ERV1 -4728 2985 756 2486 181 33 29 chr6 68209341 68209937 -114205305 - HERVH LTR ERV1 -7153 560 1 * 3124 93 5 7 chr6 68209939 68210388 -114204854 - LTR7 LTR ERV1 -2 448 1 2972 224 49 26 chr6 68210388 68210443 -114204799 + LTR49-int LTR ERV1 101 153 -6178 180 0 0 0 chr6 68210443 68210463 -114204779 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2972 224 49 26 chr6 68210463 68211134 -114204108 + LTR49-int LTR ERV1 153 844 -5487 1987 112 0 14 chr6 68211367 68211654 -114203588 + AluSg SINE Alu 28 310 0 255 61 0 0 chr6 68211715 68211748 -114203494 + (A)n Simple_repeat Simple_repeat 1 33 0 688 221 41 112 chr6 68212608 68212799 -114202443 + LTR49-int LTR ERV1 364 426 -4510 357 24 0 0 chr6 68212799 68212841 -114202401 + (TA)n Simple_repeat Simple_repeat 1 42 0 688 221 41 112 chr6 68212841 68213014 -114202228 + LTR49-int LTR ERV1 426 610 -4326 477 254 46 15 chr6 68213062 68213192 -114202050 + LTR49-int LTR ERV1 1908 2041 -4290 663 253 124 35 chr6 68213324 68213581 -114201661 + MER34C LTR ERV1 160 439 -146 2205 120 0 0 chr6 68213624 68213916 -114201326 + AluSc SINE Alu 1 292 -17 23 0 0 0 chr6 68213916 68213939 -114201303 + AT_rich Low_complexity Low_complexity 1 23 0 292 233 17 0 chr6 68213943 68214003 -114201239 + LTR49-int LTR ERV1 1897 1957 -4641 298 200 0 70 chr6 68214011 68214111 -114201131 + LTR49-int LTR ERV1 1302 1394 -3729 654 195 43 71 chr6 68214143 68214353 -114200889 + LTR49-int LTR ERV1 3069 3272 -3059 408 169 0 0 chr6 68214405 68214476 -114200766 + LTR49-int LTR ERV1 3264 3334 -2997 405 120 43 43 chr6 68214660 68214752 -114200490 + LTR49-int LTR ERV1 1838 1929 -3194 425 225 82 50 chr6 68214826 68215115 -114200127 + LTR49-int LTR ERV1 1951 2908 -1972 835 180 7 0 chr6 68215230 68215380 -114199862 - L1M1 LINE L1 -538 5767 5617 10133 174 71 54 chr6 68215413 68217860 -114197382 + LTR49-int LTR ERV1 3828 6315 -16 1827 171 135 72 chr6 68217885 68218355 -114196887 + LTR49 LTR ERV1 3 515 -80 1492 201 6 13 chr6 68218355 68218669 -114196573 - AluJo SINE Alu 0 312 1 1827 171 135 72 chr6 68218669 68218753 -114196489 + LTR49 LTR ERV1 515 592 -3 220 402 0 0 chr6 68219747 68219829 -114195413 + MIR SINE MIR 12 93 -169 201 74 0 0 chr6 68221316 68221343 -114193899 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 3002 91 2 21 chr6 68221343 68221773 -114193469 - L1PA8 LINE L1 -24 6148 5727 1437 184 4 36 chr6 68221773 68222050 -114193192 - AluJb SINE Alu -21 291 24 206 339 0 0 chr6 68222517 68222576 -114192666 + L2 LINE L2 3254 3312 -1 625 317 45 45 chr6 68223633 68224053 -114191189 - MLT1K LTR MaLR -2 586 167 546 301 72 38 chr6 68224361 68224623 -114190619 - MLT1K LTR MaLR -2 586 316 323 337 21 0 chr6 68225015 68225110 -114190132 - MIR3 SINE MIR -27 181 85 3452 250 54 20 chr6 68225960 68227115 -114188127 + L1ME2 LINE L1 3722 4915 -1231 1258 229 70 19 chr6 68227113 68227484 -114187758 + L1ME2 LINE L1 5669 6058 -106 * 319 283 73 93 chr6 68227912 68228395 -114186847 - L1M4 LINE L1 -2467 3679 3209 378 195 47 35 chr6 68228898 68229067 -114186175 + (TTATA)n Simple_repeat Simple_repeat 2 172 0 3909 101 65 86 chr6 68229652 68230354 -114184888 - LTR12 LTR ERV1 0 688 1 2200 100 3 0 chr6 68230508 68230798 -114184444 - AluSp SINE Alu -22 291 1 277 111 0 0 chr6 68232341 68232386 -114182856 - MADE1 DNA Mariner 0 80 36 396 265 73 0 chr6 68233528 68233664 -114181578 + L1MEc LINE L1 45 190 -6206 339 196 11 11 chr6 68233686 68233778 -114181464 + L1 LINE L1 2910 3001 -3145 236 306 41 0 chr6 68233831 68233929 -114181313 + L1MA10 LINE L1 6226 6327 -7 2090 183 56 0 chr6 68234006 68234453 -114180789 + L1 LINE L1 4145 4616 -1530 180 0 0 0 chr6 68234464 68234484 -114180758 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6006 126 13 1 chr6 68234484 68235648 -114179594 - L1PB2 LINE L1 -23 6844 5665 1759 158 7 13 chr6 68235648 68235946 -114179296 - AluSq SINE Alu -13 300 5 15855 178 56 5 chr6 68236464 68236755 -114178487 - L1PB2 LINE L1 -1183 5679 5404 2209 129 3 0 chr6 68236755 68237066 -114178176 - AluSp SINE Alu -1 312 1 15855 178 56 5 chr6 68237066 68242174 -114173068 - L1PB2 LINE L1 -1458 5404 3 2150 201 9 2 chr6 68242187 68242644 -114172598 + L1 LINE L1 4605 5064 -1082 382 328 8 8 chr6 68242773 68242904 -114172338 + GA-rich Low_complexity Low_complexity 2 132 0 1289 196 14 29 chr6 68242907 68243182 -114172060 - AluJo SINE Alu -4 308 38 2424 180 52 22 chr6 68243213 68243712 -114171530 + MER67D LTR ERV1 1 514 0 706 141 0 74 chr6 68243876 68244011 -114171231 + LTR8 LTR ERV1 2 126 -565 5338 147 21 51 chr6 68244045 68244532 -114170710 - L1MA4 LINE L1 -16 6284 5784 324 70 0 0 chr6 68244532 68244575 -114170667 + (CA)n Simple_repeat Simple_repeat 1 43 0 5338 147 21 51 chr6 68244575 68245764 -114169478 - L1MA4 LINE L1 -516 5784 4663 3045 216 33 4 chr6 68247468 68248158 -114167084 - MER67C LTR ERV1 0 710 1 13954 177 26 18 chr6 68248795 68251998 -114163244 + L1PA15 LINE L1 1188 4429 -3136 1590 199 14 7 chr6 68251998 68252294 -114162948 - AluJb SINE Alu -14 298 1 13954 177 26 18 chr6 68252294 68253045 -114162197 + L1PA15 LINE L1 4429 5173 -2392 2629 213 16 102 chr6 68253422 68254240 -114161002 + Charlie1a DNA MER1_type 1 748 -707 13176 230 19 12 chr6 68254256 68258504 -114156738 + L1PA13 LINE L1 955 5249 -1548 585 205 8 0 chr6 68258517 68258634 -114156608 + L1PA15 LINE L1 5671 5788 -1777 5174 120 23 36 chr6 68258635 68259504 -114155738 + L1PA15 LINE L1 5998 6850 -734 1751 165 7 7 chr6 68259504 68259807 -114155435 + AluSx SINE Alu 5 307 -5 5174 120 23 36 chr6 68259807 68260529 -114154713 + L1PA15 LINE L1 6850 7580 -4 1606 181 142 95 chr6 68260598 68261274 -114153968 + Charlie1a DNA MER1_type 741 1448 -7 306 260 10 60 chr6 68261625 68261725 -114153517 + MER63A DNA MER1_type 112 206 -4 532 218 218 0 chr6 68262056 68262189 -114153053 + MER5A DNA MER1_type 4 165 -24 198 220 34 0 chr6 68262152 68262211 -114153031 - MER5B DNA MER1_type -117 61 1 * 362 368 47 6 chr6 68262799 68262970 -114152272 - MER5B DNA MER1_type 0 178 1 4884 149 41 7 chr6 68263340 68264177 -114151065 + MER6 DNA MER2_type 1 865 0 22 35 0 0 chr6 68264293 68264322 -114150920 + AT_rich Low_complexity Low_complexity 1 29 0 1143 192 46 87 chr6 68264523 68264913 -114150329 - MLT1A2 LTR MaLR 0 374 1 243 0 0 0 chr6 68265045 68265072 -114150170 + (CA)n Simple_repeat Simple_repeat 2 28 0 843 170 0 0 chr6 68265269 68265410 -114149832 - FLAM_C SINE Alu -2 141 1 3237 43 0 0 chr6 68265485 68265882 -114149360 - L1PA4 LINE L1 -5 6150 5754 23 54 0 0 chr6 68266300 68266337 -114148905 + AT_rich Low_complexity Low_complexity 1 37 0 5859 148 23 12 chr6 68266337 68267587 -114147655 - L1MA3 LINE L1 -24 6281 5016 186 213 33 66 chr6 68268259 68268320 -114146922 - MIR SINE MIR -46 216 158 264 279 91 82 chr6 68268393 68268612 -114146630 + MLT1J LTR MaLR 99 319 -192 328 180 18 126 chr6 68269538 68269649 -114145593 - MER112 DNA MER1_type -40 220 122 258 230 14 54 chr6 68269673 68269731 -114145511 - L2 LINE L2 0 3313 3254 420 20 0 0 chr6 68269731 68269780 -114145462 + (TA)n Simple_repeat Simple_repeat 1 49 0 351 0 0 0 chr6 68269779 68269818 -114145424 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 258 230 14 54 chr6 68269780 68269833 -114145409 - L2 LINE L2 -59 3254 3243 773 343 18 7 chr6 68269919 68270193 -114145049 + MLT1I LTR MaLR 59 335 -74 29229 124 17 57 chr6 68272676 68279073 -114136169 - L1PA7 LINE L1 -15 6139 12 5671 121 0 5 chr6 68279094 68280273 -114134969 - L1PA13 LINE L1 -14 6149 4969 2072 177 43 27 chr6 68280273 68280806 -114134436 + MLT2A2 LTR ERVL 2 554 0 2564 172 4 8 chr6 68280810 68281287 -114133955 - L1PA13 LINE L1 -1176 4970 4496 325 321 115 34 chr6 68281787 68281996 -114133246 - MIR SINE MIR -12 250 25 733 287 52 0 chr6 68282014 68282265 -114132977 - L2 LINE L2 -1283 2031 1768 1252 208 168 28 chr6 68282265 68282669 -114132573 - MER34B LTR ERV1 0 565 102 2314 137 315 4 chr6 68282669 68283167 -114132075 - MER39B LTR ERV1 0 653 1 364 189 74 53 chr6 68283167 68283280 -114131962 - MER34C LTR ERV1 -449 136 12 566 317 97 36 chr6 68283281 68283672 -114131570 - L2 LINE L2 -1549 1765 1351 421 255 10 0 chr6 68284438 68284540 -114130702 - MIR SINE MIR -50 212 110 1082 220 31 88 chr6 68284791 68285178 -114130064 + MLT1B LTR MaLR 1 365 -25 30292 48 11 2 chr6 68285178 68289834 -114125408 - L1PA4 LINE L1 -4 6151 1457 1277 132 9 2 chr6 68289834 68291570 -114123672 - ALR/Alpha Satellite centromeric 0 1749 1 1219 136 6 3 chr6 68291581 68297751 -114117491 - ALR/Alpha Satellite centromeric 0 6186 1 1083 146 2 0 chr6 68297762 68298078 -114117164 - ALR/Alpha Satellite centromeric 0 316 1 1102 157 4 2 chr6 68298098 68299199 -114116043 - ALR/Alpha Satellite centromeric 0 1103 1 1259 130 5 1 chr6 68299213 68303682 -114111560 + ALR/Alpha Satellite centromeric 1 4486 -6 1184 136 7 3 chr6 68303694 68312669 -114102573 + ALR/Alpha Satellite centromeric 1 9007 -21 2393 90 0 0 chr6 68312669 68312980 -114102262 + HERVK9 LTR ERVK 5324 5634 -282 2044 93 7 0 chr6 68313075 68313355 -114101887 + HERVK9 LTR ERVK 5635 5916 0 2961 161 8 8 chr6 68313356 68313864 -114101378 + MER9 LTR ERVK 2 509 -2 1195 135 7 5 chr6 68313866 68315786 -114099456 + ALR/Alpha Satellite centromeric 1 1924 -11 1196 142 4 0 chr6 68315800 68322513 -114092729 + ALR/Alpha Satellite centromeric 1 6738 0 1151 128 1 0 chr6 68322537 68323135 -114092107 + ALR/Alpha Satellite centromeric 1 598 -3 1189 136 6 5 chr6 68323147 68326554 -114088688 + ALR/Alpha Satellite centromeric 1 3412 -4 1214 141 2 0 chr6 68326565 68329626 -114085616 + ALR/Alpha Satellite centromeric 1 3067 -14 1797 90 4 0 chr6 68329637 68329892 -114085350 - LTR13 LTR ERVK -751 256 1 1279 122 7 4 chr6 68329888 68330586 -114084656 - ALR/Alpha Satellite centromeric 0 3717 3022 * 6997 107 13 1 chr6 68330586 68331579 -114083663 - LTR13 LTR ERVK -2 1005 1 1279 122 7 4 chr6 68331579 68333597 -114081645 - ALR/Alpha Satellite centromeric -695 3022 1 6979 42 2 0 chr6 68333598 68334445 -114080797 - L1PA4 LINE L1 -8 6147 5299 1217 136 4 3 chr6 68334445 68338055 -114077187 - ALR/Alpha Satellite centromeric 0 3612 1 1266 140 2 1 chr6 68338069 68341888 -114073354 - ALR/Alpha Satellite centromeric 0 3822 1 945 237 41 7 chr6 68341993 68342263 -114072979 - L1M4 LINE L1 -1286 5671 5393 1546 154 15 8 chr6 68342282 68342549 -114072693 - Tigger2 DNA MER2_type -11 2707 2439 2931 177 59 2 chr6 68342599 68343157 -114072085 - Tigger2 DNA MER2_type -1974 744 155 2108 243 45 42 chr6 68343168 68343543 -114071699 - L1M4 LINE L1 -2163 4794 4422 16253 40 1 1 chr6 68343543 68346302 -114068940 - L1PA4 LINE L1 0 6155 3396 2108 243 45 42 chr6 68346302 68346893 -114068349 - L1M4 LINE L1 -2535 4422 3825 625 303 71 28 chr6 68346889 68347212 -114068030 - L1M4 LINE L1 -5916 943 607 * 630 206 19 50 chr6 68347306 68347509 -114067733 + MLT1E1 LTR MaLR 325 627 -27 396 278 53 25 chr6 68347509 68347726 -114067516 + MER87 LTR ERV1 319 544 -12 255 313 8 16 chr6 68347942 68348070 -114067172 - L1MEd LINE L1 -4975 1144 1018 1687 200 58 0 chr6 68348320 68348665 -114066577 + MLT1A1 LTR MaLR 1 365 0 207 69 0 0 chr6 68349090 68349119 -114066123 + (TC)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 68349787 68349808 -114065434 + AT_rich Low_complexity Low_complexity 1 21 0 1584 202 0 14 chr6 68349976 68350268 -114064974 + AluJo SINE Alu 13 300 -12 1105 224 27 38 chr6 68350447 68350710 -114064532 + MER76 LTR ERV 1 260 -428 455 294 98 19 chr6 68350759 68350973 -114064269 + MER76 LTR ERV 424 654 -34 23 0 0 0 chr6 68351756 68351779 -114063463 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr6 68352631 68352660 -114062582 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr6 68353227 68353281 -114061961 + AT_rich Low_complexity Low_complexity 1 54 0 296 341 56 28 chr6 68353404 68353583 -114061659 - MIR SINE MIR -4 258 75 1131 306 83 21 chr6 68353837 68354320 -114060922 + LTR33 LTR ERVL 1 513 -8 22 0 0 0 chr6 68355055 68355077 -114060165 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr6 68355515 68355552 -114059690 + (TG)n Simple_repeat Simple_repeat 1 37 0 2270 204 102 62 chr6 68356186 68356980 -114058262 + LTR1B LTR ERV1 1 826 0 180 111 0 0 chr6 68358953 68358980 -114056262 + (TTAGGG)n Simple_repeat Simple_repeat 4 30 0 241 145 24 84 chr6 68360646 68360729 -114054513 + A-rich Low_complexity Low_complexity 6 83 0 12199 108 7 47 chr6 68360805 68362897 -114052345 - L1P3 LINE L1 -4397 2064 8 31 26 0 0 chr6 68363773 68363811 -114051431 + AT_rich Low_complexity Low_complexity 1 38 0 268 313 236 19 chr6 68364920 68365128 -114050114 + MIR SINE MIR 8 260 -2 21 0 0 0 chr6 68366437 68366458 -114048784 + AT_rich Low_complexity Low_complexity 1 21 0 5359 152 16 32 chr6 68366558 68367070 -114048172 - L1MA6 LINE L1 -1 7718 7199 333 0 0 0 chr6 68367070 68367107 -114048135 + (TG)n Simple_repeat Simple_repeat 2 38 0 5359 152 16 32 chr6 68367107 68368356 -114046886 - L1MA6 LINE L1 -520 7199 5992 638 154 0 8 chr6 68368374 68368504 -114046738 + L1 LINE L1 4353 4481 -1665 1365 178 77 115 chr6 68368505 68368854 -114046388 + Tigger3(Golem) DNA MER2_type 13 3028 -1 8634 226 32 29 chr6 68368854 68372504 -114042738 - L1MA6 LINE L1 -1917 5648 1990 332 350 19 0 chr6 68372761 68372918 -114042324 - L1MA6 LINE L1 -6649 840 681 6668 148 17 1 chr6 68373007 68374090 -114041152 + Tigger1 DNA MER2_type 1318 2417 -1 940 307 153 0 chr6 68374554 68374965 -114040277 - L2 LINE L2 -498 2816 2343 583 140 10 20 chr6 68375466 68375566 -114039676 - THE1B LTR MaLR 0 364 266 * 2306 230 132 116 chr6 68375555 68376990 -114038252 - MER52A LTR ERV1 -298 1457 1 605 259 64 32 chr6 68377033 68377346 -114037896 + L1MEc LINE L1 1569 1891 -4505 * 2094 268 64 25 chr6 68377337 68377507 -114037735 + L1MEc LINE L1 2643 2805 -3410 1086 23 0 0 chr6 68377507 68377635 -114037607 - L1PA2 LINE L1 -2 6153 6026 2094 268 64 25 chr6 68377635 68378526 -114036716 + L1MEc LINE L1 2805 3746 -2469 9041 37 0 1 chr6 68378598 68379732 -114035510 - L1PA2 LINE L1 -2602 3544 2412 15019 34 0 2 chr6 68379732 68382324 -114032918 + L1PA2 LINE L1 3548 6155 0 324 304 89 0 chr6 68383197 68383309 -114031933 - L2 LINE L2 0 3313 3192 21 89 0 0 chr6 68383520 68383576 -114031666 + AT_rich Low_complexity Low_complexity 1 56 0 2992 223 81 12 chr6 68384094 68385586 -114029656 - L1MB7 LINE L1 -10 6174 4582 847 161 15 0 chr6 68385605 68385735 -114029507 - Tigger2 DNA MER2_type -11 2707 2576 30 27 0 0 chr6 68386083 68386120 -114029122 + AT_rich Low_complexity Low_complexity 1 37 0 288 0 0 0 chr6 68386365 68386397 -114028845 + (T)n Simple_repeat Simple_repeat 1 32 0 262 369 127 26 chr6 68386501 68386967 -114028275 - L2 LINE L2 -649 2665 2153 318 26 0 0 chr6 68387754 68387793 -114027449 + (TC)n Simple_repeat Simple_repeat 2 40 0 8747 40 0 0 chr6 68388106 68389187 -114026055 - L1PA2 LINE L1 -3766 2380 1300 24840 30 0 2 chr6 68389187 68392961 -114022281 + L1PA2 LINE L1 2385 6155 0 324 304 89 0 chr6 68393834 68393946 -114021296 - L2 LINE L2 0 3313 3192 21 89 0 0 chr6 68394157 68394213 -114021029 + AT_rich Low_complexity Low_complexity 1 56 0 2992 223 81 12 chr6 68394731 68396223 -114019019 - L1MB7 LINE L1 -10 6985 5393 1562 154 15 8 chr6 68396242 68396509 -114018733 - Tigger2 DNA MER2_type -11 2707 2439 2964 177 59 2 chr6 68396559 68397117 -114018125 - Tigger2 DNA MER2_type -1974 744 155 2185 242 45 43 chr6 68397128 68397503 -114017739 - L1MB7 LINE L1 -2163 4794 4421 16234 40 1 1 chr6 68397503 68400262 -114014980 - L1PA4 LINE L1 0 6155 3396 2185 242 45 43 chr6 68400262 68400854 -114014388 - L1MB7 LINE L1 -2536 4421 3825 633 322 65 22 chr6 68400850 68401173 -114014069 - L1MB7 LINE L1 -5916 943 607 * 628 211 16 48 chr6 68401267 68401470 -114013772 + MLT1E1 LTR MaLR 350 627 -27 395 278 53 25 chr6 68401470 68401687 -114013555 + MER87 LTR ERV1 319 544 -12 269 313 8 16 chr6 68401903 68402031 -114013211 - L1MEd LINE L1 -4975 1144 1018 1674 200 58 0 chr6 68402281 68402626 -114012616 + MLT1A1 LTR MaLR 1 365 0 207 69 0 0 chr6 68403051 68403080 -114012162 + (TC)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 68403748 68403769 -114011473 + AT_rich Low_complexity Low_complexity 1 21 0 1570 202 0 14 chr6 68403937 68404229 -114011013 + AluJo SINE Alu 13 300 -12 1093 224 27 38 chr6 68404408 68404671 -114010571 + MER76 LTR ERV 1 260 -428 446 294 98 19 chr6 68404720 68404934 -114010308 + MER76 LTR ERV 424 654 -34 23 0 0 0 chr6 68405717 68405740 -114009502 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr6 68406592 68406621 -114008621 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr6 68407188 68407242 -114008000 + AT_rich Low_complexity Low_complexity 1 54 0 307 341 56 28 chr6 68407365 68407544 -114007698 - MIR SINE MIR -4 258 75 1122 306 83 21 chr6 68407798 68408281 -114006961 + LTR33 LTR ERVL 1 513 -8 22 0 0 0 chr6 68409016 68409038 -114006204 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr6 68409476 68409513 -114005729 + (TG)n Simple_repeat Simple_repeat 1 37 0 2186 204 102 62 chr6 68410147 68410941 -114004301 + LTR1B LTR ERV1 1 826 0 201 74 0 0 chr6 68412914 68412941 -114002301 + (TTAGGG)n Simple_repeat Simple_repeat 4 30 0 241 145 24 84 chr6 68414607 68414690 -114000552 + A-rich Low_complexity Low_complexity 6 83 0 12053 108 7 47 chr6 68414766 68416858 -113998384 - L1P3 LINE L1 -4397 2064 8 31 26 0 0 chr6 68417734 68417772 -113997470 + AT_rich Low_complexity Low_complexity 1 38 0 274 313 236 19 chr6 68418882 68419090 -113996152 + MIR SINE MIR 8 260 -2 21 0 0 0 chr6 68420399 68420420 -113994822 + AT_rich Low_complexity Low_complexity 1 21 0 5359 152 16 32 chr6 68420520 68421032 -113994210 - L1MA6 LINE L1 -1 7718 7199 279 0 0 0 chr6 68421032 68421063 -113994179 + (TG)n Simple_repeat Simple_repeat 2 32 0 5359 152 16 32 chr6 68421063 68422312 -113992930 - L1MA6 LINE L1 -520 7199 5992 653 146 0 8 chr6 68422330 68422460 -113992782 + L1 LINE L1 4353 4481 -1665 1337 178 77 115 chr6 68422461 68422810 -113992432 + Tigger3(Golem) DNA MER2_type 13 3028 -1 8484 223 33 29 chr6 68422810 68426460 -113988782 - L1MA6 LINE L1 -1917 5648 1990 336 350 19 0 chr6 68426717 68426874 -113988368 - L1MA6 LINE L1 -6649 840 681 6660 147 17 1 chr6 68426963 68428046 -113987196 + Tigger1 DNA MER2_type 1318 2417 -1 947 304 153 0 chr6 68428510 68428921 -113986321 - L2 LINE L2 -498 2816 2343 580 130 10 20 chr6 68429422 68429522 -113985720 - THE1C LTR MaLR 0 375 277 * 2471 225 134 118 chr6 68429511 68430946 -113984296 - MER52A LTR ERV1 -298 1457 1 574 259 64 32 chr6 68430989 68431302 -113983940 + L1ME1 LINE L1 1569 1891 -4505 * 1999 267 64 25 chr6 68431293 68431463 -113983779 + L1ME1 LINE L1 2643 2805 -3410 1086 23 0 0 chr6 68431463 68431591 -113983651 - L1PA2 LINE L1 -2 6153 6026 1999 267 64 25 chr6 68431591 68432482 -113982760 + L1ME1 LINE L1 2805 3746 -2469 9031 38 0 1 chr6 68432554 68433688 -113981554 - L1PA3 LINE L1 -2602 3544 2412 15049 34 1 3 chr6 68433688 68436280 -113978962 + L1PA3 LINE L1 3548 6155 0 1131 220 162 43 chr6 68436307 68436862 -113978380 + L1ME1 LINE L1 3861 4481 -1734 223 235 20 20 chr6 68436904 68437002 -113978240 + GA-rich Low_complexity Low_complexity 2 99 0 1097 171 66 29 chr6 68437023 68437297 -113977945 + L1ME1 LINE L1 5036 5319 -896 1715 226 27 94 chr6 68437299 68438024 -113977218 + L1ME1 LINE L1 5507 6181 -50 321 274 110 27 chr6 68437927 68438073 -113977169 + L1MA10 LINE L1 6246 6403 0 * 217 171 24 0 chr6 68438530 68438571 -113976671 - L2 LINE L2 0 3313 3272 244 258 65 0 chr6 68438723 68438785 -113976457 - MER5A DNA MER1_type -1 188 123 1346 203 51 18 chr6 68438797 68439073 -113976169 + AluJo SINE Alu 15 299 -13 635 214 32 0 chr6 68439075 68439201 -113976041 - MER5A DNA MER1_type -56 133 4 2467 114 16 0 chr6 68441027 68441396 -113973846 - THE1C LTR MaLR 0 375 1 234 308 103 8 chr6 68441576 68441693 -113973549 + MIR SINE MIR 79 206 -56 267 273 156 8 chr6 68441793 68441921 -113973321 - MIR SINE MIR 0 262 116 277 272 147 29 chr6 68442535 68442671 -113972571 - MIR SINE MIR -97 165 14 256 264 47 47 chr6 68443047 68443240 -113972002 + L1M4 LINE L1 2848 3040 -3106 1696 158 66 18 chr6 68443291 68443626 -113971616 - L1MA7 LINE L1 -62 6229 5879 5169 167 38 29 chr6 68443650 68444948 -113970294 - L1MA4 LINE L1 -13 6287 4965 2149 125 0 0 chr6 68444948 68445245 -113969997 - AluSx SINE Alu -15 297 1 5169 167 38 29 chr6 68445245 68445666 -113969576 - L1MA4 LINE L1 -1335 4965 4549 1539 219 64 32 chr6 68445715 68446208 -113969034 + MLT2A1 LTR ERVL 32 554 0 26541 108 7 7 chr6 68446208 68449925 -113965317 + HERVL-A1 LTR ERVL 1 3718 -1936 29 28 0 0 chr6 68450026 68450062 -113965180 + AT_rich Low_complexity Low_complexity 1 36 0 4648 62 3 0 chr6 68450083 68450667 -113964575 - L1PA6 LINE L1 -13 6141 5556 341 275 0 0 chr6 68451193 68451273 -113963969 + L2 LINE L2 1876 1955 -1359 306 0 0 0 chr6 68451756 68451790 -113963452 + (CA)n Simple_repeat Simple_repeat 2 35 0 2529 158 22 4 chr6 68451793 68452250 -113962992 - L1P5 LINE L1 -384 5772 5308 * 9450 174 38 6 chr6 68452246 68453839 -113961403 + L1M1 LINE L1 153 1796 -5769 398 293 184 24 chr6 68454788 68455000 -113960242 - L3 LINE CR1 -201 1376 1131 498 250 107 6 chr6 68455317 68455485 -113959757 + MIR SINE MIR 1 185 -77 243 0 0 0 chr6 68455714 68455741 -113959501 + (TC)n Simple_repeat Simple_repeat 2 28 0 795 220 52 0 chr6 68456810 68457001 -113958241 - MER3 DNA MER1_type 0 209 9 468 289 96 6 chr6 68457497 68457663 -113957579 + MIR SINE MIR 4 184 -78 26 101 0 0 chr6 68457701 68457790 -113957452 + AT_rich Low_complexity Low_complexity 1 89 0 2018 157 23 3 chr6 68457790 68458141 -113957101 - MER47A DNA MER2_type -1 365 8 26 74 0 0 chr6 68458163 68458217 -113957025 + AT_rich Low_complexity Low_complexity 1 54 0 300 373 28 14 chr6 68458222 68458364 -113956878 + MER5A DNA MER1_type 46 189 0 726 312 82 40 chr6 68458533 68458982 -113956260 - LTR33 LTR ERVL -44 477 10 768 216 27 22 chr6 68459509 68459694 -113955548 + MER5A DNA MER1_type 3 188 -1 608 175 50 8 chr6 68460122 68460242 -113955000 - MER58A DNA MER1_type -15 209 85 3047 182 36 87 chr6 68460256 68460352 -113954890 + L1MA9 LINE L1 5461 5560 -752 2050 128 48 31 chr6 68460352 68460710 -113954532 + THE1B LTR MaLR 1 364 0 10877 108 27 1 chr6 68460710 68462251 -113952991 + THE1B-int LTR MaLR 1 1580 0 2105 112 56 34 chr6 68462251 68462607 -113952635 + THE1B LTR MaLR 1 364 0 3047 182 36 87 chr6 68462607 68463366 -113951876 + L1MA9 LINE L1 5557 6274 -38 243 297 62 0 chr6 68463392 68463456 -113951786 - MER58A DNA MER1_type -39 68 1 2615 48 0 3 chr6 68464158 68464470 -113950772 - AluY SINE Alu 0 311 1 231 294 10 88 chr6 68464709 68464811 -113950431 - Charlie8 DNA MER1_type -2117 300 207 21 0 0 0 chr6 68466413 68466434 -113948808 + AT_rich Low_complexity Low_complexity 1 21 0 2448 66 0 3 chr6 68466440 68466741 -113948501 + AluY SINE Alu 1 300 -11 238 353 39 0 chr6 68467518 68467620 -113947622 - L2 LINE L2 -597 2717 2612 219 337 69 25 chr6 68467937 68468139 -113947103 - L2 LINE L2 -1230 2084 1874 28 79 0 0 chr6 68469979 68470042 -113945200 + AT_rich Low_complexity Low_complexity 1 63 0 532 323 88 39 chr6 68470617 68470979 -113944263 - L3 LINE CR1 -204 1373 994 182 314 256 21 chr6 68471099 68471485 -113943757 - L3 LINE CR1 -828 749 273 1021 173 38 0 chr6 68472154 68472339 -113942903 + MSTB1 LTR MaLR 241 432 0 21 0 0 0 chr6 68472474 68472495 -113942747 + AT_rich Low_complexity Low_complexity 1 21 0 1647 128 84 4 chr6 68472886 68473159 -113942083 + MER46B DNA MER2_type 1 170 -66 25 0 0 0 chr6 68473810 68473835 -113941407 + AT_rich Low_complexity Low_complexity 1 25 0 2012 153 21 140 chr6 68475655 68476346 -113938896 + MER4A LTR ERV1 1 465 0 375 299 63 58 chr6 68477513 68477720 -113937522 - MIR SINE MIR -24 238 31 265 249 47 136 chr6 68478226 68478395 -113936847 + MIR SINE MIR 1 154 -108 756 279 56 32 chr6 68479056 68479207 -113936035 + MIR SINE MIR 5 166 -96 2253 100 3 0 chr6 68479207 68479517 -113935725 + AluSp SINE Alu 1 311 -2 756 279 56 32 chr6 68479517 68479616 -113935626 + MIR SINE MIR 166 261 -1 21 0 0 0 chr6 68481614 68481635 -113933607 + AT_rich Low_complexity Low_complexity 1 21 0 766 333 85 55 chr6 68482109 68482686 -113932556 - L2 LINE L2 -557 2757 2164 2290 41 0 101 chr6 68483808 68484153 -113931089 - AluY SINE Alu -1 310 1 1681 85 127 15 chr6 68484242 68484502 -113930740 + AluSc SINE Alu 1 289 -20 25 51 0 0 chr6 68484820 68484859 -113930383 + AT_rich Low_complexity Low_complexity 1 39 0 329 308 158 0 chr6 68485078 68485224 -113930018 + MIR SINE MIR 81 249 -13 263 357 89 27 chr6 68485473 68485697 -113929545 - MIR SINE MIR -24 238 1 2461 148 9 32 chr6 68486731 68487170 -113928072 - Tigger2a DNA MER2_type -1 433 5 563 221 20 40 chr6 68487182 68487331 -113927911 - L2 LINE L2 -4 3309 3164 334 339 28 76 chr6 68487345 68487596 -113927646 - L2 LINE L2 -112 3201 2963 525 270 77 95 chr6 68487647 68487932 -113927310 - L2 LINE L2 -478 2836 2557 1639 189 58 9 chr6 68487975 68488319 -113926923 - L1MB3 LINE L1 -7 6176 5816 660 146 32 0 chr6 68488333 68488456 -113926786 - L1M4c LINE L1 -3885 2499 2373 225 170 38 0 chr6 68488504 68488557 -113926685 + A-rich Low_complexity Low_complexity 5 59 0 878 173 4 113 chr6 68488564 68488795 -113926447 - MER2 DNA MER2_type -138 207 2 5119 135 41 6 chr6 68488795 68489682 -113925560 - L1M4c LINE L1 -4008 2376 1459 1301 203 0 4 chr6 68489681 68489917 -113925325 - L1M4c LINE L1 -6134 250 16 * 863 306 142 6 chr6 68489919 68490406 -113924836 - L2 LINE L2 -769 2545 1993 457 330 34 56 chr6 68490436 68490703 -113924539 + L3 LINE CR1 1296 1556 -21 204 420 0 11 chr6 68490877 68490965 -113924277 + MIR SINE MIR 45 131 -77 237 280 119 25 chr6 68491420 68491538 -113923704 + MIR SINE MIR 134 262 0 282 330 102 30 chr6 68491833 68492097 -113923145 - L1MC/D LINE L1 -2143 5665 5383 23 33 0 0 chr6 68492282 68492312 -113922930 + AT_rich Low_complexity Low_complexity 1 30 0 330 26 0 0 chr6 68492410 68492449 -113922793 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 233 178 68 0 chr6 68492810 68492883 -113922359 - L1MB4 LINE L1 0 6180 6103 512 259 43 0 chr6 68492886 68493002 -113922240 - FLAM_A SINE Alu -12 121 1 2101 184 31 38 chr6 68493002 68493452 -113921790 - L1MB4 LINE L1 -38 6142 5696 237 65 0 0 chr6 68494074 68494105 -113921137 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1220 309 52 6 chr6 68495667 68496152 -113919090 - HsTC2 DNA Tc2 -1391 507 1 317 344 0 0 chr6 68496204 68496294 -113918948 + L1MC4 LINE L1 6614 6703 -1339 * 346 315 0 0 chr6 68496214 68496303 -113918939 - L1MC4 LINE L1 -1339 6703 6615 225 267 0 22 chr6 68496319 68496409 -113918833 + L1MC4 LINE L1 6615 6702 -1340 * 237 172 0 62 chr6 68496390 68496454 -113918788 - L1MC4 LINE L1 -1339 6703 6644 329 146 0 0 chr6 68496459 68496507 -113918735 - MER66B LTR ERV1 -141 345 298 494 298 54 56 chr6 68496611 68497020 -113918222 + L1PA12 LINE L1 7 414 -7167 303 342 26 7 chr6 68497645 68497800 -113917442 + L1PA12 LINE L1 2165 2322 -5259 * 11395 216 43 16 chr6 68497799 68501554 -113913688 + L1PA13 LINE L1 1253 5116 -1681 23 0 0 0 chr6 68501554 68501577 -113913665 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr6 68501598 68501621 -113913621 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr6 68501689 68501721 -113913521 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr6 68502001 68502031 -113913211 + AT_rich Low_complexity Low_complexity 1 30 0 324 261 99 27 chr6 68502691 68502802 -113912440 + MIR3 SINE MIR 84 202 -6 21 57 0 0 chr6 68504269 68504304 -113910938 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 68504751 68504772 -113910470 + AT_rich Low_complexity Low_complexity 1 21 0 371 313 132 43 chr6 68505368 68505774 -113909468 - L2 LINE L2 -273 3040 2589 466 108 0 0 chr6 68507189 68507254 -113907988 - L1PA4 LINE L1 -297 5858 5794 384 71 0 0 chr6 68507247 68507303 -113907939 + L1PA8A LINE L1 5861 5916 -215 * 6123 200 22 8 chr6 68507306 68508844 -113906398 + L1MA10 LINE L1 4069 5626 -542 1303 203 3 68 chr6 68508845 68509166 -113906076 + MLT1A1 LTR MaLR 1 300 -65 972 196 0 92 chr6 68509176 68509405 -113905837 + MLT1A1 LTR MaLR 156 363 -2 1791 201 18 10 chr6 68509418 68509815 -113905427 + L1MA10 LINE L1 5922 6321 -13 183 100 0 0 chr6 68509833 68509863 -113905379 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 204 329 41 0 chr6 68511574 68511647 -113903595 - MIR SINE MIR -78 184 109 287 300 171 29 chr6 68512145 68512285 -113902957 + MIR SINE MIR 27 186 -76 207 270 0 32 chr6 68513110 68513173 -113902069 + MIR SINE MIR 71 131 -77 187 242 32 48 chr6 68513240 68513302 -113901940 + MIR SINE MIR 40 100 -162 409 293 100 20 chr6 68513388 68513538 -113901704 + MIR SINE MIR 100 261 -1 252 330 18 9 chr6 68514311 68514420 -113900822 - MIR SINE MIR -33 229 120 482 264 94 13 chr6 68514521 68514680 -113900562 - L2 LINE L2 0 3313 3142 626 204 34 17 chr6 68514686 68514862 -113900380 - L1MA10 LINE L1 -1 6333 6155 1708 166 47 19 chr6 68514909 68515005 -113900237 - L1MB1 LINE L1 -28 6161 6069 2372 159 26 0 chr6 68515005 68515420 -113899822 - MSTB LTR MaLR 0 426 1 1708 166 47 19 chr6 68515420 68515643 -113899599 - L1MB1 LINE L1 -120 6069 5833 500 361 42 11 chr6 68515645 68515930 -113899312 - L2 LINE L2 -177 3136 2843 1086 248 71 121 chr6 68515938 68516009 -113899233 + MLT1F1 LTR MaLR 144 217 -350 2058 134 0 10 chr6 68516009 68516322 -113898920 + AluSx SINE Alu 1 310 -2 1086 248 71 121 chr6 68516322 68516689 -113898553 + MLT1F1 LTR MaLR 217 560 -7 1539 315 126 8 chr6 68516769 68517530 -113897712 - L2 LINE L2 -662 2652 1802 186 353 96 58 chr6 68517758 68518237 -113897005 + L2 LINE L2 2239 2735 -579 194 186 93 0 chr6 68518273 68518316 -113896926 + L2 LINE L2 3267 3313 0 249 337 74 32 chr6 68518674 68518769 -113896473 + L2 LINE L2 3126 3224 -48 239 200 0 13 chr6 68520298 68520373 -113894869 + (TA)n Simple_repeat Simple_repeat 2 75 0 3774 233 27 33 chr6 68520809 68521654 -113893588 - L1M4 LINE L1 -585 5599 4763 1940 142 3 22 chr6 68521654 68521972 -113893270 - AluSx SINE Alu 0 312 1 3774 233 27 33 chr6 68521972 68522505 -113892737 - L1M4 LINE L1 -1421 4763 4229 21 0 0 0 chr6 68522607 68522628 -113892614 + AT_rich Low_complexity Low_complexity 1 21 0 358 368 26 21 chr6 68523049 68523242 -113892000 + L3 LINE CR1 1360 1553 -24 638 262 7 0 chr6 68523326 68523475 -113891767 - Zaphod DNA AcHobo -1 4030 3881 284 425 81 0 chr6 68523603 68523763 -113891479 - MER115 DNA AcHobo -270 423 251 * 695 350 46 35 chr6 68523758 68524126 -113891116 - MER115 DNA AcHobo -320 373 2 22455 44 6 0 chr6 68524812 68528407 -113886835 + L1PA4 LINE L1 2549 6153 -2 28 48 0 0 chr6 68528924 68528966 -113886276 + AT_rich Low_complexity Low_complexity 1 42 0 233 286 0 16 chr6 68529693 68529756 -113885486 - L2 LINE L2 -54 3259 3198 189 415 46 7 chr6 68529942 68530094 -113885148 - L2 LINE L2 -206 3066 2909 309 240 110 55 chr6 68530097 68530243 -113884999 + L2 LINE L2 3154 3307 -6 * 394 283 139 77 chr6 68530238 68530807 -113884435 - L2 LINE L2 -420 2894 2291 2057 168 56 5 chr6 68530963 68531374 -113883868 + MSTB1 LTR MaLR 1 432 0 1180 180 31 4 chr6 68531558 68531786 -113883456 - MER46A DNA MER2_type 0 236 3 328 280 0 0 chr6 68531807 68531882 -113883360 + LTR40a LTR ERVL 26 100 -419 815 236 44 11 chr6 68531914 68532096 -113883146 + MER8 DNA MER2_type 50 237 -2 1531 279 22 5 chr6 68532098 68532511 -113882731 + LTR40a LTR ERVL 100 519 0 1376 248 64 16 chr6 68534936 68535372 -113879870 - L1MA9 LINE L1 -25 6287 5831 920 177 12 0 chr6 68535383 68535547 -113879695 - FAM SINE Alu -10 175 10 2576 184 6 4 chr6 68535591 68536075 -113879167 - L1MA9 LINE L1 -506 5806 5322 1289 204 7 4 chr6 68536072 68536342 -113878900 + L1MA9 LINE L1 5049 5319 -827 * 1906 187 53 28 chr6 68536699 68537239 -113878003 + MLT2A2 LTR ERVL 1 554 0 2099 105 0 3 chr6 68537464 68537750 -113877492 - AluSx SINE Alu -7 305 21 305 91 0 0 chr6 68538757 68538801 -113876441 - L1PA13 LINE L1 -11 6152 6109 3253 100 7 0 chr6 68538806 68539257 -113875985 + L1PA13 LINE L1 5499 5952 -211 207 69 0 0 chr6 68539461 68539490 -113875752 + (GA)n Simple_repeat Simple_repeat 2 30 0 2060 170 65 46 chr6 68539559 68540017 -113875225 + MLT1C LTR MaLR 1 467 0 2182 70 0 0 chr6 68540775 68541047 -113874195 + AluY SINE Alu 40 311 0 303 252 37 9 chr6 68541628 68541735 -113873507 + L1ME LINE L1 67 176 -5943 508 272 37 19 chr6 68541735 68541897 -113873345 - MLT1J2 LTR MaLR -285 165 1 22 70 0 0 chr6 68542724 68542767 -113872475 + AT_rich Low_complexity Low_complexity 1 43 0 212 184 0 0 chr6 68543835 68543873 -113871369 + T-rich Low_complexity Low_complexity 1 38 0 456 288 83 31 chr6 68545746 68545809 -113869433 + L1ME LINE L1 898 956 -5163 2399 201 43 2 chr6 68545809 68546321 -113868921 + L1PB4 LINE L1 5623 6155 -1 456 288 83 31 chr6 68546321 68546680 -113868562 + L1ME LINE L1 956 1249 -4870 486 286 63 0 chr6 68546738 68546927 -113868315 + L1MC4 LINE L1 7686 7886 -156 299 187 10 38 chr6 68546929 68547146 -113868096 + (TA)n Simple_repeat Simple_repeat 1 210 0 339 271 96 68 chr6 68547158 68548042 -113867200 + L1ME LINE L1 1285 2218 -4092 2310 244 35 17 chr6 68548090 68548722 -113866520 + L1MA9 LINE L1 5613 6255 -57 330 294 72 61 chr6 68548785 68549309 -113865933 + L1ME LINE L1 2455 2984 -3145 291 146 0 0 chr6 68549360 68549415 -113865827 + (GA)n Simple_repeat Simple_repeat 1 55 0 2238 114 23 11 chr6 68549433 68549784 -113865458 - THE1A LTR MaLR 0 355 1 323 102 0 0 chr6 68549786 68549835 -113865407 - THE1A-int LTR MaLR -2 1578 1530 9925 102 7 2 chr6 68549836 68551200 -113864042 - THE1A-int LTR MaLR -210 1370 1 2014 123 42 50 chr6 68551200 68551558 -113863684 - THE1A LTR MaLR 0 355 1 940 238 28 5 chr6 68552145 68552359 -113862883 + MER20 DNA MER1_type 1 219 0 14999 135 8 4 chr6 68552681 68555969 -113859273 - L1PA8 LINE L1 -9 6478 3184 6756 154 3 11 chr6 68555970 68557112 -113858130 - L1PA8 LINE L1 -4742 1133 1 21 0 0 0 chr6 68558078 68558099 -113857143 + AT_rich Low_complexity Low_complexity 1 21 0 1532 156 71 82 chr6 68558349 68558728 -113856514 - THE1C LTR MaLR 0 375 1 465 274 34 8 chr6 68559374 68559491 -113855751 + L2 LINE L2 3191 3310 -3 290 255 92 0 chr6 68559910 68560008 -113855234 - MLT1L LTR MaLR -3 612 506 3661 109 9 4 chr6 68560641 68561193 -113854049 - L1PA13 LINE L1 -6 6157 5603 254 341 111 8 chr6 68561387 68561513 -113853729 + MIR SINE MIR 49 187 -75 196 284 173 37 chr6 68561550 68561631 -113853611 - L2 LINE L2 0 3272 3181 24 0 0 0 chr6 68562080 68562104 -113853138 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr6 68562225 68562245 -113852997 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr6 68562849 68562872 -113852370 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr6 68563597 68563653 -113851589 + AT_rich Low_complexity Low_complexity 1 56 0 449 265 34 20 chr6 68563779 68563926 -113851316 + MIR SINE MIR 110 258 -4 2067 112 0 45 chr6 68564913 68565226 -113850016 + AluSg SINE Alu 1 299 -11 291 206 10 0 chr6 68565468 68565544 -113849698 - L1MC/D LINE L1 -554 5610 5561 675 299 132 19 chr6 68565679 68565842 -113849400 + L1MC4 LINE L1 7092 7235 -807 333 0 0 0 chr6 68565842 68565879 -113849363 + (CA)n Simple_repeat Simple_repeat 2 38 0 675 299 132 19 chr6 68565879 68566236 -113849006 + L1MC4 LINE L1 7235 7671 -371 522 196 49 49 chr6 68566254 68566417 -113848825 + L1MC4 LINE L1 7736 7898 -144 1911 144 0 0 chr6 68566445 68566758 -113848484 + AluSx SINE Alu 1 313 0 1903 141 3 0 chr6 68566831 68567139 -113848103 - AluSx SINE Alu 0 309 1 807 139 30 18 chr6 68567149 68567315 -113847927 - L1MC3 LINE L1 0 7785 7618 * 1687 210 48 166 chr6 68567292 68568162 -113847080 - L1MC3 LINE L1 -797 6988 6294 432 302 24 0 chr6 68568248 68568374 -113846868 - MER69 DNA AcHobo -2391 135 7 362 323 55 3 chr6 68568732 68568930 -113846312 + MIR SINE MIR 1 262 0 735 228 96 0 chr6 68569514 68569711 -113845531 - MER20 DNA MER1_type 0 219 4 25 0 0 0 chr6 68569782 68569807 -113845435 + AT_rich Low_complexity Low_complexity 1 25 0 243 156 13 26 chr6 68570307 68570384 -113844858 + (TA)n Simple_repeat Simple_repeat 2 77 0 185 270 63 0 chr6 68570974 68571037 -113844205 + L2 LINE L2 3202 3268 -4 327 296 87 78 chr6 68571037 68571381 -113843861 - L1M4 LINE L1 -2144 4002 3656 24 67 0 0 chr6 68572715 68572760 -113842482 + AT_rich Low_complexity Low_complexity 1 45 0 306 0 0 0 chr6 68573257 68573291 -113841951 + (TA)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr6 68573964 68573992 -113841250 + AT_rich Low_complexity Low_complexity 1 28 0 284 111 0 0 chr6 68574382 68574427 -113840815 - MADE1 DNA Mariner 0 80 36 243 128 0 0 chr6 68574468 68574507 -113840735 + MADE1 DNA Mariner 2 40 -40 280 367 87 13 chr6 68574696 68574846 -113840396 + MIR SINE MIR 5 165 -97 2065 130 7 0 chr6 68575502 68575802 -113839440 - AluSx SINE Alu 0 312 11 26 30 0 0 chr6 68577015 68577048 -113838194 + AT_rich Low_complexity Low_complexity 1 33 0 290 143 16 0 chr6 68577646 68577709 -113837533 + GA-rich Low_complexity Low_complexity 3 66 0 416 305 88 35 chr6 68577709 68577935 -113837307 + L1MC4 LINE L1 7087 7324 -718 711 282 91 29 chr6 68577989 68578298 -113836944 + L1MC4 LINE L1 7550 7877 -165 276 198 12 70 chr6 68578520 68578606 -113836636 + L1MC4 LINE L1 7961 8041 -1 406 286 25 0 chr6 68578614 68578733 -113836509 - MIR SINE MIR -140 122 1 196 247 178 0 chr6 68581447 68581520 -113833722 - L2 LINE L2 -5 3267 3182 297 343 41 76 chr6 68581647 68581968 -113833274 - L2 LINE L2 -288 3025 2706 217 270 96 9 chr6 68582009 68582124 -113833118 + MIR SINE MIR 134 258 -4 487 278 144 0 chr6 68582501 68582681 -113832561 - MIR SINE MIR -14 248 43 459 0 0 0 chr6 68582760 68582811 -113832431 + (CA)n Simple_repeat Simple_repeat 2 52 0 1940 147 0 10 chr6 68583004 68583304 -113831938 + AluSx SINE Alu 1 297 -15 2184 118 51 25 chr6 68583458 68583813 -113831429 + THE1B LTR MaLR 1 364 0 379 299 104 41 chr6 68584126 68584347 -113830895 - MIR SINE MIR -15 247 13 184 308 128 0 chr6 68584435 68584513 -113830729 + MIR SINE MIR 169 256 -6 605 113 0 0 chr6 68585115 68585195 -113830047 + Tigger4(Zombi) DNA MER2_type 5 84 -2647 1326 159 9 5 chr6 68585196 68585416 -113829826 - Tigger4(Zombi) DNA MER2_type -455 2276 2056 3007 153 28 15 chr6 68585424 68585954 -113829288 + Tigger4(Zombi) DNA MER2_type 2195 2731 0 248 243 0 0 chr6 68586302 68586372 -113828870 - L1ME4a LINE L1 -3 6118 6049 232 262 235 40 chr6 68587197 68587346 -113827896 + MIR SINE MIR 21 198 -64 199 320 51 0 chr6 68589840 68589918 -113825324 + L2 LINE L2 3227 3308 -5 243 125 0 0 chr6 68592562 68592602 -113822640 + (TG)n Simple_repeat Simple_repeat 2 41 0 1016 301 103 22 chr6 68593412 68593818 -113821424 + LTR16C LTR ERVL 53 491 0 327 227 15 0 chr6 68594152 68594218 -113821024 + LTR16C LTR ERVL 425 491 0 2241 245 56 33 chr6 68596152 68597228 -113818014 + L1ME2 LINE L1 4882 6001 -163 2271 174 16 28 chr6 68597228 68597432 -113817810 + MSTB LTR MaLR 2 207 -219 347 0 23 0 chr6 68597432 68597475 -113817767 + (TC)n Simple_repeat Simple_repeat 1 44 0 2271 174 16 28 chr6 68597475 68597700 -113817542 + MSTB LTR MaLR 207 426 0 2241 245 56 33 chr6 68597700 68597862 -113817380 + L1ME2 LINE L1 6001 6158 -6 365 271 55 55 chr6 68597944 68598127 -113817115 - MIR SINE MIR -12 196 11 325 243 7 103 chr6 68598129 68598265 -113816977 + MER112 DNA MER1_type 1 123 -137 218 244 0 13 chr6 68598267 68598345 -113816897 + (TA)n Simple_repeat Simple_repeat 1 77 0 6086 132 90 17 chr6 68598345 68599492 -113815750 + Tigger3b DNA MER2_type 2 1231 0 255 376 18 18 chr6 68600114 68600279 -113814963 - MIR SINE MIR -90 172 8 334 221 13 0 chr6 68600312 68600389 -113814853 - MER116 DNA Mariner -1 79 2 742 352 131 21 chr6 68600403 68601090 -113814152 + L2 LINE L2 1753 2592 -722 1850 112 16 0 chr6 68601090 68601348 -113813894 - AluSg SINE Alu -8 302 41 742 352 131 21 chr6 68601348 68601688 -113813554 + L2 LINE L2 2592 2893 -421 253 385 59 0 chr6 68601788 68601923 -113813319 + L2 LINE L2 2983 3125 -147 315 0 0 0 chr6 68602163 68602198 -113813044 + (CA)n Simple_repeat Simple_repeat 2 36 0 542 285 123 13 chr6 68603986 68604214 -113811028 + MIR SINE MIR 1 253 -9 188 167 0 19 chr6 68604335 68604389 -113810853 + (TA)n Simple_repeat Simple_repeat 1 53 0 2312 60 0 3 chr6 68604489 68604796 -113810446 - AluY SINE Alu 0 306 1 552 286 49 38 chr6 68605781 68605966 -113809276 + L1MDa LINE L1 91 277 -6263 2388 60 0 0 chr6 68605967 68606284 -113808958 + AluY SINE Alu 1 317 0 264 330 88 81 chr6 68606593 68607014 -113808228 - L2 LINE L2 -2 3270 2847 217 288 48 112 chr6 68607047 68607172 -113808070 - L2 LINE L2 -20 3252 3136 276 330 114 36 chr6 68607479 68607812 -113807430 - L2 LINE L2 -1205 2109 1751 2123 134 0 0 chr6 68608494 68608793 -113806449 + AluSg SINE Alu 1 299 -11 206 0 0 65 chr6 68608842 68608873 -113806369 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 267 264 42 0 chr6 68608877 68608949 -113806293 - MIR SINE MIR -81 181 107 410 282 124 13 chr6 68609979 68610133 -113805109 - MIR3 SINE MIR -21 187 20 22 56 0 0 chr6 68611890 68611926 -113803316 + AT_rich Low_complexity Low_complexity 1 36 0 244 327 103 64 chr6 68614605 68614761 -113800481 - MIR SINE MIR -52 210 49 431 373 40 42 chr6 68614850 68615322 -113799920 - L2 LINE L2 -7 3306 2836 261 0 0 0 chr6 68617459 68617488 -113797754 + (TG)n Simple_repeat Simple_repeat 2 30 0 808 212 59 133 chr6 68618584 68619042 -113796200 + L1MC4 LINE L1 7632 7995 0 2002 125 0 0 chr6 68619414 68619722 -113795520 + AluSq SINE Alu 3 310 0 387 0 0 0 chr6 68620121 68620164 -113795078 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 3582 214 51 16 chr6 68620184 68622194 -113793048 + L1MB5 LINE L1 3964 6166 -8 29 0 0 0 chr6 68622722 68622751 -113792491 + AT_rich Low_complexity Low_complexity 1 29 0 294 50 0 0 chr6 68623061 68623101 -113792141 + (CA)n Simple_repeat Simple_repeat 1 40 0 34 0 0 0 chr6 68623396 68623430 -113791812 + AT_rich Low_complexity Low_complexity 1 34 0 840 233 21 10 chr6 68623431 68623624 -113791618 - MLT1F1 LTR MaLR 0 567 373 511 286 30 48 chr6 68623742 68623910 -113791332 - MIR SINE MIR -91 171 7 1497 234 79 29 chr6 68624649 68625053 -113790189 - MLT1D LTR MaLR -2 503 70 1365 254 72 37 chr6 68625053 68625537 -113789705 + MLT1D LTR MaLR 5 505 0 1497 234 79 29 chr6 68625537 68625611 -113789631 - MLT1D LTR MaLR -435 70 1 21 0 0 0 chr6 68625895 68625916 -113789326 + AT_rich Low_complexity Low_complexity 1 21 0 232 279 0 58 chr6 68626050 68626204 -113789038 + A-rich Low_complexity Low_complexity 5 149 0 198 103 0 0 chr6 68627028 68627057 -113788185 + (T)n Simple_repeat Simple_repeat 1 29 0 287 324 68 64 chr6 68627217 68627436 -113787806 - L2 LINE L2 -190 3082 2863 783 292 112 29 chr6 68627472 68627883 -113787359 + MLT1J LTR MaLR 56 500 -11 532 340 34 31 chr6 68627883 68628174 -113787068 - L2 LINE L2 -685 2629 2338 204 67 0 0 chr6 68628452 68628482 -113786760 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 185 385 15 30 chr6 68629415 68629550 -113785692 - L2 LINE L2 -21 3292 3160 25 51 0 0 chr6 68630325 68630364 -113784878 + AT_rich Low_complexity Low_complexity 1 39 0 969 195 48 82 chr6 68630564 68630856 -113784386 - AluJo SINE Alu -19 293 12 545 283 80 21 chr6 68630865 68631240 -113784002 - L1MEc LINE L1 -1960 4255 3859 397 266 104 12 chr6 68631268 68631441 -113783801 - L1MEc LINE L1 -2911 3304 3116 1938 106 0 88 chr6 68631446 68631775 -113783467 - AluSx SINE Alu -12 300 1 477 0 0 0 chr6 68631779 68631832 -113783410 + (TG)n Simple_repeat Simple_repeat 2 54 0 919 118 0 0 chr6 68631835 68631954 -113783288 - AluSq/x SINE Alu -194 119 1 919 280 109 15 chr6 68631963 68632578 -113782664 - L1MEc LINE L1 -3115 3100 2428 302 308 128 0 chr6 68632581 68632753 -113782489 - L1MEc LINE L1 -4658 1738 1545 1621 252 60 50 chr6 68632773 68633455 -113781787 - L1ME1 LINE L1 -5 6230 5542 1025 255 141 36 chr6 68633455 68633710 -113781532 - L1ME1 LINE L1 -3204 3011 2784 332 43 22 0 chr6 68633710 68633756 -113781486 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1025 255 141 36 chr6 68633756 68634112 -113781130 - L1ME1 LINE L1 -3431 2784 2467 2309 34 0 41 chr6 68634112 68634436 -113780806 - AluY SINE Alu 0 312 1 1025 255 141 36 chr6 68634436 68634531 -113780711 - L1ME1 LINE L1 -3748 2467 2383 411 139 19 65 chr6 68634531 68634639 -113780603 - L1MA5 LINE L1 -3 6297 6195 1025 255 141 36 chr6 68634639 68634712 -113780530 - L1ME1 LINE L1 -3832 2383 2177 1083 310 146 16 chr6 68634738 68635300 -113779942 - L1ME1 LINE L1 -5727 669 35 240 228 41 103 chr6 68635338 68635483 -113779759 - LTR33 LTR ERVL -4 517 382 206 0 0 65 chr6 68635484 68635515 -113779727 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 353 266 169 16 chr6 68635692 68635816 -113779426 - LTR33 LTR ERVL -378 143 1 385 336 45 48 chr6 68635834 68636146 -113779096 + L2 LINE L2 2420 2730 -584 648 82 0 0 chr6 68636466 68636551 -113778691 + AluSp/q SINE Alu 192 276 -37 4564 139 8 40 chr6 68636551 68637406 -113777836 + L1PB1 LINE L1 5323 6150 -1 729 240 87 10 chr6 68637684 68637892 -113777350 + MIR SINE MIR 39 262 0 910 306 90 32 chr6 68637920 68638431 -113776811 + L2 LINE L2 1518 3313 0 980 171 6 6 chr6 68639023 68639193 -113776049 + MLT1B LTR MaLR 1 170 -220 42705 44 7 8 chr6 68639195 68645350 -113769892 + L1PA4 LINE L1 4 6152 -3 28 48 0 0 chr6 68645370 68645412 -113769830 + AT_rich Low_complexity Low_complexity 1 42 0 1183 181 0 0 chr6 68645441 68645640 -113769602 + MLT1B LTR MaLR 192 390 0 235 357 221 4 chr6 68645989 68646269 -113768973 + L2 LINE L2 2636 2976 -338 30 0 0 0 chr6 68646382 68646412 -113768830 + AT_rich Low_complexity Low_complexity 1 30 0 32 43 0 0 chr6 68647831 68647877 -113767365 + AT_rich Low_complexity Low_complexity 1 46 0 4784 167 35 11 chr6 68648004 68648900 -113766342 + L1MC1 LINE L1 5398 6314 -19 365 326 54 50 chr6 68650245 68650484 -113764758 + MIR SINE MIR 9 248 -14 242 364 107 16 chr6 68650555 68650797 -113764445 - L2 LINE L2 -787 2527 2264 21 0 0 0 chr6 68652689 68652710 -113762532 + AT_rich Low_complexity Low_complexity 1 21 0 321 339 31 16 chr6 68652717 68652844 -113762398 - L2 LINE L2 -12 3260 3132 289 264 46 11 chr6 68653216 68653303 -113761939 - L2 LINE L2 -4 3309 3220 35 54 0 0 chr6 68653512 68653568 -113761674 + AT_rich Low_complexity Low_complexity 1 56 0 220 312 0 13 chr6 68654495 68654572 -113760670 + CT-rich Low_complexity Low_complexity 2 77 0 1235 207 68 47 chr6 68654920 68655302 -113759940 - MLT1B LTR MaLR 0 390 1 191 125 25 0 chr6 68655506 68655546 -113759696 + CT-rich Low_complexity Low_complexity 2 42 0 284 0 28 0 chr6 68655546 68655582 -113759660 + (CA)n Simple_repeat Simple_repeat 1 37 0 696 244 138 20 chr6 68656540 68656794 -113758448 - MER115 DNA AcHobo -3 690 407 232 204 0 0 chr6 68656954 68656998 -113758244 + L2 LINE L2 3217 3260 -12 203 189 0 0 chr6 68657592 68657629 -113757613 + T-rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr6 68657629 68657651 -113757591 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7543 26 0 2 chr6 68657651 68658809 -113756433 - L1PA4 LINE L1 -18 6137 4981 3737 212 38 20 chr6 68658909 68659612 -113755630 - L1MB8 LINE L1 -11 6167 5439 1688 223 16 11 chr6 68659612 68659975 -113755267 + MLT1A1 LTR MaLR 1 365 0 3737 212 38 20 chr6 68659975 68660408 -113754834 - L1MB8 LINE L1 -739 5439 5015 524 327 48 37 chr6 68660410 68660682 -113754560 + L2 LINE L2 2944 3218 -95 23 0 0 0 chr6 68661118 68661141 -113754101 + AT_rich Low_complexity Low_complexity 1 23 0 403 250 206 34 chr6 68662373 68662577 -113752665 + MIR SINE MIR 24 262 0 1158 153 0 10 chr6 68664284 68664480 -113750762 + MLT2C1 LTR ERVL 8 201 -196 1348 294 60 10 chr6 68664480 68664997 -113750245 + L1P4 LINE L1 12 554 -7027 2216 111 50 29 chr6 68665001 68665344 -113749898 - THE1B LTR MaLR 0 364 15 847 320 69 71 chr6 68665384 68666482 -113748760 + L1P4 LINE L1 1076 2171 -5410 12162 240 44 17 chr6 68666719 68670834 -113744408 + L1P4 LINE L1 2182 6454 -1150 1844 154 0 11 chr6 68670834 68671143 -113744099 - AluSx SINE Alu 0 306 1 12162 240 44 17 chr6 68671143 68671835 -113743407 + L1P4 LINE L1 6454 7126 -478 452 175 100 0 chr6 68671876 68671956 -113743286 + L1PA12 LINE L1 9 96 -7485 7473 179 198 7 chr6 68671996 68673457 -113741785 + L1PA12 LINE L1 54 1793 -5788 2002 148 30 21 chr6 68674897 68675269 -113739973 - THE1C LTR MaLR 0 375 1 2224 66 28 3 chr6 68675597 68675886 -113739356 - AluY SINE Alu -10 301 6 246 32 0 0 chr6 68675947 68675978 -113739264 + (CA)n Simple_repeat Simple_repeat 2 32 0 194 369 69 15 chr6 68677688 68677818 -113737424 + MIR SINE MIR 2 138 -124 702 178 16 0 chr6 68678436 68678565 -113736677 + MER69 DNA AcHobo 19 149 -2377 243 0 0 0 chr6 68678594 68678621 -113736621 + (TA)n Simple_repeat Simple_repeat 1 27 0 11058 157 19 31 chr6 68678659 68680666 -113734576 - Tigger2 DNA MER2_type 0 2718 737 21 0 0 0 chr6 68680964 68680985 -113734257 + AT_rich Low_complexity Low_complexity 1 21 0 2196 66 35 0 chr6 68681037 68681323 -113733919 - AluY SINE Alu -15 296 1 209 238 119 36 chr6 68681384 68681468 -113733774 + MIR SINE MIR 171 261 -1 216 0 0 0 chr6 68681977 68682001 -113733241 + (CA)n Simple_repeat Simple_repeat 1 24 0 2040 117 0 0 chr6 68682437 68682719 -113732523 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr6 68682722 68682743 -113732499 + AT_rich Low_complexity Low_complexity 1 21 0 5333 143 15 1 chr6 68683644 68684501 -113730741 + L1PA12 LINE L1 1856 2724 -4857 5859 23 11 0 chr6 68684501 68685195 -113730047 + L1PA4 LINE L1 5449 6150 -5 2118 125 0 0 chr6 68685612 68685907 -113729335 + AluSx SINE Alu 3 297 -15 1322 204 72 129 chr6 68686010 68686616 -113728626 + MER77 LTR ERV1 55 601 -4 310 248 69 83 chr6 68686636 68686781 -113728461 - MLT1J LTR MaLR -132 379 237 511 326 41 10 chr6 68687188 68687384 -113727858 - MLT1J LTR MaLR -309 202 1 1111 255 130 9 chr6 68687531 68687986 -113727256 + L1ME2 LINE L1 5646 6155 -9 27 0 0 0 chr6 68687986 68688013 -113727229 + AT_rich Low_complexity Low_complexity 1 27 0 226 370 0 0 chr6 68688199 68688272 -113726970 + MER5A DNA MER1_type 117 189 0 23 54 0 0 chr6 68688470 68688507 -113726735 + AT_rich Low_complexity Low_complexity 1 37 0 286 221 126 31 chr6 68689305 68689432 -113725810 + MIR SINE MIR 124 262 0 190 322 0 0 chr6 68690910 68690969 -113724273 + L2 LINE L2 3251 3309 -4 1671 178 11 7 chr6 68692749 68693066 -113722176 - AluJo SINE Alu 0 318 1 37 0 0 0 chr6 68693139 68693176 -113722066 + AT_rich Low_complexity Low_complexity 1 37 0 435 123 0 0 chr6 68693807 68693888 -113721354 + (TC)n Simple_repeat Simple_repeat 2 82 0 189 74 0 0 chr6 68693890 68693917 -113721325 + (CA)n Simple_repeat Simple_repeat 1 27 0 4928 120 46 0 chr6 68693946 68694749 -113720493 + L1PA16 LINE L1 5317 6156 -10 22 0 0 0 chr6 68694805 68694827 -113720415 + AT_rich Low_complexity Low_complexity 1 22 0 230 279 0 51 chr6 68696857 68696936 -113718306 - L2 LINE L2 -910 2404 2330 1311 206 21 11 chr6 68697258 68697539 -113717703 + L1MB3 LINE L1 5366 5649 -534 2580 174 18 21 chr6 68697641 68698154 -113717088 + L1MB3 LINE L1 5673 6183 0 21 0 0 0 chr6 68698961 68698982 -113716260 + AT_rich Low_complexity Low_complexity 1 21 0 245 379 95 0 chr6 68700447 68700563 -113714679 - L2 LINE L2 -12 3260 3134 343 360 49 12 chr6 68700596 68700760 -113714482 + L3 LINE CR1 1407 1576 -1 21 0 0 0 chr6 68701164 68701185 -113714057 + AT_rich Low_complexity Low_complexity 1 21 0 500 310 142 45 chr6 68701867 68702438 -113712804 + L2 LINE L2 1966 2591 -723 1979 122 4 0 chr6 68702726 68703004 -113712238 - AluSg SINE Alu -11 299 21 24 0 0 0 chr6 68703010 68703034 -113712208 + AT_rich Low_complexity Low_complexity 1 24 0 428 371 83 30 chr6 68703696 68704357 -113710885 + L2 LINE L2 2601 3301 -12 633 370 88 42 chr6 68704440 68705349 -113709893 + L3 LINE CR1 199 1149 -428 216 337 111 47 chr6 68705565 68705755 -113709487 - MIR SINE MIR -12 250 49 802 184 0 0 chr6 68706213 68706338 -113708904 + FRAM SINE Alu 1 122 -54 209 331 79 39 chr6 68706392 68706519 -113708723 - MIR SINE MIR -116 146 15 6075 73 39 0 chr6 68706940 68707735 -113707507 + LTR12 LTR ERV1 1 826 0 17266 30 1 3 chr6 68710719 68713425 -113701817 - L1PA3 LINE L1 -147 6008 3308 246 128 0 0 chr6 68713933 68713972 -113701270 + (ATG)n Simple_repeat Simple_repeat 1 39 0 832 296 45 4 chr6 68713979 68714226 -113701016 - MIR SINE MIR -5 257 1 384 317 211 0 chr6 68714314 68714494 -113700748 - MER58A DNA MER1_type -1 223 6 548 254 24 77 chr6 68714942 68715190 -113700052 - L1ME1 LINE L1 0 6959 6725 1153 233 108 24 chr6 68715209 68715665 -113699577 - L1ME1 LINE L1 -413 6548 6055 * 1412 300 82 43 chr6 68715664 68716072 -113699170 - L1ME1 LINE L1 -4600 2522 2131 270 81 0 0 chr6 68716072 68716109 -113699133 + (TG)n Simple_repeat Simple_repeat 1 37 0 1412 300 82 43 chr6 68716109 68717143 -113698099 - L1ME1 LINE L1 -4991 2131 814 650 254 27 43 chr6 68717357 68717613 -113697629 + L1ME2 LINE L1 5905 6156 -8 204 426 68 6 chr6 68720042 68720204 -113695038 + MIR SINE MIR 20 191 -71 381 43 0 0 chr6 68721556 68721603 -113693639 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 53 0 0 chr6 68722772 68722810 -113692432 + AT_rich Low_complexity Low_complexity 1 38 0 6265 143 18 12 chr6 68722836 68724338 -113690904 - L1MA3 LINE L1 0 7724 6213 12413 166 48 29 chr6 68724438 68725069 -113690173 - L1MA3 LINE L1 -2221 5344 4727 2252 83 3 0 chr6 68725069 68725369 -113689873 - AluY SINE Alu -10 301 1 12413 166 48 29 chr6 68725369 68728685 -113686557 - L1MA3 LINE L1 -2838 4727 1323 311 0 0 0 chr6 68728738 68728775 -113686467 - L1P LINE L1 -1805 4341 4305 2284 42 0 3 chr6 68728775 68729057 -113686185 + L1PA4 LINE L1 5869 6152 -3 472 294 111 63 chr6 68729168 68729593 -113685649 - L1MEc LINE L1 -3435 2780 2336 260 296 10 0 chr6 68730054 68730152 -113685090 - L1MEc LINE L1 -4637 1759 1661 298 322 38 33 chr6 68730315 68730498 -113684744 + MLT1H1 LTR MaLR 75 258 -297 270 204 19 0 chr6 68730544 68730598 -113684644 + MLT1H1 LTR MaLR 497 551 -4 1476 242 77 71 chr6 68730771 68731304 -113683938 - MER77 LTR ERV1 -6 599 64 325 237 77 6 chr6 68731668 68731824 -113683418 + MER53 DNA DNA 1 167 -22 444 327 85 24 chr6 68734002 68734213 -113681029 - MIR SINE MIR -30 232 9 280 107 0 36 chr6 68734425 68734481 -113680761 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1268 172 4 0 chr6 68734984 68735222 -113680020 + L1MA5 LINE L1 6062 6300 0 21 0 0 0 chr6 68735745 68735766 -113679476 + AT_rich Low_complexity Low_complexity 1 21 0 1682 128 210 3 chr6 68735892 68736211 -113679031 + L1PA11 LINE L1 5784 6168 -6 1839 154 3 10 chr6 68736645 68736944 -113678298 + AluSx SINE Alu 5 301 -11 24 53 0 0 chr6 68736985 68737023 -113678219 + AT_rich Low_complexity Low_complexity 1 38 0 2116 116 3 0 chr6 68737331 68737633 -113677609 - AluSx SINE Alu -9 303 1 1661 154 0 45 chr6 68738075 68738361 -113676881 + AluJb SINE Alu 7 279 -33 228 86 0 0 chr6 68738363 68738398 -113676844 + (CAA)n Simple_repeat Simple_repeat 1 35 0 24 0 0 0 chr6 68738519 68738543 -113676699 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr6 68738784 68738806 -113676436 + (A)n Simple_repeat Simple_repeat 1 22 0 253 197 61 0 chr6 68739466 68739532 -113675710 - MLT2B1 LTR ERVL 0 520 451 897 165 34 6 chr6 68739553 68739729 -113675513 - Tigger1 DNA MER2_type 0 2418 2238 4312 192 12 17 chr6 68739747 68739828 -113675414 + L1PA13 LINE L1 2682 2762 -3401 180 0 0 0 chr6 68739828 68739848 -113675394 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 4312 192 12 17 chr6 68739848 68743079 -113672163 + L1PA13 LINE L1 2762 6159 -4 605 289 63 39 chr6 68743329 68743744 -113671498 + HAL1 LINE L1 1260 1684 -823 357 287 61 37 chr6 68743778 68743942 -113671300 + HAL1 LINE L1 2057 2224 -283 4359 52 2 0 chr6 68743963 68744522 -113670720 + L1PA5 LINE L1 3411 3970 -2176 11158 36 7 1 chr6 68744622 68746758 -113668484 + L1PA5 LINE L1 3999 6151 -3 1961 156 10 3 chr6 68746842 68747150 -113668092 - AluSx SINE Alu 0 312 3 22 0 0 0 chr6 68747179 68747201 -113668041 + AT_rich Low_complexity Low_complexity 1 22 0 603 195 49 24 chr6 68747387 68747551 -113667691 + MER96B DNA MER1_type? 12 179 -238 431 318 91 65 chr6 68747876 68748370 -113666872 - MLT1J LTR MaLR 0 511 5 196 312 70 51 chr6 68749197 68749354 -113665888 - MIR SINE MIR -56 206 47 292 272 143 11 chr6 68749488 68749806 -113665436 - L1M4b LINE L1 -5177 1783 1331 333 109 0 0 chr6 68749891 68749946 -113665296 + (TG)n Simple_repeat Simple_repeat 2 56 0 252 0 0 0 chr6 68750339 68750367 -113664875 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 191 88 29 0 chr6 68750366 68750400 -113664842 + (TG)n Simple_repeat Simple_repeat 2 36 0 * 7128 104 17 2 chr6 68750763 68751754 -113663488 + L1PA7 LINE L1 4291 5319 -835 216 0 0 0 chr6 68751754 68751778 -113663464 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7128 104 17 2 chr6 68751778 68752618 -113662624 + L1PA7 LINE L1 5319 6145 -9 377 266 36 83 chr6 68752777 68753035 -113662207 + MER77 LTR ERV1 56 372 -233 565 190 41 16 chr6 68753097 68753218 -113662024 + MER77 LTR ERV1 468 591 -14 358 296 31 57 chr6 68754009 68754168 -113661074 + MER5A DNA MER1_type 30 184 -5 509 82 0 0 chr6 68754506 68754579 -113660663 + L1PA3 LINE L1 6080 6152 -3 30 0 0 0 chr6 68754579 68754609 -113660633 + AT_rich Low_complexity Low_complexity 1 30 0 467 245 61 41 chr6 68756174 68756468 -113658774 - L1M4 LINE L1 -1962 4184 3885 23 33 0 0 chr6 68756540 68756570 -113658672 + AT_rich Low_complexity Low_complexity 1 30 0 560 292 12 12 chr6 68757461 68757629 -113657613 - MLT1H LTR MaLR -5 544 377 1266 224 80 14 chr6 68757801 68758150 -113657092 - MLT1A2 LTR MaLR 0 374 3 330 197 42 0 chr6 68758372 68758443 -113656799 - L1PA16 LINE L1 -9 6157 6084 4071 192 34 4 chr6 68758446 68759903 -113655339 - L1PA16 LINE L1 -170 5996 4495 7452 252 25 30 chr6 68759907 68760083 -113655159 + L1PA15-16 LINE L1 1989 2164 -4685 2204 129 0 0 chr6 68760083 68760393 -113654849 + AluSg SINE Alu 1 310 0 7452 252 25 30 chr6 68760393 68762995 -113652247 + L1PA15-16 LINE L1 2164 4770 -2079 3549 174 19 53 chr6 68762967 68764077 -113651165 - L1P4 LINE L1 -622 6195 5132 * 1015 103 0 26 chr6 68764084 68764240 -113651002 - L1PB1 LINE L1 0 6151 6000 11574 175 41 24 chr6 68764240 68768517 -113646725 - L1PBa LINE L1 -1201 5661 1308 2512 149 106 17 chr6 68768523 68769006 -113646236 - L1PBa LINE L1 -5704 1159 634 967 207 10 0 chr6 68769006 68769204 -113646038 - L1PBa LINE L1 -6663 200 1 11721 237 21 16 chr6 68769214 68773428 -113641814 - L1P4 LINE L1 -1653 5144 752 29 47 0 0 chr6 68773676 68773719 -113641523 + AT_rich Low_complexity Low_complexity 1 43 0 536 303 150 22 chr6 68774640 68774954 -113640288 + L2 LINE L2 2935 3288 -25 217 0 61 0 chr6 68776354 68776387 -113638855 + (TA)n Simple_repeat Simple_repeat 1 35 0 27 49 0 0 chr6 68777274 68777315 -113637927 + AT_rich Low_complexity Low_complexity 1 41 0 1475 48 0 5 chr6 68777842 68778030 -113637212 - L1PA4 LINE L1 0 6155 5969 21 0 0 0 chr6 68778431 68778452 -113636790 + AT_rich Low_complexity Low_complexity 1 21 0 1131 171 187 73 chr6 68778774 68779089 -113636153 - MER31B LTR ERV1 -5 461 111 2186 160 60 22 chr6 68779097 68779598 -113635644 - L1MA3 LINE L1 0 6305 5786 210 78 0 78 chr6 68779605 68779656 -113635586 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 279 159 0 0 chr6 68779659 68779703 -113635539 + L1M2 LINE L1 5725 5768 -523 324 0 0 0 chr6 68779720 68779756 -113635486 + (CA)n Simple_repeat Simple_repeat 2 37 0 792 214 37 17 chr6 68779779 68780002 -113635240 - L1P5 LINE L1 -384 5770 5552 2989 180 22 7 chr6 68780021 68780616 -113634626 - L1MC1 LINE L1 0 6333 5730 3613 237 101 28 chr6 68780618 68781183 -113634059 - L1MDa LINE L1 -2402 4138 3616 1596 238 6 3 chr6 68781183 68781545 -113633697 - MLT1A1 LTR MaLR -2 363 1 3613 237 101 28 chr6 68781545 68782438 -113632804 - L1MDa LINE L1 -2924 3616 2570 2831 130 8 17 chr6 68782447 68782915 -113632327 - L1PA15 LINE L1 0 6165 5702 550 200 43 0 chr6 68782916 68783031 -113632211 - MER31B LTR ERV1 -346 120 1 195 295 33 78 chr6 68783651 68783805 -113631437 + MIR SINE MIR 74 220 -42 413 316 102 62 chr6 68783943 68784459 -113630783 + L2 LINE L2 2774 3305 -8 6335 77 9 5 chr6 68784511 68785373 -113629869 - L1PA8 LINE L1 -7 6165 5300 225 0 0 0 chr6 68785873 68785898 -113629344 + (A)n Simple_repeat Simple_repeat 1 25 0 1963 121 16 7 chr6 68786058 68786364 -113628878 - AluSg SINE Alu -1 309 1 23 54 0 0 chr6 68786537 68786574 -113628668 + AT_rich Low_complexity Low_complexity 1 37 0 246 255 23 47 chr6 68787052 68787207 -113628035 + L1ME LINE L1 5691 5849 -272 2213 86 0 32 chr6 68787287 68787601 -113627641 - AluSc SINE Alu -5 304 1 24 53 0 0 chr6 68787607 68787645 -113627597 + AT_rich Low_complexity Low_complexity 1 38 0 24 85 0 0 chr6 68789183 68789242 -113626000 + AT_rich Low_complexity Low_complexity 1 59 0 214 238 29 29 chr6 68789400 68789505 -113625737 + T-rich Low_complexity Low_complexity 2 106 0 353 354 10 0 chr6 68790115 68790211 -113625031 + L2 LINE L2 3134 3230 -42 253 353 40 70 chr6 68790344 68790545 -113624697 - MLT1K LTR MaLR -391 197 3 420 308 69 0 chr6 68790782 68790912 -113624330 + L2 LINE L2 3134 3272 0 233 298 0 0 chr6 68792365 68792422 -113622820 + L2 LINE L2 3256 3312 -1 987 174 87 15 chr6 68793292 68793488 -113621754 + MER2 DNA MER2_type 1 210 -135 33 0 0 0 chr6 68793500 68793533 -113621709 + AT_rich Low_complexity Low_complexity 1 33 0 1789 129 30 17 chr6 68794581 68794883 -113620359 - L1MA3 LINE L1 -20 6285 5980 570 201 11 23 chr6 68794893 68795067 -113620175 + GA-rich Low_complexity Low_complexity 1 172 0 30 45 0 0 chr6 68795492 68795536 -113619706 + AT_rich Low_complexity Low_complexity 1 44 0 2785 87 0 6 chr6 68796280 68796646 -113618596 + THE1B LTR MaLR 1 364 0 1096 210 183 31 chr6 68797065 68797513 -113617729 - MER69 DNA AcHobo -1 2525 2010 944 308 163 4 chr6 68797518 68797998 -113617244 - MER69 DNA AcHobo -1969 557 2 654 269 15 20 chr6 68800479 68800680 -113614562 + L1MB7 LINE L1 12 211 -6648 1032 328 47 30 chr6 68800703 68801170 -113614072 + L1MB7 LINE L1 482 956 -5903 1775 265 68 41 chr6 68801686 68802111 -113613131 + L1MB7 LINE L1 1205 1617 -5342 1940 135 3 7 chr6 68802111 68802400 -113612842 + AluSx SINE Alu 1 288 -24 1775 265 68 41 chr6 68802400 68803026 -113612216 + L1MB7 LINE L1 1617 2278 -4681 * 5172 217 74 21 chr6 68803018 68805125 -113610117 + L1MB7 LINE L1 4467 6691 -304 489 211 41 41 chr6 68805175 68805322 -113609920 + MER97a DNA MER1_type? 2 148 -746 361 189 0 67 chr6 68805490 68805543 -113609699 + MER67D LTR ERV1 1 47 -467 213 39 0 0 chr6 68805543 68805569 -113609673 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 361 189 0 67 chr6 68805569 68805605 -113609637 + MER67D LTR ERV1 47 84 -430 1538 204 60 0 chr6 68805653 68805971 -113609271 + MER67C LTR ERV1 67 403 -307 224 288 30 0 chr6 68806723 68806789 -113608453 + L3 LINE CR1 1355 1422 -155 1011 182 11 0 chr6 68806816 68806992 -113608250 + MER6B DNA MER2_type 32 209 -1 209 294 29 0 chr6 68807014 68807082 -113608160 + MIR SINE MIR 63 132 -130 23 33 0 0 chr6 68811426 68811456 -113603786 + AT_rich Low_complexity Low_complexity 1 30 0 252 239 97 30 chr6 68811824 68811958 -113603284 + L1MC/D LINE L1 5664 5806 -2002 1154 294 50 63 chr6 68813335 68813913 -113601329 - L1ME LINE L1 -4968 1112 528 2228 99 3 0 chr6 68813913 68814216 -113601026 - AluSg SINE Alu -4 306 3 1154 294 50 63 chr6 68814216 68814680 -113600562 - L1ME LINE L1 -5552 528 88 207 88 0 0 chr6 68814680 68814714 -113600528 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1154 294 50 63 chr6 68814714 68814773 -113600469 - L1ME LINE L1 -5992 88 30 201 197 184 26 chr6 68815031 68815107 -113600135 - MIR SINE MIR -89 173 86 294 29 0 0 chr6 68815904 68815939 -113599303 + (CA)n Simple_repeat Simple_repeat 2 36 0 1660 172 17 21 chr6 68817483 68817774 -113597468 + AluJb SINE Alu 1 290 -22 1664 204 0 0 chr6 68818744 68819043 -113596199 + AluJb SINE Alu 2 300 -12 28813 123 12 70 chr6 68819255 68825774 -113589468 + L1PA7 LINE L1 12 6151 -3 1511 177 7 11 chr6 68825887 68826169 -113589073 - L1MA6 LINE L1 -22 6278 5998 23 33 0 0 chr6 68827910 68827940 -113587302 + AT_rich Low_complexity Low_complexity 1 30 0 720 250 0 0 chr6 68828961 68829113 -113586129 - MLT1D LTR MaLR 0 505 354 1248 195 29 4 chr6 68829216 68829457 -113585785 + MLT1A1 LTR MaLR 119 365 0 21 36 0 0 chr6 68829513 68829541 -113585701 + AT_rich Low_complexity Low_complexity 1 28 0 340 314 92 20 chr6 68830544 68830697 -113584545 - MLT1L LTR MaLR -237 378 215 21 36 0 0 chr6 68830823 68830851 -113584391 + AT_rich Low_complexity Low_complexity 1 28 0 263 265 73 29 chr6 68831141 68831277 -113583965 + L1ME1 LINE L1 5524 5665 -456 466 294 11 28 chr6 68831420 68831600 -113583642 + L1ME1 LINE L1 5938 6114 -52 2854 3 0 0 chr6 68831602 68831913 -113583329 + AluYb8 SINE Alu 1 311 -7 217 191 0 32 chr6 68831923 68831986 -113583256 + GA-rich Low_complexity Low_complexity 2 62 0 815 336 73 13 chr6 68833436 68833888 -113581354 - REP3 LTR ERV -83 479 1 485 309 104 31 chr6 68836625 68837010 -113578232 + L1MC/D LINE L1 5256 5668 -2140 491 281 208 10 chr6 68837104 68837224 -113578018 - L2 LINE L2 -5 3308 3213 192 97 0 0 chr6 68837224 68837255 -113577987 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 491 281 208 10 chr6 68837255 68837422 -113577820 - L2 LINE L2 -100 3213 2964 221 333 9 0 chr6 68837552 68837657 -113577585 + (TATG)n Simple_repeat Simple_repeat 4 109 0 26 50 0 0 chr6 68837835 68837875 -113577367 + AT_rich Low_complexity Low_complexity 1 40 0 32 43 0 0 chr6 68838261 68838307 -113576935 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr6 68838429 68838454 -113576788 + AT_rich Low_complexity Low_complexity 1 25 0 191 289 0 0 chr6 68840251 68840289 -113574953 - MIR SINE MIR -108 100 63 2170 98 0 3 chr6 68840441 68840738 -113574504 - L1PA11 LINE L1 -20 6154 5859 23 0 0 0 chr6 68841241 68841264 -113573978 + AT_rich Low_complexity Low_complexity 1 23 0 206 333 0 0 chr6 68841797 68841848 -113573394 - MIR SINE MIR -97 111 61 28 48 0 0 chr6 68841883 68841925 -113573317 + AT_rich Low_complexity Low_complexity 1 42 0 374 293 21 57 chr6 68843076 68843216 -113572026 + MIR3 SINE MIR 34 168 -40 438 327 13 6 chr6 68843565 68843724 -113571518 + MER5B DNA MER1_type 18 177 -1 2117 123 0 3 chr6 68845417 68845718 -113569524 + AluSq SINE Alu 1 300 -13 462 331 58 18 chr6 68845729 68846007 -113569235 + L2 LINE L2 2246 2534 -780 797 177 0 0 chr6 68846209 68846333 -113568909 + FLAM_C SINE Alu 1 124 -9 437 357 45 24 chr6 68846468 68846849 -113568393 + L1MC4a LINE L1 3289 3677 -2469 310 277 102 25 chr6 68846852 68847087 -113568155 + L1MC4a LINE L1 3706 3958 -2188 653 292 42 75 chr6 68847562 68847818 -113567424 + L1MC4a LINE L1 4178 4441 -1705 2258 119 0 0 chr6 68847818 68848129 -113567113 + AluSq SINE Alu 1 311 -2 653 292 42 75 chr6 68848129 68848775 -113566467 + L1MC4a LINE L1 4441 5050 -1096 360 259 90 38 chr6 68848824 68849036 -113566206 + L1MC4a LINE L1 5871 6093 -1715 1957 263 78 5 chr6 68849107 68849786 -113565456 + L1MC4a LINE L1 6615 7263 -545 941 250 106 77 chr6 68849818 68850445 -113564797 + LTR41 LTR ERVL 76 767 -6 770 218 65 35 chr6 68850449 68850678 -113564564 + L1MC4a LINE L1 7270 7505 -303 245 305 21 21 chr6 68850749 68850844 -113564398 + L2 LINE L2 2796 2890 -424 370 297 63 0 chr6 68850959 68851070 -113564172 + L2 LINE L2 3186 3303 -10 289 264 0 35 chr6 68851436 68851523 -113563719 - MLT1J2 LTR MaLR -13 437 354 536 250 40 67 chr6 68851578 68851802 -113563440 - MLT1J1 LTR MaLR -225 221 4 393 320 23 8 chr6 68852411 68852539 -113562703 + MIR SINE MIR 14 143 -119 957 293 33 21 chr6 68852748 68853082 -113562160 + MLT1J1 LTR MaLR 1 338 -108 593 331 24 43 chr6 68853691 68853945 -113561297 - MLT1H1 LTR MaLR -290 265 17 2126 158 5 11 chr6 68853970 68854337 -113560905 + MLT1A1 LTR MaLR 1 365 0 1427 112 14 23 chr6 68854621 68854835 -113560407 - THE1B LTR MaLR -152 212 1 3893 83 14 2 chr6 68855007 68855563 -113559679 + L1PA13 LINE L1 5601 6163 0 31 0 0 0 chr6 68855581 68855612 -113559630 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr6 68857570 68857599 -113557643 + AT_rich Low_complexity Low_complexity 1 29 0 26 52 0 17 chr6 68858660 68858688 -113556554 + AT_rich Low_complexity Low_complexity 1 28 -29 1935 145 3 0 chr6 68858688 68858992 -113556250 - AluSx SINE Alu -7 305 1 26 52 0 17 chr6 68858992 68859021 -113556221 + AT_rich Low_complexity Low_complexity 28 57 0 22 56 0 0 chr6 68859169 68859205 -113556037 + AT_rich Low_complexity Low_complexity 1 36 0 7600 24 0 0 chr6 68859331 68860908 -113554334 - L1PA2 LINE L1 -2 6153 4579 960 311 110 10 chr6 68861168 68861586 -113553656 + LTR16B LTR ERVL 1 460 -4 831 257 86 58 chr6 68862098 68862526 -113552716 + L1ME3A LINE L1 5731 6170 0 229 314 192 20 chr6 68862698 68862981 -113552261 + L2 LINE L2 2741 3077 -195 433 236 11 40 chr6 68863155 68863311 -113551931 - L1MD3 LINE L1 -38 7929 6194 2239 66 3 66 chr6 68865792 68866112 -113549130 + AluY SINE Alu 1 300 -11 282 73 0 0 chr6 68866137 68866178 -113549064 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 284 339 76 17 chr6 68867079 68867197 -113548045 + MIR SINE MIR 17 141 -121 449 376 30 39 chr6 68867560 68867924 -113547318 - L2 LINE L2 -920 2394 2034 363 187 252 9 chr6 68868048 68868155 -113547087 - MLT2C1 LTR ERVL -149 248 116 5560 236 42 4 chr6 68868160 68869372 -113545870 + L1M2 LINE L1 1 1258 -5591 21 0 0 0 chr6 68869568 68869589 -113545653 + AT_rich Low_complexity Low_complexity 1 21 0 1763 116 89 0 chr6 68871498 68871780 -113543462 + AluSx SINE Alu 3 307 0 200 285 160 83 chr6 68871781 68871925 -113543317 + MIR3 SINE MIR 45 199 -9 479 272 51 59 chr6 68872189 68872443 -113542799 + L1ME LINE L1 5454 5705 -459 180 0 0 0 chr6 68872444 68872464 -113542778 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1344 196 0 29 chr6 68872471 68872751 -113542491 - AluJb SINE Alu 0 312 41 24 0 0 0 chr6 68872764 68872788 -113542454 + AT_rich Low_complexity Low_complexity 1 24 0 392 168 70 13 chr6 68872814 68872902 -113542340 + (TA)n Simple_repeat Simple_repeat 1 83 -812 1876 167 0 3 chr6 68872902 68873196 -113542046 + AluSx SINE Alu 1 293 -19 392 168 70 13 chr6 68873196 68873661 -113541581 + (TA)n Simple_repeat Simple_repeat 83 895 0 34 0 0 0 chr6 68873666 68873700 -113541542 + AT_rich Low_complexity Low_complexity 1 34 0 39 22 0 0 chr6 68874153 68874199 -113541043 + AT_rich Low_complexity Low_complexity 1 46 0 3833 31 4 0 chr6 68874686 68875143 -113540099 + L1PA4 LINE L1 5697 6155 0 728 288 76 54 chr6 68876828 68877695 -113537547 + L1MEc LINE L1 705 1561 -4654 1876 67 0 16 chr6 68877704 68877958 -113537284 - L1PA4 LINE L1 -3 6152 5903 7425 49 0 3 chr6 68877960 68878897 -113536345 - L1P LINE L1 -1470 4676 3743 4364 42 0 0 chr6 68878896 68879438 -113535804 + L1P LINE L1 3202 3743 -2403 * 218 136 23 0 chr6 68879532 68879576 -113535666 + (TA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr6 68879611 68879632 -113535610 + AT_rich Low_complexity Low_complexity 1 21 0 292 208 164 38 chr6 68879632 68879791 -113535451 + L1MEc LINE L1 1624 1802 -4594 189 0 0 0 chr6 68880347 68880368 -113534874 + (TG)n Simple_repeat Simple_repeat 2 22 0 2371 70 0 3 chr6 68880630 68880930 -113534312 + AluY SINE Alu 1 299 -12 364 210 5 43 chr6 68881008 68881194 -113534048 + T-rich Low_complexity Low_complexity 1 179 0 567 228 34 0 chr6 68881895 68882044 -113533198 - Charlie1 DNA MER1_type -1 2760 2607 237 159 175 16 chr6 68882062 68882125 -113533117 - L1MB2 LINE L1 -22 6149 6077 23 54 0 0 chr6 68882232 68882269 -113532973 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr6 68882324 68882361 -113532881 + AT_rich Low_complexity Low_complexity 1 37 0 917 216 5 5 chr6 68882396 68882600 -113532642 - Charlie1 DNA MER1_type -248 2513 2310 287 202 141 20 chr6 68882602 68882701 -113532541 - Charlie1 DNA MER1_type -2595 166 56 23 33 0 0 chr6 68883021 68883051 -113532191 + AT_rich Low_complexity Low_complexity 1 30 0 3417 173 23 5 chr6 68883053 68883712 -113531530 - L1MB2 LINE L1 -2 6169 5499 2164 142 0 0 chr6 68883715 68884024 -113531218 - AluSx SINE Alu -1 311 3 674 248 13 13 chr6 68884037 68884194 -113531048 - LTR1 LTR ERV1 -628 157 1 8222 246 41 22 chr6 68884198 68884707 -113530535 - L1MB2 LINE L1 -1353 4793 4295 381 43 0 0 chr6 68884707 68884754 -113530488 + (TG)n Simple_repeat Simple_repeat 2 48 0 8222 246 41 22 chr6 68884754 68886874 -113528368 - L1MB2 LINE L1 -1851 4295 2113 23 0 0 0 chr6 68886880 68886903 -113528339 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr6 68887064 68887099 -113528143 + AT_rich Low_complexity Low_complexity 1 35 0 206 27 123 14 chr6 68888087 68888160 -113527082 + (TA)n Simple_repeat Simple_repeat 2 82 0 355 246 33 1 chr6 68888162 68888305 -113526937 - L1 LINE L1 -3793 2353 2208 227 73 73 0 chr6 68888305 68888360 -113526882 + (TA)n Simple_repeat Simple_repeat 1 59 0 23 54 0 0 chr6 68889512 68889549 -113525693 + AT_rich Low_complexity Low_complexity 1 37 0 323 179 145 17 chr6 68889549 68889666 -113525576 + L1ME4a LINE L1 5978 6109 -12 255 317 48 10 chr6 68890633 68890737 -113524505 + MIR SINE MIR 59 166 -96 519 269 181 0 chr6 68891352 68891523 -113523719 + MIR SINE MIR 12 213 -49 199 205 51 0 chr6 68891539 68891578 -113523664 + MIR SINE MIR 113 153 -55 22 0 0 0 chr6 68891753 68891775 -113523467 + AT_rich Low_complexity Low_complexity 1 22 0 203 213 85 0 chr6 68891838 68891885 -113523357 - L2 LINE L2 -12 3301 3251 2043 144 3 7 chr6 68892504 68892810 -113522432 - AluSx SINE Alu -3 309 5 25 65 0 0 chr6 68892905 68892951 -113522291 + AT_rich Low_complexity Low_complexity 1 46 0 1139 168 164 48 chr6 68893025 68893293 -113521949 + AluJo SINE Alu 8 306 -6 592 252 7 0 chr6 68893605 68893744 -113521498 + MIR SINE MIR 66 205 -57 921 235 104 0 chr6 68893800 68894068 -113521174 + MER63B DNA MER1_type 4 299 -137 238 336 27 18 chr6 68894669 68894779 -113520463 - MLT1K LTR MaLR -326 262 152 1320 331 66 20 chr6 68894960 68895642 -113519600 + L3 LINE CR1 672 1384 -193 1919 91 65 23 chr6 68895786 68896093 -113519149 - L1PA10 LINE L1 -3 6165 5846 30 69 0 0 chr6 68896261 68896319 -113518923 + AT_rich Low_complexity Low_complexity 1 58 0 1988 250 99 37 chr6 68896381 68897118 -113518124 - L1ME1 LINE L1 -5 6161 5379 205 149 43 0 chr6 68897262 68897309 -113517933 + A-rich Low_complexity Low_complexity 2 50 0 273 109 0 0 chr6 68897549 68897595 -113517647 + (TA)n Simple_repeat Simple_repeat 1 46 0 273 157 60 96 chr6 68897631 68897714 -113517528 - MIR SINE MIR -114 148 69 31 68 0 0 chr6 68898688 68898747 -113516495 + AT_rich Low_complexity Low_complexity 1 59 0 843 332 97 14 chr6 68898912 68899452 -113515790 - L2 LINE L2 -232 3081 2488 4361 145 61 46 chr6 68899559 68900413 -113514829 - MER4D LTR ERV1 -33 870 4 525 341 98 19 chr6 68900414 68900781 -113514461 - L2 LINE L2 -1015 2299 1904 1897 233 122 30 chr6 68901271 68901838 -113513404 + MER50 LTR ERV1 1 619 -115 1737 145 96 19 chr6 68901986 68902310 -113512932 - THE1B LTR MaLR -15 349 1 11350 109 4 0 chr6 68902310 68903884 -113511358 - THE1B-int LTR MaLR 0 1580 1 1755 153 137 3 chr6 68903884 68904205 -113511037 - THE1B LTR MaLR 0 364 1 4248 282 25 41 chr6 68904205 68905558 -113509684 + MER50-int LTR ERV1 119 1450 -5755 288 177 48 16 chr6 68905762 68905824 -113509418 + MER50-int LTR ERV1 1555 1618 -5587 522 247 87 27 chr6 68905910 68906060 -113509182 + MER50-int LTR ERV1 1634 1792 -5413 1841 155 144 13 chr6 68906223 68906598 -113508644 + MSTA LTR MaLR 1 424 -4 4120 200 39 1 chr6 68906602 68907418 -113507824 + MSTA-int LTR MaLR 1 847 -804 14999 193 40 32 chr6 68907422 68910468 -113504774 + MER21-int LTR ERV1 502 3573 -618 1614 212 7 0 chr6 68910468 68910774 -113504468 - AluJb SINE Alu -2 310 3 14999 193 40 32 chr6 68910774 68910803 -113504439 + MER21-int LTR ERV1 3573 3600 -591 1942 171 46 14 chr6 68910820 68911170 -113504072 + MER21B LTR ERV1 134 494 -369 25 0 0 0 chr6 68911659 68911684 -113503558 + AT_rich Low_complexity Low_complexity 1 25 0 543 365 50 29 chr6 68914086 68914470 -113500772 - L2 LINE L2 -1 3312 2921 2092 188 5 7 chr6 68914749 68915180 -113500062 + L1MB3 LINE L1 5754 6183 0 964 211 47 13 chr6 68916262 68916494 -113498748 - MSTB1 LTR MaLR 0 432 193 497 213 9 0 chr6 68916494 68916602 -113498640 - L1PA16 LINE L1 -4 6162 6054 358 227 0 0 chr6 68916602 68916677 -113498565 + L1P4 LINE L1 5560 5634 -531 250 235 15 29 chr6 68916732 68916800 -113498442 + GA-rich Low_complexity Low_complexity 1 67 0 1062 214 78 0 chr6 68916805 68917062 -113498180 - MSTB1 LTR MaLR -155 277 1 741 326 148 22 chr6 68917081 68917710 -113497532 + L2 LINE L2 1157 1864 -1450 4471 186 35 9 chr6 68917935 68918846 -113496396 + L1MA7 LINE L1 5346 6280 -11 728 345 50 38 chr6 68920516 68921011 -113494231 - MERVL LTR ERVL -1226 4538 4038 2354 118 6 11 chr6 68921051 68921407 -113493835 - THE1A LTR MaLR 0 355 2 5194 114 17 0 chr6 68921408 68922124 -113493118 - THE1A-int LTR MaLR 0 1580 853 1235 216 7 16 chr6 68922125 68922435 -113492807 + L1M4 LINE L1 3879 4185 -1961 1073 276 7 1 chr6 68922440 68922785 -113492457 - L1 LINE L1 -3531 2615 2270 3303 184 25 57 chr6 68922829 68923050 -113492192 - L1MB1 LINE L1 -339 5829 5602 243 0 0 0 chr6 68923050 68923077 -113492165 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2099 90 4 4 chr6 68923082 68923360 -113491882 - AluSc SINE Alu -30 279 2 3303 184 25 57 chr6 68923360 68924466 -113490776 - L1MB1 LINE L1 -570 5598 4538 1091 185 99 99 chr6 68924480 68925007 -113490235 + L1 LINE L1 3915 4443 -1703 391 314 21 26 chr6 68925015 68925209 -113490033 - MERVL LTR ERVL -2925 2560 2368 630 228 50 40 chr6 68925418 68925620 -113489622 - MER3 DNA MER1_type -5 204 1 2595 78 131 0 chr6 68925651 68926047 -113489195 - LTR7 LTR ERV1 -2 448 1 22522 58 2 2 chr6 68926047 68929169 -113486073 - HERVH LTR ERV1 0 7713 4593 5598 83 6 19 chr6 68929156 68929961 -113485281 - HERVH LTR ERV1 -5850 1863 1069 * 6215 111 74 7 chr6 68930072 68931146 -113484096 - HERVH LTR ERV1 -6568 1145 1 2831 93 29 31 chr6 68931148 68931597 -113483645 - LTR7 LTR ERV1 -2 448 1 2929 60 3 0 chr6 68931720 68932088 -113483154 + L1PA5 LINE L1 5778 6146 -8 23 0 0 0 chr6 68932088 68932111 -113483131 + AT_rich Low_complexity Low_complexity 1 23 0 274 194 32 0 chr6 68933001 68933063 -113482179 + MER117 DNA MER1_type 45 108 -89 372 232 0 0 chr6 68933223 68933322 -113481920 + (CATATA)n Simple_repeat Simple_repeat 2 100 0 198 0 0 0 chr6 68933325 68933347 -113481895 + (TG)n Simple_repeat Simple_repeat 2 23 0 21 36 0 0 chr6 68935137 68935165 -113480077 + AT_rich Low_complexity Low_complexity 1 28 0 309 289 155 21 chr6 68935522 68935716 -113479526 - L1ME LINE L1 -595 5569 5350 257 191 95 0 chr6 68937257 68937320 -113477922 + CT-rich Low_complexity Low_complexity 3 71 0 1946 154 51 26 chr6 68937387 68937737 -113477505 - THE1B LTR MaLR -5 359 1 1640 26 0 0 chr6 68938884 68939078 -113476164 - L1PA3 LINE L1 -1043 5103 4910 7606 29 0 0 chr6 68939078 68940114 -113475128 + L1PA3 LINE L1 5112 6147 -8 1359 237 28 16 chr6 68941090 68941308 -113473934 + Tigger6 DNA MER2_type 2 227 -856 6638 140 46 12 chr6 68941308 68942497 -113472745 + Tigger3b DNA MER2_type 1 1230 -1 1359 237 28 16 chr6 68942497 68942595 -113472647 + Tigger6 DNA MER2_type 227 322 -761 253 276 29 19 chr6 68942625 68942730 -113472512 + Tigger7 DNA MER2_type 1226 1331 -1156 * 263 328 41 8 chr6 68942706 68942828 -113472414 + Tigger3(Golem) DNA MER2_type 1441 1566 -1463 255 31 0 0 chr6 68942828 68942860 -113472382 + (T)n Simple_repeat Simple_repeat 1 32 0 2475 198 57 27 chr6 68942996 68943626 -113471616 + Tigger6 DNA MER2_type 948 1596 -1 1780 161 10 3 chr6 68944636 68944946 -113470296 - MER44D DNA MER2_type -27 582 1 2131 92 7 0 chr6 68945078 68945362 -113469880 - AluY SINE Alu -1 310 25 1784 160 3 10 chr6 68945543 68945849 -113469393 + AluSx SINE Alu 1 304 -8 186 195 0 0 chr6 68946718 68946759 -113468483 - L2 LINE L2 0 3313 3273 2091 87 0 40 chr6 68947316 68947616 -113467626 + AluSp SINE Alu 1 288 -25 1668 164 0 48 chr6 68947875 68948185 -113467057 - AluJo SINE Alu -17 295 1 250 88 0 0 chr6 68948418 68948452 -113466790 + Tigger6 DNA MER2_type 1463 1496 -101 193 208 83 0 chr6 68949801 68949849 -113465393 - L2 LINE L2 0 3313 3262 24 77 0 0 chr6 68950745 68950797 -113464445 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr6 68951288 68951309 -113463933 + AT_rich Low_complexity Low_complexity 1 21 0 30 97 0 0 chr6 68951721 68951814 -113463428 + AT_rich Low_complexity Low_complexity 1 93 0 2142 101 3 3 chr6 68951897 68952183 -113463059 + AluSg SINE Alu 1 286 -24 204 67 0 0 chr6 68952198 68952228 -113463014 + (CTAA)n Simple_repeat Simple_repeat 3 32 0 184 267 35 70 chr6 68952628 68952714 -113462528 + MIR SINE MIR 107 189 -73 227 264 83 0 chr6 68952920 68952992 -113462250 + MLT1K LTR MaLR 391 468 -120 641 252 7 2 chr6 68953664 68953842 -113461400 - MSTC LTR MaLR -184 181 1 243 337 42 11 chr6 68954042 68954137 -113461105 + MIR3 SINE MIR 60 157 -51 827 255 160 29 chr6 68954533 68955148 -113460094 - LTR50 LTR ERVL -4 791 3 192 40 0 0 chr6 68955864 68955889 -113459353 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 28695 50 1 8 chr6 68955889 68960198 -113455044 - L1HS LINE L1 -18 6137 1868 2941 82 0 0 chr6 68960197 68960574 -113454668 - L1HS LINE L1 -5763 383 7 * 5717 100 31 37 chr6 68960637 68961570 -113453672 - L1PA13 LINE L1 -2 6161 5235 319 287 43 17 chr6 68961673 68961733 -113453509 - MER58A DNA MER1_type -220 121 64 318 50 0 0 chr6 68961733 68961773 -113453469 + (CAA)n Simple_repeat Simple_repeat 3 42 0 319 287 43 17 chr6 68961773 68961827 -113453415 - MER58A DNA MER1_type -277 64 4 2085 60 0 0 chr6 68961939 68962188 -113453054 + AluY SINE Alu 1 249 -62 849 291 71 45 chr6 68963353 68963909 -113451333 + L2 LINE L2 2752 3310 -3 26 50 0 0 chr6 68966368 68966408 -113448834 + AT_rich Low_complexity Low_complexity 1 40 0 1734 234 104 42 chr6 69017051 69018805 -113396437 + SATR1 Satellite Satellite 1 1862 -338 668 252 89 50 chr6 69018975 69019616 -113395626 - SATR1 Satellite Satellite 0 666 1 443 273 0 39 chr6 69020144 69020349 -113394893 - SATR1 Satellite Satellite -131 339 143 1719 231 124 21 chr6 69020568 69021436 -113393806 - SATR1 Satellite Satellite 0 957 1 2159 236 107 2 chr6 69021464 69022338 -113392904 - SATR1 Satellite Satellite -2 966 1 2123 199 114 7 chr6 69022353 69022941 -113392301 - SATR1 Satellite Satellite -1 651 1 2340 177 120 23 chr6 69022968 69025390 -113389852 - SATR1 Satellite Satellite -28 2656 1 1978 222 92 7 chr6 69025409 69025958 -113389284 - SATR1 Satellite Satellite -3 595 1 2365 178 106 2 chr6 69026501 69027908 -113387334 - SATR1 Satellite Satellite -1 1553 1 1932 202 130 9 chr6 69027942 69028579 -113386663 - SATR1 Satellite Satellite -2 713 1 2281 190 101 0 chr6 69028607 69029412 -113385830 - SATR1 Satellite Satellite 0 885 1 2298 185 102 14 chr6 69029448 69032068 -113383174 - SATR1 Satellite Satellite -4 2851 1 1523 198 40 33 chr6 69032068 69032574 -113382668 + LTR22 LTR ERVK 1 577 -3 2070 192 103 19 chr6 69032607 69034616 -113380626 + SATR1 Satellite Satellite 1 2179 -131 1981 191 92 65 chr6 69034627 69036374 -113378868 + SATR1 Satellite Satellite 1 1794 -143 1990 207 112 12 chr6 69036483 69038512 -113376730 - SATR1 Satellite Satellite -1 2232 1 2115 176 106 6 chr6 69038542 69040604 -113374638 - SATR1 Satellite Satellite -3 2268 1 2057 187 108 17 chr6 69040632 69043587 -113371655 + SATR1 Satellite Satellite 1 3224 -7 1627 214 126 2 chr6 69043627 69044033 -113371209 + SATR1 Satellite Satellite 6 461 -9 2133 198 104 7 chr6 69044071 69050182 -113365060 + SATR1 Satellite Satellite 1 6704 0 2282 185 99 9 chr6 69050211 69054079 -113361163 + SATR1 Satellite Satellite 1 4216 0 2253 169 97 21 chr6 69054107 69056208 -113359034 + SATR1 Satellite Satellite 1 2262 0 1963 187 122 11 chr6 69056237 69056945 -113358297 + SATR1 Satellite Satellite 1 786 -15 968 220 80 67 chr6 69057123 69057613 -113357629 + HsTC2 DNA Tc2 1337 1832 -66 458 245 18 74 chr6 69058416 69058579 -113356663 - MIR SINE MIR -13 249 96 231 313 0 0 chr6 69059076 69059156 -113356086 + GA-rich Low_complexity Low_complexity 2 81 0 186 189 0 0 chr6 69059174 69059211 -113356031 + GA-rich Low_complexity Low_complexity 4 40 0 2063 187 109 15 chr6 69059354 69062501 -113352741 - SATR1 Satellite Satellite 0 3441 1 274 244 25 134 chr6 69063287 69063442 -113351800 - L3 LINE CR1 -302 1275 1143 475 227 72 0 chr6 69063442 69063539 -113351703 + MER5B DNA MER1_type 1 104 -74 1357 169 113 37 chr6 69063546 69063872 -113351370 - MER101B LTR ERV1 0 570 220 346 153 208 0 chr6 69063877 69063949 -113351293 - MER101B LTR ERV1 -475 95 9 331 182 76 0 chr6 69063966 69064032 -113351210 + MER5B DNA MER1_type 108 178 0 376 107 107 68 chr6 69064375 69064432 -113350810 - LTR37A LTR ERV1 0 426 362 1874 158 164 0 chr6 69064432 69064798 -113350444 - MSTA LTR MaLR 0 428 3 376 107 107 68 chr6 69064798 69064843 -113350399 - LTR37A LTR ERV1 -64 362 320 562 170 130 81 chr6 69064872 69065095 -113350147 - LTR37A LTR ERV1 -170 256 23 2120 181 97 28 chr6 69065232 69066996 -113348246 - SATR1 Satellite Satellite -18 1885 1 2095 164 109 10 chr6 69067833 69069163 -113346079 - SATR1 Satellite Satellite 0 1460 1 2277 177 103 14 chr6 69069198 69073225 -113342017 - SATR1 Satellite Satellite 0 4385 1 4652 41 0 1 chr6 69073328 69074094 -113341148 + L1P2 LINE L1 4798 5562 -592 1324 230 53 12 chr6 69074103 69074633 -113340609 + L1MEc LINE L1 2168 2677 -3538 21 0 0 0 chr6 69074937 69074958 -113340284 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr6 69075802 69075845 -113339397 + AT_rich Low_complexity Low_complexity 1 43 0 338 99 99 0 chr6 69075946 69076108 -113339134 + (TA)n Simple_repeat Simple_repeat 2 179 0 1458 247 41 30 chr6 69076871 69077413 -113337829 + L1MD1 LINE L1 5378 5925 -317 368 318 46 0 chr6 69077561 69077734 -113337508 + L1ME1 LINE L1 5962 6142 -24 261 276 20 0 chr6 69077799 69077897 -113337345 + L1ME LINE L1 538 637 -6188 329 250 52 0 chr6 69077901 69077997 -113337245 + L1ME LINE L1 1501 1601 -5224 212 286 16 0 chr6 69078012 69078075 -113337167 + GA-rich Low_complexity Low_complexity 3 66 0 345 324 19 60 chr6 69078111 69078327 -113336915 + L1ME LINE L1 1444 1650 -4892 1705 137 50 28 chr6 69078329 69078651 -113336591 + THE1B LTR MaLR 2 330 -34 606 221 0 39 chr6 69078652 69078779 -113336463 + FLAM_A SINE Alu 2 123 -10 23 0 0 0 chr6 69078779 69078802 -113336440 + AT_rich Low_complexity Low_complexity 1 23 0 389 91 0 0 chr6 69078856 69078922 -113336320 - L1MA3 LINE L1 -1 6304 6239 19356 176 22 21 chr6 69078922 69085516 -113329726 - L1M1 LINE L1 -692 7032 12 8418 208 30 24 chr6 69085512 69087305 -113327937 - L1M3f LINE L1 -4289 2276 87 * 318 26 0 0 chr6 69087305 69087344 -113327898 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 8418 208 30 24 chr6 69087344 69087423 -113327819 - L1M3f LINE L1 -6478 87 10 627 228 140 39 chr6 69087427 69087449 -113327793 + L1ME LINE L1 2743 2761 -3883 2014 125 10 7 chr6 69087449 69087745 -113327497 + AluSg SINE Alu 3 299 -11 627 228 140 39 chr6 69087745 69088078 -113327164 + L1ME LINE L1 2761 3134 -3510 757 270 134 5 chr6 69088112 69088545 -113326697 + L1ME LINE L1 4741 5229 -1415 262 282 88 28 chr6 69088585 69088766 -113326476 + L1ME LINE L1 5377 5568 -1076 359 244 12 0 chr6 69088766 69088852 -113326390 + L1ME1 LINE L1 5749 5835 -331 2877 155 14 8 chr6 69088858 69089418 -113325824 + L1PB4 LINE L1 5200 5762 -394 262 284 0 0 chr6 69089421 69089488 -113325754 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 1538 161 4 8 chr6 69089488 69089742 -113325500 + L1PB4 LINE L1 5883 6135 -21 984 307 10 0 chr6 69089772 69090075 -113325167 + L1ME1 LINE L1 5858 6163 -3 743 185 123 51 chr6 69090499 69090791 -113324451 + MER33 DNA MER1_type 7 319 -5 1027 239 22 4 chr6 69090814 69091044 -113324198 + MLT1E2 LTR MaLR 1 234 -392 4131 228 50 63 chr6 69091080 69092512 -113322730 + L1MDa LINE L1 743 2154 -4386 321 330 101 25 chr6 69092756 69093111 -113322131 + L1ME LINE L1 5756 6137 -531 1815 154 35 0 chr6 69094760 69095045 -113320197 + AluSg SINE Alu 1 295 -15 396 319 213 26 chr6 69096057 69096564 -113318678 + L2 LINE L2 1904 2505 -809 205 359 13 0 chr6 69097518 69097596 -113317646 + MIR SINE MIR 82 160 -102 230 321 36 50 chr6 69099005 69099145 -113316097 - MIR SINE MIR -93 169 32 563 116 0 0 chr6 69099265 69099351 -113315891 + AluS SINE Alu 222 307 -2 383 352 14 0 chr6 69099416 69099558 -113315684 - MIR SINE MIR -9 253 110 514 286 107 21 chr6 69099565 69100018 -113315224 + LTR33 LTR ERVL 10 521 0 331 333 38 0 chr6 69100557 69100662 -113314580 - L2 LINE L2 -1 3312 3204 3915 127 57 14 chr6 69101168 69101875 -113313367 - L1MA4A LINE L1 -8 6295 5559 6142 200 21 16 chr6 69101890 69103676 -113311566 - L1 LINE L1 -2424 4424 2620 461 150 0 0 chr6 69103676 69103756 -113311486 - MADE1 DNA Mariner 0 80 1 6142 200 21 16 chr6 69103756 69104436 -113310806 - L1 LINE L1 -4228 2620 1945 2744 219 13 40 chr6 69104461 69105164 -113310078 - L1 LINE L1 -6001 848 3 507 224 122 63 chr6 69105486 69105741 -113309501 + L1MC4 LINE L1 7199 7468 -574 26 74 0 0 chr6 69105872 69105926 -113309316 + AT_rich Low_complexity Low_complexity 1 54 0 328 247 93 0 chr6 69106390 69106487 -113308755 - MIR SINE MIR -50 212 107 880 272 102 77 chr6 69110038 69110490 -113304752 + MLT2B1 LTR ERVL 1 463 -57 1059 253 22 4 chr6 69110527 69110756 -113304486 + MER8 DNA MER2_type 2 234 -5 333 0 0 0 chr6 69110762 69110799 -113304443 + (CA)n Simple_repeat Simple_repeat 2 38 0 434 289 89 13 chr6 69112002 69112195 -113303047 - MLT1H1 LTR MaLR 0 590 369 800 270 44 68 chr6 69112261 69112628 -113302614 - MLT1H1 LTR MaLR -185 370 13 1162 213 49 63 chr6 69112989 69113355 -113301887 - MLT1A1 LTR MaLR -4 361 1 21 0 0 0 chr6 69113464 69113485 -113301757 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 69114244 69114273 -113300969 + AT_rich Low_complexity Low_complexity 1 29 0 6640 68 13 0 chr6 69115088 69116473 -113298769 - L1PA7 LINE L1 -6 6148 4768 7827 243 67 29 chr6 69116621 69119284 -113295958 + L1PA13 LINE L1 1 2826 -3971 326 255 43 0 chr6 69119289 69119383 -113295859 + L1 LINE L1 3614 3711 -3086 580 295 84 12 chr6 69121711 69122074 -113293168 + L1MEc LINE L1 2241 2597 -3618 492 250 15 0 chr6 69122368 69122504 -113292738 - L1MCc LINE L1 -3615 3326 3189 1444 295 81 46 chr6 69122555 69124361 -113290881 - L1MCc LINE L1 -4394 2728 662 421 259 40 50 chr6 69124888 69125089 -113290153 - HAL1 LINE L1 -882 1625 1427 300 318 91 50 chr6 69125089 69125407 -113289835 - L1MCa LINE L1 -4964 1462 1132 1951 136 6 19 chr6 69125916 69126232 -113289010 - AluSx SINE Alu 0 312 1 1820 109 53 11 chr6 69127702 69127985 -113287257 + AluJb SINE Alu 1 295 -17 236 279 0 0 chr6 69128298 69128366 -113286876 + T-rich Low_complexity Low_complexity 1 68 0 294 343 49 0 chr6 69128993 69129136 -113286106 + MLT1J LTR MaLR 111 260 -251 2212 126 0 0 chr6 69129494 69129804 -113285438 + AluSg SINE Alu 1 310 0 415 315 9 0 chr6 69131130 69131238 -113284004 - MIR3 SINE MIR -13 195 87 233 326 51 20 chr6 69131421 69131519 -113283723 - MER5A DNA MER1_type -7 182 82 28 91 0 0 chr6 69131786 69131863 -113283379 + AT_rich Low_complexity Low_complexity 1 77 0 23 33 0 0 chr6 69131918 69131948 -113283294 + AT_rich Low_complexity Low_complexity 1 30 0 2914 219 35 13 chr6 69132936 69133019 -113282223 - L1MB8 LINE L1 -301 5877 5797 2035 135 0 10 chr6 69133019 69133330 -113281912 + AluSx SINE Alu 1 308 -4 2914 219 35 13 chr6 69133330 69134535 -113280707 - L1MB8 LINE L1 -381 5797 4557 445 215 19 0 chr6 69134532 69134639 -113280603 + L1M4 LINE L1 4324 4432 -1714 * 23 0 0 0 chr6 69134661 69134684 -113280558 + AT_rich Low_complexity Low_complexity 1 23 0 342 269 78 21 chr6 69134756 69134897 -113280345 - HAL1 LINE L1 -908 1599 1451 456 319 66 53 chr6 69134963 69135374 -113279868 - L1MEd LINE L1 -4862 1257 842 340 188 94 0 chr6 69135378 69135463 -113279779 + L1MA8 LINE L1 6197 6289 -2 314 270 62 28 chr6 69135476 69135654 -113279588 - L1MEd LINE L1 -5289 830 647 27 73 0 0 chr6 69136213 69136268 -113278974 + AT_rich Low_complexity Low_complexity 1 55 0 21 57 0 0 chr6 69136443 69136478 -113278764 + AT_rich Low_complexity Low_complexity 1 35 0 349 321 50 7 chr6 69136724 69136864 -113278378 - MIR SINE MIR -32 230 85 740 92 23 6 chr6 69137323 69137456 -113277786 - L1P LINE L1 -840 5306 5191 303 88 0 53 chr6 69137434 69137491 -113277751 + L1PA6 LINE L1 6101 6154 0 * 26 50 0 0 chr6 69137869 69137909 -113277333 + AT_rich Low_complexity Low_complexity 1 40 0 25 65 0 0 chr6 69138208 69138254 -113276988 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr6 69138963 69138986 -113276256 + AT_rich Low_complexity Low_complexity 1 23 0 669 151 17 73 chr6 69139605 69139784 -113275458 - L1MA10 LINE L1 -3 6331 6163 1781 158 145 16 chr6 69139795 69140174 -113275068 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr6 69140926 69140948 -113274294 + AT_rich Low_complexity Low_complexity 1 22 0 188 163 23 0 chr6 69141142 69141185 -113274057 + T-rich Low_complexity Low_complexity 2 45 0 4775 106 29 49 chr6 69141456 69142251 -113272991 - MER4E LTR ERV1 0 779 1 360 82 13 0 chr6 69142784 69142894 -113272348 - MADE1 DNA Mariner 0 80 1 1289 171 146 9 chr6 69142904 69143025 -113272217 - LTR37A LTR ERV1 -53 373 270 3903 58 14 0 chr6 69143025 69143508 -113271734 + LTR2B LTR ERV1 1 490 0 1289 171 146 9 chr6 69143508 69143708 -113271534 - LTR37A LTR ERV1 -156 270 8 312 159 159 29 chr6 69143735 69143803 -113271439 + Tigger5 DNA MER2_type 2 78 -2245 434 203 0 0 chr6 69143803 69143882 -113271360 - Tigger5 DNA MER2_type -3 2320 2242 405 213 0 0 chr6 69143874 69143954 -113271288 + Tigger5 DNA MER2_type 2244 2323 0 * 5820 161 12 11 chr6 69144645 69146042 -113269200 + L1M2 LINE L1 4247 5642 -658 34 24 0 0 chr6 69146353 69146394 -113268848 + AT_rich Low_complexity Low_complexity 1 41 0 2119 240 11 11 chr6 69146608 69147083 -113268159 + MLT1A2-int LTR MaLR 1253 1727 -8 1596 234 19 11 chr6 69147091 69147462 -113267780 + MLT1A2 LTR MaLR 1 374 0 277 311 38 28 chr6 69148106 69148212 -113267030 - MIR SINE MIR -120 142 36 1654 170 0 28 chr6 69148328 69148617 -113266625 + AluJo SINE Alu 1 281 -31 21 0 0 0 chr6 69148617 69148638 -113266604 + AT_rich Low_complexity Low_complexity 1 21 0 419 35 18 0 chr6 69148724 69148781 -113266461 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1613 155 0 48 chr6 69149074 69149383 -113265859 - L1MA7 LINE L1 -247 6044 5751 378 176 12 0 chr6 69149383 69149467 -113265775 + L1MA7 LINE L1 6204 6289 -2 21 36 0 0 chr6 69150170 69150198 -113265044 + AT_rich Low_complexity Low_complexity 1 28 0 195 69 0 0 chr6 69150343 69150372 -113264870 + (T)n Simple_repeat Simple_repeat 1 29 0 2263 56 0 11 chr6 69151135 69151464 -113263778 - AluY SINE Alu 0 326 1 23 33 0 0 chr6 69151473 69151503 -113263739 + AT_rich Low_complexity Low_complexity 1 30 0 409 293 78 36 chr6 69153076 69153206 -113262036 - MIR SINE MIR -63 199 59 2095 102 0 20 chr6 69153206 69153509 -113261733 + AluSg SINE Alu 1 297 -13 409 293 78 36 chr6 69153509 69153545 -113261697 - MIR SINE MIR -203 59 26 605 309 39 5 chr6 69153917 69154124 -113261118 + MIR SINE MIR 39 252 -10 22 56 0 0 chr6 69155720 69155756 -113259486 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 69155805 69155827 -113259415 + AT_rich Low_complexity Low_complexity 1 22 0 376 338 81 9 chr6 69156329 69156551 -113258691 + MIR SINE MIR 21 258 -4 24 0 0 0 chr6 69158433 69158457 -113256785 + AT_rich Low_complexity Low_complexity 1 24 0 525 73 107 4 chr6 69158457 69159309 -113255933 + (TA)n Simple_repeat Simple_repeat 1 939 0 21 0 0 0 chr6 69159313 69159334 -113255908 + AT_rich Low_complexity Low_complexity 1 21 0 537 96 93 4 chr6 69159334 69159606 -113255636 + (TA)n Simple_repeat Simple_repeat 1 296 0 853 293 103 42 chr6 69159679 69160184 -113255058 + MLT1F LTR MaLR 7 542 0 22 0 0 0 chr6 69162131 69162153 -113253089 + AT_rich Low_complexity Low_complexity 1 22 0 185 310 17 0 chr6 69162698 69162756 -113252486 - MIR SINE MIR -15 247 189 1829 164 15 69 chr6 69162839 69163247 -113251995 - MLT1B LTR MaLR -4 386 1 22 0 0 0 chr6 69163577 69163599 -113251643 + AT_rich Low_complexity Low_complexity 1 22 0 2369 173 58 0 chr6 69163905 69164372 -113250870 - L1MC1 LINE L1 0 6333 5840 1466 159 110 6 chr6 69164375 69164720 -113250522 - L1MCa LINE L1 -4824 1602 1222 440 361 25 8 chr6 69165063 69165304 -113249938 + LTR16A LTR ERVL 206 450 0 254 307 45 34 chr6 69165790 69165969 -113249273 + L1MCa LINE L1 18 198 -6228 1259 178 35 18 chr6 69166547 69166833 -113248409 - L1MCa LINE L1 -4016 2410 2120 228 182 0 0 chr6 69166882 69166926 -113248316 + (TG)n Simple_repeat Simple_repeat 2 45 0 1179 274 95 23 chr6 69166933 69167679 -113247563 + L1MCa LINE L1 1665 2464 -4143 2679 159 17 0 chr6 69167681 69168097 -113247145 - MSTA LTR MaLR -5 423 1 245 274 69 0 chr6 69168097 69168199 -113247043 + L1MCa LINE L1 2420 2528 -3898 182 36 0 36 chr6 69168201 69168229 -113247013 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1763 132 4 14 chr6 69168229 69168510 -113246732 - L1PB1 LINE L1 -5 6862 6585 2054 91 17 5 chr6 69168510 69168865 -113246377 + LTR7 LTR ERV1 1 448 -2 14707 118 17 29 chr6 69168867 69171763 -113243479 + HERVH LTR ERV1 1 2995 -4718 869 167 7 0 chr6 69171742 69171892 -113243350 + HERVH LTR ERV1 3140 3290 -4423 * 1546 141 8 4 chr6 69171882 69172124 -113243118 + HERVH LTR ERV1 3492 3734 -3979 7680 110 24 11 chr6 69172136 69173289 -113241953 + HERVH LTR ERV1 3994 5149 -2564 1400 125 19 0 chr6 69173290 69173506 -113241736 + HERVH LTR ERV1 5600 5819 -1894 * 2118 127 53 13 chr6 69173504 69173881 -113241361 + HERVH LTR ERV1 7322 7713 0 2707 91 95 0 chr6 69173881 69174290 -113240952 + LTR7 LTR ERV1 1 448 -2 512 118 0 0 chr6 69174291 69174367 -113240875 - L1PB1 LINE L1 -278 6589 6514 * 16766 179 35 11 chr6 69174360 69175362 -113239880 - L1PB1 LINE L1 -657 6210 5234 221 75 25 0 chr6 69175362 69175402 -113239840 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 16766 179 35 11 chr6 69175402 69175448 -113239794 - L1PB1 LINE L1 -1633 5234 5191 282 56 0 0 chr6 69175448 69175484 -113239758 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 16766 179 35 11 chr6 69175484 69176964 -113238278 - L1PB1 LINE L1 -1676 5191 3748 1937 154 3 3 chr6 69176964 69177263 -113237979 - AluSx SINE Alu -11 301 3 16766 179 35 11 chr6 69177263 69180791 -113234451 - L1PB1 LINE L1 -3119 3748 1 1597 237 50 51 chr6 69180825 69182164 -113233078 + L1MD3 LINE L1 6559 7987 -8 200 173 19 19 chr6 69183259 69183311 -113231931 + (TTA)n Simple_repeat Simple_repeat 1 52 0 1115 211 133 33 chr6 69183904 69184236 -113231006 + MLT1A1 LTR MaLR 1 365 0 35 33 0 17 chr6 69186128 69186148 -113229094 + AT_rich Low_complexity Low_complexity 1 20 -39 945 9 0 0 chr6 69186148 69186257 -113228985 + L1PA2 LINE L1 6046 6154 -1 35 33 0 17 chr6 69186257 69186296 -113228946 + AT_rich Low_complexity Low_complexity 20 59 0 22 35 0 0 chr6 69186331 69186360 -113228882 + AT_rich Low_complexity Low_complexity 1 29 0 322 303 46 20 chr6 69186680 69186832 -113228410 + LTR68 LTR ERV1 278 433 -307 1676 172 46 30 chr6 69186933 69187300 -113227942 - THE1C LTR MaLR -2 373 1 270 356 30 23 chr6 69187501 69187633 -113227609 - MIR SINE MIR -95 167 35 420 266 14 127 chr6 69188374 69188798 -113226444 + HAL1b LINE L1 109 484 -864 447 238 19 138 chr6 69188888 69189199 -113226043 - MER46C DNA MER2_type -41 297 24 189 147 0 0 chr6 69189499 69189533 -113225709 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 26 0 0 0 chr6 69189551 69189577 -113225665 + AT_rich Low_complexity Low_complexity 1 26 0 300 274 85 19 chr6 69189971 69190077 -113225165 + HAL1b LINE L1 1153 1265 -83 673 335 77 37 chr6 69190137 69190814 -113224428 + L1M4 LINE L1 2456 3159 -2987 361 336 65 47 chr6 69191216 69191493 -113223749 + L1M4 LINE L1 3607 3888 -2258 25 0 0 0 chr6 69191703 69191728 -113223514 + AT_rich Low_complexity Low_complexity 1 25 0 246 351 0 0 chr6 69192068 69192142 -113223100 - MIR SINE MIR -128 134 61 10526 52 15 1 chr6 69192522 69194644 -113220598 - L1PA6 LINE L1 -3 6151 4010 7300 140 17 0 chr6 69194644 69195763 -113219479 - L1P LINE L1 -5008 1138 1 28 29 0 0 chr6 69197086 69197121 -113218121 + AT_rich Low_complexity Low_complexity 1 35 0 572 255 115 20 chr6 69197254 69197568 -113217674 - MLT1A2 LTR MaLR 0 374 3 183 80 0 0 chr6 69197588 69197613 -113217629 + (TATG)n Simple_repeat Simple_repeat 4 28 0 2037 117 10 17 chr6 69198445 69198745 -113216497 + AluSp SINE Alu 1 298 -15 2109 130 0 0 chr6 69199354 69199662 -113215580 - AluSc SINE Alu -1 308 1 1511 223 18 89 chr6 69200716 69201392 -113213850 + LTR9 LTR ERV1 1 777 -2 581 268 105 26 chr6 69201412 69201640 -113213602 - MLT1L LTR MaLR -369 246 1 293 319 44 18 chr6 69201640 69201753 -113213489 + L2 LINE L2 3194 3309 -4 1277 152 289 18 chr6 69201857 69202339 -113212903 + MER4A LTR ERV1 1 663 -1 1020 221 30 34 chr6 69202357 69202655 -113212587 + AluJb SINE Alu 2 298 -4 729 304 53 12 chr6 69202693 69202940 -113212302 + L2 LINE L2 1873 2129 -1185 5778 102 10 62 chr6 69202941 69203535 -113211707 + L1P LINE L1 4079 4605 -1541 19570 35 3 1 chr6 69203535 69206701 -113208541 - L1PA4 LINE L1 -8 6147 2977 5778 102 10 62 chr6 69206701 69207078 -113208164 + L1P LINE L1 4605 5000 -1146 256 164 0 0 chr6 69207349 69207404 -113207838 + C-rich Low_complexity Low_complexity 1 55 0 211 146 12 73 chr6 69207502 69207584 -113207658 + C-rich Low_complexity Low_complexity 2 78 0 17697 38 1 1 chr6 69207594 69209778 -113205464 - L1P LINE L1 -985 5161 2977 4280 121 15 1 chr6 69209777 69210446 -113204796 + L1P LINE L1 4615 5292 -854 * 251 148 74 37 chr6 69310554 69310608 -113104634 - MLT1L LTR MaLR -55 560 505 4494 76 52 9 chr6 69311354 69311987 -113103255 - PABL_A LTR ERV1 0 660 1 41 30 0 15 chr6 69312001 69312025 -113103217 + AT_rich Low_complexity Low_complexity 1 24 -41 2004 134 0 7 chr6 69312025 69312317 -113102925 + AluSx SINE Alu 1 290 -22 41 30 0 15 chr6 69312317 69312358 -113102884 + AT_rich Low_complexity Low_complexity 24 65 0 24 0 0 0 chr6 69312693 69312717 -113102525 + AT_rich Low_complexity Low_complexity 1 24 0 3625 90 12 4 chr6 69312851 69313360 -113101882 - LTR10D LTR ERV1 0 513 1 24 107 0 0 chr6 69314672 69314728 -113100514 + AT_rich Low_complexity Low_complexity 1 56 0 27 62 0 0 chr6 69314891 69314939 -113100303 + AT_rich Low_complexity Low_complexity 1 48 0 6728 26 1 12 chr6 69315038 69315849 -113099393 - L1PA3 LINE L1 -1 6154 5353 * 12367 40 3 0 chr6 69315848 69317386 -113097856 + L1P LINE L1 3809 5357 -797 26 82 0 0 chr6 69317520 69317581 -113097661 + AT_rich Low_complexity Low_complexity 1 61 0 21 36 0 0 chr6 69318331 69318359 -113096883 + AT_rich Low_complexity Low_complexity 1 28 0 1921 106 11 9 chr6 69319211 69319601 -113095641 + LTR7 LTR ERV1 1 442 -8 2734 167 34 27 chr6 69319609 69320201 -113095041 + HERVH LTR ERV1 1 559 -7154 524 184 0 0 chr6 69320309 69320396 -113094846 + HERVH LTR ERV1 2897 2983 -4730 7920 128 5 4 chr6 69320398 69322100 -113093142 + HERVH LTR ERV1 3507 5286 -1805 1435 127 5 5 chr6 69322104 69322324 -113092918 + HERVH LTR ERV1 5600 5819 -1894 1307 121 10 0 chr6 69322328 69322534 -113092708 + HERVH LTR ERV1 7328 7535 -178 809 83 28 35 chr6 69322638 69322782 -113092460 + HERVH LTR ERV1 7571 7713 0 2220 95 132 37 chr6 69322782 69323191 -113092051 + LTR7 LTR ERV1 1 448 -2 298 278 116 58 chr6 69323841 69324014 -113091228 - LTR33 LTR ERVL -323 198 16 21 0 0 0 chr6 69324030 69324051 -113091191 + AT_rich Low_complexity Low_complexity 1 21 0 956 139 4 107 chr6 69324165 69324437 -113090805 - MER4A LTR ERV1 -101 563 261 672 101 0 10 chr6 69324437 69324536 -113090706 - MER4A LTR ERV1 -566 98 1 23 0 0 0 chr6 69325126 69325149 -113090093 + AT_rich Low_complexity Low_complexity 1 23 0 291 130 19 0 chr6 69325396 69325450 -113089792 - L1MA3 LINE L1 0 6305 6251 1056 112 31 41 chr6 69325469 69325665 -113089577 - L1MA1 LINE L1 -137 6165 5972 43 56 0 0 chr6 69327003 69327074 -113088168 + AT_rich Low_complexity Low_complexity 1 71 0 184 339 32 0 chr6 69327074 69327136 -113088106 - L2 LINE L2 -4 3309 3246 2471 174 9 80 chr6 69327582 69328106 -113087136 + Tigger1 DNA MER2_type 1 487 -1931 2182 110 3 0 chr6 69328109 69328399 -113086843 + AluSg SINE Alu 3 293 -17 3879 120 3 2 chr6 69328406 69328984 -113086258 + Tigger1 DNA MER2_type 1198 1776 -642 2085 169 95 0 chr6 69328984 69329375 -113085867 + MSTA LTR MaLR 1 428 0 3461 141 68 5 chr6 69329377 69329982 -113085260 + Tigger1 DNA MER2_type 1775 2417 -1 189 147 0 0 chr6 69330036 69330070 -113085172 + (TA)n Simple_repeat Simple_repeat 1 34 0 560 195 115 0 chr6 69330070 69330183 -113085059 - FLAM_C SINE Alu -14 129 4 222 37 0 0 chr6 69330516 69330543 -113084699 + (TG)n Simple_repeat Simple_repeat 2 28 0 25 31 0 0 chr6 69331705 69331737 -113083505 + AT_rich Low_complexity Low_complexity 1 32 0 1701 181 107 28 chr6 69332648 69333041 -113082201 + MSTB LTR MaLR 1 424 -2 635 187 24 42 chr6 69333260 69333460 -113081782 + L1P LINE L1 5104 5283 -863 1061 163 51 51 chr6 69333613 69333870 -113081372 - Tigger2 DNA MER2_type 0 2718 2462 204 330 85 9 chr6 69335556 69335662 -113079580 + L2 LINE L2 3175 3288 -25 865 279 122 30 chr6 69335741 69336200 -113079042 + MLT1F1 LTR MaLR 67 567 0 768 222 107 23 chr6 69337984 69338200 -113077042 - MER31A LTR ERV1 -4 481 248 27 0 0 0 chr6 69338540 69338567 -113076675 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr6 69338660 69338685 -113076557 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr6 69339719 69339752 -113075490 + AT_rich Low_complexity Low_complexity 1 33 0 202 214 0 0 chr6 69339834 69339876 -113075366 + L2 LINE L2 3271 3312 -1 225 211 77 0 chr6 69340443 69340495 -113074747 + L2 LINE L2 3236 3291 -22 684 216 258 0 chr6 69340528 69340718 -113074524 + MIR SINE MIR 3 241 -21 5535 35 5 0 chr6 69340860 69341527 -113073715 - L1P LINE L1 -949 5197 4528 248 26 0 0 chr6 69341525 69341563 -113073679 + L1PA3 LINE L1 6115 6152 -3 * 302 250 48 10 chr6 69342121 69342225 -113073017 - HAL1b LINE L1 -7 1341 1234 2631 119 5 7 chr6 69342228 69342641 -113072601 - L1P LINE L1 -995 5151 4740 328 240 20 108 chr6 69342643 69342847 -113072395 - HAL1b LINE L1 -129 1219 1034 284 272 26 26 chr6 69342932 69343046 -113072196 - LTR67 LTR ERVL -15 542 429 321 244 122 45 chr6 69343632 69343878 -113071364 - HAL1b LINE L1 -867 481 217 2338 101 3 0 chr6 69343921 69344228 -113071014 - AluSp SINE Alu -4 309 2 524 270 12 64 chr6 69345509 69345735 -113069507 + MLT2C1 LTR ERVL 1 220 -194 978 204 41 5 chr6 69346301 69346497 -113068745 - MLT1D LTR MaLR -2 503 301 1999 146 3 0 chr6 69347118 69347412 -113067830 - AluSc SINE Alu -14 295 1 436 306 28 17 chr6 69347612 69347792 -113067450 - HERVL LTR ERVL -784 4870 4689 621 173 107 33 chr6 69348046 69348315 -113066927 - MLT1B LTR MaLR 0 390 1 215 233 0 0 chr6 69348921 69348964 -113066278 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 4012 118 9 5 chr6 69349104 69349741 -113065501 + L1MA2 LINE L1 5662 6301 -3 350 295 70 30 chr6 69349799 69349999 -113065243 - L1ME LINE L1 -373 5748 5541 181 164 0 33 chr6 69350006 69350067 -113065175 + (TAA)n Simple_repeat Simple_repeat 3 61 0 28 79 0 0 chr6 69350138 69350201 -113065041 + AT_rich Low_complexity Low_complexity 1 63 0 23131 90 14 0 chr6 69351376 69355191 -113060051 - L1PA7 LINE L1 0 6154 2285 252 0 0 0 chr6 69355191 69355219 -113060023 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 23131 90 14 0 chr6 69355219 69355501 -113059741 - L1PA7 LINE L1 -3869 2285 2008 5233 116 12 8 chr6 69355664 69356468 -113058774 - L1PA12 LINE L1 -1 6167 5360 1928 162 7 0 chr6 69356561 69356869 -113058373 + AluSx SINE Alu 2 311 -1 1553 153 59 47 chr6 69356911 69357250 -113057992 - MER2 DNA MER2_type 0 344 2 25 0 0 0 chr6 69357481 69357506 -113057736 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 69357608 69357643 -113057599 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 69357702 69357725 -113057517 + AT_rich Low_complexity Low_complexity 1 23 0 1586 197 13 22 chr6 69358638 69358953 -113056289 + AluJo SINE Alu 1 312 0 956 50 0 0 chr6 69359928 69360049 -113055193 + L1PA4 LINE L1 6032 6152 -3 27 0 0 0 chr6 69360350 69360377 -113054865 + AT_rich Low_complexity Low_complexity 1 27 0 2692 142 25 2 chr6 69360377 69360815 -113054427 - L1PA16 LINE L1 -9 6157 5710 1314 199 36 3 chr6 69360820 69361121 -113054121 - L1 LINE L1 -1401 4745 4435 480 231 83 41 chr6 69361312 69361481 -113053761 + MER5B DNA MER1_type 2 177 -1 1423 183 90 7 chr6 69361682 69361961 -113053281 + AluSx SINE Alu 1 302 -10 276 30 0 0 chr6 69361961 69361994 -113053248 + (CA)n Simple_repeat Simple_repeat 2 34 0 367 294 19 19 chr6 69362385 69362502 -113052740 - MIR SINE MIR -64 144 39 268 335 112 0 chr6 69362593 69362754 -113052488 - MIR SINE MIR -26 236 58 996 160 24 14 chr6 69362857 69363070 -113052172 - L1P LINE L1 -778 5368 5154 4446 118 12 1 chr6 69363475 69364152 -113051090 - L1PA12 LINE L1 -2 6166 5483 212 0 0 35 chr6 69364152 69364181 -113051061 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 332 111 19 0 chr6 69364183 69364237 -113051005 - L1PA12 LINE L1 -760 5401 5347 * 2786 173 20 27 chr6 69364235 69364831 -113050411 + L1P LINE L1 4608 5199 -947 * 31406 47 164 2 chr6 69364822 69369930 -113045312 + L1PA3 LINE L1 52 6015 -140 814 317 144 62 chr6 69371359 69372013 -113043229 - HAL1 LINE L1 -1130 1377 645 1498 209 27 0 chr6 69372013 69372305 -113042937 + AluJb SINE Alu 1 300 -12 814 317 144 62 chr6 69372305 69372444 -113042798 - HAL1 LINE L1 -1862 645 519 2384 143 3 11 chr6 69372644 69373022 -113042220 + THE1C LTR MaLR 1 375 0 8241 123 57 26 chr6 69373022 69374341 -113040901 + THE1C-int LTR MaLR 2 1360 -220 341 128 11 106 chr6 69374341 69374435 -113040807 + L1PA15 LINE L1 6079 6163 -2 283 371 84 8 chr6 69376138 69376375 -113038867 - MIR SINE MIR 0 262 8 851 274 39 8 chr6 69376957 69377212 -113038030 - LTR16A LTR ERVL -10 440 178 4921 123 13 26 chr6 69377518 69377884 -113037358 - L1PB1 LINE L1 -4 6147 5778 414 0 0 0 chr6 69377884 69377930 -113037312 + (CA)n Simple_repeat Simple_repeat 2 47 0 4921 123 13 26 chr6 69377930 69378398 -113036844 - L1PB1 LINE L1 -373 5778 5324 3316 222 80 14 chr6 69378389 69380166 -113035076 - L1PBa LINE L1 -4819 2044 6 * 37187 94 8 8 chr6 69380943 69387084 -113028158 - L1PA6 LINE L1 -1 6153 11 32 26 0 0 chr6 69387840 69387879 -113027363 + AT_rich Low_complexity Low_complexity 1 39 0 736 110 0 0 chr6 69388166 69388266 -113026976 - LTR12 LTR ERV1 0 714 615 283 255 31 20 chr6 69388269 69388367 -113026875 - LTR30 LTR ERV1 -80 642 544 1693 91 99 4 chr6 69388367 69388620 -113026622 - LTR12 LTR ERV1 -437 277 1 57513 107 15 12 chr6 69388620 69396937 -113018305 - HERV9 LTR ERV1 0 8399 60 739 121 93 107 chr6 69396925 69397065 -113018177 - LTR12 LTR ERV1 -130 584 300 * 269 229 52 21 chr6 69397065 69397161 -113018081 - LTR30 LTR ERV1 -80 642 544 1559 112 117 4 chr6 69397161 69397410 -113017832 - LTR12 LTR ERV1 -437 277 1 2389 83 3 10 chr6 69397742 69398054 -113017188 + AluY SINE Alu 1 310 -1 1279 160 13 25 chr6 69398264 69398501 -113016741 + MER46A DNA MER2_type 2 235 -1 180 0 0 0 chr6 69398609 69398629 -113016613 + (A)n Simple_repeat Simple_repeat 1 20 0 342 285 85 44 chr6 69398904 69399293 -113015949 + HAL1b LINE L1 55 459 -889 583 271 90 68 chr6 69400013 69400279 -113014963 - L2 LINE L2 -1 3312 3041 607 287 102 45 chr6 69400438 69400926 -113014316 - L1M4 LINE L1 -2960 3186 2671 198 71 0 0 chr6 69401162 69401190 -113014052 + (CA)n Simple_repeat Simple_repeat 1 28 0 507 319 39 20 chr6 69401542 69401796 -113013446 + HAL1b LINE L1 380 638 -710 1711 91 0 0 chr6 69402203 69402435 -113012807 + L1PA11 LINE L1 5943 6174 0 371 324 62 29 chr6 69402437 69402853 -113012389 + L1M4c LINE L1 2274 2701 -3681 428 346 62 15 chr6 69403144 69403485 -113011757 + L1MEc LINE L1 750 1106 -5290 593 236 52 11 chr6 69403739 69403913 -113011329 + L1ME3A LINE L1 5989 6169 -1 320 339 46 0 chr6 69405065 69405195 -113010047 + L1ME3 LINE L1 5440 5575 -595 315 252 52 9 chr6 69405261 69405376 -113009866 + L1ME3 LINE L1 5701 5820 -301 561 280 39 10 chr6 69405655 69405840 -113009402 + MIR SINE MIR 25 216 -46 915 263 70 56 chr6 69406758 69406981 -113008261 - MLT1I LTR MaLR -31 378 147 1652 186 9 40 chr6 69406981 69407303 -113007939 + AluJo SINE Alu 1 312 0 915 263 70 56 chr6 69407303 69407452 -113007790 - MLT1I LTR MaLR -262 147 1 23 68 0 0 chr6 69407576 69407620 -113007622 + AT_rich Low_complexity Low_complexity 1 44 0 540 222 68 105 chr6 69409170 69409275 -113005967 + L1ME3 LINE L1 5848 5955 -207 3487 133 3 92 chr6 69409275 69409843 -113005399 + MER41B LTR ERV1 1 618 -17 2087 103 3 17 chr6 69409843 69410143 -113005099 - AluSc SINE Alu -10 299 4 1978 153 3 10 chr6 69410146 69410460 -113004782 - AluSx SINE Alu 0 312 1 3487 133 3 92 chr6 69410460 69410584 -113004658 + MER41B LTR ERV1 620 635 0 540 222 68 105 chr6 69410584 69410673 -113004569 + L1ME3 LINE L1 5955 6046 -116 13181 152 44 13 chr6 69410673 69413018 -113002224 - Tigger1 DNA MER2_type -1 2417 1 540 222 68 105 chr6 69413018 69413146 -113002096 + L1ME3 LINE L1 6046 6159 -3 2318 21 3 11 chr6 69413150 69413435 -113001807 - L1PA4 LINE L1 0 6155 5873 3210 211 69 7 chr6 69413549 69414394 -113000848 - L1 LINE L1 -2215 3931 3035 13864 172 22 27 chr6 69414399 69414908 -113000334 - L1MA3 LINE L1 -1 7723 7213 1659 191 30 0 chr6 69414908 69415211 -113000031 - AluJb SINE Alu 0 312 1 13864 172 22 27 chr6 69415211 69417253 -112997989 - L1MA3 LINE L1 -511 7213 5196 5318 68 3 0 chr6 69417253 69417947 -112997295 - L1PA8 LINE L1 -13 6159 5464 13864 172 22 27 chr6 69417947 69419572 -112995670 - L1MA3 LINE L1 -2528 5196 3565 317 0 70 0 chr6 69419572 69419615 -112995627 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 834 95 0 0 chr6 69419615 69419720 -112995522 - AluY SINE Alu -193 118 14 15821 169 14 30 chr6 69419725 69422669 -112992573 - L1MA3 LINE L1 -3998 3567 670 2023 108 10 45 chr6 69423199 69423513 -112991729 + AluSq SINE Alu 1 303 -10 562 271 13 20 chr6 69423516 69423667 -112991575 + MIR SINE MIR 26 175 -87 30 45 0 0 chr6 69425971 69426015 -112989227 + AT_rich Low_complexity Low_complexity 1 44 0 443 272 0 0 chr6 69426370 69426473 -112988769 + MER63 DNA MER1_type 682 784 -276 2089 123 0 0 chr6 69426608 69426939 -112988303 + AluSx SINE Alu 1 331 0 401 269 65 0 chr6 69428055 69428163 -112987079 - MER117 DNA MER1_type 0 197 83 23 0 0 0 chr6 69428412 69428435 -112986807 + AT_rich Low_complexity Low_complexity 1 23 0 26 82 0 0 chr6 69428696 69428757 -112986485 + AT_rich Low_complexity Low_complexity 1 61 0 450 264 168 32 chr6 69428958 69429113 -112986129 + MIR3 SINE MIR 32 207 -1 308 336 67 8 chr6 69429741 69429860 -112985382 + MIR SINE MIR 29 154 -108 524 287 56 41 chr6 69430023 69430218 -112985024 + MER63A DNA MER1_type 1 198 -12 22 35 0 0 chr6 69430498 69430527 -112984715 + AT_rich Low_complexity Low_complexity 1 29 0 208 330 9 46 chr6 69430541 69430650 -112984592 + MIR SINE MIR 157 261 -1 2025 117 14 14 chr6 69431036 69431327 -112983915 + AluSx SINE Alu 1 291 -21 551 290 135 5 chr6 69431643 69431836 -112983406 + LTR33 LTR ERVL 79 296 -225 795 287 112 20 chr6 69431846 69432149 -112983093 - LTR33 LTR ERVL -16 505 175 4823 23 0 5 chr6 69432282 69432848 -112982394 + L1PA3 LINE L1 5593 6155 0 22 35 0 0 chr6 69432888 69432917 -112982325 + AT_rich Low_complexity Low_complexity 1 29 0 1909 174 0 0 chr6 69433025 69433324 -112981918 + AluJb SINE Alu 9 307 -5 25 65 0 0 chr6 69433375 69433421 -112981821 + AT_rich Low_complexity Low_complexity 1 46 0 702 293 32 28 chr6 69433629 69433882 -112981360 + MIR SINE MIR 7 260 -2 395 318 46 6 chr6 69433926 69434099 -112981143 + L1 LINE L1 4632 4811 -1335 325 331 97 31 chr6 69435428 69435734 -112979508 + MLT1I LTR MaLR 78 409 0 285 146 0 0 chr6 69435917 69435965 -112979277 + (TA)n Simple_repeat Simple_repeat 1 48 0 438 266 40 104 chr6 69436099 69436197 -112979045 - MLT1J LTR MaLR -46 465 362 1964 138 90 56 chr6 69436197 69436610 -112978632 + MSTA LTR MaLR 2 428 0 438 266 40 104 chr6 69436610 69436733 -112978509 - MLT1J LTR MaLR -149 362 258 204 40 0 0 chr6 69437125 69437150 -112978092 + (CA)n Simple_repeat Simple_repeat 2 26 0 286 269 157 0 chr6 69437884 69437992 -112977250 + MER5A DNA MER1_type 64 188 -1 1456 115 0 0 chr6 69438108 69438325 -112976917 - L1PB1 LINE L1 -2 6149 5933 5698 229 14 4 chr6 69438327 69438880 -112976362 - L1 LINE L1 -2422 3724 3178 186 43 0 0 chr6 69438880 69438903 -112976339 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5698 229 14 4 chr6 69438903 69439862 -112975380 - L1 LINE L1 -2968 3178 2197 * 8540 115 61 1 chr6 69439856 69441625 -112973617 - L1PBa LINE L1 -3995 2868 845 26 0 0 0 chr6 69441868 69441894 -112973348 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 69442409 69442430 -112972812 + AT_rich Low_complexity Low_complexity 1 21 0 1414 227 30 42 chr6 69442435 69442836 -112972406 - MLT1C LTR MaLR 0 467 72 295 21 12 0 chr6 69442839 69442880 -112972362 - MLT2A2 LTR ERVL -4 449 416 314 225 56 22 chr6 69442923 69443012 -112972230 + L1MC4 LINE L1 6612 6703 -1339 2779 88 2 10 chr6 69443017 69443417 -112971825 - MLT2A1 LTR ERVL -47 397 1 40891 81 12 3 chr6 69443417 69449019 -112966223 - HERVL-A1-A1 LTR ERVL 0 5654 1 2890 92 6 79 chr6 69449019 69449498 -112965744 - MLT2A1 LTR ERVL 0 444 1 391 208 0 0 chr6 69449498 69449575 -112965667 - MLT1C LTR MaLR -390 77 1 215 246 42 66 chr6 69449691 69449833 -112965409 + MIR3 SINE MIR 33 172 -36 15839 188 42 46 chr6 69449972 69452497 -112962745 + L1MA2 LINE L1 17 2512 -5053 2301 106 26 0 chr6 69452497 69452800 -112962442 + AluY SINE Alu 1 311 0 15839 188 42 46 chr6 69452800 69455280 -112959962 + L1MA2 LINE L1 2512 5000 -2565 1900 164 32 27 chr6 69455280 69455653 -112959589 + THE1C LTR MaLR 1 375 0 8064 132 78 40 chr6 69455653 69457169 -112958073 + THE1C-int LTR MaLR 1 1574 -6 2070 144 19 27 chr6 69457174 69457550 -112957692 + THE1C LTR MaLR 1 373 -2 5173 139 56 14 chr6 69457551 69459164 -112956078 + L1MA2 LINE L1 5988 7671 -52 1943 145 24 0 chr6 69459238 69459535 -112955707 + AluJb SINE Alu 1 304 -8 1192 274 0 10 chr6 69459721 69460013 -112955229 + AluJo SINE Alu 13 301 -11 221 208 19 0 chr6 69461488 69461541 -112953701 + (TA)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr6 69463146 69463168 -112952074 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr6 69463415 69463453 -112951789 + AT_rich Low_complexity Low_complexity 1 38 0 183 313 0 60 chr6 69463458 69463525 -112951717 - L2 LINE L2 0 3272 3210 2223 122 3 0 chr6 69463781 69464105 -112951137 - AluSp SINE Alu 0 325 1 225 253 84 42 chr6 69464363 69464458 -112950784 + L2 LINE L2 3168 3266 -6 345 272 0 125 chr6 69464472 69464608 -112950634 + L2 LINE L2 3191 3309 -4 2241 122 0 0 chr6 69464888 69465192 -112950050 + AluSx SINE Alu 2 305 -7 1292 201 50 21 chr6 69465194 69465533 -112949709 + MER65C LTR ERV1 1 349 -112 363 233 74 108 chr6 69465678 69466030 -112949212 - MLT2C1 LTR ERVL -14 383 44 * 501 165 0 10 chr6 69465942 69466039 -112949203 - MLT1E3 LTR MaLR -473 151 56 399 320 8 8 chr6 69466047 69466175 -112949067 - MLT2F LTR ERVL -517 146 19 1066 155 5 0 chr6 69466192 69466385 -112948857 + L1PBa LINE L1 1 194 -6669 237 226 0 0 chr6 69466385 69466438 -112948804 + L1PBa LINE L1 995 1047 -5816 6793 118 31 8 chr6 69466439 69467677 -112947565 + L1PBa LINE L1 1092 2505 -4358 1527 130 0 13 chr6 69467743 69467974 -112947268 + AluSq SINE Alu 74 301 -12 1230 114 0 0 chr6 69467974 69468158 -112947084 + L1PB1 LINE L1 5964 6147 -4 23 33 0 0 chr6 69468165 69468195 -112947047 + AT_rich Low_complexity Low_complexity 1 30 0 243 374 65 0 chr6 69468264 69468371 -112946871 - L2 LINE L2 -56 3216 3103 22 35 0 0 chr6 69468424 69468453 -112946789 + AT_rich Low_complexity Low_complexity 1 29 0 1823 141 27 51 chr6 69468569 69468939 -112946303 + THE1C LTR MaLR 15 375 0 208 390 16 0 chr6 69469029 69469152 -112946090 - MIR3 SINE MIR -6 202 78 40 73 0 0 chr6 69469485 69469567 -112945675 + AT_rich Low_complexity Low_complexity 1 82 0 335 156 50 44 chr6 69470158 69470318 -112944924 + (TA)n Simple_repeat Simple_repeat 1 161 0 2192 109 0 3 chr6 69470387 69470681 -112944561 - AluSx SINE Alu -19 293 1 835 305 33 44 chr6 69471242 69471755 -112943487 + MLT1H LTR MaLR 1 549 0 6021 75 8 281 chr6 69474009 69475947 -112939295 + SVA Other Other 13 1433 0 749 233 179 54 chr6 69476197 69476622 -112938620 - MLT1D LTR MaLR -27 478 1 2190 127 0 0 chr6 69476762 69477070 -112938172 - AluY SINE Alu -3 308 1 34706 98 8 7 chr6 69477666 69483826 -112931416 + L1PA6 LINE L1 11 6178 0 331 248 21 71 chr6 69484849 69484990 -112930252 + L1ME3A LINE L1 5106 5239 -907 395 70 18 0 chr6 69485026 69485083 -112930159 + MADE1 DNA Mariner 1 58 -22 480 300 103 16 chr6 69485097 69485581 -112929661 + L1ME3A LINE L1 5416 5941 -229 438 319 119 44 chr6 69485983 69486394 -112928848 + L2 LINE L2 2088 2529 -785 261 0 0 0 chr6 69486485 69486514 -112928728 + (TG)n Simple_repeat Simple_repeat 2 30 0 189 195 0 0 chr6 69486514 69486555 -112928687 + (TA)n Simple_repeat Simple_repeat 1 41 0 180 329 139 0 chr6 69486808 69486887 -112928355 + L2 LINE L2 2923 3012 -260 234 328 85 22 chr6 69487556 69487602 -112927640 + MIR SINE MIR 16 58 -150 3041 123 25 8 chr6 69487602 69488090 -112927152 - L1PA16 LINE L1 -2 6164 5669 234 328 85 22 chr6 69488090 69488183 -112927059 + MIR SINE MIR 58 152 -56 2367 193 39 60 chr6 69488305 69488524 -112926718 - MER68 LTR ERV1 0 562 340 1720 153 17 36 chr6 69488524 69488825 -112926417 - AluSx SINE Alu -17 295 1 2367 193 39 60 chr6 69488825 69489175 -112926067 - MER68 LTR ERV1 -222 340 5 451 303 0 15 chr6 69489277 69489409 -112925833 + MIR SINE MIR 108 237 -25 382 273 8 8 chr6 69489475 69489603 -112925639 + L1M4 LINE L1 3694 3821 -2325 391 263 151 50 chr6 69489635 69490072 -112925170 + L1M4 LINE L1 3897 4377 -1769 249 294 128 25 chr6 69490219 69490454 -112924788 + L1M4 LINE L1 4586 4844 -1302 1510 170 22 29 chr6 69490886 69491163 -112924079 + AluJo SINE Alu 11 285 -27 209 125 0 42 chr6 69491163 69491211 -112924031 + (GGGGA)n Simple_repeat Simple_repeat 3 48 0 224 57 0 29 chr6 69491225 69491260 -112923982 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1394 212 0 0 chr6 69491260 69491534 -112923708 - L1 LINE L1 -1241 4905 4632 327 89 0 0 chr6 69491536 69491581 -112923661 - MADE1 DNA Mariner -35 45 1 2075 119 33 0 chr6 69492975 69493277 -112921965 - AluSq SINE Alu -1 312 1 21 36 0 0 chr6 69493321 69493349 -112921893 + AT_rich Low_complexity Low_complexity 1 28 0 210 222 0 0 chr6 69493458 69493512 -112921730 + GA-rich Low_complexity Low_complexity 5 58 0 21 36 0 0 chr6 69493780 69493808 -112921434 + AT_rich Low_complexity Low_complexity 1 28 0 239 0 32 0 chr6 69494932 69494963 -112920279 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 581 252 59 0 chr6 69494963 69495098 -112920144 - AluSg/x SINE Alu -33 277 135 2643 104 8 11 chr6 69496916 69497292 -112917950 + THE1C LTR MaLR 1 375 0 1536 210 28 19 chr6 69498037 69498399 -112916843 + MLT1A1 LTR MaLR 1 365 0 531 309 75 28 chr6 69498674 69498994 -112916248 + LTR16C LTR ERVL 156 490 -1 193 211 113 14 chr6 69499174 69499245 -112915997 + MIR3 SINE MIR 101 178 -30 29 47 0 0 chr6 69499908 69499951 -112915291 + AT_rich Low_complexity Low_complexity 1 43 0 1529 218 10 51 chr6 69500317 69500707 -112914535 - MLT1A2 LTR MaLR 0 374 1 3391 242 106 55 chr6 69500713 69502010 -112913232 - MLT1A2-int LTR MaLR -7 1364 2 1197 237 89 80 chr6 69502011 69502183 -112913059 - MLT2B1 LTR ERVL 0 520 351 1436 111 0 9 chr6 69502183 69502409 -112912833 + L1MA2 LINE L1 6079 6302 -2 1197 237 89 80 chr6 69502409 69502750 -112912492 - MLT2B1 LTR ERVL -169 351 2 2220 122 0 3 chr6 69504433 69504744 -112910498 - AluSq SINE Alu -3 310 1 7098 184 13 6 chr6 69504747 69506519 -112908723 - L1P5 LINE L1 -545 5606 3818 1825 160 3 3 chr6 69506693 69506980 -112908262 - AluSx SINE Alu -14 298 12 1990 150 16 0 chr6 69507088 69507395 -112907847 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 69508449 69508471 -112906771 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 69508690 69508711 -112906531 + AT_rich Low_complexity Low_complexity 1 21 0 272 224 30 15 chr6 69510403 69510470 -112904772 + MIR3 SINE MIR 102 169 -39 380 262 65 19 chr6 69511113 69511220 -112904022 + MIR SINE MIR 12 123 -139 291 184 0 0 chr6 69511225 69511274 -112903968 + MER45 DNA AcHobo 1533 1581 0 24 0 0 0 chr6 69512838 69512862 -112902380 + AT_rich Low_complexity Low_complexity 1 24 0 2237 93 0 17 chr6 69512954 69513255 -112901987 + AluY SINE Alu 1 296 -15 270 188 0 0 chr6 69513320 69513368 -112901874 - MIR SINE MIR -31 231 184 1180 306 43 12 chr6 69513489 69513904 -112901338 + L2 LINE L2 2010 2437 -877 2013 149 76 15 chr6 69513904 69514247 -112900995 - THE1B LTR MaLR 0 364 1 11290 102 4 2 chr6 69514247 69515794 -112899448 - THE1B-int LTR MaLR 0 1580 31 532 287 40 20 chr6 69515844 69515910 -112899332 - THE1B LTR MaLR -1 374 311 189 0 0 0 chr6 69515910 69515931 -112899311 + (A)n Simple_repeat Simple_repeat 1 21 0 532 287 40 20 chr6 69515931 69516119 -112899123 - THE1B LTR MaLR -64 311 115 426 296 38 69 chr6 69516224 69516515 -112898727 + MLT1H LTR MaLR 268 549 0 256 308 54 31 chr6 69516516 69516646 -112898596 - MLT1L LTR MaLR -361 254 122 6087 74 8 282 chr6 69518769 69520661 -112894581 + SVA Other Other 13 1386 0 883 233 179 54 chr6 69520958 69521383 -112893859 - MLT1D LTR MaLR -27 478 1 2168 119 0 0 chr6 69521536 69521831 -112893411 - AluY SINE Alu -16 295 1 12759 142 19 19 chr6 69522418 69524583 -112890659 + L1P LINE L1 2 2164 -3982 10201 105 66 0 chr6 69524587 69526069 -112889173 + THE1A-int LTR MaLR 1 1580 0 2545 107 3 0 chr6 69526069 69526423 -112888819 + THE1A LTR MaLR 1 355 0 3313 148 4 30 chr6 69529224 69529786 -112885456 + MER44D DNA MER2_type 1 602 -3 23 78 0 0 chr6 69530762 69530813 -112884429 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr6 69531084 69531106 -112884136 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr6 69531516 69531543 -112883699 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 203 53 53 26 chr6 69531583 69531621 -112883621 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3175 133 4 4 chr6 69531630 69532127 -112883115 + LOR1a LTR ERV1 1 497 0 2312 109 3 0 chr6 69532466 69532778 -112882464 - AluSp SINE Alu 0 313 1 239 362 86 29 chr6 69532780 69532990 -112882252 + MLT1J LTR MaLR 41 262 -249 26 50 0 0 chr6 69533182 69533222 -112882020 + AT_rich Low_complexity Low_complexity 1 40 0 1493 162 58 52 chr6 69533278 69533798 -112881444 + LTR4 LTR ERV1 27 596 0 26 0 0 0 chr6 69534387 69534413 -112880829 + AT_rich Low_complexity Low_complexity 1 26 0 511 282 50 84 chr6 69534806 69535185 -112880057 - L1MC4a LINE L1 -1882 5926 5561 26 0 0 0 chr6 69535569 69535595 -112879647 + AT_rich Low_complexity Low_complexity 1 26 0 993 168 45 59 chr6 69535767 69535987 -112879255 - MLT1A1 LTR MaLR 0 365 149 360 0 0 0 chr6 69535987 69536027 -112879215 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1385 203 29 32 chr6 69536027 69536308 -112878934 - AluJo SINE Alu -32 280 1 733 181 12 38 chr6 69536309 69536469 -112878773 - MLT1A1 LTR MaLR -209 156 1 1678 148 70 7 chr6 69538674 69538958 -112876284 - AluSx SINE Alu -10 302 1 532 272 89 30 chr6 69540337 69540539 -112874703 - MIR SINE MIR -5 257 44 331 257 103 15 chr6 69541043 69541179 -112874063 + MIR SINE MIR 112 259 -3 23 0 0 0 chr6 69541562 69541585 -112873657 + AT_rich Low_complexity Low_complexity 1 23 0 273 253 12 24 chr6 69541596 69541679 -112873563 + MIR SINE MIR 33 114 -148 395 158 150 0 chr6 69542485 69542605 -112872637 + LTR37A LTR ERV1 286 423 -3 202 393 44 22 chr6 69542959 69543094 -112872148 - L2 LINE L2 -194 3078 2941 351 0 0 0 chr6 69543786 69543825 -112871417 + (TG)n Simple_repeat Simple_repeat 2 40 0 1289 55 0 0 chr6 69544468 69544631 -112870611 - L1PA4 LINE L1 -3 6152 5990 582 238 134 64 chr6 69545163 69545567 -112869675 + L1MC4a LINE L1 5843 6274 -1534 600 263 80 64 chr6 69545610 69545937 -112869305 + L1MC4 LINE L1 7256 7587 -455 1682 95 0 0 chr6 69546227 69546438 -112868804 - AluSc SINE Alu -26 283 73 446 191 44 73 chr6 69546517 69547529 -112867713 - SVA Other Other -798 588 457 * 572 88 12 0 chr6 69547522 69547602 -112867640 - AluSc SINE Alu -225 84 4 210 297 14 0 chr6 69549490 69549564 -112865678 - MIR SINE MIR -167 95 21 324 256 0 11 chr6 69550161 69550251 -112864991 - L1M1 LINE L1 -3947 3618 3530 22801 86 7 6 chr6 69550283 69554546 -112860696 - L1PA7 LINE L1 -1 6153 1891 682 273 33 7 chr6 69554555 69554855 -112860387 + L1MC4 LINE L1 7611 7918 -124 835 335 51 25 chr6 69554890 69555059 -112860183 + HERVL LTR ERVL 4136 4299 -1355 1805 176 45 114 chr6 69555059 69555611 -112859631 - MER67D LTR ERV1 0 514 1 835 335 51 25 chr6 69555611 69555952 -112859290 + HERVL LTR ERVL 4299 4659 -995 1424 196 136 14 chr6 69556192 69556545 -112858697 - MSTD LTR MaLR 0 396 1 383 379 43 13 chr6 69557332 69557564 -112857678 + LTR16C LTR ERVL 162 400 -91 347 324 28 34 chr6 69557650 69557829 -112857413 + MIR SINE MIR 85 262 0 186 294 114 69 chr6 69558097 69558342 -112856900 - L2 LINE L2 -1704 1610 1355 25 0 0 0 chr6 69559018 69559043 -112856199 + AT_rich Low_complexity Low_complexity 1 25 0 3339 260 50 45 chr6 69559181 69560599 -112854643 + L1MEc LINE L1 36 1465 -4931 2318 103 0 0 chr6 69560599 69560900 -112854342 + AluSg SINE Alu 1 301 -9 3339 260 50 45 chr6 69560900 69561130 -112854112 + L1MEc LINE L1 1465 1692 -4704 609 253 29 0 chr6 69561130 69561304 -112853938 + L1M4 LINE L1 4712 4890 -1256 219 414 11 0 chr6 69562084 69562171 -112853071 - L2 LINE L2 -2889 425 338 269 120 0 0 chr6 69562561 69562611 -112852631 - AluSc SINE Alu -3 296 247 423 160 64 0 chr6 69563091 69563185 -112852057 + MER53 DNA DNA 1 100 -89 1671 181 3 26 chr6 69563316 69563626 -112851616 + AluJb SINE Alu 1 303 -9 423 269 156 30 chr6 69563961 69564183 -112851059 - MIR SINE MIR -2 260 19 1926 88 26 7 chr6 69564435 69564708 -112850534 - L1PA10 LINE L1 -4 6164 5887 183 156 0 0 chr6 69565279 69565311 -112849931 + (CATATA)n Simple_repeat Simple_repeat 1 32 0 1393 67 11 0 chr6 69565592 69565771 -112849471 + AluY SINE Alu 1 181 -130 896 91 8 0 chr6 69565872 69566004 -112849238 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 2230 74 0 13 chr6 69567451 69567749 -112847493 + AluY SINE Alu 1 294 -17 2406 68 3 6 chr6 69568115 69568426 -112846816 + AluY SINE Alu 1 310 -1 355 143 91 0 chr6 69568612 69568689 -112846553 - MLT1D LTR MaLR -2 503 420 1700 121 76 9 chr6 69568790 69569105 -112846137 - MER50 LTR ERV1 -391 343 8 2379 66 3 3 chr6 69570300 69570601 -112844641 + AluY SINE Alu 1 301 -10 216 0 0 0 chr6 69570679 69570703 -112844539 + (CA)n Simple_repeat Simple_repeat 1 24 0 202 341 71 24 chr6 69570786 69570871 -112844371 + MIR SINE MIR 59 147 -61 408 143 0 0 chr6 69571167 69571230 -112844012 + AluSc SINE Alu 230 292 -17 2283 125 0 3 chr6 69571284 69571596 -112843646 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr6 69573617 69573642 -112841600 + AT_rich Low_complexity Low_complexity 1 25 0 510 268 40 71 chr6 69573642 69573840 -112841402 - MIR SINE MIR -19 243 52 298 250 15 29 chr6 69573845 69573913 -112841329 - MIR SINE MIR -165 97 31 252 0 0 0 chr6 69574061 69574089 -112841153 + (TG)n Simple_repeat Simple_repeat 1 28 0 325 220 340 7 chr6 69574800 69574941 -112840301 - MER5A DNA MER1_type 0 189 2 1345 266 74 5 chr6 69575767 69576199 -112839043 + LTR40b LTR ERVL 1 462 0 1631 194 86 19 chr6 69576310 69576681 -112838561 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr6 69576800 69576821 -112838421 + AT_rich Low_complexity Low_complexity 1 21 0 187 140 40 0 chr6 69577054 69577104 -112838138 + (TA)n Simple_repeat Simple_repeat 2 53 0 2264 93 0 3 chr6 69578424 69578736 -112836506 - AluY SINE Alu 0 311 1 228 198 8 41 chr6 69578993 69579114 -112836128 + (TA)n Simple_repeat Simple_repeat 2 118 0 247 229 60 0 chr6 69579129 69579212 -112836030 + MER20B DNA MER1_type 686 773 -10 1485 255 30 39 chr6 69579843 69580403 -112834839 - L1ME1 LINE L1 -12 6154 5600 851 179 17 28 chr6 69580641 69580820 -112834422 - MLT1D LTR MaLR -328 177 1 690 282 108 59 chr6 69581934 69582376 -112832866 + L2 LINE L2 2701 3175 -138 252 86 0 0 chr6 69582376 69582411 -112832831 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 690 282 108 59 chr6 69582411 69582558 -112832684 + L2 LINE L2 3175 3313 0 338 385 14 0 chr6 69582585 69582728 -112832514 - MIR SINE MIR -69 193 49 21 36 0 0 chr6 69582767 69582795 -112832447 + AT_rich Low_complexity Low_complexity 1 28 0 1666 88 5 0 chr6 69582971 69583188 -112832054 - AluSp SINE Alu -13 300 83 288 0 0 0 chr6 69583904 69583936 -112831306 + (CA)n Simple_repeat Simple_repeat 2 33 0 2255 167 21 35 chr6 69584893 69584932 -112830310 - MSTB LTR MaLR 0 426 388 1672 93 0 0 chr6 69584932 69585148 -112830094 + AluSg/x SINE Alu 89 304 -8 2255 167 21 35 chr6 69585148 69585540 -112829702 - MSTB LTR MaLR -38 388 1 2292 89 0 3 chr6 69585858 69586197 -112829045 - AluSp SINE Alu 0 338 1 799 164 124 144 chr6 69586358 69586706 -112828536 + MER7A DNA MER2_type 1 339 -7 211 213 21 0 chr6 69586722 69586769 -112828473 + CT-rich Low_complexity Low_complexity 2 49 0 181 167 37 0 chr6 69587376 69587430 -112827812 + (TA)n Simple_repeat Simple_repeat 2 57 0 23 54 0 0 chr6 69588899 69588936 -112826306 + AT_rich Low_complexity Low_complexity 1 37 0 211 276 35 17 chr6 69589521 69589579 -112825663 + MIR3 SINE MIR 10 68 -140 266 356 41 7 chr6 69589591 69589737 -112825505 + MIR SINE MIR 106 256 -6 352 239 22 11 chr6 69589887 69589979 -112825263 - LTR67 LTR ERVL -39 518 426 4532 103 99 100 chr6 69590165 69591687 -112823555 - pTR5 LTR ERV1 0 2438 66 288 325 8 16 chr6 69591688 69591814 -112823428 - LTR67 LTR ERVL -423 134 10 186 118 0 0 chr6 69591828 69591862 -112823380 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 228 306 24 12 chr6 69592882 69592967 -112822275 + L2 LINE L2 3184 3269 -3 206 81 27 0 chr6 69593659 69593696 -112821546 + (CA)n Simple_repeat Simple_repeat 1 38 0 401 188 12 0 chr6 69593720 69593805 -112821437 - MLT1J LTR MaLR -25 486 401 1965 134 37 7 chr6 69593995 69594294 -112820948 + AluSx SINE Alu 5 312 0 304 327 54 18 chr6 69594310 69594478 -112820764 - MLT1J LTR MaLR -316 195 22 1743 148 0 11 chr6 69594636 69594914 -112820328 - AluJo SINE Alu -9 303 29 299 44 22 0 chr6 69597495 69597540 -112817702 + (TA)n Simple_repeat Simple_repeat 2 47 0 569 254 45 23 chr6 69598112 69598289 -112816953 + MIR3 SINE MIR 25 205 -3 181 301 36 48 chr6 69598296 69598379 -112816863 - L2 LINE L2 -18 3254 3173 223 244 0 0 chr6 69598523 69598564 -112816678 + polypyrimidine Low_complexity Low_complexity 1 41 0 672 208 14 7 chr6 69598564 69598708 -112816534 - MLT1A1 LTR MaLR -49 316 172 180 379 32 16 chr6 69599184 69599308 -112815934 - L3b LINE CR1 -237 1346 1221 2447 76 3 0 chr6 69599887 69600191 -112815051 - AluSq SINE Alu -8 305 1 724 305 34 4 chr6 69602161 69602423 -112812819 + LTR33 LTR ERVL 2 271 -250 949 112 0 8 chr6 69602445 69602579 -112812663 - AluSq/x SINE Alu -179 133 1 2299 110 0 3 chr6 69602592 69602900 -112812342 - AluSx SINE Alu -5 307 1 614 248 84 23 chr6 69602900 69603114 -112812128 + LTR33 LTR ERVL 255 481 -40 830 264 35 0 chr6 69603570 69603771 -112811471 + MIR SINE MIR 18 225 -37 2363 91 0 3 chr6 69604339 69604648 -112810594 - AluY SINE Alu -3 308 1 1879 120 3 34 chr6 69604831 69605229 -112810013 - AluSx SINE Alu 0 389 1 575 340 15 5 chr6 69605340 69605540 -112809702 - MIR SINE MIR -48 214 13 473 284 0 85 chr6 69605749 69605950 -112809292 + MIR SINE MIR 29 212 -50 1931 171 3 0 chr6 69606328 69606621 -112808621 + AluSx SINE Alu 1 294 -18 621 277 148 28 chr6 69606630 69606955 -112808287 - LTR33 LTR ERVL -58 463 100 526 316 62 36 chr6 69606957 69607264 -112807978 + MLT1L LTR MaLR 205 519 -96 2058 107 20 20 chr6 69607264 69607564 -112807678 - AluSx SINE Alu -12 300 1 1187 228 4 8 chr6 69607621 69607871 -112807371 - MER76 LTR ERV -439 249 1 1090 173 30 0 chr6 69607886 69608088 -112807154 + L1MDa LINE L1 41 248 -6292 * 2017 209 55 64 chr6 69608080 69608589 -112806653 - L1MDa LINE L1 -5923 617 114 2442 73 0 3 chr6 69608589 69608891 -112806351 - AluSc SINE Alu -8 301 1 2017 209 55 64 chr6 69608891 69609004 -112806238 - L1MDa LINE L1 -6426 114 1 850 236 111 1 chr6 69609567 69609905 -112805337 - LTR50 LTR ERVL -1 794 344 462 227 221 0 chr6 69609983 69610137 -112805105 - LTR50 LTR ERVL -573 222 35 225 0 0 0 chr6 69610212 69610237 -112805005 + (TG)n Simple_repeat Simple_repeat 2 26 0 2190 109 36 0 chr6 69610302 69610604 -112804638 + AluSq SINE Alu 1 313 0 362 123 0 31 chr6 69611471 69611536 -112803706 + THE1C LTR MaLR 1 63 -312 815 225 79 29 chr6 69611729 69611969 -112803273 + MER34C LTR ERV1 162 413 -172 382 215 13 28 chr6 69611977 69612117 -112803125 + LTR23-int LTR ERV1 1096 1190 -3681 334 211 20 99 chr6 69612238 69612390 -112802852 + LTR57-int LTR ERVL 1023 1162 -4181 * 652 147 23 0 chr6 69612315 69612444 -112802798 + LTR23-int LTR ERV1 3141 3272 -3059 441 184 0 0 chr6 69612496 69612572 -112802670 + LTR23-int LTR ERV1 3264 3339 -2992 488 192 0 0 chr6 69612635 69612734 -112802508 + LTR23-int LTR ERV1 3355 3453 -2878 1747 194 7 0 chr6 69612886 69613190 -112802052 + AluJb SINE Alu 6 311 -1 591 222 32 5 chr6 69613278 69613494 -112801748 + LTR23-int LTR ERV1 1911 2132 -2991 1680 160 47 7 chr6 69613505 69613805 -112801437 + AluSx SINE Alu 1 312 0 320 321 54 18 chr6 69613820 69613988 -112801254 - MLT1J LTR MaLR -316 195 22 1727 152 0 7 chr6 69614146 69614423 -112800819 - AluJo SINE Alu -9 303 29 332 22 22 0 chr6 69617004 69617049 -112798193 + (TA)n Simple_repeat Simple_repeat 2 47 0 553 238 33 40 chr6 69618238 69618389 -112796853 + MIR SINE MIR 58 207 -55 2457 143 10 3 chr6 69618725 69619110 -112796132 - MLT1B LTR MaLR -2 388 1 1853 129 3 37 chr6 69619276 69619571 -112795671 + AluSx SINE Alu 2 286 -26 592 182 126 57 chr6 69619585 69619744 -112795498 + AluJb SINE Alu 124 293 -19 1355 177 56 53 chr6 69619877 69620216 -112795026 + MER2 DNA MER2_type 1 340 -4 2180 137 0 6 chr6 69620318 69620631 -112794611 - AluSx SINE Alu -1 311 1 1174 165 77 18 chr6 69620631 69620740 -112794502 - L1MDa LINE L1 -3642 2898 2797 1180 207 74 21 chr6 69620740 69621025 -112794217 - AluJb SINE Alu 0 302 3 1531 212 11 0 chr6 69621035 69621318 -112793924 - AluJb SINE Alu -23 289 4 1174 165 77 18 chr6 69621318 69621665 -112793577 - L1MDa LINE L1 -3751 2789 2386 315 217 75 0 chr6 69621693 69621799 -112793443 - L1MDa LINE L1 -4133 2407 2294 543 205 19 51 chr6 69621836 69621992 -112793250 - L1MC1 LINE L1 0 6333 6183 2047 133 3 13 chr6 69622021 69622323 -112792919 + AluSx SINE Alu 1 299 -13 244 292 0 0 chr6 69623340 69623412 -112791830 + HsTC2 DNA Tc2 1660 1731 -167 849 232 134 13 chr6 69623418 69623642 -112791600 - MER45C DNA AcHobo 0 953 703 698 240 62 61 chr6 69623623 69623962 -112791280 - MER45C DNA AcHobo -541 412 20 * 2350 95 0 0 chr6 69624350 69624645 -112790597 - AluSc SINE Alu -14 295 1 2111 135 0 10 chr6 69624657 69624953 -112790289 - AluSx SINE Alu -19 293 1 244 189 0 0 chr6 69624953 69625006 -112790236 - L1MDa LINE L1 -5210 1332 1280 1031 190 92 39 chr6 69625015 69625352 -112789890 - L1MDa LINE L1 -5112 1428 1074 2235 113 0 0 chr6 69625695 69625987 -112789255 - AluSq SINE Alu -21 292 1 1532 176 0 34 chr6 69626732 69626999 -112788243 + AluJo SINE Alu 39 296 -16 2121 143 0 0 chr6 69627003 69627311 -112787931 + AluSx SINE Alu 1 308 -4 562 180 19 122 chr6 69627315 69627626 -112787616 + LTR49-int LTR ERV1 3569 3847 -2484 501 339 45 52 chr6 69627782 69628186 -112787056 + L2 LINE L2 1763 2163 -1151 1970 128 36 0 chr6 69628243 69628549 -112786693 - AluSx SINE Alu 0 316 1 228 208 42 42 chr6 69630146 69630218 -112785024 + LTR16A1 LTR ERVL 386 457 0 650 198 25 0 chr6 69630534 69630655 -112784587 - FLAM_C SINE Alu -19 124 1 6243 32 4 1 chr6 69630892 69631677 -112783565 - L1PA3 LINE L1 -44 6111 5325 * 7922 30 3 0 chr6 69631675 69632692 -112782550 + L1P LINE L1 2095 3114 -3032 440 240 26 64 chr6 69632795 69633028 -112782214 + HAL1 LINE L1 1928 2151 -356 372 325 0 0 chr6 69633491 69633617 -112781625 - MLT1J LTR MaLR 0 511 386 2152 203 77 16 chr6 69634256 69635072 -112780170 + Charlie1 DNA MER1_type 1864 2757 -4 372 305 92 35 chr6 69636555 69636696 -112778546 - MIR3 SINE MIR -23 185 37 211 269 60 0 chr6 69636719 69636786 -112778456 + MIR SINE MIR 186 256 -6 373 275 256 19 chr6 69636809 69637016 -112778226 + MIR SINE MIR 2 257 -5 1546 152 30 71 chr6 69637502 69637798 -112777444 + AluSx SINE Alu 1 284 -28 308 263 74 0 chr6 69637924 69638019 -112777223 + L1ME4a LINE L1 6017 6118 -3 1885 116 7 51 chr6 69638024 69638363 -112776879 + AluSg SINE Alu 1 326 0 228 245 117 92 chr6 69638370 69638566 -112776676 - L2 LINE L2 0 3313 3113 1963 181 16 8 chr6 69638683 69639070 -112776172 - MLT1B LTR MaLR 0 390 1 298 369 82 5 chr6 69639075 69639270 -112775972 + L2 LINE L2 3104 3313 0 22 35 0 0 chr6 69639699 69639728 -112775514 + AT_rich Low_complexity Low_complexity 1 29 0 536 291 29 0 chr6 69640532 69640707 -112774535 + Charlie8 DNA MER1_type 37 216 -2201 571 207 7 44 chr6 69640745 69640880 -112774362 - MER58B DNA MER1_type -2 339 210 1483 177 68 51 chr6 69641143 69641854 -112773388 - LTR1B LTR ERV1 0 785 1 2095 224 80 18 chr6 69641854 69642407 -112772835 + MLT1E2 LTR MaLR 5 591 -35 1803 220 118 24 chr6 69642460 69642970 -112772272 + MER77 LTR ERV1 41 598 -7 1550 175 34 0 chr6 69643118 69643386 -112771856 - AluJo SINE Alu -35 277 1 219 341 23 0 chr6 69643487 69643575 -112771667 - MIR3 SINE MIR 0 208 119 472 198 17 157 chr6 69644006 69644094 -112771148 + MER97c DNA MER1_type? 1 55 -1035 2028 123 3 27 chr6 69644094 69644394 -112770848 + AluSx SINE Alu 1 293 -19 472 198 17 157 chr6 69644394 69644477 -112770765 + MER97c DNA MER1_type? 55 148 -942 22 0 0 0 chr6 69646341 69646363 -112768879 + AT_rich Low_complexity Low_complexity 1 22 0 212 54 54 0 chr6 69646523 69646560 -112768682 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 251 200 157 0 chr6 69646839 69646909 -112768333 - MIR SINE MIR -116 146 66 2123 105 0 48 chr6 69647108 69647422 -112767820 + AluSg SINE Alu 1 299 -11 1115 215 159 17 chr6 69647816 69648169 -112767073 + MER57A LTR ERV1 1 403 0 3255 185 38 58 chr6 69648169 69649035 -112766207 + MER57A-int LTR ERV1 1 849 -6688 441 270 7 20 chr6 69649124 69649276 -112765966 + MER57A-int LTR ERV1 841 990 -4133 815 225 79 29 chr6 69649281 69649521 -112765721 + MER34C LTR ERV1 162 413 -172 382 215 13 28 chr6 69649529 69649669 -112765573 + MER57A-int LTR ERV1 1096 1190 -3681 334 211 20 99 chr6 69649790 69649942 -112765300 + LTR57-int LTR ERVL 1023 1162 -4181 * 671 124 8 234 chr6 69649867 69650124 -112765118 + MER57A-int LTR ERV1 3141 3339 -2992 488 192 0 0 chr6 69650187 69650286 -112764956 + MER57A-int LTR ERV1 3355 3453 -2878 1772 191 7 0 chr6 69650438 69650742 -112764500 + AluJb SINE Alu 6 311 -1 582 213 57 39 chr6 69650830 69651057 -112764185 + MER57A-int LTR ERV1 1911 2132 -4199 2082 149 0 0 chr6 69651057 69651365 -112763877 + AluSx SINE Alu 1 308 -4 582 213 57 39 chr6 69651365 69651515 -112763727 + MER57A-int LTR ERV1 2132 3714 -2617 5015 200 56 87 chr6 69651537 69652893 -112762349 + MER57A-int LTR ERV1 2553 3949 -3494 1730 129 0 4 chr6 69652893 69653133 -112762109 + AluSq SINE Alu 1 239 -74 5015 200 56 87 chr6 69653133 69653375 -112761867 + MER57A-int LTR ERV1 3949 5821 -1622 5803 201 29 40 chr6 69653704 69655039 -112760203 + MER57A-int LTR ERV1 5825 7144 -393 690 181 132 85 chr6 69655039 69655358 -112759884 + LTR54 LTR ERV1 1 387 -111 472 194 0 19 chr6 69655359 69655462 -112759780 + MER57A-int LTR ERV1 7437 7537 0 1726 142 114 26 chr6 69655463 69655815 -112759427 + MER57A LTR ERV1 12 394 -9 2004 131 3 23 chr6 69655827 69656133 -112759109 + AluJb SINE Alu 1 300 -12 299 291 193 28 chr6 69656159 69656372 -112758870 - MIR SINE MIR -7 255 8 551 231 8 0 chr6 69656835 69656965 -112758277 - Charlie8 DNA MER1_type -2215 202 72 829 254 40 5 chr6 69657174 69657398 -112757844 - MIR SINE MIR 0 262 31 335 350 105 0 chr6 69658984 69659127 -112756115 + L1ME LINE L1 5586 5743 -378 2343 94 3 0 chr6 69659201 69659499 -112755743 + AluSx SINE Alu 1 299 -13 1169 164 75 0 chr6 69659633 69659901 -112755341 - L1MA8 LINE L1 -3 6288 6001 322 385 39 10 chr6 69659901 69660109 -112755133 + L2 LINE L2 2626 2839 -475 3493 126 19 95 chr6 69660389 69660562 -112754680 - L1MA8 LINE L1 -6 6285 6100 7900 128 22 4 chr6 69660562 69661838 -112753404 - HSMAR2 DNA Mariner -1 1301 3 3493 126 19 95 chr6 69661838 69662409 -112752833 - L1MA8 LINE L1 -191 6100 5598 264 351 249 20 chr6 69662696 69663191 -112752051 - L2 LINE L2 -637 2677 2297 189 0 0 0 chr6 69663191 69663212 -112752030 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 264 351 249 20 chr6 69663212 69663414 -112751828 - L2 LINE L2 -1017 2297 1820 2091 150 0 6 chr6 69663603 69663916 -112751326 + AluSx SINE Alu 1 311 -1 396 88 0 0 chr6 69663916 69663973 -112751269 + (CATA)n Simple_repeat Simple_repeat 3 59 0 1232 221 28 45 chr6 69664160 69664518 -112750724 + MLT1A1 LTR MaLR 14 365 0 389 335 149 24 chr6 69664726 69665108 -112750134 - L2 LINE L2 -1889 1425 996 206 300 29 0 chr6 69665165 69665235 -112750007 + L2 LINE L2 3201 3272 0 357 24 0 0 chr6 69665664 69665706 -112749536 + (TG)n Simple_repeat Simple_repeat 1 42 0 180 97 0 0 chr6 69665721 69665752 -112749490 + (TA)n Simple_repeat Simple_repeat 1 31 0 26 50 0 0 chr6 69666791 69666831 -112748411 + AT_rich Low_complexity Low_complexity 1 40 0 909 202 96 14 chr6 69667257 69667475 -112747767 - MIR SINE MIR -14 248 13 213 317 24 37 chr6 69672029 69672111 -112743131 + L3 LINE CR1 1122 1202 -375 1013 138 58 0 chr6 69673296 69673470 -112741772 - L1PB4 LINE L1 -2 6154 5971 426 39 0 0 chr6 69673602 69673654 -112741588 + (CA)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr6 69673676 69673699 -112741543 + AT_rich Low_complexity Low_complexity 1 23 0 1047 219 16 16 chr6 69673752 69673818 -112741424 - Charlie1b DNA MER1_type -2505 256 191 2251 90 7 3 chr6 69673818 69674119 -112741123 - AluSx SINE Alu -10 302 1 1047 219 16 16 chr6 69674119 69674308 -112740934 - Charlie1b DNA MER1_type -2569 192 1 251 279 87 19 chr6 69674369 69674473 -112740769 + MIR3 SINE MIR 95 205 -3 3257 184 15 34 chr6 69674494 69674873 -112740369 + L1MA4A LINE L1 2667 3052 -3094 2057 141 7 3 chr6 69674873 69675179 -112740063 + AluSc SINE Alu 1 307 -2 3257 184 15 34 chr6 69675179 69675645 -112739597 + L1MA4A LINE L1 3052 3496 -2650 1406 116 49 0 chr6 69675645 69675869 -112739373 - LTR12 LTR ERV1 0 714 480 342 208 30 20 chr6 69675870 69675971 -112739271 - LTR30 LTR ERV1 -80 642 541 6269 121 52 29 chr6 69675972 69677676 -112737566 - pTR5 LTR ERV1 0 8399 504 263 213 0 0 chr6 69677672 69677733 -112737509 - HERV17 LTR ERV1 -835 7564 7504 * 455 180 58 10 chr6 69677734 69677918 -112737324 - HERV17 LTR ERV1 -5900 996 743 34855 90 12 6 chr6 69677919 69683086 -112732156 - HERV17 LTR ERV1 -1935 503 17 297 188 39 30 chr6 69683086 69683188 -112732054 - LTR30 LTR ERV1 -73 721 556 485 102 287 9 chr6 69683188 69683296 -112731946 - pTR5 LTR ERV1 -408 2030 1893 624 234 64 6 chr6 69683296 69683467 -112731775 + L1MA4A LINE L1 3492 3672 -2474 195 42 0 0 chr6 69683467 69683491 -112731751 + (GAAAA)n Simple_repeat Simple_repeat 4 27 0 496 239 6 17 chr6 69683520 69683700 -112731542 + GA-rich Low_complexity Low_complexity 3 180 0 1832 154 65 20 chr6 69683726 69684904 -112730338 + L1MA4A LINE L1 3691 4815 -1488 2077 125 3 23 chr6 69684904 69685209 -112730033 + AluSg SINE Alu 1 299 -11 1832 154 65 20 chr6 69685209 69686439 -112728803 + L1MA4A LINE L1 4815 6302 -1 387 0 0 0 chr6 69686567 69686610 -112728632 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr6 69686610 69686639 -112728603 + AT_rich Low_complexity Low_complexity 1 29 0 1634 131 112 15 chr6 69686680 69686947 -112728295 - AluSx SINE Alu -19 293 1 2359 99 0 3 chr6 69686966 69687270 -112727972 - AluSg SINE Alu -7 303 1 1195 130 5 74 chr6 69687312 69687527 -112727715 + AluSg/x SINE Alu 85 284 -28 189 0 0 0 chr6 69687533 69687554 -112727688 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1801 176 3 7 chr6 69687573 69687869 -112727373 + AluJb SINE Alu 6 300 -12 1942 130 0 0 chr6 69688021 69688290 -112726952 - AluSx SINE Alu -43 269 1 198 0 0 0 chr6 69688341 69688363 -112726879 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 7564 205 64 15 chr6 69688497 69690943 -112724299 - L1 LINE L1 -2689 4519 1298 261 0 0 0 chr6 69690943 69690972 -112724270 + (TG)n Simple_repeat Simple_repeat 2 30 0 7564 205 64 15 chr6 69690972 69691836 -112723406 - L1 LINE L1 -5910 1298 478 374 294 86 58 chr6 69692059 69692385 -112722857 + LTR67 LTR ERVL 197 531 -26 1787 220 100 25 chr6 69693743 69694334 -112720908 + MLT1E2 LTR MaLR 1 626 0 1397 266 86 28 chr6 69694337 69694979 -112720263 + HAL1 LINE L1 1473 2151 -356 724 268 91 93 chr6 69695442 69695949 -112719293 - MLT1J LTR MaLR 0 511 6 318 341 62 17 chr6 69695950 69696129 -112719113 - L1M4 LINE L1 -1225 4921 4735 481 155 0 72 chr6 69696129 69696226 -112719016 + MER21B LTR ERV1 1 90 -773 2480 222 108 14 chr6 69696258 69696880 -112718362 + MER21B LTR ERV1 44 723 -140 473 309 99 10 chr6 69696872 69697073 -112718169 + MER21B LTR ERV1 179 397 -466 * 565 236 114 0 chr6 69697064 69697204 -112718038 - MER21B LTR ERV1 -664 199 44 274 206 151 41 chr6 69697209 69697282 -112717960 + MER21B LTR ERV1 723 803 -60 387 240 147 34 chr6 69697337 69697541 -112717701 - L1M4 LINE L1 -1433 4713 4487 252 59 0 0 chr6 69697651 69697685 -112717557 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1993 104 0 0 chr6 69698315 69698574 -112716668 + AluSx SINE Alu 40 298 -14 776 151 0 43 chr6 69698856 69698995 -112716247 - FLAM_C SINE Alu 0 133 1 1358 223 52 45 chr6 69699457 69699838 -112715404 + MLT1E3 LTR MaLR 3 386 -238 605 268 24 6 chr6 69699845 69700013 -112715229 - MLT1E2 LTR MaLR -47 579 409 265 56 444 0 chr6 69700198 69700252 -112714990 + MADE1 DNA Mariner 3 80 0 2064 133 23 0 chr6 69700674 69700975 -112714267 + AluSx SINE Alu 1 308 -4 1783 201 19 14 chr6 69701073 69701436 -112713806 + MLT1A1 LTR MaLR 1 365 0 309 68 0 0 chr6 69701478 69701522 -112713720 + (TG)n Simple_repeat Simple_repeat 1 44 0 366 91 0 0 chr6 69701522 69701577 -112713665 + (GA)n Simple_repeat Simple_repeat 2 56 0 1821 160 7 4 chr6 69701581 69701862 -112713380 - AluSx SINE Alu -30 282 1 1462 204 12 0 chr6 69702486 69702741 -112712501 + AluJo SINE Alu 1 258 -54 255 61 0 0 chr6 69702741 69702774 -112712468 + (TC)n Simple_repeat Simple_repeat 2 34 0 330 45 0 0 chr6 69702774 69702818 -112712424 + (CA)n Simple_repeat Simple_repeat 1 44 0 195 42 0 0 chr6 69703693 69703717 -112711525 + (A)n Simple_repeat Simple_repeat 1 24 0 5416 159 34 6 chr6 69703717 69705369 -112709873 + L1MA4A LINE L1 4608 6303 0 545 319 81 45 chr6 69705389 69705548 -112709694 - L2 LINE L2 -3 3310 3158 1820 170 41 88 chr6 69705548 69705785 -112709457 - MLT1C LTR MaLR 0 467 263 1808 158 10 10 chr6 69705785 69706083 -112709159 - AluSp SINE Alu -15 298 1 1820 170 41 88 chr6 69706083 69706332 -112708910 - MLT1C LTR MaLR -204 263 4 545 319 81 45 chr6 69706332 69706362 -112708880 - L2 LINE L2 -155 3158 3131 2197 123 0 16 chr6 69706362 69706680 -112708562 + AluSq SINE Alu 1 313 0 545 319 81 45 chr6 69706680 69706821 -112708421 - L2 LINE L2 -182 3131 2967 18454 38 0 0 chr6 69706942 69709954 -112705288 - L1PA4 LINE L1 -3 6152 3136 14131 81 5 1 chr6 69709956 69711908 -112703334 - L1PA4 LINE L1 -4185 1961 2 253 366 30 15 chr6 69712011 69712142 -112703100 - L2 LINE L2 -2 3311 3179 1134 113 56 15 chr6 69712146 69712341 -112702901 - Tigger3b DNA MER2_type -767 464 262 34926 73 50 3 chr6 69712341 69718206 -112697036 + L1PA5 LINE L1 2 6152 -2 200 304 114 0 chr6 69718340 69718419 -112696823 - L3 LINE CR1 -4 1573 1486 785 270 98 84 chr6 69718473 69718951 -112696291 + L2 LINE L2 2829 3313 0 324 288 163 13 chr6 69719557 69719710 -112695532 - MER5B DNA MER1_type -2 176 1 1589 147 77 11 chr6 69719843 69720128 -112695114 + AluSx SINE Alu 1 304 -8 195 129 0 0 chr6 69720128 69720159 -112695083 + (GGAGAA)n Simple_repeat Simple_repeat 1 31 0 698 240 62 61 chr6 69720513 69720852 -112694390 + MER45C DNA AcHobo 20 412 -541 * 849 232 134 13 chr6 69720833 69721057 -112694185 + MER45C DNA AcHobo 703 953 0 244 292 0 0 chr6 69721063 69721135 -112694107 - HsTC2 DNA Tc2 -162 1736 1665 1233 225 128 10 chr6 69722835 69723329 -112691913 - HsTC2 DNA Tc2 -9 1889 1338 2146 165 85 109 chr6 69723337 69723795 -112691447 + L1MC4 LINE L1 7246 7677 -365 1414 126 150 16 chr6 69723795 69724049 -112691193 + AluSx SINE Alu 1 288 -14 2146 165 85 109 chr6 69724049 69724406 -112690836 + L1MC4 LINE L1 7677 8041 -1 436 218 27 18 chr6 69724519 69724629 -112690613 - HsTC2 DNA Tc2 -1775 123 13 512 217 76 8 chr6 69724703 69724892 -112690350 - MLT1D LTR MaLR -3 502 265 30 27 0 0 chr6 69725491 69725528 -112689714 + AT_rich Low_complexity Low_complexity 1 37 0 398 296 173 22 chr6 69725956 69726182 -112689060 - MIR SINE MIR 0 262 3 2446 86 0 3 chr6 69727735 69728048 -112687194 + AluSx SINE Alu 1 312 0 505 89 0 13 chr6 69728053 69728132 -112687110 + Tigger1 DNA MER2_type 631 708 -1710 186 43 0 0 chr6 69728139 69728162 -112687080 + (A)n Simple_repeat Simple_repeat 1 23 0 198 298 114 26 chr6 69728170 69728284 -112686958 - L2 LINE L2 -289 2983 2860 305 251 67 4 chr6 69728342 69728464 -112686778 - MLT1J2 LTR MaLR -173 236 102 2266 137 58 17 chr6 69728568 69728983 -112686259 - MSTB1 LTR MaLR 0 432 1 190 383 21 11 chr6 69728987 69729081 -112686161 - L2 LINE L2 -512 2802 2708 210 361 34 17 chr6 69729736 69729855 -112685387 - MER5A DNA MER1_type 0 189 69 * 299 317 20 10 chr6 69729761 69729862 -112685380 + MER5A DNA MER1_type 39 140 -49 2314 97 3 3 chr6 69729942 69730242 -112685000 - AluSq SINE Alu -13 300 1 2058 148 0 16 chr6 69731019 69731324 -112683918 + AluJb SINE Alu 1 300 -12 228 208 42 42 chr6 69732855 69732927 -112682315 + LTR16A1 LTR ERVL 386 457 0 258 32 0 0 chr6 69733215 69733246 -112681996 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 821 182 0 0 chr6 69733246 69733367 -112681875 - FLAM_C SINE Alu -22 121 1 306 0 0 0 chr6 69733476 69733510 -112681732 + (CA)n Simple_repeat Simple_repeat 2 35 0 301 252 134 47 chr6 69733856 69733983 -112681259 - MIR SINE MIR -70 192 55 805 293 41 79 chr6 69734225 69734508 -112680734 + MLT1L LTR MaLR 5 297 -318 1416 185 32 72 chr6 69734508 69734594 -112680648 + MLT1B LTR MaLR 2 90 -300 432 0 0 0 chr6 69734594 69734642 -112680600 + (TG)n Simple_repeat Simple_repeat 1 48 0 2002 114 14 14 chr6 69734642 69734922 -112680320 - AluSq SINE Alu -33 280 1 1416 185 32 72 chr6 69734922 69735239 -112680003 + MLT1B LTR MaLR 88 390 0 805 293 41 79 chr6 69735239 69735590 -112679652 + MLT1L LTR MaLR 297 615 0 194 62 31 0 chr6 69736494 69736526 -112678716 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2160 132 0 7 chr6 69736921 69737225 -112678017 + AluSx SINE Alu 1 302 -10 1339 180 56 53 chr6 69737336 69737675 -112677567 - MER2 DNA MER2_type -4 340 1 629 174 124 56 chr6 69737809 69737970 -112677272 - AluJb SINE Alu -17 295 124 1853 129 3 37 chr6 69737984 69738279 -112676963 - AluSx SINE Alu -26 286 2 2457 143 10 3 chr6 69738445 69738830 -112676412 + MLT1B LTR MaLR 1 388 -2 538 237 33 46 chr6 69739166 69739318 -112675924 - MIR SINE MIR -55 207 58 2236 114 0 0 chr6 69740223 69740522 -112674720 - AluSx SINE Alu -1 311 13 505 221 78 12 chr6 69740757 69740946 -112674296 - L1MC/D LINE L1 -544 5622 5443 1410 204 10 43 chr6 69741172 69741471 -112673771 + AluJo SINE Alu 2 290 -22 1149 295 23 57 chr6 69741727 69742340 -112672902 - L1MEc LINE L1 -5758 638 47 21 36 0 0 chr6 69743533 69743561 -112671681 + AT_rich Low_complexity Low_complexity 1 28 0 539 40 0 27 chr6 69745165 69745240 -112670002 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1928 188 0 19 chr6 69745260 69745632 -112669610 + MLT1A1 LTR MaLR 1 365 0 634 154 140 21 chr6 69745863 69745978 -112669264 + MER21A LTR ERV1 1 138 -793 207 0 0 0 chr6 69745978 69746001 -112669241 + (TC)n Simple_repeat Simple_repeat 2 24 0 634 154 140 21 chr6 69746001 69746028 -112669214 + MER21A LTR ERV1 138 160 -771 204 40 0 0 chr6 69746028 69746053 -112669189 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 2604 200 37 96 chr6 69746071 69746893 -112668349 + MER21A LTR ERV1 187 912 -19 1499 221 35 30 chr6 69747009 69747462 -112667780 - L1MB7 LINE L1 -1 6183 5735 708 203 95 25 chr6 69747457 69747699 -112667543 - L1M4 LINE L1 -5349 1193 935 * 21 0 0 0 chr6 69747889 69747910 -112667332 + AT_rich Low_complexity Low_complexity 1 21 0 3020 100 33 13 chr6 69748588 69749048 -112666194 - L1PA11 LINE L1 0 6174 5706 251 297 0 0 chr6 69750349 69750413 -112664829 + CT-rich Low_complexity Low_complexity 4 67 0 21 0 0 0 chr6 69750422 69750443 -112664799 + AT_rich Low_complexity Low_complexity 1 21 0 213 367 37 9 chr6 69750950 69751059 -112664183 + L2 LINE L2 2715 2826 -488 198 71 0 0 chr6 69751068 69751096 -112664146 + (CA)n Simple_repeat Simple_repeat 1 28 0 227 316 18 0 chr6 69751203 69751260 -112663982 + L2 LINE L2 3154 3211 -61 24 0 0 0 chr6 69751355 69751379 -112663863 + AT_rich Low_complexity Low_complexity 1 24 0 198 71 0 0 chr6 69751908 69751936 -112663306 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr6 69752311 69752339 -112662903 + AT_rich Low_complexity Low_complexity 1 28 0 2138 98 28 3 chr6 69752345 69752631 -112662611 + AluSq SINE Alu 6 298 -15 307 200 0 0 chr6 69752787 69752847 -112662395 + MER53 DNA DNA 129 188 -1 26 50 0 0 chr6 69753335 69753375 -112661867 + AT_rich Low_complexity Low_complexity 1 40 0 337 257 111 0 chr6 69754111 69754254 -112660988 + MIR SINE MIR 45 201 -61 1697 208 75 10 chr6 69754568 69754967 -112660275 + MSTB LTR MaLR 1 425 -1 373 268 127 21 chr6 69755890 69756032 -112659210 + MIR SINE MIR 29 185 -77 264 388 57 29 chr6 69756581 69756916 -112658326 - L2 LINE L2 -228 3044 2707 29 0 0 0 chr6 69756916 69756945 -112658297 + AT_rich Low_complexity Low_complexity 1 29 0 236 284 12 0 chr6 69757368 69757449 -112657793 + (TA)n Simple_repeat Simple_repeat 2 83 0 218 293 151 9 chr6 69757876 69757982 -112657260 + MIR SINE MIR 128 248 -14 10047 53 6 79 chr6 69758234 69759733 -112655509 + SVA Other Other 2 1393 0 220 278 0 0 chr6 69759982 69760036 -112655206 + (ATATG)n Simple_repeat Simple_repeat 4 57 0 272 389 20 0 chr6 69760297 69760446 -112654796 + MIR SINE MIR 53 204 -58 24 85 0 0 chr6 69764398 69764457 -112650785 + AT_rich Low_complexity Low_complexity 1 59 0 1724 133 85 28 chr6 69764506 69764859 -112650383 - THE1C LTR MaLR 0 375 3 403 211 352 0 chr6 69765344 69765486 -112649756 - MLT1D LTR MaLR 0 505 314 180 0 0 0 chr6 69765598 69765618 -112649624 + (T)n Simple_repeat Simple_repeat 1 20 0 1003 303 151 15 chr6 69767925 69768526 -112646716 + L2 LINE L2 1249 1931 -1383 1797 273 70 29 chr6 69768542 69769494 -112645748 - L1M4 LINE L1 -2863 3283 2293 26 50 0 0 chr6 69769515 69769555 -112645687 + AT_rich Low_complexity Low_complexity 1 40 0 22 80 0 0 chr6 69772264 69772314 -112642928 + AT_rich Low_complexity Low_complexity 1 50 0 3060 314 29 34 chr6 69772764 69774406 -112640836 + L1PBa LINE L1 3 1636 -5227 * 3507 194 15 10 chr6 69774375 69775055 -112640187 + L1PB3 LINE L1 660 1342 -5521 * 12674 208 17 35 chr6 69775044 69777163 -112638079 + L1PB3 LINE L1 2168 4322 -2548 198 71 0 0 chr6 69777163 69777191 -112638051 + (CCA)n Simple_repeat Simple_repeat 1 28 0 12674 208 17 35 chr6 69777191 69779492 -112635750 + L1PB3 LINE L1 4322 6512 -358 369 0 0 0 chr6 69779492 69779533 -112635709 + (CA)n Simple_repeat Simple_repeat 2 42 0 12674 208 17 35 chr6 69779533 69779885 -112635357 + L1PB3 LINE L1 6512 6869 -1 32 0 0 0 chr6 69779920 69779952 -112635290 + AT_rich Low_complexity Low_complexity 1 32 0 887 230 40 52 chr6 69780075 69780327 -112634915 + MLT2B3 LTR ERVL 305 553 -1 233 293 17 0 chr6 69780342 69780400 -112634842 - L2 LINE L2 -4 3309 3251 232 211 35 0 chr6 69780819 69780876 -112634366 + CT-rich Low_complexity Low_complexity 4 62 0 1943 208 40 14 chr6 69780879 69781375 -112633867 - L1MA8 LINE L1 0 6291 5783 1249 308 44 39 chr6 69782056 69782628 -112632614 + L1MA8 LINE L1 466 1040 -6449 2631 269 65 39 chr6 69782714 69783935 -112631307 + L1MA8 LINE L1 1926 3177 -4388 2158 255 29 32 chr6 69784006 69784559 -112630683 + L1PA15 LINE L1 352 902 -5885 4708 252 62 13 chr6 69784785 69785942 -112629300 + L1PA15 LINE L1 888 2111 -4676 422 48 0 16 chr6 69785942 69786004 -112629238 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 4708 252 62 13 chr6 69786004 69786086 -112629156 + L1PA15 LINE L1 2111 2188 -4599 * 8390 221 39 56 chr6 69786079 69788592 -112626650 + L1PA15 LINE L1 2409 4228 -2569 5304 147 12 3 chr6 69788592 69790180 -112625062 + L1PA15 LINE L1 5181 6808 -8 8390 221 39 56 chr6 69790180 69790770 -112624472 + L1PA15 LINE L1 4228 4827 -1970 29 60 0 0 chr6 69790828 69790878 -112624364 + AT_rich Low_complexity Low_complexity 1 50 0 973 246 0 5 chr6 69790878 69791085 -112624157 - MER2 DNA MER2_type -139 206 1 1744 251 45 0 chr6 69791085 69791551 -112623691 + L1MA8 LINE L1 3871 4357 -3208 * 5913 9 3 10 chr6 69791530 69792198 -112623044 + L1HS LINE L1 6892 7556 -18 333 75 30 15 chr6 69792198 69792265 -112622977 + (TAAAA)n Simple_repeat Simple_repeat 4 71 0 5913 9 3 10 chr6 69792265 69792281 -112622961 + L1HS LINE L1 7556 7571 -3 2532 119 31 31 chr6 69792323 69792770 -112622472 + L1MA1 LINE L1 5852 6298 -4 4094 179 33 21 chr6 69792789 69794353 -112620889 + L1MA8 LINE L1 6113 7705 -5 24 0 0 0 chr6 69794401 69794425 -112620817 + AT_rich Low_complexity Low_complexity 1 24 0 * 517 103 0 0 chr6 69794423 69794501 -112620741 - L1MA3 LINE L1 0 6305 6228 604 99 11 0 chr6 69794426 69794517 -112620725 - L1MA2 LINE L1 -2 6302 6211 516 275 6 6 chr6 69795406 69795566 -112619676 + MER8 DNA MER2_type 1 160 -79 261 0 0 0 chr6 69795632 69795661 -112619581 + (CA)n Simple_repeat Simple_repeat 2 30 0 234 214 0 82 chr6 69795740 69795838 -112619404 - L1MC4 LINE L1 -1339 6703 6614 1717 231 14 7 chr6 69797105 69797520 -112617722 + L1MA9 LINE L1 5742 6159 -153 184 284 54 0 chr6 69797965 69798039 -112617203 - MIR SINE MIR -108 154 77 239 259 17 0 chr6 69798604 69798662 -112616580 - L2 LINE L2 -5 3308 3250 1266 273 40 19 chr6 69799567 69800090 -112615152 - L1ME1 LINE L1 -5 6161 5628 438 299 15 54 chr6 69800087 69800291 -112614951 + L1MC3 LINE L1 15 210 -6330 * 246 32 0 0 chr6 69800440 69800468 -112614774 + (TG)n Simple_repeat Simple_repeat 1 59 0 246 32 0 0 chr6 69800468 69800499 -112614743 + (TG)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr6 69800673 69800703 -112614539 + AT_rich Low_complexity Low_complexity 1 30 0 1916 46 50 4 chr6 69801265 69801506 -112613736 + AluY SINE Alu 1 252 -59 521 194 0 0 chr6 69801619 69801717 -112613525 - FLAM_A SINE Alu -4 138 41 464 300 125 15 chr6 69801739 69802285 -112612957 + L1MC3 LINE L1 1105 1691 -4849 1844 43 0 0 chr6 69802285 69802518 -112612724 + L1P3 LINE L1 5513 5745 -409 669 229 83 57 chr6 69802509 69802810 -112612432 + L1MC3 LINE L1 1754 2062 -4659 * 918 214 128 40 chr6 69802918 69803148 -112612094 - L1MCa LINE L1 -4154 2410 2202 1837 150 75 3 chr6 69803148 69803481 -112611761 - MER46B DNA MER2_type 0 236 5 918 214 128 40 chr6 69803481 69803679 -112611563 - L1MCa LINE L1 -4362 2202 1944 372 290 49 16 chr6 69803732 69803915 -112611327 - L1MCa LINE L1 -5853 192 4 27 73 0 0 chr6 69805080 69805135 -112610107 + AT_rich Low_complexity Low_complexity 1 55 0 29 0 0 0 chr6 69805320 69805349 -112609893 + AT_rich Low_complexity Low_complexity 1 29 0 240 111 0 0 chr6 69807320 69807356 -112607886 + THE1C-int LTR MaLR 1326 1361 -219 26 64 0 0 chr6 69807496 69807543 -112607699 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr6 69807852 69807882 -112607360 + AT_rich Low_complexity Low_complexity 1 30 0 2066 150 16 44 chr6 69807984 69808370 -112606872 + THE1C LTR MaLR 1 375 0 9207 124 70 21 chr6 69808370 69809876 -112605366 + THE1C-int LTR MaLR 1 1580 0 2255 132 5 44 chr6 69809878 69810265 -112604977 + THE1C LTR MaLR 4 375 0 555 189 0 0 chr6 69810472 69810562 -112604680 + 5S rRNA rRNA 1 90 -31 1564 189 39 11 chr6 69811363 69811718 -112603524 - L1MA8 LINE L1 -275 6016 5652 499 248 24 0 chr6 69811823 69812029 -112603213 - L1M4 LINE L1 -3104 3042 2832 350 235 25 0 chr6 69812065 69812184 -112603058 + L1MC3 LINE L1 4130 4251 -2289 814 213 80 4 chr6 69812203 69812428 -112602814 + L1MC3 LINE L1 5902 6143 -2036 4410 176 12 14 chr6 69812428 69814487 -112600755 - L1MA4 LINE L1 -6 6294 4094 2136 232 56 8 chr6 69814489 69815119 -112600123 + L1MC3 LINE L1 6152 6811 -1368 45 0 0 0 chr6 69815141 69815186 -112600056 + AT_rich Low_complexity Low_complexity 1 45 0 1072 202 21 8 chr6 69815186 69815429 -112599813 + L1MC3 LINE L1 6793 7038 -1141 1406 134 53 50 chr6 69815536 69815835 -112599407 - MER41B LTR ERV1 -174 461 162 2240 72 14 0 chr6 69815858 69816136 -112599106 - AluSx SINE Alu -28 284 3 788 106 8 0 chr6 69816137 69816259 -112598983 - MER41A LTR ERV1 -380 174 52 2331 132 36 8 chr6 69816259 69816645 -112598597 - LTR9 LTR ERV1 0 612 216 1949 98 3 51 chr6 69816645 69816940 -112598302 + AluSx SINE Alu 1 281 -31 2533 48 0 13 chr6 69816941 69817254 -112597988 + AluY SINE Alu 1 309 -2 415 218 0 0 chr6 69818402 69818480 -112596762 + Tigger3b DNA MER2_type 2 79 -1152 1086 101 6 28 chr6 69818997 69819052 -112596190 + MER41B LTR ERV1 1 56 -579 3337 128 79 22 chr6 69819052 69819242 -112596000 + LTR9 LTR ERV1 1 179 -433 2572 52 3 3 chr6 69819242 69819552 -112595690 - AluY SINE Alu -1 310 1 2036 103 0 38 chr6 69819553 69819845 -112595397 - AluSx SINE Alu -31 281 1 3337 128 79 22 chr6 69819845 69820231 -112595011 + LTR9 LTR ERV1 178 612 0 1086 101 6 28 chr6 69820231 69820353 -112594889 + MER41B LTR ERV1 56 174 -461 2265 65 14 0 chr6 69820354 69820632 -112594610 + AluSx SINE Alu 3 284 -28 2953 89 36 28 chr6 69820655 69821125 -112594117 + MER41B LTR ERV1 162 635 0 1949 132 0 74 chr6 69824000 69824325 -112590917 + AluSx SINE Alu 1 301 -11 6275 140 28 18 chr6 69824325 69825196 -112590046 + Tigger3b DNA MER2_type 67 953 -2075 1348 209 72 14 chr6 69825196 69825473 -112589769 - AluJo SINE Alu -19 293 1 6275 140 28 18 chr6 69825473 69825753 -112589489 + Tigger3b DNA MER2_type 953 1229 -2 2483 70 0 3 chr6 69825761 69826062 -112589180 - AluSq SINE Alu -13 300 1 1541 172 0 34 chr6 69826066 69826333 -112588909 - AluJo SINE Alu -16 296 39 2210 116 0 0 chr6 69827078 69827370 -112587872 + AluSq SINE Alu 1 292 -21 1332 178 4 29 chr6 69827540 69827781 -112587461 + AluJo SINE Alu 63 297 -15 476 318 6 0 chr6 69828184 69828360 -112586882 - LTR33 LTR ERVL -2 519 343 660 374 100 18 chr6 69828402 69829060 -112586182 - L2 LINE L2 -1897 1417 706 1940 177 8 27 chr6 69829062 69829429 -112585813 + MLT2D LTR ERVL 1 360 -54 287 77 0 19 chr6 69829433 69829485 -112585757 + (GA)n Simple_repeat Simple_repeat 2 52 0 225 98 49 24 chr6 69829490 69829531 -112585711 + MLT2D LTR ERVL 513 554 0 727 266 70 0 chr6 69829729 69830071 -112585171 + L1M4 LINE L1 2957 3322 -2824 1081 212 107 17 chr6 69830123 69830304 -112584938 + MLT1E LTR MaLR 1 164 -429 345 47 0 0 chr6 69830304 69830347 -112584895 + (TC)n Simple_repeat Simple_repeat 1 43 0 1081 212 107 17 chr6 69830347 69830613 -112584629 + MLT1E LTR MaLR 164 585 -8 252 156 0 16 chr6 69830668 69830732 -112584510 + L1M4 LINE L1 3399 3461 -2685 1392 202 95 15 chr6 69830800 69831136 -112584106 - MLT1A1 LTR MaLR -2 363 1 6835 24 0 0 chr6 69831174 69832002 -112583240 - L1PA3 LINE L1 -3 6152 5325 * 25618 28 0 0 chr6 69832000 69835227 -112580015 + L1PA3 LINE L1 2095 5321 -825 1749 206 0 3 chr6 69835282 69835578 -112579664 - AluJo SINE Alu -17 295 1 407 343 35 0 chr6 69835874 69836046 -112579196 + MIR SINE MIR 2 179 -83 2215 108 3 10 chr6 69836120 69836426 -112578816 + AluSq SINE Alu 1 304 -9 284 221 250 10 chr6 69836436 69836540 -112578702 + MIR SINE MIR 124 252 -10 183 162 0 149 chr6 69837779 69837853 -112577389 + L2 LINE L2 3180 3242 -71 26 0 0 0 chr6 69837867 69837893 -112577349 + AT_rich Low_complexity Low_complexity 1 26 0 1671 172 7 26 chr6 69837925 69838228 -112577014 + AluJb SINE Alu 1 297 -15 2045 137 7 0 chr6 69838451 69838750 -112576492 + AluSx SINE Alu 1 301 -11 1344 34 11 6 chr6 69838757 69838936 -112576306 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1019 98 11 27 chr6 69838958 69839031 -112576211 + (GAAA)n Simple_repeat Simple_repeat 1 251 0 1019 98 11 27 chr6 69839031 69839214 -112576028 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chr6 69839565 69839593 -112575649 + AT_rich Low_complexity Low_complexity 1 28 0 208 290 130 0 chr6 69839901 69839970 -112575272 + MIR SINE MIR 30 107 -101 207 0 0 0 chr6 69840516 69840539 -112574703 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1058 171 128 13 chr6 69840702 69841000 -112574242 + L1MA10 LINE L1 6003 6334 0 1670 176 36 0 chr6 69841010 69841288 -112573954 + AluJb SINE Alu 2 289 -23 22 56 0 0 chr6 69841288 69841324 -112573918 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr6 69841330 69841359 -112573883 + AT_rich Low_complexity Low_complexity 1 29 0 1967 132 23 79 chr6 69841367 69841406 -112573836 - THE1C LTR MaLR -3 372 332 1759 147 23 33 chr6 69841406 69841706 -112573536 + AluSx SINE Alu 5 301 -11 1967 132 23 79 chr6 69841706 69842060 -112573182 - THE1C LTR MaLR -43 332 1 2226 112 30 0 chr6 69842930 69843234 -112572008 - AluSq SINE Alu 0 313 1 243 0 0 0 chr6 69843299 69843326 -112571916 + (CA)n Simple_repeat Simple_repeat 2 28 0 447 240 221 0 chr6 69843401 69843555 -112571687 + LTR50 LTR ERVL 35 222 -573 850 236 111 1 chr6 69843633 69843971 -112571271 + LTR50 LTR ERVL 344 794 -1 4500 204 198 82 chr6 69844534 69844647 -112570595 + L1MD1 LINE L1 1 100 -6440 2502 70 0 0 chr6 69844647 69844948 -112570294 + AluSc SINE Alu 1 301 -8 4500 204 198 82 chr6 69844948 69845666 -112569576 + L1MD1 LINE L1 100 733 -5807 2430 239 88 12 chr6 69845666 69845973 -112569269 + MER76 LTR ERV 1 284 -404 2081 109 30 0 chr6 69845973 69846277 -112568965 + AluSq SINE Alu 1 313 0 2430 239 88 12 chr6 69846277 69846290 -112568952 + MER76 LTR ERV 284 295 -393 2276 81 10 3 chr6 69846290 69846585 -112568657 + AluY SINE Alu 1 297 -14 2430 239 88 12 chr6 69846585 69846903 -112568339 + MER76 LTR ERV 295 688 0 4500 204 198 82 chr6 69846903 69847506 -112567736 + L1MD1 LINE L1 733 1265 -5275 2095 135 0 10 chr6 69847506 69847802 -112567440 + AluSx SINE Alu 1 293 -19 4500 204 198 82 chr6 69847802 69847814 -112567428 + L1MD1 LINE L1 1265 1274 -5266 2443 94 0 0 chr6 69847814 69848122 -112567120 + AluSc SINE Alu 1 308 -1 4500 204 198 82 chr6 69848122 69848427 -112566815 + L1MD1 LINE L1 1274 1542 -4998 2069 135 0 13 chr6 69848427 69848730 -112566512 - AluSx SINE Alu -13 299 1 4500 204 198 82 chr6 69848730 69849434 -112565808 + L1MD1 LINE L1 1542 2163 -4377 1497 212 11 0 chr6 69849434 69849717 -112565525 + AluJb SINE Alu 4 289 -23 1287 207 74 21 chr6 69849727 69850012 -112565230 + AluJb SINE Alu 3 302 0 4500 204 198 82 chr6 69850012 69850122 -112565120 + L1MD1 LINE L1 2170 2898 -3642 2167 137 0 6 chr6 69850122 69850435 -112564807 + AluSx SINE Alu 1 311 -1 1426 240 37 35 chr6 69850435 69850875 -112564367 + L1MD1 LINE L1 3621 4064 -2476 294 29 0 0 chr6 69850875 69850910 -112564332 + (CA)n Simple_repeat Simple_repeat 2 36 0 3949 169 50 28 chr6 69850931 69851007 -112564235 + L1MD1 LINE L1 5617 5690 -946 1673 180 41 0 chr6 69851007 69851302 -112563940 + AluJo SINE Alu 1 307 -5 3949 169 50 28 chr6 69851302 69852063 -112563179 + L1MD1 LINE L1 5690 6472 -164 795 181 0 0 chr6 69852066 69852199 -112563043 + FLAM_C SINE Alu 11 143 0 774 143 8 15 chr6 69852281 69852414 -112562828 + L1MD1 LINE L1 6505 6636 0 1892 166 3 3 chr6 69852869 69853181 -112562061 - AluSx SINE Alu 0 312 1 2062 117 20 3 chr6 69853412 69853710 -112561532 - AluSq SINE Alu -10 303 1 26 30 0 0 chr6 69854355 69854388 -112560854 + AT_rich Low_complexity Low_complexity 1 33 0 2166 102 3 0 chr6 69854709 69855017 -112560225 - AluSx SINE Alu 0 309 1 772 144 56 24 chr6 69855269 69855394 -112559848 + FLAM_A SINE Alu 1 129 -4 2080 107 20 20 chr6 69855820 69856119 -112559123 + AluSx SINE Alu 1 299 -13 668 316 55 29 chr6 69856119 69856426 -112558816 - MLT1L LTR MaLR -96 519 205 765 276 134 46 chr6 69856428 69856751 -112558491 + LTR33 LTR ERVL 100 464 -57 1935 172 3 0 chr6 69856751 69857054 -112558188 - AluSx SINE Alu -8 304 1 765 276 134 46 chr6 69857054 69857118 -112558124 + LTR33 LTR ERVL 464 521 0 475 276 0 87 chr6 69857434 69857630 -112557612 - MIR SINE MIR -50 212 34 550 340 15 5 chr6 69857844 69858044 -112557198 + MIR SINE MIR 13 214 -48 1889 128 3 31 chr6 69858151 69858593 -112556649 + AluSx SINE Alu 1 434 0 2369 91 0 3 chr6 69858776 69859085 -112556157 + AluY SINE Alu 1 308 -3 813 264 35 0 chr6 69859653 69859854 -112555388 - MIR SINE MIR -37 225 18 703 254 84 19 chr6 69860310 69860523 -112554719 - LTR33 LTR ERVL -40 481 255 2287 111 0 3 chr6 69860523 69860830 -112554412 + AluSx SINE Alu 1 306 -6 1003 105 0 0 chr6 69860843 69860976 -112554266 + AluSq/x SINE Alu 1 133 -180 795 305 34 4 chr6 69860999 69861261 -112553981 - LTR33 LTR ERVL -250 271 2 470 274 28 73 chr6 69861858 69862037 -112553205 + L2 LINE L2 2636 2806 -508 634 223 15 89 chr6 69862037 69862239 -112553003 - MER112 DNA MER1_type -4 256 70 204 40 0 0 chr6 69862275 69862300 -112552942 + (A)n Simple_repeat Simple_repeat 1 25 0 524 280 252 16 chr6 69862312 69862626 -112552616 + L2 LINE L2 2828 3215 -98 1043 99 14 0 chr6 69862626 69862767 -112552475 - AluSq/x SINE Alu -169 143 1 1992 142 7 3 chr6 69863120 69863416 -112551826 + AluSx SINE Alu 1 297 -15 475 174 45 34 chr6 69863416 69863594 -112551648 + GA-rich Low_complexity Low_complexity 1 180 0 314 135 0 0 chr6 69863784 69863847 -112551395 - Alu SINE Alu -2 300 251 2146 99 18 0 chr6 69864013 69864296 -112550946 + AluSx SINE Alu 1 288 -24 1481 99 119 109 chr6 69864493 69864620 -112550622 + AluSx SINE Alu 1 125 -187 8093 27 1 1 chr6 69864620 69865728 -112549514 + L1PA3 LINE L1 5045 6152 -3 1481 99 119 109 chr6 69865728 69865893 -112549349 + AluSx SINE Alu 125 296 -16 240 133 89 0 chr6 69866341 69866386 -112548856 - L2 LINE L2 -3 3310 3262 1892 159 89 19 chr6 69866498 69866868 -112548374 + MER61B LTR ERV1 1 396 -29 2236 85 7 10 chr6 69867288 69867582 -112547660 + AluSp SINE Alu 2 294 -19 4631 137 91 139 chr6 69868249 69869857 -112545385 - pTR5 LTR ERV1 0 2438 743 754 238 75 35 chr6 69870487 69870714 -112544528 - MIR SINE MIR -18 244 9 2168 109 3 0 chr6 69871392 69871686 -112543556 + AluSx SINE Alu 1 295 -17 2174 122 3 3 chr6 69871698 69872010 -112543232 + AluSx SINE Alu 1 312 0 639 242 106 82 chr6 69872123 69872329 -112542913 + L2 LINE L2 2600 2800 -513 2127 111 20 3 chr6 69872329 69872627 -112542615 + AluSx SINE Alu 1 303 -9 639 242 106 82 chr6 69872627 69872961 -112542281 + L2 LINE L2 2800 3313 0 2257 94 3 7 chr6 69873130 69873429 -112541813 + AluSp SINE Alu 1 298 -15 228 219 0 0 chr6 69875015 69875097 -112540145 + T-rich Low_complexity Low_complexity 1 82 0 1212 174 29 140 chr6 69875138 69875524 -112539718 - MER2 DNA MER2_type -1 343 1 717 282 79 56 chr6 69875580 69875640 -112539602 + HAL1 LINE L1 1735 1792 -715 2148 86 52 0 chr6 69875640 69875931 -112539311 + AluSc SINE Alu 1 306 -3 717 282 79 56 chr6 69875931 69876427 -112538815 + HAL1 LINE L1 1792 2304 -203 2121 81 3 50 chr6 69876427 69876751 -112538491 + AluSx SINE Alu 1 310 0 1076 122 11 28 chr6 69876755 69876935 -112538307 + AluSq SINE Alu 129 305 -8 1899 156 0 7 chr6 69877042 69877337 -112537905 - AluSx SINE Alu -19 293 1 5036 73 0 19 chr6 69877487 69878133 -112537109 + L1PA13 LINE L1 5530 6163 0 1139 193 63 102 chr6 69878165 69878595 -112536647 - L1M4 LINE L1 -2229 3917 3505 983 191 0 0 chr6 69878602 69878775 -112536467 - FRAM SINE Alu -3 173 1 3604 244 49 23 chr6 69878777 69880019 -112535223 - L1M4 LINE L1 -2622 3524 2251 2512 50 0 10 chr6 69880020 69880318 -112534924 - AluY SINE Alu -16 295 1 336 213 27 0 chr6 69880328 69880403 -112534839 - MIR SINE MIR -75 187 111 2300 109 0 0 chr6 69880828 69881132 -112534110 - AluSg1 SINE Alu -5 304 1 2298 107 7 0 chr6 69881145 69881455 -112533787 - AluSx SINE Alu 0 312 1 1627 160 16 29 chr6 69881527 69881839 -112533403 + LTR23 LTR ERV1 3 310 -127 2252 109 3 0 chr6 69881839 69882143 -112533099 + AluSq SINE Alu 5 309 -4 804 144 0 0 chr6 69882160 69882285 -112532957 + FLAM_C SINE Alu 6 130 -13 2044 127 0 7 chr6 69882310 69882601 -112532641 + AluSg SINE Alu 1 289 -21 493 191 0 0 chr6 69882616 69882705 -112532537 + LTR23 LTR ERV1 291 379 -58 567 0 0 0 chr6 69882709 69882772 -112532470 + (TA)n Simple_repeat Simple_repeat 1 63 0 804 122 57 8 chr6 69882773 69882896 -112532346 - FLAM_C SINE Alu -8 135 7 2122 119 3 0 chr6 69883602 69883896 -112531346 + AluSx SINE Alu 1 295 -17 1993 146 0 3 chr6 69883974 69884268 -112530974 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr6 69884268 69884292 -112530950 + AT_rich Low_complexity Low_complexity 1 24 0 267 186 118 0 chr6 69884394 69884417 -112530825 + MER63 DNA MER1_type 866 885 -176 2065 130 7 3 chr6 69884417 69884716 -112530526 - AluSq SINE Alu -13 300 1 267 186 118 0 chr6 69884716 69884794 -112530448 + MER63 DNA MER1_type 885 979 -82 305 282 160 17 chr6 69884840 69884905 -112530337 + L2 LINE L2 3107 3161 -152 186 43 0 0 chr6 69884905 69884928 -112530314 + (TA)n Simple_repeat Simple_repeat 1 23 0 305 282 160 17 chr6 69884928 69885043 -112530199 + L2 LINE L2 3161 3313 0 495 200 154 0 chr6 69885145 69885275 -112529967 - MIR SINE MIR -57 205 56 578 194 99 26 chr6 69885296 69885487 -112529755 - L1MC5 LINE L1 -23 7938 7734 1003 235 28 20 chr6 69886159 69886414 -112528828 - MIR SINE MIR 0 262 6 1790 123 8 16 chr6 69886859 69887110 -112528132 - AluSx SINE Alu -63 249 1 284 273 0 0 chr6 69887195 69887250 -112527992 - L2 LINE L2 -85 3187 3133 244 326 113 7 chr6 69887756 69887897 -112527345 + MIR SINE MIR 63 218 -44 1702 147 64 4 chr6 69888108 69888373 -112526869 + AluSx SINE Alu 1 281 -31 888 124 16 0 chr6 69889202 69889331 -112525911 + AluSg SINE Alu 1 131 -179 234 0 0 0 chr6 69889331 69889357 -112525885 + (A)n Simple_repeat Simple_repeat 1 26 0 1634 117 75 0 chr6 69889545 69889785 -112525457 - AluSq SINE Alu -14 299 42 665 198 0 0 chr6 69889907 69890013 -112525229 + FLAM_C SINE Alu 5 110 -33 23 68 0 0 chr6 69890042 69890086 -112525156 + AT_rich Low_complexity Low_complexity 1 44 0 306 377 63 13 chr6 69890764 69890923 -112524319 - MIR3 SINE MIR -23 185 19 2160 113 37 0 chr6 69891092 69891392 -112523850 + AluSp SINE Alu 1 311 -2 2089 123 3 0 chr6 69892064 69892348 -112522894 + AluSx SINE Alu 5 289 -23 2183 121 0 0 chr6 69892380 69892670 -112522572 + AluSx SINE Alu 1 290 -22 2202 108 10 7 chr6 69892680 69892985 -112522257 + AluSq SINE Alu 1 306 -7 1665 166 43 65 chr6 69893009 69893116 -112522126 + MLT1B LTR MaLR 1 109 -300 2119 133 0 0 chr6 69893116 69893417 -112521825 + AluSx SINE Alu 1 301 -11 1665 166 43 65 chr6 69893417 69893710 -112521532 + MLT1B LTR MaLR 109 406 -3 1995 236 37 91 chr6 69893952 69894686 -112520556 + L2 LINE L2 2049 2742 -572 1064 183 0 0 chr6 69894686 69894861 -112520381 + FRAM SINE Alu 2 176 0 654 199 0 3 chr6 69894910 69895135 -112520107 + AluJo SINE Alu 2 296 -16 255 270 33 99 chr6 69895212 69895364 -112519878 + L2 LINE L2 2911 3052 -261 287 177 65 0 chr6 69895364 69895426 -112519816 + MER63 DNA MER1_type 3 68 -993 819 213 15 30 chr6 69895430 69895627 -112519615 + MER63 DNA MER1_type 595 788 -273 2164 118 0 3 chr6 69895627 69895923 -112519319 + AluSq SINE Alu 1 295 -18 2136 112 10 3 chr6 69896110 69896406 -112518836 + AluSq SINE Alu 1 298 -15 1170 175 40 44 chr6 69896454 69896706 -112518536 + MLT1A2 LTR MaLR 1 251 -123 2479 81 0 3 chr6 69897385 69897695 -112517547 + AluY SINE Alu 1 309 -2 23 0 0 0 chr6 69897695 69897718 -112517524 + AT_rich Low_complexity Low_complexity 1 23 0 2178 123 0 3 chr6 69897918 69898228 -112517014 + AluSx SINE Alu 1 309 -3 383 304 73 78 chr6 69898671 69899053 -112516189 + Charlie8 DNA MER1_type 13 276 -2141 2420 82 0 3 chr6 69899053 69899356 -112515886 + AluY SINE Alu 1 302 -9 1664 127 0 4 chr6 69899367 69899603 -112515639 + AluSq SINE Alu 1 235 -78 642 267 154 15 chr6 69899637 69899903 -112515339 + Charlie8 DNA MER1_type 379 681 -1736 180 0 0 0 chr6 69900042 69900062 -112515180 + (A)n Simple_repeat Simple_repeat 1 20 0 252 59 59 0 chr6 69900773 69900824 -112514418 + T-rich Low_complexity Low_complexity 2 55 0 830 278 81 86 chr6 69901058 69901616 -112513626 - MLT1H1 LTR MaLR 0 555 1 834 164 0 50 chr6 69902370 69902558 -112512684 - FLAM_C SINE Alu 0 181 1 203 172 0 35 chr6 69902669 69902727 -112512515 + CT-rich Low_complexity Low_complexity 2 57 0 748 150 20 9 chr6 69903018 69903154 -112512088 + L1MB7 LINE L1 5938 6059 -125 461 285 73 97 chr6 69903468 69904026 -112511216 - MLT1L LTR MaLR -57 558 14 247 295 33 98 chr6 69904133 69904174 -112511068 - MIR3 SINE MIR -13 195 153 2126 107 0 4 chr6 69904174 69904479 -112510763 + AluY SINE Alu 1 304 0 247 295 33 98 chr6 69904479 69904558 -112510684 - MIR3 SINE MIR -55 153 82 579 235 8 30 chr6 69904581 69904713 -112510529 - L2 LINE L2 0 3313 3185 2008 127 0 45 chr6 69905334 69905666 -112509576 + L1P5 LINE L1 5471 5787 -367 1632 79 0 19 chr6 69905766 69905980 -112509262 - AluY SINE Alu -101 210 1 30 0 0 0 chr6 69905988 69906018 -112509224 + AT_rich Low_complexity Low_complexity 1 30 0 347 230 32 149 chr6 69906417 69906665 -112508577 + L2 LINE L2 3095 3313 0 1490 183 12 0 chr6 69906781 69907021 -112508221 + AluSx SINE Alu 1 243 -69 2102 138 0 0 chr6 69907037 69907335 -112507907 - AluSx SINE Alu -14 298 1 290 333 0 0 chr6 69907336 69907423 -112507819 - L2 LINE L2 -4 3309 3223 272 314 97 0 chr6 69907537 69907661 -112507581 - MLT1L LTR MaLR -125 490 355 1558 88 0 19 chr6 69907703 69907908 -112507334 - AluSg/x SINE Alu -15 297 97 238 143 0 0 chr6 69907908 69907943 -112507299 - Alu SINE Alu -266 35 1 739 174 98 84 chr6 69907967 69908295 -112506947 - MLT1B LTR MaLR 0 390 1 1159 147 6 0 chr6 69908327 69908504 -112506738 + AluJo SINE Alu 121 298 -14 1862 122 3 68 chr6 69908555 69908876 -112506366 + AluSx SINE Alu 1 300 -12 5101 86 18 0 chr6 69909372 69910038 -112505204 - L1PA13 LINE L1 0 6163 5486 2263 110 0 3 chr6 69910064 69910364 -112504878 - AluSx SINE Alu -13 299 1 570 263 100 70 chr6 69910806 69911009 -112504233 - LTR40a LTR ERVL -120 399 203 1419 166 129 14 chr6 69911009 69911150 -112504092 - AluJb SINE Alu -2 310 187 293 0 27 0 chr6 69911150 69911187 -112504055 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2129 121 3 0 chr6 69911187 69911469 -112503773 - AluSx SINE Alu -29 283 1 1419 166 129 14 chr6 69911469 69911604 -112503638 - AluJb SINE Alu -124 188 1 570 263 100 70 chr6 69911604 69911670 -112503572 - LTR40a LTR ERVL -316 203 122 2121 129 3 0 chr6 69912033 69912328 -112502914 + AluSx SINE Alu 1 296 -16 514 249 40 46 chr6 69912576 69912762 -112502480 - MIR SINE MIR -42 220 36 1128 130 5 38 chr6 69913004 69913189 -112502053 + AluSq SINE Alu 135 313 0 1901 176 0 3 chr6 69913692 69914004 -112501238 - AluSx SINE Alu -1 311 1 1958 133 11 11 chr6 69914009 69914341 -112500901 - AluSx SINE Alu 0 333 2 22 35 0 0 chr6 69914346 69914375 -112500867 + AT_rich Low_complexity Low_complexity 1 29 0 264 151 47 0 chr6 69914839 69914895 -112500347 - MLT2B1 LTR ERVL 0 520 349 1056 162 17 0 chr6 69914901 69915074 -112500168 - AluSg/x SINE Alu -2 310 135 2068 171 62 8 chr6 69915085 69915470 -112499772 - MLT2B1 LTR ERVL -84 436 31 2489 53 10 3 chr6 69916083 69916382 -112498860 + AluSq SINE Alu 1 301 -12 2491 86 0 0 chr6 69918282 69918584 -112496658 - AluSx SINE Alu -10 302 1 436 213 0 0 chr6 69918963 69919043 -112496199 - FLAM SINE Alu -10 133 54 679 256 119 0 chr6 69919510 69919737 -112495505 - MIR SINE MIR -4 258 5 2019 142 30 0 chr6 69919781 69920084 -112495158 - AluSx SINE Alu 0 312 1 30 0 0 0 chr6 69920250 69920280 -112494962 + AT_rich Low_complexity Low_complexity 1 30 0 2057 115 7 0 chr6 69920280 69920559 -112494683 - AluSx SINE Alu -31 281 1 298 220 78 78 chr6 69920614 69920755 -112494487 + L2 LINE L2 3173 3313 0 506 261 164 15 chr6 69920895 69920953 -112494289 - MIR SINE MIR -3 259 211 656 211 211 0 chr6 69920953 69921086 -112494156 - FRAM SINE Alu -5 161 1 506 261 164 15 chr6 69921086 69921222 -112494020 - MIR SINE MIR -51 211 36 1302 156 136 27 chr6 69921332 69921589 -112493653 - AluJo SINE Alu -11 301 17 2173 105 0 13 chr6 69921601 69921905 -112493337 + AluSx SINE Alu 1 300 -12 2303 107 3 0 chr6 69922249 69922548 -112492694 - AluSp SINE Alu -9 304 5 351 271 112 9 chr6 69922813 69922920 -112492322 + L2 LINE L2 3144 3261 -11 227 276 204 0 chr6 69923676 69923774 -112491468 + MIR SINE MIR 61 178 -84 229 368 0 0 chr6 69924654 69924741 -112490501 + MIR SINE MIR 13 99 -163 2337 96 3 13 chr6 69924741 69925054 -112490188 - AluSp SINE Alu -2 311 2 2148 133 0 3 chr6 69925063 69925363 -112489879 - AluSx SINE Alu -13 299 1 2097 111 38 3 chr6 69925424 69925713 -112489529 + AluSq SINE Alu 1 299 -14 425 315 128 15 chr6 69925737 69926004 -112489238 + MLT1L LTR MaLR 236 608 0 1676 191 3 13 chr6 69926135 69926434 -112488808 - AluJo SINE Alu -16 296 1 312 246 74 41 chr6 69927595 69927717 -112487525 - LTR67 LTR ERVL 0 557 432 1885 141 0 7 chr6 69927967 69928258 -112486984 + AluJb SINE Alu 1 289 -23 21 0 0 0 chr6 69928315 69928336 -112486906 + AT_rich Low_complexity Low_complexity 1 21 0 1827 140 7 33 chr6 69928481 69928576 -112486666 - AluSq SINE Alu -21 292 196 2380 84 3 0 chr6 69928576 69928874 -112486368 - AluY SINE Alu -12 299 1 1827 140 7 33 chr6 69928874 69929078 -112486164 - AluSq SINE Alu -117 196 1 1768 114 0 4 chr6 69929629 69929865 -112485377 + AluSx SINE Alu 1 235 -77 684 36 0 0 chr6 69929888 69929971 -112485271 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 306 0 0 0 chr6 69929984 69930018 -112485224 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1838 133 34 0 chr6 69930020 69930283 -112484959 - AluSg SINE Alu -38 272 1 22 0 0 0 chr6 69930501 69930523 -112484719 + AT_rich Low_complexity Low_complexity 1 22 0 2112 96 4 4 chr6 69930566 69930897 -112484345 - AluSg SINE Alu 0 331 1 292 285 35 62 chr6 69931209 69931353 -112483889 - LTR16C LTR ERVL -9 482 343 686 343 52 46 chr6 69931414 69931912 -112483330 - ERVL LTR ERVL -1910 3854 3354 266 273 58 33 chr6 69932001 69932122 -112483120 + LTR67 LTR ERVL 432 555 -2 21 0 0 0 chr6 69932729 69932750 -112482492 + AT_rich Low_complexity Low_complexity 1 21 0 2382 91 0 7 chr6 69932969 69933277 -112481965 + AluSp SINE Alu 1 306 -7 34 72 0 0 chr6 69933325 69933394 -112481848 + AT_rich Low_complexity Low_complexity 1 69 0 2219 108 7 0 chr6 69933403 69933699 -112481543 - AluSx SINE Alu -14 298 1 344 229 28 37 chr6 69933699 69933808 -112481434 + L1ME4a LINE L1 5815 5922 -199 24 32 0 0 chr6 69933843 69933874 -112481368 + AT_rich Low_complexity Low_complexity 1 31 0 359 301 67 18 chr6 69934054 69934217 -112481025 - MIR3 SINE MIR -14 194 20 192 97 0 0 chr6 69934783 69934814 -112480428 + (T)n Simple_repeat Simple_repeat 1 31 0 298 352 45 0 chr6 69934904 69934992 -112480250 - L2 LINE L2 -20 3293 3202 2309 118 0 3 chr6 69934996 69935309 -112479933 - AluSx SINE Alu 0 312 1 2412 99 0 6 chr6 69935577 69935890 -112479352 - AluSq SINE Alu -2 311 1 21 0 0 0 chr6 69936244 69936265 -112478977 + AT_rich Low_complexity Low_complexity 1 21 0 808 291 133 31 chr6 69936287 69936415 -112478827 - MLT1L LTR MaLR -35 580 467 2153 125 0 0 chr6 69936415 69936712 -112478530 - AluSx SINE Alu -10 302 6 808 291 133 31 chr6 69936712 69937071 -112478171 - MLT1L LTR MaLR -148 467 43 286 309 74 0 chr6 69937201 69937282 -112477960 - L2 LINE L2 -4 3309 3223 595 273 129 33 chr6 69937296 69937659 -112477583 - MLT1L LTR MaLR -11 604 207 2256 123 0 0 chr6 69937963 69938271 -112476971 + AluSx SINE Alu 1 308 -4 23 54 0 0 chr6 69938349 69938386 -112476856 + AT_rich Low_complexity Low_complexity 1 37 0 183 42 0 0 chr6 69938557 69938581 -112476661 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1902 140 4 0 chr6 69938590 69938861 -112476381 - AluSx SINE Alu -40 272 1 1519 190 24 10 chr6 69939043 69939338 -112475904 - AluJb SINE Alu -13 299 1 1033 166 0 0 chr6 69939345 69939502 -112475740 - FRAM SINE Alu -20 156 1 2001 131 7 0 chr6 69939547 69939865 -112475377 - AluSq SINE Alu 0 320 1 434 276 160 44 chr6 69940789 69940927 -112474315 + MIR SINE MIR 12 133 -129 1114 256 140 47 chr6 69940927 69941391 -112473851 + MLT1J LTR MaLR 3 509 -2 434 276 160 44 chr6 69941391 69941477 -112473765 + MIR SINE MIR 133 262 0 240 122 0 0 chr6 69941958 69941999 -112473243 + (CA)n Simple_repeat Simple_repeat 2 42 0 2120 116 7 7 chr6 69942206 69942509 -112472733 + AluSx SINE Alu 1 303 -9 324 318 119 8 chr6 69942900 69943026 -112472216 - MIR3 SINE MIR -66 142 3 1045 217 50 71 chr6 69943190 69943367 -112471875 - MER46C DNA MER2_type -23 315 147 2128 108 28 0 chr6 69943367 69943653 -112471589 + AluSq SINE Alu 1 294 -19 1045 217 50 71 chr6 69943653 69943797 -112471445 - MER46C DNA MER2_type -191 147 1 2082 122 0 14 chr6 69944679 69945008 -112470234 + AluSx SINE Alu 1 325 0 2759 77 58 3 chr6 69945210 69945604 -112469638 + L1PA8 LINE L1 5785 6172 0 540 278 70 27 chr6 69946207 69946394 -112468848 - MIR3 SINE MIR -13 195 1 2082 142 0 3 chr6 69947197 69947500 -112467742 - AluSx SINE Alu -10 302 1 1465 103 108 5 chr6 69947634 69947874 -112467368 + AluSx SINE Alu 50 311 0 1255 86 81 5 chr6 69947989 69948175 -112467067 - MER30 DNA MER1_type -30 200 1 21 0 0 0 chr6 69948281 69948302 -112466940 + AT_rich Low_complexity Low_complexity 1 21 0 1873 156 7 10 chr6 69948323 69948618 -112466624 - AluSx SINE Alu -17 295 2 195 344 41 25 chr6 69949425 69949547 -112465695 - MER5A DNA MER1_type -22 167 44 1715 216 230 6 chr6 69949561 69950210 -112465032 + LTR50 LTR ERVL 2 795 0 2242 124 0 0 chr6 69950377 69950684 -112464558 + AluSx SINE Alu 1 307 -5 1970 117 37 0 chr6 69950862 69951135 -112464107 + AluSc SINE Alu 1 283 -26 312 83 0 0 chr6 69951135 69951183 -112464059 + (TA)n Simple_repeat Simple_repeat 2 49 0 312 346 31 15 chr6 69951949 69952079 -112463163 - MIR SINE MIR -56 152 21 697 216 0 0 chr6 69952649 69952765 -112462477 + FLAM_A SINE Alu 1 116 -17 1360 177 3 116 chr6 69952777 69953105 -112462137 + AluSp SINE Alu 1 291 -22 2041 92 0 0 chr6 69953178 69953428 -112461814 + AluSq SINE Alu 38 287 -26 495 145 0 0 chr6 69953428 69953511 -112461731 + (TA)n Simple_repeat Simple_repeat 2 84 0 226 100 0 0 chr6 69953513 69953553 -112461689 - LTR66 LTR ERVL -171 439 400 408 260 42 0 chr6 69954818 69954914 -112460328 + MER91C DNA MER1_type 4 103 -37 1255 199 99 74 chr6 69955629 69955847 -112459395 - MER69 DNA AcHobo -1 2525 2314 1546 166 97 22 chr6 69955847 69956125 -112459117 - AluJb SINE Alu -3 299 1 1255 199 99 74 chr6 69956125 69956166 -112459076 - MER69 DNA AcHobo -212 2314 2276 1927 97 97 0 chr6 69956166 69956433 -112458809 - AluSg1 SINE Alu -16 293 1 1255 199 99 74 chr6 69956433 69956675 -112458567 - MER69 DNA AcHobo -250 2276 2010 1232 241 105 35 chr6 69956671 69957099 -112458143 - MER69 DNA AcHobo -1966 560 103 * 1944 157 0 0 chr6 69957434 69957727 -112457515 + AluSx SINE Alu 1 293 -19 303 363 22 0 chr6 69957915 69958050 -112457192 + L3 LINE CR1 636 773 -804 234 0 0 0 chr6 69958167 69958193 -112457049 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1907 159 3 0 chr6 69958193 69958477 -112456765 - AluSx SINE Alu -27 285 1 342 61 0 0 chr6 69958772 69958821 -112456421 + (CA)n Simple_repeat Simple_repeat 1 49 0 647 203 55 16 chr6 69958868 69958996 -112456246 + FLAM_A SINE Alu 1 133 -9 928 93 25 0 chr6 69959002 69959120 -112456122 + AluSq/x SINE Alu 3 123 -189 1375 126 16 0 chr6 69959209 69959399 -112455843 + AluSq SINE Alu 95 287 -26 1960 120 13 20 chr6 69959518 69959817 -112455425 + AluSx SINE Alu 1 297 -15 282 136 0 0 chr6 69960164 69960208 -112455034 - AluSp/q SINE Alu -7 296 253 1329 133 0 0 chr6 69960208 69960404 -112454838 - AluSx SINE Alu -113 199 4 2005 118 7 0 chr6 69960404 69960693 -112454549 + AluSq SINE Alu 21 311 -2 24 85 0 0 chr6 69961084 69961143 -112454099 + AT_rich Low_complexity Low_complexity 1 59 0 48 32 0 0 chr6 69961355 69961417 -112453825 + AT_rich Low_complexity Low_complexity 1 62 0 784 213 30 0 chr6 69961552 69961721 -112453521 + MER5A DNA MER1_type 13 186 -3 478 244 35 17 chr6 69961721 69961834 -112453408 + MER5B DNA MER1_type 25 139 -39 892 161 44 28 chr6 69963029 69963209 -112452033 - MER5A DNA MER1_type 0 189 7 189 0 0 0 chr6 69963216 69963237 -112452005 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1959 142 0 3 chr6 69963240 69963528 -112451714 - AluSx SINE Alu -25 287 1 492 291 96 54 chr6 69963786 69963830 -112451412 + L1ME LINE L1 5265 5306 -849 2120 91 35 11 chr6 69963830 69964115 -112451127 + AluSc SINE Alu 1 292 -17 492 291 96 54 chr6 69964115 69964447 -112450795 + L1ME LINE L1 5306 5652 -503 2153 127 0 19 chr6 69964675 69964991 -112450251 + AluSx SINE Alu 3 312 0 1260 123 10 30 chr6 69965140 69965343 -112449899 + AluSg/x SINE Alu 92 290 -22 398 92 0 15 chr6 69965343 69965408 -112449834 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 1616 116 46 4 chr6 69965644 69965885 -112449357 + AluSg SINE Alu 38 288 -22 406 307 157 22 chr6 69965944 69966257 -112448985 + L2 LINE L2 1343 1697 -1617 2977 80 3 5 chr6 69966339 69966357 -112448885 + L1PB1 LINE L1 5763 5780 -371 360 0 0 0 chr6 69966357 69966397 -112448845 + (TG)n Simple_repeat Simple_repeat 2 41 0 2977 80 3 5 chr6 69966397 69966768 -112448474 + L1PB1 LINE L1 5780 6151 0 373 264 194 5 chr6 69967094 69967295 -112447947 + L2 LINE L2 2464 2702 -612 475 203 75 15 chr6 69967329 69967462 -112447780 - L1MC5 LINE L1 -76 7885 7745 404 204 45 11 chr6 69967505 69967593 -112447649 - MER81 DNA DNA 0 114 24 300 325 129 49 chr6 69967601 69967887 -112447355 + L2 LINE L2 3005 3313 0 4677 212 63 44 chr6 69968535 69969662 -112445580 - L1MC4 LINE L1 -7 8035 6880 2323 110 0 3 chr6 69969662 69969972 -112445270 + AluSx SINE Alu 1 309 -3 4677 212 63 44 chr6 69969972 69970099 -112445143 - L1MC4 LINE L1 -1162 6880 6757 441 156 5 254 chr6 69970100 69970305 -112444937 - L1MC4a LINE L1 -1242 6566 6413 * 3177 151 56 64 chr6 69970287 69970758 -112444484 + L1MA9 LINE L1 5571 6035 -277 2094 136 0 0 chr6 69970758 69971053 -112444189 + AluSq SINE Alu 1 295 -18 3177 151 56 64 chr6 69971053 69971329 -112443913 + L1MA9 LINE L1 6035 6312 0 2228 126 0 0 chr6 69971522 69971824 -112443418 - AluSx SINE Alu -10 302 1 2564 55 0 19 chr6 69971833 69972145 -112443097 - AluY SINE Alu -5 306 1 272 276 38 48 chr6 69972401 69972506 -112442736 + L2 LINE L2 2992 3095 -177 654 241 174 5 chr6 69972564 69972759 -112442483 + MIR SINE MIR 32 259 -3 267 279 43 86 chr6 69972818 69972958 -112442284 + L2 LINE L2 3136 3269 -3 3232 111 27 27 chr6 69973911 69974435 -112440807 + L1MA5A LINE L1 5768 6291 -6 198 0 0 0 chr6 69974947 69974969 -112440273 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 1903 133 3 7 chr6 69974975 69975260 -112439982 - AluSx SINE Alu -28 284 1 2167 115 0 0 chr6 69975414 69975700 -112439542 - AluSx SINE Alu -26 286 1 323 298 119 30 chr6 69975702 69975875 -112439367 - L1ME4a LINE L1 -35 6086 5930 7743 30 21 1 chr6 69975875 69977280 -112437962 - L1PA4 LINE L1 -2 6153 4729 323 298 119 30 chr6 69977280 69977408 -112437834 - L1ME4a LINE L1 -191 5930 5758 1995 112 40 0 chr6 69978850 69979128 -112436114 + AluSx SINE Alu 1 289 -23 2188 121 10 0 chr6 69980027 69980325 -112434917 - AluSx SINE Alu -11 301 1 23 33 0 0 chr6 69980478 69980508 -112434734 + AT_rich Low_complexity Low_complexity 1 30 0 1319 173 50 73 chr6 69980514 69980815 -112434427 - AluJb SINE Alu -18 294 1 251 282 175 58 chr6 69981378 69981481 -112433761 - L2 LINE L2 -21 3251 3137 26 0 0 0 chr6 69981591 69981617 -112433625 + AT_rich Low_complexity Low_complexity 1 26 0 1912 124 24 24 chr6 69981622 69981913 -112433329 + AluSx SINE Alu 5 295 -17 216 325 86 48 chr6 69981949 69982217 -112433025 - L2 LINE L2 -343 2971 2694 2156 73 66 0 chr6 69982230 69982504 -112432738 - AluSg SINE Alu -18 292 1 226 191 15 15 chr6 69982594 69982662 -112432580 + GA-rich Low_complexity Low_complexity 1 68 0 365 310 114 72 chr6 69982771 69983148 -112432094 - L2 LINE L2 -831 2483 2091 356 210 74 0 chr6 69983226 69983307 -112431935 + MIR SINE MIR 167 253 -9 2336 101 0 0 chr6 69983799 69984097 -112431145 + AluSg SINE Alu 1 298 -12 306 232 0 0 chr6 69984108 69984164 -112431078 + AluS SINE Alu 2 57 -251 748 115 0 0 chr6 69984164 69984260 -112430982 - AluJ/FLAM SINE Alu -215 97 2 881 213 30 34 chr6 69984440 69984473 -112430769 - MER5C DNA MER1_type -89 235 203 1681 113 0 0 chr6 69984473 69984703 -112430539 + AluSq SINE Alu 84 313 0 881 213 30 34 chr6 69984703 69984737 -112430505 - MER5C DNA MER1_type -121 203 170 1969 133 10 17 chr6 69984737 69985038 -112430204 - AluSx SINE Alu -13 299 1 881 213 30 34 chr6 69985038 69985204 -112430038 - MER5C DNA MER1_type -154 170 2 446 323 179 5 chr6 69985483 69985706 -112429536 + MIR SINE MIR 1 262 0 2398 94 3 0 chr6 69986525 69986832 -112428410 - AluSp SINE Alu -4 309 2 493 333 153 23 chr6 69987366 69988039 -112427203 + L2 LINE L2 2535 3302 -11 210 368 52 0 chr6 69988065 69988201 -112427041 - L2 LINE L2 -1109 2205 2063 2325 91 0 3 chr6 69988337 69988633 -112426609 + AluSx SINE Alu 11 305 -7 1103 196 5 14 chr6 69989340 69989559 -112425683 - AluJo SINE Alu -8 304 88 21 0 0 0 chr6 69989893 69989914 -112425328 + AT_rich Low_complexity Low_complexity 1 21 0 14600 132 49 7 chr6 69990276 69990433 -112424809 - Tigger1 DNA MER2_type -1 2417 2268 2395 184 91 22 chr6 69990433 69990894 -112424348 - LTR42 LTR ERVL 0 495 3 14600 132 49 7 chr6 69990894 69993033 -112422209 - Tigger1 DNA MER2_type -150 2268 24 22 56 0 0 chr6 69993050 69993086 -112422156 + AT_rich Low_complexity Low_complexity 1 36 0 1863 125 3 31 chr6 69993598 69993885 -112421357 - AluSx SINE Alu -20 292 14 1530 154 42 8 chr6 69994427 69994686 -112420556 + AluSq SINE Alu 37 304 -9 237 204 20 10 chr6 69996903 69997001 -112418241 + (CCG)n Simple_repeat Simple_repeat 2 100 0 437 315 131 58 chr6 69997148 69997890 -112417352 - L1M2 LINE L1 -5458 1391 596 253 158 40 13 chr6 70000413 70000489 -112414753 + (TA)n Simple_repeat Simple_repeat 2 79 0 1818 102 20 4 chr6 70001892 70002138 -112413104 - AluSx SINE Alu -13 299 50 212 221 15 15 chr6 70002168 70002236 -112413006 + (TTATA)n Simple_repeat Simple_repeat 3 70 0 21 36 0 0 chr6 70003427 70003455 -112411787 + AT_rich Low_complexity Low_complexity 1 28 0 386 221 113 74 chr6 70003925 70004156 -112411086 - L1ME2 LINE L1 -9 6155 5916 21 36 0 0 chr6 70005340 70005368 -112409874 + AT_rich Low_complexity Low_complexity 1 28 0 194 231 250 28 chr6 70006057 70006165 -112409077 + MIR SINE MIR 42 173 -89 182 185 259 37 chr6 70007976 70008057 -112407185 - MIR SINE MIR -113 149 51 1280 124 22 0 chr6 70008111 70008296 -112406946 - AluSp SINE Alu -11 302 114 186 43 0 0 chr6 70008830 70008853 -112406389 + (TG)n Simple_repeat Simple_repeat 2 24 0 1946 152 3 3 chr6 70008874 70009170 -112406072 - AluJb SINE Alu -16 296 1 207 0 0 0 chr6 70009190 70009213 -112406029 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 949 76 8 0 chr6 70009213 70009332 -112405910 - AluY SINE Alu -191 120 1 345 176 120 19 chr6 70009417 70009525 -112405717 + MER103 DNA DNA 14 132 -34 244 179 18 18 chr6 70009533 70009589 -112405653 - LTR33 LTR ERVL 0 521 466 10309 124 25 0 chr6 70009598 70012079 -112403163 + L1PA10 LINE L1 3673 6166 -2 2056 94 14 0 chr6 70012081 70012401 -112402841 - AluSx SINE Alu 0 325 2 440 293 139 19 chr6 70012450 70012774 -112402468 - LTR33 LTR ERVL -157 364 2 1726 128 4 34 chr6 70013003 70013326 -112401916 - AluSx SINE Alu 0 339 25 1277 107 19 0 chr6 70013329 70013535 -112401707 + L1P LINE L1 5156 5365 -781 2233 72 3 3 chr6 70013535 70013825 -112401417 + AluY SINE Alu 1 290 -21 2583 128 22 27 chr6 70014261 70014708 -112400534 - MER65A LTR ERV1 0 445 1 2422 97 0 7 chr6 70015316 70015626 -112399616 + AluSx SINE Alu 1 308 -4 2092 98 36 39 chr6 70015637 70015943 -112399299 + AluSc SINE Alu 3 307 -2 291 368 86 0 chr6 70016115 70016232 -112399010 - L2 LINE L2 0 3272 3146 2231 121 0 6 chr6 70016432 70016747 -112398495 + AluSq SINE Alu 1 313 0 1385 231 128 59 chr6 70017127 70017535 -112397707 + MLT1F LTR MaLR 1 452 -90 1652 130 111 11 chr6 70017535 70017805 -112397437 - AluSx SINE Alu -15 297 1 1385 231 128 59 chr6 70017805 70017903 -112397339 + MLT1F LTR MaLR 452 542 0 960 194 106 37 chr6 70017910 70018287 -112396955 - L1MC5 LINE L1 -170 7791 7389 367 187 134 22 chr6 70018345 70018479 -112396763 - L1MC5 LINE L1 -567 7394 7246 2208 97 21 0 chr6 70018505 70018794 -112396448 - AluSq SINE Alu -18 295 1 843 276 27 35 chr6 70018814 70019294 -112395948 - L1MC5 LINE L1 -826 6982 6614 1719 185 30 6 chr6 70019309 70019644 -112395598 + L1PA16 LINE L1 5805 6147 -19 2203 98 3 7 chr6 70019647 70019942 -112395300 - AluSp SINE Alu -19 294 1 1149 199 3 51 chr6 70019965 70020261 -112394981 + L1MB8 LINE L1 5896 6177 -1 27 49 0 0 chr6 70020686 70020727 -112394515 + AT_rich Low_complexity Low_complexity 1 41 0 1735 186 3 0 chr6 70020778 70021079 -112394163 + AluJb SINE Alu 1 302 -10 2043 147 0 3 chr6 70021130 70021429 -112393813 + AluSx SINE Alu 1 298 -14 1449 108 123 0 chr6 70021529 70021797 -112393445 - L1MA7 LINE L1 -2 6289 5989 291 175 0 26 chr6 70021798 70021912 -112393330 + (TTAA)n Simple_repeat Simple_repeat 1 111 0 255 288 69 85 chr6 70022260 70022286 -112392956 + MLT1L LTR MaLR 129 154 -461 466 239 78 24 chr6 70022286 70022453 -112392789 + MER5B DNA MER1_type 1 176 -2 255 288 69 85 chr6 70022453 70022745 -112392497 + MLT1L LTR MaLR 154 442 -173 1541 302 39 12 chr6 70022750 70023310 -112391932 - MLT2E LTR ERVL -29 599 25 2199 126 0 0 chr6 70023872 70024182 -112391060 - AluSx SINE Alu -2 310 1 1638 63 0 54 chr6 70024821 70025042 -112390200 - AluSc SINE Alu -26 283 75 321 309 65 0 chr6 70026920 70027059 -112388183 + MIR SINE MIR 84 231 -31 1584 205 10 3 chr6 70027105 70027408 -112387834 - AluJo SINE Alu -7 305 1 204 296 222 0 chr6 70027485 70027647 -112387595 - L2 LINE L2 0 3313 3116 815 144 23 8 chr6 70028449 70028581 -112386661 + AluSg/x SINE Alu 166 299 -13 1627 109 4 4 chr6 70028614 70028844 -112386398 - AluSq SINE Alu 0 313 84 672 118 0 0 chr6 70029056 70029149 -112386093 + AluJ/FLAM SINE Alu 1 93 -219 291 232 0 0 chr6 70029152 70029208 -112386034 - AluS SINE Alu -246 57 2 2195 112 0 16 chr6 70029219 70029524 -112385718 - AluSx SINE Alu -12 300 1 765 232 26 0 chr6 70029535 70029690 -112385552 - MER5C DNA MER1_type -164 160 2 1533 196 17 0 chr6 70030246 70030537 -112384705 - AluJo SINE Alu -16 296 1 1256 138 0 0 chr6 70030557 70030767 -112384475 - L1MA4 LINE L1 -11 6289 6080 583 224 6 26 chr6 70030777 70030933 -112384309 - MLT1G1 LTR MaLR 0 567 415 1005 226 33 26 chr6 70031031 70031337 -112383905 - MLT1G1 LTR MaLR -289 266 1 21 0 0 0 chr6 70031726 70031747 -112383495 + AT_rich Low_complexity Low_complexity 1 21 0 891 218 12 31 chr6 70032613 70032870 -112382372 - L1MD3 LINE L1 -15 7980 7729 259 250 33 0 chr6 70033058 70033118 -112382124 + MARNA DNA Mariner 152 213 -373 536 245 34 108 chr6 70033542 70034072 -112381170 - L1MC5 LINE L1 -72 7889 7399 1363 128 124 64 chr6 70034194 70034488 -112380754 + AluSx SINE Alu 1 310 0 1089 299 33 51 chr6 70034579 70035130 -112380112 + L2 LINE L2 2083 2623 -691 552 288 63 44 chr6 70035232 70035548 -112379694 + L1M4 LINE L1 3146 3467 -2679 856 200 22 5 chr6 70035548 70035733 -112379509 + L1M4 LINE L1 5420 5607 -571 2012 141 0 26 chr6 70035733 70036038 -112379204 + AluSx SINE Alu 1 297 -15 2149 112 7 7 chr6 70036353 70036656 -112378586 + AluSx SINE Alu 1 303 -9 317 289 88 11 chr6 70037031 70037173 -112378069 - MIR3 SINE MIR -66 142 3 639 236 79 6 chr6 70037337 70037515 -112377727 - MER46C DNA MER2_type -23 315 125 2163 106 27 0 chr6 70037515 70037808 -112377434 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 70039269 70039291 -112375951 + AT_rich Low_complexity Low_complexity 1 22 0 972 189 16 5 chr6 70040224 70040409 -112374833 - AluSx SINE Alu -125 187 1 324 64 0 0 chr6 70040704 70040751 -112374491 + (CA)n Simple_repeat Simple_repeat 1 47 0 914 217 32 23 chr6 70040798 70041015 -112374227 + AluJo SINE Alu 2 220 -92 1389 126 16 0 chr6 70041139 70041329 -112373913 + AluSq SINE Alu 95 287 -26 1970 120 13 20 chr6 70041448 70041747 -112373495 + AluSx SINE Alu 1 297 -15 1498 201 6 3 chr6 70043013 70043351 -112371891 - L1M4 LINE L1 -1145 5001 4663 227 289 120 0 chr6 70043609 70043751 -112371491 - L1M4 LINE L1 -1959 4187 4029 325 367 26 53 chr6 70043834 70044033 -112371209 - L2 LINE L2 -339 2975 2783 2258 120 0 0 chr6 70044033 70044334 -112370908 - AluSx SINE Alu -7 305 5 325 367 26 53 chr6 70044334 70044398 -112370844 - L2 LINE L2 -531 2783 2719 207 330 34 23 chr6 70044493 70044581 -112370661 + L2 LINE L2 2891 2979 -293 1913 107 7 11 chr6 70045221 70045493 -112369749 - AluSx SINE Alu -41 271 1 247 254 16 40 chr6 70046185 70046311 -112368931 + CT-rich Low_complexity Low_complexity 5 127 0 1420 40 0 96 chr6 70046474 70046673 -112368569 - AluSg SINE Alu -130 180 1 482 281 18 12 chr6 70046961 70047244 -112367998 - MLT1J1 LTR MaLR -117 329 1 661 276 96 47 chr6 70047275 70048221 -112367021 - L1M3 LINE L1 -630 5541 4549 648 217 76 10 chr6 70048312 70048510 -112366732 + L1MC2 LINE L1 6084 6294 -50 667 267 112 13 chr6 70048910 70049142 -112366100 + MIR SINE MIR 2 256 -6 711 315 56 0 chr6 70049646 70049878 -112365364 + MIR SINE MIR 5 249 -13 190 365 16 0 chr6 70049894 70049957 -112365285 + MIR SINE MIR 6 69 -193 309 171 117 90 chr6 70050030 70050141 -112365101 + MIR SINE MIR 94 207 -55 790 176 160 27 chr6 70050141 70050329 -112364913 - MER20 DNA MER1_type 0 219 7 337 317 124 30 chr6 70050501 70050703 -112364539 + L2 LINE L2 2904 3124 -189 411 21 0 0 chr6 70050855 70050903 -112364339 + (TG)n Simple_repeat Simple_repeat 2 49 0 1332 199 49 23 chr6 70051297 70051563 -112363679 - AluJb SINE Alu -39 273 1 2200 104 3 3 chr6 70051571 70051869 -112363373 - AluSp SINE Alu -15 298 1 1980 122 39 3 chr6 70051934 70052220 -112363022 + AluSq SINE Alu 5 300 -13 1644 117 0 4 chr6 70052523 70052754 -112362488 + AluSg/x SINE Alu 79 308 -2 6125 107 66 10 chr6 70052918 70053913 -112361329 - L1MA2 LINE L1 0 6304 5254 2081 102 0 0 chr6 70054020 70054295 -112360947 + AluSx SINE Alu 1 275 -37 455 185 26 106 chr6 70054305 70054456 -112360786 - MER46C DNA MER2_type -199 139 1 887 174 0 31 chr6 70055110 70055305 -112359937 - AluSq SINE Alu -124 189 1 262 299 11 11 chr6 70056627 70056714 -112358528 + MIR SINE MIR 170 256 -6 874 206 97 4 chr6 70056899 70057127 -112358115 - Charlie1 DNA MER1_type -171 2590 2342 312 143 0 0 chr6 70059369 70059425 -112355817 + (A)n Simple_repeat Simple_repeat 1 56 0 195 313 82 75 chr6 70059641 70059775 -112355467 - L2 LINE L2 0 3313 3179 447 137 0 0 chr6 70060356 70060429 -112354813 + (CA)n Simple_repeat Simple_repeat 2 74 0 21 57 0 0 chr6 70061787 70061822 -112353420 + AT_rich Low_complexity Low_complexity 1 35 0 309 250 11 33 chr6 70061822 70061914 -112353328 - L1MC4 LINE L1 -1339 6703 6614 662 162 37 120 chr6 70062299 70062364 -112352878 + MIR SINE MIR 67 136 -126 2445 71 7 0 chr6 70062364 70062673 -112352569 - AluSp SINE Alu 0 313 3 662 162 37 120 chr6 70062673 70062798 -112352444 + MIR SINE MIR 136 241 -21 1082 291 90 28 chr6 70064380 70065027 -112350215 - HAL1 LINE L1 -721 1786 1100 2080 88 64 0 chr6 70065027 70065310 -112349932 - AluSg SINE Alu -9 301 1 226 191 15 15 chr6 70065400 70065468 -112349774 + GA-rich Low_complexity Low_complexity 1 68 0 278 303 51 56 chr6 70065582 70065760 -112349482 - L2 LINE L2 -836 2478 2302 303 194 45 0 chr6 70066124 70066191 -112349051 - L1MCa LINE L1 -4362 2064 1995 * 335 289 0 0 chr6 70066175 70066265 -112348977 - L1MC4 LINE L1 -1339 6703 6614 317 337 0 0 chr6 70066203 70066292 -112348950 + L1MC4 LINE L1 6614 6702 -1340 * 845 136 66 3 chr6 70066802 70067061 -112348181 - MLT1B LTR MaLR -49 341 1 669 255 88 46 chr6 70067061 70067277 -112347965 - MIR SINE MIR -36 226 2 642 214 0 8 chr6 70067756 70067882 -112347360 - L2 LINE L2 0 3313 3189 817 230 7 0 chr6 70068138 70068290 -112346952 - FRAM SINE Alu -12 154 2 214 342 184 7 chr6 70068435 70068587 -112346655 + MIR SINE MIR 36 214 -48 23 0 0 0 chr6 70069590 70069613 -112345629 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr6 70069910 70069952 -112345290 + AT_rich Low_complexity Low_complexity 1 42 0 2530 43 0 0 chr6 70070266 70070565 -112344677 + AluY SINE Alu 1 299 -12 1419 137 14 28 chr6 70070818 70071102 -112344140 + AluSc SINE Alu 1 280 -19 22 35 0 0 chr6 70071242 70071271 -112343971 + AT_rich Low_complexity Low_complexity 1 29 0 2041 121 13 3 chr6 70072625 70072923 -112342319 - AluSx SINE Alu -11 301 1 288 368 86 0 chr6 70073123 70073240 -112342002 + L2 LINE L2 3146 3272 0 2042 105 36 39 chr6 70073412 70073718 -112341524 - AluSc SINE Alu -2 307 3 2388 97 0 7 chr6 70073729 70074038 -112341204 - AluSx SINE Alu -5 307 1 2602 128 22 27 chr6 70074646 70075093 -112340149 + MER65A LTR ERV1 1 445 0 2251 69 3 3 chr6 70075529 70075819 -112339423 - AluY SINE Alu -21 290 1 1343 102 19 0 chr6 70075819 70076025 -112339217 - L1P LINE L1 -781 5365 5156 1885 133 0 25 chr6 70076028 70076313 -112338929 + AluSx SINE Alu 25 302 -10 2987 148 55 66 chr6 70076506 70076783 -112338459 - L1MA9 LINE L1 0 6312 6033 2091 135 0 0 chr6 70076783 70077079 -112338163 - AluSq SINE Alu -17 296 1 2987 148 55 66 chr6 70077079 70077529 -112337713 - L1MA9 LINE L1 -279 6033 5593 346 197 13 0 chr6 70077532 70077608 -112337634 + L1MC4a LINE L1 6413 6489 -1319 192 179 0 0 chr6 70077609 70077648 -112337594 + T-rich Low_complexity Low_complexity 1 39 0 647 218 5 18 chr6 70077648 70077864 -112337378 + L1MC4a LINE L1 6478 6795 -1013 2150 107 37 3 chr6 70077865 70078164 -112337078 - AluSx SINE Alu -3 309 1 192 167 0 0 chr6 70078450 70078480 -112336762 + L2 LINE L2 2940 2969 -303 21 71 0 0 chr6 70078659 70078701 -112336541 + AT_rich Low_complexity Low_complexity 1 42 0 27 49 0 0 chr6 70078728 70078769 -112336473 + AT_rich Low_complexity Low_complexity 1 41 0 325 299 77 85 chr6 70078793 70079229 -112336013 + L1M4c LINE L1 938 1540 -1203 1962 123 39 3 chr6 70079447 70079732 -112335510 - AluSp SINE Alu -18 295 1 951 222 12 31 chr6 70080729 70080986 -112334256 - L1MD3 LINE L1 -15 7980 7729 235 208 325 8 chr6 70081093 70081213 -112334029 - MARNA DNA Mariner -33 553 396 * 298 250 25 12 chr6 70081174 70081254 -112333988 + MARNA DNA Mariner 152 232 -354 208 245 0 20 chr6 70081395 70081444 -112333798 + L2 LINE L2 3265 3312 -1 266 325 16 24 chr6 70081627 70081753 -112333489 + MARNA DNA Mariner 373 497 -89 21 89 0 0 chr6 70082149 70082205 -112333037 + AT_rich Low_complexity Low_complexity 1 56 0 429 305 23 0 chr6 70082558 70082689 -112332553 - L1ME1 LINE L1 -74 6092 5959 1605 149 42 14 chr6 70082692 70082981 -112332261 - AluJb SINE Alu -14 298 2 200 330 163 15 chr6 70083063 70083266 -112331976 + MIR SINE MIR 22 254 -8 198 0 0 0 chr6 70084611 70084633 -112330609 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr6 70084640 70084661 -112330581 + AT_rich Low_complexity Low_complexity 1 21 0 252 86 0 0 chr6 70084668 70084703 -112330539 + (T)n Simple_repeat Simple_repeat 1 35 0 514 208 7 107 chr6 70084837 70084986 -112330256 + MER94 DNA DNA 1 134 0 986 174 117 50 chr6 70085128 70085427 -112329815 + MER33 DNA MER1_type 1 319 -5 21 82 0 0 chr6 70085753 70085802 -112329440 + AT_rich Low_complexity Low_complexity 1 49 0 357 24 0 0 chr6 70086884 70086926 -112328316 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 724 150 0 8 chr6 70086928 70087048 -112328194 - FLAM_C SINE Alu -24 119 1 5498 177 64 54 chr6 70088918 70089159 -112326083 - L1MA5 LINE L1 -12 6288 6051 2179 124 0 0 chr6 70089159 70089466 -112325776 - AluSx SINE Alu -5 307 1 5498 177 64 54 chr6 70089466 70092087 -112323155 - L1MA5 LINE L1 -249 6051 3481 440 289 113 68 chr6 70092412 70092694 -112322548 + L3 LINE CR1 1230 1529 -48 1765 149 0 62 chr6 70092694 70092880 -112322362 - AluJb SINE Alu -9 303 144 2086 110 0 43 chr6 70092880 70093181 -112322061 - AluSp SINE Alu -25 288 1 1765 149 0 62 chr6 70093181 70093317 -112321925 - AluJb SINE Alu -168 144 1 440 289 113 68 chr6 70093317 70093345 -112321897 + L3 LINE CR1 1529 1554 -23 799 141 0 15 chr6 70093612 70093747 -112321495 - FLAM_C SINE Alu 0 133 1 731 285 71 15 chr6 70094555 70094881 -112320361 - HAL1 LINE L1 -882 1625 1282 2229 144 27 64 chr6 70095094 70095545 -112319697 - Tigger2a DNA MER2_type 0 434 1 458 281 133 91 chr6 70095553 70095951 -112319291 - HAL1 LINE L1 -1560 947 533 302 299 118 24 chr6 70096141 70096268 -112318974 - HAL1 LINE L1 -2363 144 6 2196 154 12 59 chr6 70096479 70096513 -112318729 - MLT2D LTR ERVL -9 405 371 441 0 0 0 chr6 70096513 70096562 -112318680 + (TG)n Simple_repeat Simple_repeat 2 50 0 2196 154 12 59 chr6 70096562 70096949 -112318293 - MLT2D LTR ERVL -43 371 4 645 90 139 0 chr6 70096949 70097071 -112318171 + L1MA8 LINE L1 6146 6284 -7 372 282 34 54 chr6 70097320 70097402 -112317840 - MIR SINE MIR -31 231 152 1196 129 71 22 chr6 70097402 70097627 -112317615 - MER46A DNA MER2_type 0 236 1 372 282 34 54 chr6 70097627 70097693 -112317549 - MIR SINE MIR -110 152 86 184 311 0 49 chr6 70098166 70098227 -112317015 - MIR3 SINE MIR -54 154 97 397 303 9 37 chr6 70098267 70098376 -112316866 - L2 LINE L2 -18 3254 3149 1375 214 50 57 chr6 70098487 70098907 -112316335 + LTR40c LTR ERVL 44 460 -5 23 33 0 0 chr6 70098979 70099009 -112316233 + AT_rich Low_complexity Low_complexity 1 30 0 2179 133 18 0 chr6 70099702 70100033 -112315209 + MER1B DNA MER1_type 1 337 0 1166 300 101 24 chr6 70101456 70101923 -112313319 - MLT1J LTR MaLR -1 510 8 227 256 60 30 chr6 70102257 70102425 -112312817 - Charlie7 DNA MER1_type -9 2603 2431 1297 219 123 94 chr6 70102483 70103281 -112311961 - Charlie7 DNA MER1_type -274 2338 1510 2079 128 3 10 chr6 70103281 70103593 -112311649 - AluSx SINE Alu -2 310 1 1297 219 123 94 chr6 70103593 70103679 -112311563 - Charlie7 DNA MER1_type -1102 1510 1428 322 281 188 12 chr6 70103681 70103841 -112311401 - Charlie7 DNA MER1_type -2311 301 114 23 33 0 0 chr6 70104206 70104236 -112311006 + AT_rich Low_complexity Low_complexity 1 30 0 1339 166 32 24 chr6 70104291 70104544 -112310698 + MER2 DNA MER2_type 2 256 -89 2025 113 0 0 chr6 70104560 70104834 -112310408 - AluSx SINE Alu -16 296 23 699 167 9 0 chr6 70104834 70104948 -112310294 - AluJo/FLAM SINE Alu -197 115 1 23 0 0 0 chr6 70105125 70105148 -112310094 + AT_rich Low_complexity Low_complexity 1 23 0 248 266 73 16 chr6 70105148 70105272 -112309970 - L1MC4 LINE L1 0 8042 7912 245 174 174 20 chr6 70105313 70105411 -112309831 - L1MC5 LINE L1 -237 7724 7612 535 267 160 22 chr6 70105591 70106016 -112309226 - L1MC5 LINE L1 -547 7495 7056 1738 134 24 31 chr6 70106152 70106444 -112308798 - AluJb SINE Alu -22 290 1 2191 79 0 58 chr6 70108060 70108389 -112306853 - AluY SINE Alu 0 311 2 384 259 28 70 chr6 70108509 70108652 -112306590 - L2 LINE L2 0 3313 3177 443 235 59 10 chr6 70109049 70109151 -112306091 - L2 LINE L2 -5 3308 3202 411 203 0 0 chr6 70109160 70109239 -112306003 + MADE1 DNA Mariner 1 79 -1 244 325 25 49 chr6 70109277 70109440 -112305802 - L2 LINE L2 -225 3088 2930 1677 108 0 4 chr6 70109546 70109799 -112305443 - AluSc SINE Alu 0 302 51 1101 103 0 0 chr6 70109799 70109945 -112305297 - AluSc SINE Alu -163 146 1 21 57 0 0 chr6 70110038 70110073 -112305169 + AT_rich Low_complexity Low_complexity 1 35 0 2760 114 16 7 chr6 70110458 70110888 -112304354 + MER57B LTR ERV1 1 434 0 206 204 0 19 chr6 70112086 70112140 -112303102 + (TA)n Simple_repeat Simple_repeat 1 53 0 2280 267 97 41 chr6 70113994 70115330 -112299912 - L2 LINE L2 0 3313 1914 282 230 52 89 chr6 70115458 70115671 -112299571 - L1ME4a LINE L1 0 6121 5917 2392 91 7 0 chr6 70115745 70116053 -112299189 + AluSx SINE Alu 1 310 -2 188 194 0 0 chr6 70116225 70116256 -112298986 + MIR SINE MIR 4 34 -228 226 331 108 39 chr6 70116592 70116722 -112298520 + L3b LINE CR1 1422 1560 -23 578 223 84 36 chr6 70116736 70116902 -112298340 - MIR SINE MIR -1 261 88 239 271 0 0 chr6 70117250 70117309 -112297933 + T-rich Low_complexity Low_complexity 1 59 0 4438 263 119 40 chr6 70118130 70120375 -112294867 - HAL1 LINE L1 -74 2433 12 30 27 0 0 chr6 70120788 70120825 -112294417 + AT_rich Low_complexity Low_complexity 1 37 0 356 216 41 21 chr6 70120945 70121042 -112294200 + MER94 DNA DNA 2 100 -34 21 57 0 0 chr6 70121520 70121555 -112293687 + AT_rich Low_complexity Low_complexity 1 35 0 1800 127 21 25 chr6 70124941 70125224 -112290018 + AluSx SINE Alu 1 282 -30 1760 56 0 9 chr6 70125789 70126005 -112289237 + AluY SINE Alu 83 296 -15 508 101 28 37 chr6 70126024 70126133 -112289109 + C-rich Low_complexity Low_complexity 3 110 0 1888 140 10 3 chr6 70126135 70126428 -112288814 - AluSx SINE Alu -17 295 1 492 255 191 11 chr6 70130466 70130654 -112284588 - L3 LINE CR1 -12 1565 1344 189 304 65 109 chr6 70130912 70131127 -112284115 - L3 LINE CR1 -910 667 461 2014 130 17 0 chr6 70131127 70131419 -112283823 + AluSx SINE Alu 1 297 -15 189 304 65 109 chr6 70131419 70131433 -112283809 - L3 LINE CR1 -1116 461 448 257 289 165 8 chr6 70131636 70131757 -112283485 - L2 LINE L2 -15 3298 3159 23 54 0 0 chr6 70132574 70132611 -112282631 + AT_rich Low_complexity Low_complexity 1 37 0 421 328 144 45 chr6 70132729 70133125 -112282117 - L2 LINE L2 -50 3263 2829 792 290 244 10 chr6 70133323 70133806 -112281436 - L2 LINE L2 -502 2812 2217 1141 157 35 5 chr6 70133825 70134023 -112281219 + MER46A DNA MER2_type 33 236 0 2675 251 120 49 chr6 70134023 70134111 -112281131 - L2 LINE L2 -1102 2212 2132 1851 162 3 3 chr6 70134111 70134413 -112280829 - AluJo SINE Alu -10 302 1 2675 251 120 49 chr6 70134413 70135632 -112279610 - L2 LINE L2 -1182 2132 812 21 36 0 0 chr6 70136649 70136677 -112278565 + AT_rich Low_complexity Low_complexity 1 28 0 2093 111 3 0 chr6 70137384 70137682 -112277560 - AluSg SINE Alu -11 299 1 1970 135 0 0 chr6 70138383 70138665 -112276577 - AluSc SINE Alu -17 292 11 421 242 138 5 chr6 70138944 70139203 -112276039 + MER46C DNA MER2_type 11 337 -1 250 320 87 10 chr6 70140068 70140171 -112275071 + L2 LINE L2 3156 3266 -6 28 0 0 0 chr6 70140259 70140287 -112274955 + AT_rich Low_complexity Low_complexity 1 28 0 2158 126 0 0 chr6 70140670 70140971 -112274271 - AluSx SINE Alu -11 301 1 22 0 0 0 chr6 70141808 70141830 -112273412 + AT_rich Low_complexity Low_complexity 1 22 0 5614 142 18 40 chr6 70141861 70142886 -112272356 - L1MD3 LINE L1 0 7995 5334 1969 131 33 39 chr6 70143118 70143455 -112271787 + MER1B DNA MER1_type 2 336 -1 1893 149 7 3 chr6 70145651 70145960 -112269282 - AluSx SINE Alu -2 310 1 24 91 0 0 chr6 70146285 70146351 -112268891 + AT_rich Low_complexity Low_complexity 1 66 0 709 158 14 48 chr6 70147510 70147656 -112267586 - MLT1J LTR MaLR -344 167 27 191 278 0 19 chr6 70147795 70147849 -112267393 + L2 LINE L2 3261 3313 0 297 242 32 74 chr6 70148630 70148725 -112266517 + MIR SINE MIR 40 130 -78 224 282 13 13 chr6 70151218 70151296 -112263946 + (CAGAGA)n Simple_repeat Simple_repeat 6 83 0 367 266 47 23 chr6 70153960 70154088 -112261154 - MIR SINE MIR -124 138 8 1920 173 58 70 chr6 70154303 70154805 -112260437 - MLT1D LTR MaLR -7 498 3 1149 200 164 0 chr6 70156108 70156468 -112258774 - Charlie1 DNA MER1_type 0 2761 2343 1012 240 145 15 chr6 70157553 70158016 -112257226 - HAL1 LINE L1 0 2507 1985 381 290 157 60 chr6 70159954 70160202 -112255040 + L2 LINE L2 2813 3084 -188 529 250 49 54 chr6 70160674 70160878 -112254364 + L2 LINE L2 3111 3313 0 1752 126 56 4 chr6 70161582 70161897 -112253345 - AluSx SINE Alu 0 329 1 30 45 0 0 chr6 70162193 70162237 -112253005 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr6 70162892 70162918 -112252324 + AT_rich Low_complexity Low_complexity 1 26 0 313 300 0 106 chr6 70165295 70165379 -112249863 - MER5A DNA MER1_type -26 163 104 1526 134 38 102 chr6 70165379 70165618 -112249624 + AluJo SINE Alu 1 217 -95 240 111 0 0 chr6 70165618 70165654 -112249588 + (TGGGGG)n Simple_repeat Simple_repeat 2 37 0 1526 134 38 102 chr6 70165654 70165728 -112249514 + AluJo SINE Alu 217 294 -18 313 300 0 106 chr6 70165728 70165813 -112249429 - MER5A DNA MER1_type -85 104 12 1816 172 61 15 chr6 70166195 70166607 -112248635 - L1MC1 LINE L1 0 6333 5903 2070 195 32 13 chr6 70166608 70167438 -112247804 - L1MC1 LINE L1 -672 5672 4834 227 351 0 0 chr6 70167440 70167517 -112247725 - L1MC/D LINE L1 -555 5804 5728 1167 341 89 28 chr6 70167556 70168271 -112246971 + L2 LINE L2 2095 2853 -461 409 248 50 10 chr6 70168265 70168366 -112246876 + MER91C DNA MER1_type 15 119 -21 * 2210 105 0 3 chr6 70168532 70168818 -112246424 + AluSc SINE Alu 3 287 -22 290 332 117 10 chr6 70168878 70169185 -112246057 - L1MC/D LINE L1 -2172 5636 5297 676 283 148 43 chr6 70170592 70170991 -112244251 - L2 LINE L2 -64 3249 2809 1597 232 87 42 chr6 70170996 70171067 -112244175 - LTR40a LTR ERVL -2 517 451 2112 133 3 6 chr6 70171067 70171398 -112243844 - L1PA16 LINE L1 0 6166 5837 1597 232 87 42 chr6 70171398 70171775 -112243467 - LTR40a LTR ERVL -68 451 43 1893 118 26 10 chr6 70171775 70172080 -112243162 + L1PA16 LINE L1 5853 6162 -4 1597 232 87 42 chr6 70172080 70172125 -112243117 - LTR40a LTR ERVL -476 43 1 1574 255 80 9 chr6 70172162 70172625 -112242617 - L2 LINE L2 -549 2765 2270 380 286 52 9 chr6 70172625 70172835 -112242407 + L1M4 LINE L1 2560 2778 -3368 1094 235 88 115 chr6 70173101 70173284 -112241958 - L1MD3 LINE L1 -5 8035 7848 207 0 0 0 chr6 70173284 70173307 -112241935 + (CA)n Simple_repeat Simple_repeat 1 23 0 1094 235 88 115 chr6 70173307 70173900 -112241342 - L1MD3 LINE L1 -192 7848 7303 * 13963 25 0 1 chr6 70173885 70175530 -112239712 - L1PA3 LINE L1 -1002 5144 3501 7597 28 0 1 chr6 70175530 70176539 -112238703 + L1PA3 LINE L1 5146 6153 -2 687 236 33 123 chr6 70176576 70176999 -112238243 - L1MC4 LINE L1 -720 7322 6938 893 256 148 64 chr6 70177001 70177407 -112237835 - LTR16A LTR ERVL 0 450 11 2065 109 0 21 chr6 70177503 70177787 -112237455 - AluSg SINE Alu -31 279 2 2151 96 87 29 chr6 70177940 70178284 -112236958 + THE1B LTR MaLR 1 364 0 1985 210 24 13 chr6 70180534 70180986 -112234256 - L1MD2 LINE L1 -469 5890 5434 2403 94 0 0 chr6 70182349 70182658 -112232584 - AluSx SINE Alu -3 309 1 450 291 63 58 chr6 70182691 70183069 -112232173 + L1MEd LINE L1 89 468 -5737 511 276 106 0 chr6 70183086 70183256 -112231986 + MLT1C LTR MaLR 189 376 -91 254 288 91 25 chr6 70183269 70183467 -112231775 + L1MEd LINE L1 1544 1754 -4642 1424 235 14 29 chr6 70183529 70183878 -112231364 + MLT1A2 LTR MaLR 4 347 -27 1271 98 5 0 chr6 70183878 70184062 -112231180 - L1P LINE L1 -2157 3989 3805 10049 116 2 16 chr6 70184164 70185769 -112229473 - L1P LINE L1 -2631 3515 1933 230 35 0 0 chr6 70185784 70185813 -112229429 - L1M2 LINE L1 -538 5762 5734 * 334 140 0 0 chr6 70185810 70185860 -112229382 + L1P LINE L1 4737 4786 -1360 * 351 82 0 0 chr6 70185859 70185908 -112229334 - L1P5 LINE L1 -392 5764 5716 * 6487 192 5 1 chr6 70185897 70187169 -112228073 - L1P LINE L1 -2303 3843 2567 2479 152 23 5 chr6 70187166 70187562 -112227680 - L1PA13 LINE L1 -6384 403 1 * 1223 277 40 109 chr6 70187571 70188517 -112226725 - L1M3d LINE L1 -4725 1166 9 2439 63 0 10 chr6 70190092 70190393 -112224849 - AluY SINE Alu -10 301 4 214 224 0 35 chr6 70190610 70190668 -112224574 + T-rich Low_complexity Low_complexity 4 59 0 327 177 0 0 chr6 70190717 70190779 -112224463 + (TA)n Simple_repeat Simple_repeat 2 63 0 942 144 66 121 chr6 70191106 70191362 -112223880 - THE1C LTR MaLR -133 242 1 12269 69 27 1 chr6 70191795 70194257 -112220985 - L1PA6 LINE L1 -1 6153 3622 4586 81 21 10 chr6 70194257 70195372 -112219870 + MER11A LTR ERVK 1 1266 0 1749 186 3 10 chr6 70195493 70195804 -112219438 - AluJo SINE Alu -3 309 1 309 265 31 0 chr6 70196861 70196954 -112218288 - MIR SINE MIR -41 167 67 204 97 0 0 chr6 70198220 70198251 -112216991 + (TATG)n Simple_repeat Simple_repeat 2 32 0 * 559 59 12 12 chr6 70198250 70198335 -112216907 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 240 296 185 7 chr6 70198734 70198869 -112216373 - L2 LINE L2 -217 3055 2897 368 196 20 59 chr6 70200952 70201033 -112214209 - MER53 DNA DNA 0 189 111 2621 90 11 16 chr6 70201033 70201410 -112213832 + THE1C LTR MaLR 1 375 0 368 196 20 59 chr6 70201410 70201430 -112213812 - MER53 DNA DNA -78 111 92 279 0 0 0 chr6 70201472 70201503 -112213739 + (TA)n Simple_repeat Simple_repeat 2 32 0 255 190 0 0 chr6 70201555 70201613 -112213629 + CT-rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr6 70202425 70202454 -112212788 + AT_rich Low_complexity Low_complexity 1 29 0 2959 94 10 0 chr6 70203107 70203523 -112211719 - L1MA2 LINE L1 -2 6302 5883 965 209 52 5 chr6 70203699 70203910 -112211332 - MER58A DNA MER1_type -1 223 3 304 415 0 0 chr6 70203916 70204034 -112211208 + L2 LINE L2 3150 3267 -5 437 227 149 7 chr6 70204198 70204339 -112210903 - MIR SINE MIR 0 262 102 7070 200 14 6 chr6 70204498 70206838 -112208404 + L1PA16 LINE L1 3803 6161 -5 387 248 45 57 chr6 70207695 70207852 -112207390 - MIR SINE MIR -1 261 107 978 280 39 0 chr6 70209467 70209749 -112205493 - L1MC4 LINE L1 -1048 6994 6702 906 121 0 0 chr6 70209769 70209893 -112205349 - AluSg/x SINE Alu -19 293 170 514 282 137 40 chr6 70210159 70210751 -112204491 - L1MC4a LINE L1 -1451 6357 5709 363 269 43 0 chr6 70210769 70210862 -112204380 - L1MC4a LINE L1 -2275 5533 5437 2135 104 3 3 chr6 70211771 70212059 -112203183 - AluSq SINE Alu -14 299 12 1236 133 18 0 chr6 70212124 70212342 -112202900 + L1MA8 LINE L1 6067 6288 -3 340 179 54 45 chr6 70212386 70212498 -112202744 + Charlie1 DNA MER1_type 2460 2572 -189 310 132 0 0 chr6 70213428 70213481 -112201761 - L1MB7 LINE L1 -10 6174 6122 210 358 26 58 chr6 70213973 70214163 -112201079 + MIR SINE MIR 29 212 -50 317 219 68 82 chr6 70215882 70216028 -112199214 - L1ME4a LINE L1 -17 6104 5961 385 304 39 0 chr6 70216172 70216353 -112198889 - L1ME4a LINE L1 -336 5785 5598 23 54 0 0 chr6 70216538 70216575 -112198667 + AT_rich Low_complexity Low_complexity 1 37 0 2368 82 13 0 chr6 70216778 70217083 -112198159 + AluY SINE Alu 1 309 -2 18511 57 0 0 chr6 70217350 70220491 -112194751 - L1PA5 LINE L1 0 6154 3013 285 169 56 90 chr6 70220798 70220887 -112194355 - MLT1J1 LTR MaLR -34 412 327 * 552 280 60 0 chr6 70220886 70221036 -112194206 - MLT1J2 LTR MaLR -220 230 72 217 313 31 42 chr6 70221061 70221157 -112194085 - L2 LINE L2 -27 3286 3192 2075 204 40 40 chr6 70221413 70221932 -112193310 + MLT2B1 LTR ERVL 2 520 0 2013 148 138 5 chr6 70222010 70222387 -112192855 - MSTA LTR MaLR -1 427 1 865 187 127 0 chr6 70222539 70222705 -112192537 - MER5A DNA MER1_type -2 187 1 251 261 0 14 chr6 70222933 70223002 -112192240 + CT-rich Low_complexity Low_complexity 1 68 0 970 157 0 0 chr6 70223328 70223481 -112191761 + AluJb SINE Alu 1 153 -159 735 182 135 0 chr6 70223677 70223825 -112191417 + AluSg/x SINE Alu 132 299 -11 2279 73 17 0 chr6 70224008 70224309 -112190933 + L1PA8 LINE L1 5865 6170 -2 453 302 54 34 chr6 70224342 70224491 -112190751 - MER5A DNA MER1_type -34 155 4 307 304 97 65 chr6 70225015 70225262 -112189980 + L2 LINE L2 3041 3295 -18 2144 78 11 0 chr6 70225281 70225550 -112189692 + AluSp SINE Alu 21 292 -21 202 297 128 45 chr6 70226097 70226363 -112188879 + L2 LINE L2 2621 2908 -406 215 360 126 46 chr6 70226389 70226628 -112188614 + L2 LINE L2 2992 3249 -23 325 214 24 48 chr6 70228007 70228091 -112187151 - MER5B DNA MER1_type -96 82 1 2370 71 0 40 chr6 70228885 70229207 -112186035 + AluY SINE Alu 1 309 -2 207 346 70 64 chr6 70229243 70229743 -112185499 - L2 LINE L2 -462 2852 2350 954 43 0 0 chr6 70230078 70230195 -112185047 + L1PA5 LINE L1 6030 6146 -8 191 337 48 24 chr6 70230227 70230310 -112184932 + MER5B DNA MER1_type 64 148 -30 4328 190 51 60 chr6 70230360 70231392 -112183850 + MER45B DNA AcHobo 17 1039 -1 267 269 60 0 chr6 70231559 70231626 -112183616 - MIR SINE MIR -181 81 11 367 203 73 57 chr6 70231706 70231829 -112183413 + MIR SINE MIR 126 250 -12 21 0 0 0 chr6 70234212 70234233 -112181009 + AT_rich Low_complexity Low_complexity 1 21 0 582 86 0 0 chr6 70236542 70236623 -112178619 + (TA)n Simple_repeat Simple_repeat 1 81 0 2235 96 10 0 chr6 70236624 70236915 -112178327 - AluSq SINE Alu -19 294 1 23 54 0 0 chr6 70236917 70236954 -112178288 + AT_rich Low_complexity Low_complexity 1 37 0 2177 102 0 16 chr6 70238119 70238422 -112176820 + AluSx SINE Alu 1 298 -14 343 253 61 10 chr6 70238953 70239052 -112176190 + L2 LINE L2 3209 3312 -1 1398 52 0 0 chr6 70239904 70240078 -112175164 + L1PA8 LINE L1 5998 6171 -1 25 31 0 0 chr6 70240115 70240147 -112175095 + AT_rich Low_complexity Low_complexity 1 32 0 354 125 56 0 chr6 70240284 70240356 -112174886 + L1MA5A LINE L1 6222 6297 0 401 338 26 52 chr6 70241310 70241579 -112173663 - L2 LINE L2 -19 3294 3033 621 307 65 17 chr6 70241595 70241612 -112173630 - MIR SINE MIR -14 248 233 2388 92 3 0 chr6 70241612 70241917 -112173325 - AluSp SINE Alu -7 306 1 621 307 65 17 chr6 70241917 70242130 -112173112 - MIR SINE MIR -29 233 7 713 336 39 6 chr6 70242141 70242471 -112172771 - L2 LINE L2 -350 2964 2624 219 324 99 45 chr6 70242767 70242878 -112172364 - MIR SINE MIR -66 142 26 2197 125 16 19 chr6 70243204 70243580 -112171662 + THE1C LTR MaLR 1 375 0 181 296 0 0 chr6 70245686 70245730 -112169512 - L2 LINE L2 -40 3232 3189 252 355 66 12 chr6 70245800 70245966 -112169276 - L2 LINE L2 -335 2978 2804 719 164 148 11 chr6 70246418 70246601 -112168641 + Charlie5 DNA MER1_type 2374 2581 -31 22 35 0 0 chr6 70247041 70247070 -112168172 + AT_rich Low_complexity Low_complexity 1 29 0 2132 83 0 62 chr6 70247561 70247885 -112167357 + AluY SINE Alu 1 304 -7 390 318 61 0 chr6 70248107 70248255 -112166987 + MIR SINE MIR 5 161 -101 2853 312 107 39 chr6 70248318 70250177 -112165065 + L2 LINE L2 1237 3229 -84 2038 150 0 3 chr6 70250575 70250881 -112164361 - AluJb SINE Alu -7 305 1 610 255 137 24 chr6 70252767 70252979 -112162263 - MIR SINE MIR -6 256 21 22 56 0 0 chr6 70253046 70253082 -112162160 + AT_rich Low_complexity Low_complexity 1 36 0 351 259 139 0 chr6 70254001 70254109 -112161133 - LTR67 LTR ERVL 0 557 435 457 165 35 0 chr6 70254716 70254801 -112160441 - Charlie4 DNA MER1_type -1745 216 129 406 313 87 59 chr6 70254821 70255179 -112160063 - LTR33A LTR ERVL -48 475 108 272 290 28 0 chr6 70255373 70255480 -112159762 - ERVL LTR ERVL -455 5309 5200 1333 257 34 14 chr6 70255591 70256034 -112159208 - Charlie4a DNA MER1_type -22 486 35 858 159 57 20 chr6 70256195 70256560 -112158682 + MER74C LTR ERVL 2 458 -2 561 198 158 23 chr6 70256615 70256792 -112158450 + L2 LINE L2 3113 3313 0 398 316 109 40 chr6 70257184 70257657 -112157585 - ERVL LTR ERVL -852 4633 4160 469 286 100 31 chr6 70257689 70258427 -112156815 - L1M2 LINE L1 -661 5509 4766 22 0 0 0 chr6 70258489 70258511 -112156731 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr6 70258700 70258731 -112156511 + AT_rich Low_complexity Low_complexity 1 31 0 2121 124 7 0 chr6 70259714 70260013 -112155229 - AluSx SINE Alu -11 301 1 256 309 65 20 chr6 70260311 70260512 -112154730 - L1M2 LINE L1 -1956 4190 3981 412 305 103 77 chr6 70260620 70261486 -112153756 - L1M4 LINE L1 -2240 3906 3019 11097 182 102 10 chr6 70262074 70265153 -112150089 + L1PBa LINE L1 100 3586 -3276 2813 26 0 0 chr6 70265153 70265466 -112149776 + AluYb8 SINE Alu 1 313 -5 11097 182 102 10 chr6 70265466 70266143 -112149099 + L1PBa LINE L1 3586 4200 -2662 3033 92 49 45 chr6 70266137 70266695 -112148547 + L1PB1 LINE L1 5211 5766 -385 * 40023 76 10 2 chr6 70266693 70272805 -112142437 + L1PA5 LINE L1 1 6154 0 291 101 0 43 chr6 70272850 70272919 -112142323 + (TA)n Simple_repeat Simple_repeat 1 66 0 1986 145 16 35 chr6 70272928 70272939 -112142303 + L1PB1 LINE L1 5782 5792 -359 186 43 0 0 chr6 70272939 70272962 -112142280 + (CA)n Simple_repeat Simple_repeat 2 24 0 1986 145 16 35 chr6 70272962 70273322 -112141920 + L1PB1 LINE L1 5792 6146 -5 1319 165 33 33 chr6 70273514 70273787 -112141455 - L1MB8 LINE L1 -384 5800 5528 464 178 67 0 chr6 70273774 70273864 -112141378 + L1MB8 LINE L1 5807 5902 -276 * 28 0 0 0 chr6 70274253 70274281 -112140961 + AT_rich Low_complexity Low_complexity 1 28 0 393 228 16 65 chr6 70275178 70275301 -112139941 - L1ME3A LINE L1 -2 6168 6052 484 281 131 27 chr6 70275312 70275686 -112139556 - L1M4 LINE L1 -2393 3753 3341 1858 220 86 34 chr6 70275735 70276317 -112138925 - L1MCb LINE L1 -4982 1063 452 344 311 232 0 chr6 70276317 70276507 -112138735 + L2 LINE L2 2008 2241 -1073 5714 143 24 35 chr6 70276518 70277121 -112138121 - L1MA5 LINE L1 -2 6298 5690 742 186 0 0 chr6 70277121 70277239 -112138003 - FLAM_C SINE Alu -15 118 1 5714 143 24 35 chr6 70277239 70277635 -112137607 - L1MA5 LINE L1 -610 5690 5291 2154 105 27 0 chr6 70277635 70277802 -112137440 - AluY SINE Alu -9 302 122 234 0 0 0 chr6 70277802 70277828 -112137414 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2154 105 27 0 chr6 70277828 70277954 -112137288 - AluY SINE Alu -189 122 1 5714 143 24 35 chr6 70277954 70278605 -112136637 - L1MA5 LINE L1 -1009 5291 4656 630 317 99 0 chr6 70278916 70279137 -112136105 + MIR SINE MIR 2 244 -18 7590 104 9 1 chr6 70279201 70281095 -112134147 - L1PA7 LINE L1 0 6154 4251 2362 115 11 3 chr6 70281096 70281444 -112133798 + L1PA7 LINE L1 3895 4245 -1901 6256 99 4 2 chr6 70281447 70282677 -112132565 - L1PA10 LINE L1 -11 6157 4927 344 278 44 22 chr6 70282790 70282880 -112132362 - MIR3 SINE MIR -42 166 75 28 0 0 0 chr6 70284432 70284460 -112130782 + AT_rich Low_complexity Low_complexity 1 28 0 33 25 0 0 chr6 70284499 70284539 -112130703 + AT_rich Low_complexity Low_complexity 1 40 0 321 258 31 10 chr6 70284960 70285057 -112130185 + CT-rich Low_complexity Low_complexity 1 99 0 22 0 0 0 chr6 70285600 70285622 -112129620 + AT_rich Low_complexity Low_complexity 1 22 0 27428 132 11 69 chr6 70285981 70289466 -112125776 + L1P LINE L1 12 3088 -3058 2805 19 0 0 chr6 70289466 70289774 -112125468 + AluYa5 SINE Alu 1 308 -3 27428 132 11 69 chr6 70289774 70291542 -112123700 + L1P LINE L1 3088 4958 -1188 5344 59 3 0 chr6 70291542 70292213 -112123029 + L1PA8 LINE L1 5486 6161 -11 25 31 0 0 chr6 70292267 70292299 -112122943 + AT_rich Low_complexity Low_complexity 1 32 0 275 235 12 37 chr6 70292678 70292759 -112122483 + MER103 DNA DNA 60 138 -28 598 315 28 0 chr6 70292781 70292959 -112122283 + MIR SINE MIR 51 233 -29 296 337 22 22 chr6 70293178 70293270 -112121972 - L2 LINE L2 -27 3245 3154 895 290 40 60 chr6 70294564 70294967 -112120275 - MLT1J LTR MaLR -12 499 105 703 113 0 0 chr6 70295853 70295950 -112119292 - AluS SINE Alu -215 97 1 324 0 0 0 chr6 70296666 70296702 -112118540 + (T)n Simple_repeat Simple_repeat 1 36 0 818 243 81 19 chr6 70296803 70297013 -112118229 - MIR SINE MIR -21 241 19 23 0 0 0 chr6 70297681 70297704 -112117538 + AT_rich Low_complexity Low_complexity 1 23 0 524 336 59 38 chr6 70297998 70298337 -112116905 + LTR16C LTR ERVL 146 491 0 1031 333 94 40 chr6 70298521 70299192 -112116050 + L2 LINE L2 2149 2899 -414 1898 196 22 0 chr6 70299192 70299549 -112115693 + MLT1A1 LTR MaLR 1 365 0 1031 333 94 40 chr6 70299549 70299904 -112115338 + L2 LINE L2 2899 3233 -80 22 0 0 0 chr6 70300006 70300028 -112115214 + AT_rich Low_complexity Low_complexity 1 22 0 2349 103 0 0 chr6 70301229 70301564 -112113678 - AluSg SINE Alu 0 335 1 624 259 138 69 chr6 70302574 70303041 -112112201 + MLT1K LTR MaLR 11 577 -11 21 36 0 0 chr6 70304863 70304891 -112110351 + AT_rich Low_complexity Low_complexity 1 28 0 255 309 17 94 chr6 70305298 70305479 -112109763 + MER5A DNA MER1_type 1 167 -22 206 178 44 0 chr6 70306929 70306974 -112108268 + CT-rich Low_complexity Low_complexity 2 48 0 197 283 0 0 chr6 70307244 70307290 -112107952 + L2 LINE L2 3211 3256 -16 631 197 35 64 chr6 70308949 70308970 -112106272 + LTR41 LTR ERVL 5 25 -770 2251 125 0 3 chr6 70308970 70309274 -112105968 + AluSx SINE Alu 2 304 -8 631 197 35 64 chr6 70309274 70309461 -112105781 + LTR41 LTR ERVL 25 231 -564 390 186 0 0 chr6 70309902 70309988 -112105254 + (TG)n Simple_repeat Simple_repeat 2 87 0 426 193 35 107 chr6 70310000 70310068 -112105174 + LTR41 LTR ERVL 590 661 -112 2146 123 3 3 chr6 70310068 70310368 -112104874 - AluSx SINE Alu -12 300 1 426 193 35 107 chr6 70310368 70310496 -112104746 + LTR41 LTR ERVL 661 772 -1 37500 76 14 3 chr6 70310594 70316690 -112098552 - L1PA5 LINE L1 0 6154 1 180 373 50 6 chr6 70316717 70316878 -112098364 - L2 LINE L2 -852 2462 2295 265 229 16 0 chr6 70317430 70317491 -112097751 + MER94 DNA DNA 72 133 -1 2646 83 98 10 chr6 70317671 70318046 -112097196 + MLT2A1 LTR ERVL 2 342 -102 276 30 0 0 chr6 70318046 70318079 -112097163 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 * 387 0 0 0 chr6 70318078 70318121 -112097121 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 2646 83 98 10 chr6 70318079 70318152 -112097090 + MLT2A1 LTR ERVL 342 444 0 534 349 82 65 chr6 70320078 70320539 -112094703 - L2 LINE L2 0 3272 2804 204 244 114 23 chr6 70320776 70320907 -112094335 + L2 LINE L2 2782 2924 -390 518 308 80 60 chr6 70321363 70321749 -112093493 + L2 LINE L2 2919 3312 -1 563 231 77 22 chr6 70321983 70322165 -112093077 + L1ME3 LINE L1 5971 6162 0 198 203 51 51 chr6 70323082 70323141 -112092101 - L2 LINE L2 0 3272 3214 205 238 200 67 chr6 70323194 70323299 -112091943 + MER5A DNA MER1_type 2 120 -69 28180 123 17 52 chr6 70324952 70331317 -112083925 + L1PA7 LINE L1 9 6146 -8 1493 214 43 50 chr6 70331765 70332160 -112083082 + MLT1C LTR MaLR 8 401 -66 2215 98 0 19 chr6 70332160 70332477 -112082765 - AluY SINE Alu 0 311 1 1493 214 43 50 chr6 70332477 70332544 -112082698 + MLT1C LTR MaLR 401 467 0 245 331 201 0 chr6 70332930 70333069 -112082173 - MIR3 SINE MIR -1 207 41 255 31 0 0 chr6 70333492 70333524 -112081718 + (T)n Simple_repeat Simple_repeat 1 32 0 3129 161 51 3 chr6 70333979 70334583 -112080659 - L1MC1 LINE L1 0 6333 5701 1327 213 109 25 chr6 70334834 70335295 -112079947 + MLT1D LTR MaLR 1 593 0 2148 122 0 13 chr6 70335797 70336108 -112079134 + AluSg SINE Alu 1 307 -3 475 346 109 36 chr6 70337158 70337461 -112077781 + L2 LINE L2 2948 3272 0 333 287 43 113 chr6 70338056 70338356 -112076886 + L1M4 LINE L1 379 657 -5667 1253 288 74 19 chr6 70338406 70339300 -112075942 + L1M4 LINE L1 657 1614 -4814 765 152 234 35 chr6 70339309 70339473 -112075769 - MER46A DNA MER2_type -2495 236 25 1937 167 0 10 chr6 70339473 70339784 -112075458 - AluSx SINE Alu -4 308 1 765 152 234 35 chr6 70339784 70339816 -112075426 - MER46A DNA MER2_type -2706 25 1 554 256 100 47 chr6 70339816 70340403 -112074839 + L1M4 LINE L1 1686 2394 -4213 851 287 248 2 chr6 70340435 70340839 -112074403 - L2 LINE L2 -1826 1488 986 328 271 208 27 chr6 70341147 70341368 -112073874 + L2 LINE L2 3046 3306 -7 377 289 48 24 chr6 70342255 70342421 -112072821 + MER69A DNA AcHobo 2 171 -6 1839 132 22 65 chr6 70342476 70342846 -112072396 - L1MB5 LINE L1 -10 6164 5811 2588 55 0 3 chr6 70342910 70343220 -112072022 - AluY SINE Alu -2 309 1 333 266 19 51 chr6 70344400 70344558 -112070684 + MER106B DNA MER1_type 907 1059 0 2223 138 39 73 chr6 70345218 70345578 -112069664 - L1PB4 LINE L1 0 6156 5785 189 0 0 0 chr6 70345578 70345599 -112069643 + (CA)n Simple_repeat Simple_repeat 2 22 0 180 0 0 0 chr6 70345603 70345623 -112069619 + (TA)n Simple_repeat Simple_repeat 1 20 0 261 0 0 0 chr6 70345627 70345656 -112069586 + (TG)n Simple_repeat Simple_repeat 2 30 0 2223 138 39 73 chr6 70345656 70345779 -112069463 - L1PB4 LINE L1 -377 5779 5680 1269 123 34 0 chr6 70345772 70346008 -112069234 + L1P5 LINE L1 5358 5601 -555 * 2239 120 0 0 chr6 70346032 70346341 -112068901 - AluSx SINE Alu -3 309 1 560 262 33 61 chr6 70347077 70347291 -112067951 - MER63A DNA MER1_type -1 209 2 736 254 12 6 chr6 70347295 70347464 -112067778 - MER5B DNA MER1_type -5 173 4 255 341 29 39 chr6 70347477 70347682 -112067560 - L2 LINE L2 -1042 2272 2070 263 314 234 0 chr6 70347784 70347908 -112067334 + L3 LINE CR1 1374 1526 -51 201 125 25 25 chr6 70349100 70349140 -112066102 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 202 305 188 31 chr6 70349448 70349576 -112065666 - L2 LINE L2 -8 3305 3158 25 0 0 0 chr6 70349606 70349631 -112065611 + AT_rich Low_complexity Low_complexity 1 25 0 1250 173 64 29 chr6 70349889 70350167 -112065075 - MER33 DNA MER1_type -2261 324 32 2255 118 85 15 chr6 70350167 70350567 -112064675 + MSTA LTR MaLR 1 428 0 1250 173 64 29 chr6 70350567 70350601 -112064641 - MER33 DNA MER1_type -2553 32 1 1821 200 57 7 chr6 70350918 70351377 -112063865 - L1MB7 LINE L1 -9 6175 5694 13128 123 31 8 chr6 70351383 70352017 -112063225 + Tigger1 DNA MER2_type 1 619 -1799 2172 115 3 22 chr6 70352017 70352330 -112062912 + AluSx SINE Alu 1 307 -5 13128 123 31 8 chr6 70352330 70353853 -112061389 + Tigger1 DNA MER2_type 619 2209 -209 1414 157 39 34 chr6 70353890 70354347 -112060895 - L1MB7 LINE L1 -597 5581 5118 207 0 0 0 chr6 70356903 70356926 -112058316 + (T)n Simple_repeat Simple_repeat 1 23 0 332 337 74 0 chr6 70357842 70358005 -112057237 + LTR33 LTR ERVL 55 229 -292 244 308 89 27 chr6 70358037 70358261 -112056981 + LTR33 LTR ERVL 279 516 -5 2378 80 3 13 chr6 70358471 70358785 -112056457 - AluY SINE Alu 0 311 1 182 211 40 164 chr6 70359126 70359278 -112055964 + MIR SINE MIR 51 183 -79 226 356 0 11 chr6 70359337 70359424 -112055818 + MIR3 SINE MIR 108 193 -15 952 216 55 41 chr6 70359528 70359820 -112055422 + MLT1B LTR MaLR 95 390 0 2215 117 0 0 chr6 70359872 70360162 -112055080 + AluSx SINE Alu 2 291 -21 578 302 11 22 chr6 70360455 70360634 -112054608 + MIR3 SINE MIR 21 197 -11 31 26 0 0 chr6 70361132 70361170 -112054072 + AT_rich Low_complexity Low_complexity 1 38 0 1979 101 17 0 chr6 70361171 70361459 -112053783 - L1PA16 LINE L1 -9 6157 5865 351 287 37 37 chr6 70362192 70362328 -112052914 + MIR3 SINE MIR 70 205 -3 1559 66 78 53 chr6 70363127 70363231 -112052011 - L1PA8 LINE L1 -13 6159 6059 2299 96 0 3 chr6 70363231 70363534 -112051708 - AluY SINE Alu -9 302 1 1559 66 78 53 chr6 70363534 70363673 -112051569 - L1PA8 LINE L1 -113 6059 5910 474 226 79 51 chr6 70364653 70364830 -112050412 + MIR SINE MIR 22 203 -59 277 257 54 0 chr6 70365627 70365701 -112049541 + MIR SINE MIR 79 156 -106 479 283 0 8 chr6 70365941 70366061 -112049181 + L2 LINE L2 3189 3307 -6 285 29 0 0 chr6 70366115 70366149 -112049093 + (TG)n Simple_repeat Simple_repeat 1 34 0 882 154 6 0 chr6 70367697 70367859 -112047383 + L1MA7 LINE L1 6125 6287 -4 233 156 0 0 chr6 70367900 70367945 -112047297 - HAL1b LINE L1 -559 789 745 3139 151 3 86 chr6 70369225 70369925 -112045317 - L1MA5 LINE L1 -5 6295 5654 4357 161 43 40 chr6 70370247 70370808 -112044434 - MER21B LTR ERV1 -1 862 295 1928 107 90 14 chr6 70370808 70371097 -112044145 - AluSx SINE Alu -1 311 1 4357 161 43 40 chr6 70371097 70371394 -112043848 - MER21B LTR ERV1 -568 295 1 7447 32 6 0 chr6 70371508 70372445 -112042797 + L1PA4 LINE L1 5214 6155 0 422 310 16 0 chr6 70372699 70372828 -112042414 + L2 LINE L2 3183 3313 0 842 163 28 36 chr6 70372893 70373299 -112041943 + MLT1B LTR MaLR 1 367 -23 509 252 86 7 chr6 70373300 70373451 -112041791 - MIR SINE MIR -23 239 77 213 296 0 0 chr6 70374134 70374188 -112041054 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 501 17 0 0 chr6 70374873 70374931 -112040311 + (T)n Simple_repeat Simple_repeat 1 58 0 2317 54 0 4 chr6 70375075 70375355 -112039887 - AluY SINE Alu -32 279 1 321 109 73 0 chr6 70375530 70375585 -112039657 + MLT1A1 LTR MaLR 307 365 0 6272 131 68 7 chr6 70377246 70378352 -112036890 + Tigger2 DNA MER2_type 6 1178 -1540 6893 54 0 0 chr6 70378360 70379251 -112035991 - L1PA5 LINE L1 -1 6153 5263 4352 138 13 61 chr6 70379251 70380107 -112035135 + Tigger2 DNA MER2_type 1155 1969 -749 1245 94 50 10 chr6 70380209 70380410 -112034832 + L1PA15 LINE L1 5955 6163 -2 487 284 82 67 chr6 70380495 70380821 -112034421 + L1MEd LINE L1 815 1149 -4970 2668 107 5 5 chr6 70380821 70381196 -112034046 - THE1C LTR MaLR 0 375 1 487 284 82 67 chr6 70381196 70381260 -112033982 + L1MEd LINE L1 1149 1211 -4908 3499 93 53 11 chr6 70381272 70381839 -112033403 - L1MA3 LINE L1 0 6305 5715 775 158 0 0 chr6 70382031 70382151 -112033091 + FLAM_C SINE Alu 1 120 -23 3720 178 39 41 chr6 70382182 70383010 -112032232 - LTR1B LTR ERV1 0 826 1 24 0 0 0 chr6 70383071 70383095 -112032147 + AT_rich Low_complexity Low_complexity 1 24 0 377 296 42 21 chr6 70383611 70383753 -112031489 - MIR SINE MIR -48 214 70 322 122 0 10 chr6 70383955 70384029 -112031213 - Alu SINE Alu -252 48 1 340 216 0 136 chr6 70384309 70384370 -112030872 - MER81 DNA DNA 0 114 77 2402 50 12 41 chr6 70384370 70384689 -112030553 + AluY SINE Alu 2 311 0 340 216 0 136 chr6 70384689 70384752 -112030490 - MER81 DNA DNA -37 77 7 15249 209 29 24 chr6 70385488 70386309 -112028933 + L1P4 LINE L1 1164 1980 -4836 2325 84 0 3 chr6 70386309 70386607 -112028635 + AluY SINE Alu 1 297 -14 15249 209 29 24 chr6 70386607 70391091 -112024151 + L1P4 LINE L1 1980 6468 -348 1906 142 64 0 chr6 70391191 70391535 -112023707 + Tigger2 DNA MER2_type 2353 2718 0 391 240 99 8 chr6 70392431 70392552 -112022690 + MLT1K LTR MaLR 457 588 0 733 135 98 0 chr6 70392824 70392987 -112022255 - L1MA8 LINE L1 -10 6281 6103 2045 133 9 28 chr6 70393009 70393326 -112021916 + AluSx SINE Alu 1 311 -1 2303 110 41 14 chr6 70393452 70393817 -112021425 - THE1C LTR MaLR 0 375 1 353 292 110 7 chr6 70394404 70394558 -112020684 - MIR3 SINE MIR -14 194 25 879 92 23 0 chr6 70395216 70395347 -112019895 + L1MA3 LINE L1 6172 6305 0 465 306 50 22 chr6 70395532 70395712 -112019530 + MIR SINE MIR 4 188 -74 32 57 0 0 chr6 70395735 70395788 -112019454 + AT_rich Low_complexity Low_complexity 1 53 0 222 171 0 0 chr6 70396959 70397000 -112018242 + CT-rich Low_complexity Low_complexity 4 44 0 201 186 35 47 chr6 70397196 70397282 -112017960 + (TA)n Simple_repeat Simple_repeat 2 86 0 304 338 133 33 chr6 70397629 70397869 -112017373 + L2 LINE L2 2818 3081 -191 189 107 0 0 chr6 70397907 70397935 -112017307 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 226 300 86 0 chr6 70397962 70398032 -112017210 + L2 LINE L2 3104 3179 -93 414 279 52 0 chr6 70398035 70398171 -112017071 + MER82 DNA MER2_type 1 143 -510 2229 82 0 3 chr6 70398254 70398584 -112016658 + AluSg1 SINE Alu 1 329 0 2079 84 67 6 chr6 70398589 70398956 -112016286 + LTR7 LTR ERV1 1 450 0 18566 141 11 18 chr6 70398956 70402656 -112012586 + HERVH LTR ERV1 1 3993 -3720 5435 148 8 4 chr6 70402639 70403584 -112011658 + HERVH LTR ERV1 3993 5288 -1803 * 2056 168 10 0 chr6 70403583 70403970 -112011272 + HERVH LTR ERV1 5626 6016 -1697 * 3494 97 12 14 chr6 70403963 70404521 -112010721 + HERVH LTR ERV1 7157 7713 0 1943 103 76 6 chr6 70404521 70404885 -112010357 + LTR7 LTR ERV1 1 450 0 466 132 61 70 chr6 70404955 70405069 -112010173 - L1MA7 LINE L1 0 6291 6179 2055 205 28 35 chr6 70405417 70405875 -112009367 + MER82 DNA MER2_type 199 653 0 324 294 50 69 chr6 70406512 70406774 -112008468 - L2 LINE L2 0 3313 3057 339 107 0 36 chr6 70406775 70406831 -112008411 + MSTC LTR MaLR 1 54 -374 8742 139 56 13 chr6 70406831 70407416 -112007826 + Tigger1 DNA MER2_type 856 1415 -1003 6466 94 11 0 chr6 70407416 70408401 -112006841 + L1PA8 LINE L1 5178 6172 0 8742 139 56 13 chr6 70408401 70409314 -112005928 + Tigger1 DNA MER2_type 1415 2418 0 1381 207 108 24 chr6 70409401 70409556 -112005686 - MLT1A1 LTR MaLR -2 363 222 2110 108 55 102 chr6 70409556 70410028 -112005214 + LTR7 LTR ERV1 1 450 0 1381 207 108 24 chr6 70410028 70410205 -112005037 - MLT1A1 LTR MaLR -143 222 3 7179 42 1 15 chr6 70410308 70411647 -112003595 + L1PA4 LINE L1 4828 6153 -2 288 256 68 116 chr6 70414262 70414469 -112000773 + MIR SINE MIR 20 216 -46 2413 139 10 5 chr6 70414477 70414880 -112000362 + L1PB1 LINE L1 5745 6149 -2 689 268 104 14 chr6 70414966 70415186 -112000056 + MIR SINE MIR 23 262 0 2429 195 71 10 chr6 70415230 70415748 -111999494 - MER44D DNA MER2_type 0 605 1 201 286 0 0 chr6 70416278 70416327 -111998915 - MIR SINE MIR -94 114 66 188 291 159 13 chr6 70417447 70417598 -111997644 + L2 LINE L2 3115 3287 -26 721 263 121 36 chr6 70418104 70418328 -111996914 - MER45C DNA AcHobo 0 953 711 * 844 311 32 14 chr6 70418318 70418688 -111996554 - MER45C DNA AcHobo -542 411 1 2181 108 0 0 chr6 70418716 70419012 -111996230 + AluY SINE Alu 1 296 -15 743 165 143 97 chr6 70419212 70419491 -111995751 - LTR37B LTR ERV1 -4 464 173 227 326 61 14 chr6 70420238 70420385 -111994857 + L3b LINE CR1 1335 1488 -95 236 304 14 14 chr6 70420694 70420763 -111994479 - MIR3 SINE MIR -49 159 91 4157 50 5 32 chr6 70420904 70421460 -111993782 - L1PA7 LINE L1 -1 6153 5613 429 82 0 0 chr6 70421561 70421622 -111993620 - L1PA7 LINE L1 -742 5412 5352 309 42 0 21 chr6 70421625 70421673 -111993569 + L1P LINE L1 5261 5307 -847 568 269 21 0 chr6 70423952 70424092 -111991150 + LTR37B LTR ERV1 7 149 -319 3070 174 46 29 chr6 70424092 70424679 -111990563 - MER7C DNA MER2_type 0 602 6 937 221 35 74 chr6 70424684 70425023 -111990219 + LTR37B LTR ERV1 143 468 0 547 218 20 20 chr6 70425067 70425214 -111990028 - MER69 DNA AcHobo -1 2525 2379 285 128 0 0 chr6 70425285 70425324 -111989918 - LTR8 LTR ERV1 -106 585 547 1163 125 4 88 chr6 70425435 70425675 -111989567 - L1MA4 LINE L1 -19 6281 6062 878 209 85 24 chr6 70427383 70427594 -111987648 + MER58A DNA MER1_type 1 224 0 1834 245 50 55 chr6 70430465 70431061 -111984181 - MLT1E LTR MaLR 0 593 1 213 186 17 17 chr6 70432248 70432307 -111982935 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1812 181 32 97 chr6 70433234 70433730 -111981512 + MLT1C LTR MaLR 1 464 -3 6512 82 6 6 chr6 70433969 70435205 -111980037 + L1PA14 LINE L1 4918 6158 -3 22 0 0 0 chr6 70437810 70437832 -111977410 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 70438421 70438442 -111976800 + AT_rich Low_complexity Low_complexity 1 21 0 921 350 53 30 chr6 70438465 70439080 -111976162 + L1M3d LINE L1 9 672 -5219 238 347 23 62 chr6 70439147 70439339 -111975903 + L1M3d LINE L1 665 1110 -5193 2097 263 153 34 chr6 70439481 70440572 -111974670 + L1MB1 LINE L1 800 2014 -4370 423 66 26 66 chr6 70440572 70440648 -111974594 - L1PA16 LINE L1 0 6166 6094 2097 263 153 34 chr6 70440648 70440993 -111974249 + L1MB1 LINE L1 2014 2317 -4067 343 227 0 0 chr6 70440995 70441070 -111974172 + L1MB1 LINE L1 2464 2538 -3844 2131 212 89 14 chr6 70441246 70441897 -111973345 + L1MB1 LINE L1 4487 5186 -1196 4055 148 26 79 chr6 70442636 70443516 -111971726 + L1MB1 LINE L1 5180 6003 -401 1947 157 24 29 chr6 70443516 70443898 -111971344 + L1MA7 LINE L1 5909 6288 -3 4055 148 26 79 chr6 70443898 70444215 -111971027 + L1MB1 LINE L1 6003 6335 -69 296 80 0 0 chr6 70444305 70444355 -111970887 + L1PA8 LINE L1 6122 6171 -1 903 188 84 24 chr6 70444413 70444626 -111970616 + MIR SINE MIR 10 235 -27 280 278 105 23 chr6 70446000 70446133 -111969109 + MIR SINE MIR 119 262 0 273 274 57 0 chr6 70447794 70447900 -111967342 + L1ME4a LINE L1 5994 6105 -16 385 200 0 150 chr6 70447913 70447976 -111967266 + MER81 DNA DNA 7 45 -69 1511 167 13 41 chr6 70447976 70448294 -111966948 - AluY SINE Alu 0 311 3 385 200 0 150 chr6 70448294 70448350 -111966892 + MER81 DNA DNA 45 108 -6 258 363 56 52 chr6 70548407 70548885 -111866357 + L2 LINE L2 2693 3250 -22 24 67 0 0 chr6 70549068 70549113 -111866129 + AT_rich Low_complexity Low_complexity 1 45 0 494 304 159 40 chr6 70550275 70550729 -111864513 + LTR33 LTR ERVL 14 521 0 188 366 89 11 chr6 70550909 70551100 -111864142 - L2 LINE L2 -1255 2059 1854 21 82 0 0 chr6 70551325 70551374 -111863868 + AT_rich Low_complexity Low_complexity 1 49 0 206 244 0 0 chr6 70551606 70551651 -111863591 + (TATG)n Simple_repeat Simple_repeat 2 46 0 274 373 81 42 chr6 70553335 70553571 -111861671 + L2 LINE L2 3027 3271 -1 360 0 0 0 chr6 70553687 70553727 -111861515 + (ATG)n Simple_repeat Simple_repeat 1 40 0 1905 177 103 47 chr6 70555195 70555562 -111859680 + MER67D LTR ERV1 2 404 -110 273 57 0 0 chr6 70555562 70555597 -111859645 + (CA)n Simple_repeat Simple_repeat 2 36 0 1905 177 103 47 chr6 70555597 70555715 -111859527 + MER67D LTR ERV1 404 514 0 745 282 99 45 chr6 70555836 70556319 -111858923 + MLT1J LTR MaLR 1 509 -2 325 276 131 25 chr6 70556449 70556724 -111858518 - L1M4 LINE L1 -1533 4613 4310 29 0 0 0 chr6 70556733 70556762 -111858480 + AT_rich Low_complexity Low_complexity 1 29 0 1527 166 29 16 chr6 70556806 70557114 -111858128 - L1MA3 LINE L1 0 6305 5994 705 194 7 0 chr6 70557117 70557261 -111857981 + L1 LINE L1 5053 5197 -949 1146 217 20 0 chr6 70557726 70557975 -111857267 - AluJb SINE Alu -58 254 1 29 104 0 0 chr6 70558226 70558332 -111856910 + AT_rich Low_complexity Low_complexity 1 106 0 180 291 36 0 chr6 70558811 70558857 -111856385 - L2 LINE L2 -1879 1435 1388 601 329 43 20 chr6 70558857 70559112 -111856130 + MIR SINE MIR 1 261 -1 1277 271 105 26 chr6 70560123 70560548 -111854694 - MLT1H LTR MaLR -2 547 74 1798 158 27 0 chr6 70560548 70560840 -111854402 + AluSx SINE Alu 1 300 -12 1277 271 105 26 chr6 70560840 70560919 -111854323 - MLT1H LTR MaLR -475 74 3 194 250 38 50 chr6 70561665 70561745 -111853497 + MIR SINE MIR 171 249 -13 623 245 72 32 chr6 70563923 70564172 -111851070 + L1MC4a LINE L1 5627 5885 -1923 606 314 67 24 chr6 70564398 70564726 -111850516 - L2 LINE L2 -612 2702 2361 434 296 61 29 chr6 70566784 70567064 -111848178 - L1ME3A LINE L1 -208 5962 5674 322 347 58 5 chr6 70567219 70567409 -111847833 - L1ME3A LINE L1 -819 5327 5128 1128 149 0 0 chr6 70567753 70567928 -111847314 - AluSg/x SINE Alu -5 305 131 204 40 0 0 chr6 70568014 70568039 -111847203 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3615 95 8 0 chr6 70568071 70568587 -111846655 - L1P LINE L1 -3870 2276 1757 394 290 173 43 chr6 70568588 70569049 -111846193 - L1ME3A LINE L1 -1539 4607 4097 330 269 21 0 chr6 70569106 70569199 -111846043 - L1ME3A LINE L1 -2161 3985 3891 186 43 0 0 chr6 70570092 70570115 -111845127 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 1363 168 18 31 chr6 70570115 70570401 -111844841 - AluSq SINE Alu -31 282 1 198 0 0 0 chr6 70570402 70570424 -111844818 + (T)n Simple_repeat Simple_repeat 1 22 0 415 326 219 16 chr6 70570430 70570795 -111844447 + L2 LINE L2 2875 3313 0 363 145 95 11 chr6 70571340 70571428 -111843814 - AluY SINE Alu 0 302 235 1187 101 0 0 chr6 70571428 70571587 -111843655 - AluY SINE Alu -103 208 50 2018 106 3 33 chr6 70571595 70571898 -111843344 + AluY SINE Alu 1 294 -17 490 297 267 24 chr6 70573686 70574177 -111841065 + L3 LINE CR1 941 1550 -27 355 68 34 0 chr6 70574638 70574697 -111840545 + (TC)n Simple_repeat Simple_repeat 1 61 0 1299 184 47 4 chr6 70574697 70574930 -111840312 - AluJo SINE Alu -25 287 45 202 250 31 0 chr6 70575671 70575735 -111839507 + CT-rich Low_complexity Low_complexity 2 67 0 337 211 165 18 chr6 70576230 70576339 -111838903 + MIR3 SINE MIR 83 207 -1 559 255 150 32 chr6 70578412 70578634 -111836608 + MLT1G LTR MaLR 357 590 0 215 274 21 74 chr6 70578687 70578782 -111836460 + L2 LINE L2 2477 2566 -748 673 357 93 26 chr6 70578819 70579430 -111835812 + L2 LINE L2 2658 3311 -2 261 317 118 43 chr6 70579533 70579580 -111835662 + MIR SINE MIR 57 99 -163 2323 113 11 8 chr6 70579580 70579934 -111835308 - THE1A LTR MaLR 0 355 1 10287 92 37 53 chr6 70579934 70581540 -111833702 - THE1A-int LTR MaLR 0 1580 1 2310 114 20 8 chr6 70581540 70581891 -111833351 - THE1A LTR MaLR 0 355 1 261 317 118 43 chr6 70581891 70582027 -111833215 + MIR SINE MIR 98 256 -6 21 36 0 0 chr6 70583244 70583272 -111831970 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 70583305 70583332 -111831910 + AT_rich Low_complexity Low_complexity 1 27 0 240 368 9 45 chr6 70584082 70584305 -111830937 + L2 LINE L2 2143 2357 -957 227 342 111 30 chr6 70584652 70584950 -111830292 + L2 LINE L2 2376 2697 -617 268 351 69 15 chr6 70585129 70585260 -111829982 + L2 LINE L2 2950 3087 -185 190 250 83 83 chr6 70585558 70585666 -111829576 + L2 LINE L2 3195 3302 -11 240 35 0 0 chr6 70585666 70585695 -111829547 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 287 297 27 0 chr6 70586154 70586228 -111829014 + L2 LINE L2 3116 3191 -81 227 316 130 54 chr6 70586399 70586715 -111828527 - MLT1J2 LTR MaLR -3 447 108 839 207 20 0 chr6 70586741 70586891 -111828351 - MER58B DNA MER1_type -6 335 183 655 288 24 34 chr6 70587851 70588056 -111827186 - MIR SINE MIR -32 230 28 300 248 98 75 chr6 70588726 70588859 -111826383 - MIR SINE MIR -27 235 100 21 57 0 0 chr6 70589579 70589614 -111825628 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr6 70590254 70590288 -111824954 + AT_rich Low_complexity Low_complexity 1 34 0 1310 251 88 7 chr6 70590567 70591001 -111824241 + Charlie1a DNA MER1_type 91 559 -896 1121 57 0 14 chr6 70591013 70591154 -111824088 + AluY SINE Alu 1 139 -172 676 54 14 0 chr6 70591161 70591262 -111823980 + L1PA4 LINE L1 6029 6130 -1 561 139 9 17 chr6 70591267 70591382 -111823860 + GA-rich Low_complexity Low_complexity 1 114 0 1011 12 6 48 chr6 70591485 70591650 -111823592 + (GAA)n Simple_repeat Simple_repeat 2 159 0 1255 94 0 0 chr6 70591650 70591820 -111823422 + AluY SINE Alu 131 300 -11 2832 208 45 18 chr6 70591820 70592545 -111822697 + Charlie1a DNA MER1_type 569 1313 -142 2541 224 61 22 chr6 70592545 70592614 -111822628 + L1M4c LINE L1 29 94 -6290 501 17 0 0 chr6 70592614 70592672 -111822570 + (TA)n Simple_repeat Simple_repeat 2 59 0 2277 112 0 0 chr6 70592672 70592977 -111822265 - AluSg SINE Alu -5 305 1 2541 224 61 22 chr6 70592977 70593500 -111821742 + L1M4c LINE L1 93 645 -5739 * 3907 194 71 41 chr6 70593487 70593768 -111821474 + L1M4c LINE L1 1372 1643 -4739 2205 128 0 0 chr6 70593768 70594072 -111821170 + AluSx SINE Alu 1 304 -8 3907 194 71 41 chr6 70594072 70595062 -111820180 + L1M4c LINE L1 1643 2676 -3706 2028 173 113 19 chr6 70595072 70595534 -111819708 + LTR22 LTR ERVK 1 505 -4 4962 115 37 12 chr6 70595539 70596288 -111818954 + HERVK22 LTR ERVK 1 768 -6069 18566 170 22 22 chr6 70596521 70599543 -111815699 + HERVK22 LTR ERVK 2327 6837 0 1632 199 109 50 chr6 70599546 70599633 -111815609 + LTR22 LTR ERVK 4 84 -425 2634 20 3 0 chr6 70599633 70599934 -111815308 + AluY SINE Alu 1 302 -9 1632 199 109 50 chr6 70599934 70600324 -111814918 + LTR22 LTR ERVK 84 509 0 1320 228 75 71 chr6 70600337 70601183 -111814059 + L1M4c LINE L1 2695 3526 -2856 297 258 32 0 chr6 70601183 70601276 -111813966 - L1M4 LINE L1 -1747 4399 4304 2895 207 79 32 chr6 70601294 70602256 -111812986 + L1MA9 LINE L1 4446 5454 -717 198 0 0 0 chr6 70603157 70603179 -111812063 + (GA)n Simple_repeat Simple_repeat 1 22 0 406 58 0 0 chr6 70603332 70603384 -111811858 - L1MA9 LINE L1 -591 5743 5692 1666 200 22 90 chr6 70603391 70603936 -111811306 + L1MA9 LINE L1 5767 6274 -38 21 71 0 0 chr6 70605023 70605065 -111810177 + AT_rich Low_complexity Low_complexity 1 42 0 5230 111 18 36 chr6 70605655 70605757 -111809485 + L1PA13 LINE L1 5302 5404 -759 2143 110 10 0 chr6 70605757 70606049 -111809193 + AluSc SINE Alu 1 295 -14 5230 111 18 36 chr6 70606049 70606824 -111808418 + L1PA13 LINE L1 5404 6163 0 43 35 0 0 chr6 70607095 70607152 -111808090 + AT_rich Low_complexity Low_complexity 1 57 0 18876 123 30 33 chr6 70607650 70611710 -111803532 + L1P3 LINE L1 5 4174 -2287 11867 97 17 0 chr6 70611710 70614256 -111800986 + L1PA7 LINE L1 3560 6151 -3 243 273 7 32 chr6 70614758 70614846 -111800396 + T-rich Low_complexity Low_complexity 2 86 -65 1520 167 0 4 chr6 70614846 70615116 -111800126 - L1MA3 LINE L1 -8 6297 6029 243 273 7 32 chr6 70615116 70615181 -111800061 + T-rich Low_complexity Low_complexity 86 151 0 273 98 0 0 chr6 70615704 70615745 -111799497 + (TG)n Simple_repeat Simple_repeat 2 42 0 360 111 0 0 chr6 70615762 70615816 -111799426 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 508 305 18 49 chr6 70615960 70616245 -111798997 - L1MEc LINE L1 -4607 2114 1839 266 265 73 58 chr6 70616259 70616519 -111798723 - L1MEc LINE L1 -4889 1651 1388 403 264 60 99 chr6 70616520 70616884 -111798358 - L1MEc LINE L1 -5296 1425 1076 256 299 39 49 chr6 70617001 70617205 -111798037 - HAL1 LINE L1 -33 2474 2273 311 369 0 0 chr6 70617311 70617414 -111797828 - HAL1 LINE L1 -687 1820 1718 404 332 37 75 chr6 70618184 70618371 -111796871 + MER91A DNA MER1_type 1 180 -16 1883 218 77 8 chr6 70619101 70619597 -111795645 - L1MB8 LINE L1 0 6178 5649 465 390 4 22 chr6 70619907 70620181 -111795061 + LTR16A LTR ERVL 26 294 -156 4207 227 29 3 chr6 70620181 70621187 -111794055 + L1 LINE L1 3616 4647 -1499 323 270 8 32 chr6 70621171 70621297 -111793945 + L1PB1 LINE L1 94 216 -6647 * 4999 150 46 3 chr6 70621274 70622180 -111793062 + L1PB1 LINE L1 1392 2336 -4527 624 239 77 63 chr6 70622263 70622664 -111792578 + LTR30 LTR ERV1 108 469 -24 1147 233 40 48 chr6 70622687 70623065 -111792177 + HERV15 LTR ERV1 1 375 -8360 22238 283 31 32 chr6 70623133 70631225 -111784017 + HERV15 LTR ERV1 654 8734 -1 696 199 107 71 chr6 70631313 70631745 -111783497 + LTR30 LTR ERV1 224 596 0 14597 200 10 6 chr6 70631746 70635775 -111779467 + L1PB1 LINE L1 2401 6430 -437 2100 146 14 0 chr6 70635777 70636127 -111779115 + L1PB1 LINE L1 6510 6864 -3 4499 137 75 14 chr6 70636283 70637753 -111777489 + L1PA16 LINE L1 4629 6157 -9 553 230 33 33 chr6 70637766 70637918 -111777324 + LTR16A LTR ERVL 299 450 0 29847 35 5 1 chr6 70638364 70642786 -111772456 + L1PA4 LINE L1 1713 6152 -3 295 270 124 22 chr6 70643015 70643152 -111772090 + L1MC4 LINE L1 6703 6853 -1189 873 232 49 67 chr6 70643166 70643657 -111771585 + L1MC5 LINE L1 7425 7906 -55 27 0 0 0 chr6 70644100 70644127 -111771115 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 70646015 70646043 -111769199 + AT_rich Low_complexity Low_complexity 1 28 0 2119 135 13 39 chr6 70646826 70647211 -111768031 + THE1C LTR MaLR 1 375 0 275 85 21 0 chr6 70647489 70647536 -111767706 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 342 267 10 0 chr6 70648066 70648167 -111767075 + MER113 DNA MER1_type? 7 108 -413 23 0 0 0 chr6 70648270 70648293 -111766949 + AT_rich Low_complexity Low_complexity 1 23 0 381 283 46 53 chr6 70648336 70648488 -111766754 + MIR SINE MIR 111 261 -1 241 289 92 0 chr6 70648626 70648702 -111766540 + L2 LINE L2 3180 3262 -10 276 296 71 71 chr6 70649022 70649191 -111766051 - L2 LINE L2 -4 3268 3100 26 30 0 0 chr6 70649423 70649456 -111765786 + AT_rich Low_complexity Low_complexity 1 33 0 276 223 85 0 chr6 70651022 70651116 -111764126 + MER113 DNA MER1_type? 7 108 -413 641 230 183 0 chr6 70651310 70651501 -111763741 + MIR SINE MIR 9 234 -28 281 306 51 0 chr6 70651774 70651872 -111763370 - L2 LINE L2 -14 3258 3156 222 234 31 0 chr6 70652015 70652079 -111763163 - MIR SINE MIR -34 228 163 40 21 0 0 chr6 70652149 70652196 -111763046 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr6 70652262 70652283 -111762959 + AT_rich Low_complexity Low_complexity 1 21 0 400 84 14 0 chr6 70652283 70652354 -111762888 - L1MA2 LINE L1 0 6304 6233 254 253 0 0 chr6 70652355 70652423 -111762819 + L1 LINE L1 4873 4940 -1206 802 236 37 9 chr6 70653727 70653943 -111761299 - MER58A DNA MER1_type -2 222 1 364 369 82 46 chr6 70655438 70655606 -111759636 - L3 LINE CR1 -72 1505 1320 1372 231 47 14 chr6 70655606 70655965 -111759277 - MLT1A2 LTR MaLR 0 374 4 364 369 82 46 chr6 70655965 70656102 -111759140 - L3 LINE CR1 -257 1320 1189 219 256 26 51 chr6 70657266 70657344 -111757898 - L2 LINE L2 -4 3309 3234 321 141 35 24 chr6 70659000 70659085 -111756157 + CT-rich Low_complexity Low_complexity 3 88 0 514 175 10 31 chr6 70659085 70659182 -111756060 - AluJb SINE Alu -63 249 155 330 313 55 40 chr6 70659534 70659735 -111755507 + MIR SINE MIR 59 262 0 276 329 94 7 chr6 70660310 70660459 -111754783 + MIR3 SINE MIR 46 207 -1 1237 135 5 0 chr6 70660791 70660984 -111754258 + L1PB4 LINE L1 5961 6154 -2 1191 212 108 3 chr6 70661676 70661983 -111753259 - MER44D DNA MER2_type 0 609 1 297 279 76 14 chr6 70663846 70664013 -111751229 + MLT1G1 LTR MaLR 41 179 -376 5036 126 25 22 chr6 70664013 70665700 -111749542 - L1PA15 LINE L1 -5 7598 5873 305 231 0 0 chr6 70665755 70665820 -111749422 + L1P LINE L1 4199 4263 -1883 * 12494 227 21 29 chr6 70665818 70669328 -111745914 - L1PA15 LINE L1 -1710 5874 2393 316 284 199 32 chr6 70670405 70670687 -111744555 + L1M2 LINE L1 696 1024 -5825 269 301 0 28 chr6 70670725 70670868 -111744374 + G-rich Low_complexity Low_complexity 5 143 0 497 305 19 48 chr6 70671101 70671472 -111743770 - L1PA15 LINE L1 -7214 367 8 189 154 0 0 chr6 70671560 70671599 -111743643 + GA-rich Low_complexity Low_complexity 1 39 0 389 306 8 15 chr6 70671685 70671819 -111743423 + MLT1G1 LTR MaLR 455 587 -8 24 0 0 0 chr6 70673518 70673542 -111741700 + AT_rich Low_complexity Low_complexity 1 24 0 344 299 111 26 chr6 70673722 70673818 -111741424 + L2 LINE L2 3187 3296 -17 369 62 0 0 chr6 70673818 70673866 -111741376 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 344 299 111 26 chr6 70673866 70673886 -111741356 + L2 LINE L2 3296 3313 0 699 341 18 0 chr6 70674153 70674392 -111740850 + MIR SINE MIR 20 262 0 749 285 31 0 chr6 70674554 70674747 -111740495 + MIR SINE MIR 29 227 -35 183 42 0 0 chr6 70674747 70674771 -111740471 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 36 23 0 0 chr6 70675091 70675134 -111740108 + AT_rich Low_complexity Low_complexity 1 43 0 252 335 68 26 chr6 70675337 70675532 -111739710 - MIR SINE MIR -49 213 5 364 323 47 42 chr6 70676574 70676766 -111738476 - MIR3 SINE MIR -4 204 12 22 0 0 0 chr6 70676787 70676809 -111738433 + AT_rich Low_complexity Low_complexity 1 22 0 2145 107 3 7 chr6 70677474 70677774 -111737468 + AluSg SINE Alu 1 299 -11 287 326 125 12 chr6 70678158 70678501 -111736741 - L1ME3A LINE L1 -221 5949 5568 664 309 171 16 chr6 70678777 70679263 -111735979 + L2 LINE L2 1928 2488 -826 1735 164 0 44 chr6 70679746 70680063 -111735179 + AluJb SINE Alu 3 305 -7 2286 137 19 6 chr6 70682980 70683339 -111731903 - THE1B LTR MaLR 0 364 1 32 26 0 0 chr6 70684162 70684201 -111731041 + AT_rich Low_complexity Low_complexity 1 39 0 662 245 87 5 chr6 70684982 70685178 -111730064 + MER58A DNA MER1_type 1 212 -12 16684 50 59 4 chr6 70685261 70687434 -111727808 + L1P LINE L1 3 2295 -3851 2205 145 19 6 chr6 70689371 70689730 -111725512 - THE1B LTR MaLR 0 364 1 32 26 0 0 chr6 70690552 70690591 -111724651 + AT_rich Low_complexity Low_complexity 1 39 0 289 305 48 9 chr6 70690677 70690782 -111724460 - L2 LINE L2 -5 3308 3200 25 31 0 0 chr6 70691771 70691803 -111723439 + AT_rich Low_complexity Low_complexity 1 32 0 682 240 87 5 chr6 70692610 70692806 -111722436 + MER58A DNA MER1_type 1 212 -12 42162 38 22 2 chr6 70692889 70698919 -111716323 + L1PA2 LINE L1 3 6152 -3 256 308 68 0 chr6 70699035 70699152 -111716090 - L1ME3A LINE L1 -8 6162 6038 216 200 0 0 chr6 70699171 70699221 -111716021 + (CA)n Simple_repeat Simple_repeat 2 51 0 319 262 173 15 chr6 70699244 70699446 -111715796 - L1ME3A LINE L1 -291 5879 5646 843 294 104 16 chr6 70699463 70700021 -111715221 - L1ME3A LINE L1 -865 5281 4675 258 226 83 0 chr6 70700054 70700138 -111715104 - L1M4 LINE L1 -1302 4844 4754 360 290 151 36 chr6 70700214 70700963 -111714279 - L1M4 LINE L1 -2241 3905 3071 411 236 60 28 chr6 70701118 70701300 -111713942 - L1M4 LINE L1 -3106 3040 2853 273 234 140 9 chr6 70701668 70701775 -111713467 - L1M4 LINE L1 -3373 2773 2653 195 100 0 0 chr6 70701800 70701830 -111713412 + (CA)n Simple_repeat Simple_repeat 2 31 0 25 31 0 0 chr6 70702561 70702593 -111712649 + AT_rich Low_complexity Low_complexity 1 32 0 456 256 0 47 chr6 70702906 70703035 -111712207 + MLT2C1 LTR ERVL 271 393 -4 22 0 0 0 chr6 70704768 70704790 -111710452 + AT_rich Low_complexity Low_complexity 1 22 0 338 89 18 0 chr6 70704820 70704876 -111710366 - L1MA4A LINE L1 -3 6300 6244 26 30 0 0 chr6 70704919 70704952 -111710290 + AT_rich Low_complexity Low_complexity 1 33 0 2229 97 0 7 chr6 70706658 70706948 -111708294 - AluSg SINE Alu -18 292 5 303 49 0 0 chr6 70707668 70707709 -111707533 + (TG)n Simple_repeat Simple_repeat 1 41 0 209 318 0 16 chr6 70707744 70707807 -111707435 + MIR SINE MIR 21 82 -180 197 295 80 36 chr6 70707851 70707963 -111707279 - L2 LINE L2 -32 3281 3165 1240 212 0 20 chr6 70708512 70708757 -111706485 + AluJo SINE Alu 1 240 -72 319 280 0 21 chr6 70708757 70708850 -111706392 + L1MC4 LINE L1 6613 6703 -1339 231 179 54 0 chr6 70708851 70708907 -111706335 + L1MCa LINE L1 2006 2064 -4362 417 284 171 29 chr6 70710123 70710398 -111704844 + LTR33 LTR ERVL 208 521 0 318 26 0 0 chr6 70710477 70710516 -111704726 + (CAA)n Simple_repeat Simple_repeat 2 40 0 551 273 81 84 chr6 70710596 70710723 -111704519 + HAL1 LINE L1 1261 1387 -1120 1737 223 3 6 chr6 70710723 70711087 -111704155 + MLT1A1 LTR MaLR 1 363 -2 551 273 81 84 chr6 70711087 70711504 -111703738 + HAL1 LINE L1 1387 1803 -704 208 167 24 0 chr6 70713309 70713351 -111701891 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 205 347 73 32 chr6 70713674 70713798 -111701444 - MIR SINE MIR -133 129 1 461 338 106 8 chr6 70713938 70714175 -111701067 - MIR SINE MIR 0 262 3 1942 137 10 7 chr6 70714418 70714718 -111700524 - AluSx SINE Alu -11 301 1 25 31 0 0 chr6 70714729 70714761 -111700481 + AT_rich Low_complexity Low_complexity 1 32 0 732 103 0 0 chr6 70715890 70715987 -111699255 - THE1C LTR MaLR 0 375 279 * 951 126 15 0 chr6 70715985 70716120 -111699122 - THE1C LTR MaLR -238 137 1 9196 127 12 70 chr6 70716120 70717797 -111697445 - THE1C-int LTR MaLR 0 1580 1 2299 123 21 19 chr6 70717797 70718171 -111697071 - THE1C LTR MaLR 0 375 1 207 167 0 0 chr6 70718545 70718587 -111696655 + GA-rich Low_complexity Low_complexity 2 43 0 360 0 0 0 chr6 70718607 70718647 -111696595 + (TG)n Simple_repeat Simple_repeat 2 41 0 530 179 11 0 chr6 70718757 70718852 -111696390 + MER20 DNA MER1_type 110 205 -14 369 104 39 0 chr6 70718853 70718930 -111696312 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 236 376 40 48 chr6 70719798 70719923 -111695319 - L2 LINE L2 0 3313 3190 1449 121 0 0 chr6 70720427 70720626 -111694616 + AluSg/x SINE Alu 82 280 -32 22 35 0 0 chr6 70721168 70721197 -111694045 + AT_rich Low_complexity Low_complexity 1 29 0 638 351 96 65 chr6 70721505 70722194 -111693048 - L2 LINE L2 0 3313 2576 2202 114 3 0 chr6 70722194 70722501 -111692741 + AluSq SINE Alu 1 308 -5 638 351 96 65 chr6 70722501 70722842 -111692400 - L2 LINE L2 -737 2576 2247 266 302 170 6 chr6 70722851 70723010 -111692232 - L2 LINE L2 -1230 2084 1900 330 359 8 0 chr6 70723011 70723128 -111692114 - MER94 DNA DNA 0 134 17 393 332 107 39 chr6 70723137 70723520 -111691722 - L2 LINE L2 -1411 1903 1495 558 275 6 12 chr6 70726061 70726221 -111689021 + MLT1J2 LTR MaLR 41 199 -251 1043 235 31 27 chr6 70726577 70726837 -111688405 - MLT1B LTR MaLR -127 263 3 207 176 46 56 chr6 70727896 70728004 -111687238 + (TATAA)n Simple_repeat Simple_repeat 3 109 0 21 36 0 0 chr6 70728844 70728872 -111686370 + AT_rich Low_complexity Low_complexity 1 28 0 350 310 130 10 chr6 70729203 70729309 -111685933 + MIR SINE MIR 37 129 -133 1889 161 17 73 chr6 70729309 70729720 -111685522 + MLT1B LTR MaLR 1 388 -2 350 310 130 10 chr6 70729720 70729816 -111685426 + MIR SINE MIR 129 262 0 276 310 138 9 chr6 70729977 70730093 -111685149 + MIR SINE MIR 26 156 -106 210 231 0 0 chr6 70730777 70730816 -111684426 + polypyrimidine Low_complexity Low_complexity 2 40 0 22 35 0 0 chr6 70730973 70731002 -111684240 + AT_rich Low_complexity Low_complexity 1 29 0 260 230 90 10 chr6 70731136 70731236 -111684006 + L1ME4a LINE L1 6012 6119 -2 238 284 15 0 chr6 70731795 70731862 -111683380 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 289 336 98 0 chr6 70732828 70732950 -111682292 + MIR SINE MIR 18 151 -111 564 225 29 0 chr6 70733553 70733691 -111681551 - Charlie1 DNA MER1_type 0 2761 2620 265 268 0 0 chr6 70733685 70733756 -111681486 - Charlie1 DNA MER1_type -2534 227 157 * 355 270 101 6 chr6 70734254 70734432 -111680810 - LTR33A LTR ERVL 0 523 329 17298 52 18 0 chr6 70734490 70737476 -111677766 + L1PA7 LINE L1 3149 6150 -4 1999 106 21 3 chr6 70737764 70738047 -111677195 - AluSq SINE Alu -25 288 1 215 67 44 44 chr6 70738178 70738223 -111677019 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 233 111 0 0 chr6 70738798 70738834 -111676408 + MADE1 DNA Mariner 1 36 -44 3340 162 7 5 chr6 70738834 70739391 -111675851 - L1PA15 LINE L1 -27 6138 5581 451 161 23 0 chr6 70739393 70739480 -111675762 + L1P LINE L1 5091 5179 -967 27 0 0 0 chr6 70739699 70739726 -111675516 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr6 70740808 70740837 -111674405 + AT_rich Low_complexity Low_complexity 1 29 0 201 129 0 0 chr6 70741292 70741323 -111673919 + (TG)n Simple_repeat Simple_repeat 2 32 0 7316 145 52 10 chr6 70741672 70742410 -111672832 + HSMAR2 DNA Mariner 4 710 -592 2134 125 51 20 chr6 70742410 70742763 -111672479 + THE1B LTR MaLR 1 364 0 11517 103 1 1 chr6 70742763 70744344 -111670898 + THE1B-int LTR MaLR 1 1580 0 1743 149 31 100 chr6 70744344 70744733 -111670509 + THE1B LTR MaLR 1 362 -2 7316 145 52 10 chr6 70744733 70745238 -111670004 + HSMAR2 DNA Mariner 709 1301 -1 2267 161 49 5 chr6 70745497 70745902 -111669340 + MSTB LTR MaLR 4 426 0 410 298 21 62 chr6 70746310 70746552 -111668690 - MLT1L LTR MaLR -13 602 371 200 255 20 0 chr6 70748770 70748821 -111666421 + L2 LINE L2 2688 2739 -575 42355 46 1 1 chr6 70748826 70754855 -111660387 + L1PA4 LINE L1 122 6155 0 246 286 66 31 chr6 70755037 70755233 -111660009 - L1M4 LINE L1 -1310 6255 6053 427 158 0 13 chr6 70755319 70755395 -111659847 + Tigger2 DNA MER2_type 1 75 -2643 318 212 0 140 chr6 70755501 70755636 -111659606 - MER8 DNA MER2_type -126 113 2 23 33 0 0 chr6 70755806 70755836 -111659406 + AT_rich Low_complexity Low_complexity 1 30 0 671 167 0 33 chr6 70755926 70756046 -111659196 - FLAM_C SINE Alu -23 120 5 301 333 90 10 chr6 70756057 70756258 -111658984 - L1M4 LINE L1 -1909 5656 5440 181 29 59 29 chr6 70756260 70756294 -111658948 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2413 86 3 9 chr6 70756294 70756633 -111658609 - L1PA8 LINE L1 -24 6148 5812 402 304 88 22 chr6 70756740 70756967 -111658275 - L1M4 LINE L1 -2280 5285 5044 216 297 13 82 chr6 70757258 70757380 -111657862 + MIR SINE MIR 37 152 -56 3302 239 79 20 chr6 70757819 70759512 -111655730 - L1M4 LINE L1 -3112 4453 2648 21 0 0 0 chr6 70759943 70759964 -111655278 + AT_rich Low_complexity Low_complexity 1 21 0 1880 184 56 27 chr6 70760227 70760759 -111654483 - MLT2A2 LTR ERVL 0 554 1 23 0 0 0 chr6 70760972 70760995 -111654247 + AT_rich Low_complexity Low_complexity 1 23 0 207 69 0 0 chr6 70762197 70762226 -111653016 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 783 302 54 6 chr6 70763359 70763674 -111651568 - HAL1 LINE L1 -2174 333 4 2263 71 0 19 chr6 70763777 70764085 -111651157 - AluY SINE Alu -9 302 1 5401 187 25 52 chr6 70764529 70767705 -111647537 + L1MA8 LINE L1 3273 6268 -23 293 279 11 74 chr6 70767726 70768013 -111647229 + L1M4 LINE L1 5150 5418 -736 296 286 31 20 chr6 70768358 70768456 -111646786 + L1M2 LINE L1 945 1043 -5806 5168 264 77 22 chr6 70768465 70769335 -111645907 + L1 LINE L1 802 1623 -5226 4866 121 13 4 chr6 70769335 70770079 -111645163 - L1PA15 LINE L1 -8 6157 5407 5168 264 77 22 chr6 70770079 70770110 -111645132 + L1 LINE L1 1623 1651 -5198 7633 56 34 2 chr6 70770110 70770795 -111644447 + LTR13 LTR ERVK 1 728 -279 186 43 0 0 chr6 70770795 70770818 -111644424 + (TC)n Simple_repeat Simple_repeat 2 24 0 7633 56 34 2 chr6 70770818 70771108 -111644134 + LTR13 LTR ERVK 728 1007 0 5168 264 77 22 chr6 70771108 70771341 -111643901 + L1 LINE L1 1651 1870 -4979 1202 130 101 0 chr6 70771341 70771548 -111643694 + MER30 DNA MER1_type 3 230 0 5168 264 77 22 chr6 70771548 70772017 -111643225 + L1 LINE L1 1870 2495 -4354 3085 189 22 5 chr6 70772016 70772658 -111642584 + L1 LINE L1 4780 5432 -1416 * 1281 157 55 0 chr6 70772656 70772892 -111642350 + L1MA4 LINE L1 6002 6250 -50 * 332 268 40 128 chr6 70774644 70775066 -111640176 + MER110 LTR ERV1 75 459 -32 248 267 233 9 chr6 70775565 70775681 -111639561 + MIR SINE MIR 1 142 -120 226 284 10 69 chr6 70776056 70776104 -111639138 + MIR SINE MIR 151 191 -71 2812 7 0 0 chr6 70776104 70776413 -111638829 + AluYa5 SINE Alu 1 309 -2 226 284 10 69 chr6 70776413 70776466 -111638776 + MIR SINE MIR 191 246 -16 187 271 42 83 chr6 70776520 70776616 -111638626 + MIR SINE MIR 97 188 -74 1466 197 14 28 chr6 70776633 70776923 -111638319 - AluJo SINE Alu -24 288 3 256 314 119 8 chr6 70779105 70779223 -111636019 + L2 LINE L2 3182 3312 -1 39 60 0 0 chr6 70779223 70779290 -111635952 + AT_rich Low_complexity Low_complexity 1 67 0 427 304 50 0 chr6 70779430 70779591 -111635651 - MIR SINE MIR 0 262 94 33 85 0 0 chr6 70779601 70779683 -111635559 + AT_rich Low_complexity Low_complexity 1 82 0 407 167 13 0 chr6 70780598 70780676 -111634566 - MLT1I LTR MaLR -8 401 323 252 211 10 19 chr6 70782029 70782133 -111633109 + (TA)n Simple_repeat Simple_repeat 2 104 0 280 308 83 19 chr6 70782444 70782600 -111632642 - MIR3 SINE MIR -11 197 32 254 218 18 0 chr6 70783059 70783114 -111632128 - MLT1L LTR MaLR -409 206 151 467 278 106 0 chr6 70783284 70783464 -111631778 + MIR SINE MIR 53 251 -11 777 204 19 31 chr6 70783919 70784081 -111631161 - MER58B DNA MER1_type -15 326 167 21 0 0 0 chr6 70788607 70788628 -111626614 + AT_rich Low_complexity Low_complexity 1 21 0 396 254 174 0 chr6 70789653 70789791 -111625451 + MIR SINE MIR 101 262 0 95 44 0 0 chr6 70790324 70790461 -111624781 + AT_rich Low_complexity Low_complexity 1 137 0 531 257 55 60 chr6 70792362 70792580 -111622662 - MIR SINE MIR -2 260 44 226 224 0 0 chr6 70792733 70792782 -111622460 - MIR SINE MIR -31 231 183 207 0 0 0 chr6 70793304 70793327 -111621915 + (TTG)n Simple_repeat Simple_repeat 2 24 0 234 317 0 0 chr6 70793692 70793752 -111621490 - L2 LINE L2 -20 3252 3193 588 75 0 0 chr6 70794483 70794563 -111620679 - L1PA5 LINE L1 0 6154 6075 297 311 98 36 chr6 70794986 70795179 -111620063 + L2 LINE L2 2583 2787 -527 23 0 0 0 chr6 70796964 70796987 -111618255 + AT_rich Low_complexity Low_complexity 1 23 0 214 325 68 68 chr6 70798199 70798405 -111616837 - L2 LINE L2 -250 3022 2817 533 265 87 25 chr6 70799012 70799208 -111616034 - MIR SINE MIR -42 220 13 5475 69 17 0 chr6 70799297 70800018 -111615224 - L1PA8 LINE L1 -7 6165 5433 27 0 0 0 chr6 70800396 70800423 -111614819 + AT_rich Low_complexity Low_complexity 1 27 0 234 174 0 0 chr6 70802268 70802314 -111612928 + (TA)n Simple_repeat Simple_repeat 2 47 0 727 256 37 11 chr6 70802723 70802914 -111612328 + MIR SINE MIR 28 223 -39 278 26 26 0 chr6 70803057 70803096 -111612146 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1972 46 73 4 chr6 70803097 70803356 -111611886 - AluY SINE Alu -34 277 1 23 33 0 0 chr6 70803606 70803636 -111611606 + AT_rich Low_complexity Low_complexity 1 30 0 1698 163 129 13 chr6 70804583 70804963 -111610279 + MSTA LTR MaLR 1 424 -4 225 304 0 25 chr6 70805297 70805376 -111609866 - L2 LINE L2 -1 3312 3236 252 350 0 26 chr6 70805811 70805928 -111609314 + L2 LINE L2 3197 3310 -3 195 355 36 36 chr6 70806803 70806913 -111608329 + MIR SINE MIR 28 137 -71 22 0 0 0 chr6 70807342 70807364 -111607878 + AT_rich Low_complexity Low_complexity 1 22 0 2123 98 10 0 chr6 70807465 70807760 -111607482 + AluY SINE Alu 1 298 -13 236 29 0 0 chr6 70807806 70807841 -111607401 - Alu SINE Alu -4 296 262 341 65 0 0 chr6 70808022 70808068 -111607174 - L1PA5 LINE L1 -2 6152 6107 588 55 0 0 chr6 70808068 70808141 -111607101 + L1PA4 LINE L1 5827 5899 -256 209 329 61 0 chr6 70809253 70809335 -111605907 + MIR3 SINE MIR 113 199 -9 369 0 0 0 chr6 70809386 70809427 -111605815 + (TTA)n Simple_repeat Simple_repeat 2 42 0 553 176 0 0 chr6 70809472 70809563 -111605679 - Charlie1 DNA MER1_type -1 2760 2670 26 50 0 0 chr6 70809932 70809972 -111605270 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr6 70810039 70810061 -111605181 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr6 70811472 70811508 -111603734 + AT_rich Low_complexity Low_complexity 1 36 0 355 81 0 58 chr6 70812057 70812144 -111603098 + (TA)n Simple_repeat Simple_repeat 1 82 0 294 194 0 0 chr6 70812922 70812984 -111602258 + (CATA)n Simple_repeat Simple_repeat 3 64 0 22 0 0 0 chr6 70813983 70814005 -111601237 + AT_rich Low_complexity Low_complexity 1 22 0 25 83 0 0 chr6 70816203 70816263 -111598979 + AT_rich Low_complexity Low_complexity 1 60 0 26 50 0 0 chr6 70816561 70816601 -111598641 + AT_rich Low_complexity Low_complexity 1 40 0 830 147 1 23 chr6 70816934 70817101 -111598141 + L1PA13 LINE L1 5933 6093 -70 1289 112 0 5 chr6 70817101 70817298 -111597944 + L1PA13 LINE L1 5964 6159 -4 21 0 0 0 chr6 70817304 70817325 -111597917 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 70817617 70817645 -111597597 + AT_rich Low_complexity Low_complexity 1 28 0 2274 126 24 21 chr6 70819444 70819818 -111595424 + THE1C LTR MaLR 1 375 0 229 184 0 0 chr6 70821675 70821713 -111593529 - LTR33A LTR ERVL 0 523 486 1007 219 76 95 chr6 70821748 70822117 -111593125 - MER57A LTR ERV1 0 403 42 352 282 19 0 chr6 70822378 70822481 -111592761 - MLT2E LTR ERVL -480 148 44 2507 187 22 0 chr6 70825171 70825680 -111589562 - L1PA14 LINE L1 -850 5296 4777 5523 124 7 1 chr6 70825680 70826525 -111588717 + L1PA14 LINE L1 5312 6161 0 3581 176 60 8 chr6 70826529 70827263 -111587979 + L1MD1 LINE L1 5470 6241 -1 29 70 0 0 chr6 70827264 70827321 -111587921 + AT_rich Low_complexity Low_complexity 1 57 0 197 263 40 26 chr6 70828178 70828254 -111586988 + L3 LINE CR1 627 703 -874 23 0 0 0 chr6 70828575 70828598 -111586644 + AT_rich Low_complexity Low_complexity 1 23 0 276 289 36 0 chr6 70830447 70830530 -111584712 + MIR SINE MIR 140 225 -37 2117 80 59 0 chr6 70832216 70832384 -111582858 - AluY SINE Alu -6 305 112 485 16 16 0 chr6 70832384 70832446 -111582796 + (TTTTA)n Simple_repeat Simple_repeat 2 64 0 2117 80 59 0 chr6 70832446 70832565 -111582677 - AluY SINE Alu -199 112 1 26 50 0 0 chr6 70832565 70832605 -111582637 + AT_rich Low_complexity Low_complexity 1 40 0 2422 58 0 0 chr6 70833262 70833556 -111581686 + AluY SINE Alu 1 294 -17 180 0 0 0 chr6 70833556 70833576 -111581666 + (TTAAA)n Simple_repeat Simple_repeat 2 21 0 866 311 58 68 chr6 70833588 70834780 -111580462 + L1MCc LINE L1 1263 2657 -4465 537 241 59 18 chr6 70834797 70835017 -111580225 + L1ME2 LINE L1 5935 6163 -1 215 308 34 0 chr6 70835353 70835470 -111579772 + T-rich Low_complexity Low_complexity 3 123 0 215 229 21 0 chr6 70835744 70835792 -111579450 + (CA)n Simple_repeat Simple_repeat 1 49 0 1870 150 7 13 chr6 70836290 70836597 -111578645 + AluJb SINE Alu 1 305 -7 40 73 0 0 chr6 70837625 70837707 -111577535 + AT_rich Low_complexity Low_complexity 1 82 0 3747 12 0 0 chr6 70837844 70838272 -111576970 - L1PA2 LINE L1 -3 6152 5725 410 316 63 29 chr6 70839482 70839729 -111575513 - MIR SINE MIR 0 262 10 564 91 11 23 chr6 70839852 70839949 -111575293 - L1MB3 LINE L1 -255 5928 5840 950 119 20 0 chr6 70839949 70840098 -111575144 + L1MB2 LINE L1 6008 6161 -10 1350 209 16 32 chr6 70840122 70840433 -111574809 + AluJo SINE Alu 5 310 -2 2226 114 0 3 chr6 70841310 70841618 -111573624 - AluSx SINE Alu -5 307 1 258 263 96 58 chr6 70842520 70842676 -111572566 + MIR SINE MIR 51 212 -50 28 0 0 0 chr6 70843047 70843075 -111572167 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 70844245 70844280 -111570962 + AT_rich Low_complexity Low_complexity 1 35 0 214 238 63 0 chr6 70844594 70844657 -111570585 + MIR SINE MIR 120 186 -76 211 333 52 21 chr6 70844653 70844749 -111570493 - MIR SINE MIR -112 150 52 * 355 270 101 6 chr6 70845125 70845303 -111569939 - LTR33A LTR ERVL 0 523 329 17955 40 1 2 chr6 70845361 70847759 -111567483 + L1P2 LINE L1 3149 5543 -612 1619 86 0 5 chr6 70847760 70847982 -111567260 - pTR5 LTR ERV1 -2046 392 172 426 250 16 0 chr6 70847985 70848109 -111567133 - LTR30 LTR ERV1 -80 642 517 3798 124 179 35 chr6 70848109 70849045 -111566197 - pTR5 LTR ERV1 -439 1999 759 5036 51 2 0 chr6 70849045 70849676 -111565566 + L1PA4 LINE L1 5524 6155 0 6049 39 0 0 chr6 70850570 70851309 -111563933 - L1PA4 LINE L1 0 6155 5417 3887 24 4 0 chr6 70851309 70851766 -111563476 + L1P LINE L1 4002 4460 -1686 250 264 11 0 chr6 70851929 70852020 -111563222 + L1MC4 LINE L1 6612 6703 -1339 273 119 0 0 chr6 70852020 70852062 -111563180 + (TA)n Simple_repeat Simple_repeat 2 43 0 415 101 0 14 chr6 70852299 70852368 -111562874 + MER4B LTR ERV1 1 68 -542 1364 147 0 0 chr6 70852368 70852572 -111562670 - AluSx SINE Alu -9 303 100 1413 62 0 4 chr6 70852598 70852796 -111562446 - L1ME LINE L1 -567 5595 5403 625 170 0 0 chr6 70852804 70852904 -111562338 - AluSx SINE Alu -212 100 1 4057 131 63 91 chr6 70852905 70853467 -111561775 + MER4D LTR ERV1 56 587 -316 1824 128 3 21 chr6 70853467 70853749 -111561493 + AluSg SINE Alu 1 277 -33 4057 131 63 91 chr6 70853749 70854058 -111561184 + MER4D LTR ERV1 587 903 0 4584 170 60 16 chr6 70855395 70856451 -111558791 + L1MA8 LINE L1 5172 6271 -20 28 0 0 0 chr6 70856451 70856479 -111558763 + AT_rich Low_complexity Low_complexity 1 28 0 249 208 4 8 chr6 70856482 70856560 -111558682 + L1ME1 LINE L1 5352 5428 -814 249 115 96 19 chr6 70856547 70856590 -111558652 - L1MA4 LINE L1 -79 6221 6172 308 185 0 0 chr6 70856590 70856655 -111558587 + L1MA4 LINE L1 6219 6283 -17 2367 261 37 13 chr6 70856776 70857472 -111557770 + L1ME1 LINE L1 5449 6161 -5 474 49 0 0 chr6 70858026 70858087 -111557155 + (CA)n Simple_repeat Simple_repeat 2 62 0 965 250 0 19 chr6 70858572 70858780 -111556462 + MER58A DNA MER1_type 2 205 -19 24 0 0 0 chr6 70859040 70859064 -111556178 + AT_rich Low_complexity Low_complexity 1 24 0 741 200 22 43 chr6 70859136 70859321 -111555921 + MER20 DNA MER1_type 34 214 -5 183 130 56 19 chr6 70859341 70859395 -111555847 + A-rich Low_complexity Low_complexity 2 57 0 619 202 0 16 chr6 70860066 70860086 -111555156 - FRAM SINE Alu -141 171 152 423 56 0 0 chr6 70860086 70860140 -111555102 + (TG)n Simple_repeat Simple_repeat 1 54 0 619 202 0 16 chr6 70860140 70860248 -111554994 - FRAM SINE Alu -160 152 45 1537 132 4 4 chr6 70860598 70860840 -111554402 - L1PA13 LINE L1 -11 6152 5911 24 53 0 0 chr6 70861535 70861573 -111553669 + AT_rich Low_complexity Low_complexity 1 38 0 4999 178 26 8 chr6 70861694 70862648 -111552594 + L1P LINE L1 3658 4628 -1518 1127 162 75 24 chr6 70862645 70862898 -111552344 + L1 LINE L1 4543 4808 -1338 * 315 331 55 28 chr6 70864448 70864593 -111550649 - L2 LINE L2 0 3313 3165 44 35 0 0 chr6 70864727 70864785 -111550457 + AT_rich Low_complexity Low_complexity 1 58 0 1589 127 29 0 chr6 70864857 70865102 -111550140 - L1M2 LINE L1 -559 5732 5481 2311 80 0 19 chr6 70865103 70865415 -111549827 - AluSc SINE Alu -3 306 1 434 111 42 0 chr6 70865415 70865487 -111549755 - L1PA7 LINE L1 -4 6150 6076 1503 39 0 39 chr6 70865487 70865691 -111549551 + L1PA7 LINE L1 5858 6053 -101 * 1575 160 86 49 chr6 70865689 70866225 -111549017 - L1M2 LINE L1 -745 5401 4951 2490 176 37 13 chr6 70866225 70866764 -111548478 + L1MA9 LINE L1 5759 6310 -2 1932 146 0 3 chr6 70867621 70867909 -111547333 - AluSx SINE Alu -25 287 1 875 319 27 3 chr6 70868750 70869045 -111546197 + L1MEc LINE L1 189 490 -5906 28545 117 18 22 chr6 70869268 70870294 -111544948 + L1PA7 LINE L1 705 1733 -4736 2287 83 0 0 chr6 70870294 70870594 -111544648 + AluY SINE Alu 1 300 -11 28545 117 18 22 chr6 70870594 70875256 -111539986 + L1PA7 LINE L1 1733 6453 -16 406 320 77 0 chr6 70876715 70876871 -111538371 - MIR SINE MIR -39 223 56 24 77 0 0 chr6 70877503 70877555 -111537687 + AT_rich Low_complexity Low_complexity 1 52 0 1582 208 96 16 chr6 70877665 70878092 -111537150 + MLT1C LTR MaLR 5 465 -2 213 65 0 0 chr6 70878322 70878353 -111536889 + (CA)n Simple_repeat Simple_repeat 2 32 0 1169 300 72 42 chr6 70878788 70879432 -111535810 + L2 LINE L2 2493 3162 -151 302 0 26 0 chr6 70879432 70879470 -111535772 + (TG)n Simple_repeat Simple_repeat 2 40 0 1169 300 72 42 chr6 70879470 70879622 -111535620 + L2 LINE L2 3162 3308 -5 23 0 0 0 chr6 70880845 70880868 -111534374 + AT_rich Low_complexity Low_complexity 1 23 0 190 319 157 33 chr6 70881215 70881425 -111533817 - L2 LINE L2 -219 3053 2818 1236 208 84 17 chr6 70882163 70882510 -111532732 - MER45B DNA AcHobo -2 1038 669 248 266 78 0 chr6 70882526 70882590 -111532652 - MER45B DNA AcHobo -713 327 259 868 258 4 71 chr6 70882874 70883007 -111532235 - MER58A DNA MER1_type -2196 224 112 1700 129 132 20 chr6 70883007 70883310 -111531932 + MER1B DNA MER1_type 1 337 0 868 258 4 71 chr6 70883310 70883416 -111531826 - MER58A DNA MER1_type -2308 112 1 203 176 0 0 chr6 70884241 70884275 -111530967 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 191 184 0 82 chr6 70884287 70884336 -111530906 + L2 LINE L2 3264 3308 -5 2114 126 3 0 chr6 70884348 70884641 -111530601 + AluSp SINE Alu 1 294 -19 36 62 0 0 chr6 70885225 70885289 -111529953 + AT_rich Low_complexity Low_complexity 1 64 0 248 269 0 26 chr6 70885289 70885367 -111529875 - L1ME LINE L1 -517 5604 5529 2925 165 30 2 chr6 70885778 70886311 -111528931 + L1PA16 LINE L1 5610 6157 -9 854 249 121 41 chr6 70886864 70887202 -111528040 + MLT1A1 LTR MaLR 1 365 0 213 303 30 15 chr6 70888399 70888465 -111526777 - L2 LINE L2 -22 3291 3225 637 251 17 6 chr6 70888625 70888804 -111526438 + L1M4 LINE L1 4751 4931 -1215 384 338 103 26 chr6 70889159 70889605 -111525637 + LTR33 LTR ERVL 19 521 0 404 217 0 0 chr6 70895063 70895146 -111520096 + L1PB4 LINE L1 3503 3585 -2561 * 1163 15 0 0 chr6 70895137 70895269 -111519973 - L1PA4 LINE L1 -422 5733 5602 3445 29 2 0 chr6 70895270 70895685 -111519557 + L1PA4 LINE L1 5737 6152 -3 22 0 0 0 chr6 70895685 70895707 -111519535 + AT_rich Low_complexity Low_complexity 1 22 0 8953 177 16 14 chr6 70895707 70896685 -111518557 + L1PB4 LINE L1 3562 4536 -1767 2063 168 45 38 chr6 70896685 70897108 -111518134 - MSTA LTR MaLR 0 428 3 8953 177 16 14 chr6 70897108 70898870 -111516372 + L1PB4 LINE L1 4536 6302 -1 2273 56 0 3 chr6 70899013 70899320 -111515922 + AluY SINE Alu 1 306 0 953 341 107 26 chr6 70899496 70900457 -111514785 - L2 LINE L2 -5 3308 2275 370 284 0 0 chr6 70900546 70900634 -111514608 - MIR SINE MIR -172 90 3 246 321 46 69 chr6 70901477 70901608 -111513634 + L2 LINE L2 3136 3263 -9 1311 346 93 26 chr6 70901719 70902875 -111512367 + L2 LINE L2 1819 3051 -221 182 268 0 10 chr6 70904059 70904156 -111511086 + CT-rich Low_complexity Low_complexity 1 96 0 387 0 0 0 chr6 70904696 70904739 -111510503 + (TG)n Simple_repeat Simple_repeat 2 44 0 260 245 11 53 chr6 70905804 70905898 -111509344 + L2 LINE L2 2685 2774 -540 1510 193 66 20 chr6 70908156 70908504 -111506738 - MLT1A1 LTR MaLR -1 364 1 342 310 120 6 chr6 70908673 70908831 -111506411 + MIR SINE MIR 66 241 -21 226 271 149 9 chr6 70909040 70909147 -111506095 - L2 LINE L2 -10 3303 3182 3795 184 34 3 chr6 70909293 70910054 -111505188 + L1MC1 LINE L1 5534 6318 -15 260 320 77 51 chr6 70910102 70910365 -111504877 - L2 LINE L2 -226 3046 2783 1505 191 4 15 chr6 70910447 70910720 -111504522 + AluJo SINE Alu 12 281 -31 33 80 0 0 chr6 70910720 70910795 -111504447 + AT_rich Low_complexity Low_complexity 1 75 0 1913 138 21 0 chr6 70911239 70911530 -111503712 - AluSx SINE Alu -7 305 9 247 162 0 0 chr6 70911945 70911982 -111503260 + L1MCa LINE L1 553 589 -5837 21 0 0 0 chr6 70912821 70912842 -111502400 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 70913979 70914002 -111501240 + AT_rich Low_complexity Low_complexity 1 23 0 3592 232 30 37 chr6 70914238 70915357 -111499885 + L1MCa LINE L1 1 1105 -4940 2020 171 0 3 chr6 70915392 70915731 -111499511 - MER47A DNA MER2_type 0 366 29 234 302 0 0 chr6 70916657 70916710 -111498532 - L3 LINE CR1 -1119 458 406 21 57 0 0 chr6 70917630 70917665 -111497577 + AT_rich Low_complexity Low_complexity 1 35 0 406 320 36 36 chr6 70918428 70918622 -111496620 - MIR SINE MIR -2 260 67 1199 217 32 41 chr6 70920157 70920471 -111494771 - MER67D LTR ERV1 0 514 204 778 192 13 0 chr6 70920498 70920649 -111494593 - AluJb SINE Alu -1 311 159 1242 131 40 0 chr6 70920650 70920848 -111494394 - MER67D LTR ERV1 -308 206 1 286 242 81 0 chr6 70920875 70920974 -111494268 - LTR67 LTR ERVL -3 554 448 621 161 27 9 chr6 70921856 70921968 -111493274 - FRAM SINE Alu -20 156 43 405 335 73 52 chr6 70922931 70923122 -111492120 + MER91A DNA MER1_type 2 196 0 694 167 36 0 chr6 70923974 70924112 -111491130 - L1MB1 LINE L1 0 6168 6026 375 314 107 12 chr6 70924182 70924351 -111490891 + MIR SINE MIR 40 224 -38 473 236 69 21 chr6 70924526 70924670 -111490572 + L1ME1 LINE L1 5989 6139 -27 689 264 43 6 chr6 70925795 70925958 -111489284 - FAM SINE Alu -6 169 1 1843 198 5 19 chr6 70926247 70926615 -111488627 - MLT1A1 LTR MaLR -2 363 1 215 233 0 0 chr6 70926701 70926744 -111488498 - MIR SINE MIR 0 262 220 222 203 0 47 chr6 70926963 70927027 -111488215 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 1391 241 70 25 chr6 70927308 70927751 -111487491 + MLT1C LTR MaLR 5 467 0 221 358 80 15 chr6 70928054 70928191 -111487051 - L2 LINE L2 -19 3294 3149 2292 56 0 3 chr6 70928722 70929009 -111486233 + AluY SINE Alu 1 286 -25 243 0 0 0 chr6 70929012 70929039 -111486203 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 699 193 64 47 chr6 70929335 70929506 -111485736 - AluJo SINE Alu -12 300 127 2093 203 34 13 chr6 70929733 70930207 -111485035 - L1MC3 LINE L1 -1 7784 7301 491 248 10 0 chr6 70930210 70930311 -111484931 - L1MC3 LINE L1 -605 7180 7079 1863 233 39 76 chr6 70930343 70931009 -111484233 - L1M4 LINE L1 -1538 4608 3974 2244 103 0 10 chr6 70931009 70931321 -111483921 - AluSc SINE Alu 0 309 1 1863 233 39 76 chr6 70931321 70931448 -111483794 - L1M4 LINE L1 -2172 3974 3844 264 245 66 28 chr6 70931469 70931575 -111483667 - L1M4 LINE L1 -2241 3905 3796 31 68 0 0 chr6 70932854 70932913 -111482329 + AT_rich Low_complexity Low_complexity 1 59 0 189 0 0 0 chr6 70933444 70933465 -111481777 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 433 351 16 5 chr6 70934331 70934516 -111480726 - LTR16C LTR ERVL -4 487 301 1058 261 82 36 chr6 70934610 70934901 -111480341 + MLT1F LTR MaLR 166 478 -64 1981 118 0 4 chr6 70934901 70935206 -111480036 - AluSc SINE Alu 0 304 1 1058 261 82 36 chr6 70935206 70935269 -111479973 + MLT1F LTR MaLR 478 537 -5 9570 32 2 1 chr6 70935796 70936955 -111478287 - L1PA4 LINE L1 -1542 4604 3445 7446 32 0 3 chr6 70936955 70938528 -111476714 + L1PA4 LINE L1 4582 6152 -3 947 93 76 23 chr6 70938671 70938843 -111476399 + L1PA11 LINE L1 5994 6174 0 21 71 0 0 chr6 70939066 70939108 -111476134 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr6 70939324 70939354 -111475888 + AT_rich Low_complexity Low_complexity 1 30 0 1557 163 27 57 chr6 70939866 70940197 -111475045 - MLT1B LTR MaLR -2 388 68 7369 34 2 6 chr6 70940464 70941654 -111473588 + L1PA3 LINE L1 4963 6152 -3 1939 150 48 23 chr6 70941997 70942351 -111472891 - THE1B LTR MaLR -1 363 1 2001 171 3 9 chr6 70942582 70942921 -111472321 + MER1B DNA MER1_type 1 337 0 329 283 48 36 chr6 70942995 70943161 -111472081 + MLT1L LTR MaLR 440 607 -8 2156 94 3 24 chr6 70943758 70944056 -111471186 + AluSp SINE Alu 1 292 -21 442 120 40 0 chr6 70944185 70944260 -111470982 + MADE1 DNA Mariner 3 80 0 2256 133 8 19 chr6 70944502 70944870 -111470372 + THE1B LTR MaLR 1 364 0 321 332 77 32 chr6 70945039 70945259 -111469983 + MLT1K LTR MaLR 335 564 -24 199 290 14 72 chr6 70946486 70946624 -111468618 + MIR SINE MIR 76 205 -57 2360 65 3 10 chr6 70947446 70947753 -111467489 + AluY SINE Alu 1 305 -6 254 259 120 9 chr6 70948492 70948600 -111466642 + L1ME4a LINE L1 5998 6117 -4 373 339 94 51 chr6 70949085 70949436 -111465806 - MLT1G LTR MaLR -224 366 1 891 220 80 110 chr6 70949504 70950095 -111465147 + L1MC4 LINE L1 7465 8037 -5 1893 137 0 10 chr6 70950267 70950560 -111464682 - AluSg SINE Alu -20 290 1 706 315 112 52 chr6 70950684 70951852 -111463390 + L1M4 LINE L1 2541 3778 -2368 1007 135 6 6 chr6 70952459 70952622 -111462620 + AluSc SINE Alu 135 297 -12 1399 239 83 52 chr6 70953055 70953512 -111461730 + MLT1E3 LTR MaLR 153 623 -1 180 152 0 0 chr6 70953676 70953709 -111461533 + (TG)n Simple_repeat Simple_repeat 1 33 0 1357 209 113 21 chr6 70953752 70954178 -111461064 + MLT1C LTR MaLR 3 467 0 251 232 0 0 chr6 70954268 70954324 -111460918 + MER116 DNA Mariner 19 74 -6 1700 187 17 0 chr6 70954375 70954669 -111460573 - AluJb SINE Alu -13 299 1 29 0 0 0 chr6 70956215 70956244 -111458998 + AT_rich Low_complexity Low_complexity 1 29 0 221 319 78 54 chr6 70956867 70957033 -111458209 - L2 LINE L2 -7 3306 3137 750 292 59 67 chr6 70957251 70957607 -111457635 - LTR16C LTR ERVL -3 488 136 14452 54 2 1 chr6 70957764 70959604 -111455638 - L1PA4 LINE L1 -3601 2545 705 22658 41 6 0 chr6 70959604 70963195 -111452047 + L1PA4 LINE L1 2550 6149 -6 429 245 27 20 chr6 70963261 70963408 -111451834 + LTR37B LTR ERV1 199 346 -122 400 326 22 14 chr6 70963544 70963682 -111451560 - MIR SINE MIR -96 166 28 502 272 19 31 chr6 70964206 70964368 -111450874 - MLT1I LTR MaLR -3 406 247 4744 124 4 8 chr6 70964539 70965278 -111449964 - LTR17 LTR ERV1 0 780 1 1568 199 16 58 chr6 70965337 70965718 -111449524 + MLT1A1 LTR MaLR 1 365 0 1900 123 12 22 chr6 70966739 70967063 -111448179 + L1PA14 LINE L1 5840 6160 -1 272 353 113 31 chr6 70967071 70967620 -111447622 + L2 LINE L2 1793 2386 -928 54 0 0 0 chr6 70967966 70968020 -111447222 + AT_rich Low_complexity Low_complexity 1 54 0 26 0 0 0 chr6 70968058 70968084 -111447158 + AT_rich Low_complexity Low_complexity 1 26 0 659 266 34 17 chr6 70968719 70968896 -111446346 - MER5A DNA MER1_type -7 182 3 2277 77 0 55 chr6 70969344 70969670 -111445572 - AluY SINE Alu -3 308 1 224 279 0 0 chr6 70970163 70970224 -111445018 + GA-rich Low_complexity Low_complexity 2 62 0 1421 202 110 48 chr6 70970673 70971191 -111444051 + MER67C LTR ERV1 1 514 0 405 39 0 0 chr6 70971206 70971257 -111443985 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2020 156 17 6 chr6 70971979 70972338 -111442904 + MLT1A1 LTR MaLR 1 363 -2 456 172 0 0 chr6 70975533 70975620 -111439622 + (CA)n Simple_repeat Simple_repeat 2 88 0 199 324 178 29 chr6 70975751 70976201 -111439041 + L2 LINE L2 2229 2745 -569 2172 110 7 7 chr6 70976222 70976531 -111438711 - AluSx SINE Alu -3 309 1 304 277 54 9 chr6 70976607 70976719 -111438523 + MIR SINE MIR 74 190 -72 317 109 16 0 chr6 70976958 70977022 -111438220 + (TA)n Simple_repeat Simple_repeat 1 65 0 248 111 22 0 chr6 70977021 70977066 -111438176 + GA-rich Low_complexity Low_complexity 2 47 0 * 225 267 0 20 chr6 70977167 70977268 -111437974 - L1MC4 LINE L1 -11 8031 7933 1814 142 51 45 chr6 70977281 70977633 -111437609 - MLT1A1 LTR MaLR 0 365 12 309 326 104 26 chr6 70978170 70978440 -111436802 - L1MC4 LINE L1 -615 7427 7137 404 232 20 0 chr6 70978734 70978833 -111436409 - L1MC4 LINE L1 -1031 7011 6911 2137 117 0 0 chr6 70978966 70979265 -111435977 + AluSx SINE Alu 2 300 -12 1930 121 14 7 chr6 70979378 70979667 -111435575 + AluSx SINE Alu 7 297 -15 892 316 73 23 chr6 70979917 70980535 -111434707 - L1MC4 LINE L1 -1850 5958 5310 1807 281 60 34 chr6 70980908 70981789 -111433453 + L1M4b LINE L1 2 973 -5886 456 214 36 9 chr6 70981832 70981944 -111433298 + L1M4b LINE L1 947 1061 -5886 308 302 0 0 chr6 70982170 70982256 -111432986 + MER50 LTR ERV1 9 94 -640 508 112 0 22 chr6 70982281 70982370 -111432872 + AluY SINE Alu 1 87 -223 498 250 119 67 chr6 70982376 70982720 -111432522 - LTR15 LTR ERV1 -24 469 108 1665 74 0 18 chr6 70982822 70983068 -111432174 + AluY SINE Alu 71 312 0 1601 224 98 16 chr6 70983177 70983628 -111431614 + MER50 LTR ERV1 240 727 -7 646 287 115 41 chr6 70983712 70984396 -111430846 + L1M4b LINE L1 1321 1983 -4976 491 206 72 93 chr6 70984416 70984763 -111430479 + LTR46 LTR ERV1 1 460 0 873 253 93 99 chr6 70984775 70985922 -111429320 + L1M4b LINE L1 2177 3273 -3684 1909 170 102 5 chr6 70986032 70986414 -111428828 + MSTB1 LTR MaLR 1 419 -13 1719 272 122 20 chr6 70986504 70987133 -111428109 + L1M4b LINE L1 3486 4050 -2907 2093 87 0 4 chr6 70987133 70987410 -111427832 + AluY SINE Alu 5 280 -31 1032 150 0 0 chr6 70987413 70987631 -111427611 + (TA)n Simple_repeat Simple_repeat 1 218 0 1719 272 122 20 chr6 70987631 70988003 -111427239 + L1M4b LINE L1 4051 4599 -2358 10969 61 1 3 chr6 70988062 70989509 -111425733 - L1PA5 LINE L1 -2167 3979 2536 11188 43 1 2 chr6 70989509 70991657 -111423585 + L1PA5 LINE L1 4009 6150 -4 622 253 33 44 chr6 70991699 70991972 -111423270 + L1M4b LINE L1 4686 4955 -2002 4815 189 31 26 chr6 70992179 70993739 -111421503 - L1PA16 LINE L1 -9 6157 4591 1252 273 105 34 chr6 70993760 70994560 -111420682 + L1M4b LINE L1 5226 6082 -875 895 327 47 67 chr6 70994824 70995568 -111419674 + L1PB1 LINE L1 2 730 -6119 421 284 26 52 chr6 70995789 70996021 -111419221 + L1PB1 LINE L1 1333 1558 -5291 4049 242 57 20 chr6 70996071 70996241 -111419001 + L1PB1 LINE L1 1381 1543 -5306 1818 93 0 12 chr6 70996241 70996488 -111418754 - AluSg/x SINE Alu -3 309 66 4049 242 57 20 chr6 70996488 70998330 -111416912 + L1PB1 LINE L1 1543 3512 -3337 2179 129 0 0 chr6 70998330 70998639 -111416603 + AluSc SINE Alu 1 309 0 4049 242 57 20 chr6 70998639 70999151 -111416091 + L1PB1 LINE L1 3512 4004 -2845 * 5903 125 18 2 chr6 70999128 71000154 -111415088 + L1PA14 LINE L1 5820 6857 -7 7314 219 36 30 chr6 71000161 71002138 -111413104 + L1 LINE L1 3992 5980 -869 455 84 56 0 chr6 71002123 71002194 -111413048 + L1PB4 LINE L1 5644 5718 -438 * 1424 175 68 0 chr6 71002223 71002515 -111412727 + L1PB4 LINE L1 5844 6155 -1 245 319 58 0 chr6 71003381 71003450 -111411792 - L2 LINE L2 0 3272 3200 559 209 21 99 chr6 71003698 71003889 -111411353 - LTR40a LTR ERVL -2 517 342 387 73 0 0 chr6 71004025 71004080 -111411162 + (CA)n Simple_repeat Simple_repeat 2 56 0 180 0 0 0 chr6 71004079 71004099 -111411143 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 1248 99 0 17 chr6 71004099 71004271 -111410971 - AluSg/x SINE Alu -13 299 131 245 106 0 21 chr6 71004964 71005011 -111410231 + (TA)n Simple_repeat Simple_repeat 1 46 0 277 81 24 73 chr6 71005098 71005221 -111410021 + (TATAA)n Simple_repeat Simple_repeat 1 117 0 5605 169 19 41 chr6 71005506 71006220 -111409022 + L1PB1 LINE L1 4703 5431 -1423 3601 18 5 18 chr6 71006220 71006663 -111408579 + L1PA3 LINE L1 5717 6153 -2 5605 169 19 41 chr6 71006663 71007772 -111407470 + L1PB1 LINE L1 5431 6563 -291 231 36 0 0 chr6 71007772 71007800 -111407442 + (CA)n Simple_repeat Simple_repeat 1 28 0 5605 169 19 41 chr6 71007800 71008056 -111407186 + L1PB1 LINE L1 6563 6732 -122 2278 61 20 0 chr6 71008056 71008351 -111406891 + AluY SINE Alu 1 301 -10 5605 169 19 41 chr6 71008351 71008472 -111406770 + L1PB1 LINE L1 6732 6854 0 1198 245 59 56 chr6 71009158 71009619 -111405623 + LTR40b LTR ERVL 1 462 0 222 118 0 0 chr6 71009672 71009706 -111405536 + (CA)n Simple_repeat Simple_repeat 1 34 0 29 0 0 0 chr6 71010142 71010171 -111405071 + AT_rich Low_complexity Low_complexity 1 29 0 246 331 52 10 chr6 71010806 71010913 -111404329 - MIR SINE MIR -63 145 38 2426 106 53 3 chr6 71010992 71011371 -111403871 + MER51C LTR ERV1 243 640 0 2128 178 70 3 chr6 71012445 71012833 -111402409 - LTR28 LTR ERV1 -606 414 1 202 373 102 17 chr6 71014750 71014927 -111400315 - L2 LINE L2 -693 2621 2430 2567 51 0 3 chr6 71015182 71015494 -111399748 - AluY SINE Alu 0 311 1 17785 118 34 5 chr6 71015687 71018288 -111396954 - Charlie3 DNA MER1_type -4 2706 31 266 280 140 13 chr6 71019341 71019491 -111395751 + MIR SINE MIR 90 258 -4 1756 256 149 13 chr6 71019491 71020035 -111395207 + MLT1E2 LTR MaLR 1 618 -8 1625 148 16 0 chr6 71020326 71020582 -111394660 + AluSx SINE Alu 36 295 -17 2355 197 6 29 chr6 71020637 71021154 -111394088 - MLT1D LTR MaLR 0 505 1 198 192 0 0 chr6 71021442 71021494 -111393748 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 606 254 55 125 chr6 71021714 71022131 -111393111 - L2 LINE L2 -5 3308 2921 219 306 176 0 chr6 71022158 71022266 -111392976 - L2 LINE L2 0 3313 3187 274 296 28 63 chr6 71023727 71023869 -111391373 - MIR SINE MIR -124 138 2 184 320 93 33 chr6 71026300 71026450 -111388792 + L2 LINE L2 2372 2530 -784 182 287 149 0 chr6 71026982 71027069 -111388173 + L2 LINE L2 3209 3308 -5 22 0 0 0 chr6 71027442 71027464 -111387778 + AT_rich Low_complexity Low_complexity 1 22 0 1801 211 92 104 chr6 71028694 71028992 -111386250 - LTR1B LTR ERV1 -17 1003 703 2282 106 0 3 chr6 71028992 71029303 -111385939 - AluY SINE Alu -1 310 1 1801 211 92 104 chr6 71029303 71029940 -111385302 - LTR1B LTR ERV1 -317 703 1 285 308 77 23 chr6 71029961 71030091 -111385151 + MLT1I LTR MaLR 13 149 -260 438 150 0 12 chr6 71030320 71030400 -111384842 - MADE1 DNA Mariner -1 79 1 2155 100 3 3 chr6 71031153 71031443 -111383799 - AluSc SINE Alu -18 291 2 6740 68 8 0 chr6 71031755 71032989 -111382253 + L1PA7 LINE L1 4949 6154 0 188 0 0 69 chr6 71033207 71033236 -111382006 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 578 295 139 12 chr6 71033385 71033636 -111381606 - MER102b DNA MER1_type -9 332 50 21 0 0 0 chr6 71034628 71034649 -111380593 + AT_rich Low_complexity Low_complexity 1 21 0 397 139 63 0 chr6 71037187 71037266 -111377976 - L1PA16 LINE L1 -3 6163 6080 22 0 0 0 chr6 71037636 71037658 -111377584 + AT_rich Low_complexity Low_complexity 1 22 0 2241 92 0 0 chr6 71037997 71038290 -111376952 - AluY SINE Alu -18 293 1 194 233 158 62 chr6 71039657 71039803 -111375439 - L2 LINE L2 -38 3275 3116 898 216 73 82 chr6 71040451 71040766 -111374476 + MER45B DNA AcHobo 66 389 -651 788 252 112 25 chr6 71040872 71041114 -111374128 - MSTD LTR MaLR -111 285 23 678 184 25 19 chr6 71041716 71041874 -111373368 + L1MB5 LINE L1 6008 6166 -8 707 268 4 40 chr6 71044523 71044751 -111370491 - L1MA10 LINE L1 -7 6327 6108 8392 159 34 9 chr6 71044792 71046267 -111368975 + Tigger1 DNA MER2_type 77 1588 -830 2470 57 10 0 chr6 71046267 71046564 -111368678 + AluY SINE Alu 1 300 -11 1056 238 72 34 chr6 71048158 71048235 -111367007 - MER45B DNA AcHobo -563 1018 945 1969 126 36 0 chr6 71048235 71048513 -111366729 + AluSq SINE Alu 4 291 -22 1056 238 72 34 chr6 71048513 71048744 -111366498 - MER45B DNA AcHobo -636 945 693 1823 217 45 31 chr6 71048744 71049164 -111366078 - MSTB LTR MaLR 0 426 1 1056 238 72 34 chr6 71049164 71049203 -111366039 - MER45B DNA AcHobo -888 693 657 521 194 0 0 chr6 71049304 71049397 -111365845 - MSTA LTR MaLR -335 93 1 8553 189 22 12 chr6 71049397 71051031 -111364211 - MSTB-int LTR MaLR 0 1651 1 1795 181 60 48 chr6 71051031 71051450 -111363792 - MSTB LTR MaLR -2 424 1 4631 244 22 49 chr6 71051450 71052571 -111362671 - L1PA13 LINE L1 -2573 4224 3152 312 91 0 0 chr6 71052571 71052615 -111362627 + (TG)n Simple_repeat Simple_repeat 2 45 0 4631 244 22 49 chr6 71052615 71053011 -111362231 - L1PA13 LINE L1 -3645 3152 2747 2556 299 41 43 chr6 71053043 71054084 -111361158 - L1PA13 LINE L1 -5309 1478 1 1018 139 0 12 chr6 71054100 71054266 -111360976 - Tigger2 DNA MER2_type -285 2433 2270 330 231 15 0 chr6 71054253 71054318 -111360924 - Tigger2 DNA MER2_type -2649 69 4 * 1507 259 167 31 chr6 71054419 71055223 -111360019 + L1MC4 LINE L1 6640 7552 -490 286 91 106 45 chr6 71055226 71055292 -111359950 - L1MA9 LINE L1 -161 6151 6082 517 200 25 175 chr6 71055299 71055614 -111359628 + L1MC4 LINE L1 7775 8042 0 1410 234 83 122 chr6 71055644 71056836 -111358406 + L1MD3 LINE L1 5437 6582 -1413 2341 92 0 0 chr6 71056843 71057138 -111358104 - AluY SINE Alu -16 295 1 833 180 0 0 chr6 71058030 71058180 -111357062 - AluSg/x SINE Alu 0 312 163 330 293 52 17 chr6 71059344 71059460 -111355782 + MIR SINE MIR 107 226 -36 204 143 0 24 chr6 71060283 71060325 -111354917 + (CAAAAA)n Simple_repeat Simple_repeat 5 45 0 1079 186 96 48 chr6 71060572 71060948 -111354294 - L1MB8 LINE L1 -4 6410 2089 56 61 0 0 chr6 71061014 71061112 -111354130 + AT_rich Low_complexity Low_complexity 1 98 0 541 262 12 12 chr6 71061118 71061286 -111353956 - L1MB8 LINE L1 -4550 1834 1667 2369 133 3 24 chr6 71061698 71062081 -111353161 + THE1C LTR MaLR 1 375 0 9789 119 39 39 chr6 71062081 71063656 -111351586 + THE1C-int LTR MaLR 1 1574 -6 2566 103 19 5 chr6 71063661 71064031 -111351211 + THE1C LTR MaLR 1 375 0 487 360 24 5 chr6 71064169 71064380 -111350862 - MIR SINE MIR -34 228 14 21 36 0 0 chr6 71064576 71064604 -111350638 + AT_rich Low_complexity Low_complexity 1 28 0 228 130 43 0 chr6 71065067 71065113 -111350129 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 2540 169 11 26 chr6 71065150 71065617 -111349625 + MLT1C LTR MaLR 8 467 0 1098 278 141 29 chr6 71065728 71066210 -111349032 - MER90 LTR ERV1 -10 604 69 22 35 0 0 chr6 71066378 71066407 -111348835 + AT_rich Low_complexity Low_complexity 1 29 0 857 148 0 0 chr6 71067567 71067689 -111347553 - AluSq/x SINE Alu -187 125 4 1975 135 0 38 chr6 71067700 71068019 -111347223 - AluSc SINE Alu 0 309 3 1415 213 149 37 chr6 71068563 71068991 -111346251 - MLT1D LTR MaLR -2 503 28 228 157 45 112 chr6 71069020 71069109 -111346133 + HsTC2 DNA Tc2 1816 1898 0 1522 259 78 29 chr6 71069348 71069896 -111345346 - MLT1E1 LTR MaLR 0 654 80 1152 227 60 11 chr6 71069911 71070180 -111345062 - AluJb SINE Alu -30 282 1 444 238 12 0 chr6 71070181 71070265 -111344977 - MLT1E1 LTR MaLR -565 89 5 277 261 0 0 chr6 71070367 71070432 -111344810 + L2 LINE L2 3204 3268 -4 180 77 0 0 chr6 71070937 71070963 -111344279 + (T)n Simple_repeat Simple_repeat 1 26 0 2678 55 0 0 chr6 71071806 71072132 -111343110 - LTR17 LTR ERV1 -454 326 1 2290 79 0 0 chr6 71072132 71072424 -111342818 - HERV17 LTR ERV1 0 8626 8335 290 77 0 0 chr6 71072414 71072453 -111342789 - HERV17 LTR ERV1 -1078 7548 7510 * 40662 52 20 7 chr6 71072443 71078279 -111336963 - HERV17 LTR ERV1 -2604 6022 1 3800 74 44 0 chr6 71078279 71078782 -111336460 - LTR17 LTR ERV1 0 780 256 8769 50 3 0 chr6 71080003 71081071 -111334171 - MER11C LTR ERVK 0 1071 1 23 0 0 0 chr6 71081948 71081971 -111333271 + AT_rich Low_complexity Low_complexity 1 23 0 3747 181 61 14 chr6 71082078 71082867 -111332375 + LTR1B LTR ERV1 1 826 0 1901 137 10 20 chr6 71082984 71083283 -111331959 - AluSx SINE Alu -16 296 1 3380 127 55 102 chr6 71083500 71084324 -111330918 - LTR1 LTR ERV1 0 785 1 21 0 0 0 chr6 71084521 71084542 -111330700 + AT_rich Low_complexity Low_complexity 1 21 0 341 228 114 24 chr6 71087204 71087327 -111327915 + MLT1L LTR MaLR 139 272 -343 2286 231 32 49 chr6 71088294 71088909 -111326333 - MER77 LTR ERV1 0 605 1 27 0 0 0 chr6 71089840 71089867 -111325375 + AT_rich Low_complexity Low_complexity 1 27 0 3126 101 48 4 chr6 71090037 71090514 -111324728 - L1PA4 LINE L1 -1 6154 5657 569 15 0 0 chr6 71090514 71090580 -111324662 + L1P1 LINE L1 5721 5786 -369 21 57 0 0 chr6 71091330 71091365 -111323877 + AT_rich Low_complexity Low_complexity 1 35 0 369 43 0 0 chr6 71093930 71093977 -111321265 + (TG)n Simple_repeat Simple_repeat 1 47 0 253 184 85 0 chr6 71093978 71094119 -111321123 + (TA)n Simple_repeat Simple_repeat 1 153 0 209 56 37 37 chr6 71094135 71094189 -111321053 + (TTTAA)n Simple_repeat Simple_repeat 3 56 0 209 175 70 0 chr6 71094210 71094267 -111320975 + (TATAA)n Simple_repeat Simple_repeat 4 64 0 237 83 0 0 chr6 71094275 71094311 -111320931 + (TA)n Simple_repeat Simple_repeat 2 37 0 234 62 0 0 chr6 71094347 71094379 -111320863 + (TA)n Simple_repeat Simple_repeat 2 33 0 384 325 16 8 chr6 71094551 71094677 -111320565 + MIR SINE MIR 64 190 -72 183 325 26 105 chr6 71095076 71095190 -111320052 + L2 LINE L2 3147 3251 -21 254 194 16 0 chr6 71095202 71095264 -111319978 + GA-rich Low_complexity Low_complexity 2 64 0 23 86 0 0 chr6 71095789 71095847 -111319395 + AT_rich Low_complexity Low_complexity 1 58 0 248 405 6 18 chr6 71096263 71096431 -111318811 - MER5B DNA MER1_type 0 178 13 336 171 125 11 chr6 71098031 71098119 -111317123 + MER53 DNA DNA 92 189 0 27 49 0 0 chr6 71099231 71099272 -111315970 + AT_rich Low_complexity Low_complexity 1 41 0 399 271 94 67 chr6 71099575 71099830 -111315412 + Charlie8 DNA MER1_type 19 280 -2137 21 82 0 0 chr6 71100194 71100243 -111314999 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr6 71101056 71101078 -111314164 + AT_rich Low_complexity Low_complexity 1 22 0 540 274 101 34 chr6 71101209 71101683 -111313559 - Charlie7 DNA MER1_type -6 2606 2101 361 300 13 60 chr6 71102086 71102236 -111313006 + MIR SINE MIR 13 155 -107 447 368 49 20 chr6 71102270 71102517 -111312725 - L2 LINE L2 -385 2929 2676 198 363 53 9 chr6 71102559 71102672 -111312570 + L2 LINE L2 3196 3313 0 628 158 20 0 chr6 71104524 71104625 -111310617 - Tigger1 DNA MER2_type 0 2418 2316 * 11614 151 11 28 chr6 71104621 71106587 -111308655 - Tigger1 DNA MER2_type -367 2051 120 1958 163 0 0 chr6 71106587 71106881 -111308361 + AluSx SINE Alu 7 300 -12 11614 151 11 28 chr6 71106881 71106971 -111308271 - Tigger1 DNA MER2_type -2298 120 30 1429 225 46 17 chr6 71107073 71107424 -111307818 + MLT1A1 LTR MaLR 1 361 -4 21 71 0 0 chr6 71108436 71108478 -111306764 + AT_rich Low_complexity Low_complexity 1 42 0 414 304 40 14 chr6 71109278 71109426 -111305816 - MER5A DNA MER1_type -35 154 3 263 290 90 20 chr6 71110433 71110533 -111304709 + L2 LINE L2 3165 3271 -1 28 0 0 0 chr6 71110716 71110744 -111304498 + AT_rich Low_complexity Low_complexity 1 28 0 13848 158 41 31 chr6 71110957 71113277 -111301965 - Tigger2 DNA MER2_type -10 2708 356 530 288 0 0 chr6 71113277 71113409 -111301833 + FLAM_A SINE Alu 1 132 -1 13848 158 41 31 chr6 71113409 71113769 -111301473 - Tigger2 DNA MER2_type -2362 356 1 320 361 85 19 chr6 71114334 71114594 -111300648 - HERV16 LTR ERVL -4682 314 38 584 324 65 25 chr6 71114764 71115042 -111300200 - LTR16A LTR ERVL -146 304 16 241 306 113 32 chr6 71115746 71115870 -111299372 - L2 LINE L2 -2 3270 3137 2166 104 24 0 chr6 71116156 71116445 -111298797 + AluSx SINE Alu 1 296 -16 231 360 90 24 chr6 71116488 71116699 -111298543 - L2 LINE L2 -525 2789 2565 1116 211 58 72 chr6 71116857 71117217 -111298025 + MLT1D LTR MaLR 4 358 -147 279 93 0 0 chr6 71117782 71117825 -111297417 + (CA)n Simple_repeat Simple_repeat 2 44 0 24 77 0 0 chr6 71118344 71118396 -111296846 + AT_rich Low_complexity Low_complexity 1 52 0 187 368 35 23 chr6 71118509 71118596 -111296646 + L2 LINE L2 3213 3300 -13 1977 147 3 3 chr6 71118725 71119024 -111296218 - AluSx SINE Alu -13 299 1 21 36 0 0 chr6 71119363 71119391 -111295851 + AT_rich Low_complexity Low_complexity 1 28 0 1400 173 3 61 chr6 71121026 71121321 -111293921 - AluJo SINE Alu -30 282 5 216 188 0 21 chr6 71121392 71121440 -111293802 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 216 187 27 13 chr6 71122253 71122328 -111292914 + (TA)n Simple_repeat Simple_repeat 2 77 0 23 33 0 0 chr6 71122397 71122427 -111292815 + AT_rich Low_complexity Low_complexity 1 30 0 3952 114 8 11 chr6 71122514 71123128 -111292114 + L1PA13 LINE L1 5549 6160 -3 216 0 0 0 chr6 71123874 71123898 -111291344 + (A)n Simple_repeat Simple_repeat 1 24 0 2454 34 40 0 chr6 71125010 71125308 -111289934 - AluY SINE Alu -1 310 1 998 169 0 6 chr6 71125364 71125541 -111289701 - AluSg/x SINE Alu -2 307 132 315 209 47 23 chr6 71125551 71125680 -111289562 + (TA)n Simple_repeat Simple_repeat 1 132 0 6729 132 19 17 chr6 71126023 71127764 -111287478 - L1MA2 LINE L1 0 7723 5977 538 267 25 25 chr6 71127764 71127925 -111287317 - MER61D LTR ERV1 -3 498 338 1035 174 23 38 chr6 71128374 71128561 -111286681 - L1MA2 LINE L1 -1583 5982 5799 1884 141 0 49 chr6 71128561 71128887 -111286355 - AluSx SINE Alu -2 310 1 1035 174 23 38 chr6 71128887 71128964 -111286278 - L1MA2 LINE L1 -1766 5799 5722 539 188 17 17 chr6 71128956 71129073 -111286169 - L1MA2 LINE L1 -7432 133 17 * 243 307 74 74 chr6 71130836 71131012 -111284230 - L2 LINE L2 -27 3286 3111 267 370 0 10 chr6 71131399 71131499 -111283743 - MIR SINE MIR -151 111 13 629 303 95 17 chr6 71131508 71132036 -111283206 - L1MEc LINE L1 -4722 1674 1106 22 0 0 0 chr6 71132044 71132066 -111283176 + AT_rich Low_complexity Low_complexity 1 22 0 438 69 0 0 chr6 71132939 71132997 -111282245 + (TA)n Simple_repeat Simple_repeat 2 59 0 301 271 78 31 chr6 71133060 71133189 -111282053 - L1M4 LINE L1 -2131 4015 3881 251 303 18 0 chr6 71133333 71133442 -111281800 - L1P LINE L1 -2433 3713 3603 1919 224 107 72 chr6 71134013 71134639 -111280603 + MLT1E1 LTR MaLR 7 654 0 218 186 23 54 chr6 71135104 71135233 -111280009 + (TTATA)n Simple_repeat Simple_repeat 4 128 0 78 30 0 0 chr6 71135248 71135347 -111279895 + AT_rich Low_complexity Low_complexity 1 99 0 30 0 0 0 chr6 71135567 71135597 -111279645 + AT_rich Low_complexity Low_complexity 1 30 0 1000 227 45 10 chr6 71136797 71137110 -111278132 - MER33 DNA MER1_type 0 324 1 22 0 0 0 chr6 71137404 71137426 -111277816 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr6 71138382 71138426 -111276816 + AT_rich Low_complexity Low_complexity 1 44 0 381 172 112 3 chr6 71138497 71138629 -111276613 - L1 LINE L1 -791 5355 5211 180 0 0 0 chr6 71138629 71138649 -111276593 + (T)n Simple_repeat Simple_repeat 1 20 0 2085 193 29 68 chr6 71138650 71139278 -111275964 - LTR5 LTR ERVK -90 879 277 7068 234 48 29 chr6 71139326 71140140 -111275102 - L1P LINE L1 -923 5223 4427 203 61 30 0 chr6 71140140 71140173 -111275069 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7068 234 48 29 chr6 71140173 71141502 -111273740 - L1P LINE L1 -1719 4427 3037 4874 145 9 3 chr6 71141525 71142305 -111272937 + L1PA16 LINE L1 5364 6148 -18 2053 131 3 0 chr6 71142384 71142675 -111272567 - AluSx SINE Alu -20 292 1 1788 243 32 26 chr6 71143468 71143975 -111271267 - MER90 LTR ERV1 -12 602 93 219 69 0 0 chr6 71144080 71144109 -111271133 + (TG)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr6 71144208 71144230 -111271012 + AT_rich Low_complexity Low_complexity 1 22 0 388 132 15 0 chr6 71144754 71144822 -111270420 - L1MB7 LINE L1 -6 6676 6608 1495 146 65 60 chr6 71144823 71144919 -111270323 - MER44D DNA MER2_type -1882 609 515 1427 191 62 36 chr6 71144919 71145275 -111269967 - MER47A DNA MER2_type 0 366 2 1495 146 65 60 chr6 71145275 71145414 -111269828 - MER44D DNA MER2_type -1976 515 378 198 0 0 0 chr6 71145414 71145436 -111269806 + (TC)n Simple_repeat Simple_repeat 1 22 0 1495 146 65 60 chr6 71145436 71145535 -111269707 - MER44D DNA MER2_type -2113 378 2 3706 259 93 22 chr6 71145540 71148345 -111266897 - L1MB7 LINE L1 -79 6603 3593 1492 271 74 30 chr6 71148315 71149616 -111265626 - L1MB7 LINE L1 -3856 2788 1345 * 6369 173 33 27 chr6 71149627 71151817 -111263425 - L1PA7 LINE L1 -2 6650 16 216 338 81 38 chr6 71151893 71152053 -111263189 + MIR SINE MIR 25 191 -71 189 0 0 0 chr6 71153291 71153312 -111261930 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr6 71153537 71153572 -111261670 + AT_rich Low_complexity Low_complexity 1 35 0 281 275 56 23 chr6 71153582 71153724 -111261518 - L1MC/D LINE L1 -456 5665 5544 233 401 19 13 chr6 71153768 71153925 -111261317 - MIR SINE MIR -71 191 34 394 245 38 0 chr6 71154244 71154350 -111260892 + L1MEc LINE L1 1926 2035 -4361 922 207 53 57 chr6 71154472 71154771 -111260471 - MLT1C LTR MaLR -163 304 7 24 32 0 0 chr6 71155031 71155062 -111260180 + AT_rich Low_complexity Low_complexity 1 31 0 635 237 0 26 chr6 71155666 71155822 -111259420 - L1ME2 LINE L1 -22 6142 5991 1077 299 46 60 chr6 71156978 71157590 -111257652 + L1PA15-16 LINE L1 2 604 -6245 570 267 63 108 chr6 71157857 71158393 -111256849 + L1M2 LINE L1 818 1376 -5473 2550 103 3 11 chr6 71158393 71158751 -111256491 + THE1A LTR MaLR 1 355 0 11563 89 9 1 chr6 71158751 71160318 -111254924 + THE1A-int LTR MaLR 1 1580 0 2529 111 6 0 chr6 71160318 71160671 -111254571 + THE1A LTR MaLR 1 355 0 570 267 63 108 chr6 71160671 71160820 -111254422 + L1M2 LINE L1 1373 1674 -5175 303 257 0 0 chr6 71161065 71161139 -111254103 + L1PA12 LINE L1 7 80 -7501 21 0 0 0 chr6 71162291 71162312 -111252930 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 71162440 71162467 -111252775 + AT_rich Low_complexity Low_complexity 1 27 0 225 108 0 0 chr6 71164340 71164377 -111250865 + (A)n Simple_repeat Simple_repeat 1 37 0 1532 106 9 9 chr6 71164388 71164615 -111250627 + AluSg/x SINE Alu 85 311 -1 260 360 92 19 chr6 71164991 71165252 -111249990 + L2 LINE L2 2380 2659 -655 222 37 0 0 chr6 71165301 71165328 -111249914 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1538 182 39 6 chr6 71165938 71166268 -111248974 - L1MA8 LINE L1 -3 6288 5948 2184 99 0 3 chr6 71166506 71166800 -111248442 - AluSc SINE Alu -11 298 6 309 304 72 43 chr6 71167850 71168038 -111247204 + MIR SINE MIR 16 201 -61 200 302 48 0 chr6 71168217 71168280 -111246962 - MIR SINE MIR -36 226 161 257 290 54 0 chr6 71168673 71168766 -111246476 + MER94 DNA DNA 34 131 -3 231 208 21 0 chr6 71169241 71169289 -111245953 + CT-rich Low_complexity Low_complexity 3 51 0 3198 185 13 2 chr6 71169917 71170522 -111244720 + L1PA16 LINE L1 5554 6165 -1 22 0 0 0 chr6 71171005 71171027 -111244215 + AT_rich Low_complexity Low_complexity 1 22 0 366 301 14 14 chr6 71171814 71171957 -111243285 + MLT1K LTR MaLR 446 588 0 23 0 0 0 chr6 71172945 71172968 -111242274 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr6 71173970 71174025 -111241217 + AT_rich Low_complexity Low_complexity 1 55 0 314 372 83 0 chr6 71174556 71174712 -111240530 - L2 LINE L2 0 3272 3104 4927 171 94 8 chr6 71174720 71175660 -111239582 + LTR28 LTR ERV1 1 1020 0 424 272 108 75 chr6 71175699 71175967 -111239275 + LTR16C LTR ERVL 215 491 0 1456 202 27 17 chr6 71176424 71176716 -111238526 + AluJo SINE Alu 1 295 -17 44 84 0 0 chr6 71177576 71177683 -111237559 + AT_rich Low_complexity Low_complexity 1 107 0 21 36 0 0 chr6 71177831 71177859 -111237383 + AT_rich Low_complexity Low_complexity 1 28 0 631 214 26 0 chr6 71178543 71178660 -111236582 - Tigger3(Golem) DNA MER2_type 0 3038 2919 363 225 11 45 chr6 71178660 71178749 -111236493 - Tigger3(Golem) DNA MER2_type -2943 86 1 561 303 70 3 chr6 71179535 71179878 -111235364 - L1MEc LINE L1 -3913 2483 2118 26 50 0 0 chr6 71180620 71180660 -111234582 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr6 71181673 71181694 -111233548 + AT_rich Low_complexity Low_complexity 1 21 0 269 329 88 12 chr6 71181956 71182210 -111233032 - L1ME LINE L1 -291 5879 5607 304 307 60 36 chr6 71182291 71182457 -111232785 - L1ME LINE L1 -676 5494 5325 198 0 0 0 chr6 71182457 71182479 -111232763 + (TA)n Simple_repeat Simple_repeat 1 22 0 8329 89 3 13 chr6 71182480 71184406 -111230836 - L1PA7 LINE L1 -108 6361 4458 * 13057 125 7 36 chr6 71184381 71187633 -111227609 - L1PA7 LINE L1 -3224 3237 9 416 319 99 60 chr6 71187659 71188404 -111226838 - L1ME LINE L1 -844 5302 4529 543 280 49 31 chr6 71188471 71188858 -111226384 - ERVL LTR ERVL -3073 2434 2142 537 353 66 15 chr6 71188936 71189403 -111225839 - ERVL LTR ERVL -3618 2036 1546 22 70 0 0 chr6 71189645 71189688 -111225554 + AT_rich Low_complexity Low_complexity 1 43 0 230 242 0 32 chr6 71189854 71189978 -111225264 + (TA)n Simple_repeat Simple_repeat 2 121 0 26 0 0 0 chr6 71191467 71191493 -111223749 + AT_rich Low_complexity Low_complexity 1 26 0 8197 66 10 7 chr6 71193210 71194277 -111220965 - MER11C LTR ERVK 0 1071 1 231 300 94 47 chr6 71194991 71195161 -111220081 + L3 LINE CR1 425 602 -975 1220 178 27 27 chr6 71195349 71195647 -111219595 - L1MA6 LINE L1 -12 6288 5991 1084 183 0 0 chr6 71195660 71195857 -111219385 + L1MA5 LINE L1 5752 5948 -352 2740 39 0 0 chr6 71196330 71196665 -111218577 - L1PA4 LINE L1 0 6155 5821 22 56 0 0 chr6 71196847 71196883 -111218359 + AT_rich Low_complexity Low_complexity 1 36 0 278 296 40 16 chr6 71198560 71198685 -111216557 - MLT1L LTR MaLR -22 593 466 198 227 13 107 chr6 71199311 71199386 -111215856 - MIR SINE MIR -136 126 59 22 88 0 0 chr6 71200305 71200362 -111214880 + AT_rich Low_complexity Low_complexity 1 57 0 182 330 126 19 chr6 71200711 71200814 -111214428 + L2 LINE L2 2942 3055 -217 323 297 44 39 chr6 71202101 71202283 -111212959 - L2 LINE L2 -13 3300 3118 24 53 0 0 chr6 71202821 71202859 -111212383 + AT_rich Low_complexity Low_complexity 1 38 0 225 226 26 0 chr6 71202920 71203035 -111212207 + (TA)n Simple_repeat Simple_repeat 2 119 0 511 306 54 4 chr6 71203818 71204079 -111211163 - HAL1 LINE L1 -113 2394 2121 583 359 37 41 chr6 71204080 71204565 -111210677 - HAL1 LINE L1 -1342 1165 683 2346 327 122 17 chr6 71205159 71205537 -111209705 + L2 LINE L2 1181 1518 -1795 1996 115 28 3 chr6 71205537 71205823 -111209419 - AluSx SINE Alu -19 293 1 2346 327 122 17 chr6 71205823 71207305 -111207937 + L2 LINE L2 1518 3308 -5 452 352 65 15 chr6 71208939 71209263 -111205979 + LTR16C LTR ERVL 152 491 0 1601 194 5 29 chr6 71209935 71210317 -111204925 - L1MA7 LINE L1 -1 6290 5918 2054 118 75 23 chr6 71210378 71210724 -111204518 + THE1B LTR MaLR 1 364 0 254 290 86 0 chr6 71210925 71211018 -111204224 - L2 LINE L2 -19 3294 3194 495 354 92 0 chr6 71211405 71211699 -111203543 + MER102b DNA MER1_type 17 337 -4 3182 164 35 58 chr6 71212682 71213500 -111201742 - L1M4c LINE L1 -5006 1378 579 477 252 0 0 chr6 71213507 71213622 -111201620 - L1M4 LINE L1 -455 5729 5615 510 375 86 21 chr6 71213623 71214406 -111200836 + L2 LINE L2 2395 3229 -84 210 330 43 21 chr6 71215483 71215577 -111199665 + L2 LINE L2 3203 3298 -15 34 65 0 0 chr6 71215619 71215681 -111199561 + AT_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chr6 71217066 71217090 -111198152 + AT_rich Low_complexity Low_complexity 1 24 0 565 353 75 22 chr6 71217807 71218209 -111197033 + L2 LINE L2 2395 2817 -497 2130 112 14 0 chr6 71218730 71219017 -111196225 - AluSq SINE Alu -19 294 4 2194 116 7 0 chr6 71219090 71219391 -111195851 + AluSc SINE Alu 1 303 -6 22 35 0 0 chr6 71219481 71219510 -111195732 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 71219914 71219937 -111195305 + AT_rich Low_complexity Low_complexity 1 23 0 401 292 111 48 chr6 71220307 71220999 -111194243 + L1MEc LINE L1 831 1566 -4830 588 255 53 63 chr6 71221004 71221315 -111193927 + L1MCc LINE L1 1254 1566 -4856 280 253 121 44 chr6 71221334 71221516 -111193726 + L1MC2 LINE L1 26 221 -6205 * 1038 227 242 16 chr6 71221515 71222123 -111193119 + L1MC2 LINE L1 1439 2183 -4243 6677 182 163 13 chr6 71222128 71223571 -111191671 + MER52A LTR ERV1 97 1755 0 465 222 91 54 chr6 71223571 71223792 -111191450 + L1MC2 LINE L1 2180 2408 -4018 893 184 22 22 chr6 71223878 71223965 -111191277 - L1 LINE L1 -1542 4604 4518 2027 148 73 14 chr6 71223965 71224309 -111190933 - THE1B LTR MaLR 0 364 1 893 184 22 22 chr6 71224309 71224449 -111190793 - L1 LINE L1 -1627 4519 4377 293 226 19 0 chr6 71224469 71224575 -111190667 + (TA)n Simple_repeat Simple_repeat 2 109 0 2189 218 32 20 chr6 71224586 71225140 -111190102 - L1 LINE L1 -1799 4347 3787 * 3423 181 44 19 chr6 71225119 71226482 -111188760 + L1MA7 LINE L1 4601 5990 -301 330 273 40 0 chr6 71226502 71226601 -111188641 + L1MC2 LINE L1 3243 3345 -3081 1282 242 52 48 chr6 71226617 71227175 -111188067 + L1MC2 LINE L1 5049 5608 -818 1619 192 7 3 chr6 71227175 71227467 -111187775 + AluJb SINE Alu 1 293 -19 3583 203 67 3 chr6 71227496 71228276 -111186966 + L1MC2 LINE L1 5769 6598 -26 228 324 70 46 chr6 71228408 71228582 -111186660 + L1MEc LINE L1 1207 1375 -5021 204 97 0 0 chr6 71228582 71228613 -111186629 + (CA)n Simple_repeat Simple_repeat 2 32 0 228 324 70 46 chr6 71228613 71228852 -111186390 + L1MEc LINE L1 1375 1630 -4766 7228 40 14 0 chr6 71229020 71230115 -111185127 - L1PA4 LINE L1 -2 6153 5046 424 238 48 14 chr6 71230480 71230627 -111184615 - L1MEc LINE L1 -4365 2031 1880 1393 259 25 20 chr6 71230803 71231200 -111184042 - MLT1C LTR MaLR -4 463 65 2997 94 12 0 chr6 71231228 71231632 -111183610 - MLT2A2 LTR ERVL -44 409 1 1143 263 37 83 chr6 71231718 71231785 -111183457 - MLT1C-int LTR MaLR -11 1360 1291 2340 115 35 58 chr6 71231785 71232220 -111183022 - L1PA13 LINE L1 -3 6160 5736 1143 263 37 83 chr6 71232220 71232586 -111182656 - MLT1C-int LTR MaLR -80 1291 947 281 281 141 15 chr6 71233449 71233584 -111181658 + L3 LINE CR1 1276 1427 -150 1125 282 59 10 chr6 71233726 71234295 -111180947 + MLT1E2 LTR MaLR 1 621 -5 45 0 0 0 chr6 71234490 71234535 -111180707 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr6 71236309 71236330 -111178912 + AT_rich Low_complexity Low_complexity 1 21 0 261 116 93 0 chr6 71236433 71236476 -111178766 - MLT2B1 LTR ERVL 0 515 469 214 162 27 0 chr6 71236476 71236513 -111178729 + (CA)n Simple_repeat Simple_repeat 1 38 0 1063 241 43 44 chr6 71236546 71236903 -111178339 - MLT2B1 LTR ERVL -48 366 12 189 0 0 0 chr6 71238227 71238248 -111176994 + (GA)n Simple_repeat Simple_repeat 2 22 0 316 186 0 0 chr6 71238285 71238344 -111176898 - HsTC2 DNA Tc2 -2 1896 1838 1552 204 0 13 chr6 71238462 71238761 -111176481 - AluJb SINE Alu -11 301 7 2355 108 11 6 chr6 71239589 71239942 -111175300 - THE1A LTR MaLR 0 355 1 9133 116 108 1 chr6 71239942 71241347 -111173895 - THE1A-int LTR MaLR 0 1580 25 501 56 44 67 chr6 71241347 71241437 -111173805 - THE1B LTR MaLR -276 88 1 380 328 0 15 chr6 71241919 71242050 -111173192 + MER63 DNA MER1_type 1 755 -307 244 351 0 0 chr6 71242056 71242133 -111173109 + MER63 DNA MER1_type 983 1059 -1 352 194 202 0 chr6 71242638 71242762 -111172480 + MER106B DNA MER1_type 896 1044 -15 481 238 160 6 chr6 71242790 71242971 -111172271 + MER3 DNA MER1_type 1 209 0 191 333 197 20 chr6 71243557 71243704 -111171538 - MIR SINE MIR -76 186 14 1062 214 33 102 chr6 71243791 71244183 -111171059 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr6 71244433 71244456 -111170786 + AT_rich Low_complexity Low_complexity 1 23 0 303 93 0 0 chr6 71245113 71245156 -111170086 + (TG)n Simple_repeat Simple_repeat 2 44 0 968 196 0 16 chr6 71245756 71245945 -111169297 - L1PB4 LINE L1 0 6156 5971 672 173 7 14 chr6 71245945 71246084 -111169158 - L1 LINE L1 -1783 4363 4226 348 49 0 88 chr6 71246091 71246193 -111169049 + (TA)n Simple_repeat Simple_repeat 2 94 0 1665 182 21 24 chr6 71246196 71246526 -111168716 - L1 LINE L1 -1913 4233 3905 355 297 158 3 chr6 71246549 71246929 -111168313 - L1ME4a LINE L1 -4 6117 5679 26 30 0 0 chr6 71247463 71247496 -111167746 + AT_rich Low_complexity Low_complexity 1 33 0 368 259 63 68 chr6 71248521 71248726 -111166516 - MER63A DNA MER1_type 0 210 7 354 296 40 40 chr6 71249416 71249568 -111165674 + MER69A DNA AcHobo 2 153 -24 254 236 0 0 chr6 71250902 71250957 -111164285 - MIR SINE MIR -62 200 146 1694 199 30 60 chr6 71250984 71251421 -111163821 - L1MA10 LINE L1 -11 6323 5900 186 103 0 0 chr6 71252180 71252209 -111163033 + (CAT)n Simple_repeat Simple_repeat 1 29 0 1068 297 77 69 chr6 71253495 71254676 -111160566 + HAL1 LINE L1 8 1198 -1309 35 71 0 0 chr6 71254676 71254746 -111160496 + AT_rich Low_complexity Low_complexity 1 70 0 255 270 87 32 chr6 71254779 71254905 -111160337 + HAL1 LINE L1 1239 1371 -1136 1393 290 69 10 chr6 71255165 71255669 -111159573 + HERV16 LTR ERVL 9 542 -4454 2322 123 0 14 chr6 71255880 71256231 -111159011 + LTR9B LTR ERV1 215 560 -84 428 279 0 109 chr6 71256582 71256729 -111158513 + L2 LINE L2 3181 3311 -2 437 324 63 93 chr6 71257126 71257325 -111157917 + L1MEd LINE L1 61 264 -5855 524 259 23 8 chr6 71257325 71257456 -111157786 - FLAM_A SINE Alu 0 133 1 437 324 63 93 chr6 71257456 71257729 -111157513 + L1MEd LINE L1 264 519 -5600 207 0 0 0 chr6 71257751 71257774 -111157468 + (CAA)n Simple_repeat Simple_repeat 2 24 0 525 275 12 31 chr6 71257825 71257985 -111157257 - L2 LINE L2 -4 3309 3153 303 233 85 23 chr6 71258198 71258327 -111156915 + L1 LINE L1 3209 3345 -2801 343 250 95 0 chr6 71258983 71259067 -111156175 - MER44D DNA MER2_type -1 608 517 252 78 0 78 chr6 71259075 71259139 -111156103 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 1980 212 75 2 chr6 71259142 71259557 -111155685 - MER44D DNA MER2_type -105 500 1 249 259 0 0 chr6 71260396 71260450 -111154792 - MIR SINE MIR -64 144 91 1200 95 12 0 chr6 71260837 71261005 -111154237 - AluY SINE Alu -6 305 136 471 256 8 16 chr6 71261064 71261189 -111154053 - MER5B DNA MER1_type -1 177 54 592 159 0 9 chr6 71261197 71261304 -111153938 - MER53 DNA DNA -83 106 1 24 0 0 0 chr6 71261658 71261682 -111153560 + AT_rich Low_complexity Low_complexity 1 24 0 1487 182 33 7 chr6 71261760 71262062 -111153180 - L1PB4 LINE L1 0 6156 5847 5100 177 45 8 chr6 71262620 71263639 -111151603 - L1MC2 LINE L1 -9 6335 5279 485 254 47 10 chr6 71263656 71263849 -111151393 - L1M4 LINE L1 -761 5385 5186 1630 135 163 9 chr6 71265237 71265562 -111149680 + THE1C LTR MaLR 1 375 0 405 273 50 22 chr6 71266907 71267046 -111148196 - MIR SINE MIR -73 189 47 5489 141 39 0 chr6 71268476 71269517 -111145725 + L1PA15 LINE L1 5064 6162 -3 2924 135 0 4 chr6 71269663 71270136 -111145106 + L1MA3 LINE L1 5835 6305 0 22 0 0 0 chr6 71270374 71270396 -111144846 + AT_rich Low_complexity Low_complexity 1 22 0 752 302 118 51 chr6 71270575 71271344 -111143898 + L1M4 LINE L1 2570 3390 -2756 200 314 40 32 chr6 71271411 71271535 -111143707 - L2 LINE L2 -1284 2030 1906 204 214 0 0 chr6 71272512 71272568 -111142674 + (TA)n Simple_repeat Simple_repeat 2 57 0 271 390 49 15 chr6 71272641 71272846 -111142396 + L2 LINE L2 2896 3107 -165 665 201 39 124 chr6 71272951 71273210 -111142032 + MER58 DNA MER1_type 24 260 -81 4780 149 16 20 chr6 71274464 71275354 -111139888 + L1MA5A LINE L1 5407 6292 -5 315 0 0 0 chr6 71275813 71275848 -111139394 + (TA)n Simple_repeat Simple_repeat 1 35 0 2165 128 0 0 chr6 71275848 71276146 -111139096 - AluSg SINE Alu -12 298 1 202 200 44 0 chr6 71276180 71276225 -111139017 + GA-rich Low_complexity Low_complexity 3 49 0 1845 144 7 0 chr6 71276481 71276784 -111138458 + AluSp SINE Alu 4 308 0 7057 147 8 9 chr6 71276784 71277934 -111137308 + MSTA-int LTR MaLR 432 1580 0 1508 191 139 18 chr6 71277934 71278316 -111136926 + MSTA LTR MaLR 1 428 0 25 65 0 0 chr6 71278373 71278419 -111136823 + AT_rich Low_complexity Low_complexity 1 46 0 240 86 0 0 chr6 71278809 71278844 -111136398 + (TG)n Simple_repeat Simple_repeat 2 36 0 1312 154 37 40 chr6 71279314 71279612 -111135630 - L1MA7 LINE L1 0 6291 5995 1884 106 88 0 chr6 71279760 71280033 -111135209 + AluSc SINE Alu 1 297 -12 233 282 91 45 chr6 71280091 71280201 -111135041 - MIR SINE MIR -59 203 89 455 252 18 0 chr6 71281102 71281213 -111134029 + MER81 DNA DNA 2 114 0 21 36 0 0 chr6 71281843 71281871 -111133371 + AT_rich Low_complexity Low_complexity 1 28 0 251 62 0 0 chr6 71282346 71282406 -111132836 - Alu SINE Alu 0 311 252 2154 62 39 23 chr6 71283179 71283465 -111131777 + AluY SINE Alu 1 294 -17 387 0 0 0 chr6 71283465 71283508 -111131734 + (CA)n Simple_repeat Simple_repeat 2 44 0 2154 62 39 23 chr6 71283508 71283527 -111131715 + AluY SINE Alu 294 311 0 2169 151 6 0 chr6 71285356 71285707 -111129535 - L1PB4 LINE L1 -8 6148 5796 462 36 0 0 chr6 71285707 71285763 -111129479 + (TG)n Simple_repeat Simple_repeat 2 57 0 4893 258 84 62 chr6 71285764 71289153 -111126089 - L1PA15-16 LINE L1 -1432 5417 1846 258 56 0 0 chr6 71289153 71289189 -111126053 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4893 258 84 62 chr6 71289189 71290353 -111124889 - L1PA15-16 LINE L1 -5003 1846 709 1029 220 47 24 chr6 71290333 71290588 -111124654 - L1PA15-16 LINE L1 -6587 262 2 * 2329 88 0 7 chr6 71292180 71292486 -111122756 + AluSx SINE Alu 1 304 -8 1034 143 90 11 chr6 71292770 71292959 -111122283 + MER1B DNA MER1_type 136 339 0 1990 124 3 20 chr6 71293575 71293881 -111121361 + AluSg SINE Alu 1 301 -9 348 368 95 7 chr6 71295381 71295685 -111119557 - HERVL LTR ERVL -1413 4241 3911 261 349 55 25 chr6 71295715 71295953 -111119289 - HERVL LTR ERVL -1785 3869 3625 418 340 70 25 chr6 71296133 71296418 -111118824 - HERVL LTR ERVL -2340 3424 3127 568 273 90 43 chr6 71296419 71296930 -111118312 - L1MCc LINE L1 -4887 1536 1315 284 289 169 28 chr6 71297660 71297802 -111117440 - MER5B DNA MER1_type -13 165 4 204 40 0 0 chr6 71298096 71298121 -111117121 + (TA)n Simple_repeat Simple_repeat 1 25 0 21 71 0 0 chr6 71298129 71298171 -111117071 + AT_rich Low_complexity Low_complexity 1 42 0 198 71 0 0 chr6 71298867 71298895 -111116347 + (TA)n Simple_repeat Simple_repeat 2 29 0 765 333 46 34 chr6 71299371 71299822 -111115420 - L2 LINE L2 -72 3241 2785 279 302 132 11 chr6 71301029 71301218 -111114024 + MIR SINE MIR 51 262 0 279 269 59 17 chr6 71303850 71303969 -111111273 + MIR SINE MIR 82 205 -57 447 264 90 13 chr6 71304051 71304206 -111111036 + MIR SINE MIR 68 234 -28 215 244 0 0 chr6 71304448 71304489 -111110753 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 306 286 0 0 chr6 71304592 71304683 -111110559 - L1MC4a LINE L1 -1925 5883 5793 254 252 62 15 chr6 71304796 71304976 -111110266 - L1MC4a LINE L1 -739 5431 5255 332 331 87 29 chr6 71305044 71305458 -111109784 - L1MC4a LINE L1 -989 5157 4720 2094 168 39 53 chr6 71305867 71306423 -111108819 + MLT2A2 LTR ERVL 1 554 0 276 181 0 188 chr6 71306767 71306905 -111108337 + L1MDa LINE L1 1924 2035 -4505 1952 148 117 5 chr6 71306914 71307299 -111107943 + L1PA16 LINE L1 5718 6145 -21 24 0 0 0 chr6 71307813 71307837 -111107405 + AT_rich Low_complexity Low_complexity 1 24 0 304 233 22 0 chr6 71307872 71307962 -111107280 - L1MC/D LINE L1 -2006 5802 5711 267 232 182 10 chr6 71310368 71310467 -111104775 - MIR SINE MIR -10 252 137 29 0 0 0 chr6 71311143 71311172 -111104070 + AT_rich Low_complexity Low_complexity 1 29 0 294 73 0 0 chr6 71312518 71312559 -111102683 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr6 71312664 71312692 -111102550 + AT_rich Low_complexity Low_complexity 1 28 0 1082 211 188 37 chr6 71312921 71313304 -111101938 - MSTB2 LTR MaLR -2 455 15 21 36 0 0 chr6 71313772 71313800 -111101442 + AT_rich Low_complexity Low_complexity 1 28 0 2157 200 22 13 chr6 71314820 71315271 -111099971 - L1PA16 LINE L1 -8 6158 5704 24 0 0 0 chr6 71316052 71316076 -111099166 + AT_rich Low_complexity Low_complexity 1 24 0 566 116 70 29 chr6 71316750 71316922 -111098320 + GA-rich Low_complexity Low_complexity 2 180 0 21 57 0 0 chr6 71317355 71317390 -111097852 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 71318392 71318413 -111096829 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 71318852 71318875 -111096367 + AT_rich Low_complexity Low_complexity 1 23 0 40 49 0 0 chr6 71319157 71319218 -111096024 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr6 71319329 71319352 -111095890 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 71320078 71320106 -111095136 + AT_rich Low_complexity Low_complexity 1 28 0 3470 188 185 57 chr6 71320774 71321777 -111093465 + MER52A LTR ERV1 1 1132 -623 712 189 44 82 chr6 71321770 71321976 -111093266 + MER52A LTR ERV1 1350 1547 -208 * 214 154 58 0 chr6 71322051 71322103 -111093139 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 26 82 0 0 chr6 71322468 71322529 -111092713 + AT_rich Low_complexity Low_complexity 1 61 0 2282 73 0 58 chr6 71322692 71323020 -111092222 + AluY SINE Alu 1 309 -2 24 53 0 0 chr6 71323375 71323413 -111091829 + AT_rich Low_complexity Low_complexity 1 38 0 180 100 40 20 chr6 71325354 71325404 -111089838 + (TA)n Simple_repeat Simple_repeat 1 51 0 184 338 106 0 chr6 71326066 71326217 -111089025 - L2 LINE L2 -692 2622 2456 180 0 0 0 chr6 71326416 71326436 -111088806 + (A)n Simple_repeat Simple_repeat 1 20 0 300 125 18 0 chr6 71327335 71327391 -111087851 + L1PA4 LINE L1 6095 6151 -4 2128 133 0 0 chr6 71329791 71330091 -111085151 - AluSq SINE Alu -13 300 1 1066 149 67 34 chr6 71330302 71330387 -111084855 - L1MB1 LINE L1 -325 5843 5762 1684 155 191 8 chr6 71330387 71330749 -111084493 - MSTA LTR MaLR 0 428 1 1066 149 67 34 chr6 71330749 71330871 -111084371 - L1MB1 LINE L1 -406 5762 5629 1784 133 11 71 chr6 71330873 71331227 -111084015 + L1MB1 LINE L1 5830 6162 -6 180 0 0 0 chr6 71332166 71332186 -111083056 + (CA)n Simple_repeat Simple_repeat 2 21 0 30 45 0 0 chr6 71332653 71332697 -111082545 + AT_rich Low_complexity Low_complexity 1 44 0 212 234 43 0 chr6 71383338 71383385 -111031857 - MER5A DNA MER1_type -80 109 61 739 149 81 0 chr6 71383423 71383584 -111031658 - L1MA7 LINE L1 -12 6279 6106 3892 177 35 25 chr6 71383767 71384837 -111030405 - L1MA7 LINE L1 -178 6113 5030 935 313 60 57 chr6 71384879 71385495 -111029747 - L1ME LINE L1 -5443 627 10 1157 224 19 101 chr6 71385697 71386063 -111029179 + MLT1A1 LTR MaLR 1 336 -29 886 186 58 5 chr6 71387089 71387277 -111027965 + MSTB LTR MaLR 1 198 -228 526 336 182 28 chr6 71388432 71389384 -111025858 - L2 LINE L2 -4 3309 2210 216 97 0 0 chr6 71389810 71389841 -111025401 + (TG)n Simple_repeat Simple_repeat 2 32 0 958 144 30 6 chr6 71389943 71390110 -111025132 + L1MC1 LINE L1 6163 6333 0 253 275 14 0 chr6 71390552 71390621 -111024621 - L2 LINE L2 -1 3312 3243 226 119 0 0 chr6 71390661 71390703 -111024539 - LTR66 LTR ERVL -171 439 398 226 122 0 0 chr6 71390673 71390714 -111024528 + LTR66 LTR ERVL 398 438 -172 207 139 0 0 chr6 71390715 71390751 -111024491 + (TA)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr6 71391597 71391627 -111023615 + AT_rich Low_complexity Low_complexity 1 30 0 295 130 74 0 chr6 71391691 71391745 -111023497 + MER67C LTR ERV1 5 62 -452 1342 203 66 58 chr6 71391784 71392277 -111022965 + MER67C LTR ERV1 59 514 0 1883 159 0 0 chr6 71393032 71393327 -111021915 + AluSx SINE Alu 1 295 -17 23 33 0 0 chr6 71394456 71394486 -111020756 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr6 71394692 71394724 -111020518 + AT_rich Low_complexity Low_complexity 1 32 0 1178 182 14 0 chr6 71394880 71395089 -111020153 - AluJb SINE Alu -17 295 84 2022 206 136 98 chr6 71395117 71395481 -111019761 + L1MC3 LINE L1 6709 7058 -727 244 276 66 0 chr6 71395481 71395557 -111019685 + MLT1F1 LTR MaLR 46 126 -441 2022 206 136 98 chr6 71395557 71395913 -111019329 + L1MC3 LINE L1 7058 7534 -251 965 161 99 43 chr6 71396015 71396226 -111019016 + MSTA LTR MaLR 206 428 0 648 223 6 0 chr6 71396421 71396587 -111018655 - L1M4 LINE L1 -987 5159 4993 255 275 37 9 chr6 71396750 71396859 -111018383 - LTR33 LTR ERVL -11 510 399 181 321 87 36 chr6 71397199 71397395 -111017847 + L2 LINE L2 1695 1900 -1414 341 281 14 36 chr6 71398029 71398168 -111017074 + L1MA8 LINE L1 6130 6265 -26 301 229 94 21 chr6 71400464 71400477 -111014765 + L1PB3 LINE L1 5835 5846 -308 1305 148 54 14 chr6 71400477 71400754 -111014488 - L1MA8 LINE L1 0 6291 6004 301 229 94 21 chr6 71400754 71400836 -111014406 + L1PB3 LINE L1 5846 5937 -217 * 721 87 78 9 chr6 71400755 71400870 -111014372 + L1MA8 LINE L1 5848 5970 -321 204 205 0 0 chr6 71401300 71401339 -111013903 + (TG)n Simple_repeat Simple_repeat 1 39 0 445 263 131 20 chr6 71402679 71402877 -111012365 - MER58A DNA MER1_type 0 224 5 351 256 67 79 chr6 71403246 71403410 -111011832 - MLT1J2 LTR MaLR -15 435 274 814 207 11 37 chr6 71404023 71404211 -111011031 - FRAM SINE Alu -1 175 1 242 229 67 29 chr6 71405338 71405443 -111009799 - MLT1G1 LTR MaLR 0 595 487 447 264 123 34 chr6 71405470 71405762 -111009480 - L1M4 LINE L1 -3719 2427 2110 457 14 28 90 chr6 71405881 71406025 -111009217 + (TA)n Simple_repeat Simple_repeat 2 136 0 320 38 16 119 chr6 71406079 71406264 -111008978 + (TA)n Simple_repeat Simple_repeat 1 166 0 2218 74 7 10 chr6 71407123 71407421 -111007821 - AluY SINE Alu -14 297 1 415 196 4 45 chr6 71409269 71409406 -111005836 - LTR41 LTR ERVL 0 795 645 268 317 76 85 chr6 71409697 71410155 -111005087 + L2 LINE L2 449 902 -2412 792 329 89 69 chr6 71410618 71412143 -111003099 + L2 LINE L2 1301 2856 -458 22 70 0 0 chr6 71412953 71412996 -111002246 + AT_rich Low_complexity Low_complexity 1 43 0 650 212 0 15 chr6 71413509 71413641 -111001601 + MSTD LTR MaLR 10 139 -257 626 116 53 9 chr6 71413687 71413809 -111001433 + MSTC LTR MaLR 241 428 0 458 269 87 74 chr6 71414757 71415147 -111000095 + HAL1b LINE L1 211 605 -743 33 25 0 0 chr6 71415366 71415406 -110999836 + AT_rich Low_complexity Low_complexity 1 40 0 308 311 50 72 chr6 71415674 71415854 -110999388 + L1ME3A LINE L1 5965 6140 -30 281 342 56 7 chr6 71418182 71418328 -110996914 - MIR SINE MIR -54 208 57 254 185 31 0 chr6 71418390 71418455 -110996787 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2171 168 63 0 chr6 71420463 71420862 -110994380 + MSTA LTR MaLR 5 428 0 473 156 128 0 chr6 71420980 71421089 -110994153 + Charlie5 DNA MER1_type 2 124 -2488 914 226 151 3 chr6 71421091 71421428 -110993814 + Charlie5 DNA MER1_type 2238 2624 0 214 421 59 0 chr6 71422923 71423144 -110992098 - MIR SINE MIR -22 240 7 25 65 0 0 chr6 71424504 71424550 -110990692 + AT_rich Low_complexity Low_complexity 1 46 0 30 59 0 0 chr6 71425692 71425743 -110989499 + AT_rich Low_complexity Low_complexity 1 51 0 25 51 0 0 chr6 71426226 71426265 -110988977 + AT_rich Low_complexity Low_complexity 1 39 0 1370 156 0 0 chr6 71427868 71428080 -110987162 + AluSg/x SINE Alu 97 308 -4 2144 104 10 0 chr6 71428571 71428859 -110986383 - AluSc SINE Alu -18 291 1 484 295 82 30 chr6 71429045 71429313 -110985929 + L2 LINE L2 1859 2140 -1174 1625 172 37 42 chr6 71429554 71429931 -110985311 + THE1C LTR MaLR 1 375 0 9361 133 29 32 chr6 71429931 71431407 -110983835 + THE1C-int LTR MaLR 1 1480 -100 1677 158 45 20 chr6 71431407 71431699 -110983543 + AluSx SINE Alu 1 299 -13 9361 133 29 32 chr6 71431699 71431721 -110983521 + THE1C-int LTR MaLR 1480 1501 -79 327 25 0 0 chr6 71431721 71431761 -110983481 + (CA)n Simple_repeat Simple_repeat 2 41 0 9361 133 29 32 chr6 71431761 71431846 -110983396 + THE1C-int LTR MaLR 1501 1580 0 1861 136 37 40 chr6 71431846 71432222 -110983020 + THE1C LTR MaLR 1 375 0 213 328 0 0 chr6 71432282 71432349 -110982893 + L2 LINE L2 3246 3312 -1 281 236 194 42 chr6 71432554 71432698 -110982544 + MIR SINE MIR 95 260 -2 1807 141 0 53 chr6 71432891 71433225 -110982017 + AluSx SINE Alu 2 319 0 1229 237 94 15 chr6 71433412 71433741 -110981501 + LTR18A LTR ERVL 1 355 -2 23 86 0 0 chr6 71433749 71433807 -110981435 + AT_rich Low_complexity Low_complexity 1 58 0 5942 233 46 55 chr6 71434491 71439685 -110975557 + L1MB1 LINE L1 2404 7516 -71 22 56 0 0 chr6 71440622 71440658 -110974584 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 71440909 71440937 -110974305 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr6 71442356 71442384 -110972858 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 221 320 0 0 chr6 71442403 71442453 -110972789 - MIR SINE MIR -99 109 60 240 349 100 21 chr6 71442523 71442804 -110972438 + L3 LINE CR1 1216 1518 -59 21 0 0 0 chr6 71443808 71443829 -110971413 + AT_rich Low_complexity Low_complexity 1 21 0 29 70 0 0 chr6 71444308 71444365 -110970877 + AT_rich Low_complexity Low_complexity 1 57 0 701 259 16 21 chr6 71444759 71444948 -110970294 + MER5A DNA MER1_type 1 188 -1 404 288 100 19 chr6 71444957 71445117 -110970125 + MER5B DNA MER1_type 6 178 0 280 327 111 13 chr6 71448166 71448319 -110966923 - MIR SINE MIR -58 204 37 505 251 22 69 chr6 71448323 71448554 -110966688 - L1ME LINE L1 -3707 2373 2154 551 210 48 139 chr6 71449151 71449403 -110965839 + LTR68 LTR ERV1 512 740 0 209 57 29 0 chr6 71449413 71449448 -110965794 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 329 229 46 37 chr6 71449452 71449561 -110965681 - L1ME LINE L1 -4090 2171 2062 523 277 47 47 chr6 71449705 71450023 -110965219 - L1ME LINE L1 -4490 1771 1454 1046 195 9 9 chr6 71450041 71450251 -110964991 - AluJb SINE Alu -18 294 85 652 265 78 48 chr6 71450254 71450864 -110964378 - L1ME LINE L1 -4683 1397 762 1294 297 43 57 chr6 71450890 71451628 -110963614 - L1ME LINE L1 -5285 785 58 192 391 9 18 chr6 71452204 71452314 -110962928 - L2 LINE L2 -221 3051 2943 1820 164 4 0 chr6 71453304 71453585 -110961657 + AluSx SINE Alu 1 282 -30 180 0 0 0 chr6 71456103 71456123 -110959119 + (CAG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr6 71456198 71456219 -110959023 + AT_rich Low_complexity Low_complexity 1 21 0 289 307 8 39 chr6 71456449 71456576 -110958666 + L2 LINE L2 2157 2279 -1035 22 88 0 0 chr6 71456937 71456994 -110958248 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr6 71457276 71457300 -110957942 + AT_rich Low_complexity Low_complexity 1 24 0 229 380 30 11 chr6 71457528 71457657 -110957585 - MIR SINE MIR -72 136 5 515 56 0 14 chr6 71457681 71457753 -110957489 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 193 0 61 30 chr6 71458427 71458460 -110956782 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 358 323 63 13 chr6 71458706 71458864 -110956378 + MLT1I LTR MaLR 40 205 -204 198 365 19 9 chr6 71459892 71459999 -110955243 - L2 LINE L2 -380 2933 2826 470 345 25 5 chr6 71460380 71460583 -110954659 - L2 LINE L2 -496 2818 2612 36 62 0 0 chr6 71460693 71460757 -110954485 + AT_rich Low_complexity Low_complexity 1 64 0 900 186 33 22 chr6 71461443 71461614 -110953628 + AluJb SINE Alu 120 295 -17 2170 53 0 50 chr6 71461614 71461915 -110953327 + AluY SINE Alu 21 306 -5 900 186 33 22 chr6 71461915 71461926 -110953316 + AluJb SINE Alu 295 304 -8 222 318 183 8 chr6 71462063 71462189 -110953053 + L2 LINE L2 363 510 -2804 216 0 0 0 chr6 71462199 71462223 -110953019 + (A)n Simple_repeat Simple_repeat 1 24 0 315 287 191 0 chr6 71462261 71462418 -110952824 - MER5A DNA MER1_type 0 189 3 592 262 219 4 chr6 71464099 71464355 -110950887 - MER110 LTR ERV1 -180 311 1 279 71 0 0 chr6 71465484 71465526 -110949716 + (CA)n Simple_repeat Simple_repeat 2 43 0 1547 164 26 0 chr6 71465653 71465922 -110949320 + AluJb SINE Alu 18 293 -19 1372 243 83 11 chr6 71467329 71467703 -110947539 + LTR52 LTR ERVL 1 401 -20 222 341 47 0 chr6 71467715 71467800 -110947442 - MER5A DNA MER1_type 0 189 101 228 204 145 92 chr6 71468265 71468417 -110946825 + MER5A DNA MER1_type 24 183 -6 5003 201 21 10 chr6 71469994 71472055 -110943187 + L1PA16 LINE L1 4069 6153 -13 2226 111 45 0 chr6 71472191 71472550 -110942692 + L1PA13 LINE L1 5789 6163 0 27 62 0 0 chr6 71472576 71472624 -110942618 + AT_rich Low_complexity Low_complexity 1 48 0 22 70 0 0 chr6 71472734 71472777 -110942465 + AT_rich Low_complexity Low_complexity 1 43 0 523 171 62 8 chr6 71472781 71472910 -110942332 - L1MA9 LINE L1 -32 6280 6145 9259 172 24 26 chr6 71473000 71476492 -110938750 + L1PA14 LINE L1 2672 6149 -12 27 49 0 0 chr6 71477272 71477313 -110937929 + AT_rich Low_complexity Low_complexity 1 41 0 1615 201 14 0 chr6 71478426 71478720 -110936522 - AluJb SINE Alu -14 298 1 255 335 73 83 chr6 71478734 71479508 -110935734 - L2 LINE L2 -5 3267 2463 22 35 0 0 chr6 71480149 71480178 -110935064 + AT_rich Low_complexity Low_complexity 1 29 0 1038 260 83 18 chr6 71480202 71480541 -110934701 + L1MDa LINE L1 35 395 -6145 5110 131 9 5 chr6 71480543 71481340 -110933902 + L1PA15 LINE L1 5360 6159 -6 3214 215 98 66 chr6 71481352 71482232 -110933010 + L1MDa LINE L1 780 1630 -4910 7530 31 0 0 chr6 71482232 71483244 -110931998 + L1PA4 LINE L1 5144 6155 0 3214 215 98 66 chr6 71483244 71483368 -110931874 + L1MDa LINE L1 1630 1749 -4791 435 83 0 0 chr6 71483368 71483428 -110931814 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 3214 215 98 66 chr6 71483428 71483777 -110931465 + L1MDa LINE L1 1749 2112 -4428 280 197 14 42 chr6 71483762 71483833 -110931409 - L1MA9 LINE L1 -205 6107 6039 * 335 263 40 0 chr6 71483842 71483941 -110931301 + L1MA9 LINE L1 6171 6273 -39 503 229 85 7 chr6 71483985 71484138 -110931104 + L1MDa LINE L1 2146 2310 -4230 281 167 115 0 chr6 71484136 71484214 -110931028 + L1MD2 LINE L1 6047 6133 -226 * 369 0 0 0 chr6 71484218 71484259 -110930983 + (CA)n Simple_repeat Simple_repeat 2 42 0 418 271 57 0 chr6 71484261 71484401 -110930841 + L1MD3 LINE L1 7835 7982 -13 415 232 61 55 chr6 71484526 71484690 -110930552 + L1MDa LINE L1 1798 1962 -4578 840 332 45 30 chr6 71484696 71485163 -110930079 + L1ME2 LINE L1 5561 6034 -130 1946 111 14 34 chr6 71486508 71486805 -110928437 - AluSx SINE Alu -17 295 5 22 35 0 0 chr6 71486952 71486981 -110928261 + AT_rich Low_complexity Low_complexity 1 29 0 329 346 72 34 chr6 71488635 71488956 -110926286 - L1 LINE L1 -3089 3057 2725 25 75 0 0 chr6 71489046 71489099 -110926143 + AT_rich Low_complexity Low_complexity 1 53 0 2059 174 11 8 chr6 71489451 71489825 -110925417 - THE1C LTR MaLR 0 375 1 9344 134 40 9 chr6 71489825 71491307 -110923935 - THE1C-int LTR MaLR 0 1580 53 1350 142 36 0 chr6 71491313 71491538 -110923704 - THE1C-int LTR MaLR -1346 234 2 2179 122 32 16 chr6 71491539 71491908 -110923334 - THE1C LTR MaLR 0 375 1 246 209 23 35 chr6 71491940 71492026 -110923216 + T-rich Low_complexity Low_complexity 1 85 0 21 36 0 0 chr6 71492509 71492537 -110922705 + AT_rich Low_complexity Low_complexity 1 28 0 645 323 10 0 chr6 71492995 71493193 -110922049 - LTR16A LTR ERVL -27 423 224 22 56 0 0 chr6 71493494 71493530 -110921712 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 71493745 71493773 -110921469 + AT_rich Low_complexity Low_complexity 1 28 0 1603 183 36 44 chr6 71494030 71494419 -110920823 + MLT1B LTR MaLR 1 386 -4 47 73 0 0 chr6 71494492 71494588 -110920654 + AT_rich Low_complexity Low_complexity 1 96 0 384 221 35 12 chr6 71494749 71494835 -110920407 + MLT1E LTR MaLR 36 123 -470 418 220 113 33 chr6 71494863 71495102 -110920140 + MLT1E LTR MaLR 207 546 -47 459 0 0 0 chr6 71495102 71495153 -110920089 + (TG)n Simple_repeat Simple_repeat 2 52 0 418 220 113 33 chr6 71495153 71495200 -110920042 + MLT1E LTR MaLR 546 588 -5 245 313 0 0 chr6 71496044 71496127 -110919115 + GA-rich Low_complexity Low_complexity 3 144 0 27 49 0 0 chr6 71496247 71496288 -110918954 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr6 71496656 71496684 -110918558 + AT_rich Low_complexity Low_complexity 1 28 0 437 344 126 38 chr6 71498155 71498838 -110916404 + L2 LINE L2 190 932 -2382 256 378 0 15 chr6 71500790 71500925 -110914317 - HAL1 LINE L1 -1584 923 791 190 281 207 25 chr6 71502074 71502195 -110913047 - MIR SINE MIR -42 220 78 187 399 75 0 chr6 71502476 71502609 -110912633 + L2 LINE L2 2247 2389 -925 261 293 0 0 chr6 71503020 71503078 -110912164 + L2 LINE L2 2994 3051 -221 330 309 166 13 chr6 71503819 71504006 -110911236 + MIR SINE MIR 4 202 -11 189 0 0 0 chr6 71504338 71504359 -110910883 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 267 54 0 0 chr6 71504646 71504683 -110910559 + (TG)n Simple_repeat Simple_repeat 2 38 0 1223 250 30 3 chr6 71505388 71505688 -110909554 + MER58B DNA MER1_type 26 333 -8 472 268 106 23 chr6 71505908 71506173 -110909069 - L1MCa LINE L1 -3359 3067 2781 1804 208 78 9 chr6 71506367 71506804 -110908438 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr6 71507027 71507048 -110908194 + AT_rich Low_complexity Low_complexity 1 21 0 3301 235 83 27 chr6 71507370 71509241 -110906001 + L1MB7 LINE L1 4015 6184 0 270 243 0 0 chr6 71509291 71509361 -110905881 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 301 330 105 14 chr6 71509417 71509626 -110905616 - L1MCa LINE L1 -5091 1335 1108 1509 210 25 33 chr6 71510061 71510428 -110904814 - MLT1A1 LTR MaLR -1 364 1 285 209 0 0 chr6 71511918 71511985 -110903257 + (CA)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr6 71512396 71512418 -110902824 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr6 71513590 71513625 -110901617 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr6 71514304 71514337 -110900905 + AT_rich Low_complexity Low_complexity 1 33 0 1423 191 11 31 chr6 71517669 71518019 -110897223 - L1MA9 LINE L1 -9 6303 5961 22 70 0 0 chr6 71518202 71518245 -110896997 + AT_rich Low_complexity Low_complexity 1 43 0 210 326 89 15 chr6 71518353 71518488 -110896754 + MIR SINE MIR 47 191 -71 532 321 65 62 chr6 71518668 71519313 -110895929 - L1ME4a LINE L1 -179 5942 5296 259 274 14 82 chr6 71519495 71519673 -110895569 - L1MC/D LINE L1 -537 5584 5505 806 241 54 83 chr6 71519786 71520122 -110895120 + MER83C LTR ERV1 48 373 0 24469 35 2 0 chr6 71520193 71523947 -110891295 + L1PA4 LINE L1 2382 6144 -11 28 0 0 0 chr6 71523947 71523975 -110891267 + AT_rich Low_complexity Low_complexity 1 28 0 1695 189 0 7 chr6 71524522 71524829 -110890413 - AluJb SINE Alu -7 305 1 22 0 0 0 chr6 71524875 71524897 -110890345 + AT_rich Low_complexity Low_complexity 1 22 0 315 277 99 43 chr6 71525140 71525422 -110889820 - L1MC/D LINE L1 -1481 4665 4368 1330 193 114 38 chr6 71525884 71526252 -110888990 - MSTD LTR MaLR 0 396 1 35 71 0 0 chr6 71526376 71526446 -110888796 + AT_rich Low_complexity Low_complexity 1 70 0 245 254 22 90 chr6 71526497 71526631 -110888611 + L1ME LINE L1 5558 5682 -439 184 305 17 0 chr6 71527166 71527225 -110888017 - MIR3 SINE MIR -24 184 125 1411 216 58 85 chr6 71530242 71530760 -110884482 + MLT1D LTR MaLR 2 505 0 28 29 0 0 chr6 71530880 71530915 -110884327 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 71531295 71531317 -110883925 + AT_rich Low_complexity Low_complexity 1 22 0 332 181 49 21 chr6 71531951 71532095 -110883147 + (TA)n Simple_repeat Simple_repeat 2 149 0 374 270 0 43 chr6 71532145 71532260 -110882982 + ORSL DNA AcHobo 166 275 0 315 0 0 0 chr6 71534032 71534067 -110881175 + (TG)n Simple_repeat Simple_repeat 2 36 0 499 209 26 45 chr6 71534352 71534517 -110880725 + MSTC LTR MaLR 1 162 -212 1151 148 42 0 chr6 71534525 71534741 -110880501 - L1MA4A LINE L1 -9 6294 6070 808 149 50 0 chr6 71534744 71534885 -110880357 + L1MA4A LINE L1 5825 5972 -331 579 319 16 0 chr6 71534900 71535085 -110880157 - MIR SINE MIR -73 189 2 362 255 70 80 chr6 71535342 71535542 -110879700 - L2 LINE L2 0 3313 3116 32 86 0 0 chr6 71536133 71536214 -110879028 + AT_rich Low_complexity Low_complexity 1 81 0 785 293 48 41 chr6 71538246 71538560 -110876682 - L2 LINE L2 -3 3310 2995 181 278 74 99 chr6 71538609 71538771 -110876471 - L2 LINE L2 -401 2913 2756 238 313 92 76 chr6 71538842 71539298 -110875944 - L2 LINE L2 -44 3269 2776 4589 165 92 10 chr6 71539304 71540362 -110874880 - Tigger3b DNA MER2_type -1 1230 29 682 333 64 40 chr6 71540366 71540868 -110874374 - L2 LINE L2 -549 2765 2252 290 339 143 39 chr6 71541775 71542335 -110872907 - L2 LINE L2 -709 2605 1988 1859 157 3 0 chr6 71543575 71543861 -110871381 + AluSx SINE Alu 7 293 -19 23 0 0 0 chr6 71543926 71543949 -110871293 + AT_rich Low_complexity Low_complexity 1 23 0 328 359 43 31 chr6 71544604 71544955 -110870287 + L1PA15-16 LINE L1 1192 1546 -5303 335 309 0 0 chr6 71544973 71545070 -110870172 + L1PA15-16 LINE L1 1473 1569 -5280 * 3819 248 52 27 chr6 71545051 71546442 -110868800 + L1PB4 LINE L1 1337 2850 -3999 337 234 42 0 chr6 71546698 71546865 -110868377 + (TA)n Simple_repeat Simple_repeat 2 175 0 11084 220 41 9 chr6 71546867 71550680 -110864562 + L1PB4 LINE L1 2918 6854 -5 757 326 101 14 chr6 71551281 71551779 -110863463 - L2 LINE L2 0 3313 2774 22 0 0 0 chr6 71552504 71552526 -110862716 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 71552564 71552588 -110862654 + AT_rich Low_complexity Low_complexity 1 24 0 237 33 0 0 chr6 71552666 71552696 -110862546 + (CA)n Simple_repeat Simple_repeat 2 31 0 300 247 34 22 chr6 71552735 71552824 -110862418 - LTR33A LTR ERVL 0 523 434 232 356 94 7 chr6 71552861 71553010 -110862232 - LTR50 LTR ERVL -164 631 470 * 272 271 49 83 chr6 71553001 71553145 -110862097 - LTR50 LTR ERVL -639 156 18 790 249 5 28 chr6 71554213 71554426 -110860816 - MER3 DNA MER1_type -1 208 1 24 32 0 0 chr6 71554621 71554652 -110860590 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr6 71554686 71554717 -110860525 + AT_rich Low_complexity Low_complexity 1 31 0 12568 167 32 13 chr6 71555103 71555617 -110859625 + Tigger1 DNA MER2_type 1 504 -1914 2466 68 3 0 chr6 71555617 71555927 -110859315 + AluY SINE Alu 1 311 0 12568 167 32 13 chr6 71555927 71557770 -110857472 + Tigger1 DNA MER2_type 504 2403 -15 24 0 0 0 chr6 71557940 71557964 -110857278 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr6 71558399 71558431 -110856811 + AT_rich Low_complexity Low_complexity 1 32 0 26 74 0 0 chr6 71558511 71558565 -110856677 + AT_rich Low_complexity Low_complexity 1 54 0 262 352 44 44 chr6 71559290 71559472 -110855770 - L2 LINE L2 -213 3100 2919 398 373 73 27 chr6 71559525 71559895 -110855347 - L2 LINE L2 -498 2816 2430 261 339 41 64 chr6 71560218 71560389 -110854853 + MLT1H LTR MaLR 153 319 -230 2085 121 41 39 chr6 71561402 71561765 -110853477 - THE1B LTR MaLR 0 364 1 235 294 0 71 chr6 71561998 71562083 -110853159 - L2 LINE L2 0 3272 3194 1748 150 51 0 chr6 71562101 71562375 -110852867 + THE1B LTR MaLR 77 364 0 10229 117 17 28 chr6 71562375 71563972 -110851270 + THE1B-int LTR MaLR 1 1579 -1 2348 108 37 0 chr6 71563973 71564324 -110850918 + THE1B LTR MaLR 1 364 0 388 265 29 15 chr6 71564749 71564885 -110850357 + L1MB7 LINE L1 9 146 -6396 1385 136 5 0 chr6 71564906 71565140 -110850102 + AluSg/x SINE Alu 83 317 0 365 353 82 33 chr6 71565168 71565534 -110849708 + L1MB7 LINE L1 191 574 -5968 1198 208 37 4 chr6 71565535 71565776 -110849466 + MER70A LTR ERVL 224 472 0 2977 229 52 124 chr6 71565795 71567172 -110848070 + L1MB7 LINE L1 3126 4310 -2334 2260 102 6 6 chr6 71567172 71567485 -110847757 + AluSq SINE Alu 1 313 0 2977 229 52 124 chr6 71567485 71568152 -110847090 + L1MB7 LINE L1 4310 5023 -1621 1898 238 47 15 chr6 71568150 71568680 -110846562 + L1MB7 LINE L1 5768 6314 -364 * 1278 120 21 0 chr6 71568691 71568882 -110846360 + AluSp SINE Alu 1 195 -118 406 224 192 20 chr6 71568906 71569102 -110846140 + L1MB7 LINE L1 6309 6542 -122 2991 206 34 27 chr6 71569106 71569836 -110845406 + L1MB4 LINE L1 5440 6174 -6 1324 219 166 109 chr6 71569889 71570776 -110844466 + L1M4 LINE L1 4081 5017 -1129 348 329 32 19 chr6 71570826 71570981 -110844261 - L2 LINE L2 -1259 2055 1899 223 388 107 18 chr6 71571408 71571802 -110843440 - L2 LINE L2 -1937 1377 949 694 88 10 0 chr6 71572687 71572789 -110842453 + L1PA13 LINE L1 6042 6144 -19 595 159 13 0 chr6 71572790 71572941 -110842301 + (TA)n Simple_repeat Simple_repeat 2 154 0 22 0 0 0 chr6 71573040 71573062 -110842180 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 71573405 71573426 -110841816 + AT_rich Low_complexity Low_complexity 1 21 0 876 122 112 5 chr6 71574263 71574451 -110840791 - L1MC3 LINE L1 -26 7759 7552 543 143 0 33 chr6 71574469 71574560 -110840682 - MLT1C LTR MaLR -379 88 1 536 161 189 21 chr6 71574561 71574704 -110840538 - L1MB8 LINE L1 -186 5992 5826 1562 192 62 39 chr6 71574718 71575155 -110840087 - L1M4b LINE L1 -5183 1676 1230 1050 350 35 20 chr6 71575707 71576198 -110839044 - L1M4b LINE L1 -5923 936 439 195 393 89 27 chr6 71576319 71576431 -110838811 - L2 LINE L2 -20 3252 3134 193 373 49 0 chr6 71577305 71577407 -110837835 + MIR SINE MIR 37 143 -65 23 68 0 0 chr6 71577784 71577828 -110837414 + AT_rich Low_complexity Low_complexity 1 44 0 1978 132 10 3 chr6 71578068 71578364 -110836878 + AluSg SINE Alu 1 298 -12 256 91 0 0 chr6 71579274 71579307 -110835935 + Alu SINE Alu 248 280 -22 180 0 0 0 chr6 71579307 71579327 -110835915 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 248 267 69 10 chr6 71579367 71579468 -110835774 + MIR SINE MIR 92 198 -64 31 26 0 0 chr6 71579983 71580021 -110835221 + AT_rich Low_complexity Low_complexity 1 38 0 250 346 87 0 chr6 71580162 71580266 -110834976 + MIR SINE MIR 31 143 -119 2374 88 0 0 chr6 71581711 71582006 -110833236 - AluY SINE Alu -16 295 1 4002 133 6 14 chr6 71582008 71582671 -110832571 - L1PA16 LINE L1 -2 6164 5507 27 62 0 0 chr6 71583270 71583318 -110831924 + AT_rich Low_complexity Low_complexity 1 48 0 3202 224 47 10 chr6 71583858 71584794 -110830448 - L1MB7 LINE L1 0 6184 5215 649 211 23 8 chr6 71584945 71585073 -110830169 - Tigger1 DNA MER2_type 0 2418 2289 842 281 66 31 chr6 71585090 71585439 -110829803 - L1M4b LINE L1 -6488 371 11 1087 168 20 25 chr6 71585444 71585646 -110829596 + AluJo SINE Alu 85 285 -27 2086 68 0 34 chr6 71586241 71586560 -110828682 - AluY SINE Alu 0 309 1 22 80 0 0 chr6 71587610 71587660 -110827582 + AT_rich Low_complexity Low_complexity 1 50 0 422 306 38 0 chr6 71587878 71588035 -110827207 - MIR SINE MIR -3 259 97 673 336 124 9 chr6 71588907 71589333 -110825909 + L2 LINE L2 2838 3312 -1 988 296 112 48 chr6 71590434 71591473 -110823769 + Charlie7 DNA MER1_type 4 1108 -1504 320 368 22 39 chr6 71591682 71591913 -110823329 - L2 LINE L2 -675 2639 2413 209 208 0 0 chr6 71592746 71592794 -110822448 + A-rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr6 71592988 71593022 -110822220 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr6 71593118 71593163 -110822079 + AT_rich Low_complexity Low_complexity 1 45 0 1618 253 86 39 chr6 71594123 71594945 -110820297 + L1MDb LINE L1 786 1606 -4800 3998 162 28 0 chr6 71596711 71598001 -110817241 + L1MA3 LINE L1 4584 5908 -397 7788 17 0 0 chr6 71598007 71599487 -110815755 - L1PA2 LINE L1 0 6155 4676 2062 182 15 0 chr6 71599487 71599888 -110815354 + L1MA3 LINE L1 5897 6304 -1 313 232 42 42 chr6 71600909 71601004 -110814238 + MLT1I LTR MaLR 113 207 -202 259 254 133 38 chr6 71601545 71601691 -110813551 + MIR3 SINE MIR 3 167 -41 2170 138 19 21 chr6 71601704 71602080 -110813162 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr6 71602370 71602391 -110812851 + AT_rich Low_complexity Low_complexity 1 21 0 231 143 61 0 chr6 71602978 71603027 -110812215 - LTR66 LTR ERVL -165 445 394 241 83 62 0 chr6 71604344 71604392 -110810850 + (ATATG)n Simple_repeat Simple_repeat 3 53 0 1758 179 0 0 chr6 71604797 71605088 -110810154 + AluJb SINE Alu 1 291 -21 333 0 0 0 chr6 71605442 71605479 -110809763 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr6 71605479 71605500 -110809742 + AT_rich Low_complexity Low_complexity 1 21 0 782 243 29 0 chr6 71605505 71605678 -110809564 + FAM SINE Alu 1 49 0 25 31 0 0 chr6 71606521 71606553 -110808689 + AT_rich Low_complexity Low_complexity 1 32 0 30 45 0 0 chr6 71606636 71606680 -110808562 + AT_rich Low_complexity Low_complexity 1 44 0 1043 169 73 23 chr6 71606783 71607002 -110808240 + L1PA16 LINE L1 5935 6164 -2 330 256 112 16 chr6 71607534 71607659 -110807583 + MIR SINE MIR 64 200 -62 216 345 59 17 chr6 71608090 71608209 -110807033 + L2 LINE L2 3179 3302 -11 318 67 0 0 chr6 71608210 71608255 -110806987 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 22 0 0 0 chr6 71608255 71608277 -110806965 + AT_rich Low_complexity Low_complexity 1 22 0 957 88 0 0 chr6 71608299 71608435 -110806807 - L1P LINE L1 -2348 3798 3663 294 235 0 0 chr6 71608626 71608728 -110806514 + (TA)n Simple_repeat Simple_repeat 2 103 0 189 0 0 0 chr6 71608728 71608749 -110806493 + (GA)n Simple_repeat Simple_repeat 2 22 0 207 344 16 0 chr6 71609238 71609299 -110805943 + MER5A DNA MER1_type 77 138 -51 231 36 0 0 chr6 71609504 71609532 -110805710 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 228 35 0 0 chr6 71609693 71609722 -110805520 + (CA)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr6 71610662 71610700 -110804542 + AT_rich Low_complexity Low_complexity 1 38 0 258 266 55 46 chr6 71610790 71610899 -110804343 - L3 LINE CR1 -412 1165 1056 180 77 0 0 chr6 71610990 71611016 -110804226 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1153 220 42 29 chr6 71611322 71611635 -110803607 - MLT1A1 LTR MaLR 0 365 49 2243 238 46 12 chr6 71611662 71612163 -110803079 - MLT1A1-int LTR MaLR 0 1735 1218 2309 241 56 10 chr6 71612232 71612826 -110802416 - MLT1A1-int LTR MaLR -1110 625 5 2225 187 90 39 chr6 71612834 71612867 -110802375 - MLT2B1 LTR ERVL -8 512 482 225 0 0 0 chr6 71612867 71612892 -110802350 + (TA)n Simple_repeat Simple_repeat 2 26 0 2225 187 90 39 chr6 71612892 71613314 -110801928 - MLT2B1 LTR ERVL -38 482 28 1901 166 0 3 chr6 71613314 71613621 -110801621 - AluSx SINE Alu -5 307 2 2225 187 90 39 chr6 71613621 71613651 -110801591 - MLT2B1 LTR ERVL -492 28 1 1132 290 44 12 chr6 71613669 71614043 -110801199 - ERVL LTR ERVL -5161 493 113 283 261 17 35 chr6 71614242 71614357 -110800885 - ERVL LTR ERVL -5650 114 2 1408 191 70 62 chr6 71614687 71615028 -110800214 - Tigger7 DNA MER2_type -389 344 1 9227 195 43 6 chr6 71615030 71615115 -110800127 + ERVL-B1 LTR ERVL 1885 1965 -3799 3409 87 106 4 chr6 71615115 71615655 -110799587 + LTR61 LTR ERV1 1 595 0 9227 195 43 6 chr6 71615655 71616648 -110798594 + ERVL-B1 LTR ERVL 1965 3055 -2709 234 0 0 0 chr6 71616648 71616674 -110798568 + (GA)n Simple_repeat Simple_repeat 1 26 0 9227 195 43 6 chr6 71616674 71617331 -110797911 + ERVL-B1 LTR ERVL 3055 3686 -2078 693 174 87 52 chr6 71617324 71617496 -110797746 + ERVL-B1 LTR ERVL 3822 3999 -1765 * 5551 196 59 19 chr6 71617484 71617715 -110797527 + ERVL-B1 LTR ERVL 4291 4511 -1253 239 53 0 26 chr6 71617715 71617753 -110797489 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 5551 196 59 19 chr6 71617753 71618729 -110796513 + ERVL-B1 LTR ERVL 4511 5546 -218 1247 199 21 101 chr6 71618742 71618891 -110796351 + MLT1A1 LTR MaLR 14 173 -192 2139 114 7 0 chr6 71618891 71619181 -110796061 + AluSc SINE Alu 1 292 -17 1247 199 21 101 chr6 71619181 71619407 -110795835 + MLT1A1 LTR MaLR 173 359 -6 1036 191 47 5 chr6 71619411 71619626 -110795616 + ERVL-B1 LTR ERVL 5541 5764 0 261 214 43 29 chr6 71619626 71619696 -110795546 + MLT2B1 LTR ERVL 14 84 -330 742 220 61 79 chr6 71619705 71619755 -110795487 + MLT2B1 LTR ERVL 209 258 -262 362 21 0 21 chr6 71619755 71619803 -110795439 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 742 220 61 79 chr6 71619803 71620029 -110795213 + MLT2B1 LTR ERVL 258 480 -40 202 108 68 0 chr6 71620042 71620116 -110795126 + (TA)n Simple_repeat Simple_repeat 2 80 0 352 39 78 0 chr6 71620133 71620184 -110795058 + MLT2B1 LTR ERVL 466 520 0 1759 157 10 10 chr6 71620645 71620939 -110794303 + AluSx SINE Alu 1 294 -18 533 320 60 42 chr6 71620962 71621293 -110793949 + L2 LINE L2 2914 3250 -63 206 225 0 0 chr6 71621373 71621413 -110793829 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 2093 121 0 55 chr6 71622474 71622804 -110792438 + AluSx SINE Alu 1 312 0 467 130 14 0 chr6 71623655 71623741 -110791501 - L1M4 LINE L1 -393 5785 5698 1309 195 29 32 chr6 71623747 71624091 -110791151 + L1MA7 LINE L1 5923 6265 -26 32 0 0 0 chr6 71625006 71625038 -110790204 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr6 71625223 71625259 -110789983 + AT_rich Low_complexity Low_complexity 1 36 0 196 313 0 0 chr6 71628104 71628152 -110787090 + L2 LINE L2 2995 3042 -230 316 239 89 35 chr6 71630606 71630865 -110784377 + L1MEc LINE L1 2023 2295 -4101 313 311 102 78 chr6 71631635 71632123 -110783119 + L1MEc LINE L1 2854 3353 -2862 288 316 52 28 chr6 71632620 71632832 -110782410 + L1MEc LINE L1 4092 4308 -1907 235 282 28 42 chr6 71632963 71633105 -110782137 + L1M2 LINE L1 5423 5562 -729 410 263 173 0 chr6 71635379 71635535 -110779707 + MER5A DNA MER1_type 7 189 0 251 273 11 23 chr6 71635706 71635794 -110779448 + GA-rich Low_complexity Low_complexity 1 87 0 583 298 53 0 chr6 71636602 71636790 -110778452 - MARNA DNA Mariner -16 570 373 206 218 18 18 chr6 71638156 71638188 -110777054 + (TA)n Simple_repeat Simple_repeat 2 36 -20 462 117 0 13 chr6 71638188 71638265 -110776977 - MADE1 DNA Mariner 0 80 5 206 218 18 18 chr6 71638265 71638287 -110776955 + (TA)n Simple_repeat Simple_repeat 35 56 0 23 68 0 0 chr6 71638359 71638403 -110776839 + AT_rich Low_complexity Low_complexity 1 44 0 27 73 0 0 chr6 71638827 71638882 -110776360 + AT_rich Low_complexity Low_complexity 1 55 0 27 0 0 0 chr6 71640462 71640489 -110774753 + AT_rich Low_complexity Low_complexity 1 27 0 311 323 101 37 chr6 71640513 71640841 -110774401 - L1MC4a LINE L1 -1903 5905 5557 656 256 126 63 chr6 71641464 71642100 -110773142 - HAL1 LINE L1 -128 2379 1704 339 329 58 50 chr6 71642238 71642478 -110772764 - HAL1 LINE L1 -1557 950 709 261 298 133 13 chr6 71642695 71642846 -110772396 - HAL1 LINE L1 -2117 390 222 1110 73 0 0 chr6 71642952 71643088 -110772154 + AluY SINE Alu 1 136 -175 183 42 0 0 chr6 71644740 71644764 -110770478 + (ATG)n Simple_repeat Simple_repeat 2 25 0 1456 76 0 0 chr6 71648416 71648601 -110766641 + AluY SINE Alu 127 311 0 665 322 121 39 chr6 71648607 71649268 -110765974 - L1MEc LINE L1 -5627 769 55 1883 120 11 18 chr6 71649704 71650015 -110765227 - AluSx SINE Alu 0 309 1 212 309 74 0 chr6 71651374 71651455 -110763787 + MIR SINE MIR 48 134 -128 * 515 323 107 18 chr6 71651446 71651783 -110763459 + L2 LINE L2 2398 2764 -550 2127 114 0 0 chr6 71651800 71652081 -110763161 + AluSx SINE Alu 1 281 -31 201 39 0 0 chr6 71652083 71652109 -110763133 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 442 186 18 88 chr6 71652132 71652245 -110762997 + MLT1F LTR MaLR 2 106 -436 610 262 124 68 chr6 71652280 71652768 -110762474 + L2 LINE L2 2771 3309 -4 360 47 0 0 chr6 71652841 71652884 -110762358 - U2 snRNA snRNA -145 43 1 29 0 0 0 chr6 71653299 71653328 -110761914 + AT_rich Low_complexity Low_complexity 1 29 0 667 186 38 38 chr6 71653562 71653745 -110761497 + MER53 DNA DNA 4 186 -3 488 200 127 67 chr6 71654111 71654276 -110760966 + MER69A DNA AcHobo 1 175 -2 2469 250 35 92 chr6 71654911 71656197 -110759045 + L2 LINE L2 2116 3312 -1 432 0 0 0 chr6 71656300 71656348 -110758894 + (TG)n Simple_repeat Simple_repeat 2 49 0 2013 255 64 45 chr6 71657029 71658227 -110757015 - L1ME3A LINE L1 -10 6160 4927 3725 58 2 0 chr6 71658227 71658695 -110756547 - L1PA7 LINE L1 -8 6146 5678 2013 255 64 45 chr6 71658695 71658729 -110756513 - L1ME3A LINE L1 -1243 4927 4895 24 53 0 0 chr6 71658751 71658789 -110756453 + AT_rich Low_complexity Low_complexity 1 38 0 1181 199 66 15 chr6 71659246 71659517 -110755725 - MLT1F1 LTR MaLR -7 560 276 546 91 0 0 chr6 71659517 71659594 -110755648 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2247 100 0 0 chr6 71659594 71659905 -110755337 - AluY SINE Alu 0 311 1 216 171 0 0 chr6 71660018 71660059 -110755183 + GA-rich Low_complexity Low_complexity 2 42 0 634 256 16 52 chr6 71660061 71660252 -110754990 - MLT1F1 LTR MaLR -357 185 2 366 92 92 0 chr6 71660262 71660392 -110754850 + (TA)n Simple_repeat Simple_repeat 1 142 0 1867 150 0 0 chr6 71660392 71660678 -110754564 - AluSx SINE Alu -24 288 3 1876 129 0 68 chr6 71660815 71661126 -110754116 + AluSx SINE Alu 1 290 -22 28 0 0 0 chr6 71661126 71661154 -110754088 + AT_rich Low_complexity Low_complexity 1 28 0 276 159 0 0 chr6 71661381 71661425 -110753817 + L2 LINE L2 3268 3311 -2 233 311 0 0 chr6 71662416 71662477 -110752765 + LTR16A LTR ERVL 73 133 -317 543 281 100 5 chr6 71662608 71662818 -110752424 + LTR16A LTR ERVL 214 443 -7 204 400 86 17 chr6 71662907 71663324 -110751918 - L2 LINE L2 -568 2746 2301 307 273 211 6 chr6 71663364 71663525 -110751717 + MER91A DNA MER1_type 3 196 0 202 267 0 0 chr6 71663658 71663703 -110751539 + MIR SINE MIR 93 137 -71 2298 91 0 7 chr6 71664255 71664563 -110750679 + AluSc SINE Alu 4 309 0 422 301 38 0 chr6 71665268 71665401 -110749841 - MIR SINE MIR -51 211 74 789 254 155 33 chr6 71665403 71666104 -110749138 + L2 LINE L2 2518 3311 -2 181 163 82 82 chr6 71666302 71666351 -110748891 - L3b LINE CR1 -156 1427 1379 213 239 239 44 chr6 71666429 71666542 -110748700 + MIR SINE MIR 19 153 -109 227 187 11 33 chr6 71666889 71666980 -110748262 + CT-rich Low_complexity Low_complexity 3 91 0 28 0 0 0 chr6 71667046 71667074 -110748168 + AT_rich Low_complexity Low_complexity 1 28 0 341 336 40 13 chr6 71667102 71667251 -110747991 - MIR SINE MIR -58 204 52 256 235 12 12 chr6 71668109 71668190 -110747052 + (TA)n Simple_repeat Simple_repeat 2 82 0 623 297 87 34 chr6 71668328 71668800 -110746442 - L1M4 LINE L1 -1527 4855 4359 1223 312 72 20 chr6 71669328 71670026 -110745216 - MER20B DNA MER1_type -49 734 1 24 53 0 0 chr6 71670107 71670145 -110745097 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr6 71670352 71670382 -110744860 + AT_rich Low_complexity Low_complexity 1 30 0 25 75 0 0 chr6 71670468 71670521 -110744721 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr6 71670776 71670802 -110744440 + AT_rich Low_complexity Low_complexity 1 26 0 245 267 69 38 chr6 71672538 71672669 -110742573 - L1P LINE L1 -1120 5026 4892 21 57 0 0 chr6 71672864 71672899 -110742343 + AT_rich Low_complexity Low_complexity 1 35 0 316 284 98 82 chr6 71672907 71673273 -110741969 - L1M4 LINE L1 -1515 4631 4260 1324 192 21 4 chr6 71673492 71673773 -110741469 - L1MB8 LINE L1 -272 5906 5621 3201 227 81 105 chr6 71673812 71675463 -110739779 - L1M4 LINE L1 -2089 4293 2691 198 103 0 0 chr6 71675463 71675492 -110739750 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 3201 227 81 105 chr6 71675492 71675723 -110739519 - L1M4 LINE L1 -3691 2691 2456 405 325 31 26 chr6 71675745 71675939 -110739303 - L1M4 LINE L1 -3900 2484 2290 1686 187 0 25 chr6 71675992 71676308 -110738934 - AluJo SINE Alu -4 308 1 3222 196 16 24 chr6 71676946 71677568 -110737674 + LTR51 LTR ERV1 1 619 -52 1895 148 141 11 chr6 71677568 71677945 -110737297 + MSTA LTR MaLR 3 428 0 3222 196 16 24 chr6 71677945 71677997 -110737245 + LTR51 LTR ERV1 619 670 -1 221 197 16 0 chr6 71678165 71678226 -110737016 + (TA)n Simple_repeat Simple_repeat 2 63 0 433 222 16 8 chr6 71678389 71678515 -110736727 + LTR37A LTR ERV1 291 417 -9 263 273 26 0 chr6 71678993 71679070 -110736172 + LTR49-int LTR ERV1 2891 2969 -3362 29 28 0 0 chr6 71679551 71679587 -110735655 + AT_rich Low_complexity Low_complexity 1 36 0 249 254 51 0 chr6 71680236 71680295 -110734947 + Tigger2 DNA MER2_type 2657 2718 0 27 49 0 0 chr6 71680295 71680336 -110734906 + AT_rich Low_complexity Low_complexity 1 41 0 293 273 196 7 chr6 71680920 71681063 -110734179 - MER67D LTR ERV1 0 514 345 1851 157 47 0 chr6 71681066 71681384 -110733858 + MER44D DNA MER2_type 1 603 -6 902 201 14 104 chr6 71681486 71681764 -110733478 - MER67D LTR ERV1 -258 256 4 1287 241 70 8 chr6 71682189 71682559 -110732683 + MER110 LTR ERV1 84 476 -15 22 80 0 0 chr6 71685189 71685239 -110730003 + AT_rich Low_complexity Low_complexity 1 50 0 32 26 0 0 chr6 71685334 71685373 -110729869 + AT_rich Low_complexity Low_complexity 1 39 0 315 333 29 35 chr6 71686357 71686531 -110728711 + L1MCa LINE L1 904 1076 -5350 240 254 42 0 chr6 71687004 71687075 -110728167 + L1MCa LINE L1 1283 1356 -5251 439 329 19 16 chr6 71687109 71687416 -110727826 - L1M4 LINE L1 -2489 3657 3350 564 282 115 73 chr6 71687840 71688598 -110726644 + HAL1 LINE L1 694 1483 -1024 418 317 140 16 chr6 71688695 71689124 -110726118 - L1MC/D LINE L1 -2062 5746 5265 6592 142 19 8 chr6 71689320 71690663 -110724579 - L1MA3 LINE L1 -1 6304 4943 411 343 60 55 chr6 71690663 71691193 -110724049 - L1MC/D LINE L1 -1065 5081 4549 701 178 16 4 chr6 71691278 71691417 -110723825 - L1MA8 LINE L1 -15 6288 6140 406 271 8 0 chr6 71691415 71691548 -110723694 + L1M1 LINE L1 3041 3174 -4391 * 525 297 61 18 chr6 71693483 71693648 -110721594 - MER5B DNA MER1_type -6 172 1 195 335 55 102 chr6 71694652 71695052 -110720190 + L2 LINE L2 2933 3313 0 26 39 0 20 chr6 71696259 71696272 -110718970 + AT_rich Low_complexity Low_complexity 1 13 -37 2052 128 0 25 chr6 71696272 71696592 -110718650 + AluSx SINE Alu 1 312 0 26 39 0 20 chr6 71696592 71696629 -110718613 + AT_rich Low_complexity Low_complexity 13 50 0 246 189 19 0 chr6 71696924 71696977 -110718265 - L1PB2 LINE L1 -118 6033 5980 823 108 16 0 chr6 71696977 71697106 -110718136 + L1PB2 LINE L1 6019 6149 -2 3245 154 6 40 chr6 71697137 71697939 -110717303 + L1PB4 LINE L1 5068 5845 -311 29 0 0 0 chr6 71699884 71699913 -110715329 + AT_rich Low_complexity Low_complexity 1 29 0 401 218 59 30 chr6 71700111 71700212 -110715030 - MER81 DNA DNA 0 114 11 360 0 0 0 chr6 71700338 71700378 -110714864 + (TG)n Simple_repeat Simple_repeat 2 41 0 32 57 0 0 chr6 71702069 71702122 -110713120 + AT_rich Low_complexity Low_complexity 1 53 0 203 358 73 0 chr6 71702394 71702503 -110712739 - L2 LINE L2 -8 3264 3148 2288 51 0 7 chr6 71702820 71703115 -110712127 + L1PA4 LINE L1 5863 6155 0 1357 216 14 11 chr6 71703179 71703515 -110711727 - AluJb SINE Alu 0 341 5 255 226 0 0 chr6 71704188 71704241 -110711001 + MER4-int LTR ERV1 1110 1162 -5436 403 218 35 0 chr6 71704243 71704385 -110710857 + (TA)n Simple_repeat Simple_repeat 1 147 0 22 70 0 0 chr6 71705570 71705613 -110709629 + AT_rich Low_complexity Low_complexity 1 43 0 269 256 33 44 chr6 71707786 71707876 -110707366 - MER94 DNA DNA -32 102 14 1792 235 36 32 chr6 71708373 71708876 -110706366 - MLT1D LTR MaLR 0 505 1 22 80 0 0 chr6 71709130 71709180 -110706062 + AT_rich Low_complexity Low_complexity 1 50 0 2657 99 0 18 chr6 71709649 71710031 -110705211 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr6 71710392 71710415 -110704827 + AT_rich Low_complexity Low_complexity 1 23 0 480 50 38 0 chr6 71711004 71711084 -110704158 + (TA)n Simple_repeat Simple_repeat 1 83 0 949 267 5 0 chr6 71711374 71711580 -110703662 - MER20 DNA MER1_type -1 218 12 218 114 0 45 chr6 71711929 71711973 -110703269 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 1014 231 51 51 chr6 71711981 71712276 -110702966 - AluJo SINE Alu 0 312 18 1536 190 48 21 chr6 71712803 71713134 -110702108 - MER2 DNA MER2_type -5 340 1 272 401 55 18 chr6 71713142 71713359 -110701883 - L2 LINE L2 -243 3070 2846 429 20 0 0 chr6 71713431 71713481 -110701761 + (TC)n Simple_repeat Simple_repeat 2 51 0 333 0 0 0 chr6 71713480 71713517 -110701725 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 225 146 0 0 chr6 71713538 71713586 -110701656 + (GA)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr6 71714083 71714111 -110701131 + AT_rich Low_complexity Low_complexity 1 28 0 246 273 112 12 chr6 71715363 71715605 -110699637 - L1ME LINE L1 -239 5882 5617 16238 137 16 23 chr6 71715824 71719762 -110695480 + L1PA8 LINE L1 7 3923 -2538 6932 62 1 1 chr6 71719764 71720781 -110694461 + L1PA7 LINE L1 5134 6150 -4 24 0 0 0 chr6 71720791 71720815 -110694427 + AT_rich Low_complexity Low_complexity 1 24 0 11996 107 8 2 chr6 71720821 71723377 -110691865 + L1PA8 LINE L1 3921 6478 -9 22 56 0 0 chr6 71723564 71723600 -110691642 + AT_rich Low_complexity Low_complexity 1 36 0 767 261 121 74 chr6 71723839 71724196 -110691046 - L1ME LINE L1 -969 5177 4838 414 0 0 0 chr6 71724196 71724242 -110691000 + (TG)n Simple_repeat Simple_repeat 1 46 0 767 261 121 74 chr6 71724242 71724266 -110690976 - L1ME LINE L1 -1308 4838 4817 3211 103 13 0 chr6 71724266 71724713 -110690529 - MLT2A2 LTR ERVL 0 453 1 767 261 121 74 chr6 71724713 71725220 -110690022 - L1ME LINE L1 -1329 4817 4246 28 29 0 0 chr6 71725447 71725482 -110689760 + AT_rich Low_complexity Low_complexity 1 35 0 302 281 60 54 chr6 71727220 71727387 -110687855 - MIR SINE MIR 0 262 95 767 107 0 0 chr6 71728032 71728144 -110687098 + L1PA13 LINE L1 6033 6144 -19 22 35 0 0 chr6 71728736 71728765 -110686477 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr6 71729104 71729139 -110686103 + AT_rich Low_complexity Low_complexity 1 35 0 38 96 0 0 chr6 71729210 71729325 -110685917 + AT_rich Low_complexity Low_complexity 1 115 0 424 322 95 29 chr6 71730020 71730503 -110684739 - L2 LINE L2 -81 3232 2714 1095 342 60 25 chr6 71730564 71731223 -110684019 + L2 LINE L2 2381 3057 -256 404 356 32 0 chr6 71731242 71731430 -110683812 - L2 LINE L2 -660 2654 2461 841 335 89 49 chr6 71731553 71732340 -110682902 - L2 LINE L2 -2173 1141 316 1390 203 29 29 chr6 71732340 71732651 -110682591 + AluJo SINE Alu 1 311 -1 841 335 89 49 chr6 71732651 71732717 -110682525 - L2 LINE L2 -2998 316 254 9585 35 5 0 chr6 71733139 71735070 -110680172 + L1PA3 LINE L1 4219 6155 0 31 58 0 0 chr6 71735236 71735288 -110679954 + AT_rich Low_complexity Low_complexity 1 52 0 246 128 0 0 chr6 71735950 71735989 -110679253 + (TG)n Simple_repeat Simple_repeat 1 39 0 298 301 97 9 chr6 71736345 71736458 -110678784 + L2 LINE L2 53 175 -3139 340 359 153 14 chr6 71736483 71736778 -110678464 + L2 LINE L2 323 658 -2656 2253 91 3 0 chr6 71736815 71737100 -110678142 - AluSp SINE Alu -26 287 2 1871 215 74 32 chr6 71737123 71737387 -110677855 - L1MA9 LINE L1 0 6312 6061 1065 141 16 0 chr6 71737387 71737572 -110677670 - L1MA4A LINE L1 0 6303 6116 1871 215 74 32 chr6 71737572 71737832 -110677410 - L1MA9 LINE L1 -251 6061 5766 444 255 10 60 chr6 71737663 71737863 -110677379 - L1PA16 LINE L1 -238 5928 5739 * 884 323 152 38 chr6 71737865 71738680 -110676562 + L2 LINE L2 678 1585 -1729 207 292 132 21 chr6 71738752 71738896 -110676346 + L2 LINE L2 2043 2202 -1112 4962 138 14 9 chr6 71738931 71739322 -110675920 - L1PB4 LINE L1 0 6156 5768 432 0 0 0 chr6 71739322 71739370 -110675872 + (TG)n Simple_repeat Simple_repeat 2 49 0 4962 138 14 9 chr6 71739370 71739962 -110675280 - L1PB4 LINE L1 -388 5768 5187 1552 227 46 12 chr6 71739962 71740394 -110674848 + L1PB4 LINE L1 4730 5176 -970 963 263 71 88 chr6 71740394 71740916 -110674326 + L2 LINE L2 2195 2707 -607 22 35 0 0 chr6 71741029 71741058 -110674184 + AT_rich Low_complexity Low_complexity 1 29 0 287 304 11 0 chr6 71741449 71741541 -110673701 - MLT1K LTR MaLR -17 571 479 486 308 50 16 chr6 71742678 71742860 -110672382 + MER5A DNA MER1_type 2 189 0 22 0 0 0 chr6 71742934 71742956 -110672286 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr6 71743831 71743887 -110671355 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr6 71744022 71744044 -110671198 + AT_rich Low_complexity Low_complexity 1 22 0 919 277 169 17 chr6 71744471 71744952 -110670290 + MLT1G1 LTR MaLR 1 523 -32 198 143 0 0 chr6 71745144 71745179 -110670063 + (CAT)n Simple_repeat Simple_repeat 2 36 0 1463 215 94 67 chr6 71745652 71746135 -110669107 - MLT1D LTR MaLR 0 626 27 27 0 0 0 chr6 71746135 71746162 -110669080 + AT_rich Low_complexity Low_complexity 1 27 0 2041 236 61 79 chr6 71747234 71748818 -110666424 - L1ME1 LINE L1 -7 6159 4536 10883 58 3 1 chr6 71748929 71750631 -110664611 - L1P1 LINE L1 -461 5694 3990 1097 172 1 1 chr6 71750734 71752954 -110662288 + ALR/Alpha Satellite centromeric 1 2221 0 26257 50 1 1 chr6 71753059 71756394 -110658848 + L1P LINE L1 1474 4808 -1338 858 162 0 0 chr6 71756506 71756685 -110658557 + (CATTC)n Simple_repeat Simple_repeat 2 180 0 226 114 0 0 chr6 71756685 71756720 -110658522 + (CACTC)n Simple_repeat Simple_repeat 1 35 0 846 171 6 3 chr6 71756727 71757072 -110658170 + (CATTC)n Satellite Satellite 1 345 0 702 180 0 0 chr6 71757118 71757296 -110657946 + (CATTC)n Satellite Satellite 3 180 0 962 155 0 12 chr6 71757321 71757642 -110657600 + (CATTC)n Satellite Satellite 1 318 0 286 119 0 0 chr6 71757660 71757702 -110657540 + (CATTC)n Satellite Satellite 4 45 0 705 185 0 0 chr6 71757707 71757885 -110657357 + (CACTC)n Simple_repeat Simple_repeat 1 178 0 573 227 0 0 chr6 71757847 71758019 -110657223 + (CATTC)n Satellite Satellite 1 172 0 * 200 128 0 43 chr6 71758023 71758070 -110657172 + HSATII Satellite Satellite 47 91 -79 993 123 0 0 chr6 71758073 71758252 -110656990 + (CATTC)n Satellite Satellite 2 180 0 674 171 6 0 chr6 71758270 71758446 -110656796 + (CATTC)n Satellite Satellite 4 180 0 205 240 0 0 chr6 71758459 71758509 -110656733 + (CACTC)n Simple_repeat Simple_repeat 4 53 0 654 193 0 0 chr6 71758512 71758683 -110656559 + (CATTC)n Satellite Satellite 2 172 0 1407 144 2 0 chr6 71758701 71759174 -110656068 + (CATTC)n Satellite Satellite 1 474 0 984 151 0 0 chr6 71759201 71759560 -110655682 + (CATTC)n Satellite Satellite 1 359 0 879 161 0 0 chr6 71759550 71759910 -110655332 + (CACTC)n Simple_repeat Simple_repeat 1 360 0 * 405 206 0 0 chr6 71759929 71760026 -110655216 + (CACTC)n Simple_repeat Simple_repeat 5 101 0 885 184 0 13 chr6 71760030 71760342 -110654900 + (CATTC)n Satellite Satellite 1 309 0 827 143 0 28 chr6 71760353 71760535 -110654707 + (CATTC)n Satellite Satellite 4 180 0 782 176 4 0 chr6 71760556 71761282 -110653960 + (CATTC)n Satellite Satellite 1 729 0 942 160 4 0 chr6 71761401 71762130 -110653112 + (CATTC)n Satellite Satellite 1 732 0 957 170 2 2 chr6 71762152 71763306 -110651936 + (CATTC)n Satellite Satellite 1 1154 0 486 207 0 0 chr6 71763331 71763510 -110651732 + (CATTC)n Satellite Satellite 1 179 0 864 152 3 0 chr6 71763521 71763880 -110651362 + (CATTC)n Satellite Satellite 1 360 0 873 145 0 0 chr6 71763921 71764100 -110651142 + (CATTC)n Satellite Satellite 2 180 0 756 156 0 0 chr6 71764135 71764315 -110650927 + (CATTC)n Satellite Satellite 1 180 0 936 162 1 6 chr6 71764397 71765347 -110649895 + (CATTC)n Satellite Satellite 1 944 0 935 184 2 8 chr6 71765401 71766058 -110649184 + (CATTC)n Satellite Satellite 1 653 0 948 146 0 1 chr6 71766079 71766979 -110648263 + (CATTC)n Satellite Satellite 1 898 0 717 179 0 0 chr6 71767016 71767270 -110647972 + (CATTC)n Satellite Satellite 1 254 0 894 165 5 0 chr6 71767319 71767707 -110647535 + (CATTC)n Satellite Satellite 1 390 0 828 195 0 0 chr6 71767839 71768188 -110647054 + (GAATG)n Satellite Satellite 1 349 0 597 194 0 0 chr6 71768204 71768384 -110646858 + (GAATG)n Satellite Satellite 1 180 0 846 146 0 0 chr6 71768395 71768566 -110646676 + (GAATG)n Satellite Satellite 4 174 0 792 159 0 0 chr6 71768610 71768786 -110646456 + (GAATG)n Satellite Satellite 4 179 0 732 163 0 0 chr6 71768819 71768991 -110646251 + (GAATG)n Satellite Satellite 4 175 0 438 163 0 0 chr6 71769024 71769122 -110646120 + (GAATG)n Satellite Satellite 3 100 0 696 178 0 0 chr6 71769159 71769339 -110645903 + (GAATG)n Satellite Satellite 1 180 0 315 135 11 34 chr6 71769374 71769463 -110645779 + (GAATG)n Satellite Satellite 4 90 0 672 178 0 0 chr6 71769601 71769781 -110645461 + (CATTC)n Satellite Satellite 1 180 0 762 167 0 0 chr6 71769801 71769981 -110645261 + (CATTC)n Satellite Satellite 1 180 0 882 148 4 1 chr6 71770007 71770739 -110644503 + (CATTC)n Satellite Satellite 1 734 0 795 155 0 0 chr6 71770775 71770949 -110644293 + (CATTC)n Satellite Satellite 2 175 0 282 185 0 0 chr6 71770982 71771063 -110644179 + (CATTC)n Satellite Satellite 4 84 0 534 207 0 0 chr6 71771085 71771264 -110643978 + (CATTC)n Satellite Satellite 2 180 0 894 143 0 0 chr6 71771279 71771454 -110643788 + (CATTC)n Satellite Satellite 1 175 0 657 154 0 0 chr6 71771491 71771634 -110643608 + (CATTC)n Satellite Satellite 3 145 0 786 157 0 0 chr6 71771675 71771853 -110643389 + (CATTC)n Satellite Satellite 2 179 0 378 170 0 0 chr6 71771877 71771971 -110643271 + (CATTC)n Satellite Satellite 4 97 0 882 179 0 0 chr6 71771985 71772404 -110642838 + (CATTC)n Satellite Satellite 1 419 0 384 215 0 0 chr6 71772456 71772614 -110642628 + (CATTC)n Satellite Satellite 3 160 0 990 154 0 0 chr6 71772644 71773292 -110641950 + (CATTC)n Satellite Satellite 1 648 0 372 165 0 0 chr6 71773317 71773408 -110641834 + (CATTC)n Satellite Satellite 4 94 0 684 162 0 0 chr6 71773497 71773664 -110641578 + (CATTC)n Satellite Satellite 4 170 0 756 184 0 0 chr6 71773705 71774064 -110641178 + (CATTC)n Satellite Satellite 1 359 0 837 177 0 0 chr6 71774092 71774410 -110640832 + (CATTC)n Satellite Satellite 1 318 0 870 151 0 0 chr6 71774426 71774659 -110640583 + (CATTC)n Satellite Satellite 1 233 0 229 188 0 0 chr6 71774661 71774709 -110640533 + (CACTC)n Simple_repeat Simple_repeat 3 50 0 942 139 3 16 chr6 71774719 71775078 -110640164 + (CATTC)n Satellite Satellite 1 355 0 783 178 0 0 chr6 71775041 71775215 -110640027 + (CACTC)n Simple_repeat Simple_repeat 4 177 0 * 276 229 0 0 chr6 71775229 71775312 -110639930 + (CTATT)n Simple_repeat Simple_repeat 3 85 0 1050 140 0 1 chr6 71775328 71776007 -110639235 + (CATTC)n Satellite Satellite 1 677 0 903 170 2 0 chr6 71776033 71776546 -110638696 + (CATTC)n Satellite Satellite 1 514 0 993 152 0 0 chr6 71776562 71777053 -110638189 + (CATTC)n Satellite Satellite 1 491 0 804 143 0 0 chr6 71777153 71777321 -110637921 + (GAATG)n Satellite Satellite 2 169 0 576 195 0 0 chr6 71777335 71777509 -110637733 + (GAATG)n Satellite Satellite 4 177 0 876 156 0 0 chr6 71777542 71778162 -110637080 + (GAATG)n Satellite Satellite 1 620 0 663 182 0 0 chr6 71778180 71778416 -110636826 + (GAATG)n Satellite Satellite 1 236 0 818 160 0 0 chr6 71778465 71778895 -110636347 + (GAATG)n Satellite Satellite 1 430 0 381 198 0 0 chr6 71778960 71779076 -110636166 + (GAATG)n Satellite Satellite 5 120 0 1004 163 4 5 chr6 71779110 71779855 -110635387 + (GAATG)n Satellite Satellite 4 919 0 930 143 1 6 chr6 71779920 71780535 -110634707 + (GAATG)n Satellite Satellite 3 789 0 647 146 0 30 chr6 71780613 71780777 -110634465 + (GAATG)n Satellite Satellite 2 160 0 765 163 0 0 chr6 71780788 71780966 -110634276 + (GAATG)n Satellite Satellite 3 180 0 858 160 0 0 chr6 71781009 71781281 -110633961 + (GAATG)n Satellite Satellite 1 272 0 606 193 0 0 chr6 71781293 71781454 -110633788 + (GAATG)n Satellite Satellite 4 164 0 432 156 0 0 chr6 71781488 71781578 -110633664 + (GAATG)n Satellite Satellite 5 94 0 828 173 0 0 chr6 71781713 71781892 -110633350 + (GAATG)n Satellite Satellite 2 180 0 807 186 0 0 chr6 71781940 71782281 -110632961 + (GAATG)n Satellite Satellite 1 341 0 993 193 0 0 chr6 71782282 71782567 -110632675 + (GAGTG)n Simple_repeat Simple_repeat 1 285 0 1071 167 0 0 chr6 71782567 71783059 -110632183 + (GAATG)n Satellite Satellite 1 492 0 765 176 0 0 chr6 71783102 71783324 -110631918 + (GAGTG)n Simple_repeat Simple_repeat 1 222 0 837 140 0 0 chr6 71783328 71783492 -110631750 + (GAATG)n Satellite Satellite 1 164 0 217 49 0 49 chr6 71783506 71783547 -110631695 - HSATII Satellite Satellite -86 84 46 657 208 0 0 chr6 71783590 71783758 -110631484 + (GAATG)n Satellite Satellite 5 172 0 972 133 0 0 chr6 71783770 71783877 -110631365 + (GAGTG)n Simple_repeat Simple_repeat 1 287 0 972 133 0 0 chr6 71783877 71784057 -110631185 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 606 165 6 33 chr6 71784282 71784464 -110630778 + (GAATG)n Satellite Satellite 4 180 0 801 167 0 0 chr6 71784497 71784813 -110630429 + (GAATG)n Satellite Satellite 1 316 0 786 162 0 0 chr6 71784837 71785318 -110629924 + (GAATG)n Satellite Satellite 1 481 0 918 151 3 3 chr6 71785332 71785686 -110629556 + (GAATG)n Satellite Satellite 1 354 0 891 168 0 0 chr6 71785756 71786078 -110629164 + (GAATG)n Satellite Satellite 1 322 0 633 190 0 0 chr6 71786126 71786305 -110628937 + (GAATG)n Satellite Satellite 1 179 0 1276 107 6 1 chr6 71786345 71786870 -110628372 + (GAATG)n Satellite Satellite 1 706 0 696 159 0 0 chr6 71786911 71787068 -110628174 + (GAATG)n Satellite Satellite 4 160 0 525 139 0 0 chr6 71787106 71787214 -110628028 + (GAATG)n Satellite Satellite 3 110 0 605 151 0 29 chr6 71787251 71787423 -110627819 + (GAATG)n Satellite Satellite 4 170 0 458 96 0 12 chr6 71787487 71787570 -110627672 + (GAATG)n Satellite Satellite 3 84 0 891 167 2 0 chr6 71787607 71788116 -110627126 + (GAATG)n Satellite Satellite 1 510 0 813 176 0 9 chr6 71788141 71788673 -110626569 + (GAATG)n Satellite Satellite 1 526 0 204 163 0 0 chr6 71788779 71788822 -110626420 + (CACTC)n Simple_repeat Simple_repeat 2 44 0 663 196 0 0 chr6 71788862 71789035 -110626207 + (CATTC)n Satellite Satellite 5 177 0 206 77 77 0 chr6 71789044 71789083 -110626159 + HSATII Satellite Satellite 47 88 -82 944 124 6 0 chr6 71789089 71789267 -110625975 + (CATTC)n Satellite Satellite 2 180 0 818 165 4 0 chr6 71789270 71789528 -110625714 + (CACTC)n Simple_repeat Simple_repeat 1 259 0 915 189 1 0 chr6 71789528 71790260 -110624982 + (CATTC)n Satellite Satellite 1 733 0 277 204 0 0 chr6 71790260 71790314 -110624928 + (CACTC)n Simple_repeat Simple_repeat 1 54 0 806 181 5 0 chr6 71790315 71790758 -110624484 + (CATTC)n Satellite Satellite 1 445 0 1254 67 0 0 chr6 71790780 71790958 -110624284 + (CATTC)n Satellite Satellite 3 180 0 765 158 0 0 chr6 71790974 71791203 -110624039 + (CATTC)n Satellite Satellite 1 229 0 957 183 0 16 chr6 71791223 71791588 -110623654 + (CATTC)n Satellite Satellite 1 360 0 420 219 0 0 chr6 71791618 71791782 -110623460 + (CATTC)n Satellite Satellite 1 164 0 270 153 0 0 chr6 71791795 71791854 -110623388 + (CATTC)n Satellite Satellite 3 61 0 849 167 0 0 chr6 71791873 71792047 -110623195 + (CACTC)n Simple_repeat Simple_repeat 1 174 0 998 165 2 7 chr6 71792073 71793075 -110622167 + (CATTC)n Satellite Satellite 1 996 0 762 162 0 0 chr6 71793095 71793274 -110621968 + (CATTC)n Satellite Satellite 1 179 0 567 197 0 0 chr6 71793301 71793479 -110621763 + (CATTC)n Satellite Satellite 2 179 0 912 169 0 0 chr6 71793491 71793869 -110621373 + (CATTC)n Satellite Satellite 1 378 0 837 184 2 0 chr6 71793890 71794418 -110620824 + (CATTC)n Satellite Satellite 1 529 0 411 201 0 0 chr6 71794460 71794599 -110620643 + (CATTC)n Satellite Satellite 2 140 0 1085 159 3 2 chr6 71794617 71795217 -110620025 + (CATTC)n Satellite Satellite 1 601 0 885 150 0 0 chr6 71795252 71795432 -110619810 + (CATTC)n Satellite Satellite 1 180 0 525 189 0 0 chr6 71795443 71795602 -110619640 + (CATTC)n Satellite Satellite 2 160 0 557 190 6 0 chr6 71795680 71795854 -110619388 + (CATTC)n Satellite Satellite 4 178 0 975 158 0 4 chr6 71795878 71796721 -110618521 + (CATTC)n Satellite Satellite 1 840 0 222 164 0 0 chr6 71796744 71796799 -110618443 + (CATTC)n Satellite Satellite 5 59 0 864 161 0 0 chr6 71796811 71797229 -110618013 + (CATTC)n Satellite Satellite 1 418 0 306 195 0 0 chr6 71797277 71797364 -110617878 + (CATTC)n Satellite Satellite 4 90 0 930 145 0 0 chr6 71797441 71797839 -110617403 + (CATTC)n Satellite Satellite 1 398 0 639 183 0 0 chr6 71797854 71798034 -110617208 + (CATTC)n Satellite Satellite 1 180 0 864 134 0 0 chr6 71798087 71798258 -110616984 + (CATTC)n Satellite Satellite 4 174 0 922 181 3 3 chr6 71798292 71798649 -110616593 + (CATTC)n Satellite Satellite 1 357 0 958 144 3 6 chr6 71798670 71799029 -110616213 + (CATTC)n Satellite Satellite 2 359 0 465 158 0 0 chr6 71799062 71799163 -110616079 + (CATTC)n Satellite Satellite 4 104 0 570 207 0 0 chr6 71799197 71799427 -110615815 + (CATTC)n Satellite Satellite 1 230 0 889 159 3 2 chr6 71799554 71800193 -110615049 + (CATTC)n Satellite Satellite 1 640 0 858 179 0 0 chr6 71800232 71801174 -110614068 + (CATTC)n Satellite Satellite 1 942 0 933 160 0 4 chr6 71801252 71802328 -110612914 + (CATTC)n Satellite Satellite 1 1071 0 747 185 0 0 chr6 71802362 71802740 -110612502 + (CATTC)n Satellite Satellite 1 378 0 1032 153 0 6 chr6 71802754 71803358 -110611884 + (CATTC)n Satellite Satellite 1 600 0 858 171 2 0 chr6 71803374 71803893 -110611349 + (CATTC)n Satellite Satellite 1 520 0 602 177 0 22 chr6 71803914 71804143 -110611099 + (CATTC)n Satellite Satellite 1 223 0 873 170 2 8 chr6 71804200 71805074 -110610168 + (CATTC)n Satellite Satellite 1 869 0 765 186 2 0 chr6 71805088 71805601 -110609641 + (CATTC)n Satellite Satellite 1 514 0 861 167 3 0 chr6 71805636 71805985 -110609257 + (CATTC)n Satellite Satellite 1 350 0 320 217 0 23 chr6 71806027 71806202 -110609040 + (CATTC)n Satellite Satellite 4 174 0 1068 142 2 3 chr6 71806305 71806734 -110608508 + (GAATG)n Satellite Satellite 1 607 0 810 183 0 0 chr6 71806797 71807144 -110608098 + (GAATG)n Satellite Satellite 1 347 0 873 170 2 0 chr6 71807199 71807621 -110607621 + (GAATG)n Satellite Satellite 1 423 0 465 226 0 0 chr6 71807669 71807815 -110607427 + (GAGTG)n Simple_repeat Simple_repeat 4 149 0 1040 153 1 7 chr6 71807793 71808348 -110606894 + (GAATG)n Satellite Satellite 1 733 0 1040 120 0 16 chr6 71808348 71808531 -110606711 + (GAATG)n Satellite Satellite 1 180 0 213 135 27 0 chr6 71808531 71808568 -110606674 + GA-rich Low_complexity Low_complexity 2 39 0 562 179 6 6 chr6 71808791 71808970 -110606272 + (GAATG)n Satellite Satellite 1 179 0 785 197 2 0 chr6 71809006 71809451 -110605791 + (GAATG)n Satellite Satellite 1 446 0 792 173 0 0 chr6 71809484 71809663 -110605579 + (GAATG)n Satellite Satellite 2 180 0 1169 145 4 3 chr6 71809703 71810297 -110604945 + (GAATG)n Satellite Satellite 1 774 0 828 147 0 0 chr6 71810314 71810550 -110604692 + (GAATG)n Satellite Satellite 1 236 0 507 215 0 0 chr6 71810568 71810745 -110604497 + (GAATG)n Satellite Satellite 4 180 0 1002 146 0 0 chr6 71810763 71811396 -110603846 + (GAATG)n Satellite Satellite 1 633 0 29058 74 4 2 chr6 71811496 71815537 -110599705 - L1P LINE L1 -2098 4048 1 1096 161 2 1 chr6 71815538 71818125 -110597117 - ALR/Alpha Satellite centromeric -5 2590 1 1018 174 7 0 chr6 71818229 71824013 -110591229 - ALR/Alpha Satellite centromeric 0 5824 1 1072 165 12 0 chr6 71824026 71826580 -110588662 - ALR/Alpha Satellite centromeric 0 2584 1 1081 166 9 7 chr6 71826681 71829433 -110585809 - ALR/Alpha Satellite centromeric 0 3082 232 751 32 0 0 chr6 71829433 71829526 -110585716 + L1PA2 LINE L1 6062 6154 -1 1081 166 9 7 chr6 71829526 71829759 -110585483 - ALR/Alpha Satellite centromeric -2850 232 1 963 168 2 2 chr6 71829859 71830305 -110584937 - ALR/Alpha Satellite centromeric 0 445 1 * 1124 171 0 0 chr6 71830146 71831142 -110584100 - ALR/Alpha Satellite centromeric 0 995 1 1025 175 6 6 chr6 71831247 71836622 -110578620 - ALR/Alpha Satellite centromeric 0 5372 1 1052 184 0 0 chr6 71836728 71837803 -110577439 - ALR/Alpha Satellite centromeric 0 1075 1 1045 174 8 0 chr6 71837903 71841344 -110573898 - ALR/Alpha Satellite centromeric 0 3468 1 1092 169 3 2 chr6 71841485 71842989 -110572253 - ALR/Alpha Satellite centromeric 0 1505 1 5320 64 3 2 chr6 71842999 71843916 -110571326 + L1PA4 LINE L1 5028 5945 -210 1188 169 5 1 chr6 71844016 71850732 -110564510 - ALR/Alpha Satellite centromeric 0 6743 1 396 0 0 0 chr6 71850780 71850824 -110564418 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 3667 43 0 0 chr6 71850824 71851266 -110563976 - L1PA3 LINE L1 -16 6139 5698 969 184 4 0 chr6 71851372 71851960 -110563282 - ALR/Alpha Satellite centromeric 0 590 1 1221 158 4 2 chr6 71851971 71858341 -110556901 - ALR/Alpha Satellite centromeric 0 6380 1 2660 92 1 6 chr6 71858341 71859490 -110555752 + L1P LINE L1 1 1271 -4875 1164 157 4 1 chr6 71859592 71869211 -110546031 + ALR/Alpha Satellite centromeric 1 9642 -33 1067 168 16 1 chr6 71869315 71871396 -110543846 + ALR/Alpha Satellite centromeric 1 2113 -2 1099 165 4 1 chr6 71871407 71875646 -110539596 + ALR/Alpha Satellite centromeric 1 4251 -66 1131 167 1 1 chr6 71875746 71880440 -110534802 + ALR/Alpha Satellite centromeric 1 4696 -43 888 87 0 0 chr6 71880545 71880672 -110534570 + L1PA4 LINE L1 6026 6152 -3 988 178 1 0 chr6 71880710 71881481 -110533761 - ALR/Alpha Satellite centromeric -11 772 1 865 141 0 27 chr6 71881495 71881680 -110533562 + (GAATG)n Satellite Satellite 1 180 0 966 146 0 0 chr6 71881696 71881867 -110533375 + (GAATG)n Satellite Satellite 4 174 0 399 163 0 0 chr6 71881898 71881978 -110533264 + (GAGTG)n Simple_repeat Simple_repeat 2 81 0 354 208 21 4 chr6 71881978 71882067 -110533175 + AluJ/FRAM SINE Alu 225 279 -23 903 152 0 0 chr6 71882077 71882255 -110532987 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 773 176 6 0 chr6 71882263 71882439 -110532803 + (GAGTG)n Simple_repeat Simple_repeat 3 179 0 183 235 0 0 chr6 71882462 71882513 -110532729 + (CGGAA)n Simple_repeat Simple_repeat 4 54 0 540 205 0 0 chr6 71882517 71882678 -110532564 + (GAGTG)n Simple_repeat Simple_repeat 4 164 0 * 738 189 0 0 chr6 71882646 71882826 -110532416 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 260 184 0 0 chr6 71882830 71882879 -110532363 + (GAGTG)n Simple_repeat Simple_repeat 3 51 0 762 179 0 0 chr6 71882880 71883048 -110532194 + (GAATG)n Satellite Satellite 4 171 0 951 156 0 0 chr6 71883061 71883240 -110532002 + (GAATG)n Satellite Satellite 2 180 0 888 156 0 0 chr6 71883261 71883441 -110531801 + (GAATG)n Satellite Satellite 1 180 0 237 222 0 0 chr6 71883454 71883517 -110531725 + (GAATG)n Satellite Satellite 5 67 0 752 177 6 0 chr6 71883537 71883712 -110531530 + (GAATG)n Satellite Satellite 4 179 0 356 179 0 0 chr6 71883731 71883787 -110531455 + AluJ/FRAM SINE Alu 225 280 -22 780 182 4 0 chr6 71883796 71884036 -110531206 + (GAATG)n Satellite Satellite 1 241 0 693 199 0 0 chr6 71884051 71884222 -110531020 + (GAATG)n Satellite Satellite 4 174 0 228 186 0 0 chr6 71884226 71884285 -110530957 + (GAGTG)n Simple_repeat Simple_repeat 1 59 0 1074 112 0 0 chr6 71884300 71884370 -110530872 + (GAATG)n Satellite Satellite 1 248 0 1074 112 0 0 chr6 71884370 71884548 -110530694 + (GAATG)n Satellite Satellite 3 180 0 1032 133 0 0 chr6 71884615 71884795 -110530447 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 366 150 0 0 chr6 71884840 71884900 -110530342 + (GAATG)n Simple_repeat Simple_repeat 1 60 0 867 160 0 0 chr6 71884902 71885077 -110530165 + (GAGTG)n Simple_repeat Simple_repeat 4 178 0 499 198 8 8 chr6 71885093 71885343 -110529899 + (GAATG)n Satellite Satellite 1 250 0 293 239 7 0 chr6 71885364 71885502 -110529740 + (CGAAT)n Simple_repeat Simple_repeat 2 140 0 912 154 0 0 chr6 71885508 71885683 -110529559 + (GAATG)n Satellite Satellite 1 175 0 897 150 0 0 chr6 71885743 71885923 -110529319 + (GAATG)n Satellite Satellite 1 180 0 615 195 0 0 chr6 71885939 71886260 -110528982 + (GAATG)n Satellite Satellite 1 321 0 933 150 0 0 chr6 71886273 71886453 -110528789 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 768 177 0 0 chr6 71886498 71886673 -110528569 + (GAATG)n Satellite Satellite 5 179 0 186 71 0 0 chr6 71886711 71886739 -110528503 + (GAATG)n Satellite Satellite 4 31 0 1138 170 2 1 chr6 71886843 71893629 -110521613 + ALR/Alpha Satellite centromeric 1 6794 0 996 179 3 9 chr6 71893640 71895045 -110520197 + ALR/Alpha Satellite centromeric 1 1396 -43 1146 163 4 2 chr6 71895149 71906753 -110508489 - ALR/Alpha Satellite centromeric 0 11627 1 1112 168 3 2 chr6 71906861 71910122 -110505120 - ALR/Alpha Satellite centromeric -8 3264 1 2810 80 8 0 chr6 71910137 71910525 -110504717 - L1PA3 LINE L1 0 6155 5765 4923 258 75 47 chr6 71960762 71962514 -110452728 - L1ME1 LINE L1 -7 6159 4458 2109 137 0 0 chr6 71962514 71962820 -110452422 - AluSg SINE Alu -4 306 1 4923 258 75 47 chr6 71962820 71963011 -110452231 - L1ME1 LINE L1 -1708 4458 4274 393 22 0 0 chr6 71963011 71963057 -110452185 + (TG)n Simple_repeat Simple_repeat 2 47 0 4923 258 75 47 chr6 71963057 71964388 -110450854 - L1ME1 LINE L1 -1892 4274 2734 381 286 19 0 chr6 71964417 71964522 -110450720 + MER96 DNA MER1_type? 68 174 -1 1830 195 31 51 chr6 71965520 71965972 -110449270 - L1MA6 LINE L1 0 6300 5858 1222 171 17 4 chr6 71965961 71966201 -110449041 + L1MA6 LINE L1 5642 5884 -416 * 23 33 0 0 chr6 71966206 71966236 -110449006 + AT_rich Low_complexity Low_complexity 1 30 0 300 252 191 0 chr6 71966641 71966772 -110448470 - L1MD3 LINE L1 -11 7984 7829 3305 237 41 26 chr6 71966778 71967203 -110448039 - L1MD2 LINE L1 -226 6133 5716 1256 229 59 28 chr6 71967203 71967557 -110447685 + MLT1A1 LTR MaLR 1 365 0 3305 237 41 26 chr6 71967557 71968162 -110447080 - L1MD2 LINE L1 -643 5716 5081 326 304 46 51 chr6 71968507 71968724 -110446518 - L2 LINE L2 -1 3312 3097 2042 115 7 0 chr6 71968844 71969132 -110446110 + AluSg SINE Alu 1 290 -20 481 316 6 17 chr6 71969196 71969370 -110445872 + L2 LINE L2 3142 3313 0 2105 312 96 92 chr6 71969383 71971497 -110443745 - L2 LINE L2 -342 2972 850 547 237 50 7 chr6 71972784 71972923 -110442319 - MER58B DNA MER1_type -3 338 194 325 306 130 0 chr6 71972954 71973062 -110442180 - MIR SINE MIR -36 226 105 857 57 0 0 chr6 71973556 71973662 -110441580 - L1PA8A LINE L1 -509 5622 5517 3170 79 46 18 chr6 71973662 71974114 -110441128 + L1PA8A LINE L1 5664 6131 0 21 57 0 0 chr6 71974545 71974580 -110440662 + AT_rich Low_complexity Low_complexity 1 35 0 945 204 62 51 chr6 71974818 71975045 -110440197 - MER33 DNA MER1_type -2261 324 91 13357 158 30 8 chr6 71975045 71977411 -110437831 - Tigger1 DNA MER2_type 0 2418 1 945 204 62 51 chr6 71977411 71977515 -110437727 - MER33 DNA MER1_type -2494 91 1 754 293 62 82 chr6 71977758 71978554 -110436688 + L1ME3A LINE L1 5321 6100 -70 544 265 39 44 chr6 71978704 71978885 -110436357 - MER5A DNA MER1_type -9 180 1 1305 197 21 32 chr6 71981255 71981534 -110433708 - AluJo SINE Alu -25 287 12 25 0 0 0 chr6 71981674 71981699 -110433543 + AT_rich Low_complexity Low_complexity 1 25 0 232 298 114 13 chr6 71982482 71982640 -110432602 - L1MD2 LINE L1 -1477 4669 4496 202 351 73 32 chr6 71982783 71983031 -110432211 + L3 LINE CR1 1253 1510 -67 25 75 0 0 chr6 71983226 71983279 -110431963 + AT_rich Low_complexity Low_complexity 1 53 0 283 304 151 27 chr6 71983344 71983643 -110431599 + L1ME LINE L1 5482 5817 -304 332 288 80 18 chr6 71983652 71983815 -110431427 - MIR SINE MIR 0 262 90 2073 100 21 0 chr6 71984167 71984458 -110430784 + AluSp SINE Alu 1 297 -16 606 231 81 0 chr6 71985176 71985336 -110429906 - MIR SINE MIR -24 238 66 3824 196 175 27 chr6 71985359 71986351 -110428891 + L1M1 LINE L1 15 1153 -6412 211 323 72 54 chr6 71986353 71986740 -110428502 + L2 LINE L2 1829 2222 -1092 25 31 0 0 chr6 71986752 71986784 -110428458 + AT_rich Low_complexity Low_complexity 1 32 0 370 244 84 34 chr6 71987520 71987639 -110427603 - L2 LINE L2 -38 3275 3151 21 0 0 0 chr6 71987679 71987700 -110427542 + AT_rich Low_complexity Low_complexity 1 21 0 943 281 183 75 chr6 71987783 71988527 -110426715 - L2 LINE L2 -383 2931 2108 2384 64 3 0 chr6 71989589 71989885 -110425357 - AluY SINE Alu -14 297 1 21 89 0 0 chr6 71990636 71990692 -110424550 + AT_rich Low_complexity Low_complexity 1 56 0 487 161 0 0 chr6 71990829 71990910 -110424332 + L1MD2 LINE L1 6263 6343 -16 1829 177 29 29 chr6 71990943 71991327 -110423915 + MLT1B LTR MaLR 7 390 0 406 319 12 50 chr6 71991393 71991735 -110423507 + L1M4 LINE L1 3839 4167 -1979 324 314 201 31 chr6 71991999 71992353 -110422889 + L1M4 LINE L1 4419 4832 -1314 8665 48 11 3 chr6 71993121 71995012 -110420230 - L1PA5 LINE L1 0 6154 4257 183 263 53 26 chr6 71995223 71995299 -110419943 - L2 LINE L2 -262 3010 2933 22 0 0 0 chr6 71995641 71995663 -110419579 + AT_rich Low_complexity Low_complexity 1 22 0 479 147 25 19 chr6 71996105 71996262 -110418980 + (TA)n Simple_repeat Simple_repeat 2 159 0 21 100 0 0 chr6 71996522 71996592 -110418650 + AT_rich Low_complexity Low_complexity 1 70 0 368 233 42 33 chr6 71996986 71997106 -110418136 - MIR3 SINE MIR -6 202 82 182 148 0 0 chr6 71997210 71997237 -110418005 + L2 LINE L2 3023 3049 -264 21 0 0 0 chr6 71997651 71997672 -110417570 + AT_rich Low_complexity Low_complexity 1 21 0 1984 134 3 10 chr6 71997739 71998046 -110417196 + AluSc SINE Alu 1 305 -4 230 247 47 0 chr6 71998085 71998170 -110417072 - L1MC4 LINE L1 -1340 6702 6614 * 315 257 10 0 chr6 71998169 71998272 -110416970 - L1MCa LINE L1 -1339 6983 1995 267 228 43 43 chr6 71998190 71998282 -110416960 + L1MC4 LINE L1 6614 6705 -1337 * 240 245 21 75 chr6 71998285 71998379 -110416863 + L1MC4 LINE L1 6613 6701 -1341 378 252 52 17 chr6 71998383 71998498 -110416744 + (CATATA)n Simple_repeat Simple_repeat 1 119 0 471 283 0 0 chr6 71998500 71998677 -110416565 + (CATA)n Simple_repeat Simple_repeat 4 180 0 559 244 13 15 chr6 71998682 71999080 -110416162 + (CATATA)n Simple_repeat Simple_repeat 1 397 0 21 71 0 0 chr6 71999239 71999281 -110415961 + AT_rich Low_complexity Low_complexity 1 42 0 180 318 66 93 chr6 71999754 71999905 -110415337 + MIR SINE MIR 8 154 -108 24 77 0 0 chr6 72002045 72002097 -110413145 + AT_rich Low_complexity Low_complexity 1 52 0 249 361 37 42 chr6 72002215 72002406 -110412836 - MIR SINE MIR 0 262 73 414 146 0 0 chr6 72002583 72002665 -110412577 + (TA)n Simple_repeat Simple_repeat 1 82 0 248 262 35 106 chr6 72003052 72003193 -110412049 - L2 LINE L2 -214 3058 2928 26 0 0 0 chr6 72005620 72005646 -110409596 + AT_rich Low_complexity Low_complexity 1 26 0 615 276 89 39 chr6 72005725 72006062 -110409180 - LTR16A LTR ERVL -95 355 2 23 0 0 0 chr6 72007183 72007206 -110408036 + AT_rich Low_complexity Low_complexity 1 23 0 186 238 0 0 chr6 72007343 72007385 -110407857 + MIR SINE MIR 183 224 -38 22 35 0 0 chr6 72007594 72007623 -110407619 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 72008631 72008652 -110406590 + AT_rich Low_complexity Low_complexity 1 21 0 5522 172 33 10 chr6 72008655 72010686 -110404556 - L1MA6 LINE L1 -5 6295 4230 2276 170 101 191 chr6 72010707 72011437 -110403805 + L1 LINE L1 3167 3752 -2394 2131 99 7 3 chr6 72011437 72011729 -110403513 + AluSc SINE Alu 1 293 -16 2276 170 101 191 chr6 72011729 72012175 -110403067 + L1 LINE L1 3752 4237 -1909 382 307 73 58 chr6 72012199 72012404 -110402838 + MLT1I LTR MaLR 1 208 -201 1439 230 3 0 chr6 72012405 72012731 -110402511 - AluJb SINE Alu 0 327 1 22 56 0 0 chr6 72014248 72014284 -110400958 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 72014835 72014856 -110400386 + AT_rich Low_complexity Low_complexity 1 21 0 314 176 0 0 chr6 72014886 72014937 -110400305 + L2 LINE L2 3263 3313 0 180 77 0 0 chr6 72015205 72015231 -110400011 + (TG)n Simple_repeat Simple_repeat 2 27 0 360 0 0 0 chr6 72015235 72015275 -110399967 + (TA)n Simple_repeat Simple_repeat 1 40 0 226 276 11 11 chr6 72015281 72015368 -110399874 - L1MCa LINE L1 -4334 2092 2006 1378 264 53 38 chr6 72016397 72016920 -110398322 + LTR55 LTR ERV 1 531 -17 23 54 0 0 chr6 72016960 72016997 -110398245 + AT_rich Low_complexity Low_complexity 1 37 0 1832 255 28 52 chr6 72017010 72017699 -110397543 + L1ME1 LINE L1 5445 6116 -50 221 134 60 15 chr6 72017779 72017846 -110397396 + (TTATA)n Simple_repeat Simple_repeat 4 73 0 703 274 54 80 chr6 72018237 72018828 -110396414 + L2 LINE L2 2596 3306 -7 996 54 78 0 chr6 72019054 72019183 -110396059 - MER85 DNA T2_type 0 139 1 23 78 0 0 chr6 72019196 72019247 -110395995 + AT_rich Low_complexity Low_complexity 1 51 0 1168 213 28 72 chr6 72020450 72020741 -110394501 + AluJb SINE Alu 3 280 -32 254 50 25 0 chr6 72020741 72020781 -110394461 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 24 0 0 0 chr6 72020899 72020923 -110394319 + AT_rich Low_complexity Low_complexity 1 24 0 1174 215 40 22 chr6 72020960 72021234 -110394008 + AluJb SINE Alu 1 279 -33 306 0 0 0 chr6 72021234 72021268 -110393974 + (CAAT)n Simple_repeat Simple_repeat 3 36 0 1303 229 23 54 chr6 72021885 72022273 -110392969 - LTR55 LTR ERV -6 542 167 529 113 0 0 chr6 72022274 72022354 -110392888 - MADE1 DNA Mariner 0 80 1 * 927 163 18 0 chr6 72022354 72022518 -110392724 - LTR55 LTR ERV -381 167 1 349 325 125 10 chr6 72022608 72022771 -110392471 + L1M4 LINE L1 4258 4401 -1745 279 93 0 0 chr6 72022771 72022814 -110392428 + (CA)n Simple_repeat Simple_repeat 2 44 0 349 325 125 10 chr6 72022814 72022945 -110392297 + L1M4 LINE L1 4401 4586 -1560 24 0 0 0 chr6 72022948 72022972 -110392270 + AT_rich Low_complexity Low_complexity 1 24 0 276 102 0 0 chr6 72023747 72023796 -110391446 + (TTAG)n Simple_repeat Simple_repeat 2 50 0 628 199 80 11 chr6 72024301 72024477 -110390765 - MER53 DNA DNA 0 189 2 268 344 8 16 chr6 72025551 72025676 -110389566 + MIR SINE MIR 139 262 0 24 32 0 0 chr6 72025676 72025707 -110389535 + AT_rich Low_complexity Low_complexity 1 31 0 1908 121 0 0 chr6 72026161 72026433 -110388809 + AluSg SINE Alu 39 310 0 1011 203 18 31 chr6 72026460 72026682 -110388560 + AluJo SINE Alu 84 302 -10 22 0 0 0 chr6 72028122 72028144 -110387098 + AT_rich Low_complexity Low_complexity 1 22 0 607 323 190 7 chr6 72029667 72030073 -110385169 + MLT1G1 LTR MaLR 109 588 -7 26 30 0 0 chr6 72030664 72030697 -110384545 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 72030766 72030795 -110384447 + AT_rich Low_complexity Low_complexity 1 29 0 257 125 31 0 chr6 72031002 72031066 -110384176 + (CAGA)n Simple_repeat Simple_repeat 3 68 0 25 0 0 0 chr6 72031326 72031351 -110383891 + AT_rich Low_complexity Low_complexity 1 25 0 2287 93 0 0 chr6 72031850 72032141 -110383101 - AluSc SINE Alu -18 291 1 191 295 49 0 chr6 72033729 72033790 -110381452 - MIR SINE MIR -48 214 151 240 240 8 80 chr6 72034210 72034335 -110380907 + L1M4 LINE L1 1118 1233 -5151 247 227 91 53 chr6 72034375 72034507 -110380735 + L1M4 LINE L1 1263 1399 -4983 1426 264 54 37 chr6 72034560 72035141 -110380101 + L1M4 LINE L1 4832 5402 -980 2048 103 0 38 chr6 72035141 72035433 -110379809 + AluSc SINE Alu 2 282 -27 198 0 0 0 chr6 72035440 72035462 -110379780 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1426 264 54 37 chr6 72035462 72035570 -110379672 + L1M4 LINE L1 5407 5541 -841 3677 156 9 3 chr6 72035881 72036523 -110378719 + L1MA5 LINE L1 5650 6295 -5 2265 67 0 67 chr6 72036804 72037134 -110378108 - AluY SINE Alu -1 310 3 26 50 0 0 chr6 72038392 72038432 -110376810 + AT_rich Low_complexity Low_complexity 1 40 0 2201 121 48 25 chr6 72038958 72039313 -110375929 - THE1B LTR MaLR 0 364 2 1050 233 23 0 chr6 72040078 72040297 -110374945 + MER58A DNA MER1_type 1 224 0 1683 177 10 0 chr6 72040789 72041083 -110374159 + AluSx SINE Alu 1 297 -15 845 245 94 6 chr6 72041796 72042135 -110373107 - MER114 LTR ERV -104 544 176 11426 77 2 0 chr6 72042137 72043689 -110371553 - L1PA7 LINE L1 -1689 4457 2903 6542 109 6 5 chr6 72043689 72045393 -110369849 + L1PA7 LINE L1 4437 6141 -13 29 28 0 0 chr6 72046219 72046255 -110368987 + AT_rich Low_complexity Low_complexity 1 36 0 333 0 0 0 chr6 72046537 72046574 -110368668 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr6 72046868 72046900 -110368342 + AT_rich Low_complexity Low_complexity 1 32 0 1884 184 34 31 chr6 72046989 72047376 -110367866 + MLT1B LTR MaLR 3 390 0 579 137 24 8 chr6 72047561 72047685 -110367557 + GA-rich Low_complexity Low_complexity 3 128 0 1981 96 15 0 chr6 72048177 72048471 -110366771 - AluSx SINE Alu 0 308 11 32 0 0 0 chr6 72049500 72049532 -110365710 + AT_rich Low_complexity Low_complexity 1 32 0 2303 68 0 13 chr6 72049532 72049839 -110365403 - AluY SINE Alu 0 311 9 27 0 0 0 chr6 72049893 72049920 -110365322 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr6 72051306 72051327 -110363915 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 72051506 72051544 -110363698 + AT_rich Low_complexity Low_complexity 1 38 0 181 366 32 21 chr6 72051976 72052069 -110363173 - MIR SINE MIR -164 98 5 180 0 0 0 chr6 72052934 72052954 -110362288 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 877 188 51 30 chr6 72052954 72053151 -110362091 - MER6B DNA MER2_type -8 202 2 261 279 93 36 chr6 72055108 72055248 -110359994 - MIR SINE MIR 0 262 115 394 275 110 0 chr6 72055296 72055405 -110359837 - MIR SINE MIR -128 134 14 24 53 0 0 chr6 72056679 72056717 -110358525 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr6 72057202 72057232 -110358010 + AT_rich Low_complexity Low_complexity 1 30 0 319 71 0 0 chr6 72057444 72057486 -110357756 - L1MC/D LINE L1 -594 6157 6116 501 129 8 144 chr6 72057499 72057631 -110357611 + L1MC/D LINE L1 5589 5702 -631 1837 214 63 76 chr6 72057668 72058271 -110356971 - L1MC3 LINE L1 -22 7763 7169 * 7474 251 68 22 chr6 72058266 72061553 -110353689 - L1MC/D LINE L1 -743 5821 2606 3211 230 72 41 chr6 72061593 72061735 -110353507 - L1MCb LINE L1 -4096 2468 2332 1476 199 40 10 chr6 72061735 72062036 -110353206 - AluJo SINE Alu 0 312 3 3211 230 72 41 chr6 72062036 72062880 -110352362 - L1MCb LINE L1 -4232 2332 1515 180 0 0 0 chr6 72062880 72062900 -110352342 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3211 230 72 41 chr6 72062900 72063659 -110351583 - L1MCb LINE L1 -5049 1515 575 2202 88 37 3 chr6 72063659 72063955 -110351287 + AluY SINE Alu 2 307 -4 3211 230 72 41 chr6 72063955 72064281 -110350961 - L1MCb LINE L1 -5989 575 260 867 243 69 9 chr6 72064569 72064996 -110350246 - L1M1 LINE L1 -619 5547 5126 828 283 79 62 chr6 72065016 72065287 -110349955 - HAL1 LINE L1 -538 1969 1704 3475 12 15 0 chr6 72065287 72065697 -110349545 - L1PA3 LINE L1 0 6155 5740 828 283 79 62 chr6 72065697 72066022 -110349220 - HAL1 LINE L1 -803 1704 1363 234 0 0 0 chr6 72066608 72066634 -110348608 + (TG)n Simple_repeat Simple_repeat 1 26 0 191 36 36 0 chr6 72066634 72066662 -110348580 + (GA)n Simple_repeat Simple_repeat 2 30 0 267 333 23 82 chr6 72066840 72066940 -110348302 - MIR SINE MIR -68 194 107 1733 153 0 94 chr6 72066940 72067279 -110347963 + AluSx SINE Alu 4 310 -2 267 333 23 82 chr6 72067279 72067349 -110347893 - MIR SINE MIR -155 107 34 2347 73 10 13 chr6 72067477 72067780 -110347462 + AluY SINE Alu 1 302 -9 21633 35 0 0 chr6 72067815 72071218 -110344024 + L1PA3 LINE L1 2747 6152 -3 227 192 19 19 chr6 72071327 72071379 -110343863 + GA-rich Low_complexity Low_complexity 3 54 0 207 293 110 0 chr6 72071386 72071468 -110343774 + MIR SINE MIR 165 255 -7 204 179 0 0 chr6 72071435 72071474 -110343768 + L2 LINE L2 3227 3265 -7 * 325 286 68 23 chr6 72071872 72072005 -110343237 - MIR SINE MIR -14 248 110 21 0 0 0 chr6 72072540 72072561 -110342681 + AT_rich Low_complexity Low_complexity 1 21 0 638 283 52 24 chr6 72073275 72073487 -110341755 - MIR SINE MIR -38 224 7 281 207 0 35 chr6 72073862 72073920 -110341322 + L2 LINE L2 3190 3245 -68 2204 80 117 0 chr6 72073936 72074260 -110340982 - THE1B LTR MaLR 0 364 3 784 261 112 20 chr6 72074340 72074549 -110340693 + LTR37A LTR ERV1 46 234 -192 201 39 0 0 chr6 72074549 72074575 -110340667 + (TG)n Simple_repeat Simple_repeat 1 26 0 784 261 112 20 chr6 72074575 72074714 -110340528 + LTR37A LTR ERV1 234 426 0 21 104 0 0 chr6 72074754 72074831 -110340411 + AT_rich Low_complexity Low_complexity 1 77 0 207 0 0 0 chr6 72074953 72074976 -110340266 + (TA)n Simple_repeat Simple_repeat 2 24 0 1413 142 0 35 chr6 72074976 72075202 -110340040 - AluJb SINE Alu -6 306 89 319 171 12 12 chr6 72075874 72075956 -110339286 + (TA)n Simple_repeat Simple_repeat 2 83 0 408 314 93 34 chr6 72076512 72076748 -110338494 + MIR SINE MIR 13 262 0 226 400 0 11 chr6 72077077 72077167 -110338075 + L2 LINE L2 3210 3298 -15 634 195 0 16 chr6 72077591 72077714 -110337528 + FLAM_C SINE Alu 7 127 -16 372 243 63 0 chr6 72078442 72078553 -110336689 + L1MA8 LINE L1 6171 6288 -3 1522 181 11 0 chr6 72078590 72078940 -110336302 + L1MA9 LINE L1 5789 6277 -35 23 68 0 0 chr6 72078940 72078984 -110336258 + AT_rich Low_complexity Low_complexity 1 44 0 5724 183 42 49 chr6 72079095 72079146 -110336096 - ERVL LTR ERVL -644 5120 5070 2154 110 0 3 chr6 72079146 72079438 -110335804 - AluSx SINE Alu -21 291 1 5724 183 42 49 chr6 72079438 72080322 -110334920 - ERVL LTR ERVL -694 5070 4192 704 49 10 20 chr6 72080322 72080424 -110334818 - L1PA8 LINE L1 0 6172 6072 5724 183 42 49 chr6 72080424 72080718 -110334524 - ERVL LTR ERVL -1572 4192 3898 385 356 22 18 chr6 72080935 72081160 -110334082 + ERVL LTR ERVL 2581 2806 -2958 933 224 109 46 chr6 72081205 72081571 -110333671 - MSTC LTR MaLR 0 428 1 2235 68 0 4 chr6 72081802 72082083 -110333159 + AluY SINE Alu 13 292 -19 338 341 49 29 chr6 72082523 72082728 -110332514 + ERVL LTR ERVL 3608 3816 -1948 536 354 85 17 chr6 72082778 72083239 -110332003 + ERVL LTR ERVL 4067 4558 -1096 1014 208 96 30 chr6 72083670 72084002 -110331240 + MSTD LTR MaLR 1 396 0 1660 189 31 31 chr6 72084904 72085264 -110329978 + MLT1A1 LTR MaLR 4 363 -2 259 306 14 0 chr6 72085504 72085576 -110329666 + L1MC/D LINE L1 5552 5624 -2184 707 244 81 14 chr6 72085584 72085793 -110329449 + MER58A DNA MER1_type 2 224 0 185 268 0 0 chr6 72085948 72085989 -110329253 + MIR SINE MIR 86 126 -136 327 95 0 0 chr6 72088126 72088168 -110327074 + L1P2 LINE L1 5525 5566 -588 35 78 0 0 chr6 72088257 72088334 -110326908 + AT_rich Low_complexity Low_complexity 1 77 0 3041 75 0 2 chr6 72088419 72088831 -110326411 + L1P LINE L1 3309 3719 -2427 1434 229 43 0 chr6 72088832 72089133 -110326109 + MLT1A1 LTR MaLR 52 365 0 2830 210 28 11 chr6 72089133 72089705 -110325537 + MER89-int LTR ERV1 6220 6801 0 1898 179 50 4 chr6 72089708 72090144 -110325098 + MER89 LTR ERV1 4 559 0 1825 209 40 86 chr6 72090271 72090514 -110324728 - MLT2B1 LTR ERVL 0 520 267 2702 99 0 3 chr6 72090514 72090879 -110324363 + THE1B LTR MaLR 1 364 0 1825 209 40 86 chr6 72090879 72091180 -110324062 - MLT2B1 LTR ERVL -253 267 1 620 349 34 32 chr6 72091382 72091818 -110323424 - L2 LINE L2 -1048 2266 1830 549 250 5 46 chr6 72092039 72092235 -110323007 + L1M4 LINE L1 4504 4691 -1455 2433 84 0 0 chr6 72092290 72092622 -110322620 + L1PA7 LINE L1 5819 6150 -4 614 265 88 25 chr6 72093179 72093417 -110321825 + MIR SINE MIR 3 255 -7 274 260 0 14 chr6 72093694 72093767 -110321475 - MIR SINE MIR -16 246 175 420 336 118 9 chr6 72093959 72094188 -110321054 + L2 LINE L2 2684 2937 -377 189 299 30 15 chr6 72095407 72095474 -110319768 - MIR3 SINE MIR -139 69 2 2165 92 0 20 chr6 72095903 72096198 -110319044 + AluSx SINE Alu 1 289 -23 333 0 0 0 chr6 72097740 72097777 -110317465 + (TG)n Simple_repeat Simple_repeat 2 38 0 1755 153 45 0 chr6 72098276 72098564 -110316678 - AluSg SINE Alu -3 307 7 380 144 45 8 chr6 72098632 72098764 -110316478 + (TA)n Simple_repeat Simple_repeat 2 138 0 276 148 0 0 chr6 72099256 72099268 -110315974 + (GA)n Simple_repeat Simple_repeat 1 12 -42 261 0 0 0 chr6 72099268 72099297 -110315945 + (TG)n Simple_repeat Simple_repeat 1 29 0 276 148 0 0 chr6 72099297 72099338 -110315904 + (GA)n Simple_repeat Simple_repeat 11 54 0 189 0 0 0 chr6 72099366 72099387 -110315855 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1741 127 46 11 chr6 72099654 72099967 -110315275 + THE1C LTR MaLR 1 373 -2 315 216 0 7 chr6 72100435 72100506 -110314736 - AluJ/monomer SINE Alu -247 53 1 28 0 0 0 chr6 72101253 72101281 -110313961 + AT_rich Low_complexity Low_complexity 1 28 0 1301 207 11 35 chr6 72101282 72101567 -110313675 - AluJb SINE Alu -8 304 27 22 0 0 0 chr6 72101583 72101605 -110313637 + AT_rich Low_complexity Low_complexity 1 22 0 354 256 66 0 chr6 72101644 72101765 -110313477 - LTR37A LTR ERV1 -9 417 289 21 0 0 0 chr6 72101809 72101830 -110313412 + AT_rich Low_complexity Low_complexity 1 21 0 1808 155 37 0 chr6 72101840 72102137 -110313105 - AluSx SINE Alu -4 308 1 249 262 135 8 chr6 72102512 72102638 -110312604 - L1ME LINE L1 -268 5853 5712 22 0 0 0 chr6 72102677 72102699 -110312543 + AT_rich Low_complexity Low_complexity 1 22 0 1387 189 99 3 chr6 72103048 72103350 -110311892 + MER92B LTR ERV1 1 331 -305 1609 162 91 0 chr6 72104148 72104457 -110310785 - MER1B DNA MER1_type 0 337 1 343 297 101 7 chr6 72104657 72104805 -110310437 + MER58A DNA MER1_type 1 162 0 634 340 62 4 chr6 72104818 72105062 -110310180 + MER45C DNA AcHobo 2 259 -694 369 0 0 0 chr6 72105411 72105452 -110309790 + (T)n Simple_repeat Simple_repeat 1 41 0 6415 7 0 0 chr6 72105606 72106325 -110308917 - L1HS LINE L1 -2 6153 5435 * 8748 22 0 1 chr6 72106308 72107404 -110307838 + L1P1 LINE L1 4357 5451 -704 21 0 0 0 chr6 72107730 72107751 -110307491 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 72109131 72109158 -110306084 + AT_rich Low_complexity Low_complexity 1 27 0 960 251 118 12 chr6 72109179 72109502 -110305740 + MLT1A1 LTR MaLR 1 357 -8 21 82 0 0 chr6 72110739 72110788 -110304454 + AT_rich Low_complexity Low_complexity 1 49 0 780 197 133 57 chr6 72111008 72111308 -110303934 + MER33 DNA MER1_type 2 324 0 691 193 0 0 chr6 72111456 72111570 -110303672 + FLAM_A SINE Alu 1 114 -19 249 33 0 0 chr6 72111654 72111684 -110303558 + (TG)n Simple_repeat Simple_repeat 1 30 0 272 317 99 21 chr6 72111698 72111840 -110303402 - MIR SINE MIR -18 244 92 5371 192 126 53 chr6 72112382 72113822 -110301420 - MER52A LTR ERV1 0 1755 211 384 282 10 10 chr6 72113805 72113908 -110301334 - MER52A LTR ERV1 -1652 103 1 * 217 376 54 0 chr6 72114101 72114194 -110301048 + MIR3 SINE MIR 64 161 -47 1596 176 12 50 chr6 72114352 72114675 -110300567 + AluSx SINE Alu 1 311 -1 28 29 0 0 chr6 72115450 72115485 -110299757 + AT_rich Low_complexity Low_complexity 1 35 0 389 111 33 56 chr6 72115485 72115665 -110299577 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 193 308 87 10 chr6 72116074 72116178 -110299064 - MER5B DNA MER1_type -66 112 1 749 224 97 0 chr6 72116812 72117040 -110298202 + Charlie2 DNA MER1_type 2612 2861 -1 22 88 0 0 chr6 72117110 72117167 -110298075 + AT_rich Low_complexity Low_complexity 1 57 0 25 90 0 0 chr6 72117263 72117330 -110297912 + AT_rich Low_complexity Low_complexity 1 67 0 374 341 28 40 chr6 72118289 72118465 -110296777 - MIR3 SINE MIR -3 205 32 30 59 0 0 chr6 72118651 72118702 -110296540 + AT_rich Low_complexity Low_complexity 1 51 0 693 286 150 74 chr6 72118973 72119116 -110296126 + MER50 LTR ERV1 2 133 -601 8037 89 10 17 chr6 72119116 72120231 -110295011 + L1PA7 LINE L1 4210 5318 -836 2820 10 0 0 chr6 72120231 72120542 -110294700 + AluYa5 SINE Alu 1 311 0 8037 89 10 17 chr6 72120542 72121374 -110293868 + L1PA7 LINE L1 5318 6154 0 693 286 150 74 chr6 72121374 72121890 -110293352 + MER50 LTR ERV1 133 711 -23 241 286 12 14 chr6 72121942 72122026 -110293216 + MIR SINE MIR 69 151 -57 313 209 0 12 chr6 72122128 72122208 -110293034 + MSTC LTR MaLR 244 356 -72 227 122 20 0 chr6 72122205 72122254 -110292988 - LTR66 LTR ERVL -167 443 394 * 25 31 0 0 chr6 72122254 72122286 -110292956 + AT_rich Low_complexity Low_complexity 1 32 0 33 43 0 0 chr6 72122374 72122421 -110292821 + AT_rich Low_complexity Low_complexity 1 47 0 456 223 46 113 chr6 72122485 72122768 -110292474 + LTR37B LTR ERV1 29 292 -176 2758 152 58 61 chr6 72122852 72123476 -110291766 + LTR29 LTR ERV1 1 622 0 866 142 25 98 chr6 72123814 72123990 -110291252 + LTR8A LTR ERV1 1 161 -530 1900 113 10 8 chr6 72123990 72124381 -110290861 + LTR7 LTR ERV1 1 442 -8 2580 171 14 68 chr6 72124390 72124947 -110290295 + LTR8 LTR ERV1 165 691 0 26 30 0 0 chr6 72125089 72125122 -110290120 + AT_rich Low_complexity Low_complexity 1 33 0 263 271 0 0 chr6 72125945 72126004 -110289238 + MER82 DNA MER2_type 1 59 -594 2382 202 58 31 chr6 72126052 72126607 -110288635 - MER34C LTR ERV1 -8 577 8 366 301 51 0 chr6 72126752 72126948 -110288294 + L1M4 LINE L1 4462 4667 -1479 468 335 131 3 chr6 72127106 72127458 -110287784 + L1M4 LINE L1 4842 5238 -908 336 250 0 0 chr6 72127539 72127599 -110287643 + Tigger3(Golem) DNA MER2_type 1 60 -2969 734 221 0 20 chr6 72127600 72127749 -110287493 + Tigger3(Golem) DNA MER2_type 2879 3024 -5 467 280 0 0 chr6 72129223 72129355 -110285887 + L1MA8 LINE L1 2222 2353 -4496 12933 191 26 27 chr6 72129363 72130013 -110285229 + L1MA8 LINE L1 2950 3599 -3394 1623 167 14 31 chr6 72130013 72130330 -110284912 + AluSx SINE Alu 1 312 0 12933 191 26 27 chr6 72130330 72133709 -110281533 + L1MA8 LINE L1 3599 6988 -5 1392 219 38 51 chr6 72134407 72134799 -110280443 - MLT1B LTR MaLR 0 390 4 1928 125 0 28 chr6 72136880 72137206 -110278036 + AluSg SINE Alu 1 318 0 25 31 0 0 chr6 72138017 72138049 -110277193 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 72138933 72138955 -110276287 + AT_rich Low_complexity Low_complexity 1 22 0 480 204 177 66 chr6 72139201 72139382 -110275860 + MER20 DNA MER1_type 18 218 -1 29 0 0 0 chr6 72139856 72139885 -110275357 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr6 72140420 72140475 -110274767 + AT_rich Low_complexity Low_complexity 1 55 0 485 127 0 0 chr6 72140881 72140960 -110274282 + MADE1 DNA Mariner 1 79 -1 2260 143 11 3 chr6 72142259 72142630 -110272612 + THE1C LTR MaLR 1 374 -1 252 263 119 38 chr6 72142918 72143078 -110272164 + L3b LINE CR1 1240 1412 -171 24 77 0 0 chr6 72144658 72144710 -110270532 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr6 72144918 72144946 -110270296 + AT_rich Low_complexity Low_complexity 1 28 0 263 309 8 65 chr6 72145131 72145254 -110269988 + MLT1I LTR MaLR 141 256 -153 706 150 23 23 chr6 72145305 72145318 -110269924 - FRAM SINE Alu -148 164 152 4619 151 24 14 chr6 72145318 72146185 -110269057 - L1MA6 LINE L1 -4 6296 5421 706 150 23 23 chr6 72146185 72146304 -110268938 - FRAM SINE Alu -159 153 32 264 149 0 0 chr6 72146323 72146370 -110268872 + (TG)n Simple_repeat Simple_repeat 2 48 0 245 360 103 37 chr6 72146631 72146981 -110268261 + L2 LINE L2 2938 3310 -3 315 315 46 8 chr6 72147485 72147615 -110267627 - MIR SINE MIR -21 241 107 331 327 73 20 chr6 72148429 72148579 -110266663 - MER5B DNA MER1_type -19 159 2 428 277 0 39 chr6 72148884 72149014 -110266228 - MIR SINE MIR -104 158 34 219 114 0 0 chr6 72149092 72149127 -110266115 + (TTA)n Simple_repeat Simple_repeat 2 36 0 259 222 0 154 chr6 72149127 72149244 -110265998 - MIR SINE MIR -16 246 148 4167 46 6 0 chr6 72149532 72150057 -110265185 - L1P LINE L1 -886 5260 4733 3175 50 0 2 chr6 72150057 72150454 -110264788 + L1PA5 LINE L1 5756 6154 0 401 287 90 0 chr6 72150469 72150591 -110264651 + MIR SINE MIR 86 218 -44 798 251 82 139 chr6 72150788 72151314 -110263928 + MLT1F1 LTR MaLR 70 565 -2 325 235 121 40 chr6 72152112 72152261 -110262981 + MER103 DNA DNA 3 163 -3 254 316 43 26 chr6 72152358 72152475 -110262767 + L2 LINE L2 3154 3272 0 1638 191 4 0 chr6 72152791 72153069 -110262173 + AluJb SINE Alu 1 279 -33 221 0 0 33 chr6 72153069 72153099 -110262143 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 685 292 42 14 chr6 72153722 72153938 -110261304 + MIR SINE MIR 11 232 -30 904 224 6 6 chr6 72153972 72154146 -110261096 + MER8 DNA MER2_type 1 174 -65 424 156 13 13 chr6 72154184 72154261 -110260981 - Tigger2 DNA MER2_type -2641 77 1 359 316 9 9 chr6 72157478 72157592 -110257650 - L2 LINE L2 0 3313 3200 200 349 35 12 chr6 72158130 72158216 -110257026 - L2 LINE L2 -83 3189 3102 381 189 33 0 chr6 72159490 72159580 -110255662 + L1ME2 LINE L1 6062 6154 -10 1761 164 3 7 chr6 72159815 72160107 -110255135 - AluJo SINE Alu -11 301 11 25 31 0 0 chr6 72160305 72160337 -110254905 + AT_rich Low_complexity Low_complexity 1 32 0 271 317 77 22 chr6 72160389 72160572 -110254670 + L1ME LINE L1 5499 5691 -430 22 35 0 0 chr6 72160645 72160674 -110254568 + AT_rich Low_complexity Low_complexity 1 29 0 242 224 17 0 chr6 72160762 72160820 -110254422 + (TATG)n Simple_repeat Simple_repeat 2 60 0 6456 138 34 55 chr6 72163041 72164291 -110250951 - Tigger3b DNA MER2_type -7 1224 1 23 0 0 0 chr6 72164348 72164371 -110250871 + AT_rich Low_complexity Low_complexity 1 23 0 1196 220 8 34 chr6 72164911 72165179 -110250063 - AluJo SINE Alu -51 261 1 25 31 0 0 chr6 72166521 72166553 -110248689 + AT_rich Low_complexity Low_complexity 1 32 0 631 287 0 17 chr6 72166676 72166857 -110248385 - MER5B DNA MER1_type 0 178 1 24 0 0 0 chr6 72167053 72167077 -110248165 + AT_rich Low_complexity Low_complexity 1 24 0 302 97 14 42 chr6 72167169 72167241 -110248001 + (TA)n Simple_repeat Simple_repeat 1 70 0 23 0 0 0 chr6 72168248 72168271 -110246971 + AT_rich Low_complexity Low_complexity 1 23 0 304 143 0 26 chr6 72170351 72170428 -110244814 + (TA)n Simple_repeat Simple_repeat 2 76 0 24 32 0 0 chr6 72170488 72170519 -110244723 + AT_rich Low_complexity Low_complexity 1 31 0 2372 87 0 0 chr6 72170625 72170936 -110244306 + AluY SINE Alu 1 311 0 26 0 0 0 chr6 72171066 72171092 -110244150 + AT_rich Low_complexity Low_complexity 1 26 0 2245 98 0 0 chr6 72171478 72171775 -110243467 + AluSc SINE Alu 1 297 -12 25 0 8 0 chr6 72172463 72172528 -110242714 + AT_rich Low_complexity Low_complexity 1 25 0 28389 34 1 1 chr6 72172528 72176774 -110238468 - L1PA3 LINE L1 -4 6151 1905 21 57 0 0 chr6 72177409 72177444 -110237798 + AT_rich Low_complexity Low_complexity 1 35 0 1310 240 10 3 chr6 72177725 72178029 -110237213 - AluJb SINE Alu -4 308 3 22 0 0 0 chr6 72178289 72178311 -110236931 + AT_rich Low_complexity Low_complexity 1 22 0 181 359 0 0 chr6 72178527 72178580 -110236662 + L2 LINE L2 3252 3304 -9 197 383 49 0 chr6 72178677 72178758 -110236484 + MIR SINE MIR 165 249 -13 213 175 0 0 chr6 72178972 72179012 -110236230 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 549 286 80 5 chr6 72179245 72179444 -110235798 + MLT1E2 LTR MaLR 1 214 -412 1907 170 43 38 chr6 72179445 72179993 -110235249 + MLT2A2 LTR ERVL 1 554 0 1148 283 32 12 chr6 72180050 72180389 -110234853 + MLT1E2 LTR MaLR 281 626 0 192 77 0 0 chr6 72181744 72181770 -110233472 + (TAA)n Simple_repeat Simple_repeat 1 26 0 405 113 21 41 chr6 72181937 72182034 -110233208 + CT-rich Low_complexity Low_complexity 2 96 0 3814 143 23 92 chr6 72182313 72183840 -110231402 + pTR5 LTR ERV1 738 2606 0 1008 121 24 12 chr6 72184280 72184445 -110230797 + LTR26B LTR ERV1 1 167 -364 6626 83 3 16 chr6 72184545 72184643 -110230599 - L1PA7 LINE L1 -21 6133 6035 7113 43 29 1 chr6 72184643 72185516 -110229726 - MER11D LTR ERVK 0 897 1 6626 83 3 16 chr6 72185516 72186795 -110228447 - L1PA7 LINE L1 -119 6035 4773 1569 167 82 15 chr6 72186795 72187137 -110228105 + L1PB4 LINE L1 5678 6042 -114 767 213 0 10 chr6 72187243 72187445 -110227797 - L1 LINE L1 -1592 4554 4355 1107 212 8 12 chr6 72187449 72187708 -110227534 - L1 LINE L1 -2161 3985 3728 * 2651 187 38 83 chr6 72187707 72188949 -110226293 + L1PB4 LINE L1 4920 6154 -2 776 352 154 15 chr6 72189291 72189973 -110225269 + L2 LINE L2 917 1693 -1621 198 118 0 0 chr6 72189984 72190018 -110225224 + (TA)n Simple_repeat Simple_repeat 1 34 0 310 160 53 96 chr6 72190028 72190122 -110225120 - L1MC4 LINE L1 -1339 6703 6614 200 152 43 0 chr6 72190876 72190922 -110224320 + CT-rich Low_complexity Low_complexity 2 49 0 231 114 0 0 chr6 72191124 72191159 -110224083 + (T)n Simple_repeat Simple_repeat 1 35 0 1226 102 0 48 chr6 72191830 72192016 -110223226 + AluSp SINE Alu 130 306 -7 275 345 0 0 chr6 72192327 72192414 -110222828 + MIR SINE MIR 15 101 -161 28 29 0 0 chr6 72192628 72192663 -110222579 + AT_rich Low_complexity Low_complexity 1 35 0 382 105 0 26 chr6 72193095 72193171 -110222071 + (TA)n Simple_repeat Simple_repeat 1 74 0 588 263 125 60 chr6 72193182 72193361 -110221881 + L2 LINE L2 1721 1887 -1427 1831 127 0 80 chr6 72193361 72193675 -110221567 + AluSx SINE Alu 5 293 -19 588 263 125 60 chr6 72193675 72193814 -110221428 + L2 LINE L2 1887 2060 -1254 204 355 0 0 chr6 72193947 72194023 -110221219 - MIR SINE MIR -74 188 113 275 357 10 0 chr6 72194060 72194158 -110221084 + L2 LINE L2 2238 2336 -978 1734 245 95 19 chr6 72194173 72194246 -110220996 + MLT1D LTR MaLR 1 67 -438 2033 145 103 5 chr6 72194246 72194633 -110220609 + MSTA LTR MaLR 2 426 -2 1734 245 95 19 chr6 72194633 72195021 -110220221 + MLT1D LTR MaLR 67 497 -8 342 0 0 0 chr6 72195782 72195820 -110219422 + (T)n Simple_repeat Simple_repeat 1 38 0 5691 180 7 24 chr6 72195925 72197067 -110218175 + L1P LINE L1 3291 4413 -1733 5247 108 0 0 chr6 72197060 72197848 -110217394 + L1P LINE L1 2762 3549 -2597 * 21 0 0 0 chr6 72199307 72199328 -110215914 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 72201275 72201296 -110213946 + AT_rich Low_complexity Low_complexity 1 21 0 180 403 13 34 chr6 72201504 72201653 -110213589 - L2 LINE L2 -1 3312 3167 2098 32 0 4 chr6 72201979 72202227 -110213015 + AluY SINE Alu 1 247 -64 2424 65 0 3 chr6 72202469 72202776 -110212466 + AluY SINE Alu 1 306 -5 368 337 12 25 chr6 72202856 72203019 -110212223 - L2 LINE L2 -659 2655 2495 296 294 69 0 chr6 72203531 72203686 -110211556 - L1ME LINE L1 -272 5892 5727 24 0 0 0 chr6 72203824 72203848 -110211394 + AT_rich Low_complexity Low_complexity 1 24 0 265 299 19 39 chr6 72203849 72204003 -110211239 + L1P LINE L1 4897 5047 -1099 207 233 33 67 chr6 72204041 72204131 -110211111 + L2 LINE L2 2621 2707 -607 355 355 97 11 chr6 72204162 72204441 -110210801 + L2 LINE L2 3011 3313 0 1679 178 0 3 chr6 72205045 72205369 -110209873 + AluSx SINE Alu 1 323 0 255 114 0 0 chr6 72205404 72205448 -110209794 + (TG)n Simple_repeat Simple_repeat 1 44 0 1955 183 16 22 chr6 72205453 72205819 -110209423 + MLT2D LTR ERVL 3 366 -48 245 163 143 0 chr6 72205861 72205910 -110209332 + MLT2D LTR ERVL 409 464 0 197 183 17 0 chr6 72205925 72205985 -110209257 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 41 48 0 0 chr6 72206217 72206279 -110208963 + AT_rich Low_complexity Low_complexity 1 62 0 337 394 62 4 chr6 72206714 72206955 -110208287 - MIR SINE MIR -1 261 7 218 250 0 28 chr6 72208685 72208757 -110206485 + (TA)n Simple_repeat Simple_repeat 2 71 0 22 0 0 0 chr6 72210841 72210863 -110204379 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 72210929 72210961 -110204281 + AT_rich Low_complexity Low_complexity 1 32 0 224 174 0 65 chr6 72211184 72211276 -110203966 + CT-rich Low_complexity Low_complexity 4 89 0 262 217 16 39 chr6 72211322 72211451 -110203791 + CT-rich Low_complexity Low_complexity 2 127 0 * 461 148 0 82 chr6 72211420 72211616 -110203626 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 273 194 10 39 chr6 72211646 72211749 -110203493 + C-rich Low_complexity Low_complexity 2 101 0 1956 142 0 25 chr6 72211772 72212088 -110203154 - AluSx SINE Alu -4 308 1 905 302 62 25 chr6 72212215 72212619 -110202623 - L2 LINE L2 -420 2894 2476 1090 158 151 21 chr6 72212634 72213056 -110202186 + L1PA16 LINE L1 5001 5492 -674 321 282 51 26 chr6 72213910 72214027 -110201215 - MLT1J1 LTR MaLR -265 181 62 27 49 0 0 chr6 72215686 72215727 -110199515 + AT_rich Low_complexity Low_complexity 1 41 0 1354 232 61 25 chr6 72216229 72216704 -110198538 - L1M4 LINE L1 -2898 3248 2757 8019 225 22 98 chr6 72216711 72221090 -110194152 + L1PA12 LINE L1 10 4057 -3527 3161 153 24 9 chr6 72221191 72221768 -110193474 + L1PA16 LINE L1 5581 6166 0 1044 329 80 39 chr6 72221769 72222534 -110192708 + L2 LINE L2 2535 3313 0 798 302 153 28 chr6 72222530 72222993 -110192249 - L2 LINE L2 -840 2474 1954 * 336 371 129 0 chr6 72223812 72223998 -110191244 + MIR SINE MIR 1 210 -52 182 237 53 0 chr6 72224071 72224109 -110191133 + L2 LINE L2 1191 1230 -2084 270 0 0 0 chr6 72224263 72224293 -110190949 + (CA)n Simple_repeat Simple_repeat 2 31 0 208 390 0 0 chr6 72224953 72225035 -110190207 + MIR SINE MIR 48 129 -133 754 168 8 0 chr6 72225414 72225539 -110189703 - AluJb SINE Alu -186 126 1 1729 181 24 51 chr6 72225875 72226246 -110188996 - MLT1A1 LTR MaLR -4 361 1 250 154 0 19 chr6 72226576 72226628 -110188614 + L1MC3 LINE L1 5917 5967 -1818 631 225 31 6 chr6 72226628 72226788 -110188454 + L1ME1 LINE L1 5998 6161 -5 275 75 25 0 chr6 72226816 72226856 -110188386 - MLT2C2 LTR ERVL 0 464 424 300 347 7 14 chr6 72226872 72227016 -110188226 - L1MC4 LINE L1 -1339 6703 6561 210 222 0 0 chr6 72227041 72227077 -110188165 + (CA)n Simple_repeat Simple_repeat 2 37 0 3211 180 73 74 chr6 72227104 72227860 -110187382 - MER21A LTR ERV1 -29 902 148 3155 112 11 4 chr6 72227860 72228316 -110186926 + THE1C-int LTR MaLR 991 1449 -131 410 191 0 0 chr6 72228418 72228486 -110186756 + Tigger3(Golem) DNA MER2_type 41 108 -2921 * 3237 132 36 10 chr6 72228477 72229061 -110186181 + Tigger3(Golem) DNA MER2_type 2277 2875 -154 1868 156 40 35 chr6 72229110 72229483 -110185759 + THE1C LTR MaLR 1 375 0 288 0 0 0 chr6 72230567 72230599 -110184643 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr6 72230980 72231001 -110184241 + AT_rich Low_complexity Low_complexity 1 21 0 4738 98 5 45 chr6 72231001 72231748 -110183494 - L1PA13 LINE L1 -8 6155 5439 2079 134 7 0 chr6 72232985 72233277 -110181965 + AluSx SINE Alu 3 296 -16 1272 193 56 129 chr6 72235518 72236051 -110179191 - MER67D LTR ERV1 -20 494 1 257 366 98 0 chr6 72236149 72236272 -110178970 + L2 LINE L2 3179 3313 0 6917 58 8 0 chr6 72236285 72237503 -110177739 - L1PA7 LINE L1 -7 6147 4930 369 43 0 0 chr6 72237857 72237904 -110177338 + (CA)n Simple_repeat Simple_repeat 2 48 0 843 231 28 14 chr6 72237906 72238118 -110177124 - MIR SINE MIR -35 227 13 189 74 0 0 chr6 72238449 72238476 -110176766 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 206 283 236 9 chr6 72238482 72238588 -110176654 + L2 LINE L2 3184 3313 0 1009 91 7 14 chr6 72239821 72239964 -110175278 + AluSq/x SINE Alu 1 142 -170 357 362 82 4 chr6 72241873 72242105 -110173137 + MIR SINE MIR 12 261 -1 407 369 127 15 chr6 72242216 72242547 -110172695 - L2 LINE L2 -38 3234 2867 868 269 30 55 chr6 72242625 72242923 -110172319 - MLT1A1 LTR MaLR -59 337 11 1061 162 0 38 chr6 72244138 72244323 -110170919 + LTR26B LTR ERV1 354 531 0 274 330 57 48 chr6 72245682 72245909 -110169333 + MLT1I LTR MaLR 1 229 -180 286 392 49 20 chr6 72246028 72246232 -110169010 + L2 LINE L2 2515 2724 -590 206 331 24 40 chr6 72246288 72246412 -110168830 - L2 LINE L2 -2569 745 624 299 285 63 76 chr6 72246437 72246595 -110168647 - MIR SINE MIR -69 193 38 360 218 0 0 chr6 72246893 72246971 -110168271 + L1PB4 LINE L1 6077 6154 -2 280 358 42 39 chr6 72247269 72247448 -110167794 - MIR3 SINE MIR -6 202 22 499 235 17 84 chr6 72247915 72248094 -110167148 - MIR SINE MIR -34 228 62 825 259 37 0 chr6 72248245 72248461 -110166781 + MER58A DNA MER1_type 1 224 0 24 0 0 0 chr6 72248830 72248854 -110166388 + AT_rich Low_complexity Low_complexity 1 24 0 844 303 197 5 chr6 72248916 72249286 -110165956 + L2 LINE L2 2107 2547 -767 821 195 76 59 chr6 72249321 72249557 -110165685 + HUERS-P1 LTR ERV1 5914 6153 -178 * 907 278 4 34 chr6 72249555 72249821 -110165421 + HUERS-P1 LTR ERV1 5998 6255 -8 853 92 106 21 chr6 72249828 72249970 -110165272 + LTR8A LTR ERV1 1 154 -573 800 172 0 0 chr6 72249984 72250112 -110165130 - FLAM_C SINE Alu -11 132 5 1769 191 221 14 chr6 72250124 72250607 -110164635 + LTR8A LTR ERV1 143 725 -2 643 335 25 56 chr6 72250609 72251052 -110164190 + L2 LINE L2 2644 3073 -240 180 0 0 0 chr6 72251094 72251114 -110164128 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 1178 212 13 59 chr6 72251318 72251624 -110163618 - AluJb SINE Alu -10 292 1 24 0 0 0 chr6 72251818 72251842 -110163400 + AT_rich Low_complexity Low_complexity 1 24 0 6622 183 102 31 chr6 72251869 72253428 -110161814 + MER52A LTR ERV1 1 1755 0 351 289 70 96 chr6 72255008 72255395 -110159847 - L1MEc LINE L1 -4724 1672 1296 1549 311 71 14 chr6 72255551 72256140 -110159102 + MLT2E LTR ERVL 1 623 -5 22 0 0 0 chr6 72256224 72256246 -110158996 + AT_rich Low_complexity Low_complexity 1 22 0 314 342 17 17 chr6 72256522 72256642 -110158600 + L2 LINE L2 3189 3308 -5 282 258 67 22 chr6 72256848 72256937 -110158305 - L1MEc LINE L1 -5448 757 665 1170 147 10 0 chr6 72257402 72257599 -110157643 + L1PB1 LINE L1 3 201 -6662 8969 99 86 6 chr6 72257599 72259587 -110155655 + L1PB1 LINE L1 635 2880 -3983 11428 190 15 12 chr6 72259591 72262818 -110152424 + L1PB1 LINE L1 3256 6507 -360 333 0 0 0 chr6 72262818 72262855 -110152387 + (TG)n Simple_repeat Simple_repeat 2 38 0 11428 190 15 12 chr6 72262855 72263218 -110152024 + L1PB1 LINE L1 6507 6867 0 2151 99 26 7 chr6 72263368 72263670 -110151572 + AluY SINE Alu 3 310 -1 193 29 29 29 chr6 72263747 72263782 -110151460 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr6 72263876 72263901 -110151341 + (CA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 72264004 72264027 -110151215 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr6 72265549 72265587 -110149655 + AT_rich Low_complexity Low_complexity 1 38 0 206 346 89 35 chr6 72265939 72266196 -110149046 + L2 LINE L2 2214 2484 -830 258 128 0 0 chr6 72266382 72266421 -110148821 + MLT1F LTR MaLR 503 541 -1 601 282 114 42 chr6 72267372 72267789 -110147453 - LTR33A LTR ERVL -20 503 27 216 0 0 0 chr6 72269482 72269506 -110145736 + (A)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr6 72269594 72269625 -110145617 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr6 72270305 72270329 -110144913 + (A)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr6 72270417 72270448 -110144794 + AT_rich Low_complexity Low_complexity 1 31 0 309 253 40 10 chr6 72270558 72270657 -110144585 + MLT1F1 LTR MaLR 36 137 -430 503 228 58 141 chr6 72270658 72270934 -110144308 + L1MC3 LINE L1 7199 7451 -334 1466 96 23 0 chr6 72271037 72271256 -110143986 + Tigger1 DNA MER2_type 1749 1972 -446 * 12752 153 48 21 chr6 72271252 72273514 -110141728 + Tigger1 DNA MER2_type 96 2418 0 1248 215 88 7 chr6 72273516 72273823 -110141419 + L1MC3 LINE L1 7454 7785 0 592 292 41 0 chr6 72275351 72275522 -110139720 - MER45A DNA AcHobo 0 178 1 206 290 87 0 chr6 72276671 72276740 -110138502 - MIR SINE MIR -91 171 97 1268 50 6 0 chr6 72279001 72279183 -110136059 - AluY SINE Alu 0 307 125 2291 80 3 3 chr6 72279186 72279497 -110135745 - AluY SINE Alu 0 311 1 192 333 14 14 chr6 72279949 72280021 -110135221 + MIR SINE MIR 35 106 -156 469 266 42 14 chr6 72281221 72281364 -110133878 + MIR SINE MIR 8 154 -108 221 235 0 0 chr6 72281770 72281838 -110133404 + A-rich Low_complexity Low_complexity 1 68 0 832 389 32 7 chr6 72282018 72282721 -110132521 + L2 LINE L2 2598 3313 0 866 217 50 20 chr6 72283286 72283484 -110131758 + MER58A DNA MER1_type 4 207 -17 240 392 51 11 chr6 72284476 72284652 -110130590 + L2 LINE L2 1135 1317 -1997 287 363 0 0 chr6 72284723 72284814 -110130428 + MIR SINE MIR 63 153 -109 674 224 60 22 chr6 72285233 72285416 -110129826 + LTR33 LTR ERVL 332 521 0 699 355 45 31 chr6 72286473 72286921 -110128321 + L1M3d LINE L1 1 454 -5437 299 328 31 21 chr6 72287046 72287205 -110128037 + L1M3d LINE L1 256 674 -5217 594 284 30 57 chr6 72287338 72287672 -110127570 + L1M3d LINE L1 694 1018 -4873 1987 95 59 6 chr6 72287674 72288057 -110127185 - LTR7 LTR ERV1 -2 448 1 2377 120 13 13 chr6 72288057 72288448 -110126794 - HERVH LTR ERV1 0 7713 7323 2705 119 23 0 chr6 72288477 72288872 -110126370 - HERVH LTR ERV1 -2699 5014 4611 980 259 113 7 chr6 72288875 72289289 -110125953 + L1ME1 LINE L1 1023 1480 -4904 614 100 0 0 chr6 72289294 72289384 -110125858 + AluSg/x SINE Alu 217 306 -3 10505 245 43 40 chr6 72289386 72292850 -110122392 + L1ME1 LINE L1 1550 5029 -1373 2122 158 68 2 chr6 72292850 72293250 -110121992 - MSTB LTR MaLR 0 426 1 10505 245 43 40 chr6 72293250 72294463 -110120779 + L1ME1 LINE L1 5029 6237 -165 2968 198 8 63 chr6 72293925 72294628 -110120614 + L1MB1 LINE L1 5740 6404 0 * 357 227 45 53 chr6 72294819 72294942 -110120300 + MER5A DNA MER1_type 49 182 -7 270 0 0 0 chr6 72294995 72295025 -110120217 + (CA)n Simple_repeat Simple_repeat 1 30 0 495 188 23 165 chr6 72295660 72295721 -110119521 - MER21B LTR ERV1 -77 786 718 204 40 0 0 chr6 72295721 72295746 -110119496 + (CAATT)n Simple_repeat Simple_repeat 2 26 0 495 188 23 165 chr6 72295746 72295878 -110119364 - MER21B LTR ERV1 -145 718 631 333 267 158 33 chr6 72295894 72296014 -110119228 - MER21B LTR ERV1 -668 195 61 388 173 93 24 chr6 72296022 72296120 -110119122 - MER21B LTR ERV1 -139 788 631 * 793 212 95 28 chr6 72296106 72296316 -110118926 - MER21B LTR ERV1 -597 266 1 948 308 23 31 chr6 72296512 72296606 -110118636 - LTR40a LTR ERVL -74 445 352 1648 230 94 6 chr6 72296606 72297075 -110118167 + MER67D LTR ERV1 1 510 -4 948 308 23 31 chr6 72297075 72297334 -110117908 - LTR40a LTR ERVL -167 352 95 28 79 0 0 chr6 72297396 72297459 -110117783 + AT_rich Low_complexity Low_complexity 1 63 0 180 320 165 29 chr6 72297489 72297592 -110117650 - L2 LINE L2 -9 3263 3147 192 340 40 10 chr6 72297842 72297942 -110117300 - L2 LINE L2 -517 2797 2695 681 196 46 0 chr6 72298252 72298405 -110116837 + MER67D LTR ERV1 351 510 -4 1342 118 3 141 chr6 72299602 72299899 -110115343 - L1PA15 LINE L1 -3 6162 5907 573 288 112 71 chr6 72300848 72301143 -110114099 + LTR16A LTR ERVL 16 322 -128 238 254 17 0 chr6 72301423 72301482 -110113760 + (CA)n Simple_repeat Simple_repeat 1 60 0 9739 35 34 1 chr6 72302437 72304063 -110111179 + L1P2 LINE L1 4086 5771 -384 22 35 0 0 chr6 72356168 72356197 -110059045 + AT_rich Low_complexity Low_complexity 1 29 0 1667 261 48 56 chr6 72356211 72357066 -110058176 - L1MC5 LINE L1 -62 7899 7052 21 0 0 0 chr6 72357070 72357091 -110058151 + AT_rich Low_complexity Low_complexity 1 21 0 364 330 93 23 chr6 72357295 72357553 -110057689 + L1M4 LINE L1 4744 5019 -1127 888 251 28 77 chr6 72358150 72358476 -110056766 - MLT1H LTR MaLR -217 332 23 25 90 0 0 chr6 72359128 72359195 -110056047 + AT_rich Low_complexity Low_complexity 1 67 0 190 326 23 23 chr6 72359451 72359537 -110055705 + MIR SINE MIR 11 96 -166 417 262 93 47 chr6 72359683 72359897 -110055345 + L2 LINE L2 3086 3309 -4 314 351 39 34 chr6 72360645 72360850 -110054392 + L2 LINE L2 1931 2136 -1178 58 28 0 0 chr6 72361537 72361609 -110053633 + AT_rich Low_complexity Low_complexity 1 72 0 21 57 0 0 chr6 72361714 72361749 -110053493 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr6 72361978 72362010 -110053232 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr6 72362352 72362379 -110052863 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 72363976 72363998 -110051244 + AT_rich Low_complexity Low_complexity 1 22 0 501 233 16 8 chr6 72364395 72364524 -110050718 + L1M4 LINE L1 4776 4905 -1241 3544 43 0 0 chr6 72364524 72364962 -110050280 - L1PA4 LINE L1 -1 6154 5717 427 261 59 31 chr6 72364968 72365190 -110050052 - L1M4 LINE L1 -1381 4765 4538 188 135 27 0 chr6 72365517 72365554 -110049688 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 352 301 68 37 chr6 72365741 72365904 -110049338 - L2 LINE L2 0 3313 3146 1374 263 26 19 chr6 72366150 72366572 -110048670 - LTR40b LTR ERVL -4 458 34 494 83 24 0 chr6 72366684 72366768 -110048474 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 33 0 0 0 chr6 72367152 72367185 -110048057 + AT_rich Low_complexity Low_complexity 1 33 0 781 325 73 19 chr6 72369012 72369629 -110045613 + L2 LINE L2 2656 3301 -12 1559 212 7 7 chr6 72369638 72369935 -110045307 - AluJo SINE Alu -15 297 1 2015 113 3 3 chr6 72370107 72370414 -110044828 - AluSg SINE Alu 0 307 1 290 357 62 8 chr6 72370583 72370712 -110044530 - L2 LINE L2 0 3272 3137 27 29 0 0 chr6 72370869 72370903 -110044339 + AT_rich Low_complexity Low_complexity 1 34 0 234 330 11 0 chr6 72371109 72371200 -110044042 + HAL1 LINE L1 302 393 -2114 381 383 54 4 chr6 72371256 72371496 -110043746 + HAL1 LINE L1 484 735 -1772 1049 257 98 50 chr6 72371623 72372186 -110043056 + HAL1 LINE L1 1533 2129 -378 2120 123 0 0 chr6 72372186 72372479 -110042763 - AluSx SINE Alu -19 293 1 1049 257 98 50 chr6 72372479 72372529 -110042713 + HAL1 LINE L1 2129 2175 -332 361 333 55 55 chr6 72372564 72372801 -110042441 + HAL1 LINE L1 2270 2506 -1 682 281 77 13 chr6 72373452 72373687 -110041555 + LTR16C LTR ERVL 242 491 0 414 335 122 44 chr6 72373768 72374219 -110041023 - L2 LINE L2 -653 2661 2176 368 337 81 39 chr6 72375044 72375427 -110039815 + LTR16C LTR ERVL 93 491 0 435 347 53 14 chr6 72375514 72375799 -110039443 - L2 LINE L2 -528 2786 2491 22 0 0 0 chr6 72376058 72376080 -110039162 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 72376356 72376384 -110038858 + AT_rich Low_complexity Low_complexity 1 28 0 403 307 37 12 chr6 72376442 72376490 -110038752 - MIR SINE MIR 0 262 217 1614 106 0 9 chr6 72376490 72376717 -110038525 - AluSg/x SINE Alu -4 306 82 403 307 37 12 chr6 72376717 72376831 -110038411 - MIR SINE MIR -45 217 96 2747 126 10 0 chr6 72376943 72377355 -110037887 + THE1B-int LTR MaLR 1165 1580 0 2356 153 0 3 chr6 72377355 72377720 -110037522 + THE1B LTR MaLR 1 364 0 196 175 32 0 chr6 72378059 72378122 -110037120 + (TA)n Simple_repeat Simple_repeat 1 65 0 271 191 0 34 chr6 72378159 72378287 -110036955 + (TAAA)n Simple_repeat Simple_repeat 1 123 0 3042 160 82 5 chr6 72379407 72379971 -110035271 - L1MC1 LINE L1 -329 6004 5398 2219 97 3 3 chr6 72381412 72381711 -110033531 - AluSx SINE Alu -13 299 1 22 35 0 0 chr6 72382835 72382864 -110032378 + AT_rich Low_complexity Low_complexity 1 29 0 2325 127 0 17 chr6 72382999 72383346 -110031896 + MER61A LTR ERV1 1 341 -2 1120 220 56 53 chr6 72383467 72383898 -110031344 + Charlie1b DNA MER1_type 7 438 -85 745 246 33 38 chr6 72383898 72384109 -110031133 - MER63A DNA MER1_type 0 210 1 232 265 152 53 chr6 72384682 72384814 -110030428 + MIR SINE MIR 68 212 -50 30 27 0 0 chr6 72384959 72384996 -110030246 + AT_rich Low_complexity Low_complexity 1 37 0 1488 218 27 15 chr6 72388508 72388843 -110026399 - MLT1A1 LTR MaLR -5 360 22 254 194 44 64 chr6 72388964 72389068 -110026174 - MLT1G1 LTR MaLR -221 374 220 268 348 32 25 chr6 72390409 72390688 -110024554 + HAL1b LINE L1 365 645 -703 791 210 64 18 chr6 72391101 72391320 -110023922 + LTR34 LTR ERV1 293 521 -178 23 54 0 0 chr6 72391337 72391374 -110023868 + AT_rich Low_complexity Low_complexity 1 37 0 420 259 15 30 chr6 72391402 72391537 -110023705 + LTR34 LTR ERV1 553 685 -14 207 0 0 0 chr6 72391621 72391644 -110023598 + (CA)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr6 72392349 72392371 -110022871 + AT_rich Low_complexity Low_complexity 1 22 0 1598 198 60 11 chr6 72392751 72393120 -110022122 + L1MB7 LINE L1 5779 6165 -19 315 104 0 0 chr6 72394163 72394211 -110021031 + (CA)n Simple_repeat Simple_repeat 1 48 0 206 152 0 22 chr6 72394609 72394655 -110020587 + CT-rich Low_complexity Low_complexity 2 46 0 25 0 0 0 chr6 72395299 72395324 -110019918 + AT_rich Low_complexity Low_complexity 1 25 0 1315 147 78 17 chr6 72395571 72395802 -110019440 - MSTB1 LTR MaLR 0 432 188 1920 151 20 14 chr6 72395814 72396010 -110019232 - L1PB3 LINE L1 -2 6152 5952 3818 100 11 7 chr6 72396010 72396562 -110018680 - MER41A LTR ERV1 0 554 1 1920 151 20 14 chr6 72396562 72396715 -110018527 - L1PB3 LINE L1 -202 5952 5801 1632 130 11 39 chr6 72396716 72397000 -110018242 - L1PB3 LINE L1 -459 5695 5420 944 220 0 21 chr6 72397005 72397196 -110018046 - MSTB1 LTR MaLR -238 188 2 849 118 0 33 chr6 72397444 72397597 -110017645 - LTR7 LTR ERV1 0 450 303 27 0 0 0 chr6 72397766 72397793 -110017449 + AT_rich Low_complexity Low_complexity 1 27 0 859 155 48 0 chr6 72397793 72397961 -110017281 - L1MA8 LINE L1 -4 6287 6112 2214 82 0 3 chr6 72398252 72398543 -110016699 - AluY SINE Alu -21 290 1 23 54 0 0 chr6 72399704 72399741 -110015501 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 72400767 72400804 -110014438 + AT_rich Low_complexity Low_complexity 1 37 0 1082 224 0 39 chr6 72400994 72401248 -110013994 + AluJo SINE Alu 44 287 -25 32 26 0 0 chr6 72402006 72402045 -110013197 + AT_rich Low_complexity Low_complexity 1 39 0 5810 129 80 2 chr6 72402579 72403508 -110011734 - THE1B-int LTR MaLR -579 1001 1 2546 118 3 8 chr6 72403510 72403874 -110011368 - THE1B LTR MaLR -2 362 1 1512 213 3 0 chr6 72404249 72404535 -110010707 - AluSx SINE Alu -25 287 1 18068 82 6 6 chr6 72405460 72408009 -110007233 - L1P LINE L1 -2586 3560 1011 10246 63 2 1 chr6 72408003 72409332 -110005910 + L1P LINE L1 3548 4878 -1268 * 840 224 94 14 chr6 72409433 72409656 -110005586 - MST-int LTR MaLR -1133 518 278 * 2381 129 31 60 chr6 72409625 72410112 -110005130 - THE1C-int LTR MaLR -1106 474 2 1614 180 61 22 chr6 72410112 72410473 -110004769 - THE1C LTR MaLR 0 375 1 257 317 135 0 chr6 72410477 72410581 -110004661 + MIR SINE MIR 48 165 -97 284 250 0 36 chr6 72410844 72410928 -110004314 - L2 LINE L2 -3 3310 3230 216 0 0 0 chr6 72411017 72411041 -110004201 + (CTATA)n Simple_repeat Simple_repeat 4 27 0 362 275 58 0 chr6 72411587 72411707 -110003535 - MLT1H LTR MaLR -1 548 422 389 317 30 24 chr6 72411802 72411966 -110003276 - MLT1H LTR MaLR -262 287 123 874 228 71 53 chr6 72412221 72412559 -110002683 - MER2 DNA MER2_type 0 344 1 2146 177 18 27 chr6 72412969 72413415 -110001827 + MER65A LTR ERV1 4 445 0 22 0 0 0 chr6 72414482 72414504 -110000738 + AT_rich Low_complexity Low_complexity 1 22 0 354 333 56 12 chr6 72415332 72415494 -109999748 - MIR SINE MIR -15 247 79 1274 276 85 12 chr6 72415598 72415950 -109999292 + MLT1G LTR MaLR 148 536 -54 908 221 4 78 chr6 72415950 72416208 -109999034 + MER8 DNA MER2_type 1 239 0 1274 276 85 12 chr6 72416208 72416268 -109998974 + MLT1G LTR MaLR 536 590 0 290 267 0 0 chr6 72416268 72416328 -109998914 - MIR SINE MIR -191 71 12 6096 242 24 61 chr6 72416423 72417897 -109997345 + L1PA12 LINE L1 2248 3775 -3809 1183 189 65 93 chr6 72417897 72418283 -109996959 - THE1C LTR MaLR 0 375 1 6096 242 24 61 chr6 72418283 72418896 -109996346 + L1PA12 LINE L1 3775 4160 -3424 2046 122 60 28 chr6 72418896 72419249 -109995993 - THE1B LTR MaLR 0 364 1 6096 242 24 61 chr6 72419249 72420097 -109995145 + L1PA12 LINE L1 4160 5038 -2546 3042 193 50 19 chr6 72420100 72420837 -109994405 + L1P LINE L1 6043 6802 -782 * 4372 174 38 22 chr6 72420830 72421675 -109993567 + L1M4 LINE L1 1504 2361 -5204 927 191 10 57 chr6 72421675 72421884 -109993358 - AluSg/x SINE Alu -10 300 102 1471 143 153 10 chr6 72421922 72422230 -109993012 + Tigger4(Zombi) DNA MER2_type 2380 2731 0 653 293 22 0 chr6 72422230 72422530 -109992712 - L1ME LINE L1 -555 5607 5302 229 305 0 0 chr6 72422531 72422626 -109992616 - L1ME LINE L1 -861 5285 5191 28 0 0 0 chr6 72422989 72423017 -109992225 + AT_rich Low_complexity Low_complexity 1 28 0 1319 271 40 16 chr6 72423593 72424175 -109991067 + L1M4 LINE L1 4510 5105 -2460 189 0 0 0 chr6 72424175 72424196 -109991046 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 308 327 99 50 chr6 72424274 72424656 -109990586 + L1M4 LINE L1 6326 6726 -839 640 296 21 26 chr6 72425076 72425309 -109989933 + MLT1E2 LTR MaLR 385 616 -10 1065 224 8 16 chr6 72425317 72425572 -109989670 + MLT1E2-int LTR MaLR 4 256 -1115 35 41 0 0 chr6 72426437 72426486 -109988756 + AT_rich Low_complexity Low_complexity 1 49 0 228 348 43 35 chr6 72426711 72426852 -109988390 - MIR SINE MIR 0 262 121 381 322 187 0 chr6 72427399 72427629 -109987613 + L3b LINE CR1 1102 1374 -209 21 57 0 0 chr6 72428779 72428814 -109986428 + AT_rich Low_complexity Low_complexity 1 35 0 326 196 14 14 chr6 72428816 72428902 -109986340 + FLAM SINE Alu 66 129 -4 23 78 0 0 chr6 72429237 72429288 -109985954 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr6 72429493 72429521 -109985721 + AT_rich Low_complexity Low_complexity 1 28 0 475 283 22 23 chr6 72429858 72430109 -109985133 - MER67D LTR ERV1 0 514 229 892 208 11 29 chr6 72430110 72430381 -109984861 + MSTD LTR MaLR 1 315 -81 396 0 0 0 chr6 72430381 72430425 -109984817 + (TA)n Simple_repeat Simple_repeat 2 45 0 892 208 11 29 chr6 72430425 72430506 -109984736 + MSTD LTR MaLR 315 396 0 * 1110 184 8 82 chr6 72430506 72430754 -109984488 - MER67D LTR ERV1 -284 230 3 206 157 20 39 chr6 72430843 72430894 -109984348 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 25 31 0 0 chr6 72432003 72432035 -109983207 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr6 72432264 72432307 -109982935 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr6 72432401 72432439 -109982803 + AT_rich Low_complexity Low_complexity 1 38 0 343 314 90 16 chr6 72432598 72432853 -109982389 + LTR16C LTR ERVL 198 471 -20 2478 74 3 0 chr6 72434423 72434732 -109980510 - AluSg SINE Alu 0 310 1 589 225 31 62 chr6 72436277 72436519 -109978723 - MER106B DNA MER1_type -2 1057 1 258 373 141 18 chr6 72437740 72438037 -109977205 + L2 LINE L2 2698 3026 -287 23 33 0 0 chr6 72438647 72438677 -109976565 + AT_rich Low_complexity Low_complexity 1 30 0 1601 182 7 37 chr6 72438677 72438974 -109976268 - AluJb SINE Alu -24 288 1 22 0 0 0 chr6 72439621 72439643 -109975599 + AT_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr6 72439740 72439806 -109975436 + AT_rich Low_complexity Low_complexity 1 66 0 2852 12 0 0 chr6 72440066 72440387 -109974855 - L1PA2 LINE L1 -457 5698 5378 3996 9 0 0 chr6 72440387 72440839 -109974403 + L1PA2 LINE L1 5702 6155 0 263 49 24 0 chr6 72441994 72442035 -109973207 + (TTA)n Simple_repeat Simple_repeat 1 42 0 2007 97 3 21 chr6 72442042 72442331 -109972911 - AluY SINE Alu -27 284 1 22 70 0 0 chr6 72442668 72442711 -109972531 + AT_rich Low_complexity Low_complexity 1 43 0 958 234 132 22 chr6 72442979 72443432 -109971810 - MER89 LTR ERV1 -7 552 6 234 244 261 34 chr6 72444160 72444279 -109970963 + MIR SINE MIR 1 146 -116 2267 136 13 5 chr6 72444372 72444746 -109970496 - L1PA13 LINE L1 -1 6162 5786 31 82 0 0 chr6 72445170 72445243 -109969999 + AT_rich Low_complexity Low_complexity 1 73 0 35 41 0 0 chr6 72445789 72445838 -109969404 + AT_rich Low_complexity Low_complexity 1 49 0 504 307 117 15 chr6 72446127 72446332 -109968910 - MLT1K LTR MaLR -10 578 353 26 0 0 0 chr6 72446746 72446772 -109968470 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr6 72447398 72447422 -109967820 + AT_rich Low_complexity Low_complexity 1 24 0 611 305 51 48 chr6 72447793 72448085 -109967157 + MLT1I LTR MaLR 84 376 -33 25 0 0 0 chr6 72449263 72449288 -109965954 + AT_rich Low_complexity Low_complexity 1 25 0 1562 274 46 48 chr6 72449390 72449953 -109965289 + MLT1F1 LTR MaLR 6 567 0 280 284 35 69 chr6 72450243 72450359 -109964883 - MIR SINE MIR -64 144 33 571 137 35 176 chr6 72450549 72450776 -109964466 - THE1C LTR MaLR -65 310 116 2194 125 0 0 chr6 72452210 72452522 -109962720 + AluSx SINE Alu 1 312 0 39 84 0 0 chr6 72452730 72452825 -109962417 + AT_rich Low_complexity Low_complexity 1 95 0 598 134 87 199 chr6 72453118 72453349 -109961893 + MER7A DNA MER2_type 1 203 -143 1157 269 76 70 chr6 72453712 72454225 -109961017 - LTR40a LTR ERVL 0 519 4 5568 140 8 10 chr6 72454758 72455609 -109959633 + L1MA3 LINE L1 4763 5612 -693 2083 144 83 5 chr6 72455609 72456006 -109959236 - MSTA LTR MaLR 0 428 1 5568 140 8 10 chr6 72456006 72456509 -109958733 + L1MA3 LINE L1 5612 6115 -190 212 0 36 0 chr6 72456509 72456537 -109958705 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1153 130 0 0 chr6 72456542 72456703 -109958539 - AluSq SINE Alu -20 293 133 1158 120 11 0 chr6 72456703 72456886 -109958356 + L1MA3 LINE L1 6115 6299 -6 30 27 0 0 chr6 72456886 72456923 -109958319 + AT_rich Low_complexity Low_complexity 1 37 0 1980 141 0 7 chr6 72457360 72457666 -109957576 - AluSg SINE Alu -6 304 1 1043 227 35 51 chr6 72458079 72458438 -109956804 + MLT2B1 LTR ERVL 1 347 -207 312 161 0 0 chr6 72458438 72458500 -109956742 + (TA)n Simple_repeat Simple_repeat 2 63 0 49 32 0 0 chr6 72458509 72458572 -109956670 + AT_rich Low_complexity Low_complexity 1 63 0 261 94 75 19 chr6 72458588 72458641 -109956601 + MLT2B1 LTR ERVL 465 520 0 753 216 204 8 chr6 72461258 72461497 -109953745 + L1MD3 LINE L1 6957 7079 -706 483 250 33 0 chr6 72461529 72461649 -109953593 + MLT1F1 LTR MaLR 1 124 -443 2175 209 50 29 chr6 72461650 72462230 -109953012 + L1MD3 LINE L1 7404 7995 0 636 332 70 23 chr6 72463723 72464109 -109951133 - MLT1H1 LTR MaLR 0 555 152 889 205 20 33 chr6 72464235 72464479 -109950763 - L1M4 LINE L1 -1293 4853 4613 437 244 95 24 chr6 72464517 72464790 -109950452 + L1M3 LINE L1 5159 5459 -721 267 259 95 27 chr6 72464900 72465047 -109950195 + L1ME LINE L1 5685 5841 -329 511 146 42 0 chr6 72465660 72465756 -109949486 - L1MC1 LINE L1 0 6333 6234 1130 196 0 48 chr6 72466028 72466258 -109948984 - AluJo SINE Alu -93 219 1 247 305 86 66 chr6 72466394 72466545 -109948697 + MER69 DNA AcHobo 221 374 -2152 585 247 81 65 chr6 72466885 72467197 -109948045 - L1ME2 LINE L1 -10 6154 5833 213 39 0 0 chr6 72467197 72467223 -109948019 + (TG)n Simple_repeat Simple_repeat 1 26 0 585 247 81 65 chr6 72467223 72467294 -109947948 - L1ME2 LINE L1 -331 5833 5765 248 278 17 0 chr6 72467299 72467536 -109947706 + (TA)n Simple_repeat Simple_repeat 1 241 0 1437 205 57 50 chr6 72467627 72467792 -109947450 - L1ME2 LINE L1 -409 5755 5593 865 197 93 5 chr6 72467792 72467985 -109947257 - MER6B DNA MER2_type 0 210 1 1437 205 57 50 chr6 72467985 72468243 -109946999 - L1ME2 LINE L1 -571 5593 5329 849 271 62 28 chr6 72468242 72468774 -109946468 - L1MEc LINE L1 -3437 2778 2229 * 4044 139 23 2 chr6 72468766 72469574 -109945668 - L1PA14 LINE L1 -12 6149 5305 276 227 57 64 chr6 72469552 72469816 -109945426 - L1MEc LINE L1 -4130 2266 2005 * 345 327 75 0 chr6 72470448 72470486 -109944756 - L1M4 LINE L1 -3525 2621 2587 321 47 0 0 chr6 72470486 72470529 -109944713 + (TG)n Simple_repeat Simple_repeat 2 44 0 345 327 75 0 chr6 72470529 72470649 -109944593 - L1M4 LINE L1 -3559 2587 2451 334 318 51 5 chr6 72470688 72470902 -109944340 - L1M4 LINE L1 -3649 2497 2274 361 231 0 0 chr6 72470962 72471040 -109944202 - L1PA15 LINE L1 -1263 4883 4806 5525 156 27 5 chr6 72471040 72472252 -109942990 + L1PA15 LINE L1 4912 6152 -13 21 26 0 26 chr6 72472252 72472270 -109942972 + AT_rich Low_complexity Low_complexity 1 18 -20 2344 68 3 0 chr6 72472270 72472577 -109942665 - AluY SINE Alu -3 308 1 21 26 0 26 chr6 72472577 72472597 -109942645 + AT_rich Low_complexity Low_complexity 18 38 0 26 93 0 0 chr6 72472633 72472708 -109942534 + AT_rich Low_complexity Low_complexity 1 75 0 248 0 31 0 chr6 72472825 72472857 -109942385 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 25 51 0 0 chr6 72473572 72473611 -109941631 + AT_rich Low_complexity Low_complexity 1 39 0 360 64 0 0 chr6 72474033 72474080 -109941162 + (TG)n Simple_repeat Simple_repeat 1 47 0 22 35 0 0 chr6 72474660 72474689 -109940553 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr6 72474709 72474735 -109940507 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr6 72475861 72475889 -109939353 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 72475914 72475938 -109939304 + AT_rich Low_complexity Low_complexity 1 24 0 1875 122 14 3 chr6 72476096 72476391 -109938851 - AluSq SINE Alu -15 298 1 1626 140 36 111 chr6 72476429 72476815 -109938427 - THE1C LTR MaLR -1 374 18 1380 189 30 27 chr6 72476975 72477276 -109937966 - AluJo SINE Alu -1 311 10 27 73 0 0 chr6 72477549 72477604 -109937638 + AT_rich Low_complexity Low_complexity 1 55 0 23 33 0 0 chr6 72478175 72478205 -109937037 + AT_rich Low_complexity Low_complexity 1 30 0 1421 173 75 7 chr6 72478907 72479202 -109936040 - L1MC/D LINE L1 -733 5600 5286 2029 240 66 32 chr6 72479261 72479424 -109935818 + L1M4 LINE L1 4549 4705 -1441 7119 222 45 27 chr6 72479424 72481148 -109934094 - MER52A LTR ERV1 0 1755 1 2029 240 66 32 chr6 72481148 72481693 -109933549 + L1M4 LINE L1 4705 5281 -865 26 0 0 0 chr6 72481693 72481719 -109933523 + AT_rich Low_complexity Low_complexity 1 26 0 22 106 0 0 chr6 72482012 72482097 -109933145 + AT_rich Low_complexity Low_complexity 1 85 0 265 222 53 23 chr6 72482115 72482286 -109932956 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 217 317 24 0 chr6 72482644 72482726 -109932516 + L2 LINE L2 3189 3272 0 22 0 0 0 chr6 72483974 72483996 -109931246 + AT_rich Low_complexity Low_complexity 1 22 0 1532 217 0 10 chr6 72484299 72484612 -109930630 - AluSg SINE Alu 0 310 1 264 329 58 7 chr6 72485139 72485276 -109929966 + MLT1E LTR MaLR 1 144 -510 1111 282 60 12 chr6 72485332 72485704 -109929538 + MLT1E LTR MaLR 201 594 -1 21 0 0 0 chr6 72486101 72486122 -109929120 + AT_rich Low_complexity Low_complexity 1 21 0 432 297 131 38 chr6 72486727 72487040 -109928202 + MLT1J2 LTR MaLR 69 410 -40 22 0 0 0 chr6 72487384 72487406 -109927836 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 72487680 72487710 -109927532 + AT_rich Low_complexity Low_complexity 1 30 0 282 179 0 0 chr6 72488419 72488475 -109926767 + (TA)n Simple_repeat Simple_repeat 1 56 0 303 18 0 107 chr6 72488483 72488539 -109926703 - L1M1 LINE L1 -479 5825 5776 1716 119 157 0 chr6 72488958 72489244 -109925998 + THE1-int LTR MaLR 214 544 -1036 825 92 0 0 chr6 72489348 72489468 -109925774 + (TA)n Simple_repeat Simple_repeat 2 121 0 2710 195 31 15 chr6 72490103 72490719 -109924523 + L1MC1 LINE L1 5689 6314 -19 2102 126 0 42 chr6 72490895 72491251 -109923991 - L1MA3 LINE L1 -455 5850 5510 2233 112 56 11 chr6 72491251 72491618 -109923624 + L1MA3 LINE L1 5914 6305 0 525 378 99 3 chr6 72491981 72492336 -109922906 - L2 LINE L2 -815 2499 2111 878 337 75 11 chr6 72493064 72493779 -109921463 - L1ME3 LINE L1 -105 6057 5297 21 0 0 0 chr6 72493863 72493884 -109921358 + AT_rich Low_complexity Low_complexity 1 21 0 219 336 17 26 chr6 72494289 72494405 -109920837 + L2 LINE L2 72 186 -3128 360 352 99 44 chr6 72494659 72495125 -109920117 + L2 LINE L2 2633 3126 -187 23 54 0 0 chr6 72495691 72495728 -109919514 + AT_rich Low_complexity Low_complexity 1 37 0 819 234 64 8 chr6 72495923 72496158 -109919084 + L1MD3 LINE L1 7733 7980 -15 6684 246 109 34 chr6 72496320 72500079 -109915163 + L1MA4A LINE L1 7 4040 -2808 6970 189 32 16 chr6 72500109 72502157 -109913085 + L1MA4A LINE L1 4416 6501 -504 206 189 0 38 chr6 72502172 72502225 -109913017 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 798 138 51 0 chr6 72502357 72502495 -109912747 + L1MA4A LINE L1 6497 6641 -364 201 344 41 87 chr6 72503246 72503441 -109911801 + L3 LINE CR1 1382 1567 -10 21 0 0 0 chr6 72504244 72504265 -109910977 + AT_rich Low_complexity Low_complexity 1 21 0 280 211 150 90 chr6 72504685 72504818 -109910424 + L2 LINE L2 3149 3289 -24 1691 165 95 40 chr6 72505519 72505918 -109909324 + L1MB1 LINE L1 5745 6165 -3 450 79 0 0 chr6 72506145 72506208 -109909034 + (TCCA)n Simple_repeat Simple_repeat 3 65 0 27 73 0 0 chr6 72506427 72506482 -109908760 + AT_rich Low_complexity Low_complexity 1 55 0 3983 145 103 20 chr6 72507279 72508607 -109906635 + pTR5 LTR ERV1 741 2605 -1 25 31 0 0 chr6 72510199 72510231 -109905011 + AT_rich Low_complexity Low_complexity 1 32 0 212 368 63 0 chr6 72510805 72510900 -109904342 + L2 LINE L2 3172 3272 0 267 273 15 0 chr6 72511368 72511434 -109903808 - MER2 DNA MER2_type -14 331 265 1280 141 10 0 chr6 72511470 72511662 -109903580 - MER2 DNA MER2_type -151 194 1 1098 201 19 89 chr6 72511662 72511976 -109903266 - L1MA9 LINE L1 -44 6268 5977 21 36 0 0 chr6 72512028 72512056 -109903186 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr6 72512255 72512293 -109902949 + AT_rich Low_complexity Low_complexity 1 38 0 2060 226 22 15 chr6 72513830 72514294 -109900948 + MLT1C LTR MaLR 1 467 0 2040 156 122 10 chr6 72514455 72514840 -109900402 + MSTA LTR MaLR 1 428 0 4202 270 57 22 chr6 72515286 72515440 -109899802 - L1PBa LINE L1 -5220 1643 1496 2080 160 33 0 chr6 72515440 72515803 -109899439 + THE1C LTR MaLR 1 375 0 4202 270 57 22 chr6 72515803 72517968 -109897274 - L1PBa LINE L1 -5367 1496 6 266 318 0 0 chr6 72518337 72518400 -109896842 + MIR SINE MIR 10 72 -190 631 156 22 67 chr6 72518417 72518552 -109896690 - FLAM_C SINE Alu -3 130 2 189 0 0 0 chr6 72520297 72520318 -109894924 + (T)n Simple_repeat Simple_repeat 1 21 0 324 310 0 0 chr6 72521438 72521538 -109893704 - MER92A-int LTR ERV1 -4097 839 740 304 97 32 0 chr6 72521674 72521736 -109893506 + T-rich Low_complexity Low_complexity 4 67 0 462 18 0 0 chr6 72522882 72522937 -109892305 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2549 234 29 35 chr6 72522937 72523708 -109891534 - L1M4 LINE L1 -1211 4935 4170 5016 39 0 0 chr6 72523710 72524304 -109890938 - L1PA5 LINE L1 -1 6153 5560 3232 82 24 2 chr6 72524304 72524767 -109890475 + L1P LINE L1 1949 2421 -3725 23 0 0 0 chr6 72525446 72525469 -109889773 + AT_rich Low_complexity Low_complexity 1 23 0 374 313 9 76 chr6 72527114 72527338 -109887904 - MER92A-int LTR ERV1 -4430 506 298 1053 223 78 78 chr6 72527964 72528376 -109886866 - MER92A LTR ERV1 0 412 1 207 69 0 0 chr6 72528382 72528411 -109886831 + (T)n Simple_repeat Simple_repeat 1 29 0 1608 199 88 44 chr6 72528456 72528868 -109886374 - MSTB1 LTR MaLR -8 418 1 248 287 36 62 chr6 72529110 72529305 -109885937 - LTR33 LTR ERVL -4 517 328 360 354 11 17 chr6 72529388 72529566 -109885676 - LTR33 LTR ERVL -344 177 1 287 287 8 25 chr6 72529866 72529988 -109885254 - L1ME2 LINE L1 -19 6145 6026 41443 40 2 2 chr6 72530049 72535915 -109879327 - L1PA3 LINE L1 -3 6152 286 28 61 0 0 chr6 72536026 72536075 -109879167 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr6 72536252 72536280 -109878962 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 72536482 72536504 -109878738 + AT_rich Low_complexity Low_complexity 1 22 0 2098 174 13 13 chr6 72536750 72537140 -109878102 - MLT1B LTR MaLR 0 390 1 1359 301 53 78 chr6 72539000 72539217 -109876025 + Charlie2b DNA MER1_type 14 235 -2547 2463 56 0 7 chr6 72539217 72539520 -109875722 + AluY SINE Alu 1 301 -10 1359 301 53 78 chr6 72539520 72540397 -109874845 + Charlie2b DNA MER1_type 235 1081 -1701 2509 43 3 10 chr6 72541352 72541654 -109873588 - AluY SINE Alu -11 300 1 260 27 27 0 chr6 72541816 72541853 -109873389 + (TG)n Simple_repeat Simple_repeat 2 39 0 243 206 0 41 chr6 72541865 72541938 -109873304 + L1MC4 LINE L1 6640 6709 -1333 1640 209 17 21 chr6 72542096 72542545 -109872697 - MLT1D-int LTR MaLR -821 550 1 845 282 107 50 chr6 72542545 72542875 -109872367 - MLT1D LTR MaLR -2 503 136 4102 190 23 14 chr6 72542875 72543660 -109871582 - MER54B LTR ERVL 0 793 2 845 282 107 50 chr6 72543660 72543804 -109871438 - MLT1D LTR MaLR -369 136 2 548 259 74 91 chr6 72546036 72546220 -109869022 - L2 LINE L2 -52 3261 3084 1690 112 13 0 chr6 72546220 72546452 -109868790 + AluSx SINE Alu 54 288 -24 548 259 74 91 chr6 72546452 72546630 -109868612 - L2 LINE L2 -229 3084 2905 283 216 45 28 chr6 72546697 72546873 -109868369 + (TA)n Simple_repeat Simple_repeat 1 179 0 30 0 0 0 chr6 72546878 72546908 -109868334 + AT_rich Low_complexity Low_complexity 1 30 0 381 326 63 89 chr6 72547576 72548294 -109866948 - L2 LINE L2 -213 3100 2393 68 65 0 0 chr6 72548383 72548507 -109866735 + AT_rich Low_complexity Low_complexity 1 124 0 405 227 239 37 chr6 72549921 72550084 -109865158 - MIR SINE MIR -1 261 66 21 57 0 0 chr6 72550189 72550224 -109865018 + AT_rich Low_complexity Low_complexity 1 35 0 186 218 91 0 chr6 72551307 72551362 -109863880 + MIR SINE MIR 147 206 -56 275 323 32 0 chr6 72551366 72551459 -109863783 - MIR SINE MIR -7 255 160 326 263 16 80 chr6 72551488 72551662 -109863580 - MIR SINE MIR 0 262 35 182 125 0 50 chr6 72551718 72551758 -109863484 + (TTA)n Simple_repeat Simple_repeat 3 40 0 1268 242 108 5 chr6 72551853 72552287 -109862955 - L1 LINE L1 -2890 3256 2778 230 200 0 0 chr6 72552330 72552380 -109862862 + L1MC4 LINE L1 6653 6702 -1340 23 0 0 0 chr6 72554008 72554031 -109861211 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr6 72556073 72556108 -109859134 + AT_rich Low_complexity Low_complexity 1 35 0 541 383 65 27 chr6 72556421 72557009 -109858233 - L2 LINE L2 -1764 1550 941 340 202 128 7 chr6 72557122 72557267 -109857975 - MER110 LTR ERV1 0 468 316 207 306 0 14 chr6 72558189 72558261 -109856981 + GA-rich Low_complexity Low_complexity 2 72 0 311 404 0 0 chr6 72558825 72558934 -109856308 + L2 LINE L2 3164 3272 0 1155 268 67 7 chr6 72559111 72559544 -109855698 - MER97a DNA MER1_type? -5 889 431 766 247 30 51 chr6 72559605 72559750 -109855492 - MER97c DNA MER1_type? -757 333 196 1589 191 7 13 chr6 72559750 72560048 -109855194 + AluJo SINE Alu 4 299 -13 766 247 30 51 chr6 72560048 72560198 -109855044 - MER97c DNA MER1_type? -894 196 44 1971 94 25 7 chr6 72560496 72560772 -109854470 + AluSc SINE Alu 16 296 -13 316 275 92 48 chr6 72561884 72562091 -109853151 - L1ME LINE L1 -304 5817 5602 1869 141 0 32 chr6 72562165 72562478 -109852764 + AluSx SINE Alu 5 307 -5 780 245 42 0 chr6 72562505 72562697 -109852545 + MER3 DNA MER1_type 9 208 -1 286 193 15 37 chr6 72562861 72562996 -109852246 + GA-rich Low_complexity Low_complexity 2 133 0 228 335 39 78 chr6 72563553 72563783 -109851459 + LTR67 LTR ERVL 38 258 -299 235 277 208 38 chr6 72563918 72564077 -109851165 + LTR67 LTR ERVL 372 557 0 396 329 38 25 chr6 72564734 72564892 -109850350 - MER5B DNA MER1_type -15 163 4 24 32 0 0 chr6 72566087 72566118 -109849124 + AT_rich Low_complexity Low_complexity 1 31 0 2268 230 85 68 chr6 72566151 72567752 -109847490 - MER65-int LTR ERV1 -1349 5249 2009 355 265 10 0 chr6 72567972 72568074 -109847168 - MER34 LTR ERV1 -305 237 135 2823 16 0 0 chr6 72568097 72568413 -109846829 - AluYb8 SINE Alu -2 316 1 250 229 73 0 chr6 72568417 72568513 -109846729 - MER65-int LTR ERV1 -2496 2375 2273 4344 147 9 70 chr6 72568684 72569527 -109845715 - LTR25 LTR ERV1 -2 792 1 728 208 13 0 chr6 72569527 72569686 -109845556 - LTR25-int LTR ERV1 0 6996 6836 215 174 0 22 chr6 72569892 72569938 -109845304 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1671 141 0 93 chr6 72569950 72570262 -109844980 + AluSx SINE Alu 3 285 -27 427 219 58 80 chr6 72570643 72570780 -109844462 + MLT1H LTR MaLR 410 543 -6 2249 109 3 10 chr6 72571906 72572218 -109843024 + AluSg SINE Alu 1 310 0 21 0 0 0 chr6 72572522 72572543 -109842699 + AT_rich Low_complexity Low_complexity 1 21 0 294 123 0 0 chr6 72573965 72574022 -109841220 + (A)n Simple_repeat Simple_repeat 1 57 0 189 0 0 0 chr6 72575970 72575991 -109839251 + (A)n Simple_repeat Simple_repeat 1 21 0 1136 254 40 43 chr6 72575995 72576346 -109838896 + MLT1B LTR MaLR 39 388 -2 1103 171 4 37 chr6 72576368 72576614 -109838628 - MER52A LTR ERV1 0 1755 1518 25 51 0 0 chr6 72576778 72576817 -109838425 + AT_rich Low_complexity Low_complexity 1 39 0 326 256 124 16 chr6 72577639 72577760 -109837482 - MER58B DNA MER1_type -1 340 207 839 278 40 4 chr6 72577985 72578233 -109837009 - MER110 LTR ERV1 -23 468 212 884 332 46 10 chr6 72578700 72579110 -109836132 + LTR16A LTR ERVL 21 445 -5 506 272 96 57 chr6 72579113 72579414 -109835828 + HERV16 LTR ERVL 1 313 -4683 244 296 30 45 chr6 72579645 72579777 -109835465 + L1MCc LINE L1 248 377 -6046 745 281 66 75 chr6 72580095 72580522 -109834720 + L1MCc LINE L1 837 1259 -5164 864 270 104 44 chr6 72580542 72581217 -109834025 + L1MCc LINE L1 1395 2109 -4832 532 293 81 9 chr6 72581277 72581612 -109833630 + L1MCc LINE L1 3057 3415 -3526 777 311 47 30 chr6 72582007 72582345 -109832897 + LTR16A LTR ERVL 103 446 -4 26 50 0 0 chr6 72582969 72583009 -109832233 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr6 72583027 72583057 -109832185 + AT_rich Low_complexity Low_complexity 1 30 0 6705 114 0 0 chr6 72583149 72584162 -109831080 - L1PA2 LINE L1 -4 6151 5156 517 258 6 82 chr6 72584234 72584416 -109830826 - L2 LINE L2 0 3313 3146 536 239 42 30 chr6 72584416 72584583 -109830659 - MER58B DNA MER1_type -3 338 170 421 290 86 6 chr6 72584583 72584745 -109830497 - L2 LINE L2 -178 3135 2961 777 163 0 0 chr6 72584945 72585068 -109830174 + AluSg/x SINE Alu 170 292 -20 5310 151 16 5 chr6 72585326 72586824 -109828418 - L1PA15 LINE L1 -3 6813 5304 11605 233 27 34 chr6 72587217 72590709 -109824533 - L1PA15 LINE L1 -1489 5308 1802 2677 295 31 66 chr6 72590809 72591879 -109823363 + L1PA13 LINE L1 347 1378 -5409 4402 207 43 49 chr6 72591983 72592524 -109822718 + L1MCa LINE L1 449 992 -5615 1922 156 7 0 chr6 72592524 72592832 -109822410 - AluSx SINE Alu -2 310 1 4402 207 43 49 chr6 72592832 72593627 -109821615 + L1MCa LINE L1 992 1968 -4639 6979 191 58 29 chr6 72594035 72595200 -109820042 - L1MCa LINE L1 -4137 2289 1159 2061 133 7 0 chr6 72595200 72595508 -109819734 + AluSx SINE Alu 1 310 -2 6979 191 58 29 chr6 72595508 72596467 -109818775 - L1MCa LINE L1 -5267 1159 26 2035 127 3 3 chr6 72596589 72596888 -109818354 + AluSx SINE Alu 1 299 -13 24 53 0 0 chr6 72597233 72597271 -109817971 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr6 72598178 72598217 -109817025 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr6 72598570 72598599 -109816643 + AT_rich Low_complexity Low_complexity 1 29 0 273 293 98 12 chr6 72598748 72598912 -109816330 - L1ME LINE L1 -413 5708 5531 22 35 0 0 chr6 72598973 72599002 -109816240 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr6 72599921 72599958 -109815284 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 72600147 72600170 -109815072 + AT_rich Low_complexity Low_complexity 1 23 0 2017 111 0 10 chr6 72600204 72600493 -109814749 + AluSx SINE Alu 1 286 -26 2014 166 13 23 chr6 72600585 72600976 -109814266 + L1MA7 LINE L1 5899 6285 -6 307 280 159 0 chr6 72601463 72601620 -109813622 - MIR SINE MIR -8 254 73 2411 65 0 0 chr6 72601774 72602081 -109813161 - AluY SINE Alu -1 310 4 25 31 0 0 chr6 72602121 72602153 -109813089 + AT_rich Low_complexity Low_complexity 1 32 0 2054 123 10 7 chr6 72603350 72603660 -109811582 + AluSx SINE Alu 1 311 -1 259 177 8 169 chr6 72603927 72604005 -109811237 - MER69 DNA AcHobo -15 2511 2461 2016 77 51 4 chr6 72604005 72604278 -109810964 - AluY SINE Alu -25 286 1 259 177 8 169 chr6 72604278 72604329 -109810913 - MER69 DNA AcHobo -65 2461 2403 21 0 0 0 chr6 72604857 72604878 -109810364 + AT_rich Low_complexity Low_complexity 1 21 0 11392 191 23 12 chr6 72604995 72606054 -109809188 - L1MA2 LINE L1 0 6304 5259 2081 168 70 0 chr6 72606054 72606454 -109808788 + MSTA LTR MaLR 1 428 0 11392 191 23 12 chr6 72606454 72609016 -109806226 - L1MA2 LINE L1 -1045 5259 2632 2205 179 31 9 chr6 72609016 72609435 -109805807 - MSTA LTR MaLR 0 428 1 5565 223 26 10 chr6 72609435 72610584 -109804658 - MSTA-int LTR MaLR 0 1651 485 3810 204 35 12 chr6 72610554 72611286 -109803956 + L1M1 LINE L1 72 820 -6745 * 535 292 153 5 chr6 72611438 72611647 -109803595 - L1MD1 LINE L1 -38 6204 5965 * 569 218 42 124 chr6 72611641 72611932 -109803310 - L1M4 LINE L1 -2365 3781 3519 2372 68 3 3 chr6 72611932 72612227 -109803015 + AluY SINE Alu 1 295 -16 569 218 42 124 chr6 72612227 72612265 -109802977 - L1M4 LINE L1 -2627 3519 3479 209 248 28 28 chr6 72612531 72612672 -109802570 + (TTTA)n Simple_repeat Simple_repeat 2 142 0 863 254 70 39 chr6 72612673 72613003 -109802239 + L1ME2 LINE L1 5816 6155 -9 1690 234 15 10 chr6 72613392 72613786 -109801456 - MSTD LTR MaLR 0 396 1 584 209 70 9 chr6 72613938 72614264 -109800978 + MSTD LTR MaLR 3 394 -2 24 67 0 0 chr6 72614298 72614343 -109800899 + AT_rich Low_complexity Low_complexity 1 45 0 27 29 0 0 chr6 72614799 72614833 -109800409 + AT_rich Low_complexity Low_complexity 1 34 0 2045 158 127 0 chr6 72614898 72615277 -109799965 + MSTA LTR MaLR 1 427 -1 2028 134 10 0 chr6 72615595 72615901 -109799341 - AluSx SINE Alu -1 311 3 1436 250 11 14 chr6 72616220 72616584 -109798658 + MLT1A1 LTR MaLR 1 363 -2 6315 249 43 19 chr6 72616588 72618158 -109797084 + MLT1A1-int LTR MaLR 3 1618 -117 2222 103 3 0 chr6 72618158 72618458 -109796784 + AluSx SINE Alu 1 301 -11 6315 249 43 19 chr6 72618458 72618579 -109796663 + MLT1A1-int LTR MaLR 1618 1735 0 1476 222 42 22 chr6 72618579 72618935 -109796307 + MLT1A1 LTR MaLR 1 363 -2 23 0 0 0 chr6 72619178 72619201 -109796041 + AT_rich Low_complexity Low_complexity 1 23 0 971 237 61 98 chr6 72619552 72619928 -109795314 + MER57A LTR ERV1 42 403 0 242 306 24 24 chr6 72620207 72620292 -109794950 + L2 LINE L2 3227 3311 -2 222 105 0 0 chr6 72620447 72620485 -109794757 + (TC)n Simple_repeat Simple_repeat 2 39 0 275 180 16 33 chr6 72621925 72621986 -109793256 + MLT1H1 LTR MaLR 57 116 -439 363 271 29 65 chr6 72623532 72623702 -109791540 + MIR SINE MIR 65 228 -34 284 47 0 23 chr6 72623743 72623786 -109791456 + (CA)n Simple_repeat Simple_repeat 1 42 0 1003 303 151 15 chr6 72627310 72627911 -109787331 + L2 LINE L2 1249 1931 -1383 1747 268 67 53 chr6 72627927 72629396 -109785846 - L1MCb LINE L1 -2863 3701 2103 1863 159 72 0 chr6 72629396 72629729 -109785513 - MER46B DNA MER2_type 0 236 5 1747 268 67 53 chr6 72629729 72629975 -109785267 - L1MCb LINE L1 -4461 2103 1862 436 258 65 65 chr6 72629966 72630183 -109785059 - L1MCb LINE L1 -5853 192 4 * 27 73 0 0 chr6 72631328 72631383 -109783859 + AT_rich Low_complexity Low_complexity 1 55 0 29 0 0 0 chr6 72631568 72631597 -109783645 + AT_rich Low_complexity Low_complexity 1 29 0 253 167 0 0 chr6 72633568 72633610 -109781632 + THE1C-int LTR MaLR 1326 1367 -213 26 64 0 0 chr6 72633744 72633791 -109781451 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr6 72634100 72634130 -109781112 + AT_rich Low_complexity Low_complexity 1 30 0 2040 150 16 44 chr6 72634232 72634618 -109780624 + THE1C LTR MaLR 1 375 0 9070 124 70 21 chr6 72634618 72636124 -109779118 + THE1C-int LTR MaLR 1 1580 0 2237 132 5 44 chr6 72636126 72636513 -109778729 + THE1C LTR MaLR 4 375 0 585 189 0 0 chr6 72636720 72636810 -109778432 + 5S rRNA rRNA 1 90 -31 2115 187 32 11 chr6 72637611 72638045 -109777197 - L1MA8 LINE L1 -275 6016 5574 1578 173 29 10 chr6 72638526 72638832 -109776410 - L1PA16 LINE L1 -3 6163 5852 323 176 11 0 chr6 72638910 72639001 -109776241 + (TA)n Simple_repeat Simple_repeat 2 93 0 466 305 96 0 chr6 72639742 72639939 -109775303 - MIR SINE MIR 0 262 47 26 50 0 0 chr6 72640678 72640718 -109774524 + AT_rich Low_complexity Low_complexity 1 40 0 307 200 0 0 chr6 72641206 72641266 -109773976 - MER53 DNA DNA -1 188 129 2138 98 28 3 chr6 72641422 72641708 -109773534 - AluSq SINE Alu -15 298 6 21 36 0 0 chr6 72641714 72641742 -109773500 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr6 72642117 72642145 -109773097 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr6 72642674 72642698 -109772544 + AT_rich Low_complexity Low_complexity 1 24 0 227 316 18 0 chr6 72642793 72642850 -109772392 - L2 LINE L2 -61 3211 3154 198 71 0 0 chr6 72642957 72642985 -109772257 + (TG)n Simple_repeat Simple_repeat 1 28 0 213 367 37 9 chr6 72642994 72643103 -109772139 - L2 LINE L2 -488 2826 2715 21 0 0 0 chr6 72643610 72643631 -109771611 + AT_rich Low_complexity Low_complexity 1 21 0 251 297 0 0 chr6 72643640 72643704 -109771538 + GA-rich Low_complexity Low_complexity 4 67 0 3020 100 33 13 chr6 72645005 72645465 -109769777 + L1PA11 LINE L1 5706 6174 0 21 0 0 0 chr6 72646143 72646164 -109769078 + AT_rich Low_complexity Low_complexity 1 21 0 611 99 11 0 chr6 72647059 72647150 -109768092 + L1MA2 LINE L1 6211 6302 -2 24 0 0 0 chr6 72647151 72647175 -109768067 + AT_rich Low_complexity Low_complexity 1 24 0 4094 179 33 21 chr6 72647223 72648787 -109766455 - L1MA8 LINE L1 -5 7705 6113 2532 119 31 31 chr6 72648806 72649253 -109765989 - L1MA1 LINE L1 -4 6298 5852 5913 9 3 10 chr6 72649295 72649311 -109765931 - L1HS LINE L1 -3 6152 6137 333 75 30 15 chr6 72649311 72649378 -109765864 + (TTTTA)n Simple_repeat Simple_repeat 4 71 0 5913 9 3 10 chr6 72649378 72650046 -109765196 - L1HS LINE L1 -18 6137 5473 1744 251 45 0 chr6 72650025 72650491 -109764751 - L1MA8 LINE L1 -3208 4357 3871 * 966 248 0 5 chr6 72650491 72650697 -109764545 + MER2 DNA MER2_type 1 205 -140 205 49 0 49 chr6 72650697 72650738 -109764504 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 290 339 0 0 chr6 72650739 72650804 -109764438 + MER2 DNA MER2_type 281 345 0 9219 227 56 22 chr6 72650805 72651395 -109763847 - L1MA8 LINE L1 -1970 5595 5027 5304 147 39 4 chr6 72651395 72652983 -109762259 - L1PA15 LINE L1 -8 6157 4530 9219 227 56 22 chr6 72652983 72655380 -109759862 - L1MA8 LINE L1 -2538 5027 3177 6851 244 49 42 chr6 72655373 72655455 -109759787 - L1PA13 LINE L1 -4599 2188 2108 * 422 48 0 16 chr6 72655455 72655517 -109759725 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 6851 244 49 42 chr6 72655517 72657263 -109757979 - L1PA13 LINE L1 -4679 2108 347 2631 269 65 39 chr6 72657328 72658549 -109756693 - L1MA8 LINE L1 -4388 3177 1926 1288 307 42 38 chr6 72658635 72659208 -109756034 - L1MA8 LINE L1 -6449 1040 466 1943 208 40 14 chr6 72659889 72660385 -109754857 + L1MA8 LINE L1 5783 6291 0 232 211 35 0 chr6 72660388 72660445 -109754797 + GA-rich Low_complexity Low_complexity 4 62 0 233 293 17 0 chr6 72660864 72660922 -109754320 + L2 LINE L2 3251 3309 -4 1867 217 33 81 chr6 72660937 72661518 -109753724 - MLT2B3 LTR ERVL -1 553 1 180 0 0 0 chr6 72661877 72661897 -109753345 + (A)n Simple_repeat Simple_repeat 1 20 0 403 211 352 0 chr6 72662009 72662151 -109753091 + MLT1D LTR MaLR 314 505 0 1724 133 85 28 chr6 72662636 72662989 -109752253 + THE1C LTR MaLR 3 375 0 24 85 0 0 chr6 72663038 72663097 -109752145 + AT_rich Low_complexity Low_complexity 1 59 0 272 389 20 0 chr6 72667050 72667199 -109748043 - MIR SINE MIR -58 204 53 220 278 0 0 chr6 72667460 72667514 -109747728 + (CATAT)n Simple_repeat Simple_repeat 4 57 0 216 0 0 0 chr6 72667763 72667787 -109747455 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 10046 53 6 79 chr6 72667787 72669262 -109745980 - SVA Other Other -17 1369 2 180 0 0 0 chr6 72669263 72669283 -109745959 + (GGGAGA)n Simple_repeat Simple_repeat 2 21 0 236 290 70 20 chr6 72669343 72669443 -109745799 - L2 LINE L2 0 3313 3209 2182 203 14 33 chr6 72669480 72669969 -109745273 - MER31A LTR ERV1 0 485 6 576 237 15 7 chr6 72669992 72670127 -109745115 + L1M4 LINE L1 14 149 -6393 2309 226 66 79 chr6 72670131 72670964 -109744278 + L1M4 LINE L1 372 1193 -5349 1499 221 35 30 chr6 72670959 72671412 -109743830 + L1MB7 LINE L1 5735 6183 -1 * 2604 200 37 96 chr6 72671528 72672350 -109742892 - MER21A LTR ERV1 -19 912 187 204 40 0 0 chr6 72672368 72672393 -109742849 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 634 154 140 21 chr6 72672393 72672420 -109742822 - MER21A LTR ERV1 -771 160 138 207 0 0 0 chr6 72672420 72672443 -109742799 + (GA)n Simple_repeat Simple_repeat 2 24 0 634 154 140 21 chr6 72672443 72672558 -109742684 - MER21A LTR ERV1 -793 138 1 1928 188 0 19 chr6 72672789 72673161 -109742081 - MLT1A1 LTR MaLR 0 365 1 539 40 0 27 chr6 72673181 72673256 -109741986 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 21 36 0 0 chr6 72674860 72674888 -109740354 + AT_rich Low_complexity Low_complexity 1 28 0 1373 301 16 50 chr6 72676080 72676695 -109738547 + L1MEc LINE L1 45 638 -5758 1361 204 10 43 chr6 72676951 72677250 -109737992 - AluJo SINE Alu -22 290 2 563 260 69 8 chr6 72677476 72677670 -109737572 + L1MC/D LINE L1 5443 5642 -539 816 230 109 45 chr6 72677725 72678056 -109737186 - L1MEc LINE L1 -4616 2105 1754 * 1926 43 0 0 chr6 72678047 72678280 -109736962 - L1P3 LINE L1 -409 5745 5513 894 273 129 15 chr6 72678299 72678826 -109736416 - L1MEc LINE L1 -4849 1691 1105 514 194 0 0 chr6 72678848 72678946 -109736296 + FLAM_A SINE Alu 41 138 -4 1887 46 50 4 chr6 72679059 72679300 -109735942 - AluY SINE Alu -59 252 1 23 33 0 0 chr6 72679862 72679892 -109735350 + AT_rich Low_complexity Low_complexity 1 30 0 246 32 0 0 chr6 72680051 72680066 -109735176 + (CA)n Simple_repeat Simple_repeat 1 46 0 246 32 0 0 chr6 72680066 72680097 -109735145 + (CA)n Simple_repeat Simple_repeat 2 32 0 503 299 15 54 chr6 72680274 72680478 -109734764 - L1MEc LINE L1 -6330 210 15 * 1446 272 42 20 chr6 72680456 72681000 -109734242 + L1ME1 LINE L1 5608 6163 -3 243 259 17 0 chr6 72681903 72681961 -109733281 + L2 LINE L2 3250 3308 -5 191 284 54 0 chr6 72682526 72682600 -109732642 + MIR SINE MIR 77 154 -108 1862 231 14 7 chr6 72683045 72683460 -109731782 - L1MA9 LINE L1 -153 6159 5742 268 214 0 82 chr6 72684727 72684825 -109730417 + L1MC4 LINE L1 6614 6703 -1339 232 151 0 38 chr6 72684795 72684848 -109730394 - L1MC4 LINE L1 -1339 6703 6653 * 261 0 0 0 chr6 72684904 72684933 -109730309 + (TG)n Simple_repeat Simple_repeat 2 30 0 558 275 6 6 chr6 72684999 72685159 -109730083 - MER8 DNA MER2_type -79 160 1 369 344 78 25 chr6 72685202 72685562 -109729680 + L1ME4a LINE L1 5592 5970 -151 23 33 0 0 chr6 72685562 72685592 -109729650 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr6 72685686 72685714 -109729528 + AT_rich Low_complexity Low_complexity 1 28 0 243 214 0 0 chr6 72686428 72686498 -109728744 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 24 0 0 0 chr6 72687096 72687120 -109728122 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr6 72687151 72687189 -109728053 + AT_rich Low_complexity Low_complexity 1 38 0 2672 232 82 77 chr6 72687202 72688334 -109726908 - L1MC4 LINE L1 -1147 6895 5758 4467 176 12 14 chr6 72688336 72690395 -109724847 + L1MA4 LINE L1 4094 6294 -6 892 213 80 4 chr6 72690395 72690620 -109724622 - L1MC4 LINE L1 -2036 5749 5508 391 235 25 0 chr6 72690639 72690758 -109724484 - L1MC4 LINE L1 -2289 3857 3736 842 256 56 21 chr6 72690794 72691639 -109723603 + L1M4 LINE L1 2832 3777 -2369 32 0 0 0 chr6 72691945 72691977 -109723265 + AT_rich Low_complexity Low_complexity 1 32 0 12674 221 31 35 chr6 72692012 72692364 -109722878 - L1PB3 LINE L1 -1 6869 6517 369 0 0 0 chr6 72692364 72692405 -109722837 + (TG)n Simple_repeat Simple_repeat 2 42 0 12674 221 31 35 chr6 72692405 72694706 -109720536 - L1PB3 LINE L1 -353 6517 4215 198 71 0 0 chr6 72694706 72694734 -109720508 + (TGG)n Simple_repeat Simple_repeat 1 28 0 12674 221 31 35 chr6 72694734 72696861 -109718381 - L1PB3 LINE L1 -2655 4215 2083 3310 194 15 10 chr6 72696842 72697522 -109717720 - L1PB3 LINE L1 -5521 1342 660 * 2673 315 29 32 chr6 72697491 72699130 -109716112 - L1PBa LINE L1 -5227 1636 3 * 22 80 0 0 chr6 72699580 72699630 -109715612 + AT_rich Low_complexity Low_complexity 1 50 0 210 293 151 9 chr6 72702255 72702361 -109712881 - MIR SINE MIR -14 248 128 236 284 12 0 chr6 72702788 72702869 -109712373 + (TA)n Simple_repeat Simple_repeat 2 83 0 29 0 0 0 chr6 72703292 72703321 -109711921 + AT_rich Low_complexity Low_complexity 1 29 0 264 388 57 29 chr6 72703321 72703656 -109711586 + L2 LINE L2 2707 3044 -228 364 268 127 21 chr6 72704205 72704347 -109710895 - MIR SINE MIR -77 185 29 1716 208 75 10 chr6 72705270 72705669 -109709573 - MSTB LTR MaLR -1 425 1 21 36 0 0 chr6 72706254 72706282 -109708960 + AT_rich Low_complexity Low_complexity 1 28 0 850 357 44 39 chr6 72706525 72707094 -109708148 + MER115 DNA AcHobo 120 691 -2 22 35 0 0 chr6 72707119 72707148 -109708094 + AT_rich Low_complexity Low_complexity 1 29 0 990 370 23 28 chr6 72707733 72708346 -109706896 + L1PA13 LINE L1 788 1397 -6177 440 292 15 22 chr6 72708429 72708630 -109706612 + L1PA13 LINE L1 2077 2306 -5268 4143 124 21 48 chr6 72709077 72709785 -109705457 + LTR8 LTR ERV1 3 691 0 1812 207 15 6 chr6 72709785 72710128 -109705114 + HUERS-P1 LTR ERV1 1 346 -5917 1713 168 8 51 chr6 72710161 72710536 -109704706 + HUERS-P1 LTR ERV1 461 819 -5444 341 275 12 0 chr6 72710538 72710618 -109704624 - LTR28 LTR ERV1 -40 980 900 1317 235 86 104 chr6 72710677 72711459 -109703783 - LTR1B LTR ERV1 -56 964 1 1778 161 20 15 chr6 72711461 72711802 -109703440 - LTR1B-int LTR ERV1 -1 7090 6748 27667 176 21 10 chr6 72711812 72717173 -109698069 - LTR1B-int LTR ERV1 -418 2670 948 2471 57 10 0 chr6 72717186 72717486 -109697756 - AluY SINE Alu -6 305 3 1283 245 96 40 chr6 72717670 72718184 -109697058 - LTR1B-int LTR ERV1 -2518 597 182 555 200 124 176 chr6 72718337 72718867 -109696375 - LTR28 LTR ERV1 0 1020 518 2130 240 16 24 chr6 72718898 72719443 -109695799 + MER87 LTR ERV1 1 541 0 25 0 0 0 chr6 72719498 72719523 -109695719 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr6 72720091 72720133 -109695109 + AT_rich Low_complexity Low_complexity 1 42 0 33 43 0 0 chr6 72720344 72720391 -109694851 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr6 72721527 72721556 -109693686 + AT_rich Low_complexity Low_complexity 1 29 0 3721 203 59 20 chr6 72721789 72723143 -109692099 - L1MA9 LINE L1 -1 6311 4897 4031 193 15 8 chr6 72723152 72724005 -109691237 + Tigger1 DNA MER2_type 24 882 -1536 6216 238 37 19 chr6 72724005 72725922 -109689320 + L1MA3 LINE L1 2242 4193 -1953 5658 147 12 22 chr6 72725927 72727155 -109688087 + L1MA3 LINE L1 5084 6300 -5 1076 181 51 0 chr6 72727159 72727375 -109687867 + Tigger1 DNA MER2_type 869 1095 -1323 5275 160 25 4 chr6 72727375 72728364 -109686878 + Tigger1 DNA MER2_type 1409 2418 0 3984 201 96 6 chr6 72728364 72729496 -109685746 - L1MA9 LINE L1 -1249 4897 3664 279 54 0 0 chr6 72729689 72729726 -109685516 + (CA)n Simple_repeat Simple_repeat 1 37 0 180 271 178 28 chr6 72730007 72730114 -109685128 + L2 LINE L2 3186 3308 -5 281 298 157 31 chr6 72730430 72730632 -109684610 - MIR SINE MIR -10 252 30 2337 285 53 16 chr6 72731104 72731989 -109683253 + L1MCb LINE L1 1 918 -5127 1628 223 88 102 chr6 72732017 72732835 -109682407 - LTR1B LTR ERV1 -13 813 7 1049 228 44 25 chr6 72732906 72733270 -109681972 + L1MCb LINE L1 948 1318 -5246 3384 116 22 2 chr6 72733272 72733765 -109681477 - LTR10B LTR ERV1 0 505 3 8524 252 50 31 chr6 72733771 72736695 -109678547 - HERVI LTR ERV1 -2 7783 4803 3217 252 23 7 chr6 72736687 72737799 -109677443 - HERVI LTR ERV1 -4899 1750 934 * 452 252 9 0 chr6 72738000 72738115 -109677127 - HERVI LTR ERV1 -6773 1012 897 35243 91 14 8 chr6 72738135 72741725 -109673517 + L1PA6 LINE L1 11 3650 -2504 2731 39 0 0 chr6 72741725 72742055 -109673187 + SVA Other Other 1070 1386 0 35243 91 14 8 chr6 72742055 72744575 -109670667 + L1PA6 LINE L1 3650 6154 0 1260 188 22 69 chr6 72744589 72744973 -109670269 - HERVI LTR ERV1 -5815 834 555 861 222 94 7 chr6 72745080 72745334 -109669908 - HERVI LTR ERV1 -6399 250 6 3083 141 26 6 chr6 72745336 72745831 -109669411 - LTR10B LTR ERV1 0 505 1 469 257 57 14 chr6 72745832 72746042 -109669200 + L1MCb LINE L1 1315 1533 -5031 22 35 0 0 chr6 72746082 72746111 -109669131 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 72746484 72746505 -109668737 + AT_rich Low_complexity Low_complexity 1 21 0 483 284 64 62 chr6 72747912 72748363 -109666879 + L1MCb LINE L1 2021 2472 -4273 419 273 7 35 chr6 72748439 72748586 -109666656 - MIR SINE MIR -62 146 20 993 284 39 27 chr6 72748790 72749428 -109665814 + L1MCb LINE L1 2410 3019 -3545 331 323 50 6 chr6 72749471 72749632 -109665610 + L1MEc LINE L1 83 250 -6146 225 440 21 5 chr6 72751253 72751446 -109663796 + L2 LINE L2 1001 1196 -2118 890 210 6 0 chr6 72751544 72751711 -109663531 - FAM SINE Alu -6 169 2 378 310 155 9 chr6 72752942 72753174 -109662068 - MLT1J1 LTR MaLR 0 446 181 26 74 0 0 chr6 72754042 72754096 -109661146 + AT_rich Low_complexity Low_complexity 1 54 0 234 143 39 0 chr6 72754143 72754220 -109661022 + (TA)n Simple_repeat Simple_repeat 2 81 0 239 254 148 16 chr6 72755026 72755148 -109660094 - HAL1 LINE L1 -2284 223 86 290 355 17 45 chr6 72755892 72756182 -109659060 + Charlie4 DNA MER1_type 1258 1539 -422 22 70 0 0 chr6 72756659 72756702 -109658540 + AT_rich Low_complexity Low_complexity 1 43 0 228 299 183 34 chr6 72756715 72757043 -109658199 + L2 LINE L2 523 899 -2415 31 88 0 0 chr6 72757131 72757211 -109658031 + AT_rich Low_complexity Low_complexity 1 80 0 240 330 0 0 chr6 72757277 72757368 -109657874 + (TA)n Simple_repeat Simple_repeat 1 91 0 719 229 40 35 chr6 72757867 72758068 -109657174 - MER20 DNA MER1_type 0 219 18 1935 142 32 41 chr6 72759871 72760209 -109655033 - MER1B DNA MER1_type 0 337 3 319 274 9 35 chr6 72761133 72761246 -109653996 + L1MD3 LINE L1 7878 7987 -8 983 236 33 111 chr6 72761550 72761973 -109653269 - MLT1B LTR MaLR 0 390 1 30 27 0 0 chr6 72761973 72762010 -109653232 + AT_rich Low_complexity Low_complexity 1 37 0 241 144 72 12 chr6 72762057 72762224 -109653018 + (TA)n Simple_repeat Simple_repeat 2 178 0 291 54 0 0 chr6 72762302 72762339 -109652903 + (CA)n Simple_repeat Simple_repeat 2 38 0 2799 119 141 58 chr6 72762371 72762976 -109652266 + MER4A LTR ERV1 10 664 0 346 282 113 14 chr6 72763384 72763526 -109651716 + MLT1J LTR MaLR 325 480 -31 2187 107 3 0 chr6 72763650 72763950 -109651292 + AluSg SINE Alu 1 301 -9 198 239 0 0 chr6 72764415 72764486 -109650756 + A-rich Low_complexity Low_complexity 1 71 0 478 299 77 51 chr6 72764530 72765021 -109650221 - L1M4 LINE L1 -3515 2631 2128 24 67 0 0 chr6 72765498 72765543 -109649699 + AT_rich Low_complexity Low_complexity 1 45 0 2022 127 0 0 chr6 72765596 72765888 -109649354 + AluSc SINE Alu 1 292 -17 672 271 39 28 chr6 72766553 72766837 -109648405 + L1ME2 LINE L1 5863 6149 -15 1874 238 78 56 chr6 72766890 72767072 -109648170 + L1ME2 LINE L1 5197 5374 -790 2258 102 0 6 chr6 72767072 72767385 -109647857 + AluY SINE Alu 1 311 0 1874 238 78 56 chr6 72767385 72768044 -109647198 + L1ME2 LINE L1 5374 6074 -90 1688 122 0 4 chr6 72768061 72768299 -109646943 + AluSq SINE Alu 58 294 -19 26 0 0 0 chr6 72768331 72768357 -109646885 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 72768379 72768400 -109646842 + AT_rich Low_complexity Low_complexity 1 21 0 4925 171 34 32 chr6 72769299 72770368 -109644874 + MER11C LTR ERVK 1 1071 0 21 57 0 0 chr6 72772669 72772704 -109642538 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 72773088 72773110 -109642132 + AT_rich Low_complexity Low_complexity 1 22 0 3190 117 0 2 chr6 72773118 72773570 -109641672 - MLT2A2 LTR ERVL -2 451 1 521 226 15 30 chr6 72773570 72773703 -109641539 + FLAM_C SINE Alu 3 133 0 246 352 12 28 chr6 72773728 72773975 -109641267 + L1MC5 LINE L1 6991 7233 -728 981 283 41 66 chr6 72774058 72774752 -109640490 + MER52A LTR ERV1 659 1474 -281 395 311 7 7 chr6 72774762 72774910 -109640332 + MER52A LTR ERV1 1608 1755 0 265 275 87 77 chr6 72775083 72775200 -109640042 + L1MC5 LINE L1 7304 7418 -543 1366 219 3 39 chr6 72775200 72775510 -109639732 - AluJo SINE Alu -13 299 1 265 275 87 77 chr6 72775510 72775992 -109639250 + L1MC5 LINE L1 7418 7909 -52 203 0 37 0 chr6 72776764 72776791 -109638451 + (TA)n Simple_repeat Simple_repeat 2 29 0 1845 128 0 65 chr6 72776791 72777097 -109638145 - AluY SINE Alu -25 286 1 22 0 0 0 chr6 72777155 72777177 -109638065 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 72777451 72777472 -109637770 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 72777901 72777931 -109637311 + AT_rich Low_complexity Low_complexity 1 30 0 559 329 66 46 chr6 72778203 72778613 -109636629 + LTR16A LTR ERVL 33 450 0 22 70 0 0 chr6 72778838 72778881 -109636361 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr6 72779016 72779045 -109636197 + AT_rich Low_complexity Low_complexity 1 29 0 1831 178 19 3 chr6 72779050 72779395 -109635847 + MER61C LTR ERV1 1 431 -70 1988 148 33 31 chr6 72779395 72779754 -109635488 - THE1B LTR MaLR 0 364 5 10454 129 9 3 chr6 72779758 72781329 -109633913 - THE1B-int LTR MaLR 0 1580 1 1232 176 63 39 chr6 72781331 72781586 -109633656 - THE1B LTR MaLR -2 362 102 276 212 12 47 chr6 72781592 72781677 -109633565 + MER61C-int LTR ERV1 674 755 -6336 2509 146 5 21 chr6 72781685 72782117 -109633125 + MER61C-int LTR ERV1 417 841 -4376 2976 177 45 21 chr6 72782122 72782477 -109632765 + MER61C-int LTR ERV1 1420 1765 -5610 1779 135 4 4 chr6 72782477 72782751 -109632491 + AluSp SINE Alu 39 312 -1 2976 177 45 21 chr6 72782751 72783120 -109632122 + MER61C-int LTR ERV1 1765 3799 -3576 * 20107 126 24 17 chr6 72783100 72786326 -109628916 + MER61C-int LTR ERV1 1972 5217 0 2338 118 42 76 chr6 72786326 72786678 -109628564 + MER61C LTR ERV1 1 336 -98 2542 40 7 3 chr6 72786678 72786980 -109628262 - AluY SINE Alu -8 303 1 2338 118 42 76 chr6 72786980 72787076 -109628166 + MER61C LTR ERV1 336 434 0 24 53 0 0 chr6 72787076 72787114 -109628128 + AT_rich Low_complexity Low_complexity 1 38 0 458 239 44 0 chr6 72787929 72788042 -109627200 - MLT1G LTR MaLR -16 574 457 205 372 67 12 chr6 72789978 72790142 -109625100 - L2 LINE L2 -988 2326 2154 22 0 0 0 chr6 72790243 72790265 -109624977 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr6 72790347 72790390 -109624852 + AT_rich Low_complexity Low_complexity 1 43 0 180 111 0 0 chr6 72790445 72790472 -109624770 + (TATG)n Simple_repeat Simple_repeat 2 28 0 284 283 81 23 chr6 72790569 72790742 -109624500 - L1ME LINE L1 -300 6098 5916 280 357 77 20 chr6 72791186 72791602 -109623640 - L1ME LINE L1 -1029 5353 4962 396 0 0 0 chr6 72791602 72791646 -109623596 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2007 101 0 4 chr6 72791648 72791925 -109623317 - AluSg SINE Alu -32 278 3 280 357 77 20 chr6 72791925 72792105 -109623137 - L1ME LINE L1 -1420 4962 4720 278 245 0 11 chr6 72792152 72792246 -109622996 + CT-rich Low_complexity Low_complexity 3 95 0 552 213 8 8 chr6 72792987 72793109 -109622133 + MER58B DNA MER1_type 212 333 -8 388 250 74 51 chr6 72793408 72793584 -109621658 + LTR33A LTR ERVL 272 451 -72 355 316 112 12 chr6 72793782 72794032 -109621210 - L1ME LINE L1 -4767 1617 1343 322 248 107 47 chr6 72794310 72794459 -109620783 - L1MD1 LINE L1 -314 5928 5771 244 354 25 13 chr6 72794627 72794785 -109620457 - L1MD1 LINE L1 -625 5541 5382 25 75 0 0 chr6 72795539 72795592 -109619650 + AT_rich Low_complexity Low_complexity 1 53 0 1947 132 3 11 chr6 72795715 72796048 -109619194 + AluSq SINE Alu 2 332 0 1645 185 0 3 chr6 72796913 72797200 -109618042 + AluJb SINE Alu 1 286 -26 1840 250 86 27 chr6 72798203 72799380 -109615862 - L1ME LINE L1 -409 5830 4545 554 248 46 62 chr6 72799365 72799537 -109615705 - L1ME LINE L1 -4093 2303 2130 * 231 36 0 0 chr6 72799537 72799565 -109615677 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1725 178 7 0 chr6 72799568 72799849 -109615393 - AluJb SINE Alu -29 283 1 554 248 46 62 chr6 72799849 72800108 -109615134 - L1ME LINE L1 -4268 2128 1875 292 211 53 0 chr6 72800125 72800220 -109615022 - L1ME LINE L1 -4508 1888 1789 1351 238 34 11 chr6 72802745 72803102 -109612140 - MLT1A1 LTR MaLR 0 365 1 27 81 0 0 chr6 72803236 72803298 -109611944 + AT_rich Low_complexity Low_complexity 1 62 0 704 262 19 30 chr6 72803351 72803614 -109611628 + L1MB8 LINE L1 5918 6177 -1 797 230 192 19 chr6 72803677 72803994 -109611248 - MLT1A2 LTR MaLR -2 372 1 21 0 0 0 chr6 72804135 72804156 -109611086 + AT_rich Low_complexity Low_complexity 1 21 0 426 325 157 0 chr6 72804591 72804788 -109610454 + MIR SINE MIR 35 262 0 269 222 32 16 chr6 72804792 72804855 -109610387 + L3 LINE CR1 1242 1305 -272 24 67 0 0 chr6 72805690 72805735 -109609507 + AT_rich Low_complexity Low_complexity 1 45 0 859 200 50 54 chr6 72805769 72805835 -109609407 - Tigger2 DNA MER2_type 0 2718 2653 2482 66 0 0 chr6 72805835 72806138 -109609104 + AluY SINE Alu 1 303 -8 859 200 50 54 chr6 72806138 72806311 -109608931 - Tigger2 DNA MER2_type -65 2653 2480 734 320 36 16 chr6 72809868 72810121 -109605121 + MIR SINE MIR 5 262 0 704 186 0 0 chr6 72810843 72810967 -109604275 - FLAM_C SINE Alu -19 124 1 21 71 0 0 chr6 72811102 72811144 -109604098 + AT_rich Low_complexity Low_complexity 1 42 0 2142 97 20 0 chr6 72811266 72811565 -109603677 - AluSq SINE Alu -6 307 3 556 250 50 17 chr6 72812078 72812258 -109602984 - MER5A DNA MER1_type -1 188 3 24 0 0 0 chr6 72812341 72812365 -109602877 + AT_rich Low_complexity Low_complexity 1 24 0 219 304 33 43 chr6 72813038 72813130 -109602112 + MIR3 SINE MIR 66 156 -52 1570 227 55 83 chr6 72813568 72814233 -109601009 + MLT1E2 LTR MaLR 1 625 -1 247 122 0 0 chr6 72814282 72814331 -109600911 + LTR66 LTR ERVL 391 439 -171 360 152 0 0 chr6 72814331 72814397 -109600845 + (CA)n Simple_repeat Simple_repeat 2 67 0 2832 166 66 26 chr6 72814398 72814574 -109600668 - MER6A DNA MER2_type -263 602 434 1460 62 57 0 chr6 72814574 72814766 -109600476 - AluYa5 SINE Alu -3 308 106 2832 166 66 26 chr6 72814766 72815111 -109600131 - MER6A DNA MER2_type -431 434 53 183 100 0 0 chr6 72815111 72815141 -109600101 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2832 166 66 26 chr6 72815141 72815196 -109600046 - MER6A DNA MER2_type -812 53 2 186 133 0 0 chr6 72815467 72815497 -109599745 + (TA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr6 72815946 72815970 -109599272 + AT_rich Low_complexity Low_complexity 1 24 0 2187 119 0 10 chr6 72817586 72817898 -109597344 - AluSg SINE Alu -1 309 1 22 35 0 0 chr6 72818459 72818488 -109596754 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr6 72818711 72818755 -109596487 + AT_rich Low_complexity Low_complexity 1 44 0 5256 188 34 23 chr6 72818796 72819708 -109595534 + L1MA3 LINE L1 2875 3775 -3790 15761 75 19 0 chr6 72819708 72822614 -109592628 + L1PA6 LINE L1 3212 6150 -4 5256 188 34 23 chr6 72822614 72823859 -109591383 + L1MA3 LINE L1 3775 5064 -2501 2134 160 11 19 chr6 72823859 72824221 -109591021 - THE1B LTR MaLR 0 364 6 6746 127 5 7 chr6 72824221 72825209 -109590033 - THE1B-int LTR MaLR -74 1506 521 2377 133 6 0 chr6 72825206 72825567 -109589675 - THE1B-int LTR MaLR -1216 364 2 * 1997 165 11 19 chr6 72825571 72825935 -109589307 - THE1B LTR MaLR -3 361 1 5460 186 23 14 chr6 72825938 72827109 -109588133 + L1MA3 LINE L1 5063 6244 -1321 627 134 32 0 chr6 72827114 72827371 -109587871 + (TA)n Simple_repeat Simple_repeat 1 265 0 6119 160 27 3 chr6 72827377 72828813 -109586429 + L1MA3 LINE L1 6247 7719 -5 830 232 54 63 chr6 72829038 72829438 -109585804 - MLT1A1 LTR MaLR -12 353 1 606 296 88 33 chr6 72829536 72830049 -109585193 - L1MEc LINE L1 -1587 4628 4088 1124 161 0 0 chr6 72830082 72830256 -109584986 - AluSg/x SINE Alu -26 286 113 1782 183 107 63 chr6 72830268 72830793 -109584449 + LTR10A LTR ERV1 1 548 -61 759 251 113 104 chr6 72830802 72831483 -109583759 + LTR10A-int LTR ERV1 1 687 -5962 5400 101 10 37 chr6 72831625 72832723 -109582519 + LTR10A-int LTR ERV1 711 1720 -5176 307 259 173 0 chr6 72832725 72832806 -109582436 - LTR8 LTR ERV1 -438 253 159 11717 159 9 17 chr6 72832808 72835978 -109579264 + Harlequin LTR ERV1 1807 6645 -4 1736 171 59 28 chr6 72836113 72836470 -109578772 + LTR10A LTR ERV1 181 548 -61 936 241 114 69 chr6 72836557 72837110 -109578132 - L1MEc LINE L1 -2919 3296 2719 523 280 68 28 chr6 72837182 72837690 -109577552 - L1MEc LINE L1 -3595 2620 2135 1651 169 110 20 chr6 72837997 72838353 -109576889 + MSTD LTR MaLR 9 396 0 504 315 50 33 chr6 72838354 72838595 -109576647 - L1M3c LINE L1 -5896 245 1 225 146 0 73 chr6 72838644 72838699 -109576543 - L1MCa LINE L1 -4370 2056 2006 * 275 216 45 23 chr6 72838653 72838741 -109576501 + L1MC4 LINE L1 6614 6703 -1339 215 283 0 17 chr6 72838741 72838801 -109576441 + (TA)n Simple_repeat Simple_repeat 2 60 0 799 222 12 18 chr6 72840079 72840250 -109574992 + MLT1C LTR MaLR 296 465 -2 564 174 33 0 chr6 72840252 72840373 -109574869 + MLT1C-int LTR MaLR 1 125 -1246 1159 322 20 6 chr6 72840385 72840736 -109574506 + MER74C LTR ERVL 5 360 -100 5130 182 37 17 chr6 72840739 72840994 -109574248 + L1MA4 LINE L1 4196 4444 -1856 207 0 0 0 chr6 72840994 72841017 -109574225 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1579 192 3 31 chr6 72841025 72841343 -109573899 + AluJb SINE Alu 1 309 -3 5130 182 37 17 chr6 72841343 72842366 -109572876 + L1MA4 LINE L1 4450 5529 -771 315 0 0 0 chr6 72842366 72842401 -109572841 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 5130 182 37 17 chr6 72842401 72842965 -109572277 + L1MA4 LINE L1 5529 6080 -220 403 162 9 19 chr6 72842968 72843073 -109572169 + L1MA4 LINE L1 6194 6297 -3 505 269 0 7 chr6 72843074 72843215 -109572027 + MLT1C-int LTR MaLR 129 268 -1103 * 3030 267 30 22 chr6 72843189 72843993 -109571249 + MLT1C-int LTR MaLR 418 1227 -144 206 226 38 28 chr6 72844008 72844114 -109571128 + (TATAA)n Simple_repeat Simple_repeat 5 111 0 1540 146 13 107 chr6 72844342 72844715 -109570527 - MER46B DNA MER2_type -5 231 16 408 269 0 0 chr6 72845094 72845187 -109570055 + MIR SINE MIR 45 137 -125 288 100 0 50 chr6 72845204 72845264 -109569978 - LTR66 LTR ERVL -171 439 383 470 217 6 17 chr6 72845274 72845454 -109569788 + (TA)n Simple_repeat Simple_repeat 1 178 0 244 254 9 9 chr6 72845480 72845594 -109569648 + (TA)n Simple_repeat Simple_repeat 2 115 0 231 298 48 24 chr6 72845594 72845678 -109569564 + MIR SINE MIR 166 251 -11 470 105 12 12 chr6 72845700 72845786 -109569456 - L1MB8 LINE L1 0 6178 6093 555 193 0 0 chr6 72845791 72845910 -109569332 + L1MA9 LINE L1 6193 6311 -1 458 327 121 17 chr6 72846048 72846340 -109568902 + MLT1G1 LTR MaLR 1 364 -231 492 200 20 0 chr6 72846356 72846456 -109568786 + MLT1G1 LTR MaLR 493 594 -1 1180 270 7 14 chr6 72849122 72849407 -109565835 - MER70B LTR ERVL -295 283 1 2841 134 0 31 chr6 72850004 72850082 -109565160 - L1PA15 LINE L1 -54 6111 6032 2145 157 11 11 chr6 72850082 72850457 -109564785 - THE1C LTR MaLR 0 375 1 2841 134 0 31 chr6 72850457 72850854 -109564388 - L1PA15 LINE L1 -133 6032 5651 23 54 0 0 chr6 72850894 72850931 -109564311 + AT_rich Low_complexity Low_complexity 1 37 0 1879 186 23 6 chr6 72851016 72851365 -109563877 + THE1A LTR MaLR 1 355 0 10344 131 6 9 chr6 72851365 72852950 -109562292 + THE1A-int LTR MaLR 1 1580 0 2052 153 11 8 chr6 72852950 72853304 -109561938 + THE1A LTR MaLR 1 355 0 274 330 19 0 chr6 72853317 72853423 -109561819 - MIR SINE MIR -127 135 28 578 269 60 64 chr6 72853537 72853786 -109561456 + MIR SINE MIR 2 249 -13 581 279 12 6 chr6 72853880 72854041 -109561201 - MIR SINE MIR -22 240 79 186 179 0 60 chr6 72854556 72854640 -109560602 + (CATATA)n Simple_repeat Simple_repeat 3 81 0 223 158 18 18 chr6 72854682 72854739 -109560503 + (TA)n Simple_repeat Simple_repeat 1 57 0 2874 207 80 55 chr6 72854741 72855287 -109559955 - L1MC3 LINE L1 -29 7756 7179 1844 135 7 3 chr6 72855287 72855602 -109559640 + AluSx SINE Alu 1 316 0 2874 207 80 55 chr6 72855602 72855870 -109559372 - L1MC3 LINE L1 -606 7179 6919 2213 136 13 11 chr6 72855870 72856244 -109558998 + THE1C LTR MaLR 1 375 0 8125 136 100 40 chr6 72856244 72857734 -109557508 + THE1C-int LTR MaLR 1 1579 -1 2455 126 3 5 chr6 72857735 72858107 -109557135 + THE1C LTR MaLR 1 371 -4 1160 227 16 83 chr6 72858109 72858483 -109556759 - L1MC3 LINE L1 -860 6925 6577 373 273 20 0 chr6 72858658 72858757 -109556485 - L1MCa LINE L1 -2314 4112 4012 1411 228 85 67 chr6 72858759 72859521 -109555721 - L1MCa LINE L1 -3118 3308 2533 1412 240 98 47 chr6 72859610 72860338 -109554904 - L1MCa LINE L1 -3971 2455 1691 381 210 7 116 chr6 72860927 72861065 -109554177 - MLT2B1 LTR ERVL -7 513 391 350 280 32 48 chr6 72861084 72861209 -109554033 - MLT2B2 LTR ERVL -247 268 146 1622 215 66 23 chr6 72861219 72861615 -109553627 - ERVL-B1 LTR ERVL -3927 1837 1425 1734 255 67 13 chr6 72861634 72862233 -109553009 - ERVL-B1 LTR ERVL -5036 639 6 1483 269 8 67 chr6 72862233 72862712 -109552530 - MLT2B1 LTR ERVL -48 472 22 31 0 0 0 chr6 72863161 72863192 -109552050 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 72863409 72863432 -109551810 + AT_rich Low_complexity Low_complexity 1 23 0 1543 239 10 30 chr6 72864026 72864419 -109550823 + MLT1B LTR MaLR 1 385 -5 23 0 0 0 chr6 72864580 72864603 -109550639 + AT_rich Low_complexity Low_complexity 1 23 0 224 239 42 0 chr6 72864924 72864995 -109550247 + (TAAA)n Simple_repeat Simple_repeat 3 76 0 228 331 81 16 chr6 72865002 72865126 -109550116 + L3 LINE CR1 1437 1568 -9 184 186 34 0 chr6 72866537 72866596 -109548646 + CT-rich Low_complexity Low_complexity 2 62 0 315 0 0 0 chr6 72866597 72866632 -109548610 + (CA)n Simple_repeat Simple_repeat 2 36 0 1391 230 31 23 chr6 72867326 72867713 -109547529 - MLT1B LTR MaLR 0 390 1 312 351 32 7 chr6 72868593 72868747 -109546495 - LTR16A1 LTR ERVL 0 457 300 281 250 0 16 chr6 72869260 72869324 -109545918 - MIR3 SINE MIR -49 159 97 1429 196 22 53 chr6 72870756 72871077 -109544165 + AluJo SINE Alu 1 311 -1 1056 97 0 7 chr6 72871382 72871527 -109543715 - AluSg/x SINE Alu -11 299 156 225 0 0 0 chr6 72871527 72871552 -109543690 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2106 108 0 0 chr6 72871555 72871834 -109543408 - AluSc SINE Alu -30 279 1 1230 300 65 43 chr6 72871836 72872192 -109543050 - MER69 DNA AcHobo -1509 1017 637 2225 85 0 41 chr6 72872192 72872508 -109542734 - AluY SINE Alu -8 303 1 1230 300 65 43 chr6 72872508 72872828 -109542414 - MER69 DNA AcHobo -1889 637 326 2035 135 0 10 chr6 72873946 72874258 -109540984 + AluSx SINE Alu 1 309 -3 1728 177 0 10 chr6 72874512 72874812 -109540430 - AluJo SINE Alu -11 301 5 260 365 24 24 chr6 72874905 72875031 -109540211 + MIR SINE MIR 4 129 -133 909 235 67 84 chr6 72875190 72875727 -109539515 + Charlie1 DNA MER1_type 2229 2756 -5 25 65 0 0 chr6 72875960 72876006 -109539236 + AT_rich Low_complexity Low_complexity 1 46 0 379 247 120 43 chr6 72876166 72876279 -109538963 - L1MDa LINE L1 -2851 3689 3586 1659 140 31 71 chr6 72876279 72876601 -109538641 - AluSx SINE Alu -3 309 1 379 247 120 43 chr6 72876601 72876787 -109538455 - L1MDa LINE L1 -2954 3586 3367 2609 17 0 0 chr6 72876789 72877104 -109538138 - AluYb8 SINE Alu 0 315 1 2062 148 38 3 chr6 72877128 72877472 -109537770 - MER46B DNA MER2_type 0 236 6 1716 279 46 35 chr6 72877476 72877925 -109537317 - L1MDa LINE L1 -3261 3279 2817 1947 141 10 7 chr6 72877925 72878223 -109537019 - AluSx SINE Alu -13 299 1 1716 279 46 35 chr6 72878223 72878541 -109536701 - L1MDa LINE L1 -3723 2817 2504 748 240 67 8 chr6 72878555 72878809 -109536433 - L1MDa LINE L1 -4126 2414 2146 1060 99 26 0 chr6 72878809 72878960 -109536282 + AluSg/x SINE Alu 155 309 0 3422 284 58 45 chr6 72879016 72880917 -109534325 - L1MDa LINE L1 -4462 2078 69 35 41 0 0 chr6 72882026 72882075 -109533167 + AT_rich Low_complexity Low_complexity 1 49 0 23 92 0 0 chr6 72882951 72883016 -109532226 + AT_rich Low_complexity Low_complexity 1 65 0 1720 285 100 34 chr6 72883953 72885141 -109530101 + L1M4 LINE L1 3292 4558 -1588 271 276 41 0 chr6 72885183 72885306 -109529936 + L1M4 LINE L1 4925 5052 -1094 189 0 0 0 chr6 72885408 72885429 -109529813 + (TG)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chr6 72886154 72886179 -109529063 + AT_rich Low_complexity Low_complexity 1 25 0 2298 79 3 0 chr6 72886197 72886488 -109528754 - AluY SINE Alu -19 292 1 203 103 26 0 chr6 72887056 72887095 -109528147 + (TG)n Simple_repeat Simple_repeat 1 40 0 35 0 0 0 chr6 72887140 72887175 -109528067 + AT_rich Low_complexity Low_complexity 1 35 0 282 222 0 28 chr6 72888280 72888306 -109526936 + CT-rich Low_complexity Low_complexity 3 28 -44 1850 198 40 26 chr6 72888306 72888726 -109526516 + MSTB LTR MaLR 1 426 0 282 222 0 28 chr6 72888726 72888771 -109526471 + CT-rich Low_complexity Low_complexity 28 72 0 211 189 0 0 chr6 72889673 72889710 -109525532 + (CA)n Simple_repeat Simple_repeat 2 38 0 188 341 44 11 chr6 72890302 72890393 -109524849 + MIR SINE MIR 49 142 -66 2257 99 0 10 chr6 72890492 72890805 -109524437 - AluSg SINE Alu 0 310 1 241 279 87 58 chr6 72893536 72893744 -109521498 - MIR SINE MIR -47 215 2 1623 168 30 10 chr6 72894904 72895201 -109520041 - AluJo SINE Alu -9 303 1 21 0 0 0 chr6 72895236 72895257 -109519985 + AT_rich Low_complexity Low_complexity 1 21 0 1270 216 76 0 chr6 72895369 72895633 -109519609 - AluJo SINE Alu -18 294 11 267 314 46 39 chr6 72897591 72897744 -109517498 + L2 LINE L2 3159 3312 -1 1976 147 3 0 chr6 72898313 72898612 -109516630 + AluSq SINE Alu 1 300 -13 337 253 66 0 chr6 72898696 72898787 -109516455 + MER94 DNA DNA 17 113 -21 458 301 107 58 chr6 72899294 72899706 -109515536 - LTR33A LTR ERVL -89 434 3 2251 113 0 0 chr6 72900632 72900934 -109514308 + AluSc SINE Alu 2 303 -6 607 97 0 0 chr6 72901115 72901208 -109514034 + L1MA6 LINE L1 6208 6300 0 1460 279 67 36 chr6 72901453 72902287 -109512955 - L1ME2 LINE L1 -23 6141 5282 2361 118 46 29 chr6 72902303 72902720 -109512522 - L1PA13 LINE L1 -3 6160 5737 1354 66 0 0 chr6 72902720 72902901 -109512341 - HERVK9 LTR ERVK -5735 181 1 3300 98 44 24 chr6 72902901 72903402 -109511840 - MER9 LTR ERVK 0 511 1 1460 283 74 33 chr6 72903414 72904480 -109510762 - L1ME2 LINE L1 -869 5277 4168 1865 266 61 34 chr6 72905011 72905308 -109509934 + L1ME1 LINE L1 5409 5696 -470 2573 62 0 0 chr6 72905308 72905617 -109509625 - AluY SINE Alu -2 309 1 1865 266 61 34 chr6 72905617 72906057 -109509185 + L1ME1 LINE L1 5696 6166 0 21 57 0 0 chr6 72906434 72906469 -109508773 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr6 72906902 72906930 -109508312 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr6 72907014 72907053 -109508189 + AT_rich Low_complexity Low_complexity 1 39 0 850 220 40 148 chr6 72908916 72909139 -109506103 - MLT1A2 LTR MaLR -4 370 181 554 273 23 17 chr6 72909170 72909181 -109506061 - MLT1A2 LTR MaLR -201 173 164 2335 102 0 6 chr6 72909181 72909496 -109505746 - AluSp SINE Alu 0 313 1 554 273 23 17 chr6 72909496 72909656 -109505586 - MLT1A2 LTR MaLR -210 164 1 21 0 0 0 chr6 72910313 72910334 -109504908 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr6 72910479 72910503 -109504739 + (A)n Simple_repeat Simple_repeat 1 24 0 205 354 0 0 chr6 72910580 72910645 -109504597 + L2 LINE L2 3207 3271 -1 1580 231 27 35 chr6 72911206 72911695 -109503547 - MER31A LTR ERV1 0 485 1 211 185 0 37 chr6 72911967 72912021 -109503221 + T-rich Low_complexity Low_complexity 1 52 0 866 319 149 0 chr6 72913114 72913496 -109501746 - L2 LINE L2 -507 2807 2369 242 244 67 56 chr6 72913547 72913637 -109501605 - L2 LINE L2 -941 2373 2283 2027 71 8 0 chr6 72913756 72914009 -109501233 + AluY SINE Alu 45 299 -12 2146 125 0 0 chr6 72914740 72915036 -109500206 + AluSg SINE Alu 1 296 -14 1345 299 93 34 chr6 72915212 72915918 -109499324 - L2 LINE L2 -1039 2275 1528 473 272 8 32 chr6 72916012 72916137 -109499105 - L2 LINE L2 0 3313 3192 211 319 191 11 chr6 72917015 72917109 -109498133 + MER5A DNA MER1_type 76 186 -3 876 200 28 42 chr6 72917284 72917499 -109497743 + MER20 DNA MER1_type 7 218 -1 186 364 47 23 chr6 72918530 72918659 -109496583 - L2 LINE L2 0 3313 3182 1688 231 25 50 chr6 72919380 72920198 -109495044 + Charlie1 DNA MER1_type 1905 2761 0 1941 131 0 4 chr6 72920453 72920728 -109494514 + AluY SINE Alu 3 276 -35 387 0 0 0 chr6 72920736 72920779 -109494463 + (CA)n Simple_repeat Simple_repeat 2 44 0 956 333 80 55 chr6 72920797 72921280 -109493962 + HERVL LTR ERVL 3541 4010 -1754 2031 154 0 0 chr6 72921280 72921579 -109493663 - AluSx SINE Alu -13 299 1 956 333 80 55 chr6 72921579 72922133 -109493109 + HERVL LTR ERVL 4010 4674 -1090 1341 147 17 22 chr6 72922160 72922392 -109492850 - THE1C LTR MaLR 0 375 145 480 236 154 18 chr6 72923275 72923495 -109491747 + MER5C DNA MER1_type 75 324 0 22 0 0 0 chr6 72924840 72924862 -109490380 + AT_rich Low_complexity Low_complexity 1 22 0 1855 125 50 4 chr6 72925085 72925366 -109489876 - AluSx SINE Alu -18 294 1 1723 46 29 25 chr6 72926931 72927171 -109488071 + L1PA4 LINE L1 5914 6154 -1 614 307 133 32 chr6 72927543 72928015 -109487227 + L2 LINE L2 2773 3291 -22 2489 78 0 0 chr6 72928305 72928612 -109486630 - AluY SINE Alu -4 307 1 1856 144 188 6 chr6 72930386 72930748 -109484494 - MSTA LTR MaLR 0 428 1 206 265 157 60 chr6 72930816 72930982 -109484260 - MIR SINE MIR -32 230 49 213 121 0 0 chr6 72931046 72931079 -109484163 + (TG)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr6 72931091 72931120 -109484122 + (CA)n Simple_repeat Simple_repeat 2 30 0 718 134 0 9 chr6 72931128 72931240 -109484002 + MER9 LTR ERVK 401 511 0 261 0 0 0 chr6 72931342 72931371 -109483871 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr6 72931412 72931440 -109483802 + AT_rich Low_complexity Low_complexity 1 28 0 522 345 10 5 chr6 72931858 72932067 -109483175 + MER63A DNA MER1_type 1 210 0 3597 103 2 6 chr6 72932314 72932826 -109482416 + MER9 LTR ERVK 2 511 0 633 173 28 84 chr6 72933106 72933285 -109481957 - MLT1A2 LTR MaLR -49 325 157 1981 49 4 0 chr6 72933289 72933535 -109481707 - L1PA4 LINE L1 0 6155 5909 6574 190 165 28 chr6 72933545 72935050 -109480192 - MER52A LTR ERV1 -43 1712 1 1862 201 29 11 chr6 72935050 72935427 -109479815 - MER7C DNA MER2_type -218 384 1 34 55 0 0 chr6 72935427 72935482 -109479760 + AT_rich Low_complexity Low_complexity 1 55 0 2554 45 0 0 chr6 72935663 72935954 -109479288 - AluY SINE Alu -8 303 13 23 0 0 0 chr6 72936924 72936947 -109478295 + AT_rich Low_complexity Low_complexity 1 23 0 3701 255 46 18 chr6 72937058 72938353 -109476889 + L1M4 LINE L1 3743 5080 -1066 8851 38 5 0 chr6 72938353 72940196 -109475046 + L1PA4 LINE L1 4309 6155 0 3701 255 46 18 chr6 72940196 72940272 -109474970 + L1M4 LINE L1 5080 5152 -994 47 0 0 0 chr6 72940292 72940339 -109474903 + AT_rich Low_complexity Low_complexity 1 47 0 3262 133 0 6 chr6 72940339 72940811 -109474431 - LTR9 LTR ERV1 -143 469 1 14586 214 49 21 chr6 72940811 72945512 -109469730 - L1PA12 LINE L1 -1682 5902 7 262 327 96 29 chr6 72946415 72946519 -109468723 - L2 LINE L2 -37 3235 3125 489 329 228 15 chr6 72946737 72947287 -109467955 + L2 LINE L2 2386 3050 -263 26 0 0 0 chr6 72947370 72947396 -109467846 + AT_rich Low_complexity Low_complexity 1 26 0 376 223 11 0 chr6 72947437 72947531 -109467711 - MER53 DNA DNA -94 95 1 219 284 12 62 chr6 72947594 72947675 -109467567 + L2 LINE L2 3227 3303 -10 336 48 0 0 chr6 72947692 72947734 -109467508 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr6 72948053 72948074 -109467168 + AT_rich Low_complexity Low_complexity 1 21 0 257 170 60 10 chr6 72948360 72948460 -109466782 + (TA)n Simple_repeat Simple_repeat 2 106 0 244 160 38 19 chr6 72948475 72948581 -109466661 + (TATAA)n Simple_repeat Simple_repeat 5 112 0 252 160 73 27 chr6 72948590 72948740 -109466502 + (TA)n Simple_repeat Simple_repeat 2 158 0 22 0 0 0 chr6 72948756 72948778 -109466464 + AT_rich Low_complexity Low_complexity 1 22 0 14137 136 74 13 chr6 72948871 72951875 -109463367 + L1PBa LINE L1 3 3165 -3697 5113 246 33 22 chr6 72951871 72953910 -109461332 - L1 LINE L1 -2550 4298 2152 * 2485 181 24 12 chr6 72954106 72955081 -109460161 + L1PBb LINE L1 549 1536 -4668 248 100 0 0 chr6 72955084 72955124 -109460118 - L1PBa LINE L1 -6774 89 50 24 0 0 0 chr6 72956350 72956374 -109458868 + AT_rich Low_complexity Low_complexity 1 24 0 40 37 0 0 chr6 72956453 72956507 -109458735 + AT_rich Low_complexity Low_complexity 1 54 0 22 88 0 0 chr6 72956805 72956862 -109458380 + AT_rich Low_complexity Low_complexity 1 57 0 27 73 0 0 chr6 72957033 72957088 -109458154 + AT_rich Low_complexity Low_complexity 1 55 0 305 256 78 73 chr6 72957389 72957608 -109457634 - HAL1 LINE L1 -1446 1061 842 327 273 52 29 chr6 72957783 72957955 -109457287 - L1MEd LINE L1 -3567 2562 2387 361 324 39 19 chr6 72958223 72958584 -109456658 - L1MEd LINE L1 -3632 2497 2130 260 185 31 0 chr6 72958721 72958786 -109456456 + (TA)n Simple_repeat Simple_repeat 2 68 0 607 239 47 26 chr6 72958928 72959124 -109456118 + MER63A DNA MER1_type 10 209 -1 321 68 0 0 chr6 72959406 72959450 -109455792 + (CA)n Simple_repeat Simple_repeat 1 44 0 253 336 102 47 chr6 72959628 72960101 -109455141 - L1MEd LINE L1 -5369 750 252 180 0 0 0 chr6 72960661 72960681 -109454561 + (TG)n Simple_repeat Simple_repeat 2 21 0 326 235 0 25 chr6 72960681 72960800 -109454442 + (CATA)n Simple_repeat Simple_repeat 2 117 0 802 156 0 0 chr6 72961055 72961183 -109454059 - FLAM_C SINE Alu -4 129 2 32 0 0 0 chr6 72961378 72961410 -109453832 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 72961451 72961472 -109453770 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 72961841 72961863 -109453379 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 72961931 72961968 -109453274 + AT_rich Low_complexity Low_complexity 1 37 0 31 76 0 0 chr6 72962122 72962188 -109453054 + AT_rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr6 72962365 72962398 -109452844 + AT_rich Low_complexity Low_complexity 1 33 0 301 268 68 50 chr6 72962802 72963022 -109452220 - L1ME LINE L1 -561 5603 5380 305 193 71 22 chr6 72963085 72963403 -109451839 + (TA)n Simple_repeat Simple_repeat 1 333 0 21 0 0 0 chr6 72963635 72963656 -109451586 + AT_rich Low_complexity Low_complexity 1 21 0 321 351 45 29 chr6 72963716 72963958 -109451284 - L1ME LINE L1 -2273 3873 3628 1151 225 66 39 chr6 72964060 72964424 -109450818 + MLT1A2 LTR MaLR 1 374 0 7026 116 43 10 chr6 72965051 72966115 -109449127 - THE1A-int LTR MaLR -481 1099 1 2193 130 11 8 chr6 72966115 72966469 -109448773 - THE1A LTR MaLR 0 355 1 5576 126 7 2 chr6 72966469 72967290 -109447952 + MER52-int LTR ERV1 6263 7087 -4 1144 201 43 124 chr6 72967296 72968041 -109447201 + MER52A LTR ERV1 531 716 -304 * 1840 242 84 42 chr6 72968017 72968541 -109446701 + MER52A LTR ERV1 1209 1754 -1 536 144 21 0 chr6 72968548 72968645 -109446597 + L1MA10 LINE L1 6234 6332 -2 303 268 65 14 chr6 72968646 72968784 -109446458 + L1MC4a LINE L1 5815 5959 -1849 22 70 0 0 chr6 72968800 72968843 -109446399 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr6 72969006 72969042 -109446200 + AT_rich Low_complexity Low_complexity 1 36 0 248 222 101 10 chr6 72969285 72969384 -109445858 - MER53 DNA DNA -3 186 79 189 290 32 32 chr6 72970442 72970504 -109444738 + L2 LINE L2 3245 3306 -7 226 0 0 56 chr6 72970690 72970726 -109444516 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1712 164 42 0 chr6 72970728 72970991 -109444251 - AluSx SINE Alu -34 278 5 642 73 0 21 chr6 72971958 72972054 -109443188 + L1PB3 LINE L1 6060 6153 -1 1527 209 39 34 chr6 72974377 72974830 -109440412 - L1MB7 LINE L1 -1 6183 5735 * 2217 227 66 82 chr6 72974825 72975645 -109439597 - L1M4 LINE L1 -5349 1193 387 511 276 15 0 chr6 72975662 72975796 -109439446 - L1M4 LINE L1 -6393 149 14 353 178 0 14 chr6 72975819 72975892 -109439350 + MER31A LTR ERV1 6 77 -408 2753 238 34 6 chr6 72975899 72976410 -109438832 - L1 LINE L1 -3171 3677 3139 288 77 0 0 chr6 72976410 72976449 -109438793 + (TA)n Simple_repeat Simple_repeat 2 40 0 2753 238 34 6 chr6 72976449 72976651 -109438591 - L1 LINE L1 -3709 3139 2944 4155 200 15 8 chr6 72976651 72977497 -109437745 - Tigger1 DNA MER2_type -1536 882 31 22 42 0 0 chr6 72977766 72977790 -109437452 + AT_rich Low_complexity Low_complexity 1 24 0 244 354 25 13 chr6 72978544 72978702 -109436540 + L1MD1 LINE L1 5382 5541 -625 322 248 107 47 chr6 72978870 72979019 -109436223 + L1MD1 LINE L1 5771 5928 -314 368 312 112 12 chr6 72979297 72979547 -109435695 + L1ME LINE L1 1343 1617 -4767 391 261 62 40 chr6 72979745 72979921 -109435321 - LTR33A LTR ERVL -72 451 272 552 213 8 8 chr6 72980220 72980342 -109434900 - MER58B DNA MER1_type -8 333 212 266 245 0 11 chr6 72981084 72981178 -109434064 + GA-rich Low_complexity Low_complexity 3 95 0 391 337 45 51 chr6 72981240 72981406 -109433836 + L1ME LINE L1 4738 4903 -1479 1882 116 4 4 chr6 72981406 72981682 -109433560 + AluSg SINE Alu 3 278 -32 288 0 0 0 chr6 72981684 72981716 -109433526 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 391 337 45 51 chr6 72981716 72981881 -109433361 + L1ME LINE L1 4904 5070 -1312 269 349 29 10 chr6 72981923 72982132 -109433110 + L1ME LINE L1 5141 5353 -1029 227 291 79 24 chr6 72982576 72982741 -109432501 + L1ME LINE L1 5916 6089 -309 222 255 0 0 chr6 72982864 72982915 -109432327 + G-rich Low_complexity Low_complexity 1 51 0 390 316 90 58 chr6 72982915 72983327 -109431915 - L1 LINE L1 -5927 922 498 2955 179 40 37 chr6 73033479 73034548 -109380694 + MER52A LTR ERV1 365 1506 -249 219 274 39 78 chr6 73035369 73035471 -109379771 - L2 LINE L2 -1 3271 3174 268 308 75 44 chr6 73035485 73035644 -109379598 + MER5A DNA MER1_type 1 164 -25 685 294 23 14 chr6 73035782 73036000 -109379242 - MIR SINE MIR 0 262 43 292 209 44 44 chr6 73036000 73036091 -109379151 - L1MEc LINE L1 -4473 2134 2044 712 112 52 0 chr6 73037665 73037781 -109377461 - THE1C LTR MaLR 0 375 254 1195 197 27 8 chr6 73037892 73038151 -109377091 - L1 LINE L1 -1076 5070 4807 1014 234 25 56 chr6 73038149 73038345 -109376897 - L1M4 LINE L1 -1135 5011 4829 * 1535 181 0 0 chr6 73038345 73038588 -109376654 - AluSx SINE Alu -69 243 1 1014 234 25 56 chr6 73038588 73038750 -109376492 - L1M4 LINE L1 -1317 4829 4664 22 70 0 0 chr6 73038932 73038975 -109376267 + AT_rich Low_complexity Low_complexity 1 43 0 34 55 0 0 chr6 73040183 73040238 -109375004 + AT_rich Low_complexity Low_complexity 1 55 0 487 187 0 0 chr6 73040442 73040533 -109374709 + L1MA10 LINE L1 6213 6303 -31 642 73 0 21 chr6 73043473 73043569 -109371673 + L1PB3 LINE L1 6060 6153 -1 311 322 17 9 chr6 73044400 73044515 -109370727 - L1MEc LINE L1 -4792 1634 1519 369 0 0 0 chr6 73044624 73044665 -109370577 + (CA)n Simple_repeat Simple_repeat 1 41 0 1283 249 108 38 chr6 73045735 73046001 -109369241 + MLT1D LTR MaLR 1 247 -258 2271 176 21 9 chr6 73046001 73046422 -109368820 + MSTB LTR MaLR 1 426 0 1283 249 108 38 chr6 73046422 73046625 -109368617 + MLT1D LTR MaLR 247 503 -2 292 325 98 24 chr6 73046926 73047212 -109368030 - MLT2F LTR ERVL -5 658 157 459 299 58 7 chr6 73047269 73047423 -109367819 - MLT2E LTR ERVL -464 164 3 8723 153 12 15 chr6 73047702 73048099 -109367143 + Tigger1 DNA MER2_type 960 1357 -1061 203 61 30 0 chr6 73048099 73048132 -109367110 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 8723 153 12 15 chr6 73048132 73049198 -109366044 + Tigger1 DNA MER2_type 1357 2418 0 1230 71 13 0 chr6 73049518 73049673 -109365569 - AluY SINE Alu -154 157 1 1020 260 92 23 chr6 73049679 73050113 -109365129 + L1ME1 LINE L1 5703 6166 0 21 57 0 0 chr6 73050495 73050530 -109364712 + AT_rich Low_complexity Low_complexity 1 35 0 810 232 86 67 chr6 73050947 73051406 -109363836 - LTR24B LTR ERV1 -115 461 1 21 71 0 0 chr6 73051453 73051495 -109363747 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr6 73051564 73051606 -109363636 + AT_rich Low_complexity Low_complexity 1 42 0 970 226 53 5 chr6 73052705 73052913 -109362329 - MER2 DNA MER2_type -1 344 127 238 293 12 12 chr6 73053048 73053130 -109362112 + Charlie8 DNA MER1_type 85 166 -2251 1386 202 20 27 chr6 73053674 73053971 -109361271 - AluJo SINE Alu -16 296 2 22 0 0 0 chr6 73054593 73054615 -109360627 + AT_rich Low_complexity Low_complexity 1 22 0 1426 155 11 23 chr6 73054973 73055237 -109360005 + THE1C LTR MaLR 115 375 0 825 263 23 8 chr6 73055922 73056184 -109359058 + LTR37B LTR ERV1 6 271 -197 238 156 44 0 chr6 73056247 73056292 -109358950 - MER58 DNA MER1_type -1 2419 2373 1302 199 56 7 chr6 73056304 73056606 -109358636 - L1MA9 LINE L1 -214 6098 5782 30 89 0 0 chr6 73056628 73056707 -109358535 + AT_rich Low_complexity Low_complexity 1 79 0 1664 164 40 9 chr6 73056784 73057108 -109358134 + L1P LINE L1 1902 2235 -3911 246 136 0 0 chr6 73057762 73057806 -109357436 + (GGA)n Simple_repeat Simple_repeat 3 46 0 1355 234 12 35 chr6 73057878 73058262 -109356980 - L1MA9 LINE L1 -127 6176 5783 216 60 0 60 chr6 73058270 73058320 -109356922 + (TA)n Simple_repeat Simple_repeat 2 48 0 3992 167 21 10 chr6 73058328 73059029 -109356213 + MSTA-int LTR MaLR 872 1580 0 2169 158 46 24 chr6 73059031 73059448 -109355794 + MSTA LTR MaLR 3 428 0 1851 150 27 6 chr6 73059448 73059782 -109355460 - L1MA9 LINE L1 -542 5749 5409 533 354 111 9 chr6 73060575 73060891 -109354351 + L2 LINE L2 2417 2764 -550 1303 167 8 8 chr6 73060915 73061155 -109354087 - THE1C LTR MaLR 0 375 136 21 95 0 0 chr6 73061682 73061745 -109353497 + AT_rich Low_complexity Low_complexity 1 63 0 1099 259 33 9 chr6 73062844 73063180 -109352062 - L1ME2 LINE L1 -65 6099 5756 335 257 0 0 chr6 73063281 73063351 -109351891 - MER52A LTR ERV1 -1026 729 660 5467 130 7 4 chr6 73063357 73064179 -109351063 - MER52-int LTR ERV1 -4 7087 6263 2193 130 11 8 chr6 73064179 73064533 -109350709 + THE1A LTR MaLR 1 355 0 7044 115 43 10 chr6 73064533 73065597 -109349645 + THE1A-int LTR MaLR 1 1099 -481 1151 225 66 39 chr6 73066224 73066588 -109348654 - MLT1A2 LTR MaLR 0 374 1 261 393 9 27 chr6 73066948 73067060 -109348182 + L2 LINE L2 3163 3272 0 915 177 44 0 chr6 73067859 73068062 -109347180 + L1MA8 LINE L1 6078 6289 -2 22 0 0 0 chr6 73069014 73069036 -109346206 + AT_rich Low_complexity Low_complexity 1 22 0 212 384 67 9 chr6 73070105 73070329 -109344913 + L2 LINE L2 2378 2614 -700 281 371 26 0 chr6 73070357 73070473 -109344769 + L2 LINE L2 2743 2861 -453 5318 194 26 38 chr6 73070828 73071244 -109343998 + L1M2 LINE L1 4060 4479 -1723 1897 133 0 4 chr6 73071244 73071523 -109343719 + AluSq SINE Alu 1 278 -35 5318 194 26 38 chr6 73071523 73072525 -109342717 + L1M2 LINE L1 4479 5459 -743 483 226 0 0 chr6 73072626 73072732 -109342510 + MER52A LTR ERV1 1607 1712 -43 1970 49 4 0 chr6 73072742 73072988 -109342254 + L1PA4 LINE L1 5909 6155 0 622 174 28 82 chr6 73072992 73073174 -109342068 + MLT1B LTR MaLR 157 344 -46 3487 111 2 6 chr6 73073451 73073963 -109341279 - MER9 LTR ERVK 0 511 2 518 345 10 5 chr6 73074210 73074419 -109340823 - MER63A DNA MER1_type 0 210 1 21 36 0 0 chr6 73074837 73074865 -109340377 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr6 73074906 73074939 -109340303 + (CA)n Simple_repeat Simple_repeat 2 34 0 709 134 0 9 chr6 73075039 73075151 -109340091 - MER9 LTR ERVK 0 511 401 279 0 0 0 chr6 73075159 73075190 -109340052 + (TG)n Simple_repeat Simple_repeat 2 32 0 204 125 0 0 chr6 73075202 73075234 -109340008 + (CA)n Simple_repeat Simple_repeat 2 33 0 247 267 80 0 chr6 73075364 73075439 -109339803 - MER94 DNA DNA -37 97 17 1976 147 3 0 chr6 73075524 73075823 -109339419 - AluSq SINE Alu -13 300 1 267 314 46 39 chr6 73076392 73076545 -109338697 - L2 LINE L2 -1 3312 3159 1270 216 76 0 chr6 73078503 73078767 -109336475 + AluJo SINE Alu 11 294 -18 21 0 0 0 chr6 73078879 73078900 -109336342 + AT_rich Low_complexity Low_complexity 1 21 0 1601 172 30 10 chr6 73078935 73079232 -109336010 + AluJo SINE Alu 1 303 -9 2424 184 4 31 chr6 73079701 73080191 -109335051 + L1P LINE L1 3988 4464 -1682 3272 131 0 6 chr6 73080191 73080663 -109334579 + LTR9 LTR ERV1 1 469 -143 47 0 0 0 chr6 73080663 73080710 -109334532 + AT_rich Low_complexity Low_complexity 1 47 0 3791 257 47 18 chr6 73080730 73080806 -109334436 - L1M4 LINE L1 -994 5152 5080 8823 39 0 0 chr6 73080806 73082650 -109332592 - L1PA4 LINE L1 0 6155 4309 3791 257 47 18 chr6 73082650 73083943 -109331299 - L1M4 LINE L1 -1066 5080 3743 23 0 0 0 chr6 73084054 73084077 -109331165 + AT_rich Low_complexity Low_complexity 1 23 0 421 317 42 12 chr6 73085603 73085770 -109329472 - MIR SINE MIR -71 191 20 35 83 0 0 chr6 73085939 73086023 -109329219 + AT_rich Low_complexity Low_complexity 1 84 0 755 255 78 0 chr6 73087653 73087845 -109327397 - MER58A DNA MER1_type -17 207 1 3835 201 28 4 chr6 73089184 73089894 -109325348 + MER44D DNA MER2_type 2 600 -5 255 229 0 0 chr6 73089968 73090029 -109325213 + (TATG)n Simple_repeat Simple_repeat 4 64 0 706 173 7 0 chr6 73090704 73090843 -109324399 - L1MB4 LINE L1 -1 6179 6040 699 85 47 0 chr6 73090992 73091098 -109324144 - L1MA5A LINE L1 -26 6271 6161 189 243 0 27 chr6 73091311 73091348 -109323894 - L2 LINE L2 -36 3236 3201 181 324 42 0 chr6 73092574 73092645 -109322597 + MIR3 SINE MIR 132 205 -3 236 315 0 0 chr6 73092840 73092929 -109322313 + L1MC4 LINE L1 6614 6702 -1340 * 270 250 71 0 chr6 73092854 73092938 -109322304 - L1MC4 LINE L1 -1339 6703 6614 248 200 17 0 chr6 73092941 73093001 -109322241 + (TA)n Simple_repeat Simple_repeat 2 62 0 2783 260 45 27 chr6 73093103 73094305 -109320937 - L1M4 LINE L1 -2230 3916 2693 1958 241 46 105 chr6 73094309 73094591 -109320651 - L1MCb LINE L1 -5075 970 673 1968 149 0 0 chr6 73094591 73094892 -109320350 - AluSx SINE Alu -7 305 5 1958 241 46 105 chr6 73094892 73095632 -109319610 - L1MCb LINE L1 -5372 673 8 448 360 12 0 chr6 73095836 73096000 -109319242 + MIR3 SINE MIR 41 206 -2 1960 104 0 60 chr6 73096230 73096574 -109318668 - AluSg SINE Alu 0 326 1 1427 211 74 66 chr6 73096578 73097099 -109318143 - L1MA7 LINE L1 0 6291 5776 212 208 0 21 chr6 73097107 73097155 -109318087 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 1558 174 28 0 chr6 73097210 73097492 -109317750 - L1MA7 LINE L1 -503 5788 5499 30301 116 17 30 chr6 73097594 73103505 -109311737 + L1PA7 LINE L1 327 6145 -9 339 130 0 0 chr6 73103505 73103559 -109311683 + (TA)n Simple_repeat Simple_repeat 1 54 0 615 243 41 55 chr6 73103969 73104187 -109311055 - MER20 DNA MER1_type -4 215 1 29 28 0 0 chr6 73104824 73104860 -109310382 + AT_rich Low_complexity Low_complexity 1 36 0 390 306 47 35 chr6 73104973 73105143 -109310099 + MER5B DNA MER1_type 4 175 -3 901 236 56 58 chr6 73105153 73105443 -109309799 + Charlie1b DNA MER1_type 8 298 -2463 2008 120 0 19 chr6 73105443 73105616 -109309626 - AluSg SINE Alu -8 302 136 2433 54 0 7 chr6 73105616 73105914 -109309328 - AluY SINE Alu -15 296 1 2008 120 0 19 chr6 73105914 73106048 -109309194 - AluSg SINE Alu -174 136 1 901 236 56 58 chr6 73106048 73106134 -109309108 + Charlie1b DNA MER1_type 298 383 -140 22 0 0 0 chr6 73107098 73107120 -109308122 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr6 73108283 73108308 -109306934 + AT_rich Low_complexity Low_complexity 1 25 0 1470 198 27 16 chr6 73108559 73108877 -109306365 - MLT1A1 LTR MaLR 0 396 42 23 68 0 0 chr6 73108936 73108980 -109306262 + AT_rich Low_complexity Low_complexity 1 44 0 247 243 0 43 chr6 73109411 73109481 -109305761 + CT-rich Low_complexity Low_complexity 3 69 0 181 298 18 18 chr6 73109525 73109582 -109305660 + L2 LINE L2 3009 3065 -248 820 231 22 4 chr6 73110234 73110459 -109304783 + L1 LINE L1 4256 4484 -1662 1432 122 45 5 chr6 73111288 73111509 -109303733 - MER30 DNA MER1_type 0 230 1 382 297 31 27 chr6 73111514 73111736 -109303506 + L1MCa LINE L1 932 1154 -5272 194 206 118 0 chr6 73111746 73111814 -109303428 + L3 LINE CR1 292 367 -1210 1140 181 0 5 chr6 73112074 73112273 -109302969 + L1PA15 LINE L1 5961 6158 -7 33 56 0 0 chr6 73112305 73112359 -109302883 + AT_rich Low_complexity Low_complexity 1 54 0 3080 144 76 0 chr6 73112608 73113123 -109302119 - MER41C LTR ERV1 0 554 1 298 323 24 73 chr6 73113724 73113888 -109301354 + MER5B DNA MER1_type 4 159 -19 315 332 31 19 chr6 73114035 73114190 -109301052 + MIR SINE MIR 20 176 -62 183 42 0 0 chr6 73114583 73114607 -109300635 + (TTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr6 73115502 73115524 -109299718 + AT_rich Low_complexity Low_complexity 1 22 0 255 242 147 42 chr6 73115898 73115993 -109299249 - MLT1J2 LTR MaLR -149 301 197 359 340 40 0 chr6 73116346 73116446 -109298796 - MIR SINE MIR -64 144 41 1165 168 176 12 chr6 73116446 73116702 -109298540 + AluSg SINE Alu 1 298 -2 1087 309 62 3 chr6 73117041 73117378 -109297864 - LTR16A LTR ERVL -8 442 86 22 0 0 0 chr6 73118216 73118238 -109297004 + AT_rich Low_complexity Low_complexity 1 22 0 234 91 0 0 chr6 73118409 73118442 -109296800 + (TG)n Simple_repeat Simple_repeat 2 34 0 216 329 0 13 chr6 73119952 73120028 -109295214 + MER5A DNA MER1_type 7 81 -108 304 270 79 24 chr6 73120917 73121043 -109294199 + MIR SINE MIR 72 204 -58 76 12 0 0 chr6 73121043 73121126 -109294116 + AT_rich Low_complexity Low_complexity 1 83 0 4452 132 30 88 chr6 73121290 73121781 -109293461 + Tigger1 DNA MER2_type 2 419 -1999 1368 197 10 44 chr6 73121781 73122075 -109293167 + AluJo SINE Alu 3 286 -26 4452 132 30 88 chr6 73122075 73122484 -109292758 + Tigger1 DNA MER2_type 419 850 -1568 17305 53 5 1 chr6 73122485 73125318 -109289924 + L1PA6 LINE L1 3159 6002 -152 6277 220 29 19 chr6 73125421 73129668 -109285574 - L1PA12 LINE L1 -2122 5462 7 264 327 96 29 chr6 73130571 73130675 -109284567 - L2 LINE L2 -37 3235 3125 463 331 228 18 chr6 73130893 73131443 -109283799 + L2 LINE L2 2386 3049 -264 26 0 0 0 chr6 73131527 73131553 -109283689 + AT_rich Low_complexity Low_complexity 1 26 0 381 223 11 0 chr6 73131594 73131688 -109283554 - MER53 DNA DNA -94 95 1 237 272 12 62 chr6 73131751 73131832 -109283410 + L2 LINE L2 3227 3303 -10 336 48 0 0 chr6 73131849 73131891 -109283351 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr6 73132210 73132231 -109283011 + AT_rich Low_complexity Low_complexity 1 21 0 202 171 53 13 chr6 73132517 73132593 -109282649 + (TA)n Simple_repeat Simple_repeat 2 80 0 251 175 19 19 chr6 73132719 73132822 -109282420 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 252 160 73 27 chr6 73132831 73132981 -109282261 + (TA)n Simple_repeat Simple_repeat 2 158 0 22 0 0 0 chr6 73132997 73133019 -109282223 + AT_rich Low_complexity Low_complexity 1 22 0 5476 148 45 7 chr6 73133112 73134068 -109281174 + L1PA8 LINE L1 3 994 -5869 5846 126 79 17 chr6 73134182 73135425 -109279817 + L1PA8 LINE L1 1845 3165 -3697 3924 230 38 20 chr6 73135421 73136579 -109278663 - L1 LINE L1 -2550 3596 2418 * 12336 127 8 8 chr6 73136679 73138014 -109277228 + L1PA8 LINE L1 3061 4399 -2463 192 40 0 0 chr6 73138014 73138039 -109277203 + (CAA)n Simple_repeat Simple_repeat 3 27 0 12336 127 8 8 chr6 73138039 73138690 -109276552 + L1PA8 LINE L1 4399 5048 -1814 6705 72 4 12 chr6 73138690 73139959 -109275283 + L1PA8 LINE L1 5272 6536 -352 2488 63 0 0 chr6 73139959 73140260 -109274982 + AluY SINE Alu 1 301 -10 6705 72 4 12 chr6 73140260 73140611 -109274631 + L1PA8 LINE L1 6536 6888 0 1255 85 0 0 chr6 73141688 73141853 -109273389 + AluY SINE Alu 145 309 -2 1022 285 6 22 chr6 73141853 73142176 -109273066 - L1ME LINE L1 -461 5705 5388 1630 281 74 33 chr6 73142678 73143744 -109271498 + L1ME2 LINE L1 4168 5277 -869 3264 103 44 12 chr6 73143756 73144251 -109270991 + MER9 LTR ERVK 1 511 0 1329 66 0 0 chr6 73144251 73144432 -109270810 + HERVK9 LTR ERVK 1 181 -5735 2365 118 46 22 chr6 73144432 73144846 -109270396 + L1PA13 LINE L1 5737 6160 -3 1468 283 67 36 chr6 73144862 73145696 -109269546 + L1ME2 LINE L1 5282 6141 -23 614 97 0 0 chr6 73145941 73146034 -109269208 - L1MA6 LINE L1 0 6300 6208 2217 113 0 0 chr6 73146215 73146517 -109268725 - AluSc SINE Alu -6 303 2 458 301 107 58 chr6 73147443 73147855 -109267387 + LTR33A LTR ERVL 3 434 -89 241 279 87 58 chr6 73149192 73149400 -109265842 + MIR SINE MIR 2 215 -47 863 212 45 149 chr6 73151964 73152186 -109263056 - MLT1A2 LTR MaLR -4 370 181 555 273 23 17 chr6 73152217 73152228 -109263014 - MLT1A2 LTR MaLR -201 173 164 2270 105 0 6 chr6 73152228 73152543 -109262699 - AluSp SINE Alu 0 313 1 555 273 23 17 chr6 73152543 73152703 -109262539 - MLT1A2 LTR MaLR -210 164 1 21 0 0 0 chr6 73153361 73153382 -109261860 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 73153527 73153548 -109261694 + (A)n Simple_repeat Simple_repeat 1 21 0 208 354 0 0 chr6 73153625 73153690 -109261552 + L2 LINE L2 3207 3271 -1 946 198 25 41 chr6 73154265 73154507 -109260735 - MER31A LTR ERV1 0 485 248 2801 143 41 0 chr6 73154607 73155090 -109260152 - L1PBa LINE L1 -4162 2701 2199 2485 181 24 12 chr6 73155306 73156281 -109258961 + L1PBb LINE L1 549 1536 -4668 248 100 0 0 chr6 73156284 73156324 -109258918 - L1PBa LINE L1 -6774 89 50 24 0 0 0 chr6 73157550 73157574 -109257668 + AT_rich Low_complexity Low_complexity 1 24 0 40 37 0 0 chr6 73157653 73157707 -109257535 + AT_rich Low_complexity Low_complexity 1 54 0 22 88 0 0 chr6 73158005 73158062 -109257180 + AT_rich Low_complexity Low_complexity 1 57 0 27 73 0 0 chr6 73158233 73158288 -109256954 + AT_rich Low_complexity Low_complexity 1 55 0 305 256 78 73 chr6 73158589 73158808 -109256434 - HAL1 LINE L1 -1446 1061 842 327 273 52 29 chr6 73158983 73159155 -109256087 - L1MEd LINE L1 -3567 2562 2387 361 324 39 19 chr6 73159423 73159784 -109255458 - L1MEd LINE L1 -3632 2497 2130 260 185 31 0 chr6 73159921 73159986 -109255256 + (TA)n Simple_repeat Simple_repeat 1 67 0 607 239 47 26 chr6 73160128 73160324 -109254918 + MER63A DNA MER1_type 10 209 -1 339 65 0 0 chr6 73160609 73160655 -109254587 + (CA)n Simple_repeat Simple_repeat 1 46 0 256 336 102 47 chr6 73160833 73161306 -109253936 - L1MEd LINE L1 -5369 750 252 180 0 0 0 chr6 73161866 73161886 -109253356 + (TG)n Simple_repeat Simple_repeat 2 21 0 326 235 0 25 chr6 73161886 73162005 -109253237 + (CATA)n Simple_repeat Simple_repeat 2 117 0 802 156 0 0 chr6 73162260 73162388 -109252854 - FLAM_C SINE Alu -4 129 2 31 0 0 0 chr6 73162583 73162614 -109252628 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 73162655 73162676 -109252566 + AT_rich Low_complexity Low_complexity 1 21 0 873 319 149 3 chr6 73163385 73163767 -109251475 - L2 LINE L2 -507 2807 2370 228 242 55 55 chr6 73163817 73163908 -109251334 - L2 LINE L2 -941 2373 2283 1983 75 8 0 chr6 73164027 73164280 -109250962 + AluY SINE Alu 45 299 -12 2103 130 0 0 chr6 73165011 73165310 -109249932 + AluSg SINE Alu 1 299 -11 1387 300 94 31 chr6 73165486 73166190 -109249052 - L2 LINE L2 -1039 2275 1528 475 272 8 32 chr6 73166284 73166409 -109248833 - L2 LINE L2 0 3313 3192 216 319 191 11 chr6 73167287 73167381 -109247861 + MER5A DNA MER1_type 76 186 -3 867 200 28 42 chr6 73167556 73167771 -109247471 + MER20 DNA MER1_type 7 218 -1 192 364 47 23 chr6 73168802 73168931 -109246311 - L2 LINE L2 0 3313 3182 1761 229 25 50 chr6 73169652 73170470 -109244772 + Charlie1 DNA MER1_type 1905 2761 0 1957 120 0 4 chr6 73170725 73171000 -109244242 + AluY SINE Alu 3 276 -35 387 0 0 0 chr6 73171008 73171051 -109244191 + (CA)n Simple_repeat Simple_repeat 2 44 0 806 379 74 67 chr6 73171069 73172066 -109243176 + HERVL LTR ERVL 3541 4544 -1110 1324 151 13 17 chr6 73172162 73172394 -109242848 - THE1C LTR MaLR 0 375 145 497 236 154 18 chr6 73173277 73173497 -109241745 + MER5C DNA MER1_type 75 324 0 22 0 0 0 chr6 73174888 73174910 -109240332 + AT_rich Low_complexity Low_complexity 1 22 0 1820 125 50 4 chr6 73175133 73175414 -109239828 - AluSx SINE Alu -18 294 1 1722 46 29 25 chr6 73176979 73177220 -109238022 + L1PA4 LINE L1 5914 6155 0 616 307 133 32 chr6 73177593 73178065 -109237177 + L2 LINE L2 2773 3291 -22 2456 78 0 0 chr6 73178355 73178662 -109236580 - AluY SINE Alu -4 307 1 233 167 19 0 chr6 73180053 73180107 -109235135 + (TG)n Simple_repeat Simple_repeat 1 55 0 233 380 5 20 chr6 73180246 73180361 -109234881 + MIR SINE MIR 10 126 -82 23 0 0 0 chr6 73180720 73180743 -109234499 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr6 73180780 73180815 -109234427 + AT_rich Low_complexity Low_complexity 1 35 0 249 291 42 30 chr6 73180835 73181000 -109234242 - L1ME LINE L1 -382 5739 5573 21 0 0 0 chr6 73181035 73181056 -109234186 + AT_rich Low_complexity Low_complexity 1 21 0 7582 30 0 1 chr6 73181481 73182608 -109232634 + L1PA4 LINE L1 5027 6152 -3 261 0 0 0 chr6 73182707 73182736 -109232506 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 201 175 0 105 chr6 73183534 73183591 -109231651 + polypyrimidine Low_complexity Low_complexity 5 55 0 240 264 0 0 chr6 73183769 73183822 -109231420 + (TG)n Simple_repeat Simple_repeat 1 53 0 22 56 0 0 chr6 73184989 73185025 -109230217 + AT_rich Low_complexity Low_complexity 1 36 0 1619 230 39 3 chr6 73185216 73185598 -109229644 + MSTD LTR MaLR 1 396 0 3170 160 28 28 chr6 73187505 73188148 -109227094 - L1MA6 LINE L1 -5 6295 5653 2837 176 20 17 chr6 73188155 73188332 -109226910 + L1 LINE L1 4657 4832 -1314 2500 209 4 6 chr6 73188332 73188819 -109226423 + MER66B LTR ERV1 1 486 0 2837 176 20 17 chr6 73188819 73189228 -109226014 + L1 LINE L1 4832 5245 -901 367 289 138 44 chr6 73191566 73191884 -109223358 - MLT1J1 LTR MaLR -3 443 96 25 0 0 0 chr6 73192701 73192726 -109222516 + AT_rich Low_complexity Low_complexity 1 25 0 579 214 48 105 chr6 73193744 73193992 -109221250 - MER106A DNA MER1_type 0 236 3 204 111 19 74 chr6 73194301 73194355 -109220887 + (CATTT)n Simple_repeat Simple_repeat 3 53 0 24 32 0 0 chr6 73195420 73195451 -109219791 + AT_rich Low_complexity Low_complexity 1 31 0 817 289 119 46 chr6 73195497 73195950 -109219292 - L2 LINE L2 0 3313 2828 1706 225 50 0 chr6 73196055 73196478 -109218764 - L1MD3 LINE L1 0 7995 7552 2396 72 3 3 chr6 73197692 73197998 -109217244 - AluY SINE Alu -5 306 1 24 0 0 0 chr6 73198553 73198577 -109216665 + AT_rich Low_complexity Low_complexity 1 24 0 438 296 26 9 chr6 73198745 73198860 -109216382 + MER5A DNA MER1_type 17 133 -56 1918 158 44 68 chr6 73199651 73200017 -109215225 - LTR18A LTR ERVL 0 357 1 1781 268 51 34 chr6 73200385 73201124 -109214118 + L1M4 LINE L1 4057 4808 -1338 245 229 43 0 chr6 73201208 73201278 -109213964 - HAL1 LINE L1 -158 2349 2277 2144 106 0 10 chr6 73202542 73202845 -109212397 + AluSx SINE Alu 2 301 -11 21 36 0 0 chr6 73203744 73203772 -109211470 + AT_rich Low_complexity Low_complexity 1 28 0 527 304 65 39 chr6 73204409 73204824 -109210418 - L1ME LINE L1 -4818 1399 974 2271 71 16 10 chr6 73204982 73205290 -109209952 - AluY SINE Alu -1 310 1 334 252 53 53 chr6 73205326 73205457 -109209785 + L1MC4 LINE L1 6589 6719 -1323 444 37 0 0 chr6 73205534 73205588 -109209654 + (TA)n Simple_repeat Simple_repeat 1 54 0 180 97 0 0 chr6 73205588 73205619 -109209623 + (CA)n Simple_repeat Simple_repeat 1 31 0 358 315 73 36 chr6 73205646 73205865 -109209377 - L1ME LINE L1 -5325 880 654 323 392 72 26 chr6 73206254 73206560 -109208682 - L1ME LINE L1 -5929 467 148 1918 222 102 25 chr6 73206863 73207023 -109208219 - Charlie1 DNA MER1_type 0 2761 2615 1480 203 4 11 chr6 73207023 73207344 -109207898 + AluJb SINE Alu 4 322 0 1918 222 102 25 chr6 73207344 73207827 -109207415 - Charlie1 DNA MER1_type -146 2615 2067 23 33 0 0 chr6 73207832 73207862 -109207380 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr6 73207913 73207936 -109207306 + AT_rich Low_complexity Low_complexity 1 23 0 245 386 55 0 chr6 73208282 73208445 -109206797 - MIR3 SINE MIR -5 203 32 182 356 0 23 chr6 73209422 73209509 -109205733 - L2 LINE L2 -1894 1420 1336 1716 161 63 38 chr6 73209907 73210273 -109204969 - THE1C LTR MaLR 0 375 1 287 49 24 0 chr6 73211536 73211577 -109203665 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 4161 268 66 46 chr6 73212022 73214467 -109200775 + L1M4 LINE L1 2490 4980 -1560 27 0 0 0 chr6 73214712 73214739 -109200503 + AT_rich Low_complexity Low_complexity 1 27 0 235 333 15 0 chr6 73214837 73214903 -109200339 - L2 LINE L2 -5 3308 3242 414 0 0 0 chr6 73214909 73214955 -109200287 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1966 141 10 10 chr6 73215155 73215467 -109199775 + AluSx SINE Alu 1 312 0 196 360 32 62 chr6 73215490 73215862 -109199380 - L2 LINE L2 -910 2404 2044 1675 139 60 38 chr6 73215884 73216251 -109198991 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr6 73216426 73216448 -109198794 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 73217466 73217487 -109197755 + AT_rich Low_complexity Low_complexity 1 21 0 565 280 77 22 chr6 73218956 73219138 -109196104 + MIR3 SINE MIR 4 195 -13 437 319 38 19 chr6 73220440 73220600 -109194642 - MIR3 SINE MIR -35 173 11 25 0 0 0 chr6 73223202 73223227 -109192015 + AT_rich Low_complexity Low_complexity 1 25 0 36441 98 11 11 chr6 73223748 73229898 -109185344 + L1PA6 LINE L1 11 6149 -5 49 0 0 0 chr6 73230200 73230249 -109184993 + AT_rich Low_complexity Low_complexity 1 49 0 362 323 48 44 chr6 73231857 73232105 -109183137 + L1M4 LINE L1 5652 5900 -678 786 155 11 66 chr6 73232113 73232294 -109182948 - FRAM SINE Alu -2 174 4 284 271 48 50 chr6 73232297 73232615 -109182627 + L1PA15 LINE L1 5499 5801 -320 25 0 0 0 chr6 73232929 73232954 -109182288 + AT_rich Low_complexity Low_complexity 1 25 0 3661 88 0 6 chr6 73234023 73234525 -109180717 + L1PA8 LINE L1 5491 5989 -183 1805 76 21 4 chr6 73234525 73234761 -109180481 + AluY SINE Alu 57 296 -15 195 42 0 0 chr6 73235304 73235328 -109179914 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1225 164 5 5 chr6 73235344 73235563 -109179679 + L1PA15 LINE L1 5943 6161 -4 11437 254 44 25 chr6 73235797 73241721 -109173521 - L1PB4 LINE L1 -2 6857 835 308 350 155 19 chr6 73242375 73242581 -109172661 + MIR SINE MIR 28 261 -1 2347 115 0 76 chr6 73242898 73243306 -109171936 + MER51B LTR ERV1 1 377 0 2302 91 0 10 chr6 73244091 73244399 -109170843 - AluSg SINE Alu -5 305 1 2746 178 79 23 chr6 73244716 73245285 -109169957 - LTR9 LTR ERV1 -1 611 11 25141 139 26 19 chr6 73245290 73249603 -109165639 - HUERS-P3b LTR ERV1 -1 7417 3073 530 230 0 0 chr6 73249603 73249703 -109165539 + LTR8 LTR ERV1 1 100 -591 9439 179 48 48 chr6 73249703 73251769 -109163473 - HUERS-P3b LTR ERV1 -5089 2329 264 620 137 21 0 chr6 73251771 73251866 -109163376 - HUERS-P3b LTR ERV1 -8808 111 15 2263 192 95 54 chr6 73251880 73252468 -109162774 - LTR9 LTR ERV1 0 612 1 1832 159 16 6 chr6 73252485 73252800 -109162442 + MER50 LTR ERV1 1 318 -416 1677 182 3 23 chr6 73252790 73253097 -109162145 + MER50 LTR ERV1 434 734 0 * 1334 152 13 17 chr6 73253101 73253332 -109161910 + MER30 DNA MER1_type 1 230 0 429 243 193 6 chr6 73253573 73253754 -109161488 + MER5C DNA MER1_type 1 215 -109 355 327 0 0 chr6 73253849 73253950 -109161292 + MER5A DNA MER1_type 9 109 -80 1900 144 0 17 chr6 73253982 73254280 -109160962 - MER4A LTR ERV1 0 664 372 1062 108 23 28 chr6 73254301 73254477 -109160765 - MER4A LTR ERV1 -489 175 1 818 237 28 88 chr6 73254516 73254879 -109160363 - L1ME1 LINE L1 -118 6048 5708 1476 219 41 25 chr6 73254995 73255387 -109159855 - L1MB4 LINE L1 -2 6178 5781 1972 229 29 14 chr6 73255445 73255960 -109159282 - L1MB4 LINE L1 -1007 5139 4617 1987 122 7 0 chr6 73256006 73256294 -109158948 + AluSg SINE Alu 1 290 -20 1864 138 7 30 chr6 73256375 73256673 -109158569 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr6 73260324 73260352 -109154890 + AT_rich Low_complexity Low_complexity 1 28 0 202 133 27 40 chr6 73260757 73260832 -109154410 + (TA)n Simple_repeat Simple_repeat 2 75 0 24 67 0 0 chr6 73262075 73262120 -109153122 + AT_rich Low_complexity Low_complexity 1 45 0 207 0 0 0 chr6 73262767 73262790 -109152452 + (A)n Simple_repeat Simple_repeat 1 23 0 2293 77 3 0 chr6 73263961 73264259 -109150983 + AluY SINE Alu 1 299 -12 23 33 0 0 chr6 73264459 73264489 -109150753 + AT_rich Low_complexity Low_complexity 1 30 0 860 221 70 109 chr6 73264601 73265013 -109150229 - MSTD LTR MaLR 0 396 1 52 58 0 0 chr6 73265041 73265128 -109150114 + AT_rich Low_complexity Low_complexity 1 87 0 1694 139 10 14 chr6 73265573 73265868 -109149374 - L1MA3 LINE L1 0 6305 6012 26 30 0 0 chr6 73265925 73265958 -109149284 + AT_rich Low_complexity Low_complexity 1 33 0 276 30 0 0 chr6 73266079 73266112 -109149130 + (CA)n Simple_repeat Simple_repeat 2 34 0 216 255 0 0 chr6 73266648 73266695 -109148547 + (TG)n Simple_repeat Simple_repeat 1 47 0 498 228 60 43 chr6 73266977 73267161 -109148081 - LTR68 LTR ERV1 -334 406 220 2373 53 0 53 chr6 73268958 73269277 -109145965 + AluY SINE Alu 1 302 -9 942 109 0 33 chr6 73269721 73269905 -109145337 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 278 131 33 0 chr6 73269905 73269966 -109145276 + CT-rich Low_complexity Low_complexity 4 66 0 286 250 15 0 chr6 73270673 73270741 -109144501 + MER39 LTR ERV1 1 69 -638 252 262 102 40 chr6 73270805 73270953 -109144289 - MER34 LTR ERV1 -254 453 101 22 70 0 0 chr6 73272130 73272173 -109143069 + AT_rich Low_complexity Low_complexity 1 43 0 1478 208 3 10 chr6 73272327 73272620 -109142622 + AluJo SINE Alu 1 291 -21 315 193 120 60 chr6 73273640 73273790 -109141452 - MER103 DNA DNA -7 159 1 224 370 16 53 chr6 73273882 73274071 -109141171 - MIR SINE MIR 0 262 81 5293 41 6 0 chr6 73274149 73274805 -109140437 - L1P LINE L1 -1776 4370 3711 1980 52 0 4 chr6 73274799 73275049 -109140193 + L1P LINE L1 3468 3716 -2430 * 249 33 0 0 chr6 73275366 73275396 -109139846 + (GA)n Simple_repeat Simple_repeat 2 31 0 2801 93 24 29 chr6 73275400 73275749 -109139493 - MLT2A2 LTR ERVL -45 408 60 2186 111 0 0 chr6 73275749 73276046 -109139196 - AluSg SINE Alu -13 297 1 2801 93 24 29 chr6 73276046 73276106 -109139136 - MLT2A2 LTR ERVL -393 60 1 411 284 58 26 chr6 73276877 73277032 -109138210 + MER20 DNA MER1_type 2 161 -58 312 91 0 0 chr6 73277033 73277077 -109138165 + (TC)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr6 73277969 73277992 -109137250 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr6 73278009 73278046 -109137196 + AT_rich Low_complexity Low_complexity 1 37 0 7631 94 15 13 chr6 73278284 73280193 -109135049 - L1PA7 LINE L1 0 6154 4233 879 270 68 35 chr6 73280415 73280895 -109134347 + MLT1E LTR MaLR 1 593 0 252 280 8 72 chr6 73281131 73281256 -109133986 + MER103 DNA DNA 40 156 -10 2202 120 7 0 chr6 73282130 73282438 -109132804 - AluSx SINE Alu -1 311 2 1272 226 52 131 chr6 73283037 73283532 -109131710 - MER67C LTR ERV1 0 514 59 284 181 24 84 chr6 73283568 73283651 -109131591 - MER67D LTR ERV1 -436 78 1 1152 251 144 24 chr6 73284111 73284522 -109130720 - L2 LINE L2 -457 2857 2398 257 316 20 10 chr6 73284882 73284980 -109130262 - L2 LINE L2 -911 2403 2305 209 197 45 0 chr6 73285033 73285099 -109130143 + (TATAA)n Simple_repeat Simple_repeat 5 73 0 723 284 4 74 chr6 73285123 73285394 -109129848 - L2 LINE L2 -1103 2211 1960 292 327 0 20 chr6 73285397 73285498 -109129744 - L2 LINE L2 -1890 1424 1326 7929 12 0 0 chr6 73285503 73286618 -109128624 + L1HS LINE L1 5041 6155 0 414 240 39 0 chr6 73286625 73286729 -109128513 - L2 LINE L2 -1993 1321 1214 22 0 0 0 chr6 73287140 73287162 -109128080 + AT_rich Low_complexity Low_complexity 1 22 0 1723 174 7 3 chr6 73287257 73287561 -109127681 + AluSx SINE Alu 1 305 -7 25 0 0 0 chr6 73287568 73287593 -109127649 + AT_rich Low_complexity Low_complexity 1 25 0 259 183 99 0 chr6 73287832 73287903 -109127339 - LTR37A LTR ERV1 -28 398 321 1156 193 38 67 chr6 73287943 73288382 -109126860 - MLT2A2 LTR ERVL 0 554 114 9012 113 12 0 chr6 73288382 73289996 -109125246 - HERVL LTR ERVL -916 4738 3053 1919 171 39 33 chr6 73290006 73290550 -109124692 - MLT2A2 LTR ERVL -2 552 3 526 201 65 41 chr6 73290559 73290728 -109124514 - LTR37A LTR ERV1 -228 198 26 26 82 0 0 chr6 73290746 73290807 -109124435 + AT_rich Low_complexity Low_complexity 1 61 0 196 415 11 0 chr6 73291599 73291693 -109123549 - L3 LINE CR1 -154 1423 1329 223 225 28 0 chr6 73291860 73291931 -109123311 + (TA)n Simple_repeat Simple_repeat 2 74 0 2784 34 0 28 chr6 73292304 73292659 -109122583 - L1PA3 LINE L1 -1159 4987 4643 7380 40 0 1 chr6 73292659 73293820 -109121422 + L1PA3 LINE L1 4992 6152 -3 27 29 0 0 chr6 73293832 73293866 -109121376 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 73294690 73294712 -109120530 + AT_rich Low_complexity Low_complexity 1 22 0 1610 199 122 12 chr6 73294913 73295340 -109119902 - MER101 LTR ERV1 0 474 1 2159 106 0 0 chr6 73295939 73296231 -109119011 - AluSc SINE Alu 0 309 18 609 263 7 7 chr6 73296979 73297116 -109118126 - LTR49-int LTR ERV1 -1130 3741 3605 355 179 13 51 chr6 73297201 73297279 -109117963 - LTR49-int LTR ERV1 -976 3960 3886 685 206 80 28 chr6 73297291 73297501 -109117741 - LTR49-int LTR ERV1 -1138 5457 3612 1121 213 69 93 chr6 73297723 73298352 -109116890 - LTR49-int LTR ERV1 -1949 4022 2481 631 210 20 46 chr6 73298422 73298617 -109116625 - LTR49-int LTR ERV1 -2873 3725 3536 591 274 195 16 chr6 73298795 73299236 -109116006 - LTR49-int LTR ERV1 -2564 2559 2040 469 227 8 30 chr6 73299377 73299509 -109115733 - LTR49-int LTR ERV1 -3071 1865 1737 1639 224 55 59 chr6 73299557 73300261 -109114981 - LTR49-int LTR ERV1 -3238 3093 1539 2108 246 36 32 chr6 73300988 73301680 -109113562 + L1MB5 LINE L1 5269 5963 -211 * 2143 189 101 0 chr6 73301672 73301808 -109113434 + L1MA4 LINE L1 5768 5889 -411 207 69 0 0 chr6 73301808 73301837 -109113405 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2143 189 101 0 chr6 73301837 73302175 -109113067 + L1MA4 LINE L1 5889 6290 -10 325 176 92 30 chr6 73302201 73302332 -109112910 + Charlie5 DNA MER1_type 2390 2528 -84 1516 168 81 31 chr6 73302350 73302707 -109112535 - THE1C LTR MaLR 0 375 1 235 313 83 0 chr6 73302718 73302814 -109112428 + L1MB5 LINE L1 5938 6041 -133 45 45 0 0 chr6 73302814 73302880 -109112362 + AT_rich Low_complexity Low_complexity 1 66 0 1037 199 14 50 chr6 73302880 73303161 -109112081 - L1MA4 LINE L1 -258 6042 5772 6456 93 22 7 chr6 73303161 73304200 -109111042 - L1PA8 LINE L1 -1 6171 5129 7451 122 15 6 chr6 73304200 73305370 -109109872 + L1PA8 LINE L1 3934 5114 -1032 2433 181 23 38 chr6 73305368 73306281 -109108961 - L1MA4 LINE L1 -512 5788 4889 * 512 207 26 7 chr6 73306285 73306420 -109108822 + L1MB5 LINE L1 6029 6177 -3 428 237 98 19 chr6 73306766 73307032 -109108210 - L1MDa LINE L1 -3934 2606 2320 4532 179 19 42 chr6 73307033 73307911 -109107331 - MER6 DNA MER2_type -7 858 1 557 272 26 10 chr6 73307911 73308106 -109107136 - L1MDa LINE L1 -4213 2327 2130 1116 265 95 51 chr6 73308152 73308764 -109106478 - L1MDa LINE L1 -4989 1554 916 298 299 26 17 chr6 73309441 73309558 -109105684 - L1MDa LINE L1 -5936 594 477 236 274 57 9 chr6 73309962 73310068 -109105174 - L1M4 LINE L1 -2662 3982 3872 244 267 30 122 chr6 73310154 73310285 -109104957 - MIR SINE MIR -28 234 116 23 0 0 0 chr6 73310597 73310620 -109104622 + AT_rich Low_complexity Low_complexity 1 23 0 831 303 134 67 chr6 73311594 73312211 -109103031 - MLT2F LTR ERVL 0 663 5 55 94 0 0 chr6 73312338 73312498 -109102744 + AT_rich Low_complexity Low_complexity 1 160 0 416 223 22 86 chr6 73313381 73313520 -109101722 + MER58C DNA MER1_type 84 213 -2 190 348 59 17 chr6 73313523 73313641 -109101601 + L2 LINE L2 3190 3312 -1 39688 48 2 2 chr6 73313655 73318610 -109096632 + L1P LINE L1 8 4959 -1187 504 293 26 60 chr6 73318730 73318996 -109096246 - L1M4 LINE L1 -5790 752 496 6762 74 5 1 chr6 73319002 73319892 -109095350 - L1PA6 LINE L1 -8 6146 5254 26 0 0 0 chr6 73320052 73320078 -109095164 + AT_rich Low_complexity Low_complexity 1 26 0 249 57 0 0 chr6 73322138 73322173 -109093069 + (TA)n Simple_repeat Simple_repeat 2 36 0 46 19 0 0 chr6 73322891 73322944 -109092298 + AT_rich Low_complexity Low_complexity 1 53 0 2485 40 0 37 chr6 73323032 73323355 -109091887 - AluY SINE Alu 0 311 1 21 36 0 0 chr6 73324607 73324635 -109090607 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 73324857 73324890 -109090352 + AT_rich Low_complexity Low_complexity 1 33 0 256 207 126 46 chr6 73325299 73325386 -109089856 - MER58C DNA MER1_type -120 95 2 1060 209 0 20 chr6 73325719 73325920 -109089322 + AluJo SINE Alu 4 200 -112 1338 234 58 21 chr6 73326020 73326396 -109088846 - MER92B LTR ERV1 -246 390 1 297 185 0 0 chr6 73326834 73326899 -109088343 + (TA)n Simple_repeat Simple_repeat 2 66 0 793 320 16 13 chr6 73326909 73327218 -109088024 - MER93a LTR ERV1 -3 399 90 1598 113 13 0 chr6 73327283 73327512 -109087730 + AluSq SINE Alu 66 297 -16 1231 330 144 12 chr6 73327965 73328955 -109086287 - L2 LINE L2 0 3313 2173 1918 107 4 7 chr6 73329315 73329586 -109085656 + AluSq SINE Alu 1 270 -43 777 101 7 65 chr6 73329589 73329767 -109085475 + AluSp/q SINE Alu 176 313 0 28 29 0 0 chr6 73329821 73329856 -109085386 + AT_rich Low_complexity Low_complexity 1 35 0 272 122 0 0 chr6 73330104 73330145 -109085097 + MADE1 DNA Mariner 1 41 -39 207 273 39 39 chr6 73330590 73330667 -109084575 - L2 LINE L2 -4 3309 3233 886 186 0 0 chr6 73331541 73331734 -109083508 + AluY SINE Alu 119 311 0 22 56 0 0 chr6 73331839 73331875 -109083367 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr6 73332077 73332112 -109083130 + AT_rich Low_complexity Low_complexity 1 35 0 233 363 94 19 chr6 73332388 73332548 -109082694 + MIR SINE MIR 20 191 -71 199 315 0 0 chr6 73332735 73332789 -109082453 - L2 LINE L2 -30 3283 3230 390 74 0 0 chr6 73332942 73332996 -109082246 + (TA)n Simple_repeat Simple_repeat 2 55 0 204 200 0 0 chr6 73334253 73334303 -109080939 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 381 22 0 0 chr6 73334349 73334395 -109080847 + (TA)n Simple_repeat Simple_repeat 1 46 0 239 300 0 40 chr6 73334560 73334660 -109080582 + L1MC4 LINE L1 6608 6703 -1339 427 109 406 0 chr6 73334944 73335045 -109080197 - L1PA7 LINE L1 0 6154 6013 21 82 0 0 chr6 73335559 73335608 -109079634 + AT_rich Low_complexity Low_complexity 1 49 0 781 227 9 68 chr6 73336030 73336250 -109078992 - MER63A DNA MER1_type -3 207 1 195 42 0 0 chr6 73336919 73336943 -109078299 + (TC)n Simple_repeat Simple_repeat 1 24 0 730 234 5 5 chr6 73336943 73337131 -109078111 - AluSx SINE Alu -2 308 121 773 192 8 0 chr6 73337232 73337362 -109077880 - AluSx SINE Alu -181 131 1 15101 48 1 4 chr6 73337866 73339768 -109075474 - L1P LINE L1 -3664 2482 587 21 36 0 0 chr6 73341218 73341246 -109073996 + AT_rich Low_complexity Low_complexity 1 28 0 11366 60 12 1 chr6 73341468 73342941 -109072301 - L1P LINE L1 -3382 2764 1275 4341 48 0 2 chr6 73342931 73343498 -109071744 + L1P LINE L1 2746 3311 -2835 * 3297 153 115 30 chr6 73343498 73344404 -109070838 + pTR5 LTR ERV1 743 2025 -413 275 286 10 0 chr6 73344404 73344502 -109070740 + LTR30 LTR ERV1 544 642 -80 1466 114 0 9 chr6 73344506 73344726 -109070516 + pTR5 LTR ERV1 172 389 -2049 10360 39 1 0 chr6 73344726 73345989 -109069253 + L1P LINE L1 3305 4568 -1578 1312 193 34 99 chr6 73346782 73347067 -109068175 + MLT1A2 LTR MaLR 1 256 -118 1857 166 10 0 chr6 73347067 73347375 -109067867 - AluSx SINE Alu -1 311 1 1312 193 34 99 chr6 73347375 73347473 -109067769 + MLT1A2 LTR MaLR 256 359 -15 21 0 0 0 chr6 73347531 73347552 -109067690 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 73347638 73347662 -109067580 + AT_rich Low_complexity Low_complexity 1 24 0 243 267 0 0 chr6 73347728 73347814 -109067428 + CT-rich Low_complexity Low_complexity 4 89 0 247 302 78 17 chr6 73348299 73348415 -109066827 - MIR SINE MIR -20 242 120 314 350 71 20 chr6 73348637 73348834 -109066408 + MIR SINE MIR 2 208 -54 201 74 0 0 chr6 73350414 73350441 -109064801 + (TTA)n Simple_repeat Simple_repeat 1 27 0 183 309 62 12 chr6 73351048 73351129 -109064113 - MIR SINE MIR -56 206 122 2513 238 92 11 chr6 73351957 73352620 -109062622 + L1MA5 LINE L1 77 793 -6416 9537 201 54 12 chr6 73352764 73353564 -109061678 + L1MA5 LINE L1 3939 4704 -2658 198 0 0 0 chr6 73353564 73353586 -109061656 + (CAA)n Simple_repeat Simple_repeat 3 24 0 9537 201 54 12 chr6 73353586 73356075 -109059167 + L1MA5 LINE L1 4704 7362 0 467 247 115 24 chr6 73356375 73356626 -109058616 + L1ME1 LINE L1 5889 6178 0 284 270 22 11 chr6 73356808 73356897 -109058345 - MER58 DNA MER1_type -2140 280 191 23 0 0 0 chr6 73357190 73357213 -109058029 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chr6 73357993 73358040 -109057202 + AT_rich Low_complexity Low_complexity 1 47 0 1113 167 6 0 chr6 73358397 73358577 -109056665 + AluSx SINE Alu 1 181 -131 203 291 40 54 chr6 73358657 73358805 -109056437 - MIR SINE MIR -100 162 17 1289 339 92 52 chr6 73359295 73360212 -109055030 - MER45C DNA AcHobo 0 953 1 1636 167 0 21 chr6 73360593 73360860 -109054382 + AluSx SINE Alu 23 285 -27 540 0 0 0 chr6 73360860 73360920 -109054322 + (CTAAA)n Simple_repeat Simple_repeat 1 60 0 1636 167 0 21 chr6 73360920 73360933 -109054309 + AluSx SINE Alu 285 297 -15 1044 171 45 0 chr6 73361737 73361913 -109053329 - MLT1-int LTR MaLR -6 1729 1546 368 263 8 11 chr6 73361903 73362030 -109053212 - MLT1-int LTR MaLR -340 1392 961 * 665 238 72 45 chr6 73362178 73362401 -109052841 - MLT1-int LTR MaLR -623 748 520 27 29 0 0 chr6 73363920 73363954 -109051288 + AT_rich Low_complexity Low_complexity 1 34 0 234 0 0 0 chr6 73364007 73364033 -109051209 + (CA)n Simple_repeat Simple_repeat 1 26 0 1388 199 14 17 chr6 73364067 73364364 -109050878 - MLT1A1 LTR MaLR -60 305 10 28 29 0 0 chr6 73366010 73366045 -109049197 + AT_rich Low_complexity Low_complexity 1 35 0 443 265 95 44 chr6 73366140 73366457 -109048785 + HAL1b LINE L1 210 542 -806 27 0 0 0 chr6 73366842 73366869 -109048373 + AT_rich Low_complexity Low_complexity 1 27 0 1164 262 77 25 chr6 73366992 73367435 -109047807 - HsTC2 DNA Tc2 -1432 466 1 212 206 10 62 chr6 73367709 73367806 -109047436 + A-rich Low_complexity Low_complexity 3 94 0 212 273 28 35 chr6 73367822 73367965 -109047277 + A-rich Low_complexity Low_complexity 1 142 0 1965 90 0 0 chr6 73368216 73368471 -109046771 - AluSc SINE Alu -54 255 1 869 268 43 77 chr6 73368641 73369059 -109046183 + L1M4 LINE L1 31 434 -6108 216 0 0 0 chr6 73369079 73369103 -109046139 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 469 245 10 0 chr6 73369103 73369205 -109046037 - L1PB4 LINE L1 -7 6149 6047 * 875 116 0 7 chr6 73369203 73369355 -109045887 + L1P5 LINE L1 5565 5700 -456 1532 293 28 5 chr6 73369373 73369799 -109045443 + L1M4 LINE L1 482 917 -5625 1722 148 43 10 chr6 73369804 73370108 -109045134 - MSTA LTR MaLR -1 427 114 2090 95 23 87 chr6 73370108 73370318 -109044924 - THE1B LTR MaLR 0 364 189 1659 161 19 19 chr6 73370318 73370628 -109044614 - AluSx SINE Alu -2 310 1 2090 95 23 87 chr6 73370628 73370806 -109044436 - THE1B LTR MaLR -175 189 1 3665 118 23 0 chr6 73370806 73371329 -109043913 - THE1B-int LTR MaLR 0 1580 1046 326 98 82 33 chr6 73371329 73371390 -109043852 - MSTA LTR MaLR -300 64 1 * 716 153 8 0 chr6 73371390 73371507 -109043735 - MSTA LTR MaLR -310 118 1 1761 270 76 82 chr6 73371544 73371804 -109043438 + L1M4 LINE L1 957 1217 -5429 321 183 17 0 chr6 73371804 73371864 -109043378 + U7 snRNA snRNA 2 62 -1 1761 270 76 82 chr6 73371864 73372422 -109042820 + L1M4 LINE L1 1217 1777 -4869 742 171 14 0 chr6 73372422 73372562 -109042680 - L1PA16 LINE L1 -4 6162 6021 1761 270 76 82 chr6 73372562 73373500 -109041742 + L1M4 LINE L1 1777 2704 -3942 225 0 0 0 chr6 73373500 73373525 -109041717 + (CA)n Simple_repeat Simple_repeat 2 26 0 1761 270 76 82 chr6 73373525 73373575 -109041667 + L1M4 LINE L1 2704 2753 -3893 428 342 48 29 chr6 73373575 73373952 -109041290 - ERVL LTR ERVL -455 5199 4816 438 187 0 0 chr6 73374016 73374091 -109041151 - AluSg/x SINE Alu -35 277 203 309 63 16 48 chr6 73374491 73374554 -109040688 + (CAAAA)n Simple_repeat Simple_repeat 5 65 0 610 356 24 0 chr6 73374575 73374780 -109040462 - ERVL LTR ERVL -1398 4366 4157 234 94 19 38 chr6 73375379 73375432 -109039810 + (TG)n Simple_repeat Simple_repeat 1 52 0 29 28 0 0 chr6 73375603 73375639 -109039603 + AT_rich Low_complexity Low_complexity 1 36 0 30 69 0 0 chr6 73376766 73376824 -109038418 + AT_rich Low_complexity Low_complexity 1 58 0 32 43 0 0 chr6 73377013 73377059 -109038183 + AT_rich Low_complexity Low_complexity 1 46 0 631 355 63 31 chr6 73377291 73377674 -109037568 + L2 LINE L2 2845 3239 -74 258 200 0 0 chr6 73377708 73377749 -109037493 + (TA)n Simple_repeat Simple_repeat 2 45 -16 180 0 0 0 chr6 73377749 73377769 -109037473 + (TC)n Simple_repeat Simple_repeat 2 21 0 258 200 0 0 chr6 73377769 73377787 -109037455 + (TA)n Simple_repeat Simple_repeat 44 61 0 203 100 0 25 chr6 73377907 73377947 -109037295 + (TA)n Simple_repeat Simple_repeat 1 39 0 2357 76 7 0 chr6 73378050 73378351 -109036891 - AluY SINE Alu -8 303 1 37 76 0 0 chr6 73378654 73378733 -109036509 + AT_rich Low_complexity Low_complexity 1 79 0 2173 101 0 3 chr6 73380259 73380555 -109034687 - AluY SINE Alu -16 295 1 22 0 0 0 chr6 73381055 73381077 -109034165 + AT_rich Low_complexity Low_complexity 1 22 0 495 354 57 14 chr6 73382362 73382712 -109032530 - ERVL LTR ERVL -810 4954 4590 373 264 55 55 chr6 73382731 73382894 -109032348 + HERVL LTR ERVL 4207 4369 -1285 1623 246 55 45 chr6 73383173 73384685 -109030557 - L1MB7 LINE L1 -5 6677 5066 462 228 27 47 chr6 73384785 73384934 -109030308 - L1MB7 LINE L1 -1544 5100 4955 3281 107 45 2 chr6 73385055 73385568 -109029674 - L1PA13 LINE L1 -5 6158 5624 4968 180 20 19 chr6 73385590 73386619 -109028623 - L1MA4 LINE L1 -16 6284 5254 228 211 64 58 chr6 73386626 73386797 -109028445 - L1MB7 LINE L1 -1669 4975 4804 546 268 13 44 chr6 73386799 73387027 -109028215 - L1MB7 LINE L1 -1962 4682 4462 * 640 260 23 83 chr6 73387002 73387433 -109027809 - L1MB7 LINE L1 -5216 1326 922 2284 75 0 3 chr6 73387574 73387895 -109027347 - L1P LINE L1 -964 5182 4863 5830 81 5 1 chr6 73387895 73388701 -109026541 + L1P LINE L1 2935 3743 -2403 1573 173 4 4 chr6 73389656 73389933 -109025309 + AluJo SINE Alu 1 277 -35 8110 86 5 0 chr6 73390422 73391539 -109023703 + L1P LINE L1 3742 4864 -1282 2878 133 56 10 chr6 73391599 73392082 -109023160 - MER84 LTR ERV1 -2 505 1 8802 146 22 3 chr6 73392082 73393489 -109021753 - MER84-int LTR ERV1 0 4954 3521 676 130 186 37 chr6 73393489 73393650 -109021592 + MSTA LTR MaLR 1 185 -243 4901 128 21 5 chr6 73393650 73394397 -109020845 - MER84-int LTR ERV1 -2662 2292 1534 599 179 64 58 chr6 73394379 73394552 -109020690 + pTR5 LTR ERV1 726 899 -1539 * 4979 128 1 27 chr6 73394543 73395355 -109019887 + pTR5 LTR ERV1 1648 2438 0 10230 137 13 1 chr6 73395356 73396878 -109018364 - MER84-int LTR ERV1 -3413 1541 1 2186 234 30 74 chr6 73396878 73397408 -109017834 - MER84 LTR ERV1 0 507 1 363 296 38 50 chr6 73397421 73397580 -109017662 - L1MB7 LINE L1 -6105 437 281 28 61 0 0 chr6 73398300 73398349 -109016893 + AT_rich Low_complexity Low_complexity 1 49 0 1481 230 28 45 chr6 73398837 73398879 -109016363 - MLT2D LTR ERVL 0 464 423 306 0 0 0 chr6 73398879 73398913 -109016329 + (TG)n Simple_repeat Simple_repeat 2 35 0 1481 230 28 45 chr6 73398913 73399346 -109015896 - MLT2D LTR ERVL -41 423 6 198 355 105 0 chr6 73399658 73399734 -109015508 - L2 LINE L2 -51 3221 3138 206 320 21 10 chr6 73399910 73400007 -109015235 - L2 LINE L2 -1313 2001 1904 1849 263 36 23 chr6 73400874 73401566 -109013676 - L1ME2 LINE L1 -1 6163 5463 700 235 156 42 chr6 73401621 73402076 -109013166 - L1ME2 LINE L1 -948 5198 4692 325 176 120 78 chr6 73402239 73402381 -109012861 - L1ME2 LINE L1 -1543 4603 4456 1721 167 39 3 chr6 73402666 73402996 -109012246 - Tigger7 DNA MER2_type -3 2584 2243 510 257 27 16 chr6 73402990 73403185 -109012057 + Tigger7 DNA MER2_type 71 323 -410 * 1615 55 0 0 chr6 73403185 73403384 -109011858 - L1PA7 LINE L1 -12 6142 5944 510 257 27 16 chr6 73403384 73403413 -109011829 + Tigger7 DNA MER2_type 323 350 -383 23 33 0 0 chr6 73404185 73404215 -109011027 + AT_rich Low_complexity Low_complexity 1 30 0 300 90 30 45 chr6 73404469 73404536 -109010706 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 2155 101 0 3 chr6 73404536 73404844 -109010398 - AluSc SINE Alu -2 307 1 584 72 12 0 chr6 73406413 73406496 -109008746 + L1PA13 LINE L1 6064 6147 -16 351 0 0 0 chr6 73406608 73406647 -109008595 + (CA)n Simple_repeat Simple_repeat 2 40 0 1043 209 21 38 chr6 73406877 73407112 -109008130 + AluJb SINE Alu 55 285 -27 1686 145 29 73 chr6 73407120 73407464 -109007778 + MER4E LTR ERV1 419 747 -32 3502 182 19 8 chr6 73407756 73408459 -109006783 - MER67C LTR ERV1 0 710 1 21 0 0 0 chr6 73409255 73409276 -109005966 + AT_rich Low_complexity Low_complexity 1 21 0 699 65 0 0 chr6 73409601 73409694 -109005548 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 2813 116 7 36 chr6 73409831 73410278 -109004964 - MER57B LTR ERV1 0 434 1 1541 86 126 0 chr6 73410278 73410500 -109004742 - MER57B-int LTR ERV1 0 7537 7288 678 125 0 0 chr6 73410500 73410596 -109004646 - LTR54B LTR ERV1 -393 105 10 3653 133 45 0 chr6 73410602 73411174 -109004068 - MER57B-int LTR ERV1 -389 7148 6551 3033 152 13 0 chr6 73411201 73411675 -109003567 - MER57B-int LTR ERV1 -7057 480 1 481 72 58 0 chr6 73411676 73411745 -109003497 - MER57B LTR ERV1 -1 433 361 2155 69 33 4 chr6 73411961 73412237 -109003005 - AluY SINE Alu -14 297 14 21 71 0 0 chr6 73412569 73412611 -109002631 + AT_rich Low_complexity Low_complexity 1 42 0 306 243 29 15 chr6 73415007 73415143 -109000099 + (TA)n Simple_repeat Simple_repeat 1 138 0 231 133 0 22 chr6 73415587 73415632 -108999610 + L1MA9 LINE L1 5238 5281 -865 2138 101 28 0 chr6 73415632 73415919 -108999323 + AluSg SINE Alu 1 295 -15 270 106 0 0 chr6 73415919 73415966 -108999276 + (TA)n Simple_repeat Simple_repeat 1 47 0 2728 199 68 32 chr6 73415978 73416637 -108998605 + L1MA9 LINE L1 5442 6124 -188 180 176 0 0 chr6 73417402 73417436 -108997806 + (CA)n Simple_repeat Simple_repeat 1 34 0 24 53 0 0 chr6 73417633 73417671 -108997571 + AT_rich Low_complexity Low_complexity 1 38 0 848 256 166 32 chr6 73417867 73418301 -108996941 + MLT1D LTR MaLR 14 505 0 195 382 38 6 chr6 73418664 73418821 -108996421 + MIR SINE MIR 49 210 -52 403 274 0 0 chr6 73418938 73419022 -108996220 - MER81 DNA DNA -30 84 1 239 197 76 0 chr6 73419231 73419297 -108995945 + MLT1D LTR MaLR 430 500 -5 26 0 0 0 chr6 73419496 73419522 -108995720 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr6 73420046 73420074 -108995168 + AT_rich Low_complexity Low_complexity 1 28 0 559 276 49 5 chr6 73420285 73420470 -108994772 + MIR SINE MIR 31 223 -39 22 0 0 0 chr6 73420891 73420913 -108994329 + AT_rich Low_complexity Low_complexity 1 22 0 1723 174 7 3 chr6 73421008 73421312 -108993930 + AluSx SINE Alu 1 305 -7 25 0 0 0 chr6 73421319 73421344 -108993898 + AT_rich Low_complexity Low_complexity 1 25 0 259 183 99 0 chr6 73421583 73421654 -108993588 - LTR37A LTR ERV1 -28 398 321 1156 193 38 67 chr6 73421694 73422133 -108993109 - MLT2A2 LTR ERVL 0 554 114 11640 114 15 0 chr6 73422133 73423794 -108991448 - HERVL LTR ERVL -916 4738 3053 1919 171 39 33 chr6 73423804 73424348 -108990894 - MLT2A2 LTR ERVL -2 552 3 526 201 65 41 chr6 73424357 73424526 -108990716 - LTR37A LTR ERV1 -228 198 26 26 82 0 0 chr6 73424544 73424605 -108990637 + AT_rich Low_complexity Low_complexity 1 61 0 204 404 11 0 chr6 73425392 73425486 -108989756 - L3 LINE CR1 -154 1423 1329 223 225 28 0 chr6 73425653 73425724 -108989518 + (TA)n Simple_repeat Simple_repeat 2 74 0 2759 37 0 28 chr6 73426097 73426452 -108988790 - L1PA3 LINE L1 -1159 4987 4643 7474 36 0 0 chr6 73426452 73427614 -108987628 + L1PA3 LINE L1 4992 6152 -3 562 194 16 24 chr6 73428286 73428410 -108986832 - FRAM SINE Alu -18 158 36 300 266 108 16 chr6 73428417 73428645 -108986597 - L1ME2 LINE L1 -289 5881 5640 556 331 74 26 chr6 73428764 73429075 -108986167 - MLT1I LTR MaLR -3 406 81 24 75 0 0 chr6 73429753 73429793 -108985449 + AT_rich Low_complexity Low_complexity 1 40 0 43 71 0 0 chr6 73430057 73430142 -108985100 + AT_rich Low_complexity Low_complexity 1 85 0 1311 245 54 44 chr6 73430516 73431014 -108984228 - MLT1D LTR MaLR 0 505 3 24 100 0 0 chr6 73431118 73431198 -108984044 + AT_rich Low_complexity Low_complexity 1 80 0 5120 212 3 11 chr6 73431485 73432640 -108982602 + L1P LINE L1 2360 3505 -2641 445 332 103 45 chr6 73432995 73433558 -108981684 - L1M4 LINE L1 -2887 3259 2730 249 33 0 0 chr6 73433558 73433588 -108981654 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1969 118 38 0 chr6 73433588 73433875 -108981367 - AluSx SINE Alu -14 298 1 445 332 103 45 chr6 73433875 73433952 -108981290 - L1M4 LINE L1 -3415 2731 2581 4858 263 101 40 chr6 73434631 73434936 -108980306 - L1 LINE L1 -3386 3720 3435 1818 195 19 0 chr6 73434936 73435295 -108979947 - MER47A DNA MER2_type 0 366 1 4858 263 101 40 chr6 73435295 73438728 -108976514 - L1 LINE L1 -3671 3435 42 490 307 100 17 chr6 73438858 73439089 -108976153 - MIR SINE MIR -1 261 12 292 366 133 17 chr6 73440581 73440928 -108974314 - L3 LINE CR1 -11 1566 1180 387 192 26 0 chr6 73441382 73441460 -108973782 + MER101B LTR ERV1 2 81 -489 7250 48 17 4 chr6 73442498 73444154 -108971088 - L1PA5 LINE L1 -11 6143 4475 1843 135 21 3 chr6 73544729 73545018 -108870224 - AluSc SINE Alu -13 296 3 566 304 84 35 chr6 73545910 73546314 -108868928 - MER90 LTR ERV1 -77 537 114 1151 303 19 28 chr6 73546442 73546864 -108868378 + L1M3b LINE L1 9 426 -5855 1941 227 2 7 chr6 73546995 73547445 -108867797 - L1M4 LINE L1 -2041 4105 3658 * 3223 206 15 9 chr6 73547425 73548166 -108867076 - L1 LINE L1 -1744 4402 3658 2672 221 41 31 chr6 73548279 73548879 -108866363 - L1 LINE L1 -1938 4208 3616 320 0 25 0 chr6 73548879 73548919 -108866323 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 2672 221 41 31 chr6 73548919 73548938 -108866304 - L1 LINE L1 -2530 3616 3599 1767 73 59 44 chr6 73548938 73549211 -108866031 - AluSc SINE Alu -32 277 1 2672 221 41 31 chr6 73549211 73549277 -108865965 - L1 LINE L1 -2547 3599 3515 1800 122 25 18 chr6 73549396 73549682 -108865560 - AluY SINE Alu -17 294 7 812 236 79 0 chr6 73549685 73549888 -108865354 - L1MB5 LINE L1 -131 6043 5825 559 280 76 29 chr6 73549942 73550363 -108864879 - L1MEc LINE L1 -4574 2251 1811 2983 75 10 0 chr6 73550401 73550800 -108864442 - L1PA7 LINE L1 -3 6151 5749 1149 98 25 0 chr6 73550800 73550963 -108864279 + L1P2 LINE L1 5442 5608 -546 33 43 0 0 chr6 73551828 73551875 -108863367 + AT_rich Low_complexity Low_complexity 1 47 0 703 240 98 27 chr6 73553081 73553490 -108861752 + MER114 LTR ERV 26 463 -185 33 0 0 0 chr6 73553595 73553628 -108861614 + AT_rich Low_complexity Low_complexity 1 33 0 470 299 88 5 chr6 73553836 73554030 -108861212 - LTR50 LTR ERVL -585 210 1 339 256 34 17 chr6 73554073 73554190 -108861052 + L1ME3A LINE L1 1527 1645 -4751 323 346 39 47 chr6 73554444 73554698 -108860544 + L1ME LINE L1 5484 5735 -429 378 322 0 17 chr6 73554979 73555097 -108860145 - MLT1J LTR MaLR -268 243 128 390 159 29 0 chr6 73556277 73556346 -108858896 + MSTB LTR MaLR 1 71 -355 10456 188 23 11 chr6 73556416 73559641 -108855601 + L1MA3 LINE L1 3036 6305 0 2067 180 21 13 chr6 73559645 73560028 -108855214 + MSTB LTR MaLR 41 426 0 25 0 0 0 chr6 73560056 73560081 -108855161 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr6 73560197 73560240 -108855002 + AT_rich Low_complexity Low_complexity 1 43 0 242 279 157 23 chr6 73560479 73560651 -108854591 - L1MEc LINE L1 -6342 200 6 29 60 0 0 chr6 73560776 73560826 -108854416 + AT_rich Low_complexity Low_complexity 1 50 0 203 386 0 14 chr6 73560913 73560983 -108854259 - L2 LINE L2 -250 3022 2954 186 191 0 0 chr6 73561403 73561450 -108853792 + (CA)n Simple_repeat Simple_repeat 2 48 0 224 265 0 0 chr6 73562292 73562341 -108852901 + (TA)n Simple_repeat Simple_repeat 1 49 0 277 185 0 37 chr6 73562391 73562445 -108852797 - L1ME LINE L1 -503 5667 5616 348 320 45 15 chr6 73562574 73562774 -108852468 + L1ME3A LINE L1 3164 3369 -2846 515 319 108 29 chr6 73562990 73563435 -108851807 + L1ME3A LINE L1 4188 4667 -1548 273 173 12 25 chr6 73563735 73563816 -108851426 + GA-rich Low_complexity Low_complexity 1 80 0 304 315 148 10 chr6 73564178 73564483 -108850759 + L1ME3A LINE L1 5382 5728 -507 29 47 0 0 chr6 73564574 73564617 -108850625 + AT_rich Low_complexity Low_complexity 1 43 0 380 267 79 25 chr6 73564633 73564835 -108850407 + L1ME3A LINE L1 5814 6026 -213 26 30 0 0 chr6 73565453 73565486 -108849756 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr6 73565688 73565724 -108849518 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 73565751 73565773 -108849469 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 73565901 73565930 -108849312 + AT_rich Low_complexity Low_complexity 1 29 0 238 191 0 0 chr6 73566198 73566245 -108848997 + (CATA)n Simple_repeat Simple_repeat 2 48 0 24 77 0 0 chr6 73566254 73566306 -108848936 + AT_rich Low_complexity Low_complexity 1 52 0 262 254 30 0 chr6 73567159 73567226 -108848016 - LTR66 LTR ERVL -153 457 389 202 379 124 17 chr6 73568342 73568519 -108846723 + L2 LINE L2 2858 3053 -260 189 107 0 0 chr6 73568520 73568548 -108846694 + (TATG)n Simple_repeat Simple_repeat 3 30 0 454 264 64 0 chr6 73568615 73568740 -108846502 + L2 LINE L2 3180 3312 -1 209 324 147 15 chr6 73568976 73569112 -108846130 + MIR SINE MIR 59 212 -50 585 293 35 6 chr6 73569811 73569985 -108845257 + MIR SINE MIR 84 262 0 246 214 12 60 chr6 73570679 73570763 -108844479 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 391 250 76 15 chr6 73571007 73571139 -108844103 + L1ME3A LINE L1 6017 6156 -83 266 361 10 0 chr6 73571228 73571325 -108843917 - L2 LINE L2 -1 3271 3174 21 82 0 0 chr6 73571387 73571436 -108843806 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr6 73571560 73571590 -108843652 + AT_rich Low_complexity Low_complexity 1 30 0 401 240 201 34 chr6 73571590 73571794 -108843448 - L1ME2 LINE L1 -9 6155 5918 1007 163 38 57 chr6 73572011 73572084 -108843158 - AluSx SINE Alu -107 205 132 2414 65 3 7 chr6 73572084 73572394 -108842848 - AluY SINE Alu 0 311 3 1007 163 38 57 chr6 73572394 73572529 -108842713 - AluSx SINE Alu -180 132 1 5629 225 35 42 chr6 73572530 73572774 -108842468 - L1 LINE L1 -2441 3887 3643 2153 102 75 12 chr6 73572774 73573108 -108842134 + THE1A LTR MaLR 1 355 0 5629 225 35 42 chr6 73573108 73575528 -108839714 - L1 LINE L1 -2685 3643 1206 2235 123 0 0 chr6 73575528 73575838 -108839404 - AluSg SINE Alu 0 310 1 5629 225 35 42 chr6 73575838 73576576 -108838666 - L1 LINE L1 -5122 1206 542 2303 91 0 25 chr6 73576576 73576894 -108838348 - AluSq SINE Alu -3 310 1 5629 225 35 42 chr6 73576894 73577419 -108837823 - L1 LINE L1 -5786 542 14 338 146 0 58 chr6 73577576 73577679 -108837563 + (TTTA)n Simple_repeat Simple_repeat 1 97 0 295 152 46 7 chr6 73577679 73577830 -108837412 + (TA)n Simple_repeat Simple_repeat 1 157 0 333 0 0 0 chr6 73577870 73577907 -108837335 + (TG)n Simple_repeat Simple_repeat 2 38 0 1956 151 43 23 chr6 73577909 73578260 -108836982 + THE1B LTR MaLR 7 364 0 10212 121 26 6 chr6 73578260 73579808 -108835434 + THE1B-int LTR MaLR 1 1580 0 1716 169 45 53 chr6 73579808 73580163 -108835079 + THE1B LTR MaLR 1 352 -12 366 23 0 0 chr6 73580179 73580222 -108835020 + (TG)n Simple_repeat Simple_repeat 2 44 0 615 276 87 25 chr6 73580234 73580792 -108834450 - L1M4c LINE L1 -2818 3564 2947 679 277 52 70 chr6 73580808 73582070 -108833172 - L1M4c LINE L1 -3536 2846 1491 2044 129 7 3 chr6 73582075 73582377 -108832865 - AluSq SINE Alu -10 303 1 950 209 24 5 chr6 73582398 73582608 -108832634 - L1MA6 LINE L1 -22 6278 6065 465 254 55 15 chr6 73582913 73583128 -108832114 - L1ME2 LINE L1 -299 5871 5649 28 29 0 0 chr6 73583128 73583163 -108832079 + AT_rich Low_complexity Low_complexity 1 35 0 298 306 28 42 chr6 73583199 73583343 -108831899 + L2 LINE L2 3133 3274 -39 759 271 57 4 chr6 73583347 73583628 -108831614 - L1ME2 LINE L1 -551 5613 5318 4637 200 18 21 chr6 73583652 73585296 -108829946 - L1PA15 LINE L1 -2 6814 5182 3751 251 41 32 chr6 73585298 73586623 -108828619 - L1PA15 LINE L1 -3616 3181 1836 1893 149 0 7 chr6 73586623 73586919 -108828323 - AluSx SINE Alu -18 294 1 3751 251 41 32 chr6 73586919 73587577 -108827665 - L1PA15 LINE L1 -4961 1836 1185 518 258 0 17 chr6 73587580 73587700 -108827542 - L1PA15 LINE L1 -6669 118 1 21 0 0 0 chr6 73587890 73587911 -108827331 + AT_rich Low_complexity Low_complexity 1 21 0 1767 221 24 28 chr6 73587983 73588408 -108826834 - MSTB LTR MaLR 0 426 4 4597 202 54 3 chr6 73588566 73589549 -108825693 - L1MC1 LINE L1 -18 6315 5283 261 227 0 76 chr6 73589872 73589938 -108825304 - L2 LINE L2 -7 3306 3246 195 404 0 32 chr6 73590066 73590160 -108825082 - L2 LINE L2 -212 3060 2970 242 319 80 26 chr6 73590404 73590517 -108824725 + L2 LINE L2 3193 3311 -2 43040 47 3 1 chr6 73593784 73599919 -108815323 + L1PA4 LINE L1 3 6153 -2 372 324 14 22 chr6 73600488 73600627 -108814615 + MIR SINE MIR 111 248 -14 198 336 71 10 chr6 73601233 73601334 -108813908 + MIR SINE MIR 72 177 -67 2556 259 26 29 chr6 73601470 73603055 -108812187 + L1MC1 LINE L1 4287 5866 -467 2130 100 7 13 chr6 73603130 73603439 -108811803 + AluSg SINE Alu 1 307 -3 21 36 0 0 chr6 73603579 73603607 -108811635 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 73604451 73604472 -108810770 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr6 73605583 73605614 -108809628 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 73605746 73605791 -108809451 + AT_rich Low_complexity Low_complexity 1 45 0 229 204 0 0 chr6 73606168 73606222 -108809020 + L1MC4 LINE L1 6649 6702 -1340 276 335 41 77 chr6 73606423 73606644 -108808598 - MIR SINE MIR -2 260 48 650 332 20 28 chr6 73608323 73608573 -108806669 - MIR SINE MIR -13 249 2 244 212 33 50 chr6 73608603 73608676 -108806566 - MIR SINE MIR -63 145 91 192 361 89 56 chr6 73608726 73609028 -108806214 - L2 LINE L2 -798 2516 2205 2399 223 20 7 chr6 73609546 73610085 -108805157 - LTR35 LTR ERV1 0 618 73 463 291 50 89 chr6 73610604 73610839 -108804403 + L2 LINE L2 2537 2759 -555 990 260 5 0 chr6 73610839 73611058 -108804184 - MER58A DNA MER1_type -3 221 2 463 291 50 89 chr6 73611058 73611124 -108804118 + L2 LINE L2 2759 2826 -488 744 266 113 4 chr6 73611317 73611546 -108803696 + MIR SINE MIR 3 256 -6 187 395 104 0 chr6 73611539 73611673 -108803569 + L2 LINE L2 3166 3313 0 * 36 0 0 0 chr6 73612148 73612184 -108803058 + AT_rich Low_complexity Low_complexity 1 36 0 319 343 75 8 chr6 73612286 73612420 -108802822 + L2 LINE L2 3170 3312 -1 271 133 17 17 chr6 73612792 73612852 -108802390 + CT-rich Low_complexity Low_complexity 1 60 0 1616 181 7 3 chr6 73612852 73613145 -108802097 - AluSx SINE Alu -5 307 14 1005 293 113 38 chr6 73613614 73614619 -108800623 - L1MC4 LINE L1 -13 8029 6780 221 83 28 0 chr6 73614619 73614655 -108800587 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1005 293 113 38 chr6 73614655 73615100 -108800142 - L1MC4 LINE L1 -1262 6780 6370 283 270 11 11 chr6 73615187 73615276 -108799966 + CT-rich Low_complexity Low_complexity 2 90 0 1088 197 0 0 chr6 73615355 73615548 -108799694 + AluJo SINE Alu 96 288 -24 1275 253 151 53 chr6 73615658 73615878 -108799364 - L1MC4a LINE L1 -1641 6167 5970 243 61 0 0 chr6 73615878 73615911 -108799331 + (CA)n Simple_repeat Simple_repeat 2 34 0 1275 253 151 53 chr6 73615911 73616506 -108798736 - L1MC4a LINE L1 -1838 5970 5272 1217 215 32 0 chr6 73616499 73616778 -108798464 - L1MA4 LINE L1 -964 5182 4895 * 1126 178 39 19 chr6 73616767 73616890 -108798352 + L1MA4 LINE L1 5176 5295 -1005 * 247 24 0 48 chr6 73616890 73616932 -108798310 + (CAAAA)n Simple_repeat Simple_repeat 4 43 0 1126 178 39 19 chr6 73616932 73617750 -108797492 + L1MA4 LINE L1 5295 6300 0 34 0 0 0 chr6 73617904 73617938 -108797304 + AT_rich Low_complexity Low_complexity 1 34 0 14072 35 0 1 chr6 73617938 73620406 -108794836 - L1PA4 LINE L1 -3 6152 3686 236 252 118 67 chr6 73620528 73620647 -108794595 - L1MC4a LINE L1 -1145 5001 4877 228 116 0 0 chr6 73620679 73620722 -108794520 + LTR66 LTR ERVL 399 441 -169 236 226 21 54 chr6 73620744 73620837 -108794405 - L1MC4 LINE L1 -1339 6703 6614 * 241 272 11 11 chr6 73620760 73620852 -108794390 + L1MC4 LINE L1 6614 6705 -1337 1048 151 97 0 chr6 73624247 73624432 -108790810 + AluJb SINE Alu 91 293 -19 28 0 0 0 chr6 73624848 73624876 -108790366 + AT_rich Low_complexity Low_complexity 1 28 0 293 219 0 37 chr6 73626130 73626212 -108789030 - MIR SINE MIR 0 262 184 21 36 0 0 chr6 73626729 73626757 -108788485 + AT_rich Low_complexity Low_complexity 1 28 0 1853 135 20 7 chr6 73626928 73627225 -108788017 - AluSx SINE Alu -11 301 1 377 343 5 52 chr6 73627738 73627948 -108787294 + L2 LINE L2 1377 1576 -1738 953 205 24 11 chr6 73628186 73628439 -108786803 + L1MA4 LINE L1 6043 6301 -4 26 0 0 0 chr6 73628923 73628949 -108786293 + AT_rich Low_complexity Low_complexity 1 26 0 1961 133 0 3 chr6 73629855 73630140 -108785102 + AluSx SINE Alu 1 284 -28 196 299 52 13 chr6 73630987 73631064 -108784178 + MIR SINE MIR 144 223 -39 184 400 25 12 chr6 73631222 73631302 -108783940 + L2 LINE L2 2588 2668 -646 367 322 61 37 chr6 73634205 73634419 -108780823 + MIR SINE MIR 3 221 -41 6020 38 3 4 chr6 73634881 73635618 -108779624 - L1PA4 LINE L1 0 6155 5420 3619 96 23 2 chr6 73635623 73636146 -108779096 - L1PA7 LINE L1 0 6154 5621 356 264 0 11 chr6 73636152 73636243 -108778999 - L1MC4 LINE L1 -1339 6703 6614 219 173 0 0 chr6 73636251 73636303 -108778939 + (TA)n Simple_repeat Simple_repeat 2 53 0 325 245 0 64 chr6 73636311 73636405 -108778837 - L1MC4 LINE L1 -1339 6703 6616 314 214 0 82 chr6 73636427 73636525 -108778717 - L1MC4 LINE L1 -1339 6703 6614 222 174 0 0 chr6 73636533 73636579 -108778663 + (TA)n Simple_repeat Simple_repeat 2 47 0 2372 75 0 3 chr6 73637824 73638132 -108777110 - AluY SINE Alu -4 307 1 342 283 70 62 chr6 73639186 73639444 -108775798 + MLT1K LTR MaLR 321 580 -8 347 60 20 0 chr6 73639711 73639761 -108775481 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 330 259 100 53 chr6 73639767 73639937 -108775305 + MIR SINE MIR 71 248 -14 30 0 0 0 chr6 73640253 73640283 -108774959 + AT_rich Low_complexity Low_complexity 1 30 0 1937 185 51 40 chr6 73640351 73640779 -108774463 - MLT2C2 LTR ERVL -27 437 5 748 220 144 44 chr6 73641144 73641394 -108773848 + MLT1A1 LTR MaLR 78 352 -13 224 341 0 0 chr6 73643148 73643239 -108772003 + T-rich Low_complexity Low_complexity 1 91 0 189 0 0 0 chr6 73643540 73643561 -108771681 + (TTCTC)n Simple_repeat Simple_repeat 4 24 0 1320 261 102 44 chr6 73643662 73644252 -108770990 - MLT1E3 LTR MaLR 0 624 1 44 35 0 0 chr6 73644451 73644509 -108770733 + AT_rich Low_complexity Low_complexity 1 58 0 46 33 0 0 chr6 73647365 73647425 -108767817 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr6 73647600 73647621 -108767621 + AT_rich Low_complexity Low_complexity 1 21 0 938 340 161 19 chr6 73647722 73648558 -108766684 + L2 LINE L2 1740 2694 -620 5441 157 9 37 chr6 73648566 73649413 -108765829 - L1PA13 LINE L1 -1 6162 5356 1845 123 63 0 chr6 73649413 73649713 -108765529 - AluSq SINE Alu 0 317 1 5441 157 9 37 chr6 73649713 73650281 -108764961 - L1PA13 LINE L1 -807 5356 4773 690 215 89 44 chr6 73650281 73650551 -108764691 + pTR5 LTR ERV1 743 1024 -1414 3759 140 44 42 chr6 73650620 73651307 -108763935 + LTR12 LTR ERV1 1 688 0 762 99 83 0 chr6 73651307 73651428 -108763814 + LTR12 LTR ERV1 582 712 -2 5343 197 29 2 chr6 73651428 73652498 -108762744 - L1PA13 LINE L1 -1368 4778 3677 225 0 0 0 chr6 73652498 73652523 -108762719 + (TTG)n Simple_repeat Simple_repeat 3 27 0 5343 197 29 2 chr6 73652523 73652535 -108762707 - L1PA13 LINE L1 -2469 3677 3667 2134 190 126 0 chr6 73652531 73653015 -108762227 + L1PA13 LINE L1 3121 3665 -2481 * 242 337 11 11 chr6 73653035 73653124 -108762118 + L2 LINE L2 2713 2801 -513 202 286 18 9 chr6 73653413 73653525 -108761717 + A-rich Low_complexity Low_complexity 1 113 0 26 74 0 0 chr6 73653768 73653822 -108761420 + AT_rich Low_complexity Low_complexity 1 54 0 41 82 0 0 chr6 73654870 73654967 -108760275 + AT_rich Low_complexity Low_complexity 1 97 0 22 0 0 0 chr6 73655819 73655841 -108759401 + AT_rich Low_complexity Low_complexity 1 22 0 2552 96 25 0 chr6 73655904 73656268 -108758974 - L1MA1 LINE L1 -30 6272 5900 22 35 0 0 chr6 73656448 73656477 -108758765 + AT_rich Low_complexity Low_complexity 1 29 0 183 239 0 0 chr6 73656619 73656665 -108758577 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 2274 92 0 7 chr6 73657518 73657823 -108757419 + AluSq SINE Alu 1 303 -10 1437 198 29 0 chr6 73658005 73658283 -108756959 - AluJb SINE Alu -26 286 1 297 0 0 0 chr6 73658498 73658531 -108756711 + (CA)n Simple_repeat Simple_repeat 2 34 0 447 297 123 24 chr6 73658681 73658893 -108756349 - MIR SINE MIR -11 251 19 23 86 0 0 chr6 73660252 73660310 -108754932 + AT_rich Low_complexity Low_complexity 1 58 0 766 213 125 56 chr6 73660495 73660782 -108754460 + L1 LINE L1 4890 5196 -950 1242 156 128 0 chr6 73660842 73661060 -108754182 + MER41E LTR ERV1 1 246 -266 261 0 0 0 chr6 73661278 73661307 -108753935 + (GA)n Simple_repeat Simple_repeat 2 30 0 1770 184 24 16 chr6 73662729 73663105 -108752137 - L1MA8 LINE L1 -169 6122 5744 544 349 85 28 chr6 73663525 73663923 -108751319 - LTR16A LTR ERVL -29 421 1 228 314 122 48 chr6 73664359 73664588 -108750654 + MIR SINE MIR 3 248 -14 21 57 0 0 chr6 73664863 73664898 -108750344 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 73665656 73665677 -108749565 + AT_rich Low_complexity Low_complexity 1 21 0 319 145 0 40 chr6 73666286 73666362 -108748880 + (CATA)n Simple_repeat Simple_repeat 3 75 0 342 377 50 13 chr6 73666729 73666968 -108748274 - ERVL LTR ERVL -1373 4391 4144 367 339 83 57 chr6 73667072 73667580 -108747662 - ERVL LTR ERVL -1331 3665 3145 717 362 40 20 chr6 73667905 73668303 -108746939 - ERVL LTR ERVL -1922 3074 2669 1023 246 23 0 chr6 73668382 73668642 -108746600 - L1MA8 LINE L1 -24 6267 6002 1929 130 3 3 chr6 73668957 73669242 -108746000 - AluSq SINE Alu -24 289 5 203 327 101 38 chr6 73669503 73669662 -108745580 - MIR SINE MIR -30 232 64 23 54 0 0 chr6 73670601 73670638 -108744604 + AT_rich Low_complexity Low_complexity 1 37 0 554 182 9 0 chr6 73670638 73670748 -108744494 - L1MA9 LINE L1 -22 6290 6180 3109 197 46 31 chr6 73670752 73672197 -108743045 - L1MA9 LINE L1 -89 6079 4547 731 217 44 66 chr6 73672194 73672403 -108742839 + L1 LINE L1 4271 4474 -1672 * 2329 89 3 13 chr6 73672403 73672716 -108742526 + AluY SINE Alu 1 310 -1 731 217 44 66 chr6 73672716 73672778 -108742464 + L1 LINE L1 4474 4536 -1610 367 382 20 0 chr6 73672799 73672951 -108742291 - MIR SINE MIR -77 185 31 597 236 0 0 chr6 73673016 73673190 -108742052 + (TA)n Simple_repeat Simple_repeat 1 174 0 309 207 0 0 chr6 73673204 73673291 -108741951 + (TA)n Simple_repeat Simple_repeat 1 87 0 1224 252 76 74 chr6 73673305 73673422 -108741820 - L1MB7 LINE L1 -37 6147 6032 1233 270 84 5 chr6 73673422 73673789 -108741453 - MSTD LTR MaLR 0 396 1 1224 252 76 74 chr6 73673789 73674236 -108741006 - L1MB7 LINE L1 -152 6032 5579 1496 137 13 8 chr6 73674236 73674470 -108740772 - AluSx SINE Alu -44 268 34 1224 252 76 74 chr6 73674470 73674578 -108740664 - L1MB7 LINE L1 -605 5579 5473 812 199 68 1 chr6 73674697 73674885 -108740357 - L1P4 LINE L1 -648 5520 5321 1848 219 55 2 chr6 73674888 73675344 -108739898 - L1MC1 LINE L1 -5 6328 5849 631 125 133 25 chr6 73675344 73675464 -108739778 + AluSg1 SINE Alu 1 133 -176 2619 219 71 22 chr6 73675464 73676183 -108739059 - L1MC1 LINE L1 -483 5850 5073 2827 6 0 0 chr6 73676183 73676494 -108738748 + AluY SINE Alu 1 311 0 2619 219 71 22 chr6 73676494 73676904 -108738338 - L1MC1 LINE L1 -1260 5073 4685 1636 244 28 60 chr6 73676914 73677550 -108737692 - L1MC1 LINE L1 -2074 4072 3457 2926 184 63 5 chr6 73677565 73678212 -108737030 - L1MA4 LINE L1 -5 6295 5611 720 243 0 0 chr6 73678216 73678391 -108736851 - AluSg/x SINE Alu 0 309 135 5596 220 67 20 chr6 73678392 73678519 -108736723 - L1MA4 LINE L1 -680 5620 5500 2439 73 0 13 chr6 73678519 73678834 -108736408 - AluY SINE Alu 0 311 1 5596 220 67 20 chr6 73678834 73679009 -108736233 - L1MA4 LINE L1 -800 5500 5335 1322 242 13 0 chr6 73679009 73679307 -108735935 - AluJb SINE Alu -9 303 2 5596 220 67 20 chr6 73679307 73679415 -108735827 - L1MA4 LINE L1 -965 5335 5234 2441 81 0 0 chr6 73679415 73679725 -108735517 - AluY SINE Alu -1 310 1 5596 220 67 20 chr6 73679725 73681148 -108734094 - L1MA4 LINE L1 -1066 5234 3686 1108 129 45 0 chr6 73681155 73681333 -108733909 - AluSg/x SINE Alu 0 312 127 2493 58 3 3 chr6 73681336 73681647 -108733595 - AluY SINE Alu 0 311 1 1859 207 36 10 chr6 73682556 73682943 -108732299 + MER44D DNA MER2_type 1 452 -153 362 172 43 17 chr6 73682941 73683057 -108732185 + MER44D DNA MER2_type 407 525 -80 * 185 180 0 16 chr6 73683060 73683121 -108732121 + (TA)n Simple_repeat Simple_repeat 1 60 0 338 198 25 0 chr6 73683148 73683305 -108731937 + (TA)n Simple_repeat Simple_repeat 1 161 0 416 208 24 4 chr6 73683332 73683793 -108731449 + (TA)n Simple_repeat Simple_repeat 1 470 0 320 230 115 18 chr6 73685594 73685759 -108729483 + MER53 DNA DNA 1 181 -8 320 247 14 0 chr6 73686067 73686140 -108729102 - L1MD3 LINE L1 -1191 6804 6731 227 173 123 62 chr6 73686254 73686271 -108728971 - Tigger5 DNA MER2_type -1 2322 2307 604 51 13 0 chr6 73686271 73686350 -108728892 - MADE1 DNA Mariner 0 80 1 227 173 123 62 chr6 73686350 73686413 -108728829 - Tigger5 DNA MER2_type -16 2307 2237 297 0 0 0 chr6 73687957 73687990 -108727252 + (CA)n Simple_repeat Simple_repeat 2 34 0 1102 186 29 25 chr6 73688603 73688877 -108726365 + L1MA9 LINE L1 6027 6301 -11 404 265 85 35 chr6 73689232 73689549 -108725693 + HAL1 LINE L1 822 1154 -1353 1740 267 22 13 chr6 73689563 73690016 -108725226 + L1MD1 LINE L1 19 475 -6065 1556 176 26 66 chr6 73690022 73690402 -108724840 + MLT1A1 LTR MaLR 1 365 0 1902 233 43 67 chr6 73690414 73691924 -108723318 + L1MD1 LINE L1 4747 6149 -487 1322 190 64 51 chr6 73692024 73692413 -108722829 + L1MD1 LINE L1 6235 6628 -8 352 318 55 50 chr6 73692423 73692643 -108722599 + HAL1 LINE L1 1150 1370 -1137 296 303 85 48 chr6 73692685 73692873 -108722369 - LTR16C LTR ERVL -13 478 284 189 0 0 0 chr6 73692903 73692924 -108722318 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3739 168 89 12 chr6 73692958 73693725 -108721517 - LTR1B LTR ERV1 0 826 1 248 301 21 42 chr6 73693793 73693936 -108721306 - HAL1 LINE L1 -978 1529 1390 1087 282 61 65 chr6 73694096 73694753 -108720489 + HAL1 LINE L1 1464 2117 -390 318 282 149 58 chr6 73694847 73695021 -108720221 + MER69 DNA AcHobo 6 195 -2331 21 57 0 0 chr6 73695590 73695625 -108719617 + AT_rich Low_complexity Low_complexity 1 35 0 33 85 0 0 chr6 73696288 73696370 -108718872 + AT_rich Low_complexity Low_complexity 1 82 0 234 224 17 0 chr6 73696737 73696795 -108718447 + (TAA)n Simple_repeat Simple_repeat 1 59 0 384 299 112 37 chr6 73696801 73697015 -108718227 - MIR SINE MIR -8 254 25 212 206 33 11 chr6 73697323 73697415 -108717827 + (TA)n Simple_repeat Simple_repeat 2 95 0 273 159 0 80 chr6 73698002 73698090 -108717152 - L1MC4 LINE L1 -1349 6693 6613 322 206 0 41 chr6 73698093 73698166 -108717076 + L1MCa LINE L1 1995 2064 -4362 1752 152 0 0 chr6 73698168 73698431 -108716811 - AluSq SINE Alu -26 287 25 650 177 34 11 chr6 73698929 73699104 -108716138 + (CATA)n Simple_repeat Simple_repeat 2 180 0 255 238 0 79 chr6 73699115 73699216 -108716026 + L1MC4 LINE L1 6614 6706 -1336 389 233 22 22 chr6 73699216 73699306 -108715936 + (CATG)n Simple_repeat Simple_repeat 3 92 0 487 251 0 22 chr6 73699307 73699490 -108715752 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 310 313 18 0 chr6 73699497 73699609 -108715633 + (TATG)n Simple_repeat Simple_repeat 2 115 0 810 219 37 82 chr6 73699615 73699885 -108715357 - AluJo SINE Alu -43 269 12 2450 45 3 32 chr6 73700490 73700804 -108714438 + AluY SINE Alu 1 305 -6 186 392 27 7 chr6 73701089 73701237 -108714005 - L2 LINE L2 -963 2351 2201 1621 258 96 38 chr6 73701444 73702081 -108713161 + MER76 LTR ERV 2 675 -13 224 30 30 0 chr6 73702968 73703001 -108712241 + (TC)n Simple_repeat Simple_repeat 2 35 0 708 60 0 20 chr6 73703173 73703273 -108711969 - L1PA8 LINE L1 0 6172 6075 22 0 0 0 chr6 73704456 73704478 -108710764 + AT_rich Low_complexity Low_complexity 1 22 0 1998 107 3 41 chr6 73704556 73704874 -108710368 + AluSc SINE Alu 1 306 -3 25 83 0 0 chr6 73705184 73705244 -108709998 + AT_rich Low_complexity Low_complexity 1 60 0 31 26 0 0 chr6 73705470 73705508 -108709734 + AT_rich Low_complexity Low_complexity 1 38 0 274 214 113 124 chr6 73705918 73706193 -108709049 - MLT1G LTR MaLR -224 366 95 271 206 54 54 chr6 73706301 73706393 -108708849 + MIR SINE MIR 116 207 -55 218 182 0 0 chr6 73706506 73706550 -108708692 + CT-rich Low_complexity Low_complexity 2 45 0 28 86 0 0 chr6 73706648 73706718 -108708524 + AT_rich Low_complexity Low_complexity 1 70 0 349 210 30 7 chr6 73707678 73707981 -108707261 + (TA)n Simple_repeat Simple_repeat 1 310 0 362 202 23 0 chr6 73708008 73708181 -108707061 + (TA)n Simple_repeat Simple_repeat 2 178 0 362 207 23 0 chr6 73708200 73708374 -108706868 + (TA)n Simple_repeat Simple_repeat 2 179 0 250 197 0 16 chr6 73708401 73708462 -108706780 + (TA)n Simple_repeat Simple_repeat 1 60 0 393 171 34 17 chr6 73708465 73708582 -108706660 - MER44D DNA MER2_type -80 525 407 * 1895 202 36 10 chr6 73708580 73708967 -108706275 - MER44D DNA MER2_type -153 452 1 2439 47 3 3 chr6 73709879 73710177 -108705065 + AluY SINE Alu 1 298 -13 2156 64 13 39 chr6 73710280 73710592 -108704650 + AluY SINE Alu 1 304 -7 2757 13 0 0 chr6 73711662 73711970 -108703272 - AluY SINE Alu -3 308 1 236 256 0 128 chr6 73712189 73712306 -108702936 - L2 LINE L2 -54 3259 3158 261 222 0 0 chr6 73712934 73712997 -108702245 + (TA)n Simple_repeat Simple_repeat 2 64 0 284 266 35 127 chr6 73713554 73713703 -108701539 - L1M4 LINE L1 -6331 211 89 2164 122 0 6 chr6 73713703 73714015 -108701227 - AluSg SINE Alu 0 310 1 284 266 35 127 chr6 73714015 73714094 -108701148 - L1M4 LINE L1 -6453 89 4 23 92 0 0 chr6 73714185 73714250 -108700992 + AT_rich Low_complexity Low_complexity 1 65 0 363 316 81 21 chr6 73714545 73714779 -108700463 - L1MEc LINE L1 -3992 2404 2157 21 71 0 0 chr6 73715023 73715065 -108700177 + AT_rich Low_complexity Low_complexity 1 42 0 2375 143 11 0 chr6 73715199 73715570 -108699672 + THE1C LTR MaLR 1 375 0 8811 146 19 41 chr6 73715570 73717184 -108698058 + THE1C-int LTR MaLR 1 1579 -1 1938 165 71 3 chr6 73717200 73717551 -108697691 + THE1C LTR MaLR 1 375 0 1028 203 109 60 chr6 73718296 73718681 -108696561 - Charlie1b DNA MER1_type -110 413 10 315 163 188 0 chr6 73720664 73720744 -108694498 + FLAM_A SINE Alu 39 133 0 1193 222 0 4 chr6 73720906 73721145 -108694097 - MSTB2 LTR MaLR 0 457 220 2067 199 16 37 chr6 73721157 73721594 -108693648 - MSTC LTR MaLR 0 428 1 24 0 0 0 chr6 73722423 73722447 -108692795 + AT_rich Low_complexity Low_complexity 1 24 0 1423 198 45 3 chr6 73723387 73723675 -108691567 + AluJb SINE Alu 1 300 -12 25 31 0 0 chr6 73724047 73724079 -108691163 + AT_rich Low_complexity Low_complexity 1 32 0 970 188 74 3 chr6 73724372 73724614 -108690628 + L1MA8 LINE L1 6032 6285 -6 7977 200 26 10 chr6 73725010 73726280 -108688962 + L1PA16 LINE L1 3416 4664 -1502 215 30 0 30 chr6 73726280 73726313 -108688929 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7977 200 26 10 chr6 73726313 73727735 -108687507 + L1PA16 LINE L1 4664 6150 -16 417 184 0 34 chr6 73728744 73728891 -108686351 + GA-rich Low_complexity Low_complexity 6 147 0 28 29 0 0 chr6 73729717 73729752 -108685490 + AT_rich Low_complexity Low_complexity 1 35 0 28 91 0 0 chr6 73731035 73731112 -108684130 + AT_rich Low_complexity Low_complexity 1 77 0 294 106 0 0 chr6 73731803 73731850 -108683392 + (TG)n Simple_repeat Simple_repeat 2 48 0 243 276 35 0 chr6 73732962 73733049 -108682193 + (TATG)n Simple_repeat Simple_repeat 1 90 0 267 253 72 0 chr6 73733050 73733133 -108682109 - L1MC4 LINE L1 -1339 6703 6615 241 279 35 0 chr6 73733091 73733177 -108682065 + L1MC4 LINE L1 6615 6703 -1339 * 2016 90 3 35 chr6 73733358 73733689 -108681553 - AluSg SINE Alu 0 322 1 270 0 0 0 chr6 73734133 73734163 -108681079 + (TTA)n Simple_repeat Simple_repeat 2 31 0 490 287 96 0 chr6 73734197 73734448 -108680794 + MER114 LTR ERV 323 597 -51 24 53 0 0 chr6 73734879 73734917 -108680325 + AT_rich Low_complexity Low_complexity 1 38 0 560 208 0 0 chr6 73735612 73735718 -108679524 - FLAM_A SINE Alu -19 123 18 27 29 0 0 chr6 73736027 73736061 -108679181 + AT_rich Low_complexity Low_complexity 1 34 0 458 270 149 32 chr6 73736801 73737039 -108678203 - MER61D LTR ERV1 -10 497 263 740 278 0 11 chr6 73737083 73737259 -108677983 - LTR28 LTR ERV1 -846 174 1 857 139 54 0 chr6 73738423 73738589 -108676653 + L1MA8 LINE L1 6113 6287 -4 190 365 66 0 chr6 73739044 73739181 -108676061 + L2 LINE L2 663 808 -2506 239 254 0 18 chr6 73739254 73739265 -108675977 + MER3 DNA MER1_type 37 46 -163 282 259 232 9 chr6 73739265 73739314 -108675928 - MER3 DNA MER1_type 0 209 172 199 0 31 31 chr6 73739314 73739346 -108675896 + (TTAAA)n Simple_repeat Simple_repeat 1 32 0 282 259 232 9 chr6 73739346 73739408 -108675834 - MER3 DNA MER1_type -37 172 73 251 345 113 11 chr6 73739727 73739904 -108675338 - L2 LINE L2 -9 3304 3110 1026 277 81 88 chr6 73740370 73740890 -108674352 + LTR40a LTR ERVL 4 519 0 207 0 0 0 chr6 73741035 73741058 -108674184 + (GAA)n Simple_repeat Simple_repeat 2 24 0 445 251 118 13 chr6 73741232 73741384 -108673858 - MER69A DNA AcHobo -9 168 1 24 32 0 0 chr6 73741493 73741524 -108673718 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr6 73741758 73741787 -108673455 + AT_rich Low_complexity Low_complexity 1 29 0 41 36 0 0 chr6 73741968 73742023 -108673219 + AT_rich Low_complexity Low_complexity 1 55 0 1964 132 0 69 chr6 73742252 73742586 -108672656 + AluSx SINE Alu 1 311 -1 2550 217 16 46 chr6 73743113 73743845 -108671397 - MER67C LTR ERV1 0 710 1 24 0 0 0 chr6 73744039 73744063 -108671179 + AT_rich Low_complexity Low_complexity 1 24 0 895 151 7 13 chr6 73744133 73744285 -108670957 + AluSc SINE Alu 159 309 0 26 50 0 0 chr6 73744419 73744459 -108670783 + AT_rich Low_complexity Low_complexity 1 40 0 25 65 0 0 chr6 73745025 73745071 -108670171 + AT_rich Low_complexity Low_complexity 1 46 0 471 193 27 4 chr6 73745101 73745334 -108669908 + (TA)n Simple_repeat Simple_repeat 1 238 0 216 160 40 0 chr6 73745404 73745454 -108669788 + (TA)n Simple_repeat Simple_repeat 1 52 0 290 265 60 8 chr6 73746162 73746279 -108668963 - Charlie8 DNA MER1_type -2242 175 53 184 309 44 105 chr6 73748269 73748450 -108666792 + L2 LINE L2 3015 3184 -88 341 364 45 8 chr6 73748723 73748855 -108666387 - L2 LINE L2 0 3272 3136 2173 70 7 0 chr6 73748880 73749166 -108666076 - L1PA7 LINE L1 -390 5764 5477 2742 74 3 5 chr6 73749167 73749534 -108665708 + L1PA7 LINE L1 5787 6152 -2 652 369 104 10 chr6 73749582 73750172 -108665070 - L2 LINE L2 -238 3075 2429 23 0 0 0 chr6 73750827 73750850 -108664392 + AT_rich Low_complexity Low_complexity 1 23 0 293 241 76 0 chr6 73750865 73750944 -108664298 + L1M4 LINE L1 4675 4759 -1387 1913 120 7 0 chr6 73750946 73751266 -108663976 + AluSq SINE Alu 1 322 0 1644 148 60 3 chr6 73751387 73751671 -108663571 + AluSg SINE Alu 1 300 -10 717 118 28 48 chr6 73751678 73752014 -108663228 + (TA)n Simple_repeat Simple_repeat 1 329 0 1500 249 200 43 chr6 73752673 73754263 -108660979 + L1MCc LINE L1 1122 2969 -3972 256 270 0 0 chr6 73754846 73754909 -108660333 - MIR SINE MIR -125 137 75 21 57 0 0 chr6 73754973 73755008 -108660234 + AT_rich Low_complexity Low_complexity 1 35 0 242 274 34 14 chr6 73755354 73755455 -108659787 + MIR SINE MIR 9 112 -112 311 254 152 14 chr6 73755947 73756085 -108659157 + L1PBb LINE L1 11 167 -6682 267 326 93 70 chr6 73756235 73756595 -108658647 + L1PBb LINE L1 549 920 -5929 5365 92 30 3 chr6 73756595 73757354 -108657888 + LTR17 LTR ERV1 1 780 0 267 326 93 70 chr6 73757354 73757392 -108657850 + L1PBb LINE L1 920 956 -5893 1923 105 20 7 chr6 73757641 73757935 -108657307 + AluY SINE Alu 1 298 -13 280 356 50 48 chr6 73758192 73758591 -108656651 + L1PA15-16 LINE L1 1164 1563 -5286 * 3554 244 50 23 chr6 73758577 73759558 -108655684 + L1PBb LINE L1 1335 2439 -4409 2373 71 3 0 chr6 73759558 73759867 -108655375 + AluY SINE Alu 1 310 -1 3554 244 50 23 chr6 73759867 73760113 -108655129 + L1PBb LINE L1 2439 2677 -4171 402 182 12 49 chr6 73760562 73760807 -108654435 + (TA)n Simple_repeat Simple_repeat 1 236 0 26 50 0 0 chr6 73761059 73761099 -108654143 + AT_rich Low_complexity Low_complexity 1 40 0 746 298 51 25 chr6 73761541 73762081 -108653161 + MLT2F LTR ERVL 3 599 -64 355 246 129 66 chr6 73762255 73762511 -108652731 + L1ME4a LINE L1 5605 5876 -245 21 82 0 0 chr6 73762777 73762826 -108652416 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr6 73762940 73762972 -108652270 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr6 73763127 73763155 -108652087 + AT_rich Low_complexity Low_complexity 1 28 0 186 67 67 0 chr6 73763926 73763971 -108651271 + (TA)n Simple_repeat Simple_repeat 1 48 0 29 0 0 0 chr6 73763972 73764001 -108651241 + AT_rich Low_complexity Low_complexity 1 29 0 213 111 0 48 chr6 73764001 73764064 -108651178 + (TTATA)n Simple_repeat Simple_repeat 4 63 0 525 79 91 22 chr6 73764080 73764490 -108650752 + (TA)n Simple_repeat Simple_repeat 1 438 0 30267 113 14 73 chr6 73764681 73765542 -108649700 - L1PA7 LINE L1 -5 6149 5239 517 103 23 0 chr6 73765542 73765629 -108649613 - Alu SINE Alu 0 312 224 30267 113 14 73 chr6 73765629 73771220 -108644022 - L1PA7 LINE L1 -915 5239 1 24 32 0 0 chr6 73772049 73772080 -108643162 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 73772546 73772567 -108642675 + AT_rich Low_complexity Low_complexity 1 21 0 335 278 92 35 chr6 73773248 73773475 -108641767 - L1M4 LINE L1 -2537 3609 3370 718 275 30 40 chr6 73773566 73773868 -108641374 - L1M4 LINE L1 -2050 4096 3798 252 217 85 57 chr6 73773873 73773979 -108641263 - L1M4 LINE L1 -2541 3605 3497 4881 231 53 45 chr6 73774366 73777144 -108638098 - L1PB3 LINE L1 -3 6151 4887 1643 187 52 19 chr6 73777168 73777531 -108637711 + THE1C LTR MaLR 1 375 0 9002 160 15 35 chr6 73777537 73778048 -108637194 + THE1C-int LTR MaLR 7 527 -1053 2658 67 3 0 chr6 73778048 73778393 -108636849 + L1PA7 LINE L1 5809 6154 0 9002 160 15 35 chr6 73778393 73779488 -108635754 + THE1C-int LTR MaLR 527 1580 0 1569 175 29 50 chr6 73779488 73779871 -108635371 + THE1C LTR MaLR 1 375 0 5351 222 17 8 chr6 73779871 73781177 -108634065 - L1PB3 LINE L1 -1279 4867 3551 263 357 49 54 chr6 73781417 73781602 -108633640 + L2 LINE L2 2881 3064 -208 688 332 82 27 chr6 73781777 73782181 -108633061 + MLT1H LTR MaLR 124 549 0 318 303 41 7 chr6 73782765 73782910 -108632332 + L1M4 LINE L1 4219 4368 -1778 521 305 60 65 chr6 73782914 73783560 -108631682 + L1M4 LINE L1 4489 5131 -1015 234 243 29 0 chr6 73783740 73783810 -108631432 + (TA)n Simple_repeat Simple_repeat 1 72 0 24 0 0 0 chr6 73783880 73783904 -108631338 + AT_rich Low_complexity Low_complexity 1 24 0 1311 211 73 52 chr6 73784260 73784700 -108630542 + L1MA9 LINE L1 5824 6272 -40 231 189 0 0 chr6 73784706 73784743 -108630499 + polypurine Low_complexity Low_complexity 4 40 0 500 177 28 14 chr6 73784743 73784884 -108630358 + GA-rich Low_complexity Low_complexity 3 145 0 2227 278 19 0 chr6 73786528 73787168 -108628074 + MLT1E1 LTR MaLR 3 654 0 22 35 0 0 chr6 73787273 73787302 -108627940 + AT_rich Low_complexity Low_complexity 1 29 0 201 138 0 0 chr6 73787379 73787408 -108627834 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 839 249 38 49 chr6 73788685 73789138 -108626104 + L1MC5 LINE L1 7464 7911 -50 1281 235 62 0 chr6 73789496 73789872 -108625370 + L1M4 LINE L1 5237 5634 -550 282 273 68 54 chr6 73789875 73790080 -108625162 - L1M4b LINE L1 -5910 949 742 444 209 115 7 chr6 73790090 73790229 -108625013 - L1M4b LINE L1 -6690 169 16 1940 135 0 3 chr6 73790446 73790734 -108624508 - AluSg SINE Alu -21 289 3 21 0 0 0 chr6 73792171 73792192 -108623050 + AT_rich Low_complexity Low_complexity 1 21 0 2024 187 9 0 chr6 73792229 73792566 -108622676 + Tigger7 DNA MER2_type 1 340 -2147 702 208 14 14 chr6 73792565 73792709 -108622533 + Tigger7 DNA MER2_type 2444 2587 0 * 30 69 0 0 chr6 73794190 73794248 -108620994 + AT_rich Low_complexity Low_complexity 1 58 0 1616 197 7 0 chr6 73794260 73794564 -108620678 + AluJb SINE Alu 3 308 -4 408 155 0 0 chr6 73794567 73794638 -108620604 + GA-rich Low_complexity Low_complexity 4 74 0 447 324 30 53 chr6 73795051 73795313 -108619929 - MLT1H LTR MaLR -269 280 25 4261 204 40 9 chr6 73795482 73796526 -108618716 + L1 LINE L1 4307 5383 -763 488 296 106 32 chr6 73796529 73796870 -108618372 - L1M4 LINE L1 -4883 1751 1442 25 31 0 0 chr6 73796871 73796903 -108618339 + AT_rich Low_complexity Low_complexity 1 32 0 2135 108 0 3 chr6 73797880 73798254 -108616988 + AluSq SINE Alu 1 373 0 3212 275 22 38 chr6 73798315 73798563 -108616679 + L1M4b LINE L1 22 273 -6586 235 0 57 0 chr6 73798563 73798598 -108616644 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1851 123 4 4 chr6 73798600 73798869 -108616373 - AluSx SINE Alu -32 280 12 3212 275 22 38 chr6 73798869 73799582 -108615660 + L1M4b LINE L1 274 970 -5889 646 259 3 10 chr6 73799582 73799870 -108615372 + MLT1A2 LTR MaLR 1 353 -21 36 82 0 0 chr6 73799973 73800058 -108615184 + AT_rich Low_complexity Low_complexity 1 85 0 599 201 14 22 chr6 73800073 73800212 -108615030 + L1M4b LINE L1 1035 1172 -5687 25 0 0 0 chr6 73800864 73800889 -108614353 + AT_rich Low_complexity Low_complexity 1 25 0 4626 100 15 3 chr6 73802522 73803202 -108612040 - L1PA10 LINE L1 -5 6163 5476 453 291 85 45 chr6 73803814 73804326 -108610916 + MLT1H1 LTR MaLR 24 555 0 7428 36 0 0 chr6 73805027 73805919 -108609323 - L1PA3 LINE L1 -5 6150 5259 4388 65 11 7 chr6 73806035 73806647 -108608595 - L1PA3 LINE L1 -1659 4487 3873 * 8375 127 20 27 chr6 73806638 73808225 -108607017 - L1P4 LINE L1 -672 5496 3922 387 297 116 57 chr6 73809228 73809666 -108605576 - L1M4 LINE L1 -6075 467 4 191 172 0 35 chr6 73809740 73809798 -108605444 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 23 33 0 0 chr6 73809810 73809840 -108605402 + AT_rich Low_complexity Low_complexity 1 30 0 26 74 0 0 chr6 73810778 73810832 -108604410 + AT_rich Low_complexity Low_complexity 1 54 0 12249 225 49 25 chr6 73811563 73814988 -108600254 - L1P3 LINE L1 -2312 4149 538 258 32 0 0 chr6 73814988 73815019 -108600223 + (CTGTG)n Simple_repeat Simple_repeat 1 31 0 12249 225 49 25 chr6 73815019 73815562 -108599680 - L1P3 LINE L1 -5923 538 10 22 35 0 0 chr6 73816609 73816638 -108598604 + AT_rich Low_complexity Low_complexity 1 29 0 1355 213 18 18 chr6 73816940 73817217 -108598025 - AluJo SINE Alu -35 277 1 510 130 0 0 chr6 73817251 73817328 -108597914 - AluSc SINE Alu -45 264 188 308 302 56 32 chr6 73817398 73817524 -108597718 + L1ME4a LINE L1 5836 5964 -157 185 91 0 30 chr6 73817529 73817562 -108597680 + (TA)n Simple_repeat Simple_repeat 1 32 0 10047 53 22 1 chr6 73817584 73819624 -108595618 - L1PA5 LINE L1 -15 6139 4068 257 49 0 0 chr6 73820236 73820277 -108594965 - L1PA6 LINE L1 0 6154 6114 476 310 0 0 chr6 73820277 73820406 -108594836 - MIR SINE MIR -130 132 4 2621 58 41 19 chr6 73821052 73821417 -108593825 - L1PA11 LINE L1 0 6174 5802 310 329 156 27 chr6 73821489 73821714 -108593528 - MIR SINE MIR -8 254 1 216 200 0 0 chr6 73822666 73822716 -108592526 + (CATA)n Simple_repeat Simple_repeat 2 51 0 787 319 89 27 chr6 73822945 73823676 -108591566 + MERVL LTR ERVL 3838 4675 -1089 6251 92 21 7 chr6 73823725 73824764 -108590478 - L1PA8 LINE L1 -11 6161 5109 258 266 26 53 chr6 73825617 73825730 -108589512 + MERVL LTR ERVL 5649 5758 -6 25 31 0 0 chr6 73826100 73826132 -108589110 + AT_rich Low_complexity Low_complexity 1 32 0 2829 233 45 14 chr6 73826205 73827442 -108587800 - L1MB4 LINE L1 -114 6066 4794 1450 213 22 12 chr6 73827442 73827762 -108587480 + MER2 DNA MER2_type 1 323 -22 3274 267 59 10 chr6 73827767 73829025 -108586217 - L1MB4 LINE L1 -1352 4794 3476 669 221 0 0 chr6 73829881 73830008 -108585234 + FLAM_C SINE Alu 1 127 -6 1051 163 74 0 chr6 73830038 73830228 -108585014 + MSTA LTR MaLR 225 428 0 459 0 0 0 chr6 73830922 73830973 -108584269 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1951 124 0 11 chr6 73830975 73831258 -108583984 - AluSx SINE Alu -32 280 1 1352 252 22 24 chr6 73831330 73831739 -108583503 - LTR52 LTR ERVL -4 417 10 28 48 0 0 chr6 73831777 73831819 -108583423 + AT_rich Low_complexity Low_complexity 1 42 0 401 305 158 12 chr6 73832224 73832388 -108582854 - MIR SINE MIR -26 236 49 23 33 0 0 chr6 73834383 73834413 -108580829 + AT_rich Low_complexity Low_complexity 1 30 0 600 204 74 34 chr6 73834441 73834617 -108580625 + L1MA9 LINE L1 6128 6310 -2 1873 108 4 8 chr6 73835330 73835590 -108579652 - AluY SINE Alu -16 295 37 242 301 41 61 chr6 73835808 73835838 -108579404 - L1PA10 LINE L1 -1 6167 6138 2774 203 34 58 chr6 73835838 73836165 -108579077 - L1PB4 LINE L1 -11 6145 5812 261 0 0 0 chr6 73836165 73836194 -108579048 + (TG)n Simple_repeat Simple_repeat 2 30 0 2774 203 34 58 chr6 73836194 73836295 -108578947 - L1PB4 LINE L1 -344 5812 5710 315 88 0 35 chr6 73836295 73836352 -108578890 - L1MA2 LINE L1 -2 6302 6248 2774 203 34 58 chr6 73836352 73836744 -108578498 - L1PB4 LINE L1 -446 5710 5344 230 298 53 20 chr6 73836791 73836942 -108578300 - L1M4 LINE L1 -1314 4832 4677 25 75 0 0 chr6 73836942 73836995 -108578247 + AT_rich Low_complexity Low_complexity 1 53 0 239 54 27 0 chr6 73837003 73837040 -108578202 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 803 229 116 52 chr6 73837042 73837405 -108577837 + LTR37A LTR ERV1 39 424 -2 689 283 30 13 chr6 73837944 73838174 -108577068 + L1MA9 LINE L1 6041 6274 -38 10664 224 28 29 chr6 73838305 73841727 -108573515 + L1PB4 LINE L1 2195 5609 -547 877 145 0 7 chr6 73841727 73841872 -108573370 + L1PA15 LINE L1 6015 6158 -7 10664 224 28 29 chr6 73841872 73842373 -108572869 + L1PB4 LINE L1 5609 6109 -47 2134 127 0 7 chr6 73842406 73842713 -108572529 + AluSx SINE Alu 1 305 -7 271 29 0 0 chr6 73842724 73842759 -108572483 - L1PB4 LINE L1 -15 6141 6107 196 274 41 14 chr6 73842822 73842895 -108572347 + MIR SINE MIR 109 183 -79 27 0 0 0 chr6 73843038 73843065 -108572177 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr6 73843778 73843804 -108571438 + AT_rich Low_complexity Low_complexity 1 26 0 603 352 64 46 chr6 73844024 73844955 -108570287 - HERVL LTR ERVL -548 5106 4159 2478 180 10 2 chr6 73845614 73846102 -108569140 - L1MA4 LINE L1 -15 6285 5794 180 0 0 0 chr6 73846102 73846122 -108569120 + (TG)n Simple_repeat Simple_repeat 1 20 0 22 111 0 0 chr6 73846124 73846223 -108569019 + AT_rich Low_complexity Low_complexity 1 99 0 439 336 37 34 chr6 73846457 73846725 -108568517 - HERVL LTR ERVL -2271 3214 2946 285 89 0 0 chr6 73847325 73847370 -108567872 + (TA)n Simple_repeat Simple_repeat 2 46 0 27 96 0 0 chr6 73847811 73847894 -108567348 + AT_rich Low_complexity Low_complexity 1 83 0 2742 123 65 0 chr6 73847942 73848330 -108566912 + MLT2A2 LTR ERVL 3 421 -32 730 67 37 0 chr6 73848330 73848465 -108566777 + (TA)n Simple_repeat Simple_repeat 2 141 0 2742 123 65 0 chr6 73848465 73848490 -108566752 + MLT2A2 LTR ERVL 421 443 -10 254 191 34 11 chr6 73848490 73848579 -108566663 + (TA)n Simple_repeat Simple_repeat 1 91 0 280 118 39 0 chr6 73848580 73848631 -108566611 + MLT2A1 LTR ERVL 390 442 -2 207 0 0 0 chr6 73848912 73848935 -108566307 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5515 35 9 0 chr6 73848944 73849609 -108565633 - L1PA3 LINE L1 -3 6152 5482 10591 34 4 1 chr6 73849609 73850920 -108564322 + L1P LINE L1 1908 3222 -2924 27 62 0 0 chr6 73852206 73852254 -108562988 + AT_rich Low_complexity Low_complexity 1 48 0 24 77 0 0 chr6 73852294 73852346 -108562896 + AT_rich Low_complexity Low_complexity 1 52 0 455 233 34 0 chr6 73852430 73852576 -108562666 + L1ME2 LINE L1 4246 4396 -1750 2334 304 34 37 chr6 73852587 73853393 -108561849 + L1PA13 LINE L1 1 803 -5984 9435 247 21 32 chr6 73853555 73853825 -108561417 + L1PA13 LINE L1 1284 1555 -5242 2110 160 14 11 chr6 73853825 73854188 -108561054 - THE1B LTR MaLR 0 364 1 9435 247 21 32 chr6 73854188 73857540 -108557702 + L1PA13 LINE L1 1555 4888 -1909 510 234 2 1 chr6 73857539 73857657 -108557585 - L1M4 LINE L1 -1492 4654 4536 * 2120 261 84 31 chr6 73857903 73859082 -108556160 + L1ME2 LINE L1 4803 6048 -116 684 306 99 0 chr6 73859271 73859656 -108555586 - L1M4 LINE L1 -1198 4948 4526 559 168 32 10 chr6 73859766 73859880 -108555362 - MLT1D LTR MaLR -3 502 400 1006 246 0 44 chr6 73859885 73860133 -108555109 - MLT1D LTR MaLR -268 237 1 238 417 20 13 chr6 73860235 73860386 -108554856 - L2 LINE L2 -556 2758 2607 899 178 12 6 chr6 73862109 73862278 -108552964 - AluSg/x SINE Alu -3 307 138 1303 226 40 3 chr6 73862288 73862665 -108552577 - L1M4 LINE L1 -2900 3246 2856 * 5381 164 39 6 chr6 73862663 73864170 -108551072 + L1MA4 LINE L1 4722 6280 -20 1828 169 27 21 chr6 73864491 73864864 -108550378 + THE1C LTR MaLR 1 375 0 25 51 0 0 chr6 73865165 73865204 -108550038 + AT_rich Low_complexity Low_complexity 1 39 0 606 61 85 6 chr6 73866067 73866232 -108549010 + (TA)n Simple_repeat Simple_repeat 1 178 0 302 175 70 21 chr6 73916237 73916380 -108498862 + (TA)n Simple_repeat Simple_repeat 1 150 0 206 84 56 70 chr6 73916381 73916452 -108498790 + (TTAA)n Simple_repeat Simple_repeat 1 70 0 195 103 35 17 chr6 73916452 73916510 -108498732 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 326 242 16 94 chr6 73916665 73916793 -108498449 + L1MC4 LINE L1 6586 6703 -1339 21 0 0 0 chr6 73916799 73916820 -108498422 + AT_rich Low_complexity Low_complexity 1 21 0 605 312 6 12 chr6 73917115 73917288 -108497954 - MER82 DNA MER2_type -1 652 481 465 202 39 0 chr6 73917392 73917496 -108497746 + Tigger6b DNA MER2_type 8 115 -1482 1079 168 5 0 chr6 73917497 73917699 -108497543 - L1MA9 LINE L1 0 6312 6110 475 250 10 0 chr6 73917705 73917809 -108497433 + MER8 DNA MER2_type 7 111 -128 2166 225 38 9 chr6 73917889 73918422 -108496820 - L1MA9 LINE L1 -200 6112 5565 354 275 106 14 chr6 73918424 73918566 -108496676 + L1 LINE L1 3001 3155 -2991 910 137 0 0 chr6 73918578 73918709 -108496533 + AluSg SINE Alu 1 131 -179 3034 229 18 4 chr6 73918730 73919451 -108495791 + L1 LINE L1 3164 3894 -2252 3194 247 17 16 chr6 73919451 73920260 -108494982 + Tigger6b DNA MER2_type 104 913 -684 1243 171 86 120 chr6 73920251 73920777 -108494465 + Tigger6b DNA MER2_type 1083 1590 -7 * 182 91 30 0 chr6 73921186 73921219 -108494023 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 243 321 19 19 chr6 73923133 73923239 -108492003 + L1ME3A LINE L1 6035 6140 -30 24 0 0 0 chr6 73923698 73923722 -108491520 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 73923810 73923832 -108491410 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr6 73924060 73924096 -108491146 + AT_rich Low_complexity Low_complexity 1 36 0 1878 142 84 29 chr6 73924324 73924669 -108490573 + THE1B LTR MaLR 1 364 0 5972 108 4 1 chr6 73924670 73925504 -108489738 + THE1B-int LTR MaLR 2 837 -743 220 289 44 26 chr6 73926683 73926797 -108488445 - MIR SINE MIR -63 199 84 24 53 0 0 chr6 73927683 73927721 -108487521 + AT_rich Low_complexity Low_complexity 1 38 0 796 264 11 0 chr6 73928362 73928544 -108486698 + AluJo SINE Alu 98 281 -31 552 237 82 36 chr6 73928785 73928979 -108486263 - MER82 DNA MER2_type -432 221 19 264 196 0 0 chr6 73929000 73929056 -108486186 - L1MC4 LINE L1 -1339 6703 6648 303 287 126 84 chr6 73929247 73929725 -108485517 + L1ME4a LINE L1 5613 6110 -11 1295 224 68 34 chr6 73929933 73930316 -108484926 + MSTD LTR MaLR 1 396 0 28 29 0 0 chr6 73930404 73930439 -108484803 + AT_rich Low_complexity Low_complexity 1 35 0 348 263 40 0 chr6 73931059 73931135 -108484107 - MIR SINE MIR -6 256 178 2427 219 85 40 chr6 73931171 73932560 -108482682 - L1MA9 LINE L1 -1 6311 4850 3454 219 28 18 chr6 73932585 73933436 -108481806 + L1 LINE L1 3253 4112 -2034 507 318 69 31 chr6 73934763 73935052 -108480190 + L1M4 LINE L1 107 406 -6136 1078 141 0 6 chr6 73935054 73935224 -108480018 - AluSc SINE Alu -21 288 120 452 108 14 14 chr6 73935226 73935300 -108479942 - AluJ/FLAM SINE Alu -228 84 11 1675 263 71 65 chr6 73935311 73936314 -108478928 + L1M4 LINE L1 400 1408 -5134 994 257 16 8 chr6 73936317 73936570 -108478672 + L1MD3 LINE L1 6685 6939 -1056 900 306 67 3 chr6 73937199 73937526 -108477716 + LTR16C LTR ERVL 136 483 -8 248 301 112 56 chr6 73937708 73937904 -108477338 - L2 LINE L2 -10 3303 3097 701 273 31 4 chr6 73939124 73939380 -108475862 - L1MD3 LINE L1 -5 7990 7728 4832 237 35 34 chr6 73939990 73942157 -108473085 - L1MC1 LINE L1 -7 6606 4437 4060 196 49 1 chr6 73942196 73943253 -108471989 - L1PB4 LINE L1 -18 6138 5024 1011 175 0 0 chr6 73943253 73943413 -108471829 + LTR8 LTR ERV1 526 685 -6 14390 192 72 82 chr6 73943419 73945432 -108469810 + HUERS-P1 LTR ERV1 1 2033 -4230 1043 71 0 22 chr6 73945432 73945616 -108469626 + (TA)n Simple_repeat Simple_repeat 1 180 0 14390 192 72 82 chr6 73945616 73945884 -108469358 + HUERS-P1 LTR ERV1 2033 2302 -3961 342 80 0 0 chr6 73945884 73945934 -108469308 + (CA)n Simple_repeat Simple_repeat 2 51 0 14390 192 72 82 chr6 73945934 73946743 -108468499 + HUERS-P1 LTR ERV1 2302 3118 -3145 396 0 0 0 chr6 73946743 73946787 -108468455 + (TG)n Simple_repeat Simple_repeat 1 44 0 14390 192 72 82 chr6 73946787 73948065 -108467177 + HUERS-P1 LTR ERV1 3118 4408 -1855 2153 84 4 0 chr6 73948065 73948386 -108466856 - AluSc SINE Alu 0 326 5 14390 192 72 82 chr6 73948386 73950188 -108465054 + HUERS-P1 LTR ERV1 4408 6263 0 2592 178 38 78 chr6 73950188 73950908 -108464334 + LTR8 LTR ERV1 1 691 0 1026 337 42 0 chr6 73950922 73951275 -108463967 - L1M2 LINE L1 -6475 374 7 4093 283 56 4 chr6 73951311 73953008 -108462234 - L1MC1 LINE L1 -2018 4408 2624 1859 198 81 60 chr6 73953089 73953927 -108461315 - L1MC1 LINE L1 -4027 2399 1452 * 6753 32 4 0 chr6 73953902 73954710 -108460532 - L1PA4 LINE L1 -2 6433 5623 441 71 0 0 chr6 73954710 73954766 -108460476 + L1P LINE L1 4542 4597 -1549 709 174 31 132 chr6 73954766 73955054 -108460188 - L1MC1 LINE L1 -4940 1486 1228 534 179 49 16 chr6 73955080 73955203 -108460039 - L1MC1 LINE L1 -5334 1092 966 23 54 0 0 chr6 73955439 73955476 -108459766 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 73955500 73955537 -108459705 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr6 73956123 73956150 -108459092 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr6 73956521 73956550 -108458692 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr6 73957592 73957631 -108457611 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 73957661 73957682 -108457560 + AT_rich Low_complexity Low_complexity 1 21 0 1509 180 3 24 chr6 73958452 73958746 -108456496 + AluJo SINE Alu 25 312 0 39 38 0 0 chr6 73960016 73960069 -108455173 + AT_rich Low_complexity Low_complexity 1 53 0 29037 137 11 48 chr6 73960462 73966849 -108448393 - L1PA7 LINE L1 -5 6149 12 25 51 0 0 chr6 73966929 73966968 -108448274 + AT_rich Low_complexity Low_complexity 1 39 0 351 316 83 0 chr6 73967807 73967940 -108447302 - MIR SINE MIR -17 245 102 1086 291 85 23 chr6 73968089 73968570 -108446672 - LTR40a LTR ERVL -2 517 7 1227 244 35 7 chr6 73968591 73968874 -108446368 - AluJo SINE Alu -8 294 4 22 0 0 0 chr6 73968997 73969019 -108446223 + AT_rich Low_complexity Low_complexity 1 22 0 759 247 12 6 chr6 73969936 73970102 -108445140 - AluJo SINE Alu -145 167 1 240 404 40 9 chr6 73970513 73970741 -108444501 + MIR SINE MIR 25 259 -3 21 0 0 0 chr6 73971428 73971449 -108443793 + AT_rich Low_complexity Low_complexity 1 21 0 316 261 18 27 chr6 73971498 73971609 -108443633 + L1MEc LINE L1 1646 1755 -4641 529 315 51 64 chr6 73971680 73972131 -108443111 + L1MEc LINE L1 1893 2337 -4059 1268 246 50 89 chr6 73972131 73972748 -108442494 + MLT1E LTR MaLR 1 593 0 1858 98 0 0 chr6 73972772 73973037 -108442205 - L1P LINE L1 -1131 5015 4751 6705 66 14 5 chr6 73973037 73974135 -108441107 + L1PA7 LINE L1 5049 6154 0 422 298 108 37 chr6 73974151 73975011 -108440231 + L1MEc LINE L1 2315 3235 -2980 23 0 0 0 chr6 73975129 73975152 -108440090 + AT_rich Low_complexity Low_complexity 1 23 0 279 254 0 0 chr6 73975548 73975619 -108439623 + (TA)n Simple_repeat Simple_repeat 2 72 0 21 57 0 0 chr6 73976342 73976377 -108438865 + AT_rich Low_complexity Low_complexity 1 35 0 1124 191 59 95 chr6 73976502 73976890 -108438352 + MLT1A2 LTR MaLR 1 374 0 237 383 9 0 chr6 73977321 73977436 -108437806 - L2 LINE L2 0 3313 3198 786 242 5 15 chr6 73977442 73977640 -108437602 + MLT1B LTR MaLR 3 198 -192 28 0 0 0 chr6 73978171 73978199 -108437043 + AT_rich Low_complexity Low_complexity 1 28 0 3800 80 0 12 chr6 73978213 73978727 -108436515 + L1PA7 LINE L1 5636 6143 -11 239 246 80 91 chr6 73979266 73979465 -108435777 + MLT1H LTR MaLR 95 291 -258 406 309 51 88 chr6 73979694 73980105 -108435137 + MLT1J LTR MaLR 30 425 -86 230 242 16 65 chr6 73980261 73980323 -108434919 - L2 LINE L2 -9 3304 3246 182 173 19 58 chr6 73980696 73980748 -108434494 - L2 LINE L2 -963 2351 2302 344 195 26 26 chr6 73980907 73981044 -108434198 + GA-rich Low_complexity Low_complexity 1 137 0 267 300 25 0 chr6 73981149 73981229 -108434013 - L2 LINE L2 -5 3308 3227 21 0 0 0 chr6 73981663 73981684 -108433558 + AT_rich Low_complexity Low_complexity 1 21 0 449 336 63 56 chr6 73981780 73982176 -108433066 - MLT1J2 LTR MaLR -29 421 23 25 0 0 0 chr6 73982181 73982206 -108433036 + AT_rich Low_complexity Low_complexity 1 25 0 319 338 53 2 chr6 73982287 73982518 -108432724 - HERVL LTR ERVL -3326 2328 2128 23 33 0 0 chr6 73982946 73982976 -108432266 + AT_rich Low_complexity Low_complexity 1 30 0 2404 53 33 0 chr6 73983268 73983568 -108431674 - AluY SINE Alu 0 311 2 22 35 0 0 chr6 73986182 73986211 -108429031 + AT_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr6 73986860 73986910 -108428332 + AT_rich Low_complexity Low_complexity 1 50 0 1598 175 3 3 chr6 73986910 73987201 -108428041 + L1P LINE L1 4433 4723 -1423 2425 166 4 37 chr6 73987201 73987665 -108427577 - LTR1 LTR ERV1 0 785 337 304 257 89 40 chr6 73987777 73987979 -108427263 + L1MD3 LINE L1 7007 7218 -777 438 108 0 0 chr6 73987979 73988044 -108427198 + (TA)n Simple_repeat Simple_repeat 1 65 0 331 282 48 0 chr6 73988044 73988147 -108427095 + MLT1F1 LTR MaLR 16 123 -444 609 269 129 0 chr6 73988148 73988349 -108426893 + L1MD3 LINE L1 7403 7629 -366 1327 257 101 10 chr6 73988349 73988863 -108426379 - Charlie1a DNA MER1_type -849 606 46 23 86 0 0 chr6 73989018 73989076 -108426166 + AT_rich Low_complexity Low_complexity 1 58 0 250 238 0 0 chr6 73989213 73989276 -108425966 + L1MC4 LINE L1 6641 6703 -1339 1355 158 41 0 chr6 73989791 73990012 -108425230 + MER30 DNA MER1_type 1 230 0 251 172 35 11 chr6 73990022 73990098 -108425144 + (TA)n Simple_repeat Simple_repeat 1 81 -8 996 9 0 0 chr6 73990098 73990212 -108425030 - L1PA2 LINE L1 -5 6150 6037 251 172 35 11 chr6 73990212 73990222 -108425020 + (TA)n Simple_repeat Simple_repeat 81 89 0 883 210 55 21 chr6 73990231 73990469 -108424773 - THE1C LTR MaLR -129 246 1 22 0 0 0 chr6 73991291 73991313 -108423929 + AT_rich Low_complexity Low_complexity 1 22 0 906 281 113 40 chr6 73992282 73992788 -108422454 + MLT1H LTR MaLR 3 545 -4 33 0 0 0 chr6 73993195 73993228 -108422014 + AT_rich Low_complexity Low_complexity 1 33 0 1307 87 34 53 chr6 73993751 73993957 -108421285 + AluSg/x SINE Alu 81 282 -30 249 33 0 0 chr6 73993964 73993994 -108421248 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 32 26 0 0 chr6 73994076 73994115 -108421127 + AT_rich Low_complexity Low_complexity 1 39 0 339 334 78 86 chr6 73995287 73995416 -108419826 + L2 LINE L2 2598 2727 -545 748 239 53 10 chr6 73995416 73995625 -108419617 - MER20 DNA MER1_type 0 219 2 339 334 78 86 chr6 73995625 73996174 -108419068 + L2 LINE L2 2727 3272 0 636 325 120 8 chr6 73997840 73998240 -108417002 + LTR16C LTR ERVL 36 480 -11 243 146 0 0 chr6 73999278 73999319 -108415923 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 74000137 74000158 -108415084 + AT_rich Low_complexity Low_complexity 1 21 0 1124 247 13 53 chr6 74001438 74001818 -108413424 - MLT1A1 LTR MaLR 0 365 1 243 0 0 0 chr6 74002504 74002531 -108412711 + (CAA)n Simple_repeat Simple_repeat 1 27 0 191 279 58 35 chr6 74003320 74003406 -108411836 + L2 LINE L2 2152 2239 -1075 743 172 166 0 chr6 74003800 74003951 -108411291 + MSTA LTR MaLR 19 194 -234 4606 71 19 15 chr6 74003951 74004983 -108410259 - MER11A LTR ERVK 0 1266 1 1496 130 4 36 chr6 74004984 74005231 -108410011 + MSTA LTR MaLR 190 428 0 233 259 74 0 chr6 74005877 74005958 -108409284 - MER103 DNA DNA -52 114 28 537 291 32 8 chr6 74006378 74006573 -108408669 + L1ME3 LINE L1 5518 5709 -461 302 303 290 7 chr6 74006798 74006943 -108408299 - MER5A DNA MER1_type 0 189 4 21 36 0 0 chr6 74007448 74007476 -108407766 + AT_rich Low_complexity Low_complexity 1 28 0 6535 75 24 0 chr6 74007579 74009204 -108406038 + L1PA7 LINE L1 4508 6154 0 267 320 68 0 chr6 74009263 74009366 -108405876 + L1ME3 LINE L1 5974 6083 -79 228 309 167 36 chr6 74009492 74009660 -108405582 - MIR SINE MIR -72 190 1 28 0 0 0 chr6 74009681 74009709 -108405533 + AT_rich Low_complexity Low_complexity 1 28 0 226 320 40 70 chr6 74009723 74009823 -108405419 + L2 LINE L2 3169 3265 -7 213 175 25 38 chr6 74009855 74009935 -108405307 + (TTA)n Simple_repeat Simple_repeat 2 80 0 28 29 0 0 chr6 74009989 74010024 -108405218 + AT_rich Low_complexity Low_complexity 1 35 0 654 279 108 35 chr6 74010586 74010984 -108404258 - L1ME1 LINE L1 -5 6161 5735 26 30 0 0 chr6 74011011 74011044 -108404198 + AT_rich Low_complexity Low_complexity 1 33 0 415 340 56 64 chr6 74011089 74011463 -108403779 - L2 LINE L2 -2 3311 2941 318 331 135 59 chr6 74011636 74012125 -108403117 - L2 LINE L2 -574 2740 2215 203 301 108 0 chr6 74012290 74012373 -108402869 - L2 LINE L2 -1413 1901 1810 423 354 26 10 chr6 74012395 74012590 -108402652 - L2 LINE L2 -1635 1679 1482 29 0 0 0 chr6 74012590 74012619 -108402623 + AT_rich Low_complexity Low_complexity 1 29 0 2341 69 23 0 chr6 74012749 74013054 -108402188 + AluSp SINE Alu 1 312 -1 545 148 0 0 chr6 74013178 74013266 -108401976 - 5S rRNA rRNA -31 90 3 1722 153 0 14 chr6 74013762 74014096 -108401146 - AluSx SINE Alu 0 330 1 836 196 289 0 chr6 74014180 74014405 -108400837 + AluJo SINE Alu 1 290 -12 22 70 0 0 chr6 74014913 74014956 -108400286 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr6 74014986 74015015 -108400227 + AT_rich Low_complexity Low_complexity 1 29 0 9639 45 6 0 chr6 74015073 74017037 -108398205 + L1PA5 LINE L1 4183 6145 -9 22 0 0 0 chr6 74017037 74017059 -108398183 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 74017175 74017198 -108398044 + AT_rich Low_complexity Low_complexity 1 23 0 182 380 76 44 chr6 74018258 74018416 -108396826 + L2 LINE L2 3048 3210 -62 213 336 73 35 chr6 74019726 74019958 -108395284 + L2 LINE L2 1731 1971 -1343 25 31 0 0 chr6 74020279 74020311 -108394931 + AT_rich Low_complexity Low_complexity 1 32 0 326 338 86 7 chr6 74020500 74020651 -108394591 + L2 LINE L2 2199 2361 -953 1004 222 26 119 chr6 74021645 74022032 -108393210 + MLT1A2 LTR MaLR 11 361 -13 372 287 10 0 chr6 74022777 74022878 -108392364 - MER74C LTR ERVL -349 111 10 22 70 0 0 chr6 74023211 74023254 -108391988 + AT_rich Low_complexity Low_complexity 1 43 0 347 355 55 22 chr6 74025127 74025310 -108389932 + MIR SINE MIR 13 201 -61 197 333 13 0 chr6 74025954 74026032 -108389210 - MIR SINE MIR -116 146 68 281 279 36 27 chr6 74026226 74026337 -108388905 - MER94 DNA DNA -22 112 1 2217 72 0 24 chr6 74026398 74026691 -108388551 + AluY SINE Alu 1 286 -25 3637 28 0 0 chr6 74026691 74027124 -108388118 + L1PA4 LINE L1 5720 6152 -3 207 0 0 0 chr6 74028030 74028053 -108387189 + (CA)n Simple_repeat Simple_repeat 2 24 0 264 149 0 0 chr6 74028435 74028482 -108386760 + (TCC)n Simple_repeat Simple_repeat 3 49 0 1865 108 0 0 chr6 74028487 74028736 -108386506 - AluSx SINE Alu -53 259 11 343 294 87 40 chr6 74028743 74029018 -108386224 + L1ME LINE L1 655 942 -5128 1098 270 50 60 chr6 74029209 74030110 -108385132 + L1M4 LINE L1 4157 5048 -1098 413 298 159 23 chr6 74030143 74030489 -108384753 + L1MCc LINE L1 51 443 -5980 853 317 57 7 chr6 74030799 74031219 -108384023 + L1MCc LINE L1 1035 1475 -4948 * 9880 50 1 1 chr6 74031217 74032484 -108382758 - L1PA5 LINE L1 -2425 3721 2455 13286 50 2 2 chr6 74032484 74034927 -108380315 + L1PA5 LINE L1 3715 6150 -4 778 251 65 55 chr6 74034928 74035470 -108379772 + L1MCc LINE L1 1469 2015 -4926 1049 267 139 29 chr6 74035645 74036098 -108379144 + MLT1D LTR MaLR 1 503 -2 331 313 69 12 chr6 74036101 74036261 -108378981 + L1MCc LINE L1 2423 2591 -4531 722 292 61 22 chr6 74036450 74036909 -108378333 + L1MCc LINE L1 2926 3402 -3539 4417 147 36 19 chr6 74036912 74037695 -108377547 + L1PA13 LINE L1 5368 6163 0 2554 279 77 17 chr6 74037690 74039030 -108376212 + L1MCc LINE L1 3391 4810 -2131 * 326 193 0 91 chr6 74039075 74039163 -108376079 - L1ME LINE L1 -571 5595 5516 201 317 0 0 chr6 74040038 74040098 -108375144 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 362 308 239 32 chr6 74041567 74042115 -108373127 - L2 LINE L2 0 3313 2600 877 284 76 32 chr6 74042271 74042641 -108372601 - L2 LINE L2 -744 2570 2185 523 266 31 8 chr6 74042666 74042794 -108372448 - MER5B DNA MER1_type -3 175 45 2546 148 5 5 chr6 74043409 74043843 -108371399 - L1PA14 LINE L1 -13 6148 5715 424 86 29 0 chr6 74044023 74044093 -108371149 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 267 244 21 160 chr6 74045572 74045810 -108369432 - MIR SINE MIR -1 261 57 350 287 0 52 chr6 74046147 74046283 -108368959 + L1MC4 LINE L1 6599 6727 -1315 267 31 0 0 chr6 74046541 74046573 -108368669 + (CA)n Simple_repeat Simple_repeat 1 32 0 511 281 176 14 chr6 74046700 74046921 -108368321 + MIR SINE MIR 6 262 0 217 313 0 15 chr6 74046995 74047062 -108368180 + MIR SINE MIR 166 231 -31 26 50 0 0 chr6 74048082 74048122 -108367120 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr6 74048324 74048349 -108366893 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr6 74049251 74049286 -108365956 + AT_rich Low_complexity Low_complexity 1 35 0 2270 197 13 11 chr6 74049595 74050051 -108365191 + Tigger1 DNA MER2_type 1 457 -1961 1408 107 19 0 chr6 74050061 74050266 -108364976 + AluSg/x SINE Alu 104 312 0 670 79 10 20 chr6 74050268 74050369 -108364873 + Tigger1 DNA MER2_type 817 916 -1502 1049 208 26 0 chr6 74050595 74050821 -108364421 + Tigger1 DNA MER2_type 2187 2418 0 2439 118 6 3 chr6 74051087 74051450 -108363792 - THE1B LTR MaLR 0 364 1 9806 124 20 31 chr6 74051450 74053047 -108362195 - THE1B-int LTR MaLR 0 1580 1 2609 110 0 0 chr6 74053049 74053405 -108361837 - THE1B LTR MaLR -8 356 1 2011 198 21 37 chr6 74054164 74054594 -108360648 - MSTC LTR MaLR 0 428 6 591 197 24 24 chr6 74055434 74055561 -108359681 + FRAM SINE Alu 20 146 -30 330 45 0 0 chr6 74055562 74055606 -108359636 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2292 42 21 7 chr6 74056688 74056974 -108358268 - AluY SINE Alu -20 291 2 674 170 0 0 chr6 74057370 74057505 -108357737 - AluJb SINE Alu 0 306 172 1467 194 11 11 chr6 74057609 74057888 -108357354 - LTR1 LTR ERV1 -506 279 1 15301 167 33 35 chr6 74057888 74060179 -108355063 - HUERS-P2 LTR ERV1 0 3088 801 4636 68 3 2 chr6 74060179 74060780 -108354462 + L1PA7 LINE L1 5553 6154 0 15301 167 33 35 chr6 74060780 74061362 -108353880 - HUERS-P2 LTR ERV1 -2287 801 220 2140 166 122 14 chr6 74061524 74062356 -108352886 + L1PA11 LINE L1 4715 5649 -525 3138 115 55 0 chr6 74062457 74062952 -108352290 + L1PA11 LINE L1 5651 6172 -2 214 191 0 0 chr6 74062961 74063003 -108352239 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2359 79 0 0 chr6 74063481 74063772 -108351470 - AluY SINE Alu -16 295 5 870 206 79 21 chr6 74064430 74064619 -108350623 + THE1B LTR MaLR 1 200 -164 7150 129 7 7 chr6 74064763 74065825 -108349417 + THE1B-int LTR MaLR 494 1555 -25 1965 149 52 23 chr6 74065825 74066173 -108349069 + THE1B LTR MaLR 7 364 0 23 54 0 0 chr6 74066496 74066533 -108348709 + AT_rich Low_complexity Low_complexity 1 37 0 375 281 135 21 chr6 74066592 74066784 -108348458 + L1ME LINE L1 5514 5727 -457 186 71 0 0 chr6 74066837 74066865 -108348377 + (TA)n Simple_repeat Simple_repeat 1 28 0 25 95 0 0 chr6 74066875 74066949 -108348293 + AT_rich Low_complexity Low_complexity 1 74 0 1067 160 5 41 chr6 74067326 74067520 -108347722 - LTR59 LTR ERV1 -6 591 405 538 312 88 10 chr6 74067748 74068056 -108347186 + L1MCc LINE L1 1141 1472 -4951 398 360 62 4 chr6 74068084 74068342 -108346900 - L1ME3 LINE L1 -79 6083 5811 233 229 0 0 chr6 74068976 74069024 -108346218 - MLT2D LTR ERVL 0 414 367 192 109 36 18 chr6 74069024 74069079 -108346163 + (TG)n Simple_repeat Simple_repeat 2 57 0 597 91 0 0 chr6 74069140 74069217 -108346025 - AluSp SINE Alu -121 192 116 1579 171 81 31 chr6 74069598 74069955 -108345287 + THE1C LTR MaLR 1 375 0 7576 147 62 58 chr6 74069955 74071429 -108343813 + THE1C-int LTR MaLR 1 1480 -100 3330 114 29 39 chr6 74071529 74071874 -108343368 + MER41-int LTR ERV1 4474 4812 -1134 666 135 29 0 chr6 74071874 74071978 -108343264 + U6 snRNA snRNA 1 107 0 3330 114 29 39 chr6 74071978 74072191 -108343051 + MER41-int LTR ERV1 4812 5026 -920 1274 150 31 18 chr6 74072233 74072460 -108342782 + MER41-int LTR ERV1 5554 5783 -1422 195 42 0 0 chr6 74072478 74072502 -108342740 + (GA)n Simple_repeat Simple_repeat 1 24 0 264 171 69 40 chr6 74072843 74073018 -108342224 + (TA)n Simple_repeat Simple_repeat 1 180 0 5258 192 10 5 chr6 74073099 74074421 -108340821 - L1MA3 LINE L1 0 7724 6399 2267 217 30 41 chr6 74074408 74075174 -108340068 - L1MA3 LINE L1 -3370 4195 3423 * 2845 44 0 0 chr6 74075189 74075530 -108339712 - L1P LINE L1 -1874 4272 3932 601 91 0 0 chr6 74075530 74075618 -108339624 - AluY SINE Alu -8 303 216 1308 167 41 0 chr6 74075718 74075988 -108339254 - L1MA3 LINE L1 -4839 2726 2446 * 29782 121 12 57 chr6 74075972 74082408 -108332834 - L1PA7 LINE L1 -7 6147 9 3984 254 44 31 chr6 74082417 74083374 -108331868 - L1MA3 LINE L1 -5099 2466 1523 2129 108 0 3 chr6 74083374 74083661 -108331581 + AluSp SINE Alu 1 286 -27 3984 254 44 31 chr6 74083661 74084445 -108330797 - L1MA3 LINE L1 -6042 1523 11 23 33 0 0 chr6 74085040 74085070 -108330172 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 74085202 74085238 -108330004 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 74085547 74085568 -108329674 + AT_rich Low_complexity Low_complexity 1 21 0 684 307 63 20 chr6 74085786 74086089 -108329153 + Charlie2 DNA MER1_type 3 318 -2544 1722 146 30 14 chr6 74086188 74086483 -108328759 + AluSq SINE Alu 1 300 -13 2069 120 10 7 chr6 74086532 74086840 -108328402 - AluSg SINE Alu -1 309 1 326 313 126 52 chr6 74086844 74087174 -108328068 - L1 LINE L1 -2136 4010 3656 216 0 0 0 chr6 74087597 74087621 -108327621 + (A)n Simple_repeat Simple_repeat 1 24 0 26 88 0 0 chr6 74087711 74087779 -108327463 + AT_rich Low_complexity Low_complexity 1 68 0 25 51 0 0 chr6 74088072 74088111 -108327131 + AT_rich Low_complexity Low_complexity 1 39 0 288 319 118 8 chr6 74088595 74088714 -108326528 + L2 LINE L2 2913 3044 -269 43 20 0 0 chr6 74088745 74088795 -108326447 + AT_rich Low_complexity Low_complexity 1 50 0 267 349 179 5 chr6 74088896 74089091 -108326151 + L2 LINE L2 3080 3308 -5 28 48 0 0 chr6 74089220 74089262 -108325980 + AT_rich Low_complexity Low_complexity 1 42 0 1616 101 26 26 chr6 74089262 74089529 -108325713 - L1MA1 LINE L1 0 6302 6036 2097 94 10 13 chr6 74089737 74090036 -108325206 + AluY SINE Alu 1 298 -13 23 0 0 0 chr6 74090712 74090735 -108324507 + AT_rich Low_complexity Low_complexity 1 23 0 303 323 54 63 chr6 74090831 74091181 -108324061 + L1MEc LINE L1 23 369 -6027 331 345 21 7 chr6 74091549 74091691 -108323551 + L1MEc LINE L1 785 928 -5468 547 250 0 0 chr6 74091820 74091964 -108323278 + L1MEc LINE L1 2671 2814 -3401 353 302 135 24 chr6 74091971 74092601 -108322641 + L1ME1 LINE L1 994 1693 -4703 1266 303 101 8 chr6 74092614 74093776 -108321466 + L1ME1 LINE L1 1807 3039 -3176 1683 279 106 25 chr6 74093829 74095019 -108320223 + L1ME1 LINE L1 4173 5627 -608 1781 194 27 0 chr6 74095019 74095355 -108319887 - MER7A DNA MER2_type 0 346 4 1683 279 106 25 chr6 74095355 74095689 -108319553 + L1ME1 LINE L1 5627 5933 -302 2590 35 3 0 chr6 74095953 74096263 -108318979 - AluY SINE Alu 0 311 1 21 0 0 0 chr6 74096634 74096655 -108318587 + AT_rich Low_complexity Low_complexity 1 21 0 193 402 103 0 chr6 74097510 74097597 -108317645 + L2 LINE L2 3144 3239 -33 1876 172 35 30 chr6 74098053 74098448 -108316794 - Tigger2a DNA MER2_type -37 397 1 954 236 76 32 chr6 74098523 74098837 -108316405 - MLT1A2 LTR MaLR -46 328 1 23 33 0 0 chr6 74099254 74099284 -108315958 + AT_rich Low_complexity Low_complexity 1 30 0 217 135 92 7 chr6 74100892 74101033 -108314209 + (TA)n Simple_repeat Simple_repeat 2 154 0 288 211 54 14 chr6 74101046 74101193 -108314049 + (TA)n Simple_repeat Simple_repeat 2 154 0 21 71 0 0 chr6 74101355 74101397 -108313845 + AT_rich Low_complexity Low_complexity 1 42 0 30 0 0 0 chr6 74101648 74101678 -108313564 + AT_rich Low_complexity Low_complexity 1 30 0 1981 148 72 17 chr6 74101702 74102047 -108313195 + THE1B LTR MaLR 1 364 0 8202 106 19 1 chr6 74102047 74103201 -108312041 + THE1B-int LTR MaLR 1 1175 -405 2316 245 89 7 chr6 74103203 74103933 -108311309 - L1MC2 LINE L1 -237 6387 5598 248 169 46 0 chr6 74103928 74103993 -108311249 - L1PA15 LINE L1 0 6165 6098 * 2888 153 0 0 chr6 74104336 74104820 -108310422 - L1PA13 LINE L1 0 6163 5680 8065 178 16 14 chr6 74104842 74106451 -108308791 - L1PA13 LINE L1 -1228 4918 3307 23 0 0 0 chr6 74106569 74106592 -108308650 + AT_rich Low_complexity Low_complexity 1 23 0 11745 243 33 16 chr6 74106592 74110661 -108304581 - L1PA16 LINE L1 -9 6157 2002 225 0 0 0 chr6 74110661 74110686 -108304556 + (TG)n Simple_repeat Simple_repeat 1 25 0 11745 243 33 16 chr6 74110686 74111269 -108303973 - L1PA16 LINE L1 -4164 2002 1430 1523 254 31 8 chr6 74111305 74111785 -108303457 - L1MC2 LINE L1 -953 5473 4983 901 232 21 47 chr6 74111789 74112022 -108303220 - AluJo SINE Alu -53 259 33 659 267 53 15 chr6 74112039 74112301 -108302941 - L1MC2 LINE L1 -1483 4943 4672 420 313 23 8 chr6 74112299 74112561 -108302681 - L1MC2 LINE L1 -3110 3316 3051 * 1595 236 40 6 chr6 74112641 74113111 -108302131 - L1MC2 LINE L1 -5166 1260 775 662 271 89 40 chr6 74113114 74113416 -108301826 - L1MC2 LINE L1 -6054 372 56 2712 106 25 5 chr6 74113416 74113812 -108301430 + MLT2A1 LTR ERVL 1 404 -40 319 99 14 42 chr6 74113812 74113883 -108301359 + (TA)n Simple_repeat Simple_repeat 1 69 0 279 140 0 20 chr6 74113889 74113939 -108301303 + MLT2A1 LTR ERVL 472 520 0 1174 306 38 13 chr6 74113996 74114546 -108300696 - L1M4c LINE L1 -4588 2371 1808 186 43 0 0 chr6 74114586 74114609 -108300633 + (TG)n Simple_repeat Simple_repeat 2 24 0 1427 194 56 3 chr6 74114625 74114913 -108300329 - MLT2D LTR ERVL -92 322 20 3271 238 77 66 chr6 74114984 74115160 -108300082 - L1M4c LINE L1 -5052 1803 1630 660 242 0 0 chr6 74115160 74115292 -108299950 - FLAM_C SINE Alu -1 132 1 3271 238 77 66 chr6 74115292 74116315 -108298927 - L1M4c LINE L1 -5225 1630 594 1393 344 70 2 chr6 74116336 74116854 -108298388 - L1M4c LINE L1 -6299 560 8 3639 192 52 26 chr6 74116998 74117824 -108297418 + L1MC1 LINE L1 5481 6332 -1 240 35 0 0 chr6 74119040 74119069 -108296173 + (A)n Simple_repeat Simple_repeat 1 29 0 219 325 114 35 chr6 74119285 74119399 -108295843 - L2 LINE L2 0 3272 3150 21 57 0 0 chr6 74119622 74119657 -108295585 + AT_rich Low_complexity Low_complexity 1 35 0 38 0 0 0 chr6 74120623 74120661 -108294581 + AT_rich Low_complexity Low_complexity 1 38 0 2463 76 3 3 chr6 74121024 74121352 -108293890 - L1PA7 LINE L1 -19 6135 5808 746 307 44 16 chr6 74121674 74121925 -108293317 + MIR SINE MIR 4 261 -1 30 59 0 0 chr6 74122108 74122159 -108293083 + AT_rich Low_complexity Low_complexity 1 51 0 425 314 35 12 chr6 74122326 74122495 -108292747 - MIR SINE MIR -15 247 75 532 300 21 21 chr6 74122709 74122899 -108292343 - MER58C DNA MER1_type -15 200 11 23 33 0 0 chr6 74123357 74123387 -108291855 + AT_rich Low_complexity Low_complexity 1 30 0 2487 217 14 21 chr6 74123451 74124028 -108291214 - L1 LINE L1 -1966 4180 3608 23 0 0 0 chr6 74124148 74124171 -108291071 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr6 74124378 74124408 -108290834 + AT_rich Low_complexity Low_complexity 1 30 0 21 104 0 0 chr6 74124474 74124551 -108290691 + AT_rich Low_complexity Low_complexity 1 77 0 314 302 96 62 chr6 74125362 74125736 -108289506 - L1M4 LINE L1 -2097 4049 3663 1631 193 44 29 chr6 74125884 74126268 -108288974 + MLT1B LTR MaLR 1 390 0 258 291 48 48 chr6 74127167 74127270 -108287972 + L2 LINE L2 3210 3312 -1 246 200 0 46 chr6 74128700 74128765 -108286477 - L1MCa LINE L1 -4359 2067 2006 579 68 0 107 chr6 74128937 74129040 -108286202 + L1PA13 LINE L1 5661 5752 -422 24 32 0 0 chr6 74129109 74129140 -108286102 + AT_rich Low_complexity Low_complexity 1 31 0 2327 97 29 0 chr6 74129279 74129619 -108285623 + L1PA13 LINE L1 5795 6144 -19 219 69 0 0 chr6 74129626 74129655 -108285587 + (CAA)n Simple_repeat Simple_repeat 2 30 0 762 146 0 165 chr6 74130412 74130570 -108284672 - MLT1C LTR MaLR -46 421 213 2276 83 0 0 chr6 74132536 74132838 -108282404 + AluY SINE Alu 1 302 -9 460 256 111 48 chr6 74133095 74133339 -108281903 + L1ME3A LINE L1 1531 1795 -4601 2392 67 0 0 chr6 74133339 74133639 -108281603 + AluY SINE Alu 1 300 -11 460 256 111 48 chr6 74133639 74133664 -108281578 + L1ME3A LINE L1 1795 1817 -4579 289 261 65 35 chr6 74133879 74134109 -108281133 + L1ME3A LINE L1 2095 2331 -4065 24 32 0 0 chr6 74134211 74134242 -108281000 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 74134279 74134324 -108280918 + AT_rich Low_complexity Low_complexity 1 45 0 295 322 110 41 chr6 74134366 74135103 -108280139 + L1ME3A LINE L1 4685 5472 -743 993 260 108 19 chr6 74135390 74135906 -108279336 + L1ME3A LINE L1 5486 6047 -192 600 347 91 17 chr6 74136180 74136738 -108278504 + L2 LINE L2 2462 3056 -257 267 31 0 0 chr6 74136883 74136915 -108278327 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6691 72 1 5 chr6 74136916 74138541 -108276701 - L1PA7 LINE L1 -17 6137 4515 5437 93 17 3 chr6 74138541 74139325 -108275917 + L1PA7 LINE L1 3716 4510 -1636 254 327 64 51 chr6 74139522 74139678 -108275564 - MLT1J LTR MaLR -253 258 101 207 0 0 0 chr6 74140692 74140715 -108274527 + (T)n Simple_repeat Simple_repeat 1 23 0 1167 191 0 0 chr6 74141300 74141541 -108273701 + L1MA4 LINE L1 6045 6285 -15 249 33 0 0 chr6 74141701 74141770 -108273472 + (TG)n Simple_repeat Simple_repeat 1 99 0 249 33 0 0 chr6 74141770 74141800 -108273442 + (TG)n Simple_repeat Simple_repeat 1 30 0 220 329 0 13 chr6 74141969 74142048 -108273194 + L2 LINE L2 3236 3313 0 1788 195 112 25 chr6 74142168 74142651 -108272591 - L1MA5 LINE L1 0 6300 5776 1168 168 5 5 chr6 74142653 74142862 -108272380 + L1MA5 LINE L1 5563 5771 -529 24 32 0 0 chr6 74143276 74143307 -108271935 + AT_rich Low_complexity Low_complexity 1 31 0 28 48 0 0 chr6 74143335 74143377 -108271865 + AT_rich Low_complexity Low_complexity 1 42 0 7654 19 0 0 chr6 74143382 74144548 -108270694 - L1PA2 LINE L1 0 6155 4987 500 0 0 0 chr6 74144549 74144604 -108270638 + L1PA2 LINE L1 4924 4978 -1168 2301 131 8 22 chr6 74144802 74145169 -108270073 + THE1B LTR MaLR 3 364 0 10585 123 10 5 chr6 74145169 74146741 -108268501 + THE1B-int LTR MaLR 1 1580 0 2229 140 14 32 chr6 74146741 74147112 -108268130 + THE1B LTR MaLR 1 364 0 225 284 23 11 chr6 74148463 74148551 -108266691 + L1MC4 LINE L1 6615 6703 -1339 * 234 237 11 43 chr6 74148527 74148620 -108266622 - L1MC4 LINE L1 -1339 6703 6614 365 239 8 0 chr6 74148627 74148744 -108266498 + (TA)n Simple_repeat Simple_repeat 2 119 0 283 167 73 10 chr6 74148757 74148853 -108266389 + (TA)n Simple_repeat Simple_repeat 2 103 0 605 149 37 0 chr6 74148969 74149076 -108266166 + HY1 scRNA scRNA 1 111 -1 812 176 0 0 chr6 74149753 74149906 -108265336 - L1MB1 LINE L1 -1 6167 6015 182 239 0 22 chr6 74149935 74149981 -108265261 - L2 LINE L2 -678 2636 2592 2050 131 0 6 chr6 74150412 74150724 -108264518 + AluSx SINE Alu 3 312 0 338 122 0 0 chr6 74151502 74151551 -108263691 - MADE1 DNA Mariner 0 80 32 40 107 0 0 chr6 74151599 74151758 -108263484 + AT_rich Low_complexity Low_complexity 1 159 0 21 36 0 0 chr6 74151876 74151904 -108263338 + AT_rich Low_complexity Low_complexity 1 28 0 645 241 14 57 chr6 74152281 74152493 -108262749 - MER3 DNA MER1_type -6 203 1 3332 219 77 26 chr6 74156601 74156689 -108258553 + L1MD2 LINE L1 5354 5436 -923 1376 154 97 84 chr6 74156689 74156871 -108258371 + THE1C LTR MaLR 1 179 -196 207 0 0 0 chr6 74156871 74156894 -108258348 + (TC)n Simple_repeat Simple_repeat 1 23 0 1376 154 97 84 chr6 74156894 74157081 -108258161 + THE1C LTR MaLR 179 375 0 7946 167 13 63 chr6 74157083 74158743 -108256499 + MSTA-int LTR MaLR 3 1580 0 1663 158 166 40 chr6 74158743 74159123 -108256119 + MSTA LTR MaLR 1 428 0 3332 219 77 26 chr6 74159123 74159986 -108255256 + L1MD2 LINE L1 5435 6358 -1 29 47 0 0 chr6 74160363 74160406 -108254836 + AT_rich Low_complexity Low_complexity 1 43 0 28 29 0 0 chr6 74160991 74161026 -108254216 + AT_rich Low_complexity Low_complexity 1 35 0 216 182 0 0 chr6 74161486 74161530 -108253712 + (TA)n Simple_repeat Simple_repeat 2 45 0 262 200 0 0 chr6 74161537 74161597 -108253645 + L1MC4 LINE L1 6649 6708 -1334 2094 196 35 12 chr6 74161988 74162502 -108252740 - L1MA6 LINE L1 -1 6299 5774 22 0 0 0 chr6 74163444 74163466 -108251776 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 74163666 74163687 -108251555 + AT_rich Low_complexity Low_complexity 1 21 0 276 383 57 16 chr6 74165074 74165267 -108249975 + MIR SINE MIR 6 206 -56 223 314 0 78 chr6 74165931 74166033 -108249209 - MIR3 SINE MIR -32 176 83 632 212 131 5 chr6 74166494 74166600 -108248642 + MER33 DNA MER1_type 6 97 -2488 207 0 0 0 chr6 74166600 74166623 -108248619 + (TA)n Simple_repeat Simple_repeat 1 23 0 632 212 131 5 chr6 74166623 74166738 -108248504 + MER33 DNA MER1_type 97 255 -69 288 106 21 0 chr6 74167477 74167524 -108247718 - MADE1 DNA Mariner 0 80 33 1161 263 97 3 chr6 74167765 74168107 -108247135 + HsTC2 DNA Tc2 1314 1687 -211 3500 215 47 50 chr6 74168642 74169668 -108245574 - Tigger6a DNA MER2_type -53 1030 8 12117 155 47 7 chr6 74169716 74171855 -108243387 + Tigger1 DNA MER2_type 1 2225 -193 558 108 0 0 chr6 74171856 74171939 -108243303 + (TA)n Simple_repeat Simple_repeat 2 84 0 1734 100 0 13 chr6 74171939 74172178 -108243064 - AluSq SINE Alu -10 303 68 7245 262 30 34 chr6 74372233 74375199 -108040043 - HERVH LTR ERV1 -4130 3589 821 552 228 35 108 chr6 74375558 74375900 -108039342 - LTR7 LTR ERV1 0 450 134 372 383 36 15 chr6 74376155 74376484 -108038758 - L1MEc LINE L1 -5941 455 120 278 167 0 0 chr6 74376586 74376634 -108038608 + MLT2C2 LTR ERVL 417 464 0 401 264 32 71 chr6 74376640 74376795 -108038447 + MLT1-int LTR MaLR 1061 1209 -162 287 150 17 0 chr6 74376931 74376991 -108038251 + (CA)n Simple_repeat Simple_repeat 2 62 0 1282 295 94 15 chr6 74377233 74377881 -108037361 - L1MC4a LINE L1 -1854 5954 5256 439 341 59 35 chr6 74377956 74378464 -108036778 - L1MC4a LINE L1 -997 5149 4630 279 0 0 0 chr6 74378641 74378672 -108036570 + (TTA)n Simple_repeat Simple_repeat 3 33 0 7008 22 0 0 chr6 74378672 74379475 -108035767 - L1PA3 LINE L1 -18 6137 5335 5678 25 0 0 chr6 74379471 74380138 -108035104 + L1P LINE L1 3650 4316 -1830 * 3381 149 4 19 chr6 74380238 74381004 -108034238 - HERVH LTR ERV1 -3992 3721 2795 2408 129 20 56 chr6 74381011 74381459 -108033783 + HERVH LTR ERV1 1027 1458 -6255 11791 129 32 28 chr6 74381461 74383917 -108031325 - HERVH LTR ERV1 -4925 2788 1 2290 125 56 51 chr6 74383917 74384365 -108030877 - LTR7 LTR ERV1 0 450 1 5813 117 22 0 chr6 74384365 74385321 -108029921 + L1PA10 LINE L1 5175 6149 -19 207 0 0 0 chr6 74385321 74385344 -108029898 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 521 253 72 24 chr6 74385354 74385647 -108029595 + Charlie2 DNA MER1_type 1768 2074 -788 1396 242 28 62 chr6 74385737 74386125 -108029117 - MLT2D LTR ERVL -40 480 3 396 150 203 60 chr6 74386147 74386280 -108028962 + Charlie2 DNA MER1_type 2145 2296 -566 735 289 37 66 chr6 74386430 74386839 -108028403 + L1MCb LINE L1 242 638 -5407 419 276 42 14 chr6 74386842 74387059 -108028183 - L1MC4a LINE L1 -1656 4490 4268 2726 132 25 21 chr6 74387059 74387647 -108027595 - MER4E LTR ERV1 0 779 1 1110 274 60 41 chr6 74387647 74388123 -108027119 - L1MC4a LINE L1 -1875 4271 3779 2983 166 46 75 chr6 74388123 74388834 -108026408 - LTR8 LTR ERV1 0 691 1 1110 274 60 41 chr6 74388834 74388989 -108026253 - L1MC4a LINE L1 -2367 3779 3628 1241 228 44 51 chr6 74388991 74389415 -108025827 + MER39 LTR ERV1 1 603 -104 2560 44 3 0 chr6 74389416 74389732 -108025510 - L1PA2 LINE L1 -1119 5027 4711 7810 17 0 0 chr6 74389732 74390852 -108024390 + L1PA2 LINE L1 5032 6151 -4 548 222 120 113 chr6 74390903 74391345 -108023897 - LTR7 LTR ERV1 -5 445 1 7377 262 20 13 chr6 74391345 74393420 -108021822 - HERVH LTR ERV1 0 7713 5625 6177 262 16 2 chr6 74393453 74395028 -108020214 - HERVH LTR ERV1 -2202 5511 3918 1573 82 14 0 chr6 74395129 74395337 -108019905 - AluSg SINE Alu -99 211 1 971 222 111 135 chr6 74395338 74396077 -108019165 - L1MC3 LINE L1 -1608 6595 5911 * 2104 264 74 9 chr6 74396054 74396838 -108018404 - L1MC3 LINE L1 -1216 5348 4514 2161 154 13 61 chr6 74396859 74397334 -108017908 - L1MB1 LINE L1 -3 6165 5714 1814 257 48 3 chr6 74397366 74397954 -108017288 + L1 LINE L1 4152 4765 -1381 * 2515 249 19 6 chr6 74397951 74398675 -108016567 - L1MC3 LINE L1 -2039 4525 3792 1535 201 3 13 chr6 74398753 74399067 -108016175 - AluJb SINE Alu -1 311 1 237 33 0 0 chr6 74399221 74399251 -108015991 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 361 241 69 43 chr6 74399251 74399402 -108015840 - L1MC3 LINE L1 -5911 295 1 364 308 72 46 chr6 74399451 74399688 -108015554 - HAL1 LINE L1 -1447 1060 818 26 88 0 0 chr6 74400253 74400321 -108014921 + AT_rich Low_complexity Low_complexity 1 68 0 6042 114 5 15 chr6 74400961 74402016 -108013226 + L1PA11 LINE L1 5123 6162 -12 5369 113 1 16 chr6 74402016 74402854 -108012388 - L1P LINE L1 -1678 4468 3643 5906 85 11 1 chr6 74403010 74403838 -108011404 + L1PA8A LINE L1 5294 6168 -6 4025 146 6 10 chr6 74405395 74405716 -108009526 - L1ME1 LINE L1 -7 6159 5838 3777 37 2 0 chr6 74405716 74406172 -108009070 - L1PA3 LINE L1 -3 6152 5696 4025 146 6 10 chr6 74406172 74407108 -108008134 - L1ME1 LINE L1 -328 5838 4912 3208 65 0 0 chr6 74407104 74407532 -108007710 + L1P LINE L1 1005 1432 -4714 * 517 316 0 0 chr6 74407620 74407791 -108007451 - L1ME LINE L1 -395 5771 5601 633 222 150 0 chr6 74407954 74408121 -108007121 + L1MC3 LINE L1 7154 7345 -440 239 193 18 18 chr6 74409863 74409920 -108005322 + (TATG)n Simple_repeat Simple_repeat 4 60 0 22 35 0 0 chr6 74409968 74409997 -108005245 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 74410043 74410072 -108005170 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr6 74411221 74411247 -108003995 + AT_rich Low_complexity Low_complexity 1 26 0 205 138 17 35 chr6 74411542 74411600 -108003642 + (TAA)n Simple_repeat Simple_repeat 3 59 0 29 28 0 0 chr6 74411636 74411672 -108003570 + AT_rich Low_complexity Low_complexity 1 36 0 2943 102 4 0 chr6 74412568 74413021 -108002221 - L1P LINE L1 -2815 3331 2877 4891 73 25 5 chr6 74413021 74413686 -108001556 + L1PA7 LINE L1 5466 6146 -8 2404 113 6 3 chr6 74414222 74414576 -108000666 - THE1A LTR MaLR 0 355 1 23 78 0 0 chr6 74416110 74416161 -107999081 + AT_rich Low_complexity Low_complexity 1 51 0 296 302 107 12 chr6 74416609 74416778 -107998464 + MIR SINE MIR 76 260 -2 34 55 0 0 chr6 74418760 74418815 -107996427 + AT_rich Low_complexity Low_complexity 1 55 0 205 214 57 0 chr6 74418902 74418972 -107996270 + (TA)n Simple_repeat Simple_repeat 2 75 0 1419 177 26 46 chr6 74419102 74419407 -107995835 + AluJo SINE Alu 1 299 -3 22 56 0 0 chr6 74419422 74419458 -107995784 + AT_rich Low_complexity Low_complexity 1 36 0 420 348 113 23 chr6 74419548 74420062 -107995180 + L2 LINE L2 2712 3306 -7 1966 142 10 6 chr6 74420327 74420638 -107994604 - AluSx SINE Alu 0 312 1 303 36 455 0 chr6 74420813 74420868 -107994374 + MADE1 DNA Mariner 1 80 0 1818 154 7 3 chr6 74423937 74424230 -107991012 + AluSq SINE Alu 3 296 -17 9046 104 22 0 chr6 74424245 74426363 -107988879 + L1PA7 LINE L1 4007 6150 -4 1679 189 0 0 chr6 74426415 74426706 -107988536 - AluSx SINE Alu -21 291 1 1062 192 33 60 chr6 74427696 74428029 -107987213 + MER33 DNA MER1_type 1 324 0 23 0 0 0 chr6 74428648 74428671 -107986571 + AT_rich Low_complexity Low_complexity 1 23 0 198 143 0 0 chr6 74429133 74429168 -107986074 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 298 127 28 0 chr6 74429197 74429268 -107985974 + (TA)n Simple_repeat Simple_repeat 2 74 0 873 141 8 0 chr6 74429268 74429396 -107985846 - AluSq/x SINE Alu -184 129 1 186 43 0 0 chr6 74429399 74429422 -107985820 + (TG)n Simple_repeat Simple_repeat 2 24 0 1444 192 0 45 chr6 74429990 74430303 -107984939 - AluJo SINE Alu -7 305 7 1139 181 22 13 chr6 74430713 74430939 -107984303 - L1 LINE L1 -1870 4345 4118 958 262 69 18 chr6 74430961 74431409 -107983833 - L1MEc LINE L1 -3413 2802 2353 712 311 35 14 chr6 74431436 74431725 -107983517 - L1MEc LINE L1 -6067 329 35 3027 144 88 0 chr6 74431900 74432434 -107982808 - L1PA16 LINE L1 -6 6160 5580 448 188 10 10 chr6 74433395 74433496 -107981746 - L1MC1 LINE L1 0 6333 6233 232 316 65 14 chr6 74434365 74434504 -107980738 - L1MC4 LINE L1 -1124 6918 6773 602 291 8 96 chr6 74434660 74434921 -107980321 + MIR SINE MIR 8 245 -17 322 273 33 16 chr6 74435847 74435968 -107979274 + CT-rich Low_complexity Low_complexity 2 124 0 711 187 60 0 chr6 74436091 74436225 -107979017 + MLT1A1 LTR MaLR 212 353 -12 688 225 22 40 chr6 74436228 74436450 -107978792 - L1MC3 LINE L1 -66 7719 7502 444 209 84 52 chr6 74436433 74436700 -107978542 - L1MCb LINE L1 -4590 1974 1588 * 3968 169 29 6 chr6 74436708 74437408 -107977834 - MER50 LTR ERV1 -18 716 1 2871 250 56 31 chr6 74437408 74438104 -107977138 - L1MCb LINE L1 -4851 1194 828 5225 91 63 21 chr6 74438104 74438897 -107976345 + LTR12 LTR ERV1 1 826 0 2871 250 56 31 chr6 74438897 74439746 -107975496 - L1MCb LINE L1 -5217 828 1 221 238 12 36 chr6 74439995 74440079 -107975163 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 22 0 0 0 chr6 74441446 74441468 -107973774 + AT_rich Low_complexity Low_complexity 1 22 0 5862 135 103 31 chr6 74441604 74442810 -107972432 + pTR5 LTR ERV1 743 2034 -404 260 271 12 0 chr6 74442813 74442898 -107972344 + LTR30 LTR ERV1 558 643 -79 1384 125 10 10 chr6 74442900 74443136 -107972106 + pTR5 LTR ERV1 69 392 -2046 235 226 19 0 chr6 74443338 74443391 -107971851 - MIR SINE MIR -103 159 106 322 370 34 7 chr6 74443577 74443723 -107971519 - MIR SINE MIR -112 150 1 31 88 0 0 chr6 74443870 74443950 -107971292 + AT_rich Low_complexity Low_complexity 1 80 0 308 377 78 0 chr6 74444938 74445105 -107970137 + MER5A DNA MER1_type 7 186 -3 207 300 50 62 chr6 74445162 74445322 -107969920 + MIR SINE MIR 105 262 0 242 299 28 19 chr6 74445517 74445624 -107969618 + L2 LINE L2 2524 2631 -683 21 0 0 0 chr6 74445745 74445766 -107969476 + AT_rich Low_complexity Low_complexity 1 21 0 288 331 55 28 chr6 74446141 74446286 -107968956 + L2 LINE L2 3124 3272 0 257 178 0 0 chr6 74446356 74446401 -107968841 - L1MC4 LINE L1 -1340 6702 6658 246 105 35 18 chr6 74446424 74446481 -107968761 + (TA)n Simple_repeat Simple_repeat 2 59 0 184 98 24 24 chr6 74446829 74446870 -107968372 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 212 205 0 0 chr6 74447110 74447149 -107968093 - MIR SINE MIR -108 154 116 462 343 64 27 chr6 74447275 74447714 -107967528 - L2 LINE L2 -131 3182 2733 633 249 85 0 chr6 74447735 74447924 -107967318 - L1MB7 LINE L1 -5 6179 5975 1550 216 14 3 chr6 74448578 74448875 -107966367 - AluJb SINE Alu -4 308 9 180 0 0 0 chr6 74449478 74449498 -107965744 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2038 125 0 0 chr6 74449500 74449787 -107965455 - AluSx SINE Alu -25 287 1 279 211 28 14 chr6 74450735 74450806 -107964436 + MIR SINE MIR 118 189 -73 25 0 0 0 chr6 74451961 74451986 -107963256 + AT_rich Low_complexity Low_complexity 1 25 0 1163 224 54 1 chr6 74452974 74453279 -107961963 - MER58B DNA MER1_type 0 341 1 24 32 0 0 chr6 74453780 74453811 -107961431 + AT_rich Low_complexity Low_complexity 1 31 0 1549 215 29 29 chr6 74454730 74455079 -107960163 - MLT1A1 LTR MaLR -16 349 1 28 48 0 0 chr6 74455082 74455124 -107960118 + AT_rich Low_complexity Low_complexity 1 42 0 283 311 121 30 chr6 74455183 74455315 -107959927 - MER5A DNA MER1_type -3 186 43 244 313 97 28 chr6 74455198 74455342 -107959900 + MER5A DNA MER1_type 33 186 -3 * 336 391 31 45 chr6 74455622 74455911 -107959331 + L1M2a LINE L1 1559 1843 -5325 1865 265 56 18 chr6 74456006 74456608 -107958634 + L1M2a LINE L1 1898 2533 -4635 2081 117 10 7 chr6 74456608 74456916 -107958326 - AluSp SINE Alu -3 310 2 1865 265 56 18 chr6 74456916 74457195 -107958047 + L1M2a LINE L1 2533 2800 -4368 781 217 49 76 chr6 74457227 74457738 -107957504 - L1MB7 LINE L1 -389 5775 5325 1252 134 25 0 chr6 74457738 74457939 -107957303 - L1PA13 LINE L1 -4 6159 5954 1004 105 11 17 chr6 74457939 74458120 -107957122 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 182 128 43 0 chr6 74458140 74458187 -107957055 + CT-rich Low_complexity Low_complexity 3 51 0 655 274 61 5 chr6 74458189 74458366 -107956876 - AluJo SINE Alu -3 309 117 396 0 0 0 chr6 74458366 74458410 -107956832 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 655 274 61 5 chr6 74458410 74458444 -107956798 - AluJo SINE Alu -195 117 86 4587 261 69 13 chr6 74458445 74460462 -107954780 + L1MCa LINE L1 1640 3894 -2532 205 211 0 0 chr6 74460671 74460709 -107954533 + A-rich Low_complexity Low_complexity 1 38 0 2221 209 91 17 chr6 74460930 74461533 -107953709 + L1MCa LINE L1 3902 4549 -1877 936 220 26 17 chr6 74461537 74461769 -107953473 - Tigger1 DNA MER2_type -1 2417 2184 9056 163 32 17 chr6 74461769 74462515 -107952727 - Tigger1 DNA MER2_type -433 1985 1252 2167 109 0 3 chr6 74462515 74462809 -107952433 + AluY SINE Alu 4 296 -15 9056 163 32 17 chr6 74462809 74463724 -107951518 - Tigger1 DNA MER2_type -1166 1252 299 578 88 0 0 chr6 74463728 74463808 -107951434 + AluSg/x SINE Alu 214 293 -16 4605 204 46 14 chr6 74463815 74464487 -107950755 + L1MA2 LINE L1 11 723 -6842 189 0 0 0 chr6 74464487 74464508 -107950734 + (GGAGA)n Simple_repeat Simple_repeat 5 25 0 4605 204 46 14 chr6 74464508 74464772 -107950470 + L1MA2 LINE L1 723 977 -6588 * 10462 198 36 27 chr6 74464769 74467825 -107947417 + L1MA2 LINE L1 2705 5802 -1763 1757 163 7 0 chr6 74467825 74468114 -107947128 + AluSq SINE Alu 4 294 -19 10462 198 36 27 chr6 74468114 74468532 -107946710 + L1MA2 LINE L1 5802 6214 -1351 2795 140 8 14 chr6 74468529 74469014 -107946228 + L1MA2 LINE L1 7138 7619 -104 * 971 109 49 6 chr6 74469019 74469202 -107946040 + L1MA6 LINE L1 6110 6300 0 321 263 53 26 chr6 74469275 74469427 -107945815 + L1MEc LINE L1 954 1109 -5287 450 317 78 42 chr6 74469450 74469810 -107945432 + L1MEc LINE L1 1131 1503 -4712 534 309 15 0 chr6 74469835 74470039 -107945203 + L1MEc LINE L1 1588 1794 -4602 3769 152 14 2 chr6 74470185 74470804 -107944438 - MER41B LTR ERV1 -8 627 1 555 164 0 0 chr6 74471005 74471109 -107944133 + MLT2B3 LTR ERVL 1 104 -450 216 319 0 0 chr6 74471227 74471274 -107943968 - MIR SINE MIR -174 88 42 236 279 0 0 chr6 74471437 74471498 -107943744 + GA-rich Low_complexity Low_complexity 1 61 0 567 294 31 0 chr6 74471538 74471701 -107943541 + MER5B DNA MER1_type 4 171 -7 807 194 76 46 chr6 74471753 74471990 -107943252 + LTR49 LTR ERV1 1 244 -351 1824 101 8 19 chr6 74471992 74472260 -107942982 + THE1C LTR MaLR 111 375 0 1489 135 4 0 chr6 74472300 74472545 -107942697 + L1MA1 LINE L1 6057 6302 0 29 28 0 0 chr6 74472545 74472581 -107942661 + AT_rich Low_complexity Low_complexity 1 36 0 791 188 0 97 chr6 74472581 74472788 -107942454 + MER41-int LTR ERV1 4398 4584 -1362 408 70 18 0 chr6 74472789 74472846 -107942396 - MER4C LTR ERV1 0 465 408 776 261 84 4 chr6 74472846 74473072 -107942170 + L1MD2 LINE L1 5845 6088 -271 2026 124 60 49 chr6 74473073 74473443 -107941799 + MSTA LTR MaLR 1 374 -54 789 114 200 0 chr6 74473452 74473592 -107941650 - MER4C LTR ERV1 -40 425 258 6805 181 64 39 chr6 74473593 74475677 -107939565 - MER4C-int LTR ERV1 -1484 5114 3083 1943 156 0 9 chr6 74475677 74475992 -107939250 - AluSx SINE Alu 0 312 1 6805 181 64 39 chr6 74475992 74477515 -107937727 - MER4C-int LTR ERV1 -3515 3083 1599 2295 98 3 0 chr6 74477515 74477812 -107937430 + AluSp SINE Alu 1 298 -15 6805 181 64 39 chr6 74477812 74477832 -107937410 - MER4C-int LTR ERV1 -4999 1599 1581 378 0 0 0 chr6 74477832 74477874 -107937368 + (CA)n Simple_repeat Simple_repeat 2 43 0 6805 181 64 39 chr6 74477874 74478921 -107936321 - MER4C-int LTR ERV1 -5017 1581 1 2753 111 71 0 chr6 74478924 74479358 -107935884 - MER4C LTR ERV1 0 465 1 6376 169 93 29 chr6 74479363 74480826 -107934416 + LTR49-int LTR ERV1 4773 6328 -3 1803 202 103 29 chr6 74480828 74481382 -107933860 + LTR49 LTR ERV1 1 595 0 374 303 0 0 chr6 74481450 74481539 -107933703 - MER5A DNA MER1_type -83 106 18 199 281 35 0 chr6 74481566 74481623 -107933619 + MER5A DNA MER1_type 45 103 -86 27 62 0 0 chr6 74481853 74481901 -107933341 + AT_rich Low_complexity Low_complexity 1 48 0 443 345 97 50 chr6 74481958 74482434 -107932808 + Charlie2b DNA MER1_type 172 669 -2113 676 235 51 30 chr6 74482539 74482773 -107932469 + Charlie2a DNA MER1_type 1496 1734 -1128 6911 152 10 2 chr6 74482819 74484004 -107931238 + L1P LINE L1 3985 5179 -967 2229 141 62 21 chr6 74484004 74484436 -107930806 - LTR7 LTR ERV1 0 450 1 3398 132 6 16 chr6 74484436 74484983 -107930259 - HERVH LTR ERV1 0 7713 7173 853 131 0 29 chr6 74484979 74485116 -107930126 - HERVH LTR ERV1 -424 7289 7157 * 2251 156 26 5 chr6 74485109 74485527 -107929715 - HERVH LTR ERV1 -1697 6016 5590 * 5912 123 12 2 chr6 74485518 74486406 -107928836 - HERVH LTR ERV1 -2564 5149 4253 7664 29 4 29 chr6 74486506 74487477 -107927765 + L1P LINE L1 4307 5253 -893 280 167 83 42 chr6 74488464 74488536 -107926706 - MLT1J LTR MaLR -49 462 388 265 272 37 24 chr6 74488747 74488880 -107926362 - MLT1L LTR MaLR -373 138 1 25 31 0 0 chr6 74489769 74489801 -107925441 + AT_rich Low_complexity Low_complexity 1 32 0 185 0 0 39 chr6 74489934 74489960 -107925282 + (TTA)n Simple_repeat Simple_repeat 2 26 0 897 119 0 14 chr6 74490069 74490212 -107925030 - L1PA15 LINE L1 -7 6158 6018 23 33 0 0 chr6 74490465 74490495 -107924747 + AT_rich Low_complexity Low_complexity 1 30 0 394 296 161 34 chr6 74490846 74491277 -107923965 - L2 LINE L2 -1 3312 2937 330 0 0 57 chr6 74491277 74491330 -107923912 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1912 124 4 4 chr6 74491334 74491609 -107923633 - AluSg SINE Alu -35 275 1 394 296 161 34 chr6 74491609 74491645 -107923597 - L2 LINE L2 -378 2935 2681 1322 242 21 15 chr6 74491676 74492007 -107923235 - MLT1A2 LTR MaLR -41 333 1 197 348 209 0 chr6 74492154 74492269 -107922973 - L2 LINE L2 -700 2614 2476 202 203 29 14 chr6 74492396 74492465 -107922777 + (TATAA)n Simple_repeat Simple_repeat 1 70 0 21 36 0 0 chr6 74492821 74492849 -107922393 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr6 74492882 74492907 -107922335 + AT_rich Low_complexity Low_complexity 1 25 0 181 57 57 0 chr6 74492945 74492980 -107922262 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 188 29 0 88 chr6 74493342 74493376 -107921866 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2722 238 28 66 chr6 74493405 74493547 -107921695 - L1P LINE L1 -2688 3458 3312 2009 123 7 3 chr6 74493547 74493856 -107921386 - AluSg SINE Alu 0 310 1 2722 238 28 66 chr6 74493856 74493867 -107921375 - L1P LINE L1 -2834 3312 3302 2755 119 77 8 chr6 74493867 74494345 -107920897 + MER9 LTR ERVK 1 511 0 2722 238 28 66 chr6 74494345 74494864 -107920378 - L1P LINE L1 -2844 3302 2855 2284 93 0 3 chr6 74494864 74495175 -107920067 - AluY SINE Alu -1 310 1 2722 238 28 66 chr6 74495175 74495447 -107919795 - L1P LINE L1 -3291 2855 2574 9127 180 11 24 chr6 74495452 74498170 -107917072 + L1PA14 LINE L1 3435 6159 -2 545 212 119 0 chr6 74498299 74498417 -107916825 + FLAM_C SINE Alu 2 133 0 31 0 0 0 chr6 74498782 74498813 -107916429 + AT_rich Low_complexity Low_complexity 1 31 0 306 106 0 0 chr6 74498853 74498900 -107916342 + (CA)n Simple_repeat Simple_repeat 2 48 0 932 247 115 31 chr6 74499293 74499746 -107915496 + Charlie4a DNA MER1_type 7 497 -11 1535 260 106 25 chr6 74499746 74500848 -107914394 - L1MCa LINE L1 -3502 2924 1733 * 6159 205 41 78 chr6 74500836 74502780 -107912462 - L1MC3 LINE L1 0 7785 5915 2122 113 6 0 chr6 74502787 74503098 -107912144 - AluSp SINE Alu 0 313 1 15870 186 59 16 chr6 74503111 74507622 -107907620 - L1MC3 LINE L1 -169 7616 2903 6505 111 2 31 chr6 74507622 74508586 -107906656 + L1P LINE L1 1886 2820 -3326 2252 119 3 0 chr6 74508586 74508898 -107906344 + AluSp SINE Alu 1 313 0 6505 111 2 31 chr6 74508898 74508963 -107906279 + L1P LINE L1 2820 2885 -3261 239 350 21 63 chr6 74510116 74510259 -107904983 - L2 LINE L2 -212 3060 2924 2005 223 8 0 chr6 74510309 74510694 -107904548 + MER66A LTR ERV1 21 408 -70 1064 186 21 5 chr6 74510695 74510888 -107904354 - MER66A LTR ERV1 -134 344 149 1850 194 9 20 chr6 74510925 74511270 -107903972 + MLT1A1 LTR MaLR 25 365 0 29 0 0 0 chr6 74511838 74511867 -107903375 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 74512279 74512304 -107902938 + AT_rich Low_complexity Low_complexity 1 25 0 238 263 0 0 chr6 74512319 74512376 -107902866 + T-rich Low_complexity Low_complexity 2 58 0 1857 212 5 13 chr6 74512444 74512822 -107902420 + THE1C LTR MaLR 1 375 0 8656 129 14 83 chr6 74512822 74514519 -107900723 + THE1C-int LTR MaLR 1 1580 0 2074 150 24 19 chr6 74514519 74514892 -107900350 + THE1C LTR MaLR 1 375 0 2175 183 8 0 chr6 74515182 74515582 -107899660 + MER57A LTR ERV1 1 403 0 384 246 63 69 chr6 74515961 74516136 -107899106 - MLT1J LTR MaLR -327 184 11 499 309 66 25 chr6 74516292 74516535 -107898707 + MIR SINE MIR 8 260 -2 1827 129 0 85 chr6 74516619 74516960 -107898282 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 74519852 74519873 -107895369 + AT_rich Low_complexity Low_complexity 1 21 0 224 103 26 0 chr6 74520469 74520508 -107894734 + MER5A DNA MER1_type 30 69 -120 779 290 24 16 chr6 74520583 74520838 -107894404 + MIR SINE MIR 3 259 -3 2279 77 0 0 chr6 74520848 74521134 -107894108 + AluSg1 SINE Alu 11 296 -13 201 147 0 0 chr6 74521607 74521641 -107893601 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 71 0 0 chr6 74522540 74522582 -107892660 + AT_rich Low_complexity Low_complexity 1 42 0 601 346 191 11 chr6 74524050 74524510 -107890732 - L2 LINE L2 -285 3028 2490 21 0 0 0 chr6 74526076 74526097 -107889145 + AT_rich Low_complexity Low_complexity 1 21 0 808 243 141 45 chr6 74530040 74530373 -107884869 + MLT1A1 LTR MaLR 1 365 0 1931 132 26 0 chr6 74531286 74531589 -107883653 - AluJb SINE Alu -1 311 1 25 31 0 0 chr6 74531991 74532023 -107883219 + AT_rich Low_complexity Low_complexity 1 32 0 25 90 0 0 chr6 74532266 74532333 -107882909 + AT_rich Low_complexity Low_complexity 1 67 0 638 193 8 25 chr6 74532858 74532977 -107882265 + FLAM_C SINE Alu 13 129 -14 307 197 16 0 chr6 74533321 74533382 -107881860 - LTR16B LTR ERVL -11 453 392 398 176 0 0 chr6 74533927 74533995 -107881247 - MSTD LTR MaLR 0 396 329 684 318 85 66 chr6 74534210 74535141 -107880101 - HERV16 LTR ERVL -547 4449 3554 303 71 0 0 chr6 74535141 74535183 -107880059 + (CA)n Simple_repeat Simple_repeat 2 43 0 684 318 85 66 chr6 74535183 74535283 -107879959 - HERV16 LTR ERVL -1442 3554 3457 185 0 40 0 chr6 74535297 74535322 -107879920 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 810 252 0 0 chr6 74535322 74535473 -107879769 - FAM SINE Alu -27 158 8 2327 326 35 58 chr6 74535665 74537000 -107878242 - HERV16 LTR ERVL -1907 3089 1899 1793 348 36 19 chr6 74537185 74538047 -107877195 - HERV16 LTR ERVL -3433 1563 687 270 410 31 15 chr6 74538231 74538689 -107876553 - HERV16 LTR ERVL -4499 497 33 1281 289 35 32 chr6 74538707 74539009 -107876233 - LTR16B LTR ERVL 0 464 159 1747 167 53 109 chr6 74539009 74539458 -107875784 - MSTC LTR MaLR 0 428 5 1281 289 35 32 chr6 74539458 74539618 -107875624 - LTR16B LTR ERVL -305 159 1 3944 20 0 0 chr6 74540746 74541202 -107874040 - L1PA2 LINE L1 0 6155 5700 25 0 0 0 chr6 74541684 74541709 -107873533 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 74542151 74542179 -107873063 + AT_rich Low_complexity Low_complexity 1 28 0 1652 208 17 22 chr6 74542617 74542977 -107872265 + MLT1A1 LTR MaLR 4 361 -4 193 328 33 0 chr6 74543006 74543067 -107872175 + MIR SINE MIR 36 98 -164 31 26 0 0 chr6 74543114 74543152 -107872090 + AT_rich Low_complexity Low_complexity 1 38 0 832 29 0 0 chr6 74543268 74543370 -107871872 + L1PA2 LINE L1 6052 6153 -2 1471 221 168 18 chr6 74544011 74544458 -107870784 + MER67D LTR ERV1 1 514 0 247 185 37 62 chr6 74545123 74545204 -107870038 - L1ME4a LINE L1 -1 6120 6042 254 366 99 6 chr6 74545214 74545375 -107869867 - L2 LINE L2 -3 3310 3135 2198 243 111 83 chr6 74545622 74547073 -107868169 + L1MC/D LINE L1 461 2030 -4534 1184 270 76 25 chr6 74547062 74547758 -107867484 + L1MC/D LINE L1 2305 2992 -3572 * 2383 232 71 29 chr6 74547822 74547998 -107867244 + L1MC/D LINE L1 4822 4989 -1990 1891 153 24 34 chr6 74547998 74548377 -107866865 + THE1C LTR MaLR 1 375 0 2383 232 71 29 chr6 74548377 74549078 -107866164 + L1MC/D LINE L1 4989 5772 -1207 1325 187 16 60 chr6 74549078 74549394 -107865848 + AluJo SINE Alu 1 302 0 2383 232 71 29 chr6 74549394 74549880 -107865362 + L1MC/D LINE L1 5772 6236 -743 1783 128 73 0 chr6 74549994 74550268 -107864974 + AluSx SINE Alu 1 294 -18 807 299 75 52 chr6 74550467 74550851 -107864391 + LTR16A LTR ERVL 53 445 -5 757 290 45 0 chr6 74551013 74551237 -107864005 + HERV16 LTR ERVL 192 425 -4571 850 300 76 38 chr6 74551640 74552063 -107863179 + HERV16 LTR ERVL 933 1371 -3625 215 56 0 113 chr6 74552101 74552172 -107863070 + (CAAAAA)n Simple_repeat Simple_repeat 4 66 0 1358 312 32 12 chr6 74552310 74552807 -107862435 + HERV16 LTR ERVL 1642 2148 -2848 1710 313 96 61 chr6 74552872 74553441 -107861801 + HERV16 LTR ERVL 2265 2813 -2183 1708 237 10 10 chr6 74553441 74553837 -107861405 + MSTD LTR MaLR 1 396 0 1710 313 96 61 chr6 74553837 74554524 -107860718 + HERV16 LTR ERVL 2813 3565 -1431 690 340 54 38 chr6 74554644 74555276 -107859966 + HERV16 LTR ERVL 4703 5344 -310 335 269 246 0 chr6 74555426 74555560 -107859682 - MER96 DNA MER1_type -4 171 5 1160 308 27 15 chr6 74555565 74555971 -107859271 + LTR16A LTR ERVL 26 436 -14 195 235 0 0 chr6 74556156 74556207 -107859035 + C-rich Low_complexity Low_complexity 16 66 0 652 221 38 24 chr6 74606465 74606681 -107808561 - MLT1B LTR MaLR -92 375 103 675 290 183 10 chr6 74606896 74607296 -107807946 + L1ME4a LINE L1 5290 5758 -2050 191 318 167 35 chr6 74607813 74608011 -107807231 - L2 LINE L2 -1400 1914 1691 2150 128 0 0 chr6 74608029 74608335 -107806907 + AluSx SINE Alu 1 306 -6 999 198 77 3 chr6 74609244 74609490 -107805752 + L1MA6 LINE L1 6036 6292 -8 22 0 0 0 chr6 74609492 74609514 -107805728 + AT_rich Low_complexity Low_complexity 1 22 0 353 375 16 0 chr6 74609609 74609737 -107805505 + MIR SINE MIR 7 136 -126 1036 201 4 28 chr6 74609896 74610145 -107805097 + L1MD3 LINE L1 7721 7963 -32 239 274 26 17 chr6 74610178 74610295 -107804947 + L1ME4a LINE L1 5831 5948 -173 21 0 0 0 chr6 74610405 74610426 -107804816 + AT_rich Low_complexity Low_complexity 1 21 0 266 211 0 64 chr6 74612724 74612880 -107802362 + (TTTA)n Simple_repeat Simple_repeat 4 149 0 684 210 14 0 chr6 74612907 74613045 -107802197 - AluJo SINE Alu -19 293 154 581 178 0 0 chr6 74613045 74613146 -107802096 - AluJo SINE Alu -205 107 7 21 36 0 0 chr6 74613316 74613344 -107801898 + AT_rich Low_complexity Low_complexity 1 28 0 4256 148 54 28 chr6 74614102 74615056 -107800186 + MER11C LTR ERVK 1 1071 0 210 338 88 44 chr6 74615075 74615235 -107800007 - L2 LINE L2 -996 2318 2152 1339 140 4 8 chr6 74615416 74615651 -107799591 + L1MA8 LINE L1 6055 6288 -3 319 389 40 0 chr6 74616065 74616240 -107799002 + MIR SINE MIR 8 189 -73 32 26 0 0 chr6 74616373 74616412 -107798830 + AT_rich Low_complexity Low_complexity 1 39 0 677 198 0 0 chr6 74617626 74617747 -107797495 - AluJ SINE Alu -8 304 184 572 172 10 10 chr6 74617769 74617868 -107797374 - AluJ SINE Alu -191 121 23 446 351 49 36 chr6 74617870 74618255 -107796987 + LTR40a LTR ERVL 88 477 -42 533 304 78 25 chr6 74618313 74618711 -107796531 + L1ME LINE L1 4394 4812 -1334 425 361 18 6 chr6 74619061 74619345 -107795897 + L1ME LINE L1 5434 5722 -448 228 265 0 0 chr6 74619868 74619966 -107795276 + (TA)n Simple_repeat Simple_repeat 2 99 0 2301 78 0 19 chr6 74620163 74620472 -107794770 + AluSg SINE Alu 1 303 -7 1232 100 0 0 chr6 74620472 74620642 -107794600 + AluY SINE Alu 133 302 -9 299 210 0 12 chr6 74621161 74621242 -107794000 + (TA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr6 74621259 74621282 -107793960 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr6 74621302 74621323 -107793919 + (TG)n Simple_repeat Simple_repeat 2 22 0 424 273 68 24 chr6 74624868 74625117 -107790125 + L1ME LINE L1 1213 1472 -4951 258 262 24 0 chr6 74625144 74625228 -107790014 + L1ME LINE L1 1669 1754 -5187 302 303 178 0 chr6 74625239 74625391 -107789851 + L1ME LINE L1 1807 1985 -4956 661 146 0 0 chr6 74625405 74625515 -107789727 + FLAM_A SINE Alu 33 142 0 581 313 133 23 chr6 74625545 74626631 -107788611 + L1ME LINE L1 2039 3244 -3878 686 305 45 50 chr6 74626651 74627130 -107788112 + L1ME LINE L1 3771 4254 -2687 6395 152 32 29 chr6 74627130 74627665 -107787577 + Tigger3b DNA MER2_type 1 533 -2495 1262 157 109 61 chr6 74627665 74627958 -107787284 - AluJb SINE Alu -5 307 1 6395 152 32 29 chr6 74627958 74628650 -107786592 + Tigger3b DNA MER2_type 533 1231 0 686 305 45 50 chr6 74628650 74628991 -107786251 + L1ME LINE L1 4254 4595 -2346 640 219 43 111 chr6 74628993 74629321 -107785921 + L1ME LINE L1 5934 6241 -718 23 33 0 0 chr6 74629543 74629573 -107785669 + GC_rich Low_complexity Low_complexity 1 30 0 513 258 90 110 chr6 74629751 74630151 -107785091 - L2 LINE L2 -1215 2099 1708 28 48 0 0 chr6 74630155 74630197 -107785045 + AT_rich Low_complexity Low_complexity 1 42 0 230 89 78 67 chr6 74630900 74630990 -107784252 + (TTAA)n Simple_repeat Simple_repeat 4 94 0 1141 147 0 46 chr6 74630997 74631194 -107784048 - AluSx SINE Alu -124 188 1 521 238 53 13 chr6 74633879 74634030 -107781212 + MER106B DNA MER1_type 903 1059 0 482 252 86 26 chr6 74634050 74634298 -107780944 + LTR1 LTR ERV1 33 415 -286 234 230 14 14 chr6 74634305 74634379 -107780863 + (TA)n Simple_repeat Simple_repeat 1 74 0 181 367 142 8 chr6 74634821 74634941 -107780301 - L2 LINE L2 -221 3051 2916 225 219 62 0 chr6 74636106 74636170 -107779072 + MIR SINE MIR 96 163 -99 25 31 0 0 chr6 74636233 74636265 -107778977 + AT_rich Low_complexity Low_complexity 1 32 0 4303 214 61 30 chr6 74637391 74638355 -107776887 - L1MC2 LINE L1 -9 6335 5283 2506 90 128 5 chr6 74638355 74638754 -107776488 - LTR7 LTR ERV1 -2 448 1 4303 214 61 30 chr6 74638754 74639587 -107775655 - L1MC2 LINE L1 -1061 5283 4477 202 292 31 42 chr6 74640004 74640100 -107775142 + MIR3 SINE MIR 114 208 0 2470 14 0 0 chr6 74642028 74642304 -107772938 + AluYa5 SINE Alu 1 276 -35 291 258 0 34 chr6 74643379 74643468 -107771774 + MIR SINE MIR 177 262 0 457 216 43 0 chr6 74643622 74643738 -107771504 - L1 LINE L1 -1314 4832 4712 * 2490 188 72 11 chr6 74643735 74644576 -107770666 + L1MB1 LINE L1 4989 5870 -298 9470 100 24 4 chr6 74644578 74646763 -107768479 - L1PA7 LINE L1 -1 6153 3932 1216 230 7 3 chr6 74646763 74647045 -107768197 + L1MB1 LINE L1 5883 6166 -2 331 166 12 27 chr6 74647084 74647183 -107768059 - L1M LINE L1 -886 5414 5318 281 352 40 16 chr6 74647629 74647754 -107767488 - LTR16C LTR ERVL -273 218 91 851 164 23 46 chr6 74647949 74648168 -107767074 - L1MA9 LINE L1 -10 6302 6089 633 205 34 39 chr6 74648304 74648509 -107766733 - L1MC/D LINE L1 -2336 5472 5269 1420 216 3 7 chr6 74648520 74648812 -107766430 + AluJb SINE Alu 13 303 -9 1020 327 110 19 chr6 74649254 74649961 -107765281 + L2 LINE L2 2544 3308 -5 323 355 75 23 chr6 74649969 74650234 -107765008 + L2 LINE L2 2636 2914 -400 712 202 0 0 chr6 74650268 74650397 -107764845 + MER94 DNA DNA 1 129 -5 275 298 77 39 chr6 74650414 74650518 -107764724 + L2 LINE L2 2950 3057 -215 210 347 20 0 chr6 74650711 74650809 -107764433 + MIR SINE MIR 17 116 -146 23 0 0 0 chr6 74650947 74650970 -107764272 + AT_rich Low_complexity Low_complexity 1 23 0 249 83 0 0 chr6 74651557 74651593 -107763649 + (CA)n Simple_repeat Simple_repeat 1 36 0 214 210 6 216 chr6 74651648 74651824 -107763418 - MIR SINE MIR 0 262 124 2336 58 0 29 chr6 74653264 74653572 -107761670 + AluY SINE Alu 2 300 -11 2073 126 7 0 chr6 74653640 74653942 -107761300 + AluSx SINE Alu 1 304 -8 30 77 0 0 chr6 74655700 74655765 -107759477 + AT_rich Low_complexity Low_complexity 1 65 0 922 170 37 198 chr6 74656350 74656785 -107758457 + MLT1A1 LTR MaLR 1 365 0 403 296 63 39 chr6 74656797 74657138 -107758104 + L1ME LINE L1 5296 5648 -514 2459 33 10 0 chr6 74657431 74657731 -107757511 + AluY SINE Alu 1 303 -8 3039 161 9 7 chr6 74657737 74658285 -107756957 + L1PA16 LINE L1 5607 6155 -11 1265 162 123 0 chr6 74658308 74658543 -107756699 - LTR44 LTR ERV1 -134 385 122 987 97 0 52 chr6 74658546 74658700 -107756542 - AluSg/x SINE Alu -11 299 154 343 197 14 14 chr6 74658729 74658800 -107756442 - LTR44 LTR ERV1 -424 95 25 718 292 45 0 chr6 74659433 74659635 -107755607 + MER58A DNA MER1_type 10 220 -4 1699 163 49 41 chr6 74659645 74660014 -107755228 - THE1C LTR MaLR -3 372 1 1349 160 18 28 chr6 74660014 74660296 -107754946 - THE1C-int LTR MaLR 0 1580 1302 548 143 11 0 chr6 74660400 74660491 -107754751 - THE1C-int LTR MaLR -1041 539 448 250 149 21 0 chr6 74660489 74660536 -107754706 - THE1C-int LTR MaLR -1603 48 1 * 4862 90 18 4 chr6 74660771 74661481 -107753761 - LTR30 LTR ERV1 0 722 3 294 50 0 0 chr6 74661491 74661531 -107753711 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4681 212 53 21 chr6 74662270 74663883 -107751359 + L1MC1 LINE L1 4648 6315 -18 22 35 0 0 chr6 74664531 74664560 -107750682 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr6 74664791 74664838 -107750404 + AT_rich Low_complexity Low_complexity 1 47 0 4004 201 21 27 chr6 74666046 74667080 -107748162 - L1MA7 LINE L1 -1335 4811 3829 1021 192 5 10 chr6 74667077 74667275 -107747967 + L1MA7 LINE L1 4811 5007 -1139 * 2711 137 8 0 chr6 74667277 74667970 -107747272 - L1PA14 LINE L1 -500 5661 4963 3132 131 4 0 chr6 74667970 74668467 -107746775 + L1PA14 LINE L1 5662 6161 0 4549 205 21 16 chr6 74668468 74669132 -107746110 + L1MA7 LINE L1 5002 5671 -620 2200 124 0 0 chr6 74669132 74669431 -107745811 + AluSx SINE Alu 3 301 -11 4549 205 21 16 chr6 74669431 74670045 -107745197 + L1MA7 LINE L1 5671 6280 -11 4486 212 12 10 chr6 74670765 74671722 -107743520 - L1MC2 LINE L1 -11 6333 5375 250 183 17 17 chr6 74671761 74671821 -107743421 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 509 107 29 29 chr6 74671824 74671964 -107743278 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 577 271 56 32 chr6 74671964 74672304 -107742938 - L1MC2 LINE L1 -783 5363 5016 594 282 25 0 chr6 74672548 74672750 -107742492 - L1MC2 LINE L1 -1121 5025 4819 24 32 0 0 chr6 74673594 74673625 -107741617 + AT_rich Low_complexity Low_complexity 1 31 0 24 100 0 0 chr6 74675942 74676022 -107739220 + AT_rich Low_complexity Low_complexity 1 80 0 303 49 0 0 chr6 74676504 74676545 -107738697 + (CA)n Simple_repeat Simple_repeat 2 42 0 6797 85 4 1 chr6 74676827 74678086 -107737156 - L1PA7 LINE L1 -487 5685 4423 3623 75 2 0 chr6 74678086 74678552 -107736690 + L1PA7 LINE L1 5686 6154 0 653 284 65 10 chr6 74678717 74678918 -107736324 + MIR SINE MIR 2 213 -49 183 243 0 0 chr6 74678950 74678987 -107736255 + MIR SINE MIR 213 249 -13 23 0 0 0 chr6 74679492 74679515 -107735727 + AT_rich Low_complexity Low_complexity 1 23 0 273 346 94 8 chr6 74679815 74679942 -107735300 - LTR67 LTR ERVL -297 260 123 25 31 0 0 chr6 74680744 74680776 -107734466 + AT_rich Low_complexity Low_complexity 1 32 0 440 173 0 73 chr6 74680916 74681026 -107734216 - L1PA8 LINE L1 -2 6170 6069 358 71 0 0 chr6 74681044 74681100 -107734142 + L1MA3 LINE L1 6250 6305 0 22 0 0 0 chr6 74681267 74681289 -107733953 + AT_rich Low_complexity Low_complexity 1 22 0 205 211 0 0 chr6 74681313 74681351 -107733891 + A-rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr6 74681749 74681778 -107733464 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 74681843 74681864 -107733378 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 74682664 74682689 -107732553 + AT_rich Low_complexity Low_complexity 1 25 0 255 275 148 6 chr6 74683120 74683302 -107731940 + L1 LINE L1 4390 4597 -1549 262 286 9 19 chr6 74683493 74683598 -107731644 + L1 LINE L1 4733 4836 -1310 1889 62 147 0 chr6 74683667 74683925 -107731317 + AluY SINE Alu 1 296 -15 1024 196 63 81 chr6 74684272 74684654 -107730588 + L1ME2 LINE L1 5781 6155 -9 1767 182 16 3 chr6 74684991 74685299 -107729943 + AluJb SINE Alu 1 312 0 256 286 0 0 chr6 74685737 74685800 -107729442 + CT-rich Low_complexity Low_complexity 4 66 0 306 193 132 61 chr6 74685961 74686075 -107729167 - HAL1 LINE L1 -1570 937 816 2181 117 0 0 chr6 74686236 74686543 -107728699 + AluSg SINE Alu 1 307 -3 306 314 44 25 chr6 74687167 74687326 -107727916 + MIR SINE MIR 91 252 -10 193 296 0 0 chr6 74688056 74688100 -107727142 - MIR3 SINE MIR -11 197 154 470 319 40 47 chr6 74688753 74689051 -107726191 + MLT1I LTR MaLR 64 359 -50 28 61 0 0 chr6 74689660 74689709 -107725533 + AT_rich Low_complexity Low_complexity 1 49 0 465 235 0 10 chr6 74690117 74690215 -107725027 - L2 LINE L2 -1 3312 3216 7008 160 25 17 chr6 74690729 74691823 -107723419 + HSMAR2 DNA Mariner 2 1109 -193 449 55 11 132 chr6 74691823 74691861 -107723381 + MADE1 DNA Mariner 1 23 -57 2061 104 7 13 chr6 74691861 74692159 -107723083 - AluSx SINE Alu -16 296 1 449 55 11 132 chr6 74692159 74692211 -107723031 + MADE1 DNA Mariner 23 80 0 7008 160 25 17 chr6 74692211 74692407 -107722835 + HSMAR2 DNA Mariner 1109 1302 0 272 284 0 0 chr6 74692445 74692512 -107722730 + GA-rich Low_complexity Low_complexity 2 68 0 2016 138 6 6 chr6 74692591 74692903 -107722339 - AluSx SINE Alu 0 312 1 186 43 0 0 chr6 74692908 74692931 -107722311 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1595 195 53 3 chr6 74694103 74694426 -107720816 + MER44D DNA MER2_type 1 609 0 369 0 0 0 chr6 74694685 74694726 -107720516 + (CA)n Simple_repeat Simple_repeat 2 42 0 300 364 54 8 chr6 74696476 74696605 -107718637 - MIR3 SINE MIR -7 201 67 24 32 0 0 chr6 74697032 74697063 -107718179 + AT_rich Low_complexity Low_complexity 1 31 0 864 196 0 73 chr6 74697101 74697156 -107718086 - MER3 DNA MER1_type -10 199 142 2013 144 3 0 chr6 74697156 74697454 -107717788 + AluSx SINE Alu 1 299 -13 864 196 0 73 chr6 74697454 74697602 -107717640 - MER3 DNA MER1_type -67 142 11 207 286 119 0 chr6 74697618 74697702 -107717540 - MIR SINE MIR -110 152 59 763 239 27 40 chr6 74700445 74700667 -107714575 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr6 74700676 74700704 -107714538 + AT_rich Low_complexity Low_complexity 1 28 0 294 269 11 11 chr6 74700776 74700869 -107714373 + (CATATA)n Simple_repeat Simple_repeat 4 96 0 2305 99 3 0 chr6 74701541 74701844 -107713398 + AluSx SINE Alu 2 305 -7 25 31 0 0 chr6 74702265 74702297 -107712945 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr6 74702522 74702548 -107712694 + AT_rich Low_complexity Low_complexity 1 26 0 2603 52 0 0 chr6 74702925 74703234 -107712008 + AluY SINE Alu 1 309 -2 27 62 0 0 chr6 74703443 74703491 -107711751 + AT_rich Low_complexity Low_complexity 1 48 0 363 313 86 70 chr6 74703512 74703677 -107711565 + L1M4 LINE L1 2869 3030 -3116 2249 90 10 13 chr6 74703677 74703976 -107711266 + AluSc SINE Alu 1 298 -11 363 313 86 70 chr6 74703976 74704261 -107710981 + L1M4 LINE L1 3030 3330 -2816 2182 114 0 7 chr6 74704261 74704559 -107710683 + AluSp SINE Alu 1 296 -17 363 313 86 70 chr6 74704559 74704609 -107710633 + L1M4 LINE L1 3330 3378 -2768 2007 113 0 38 chr6 74705012 74705339 -107709903 + AluSx SINE Alu 3 318 0 2532 115 0 8 chr6 74705837 74706202 -107709040 - THE1B LTR MaLR 0 364 3 9388 129 10 73 chr6 74706204 74707887 -107707355 - THE1B-int LTR MaLR 0 1580 4 2574 112 0 8 chr6 74707890 74708257 -107706985 - THE1B LTR MaLR 0 364 1 417 315 9 0 chr6 74708287 74708395 -107706847 + MER58A DNA MER1_type 1 109 0 262 318 82 9 chr6 74708426 74708536 -107706706 - MIR3 SINE MIR -18 190 73 26 64 0 0 chr6 74709430 74709477 -107705765 + AT_rich Low_complexity Low_complexity 1 47 0 310 315 15 15 chr6 74710068 74710198 -107705044 - MER94 DNA DNA -4 130 1 204 231 45 8 chr6 74711088 74711222 -107704020 + (TA)n Simple_repeat Simple_repeat 1 139 0 5772 146 23 2 chr6 74711272 74712196 -107703046 - L1PA12 LINE L1 -4975 2606 1664 1442 373 27 26 chr6 74712206 74713013 -107702229 - L1M4c LINE L1 -4646 2000 1193 581 305 45 101 chr6 74713016 74713551 -107701691 - L1M4c LINE L1 -5534 1008 504 2169 107 7 10 chr6 74713881 74714191 -107701051 - AluY SINE Alu 0 311 3 248 304 40 7 chr6 74714212 74714360 -107700882 - L1M4c LINE L1 -6376 166 14 21 57 0 0 chr6 74714639 74714674 -107700568 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 74714803 74714824 -107700418 + AT_rich Low_complexity Low_complexity 1 21 0 11548 196 17 4 chr6 74714842 74717445 -107697797 - L1MA2 LINE L1 0 7723 5155 195 42 0 0 chr6 74717445 74717469 -107697773 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 11548 196 17 4 chr6 74717469 74718256 -107696986 - L1MA2 LINE L1 -2568 5155 4280 2380 82 0 19 chr6 74718256 74718572 -107696670 - AluY SINE Alu -1 310 1 11548 196 17 4 chr6 74718572 74718802 -107696440 - L1MA2 LINE L1 -3443 4280 4054 2026 209 36 81 chr6 74718802 74719382 -107695860 - MLT2B3 LTR ERVL 0 554 1 33801 163 14 10 chr6 74719382 74725009 -107690233 - HERVL-B3 LTR ERVL 0 5654 1 1556 260 25 83 chr6 74725009 74725069 -107690173 - MLT2B3 LTR ERVL 0 554 492 2781 176 31 48 chr6 74725069 74725690 -107689552 + LTR9 LTR ERV1 3 612 0 1556 260 25 83 chr6 74725690 74726217 -107689025 - MLT2B3 LTR ERVL -62 492 1 639 198 107 5 chr6 74726217 74726404 -107688838 - L1MA2 LINE L1 -3507 4058 3853 2171 167 20 62 chr6 74726405 74726885 -107688357 + LTR3 LTR ERVK 1 429 -3 12523 170 21 14 chr6 74726924 74727888 -107687354 - L1MA2 LINE L1 -3708 3857 2901 2377 88 0 0 chr6 74727888 74728194 -107687048 + AluY SINE Alu 1 306 -5 12523 170 21 14 chr6 74728194 74730966 -107684276 - L1MA2 LINE L1 -4664 2901 94 276 30 0 0 chr6 74730966 74730999 -107684243 + (TG)n Simple_repeat Simple_repeat 2 34 0 12523 170 21 14 chr6 74730999 74731020 -107684222 - L1MA2 LINE L1 -7471 94 75 4808 141 51 4 chr6 74731005 74731852 -107683390 - L1PA13 LINE L1 -2 7580 17 * 675 294 37 0 chr6 74732385 74732572 -107682670 + MIR SINE MIR 18 211 -51 23 54 0 0 chr6 74732586 74732623 -107682619 + AT_rich Low_complexity Low_complexity 1 37 0 212 83 0 28 chr6 74732630 74732666 -107682576 + (CAT)n Simple_repeat Simple_repeat 2 36 0 263 71 24 0 chr6 74733236 74733278 -107681964 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr6 74733901 74733923 -107681319 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 74734186 74734208 -107681034 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr6 74734236 74734272 -107680970 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr6 74735413 74735450 -107679792 + AT_rich Low_complexity Low_complexity 1 37 0 1598 244 108 53 chr6 74735880 74736979 -107678263 + L1MCb LINE L1 570 1607 -4957 2232 100 0 28 chr6 74736979 74737299 -107677943 + AluY SINE Alu 1 311 0 1598 244 108 53 chr6 74737299 74737367 -107677875 + L1MCb LINE L1 1607 1670 -4894 1565 194 137 58 chr6 74737367 74737665 -107677577 - MLT1D LTR MaLR 0 505 155 1850 133 8 0 chr6 74737665 74737928 -107677314 + AluSq SINE Alu 37 301 -12 1565 194 137 58 chr6 74737928 74738097 -107677145 - MLT1D LTR MaLR -350 155 1 1598 244 108 53 chr6 74738097 74738169 -107677073 + L1MCb LINE L1 1670 1976 -4588 1901 261 14 47 chr6 74738169 74738281 -107676961 + MER70B LTR ERVL 2 116 -462 4634 77 2 14 chr6 74738281 74738757 -107676485 - L1PA7 LINE L1 0 6154 5686 2119 115 7 10 chr6 74738757 74739061 -107676181 - AluSp SINE Alu -10 303 1 4634 77 2 14 chr6 74739061 74739221 -107676021 - L1PA7 LINE L1 -468 5686 5526 1901 261 14 47 chr6 74739221 74739599 -107675643 + MER70B LTR ERVL 116 476 -102 226 94 0 0 chr6 74739597 74739629 -107675613 + MER70A LTR ERVL 441 472 0 * 480 273 116 31 chr6 74739629 74740244 -107674998 + L1MCb LINE L1 1979 2861 -3703 27 29 0 0 chr6 74741009 74741043 -107674199 + AT_rich Low_complexity Low_complexity 1 34 0 689 65 0 0 chr6 74741043 74741135 -107674107 - L1MA1 LINE L1 -3 6299 6208 1170 282 100 33 chr6 74741359 74741909 -107673333 + MLT1E LTR MaLR 7 593 0 1662 201 34 11 chr6 74741954 74742312 -107672930 + MER47A DNA MER2_type 1 366 0 23 33 0 0 chr6 74742824 74742854 -107672388 + AT_rich Low_complexity Low_complexity 1 30 0 1529 139 18 115 chr6 74742864 74743203 -107672039 + AluSx SINE Alu 4 309 -3 1912 156 85 15 chr6 74744817 74745157 -107670085 + THE1B LTR MaLR 1 364 0 11263 103 6 0 chr6 74745159 74746725 -107668517 + THE1B-int LTR MaLR 3 1578 -2 1892 158 76 9 chr6 74746727 74747068 -107668174 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr6 74747267 74747291 -107667951 + AT_rich Low_complexity Low_complexity 1 24 0 189 121 0 0 chr6 74747291 74747324 -107667918 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr6 74747902 74747923 -107667319 + AT_rich Low_complexity Low_complexity 1 21 0 1213 47 0 0 chr6 74747923 74748073 -107667169 - L1PA7 LINE L1 0 6154 6005 23 54 0 0 chr6 74748464 74748501 -107666741 + AT_rich Low_complexity Low_complexity 1 37 0 2256 78 0 16 chr6 74748943 74749250 -107665992 - AluY SINE Alu -9 302 1 21 0 0 0 chr6 74750183 74750204 -107665038 + AT_rich Low_complexity Low_complexity 1 21 0 206 62 31 0 chr6 74752774 74752806 -107662436 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 32 0 0 0 chr6 74752806 74752838 -107662404 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 74754095 74754124 -107661118 + AT_rich Low_complexity Low_complexity 1 29 0 1736 167 0 19 chr6 74754654 74754978 -107660264 - L1PA16 LINE L1 -6 6160 5843 261 57 0 0 chr6 74756203 74756238 -107659004 + (CAA)n Simple_repeat Simple_repeat 3 37 0 206 286 0 29 chr6 74756336 74756406 -107658836 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 21 0 0 0 chr6 74757791 74757812 -107657430 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 74757900 74757922 -107657320 + AT_rich Low_complexity Low_complexity 1 22 0 2454 161 7 25 chr6 74757947 74758383 -107656859 + MSTA LTR MaLR 1 428 0 204 40 0 0 chr6 74758423 74758448 -107656794 + (A)n Simple_repeat Simple_repeat 1 25 0 3928 137 23 24 chr6 74758512 74759221 -107656021 + L1PA16 LINE L1 5450 6157 -9 285 29 0 0 chr6 74760445 74760479 -107654763 + (TC)n Simple_repeat Simple_repeat 1 34 0 1605 195 3 17 chr6 74760748 74761046 -107654196 + AluJo SINE Alu 4 297 -15 7380 28 3 0 chr6 74761226 74762114 -107653128 - L1PA3 LINE L1 0 6155 5263 380 257 20 0 chr6 74762337 74762438 -107652804 - MLT1I LTR MaLR -13 396 294 424 269 66 46 chr6 74762477 74762674 -107652568 - MLT1I LTR MaLR -208 201 1 1524 194 34 7 chr6 74762762 74763056 -107652186 + MER1B DNA MER1_type 38 339 0 906 208 145 24 chr6 74763103 74763434 -107651808 + Charlie1b DNA MER1_type 2 386 -137 695 335 18 5 chr6 74763436 74763654 -107651588 + LTR16A LTR ERVL 220 440 -10 789 341 77 3 chr6 74763663 74764012 -107651230 + HERV16 LTR ERVL 1 375 -4621 654 349 61 16 chr6 74764239 74764552 -107650690 + HERV16 LTR ERVL 2443 2806 -2306 1143 201 41 108 chr6 74764555 74764681 -107650561 + L1ME2 LINE L1 5112 5245 -921 216 0 0 0 chr6 74764681 74764705 -107650537 + (CA)n Simple_repeat Simple_repeat 1 24 0 1143 201 41 108 chr6 74764705 74765093 -107650149 + L1ME2 LINE L1 5245 5586 -580 1910 189 60 29 chr6 74765093 74765542 -107649700 - LTR2B LTR ERV1 0 490 28 1854 208 39 90 chr6 74765588 74766237 -107649005 - LTR6A LTR ERV1 0 564 1 1246 249 59 49 chr6 74766350 74766840 -107648402 + L1ME2 LINE L1 5661 6155 -9 487 254 101 48 chr6 74767067 74767276 -107647966 - MIR SINE MIR -12 250 31 276 273 51 91 chr6 74767931 74768107 -107647135 + MIR SINE MIR 43 211 -51 1581 146 8 23 chr6 74768886 74769147 -107646095 - LTR51 LTR ERV1 -412 259 3 1835 176 11 34 chr6 74769197 74769550 -107645692 - Tigger2a DNA MER2_type -87 347 3 297 109 0 0 chr6 74770496 74770551 -107644691 + (CA)n Simple_repeat Simple_repeat 2 56 0 385 347 89 51 chr6 74771504 74772244 -107642998 - L2 LINE L2 -1396 1918 1151 297 231 103 43 chr6 74772347 74772464 -107642778 + MER94 DNA DNA 3 126 -8 191 335 143 28 chr6 74772814 74772996 -107642246 - L2 LINE L2 -2651 663 461 729 292 64 0 chr6 74775032 74775203 -107640039 + MER5A DNA MER1_type 2 183 -6 25 51 0 0 chr6 74775451 74775490 -107639752 + AT_rich Low_complexity Low_complexity 1 39 0 1396 226 7 7 chr6 74775916 74776204 -107639038 - AluJo SINE Alu -24 288 1 300 284 0 0 chr6 74776215 74776282 -107638960 - L2 LINE L2 -1 3271 3205 1271 229 72 7 chr6 74776381 74776674 -107638568 + AluJo SINE Alu 1 312 0 21 82 0 0 chr6 74776960 74777009 -107638233 + AT_rich Low_complexity Low_complexity 1 49 0 448 344 32 16 chr6 74777508 74777755 -107637487 + MIR SINE MIR 2 252 -10 924 303 139 29 chr6 74777870 74778359 -107636883 + MLT1E LTR MaLR 1 543 -50 486 137 250 24 chr6 74778376 74778500 -107636742 - MER4C LTR ERV1 -18 447 296 1282 187 47 47 chr6 74778649 74778991 -107636251 - MER4A LTR ERV1 -322 342 1 248 232 0 0 chr6 74778992 74779048 -107636194 + MLT1E LTR MaLR 512 567 0 885 344 25 10 chr6 74779181 74779585 -107635657 + L1PA16 LINE L1 6 415 -7166 1591 26 5 0 chr6 74780368 74780561 -107634681 - L1PA4 LINE L1 -1035 5111 4918 7042 34 35 0 chr6 74780562 74781581 -107633661 + L1PA4 LINE L1 5098 6146 -9 11179 227 59 17 chr6 74781659 74786747 -107628495 + L1PA16 LINE L1 2231 7594 -10 270 143 0 0 chr6 74786747 74786796 -107628446 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 40 59 0 0 chr6 74787017 74787085 -107628157 + AT_rich Low_complexity Low_complexity 1 68 0 345 174 0 0 chr6 74788414 74788483 -107626759 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 225 0 0 0 chr6 74788971 74788996 -107626246 + (TA)n Simple_repeat Simple_repeat 1 25 0 207 146 0 0 chr6 74789147 74789188 -107626054 + (TA)n Simple_repeat Simple_repeat 1 41 0 11505 137 11 40 chr6 74790173 74793042 -107622200 + L1P3 LINE L1 8 2854 -3607 7443 38 0 0 chr6 74793042 74794187 -107621055 + L1PA4 LINE L1 5003 6147 -8 1038 138 152 32 chr6 74794194 74794411 -107620831 + MSTA LTR MaLR 186 428 0 1671 207 0 6 chr6 74794900 74795214 -107620028 - AluJb SINE Alu 0 312 1 285 278 22 22 chr6 74795582 74795672 -107619570 + L2 LINE L2 717 806 -2508 489 194 20 0 chr6 74795739 74795837 -107619405 + MER58 DNA MER1_type 2318 2417 -3 316 410 16 5 chr6 74795837 74796027 -107619215 + L2 LINE L2 800 991 -2323 413 292 172 5 chr6 74796295 74796504 -107618738 - MIR SINE MIR -13 249 6 9247 100 16 4 chr6 74797852 74798525 -107616717 - L1PA7 LINE L1 0 6154 5490 2432 11 0 4 chr6 74798525 74798796 -107616446 - AluYa5 SINE Alu -15 296 27 9247 100 16 4 chr6 74798796 74800290 -107614952 - L1PA7 LINE L1 -664 5490 3974 15704 143 18 109 chr6 74800290 74803127 -107612115 - L1PA7 LINE L1 -2795 3351 922 2137 119 3 0 chr6 74803127 74803449 -107611793 - AluSq SINE Alu 0 323 1 15704 143 18 109 chr6 74803449 74804284 -107610958 - L1PA7 LINE L1 -5224 922 12 612 263 110 24 chr6 74804319 74804528 -107610714 - MIR SINE MIR -4 258 32 24 85 0 0 chr6 74805057 74805116 -107610126 + AT_rich Low_complexity Low_complexity 1 59 0 2056 145 39 31 chr6 74805147 74805505 -107609737 - THE1B LTR MaLR -3 361 1 197 86 57 0 chr6 74806795 74806830 -107608412 + (TATG)n Simple_repeat Simple_repeat 2 38 0 229 26 53 0 chr6 74806838 74806876 -107608366 + (TA)n Simple_repeat Simple_repeat 1 40 0 250 26 51 0 chr6 74807208 74807247 -107607995 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 210 217 11 22 chr6 74807393 74807485 -107607757 + GA-rich Low_complexity Low_complexity 2 92 0 374 324 123 31 chr6 74807682 74807975 -107607267 - LTR16A LTR ERVL -123 327 8 21 36 0 0 chr6 74808263 74808291 -107606951 + AT_rich Low_complexity Low_complexity 1 28 0 1226 203 109 35 chr6 74808619 74809086 -107606156 - MER39 LTR ERV1 -1 706 5 288 377 73 39 chr6 74809261 74809643 -107605599 - L2 LINE L2 -23 3290 2896 259 189 0 0 chr6 74809647 74809700 -107605542 - Charlie5 DNA MER1_type 0 2617 2565 337 275 116 88 chr6 74809805 74809903 -107605339 - L2 LINE L2 -773 2541 2447 207 0 0 0 chr6 74809903 74809926 -107605316 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 337 275 116 88 chr6 74809926 74810223 -107605019 - L2 LINE L2 -867 2447 2135 411 289 50 28 chr6 74810282 74810462 -107604780 - L2 LINE L2 -1425 1889 1706 251 354 37 31 chr6 74810879 74811040 -107604202 + Tigger8 DNA MER2_type 3 164 -502 328 283 80 43 chr6 74811370 74811508 -107603734 - MIR SINE MIR -103 159 17 265 293 20 50 chr6 74812350 74812449 -107602793 - L2 LINE L2 0 3272 3177 25 31 0 0 chr6 74812994 74813026 -107602216 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 74813195 74813217 -107602025 + AT_rich Low_complexity Low_complexity 1 22 0 236 340 57 0 chr6 74814885 74814991 -107600251 - MIR SINE MIR -48 214 103 253 333 0 11 chr6 74815091 74815181 -107600061 + A-rich Low_complexity Low_complexity 4 92 0 22 0 0 0 chr6 74816143 74816165 -107599077 + AT_rich Low_complexity Low_complexity 1 22 0 509 343 101 33 chr6 74818223 74818439 -107596803 + MLT1K LTR MaLR 99 299 -289 846 42 66 6 chr6 74818439 74818605 -107596637 + (TA)n Simple_repeat Simple_repeat 1 176 0 509 343 101 33 chr6 74818605 74818843 -107596399 + MLT1K LTR MaLR 299 584 -4 219 139 0 0 chr6 74819073 74819109 -107596133 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 657 224 23 6 chr6 74819424 74819598 -107595644 + MER96B DNA MER1_type? 1 177 -240 3667 36 2 0 chr6 74821000 74821443 -107593799 + L1PA3 LINE L1 5709 6152 -3 379 348 147 0 chr6 74821550 74821754 -107593488 - MIR SINE MIR -10 252 19 353 278 32 24 chr6 74823160 74823286 -107591956 - MIR SINE MIR -87 175 49 232 296 56 14 chr6 74825436 74825578 -107589664 - L1MDa LINE L1 -4538 2002 1855 21 36 0 0 chr6 74825646 74825674 -107589568 + AT_rich Low_complexity Low_complexity 1 28 0 377 383 88 34 chr6 74825734 74826277 -107588965 + L2 LINE L2 2687 3264 -8 27 29 0 0 chr6 74826633 74826667 -107588575 + AT_rich Low_complexity Low_complexity 1 34 0 209 291 81 12 chr6 74826988 74827074 -107588168 - L2 LINE L2 0 3313 3222 413 242 113 113 chr6 74827240 74827471 -107587771 + MLT1G3 LTR MaLR 151 456 -139 234 0 0 0 chr6 74827795 74827821 -107587421 + (TA)n Simple_repeat Simple_repeat 1 26 0 2390 62 0 55 chr6 74827934 74828259 -107586983 + AluY SINE Alu 1 307 -4 243 238 0 62 chr6 74829594 74829674 -107585568 - MLT1K LTR MaLR -17 571 497 315 0 0 0 chr6 74830037 74830072 -107585170 + (CA)n Simple_repeat Simple_repeat 2 36 0 1040 226 24 24 chr6 74830296 74830544 -107584698 + MIR SINE MIR 12 259 -3 687 230 79 0 chr6 74831536 74831714 -107583528 - LTR33A LTR ERVL -4 519 328 350 241 102 9 chr6 74831736 74831844 -107583398 - LTR33A LTR ERVL -405 118 1 297 325 40 16 chr6 74831896 74832022 -107583220 + MER5A DNA MER1_type 15 143 -46 192 214 29 86 chr6 74834236 74834306 -107580936 + L2 LINE L2 3205 3270 -2 405 256 201 9 chr6 74834516 74834735 -107580507 - L1MC/D LINE L1 -2208 5600 5340 1013 160 11 5 chr6 74834969 74835157 -107580085 - L1PB2 LINE L1 0 6867 6679 1553 141 8 0 chr6 74835157 74835406 -107579836 + L1P5 LINE L1 5412 5662 -489 4941 178 8 28 chr6 74835406 74837235 -107578007 - L1PB2 LINE L1 -186 6681 4898 * 15257 172 48 18 chr6 74837232 74841043 -107574199 - L1PB2 LINE L1 -2931 3931 6 1986 145 92 15 chr6 74841213 74841551 -107573691 + THE1B LTR MaLR 1 364 0 597 262 41 121 chr6 74841760 74842123 -107573119 - LTR16C LTR ERVL 0 491 158 1343 217 0 0 chr6 74842575 74842833 -107572409 + MLT2C1 LTR ERVL 1 258 -139 2237 200 69 34 chr6 74842864 74843445 -107571797 - MER7C DNA MER2_type -1 601 1 226 220 0 0 chr6 74843455 74843514 -107571728 + L1MC4 LINE L1 6637 6695 -1347 2359 105 33 25 chr6 74843793 74844154 -107571088 - THE1B LTR MaLR 0 364 1 10843 117 8 1 chr6 74844154 74845723 -107569519 - THE1B-int LTR MaLR 0 1580 1 468 165 30 20 chr6 74845723 74845821 -107569421 - THE1B LTR MaLR 0 355 281 1784 122 11 32 chr6 74846054 74846332 -107568910 - THE1B LTR MaLR -92 272 1 561 103 0 0 chr6 74846551 74846629 -107568613 + MADE1 DNA Mariner 1 78 -2 250 321 60 101 chr6 74846782 74847168 -107568074 - MLT1I LTR MaLR -6 403 34 252 266 0 89 chr6 74848339 74848418 -107566824 - L2 LINE L2 -6 3266 3195 21 0 0 0 chr6 74848661 74848682 -107566560 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 74849884 74849906 -107565336 + AT_rich Low_complexity Low_complexity 1 22 0 36 33 0 16 chr6 74850692 74850722 -107564520 + AT_rich Low_complexity Low_complexity 1 30 -30 1865 127 0 0 chr6 74850722 74850975 -107564267 + AluSg SINE Alu 21 273 -37 36 33 0 16 chr6 74850975 74851005 -107564237 + AT_rich Low_complexity Low_complexity 30 60 0 1909 244 30 2 chr6 74851046 74851550 -107563692 + L1M2 LINE L1 4759 5276 -870 763 109 9 0 chr6 74851563 74851673 -107563569 + THE1C LTR MaLR 1 111 -264 1496 147 35 28 chr6 74851782 74852067 -107563175 + THE1C LTR MaLR 89 375 0 1673 199 82 44 chr6 74852072 74852552 -107562690 + L1M2 LINE L1 5292 5789 -523 715 128 0 0 chr6 74852555 74852664 -107562578 - MLT2A2 LTR ERVL -344 109 1 3605 189 11 30 chr6 74853635 74854510 -107560732 - L1 LINE L1 -1399 4747 3889 33 43 0 0 chr6 74854560 74854607 -107560635 + AT_rich Low_complexity Low_complexity 1 47 0 268 242 44 0 chr6 74855627 74855718 -107559524 - L1MA9 LINE L1 0 6312 6218 421 94 16 0 chr6 74855729 74855793 -107559449 - L1MA9 LINE L1 -188 6124 6060 * 841 179 15 11 chr6 74855788 74855975 -107559267 - L1MA9 LINE L1 -171 6000 5815 1278 170 18 0 chr6 74855976 74856194 -107559048 + L1M2 LINE L1 5509 5730 -582 2207 105 3 7 chr6 74856349 74856653 -107558589 - AluSq SINE Alu -10 303 1 21 0 0 0 chr6 74856831 74856852 -107558390 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 74857159 74857185 -107558057 + AT_rich Low_complexity Low_complexity 1 26 0 514 130 10 10 chr6 74857837 74857937 -107557305 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 1994 205 43 49 chr6 74858144 74858652 -107556590 - MLT1D LTR MaLR 0 505 1 366 374 53 18 chr6 74858960 74859131 -107556111 + MER5B DNA MER1_type 2 178 0 22 0 0 0 chr6 74859334 74859356 -107555886 + AT_rich Low_complexity Low_complexity 1 22 0 2069 85 25 3 chr6 74861123 74861406 -107553836 + AluSc SINE Alu 1 289 -20 805 289 56 77 chr6 74861725 74862179 -107553063 + MLT1F1 LTR MaLR 1 500 -93 315 0 0 0 chr6 74862180 74862215 -107553027 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 5517 105 61 8 chr6 74862215 74863147 -107552095 - L1PA10 LINE L1 -21 6147 5166 482 180 20 0 chr6 74863147 74863247 -107551995 + MLT1F LTR MaLR 441 542 0 229 277 12 24 chr6 74863248 74863331 -107551911 + MIR SINE MIR 80 161 -101 204 121 30 0 chr6 74863696 74863729 -107551513 + GA-rich Low_complexity Low_complexity 2 35 0 6471 200 20 40 chr6 74863894 74865941 -107549301 + L1M1 LINE L1 16 2696 -4869 * 9364 197 30 10 chr6 74865926 74867807 -107547435 + L1M1 LINE L1 3711 5642 -1923 1870 181 0 0 chr6 74867807 74868105 -107547137 - AluSx SINE Alu -14 298 1 9364 197 30 10 chr6 74868105 74868365 -107546877 + L1M1 LINE L1 5642 5895 -1670 * 42945 48 1 6 chr6 74868361 74874575 -107540667 + L1PA3 LINE L1 2 6186 0 242 288 81 75 chr6 74874581 74874888 -107540354 - MLT1I LTR MaLR -42 367 70 358 246 31 15 chr6 74875647 74875777 -107539465 + (TA)n Simple_repeat Simple_repeat 1 132 0 299 317 108 6 chr6 74876732 74876899 -107538343 + MIR SINE MIR 17 200 -62 5625 202 59 17 chr6 74876905 74878117 -107537125 + L1MA1 LINE L1 24 1286 -6279 * 5808 170 12 40 chr6 74878112 74878945 -107536297 - L1P LINE L1 -2184 3962 3172 297 0 0 0 chr6 74878945 74878978 -107536264 + (TG)n Simple_repeat Simple_repeat 2 34 0 5808 170 12 40 chr6 74878978 74879355 -107535887 - L1P LINE L1 -2974 3172 2786 7242 173 8 8 chr6 74879358 74881534 -107533708 + L1PA11 LINE L1 3969 6166 -8 12962 174 29 14 chr6 74881553 74884125 -107531117 + L1MA1 LINE L1 1273 3879 -3686 * 20937 107 12 4 chr6 74884121 74888098 -107527144 - L1PA7 LINE L1 -2 6152 2143 12498 184 23 6 chr6 74888106 74891393 -107523849 + L1MA1 LINE L1 4043 7377 -344 297 0 0 0 chr6 74892509 74892578 -107522664 + L1PA2 LINE L1 6109 6177 0 21 57 0 0 chr6 74892803 74892838 -107522404 + AT_rich Low_complexity Low_complexity 1 35 0 237 371 71 0 chr6 74892933 74893103 -107522139 - MIR SINE MIR -40 222 41 182 150 25 0 chr6 74893107 74893147 -107522095 + (TA)n Simple_repeat Simple_repeat 2 42 0 271 164 15 15 chr6 74893621 74893688 -107521554 + (TA)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr6 74894018 74894039 -107521203 + AT_rich Low_complexity Low_complexity 1 21 0 955 272 73 23 chr6 74895285 74895741 -107519501 - MLT1E LTR MaLR 0 593 20 181 371 0 0 chr6 74895838 74895900 -107519342 - L2 LINE L2 -557 2757 2696 220 377 45 26 chr6 74896049 74896203 -107519039 - MIR SINE MIR -58 204 48 22 88 0 0 chr6 74896652 74896709 -107518533 + AT_rich Low_complexity Low_complexity 1 57 0 37 39 0 0 chr6 74896742 74896793 -107518449 + AT_rich Low_complexity Low_complexity 1 51 0 27 92 0 0 chr6 74896965 74897041 -107518201 + AT_rich Low_complexity Low_complexity 1 76 0 188 253 13 0 chr6 74898735 74898810 -107516432 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 34 24 0 0 chr6 74899220 74899261 -107515981 + AT_rich Low_complexity Low_complexity 1 41 0 242 176 33 11 chr6 74899367 74899458 -107515784 + (TA)n Simple_repeat Simple_repeat 1 93 0 315 170 0 32 chr6 74899519 74899613 -107515629 + (TA)n Simple_repeat Simple_repeat 2 92 0 557 245 79 22 chr6 74899655 74899794 -107515448 - FRAM SINE Alu -30 146 1 180 219 0 0 chr6 74899995 74900036 -107515206 + (ATG)n Simple_repeat Simple_repeat 2 42 0 315 270 146 0 chr6 74900049 74900186 -107515056 - MIR SINE MIR -11 251 95 228 356 141 0 chr6 74900490 74900667 -107514575 + MIR SINE MIR 58 259 -3 1552 267 47 74 chr6 74902378 74903307 -107511935 - L1MA10 LINE L1 -3 6331 5428 * 2479 215 16 62 chr6 74902715 74903339 -107511903 - L1MA5 LINE L1 -283 6017 5366 194 61 0 30 chr6 74903339 74903372 -107511870 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1329 208 42 28 chr6 74903375 74903663 -107511579 - AluJo SINE Alu -20 292 1 2479 215 16 62 chr6 74903663 74903944 -107511298 - L1MA5 LINE L1 -936 5364 5159 488 336 60 54 chr6 74904213 74904549 -107510693 + MLT1I LTR MaLR 6 343 -66 2159 217 109 99 chr6 74904567 74905544 -107509698 - L1MA4A LINE L1 0 6303 5317 198 0 0 0 chr6 74905545 74905567 -107509675 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1231 49 0 12 chr6 74905567 74905731 -107509511 - L1PA4 LINE L1 -18 6137 5976 22 35 0 0 chr6 74906496 74906525 -107508717 + AT_rich Low_complexity Low_complexity 1 29 0 284 75 25 0 chr6 74906529 74906569 -107508673 - L1PA16 LINE L1 -24 6142 6102 250 269 134 8 chr6 74906800 74906919 -107508323 + MIR SINE MIR 79 212 -50 8616 209 47 6 chr6 74907280 74909335 -107505907 - L1MA4A LINE L1 -1461 4685 2547 225 0 0 0 chr6 74909460 74909485 -107505757 + (A)n Simple_repeat Simple_repeat 1 25 0 758 296 153 18 chr6 74909791 74910132 -107505110 + MLT1I LTR MaLR 3 389 -20 5365 149 40 15 chr6 74910193 74911603 -107503639 - L1MA4A LINE L1 -11 6292 4853 636 92 0 37 chr6 74911906 74912015 -107503227 - AluSg/x SINE Alu 0 309 205 213 175 25 0 chr6 74912210 74912250 -107502992 + (TA)n Simple_repeat Simple_repeat 1 41 0 408 263 62 33 chr6 74912257 74912537 -107502705 + L1M4 LINE L1 1518 1917 -4727 6952 41 0 0 chr6 74912541 74913412 -107501830 - L1P LINE L1 -2345 3801 2931 * 12131 34 0 1 chr6 74913402 74914864 -107500378 + L1P LINE L1 3799 5259 -887 926 33 0 8 chr6 74914964 74915085 -107500157 - L1PA4 LINE L1 -144 6011 5892 * 1903 226 0 0 chr6 74915077 74915498 -107499744 - L1 LINE L1 -837 5309 4889 6140 202 27 20 chr6 74915499 74916978 -107498264 - L1 LINE L1 -1474 4672 3184 22 56 0 0 chr6 74917131 74917167 -107498075 + AT_rich Low_complexity Low_complexity 1 36 0 260 297 18 36 chr6 74917513 74917624 -107497618 - MIR SINE MIR -67 195 87 1042 107 13 0 chr6 74917630 74917780 -107497462 - AluSg/x SINE Alu -8 304 153 1712 291 81 30 chr6 74918109 74918276 -107496966 + L1ME3A LINE L1 5316 5473 -697 270 0 0 0 chr6 74918276 74918306 -107496936 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1712 291 81 30 chr6 74918306 74918951 -107496291 + L1ME3A LINE L1 5473 6170 0 352 346 49 41 chr6 74920260 74920503 -107494739 + MIR SINE MIR 18 262 0 313 374 109 8 chr6 74920848 74921105 -107494137 - L2 LINE L2 -1893 1421 1139 2421 111 63 2 chr6 74922057 74922454 -107492788 + L1MA1 LINE L1 5882 6302 0 22 0 0 0 chr6 74922464 74922486 -107492756 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 74923390 74923422 -107491820 + AT_rich Low_complexity Low_complexity 1 32 0 315 298 24 0 chr6 74923657 74923741 -107491501 + L2 LINE L2 3227 3312 -1 * 569 339 153 36 chr6 74923738 74924210 -107491032 - L2 LINE L2 -337 2977 2451 1841 273 88 11 chr6 74924210 74924734 -107490508 - MLT1E LTR MaLR -22 571 8 308 312 94 29 chr6 74924738 74924908 -107490334 + MLT1L LTR MaLR 435 615 0 341 256 45 26 chr6 74927769 74927925 -107487317 + L1ME LINE L1 5578 5736 -385 6279 186 46 10 chr6 74928013 74930354 -107484888 - L1MA7 LINE L1 -6 6285 3859 242 232 58 0 chr6 74930356 74930425 -107484817 - L1MA7 LINE L1 -2228 3918 3846 6074 128 20 14 chr6 74930441 74931459 -107483783 - L1MA2 LINE L1 -7 6883 5860 533 66 26 0 chr6 74931461 74931537 -107483705 + Alu SINE Alu 221 298 -14 437 214 0 0 chr6 74931537 74931626 -107483616 - L1MA2 LINE L1 -854 5878 5790 * 929 140 0 0 chr6 74931625 74931775 -107483467 - L1MA2 LINE L1 -1147 5585 5436 5294 193 43 46 chr6 74931875 74934085 -107481157 - L1MA2 LINE L1 -3988 2744 669 237 35 0 0 chr6 74934094 74934123 -107481119 + MER11C LTR ERVK 1 29 -1042 4418 115 22 30 chr6 74934124 74935001 -107480241 + MER11A LTR ERVK 232 1266 0 2091 274 48 0 chr6 74935001 74935457 -107479785 - L1MA2 LINE L1 -6008 645 168 599 286 59 37 chr6 74935440 74935880 -107479362 - L1M3de LINE L1 -5581 1072 2 * 439 217 87 0 chr6 74935954 74936069 -107479173 - L1 LINE L1 -3798 3050 2926 307 217 60 30 chr6 74936073 74936208 -107479034 - L1 LINE L1 -3965 2883 2744 305 315 79 18 chr6 74936213 74936378 -107478864 - L2 LINE L2 -17 3296 3122 252 270 227 18 chr6 74936653 74936816 -107478426 - MIR SINE MIR -17 245 49 21 36 0 0 chr6 74936980 74937008 -107478234 + AT_rich Low_complexity Low_complexity 1 28 0 316 321 284 5 chr6 74937118 74937520 -107477722 - L2 LINE L2 -768 2546 2033 1642 175 0 32 chr6 74937760 74938075 -107477167 + AluJb SINE Alu 1 305 -7 187 159 0 32 chr6 74938656 74938719 -107476523 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 1219 218 31 81 chr6 74939289 74939670 -107475572 - MLT1A2 LTR MaLR -12 362 1 34 79 0 0 chr6 74940138 74940214 -107475028 + AT_rich Low_complexity Low_complexity 1 76 0 813 226 51 96 chr6 74942475 74942798 -107472444 - MLT1D LTR MaLR -167 338 31 192 97 0 0 chr6 74942798 74942829 -107472413 + (TTG)n Simple_repeat Simple_repeat 1 31 0 813 226 51 96 chr6 74942829 74942859 -107472383 - MLT1D LTR MaLR -474 31 1 24 67 0 0 chr6 74943223 74943268 -107471974 + AT_rich Low_complexity Low_complexity 1 45 0 32 0 0 0 chr6 74944052 74944084 -107471158 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 74945181 74945203 -107470039 + AT_rich Low_complexity Low_complexity 1 22 0 335 247 116 20 chr6 74946175 74946321 -107468921 + MER103 DNA DNA 1 160 -6 838 199 6 24 chr6 74946536 74946702 -107468540 - AluJb SINE Alu -10 302 140 6227 45 5 0 chr6 74946804 74947574 -107467668 + L1PA4 LINE L1 5374 6147 -8 38 22 0 0 chr6 74947590 74947635 -107467607 + AT_rich Low_complexity Low_complexity 1 45 0 738 294 57 12 chr6 74947645 74948077 -107467165 + L1ME LINE L1 1600 2154 -4424 1513 163 10 58 chr6 74948147 74948441 -107466801 + AluJo SINE Alu 9 288 -24 344 316 58 7 chr6 74948447 74948586 -107466656 + L1ME LINE L1 2147 2292 -4134 1330 261 112 23 chr6 74948625 74949954 -107465288 + L1ME LINE L1 2420 4057 -2369 3520 176 27 42 chr6 74950010 74950743 -107464499 - MER72 LTR ERV1 0 722 1 2158 123 10 0 chr6 74950964 74951273 -107463969 - AluSx SINE Alu 0 312 1 302 269 19 19 chr6 74951328 74951436 -107463806 - MLT1E3 LTR MaLR -452 172 65 297 286 48 16 chr6 74951336 74951462 -107463780 - MLT2C1 LTR ERVL -254 143 14 * 345 257 29 0 chr6 74951477 74951582 -107463660 + L1ME LINE L1 4061 4168 -2258 1256 237 62 4 chr6 74951616 74952005 -107463237 + L1ME LINE L1 5443 5879 -567 10654 122 55 44 chr6 74952471 74954681 -107460561 + L1P3 LINE L1 4 2286 -4175 326 306 31 47 chr6 74954788 74955174 -107460068 - L1ME LINE L1 -5113 957 578 771 307 27 0 chr6 74957024 74957249 -107457993 + MIR SINE MIR 2 232 -30 3898 169 31 11 chr6 74957303 74958045 -107457197 + Tigger2 DNA MER2_type 1 757 -1961 1231 149 60 36 chr6 74958102 74958351 -107456891 + Tigger2 DNA MER2_type 2464 2718 0 247 330 89 0 chr6 74958909 74959021 -107456221 + MIR SINE MIR 59 180 -82 531 287 66 24 chr6 74959181 74959348 -107455894 - MIR SINE MIR -45 217 44 242 368 23 0 chr6 74959351 74959438 -107455804 - MER91A DNA MER1_type -36 160 72 379 271 40 34 chr6 74959935 74960112 -107455130 + MER5B DNA MER1_type 1 178 0 186 321 0 0 chr6 74960379 74960432 -107454810 + MIR SINE MIR 210 262 0 1163 117 0 39 chr6 74961004 74961184 -107454058 - AluSq SINE Alu -15 298 126 1275 234 57 77 chr6 74961399 74961930 -107453312 - MLT2B1 LTR ERVL 0 520 1 387 340 19 19 chr6 74962503 74962659 -107452583 + MIR SINE MIR 90 245 -17 1491 198 38 26 chr6 74964033 74964119 -107451123 + MER2 DNA MER2_type 1 84 -260 2131 103 0 7 chr6 74964119 74964420 -107450822 + AluSc SINE Alu 1 299 -10 1491 198 38 26 chr6 74964420 74964672 -107450570 + MER2 DNA MER2_type 84 343 -1 501 328 43 17 chr6 74965071 74965306 -107449936 + L1M4 LINE L1 2 242 -6300 262 170 0 0 chr6 74965333 74965386 -107449856 + L1MB5 LINE L1 6116 6168 -6 189 107 0 0 chr6 74965389 74965417 -107449825 + (GAA)n Simple_repeat Simple_repeat 1 28 0 1256 235 151 11 chr6 74965454 74965910 -107449332 + L1MC4 LINE L1 7485 8004 -38 208 381 51 0 chr6 74965976 74966094 -107449148 + L2 LINE L2 2173 2296 -1018 252 377 40 40 chr6 74966283 74966604 -107448638 + L2 LINE L2 2418 2738 -576 629 324 60 25 chr6 74966691 74966975 -107448267 + L2 LINE L2 3020 3313 0 184 351 0 0 chr6 74967492 74967549 -107447693 + L2 LINE L2 3254 3310 -3 3098 22 0 8 chr6 74967634 74968003 -107447239 + L1PA2 LINE L1 5685 6050 -105 281 347 100 21 chr6 74968239 74968429 -107446813 - MIR SINE MIR -27 235 31 935 191 17 56 chr6 74968523 74968754 -107446488 + LTR51 LTR ERV1 1 222 -449 777 202 113 0 chr6 74968748 74968916 -107446326 + LTR51 LTR ERV1 371 557 -114 * 1275 110 0 20 chr6 74968920 74969120 -107446122 + AluY SINE Alu 108 303 -8 665 178 8 0 chr6 74969121 74969239 -107446003 + LTR51 LTR ERV1 553 671 0 380 300 123 53 chr6 74969268 74969301 -107445941 - MIR SINE MIR -71 191 162 1493 243 11 27 chr6 74969301 74969672 -107445570 + MLT1A1 LTR MaLR 1 365 0 380 300 123 53 chr6 74969672 74969808 -107445434 - MIR SINE MIR -100 162 10 6067 148 27 13 chr6 74969847 74970420 -107444822 + L1MA2 LINE L1 4957 5521 -783 2316 121 11 32 chr6 74970420 74970792 -107444450 - THE1B LTR MaLR 0 364 1 6067 148 27 13 chr6 74970792 74971550 -107443692 + L1MA2 LINE L1 5521 6304 0 414 0 0 0 chr6 74971616 74971662 -107443580 + (TA)n Simple_repeat Simple_repeat 2 47 0 221 368 23 23 chr6 74971804 74971937 -107443305 + MIR SINE MIR 72 204 -58 207 0 0 0 chr6 74972649 74972672 -107442570 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr6 74972863 74972895 -107442347 + AT_rich Low_complexity Low_complexity 1 32 0 348 195 12 0 chr6 74972981 74973063 -107442179 - L1MA1 LINE L1 0 6302 6220 24 53 0 0 chr6 74973106 74973144 -107442098 + AT_rich Low_complexity Low_complexity 1 38 0 203 190 0 52 chr6 74973483 74973541 -107441701 + T-rich Low_complexity Low_complexity 5 59 0 2123 117 16 3 chr6 74974650 74974958 -107440284 - AluSx SINE Alu 0 312 1 224 333 9 35 chr6 74975242 74975356 -107439886 - MIR SINE MIR -104 158 48 26 0 0 0 chr6 74975363 74975389 -107439853 + AT_rich Low_complexity Low_complexity 1 26 0 423 283 114 25 chr6 74975932 74976257 -107438985 - L1ME3A LINE L1 -230 5940 5587 326 351 80 27 chr6 74976258 74976520 -107438722 - L1ME3A LINE L1 -2215 5570 5295 232 234 16 0 chr6 74976536 74976600 -107438642 - L1 LINE L1 -867 5279 5215 1385 204 97 34 chr6 74976957 74977060 -107438182 - L1MA9 LINE L1 -32 6280 6185 194 0 39 0 chr6 74977060 74977086 -107438156 + (TG)n Simple_repeat Simple_repeat 1 27 0 1385 204 97 34 chr6 74977086 74977365 -107437877 - L1MA9 LINE L1 -127 6185 5874 425 105 0 96 chr6 74977367 74977459 -107437783 + L1MC/D LINE L1 5516 5599 -700 1457 215 65 0 chr6 74977798 74978123 -107437119 - MER7A DNA MER2_type 0 346 3 187 240 20 0 chr6 74978245 74978295 -107436947 + L2 LINE L2 3222 3272 0 21 36 0 0 chr6 74978724 74978752 -107436490 + AT_rich Low_complexity Low_complexity 1 28 0 2741 248 81 18 chr6 74979530 74980561 -107434681 - L1MC4 LINE L1 0 8042 6948 200 214 29 10 chr6 74980610 74980632 -107434610 + (TA)n Simple_repeat Simple_repeat 2 22 -84 1954 134 7 7 chr6 74980632 74980939 -107434303 - AluSg SINE Alu -3 307 1 200 214 29 10 chr6 74980939 74981019 -107434223 + (TA)n Simple_repeat Simple_repeat 22 106 0 462 233 0 19 chr6 74981090 74981193 -107434049 - L1MC4 LINE L1 -1176 6866 6766 425 50 17 0 chr6 74981216 74981276 -107433966 + (TG)n Simple_repeat Simple_repeat 2 62 0 2058 131 7 3 chr6 74981298 74981603 -107433639 - AluSg SINE Alu -4 306 1 309 212 129 0 chr6 74981603 74981688 -107433554 - L1MC4 LINE L1 -1381 6661 6566 352 182 0 13 chr6 74981728 74981805 -107433437 + L1MB2 LINE L1 6073 6148 -23 432 237 79 7 chr6 74981845 74981984 -107433258 - L1MC4a LINE L1 -1267 6541 6393 242 315 27 0 chr6 74982017 74982090 -107433152 + LTR16B LTR ERVL 67 141 -323 334 341 45 0 chr6 74982128 74982260 -107432982 + LTR16B LTR ERVL 141 278 -186 820 287 66 35 chr6 74982323 74982901 -107432341 + L1MEc LINE L1 1160 1755 -4641 23 0 0 0 chr6 74983163 74983186 -107432056 + AT_rich Low_complexity Low_complexity 1 23 0 2379 78 0 3 chr6 74983230 74983538 -107431704 - AluY SINE Alu -4 307 1 2258 61 7 3 chr6 74984096 74984393 -107430849 + L1PA8A LINE L1 5806 6103 -28 23 0 0 0 chr6 74984590 74984613 -107430629 + AT_rich Low_complexity Low_complexity 1 23 0 1991 134 37 35 chr6 74985132 74985506 -107429736 - THE1C LTR MaLR 0 375 1 880 206 16 16 chr6 74985540 74985729 -107429513 - MER5A DNA MER1_type 0 189 1 3130 185 45 92 chr6 74986028 74986589 -107428653 + L1MCa LINE L1 20 531 -5895 2391 74 0 19 chr6 74986589 74986901 -107428341 + AluY SINE Alu 1 306 -5 3130 185 45 92 chr6 74986901 74987176 -107428066 + L1MCa LINE L1 531 817 -5609 15271 184 53 33 chr6 74987177 74989364 -107425878 + L1PA15-16 LINE L1 1 2340 -4509 2347 88 0 0 chr6 74989364 74989658 -107425584 + AluY SINE Alu 1 294 -17 15271 184 53 33 chr6 74989658 74991154 -107424088 + L1PA15-16 LINE L1 2340 3804 -3045 3084 128 11 2 chr6 74991169 74991646 -107423596 + HERVL LTR ERVL 1140 1620 -4034 612 168 10 0 chr6 74991749 74991850 -107423392 - AluJ/FLAM SINE Alu -210 102 1 1134 298 117 6 chr6 74994462 74994973 -107420269 + L2 LINE L2 1649 2216 -1098 23 33 0 0 chr6 74995148 74995178 -107420064 + AT_rich Low_complexity Low_complexity 1 30 0 291 344 21 0 chr6 74995324 74995417 -107419825 + MIR3 SINE MIR 82 176 -32 365 313 60 18 chr6 74996064 74996230 -107419012 - MIR SINE MIR -71 191 19 896 254 18 18 chr6 74996673 74996897 -107418345 + MIR SINE MIR 5 228 -34 21 36 0 0 chr6 74997241 74997269 -107417973 + AT_rich Low_complexity Low_complexity 1 28 0 193 310 46 11 chr6 74998430 74998517 -107416725 - L2 LINE L2 -1 3312 3223 230 278 124 10 chr6 74998841 74998938 -107416304 + L2 LINE L2 2934 3041 -231 257 241 60 24 chr6 74999007 74999090 -107416152 - L2 LINE L2 -1 3312 3227 202 371 0 0 chr6 74999306 74999376 -107415866 + L2 LINE L2 2709 2778 -536 2500 237 138 43 chr6 75000270 75000426 -107414816 - L1MC4 LINE L1 -95 7713 7573 1505 199 45 65 chr6 75000426 75000824 -107414418 + MLT1B LTR MaLR 1 390 0 2500 237 138 43 chr6 75000824 75001268 -107413974 - L1MC4 LINE L1 -235 7573 7172 1809 187 80 34 chr6 75001268 75001680 -107413562 + MSTB1 LTR MaLR 1 431 -1 2500 237 138 43 chr6 75001680 75002321 -107412921 - L1MC4 LINE L1 -636 7172 6472 286 318 12 0 chr6 75002885 75002970 -107412272 + MER5B DNA MER1_type 50 135 -43 426 137 0 0 chr6 75002981 75003054 -107412188 - Alu SINE Alu -6 306 234 438 281 39 1 chr6 75003150 75003355 -107411887 + MLT1E LTR MaLR 1 232 -422 1306 229 64 18 chr6 75003355 75003683 -107411559 - MSTD LTR MaLR 0 396 54 1382 252 18 64 chr6 75003787 75004176 -107411066 + MLT1E LTR MaLR 223 593 0 997 220 10 152 chr6 75004481 75004650 -107410592 + MLT1A1 LTR MaLR 11 88 -277 258 116 0 0 chr6 75004650 75004693 -107410549 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 997 220 10 152 chr6 75004693 75004937 -107410305 + MLT1A1 LTR MaLR 88 365 0 381 138 0 0 chr6 75005737 75005802 -107409440 - L1PA16 LINE L1 -9 6157 6093 1889 178 23 3 chr6 75005856 75006210 -107409032 - L1MC1 LINE L1 -11 6322 5962 3133 193 39 0 chr6 75006210 75006775 -107408467 + LTR69 LTR ERVL 2 588 0 2303 213 66 2 chr6 75006775 75007305 -107407937 - L1MC1 LINE L1 -2028 5967 5404 3381 67 23 5 chr6 75007305 75007741 -107407501 - MLT2A1 LTR ERVL 0 444 1 6614 76 18 0 chr6 75007741 75008600 -107406642 - HERVL-A1 LTR ERVL 0 5654 4781 5736 105 25 1 chr6 75008592 75009402 -107405840 - HERVL LTR ERVL -3338 2316 1488 * 30 27 0 0 chr6 75009536 75009573 -107405669 + AT_rich Low_complexity Low_complexity 1 37 0 258 308 120 39 chr6 75010184 75010392 -107404850 + MIR SINE MIR 1 225 -37 227 244 37 126 chr6 75010509 75010644 -107404598 + MIR SINE MIR 21 143 -65 267 31 0 0 chr6 75010704 75010736 -107404506 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 290 26 26 0 chr6 75010735 75010774 -107404468 + (CA)n Simple_repeat Simple_repeat 1 40 0 643 266 120 13 chr6 75010999 75011381 -107403861 + L1MC4a LINE L1 5472 5653 -468 26 88 0 0 chr6 75011880 75011948 -107403294 + AT_rich Low_complexity Low_complexity 1 68 0 1788 138 12 0 chr6 75012586 75012765 -107402477 - AluSx SINE Alu 0 312 127 2125 117 14 0 chr6 75012765 75013055 -107402187 - AluSq SINE Alu -19 294 1 1788 138 12 0 chr6 75013055 75013156 -107402086 - AluSx SINE Alu -185 127 29 345 268 93 93 chr6 75013173 75013483 -107401759 + MLT1J LTR MaLR 195 504 -7 1592 196 0 10 chr6 75014110 75014401 -107400841 + AluJb SINE Alu 1 288 -24 2072 155 46 0 chr6 75015891 75016240 -107399002 - MLT1A1 LTR MaLR 0 365 1 339 229 267 15 chr6 75016442 75016573 -107398669 - MER5A DNA MER1_type 0 189 26 358 211 156 0 chr6 75016580 75016670 -107398572 - ORSL DNA AcHobo -170 105 2 274 297 138 21 chr6 75017104 75017249 -107397993 + L2 LINE L2 3144 3305 -8 366 226 36 0 chr6 75017916 75018000 -107397242 - L2 LINE L2 0 3313 3227 1145 249 33 25 chr6 75018044 75018416 -107396826 + MLT1A2 LTR MaLR 1 467 0 3482 216 27 41 chr6 75018454 75019773 -107395469 + L1MB7 LINE L1 4855 6154 -30 182 293 180 27 chr6 75019905 75020055 -107395187 - L2 LINE L2 -454 2860 2688 447 35 0 0 chr6 75020415 75020473 -107394769 - L1PA4 LINE L1 -2 6153 6096 34 24 0 0 chr6 75020554 75020595 -107394647 + AT_rich Low_complexity Low_complexity 1 41 0 610 282 83 83 chr6 75020658 75021151 -107394091 + L1M2 LINE L1 18 510 -6339 244 341 83 52 chr6 75021951 75022180 -107393062 + L1M2 LINE L1 892 1127 -5722 4527 218 83 22 chr6 75022180 75022741 -107392501 + L1PA15-16 LINE L1 690 1215 -4988 222 37 0 0 chr6 75022741 75022768 -107392474 + (CA)n Simple_repeat Simple_repeat 2 28 0 180 77 0 0 chr6 75022770 75022796 -107392446 + (TA)n Simple_repeat Simple_repeat 2 27 0 4527 218 83 22 chr6 75022796 75023940 -107391302 + L1PA15-16 LINE L1 1215 2512 -3691 30 27 0 0 chr6 75023940 75023977 -107391265 + AT_rich Low_complexity Low_complexity 1 37 0 1026 202 0 0 chr6 75023984 75024177 -107391065 - MST-int LTR MaLR -1090 561 369 251 200 53 63 chr6 75024205 75024300 -107390942 + L1MC4 LINE L1 6610 6703 -1339 198 0 0 0 chr6 75024300 75024322 -107390920 + (TA)n Simple_repeat Simple_repeat 2 23 0 315 0 0 0 chr6 75024322 75024357 -107390885 + (GA)n Simple_repeat Simple_repeat 2 36 0 787 259 10 0 chr6 75024357 75024554 -107390688 - L1 LINE L1 -3499 2647 2449 8812 157 19 37 chr6 75024556 75026132 -107389110 - MSTA-int LTR MaLR -30 1550 3 1421 192 176 16 chr6 75026134 75026503 -107388739 - MSTA LTR MaLR 0 428 1 735 227 28 28 chr6 75026526 75026777 -107388465 + L1 LINE L1 3239 3489 -2657 * 893 239 9 0 chr6 75026773 75026999 -107388243 + L1 LINE L1 3772 3999 -2147 * 1243 159 53 12 chr6 75026995 75027240 -107388002 + L1PA16 LINE L1 5891 6145 -21 1821 204 24 3 chr6 75027307 75027689 -107387553 + MLT1B LTR MaLR 1 390 0 533 218 75 54 chr6 75027708 75027947 -107387295 - L1MC4 LINE L1 -1 8041 7798 208 188 21 0 chr6 75028041 75028089 -107387153 + (TA)n Simple_repeat Simple_repeat 2 50 0 695 234 72 0 chr6 75028098 75028307 -107386935 - L1MC4 LINE L1 -657 7385 7162 288 331 159 28 chr6 75029615 75029941 -107385301 - LTR33 LTR ERVL 0 521 153 30 0 0 0 chr6 75030485 75030515 -107384727 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr6 75030987 75031008 -107384234 + (CA)n Simple_repeat Simple_repeat 1 21 0 192 294 47 24 chr6 75031189 75031274 -107383968 + MIR SINE MIR 165 251 -11 552 306 92 38 chr6 75031925 75032186 -107383056 + LTR33 LTR ERVL 9 283 -238 25 0 0 0 chr6 75032749 75032774 -107382468 + AT_rich Low_complexity Low_complexity 1 25 0 1706 107 57 60 chr6 75033322 75033620 -107381622 + AluSx SINE Alu 5 301 -11 414 314 117 23 chr6 75034434 75035172 -107380070 - L1MEd LINE L1 -2267 3862 3060 236 143 14 57 chr6 75035341 75035411 -107379831 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 591 323 90 28 chr6 75036455 75037039 -107378203 - L1MEd LINE L1 -4613 1697 1034 1284 313 122 37 chr6 75037040 75037956 -107377286 - L1MEd LINE L1 -5123 996 3 1162 136 21 0 chr6 75038617 75038808 -107376434 - L1PA16 LINE L1 -9 6157 5963 22 0 0 0 chr6 75039448 75039470 -107375772 + AT_rich Low_complexity Low_complexity 1 22 0 1908 149 149 8 chr6 75040218 75040593 -107374649 + MSTA LTR MaLR 1 428 0 8620 142 28 35 chr6 75040595 75042184 -107373058 + MSTA-int LTR MaLR 3 1580 0 1618 187 171 3 chr6 75042188 75042551 -107372691 + MSTA LTR MaLR 5 428 0 849 232 53 47 chr6 75043075 75043365 -107371877 - L1ME3A LINE L1 -1 6161 5878 2251 76 3 0 chr6 75043365 75043654 -107371588 - AluY SINE Alu -21 290 1 849 232 53 47 chr6 75043654 75043686 -107371556 - L1ME3A LINE L1 -284 5878 5848 1620 239 92 26 chr6 75046975 75047618 -107367624 + L1M4 LINE L1 4616 5300 -846 510 316 136 7 chr6 75047634 75047935 -107367307 - L2 LINE L2 -2401 913 574 496 274 68 82 chr6 75048006 75048225 -107367017 + MIR SINE MIR 47 262 0 2350 224 54 16 chr6 75050085 75050697 -107364545 + L1MD3 LINE L1 7361 7995 0 31 0 0 0 chr6 75050697 75050728 -107364514 + AT_rich Low_complexity Low_complexity 1 31 0 219 279 128 12 chr6 75050900 75050986 -107364256 - MIR SINE MIR -69 139 44 23 0 0 0 chr6 75051450 75051473 -107363769 + AT_rich Low_complexity Low_complexity 1 23 0 5176 12 0 0 chr6 75052036 75052624 -107362618 + L1HS LINE L1 5568 6155 0 1969 117 63 23 chr6 75053011 75053361 -107361881 - THE1B LTR MaLR 0 364 1 237 323 48 0 chr6 75054419 75054481 -107360761 - L2 LINE L2 -86 3186 3122 32 0 0 0 chr6 75055988 75056020 -107359222 + AT_rich Low_complexity Low_complexity 1 32 0 1668 138 33 22 chr6 75056034 75056309 -107358933 - AluSg SINE Alu -30 280 3 2093 178 32 24 chr6 75056513 75057028 -107358214 + MLT2A2 LTR ERVL 1 480 -40 240 238 0 48 chr6 75057032 75057116 -107358126 + L1MC4 LINE L1 6624 6703 -1339 296 154 39 0 chr6 75057146 75057198 -107358044 + MLT2A2 LTR ERVL 400 453 0 31 99 0 0 chr6 75058041 75058142 -107357100 + AT_rich Low_complexity Low_complexity 1 101 0 314 301 32 11 chr6 75059119 75059212 -107356030 + LTR16A1 LTR ERVL 6 100 -357 * 356 274 60 8 chr6 75059211 75059328 -107355914 + LTR16A1 LTR ERVL 331 453 -4 21 0 0 0 chr6 75059662 75059683 -107355559 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 75059798 75059821 -107355421 + AT_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr6 75060684 75060743 -107354499 + AT_rich Low_complexity Low_complexity 1 59 0 1286 217 158 22 chr6 75063309 75063770 -107351472 + LTR45 LTR ERV1 2 525 0 978 222 30 21 chr6 75064205 75064439 -107350803 - MLT1A1 LTR MaLR -129 236 1 26 30 0 0 chr6 75065419 75065452 -107349790 + AT_rich Low_complexity Low_complexity 1 33 0 1943 155 15 9 chr6 75066286 75066628 -107348614 + MER50 LTR ERV1 1 344 -390 23 0 0 0 chr6 75067640 75067663 -107347579 + AT_rich Low_complexity Low_complexity 1 23 0 1856 137 3 0 chr6 75068663 75068947 -107346295 + AluSx SINE Alu 17 301 -11 22628 91 12 10 chr6 75069031 75069359 -107345883 - L1PA7 LINE L1 -4 6150 5824 234 0 0 0 chr6 75069359 75069385 -107345857 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 22628 91 12 10 chr6 75069385 75069399 -107345843 - L1PA7 LINE L1 -330 5824 5812 1930 98 12 0 chr6 75069399 75069654 -107345588 - AluY SINE Alu -28 283 26 22628 91 12 10 chr6 75069654 75073396 -107341846 - L1PA7 LINE L1 -342 5812 2071 1095 93 0 0 chr6 75123396 75123535 -107291707 - AluSq/x SINE Alu -174 139 1 1811 211 74 31 chr6 75123608 75124095 -107291147 + MLT2F LTR ERVL 156 663 0 225 309 88 59 chr6 75124223 75124359 -107290883 - L2 LINE L2 -8 3264 3125 254 361 89 30 chr6 75125836 75126038 -107289204 - MIR SINE MIR -41 221 8 25 0 0 0 chr6 75126198 75126223 -107289019 + AT_rich Low_complexity Low_complexity 1 25 0 314 350 0 10 chr6 75126581 75126684 -107288558 + MIR SINE MIR 45 146 -62 1729 168 13 3 chr6 75127835 75128145 -107287097 + AluSq SINE Alu 1 313 0 22 99 0 0 chr6 75128152 75128223 -107287019 + AT_rich Low_complexity Low_complexity 1 71 0 375 369 60 62 chr6 75128572 75129041 -107286201 + L3 LINE CR1 36 503 -1074 206 273 0 0 chr6 75129142 75129186 -107286056 - L2 LINE L2 -86 3227 3184 188 324 42 0 chr6 75129249 75129320 -107285922 + L3 LINE CR1 688 761 -816 535 305 32 54 chr6 75129435 75129750 -107285492 + MLT1G1 LTR MaLR 110 417 -178 205 200 18 0 chr6 75129875 75129930 -107285312 + CT-rich Low_complexity Low_complexity 1 56 0 198 0 0 0 chr6 75129933 75129955 -107285287 + (CA)n Simple_repeat Simple_repeat 1 22 0 200 374 167 9 chr6 75130117 75130339 -107284903 + L2 LINE L2 2487 2743 -571 2214 107 0 3 chr6 75130375 75130675 -107284567 - AluSq SINE Alu -14 299 1 244 353 97 53 chr6 75130726 75131182 -107284060 + L2 LINE L2 2838 3313 0 355 343 99 6 chr6 75131317 75131489 -107283753 + L3 LINE CR1 1049 1236 -341 191 351 0 0 chr6 75131582 75131639 -107283603 - L2 LINE L2 -3 3310 3254 652 61 0 0 chr6 75131727 75131809 -107283433 - L1PA8 LINE L1 -182 5990 5909 501 44 15 15 chr6 75131809 75131872 -107283370 + L1PA7 LINE L1 6072 6139 -15 343 346 47 47 chr6 75132058 75132292 -107282950 - L2 LINE L2 -338 2976 2743 180 0 0 0 chr6 75132413 75132433 -107282809 + (CA)n Simple_repeat Simple_repeat 1 20 0 874 211 16 11 chr6 75132533 75132718 -107282524 + MLT1B LTR MaLR 205 390 0 1219 321 119 64 chr6 75132718 75134143 -107281099 - L2 LINE L2 -787 2527 1024 1334 247 140 30 chr6 75134156 75134669 -107280573 - MLT1F1 LTR MaLR -3 564 1 4765 25 4 0 chr6 75134885 75135445 -107279797 + L1PA3 LINE L1 5594 6155 0 2638 0 0 0 chr6 75135453 75135797 -107279445 + AluYa5 SINE Alu 1 344 0 256 333 85 20 chr6 75136768 75136921 -107278321 - MIR3 SINE MIR -14 194 32 25 31 0 0 chr6 75137462 75137494 -107277748 + AT_rich Low_complexity Low_complexity 1 32 0 387 212 0 0 chr6 75137618 75137703 -107277539 + (TA)n Simple_repeat Simple_repeat 1 85 0 200 111 28 0 chr6 75138366 75138402 -107276840 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 263 294 22 0 chr6 75138406 75138498 -107276744 + (TA)n Simple_repeat Simple_repeat 1 94 0 203 350 0 0 chr6 75140842 75140945 -107274297 + C-rich Low_complexity Low_complexity 1 103 0 256 248 23 23 chr6 75141038 75141171 -107274071 + (CG)n Simple_repeat Simple_repeat 1 133 0 369 0 0 0 chr6 75142309 75142350 -107272892 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 189 0 0 0 chr6 75143483 75143504 -107271738 + (GAAAA)n Simple_repeat Simple_repeat 2 22 0 28 61 0 0 chr6 75147712 75147761 -107267481 + AT_rich Low_complexity Low_complexity 1 49 0 198 0 0 0 chr6 75149307 75149329 -107265913 + (T)n Simple_repeat Simple_repeat 1 22 0 2111 115 0 3 chr6 75149520 75149815 -107265427 + AluSg1 SINE Alu 1 294 -15 203 61 30 0 chr6 75149861 75149894 -107265348 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 22 56 0 0 chr6 75150198 75150234 -107265008 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 75151214 75151235 -107264007 + AT_rich Low_complexity Low_complexity 1 21 0 196 262 331 0 chr6 75151391 75151536 -107263706 + MIR SINE MIR 63 255 -7 2149 113 3 3 chr6 75151540 75151841 -107263401 - AluSq SINE Alu -12 301 1 23 68 0 0 chr6 75151958 75152002 -107263240 + AT_rich Low_complexity Low_complexity 1 44 0 2210 112 0 0 chr6 75152063 75152376 -107262866 + AluSq SINE Alu 1 313 0 30 45 0 0 chr6 75154641 75154685 -107260557 + AT_rich Low_complexity Low_complexity 1 44 0 181 345 12 24 chr6 75155062 75155146 -107260096 - L3 LINE CR1 -4 1573 1491 327 268 120 35 chr6 75155701 75155935 -107259307 + LTR33 LTR ERVL 257 520 -1 710 281 35 59 chr6 75158796 75159201 -107256041 + MLT1I LTR MaLR 8 402 -7 272 340 0 0 chr6 75159665 75159759 -107255483 + T-rich Low_complexity Low_complexity 5 98 0 207 100 0 0 chr6 75159765 75159795 -107255447 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 347 239 146 126 chr6 75161056 75161303 -107253939 + MIR SINE MIR 1 252 -10 234 269 103 63 chr6 75162210 75162385 -107252857 + MIR SINE MIR 81 262 0 198 272 26 132 chr6 75162635 75162749 -107252493 + MIR SINE MIR 50 151 -111 584 314 92 0 chr6 75163915 75164144 -107251098 - MIR SINE MIR -1 261 5 22 56 0 0 chr6 75164886 75164922 -107250320 + AT_rich Low_complexity Low_complexity 1 36 0 41 66 0 0 chr6 75166079 75166155 -107249087 + AT_rich Low_complexity Low_complexity 1 76 0 24 0 0 0 chr6 75166853 75166877 -107248365 + AT_rich Low_complexity Low_complexity 1 24 0 238 179 0 0 chr6 75167193 75167249 -107247993 + L1MC4 LINE L1 6648 6703 -1339 372 189 0 0 chr6 75167249 75167323 -107247919 + (TA)n Simple_repeat Simple_repeat 2 75 0 226 119 0 0 chr6 75167323 75167365 -107247877 + LTR66 LTR ERVL 398 439 -171 23 0 0 0 chr6 75168332 75168355 -107246887 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr6 75168718 75168770 -107246472 + AT_rich Low_complexity Low_complexity 1 52 0 30 0 0 0 chr6 75169202 75169232 -107246010 + AT_rich Low_complexity Low_complexity 1 30 0 1401 237 22 16 chr6 75170094 75170457 -107244785 + MLT1A1 LTR MaLR 1 365 0 323 235 197 15 chr6 75170472 75170604 -107244638 - MIR SINE MIR -105 157 2 664 26 0 0 chr6 75170971 75171048 -107244194 - U3 snRNA snRNA -140 77 1 226 333 9 45 chr6 75171319 75171430 -107243812 + MIR SINE MIR 146 252 -10 218 296 0 0 chr6 75171858 75171912 -107243330 + MIR SINE MIR 87 140 -68 428 276 0 43 chr6 75173440 75173556 -107241686 - MLT1H LTR MaLR -337 212 102 277 198 157 58 chr6 75173731 75173852 -107241390 + MLT1F LTR MaLR 370 502 -40 223 371 6 63 chr6 75174527 75174702 -107240540 + L2 LINE L2 2914 3078 -194 28 0 0 0 chr6 75174857 75174885 -107240357 + AT_rich Low_complexity Low_complexity 1 28 0 3192 107 22 47 chr6 75174886 75175407 -107239835 - L1MA1 LINE L1 -10 6292 5784 351 0 0 0 chr6 75175407 75175446 -107239796 + (TG)n Simple_repeat Simple_repeat 2 40 0 3192 107 22 47 chr6 75175446 75175477 -107239765 - L1MA1 LINE L1 -518 5784 5754 180 0 0 0 chr6 75176701 75176721 -107238521 + (TAGA)n Simple_repeat Simple_repeat 3 22 0 294 331 101 30 chr6 75177137 75177306 -107237936 + MIR SINE MIR 7 187 -75 331 273 8 33 chr6 75177350 75177471 -107237771 + MIR SINE MIR 120 237 -25 38 22 0 0 chr6 75177569 75177614 -107237628 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr6 75177693 75177721 -107237521 + AT_rich Low_complexity Low_complexity 1 28 0 744 203 16 22 chr6 75177896 75178078 -107237164 - Tigger2 DNA MER2_type -10 2708 2528 * 1185 137 29 10 chr6 75178049 75178253 -107236989 - Tigger2 DNA MER2_type -2510 208 1 198 288 110 27 chr6 75179408 75179450 -107235792 - MIR SINE MIR -53 209 172 180 0 0 0 chr6 75179450 75179470 -107235772 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 198 288 110 27 chr6 75179470 75179500 -107235742 - MIR SINE MIR -90 172 131 679 256 67 0 chr6 75179501 75179665 -107235577 + MER58A DNA MER1_type 2 176 -48 21 82 0 0 chr6 75180263 75180312 -107234930 + AT_rich Low_complexity Low_complexity 1 49 0 446 286 246 8 chr6 75180452 75180704 -107234538 - L2 LINE L2 -3 3310 2999 1649 217 101 25 chr6 75180704 75181179 -107234063 + MER70B LTR ERVL 1 511 -67 443 263 116 46 chr6 75182677 75182936 -107232306 - L1ME LINE L1 -303 5818 5542 333 357 8 16 chr6 75183103 75183232 -107232010 + MIR SINE MIR 2 129 -133 824 163 39 8 chr6 75183253 75183427 -107231815 - MLT1C LTR MaLR -2 465 305 203 217 43 0 chr6 75184563 75184609 -107230633 + MER5A DNA MER1_type 65 112 -77 369 0 0 0 chr6 75184635 75184676 -107230566 + (CA)n Simple_repeat Simple_repeat 2 42 0 253 228 186 61 chr6 75184911 75185174 -107230068 - L1MC4 LINE L1 -241 7801 7506 2795 109 48 23 chr6 75185182 75185624 -107229618 - MLT2A2 LTR ERVL 0 453 1 24810 90 11 8 chr6 75185624 75189804 -107225438 - HERVL-A2 LTR ERVL 0 5654 1457 1854 156 3 17 chr6 75189804 75190128 -107225114 - AluSx SINE Alu 0 320 1 24810 90 11 8 chr6 75190128 75190494 -107224748 - HERVL-A2 LTR ERVL -4197 1457 1094 6855 72 0 9 chr6 75190497 75191386 -107223856 - HERVL-A2 LTR ERVL -4773 881 1 357 73 0 18 chr6 75191386 75191441 -107223801 - MLT2A2 LTR ERVL 0 453 400 232 192 0 51 chr6 75191449 75191527 -107223715 + (TA)n Simple_repeat Simple_repeat 1 74 0 2082 118 18 50 chr6 75191532 75191872 -107223370 - MLT2A2 LTR ERVL -55 398 70 5043 30 18 0 chr6 75191872 75192481 -107222761 - L1PA4 LINE L1 -2026 4120 3501 10383 25 3 1 chr6 75192481 75194567 -107220675 + L1PA4 LINE L1 4108 6155 0 457 93 80 0 chr6 75194586 75194661 -107220581 - MLT2A2 LTR ERVL -372 81 1 1135 272 99 44 chr6 75194690 75195574 -107219668 - L1MC4 LINE L1 -402 7486 6447 1130 168 14 0 chr6 75195601 75195821 -107219421 - L1MA7 LINE L1 -6 6285 6063 989 196 9 23 chr6 75195921 75196140 -107219102 - L1MA7 LINE L1 -419 5872 5657 262 281 0 0 chr6 75196146 75196203 -107219039 - MER2 DNA MER2_type -1 344 288 * 323 180 0 0 chr6 75196202 75196252 -107218990 - MER2 DNA MER2_type -19 326 277 6204 243 21 31 chr6 75196637 75198401 -107216841 + L1PA13 LINE L1 1358 3057 -3740 6863 64 2 12 chr6 75198401 75199227 -107216015 + L1PA7 LINE L1 4665 5477 -677 2246 88 41 3 chr6 75199227 75199521 -107215721 + AluY SINE Alu 1 305 -6 6863 64 2 12 chr6 75199521 75200193 -107215049 + L1PA7 LINE L1 5477 6154 0 6204 243 21 31 chr6 75200193 75201218 -107214024 + L1PA13 LINE L1 3057 4091 -2706 551 219 7 7 chr6 75201249 75201386 -107213856 + L1PA13 LINE L1 4836 4972 -1825 5568 215 24 42 chr6 75201387 75202871 -107212371 + L1PA15 LINE L1 3441 4898 -1248 2404 151 11 3 chr6 75202871 75203242 -107212000 + THE1C LTR MaLR 1 374 -1 9443 123 42 40 chr6 75203244 75204820 -107210422 + THE1C-int LTR MaLR 2 1580 0 2168 136 54 3 chr6 75204825 75205177 -107210065 + THE1C LTR MaLR 6 375 0 5331 155 2 6 chr6 75205177 75206446 -107208796 + L1PA15 LINE L1 4894 6165 0 1475 187 25 4 chr6 75206446 75206724 -107208518 - MER2 DNA MER2_type -61 284 1 1778 172 31 29 chr6 75206724 75207220 -107208022 - L1M2 LINE L1 -645 5646 5151 4368 193 93 14 chr6 75207221 75208349 -107206893 - L1M2 LINE L1 -1720 4426 3210 318 110 0 41 chr6 75208410 75208483 -107206759 + (TA)n Simple_repeat Simple_repeat 1 70 0 253 133 0 0 chr6 75208485 75208530 -107206712 + LTR66 LTR ERVL 394 438 -172 193 130 0 74 chr6 75208531 75208544 -107206698 + (TA)n Simple_repeat Simple_repeat 2 14 -37 2207 119 0 0 chr6 75208544 75208847 -107206395 - AluSg SINE Alu -7 303 1 193 130 0 74 chr6 75208847 75208887 -107206355 + (TA)n Simple_repeat Simple_repeat 14 51 0 2590 148 14 7 chr6 75208904 75209329 -107205913 - MSTA LTR MaLR 0 428 1 1362 196 34 10 chr6 75209329 75209348 -107205894 - L1MA3 LINE L1 -11 6294 6277 219 69 0 0 chr6 75209348 75209377 -107205865 + (TA)n Simple_repeat Simple_repeat 2 30 0 1362 196 34 10 chr6 75209377 75209648 -107205594 - L1MA3 LINE L1 -28 6277 5997 379 315 158 0 chr6 75209686 75209832 -107205410 - MIR SINE MIR -89 173 5 190 347 82 68 chr6 75209814 75209961 -107205281 - L2 LINE L2 -24 3248 3100 * 1375 205 22 130 chr6 75210670 75211222 -107204020 + MLT1D LTR MaLR 7 498 -7 49 0 0 0 chr6 75212257 75212306 -107202936 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr6 75212335 75212356 -107202886 + AT_rich Low_complexity Low_complexity 1 21 0 391 339 182 23 chr6 75213252 75213692 -107201550 + L1MD1 LINE L1 5380 5889 -353 21 0 0 0 chr6 75214134 75214155 -107201087 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr6 75214642 75214674 -107200568 + AT_rich Low_complexity Low_complexity 1 32 0 1907 130 56 0 chr6 75215332 75215617 -107199625 - AluSx SINE Alu -11 301 1 541 225 23 6 chr6 75215963 75216136 -107199106 + CT-rich Low_complexity Low_complexity 3 178 0 308 77 19 39 chr6 75216136 75216188 -107199054 + (TTTC)n Simple_repeat Simple_repeat 4 54 0 24 53 0 0 chr6 75217004 75217042 -107198200 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr6 75217488 75217511 -107197731 + (CTG)n Simple_repeat Simple_repeat 1 23 0 * 201 147 0 0 chr6 75217509 75217543 -107197699 + (ATG)n Simple_repeat Simple_repeat 2 35 0 289 121 0 91 chr6 75218512 75218578 -107196664 - MER1B DNA MER1_type -17 322 263 872 143 77 0 chr6 75218610 75218778 -107196464 - MER1B DNA MER1_type -116 181 1 782 246 31 11 chr6 75218778 75218967 -107196275 + LTR16A1 LTR ERVL 265 457 0 5083 170 36 12 chr6 75219646 75221033 -107194209 - L1MA4 LINE L1 -6 6294 4882 11370 243 31 33 chr6 75222160 75225567 -107189675 + L1PA16 LINE L1 777 4188 -2015 1944 115 39 4 chr6 75225567 75225846 -107189396 - AluSc SINE Alu -20 289 1 11370 243 31 33 chr6 75225846 75226020 -107189222 + L1PA16 LINE L1 4188 4361 -1842 360 0 0 0 chr6 75226020 75226060 -107189182 + (CA)n Simple_repeat Simple_repeat 2 41 0 11370 243 31 33 chr6 75226060 75226931 -107188311 + L1PA16 LINE L1 4361 5340 -863 3827 175 17 13 chr6 75226940 75227627 -107187615 + L1PA16 LINE L1 5504 6187 -36 207 0 0 0 chr6 75227627 75227650 -107187592 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 1645 194 46 0 chr6 75227650 75228001 -107187241 + L1MC1 LINE L1 5966 6332 -1 3827 175 17 13 chr6 75228001 75228021 -107187221 + L1PA16 LINE L1 6186 6215 -8 1715 164 19 54 chr6 75228229 75228600 -107186642 - MER46B DNA MER2_type -3 233 1 187 204 231 0 chr6 75228866 75228974 -107186268 - MIR SINE MIR -26 236 104 604 211 18 0 chr6 75229417 75229531 -107185711 - FLAM_A SINE Alu -17 125 10 211 231 0 19 chr6 75231465 75231517 -107183725 + T-rich Low_complexity Low_complexity 2 52 0 26 30 0 0 chr6 75232096 75232129 -107183113 + AT_rich Low_complexity Low_complexity 1 33 0 322 348 43 7 chr6 75232377 75232515 -107182727 - MER91A DNA MER1_type -43 153 11 211 298 75 53 chr6 75233484 75233578 -107181664 + L2 LINE L2 3169 3264 -8 368 53 13 40 chr6 75233819 75233894 -107181348 + (TA)n Simple_repeat Simple_repeat 2 74 0 581 104 74 6 chr6 75233929 75234092 -107181150 + (TA)n Simple_repeat Simple_repeat 2 175 0 22 35 0 0 chr6 75236267 75236296 -107178946 + AT_rich Low_complexity Low_complexity 1 29 0 234 329 0 0 chr6 75236955 75237025 -107178217 + MLT1K LTR MaLR 180 249 -339 1401 216 17 3 chr6 75237025 75237316 -107177926 - AluJo SINE Alu -17 295 1 351 317 81 27 chr6 75237385 75237606 -107177636 + MLT1K LTR MaLR 348 580 -8 30 0 0 0 chr6 75237620 75237650 -107177592 + AT_rich Low_complexity Low_complexity 1 30 0 282 356 9 17 chr6 75237800 75237915 -107177327 + MIR SINE MIR 5 118 -144 208 143 0 0 chr6 75238232 75238267 -107176975 + (TTA)n Simple_repeat Simple_repeat 2 36 0 12594 179 25 13 chr6 75239351 75241700 -107173542 - L1 LINE L1 -909 6656 4236 6660 76 9 0 chr6 75241700 75243091 -107172151 - L1PA7 LINE L1 -3 6151 4757 12594 179 25 13 chr6 75243091 75244714 -107170528 - L1 LINE L1 -3329 4236 2634 366 380 82 34 chr6 75245130 75245754 -107169488 - L2 LINE L2 -480 2834 2181 2319 108 0 0 chr6 75246357 75246653 -107168589 - AluSg SINE Alu -14 296 1 2006 141 45 33 chr6 75246900 75247319 -107167923 - L1MA7 LINE L1 0 6291 5868 369 279 45 146 chr6 75247322 75247720 -107167522 - L1ME4a LINE L1 -240 5881 5524 228 312 40 32 chr6 75247948 75248073 -107167169 + L2 LINE L2 1824 1949 -1365 2533 106 106 39 chr6 75248487 75248684 -107166558 + LTR22B LTR ERVK 1 183 -309 2135 101 3 3 chr6 75248684 75248981 -107166261 - AluY SINE Alu -14 297 1 2533 106 106 39 chr6 75248981 75249244 -107165998 + LTR22B LTR ERVK 183 492 0 278 49 24 0 chr6 75249761 75249802 -107165440 - MADE1 DNA Mariner -2 78 37 1586 212 73 18 chr6 75251569 75252007 -107163235 - MLT1C LTR MaLR 0 467 6 21 0 0 0 chr6 75252473 75252494 -107162748 + AT_rich Low_complexity Low_complexity 1 21 0 953 306 113 29 chr6 75253480 75254018 -107161224 - L2 LINE L2 -2 3311 2734 393 313 55 28 chr6 75254027 75254209 -107161033 - L1ME1 LINE L1 -92 6074 5888 905 192 84 29 chr6 75254215 75254542 -107160700 + MLT1A1 LTR MaLR 2 392 -4 570 250 6 6 chr6 75254557 75254729 -107160513 - L1ME1 LINE L1 -278 5888 5717 1988 222 28 19 chr6 75254858 75255426 -107159816 - L1MC3 LINE L1 -16 7769 7197 888 204 129 5 chr6 75255434 75255766 -107159476 - L1ME1 LINE L1 -563 5601 5218 * 9924 86 9 3 chr6 75255759 75257228 -107158014 - L1PA7 LINE L1 -1221 4925 3448 6546 75 6 1 chr6 75257229 75258439 -107156803 + L1PA7 LINE L1 4938 6151 -3 256 146 18 0 chr6 75258444 75258506 -107156736 - L1P LINE L1 -2421 3725 3663 563 262 130 29 chr6 75258519 75258966 -107156276 - L1ME1 LINE L1 -969 5177 4686 816 256 46 23 chr6 75259109 75259159 -107156083 - L1ME1 LINE L1 -1973 4173 4126 2222 92 9 31 chr6 75259159 75259476 -107155766 - AluY SINE Alu -1 310 1 816 256 46 23 chr6 75259476 75259776 -107155466 - L1ME1 LINE L1 -2020 4126 3815 1468 65 32 9 chr6 75260493 75260709 -107154533 - pTR5 LTR ERV1 -2046 392 172 338 248 10 0 chr6 75260712 75260813 -107154429 - LTR30 LTR ERV1 -80 642 541 2933 129 75 37 chr6 75260814 75261597 -107153645 - pTR5 LTR ERV1 -417 2021 743 2835 3 0 0 chr6 75262290 75262596 -107152646 + AluYa5 SINE Alu 1 306 -5 518 262 69 0 chr6 75265031 75265176 -107150066 + MIR SINE MIR 31 185 -77 1048 189 52 22 chr6 75265432 75265702 -107149540 - MLT1C LTR MaLR -7 460 183 2221 88 3 20 chr6 75265707 75266001 -107149241 - AluY SINE Alu -22 289 1 2101 117 7 0 chr6 75266010 75266300 -107148942 - AluSx SINE Alu -20 292 1 2129 103 11 0 chr6 75266611 75266915 -107148327 - AluSx SINE Alu 0 307 1 202 259 35 0 chr6 75267028 75267086 -107148156 - L2 LINE L2 -1067 2247 2188 462 319 49 37 chr6 75267830 75267995 -107147247 + MIR SINE MIR 10 182 -80 2032 150 0 6 chr6 75267995 75268308 -107146934 - AluJo SINE Alu 0 312 2 462 319 49 37 chr6 75268308 75268377 -107146865 + MIR SINE MIR 182 249 -13 2491 93 58 0 chr6 75268605 75268949 -107146293 - THE1B LTR MaLR 0 364 1 1647 191 84 9 chr6 75269872 75270302 -107144940 - MLT1C LTR MaLR 0 467 6 1477 135 100 0 chr6 75271972 75272202 -107143040 - AluSx SINE Alu -59 253 1 321 289 111 44 chr6 75272951 75273176 -107142066 - L1MC4a LINE L1 -1896 5912 5673 670 190 76 38 chr6 75273508 75273719 -107141523 + MER20 DNA MER1_type 1 219 0 1209 196 48 40 chr6 75274661 75275013 -107140229 + MLT1B LTR MaLR 21 375 -15 826 218 18 9 chr6 75275483 75275703 -107139539 + L1MB3 LINE L1 5960 6181 -2 902 160 46 0 chr6 75276687 75276862 -107138380 - MER57A LTR ERV1 -220 183 1 579 318 141 36 chr6 75276926 75277081 -107138161 - L2 LINE L2 -558 2756 2619 3753 110 9 9 chr6 75277081 75277635 -107137607 - MER41A LTR ERV1 0 554 1 579 318 141 36 chr6 75277635 75278252 -107136990 - L2 LINE L2 -695 2619 1903 4345 153 24 41 chr6 75278342 75278855 -107136387 + L1MB2 LINE L1 5287 5808 -363 2301 92 23 0 chr6 75278855 75279158 -107136084 + AluY SINE Alu 1 310 -1 342 0 0 0 chr6 75279167 75279205 -107136037 + (TG)n Simple_repeat Simple_repeat 2 39 0 4345 153 24 41 chr6 75279205 75279575 -107135667 + L1MB2 LINE L1 5816 6164 -7 1067 359 48 27 chr6 75279667 75280370 -107134872 - L2 LINE L2 -1517 1797 1080 414 284 31 49 chr6 75281296 75281458 -107133784 - MIR SINE MIR -92 170 12 261 233 12 70 chr6 75281857 75281943 -107133299 + MIR SINE MIR 165 245 -17 2011 105 0 61 chr6 75282031 75282368 -107132874 + AluSx SINE Alu 1 312 0 618 224 65 28 chr6 75282803 75283017 -107132225 - MLT1H1 LTR MaLR -42 513 292 760 239 153 63 chr6 75283741 75283875 -107131367 - MLT1H1 LTR MaLR -2 553 432 1750 183 8 27 chr6 75283875 75284247 -107130995 + MLT1A1 LTR MaLR 1 365 0 760 239 153 63 chr6 75284247 75284538 -107130704 - MLT1H1 LTR MaLR -123 432 90 191 242 0 0 chr6 75284639 75284672 -107130570 - L2 LINE L2 -19 3253 3221 1923 125 69 0 chr6 75284838 75285126 -107130116 - AluSx SINE Alu -4 308 1 263 218 35 35 chr6 75285229 75285316 -107129926 - MLT1H1 LTR MaLR -463 92 6 202 312 86 0 chr6 75285486 75285579 -107129663 + MIR SINE MIR 52 152 -110 202 281 12 49 chr6 75285701 75285783 -107129459 + MIR SINE MIR 51 129 -79 11135 173 21 6 chr6 75286326 75288373 -107126869 - L1M1 LINE L1 -532 5770 3665 180 0 0 0 chr6 75288373 75288393 -107126849 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 11135 173 21 6 chr6 75288393 75289150 -107126092 - L1M1 LINE L1 -2637 3665 2921 21 0 0 0 chr6 75289156 75289177 -107126065 + AT_rich Low_complexity Low_complexity 1 21 0 2034 169 8 8 chr6 75289328 75289683 -107125559 + MLT2D LTR ERVL 3 357 -57 180 0 0 0 chr6 75289683 75289703 -107125539 + (TC)n Simple_repeat Simple_repeat 1 20 0 189 224 0 0 chr6 75289708 75289766 -107125476 + (TG)n Simple_repeat Simple_repeat 2 59 0 255 310 11 0 chr6 75289966 75290053 -107125189 - MIR SINE MIR -71 191 104 183 344 55 49 chr6 75291285 75291448 -107123794 - L2 LINE L2 -240 3032 2869 2155 101 3 3 chr6 75292769 75293075 -107122167 + AluSc SINE Alu 1 306 -3 198 360 96 16 chr6 75293301 75293426 -107121816 + L2 LINE L2 3136 3270 -2 1513 166 4 4 chr6 75294165 75294418 -107120824 - AluSg SINE Alu 0 310 58 551 135 0 11 chr6 75294425 75294514 -107120728 - AluSq/x SINE Alu -174 139 52 328 155 0 17 chr6 75294796 75294854 -107120388 + AluJ/FLAM SINE Alu 1 57 -245 201 74 0 0 chr6 75294863 75294890 -107120352 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 186 171 0 0 chr6 75295490 75295531 -107119711 + (TAA)n Simple_repeat Simple_repeat 1 41 0 585 224 96 99 chr6 75295845 75296219 -107119023 - MLT1J2 LTR MaLR 0 450 34 1483 193 89 6 chr6 75296546 75296883 -107118359 + MLT1A1 LTR MaLR 1 365 0 1679 209 76 12 chr6 75297563 75297969 -107117273 - MSTB1 LTR MaLR 0 432 1 186 43 0 0 chr6 75297975 75297998 -107117244 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1099 216 0 0 chr6 75298030 75298238 -107117004 - AluJo SINE Alu -104 208 1 2164 112 0 31 chr6 75299420 75299743 -107115499 - AluSq SINE Alu 0 313 1 35 0 0 0 chr6 75299757 75299792 -107115450 + AT_rich Low_complexity Low_complexity 1 35 0 397 257 136 42 chr6 75299872 75300137 -107115105 + L1ME4a LINE L1 5618 5907 -214 300 222 182 0 chr6 75300152 75300251 -107114991 + L1ME4a LINE L1 6001 6117 -4 314 275 33 11 chr6 75300328 75300419 -107114823 - L2 LINE L2 -523 2791 2699 354 259 39 116 chr6 75300489 75300721 -107114521 - MER102a DNA MER1_type -1 329 116 180 163 54 87 chr6 75301264 75301356 -107113886 + L3b LINE CR1 1298 1386 -197 22 0 0 0 chr6 75301447 75301469 -107113773 + AT_rich Low_complexity Low_complexity 1 22 0 314 235 97 56 chr6 75301963 75302159 -107113083 + HAL1 LINE L1 998 1201 -1306 6063 143 26 7 chr6 75302249 75302290 -107112952 - HSMAR2 DNA Mariner -13 1289 1250 1844 68 0 64 chr6 75302290 75302555 -107112687 + AluSg1 SINE Alu 36 283 -26 6063 143 26 7 chr6 75302555 75303532 -107111710 - HSMAR2 DNA Mariner -52 1250 251 253 259 15 23 chr6 75303678 75303809 -107111433 + (TA)n Simple_repeat Simple_repeat 2 131 0 970 138 7 0 chr6 75303990 75304142 -107111100 + HSMAR2 DNA Mariner 6 158 -1144 222 37 0 0 chr6 75304285 75304312 -107110930 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 187 268 0 0 chr6 75304318 75304359 -107110883 - L2 LINE L2 -10 3262 3222 238 311 14 0 chr6 75304655 75304729 -107110513 - MIR SINE MIR -97 165 91 359 293 134 6 chr6 75304812 75304969 -107110273 - MIR3 SINE MIR -30 178 2 1149 273 13 10 chr6 75305135 75305439 -107109803 - MER69 DNA AcHobo -920 306 2 329 308 155 32 chr6 75305774 75306115 -107109127 - LTR33 LTR ERVL -121 400 18 23 0 0 0 chr6 75306198 75306221 -107109021 + AT_rich Low_complexity Low_complexity 1 23 0 224 109 31 47 chr6 75306281 75306345 -107108897 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 250 248 157 89 chr6 75307252 75307420 -107107822 + MIR SINE MIR 20 196 -66 201 74 0 0 chr6 75308501 75308528 -107106714 + (TA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr6 75308784 75308813 -107106429 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 75309388 75309412 -107105830 + AT_rich Low_complexity Low_complexity 1 24 0 213 200 147 27 chr6 75309412 75309487 -107105755 + MIR SINE MIR 124 207 -55 229 204 71 0 chr6 75309487 75309585 -107105657 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 29 0 0 0 chr6 75309621 75309650 -107105592 + AT_rich Low_complexity Low_complexity 1 29 0 760 176 7 0 chr6 75311699 75311835 -107103407 + MER3 DNA MER1_type 73 209 0 25 83 0 0 chr6 75313251 75313311 -107101931 + AT_rich Low_complexity Low_complexity 1 60 0 290 342 72 13 chr6 75314492 75314644 -107100598 + MIR SINE MIR 47 207 -55 233 256 43 0 chr6 75314644 75314761 -107100481 + (TAGA)n Simple_repeat Simple_repeat 2 123 0 24 0 0 0 chr6 75314778 75314802 -107100440 + AT_rich Low_complexity Low_complexity 1 24 0 223 216 54 0 chr6 75315143 75315217 -107100025 + T-rich Low_complexity Low_complexity 1 78 0 185 323 10 50 chr6 75315524 75315623 -107099619 + MER5B DNA MER1_type 73 167 -11 34 55 0 0 chr6 75315676 75315731 -107099511 + AT_rich Low_complexity Low_complexity 1 55 0 2388 41 0 0 chr6 75317349 75317640 -107097602 + L1PA5 LINE L1 5862 6152 -2 25 0 0 0 chr6 75317756 75317781 -107097461 + AT_rich Low_complexity Low_complexity 1 25 0 442 251 64 43 chr6 75317980 75318167 -107097075 - MER117 DNA MER1_type -2 195 5 2146 174 28 46 chr6 75318661 75319097 -107096145 - MSTA LTR MaLR 0 428 1 293 211 0 0 chr6 75319443 75319500 -107095742 + LTR33A LTR ERVL 467 523 0 2286 102 0 0 chr6 75320277 75320581 -107094661 - AluSx SINE Alu -8 304 1 23 0 0 0 chr6 75321586 75321609 -107093633 + AT_rich Low_complexity Low_complexity 1 23 0 347 279 41 8 chr6 75321888 75322010 -107093232 + L2 LINE L2 3169 3294 -19 379 259 35 0 chr6 75322238 75322354 -107092888 - LTR33 LTR ERVL -23 498 379 1628 196 41 66 chr6 75322365 75322832 -107092410 - MER31B LTR ERV1 -11 650 1 775 251 109 0 chr6 75323179 75323390 -107091852 + MIR SINE MIR 22 255 -7 2232 100 0 0 chr6 75323488 75323789 -107091453 + AluY SINE Alu 1 301 -10 689 231 28 79 chr6 75324797 75325087 -107090155 + ORSL DNA AcHobo 1 275 0 258 282 82 0 chr6 75326700 75326785 -107088457 - MIR SINE MIR -158 104 13 23 0 0 0 chr6 75328765 75328788 -107086454 + AT_rich Low_complexity Low_complexity 1 23 0 33 25 0 0 chr6 75329546 75329586 -107085656 + AT_rich Low_complexity Low_complexity 1 40 0 21 82 0 0 chr6 75330590 75330639 -107084603 + AT_rich Low_complexity Low_complexity 1 49 0 318 296 53 109 chr6 75331425 75331672 -107083570 + MIR SINE MIR 3 235 -27 195 364 56 20 chr6 75332003 75332198 -107083044 - MIR SINE MIR -14 248 47 263 368 11 21 chr6 75332716 75332811 -107082431 - MIR SINE MIR -77 131 38 605 229 0 16 chr6 75333230 75333352 -107081890 - MER63 DNA MER1_type -276 786 41 42 57 0 0 chr6 75334326 75334396 -107080846 + AT_rich Low_complexity Low_complexity 1 70 0 372 328 61 17 chr6 75334860 75335040 -107080202 - MER5A DNA MER1_type -1 188 1 244 409 16 5 chr6 75335121 75335307 -107079935 + L2 LINE L2 2862 3049 -223 1086 214 37 0 chr6 75335445 75335660 -107079582 + MER58A DNA MER1_type 2 224 0 720 238 14 42 chr6 75335875 75336089 -107079153 + MER3 DNA MER1_type 2 209 0 180 152 0 0 chr6 75336336 75336369 -107078873 + T-rich Low_complexity Low_complexity 2 34 0 5332 38 0 0 chr6 75337648 75338282 -107076960 + L1PA5 LINE L1 5506 6139 -15 264 30 0 0 chr6 75338282 75338315 -107076927 + (TA)n Simple_repeat Simple_repeat 2 34 0 350 41 0 0 chr6 75338846 75338895 -107076347 - L1PA7 LINE L1 -243 5911 5863 1841 65 0 16 chr6 75338895 75339142 -107076100 + L1PA7 LINE L1 5904 6146 -8 213 39 0 0 chr6 75339533 75339559 -107075683 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 658 250 62 29 chr6 75340469 75340677 -107074565 + MER20 DNA MER1_type 1 215 -4 368 370 157 17 chr6 75341883 75342637 -107072605 - L2 LINE L2 -497 2817 1959 384 336 71 21 chr6 75342921 75343084 -107072158 - MIR3 SINE MIR -31 177 6 330 238 143 48 chr6 75343481 75343628 -107071614 + MIR3 SINE MIR 16 176 -32 232 147 0 0 chr6 75343733 75343767 -107071475 + Charlie8 DNA MER1_type 1395 1428 -989 219 320 13 0 chr6 75345225 75345303 -107069939 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 643 292 20 15 chr6 75345305 75345500 -107069742 - MIR SINE MIR -66 196 1 266 349 47 0 chr6 75346550 75346636 -107068606 - L2 LINE L2 -41 3231 3142 21 0 0 0 chr6 75346838 75346859 -107068383 + AT_rich Low_complexity Low_complexity 1 21 0 203 255 0 0 chr6 75348540 75348591 -107066651 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 977 105 52 0 chr6 75348835 75348988 -107066254 - L1PA13 LINE L1 -6 6157 5997 537 99 0 25 chr6 75348988 75349069 -107066173 + L1PA13 LINE L1 5903 5981 -187 218 316 31 31 chr6 75349399 75349497 -107065745 - MER5B DNA MER1_type -79 99 2 681 226 57 11 chr6 75349502 75349679 -107065563 - MER5A DNA MER1_type -3 186 2 2117 207 32 48 chr6 75349713 75350278 -107064964 + L1PA16 LINE L1 5576 6131 -35 1058 109 36 16 chr6 75350270 75350462 -107064780 + L1MA1 LINE L1 5957 6152 -150 * 981 102 0 36 chr6 75350507 75350673 -107064569 + L1MA1 LINE L1 6143 6302 0 22 35 0 0 chr6 75351759 75351788 -107063454 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 75351897 75351925 -107063317 + AT_rich Low_complexity Low_complexity 1 28 0 1313 185 34 55 chr6 75352684 75352976 -107062266 - AluJo SINE Alu -26 286 1 27 29 0 0 chr6 75353429 75353463 -107061779 + AT_rich Low_complexity Low_complexity 1 34 0 262 213 76 0 chr6 75353903 75354046 -107061196 - L1ME LINE L1 -647 5519 5352 3536 286 97 45 chr6 75354453 75356365 -107058877 - L2 LINE L2 -11 3302 1288 21 0 0 0 chr6 75356659 75356680 -107058562 + AT_rich Low_complexity Low_complexity 1 21 0 731 171 8 0 chr6 75356937 75357066 -107058176 + FLAM_C SINE Alu 3 132 -1 847 229 39 39 chr6 75357814 75358022 -107057220 - MIR SINE MIR -21 241 31 1631 150 3 53 chr6 75358022 75358342 -107056900 - AluJb SINE Alu -5 307 4 847 229 39 39 chr6 75358342 75358364 -107056878 - MIR SINE MIR -230 32 11 263 305 39 39 chr6 75359236 75359364 -107055878 + MIR SINE MIR 125 252 -10 29 28 0 0 chr6 75359520 75359556 -107055686 + AT_rich Low_complexity Low_complexity 1 36 0 346 282 79 44 chr6 75359583 75359899 -107055343 - HAL1 LINE L1 -1020 1487 1161 22 80 0 0 chr6 75360619 75360669 -107054573 + AT_rich Low_complexity Low_complexity 1 50 0 4983 76 1 0 chr6 75360906 75361554 -107053688 + L1PA7 LINE L1 5502 6150 -4 2881 148 69 6 chr6 75361724 75362245 -107052997 + L1MB2 LINE L1 5617 6170 -1 298 269 15 8 chr6 75362289 75362419 -107052823 + (TA)n Simple_repeat Simple_repeat 2 132 0 408 326 126 56 chr6 75362461 75363066 -107052176 - L1MC4a LINE L1 -1895 5913 5267 23 54 0 0 chr6 75363089 75363126 -107052116 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 75363437 75363460 -107051782 + AT_rich Low_complexity Low_complexity 1 23 0 2620 77 8 3 chr6 75364471 75364824 -107050418 - THE1A LTR MaLR 0 355 1 8349 107 2 0 chr6 75364824 75365970 -107049272 - THE1A-int LTR MaLR 0 1580 433 912 99 0 8 chr6 75365970 75366067 -107049175 + MLT2A1 LTR ERVL 307 404 -40 351 0 0 0 chr6 75366067 75366106 -107049136 + (TG)n Simple_repeat Simple_repeat 2 40 0 912 99 0 8 chr6 75366106 75366139 -107049103 + MLT2A1 LTR ERVL 404 436 -8 22 0 0 0 chr6 75367202 75367224 -107048018 + AT_rich Low_complexity Low_complexity 1 22 0 2045 130 13 0 chr6 75368931 75369231 -107046011 - AluSq SINE Alu -9 304 1 214 353 43 9 chr6 75374461 75374577 -107040665 + L2 LINE L2 1833 1952 -1362 381 320 105 0 chr6 75374721 75374893 -107040349 + MIR SINE MIR 59 248 -14 196 219 14 14 chr6 75374930 75375003 -107040239 + (CACCAT)n Simple_repeat Simple_repeat 1 73 0 183 129 0 0 chr6 75376905 75376936 -107038306 + (CA)n Simple_repeat Simple_repeat 2 32 0 226 314 8 40 chr6 75378811 75378935 -107036307 + CT-rich Low_complexity Low_complexity 3 122 0 2108 119 3 0 chr6 75379755 75380048 -107035194 - AluSx SINE Alu -18 294 1 1712 164 4 0 chr6 75380452 75380733 -107034509 + AluJb SINE Alu 4 285 -27 22 35 0 0 chr6 75381334 75381363 -107033879 + AT_rich Low_complexity Low_complexity 1 29 0 242 287 113 68 chr6 75381403 75382163 -107033079 - L1M4 LINE L1 -1535 4611 3818 360 0 0 0 chr6 75382196 75382236 -107033006 + (CA)n Simple_repeat Simple_repeat 2 41 0 386 285 72 89 chr6 75382527 75383011 -107032231 - L1M4 LINE L1 -2701 3445 2970 11326 97 6 1 chr6 75383953 75386342 -107028900 + L1PA7 LINE L1 3744 6137 -17 22 70 0 0 chr6 75386446 75386489 -107028753 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr6 75387784 75387807 -107027435 + AT_rich Low_complexity Low_complexity 1 23 0 294 143 0 0 chr6 75388044 75388093 -107027149 + (CA)n Simple_repeat Simple_repeat 2 50 0 688 279 51 43 chr6 75388179 75388455 -107026787 - L2 LINE L2 0 3313 3036 1639 162 3 57 chr6 75389394 75389513 -107025729 + AluJb SINE Alu 1 125 -187 285 51 0 0 chr6 75389513 75389552 -107025690 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 366 23 0 0 chr6 75389553 75389596 -107025646 + (TA)n Simple_repeat Simple_repeat 2 44 0 1639 162 3 57 chr6 75389596 75389788 -107025454 + AluJb SINE Alu 124 297 -15 344 337 79 7 chr6 75389811 75389957 -107025285 - MIR SINE MIR -58 150 38 384 316 129 29 chr6 75390156 75390434 -107024808 - L2 LINE L2 0 3313 3008 24 53 0 0 chr6 75390940 75390978 -107024264 + AT_rich Low_complexity Low_complexity 1 38 0 271 241 0 0 chr6 75392215 75392273 -107022969 + MIR SINE MIR 180 237 -25 181 392 40 32 chr6 75393013 75393138 -107022104 + L3b LINE CR1 1457 1582 -1 180 0 0 0 chr6 75394327 75394347 -107020895 + (A)n Simple_repeat Simple_repeat 1 20 0 205 300 0 17 chr6 75395745 75395805 -107019437 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 279 0 0 0 chr6 75395889 75395920 -107019322 + (TG)n Simple_repeat Simple_repeat 2 32 0 181 188 21 42 chr6 75396357 75396405 -107018837 - MIR SINE MIR -136 126 80 940 114 60 22 chr6 75397353 75397537 -107017705 - L1MD3 LINE L1 -10 7985 7795 377 263 63 63 chr6 75398266 75398456 -107016786 - LTR33A LTR ERVL -51 472 283 7526 25 0 6 chr6 75398626 75399554 -107015688 - L1PA4 LINE L1 0 6155 5233 552 306 122 9 chr6 75399712 75399941 -107015301 - MIR SINE MIR -6 256 2 303 56 56 0 chr6 75399950 75400004 -107015238 + (TA)n Simple_repeat Simple_repeat 1 57 0 280 280 70 51 chr6 75400767 75400924 -107014318 - MIR SINE MIR -44 218 59 266 29 29 0 chr6 75400961 75400995 -107014247 - U2 snRNA snRNA -153 35 1 34764 37 2 0 chr6 75401817 75406827 -107008415 - L1PA4 LINE L1 -3 6152 1135 5384 50 44 8 chr6 75406869 75407573 -107007669 + L1P LINE L1 385 1113 -5033 694 157 17 0 chr6 75407610 75407725 -107007517 + FLAM_A SINE Alu 18 134 -8 23 86 0 0 chr6 75408413 75408471 -107006771 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 54 chr6 75410185 75410200 -107005042 + AT_rich Low_complexity Low_complexity 1 15 -20 1932 150 3 0 chr6 75410200 75410486 -107004756 - AluSx SINE Alu -24 288 2 22 0 0 54 chr6 75410486 75410507 -107004735 + AT_rich Low_complexity Low_complexity 15 35 0 216 163 20 20 chr6 75410963 75411012 -107004230 + (TA)n Simple_repeat Simple_repeat 1 49 0 360 207 296 15 chr6 75411149 75411284 -107003958 - MIR SINE MIR -2 260 88 26 30 0 0 chr6 75411623 75411656 -107003586 + AT_rich Low_complexity Low_complexity 1 33 0 206 356 37 37 chr6 75412887 75413050 -107002192 - L3 LINE CR1 -153 1424 1262 245 343 30 8 chr6 75413795 75413929 -107001313 - L2 LINE L2 0 3272 3136 182 271 10 94 chr6 75414160 75414256 -107000986 - MIR SINE MIR -72 190 103 223 300 54 151 chr6 75414890 75415112 -107000130 - L2 LINE L2 -1 3271 3094 1695 88 4 0 chr6 75415112 75415351 -106999891 + L1PA7 LINE L1 5912 6151 -3 223 300 54 151 chr6 75415351 75415478 -106999764 - L2 LINE L2 -178 3094 2956 21 36 0 0 chr6 75415820 75415848 -106999394 + AT_rich Low_complexity Low_complexity 1 28 0 185 269 151 11 chr6 75416072 75416165 -106999077 - L2 LINE L2 0 3313 3208 1319 315 161 23 chr6 75416168 75417366 -106997876 - L2 LINE L2 -13 3300 1930 2193 118 0 3 chr6 75418064 75418377 -106996865 + AluSq SINE Alu 1 312 -1 273 360 22 15 chr6 75418676 75418812 -106996430 - MIR3 SINE MIR -51 157 21 363 44 0 0 chr6 75418839 75418884 -106996358 + (TG)n Simple_repeat Simple_repeat 2 46 0 251 357 58 54 chr6 75420220 75420649 -106994593 + L2 LINE L2 1598 2028 -1286 327 354 15 8 chr6 75420858 75420988 -106994254 + L2 LINE L2 2899 3029 -243 28 29 0 0 chr6 75421416 75421451 -106993791 + AT_rich Low_complexity Low_complexity 1 35 0 1465 189 6 41 chr6 75421581 75421899 -106993343 - AluJo SINE Alu -5 307 1 238 299 0 0 chr6 75423174 75423241 -106992001 - L1ME4a LINE L1 -76 6045 5979 30 59 0 0 chr6 75423275 75423326 -106991916 + AT_rich Low_complexity Low_complexity 1 51 0 307 259 98 9 chr6 75423577 75423689 -106991553 - L1ME4a LINE L1 -470 5651 5530 2320 64 6 16 chr6 75423884 75424198 -106991044 - AluY SINE Alu 0 311 1 22 0 0 0 chr6 75424767 75424789 -106990453 + AT_rich Low_complexity Low_complexity 1 22 0 241 297 27 0 chr6 75425372 75425446 -106989796 + GA-rich Low_complexity Low_complexity 1 76 0 297 381 16 8 chr6 75425541 75425667 -106989575 + MER5A DNA MER1_type 56 182 -7 280 343 75 0 chr6 75427152 75427286 -106987956 + MIR3 SINE MIR 34 177 -31 1965 154 0 3 chr6 75428130 75428428 -106986814 - AluSx SINE Alu -15 297 1 2317 54 0 0 chr6 75429333 75429627 -106985615 - L1PA7 LINE L1 0 6154 5861 2583 93 3 0 chr6 75429658 75430012 -106985230 + THE1A LTR MaLR 1 355 0 7320 30 13 0 chr6 75430234 75431297 -106983945 - L1PA4 LINE L1 -20 6135 5064 4217 35 0 2 chr6 75431294 75431811 -106983431 + L1P LINE L1 3639 4154 -1992 * 345 47 0 0 chr6 75432262 75432305 -106982937 + (TG)n Simple_repeat Simple_repeat 2 44 0 25 75 0 0 chr6 75432413 75432466 -106982776 + AT_rich Low_complexity Low_complexity 1 53 0 28 48 0 0 chr6 75432784 75432826 -106982416 + AT_rich Low_complexity Low_complexity 1 42 0 250 235 54 134 chr6 75433701 75433850 -106981392 + L2 LINE L2 3133 3269 -3 492 18 0 0 chr6 75433963 75434020 -106981222 + (TA)n Simple_repeat Simple_repeat 2 58 0 203 295 188 18 chr6 75434274 75434386 -106980856 + MIR SINE MIR 132 262 0 200 237 0 0 chr6 75435017 75435055 -106980187 + L2 LINE L2 3210 3247 -25 23 0 0 0 chr6 75436895 75436918 -106978324 + AT_rich Low_complexity Low_complexity 1 23 0 2198 153 13 23 chr6 75437002 75437400 -106977842 - L1MA3 LINE L1 -2 6303 5910 254 317 62 37 chr6 75437434 75437595 -106977647 - L2 LINE L2 -6 3307 3143 660 275 52 26 chr6 75438543 75438772 -106976470 - MIR SINE MIR -27 235 1 250 276 141 24 chr6 75439599 75439769 -106975473 + L1ME LINE L1 5629 5818 -303 254 206 15 15 chr6 75440033 75440101 -106975141 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 423 211 103 49 chr6 75440723 75440908 -106974334 - L1MEd LINE L1 -4882 1237 1043 253 197 30 0 chr6 75441049 75441115 -106974127 + (TA)n Simple_repeat Simple_repeat 1 68 0 395 158 76 23 chr6 75441154 75441325 -106973917 + (TA)n Simple_repeat Simple_repeat 1 180 0 558 285 48 45 chr6 75441407 75441520 -106973722 - L1MEd LINE L1 -5219 900 789 1830 125 14 20 chr6 75441520 75441815 -106973427 - AluSx SINE Alu -19 293 1 558 285 48 45 chr6 75441815 75442038 -106973204 - L1MEd LINE L1 -5330 789 563 2181 119 16 47 chr6 75442199 75442586 -106972656 + THE1C LTR MaLR 1 375 0 3294 284 147 11 chr6 75442700 75444289 -106970953 - L2 LINE L2 -1 3312 1514 2215 117 0 7 chr6 75445750 75446058 -106969184 - AluSx SINE Alu -4 308 3 21 0 0 0 chr6 75446255 75446276 -106968966 + AT_rich Low_complexity Low_complexity 1 21 0 374 355 70 54 chr6 75447647 75448456 -106966786 - L2 LINE L2 -586 2728 1907 25 31 0 0 chr6 75449868 75449900 -106965342 + AT_rich Low_complexity Low_complexity 1 32 0 23 86 0 0 chr6 75449929 75449987 -106965255 + AT_rich Low_complexity Low_complexity 1 58 0 408 285 31 23 chr6 75450579 75450709 -106964533 + L2 LINE L2 3182 3312 -1 21 57 0 0 chr6 75451106 75451141 -106964101 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 75451663 75451698 -106963544 + AT_rich Low_complexity Low_complexity 1 35 0 669 193 0 8 chr6 75453365 75453484 -106961758 + FLAM_C SINE Alu 1 118 -25 21 0 0 0 chr6 75453757 75453778 -106961464 + AT_rich Low_complexity Low_complexity 1 21 0 196 396 14 7 chr6 75455319 75455458 -106959784 + MIR SINE MIR 47 186 -76 297 135 0 0 chr6 75455685 75455737 -106959505 + (TC)n Simple_repeat Simple_repeat 2 53 0 306 87 0 0 chr6 75455739 75455785 -106959457 + (CA)n Simple_repeat Simple_repeat 1 46 0 3820 191 62 16 chr6 75456286 75457026 -106958216 + L1MA3 LINE L1 11 784 -6781 907 141 0 39 chr6 75457037 75457193 -106958049 - AluJb SINE Alu 0 312 163 641 144 88 0 chr6 75457201 75457326 -106957916 + L1MA3 LINE L1 1324 1459 -6106 14895 180 32 14 chr6 75457329 75457347 -106957895 + L1MA3 LINE L1 3487 3503 -4221 207 0 0 0 chr6 75457347 75457370 -106957872 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 14895 180 32 14 chr6 75457370 75458417 -106956825 + L1MA3 LINE L1 3503 4530 -3194 2250 148 17 12 chr6 75458417 75458829 -106956413 + L1MA2 LINE L1 5891 6304 0 14895 180 32 14 chr6 75458829 75461921 -106953321 + L1MA3 LINE L1 4530 7724 0 703 213 31 71 chr6 75461934 75462125 -106953117 + MLT1C LTR MaLR 200 397 -70 2572 107 3 0 chr6 75462125 75462479 -106952763 + THE1A LTR MaLR 1 355 0 11216 102 11 1 chr6 75462479 75464043 -106951199 + THE1A-int LTR MaLR 1 1580 0 2458 103 6 3 chr6 75464047 75464397 -106950845 + THE1A LTR MaLR 5 355 0 703 213 31 71 chr6 75464397 75464424 -106950818 + MLT1C LTR MaLR 399 415 -52 245 234 31 0 chr6 75464537 75464601 -106950641 + A-rich Low_complexity Low_complexity 1 66 0 21 95 0 0 chr6 75464757 75464820 -106950422 + AT_rich Low_complexity Low_complexity 1 63 0 291 287 37 0 chr6 75466423 75466531 -106948711 - HAL1b LINE L1 -170 1178 1067 1360 274 75 24 chr6 75466696 75467419 -106947823 - HAL1b LINE L1 -516 832 73 260 200 12 0 chr6 75467873 75467953 -106947289 + CT-rich Low_complexity Low_complexity 2 82 0 486 135 0 21 chr6 75468255 75468351 -106946891 + L1MA5A LINE L1 6201 6294 -3 979 213 33 0 chr6 75470943 75471187 -106944055 + L1MA8 LINE L1 6037 6288 -3 237 33 0 0 chr6 75472073 75472103 -106943139 + (TTTAA)n Simple_repeat Simple_repeat 5 34 0 29 98 0 0 chr6 75472140 75472232 -106943010 + AT_rich Low_complexity Low_complexity 1 92 0 1361 192 3 66 chr6 75472399 75472542 -106942700 + AluJo SINE Alu 5 155 -157 1973 133 57 28 chr6 75472542 75472896 -106942346 + THE1B LTR MaLR 1 364 0 10724 110 19 2 chr6 75472896 75474449 -106940793 + THE1B-int LTR MaLR 1 1580 0 2032 142 31 22 chr6 75474451 75474810 -106940432 + THE1B LTR MaLR 3 364 0 1361 192 3 66 chr6 75474810 75474881 -106940361 + AluJo SINE Alu 155 199 -113 1991 130 17 3 chr6 75474881 75475173 -106940069 + AluSg SINE Alu 1 296 -14 1361 192 3 66 chr6 75475173 75475270 -106939972 + AluJo SINE Alu 199 301 -11 4556 130 88 1 chr6 75475362 75476098 -106939144 - THE1B-int LTR MaLR -780 800 1 2494 121 8 6 chr6 75476098 75476461 -106938781 - THE1B LTR MaLR 0 364 1 1760 179 83 69 chr6 75476487 75476884 -106938358 - Charlie1 DNA MER1_type 0 2761 2371 186 43 0 0 chr6 75476884 75476907 -106938335 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3267 165 12 15 chr6 75476907 75477507 -106937735 - L1PB4 LINE L1 -11 6145 5548 1760 179 83 69 chr6 75477507 75477699 -106937543 - Charlie1 DNA MER1_type -389 2372 2163 251 338 13 0 chr6 75477698 75477775 -106937467 - Charlie1 DNA MER1_type -2683 78 1 * 2196 62 42 3 chr6 75477954 75478243 -106936999 + AluY SINE Alu 5 304 -7 573 234 185 19 chr6 75478391 75478596 -106936646 + MIR SINE MIR 3 241 -21 214 309 121 54 chr6 75479098 75479247 -106935995 - MIR SINE MIR -21 241 83 806 296 123 5 chr6 75479383 75479812 -106935430 - HAL1 LINE L1 -82 2425 1946 36 62 0 0 chr6 75480103 75480167 -106935075 + AT_rich Low_complexity Low_complexity 1 64 0 241 296 177 38 chr6 75481051 75481237 -106934005 + MLT1J LTR MaLR 145 356 -155 22 35 0 0 chr6 75481760 75481789 -106933453 + AT_rich Low_complexity Low_complexity 1 29 0 1541 143 84 42 chr6 75482797 75483153 -106932089 + THE1C LTR MaLR 5 375 0 9387 138 16 31 chr6 75483155 75484757 -106930485 + THE1C-int LTR MaLR 3 1580 0 1511 156 73 34 chr6 75484757 75485115 -106930127 + THE1C LTR MaLR 1 372 -3 336 24 0 0 chr6 75485570 75485611 -106929631 + (TG)n Simple_repeat Simple_repeat 2 42 0 1952 131 0 28 chr6 75486447 75486737 -106928505 - AluSx SINE Alu -30 282 1 906 271 19 12 chr6 75487277 75487535 -106927707 + MIR SINE MIR 1 260 -2 22 0 0 0 chr6 75490537 75490559 -106924683 + AT_rich Low_complexity Low_complexity 1 22 0 973 140 11 0 chr6 75491682 75491860 -106923382 + CT-rich Low_complexity Low_complexity 1 180 0 400 93 27 27 chr6 75491865 75491940 -106923302 + (TCCCC)n Simple_repeat Simple_repeat 5 79 0 35 41 0 0 chr6 75492668 75492717 -106922525 + AT_rich Low_complexity Low_complexity 1 49 0 28 0 0 0 chr6 75492726 75492754 -106922488 + AT_rich Low_complexity Low_complexity 1 28 0 192 333 95 0 chr6 75492771 75492834 -106922408 - L2 LINE L2 -55 3217 3149 21 0 0 0 chr6 75495110 75495131 -106920111 + AT_rich Low_complexity Low_complexity 1 21 0 2173 132 25 27 chr6 75495373 75495738 -106919504 - THE1B LTR MaLR 0 364 1 416 303 98 80 chr6 75495738 75495872 -106919370 - MLT1K LTR MaLR -51 537 407 2349 54 6 38 chr6 75495872 75496186 -106919056 - AluY SINE Alu -7 304 1 416 303 98 80 chr6 75496186 75496388 -106918854 - MLT1K LTR MaLR -181 407 195 21 36 0 0 chr6 75497635 75497663 -106917579 + AT_rich Low_complexity Low_complexity 1 28 0 1563 88 0 5 chr6 75499544 75499773 -106915469 - AluY SINE Alu 0 307 80 3709 129 11 89 chr6 75499773 75500507 -106914735 + LTR12 LTR ERV1 31 714 0 261 361 104 27 chr6 75500850 75501301 -106913941 - L2 LINE L2 -1 3312 2827 271 222 293 47 chr6 75501380 75501592 -106913650 - Charlie2 DNA MER1_type -2518 264 1 825 111 35 96 chr6 75501994 75502193 -106913049 - L1MA7 LINE L1 -5 6286 6100 814 140 34 62 chr6 75502202 75502380 -106912862 + L1MA8 LINE L1 5869 6041 -250 289 274 14 82 chr6 75503310 75503529 -106911713 - L1ME4a LINE L1 -55 6066 5863 25 51 0 0 chr6 75503630 75503669 -106911573 + AT_rich Low_complexity Low_complexity 1 39 0 189 171 0 0 chr6 75503719 75503754 -106911488 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 333 308 73 41 chr6 75503766 75504110 -106911132 - L1ME4a LINE L1 -448 5673 5319 297 0 0 0 chr6 75505201 75505234 -106910008 + (CA)n Simple_repeat Simple_repeat 2 34 0 561 288 116 30 chr6 75505235 75505537 -106909705 - L2 LINE L2 -86 3227 2900 2245 91 10 3 chr6 75506149 75506458 -106908784 - AluY SINE Alu 0 311 1 2077 143 42 25 chr6 75507620 75507978 -106907264 - THE1B LTR MaLR 0 364 1 539 261 167 6 chr6 75508599 75508779 -106906463 + MER3 DNA MER1_type 1 209 0 487 302 217 9 chr6 75508797 75509332 -106905910 + L2 LINE L2 2648 3306 -7 225 200 0 55 chr6 75510242 75510297 -106904945 + A-rich Low_complexity Low_complexity 2 53 0 25 51 0 0 chr6 75512553 75512592 -106902650 + AT_rich Low_complexity Low_complexity 1 39 0 737 251 20 15 chr6 75513851 75514046 -106901196 + AluJo SINE Alu 117 312 0 249 196 0 0 chr6 75514054 75514110 -106901132 + GA-rich Low_complexity Low_complexity 3 58 0 238 150 38 75 chr6 75514237 75514370 -106900872 + (CACAA)n Simple_repeat Simple_repeat 2 129 0 185 269 151 11 chr6 75514789 75514882 -106900360 - L2 LINE L2 0 3313 3208 1319 315 161 23 chr6 75514885 75516083 -106899159 - L2 LINE L2 -13 3300 1930 533 209 0 8 chr6 75516493 75516627 -106898615 + GA-rich Low_complexity Low_complexity 4 136 0 229 78 98 20 chr6 75516633 75516684 -106898558 - MLT2B2 LTR ERVL -2 518 464 210 83 83 0 chr6 75516692 75516740 -106898502 + (TA)n Simple_repeat Simple_repeat 1 52 0 2426 216 11 8 chr6 75516763 75517231 -106898011 - MLT2B2 LTR ERVL -46 469 1 2859 192 73 5 chr6 75517301 75517921 -106897321 + L1MC3 LINE L1 7114 7775 -10 3304 46 0 2 chr6 75518016 75518429 -106896813 - L1PA2 LINE L1 -2 6153 5742 23 68 0 0 chr6 75518473 75518517 -106896725 + AT_rich Low_complexity Low_complexity 1 44 0 182 306 0 0 chr6 75518771 75518820 -106896422 + L2 LINE L2 3220 3268 -4 2775 238 68 7 chr6 75519070 75519756 -106895486 + ERVL LTR ERVL 3877 4604 -1160 911 246 140 101 chr6 75519771 75520284 -106894958 - MLT1F LTR MaLR 0 542 10 22 0 0 0 chr6 75520672 75520694 -106894548 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 75522240 75522262 -106892980 + AT_rich Low_complexity Low_complexity 1 22 0 1274 188 71 14 chr6 75522450 75522732 -106892510 + AluJo SINE Alu 1 298 -14 639 163 0 0 chr6 75522756 75522879 -106892363 + GA-rich Low_complexity Low_complexity 4 126 0 623 101 59 236 chr6 75522910 75523147 -106892095 - MER7A DNA MER2_type -153 193 1 290 326 42 0 chr6 75523318 75523462 -106891780 - L1MC4a LINE L1 -1930 5878 5729 199 369 75 21 chr6 75524484 75524671 -106890571 + L2 LINE L2 1705 1901 -1413 304 352 52 5 chr6 75525212 75525405 -106889837 - L1MC4a LINE L1 -471 5650 5449 248 266 237 14 chr6 75525691 75525830 -106889412 + MIR SINE MIR 67 236 -26 22 56 0 0 chr6 75525916 75525952 -106889290 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 75526620 75526642 -106888600 + AT_rich Low_complexity Low_complexity 1 22 0 7277 35 2 0 chr6 75528516 75529778 -106885464 - L1PA4 LINE L1 -385 5770 4506 3066 29 11 0 chr6 75529778 75530154 -106885088 + L1PA4 LINE L1 5776 6155 0 3085 43 0 3 chr6 75531068 75531486 -106883756 - L1PA3 LINE L1 0 6155 5762 15278 48 11 4 chr6 75531486 75533408 -106881834 + L1P LINE L1 192 2127 -4019 430 296 0 0 chr6 75533903 75534018 -106881224 + MIR SINE MIR 53 167 -95 526 351 78 53 chr6 75534111 75534601 -106880641 + L1MEd LINE L1 58 559 -5560 224 200 33 0 chr6 75534685 75534745 -106880497 + A-rich Low_complexity Low_complexity 5 66 0 307 294 87 0 chr6 75534930 75535056 -106880186 + L1MEd LINE L1 904 1040 -5079 413 339 106 59 chr6 75535171 75535939 -106879303 - L2 LINE L2 -54 3259 2451 584 327 95 33 chr6 75535951 75536257 -106878985 - L3 LINE CR1 -61 1516 1192 222 343 203 13 chr6 75536457 75536693 -106878549 - L3 LINE CR1 -418 1159 879 21 0 0 0 chr6 75537651 75537672 -106877570 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr6 75537987 75538034 -106877208 + AT_rich Low_complexity Low_complexity 1 47 0 230 306 154 50 chr6 75538237 75538619 -106876623 - L2 LINE L2 -1137 2177 1756 229 273 128 67 chr6 75538853 75538960 -106876282 + HAL1 LINE L1 1334 1433 -1074 2262 70 20 7 chr6 75538960 75539262 -106875980 + AluY SINE Alu 1 306 -5 229 273 128 67 chr6 75539262 75539436 -106875806 + HAL1 LINE L1 1433 1632 -875 266 276 94 15 chr6 75539894 75540097 -106875145 + L1MEd LINE L1 2119 2337 -3792 36 0 0 0 chr6 75540423 75540459 -106874783 + AT_rich Low_complexity Low_complexity 1 36 0 423 300 0 9 chr6 75540875 75540985 -106874257 + L2 LINE L2 3204 3312 -1 233 250 62 42 chr6 75541348 75541444 -106873798 - MIR3 SINE MIR -17 191 94 27 45 0 45 chr6 75543628 75543695 -106871547 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr6 75544633 75544663 -106870579 + AT_rich Low_complexity Low_complexity 1 30 0 1430 189 0 32 chr6 75547007 75547292 -106867950 + AluJo SINE Alu 1 276 -36 22 35 0 0 chr6 75548663 75548692 -106866550 + AT_rich Low_complexity Low_complexity 1 29 0 31 26 0 0 chr6 75549878 75549916 -106865326 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr6 75551230 75551259 -106863983 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr6 75551561 75551601 -106863641 + AT_rich Low_complexity Low_complexity 1 40 0 33 66 0 0 chr6 75551826 75551887 -106863355 + AT_rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr6 75552042 75552073 -106863169 + AT_rich Low_complexity Low_complexity 1 31 0 1863 145 3 7 chr6 75552073 75552386 -106862856 + AluSx SINE Alu 1 312 0 284 321 142 12 chr6 75552472 75552634 -106862608 - MIR SINE MIR -60 202 20 292 204 0 0 chr6 75553868 75553922 -106861320 + MER5C DNA MER1_type 3 56 -268 187 184 0 53 chr6 75554083 75554121 -106861121 - MER5C DNA MER1_type -288 36 1 207 0 0 0 chr6 75555989 75556012 -106859230 + (GA)n Simple_repeat Simple_repeat 2 24 0 791 157 38 0 chr6 75556547 75556706 -106858536 + L1MB2 LINE L1 6005 6169 -2 1161 206 45 0 chr6 75557145 75557204 -106858038 - L1MA8 LINE L1 -3 6288 6233 279 0 0 0 chr6 75557204 75557235 -106858007 + (TA)n Simple_repeat Simple_repeat 2 32 0 1161 206 45 0 chr6 75557235 75557442 -106857800 - L1MA8 LINE L1 -58 6233 6010 992 47 78 0 chr6 75557993 75558121 -106857121 + MER85 DNA T2_type 1 138 -1 1155 170 9 27 chr6 75559023 75559246 -106855996 - MER20 DNA MER1_type 0 219 1 189 0 0 0 chr6 75559459 75559480 -106855762 + (T)n Simple_repeat Simple_repeat 1 21 0 2063 93 35 0 chr6 75559530 75559820 -106855422 + AluSx SINE Alu 1 300 -12 308 252 16 8 chr6 75560743 75560866 -106854376 + (TA)n Simple_repeat Simple_repeat 2 125 0 1887 156 0 7 chr6 75561528 75561823 -106853419 - AluSx SINE Alu -19 293 1 21 71 0 0 chr6 75561977 75562019 -106853223 + AT_rich Low_complexity Low_complexity 1 42 0 30 27 0 0 chr6 75562569 75562606 -106852636 + AT_rich Low_complexity Low_complexity 1 37 0 38 0 0 0 chr6 75563463 75563501 -106851741 + AT_rich Low_complexity Low_complexity 1 38 0 360 198 0 0 chr6 75566568 75566636 -106848606 + MIR SINE MIR 106 172 -90 1484 225 182 18 chr6 75566752 75567241 -106848001 - MER90 LTR ERV1 0 614 46 201 291 47 58 chr6 75567857 75567943 -106847299 + MIR SINE MIR 90 174 -88 22 35 0 0 chr6 75568844 75568873 -106846369 + AT_rich Low_complexity Low_complexity 1 29 0 1067 199 14 19 chr6 75568978 75569194 -106846048 - AluJo SINE Alu -22 290 76 797 314 89 33 chr6 75569413 75569987 -106845255 + L2 LINE L2 2305 2910 -404 282 228 38 0 chr6 75571226 75571305 -106843937 + (TA)n Simple_repeat Simple_repeat 1 82 0 691 64 0 11 chr6 75571476 75571570 -106843672 + L1PA5 LINE L1 6058 6150 -4 195 42 0 0 chr6 75573131 75573155 -106842087 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 245 297 68 25 chr6 75573169 75573287 -106841955 + L2 LINE L2 3191 3313 0 406 305 129 57 chr6 75573409 75573596 -106841646 + L2 LINE L2 2548 2720 -593 2238 64 0 7 chr6 75573596 75573876 -106841366 - AluY SINE Alu -16 295 18 406 305 129 57 chr6 75573876 75574400 -106840842 + L2 LINE L2 2720 3313 0 2035 149 0 7 chr6 75574420 75574721 -106840521 + AluSx SINE Alu 1 299 -13 243 0 0 0 chr6 75575214 75575241 -106840001 + (TG)n Simple_repeat Simple_repeat 2 28 0 2170 112 0 0 chr6 75576831 75577125 -106838117 + AluSx SINE Alu 1 294 -18 378 0 0 0 chr6 75577783 75577825 -106837417 + (TG)n Simple_repeat Simple_repeat 2 43 0 898 214 6 11 chr6 75579634 75579816 -106835426 - MER5A DNA MER1_type 0 189 9 287 270 40 0 chr6 75582119 75582193 -106833049 + MIR SINE MIR 114 190 -72 373 342 111 5 chr6 75583859 75584058 -106831184 + MIR SINE MIR 34 253 -9 192 284 15 30 chr6 75584214 75584281 -106830961 + L2 LINE L2 3149 3214 -58 311 314 0 29 chr6 75585654 75585756 -106829486 + L2 LINE L2 3215 3313 0 22 0 0 0 chr6 75586036 75586058 -106829184 + AT_rich Low_complexity Low_complexity 1 22 0 199 266 113 87 chr6 75586620 75586955 -106828287 - L2 LINE L2 -126 3187 2844 619 172 166 0 chr6 75587786 75587931 -106827311 - MER3 DNA MER1_type -87 122 1 426 184 0 13 chr6 75588238 75588314 -106826928 - MER2 DNA MER2_type -14 331 257 193 237 132 26 chr6 75588436 75588550 -106826692 - L2 LINE L2 -558 2756 2631 434 301 252 13 chr6 75588562 75589064 -106826178 + L2 LINE L2 2430 3061 -211 1775 118 27 97 chr6 75589186 75589515 -106825727 - AluSg SINE Alu -1 309 4 183 378 31 47 chr6 75589762 75590016 -106825226 - L2 LINE L2 -820 2494 2245 1070 154 62 0 chr6 75590025 75590220 -106825022 - MER2 DNA MER2_type -1 344 138 1118 219 9 0 chr6 75590241 75590451 -106824791 + MER8 DNA MER2_type 28 239 0 711 173 39 0 chr6 75590451 75590577 -106824665 - MER2 DNA MER2_type -214 131 1 25 0 0 0 chr6 75591136 75591161 -106824081 + AT_rich Low_complexity Low_complexity 1 25 0 329 276 7 92 chr6 75591452 75591604 -106823638 + MIR SINE MIR 98 236 -26 404 274 46 26 chr6 75592099 75592252 -106822990 + MIR3 SINE MIR 31 186 -22 23 0 0 0 chr6 75592290 75592313 -106822929 + AT_rich Low_complexity Low_complexity 1 23 0 236 303 40 40 chr6 75592548 75592647 -106822595 - L2 LINE L2 0 3313 3215 24 53 0 0 chr6 75592989 75593027 -106822215 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr6 75593070 75593094 -106822148 + AT_rich Low_complexity Low_complexity 1 24 0 1178 202 108 25 chr6 75593290 75593567 -106821675 + AluJo SINE Alu 3 302 0 32 57 0 0 chr6 75594574 75594627 -106820615 + AT_rich Low_complexity Low_complexity 1 53 0 2217 174 26 14 chr6 75595341 75595766 -106819476 - Tigger2a DNA MER2_type 0 434 5 408 221 22 33 chr6 75595835 75596016 -106819226 + (TA)n Simple_repeat Simple_repeat 2 180 0 191 317 92 17 chr6 75596623 75596743 -106818499 - MIR SINE MIR -14 248 120 424 117 27 36 chr6 75597185 75597296 -106817946 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 208 254 0 17 chr6 75597322 75597381 -106817861 + (CATA)n Simple_repeat Simple_repeat 2 59 0 182 247 62 62 chr6 75598118 75598199 -106817043 - L2 LINE L2 -531 2783 2703 189 109 65 0 chr6 75598752 75598798 -106816444 + CT-rich Low_complexity Low_complexity 2 50 0 228 270 0 0 chr6 75599264 75599327 -106815915 + GA-rich Low_complexity Low_complexity 2 64 0 238 239 87 43 chr6 75599770 75599862 -106815380 + MER5B DNA MER1_type 1 96 -82 1027 222 28 9 chr6 75600462 75600678 -106814564 - MER58A DNA MER1_type -3 221 2 450 0 0 0 chr6 75600758 75600808 -106814434 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1852 92 0 38 chr6 75600808 75601063 -106814179 - AluSg SINE Alu -32 278 34 21 57 0 0 chr6 75602013 75602048 -106813194 + AT_rich Low_complexity Low_complexity 1 35 0 269 114 0 45 chr6 75602275 75602319 -106812923 + 5S rRNA rRNA 1 42 -79 259 200 50 10 chr6 75602342 75602442 -106812800 + (TATAG)n Simple_repeat Simple_repeat 2 105 0 198 338 0 0 chr6 75602525 75602593 -106812649 - L2 LINE L2 0 3272 3205 180 0 0 0 chr6 75602738 75602758 -106812484 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 629 308 167 18 chr6 75602779 75603208 -106812034 - L2 LINE L2 -229 3043 2577 204 253 198 37 chr6 75603244 75603406 -106811836 - L2 LINE L2 -905 2409 2222 1172 342 52 31 chr6 75603407 75604083 -106811159 - L2 LINE L2 -1483 1831 1142 493 264 161 0 chr6 75604104 75604259 -106810983 + MER5A DNA MER1_type 10 189 0 421 240 25 4 chr6 75604388 75604509 -106810733 + MLT1I LTR MaLR 42 143 -266 336 318 71 13 chr6 75604545 75604699 -106810543 + MLT1I LTR MaLR 244 406 -3 439 318 40 16 chr6 75606519 75606771 -106808471 + MIR SINE MIR 5 262 0 295 249 91 88 chr6 75607968 75608354 -106806888 + L1MEd LINE L1 640 1026 -5093 268 306 19 28 chr6 75608522 75608630 -106806612 - MIR SINE MIR -109 153 47 210 339 0 0 chr6 75609917 75609979 -106805263 - L2 LINE L2 -381 2933 2872 350 306 172 85 chr6 75610165 75610626 -106804616 - L2 LINE L2 0 3313 2802 248 299 41 82 chr6 75610748 75610895 -106804347 - MIR SINE MIR -119 143 3 21 82 0 0 chr6 75611803 75611852 -106803390 + AT_rich Low_complexity Low_complexity 1 49 0 342 0 0 0 chr6 75613776 75613814 -106801428 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 261 362 49 42 chr6 75615116 75615566 -106799676 + L2 LINE L2 2511 2963 -351 204 222 22 0 chr6 75615771 75615816 -106799426 + L2 LINE L2 3226 3271 -1 1654 149 10 45 chr6 75616275 75616600 -106798642 + AluSx SINE Alu 3 317 0 22 35 0 0 chr6 75616800 75616829 -106798413 + AT_rich Low_complexity Low_complexity 1 29 0 2406 66 0 0 chr6 75618174 75618476 -106796766 - AluY SINE Alu -9 302 1 243 260 52 52 chr6 75618707 75618784 -106796458 + L2 LINE L2 3237 3313 0 216 301 58 48 chr6 75619003 75619106 -106796136 + MIR SINE MIR 37 140 -122 2866 256 6 5 chr6 75619136 75619778 -106795464 + MER82 DNA MER2_type 11 653 0 334 260 153 27 chr6 75620732 75620882 -106794360 + MER112 DNA MER1_type 1 169 -91 2195 116 7 0 chr6 75621128 75621429 -106793813 - AluSc SINE Alu -6 303 1 745 277 106 3 chr6 75621840 75622089 -106793153 + MIR SINE MIR 3 262 0 22 0 0 0 chr6 75622241 75622263 -106792979 + AT_rich Low_complexity Low_complexity 1 22 0 1898 144 5 76 chr6 75623069 75623326 -106791916 - MLT1B LTR MaLR 0 390 169 1960 60 0 0 chr6 75623326 75623578 -106791664 - L1PA5 LINE L1 0 6154 5903 1898 144 5 76 chr6 75623578 75623716 -106791526 - MLT1B LTR MaLR -221 169 23 400 57 171 43 chr6 75625257 75625327 -106789915 - MADE1 DNA Mariner 0 80 2 1975 125 0 7 chr6 75625414 75625693 -106789549 - AluSx SINE Alu -8 304 28 205 172 0 52 chr6 75625717 75625775 -106789467 + CT-rich Low_complexity Low_complexity 3 57 0 518 335 99 29 chr6 75625815 75626569 -106788673 + L2 LINE L2 2187 3067 -246 252 0 0 0 chr6 75626579 75626607 -106788635 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 315 0 0 0 chr6 75626606 75626641 -106788601 + (CA)n Simple_repeat Simple_repeat 1 35 0 921 194 66 122 chr6 75626692 75627079 -106788163 - MLT1A2 LTR MaLR 0 374 8 476 312 5 43 chr6 75627086 75627272 -106787970 + L2 LINE L2 3135 3313 0 279 367 54 42 chr6 75628242 75628482 -106786760 - L2 LINE L2 -225 3047 2805 21 57 0 0 chr6 75628823 75628858 -106786384 + AT_rich Low_complexity Low_complexity 1 35 0 385 325 127 6 chr6 75629414 75629580 -106785662 - MIR SINE MIR -12 250 65 234 116 0 0 chr6 75629686 75629729 -106785513 + (A)n Simple_repeat Simple_repeat 1 43 0 297 0 0 0 chr6 75630026 75630048 -106785194 + (TG)n Simple_repeat Simple_repeat 1 55 0 297 0 0 0 chr6 75630048 75630081 -106785161 + (TG)n Simple_repeat Simple_repeat 2 34 0 2581 114 0 10 chr6 75630168 75630564 -106784678 + L1PA16 LINE L1 5773 6164 -2 321 280 40 0 chr6 75630629 75630704 -106784538 - L2 LINE L2 -20 3252 3175 251 27 0 27 chr6 75631108 75631145 -106784097 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 305 254 42 0 chr6 75631279 75631350 -106783892 - tRNA-Ile-ATT tRNA tRNA -3 74 1 785 243 47 19 chr6 75634908 75635122 -106780120 + MER58A DNA MER1_type 1 220 -4 2043 165 58 54 chr6 75635155 75635810 -106779432 - MER67C LTR ERV1 -2 708 10 291 214 0 0 chr6 75636551 75636621 -106778621 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 218 305 160 38 chr6 75636623 75636754 -106778488 + MIR SINE MIR 64 210 -52 226 295 0 19 chr6 75637584 75637689 -106777553 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 21 0 0 0 chr6 75641127 75641148 -106774094 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr6 75641269 75641312 -106773930 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 75641855 75641877 -106773365 + AT_rich Low_complexity Low_complexity 1 22 0 192 329 38 62 chr6 75642612 75642822 -106772420 - L2 LINE L2 -640 2674 2470 215 366 106 0 chr6 75642860 75643002 -106772240 - L2 LINE L2 -962 2352 2196 2417 43 0 0 chr6 75643725 75644045 -106771197 + AluY SINE Alu 3 322 0 771 338 66 32 chr6 75644964 75645431 -106769811 - L2 LINE L2 -14 3299 2817 4968 132 75 8 chr6 75645493 75645821 -106769421 - Tigger3b DNA MER2_type -1806 1222 918 188 35 35 0 chr6 75645821 75645850 -106769392 + (TGAG)n Simple_repeat Simple_repeat 1 30 0 4968 132 75 8 chr6 75645850 75646410 -106768832 - Tigger3b DNA MER2_type -2110 918 274 543 194 31 0 chr6 75646408 75646506 -106768736 - Tigger3b DNA MER2_type -1129 102 2 * 534 308 68 28 chr6 75646506 75646756 -106768486 - L2 LINE L2 -594 2720 2461 230 279 38 0 chr6 75646895 75646974 -106768268 - L3b LINE CR1 -204 1379 1298 6783 50 0 36 chr6 75648748 75648888 -106766354 + L1PA7 LINE L1 5270 5414 -740 252 0 0 0 chr6 75648888 75648916 -106766326 + (CA)n Simple_repeat Simple_repeat 1 28 0 6783 50 0 36 chr6 75648916 75649692 -106765550 + L1PA7 LINE L1 5414 6153 -1 237 80 40 20 chr6 75649732 75649782 -106765460 + CT-rich Low_complexity Low_complexity 5 55 0 1034 99 11 22 chr6 75649855 75650037 -106765205 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2355 74 0 3 chr6 75650070 75650368 -106764874 + AluY SINE Alu 1 297 -14 1703 159 11 0 chr6 75650431 75650877 -106764365 - AluJb SINE Alu 0 458 10 180 318 91 0 chr6 75651760 75651826 -106763416 + MIR SINE MIR 31 102 -160 26 0 0 0 chr6 75652014 75652040 -106763202 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 75653349 75653371 -106761871 + AT_rich Low_complexity Low_complexity 1 22 0 347 188 43 7 chr6 75653462 75653600 -106761642 + (TA)n Simple_repeat Simple_repeat 2 144 0 294 115 0 0 chr6 75653603 75653655 -106761587 + (GA)n Simple_repeat Simple_repeat 1 52 0 184 180 98 16 chr6 75654103 75654164 -106761078 + MIR SINE MIR 132 197 -65 827 315 77 39 chr6 75654564 75655021 -106760221 - L2 LINE L2 -586 2728 2255 211 230 115 35 chr6 75655252 75655339 -106759903 - MIR SINE MIR -122 140 47 190 314 20 0 chr6 75655467 75655518 -106759724 - L2 LINE L2 -84 3188 3137 835 354 54 9 chr6 75655753 75656213 -106759029 - L2 LINE L2 -479 2835 2355 591 271 7 14 chr6 75656289 75656433 -106758809 + MER58B DNA MER1_type 199 341 0 255 114 0 0 chr6 75656601 75656645 -106758597 + (TC)n Simple_repeat Simple_repeat 1 44 0 531 302 130 38 chr6 75656733 75657048 -106758194 + L2 LINE L2 2970 3313 0 237 33 0 0 chr6 75657279 75657309 -106757933 + (CA)n Simple_repeat Simple_repeat 2 31 0 2752 189 25 10 chr6 75657791 75658300 -106756942 + Tigger7 DNA MER2_type 1 517 -1970 513 214 0 19 chr6 75658286 75658389 -106756853 + Tigger7 DNA MER2_type 2387 2487 0 * 898 190 0 31 chr6 75658404 75658525 -106756717 - MER58B DNA MER1_type -2084 336 213 2221 171 11 35 chr6 75658525 75658692 -106756550 - MER65A LTR ERV1 0 445 275 2448 75 3 0 chr6 75658692 75658997 -106756245 - AluY SINE Alu -5 306 1 2221 171 11 35 chr6 75658997 75659246 -106755996 - MER65A LTR ERV1 -170 275 38 872 65 16 0 chr6 75659246 75659369 -106755873 + (TTTC)n Simple_repeat Simple_repeat 1 125 0 2221 171 11 35 chr6 75659369 75659407 -106755835 - MER65A LTR ERV1 -407 38 1 898 190 0 31 chr6 75659407 75659448 -106755794 - MER58B DNA MER1_type -2207 213 179 309 26 0 0 chr6 75659645 75659683 -106755559 + (A)n Simple_repeat Simple_repeat 1 38 0 1235 183 97 8 chr6 75660593 75660861 -106754381 - AluJb SINE Alu -20 292 1 2050 164 13 21 chr6 75660885 75661263 -106753979 + THE1C LTR MaLR 1 375 0 242 250 18 0 chr6 75661299 75661355 -106753887 + L2 LINE L2 3252 3308 -5 865 114 36 6 chr6 75662168 75662335 -106752907 + GA-rich Low_complexity Low_complexity 3 174 0 491 245 54 20 chr6 75662641 75662788 -106752454 - MIR SINE MIR -32 230 79 286 262 36 0 chr6 75662790 75662874 -106752368 + MER94 DNA DNA 1 87 -47 1311 78 0 0 chr6 75662877 75663057 -106752185 + AluY SINE Alu 131 310 -1 900 145 6 6 chr6 75664476 75664648 -106750594 + L1MA8 LINE L1 6120 6291 0 2318 75 0 7 chr6 75665852 75666147 -106749095 - AluY SINE Alu -18 293 1 42 48 0 0 chr6 75666353 75666416 -106748826 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr6 75666493 75666514 -106748728 + AT_rich Low_complexity Low_complexity 1 21 0 705 93 47 0 chr6 75667736 75667843 -106747399 + L1PA13 LINE L1 6050 6161 -2 2154 75 21 0 chr6 75670887 75671168 -106744074 - AluY SINE Alu -16 295 9 1930 135 10 3 chr6 75671892 75672181 -106743061 + AluSx SINE Alu 1 291 -21 379 374 12 5 chr6 75672184 75672371 -106742871 - MIR3 SINE MIR -5 203 11 493 222 56 35 chr6 75672704 75672848 -106742394 + L1ME LINE L1 5518 5664 -457 11232 218 39 22 chr6 75674129 75674770 -106740472 - L1MB2 LINE L1 -2 6169 5540 364 75 0 30 chr6 75674770 75674837 -106740405 + (TTTTG)n Simple_repeat Simple_repeat 5 69 0 1815 146 4 4 chr6 75674843 75675118 -106740124 - AluSx SINE Alu -37 275 1 11232 218 39 22 chr6 75675118 75676500 -106738742 - L1MB2 LINE L1 -635 5536 4179 212 0 36 0 chr6 75676500 75676528 -106738714 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 11232 218 39 22 chr6 75676528 75678375 -106736867 - L1MB2 LINE L1 -1992 4179 2218 594 109 0 0 chr6 75679171 75679263 -106735979 + (TC)n Simple_repeat Simple_repeat 1 92 0 30 0 0 0 chr6 75679556 75679586 -106735656 + AT_rich Low_complexity Low_complexity 1 30 0 1512 256 74 39 chr6 75680426 75681023 -106734219 + L1ME1 LINE L1 5549 6166 0 209 303 13 26 chr6 75682364 75682440 -106732802 - L2 LINE L2 -10 3262 3188 305 256 11 11 chr6 75682445 75682535 -106732707 + L1ME1 LINE L1 6057 6146 -20 275 310 47 47 chr6 75683014 75683143 -106732099 - MIR SINE MIR -123 139 11 315 0 0 0 chr6 75684804 75684839 -106730403 + (CA)n Simple_repeat Simple_repeat 2 36 0 1265 166 146 32 chr6 75684853 75685161 -106730081 - MER2 DNA MER2_type 0 344 2 204 226 0 0 chr6 75685201 75685263 -106729979 + (TA)n Simple_repeat Simple_repeat 2 63 0 775 243 47 9 chr6 75686970 75687184 -106728058 - MER58A DNA MER1_type -2 222 1 462 204 39 19 chr6 75687184 75687287 -106727955 + MLT1D LTR MaLR 1 105 -400 1610 129 0 82 chr6 75688507 75688801 -106726441 + AluSg SINE Alu 41 310 0 582 178 0 0 chr6 75689370 75689488 -106725754 - L1MA7 LINE L1 -3 6288 6171 609 114 49 32 chr6 75689488 75689611 -106725631 + L1MA7 LINE L1 6029 6153 -138 260 260 141 102 chr6 75689638 75689815 -106725427 - MER5A DNA MER1_type 0 189 6 333 371 164 0 chr6 75689944 75690176 -106725066 + L2 LINE L2 2996 3265 -7 1485 188 32 24 chr6 75692420 75692760 -106722482 - MER61A LTR ERV1 0 343 1 186 392 0 14 chr6 75693316 75693390 -106721852 + L3 LINE CR1 206 278 -1299 2402 59 0 16 chr6 75693577 75693884 -106721358 - AluY SINE Alu -9 302 1 398 242 25 96 chr6 75693885 75694042 -106721200 + L3 LINE CR1 612 757 -820 338 306 10 0 chr6 75694095 75694193 -106721049 + L3 LINE CR1 961 1059 -518 22 35 0 0 chr6 75696063 75696092 -106719150 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 75696476 75696500 -106718742 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr6 75697254 75697288 -106717954 + AT_rich Low_complexity Low_complexity 1 34 0 319 338 95 17 chr6 75697490 75697721 -106717521 - L1ME3 LINE L1 -233 5929 5681 387 352 124 0 chr6 75697725 75697958 -106717284 + L2 LINE L2 3041 3302 -11 2222 90 3 0 chr6 75698372 75698671 -106716571 + L1P LINE L1 3896 4195 -1951 26 50 0 0 chr6 75700693 75700733 -106714509 + AT_rich Low_complexity Low_complexity 1 40 0 911 250 18 9 chr6 75701024 75701244 -106713998 + MER58A DNA MER1_type 3 224 0 901 296 85 43 chr6 75701369 75702066 -106713176 - L1MEd LINE L1 -4897 1222 497 319 295 46 69 chr6 75702426 75702643 -106712599 - L2 LINE L2 -1 3312 3101 2264 116 0 0 chr6 75702811 75703112 -106712130 - AluSx SINE Alu -9 303 3 24 0 0 0 chr6 75703595 75703619 -106711623 + AT_rich Low_complexity Low_complexity 1 24 0 220 291 70 70 chr6 75703776 75703934 -106711308 + MIR SINE MIR 95 252 -10 22 56 0 0 chr6 75704396 75704432 -106710810 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr6 75704850 75704880 -106710362 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr6 75705111 75705135 -106710107 + AT_rich Low_complexity Low_complexity 1 24 0 813 182 27 5 chr6 75705737 75705924 -106709318 - LTR56 LTR ERV1 -167 278 88 1498 195 124 0 chr6 75706401 75706724 -106708518 + MLT1A1 LTR MaLR 1 363 -2 187 338 15 29 chr6 75707157 75707225 -106708017 + L2 LINE L2 3246 3312 -1 2180 105 0 3 chr6 75707402 75707713 -106707529 - AluSx SINE Alu 0 310 1 181 275 43 14 chr6 75708206 75708275 -106706967 - L2 LINE L2 -779 2535 2465 769 159 6 70 chr6 75708816 75708973 -106706269 - MER20 DNA MER1_type -72 147 1 204 241 155 0 chr6 75708979 75709037 -106706205 + MER5A DNA MER1_type 50 116 -73 187 246 49 82 chr6 75709077 75709138 -106706104 + MER5A DNA MER1_type 130 188 -1 272 238 0 0 chr6 75709527 75709590 -106705652 + (TTCA)n Simple_repeat Simple_repeat 4 66 0 184 258 227 15 chr6 75709592 75709658 -106705584 - L2 LINE L2 -4 3268 3189 5685 101 11 1 chr6 75710025 75710840 -106704402 + L1PA13 LINE L1 5335 6157 -6 23 54 0 0 chr6 75710924 75710961 -106704281 + AT_rich Low_complexity Low_complexity 1 37 0 267 326 76 81 chr6 75711613 75712033 -106703209 - L2 LINE L2 -36 3236 2819 274 319 98 49 chr6 75712869 75713258 -106701984 - L2 LINE L2 -472 2842 2435 28 0 0 0 chr6 75713760 75713788 -106701454 + AT_rich Low_complexity Low_complexity 1 28 0 219 186 0 0 chr6 75714826 75714869 -106700373 + (CA)n Simple_repeat Simple_repeat 2 44 0 273 221 0 0 chr6 75716694 75716762 -106698480 + (TATG)n Simple_repeat Simple_repeat 1 68 0 21 36 0 0 chr6 75716825 75716853 -106698389 + AT_rich Low_complexity Low_complexity 1 28 0 405 194 0 65 chr6 75717184 75717277 -106697965 - AluJ/FLAM SINE Alu -225 87 1 1102 152 244 57 chr6 75717447 75717763 -106697479 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr6 75717861 75717890 -106697352 + AT_rich Low_complexity Low_complexity 1 29 0 1076 213 14 5 chr6 75718084 75718300 -106696942 + MER20 DNA MER1_type 1 218 -1 22 0 0 0 chr6 75719265 75719287 -106695955 + AT_rich Low_complexity Low_complexity 1 22 0 970 134 6 11 chr6 75719850 75720029 -106695213 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 200 119 0 24 chr6 75720096 75720138 -106695104 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 993 153 0 0 chr6 75720139 75720315 -106694927 + GA-rich Low_complexity Low_complexity 3 178 0 252 0 0 0 chr6 75720745 75720773 -106694469 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr6 75720918 75720947 -106694295 + AT_rich Low_complexity Low_complexity 1 29 0 567 232 151 5 chr6 75720961 75721007 -106694235 - MIR SINE MIR -10 252 214 198 71 0 0 chr6 75721007 75721035 -106694207 + (TG)n Simple_repeat Simple_repeat 1 28 0 567 232 151 5 chr6 75721035 75721173 -106694069 - MIR SINE MIR -48 214 41 2333 45 42 3 chr6 75721219 75721507 -106693735 + AluY SINE Alu 1 299 -12 43 35 0 0 chr6 75723060 75723117 -106692125 + AT_rich Low_complexity Low_complexity 1 57 0 3892 24 0 0 chr6 75723348 75723802 -106691440 - L1PA2 LINE L1 -1 6154 5701 27 29 0 0 chr6 75724094 75724128 -106691114 + AT_rich Low_complexity Low_complexity 1 34 0 565 258 39 7 chr6 75724968 75725123 -106690119 - MIR SINE MIR -72 190 31 1908 105 6 96 chr6 75725172 75725505 -106689737 + AluSx SINE Alu 9 311 -1 180 68 45 23 chr6 75725539 75725583 -106689659 + (TTATG)n Simple_repeat Simple_repeat 3 47 0 332 257 14 0 chr6 75726698 75726772 -106688470 - L2 LINE L2 -2 3311 3237 2853 123 20 9 chr6 75726916 75727372 -106687870 + L1PA16 LINE L1 5706 6166 0 198 71 0 0 chr6 75727857 75727885 -106687357 + (TG)n Simple_repeat Simple_repeat 1 28 0 201 368 52 65 chr6 75727959 75728114 -106687128 - L2 LINE L2 -203 3069 2917 369 346 0 0 chr6 75728322 75728429 -106686813 - L2 LINE L2 -519 2795 2689 534 305 75 0 chr6 75728823 75729010 -106686232 - MIR SINE MIR -55 207 7 2131 109 0 0 chr6 75729258 75729541 -106685701 - AluSg SINE Alu -11 299 17 486 340 50 38 chr6 75731515 75731753 -106683489 - MLT1J LTR MaLR -169 342 102 382 190 0 0 chr6 75731912 75731970 -106683272 - MER2 DNA MER2_type -5 340 283 1267 135 14 42 chr6 75732006 75732075 -106683167 - MER2 DNA MER2_type -135 210 141 2090 133 0 0 chr6 75732075 75732369 -106682873 - AluSx SINE Alu -18 294 1 1267 135 14 42 chr6 75732369 75732514 -106682728 - MER2 DNA MER2_type -204 141 2 492 184 11 38 chr6 75732534 75732719 -106682523 + (TA)n Simple_repeat Simple_repeat 1 180 0 379 280 136 0 chr6 75733414 75733546 -106681696 - MIR SINE MIR -6 256 107 3636 84 11 4 chr6 75733616 75734137 -106681105 - L1PA7 LINE L1 -789 5357 4833 * 6331 54 0 4 chr6 75734115 75734916 -106680326 + L1PA7 LINE L1 5353 6150 -4 377 260 107 67 chr6 75734992 75735142 -106680100 + LTR16B LTR ERVL 1 156 -308 180 0 0 0 chr6 75735151 75735171 -106680071 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 2150 193 77 0 chr6 75735214 75735645 -106679597 - MLT2C2 LTR ERVL 0 464 1 292 281 73 0 chr6 75737444 75737526 -106677716 + MIR3 SINE MIR 114 201 -7 23 68 0 0 chr6 75738143 75738187 -106677055 + AT_rich Low_complexity Low_complexity 1 44 0 1565 300 91 26 chr6 75738597 75739494 -106675748 - L2 LINE L2 0 3313 2355 1014 207 5 0 chr6 75739538 75739726 -106675516 + MER5A DNA MER1_type 1 189 0 214 364 84 13 chr6 75739805 75739959 -106675283 + MIR SINE MIR 90 254 -8 8421 103 11 92 chr6 75740313 75741821 -106673421 - SVA Other Other 0 1386 1 207 0 0 0 chr6 75742139 75742162 -106673080 + (CATA)n Simple_repeat Simple_repeat 4 26 0 346 254 15 52 chr6 75742162 75742296 -106672946 + MIR SINE MIR 76 204 -58 288 53 0 0 chr6 75742305 75742343 -106672899 + (TG)n Simple_repeat Simple_repeat 2 39 0 921 322 118 7 chr6 75742722 75743283 -106671959 - L2 LINE L2 -3 3310 2690 22 0 0 0 chr6 75743664 75743686 -106671556 + AT_rich Low_complexity Low_complexity 1 22 0 510 289 0 13 chr6 75743712 75743864 -106671378 + MIR SINE MIR 40 189 -73 226 239 99 0 chr6 75743894 75743965 -106671277 - L1MDb LINE L1 -5124 1285 1208 439 278 46 82 chr6 75743979 75744260 -106670982 - HAL1 LINE L1 -1423 1084 814 1717 167 50 33 chr6 75744654 75745013 -106670229 + MLT1A1 LTR MaLR 1 365 0 2849 177 50 17 chr6 75745477 75745522 -106669720 - MLT2B3 LTR ERVL 0 554 512 474 108 0 0 chr6 75745522 75745605 -106669637 + (CATA)n Simple_repeat Simple_repeat 2 84 0 2849 177 50 17 chr6 75745605 75746095 -106669147 - MLT2B3 LTR ERVL -42 512 1 205 337 43 43 chr6 75746797 75746889 -106668353 + MIR SINE MIR 55 146 -62 276 291 35 64 chr6 75748401 75748542 -106666700 - MIR SINE MIR -60 202 66 1832 209 22 6 chr6 75749303 75749662 -106665580 - MLT1A1 LTR MaLR 0 365 1 7061 103 2 0 chr6 75750943 75752729 -106662513 - L1PA7 LINE L1 -3 6151 4360 1789 112 0 0 chr6 75752729 75752989 -106662253 + L1P LINE L1 3439 3698 -2448 2823 121 9 2 chr6 75753006 75753443 -106661799 - L1PB1 LINE L1 -2 6149 5710 192 368 23 0 chr6 75753557 75753644 -106661598 + L2 LINE L2 2963 3051 -221 248 167 0 19 chr6 75754029 75754083 -106661159 + (TATG)n Simple_repeat Simple_repeat 2 54 0 329 303 18 0 chr6 75755387 75755496 -106659746 + (TATG)n Simple_repeat Simple_repeat 3 113 0 249 108 0 0 chr6 75756350 75756387 -106658855 + (T)n Simple_repeat Simple_repeat 1 37 0 188 373 0 0 chr6 75756406 75756473 -106658769 + L3 LINE CR1 1508 1574 -3 758 265 55 82 chr6 75756802 75756829 -106658413 - MLT1J1 LTR MaLR -20 426 400 2132 131 0 0 chr6 75756829 75757126 -106658116 + AluSg SINE Alu 3 299 -11 758 265 55 82 chr6 75757126 75757536 -106657706 - MLT1J1 LTR MaLR -46 400 1 361 292 154 15 chr6 75758913 75759108 -106656134 - MIR SINE MIR -27 235 14 2683 130 14 34 chr6 75759614 75760115 -106655127 + L1MA3 LINE L1 5815 6305 0 813 275 64 104 chr6 75760187 75760452 -106654790 - L2 LINE L2 0 3313 3039 2336 50 0 0 chr6 75760452 75760733 -106654509 - AluY SINE Alu -30 281 1 813 275 64 104 chr6 75760733 75761027 -106654215 - L2 LINE L2 -274 3039 2760 332 305 62 23 chr6 75761114 75761242 -106654000 - MIR3 SINE MIR -36 172 40 8817 168 20 21 chr6 75762188 75764187 -106651055 - L1M1 LINE L1 -624 7100 5103 459 52 0 0 chr6 75764187 75764245 -106650997 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 8817 168 20 21 chr6 75764245 75764359 -106650883 - L1M1 LINE L1 -2621 5103 4990 7781 199 27 27 chr6 75764359 75766038 -106649204 - MER52A LTR ERV1 0 1755 1 21615 163 26 13 chr6 75766042 75769243 -106645999 - L1M1 LINE L1 -2579 4986 1700 441 0 0 0 chr6 75769243 75769292 -106645950 + (TG)n Simple_repeat Simple_repeat 2 50 0 21615 163 26 13 chr6 75769292 75770997 -106644245 - L1M1 LINE L1 -5865 1700 19 2608 100 16 3 chr6 75771093 75771463 -106643779 + THE1C LTR MaLR 1 375 0 2288 77 0 0 chr6 75773049 75773335 -106641907 + AluY SINE Alu 22 307 -4 234 192 0 0 chr6 75774128 75774180 -106641062 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 23 78 0 0 chr6 75775275 75775326 -106639916 + AT_rich Low_complexity Low_complexity 1 51 0 26 0 0 0 chr6 75775359 75775385 -106639857 + AT_rich Low_complexity Low_complexity 1 26 0 407 326 72 39 chr6 75775550 75776045 -106639197 - L2 LINE L2 -169 3144 2631 271 348 76 0 chr6 75776112 75776204 -106639038 - MIR3 SINE MIR -10 198 100 672 299 32 31 chr6 75776323 75776551 -106638691 + MIR SINE MIR 1 228 -34 296 87 0 0 chr6 75776962 75777008 -106638234 - MADE1 DNA Mariner 0 80 35 255 254 60 45 chr6 75777193 75777327 -106637915 + MLT1L LTR MaLR 470 605 -10 30 83 0 0 chr6 75777880 75777952 -106637290 + AT_rich Low_complexity Low_complexity 1 72 0 2301 273 75 41 chr6 75778988 75780104 -106635138 + L2 LINE L2 2160 3313 0 531 293 39 39 chr6 75780281 75780486 -106634756 + MIR SINE MIR 30 234 -28 38 39 0 0 chr6 75780506 75780558 -106634684 + AT_rich Low_complexity Low_complexity 1 52 0 636 198 135 0 chr6 75780752 75780878 -106634364 - MER5A DNA MER1_type 0 189 47 1287 251 104 74 chr6 75780878 75781409 -106633833 - MLT1E LTR MaLR 0 567 22 184 298 0 0 chr6 75781409 75781456 -106633786 - MER5A DNA MER1_type -140 49 3 21 89 0 0 chr6 75781559 75781615 -106633627 + AT_rich Low_complexity Low_complexity 1 56 0 413 336 58 34 chr6 75783413 75783621 -106631621 + L2 LINE L2 3055 3267 -5 201 289 185 22 chr6 75783994 75784129 -106631113 - L2 LINE L2 0 3272 3116 237 357 0 0 chr6 75784188 75784258 -106630984 + L2 LINE L2 3244 3313 0 590 266 25 6 chr6 75785063 75785221 -106630021 - MIR SINE MIR 0 262 102 205 311 76 8 chr6 75785337 75785456 -106629786 - MIR SINE MIR -12 250 124 322 254 55 18 chr6 75785955 75786065 -106629177 - L2 LINE L2 -9 3304 3191 251 325 56 40 chr6 75786578 75786704 -106628538 - L2 LINE L2 -496 2818 2691 211 111 56 37 chr6 75787957 75788011 -106627231 + (TTTAA)n Simple_repeat Simple_repeat 4 58 0 303 147 51 70 chr6 75788782 75788938 -106626304 + (TTAAA)n Simple_repeat Simple_repeat 2 154 0 1369 157 17 94 chr6 75790236 75790586 -106624656 - MER33 DNA MER1_type -1 323 1 186 209 23 0 chr6 75790872 75790915 -106624327 - L3 LINE CR1 -1020 557 514 604 257 71 46 chr6 75791135 75791527 -106623715 + MLT1J LTR MaLR 1 461 -50 318 322 91 76 chr6 75791587 75791682 -106623560 - L2 LINE L2 -61 3252 3160 2637 48 0 3 chr6 75791682 75791993 -106623249 + AluY SINE Alu 1 310 -1 318 322 91 76 chr6 75791993 75792348 -106622894 - L2 LINE L2 -153 3160 2783 2360 103 0 0 chr6 75792348 75792658 -106622584 - AluSx SINE Alu -2 310 1 318 322 91 76 chr6 75792658 75792889 -106622353 - L2 LINE L2 -530 2783 2557 21 36 0 0 chr6 75793395 75793423 -106621819 + AT_rich Low_complexity Low_complexity 1 28 0 16747 187 21 28 chr6 75793423 75796671 -106618571 - L1PA16 LINE L1 -9 6860 3591 2161 102 34 0 chr6 75796671 75796966 -106618276 - AluY SINE Alu -6 305 1 16747 187 21 28 chr6 75796966 75800619 -106614623 - L1PA16 LINE L1 -3278 3591 1 21 36 0 0 chr6 75800669 75800697 -106614545 + AT_rich Low_complexity Low_complexity 1 28 0 561 83 0 0 chr6 75801614 75801747 -106613495 + L1PB1 LINE L1 6068 6200 0 973 217 24 24 chr6 75802035 75802242 -106613000 + MER63A DNA MER1_type 4 210 0 180 0 0 0 chr6 75805500 75805520 -106609722 + (A)n Simple_repeat Simple_repeat 1 20 0 203 194 0 0 chr6 75805864 75805900 -106609342 + A-rich Low_complexity Low_complexity 1 36 0 209 184 0 0 chr6 75806106 75806144 -106609098 + (TG)n Simple_repeat Simple_repeat 1 38 0 204 67 0 0 chr6 75806248 75806278 -106608964 + (T)n Simple_repeat Simple_repeat 1 30 0 2247 102 0 3 chr6 75807627 75807930 -106607312 - AluSq SINE Alu -11 302 1 22 0 0 0 chr6 75808262 75808284 -106606958 + AT_rich Low_complexity Low_complexity 1 22 0 5909 157 49 30 chr6 75809166 75810371 -106604871 + Tigger3b DNA MER2_type 4 1231 0 473 247 26 84 chr6 75810983 75811173 -106604069 - L2 LINE L2 -1 3312 3134 2256 138 61 32 chr6 75811362 75811879 -106603363 - MLT2A2 LTR ERVL 0 554 1 392 291 27 0 chr6 75812074 75812184 -106603058 - L2 LINE L2 -1 3312 3200 328 269 102 66 chr6 75812932 75813099 -106602143 + MIR SINE MIR 7 143 -65 36 40 0 0 chr6 75813446 75813496 -106601746 + AT_rich Low_complexity Low_complexity 1 50 0 681 249 138 0 chr6 75814048 75814273 -106600969 + MIR SINE MIR 5 260 -2 1468 197 27 3 chr6 75814571 75814866 -106600376 + AluJo SINE Alu 3 304 -8 1464 201 14 83 chr6 75815653 75816072 -106599170 - MLT1B LTR MaLR 0 390 1 288 295 205 6 chr6 75816187 75816343 -106598899 + MIR SINE MIR 2 188 -74 536 292 39 7 chr6 75817444 75817598 -106597644 + L2 LINE L2 3131 3289 -24 817 316 121 12 chr6 75817602 75818096 -106597146 - L2 LINE L2 -27 3286 2743 483 286 176 5 chr6 75818615 75818814 -106596428 + MIR SINE MIR 16 248 -14 327 302 30 41 chr6 75819058 75819227 -106596015 + MIR SINE MIR 51 217 -45 190 296 52 52 chr6 75819700 75819815 -106595427 - L2 LINE L2 -1069 2245 2131 22 0 0 0 chr6 75820279 75820301 -106594941 + AT_rich Low_complexity Low_complexity 1 22 0 207 114 0 0 chr6 75821777 75821812 -106593430 + (GA)n Simple_repeat Simple_repeat 1 35 0 244 261 0 15 chr6 75823815 75823880 -106591362 + tRNA-Ser-TCA tRNA tRNA 8 71 -14 1185 233 47 33 chr6 75824802 75825102 -106590140 - MSTD LTR MaLR -2 394 91 825 212 0 24 chr6 75825107 75825272 -106589970 - FRAM SINE Alu -5 161 1 3193 82 2 41 chr6 75825291 75825368 -106589874 - MLT2A1 LTR ERVL 0 444 366 297 0 0 0 chr6 75825368 75825401 -106589841 + (TA)n Simple_repeat Simple_repeat 1 33 0 3193 82 2 41 chr6 75825401 75825785 -106589457 - MLT2A1 LTR ERVL -78 366 1 4589 69 29 3 chr6 75825785 75826639 -106588603 - HERVL-A1 LTR ERVL 0 5654 4740 1984 81 0 4 chr6 75826618 75826878 -106588364 - HERVL-A1 LTR ERVL -2567 3087 2829 * 17271 74 13 1 chr6 75826877 75829085 -106586157 - HERVL-A1 LTR ERVL -916 4738 2506 2182 65 0 14 chr6 75829085 75829376 -106585866 - HERVL-A1 LTR ERVL -5367 287 1 390 75 0 0 chr6 75829376 75829429 -106585813 - MLT2A1 LTR ERVL 0 453 401 2995 97 5 2 chr6 75829478 75829881 -106585361 - MLT2A1 LTR ERVL -40 404 1 565 209 96 0 chr6 75829890 75830005 -106585237 - FLAM_C SINE Alu -17 126 1 566 174 41 0 chr6 75830006 75830104 -106585138 - MSTD LTR MaLR -326 102 1 2315 62 0 23 chr6 75830156 75830461 -106584781 + AluY SINE Alu 1 298 -13 454 366 64 8 chr6 75830461 75830712 -106584530 + MLT1J LTR MaLR 168 432 -79 247 271 163 39 chr6 75830941 75831070 -106584172 + L2 LINE L2 3132 3276 -37 183 266 158 19 chr6 75831227 75831385 -106583857 - MER5C DNA MER1_type -64 260 81 208 159 0 23 chr6 75833087 75833131 -106582111 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 603 64 0 0 chr6 75834054 75834132 -106581110 - MADE1 DNA Mariner -2 78 1 1183 219 217 22 chr6 75834165 75834685 -106580557 + L1MC4a LINE L1 7281 7807 -1 270 0 0 0 chr6 75834776 75834806 -106580436 + (TG)n Simple_repeat Simple_repeat 2 31 0 247 235 0 41 chr6 75838759 75838857 -106576385 + L1MC4 LINE L1 6610 6703 -1339 213 343 118 0 chr6 75840322 75840424 -106574818 + L2 LINE L2 3132 3245 -27 1691 194 7 7 chr6 75842975 75843279 -106571963 - AluJb SINE Alu -8 304 1 283 228 81 16 chr6 75843305 75843428 -106571814 - L1ME4a LINE L1 0 6121 5991 277 288 121 0 chr6 75844804 75844936 -106570306 + MIR SINE MIR 16 163 -99 183 364 124 8 chr6 75845061 75845190 -106570052 + MIR SINE MIR 116 259 -3 182 217 22 22 chr6 75845583 75845629 -106569613 + L2 LINE L2 3255 3300 -13 186 43 0 0 chr6 75845629 75845652 -106569590 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 682 268 38 14 chr6 75845695 75845908 -106569334 - L2 LINE L2 -4 3309 3092 667 273 86 25 chr6 75845929 75846386 -106568856 - MLT1H LTR MaLR 0 549 1 762 277 121 68 chr6 75846403 75846880 -106568362 - L2 LINE L2 -253 3060 2567 2271 100 0 3 chr6 75847298 75847598 -106567644 + AluSx SINE Alu 1 299 -13 268 326 53 0 chr6 75848156 75848251 -106566991 + MIR3 SINE MIR 61 160 -48 324 270 56 22 chr6 75848251 75848340 -106566902 - MER5B DNA MER1_type 0 178 87 242 236 55 0 chr6 75848388 75848443 -106566799 + MIR3 SINE MIR 151 208 0 25 0 0 0 chr6 75853191 75853216 -106562026 + AT_rich Low_complexity Low_complexity 1 25 0 26 104 0 0 chr6 75855228 75855324 -106559918 + AT_rich Low_complexity Low_complexity 1 96 0 203 162 0 0 chr6 75857411 75857448 -106557794 + GA-rich Low_complexity Low_complexity 2 38 0 192 152 0 0 chr6 75858063 75858096 -106557146 + (CATA)n Simple_repeat Simple_repeat 4 36 0 30 59 0 0 chr6 75858286 75858337 -106556905 + AT_rich Low_complexity Low_complexity 1 51 0 1138 180 71 4 chr6 75860544 75860811 -106554431 - MER33 DNA MER1_type -22 302 18 21 36 0 0 chr6 75863198 75863226 -106552016 + AT_rich Low_complexity Low_complexity 1 28 0 279 305 57 25 chr6 75863998 75864168 -106551074 + MIR SINE MIR 23 244 -18 197 425 28 0 chr6 75864387 75864528 -106550714 + L2 LINE L2 2420 2564 -750 212 339 101 0 chr6 75865139 75865248 -106549994 + L2 LINE L2 3193 3312 -1 184 373 32 64 chr6 75866313 75866533 -106548709 + L2 LINE L2 2538 2750 -564 225 290 84 46 chr6 75866648 75866779 -106548463 - MER91A DNA MER1_type -32 164 29 256 335 92 63 chr6 75866804 75867120 -106548122 + L2 LINE L2 2947 3271 -1 690 204 35 0 chr6 75867898 75868040 -106547202 - MER58B DNA MER1_type 0 341 195 2230 121 0 0 chr6 75868294 75868601 -106546641 - AluSg SINE Alu -3 307 1 986 224 41 9 chr6 75869794 75870013 -106545229 - MLT1F LTR MaLR 0 542 317 375 291 12 101 chr6 75870107 75870354 -106544888 + L2 LINE L2 2668 2892 -422 474 252 19 0 chr6 75870743 75870850 -106544392 + L2 LINE L2 3204 3312 -1 1221 175 57 7 chr6 75870955 75871235 -106544007 - L1MA9 LINE L1 0 6312 6019 2764 238 110 43 chr6 75871237 75872730 -106542512 - L1ME2 LINE L1 -8 6156 4561 16974 29 3 0 chr6 75874034 75876842 -106538400 - L1PA3 LINE L1 -2 6153 3339 195 275 100 25 chr6 75878324 75878404 -106536838 + MIR SINE MIR 102 187 -75 2435 62 0 3 chr6 75878739 75879044 -106536198 + AluY SINE Alu 1 304 -7 21 0 0 0 chr6 75879170 75879191 -106536051 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 75879497 75879518 -106535724 + AT_rich Low_complexity Low_complexity 1 21 0 189 370 33 0 chr6 75879840 75879932 -106535310 + MIR SINE MIR 54 148 -114 25 83 0 0 chr6 75881188 75881248 -106533994 + AT_rich Low_complexity Low_complexity 1 60 0 1347 162 106 50 chr6 75881929 75882250 -106532992 + MER44D DNA MER2_type 1 609 0 422 269 121 14 chr6 75883086 75883227 -106532015 - MIR3 SINE MIR -11 197 42 433 355 6 17 chr6 75884419 75884591 -106530651 + MER5B DNA MER1_type 1 170 -8 189 147 0 0 chr6 75885974 75886008 -106529234 + (CATA)n Simple_repeat Simple_repeat 1 34 0 2420 141 11 74 chr6 75886030 75886505 -106528737 - MER65A LTR ERV1 0 445 1 1998 231 50 12 chr6 75886505 75887002 -106528240 - MER65A-int LTR ERV1 0 4871 4356 1611 273 75 16 chr6 75887025 75887465 -106527777 - MER65A-int LTR ERV1 -742 4129 3664 188 333 72 0 chr6 75888181 75888250 -106526992 + MIR3 SINE MIR 111 184 -24 737 326 9 4 chr6 75888338 75888568 -106526674 - MIR SINE MIR -13 249 19 205 167 0 0 chr6 75891003 75891039 -106524203 + CT-rich Low_complexity Low_complexity 1 36 0 2240 103 0 0 chr6 75892224 75892526 -106522716 - AluSq SINE Alu -11 302 1 189 0 0 0 chr6 75893243 75893264 -106521978 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 830 134 5 38 chr6 75893771 75893957 -106521285 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 203 192 39 0 chr6 75893957 75894009 -106521233 + CT-rich Low_complexity Low_complexity 3 56 0 21 36 0 0 chr6 75894833 75894861 -106520381 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 75895014 75895049 -106520193 + AT_rich Low_complexity Low_complexity 1 35 0 816 124 6 50 chr6 75896126 75896287 -106518955 + L1MA10 LINE L1 6180 6333 -1 2271 98 7 0 chr6 75896311 75896618 -106518624 - AluSg SINE Alu -1 309 1 204 135 0 0 chr6 75897000 75897037 -106518205 + (TTA)n Simple_repeat Simple_repeat 1 37 0 804 263 105 0 chr6 75897050 75897278 -106517964 + MIR SINE MIR 11 262 0 292 306 117 20 chr6 75898036 75898232 -106517010 + MIR SINE MIR 48 262 0 480 35 0 0 chr6 75898388 75898446 -106516796 + (TA)n Simple_repeat Simple_repeat 2 59 0 1717 163 190 0 chr6 75898446 75898772 -106516470 - MER47B DNA MER2_type -5 413 26 207 0 0 0 chr6 75898778 75898801 -106516441 + (TG)n Simple_repeat Simple_repeat 2 24 0 901 239 8 85 chr6 75899715 75899974 -106515268 + MIR SINE MIR 2 240 -22 251 231 0 0 chr6 75902882 75902934 -106512308 + MIR SINE MIR 83 134 -128 1980 113 29 4 chr6 75904723 75905021 -106510221 + AluSg SINE Alu 1 305 0 442 300 91 29 chr6 75906831 75907041 -106508201 - MIR SINE MIR -31 231 9 3146 42 0 0 chr6 75907378 75907759 -106507483 - L1PA7 LINE L1 -5 6149 5769 381 43 0 0 chr6 75907759 75907806 -106507436 + L1PA7 LINE L1 5699 5745 -409 234 62 0 0 chr6 75909778 75909810 -106505432 + (GA)n Simple_repeat Simple_repeat 1 32 0 234 128 0 0 chr6 75910556 75910595 -106504647 + (TTA)n Simple_repeat Simple_repeat 1 39 0 337 301 98 49 chr6 75910595 75910798 -106504444 - MIR SINE MIR -10 252 40 1143 226 55 80 chr6 75911045 75911599 -106503643 + MER39 LTR ERV1 1 585 0 676 249 74 48 chr6 75911873 75912044 -106503198 + LTR33A LTR ERVL 19 201 -322 1719 42 0 0 chr6 75912044 75912258 -106502984 - L1PA3 LINE L1 0 6155 5942 676 249 74 48 chr6 75912258 75912355 -106502887 + LTR33A LTR ERVL 201 294 -229 525 200 62 41 chr6 75912415 75912560 -106502682 - MER115 DNA AcHobo -11 682 535 304 308 15 52 chr6 75912834 75913043 -106502199 - MER115 DNA AcHobo -159 534 293 577 277 30 0 chr6 75913329 75913495 -106501747 + LTR33A LTR ERVL 353 523 0 585 28 0 0 chr6 75916666 75916737 -106498505 + (TC)n Simple_repeat Simple_repeat 2 72 0 877 201 154 8 chr6 75917397 75917656 -106497586 - MER67D LTR ERV1 0 514 218 4695 159 30 46 chr6 75917677 75919320 -106495922 - L1MA4 LINE L1 -6 6294 4541 4305 181 16 6 chr6 75919318 75920183 -106495059 + L1MA4 LINE L1 3658 4531 -1615 * 566 116 50 83 chr6 75920195 75920316 -106494926 - MER67D LTR ERV1 -300 214 98 13560 149 25 47 chr6 75920316 75922824 -106492418 + Tigger2 DNA MER2_type 1 2452 -266 561 308 32 45 chr6 75924280 75924527 -106490715 + MIR SINE MIR 19 262 0 239 303 13 13 chr6 75925134 75925210 -106490032 - MER2 DNA MER2_type 0 345 270 985 192 6 0 chr6 75925297 75925469 -106489773 - MER2 DNA MER2_type -172 173 1 422 329 49 25 chr6 75927460 75927656 -106487586 + MIR SINE MIR 16 211 -51 887 291 98 20 chr6 75928026 75928383 -106486859 - MLT1J LTR MaLR -126 385 1 21 0 0 0 chr6 75928916 75928937 -106486305 + AT_rich Low_complexity Low_complexity 1 21 0 416 361 76 24 chr6 75930757 75931220 -106484022 + L2 LINE L2 1218 1704 -1610 210 229 33 0 chr6 75931280 75931341 -106483901 - MIR SINE MIR -15 247 185 415 286 146 27 chr6 75931463 75931764 -106483478 - L2 LINE L2 -700 2614 2278 431 301 75 0 chr6 75932263 75932409 -106482833 - MIR SINE MIR -31 231 75 731 254 12 0 chr6 75932453 75932622 -106482620 + MER5B DNA MER1_type 7 177 -1 905 125 19 6 chr6 75933075 75933235 -106482007 - L1MA8 LINE L1 -2 6289 6128 24 32 0 0 chr6 75934377 75934408 -106480834 + AT_rich Low_complexity Low_complexity 1 31 0 304 299 13 0 chr6 75934557 75934634 -106480608 + MIR SINE MIR 64 141 -121 202 243 0 117 chr6 75934752 75934855 -106480387 - MIR SINE MIR 0 262 172 22 0 0 0 chr6 75935596 75935618 -106479624 + AT_rich Low_complexity Low_complexity 1 22 0 240 299 69 14 chr6 75935720 75935864 -106479378 + L1M4 LINE L1 3329 3480 -2666 216 414 0 0 chr6 75935872 75935959 -106479283 - MIR3 SINE MIR -10 198 112 189 0 0 0 chr6 75936193 75936214 -106479028 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 316 268 188 0 chr6 75936315 75936453 -106478789 + L1ME3 LINE L1 5947 6110 -52 417 308 131 39 chr6 75937222 75939213 -106476029 - L1MEd LINE L1 -1788 4341 2157 36 77 0 0 chr6 75939595 75939673 -106475569 + AT_rich Low_complexity Low_complexity 1 78 0 311 138 0 15 chr6 75939680 75939745 -106475497 - L1PA13 LINE L1 -2 6161 6098 589 319 27 30 chr6 75939782 75940152 -106475090 - HAL1 LINE L1 -762 1745 1377 252 0 0 0 chr6 75940152 75940180 -106475062 + (TG)n Simple_repeat Simple_repeat 2 29 0 330 278 80 60 chr6 75940219 75940370 -106474872 - L1MEd LINE L1 -4918 1201 1048 5173 109 19 6 chr6 75941185 75941976 -106473266 - L1PA13 LINE L1 -2 6161 5361 1412 168 0 121 chr6 75945247 75945569 -106469673 + AluSx SINE Alu 1 283 -29 285 244 0 0 chr6 75946101 75946187 -106469055 + GA-rich Low_complexity Low_complexity 1 86 0 22 0 0 0 chr6 75946191 75946213 -106469029 + AT_rich Low_complexity Low_complexity 1 22 0 540 182 20 0 chr6 75948779 75948893 -106466349 - L1ME1 LINE L1 -9 6157 6050 761 293 34 0 chr6 75950317 75950522 -106464720 - MER20 DNA MER1_type -6 213 2 23 0 0 0 chr6 75952968 75952991 -106462251 + AT_rich Low_complexity Low_complexity 1 23 0 1980 53 76 4 chr6 75952993 75953346 -106461896 + AluY SINE Alu 1 372 0 560 222 122 50 chr6 75954127 75954307 -106460935 + MIR SINE MIR 64 256 -6 38 0 0 0 chr6 75954448 75954486 -106460756 + AT_rich Low_complexity Low_complexity 1 38 0 763 119 48 0 chr6 75955377 75955503 -106459739 - L1PA13 LINE L1 0 6163 6032 298 310 110 0 chr6 75956689 75956789 -106458453 + MER5B DNA MER1_type 2 112 -66 21 0 0 0 chr6 75958445 75958466 -106456776 + AT_rich Low_complexity Low_complexity 1 21 0 6239 60 5 1 chr6 75959944 75960739 -106454503 - L1PA7 LINE L1 0 6154 5357 23 0 0 0 chr6 75962203 75962226 -106453016 + AT_rich Low_complexity Low_complexity 1 23 0 227 54 27 0 chr6 75962458 75962495 -106452747 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2436 11 0 0 chr6 75962511 75962790 -106452452 - L1PA2 LINE L1 -2 6153 5875 23 33 0 0 chr6 75962936 75962966 -106452276 + AT_rich Low_complexity Low_complexity 1 30 0 220 229 0 0 chr6 75963032 75963080 -106452162 + A-rich Low_complexity Low_complexity 1 48 0 7845 92 16 3 chr6 75964624 75965733 -106449509 + L1PA7 LINE L1 3687 4810 -1336 6909 60 6 6 chr6 75965733 75966695 -106448547 + L1PA7 LINE L1 5196 6154 0 1633 168 3 39 chr6 75966817 75967127 -106448115 + AluJo SINE Alu 1 299 -13 2006 102 10 51 chr6 75967690 75968003 -106447239 + AluSx SINE Alu 1 300 -12 540 316 38 19 chr6 75968308 75968517 -106446725 + MIR SINE MIR 22 234 -28 194 0 39 0 chr6 75970087 75970113 -106445129 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2058 101 14 7 chr6 75970421 75970717 -106444525 - AluSq SINE Alu -15 298 1 21 36 0 0 chr6 75970727 75970755 -106444487 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr6 75972093 75972117 -106443125 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2207 101 3 0 chr6 75973107 75973395 -106441847 + AluSp SINE Alu 1 289 -24 441 173 346 8 chr6 75973997 75974130 -106441112 + MER5B DNA MER1_type 1 178 0 1878 203 18 50 chr6 75975286 75975744 -106439498 - LTR47B LTR ERVL 0 443 1 224 182 0 18 chr6 75975809 75975864 -106439378 + GA-rich Low_complexity Low_complexity 1 54 0 187 344 0 33 chr6 75975928 75976018 -106439224 + MIR SINE MIR 58 144 -118 526 345 51 30 chr6 75976134 75976430 -106438812 - L3 LINE CR1 -100 1477 1176 281 341 30 22 chr6 75976746 75976881 -106438361 - L3 LINE CR1 -854 723 588 813 213 38 6 chr6 75977495 75977678 -106437564 + MER5A DNA MER1_type 1 189 0 22 0 0 0 chr6 75978247 75978269 -106436973 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 75979315 75979354 -106435888 + AT_rich Low_complexity Low_complexity 1 39 0 213 39 0 0 chr6 75980901 75980927 -106434315 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 198 0 0 0 chr6 75981153 75981175 -106434067 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 233 305 219 21 chr6 75982722 75982909 -106432333 - MIR SINE MIR 0 262 40 371 269 123 37 chr6 75984468 75984880 -106430362 + LTR33A LTR ERVL 17 503 -20 230 242 30 30 chr6 75985170 75985236 -106430006 + MIR SINE MIR 155 220 -42 647 319 136 20 chr6 75986155 75986623 -106428619 - L2 LINE L2 -1 3312 2784 3033 20 0 0 chr6 75986656 75987009 -106428233 - L1PA2 LINE L1 -469 5686 5334 4068 17 0 4 chr6 75987009 75987483 -106427759 + L1PA2 LINE L1 5680 6152 -3 183 162 0 0 chr6 75987501 75987538 -106427704 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 594 301 307 11 chr6 75987584 75988242 -106427000 - L2 LINE L2 -650 2664 1812 1749 188 10 0 chr6 75988742 75989040 -106426202 + AluJb SINE Alu 1 301 -11 359 318 8 23 chr6 75989406 75989535 -106425707 + MIR SINE MIR 34 160 -102 25 0 0 0 chr6 75989845 75989870 -106425372 + AT_rich Low_complexity Low_complexity 1 25 0 209 286 91 0 chr6 75994047 75994124 -106421118 + L2 LINE L2 3186 3269 -3 294 311 108 52 chr6 75994542 75994828 -106420414 - L2 LINE L2 -576 2738 2437 1256 180 0 0 chr6 75995088 75995294 -106419948 + AluSg/x SINE Alu 103 308 -4 1655 175 9 25 chr6 75995408 75995723 -106419519 - AluJb SINE Alu -2 310 1 1662 180 24 3 chr6 75996534 75996828 -106418414 + MER39 LTR ERV1 6 305 -402 330 269 0 26 chr6 75997379 75997457 -106417785 - L2 LINE L2 -8 3264 3189 601 218 75 3 chr6 75997702 75997867 -106417375 + MIR SINE MIR 16 198 -62 259 360 151 21 chr6 75997863 75998049 -106417193 - MIR SINE MIR 0 262 53 * 295 382 30 8 chr6 76000089 76000220 -106415022 + L2 LINE L2 3134 3267 -5 196 310 0 86 chr6 76002883 76002999 -106412243 + MIR SINE MIR 23 128 -80 210 71 0 0 chr6 76004271 76004299 -106410943 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 279 282 0 0 chr6 76004608 76004718 -106410524 + GA-rich Low_complexity Low_complexity 2 111 0 187 273 0 0 chr6 76004822 76004866 -106410376 - L3 LINE CR1 -566 1011 968 290 309 41 0 chr6 76004967 76005064 -106410178 - L3 LINE CR1 -552 1025 925 190 309 138 21 chr6 76006427 76006521 -106408721 - MIR SINE MIR -4 258 154 240 398 0 0 chr6 76006564 76006662 -106408580 - MIR SINE MIR -114 148 51 242 322 0 0 chr6 76006724 76006783 -106408459 + L2 LINE L2 3205 3263 -9 180 97 0 0 chr6 76007041 76007072 -106408170 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 645 213 0 0 chr6 76007072 76007180 -106408062 - FLAM_A SINE Alu -33 109 2 326 260 0 39 chr6 76010186 76010290 -106404952 - L1MC4 LINE L1 -1346 6696 6597 313 332 88 88 chr6 76010886 76011205 -106404037 + L2 LINE L2 2946 3264 -8 265 292 42 10 chr6 76011422 76011518 -106403724 - MIR SINE MIR -76 132 34 347 59 0 0 chr6 76011780 76011831 -106403411 - L1PA7 LINE L1 0 6154 6104 500 100 0 0 chr6 76011831 76011911 -106403331 + L1PA4 LINE L1 5954 6033 -122 1828 235 37 68 chr6 76012197 76012843 -106402399 - MER92B LTR ERV1 -1 635 10 1692 164 14 0 chr6 76013169 76013456 -106401786 + AluJb SINE Alu 1 291 -21 1113 147 101 83 chr6 76013589 76013829 -106401413 - MER67C LTR ERV1 -243 271 128 219 103 0 0 chr6 76013829 76013868 -106401374 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1113 147 101 83 chr6 76013868 76013999 -106401243 - MER67C LTR ERV1 -386 128 1 273 407 35 14 chr6 76014556 76014701 -106400541 - L2 LINE L2 -1 3271 3124 2124 172 9 26 chr6 76015117 76015536 -106399706 + MLT2D LTR ERVL 1 412 -2 618 279 76 6 chr6 76015765 76015937 -106399305 - MIR SINE MIR -71 191 8 26 30 0 0 chr6 76017034 76017067 -106398175 + AT_rich Low_complexity Low_complexity 1 33 0 2264 109 0 0 chr6 76017075 76017368 -106397874 - AluSc SINE Alu -16 293 1 21 0 0 0 chr6 76018620 76018641 -106396601 + AT_rich Low_complexity Low_complexity 1 21 0 2341 92 0 0 chr6 76019161 76019456 -106395786 + AluY SINE Alu 1 295 -16 182 302 0 19 chr6 76019611 76019664 -106395578 + L3 LINE CR1 1523 1574 -3 22 0 0 0 chr6 76021058 76021080 -106394162 + AT_rich Low_complexity Low_complexity 1 22 0 2024 100 4 0 chr6 76021410 76021700 -106393542 + AluSc SINE Alu 17 307 0 448 146 218 0 chr6 76021700 76021810 -106393432 - MER47A DNA MER2_type -202 164 31 280 100 0 0 chr6 76021814 76021854 -106393388 + Alu SINE Alu 1 40 -262 181 0 69 0 chr6 76021858 76021887 -106393355 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3474 184 57 127 chr6 76022574 76023436 -106391806 - Charlie1 DNA MER1_type 0 2761 1841 842 157 14 0 chr6 76023436 76023576 -106391666 + FRAM SINE Alu 35 176 0 3474 184 57 127 chr6 76023576 76024128 -106391114 - Charlie1 DNA MER1_type -920 1841 1 436 241 70 44 chr6 76024171 76024441 -106390801 + HAL1 LINE L1 2100 2376 -131 988 290 94 40 chr6 76024474 76024954 -106390288 + L2 LINE L2 2805 3310 -3 312 233 27 0 chr6 76025001 76025074 -106390168 + HAL1 LINE L1 2431 2505 -2 744 160 39 19 chr6 76025331 76025487 -106389755 - L1MA10 LINE L1 -1 6333 6175 332 373 0 9 chr6 76026165 76026275 -106388967 - L2 LINE L2 -1 3271 3163 576 350 90 30 chr6 76026472 76027072 -106388170 - L2 LINE L2 -635 2679 2044 688 303 93 24 chr6 76027649 76028025 -106387217 + MLT1J LTR MaLR 100 501 -10 1042 168 5 0 chr6 76028177 76028374 -106386868 + L1PB1 LINE L1 3 200 -6663 9434 154 40 4 chr6 76028374 76031448 -106383794 + L1PB1 LINE L1 634 3934 -2928 5718 32 0 0 chr6 76031474 76032189 -106383053 - L1PA3 LINE L1 -916 5230 4516 7583 30 1 0 chr6 76032202 76033100 -106382142 + L1PA3 LINE L1 5254 6152 -3 1964 213 2 7 chr6 76033116 76033572 -106381670 + L1PB1 LINE L1 4226 4679 -2183 1174 123 7 0 chr6 76033572 76033727 -106381515 + AluY SINE Alu 1 156 -155 5166 148 15 16 chr6 76033828 76035244 -106379998 + L1PB1 LINE L1 5387 6800 -67 437 318 144 10 chr6 76035589 76035784 -106379458 + L3 LINE CR1 88 308 -1269 2510 57 3 0 chr6 76037241 76037538 -106377704 - AluY SINE Alu -13 298 1 306 0 0 0 chr6 76037911 76037945 -106377297 + (TAA)n Simple_repeat Simple_repeat 1 34 0 236 325 26 26 chr6 76037979 76038130 -106377112 - MIR SINE MIR -25 237 87 1520 202 59 34 chr6 76038307 76038663 -106376579 - MLT1A1 LTR MaLR 0 365 1 358 317 48 11 chr6 76040215 76040401 -106374841 - L1MC/D LINE L1 -2016 5792 5600 221 276 17 0 chr6 76041214 76041272 -106373970 + (CATA)n Simple_repeat Simple_repeat 3 61 0 1785 190 19 16 chr6 76042141 76042504 -106372738 - MLT1A1 LTR MaLR 0 365 2 246 230 20 40 chr6 76042509 76042609 -106372633 - MLT1J LTR MaLR 0 511 414 540 243 68 23 chr6 76042763 76042940 -106372302 - MLT1J LTR MaLR -318 193 9 464 193 36 36 chr6 76043169 76043309 -106371933 + L1MA10 LINE L1 6188 6327 -7 292 308 0 9 chr6 76047188 76047295 -106367947 - MER94 DNA DNA -28 106 1 447 277 54 15 chr6 76047549 76047679 -106367563 + L2 LINE L2 3177 3311 -2 1695 123 45 0 chr6 76048272 76048392 -106366850 - AluSp SINE Alu -59 254 141 330 26 0 0 chr6 76048392 76048431 -106366811 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1695 123 45 0 chr6 76048431 76048553 -106366689 - AluSp SINE Alu -172 141 1 349 311 85 65 chr6 76049046 76049306 -106365936 - MLT1K LTR MaLR -163 425 161 211 211 0 0 chr6 76050450 76050502 -106364740 + T-rich Low_complexity Low_complexity 1 52 0 4833 98 20 172 chr6 76050503 76051628 -106363614 - SVA Other Other -1 1385 432 1624 152 81 12 chr6 76051671 76052078 -106363164 - SVA Other Other -518 868 434 4781 135 38 15 chr6 76052123 76052970 -106362272 - SVA Other Other -518 868 3 355 64 0 0 chr6 76052973 76053020 -106362222 - AluSq/x SINE Alu -175 127 81 1961 88 69 0 chr6 76053635 76053897 -106361345 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr6 76053897 76053924 -106361318 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1878 207 50 59 chr6 76054219 76054926 -106360316 - MER92B LTR ERV1 0 636 1 639 211 111 0 chr6 76055013 76055184 -106360058 + MLT1E1 LTR MaLR 5 194 -460 198 91 0 0 chr6 76055468 76055501 -106359741 + (T)n Simple_repeat Simple_repeat 1 33 0 285 336 47 0 chr6 76055613 76055720 -106359522 + MIR SINE MIR 80 191 -71 21 57 0 0 chr6 76058187 76058222 -106357020 + AT_rich Low_complexity Low_complexity 1 35 0 40047 41 23 2 chr6 76058402 76064431 -106350811 - L1PA2 LINE L1 0 6155 1 1921 228 72 0 chr6 76064960 76065434 -106349808 + Tigger6a DNA MER2_type 32 539 -544 772 364 38 18 chr6 76065435 76065883 -106349359 + L1M3b LINE L1 1217 1673 -5823 4249 252 37 23 chr6 76065941 76066798 -106348444 + L1M3b LINE L1 2007 2839 -4726 1862 180 0 16 chr6 76066798 76067109 -106348133 + AluSx SINE Alu 1 306 -6 4249 252 37 23 chr6 76067109 76067920 -106347322 + L1M3b LINE L1 2839 3637 -3928 2120 158 5 44 chr6 76067981 76068361 -106346881 + Tigger1 DNA MER2_type 36 400 -2018 1703 91 0 0 chr6 76068361 76068580 -106346662 + AluY SINE Alu 93 311 0 2120 158 5 44 chr6 76068580 76068609 -106346633 + Tigger1 DNA MER2_type 400 429 -1989 742 129 0 0 chr6 76068611 76068735 -106346507 + L1MA6 LINE L1 5564 5687 -613 2731 183 44 31 chr6 76068735 76069282 -106345960 - MER52A LTR ERV1 0 1755 1202 2714 113 119 64 chr6 76069285 76069944 -106345298 + LTR12 LTR ERV1 1 579 -135 1772 195 51 68 chr6 76069944 76070516 -106344726 - MER52A LTR ERV1 -439 839 293 4500 116 24 7 chr6 76070516 76071222 -106344020 + LTR30 LTR ERV1 4 721 -1 1772 195 51 68 chr6 76071222 76071510 -106343732 - MER52A LTR ERV1 -985 293 1 2003 191 17 9 chr6 76071510 76071971 -106343271 + L1MA6 LINE L1 5684 6148 -152 * 6172 200 6 1 chr6 76071962 76073278 -106341964 - L1PA15 LINE L1 -750 5396 4074 4789 123 31 14 chr6 76073276 76074192 -106341050 + L1PA15 LINE L1 5396 6165 0 * 2142 202 40 18 chr6 76074202 76074746 -106340496 + Tigger6a DNA MER2_type 528 1083 0 263 259 13 103 chr6 76075712 76075936 -106339306 - L1ME4a LINE L1 -78 6043 5840 759 182 68 42 chr6 76076002 76076301 -106338941 + MLT1A1 LTR MaLR 1 363 -2 325 295 116 32 chr6 76076303 76076710 -106338532 - L1ME4a LINE L1 -372 5749 5309 30 69 0 0 chr6 76076787 76076845 -106338397 + AT_rich Low_complexity Low_complexity 1 58 0 2421 56 7 10 chr6 76076861 76077166 -106338076 - AluY SINE Alu -7 304 1 397 248 44 44 chr6 76077431 76077734 -106337508 - L1ME LINE L1 -5168 902 465 234 0 0 0 chr6 76078182 76078208 -106337034 + (T)n Simple_repeat Simple_repeat 1 26 0 436 278 8 8 chr6 76078231 76078357 -106336885 - L1ME LINE L1 -5617 453 328 26 64 0 0 chr6 76078703 76078750 -106336492 + AT_rich Low_complexity Low_complexity 1 47 0 189 0 0 0 chr6 76079350 76079371 -106335871 + (TG)n Simple_repeat Simple_repeat 2 22 0 2583 116 30 14 chr6 76079406 76079844 -106335398 + L1PA16 LINE L1 5642 6086 -80 23 0 0 0 chr6 76080233 76080256 -106334986 + AT_rich Low_complexity Low_complexity 1 23 0 204 392 17 23 chr6 76080290 76080466 -106334776 - MER5B DNA MER1_type 0 178 4 304 321 29 21 chr6 76080493 76080633 -106334609 - L1MEd LINE L1 -5003 1116 976 1271 228 24 21 chr6 76080919 76081208 -106334034 + AluJo SINE Alu 23 312 0 21 0 0 0 chr6 76081359 76081380 -106333862 + AT_rich Low_complexity Low_complexity 1 21 0 222 392 0 25 chr6 76081558 76081637 -106333605 - L2 LINE L2 -62 3210 3134 630 208 173 4 chr6 76082491 76082722 -106332520 + L1MC4a LINE L1 5637 5906 -1902 420 20 0 0 chr6 76082789 76082838 -106332404 + (CA)n Simple_repeat Simple_repeat 2 50 0 31 68 0 0 chr6 76082929 76082988 -106332254 + AT_rich Low_complexity Low_complexity 1 59 0 231 114 0 0 chr6 76083337 76083372 -106331870 + (TG)n Simple_repeat Simple_repeat 2 36 0 1784 196 16 11 chr6 76084214 76084577 -106330665 + MLT1A1 LTR MaLR 1 365 0 202 291 55 0 chr6 76084625 76084680 -106330562 + L2 LINE L2 3210 3267 -5 225 256 189 0 chr6 76084700 76084790 -106330452 + MIR SINE MIR 66 172 -90 841 145 0 0 chr6 76085312 76085436 -106329806 - AluSg/x SINE Alu -12 300 177 1644 121 4 13 chr6 76085443 76085674 -106329568 - AluSg SINE Alu -78 232 4 6954 129 37 32 chr6 76085883 76087160 -106328082 + pTR5 LTR ERV1 743 2025 -413 342 183 0 0 chr6 76087160 76087231 -106328011 + LTR30 LTR ERV1 544 614 -108 24663 94 29 8 chr6 76087231 76091124 -106324118 + HERV9 LTR ERV1 17 3681 -1935 4175 103 3 21 chr6 76091142 76092030 -106323212 + HERV9 LTR ERV1 504 8390 -9 1562 106 15 64 chr6 76092129 76092393 -106322849 + LTR12 LTR ERV1 308 558 -156 936 289 126 14 chr6 76092445 76092801 -106322441 + L2 LINE L2 1371 1766 -1548 2193 231 78 44 chr6 76092860 76093549 -106321693 - MER21B LTR ERV1 -60 803 84 2337 145 62 7 chr6 76093549 76093955 -106321287 + MSTA LTR MaLR 1 428 0 2193 231 78 44 chr6 76093955 76094031 -106321211 - MER21B LTR ERV1 -779 84 12 625 241 33 69 chr6 76094065 76094154 -106321088 + L2 LINE L2 1771 1862 -1452 2197 133 0 0 chr6 76094154 76094456 -106320786 - AluSg1 SINE Alu -7 302 1 625 241 33 69 chr6 76094456 76094611 -106320631 + L2 LINE L2 1862 2006 -1308 922 246 85 0 chr6 76094635 76094907 -106320335 + L2 LINE L2 2466 2760 -554 189 216 34 114 chr6 76094950 76095038 -106320204 + L2 LINE L2 2854 2934 -338 23 33 0 0 chr6 76096679 76096709 -106318533 + AT_rich Low_complexity Low_complexity 1 30 0 991 237 33 27 chr6 76096746 76098287 -106316955 + L1MC/D LINE L1 3773 5495 -743 207 69 0 0 chr6 76098484 76098513 -106316729 + (CA)n Simple_repeat Simple_repeat 2 30 0 250 270 67 17 chr6 76098891 76099069 -106316173 + L1ME LINE L1 5155 5341 -805 39470 46 2 1 chr6 76099070 76105235 -106310007 + L1PA4 LINE L1 3 6173 0 553 278 33 60 chr6 76105241 76105543 -106309699 + L1ME LINE L1 5315 5608 -556 600 215 77 31 chr6 76106097 76106292 -106308950 + L1ME LINE L1 5605 5808 -362 718 216 166 35 chr6 76107133 76107476 -106307766 + Charlie4a DNA MER1_type 29 416 -92 575 256 45 11 chr6 76107527 76107703 -106307539 - MIR SINE MIR -67 195 14 2620 89 17 30 chr6 76108244 76108647 -106306595 - L1PA13 LINE L1 -8 6155 5758 404 219 24 0 chr6 76110135 76110217 -106305025 + L2 LINE L2 3230 3313 0 414 286 148 37 chr6 76110566 76110755 -106304487 - MIR SINE MIR -49 213 4 756 301 45 12 chr6 76110792 76111038 -106304204 - MIR SINE MIR 0 262 9 1700 138 53 23 chr6 76111366 76111563 -106303679 + MER44D DNA MER2_type 28 218 -2273 2978 107 62 0 chr6 76111563 76112001 -106303241 + MER4C LTR ERV1 1 465 0 1700 138 53 23 chr6 76112001 76112107 -106303135 + MER44D DNA MER2_type 218 609 0 4072 213 39 49 chr6 76112242 76114225 -106301017 + L1M3f LINE L1 1240 3429 -4136 42213 40 22 0 chr6 76114225 76120248 -106294994 + L1PA2 LINE L1 1 6155 0 11222 213 27 12 chr6 76120258 76122561 -106292681 + L1M3f LINE L1 3379 5804 -1761 1710 179 28 14 chr6 76122561 76122852 -106292390 + AluSx SINE Alu 2 296 -16 11222 213 27 12 chr6 76122852 76123534 -106291708 + L1M3f LINE L1 5804 6474 -1091 1606 202 48 14 chr6 76123892 76124244 -106290998 + MLT2D LTR ERVL 1 364 -50 630 48 48 40 chr6 76124245 76124369 -106290873 + (TAGA)n Simple_repeat Simple_repeat 3 127 0 244 182 0 0 chr6 76124370 76124414 -106290828 + MLT2D LTR ERVL 418 461 -3 198 0 0 0 chr6 76124614 76124636 -106290606 + (TG)n Simple_repeat Simple_repeat 2 23 0 416 279 139 0 chr6 76124974 76125103 -106290139 + MER69 DNA AcHobo 1 147 -2379 389 350 125 50 chr6 76125220 76125474 -106289768 + L3 LINE CR1 711 944 -633 599 208 8 8 chr6 76125474 76125604 -106289638 + FLAM_C SINE Alu 1 130 -3 2368 170 46 64 chr6 76125605 76126169 -106289073 - MLT2B3 LTR ERVL 0 554 1 389 350 125 50 chr6 76126169 76126497 -106288745 + L3 LINE CR1 943 1339 -238 443 255 161 37 chr6 76126761 76126922 -106288320 - MER5A DNA MER1_type 0 189 9 356 273 117 8 chr6 76126985 76127113 -106288129 + MLT1I LTR MaLR 197 338 -71 774 175 26 26 chr6 76127667 76127821 -106287421 + L1MA9 LINE L1 6121 6274 -38 26 50 0 0 chr6 76130122 76130162 -106285080 + AT_rich Low_complexity Low_complexity 1 40 0 3197 256 30 18 chr6 76130342 76131236 -106284006 + L1PA13 LINE L1 1340 2244 -4543 1640 125 57 37 chr6 76131244 76131541 -106283701 + THE1B LTR MaLR 1 303 -61 189 0 0 0 chr6 76131590 76131611 -106283631 + (TA)n Simple_repeat Simple_repeat 1 21 0 330 26 0 0 chr6 76131645 76131684 -106283558 + (TC)n Simple_repeat Simple_repeat 2 40 0 547 92 53 20 chr6 76131684 76131836 -106283406 + (TA)n Simple_repeat Simple_repeat 1 157 0 1232 231 0 0 chr6 76131841 76132096 -106283146 + L1PA16 LINE L1 1531 1785 -5002 * 6471 229 18 35 chr6 76132095 76134012 -106281230 + L1 LINE L1 3095 4979 -1818 * 42289 37 21 1 chr6 76134006 76140032 -106275210 + L1PA2 LINE L1 6 6154 -1 227 296 41 20 chr6 76140071 76140169 -106275073 - MIR3 SINE MIR -31 177 78 5438 176 48 10 chr6 76140548 76142328 -106272914 + L1PA16 LINE L1 4967 6817 0 27 49 0 0 chr6 76142348 76142389 -106272853 + AT_rich Low_complexity Low_complexity 1 41 0 328 269 43 1 chr6 76142700 76142807 -106272435 + MER58 DNA MER1_type 1 94 -121 225 246 82 0 chr6 76142812 76142873 -106272369 + MER58 DNA MER1_type 2355 2420 0 732 273 113 31 chr6 76142886 76143396 -106271846 - L1ME1 LINE L1 -222 5944 5399 333 248 96 24 chr6 76143409 76143534 -106271708 + LTR41 LTR ERVL 7 140 -633 518 219 146 29 chr6 76143809 76144014 -106271228 + LTR41 LTR ERVL 567 795 0 621 115 29 14 chr6 76144100 76144239 -106271003 + (TAGA)n Simple_repeat Simple_repeat 4 144 0 741 305 100 31 chr6 76144241 76145265 -106269977 - L1ME1 LINE L1 -842 5304 4211 366 23 0 0 chr6 76145887 76145930 -106269312 + (TG)n Simple_repeat Simple_repeat 1 43 0 318 312 126 21 chr6 76145934 76146315 -106268927 + L1ME4a LINE L1 5503 5923 -198 566 222 170 13 chr6 76146351 76146504 -106268738 - MIR SINE MIR -25 237 61 395 232 20 0 chr6 76146539 76146638 -106268604 + L1ME4a LINE L1 6000 6100 -21 2111 199 63 59 chr6 76148133 76148675 -106266567 - MLT1E LTR MaLR -5 588 45 260 243 135 0 chr6 76149531 76149605 -106265637 - MER5B DNA MER1_type -94 84 1 490 296 49 40 chr6 76149611 76149834 -106265408 + MIR SINE MIR 23 247 -15 555 328 115 42 chr6 76150064 76150581 -106264661 - L2 LINE L2 -46 3267 2699 1533 179 62 0 chr6 76150581 76150917 -106264325 - L1MB4 LINE L1 -1 6179 5823 555 328 115 42 chr6 76150917 76151024 -106264218 - L2 LINE L2 -614 2699 2601 249 33 0 0 chr6 76151093 76151123 -106264119 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 399 73 0 0 chr6 76151122 76151177 -106264065 + (TG)n Simple_repeat Simple_repeat 2 56 0 351 279 23 8 chr6 76151348 76151477 -106263765 - MARNA DNA Mariner -431 155 25 1429 243 96 46 chr6 76151795 76152360 -106262882 + MLT1G1 LTR MaLR 3 595 0 1830 161 16 0 chr6 76154026 76154331 -106260911 + MER58B DNA MER1_type 31 340 -1 21 0 0 0 chr6 76154501 76154522 -106260720 + AT_rich Low_complexity Low_complexity 1 21 0 841 123 15 0 chr6 76154597 76154727 -106260515 - FRAM SINE Alu -6 170 39 253 374 22 7 chr6 76154756 76154895 -106260347 - MIR3 SINE MIR -13 195 55 1064 241 0 0 chr6 76155033 76155236 -106260006 + MER58A DNA MER1_type 13 215 -9 220 344 28 75 chr6 76155279 76155300 -106259942 + L2 LINE L2 2835 2855 -417 1018 284 86 43 chr6 76155300 76155789 -106259453 + MLT1J LTR MaLR 1 510 -1 220 344 28 75 chr6 76155789 76156020 -106259222 + L2 LINE L2 2855 3075 -197 25 31 0 0 chr6 76156172 76156204 -106259038 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 76156360 76156382 -106258860 + AT_rich Low_complexity Low_complexity 1 22 0 893 216 51 76 chr6 76156461 76156640 -106258602 - MLT1A1 LTR MaLR 0 365 183 4665 114 34 4 chr6 76156640 76156983 -106258259 - L1PB1 LINE L1 -8 6143 5812 243 0 0 0 chr6 76156983 76157010 -106258232 + (TA)n Simple_repeat Simple_repeat 1 27 0 4665 114 34 4 chr6 76157010 76157378 -106257864 - L1PB1 LINE L1 -339 5812 5411 893 216 51 76 chr6 76157378 76157642 -106257600 - MLT1A1 LTR MaLR -182 183 1 3371 153 30 48 chr6 76158824 76158956 -106256286 - MER67C LTR ERV1 0 710 577 2113 110 27 0 chr6 76158956 76159256 -106255986 - AluSc SINE Alu -1 308 1 3371 153 30 48 chr6 76159256 76159846 -106255396 - MER67C LTR ERV1 -133 577 1 193 313 15 99 chr6 76160080 76160211 -106255031 + MER5A DNA MER1_type 70 189 0 424 346 85 5 chr6 76161341 76161552 -106253690 - MIR SINE MIR -7 255 28 260 248 56 16 chr6 76161912 76162037 -106253205 - Charlie7 DNA MER1_type -246 2366 2237 639 249 80 32 chr6 76162087 76162336 -106252906 - Charlie7 DNA MER1_type -526 2086 1826 847 102 0 48 chr6 76162336 76162483 -106252759 - L1PA13 LINE L1 0 6163 6024 870 242 113 35 chr6 76162566 76163028 -106252214 - Charlie7 DNA MER1_type -2049 563 66 1209 195 38 0 chr6 76163243 76163453 -106251789 + AluJb SINE Alu 14 231 -81 276 224 186 13 chr6 76163503 76163659 -106251583 - MLT1J LTR MaLR -31 480 298 367 254 27 27 chr6 76165658 76165768 -106249474 - MIR SINE MIR -85 177 68 24 67 0 0 chr6 76167204 76167249 -106247993 + AT_rich Low_complexity Low_complexity 1 45 0 236 100 25 0 chr6 76167768 76167808 -106247434 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 2429 62 3 46 chr6 76167915 76168239 -106247003 - AluY SINE Alu -1 310 1 725 220 79 6 chr6 76168401 76168578 -106246664 - L1ME3 LINE L1 0 6162 5973 519 253 11 22 chr6 76168577 76168755 -106246487 - L1M4 LINE L1 -1404 4742 4567 * 1905 225 87 42 chr6 76168795 76169563 -106245679 - L1M4 LINE L1 -1542 4604 3802 2044 132 0 0 chr6 76169888 76170175 -106245067 - AluSx SINE Alu -21 291 5 255 262 0 9 chr6 76170567 76170674 -106244568 + (TA)n Simple_repeat Simple_repeat 1 106 0 347 41 20 0 chr6 76171115 76171164 -106244078 + (CA)n Simple_repeat Simple_repeat 2 51 0 1319 326 127 11 chr6 76171522 76172469 -106242773 + L2 LINE L2 2205 3256 -57 2623 170 68 53 chr6 76173431 76173977 -106241265 + MLT2B3 LTR ERVL 1 554 0 1944 164 20 0 chr6 76174344 76174685 -106240557 + MER7A DNA MER2_type 1 346 0 452 330 78 58 chr6 76174727 76175109 -106240133 + L3b LINE CR1 1108 1497 -86 4787 10 0 0 chr6 76175168 76175794 -106239448 - L1PA2 LINE L1 -357 5798 5173 2897 21 0 0 chr6 76175794 76176165 -106239077 + L1PA2 LINE L1 5805 6178 0 717 272 80 30 chr6 76178035 76178336 -106236906 - MLT1K LTR MaLR 0 588 273 395 279 0 6 chr6 76178670 76178842 -106236400 + CT-rich Low_complexity Low_complexity 1 171 0 31268 108 13 63 chr6 76179035 76185503 -106229739 + L1PA7 LINE L1 12 6148 -6 377 275 61 102 chr6 76185503 76185816 -106229426 - HAL1 LINE L1 -1734 773 474 819 10 0 89 chr6 76185971 76186267 -106228975 + (TA)n Simple_repeat Simple_repeat 1 269 0 1760 200 114 12 chr6 76186354 76186774 -106228468 - MLT1C LTR MaLR 0 467 5 192 221 0 35 chr6 76188769 76188855 -106226387 + CT-rich Low_complexity Low_complexity 1 83 0 479 223 85 15 chr6 76188866 76188996 -106226246 + L2 LINE L2 3171 3309 -4 200 243 168 37 chr6 76189141 76189248 -106225994 - L2 LINE L2 -101 3212 3092 2170 177 26 26 chr6 76189725 76190282 -106224960 + MLT2A2 LTR ERVL 1 554 0 1167 193 79 0 chr6 76191289 76191543 -106223699 - MER58B DNA MER1_type -1 340 67 246 254 0 0 chr6 76191881 76191948 -106223294 + (TA)n Simple_repeat Simple_repeat 2 68 0 204 97 0 0 chr6 76192706 76192737 -106222505 + (TC)n Simple_repeat Simple_repeat 2 32 0 374 279 12 85 chr6 76192930 76193095 -106222147 + Charlie8 DNA MER1_type 1 153 -2264 252 233 109 52 chr6 76193095 76193202 -106222040 + MIR SINE MIR 51 154 -55 329 212 24 42 chr6 76193244 76193409 -106221833 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 289 342 27 0 chr6 76193419 76193530 -106221712 + MIR SINE MIR 147 260 -2 1948 132 24 0 chr6 76194030 76194319 -106220923 + AluSx SINE Alu 1 296 -16 426 86 37 0 chr6 76194319 76194400 -106220842 + (TA)n Simple_repeat Simple_repeat 1 84 0 28 48 0 0 chr6 76194419 76194461 -106220781 + AT_rich Low_complexity Low_complexity 1 42 0 218 280 27 0 chr6 76194496 76194571 -106220671 + (TATATG)n Simple_repeat Simple_repeat 5 81 0 525 286 81 49 chr6 76194636 76195140 -106220102 + L1ME LINE L1 5256 5779 -342 986 301 112 7 chr6 76196288 76196893 -106218349 + L1MC4a LINE L1 5254 5922 -1886 893 268 55 0 chr6 76196970 76197205 -106218037 - MIR SINE MIR -3 259 12 459 87 0 0 chr6 76197730 76197799 -106217443 + (TG)n Simple_repeat Simple_repeat 2 70 0 395 284 85 34 chr6 76198105 76198281 -106216961 - MIR SINE MIR -67 195 11 2502 79 0 0 chr6 76198657 76198962 -106216280 + AluSp SINE Alu 1 305 -8 300 53 0 0 chr6 76199545 76199583 -106215659 + (GA)n Simple_repeat Simple_repeat 1 38 0 25 51 0 0 chr6 76200905 76200944 -106214298 + AT_rich Low_complexity Low_complexity 1 39 0 561 293 120 0 chr6 76201042 76201284 -106213958 - L1MC4a LINE L1 -1834 5974 5704 804 62 0 0 chr6 76201882 76201978 -106213264 + AluY SINE Alu 2 97 -221 1443 92 0 15 chr6 76202209 76202405 -106212837 + AluSc SINE Alu 113 305 -4 803 231 62 4 chr6 76202589 76202831 -106212411 + MER112 DNA MER1_type 1 256 0 767 193 11 0 chr6 76203095 76203271 -106211971 + GA-rich Low_complexity Low_complexity 3 180 0 585 288 102 0 chr6 76205008 76205223 -106210019 + HAL1 LINE L1 317 553 -1954 511 328 76 66 chr6 76205461 76206052 -106209190 + L1MA4 LINE L1 3589 4185 -1961 2873 182 40 17 chr6 76206516 76207163 -106208079 + L1MA4 LINE L1 4742 5403 -743 1378 149 23 0 chr6 76207164 76207425 -106207817 + L1MA4 LINE L1 6033 6299 -1 2382 53 3 0 chr6 76207636 76207921 -106207321 + AluY SINE Alu 1 286 -25 402 21 0 0 chr6 76207921 76207968 -106207274 + (CA)n Simple_repeat Simple_repeat 2 48 0 255 152 0 0 chr6 76208420 76208466 -106206776 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 870 236 65 5 chr6 76208532 76208731 -106206511 - MER58A DNA MER1_type -12 212 2 322 214 41 10 chr6 76208753 76208851 -106206391 + L1ME LINE L1 5559 5659 -462 703 314 21 0 chr6 76209079 76209270 -106205972 + MIR SINE MIR 11 205 -57 2069 182 8 3 chr6 76209276 76209639 -106205603 - MLT1A1 LTR MaLR 0 365 1 2248 104 0 10 chr6 76209865 76210163 -106205079 - AluSx SINE Alu -17 295 1 1870 150 0 0 chr6 76210678 76210984 -106204258 - L1P LINE L1 -915 5231 4926 1768 88 0 8 chr6 76210983 76211234 -106204008 + L1P4 LINE L1 5571 5819 -344 * 1672 163 58 30 chr6 76211270 76211633 -106203609 + THE1C LTR MaLR 3 375 0 202 281 35 0 chr6 76211681 76211738 -106203504 - L2 LINE L2 0 3313 3255 251 206 15 59 chr6 76211864 76211932 -106203310 - L2 LINE L2 -4 3268 3204 363 299 0 36 chr6 76212391 76212558 -106202684 + (TA)n Simple_repeat Simple_repeat 2 162 0 2324 181 38 5 chr6 76213564 76213990 -106201252 - MLT1C LTR MaLR -2 465 26 857 193 108 47 chr6 76214933 76215073 -106200169 - MLT1E3 LTR MaLR 0 624 465 2349 155 28 35 chr6 76215073 76215530 -106199712 - MSTB2 LTR MaLR 0 457 4 857 193 108 47 chr6 76215530 76215602 -106199640 - MLT1E3 LTR MaLR -159 465 399 760 205 102 65 chr6 76215611 76215904 -106199338 - MLT1E3 LTR MaLR -316 308 5 314 255 71 10 chr6 76216185 76216283 -106198959 + MIR SINE MIR 109 212 -50 297 280 15 61 chr6 76216889 76217021 -106198221 - MIR SINE MIR -5 257 132 24 32 0 0 chr6 76217027 76217058 -106198184 + AT_rich Low_complexity Low_complexity 1 31 0 496 294 136 9 chr6 76218354 76218437 -106196805 - MIR SINE MIR 0 262 191 2217 103 7 0 chr6 76218437 76218737 -106196505 - AluSq SINE Alu -11 302 1 496 294 136 9 chr6 76218737 76218874 -106196368 - MIR SINE MIR -71 191 14 1164 204 181 38 chr6 76219038 76219195 -106196047 - MLT1F1 LTR MaLR -175 392 259 2276 101 3 13 chr6 76219195 76219511 -106195731 + AluSp SINE Alu 1 313 0 1164 204 181 38 chr6 76219511 76219696 -106195546 - MLT1F1 LTR MaLR -308 259 1 2959 202 64 5 chr6 76219962 76220540 -106194702 - LTR18B LTR ERVL -1 613 2 3990 164 77 0 chr6 76220545 76221272 -106193970 - LTR39 LTR ERV1 0 783 1 934 215 49 0 chr6 76221597 76221802 -106193440 - MER20 DNA MER1_type -4 215 1 2045 130 0 26 chr6 76222192 76222499 -106192743 - AluSx SINE Alu -13 299 1 494 265 27 20 chr6 76222520 76222667 -106192575 - MIR SINE MIR -10 252 105 1008 202 65 4 chr6 76225200 76225448 -106189794 + L1MA7 LINE L1 5954 6216 -75 949 166 31 0 chr6 76225502 76225665 -106189577 + FAM SINE Alu 1 168 -7 388 224 15 161 chr6 76225772 76225900 -106189342 + L1ME4a LINE L1 5710 5799 -322 1564 95 5 0 chr6 76225900 76226111 -106189131 + L1PA8 LINE L1 5949 6160 -12 388 224 15 161 chr6 76226111 76226187 -106189055 + L1ME4a LINE L1 5799 5884 -237 597 185 0 0 chr6 76226317 76226436 -106188806 + (TG)n Simple_repeat Simple_repeat 1 119 0 2819 268 90 44 chr6 76226660 76227740 -106187502 + L1ME3A LINE L1 3185 4396 -1750 373 164 0 0 chr6 76227740 76227807 -106187435 + L1MC1 LINE L1 6267 6333 0 2819 268 90 44 chr6 76227807 76228664 -106186578 + L1ME3A LINE L1 4396 5212 -934 632 275 25 37 chr6 76228674 76228918 -106186324 + L1MCb LINE L1 8 248 -5797 * 5261 168 117 68 chr6 76228912 76229357 -106185885 + L1MC3 LINE L1 6183 6605 -1180 1996 162 36 6 chr6 76229357 76229721 -106185521 + THE1C LTR MaLR 1 375 0 5261 168 117 68 chr6 76229721 76230161 -106185081 + L1MC3 LINE L1 6605 7022 -763 290 221 26 13 chr6 76230161 76230238 -106185004 + MLT1F1 LTR MaLR 33 110 -457 5261 168 117 68 chr6 76230238 76230802 -106184440 + L1MC3 LINE L1 7022 7784 -1 614 247 88 46 chr6 76230812 76231200 -106184042 + L1ME3A LINE L1 5208 5606 -564 1451 219 71 30 chr6 76231217 76231655 -106183587 + L1ME3A LINE L1 5706 6161 -9 761 230 11 11 chr6 76231669 76231828 -106183414 + L1MC4a LINE L1 5427 5588 -2220 1775 154 59 59 chr6 76231828 76232218 -106183024 + MLT1B LTR MaLR 1 390 0 761 230 11 11 chr6 76232218 76232232 -106183010 + L1MC4a LINE L1 5587 5600 -2208 25 31 0 0 chr6 76232347 76232379 -106182863 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr6 76232405 76232434 -106182808 + AT_rich Low_complexity Low_complexity 1 29 0 280 261 14 0 chr6 76232546 76232615 -106182627 + L1MC4a LINE L1 5596 5665 -2143 360 253 139 30 chr6 76232674 76232911 -106182331 + L1MC4a LINE L1 6076 6338 -1470 22 0 0 0 chr6 76233149 76233171 -106182071 + AT_rich Low_complexity Low_complexity 1 22 0 1609 233 47 21 chr6 76233195 76233624 -106181618 + LTR40b LTR ERVL 21 460 -2 1923 221 84 48 chr6 76233643 76234359 -106180883 + L1MC5 LINE L1 6671 7412 -549 4780 201 52 97 chr6 76234442 76235496 -106179746 - HERVL32 LTR ERVL -504 2914 1950 5238 114 5 9 chr6 76235496 76236279 -106178963 + LTR17 LTR ERV1 1 780 0 4780 201 52 97 chr6 76236279 76236759 -106178483 - HERVL32 LTR ERVL -1468 1950 1450 2160 114 37 0 chr6 76237139 76237438 -106177804 + AluSg SINE Alu 1 310 0 1621 314 13 2 chr6 76237866 76238410 -106176832 - HERVI LTR ERV1 -135 7650 7101 303 238 213 19 chr6 76238410 76238570 -106176672 + L1MC5 LINE L1 7723 7913 -48 24 0 0 0 chr6 76238789 76238813 -106176429 + AT_rich Low_complexity Low_complexity 1 24 0 448 175 10 62 chr6 76239546 76239625 -106175617 + MER53 DNA DNA 2 77 -112 375 23 0 0 chr6 76239625 76239669 -106175573 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 448 175 10 62 chr6 76239669 76239686 -106175556 + MER53 DNA DNA 77 93 -96 372 207 0 0 chr6 76239740 76239822 -106175420 + MER53 DNA DNA 108 189 0 313 230 270 34 chr6 76240202 76240350 -106174892 - MER5A DNA MER1_type -3 186 4 2387 54 0 14 chr6 76240615 76240912 -106174330 + AluY SINE Alu 1 293 -18 2709 159 71 56 chr6 76240918 76241521 -106173721 - LTR9 LTR ERV1 0 612 1 1976 171 32 4 chr6 76241716 76242218 -106173024 + LTR35 LTR ERV1 63 618 0 4908 151 33 14 chr6 76242945 76244096 -106171146 + L1MA8 LINE L1 5020 6185 -106 1685 199 6 17 chr6 76244242 76244604 -106170638 - LTR60 LTR ERV1 0 586 229 651 153 31 143 chr6 76244604 76244691 -106170551 - LTR60 LTR ERV1 -307 279 225 2368 90 0 10 chr6 76244691 76245003 -106170239 - AluSc SINE Alu 0 309 1 651 153 31 143 chr6 76245003 76245111 -106170131 - LTR60 LTR ERV1 -361 225 106 407 243 0 10 chr6 76245148 76245251 -106169991 - LTR60 LTR ERV1 -479 107 6 565 124 38 0 chr6 76245251 76245356 -106169886 + L1MA8 LINE L1 6178 6286 -5 2294 104 0 3 chr6 76245560 76245858 -106169384 + AluSq SINE Alu 1 297 -16 527 227 8 132 chr6 76246883 76247125 -106168117 + L2 LINE L2 2511 2722 -592 2532 211 74 72 chr6 76247147 76248327 -106166915 + L1MDa LINE L1 19 1458 -5082 2415 74 0 0 chr6 76248327 76248626 -106166616 + AluY SINE Alu 3 301 -10 2532 211 74 72 chr6 76248626 76249076 -106166166 + L1MDa LINE L1 1458 1906 -4634 242 29 0 0 chr6 76249225 76249259 -106165983 - L1PA6 LINE L1 -4 6150 6117 1124 269 71 35 chr6 76249731 76250154 -106165088 + MLT1J1 LTR MaLR 9 446 0 333 228 166 41 chr6 76251813 76251958 -106163284 + MIR3 SINE MIR 19 181 -27 303 264 0 82 chr6 76252373 76252483 -106162759 - L1MC4 LINE L1 -1328 6714 6614 280 315 6 25 chr6 76252494 76252656 -106162586 + (CATATA)n Simple_repeat Simple_repeat 2 160 0 217 335 99 41 chr6 76252838 76253059 -106162183 - L2 LINE L2 -525 2789 2556 2484 47 3 0 chr6 76253837 76254136 -106161106 + AluY SINE Alu 1 300 -11 406 295 25 0 chr6 76254277 76254399 -106160843 - MIR SINE MIR -66 196 72 276 186 0 0 chr6 76254547 76254606 -106160636 + CT-rich Low_complexity Low_complexity 3 61 0 24 0 0 0 chr6 76255559 76255583 -106159659 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 76256331 76256360 -106158882 + AT_rich Low_complexity Low_complexity 1 29 0 1008 155 6 23 chr6 76257357 76257531 -106157711 + FRAM SINE Alu 4 174 -2 490 258 198 42 chr6 76257538 76257755 -106157487 - MIR SINE MIR -6 256 6 180 111 0 0 chr6 76258458 76258485 -106156757 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1127 281 131 16 chr6 76258492 76258936 -106156306 - L2 LINE L2 -15 3298 2804 2124 138 3 0 chr6 76260417 76260721 -106154521 + AluSx SINE Alu 1 305 -7 22 35 0 0 chr6 76261674 76261703 -106153539 + AT_rich Low_complexity Low_complexity 1 29 0 276 391 23 8 chr6 76262350 76262483 -106152759 + MIR SINE MIR 20 154 -108 24 0 0 0 chr6 76262780 76262804 -106152438 + AT_rich Low_complexity Low_complexity 1 24 0 1720 187 164 28 chr6 76264195 76264622 -106150620 - MLT1D LTR MaLR 0 505 21 312 335 62 26 chr6 76264629 76264981 -106150261 + HAL1 LINE L1 1181 1545 -962 217 252 19 37 chr6 76265842 76265949 -106149293 + A-rich Low_complexity Low_complexity 3 107 0 1937 144 42 3 chr6 76266098 76266410 -106148832 - MER7A DNA MER2_type 0 346 25 301 328 56 17 chr6 76266425 76266605 -106148637 + L1 LINE L1 2273 2459 -3687 488 270 70 22 chr6 76266847 76267032 -106148210 + L1MEc LINE L1 37 230 -6166 421 244 176 23 chr6 76267071 76267292 -106147950 + L1MEc LINE L1 1035 1289 -4916 1223 307 101 17 chr6 76267351 76267662 -106147580 + L2 LINE L2 2419 2702 -611 2380 87 3 0 chr6 76267662 76267962 -106147280 - AluSp SINE Alu -7 306 6 1223 307 101 17 chr6 76267962 76268461 -106146781 + L2 LINE L2 2702 3309 -4 432 234 335 0 chr6 76268461 76268670 -106146572 + L1MEc LINE L1 1343 1621 -4594 2028 162 0 0 chr6 76268869 76269172 -106146070 + AluSx SINE Alu 3 305 -7 27 29 0 0 chr6 76269172 76269206 -106146036 + AT_rich Low_complexity Low_complexity 1 34 0 1180 237 28 70 chr6 76269389 76269786 -106145456 - MLT1C LTR MaLR -54 413 34 413 225 33 16 chr6 76269872 76270021 -106145221 + MER58A DNA MER1_type 36 224 0 242 148 8 246 chr6 76270159 76270281 -106144961 - LTR50 LTR ERVL -155 640 548 233 244 100 78 chr6 76270619 76270709 -106144533 + LTR8 LTR ERV1 31 122 -569 957 259 34 45 chr6 76270771 76271123 -106144119 + MER87 LTR ERV1 194 541 0 533 202 18 18 chr6 76271306 76271420 -106143822 - LTR40a LTR ERVL 0 519 406 577 302 48 48 chr6 76271547 76271862 -106143380 + L1ME LINE L1 44 358 -5712 533 243 166 8 chr6 76271974 76272209 -106143033 + L1M4 LINE L1 4146 4417 -1729 1982 130 3 10 chr6 76272237 76272536 -106142706 + AluSx SINE Alu 3 299 -13 1913 228 91 24 chr6 76272536 76272677 -106142565 + L1M4 LINE L1 4549 4679 -1467 2280 101 3 16 chr6 76272677 76272993 -106142249 + AluSx SINE Alu 1 312 0 1913 228 91 24 chr6 76272993 76273553 -106141689 + L1M4 LINE L1 4679 5301 -845 320 120 0 0 chr6 76273527 76273577 -106141665 + L1M LINE L1 5365 5414 -764 * 14573 169 11 41 chr6 76273855 76277637 -106137605 + L1PA14 LINE L1 5 3888 -3696 3311 67 30 5 chr6 76277637 76278070 -106137172 - MLT2A1 LTR ERVL 0 444 1 14573 169 11 41 chr6 76278070 76279342 -106135900 + L1PA14 LINE L1 3888 5196 -2388 6311 84 10 8 chr6 76279342 76280613 -106134629 + L1PA14 LINE L1 6313 7597 -2 35 41 0 0 chr6 76280712 76280761 -106134481 + AT_rich Low_complexity Low_complexity 1 49 0 339 25 0 0 chr6 76281115 76281155 -106134087 + (CA)n Simple_repeat Simple_repeat 1 40 0 195 291 30 97 chr6 76282290 76282424 -106132818 + L2 LINE L2 3146 3270 -2 187 321 0 16 chr6 76282842 76282911 -106132331 - L2 LINE L2 -11 3293 3194 223 273 13 26 chr6 76282921 76282998 -106132244 - MIR SINE MIR -158 104 29 23 33 0 0 chr6 76283399 76283429 -106131813 + AT_rich Low_complexity Low_complexity 1 30 0 1029 170 127 33 chr6 76284227 76284543 -106130699 - L1MA9 LINE L1 0 6312 5949 284 333 57 0 chr6 76285056 76285161 -106130081 - MIR SINE MIR -78 184 74 2089 162 19 11 chr6 76285179 76285544 -106129698 + THE1C LTR MaLR 1 368 -7 2211 103 7 7 chr6 76285760 76286070 -106129172 + AluSp SINE Alu 1 310 -3 540 250 69 0 chr6 76286622 76286766 -106128476 - MIR SINE MIR 0 262 109 417 254 41 8 chr6 76287275 76287397 -106127845 + MER58C DNA MER1_type 86 211 -4 239 333 104 14 chr6 76288126 76288270 -106126972 + L2 LINE L2 3116 3272 0 23 33 0 0 chr6 76290042 76290072 -106125170 + AT_rich Low_complexity Low_complexity 1 30 0 1331 174 9 0 chr6 76290160 76290390 -106124852 + MER46A DNA MER2_type 5 236 0 1654 181 93 21 chr6 76290439 76290654 -106124588 - MER34 LTR ERV1 0 585 387 2091 157 75 15 chr6 76290654 76291055 -106124187 + MSTB LTR MaLR 2 426 0 1654 181 93 21 chr6 76291055 76291289 -106123953 - MER34 LTR ERV1 -198 387 1 310 281 65 86 chr6 76291346 76291485 -106123757 - HAL1b LINE L1 -462 886 751 180 333 48 0 chr6 76292252 76292315 -106122927 - L2 LINE L2 -23 3290 3225 250 282 236 36 chr6 76292601 76292796 -106122446 - L2 LINE L2 -455 2859 2626 1823 196 15 28 chr6 76292814 76293207 -106122035 - MLT1B LTR MaLR -2 388 1 2188 123 0 3 chr6 76293541 76293843 -106121399 + AluSg SINE Alu 1 301 -9 318 330 32 0 chr6 76295482 76295576 -106119666 - MIR SINE MIR -165 97 1 3700 155 53 18 chr6 76295803 76296486 -106118756 - MER39 LTR ERV1 0 707 1 2467 140 19 26 chr6 76296843 76297265 -106117977 - Tigger2 DNA MER2_type 0 2718 2300 457 103 15 15 chr6 76297274 76297342 -106117900 - Tigger2 DNA MER2_type -2649 69 2 204 122 0 0 chr6 76297887 76297928 -106117314 + (A)n Simple_repeat Simple_repeat 1 41 0 27 0 0 0 chr6 76298388 76298415 -106116827 + AT_rich Low_complexity Low_complexity 1 27 0 252 332 91 16 chr6 76298518 76298705 -106116537 + MIR SINE MIR 8 208 -54 22 0 0 0 chr6 76300231 76300253 -106114989 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr6 76300333 76300368 -106114874 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 76301021 76301042 -106114200 + AT_rich Low_complexity Low_complexity 1 21 0 226 277 50 23 chr6 76301598 76301707 -106113535 + MIR SINE MIR 38 148 -78 21 0 0 0 chr6 76302747 76302768 -106112474 + AT_rich Low_complexity Low_complexity 1 21 0 225 296 94 38 chr6 76302773 76303242 -106112000 + HAL1 LINE L1 767 1261 -1246 560 247 60 0 chr6 76303283 76303433 -106111809 + HAL1 LINE L1 1494 1652 -855 494 245 238 20 chr6 76304291 76304367 -106110875 + MER5A DNA MER1_type 2 60 -129 2286 102 3 0 chr6 76304367 76304671 -106110571 + AluSx SINE Alu 1 305 -7 494 245 238 20 chr6 76304671 76304745 -106110497 + MER5A DNA MER1_type 60 185 -4 300 53 0 0 chr6 76304836 76304874 -106110368 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1113 235 123 32 chr6 76305434 76305638 -106109604 + L2 LINE L2 2445 2629 -684 923 225 57 5 chr6 76305638 76305847 -106109395 + MER58A DNA MER1_type 5 224 0 1113 235 123 32 chr6 76305847 76306348 -106108894 + L2 LINE L2 2629 3308 -5 24 32 0 0 chr6 76307572 76307603 -106107639 + AT_rich Low_complexity Low_complexity 1 31 0 1119 266 158 13 chr6 76308164 76308562 -106106680 - MER110 LTR ERV1 -6 485 30 449 164 16 125 chr6 76308749 76308877 -106106365 + MER2 DNA MER2_type 1 114 -231 562 244 117 10 chr6 76309025 76309222 -106106020 + L2 LINE L2 2160 2377 -937 807 139 22 0 chr6 76309481 76309618 -106105624 + L1MA3 LINE L1 6161 6300 -5 267 290 50 30 chr6 76310141 76310241 -106105001 + MIR3 SINE MIR 93 194 -14 2467 74 0 0 chr6 76310440 76310750 -106104492 + AluY SINE Alu 1 310 -1 237 33 0 0 chr6 76311119 76311149 -106104093 + (TC)n Simple_repeat Simple_repeat 2 31 0 1145 206 161 21 chr6 76314304 76314595 -106100647 + MER2 DNA MER2_type 14 345 0 313 315 135 64 chr6 76314595 76314691 -106100551 + L2 LINE L2 2282 2370 -944 1867 126 0 0 chr6 76314691 76314952 -106100290 - AluSx SINE Alu -12 300 40 313 315 135 64 chr6 76314952 76315306 -106099936 + L2 LINE L2 2370 2764 -550 21 0 0 0 chr6 76316010 76316031 -106099211 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 76316176 76316204 -106099038 + AT_rich Low_complexity Low_complexity 1 28 0 248 269 96 0 chr6 76316963 76317067 -106098175 + MER113 DNA MER1_type? 4 117 -404 22 0 0 0 chr6 76318355 76318377 -106096865 + AT_rich Low_complexity Low_complexity 1 22 0 269 340 39 44 chr6 76318722 76318925 -106096317 + MLT1J LTR MaLR 106 307 -204 1029 178 112 0 chr6 76319248 76319445 -106095797 - MER20 DNA MER1_type 0 219 1 219 36 0 0 chr6 76321126 76321154 -106094088 + (CA)n Simple_repeat Simple_repeat 2 29 0 34 0 0 0 chr6 76322303 76322337 -106092905 + AT_rich Low_complexity Low_complexity 1 34 0 353 152 114 0 chr6 76322628 76322707 -106092535 - L1MC4 LINE L1 -37 8005 7918 3353 180 59 13 chr6 76322752 76323503 -106091739 - L1MC4 LINE L1 -459 7583 6799 308 263 0 0 chr6 76323581 76323638 -106091604 + MER2 DNA MER2_type 282 338 -7 23 0 0 0 chr6 76323808 76323831 -106091411 + AT_rich Low_complexity Low_complexity 1 23 0 339 96 0 0 chr6 76324479 76324531 -106090711 + (CAT)n Simple_repeat Simple_repeat 2 53 0 617 318 87 38 chr6 76325112 76325666 -106089576 - L1M4 LINE L1 -3157 2989 2409 2379 247 33 14 chr6 76325678 76326260 -106088982 - MLT1E2 LTR MaLR 0 626 34 369 313 71 25 chr6 76326284 76326482 -106088760 - L1M4 LINE L1 -3737 2409 2203 757 210 88 5 chr6 76326620 76326842 -106088400 + L1MB4 LINE L1 5928 6180 0 564 282 88 11 chr6 76327252 76327433 -106087809 - MIR SINE MIR -50 212 18 2386 82 3 0 chr6 76327800 76328104 -106087138 + AluSp SINE Alu 1 305 -8 3328 225 86 28 chr6 76328387 76330237 -106085005 + L1ME2 LINE L1 4117 6062 -102 1341 101 29 0 chr6 76330682 76330891 -106084351 - L1PA13 LINE L1 0 6163 5949 1903 247 45 16 chr6 76331339 76331894 -106083348 + L1MA10 LINE L1 5754 6324 -10 1056 241 40 0 chr6 76331905 76332183 -106083059 + L1 LINE L1 4766 5054 -1092 199 303 182 0 chr6 76332307 76332406 -106082836 - MIR SINE MIR -144 118 2 866 212 34 6 chr6 76333699 76333878 -106081364 - MER5A DNA MER1_type -3 186 3 203 138 0 0 chr6 76334535 76334564 -106080678 + (CA)n Simple_repeat Simple_repeat 2 30 0 4692 103 12 3 chr6 76334592 76335280 -106079962 - L1PA13 LINE L1 -129 6034 5341 308 319 141 5 chr6 76335280 76335465 -106079777 - MIR SINE MIR -19 243 34 53 30 0 0 chr6 76335707 76335774 -106079468 + AT_rich Low_complexity Low_complexity 1 67 0 457 315 143 37 chr6 76335941 76336536 -106078706 - L1 LINE L1 -1734 4412 3749 1289 183 98 25 chr6 76336537 76336811 -106078431 - AluJb SINE Alu -8 304 11 237 284 71 19 chr6 76336852 76337007 -106078235 - L1 LINE L1 -2415 3731 3569 25 31 0 0 chr6 76337121 76337153 -106078089 + AT_rich Low_complexity Low_complexity 1 32 0 2517 109 19 0 chr6 76337310 76337678 -106077564 - THE1C LTR MaLR 0 375 1 24 67 0 0 chr6 76338239 76338284 -106076958 + AT_rich Low_complexity Low_complexity 1 45 0 499 223 106 39 chr6 76338693 76338892 -106076350 + MLT1J2 LTR MaLR 37 249 -197 423 158 8 12 chr6 76339326 76339424 -106075818 - MER46A DNA MER2_type -4 232 132 381 117 106 53 chr6 76339416 76339510 -106075732 - MER46A DNA MER2_type -41 195 97 * 7341 179 54 21 chr6 76339510 76340950 -106074292 + L1MA2 LINE L1 15 1502 -6063 * 14584 157 30 25 chr6 76340939 76344187 -106071055 + L1MA2 LINE L1 2783 6011 -1712 305 24 24 0 chr6 76344187 76344229 -106071013 + (CA)n Simple_repeat Simple_repeat 1 43 0 14584 157 30 25 chr6 76344229 76345713 -106069529 + L1MA2 LINE L1 6011 7543 -180 1904 121 7 17 chr6 76345713 76346003 -106069239 + AluSq SINE Alu 1 287 -26 14584 157 30 25 chr6 76346003 76346186 -106069056 + L1MA2 LINE L1 7543 7723 0 426 156 156 42 chr6 76346197 76346293 -106068949 - MER46A DNA MER2_type -129 107 1 259 98 0 98 chr6 76346249 76346300 -106068942 + MER46A DNA MER2_type 105 150 -86 * 744 148 0 0 chr6 76346412 76346534 -106068708 + L1PB4 LINE L1 6022 6143 -13 28 0 0 0 chr6 76346557 76346585 -106068657 + AT_rich Low_complexity Low_complexity 1 28 0 199 120 80 20 chr6 76346641 76346691 -106068551 - L3b LINE CR1 -385 1198 1146 2198 144 86 5 chr6 76346821 76347217 -106068025 - MSTA LTR MaLR 0 428 1 204 350 60 26 chr6 76347509 76347626 -106067616 + L2 LINE L2 2626 2746 -568 244 291 78 104 chr6 76347917 76348147 -106067095 + L2 LINE L2 2833 3056 -216 28 0 0 0 chr6 76348349 76348377 -106066865 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr6 76348502 76348532 -106066710 + AT_rich Low_complexity Low_complexity 1 30 0 1530 245 98 4 chr6 76349286 76349747 -106065495 + HsTC2 DNA Tc2 7 510 -1388 365 167 67 127 chr6 76349731 76349881 -106065361 + HsTC2 DNA Tc2 1255 1571 -327 * 456 210 0 0 chr6 76349882 76349963 -106065279 - L1MA4 LINE L1 -357 5943 5863 1674 154 16 13 chr6 76349985 76350303 -106064939 + L1MA4 LINE L1 5981 6299 -1 1424 153 131 91 chr6 76350310 76350662 -106064580 + MER47A DNA MER2_type 1 366 0 557 230 272 8 chr6 76350662 76350923 -106064319 + HsTC2 DNA Tc2 1568 1897 -1 1430 209 47 42 chr6 76351017 76351376 -106063866 + MLT1A1 LTR MaLR 5 365 0 4789 148 29 29 chr6 76353161 76353239 -106062003 - MER6 DNA MER2_type 0 865 788 2198 108 0 0 chr6 76353239 76353535 -106061707 - AluSq SINE Alu -16 297 2 4789 148 29 29 chr6 76353535 76354321 -106060921 - MER6 DNA MER2_type -76 789 1 21 36 0 0 chr6 76354417 76354445 -106060797 + AT_rich Low_complexity Low_complexity 1 28 0 793 298 138 37 chr6 76354479 76354970 -106060272 + L2 LINE L2 2600 3152 -161 1361 210 106 68 chr6 76354970 76355412 -106059830 + LTR40b LTR ERVL 4 462 0 793 298 138 37 chr6 76355412 76355452 -106059790 + L2 LINE L2 3152 3187 -126 311 310 96 27 chr6 76355496 76355683 -106059559 - MIR SINE MIR -46 216 17 249 259 36 7 chr6 76356383 76356522 -106058720 + (TA)n Simple_repeat Simple_repeat 1 143 0 297 0 0 0 chr6 76357440 76357473 -106057769 + (CA)n Simple_repeat Simple_repeat 2 34 0 279 200 17 0 chr6 76357889 76357949 -106057293 - HsTC2 DNA Tc2 -608 1290 1230 * 381 283 25 0 chr6 76357944 76358064 -106057178 - HsTC2 DNA Tc2 -1772 126 4 620 227 136 77 chr6 76358284 76358659 -106056583 + L1ME2 LINE L1 5768 6164 0 2120 104 0 0 chr6 76358668 76358946 -106056296 + AluSg SINE Alu 1 278 -32 225 0 0 0 chr6 76358946 76358971 -106056271 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 2077 87 3 48 chr6 76360222 76360531 -106054711 - AluSg SINE Alu -15 295 1 235 173 74 12 chr6 76360885 76360966 -106054276 + Charlie4 DNA MER1_type 1804 1889 -72 24 32 0 0 chr6 76360984 76361015 -106054227 + AT_rich Low_complexity Low_complexity 1 31 0 839 94 86 0 chr6 76363122 76363250 -106051992 - MER85 DNA T2_type 0 139 1 2146 95 25 0 chr6 76363691 76363976 -106051266 - AluSc SINE Alu -17 292 1 2776 13 0 0 chr6 76364092 76364400 -106050842 - AluYb8 SINE Alu -10 308 1 269 128 0 0 chr6 76364602 76364641 -106050601 + MLT1B LTR MaLR 3 41 -349 619 226 37 37 chr6 76365918 76366082 -106049160 + MLT1B LTR MaLR 29 192 -182 1015 216 0 0 chr6 76366119 76366318 -106048924 + MLT1B LTR MaLR 192 390 0 296 310 98 73 chr6 76366356 76366601 -106048641 + L2 LINE L2 2986 3236 -36 622 232 116 0 chr6 76366936 76367100 -106048142 + MER58A DNA MER1_type 42 224 0 262 326 107 4 chr6 76367692 76367934 -106047308 + L1ME4a LINE L1 5667 5933 -188 248 270 14 0 chr6 76368631 76368705 -106046537 + (TA)n Simple_repeat Simple_repeat 1 75 0 303 235 15 0 chr6 76368706 76368774 -106046468 - L1MCa LINE L1 -4363 2063 1995 251 183 42 0 chr6 76368774 76368845 -106046397 - L1MCa LINE L1 -4359 2067 1994 603 312 55 18 chr6 76368878 76369096 -106046146 - MIR SINE MIR -34 228 3 304 323 66 40 chr6 76369771 76369997 -106045245 - L1 LINE L1 -2252 3894 3663 2313 74 0 3 chr6 76370011 76370310 -106044932 - AluSq SINE Alu -15 298 1 676 247 151 5 chr6 76370380 76370566 -106044676 + MER58A DNA MER1_type 1 213 -11 910 184 117 0 chr6 76370574 76370822 -106044420 + MER33 DNA MER1_type 1 267 -57 571 194 30 15 chr6 76371609 76371743 -106043499 - L1M3 LINE L1 -404 5767 5632 3039 192 58 16 chr6 76372068 76372410 -106042832 + L1MB3 LINE L1 5443 5769 -414 1886 35 9 4 chr6 76372410 76372636 -106042606 + AluY SINE Alu 70 296 -15 3039 192 58 16 chr6 76372636 76372970 -106042272 + L1MB3 LINE L1 5769 6147 -36 6888 47 20 2 chr6 76373401 76374290 -106040952 + L1PA8 LINE L1 5266 6170 -2 1052 196 148 50 chr6 76374664 76374763 -106040479 + L1ME3 LINE L1 5262 5350 -814 2078 130 0 7 chr6 76374763 76375070 -106040172 + AluSx SINE Alu 3 307 -5 1052 196 148 50 chr6 76375070 76375307 -106039935 + L1ME3 LINE L1 5350 5631 -533 459 267 18 139 chr6 76375310 76375692 -106039550 - MER68 LTR ERV1 -219 343 8 684 252 136 10 chr6 76375701 76375995 -106039247 + L1ME3 LINE L1 5695 6025 -137 598 242 40 95 chr6 76377118 76377370 -106037872 + MLT1J LTR MaLR 220 457 -54 319 376 28 23 chr6 76377443 76377661 -106037581 - HERVL LTR ERVL -451 5203 4985 319 256 131 36 chr6 76377674 76377811 -106037431 - HERVL LTR ERVL -774 4990 4841 341 244 18 156 chr6 76377986 76378338 -106036904 + L1ME LINE L1 3621 3924 -2222 316 217 150 33 chr6 76378341 76378461 -106036781 - L2 LINE L2 0 3313 3180 651 273 137 15 chr6 76378584 76378948 -106036294 + L1ME LINE L1 5384 5800 -362 1473 264 70 16 chr6 76379269 76379802 -106035440 + MLT1F1 LTR MaLR 1 567 0 21 57 0 0 chr6 76379993 76380028 -106035214 + AT_rich Low_complexity Low_complexity 1 35 0 1025 280 37 7 chr6 76380313 76380609 -106034633 - L1MB7 LINE L1 -10 6672 6368 565 252 56 0 chr6 76380609 76380752 -106034490 - MER58B DNA MER1_type 0 341 191 1149 222 53 79 chr6 76380791 76381015 -106034227 - L1MB7 LINE L1 -365 6311 6083 769 154 0 22 chr6 76381015 76381151 -106034091 + FLAM_C SINE Alu 1 133 0 1149 222 53 79 chr6 76381151 76381283 -106033959 - L1MB7 LINE L1 -593 6083 5963 1598 211 19 32 chr6 76381283 76381662 -106033580 + MLT1A2 LTR MaLR 1 374 0 412 164 0 0 chr6 76381662 76381729 -106033513 + MLT1A2-int LTR MaLR 1 67 -1304 1592 190 66 26 chr6 76381760 76382107 -106033135 + MLT1A2-int LTR MaLR 351 711 -660 377 176 0 0 chr6 76382093 76382161 -106033081 + MLT1A2-int LTR MaLR 821 888 -483 * 238 253 81 11 chr6 76382215 76382302 -106032940 + MLT-int LTR MaLR 676 768 -967 1687 264 50 20 chr6 76382365 76382824 -106032418 + MLT1A2-int LTR MaLR 1263 1735 0 1259 176 114 51 chr6 76382824 76383014 -106032228 + MLT1A2 LTR MaLR 1 178 -196 201 39 0 0 chr6 76383014 76383040 -106032202 + (TC)n Simple_repeat Simple_repeat 2 27 0 1259 176 114 51 chr6 76383040 76383201 -106032041 + MLT1A2 LTR MaLR 178 374 0 7762 243 76 59 chr6 76383202 76383605 -106031637 - L1MB7 LINE L1 -703 5961 5566 2155 108 0 10 chr6 76383605 76383912 -106031330 - AluSx SINE Alu -4 308 5 7762 243 76 59 chr6 76383912 76384819 -106030423 - L1MB7 LINE L1 -1098 5566 4676 243 61 0 0 chr6 76384819 76384852 -106030390 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 7762 243 76 59 chr6 76384852 76388399 -106026843 - L1MB7 LINE L1 -1988 4676 903 26 0 6 0 chr6 76388428 76388483 -106026759 + AT_rich Low_complexity Low_complexity 1 26 0 231 322 38 80 chr6 76388527 76388791 -106026451 - L1MB7 LINE L1 -5667 875 623 226 295 60 51 chr6 76388986 76389203 -106026039 - L1MB7 LINE L1 -6307 235 17 2202 295 95 28 chr6 76389320 76389740 -106025502 - L2 LINE L2 0 3313 2923 1679 240 107 31 chr6 76389740 76390291 -106024951 - MLT1E LTR MaLR 0 593 1 2202 295 95 28 chr6 76390291 76391074 -106024168 - L2 LINE L2 -390 2923 2030 305 192 154 0 chr6 76391656 76391734 -106023508 - MIR SINE MIR -89 173 84 1423 189 189 3 chr6 76391773 76392107 -106023135 + MSTD LTR MaLR 1 396 0 482 265 114 14 chr6 76392449 76392660 -106022582 + L1ME2 LINE L1 5695 5926 -238 2505 87 25 14 chr6 76392716 76393074 -106022168 + THE1B LTR MaLR 1 362 -2 595 240 0 8 chr6 76393497 76393618 -106021624 + FRAM SINE Alu 1 120 -56 792 103 0 0 chr6 76393634 76393750 -106021492 + (GGGA)n Simple_repeat Simple_repeat 1 116 0 3320 210 73 24 chr6 76394087 76394948 -106020294 + Charlie1a DNA MER1_type 12 914 -541 302 236 40 81 chr6 76395429 76395577 -106019665 + MER5B DNA MER1_type 1 142 -36 1906 132 28 11 chr6 76395581 76395868 -106019374 + AluSx SINE Alu 4 295 -17 2021 106 27 17 chr6 76395873 76396166 -106019076 + AluSx SINE Alu 3 298 -14 200 348 82 32 chr6 76396309 76396467 -106018775 + MIR SINE MIR 63 228 -34 406 284 26 0 chr6 76396952 76397068 -106018174 + MER105 DNA DNA 19 137 -67 28 79 0 0 chr6 76397450 76397513 -106017729 + AT_rich Low_complexity Low_complexity 1 63 0 2231 98 0 0 chr6 76397611 76397907 -106017335 + AluSg SINE Alu 1 296 -14 3360 109 90 38 chr6 76398539 76399151 -106016091 + LTR9B LTR ERV1 1 644 0 228 339 69 35 chr6 76399456 76399823 -106015419 - L2 LINE L2 -177 3095 2692 248 250 102 36 chr6 76400471 76400667 -106014575 + L1MC/D LINE L1 4498 4706 -1440 1143 186 215 12 chr6 76401159 76401406 -106013836 + AluSg1 SINE Alu 1 297 -12 241 300 50 19 chr6 76401622 76401782 -106013460 + L1MC/D LINE L1 5711 5875 -1933 1808 142 31 7 chr6 76402083 76402371 -106012871 - AluJb SINE Alu -15 297 3 245 250 18 0 chr6 76402474 76402530 -106012712 - MER20B DNA MER1_type -725 58 2 24 0 0 0 chr6 76402567 76402591 -106012651 + AT_rich Low_complexity Low_complexity 1 24 0 1112 291 150 41 chr6 76403041 76403143 -106012099 + L2 LINE L2 1285 1374 -1940 786 198 107 5 chr6 76403143 76403340 -106011902 + MER20B DNA MER1_type 3 219 0 1112 291 150 41 chr6 76403340 76404436 -106010806 + L2 LINE L2 1374 2614 -700 538 365 117 7 chr6 76404437 76404933 -106010309 + L2 LINE L2 2751 3308 -5 21 36 0 0 chr6 76405119 76405147 -106010095 + AT_rich Low_complexity Low_complexity 1 28 0 1613 122 0 4 chr6 76406170 76406399 -106008843 + AluSx SINE Alu 1 228 -84 512 101 0 0 chr6 76406834 76406913 -106008329 - L1PA5 LINE L1 -6 6148 6070 686 279 88 14 chr6 76407560 76407775 -106007467 + MIR SINE MIR 31 261 -1 222 261 0 0 chr6 76407787 76407833 -106007409 + L2 LINE L2 3261 3306 -7 1873 135 3 14 chr6 76407960 76408248 -106006994 + AluSx SINE Alu 12 296 -16 191 0 103 0 chr6 76408255 76408284 -106006958 + A-rich Low_complexity Low_complexity 5 36 0 573 294 27 8 chr6 76408462 76408636 -106006606 - MIR3 SINE MIR -22 186 2 953 206 22 5 chr6 76409870 76410054 -106005188 - MER5A DNA MER1_type -1 188 2 444 279 73 36 chr6 76410092 76410257 -106004985 + MER5B DNA MER1_type 8 178 0 395 206 33 11 chr6 76410408 76410500 -106004742 - L1ME1 LINE L1 -97 6069 5976 2923 138 42 2 chr6 76410568 76411045 -106004197 + MER41E LTR ERV1 17 512 0 657 177 85 6 chr6 76411045 76411209 -106004033 - L1ME1 LINE L1 -186 5980 5804 241 184 119 18 chr6 76411296 76411405 -106003837 + Charlie1a DNA MER1_type 1212 1331 -124 334 212 119 34 chr6 76411605 76411723 -106003519 - Charlie1a DNA MER1_type 0 1455 1328 315 286 86 0 chr6 76411734 76411839 -106003403 + MIR SINE MIR 149 262 0 356 231 143 0 chr6 76411919 76412010 -106003232 - MER5B DNA MER1_type -74 104 1 319 133 100 17 chr6 76412098 76412158 -106003084 - MER5A DNA MER1_type -84 105 41 1648 146 50 36 chr6 76412426 76412728 -106002514 - AluJb SINE Alu -6 306 1 4720 194 64 19 chr6 76412757 76413913 -106001329 + Charlie1a DNA MER1_type 1 1208 -247 1125 179 123 75 chr6 76416108 76416537 -105998705 + LTR7 LTR ERV1 1 450 0 3687 133 39 22 chr6 76417202 76417351 -105997891 + LTR62 LTR ERVK 1 146 -573 306 0 0 0 chr6 76417351 76417385 -105997857 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3375 50 5 2 chr6 76417385 76417804 -105997438 - L1PA5 LINE L1 -18 6136 5717 3687 133 39 22 chr6 76417804 76418329 -105996913 + LTR62 LTR ERVK 145 687 -32 28 0 0 0 chr6 76419115 76419143 -105996099 + AT_rich Low_complexity Low_complexity 1 28 0 268 391 23 8 chr6 76419436 76419569 -105995673 - MIR SINE MIR -108 154 20 22 35 0 0 chr6 76420216 76420245 -105994997 + AT_rich Low_complexity Low_complexity 1 29 0 2007 127 10 3 chr6 76421198 76421497 -105993745 - AluSx SINE Alu -7 305 5 255 262 0 9 chr6 76421890 76421997 -105993245 + (TA)n Simple_repeat Simple_repeat 1 106 0 33791 61 6 9 chr6 76422404 76428237 -105987005 + L1PA2 LINE L1 633 6469 -1 225 296 41 20 chr6 76428276 76428374 -105986868 - MIR3 SINE MIR -31 177 78 341 211 13 26 chr6 76478543 76478619 -105936623 - LTR39 LTR ERV1 -708 75 1 365 225 114 145 chr6 76478714 76478941 -105936301 - LTR33 LTR ERVL -3 518 299 617 217 8 8 chr6 76479034 76479163 -105936079 - LTR33 LTR ERVL -390 131 3 3661 127 14 25 chr6 76480002 76480595 -105934647 + LTR59 LTR ERV1 1 586 -11 393 22 0 0 chr6 76480648 76480694 -105934548 + (CA)n Simple_repeat Simple_repeat 1 46 0 1732 246 43 16 chr6 76481162 76481601 -105933641 + MER69 DNA AcHobo 1 451 -2075 686 161 115 11 chr6 76481635 76481809 -105933433 + MER69 DNA AcHobo 2331 2522 -4 204 40 0 0 chr6 76484131 76484156 -105931086 + (T)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr6 76484617 76484640 -105930602 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr6 76485575 76485598 -105929644 + AT_rich Low_complexity Low_complexity 1 23 0 296 208 117 100 chr6 76486246 76486366 -105928876 - L1M4 LINE L1 -1304 4842 4726 1544 198 7 100 chr6 76486366 76486590 -105928652 + MLT1B LTR MaLR 1 168 -222 2147 132 6 0 chr6 76486590 76486901 -105928341 + AluSq SINE Alu 1 313 0 1544 198 7 100 chr6 76486901 76487106 -105928136 + MLT1B LTR MaLR 168 390 0 296 208 117 100 chr6 76487106 76487216 -105928026 - L1M4 LINE L1 -1420 4726 4608 1908 171 31 6 chr6 76487312 76487668 -105927574 + MLT1A1 LTR MaLR 1 365 0 45 0 0 0 chr6 76487804 76487849 -105927393 + AT_rich Low_complexity Low_complexity 1 45 0 444 82 0 0 chr6 76488011 76488072 -105927170 + (TA)n Simple_repeat Simple_repeat 2 62 0 363 266 97 14 chr6 76488288 76488485 -105926757 - L1M4 LINE L1 -2863 3283 3076 683 272 15 48 chr6 76488581 76488853 -105926389 - L1ME3 LINE L1 0 6162 5900 * 1020 253 133 34 chr6 76488838 76489395 -105925847 + L1ME3A LINE L1 5351 5962 -208 2257 103 100 0 chr6 76489552 76489893 -105925349 - THE1C LTR MaLR 0 375 1 365 297 119 12 chr6 76490061 76490472 -105924770 + L1MEc LINE L1 1945 2399 -3997 24 0 0 0 chr6 76490531 76490555 -105924687 + AT_rich Low_complexity Low_complexity 1 24 0 377 263 103 53 chr6 76490620 76490959 -105924283 + L1MEc LINE L1 2403 2758 -3457 * 579 268 43 10 chr6 76490955 76491227 -105924015 - L1MDa LINE L1 -5257 813 534 21 71 0 0 chr6 76491824 76491866 -105923376 + AT_rich Low_complexity Low_complexity 1 42 0 232 314 48 29 chr6 76492674 76492779 -105922463 - MIR3 SINE MIR -7 201 95 220 357 21 29 chr6 76492846 76492986 -105922256 - L2 LINE L2 -262 3010 2872 245 366 92 8 chr6 76492994 76493125 -105922117 - MER5A DNA MER1_type -1 188 47 210 341 23 23 chr6 76493225 76493313 -105921929 - L2 LINE L2 -529 2785 2698 186 71 0 0 chr6 76493573 76493601 -105921641 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 1588 170 28 31 chr6 76493601 76493889 -105921353 - AluJb SINE Alu -25 287 1 273 315 88 52 chr6 76493967 76494275 -105920967 - L2 LINE L2 -961 2353 2035 23 0 0 0 chr6 76495080 76495103 -105920139 + AT_rich Low_complexity Low_complexity 1 23 0 398 372 64 39 chr6 76495201 76495637 -105919605 - L3 LINE CR1 -1062 515 69 539 257 164 7 chr6 76497023 76497175 -105918067 - LTR67 LTR ERVL -35 522 347 801 127 0 0 chr6 76498296 76498414 -105916828 + FLAM_C SINE Alu 1 118 -15 32 0 0 0 chr6 76498414 76498446 -105916796 + AT_rich Low_complexity Low_complexity 1 32 0 1718 186 62 0 chr6 76498469 76498792 -105916450 - MER2 DNA MER2_type -1 343 1 408 299 68 41 chr6 76501666 76501887 -105913355 - MIR SINE MIR -24 238 12 248 330 34 57 chr6 76503418 76503594 -105911648 - MIR SINE MIR -59 203 32 955 209 29 2 chr6 76503615 76503837 -105911405 - MIR SINE MIR -15 247 18 4730 180 43 22 chr6 76505497 76506704 -105908538 - L1MA9 LINE L1 -38 6274 5039 817 203 33 11 chr6 76507078 76507260 -105907982 - MER5A DNA MER1_type -3 186 1 708 193 22 0 chr6 76507559 76507694 -105907548 - MIR SINE MIR -122 140 3 23 0 0 0 chr6 76509681 76509704 -105905538 + AT_rich Low_complexity Low_complexity 1 23 0 449 280 28 0 chr6 76509771 76509878 -105905364 - MIR3 SINE MIR -12 196 87 2024 120 7 7 chr6 76510312 76510612 -105904630 - AluSx SINE Alu -3 309 10 956 256 4 8 chr6 76511485 76511729 -105903513 + AluJo SINE Alu 1 224 -88 1243 323 54 28 chr6 76512355 76512888 -105902354 - MLT1K LTR MaLR 0 588 42 2287 98 7 7 chr6 76513050 76513355 -105901887 + AluSq SINE Alu 5 309 -4 2404 87 0 0 chr6 76514560 76514859 -105900383 - AluY SINE Alu -12 299 1 258 308 53 15 chr6 76515269 76515402 -105899840 + L1ME LINE L1 5636 5773 -348 2367 42 0 0 chr6 76515987 76516273 -105898969 + L1PA4 LINE L1 5867 6152 -3 801 291 98 49 chr6 76516408 76517328 -105897914 - L1M4 LINE L1 -1037 5109 4145 654 312 93 33 chr6 76517596 76518425 -105896817 - L1MEc LINE L1 -4578 1818 940 304 295 89 0 chr6 76518791 76518903 -105896339 + L2 LINE L2 3192 3313 0 258 370 9 9 chr6 76519035 76519143 -105896099 - MIR SINE MIR -1 261 154 1242 307 26 54 chr6 76519955 76520454 -105894788 + L2 LINE L2 2829 3313 0 22 0 0 0 chr6 76522095 76522117 -105893125 + AT_rich Low_complexity Low_complexity 1 22 0 995 327 46 26 chr6 76523183 76523747 -105891495 + L2 LINE L2 2470 3085 -228 261 0 0 0 chr6 76523793 76523822 -105891420 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1566 245 132 11 chr6 76524406 76524876 -105890366 + MLT1H LTR MaLR 21 547 -2 1748 184 55 9 chr6 76524996 76525343 -105889899 - MLT1A1 LTR MaLR 0 365 3 211 302 0 16 chr6 76526231 76526294 -105888948 + MIR SINE MIR 5 66 -196 198 398 11 11 chr6 76527034 76527122 -105888120 - L2 LINE L2 -47 3225 3138 258 271 57 21 chr6 76528141 76528281 -105886961 - L1ME4a LINE L1 -6 6115 5971 335 295 119 46 chr6 76528291 76528576 -105886666 - L1ME4a LINE L1 -516 5605 5300 290 229 0 26 chr6 76530949 76531102 -105884140 + (TA)n Simple_repeat Simple_repeat 2 150 0 26 0 0 0 chr6 76532388 76532414 -105882828 + GC_rich Low_complexity Low_complexity 1 26 0 331 299 147 27 chr6 76532470 76532694 -105882548 + L1M2 LINE L1 718 968 -5881 253 245 0 0 chr6 76534299 76534352 -105880890 - L2 LINE L2 -300 2972 2920 21 0 0 0 chr6 76534739 76534760 -105880482 + AT_rich Low_complexity Low_complexity 1 21 0 641 345 45 33 chr6 76535562 76536147 -105879095 - L2 LINE L2 -226 3046 2402 2358 91 0 7 chr6 76536955 76537262 -105877980 - AluSx SINE Alu -7 305 1 220 27 54 0 chr6 76537275 76537312 -105877930 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1460 327 98 24 chr6 76538239 76538832 -105876410 + MER115 DNA AcHobo 34 670 -23 543 126 72 37 chr6 76538830 76538943 -105876299 - MSTD LTR MaLR -252 113 1 * 2560 66 0 0 chr6 76539615 76539918 -105875324 + AluY SINE Alu 1 303 -8 1697 317 147 17 chr6 76540086 76541316 -105873926 - L2 LINE L2 -8 3264 1862 27 0 0 0 chr6 76542784 76542811 -105872431 + AT_rich Low_complexity Low_complexity 1 27 0 2024 109 48 20 chr6 76542884 76543178 -105872064 + AluSg SINE Alu 1 302 -8 315 67 0 0 chr6 76543185 76543230 -105872012 + L1MB3 LINE L1 5324 5368 -812 4147 159 40 24 chr6 76543330 76543459 -105871783 + L1MB3 LINE L1 5339 5464 -719 2080 99 3 11 chr6 76543459 76543785 -105871457 - AluSc SINE Alu 0 324 1 4147 159 40 24 chr6 76543785 76543933 -105871309 + L1MB3 LINE L1 5464 5608 -575 189 0 0 0 chr6 76543933 76543954 -105871288 + (TATTG)n Simple_repeat Simple_repeat 5 25 0 4147 159 40 24 chr6 76543954 76544504 -105870738 + L1MB3 LINE L1 5608 6181 -2 350 313 60 33 chr6 76546323 76546505 -105868737 - MER5A DNA MER1_type -1 188 2 839 149 21 0 chr6 76546645 76546786 -105868456 - L1MB1 LINE L1 -5 6163 6020 367 309 107 6 chr6 76548318 76548496 -105866746 - L2 LINE L2 -276 3037 2842 2329 89 0 16 chr6 76549325 76549628 -105865614 + AluSx SINE Alu 1 298 -14 2253 97 0 23 chr6 76550126 76550436 -105864806 - AluSx SINE Alu -9 303 1 1369 223 62 37 chr6 76550624 76551112 -105864130 - L1MA9 LINE L1 -21 6291 5792 * 2759 199 9 6 chr6 76551110 76551883 -105863359 + L1MA9 LINE L1 4996 5772 -540 616 261 101 25 chr6 76552683 76552921 -105862321 - L1ME3 LINE L1 -8 6154 5899 1902 132 61 9 chr6 76552923 76553249 -105861993 - MER61A LTR ERV1 0 343 1 2475 100 13 3 chr6 76553249 76553791 -105861451 - MER61A-int LTR ERV1 0 5217 4628 1752 112 60 11 chr6 76553800 76554068 -105861174 + AluSx SINE Alu 20 300 -12 181 298 83 0 chr6 76554620 76554704 -105860538 + L2 LINE L2 2116 2206 -1108 257 250 0 0 chr6 76554704 76554756 -105860486 + LTR30 LTR ERV1 1 52 -670 1330 112 225 9 chr6 76554756 76555123 -105860119 + LTR12 LTR ERV1 57 2021 -417 309 265 10 0 chr6 76555123 76555221 -105860021 + LTR30 LTR ERV1 544 642 -80 1605 99 36 0 chr6 76555222 76555445 -105859797 + LTR12 LTR ERV1 480 710 -4 420 276 171 47 chr6 76555445 76555808 -105859434 + L2 LINE L2 2199 2606 -708 922 104 55 0 chr6 76555830 76555994 -105859248 + MER53 DNA DNA 7 179 -10 345 132 0 29 chr6 76556067 76556135 -105859107 - MER61A LTR ERV1 -277 66 1 18602 91 22 9 chr6 76556135 76558724 -105856518 - MER61A-int LTR ERV1 0 5217 2596 5408 59 44 17 chr6 76558724 76559470 -105855772 + MER4E LTR ERV1 1 766 0 2604 101 138 3 chr6 76559470 76559946 -105855296 - MER61A-int LTR ERV1 -3311 1906 1320 * 2949 182 52 30 chr6 76559931 76560668 -105854574 - MER61A-int LTR ERV1 -4430 787 1 1819 129 71 21 chr6 76560668 76560994 -105854248 - MER61A LTR ERV1 0 343 2 1164 243 58 40 chr6 76561001 76561401 -105853841 - L1ME3 LINE L1 -263 5899 5493 1394 244 53 13 chr6 76561472 76561528 -105853714 - L1ME LINE L1 -538 5632 5580 2891 13 0 0 chr6 76561528 76561844 -105853398 + AluYb8 SINE Alu 1 316 -2 1394 244 53 13 chr6 76561844 76562583 -105852659 - L1ME LINE L1 -590 5580 4817 721 239 70 33 chr6 76562636 76562731 -105852511 - L1ME LINE L1 -1428 4718 4628 270 0 0 0 chr6 76562731 76562761 -105852481 + (CA)n Simple_repeat Simple_repeat 2 31 0 721 239 70 33 chr6 76562761 76562937 -105852305 - L1ME LINE L1 -1518 4628 4437 467 250 31 8 chr6 76563979 76564107 -105851135 - MIR SINE MIR 0 262 132 1959 128 40 7 chr6 76564428 76564725 -105850517 - AluSx SINE Alu -5 307 1 21 36 0 0 chr6 76564818 76564846 -105850396 + AT_rich Low_complexity Low_complexity 1 28 0 223 248 23 15 chr6 76564939 76565018 -105850224 + CT-rich Low_complexity Low_complexity 1 79 0 2849 175 6 15 chr6 76567850 76568325 -105846917 - HERVL18 LTR ERVL -1188 4859 4389 2738 226 43 64 chr6 76568325 76569202 -105846040 - HERVL18 LTR ERVL -2471 3576 2718 576 174 38 22 chr6 76569171 76569361 -105845881 - HERVL18 LTR ERVL -3565 2482 2228 * 6039 208 21 3 chr6 76569347 76570487 -105844755 - HERVL18 LTR ERVL -4886 1161 1 2595 145 150 26 chr6 76570524 76571063 -105844179 - LTR18B LTR ERVL -8 606 1 320 222 111 0 chr6 76571704 76571785 -105843457 + MER117 DNA MER1_type 42 131 -66 2376 59 0 59 chr6 76572439 76572761 -105842481 - AluSx SINE Alu -9 303 1 338 324 18 9 chr6 76573142 76573253 -105841989 - L2 LINE L2 0 3272 3161 22 35 0 0 chr6 76574270 76574299 -105840943 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 76574705 76574727 -105840515 + AT_rich Low_complexity Low_complexity 1 22 0 201 362 160 0 chr6 76575270 76575364 -105839878 + L2 LINE L2 3156 3264 -8 338 300 93 7 chr6 76575645 76575785 -105839457 - MIR SINE MIR -83 179 28 233 332 40 15 chr6 76577031 76577233 -105838009 + L2 LINE L2 1527 1733 -1581 1935 152 0 10 chr6 76578137 76578440 -105836802 + AluJb SINE Alu 1 300 -12 240 300 133 44 chr6 76578811 76578991 -105836251 - L2 LINE L2 -215 3057 2862 2439 66 7 0 chr6 76581266 76581567 -105833675 - AluY SINE Alu -8 303 1 542 103 0 0 chr6 76581603 76581681 -105833561 + L1PA10 LINE L1 6087 6164 -4 362 354 41 0 chr6 76582219 76582366 -105832876 + MIR3 SINE MIR 33 185 -23 1424 297 61 51 chr6 76582758 76583053 -105832189 - L2 LINE L2 -1 3312 3021 1471 117 36 5 chr6 76583053 76583276 -105831966 + MER30 DNA MER1_type 1 230 0 1424 297 61 51 chr6 76583276 76583745 -105831497 - L2 LINE L2 -292 3021 2539 1615 179 0 30 chr6 76583745 76584047 -105831195 + AluJb SINE Alu 1 293 -19 1424 297 61 51 chr6 76584047 76584331 -105830911 - L2 LINE L2 -774 2539 2259 304 252 39 39 chr6 76585400 76585527 -105829715 - L1ME4a LINE L1 -8 6113 5987 319 272 0 22 chr6 76586228 76586320 -105828922 - L1MC4 LINE L1 -1339 6703 6614 476 326 0 0 chr6 76586433 76586611 -105828631 + (TA)n Simple_repeat Simple_repeat 2 179 0 268 210 0 34 chr6 76586625 76586744 -105828498 + (TATATG)n Simple_repeat Simple_repeat 1 115 0 29 0 0 0 chr6 76587019 76587048 -105828194 + AT_rich Low_complexity Low_complexity 1 29 0 30 59 0 0 chr6 76587203 76587254 -105827988 + AT_rich Low_complexity Low_complexity 1 51 0 2321 109 0 0 chr6 76587361 76587664 -105827578 - AluSx SINE Alu -9 303 1 319 156 121 43 chr6 76587911 76588003 -105827239 - MLT1G1 LTR MaLR 0 595 407 5670 236 70 24 chr6 76588004 76588986 -105826256 + L1M4 LINE L1 45 980 -5666 11169 42 1 0 chr6 76588986 76591114 -105824128 - L1PA5 LINE L1 -2 6152 4011 5670 236 70 24 chr6 76591114 76592166 -105823076 + L1M4 LINE L1 980 2176 -4470 206 289 0 0 chr6 76593336 76593388 -105821854 - L2 LINE L2 0 3313 3262 30 97 0 0 chr6 76593945 76594038 -105821204 + AT_rich Low_complexity Low_complexity 1 93 0 234 0 0 0 chr6 76594040 76594066 -105821176 + (CA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr6 76594693 76594716 -105820526 + AT_rich Low_complexity Low_complexity 1 23 0 1917 102 72 0 chr6 76595421 76595712 -105819530 + AluY SINE Alu 1 310 0 191 260 80 0 chr6 76596347 76596397 -105818845 + L2 LINE L2 3250 3303 -10 27 0 0 0 chr6 76596525 76596552 -105818690 + AT_rich Low_complexity Low_complexity 1 27 0 193 257 55 92 chr6 76598292 76598401 -105816841 - L2 LINE L2 0 3272 3168 824 57 0 0 chr6 76600602 76600708 -105814534 - L1PA11 LINE L1 -1 6173 6068 260 236 79 34 chr6 76602057 76602146 -105813096 - L2 LINE L2 -11 3261 3169 626 313 43 0 chr6 76604190 76604401 -105810841 - MIR SINE MIR -3 259 40 272 203 109 0 chr6 76604551 76604615 -105810627 - MIR SINE MIR -114 148 78 * 285 293 60 17 chr6 76604612 76604728 -105810514 + MIR SINE MIR 18 138 -124 404 301 63 28 chr6 76605167 76605310 -105809932 - L2 LINE L2 0 3272 3125 235 281 62 25 chr6 76606053 76606242 -105809000 + MIR SINE MIR 3 251 -11 2136 117 0 3 chr6 76606575 76606873 -105808369 - AluSx SINE Alu -14 298 2 5754 161 20 14 chr6 76607125 76607617 -105807625 - L1MA5 LINE L1 -8 6292 5805 330 26 0 0 chr6 76607617 76607656 -105807586 + (TG)n Simple_repeat Simple_repeat 2 40 0 5754 161 20 14 chr6 76607656 76608650 -105806592 - L1MA5 LINE L1 -495 5805 4786 412 287 75 55 chr6 76608774 76609186 -105806056 + L2 LINE L2 2708 3181 -132 1030 214 13 39 chr6 76611744 76611973 -105803269 + MER58A DNA MER1_type 2 224 0 21 36 0 0 chr6 76612122 76612150 -105803092 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr6 76614391 76614435 -105800807 + AT_rich Low_complexity Low_complexity 1 44 0 378 0 0 0 chr6 76615559 76615601 -105799641 + (CA)n Simple_repeat Simple_repeat 1 42 0 556 322 84 0 chr6 76616052 76616254 -105798988 + MIR SINE MIR 30 248 -14 246 88 0 0 chr6 76616346 76616380 -105798862 - U2 snRNA snRNA -153 35 2 540 250 77 77 chr6 76616546 76616806 -105798436 - MIR SINE MIR 0 262 3 25 0 0 0 chr6 76617304 76617329 -105797913 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 76617362 76617384 -105797858 + AT_rich Low_complexity Low_complexity 1 22 0 325 333 47 16 chr6 76619141 76619270 -105795972 + L2 LINE L2 3132 3264 -8 687 308 160 22 chr6 76620295 76620407 -105794835 + L3 LINE CR1 904 999 -578 396 0 0 0 chr6 76620407 76620451 -105794791 + (TG)n Simple_repeat Simple_repeat 2 45 0 204 40 0 0 chr6 76620452 76620477 -105794765 + (GA)n Simple_repeat Simple_repeat 2 26 0 687 308 160 22 chr6 76620477 76620768 -105794474 + L3 LINE CR1 998 1365 -212 195 129 0 0 chr6 76620985 76621016 -105794226 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 206 229 16 33 chr6 76624226 76624287 -105790955 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 212 292 94 42 chr6 76624352 76624448 -105790794 + MIR SINE MIR 1 101 -161 328 301 113 0 chr6 76624579 76624712 -105790530 + MIR SINE MIR 6 153 -109 2467 39 10 16 chr6 76625508 76625815 -105789427 - AluY SINE Alu -6 305 1 251 313 23 11 chr6 76626581 76626757 -105788485 + (TA)n Simple_repeat Simple_repeat 1 178 0 273 196 0 0 chr6 76626984 76627035 -105788207 + L2 LINE L2 3222 3272 0 279 309 0 0 chr6 76627399 76627483 -105787759 - MIR SINE MIR -77 185 102 721 294 155 2 chr6 76628154 76628606 -105786636 - LTR33 LTR ERVL 0 521 1 5206 52 14 9 chr6 76631022 76631676 -105783566 + SVA Other Other 730 1386 0 433 281 82 0 chr6 76633863 76633998 -105781244 + MIR SINE MIR 48 193 -69 508 284 28 7 chr6 76634175 76634316 -105780926 - MLT1H LTR MaLR 0 549 406 1185 201 107 29 chr6 76634362 76634670 -105780572 - MER2 DNA MER2_type -13 332 1 1419 244 14 22 chr6 76634693 76635050 -105780192 - MLT1H LTR MaLR -195 354 1 24 0 0 0 chr6 76635054 76635078 -105780164 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr6 76636016 76636039 -105779203 + (GA)n Simple_repeat Simple_repeat 2 24 0 300 299 10 0 chr6 76636085 76636182 -105779060 - L1ME LINE L1 -284 5837 5740 300 332 52 26 chr6 76636212 76636405 -105778837 - L2 LINE L2 -1410 1904 1707 843 326 116 22 chr6 76636638 76637351 -105777891 + L2 LINE L2 2514 3294 -19 28 29 0 0 chr6 76637559 76637594 -105777648 + AT_rich Low_complexity Low_complexity 1 35 0 2377 82 0 3 chr6 76639691 76639997 -105775245 - AluY SINE Alu -6 305 1 642 345 79 42 chr6 76640428 76640831 -105774411 - L3 LINE CR1 -722 855 438 264 287 200 41 chr6 76640875 76641070 -105774172 - L3 LINE CR1 -1249 328 103 245 339 217 19 chr6 76641279 76641601 -105773641 - L2 LINE L2 0 3272 2887 4773 38 0 12 chr6 76641878 76642464 -105772778 + L1PA4 LINE L1 5573 6151 -4 213 219 0 0 chr6 76643098 76643139 -105772103 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 246 143 0 0 chr6 76643139 76643188 -105772054 + (GA)n Simple_repeat Simple_repeat 2 50 0 742 318 75 43 chr6 76643356 76644008 -105771234 + L1MC4a LINE L1 2864 3536 -2610 26 30 0 0 chr6 76644108 76644141 -105771101 + AT_rich Low_complexity Low_complexity 1 33 0 274 279 124 29 chr6 76644144 76644441 -105770801 + L1MC4a LINE L1 3721 4050 -2096 260 300 94 53 chr6 76644626 76645327 -105769915 + L1MC4a LINE L1 4298 5027 -1119 399 271 71 49 chr6 76645538 76645914 -105769328 + L1MC4a LINE L1 5272 5670 -540 293 350 36 5 chr6 76646109 76646303 -105768939 + L1MC4a LINE L1 5711 5910 -1898 37 102 0 0 chr6 76646520 76646648 -105768594 + AT_rich Low_complexity Low_complexity 1 128 0 23 68 0 0 chr6 76646759 76646803 -105768439 + AT_rich Low_complexity Low_complexity 1 44 0 546 135 0 0 chr6 76647069 76647158 -105768084 - AluSg/x SINE Alu -5 307 219 1910 106 4 0 chr6 76647158 76647423 -105767819 - AluSg SINE Alu -44 266 1 2532 265 87 36 chr6 76647510 76647575 -105767667 - L1M4 LINE L1 -1453 4693 4633 2288 71 0 0 chr6 76647575 76647916 -105767326 + AluY SINE Alu 1 341 0 2532 265 87 36 chr6 76647916 76649005 -105766237 - L1M4 LINE L1 -1513 4633 3480 591 318 70 33 chr6 76649281 76649768 -105765474 - HAL1b LINE L1 -440 908 404 372 94 0 0 chr6 76651106 76651159 -105764083 + (TA)n Simple_repeat Simple_repeat 2 54 0 435 335 39 28 chr6 76651280 76651462 -105763780 + MER5A DNA MER1_type 1 184 -5 890 149 14 0 chr6 76651779 76651799 -105763443 - AluJb SINE Alu -7 305 287 216 0 0 0 chr6 76651799 76651823 -105763419 + (TTGTG)n Simple_repeat Simple_repeat 2 25 0 890 149 14 0 chr6 76651823 76651950 -105763292 - AluJb SINE Alu -25 287 156 573 324 6 60 chr6 76653584 76653933 -105761309 + L2 LINE L2 2170 2499 -815 1264 82 71 0 chr6 76654371 76654553 -105760689 - MER30 DNA MER1_type -35 195 1 600 282 139 5 chr6 76654612 76654821 -105760421 + MIR SINE MIR 18 254 -8 1841 202 84 76 chr6 76655012 76655773 -105759469 - L1MC5 LINE L1 -52 7909 7143 5711 129 21 15 chr6 76655774 76657325 -105757917 - L1PA15 LINE L1 -6 6159 4597 7717 204 6 5 chr6 76657372 76658999 -105756243 - L1PA15 LINE L1 -1527 4619 2992 343 226 28 0 chr6 76661803 76661909 -105753333 + (TATG)n Simple_repeat Simple_repeat 2 110 0 240 35 0 0 chr6 76661911 76661940 -105753302 + (GA)n Simple_repeat Simple_repeat 2 30 0 258 147 23 112 chr6 76662219 76662299 -105752943 + AluSg/x SINE Alu 123 185 -117 1704 262 66 25 chr6 76662319 76663117 -105752125 + L1M4 LINE L1 1071 1901 -4641 216 0 0 0 chr6 76663159 76663183 -105752059 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1923 147 10 10 chr6 76663247 76663559 -105751683 + AluSx SINE Alu 1 312 0 319 289 111 11 chr6 76663622 76663802 -105751440 - L1MC4 LINE L1 -1 8041 7844 1908 107 96 0 chr6 76663836 76664107 -105751135 - AluSg SINE Alu -13 297 1 1725 168 14 21 chr6 76664136 76664427 -105750815 + AluJb SINE Alu 3 291 -21 26223 133 13 25 chr6 76664767 76669719 -105745523 - L1PA8A LINE L1 -2 6444 1512 2076 84 7 11 chr6 76669719 76669994 -105745248 - AluY SINE Alu -15 296 23 26223 133 13 25 chr6 76669994 76671485 -105743757 - L1PA8A LINE L1 -4934 1512 4 24 0 0 0 chr6 76671485 76671509 -105743733 + AT_rich Low_complexity Low_complexity 1 24 0 376 313 100 21 chr6 76671586 76671913 -105743329 + L1M4 LINE L1 2111 2475 -4065 616 219 19 0 chr6 76671948 76672108 -105743134 - L1M4 LINE L1 -1054 5092 4930 * 7467 237 104 38 chr6 76672098 76675223 -105740019 + L1M4 LINE L1 2511 5826 -742 42978 36 21 2 chr6 76675232 76681437 -105733805 + L1HS LINE L1 1 6155 0 3114 224 72 11 chr6 76681453 76682383 -105732859 + L1ME1 LINE L1 5176 6162 -4 793 329 166 22 chr6 76682404 76683467 -105731775 - L2 LINE L2 -1052 2262 976 899 329 25 18 chr6 76683468 76683860 -105731382 - LTR16C LTR ERVL 0 491 97 414 299 39 7 chr6 76684058 76684212 -105731030 + MIR SINE MIR 79 237 -25 214 313 52 45 chr6 76684463 76684597 -105730645 - L3b LINE CR1 -6 1577 1443 405 295 43 14 chr6 76684664 76684803 -105730439 - L3b LINE CR1 -166 1417 1275 274 330 19 10 chr6 76685374 76685477 -105729765 - L3 LINE CR1 -737 840 737 989 192 79 5 chr6 76685499 76685702 -105729540 + MER20 DNA MER1_type 1 218 -1 184 172 35 0 chr6 76685709 76685767 -105729475 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 208 318 83 95 chr6 76685771 76686098 -105729144 - L3 LINE CR1 -1023 554 232 869 147 102 46 chr6 76686544 76686741 -105728501 + MER3 DNA MER1_type 1 208 -1 277 255 69 28 chr6 76687201 76687346 -105727896 - L1ME4a LINE L1 -8 6113 5963 706 229 64 96 chr6 76687605 76687950 -105727292 - L1ME4a LINE L1 -227 5894 5561 2213 109 3 10 chr6 76688018 76688320 -105726922 - AluSx SINE Alu -12 300 1 429 36 0 0 chr6 76689467 76689522 -105725720 + (TG)n Simple_repeat Simple_repeat 1 55 0 2450 46 0 20 chr6 76689908 76690213 -105725029 - AluY SINE Alu -11 300 2 209 217 109 0 chr6 76690316 76690362 -105724880 - L2 LINE L2 -3 3269 3219 207 353 241 0 chr6 76690522 76690638 -105724604 + L2 LINE L2 3122 3265 -7 369 255 57 38 chr6 76692257 76692414 -105722828 - MER20 DNA MER1_type 0 219 60 270 56 0 0 chr6 76692442 76692478 -105722764 + (TG)n Simple_repeat Simple_repeat 1 36 0 631 211 8 8 chr6 76692752 76692875 -105722367 + MIR SINE MIR 31 153 -109 541 251 0 76 chr6 76692880 76692943 -105722299 + MIR SINE MIR 105 171 -91 3231 147 128 22 chr6 76692943 76693653 -105721589 - LTR48 LTR ERV1 0 787 3 541 251 0 76 chr6 76693653 76693760 -105721482 + MIR SINE MIR 171 262 0 28 29 0 0 chr6 76694100 76694135 -105721107 + AT_rich Low_complexity Low_complexity 1 35 0 261 256 285 7 chr6 76694763 76694900 -105720342 - MIR SINE MIR -6 256 82 186 171 29 0 chr6 76695465 76695500 -105719742 + L2 LINE L2 3278 3313 0 806 322 78 34 chr6 76695576 76696076 -105719166 + L2 LINE L2 2376 2897 -417 337 216 134 0 chr6 76696121 76696218 -105719024 - L1MA4A LINE L1 -1 6302 6193 2125 160 12 8 chr6 76696226 76696627 -105718615 - L1MA4A LINE L1 -181 6122 5720 184 329 26 0 chr6 76696644 76696720 -105718522 + L2 LINE L2 3022 3099 -214 2112 147 39 85 chr6 76696801 76697283 -105717959 - MER31B LTR ERV1 -1 465 6 1187 169 29 62 chr6 76697327 76697635 -105717607 - MER33 DNA MER1_type -10 314 17 438 294 34 7 chr6 76700910 76701056 -105714186 - MIR3 SINE MIR -9 199 50 2290 84 0 0 chr6 76702036 76702340 -105712902 - AluSx SINE Alu 0 304 1 23 0 0 0 chr6 76702353 76702376 -105712866 + AT_rich Low_complexity Low_complexity 1 23 0 590 281 53 23 chr6 76703102 76703273 -105711969 - MER5B DNA MER1_type -1 177 2 319 297 22 0 chr6 76703593 76703684 -105711558 - MER5A DNA MER1_type -83 106 14 1470 74 55 20 chr6 76703752 76703954 -105711288 + AluSc SINE Alu 84 292 -17 673 256 17 6 chr6 76703958 76704130 -105711112 + MER5B DNA MER1_type 2 175 -3 1814 177 0 10 chr6 76704645 76704950 -105710292 - AluJo SINE Alu -10 302 1 420 303 62 28 chr6 76706352 76706563 -105708679 - MIR SINE MIR -27 235 18 22 56 0 0 chr6 76706574 76706610 -105708632 + AT_rich Low_complexity Low_complexity 1 36 0 1673 149 14 58 chr6 76706654 76706973 -105708269 + AluSx SINE Alu 1 306 0 12536 121 41 33 chr6 76707162 76708068 -105707174 - Tigger1 DNA MER2_type -1 2417 1520 2541 58 0 3 chr6 76708068 76708376 -105706866 - AluY SINE Alu -4 307 1 12536 121 41 33 chr6 76708376 76709561 -105705681 - Tigger1 DNA MER2_type -898 1520 309 2585 262 55 38 chr6 76709574 76709917 -105705325 - L1ME LINE L1 -4981 1089 753 2245 112 3 0 chr6 76709917 76710220 -105705022 + AluSp SINE Alu 3 306 -7 2585 262 55 38 chr6 76710220 76710938 -105704304 - L1ME LINE L1 -5317 753 10 977 289 98 3 chr6 76711032 76711368 -105703874 + L2 LINE L2 2510 2877 -437 21 0 0 0 chr6 76712030 76712051 -105703191 + AT_rich Low_complexity Low_complexity 1 21 0 372 306 20 10 chr6 76713292 76713390 -105701852 - L2 LINE L2 -19 3294 3196 182 156 22 0 chr6 76713893 76713938 -105701304 + (TA)n Simple_repeat Simple_repeat 2 47 0 601 243 69 12 chr6 76714942 76715115 -105700127 + MIR SINE MIR 77 259 -3 450 305 19 0 chr6 76715314 76715419 -105699823 + L2 LINE L2 3195 3301 -12 235 331 136 12 chr6 76715800 76715969 -105699273 + MIR3 SINE MIR 12 201 -7 1696 222 148 17 chr6 76716161 76716620 -105698622 - LTR40a LTR ERVL 0 519 1 1264 247 28 6 chr6 76716623 76716966 -105698276 - HERVL40 LTR ERVL -4 5526 2783 851 267 5 14 chr6 76716965 76717186 -105698056 - HERVL40 LTR ERVL -1073 4457 4239 * 383 182 45 11 chr6 76717193 76717281 -105697961 - LTR40a LTR ERVL -428 91 1 326 356 158 14 chr6 76717680 76717902 -105697340 + MIR SINE MIR 3 256 -6 2105 123 7 0 chr6 76718953 76719254 -105695988 + AluSq SINE Alu 1 303 -10 312 267 62 31 chr6 76719570 76719731 -105695511 + L1MC/D LINE L1 4890 5055 -1091 22 70 0 0 chr6 76719731 76719774 -105695468 + AT_rich Low_complexity Low_complexity 1 43 0 750 263 157 42 chr6 76719880 76720337 -105694905 + L1MC/D LINE L1 5272 5773 -569 2063 143 0 0 chr6 76720389 76720690 -105694552 + AluSx SINE Alu 6 306 -6 874 269 18 42 chr6 76720937 76721271 -105693971 - HAL1 LINE L1 -699 1808 1483 24 32 0 0 chr6 76721647 76721678 -105693564 + AT_rich Low_complexity Low_complexity 1 31 0 3643 121 4 2 chr6 76725261 76725783 -105689459 + MER1A DNA MER1_type 1 523 -4 21 82 0 0 chr6 76727194 76727243 -105687999 + AT_rich Low_complexity Low_complexity 1 49 0 28054 39 9 0 chr6 76727282 76731486 -105683756 + L1PA5 LINE L1 1905 6145 -9 30 77 0 0 chr6 76731487 76731552 -105683690 + AT_rich Low_complexity Low_complexity 1 65 0 22 56 0 0 chr6 76731624 76731660 -105683582 + AT_rich Low_complexity Low_complexity 1 36 0 535 330 108 26 chr6 76732155 76732618 -105682624 - L2 LINE L2 -737 2577 2077 24 0 0 0 chr6 76732820 76732844 -105682398 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 76732929 76732950 -105682292 + AT_rich Low_complexity Low_complexity 1 21 0 1383 328 95 37 chr6 76734159 76735061 -105680181 - L3 LINE CR1 -198 1379 425 235 279 29 0 chr6 76735625 76735693 -105679549 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 620 259 5 86 chr6 76737798 76737844 -105677398 + MIR SINE MIR 7 55 -207 2013 126 0 0 chr6 76737844 76738172 -105677070 - AluSq SINE Alu 0 328 1 620 259 5 86 chr6 76738172 76738320 -105676922 + MIR SINE MIR 55 187 -75 2342 108 0 0 chr6 76739105 76739412 -105675830 + AluSx SINE Alu 5 311 -1 203 274 59 0 chr6 76743118 76743169 -105672073 - L2 LINE L2 0 3272 3219 868 240 163 29 chr6 76743174 76743524 -105671718 - LTR16A1 LTR ERVL 0 457 61 2017 136 3 0 chr6 76743669 76743963 -105671279 + AluSx SINE Alu 1 295 -17 2135 87 7 7 chr6 76747308 76747595 -105667647 - AluSx SINE Alu -25 287 1 1931 132 30 21 chr6 76747629 76747963 -105667279 - MER1B DNA MER1_type 0 337 1 508 241 174 10 chr6 76748240 76748435 -105666807 + MER5C DNA MER1_type 98 324 0 239 299 0 15 chr6 76749160 76749227 -105666015 - MIR SINE MIR -130 132 67 301 244 34 59 chr6 76749270 76749389 -105665853 - MER112 DNA MER1_type -9 251 136 562 273 132 32 chr6 76749764 76749984 -105665258 + MIR SINE MIR 20 261 -1 266 304 113 17 chr6 76750097 76750212 -105665030 + MER91A DNA MER1_type 5 130 -66 307 264 176 19 chr6 76751163 76751322 -105663920 + L1ME2 LINE L1 5830 6013 -151 213 39 0 0 chr6 76751541 76751567 -105663675 + (CAAAAA)n Simple_repeat Simple_repeat 1 26 0 1114 245 153 32 chr6 76751754 76751832 -105663410 - L2 LINE L2 -12 3301 3234 1016 201 31 45 chr6 76751832 76752056 -105663186 + MER58A DNA MER1_type 3 223 -1 1114 245 153 32 chr6 76752056 76752474 -105662768 - L2 LINE L2 -79 3234 2759 223 326 30 45 chr6 76753139 76753271 -105661971 - MIR SINE MIR -98 164 35 264 315 174 11 chr6 76753603 76753695 -105661547 + L2 LINE L2 3149 3255 -17 1207 155 14 10 chr6 76754867 76755074 -105660168 + AluJo SINE Alu 87 294 -18 1829 177 21 6 chr6 76755109 76755448 -105659794 - MER2 DNA MER2_type 0 344 1 376 285 200 24 chr6 76755631 76756021 -105659221 + L2 LINE L2 2735 3176 -137 627 309 109 0 chr6 76756033 76756243 -105658999 + MIR SINE MIR 3 235 -27 253 319 186 0 chr6 76756246 76756359 -105658883 + L2 LINE L2 3176 3309 -4 886 242 26 22 chr6 76759786 76760182 -105655060 - L1ME3A LINE L1 0 6170 5735 608 233 25 24 chr6 76760390 76760405 -105654837 - L1ME3A LINE L1 -595 5569 5556 3291 142 9 9 chr6 76760405 76760969 -105654273 - L1MB2 LINE L1 -2 6169 5606 1577 143 0 42 chr6 76760969 76761255 -105653987 - AluJb SINE Alu -15 297 24 608 233 25 24 chr6 76761255 76761384 -105653858 - L1ME3A LINE L1 -607 5557 5425 690 146 9 0 chr6 76761650 76761760 -105653482 + MER5A DNA MER1_type 2 112 -77 254 182 23 0 chr6 76761763 76761807 -105653435 + AluSg/x SINE Alu 136 180 -122 351 129 210 0 chr6 76762120 76762182 -105653060 - AluJb SINE Alu -175 127 53 1079 144 6 0 chr6 76762186 76762360 -105652882 - L1MB2 LINE L1 -273 5898 5724 415 179 26 13 chr6 76762410 76762488 -105652754 + MER5A DNA MER1_type 103 181 -8 961 106 0 21 chr6 76763826 76763967 -105651275 + FLAM_C SINE Alu 6 143 0 2331 115 17 6 chr6 76764137 76764494 -105650748 + MER46B DNA MER2_type 1 236 0 1400 102 245 12 chr6 76765417 76765662 -105649580 - AluSx SINE Alu -10 302 1 26 0 0 0 chr6 76765666 76765692 -105649550 + AT_rich Low_complexity Low_complexity 1 26 0 42 36 0 0 chr6 76766201 76766257 -105648985 + AT_rich Low_complexity Low_complexity 1 56 0 445 333 8 0 chr6 76766495 76766627 -105648615 - MER5A DNA MER1_type 0 189 57 365 328 94 8 chr6 76767663 76767919 -105647323 + L2 LINE L2 1846 2123 -1191 366 371 45 35 chr6 76767924 76768464 -105646778 + L2 LINE L2 2225 2861 -453 264 295 153 55 chr6 76768543 76768797 -105646445 + L2 LINE L2 2994 3272 0 2118 148 102 10 chr6 76769085 76769477 -105645765 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr6 76770011 76770040 -105645202 + AT_rich Low_complexity Low_complexity 1 29 0 1944 87 0 0 chr6 76770098 76770340 -105644902 - AluSc SINE Alu -67 242 1 24 0 0 0 chr6 76770698 76770722 -105644520 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 76770899 76770920 -105644322 + AT_rich Low_complexity Low_complexity 1 21 0 339 25 0 0 chr6 76771206 76771246 -105643996 + (TG)n Simple_repeat Simple_repeat 2 41 0 402 360 85 0 chr6 76771867 76772056 -105643186 - MIR SINE MIR -37 225 21 267 297 59 0 chr6 76772226 76772327 -105642915 + MIR SINE MIR 60 166 -96 609 305 77 94 chr6 76773834 76774348 -105640894 - L2 LINE L2 0 3313 2794 378 0 0 0 chr6 76774426 76774468 -105640774 + (TG)n Simple_repeat Simple_repeat 2 43 0 2093 141 3 3 chr6 76778723 76779035 -105636207 - AluSx SINE Alu 0 312 1 412 254 164 24 chr6 76779225 76779390 -105635852 + MIR SINE MIR 17 204 -58 345 285 177 0 chr6 76780149 76780279 -105634963 + MIR SINE MIR 49 201 -61 216 130 0 0 chr6 76780681 76780727 -105634515 + (T)n Simple_repeat Simple_repeat 1 46 0 226 331 115 54 chr6 76781241 76781389 -105633853 - L2 LINE L2 -8 3264 3108 724 280 95 0 chr6 76784461 76784693 -105630549 + MIR SINE MIR 6 259 -3 2213 117 0 0 chr6 76784693 76784993 -105630249 + AluSx SINE Alu 1 300 -12 7671 22 1 3 chr6 76787924 76788854 -105626388 + L1PA3 LINE L1 5223 6151 -4 666 152 23 0 chr6 76788870 76789002 -105626240 + L1MA4 LINE L1 5769 5903 -397 923 239 5 5 chr6 76791541 76791738 -105623504 - MLT1C LTR MaLR 0 467 271 274 340 186 12 chr6 76791916 76792329 -105622913 - L2 LINE L2 -214 3058 2569 2427 122 28 8 chr6 76792427 76792779 -105622463 - THE1B LTR MaLR 0 364 6 354 316 166 63 chr6 76793004 76793492 -105621750 - L2 LINE L2 -957 2357 1820 1742 179 54 43 chr6 76793508 76794050 -105621192 - MER67C LTR ERV1 -3 511 1 968 105 14 7 chr6 76794454 76794597 -105620645 + BC200 scRNA scRNA 2 145 -55 2243 110 0 0 chr6 76795117 76795409 -105619833 - AluSx SINE Alu -19 293 2 1596 181 7 4 chr6 76797010 76797287 -105617955 + AluJo SINE Alu 9 286 -26 583 253 84 12 chr6 76797495 76797661 -105617581 - MER5B DNA MER1_type 0 178 1 370 323 99 22 chr6 76797670 76797893 -105617349 + MIR SINE MIR 20 259 -3 445 213 25 8 chr6 76799359 76799481 -105615761 - MER113 DNA MER1_type? -397 124 1 4496 173 38 14 chr6 76799648 76800439 -105614803 - MER21B LTR ERV1 -49 814 5 3324 140 15 8 chr6 76800439 76800960 -105614282 - LTR45 LTR ERV1 0 525 1 21 57 0 0 chr6 76800973 76801008 -105614234 + AT_rich Low_complexity Low_complexity 1 35 0 431 302 47 5 chr6 76801222 76801414 -105613828 + L1ME2 LINE L1 5695 5894 -270 609 322 29 5 chr6 76802762 76802970 -105612272 - MIR SINE MIR -21 241 29 208 330 121 11 chr6 76804043 76804134 -105611108 + MER5A DNA MER1_type 65 165 -24 * 490 252 9 9 chr6 76804055 76804166 -105611076 - MER5A DNA MER1_type -75 114 4 449 317 66 12 chr6 76804641 76804808 -105610434 - MIR3 SINE MIR -14 194 19 1418 184 72 31 chr6 76805013 76805333 -105609909 + MER2 DNA MER2_type 2 334 -11 23 0 0 0 chr6 76806174 76806197 -105609045 + AT_rich Low_complexity Low_complexity 1 23 0 251 118 0 0 chr6 76809268 76809302 -105605940 + MER91 DNA MER1_type 72 105 -35 291 93 0 0 chr6 76809652 76809695 -105605547 + (TGAG)n Simple_repeat Simple_repeat 1 43 0 3171 147 16 18 chr6 76810008 76810581 -105604661 + L1PA16 LINE L1 5593 6164 -2 1902 158 0 0 chr6 76810603 76810887 -105604355 - AluJb SINE Alu -10 302 19 22 35 0 0 chr6 76811288 76811317 -105603925 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr6 76811335 76811367 -105603875 + AT_rich Low_complexity Low_complexity 1 32 0 2795 224 87 29 chr6 76812463 76813257 -105601985 - MER21B LTR ERV1 -5 858 19 427 191 11 34 chr6 76813281 76813370 -105601872 - MER21B LTR ERV1 -776 87 1 2277 118 0 0 chr6 76813529 76813833 -105601409 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr6 76813931 76813952 -105601290 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr6 76815928 76815965 -105599277 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr6 76817116 76817141 -105598101 + (CA)n Simple_repeat Simple_repeat 2 26 0 183 270 16 32 chr6 76817188 76817251 -105597991 + L2 LINE L2 3207 3268 -4 26 30 0 0 chr6 76817322 76817355 -105597887 + AT_rich Low_complexity Low_complexity 1 33 0 458 329 42 9 chr6 76817432 76817648 -105597594 - MIR SINE MIR -11 251 30 517 343 137 45 chr6 76818056 76818671 -105596571 - L3 LINE CR1 -785 792 122 4345 27 9 4 chr6 76818848 76819374 -105595868 - L1PA7 LINE L1 -2 6152 5624 2090 167 33 27 chr6 76819405 76819961 -105595281 - MLT2A2 LTR ERVL 0 554 1 182 114 0 29 chr6 76821343 76821378 -105593864 + (TA)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr6 76821379 76821402 -105593840 + (GA)n Simple_repeat Simple_repeat 1 23 0 261 196 0 0 chr6 76824271 76824327 -105590915 + (CA)n Simple_repeat Simple_repeat 1 56 0 283 230 70 0 chr6 76824839 76824939 -105590303 - L1ME4a LINE L1 -2 6119 6013 1812 117 99 40 chr6 76824979 76825331 -105589911 - THE1C LTR MaLR -2 373 1 763 230 87 65 chr6 76825331 76825640 -105589602 + MER46C DNA MER2_type 8 323 -15 1621 130 0 0 chr6 76826371 76826601 -105588641 + L1PB3 LINE L1 5908 6137 -17 29 60 0 0 chr6 76826601 76826651 -105588591 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr6 76827118 76827140 -105588102 + AT_rich Low_complexity Low_complexity 1 22 0 388 194 43 0 chr6 76827409 76827502 -105587740 + MER53 DNA DNA 7 103 -86 245 33 0 0 chr6 76827499 76827529 -105587713 - MER53 DNA DNA -159 30 1 * 22 0 0 0 chr6 76827788 76827810 -105587432 + AT_rich Low_complexity Low_complexity 1 22 0 1600 169 7 21 chr6 76828633 76828917 -105586325 - MLT1A1 LTR MaLR -13 352 73 249 276 15 0 chr6 76831094 76831183 -105584059 + MIR SINE MIR 33 123 -85 196 338 56 0 chr6 76831938 76832009 -105583233 + L2 LINE L2 3197 3271 -1 22 70 0 0 chr6 76832944 76832987 -105582255 + AT_rich Low_complexity Low_complexity 1 43 0 201 186 0 23 chr6 76833008 76833051 -105582191 + T-rich Low_complexity Low_complexity 2 43 0 22 0 0 0 chr6 76835416 76835438 -105579804 + AT_rich Low_complexity Low_complexity 1 22 0 1435 106 55 0 chr6 76835932 76836149 -105579093 - MER30 DNA MER1_type 0 230 2 990 225 173 48 chr6 76836926 76837366 -105577876 - L2 LINE L2 -1 3312 2818 504 240 0 32 chr6 76837397 76837522 -105577720 + MER5C DNA MER1_type 1 121 -203 248 250 73 0 chr6 76837561 76837629 -105577613 + MER5C DNA MER1_type 251 323 -1 5558 241 100 45 chr6 76837646 76839170 -105576072 - L2 LINE L2 -520 2794 1138 2216 98 27 0 chr6 76839170 76839465 -105575777 + AluSx SINE Alu 1 303 -9 5558 241 100 45 chr6 76839465 76839905 -105575337 - L2 LINE L2 -2176 1138 723 28 29 0 0 chr6 76840297 76840332 -105574910 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 76840556 76840584 -105574658 + AT_rich Low_complexity Low_complexity 1 28 0 338 279 27 0 chr6 76840628 76840739 -105574503 - L1M4 LINE L1 -1535 4611 4498 211 139 70 0 chr6 76841628 76841671 -105573571 + T-rich Low_complexity Low_complexity 4 49 0 432 340 5 5 chr6 76842723 76842914 -105572328 + MARNA DNA Mariner 288 478 -108 1608 171 45 7 chr6 76842989 76843281 -105571961 + AluJb SINE Alu 1 303 -9 622 185 0 55 chr6 76843391 76843537 -105571705 + L1MB3 LINE L1 6043 6180 -3 1994 130 0 11 chr6 76844759 76845070 -105570172 - AluSx SINE Alu 0 308 1 219 256 22 78 chr6 76845941 76846031 -105569211 - L2 LINE L2 -4 3268 3184 219 271 71 24 chr6 76846250 76846335 -105568907 + MIR SINE MIR 168 256 -6 1396 294 280 21 chr6 76846431 76846541 -105568701 - L2 LINE L2 0 3313 3233 225 0 0 0 chr6 76846541 76846566 -105568676 + (CA)n Simple_repeat Simple_repeat 2 26 0 1396 294 280 21 chr6 76846566 76848213 -105567029 - L2 LINE L2 -80 3233 1075 404 235 130 37 chr6 76849279 76849441 -105565801 - MIR SINE MIR -52 210 34 1086 193 33 5 chr6 76850117 76850329 -105564913 - MER20 DNA MER1_type -1 218 1 593 267 75 47 chr6 76850711 76851138 -105564104 - L1ME4a LINE L1 0 6121 5683 225 65 0 0 chr6 76851594 76851625 -105563617 + (TC)n Simple_repeat Simple_repeat 2 32 0 2365 63 0 7 chr6 76851760 76852064 -105563178 - AluSp SINE Alu 0 302 1 754 283 44 0 chr6 76852509 76852714 -105562528 - MIR SINE MIR -13 249 36 538 259 110 53 chr6 76853066 76853298 -105561944 - MIR SINE MIR 0 262 17 22 0 0 0 chr6 76853832 76853854 -105561388 + AT_rich Low_complexity Low_complexity 1 22 0 637 283 153 23 chr6 76855110 76855417 -105559825 - L3 LINE CR1 -42 1535 1189 896 199 126 95 chr6 76855516 76855842 -105559400 + MER58B DNA MER1_type 6 341 0 1017 305 75 40 chr6 76855848 76856405 -105558837 - L3 LINE CR1 -571 1006 430 288 341 38 8 chr6 76856523 76856655 -105558587 - L1MC3 LINE L1 -952 6833 6698 1448 87 5 0 chr6 76856781 76856965 -105558277 - AluSg/x SINE Alu -35 277 93 315 91 52 26 chr6 76857132 76857209 -105558033 + CT-rich Low_complexity Low_complexity 2 80 0 666 219 133 0 chr6 76857354 76857505 -105557737 - MER45A DNA AcHobo -7 171 1 197 193 0 18 chr6 76859648 76859705 -105555537 + (TA)n Simple_repeat Simple_repeat 2 57 0 243 0 0 0 chr6 76859833 76859860 -105555382 + (TA)n Simple_repeat Simple_repeat 2 28 0 1134 248 75 26 chr6 76859870 76860698 -105554544 - HAL1 LINE L1 -1547 960 8 2412 79 0 10 chr6 76861837 76862142 -105553100 + AluY SINE Alu 3 304 -7 21 36 0 0 chr6 76862739 76862767 -105552475 + AT_rich Low_complexity Low_complexity 1 28 0 2181 197 89 45 chr6 76863382 76863921 -105551321 - MLT1F1 LTR MaLR -4 563 1 21 0 0 0 chr6 76864686 76864707 -105550535 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr6 76866942 76866966 -105548276 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 259 294 42 17 chr6 76868135 76868254 -105546988 + MER20B DNA MER1_type 36 157 -626 2275 101 0 3 chr6 76868561 76868857 -105546385 - AluSq SINE Alu -18 295 1 2112 120 0 19 chr6 76871043 76871352 -105543890 + AluSx SINE Alu 1 303 -9 207 0 0 0 chr6 76872061 76872084 -105543158 + (T)n Simple_repeat Simple_repeat 1 23 0 25 31 0 0 chr6 76874040 76874072 -105541170 + AT_rich Low_complexity Low_complexity 1 32 0 1892 143 0 33 chr6 76878498 76878799 -105536443 - AluJo SINE Alu -21 291 1 26 50 0 0 chr6 76879629 76879669 -105535573 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr6 76880080 76880106 -105535136 + AT_rich Low_complexity Low_complexity 1 26 0 255 61 0 0 chr6 76880609 76880642 -105534600 + (CA)n Simple_repeat Simple_repeat 2 34 0 262 64 0 43 chr6 76881897 76881944 -105533298 + (ATG)n Simple_repeat Simple_repeat 2 46 0 1262 172 48 41 chr6 76882032 76882346 -105532896 + MER33 DNA MER1_type 1 316 -8 451 280 121 0 chr6 76882401 76882533 -105532709 + MIR SINE MIR 3 150 -112 2196 114 0 7 chr6 76882555 76882844 -105532398 + AluSx SINE Alu 1 287 -25 794 191 185 0 chr6 76884021 76884210 -105531032 + MER58A DNA MER1_type 1 224 0 809 214 86 14 chr6 76884341 76884551 -105530691 - Charlie8 DNA MER1_type -2153 264 40 276 30 0 0 chr6 76884836 76884869 -105530373 + (CAT)n Simple_repeat Simple_repeat 3 35 0 260 296 25 0 chr6 76884920 76885001 -105530241 - MIR SINE MIR -109 153 71 261 0 0 0 chr6 76885086 76885115 -105530127 + (TG)n Simple_repeat Simple_repeat 1 29 0 884 151 0 0 chr6 76885616 76885768 -105529474 + L1MA5A LINE L1 6145 6296 -1 189 259 0 69 chr6 76886901 76886959 -105528283 - L2 LINE L2 -9 3263 3210 * 420 205 86 26 chr6 76886926 76887043 -105528199 - MIR SINE MIR -24 238 115 962 273 8 5 chr6 76887964 76888221 -105527021 - MIR SINE MIR -3 259 1 22 0 0 0 chr6 76889591 76889613 -105525629 + AT_rich Low_complexity Low_complexity 1 22 0 549 285 115 13 chr6 76890851 76891362 -105523880 + L1MC4a LINE L1 3838 4432 -1714 398 300 135 28 chr6 76891537 76891937 -105523305 + L1MC4a LINE L1 4638 5080 -1066 1844 243 103 55 chr6 76891957 76892788 -105522454 + L1MC4a LINE L1 5268 6138 -1670 911 158 89 0 chr6 76895395 76895553 -105519689 + MER5B DNA MER1_type 1 172 -6 652 209 57 0 chr6 76895739 76895897 -105519345 - MER5A DNA MER1_type -21 168 2 27 0 0 0 chr6 76896936 76896963 -105518279 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr6 76898932 76898955 -105516287 + (TG)n Simple_repeat Simple_repeat 1 23 0 2024 134 0 3 chr6 76899868 76900176 -105515066 + AluSg SINE Alu 1 307 0 2360 91 3 0 chr6 76900529 76900838 -105514404 + AluY SINE Alu 1 310 -1 2364 93 0 3 chr6 76901517 76901819 -105513423 - AluSp SINE Alu -12 301 1 299 295 129 62 chr6 76902715 76902908 -105512334 - L2 LINE L2 -465 2849 2644 2327 101 0 0 chr6 76903553 76903849 -105511393 + AluSx SINE Alu 1 296 -16 386 336 58 0 chr6 76904132 76904269 -105510973 + MIR3 SINE MIR 50 194 -14 2342 85 0 0 chr6 76908231 76908524 -105506718 - AluSx SINE Alu -19 293 1 730 42 104 0 chr6 76910035 76910131 -105505111 - MER85 DNA T2_type -33 106 1 2135 112 3 0 chr6 76910369 76910663 -105504579 + AluSq SINE Alu 1 295 -18 1877 148 30 7 chr6 76910781 76911085 -105504157 + AluSx SINE Alu 1 311 -1 257 261 31 31 chr6 76911243 76911308 -105503934 - MER5A DNA MER1_type -60 129 65 917 251 39 0 chr6 76911502 76911733 -105503509 + MIR SINE MIR 19 258 -4 213 232 11 63 chr6 76913420 76913515 -105501727 - L2 LINE L2 0 3313 3224 409 257 62 28 chr6 76913964 76914108 -105501134 + MER20B DNA MER1_type 30 178 -605 281 272 134 62 chr6 76914133 76914357 -105500885 - L2 LINE L2 -653 2661 2422 1920 166 0 0 chr6 76914675 76914970 -105500272 + AluJb SINE Alu 1 295 -17 2614 157 35 108 chr6 76915616 76915959 -105499283 + L1MB8 LINE L1 5574 5850 -328 1743 171 0 14 chr6 76915959 76916251 -105498991 + AluJo SINE Alu 1 288 -24 2614 157 35 108 chr6 76916251 76916543 -105498699 + L1MB8 LINE L1 5850 6162 -16 24 77 0 0 chr6 76918028 76918080 -105497162 + AT_rich Low_complexity Low_complexity 1 52 0 30 27 0 0 chr6 76921316 76921353 -105493889 + AT_rich Low_complexity Low_complexity 1 37 0 2377 90 0 10 chr6 76921745 76922055 -105493187 - AluSc SINE Alu -2 307 1 1424 165 8 0 chr6 76922212 76922461 -105492781 + AluSx SINE Alu 50 300 -12 22 0 0 0 chr6 76924825 76924847 -105490395 + AT_rich Low_complexity Low_complexity 1 22 0 2413 68 0 19 chr6 76924956 76925263 -105489979 + AluSq SINE Alu 1 301 -12 196 283 67 0 chr6 76926003 76926063 -105489179 + MIR3 SINE MIR 138 201 -7 294 243 105 66 chr6 76926396 76926548 -105488694 - MARNA DNA Mariner -343 243 86 24 32 0 0 chr6 76926808 76926839 -105488403 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 76927913 76927934 -105487308 + AT_rich Low_complexity Low_complexity 1 21 0 315 263 102 29 chr6 76928129 76928266 -105486976 - L1ME4a LINE L1 -12 6109 5963 219 283 0 0 chr6 76928267 76928327 -105486915 + GA-rich Low_complexity Low_complexity 2 61 0 321 305 43 39 chr6 76928772 76929051 -105486191 - L1M4 LINE L1 -1332 4814 4535 249 281 61 12 chr6 76930195 76930277 -105484965 + L2 LINE L2 3219 3304 -9 2417 80 3 0 chr6 76932016 76932318 -105482924 - AluSp SINE Alu -10 303 1 1899 167 3 3 chr6 76932918 76933211 -105482031 - AluJo SINE Alu -19 293 1 23 33 0 0 chr6 76934448 76934478 -105480764 + AT_rich Low_complexity Low_complexity 1 30 0 287 315 11 22 chr6 76937454 76937546 -105477696 + L2 LINE L2 3173 3263 -9 256 77 211 0 chr6 76938586 76938672 -105476570 + L1PA4 LINE L1 6080 6176 0 2974 63 0 20 chr6 76938886 76939280 -105475962 - L1PA11 LINE L1 0 6174 5789 263 319 0 53 chr6 76941502 76941596 -105473646 + MIR SINE MIR 52 140 -122 215 173 58 19 chr6 76943263 76943315 -105471927 + CT-rich Low_complexity Low_complexity 2 55 0 33 66 0 0 chr6 76943738 76943799 -105471443 + AT_rich Low_complexity Low_complexity 1 61 0 1688 47 0 33 chr6 76944155 76944367 -105470875 + AluSq SINE Alu 101 305 -8 210 71 0 0 chr6 76945402 76945430 -105469812 + (TC)n Simple_repeat Simple_repeat 1 28 0 235 216 80 45 chr6 76948841 76948929 -105466313 - MIR SINE MIR -81 127 37 26 0 0 0 chr6 76949146 76949172 -105466070 + AT_rich Low_complexity Low_complexity 1 26 0 237 114 0 0 chr6 76950240 76950275 -105464967 + HY3 scRNA scRNA 1 35 -66 2277 110 0 3 chr6 76950574 76950884 -105464358 - AluSc SINE Alu 0 309 1 21 57 0 0 chr6 76951999 76952034 -105463208 + AT_rich Low_complexity Low_complexity 1 35 0 3628 253 117 27 chr6 76952222 76953699 -105461543 + L2 LINE L2 1699 3313 0 432 235 59 0 chr6 76953773 76953875 -105461367 + MIR3 SINE MIR 95 202 -6 200 376 56 0 chr6 76955970 76956095 -105459147 + L2 LINE L2 2927 3058 -214 304 269 27 67 chr6 76956569 76956718 -105458524 + MIR SINE MIR 96 238 -24 183 80 0 0 chr6 76957885 76957910 -105457332 + (GA)n Simple_repeat Simple_repeat 1 25 0 396 0 0 0 chr6 76958328 76958372 -105456870 + (CA)n Simple_repeat Simple_repeat 1 44 0 2220 110 13 3 chr6 76959975 76960284 -105454958 - AluSq SINE Alu -1 312 1 31 44 0 0 chr6 76961456 76961501 -105453741 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr6 76961522 76961544 -105453698 + AT_rich Low_complexity Low_complexity 1 22 0 352 316 82 0 chr6 76962906 76963064 -105452178 - MIR SINE MIR -2 260 90 216 261 29 29 chr6 76963111 76963180 -105452062 + CT-rich Low_complexity Low_complexity 3 71 0 422 311 53 21 chr6 76963585 76963775 -105451467 + MIR SINE MIR 2 197 -65 267 0 70 0 chr6 76965133 76965176 -105450066 + (TAA)n Simple_repeat Simple_repeat 3 48 0 26 30 0 0 chr6 76965231 76965264 -105449978 + AT_rich Low_complexity Low_complexity 1 33 0 2254 122 0 3 chr6 76965990 76966301 -105448941 + AluSx SINE Alu 1 310 -2 244 258 32 0 chr6 76966400 76966462 -105448780 - L2 LINE L2 0 3272 3209 2425 94 0 0 chr6 76966897 76967204 -105448038 - AluSg SINE Alu -3 307 1 257 311 8 15 chr6 76967363 76967495 -105447747 + CT-rich Low_complexity Low_complexity 1 131 0 487 304 26 31 chr6 76968137 76968328 -105446914 + MIR SINE MIR 28 217 -45 394 315 30 18 chr6 76968362 76968527 -105446715 - MIR SINE MIR -21 241 75 970 156 0 81 chr6 76968960 76969146 -105446096 - AluJo SINE Alu -19 293 123 2389 83 3 13 chr6 76969977 76970289 -105444953 + AluSx SINE Alu 1 309 -3 1913 160 0 6 chr6 76970298 76970611 -105444631 + AluJb SINE Alu 1 311 -1 307 337 122 50 chr6 76971137 76971499 -105443743 - L2 LINE L2 -1 3271 2884 * 450 310 67 53 chr6 76971495 76971837 -105443405 - L2 LINE L2 0 3313 2967 650 173 0 18 chr6 76972618 76972728 -105442514 + FLAM_A SINE Alu 20 127 -15 21 71 0 0 chr6 76972969 76973011 -105442231 + AT_rich Low_complexity Low_complexity 1 42 0 243 302 86 9 chr6 76973238 76973354 -105441888 + MER112 DNA MER1_type 129 253 -7 567 228 20 19 chr6 76974357 76974493 -105440749 - MER5A DNA MER1_type -42 147 1 25 0 0 0 chr6 76974584 76974609 -105440633 + AT_rich Low_complexity Low_complexity 1 25 0 800 240 143 5 chr6 76975299 76975516 -105439726 + MIR SINE MIR 16 262 0 238 247 0 32 chr6 76976123 76976216 -105439026 - L1MC4 LINE L1 -1339 6703 6614 1353 113 35 4 chr6 76976291 76976522 -105438720 + L1MA3 LINE L1 6066 6303 -2 497 204 84 7 chr6 76976524 76976666 -105438576 - L1ME4a LINE L1 -12 6109 5957 25 0 0 0 chr6 76977420 76977445 -105437797 + AT_rich Low_complexity Low_complexity 1 25 0 309 339 63 8 chr6 76977456 76977583 -105437659 - MIR SINE MIR -109 153 20 228 182 0 0 chr6 76977610 76977654 -105437588 + (CA)n Simple_repeat Simple_repeat 1 44 0 286 360 37 7 chr6 76978360 76978496 -105436746 - L2 LINE L2 -228 3044 2905 195 322 98 24 chr6 76980201 76980379 -105434863 + MIR3 SINE MIR 3 211 -51 284 309 73 42 chr6 76980426 76980591 -105434651 - L2 LINE L2 -16 3297 3128 363 315 77 0 chr6 76981190 76981333 -105433909 - MIR SINE MIR 0 262 109 288 0 0 0 chr6 76981510 76981542 -105433700 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2091 120 0 0 chr6 76981547 76981823 -105433419 - AluSx SINE Alu -36 276 1 405 0 0 0 chr6 76982015 76982060 -105433182 + (TG)n Simple_repeat Simple_repeat 2 46 0 42538 37 1 1 chr6 76982260 76988416 -105426826 + L1PA4 LINE L1 1 6152 -3 2098 143 0 9 chr6 76989279 76989594 -105425648 + AluSx SINE Alu 1 312 0 576 215 12 99 chr6 76989605 76989777 -105425465 - MER5B DNA MER1_type -21 157 1 538 185 25 84 chr6 76990775 76990894 -105424348 - MER81 DNA DNA -2 112 1 517 319 31 12 chr6 76991066 76991226 -105424016 - MIR SINE MIR -78 184 22 26 50 0 0 chr6 76991565 76991605 -105423637 + AT_rich Low_complexity Low_complexity 1 40 0 1969 125 12 56 chr6 76994293 76994496 -105420746 - AluSx SINE Alu -5 307 122 2570 52 0 0 chr6 76994496 76994806 -105420436 + AluY SINE Alu 2 311 0 1969 125 12 56 chr6 76994806 76994923 -105420319 - AluSx SINE Alu -190 122 1 950 231 45 16 chr6 76995023 76995270 -105419972 - LTR40b LTR ERVL 0 462 209 218 95 24 0 chr6 76995315 76995357 -105419885 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 29630 111 12 56 chr6 76995357 77001778 -105413464 - L1PA7 LINE L1 -24 6130 12 1007 235 29 4 chr6 77001789 77002032 -105413210 - LTR40a LTR ERVL -270 249 1 22 0 0 0 chr6 77002762 77002784 -105412458 + AT_rich Low_complexity Low_complexity 1 22 0 2097 166 3 8 chr6 77002820 77003188 -105412054 - MER47A DNA MER2_type 0 366 1 5474 134 2 21 chr6 77003305 77004790 -105410452 - L1PA15 LINE L1 0 7603 6133 2111 125 0 0 chr6 77004790 77005097 -105410145 + AluSg SINE Alu 1 307 0 5474 134 2 21 chr6 77005097 77005263 -105409979 - L1PA15 LINE L1 -1470 6133 5965 2204 136 19 21 chr6 77005263 77005639 -105409603 - THE1C LTR MaLR 0 375 1 9505 115 45 6 chr6 77005646 77007160 -105408082 - THE1C-int LTR MaLR -7 1573 1 2343 135 5 16 chr6 77007160 77007539 -105407703 - THE1C LTR MaLR 0 375 1 13605 213 17 10 chr6 77007539 77011776 -105403466 - L1PA15 LINE L1 -1615 5969 1688 523 315 52 29 chr6 77011945 77012425 -105402817 - L1PA12 LINE L1 -5501 2080 1590 228 269 0 0 chr6 77012444 77012496 -105402746 + LTR30 LTR ERV1 1 52 -670 928 150 70 8 chr6 77012496 77012696 -105402546 + LTR12 LTR ERV1 100 288 -426 333 209 12 0 chr6 77012696 77012782 -105402460 + LTR30 LTR ERV1 556 642 -80 631 106 0 39 chr6 77012785 77012889 -105402353 + LTR12 LTR ERV1 615 714 0 1356 308 5 0 chr6 77012893 77013315 -105401927 - L1PA12 LINE L1 -6008 1573 1150 2135 111 0 10 chr6 77013588 77013886 -105401356 + AluSx SINE Alu 2 296 -16 2104 112 7 0 chr6 77013917 77014219 -105401023 + AluSg SINE Alu 1 304 0 2283 102 7 0 chr6 77014234 77014537 -105400705 + AluSq SINE Alu 3 307 -6 907 201 45 5 chr6 77014768 77014967 -105400275 + MER3 DNA MER1_type 1 207 -2 379 261 167 28 chr6 77015131 77015311 -105399931 + MIR SINE MIR 58 262 0 2397 75 0 7 chr6 77015670 77015977 -105399265 + AluSc SINE Alu 2 306 -3 1677 145 86 21 chr6 77018013 77018303 -105396939 + AluJo SINE Alu 1 309 -3 408 88 0 0 chr6 77018303 77018360 -105396882 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 366 107 0 0 chr6 77018398 77018454 -105396788 + (CA)n Simple_repeat Simple_repeat 1 56 0 545 165 22 0 chr6 77019455 77019546 -105395696 + MLT1D LTR MaLR 1 93 -412 186 103 0 0 chr6 77019554 77019583 -105395659 + (A)n Simple_repeat Simple_repeat 1 29 0 674 220 29 12 chr6 77019587 77019760 -105395482 + MLT1-int LTR MaLR 1 176 -1195 330 267 78 63 chr6 77019865 77020056 -105395186 + HAL1 LINE L1 940 1133 -1374 1547 241 90 44 chr6 77020093 77020814 -105394428 + HAL1 LINE L1 1074 1827 -680 21 0 0 0 chr6 77021541 77021562 -105393680 + AT_rich Low_complexity Low_complexity 1 21 0 295 355 41 8 chr6 77021775 77021896 -105393346 - L2 LINE L2 -203 3069 2945 664 174 0 0 chr6 77021973 77022082 -105393160 + L1MB1 LINE L1 5506 5614 -557 551 192 9 2 chr6 77022098 77022316 -105392926 + AluJ SINE Alu 12 271 -41 1638 157 63 0 chr6 77022417 77022717 -105392525 + L1MB1 LINE L1 5742 6060 -108 2014 134 6 34 chr6 77022717 77023037 -105392205 + AluSx SINE Alu 1 311 -1 316 319 18 18 chr6 77023215 77023328 -105391914 + L2 LINE L2 3201 3313 0 183 373 13 27 chr6 77023649 77023724 -105391518 - L2 LINE L2 -95 3177 3104 185 289 0 60 chr6 77023854 77023937 -105391305 - L3 LINE CR1 -695 882 805 1646 147 29 62 chr6 77024133 77024439 -105390803 + AluJo SINE Alu 1 296 -16 250 227 207 53 chr6 77025242 77025392 -105389850 - MIR SINE MIR -27 235 63 268 319 14 0 chr6 77025815 77025887 -105389355 - MIR SINE MIR -142 120 48 372 227 104 45 chr6 77026322 77026476 -105388766 - MIR SINE MIR -51 211 49 1838 110 4 0 chr6 77026552 77026797 -105388445 + AluSx SINE Alu 1 246 -66 258 95 0 0 chr6 77026856 77026898 -105388344 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 247 259 122 61 chr6 77027214 77027345 -105387897 + HAL1b LINE L1 751 889 -459 2047 99 3 11 chr6 77027643 77027925 -105387317 - AluSg SINE Alu -28 282 3 1956 87 0 0 chr6 77031568 77031810 -105383432 + AluSc SINE Alu 46 287 -22 234 150 0 0 chr6 77032219 77032259 -105382983 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 288 0 0 0 chr6 77032259 77032291 -105382951 + (TG)n Simple_repeat Simple_repeat 2 33 0 8301 55 11 3 chr6 77032383 77034259 -105380983 + L1PA6 LINE L1 4290 6154 0 25 0 0 0 chr6 77035996 77036021 -105379221 + AT_rich Low_complexity Low_complexity 1 25 0 4658 136 12 31 chr6 77036533 77036630 -105378612 + L1MA8 LINE L1 4613 4710 -1581 2053 150 0 6 chr6 77036630 77036944 -105378298 + AluSx SINE Alu 1 312 0 4658 136 12 31 chr6 77036944 77038314 -105376928 + L1MA8 LINE L1 4710 6048 -243 711 291 0 19 chr6 77038423 77038684 -105376558 + L1M4 LINE L1 2267 2522 -3624 493 199 42 21 chr6 77039095 77039247 -105375995 + L1PA16 LINE L1 5952 6111 -54 236 267 23 0 chr6 77039270 77039356 -105375886 - L1MC4 LINE L1 -1341 6701 6614 2297 104 0 0 chr6 77039538 77039846 -105375396 - AluSg SINE Alu -2 308 1 220 279 161 36 chr6 77040205 77040388 -105374854 - MIR SINE MIR -6 202 3 186 103 0 0 chr6 77040434 77040463 -105374779 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1964 125 4 0 chr6 77040471 77040750 -105374492 - AluSx SINE Alu -22 290 11 347 266 37 115 chr6 77040812 77041030 -105374212 + L2 LINE L2 3036 3236 -36 232 333 12 12 chr6 77041414 77041498 -105373744 + L2 LINE L2 3184 3267 -5 2051 133 0 13 chr6 77041823 77042131 -105373111 + AluSx SINE Alu 1 304 -8 798 73 65 0 chr6 77042239 77042363 -105372879 - L1MB3 LINE L1 -8 6175 6044 21 36 0 0 chr6 77043089 77043117 -105372125 + GC_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr6 77046055 77046099 -105369143 + AT_rich Low_complexity Low_complexity 1 44 0 1370 262 52 80 chr6 77046602 77046853 -105368389 + MLT1A1-int LTR MaLR 650 906 -465 1863 172 40 8 chr6 77046853 77047207 -105368035 + MLT1A1 LTR MaLR 1 365 0 1370 262 52 80 chr6 77047207 77047734 -105367508 + MLT1A1-int LTR MaLR 906 1371 0 378 186 41 138 chr6 77047734 77047879 -105367363 + MLT1D LTR MaLR 1 131 -374 1703 119 4 28 chr6 77047881 77048133 -105367109 + AluSq SINE Alu 1 246 -67 253 191 0 0 chr6 77048133 77048175 -105367067 - AluSp/q SINE Alu -26 277 236 586 229 38 0 chr6 77048186 77048317 -105366925 + MLT1E2 LTR MaLR 491 626 0 396 305 26 52 chr6 77048648 77048802 -105366440 + MIR3 SINE MIR 5 154 -54 424 289 141 0 chr6 77049057 77049178 -105366064 + MIR SINE MIR 5 142 -120 1529 203 52 26 chr6 77049270 77049615 -105365627 + MLT1A2 LTR MaLR 1 354 -20 12746 45 1 0 chr6 77049939 77051509 -105363733 - L1PA5 LINE L1 -1024 5122 3551 7334 45 2 0 chr6 77051509 77052556 -105362686 + L1PA5 LINE L1 5106 6154 0 25 0 0 0 chr6 77052714 77052739 -105362503 + AT_rich Low_complexity Low_complexity 1 25 0 193 224 0 69 chr6 77053057 77053115 -105362127 - L2 LINE L2 -98 3215 3162 448 288 34 20 chr6 77053581 77053727 -105361515 - MIR3 SINE MIR -55 153 6 246 349 48 0 chr6 77054079 77054225 -105361017 + MIR SINE MIR 97 249 -13 497 172 34 10 chr6 77054412 77054539 -105360703 + L1ME3A LINE L1 5833 5962 -208 240 258 17 67 chr6 77054645 77054765 -105360477 + L1ME3A LINE L1 5969 6082 -88 386 151 151 56 chr6 77055811 77055990 -105359252 + Charlie5 DNA MER1_type 2425 2620 0 2360 82 0 0 chr6 77057198 77057492 -105357750 - AluSg SINE Alu -16 294 1 1867 116 52 0 chr6 77058014 77058321 -105356921 + AluSx SINE Alu 1 321 0 823 165 8 8 chr6 77059119 77059252 -105355990 + AluSq/x SINE Alu 1 133 -180 1211 35 0 0 chr6 77059352 77059493 -105355749 + HERVK9 LTR ERVK 427 567 -5349 9247 62 15 1 chr6 77059495 77060662 -105354580 + HERVK9 LTR ERVK 1113 2296 -3620 3941 129 8 2 chr6 77060638 77061225 -105354017 + HERVK9 LTR ERVK 5044 5634 -282 * 2166 111 19 17 chr6 77061250 77061603 -105353639 + HERVK9 LTR ERVK 5635 5916 0 718 135 12 68 chr6 77061606 77061769 -105353473 + MER9 LTR ERVK 3 156 -355 390 80 0 0 chr6 77061871 77061921 -105353321 - THE1B LTR MaLR -314 50 1 1806 132 37 4 chr6 77062939 77063237 -105352005 + AluJb SINE Alu 3 309 0 21 0 0 0 chr6 77063471 77063492 -105351750 + AT_rich Low_complexity Low_complexity 1 21 0 1057 246 103 66 chr6 77063492 77063918 -105351324 - MLT1J1 LTR MaLR 0 446 5 376 250 45 38 chr6 77064175 77064307 -105350935 + L2 LINE L2 3126 3258 -55 289 260 98 41 chr6 77064697 77064820 -105350422 - L2 LINE L2 0 3272 3143 414 0 0 0 chr6 77065136 77065182 -105350060 + (CA)n Simple_repeat Simple_repeat 2 47 0 249 333 56 24 chr6 77065472 77065598 -105349644 - L2 LINE L2 -557 2757 2628 207 209 0 0 chr6 77065899 77065942 -105349300 + T-rich Low_complexity Low_complexity 4 46 0 257 345 35 11 chr6 77066535 77066622 -105348620 - MIR SINE MIR -77 131 43 340 246 132 0 chr6 77066816 77066930 -105348312 - MIR SINE MIR -3 259 131 1069 120 17 26 chr6 77066931 77067108 -105348134 - THE1B LTR MaLR -2 362 197 2291 97 7 3 chr6 77067109 77067408 -105347834 + AluSg SINE Alu 1 300 -10 25 31 0 0 chr6 77068323 77068355 -105346887 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 77068407 77068436 -105346806 + AT_rich Low_complexity Low_complexity 1 29 0 2304 98 0 19 chr6 77069087 77069404 -105345838 + AluSx SINE Alu 1 311 -1 606 256 38 33 chr6 77069804 77069911 -105345331 - MLT1H LTR MaLR -227 322 217 2298 102 0 0 chr6 77069911 77070215 -105345027 + AluSx SINE Alu 1 304 -8 606 256 38 33 chr6 77070215 77070318 -105344924 - MLT1H LTR MaLR -332 217 111 1159 266 112 39 chr6 77071065 77071547 -105343695 - MLT1H LTR MaLR -28 521 5 36 23 0 0 chr6 77071749 77071792 -105343450 + AT_rich Low_complexity Low_complexity 1 43 0 2183 94 3 10 chr6 77072934 77073231 -105342011 - AluY SINE Alu -14 297 3 190 73 49 0 chr6 77073522 77073563 -105341679 + (TA)n Simple_repeat Simple_repeat 2 44 0 275 246 72 0 chr6 77073636 77073705 -105341537 + L2 LINE L2 3240 3313 0 187 237 0 0 chr6 77073703 77073741 -105341501 - MIR SINE MIR -115 147 110 * 287 111 0 37 chr6 77074161 77074215 -105341027 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2807 25 0 0 chr6 77074270 77074587 -105340655 + AluYb8 SINE Alu 1 317 -1 1346 218 87 62 chr6 77075054 77075503 -105339739 - LTR40a LTR ERVL -2 460 1 543 153 0 0 chr6 77075703 77075788 -105339454 + AluS SINE Alu 4 88 -225 22 0 0 0 chr6 77076865 77076887 -105338355 + AT_rich Low_complexity Low_complexity 1 22 0 2755 120 10 2 chr6 77076961 77077354 -105337888 + MSTA LTR MaLR 33 428 0 2604 103 31 5 chr6 77078586 77078974 -105336268 - MER48 LTR ERV1 0 398 1 299 295 8 8 chr6 77079133 77079255 -105335987 + (TA)n Simple_repeat Simple_repeat 1 122 0 545 209 9 0 chr6 77079267 77079377 -105335865 - AluJb SINE Alu -201 111 1 224 312 167 30 chr6 77079449 77079683 -105335559 + L2 LINE L2 2095 2360 -954 2514 116 8 0 chr6 77079694 77080049 -105335193 - THE1C LTR MaLR 0 375 18 682 303 84 4 chr6 77080221 77080459 -105334783 - MIR SINE MIR 0 262 6 988 234 47 29 chr6 77081747 77082125 -105333117 - LTR16C LTR ERVL 0 491 50 288 310 39 0 chr6 77082196 77082325 -105332917 + L1ME2 LINE L1 5808 5941 -223 1661 173 54 7 chr6 77083441 77083736 -105331506 - AluJo SINE Alu -3 309 1 23 86 0 0 chr6 77084338 77084396 -105330846 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr6 77084710 77084732 -105330510 + AT_rich Low_complexity Low_complexity 1 22 0 810 171 16 0 chr6 77084736 77084865 -105330377 - AluJo SINE Alu -133 179 49 34 65 0 0 chr6 77085323 77085385 -105329857 + AT_rich Low_complexity Low_complexity 1 62 0 2348 166 24 9 chr6 77086367 77086824 -105328418 + L1MB8 LINE L1 5714 6177 -1 613 301 89 8 chr6 77088598 77088834 -105326408 - HAL1 LINE L1 -1589 918 664 235 94 0 0 chr6 77088834 77088866 -105326376 - LTR40a LTR ERVL 0 519 488 1952 228 39 58 chr6 77088887 77089401 -105325841 + LTR40a LTR ERVL 14 517 -2 683 313 101 7 chr6 77089406 77089684 -105325558 - HAL1 LINE L1 -1842 665 362 807 264 47 60 chr6 77089685 77089984 -105325258 + L2 LINE L2 3019 3313 0 181 276 17 17 chr6 77090256 77090314 -105324928 - L2 LINE L2 -788 2526 2469 * 503 239 43 8 chr6 77090290 77090407 -105324835 - MIR SINE MIR -140 122 2 394 255 0 0 chr6 77090449 77090547 -105324695 - L2 LINE L2 -1230 2084 1987 700 134 5 34 chr6 77090549 77090737 -105324505 + AluJ SINE Alu 91 312 0 536 238 87 0 chr6 77090781 77090907 -105324335 - L2 LINE L2 -1337 1977 1841 642 145 145 0 chr6 77090913 77091037 -105324205 - MLT1F1 LTR MaLR -13 554 413 2183 108 3 7 chr6 77091074 77091369 -105323873 - AluSq SINE Alu -17 296 3 441 255 41 0 chr6 77091387 77091485 -105323757 - MLT1F LTR MaLR -440 102 1 286 257 79 0 chr6 77091486 77091587 -105323655 - L2 LINE L2 -1471 1843 1735 970 165 6 6 chr6 77094356 77094514 -105320728 - AluJb SINE Alu -3 309 152 237 33 0 0 chr6 77094514 77094544 -105320698 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1817 161 7 0 chr6 77094544 77094824 -105320418 - AluSx SINE Alu -30 282 1 1298 236 82 120 chr6 77095150 77095361 -105319881 + L1MC5 LINE L1 5283 5501 -2460 1166 186 26 117 chr6 77095361 77095738 -105319504 - MER7A DNA MER2_type -1 345 5 1298 236 82 120 chr6 77095738 77096968 -105318274 + L1MC5 LINE L1 5501 6777 -1184 2325 88 0 0 chr6 77096968 77097262 -105317980 + AluSg SINE Alu 5 298 -12 1298 236 82 120 chr6 77097262 77097543 -105317699 + L1MC5 LINE L1 6777 6898 -1063 2039 134 20 0 chr6 77097543 77097835 -105317407 - AluSx SINE Alu -14 298 1 1298 236 82 120 chr6 77097835 77098104 -105317138 + L1MC5 LINE L1 6898 7176 -785 22 0 0 0 chr6 77098254 77098276 -105316966 + AT_rich Low_complexity Low_complexity 1 22 0 2492 102 17 11 chr6 77100036 77100398 -105314844 - THE1B LTR MaLR 0 364 1 314 280 50 10 chr6 77100811 77100911 -105314331 + L2 LINE L2 2471 2574 -740 1160 286 54 23 chr6 77100911 77101486 -105313756 + L2 LINE L2 2719 3313 0 197 394 32 0 chr6 77101730 77101824 -105313418 + MIR SINE MIR 13 109 -153 421 328 128 55 chr6 77102139 77102739 -105312503 + L2 LINE L2 2234 2877 -437 1558 170 0 48 chr6 77102989 77103260 -105311982 - AluJb SINE Alu -20 292 35 4898 193 13 19 chr6 77103286 77104584 -105310658 + L1MA9 LINE L1 4985 6274 -38 1798 173 3 3 chr6 77104601 77104885 -105310357 - AluJo SINE Alu -24 288 5 2668 26 0 0 chr6 77155093 77155402 -105259840 - L1PA3 LINE L1 -65 6090 5782 413 322 39 34 chr6 77156454 77156659 -105258583 - L2 LINE L2 -196 3076 2871 505 277 103 26 chr6 77157180 77157375 -105257867 + MER63A DNA MER1_type 1 210 0 1885 147 14 0 chr6 77157834 77158127 -105257115 + AluSx SINE Alu 1 297 -15 4249 181 47 16 chr6 77161257 77161923 -105253319 - L1MB7 LINE L1 -9 6175 5531 276 30 0 0 chr6 77161923 77161956 -105253286 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4249 181 47 16 chr6 77161956 77162556 -105252686 - L1MB7 LINE L1 -653 5531 4871 197 394 32 0 chr6 77163189 77163283 -105251959 - MIR SINE MIR -153 109 13 1160 286 54 23 chr6 77163527 77164102 -105251140 - L2 LINE L2 0 3313 2719 314 280 50 10 chr6 77164102 77164202 -105251040 - L2 LINE L2 -740 2574 2471 2492 102 17 11 chr6 77164615 77164977 -105250265 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr6 77166738 77166759 -105248483 + AT_rich Low_complexity Low_complexity 1 21 0 1769 180 7 0 chr6 77166944 77167277 -105247965 - AluSx SINE Alu 0 312 1 1363 214 7 7 chr6 77167611 77167896 -105247346 + MLT2D LTR ERVL 1 285 -129 195 309 83 24 chr6 77167896 77167980 -105247262 - L2 LINE L2 -654 2660 2572 626 187 28 0 chr6 77168198 77168305 -105246937 + Tigger3b DNA MER2_type 3 112 -1119 1914 178 50 66 chr6 77168305 77169069 -105246173 + LTR8 LTR ERV1 1 691 0 6438 111 40 56 chr6 77169069 77169175 -105246067 + Tigger3b DNA MER2_type 109 215 -2813 1965 111 9 51 chr6 77169175 77169490 -105245752 + AluSx SINE Alu 1 302 -10 6438 111 40 56 chr6 77169490 77170236 -105245006 + Tigger3b DNA MER2_type 215 941 -2087 1953 152 0 16 chr6 77170236 77170546 -105244696 - AluSx SINE Alu -7 305 1 6438 111 40 56 chr6 77170546 77170833 -105244409 + Tigger3b DNA MER2_type 941 1231 0 1807 172 3 3 chr6 77171222 77171507 -105243735 + AluJo SINE Alu 5 289 -23 4902 193 13 18 chr6 77171524 77172820 -105242422 - L1MA9 LINE L1 -38 6274 4985 1558 170 0 48 chr6 77172846 77173117 -105242125 + AluJb SINE Alu 35 292 -20 849 328 125 52 chr6 77173367 77174077 -105241165 - L2 LINE L2 -437 2877 2059 2261 117 0 3 chr6 77174077 77174386 -105240856 + AluSx SINE Alu 1 308 -4 849 328 125 52 chr6 77174386 77174761 -105240481 - L2 LINE L2 -1255 2059 1713 246 324 106 48 chr6 77174765 77175077 -105240165 + L2 LINE L2 2436 2765 -549 326 264 264 14 chr6 77176576 77176724 -105238518 - MER5A DNA MER1_type -4 185 1 448 288 34 20 chr6 77176725 77176871 -105238371 - MIR3 SINE MIR -55 153 6 246 349 48 0 chr6 77177223 77177369 -105237873 + MIR SINE MIR 97 249 -13 497 172 34 10 chr6 77177556 77177683 -105237559 + L1ME3A LINE L1 5833 5962 -208 247 250 17 67 chr6 77177789 77177909 -105237333 + L1ME3A LINE L1 5969 6082 -88 330 309 36 0 chr6 77179071 77179210 -105236032 - L1ME3A LINE L1 -224 5946 5803 988 234 47 29 chr6 77179276 77179654 -105235588 + LTR16C LTR ERVL 50 491 0 682 303 84 4 chr6 77180942 77181180 -105234062 + MIR SINE MIR 6 262 0 2514 116 8 0 chr6 77181352 77181707 -105233535 + THE1C LTR MaLR 18 375 0 224 312 167 30 chr6 77181718 77181952 -105233290 - L2 LINE L2 -954 2360 2095 728 159 0 0 chr6 77182024 77182137 -105233105 + AluJb SINE Alu 1 113 -199 396 240 0 0 chr6 77182147 77182268 -105232974 + (TA)n Simple_repeat Simple_repeat 1 121 0 2630 101 31 5 chr6 77182428 77182816 -105232426 + MER48 LTR ERV1 1 398 0 372 209 190 61 chr6 77187721 77187836 -105227406 - MIR SINE MIR 0 262 119 2371 104 5 62 chr6 77187836 77188015 -105227227 - THE1B LTR MaLR -2 362 215 2308 96 7 0 chr6 77188015 77188308 -105226934 + AluSg SINE Alu 1 295 -15 2371 104 5 62 chr6 77188308 77188512 -105226730 - THE1B LTR MaLR -149 215 1 372 209 190 61 chr6 77188512 77188559 -105226683 - MIR SINE MIR -143 119 79 1806 132 37 4 chr6 77189530 77189828 -105225414 + AluJb SINE Alu 3 309 0 21 0 0 0 chr6 77190062 77190083 -105225159 + AT_rich Low_complexity Low_complexity 1 21 0 1057 246 103 66 chr6 77190083 77190509 -105224733 - MLT1J1 LTR MaLR 0 446 5 376 250 45 38 chr6 77190765 77190897 -105224345 + L2 LINE L2 3126 3258 -55 414 0 0 0 chr6 77191630 77191676 -105223566 + (CA)n Simple_repeat Simple_repeat 2 47 0 249 333 56 24 chr6 77191966 77192092 -105223150 - L2 LINE L2 -557 2757 2628 207 209 0 0 chr6 77192392 77192435 -105222807 + T-rich Low_complexity Low_complexity 4 46 0 276 392 56 8 chr6 77193028 77193153 -105222089 - MIR3 SINE MIR -77 131 1 2029 136 0 16 chr6 77193349 77193657 -105221585 - AluSx SINE Alu -5 307 5 314 274 16 73 chr6 77193877 77194001 -105221241 - L1MC4 LINE L1 -1311 6731 6615 227 278 0 0 chr6 77194002 77194056 -105221186 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 244 259 71 0 chr6 77194059 77194144 -105221098 + L1MC4 LINE L1 6613 6703 -1339 * 2651 271 46 12 chr6 77194142 77195027 -105220215 + L1MEc LINE L1 123 1037 -5359 378 167 0 0 chr6 77195031 77195091 -105220151 - MER58 DNA MER1_type -4 2416 2357 372 257 46 9 chr6 77195099 77195208 -105220034 - MER58 DNA MER1_type -102 113 1 3468 258 82 15 chr6 77195208 77196712 -105218530 + L1MEc LINE L1 1030 2591 -3624 635 182 0 0 chr6 77197124 77197234 -105218008 + L1PA16 LINE L1 5952 6061 -105 317 183 0 0 chr6 77197235 77197295 -105217947 + L1PA16 LINE L1 6098 6157 -9 236 267 23 0 chr6 77197300 77197386 -105217856 - L1MC4 LINE L1 -1341 6701 6614 2297 104 0 0 chr6 77197568 77197876 -105217366 - AluSg SINE Alu -2 308 1 220 279 161 36 chr6 77198235 77198418 -105216824 - MIR SINE MIR -6 202 3 186 103 0 0 chr6 77198464 77198493 -105216749 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1964 125 4 0 chr6 77198501 77198780 -105216462 - AluSx SINE Alu -22 290 11 347 266 37 115 chr6 77198842 77199060 -105216182 + L2 LINE L2 3036 3236 -36 232 333 12 12 chr6 77199444 77199528 -105215714 + L2 LINE L2 3184 3267 -5 2051 133 0 13 chr6 77199853 77200161 -105215081 + AluSx SINE Alu 1 304 -8 798 73 65 0 chr6 77200269 77200393 -105214849 - L1MB3 LINE L1 -8 6175 6044 305 280 175 92 chr6 77201091 77201405 -105213837 - L1M2 LINE L1 -5612 1237 898 23 68 0 0 chr6 77204083 77204127 -105211115 + AT_rich Low_complexity Low_complexity 1 44 0 768 144 8 15 chr6 77204350 77204482 -105210760 + FLAM_C SINE Alu 1 131 -2 1485 148 4 9 chr6 77204989 77205219 -105210023 - AluSx SINE Alu -83 229 1 1866 116 52 0 chr6 77206016 77206323 -105208919 - AluSx SINE Alu 0 321 1 2369 81 0 0 chr6 77206845 77207140 -105208102 + AluSg SINE Alu 1 295 -15 840 144 105 18 chr6 77208348 77208577 -105206665 - Charlie5 DNA MER1_type 0 2620 2372 1940 159 3 7 chr6 77208588 77208890 -105206352 - AluJb SINE Alu -11 301 1 1053 150 5 35 chr6 77208927 77209127 -105206115 - Charlie5 DNA MER1_type -2418 194 1 429 303 87 50 chr6 77209761 77209979 -105205263 + Charlie8 DNA MER1_type 13 238 -2179 1488 245 171 9 chr6 77210485 77211061 -105204181 - L2 LINE L2 0 3313 2653 351 191 129 65 chr6 77211236 77211467 -105203775 - MLT1J LTR MaLR -238 273 2 237 313 24 0 chr6 77212605 77212688 -105202554 - MLT1H-int LTR MaLR -1650 85 1 190 73 49 0 chr6 77212781 77212822 -105202420 + (TA)n Simple_repeat Simple_repeat 2 44 0 275 246 72 0 chr6 77212895 77212964 -105202278 + L2 LINE L2 3240 3313 0 187 237 0 0 chr6 77212962 77213000 -105202242 - MIR SINE MIR -115 147 110 * 287 111 0 37 chr6 77213419 77213473 -105201769 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2833 22 0 0 chr6 77213528 77213845 -105201397 + AluYb8 SINE Alu 1 317 -1 1529 212 89 62 chr6 77214312 77214760 -105200482 - LTR40a LTR ERVL -2 460 1 264 287 115 12 chr6 77214837 77214956 -105200286 + L1ME4a LINE L1 5689 5794 -327 2270 109 0 0 chr6 77214956 77215258 -105199984 + AluSx SINE Alu 1 302 -10 264 287 115 12 chr6 77215258 77215382 -105199860 + L1ME4a LINE L1 5794 5957 -164 25 31 0 0 chr6 77216173 77216205 -105199037 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 77216257 77216286 -105198956 + AT_rich Low_complexity Low_complexity 1 29 0 2304 98 0 19 chr6 77216937 77217254 -105197988 + AluSx SINE Alu 1 311 -1 606 256 38 33 chr6 77217654 77217761 -105197481 - MLT1H LTR MaLR -227 322 217 2283 105 0 0 chr6 77217761 77218065 -105197177 + AluSx SINE Alu 1 304 -8 606 256 38 33 chr6 77218065 77218168 -105197074 - MLT1H LTR MaLR -332 217 111 1159 266 112 39 chr6 77218915 77219397 -105195845 - MLT1H LTR MaLR -28 521 5 36 23 0 0 chr6 77219599 77219642 -105195600 + AT_rich Low_complexity Low_complexity 1 43 0 482 221 29 79 chr6 77220746 77220784 -105194458 + MER94 DNA DNA 1 39 -95 2362 71 7 3 chr6 77220784 77221080 -105194162 - AluY SINE Alu -14 297 1 482 221 29 79 chr6 77221080 77221181 -105194061 + MER94 DNA DNA 39 133 -1 526 226 0 0 chr6 77221321 77221414 -105193828 - MLT1H LTR MaLR -198 351 259 254 343 0 0 chr6 77222257 77222330 -105192912 - MER5C DNA MER1_type -249 75 3 227 185 46 0 chr6 77222744 77222809 -105192433 + L1MC4 LINE L1 6636 6703 -1339 2086 112 10 3 chr6 77222816 77223111 -105192131 - AluSq SINE Alu -16 297 1 1203 123 0 0 chr6 77223216 77223387 -105191855 - AluSp SINE Alu -3 310 140 2381 97 0 0 chr6 77223609 77223909 -105191333 + AluSq SINE Alu 2 301 -12 271 317 158 26 chr6 77225136 77225515 -105189727 + HAL1b LINE L1 349 777 -571 817 270 34 5 chr6 77225979 77226002 -105189240 - L1MEc LINE L1 -3689 2526 2505 3805 165 29 23 chr6 77226002 77226580 -105188662 + MER44D DNA MER2_type 1 457 -2030 1419 158 34 60 chr6 77226580 77226878 -105188364 + AluJo SINE Alu 1 290 -22 3805 165 29 23 chr6 77226878 77227028 -105188214 + MER44D DNA MER2_type 457 605 0 817 270 34 5 chr6 77227028 77227381 -105187861 - L1MEc LINE L1 -3710 2505 2178 229 261 108 0 chr6 77227434 77227499 -105187743 - L1MEc LINE L1 -5491 714 643 520 224 36 55 chr6 77227611 77227830 -105187412 - L1MC5 LINE L1 -230 7731 7517 336 203 43 0 chr6 77228040 77228109 -105187133 - L1MC5 LINE L1 -728 7233 7162 2090 103 0 4 chr6 77228111 77228382 -105186860 + AluSq SINE Alu 1 270 -43 1388 234 80 119 chr6 77228549 77228818 -105186424 - L1MC5 LINE L1 -785 7176 6898 2011 134 20 0 chr6 77228818 77229110 -105186132 + AluSx SINE Alu 1 298 -14 1388 234 80 119 chr6 77229110 77229392 -105185850 - L1MC5 LINE L1 -1063 6898 6606 2282 89 0 0 chr6 77229392 77229685 -105185557 - AluSg SINE Alu -13 297 5 1388 234 80 119 chr6 77229685 77230915 -105184327 - L1MC5 LINE L1 -1355 6606 5501 1161 186 26 117 chr6 77230915 77231292 -105183950 + MER7A DNA MER2_type 5 345 -1 1388 234 80 119 chr6 77231292 77231503 -105183739 - L1MC5 LINE L1 -2460 5501 5283 1788 161 7 0 chr6 77231829 77232139 -105183103 + AluSx SINE Alu 1 312 0 957 165 6 6 chr6 77232139 77232297 -105182945 + AluJb SINE Alu 152 309 -3 22 88 0 0 chr6 77232297 77232354 -105182888 + AT_rich Low_complexity Low_complexity 1 57 0 554 173 79 24 chr6 77232897 77233024 -105182218 + MER58B DNA MER1_type 191 324 -17 3695 94 0 16 chr6 77233065 77233576 -105181666 - MER9 LTR ERVK -8 503 1 3978 117 11 6 chr6 77233576 77234541 -105180701 - HERVK9 LTR ERVK 0 8032 5044 * 9335 58 15 0 chr6 77234517 77235683 -105179559 - HERVK9 LTR ERVK -3620 2296 1113 4091 78 12 21 chr6 77235684 77236257 -105178985 - HERVK9 LTR ERVK -5348 568 1 3619 82 26 6 chr6 77236257 77236758 -105178484 - MER9 LTR ERVK 0 511 1 5884 136 20 25 chr6 77236846 77238435 -105176807 - L1MA7 LINE L1 -5 6286 4709 2103 134 0 6 chr6 77238435 77238749 -105176493 - AluSx SINE Alu 0 312 1 5884 136 20 25 chr6 77238749 77238846 -105176396 - L1MA7 LINE L1 -1582 4709 4613 25 0 0 0 chr6 77239358 77239383 -105175859 + AT_rich Low_complexity Low_complexity 1 25 0 8309 54 4 21 chr6 77241120 77242996 -105172246 - L1PA6 LINE L1 0 6154 4290 288 0 0 0 chr6 77243088 77243120 -105172122 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 150 0 0 chr6 77243120 77243160 -105172082 + (TATATG)n Simple_repeat Simple_repeat 4 43 0 1927 87 0 0 chr6 77243569 77243811 -105171431 - AluSc SINE Alu -22 287 46 2008 99 3 11 chr6 77247456 77247738 -105167504 + AluSg SINE Alu 3 282 -28 255 259 122 61 chr6 77248036 77248167 -105167075 - HAL1b LINE L1 -459 889 751 258 95 0 0 chr6 77248483 77248525 -105166717 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 1807 110 4 0 chr6 77248584 77248829 -105166413 - AluSx SINE Alu -66 246 1 373 227 104 45 chr6 77248905 77249059 -105166183 + MIR SINE MIR 49 211 -51 440 314 63 11 chr6 77249493 77249668 -105165574 + MIR SINE MIR 48 231 -31 249 227 207 53 chr6 77250007 77250157 -105165085 + MIR SINE MIR 63 235 -27 1617 147 29 62 chr6 77250960 77251266 -105163976 - AluJo SINE Alu -16 296 1 189 289 0 60 chr6 77251461 77251544 -105163698 + L3 LINE CR1 805 882 -695 183 373 13 27 chr6 77251674 77251749 -105163493 + L2 LINE L2 3104 3177 -95 322 319 18 18 chr6 77252070 77252183 -105163059 - L2 LINE L2 0 3313 3201 1976 125 6 61 chr6 77252361 77252690 -105162552 - AluSx SINE Alu -1 311 1 2413 159 46 0 chr6 77252690 77253125 -105162117 - L1MB1 LINE L1 -108 6060 5606 775 161 15 0 chr6 77253125 77253255 -105161987 - AluJ SINE Alu -9 303 172 678 181 0 0 chr6 77253259 77253375 -105161867 - AluJ SINE Alu -185 127 12 666 174 0 0 chr6 77253391 77253500 -105161742 - L1MB1 LINE L1 -557 5614 5506 298 355 41 8 chr6 77253577 77253698 -105161544 + L2 LINE L2 2945 3069 -203 21 0 0 0 chr6 77253911 77253932 -105161310 + AT_rich Low_complexity Low_complexity 1 21 0 1881 234 105 108 chr6 77254659 77255826 -105159416 - HAL1 LINE L1 -680 1827 664 235 94 0 0 chr6 77255826 77255858 -105159384 - LTR40b LTR ERVL 0 462 431 1952 228 39 58 chr6 77255879 77256393 -105158849 + LTR40a LTR ERVL 14 517 -2 707 309 101 7 chr6 77256398 77256676 -105158566 - HAL1 LINE L1 -1842 665 362 817 264 47 60 chr6 77256677 77256976 -105158266 + L2 LINE L2 3019 3313 0 501 239 43 8 chr6 77257282 77257399 -105157843 - MIR SINE MIR -140 122 2 388 255 0 0 chr6 77257441 77257539 -105157703 - L2 LINE L2 -1230 2084 1987 691 134 5 34 chr6 77257541 77257729 -105157513 + AluJ SINE Alu 91 312 0 536 238 87 0 chr6 77257773 77257899 -105157343 - L2 LINE L2 -1337 1977 1841 645 145 145 0 chr6 77257905 77258029 -105157213 - MLT1F1 LTR MaLR -13 554 413 2149 108 3 7 chr6 77258066 77258361 -105156881 - AluSq SINE Alu -17 296 3 437 255 41 0 chr6 77258379 77258477 -105156765 - MLT1F LTR MaLR -440 102 1 203 211 105 13 chr6 77258478 77258554 -105156688 - L2 LINE L2 -1471 1843 1761 2841 269 99 43 chr6 77258554 77259183 -105156059 - L2 LINE L2 -1809 1505 790 1634 122 4 22 chr6 77259183 77259454 -105155788 + L1PA11 LINE L1 5908 6173 -1 2841 269 99 43 chr6 77259454 77259905 -105155337 - L2 LINE L2 -2524 790 365 2338 231 42 12 chr6 77260121 77260718 -105154524 - L1MC4 LINE L1 -139 7903 7289 1978 229 114 12 chr6 77260737 77261309 -105153933 - L1MC4 LINE L1 -954 7088 6459 186 133 0 0 chr6 77261965 77261995 -105153247 + (T)n Simple_repeat Simple_repeat 1 30 0 906 261 66 113 chr6 77262063 77262751 -105152491 - MER77 LTR ERV1 -6 599 41 2740 120 10 2 chr6 77265059 77265452 -105149790 - MSTA LTR MaLR 0 428 33 22 0 0 0 chr6 77265526 77265548 -105149694 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr6 77266535 77266581 -105148661 + AT_rich Low_complexity Low_complexity 1 46 0 34 65 0 0 chr6 77267424 77267486 -105147756 + AT_rich Low_complexity Low_complexity 1 62 0 800 171 16 0 chr6 77267944 77268073 -105147169 + AluJo SINE Alu 49 179 -133 22 0 0 0 chr6 77268077 77268099 -105147143 + AT_rich Low_complexity Low_complexity 1 22 0 23 86 0 0 chr6 77268413 77268471 -105146771 + AT_rich Low_complexity Low_complexity 1 58 0 1687 166 54 7 chr6 77269073 77269368 -105145874 + AluJo SINE Alu 1 309 -3 32 75 0 0 chr6 77270594 77270661 -105144581 + AT_rich Low_complexity Low_complexity 1 67 0 260 240 253 0 chr6 77271792 77271867 -105143375 - L2 LINE L2 -20 3293 3200 23 33 0 0 chr6 77272124 77272154 -105143088 + AT_rich Low_complexity Low_complexity 1 30 0 2249 132 9 12 chr6 77272199 77272532 -105142710 - MER1B DNA MER1_type 0 339 8 194 240 20 0 chr6 77272836 77272886 -105142356 + L2 LINE L2 3263 3313 0 282 276 133 0 chr6 77273545 77273643 -105141599 + MIR3 SINE MIR 92 202 -6 2115 114 7 0 chr6 77274353 77274642 -105140600 + AluSq SINE Alu 1 291 -22 937 98 0 8 chr6 77274682 77274815 -105140427 + AluSg/x SINE Alu 174 305 -5 468 291 57 64 chr6 77275756 77276145 -105139097 + L1ME4a LINE L1 5612 5997 -124 788 203 13 0 chr6 77276242 77276395 -105138847 - Tigger2 DNA MER2_type -10 2708 2554 * 835 146 169 0 chr6 77276392 77276570 -105138672 - Tigger2 DNA MER2_type -2505 213 6 1026 238 53 14 chr6 77277202 77277555 -105137687 - LTR43 LTR ERV1 -25 577 179 245 224 15 0 chr6 77277659 77277726 -105137516 - LTR60 LTR ERV1 -518 68 1 25 31 0 0 chr6 77278047 77278079 -105137163 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 77278675 77278700 -105136542 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr6 77279773 77279805 -105135437 + AT_rich Low_complexity Low_complexity 1 32 0 296 306 54 60 chr6 77280364 77280733 -105134509 + L1ME4a LINE L1 5316 5682 -439 356 213 73 73 chr6 77281396 77281477 -105133765 + L1ME4a LINE L1 5742 5822 -299 2347 82 0 3 chr6 77281477 77281781 -105133461 + AluSx SINE Alu 1 303 -9 356 213 73 73 chr6 77281781 77281863 -105133379 + L1ME4a LINE L1 5821 5905 -216 729 220 65 24 chr6 77282055 77282223 -105133019 + FAM SINE Alu 1 175 0 32 26 0 0 chr6 77282296 77282335 -105132907 + AT_rich Low_complexity Low_complexity 1 39 0 241 287 128 21 chr6 77283045 77283139 -105132103 - L2 LINE L2 0 3313 3210 4596 68 8 3 chr6 77283345 77283952 -105131290 - L1PA7 LINE L1 -1 6153 5544 29591 127 18 62 chr6 77283964 77287007 -105128235 - L1PA7 LINE L1 -743 5403 2719 189 0 0 0 chr6 77287007 77287028 -105128214 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 29591 127 18 62 chr6 77287028 77289622 -105125620 - L1PA7 LINE L1 -3427 2719 13 239 352 203 8 chr6 77289647 77289775 -105125467 + L2 LINE L2 3116 3268 -4 29 0 0 0 chr6 77291137 77291166 -105124076 + AT_rich Low_complexity Low_complexity 1 29 0 2008 232 72 35 chr6 77291223 77292160 -105123082 - L1ME3A LINE L1 -77 6085 5152 279 234 234 9 chr6 77292248 77292359 -105122883 + L1 LINE L1 4901 5036 -1110 1387 230 57 92 chr6 77292367 77292401 -105122841 - L1MC4 LINE L1 -13 8029 7995 2002 86 68 7 chr6 77292401 77292681 -105122561 + AluSq SINE Alu 1 297 -16 1387 230 57 92 chr6 77292681 77293242 -105122000 - L1MC4 LINE L1 -47 7995 7455 572 244 53 43 chr6 77293241 77293544 -105121698 - L1ME3A LINE L1 -2700 3446 3141 * 1137 217 19 0 chr6 77294068 77294275 -105120967 - MER58A DNA MER1_type -12 212 2 291 154 0 0 chr6 77294412 77294477 -105120765 + T-rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr6 77295288 77295310 -105119932 + AT_rich Low_complexity Low_complexity 1 22 0 1360 201 96 65 chr6 77295607 77296055 -105119187 - LTR40b LTR ERVL 0 462 1 537 167 0 0 chr6 77296456 77296546 -105118696 - MER53 DNA DNA 0 189 100 771 181 23 0 chr6 77296858 77296991 -105118251 + AluJo SINE Alu 1 136 -176 740 254 48 19 chr6 77297301 77297510 -105117732 - MIR SINE MIR -5 257 43 4368 172 40 16 chr6 77298022 77298976 -105116266 - L1MB5 LINE L1 -35 6139 5164 1804 156 28 59 chr6 77299361 77299719 -105115523 - MER7A DNA MER2_type 0 346 2 250 302 0 35 chr6 77299775 77299861 -105115381 - L1ME2 LINE L1 -116 6117 6035 1556 239 108 4 chr6 77299882 77300334 -105114908 - L1ME2 LINE L1 -284 5949 5451 2260 230 81 62 chr6 77300356 77301000 -105114242 - L1ME2 LINE L1 -830 5385 4712 392 83 17 17 chr6 77301000 77301060 -105114182 + U7 snRNA snRNA 1 60 -3 2260 230 81 62 chr6 77301060 77301438 -105113804 - L1ME2 LINE L1 -1503 4712 4343 277 229 0 0 chr6 77301432 77301493 -105113749 - L1ME2 LINE L1 -3475 2740 2680 * 989 239 109 76 chr6 77301497 77302167 -105113075 - L1ME2 LINE L1 -4800 1596 905 * 2277 208 85 16 chr6 77302158 77302710 -105112532 + L1MCa LINE L1 19 608 -5818 5340 149 30 8 chr6 77302732 77303656 -105111586 + L1MC2 LINE L1 5400 6344 0 321 267 33 8 chr6 77303640 77303760 -105111482 - L1ME2 LINE L1 -5457 939 817 * 303 314 124 65 chr6 77303961 77304130 -105111112 + MER91A DNA MER1_type 17 195 -1 2444 74 3 3 chr6 77304232 77304541 -105110701 - AluY SINE Alu -2 309 1 930 176 0 0 chr6 77304959 77305112 -105110130 + AluJb SINE Alu 5 157 -155 2188 120 3 0 chr6 77305115 77305424 -105109818 - AluSq SINE Alu -3 310 1 12895 131 46 6 chr6 77305474 77307583 -105107659 + Tigger1 DNA MER2_type 224 2417 -1 21 0 0 0 chr6 77307734 77307755 -105107487 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 77308406 77308437 -105106805 + AT_rich Low_complexity Low_complexity 1 31 0 505 261 36 29 chr6 77308645 77308783 -105106459 + MIR SINE MIR 13 151 -111 221 286 36 121 chr6 77309526 77309618 -105105624 - L2 LINE L2 -8 3305 3227 2217 105 0 3 chr6 77309618 77309923 -105105319 - AluSq SINE Alu -9 304 1 221 286 36 121 chr6 77309923 77309970 -105105272 - L2 LINE L2 -86 3227 3178 695 211 184 19 chr6 77310768 77311034 -105104208 + L1ME2 LINE L1 5855 6164 0 459 92 0 0 chr6 77314445 77314510 -105100732 + (CA)n Simple_repeat Simple_repeat 2 66 0 2292 73 44 3 chr6 77316409 77316726 -105098516 - L1PA7 LINE L1 -2 6152 5823 29 47 0 0 chr6 77316878 77316921 -105098321 + AT_rich Low_complexity Low_complexity 1 43 0 229 292 10 69 chr6 77317231 77317433 -105097809 + L1M4 LINE L1 3495 3684 -2462 2334 71 0 7 chr6 77317487 77317781 -105097461 + AluY SINE Alu 1 292 -19 24 0 0 0 chr6 77318252 77318276 -105096966 + AT_rich Low_complexity Low_complexity 1 24 0 941 151 7 13 chr6 77318306 77318478 -105096764 + AluSg/x SINE Alu 129 299 0 8173 120 21 12 chr6 77318480 77319591 -105095651 - HSMAR2 DNA Mariner -19 1283 157 2130 86 65 0 chr6 77319591 77319882 -105095360 - AluY SINE Alu -1 310 1 8173 120 21 12 chr6 77319882 77320041 -105095201 - HSMAR2 DNA Mariner -1145 157 1 2250 110 0 0 chr6 77320357 77320665 -105094577 + AluY SINE Alu 1 308 -3 870 235 21 4 chr6 77321715 77321949 -105093293 + L1MB8 LINE L1 5919 6156 -22 244 0 0 53 chr6 77321949 77321987 -105093255 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 1975 130 30 3 chr6 77322019 77322318 -105092924 - AluJb SINE Alu -5 307 1 1756 162 56 6 chr6 77323055 77323376 -105091866 + MER1B DNA MER1_type 1 337 0 2401 84 0 0 chr6 77324641 77324940 -105090302 - AluSc SINE Alu -10 299 1 28 0 0 0 chr6 77325479 77325507 -105089735 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 77325915 77325938 -105089304 + AT_rich Low_complexity Low_complexity 1 23 0 579 29 0 0 chr6 77326499 77326568 -105088674 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 810 249 37 14 chr6 77326992 77327209 -105088033 - MER58A DNA MER1_type -2 222 1 242 359 107 19 chr6 77327238 77327397 -105087845 + L2 LINE L2 436 608 -2706 2464 48 0 3 chr6 77327420 77327714 -105087528 + AluY SINE Alu 1 293 -18 2616 42 0 3 chr6 77328025 77328331 -105086911 - AluY SINE Alu -6 305 1 22 0 0 0 chr6 77328901 77328923 -105086319 + AT_rich Low_complexity Low_complexity 1 22 0 666 355 132 20 chr6 77329073 77329761 -105085481 + L2 LINE L2 1912 2676 -638 261 0 0 0 chr6 77329955 77329984 -105085258 + (CA)n Simple_repeat Simple_repeat 1 29 0 740 142 9 9 chr6 77330252 77330365 -105084877 - FRAM SINE Alu -24 152 40 325 317 169 29 chr6 77330365 77330608 -105084634 + L2 LINE L2 2215 2491 -823 22 80 0 0 chr6 77330824 77330874 -105084368 + AT_rich Low_complexity Low_complexity 1 50 0 324 284 165 31 chr6 77331623 77331817 -105083425 + MIR SINE MIR 17 236 -26 1595 177 6 60 chr6 77331869 77331965 -105083277 + AluJb SINE Alu 1 101 -211 2201 85 39 0 chr6 77331965 77332246 -105082996 + AluSp SINE Alu 3 294 -19 1595 177 6 60 chr6 77332246 77332466 -105082776 + AluJb SINE Alu 101 300 -12 2337 107 0 0 chr6 77332476 77332786 -105082456 + AluSq SINE Alu 2 311 -2 2160 118 0 10 chr6 77333037 77333333 -105081909 + AluSx SINE Alu 1 293 -19 625 262 122 0 chr6 77333394 77333558 -105081684 - MIR SINE MIR 0 262 79 1059 210 13 36 chr6 77335105 77335329 -105079913 - MER20 DNA MER1_type 0 219 1 180 234 31 47 chr6 77336145 77336209 -105079033 - MIR3 SINE MIR -10 198 136 37 0 0 0 chr6 77336620 77336657 -105078585 + AT_rich Low_complexity Low_complexity 1 37 0 255 293 156 45 chr6 77336681 77337104 -105078138 + L1MC4a LINE L1 5441 5910 -1898 13903 130 51 10 chr6 77337174 77339034 -105076208 - Tigger1 DNA MER2_type 0 2418 443 1531 201 10 7 chr6 77339034 77339327 -105075915 + AluJo SINE Alu 1 294 -18 13903 130 51 10 chr6 77339327 77339789 -105075453 - Tigger1 DNA MER2_type -1975 443 1 2293 112 0 3 chr6 77340169 77340474 -105074768 - AluSg SINE Alu -6 304 1 23 68 0 0 chr6 77341439 77341483 -105073759 + AT_rich Low_complexity Low_complexity 1 44 0 736 259 47 21 chr6 77342067 77342303 -105072939 - L2 LINE L2 -1358 1956 1715 2187 104 17 0 chr6 77342332 77342630 -105072612 - AluSx SINE Alu -9 303 1 707 178 22 0 chr6 77342673 77342808 -105072434 - Charlie2a DNA MER1_type -1230 1632 1495 409 250 8 74 chr6 77342806 77342964 -105072278 - Charlie2a DNA MER1_type -2483 299 104 * 1659 180 44 0 chr6 77342964 77343259 -105071983 - AluJo SINE Alu -4 308 1 409 250 8 74 chr6 77343259 77343337 -105071905 - Charlie2a DNA MER1_type -2678 104 22 27 49 0 0 chr6 77343447 77343488 -105071754 + AT_rich Low_complexity Low_complexity 1 41 0 2104 129 19 13 chr6 77343678 77343988 -105071254 + AluSx SINE Alu 1 312 0 274 230 230 32 chr6 77345008 77345120 -105070122 - MIR3 SINE MIR -24 184 43 2407 95 0 0 chr6 77345120 77345425 -105069817 + AluSq SINE Alu 3 307 -6 274 230 230 32 chr6 77345425 77345438 -105069804 - MIR3 SINE MIR -165 43 34 246 320 68 39 chr6 77345502 77345605 -105069637 + L2 LINE L2 3141 3246 -26 191 263 105 70 chr6 77345650 77345764 -105069478 + L3 LINE CR1 1453 1570 -7 1798 157 6 35 chr6 77346238 77346550 -105068692 + AluJb SINE Alu 5 307 -5 2360 95 0 0 chr6 77346865 77347169 -105068073 + AluSq SINE Alu 1 304 -9 28 105 0 0 chr6 77348453 77348558 -105066684 + AT_rich Low_complexity Low_complexity 1 105 0 24 67 0 0 chr6 77348975 77349020 -105066222 + AT_rich Low_complexity Low_complexity 1 45 0 508 254 8 8 chr6 77349502 77349632 -105065610 - LTR67 LTR ERVL 0 557 428 1611 137 82 4 chr6 77350208 77350464 -105064778 + AluJo SINE Alu 1 276 -36 247 337 40 20 chr6 77350573 77350674 -105064568 + MER5B DNA MER1_type 29 131 -47 25 0 0 0 chr6 77350915 77350940 -105064302 + AT_rich Low_complexity Low_complexity 1 25 0 858 227 80 11 chr6 77351164 77351467 -105063775 - LTR40b LTR ERVL -3 460 148 667 281 34 46 chr6 77351836 77352160 -105063082 - ERVL LTR ERVL -1112 4652 4333 370 279 91 26 chr6 77352211 77352365 -105062877 - ERVL LTR ERVL -1443 4211 4048 1393 254 95 30 chr6 77352386 77352851 -105062391 + MLT1F1 LTR MaLR 71 565 -2 333 0 0 0 chr6 77352890 77352927 -105062315 + (T)n Simple_repeat Simple_repeat 1 37 0 1148 153 0 0 chr6 77353120 77353283 -105061959 + AluSx SINE Alu 1 163 -149 2089 108 47 0 chr6 77353592 77353888 -105061354 - AluSx SINE Alu -2 310 1 372 307 70 0 chr6 77353928 77354042 -105061200 - ERVL LTR ERVL -2320 3444 3323 2423 50 0 0 chr6 77355389 77355706 -105059536 - AluY SINE Alu 0 317 1 426 251 68 48 chr6 77356396 77356647 -105058595 - L1ME LINE L1 -531 5622 5367 2652 32 3 0 chr6 77356677 77356986 -105058256 - AluY SINE Alu -1 310 1 1869 119 93 4 chr6 77356988 77357266 -105057976 - AluSq SINE Alu -10 303 1 806 249 49 42 chr6 77357437 77357866 -105057376 - L1ME LINE L1 -965 5164 4733 415 270 56 77 chr6 77357900 77358055 -105057187 - L1ME LINE L1 -1798 4331 4174 1738 122 80 0 chr6 77358055 77358318 -105056924 - AluSg SINE Alu -22 288 5 415 270 56 77 chr6 77358318 77358472 -105056770 - L1ME LINE L1 -1955 4174 4010 521 281 103 51 chr6 77358842 77359110 -105056132 - L1ME LINE L1 -2179 3950 3697 1744 102 0 0 chr6 77359110 77359335 -105055907 - AluSg SINE Alu -85 225 1 521 281 103 51 chr6 77359335 77359781 -105055461 - L1ME LINE L1 -2432 3697 3209 1749 81 18 0 chr6 77359781 77360002 -105055240 - AluSg/x SINE Alu -3 309 85 521 281 103 51 chr6 77360002 77360058 -105055184 - L1ME LINE L1 -2920 3209 3157 1132 102 76 22 chr6 77360058 77360283 -105054959 + L1MA8 LINE L1 6051 6287 -4 725 211 5 63 chr6 77360698 77360888 -105054354 - AluJo SINE Alu -13 299 121 250 280 11 0 chr6 77360893 77360986 -105054256 - L1ME LINE L1 -5063 1056 963 2316 111 0 0 chr6 77360986 77361293 -105053949 - AluSx SINE Alu -5 307 1 2051 144 3 3 chr6 77361346 77361705 -105053537 - AluSx SINE Alu 0 359 1 1821 156 31 3 chr6 77361768 77362057 -105053185 + AluJo SINE Alu 1 297 -15 1985 150 0 0 chr6 77362215 77362501 -105052741 + AluSx SINE Alu 7 292 -20 464 114 0 14 chr6 77362502 77362572 -105052670 + AluSc SINE Alu 81 149 -160 253 279 57 8 chr6 77362675 77362797 -105052445 - L1ME LINE L1 -5988 131 4 185 108 27 0 chr6 77362804 77362841 -105052401 + (TG)n Simple_repeat Simple_repeat 1 38 0 339 289 139 40 chr6 77363860 77363989 -105051253 - MIR SINE MIR -41 221 69 1689 182 136 29 chr6 77363989 77364445 -105050797 - MLT1D LTR MaLR 0 505 1 339 289 139 40 chr6 77364445 77364488 -105050754 - MIR SINE MIR -193 69 32 5713 109 36 0 chr6 77364681 77365711 -105049531 - L1PA16 LINE L1 -13 6153 5106 189 0 0 0 chr6 77365711 77365732 -105049510 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5713 109 36 0 chr6 77365732 77365964 -105049278 - L1PA16 LINE L1 -1060 5106 4884 699 219 0 0 chr6 77365973 77366096 -105049146 - FLAM_A SINE Alu -10 123 1 22 0 0 0 chr6 77366452 77366474 -105048768 + AT_rich Low_complexity Low_complexity 1 22 0 4519 139 35 37 chr6 77367224 77368039 -105047203 + L1MB4 LINE L1 5275 6092 -88 2067 123 10 3 chr6 77368039 77368341 -105046901 - AluSx SINE Alu -7 305 2 4519 139 35 37 chr6 77368341 77368430 -105046812 + L1MB4 LINE L1 6092 6180 0 776 334 43 81 chr6 77368564 77368686 -105046556 + L2 LINE L2 1915 2040 -1274 201 74 0 0 chr6 77368690 77368717 -105046525 + (TG)n Simple_repeat Simple_repeat 2 28 0 1668 183 3 14 chr6 77368717 77369020 -105046222 - AluJb SINE Alu 0 308 2 776 334 43 81 chr6 77369020 77369200 -105046042 + L2 LINE L2 2040 2225 -1089 1663 134 40 14 chr6 77369200 77369477 -105045765 - AluJo SINE Alu -28 284 1 776 334 43 81 chr6 77369477 77369964 -105045278 + L2 LINE L2 2225 2675 -639 2310 101 0 0 chr6 77370229 77370525 -105044717 - AluSx SINE Alu -16 296 1 1377 94 47 68 chr6 77370694 77370929 -105044313 + MER30 DNA MER1_type 1 230 0 967 215 84 28 chr6 77371064 77371125 -105044117 - L1ME1 LINE L1 -5 6161 6105 2010 88 33 0 chr6 77371125 77371427 -105043815 - AluSg SINE Alu 0 311 1 967 215 84 28 chr6 77371427 77371648 -105043594 - L1ME1 LINE L1 -61 6105 5862 647 151 67 0 chr6 77372205 77372324 -105042918 + MLT1A2 LTR MaLR 1 127 -247 423 264 62 0 chr6 77372325 77372454 -105042788 + L1ME1 LINE L1 6025 6161 -5 954 207 32 32 chr6 77372468 77372714 -105042528 + MLT1A2 LTR MaLR 129 374 0 777 170 14 7 chr6 77372997 77373144 -105042098 + LTR48B LTR ERV1 497 644 0 307 233 80 80 chr6 77373543 77373693 -105041549 + L2 LINE L2 3159 3308 -5 407 269 110 36 chr6 77373736 77373955 -105041287 - L2 LINE L2 -1 3312 3078 2188 92 0 7 chr6 77373999 77374281 -105040961 + AluSq SINE Alu 1 280 -33 270 0 0 0 chr6 77374281 77374311 -105040931 + (CA)n Simple_repeat Simple_repeat 1 30 0 2063 129 3 16 chr6 77374320 77374629 -105040613 + AluSx SINE Alu 1 305 -7 842 299 23 0 chr6 77374681 77374902 -105040340 + MIR SINE MIR 2 227 -35 517 273 62 6 chr6 77375029 77375190 -105040052 - MIR SINE MIR -5 257 88 2218 109 3 0 chr6 77375351 77375653 -105039589 + AluSx SINE Alu 1 303 -9 1707 81 5 0 chr6 77376011 77376222 -105039020 + AluSp SINE Alu 81 292 -21 2133 125 0 3 chr6 77376282 77376578 -105038664 - AluSx SINE Alu -17 295 1 25 0 0 0 chr6 77376658 77376683 -105038559 + AT_rich Low_complexity Low_complexity 1 25 0 607 241 0 0 chr6 77376809 77376925 -105038317 + MIR SINE MIR 39 154 -108 3707 123 8 25 chr6 77376929 77377086 -105038156 - MER41E LTR ERV1 0 512 354 2232 109 0 0 chr6 77377086 77377380 -105037862 + AluSx SINE Alu 19 312 0 3707 123 8 25 chr6 77377380 77377743 -105037499 - MER41E LTR ERV1 -158 354 1 744 147 172 55 chr6 77377873 77378077 -105037165 - MLT2B2 LTR ERVL 0 515 319 440 187 27 0 chr6 77378536 77378611 -105036631 - Tigger5 DNA MER2_type 0 2323 2247 * 1551 233 7 3 chr6 77378609 77378909 -105036333 - Tigger5 DNA MER2_type -2022 301 1 451 116 0 0 chr6 77379154 77379223 -105036019 - L1PA16 LINE L1 -3 6163 6095 742 225 77 0 chr6 77379617 77379786 -105035456 - MLT2B1 LTR ERVL -338 182 1 2124 85 51 0 chr6 77379901 77380194 -105035048 - AluSc SINE Alu -1 308 1 2430 138 42 42 chr6 77380350 77380776 -105034466 + MSTC LTR MaLR 1 426 -2 5832 210 40 102 chr6 77380776 77382252 -105032990 + MSTC-int LTR MaLR 1 1353 -298 1921 136 3 32 chr6 77382252 77382562 -105032680 - AluSx SINE Alu -11 301 1 5832 210 40 102 chr6 77382562 77382842 -105032400 + MSTC-int LTR MaLR 1353 1649 -2 1482 171 108 77 chr6 77382850 77383198 -105032044 + MSTC LTR MaLR 1 366 -62 2151 124 3 0 chr6 77383198 77383496 -105031746 + AluSq SINE Alu 1 299 -14 1482 171 108 77 chr6 77383496 77383562 -105031680 + MSTC LTR MaLR 366 428 0 1319 95 15 2 chr6 77384168 77384432 -105030810 + AluSx SINE Alu 2 312 0 1265 252 193 5 chr6 77384725 77385114 -105030128 + LTR16B LTR ERVL 1 462 -2 192 300 67 0 chr6 77385629 77385689 -105029553 - L2 LINE L2 0 3313 3250 1985 129 3 50 chr6 77385697 77386015 -105029227 - AluSx SINE Alu -9 303 1 24 32 0 0 chr6 77386289 77386320 -105028922 + AT_rich Low_complexity Low_complexity 1 31 0 1953 154 3 6 chr6 77386662 77386974 -105028268 + AluSx SINE Alu 1 311 -1 1567 175 71 56 chr6 77387213 77387624 -105027618 - Charlie1 DNA MER1_type -2 2759 2343 2428 90 3 0 chr6 77388236 77388537 -105026705 + AluSg SINE Alu 1 302 -8 3255 168 16 0 chr6 77389615 77390122 -105025120 + MLT2B2 LTR ERVL 1 515 0 1626 235 59 39 chr6 77390469 77390963 -105024279 + MLT1E LTR MaLR 90 593 0 216 0 0 0 chr6 77391371 77391395 -105023847 + (TATAA)n Simple_repeat Simple_repeat 5 28 0 2345 96 0 3 chr6 77391643 77391945 -105023297 - AluSx SINE Alu -11 301 1 1118 115 138 0 chr6 77392208 77392382 -105022860 + MSTA LTR MaLR 1 198 -230 12455 164 103 13 chr6 77392398 77393498 -105021744 + L1PBa LINE L1 6 1005 -5857 2010 107 72 3 chr6 77393498 77393789 -105021453 + AluSq SINE Alu 1 311 -2 12455 164 103 13 chr6 77393789 77396317 -105018925 + L1PBa LINE L1 1005 3964 -2898 31 0 0 0 chr6 77396656 77396687 -105018555 + AT_rich Low_complexity Low_complexity 1 31 0 10131 204 8 9 chr6 77397994 77399492 -105015750 + L1 LINE L1 3950 5448 -1414 1949 96 10 41 chr6 77399492 77399900 -105015342 - AluSq SINE Alu 0 399 1 10131 204 8 9 chr6 77399900 77400572 -105014670 + L1 LINE L1 5448 6119 -743 21 0 0 0 chr6 77400686 77400707 -105014535 + AT_rich Low_complexity Low_complexity 1 21 0 293 202 29 58 chr6 77401299 77401403 -105013839 - L1MC5 LINE L1 -30 7931 7831 1967 120 46 3 chr6 77401504 77401660 -105013582 - AluSx SINE Alu -17 295 120 369 0 0 0 chr6 77401660 77401701 -105013541 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 1967 120 46 3 chr6 77401701 77401827 -105013415 - AluSx SINE Alu -192 120 1 2089 94 45 7 chr6 77402258 77402546 -105012696 - AluSx SINE Alu -13 299 1 1772 150 20 7 chr6 77402711 77403005 -105012237 - AluSx SINE Alu -4 308 11 180 0 0 0 chr6 77403442 77403462 -105011780 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1111 208 63 57 chr6 77403825 77404238 -105011004 - MLT1C LTR MaLR 0 467 6 2200 110 10 3 chr6 77404393 77404683 -105010559 - AluSx SINE Alu -16 296 5 2034 130 3 13 chr6 77404871 77405186 -105010056 + AluSx SINE Alu 1 312 0 2185 152 40 32 chr6 77405294 77405840 -105009402 + MLT2A2 LTR ERVL 1 554 0 2055 120 11 0 chr6 77406836 77407146 -105008096 + AluSx SINE Alu 1 313 0 11449 120 58 17 chr6 77407148 77407379 -105007863 + Tigger1 DNA MER2_type 521 741 -1677 2090 115 28 0 chr6 77407379 77407665 -105007577 - AluSx SINE Alu -12 300 7 11449 120 58 17 chr6 77407665 77408787 -105006455 + Tigger1 DNA MER2_type 741 1971 -447 1792 100 16 4 chr6 77408787 77409038 -105006204 - AluSq SINE Alu -15 298 45 11449 120 58 17 chr6 77409038 77409506 -105005736 + Tigger1 DNA MER2_type 1971 2418 0 914 119 160 114 chr6 77409518 77409737 -105005505 - MER93b LTR ERV1 -143 230 2 1448 111 56 173 chr6 77409873 77410049 -105005193 - AluSx SINE Alu 0 302 184 399 68 0 0 chr6 77410049 77410108 -105005134 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1448 111 56 173 chr6 77410108 77410272 -105004970 - AluSx SINE Alu -118 184 2 1345 196 97 39 chr6 77411408 77411799 -105003443 + MLT2B1 LTR ERVL 4 374 -40 226 177 0 89 chr6 77411729 77411808 -105003434 - MER63 DNA MER1_type -940 121 50 * 293 143 0 32 chr6 77411808 77411871 -105003371 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 347 309 0 0 chr6 77411871 77411952 -105003290 + MER94 DNA DNA 52 132 -2 2137 113 14 0 chr6 77412015 77412308 -105002934 + AluSx SINE Alu 1 297 -15 198 0 0 0 chr6 77412308 77412330 -105002912 + (TA)n Simple_repeat Simple_repeat 2 23 0 281 280 83 60 chr6 77412546 77412988 -105002254 + L1MEd LINE L1 532 955 -5164 2120 134 3 10 chr6 77413453 77413767 -105001475 - AluSx SINE Alu 0 312 1 286 198 104 62 chr6 77413885 77413981 -105001261 - MIR3 SINE MIR -7 201 102 882 154 79 18 chr6 77414317 77414475 -105000767 + THE1C LTR MaLR 1 140 -235 2211 116 3 7 chr6 77414475 77414785 -105000457 - AluSx SINE Alu -3 309 1 882 154 79 18 chr6 77414785 77414815 -105000427 + THE1C LTR MaLR 140 167 -208 2647 152 166 2 chr6 77414846 77415346 -104999896 - LTR12 LTR ERV1 -131 583 2 595 220 30 45 chr6 77415427 77415691 -104999551 - pTR5 LTR ERV1 -1410 1028 769 900 138 69 35 chr6 77415699 77415873 -104999369 + THE1C LTR MaLR 196 375 0 1976 44 0 0 chr6 77415998 77416227 -104999015 + AluY SINE Alu 83 311 0 2020 103 7 24 chr6 77416457 77416771 -104998471 + AluSp SINE Alu 1 309 0 232 178 22 0 chr6 77416874 77416919 -104998323 - MLT1I LTR MaLR 0 409 364 2197 119 64 25 chr6 77417030 77417391 -104997851 + THE1C LTR MaLR 1 375 0 1826 189 104 43 chr6 77417559 77417974 -104997268 + L1MC4 LINE L1 6460 6913 -1129 1850 63 5 0 chr6 77417974 77418196 -104997046 + AluSp SINE Alu 78 300 -13 1826 189 104 43 chr6 77418196 77418287 -104996955 + L1MC4 LINE L1 6913 6997 -1045 438 128 11 225 chr6 77418704 77418891 -104996351 - L1MC4 LINE L1 -77 7965 7819 * 4501 224 67 44 chr6 77418879 77419327 -104995915 + L1MB8 LINE L1 4006 4443 -1735 2850 13 0 0 chr6 77419327 77419633 -104995609 + AluYa5 SINE Alu 1 306 -5 4501 224 67 44 chr6 77419633 77419733 -104995509 + L1MB8 LINE L1 4443 4539 -1639 1647 174 11 3 chr6 77419733 77420015 -104995227 + AluJb SINE Alu 13 296 -16 4501 224 67 44 chr6 77420015 77420085 -104995157 + L1MB8 LINE L1 4539 4606 -1572 1734 113 63 63 chr6 77420085 77420385 -104994857 - AluSx SINE Alu -12 300 1 4501 224 67 44 chr6 77420385 77421216 -104994026 + L1MB8 LINE L1 4606 5417 -761 1655 199 0 31 chr6 77421216 77421361 -104993881 + AluJo SINE Alu 1 149 -163 2300 92 7 3 chr6 77421361 77421665 -104993577 + AluSq SINE Alu 1 305 -8 1655 199 0 31 chr6 77421665 77421840 -104993402 + AluJo SINE Alu 149 311 -1 4501 224 67 44 chr6 77421840 77422049 -104993193 + L1MB8 LINE L1 5417 5620 -558 2803 9 0 28 chr6 77422049 77422368 -104992874 + AluYb8 SINE Alu 1 310 -8 4501 224 67 44 chr6 77422368 77422736 -104992506 + L1MB8 LINE L1 5620 6075 -103 2354 101 0 10 chr6 77422736 77423044 -104992198 + AluSx SINE Alu 1 305 -7 4501 224 67 44 chr6 77423044 77423150 -104992092 + L1MB8 LINE L1 6075 6177 -1 467 210 164 58 chr6 77423318 77423628 -104991614 - L1MC4a LINE L1 -1492 6316 5974 850 218 12 6 chr6 77423831 77424030 -104991212 + FRAM SINE Alu 1 64 0 2416 78 3 0 chr6 77424031 77424338 -104990904 + AluY SINE Alu 1 308 -3 1760 152 7 3 chr6 77424399 77424705 -104990537 + AluSx SINE Alu 1 307 0 471 261 119 40 chr6 77424825 77424981 -104990261 + L1MC4a LINE L1 5678 5859 -1949 1800 144 0 4 chr6 77424981 77425258 -104989984 - AluSx SINE Alu -36 276 1 471 261 119 40 chr6 77425258 77425327 -104989915 + L1MC4a LINE L1 5859 5921 -1887 436 304 13 19 chr6 77425859 77426017 -104989225 + MIR SINE MIR 51 207 -55 785 314 98 67 chr6 77427208 77427705 -104987537 + L3 LINE CR1 968 1487 -90 808 212 64 35 chr6 77427705 77427908 -104987334 + MER3 DNA MER1_type 1 209 0 785 314 98 67 chr6 77427908 77427980 -104987262 + L3 LINE CR1 1487 1555 -22 1574 176 0 44 chr6 77428214 77428373 -104986869 - AluJo SINE Alu -24 288 146 2213 114 30 0 chr6 77428373 77428672 -104986570 - AluSg SINE Alu -2 308 1 1574 176 0 44 chr6 77428672 77428807 -104986435 - AluJo SINE Alu -166 146 7 180 294 0 0 chr6 77429289 77429340 -104985902 - MIR SINE MIR -140 122 72 371 213 20 100 chr6 77429388 77429538 -104985704 - L2 LINE L2 -463 2851 2714 290 96 0 39 chr6 77429552 77429604 -104985638 - L1MA10 LINE L1 -8 6326 6277 3494 244 173 30 chr6 77429645 77429983 -104985259 + L2 LINE L2 827 1115 -2199 2281 112 0 6 chr6 77429983 77430297 -104984945 - AluSx SINE Alu 0 312 1 3494 244 173 30 chr6 77430297 77431412 -104983830 + L2 LINE L2 1115 2489 -825 960 337 119 48 chr6 77431660 77432125 -104983117 - L2 LINE L2 -449 2865 2434 2161 111 3 0 chr6 77432125 77432413 -104982829 + AluSp SINE Alu 1 289 -24 960 337 119 48 chr6 77432413 77432799 -104982443 - L2 LINE L2 -880 2434 1936 1532 212 15 74 chr6 77432799 77433190 -104982052 - MLT1A2 LTR MaLR -3 371 4 960 337 119 48 chr6 77433190 77433293 -104981949 - L2 LINE L2 -1378 1936 1842 2373 95 0 3 chr6 77433474 77433780 -104981462 + AluSq SINE Alu 1 305 -8 2430 205 83 58 chr6 77433924 77434993 -104980249 + MER45R DNA AcHobo 5 1362 -219 2558 52 3 3 chr6 77434993 77435303 -104979939 + AluY SINE Alu 1 310 -1 2430 205 83 58 chr6 77435303 77435529 -104979713 + MER45R DNA AcHobo 1362 1581 0 294 269 52 8 chr6 77436240 77436351 -104978891 - L1ME LINE L1 -272 5849 5730 2315 78 7 10 chr6 77436351 77436665 -104978577 - AluSx SINE Alu 0 312 1 294 269 52 8 chr6 77436665 77436687 -104978555 - L1ME LINE L1 -391 5730 5710 1610 215 52 6 chr6 77438044 77438393 -104976849 - MLT1A1 LTR MaLR 0 365 1 489 251 183 71 chr6 77439467 77439537 -104975705 + MLT1H LTR MaLR 123 184 -365 2036 120 33 10 chr6 77439537 77439836 -104975406 - AluSp SINE Alu -7 306 1 489 251 183 71 chr6 77439836 77440115 -104975127 + MLT1H LTR MaLR 184 511 -38 230 182 146 0 chr6 77440146 77440201 -104975041 + MLT1H LTR MaLR 487 549 0 1387 272 58 116 chr6 77440218 77440417 -104974825 + L2 LINE L2 2044 2253 -1061 2161 103 0 17 chr6 77440417 77440708 -104974534 + AluSc SINE Alu 1 286 -23 1387 272 58 116 chr6 77440708 77440734 -104974508 + L2 LINE L2 2253 2279 -1035 2273 108 0 3 chr6 77440734 77441041 -104974201 - AluSx SINE Alu -6 306 1 1387 272 58 116 chr6 77441041 77441132 -104974110 + L2 LINE L2 2279 2374 -940 2068 131 0 10 chr6 77441132 77441438 -104973804 - AluJb SINE Alu -9 303 1 1387 272 58 116 chr6 77441438 77441678 -104973564 + L2 LINE L2 2374 2627 -687 2374 98 3 0 chr6 77441678 77441983 -104973259 + AluSx SINE Alu 1 306 -6 1387 272 58 116 chr6 77441983 77442231 -104973011 + L2 LINE L2 2627 2793 -521 1637 260 23 45 chr6 77442231 77442701 -104972541 - LTR16B LTR ERVL 0 464 5 1387 272 58 116 chr6 77442701 77442812 -104972430 + L2 LINE L2 2793 2909 -405 1101 73 7 0 chr6 77442853 77442989 -104972253 - AluSp SINE Alu -176 137 1 1963 208 108 9 chr6 77442989 77443688 -104971554 - L1ME2 LINE L1 -335 5829 5069 1823 202 25 27 chr6 77443964 77444182 -104971060 - MLT1A1 LTR MaLR 0 365 147 2373 112 0 0 chr6 77444182 77444495 -104970747 - AluSq SINE Alu 0 313 1 1823 202 25 27 chr6 77444495 77444642 -104970600 - MLT1A1 LTR MaLR -218 147 1 319 258 0 32 chr6 77445050 77445143 -104970099 - MLT1K LTR MaLR -492 96 7 1525 168 31 48 chr6 77445559 77445850 -104969392 + AluJo SINE Alu 10 295 -17 290 231 31 0 chr6 77445933 77445998 -104969244 - L2 LINE L2 -2 3270 3204 284 232 32 53 chr6 77446064 77446159 -104969083 + L2 LINE L2 3208 3300 -13 2299 82 0 14 chr6 77446167 77446458 -104968784 - AluY SINE Alu -24 287 1 1877 126 4 4 chr6 77446747 77447017 -104968225 + AluSq SINE Alu 35 304 -9 950 54 0 0 chr6 77447416 77447527 -104967715 + L1PA3 LINE L1 6042 6152 -3 2349 97 0 0 chr6 77447723 77448021 -104967221 - AluSc SINE Alu -11 298 1 560 248 65 22 chr6 77448409 77448760 -104966482 + MLT1I LTR MaLR 15 406 -3 503 341 28 42 chr6 77449623 77449981 -104965261 + L2 LINE L2 2030 2382 -932 2200 118 0 3 chr6 77450143 77450439 -104964803 + AluSq SINE Alu 2 296 -17 215 31 31 0 chr6 77450442 77450474 -104964768 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 280 358 106 35 chr6 77451636 77452119 -104963123 + L2 LINE L2 2379 2895 -419 218 336 58 87 chr6 77452203 77452411 -104962831 + L2 LINE L2 2964 3165 -107 315 240 0 0 chr6 77452574 77452648 -104962594 + MER3 DNA MER1_type 41 114 -95 752 152 0 0 chr6 77452650 77452762 -104962480 + FLAM_C SINE Alu 2 113 -30 810 190 124 8 chr6 77452822 77453064 -104962178 + MER3 DNA MER1_type 2355 2624 0 2183 85 3 48 chr6 77453265 77453581 -104961661 - AluSp SINE Alu -10 303 2 185 164 109 36 chr6 77453958 77454013 -104961229 - L2 LINE L2 0 3272 3214 748 203 157 10 chr6 77454397 77454594 -104960648 + MIR SINE MIR 27 252 -10 263 270 0 0 chr6 77455110 77455173 -104960069 + (CCG)n Simple_repeat Simple_repeat 3 65 0 24 0 0 0 chr6 77457091 77457115 -104958127 + AT_rich Low_complexity Low_complexity 1 24 0 1531 100 13 46 chr6 77458628 77458867 -104956375 + AluSg/x SINE Alu 78 308 -4 1274 177 118 27 chr6 77458884 77459227 -104956015 - L1MB7 LINE L1 -163 6021 5647 457 358 103 16 chr6 77459497 77459933 -104955309 + L2 LINE L2 2825 3298 -15 189 74 0 0 chr6 77459935 77459962 -104955280 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr6 77461160 77461183 -104954059 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1704 174 30 0 chr6 77461377 77461676 -104953566 - AluJb SINE Alu -4 308 1 2095 128 0 13 chr6 77461955 77462259 -104952983 + AluSx SINE Alu 2 301 -11 364 198 12 23 chr6 77462481 77462567 -104952675 - MIR SINE MIR -34 228 144 2207 128 0 0 chr6 77462626 77462932 -104952310 + AluSx SINE Alu 1 306 -6 205 293 19 38 chr6 77462946 77463052 -104952190 - L2 LINE L2 -39 3274 3171 2204 237 30 0 chr6 77463068 77463537 -104951705 + MER68 LTR ERV1 73 555 -7 1549 181 19 45 chr6 77464038 77464347 -104950895 - AluJo SINE Alu 0 302 2 31 0 0 0 chr6 77464424 77464455 -104950787 + AT_rich Low_complexity Low_complexity 1 31 0 238 349 12 0 chr6 77464511 77464597 -104950645 + MIR3 SINE MIR 5 91 -117 1166 87 141 0 chr6 77464687 77464872 -104950370 - AluY SINE Alu -3 308 98 22 0 0 0 chr6 77464903 77464925 -104950317 + AT_rich Low_complexity Low_complexity 1 22 0 1505 174 32 58 chr6 77465784 77466095 -104949147 - MLT1D LTR MaLR 0 505 203 302 131 49 33 chr6 77466162 77466223 -104949019 - MLT1D LTR MaLR -441 64 3 2169 115 16 0 chr6 77466261 77466566 -104948676 - AluSx SINE Alu -2 310 1 3240 198 140 23 chr6 77466702 77467350 -104947892 + L1ME1 LINE L1 4207 5011 -1135 342 0 0 0 chr6 77467350 77467388 -104947854 + (CAA)n Simple_repeat Simple_repeat 1 38 0 3240 198 140 23 chr6 77467388 77467724 -104947518 + L1ME1 LINE L1 5011 5306 -840 802 244 90 4 chr6 77467726 77467960 -104947282 + L1ME1 LINE L1 5677 5930 -236 1628 173 3 3 chr6 77467963 77468269 -104946973 - AluSx SINE Alu -6 306 1 1681 154 23 42 chr6 77468493 77468799 -104946443 + AluJb SINE Alu 1 300 -12 2401 103 0 0 chr6 77469531 77469843 -104945399 - AluSx SINE Alu 0 312 1 2104 113 3 0 chr6 77470116 77470398 -104944844 + AluSx SINE Alu 7 289 -23 2113 103 7 14 chr6 77470519 77470811 -104944431 - AluSg1 SINE Alu -10 299 10 221 304 149 20 chr6 77471094 77471242 -104944000 - MIR3 SINE MIR -1 207 41 357 252 206 0 chr6 77472319 77472450 -104942792 + MIR SINE MIR 93 250 -12 197 225 0 0 chr6 77473054 77473094 -104942148 - L2 LINE L2 -1075 2239 2200 939 184 18 0 chr6 77473246 77473409 -104941833 - FRAM SINE Alu -2 174 9 302 200 50 0 chr6 77474230 77474290 -104940952 + MER20 DNA MER1_type 152 214 -5 672 228 136 5 chr6 77474377 77474561 -104940681 - MER3 DNA MER1_type -1 208 1 25 0 0 0 chr6 77474561 77474586 -104940656 + AT_rich Low_complexity Low_complexity 1 25 0 6229 209 68 34 chr6 77475034 77476369 -104938873 - L1MD2 LINE L1 -82 6346 5058 1918 114 3 35 chr6 77476369 77476659 -104938583 - AluSx SINE Alu -31 281 1 6229 209 68 34 chr6 77476659 77477657 -104937585 - L1MD2 LINE L1 -1370 5058 4095 2262 79 4 0 chr6 77477657 77477936 -104937306 - AluSp SINE Alu -13 300 21 6229 209 68 34 chr6 77477936 77478039 -104937203 - L1MD2 LINE L1 -2333 4095 3997 189 0 0 0 chr6 77478039 77478060 -104937182 + (TA)n Simple_repeat Simple_repeat 2 22 0 6229 209 68 34 chr6 77478060 77478655 -104936587 - L1MD2 LINE L1 -2431 3997 3213 * 6312 120 39 40 chr6 77478651 77480134 -104935108 - L1MA3 LINE L1 0 7724 6241 2429 80 0 0 chr6 77480134 77480433 -104934809 - AluY SINE Alu -12 299 1 6312 120 39 40 chr6 77480433 77480646 -104934596 - L1MA3 LINE L1 -1483 6241 6031 2405 98 0 0 chr6 77480646 77480952 -104934290 - AluSc SINE Alu -3 306 1 6312 120 39 40 chr6 77480952 77481031 -104934211 - L1MA3 LINE L1 -1693 6031 5953 17619 153 35 9 chr6 77482257 77484643 -104930599 - L1MA3 LINE L1 -1600 5965 3641 2194 118 0 10 chr6 77484643 77484956 -104930286 - AluSg SINE Alu 0 310 1 17619 153 35 9 chr6 77484956 77487321 -104927921 - L1MA3 LINE L1 -3924 3641 1066 1954 174 65 29 chr6 77487321 77487661 -104927581 + MSTA LTR MaLR 1 360 -68 1967 139 17 0 chr6 77487661 77487949 -104927293 - AluSx SINE Alu -19 293 1 1954 174 65 29 chr6 77487949 77488021 -104927221 + MSTA LTR MaLR 360 428 0 17619 153 35 9 chr6 77488021 77488496 -104926746 - L1MA3 LINE L1 -6499 1066 604 1267 154 77 9 chr6 77488496 77488717 -104926525 - AluJb SINE Alu -76 236 1 2954 171 59 2 chr6 77488717 77489277 -104925965 - L1MA3 LINE L1 -6958 607 16 1374 259 88 62 chr6 77489301 77489978 -104925264 - L1MD2 LINE L1 -4749 1647 989 1771 177 20 3 chr6 77489978 77490283 -104924959 - AluJb SINE Alu -2 310 1 1374 259 88 62 chr6 77490283 77490419 -104924823 - L1MD2 LINE L1 -5407 989 858 2156 114 13 20 chr6 77490419 77490725 -104924517 - AluSx SINE Alu -8 304 1 1374 259 88 62 chr6 77490725 77490973 -104924269 - L1MD2 LINE L1 -5538 858 558 980 302 68 9 chr6 77490979 77491403 -104923839 - L1MD2 LINE L1 -5895 501 53 283 294 34 34 chr6 77492313 77492459 -104922783 + L2 LINE L2 3168 3313 0 2040 127 7 3 chr6 77492604 77492896 -104922346 - AluSx SINE Alu -13 299 7 306 309 130 0 chr6 77492941 77493064 -104922178 + L3 LINE CR1 1364 1502 -75 302 335 88 16 chr6 77493080 77493262 -104921980 - MIR SINE MIR -21 241 47 1487 126 4 35 chr6 77494948 77495178 -104920064 - AluSg/x SINE Alu -3 309 87 10387 212 52 38 chr6 77495194 77496694 -104918548 - L1MA9 LINE L1 -38 6510 5032 1553 189 62 0 chr6 77496694 77496969 -104918273 - AluJb SINE Alu -16 296 5 10387 212 52 38 chr6 77496969 77497289 -104917953 - L1MA9 LINE L1 -1516 5032 4718 6137 139 74 15 chr6 77497289 77497562 -104917680 - Tigger3b DNA MER2_type -1797 1231 976 2378 82 0 13 chr6 77497562 77497868 -104917374 + AluSc SINE Alu 1 302 -7 6137 139 74 15 chr6 77497868 77498756 -104916486 - Tigger3b DNA MER2_type -2052 976 1 10387 212 52 38 chr6 77498756 77498875 -104916367 - L1MA9 LINE L1 -1830 4718 4602 2199 87 0 0 chr6 77498875 77499151 -104916091 - AluSq SINE Alu -9 304 29 10387 212 52 38 chr6 77499151 77500133 -104915109 - L1MA9 LINE L1 -1946 4602 3635 2280 117 7 3 chr6 77500133 77500440 -104914802 - AluSx SINE Alu 0 312 5 10387 212 52 38 chr6 77500440 77502438 -104912804 - L1MA9 LINE L1 -2913 3635 1403 1731 171 26 3 chr6 77502438 77502743 -104912499 - AluJb SINE Alu 0 312 1 10387 212 52 38 chr6 77502743 77502934 -104912308 - L1MA9 LINE L1 -5145 1403 1216 2327 130 112 69 chr6 77502935 77503095 -104912147 - MER1A DNA MER1_type -2173 529 377 2767 101 49 11 chr6 77503095 77503540 -104911702 - L1PB1 LINE L1 -1 6150 5689 2327 130 112 69 chr6 77503540 77503886 -104911356 - MER1A DNA MER1_type -2325 377 1 3749 222 39 15 chr6 77503886 77505058 -104910184 - L1M3d LINE L1 -4674 1217 2 181 299 117 68 chr6 77505572 77505853 -104909389 - L2 LINE L2 -685 2629 2335 2179 122 3 3 chr6 77505891 77506194 -104909048 + AluSg SINE Alu 1 303 -7 24 77 0 0 chr6 77506323 77506375 -104908867 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr6 77506650 77506679 -104908563 + AT_rich Low_complexity Low_complexity 1 29 0 530 205 169 72 chr6 77506794 77506931 -104908311 - L1MC4 LINE L1 -72 7970 7848 2603 99 6 0 chr6 77506931 77507284 -104907958 - THE1A LTR MaLR 0 355 1 7419 164 47 72 chr6 77507284 77508974 -104906268 - MST-int LTR MaLR 0 1651 3 2602 88 3 22 chr6 77508976 77509338 -104905904 - THE1A LTR MaLR 0 355 1 530 205 169 72 chr6 77509338 77509445 -104905797 - L1MC4 LINE L1 -194 7848 7698 3153 99 43 4 chr6 77509846 77510333 -104904909 - MER9 LTR ERVK -5 506 1 847 192 45 0 chr6 77510486 77510642 -104904600 - FRAM SINE Alu -3 163 1 915 261 115 32 chr6 77510766 77511114 -104904128 + L2 LINE L2 2937 3313 0 2253 105 3 40 chr6 77511522 77511846 -104903396 - AluSq SINE Alu -1 312 1 26 82 0 0 chr6 77512171 77512232 -104903010 + AT_rich Low_complexity Low_complexity 1 61 0 2576 47 0 0 chr6 77512455 77512751 -104902491 - AluY SINE Alu 0 311 16 258 288 48 40 chr6 77513444 77513569 -104901673 + MIR SINE MIR 112 237 -25 305 303 144 8 chr6 77513674 77513806 -104901436 - L2 LINE L2 -38 3275 3126 360 0 0 0 chr6 77514225 77514265 -104900977 + (TG)n Simple_repeat Simple_repeat 2 41 0 2075 143 0 3 chr6 77514451 77514759 -104900483 - AluSx SINE Alu -5 307 1 1962 154 0 10 chr6 77515129 77515428 -104899814 + AluJb SINE Alu 1 296 -16 266 291 25 0 chr6 77515428 77515507 -104899735 - MLT1J LTR MaLR -53 458 378 378 281 39 31 chr6 77515655 77515783 -104899459 - MLT1J LTR MaLR -382 129 1 2577 53 0 0 chr6 77516508 77516807 -104898435 + AluY SINE Alu 1 299 -12 381 43 0 0 chr6 77516810 77516857 -104898385 + (TG)n Simple_repeat Simple_repeat 2 48 0 370 284 167 19 chr6 77517212 77517374 -104897868 + MER5A DNA MER1_type 4 189 0 1224 206 8 30 chr6 77517444 77517706 -104897536 - AluJo SINE Alu -56 256 1 2147 118 0 13 chr6 77518144 77518450 -104896792 - AluSx SINE Alu -10 302 1 347 234 65 9 chr6 77519564 77519671 -104895571 - L1ME3A LINE L1 -218 5952 5840 326 276 67 13 chr6 77519692 77519917 -104895325 - L1ME3A LINE L1 -646 5518 5282 33 25 0 0 chr6 77520472 77520512 -104894730 + AT_rich Low_complexity Low_complexity 1 40 0 844 169 0 0 chr6 77521485 77521615 -104893627 - FLAM_A SINE Alu -3 130 1 2063 128 0 14 chr6 77522089 77522386 -104892856 - AluSx SINE Alu -19 293 1 646 219 68 10 chr6 77523081 77523286 -104891956 - L1ME2 LINE L1 -6 6158 5942 1594 185 25 0 chr6 77523436 77523717 -104891525 + AluSg SINE Alu 1 288 -22 2038 141 0 16 chr6 77525081 77525387 -104889855 - AluSx SINE Alu -11 301 1 492 264 46 66 chr6 77525922 77526119 -104889123 + L3 LINE CR1 1370 1562 -15 376 176 56 0 chr6 77527255 77527363 -104887879 + Charlie5 DNA MER1_type 2468 2581 -31 413 338 21 63 chr6 77527509 77527793 -104887449 - HAL1b LINE L1 -1073 275 4 1236 138 11 0 chr6 77528217 77528398 -104886844 + AluSx SINE Alu 1 183 -129 183 42 0 0 chr6 77528405 77528429 -104886813 + (A)n Simple_repeat Simple_repeat 1 24 0 2236 120 36 17 chr6 77528687 77529044 -104886198 - THE1B LTR MaLR 0 364 1 11296 106 4 9 chr6 77529044 77530632 -104884610 - THE1B-int LTR MaLR 0 1580 1 2186 124 30 30 chr6 77530632 77530996 -104884246 - THE1B LTR MaLR 0 364 1 15093 54 1 0 chr6 77532113 77534805 -104880437 - L1PA6 LINE L1 0 6154 3459 185 271 43 29 chr6 77535043 77535113 -104880129 + MIR SINE MIR 23 93 -115 263 365 123 15 chr6 77535606 77535809 -104879433 - L2 LINE L2 -661 2653 2429 22 80 0 0 chr6 77536371 77536421 -104878821 + AT_rich Low_complexity Low_complexity 1 50 0 1740 135 63 36 chr6 77537144 77537507 -104877735 - THE1C LTR MaLR -2 373 1 2276 118 0 0 chr6 77539090 77539396 -104875846 + AluSx SINE Alu 1 306 -6 29 0 0 0 chr6 77539619 77539648 -104875594 + AT_rich Low_complexity Low_complexity 1 29 0 424 297 22 22 chr6 77540345 77540483 -104874759 + MIR3 SINE MIR 7 144 -64 404 291 37 8 chr6 77540627 77540761 -104874481 + MIR SINE MIR 88 225 -37 531 230 75 0 chr6 77541347 77541508 -104873734 - MER104 DNA Tc2 -7 173 1 21 0 0 0 chr6 77541926 77541947 -104873295 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 77543191 77543216 -104872026 + AT_rich Low_complexity Low_complexity 1 25 0 2153 131 25 8 chr6 77543542 77543901 -104871341 + MER47A DNA MER2_type 1 365 -1 9067 27 0 0 chr6 77544922 77546763 -104868479 + L1PA2 LINE L1 4307 6147 -8 24 0 0 0 chr6 77546763 77546787 -104868455 + AT_rich Low_complexity Low_complexity 1 24 0 270 335 116 65 chr6 77546845 77547320 -104867922 - L2 LINE L2 -640 2674 2176 276 339 16 66 chr6 77548094 77548277 -104866965 - MIR SINE MIR -2 260 87 507 235 17 8 chr6 77549939 77550058 -104865184 - MIR SINE MIR -28 234 115 267 297 115 30 chr6 77550071 77550236 -104865006 - MIR SINE MIR 0 262 84 923 209 56 14 chr6 77550449 77550664 -104864578 + MER58A DNA MER1_type 1 224 0 28 29 0 0 chr6 77551101 77551136 -104864106 + AT_rich Low_complexity Low_complexity 1 35 0 7041 132 57 55 chr6 77551291 77552150 -104863092 + Tigger1 DNA MER2_type 2 865 -1553 1570 197 20 3 chr6 77552150 77552449 -104862793 - AluJo SINE Alu -8 304 1 7041 132 57 55 chr6 77552449 77553040 -104862202 + Tigger1 DNA MER2_type 865 1454 -964 1760 175 10 7 chr6 77553041 77553338 -104861904 - AluJb SINE Alu -14 298 1 2661 136 39 12 chr6 77553478 77553972 -104861270 - MER6 DNA MER2_type -8 857 351 41827 41 1 2 chr6 77553985 77560135 -104855107 - L1PA3 LINE L1 -3 6152 7 1549 224 18 0 chr6 77560143 77560469 -104854773 - MER6 DNA MER2_type -502 363 32 505 197 51 15 chr6 77560652 77560789 -104854453 + Charlie4 DNA MER1_type 1819 1960 -1 316 315 31 37 chr6 77561082 77561244 -104853998 + MIR SINE MIR 96 256 -6 204 226 19 38 chr6 77561462 77561515 -104853727 + MIR SINE MIR 19 70 -138 1831 191 15 0 chr6 77562153 77562493 -104852749 + MER7A DNA MER2_type 4 346 0 805 96 0 80 chr6 77562844 77562969 -104852273 + FLAM_C SINE Alu 11 125 -18 1877 137 65 0 chr6 77562985 77563263 -104851979 + AluSg SINE Alu 1 296 -14 30 0 0 0 chr6 77563533 77563563 -104851679 + AT_rich Low_complexity Low_complexity 1 30 0 2369 92 7 0 chr6 77564412 77564716 -104850526 - AluSc SINE Alu -3 306 1 3739 168 40 4 chr6 77564717 77565451 -104849791 - L1MA5 LINE L1 -120 6180 5421 1093 43 0 0 chr6 77565450 77565589 -104849653 - L1P LINE L1 -6004 142 4 * 1613 151 70 0 chr6 77565589 77565985 -104849257 - L1MA5 LINE L1 -756 5390 5003 2048 129 3 0 chr6 77565995 77566289 -104848953 - AluSx SINE Alu -17 295 1 944 105 7 0 chr6 77566314 77566457 -104848785 - L1MA2 LINE L1 0 6304 6161 1854 156 3 0 chr6 77566474 77566808 -104848434 - L1MA5 LINE L1 -2022 4124 3790 2033 259 144 27 chr6 77566854 77567969 -104847273 - L1M2b LINE L1 -5904 1305 60 2463 112 0 0 chr6 77567990 77568348 -104846894 + Charlie3 DNA MER1_type 211 568 -2142 407 181 43 21 chr6 77568345 77568439 -104846803 - MLT1E1 LTR MaLR -556 98 3 * 1847 180 0 20 chr6 77568531 77568837 -104846405 + AluJo SINE Alu 1 300 -12 286 269 62 31 chr6 77569082 77569212 -104846030 + MIR SINE MIR 99 232 -30 21 36 0 0 chr6 77569463 77569491 -104845751 + AT_rich Low_complexity Low_complexity 1 28 0 1088 94 0 0 chr6 77570757 77570906 -104844336 + MLT2A1 LTR ERVL 214 362 -82 702 54 0 0 chr6 77571068 77571160 -104844082 + L1PA4 LINE L1 7 98 -6048 * 37118 36 2 5 chr6 77571154 77576708 -104838534 + L1PA4 LINE L1 617 6155 0 315 284 117 73 chr6 77576788 77577208 -104838034 - L2 LINE L2 -224 3048 2587 845 257 11 32 chr6 77577422 77577702 -104837540 - L1ME2 LINE L1 -9 6155 5882 204 97 0 0 chr6 77577814 77577845 -104837397 + (T)n Simple_repeat Simple_repeat 1 31 0 769 169 0 15 chr6 77577856 77577986 -104837256 + FLAM_A SINE Alu 11 138 -4 520 165 12 0 chr6 77578014 77578099 -104837143 + FRAM SINE Alu 63 148 -28 2048 94 11 4 chr6 77578368 77578645 -104836597 - AluSx SINE Alu -1 311 33 248 239 0 45 chr6 77580676 77580743 -104834499 - L2 LINE L2 -72 3200 3137 319 279 43 36 chr6 77630929 77631069 -104784173 + MER112 DNA MER1_type 110 250 -10 221 325 72 0 chr6 77631655 77631738 -104783504 + MIR3 SINE MIR 113 201 -7 2474 68 0 7 chr6 77632169 77632477 -104782765 + AluY SINE Alu 1 306 -5 1935 155 0 16 chr6 77632690 77633007 -104782235 - AluJo SINE Alu 0 312 1 22 35 0 0 chr6 77633158 77633187 -104782055 + AT_rich Low_complexity Low_complexity 1 29 0 1961 118 97 24 chr6 77633332 77633671 -104781571 - THE1B LTR MaLR 0 364 1 337 100 83 33 chr6 77633745 77633805 -104781437 - THE1B LTR MaLR -301 63 1 21 0 0 0 chr6 77634634 77634655 -104780587 + AT_rich Low_complexity Low_complexity 1 21 0 1117 262 93 13 chr6 77635493 77636111 -104779131 - L2 LINE L2 0 3313 2638 455 251 80 18 chr6 77636116 77636279 -104778963 - L2 LINE L2 -1611 1703 1531 254 264 110 11 chr6 77636299 77636390 -104778852 - MLT1F1 LTR MaLR -16 551 452 317 191 36 118 chr6 77636586 77636696 -104778546 - MLT1I LTR MaLR -6 543 289 513 294 28 23 chr6 77636728 77636905 -104778337 - L2 LINE L2 -2930 384 207 711 241 24 53 chr6 77637627 77637834 -104777408 - MER58A DNA MER1_type 0 224 24 193 286 48 0 chr6 77638398 77638461 -104776781 - L3 LINE CR1 -3 1574 1509 447 306 128 31 chr6 77639822 77640175 -104775067 - MLT1L LTR MaLR -23 592 206 267 258 30 0 chr6 77640154 77640220 -104775022 - MLT1J LTR MaLR -349 162 95 * 21 36 0 0 chr6 77640534 77640562 -104774680 + AT_rich Low_complexity Low_complexity 1 28 0 941 268 21 8 chr6 77640570 77640805 -104774437 - MIR SINE MIR -24 238 1 183 205 0 0 chr6 77641519 77641558 -104773684 + (TG)n Simple_repeat Simple_repeat 1 39 0 192 265 189 25 chr6 77643194 77643390 -104771852 - L2 LINE L2 -1212 2102 1875 220 195 0 0 chr6 77645093 77645134 -104770108 + (TG)n Simple_repeat Simple_repeat 1 41 0 222 336 19 28 chr6 77645702 77645809 -104769433 + MIR SINE MIR 21 126 -82 25 31 0 0 chr6 77646607 77646639 -104768603 + AT_rich Low_complexity Low_complexity 1 32 0 495 144 81 18 chr6 77646915 77647026 -104768216 - L1MB3 LINE L1 -2 6181 6064 37 69 0 0 chr6 77647709 77647781 -104767461 + AT_rich Low_complexity Low_complexity 1 72 0 510 177 52 0 chr6 77649337 77649433 -104765809 + MIR SINE MIR 148 248 -14 875 209 0 0 chr6 77650001 77650164 -104765078 + MER58A DNA MER1_type 30 192 -32 2284 94 0 3 chr6 77651540 77651837 -104763405 + AluSx SINE Alu 1 296 -16 549 0 0 0 chr6 77652251 77652312 -104762930 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 318 261 90 9 chr6 77652829 77652985 -104762257 - MIR SINE MIR -36 172 2 252 0 0 0 chr6 77655488 77655516 -104759726 + (T)n Simple_repeat Simple_repeat 1 28 0 1991 135 0 26 chr6 77659888 77660191 -104755051 + AluJo SINE Alu 1 295 -17 217 313 107 36 chr6 77660721 77660833 -104754409 + MIR SINE MIR 16 135 -73 198 0 0 0 chr6 77661262 77661284 -104753958 + (T)n Simple_repeat Simple_repeat 1 22 0 266 246 66 0 chr6 77662225 77662286 -104752956 - MER2 DNA MER2_type 0 345 281 2039 102 35 0 chr6 77662333 77662616 -104752626 - AluSq SINE Alu -18 295 3 1091 155 83 0 chr6 77662636 77662829 -104752413 - MER2 DNA MER2_type -135 210 2 1901 248 85 20 chr6 77662931 77663588 -104751654 + L1MEc LINE L1 45 744 -5652 200 230 40 14 chr6 77663589 77663663 -104751579 + (TA)n Simple_repeat Simple_repeat 2 77 0 626 163 30 0 chr6 77663717 77663852 -104751390 + L1MEc LINE L1 1028 1166 -5230 4999 215 47 37 chr6 77663975 77665564 -104749678 + L1MEc LINE L1 2660 4263 -1952 297 225 0 12 chr6 77666139 77666219 -104749023 - L1MB7 LINE L1 -15 6169 6091 7593 222 71 60 chr6 77666228 77666399 -104748843 - L1M4c LINE L1 -1231 5413 5245 656 183 0 9 chr6 77666399 77666514 -104748728 - FLAM_A SINE Alu -18 115 2 7593 222 71 60 chr6 77666514 77666997 -104748245 - L1M4c LINE L1 -1399 5245 4769 6587 19 0 0 chr6 77666997 77667755 -104747487 + L1PA4 LINE L1 5398 6155 0 7593 222 71 60 chr6 77667755 77667832 -104747410 - L1M4c LINE L1 -1875 4769 4694 228 35 0 0 chr6 77667832 77667861 -104747381 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7593 222 71 60 chr6 77667861 77672363 -104742879 - L1M4c LINE L1 -1950 4694 2 522 284 96 18 chr6 77673597 77673815 -104741427 + MIR SINE MIR 8 242 -20 343 289 96 39 chr6 77675275 77675683 -104739559 - L1M4 LINE L1 -3402 2744 2314 375 299 35 23 chr6 77676422 77676596 -104738646 - HAL1b LINE L1 -785 563 388 261 0 0 0 chr6 77676681 77676710 -104738532 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 234 62 0 0 chr6 77677276 77677308 -104737934 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 839 289 10 0 chr6 77677451 77677655 -104737587 - MIR SINE MIR -14 248 43 882 138 76 7 chr6 77677710 77677855 -104737387 - AluJo/FRAM SINE Alu -24 288 134 2012 127 0 54 chr6 77677855 77678169 -104737073 - AluSx SINE Alu -15 297 1 1009 217 24 48 chr6 77679293 77679421 -104735821 + L1MB4 LINE L1 5008 5138 -1008 2383 94 0 0 chr6 77679421 77679728 -104735514 + AluY SINE Alu 2 308 -3 1009 217 24 48 chr6 77679728 77679931 -104735311 + L1MB4 LINE L1 5138 5331 -815 539 196 76 51 chr6 77679940 77680098 -104735144 + MLT1B LTR MaLR 183 344 -46 4199 153 61 26 chr6 77680122 77680953 -104734289 + L1MB4 LINE L1 5320 6179 -1 210 37 0 0 chr6 77681296 77681323 -104733919 + (A)n Simple_repeat Simple_repeat 1 27 0 270 301 50 117 chr6 77681608 77681967 -104733275 - L2 LINE L2 0 3272 2938 322 336 30 60 chr6 77683356 77683591 -104731651 + MIR SINE MIR 21 248 -14 263 300 100 70 chr6 77684747 77685325 -104729917 - L2 LINE L2 -53 3219 2627 200 233 0 0 chr6 77686803 77686846 -104728396 - L3 LINE CR1 -3 1574 1532 2146 115 10 0 chr6 77686987 77687282 -104727960 - AluSx SINE Alu -14 298 1 810 231 73 58 chr6 77687653 77688003 -104727239 + MER21B LTR ERV1 422 750 -11 21 71 0 0 chr6 77688503 77688545 -104726697 + AT_rich Low_complexity Low_complexity 1 42 0 333 0 0 0 chr6 77688949 77688986 -104726256 + (TG)n Simple_repeat Simple_repeat 2 38 0 217 309 48 0 chr6 77689835 77689919 -104725323 - MIR3 SINE MIR -27 181 94 185 309 74 0 chr6 77690993 77691074 -104724168 + L2 LINE L2 3159 3245 -27 580 294 36 26 chr6 77692231 77692425 -104722817 - MER91A DNA MER1_type 0 196 1 1236 118 6 0 chr6 77692696 77692874 -104722368 - AluSg/x SINE Alu -2 310 132 2892 228 51 46 chr6 77693039 77693069 -104722173 - L1ME1 LINE L1 0 6166 6138 1228 249 116 44 chr6 77693069 77693588 -104721654 + MER68 LTR ERV1 3 558 -4 2892 228 51 46 chr6 77693588 77694661 -104720581 - L1ME1 LINE L1 -28 6138 5072 1487 105 0 10 chr6 77694661 77694861 -104720381 + AluSq SINE Alu 7 204 -109 180 0 0 0 chr6 77694871 77694891 -104720351 + (TA)n Simple_repeat Simple_repeat 2 21 0 2892 228 51 46 chr6 77694891 77695477 -104719765 - L1ME1 LINE L1 -1102 5064 4464 1057 170 0 22 chr6 77696009 77696191 -104719051 + AluJb SINE Alu 133 310 -2 995 155 130 5 chr6 77697610 77697810 -104717432 - AluJo SINE Alu -16 296 72 604 175 0 0 chr6 77698427 77698530 -104716712 + L1MC3 LINE L1 7237 7339 -446 1087 128 60 72 chr6 77698533 77698768 -104716474 + L1MC3 LINE L1 6727 6958 -827 363 259 135 18 chr6 77698959 77699129 -104716113 + Charlie8 DNA MER1_type 371 560 -1857 889 224 9 9 chr6 77699331 77699541 -104715701 + L1ME1 LINE L1 4739 4948 -1198 3293 135 64 86 chr6 77699549 77700348 -104714894 + L1MA8 LINE L1 5507 6287 -4 2160 227 37 54 chr6 77700373 77701436 -104713806 + L1ME1 LINE L1 4958 5984 -182 912 235 47 50 chr6 77701610 77701951 -104713291 + L1MC4 LINE L1 6723 7062 -980 578 300 34 15 chr6 77701978 77702245 -104712997 + L1MC4 LINE L1 7234 7505 -537 305 45 0 23 chr6 77703086 77703130 -104712112 + (TG)n Simple_repeat Simple_repeat 2 44 0 1860 147 10 14 chr6 77703546 77703838 -104711404 - AluJb SINE Alu -21 291 1 733 265 182 32 chr6 77704252 77704713 -104710529 + MLT1L LTR MaLR 1 530 -85 454 268 22 44 chr6 77704731 77704914 -104710328 + MLT1J2 LTR MaLR 31 209 -241 319 224 12 0 chr6 77705101 77705186 -104710056 + MLT1L LTR MaLR 530 615 0 236 180 0 0 chr6 77706319 77706369 -104708873 + (CA)n Simple_repeat Simple_repeat 1 50 0 388 236 113 15 chr6 77706473 77706668 -104708574 + L1MB3 LINE L1 2192 2405 -3741 490 266 73 23 chr6 77706699 77706876 -104708366 + MIR SINE MIR 74 259 -3 2436 94 0 0 chr6 77707064 77707373 -104707869 - AluY SINE Alu -2 309 1 12055 185 27 23 chr6 77707377 77711331 -104703911 - L1PA15 LINE L1 -3 6813 2887 2978 84 0 5 chr6 77711331 77711734 -104703508 - L1PA6 LINE L1 0 6154 5754 12055 185 27 23 chr6 77711734 77711751 -104703491 - L1PA15 LINE L1 -3929 2887 2872 33576 101 12 13 chr6 77711992 77717754 -104697488 - L1PA6 LINE L1 -386 5768 11 4295 192 67 28 chr6 77717765 77719327 -104695915 - L1PA15 LINE L1 -3928 2869 1242 1197 243 104 21 chr6 77719329 77720053 -104695189 + L1MB3 LINE L1 2389 3172 -2974 607 285 41 27 chr6 77720070 77720291 -104694951 + MIR SINE MIR 28 251 -11 1302 201 63 15 chr6 77720597 77720866 -104694376 + AluJo SINE Alu 3 284 -28 604 194 93 0 chr6 77721202 77721341 -104693901 + L1PB4 LINE L1 6002 6153 -3 1661 194 33 12 chr6 77721378 77721800 -104693442 + L1MB3 LINE L1 4405 4835 -1311 3186 139 30 9 chr6 77721802 77722370 -104692872 + LTR8A LTR ERV1 1 580 -147 30962 101 21 24 chr6 77722380 77728546 -104686696 + L1PA5 LINE L1 12 6154 0 654 262 12 12 chr6 77728556 77728724 -104686518 + LTR8 LTR ERV1 522 689 -2 3164 164 89 44 chr6 77728730 77729819 -104685423 + L1MB3 LINE L1 4839 5983 -200 1739 191 10 0 chr6 77730001 77730299 -104684943 - AluJo SINE Alu -11 301 1 26 64 0 0 chr6 77730588 77730635 -104684607 + AT_rich Low_complexity Low_complexity 1 47 0 443 247 54 107 chr6 77731365 77731701 -104683541 + Charlie2 DNA MER1_type 1 318 -2464 1561 210 129 61 chr6 77731709 77732364 -104682878 + Charlie2 DNA MER1_type 1855 2583 -279 1704 161 0 28 chr6 77732364 77732655 -104682587 + AluJo SINE Alu 1 283 -29 1561 210 129 61 chr6 77732655 77732850 -104682392 + Charlie2 DNA MER1_type 2583 2763 -99 29661 29 3 0 chr6 77732860 77737108 -104678134 + L1PA3 LINE L1 1895 6155 0 353 247 32 0 chr6 77737118 77737211 -104678031 + Charlie2 DNA MER1_type 2767 2862 0 1711 130 0 0 chr6 77737846 77738077 -104677165 + AluSx SINE Alu 1 231 -81 541 274 95 11 chr6 77738990 77739169 -104676073 - L2 LINE L2 0 3313 3120 311 262 10 58 chr6 77739843 77739946 -104675296 + L2 LINE L2 3209 3306 -7 1288 140 58 42 chr6 77740984 77741284 -104673958 + L1MA8 LINE L1 5976 6274 -17 41099 53 35 4 chr6 77741293 77747175 -104668067 + L1PA3 LINE L1 9 6073 -82 23 33 0 0 chr6 77748305 77748335 -104666907 + AT_rich Low_complexity Low_complexity 1 30 0 331 258 21 0 chr6 77749150 77749243 -104665999 + L1MC5 LINE L1 7810 7904 -57 2637 173 33 11 chr6 77749372 77749829 -104665413 + MLT1C LTR MaLR 1 467 0 213 39 0 0 chr6 77750262 77750288 -104664954 + (T)n Simple_repeat Simple_repeat 1 26 0 12037 89 4 1 chr6 77750293 77752621 -104662621 - L1PA7 LINE L1 0 6469 4135 11974 111 20 57 chr6 77752721 77755239 -104660003 - L1PA7 LINE L1 -3935 2526 5 292 309 84 22 chr6 77755689 77755858 -104659384 - MIR SINE MIR -64 198 16 353 317 145 13 chr6 77756003 77756230 -104659012 + MIR SINE MIR 6 262 0 21 0 0 0 chr6 77756258 77756279 -104658963 + AT_rich Low_complexity Low_complexity 1 21 0 206 279 147 0 chr6 77757359 77757427 -104657815 + MIR3 SINE MIR 107 184 -24 195 274 0 71 chr6 77757467 77757551 -104657691 - MIR SINE MIR -64 198 121 615 158 0 40 chr6 77757976 77758077 -104657165 + FLAM_A SINE Alu 4 100 -42 425 257 19 0 chr6 77758248 77758353 -104656889 + MLT1F1 LTR MaLR 1 107 -460 3257 100 60 23 chr6 77758605 77759084 -104656158 + LOR1a LTR ERV1 1 497 0 335 261 97 111 chr6 77759096 77759448 -104655794 + MARNA DNA Mariner 15 361 -225 2331 92 7 0 chr6 77759596 77759899 -104655343 - AluY SINE Alu -6 305 1 232 262 68 48 chr6 77759971 77760074 -104655168 - MIR SINE MIR -62 200 96 949 106 15 0 chr6 77760184 77760316 -104654926 - THE1C LTR MaLR 0 375 242 7255 133 14 41 chr6 77760422 77761627 -104653615 - THE1C-int LTR MaLR -400 1180 8 1833 145 110 23 chr6 77761635 77761980 -104653262 - THE1C LTR MaLR 0 375 1 324 0 0 0 chr6 77762077 77762113 -104653129 + (TA)n Simple_repeat Simple_repeat 1 36 0 306 0 0 0 chr6 77762112 77762146 -104653096 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 213 139 0 23 chr6 77763738 77763781 -104651461 + (TC)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr6 77764388 77764418 -104650824 + AT_rich Low_complexity Low_complexity 1 30 0 2605 97 27 43 chr6 77765438 77765643 -104649599 - THE1B LTR MaLR 0 364 166 2290 112 3 0 chr6 77765643 77765946 -104649296 + AluSq SINE Alu 1 304 -9 2605 97 27 43 chr6 77765946 77766110 -104649132 - THE1B LTR MaLR -198 166 1 23 0 0 0 chr6 77766233 77766256 -104648986 + AT_rich Low_complexity Low_complexity 1 23 0 2254 131 137 13 chr6 77766998 77767379 -104647863 + MSTA LTR MaLR 1 428 0 472 312 14 0 chr6 77767649 77767787 -104647455 + MIR3 SINE MIR 34 173 -35 247 295 47 54 chr6 77768267 77768362 -104646880 - L2 LINE L2 -4 3268 3173 2935 136 6 64 chr6 77768362 77768876 -104646366 + MER31A LTR ERV1 1 484 -1 247 295 47 54 chr6 77768876 77768909 -104646333 - L2 LINE L2 -99 3173 3141 1532 180 15 127 chr6 77769170 77769581 -104645661 - MLT1A1 LTR MaLR 0 365 1 719 242 66 24 chr6 77770959 77771170 -104644072 + MLT1G1 LTR MaLR 1 220 -375 249 83 0 0 chr6 77771178 77771214 -104644028 + (TCCCC)n Simple_repeat Simple_repeat 5 40 0 492 263 40 45 chr6 77772001 77772088 -104643154 - MER77 LTR ERV1 -4 601 532 2267 125 54 23 chr6 77772088 77772441 -104642801 + THE1B LTR MaLR 1 364 0 492 263 40 45 chr6 77772441 77772531 -104642711 - MER77 LTR ERV1 -73 532 443 606 196 123 45 chr6 77772541 77772720 -104642522 - MER77 LTR ERV1 -360 245 53 21 0 0 0 chr6 77773106 77773127 -104642115 + AT_rich Low_complexity Low_complexity 1 21 0 38541 92 9 6 chr6 77773682 77779804 -104635438 + L1PA6 LINE L1 11 6152 -2 827 259 109 18 chr6 77780283 77780617 -104634625 - MLT1G LTR MaLR -5 568 153 318 67 0 0 chr6 77780617 77780662 -104634580 + (GGGGA)n Simple_repeat Simple_repeat 4 48 0 426 69 0 0 chr6 77780701 77780759 -104634483 + (GGGGA)n Simple_repeat Simple_repeat 3 60 0 1068 159 21 21 chr6 77781190 77781379 -104633863 + MER5A DNA MER1_type 1 189 0 2253 80 0 40 chr6 77781502 77781834 -104633408 + AluY SINE Alu 1 311 0 2363 178 56 29 chr6 77782004 77782447 -104632795 + MSTB2 LTR MaLR 1 455 -2 492 209 89 44 chr6 77782571 77782729 -104632513 + MIR SINE MIR 98 262 0 183 189 0 0 chr6 77783894 77783931 -104631311 - L2 LINE L2 -1 3312 3276 1263 152 52 43 chr6 77784386 77784406 -104630836 - MER33 DNA MER1_type -2261 324 306 2081 139 30 24 chr6 77784406 77784779 -104630463 + THE1C LTR MaLR 1 375 0 1263 152 52 43 chr6 77784779 77785084 -104630158 - MER33 DNA MER1_type -2279 306 1 2388 199 15 82 chr6 77785089 77785683 -104629559 - MLT2B3 LTR ERVL 0 554 1 1835 193 42 33 chr6 77785842 77786303 -104628939 - MER31B LTR ERV1 0 661 2 24 32 0 0 chr6 77786482 77786513 -104628729 + AT_rich Low_complexity Low_complexity 1 31 0 280 202 29 106 chr6 77787049 77787097 -104628145 - MIR SINE MIR 0 262 225 2193 154 5 13 chr6 77787097 77787473 -104627769 + THE1C LTR MaLR 1 373 -2 280 202 29 106 chr6 77787473 77787528 -104627714 - MIR SINE MIR -37 225 167 335 308 8 43 chr6 77787597 77787714 -104627528 + MIR SINE MIR 11 123 -139 241 259 259 26 chr6 77787808 77787924 -104627318 - MIR3 SINE MIR -64 144 2 354 78 0 0 chr6 77788325 77788376 -104626866 - MLT2B2 LTR ERVL -464 51 1 26 0 0 0 chr6 77788591 77788617 -104626625 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 77788676 77788698 -104626544 + AT_rich Low_complexity Low_complexity 1 22 0 291 220 209 0 chr6 77788943 77789034 -104626208 - MIR3 SINE MIR -41 167 58 1023 149 101 43 chr6 77789256 77789411 -104625831 - AluJo SINE Alu -28 284 113 333 0 0 0 chr6 77789411 77789448 -104625794 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 1023 149 101 43 chr6 77789448 77789500 -104625742 - AluJo SINE Alu -199 113 65 22 0 0 0 chr6 77789990 77790012 -104625230 + AT_rich Low_complexity Low_complexity 1 22 0 326 285 131 7 chr6 77790217 77790354 -104624888 + MIR SINE MIR 17 170 -92 397 266 71 0 chr6 77790458 77790571 -104624671 + MIR SINE MIR 138 258 -4 25 31 0 0 chr6 77794605 77794637 -104620605 + GC_rich Low_complexity Low_complexity 1 32 0 312 279 155 17 chr6 77797533 77797649 -104617593 - MIR SINE MIR -61 147 41 399 21 0 0 chr6 77798740 77798788 -104616454 + (TG)n Simple_repeat Simple_repeat 1 48 0 189 74 0 0 chr6 77798788 77798815 -104616427 + (GA)n Simple_repeat Simple_repeat 2 28 0 1460 202 14 18 chr6 77798816 77799098 -104616144 - AluJo SINE Alu -31 281 1 586 231 56 19 chr6 77799278 77799438 -104615804 + MIR SINE MIR 25 190 -72 7546 26 1 0 chr6 77800101 77801680 -104613562 - L1PA4 LINE L1 -3 6152 4573 3646 24 4 0 chr6 77801680 77802139 -104613103 + L1P LINE L1 3602 4062 -2084 14031 27 0 0 chr6 77802242 77804682 -104610560 + L1PA4 LINE L1 3716 6155 0 837 89 0 0 chr6 77804682 77804805 -104610437 + L1MA4 LINE L1 5820 5942 -358 11536 214 39 17 chr6 77805027 77806641 -104608601 - L1MA9 LINE L1 -36 7695 6119 2282 165 18 15 chr6 77806641 77807034 -104608208 - MSTD LTR MaLR -2 394 1 11536 214 39 17 chr6 77807034 77807852 -104607390 - L1MA9 LINE L1 -1612 6119 5321 1849 135 31 55 chr6 77807852 77808236 -104607006 + THE1C LTR MaLR 1 375 0 11536 214 39 17 chr6 77808236 77810290 -104604952 - L1MA9 LINE L1 -2410 5321 3103 4418 252 21 57 chr6 77810303 77811808 -104603434 - L1MA9 LINE L1 -5711 1855 405 213 224 0 17 chr6 77812126 77812184 -104603058 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 336 24 0 0 chr6 77812188 77812229 -104603013 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 77812972 77812993 -104602249 + AT_rich Low_complexity Low_complexity 1 21 0 198 189 297 27 chr6 77814172 77814246 -104600996 - L2 LINE L2 -10 3303 3210 285 51 0 0 chr6 77814506 77814545 -104600697 + (TG)n Simple_repeat Simple_repeat 1 39 0 1452 138 59 50 chr6 77814901 77815221 -104600021 - L1MA9 LINE L1 -1 6311 5989 877 184 46 0 chr6 77815406 77815580 -104599662 - MER5A DNA MER1_type 0 189 8 398 325 152 25 chr6 77815597 77816239 -104599003 - L2 LINE L2 -221 3051 2328 183 80 0 0 chr6 77816245 77816270 -104598972 + (A)n Simple_repeat Simple_repeat 1 25 0 542 172 234 21 chr6 77816820 77816965 -104598277 - MER5A DNA MER1_type 0 189 14 398 299 102 7 chr6 77816998 77817145 -104598097 + MIR SINE MIR 14 174 -88 21 36 0 0 chr6 77817224 77817252 -104597990 + AT_rich Low_complexity Low_complexity 1 28 0 194 253 126 11 chr6 77817320 77817407 -104597835 - MIR SINE MIR -25 237 141 394 224 140 0 chr6 77817413 77817520 -104597722 + MIR SINE MIR 117 238 -24 23 54 0 0 chr6 77817570 77817607 -104597635 + AT_rich Low_complexity Low_complexity 1 37 0 612 246 23 23 chr6 77817781 77817956 -104597286 + MER97b DNA MER1_type? 2 176 -877 854 159 4 7 chr6 77818095 77818324 -104596918 + AluJo SINE Alu 2 282 -30 197 65 32 0 chr6 77818329 77818360 -104596882 + (CAA)n Simple_repeat Simple_repeat 2 33 0 24 32 0 0 chr6 77818417 77818448 -104596794 + AT_rich Low_complexity Low_complexity 1 31 0 647 211 113 38 chr6 77818589 77818774 -104596468 + MIR SINE MIR 1 199 -63 365 212 35 133 chr6 77818781 77819007 -104596235 - L1M4 LINE L1 -1271 4875 4672 282 250 12 0 chr6 77819013 77819097 -104596145 - L1M4 LINE L1 -2607 3539 3455 8909 159 35 9 chr6 77819190 77820683 -104594559 + L1MA6 LINE L1 3583 5036 -1264 902 66 8 0 chr6 77820683 77820803 -104594439 + L1PB1 LINE L1 6029 6151 0 8909 159 35 9 chr6 77820803 77821460 -104593782 + L1MA6 LINE L1 5036 5808 -492 402 74 0 0 chr6 77821460 77821514 -104593728 + (CA)n Simple_repeat Simple_repeat 2 55 0 8909 159 35 9 chr6 77821514 77822017 -104593225 + L1MA6 LINE L1 5808 6297 -3 628 197 29 27 chr6 77822024 77822358 -104592884 - L1M4 LINE L1 -2829 3317 2859 376 255 176 13 chr6 77823192 77823345 -104591897 - MIR SINE MIR 0 262 85 213 65 0 0 chr6 77823972 77824003 -104591239 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2548 230 34 18 chr6 77824069 77824683 -104590559 + MER45B DNA AcHobo 1 624 -416 12647 204 14 3 chr6 77824688 77827603 -104587639 - L1 LINE L1 -949 5197 2252 7749 190 133 5 chr6 77827601 77829593 -104585649 - L1PBa LINE L1 -4610 2253 6 * 474 298 53 0 chr6 77829715 77829886 -104585356 - L1M4 LINE L1 -2011 4135 3956 748 267 127 39 chr6 77830064 77830708 -104584534 - HAL1b LINE L1 -457 891 191 2175 128 0 0 chr6 77831642 77831939 -104583303 - AluSx SINE Alu -15 297 1 589 300 86 32 chr6 77832796 77833016 -104582226 + MIR SINE MIR 22 253 -9 2945 82 33 0 chr6 77833365 77833790 -104581452 - L1MA1 LINE L1 0 6302 5864 281 242 132 0 chr6 77833843 77833934 -104581308 - L2 LINE L2 -47 3266 3164 319 328 76 18 chr6 77834318 77834489 -104580753 - MIR SINE MIR -57 205 25 21 0 0 0 chr6 77834929 77834950 -104580292 + AT_rich Low_complexity Low_complexity 1 21 0 296 306 147 18 chr6 77835713 77835883 -104579359 - L3 LINE CR1 -4 1573 1382 602 308 65 29 chr6 77835898 77836174 -104579068 - L3 LINE CR1 -299 1278 993 360 284 119 116 chr6 77836231 77836768 -104578474 - L2 LINE L2 0 3272 2736 986 228 77 105 chr6 77837415 77837657 -104577585 + MLT1D LTR MaLR 16 263 -242 2769 125 16 23 chr6 77837657 77837700 -104577542 - MSTA LTR MaLR 0 428 386 1572 181 0 95 chr6 77837700 77838037 -104577205 + AluJb SINE Alu 1 305 -7 2769 125 16 23 chr6 77838037 77838424 -104576818 - MSTA LTR MaLR -42 386 1 986 228 77 105 chr6 77838424 77838609 -104576633 + MLT1D LTR MaLR 263 429 -76 1826 134 48 24 chr6 77838609 77838900 -104576342 + AluJo SINE Alu 1 298 -14 986 228 77 105 chr6 77838900 77838975 -104576267 + MLT1D LTR MaLR 429 505 0 518 307 33 92 chr6 77839241 77839720 -104575522 - L2 LINE L2 -2563 751 301 387 362 37 0 chr6 77840132 77840295 -104574947 - L3 LINE CR1 -958 619 451 399 255 174 19 chr6 77840351 77840512 -104574730 - MIR SINE MIR -49 213 28 1640 206 72 35 chr6 77841005 77841494 -104573748 - MER84 LTR ERV1 0 507 1 216 259 86 80 chr6 77841598 77841760 -104573482 - L3 LINE CR1 -1143 434 272 468 206 149 14 chr6 77841970 77842111 -104573131 + MER50 LTR ERV1 9 168 -566 1728 118 17 25 chr6 77842349 77842696 -104572546 - MER4A LTR ERV1 0 664 261 495 165 21 10 chr6 77842696 77842793 -104572449 - MER4A LTR ERV1 -566 98 1 983 155 58 53 chr6 77842856 77843082 -104572160 + MER50 LTR ERV1 508 734 0 1587 165 70 23 chr6 77843586 77843931 -104571311 + MLT1A1 LTR MaLR 1 361 -4 248 105 0 0 chr6 77844129 77844167 -104571075 + Alu SINE Alu 33 70 -232 1506 218 91 71 chr6 77844383 77844783 -104570459 + MLT1E2 LTR MaLR 52 467 -159 1809 177 3 16 chr6 77844783 77845088 -104570154 - AluJo SINE Alu -11 301 1 1506 218 91 71 chr6 77845088 77845225 -104570017 + MLT1E2 LTR MaLR 467 600 -26 330 287 176 32 chr6 77845470 77845658 -104569584 + MIR SINE MIR 48 262 0 279 0 0 0 chr6 77846415 77846446 -104568796 + (TG)n Simple_repeat Simple_repeat 1 31 0 1074 147 66 0 chr6 77846737 77846934 -104568308 - L1PA16 LINE L1 -1 6165 5956 285 267 230 24 chr6 77847059 77847224 -104568018 + MIR3 SINE MIR 4 202 -6 234 105 0 0 chr6 77847505 77847543 -104567699 + (TG)n Simple_repeat Simple_repeat 2 39 0 269 330 97 32 chr6 77848561 77848771 -104566471 + MIR SINE MIR 4 218 -34 445 226 45 55 chr6 77850436 77850563 -104564679 - MIR3 SINE MIR -14 194 69 2202 136 0 0 chr6 77850807 77851108 -104564134 - AluSx SINE Alu -11 301 1 2239 123 12 54 chr6 77852756 77853185 -104562057 + MER83 LTR ERV1 1 411 -37 2192 106 3 0 chr6 77855348 77855653 -104559589 - AluSx SINE Alu 0 306 1 184 211 70 18 chr6 77856163 77856220 -104559022 - MER5A DNA MER1_type -114 75 16 632 294 55 30 chr6 77856679 77856914 -104558328 - MIR SINE MIR -21 241 1 25 0 0 0 chr6 77857264 77857289 -104557953 + AT_rich Low_complexity Low_complexity 1 25 0 776 186 8 0 chr6 77857629 77857758 -104557484 - FRAM SINE Alu -49 127 1 637 256 72 0 chr6 77857797 77858020 -104557222 - L1MC/D LINE L1 -1996 5812 5574 1091 219 83 36 chr6 77858062 77858526 -104556716 - MER39 LTR ERV1 -25 682 9 393 281 32 24 chr6 77858530 77858880 -104556362 - L1MC/D LINE L1 -747 5399 5191 622 283 47 26 chr6 77859434 77859625 -104555617 - MIR SINE MIR -50 212 18 350 220 76 68 chr6 77859846 77859964 -104555278 + L2 LINE L2 3154 3272 0 331 256 128 46 chr6 77859980 77860175 -104555067 - L1MC4a LINE L1 -1617 6191 5981 462 61 0 0 chr6 77860764 77860830 -104554412 + (TATG)n Simple_repeat Simple_repeat 2 67 0 687 205 0 0 chr6 77860835 77860952 -104554290 - FLAM_A SINE Alu -16 117 1 221 333 0 0 chr6 77861787 77861847 -104553395 + L2 LINE L2 3208 3267 -5 11974 169 31 26 chr6 77862435 77864713 -104550529 - L1MA6 LINE L1 0 6300 3999 2339 155 39 10 chr6 77864713 77865127 -104550115 - MSTA LTR MaLR 0 428 3 11974 169 31 26 chr6 77865127 77866580 -104548662 - L1MA6 LINE L1 -2301 3999 2554 229 295 16 0 chr6 77866793 77866854 -104548388 + L2 LINE L2 3248 3309 -4 410 159 53 6 chr6 77867927 77868097 -104547145 + (TA)n Simple_repeat Simple_repeat 1 178 0 2165 109 0 13 chr6 77868686 77868989 -104546253 - AluSg1 SINE Alu -10 299 1 2454 50 0 0 chr6 77869020 77869349 -104545893 + AluY SINE Alu 1 311 0 1542 167 82 72 chr6 77869541 77869931 -104545311 - MSTD LTR MaLR -2 394 1 298 234 40 81 chr6 77870771 77870895 -104544347 + MIR SINE MIR 21 139 -69 23 0 0 0 chr6 77871232 77871255 -104543987 + AT_rich Low_complexity Low_complexity 1 23 0 196 346 0 0 chr6 77872897 77872949 -104542293 - MIR3 SINE MIR -13 195 144 391 246 22 87 chr6 77872984 77873122 -104542120 - MIR3 SINE MIR -67 141 13 423 193 84 59 chr6 77873515 77873634 -104541608 - MER5C DNA MER1_type -200 124 3 426 258 113 0 chr6 77873893 77874017 -104541225 + MIR SINE MIR 2 139 -123 412 233 142 8 chr6 77874372 77874492 -104540750 - L2 LINE L2 -196 3076 2941 4749 93 10 16 chr6 77874970 77875680 -104539562 + L1MA2 LINE L1 5599 6304 0 32 0 0 0 chr6 77875680 77875712 -104539530 + AT_rich Low_complexity Low_complexity 1 32 0 423 287 118 45 chr6 77876956 77877642 -104537600 - L1MEd LINE L1 -4512 2028 1293 21 36 0 0 chr6 77877817 77877845 -104537397 + AT_rich Low_complexity Low_complexity 1 28 0 1116 242 52 60 chr6 77877845 77878341 -104536901 - L1ME3A LINE L1 -10 6160 5669 755 295 161 25 chr6 77878908 77879498 -104535744 + L2 LINE L2 1868 2537 -777 215 303 68 38 chr6 77880006 77880138 -104535104 + L2 LINE L2 3137 3272 0 265 390 50 0 chr6 77880663 77880804 -104534438 + MIR SINE MIR 28 175 -87 793 256 101 9 chr6 77880914 77881141 -104534101 + MIR SINE MIR 15 262 0 272 261 96 26 chr6 77884458 77884573 -104530669 - MIR SINE MIR -15 247 125 343 20 59 0 chr6 77884846 77884897 -104530345 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 234 0 0 0 chr6 77884907 77884933 -104530309 + (CA)n Simple_repeat Simple_repeat 1 26 0 452 301 53 0 chr6 77886822 77886955 -104528287 - MIR3 SINE MIR -21 187 48 611 115 0 18 chr6 77886955 77887068 -104528174 + LTR1 LTR ERV1 1 111 -674 1684 164 6 42 chr6 77887070 77887406 -104527836 + LTR1 LTR ERV1 462 785 0 22 35 0 0 chr6 77889617 77889646 -104525596 + AT_rich Low_complexity Low_complexity 1 29 0 220 256 220 63 chr6 77889655 77889846 -104525396 - L3 LINE CR1 -5 1572 1352 3921 178 22 7 chr6 77890195 77890915 -104524327 - MER44D DNA MER2_type 0 605 3 1789 191 67 45 chr6 77890916 77891409 -104523833 - MLT1D LTR MaLR -1 504 1 6286 109 21 20 chr6 77894404 77895578 -104519664 + L1MA3 LINE L1 5131 6305 0 11597 175 27 57 chr6 77895792 77902368 -104512874 - L1PB2 LINE L1 -7 6201 1 52 64 0 0 chr6 77902620 77902714 -104512528 + AT_rich Low_complexity Low_complexity 1 94 0 282 296 80 53 chr6 77902753 77903017 -104512225 - L1ME LINE L1 -527 5594 5324 21 0 0 0 chr6 77903031 77903052 -104512190 + AT_rich Low_complexity Low_complexity 1 21 0 248 217 36 36 chr6 77903327 77903410 -104511832 - L1ME3A LINE L1 -224 5946 5864 401 279 59 0 chr6 77903463 77903599 -104511643 + LTR16B LTR ERVL 213 356 -108 833 195 164 63 chr6 77903600 77904006 -104511236 - MLT1C LTR MaLR -1 466 12 537 291 110 10 chr6 77904201 77904500 -104510742 - LTR16B LTR ERVL -130 334 6 1563 153 91 57 chr6 77904609 77904933 -104510309 + MLT1A1 LTR MaLR 1 339 -26 213 39 0 0 chr6 77904933 77904959 -104510283 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1563 153 91 57 chr6 77904959 77904987 -104510255 + MLT1A1 LTR MaLR 339 365 0 320 282 0 40 chr6 77905066 77905215 -104510027 - HERVL LTR ERVL -367 5287 5145 536 340 51 30 chr6 77905896 77906387 -104508855 - HERVL LTR ERVL -1065 4420 3920 378 0 0 0 chr6 77907742 77907784 -104507458 + (TG)n Simple_repeat Simple_repeat 1 42 0 602 204 33 0 chr6 77908950 77909102 -104506140 - MER69 DNA AcHobo -13 2513 2357 1984 132 0 4 chr6 77909157 77909482 -104505760 - AluSx SINE Alu 0 326 3 792 143 93 7 chr6 77909482 77909622 -104505620 - MER45A DNA AcHobo -25 153 2 455 223 64 25 chr6 77909627 77909829 -104505413 - MER69 DNA AcHobo -177 2349 2140 444 29 58 0 chr6 77909831 77909900 -104505342 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 650 171 0 20 chr6 77909901 77910047 -104505195 - MER69 DNA AcHobo -374 2152 2010 782 275 142 33 chr6 77910067 77910427 -104504815 - MER69 DNA AcHobo -2020 506 108 192 363 112 19 chr6 77911718 77911977 -104503265 + L2 LINE L2 2588 2870 -444 245 294 17 63 chr6 77913230 77913372 -104501870 - MIR SINE MIR -64 198 59 1952 134 7 3 chr6 77913651 77913942 -104501300 + AluSx SINE Alu 3 294 -18 21 36 0 0 chr6 77914894 77914922 -104500320 + AT_rich Low_complexity Low_complexity 1 28 0 394 318 8 95 chr6 77915264 77915506 -104499736 + L2 LINE L2 3047 3267 -5 227 137 0 20 chr6 77916402 77916453 -104498789 + (GAA)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr6 77916592 77916617 -104498625 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr6 77917185 77917206 -104498036 + AT_rich Low_complexity Low_complexity 1 21 0 1989 113 0 73 chr6 77917279 77917607 -104497635 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr6 77917696 77917717 -104497525 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr6 77918250 77918284 -104496958 + AT_rich Low_complexity Low_complexity 1 34 0 342 129 14 29 chr6 77918466 77918536 -104496706 - L1PB2 LINE L1 -6 6145 6077 6945 171 56 17 chr6 77918545 77921207 -104494035 - L1PBa LINE L1 -2576 4286 2271 2234 103 7 0 chr6 77921207 77921497 -104493745 - AluSp SINE Alu -21 292 1 6945 171 56 17 chr6 77921497 77923861 -104491381 - L1PBa LINE L1 -4591 2271 1 358 265 152 81 chr6 77923907 77924216 -104491026 + L3 LINE CR1 1245 1575 -2 181 268 102 127 chr6 77925393 77925459 -104489783 + MER5B DNA MER1_type 1 67 -111 2286 81 7 14 chr6 77925459 77925755 -104489487 + AluSq SINE Alu 1 294 -19 181 268 102 127 chr6 77925755 77925845 -104489397 + MER5B DNA MER1_type 67 153 -25 238 336 95 9 chr6 77925909 77926025 -104489217 - MIR3 SINE MIR -75 133 8 347 0 23 0 chr6 77926129 77926172 -104489070 + (CA)n Simple_repeat Simple_repeat 1 44 0 321 143 32 16 chr6 77927245 77927308 -104487934 - L1MC/D LINE L1 -470 5772 5709 32 0 0 0 chr6 77927377 77927409 -104487833 + AT_rich Low_complexity Low_complexity 1 32 0 1027 207 28 9 chr6 77927413 77927626 -104487616 - U3 snRNA snRNA 0 217 1 256 276 16 24 chr6 77927718 77927841 -104487401 - L1MC/D LINE L1 -1983 5825 5704 1109 264 75 33 chr6 77927900 77928324 -104486918 + LTR16B LTR ERVL 23 464 0 489 306 19 13 chr6 77928340 77928497 -104486745 - L1MC/D LINE L1 -2199 5609 5452 7133 15 0 0 chr6 77928634 77929480 -104485762 - L1PA2 LINE L1 -4 6151 5306 5749 30 0 0 chr6 77929480 77930201 -104485041 + L1PA2 LINE L1 4573 5293 -853 2312 93 0 10 chr6 77930224 77930524 -104484718 - AluSc SINE Alu -12 297 1 4103 172 44 44 chr6 77931255 77932429 -104482813 - L1MD1 LINE L1 0 6242 5068 1244 150 5 10 chr6 77932436 77932636 -104482606 - AluSg/x SINE Alu -7 303 105 3150 224 53 34 chr6 77932652 77933717 -104481525 - L1MD1 LINE L1 -1092 5054 3969 1367 246 53 19 chr6 77933717 77934561 -104480681 + L1MEc LINE L1 1786 2762 -3453 1792 152 33 3 chr6 77934561 77934897 -104480345 + L1MD1 LINE L1 5896 6241 -1 917 121 0 15 chr6 77934914 77935046 -104480196 + FRAM SINE Alu 24 153 -23 5298 184 43 2 chr6 77935051 77936033 -104479209 + L1MA3 LINE L1 14 1035 -6530 7082 135 14 5 chr6 77936038 77938385 -104476857 + L1MA3 LINE L1 5360 7724 0 21 0 0 0 chr6 77938385 77938406 -104476836 + AT_rich Low_complexity Low_complexity 1 21 0 1750 247 44 25 chr6 77938408 77938881 -104476361 + MLT1E2 LTR MaLR 116 597 -29 3303 293 30 50 chr6 77939088 77940712 -104474530 + L1PA13 LINE L1 608 2092 -5489 4112 201 11 1 chr6 77940712 77941533 -104473709 + L1PA13 LINE L1 3613 4441 -3143 339 194 0 0 chr6 77941543 77941610 -104473632 + L1 LINE L1 2963 3029 -3117 36929 44 3 4 chr6 77941630 77946877 -104468365 + L1PA2 LINE L1 900 6132 -159 11081 172 14 26 chr6 77946877 77949984 -104465258 + L1PA13 LINE L1 4463 7599 -2 36929 44 3 4 chr6 77949984 77950140 -104465102 + L1PA2 LINE L1 6132 6287 -4 1563 120 66 4 chr6 77950162 77950404 -104464838 + AluSq SINE Alu 1 257 -56 687 320 146 34 chr6 77950431 77951116 -104464126 - L1M4 LINE L1 -1211 4935 4153 186 0 88 0 chr6 77951116 77951150 -104464092 + (TA)n Simple_repeat Simple_repeat 1 37 0 687 320 146 34 chr6 77951150 77951233 -104464009 - L1M4 LINE L1 -1993 4153 4081 205 62 146 0 chr6 77951233 77951281 -104463961 + (TTAA)n Simple_repeat Simple_repeat 4 58 0 229 275 107 23 chr6 77951392 77951523 -104463719 - L1M4 LINE L1 -2199 3947 3806 267 233 67 11 chr6 77951779 77951869 -104463373 - HAL1 LINE L1 -976 1531 1437 364 196 167 0 chr6 77951877 77951979 -104463263 - L2 LINE L2 -1 3312 3194 415 291 54 89 chr6 77952009 77952267 -104462975 - HAL1 LINE L1 -1144 1363 1115 405 0 0 0 chr6 77954236 77954281 -104460961 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 307 182 30 101 chr6 77955457 77955556 -104459686 - L2 LINE L2 -2 3270 3179 * 316 235 147 4 chr6 77955541 77955663 -104459579 + MIR SINE MIR 19 157 -62 299 203 0 0 chr6 77956537 77956596 -104458646 - LTR16C LTR ERVL -16 475 417 213 65 0 0 chr6 77957626 77957657 -104457585 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 373 43 0 0 chr6 77957657 77957703 -104457539 - L1PA7 LINE L1 -15 6139 6094 616 253 40 0 chr6 77957787 77957937 -104457305 - MIR SINE MIR -52 210 55 34 24 0 0 chr6 77958798 77958839 -104456403 + AT_rich Low_complexity Low_complexity 1 41 0 462 226 168 13 chr6 77958902 77959057 -104456185 - MER5A DNA MER1_type -1 188 10 252 100 0 0 chr6 77959094 77959134 -104456108 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 520 283 11 63 chr6 77959264 77959391 -104455851 + MER5A DNA MER1_type 9 124 -65 1695 164 66 0 chr6 77959391 77959678 -104455564 - AluSx SINE Alu -6 306 1 520 283 11 63 chr6 77959678 77959741 -104455501 + MER5A DNA MER1_type 124 189 0 194 408 0 13 chr6 77959852 77959928 -104455314 - MIR SINE MIR -170 92 18 366 107 0 0 chr6 77960312 77960368 -104454874 + (TG)n Simple_repeat Simple_repeat 2 57 0 209 184 0 0 chr6 77961396 77961434 -104453808 + (TG)n Simple_repeat Simple_repeat 1 38 0 329 222 42 0 chr6 77963039 77963111 -104452131 - MER5C DNA MER1_type -216 108 34 1619 183 102 0 chr6 77963114 77963436 -104451806 - MSTA LTR MaLR -73 355 1 300 70 0 0 chr6 77963946 77963989 -104451253 + (TG)n Simple_repeat Simple_repeat 1 43 0 3420 200 14 20 chr6 77964048 77964808 -104450434 - L1MD2 LINE L1 -3 6356 5601 221 299 78 0 chr6 77965027 77965104 -104450138 - MIR SINE MIR -133 129 47 432 272 43 19 chr6 77965131 77965293 -104449949 - MER112 DNA MER1_type -29 231 66 2201 122 61 3 chr6 77968147 77968491 -104446751 + THE1B LTR MaLR 1 364 0 185 380 0 0 chr6 77968536 77968607 -104446635 - MIR SINE MIR -106 102 32 563 339 83 17 chr6 77968723 77969074 -104446168 + L3 LINE CR1 1200 1573 -4 213 94 0 0 chr6 77969303 77969335 -104445907 + (GAATG)n Simple_repeat Simple_repeat 1 32 0 1752 164 36 0 chr6 77970872 77971152 -104444090 - AluJb SINE Alu -22 290 1 1694 198 54 52 chr6 77971183 77971588 -104443654 + L1PA12 LINE L1 10 415 -7166 403 70 18 0 chr6 77971596 77971680 -104443562 + L1PA11 LINE L1 6107 6191 0 2395 170 117 6 chr6 77971751 77972257 -104442985 - L1MD1 LINE L1 -20 6222 5661 * 2430 243 34 13 chr6 77972255 77973087 -104442155 - L1MDa LINE L1 -2880 3660 2812 * 3230 184 54 32 chr6 77973085 77973652 -104441590 - L1MDa LINE L1 -3938 2602 2010 2360 92 0 7 chr6 77973652 77973956 -104441286 - AluSx SINE Alu -10 302 1 3230 184 54 32 chr6 77973956 77974226 -104441016 - L1MDa LINE L1 -4530 2010 1747 3162 251 57 30 chr6 77974245 77975090 -104440152 - L1MDa LINE L1 -5655 885 18 324 319 65 22 chr6 77975123 77975352 -104439890 - L1MEd LINE L1 -5289 830 592 230 255 0 0 chr6 77975522 77975569 -104439673 + (TG)n Simple_repeat Simple_repeat 1 47 0 493 221 37 37 chr6 77975919 77976082 -104439160 - MER103 DNA DNA -1 165 3 293 331 93 7 chr6 77976197 77976348 -104438894 + MIR3 SINE MIR 21 184 -24 28 0 0 0 chr6 77976999 77977027 -104438215 + AT_rich Low_complexity Low_complexity 1 28 0 334 300 29 71 chr6 77978290 77978460 -104436782 + L2 LINE L2 2951 3113 -159 875 166 31 6 chr6 77978531 77978694 -104436548 + MER3 DNA MER1_type 3 122 -87 309 195 0 37 chr6 77978750 77978832 -104436410 + MER3 DNA MER1_type 131 209 0 269 176 0 20 chr6 77978788 77978839 -104436403 - MER3 DNA MER1_type -119 90 41 * 644 230 67 18 chr6 77979008 77979173 -104436069 + MIR SINE MIR 29 201 -61 2171 175 54 7 chr6 77979258 77979663 -104435579 + MSTB LTR MaLR 1 424 -2 394 335 33 23 chr6 77980384 77980516 -104434726 - MIR SINE MIR -66 142 22 274 294 142 82 chr6 77982123 77982511 -104432731 - L2 LINE L2 -5 3267 2857 232 325 102 51 chr6 77982638 77982795 -104432447 - L2 LINE L2 -1060 2254 2090 776 112 0 0 chr6 77983262 77983369 -104431873 + U6 snRNA snRNA 1 107 0 15008 177 25 14 chr6 77983373 77987332 -104427910 + L1PA15 LINE L1 2170 6155 0 629 295 41 87 chr6 77987533 77988095 -104427147 - L2 LINE L2 -15 3298 2761 437 235 31 0 chr6 77988158 77988256 -104426986 - MER5A DNA MER1_type -83 106 6 774 337 119 8 chr6 77988258 77988629 -104426613 - L2 LINE L2 -2816 498 87 949 237 86 62 chr6 77988996 77989208 -104426034 + L1M4 LINE L1 2674 2879 -3267 1684 197 3 13 chr6 77989208 77989512 -104425730 + AluJo SINE Alu 1 301 -11 949 237 86 62 chr6 77989512 77989844 -104425398 + L1M4 LINE L1 2879 3231 -2915 242 54 0 27 chr6 77989844 77989881 -104425361 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 439 324 67 9 chr6 77989891 77990237 -104425005 + L1M4 LINE L1 3390 3755 -2391 2226 117 0 3 chr6 77990327 77990634 -104424608 + AluSc SINE Alu 1 306 -3 324 118 0 0 chr6 77990739 77990790 -104424452 - Alu SINE Alu -10 292 242 1036 80 0 0 chr6 77991090 77991215 -104424027 + AluSq/x SINE Alu 19 143 -169 21 57 0 0 chr6 77991860 77991895 -104423347 + AT_rich Low_complexity Low_complexity 1 35 0 1164 148 30 21 chr6 77992092 77992329 -104422913 + L1MB3 LINE L1 5943 6181 -2 383 332 32 18 chr6 77992593 77992813 -104422429 + HAL1b LINE L1 380 602 -746 22 70 0 0 chr6 77993392 77993435 -104421807 + AT_rich Low_complexity Low_complexity 1 43 0 402 214 0 0 chr6 77993464 77993534 -104421708 + MER21B LTR ERV1 15 84 -779 341 243 14 0 chr6 77993644 77993714 -104421528 + MER21B LTR ERV1 19 89 -774 2954 205 124 14 chr6 77993716 77994432 -104420810 + MER21B LTR ERV1 42 836 -27 2266 107 3 0 chr6 77994578 77994876 -104420366 + AluSp SINE Alu 1 299 -14 2061 236 117 37 chr6 77994977 77995935 -104419307 + L1MC5 LINE L1 6615 7552 -409 243 246 76 59 chr6 77995996 77996114 -104419128 + L1ME3 LINE L1 5962 6081 -81 505 287 12 12 chr6 77996367 77996528 -104418714 + LTR41 LTR ERVL 21 193 -602 304 164 0 49 chr6 77996715 77996776 -104418466 - Zaphod DNA AcHobo 0 4031 3974 252 169 34 17 chr6 77996773 77996832 -104418410 - Zaphod DNA AcHobo -2679 1352 1293 * 1071 60 0 0 chr6 77996834 77996968 -104418274 - L1PA10 LINE L1 0 6168 6035 649 230 132 30 chr6 77997136 77997322 -104417920 + LTR50 LTR ERVL 504 726 -69 2042 89 60 3 chr6 77997322 77997604 -104417638 - AluSc SINE Alu -11 298 1 649 230 132 30 chr6 77997604 77997682 -104417560 + LTR50 LTR ERVL 726 795 0 1822 254 32 45 chr6 78048839 78049395 -104365847 - MLT1H1 LTR MaLR -2 553 5 2112 93 0 4 chr6 78049647 78049927 -104365315 - AluSx SINE Alu -33 279 1 501 250 191 0 chr6 78049984 78050136 -104365106 - MIR3 SINE MIR -1 207 27 192 200 22 22 chr6 78050321 78050366 -104364876 - L2 LINE L2 -8 3305 3261 1052 89 7 0 chr6 78050516 78050650 -104364592 + AluSg/x SINE Alu 156 293 -19 601 12 37 0 chr6 78050650 78050731 -104364511 + (CAGAA)n Simple_repeat Simple_repeat 2 85 0 1052 89 7 0 chr6 78050731 78050742 -104364500 + AluSg/x SINE Alu 293 302 -10 7537 26 1 0 chr6 78051937 78053516 -104361726 - L1PA4 LINE L1 -3 6152 4573 * 15205 25 0 0 chr6 78053503 78056070 -104359172 + L1PA4 LINE L1 3587 6155 0 813 82 0 0 chr6 78056083 78056193 -104359049 + L1MA4A LINE L1 5833 5942 -361 26 30 0 0 chr6 78056458 78056491 -104358751 + GC_rich Low_complexity Low_complexity 1 33 0 340 281 104 95 chr6 78056561 78057119 -104358123 + L1M2 LINE L1 528 1090 -5759 288 0 0 0 chr6 78057273 78057305 -104357937 + (A)n Simple_repeat Simple_repeat 1 32 0 260 224 208 48 chr6 78057841 78057966 -104357276 - MIR SINE MIR -33 229 85 299 296 31 10 chr6 78058410 78058508 -104356734 + L2 LINE L2 2487 2586 -728 1837 257 112 44 chr6 78058510 78059375 -104355867 - L2 LINE L2 -873 2441 1518 344 298 80 46 chr6 78059394 78059545 -104355697 - MIR SINE MIR -78 184 29 264 326 11 11 chr6 78061568 78061660 -104353582 - MIR3 SINE MIR -5 203 112 22 35 0 0 chr6 78062662 78062691 -104352551 + AT_rich Low_complexity Low_complexity 1 29 0 228 67 0 0 chr6 78062851 78062881 -104352361 + (CA)n Simple_repeat Simple_repeat 2 31 0 276 298 167 40 chr6 78063222 78063438 -104351804 + MIR SINE MIR 3 243 -19 307 333 10 0 chr6 78063441 78063540 -104351702 + CT-rich Low_complexity Low_complexity 5 104 0 1008 207 16 0 chr6 78063599 78063792 -104351450 - MER58A DNA MER1_type -2 222 27 27 0 0 0 chr6 78064191 78064218 -104351024 + AT_rich Low_complexity Low_complexity 1 27 0 191 86 0 29 chr6 78064700 78064735 -104350507 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr6 78065509 78065530 -104349712 + AT_rich Low_complexity Low_complexity 1 21 0 1849 31 0 0 chr6 78065530 78065752 -104349490 - L1PA4 LINE L1 -3 6152 5931 724 235 189 9 chr6 78068332 78068549 -104346693 - MIR SINE MIR 0 262 7 2295 75 14 0 chr6 78070182 78070494 -104344748 - AluSg SINE Alu 0 316 1 1620 148 138 16 chr6 78070739 78071044 -104344198 - MER2 DNA MER2_type -1 343 2 22 0 0 0 chr6 78075229 78075251 -104339991 + AT_rich Low_complexity Low_complexity 1 22 0 181 354 79 51 chr6 78078146 78078361 -104336881 + MIR SINE MIR 21 241 -21 2378 83 0 7 chr6 78079168 78079470 -104335772 + AluSx SINE Alu 1 300 -12 186 340 66 9 chr6 78079562 78079668 -104335574 - MIR SINE MIR -115 147 36 286 299 196 14 chr6 78080033 78080247 -104334995 + L2 LINE L2 2397 2649 -665 211 267 117 0 chr6 78080286 78080346 -104334896 + L2 LINE L2 3242 3308 -5 268 286 59 42 chr6 78081897 78082016 -104333226 + MIR SINE MIR 34 154 -108 201 273 0 0 chr6 78082149 78082193 -104333049 + A-rich Low_complexity Low_complexity 4 47 0 29 47 0 0 chr6 78082336 78082379 -104332863 + AT_rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr6 78083001 78083027 -104332215 + (TA)n Simple_repeat Simple_repeat 2 27 0 2286 207 108 55 chr6 78083198 78083991 -104331251 + L1ME2 LINE L1 4408 5242 -904 300 53 0 0 chr6 78083993 78084031 -104331211 + (CA)n Simple_repeat Simple_repeat 2 39 0 322 287 23 0 chr6 78084031 78084118 -104331124 - L1MC4 LINE L1 -1339 6703 6615 305 282 47 0 chr6 78084130 78084215 -104331027 - L1MC4 LINE L1 -1340 6702 6614 * 329 311 0 0 chr6 78084151 78084241 -104331001 + L1MC4 LINE L1 6614 6703 -1339 204 158 0 0 chr6 78084242 78084280 -104330962 + (TA)n Simple_repeat Simple_repeat 1 38 0 2880 207 50 73 chr6 78084302 78085210 -104330032 + L1ME2 LINE L1 5266 6152 -12 9021 27 16 2 chr6 78085425 78087264 -104327978 + L1PA3 LINE L1 4300 6155 0 288 265 70 29 chr6 78088896 78089024 -104326218 + MLT1J LTR MaLR 64 169 -281 862 213 101 19 chr6 78089107 78089314 -104325928 - MER58A DNA MER1_type 0 224 1 230 324 41 21 chr6 78089333 78089478 -104325764 + MLT1J2 LTR MaLR 284 431 -19 326 221 168 30 chr6 78089960 78090091 -104325151 - L1ME4a LINE L1 -3 6118 5970 286 261 102 23 chr6 78091909 78091997 -104323245 + MER91A DNA MER1_type 93 187 -9 2049 239 74 19 chr6 78092929 78093623 -104321619 + L1ME3A LINE L1 5440 6168 -2 274 196 0 0 chr6 78094165 78094211 -104321031 - MIR SINE MIR -8 254 209 531 287 55 0 chr6 78094383 78094547 -104320695 - MIR SINE MIR -88 174 2 2160 108 3 17 chr6 78096224 78096521 -104318721 + AluSx SINE Alu 1 293 -19 999 311 108 23 chr6 78096616 78097431 -104317811 - L2 LINE L2 -34 3279 2393 312 355 16 0 chr6 78097549 78097673 -104317569 - MIR SINE MIR -125 137 12 373 245 0 38 chr6 78098850 78098956 -104316286 - MIR SINE MIR -39 223 122 180 0 0 0 chr6 78101167 78101187 -104314055 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 364 236 57 49 chr6 78102294 78102417 -104312825 + L2 LINE L2 3189 3312 -1 6023 101 28 6 chr6 78103731 78105530 -104309712 + L1PA11 LINE L1 4355 6173 -1 763 160 15 0 chr6 78107456 78107587 -104307655 + AluJb SINE Alu 1 133 -179 254 225 54 0 chr6 78107791 78107920 -104307322 + (TA)n Simple_repeat Simple_repeat 2 137 0 235 250 164 48 chr6 78108756 78108860 -104306382 - MIR SINE MIR -66 142 27 339 319 88 22 chr6 78109011 78109193 -104306049 - L3 LINE CR1 -1300 277 84 333 0 0 0 chr6 78109664 78109701 -104305541 + (TG)n Simple_repeat Simple_repeat 2 38 0 525 211 8 16 chr6 78111563 78111691 -104303551 - LTR16B LTR ERVL -2 462 336 394 256 14 90 chr6 78111701 78111912 -104303330 - LTR16B LTR ERVL -267 197 3 605 255 34 0 chr6 78112665 78112814 -104302428 - L2 LINE L2 0 3313 3160 450 274 94 99 chr6 78114596 78115031 -104300211 - L2 LINE L2 -33 3239 2807 277 217 0 0 chr6 78116220 78116280 -104298962 - FLAM_A SINE Alu -2 131 72 240 237 17 17 chr6 78116560 78116619 -104298623 - MIR SINE MIR -63 145 87 198 171 0 0 chr6 78116752 78116793 -104298449 + (ATG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr6 78117608 78117630 -104297612 + AT_rich Low_complexity Low_complexity 1 22 0 2775 228 81 96 chr6 78119575 78120236 -104295006 - L1MC4a LINE L1 -1044 6764 6094 2404 83 0 0 chr6 78120236 78120536 -104294706 + AluY SINE Alu 1 300 -11 2775 228 81 96 chr6 78120536 78121312 -104293930 - L1MC4a LINE L1 -1714 6094 5349 566 263 72 53 chr6 78121406 78121877 -104293365 - L1MC4a LINE L1 -894 5252 4773 23 54 0 0 chr6 78121999 78122036 -104293206 + AT_rich Low_complexity Low_complexity 1 37 0 29945 102 15 59 chr6 78123086 78129510 -104285732 - L1PA7 LINE L1 -15 6139 12 540 350 157 19 chr6 78129518 78130161 -104285081 - L1M4 LINE L1 -743 5403 4672 2090 129 39 41 chr6 78130211 78130575 -104284667 + THE1B LTR MaLR 2 364 0 324 190 40 40 chr6 78130698 78130798 -104284444 - MLT1I LTR MaLR -78 546 447 2093 143 3 0 chr6 78130910 78131218 -104284024 - AluSg SINE Alu -1 309 1 298 248 113 45 chr6 78131230 78131363 -104283879 - MIR SINE MIR -66 196 55 416 250 83 25 chr6 78131435 78131555 -104283687 - L3 LINE CR1 -114 1463 1337 634 191 0 0 chr6 78131664 78131769 -104283473 - FAM SINE Alu -18 167 63 721 344 71 12 chr6 78132004 78132411 -104282831 - L3 LINE CR1 -593 984 554 311 235 0 0 chr6 78133347 78133415 -104281827 + L1MD2 LINE L1 6065 6132 -227 351 0 0 0 chr6 78133415 78133454 -104281788 + (CA)n Simple_repeat Simple_repeat 2 40 0 645 209 7 26 chr6 78133454 78133607 -104281635 + L1MD2 LINE L1 6194 6343 -16 2397 148 35 37 chr6 78134220 78134681 -104280561 + LOR1b LTR ERV1 1 460 -1 480 35 0 0 chr6 78134681 78134739 -104280503 + (TA)n Simple_repeat Simple_repeat 2 59 0 355 258 187 14 chr6 78135351 78135560 -104279682 - MLT1I LTR MaLR -99 310 66 1573 151 120 17 chr6 78135583 78135940 -104279302 + MER61C LTR ERV1 41 434 0 191 329 53 0 chr6 78136003 78136079 -104279163 + MIR SINE MIR 100 179 -83 685 254 103 9 chr6 78136091 78136315 -104278927 + MIR SINE MIR 15 259 -3 2303 85 0 32 chr6 78136817 78137133 -104278109 - AluY SINE Alu -5 306 1 585 186 18 35 chr6 78137920 78138033 -104277209 - AluJ SINE Alu -8 304 194 865 148 7 7 chr6 78138033 78138175 -104277067 - AluJ SINE Alu -168 144 3 201 239 60 120 chr6 78138419 78138536 -104276706 + MIR SINE MIR 21 130 -78 230 170 0 0 chr6 78138925 78138972 -104276270 - L1ME3A LINE L1 -5 6165 6119 2302 238 63 9 chr6 78138986 78139905 -104275337 - L1ME3A LINE L1 -210 5960 4991 1581 235 45 29 chr6 78139946 78140456 -104274786 - L1ME3A LINE L1 -1329 4817 4300 2239 97 0 0 chr6 78140548 78140848 -104274394 + AluSq SINE Alu 1 300 -13 8214 132 14 1 chr6 78141358 78142642 -104272600 + HSMAR2 DNA Mariner 1 1301 -1 984 112 0 0 chr6 78142642 78142891 -104272351 + (TA)n Simple_repeat Simple_repeat 1 249 0 542 151 104 0 chr6 78143158 78143264 -104271978 + L2 LINE L2 3197 3313 0 216 0 0 0 chr6 78145653 78145677 -104269565 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 277 361 68 23 chr6 78145677 78145801 -104269441 - L2 LINE L2 -12 3260 3128 252 0 0 0 chr6 78146995 78147023 -104268219 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 23 54 0 0 chr6 78147831 78147868 -104267374 + AT_rich Low_complexity Low_complexity 1 37 0 2437 64 0 0 chr6 78147995 78148292 -104266950 - AluY SINE Alu -14 297 1 410 180 6 55 chr6 78149286 78149469 -104265773 + (TA)n Simple_repeat Simple_repeat 2 175 0 285 208 2 36 chr6 78149487 78150067 -104265175 + (TA)n Simple_repeat Simple_repeat 1 560 0 260 207 90 117 chr6 78150933 78151078 -104264164 + MIR SINE MIR 32 172 -90 2126 117 3 32 chr6 78151130 78151473 -104263769 - MER1B DNA MER1_type -4 333 1 915 277 50 39 chr6 78152353 78152836 -104262406 + L1MEc LINE L1 1859 2346 -4050 259 204 19 0 chr6 78153324 78153378 -104261864 - MIR SINE MIR -2 260 206 23 0 0 0 chr6 78155499 78155522 -104259720 + AT_rich Low_complexity Low_complexity 1 23 0 334 282 113 32 chr6 78155558 78155682 -104259560 + MIR SINE MIR 34 167 -95 534 246 143 57 chr6 78155752 78156032 -104259210 - L2 LINE L2 -35 3278 2975 313 350 0 0 chr6 78157142 78157239 -104258003 + L2 LINE L2 3216 3312 -1 456 251 101 137 chr6 78157343 78157519 -104257723 + L3 LINE CR1 366 547 -1030 2344 87 0 13 chr6 78157519 78157831 -104257411 + AluSg SINE Alu 1 308 -2 456 251 101 137 chr6 78157831 78158288 -104256954 + L3 LINE CR1 547 976 -601 219 314 78 69 chr6 78158357 78158459 -104256783 - L2 LINE L2 -10 3262 3160 261 0 0 0 chr6 78158575 78158604 -104256638 + (A)n Simple_repeat Simple_repeat 1 29 0 202 312 122 59 chr6 78159237 78159474 -104255768 + L2 LINE L2 1155 1406 -1908 229 186 0 0 chr6 78162336 78162379 -104252863 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 803 208 56 11 chr6 78164157 78164335 -104250907 + MIR SINE MIR 65 250 -12 1666 172 7 13 chr6 78167827 78168135 -104247107 + AluSg SINE Alu 4 309 -1 349 190 40 40 chr6 78168247 78168347 -104246895 + MLT1E2 LTR MaLR 447 546 -78 2057 129 39 41 chr6 78168470 78168834 -104246408 - THE1B LTR MaLR 0 364 2 299 344 70 18 chr6 78168884 78169198 -104246044 + L1 LINE L1 4672 5015 -1131 253 86 0 0 chr6 78169782 78169840 -104245402 - Alu SINE Alu 0 306 249 337 294 131 0 chr6 78169974 78170193 -104245049 + L2 LINE L2 2768 3025 -288 2207 113 0 0 chr6 78170603 78170933 -104244309 + AluSg SINE Alu 1 310 0 267 130 0 0 chr6 78173896 78173950 -104241292 + (TA)n Simple_repeat Simple_repeat 1 54 0 460 98 0 0 chr6 78174160 78174221 -104241021 - Alu SINE Alu -255 63 3 219 285 32 89 chr6 78178022 78178180 -104237062 - MER5B DNA MER1_type -29 149 1 27 29 0 0 chr6 78180383 78180417 -104234825 + AT_rich Low_complexity Low_complexity 1 34 0 199 354 40 30 chr6 78181015 78181114 -104234128 + L2 LINE L2 3204 3303 -10 347 273 127 0 chr6 78181637 78181747 -104233495 + MIR3 SINE MIR 76 199 -9 1407 167 109 18 chr6 78182170 78182446 -104232796 + AluJb SINE Alu 1 301 -11 1903 141 63 17 chr6 78182512 78182860 -104232382 + THE1B LTR MaLR 1 364 0 1070 128 12 0 chr6 78183741 78183905 -104231337 - AluSc SINE Alu -11 298 133 327 271 165 8 chr6 78185293 78185426 -104229816 + MIR SINE MIR 65 218 -44 21 82 0 0 chr6 78186499 78186548 -104228694 + AT_rich Low_complexity Low_complexity 1 49 0 204 40 0 0 chr6 78186886 78186911 -104228331 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 351 352 0 8 chr6 78187686 78187811 -104227431 - MIR3 SINE MIR -15 193 70 217 196 20 0 chr6 78188312 78188363 -104226879 + MIR SINE MIR 147 198 -64 507 313 77 24 chr6 78188974 78189220 -104226022 - MIR SINE MIR 0 262 4 416 302 21 73 chr6 78189873 78189928 -104225314 - MER5A DNA MER1_type 0 189 133 861 55 102 8 chr6 78189928 78190055 -104225187 + MER85 DNA T2_type 1 139 0 416 302 21 73 chr6 78190055 78190191 -104225051 - MER5A DNA MER1_type -56 133 8 24 53 0 0 chr6 78192570 78192608 -104222634 + GC_rich Low_complexity Low_complexity 1 38 0 1427 112 22 4 chr6 78196567 78196799 -104218443 - L1MA3 LINE L1 0 6305 6070 1749 168 7 10 chr6 78197151 78197489 -104217753 - AluJo SINE Alu 0 312 1 195 125 0 0 chr6 78199109 78199149 -104216093 + (TG)n Simple_repeat Simple_repeat 2 41 0 207 297 80 17 chr6 78199712 78199835 -104215407 - MIR SINE MIR -63 145 16 204 284 81 0 chr6 78199896 78199970 -104215272 + MIR3 SINE MIR 119 198 -10 25 31 0 0 chr6 78200484 78200516 -104214726 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 78201028 78201050 -104214192 + AT_rich Low_complexity Low_complexity 1 22 0 2069 147 0 0 chr6 78201250 78201556 -104213686 - AluSx SINE Alu -6 306 1 1104 174 9 28 chr6 78201644 78201862 -104213380 + MER20 DNA MER1_type 6 219 0 21 36 0 0 chr6 78202032 78202060 -104213182 + AT_rich Low_complexity Low_complexity 1 28 0 1232 112 22 0 chr6 78203245 78203423 -104211819 - AluSg/x SINE Alu -14 298 117 286 301 89 24 chr6 78203856 78203979 -104211263 - L1ME LINE L1 -453 5668 5538 216 214 11 34 chr6 78204096 78204185 -104211057 + CT-rich Low_complexity Low_complexity 2 88 0 243 0 0 0 chr6 78204524 78204551 -104210691 + (TG)n Simple_repeat Simple_repeat 1 27 0 1732 153 4 11 chr6 78204598 78204879 -104210363 - AluJo SINE Alu -33 279 1 27 29 0 0 chr6 78205061 78205095 -104210147 + AT_rich Low_complexity Low_complexity 1 34 0 778 216 18 6 chr6 78205096 78205267 -104209975 - AluJb SINE Alu -20 292 120 261 263 97 69 chr6 78206021 78206310 -104208932 - L1ME LINE L1 -2002 4144 3848 273 130 19 0 chr6 78206899 78206953 -104208289 - Alu SINE Alu 0 302 248 775 139 78 8 chr6 78206953 78207082 -104208160 - AluSq/x SINE Alu -175 138 1 259 295 55 46 chr6 78207307 78207524 -104207718 - L1P LINE L1 -3160 2986 2768 506 317 75 11 chr6 78207761 78208042 -104207200 - L1ME LINE L1 -3641 2505 2207 306 315 67 67 chr6 78208484 78208811 -104206431 - HAL1b LINE L1 -673 675 349 872 208 5 5 chr6 78208843 78209035 -104206207 + L1PB1 LINE L1 6 197 -6666 * 11646 200 16 7 chr6 78209032 78212844 -104202398 + L1PB1 LINE L1 1392 5280 -1582 770 151 25 0 chr6 78212845 78212964 -104202278 - LTR12 LTR ERV1 -234 480 359 302 238 12 0 chr6 78212964 78213044 -104202198 - LTR30 LTR ERV1 -98 624 544 1653 99 99 4 chr6 78213044 78213296 -104201946 - LTR12 LTR ERV1 -437 277 2 5709 138 13 27 chr6 78213296 78214620 -104200622 + L1PB1 LINE L1 5276 6570 -297 2134 131 0 10 chr6 78214620 78214933 -104200309 - AluSx SINE Alu 0 312 3 5709 138 13 27 chr6 78214933 78215226 -104200016 + L1PB1 LINE L1 6570 6866 -1 259 270 98 37 chr6 78215670 78215834 -104199408 - L1ME LINE L1 -393 6566 6394 25 0 0 0 chr6 78216888 78216913 -104198329 + AT_rich Low_complexity Low_complexity 1 25 0 2256 96 0 7 chr6 78217759 78218062 -104197180 - AluSc SINE Alu -8 301 1 642 274 107 13 chr6 78218062 78218296 -104196946 - MIR SINE MIR -4 258 3 797 71 9 0 chr6 78219418 78219531 -104195711 + (TTTC)n Simple_repeat Simple_repeat 2 115 0 509 208 79 0 chr6 78219535 78219636 -104195606 - FLAM_A SINE Alu -28 114 6 266 305 0 0 chr6 78220116 78220175 -104195067 + MIR SINE MIR 27 85 -177 2306 206 65 13 chr6 78220384 78220927 -104194315 + L1ME3A LINE L1 5595 6165 -5 2265 116 0 0 chr6 78221309 78221619 -104193623 + AluSq SINE Alu 1 310 -3 2337 163 42 2 chr6 78221641 78222051 -104193191 - MSTB LTR MaLR 0 426 1 1609 154 16 62 chr6 78223664 78223970 -104191272 - AluJb SINE Alu -20 292 1 2297 112 0 0 chr6 78224174 78224486 -104190756 - AluSq SINE Alu -1 312 1 369 298 157 16 chr6 78224842 78225033 -104190209 - MIR SINE MIR -19 243 26 189 107 0 0 chr6 78225091 78225119 -104190123 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 57 0 0 chr6 78226075 78226110 -104189132 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr6 78226288 78226329 -104188913 + AT_rich Low_complexity Low_complexity 1 41 0 471 289 65 58 chr6 78226359 78226423 -104188819 - L1ME LINE L1 -912 6029 5967 1995 138 98 23 chr6 78226423 78226821 -104188421 + MSTA LTR MaLR 1 428 0 471 289 65 58 chr6 78226821 78227462 -104187780 - L1ME LINE L1 -974 5967 5319 749 315 41 9 chr6 78227501 78227964 -104187278 - L1ME LINE L1 -1794 5147 4670 388 353 46 35 chr6 78228201 78228569 -104186673 - L1ME LINE L1 -2542 4399 4028 1719 158 46 38 chr6 78228613 78228981 -104186261 - THE1C LTR MaLR -4 371 1 21 36 0 0 chr6 78228982 78229010 -104186232 + AT_rich Low_complexity Low_complexity 1 28 0 319 208 10 94 chr6 78229016 78229112 -104186130 + L1MC4 LINE L1 6615 6702 -1340 * 320 253 11 22 chr6 78229077 78229168 -104186074 - L1MC4 LINE L1 -1339 6703 6614 2390 90 3 0 chr6 78229169 78229468 -104185774 - AluSg SINE Alu -10 300 1 338 238 149 35 chr6 78229485 78229855 -104185387 - L1ME LINE L1 -2998 3943 3532 1378 247 147 20 chr6 78230116 78230703 -104184539 - MLT2F LTR ERVL -2 661 1 413 265 126 58 chr6 78230710 78230852 -104184390 - L1MCc LINE L1 -3739 3228 3097 1472 289 42 11 chr6 78230852 78231302 -104183940 + LTR16B LTR ERVL 1 464 0 413 265 126 58 chr6 78231302 78231461 -104183781 - L1MCc LINE L1 -3870 3097 2921 622 249 114 86 chr6 78231524 78231910 -104183332 - MLT1I LTR MaLR -9 400 4 1762 178 42 6 chr6 78232006 78232338 -104182904 - MER2 DNA MER2_type 0 344 1 948 241 4 26 chr6 78232597 78232697 -104182545 + MER58A DNA MER1_type 2 103 -2317 1866 148 45 22 chr6 78232697 78233054 -104182188 + MER47A DNA MER2_type 1 365 -1 948 241 4 26 chr6 78233054 78233181 -104182061 + MER58A DNA MER1_type 103 224 0 406 253 190 25 chr6 78234581 78234739 -104180503 + MLT1J2 LTR MaLR 267 450 0 3459 30 14 0 chr6 78234790 78235216 -104180026 + L1PA4 LINE L1 5724 6155 0 266 329 89 46 chr6 78235676 78235956 -104179286 - L2 LINE L2 0 3313 3022 286 265 34 51 chr6 78236268 78236385 -104178857 + MIR SINE MIR 98 212 -50 1249 287 103 29 chr6 78236462 78236946 -104178296 + MLT1G1 LTR MaLR 76 595 0 757 284 71 66 chr6 78237407 78238514 -104176728 - L1MCc LINE L1 -4671 2451 1129 556 274 55 41 chr6 78239047 78239339 -104175903 - L1MCc LINE L1 -6104 319 24 2239 95 0 14 chr6 78239495 78239791 -104175451 + AluY SINE Alu 1 292 -19 27 62 0 0 chr6 78240011 78240059 -104175183 + AT_rich Low_complexity Low_complexity 1 48 0 1440 172 0 8 chr6 78242755 78243023 -104172219 - L1PB4 LINE L1 -8 6148 5883 180 0 0 0 chr6 78243280 78243300 -104171942 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2037 156 0 0 chr6 78243651 78243959 -104171283 - AluSx SINE Alu -4 308 1 356 322 66 0 chr6 78244127 78244248 -104170994 - L2 LINE L2 -10 3262 3134 579 106 0 32 chr6 78245010 78245104 -104170138 + L1MA2 LINE L1 6214 6304 0 1126 257 84 50 chr6 78245550 78246127 -104169115 + L2 LINE L2 2711 3309 -4 2375 209 55 4 chr6 78246148 78246635 -104168607 + LTR53 LTR ERVL 1 512 -7 1071 222 114 3 chr6 78246868 78247074 -104168168 + LTR37A LTR ERV1 46 228 -198 423 92 0 0 chr6 78247074 78247139 -104168103 + (TA)n Simple_repeat Simple_repeat 1 65 0 1071 222 114 3 chr6 78247139 78247274 -104167968 + LTR37A LTR ERV1 228 425 -1 248 89 0 22 chr6 78248202 78248247 -104166995 + (CAA)n Simple_repeat Simple_repeat 3 46 0 194 188 0 0 chr6 78249346 78249378 -104165864 - MIR SINE MIR -91 117 86 379 286 194 18 chr6 78250276 78250493 -104164749 + L2 LINE L2 2400 2654 -660 276 77 0 0 chr6 78252768 78252807 -104162435 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1004 264 20 0 chr6 78252821 78253067 -104162175 - MIR SINE MIR 0 262 12 1004 318 114 19 chr6 78253914 78254525 -104160717 + L2 LINE L2 2400 3067 -246 397 216 27 45 chr6 78254939 78255050 -104160192 - MLT1I LTR MaLR 0 409 301 260 226 0 5 chr6 78255160 78255237 -104160005 - MLT1I LTR MaLR -260 173 98 1193 279 63 47 chr6 78255772 78256267 -104158975 + LTR33 LTR ERVL 1 503 -18 2129 121 3 0 chr6 78256512 78256810 -104158432 - AluSx SINE Alu -12 300 2 1796 197 26 21 chr6 78256823 78257030 -104158212 - MLT1B LTR MaLR -2 388 177 1550 189 176 33 chr6 78257030 78257068 -104158174 - MLT2B1 LTR ERVL 0 520 489 476 32 16 0 chr6 78257068 78257130 -104158112 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1550 189 176 33 chr6 78257130 78257546 -104157696 - MLT2B1 LTR ERVL -31 489 1 1796 197 26 21 chr6 78257546 78257724 -104157518 - MLT1B LTR MaLR -213 177 1 2019 112 10 20 chr6 78257861 78258156 -104157086 - AluSx SINE Alu -20 292 1 2249 154 9 0 chr6 78258234 78258579 -104156663 - MER7A DNA MER2_type 0 346 1 681 303 71 12 chr6 78258925 78259179 -104156063 - MLT1I LTR MaLR -140 269 1 245 226 19 0 chr6 78260063 78260116 -104155126 + L2 LINE L2 2686 2739 -575 1802 167 60 9 chr6 78260216 78260563 -104154679 + MLT1A1 LTR MaLR 1 365 0 2206 157 25 2 chr6 78260621 78261015 -104154227 + MER57A LTR ERV1 1 403 0 24 32 0 0 chr6 78261391 78261422 -104153820 + AT_rich Low_complexity Low_complexity 1 31 0 424 160 0 0 chr6 78261731 78261806 -104153436 + MER57A LTR ERV1 38 112 -291 263 296 37 80 chr6 78262466 78262628 -104152614 + MIR SINE MIR 58 212 -50 351 288 209 7 chr6 78262806 78262959 -104152283 - MIR SINE MIR -15 247 64 1640 261 70 24 chr6 78263125 78263664 -104151578 + MLT1F1 LTR MaLR 8 567 0 659 250 106 0 chr6 78264062 78264242 -104151000 - MER58C DNA MER1_type -16 199 1 880 223 11 0 chr6 78264294 78264478 -104150764 + MER105 DNA DNA 17 202 -2 195 379 0 0 chr6 78264500 78264566 -104150676 - L2 LINE L2 -2 3270 3205 538 294 88 10 chr6 78264812 78265006 -104150236 + MIR SINE MIR 34 242 -20 14484 134 16 45 chr6 78265016 78267504 -104147738 + Tigger1 DNA MER2_type 1 2417 -1 492 300 127 18 chr6 78267930 78268150 -104147092 - MIR SINE MIR -15 247 4 1232 214 28 6 chr6 78268150 78268467 -104146775 - MER33 DNA MER1_type 0 324 1 37 62 0 0 chr6 78269513 78269578 -104145664 + AT_rich Low_complexity Low_complexity 1 65 0 198 167 0 0 chr6 78269668 78269704 -104145538 + (TA)n Simple_repeat Simple_repeat 2 37 0 1828 163 22 48 chr6 78269704 78270060 -104145182 - MER7A DNA MER2_type -1 345 1 474 281 79 55 chr6 78270235 78270652 -104144590 + L1ME LINE L1 5398 5824 -297 2358 110 0 0 chr6 78270654 78270964 -104144278 + AluSg SINE Alu 1 310 0 873 161 6 37 chr6 78271187 78271348 -104143894 + FRAM SINE Alu 1 156 -20 755 302 60 7 chr6 78272077 78272378 -104142864 + MARNA DNA Mariner 254 570 -16 739 247 6 0 chr6 78272411 78272585 -104142657 + FRAM SINE Alu 1 175 -1 24 0 0 0 chr6 78273226 78273250 -104141992 + AT_rich Low_complexity Low_complexity 1 24 0 249 240 83 10 chr6 78273699 78273795 -104141447 + MLT1I LTR MaLR 299 401 -8 250 267 12 0 chr6 78274061 78274147 -104141095 + HsTC2 DNA Tc2 1 87 -1811 241 186 0 0 chr6 78274119 78274162 -104141080 + HsTC2 DNA Tc2 1854 1896 -2 * 360 77 0 0 chr6 78275764 78275816 -104139426 + (TG)n Simple_repeat Simple_repeat 1 52 0 730 240 155 10 chr6 78276201 78276401 -104138841 + MIR SINE MIR 1 229 -33 342 98 0 0 chr6 78276612 78276663 -104138579 + (CA)n Simple_repeat Simple_repeat 2 52 0 2117 120 0 3 chr6 78276665 78276949 -104138293 - AluSg SINE Alu -27 283 1 404 302 136 33 chr6 78276998 78277299 -104137943 - MLT1J1 LTR MaLR -51 395 64 207 0 0 0 chr6 78277791 78277814 -104137428 + (CAA)n Simple_repeat Simple_repeat 2 24 0 236 261 43 29 chr6 78278993 78279062 -104136180 - L2 LINE L2 -2 3311 3242 279 0 0 0 chr6 78279895 78279926 -104135316 + (CA)n Simple_repeat Simple_repeat 1 31 0 1791 173 7 0 chr6 78280327 78280627 -104134615 + AluSx SINE Alu 6 307 -5 231 167 0 0 chr6 78281027 78281069 -104134173 - L1ME LINE L1 -236 5885 5844 200 324 214 7 chr6 78283066 78283211 -104132031 - MIR3 SINE MIR -4 204 30 390 324 34 14 chr6 78283258 78283406 -104131836 - MIR SINE MIR -63 145 17 272 125 25 25 chr6 78283603 78283683 -104131559 + (TA)n Simple_repeat Simple_repeat 1 80 0 2525 209 12 14 chr6 78283683 78284176 -104131066 + MLT1F LTR MaLR 49 540 -2 1211 300 98 24 chr6 78284178 78284352 -104130890 - L2 LINE L2 -125 3188 3028 827 119 0 60 chr6 78284352 78284486 -104130756 + FLAM_C SINE Alu 1 126 -7 1211 300 98 24 chr6 78284486 78284986 -104130256 - L2 LINE L2 -285 3028 2455 27 0 0 0 chr6 78285955 78285982 -104129260 + AT_rich Low_complexity Low_complexity 1 27 0 2212 170 35 15 chr6 78286596 78286636 -104128606 - MLT2D LTR ERVL 0 414 376 273 57 0 0 chr6 78286636 78286671 -104128571 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 351 0 0 0 chr6 78286670 78286709 -104128533 + (GA)n Simple_repeat Simple_repeat 2 40 0 2212 170 35 15 chr6 78286671 78287074 -104128168 - MLT2D LTR ERVL -38 376 1 491 313 40 43 chr6 78287232 78287339 -104127903 + L1ME3A LINE L1 5101 5207 -963 2091 141 0 0 chr6 78287339 78287644 -104127598 + AluSx SINE Alu 1 305 -7 491 313 40 43 chr6 78287644 78288329 -104126913 + L1ME3A LINE L1 5207 5940 -230 195 162 0 0 chr6 78288370 78288407 -104126835 + (CTATA)n Simple_repeat Simple_repeat 5 41 0 1014 193 39 5 chr6 78288641 78288848 -104126394 + L1MC1 LINE L1 6101 6314 -19 23 33 0 0 chr6 78288916 78288946 -104126296 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 78288996 78289017 -104126225 + AT_rich Low_complexity Low_complexity 1 21 0 231 146 0 0 chr6 78289100 78289141 -104126101 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 6306 149 55 16 chr6 78289142 78290326 -104124916 - Tigger3b DNA MER2_type 0 1231 2 429 116 0 0 chr6 78290328 78290397 -104124845 + (CA)n Simple_repeat Simple_repeat 2 70 0 2201 93 0 0 chr6 78290784 78291064 -104124178 + AluSg SINE Alu 1 280 -30 361 207 92 0 chr6 78291079 78291166 -104124076 + MER5B DNA MER1_type 50 144 -34 244 265 106 33 chr6 78292583 78292828 -104122414 - HAL1b LINE L1 -1 1347 1085 667 284 66 8 chr6 78292842 78293099 -104122143 - L1ME1 LINE L1 -10 6156 5885 877 252 39 10 chr6 78293116 78293425 -104121817 - L1ME LINE L1 -3479 2601 2284 1070 261 41 28 chr6 78293466 78293853 -104121389 + L1ME LINE L1 400 791 -5279 1326 266 111 50 chr6 78293867 78295095 -104120147 - L1ME LINE L1 -4561 1519 238 234 290 41 41 chr6 78295277 78295422 -104119820 - L1MEd LINE L1 -5495 624 480 273 397 107 0 chr6 78295896 78296148 -104119094 + L2 LINE L2 2578 2856 -458 235 325 24 0 chr6 78297026 78297109 -104118133 + L3 LINE CR1 877 961 -616 192 289 52 41 chr6 78297387 78297484 -104117758 + L3 LINE CR1 1274 1371 -206 373 281 44 22 chr6 78297527 78297662 -104117580 + MLT1I LTR MaLR 68 205 -204 39 0 0 0 chr6 78297942 78297981 -104117261 + AT_rich Low_complexity Low_complexity 1 39 0 1491 176 4 47 chr6 78297998 78298276 -104116966 - AluJo SINE Alu -46 266 1 277 193 178 67 chr6 78298283 78298418 -104116824 - MER106A DNA MER1_type -84 152 3 194 354 160 7 chr6 78298428 78298572 -104116670 + L3 LINE CR1 1384 1549 -28 287 310 134 38 chr6 78298655 78298945 -104116297 + L2 LINE L2 2079 2396 -918 1104 303 172 10 chr6 78299935 78300434 -104114808 + L2 LINE L2 182 761 -2553 194 250 44 29 chr6 78300445 78300513 -104114729 + MIR SINE MIR 119 187 -75 1218 257 63 81 chr6 78303111 78303633 -104111609 - MLT1K LTR MaLR -7 581 69 1307 218 79 138 chr6 78304035 78304841 -104110401 - LTR41 LTR ERVL -6 767 9 2581 10 0 14 chr6 78304844 78305171 -104110071 + AluYb8 SINE Alu 1 323 0 339 212 141 0 chr6 78305625 78305710 -104109532 - L1ME3A LINE L1 -14 6156 6060 26 0 0 0 chr6 78306100 78306126 -104109116 + AT_rich Low_complexity Low_complexity 1 26 0 200 170 0 38 chr6 78306534 78306587 -104108655 + (TTA)n Simple_repeat Simple_repeat 3 53 0 406 314 131 0 chr6 78307890 78308065 -104107177 + MIR SINE MIR 8 205 -57 500 299 35 26 chr6 78309072 78309303 -104105939 + L1MC4 LINE L1 6761 6993 -1049 1865 78 4 0 chr6 78309409 78309654 -104105588 - L1PA10 LINE L1 -9 6159 5914 29 60 0 0 chr6 78309702 78309752 -104105490 + AT_rich Low_complexity Low_complexity 1 50 0 317 158 0 0 chr6 78311111 78311168 -104104074 - L1P LINE L1 -2509 3637 3581 5074 102 12 37 chr6 78311175 78311267 -104103975 + L1PB2 LINE L1 5352 5445 -706 563 51 26 0 chr6 78311267 78311345 -104103897 + MADE1 DNA Mariner 1 80 0 5074 102 12 37 chr6 78311345 78311509 -104103733 + L1PB2 LINE L1 5445 5611 -540 1504 105 10 0 chr6 78311509 78311718 -104103524 + AluSp SINE Alu 82 292 -21 5074 102 12 37 chr6 78311718 78312280 -104102962 + L1PB2 LINE L1 5611 6151 0 235 254 0 15 chr6 78312722 78312789 -104102453 + MER103 DNA DNA 8 73 -93 195 42 0 0 chr6 78313008 78313032 -104102210 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 281 292 35 35 chr6 78313181 78313294 -104101948 + MIR SINE MIR 150 262 0 406 228 156 24 chr6 78313860 78314027 -104101215 - MIR SINE MIR -1 261 73 720 230 48 5 chr6 78314039 78314226 -104101016 + L2 LINE L2 2438 2632 -682 908 312 118 27 chr6 78314237 78314686 -104100556 + L2 LINE L2 2823 3312 -1 239 0 32 0 chr6 78315324 78315355 -104099887 + (CAA)n Simple_repeat Simple_repeat 2 33 0 266 164 18 18 chr6 78315445 78315500 -104099742 + MLT1K LTR MaLR 532 586 -2 219 103 0 0 chr6 78315930 78315969 -104099273 + (T)n Simple_repeat Simple_repeat 1 39 0 401 261 142 17 chr6 78315972 78316148 -104099094 + MIR SINE MIR 65 262 0 248 314 12 71 chr6 78316974 78317143 -104098099 - MIR SINE MIR -50 212 54 234 0 0 0 chr6 78317619 78317645 -104097597 + (GA)n Simple_repeat Simple_repeat 1 26 0 201 74 0 0 chr6 78317923 78317950 -104097292 + (TC)n Simple_repeat Simple_repeat 2 28 0 271 268 61 132 chr6 78318418 78318828 -104096414 + MLT1-int LTR MaLR 986 1366 -5 1265 240 40 32 chr6 78318901 78319272 -104095970 - MLT1A2 LTR MaLR 0 374 1 1347 239 27 32 chr6 78319279 78319765 -104095477 + L1MEc LINE L1 2166 2609 -3606 299 324 56 21 chr6 78320000 78320142 -104095100 + MIR SINE MIR 115 261 -1 1125 76 6 6 chr6 78320379 78320537 -104094705 - L1MA6 LINE L1 -6 6294 6137 9982 179 51 7 chr6 78320537 78322024 -104093218 - L1M2c LINE L1 -1332 5876 4260 2119 125 0 0 chr6 78322024 78322321 -104092921 - AluSx SINE Alu -6 306 10 9982 179 51 7 chr6 78322321 78323019 -104092223 - L1M2c LINE L1 -2948 4260 3594 1345 184 56 61 chr6 78324670 78325214 -104090028 - L1M2c LINE L1 -3598 3610 3045 * 6626 199 45 39 chr6 78325203 78326293 -104088949 - L1PBa LINE L1 -2290 4918 3815 2113 104 3 41 chr6 78326293 78326610 -104088632 - AluSx SINE Alu -7 305 1 6626 199 45 39 chr6 78326610 78327397 -104087845 - L1PBa LINE L1 -3393 3815 3034 1832 157 67 14 chr6 78327398 78327754 -104087488 + THE1C LTR MaLR 1 375 0 9615 128 42 42 chr6 78327755 78329428 -104085814 + THE1C-int LTR MaLR 2 1734 -1 1896 140 77 8 chr6 78329429 78329780 -104085462 + THE1C LTR MaLR 1 375 0 789 132 28 14 chr6 78329780 78329924 -104085318 - L1PBa LINE L1 -4172 2691 2546 * 6071 127 22 10 chr6 78329920 78330759 -104084483 - L1PBa LINE L1 -4753 2110 1256 2040 135 7 0 chr6 78330759 78331055 -104084187 + AluSx SINE Alu 1 298 -14 6071 127 22 10 chr6 78331055 78331204 -104084038 - L1PBa LINE L1 -5607 1256 1110 362 203 14 0 chr6 78331245 78331319 -104083923 - MER74A LTR ERVL -95 463 389 3910 214 34 33 chr6 78331489 78332572 -104082670 - L1M2c LINE L1 -4291 2571 1402 1632 287 19 63 chr6 78332590 78333313 -104081929 - L1M2c LINE L1 -6571 292 -345 207 0 0 0 chr6 78333429 78333452 -104081790 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2488 75 3 0 chr6 78333731 78334039 -104081203 + AluY SINE Alu 1 309 -2 5643 256 58 44 chr6 78334491 78334607 -104080635 + L1ME1 LINE L1 20 133 -6082 7559 31 0 0 chr6 78334607 78335597 -104079645 - L1PA3 LINE L1 -3 6152 5162 5643 256 58 44 chr6 78335597 78335928 -104079314 + L1ME1 LINE L1 133 458 -5757 2490 45 0 0 chr6 78335928 78336217 -104079025 + AluY SINE Alu 1 289 -22 5643 256 58 44 chr6 78336217 78338307 -104076935 + L1ME1 LINE L1 458 2570 -3645 2907 236 66 24 chr6 78338309 78339313 -104075929 + L1ME1 LINE L1 4315 5360 -855 232 167 12 107 chr6 78339324 78339408 -104075834 + THE1C LTR MaLR 1 76 -352 * 1183 211 33 12 chr6 78339395 78339637 -104075605 + MLT1A1 LTR MaLR 119 365 0 1106 223 16 26 chr6 78339639 78339944 -104075298 + L1ME1 LINE L1 5370 5671 -564 1475 228 3 25 chr6 78339948 78340233 -104075009 + Tigger7 DNA MER2_type 1 279 -2208 1058 158 0 27 chr6 78340231 78340415 -104074827 + Tigger7 DNA MER2_type 2300 2478 -9 * 1405 236 24 54 chr6 78340433 78340674 -104074568 + L1ME1 LINE L1 5676 5922 -331 1288 101 0 45 chr6 78340674 78340873 -104074369 - MER30B DNA MER1_type 0 190 1 1405 236 24 54 chr6 78340873 78341194 -104074048 + L1ME1 LINE L1 5922 6253 0 180 308 0 31 chr6 78341516 78341581 -104073661 + MIR SINE MIR 56 118 -144 365 331 19 13 chr6 78341784 78341938 -104073304 + LTR16A1 LTR ERVL 291 445 -12 447 311 38 15 chr6 78342140 78342272 -104072970 + MIR SINE MIR 20 154 -108 203 161 65 16 chr6 78342404 78342466 -104072776 + A-rich Low_complexity Low_complexity 2 66 0 4987 157 42 10 chr6 78342885 78343224 -104072018 - L1MB1 LINE L1 0 6168 5841 2452 74 3 0 chr6 78343224 78343521 -104071721 - AluSp SINE Alu -15 298 1 253 196 0 20 chr6 78343486 78343537 -104071705 - AluSg/x SINE Alu -132 170 121 * 4987 157 42 10 chr6 78343521 78344124 -104071118 - L1MB1 LINE L1 -327 5841 5203 1855 174 10 0 chr6 78344125 78344419 -104070823 - AluSx SINE Alu -15 297 1 225 196 0 0 chr6 78344862 78344908 -104070334 + LTR66 LTR ERVL 394 439 -171 232 223 0 53 chr6 78344930 78345024 -104070218 + L1MC4 LINE L1 6615 6703 -1339 280 121 0 61 chr6 78345027 78345093 -104070149 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 257 289 0 0 chr6 78345104 78345194 -104070048 - L1MC4 LINE L1 -1339 6703 6614 228 163 0 0 chr6 78345196 78345239 -104070003 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 273 250 65 56 chr6 78346087 78346195 -104069047 - MIR SINE MIR -63 199 91 1873 153 52 8 chr6 78346438 78346823 -104068419 - L1MA9 LINE L1 -1 6311 5910 24 0 0 0 chr6 78348161 78348185 -104067057 + AT_rich Low_complexity Low_complexity 1 24 0 187 316 0 18 chr6 78348205 78348262 -104066980 + MIR SINE MIR 9 64 -198 22 56 0 0 chr6 78348754 78348790 -104066452 + AT_rich Low_complexity Low_complexity 1 36 0 511 204 44 9 chr6 78349826 78349939 -104065303 + MER94 DNA DNA 3 119 -15 263 143 0 0 chr6 78349971 78350013 -104065229 - LTR40b LTR ERVL -22 440 399 222 233 0 0 chr6 78350015 78350075 -104065167 + (TATG)n Simple_repeat Simple_repeat 1 60 0 2132 117 3 0 chr6 78350516 78350807 -104064435 - AluSx SINE Alu -20 292 1 287 342 59 20 chr6 78352182 78352334 -104062908 + MIR SINE MIR 49 206 -56 939 259 86 0 chr6 78352428 78352648 -104062594 - MIR SINE MIR -3 259 21 277 282 35 12 chr6 78353443 78353528 -104061714 - MIR SINE MIR -2 260 174 1267 252 151 21 chr6 78353542 78353978 -104061264 + MLT1J LTR MaLR 2 494 -17 526 230 194 0 chr6 78353983 78354122 -104061120 - MIR SINE MIR -83 179 14 186 43 0 0 chr6 78354271 78354294 -104060948 + (T)n Simple_repeat Simple_repeat 1 23 0 36 0 0 0 chr6 78356232 78356268 -104058974 + AT_rich Low_complexity Low_complexity 1 36 0 2152 83 0 32 chr6 78356582 78356894 -104058348 - AluSc SINE Alu -7 302 1 308 235 0 0 chr6 78358431 78358499 -104056743 + L1MC4 LINE L1 6636 6703 -1339 351 248 53 38 chr6 78358520 78358653 -104056589 - L1ME4a LINE L1 -16 6105 5971 2120 108 41 0 chr6 78358811 78359106 -104056136 - AluSx SINE Alu -5 307 1 181 358 80 22 chr6 78359299 78359436 -104055806 - MIR3 SINE MIR -6 202 58 1365 109 23 0 chr6 78360297 78360518 -104054724 - L1MA8 LINE L1 0 6291 6066 597 133 170 7 chr6 78360518 78360653 -104054589 + L1 LINE L1 4896 5052 -1094 815 271 49 0 chr6 78362578 78362781 -104052461 + MIR SINE MIR 47 259 -3 324 268 168 50 chr6 78362794 78362973 -104052269 + MIR SINE MIR 63 262 0 22 0 0 0 chr6 78364067 78364089 -104051153 + AT_rich Low_complexity Low_complexity 1 22 0 193 343 127 28 chr6 78365972 78366153 -104049089 - MIR SINE MIR -46 216 18 276 269 39 0 chr6 78366639 78366717 -104048525 - L2 LINE L2 -9 3263 3183 3280 240 31 4 chr6 78367457 78368637 -104046605 - L1MB7 LINE L1 -5 6179 4963 3924 244 92 53 chr6 78368786 78370486 -104044756 + L1MEc LINE L1 37 1803 -4593 1199 271 74 30 chr6 78370497 78370928 -104044314 - L1MEc LINE L1 -5890 506 57 206 154 0 26 chr6 78371697 78371736 -104043506 + T-rich Low_complexity Low_complexity 6 43 0 755 269 21 43 chr6 78371940 78372174 -104043068 + MIR SINE MIR 23 251 -11 21 0 0 0 chr6 78373388 78373409 -104041833 + AT_rich Low_complexity Low_complexity 1 21 0 188 264 14 28 chr6 78373955 78374027 -104041215 - L2 LINE L2 -70 3243 3173 22 0 0 0 chr6 78374043 78374065 -104041177 + AT_rich Low_complexity Low_complexity 1 22 0 204 67 0 0 chr6 78374270 78374300 -104040942 + (TG)n Simple_repeat Simple_repeat 2 31 0 588 283 134 36 chr6 78374383 78374606 -104040636 - MIR SINE MIR 0 262 18 2465 218 54 99 chr6 78375642 78376612 -104038630 - L1MEc LINE L1 -5434 962 37 459 286 56 17 chr6 78378919 78379097 -104036145 + LTR41 LTR ERVL 1 185 -588 303 215 37 47 chr6 78379580 78379687 -104035555 + LTR41 LTR ERVL 662 767 -6 366 313 86 6 chr6 78379933 78380096 -104035146 - MIR3 SINE MIR -14 194 19 1291 219 198 26 chr6 78380150 78380575 -104034667 - MLT1D LTR MaLR 0 505 8 2065 86 65 14 chr6 78380624 78380915 -104034327 - AluSg SINE Alu 0 310 5 21 36 0 0 chr6 78381538 78381566 -104033676 + AT_rich Low_complexity Low_complexity 1 28 0 225 285 146 23 chr6 78382296 78382426 -104032816 - MER113 DNA MER1_type? -110 411 266 357 336 48 0 chr6 78382744 78382869 -104032373 - L2 LINE L2 0 3313 3183 2270 92 7 3 chr6 78383230 78383522 -104031720 + AluSg SINE Alu 1 293 -17 785 158 6 0 chr6 78383669 78383827 -104031415 + CT-rich Low_complexity Low_complexity 1 159 0 331 221 77 39 chr6 78383882 78383986 -104031256 - MLT1K LTR MaLR -292 296 189 250 282 69 126 chr6 78384838 78385012 -104030230 - MIR3 SINE MIR -26 182 19 287 305 121 36 chr6 78385748 78385971 -104029271 + L2 LINE L2 2807 3048 -224 282 348 156 26 chr6 78386312 78386735 -104028507 + L2 LINE L2 1177 1654 -1660 486 300 91 28 chr6 78386918 78387205 -104028037 + L2 LINE L2 2859 3163 -150 2657 142 12 2 chr6 78388190 78388614 -104026628 - MSTA LTR MaLR 0 428 1 230 335 72 60 chr6 78388724 78389055 -104026187 + L2 LINE L2 1852 2186 -1128 2408 106 19 30 chr6 78389180 78389548 -104025694 + THE1B LTR MaLR 1 364 0 466 250 140 25 chr6 78390107 78390307 -104024935 - MIR SINE MIR -30 232 10 424 293 103 26 chr6 78390670 78390902 -104024340 - MIR SINE MIR -11 251 2 747 270 76 23 chr6 78390969 78391314 -104023928 - L1ME3A LINE L1 -4 6166 5805 494 211 147 13 chr6 78392505 78392661 -104022581 - MER5B DNA MER1_type 0 178 2 2074 103 0 14 chr6 78393289 78393609 -104021633 - AluSg1 SINE Alu 0 316 1 303 287 141 100 chr6 78393941 78394282 -104020960 - L2 LINE L2 -1 3271 2917 270 282 141 25 chr6 78395999 78396162 -104019080 + MLT1J2 LTR MaLR 37 218 -232 260 238 59 50 chr6 78396339 78396440 -104018802 + L2 LINE L2 1838 1939 -1375 263 355 181 18 chr6 78396460 78396521 -104018721 + L2 LINE L2 2226 2276 -1038 2755 96 3 5 chr6 78396521 78396897 -104018345 + THE1C LTR MaLR 1 375 0 9527 122 31 43 chr6 78396897 78398497 -104016745 + THE1C-int LTR MaLR 1 1580 0 2353 122 22 5 chr6 78398497 78398866 -104016376 + THE1C LTR MaLR 1 375 0 263 355 181 18 chr6 78398866 78399345 -104015897 + L2 LINE L2 2275 2856 -458 222 328 219 16 chr6 78399378 78399506 -104015736 + L2 LINE L2 2893 3046 -226 2234 105 0 3 chr6 78400389 78400683 -104014559 - AluSc SINE Alu -14 295 3 4737 128 35 9 chr6 78400715 78401514 -104013728 - L1MA6 LINE L1 -5 6295 5476 3333 126 49 5 chr6 78402238 78402827 -104012415 - L1MA5 LINE L1 -10 6290 5676 21512 177 24 16 chr6 78402829 78409063 -104006179 - L1 LINE L1 -1113 6452 15 2250 156 7 39 chr6 78409067 78409650 -104005592 - L1M1 LINE L1 -755 5391 4920 * 6492 166 10 1 chr6 78409649 78410817 -104004425 + L1M1 LINE L1 3728 4906 -1240 231 61 0 0 chr6 78410817 78410850 -104004392 + (CAA)n Simple_repeat Simple_repeat 2 34 0 241 299 40 90 chr6 78410880 78411081 -104004161 - MIR SINE MIR -70 192 2 262 299 183 7 chr6 78411339 78411476 -104003766 - L2 LINE L2 -1 3271 3111 264 282 56 0 chr6 78413080 78413151 -104002091 - MER5A DNA MER1_type -1 188 114 250 310 70 30 chr6 78413103 78413203 -104002039 + MER5A DNA MER1_type 36 139 -50 * 21 0 0 0 chr6 78413886 78413907 -104001335 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 78414406 78414434 -104000808 + AT_rich Low_complexity Low_complexity 1 28 0 514 231 171 16 chr6 78415877 78416128 -103999114 - L1M4 LINE L1 -1768 4378 4089 505 340 47 19 chr6 78416119 78416440 -103998802 - L1MEc LINE L1 -3353 3187 2858 * 249 47 70 0 chr6 78416438 78416481 -103998761 - L1MA7 LINE L1 0 6291 6246 * 3122 132 15 97 chr6 78416504 78416817 -103998425 - L1MA7 LINE L1 -27 6264 6034 2528 58 0 13 chr6 78416817 78417127 -103998115 - AluY SINE Alu -5 306 1 3122 132 15 97 chr6 78417127 78417486 -103997756 - L1MA7 LINE L1 -257 6034 5647 1193 189 10 0 chr6 78417487 78417688 -103997554 - MSTD LTR MaLR 0 396 194 584 220 16 4 chr6 78417690 78417948 -103997294 + GA-rich Low_complexity Low_complexity 1 261 0 360 268 0 12 chr6 78418037 78418119 -103997123 - MSTD LTR MaLR -315 81 1 4083 227 56 44 chr6 78418119 78419192 -103996050 - MSTD-int LTR MaLR -1 1734 649 799 172 16 0 chr6 78419195 78419323 -103995919 - MSTD LTR MaLR -2 394 265 4995 148 31 10 chr6 78419333 78420253 -103994989 + L1PB4 LINE L1 5217 6156 0 354 299 52 34 chr6 78420266 78420557 -103994685 - L1MEc LINE L1 -4787 1934 1639 235 288 50 31 chr6 78420595 78420817 -103994425 - L1MEc LINE L1 -4928 1510 1285 34 42 0 0 chr6 78420876 78420924 -103994318 + AT_rich Low_complexity Low_complexity 1 48 0 303 277 39 15 chr6 78421834 78421964 -103993278 - L1MEc LINE L1 -5936 594 462 * 660 222 65 18 chr6 78421961 78422240 -103993002 - L1MEc LINE L1 -5189 1351 1060 259 225 181 14 chr6 78422411 78422549 -103992693 - L1MEc LINE L1 -6123 417 257 530 265 69 29 chr6 78422577 78422822 -103992420 - L1MEc LINE L1 -6245 295 41 28 91 0 0 chr6 78423193 78423270 -103991972 + AT_rich Low_complexity Low_complexity 1 77 0 186 359 111 20 chr6 78423274 78423617 -103991625 + L2 LINE L2 1642 2015 -1299 599 343 54 67 chr6 78424043 78424565 -103990677 + L2 LINE L2 2389 2903 -411 905 135 28 7 chr6 78424754 78424895 -103990347 - U4 snRNA snRNA -1 144 1 235 303 65 13 chr6 78424901 78425056 -103990186 - L1M4 LINE L1 -1896 4250 4088 213 159 0 0 chr6 78425101 78425145 -103990097 + (CA)n Simple_repeat Simple_repeat 1 44 0 2411 182 109 40 chr6 78425152 78425673 -103989569 + MER68 LTR ERV1 6 562 0 216 182 0 0 chr6 78425685 78425729 -103989513 + (TA)n Simple_repeat Simple_repeat 2 45 0 304 308 68 0 chr6 78425766 78425883 -103989359 - L1M4 LINE L1 -2210 3936 3812 41 36 0 0 chr6 78426032 78426087 -103989155 + AT_rich Low_complexity Low_complexity 1 55 0 655 343 96 21 chr6 78426096 78426677 -103988565 + L2 LINE L2 2186 2810 -504 474 230 169 17 chr6 78428884 78429062 -103986180 - MIR SINE MIR -18 244 40 396 317 79 61 chr6 78429366 78429812 -103985430 + L2 LINE L2 2644 3117 -155 191 227 13 80 chr6 78432439 78432514 -103982728 - L2 LINE L2 -76 3237 3168 356 266 140 43 chr6 78432529 78432807 -103982435 + MARNA DNA Mariner 33 337 -249 2276 177 18 2 chr6 78432832 78433228 -103982014 + LOR1b LTR ERV1 60 461 0 264 213 0 27 chr6 78433670 78433745 -103981497 + L1MB7 LINE L1 6104 6176 -2 21 36 0 0 chr6 78433932 78433960 -103981282 + AT_rich Low_complexity Low_complexity 1 28 0 1380 232 101 43 chr6 78434907 78435211 -103980031 - MLT2B2 LTR ERVL 0 515 171 2371 98 5 69 chr6 78435211 78435600 -103979642 + THE1B LTR MaLR 1 364 0 1380 232 101 43 chr6 78435600 78435782 -103979460 - MLT2B2 LTR ERVL -344 171 1 1044 193 77 25 chr6 78435782 78436067 -103979175 + L1MB8 LINE L1 5873 6172 -6 195 114 0 0 chr6 78436563 78436598 -103978644 + (A)n Simple_repeat Simple_repeat 1 35 0 183 285 138 46 chr6 78437530 78437660 -103977582 + L2 LINE L2 3129 3270 -2 244 117 17 17 chr6 78437849 78437909 -103977333 + (TA)n Simple_repeat Simple_repeat 2 61 0 1357 279 93 28 chr6 78439152 78439684 -103975558 + L2 LINE L2 2746 3313 0 386 217 87 0 chr6 78440292 78440384 -103974858 + MER103 DNA DNA 11 110 -56 3141 170 26 2 chr6 78441164 78441746 -103973496 - L1MC3 LINE L1 -6 7779 7184 7197 155 30 14 chr6 78441754 78443003 -103972239 + Tigger1 DNA MER2_type 1 1269 -1149 4483 146 42 0 chr6 78443011 78443769 -103971473 + Tigger1 DNA MER2_type 1628 2417 -1 270 254 127 0 chr6 78443769 78443840 -103971402 - L1MC3 LINE L1 -607 7178 7099 225 0 0 0 chr6 78444173 78444198 -103971044 + (T)n Simple_repeat Simple_repeat 1 25 0 414 325 193 16 chr6 78444855 78445233 -103970009 + MLT1L LTR MaLR 132 576 -39 3158 245 70 9 chr6 78445601 78446364 -103968878 - MER21B LTR ERV1 -12 851 43 375 192 27 14 chr6 78446364 78446437 -103968805 - MER21B LTR ERV1 -771 92 19 1009 198 105 87 chr6 78447648 78448037 -103967205 + MER67D LTR ERV1 1 403 -243 23 0 0 0 chr6 78451078 78451101 -103964141 + AT_rich Low_complexity Low_complexity 1 23 0 293 380 7 27 chr6 78451397 78451547 -103963695 - MER5A DNA MER1_type 0 189 43 2281 99 3 10 chr6 78451606 78451918 -103963324 - AluSq SINE Alu -3 310 1 2200 112 0 31 chr6 78453027 78453348 -103961894 + AluSx SINE Alu 1 311 -1 1107 226 14 0 chr6 78453826 78454047 -103961195 - MER58A DNA MER1_type 0 224 1 934 185 0 0 chr6 78454298 78454444 -103960798 + FRAM SINE Alu 1 146 -30 326 282 225 7 chr6 78455209 78455351 -103959891 - L1ME LINE L1 -464 5657 5485 21 0 0 0 chr6 78455377 78455398 -103959844 + AT_rich Low_complexity Low_complexity 1 21 0 393 299 39 0 chr6 78455471 78455598 -103959644 - MIR SINE MIR -109 153 22 501 165 9 26 chr6 78456290 78456405 -103958837 - L1MA9 LINE L1 -40 6272 6160 22 35 0 0 chr6 78457206 78457235 -103958007 + AT_rich Low_complexity Low_complexity 1 29 0 33 43 0 0 chr6 78457833 78457880 -103957362 + AT_rich Low_complexity Low_complexity 1 47 0 3937 113 142 140 chr6 78458260 78459663 -103955579 + pTR5 LTR ERV1 382 2438 0 438 260 175 17 chr6 78459765 78459942 -103955300 + MIR SINE MIR 58 262 0 227 247 34 17 chr6 78459958 78460025 -103955217 - MIR SINE MIR -62 146 79 279 350 35 22 chr6 78460393 78460530 -103954712 + MIR SINE MIR 40 182 -56 2576 157 33 108 chr6 78460955 78462503 -103952739 - L1PA16 LINE L1 -13 6153 4696 2418 83 0 0 chr6 78462955 78463257 -103951985 + AluY SINE Alu 1 302 -9 849 266 98 68 chr6 78463307 78463508 -103951734 - L2 LINE L2 -10 3303 3110 248 132 0 0 chr6 78463508 78463546 -103951696 - L1 LINE L1 -1124 5022 4985 849 266 98 68 chr6 78463546 78464031 -103951211 - L2 LINE L2 -203 3110 2487 330 274 0 0 chr6 78464225 78464298 -103950944 + L2 LINE L2 2709 2781 -533 1271 247 166 57 chr6 78464302 78464982 -103950260 - L2 LINE L2 -833 2481 1728 519 280 96 34 chr6 78465466 78465705 -103949537 + MLT1L LTR MaLR 362 615 0 671 302 65 26 chr6 78465846 78466078 -103949164 - MIR SINE MIR 0 262 22 391 183 192 10 chr6 78466674 78466778 -103948464 - MIR SINE MIR -71 191 69 276 323 92 12 chr6 78466817 78466981 -103948261 + L2 LINE L2 3121 3297 -16 45 69 0 0 chr6 78466982 78467069 -103948173 + AT_rich Low_complexity Low_complexity 1 87 0 2208 93 0 27 chr6 78467152 78467501 -103947741 - AluSp SINE Alu 0 313 3 509 305 18 6 chr6 78467579 78467743 -103947499 - MER117 DNA MER1_type -18 179 14 30 0 0 0 chr6 78468731 78468761 -103946481 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 78469352 78469380 -103945862 + AT_rich Low_complexity Low_complexity 1 28 0 305 195 73 12 chr6 78469576 78469658 -103945584 - L1ME4a LINE L1 0 6121 6035 260 344 107 0 chr6 78470001 78470132 -103945110 + MLT1J LTR MaLR 6 150 -361 271 347 8 8 chr6 78470152 78470273 -103944969 + MLT1J LTR MaLR 124 244 -267 300 291 45 8 chr6 78470741 78470875 -103944367 + L1ME3 LINE L1 3427 3565 -2581 436 309 60 48 chr6 78471032 78471281 -103943961 - MLT1I LTR MaLR -123 286 35 455 292 56 40 chr6 78471358 78471680 -103943562 + L1ME3 LINE L1 3608 3934 -2212 2311 81 33 9 chr6 78471701 78472034 -103943208 - L1PA13 LINE L1 -5 6158 5818 1119 191 81 19 chr6 78472131 78472451 -103942791 - L1MC4a LINE L1 -9 7799 7460 14066 144 22 21 chr6 78472451 78474141 -103941101 + Tigger1 DNA MER2_type 2 1697 -721 1514 182 25 9 chr6 78474141 78474465 -103940777 + L1MA3 LINE L1 5975 6303 -2 14066 144 22 21 chr6 78474465 78475188 -103940054 + Tigger1 DNA MER2_type 1697 2418 0 3177 246 23 15 chr6 78475188 78476153 -103939089 - L1MC4a LINE L1 -346 7462 6533 862 229 95 53 chr6 78476161 78476498 -103938744 - MLT1D LTR MaLR -154 351 1 2066 241 74 18 chr6 78476498 78477150 -103938092 - L1MC4a LINE L1 -1787 6021 5334 533 301 112 20 chr6 78477194 78477801 -103937441 + L1ME3 LINE L1 4004 4666 -1480 603 317 78 34 chr6 78477855 78478407 -103936835 + L1ME3 LINE L1 5345 5920 -242 336 250 114 29 chr6 78479843 78479983 -103935259 + MER103 DNA DNA 9 160 -6 539 296 122 69 chr6 78480721 78481684 -103933558 + L2 LINE L2 2318 3310 -3 588 321 102 5 chr6 78481778 78481993 -103933249 - MIR SINE MIR -14 248 13 1575 227 34 57 chr6 78482687 78482837 -103932405 + MLT1D LTR MaLR 23 175 -330 2522 71 0 3 chr6 78482837 78483148 -103932094 - AluY SINE Alu -1 310 1 1575 227 34 57 chr6 78483148 78483385 -103931857 + MLT1D LTR MaLR 175 416 -89 2432 45 14 7 chr6 78483385 78483676 -103931566 - AluY SINE Alu -18 293 1 1575 227 34 57 chr6 78483676 78483713 -103931529 + MLT1D LTR MaLR 416 452 -53 2101 101 10 23 chr6 78483713 78484019 -103931223 - AluSc SINE Alu -7 302 1 1575 227 34 57 chr6 78484019 78484086 -103931156 + MLT1D LTR MaLR 452 505 0 310 235 82 0 chr6 78484791 78484876 -103930366 - MLT1I LTR MaLR 0 409 318 259 270 95 0 chr6 78485655 78485718 -103929524 + Charlie1 DNA MER1_type 7 75 -2686 * 2590 169 17 72 chr6 78485714 78486354 -103928888 + Charlie1 DNA MER1_type 2145 2749 -12 671 183 11 147 chr6 78486445 78486636 -103928606 - AluJb SINE Alu -11 301 137 424 275 62 46 chr6 78486968 78487208 -103928034 + MLT1J LTR MaLR 233 476 -35 2084 182 46 33 chr6 78487281 78487736 -103927506 - MLT1C LTR MaLR -6 461 1 210 270 135 14 chr6 78487737 78487811 -103927431 - MIR SINE MIR -110 98 16 283 313 15 0 chr6 78487879 78487946 -103927296 + MER5A DNA MER1_type 57 124 -65 1932 262 38 14 chr6 78487963 78488547 -103926695 - L1ME1 LINE L1 -23 6143 5546 1925 112 4 0 chr6 78490162 78490421 -103924821 - AluSx SINE Alu -18 294 35 267 264 55 22 chr6 78490471 78490562 -103924680 + MIR SINE MIR 97 190 -72 402 234 133 25 chr6 78491379 78491537 -103923705 - MER104 DNA Tc2 -5 175 1 1078 165 42 0 chr6 78491595 78491637 -103923605 + L1MC3 LINE L1 6917 6956 -829 494 91 39 0 chr6 78491637 78491714 -103923528 + MADE1 DNA Mariner 1 80 0 1078 165 42 0 chr6 78491714 78491883 -103923359 + L1MC3 LINE L1 6956 7137 -648 1187 165 73 36 chr6 78491891 78492139 -103923103 - AluSx SINE Alu -15 297 41 3412 154 39 35 chr6 78492140 78492789 -103922453 + L1MC3 LINE L1 7133 7783 -2 1050 142 82 8 chr6 78493128 78493440 -103921802 - MLT1B LTR MaLR -7 383 1 785 214 11 11 chr6 78494564 78494751 -103920491 + MER53 DNA DNA 1 187 -2 1104 219 53 98 chr6 78495325 78495818 -103919424 - MER39 LTR ERV1 0 685 233 1075 88 0 0 chr6 78496444 78496592 -103918650 + L1PA14 LINE L1 6012 6159 -2 917 207 37 0 chr6 78497925 78498113 -103917129 + MER20 DNA MER1_type 24 218 -1 1914 207 0 19 chr6 78498675 78499047 -103916195 - MLT1A1 LTR MaLR 0 365 1 211 393 93 0 chr6 78500016 78500123 -103915119 - MIR SINE MIR -65 143 27 1907 145 7 16 chr6 78501086 78501389 -103913853 - AluSq SINE Alu -13 300 1 275 343 107 43 chr6 78502840 78502980 -103912262 + L2 LINE L2 3121 3269 -3 183 254 115 25 chr6 78504622 78504744 -103910498 - MIR SINE MIR -56 206 74 2376 101 0 0 chr6 78504766 78505074 -103910168 + AluSq SINE Alu 1 308 -5 246 311 203 11 chr6 78505116 78505293 -103909949 - MIR SINE MIR -50 212 2 218 279 29 0 chr6 78505459 78505527 -103909715 + MIR SINE MIR 175 244 -18 1268 133 22 5 chr6 78505983 78506219 -103909023 + L1PA8 LINE L1 5895 6159 -4 355 204 126 0 chr6 78508369 78508472 -103906770 - LTR50 LTR ERVL -2 793 678 1982 290 44 35 chr6 78508542 78509195 -103906047 + HERV16 LTR ERVL 1573 2238 -2758 2133 106 0 0 chr6 78509195 78509469 -103905773 - AluSq SINE Alu -8 305 32 1982 290 44 35 chr6 78509469 78509733 -103905509 + HERV16 LTR ERVL 2238 2498 -2498 700 342 37 33 chr6 78509785 78510270 -103904972 + HERV16 LTR ERVL 2914 3400 -2254 524 298 42 25 chr6 78510454 78510535 -103904707 + HERV16 LTR ERVL 4084 4162 -1492 1478 191 21 80 chr6 78510535 78510923 -103904319 + MLT1A1 LTR MaLR 1 365 0 524 298 42 25 chr6 78510923 78511079 -103904163 + HERV16 LTR ERVL 4162 4325 -1329 674 255 0 53 chr6 78511446 78511634 -103903608 + MER5B DNA MER1_type 1 178 0 258 133 25 36 chr6 78511850 78511938 -103903304 - L1MC/D LINE L1 -679 5442 5374 1894 180 10 35 chr6 78512289 78512689 -103902553 - MLT1B LTR MaLR 0 390 1 366 23 0 0 chr6 78512827 78512870 -103902372 + (TG)n Simple_repeat Simple_repeat 2 44 0 442 289 120 67 chr6 78514305 78514662 -103900580 - L1M2 LINE L1 -5779 1070 695 318 230 92 0 chr6 78514916 78515003 -103900239 - MER5B DNA MER1_type -34 144 50 2149 100 0 0 chr6 78515018 78515298 -103899944 - AluSg SINE Alu -30 280 1 321 140 0 0 chr6 78515685 78515742 -103899500 + (TG)n Simple_repeat Simple_repeat 2 58 0 6198 148 55 17 chr6 78515744 78516929 -103898313 + Tigger3b DNA MER2_type 2 1231 0 231 146 0 0 chr6 78516930 78516971 -103898271 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr6 78517054 78517075 -103898167 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 78517125 78517155 -103898087 + AT_rich Low_complexity Low_complexity 1 30 0 1016 179 43 10 chr6 78517224 78517431 -103897811 - L1MC1 LINE L1 -19 6314 6101 195 162 0 0 chr6 78517665 78517702 -103897540 + (TATAG)n Simple_repeat Simple_repeat 5 41 0 398 333 40 27 chr6 78517743 78518372 -103896870 - L1ME3A LINE L1 -230 5940 5261 2117 141 0 0 chr6 78518428 78518733 -103896509 - AluSx SINE Alu -7 305 1 22 0 0 0 chr6 78518776 78518798 -103896444 + AT_rich Low_complexity Low_complexity 1 22 0 331 158 0 24 chr6 78518874 78518956 -103896286 + CT-rich Low_complexity Low_complexity 2 81 0 705 273 122 6 chr6 78518982 78519293 -103895949 - L1MEc LINE L1 -6013 383 37 405 286 56 17 chr6 78521601 78521779 -103893463 + LTR41 LTR ERVL 1 185 -588 21 0 0 0 chr6 78522692 78522713 -103892529 + AT_rich Low_complexity Low_complexity 1 21 0 436 252 71 22 chr6 78523123 78523349 -103891893 - MER97c DNA MER1_type? -43 1047 811 23 0 0 0 chr6 78523532 78523555 -103891687 + AT_rich Low_complexity Low_complexity 1 23 0 954 237 64 67 chr6 78523733 78524184 -103891058 - MER97c DNA MER1_type? -490 600 151 1898 245 26 10 chr6 78524255 78524745 -103890497 + LTR40a LTR ERVL 1 498 -21 194 133 0 0 chr6 78525921 78525951 -103889291 - L2 LINE L2 -17 3296 3267 21 57 0 0 chr6 78526082 78526117 -103889125 + AT_rich Low_complexity Low_complexity 1 35 0 290 342 35 26 chr6 78527196 78527310 -103887932 + L2 LINE L2 3147 3261 -11 426 289 134 58 chr6 78527375 78527549 -103887693 + L1ME LINE L1 4422 4581 -1565 186 43 0 0 chr6 78527549 78527572 -103887670 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 426 289 134 58 chr6 78527572 78528057 -103887185 + L1ME LINE L1 4581 5138 -1008 284 235 179 0 chr6 78528235 78528399 -103886843 + MLT1J2 LTR MaLR 3 166 -284 345 62 0 0 chr6 78528827 78528875 -103886367 + (TA)n Simple_repeat Simple_repeat 1 48 0 235 307 79 0 chr6 78528891 78529031 -103886211 + L1ME LINE L1 5609 5759 -362 22 0 0 0 chr6 78529098 78529120 -103886122 + AT_rich Low_complexity Low_complexity 1 22 0 2618 86 24 22 chr6 78529123 78529532 -103885710 - LTR7 LTR ERV1 -40 410 1 2298 85 50 13 chr6 78529532 78529908 -103885334 - HERVH LTR ERV1 0 7713 7324 1348 108 5 0 chr6 78529908 78530112 -103885130 - HERVH LTR ERV1 -1894 5819 5615 2824 124 18 1 chr6 78530157 78530760 -103884482 - HERVH LTR ERV1 -2564 5149 4488 7797 106 3 10 chr6 78530763 78532820 -103882422 - HERVH LTR ERV1 -3721 3992 1783 387 304 19 19 chr6 78533217 78533485 -103881757 + CT-rich Low_complexity Low_complexity 1 268 0 1532 116 8 0 chr6 78533547 78533797 -103881445 - HERVH LTR ERV1 -7461 252 1 702 67 0 19 chr6 78533800 78533904 -103881338 - LTR7 LTR ERV1 -2 448 347 1631 263 91 31 chr6 78534440 78534726 -103880516 - L1ME3A LINE L1 -7 6232 5965 2228 93 3 3 chr6 78534726 78535026 -103880216 - AluSc SINE Alu -9 300 1 1631 263 91 31 chr6 78535026 78535424 -103879818 - L1ME3A LINE L1 -274 5965 5507 306 213 0 0 chr6 78535412 78535492 -103879750 - L1ME3A LINE L1 -1587 4628 4549 * 762 269 9 77 chr6 78535630 78535980 -103879262 - L1ME3A LINE L1 -6033 363 38 364 241 9 45 chr6 78537178 78537290 -103877952 + MIR SINE MIR 40 147 -61 2231 213 73 75 chr6 78537305 78538231 -103877011 + MER63C DNA MER1_type 1 925 -5 2706 236 55 50 chr6 78540413 78541072 -103874170 + MER97c DNA MER1_type? 14 668 -422 2138 136 0 0 chr6 78541072 78541381 -103873861 + AluSx SINE Alu 1 309 -3 2706 236 55 50 chr6 78541381 78541593 -103873649 + MER97c DNA MER1_type? 668 893 -197 2162 118 0 13 chr6 78541593 78541897 -103873345 + AluSx SINE Alu 1 300 -12 2706 236 55 50 chr6 78541897 78542017 -103873225 + MER97c DNA MER1_type? 893 1011 -79 1211 239 128 0 chr6 78543420 78543771 -103871471 - MSTD LTR MaLR 0 396 1 215 358 0 0 chr6 78544641 78544708 -103870534 + L2 LINE L2 3002 3068 -204 292 272 11 65 chr6 78545855 78545947 -103869295 + MIR3 SINE MIR 101 187 -21 190 371 36 36 chr6 78547242 78547382 -103867860 + L2 LINE L2 2917 3056 -216 2571 289 136 36 chr6 78549128 78550405 -103864837 - HAL1 LINE L1 -7 2500 1352 456 295 79 82 chr6 78550405 78550809 -103864433 + MLT1I LTR MaLR 4 406 -3 2571 289 136 36 chr6 78550809 78551746 -103863496 - HAL1 LINE L1 -1155 1352 65 201 351 119 40 chr6 78552040 78552291 -103862951 - L2 LINE L2 -480 2834 2564 277 308 164 34 chr6 78552684 78552892 -103862350 - L2 LINE L2 -778 2536 2302 2261 108 3 0 chr6 78552922 78553228 -103862014 - AluSx SINE Alu -5 307 1 291 291 89 19 chr6 78553295 78553453 -103861789 - L2 LINE L2 -1352 1962 1794 4398 259 59 15 chr6 78554765 78557201 -103858041 - L1ME1 LINE L1 -173 6062 3483 * 5836 269 58 18 chr6 78557198 78559627 -103855615 - L1ME1 LINE L1 -3679 2536 36 306 0 0 0 chr6 78560411 78560445 -103854797 + (T)n Simple_repeat Simple_repeat 1 34 0 1804 155 0 4 chr6 78560767 78561045 -103854197 + AluJb SINE Alu 11 287 -25 21 36 0 0 chr6 78561045 78561073 -103854169 + AT_rich Low_complexity Low_complexity 1 28 0 1773 182 7 0 chr6 78561212 78561498 -103853744 + AluJb SINE Alu 12 299 -13 249 108 0 0 chr6 78561898 78561935 -103853307 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 413 125 38 0 chr6 78561935 78562015 -103853227 - L1MB3 LINE L1 -7 6176 6094 3823 179 14 4 chr6 78562022 78562739 -103852503 - L1MA4 LINE L1 -279 6021 5298 1041 163 33 0 chr6 78562747 78562931 -103852311 - L1PA16 LINE L1 -9 6157 5968 2005 144 123 11 chr6 78562938 78563319 -103851923 - MSTA LTR MaLR 0 428 5 2756 178 37 2 chr6 78563328 78563810 -103851432 - MSTA-int LTR MaLR -6 1645 1147 * 4041 194 33 3 chr6 78563788 78564547 -103850695 - MSTA-int LTR MaLR -869 782 1 794 161 140 0 chr6 78564547 78564690 -103850552 - MSTA LTR MaLR 0 428 266 1927 205 7 81 chr6 78564699 78564810 -103850432 + L1M3f LINE L1 2 120 -5208 2194 124 0 0 chr6 78564810 78565101 -103850141 - AluY SINE Alu -20 291 1 1927 205 7 81 chr6 78565101 78565447 -103849795 + L1M3f LINE L1 120 425 -4903 4602 92 44 35 chr6 78565452 78566302 -103848940 + pTR5 LTR ERV1 270 2468 0 * 21267 98 33 7 chr6 78566302 78569285 -103845957 + HERV9 LTR ERV1 80 3139 -5260 6470 80 10 11 chr6 78569298 78570194 -103845048 + HERV9 LTR ERV1 4086 4980 -3419 2127 184 94 58 chr6 78570161 78571166 -103844076 + Harlequin LTR ERV1 840 1740 -5156 * 5648 99 4 0 chr6 78571164 78571931 -103843311 + Harlequin LTR ERV1 7626 8395 -4 4891 84 52 0 chr6 78571935 78572589 -103842653 + LTR12 LTR ERV1 1 688 0 821 217 86 77 chr6 78572589 78573068 -103842174 + L1M3f LINE L1 433 951 -4377 223 278 14 14 chr6 78573275 78573347 -103841895 + MIR3 SINE MIR 122 193 -15 3167 121 2 32 chr6 78573837 78574340 -103840902 - LTR22B LTR ERVK -4 488 1 1156 113 109 13 chr6 78576782 78577012 -103838230 - L1MA6 LINE L1 0 6300 6049 429 246 139 0 chr6 78577268 78577390 -103837852 + L2 LINE L2 3171 3309 -4 26 64 0 0 chr6 78577654 78577701 -103837541 + AT_rich Low_complexity Low_complexity 1 47 0 251 0 59 0 chr6 78577720 78577754 -103837488 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 5730 166 21 8 chr6 78577754 78579452 -103835790 - L1PB1 LINE L1 -10 6857 5136 310 333 0 0 chr6 78579569 78579659 -103835583 - L1MC4 LINE L1 -1339 6703 6614 9736 177 34 19 chr6 78579669 78583454 -103831788 - L1PB1 LINE L1 -1753 5109 1092 3303 238 82 7 chr6 78583457 78584424 -103830818 - L1PB1 LINE L1 -5819 1044 6 2385 118 28 3 chr6 78584981 78585336 -103829906 + THE1B LTR MaLR 1 364 0 611 330 21 21 chr6 78585354 78585590 -103829652 + MIR SINE MIR 6 241 -21 481 258 16 0 chr6 78585670 78585798 -103829444 - MER94 DNA DNA -4 130 1 371 237 15 53 chr6 78587210 78587341 -103827901 + MIR SINE MIR 67 192 -70 2025 134 69 29 chr6 78588441 78588791 -103826451 - THE1B LTR MaLR 0 364 1 362 370 70 26 chr6 78588859 78589089 -103826153 + L1MEd LINE L1 267 506 -5613 2720 244 35 6 chr6 78589189 78589882 -103825360 + L1M2c LINE L1 1271 1983 -4806 5716 33 4 4 chr6 78589882 78590579 -103824663 - L1PA4 LINE L1 0 6155 5459 2086 20 109 0 chr6 78590579 78590910 -103824332 + L1PA4 LINE L1 5109 5466 -689 * 10242 238 50 15 chr6 78590908 78591711 -103823531 + L1PA16 LINE L1 2402 3175 -4390 1997 131 0 3 chr6 78591711 78592022 -103823220 + AluY SINE Alu 1 310 0 10242 238 50 15 chr6 78592022 78594380 -103820862 + L1PA16 LINE L1 3175 5741 -1824 207 0 0 0 chr6 78594380 78594403 -103820839 + (CA)n Simple_repeat Simple_repeat 1 23 0 10242 238 50 15 chr6 78594403 78595168 -103820074 + L1PA16 LINE L1 5741 6478 -1087 24 0 0 0 chr6 78595168 78595192 -103820050 + AT_rich Low_complexity Low_complexity 1 24 0 400 265 63 12 chr6 78595195 78595448 -103819794 + L1M2c LINE L1 3578 3843 -2945 579 288 50 67 chr6 78595450 78595946 -103819296 + L1ME3A LINE L1 5476 5963 -207 12059 48 3 0 chr6 78596177 78598439 -103816803 - L1PA5 LINE L1 -3 6151 3885 24 0 0 0 chr6 78598479 78598503 -103816739 + AT_rich Low_complexity Low_complexity 1 24 0 417 326 69 85 chr6 78598744 78599180 -103816062 + L2 LINE L2 2544 2972 -342 279 199 0 30 chr6 78599245 78599346 -103815896 + L1P4 LINE L1 5350 5443 -722 4663 144 32 1 chr6 78599349 78600248 -103814994 + L1PA16 LINE L1 6524 7447 -138 188 343 48 41 chr6 78600595 78600741 -103814501 + L2 LINE L2 2914 3060 -212 1972 164 19 24 chr6 78601107 78601480 -103813762 - THE1C LTR MaLR 0 375 5 21 0 0 0 chr6 78602019 78602040 -103813202 + AT_rich Low_complexity Low_complexity 1 21 0 995 179 144 47 chr6 78602040 78602359 -103812883 - MER106B DNA MER1_type -20 1039 690 1474 348 9 26 chr6 78602957 78603606 -103811636 - ERVL LTR ERVL -1067 4697 4060 258 316 13 0 chr6 78603912 78603991 -103811251 - MER116 DNA Mariner 0 80 1 27 29 0 0 chr6 78603991 78604025 -103811217 + AT_rich Low_complexity Low_complexity 1 34 0 341 287 161 11 chr6 78604034 78604320 -103810922 + L1M4 LINE L1 2813 3141 -3005 182 192 19 0 chr6 78604395 78604447 -103810795 + (TA)n Simple_repeat Simple_repeat 1 53 0 2256 92 0 7 chr6 78604589 78604884 -103810358 + AluY SINE Alu 1 293 -18 3030 272 105 14 chr6 78604884 78606423 -103808819 - L1MCc LINE L1 -1822 5119 3441 2213 98 3 7 chr6 78606425 78606721 -103808521 + AluY SINE Alu 3 297 -14 217 116 47 0 chr6 78606724 78606767 -103808475 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 22 35 0 0 chr6 78606784 78606813 -103808429 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chr6 78606906 78606942 -103808300 + AT_rich Low_complexity Low_complexity 1 36 0 42266 39 23 1 chr6 78606953 78612972 -103802270 - L1PA3 LINE L1 0 6155 2 2241 280 59 28 chr6 78613020 78615358 -103799884 - L1MCc LINE L1 -3516 3425 823 1160 156 88 105 chr6 78615358 78615653 -103799589 - AluJb SINE Alu -12 290 1 2241 280 59 28 chr6 78615653 78615670 -103799572 - L1MCc LINE L1 -6118 823 808 696 311 239 28 chr6 78616515 78617194 -103798048 + L3 LINE CR1 30 851 -726 891 202 25 10 chr6 78617521 78617719 -103797523 + MER58 DNA MER1_type 1 201 -140 382 309 137 23 chr6 78618005 78618261 -103796981 + L2 LINE L2 3028 3312 -1 245 160 0 0 chr6 78619576 78619626 -103795616 + L1MC4 LINE L1 6652 6701 -1341 231 274 27 0 chr6 78619627 78619700 -103795542 + (TA)n Simple_repeat Simple_repeat 2 76 0 4691 162 22 12 chr6 78619843 78620699 -103794543 - L1MB4 LINE L1 -1 6179 5315 9778 223 38 20 chr6 78620702 78624583 -103790659 - L1MC1 LINE L1 -5 6608 2655 2978 178 29 78 chr6 78624595 78625316 -103789926 - L1MC1 LINE L1 -5740 686 1 951 232 68 0 chr6 78627298 78627505 -103787737 + MER58A DNA MER1_type 4 224 0 196 346 26 39 chr6 78627941 78628019 -103787223 + L2 LINE L2 1132 1208 -2106 370 350 63 60 chr6 78628493 78628793 -103786449 + L2 LINE L2 2971 3271 -1 28 48 0 0 chr6 78629412 78629454 -103785788 + AT_rich Low_complexity Low_complexity 1 42 0 1042 145 41 72 chr6 78630024 78630245 -103784997 + MER20 DNA MER1_type 2 215 -4 262 214 60 12 chr6 78630375 78630459 -103784783 - L1ME4a LINE L1 -43 6078 5991 376 279 62 14 chr6 78631231 78631439 -103783803 - L1ME4a LINE L1 -197 5924 5707 1310 186 42 108 chr6 78631533 78631914 -103783328 - L1MB8 LINE L1 -4 6174 5819 1211 145 24 63 chr6 78631987 78632242 -103783000 - L1PA15 LINE L1 0 6165 5921 1513 224 153 20 chr6 78632824 78633270 -103781972 + MLT1D LTR MaLR 1 505 0 414 318 46 20 chr6 78633616 78633767 -103781475 + MIR SINE MIR 37 191 -71 653 293 71 40 chr6 78634554 78634878 -103780364 + L2 LINE L2 2980 3313 0 374 265 130 81 chr6 78635696 78636126 -103779116 - MLT1J LTR MaLR -35 476 26 2308 71 0 7 chr6 78636443 78636738 -103778504 + AluY SINE Alu 1 293 -18 3333 266 101 12 chr6 78636738 78638280 -103776962 - L1M4 LINE L1 -1822 4324 2646 2213 98 3 7 chr6 78638282 78638578 -103776664 + AluY SINE Alu 3 297 -14 217 116 47 0 chr6 78638581 78638624 -103776618 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 22 35 0 0 chr6 78638641 78638670 -103776572 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chr6 78638763 78638799 -103776443 + AT_rich Low_complexity Low_complexity 1 36 0 33971 33 2 0 chr6 78638810 78643709 -103771533 - L1PA3 LINE L1 0 6155 1246 547 226 23 15 chr6 78643936 78644069 -103771173 - MER94 DNA DNA 0 134 1 366 23 0 0 chr6 78644709 78644752 -103770490 + (TATG)n Simple_repeat Simple_repeat 2 44 0 700 158 9 0 chr6 78644753 78644867 -103770375 - FLAM_C SINE Alu -17 116 2 30 27 0 0 chr6 78645117 78645154 -103770088 + AT_rich Low_complexity Low_complexity 1 37 0 311 361 46 8 chr6 78645365 78645495 -103769747 + MIR SINE MIR 17 151 -57 203 257 99 20 chr6 78645536 78645637 -103769605 - MIR SINE MIR -10 252 144 320 308 153 40 chr6 78645679 78646105 -103769137 + L2 LINE L2 423 896 -2418 1671 233 22 0 chr6 78646566 78646923 -103768319 - MLT1A1 LTR MaLR 0 365 1 382 299 71 15 chr6 78647430 78647608 -103767634 + MIR SINE MIR 3 194 -14 3284 224 41 41 chr6 78647830 78648610 -103766632 + L1MD2 LINE L1 5394 6177 -182 1986 132 4 0 chr6 78648610 78648935 -103766307 + AluSx SINE Alu 1 326 0 3284 224 41 41 chr6 78648935 78649109 -103766133 + L1MD2 LINE L1 6176 6349 -10 558 290 80 42 chr6 78649880 78650142 -103765100 + LTR16A LTR ERVL 179 450 0 1675 337 20 20 chr6 78650147 78650522 -103764720 + HERV16 LTR ERVL 6 383 -4613 909 192 73 127 chr6 78650522 78650917 -103764325 + MLT1A2 LTR MaLR 1 374 0 1675 337 20 20 chr6 78650917 78651200 -103764042 + HERV16 LTR ERVL 382 664 -4332 1912 322 23 17 chr6 78651242 78651947 -103763295 + HERV16 LTR ERVL 742 1450 -3546 688 299 23 37 chr6 78652046 78652263 -103762979 + LTR16A LTR ERVL 235 448 -2 1213 161 86 105 chr6 78652447 78652733 -103762509 - MLT1A1 LTR MaLR 0 365 86 2827 13 0 0 chr6 78652733 78653040 -103762202 - AluY SINE Alu -3 308 2 1213 161 86 105 chr6 78653040 78653125 -103762117 - MLT1A1 LTR MaLR -279 86 1 265 323 147 22 chr6 78653259 78653578 -103761664 + L2 LINE L2 2001 2359 -955 256 327 168 0 chr6 78653690 78653803 -103761439 - L2 LINE L2 0 3272 3141 746 202 156 0 chr6 78654018 78654191 -103761051 + MER3 DNA MER1_type 4 203 -6 425 239 0 0 chr6 78654155 78654243 -103760999 - MER3 DNA MER1_type -120 89 2 * 222 336 74 8 chr6 78654290 78654412 -103760830 - L2 LINE L2 -497 2817 2688 1548 189 25 4 chr6 78654906 78655187 -103760055 - AluJo SINE Alu -25 287 1 4055 235 113 64 chr6 78656309 78658691 -103756551 + L1MC3 LINE L1 5 2536 -3890 4404 177 11 20 chr6 78658721 78659619 -103755623 + L1MA8 LINE L1 4380 5269 -877 1179 137 155 0 chr6 78659619 78659907 -103755335 + MER7A DNA MER2_type 1 336 0 3724 164 25 6 chr6 78659907 78660601 -103754641 + L1MA8 LINE L1 5269 5975 -325 1536 211 22 28 chr6 78660601 78660962 -103754280 - THE1C LTR MaLR 0 375 17 1202 199 6 52 chr6 78660964 78661297 -103753945 + L1MA8 LINE L1 5981 6287 -4 5691 259 53 38 chr6 78661321 78663683 -103751559 + L1MC3 LINE L1 2569 4967 -1459 4843 54 11 2 chr6 78663695 78664375 -103750867 - L1PA6 LINE L1 -281 5873 5189 373 89 0 0 chr6 78664375 78664430 -103750812 + L1PA6 LINE L1 6098 6153 -1 4689 203 68 39 chr6 78664447 78666229 -103749013 + L1MC3 LINE L1 4976 5655 -771 968 130 48 43 chr6 78666251 78666458 -103748784 - MLT1A2 LTR MaLR -162 212 5 975 124 10 67 chr6 78666462 78666619 -103748623 + L1MC3 LINE L1 7248 7394 -671 2202 89 0 49 chr6 78666619 78666945 -103748297 + AluY SINE Alu 1 310 -1 975 124 10 67 chr6 78666945 78666980 -103748262 + L1MC3 LINE L1 7394 7429 -636 2590 228 44 77 chr6 78667091 78667484 -103747758 - L1M3f LINE L1 -4498 830 426 4866 86 52 0 chr6 78667484 78668138 -103747104 - LTR12 LTR ERV1 0 688 1 2590 228 44 77 chr6 78668138 78668489 -103746753 - L1M3f LINE L1 -4902 426 115 2194 124 0 0 chr6 78668489 78668780 -103746462 + AluY SINE Alu 1 291 -20 2590 228 44 77 chr6 78668780 78668891 -103746351 - L1M3f LINE L1 -5213 115 2 794 161 140 0 chr6 78668900 78669043 -103746199 + MSTA LTR MaLR 266 428 0 4041 194 33 3 chr6 78669043 78669802 -103745440 + THE1C-int LTR MaLR 1 782 -869 2743 183 37 0 chr6 78669780 78670261 -103744981 + THE1C-int LTR MaLR 1147 1645 -6 * 3227 262 34 12 chr6 78670373 78671047 -103744195 - L1MCa LINE L1 -2697 3729 3018 2807 6 0 10 chr6 78671047 78671358 -103743884 - AluY SINE Alu -3 308 1 3227 262 34 12 chr6 78671358 78671819 -103743423 - L1MCa LINE L1 -3408 3018 2569 1202 196 8 56 chr6 78671843 78672176 -103743066 - L1MA8 LINE L1 0 6168 5981 1562 207 31 25 chr6 78672178 78672535 -103742707 + THE1C LTR MaLR 17 375 0 3752 161 25 6 chr6 78672535 78673229 -103742013 - L1MA8 LINE L1 -325 5975 5269 1179 137 155 0 chr6 78673229 78673517 -103741725 - MER7A DNA MER2_type 0 337 1 4410 177 11 19 chr6 78673517 78674414 -103740828 - L1MA8 LINE L1 -877 5269 4380 4113 234 113 67 chr6 78674444 78676835 -103738407 - L1MCa LINE L1 -3890 2536 5 1548 189 25 4 chr6 78677957 78678238 -103737004 + AluJo SINE Alu 1 287 -25 222 336 74 8 chr6 78678732 78678854 -103736388 + L2 LINE L2 2688 2817 -497 425 239 0 0 chr6 78678901 78678989 -103736253 + MER3 DNA MER1_type 2 89 -120 * 733 208 156 0 chr6 78678953 78679126 -103736116 - MER3 DNA MER1_type -6 203 4 256 327 168 0 chr6 78679341 78679454 -103735788 + L2 LINE L2 3141 3272 0 278 332 144 19 chr6 78679566 78679885 -103735357 - L2 LINE L2 -955 2359 2001 1181 201 139 36 chr6 78680020 78680379 -103734863 + MSTD LTR MaLR 1 396 0 706 295 23 37 chr6 78680563 78680780 -103734462 - LTR16A LTR ERVL -2 448 235 1941 319 23 17 chr6 78680879 78681584 -103733658 - HERV16 LTR ERVL -3546 1450 742 1675 337 20 20 chr6 78681626 78681909 -103733333 - HERV16 LTR ERVL -4332 664 382 909 192 73 127 chr6 78681909 78682304 -103732938 - MLT1A2 LTR MaLR 0 374 1 1675 337 20 20 chr6 78682304 78682679 -103732563 - HERV16 LTR ERVL -4613 383 6 558 290 80 42 chr6 78682684 78682946 -103732296 - LTR16A LTR ERVL 0 450 179 3284 224 41 41 chr6 78683717 78683891 -103731351 - L1MD2 LINE L1 -10 6349 6176 1998 128 4 0 chr6 78683891 78684216 -103731026 - AluSx SINE Alu 0 326 1 3284 224 41 41 chr6 78684216 78684996 -103730246 - L1MD2 LINE L1 -182 6177 5394 382 299 71 15 chr6 78685296 78685474 -103729768 - MIR SINE MIR -14 194 3 1671 233 22 0 chr6 78685981 78686338 -103728904 + MLT1A1 LTR MaLR 1 365 0 320 308 153 40 chr6 78686799 78687225 -103728017 - L2 LINE L2 -2418 896 423 203 257 99 20 chr6 78687267 78687368 -103727874 + MIR SINE MIR 144 252 -10 311 361 46 8 chr6 78687409 78687539 -103727703 - MIR SINE MIR -57 151 17 30 27 0 0 chr6 78687750 78687787 -103727455 + AT_rich Low_complexity Low_complexity 1 37 0 674 167 9 0 chr6 78688037 78688151 -103727091 + FLAM_C SINE Alu 2 116 -17 402 21 0 0 chr6 78688152 78688199 -103727043 + (CATA)n Simple_repeat Simple_repeat 2 48 0 547 226 23 15 chr6 78688839 78688972 -103726270 + MER94 DNA DNA 1 134 0 203 146 24 0 chr6 78689497 78689538 -103725704 + (ATG)n Simple_repeat Simple_repeat 3 44 0 717 305 113 35 chr6 78689542 78690198 -103725044 + L2 LINE L2 2358 3065 -248 1029 205 0 82 chr6 78690322 78690566 -103724676 - MER58A DNA MER1_type 0 224 1 219 322 100 0 chr6 78690567 78690657 -103724585 + L2 LINE L2 3215 3313 0 342 321 22 7 chr6 78690672 78690809 -103724433 - MIR SINE MIR -46 216 78 1156 206 44 82 chr6 78690810 78691198 -103724044 - MLT1C LTR MaLR 0 467 95 292 265 0 0 chr6 78691698 78691766 -103723476 + MER103 DNA DNA 1 68 -98 222 205 0 0 chr6 78692060 78692099 -103723143 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1840 166 31 43 chr6 78692231 78692622 -103722620 + MLT1B LTR MaLR 1 386 -4 226 333 81 0 chr6 78692743 78692842 -103722400 + L2 LINE L2 3190 3296 -17 446 266 58 7 chr6 78692957 78693096 -103722146 - MIR SINE MIR -49 213 68 596 308 110 44 chr6 78693099 78693534 -103721708 + L3 LINE CR1 851 1314 -263 289 288 212 0 chr6 78693535 78693653 -103721589 + L3 LINE CR1 1430 1572 -5 6375 75 23 9 chr6 78693738 78694735 -103720507 + L1PA10 LINE L1 5160 6167 -1 405 0 0 0 chr6 78695315 78695360 -103719882 + (TG)n Simple_repeat Simple_repeat 2 46 0 320 43 22 0 chr6 78695912 78695958 -103719284 + (CCCCAG)n Simple_repeat Simple_repeat 6 52 0 28 86 0 0 chr6 78696020 78696090 -103719152 + GC_rich Low_complexity Low_complexity 1 70 0 258 179 0 0 chr6 78696181 78696237 -103719005 + (CTG)n Simple_repeat Simple_repeat 2 57 0 180 125 0 0 chr6 78698281 78698313 -103716929 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 243 0 0 0 chr6 78699884 78699911 -103715331 + (A)n Simple_repeat Simple_repeat 1 27 0 242 289 67 22 chr6 78700491 78700581 -103714661 + MIR SINE MIR 6 99 -163 180 356 67 10 chr6 78701376 78701480 -103713762 - MIR3 SINE MIR -88 120 11 191 328 15 0 chr6 78701541 78701608 -103713634 - MIR SINE MIR -6 256 189 2081 131 0 3 chr6 78703476 78703774 -103711468 + AluSx SINE Alu 1 297 -15 2377 94 3 0 chr6 78704706 78705014 -103710228 + AluSx SINE Alu 1 309 -3 550 367 176 15 chr6 78706031 78706709 -103708533 + L2 LINE L2 1994 2780 -534 316 412 115 14 chr6 78706829 78707108 -103708134 + L2 LINE L2 2941 3247 -25 264 59 0 0 chr6 78707124 78707158 -103708084 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 280 196 314 0 chr6 78707929 78708031 -103707211 - MER117 DNA MER1_type -43 154 21 284 276 118 47 chr6 78708062 78708189 -103707053 - MIR3 SINE MIR -67 141 6 28 0 0 0 chr6 78708487 78708515 -103706727 + AT_rich Low_complexity Low_complexity 1 28 0 228 35 0 0 chr6 78708789 78708818 -103706424 + (CA)n Simple_repeat Simple_repeat 2 30 0 1008 331 127 36 chr6 78709425 78710372 -103704870 - L2 LINE L2 -228 3044 1991 2575 228 21 48 chr6 78710378 78711106 -103704136 + L1ME2 LINE L1 5451 6158 -6 566 314 66 26 chr6 78711114 78711385 -103703857 - L2 LINE L2 -1345 1969 1688 335 260 106 0 chr6 78711502 78711625 -103703617 - L2 LINE L2 -1888 1426 1291 5837 99 25 4 chr6 78711844 78712689 -103702553 - L1PA10 LINE L1 0 6168 5306 1856 136 0 0 chr6 78712689 78712984 -103702258 + L1PA10 LINE L1 5014 5308 -838 247 143 24 0 chr6 78713007 78713049 -103702193 + MLT1K LTR MaLR 538 580 -8 928 274 175 11 chr6 78713536 78713908 -103701334 - LTR16A LTR ERVL 0 450 18 26 0 0 0 chr6 78714868 78714894 -103700348 + AT_rich Low_complexity Low_complexity 1 26 0 275 233 88 119 chr6 78715681 78715840 -103699402 - MIR SINE MIR -50 212 59 344 299 67 22 chr6 78715953 78716087 -103699155 + MIR SINE MIR 8 147 -115 22 35 0 0 chr6 78716882 78716911 -103698331 + AT_rich Low_complexity Low_complexity 1 29 0 1838 133 3 25 chr6 78718297 78718582 -103696660 - AluSq SINE Alu -6 307 29 183 42 0 0 chr6 78718882 78718906 -103696336 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr6 78719571 78719593 -103695649 + AT_rich Low_complexity Low_complexity 1 22 0 217 139 93 0 chr6 78722028 78722071 -103693171 - L2 LINE L2 -5 3308 3262 182 114 0 57 chr6 78723308 78723343 -103691899 + L3b LINE CR1 1279 1311 -272 188 294 59 0 chr6 78724251 78724302 -103690940 + L2 LINE L2 3215 3268 -4 402 175 210 126 chr6 78724905 78725048 -103690194 + MIR SINE MIR 87 241 -21 2819 88 0 0 chr6 78725048 78725412 -103689830 - THE1B LTR MaLR 0 364 1 268 252 234 0 chr6 78726185 78726292 -103688950 - L2 LINE L2 0 3313 3182 820 196 65 5 chr6 78726355 78726539 -103688703 + MIR SINE MIR 66 260 -2 2751 309 81 26 chr6 78726563 78728160 -103687082 - L2 LINE L2 -185 3128 1452 485 329 74 71 chr6 78728610 78729269 -103685973 - L2 LINE L2 -737 2577 1917 1219 146 55 16 chr6 78729626 78729880 -103685362 + L1MD3 LINE L1 7732 7995 0 2157 78 30 0 chr6 78730522 78730814 -103684428 - AluSg SINE Alu 0 304 5 1367 197 13 3 chr6 78731538 78731838 -103683404 - L1MB4 LINE L1 0 6180 5878 705 165 0 0 chr6 78731839 78731960 -103683282 + AluJb SINE Alu 183 303 -9 430 173 0 0 chr6 78731961 78732036 -103683206 - L1MB4 LINE L1 -303 5871 5797 219 186 0 0 chr6 78732073 78732116 -103683126 + GA-rich Low_complexity Low_complexity 3 45 0 2181 101 14 0 chr6 78732967 78733263 -103681979 - AluSp SINE Alu -13 300 1 1709 174 0 41 chr6 78733913 78734229 -103681013 + AluJb SINE Alu 3 305 -7 486 192 61 27 chr6 78735300 78735431 -103679811 - L1ME3A LINE L1 -8 6162 6029 301 158 0 0 chr6 78735464 78735521 -103679721 - AluSc SINE Alu 0 299 243 845 92 0 0 chr6 78735521 78735630 -103679612 - AluSc SINE Alu -200 109 1 242 294 71 0 chr6 78736341 78736426 -103678816 - MIR SINE MIR -170 92 2 23 68 0 0 chr6 78737184 78737228 -103678014 + AT_rich Low_complexity Low_complexity 1 44 0 569 245 197 0 chr6 78738104 78738251 -103676991 + MER5B DNA MER1_type 3 178 0 249 328 58 21 chr6 78738477 78738666 -103676576 + L2 LINE L2 3096 3291 -22 22 35 0 0 chr6 78739709 78739738 -103675504 + AT_rich Low_complexity Low_complexity 1 29 0 312 264 220 19 chr6 78739851 78740010 -103675232 - MIR3 SINE MIR -3 205 15 1711 151 6 4 chr6 78740929 78741244 -103673998 - L1PA13 LINE L1 -789 5357 5057 * 5616 94 4 5 chr6 78741242 78742036 -103673206 + L1PA13 LINE L1 5362 6154 -9 521 171 0 99 chr6 78742047 78742158 -103673084 - FLAM_A SINE Alu -26 116 17 440 220 0 68 chr6 78742331 78742449 -103672793 - L2 LINE L2 -15 3298 3189 239 253 10 81 chr6 78742751 78742850 -103672392 + L2 LINE L2 3218 3309 -4 324 0 0 0 chr6 78743082 78743118 -103672124 + (CA)n Simple_repeat Simple_repeat 1 36 0 31 26 0 0 chr6 78743266 78743304 -103671938 + AT_rich Low_complexity Low_complexity 1 38 0 2489 10 80 0 chr6 78745468 78745756 -103669486 + AluY SINE Alu 1 311 0 654 181 228 124 chr6 78746551 78746672 -103668570 - MSTC LTR MaLR 0 428 321 1656 189 29 0 chr6 78746672 78746952 -103668290 - AluJb SINE Alu -24 288 1 654 181 228 124 chr6 78746952 78747216 -103668026 - MSTC LTR MaLR -107 321 3 6344 229 78 30 chr6 78747218 78748872 -103666370 - MSTD-int LTR MaLR 0 1735 2 1269 237 107 14 chr6 78748876 78749230 -103666012 - MSTD LTR MaLR -2 394 8 566 297 54 22 chr6 78749306 78749528 -103665714 + MIR SINE MIR 34 262 0 2420 175 11 45 chr6 78749922 78750454 -103664788 - MER67D LTR ERV1 0 514 1 27 73 0 0 chr6 78750581 78750636 -103664606 + AT_rich Low_complexity Low_complexity 1 55 0 27 29 0 0 chr6 78752282 78752316 -103662926 + AT_rich Low_complexity Low_complexity 1 34 0 990 303 55 33 chr6 78754451 78754906 -103660336 - LTR33 LTR ERVL 0 521 57 7032 159 53 6 chr6 78754910 78755151 -103660091 + L1MA8 LINE L1 3984 4212 -2060 1504 102 0 5 chr6 78755151 78755348 -103659894 - AluSq SINE Alu -15 298 103 7032 159 53 6 chr6 78755348 78756575 -103658667 + L1MA8 LINE L1 4212 5529 -743 3302 159 42 6 chr6 78756580 78757227 -103658015 + L1MA8 LINE L1 5622 6291 0 221 169 15 46 chr6 78757241 78757306 -103657936 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 743 319 64 20 chr6 78757639 78757937 -103657305 + MLT1I LTR MaLR 9 319 -90 321 246 169 0 chr6 78757956 78758074 -103657168 + MIR SINE MIR 125 262 0 265 345 115 14 chr6 78758861 78759009 -103656233 + MIR SINE MIR 33 195 -67 2890 209 23 15 chr6 78759133 78759785 -103655457 + L1ME1 LINE L1 5510 6166 0 1635 141 3 88 chr6 78760867 78761207 -103654035 - AluJo SINE Alu -1 311 1 513 215 47 9 chr6 78761730 78761837 -103653405 - L2 LINE L2 0 3313 3203 358 227 192 69 chr6 78762168 78762376 -103652866 - MLT1H LTR MaLR -100 449 187 2032 139 0 7 chr6 78762376 78762686 -103652556 - AluSx SINE Alu -2 310 3 358 227 192 69 chr6 78762686 78762794 -103652448 - MLT1H LTR MaLR -362 187 94 457 239 9 0 chr6 78764115 78764228 -103651014 - L1ME2 LINE L1 -9 6155 6042 359 21 21 0 chr6 78764246 78764294 -103650948 + (CA)n Simple_repeat Simple_repeat 1 49 0 1041 228 86 64 chr6 78764294 78764572 -103650670 - L1ME2 LINE L1 -175 5989 5700 2245 105 0 0 chr6 78764572 78764866 -103650376 - AluSx SINE Alu -18 294 1 1041 228 86 64 chr6 78764866 78764960 -103650282 - L1ME2 LINE L1 -464 5700 5609 233 182 0 45 chr6 78764963 78765029 -103650213 - L1ME2 LINE L1 -848 5298 5236 217 140 60 0 chr6 78765031 78765081 -103650161 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 308 241 80 27 chr6 78765081 78765193 -103650049 - L1ME2 LINE L1 -902 5244 5127 315 270 98 81 chr6 78766219 78766393 -103648849 - MER5B DNA MER1_type 0 178 2 461 338 78 40 chr6 78766515 78766888 -103648354 + L3 LINE CR1 1087 1473 -104 23 0 0 0 chr6 78767071 78767094 -103648148 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 78767168 78767190 -103648052 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr6 78767278 78767311 -103647931 + AT_rich Low_complexity Low_complexity 1 33 0 463 212 61 0 chr6 78767437 78767536 -103647706 + MIR SINE MIR 158 262 0 228 267 10 50 chr6 78770730 78770831 -103644411 + CT-rich Low_complexity Low_complexity 1 97 0 264 30 0 0 chr6 78771128 78771161 -103644081 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 21 57 0 0 chr6 78772059 78772094 -103643148 + AT_rich Low_complexity Low_complexity 1 35 0 184 378 38 38 chr6 78772607 78772792 -103642450 + MIR SINE MIR 11 195 -67 31 0 0 0 chr6 78773140 78773171 -103642071 + AT_rich Low_complexity Low_complexity 1 31 0 1642 313 83 27 chr6 78773291 78774317 -103640925 - L2 LINE L2 -1 3312 2132 21 71 0 0 chr6 78775736 78775778 -103639464 + AT_rich Low_complexity Low_complexity 1 42 0 1981 133 10 7 chr6 78775919 78776220 -103639022 - AluSx SINE Alu -9 303 2 2479 74 0 0 chr6 78776506 78776805 -103638437 + AluY SINE Alu 1 299 -12 2200 129 0 0 chr6 78778926 78779235 -103636007 + AluSx SINE Alu 1 309 -3 246 218 73 65 chr6 78780336 78780460 -103634782 - MER112 DNA MER1_type -1 259 135 602 359 157 26 chr6 78780657 78780958 -103634284 - L2 LINE L2 -639 2675 2415 2147 128 73 12 chr6 78780958 78781301 -103633941 - THE1B LTR MaLR 0 364 1 602 359 157 26 chr6 78781301 78781844 -103633398 - L2 LINE L2 -899 2415 1720 2274 92 20 0 chr6 78782312 78782605 -103632637 - AluSg SINE Alu -9 301 3 4921 166 25 16 chr6 78782759 78783650 -103631592 + MER54A LTR ERVL 3 901 0 281 269 0 0 chr6 78783650 78783728 -103631514 + (TG)n Simple_repeat Simple_repeat 2 79 0 537 109 0 40 chr6 78784355 78784456 -103630786 + L1PB1 LINE L1 6052 6148 -3 514 234 9 9 chr6 78784665 78784772 -103630470 - MER81 DNA DNA -7 107 1 3984 173 34 58 chr6 78784976 78786176 -103629066 - L1MB7 LINE L1 -19 6165 4969 627 308 156 34 chr6 78786786 78787436 -103627806 - L2 LINE L2 0 3313 2561 22 35 0 0 chr6 78787792 78787821 -103627421 + AT_rich Low_complexity Low_complexity 1 29 0 219 139 0 0 chr6 78788599 78788635 -103626607 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 471 276 110 0 chr6 78790590 78790735 -103624507 - MIR SINE MIR -28 234 74 238 379 14 21 chr6 78791922 78792067 -103623175 + L2 LINE L2 2381 2524 -790 527 130 22 14 chr6 78794125 78794263 -103620979 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 921 199 144 98 chr6 78794394 78794503 -103620739 - MER63B DNA MER1_type -626 436 333 1633 176 3 25 chr6 78794503 78794787 -103620455 + AluJo SINE Alu 3 280 -32 227 93 23 0 chr6 78794787 78794830 -103620412 + (TAAAA)n Simple_repeat Simple_repeat 1 44 0 921 199 144 98 chr6 78794830 78795136 -103620106 - MER63B DNA MER1_type -728 334 1 555 192 51 19 chr6 78795400 78795556 -103619686 + MER53 DNA DNA 1 161 -28 21 0 0 0 chr6 78795590 78795611 -103619631 + AT_rich Low_complexity Low_complexity 1 21 0 334 319 63 54 chr6 78795802 78796119 -103619123 - L2 LINE L2 -663 2651 2332 1514 184 36 39 chr6 78796615 78796979 -103618263 - MLT1A1 LTR MaLR -2 363 1 306 285 146 20 chr6 78797863 78798014 -103617228 + L1ME LINE L1 5614 5783 -338 22 0 0 0 chr6 78798190 78798212 -103617030 + AT_rich Low_complexity Low_complexity 1 22 0 243 196 87 0 chr6 78798646 78798692 -103616550 + L2 LINE L2 3216 3265 -7 420 291 9 9 chr6 78799074 78799184 -103616058 - L2 LINE L2 0 3313 3204 2302 100 3 3 chr6 78801181 78801491 -103613751 + AluSq SINE Alu 1 310 -3 282 355 0 48 chr6 78801511 78801635 -103613607 - MIR3 SINE MIR -15 193 76 865 153 24 0 chr6 78801756 78802047 -103613195 + CT-rich Low_complexity Low_complexity 1 298 0 1650 192 0 26 chr6 78801870 78802360 -103612882 - AluJb SINE Alu 0 482 1 417 131 0 0 chr6 78804851 78804935 -103610307 + (TG)n Simple_repeat Simple_repeat 2 85 0 675 212 101 118 chr6 78804964 78805196 -103610046 - MLT1B LTR MaLR 0 390 166 1839 142 25 0 chr6 78805196 78805477 -103609765 - AluSx SINE Alu -22 290 3 675 212 101 118 chr6 78805477 78805641 -103609601 - MLT1B LTR MaLR -224 166 1 577 320 69 45 chr6 78807663 78807997 -103607245 + L2 LINE L2 2967 3308 -5 250 333 35 35 chr6 78808615 78808759 -103606483 - L1M4 LINE L1 -1947 4199 4056 223 258 15 45 chr6 78812738 78812804 -103602438 + L2 LINE L2 3153 3216 -56 291 93 0 0 chr6 78812815 78812858 -103602384 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 324 64 0 0 chr6 78813001 78813048 -103602194 + (TG)n Simple_repeat Simple_repeat 1 47 0 7606 29 0 0 chr6 78813268 78814824 -103600418 - L1PA3 LINE L1 0 6155 4600 1411 207 16 38 chr6 78815311 78815683 -103599559 - MLT1A1 LTR MaLR -1 364 1 42555 55 2 1 chr6 78815743 78821887 -103593355 + L1PA4 LINE L1 1 6150 -5 315 372 78 22 chr6 78821955 78822224 -103593018 - L2 LINE L2 -344 2970 2687 215 344 60 38 chr6 78822347 78822530 -103592712 + MIR3 SINE MIR 17 203 -5 21 0 0 0 chr6 78822678 78822699 -103592543 + AT_rich Low_complexity Low_complexity 1 21 0 4225 173 45 35 chr6 78823104 78823416 -103591826 - L1MB7 LINE L1 -1 6681 6374 2548 92 25 5 chr6 78823416 78823784 -103591458 - THE1C LTR MaLR 0 375 1 4225 173 45 35 chr6 78823784 78824364 -103590878 - L1MB7 LINE L1 -308 6374 5780 1879 263 54 17 chr6 78824359 78824391 -103590851 - L1MB7 LINE L1 -1788 4856 4827 * 2178 143 6 0 chr6 78824391 78824749 -103590493 - MER46B DNA MER2_type -1 235 1 1879 263 54 17 chr6 78824749 78825044 -103590198 - L1MB7 LINE L1 -1817 4827 4544 2427 68 0 0 chr6 78825044 78825338 -103589904 + AluY SINE Alu 1 294 -17 1879 263 54 17 chr6 78825338 78825698 -103589544 - L1MB7 LINE L1 -2100 4544 4143 330 211 10 0 chr6 78825693 78825797 -103589445 - L1MB7 LINE L1 -2969 3675 3571 * 907 237 21 13 chr6 78825851 78826087 -103589155 - L1MB7 LINE L1 -6281 261 24 2296 291 160 35 chr6 78826967 78828211 -103587031 - L2 LINE L2 -1 3312 1898 223 296 194 10 chr6 78829395 78829493 -103585749 + MIR SINE MIR 21 136 -72 906 277 81 58 chr6 78830989 78831473 -103583769 - MLT1J LTR MaLR -1 510 16 506 257 108 7 chr6 78833762 78833910 -103581332 + MIR SINE MIR 97 259 -3 194 289 87 115 chr6 78834194 78834298 -103580944 - MIR SINE MIR -81 127 27 2164 106 10 0 chr6 78834300 78834602 -103580640 - AluSx SINE Alu -7 305 1 199 256 211 11 chr6 78834746 78834836 -103580406 - MIR3 SINE MIR -95 113 6 1897 267 30 17 chr6 78835048 78835583 -103579659 - MLT1F LTR MaLR 0 542 1 21 0 0 0 chr6 78837781 78837802 -103577440 + AT_rich Low_complexity Low_complexity 1 21 0 1485 179 113 15 chr6 78838734 78839063 -103576179 + MLT1A1 LTR MaLR 4 364 -1 512 200 174 13 chr6 78839523 78839678 -103575564 - MER5A DNA MER1_type 0 189 10 280 284 0 0 chr6 78841527 78841608 -103573634 + (TG)n Simple_repeat Simple_repeat 1 81 0 219 350 30 20 chr6 78842399 78842499 -103572743 - L2 LINE L2 -216 3056 2956 2186 104 0 10 chr6 78842882 78843181 -103572061 - AluSq SINE Alu -17 296 1 23 0 0 0 chr6 78843292 78843315 -103571927 + AT_rich Low_complexity Low_complexity 1 23 0 584 117 47 178 chr6 78843541 78843755 -103571487 - MER53 DNA DNA -3 186 1 278 331 96 42 chr6 78844043 78844209 -103571033 - MIR3 SINE MIR -5 203 29 680 275 54 18 chr6 78844423 78844645 -103570597 + MIR SINE MIR 33 262 0 213 324 0 0 chr6 78845760 78845831 -103569411 + (TTCA)n Simple_repeat Simple_repeat 4 74 0 192 219 266 0 chr6 78846062 78846126 -103569116 + L2 LINE L2 3191 3271 -1 975 105 6 55 chr6 78846912 78847093 -103568149 - L1MA10 LINE L1 0 6334 6163 252 0 0 0 chr6 78847490 78847518 -103567724 + (A)n Simple_repeat Simple_repeat 1 28 0 315 0 0 0 chr6 78847518 78847553 -103567689 + (TA)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr6 78849472 78849494 -103565748 + AT_rich Low_complexity Low_complexity 1 22 0 247 347 48 24 chr6 78849494 78849618 -103565624 + MIR3 SINE MIR 67 193 -15 225 239 134 15 chr6 78849826 78849893 -103565349 - MIR3 SINE MIR -47 161 87 27 49 0 0 chr6 78850264 78850305 -103564937 + AT_rich Low_complexity Low_complexity 1 41 0 661 273 50 38 chr6 78851144 78851382 -103563860 - MIR SINE MIR -15 247 7 328 224 68 34 chr6 78851859 78852006 -103563236 - L1ME4a LINE L1 -245 5876 5725 225 0 0 0 chr6 78852555 78852580 -103562662 + (CA)n Simple_repeat Simple_repeat 1 25 0 31 26 0 0 chr6 78853395 78853433 -103561809 + AT_rich Low_complexity Low_complexity 1 38 0 3146 215 61 14 chr6 78853552 78854654 -103560588 + L1ME1 LINE L1 4915 6064 -102 333 235 47 0 chr6 78854878 78854963 -103560279 + L1ME1 LINE L1 5976 6064 -102 25 31 0 0 chr6 78855250 78855282 -103559960 + AT_rich Low_complexity Low_complexity 1 32 0 389 346 43 35 chr6 78855341 78855598 -103559644 - L1ME4a LINE L1 -2280 5528 5270 25 0 0 0 chr6 78856673 78856698 -103558544 + AT_rich Low_complexity Low_complexity 1 25 0 442 267 96 7 chr6 78857687 78857822 -103557420 - L2 LINE L2 0 3313 3167 467 254 18 9 chr6 78861112 78861226 -103554016 - MIR SINE MIR -135 127 13 378 280 153 37 chr6 78862257 78862446 -103552796 + MIR SINE MIR 3 213 -49 6471 87 11 2 chr6 78863618 78864819 -103550423 - L1PA8 LINE L1 0 6172 4967 425 324 68 0 chr6 78864944 78865120 -103550122 - MIR SINE MIR 0 262 75 1212 180 5 0 chr6 78865155 78865377 -103549865 - L1P LINE L1 -1933 4213 3991 5174 117 4 3 chr6 78865378 78866136 -103549106 + L1PA15 LINE L1 5398 6156 -9 1223 70 41 0 chr6 78866717 78866889 -103548353 + L1PA13 LINE L1 5982 6160 -3 2516 74 0 0 chr6 78867205 78867516 -103547726 - AluY SINE Alu 0 311 1 1755 169 0 13 chr6 78868930 78869238 -103546004 - AluJb SINE Alu -8 304 1 294 291 94 16 chr6 78869497 78869624 -103545618 + Charlie8 DNA MER1_type 75 211 -2206 2308 88 0 31 chr6 78869641 78869820 -103545422 - AluSp SINE Alu -6 307 141 189 0 0 0 chr6 78869820 78869841 -103545401 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2308 88 0 31 chr6 78869841 78869978 -103545264 - AluSp SINE Alu -172 141 1 253 290 50 20 chr6 78870549 78870649 -103544593 + L2 LINE L2 3211 3313 0 28 29 0 0 chr6 78871866 78871901 -103543341 + AT_rich Low_complexity Low_complexity 1 35 0 427 188 47 0 chr6 78872236 78872321 -103542921 - LTR16C LTR ERVL -23 468 380 1481 195 85 56 chr6 78872336 78872782 -103542460 - MLT1C LTR MaLR -8 459 1 779 251 97 40 chr6 78872809 78873108 -103542134 - LTR16C LTR ERVL -175 316 1 916 169 174 27 chr6 78873510 78873729 -103541513 - MLT1B LTR MaLR -3 387 137 2222 111 10 0 chr6 78873745 78874042 -103541200 + AluSq SINE Alu 1 300 -13 369 75 0 0 chr6 78874058 78874111 -103541131 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 427 187 0 13 chr6 78874111 78874186 -103541056 - MLT1B LTR MaLR -316 74 1 219 245 0 0 chr6 78874198 78874247 -103540995 + GA-rich Low_complexity Low_complexity 1 49 0 191 341 122 0 chr6 78874295 78874377 -103540865 + MIR3 SINE MIR 65 156 -52 26 64 0 0 chr6 78875150 78875197 -103540045 + AT_rich Low_complexity Low_complexity 1 47 0 591 256 50 43 chr6 78875297 78875555 -103539687 - MIR SINE MIR 0 262 3 297 295 48 9 chr6 78876283 78876388 -103538854 + MIR SINE MIR 95 203 -59 * 1385 278 62 63 chr6 78876379 78877461 -103537781 + L2 LINE L2 2233 3313 0 294 273 121 10 chr6 78877585 78877684 -103537558 - MIR3 SINE MIR -37 171 84 2319 50 43 0 chr6 78878351 78878633 -103536609 + AluY SINE Alu 1 294 -17 194 320 0 0 chr6 78879829 78879879 -103535363 - L2 LINE L2 -35 3237 3188 276 359 34 8 chr6 78880336 78880453 -103534789 + MER5A DNA MER1_type 47 166 -23 866 197 42 26 chr6 78880548 78880741 -103534501 + MER58 DNA MER1_type 2 197 -144 1262 316 119 36 chr6 78880770 78880829 -103534413 + L3 LINE CR1 663 716 -861 1699 160 7 29 chr6 78880829 78881136 -103534106 + AluJb SINE Alu 7 306 -6 1262 316 119 36 chr6 78881136 78881901 -103533341 + L3 LINE CR1 716 1555 -22 198 372 51 0 chr6 78882124 78882261 -103532981 - L2 LINE L2 -212 3060 2917 239 256 103 60 chr6 78882312 78882429 -103532813 - L2 LINE L2 -2 3270 3149 323 202 202 11 chr6 78882554 78882643 -103532599 - L2 LINE L2 -5 3308 3203 640 183 92 7 chr6 78883669 78883811 -103531431 + Charlie4 DNA MER1_type 1804 1957 -4 1861 168 0 3 chr6 78884090 78884387 -103530855 + AluJb SINE Alu 1 296 -16 24 32 0 0 chr6 78884648 78884679 -103530563 + AT_rich Low_complexity Low_complexity 1 31 0 359 308 19 0 chr6 78884688 78884792 -103530450 - FLAM_A SINE Alu -27 106 1 1536 196 39 18 chr6 78884799 78884962 -103530280 - AluJo SINE Alu -21 291 118 184 30 61 0 chr6 78884962 78884995 -103530247 + A-rich Low_complexity Low_complexity 102 136 0 1536 196 39 18 chr6 78884995 78885116 -103530126 - AluJo SINE Alu -194 118 1 259 114 0 0 chr6 78885447 78885482 -103529760 - MLT1A2 LTR MaLR -339 35 1 510 254 14 7 chr6 78885826 78885964 -103529278 - MIR SINE MIR -5 257 119 856 221 24 65 chr6 78885964 78886279 -103528963 - MLT1A2 LTR MaLR 0 390 27 207 299 0 15 chr6 78886301 78886368 -103528874 - MIR SINE MIR -127 135 70 595 298 168 20 chr6 78886463 78887158 -103528084 + L2 LINE L2 2526 3313 0 410 304 0 0 chr6 78887432 78887547 -103527695 - MIR SINE MIR -102 160 46 210 143 48 0 chr6 78888368 78888410 -103526832 + A-rich Low_complexity Low_complexity 2 45 0 236 269 0 15 chr6 78888566 78888633 -103526609 + (CATATA)n Simple_repeat Simple_repeat 5 70 0 1867 150 3 3 chr6 78889310 78889596 -103525646 + AluJo SINE Alu 1 286 -26 2038 108 0 81 chr6 78889663 78889998 -103525244 + AluSx SINE Alu 1 308 -4 1036 296 92 1 chr6 78890079 78890554 -103524688 + L2 LINE L2 2546 3066 -247 787 233 33 57 chr6 78892026 78892271 -103522971 - MIR SINE MIR -3 259 21 857 287 45 0 chr6 78893383 78893627 -103521615 - MIR SINE MIR 0 262 8 21 0 0 0 chr6 78894623 78894644 -103520598 + AT_rich Low_complexity Low_complexity 1 21 0 553 301 92 0 chr6 78895346 78895499 -103519743 + MER5A DNA MER1_type 17 183 -6 208 378 14 0 chr6 78895661 78895735 -103519507 + MIR3 SINE MIR 119 193 -15 205 324 15 0 chr6 78896296 78896364 -103518878 + L2 LINE L2 3201 3269 -3 298 343 151 24 chr6 78896375 78896667 -103518575 - L2 LINE L2 -399 2915 2587 7999 132 12 23 chr6 78896843 78897913 -103517329 - HSMAR2 DNA Mariner -11 1291 235 2092 100 0 31 chr6 78897913 78898264 -103516978 - AluSq SINE Alu 0 344 3 7999 132 12 23 chr6 78898264 78898496 -103516746 - HSMAR2 DNA Mariner -1067 235 2 288 145 26 26 chr6 78898608 78898684 -103516558 + GA-rich Low_complexity Low_complexity 1 76 0 312 300 36 18 chr6 78898861 78898971 -103516271 + LTR67 LTR ERVL 92 203 -354 1042 188 0 0 chr6 78899148 78899324 -103515918 - AluJ SINE Alu -4 308 133 4911 9 0 2 chr6 78899332 78899888 -103515354 + L1PA2 LINE L1 5597 6151 -4 742 189 0 0 chr6 78899888 78900015 -103515227 - AluJ SINE Alu -175 127 1 416 133 0 13 chr6 78901955 78902030 -103513212 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 297 197 0 0 chr6 78902919 78902985 -103512257 + (TA)n Simple_repeat Simple_repeat 1 66 0 290 246 44 0 chr6 78903210 78903324 -103511918 - L1MEd LINE L1 -3855 3102 2984 257 313 77 31 chr6 78903547 78903806 -103511436 - L1MEd LINE L1 -5829 1118 848 993 241 33 5 chr6 78904239 78904451 -103510791 + MER58A DNA MER1_type 2 219 -5 33 25 0 0 chr6 78904640 78904680 -103510562 + AT_rich Low_complexity Low_complexity 1 40 0 2066 72 3 45 chr6 78904680 78904971 -103510271 - AluY SINE Alu -32 279 1 183 262 115 16 chr6 78905609 78905670 -103509572 + L2 LINE L2 1882 1948 -1366 465 226 61 66 chr6 78906122 78906303 -103508939 - MER112 DNA MER1_type 0 260 81 2145 121 13 0 chr6 78907998 78908303 -103506939 - AluSx SINE Alu -3 309 1 345 252 103 0 chr6 78908336 78908443 -103506799 + MIR SINE MIR 74 191 -71 21 0 0 0 chr6 78909917 78909938 -103505304 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 78912151 78912173 -103503069 + AT_rich Low_complexity Low_complexity 1 22 0 1020 188 98 21 chr6 78913342 78913576 -103501666 - L1M4 LINE L1 -503 5681 5430 1697 267 31 17 chr6 78914169 78914585 -103500657 - L1MEd LINE L1 -6424 435 14 1279 196 53 46 chr6 78914652 78914933 -103500309 - AluJo SINE Alu -21 291 9 209 108 27 0 chr6 78914942 78914979 -103500263 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 21 36 0 0 chr6 78915002 78915030 -103500212 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 78915181 78915203 -103500039 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 78915260 78915282 -103499960 + AT_rich Low_complexity Low_complexity 1 22 0 188 111 28 0 chr6 78915369 78915405 -103499837 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 187 26 0 79 chr6 78916335 78916373 -103498869 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1988 139 0 0 chr6 78916987 78917294 -103497948 + AluSx SINE Alu 3 309 0 662 157 16 8 chr6 78917695 78917863 -103497379 - AluJb SINE Alu 0 330 162 948 153 51 25 chr6 78917895 78918091 -103497151 - AluJb SINE Alu -106 206 6 257 50 0 25 chr6 78918390 78918430 -103496812 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 12018 30 3 0 chr6 78918430 78920617 -103494625 - L1PA3 LINE L1 -24 6131 3939 1521 306 82 15 chr6 78921708 78922629 -103492613 + L2 LINE L2 2315 3305 -8 21 82 0 0 chr6 78923907 78923956 -103491286 + AT_rich Low_complexity Low_complexity 1 49 0 202 308 8 94 chr6 78924039 78924156 -103491086 - MIR SINE MIR -68 140 34 213 39 0 0 chr6 78924368 78924394 -103490848 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr6 78925236 78925265 -103489977 + AT_rich Low_complexity Low_complexity 1 29 0 770 233 85 0 chr6 78926282 78926518 -103488724 - MER58B DNA MER1_type -1 340 74 309 208 104 118 chr6 78926575 78926719 -103488523 - MIR SINE MIR -7 255 114 493 268 0 24 chr6 78926794 78926917 -103488325 - MER5A DNA MER1_type -9 180 61 325 278 14 0 chr6 78926920 78926992 -103488250 - MER58B DNA MER1_type -267 74 2 619 231 0 0 chr6 78927064 78927198 -103488044 - L1 LINE L1 -3486 2660 2527 * 8707 207 29 30 chr6 78927197 78929370 -103485872 + L1 LINE L1 2689 4859 -1287 * 38317 79 8 9 chr6 78929366 78931900 -103483342 - L1PA5 LINE L1 -4 6150 3615 2265 106 0 6 chr6 78931900 78932212 -103483030 - AluY SINE Alu -1 310 1 38317 79 8 9 chr6 78932212 78935830 -103479412 - L1PA5 LINE L1 -2539 3615 5 2563 160 17 25 chr6 78935829 78936684 -103478558 + L1P5 LINE L1 4845 5696 -455 * 3178 174 59 20 chr6 78937404 78938083 -103477159 - MER67C LTR ERV1 -5 705 55 25 0 0 0 chr6 78939798 78939823 -103475419 + AT_rich Low_complexity Low_complexity 1 25 0 7991 78 5 9 chr6 78941029 78942105 -103473137 - MER11C LTR ERVK 0 1071 1 212 269 78 64 chr6 78942168 78942309 -103472933 - MIR SINE MIR -7 255 113 193 209 144 115 chr6 78942584 78942723 -103472519 - MIR SINE MIR -7 255 113 396 165 0 51 chr6 78942931 78943010 -103472232 - AluJ/FRAM SINE Alu -1 301 227 189 265 0 157 chr6 78943298 78943381 -103471861 + MIR SINE MIR 20 89 -173 488 326 89 13 chr6 78943558 78943782 -103471460 + MIR SINE MIR 15 255 -7 227 390 57 0 chr6 78944224 78944329 -103470913 + MIR SINE MIR 54 164 -98 428 273 131 72 chr6 78945675 78946338 -103468904 + HAL1 LINE L1 985 1686 -821 574 321 60 15 chr6 78946369 78946771 -103468471 + L1M4 LINE L1 3791 4210 -1936 371 276 64 30 chr6 78946975 78947303 -103467939 - L1ME LINE L1 -536 5585 5246 21 0 0 0 chr6 78947315 78947336 -103467906 + AT_rich Low_complexity Low_complexity 1 21 0 2546 50 0 0 chr6 78947437 78947737 -103467505 - AluY SINE Alu -10 301 2 204 135 0 0 chr6 78947769 78947806 -103467436 + (TG)n Simple_repeat Simple_repeat 2 38 0 771 227 29 14 chr6 78947993 78948200 -103467042 - L1MB7 LINE L1 -69 6115 5906 23 68 0 0 chr6 78948348 78948392 -103466850 + AT_rich Low_complexity Low_complexity 1 44 0 492 306 22 11 chr6 78948449 78948671 -103466571 + L1MC/D LINE L1 5431 5657 -509 241 313 0 0 chr6 78948717 78948800 -103466442 + (TA)n Simple_repeat Simple_repeat 1 83 0 198 71 0 0 chr6 78948809 78948837 -103466405 + (TG)n Simple_repeat Simple_repeat 1 28 0 559 301 165 40 chr6 78948885 78949339 -103465903 + L2 LINE L2 2792 3306 -7 22 56 0 0 chr6 78949401 78949437 -103465805 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr6 78951334 78951359 -103463883 + AT_rich Low_complexity Low_complexity 1 25 0 330 368 79 7 chr6 78951496 78951648 -103463594 + MIR3 SINE MIR 31 193 -15 2151 152 12 19 chr6 78954173 78954574 -103460668 - LTR27-int LTR ERV1 -231 6765 3650 996 124 0 0 chr6 78954574 78954719 -103460523 - AluSp/q SINE Alu 0 313 169 5400 102 42 42 chr6 78954719 78955035 -103460207 - LTR27-int LTR ERV1 -610 5336 5021 2082 130 3 0 chr6 78955035 78955334 -103459908 + AluSc SINE Alu 1 300 -9 5400 102 42 42 chr6 78955334 78955909 -103459333 - LTR27-int LTR ERV1 -924 5022 4445 * 7113 133 65 26 chr6 78955908 78957534 -103457708 - LTR27-int LTR ERV1 -2179 4817 1977 686 149 32 58 chr6 78957537 78957691 -103457551 - LTR27-int LTR ERV1 -4807 1139 990 459 198 0 23 chr6 78957691 78957777 -103457465 - LTR27-int LTR ERV1 -885 3995 3912 6388 191 71 50 chr6 78957790 78959426 -103455816 - LTR27-int LTR ERV1 -444 4773 1 2253 217 14 18 chr6 78959657 78960159 -103455083 - LTR27 LTR ERV1 -130 506 7 2565 47 0 0 chr6 78960739 78961039 -103454203 - AluY SINE Alu -11 300 1 192 371 11 0 chr6 78961245 78961334 -103453908 - L3b LINE CR1 -177 1406 1317 1976 188 57 2 chr6 78961461 78961865 -103453377 - MSTB LTR MaLR 0 426 1 868 239 32 5 chr6 78961915 78962103 -103453139 - MIR SINE MIR -5 257 65 210 118 0 0 chr6 78962397 78962431 -103452811 + (TA)n Simple_repeat Simple_repeat 2 35 0 303 214 60 12 chr6 78962434 78962518 -103452724 + L1MC4 LINE L1 6616 6703 -1339 303 214 60 12 chr6 78962521 78962605 -103452637 + L1MC4 LINE L1 6616 6703 -1339 317 109 18 0 chr6 78962608 78962663 -103452579 + (TA)n Simple_repeat Simple_repeat 2 57 0 235 194 75 43 chr6 78962674 78962767 -103452475 + L1MC4 LINE L1 6614 6709 -1333 205 181 53 0 chr6 78962769 78962863 -103452379 + (TA)n Simple_repeat Simple_repeat 1 99 0 269 296 49 0 chr6 78962902 78962983 -103452259 + MIR3 SINE MIR 83 167 -41 21 57 0 0 chr6 78963552 78963587 -103451655 + AT_rich Low_complexity Low_complexity 1 35 0 1909 273 19 2 chr6 78964235 78964663 -103450579 + L1M3c LINE L1 1 435 -5706 1128 91 24 13 chr6 78964797 78965076 -103450166 - THE1B-int LTR MaLR -890 690 338 731 93 19 0 chr6 78965073 78965181 -103450061 - THE1B-int LTR MaLR -1470 110 1 * 2342 115 5 30 chr6 78965181 78965554 -103449688 - THE1B LTR MaLR 0 364 1 4662 150 38 32 chr6 78965555 78966493 -103448749 + L1MA9 LINE L1 5369 6312 0 540 271 109 43 chr6 78967023 78967463 -103447779 - L1MEc LINE L1 -3528 2898 2430 434 296 106 6 chr6 78967784 78968105 -103447137 - L1MEc LINE L1 -4593 2014 1662 7266 26 28 0 chr6 78968112 78969029 -103446213 - L1PA4 LINE L1 -2 6153 5218 21326 181 43 64 chr6 78969129 78974282 -103440960 - L1PA4 LINE L1 -1099 5047 7 273 289 91 24 chr6 78974296 78974406 -103440836 - L1MEc LINE L1 -4971 1455 1354 1049 263 66 9 chr6 78974406 78974756 -103440486 - MLT1A2 LTR MaLR -4 370 1 273 289 91 24 chr6 78974756 78974853 -103440389 - L1MEc LINE L1 -5072 1354 1234 285 239 0 0 chr6 78975222 78975289 -103439953 + CT-rich Low_complexity Low_complexity 2 68 0 372 198 12 0 chr6 78975640 78975721 -103439521 - L1M4 LINE L1 -1576 4570 4489 980 219 5 5 chr6 78975721 78975917 -103439325 - MLT1B LTR MaLR -1 389 194 210 171 0 0 chr6 78975948 78975983 -103439259 + (CATA)n Simple_repeat Simple_repeat 2 36 0 258 95 0 0 chr6 78975985 78976027 -103439215 + (GA)n Simple_repeat Simple_repeat 1 42 0 477 201 145 50 chr6 78976042 78976201 -103439041 - MLT1B LTR MaLR -200 190 17 1752 272 51 50 chr6 78976215 78976342 -103438900 - L1M4 LINE L1 -1664 4482 4357 785 170 0 30 chr6 78976342 78976477 -103438765 + FLAM_C SINE Alu 1 131 -2 1752 272 51 50 chr6 78976477 78977715 -103437527 - L1M4 LINE L1 -1789 4357 3115 3258 255 8 46 chr6 78977935 78978657 -103436585 - MER50 LTR ERV1 -23 711 17 451 309 42 37 chr6 78978713 78978930 -103436312 - L2 LINE L2 -888 2426 2209 25 65 0 0 chr6 78978942 78978988 -103436254 + AT_rich Low_complexity Low_complexity 1 46 0 985 287 106 48 chr6 78979327 78979385 -103435857 + L2 LINE L2 2659 2712 -601 1762 141 10 34 chr6 78979385 78979682 -103435560 + AluJb SINE Alu 3 292 -20 985 287 106 48 chr6 78979682 78980101 -103435141 + L2 LINE L2 2712 3169 -144 2021 112 30 14 chr6 78980101 78980396 -103434846 - AluSg SINE Alu -10 300 1 985 287 106 48 chr6 78980396 78980541 -103434701 + L2 LINE L2 3169 3304 -9 22 0 0 0 chr6 78980578 78980600 -103434642 + AT_rich Low_complexity Low_complexity 1 22 0 607 288 100 9 chr6 78980643 78980872 -103434370 - MIR SINE MIR -2 260 11 301 261 27 63 chr6 78981037 78981148 -103434094 + L1MC4 LINE L1 6597 6703 -1339 777 246 13 40 chr6 78981278 78981502 -103433740 - MIR SINE MIR -25 237 20 1016 245 190 29 chr6 78982606 78983201 -103432041 - HAL1 LINE L1 -585 1922 1232 330 324 56 64 chr6 78983773 78984023 -103431219 - HAL1 LINE L1 -2170 337 90 21 0 0 0 chr6 78984467 78984488 -103430754 + AT_rich Low_complexity Low_complexity 1 21 0 2274 92 0 10 chr6 78985153 78985458 -103429784 + AluSq SINE Alu 1 302 -11 21 71 0 0 chr6 78986623 78986665 -103428577 + AT_rich Low_complexity Low_complexity 1 42 0 2228 126 0 0 chr6 78987007 78987317 -103427925 - AluSx SINE Alu -2 310 1 279 320 170 14 chr6 78990060 78990362 -103424880 - L2 LINE L2 -219 3053 2710 226 296 148 9 chr6 78990372 78990480 -103424762 - L2 LINE L2 0 3313 3191 238 241 106 19 chr6 78990602 78990762 -103424480 + MIR SINE MIR 21 262 0 224 354 71 16 chr6 78990757 78990884 -103424358 - L2 LINE L2 -6 3307 3174 * 216 312 145 39 chr6 78991101 78991335 -103423907 - L2 LINE L2 -767 2547 2289 190 254 95 0 chr6 78991700 78991763 -103423479 - MIR SINE MIR -74 188 120 25 0 0 0 chr6 78993037 78993062 -103422180 + AT_rich Low_complexity Low_complexity 1 25 0 14658 139 61 14 chr6 78993371 78995967 -103419275 + Tigger2 DNA MER2_type 1 2718 0 26 30 0 0 chr6 78996444 78996477 -103418765 + AT_rich Low_complexity Low_complexity 1 33 0 1873 110 29 4 chr6 78996596 78996869 -103418373 + AluSx SINE Alu 1 280 -32 410 141 0 13 chr6 78996871 78996949 -103418293 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 2086 112 3 53 chr6 78997218 78997539 -103417703 - AluSc SINE Alu -4 305 1 3121 91 30 0 chr6 78997567 78998007 -103417235 - MLT2A2 LTR ERVL 0 453 1 31645 80 12 8 chr6 78998007 78999926 -103415316 - HERVL-A2 LTR ERVL 0 5654 3745 2308 106 3 0 chr6 78999926 79000238 -103415004 + AluSp SINE Alu 1 313 0 31645 80 12 8 chr6 79000238 79002501 -103412741 - HERVL-A2 LTR ERVL -1909 3745 1453 1733 84 13 4 chr6 79002504 79002741 -103412501 - MLT2A2 LTR ERVL -214 239 1 455 271 25 0 chr6 79003360 79003478 -103411764 + MIR SINE MIR 84 204 -58 1107 167 14 5 chr6 79003752 79003967 -103411275 + L1 LINE L1 4415 4631 -1515 250 282 0 39 chr6 79004051 79004129 -103411113 + MIR SINE MIR 188 262 0 184 276 82 20 chr6 79004226 79004324 -103410918 - L2 LINE L2 -81 3232 3129 1829 146 58 28 chr6 79005479 79005843 -103409399 - THE1C LTR MaLR 0 375 1 23 54 0 0 chr6 79005959 79005996 -103409246 + AT_rich Low_complexity Low_complexity 1 37 0 408 125 0 0 chr6 79006081 79006145 -103409097 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 351 0 0 0 chr6 79006304 79006343 -103408899 + (T)n Simple_repeat Simple_repeat 1 39 0 445 316 146 71 chr6 79007433 79007785 -103407457 + HAL1 LINE L1 1204 1528 -979 4029 124 11 65 chr6 79007785 79008540 -103406702 + L1MA4A LINE L1 5584 6297 -6 445 316 146 71 chr6 79008540 79008865 -103406377 + HAL1 LINE L1 1528 1932 -575 21 57 0 0 chr6 79008957 79008992 -103406250 + AT_rich Low_complexity Low_complexity 1 35 0 22 80 0 0 chr6 79009783 79009833 -103405409 + AT_rich Low_complexity Low_complexity 1 50 0 231 247 103 31 chr6 79009972 79010069 -103405173 - L2 LINE L2 -5 3308 3205 360 0 0 0 chr6 79010593 79010633 -103404609 + (TG)n Simple_repeat Simple_repeat 1 40 0 2184 151 2 63 chr6 79011929 79012339 -103402903 - MLT1B LTR MaLR 0 390 6 528 249 30 41 chr6 79012545 79012714 -103402528 + MIR SINE MIR 86 252 -10 2265 104 3 0 chr6 79012715 79013024 -103402218 - AluY SINE Alu -1 310 1 215 362 43 35 chr6 79013342 79013458 -103401784 - MER5A DNA MER1_type 0 189 73 375 229 0 73 chr6 79013489 79013598 -103401644 - MER5B DNA MER1_type -20 158 58 249 268 183 29 chr6 79015518 79015764 -103399478 + L1ME4a LINE L1 5713 5996 -125 22 56 0 0 chr6 79016759 79016795 -103398447 + AT_rich Low_complexity Low_complexity 1 36 0 210 37 0 0 chr6 79017492 79017519 -103397723 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2431 83 0 10 chr6 79019357 79019671 -103395571 + AluY SINE Alu 1 311 0 326 286 71 0 chr6 79020022 79020162 -103395080 + MER103 DNA DNA 7 156 -10 370 221 147 0 chr6 79020422 79020517 -103394725 + MIR SINE MIR 49 157 -105 23 33 0 0 chr6 79021923 79021953 -103393289 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 79022043 79022065 -103393177 + AT_rich Low_complexity Low_complexity 1 22 0 2113 114 3 3 chr6 79024365 79024663 -103390579 - AluSx SINE Alu -14 298 1 387 324 83 37 chr6 79025055 79025296 -103389946 + MIR SINE MIR 5 256 -6 282 29 0 0 chr6 79030932 79030967 -103384275 + (TG)n Simple_repeat Simple_repeat 1 35 0 30 89 0 0 chr6 79031701 79031780 -103383462 + AT_rich Low_complexity Low_complexity 1 79 0 2425 67 3 3 chr6 79033310 79033610 -103381632 + AluY SINE Alu 1 300 -11 21 0 0 0 chr6 79034196 79034217 -103381025 + AT_rich Low_complexity Low_complexity 1 21 0 240 203 14 29 chr6 79034726 79034795 -103380447 + A-rich Low_complexity Low_complexity 3 70 0 229 195 0 0 chr6 79035765 79035806 -103379436 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr6 79035822 79035844 -103379398 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr6 79036242 79036267 -103378975 + AT_rich Low_complexity Low_complexity 1 25 0 249 350 78 8 chr6 79036572 79036742 -103378500 - MIR SINE MIR -63 145 16 4314 191 22 31 chr6 79037608 79038565 -103376677 - L1MA10 LINE L1 0 6334 5387 24 32 0 0 chr6 79039440 79039471 -103375771 + AT_rich Low_complexity Low_complexity 1 31 0 229 363 47 18 chr6 79041525 79041696 -103373546 + L3b LINE CR1 1305 1480 -103 29 0 0 0 chr6 79042394 79042423 -103372819 + AT_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr6 79043637 79043687 -103371555 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 79043769 79043794 -103371448 + AT_rich Low_complexity Low_complexity 1 25 0 3092 131 25 32 chr6 79044018 79044606 -103370636 - L1MC2 LINE L1 0 6344 5761 3089 102 25 31 chr6 79044706 79045224 -103370018 - L1MA5A LINE L1 0 6297 5783 26 0 0 0 chr6 79045455 79045481 -103369761 + AT_rich Low_complexity Low_complexity 1 26 0 1345 139 65 0 chr6 79046322 79046538 -103368704 + MER30 DNA MER1_type 1 230 0 1504 214 0 22 chr6 79046559 79046876 -103368366 + AluJo SINE Alu 3 312 0 251 186 0 17 chr6 79046878 79046937 -103368305 + GA-rich Low_complexity Low_complexity 3 60 0 1844 170 0 3 chr6 79047043 79047331 -103367911 + AluJb SINE Alu 11 297 -15 204 179 0 0 chr6 79047646 79047685 -103367557 + (TA)n Simple_repeat Simple_repeat 1 39 0 594 196 149 12 chr6 79049951 79050119 -103365123 - MER112 DNA MER1_type -6 254 64 203 254 34 0 chr6 79050120 79050179 -103365063 + (TA)n Simple_repeat Simple_repeat 1 61 0 23 33 0 0 chr6 79050229 79050259 -103364983 + AT_rich Low_complexity Low_complexity 1 30 0 237 65 0 0 chr6 79050259 79050290 -103364952 + (T)n Simple_repeat Simple_repeat 1 31 0 2210 83 3 23 chr6 79050364 79050664 -103364578 + AluSq SINE Alu 1 294 -19 2310 92 3 0 chr6 79101863 79102158 -103313084 + AluSp SINE Alu 3 298 -15 1930 109 50 0 chr6 79103542 79103825 -103311417 - AluSg SINE Alu -13 297 1 213 306 82 10 chr6 79104067 79104165 -103311077 + MIR SINE MIR 20 124 -138 269 26 26 0 chr6 79104168 79104206 -103311036 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 252 300 0 0 chr6 79104246 79104316 -103310926 + (CATA)n Simple_repeat Simple_repeat 3 72 0 287 263 61 35 chr6 79106246 79106325 -103308917 - L2 LINE L2 0 3272 3188 252 0 0 0 chr6 79106325 79106353 -103308889 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 287 263 61 35 chr6 79106353 79106387 -103308855 - L2 LINE L2 -84 3188 3156 22 70 0 0 chr6 79107074 79107117 -103308125 + AT_rich Low_complexity Low_complexity 1 43 0 216 276 105 13 chr6 79108111 79108189 -103307053 + L2 LINE L2 3184 3268 -4 21 0 0 0 chr6 79108271 79108292 -103306950 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr6 79108325 79108362 -103306880 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 79109371 79109392 -103305850 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 79110492 79110516 -103304726 + AT_rich Low_complexity Low_complexity 1 24 0 49 32 0 0 chr6 79112105 79112168 -103303074 + AT_rich Low_complexity Low_complexity 1 63 0 31 44 0 0 chr6 79112618 79112663 -103302579 + AT_rich Low_complexity Low_complexity 1 45 0 254 299 155 10 chr6 79112762 79112859 -103302383 - MIR SINE MIR -63 145 35 27 0 0 0 chr6 79113093 79113120 -103302122 + AT_rich Low_complexity Low_complexity 1 27 0 579 230 9 0 chr6 79113986 79114099 -103301143 + MER81 DNA DNA 1 114 0 470 282 68 47 chr6 79114195 79114429 -103300813 - MIR SINE MIR -16 246 8 279 290 118 43 chr6 79114466 79114652 -103300590 - MIR SINE MIR -49 213 14 25 51 0 0 chr6 79117242 79117281 -103297961 + AT_rich Low_complexity Low_complexity 1 39 0 868 176 7 7 chr6 79117380 79117533 -103297709 - MER2 DNA MER2_type 0 345 193 980 170 26 26 chr6 79117592 79117786 -103297456 - MER2 DNA MER2_type -136 209 16 277 372 61 46 chr6 79117987 79118183 -103297059 - MIR3 SINE MIR -5 203 5 35 24 0 0 chr6 79118746 79118788 -103296454 + AT_rich Low_complexity Low_complexity 1 42 0 41 21 0 0 chr6 79118977 79119025 -103296217 + AT_rich Low_complexity Low_complexity 1 48 0 28 29 0 0 chr6 79120239 79120274 -103294968 + AT_rich Low_complexity Low_complexity 1 35 0 243 125 0 0 chr6 79122177 79122217 -103293025 + (CA)n Simple_repeat Simple_repeat 1 40 0 2042 93 45 3 chr6 79123422 79123711 -103291531 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 79124517 79124539 -103290703 + AT_rich Low_complexity Low_complexity 1 22 0 1664 142 4 4 chr6 79127668 79127928 -103287314 + AluSx SINE Alu 35 294 -18 26 64 0 0 chr6 79128347 79128394 -103286848 + AT_rich Low_complexity Low_complexity 1 47 0 1258 147 34 46 chr6 79128826 79129064 -103286178 - MER46A DNA MER2_type 0 236 2 530 198 138 0 chr6 79129899 79130015 -103285227 - MER58B DNA MER1_type -18 323 192 216 86 0 0 chr6 79131636 79131671 -103283571 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr6 79133439 79133478 -103281764 + AT_rich Low_complexity Low_complexity 1 39 0 539 275 98 21 chr6 79133717 79134154 -103281088 - L1MEd LINE L1 -3529 2600 2130 495 251 35 59 chr6 79134738 79134941 -103280301 - L1MEd LINE L1 -5914 205 8 26 0 0 0 chr6 79134961 79134987 -103280255 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr6 79135002 79135030 -103280212 + AT_rich Low_complexity Low_complexity 1 28 0 205 297 11 44 chr6 79135781 79135872 -103279370 + MIR SINE MIR 129 216 -46 921 201 56 47 chr6 79137568 79137802 -103277440 - MER106A DNA MER1_type 0 236 1 256 298 38 0 chr6 79138532 79138652 -103276590 + L1ME LINE L1 196 319 -5886 411 291 156 46 chr6 79139380 79139973 -103275269 + L1ME LINE L1 1042 1569 -4827 477 0 0 0 chr6 79139973 79140026 -103275216 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 411 291 156 46 chr6 79140026 79140537 -103274705 + L1ME LINE L1 1569 2267 -4129 1017 210 27 27 chr6 79140652 79140871 -103274371 + MER58A DNA MER1_type 6 224 0 546 288 114 23 chr6 79140871 79141222 -103274020 + L1ME LINE L1 3452 3834 -2381 22 0 0 0 chr6 79141391 79141413 -103273829 + AT_rich Low_complexity Low_complexity 1 22 0 508 226 48 30 chr6 79141413 79141581 -103273661 + L1ME LINE L1 4328 4498 -1717 23 0 0 0 chr6 79142425 79142448 -103272794 + AT_rich Low_complexity Low_complexity 1 23 0 395 198 63 27 chr6 79142485 79142596 -103272646 + MER104 DNA Tc2 5 119 -61 1499 193 94 81 chr6 79142635 79143090 -103272152 + MLT1D LTR MaLR 3 463 -42 274 228 0 0 chr6 79143097 79143154 -103272088 + HsTC2 DNA Tc2 1843 1899 0 1870 174 30 18 chr6 79143291 79143688 -103271554 - L1MB7 LINE L1 -358 5826 5425 3673 59 21 2 chr6 79143925 79144402 -103270840 + L1PA7 LINE L1 5666 6151 -3 343 61 0 91 chr6 79144409 79144475 -103270767 + L1MA1 LINE L1 6243 6302 0 21 0 0 0 chr6 79144582 79144603 -103270639 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr6 79144967 79144995 -103270247 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 348 282 8 23 chr6 79145334 79145465 -103269777 - LTR37B LTR ERV1 -143 325 197 1157 265 184 29 chr6 79145713 79146397 -103268845 - L2 LINE L2 -864 2450 1661 22 0 0 0 chr6 79147081 79147103 -103268139 + AT_rich Low_complexity Low_complexity 1 22 0 182 189 0 94 chr6 79147688 79147741 -103267501 + L3 LINE CR1 670 717 -860 2386 41 0 0 chr6 79148353 79148643 -103266599 + L1PA3 LINE L1 5865 6154 -1 22 0 0 0 chr6 79149999 79150021 -103265221 + AT_rich Low_complexity Low_complexity 1 22 0 6535 64 24 12 chr6 79151008 79151939 -103263303 - L1PA7 LINE L1 0 6154 5232 184 333 58 0 chr6 79152533 79152620 -103262622 + MIR3 SINE MIR 110 201 -7 6594 31 1 0 chr6 79153536 79154315 -103260927 - L1PA4 LINE L1 0 6155 5376 2664 35 12 0 chr6 79154315 79154656 -103260586 + L1PA4 LINE L1 5042 5386 -760 562 248 62 0 chr6 79154658 79154787 -103260455 - MIR SINE MIR -111 151 15 360 43 0 0 chr6 79154795 79154841 -103260401 + (GA)n Simple_repeat Simple_repeat 2 47 0 310 309 96 86 chr6 79154876 79155200 -103260042 - L2 LINE L2 -3 3269 2943 10457 27 3 0 chr6 79155231 79157248 -103257994 - L1PA4 LINE L1 -3 6152 4133 279 0 0 0 chr6 79158572 79158603 -103256639 + (TG)n Simple_repeat Simple_repeat 1 31 0 294 143 0 0 chr6 79159413 79159462 -103255780 + (T)n Simple_repeat Simple_repeat 1 49 0 570 149 0 0 chr6 79159469 79159556 -103255686 - AluJ/FLAM SINE Alu -225 87 1 22 0 0 0 chr6 79160863 79160885 -103254357 + AT_rich Low_complexity Low_complexity 1 22 0 395 260 55 16 chr6 79161308 79161435 -103253807 - MIR SINE MIR 0 262 131 22 35 0 0 chr6 79161576 79161605 -103253637 + AT_rich Low_complexity Low_complexity 1 29 0 360 276 60 17 chr6 79162006 79162122 -103253120 + MIR SINE MIR 108 228 -34 1000 228 83 7 chr6 79162585 79162861 -103252381 + MER58B DNA MER1_type 29 325 -16 193 235 112 51 chr6 79163204 79163302 -103251940 + L2 LINE L2 3168 3271 -1 593 203 5 76 chr6 79164143 79164343 -103250899 - MER8 DNA MER2_type 0 239 1 846 187 0 33 chr6 79164523 79164705 -103250537 - L1PB4 LINE L1 -2 6154 5979 29 28 0 0 chr6 79165454 79165490 -103249752 + AT_rich Low_complexity Low_complexity 1 36 0 195 189 0 0 chr6 79167311 79167348 -103247894 - L2 LINE L2 -1 3312 3276 491 273 18 90 chr6 79167357 79167635 -103247607 - MIR SINE MIR 0 262 5 620 165 63 0 chr6 79167873 79168000 -103247242 - MIR SINE MIR -110 152 18 482 270 126 31 chr6 79168257 79168416 -103246826 - MIR SINE MIR -83 179 6 263 326 14 49 chr6 79168650 79168794 -103246448 - MLT1I LTR MaLR -207 202 64 2395 85 19 0 chr6 79168922 79169229 -103246013 - AluSq SINE Alu 0 313 1 421 297 77 24 chr6 79169716 79169882 -103245360 - MIR SINE MIR -30 232 50 2137 103 0 0 chr6 79169882 79170198 -103245044 + AluSx SINE Alu 1 316 0 421 297 77 24 chr6 79170198 79170239 -103245003 - MIR SINE MIR -212 50 13 300 125 0 0 chr6 79170330 79170386 -103244856 - L1MA3 LINE L1 0 6305 6250 23 0 0 0 chr6 79171403 79171426 -103243816 + AT_rich Low_complexity Low_complexity 1 23 0 2181 109 0 3 chr6 79172423 79172743 -103242499 + AluSq SINE Alu 3 321 0 409 307 40 23 chr6 79173439 79173615 -103241627 + MIR3 SINE MIR 29 207 -1 326 245 30 78 chr6 79173890 79174168 -103241074 + Tigger8 DNA MER2_type 4 340 -326 888 175 85 0 chr6 79175003 79175180 -103240062 - LTR47A LTR ERVL 0 452 261 199 157 24 36 chr6 79176571 79176654 -103238588 + (TA)n Simple_repeat Simple_repeat 2 83 0 2366 81 13 0 chr6 79177041 79177349 -103237893 - AluSx SINE Alu 0 312 1 339 151 244 0 chr6 79177351 79177437 -103237805 - MLT1D LTR MaLR -2 503 397 265 144 0 189 chr6 79177503 79177593 -103237649 - MADE1 DNA Mariner -2 78 6 1026 198 140 45 chr6 79177597 79177911 -103237331 - MLT1D LTR MaLR -145 360 17 492 18 0 0 chr6 79177911 79177968 -103237274 + (TATTG)n Simple_repeat Simple_repeat 4 60 0 478 237 66 20 chr6 79178352 79178504 -103236738 - MER69 DNA AcHobo 0 2526 2368 184 231 77 31 chr6 79178757 79178822 -103236420 + MIR3 SINE MIR 1 68 -140 564 292 103 5 chr6 79178822 79179007 -103236235 - L2 LINE L2 0 3313 3111 366 359 55 43 chr6 79179119 79179467 -103235775 - L2 LINE L2 -337 2977 2626 25 0 0 0 chr6 79179562 79179587 -103235655 + AT_rich Low_complexity Low_complexity 1 25 0 1082 287 122 9 chr6 79180558 79180986 -103234256 - LTR16C LTR ERVL -12 479 4 532 226 40 8 chr6 79181495 79181619 -103233623 + MER94 DNA DNA 6 133 -1 306 293 140 13 chr6 79181898 79182055 -103233187 + MIR SINE MIR 78 254 -8 236 267 0 0 chr6 79182610 79182670 -103232572 + GA-rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr6 79183830 79183855 -103231387 + AT_rich Low_complexity Low_complexity 1 25 0 2004 50 50 23 chr6 79184237 79184497 -103230745 - AluY SINE Alu -3 308 42 1330 230 13 58 chr6 79185320 79185715 -103229527 - MLT2C1 LTR ERVL -4 393 17 254 320 131 29 chr6 79186315 79186490 -103228752 + L2 LINE L2 2927 3119 -153 266 164 0 16 chr6 79187069 79187130 -103228112 + (TG)n Simple_repeat Simple_repeat 1 60 0 384 316 18 9 chr6 79187746 79187860 -103227382 + MIR SINE MIR 34 148 -114 2327 96 0 0 chr6 79189854 79190157 -103225085 - AluSc SINE Alu -6 303 1 3522 116 21 23 chr6 79190578 79191106 -103224136 - MER1A DNA MER1_type 0 527 1 1746 163 24 7 chr6 79192416 79192711 -103222531 + AluSg SINE Alu 1 300 -10 1421 274 146 43 chr6 79192916 79193445 -103221797 - MER115 DNA AcHobo -22 671 89 2073 128 0 29 chr6 79194495 79194808 -103220434 + AluSx SINE Alu 4 307 -5 945 212 47 9 chr6 79195596 79195808 -103219434 - MIR SINE MIR -30 232 13 3505 53 2 0 chr6 79195911 79196342 -103218900 + L1PA6 LINE L1 5711 6142 -12 819 138 0 39 chr6 79196646 79196776 -103218466 - FLAM_C SINE Alu -8 125 1 1725 198 10 45 chr6 79196947 79197351 -103217891 - MLT1B LTR MaLR 0 390 1 194 281 211 18 chr6 79199213 79199327 -103215915 + L2 LINE L2 3136 3271 -1 1579 160 0 58 chr6 79199436 79199711 -103215531 + AluJo SINE Alu 1 259 -53 234 81 54 0 chr6 79199746 79199783 -103215459 + Alu SINE Alu 272 310 -10 24 0 0 0 chr6 79199817 79199841 -103215401 + AT_rich Low_complexity Low_complexity 1 24 0 741 355 78 22 chr6 79200107 79200738 -103214504 + L2 LINE L2 1634 2299 -1015 318 250 11 43 chr6 79200749 79200841 -103214401 + L2 LINE L2 3225 3313 0 234 306 56 14 chr6 79201493 79201565 -103213677 + MIR SINE MIR 31 105 -103 554 225 25 0 chr6 79201568 79201688 -103213554 + L2 LINE L2 3187 3309 -4 408 296 145 60 chr6 79202504 79202672 -103212570 + L2 LINE L2 2969 3121 -192 2426 75 0 3 chr6 79202672 79202978 -103212264 - AluY SINE Alu -6 305 1 408 296 145 60 chr6 79202978 79203127 -103212115 + L2 LINE L2 3121 3313 0 401 294 28 7 chr6 79203636 79203779 -103211463 + L1ME LINE L1 5507 5652 -469 2364 296 97 16 chr6 79203987 79205156 -103210086 - L2 LINE L2 -49 3264 2006 183 80 0 0 chr6 79207288 79207313 -103207929 + (T)n Simple_repeat Simple_repeat 1 25 0 323 295 8 49 chr6 79207975 79208097 -103207145 - L2 LINE L2 -6 3307 3191 1364 248 112 80 chr6 79209249 79209388 -103205854 + HAL1 LINE L1 1357 1490 -1017 2417 53 0 10 chr6 79209388 79209688 -103205554 + AluY SINE Alu 2 298 -13 1364 248 112 80 chr6 79209688 79210542 -103204700 + HAL1 LINE L1 1490 2382 -125 472 292 87 80 chr6 79210870 79211362 -103203880 + L1MEd LINE L1 869 1447 -1043 499 264 65 42 chr6 79211367 79211682 -103203560 + L1M3de LINE L1 897 1320 -4730 564 152 6 76 chr6 79211696 79211854 -103203388 + L1MA4 LINE L1 6152 6298 -2 25 31 0 0 chr6 79211885 79211917 -103203325 + AT_rich Low_complexity Low_complexity 1 32 0 427 284 74 18 chr6 79211969 79212198 -103203044 + L1ME3A LINE L1 3750 3991 -2155 504 288 165 13 chr6 79212291 79212669 -103202573 + L1ME3A LINE L1 5492 5929 -241 2019 135 0 0 chr6 79212675 79212980 -103202262 + AluSx SINE Alu 1 305 0 316 320 74 66 chr6 79212985 79213229 -103202013 + L1ME LINE L1 3373 3618 -2528 446 293 58 71 chr6 79213284 79213718 -103201524 + L1ME LINE L1 5397 5824 -297 279 140 0 0 chr6 79213737 79213787 -103201455 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 30 27 0 0 chr6 79215183 79215220 -103200022 + AT_rich Low_complexity Low_complexity 1 37 0 234 87 29 72 chr6 79215330 79215399 -103199843 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 399 317 93 0 chr6 79215506 79215689 -103199553 - MIR SINE MIR -7 255 56 243 146 0 0 chr6 79216928 79216969 -103198273 + (CA)n Simple_repeat Simple_repeat 1 41 0 223 192 41 14 chr6 79217069 79217142 -103198100 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 22 0 0 0 chr6 79218099 79218121 -103197121 + AT_rich Low_complexity Low_complexity 1 22 0 564 174 214 34 chr6 79220205 79220383 -103194859 - MER6B DNA MER2_type 0 210 1 319 288 85 23 chr6 79220416 79220593 -103194649 - MIR SINE MIR -73 189 2 425 88 0 15 chr6 79220794 79220862 -103194380 + (TC)n Simple_repeat Simple_repeat 1 67 0 2643 115 32 2 chr6 79221067 79221533 -103193709 + MER1A DNA MER1_type 1 529 0 495 272 107 22 chr6 79221650 79221874 -103193368 - MLT1K LTR MaLR -311 277 35 441 256 8 16 chr6 79222165 79222290 -103192952 + MIR SINE MIR 131 254 -8 3199 148 13 9 chr6 79223537 79224076 -103191166 - L1PA16 LINE L1 -1 6165 5625 1453 209 88 20 chr6 79224085 79224246 -103190996 - Charlie4a DNA MER1_type -1456 505 356 1641 153 9 59 chr6 79224246 79224566 -103190676 + AluJb SINE Alu 1 304 -8 1453 209 88 20 chr6 79224566 79224849 -103190393 - Charlie4a DNA MER1_type -1605 356 31 2061 171 70 0 chr6 79225425 79225822 -103189420 + MSTB LTR MaLR 1 425 -1 215 302 241 9 chr6 79226698 79226814 -103188428 - MER5A DNA MER1_type 0 189 47 781 241 11 0 chr6 79226814 79226988 -103188254 - MER45A DNA AcHobo 0 178 3 1553 196 40 3 chr6 79227487 79227783 -103187459 - AluJo SINE Alu -5 307 1 970 231 92 83 chr6 79228907 79229362 -103185880 - MLT1C LTR MaLR -8 459 1 593 241 146 0 chr6 79229989 79230147 -103185095 + MER5A DNA MER1_type 9 189 0 200 216 0 20 chr6 79230524 79230575 -103184667 + A-rich Low_complexity Low_complexity 3 52 0 318 237 66 0 chr6 79231486 79231562 -103183680 + L2 LINE L2 3229 3309 -4 418 284 31 43 chr6 79231730 79231892 -103183350 - MIR SINE MIR -102 160 1 404 345 38 25 chr6 79232047 79232285 -103182957 + MIR SINE MIR 9 249 -13 935 124 30 24 chr6 79232440 79232609 -103182633 - HSMAR2 DNA Mariner -1119 183 14 437 83 0 14 chr6 79234083 79234155 -103181087 + (TG)n Simple_repeat Simple_repeat 2 72 0 1933 148 3 0 chr6 79234183 79234467 -103180775 - AluSq SINE Alu -22 291 7 219 248 38 19 chr6 79234768 79234873 -103180369 + CT-rich Low_complexity Low_complexity 2 108 0 25 31 0 0 chr6 79235074 79235106 -103180136 + AT_rich Low_complexity Low_complexity 1 32 0 197 306 75 60 chr6 79236455 79236589 -103178653 + L2 LINE L2 1773 1908 -1406 228 304 144 47 chr6 79236611 79236868 -103178374 + L2 LINE L2 2066 2347 -967 326 175 0 125 chr6 79236969 79237049 -103178193 - MER20 DNA MER1_type -140 79 10 187 253 11 77 chr6 79237572 79237663 -103177579 + L3b LINE CR1 1130 1214 -369 418 282 9 13 chr6 79237758 79237899 -103177343 - MER5A DNA MER1_type -34 146 6 205 336 64 46 chr6 79238566 79238849 -103176393 - L2 LINE L2 -340 2974 2687 1932 93 31 7 chr6 79239302 79239593 -103175649 + L1MA1 LINE L1 6004 6301 -1 29 0 0 0 chr6 79239593 79239622 -103175620 + AT_rich Low_complexity Low_complexity 1 29 0 288 53 0 0 chr6 79239942 79239980 -103175262 + (GA)n Simple_repeat Simple_repeat 2 39 0 840 294 59 35 chr6 79240227 79240632 -103174610 + L1MC4a LINE L1 5511 5925 -1883 3885 127 27 6 chr6 79240765 79241397 -103173845 - L1PA16 LINE L1 0 6166 5522 248 284 0 0 chr6 79241915 79241982 -103173260 - MLT1J1 LTR MaLR -127 319 253 291 54 0 0 chr6 79242082 79242119 -103173123 + (CA)n Simple_repeat Simple_repeat 1 37 0 1681 171 50 64 chr6 79243897 79244335 -103170907 - MSTB1 LTR MaLR 0 432 1 335 154 51 39 chr6 79244349 79244427 -103170815 - L1MC5 LINE L1 -36 7925 7847 431 212 53 26 chr6 79244501 79244614 -103170628 + LTR52 LTR ERVL 15 130 -291 589 269 87 14 chr6 79244679 79244898 -103170344 - LTR52 LTR ERVL -6 415 181 1398 269 31 15 chr6 79245730 79246361 -103168881 - L1M1 LINE L1 -4291 2091 1373 577 200 50 0 chr6 79246419 79246539 -103168703 - MER63 DNA MER1_type -307 755 4 532 289 184 5 chr6 79246762 79246980 -103168262 + MIR SINE MIR 2 258 -4 229 265 15 15 chr6 79246981 79247049 -103168193 + MIR SINE MIR 185 252 -10 25 0 0 0 chr6 79247513 79247538 -103167704 + AT_rich Low_complexity Low_complexity 1 25 0 5563 50 0 0 chr6 79248777 79249454 -103165788 - L1PA5 LINE L1 -2 6152 5476 1643 52 22 9 chr6 79249462 79249692 -103165550 - L1PA4 LINE L1 -3 6152 5920 2611 106 17 6 chr6 79251262 79251622 -103163620 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr6 79252726 79252754 -103162488 + AT_rich Low_complexity Low_complexity 1 28 0 827 217 0 6 chr6 79252764 79252921 -103162321 - FRAM SINE Alu -23 153 1 807 156 0 0 chr6 79253021 79253143 -103162099 - FLAM_C SINE Alu -20 123 2 223 331 74 25 chr6 79253268 79253389 -103161853 + MIR3 SINE MIR 60 186 -22 2067 93 36 10 chr6 79253710 79254011 -103161231 + AluSc SINE Alu 1 309 0 205 184 0 0 chr6 79254615 79254653 -103160589 + CT-rich Low_complexity Low_complexity 3 40 0 180 302 0 0 chr6 79255111 79255174 -103160068 + L3b LINE CR1 1303 1365 -218 418 314 20 0 chr6 79255552 79255705 -103159537 + L1M2 LINE L1 11 166 -6683 4035 197 8 16 chr6 79256664 79257517 -103157725 + L1 LINE L1 3631 4476 -1670 2887 174 19 74 chr6 79257493 79257756 -103157486 + L1PA16 LINE L1 5517 5793 -373 * 432 0 0 0 chr6 79257756 79257804 -103157438 + (CA)n Simple_repeat Simple_repeat 2 49 0 2887 174 19 74 chr6 79257804 79258226 -103157016 + L1PA16 LINE L1 5793 6164 -2 656 284 78 12 chr6 79258727 79258970 -103156272 + L2 LINE L2 3055 3313 0 2160 93 3 17 chr6 79259076 79259376 -103155866 + AluSg1 SINE Alu 7 302 -7 2143 116 0 0 chr6 79259701 79259993 -103155249 + AluSg SINE Alu 1 292 -18 4934 150 111 1 chr6 79260037 79261084 -103154158 - L1MA6 LINE L1 -1 6299 5151 231 274 94 0 chr6 79261279 79261385 -103153857 - L1ME3 LINE L1 -88 6074 5959 1053 267 118 17 chr6 79261453 79262021 -103153221 - L1ME3A LINE L1 -219 5945 5313 545 296 61 7 chr6 79262033 79262327 -103152915 - L1ME3A LINE L1 -875 5271 4962 640 177 8 0 chr6 79262334 79262458 -103152784 + L1MA8 LINE L1 6141 6265 -26 784 256 47 3 chr6 79262476 79262793 -103152449 - L1ME3A LINE L1 -3146 3000 2670 392 299 49 27 chr6 79263584 79263768 -103151474 + MIR SINE MIR 58 245 -17 892 252 48 9 chr6 79264454 79264684 -103150558 - MIR SINE MIR 0 262 24 224 200 0 0 chr6 79265427 79265467 -103149775 - L2 LINE L2 -9 3304 3265 937 231 150 90 chr6 79266811 79267365 -103147877 - MLT1G1 LTR MaLR -8 587 1 222 310 241 0 chr6 79267633 79267749 -103147493 + MIR3 SINE MIR 58 201 -7 338 154 0 46 chr6 79269631 79269696 -103145546 + AluJ/FRAM SINE Alu 232 293 -9 21 0 0 0 chr6 79270074 79270095 -103145147 + AT_rich Low_complexity Low_complexity 1 21 0 207 186 0 0 chr6 79270329 79270372 -103144870 + (CTCA)n Simple_repeat Simple_repeat 4 46 0 199 225 0 0 chr6 79272079 79272119 -103143123 - L2 LINE L2 -575 2739 2700 30947 51 1 2 chr6 79273165 79277060 -103138182 + L1PA3 LINE L1 3 3894 -2252 20875 43 1 0 chr6 79277162 79279767 -103135475 + L1P LINE L1 2652 5259 -887 12248 37 3 1 chr6 79279867 79282076 -103133166 + L1PA3 LINE L1 3922 6155 0 1613 204 36 0 chr6 79282091 79282420 -103132822 + MER58B DNA MER1_type 1 341 0 286 280 102 42 chr6 79284704 79284822 -103130420 + MIR SINE MIR 81 205 -57 322 259 35 26 chr6 79284957 79285073 -103130169 - MIR SINE MIR -14 248 132 420 209 108 23 chr6 79286089 79286218 -103129024 + ORSL DNA AcHobo 1 140 -135 527 179 0 0 chr6 79286220 79286304 -103128938 + FRAM SINE Alu 63 146 -30 522 152 24 0 chr6 79286309 79286434 -103128808 + (TA)n Simple_repeat Simple_repeat 2 129 0 200 306 0 0 chr6 79286531 79286580 -103128662 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 5588 167 16 14 chr6 79286581 79286831 -103128411 + L1MA4 LINE L1 4738 4986 -1314 1740 160 44 3 chr6 79286831 79287125 -103128117 + AluSx SINE Alu 1 306 -6 5588 167 16 14 chr6 79287125 79288431 -103126811 + L1MA4 LINE L1 4986 6300 0 690 168 54 30 chr6 79288463 79288630 -103126612 - L1MB7 LINE L1 -76 6108 5938 206 306 42 56 chr6 79289508 79289580 -103125662 + L2 LINE L2 3188 3258 -14 1910 112 14 0 chr6 79289623 79289919 -103125323 + L1MA2 LINE L1 5747 6046 -258 486 313 14 7 chr6 79290371 79290518 -103124724 + MIR3 SINE MIR 57 204 -4 579 270 48 62 chr6 79291443 79291700 -103123542 - MIR SINE MIR 0 262 2 360 296 37 15 chr6 79291722 79291857 -103123385 + MIR3 SINE MIR 42 179 -29 314 250 71 61 chr6 79293948 79294160 -103121082 + MER112 DNA MER1_type 8 221 -39 207 0 0 0 chr6 79295495 79295518 -103119724 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2060 112 0 4 chr6 79295876 79296283 -103118959 + AluSx SINE Alu 5 410 0 4788 41 0 0 chr6 79296383 79296967 -103118275 - L1P LINE L1 -918 5228 4645 10938 29 4 1 chr6 79296967 79298289 -103116953 + L1P LINE L1 3312 4636 -1510 25 0 0 0 chr6 79298532 79298557 -103116685 + AT_rich Low_complexity Low_complexity 1 25 0 392 332 60 41 chr6 79298750 79299066 -103116176 + MLT1K LTR MaLR 81 402 -186 23 33 0 0 chr6 79300560 79300590 -103114652 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr6 79301580 79301600 -103113642 + (TG)n Simple_repeat Simple_repeat 2 21 0 400 111 25 0 chr6 79301612 79301693 -103113549 + (TA)n Simple_repeat Simple_repeat 2 84 0 582 238 62 42 chr6 79302881 79303121 -103112121 + L1ME3A LINE L1 5616 5860 -310 2046 29 4 20 chr6 79303152 79303398 -103111844 + AluY SINE Alu 13 254 -57 826 61 0 35 chr6 79303398 79303546 -103111696 + AluY SINE Alu 170 313 0 249 186 0 51 chr6 79303557 79303616 -103111626 + L1ME3A LINE L1 5891 5946 -224 198 330 133 70 chr6 79303727 79304072 -103111170 + L2 LINE L2 2310 2676 -638 2007 101 18 0 chr6 79304079 79304355 -103110887 - MLT2A2 LTR ERVL 0 453 173 1086 312 51 8 chr6 79304801 79305195 -103110047 - L3 LINE CR1 -532 1045 635 719 225 12 17 chr6 79305424 79305597 -103109645 + MER96 DNA MER1_type 2 173 -2 24 32 0 0 chr6 79306827 79306858 -103108384 + AT_rich Low_complexity Low_complexity 1 31 0 330 303 40 30 chr6 79306990 79307089 -103108153 - L2 LINE L2 -32 3240 3141 2075 130 13 74 chr6 79307181 79307253 -103107989 - THE1C LTR MaLR -2 373 298 1964 125 3 28 chr6 79307253 79307568 -103107674 - AluSx SINE Alu 0 308 1 2075 130 13 74 chr6 79307568 79307884 -103107358 - THE1C LTR MaLR -77 298 7 309 345 63 63 chr6 79308065 79308256 -103106986 + HAL1 LINE L1 480 670 -1837 1946 138 0 32 chr6 79308490 79308802 -103106440 + AluSx SINE Alu 1 302 -10 502 301 116 53 chr6 79308829 79309397 -103105845 + HAL1 LINE L1 994 1597 -910 333 269 11 11 chr6 79309465 79309558 -103105684 + HAL1 LINE L1 1798 1890 -617 260 208 258 0 chr6 79309590 79309710 -103105532 + L1ME LINE L1 5745 5895 -226 230 262 16 0 chr6 79309738 79309799 -103105443 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 624 358 82 12 chr6 79309978 79310562 -103104680 + L2 LINE L2 1787 2411 -903 221 351 14 0 chr6 79311248 79311322 -103103920 + L2 LINE L2 3239 3313 0 413 292 51 11 chr6 79312324 79312502 -103102740 + MIR SINE MIR 75 259 -3 2851 232 61 51 chr6 79312582 79313001 -103102241 - L1MD2 LINE L1 -19 6734 6321 2290 97 0 0 chr6 79313001 79313310 -103101932 + AluSc SINE Alu 1 309 0 2851 232 61 51 chr6 79313310 79313551 -103101691 - L1MD2 LINE L1 -432 6321 6084 2259 68 0 4 chr6 79313551 79313856 -103101386 - AluY SINE Alu 0 304 1 2851 232 61 51 chr6 79313856 79314097 -103101145 - L1MD2 LINE L1 -669 6084 5822 6872 229 97 33 chr6 79314116 79314521 -103100721 - L1MD2 LINE L1 -2826 3714 3337 2173 101 3 0 chr6 79314521 79314809 -103100433 - AluSx SINE Alu -23 289 1 6872 229 97 33 chr6 79314809 79317897 -103097345 - L1MD2 LINE L1 -3203 3337 1 902 173 5 119 chr6 79317880 79318000 -103097242 - L1MC/D LINE L1 -743 5403 5367 * 1821 174 7 0 chr6 79318000 79318298 -103096944 - AluJo SINE Alu 0 312 13 902 173 5 119 chr6 79318298 79318499 -103096743 - L1MC/D LINE L1 -779 5367 5145 480 264 108 6 chr6 79318659 79318826 -103096416 + MIR SINE MIR 21 204 -58 336 317 45 22 chr6 79318879 79319103 -103096139 - L1MC/D LINE L1 -1536 4610 4382 297 167 33 22 chr6 79320066 79320156 -103095086 - Charlie5 DNA MER1_type -61 2551 2461 2096 112 7 10 chr6 79320894 79321188 -103094054 - AluSx SINE Alu -18 294 2 25 90 0 0 chr6 79321568 79321635 -103093607 + AT_rich Low_complexity Low_complexity 1 67 0 390 272 11 0 chr6 79321675 79321767 -103093475 + MER2 DNA MER2_type 2 94 -251 236 311 27 54 chr6 79321768 79321916 -103093326 + HAL1 LINE L1 580 723 -1784 273 128 0 0 chr6 79322026 79322073 -103093169 + (CA)n Simple_repeat Simple_repeat 2 48 0 2275 183 36 63 chr6 79324147 79324177 -103091065 - MLT2B3 LTR ERVL -11 543 514 522 0 0 0 chr6 79324177 79324235 -103091007 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 2275 183 36 63 chr6 79324235 79324762 -103090480 - MLT2B3 LTR ERVL -40 514 1 225 0 0 0 chr6 79325027 79325052 -103090190 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1156 330 144 22 chr6 79326580 79327304 -103087938 - L3 LINE CR1 -202 1375 564 2055 153 0 3 chr6 79328983 79329291 -103085951 + AluSx SINE Alu 1 307 -5 217 341 147 9 chr6 79329839 79330050 -103085192 + MIR SINE MIR 17 256 -6 2091 143 0 0 chr6 79333126 79333607 -103081635 + AluSx SINE Alu 1 481 0 273 267 67 13 chr6 79334071 79334146 -103081096 + L2 LINE L2 3234 3312 -1 21 0 0 0 chr6 79334146 79334167 -103081075 + AT_rich Low_complexity Low_complexity 1 21 0 339 305 109 96 chr6 79334349 79334588 -103080654 + L2 LINE L2 3025 3266 -6 273 272 58 19 chr6 79337307 79337410 -103077832 - MIR SINE MIR 0 262 156 773 256 95 21 chr6 79337768 79338104 -103077138 - L1MC/D LINE L1 -2605 3541 3181 753 220 93 127 chr6 79338111 79338466 -103076776 - MSTD LTR MaLR -53 343 1 1473 210 7 0 chr6 79338466 79338757 -103076485 - L1ME LINE L1 -560 5606 5314 1545 177 37 9 chr6 79338768 79339095 -103076147 - L1MA5 LINE L1 -2 7319 6984 3600 163 24 17 chr6 79339599 79339837 -103075405 - L1MA5 LINE L1 -334 6987 6752 2240 115 7 0 chr6 79339837 79340142 -103075100 - AluSx SINE Alu -5 307 1 3600 163 24 17 chr6 79340142 79340802 -103074440 - L1MA5 LINE L1 -569 6752 6082 9988 203 75 49 chr6 79340826 79341671 -103073571 - L1MA5 LINE L1 -4115 3053 2232 4784 154 8 8 chr6 79341671 79342648 -103072594 - L1PA16 LINE L1 -9 6157 5157 9988 203 75 49 chr6 79342648 79344796 -103070446 - L1MA5 LINE L1 -4936 2232 3 1757 234 52 3 chr6 79344798 79345375 -103069867 - L1M4 LINE L1 -2946 3200 2596 10515 142 14 1 chr6 79345383 79347036 -103068206 + Tigger1 DNA MER2_type 743 2418 0 1953 142 156 11 chr6 79349647 79350013 -103065229 + MSTA LTR MaLR 2 420 -8 326 191 18 47 chr6 79350083 79350204 -103065038 + L1MC4 LINE L1 1995 6983 -1339 621 103 48 0 chr6 79350204 79350330 -103064912 + (TA)n Simple_repeat Simple_repeat 1 132 0 248 231 19 0 chr6 79350330 79350382 -103064860 + (CA)n Simple_repeat Simple_repeat 1 53 0 2019 123 21 0 chr6 79350882 79351166 -103064076 - AluSq SINE Alu -22 291 2 295 319 80 29 chr6 79351770 79351908 -103063334 - MIR3 SINE MIR -5 203 59 1678 92 0 0 chr6 79351957 79352175 -103063067 - AluY SINE Alu 0 311 94 431 51 0 0 chr6 79352175 79352234 -103063008 - AluY SINE Alu -251 59 1 799 181 29 6 chr6 79352899 79353070 -103062172 + MER53 DNA DNA 3 177 -12 194 0 39 0 chr6 79353076 79353102 -103062140 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1909 106 51 18 chr6 79353105 79353255 -103061987 - AluSp SINE Alu -29 284 119 273 29 0 0 chr6 79353255 79353289 -103061953 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1909 106 51 18 chr6 79353289 79353412 -103061830 - AluSp SINE Alu -194 119 2 1803 153 38 3 chr6 79353413 79353701 -103061541 - AluSx SINE Alu -14 298 1 912 255 39 0 chr6 79353909 79354117 -103061125 - MER58A DNA MER1_type -8 216 1 28 61 0 0 chr6 79354413 79354462 -103060780 + AT_rich Low_complexity Low_complexity 1 49 0 714 258 74 4 chr6 79355689 79355933 -103059309 - MIR SINE MIR -1 261 1 284 283 11 22 chr6 79356110 79356202 -103059040 + 7SK RNA RNA 7 97 -96 634 290 6 22 chr6 79356312 79356495 -103058747 + MER5A DNA MER1_type 3 182 -7 21 0 0 0 chr6 79357385 79357406 -103057836 + AT_rich Low_complexity Low_complexity 1 21 0 397 349 11 27 chr6 79359021 79359312 -103055930 + L3 LINE CR1 483 822 -755 358 301 139 60 chr6 79359346 79359662 -103055580 + L3 LINE CR1 960 1300 -277 222 37 0 0 chr6 79359831 79359858 -103055384 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr6 79359889 79359918 -103055324 + AT_rich Low_complexity Low_complexity 1 29 0 2038 145 33 138 chr6 79360030 79360603 -103054639 + MER67D LTR ERV1 1 513 -1 235 91 55 55 chr6 79361056 79361111 -103054131 + LTR66 LTR ERVL 384 438 -172 450 36 0 0 chr6 79361175 79361231 -103054011 + (CA)n Simple_repeat Simple_repeat 1 56 0 355 354 163 0 chr6 79361318 79361496 -103053746 - MIR SINE MIR -37 225 19 424 244 10 158 chr6 79361507 79361716 -103053526 - MER5B DNA MER1_type 0 178 1 2935 164 16 2 chr6 79361946 79362451 -103052791 + MER41E LTR ERV1 1 512 0 21 36 0 0 chr6 79363522 79363550 -103051692 + AT_rich Low_complexity Low_complexity 1 28 0 396 353 72 34 chr6 79365315 79365550 -103049692 + MIR SINE MIR 1 244 -18 2332 49 39 33 chr6 79366404 79366710 -103048532 - AluY SINE Alu -3 308 1 1965 139 7 0 chr6 79366710 79367012 -103048230 - AluSq SINE Alu -7 306 3 22 35 0 0 chr6 79368011 79368040 -103047202 + AT_rich Low_complexity Low_complexity 1 29 0 4414 244 83 51 chr6 79368219 79368794 -103046448 + L1MC1 LINE L1 2178 2733 -3482 1447 160 0 0 chr6 79368794 79369032 -103046210 + L1PB4 LINE L1 5919 6156 0 4414 244 83 51 chr6 79369032 79370720 -103044522 + L1MC1 LINE L1 2733 4472 -1743 1092 208 90 33 chr6 79370737 79371069 -103044173 + L1MC1 LINE L1 4776 5126 -1089 42930 31 21 1 chr6 79371071 79377101 -103038141 + L1PA2 LINE L1 3 6155 0 5610 167 42 8 chr6 79377101 79378064 -103037178 + L1MC1 LINE L1 5109 6123 -279 2130 179 51 51 chr6 79378064 79378550 -103036692 + MER66B LTR ERV1 1 486 0 5610 167 42 8 chr6 79378550 79378827 -103036415 + L1MC1 LINE L1 6123 6389 -13 2177 133 0 3 chr6 79378950 79379258 -103035984 + AluSx SINE Alu 5 311 -1 720 54 0 0 chr6 79382047 79382140 -103033102 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 11609 84 9 1 chr6 79382154 79384526 -103030716 - L1PA7 LINE L1 0 6154 3769 724 292 42 4 chr6 79386207 79386447 -103028795 - L1ME LINE L1 -617 5549 5301 389 229 104 40 chr6 79386470 79386742 -103028500 - L1ME LINE L1 -692 5547 5266 747 164 25 0 chr6 79386799 79386921 -103028321 - FLAM_C SINE Alu -18 125 1 2302 96 0 3 chr6 79387048 79387349 -103027893 + AluSc SINE Alu 1 300 -9 289 273 64 37 chr6 79387535 79387722 -103027520 - L1ME LINE L1 -4599 1797 1606 1326 205 39 65 chr6 79387904 79387967 -103027275 - L1MD2 LINE L1 -1 6358 6295 2187 106 3 3 chr6 79387967 79388293 -103026949 + AluSc SINE Alu 1 309 0 1314 165 95 42 chr6 79388302 79388587 -103026655 + AluJo SINE Alu 1 300 -2 1326 205 39 65 chr6 79388587 79388887 -103026355 - L1MD2 LINE L1 -72 6287 5974 457 287 32 13 chr6 79388982 79389139 -103026103 - L1ME LINE L1 -5025 1180 1021 1979 147 0 3 chr6 79389215 79389528 -103025714 - AluSx SINE Alu 0 312 1 301 300 62 12 chr6 79389808 79389968 -103025274 - L1ME LINE L1 -5892 313 146 1072 249 80 69 chr6 79391581 79392362 -103022880 - L1ME3A LINE L1 -208 6031 5218 1561 270 98 86 chr6 79392621 79393776 -103021466 - L1ME3A LINE L1 -1377 4838 3698 1697 102 27 16 chr6 79393776 79394032 -103021210 - L1PA8A LINE L1 0 6131 5873 1561 270 98 86 chr6 79394032 79395284 -103019958 - L1ME3A LINE L1 -2517 3698 2403 1747 128 56 36 chr6 79395301 79395606 -103019636 - AluSx SINE Alu -1 311 1 2546 147 14 0 chr6 79395606 79396021 -103019221 - L1PA16 LINE L1 -11 6155 5735 1101 180 107 4 chr6 79396030 79396291 -103018951 + L1P LINE L1 5080 5367 -779 473 156 0 0 chr6 79396971 79397048 -103018194 - MADE1 DNA Mariner 0 80 4 324 285 49 89 chr6 79397131 79397377 -103017865 - L1ME3A LINE L1 -4159 2237 2002 534 315 59 0 chr6 79397484 79397770 -103017472 - L1ME3A LINE L1 -4579 1817 1515 2464 169 29 19 chr6 79397807 79398333 -103016909 - L1MA4 LINE L1 -4 6296 5766 1188 251 50 87 chr6 79398353 79398442 -103016800 + LTR9 LTR ERV1 1 92 -520 2311 81 3 7 chr6 79398442 79398737 -103016505 - AluSp SINE Alu -11 302 9 1188 251 50 87 chr6 79398737 79399190 -103016052 + LTR9 LTR ERV1 92 523 -89 374 240 48 19 chr6 79400652 79400756 -103014486 + LTR19C LTR ERV1 673 779 0 822 65 0 0 chr6 79400756 79400864 -103014378 - L1MA4 LINE L1 -30 6270 6163 421 130 0 14 chr6 79400861 79400930 -103014312 - L1MA4 LINE L1 -506 5785 5718 * 6336 114 11 30 chr6 79400933 79401767 -103013475 - L1MA2 LINE L1 0 7723 6911 1436 189 34 57 chr6 79401767 79402064 -103013178 - AluJb SINE Alu -22 290 1 6336 114 11 30 chr6 79402064 79402261 -103012981 - L1MA2 LINE L1 -812 6911 6712 1363 160 0 27 chr6 79402333 79402595 -103012647 - L1MA2 LINE L1 -1761 5804 5550 * 9804 186 25 8 chr6 79402562 79404323 -103010919 - L1MA2 LINE L1 -5759 1806 16 2817 138 45 9 chr6 79404323 79405039 -103010203 - L1MA4 LINE L1 -562 5738 4990 720 266 73 59 chr6 79405159 79405801 -103009441 - L1MEd LINE L1 -4906 1213 563 490 285 67 11 chr6 79407080 79407259 -103007983 + LTR67 LTR ERVL 357 545 -12 728 261 154 3 chr6 79407524 79407823 -103007419 - L1M4 LINE L1 -3569 2577 2234 288 309 104 55 chr6 79407932 79408298 -103006944 + MLT1J LTR MaLR 110 493 -18 2491 52 7 3 chr6 79408301 79408609 -103006633 - AluY SINE Alu -2 309 1 514 271 41 46 chr6 79408855 79409073 -103006169 + MIR SINE MIR 5 221 -41 230 216 0 20 chr6 79409573 79409624 -103005618 - MIR SINE MIR -109 153 104 992 157 5 85 chr6 79411027 79411250 -103003992 - MER20 DNA MER1_type 0 219 15 1522 155 53 46 chr6 79412166 79412470 -103002772 + AluJo SINE Alu 2 307 -5 2045 108 35 14 chr6 79412827 79413113 -103002129 + AluSg SINE Alu 1 292 -18 491 289 42 37 chr6 79413819 79414009 -103001233 - MIR SINE MIR 0 262 72 25 51 0 0 chr6 79414034 79414073 -103001169 + AT_rich Low_complexity Low_complexity 1 39 0 2480 77 0 3 chr6 79414138 79414449 -103000793 - AluY SINE Alu -1 310 1 2252 77 40 0 chr6 79414976 79415273 -102999969 - AluY SINE Alu -2 309 1 672 327 132 36 chr6 79415960 79416574 -102998668 + L2 LINE L2 1803 2475 -839 225 364 83 44 chr6 79416674 79416926 -102998316 + L2 LINE L2 2686 2927 -345 1998 129 7 0 chr6 79416926 79417204 -102998038 + AluSx SINE Alu 1 280 -32 225 364 83 44 chr6 79417204 79417442 -102997800 + L2 LINE L2 2927 3201 -71 399 272 57 51 chr6 79418188 79418277 -102996965 + MIR SINE MIR 104 197 -65 2063 123 0 7 chr6 79418277 79418590 -102996652 - AluSq SINE Alu 0 311 1 399 272 57 51 chr6 79418590 79418657 -102996585 + MIR SINE MIR 197 262 0 894 143 0 0 chr6 79419778 79419911 -102995331 + FLAM_C SINE Alu 1 133 0 182 290 148 43 chr6 79420537 79420699 -102994543 + MIR3 SINE MIR 4 182 -26 333 293 128 71 chr6 79423195 79423618 -102991624 - L1M2 LINE L1 -5595 1254 808 324 0 0 0 chr6 79424353 79424389 -102990853 + (TG)n Simple_repeat Simple_repeat 2 37 0 233 269 15 0 chr6 79424596 79424663 -102990579 + CT-rich Low_complexity Low_complexity 2 69 0 23 68 0 0 chr6 79426139 79426183 -102989059 + AT_rich Low_complexity Low_complexity 1 44 0 242 392 85 29 chr6 79426674 79426990 -102988252 + L2 LINE L2 2432 2765 -549 257 356 12 38 chr6 79427194 79427354 -102987888 - L2 LINE L2 -203 3069 2914 181 341 65 32 chr6 79427498 79427621 -102987621 - L2 LINE L2 -563 2751 2625 319 376 121 7 chr6 79427731 79428013 -102987229 - L2 LINE L2 -706 2608 2295 277 206 16 16 chr6 79428063 79428126 -102987116 + L2 LINE L2 3250 3312 -1 538 326 54 64 chr6 79428129 79428647 -102986595 - L2 LINE L2 -1028 2286 1774 485 281 81 101 chr6 79428682 79429116 -102986126 + L2 LINE L2 2848 3272 0 336 305 105 0 chr6 79429244 79429349 -102985893 + MIR SINE MIR 30 145 -63 202 314 17 102 chr6 79429490 79429564 -102985678 + L2 LINE L2 2623 2685 -629 2125 136 0 10 chr6 79429564 79429874 -102985368 - AluSx SINE Alu -5 307 1 202 314 17 102 chr6 79429874 79429917 -102985325 + L2 LINE L2 2685 2730 -584 344 304 89 0 chr6 79429934 79430046 -102985196 + L2 LINE L2 3125 3246 -26 249 291 111 60 chr6 79431402 79431519 -102983723 - L2 LINE L2 -16 3256 3134 731 351 119 44 chr6 79431702 79432756 -102982486 - L2 LINE L2 -473 2841 1709 754 281 25 38 chr6 79432817 79433052 -102982190 - MIR SINE MIR -28 234 3 2434 67 0 13 chr6 79433088 79433402 -102981840 - AluY SINE Alu -1 310 1 5363 107 35 0 chr6 79433410 79434345 -102980897 - L1PA16 LINE L1 0 6166 5195 3204 182 19 4 chr6 79434346 79435021 -102980221 + L1PA16 LINE L1 4481 5165 -981 246 279 0 16 chr6 79435111 79435172 -102980070 + L2 LINE L2 3213 3272 0 224 0 0 61 chr6 79435510 79435543 -102979699 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2236 81 3 7 chr6 79435545 79435829 -102979413 - AluSq SINE Alu -30 283 1 1869 166 14 10 chr6 79435996 79436291 -102978951 - AluJb SINE Alu -16 296 1 219 69 0 0 chr6 79436632 79436661 -102978581 + (T)n Simple_repeat Simple_repeat 1 29 0 274 269 87 39 chr6 79441637 79441741 -102973501 - MIR3 SINE MIR -13 195 87 978 69 0 8 chr6 79443283 79443414 -102971828 - L1PA11 LINE L1 -3 6171 6042 5118 129 0 2 chr6 79443414 79444223 -102971019 + L1PA14 LINE L1 5338 6144 -17 1347 141 8 17 chr6 79444439 79444673 -102970569 + MER46A DNA MER2_type 1 232 -4 313 302 68 31 chr6 79444794 79445016 -102970226 + L1MC4a LINE L1 5678 5907 -1901 1721 155 36 0 chr6 79445074 79445377 -102969865 + MER82 DNA MER2_type 27 340 -313 671 239 42 12 chr6 79445376 79445543 -102969699 + MER82 DNA MER2_type 476 647 -6 * 1349 203 9 63 chr6 79446048 79446363 -102968879 + AluJo SINE Alu 1 298 -14 210 171 0 0 chr6 79447190 79447231 -102968011 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 79447314 79447335 -102967907 + AT_rich Low_complexity Low_complexity 1 21 0 553 284 7 0 chr6 79448011 79448152 -102967090 + MER58B DNA MER1_type 172 313 -28 222 136 0 0 chr6 79448400 79448444 -102966798 + (A)n Simple_repeat Simple_repeat 1 44 0 216 175 0 0 chr6 79448459 79448499 -102966743 + GA-rich Low_complexity Low_complexity 1 40 0 269 328 67 0 chr6 79449262 79449442 -102965800 + L1ME LINE L1 5692 5883 -287 21 0 0 0 chr6 79449664 79449685 -102965557 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 79449735 79449756 -102965486 + AT_rich Low_complexity Low_complexity 1 21 0 188 308 108 0 chr6 79451723 79451788 -102963454 - L2 LINE L2 -58 3214 3143 210 299 60 51 chr6 79452148 79452265 -102962977 + L2 LINE L2 3155 3272 0 327 311 0 29 chr6 79453347 79453450 -102961792 + CT-rich Low_complexity Low_complexity 1 100 0 279 280 146 8 chr6 79453725 79453891 -102961351 + MIR3 SINE MIR 14 201 -37 333 250 45 38 chr6 79454865 79454997 -102960245 + MIR SINE MIR 123 255 -7 231 183 0 100 chr6 79455322 79455382 -102959860 - L2 LINE L2 -1 3271 3218 741 51 0 0 chr6 79455980 79456078 -102959164 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 285 361 71 40 chr6 79456516 79456895 -102958347 - L2 LINE L2 -361 2953 2563 1471 205 0 25 chr6 79457919 79458197 -102957045 + AluJo SINE Alu 38 308 -4 2206 108 0 0 chr6 79459233 79459521 -102955721 - AluSx SINE Alu -3 309 22 180 0 0 0 chr6 79459521 79459541 -102955701 + (TA)n Simple_repeat Simple_repeat 2 21 0 2266 113 3 0 chr6 79459541 79459841 -102955401 - AluSx SINE Alu -11 301 1 549 289 58 97 chr6 79460131 79460373 -102954869 + L2 LINE L2 2239 2452 -862 1360 191 20 114 chr6 79460373 79460776 -102954466 - MLT1A1 LTR MaLR 0 365 1 549 289 58 97 chr6 79460776 79461049 -102954193 + L2 LINE L2 2452 2734 -580 542 298 98 19 chr6 79461101 79461316 -102953926 - MIR SINE MIR -4 258 27 21 0 0 0 chr6 79462013 79462034 -102953208 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 79463484 79463506 -102951736 + AT_rich Low_complexity Low_complexity 1 22 0 1886 71 35 0 chr6 79463993 79464248 -102950994 + L1PA7 LINE L1 5887 6150 -4 1972 132 0 7 chr6 79465333 79465662 -102949580 + AluSx SINE Alu 1 327 0 235 231 0 0 chr6 79515887 79515939 -102899303 - MLT-int LTR MaLR -1005 730 679 2935 195 32 70 chr6 79516071 79516819 -102898423 - MLT1A2-int LTR MaLR -651 720 1 866 241 27 77 chr6 79516819 79517118 -102898124 - MLT1A2 LTR MaLR 0 374 91 1074 193 9 9 chr6 79517255 79517478 -102897764 - MLT1-int LTR MaLR -973 398 176 195 186 0 0 chr6 79518055 79518098 -102897144 + (TA)n Simple_repeat Simple_repeat 2 44 0 2501 70 0 0 chr6 79518107 79518406 -102896836 - AluY SINE Alu -12 299 1 1729 140 68 0 chr6 79518409 79518688 -102896554 - AluSx SINE Alu -14 298 1 363 315 12 61 chr6 79518819 79518984 -102896258 + MIR SINE MIR 19 175 -87 356 325 158 10 chr6 79519101 79519399 -102895843 + L3b LINE CR1 1102 1443 -140 21 36 0 0 chr6 79520319 79520347 -102894895 + AT_rich Low_complexity Low_complexity 1 28 0 216 182 0 0 chr6 79520449 79520493 -102894749 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 592 122 196 0 chr6 79520634 79520741 -102894501 + L1PB2 LINE L1 6022 6149 -2 29 28 0 0 chr6 79520741 79520777 -102894465 + AT_rich Low_complexity Low_complexity 1 36 0 1947 138 3 17 chr6 79520781 79521101 -102894141 + AluSx SINE Alu 3 312 0 586 291 148 5 chr6 79524554 79524757 -102890485 - MIR SINE MIR -24 238 7 4465 34 0 0 chr6 79525495 79526024 -102889218 + L1PA3 LINE L1 5624 6152 -3 2115 114 7 17 chr6 79526048 79526347 -102888895 + AluSx SINE Alu 1 296 -16 1791 195 29 18 chr6 79526353 79526737 -102888505 - L1MB7 LINE L1 -58 6126 5739 498 309 124 5 chr6 79527595 79527812 -102887430 - MIR SINE MIR 0 262 20 198 283 17 17 chr6 79528643 79528703 -102886539 + MIR3 SINE MIR 142 201 -7 199 361 10 41 chr6 79529409 79529506 -102885736 - MIR SINE MIR -149 113 20 2487 76 0 0 chr6 79529654 79529957 -102885285 - AluY SINE Alu -8 303 1 476 133 33 11 chr6 79530815 79530905 -102884337 + L1MA5 LINE L1 6205 6296 -4 542 218 34 7 chr6 79530930 79531077 -102884165 - Charlie1 DNA MER1_type -577 2184 2034 366 165 0 0 chr6 79531107 79531186 -102884056 + (TG)n Simple_repeat Simple_repeat 2 80 0 251 297 117 42 chr6 79531870 79532109 -102883133 - L1MC/D LINE L1 -1922 5886 5630 1297 250 13 43 chr6 79532113 79532485 -102882757 - MLT1A2 LTR MaLR -13 361 1 487 241 8 15 chr6 79532578 79532711 -102882531 - L1MC/D LINE L1 -2302 5506 5375 180 0 0 0 chr6 79533008 79533028 -102882214 + (T)n Simple_repeat Simple_repeat 1 20 0 373 356 93 29 chr6 79533661 79533866 -102881376 - L2 LINE L2 -1 3271 3054 2007 80 0 19 chr6 79534126 79534389 -102880853 - AluSc SINE Alu -13 296 39 1633 142 8 0 chr6 79536282 79536522 -102878720 + AluSq SINE Alu 1 242 -71 23 33 0 0 chr6 79537176 79537206 -102878036 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 79539255 79539277 -102875965 + AT_rich Low_complexity Low_complexity 1 22 0 527 324 87 16 chr6 79539357 79539727 -102875515 - L2 LINE L2 -1044 2270 1875 342 255 54 58 chr6 79540742 79540928 -102874314 + MIR3 SINE MIR 2 183 -56 2516 138 46 26 chr6 79541011 79541466 -102873776 - L1PA16 LINE L1 -9 6157 5694 324 227 27 13 chr6 79541834 79541909 -102873333 + Tigger3(Golem) DNA MER2_type 2963 3038 0 221 234 64 0 chr6 79541913 79542007 -102873235 + (TA)n Simple_repeat Simple_repeat 1 100 0 749 203 0 0 chr6 79542070 79542203 -102873039 + FLAM_A SINE Alu 1 133 0 418 283 178 8 chr6 79542315 79542562 -102872680 + L1ME LINE L1 5528 5773 -397 571 143 0 0 chr6 79544083 79544181 -102871061 + L1MA9 LINE L1 6184 6281 -31 850 148 0 0 chr6 79544226 79544348 -102870894 + FLAM_C SINE Alu 3 124 -19 2305 94 3 3 chr6 79544494 79544793 -102870449 - AluSp SINE Alu -14 299 1 1636 155 32 51 chr6 79544933 79545249 -102869993 - AluJo SINE Alu -2 310 1 500 184 96 8 chr6 79546248 79546373 -102868869 + MIR SINE MIR 125 260 -2 253 347 0 13 chr6 79546468 79546543 -102868699 - MIR SINE MIR -170 92 19 466 15 30 15 chr6 79546569 79546636 -102868606 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 621 138 26 52 chr6 79547850 79547988 -102867254 - FRAM SINE Alu 0 40 1 1554 166 74 7 chr6 79548000 79548284 -102866958 - AluJb SINE Alu -9 303 1 224 262 179 36 chr6 79549463 79549631 -102865611 + L2 LINE L2 2848 3039 -233 189 0 0 0 chr6 79549711 79549732 -102865510 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 269 80 0 20 chr6 79551851 79551901 -102863341 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 41 48 0 0 chr6 79552606 79552668 -102862574 + AT_rich Low_complexity Low_complexity 1 62 0 1360 172 122 0 chr6 79554012 79554274 -102860968 - AluJo SINE Alu -8 294 1 1618 173 22 4 chr6 79554829 79555106 -102860136 - AluJb SINE Alu -30 282 1 493 196 21 10 chr6 79555336 79555433 -102859809 - AluS SINE Alu -213 100 3 447 269 26 58 chr6 79555934 79556090 -102859152 - L2 LINE L2 -5 3308 3158 439 239 154 32 chr6 79556096 79556284 -102858958 - L2 LINE L2 0 3313 3103 226 303 0 0 chr6 79556325 79556391 -102858851 - L2 LINE L2 -438 2875 2810 233 118 0 0 chr6 79556507 79556541 -102858701 + MLT1B LTR MaLR 1 34 -356 2958 210 11 48 chr6 79556565 79557356 -102857886 + L1M1 LINE L1 3507 4285 -3280 1935 144 6 18 chr6 79557362 79557688 -102857554 + MLT1B LTR MaLR 67 388 -2 867 286 273 5 chr6 79557712 79558309 -102856933 - L2 LINE L2 -353 2961 2205 445 257 18 0 chr6 79558314 79558423 -102856819 + L2 LINE L2 3191 3301 -12 182 37 37 0 chr6 79558427 79558454 -102856788 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 383 328 56 10 chr6 79558454 79558649 -102856593 - L2 LINE L2 -1126 2188 1985 402 274 26 79 chr6 79559159 79559349 -102855893 + L2 LINE L2 3134 3313 0 322 341 82 8 chr6 79562233 79562634 -102852608 + MARNA DNA Mariner 83 536 -50 301 248 214 34 chr6 79563193 79563310 -102851932 - L2 LINE L2 0 3313 3176 1072 134 21 0 chr6 79563545 79563732 -102851510 + L1MA6 LINE L1 6098 6288 -12 2489 73 7 0 chr6 79564736 79565039 -102850203 - AluSc SINE Alu -4 305 1 197 296 0 0 chr6 79565317 79565371 -102849871 - L2 LINE L2 0 3272 3219 367 349 32 21 chr6 79566964 79567153 -102848089 - MIR3 SINE MIR -3 205 15 583 297 24 73 chr6 79567280 79567526 -102847716 + MIR SINE MIR 17 250 -12 378 234 14 110 chr6 79567786 79567995 -102847247 + MER5A DNA MER1_type 1 189 0 1050 191 30 7 chr6 79568136 79568527 -102846715 + MLT1D LTR MaLR 1 438 -67 360 308 83 8 chr6 79568723 79568843 -102846399 + MIR SINE MIR 13 141 -121 228 111 0 0 chr6 79569062 79569098 -102846144 + (TAA)n Simple_repeat Simple_repeat 3 38 0 1912 147 3 20 chr6 79569139 79569445 -102845797 - AluJb SINE Alu -11 301 1 296 254 77 23 chr6 79569515 79569645 -102845597 + MIR SINE MIR 124 260 -2 206 152 0 22 chr6 79569914 79569960 -102845282 + CT-rich Low_complexity Low_complexity 1 45 0 1889 153 11 26 chr6 79571753 79572105 -102843137 + L1MA7 LINE L1 5938 6284 -7 2329 76 0 10 chr6 79572498 79572802 -102842440 - AluY SINE Alu -10 301 1 616 144 0 51 chr6 79573122 79573240 -102842002 - FRAM SINE Alu -9 167 56 253 309 37 52 chr6 79574321 79574457 -102840785 - MLT1H LTR MaLR -378 171 38 1146 274 58 45 chr6 79575259 79575590 -102839652 - L1MC4a LINE L1 -1857 5951 5626 180 0 0 0 chr6 79575590 79575610 -102839632 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1704 109 77 0 chr6 79575610 79575858 -102839384 - AluSx SINE Alu -45 267 1 1146 274 58 45 chr6 79575858 79576011 -102839231 - L1MC4a LINE L1 -2181 5627 5460 1555 203 14 0 chr6 79576168 79576444 -102838798 + AluJo SINE Alu 1 280 -32 203 136 45 0 chr6 79576446 79576490 -102838752 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 514 319 95 32 chr6 79576708 79577338 -102837904 - L1MC4a LINE L1 -1088 5058 4389 663 266 33 66 chr6 79577656 79577930 -102837312 - MLT1J LTR MaLR -13 498 234 359 150 15 15 chr6 79578040 79578114 -102837128 - MLT1J LTR MaLR -445 66 2 591 329 208 29 chr6 79578839 79579963 -102835279 - L2 LINE L2 -454 2860 1536 247 321 62 80 chr6 79579970 79580344 -102834898 - L2 LINE L2 -1910 1404 1038 1485 56 6 0 chr6 79580602 79580808 -102834434 - AluY SINE Alu 0 308 102 25 31 0 0 chr6 79581052 79581084 -102834158 + AT_rich Low_complexity Low_complexity 1 32 0 193 263 237 0 chr6 79581118 79581194 -102834048 + MIR3 SINE MIR 108 201 -7 267 31 0 0 chr6 79582368 79582400 -102832842 + (CA)n Simple_repeat Simple_repeat 2 33 0 564 245 82 10 chr6 79582449 79582645 -102832597 + L1ME LINE L1 5576 5785 -336 2719 7 0 0 chr6 79582788 79583088 -102832154 - AluYa5 SINE Alu -11 300 1 2041 118 3 14 chr6 79583250 79583547 -102831695 - AluSx SINE Alu -16 296 3 22 56 0 0 chr6 79583591 79583627 -102831615 + AT_rich Low_complexity Low_complexity 1 36 0 227 296 0 0 chr6 79583850 79583921 -102831321 - MER112 DNA MER1_type -8 252 182 228 100 50 0 chr6 79584046 79584086 -102831156 - MER112 DNA MER1_type -141 119 78 2344 79 0 0 chr6 79584163 79584455 -102830787 + AluY SINE Alu 1 292 -19 31 58 0 0 chr6 79584667 79584719 -102830523 + AT_rich Low_complexity Low_complexity 1 52 0 3504 136 17 3 chr6 79584933 79585522 -102829720 + L1MC1 LINE L1 5736 6332 -1 23 54 0 0 chr6 79586101 79586138 -102829104 + AT_rich Low_complexity Low_complexity 1 37 0 729 248 0 0 chr6 79586178 79586339 -102828903 - MLT1E1 LTR MaLR 0 654 494 236 324 144 9 chr6 79586474 79586585 -102828657 - L2 LINE L2 -5 3308 3183 399 268 137 60 chr6 79587734 79587902 -102827340 - MER5A DNA MER1_type 0 189 9 44 46 0 0 chr6 79589571 79589636 -102825606 + AT_rich Low_complexity Low_complexity 1 65 0 26 30 0 0 chr6 79589754 79589787 -102825455 + AT_rich Low_complexity Low_complexity 1 33 0 831 213 88 88 chr6 79590133 79590542 -102824700 - MLT1I LTR MaLR 0 409 1 2352 93 3 0 chr6 79590818 79591128 -102824114 + AluSx SINE Alu 1 311 -1 1333 217 24 96 chr6 79591965 79592467 -102822775 - MLT1C LTR MaLR -1 466 1 1324 206 155 7 chr6 79593357 79593764 -102821478 + Charlie4a DNA MER1_type 41 507 -1 201 39 0 0 chr6 79594468 79594494 -102820748 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 420 302 151 25 chr6 79594640 79594799 -102820443 + MER5A DNA MER1_type 9 187 -2 24 0 0 0 chr6 79596011 79596035 -102819207 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 79596999 79597027 -102818215 + AT_rich Low_complexity Low_complexity 1 28 0 283 267 0 0 chr6 79597825 79597900 -102817342 - MER116 DNA Mariner -5 75 1 21 36 0 0 chr6 79597941 79597969 -102817273 + AT_rich Low_complexity Low_complexity 1 28 0 262 357 53 94 chr6 79598394 79598733 -102816509 - L2 LINE L2 -14 3258 2934 187 356 14 0 chr6 79599006 79599079 -102816163 + MIR3 SINE MIR 135 208 0 22 35 0 0 chr6 79599265 79599294 -102815948 + AT_rich Low_complexity Low_complexity 1 29 0 2664 233 76 31 chr6 79599325 79600189 -102815053 - L1ME1 LINE L1 -79 6882 5983 1843 219 53 19 chr6 79600183 79600708 -102814534 - L1ME1 LINE L1 -1869 5072 4530 * 949 220 9 28 chr6 79600728 79600946 -102814296 + MER20 DNA MER1_type 1 214 -5 2466 216 38 65 chr6 79600970 79602187 -102813055 - L1ME1 LINE L1 -3382 3559 2411 1963 209 48 21 chr6 79602182 79602660 -102812582 - L1ME1 LINE L1 -5908 515 25 * 2194 145 8 8 chr6 79603647 79604012 -102811230 - MER47A DNA MER2_type 0 366 2 192 179 0 0 chr6 79606136 79606175 -102809067 + (CA)n Simple_repeat Simple_repeat 1 39 0 306 73 0 0 chr6 79606737 79606778 -102808464 + (TG)n Simple_repeat Simple_repeat 1 41 0 29 60 0 0 chr6 79607886 79607936 -102807306 + AT_rich Low_complexity Low_complexity 1 50 0 235 284 80 45 chr6 79608620 79608708 -102806534 + MIR SINE MIR 17 95 -113 2133 199 98 2 chr6 79660899 79661340 -102753902 - MLT1D LTR MaLR -4 501 19 21 0 0 0 chr6 79662521 79662542 -102752700 + AT_rich Low_complexity Low_complexity 1 21 0 228 105 0 0 chr6 79662965 79662991 -102752251 + (TC)n Simple_repeat Simple_repeat 1 29 -9 189 0 0 0 chr6 79662991 79663012 -102752230 + (TG)n Simple_repeat Simple_repeat 2 22 0 228 105 0 0 chr6 79663012 79663023 -102752219 + (TC)n Simple_repeat Simple_repeat 28 38 0 221 259 0 93 chr6 79663124 79663232 -102752010 - MIR SINE MIR -41 221 124 181 0 0 65 chr6 79663332 79663363 -102751879 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 418 251 40 99 chr6 79663439 79663662 -102751580 + L2 LINE L2 3074 3283 -30 185 0 40 0 chr6 79664008 79664033 -102751209 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 6819 144 8 26 chr6 79664800 79667112 -102748130 - L1MA5A LINE L1 -12 6285 4019 232 218 23 0 chr6 79667145 79667232 -102748010 + (TA)n Simple_repeat Simple_repeat 2 90 0 202 121 30 0 chr6 79667634 79667667 -102747575 + CT-rich Low_complexity Low_complexity 1 34 0 210 278 0 0 chr6 79667727 79667781 -102747461 - L2 LINE L2 -1 3271 3218 8398 40 8 1 chr6 79668135 79669945 -102745297 + L1PA5 LINE L1 4337 6152 -2 2351 205 26 9 chr6 79669959 79670490 -102744752 + L1P LINE L1 4395 4934 -1212 681 183 28 13 chr6 79670773 79670939 -102744303 + MER20 DNA MER1_type 55 219 0 360 250 34 0 chr6 79671622 79671710 -102743532 + MIR SINE MIR 106 196 -66 432 268 63 21 chr6 79672169 79672359 -102742883 + L1MC4a LINE L1 5729 5926 -1882 264 244 35 12 chr6 79672511 79672597 -102742645 + L1MC4 LINE L1 7929 8016 -26 23 54 0 0 chr6 79673350 79673387 -102741855 + AT_rich Low_complexity Low_complexity 1 37 0 250 366 97 0 chr6 79673570 79673704 -102741538 - MER117 DNA MER1_type -50 147 1 663 291 109 0 chr6 79673968 79674188 -102741054 - MIR SINE MIR -11 251 8 1170 233 41 0 chr6 79674188 79674458 -102740784 - MER63B DNA MER1_type -155 281 1 1304 187 13 4 chr6 79674843 79675078 -102740164 - AluJo SINE Alu -27 285 49 446 324 18 18 chr6 79675745 79675915 -102739327 - MIR SINE MIR -1 261 92 1475 23 0 0 chr6 79676483 79676657 -102738585 - L1PA4 LINE L1 -2 6153 5980 2765 10 0 0 chr6 79677197 79677504 -102737738 + AluY SINE Alu 1 307 -4 218 333 24 24 chr6 79677692 79677776 -102737466 - MER91B DNA MER1_type -11 179 96 1046 242 28 36 chr6 79677790 79678178 -102737064 - L1ME LINE L1 -5229 841 457 1756 184 107 61 chr6 79678190 79678438 -102736804 - L1MA7 LINE L1 -1 6304 6069 247 111 0 0 chr6 79678438 79678474 -102736768 + tRNA-Gly-GGC tRNA tRNA 1 36 -38 1756 184 107 61 chr6 79678474 79678888 -102736354 - L1MA7 LINE L1 -236 6069 5556 497 267 7 22 chr6 79678878 79679013 -102736229 - L1ME LINE L1 -5623 447 315 * 601 253 86 20 chr6 79679033 79679231 -102736011 - L1ME LINE L1 -5854 216 6 194 301 62 68 chr6 79679506 79679682 -102735560 - L3b LINE CR1 -87 1496 1322 21 36 0 0 chr6 79680009 79680037 -102735205 + AT_rich Low_complexity Low_complexity 1 28 0 307 355 16 8 chr6 79680977 79681101 -102734141 - MIR SINE MIR -115 147 23 6291 81 3 0 chr6 79681101 79682149 -102733093 - L1PA7 LINE L1 -587 5567 4516 4120 48 68 12 chr6 79682149 79682702 -102732540 + L1PA7 LINE L1 5564 6152 -2 426 250 135 20 chr6 79684439 79684587 -102730655 - MIR SINE MIR -58 204 40 1594 170 35 18 chr6 79684743 79685026 -102730216 + AluJo SINE Alu 1 288 -24 576 300 85 20 chr6 79685028 79685275 -102729967 + MARNA DNA Mariner 262 524 -62 40 0 0 0 chr6 79685443 79685483 -102729759 + AT_rich Low_complexity Low_complexity 1 40 0 2005 121 17 0 chr6 79685508 79685798 -102729444 - AluSp SINE Alu -14 299 5 1363 121 0 0 chr6 79686533 79686739 -102728503 - L1PA8 LINE L1 -4 6168 5963 2113 113 3 0 chr6 79687052 79687343 -102727899 + THE1C LTR MaLR 84 375 0 2499 103 25 88 chr6 79687343 79687818 -102727424 - L1PB4 LINE L1 -244 5912 5468 326 215 0 0 chr6 79690547 79690612 -102724630 - MER63B DNA MER1_type 0 434 370 2295 109 22 27 chr6 79690612 79690979 -102724263 + L1MA4 LINE L1 5655 6019 -281 189 0 0 0 chr6 79690982 79691003 -102724239 + (TA)n Simple_repeat Simple_repeat 2 22 0 254 93 111 0 chr6 79691008 79691062 -102724180 + L1MB4 LINE L1 6121 6180 0 1096 241 131 9 chr6 79691071 79691415 -102723827 - MER63B DNA MER1_type -48 388 3 1397 179 0 0 chr6 79691703 79691937 -102723305 - AluSx SINE Alu -30 282 49 28 0 0 0 chr6 79692600 79692628 -102722614 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr6 79693063 79693093 -102722149 + (CA)n Simple_repeat Simple_repeat 2 31 0 255 61 0 0 chr6 79693100 79693133 -102722109 + (TG)n Simple_repeat Simple_repeat 2 34 0 402 74 0 0 chr6 79694783 79694837 -102720405 + (CA)n Simple_repeat Simple_repeat 2 55 0 1541 169 23 10 chr6 79695480 79695788 -102719454 + Tigger6 DNA MER2_type 1273 1584 -13 392 289 15 44 chr6 79696214 79696349 -102718893 - L2 LINE L2 -4 3309 3179 24 0 0 0 chr6 79696813 79696837 -102718405 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr6 79696946 79696988 -102718254 + AT_rich Low_complexity Low_complexity 1 42 0 971 230 41 45 chr6 79697088 79697379 -102717863 + L1MD2 LINE L1 6068 6357 -2 1760 152 0 42 chr6 79697921 79698231 -102717011 - AluJb SINE Alu -15 297 1 553 282 84 35 chr6 79698718 79698920 -102716322 + MIR SINE MIR 29 240 -22 327 49 0 0 chr6 79699179 79699220 -102716022 + (TG)n Simple_repeat Simple_repeat 2 42 0 554 217 98 0 chr6 79699971 79700099 -102715143 + MER69A DNA AcHobo 19 164 -2362 571 61 0 0 chr6 79700099 79700181 -102715061 + L1PA2 LINE L1 6073 6154 -1 554 217 98 0 chr6 79700181 79700195 -102715047 + MER69A DNA AcHobo 164 175 -2 1727 196 0 0 chr6 79700963 79701269 -102713973 - AluJo SINE Alu -6 306 1 23 0 0 0 chr6 79702885 79702908 -102712334 + AT_rich Low_complexity Low_complexity 1 23 0 379 349 83 5 chr6 79703345 79703563 -102711679 - MIR SINE MIR -10 252 18 465 279 83 58 chr6 79704302 79704542 -102710700 - MIR SINE MIR -7 255 10 1794 162 13 10 chr6 79704594 79704896 -102710346 - AluJb SINE Alu -9 303 1 538 331 62 29 chr6 79705717 79705992 -102709250 + L3 LINE CR1 982 1265 -312 1353 214 22 0 chr6 79705997 79706268 -102708974 + AluJo SINE Alu 1 277 -35 243 79 0 0 chr6 79706276 79706314 -102708928 + (CTA)n Simple_repeat Simple_repeat 1 38 0 189 319 43 21 chr6 79706325 79706419 -102708823 + L3 LINE CR1 1255 1350 -227 310 276 23 161 chr6 79706451 79706625 -102708617 + MER91A DNA MER1_type 35 184 -12 199 347 68 48 chr6 79706621 79706768 -102708474 + L3 LINE CR1 1340 1489 -88 * 1524 129 54 27 chr6 79707184 79707478 -102707764 + L1MA3 LINE L1 5999 6300 -5 1467 155 101 8 chr6 79708609 79708892 -102706350 - AluJb SINE Alu 0 307 1 22 56 0 0 chr6 79712140 79712176 -102703066 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 79712368 79712390 -102702852 + AT_rich Low_complexity Low_complexity 1 22 0 222 214 0 0 chr6 79712978 79713020 -102702222 - L2 LINE L2 -20 3252 3211 513 327 14 5 chr6 79713272 79713495 -102701747 - MARNA DNA Mariner -117 469 245 23 68 0 0 chr6 79714083 79714127 -102701115 + AT_rich Low_complexity Low_complexity 1 44 0 6227 62 4 4 chr6 79715381 79716187 -102699055 - L1PA8 LINE L1 0 6172 5367 2242 95 7 3 chr6 79716325 79716629 -102698613 + AluSq SINE Alu 1 305 -8 465 234 56 100 chr6 79716792 79717023 -102698219 - L1MC4 LINE L1 -1124 6918 6698 792 304 31 34 chr6 79717379 79717794 -102697448 - L1ME LINE L1 -439 5731 5318 371 285 125 36 chr6 79717935 79718510 -102696732 - L1ME LINE L1 -1004 5142 4443 1848 194 28 3 chr6 79718510 79718866 -102696376 - MLT1A1 LTR MaLR 0 365 1 371 285 125 36 chr6 79718866 79719235 -102696007 - L1ME LINE L1 -1703 4443 4108 485 304 28 32 chr6 79719382 79719599 -102695643 - MIR SINE MIR -1 261 46 2027 125 11 0 chr6 79720021 79720325 -102694917 - AluSx SINE Alu 0 307 1 180 0 0 0 chr6 79720814 79720834 -102694408 + (TAAAAA)n Simple_repeat Simple_repeat 6 25 0 252 0 0 0 chr6 79721640 79721668 -102693574 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1806 180 0 3 chr6 79723001 79723296 -102691946 - AluJb SINE Alu -17 295 2 365 269 41 64 chr6 79723373 79723544 -102691698 + MIR SINE MIR 96 262 0 257 328 34 50 chr6 79723551 79723670 -102691572 + L2 LINE L2 3156 3272 0 556 185 0 0 chr6 79723755 79723847 -102691395 + FLAM_C SINE Alu 34 125 -18 590 265 153 59 chr6 79724374 79724936 -102690306 + L1MEd LINE L1 594 1208 -4911 379 303 157 11 chr6 79724982 79725160 -102690082 + HAL1 LINE L1 1366 1569 -938 2146 111 63 26 chr6 79725519 79725870 -102689372 - THE1B LTR MaLR 0 364 1 311 255 72 28 chr6 79726266 79726517 -102688725 + L1MEd LINE L1 2134 2395 -3734 270 333 147 28 chr6 79726574 79726955 -102688287 - L2 LINE L2 -191 3081 2648 1135 259 43 105 chr6 79727189 79727741 -102687501 - L2 LINE L2 0 3313 2777 206 283 0 0 chr6 79727927 79727973 -102687269 - L2 LINE L2 -17 3255 3210 672 187 0 0 chr6 79728095 79728234 -102687008 + L1MA4 LINE L1 6157 6295 -5 1494 182 0 35 chr6 79728482 79728801 -102686441 - L1MA10 LINE L1 -2 6332 6025 428 376 58 21 chr6 79729430 79729760 -102685482 + L3 LINE CR1 225 566 -1011 304 258 0 0 chr6 79732126 79732188 -102683054 - L2 LINE L2 0 3272 3211 237 222 0 0 chr6 79733353 79733398 -102681844 - MER5A DNA MER1_type -67 122 78 2215 51 3 38 chr6 79733398 79733691 -102681551 + AluY SINE Alu 22 304 -7 265 139 58 23 chr6 79734012 79734098 -102681144 + (TA)n Simple_repeat Simple_repeat 1 89 0 254 341 89 8 chr6 79734834 79734957 -102680285 - MER5A DNA MER1_type -1 188 56 273 244 89 0 chr6 79734990 79735080 -102680162 - MER94 DNA DNA -31 103 6 249 57 0 0 chr6 79735311 79735346 -102679896 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 1963 142 3 7 chr6 79735481 79735783 -102679459 + AluSx SINE Alu 1 301 -11 186 43 0 0 chr6 79735859 79735882 -102679360 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6510 87 8 0 chr6 79736378 79737389 -102677853 - L1PA8 LINE L1 -2 6170 5163 323 314 105 20 chr6 79737409 79737715 -102677527 - L1ME4a LINE L1 -220 5901 5570 30 69 0 0 chr6 79737748 79737806 -102677436 + AT_rich Low_complexity Low_complexity 1 58 0 2246 113 19 34 chr6 79737875 79738065 -102677177 - L1PB1 LINE L1 0 6867 6684 2127 109 27 0 chr6 79738065 79738359 -102676883 - AluSg SINE Alu -8 302 1 2246 113 19 34 chr6 79738359 79738547 -102676695 - L1PB1 LINE L1 -183 6684 6495 273 80 16 80 chr6 79738615 79738740 -102676502 + (TA)n Simple_repeat Simple_repeat 2 118 0 15297 175 48 14 chr6 79738741 79739205 -102676037 - L1PB1 LINE L1 -360 6507 6060 1438 56 0 35 chr6 79739205 79739402 -102675840 - L1PA5 LINE L1 -5 6149 5960 15297 175 48 14 chr6 79739402 79744591 -102670651 - L1PB1 LINE L1 -807 6060 609 1892 264 28 0 chr6 79744618 79745149 -102670093 - L1PB1 LINE L1 -6312 551 6 1030 110 7 0 chr6 79745396 79745551 -102669691 + L1PA13 LINE L1 6005 6160 -3 21 0 0 0 chr6 79745893 79745914 -102669328 + AT_rich Low_complexity Low_complexity 1 21 0 1038 241 41 26 chr6 79746360 79746705 -102668537 + L1MA9 LINE L1 5925 6274 -38 259 286 0 0 chr6 79748486 79748549 -102666693 - MIR3 SINE MIR -21 187 125 387 0 0 0 chr6 79748787 79748830 -102666412 + (TG)n Simple_repeat Simple_repeat 1 43 0 290 341 0 0 chr6 79749285 79749373 -102665869 - L2 LINE L2 -543 2771 2684 1530 188 27 33 chr6 79749400 79749767 -102665475 + MLT1A1 LTR MaLR 1 365 0 255 246 0 31 chr6 79749792 79749857 -102665385 + L2 LINE L2 3249 3311 -2 236 320 60 0 chr6 79749834 79749934 -102665308 - L2 LINE L2 -641 2673 2568 * 220 376 0 28 chr6 79750730 79750839 -102664403 + MIR SINE MIR 24 129 -133 1281 102 0 0 chr6 79751111 79751288 -102663954 + L1PA13 LINE L1 5976 6152 -11 1391 198 64 47 chr6 79751905 79752380 -102662862 - MER39 LTR ERV1 0 707 2 29 0 0 0 chr6 79752823 79752852 -102662390 + AT_rich Low_complexity Low_complexity 1 29 0 336 330 32 72 chr6 79753241 79753520 -102661722 + L3b LINE CR1 1132 1399 -184 22 56 0 0 chr6 79753783 79753819 -102661423 + AT_rich Low_complexity Low_complexity 1 36 0 207 191 0 0 chr6 79753901 79753943 -102661299 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 33 0 0 chr6 79754965 79754995 -102660247 + AT_rich Low_complexity Low_complexity 1 30 0 2234 92 0 3 chr6 79755666 79755994 -102659248 - AluSc SINE Alu 0 327 1 1079 151 22 5 chr6 79756102 79756287 -102658955 - MER20 DNA MER1_type 0 219 32 286 228 195 16 chr6 79756400 79756523 -102658719 - MER103 DNA DNA -20 146 2 221 247 12 0 chr6 79757153 79757234 -102658008 + CT-rich Low_complexity Low_complexity 5 86 0 716 259 47 47 chr6 79757607 79757862 -102657380 - MIR SINE MIR 0 262 8 21 71 0 0 chr6 79757876 79757918 -102657324 + AT_rich Low_complexity Low_complexity 1 42 0 1819 132 36 4 chr6 79758243 79758523 -102656719 + AluSx SINE Alu 1 289 -23 527 274 45 57 chr6 79759728 79759943 -102655299 + MIR SINE MIR 35 247 -15 5241 142 28 27 chr6 79760509 79761024 -102654218 - L1MA8 LINE L1 0 6291 5773 2350 109 0 0 chr6 79761024 79761336 -102653906 - AluSx SINE Alu 0 312 1 5241 142 28 27 chr6 79761336 79761794 -102653448 - L1MA8 LINE L1 -518 5773 5317 1213 151 64 17 chr6 79761807 79762095 -102653147 - L1PA16 LINE L1 -9 6156 5834 306 291 0 38 chr6 79762944 79763023 -102652219 + MER81 DNA DNA 3 78 -36 254 295 88 47 chr6 79763685 79763878 -102651364 - L2 LINE L2 0 3313 3113 385 349 117 28 chr6 79763956 79764280 -102650962 - L2 LINE L2 -340 2974 2622 203 146 0 42 chr6 79766876 79766924 -102648318 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 312 288 90 36 chr6 79767086 79767197 -102648045 - L2 LINE L2 0 3272 3156 189 282 42 56 chr6 79767344 79767415 -102647827 + MIR SINE MIR 76 145 -117 213 163 70 23 chr6 79767800 79767886 -102647356 + (CAGTA)n Simple_repeat Simple_repeat 2 91 0 180 0 0 0 chr6 79768804 79768824 -102646418 + (A)n Simple_repeat Simple_repeat 1 20 0 1932 234 138 41 chr6 79769619 79770350 -102644892 + HAL1 LINE L1 5 806 -1701 471 249 91 41 chr6 79770369 79770469 -102644773 + HAL1 LINE L1 2105 2199 -308 333 100 0 0 chr6 79770469 79770519 -102644723 + (TG)n Simple_repeat Simple_repeat 1 50 0 471 249 91 41 chr6 79770519 79770639 -102644603 + HAL1 LINE L1 2199 2336 -171 248 200 0 0 chr6 79770691 79770741 -102644501 + HAL1 LINE L1 2457 2506 -1 251 222 42 69 chr6 79772092 79772164 -102643078 - L2 LINE L2 -86 3227 3158 536 216 0 0 chr6 79772202 79772313 -102642929 + FRAM SINE Alu 65 175 -1 304 353 147 0 chr6 79772322 79772478 -102642764 - L2 LINE L2 -207 3106 2928 520 238 6 6 chr6 79772505 79772669 -102642573 + (ATG)n Simple_repeat Simple_repeat 2 165 0 691 295 105 34 chr6 79773025 79773289 -102641953 + L2 LINE L2 836 1141 -2173 2478 68 3 0 chr6 79773289 79773585 -102641657 - AluSq SINE Alu -6 307 11 691 295 105 34 chr6 79773585 79773730 -102641512 + L2 LINE L2 1141 1274 -2040 872 275 96 37 chr6 79773734 79774385 -102640857 + L2 LINE L2 1583 2356 -958 539 295 77 58 chr6 79774416 79774677 -102640565 + L2 LINE L2 3036 3301 -12 21 36 0 0 chr6 79775080 79775108 -102640134 + AT_rich Low_complexity Low_complexity 1 28 0 181 247 321 0 chr6 79775216 79775297 -102639945 + MIR3 SINE MIR 97 203 -5 25 51 0 0 chr6 79776174 79776213 -102639029 + AT_rich Low_complexity Low_complexity 1 39 0 675 204 52 57 chr6 79776636 79776796 -102638446 + L1MB7 LINE L1 5956 6116 -68 2099 134 0 16 chr6 79776796 79777102 -102638140 - AluSx SINE Alu -10 302 2 675 204 52 57 chr6 79777102 79777171 -102638071 + L1MB7 LINE L1 6116 6184 0 241 356 0 0 chr6 79777178 79777237 -102638005 - L2 LINE L2 -89 3183 3125 341 293 10 0 chr6 79778465 79778564 -102636678 + MIR3 SINE MIR 109 208 0 547 264 184 15 chr6 79779113 79779314 -102635928 + MIR SINE MIR 2 236 -26 417 39 0 0 chr6 79779719 79779770 -102635472 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 402 21 0 0 chr6 79779870 79779917 -102635325 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 246 313 78 17 chr6 79779923 79780038 -102635204 - L2 LINE L2 -10 3262 3141 614 236 67 23 chr6 79781806 79781977 -102633265 + MIR SINE MIR 1 172 -36 659 295 27 0 chr6 79782061 79782244 -102632998 - MIR SINE MIR -73 189 2 263 297 77 0 chr6 79782261 79782352 -102632890 + MIR SINE MIR 165 262 0 403 239 30 82 chr6 79782559 79782693 -102632549 - L2 LINE L2 0 3313 3187 1650 44 0 0 chr6 79783418 79783624 -102631618 - L1PA4 LINE L1 0 6155 5950 2091 123 3 3 chr6 79783624 79783916 -102631326 - AluSx SINE Alu -16 296 5 368 75 0 0 chr6 79783920 79783973 -102631269 - L1MA7 LINE L1 -59 6232 6180 312 269 110 44 chr6 79784067 79784249 -102630993 - MIR SINE MIR -66 196 3 24 32 0 0 chr6 79786100 79786131 -102629111 + AT_rich Low_complexity Low_complexity 1 31 0 2001 126 3 22 chr6 79789431 79789748 -102625494 - AluSx SINE Alu -1 311 1 332 345 20 20 chr6 79791382 79791530 -102623712 - L2 LINE L2 0 3313 3166 297 0 0 0 chr6 79792861 79792894 -102622348 + (TG)n Simple_repeat Simple_repeat 2 34 0 708 156 0 16 chr6 79794122 79794279 -102620963 + AluSg/x SINE Alu 154 308 0 306 276 171 26 chr6 79794448 79794600 -102620642 - MIR SINE MIR -17 245 72 287 171 0 49 chr6 79794805 79794887 -102620355 + T-rich Low_complexity Low_complexity 1 78 0 811 179 0 14 chr6 79794890 79795035 -102620207 - FLAM_C SINE Alu 0 143 1 206 294 15 81 chr6 79795365 79795462 -102619780 + MIR3 SINE MIR 65 152 -56 499 283 0 33 chr6 79795462 79795500 -102619742 - MER5B DNA MER1_type 0 178 140 2225 123 0 0 chr6 79795500 79795800 -102619442 - AluSx SINE Alu -12 300 1 499 283 0 33 chr6 79795800 79795945 -102619297 - MER5B DNA MER1_type -38 140 1 206 294 15 81 chr6 79795945 79795983 -102619259 + MIR3 SINE MIR 152 191 -17 283 267 44 44 chr6 79796317 79796407 -102618835 + L2 LINE L2 3201 3290 -23 21 0 0 0 chr6 79798612 79798633 -102616609 + AT_rich Low_complexity Low_complexity 1 21 0 1560 132 16 20 chr6 79798734 79799018 -102616224 - AluSg SINE Alu 0 323 41 255 197 28 56 chr6 79799195 79799266 -102615976 - AluSc SINE Alu -119 180 140 269 267 89 30 chr6 79799270 79799371 -102615871 + FRAM SINE Alu 48 154 -12 617 188 26 8 chr6 79799381 79799498 -102615744 + FLAM_A SINE Alu 1 119 -14 2453 58 0 16 chr6 79799725 79800035 -102615207 + AluSx SINE Alu 1 305 -7 1647 126 18 56 chr6 79800220 79800285 -102614957 + L1PB3 LINE L1 5873 5939 -215 1890 152 0 3 chr6 79800285 79800568 -102614674 + AluJb SINE Alu 1 282 -30 690 100 0 0 chr6 79800573 79800673 -102614569 + (TA)n Simple_repeat Simple_repeat 2 101 0 1647 126 18 56 chr6 79800673 79800887 -102614355 + L1PB3 LINE L1 5943 6147 -7 22 0 0 0 chr6 79801433 79801455 -102613787 + AT_rich Low_complexity Low_complexity 1 22 0 1660 159 33 7 chr6 79802045 79802342 -102612900 - AluSg SINE Alu 0 306 3 270 143 0 0 chr6 79803164 79803206 -102612036 + Alu SINE Alu 244 285 -17 1891 152 7 13 chr6 79804540 79804842 -102610400 - AluJb SINE Alu -9 303 4 1461 287 144 42 chr6 79808102 79809307 -102605935 - L2 LINE L2 0 3313 1976 2152 129 3 0 chr6 79809738 79810033 -102605209 - AluSx SINE Alu -14 298 3 272 313 139 40 chr6 79810182 79810562 -102604680 + L2 LINE L2 2074 2491 -823 698 249 58 19 chr6 79810812 79811017 -102604225 - L2 LINE L2 0 3313 3101 6166 93 14 10 chr6 79811136 79812389 -102602853 - L1PB1 LINE L1 -8 6859 5607 6223 72 0 0 chr6 79812389 79813200 -102602042 + L1PA7 LINE L1 5344 6154 0 10793 165 21 62 chr6 79813229 79817652 -102597590 - L1PB1 LINE L1 -1241 5621 1392 595 184 55 0 chr6 79817824 79817964 -102597278 - MLT2A2 LTR ERVL -71 483 293 * 655 128 0 0 chr6 79817958 79818052 -102597190 - MLT2A1 LTR ERVL -142 302 209 5449 133 9 60 chr6 79819148 79820309 -102594933 - L1PA15 LINE L1 -3 6162 5034 2345 55 7 3 chr6 79820309 79820602 -102594640 - AluY SINE Alu -17 294 1 5449 133 9 60 chr6 79820602 79820734 -102594508 - L1PA15 LINE L1 -1131 5034 4897 5308 72 47 11 chr6 79820929 79821637 -102593605 - L1PA6 LINE L1 -2 6152 5420 2268 229 8 6 chr6 79823319 79823820 -102591422 - L1PA15 LINE L1 -1771 4375 3874 885 316 74 39 chr6 79824474 79824961 -102590281 + L2 LINE L2 2804 3307 -6 226 356 126 0 chr6 79825152 79825239 -102590003 + L2 LINE L2 3171 3268 -4 21 0 0 0 chr6 79825796 79825817 -102589425 + AT_rich Low_complexity Low_complexity 1 21 0 380 257 51 89 chr6 79825887 79825994 -102589248 + MIR SINE MIR 57 155 -107 1995 137 0 3 chr6 79825994 79826362 -102588880 + AluSx SINE Alu 1 367 0 380 257 51 89 chr6 79826362 79826467 -102588775 + MIR SINE MIR 155 262 0 23 0 0 0 chr6 79826929 79826952 -102588290 + AT_rich Low_complexity Low_complexity 1 23 0 1719 163 21 3 chr6 79828651 79828934 -102586308 - AluJo SINE Alu -23 289 2 942 263 96 64 chr6 79830167 79830632 -102584610 - MLT1J1 LTR MaLR -1 445 1 186 254 75 30 chr6 79830859 79830926 -102584316 + MIR SINE MIR 191 260 -2 317 291 166 32 chr6 79830958 79831184 -102584058 + L1MD2 LINE L1 5494 5757 -2051 2498 166 41 0 chr6 79831184 79831599 -102583643 - MSTB1 LTR MaLR 0 432 1 317 291 166 32 chr6 79831599 79831619 -102583623 + L1MD2 LINE L1 5757 5773 -2035 595 253 107 52 chr6 79832899 79833077 -102582165 + MIR SINE MIR 4 199 -63 1312 159 23 0 chr6 79833077 79833291 -102581951 - MER20 DNA MER1_type 0 219 1 595 253 107 52 chr6 79833291 79833345 -102581897 + MIR SINE MIR 199 249 -13 472 211 72 46 chr6 79833820 79833972 -102581270 - L2 LINE L2 0 3313 3158 391 219 14 130 chr6 79834398 79834544 -102580698 + MIR SINE MIR 109 237 -25 2358 92 0 0 chr6 79834963 79835258 -102579984 - AluSc SINE Alu -14 295 1 226 287 79 10 chr6 79835315 79835416 -102579826 - L1MC/D LINE L1 -1897 5911 5804 1442 155 72 11 chr6 79835498 79835762 -102579480 + AluJo SINE Alu 1 280 -32 40 21 0 0 chr6 79837441 79837488 -102577754 + AT_rich Low_complexity Low_complexity 1 47 0 2350 133 9 83 chr6 79837734 79838194 -102577048 - LTR37A LTR ERV1 0 426 1 1344 170 0 0 chr6 79838344 79838550 -102576692 + AluJo SINE Alu 1 206 -106 405 0 0 0 chr6 79840308 79840353 -102574889 + (CA)n Simple_repeat Simple_repeat 2 46 0 1075 168 20 0 chr6 79840361 79840558 -102574684 + L1MD2 LINE L1 6158 6358 -1 2514 77 0 0 chr6 79841194 79841504 -102573738 + AluY SINE Alu 1 310 -1 1732 135 0 0 chr6 79843876 79844113 -102571129 + AluSq SINE Alu 1 237 -76 17179 81 4 0 chr6 79846281 79848573 -102566669 + L1P LINE L1 596 2896 -3250 377 313 57 5 chr6 79848769 79848961 -102566281 - L2 LINE L2 -397 2917 2716 1924 164 11 77 chr6 79849032 79849175 -102566067 - L1MA7 LINE L1 0 6291 6140 2011 141 14 0 chr6 79849175 79849465 -102565777 + AluSx SINE Alu 1 294 -18 1924 164 11 77 chr6 79849465 79849765 -102565477 - L1MA7 LINE L1 -151 6140 5877 1084 176 25 0 chr6 79849765 79849964 -102565278 + L1 LINE L1 3894 4097 -2049 * 4577 119 151 4 chr6 79849962 79850744 -102564498 + L1M1 LINE L1 1642 2538 -5027 845 216 54 15 chr6 79850863 79851067 -102564175 + MIR SINE MIR 21 232 -30 278 267 108 72 chr6 79851110 79851252 -102563990 + L1ME4a LINE L1 5804 5939 -182 2041 131 0 3 chr6 79851252 79851542 -102563700 - AluSq SINE Alu -24 289 1 278 267 108 72 chr6 79851542 79851649 -102563593 + L1ME4a LINE L1 5939 6068 -53 387 0 0 0 chr6 79851649 79851692 -102563550 + (TA)n Simple_repeat Simple_repeat 2 44 0 278 267 108 72 chr6 79851692 79851748 -102563494 + L1ME4a LINE L1 6068 6121 0 194 330 30 40 chr6 79851850 79851950 -102563292 - MIR SINE MIR -9 253 155 * 607 249 73 56 chr6 79851946 79852179 -102563063 + MIR SINE MIR 9 245 -17 218 333 57 9 chr6 79852218 79852323 -102562919 - MIR SINE MIR -122 140 31 186 345 0 0 chr6 79852878 79852933 -102562309 + L3 LINE CR1 1521 1575 -2 608 286 80 34 chr6 79853043 79853281 -102561961 - L2 LINE L2 0 3313 3065 2219 89 24 0 chr6 79853401 79853692 -102561550 - AluSx SINE Alu -14 298 1 1063 271 103 61 chr6 79853719 79854480 -102560762 - L2 LINE L2 -262 3051 2264 2171 85 4 0 chr6 79854868 79855140 -102560102 + AluSg SINE Alu 1 273 -37 261 0 0 0 chr6 79855146 79855175 -102560067 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2421 97 3 3 chr6 79855500 79855810 -102559432 + AluSg SINE Alu 1 310 0 355 227 0 0 chr6 79856876 79856951 -102558291 - L1MC4 LINE L1 -805 7237 7163 418 288 56 16 chr6 79858904 79859029 -102556213 - L2 LINE L2 -683 2631 2502 22 0 0 0 chr6 79859267 79859289 -102555953 + AT_rich Low_complexity Low_complexity 1 22 0 309 303 61 0 chr6 79859410 79859509 -102555733 + MIR SINE MIR 62 166 -96 278 286 66 0 chr6 79859588 79859679 -102555563 + MLT1L LTR MaLR 116 212 -403 233 274 226 0 chr6 79860621 79860705 -102554537 - L2 LINE L2 -1 3271 3169 287 244 100 75 chr6 79860757 79860917 -102554325 - L2 LINE L2 -1043 2271 2108 10434 41 87 7 chr6 79860921 79862204 -102553038 + SVA Other Other 1 1386 0 2459 90 0 0 chr6 79862217 79862518 -102552724 + AluSg SINE Alu 1 301 -9 4130 180 35 25 chr6 79862708 79863401 -102551841 + MER21B LTR ERV1 1 704 -159 2094 130 0 0 chr6 79863401 79863701 -102551541 - AluSx SINE Alu -12 300 1 4130 180 35 25 chr6 79863701 79863770 -102551472 + MER21B LTR ERV1 704 771 -92 1303 153 39 14 chr6 79863770 79864207 -102551035 + LTR54 LTR ERV1 1 510 0 414 159 26 124 chr6 79864207 79864314 -102550928 + MER21B LTR ERV1 768 863 0 203 323 60 60 chr6 79864322 79864445 -102550797 - L2 LINE L2 -1269 2045 1920 2455 53 7 3 chr6 79864445 79864749 -102550493 - AluY SINE Alu -6 305 1 203 323 60 60 chr6 79864749 79864826 -102550416 - L2 LINE L2 -1393 1921 1845 1557 37 11 0 chr6 79865032 79865222 -102550020 + AluY SINE Alu 117 308 -3 2074 92 66 40 chr6 79865393 79865529 -102549713 + AluSx SINE Alu 1 132 -180 2153 122 0 3 chr6 79865529 79865852 -102549390 + AluSq SINE Alu 1 313 0 2074 92 66 40 chr6 79865852 79866018 -102549224 + AluSx SINE Alu 132 311 -1 1855 141 3 30 chr6 79866403 79866739 -102548503 + AluSx SINE Alu 2 312 0 23 39 0 39 chr6 79867109 79867135 -102548107 + AT_rich Low_complexity Low_complexity 1 26 -24 2091 125 0 30 chr6 79867135 79867440 -102547802 - AluSx SINE Alu -16 296 1 23 39 0 39 chr6 79867440 79867465 -102547777 + AT_rich Low_complexity Low_complexity 26 50 0 564 15 0 0 chr6 79869640 79869705 -102545537 + (TG)n Simple_repeat Simple_repeat 1 65 0 1966 137 17 10 chr6 79873147 79873446 -102541796 + AluJb SINE Alu 1 301 -11 458 30 45 0 chr6 79873752 79873818 -102541424 + (TTTTA)n Simple_repeat Simple_repeat 2 70 0 936 109 0 0 chr6 79873818 79873937 -102541305 - AluSg SINE Alu -191 119 1 328 157 0 0 chr6 79873964 79874015 -102541227 + Alu SINE Alu 2 52 -250 2166 134 0 7 chr6 79875071 79875378 -102539864 - AluSx SINE Alu -7 305 1 35 0 0 0 chr6 79877547 79877582 -102537660 + AT_rich Low_complexity Low_complexity 1 35 0 1477 109 0 0 chr6 79878236 79878429 -102536813 + AluSg/x SINE Alu 107 299 -11 22 0 0 0 chr6 79878651 79878673 -102536569 + AT_rich Low_complexity Low_complexity 1 22 0 261 325 120 0 chr6 79879660 79879777 -102535465 + L2 LINE L2 3182 3312 -1 218 273 80 34 chr6 79879805 79879893 -102535349 - L2 LINE L2 -12 3301 3210 496 221 14 62 chr6 79880405 79880550 -102534692 - MIR SINE MIR -9 253 116 797 135 40 0 chr6 79881438 79881564 -102533678 - FLAM_C SINE Alu -2 131 1 2342 99 3 3 chr6 79882443 79882746 -102532496 - AluSg SINE Alu -7 303 1 204 271 169 0 chr6 79882815 79882874 -102532368 + L2 LINE L2 3198 3266 -6 367 279 16 33 chr6 79883146 79883268 -102531974 - MIR SINE MIR -108 154 35 2583 57 0 0 chr6 79884090 79884390 -102530852 + AluY SINE Alu 1 300 -11 1897 84 0 0 chr6 79884404 79884654 -102530588 + L1PA6 LINE L1 5902 6151 -3 1658 201 40 0 chr6 79884661 79885010 -102530232 - MER63B DNA MER1_type -73 363 1 1790 169 10 16 chr6 79885198 79885506 -102529736 - AluJb SINE Alu -6 306 1 436 350 81 44 chr6 79885646 79885967 -102529275 + L2 LINE L2 2688 3036 -236 1910 144 3 14 chr6 79885967 79886259 -102528983 + AluJo SINE Alu 1 289 -23 436 350 81 44 chr6 79886259 79886473 -102528769 + L2 LINE L2 3036 3241 -31 463 302 153 34 chr6 79886545 79886923 -102528319 + L2 LINE L2 2850 3272 0 283 288 59 51 chr6 79887899 79888017 -102527225 - L2 LINE L2 -8 3264 3146 296 285 146 15 chr6 79888029 79888203 -102527039 - MIR SINE MIR -22 240 44 1090 228 0 18 chr6 79889077 79889305 -102525937 - MER58A DNA MER1_type 0 224 1 722 240 45 0 chr6 79889548 79889702 -102525540 - MIR SINE MIR -87 175 15 278 191 0 0 chr6 79889805 79889852 -102525390 + L2 LINE L2 3264 3310 -3 866 181 72 0 chr6 79890649 79890815 -102524427 - MER5B DNA MER1_type 0 178 1 283 239 0 45 chr6 79891122 79891189 -102524053 - L2 LINE L2 0 3313 3250 243 0 0 0 chr6 79891425 79891452 -102523790 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 629 258 32 103 chr6 79891452 79891704 -102523538 - L2 LINE L2 -14 3258 3025 2325 164 46 17 chr6 79891891 79892307 -102522935 + MSTC LTR MaLR 1 428 0 871 152 8 0 chr6 79893011 79893143 -102522099 - FLAM_C SINE Alu -10 133 1 627 300 104 59 chr6 79894214 79894878 -102520364 + L2 LINE L2 1847 2540 -774 2175 142 116 10 chr6 79894925 79895312 -102519930 - MSTA LTR MaLR 0 428 1 198 256 195 0 chr6 79895697 79895779 -102519463 + L2 LINE L2 3213 3310 -3 2195 108 3 7 chr6 79895997 79896293 -102518949 + AluSp SINE Alu 1 295 -18 624 272 33 22 chr6 79896576 79896756 -102518486 - MIR SINE MIR 0 262 81 516 177 129 54 chr6 79897219 79897366 -102517876 + MER5C DNA MER1_type 12 169 -155 790 170 0 22 chr6 79897646 79897781 -102517461 - FLAM_C SINE Alu -1 132 1 683 168 0 0 chr6 79899060 79899173 -102516069 - AluSg/x SINE Alu -4 306 194 848 214 14 42 chr6 79899729 79899944 -102515298 + MER3 DNA MER1_type 1 209 0 424 256 24 0 chr6 79900051 79900176 -102515066 + MER94 DNA DNA 1 128 -6 234 0 0 0 chr6 79900486 79900512 -102514730 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2022 135 0 0 chr6 79900515 79900797 -102514445 - AluSx SINE Alu -30 282 1 255 61 0 0 chr6 79900849 79900882 -102514360 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 375 23 0 0 chr6 79900984 79901028 -102514214 + (TG)n Simple_repeat Simple_repeat 1 44 0 392 274 56 0 chr6 79902395 79902574 -102512668 + L1ME4a LINE L1 5698 5886 -235 232 173 120 0 chr6 79902586 79902661 -102512581 + L1ME4a LINE L1 6021 6104 -17 1949 126 3 33 chr6 79902726 79903028 -102512214 - AluSx SINE Alu -19 293 1 1020 217 104 46 chr6 79903454 79903799 -102511443 + MLT1A1 LTR MaLR 1 365 0 538 274 57 78 chr6 79903799 79904044 -102511198 - MIR SINE MIR -3 259 20 1279 235 77 20 chr6 79904408 79904850 -102510392 + MLT1C LTR MaLR 1 467 0 409 305 12 55 chr6 79904968 79904996 -102510246 - MIR SINE MIR -75 187 159 2341 76 0 13 chr6 79904996 79905298 -102509944 - AluY SINE Alu -13 298 1 409 305 12 55 chr6 79905298 79905433 -102509809 - MIR SINE MIR -103 159 31 2216 96 38 0 chr6 79905486 79905778 -102509464 - AluSq SINE Alu -2 311 9 1408 169 36 63 chr6 79906164 79906466 -102508776 + AluJo SINE Alu 1 294 -18 4357 151 21 58 chr6 79907217 79907668 -102507574 - MER6 DNA MER2_type -4 861 395 2270 104 0 13 chr6 79907668 79907984 -102507258 - AluSx SINE Alu 0 312 1 4357 151 21 58 chr6 79907984 79908047 -102507195 - MER6 DNA MER2_type -470 395 331 1615 177 10 31 chr6 79908047 79908341 -102506901 - AluJo SINE Alu -24 288 1 4357 151 21 58 chr6 79908341 79908370 -102506872 - MER6 DNA MER2_type -534 331 302 186 43 0 0 chr6 79908370 79908393 -102506849 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 4357 151 21 58 chr6 79908393 79908740 -102506502 - MER6 DNA MER2_type -563 302 2 2090 124 0 33 chr6 79909222 79909548 -102505694 + AluSq SINE Alu 1 313 0 3415 144 23 25 chr6 79909833 79910484 -102504758 - L1MA4 LINE L1 -5 6295 5646 523 286 22 22 chr6 79910513 79910691 -102504551 + MER5B DNA MER1_type 1 178 0 2339 42 0 11 chr6 79911133 79911459 -102503783 + AluY SINE Alu 1 323 0 364 334 129 39 chr6 79911858 79911946 -102503296 + L1ME4a LINE L1 5518 5597 -524 2682 105 44 7 chr6 79911946 79912375 -102502867 - L1PA13 LINE L1 0 6163 5719 364 334 129 39 chr6 79912375 79912774 -102502468 + L1ME4a LINE L1 5597 6049 -72 2366 71 10 0 chr6 79912883 79913192 -102502050 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 79914006 79914028 -102501214 + GC_rich Low_complexity Low_complexity 1 22 0 2028 118 37 0 chr6 79914800 79915097 -102500145 - AluSx SINE Alu -4 308 1 386 211 32 58 chr6 79915622 79915778 -102499464 - L1ME4a LINE L1 -2 6119 5968 233 345 41 57 chr6 79916309 79916503 -102498739 + L2 LINE L2 3006 3196 -76 25 31 0 0 chr6 79917603 79917635 -102497607 + AT_rich Low_complexity Low_complexity 1 32 0 232 318 0 0 chr6 79917922 79917988 -102497254 + MER112 DNA MER1_type 14 79 -181 2364 285 103 19 chr6 79918028 79919164 -102496078 + HAL1 LINE L1 4 1235 -1272 635 294 39 0 chr6 79919274 79919505 -102495737 + HAL1 LINE L1 1636 1875 -632 767 265 176 35 chr6 79919607 79920233 -102495009 + HAL1 LINE L1 1717 2430 -77 1703 140 63 3 chr6 79920285 79920600 -102494642 - L1MD1 LINE L1 -1 6241 5908 651 193 7 13 chr6 79920677 79920827 -102494415 - L1MD1 LINE L1 -336 5906 5758 936 285 20 8 chr6 79921934 79922187 -102493055 + MIR SINE MIR 5 260 -2 8291 223 41 40 chr6 79924334 79927922 -102487320 + L1MD2 LINE L1 2469 6077 -282 1413 99 0 0 chr6 79927922 79928113 -102487129 - AluY SINE Alu -3 308 118 187 93 103 10 chr6 79928477 79928574 -102486668 + (TA)n Simple_repeat Simple_repeat 2 107 0 1892 200 72 74 chr6 79928583 79929207 -102486035 - L1MD1 LINE L1 -497 5745 5127 2059 110 14 3 chr6 79929207 79929499 -102485743 - AluSg SINE Alu -15 295 1 1892 200 72 74 chr6 79929499 79929649 -102485593 - L1MD1 LINE L1 -1115 5127 4978 225 213 40 40 chr6 79929836 79929911 -102485331 + MER112 DNA MER1_type 148 222 -38 247 207 0 35 chr6 79931324 79931382 -102483860 - L2 LINE L2 0 3272 3217 532 273 40 68 chr6 79931724 79931973 -102483269 - MIR SINE MIR 0 262 21 2089 136 0 7 chr6 79932361 79932670 -102482572 - AluJb SINE Alu -3 309 3 987 161 144 85 chr6 79932924 79933278 -102481964 + THE1C LTR MaLR 1 375 0 405 242 204 76 chr6 79933626 79933837 -102481405 + MIR SINE MIR 8 245 -17 1410 232 149 15 chr6 79934010 79934420 -102480822 + MLT1H LTR MaLR 74 538 -11 21 0 0 0 chr6 79934943 79934964 -102480278 + AT_rich Low_complexity Low_complexity 1 21 0 428 292 196 24 chr6 79935724 79935974 -102479268 - L3 LINE CR1 -6 1571 1279 180 0 0 0 chr6 79936076 79936096 -102479146 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2243 99 0 0 chr6 79936098 79936381 -102478861 - AluSq SINE Alu -30 283 1 1754 223 131 20 chr6 79936703 79937191 -102478051 + MLT1F LTR MaLR 1 542 0 1818 146 116 6 chr6 79937645 79937974 -102477268 + MLT1A1 LTR MaLR 1 365 0 386 261 127 0 chr6 79939664 79939798 -102475444 + MLT1L LTR MaLR 91 241 -374 294 322 9 0 chr6 79940001 79940116 -102475126 + MLT1L LTR MaLR 500 615 0 755 282 35 4 chr6 79941208 79941435 -102473807 + MIR SINE MIR 28 261 -1 2213 153 38 0 chr6 79942939 79943312 -102471930 + MLT1B LTR MaLR 4 390 0 447 242 73 0 chr6 79943628 79943793 -102471449 - L1ME4a LINE L1 -6 6115 5939 427 200 0 73 chr6 79943900 79944010 -102471232 - L1ME4a LINE L1 -478 5643 5542 26 0 0 0 chr6 79944694 79944720 -102470522 + AT_rich Low_complexity Low_complexity 1 26 0 505 171 8 8 chr6 79946549 79946672 -102468570 + (TA)n Simple_repeat Simple_repeat 2 124 0 302 337 10 20 chr6 79947721 79947822 -102467420 + MIR3 SINE MIR 76 175 -33 211 271 0 0 chr6 79948240 79948288 -102466954 + (ATG)n Simple_repeat Simple_repeat 3 50 0 661 273 38 45 chr6 79948299 79948566 -102466676 + L2 LINE L2 3049 3313 0 193 328 47 0 chr6 79948967 79949031 -102466211 + MIR SINE MIR 39 105 -103 227 241 0 121 chr6 79949731 79949814 -102465428 - MIR3 SINE MIR -35 173 101 505 236 14 68 chr6 79950284 79950432 -102464810 + MLT1I LTR MaLR 1 140 -269 1974 131 0 28 chr6 79951327 79951652 -102463590 - AluSx SINE Alu 0 317 1 2109 126 3 0 chr6 79952565 79952867 -102462375 - AluSx SINE Alu -8 304 2 1558 245 165 6 chr6 79953011 79953538 -102461704 + L1ME3A LINE L1 5551 6161 -9 901 258 53 23 chr6 79954540 79954804 -102460438 - MER82 DNA MER2_type -1 652 381 680 144 27 0 chr6 79954845 79954956 -102460286 - FLAM_C SINE Alu -12 131 18 2007 189 13 13 chr6 79954963 79955349 -102459893 - MER82 DNA MER2_type -260 393 8 265 309 8 24 chr6 79955738 79955861 -102459381 - MIR3 SINE MIR 0 208 88 2044 119 6 29 chr6 79956140 79956451 -102458791 + AluSq SINE Alu 1 304 -9 248 311 38 38 chr6 79957376 79957482 -102457760 - L2 LINE L2 -4 3309 3204 562 236 0 0 chr6 79957650 79957760 -102457482 - FLAM_C SINE Alu -33 110 1 197 329 95 7 chr6 79957760 79957897 -102457345 + L2 LINE L2 1983 2131 -1183 228 122 0 0 chr6 79957979 79958020 -102457222 + (CA)n Simple_repeat Simple_repeat 2 42 0 422 192 0 0 chr6 79959236 79959314 -102455928 + MER116 DNA Mariner 3 80 0 1602 192 7 10 chr6 79959843 79960151 -102455091 + AluJo SINE Alu 5 311 -1 7258 41 14 0 chr6 79960411 79961860 -102453382 + L1PA5 LINE L1 4691 6150 -4 2497 69 0 18 chr6 79962225 79962557 -102452685 - L1PA8A LINE L1 0 6131 5806 227 336 28 28 chr6 79962760 79962867 -102452375 - MIR SINE MIR -62 146 40 354 123 46 0 chr6 79963125 79963190 -102452052 + L1MC1 LINE L1 6249 6316 -17 1144 205 20 0 chr6 79963995 79964195 -102451047 + MER58A DNA MER1_type 21 224 0 2115 106 14 3 chr6 79964608 79964900 -102450342 - AluSx SINE Alu -17 295 1 953 234 13 68 chr6 79967511 79967819 -102447423 + L2 LINE L2 3023 3313 0 407 345 79 0 chr6 79967830 79967995 -102447247 - L2 LINE L2 -38 3275 3098 32726 73 7 9 chr6 79968547 79974707 -102440535 - L1PA6 LINE L1 -6 6148 11 1355 201 13 38 chr6 79974788 79975102 -102440140 + AluJo SINE Alu 1 306 -6 2564 106 7 21 chr6 79975439 79975812 -102439430 + L1PA16 LINE L1 5409 5777 -389 2253 107 0 3 chr6 79975812 79976110 -102439132 + AluSg SINE Alu 1 297 -13 2564 106 7 21 chr6 79976110 79976162 -102439080 + L1PA16 LINE L1 5777 5828 -338 881 85 78 0 chr6 79977661 79977790 -102437452 + MER85 DNA T2_type 1 139 0 516 250 83 24 chr6 79978011 79978179 -102437063 - MIR SINE MIR -11 251 74 1319 187 28 1 chr6 79978191 79978500 -102436742 + L1PA16 LINE L1 5816 6161 0 41055 31 21 1 chr6 79978518 79984550 -102430692 - L1HS LINE L1 0 6155 1 656 338 52 34 chr6 79984771 79984950 -102430292 + L3 LINE CR1 120 294 -1283 2267 120 3 0 chr6 79984950 79985258 -102429984 + AluSq SINE Alu 1 309 -4 656 338 52 34 chr6 79985258 79985463 -102429779 + L3 LINE CR1 294 511 -1066 228 330 73 18 chr6 79985640 79985749 -102429493 + L3 LINE CR1 880 994 -583 208 296 19 19 chr6 79985903 79985957 -102429285 + L2 LINE L2 3134 3187 -85 537 359 65 25 chr6 79986633 79987065 -102428177 + L3 LINE CR1 1084 1532 -45 2391 91 0 25 chr6 79987356 79987674 -102427568 + AluY SINE Alu 1 310 -1 2419 74 0 7 chr6 79988316 79988613 -102426629 + AluY SINE Alu 1 295 -16 25 0 0 0 chr6 79989157 79989182 -102426060 + AT_rich Low_complexity Low_complexity 1 25 0 623 204 149 37 chr6 79989466 79989803 -102425439 - Charlie4a DNA MER1_type -7 501 131 184 277 0 0 chr6 79990398 79990445 -102424797 + L2 LINE L2 2343 2389 -925 1685 136 3 39 chr6 79991734 79992020 -102423222 + AluJo SINE Alu 35 310 -2 357 257 47 112 chr6 79992225 79992439 -102422803 + MIR SINE MIR 63 262 0 752 246 6 12 chr6 79992541 79992712 -102422530 - MER58A DNA MER1_type -54 170 1 24 53 0 0 chr6 79993221 79993259 -102421983 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 79995918 79995939 -102419303 + AT_rich Low_complexity Low_complexity 1 21 0 2117 140 0 3 chr6 79996232 79996539 -102418703 + AluSx SINE Alu 1 306 -6 370 275 78 42 chr6 79997139 79997281 -102417961 + MIR SINE MIR 2 148 -114 2807 161 22 10 chr6 79997282 79997784 -102417458 + L1MB3 LINE L1 20 527 -5857 * 9126 195 40 49 chr6 79997774 79998849 -102416393 + L1MB3 LINE L1 2021 3105 -3314 2184 131 0 7 chr6 79998849 79999154 -102416088 - AluSx SINE Alu -9 303 1 9126 195 40 49 chr6 79999154 80002519 -102412723 + L1MB3 LINE L1 3105 6418 -1 1225 38 0 38 chr6 80002547 80002707 -102412535 + L1PA10 LINE L1 6015 6168 0 266 292 94 0 chr6 80002731 80002827 -102412415 + MIR SINE MIR 137 241 -21 256 287 174 30 chr6 80003381 80003548 -102411694 - MIR SINE MIR -35 227 37 994 300 104 18 chr6 80005808 80006248 -102408994 - L2 LINE L2 0 3313 2836 282 331 41 33 chr6 80006929 80007050 -102408192 - L2 LINE L2 0 3272 3151 202 304 43 0 chr6 80008399 80008468 -102406774 - L2 LINE L2 0 3272 3201 4438 168 45 20 chr6 80009860 80010692 -102404550 - MER21B LTR ERV1 -11 852 1 308 325 37 43 chr6 80010850 80011013 -102404229 + L2 LINE L2 2922 3083 -189 242 345 55 27 chr6 80011125 80011235 -102404007 + L2 LINE L2 3187 3299 -14 410 295 72 39 chr6 80011240 80011447 -102403795 + L2 LINE L2 3050 3263 -50 1272 225 128 0 chr6 80012224 80012482 -102402760 + AluJo SINE Alu 3 293 -9 424 319 115 50 chr6 80012792 80013296 -102401946 - L2 LINE L2 -534 2780 2244 502 41 27 0 chr6 80014225 80014298 -102400944 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 2304 102 3 6 chr6 80015202 80015516 -102399726 + AluSq SINE Alu 1 313 0 666 294 127 37 chr6 80016047 80016581 -102398661 + L2 LINE L2 2727 3306 -7 643 227 58 17 chr6 80016606 80016778 -102398464 - MIR SINE MIR -21 241 63 2261 49 84 0 chr6 80019514 80019800 -102395442 + AluY SINE Alu 1 310 -1 319 327 176 13 chr6 80022033 80022192 -102393050 + L3 LINE CR1 1390 1574 -3 222 200 18 18 chr6 80022674 80022729 -102392513 + (TA)n Simple_repeat Simple_repeat 1 55 0 2349 92 0 3 chr6 80023283 80023588 -102391654 - AluY SINE Alu -6 305 2 183 338 75 0 chr6 80023718 80023798 -102391444 + MIR SINE MIR 56 141 -67 22 0 0 0 chr6 80024874 80024896 -102390346 + AT_rich Low_complexity Low_complexity 1 22 0 207 311 134 0 chr6 80025496 80025615 -102389627 - MIR SINE MIR -6 256 122 1921 152 56 48 chr6 80025634 80026010 -102389232 + MLT1B LTR MaLR 8 386 -4 214 368 37 98 chr6 80027501 80027849 -102387393 - L2 LINE L2 -1 3271 2945 2384 146 16 2 chr6 80027941 80028366 -102386876 - L1 LINE L1 -1646 4500 4070 1892 173 11 14 chr6 80028388 80028758 -102386484 - L1MA2 LINE L1 0 7723 7355 3109 57 0 0 chr6 80028758 80029142 -102386100 - L1PA5 LINE L1 -1 6153 5765 4190 122 14 63 chr6 80029149 80030220 -102385022 - L1MA2 LINE L1 -361 7363 6342 9702 155 88 21 chr6 80030320 80031418 -102383824 - L1MA2 LINE L1 -1608 5957 4934 2350 76 0 13 chr6 80031418 80031733 -102383509 - AluY SINE Alu 0 311 1 9702 155 88 21 chr6 80031733 80033650 -102381592 - L1MA2 LINE L1 -2631 4934 2702 2825 254 69 19 chr6 80033752 80034769 -102380473 - HAL1 LINE L1 -386 2121 1054 660 203 62 0 chr6 80034780 80034908 -102380334 - AluJo SINE Alu -175 137 2 355 311 39 73 chr6 80034909 80035115 -102380127 - HAL1 LINE L1 -1670 837 639 23 0 0 0 chr6 80035813 80035836 -102379406 + AT_rich Low_complexity Low_complexity 1 23 0 737 226 63 0 chr6 80036331 80036490 -102378752 + MER3 DNA MER1_type 41 209 0 24 53 0 0 chr6 80036954 80036992 -102378250 + AT_rich Low_complexity Low_complexity 1 38 0 342 470 134 19 chr6 80037287 80037555 -102377687 + AluY SINE Alu 1 299 -2 276 289 36 0 chr6 80039246 80039329 -102375913 - MIR SINE MIR -37 225 140 24 53 0 0 chr6 80040401 80040439 -102374803 + AT_rich Low_complexity Low_complexity 1 38 0 4972 173 28 73 chr6 80040560 80041765 -102373477 + L1PA14 LINE L1 3658 4808 -1338 180 0 0 0 chr6 80042969 80042989 -102372253 + (T)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr6 80043001 80043026 -102372216 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr6 80043747 80043768 -102371474 + AT_rich Low_complexity Low_complexity 1 21 0 2459 191 22 0 chr6 80047439 80047948 -102367294 - L1PA14 LINE L1 -850 5296 4777 5200 128 8 0 chr6 80047948 80048750 -102366492 + L1PA14 LINE L1 5312 6119 -42 1881 162 50 42 chr6 80048851 80049228 -102366014 + MSTA LTR MaLR 49 428 0 4803 184 21 4 chr6 80049230 80050206 -102365036 - L1 LINE L1 -1592 4554 3562 22 0 0 0 chr6 80050206 80050228 -102365014 + AT_rich Low_complexity Low_complexity 1 22 0 6137 32 0 4 chr6 80050228 80050957 -102364285 - L1PA5 LINE L1 -3 6151 5426 394 324 68 69 chr6 80051210 80051594 -102363648 + L2 LINE L2 2758 3139 -174 198 0 0 0 chr6 80051594 80051616 -102363626 + (TG)n Simple_repeat Simple_repeat 1 22 0 394 324 68 69 chr6 80051616 80051786 -102363456 + L2 LINE L2 3139 3308 -5 23 0 0 0 chr6 80053009 80053032 -102362210 + AT_rich Low_complexity Low_complexity 1 23 0 868 258 4 71 chr6 80053755 80053861 -102361381 + MER58A DNA MER1_type 1 112 -2308 1700 129 132 20 chr6 80053861 80054164 -102361078 - MER1B DNA MER1_type 0 337 1 868 258 4 71 chr6 80054164 80054297 -102360945 + MER58A DNA MER1_type 112 224 0 248 266 78 0 chr6 80054581 80054645 -102360597 + MER45B DNA AcHobo 259 327 -713 1236 208 84 17 chr6 80054661 80055008 -102360234 + MER45B DNA AcHobo 669 1038 -2 367 284 0 0 chr6 80056292 80056380 -102358862 + MIR SINE MIR 3 90 -172 848 343 107 26 chr6 80056469 80057431 -102357811 + L2 LINE L2 2275 3308 -5 2264 60 0 3 chr6 80057607 80057914 -102357328 - AluY SINE Alu 0 306 1 535 160 0 9 chr6 80058057 80058163 -102357079 - L1MA6 LINE L1 0 6300 6196 637 251 17 6 chr6 80058406 80058585 -102356657 + L1M4 LINE L1 4751 4931 -1215 385 353 103 17 chr6 80058940 80059172 -102356070 + LTR33 LTR ERVL 19 270 -251 33 85 0 0 chr6 80061033 80061115 -102354127 + AT_rich Low_complexity Low_complexity 1 82 0 427 304 50 0 chr6 80061125 80061286 -102353956 + MIR SINE MIR 94 262 0 39 60 0 0 chr6 80061426 80061493 -102353749 + AT_rich Low_complexity Low_complexity 1 67 0 256 314 119 8 chr6 80061493 80061611 -102353631 - L2 LINE L2 -1 3312 3182 1466 197 14 28 chr6 80063794 80064084 -102351158 + AluJo SINE Alu 3 288 -24 187 271 42 83 chr6 80064101 80064197 -102351045 - MIR SINE MIR -74 188 97 240 86 0 0 chr6 80064298 80064333 -102350909 + (T)n Simple_repeat Simple_repeat 1 35 0 514 276 28 7 chr6 80064508 80064653 -102350589 + MIR SINE MIR 76 223 -39 278 26 26 0 chr6 80064797 80064836 -102350406 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1972 46 73 4 chr6 80064837 80065096 -102350146 - AluY SINE Alu -34 277 1 23 33 0 0 chr6 80065346 80065376 -102349866 + AT_rich Low_complexity Low_complexity 1 30 0 1698 163 129 13 chr6 80066323 80066703 -102348539 + MSTA LTR MaLR 1 424 -4 404 217 0 0 chr6 80069752 80069835 -102345407 + L1 LINE L1 3503 3585 -2561 * 1163 15 0 0 chr6 80069826 80069958 -102345284 - L1PA4 LINE L1 -421 5733 5602 2246 33 0 0 chr6 80069959 80070231 -102345011 + L1PA4 LINE L1 5737 6008 -147 3240 188 41 31 chr6 80070331 80071240 -102344002 - L1 LINE L1 -1837 4309 3273 2263 71 0 19 chr6 80071685 80071993 -102343249 + AluY SINE Alu 1 302 -9 783 302 54 6 chr6 80072096 80072411 -102342831 + HAL1 LINE L1 4 333 -2174 868 56 0 0 chr6 80073027 80073134 -102342108 - SVA Other Other -258 1128 1022 1380 198 18 11 chr6 80073134 80073417 -102341825 + AluSx SINE Alu 25 309 -3 267 327 33 7 chr6 80073921 80074071 -102341171 + CT-rich Low_complexity Low_complexity 3 156 0 1867 99 22 77 chr6 80074168 80074480 -102340762 + AluSx SINE Alu 3 297 -15 760 128 22 22 chr6 80074480 80074659 -102340583 + (TA)n Simple_repeat Simple_repeat 2 180 0 689 123 53 6 chr6 80074580 80074751 -102340491 + (TATG)n Simple_repeat Simple_repeat 1 179 0 * 29 0 0 0 chr6 80075066 80075095 -102340147 + AT_rich Low_complexity Low_complexity 1 29 0 994 161 0 0 chr6 80075370 80075525 -102339717 + AluSg/x SINE Alu 143 297 -12 4460 119 1 23 chr6 80075511 80075525 -102339717 + L1PA14 LINE L1 5476 5489 -672 225 0 0 0 chr6 80075525 80075550 -102339692 + (TA)n Simple_repeat Simple_repeat 1 25 0 4460 119 1 23 chr6 80075550 80076234 -102339008 + L1PA14 LINE L1 5489 6159 -2 812 218 11 17 chr6 80076669 80076843 -102338399 - FRAM SINE Alu -3 173 1 1959 121 29 0 chr6 80076855 80077172 -102338070 - AluSx SINE Alu 0 327 3 538 257 80 23 chr6 80077510 80077685 -102337557 + MLT1L LTR MaLR 142 326 -289 21 0 0 0 chr6 80078170 80078191 -102337051 + AT_rich Low_complexity Low_complexity 1 21 0 1430 184 3 33 chr6 80078748 80079053 -102336189 - AluJb SINE Alu -16 296 1 801 256 43 18 chr6 80079156 80079433 -102335809 - MER58B DNA MER1_type -8 333 50 325 250 50 29 chr6 80079471 80079611 -102335631 + L1MC/D LINE L1 4741 4883 -1263 1738 172 0 26 chr6 80079696 80079998 -102335244 + AluJo SINE Alu 1 294 -18 330 250 42 0 chr6 80080492 80080588 -102334654 + L1MC/D LINE L1 5380 5479 -2329 2165 112 10 3 chr6 80080595 80080891 -102334351 - AluSq SINE Alu -15 298 1 1562 158 44 20 chr6 80080937 80081235 -102334007 - AluSg SINE Alu -5 305 1 2140 124 3 6 chr6 80081310 80081624 -102333618 - AluSp SINE Alu 0 313 1 492 227 59 0 chr6 80081671 80081790 -102333452 + L2 LINE L2 2502 2627 -687 2317 76 13 7 chr6 80083357 80083659 -102331583 + AluY SINE Alu 1 304 -7 2371 79 0 22 chr6 80083664 80083982 -102331260 + AluY SINE Alu 1 311 0 760 148 190 0 chr6 80083983 80084125 -102331117 + AluSq SINE Alu 135 303 -10 2277 91 0 10 chr6 80085023 80085320 -102329922 + AluSg SINE Alu 1 294 -16 417 333 40 53 chr6 80085585 80085620 -102329622 - MER89-int LTR ERV1 -173 6628 6594 2230 118 0 0 chr6 80085620 80085933 -102329309 + AluSq SINE Alu 1 313 0 417 333 40 53 chr6 80085933 80086429 -102328813 - MER89-int LTR ERV1 -207 6594 6104 27 49 0 0 chr6 80086473 80086514 -102328728 + AT_rich Low_complexity Low_complexity 1 41 0 838 248 55 14 chr6 80086786 80087004 -102328238 + AluJo SINE Alu 66 292 -20 1958 144 10 13 chr6 80087113 80087411 -102327831 + AluSq SINE Alu 1 297 -16 1408 152 133 30 chr6 80087451 80087714 -102327528 - AluSx SINE Alu -22 290 1 498 287 80 75 chr6 80088201 80088335 -102326907 - MER89-int LTR ERV1 -2126 2521 2389 2204 110 0 13 chr6 80088335 80088643 -102326599 - AluSq SINE Alu -5 308 5 498 287 80 75 chr6 80088643 80088895 -102326347 - MER89-int LTR ERV1 -2258 2389 2133 283 236 57 132 chr6 80088905 80089055 -102326187 - MER89-int LTR ERV1 -2776 4025 3894 1815 139 7 7 chr6 80089055 80089403 -102325839 - AluSx SINE Alu 0 312 1 283 236 57 132 chr6 80089403 80089464 -102325778 - MER89-int LTR ERV1 -2907 3894 3830 28 0 0 0 chr6 80089518 80089546 -102325696 + AT_rich Low_complexity Low_complexity 1 28 0 2362 80 3 0 chr6 80089750 80090049 -102325193 - AluSp SINE Alu -13 300 1 23 0 0 0 chr6 80090056 80090079 -102325163 + AT_rich Low_complexity Low_complexity 1 23 0 846 80 0 0 chr6 80090530 80090642 -102324600 + AluSc SINE Alu 196 307 -2 282 79 0 0 chr6 80090651 80090689 -102324553 - AluSp/q SINE Alu -9 294 257 6146 97 8 5 chr6 80090695 80091666 -102323576 + L1PA14 LINE L1 5161 6142 -19 1725 157 6 69 chr6 80092112 80092444 -102322798 - AluJo SINE Alu -1 311 1 572 263 74 17 chr6 80092785 80092960 -102322282 + MLT1L LTR MaLR 142 326 -289 1485 167 33 22 chr6 80093519 80093789 -102321453 - AluJo SINE Alu -39 273 1 336 237 46 40 chr6 80093858 80094010 -102321232 - L1M4 LINE L1 -1253 4893 4741 4691 71 7 3 chr6 80094045 80094651 -102320591 - L1PA8 LINE L1 0 6172 5565 2311 112 0 0 chr6 80094690 80094993 -102320249 - AluSq SINE Alu -10 303 1 891 234 42 0 chr6 80094999 80095238 -102320004 + MER58B DNA MER1_type 85 333 -8 2091 112 36 20 chr6 80095338 80095641 -102319601 - AluSx SINE Alu -3 309 2 21 0 0 0 chr6 80095647 80095668 -102319574 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 80095984 80096006 -102319236 + AT_rich Low_complexity Low_complexity 1 22 0 1717 177 21 0 chr6 80096059 80096347 -102318895 + AluJo SINE Alu 1 294 -18 327 300 26 64 chr6 80096364 80096677 -102318565 + L1MC4a LINE L1 4930 5230 -916 1552 251 112 33 chr6 80096704 80097355 -102317887 + L1MC4a LINE L1 5258 5934 -244 2035 152 3 0 chr6 80097736 80098039 -102317203 - AluSx SINE Alu -3 309 6 1917 142 30 3 chr6 80098146 80098441 -102316801 + AluSx SINE Alu 1 303 -9 2414 71 0 0 chr6 80098722 80099038 -102316204 + AluY SINE Alu 1 316 0 1314 181 58 15 chr6 80099190 80099490 -102315752 - AluSg SINE Alu 0 319 9 469 227 59 0 chr6 80099599 80099718 -102315524 + L2 LINE L2 2502 2627 -687 215 286 59 50 chr6 80099706 80099825 -102315417 - L2 LINE L2 -890 2424 2305 * 222 37 0 0 chr6 80099932 80099959 -102315283 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 332 336 59 53 chr6 80102462 80102950 -102312292 - MER89-int LTR ERV1 -243 6558 6068 27 49 0 0 chr6 80102990 80103031 -102312211 + AT_rich Low_complexity Low_complexity 1 41 0 1246 171 23 109 chr6 80103487 80103791 -102311451 + AluJo SINE Alu 5 282 -30 600 259 68 81 chr6 80104388 80104782 -102310460 - MER89-int LTR ERV1 -2126 2521 2133 398 328 48 86 chr6 80104792 80105372 -102309870 - MER89-int LTR ERV1 -2776 4025 3468 2317 109 3 0 chr6 80105837 80106140 -102309102 - AluSq SINE Alu -9 304 1 202 200 0 67 chr6 80106161 80106221 -102309021 - L2 LINE L2 -757 2557 2502 2333 96 3 3 chr6 80106437 80106738 -102308504 + AluSx SINE Alu 1 301 -11 366 46 46 0 chr6 80107218 80107283 -102307959 + (TC)n Simple_repeat Simple_repeat 1 68 0 180 111 0 0 chr6 80107807 80107834 -102307408 + (A)n Simple_repeat Simple_repeat 1 27 0 700 122 52 26 chr6 80108042 80108157 -102307085 + FRAM SINE Alu 39 156 -20 882 216 0 0 chr6 80108615 80108777 -102306465 - FRAM SINE Alu -4 162 1 460 267 103 12 chr6 80109118 80109283 -102305959 + MLT1L LTR MaLR 142 321 -294 1927 101 61 11 chr6 80109712 80109989 -102305253 - AluSx SINE Alu -21 291 1 21 82 0 0 chr6 80110597 80110646 -102304596 + AT_rich Low_complexity Low_complexity 1 49 0 789 191 0 11 chr6 80110648 80110884 -102304358 - AluJb SINE Alu -1 311 3 1873 168 0 3 chr6 80110904 80111207 -102304035 - AluJb SINE Alu -10 302 1 896 222 56 52 chr6 80111308 80111391 -102303851 - MER58B DNA MER1_type -2087 333 252 1822 161 0 23 chr6 80111391 80111695 -102303547 + AluSx SINE Alu 1 297 -15 896 222 56 52 chr6 80111695 80111899 -102303343 - MER58B DNA MER1_type -2168 252 45 236 263 11 21 chr6 80111989 80112084 -102303158 + L1M4 LINE L1 4799 4892 -1254 2332 92 7 0 chr6 80112138 80112443 -102302799 + AluY SINE Alu 2 308 -3 1625 184 3 27 chr6 80112480 80112806 -102302436 + AluJo SINE Alu 1 312 0 29 28 0 0 chr6 80112820 80112856 -102302386 + AT_rich Low_complexity Low_complexity 1 36 0 2172 104 0 3 chr6 80113041 80113328 -102301914 + AluSx SINE Alu 1 286 -26 387 0 0 0 chr6 80113331 80113374 -102301868 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 328 249 109 36 chr6 80113376 80113569 -102301673 + L1MC4a LINE L1 5799 6005 -1803 2314 99 0 3 chr6 80113580 80113884 -102301358 + AluY SINE Alu 1 303 -8 2196 111 3 19 chr6 80114074 80114381 -102300861 - AluSx SINE Alu -10 302 1 2294 118 0 0 chr6 80114484 80114789 -102300453 + AluSx SINE Alu 1 305 -7 382 209 0 35 chr6 80115069 80115155 -102300087 - L2 LINE L2 0 3313 3231 1849 172 3 3 chr6 80115879 80116176 -102299066 + AluJo SINE Alu 5 301 -11 2230 80 22 0 chr6 80116265 80116562 -102298680 - AluSc SINE Alu 0 303 1 1146 191 20 130 chr6 80116691 80116839 -102298403 + AluYb8 SINE Alu 1 91 -217 2309 89 3 3 chr6 80116839 80117132 -102298110 + AluSx SINE Alu 2 294 -18 1146 191 20 130 chr6 80117132 80117328 -102297914 + AluYb8 SINE Alu 91 307 -1 318 241 93 9 chr6 80117580 80117688 -102297554 + MIR SINE MIR 81 197 -65 1027 175 23 0 chr6 80118159 80118330 -102296912 - FAM SINE Alu 0 175 1 288 286 0 0 chr6 80119228 80119298 -102295944 + L2 LINE L2 3244 3313 0 375 267 135 50 chr6 80119500 80119818 -102295424 - L1ME LINE L1 -559 5603 5259 2160 115 30 0 chr6 80120030 80120326 -102294916 + AluSx SINE Alu 1 305 -7 1633 162 3 49 chr6 80120357 80120501 -102294741 + AluJb SINE Alu 1 125 -187 2434 84 0 0 chr6 80120501 80120797 -102294445 + AluSg SINE Alu 1 296 -14 1633 162 3 49 chr6 80120797 80120960 -102294282 + AluJb SINE Alu 125 294 -18 889 246 31 9 chr6 80120960 80121184 -102294058 + MIR SINE MIR 24 252 -10 249 33 0 0 chr6 80121909 80121939 -102293303 + (CGG)n Simple_repeat Simple_repeat 2 31 0 1867 160 0 0 chr6 80122770 80123051 -102292191 + AluJo SINE Alu 1 281 -31 1826 104 4 0 chr6 80124166 80124406 -102290836 + AluSg/x SINE Alu 65 305 -7 801 162 0 0 chr6 80124658 80124775 -102290467 + AluJo/FLAM SINE Alu 1 117 -195 307 136 15 98 chr6 80124775 80124862 -102290380 - Alu SINE Alu -7 295 242 260 216 0 40 chr6 80125144 80125218 -102290024 - MIR SINE MIR -3 259 189 2872 160 49 29 chr6 80125346 80125761 -102289481 + L1M3 LINE L1 4857 5262 -918 678 210 8 0 chr6 80125761 80125885 -102289357 + FLAM_A SINE Alu 1 125 -8 2872 160 49 29 chr6 80125885 80126051 -102289191 + L1M3 LINE L1 5262 5423 -757 2188 131 0 10 chr6 80126051 80126363 -102288879 + AluSx SINE Alu 1 309 -3 2872 160 49 29 chr6 80126363 80126694 -102288548 + L1M3 LINE L1 5423 5810 -370 1514 87 5 10 chr6 80126694 80126901 -102288341 - AluSp SINE Alu -17 296 91 4010 138 104 31 chr6 80126901 80128291 -102286951 - pTR5 LTR ERV1 0 2606 1524 663 118 0 0 chr6 80128291 80128384 -102286858 - AluSp SINE Alu -219 94 2 25 0 0 0 chr6 80128570 80128595 -102286647 + AT_rich Low_complexity Low_complexity 1 25 0 1642 169 0 28 chr6 80128619 80128930 -102286312 - AluJo SINE Alu 0 303 1 398 346 29 19 chr6 80128965 80129170 -102286072 - L1M4 LINE L1 -1216 4930 4724 635 178 0 0 chr6 80129242 80129349 -102285893 + AluSg/x SINE Alu 200 306 -6 440 245 19 0 chr6 80129352 80129458 -102285784 - MLT1C LTR MaLR -359 108 1 2264 82 0 16 chr6 80129529 80129844 -102285398 - AluSg SINE Alu 0 310 1 377 236 0 22 chr6 80129904 80129993 -102285249 - MER112 DNA MER1_type -6 254 168 1906 123 7 23 chr6 80130049 80130359 -102284883 - AluSg SINE Alu -3 307 3 2139 104 0 3 chr6 80130466 80130764 -102284478 + AluSx SINE Alu 1 297 -15 552 224 18 65 chr6 80130952 80131017 -102284225 - MER110 LTR ERV1 -20 471 404 1691 92 114 15 chr6 80131017 80131289 -102283953 - AluSg SINE Alu -11 299 1 552 224 18 65 chr6 80131289 80131348 -102283894 - MER110 LTR ERV1 -87 404 355 1917 143 3 3 chr6 80131348 80131649 -102283593 + AluSx SINE Alu 1 301 -11 552 224 18 65 chr6 80131649 80131693 -102283549 - MER110 LTR ERV1 -136 355 310 2404 83 0 0 chr6 80131701 80132013 -102283229 - AluSx SINE Alu 0 312 1 207 0 0 0 chr6 80132015 80132038 -102283204 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2168 92 0 0 chr6 80132038 80132322 -102282920 - AluSx SINE Alu -28 284 1 26 50 0 0 chr6 80132332 80132372 -102282870 + AT_rich Low_complexity Low_complexity 1 40 0 2262 77 0 10 chr6 80132389 80132689 -102282553 + AluY SINE Alu 1 297 -14 1315 206 53 4 chr6 80132691 80132972 -102282270 + AluJo SINE Alu 1 295 -17 408 175 135 16 chr6 80133027 80133153 -102282089 - Charlie1 DNA MER1_type -180 2581 2441 1732 118 123 26 chr6 80133281 80133621 -102281621 + THE1C LTR MaLR 3 375 0 2224 101 10 0 chr6 80133925 80134232 -102281010 + AluSp SINE Alu 1 310 -3 2061 89 3 17 chr6 80134765 80135057 -102280185 + AluSg SINE Alu 1 288 -22 1973 143 0 19 chr6 80135059 80135373 -102279869 + AluSx SINE Alu 1 308 -4 838 215 6 0 chr6 80135374 80135532 -102279710 + AluJb SINE Alu 135 293 -19 21 36 0 0 chr6 80135718 80135746 -102279496 + AT_rich Low_complexity Low_complexity 1 28 0 2036 115 10 0 chr6 80136041 80136337 -102278905 + AluSx SINE Alu 1 299 -13 1262 181 23 65 chr6 80136424 80136734 -102278508 + AluJo SINE Alu 1 297 -15 1924 91 39 52 chr6 80136865 80137172 -102278070 - AluSx SINE Alu -9 303 1 882 126 0 0 chr6 80137243 80137370 -102277872 - FLAM_C SINE Alu -7 136 10 1173 122 71 0 chr6 80137521 80137718 -102277524 + Tigger7 DNA MER2_type 2281 2491 0 1804 126 38 7 chr6 80137985 80138278 -102276964 + AluSx SINE Alu 6 307 -5 1676 151 27 10 chr6 80138431 80138729 -102276513 - AluJo SINE Alu -9 303 1 22 35 0 0 chr6 80138977 80139006 -102276236 + AT_rich Low_complexity Low_complexity 1 29 0 1625 162 13 29 chr6 80139008 80139316 -102275926 - AluJb SINE Alu -9 303 1 2137 110 3 10 chr6 80139364 80139673 -102275569 - AluSp SINE Alu -6 307 1 983 118 0 0 chr6 80139780 80139915 -102275327 + AluSq/x SINE Alu 1 135 -177 1961 116 24 0 chr6 80139915 80140208 -102275034 + AluSx SINE Alu 1 300 -12 1859 101 86 7 chr6 80140212 80140490 -102274752 + AluSq SINE Alu 3 302 -11 2528 130 138 39 chr6 80140493 80140789 -102274453 - L1MC3 LINE L1 -31 7754 7489 2124 124 0 0 chr6 80140789 80141088 -102274154 + AluSx SINE Alu 1 299 -13 2528 130 138 39 chr6 80141088 80141193 -102274049 - L1MC3 LINE L1 -296 7489 7396 4615 111 25 15 chr6 80141193 80141877 -102273365 + LTR8 LTR ERV1 1 691 0 2528 130 138 39 chr6 80141877 80141967 -102273275 - L1MC3 LINE L1 -389 7396 7213 306 256 17 51 chr6 80141967 80142084 -102273158 - MLT1F1 LTR MaLR -420 147 35 425 116 128 0 chr6 80142084 80142170 -102273072 - L1MC3 LINE L1 -688 7097 7001 392 202 141 0 chr6 80142174 80142273 -102272969 - L1M4 LINE L1 -2913 3233 3121 536 136 50 136 chr6 80142278 80142418 -102272824 - AluJb SINE Alu -180 132 5 781 93 0 0 chr6 80142486 80142594 -102272648 - AluSx SINE Alu -4 305 198 947 90 8 0 chr6 80142594 80142727 -102272515 - AluSx SINE Alu -177 135 2 1960 184 92 122 chr6 80142792 80143541 -102271701 + LTR8A LTR ERV1 1 727 0 2121 96 0 0 chr6 80143707 80143988 -102271254 - AluSq SINE Alu -22 291 11 2207 99 0 7 chr6 80144185 80144487 -102270755 - AluSx SINE Alu -12 300 1 1352 7 0 0 chr6 80144506 80144656 -102270586 - L1HS LINE L1 0 6155 6006 2017 139 0 3 chr6 80145453 80145754 -102269488 + AluSx SINE Alu 1 300 -12 1344 297 77 2 chr6 80145768 80146199 -102269043 + HERV16 LTR ERVL 1003 1465 -3531 3372 248 62 14 chr6 80146269 80147188 -102268054 + HERV16 LTR ERVL 1624 2586 -2410 2092 124 0 0 chr6 80147193 80147484 -102267758 + AluSx SINE Alu 1 291 -21 793 184 17 39 chr6 80147495 80147674 -102267568 + FAM SINE Alu 1 175 0 2088 138 0 0 chr6 80147905 80148217 -102267025 + AluSx SINE Alu 1 312 0 1817 141 17 3 chr6 80148235 80148533 -102266709 + AluSx SINE Alu 10 311 -1 1942 119 9 38 chr6 80148534 80148673 -102266569 + AluSc SINE Alu 1 142 -167 2741 13 0 0 chr6 80148673 80148983 -102266259 + AluYb8 SINE Alu 1 310 -8 1942 119 9 38 chr6 80148983 80149161 -102266081 + AluSc SINE Alu 142 309 0 689 204 0 8 chr6 80150348 80150480 -102264762 - FLAM_C SINE Alu -10 133 3 787 172 0 77 chr6 80150612 80150781 -102264461 + L1PB4 LINE L1 5994 6149 -7 291 133 33 33 chr6 80152293 80152353 -102262889 - L1MD2 LINE L1 -12 6347 6288 1149 168 45 0 chr6 80152353 80152555 -102262687 + AluSx SINE Alu 1 211 -101 2292 82 3 7 chr6 80152578 80152884 -102262358 + AluSx SINE Alu 1 305 -7 401 171 67 38 chr6 80152887 80152992 -102262250 + AluJo SINE Alu 31 138 -164 254 277 116 9 chr6 80153002 80153114 -102262128 + L2 LINE L2 3130 3253 -60 261 304 29 0 chr6 80153129 80153198 -102262044 + L2 LINE L2 3200 3270 -43 188 280 0 20 chr6 80153234 80153284 -102261958 + L2 LINE L2 3259 3307 -6 22 0 0 0 chr6 80153506 80153528 -102261714 + AT_rich Low_complexity Low_complexity 1 22 0 2737 132 9 21 chr6 80153545 80153739 -102261503 + MSTA LTR MaLR 1 196 -232 1525 182 7 3 chr6 80153739 80154030 -102261212 + AluJo SINE Alu 13 304 -8 2737 132 9 21 chr6 80154030 80154266 -102260976 + MSTA LTR MaLR 196 426 -2 781 121 17 9 chr6 80154276 80154392 -102260850 + FLAM_C SINE Alu 2 118 -25 2200 105 0 0 chr6 80154419 80154715 -102260527 + AluSx SINE Alu 1 296 -16 2248 90 0 0 chr6 80154715 80155015 -102260227 + AluSx SINE Alu 1 300 -12 1856 150 14 0 chr6 80155028 80155315 -102259927 + AluSx SINE Alu 1 291 -21 1945 136 3 0 chr6 80155759 80156046 -102259196 - AluSx SINE Alu -14 298 11 541 283 22 75 chr6 80156081 80156481 -102258761 - L1MC4a LINE L1 -1896 5912 5534 1159 136 146 0 chr6 80156819 80157025 -102258217 + AluSx SINE Alu 56 291 -21 2198 92 10 0 chr6 80157279 80157584 -102257658 - AluSx SINE Alu -4 308 1 807 153 0 0 chr6 80157607 80157731 -102257511 - FRAM SINE Alu -30 146 23 286 301 164 22 chr6 80158838 80159253 -102255989 + L2 LINE L2 2168 2641 -673 395 248 121 21 chr6 80159361 80159502 -102255740 + L2 LINE L2 3116 3270 -2 2460 27 10 13 chr6 80159787 80160087 -102255155 + AluY SINE Alu 1 299 -12 1637 141 27 27 chr6 80160479 80160777 -102254465 - AluJo SINE Alu -10 302 5 2083 129 3 6 chr6 80160860 80161171 -102254071 + AluSg SINE Alu 1 310 0 1333 163 14 5 chr6 80161191 80161412 -102253830 - Tigger3(Golem) DNA MER2_type 0 3038 2816 977 197 33 19 chr6 80161389 80161602 -102253640 - Tigger3(Golem) DNA MER2_type -2802 227 12 * 1165 161 32 44 chr6 80161602 80161647 -102253595 + L1MA8 LINE L1 5785 5829 -462 2141 110 0 0 chr6 80161647 80161946 -102253296 + AluSx SINE Alu 1 299 -13 1165 161 32 44 chr6 80161946 80162148 -102253094 + L1MA8 LINE L1 5829 6029 -262 * 2156 232 116 18 chr6 80162138 80162749 -102252493 + L1MC4a LINE L1 7015 7709 -99 2117 116 0 0 chr6 80162749 80163050 -102252192 + AluSx SINE Alu 1 301 -11 2156 232 116 18 chr6 80163050 80163161 -102252081 + L1MC4a LINE L1 7709 7808 0 811 105 0 9 chr6 80163335 80163449 -102251793 - FLAM_C SINE Alu -25 118 6 1915 138 0 14 chr6 80163808 80164099 -102251143 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr6 80164099 80164123 -102251119 + AT_rich Low_complexity Low_complexity 1 24 0 484 309 97 5 chr6 80164223 80164424 -102250818 + MIR SINE MIR 20 244 -18 2167 91 3 0 chr6 80164522 80164809 -102250433 - AluSx SINE Alu -24 288 1 2000 82 0 11 chr6 80165577 80165844 -102249398 + AluSc SINE Alu 1 264 -45 2007 96 14 0 chr6 80165999 80166290 -102248952 + AluSg1 SINE Alu 1 295 -14 23 0 0 0 chr6 80166290 80166313 -102248929 + AT_rich Low_complexity Low_complexity 1 23 0 687 172 14 158 chr6 80166631 80166742 -102248500 - MER5A DNA MER1_type -3 186 61 2100 98 0 29 chr6 80166742 80166921 -102248321 - AluSx SINE Alu -4 308 140 2370 73 0 0 chr6 80166921 80167224 -102248018 - AluY SINE Alu -8 303 1 2100 98 0 29 chr6 80167224 80167360 -102247882 - AluSx SINE Alu -172 140 2 1611 113 67 14 chr6 80167360 80167643 -102247599 - AluJb SINE Alu -12 300 3 687 172 14 158 chr6 80167643 80167672 -102247570 - MER5A DNA MER1_type -127 62 81 1932 97 37 0 chr6 80167672 80167970 -102247272 - AluSx SINE Alu -2 310 2 687 172 14 158 chr6 80167970 80168036 -102247206 - MER5A DNA MER1_type -107 82 8 18342 44 3 0 chr6 80169358 80171632 -102243610 - L1PA5 LINE L1 -1805 4341 2061 8482 47 2 2 chr6 80171632 80173435 -102241807 + L1PA5 LINE L1 4348 6154 0 319 275 122 0 chr6 80174334 80174465 -102240777 + MIR SINE MIR 7 153 -109 1119 178 5 5 chr6 80174975 80175183 -102240059 + MER3 DNA MER1_type 1 208 -1 1651 145 0 74 chr6 80175423 80175748 -102239494 + AluJb SINE Alu 3 303 -9 269 260 236 8 chr6 80175810 80175937 -102239305 - MLT1I LTR MaLR -56 353 198 2258 172 39 93 chr6 80176108 80176569 -102238673 + L1MC3 LINE L1 5767 6113 -1672 2101 120 0 0 chr6 80176569 80176868 -102238374 + AluY SINE Alu 1 299 -12 2258 172 39 93 chr6 80176868 80177070 -102238172 + L1MC3 LINE L1 6113 6324 -1461 1570 131 67 82 chr6 80177082 80177217 -102238025 + MER44D DNA MER2_type 2 137 -2354 2075 128 48 31 chr6 80177217 80177575 -102237667 - THE1B LTR MaLR 0 364 1 1570 131 67 82 chr6 80177575 80177649 -102237593 + MER44D DNA MER2_type 137 211 -2280 1812 156 3 0 chr6 80177649 80177938 -102237304 + AluSx SINE Alu 1 290 -22 195 42 0 0 chr6 80177938 80177962 -102237280 + (GGAGA)n Simple_repeat Simple_repeat 5 28 0 1570 131 67 82 chr6 80177962 80178093 -102237149 + MER44D DNA MER2_type 209 609 0 938 137 0 53 chr6 80178093 80178283 -102236959 + L1MC3 LINE L1 6393 6572 -1213 1388 134 0 5 chr6 80178283 80178500 -102236742 + AluSg/x SINE Alu 96 311 -1 1794 155 57 114 chr6 80178500 80178536 -102236706 + L1MC3 LINE L1 6610 6646 -1139 1537 105 0 0 chr6 80178536 80178745 -102236497 - AluSq SINE Alu -14 299 91 1794 155 57 114 chr6 80178745 80178962 -102236280 + L1MC3 LINE L1 6646 6874 -911 1968 140 3 0 chr6 80178962 80179255 -102235987 + AluSx SINE Alu 1 294 -18 1794 155 57 114 chr6 80179255 80179327 -102235915 + L1MC3 LINE L1 6874 6949 -836 2293 80 3 0 chr6 80179327 80179627 -102235615 - AluSg SINE Alu -9 301 1 1794 155 57 114 chr6 80179627 80179808 -102235434 + L1MC3 LINE L1 6949 7089 -696 303 304 10 0 chr6 80179815 80179917 -102235325 + MLT1F1 LTR MaLR 35 137 -430 1051 129 31 62 chr6 80179919 80180042 -102235200 + L1MC3 LINE L1 7202 7318 -467 1654 152 17 40 chr6 80180042 80180186 -102235056 + AluSx SINE Alu 1 147 -165 2372 47 0 7 chr6 80180186 80180485 -102234757 + AluY SINE Alu 1 297 -14 1654 152 17 40 chr6 80180485 80180642 -102234600 + AluSx SINE Alu 147 295 -17 1051 129 31 62 chr6 80180642 80180712 -102234530 + L1MC3 LINE L1 7318 7389 -396 2410 83 0 0 chr6 80180712 80181025 -102234217 + AluSp SINE Alu 1 313 0 1934 113 0 0 chr6 80181134 80181399 -102233843 + AluSg SINE Alu 1 265 -45 308 198 77 22 chr6 80181413 80181504 -102233738 + L1MC3 LINE L1 7664 7759 -26 1275 154 0 75 chr6 80182533 80182786 -102232456 - AluJo SINE Alu -74 238 5 23 33 0 0 chr6 80183030 80183060 -102232182 + AT_rich Low_complexity Low_complexity 1 30 0 805 152 0 8 chr6 80183080 80183205 -102232037 + FLAM_C SINE Alu 1 124 -19 33 0 0 0 chr6 80183206 80183239 -102232003 + AT_rich Low_complexity Low_complexity 1 33 0 353 226 195 6 chr6 80183239 80183398 -102231844 + L1MC5 LINE L1 7743 7931 -30 27 0 0 0 chr6 80183398 80183425 -102231817 + AT_rich Low_complexity Low_complexity 1 27 0 2279 83 7 3 chr6 80183436 80183738 -102231504 + AluY SINE Alu 2 304 -7 2044 133 3 0 chr6 80183864 80184165 -102231077 + AluSx SINE Alu 3 304 -8 2232 93 10 0 chr6 80184263 80184565 -102230677 + AluSq SINE Alu 1 305 -8 2105 100 0 0 chr6 80184964 80185281 -102229961 + AluSg SINE Alu 1 317 0 2194 99 0 10 chr6 80185891 80186194 -102229048 + AluSq SINE Alu 1 300 -13 1014 158 0 0 chr6 80186194 80186359 -102228883 + AluSq SINE Alu 134 298 -15 2250 103 0 0 chr6 80187027 80187339 -102227903 + AluSx SINE Alu 1 312 0 713 232 21 32 chr6 80188213 80188403 -102226839 - AluJo SINE Alu -3 309 122 202 361 62 8 chr6 80188510 80188640 -102226602 + L2 LINE L2 2433 2569 -745 2048 118 0 35 chr6 80188907 80189042 -102226200 + AluSx SINE Alu 1 139 -173 2279 86 0 19 chr6 80189042 80189357 -102225885 + AluSc SINE Alu 1 309 0 2048 118 0 35 chr6 80189357 80189535 -102225707 + AluSx SINE Alu 139 303 -9 1814 148 16 29 chr6 80189961 80190272 -102224970 + AluSx SINE Alu 1 307 -5 816 243 0 0 chr6 80190272 80190445 -102224797 + AluJo/FRAM SINE Alu 134 306 -6 233 139 0 0 chr6 80190619 80190655 -102224587 - MER53 DNA DNA -1 188 153 390 21 0 0 chr6 80190758 80190805 -102224437 + (CA)n Simple_repeat Simple_repeat 2 48 0 230 306 71 0 chr6 80190839 80190999 -102224243 + L1M1 LINE L1 5272 5440 -711 226 190 0 35 chr6 80191001 80191059 -102224183 + L1M4 LINE L1 4697 4752 -1394 1312 109 0 0 chr6 80191070 80191253 -102223989 + AluSg/x SINE Alu 110 292 -18 264 30 0 0 chr6 80191253 80191286 -102223956 + (CA)n Simple_repeat Simple_repeat 2 34 0 1303 33 0 0 chr6 80192113 80192263 -102222979 - HERVK LTR ERVK -97 7146 6997 296 339 90 41 chr6 80192349 80192594 -102222648 + L1MC4 LINE L1 5501 5757 -2051 1793 154 7 3 chr6 80192622 80192914 -102222328 + AluSx SINE Alu 1 293 -19 1919 108 4 4 chr6 80192918 80193234 -102222008 + AluSg SINE Alu 3 318 0 2409 63 0 3 chr6 80193236 80193539 -102221703 + AluY SINE Alu 3 304 -7 1839 157 7 0 chr6 80193659 80193964 -102221278 + AluJb SINE Alu 1 307 -5 1661 148 27 27 chr6 80194039 80194337 -102220905 + AluJb SINE Alu 1 298 -14 1979 100 0 24 chr6 80194370 80194685 -102220557 + AluY SINE Alu 1 308 0 667 188 53 126 chr6 80194686 80194761 -102220481 + L1MC4 LINE L1 6272 6351 -1691 2374 50 0 7 chr6 80194761 80195061 -102220181 + AluY SINE Alu 1 298 -13 667 188 53 126 chr6 80195061 80195287 -102219955 + L1MC4 LINE L1 6351 8042 0 614 121 0 0 chr6 80195340 80195423 -102219819 + AluJ/FLAM SINE Alu 2 84 -228 1978 97 38 0 chr6 80195436 80195724 -102219518 + AluSg1 SINE Alu 2 300 -9 429 156 0 0 chr6 80195736 80195800 -102219442 - AluJ/FLAM SINE Alu -243 69 6 595 219 36 12 chr6 80195805 80196052 -102219190 + HAL1b LINE L1 945 1314 -34 203 0 37 0 chr6 80196189 80196216 -102219026 + (TG)n Simple_repeat Simple_repeat 2 29 0 1961 121 0 23 chr6 80196327 80196632 -102218610 + AluSq SINE Alu 1 298 -15 802 128 0 0 chr6 80196762 80196879 -102218363 - AluSp/q SINE Alu -15 298 182 797 209 31 21 chr6 80196865 80197056 -102218186 - AluSp SINE Alu -17 296 104 * 359 186 0 0 chr6 80197058 80197117 -102218125 - AluSg/x SINE Alu -35 265 207 297 126 56 0 chr6 80197218 80197289 -102217953 - Alu SINE Alu -258 45 1 2112 115 3 0 chr6 80197291 80197587 -102217655 + AluSx SINE Alu 1 297 -15 279 139 0 0 chr6 80197613 80197656 -102217586 + FRAM/FAM SINE Alu 40 82 -84 616 239 22 8 chr6 80197659 80197793 -102217449 - AluJo SINE Alu -59 253 118 1467 218 115 30 chr6 80197795 80198198 -102217044 - L1M4 LINE L1 -2409 3737 3370 1826 159 10 0 chr6 80198198 80198507 -102216735 - AluJb SINE Alu 0 312 1 1467 218 115 30 chr6 80198507 80198675 -102216567 - L1M4 LINE L1 -2776 3370 3110 2039 122 3 3 chr6 80198675 80198971 -102216271 - AluSx SINE Alu -16 296 1 1467 218 115 30 chr6 80198971 80199000 -102216242 - L1M4 LINE L1 -3036 3110 3085 1640 146 66 7 chr6 80199186 80199474 -102215768 + AluSx SINE Alu 1 305 -7 860 148 0 21 chr6 80199505 80199647 -102215595 + AluJo SINE Alu 35 173 -139 1766 159 0 46 chr6 80199664 80199809 -102215433 + AluJb SINE Alu 1 151 -161 2302 96 0 0 chr6 80199809 80200112 -102215130 + AluSg SINE Alu 1 303 -7 1766 159 0 46 chr6 80200112 80200293 -102214949 + AluJb SINE Alu 151 312 0 2046 128 3 3 chr6 80200316 80200628 -102214614 - AluSx SINE Alu 0 312 1 246 128 0 0 chr6 80201080 80201119 -102214123 + (T)n Simple_repeat Simple_repeat 1 39 0 1974 132 0 40 chr6 80201132 80201458 -102213784 - AluSq SINE Alu 0 313 1 410 249 76 5 chr6 80201718 80201931 -102213311 - L1ME3A LINE L1 -225 5945 5675 839 161 0 0 chr6 80201944 80202081 -102213161 + AluSg/x SINE Alu 166 302 -8 1190 153 132 36 chr6 80202081 80202437 -102212805 + Charlie1 DNA MER1_type 1955 2275 -486 628 166 0 119 chr6 80202437 80202588 -102212654 + FLAM_C SINE Alu 1 133 0 1190 153 132 36 chr6 80202588 80202663 -102212579 + Charlie1 DNA MER1_type 2275 2341 -420 2150 106 20 0 chr6 80202663 80202966 -102212276 - AluSx SINE Alu -3 309 1 1190 153 132 36 chr6 80202966 80202998 -102212244 + Charlie1 DNA MER1_type 2341 2548 -213 862 193 12 12 chr6 80202998 80203164 -102212078 - AluSx SINE Alu -25 287 122 689 171 17 0 chr6 80203713 80203830 -102211412 - AluJo SINE Alu -74 238 120 834 112 0 0 chr6 80203943 80204059 -102211183 - AluSq/x SINE Alu -197 116 1 563 137 23 92 chr6 80204068 80204199 -102211043 + L1MA10 LINE L1 6210 6331 -3 2170 114 0 0 chr6 80204271 80204569 -102210673 + AluSx SINE Alu 1 298 -14 1110 117 12 0 chr6 80204569 80204732 -102210510 + AluSp SINE Alu 134 298 -15 207 0 0 0 chr6 80205792 80205815 -102209427 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1036 157 6 0 chr6 80205898 80206064 -102209178 - Tigger3(Golem) DNA MER2_type -40 2989 2823 228 211 0 58 chr6 80206060 80206112 -102209130 - Tigger3(Golem) DNA MER2_type -2980 49 1 * 578 241 101 6 chr6 80206115 80206273 -102208969 - MIR SINE MIR -18 244 72 2111 116 0 0 chr6 80206399 80206701 -102208541 + AluSx SINE Alu 1 302 -10 891 164 63 74 chr6 80206801 80206924 -102208318 - MER5A DNA MER1_type 0 189 66 1574 144 52 4 chr6 80206924 80207226 -102208016 - AluSx SINE Alu 0 315 1 891 164 63 74 chr6 80207226 80207290 -102207952 - MER5A DNA MER1_type -123 66 3 246 226 19 0 chr6 80207302 80207355 -102207887 + MIR SINE MIR 103 156 -106 1934 141 10 0 chr6 80207473 80207779 -102207463 + AluSx SINE Alu 1 309 -3 2149 104 13 0 chr6 80207779 80208134 -102207108 + AluSq SINE Alu 1 360 0 693 56 0 0 chr6 80208134 80208224 -102207018 + (GGGAA)n Simple_repeat Simple_repeat 5 94 0 1596 112 119 15 chr6 80208465 80208734 -102206508 - AluSg SINE Alu -13 297 1 1402 170 12 17 chr6 80208893 80209134 -102206108 + LTR32 LTR ERVL 232 471 0 365 230 211 20 chr6 80209365 80209569 -102205673 - L3 LINE CR1 -165 1412 1170 211 25 50 50 chr6 80210096 80210136 -102205106 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1516 152 0 4 chr6 80210142 80210379 -102204863 - AluSx SINE Alu -76 236 1 1960 131 17 7 chr6 80210604 80210902 -102204340 + AluSx SINE Alu 5 305 -7 2134 75 3 10 chr6 80210917 80211209 -102204033 - AluSp SINE Alu -23 290 1 2059 136 3 0 chr6 80211323 80211631 -102203611 + AluSx SINE Alu 1 309 -3 31 0 0 0 chr6 80211718 80211749 -102203493 + AT_rich Low_complexity Low_complexity 1 31 0 2361 70 0 0 chr6 80211757 80212057 -102203185 - AluY SINE Alu -11 300 1 1634 160 3 20 chr6 80212082 80212388 -102202854 - AluJo SINE Alu 0 312 12 975 194 164 14 chr6 80212885 80213178 -102202064 + MER2 DNA MER2_type 1 337 -8 326 146 36 0 chr6 80213218 80213273 -102201969 - MER66B LTR ERV1 -139 347 291 2192 95 16 0 chr6 80213733 80214038 -102201204 - AluSg SINE Alu 0 310 1 2032 100 7 0 chr6 80214769 80215068 -102200174 + AluSx SINE Alu 5 305 -7 1529 173 15 52 chr6 80215751 80216075 -102199167 + AluSx SINE Alu 1 312 0 371 254 55 85 chr6 80216345 80216457 -102198785 + L1MC/D LINE L1 5578 5683 -2125 1900 130 10 0 chr6 80216457 80216749 -102198493 + AluSq SINE Alu 5 299 -14 371 254 55 85 chr6 80216749 80216837 -102198405 + L1MC/D LINE L1 5683 5772 -2036 827 191 32 0 chr6 80216994 80217151 -102198091 - AluJo/FRAM SINE Alu -17 295 134 1857 113 51 3 chr6 80217151 80217443 -102197799 - AluSg SINE Alu -4 306 1 803 176 63 59 chr6 80217865 80218087 -102197155 - MIR SINE MIR -32 230 8 300 286 63 8 chr6 80218127 80218253 -102196989 - L2 LINE L2 -78 3235 3103 253 199 58 12 chr6 80218254 80218374 -102196868 + Alu SINE Alu 1 35 -268 858 97 6 102 chr6 80218393 80218569 -102196673 + AluSp/q SINE Alu 155 313 0 32 26 0 0 chr6 80220177 80220216 -102195026 + GC_rich Low_complexity Low_complexity 1 39 0 366 80 0 0 chr6 80220990 80221040 -102194202 + (CA)n Simple_repeat Simple_repeat 1 50 0 612 203 127 28 chr6 80221048 80221260 -102193982 + L1MC4 LINE L1 7172 7404 -638 315 273 18 48 chr6 80221369 80221534 -102193708 + L1MC4 LINE L1 7700 7859 -183 2037 95 9 52 chr6 80221542 80221868 -102193374 - AluSx SINE Alu 0 312 1 1880 123 7 4 chr6 80221888 80222164 -102193078 - AluSg SINE Alu -33 277 1 752 173 89 11 chr6 80222341 80222520 -102192722 + MER33 DNA MER1_type 1 193 -131 1865 157 0 3 chr6 80222566 80222878 -102192364 + AluJb SINE Alu 1 311 -1 670 122 0 98 chr6 80222878 80223001 -102192241 - AluJo/FLAM SINE Alu -200 112 2 464 201 104 0 chr6 80223003 80223137 -102192105 + MER33 DNA MER1_type 177 324 0 297 216 137 0 chr6 80223152 80223254 -102191988 + MER33 DNA MER1_type 248 363 0 1556 96 48 0 chr6 80223334 80223564 -102191678 - AluSp SINE Alu -5 308 68 1550 188 7 0 chr6 80223949 80224278 -102190964 - AluJb SINE Alu 0 331 1 474 280 69 35 chr6 80224529 80224761 -102190481 + L1MC/D LINE L1 5534 5773 -2035 1862 118 3 80 chr6 80224779 80225117 -102190125 + AluSx SINE Alu 1 312 0 814 201 35 29 chr6 80225126 80225300 -102189942 + AluJo SINE Alu 109 283 -29 180 0 0 0 chr6 80225304 80225324 -102189918 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 355 185 143 0 chr6 80225326 80225445 -102189797 + HAL1 LINE L1 2041 2176 -331 329 144 4 4 chr6 80225544 80225607 -102189635 - Alu SINE Alu -254 47 1 2061 124 0 0 chr6 80225633 80225940 -102189302 - AluSg SINE Alu -1 309 3 2261 100 0 0 chr6 80225962 80226271 -102188971 - AluSx SINE Alu -3 309 1 2117 112 0 10 chr6 80226273 80226578 -102188664 - AluSg SINE Alu -8 302 1 965 148 0 0 chr6 80226578 80226747 -102188495 - L1P5 LINE L1 -665 5491 5323 1365 144 9 0 chr6 80226748 80226977 -102188265 - AluSg/x SINE Alu -10 300 70 28 0 0 0 chr6 80227200 80227228 -102188014 + AT_rich Low_complexity Low_complexity 1 28 0 1161 164 0 5 chr6 80227269 80227470 -102187772 - AluJb SINE Alu -25 287 88 242 167 292 0 chr6 80227470 80227518 -102187724 + FLAM SINE Alu 53 114 -19 233 160 0 20 chr6 80227533 80227583 -102187659 + GA-rich Low_complexity Low_complexity 2 50 0 803 182 0 23 chr6 80227622 80227798 -102187444 + FRAM SINE Alu 2 173 -3 506 167 21 10 chr6 80227892 80227988 -102187254 + FLAM_A SINE Alu 16 112 -30 180 111 0 0 chr6 80228051 80228078 -102187164 + (A)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr6 80230727 80230748 -102184494 + (T)n Simple_repeat Simple_repeat 1 21 0 1904 113 32 0 chr6 80230776 80231059 -102184183 - AluSx SINE Alu -20 292 1 1672 106 102 4 chr6 80231563 80231838 -102183404 - AluSg SINE Alu -8 302 1 406 80 0 0 chr6 80232073 80232123 -102183119 - MLT1B LTR MaLR -308 82 33 1777 117 62 0 chr6 80232231 80232504 -102182738 + AluSx SINE Alu 1 290 -22 2101 99 0 3 chr6 80232542 80232858 -102182384 + AluSg SINE Alu 1 315 0 2054 126 3 0 chr6 80232868 80233177 -102182065 + AluSx SINE Alu 1 310 -2 2271 59 10 13 chr6 80233189 80233493 -102181749 + AluY SINE Alu 1 303 -8 663 249 23 23 chr6 80234037 80234214 -102181028 + MER5A DNA MER1_type 10 186 -3 1513 148 6 80 chr6 80236664 80236975 -102178267 - AluJb SINE Alu -23 289 2 1836 132 0 42 chr6 80237191 80237337 -102177905 + AluSx SINE Alu 1 129 -183 2269 99 0 3 chr6 80237337 80237650 -102177592 + AluSp SINE Alu 1 312 -1 1836 132 0 42 chr6 80237650 80237814 -102177428 + AluSx SINE Alu 129 298 -14 818 194 31 19 chr6 80237832 80237992 -102177250 + FRAM SINE Alu 1 162 -14 219 139 0 0 chr6 80238763 80238799 -102176443 + (T)n Simple_repeat Simple_repeat 1 36 0 499 104 0 0 chr6 80239194 80239261 -102175981 - AluJo SINE Alu -1 301 235 860 170 127 6 chr6 80239261 80239426 -102175816 - AluJo SINE Alu -126 186 2 1925 113 7 0 chr6 80239453 80239753 -102175489 - AluSx SINE Alu 0 308 7 39 0 0 0 chr6 80239759 80239798 -102175444 + AT_rich Low_complexity Low_complexity 1 39 0 1644 139 33 0 chr6 80239798 80240071 -102175171 + AluJo SINE Alu 18 299 -13 321 183 61 37 chr6 80240072 80240154 -102175088 - ORSL DNA AcHobo -184 91 8 725 178 31 0 chr6 80240459 80240588 -102174654 - FLAM_C SINE Alu 0 133 1 2096 94 0 3 chr6 80240682 80240997 -102174245 - AluSq SINE Alu 0 314 1 1282 167 25 8 chr6 80241182 80241427 -102173815 + AluJo SINE Alu 11 259 -53 208 96 41 55 chr6 80241440 80241513 -102173729 + (TA)n Simple_repeat Simple_repeat 1 72 0 1335 133 67 48 chr6 80241542 80241662 -102173580 + LTR65 LTR ERV1 2 118 -551 2027 107 31 3 chr6 80241662 80241953 -102173289 - AluSx SINE Alu -13 299 1 1335 133 67 48 chr6 80241953 80242102 -102173140 + LTR65 LTR ERV1 118 276 -393 692 174 107 96 chr6 80242142 80242320 -102172922 + LTR65 LTR ERV1 264 443 -226 1059 100 47 0 chr6 80242333 80242510 -102172732 - AluSq SINE Alu 0 310 127 2154 89 0 0 chr6 80242514 80242815 -102172427 - AluSx SINE Alu 0 301 1 265 337 12 0 chr6 80243057 80243143 -102172099 + MER110-int LTR ERV1 1997 2083 -2564 21 36 0 0 chr6 80243500 80243528 -102171714 + AT_rich Low_complexity Low_complexity 1 28 0 1426 193 0 29 chr6 80243552 80243832 -102171410 - AluJo SINE Alu -32 280 9 1728 168 3 10 chr6 80243956 80244265 -102170977 - AluJb SINE Alu 0 312 6 251 122 204 0 chr6 80244293 80244342 -102170900 - Charlie1 DNA MER1_type 0 2761 2703 311 233 0 0 chr6 80244363 80244423 -102170819 + AluJ/FRAM SINE Alu 233 292 -10 1887 138 0 16 chr6 80244446 80244750 -102170492 + AluSx SINE Alu 1 299 -13 385 190 211 14 chr6 80244750 80244892 -102170350 - Charlie1 DNA MER1_type -50 2711 2542 1924 110 25 0 chr6 80244906 80245187 -102170055 - AluJb SINE Alu -24 288 1 751 227 5 5 chr6 80245958 80246165 -102169077 + AluYa5 SINE Alu 100 306 -5 1634 182 96 50 chr6 80246168 80246389 -102168853 + L1M4 LINE L1 3759 3968 -2178 1966 110 17 3 chr6 80246389 80246679 -102168563 - AluSg SINE Alu -16 294 1 1634 182 96 50 chr6 80246679 80246880 -102168362 + L1M4 LINE L1 3968 4158 -1988 2185 104 3 0 chr6 80246880 80247187 -102168055 - AluSp SINE Alu -5 308 1 1634 182 96 50 chr6 80247187 80247416 -102167826 + L1M4 LINE L1 4158 4540 -1606 417 227 61 87 chr6 80247415 80247477 -102167765 + L1M4 LINE L1 4943 5005 -1141 * 2274 81 0 28 chr6 80247477 80247797 -102167445 + AluSq SINE Alu 1 311 -2 417 227 61 87 chr6 80247797 80247892 -102167350 + L1M4 LINE L1 5005 5095 -1051 216 97 0 0 chr6 80247892 80247923 -102167319 + (TA)n Simple_repeat Simple_repeat 2 32 0 417 227 61 87 chr6 80247923 80247993 -102167249 + L1M4 LINE L1 5095 5165 -981 2088 117 0 16 chr6 80248022 80248338 -102166904 + AluSq SINE Alu 3 313 0 1150 105 0 6 chr6 80248401 80248563 -102166679 - AluSg/x SINE Alu -28 284 124 1707 140 3 29 chr6 80248662 80248970 -102166272 - AluSx SINE Alu -12 300 1 355 235 59 39 chr6 80249439 80249541 -102165701 + MIR SINE MIR 90 193 -69 2035 13 0 4 chr6 80250414 80250650 -102164592 + L1PA4 LINE L1 5919 6153 -2 1243 153 50 8 chr6 80250743 80250985 -102164257 + AluSx SINE Alu 53 304 -8 299 77 0 0 chr6 80251082 80251121 -102164121 - L1MC1 LINE L1 -8 6325 6287 971 184 66 5 chr6 80251126 80251322 -102163920 + MER2 DNA MER2_type 3 210 -135 1816 105 16 79 chr6 80251375 80251690 -102163552 - AluSq SINE Alu -13 300 6 242 154 0 19 chr6 80251697 80251749 -102163493 + A-rich Low_complexity Low_complexity 6 56 0 228 184 0 0 chr6 80252778 80252816 -102162426 - L1MC1 LINE L1 -186 6147 6110 * 372 194 14 0 chr6 80252811 80252883 -102162359 - L1 LINE L1 -2485 3661 3589 * 695 185 39 0 chr6 80252880 80253010 -102162232 + L1 LINE L1 3633 3767 -2379 2052 126 7 7 chr6 80253096 80253397 -102161845 - AluSq SINE Alu -12 301 1 2376 84 0 7 chr6 80253413 80253723 -102161519 - AluSc SINE Alu -1 308 1 805 148 0 15 chr6 80253728 80253863 -102161379 - AluSq/x SINE Alu -179 133 1 1384 156 102 33 chr6 80253909 80254184 -102161058 - AluJb SINE Alu -8 294 1 1243 174 134 0 chr6 80254352 80254627 -102160615 + AluJo SINE Alu 1 312 0 452 212 30 0 chr6 80254708 80254807 -102160435 - U13 snRNA snRNA -2 102 1 744 143 0 24 chr6 80254852 80254978 -102160264 + AluJb SINE Alu 1 123 -189 389 292 107 6 chr6 80254988 80255166 -102160076 - MER112 DNA MER1_type -53 207 12 749 96 22 73 chr6 80255168 80255304 -102159938 + FLAM_C SINE Alu 6 134 -9 2139 80 3 32 chr6 80256116 80256428 -102158814 + AluSx SINE Alu 1 303 -9 1670 123 56 14 chr6 80256747 80257032 -102158210 - AluSg SINE Alu 0 310 14 3398 169 121 15 chr6 80257394 80258219 -102157023 - L1MB1 LINE L1 0 6168 5263 1681 131 27 47 chr6 80258606 80258904 -102156338 - AluSx SINE Alu -20 292 1 2215 95 0 0 chr6 80259049 80259345 -102155897 - AluSx SINE Alu -16 296 1 2014 128 0 3 chr6 80259735 80260040 -102155202 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 80261398 80261422 -102153820 + AT_rich Low_complexity Low_complexity 1 24 0 1508 181 16 29 chr6 80261756 80262071 -102153171 - AluJb SINE Alu -1 311 1 21 0 0 0 chr6 80262190 80262211 -102153031 + AT_rich Low_complexity Low_complexity 1 21 0 2325 74 3 3 chr6 80262314 80262625 -102152617 + AluY SINE Alu 1 311 0 705 201 0 22 chr6 80263232 80263366 -102151876 - FLAM_C SINE Alu -2 131 1 1879 152 3 0 chr6 80263375 80263672 -102151570 - AluSx SINE Alu -14 298 1 2116 103 10 3 chr6 80263974 80264284 -102150958 + AluSx SINE Alu 1 312 0 1319 180 78 65 chr6 80264437 80264601 -102150641 - AluJb SINE Alu -4 298 138 2151 95 0 10 chr6 80264601 80264905 -102150337 - AluSq SINE Alu -12 301 1 1485 133 114 30 chr6 80264907 80265178 -102150064 - AluSq SINE Alu -19 294 1 1319 180 78 65 chr6 80265178 80265304 -102149938 - AluJb SINE Alu -164 138 1 324 182 34 71 chr6 80265706 80265864 -102149378 + MER3 DNA MER1_type 5 205 -4 181 219 137 41 chr6 80266073 80266146 -102149096 + MIR SINE MIR 129 208 -54 2203 85 14 0 chr6 80266811 80267106 -102148136 - AluSp SINE Alu -13 300 2 373 308 25 0 chr6 80267362 80267482 -102147760 + L1MB2 LINE L1 5479 5601 -520 2164 102 0 3 chr6 80267910 80268204 -102147038 - AluSq SINE Alu -20 293 1 2127 102 10 0 chr6 80268938 80269231 -102146011 + AluSq SINE Alu 1 296 -17 2097 114 3 0 chr6 80269336 80269642 -102145600 - AluSq SINE Alu -6 307 1 2057 126 3 0 chr6 80270535 80270836 -102144406 + AluSq SINE Alu 1 302 -11 28 29 0 0 chr6 80270865 80270900 -102144342 + AT_rich Low_complexity Low_complexity 1 35 0 1881 135 17 0 chr6 80270961 80271250 -102143992 - AluSx SINE Alu -18 294 1 1818 151 0 3 chr6 80271377 80271668 -102143574 - AluJb SINE Alu -10 302 13 2247 61 37 0 chr6 80271691 80271986 -102143256 + AluY SINE Alu 1 306 -5 2143 121 0 3 chr6 80272102 80272415 -102142827 - AluSx SINE Alu 0 312 1 2041 123 0 0 chr6 80272483 80272783 -102142459 - AluSq SINE Alu -13 300 1 180 0 0 0 chr6 80273286 80273306 -102141936 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 183 42 0 0 chr6 80273305 80273329 -102141913 + (TG)n Simple_repeat Simple_repeat 2 25 0 613 119 0 0 chr6 80273329 80273413 -102141829 - AluSg/x SINE Alu -34 276 193 580 172 0 16 chr6 80273424 80273552 -102141690 + (TG)n Simple_repeat Simple_repeat 2 127 0 1858 120 11 0 chr6 80273552 80273826 -102141416 - AluSx SINE Alu -34 278 2 453 120 0 13 chr6 80274144 80274219 -102141023 + AluSc SINE Alu 229 302 -7 2136 88 0 3 chr6 80275815 80276126 -102139116 + AluY SINE Alu 1 310 0 1757 164 160 34 chr6 80277190 80277554 -102137688 + L1MB2 LINE L1 5635 6074 -97 1793 136 18 7 chr6 80277554 80277833 -102137409 + AluSx SINE Alu 1 282 -30 1757 164 160 34 chr6 80277833 80277943 -102137299 + L1MB2 LINE L1 6074 6169 -2 310 171 129 0 chr6 80278781 80278851 -102136391 + L1M4 LINE L1 3112 3190 -2956 1199 120 24 0 chr6 80278946 80279113 -102136129 + AluSc SINE Alu 2 172 -137 339 241 63 0 chr6 80279114 80279193 -102136049 + L1MCa LINE L1 1413 1496 -4930 2241 128 0 0 chr6 80279407 80279704 -102135538 + AluSx SINE Alu 1 297 -15 744 163 98 126 chr6 80279759 80279929 -102135313 + MER51D LTR ERV1 449 613 -44 2018 128 14 0 chr6 80279929 80280225 -102135017 + AluSx SINE Alu 1 300 -12 744 163 98 126 chr6 80280225 80280269 -102134973 + MER51D LTR ERV1 613 657 0 1170 115 0 6 chr6 80280370 80280527 -102134715 - AluSq SINE Alu -21 292 137 2210 99 3 0 chr6 80280610 80280903 -102134339 + AluSp SINE Alu 1 294 -19 279 261 0 0 chr6 80280907 80280972 -102134270 - HAL1 LINE L1 0 2507 2443 2306 97 3 3 chr6 80281394 80281693 -102133549 + AluSg SINE Alu 1 299 -11 47 0 0 17 chr6 80281700 80281736 -102133506 + AT_rich Low_complexity Low_complexity 1 37 -20 2142 100 7 3 chr6 80281736 80282026 -102133216 - AluSp SINE Alu -22 291 1 47 0 0 17 chr6 80282026 80282047 -102133195 + AT_rich Low_complexity Low_complexity 37 57 0 406 193 259 12 chr6 80282186 80282352 -102132890 - HAL1 LINE L1 -69 2438 2232 1507 227 109 31 chr6 80282480 80282903 -102132339 + MER77 LTR ERV1 143 598 -7 2078 207 86 40 chr6 80282992 80283495 -102131747 + MLT1E LTR MaLR 53 578 -15 2327 95 3 7 chr6 80283606 80283910 -102131332 - AluSg SINE Alu -5 305 3 470 228 79 66 chr6 80283939 80284076 -102131166 - HAL1 LINE L1 -330 2177 2034 2112 112 14 10 chr6 80284076 80284371 -102130871 + AluSx SINE Alu 1 296 -16 470 228 79 66 chr6 80284371 80284474 -102130768 - HAL1 LINE L1 -473 2034 1934 271 294 67 0 chr6 80284601 80284781 -102130461 + L1M4 LINE L1 5151 5342 -804 2473 77 0 0 chr6 80284949 80285247 -102129995 + AluY SINE Alu 1 298 -13 22 0 0 0 chr6 80285610 80285632 -102129610 + AT_rich Low_complexity Low_complexity 1 22 0 2234 123 3 0 chr6 80285641 80285949 -102129293 - AluSx SINE Alu -3 309 1 2228 109 3 3 chr6 80286488 80286800 -102128442 + AluSq SINE Alu 1 312 -1 * 2297 82 4 0 chr6 80286799 80287171 -102128071 + AluSg SINE Alu 1 373 0 615 121 0 22 chr6 80287319 80287410 -102127832 - AluSg/x SINE Alu -16 296 208 25 31 0 0 chr6 80287475 80287507 -102127735 + AT_rich Low_complexity Low_complexity 1 32 0 2410 97 3 0 chr6 80287637 80287946 -102127296 - AluSx SINE Alu -2 310 1 2102 117 0 3 chr6 80288075 80288401 -102126841 - AluSx SINE Alu 0 325 1 643 174 0 38 chr6 80288491 80288623 -102126619 + AluJ SINE Alu 5 131 -171 1319 166 5 0 chr6 80288623 80288828 -102126414 - AluJb SINE Alu -22 290 85 1166 153 0 0 chr6 80288872 80289035 -102126207 + AluJ SINE Alu 131 293 -19 231 173 39 19 chr6 80289378 80289430 -102125812 + (CAGCC)n Simple_repeat Simple_repeat 4 56 0 2302 101 3 13 chr6 80289705 80290021 -102125221 + AluSp SINE Alu 1 313 0 2418 68 0 10 chr6 80290347 80290641 -102124601 + AluY SINE Alu 3 293 -18 1003 266 82 39 chr6 80290752 80291153 -102124089 + L1MC4a LINE L1 3839 4272 -1874 1650 105 71 115 chr6 80291153 80291476 -102123766 + AluSg SINE Alu 2 310 0 1003 266 82 39 chr6 80291476 80291620 -102123622 + L1MC4a LINE L1 4272 4408 -1738 2115 145 0 0 chr6 80291623 80291934 -102123308 + AluSx SINE Alu 1 311 -1 949 183 22 131 chr6 80291958 80291992 -102123250 + L1MC5 LINE L1 7329 7365 -596 2180 112 3 3 chr6 80291992 80292305 -102122937 + AluSq SINE Alu 1 313 0 949 183 22 131 chr6 80292305 80292637 -102122605 + L1MC5 LINE L1 7365 7655 -306 1445 201 45 3 chr6 80292639 80292927 -102122315 - AluJb SINE Alu -12 300 1 2372 94 3 0 chr6 80292957 80293264 -102121978 - AluSx SINE Alu -4 308 1 1706 181 17 11 chr6 80293272 80293559 -102121683 - AluJb SINE Alu -23 289 1 2253 95 0 0 chr6 80293605 80293909 -102121333 + AluSx SINE Alu 1 304 0 984 246 96 38 chr6 80293914 80294067 -102121175 + L1MC4a LINE L1 4399 4542 -1604 1150 170 39 164 chr6 80294067 80294288 -102120954 - AluJo SINE Alu -8 294 128 2476 80 0 7 chr6 80294288 80294590 -102120652 - AluSc SINE Alu -9 300 1 1150 170 39 164 chr6 80294590 80294704 -102120538 - AluJo SINE Alu -174 128 1 984 246 96 38 chr6 80294704 80294968 -102120274 + L1MC4a LINE L1 4542 4840 -1306 363 229 0 0 chr6 80294971 80295032 -102120210 - MER2 DNA MER2_type 0 345 285 428 230 0 0 chr6 80295056 80295130 -102120112 - MER2 DNA MER2_type -247 98 25 2084 160 62 28 chr6 80295161 80295460 -102119782 + L1MC3 LINE L1 7287 7605 -180 1942 134 14 7 chr6 80295460 80295750 -102119492 - AluSx SINE Alu -19 293 2 2084 160 62 28 chr6 80295750 80295850 -102119392 + L1MC3 LINE L1 7605 7700 -85 566 202 39 0 chr6 80295852 80295956 -102119286 + FLAM_A SINE Alu 8 115 -27 681 81 20 10 chr6 80295980 80296079 -102119163 + L1MC3 LINE L1 7684 7783 -2 587 190 71 118 chr6 80296076 80296287 -102118955 + L1MC4a LINE L1 5420 5620 -2188 * 26 50 0 0 chr6 80296408 80296448 -102118794 + AT_rich Low_complexity Low_complexity 1 40 0 860 140 0 37 chr6 80296462 80296598 -102118644 + FLAM_C SINE Alu 3 133 0 443 128 0 90 chr6 80296835 80296913 -102118329 + FLAM_A SINE Alu 9 79 -63 392 146 12 98 chr6 80296934 80297016 -102118226 - FLAM_A SINE Alu -55 78 4 655 141 47 0 chr6 80297019 80297147 -102118095 - L1MC3 LINE L1 -95 7690 7557 375 167 69 14 chr6 80297152 80297296 -102117946 + (TA)n Simple_repeat Simple_repeat 2 153 0 1941 130 7 3 chr6 80297327 80297611 -102117631 - AluJb SINE Alu -15 297 13 2143 112 0 3 chr6 80297670 80297986 -102117256 + AluSx SINE Alu 1 315 0 316 300 33 17 chr6 80298035 80298155 -102117087 + L1MC4a LINE L1 6057 6178 -1630 945 137 0 77 chr6 80298236 80298404 -102116838 - FRAM SINE Alu -11 155 1 32 53 0 27 chr6 80298547 80298594 -102116648 + AT_rich Low_complexity Low_complexity 1 47 -26 2106 131 23 3 chr6 80298594 80298900 -102116342 + AluSx SINE Alu 1 312 0 32 53 0 27 chr6 80298900 80298927 -102116315 + AT_rich Low_complexity Low_complexity 47 73 0 2303 96 3 3 chr6 80299217 80299518 -102115724 + AluSc SINE Alu 1 301 -8 1858 95 0 4 chr6 80300071 80300314 -102114928 + AluSq SINE Alu 72 313 0 303 268 45 18 chr6 80300642 80300754 -102114488 - MIR SINE MIR -125 137 23 2462 96 0 0 chr6 80301422 80301734 -102113508 + AluSx SINE Alu 1 312 0 1236 119 0 42 chr6 80301843 80302063 -102113179 - AluSq SINE Alu 0 340 129 2121 129 0 14 chr6 80302681 80302975 -102112267 - AluSx SINE Alu -22 290 1 185 309 123 14 chr6 80302976 80303196 -102112046 + L2 LINE L2 1521 1764 -1550 1693 128 0 76 chr6 80303207 80303391 -102111851 - AluJo SINE Alu -16 296 140 2269 120 7 0 chr6 80303391 80303699 -102111543 - AluSg SINE Alu 0 310 1 1693 128 0 76 chr6 80303699 80303804 -102111438 - AluJo SINE Alu -172 140 29 2440 73 0 3 chr6 80304038 80304341 -102110901 - AluSg1 SINE Alu -7 302 1 1072 275 98 55 chr6 80304647 80304801 -102110441 - L2 LINE L2 -377 2937 2791 2377 86 0 0 chr6 80304801 80305091 -102110151 - AluSg SINE Alu -20 290 1 264 30 0 0 chr6 80305095 80305128 -102110114 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 2224 106 0 0 chr6 80305128 80305411 -102109831 - AluSp SINE Alu -29 284 2 1072 275 98 55 chr6 80305411 80305993 -102109249 - L2 LINE L2 -524 2790 2163 25 75 0 0 chr6 80306006 80306059 -102109183 + AT_rich Low_complexity Low_complexity 1 53 0 2386 96 0 3 chr6 80306850 80307151 -102108091 + AluSx SINE Alu 1 300 -12 378 235 18 60 chr6 80307151 80307252 -102107990 - L1 LINE L1 -1164 4982 4887 2257 100 0 3 chr6 80307252 80307542 -102107700 + AluSc SINE Alu 1 289 -20 378 235 18 60 chr6 80307542 80307570 -102107672 - L1 LINE L1 -1259 4887 4859 225 174 116 35 chr6 80307545 80307631 -102107611 - L1 LINE L1 -1492 4654 4562 * 1552 156 94 0 chr6 80307932 80308188 -102107054 + AluSx SINE Alu 24 303 -9 2275 89 33 0 chr6 80308471 80308773 -102106469 - AluSx SINE Alu 0 312 1 2209 109 3 0 chr6 80308780 80309083 -102106159 - AluSg SINE Alu -6 304 1 2256 126 0 0 chr6 80309250 80309560 -102105682 - AluSx SINE Alu 0 312 3 511 305 88 19 chr6 80309571 80309833 -102105409 + Charlie2 DNA MER1_type 76 355 -2427 1980 171 60 8 chr6 80309837 80310217 -102105025 + L1MB3 LINE L1 5746 6145 -38 26 0 0 0 chr6 80310280 80310306 -102104936 + AT_rich Low_complexity Low_complexity 1 26 0 2265 118 11 38 chr6 80310470 80310835 -102104407 + THE1A LTR MaLR 1 355 0 2402 79 0 41 chr6 80310847 80311164 -102104078 - AluSq SINE Alu -8 305 2 276 250 0 0 chr6 80311242 80311294 -102103948 - MER112 DNA MER1_type -2 258 207 912 198 6 0 chr6 80311349 80311511 -102103731 - FRAM SINE Alu -14 162 1 2053 97 10 64 chr6 80311547 80311858 -102103384 - AluSx SINE Alu -16 296 3 506 208 10 10 chr6 80311864 80311965 -102103277 + MER104 DNA Tc2 7 107 -73 302 152 25 114 chr6 80312001 80312043 -102103199 - MER112 DNA MER1_type -181 79 46 937 190 6 6 chr6 80312043 80312206 -102103036 + FRAM SINE Alu 1 163 -3 302 152 25 114 chr6 80312206 80312242 -102103000 - MER112 DNA MER1_type -214 46 8 2605 53 0 0 chr6 80312555 80312857 -102102385 + AluY SINE Alu 1 302 -9 1361 90 0 0 chr6 80313218 80313384 -102101858 - AluSg/x SINE Alu -17 293 128 985 115 0 0 chr6 80313436 80313566 -102101676 - AluSp SINE Alu -181 132 3 271 287 85 11 chr6 80313670 80313764 -102101478 + MIR SINE MIR 51 151 -111 266 196 20 0 chr6 80313810 80313861 -102101381 - Alu SINE Alu -249 52 1 21 0 0 0 chr6 80313867 80313888 -102101354 + AT_rich Low_complexity Low_complexity 1 21 0 664 143 29 9 chr6 80313888 80313993 -102101249 - U6 snRNA snRNA 0 107 1 21 0 0 0 chr6 80313999 80314020 -102101222 + AT_rich Low_complexity Low_complexity 1 21 0 2322 103 3 3 chr6 80314025 80314335 -102100907 + AluSq SINE Alu 1 310 -3 2407 74 0 26 chr6 80314736 80315045 -102100197 + AluY SINE Alu 2 302 -9 751 254 0 0 chr6 80315102 80315267 -102099975 + FAM SINE Alu 1 165 -10 24 0 0 0 chr6 80315305 80315329 -102099913 + AT_rich Low_complexity Low_complexity 1 24 0 2325 74 7 0 chr6 80315334 80315619 -102099623 - AluSq SINE Alu -26 287 1 1995 74 4 0 chr6 80316442 80316728 -102098514 - AluY SINE Alu 0 311 53 2281 94 0 31 chr6 80316950 80317270 -102097972 + AluSg SINE Alu 1 310 0 2074 101 10 24 chr6 80317328 80317626 -102097616 + AluSx SINE Alu 3 296 -16 6933 55 50 0 chr6 80317777 80318631 -102096611 - MER11D LTR ERVK 0 897 1 1991 131 17 10 chr6 80318677 80318975 -102096267 + AluSx SINE Alu 1 300 -12 328 306 41 27 chr6 80319099 80319225 -102096017 - L1ME3A LINE L1 -263 5907 5776 2191 98 0 17 chr6 80319225 80319552 -102095690 + AluSp SINE Alu 1 322 0 328 306 41 27 chr6 80319552 80319571 -102095671 - L1ME3A LINE L1 -394 5776 5759 808 177 116 24 chr6 80319722 80319886 -102095356 - AluJo SINE Alu -133 179 1 2270 122 3 0 chr6 80319923 80320234 -102095008 + AluSx SINE Alu 1 312 0 2293 78 3 0 chr6 80320310 80320592 -102094650 + AluY SINE Alu 1 283 -28 297 0 0 0 chr6 80320592 80320625 -102094617 + (CA)n Simple_repeat Simple_repeat 2 34 0 2155 113 10 3 chr6 80320829 80321140 -102094102 + AluSq SINE Alu 1 313 0 372 156 33 0 chr6 80321155 80321245 -102093997 + GA-rich Low_complexity Low_complexity 2 94 0 2449 80 6 0 chr6 80321250 80321561 -102093681 + AluSp SINE Alu 1 313 0 2565 54 0 6 chr6 80321822 80322135 -102093107 + AluY SINE Alu 1 311 0 2284 67 21 3 chr6 80323928 80324213 -102091029 - AluY SINE Alu -21 290 1 302 152 25 114 chr6 80324525 80324561 -102090681 + MER112 DNA MER1_type 8 35 -225 943 209 0 0 chr6 80324561 80324724 -102090518 - FRAM SINE Alu -3 163 1 302 152 25 114 chr6 80324724 80324766 -102090476 + MER112 DNA MER1_type 35 79 -181 506 208 10 10 chr6 80324802 80324903 -102090339 - MER104 DNA Tc2 -73 107 7 2191 90 3 40 chr6 80324907 80325208 -102090034 + AluSq SINE Alu 1 290 -23 2664 137 10 57 chr6 80325224 80325236 -102090006 - L1MB3 LINE L1 -11 6172 6161 2366 109 5 41 chr6 80325236 80325604 -102089638 - THE1A LTR MaLR 0 355 1 2664 137 10 57 chr6 80325604 80325631 -102089611 - L1MB3 LINE L1 -22 6161 6134 2203 108 3 7 chr6 80325631 80325936 -102089306 + AluSc SINE Alu 1 304 -5 2664 137 10 57 chr6 80325936 80326057 -102089185 - L1MB3 LINE L1 -49 6134 6009 2175 130 10 0 chr6 80326057 80326364 -102088878 + AluSg SINE Alu 1 310 0 2664 137 10 57 chr6 80326364 80326714 -102088528 - L1MB3 LINE L1 -174 6009 5684 1931 137 7 30 chr6 80326714 80327013 -102088229 - AluSx SINE Alu -18 294 3 1877 120 28 7 chr6 80327015 80327298 -102087944 - AluJb SINE Alu -23 289 1 1634 164 17 17 chr6 80327475 80327767 -102087475 + AluJb SINE Alu 1 292 -20 1997 150 0 13 chr6 80328493 80328793 -102086449 + AluJo SINE Alu 1 296 -16 2367 99 0 0 chr6 80328993 80329287 -102085955 - AluSc SINE Alu -13 296 3 2290 106 7 0 chr6 80329442 80329744 -102085498 - AluSx SINE Alu -8 304 1 391 236 9 38 chr6 80331487 80331593 -102083649 - MIR SINE MIR -95 167 65 1187 206 0 9 chr6 80331682 80331900 -102083342 + AluJb SINE Alu 79 294 -18 696 221 104 59 chr6 80331967 80332189 -102083053 - MER46C DNA MER2_type -103 235 4 1172 123 0 92 chr6 80332198 80332362 -102082880 + MER3 DNA MER1_type 1 140 -69 1114 163 0 0 chr6 80332362 80332528 -102082714 - FRAM SINE Alu 0 166 1 1172 123 0 92 chr6 80332528 80332590 -102082652 + MER3 DNA MER1_type 140 206 -3 544 175 25 94 chr6 80332779 80332877 -102082365 - MER104 DNA Tc2 -1749 149 65 2308 92 0 14 chr6 80332877 80333172 -102082070 + AluSc SINE Alu 1 291 -18 544 175 25 94 chr6 80333172 80333233 -102082009 - MER104 DNA Tc2 -1833 65 1 2068 134 7 0 chr6 80333679 80333971 -102081271 - AluSg SINE Alu -16 294 1 2106 39 16 8 chr6 80334006 80334262 -102080980 + L1PA3 LINE L1 5898 6155 0 574 242 119 26 chr6 80334693 80334887 -102080355 + MIR SINE MIR 2 213 -49 2096 117 0 39 chr6 80335658 80335966 -102079276 + AluSx SINE Alu 1 296 -16 2382 93 3 3 chr6 80335966 80336278 -102078964 + AluSx SINE Alu 1 312 0 2193 93 7 7 chr6 80336630 80336930 -102078312 + AluSq SINE Alu 1 300 -13 225 0 0 0 chr6 80336931 80336956 -102078286 + (CA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr6 80336956 80336981 -102078261 + AT_rich Low_complexity Low_complexity 1 25 0 383 209 189 85 chr6 80337009 80337088 -102078154 - MER5A DNA MER1_type -18 171 102 1590 191 16 16 chr6 80337088 80337397 -102077845 - AluJb SINE Alu -3 309 1 383 209 189 85 chr6 80337397 80337470 -102077772 - MER5A DNA MER1_type -87 102 3 2050 101 49 10 chr6 80337802 80338090 -102077152 - AluSg SINE Alu -11 299 1 517 149 234 0 chr6 80338514 80338621 -102076621 - FLAM_C SINE Alu 0 133 2 3196 163 26 74 chr6 80339193 80339401 -102075841 + L1MB2 LINE L1 4615 4831 -1340 7351 46 2 10 chr6 80339401 80340643 -102074599 + L1PA5 LINE L1 4921 6154 0 3196 163 26 74 chr6 80340643 80340983 -102074259 + L1MB2 LINE L1 4831 5186 -985 1710 168 7 31 chr6 80340983 80341298 -102073944 - AluSx SINE Alu 0 308 1 3196 163 26 74 chr6 80341298 80341454 -102073788 + L1MB2 LINE L1 5186 5348 -823 1690 186 10 3 chr6 80341454 80341745 -102073497 + AluJo SINE Alu 1 293 -19 3196 163 26 74 chr6 80341745 80342048 -102073194 + L1MB2 LINE L1 5348 5664 -507 2145 108 38 19 chr6 80342048 80342362 -102072880 + 7SLRNA srpRNA srpRNA 1 320 0 3196 163 26 74 chr6 80342362 80342445 -102072797 + L1MB2 LINE L1 5664 5749 -422 1773 130 60 3 chr6 80342445 80342729 -102072513 + AluSg SINE Alu 1 300 -10 3196 163 26 74 chr6 80342729 80342954 -102072288 + L1MB2 LINE L1 5749 5868 -303 727 234 0 0 chr6 80342970 80343115 -102072127 - AluJb SINE Alu -30 282 138 1522 110 62 15 chr6 80343118 80343175 -102072067 + L1MB2 LINE L1 5859 5912 -259 2104 111 7 7 chr6 80343175 80343472 -102071770 - AluSq SINE Alu -16 297 1 1522 110 62 15 chr6 80343472 80343687 -102071555 + L1MB2 LINE L1 5912 6144 -27 427 189 0 0 chr6 80343695 80343769 -102071473 + AluJ/FLAM SINE Alu 11 84 -228 204 40 0 0 chr6 80343968 80343993 -102071249 + (TG)n Simple_repeat Simple_repeat 2 26 0 2285 113 0 10 chr6 80344187 80344498 -102070744 + AluY SINE Alu 1 308 -3 1904 152 31 0 chr6 80344864 80345154 -102070088 - AluSx SINE Alu -13 299 1 1519 77 14 5 chr6 80345321 80345529 -102069713 + AluY SINE Alu 102 311 0 823 168 0 0 chr6 80345913 80346038 -102069204 - FLAM_C SINE Alu -18 125 1 1667 196 3 7 chr6 80346529 80346825 -102068417 - AluJo SINE Alu -17 295 1 28 61 0 0 chr6 80346915 80346964 -102068278 + AT_rich Low_complexity Low_complexity 1 49 0 1851 130 81 3 chr6 80347056 80347340 -102067902 + AluSx SINE Alu 1 306 -6 2137 106 6 56 chr6 80348114 80348435 -102066807 - AluSx SINE Alu -7 305 1 604 107 36 0 chr6 80348622 80348706 -102066536 + AluSq SINE Alu 2 88 -225 2186 115 10 0 chr6 80348708 80349003 -102066239 + AluSp SINE Alu 5 302 -11 1532 120 0 18 chr6 80349003 80349242 -102066000 + AluSq SINE Alu 73 309 0 902 134 0 0 chr6 80349253 80349380 -102065862 + FLAM_C SINE Alu 1 127 -16 24 32 0 0 chr6 80349380 80349411 -102065831 + AT_rich Low_complexity Low_complexity 1 31 0 2305 103 3 0 chr6 80349462 80349763 -102065479 + AluSq SINE Alu 2 303 -10 1979 128 13 20 chr6 80349763 80350066 -102065176 + AluSx SINE Alu 1 302 -10 2035 127 28 0 chr6 80350133 80350417 -102064825 + AluSg SINE Alu 1 292 -18 1868 174 7 3 chr6 80350430 80350729 -102064513 + AluJb SINE Alu 1 300 -12 360 88 0 0 chr6 80351182 80351239 -102064003 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2112 92 7 14 chr6 80351239 80351523 -102063719 - AluSx SINE Alu -30 282 1 1585 176 22 9 chr6 80351640 80351959 -102063283 - L1MA9 LINE L1 0 6312 5990 28 0 0 0 chr6 80352095 80352123 -102063119 + AT_rich Low_complexity Low_complexity 1 28 0 388 257 90 90 chr6 80352123 80352411 -102062831 + HAL1 LINE L1 1 288 -2219 1122 121 11 0 chr6 80352548 80352730 -102062512 + L1MB3 LINE L1 5998 6181 -2 1607 195 0 10 chr6 80352799 80353101 -102062141 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr6 80353237 80353258 -102061984 + AT_rich Low_complexity Low_complexity 1 21 0 2144 116 3 0 chr6 80353550 80353834 -102061408 - AluSx SINE Alu -15 297 13 1700 91 0 5 chr6 80354012 80354231 -102061011 + AluSc SINE Alu 1 218 -91 2172 122 3 3 chr6 80354422 80354725 -102060517 + AluSx SINE Alu 1 303 -9 669 237 134 27 chr6 80354726 80354913 -102060329 + HAL1 LINE L1 2039 2205 -302 2096 118 3 3 chr6 80354913 80355201 -102060041 + AluSx SINE Alu 1 288 -24 669 237 134 27 chr6 80355201 80355212 -102060030 + HAL1 LINE L1 2205 2213 -294 2291 104 3 0 chr6 80355212 80355520 -102059722 + AluSc SINE Alu 1 309 0 669 237 134 27 chr6 80355520 80355649 -102059593 + HAL1 LINE L1 2213 2402 -105 2139 104 7 7 chr6 80355678 80355994 -102059248 - AluSp SINE Alu 0 313 5 1919 162 3 3 chr6 80356001 80356297 -102058945 - AluJb SINE Alu -14 298 3 22 35 0 0 chr6 80356389 80356418 -102058824 + AT_rich Low_complexity Low_complexity 1 29 0 2261 86 14 3 chr6 80357334 80357626 -102057616 - AluSx SINE Alu -17 295 1 208 139 0 0 chr6 80357828 80357864 -102057378 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1967 145 10 6 chr6 80357867 80358178 -102057064 + AluSx SINE Alu 1 312 0 216 0 0 0 chr6 80358469 80358493 -102056749 + (T)n Simple_repeat Simple_repeat 1 24 0 1664 172 28 14 chr6 80358594 80358879 -102056363 + AluJo SINE Alu 11 299 -13 2920 6 0 0 chr6 80358900 80359211 -102056031 - AluYa5 SINE Alu 0 311 1 776 178 0 0 chr6 80359287 80359405 -102055837 - FLAM_C SINE Alu -15 118 1 1917 141 3 0 chr6 80359479 80359762 -102055480 - AluJb SINE Alu -18 294 11 2267 105 3 3 chr6 80359940 80360236 -102055006 + AluSp SINE Alu 1 296 -17 529 125 100 0 chr6 80360268 80360427 -102054815 - AluSg/x SINE Alu 0 364 198 2116 109 3 7 chr6 80360457 80360751 -102054491 + AluSg SINE Alu 1 293 -17 353 255 0 39 chr6 80360955 80361057 -102054185 + L1ME4a LINE L1 5967 6064 -57 180 97 0 0 chr6 80361090 80361121 -102054121 + (A)n Simple_repeat Simple_repeat 1 31 0 2301 106 0 0 chr6 80361126 80361427 -102053815 + AluSx SINE Alu 1 301 -11 1328 140 9 128 chr6 80362556 80362884 -102052358 - AluJb SINE Alu -12 290 2 1573 179 33 26 chr6 80364060 80364362 -102050880 - AluJo SINE Alu -8 304 1 228 67 0 0 chr6 80364387 80364417 -102050825 + (TG)n Simple_repeat Simple_repeat 2 31 0 1329 91 0 0 chr6 80364418 80364594 -102050648 - AluSg/x SINE Alu -3 307 132 2446 79 7 0 chr6 80364700 80365004 -102050238 + AluSx SINE Alu 1 306 -6 222 264 132 25 chr6 80365152 80365273 -102049969 - MIR SINE MIR -97 165 32 2051 118 10 3 chr6 80365980 80366277 -102048965 + AluSx SINE Alu 1 299 -13 2644 49 0 0 chr6 80366344 80366650 -102048592 - AluY SINE Alu -5 306 1 2366 112 0 0 chr6 80366732 80367036 -102048206 - AluSg SINE Alu -6 304 1 2249 110 3 0 chr6 80367655 80367956 -102047286 - AluSx SINE Alu -10 302 1 2456 62 3 3 chr6 80368013 80368305 -102046937 - AluSc SINE Alu -17 292 1 970 104 0 130 chr6 80368444 80368636 -102046606 + AluSg/x SINE Alu 137 303 -9 669 169 22 44 chr6 80368647 80368783 -102046459 + FLAM_C SINE Alu 1 133 0 3610 100 115 22 chr6 80369400 80369802 -102045440 + MER41B LTR ERV1 1 475 -160 2064 148 7 0 chr6 80369802 80370107 -102045135 + AluSq SINE Alu 1 307 -6 3610 100 115 22 chr6 80370107 80370285 -102044957 + MER41B LTR ERV1 475 635 0 683 178 39 0 chr6 80370291 80370420 -102044822 + MER58B DNA MER1_type 208 341 0 365 257 171 13 chr6 80370436 80370588 -102044654 + MER5A DNA MER1_type 14 189 0 1949 129 63 0 chr6 80370590 80370876 -102044366 + AluSx SINE Alu 1 304 -8 1741 151 58 0 chr6 80371357 80371635 -102043607 - AluJb SINE Alu -18 294 1 452 191 54 113 chr6 80372344 80372428 -102042814 - MER5A DNA MER1_type -31 158 87 2173 88 53 0 chr6 80372428 80372713 -102042529 - AluSq SINE Alu -12 301 2 452 191 54 113 chr6 80372713 80372796 -102042446 - MER5A DNA MER1_type -102 87 1 2359 73 0 26 chr6 80372833 80373135 -102042107 + AluY SINE Alu 1 294 -17 2352 88 3 13 chr6 80373378 80373684 -102041558 - AluSx SINE Alu -9 303 1 23 0 0 0 chr6 80374278 80374301 -102040941 + AT_rich Low_complexity Low_complexity 1 23 0 2240 100 3 13 chr6 80374301 80374600 -102040642 - AluSq SINE Alu -13 300 5 704 134 0 39 chr6 80375362 80375489 -102039753 + FLAM_C SINE Alu 17 138 -5 268 331 22 15 chr6 80375548 80375684 -102039558 - MIR3 SINE MIR -64 144 8 5378 104 138 130 chr6 80376289 80377843 -102037399 - pTR5 LTR ERV1 0 2438 742 2236 123 0 3 chr6 80377996 80378298 -102036944 + AluSx SINE Alu 1 301 -11 512 265 85 66 chr6 80378386 80378801 -102036441 - MLT1L LTR MaLR -7 608 163 538 182 84 52 chr6 80378801 80378901 -102036341 + MER33 DNA MER1_type 1 109 -2476 1849 97 22 93 chr6 80378901 80379222 -102036020 + AluSx SINE Alu 1 298 -14 538 182 84 52 chr6 80379222 80379275 -102035967 + MER33 DNA MER1_type 109 159 -165 765 180 8 0 chr6 80379296 80379424 -102035818 - FLAM_C SINE Alu 0 133 5 21 0 0 0 chr6 80379427 80379448 -102035794 + AT_rich Low_complexity Low_complexity 1 21 0 1956 144 22 0 chr6 80379462 80379740 -102035502 + AluSx SINE Alu 1 284 -28 2561 77 0 0 chr6 80379740 80380050 -102035192 + AluY SINE Alu 1 310 -1 376 62 62 0 chr6 80380067 80380148 -102035094 + MER33 DNA MER1_type 170 255 -69 687 218 0 8 chr6 80380152 80380285 -102034957 - FLAM_C SINE Alu 0 133 2 25 0 0 0 chr6 80380285 80380310 -102034932 + AT_rich Low_complexity Low_complexity 1 25 0 8161 78 5 15 chr6 80380312 80381394 -102033848 + MER11C LTR ERVK 1 1071 0 2199 114 0 0 chr6 80381400 80381699 -102033543 - AluSx SINE Alu -13 299 1 1094 103 0 40 chr6 80381701 80381876 -102033366 - AluSg/x SINE Alu -16 294 127 232 32 0 0 chr6 80381876 80381907 -102033335 + MER33 DNA MER1_type 296 326 -37 1301 75 0 0 chr6 80382011 80382171 -102033071 - AluSp SINE Alu -24 289 130 929 115 0 0 chr6 80382223 80382353 -102032889 - AluSp SINE Alu -181 132 3 308 287 85 11 chr6 80382457 80382551 -102032691 + MIR SINE MIR 51 151 -111 271 196 20 0 chr6 80382597 80382648 -102032594 - Alu SINE Alu -250 52 1 21 0 0 0 chr6 80382654 80382675 -102032567 + AT_rich Low_complexity Low_complexity 1 21 0 661 143 29 9 chr6 80382675 80382780 -102032462 - U6 snRNA snRNA 0 107 1 21 0 0 0 chr6 80382786 80382807 -102032435 + AT_rich Low_complexity Low_complexity 1 21 0 2196 103 3 3 chr6 80382812 80383122 -102032120 + AluSq SINE Alu 1 310 -3 2288 71 0 26 chr6 80383523 80383832 -102031410 + AluY SINE Alu 2 302 -9 761 254 0 0 chr6 80383889 80384054 -102031188 + FAM SINE Alu 1 165 -10 24 0 0 0 chr6 80384092 80384116 -102031126 + AT_rich Low_complexity Low_complexity 1 24 0 2193 74 7 0 chr6 80384121 80384406 -102030836 - AluSq SINE Alu -26 287 1 1888 74 4 0 chr6 80385228 80385546 -102029696 - AluY SINE Alu 0 311 53 2100 91 0 58 chr6 80385768 80386097 -102029145 + AluSg SINE Alu 1 310 0 1946 106 10 23 chr6 80386154 80386457 -102028785 + AluSx SINE Alu 3 301 -11 623 178 30 44 chr6 80386467 80386602 -102028640 + FLAM_C SINE Alu 1 133 0 183 398 61 0 chr6 80387119 80387217 -102028025 - MIR SINE MIR -61 147 44 3563 103 115 22 chr6 80387219 80387621 -102027621 + MER41B LTR ERV1 1 475 -160 1943 148 7 0 chr6 80387621 80387926 -102027316 + AluSq SINE Alu 1 307 -6 3563 103 115 22 chr6 80387926 80388104 -102027138 + MER41B LTR ERV1 475 635 0 681 178 39 0 chr6 80388110 80388239 -102027003 + MER58B DNA MER1_type 208 341 0 427 257 171 13 chr6 80388255 80388407 -102026835 + MER5A DNA MER1_type 14 189 0 1838 129 63 0 chr6 80388409 80388696 -102026546 + AluSx SINE Alu 1 305 -7 1630 151 58 0 chr6 80389177 80389455 -102025787 - AluJb SINE Alu -18 294 1 512 191 54 113 chr6 80390164 80390248 -102024994 - MER5A DNA MER1_type -31 158 87 2053 88 53 0 chr6 80390248 80390533 -102024709 - AluSq SINE Alu -12 301 2 512 191 54 113 chr6 80390533 80390616 -102024626 - MER5A DNA MER1_type -102 87 1 2251 82 0 25 chr6 80390653 80390968 -102024274 + AluY SINE Alu 1 307 -4 2220 88 3 13 chr6 80391211 80391517 -102023725 - AluSx SINE Alu -9 303 1 2119 107 3 13 chr6 80392124 80392433 -102022809 - AluSq SINE Alu -3 310 5 706 134 0 39 chr6 80393195 80393322 -102021920 + FLAM_C SINE Alu 17 138 -5 319 318 178 22 chr6 80393324 80393517 -102021725 - MIR3 SINE MIR -54 208 2 6061 112 208 118 chr6 80394122 80395678 -102019564 - pTR5 LTR ERV1 0 2438 742 2125 122 0 3 chr6 80395831 80396135 -102019107 + AluSx SINE Alu 1 303 -9 518 265 85 66 chr6 80396223 80396638 -102018604 - MLT1L LTR MaLR -7 608 163 527 182 84 52 chr6 80396638 80396738 -102018504 + MER33 DNA MER1_type 1 109 -2476 1765 100 22 87 chr6 80396738 80397059 -102018183 + AluSx SINE Alu 1 300 -12 527 182 84 52 chr6 80397059 80397112 -102018130 + MER33 DNA MER1_type 109 159 -165 767 180 8 0 chr6 80397133 80397261 -102017981 - FLAM_C SINE Alu 0 133 5 21 0 0 0 chr6 80397264 80397285 -102017957 + AT_rich Low_complexity Low_complexity 1 21 0 1834 144 22 0 chr6 80397299 80397577 -102017665 + AluSx SINE Alu 1 284 -28 2321 78 10 3 chr6 80397577 80397885 -102017357 + AluY SINE Alu 1 310 -1 319 74 32 74 chr6 80397902 80397986 -102017256 + MER33 DNA MER1_type 209 290 -2334 687 218 0 8 chr6 80397986 80398119 -102017123 - FLAM_C SINE Alu 0 133 2 8159 78 5 15 chr6 80398146 80399228 -102016014 + MER11C LTR ERVK 1 1071 0 2199 114 0 0 chr6 80399234 80399533 -102015709 - AluSx SINE Alu -13 299 1 1030 133 17 0 chr6 80399535 80399708 -102015534 - AluSg/x SINE Alu -16 296 121 251 176 0 81 chr6 80399708 80399739 -102015503 + MER33 DNA MER1_type 296 328 -2296 2127 112 0 10 chr6 80399739 80400051 -102015191 + AluSx SINE Alu 1 309 -3 251 176 0 81 chr6 80400051 80400093 -102015149 + MER33 DNA MER1_type 328 363 0 768 183 36 96 chr6 80400837 80400939 -102014303 + MIR SINE MIR 51 135 -127 2033 108 45 0 chr6 80400939 80401226 -102014016 + AluSx SINE Alu 1 300 -12 768 183 36 96 chr6 80401226 80401342 -102013900 + MIR SINE MIR 135 256 -6 1977 125 7 3 chr6 80401701 80402004 -102013238 - AluSc SINE Alu -4 305 2 180 77 0 0 chr6 80402725 80402751 -102012491 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 300 53 0 0 chr6 80403428 80403466 -102011776 + (TG)n Simple_repeat Simple_repeat 2 39 0 2319 132 23 2 chr6 80403901 80404294 -102010948 + L1MB7 LINE L1 4563 4963 -1183 240 217 0 0 chr6 80404300 80404346 -102010896 + MER66B LTR ERV1 299 344 -142 2119 139 0 0 chr6 80404407 80404716 -102010526 + AluSx SINE Alu 3 311 -1 1870 177 85 7 chr6 80404717 80405129 -102010113 + L1MB7 LINE L1 5683 6126 -58 447 194 194 10 chr6 80405137 80405235 -102010007 - FLAM_A SINE Alu -17 116 1 2116 109 3 0 chr6 80405247 80405551 -102009691 - AluSx SINE Alu -7 305 1 398 314 61 56 chr6 80405588 80405908 -102009334 - L1ME LINE L1 -356 5806 5482 1784 101 20 37 chr6 80405908 80406206 -102009036 - AluSq SINE Alu -20 293 1 398 314 61 56 chr6 80406206 80406277 -102008965 - L1ME LINE L1 -680 5482 5413 2311 90 0 0 chr6 80406282 80406593 -102008649 - AluSq SINE Alu -2 311 1 182 156 22 0 chr6 80406593 80406638 -102008604 + T-rich Low_complexity Low_complexity 3 48 0 584 161 85 77 chr6 80406644 80406774 -102008468 - FLAM_C SINE Alu -2 131 1 1995 112 0 30 chr6 80406840 80406967 -102008275 + AluSg1 SINE Alu 1 130 -179 2480 58 0 3 chr6 80406967 80407279 -102007963 + AluY SINE Alu 1 311 0 1995 112 0 30 chr6 80407279 80407454 -102007788 + AluSg1 SINE Alu 130 294 -15 2052 140 3 0 chr6 80407533 80407841 -102007401 - AluSx SINE Alu -3 309 1 935 191 16 0 chr6 80408725 80408914 -102006328 - AluJb SINE Alu -3 309 118 429 246 8 71 chr6 80409253 80409379 -102005863 + L2 LINE L2 3193 3310 -3 2157 92 3 0 chr6 80409626 80409918 -102005324 + AluSq SINE Alu 1 293 -20 1560 178 0 16 chr6 80409925 80410229 -102005013 - AluJo SINE Alu -13 299 1 1447 147 68 51 chr6 80410423 80410715 -102004527 + AluSx SINE Alu 1 297 -15 267 223 213 11 chr6 80410750 80410844 -102004398 + L2 LINE L2 3159 3271 -1 1794 164 10 3 chr6 80411403 80411708 -102003534 - AluJb SINE Alu -5 307 1 1671 160 31 0 chr6 80411739 80412027 -102003215 + AluJb SINE Alu 1 297 -15 880 186 0 6 chr6 80412070 80412237 -102003005 - FRAM SINE Alu 0 166 1 1140 118 0 12 chr6 80412254 80412424 -102002818 - AluSx SINE Alu -144 168 1 2528 40 3 0 chr6 80412670 80412971 -102002271 + AluY SINE Alu 2 303 -8 1922 93 4 4 chr6 80413045 80413315 -102001927 + AluSg SINE Alu 27 296 -14 2175 78 7 7 chr6 80413459 80413765 -102001477 - AluSp SINE Alu 0 313 8 2247 68 10 10 chr6 80413776 80414085 -102001157 - AluY SINE Alu -2 309 1 4041 144 58 121 chr6 80414085 80414837 -102000405 - MER21A LTR ERV1 -19 912 231 2268 78 3 0 chr6 80414837 80415133 -102000109 - AluSg SINE Alu -13 297 1 4041 144 58 121 chr6 80415133 80415341 -101999901 - MER21A LTR ERV1 -700 231 12 577 143 118 67 chr6 80415541 80415660 -101999582 + FLAM_A SINE Alu 2 126 -7 828 139 16 0 chr6 80416342 80416471 -101998771 + FLAM_C SINE Alu 1 131 -12 2238 103 0 3 chr6 80416567 80416877 -101998365 - AluSg SINE Alu -1 309 1 1741 194 68 38 chr6 80417834 80418264 -101996978 + L1ME3A LINE L1 5678 6125 -45 1779 153 0 22 chr6 80418264 80418453 -101996789 - AluJb SINE Alu -5 307 126 372 94 0 0 chr6 80418453 80418506 -101996736 + (TA)n Simple_repeat Simple_repeat 2 54 0 1779 153 0 22 chr6 80418506 80418630 -101996612 - AluJb SINE Alu -186 126 1 1741 194 68 38 chr6 80418630 80418673 -101996569 + L1ME3A LINE L1 6125 6165 -5 2249 60 0 3 chr6 80419099 80419412 -101995830 + AluY SINE Alu 1 312 0 2216 99 3 0 chr6 80419413 80419716 -101995526 + AluSq SINE Alu 1 304 -9 1935 96 14 7 chr6 80419719 80420031 -101995211 + AluY SINE Alu 1 314 0 1619 157 21 7 chr6 80420034 80420361 -101994881 + AluJb SINE Alu 1 331 0 2133 108 3 0 chr6 80420879 80421176 -101994066 + AluSx SINE Alu 1 298 -14 2123 84 32 0 chr6 80421241 80421525 -101993717 + AluSp SINE Alu 1 293 -20 846 139 7 14 chr6 80421562 80421706 -101993536 + AluSq SINE Alu 134 276 -37 934 154 24 0 chr6 80421737 80421906 -101993336 - FRAM SINE Alu -6 170 1 2058 100 14 0 chr6 80422333 80422624 -101992618 - AluSg SINE Alu -15 295 1 422 129 0 0 chr6 80423028 80423098 -101992144 - Alu SINE Alu -2 310 241 2410 150 43 127 chr6 80423102 80423935 -101991307 + SVA Other Other 104 866 -520 6317 58 14 50 chr6 80423957 80425407 -101989835 + SVA Other Other 436 1405 0 2161 48 0 4 chr6 80425428 80425700 -101989542 + AluY SINE Alu 1 271 -40 546 250 150 14 chr6 80425930 80426150 -101989092 - L1ME4a LINE L1 0 6121 5872 1450 92 209 32 chr6 80426155 80426404 -101988838 - AluSx SINE Alu -9 293 1 2068 127 3 0 chr6 80426433 80426732 -101988510 - AluSq SINE Alu -13 300 1 454 232 12 67 chr6 80426756 80426920 -101988322 - L1MC5 LINE L1 -515 7446 7292 217 0 29 29 chr6 80426920 80426954 -101988288 + (CAAAAA)n Simple_repeat Simple_repeat 5 38 0 1395 152 33 56 chr6 80427474 80427776 -101987466 + AluJb SINE Alu 1 295 -17 209 211 89 56 chr6 80427917 80428007 -101987235 - MIR SINE MIR -34 228 136 21 0 0 0 chr6 80428007 80428028 -101987214 + AT_rich Low_complexity Low_complexity 1 21 0 774 172 0 0 chr6 80428034 80428156 -101987086 - FLAM_C SINE Alu -10 123 2 342 0 0 0 chr6 80428643 80428681 -101986561 + (CA)n Simple_repeat Simple_repeat 2 39 0 2286 94 3 0 chr6 80428708 80429016 -101986226 + AluSp SINE Alu 1 309 -4 1935 132 0 0 chr6 80429041 80429355 -101985887 - AluSx SINE Alu 0 314 1 223 320 113 27 chr6 80429541 80429691 -101985551 - L3 LINE CR1 -3 1574 1412 232 237 102 34 chr6 80429708 80429767 -101985475 + L2 LINE L2 3172 3234 -38 438 336 101 27 chr6 80429779 80430077 -101985165 - L3 LINE CR1 -996 581 262 268 241 52 0 chr6 80430180 80430238 -101985004 - MIR SINE MIR -50 212 152 1869 120 50 0 chr6 80430295 80430578 -101984664 - AluSq SINE Alu -16 297 1 2298 96 0 0 chr6 80430788 80431089 -101984153 - AluSx SINE Alu -11 301 1 589 318 93 47 chr6 80431198 80431648 -101983594 + MLT1K LTR MaLR 110 580 -8 1564 175 4 18 chr6 80431746 80432020 -101983222 + AluJo SINE Alu 1 270 -42 21 57 0 0 chr6 80432153 80432188 -101983054 + AT_rich Low_complexity Low_complexity 1 35 0 336 320 62 38 chr6 80432297 80432475 -101982767 + MIR SINE MIR 9 190 -62 266 321 223 0 chr6 80432577 80432689 -101982553 - L2 LINE L2 0 3272 3136 1137 166 72 0 chr6 80432826 80433049 -101982193 + L1MB3 LINE L1 5933 6171 -12 2323 105 0 0 chr6 80433051 80433346 -101981896 - AluSq SINE Alu -18 295 1 22 0 0 0 chr6 80433356 80433378 -101981864 + AT_rich Low_complexity Low_complexity 1 22 0 1811 147 3 27 chr6 80433975 80434267 -101980975 + AluJo SINE Alu 3 287 -25 2185 111 3 0 chr6 80434302 80434591 -101980651 - AluSx SINE Alu -22 290 1 282 116 47 0 chr6 80434743 80434786 -101980456 + MER3 DNA MER1_type 1 45 -164 1143 149 18 143 chr6 80434830 80435189 -101980053 - AluJo SINE Alu 0 318 2 1741 115 68 21 chr6 80435192 80435471 -101979771 - AluSq SINE Alu -21 292 1 854 216 0 29 chr6 80435585 80435756 -101979486 - FRAM SINE Alu -15 161 1 1755 157 45 11 chr6 80435782 80436068 -101979174 + AluJb SINE Alu 1 296 -16 2268 108 7 0 chr6 80436384 80436672 -101978570 - AluSg SINE Alu -18 292 3 994 191 8 72 chr6 80436849 80436996 -101978246 + AluJo SINE Alu 1 129 -183 1864 167 3 3 chr6 80436996 80437301 -101977941 + AluJb SINE Alu 1 305 -7 994 191 8 72 chr6 80437301 80437388 -101977854 + AluJo SINE Alu 129 220 -92 236 143 0 24 chr6 80437388 80437430 -101977812 + Alu SINE Alu 86 126 -176 4169 191 58 26 chr6 80437442 80438257 -101976985 + MER21B LTR ERV1 12 852 -11 32 26 0 0 chr6 80438811 80438850 -101976392 + AT_rich Low_complexity Low_complexity 1 39 0 2358 111 0 0 chr6 80438890 80439196 -101976046 - AluSg SINE Alu -4 306 1 226 271 0 17 chr6 80439209 80439268 -101975974 - L1ME3A LINE L1 -97 6073 6016 306 0 0 0 chr6 80439559 80439593 -101975649 + (CA)n Simple_repeat Simple_repeat 2 35 0 2295 107 7 0 chr6 80439620 80439919 -101975323 - AluSx SINE Alu -11 301 1 2327 120 0 0 chr6 80440324 80440632 -101974610 - AluSg SINE Alu -2 308 1 268 404 49 4 chr6 80440748 80440973 -101974269 + L2 LINE L2 2599 2833 -481 402 158 185 89 chr6 80441084 80441106 -101974136 + MER90 LTR ERV1 1 19 -556 2281 116 3 0 chr6 80441106 80441416 -101973826 + AluSp SINE Alu 1 311 -2 402 158 185 89 chr6 80441416 80441539 -101973703 + MER90 LTR ERV1 19 160 -415 473 189 0 0 chr6 80441539 80441629 -101973613 + AluSg/x SINE Alu 217 306 -3 1401 200 175 11 chr6 80441629 80441989 -101973253 + MER90 LTR ERV1 196 614 0 253 302 11 124 chr6 80441991 80442256 -101972986 + L2 LINE L2 3038 3272 0 1724 141 50 7 chr6 80442373 80442656 -101972586 + AluJo SINE Alu 11 305 -7 1855 186 3 0 chr6 80442776 80443083 -101972159 - AluJb SINE Alu -4 308 1 907 194 7 0 chr6 80443339 80443494 -101971748 - AluJo SINE Alu -23 289 134 180 0 0 0 chr6 80443518 80443538 -101971704 + (T)n Simple_repeat Simple_repeat 1 20 0 880 159 0 0 chr6 80443741 80443873 -101971369 - AluJo SINE Alu -170 132 1 21 36 0 0 chr6 80443902 80443930 -101971312 + AT_rich Low_complexity Low_complexity 1 28 0 593 156 0 0 chr6 80443939 80444029 -101971213 + AluJ/FLAM SINE Alu 2 91 -221 1759 118 4 25 chr6 80444191 80444470 -101970772 + AluSx SINE Alu 34 306 -6 2105 104 7 4 chr6 80444479 80444795 -101970447 + AluSg1 SINE Alu 1 317 0 878 110 0 0 chr6 80444806 80444924 -101970318 + FLAM_C SINE Alu 1 118 -25 25 49 0 33 chr6 80445008 80445039 -101970203 + AT_rich Low_complexity Low_complexity 1 31 -28 2434 67 0 7 chr6 80445039 80445337 -101969905 - AluY SINE Alu -15 296 1 25 49 0 33 chr6 80445337 80445366 -101969876 + AT_rich Low_complexity Low_complexity 31 59 0 2235 90 0 10 chr6 80445366 80445656 -101969586 - AluSg SINE Alu -23 287 1 2243 120 0 0 chr6 80445786 80446086 -101969156 - AluSx SINE Alu -12 300 1 1816 148 31 7 chr6 80446107 80446398 -101968844 + AluJo SINE Alu 1 298 -14 1741 161 11 4 chr6 80446501 80446808 -101968434 + AluJb SINE Alu 1 309 0 858 117 0 36 chr6 80447128 80447265 -101967977 + FLAM_C SINE Alu 1 132 -1 2171 131 0 19 chr6 80447512 80447826 -101967416 + AluSg SINE Alu 1 308 -2 808 163 16 0 chr6 80448108 80448237 -101967005 - FLAM_A SINE Alu -2 131 1 229 246 33 0 chr6 80448238 80448299 -101966943 + CT-rich Low_complexity Low_complexity 3 65 0 1039 172 0 0 chr6 80448302 80448491 -101966751 - AluJb SINE Alu 0 317 129 271 145 0 32 chr6 80448491 80448553 -101966689 + (TCC)n Simple_repeat Simple_repeat 2 61 0 1461 161 0 73 chr6 80448556 80448842 -101966400 - AluJo SINE Alu -6 306 42 2275 121 0 0 chr6 80448976 80449282 -101965960 - AluSq SINE Alu -7 306 1 1584 193 10 10 chr6 80449319 80449614 -101965628 + AluJb SINE Alu 1 295 -17 2076 132 0 0 chr6 80449748 80450048 -101965194 + AluSg SINE Alu 1 300 0 1932 154 0 20 chr6 80450195 80450500 -101964742 + AluSx SINE Alu 1 299 -13 208 182 13 52 chr6 80450666 80450743 -101964499 + (TTGTG)n Simple_repeat Simple_repeat 1 74 0 1533 127 138 11 chr6 80450928 80451188 -101964054 - AluSg1 SINE Alu -16 293 1 689 222 42 0 chr6 80451222 80451389 -101963853 - L1MB4 LINE L1 -3 6177 6004 207 0 0 0 chr6 80451410 80451433 -101963809 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2139 132 0 0 chr6 80451501 80451797 -101963445 - AluSx SINE Alu -16 296 1 26 0 0 0 chr6 80452217 80452243 -101962999 + AT_rich Low_complexity Low_complexity 1 26 0 2174 125 0 7 chr6 80452443 80452746 -101962496 + AluSx SINE Alu 1 301 -11 355 293 71 14 chr6 80452857 80452997 -101962245 - MIR SINE MIR -62 200 53 29 0 0 0 chr6 80453005 80453034 -101962208 + AT_rich Low_complexity Low_complexity 1 29 0 776 169 0 0 chr6 80453034 80453152 -101962090 - FLAM_C SINE Alu -15 118 1 36 53 0 0 chr6 80453405 80453462 -101961780 + AT_rich Low_complexity Low_complexity 1 57 0 415 107 27 13 chr6 80454016 80454091 -101961151 + L1MD3 LINE L1 7904 7979 -16 1984 141 3 7 chr6 80454361 80454659 -101960583 + AluSx SINE Alu 1 297 -15 1399 145 189 8 chr6 80454680 80454928 -101960314 + AluSg1 SINE Alu 1 293 -16 2392 85 7 0 chr6 80455069 80455363 -101959879 - AluSc SINE Alu -13 296 1 1053 54 8 0 chr6 80455515 80455670 -101959572 + AluY SINE Alu 152 307 0 1679 162 0 44 chr6 80455849 80455959 -101959283 + AluSx SINE Alu 25 138 -174 2120 117 0 7 chr6 80455959 80456265 -101958977 + AluSg SINE Alu 1 304 0 1679 162 0 44 chr6 80456265 80456449 -101958793 + AluSx SINE Alu 138 307 -5 323 292 26 45 chr6 80456463 80456617 -101958625 + MER5A DNA MER1_type 1 151 -38 2146 107 24 13 chr6 80456625 80456923 -101958319 - AluSc SINE Alu -8 301 1 2249 101 3 0 chr6 80456945 80457241 -101958001 - AluSp SINE Alu -16 297 1 2267 105 3 7 chr6 80457494 80457800 -101957442 + AluSg SINE Alu 2 306 -4 2001 112 30 30 chr6 80457839 80458135 -101957107 + AluSq SINE Alu 1 296 -17 858 155 0 0 chr6 80458254 80458383 -101956859 - FLAM_C SINE Alu -4 129 1 1003 218 18 18 chr6 80458420 80458704 -101956538 - AluSc SINE Alu -14 295 12 2846 7 7 0 chr6 80458985 80459292 -101955950 - AluYa5 SINE Alu -2 309 1 776 178 0 0 chr6 80459368 80459486 -101955756 - FLAM_C SINE Alu -15 118 1 1882 141 3 3 chr6 80459560 80459844 -101955398 - AluJb SINE Alu -18 294 11 2230 112 3 3 chr6 80460022 80460318 -101954924 + AluSp SINE Alu 1 296 -17 481 127 114 0 chr6 80460350 80460483 -101954759 - AluSg/x SINE Alu 0 339 198 1086 76 8 0 chr6 80460512 80460644 -101954598 + AluSq/x SINE Alu 1 133 -179 217 329 0 0 chr6 80460863 80460945 -101954297 + C-rich Low_complexity Low_complexity 1 82 0 211 318 30 23 chr6 80460964 80461096 -101954146 + (CCCTG)n Simple_repeat Simple_repeat 2 134 0 * 458 339 0 0 chr6 80461033 80461213 -101954029 + C-rich Low_complexity Low_complexity 1 180 0 1811 189 16 19 chr6 80461445 80461811 -101953431 + MLT1A1 LTR MaLR 1 365 0 2247 109 27 0 chr6 80461976 80462270 -101952972 + AluSx SINE Alu 1 302 -10 1105 120 6 18 chr6 80462270 80462437 -101952805 + AluSp SINE Alu 135 299 -14 35 24 0 0 chr6 80462586 80462628 -101952614 + AT_rich Low_complexity Low_complexity 1 42 0 326 85 43 0 chr6 80462632 80462679 -101952563 - Alu SINE Alu -5 297 249 6570 71 15 43 chr6 80462853 80463856 -101951386 + SVA Other Other 430 1405 0 2367 48 10 7 chr6 80463877 80464169 -101951073 + AluY SINE Alu 1 293 -18 189 0 0 0 chr6 80464279 80464300 -101950942 + (TA)n Simple_repeat Simple_repeat 2 22 0 2477 62 10 13 chr6 80464366 80464671 -101950571 - AluY SINE Alu -7 304 1 296 162 126 72 chr6 80464796 80464907 -101950335 - L1MC4a LINE L1 -1840 5968 5852 945 168 0 13 chr6 80465772 80465947 -101949295 - AluSg/x SINE Alu 0 310 139 2173 116 24 0 chr6 80465954 80466248 -101948994 - AluSx SINE Alu -11 301 1 2295 108 0 7 chr6 80466699 80467006 -101948236 - AluSg SINE Alu -5 305 1 2257 115 7 0 chr6 80467150 80467455 -101947787 - AluSx SINE Alu -5 307 1 826 121 0 8 chr6 80467481 80467613 -101947629 + AluJo SINE Alu 3 133 -169 734 182 65 19 chr6 80467835 80467989 -101947253 + AluJo SINE Alu 137 297 -15 373 197 0 0 chr6 80468026 80468092 -101947150 - L2 LINE L2 0 3272 3207 532 316 17 23 chr6 80468538 80468712 -101946530 + MIR SINE MIR 20 192 -70 730 280 4 51 chr6 80468832 80469089 -101946153 + MIR SINE MIR 18 262 0 747 151 0 96 chr6 80469280 80469393 -101945849 + AluJo/FLAM SINE Alu 2 100 -202 2036 102 0 27 chr6 80469393 80469687 -101945555 - AluSc SINE Alu -18 291 6 747 151 0 96 chr6 80469687 80469719 -101945523 + AluJo/FLAM SINE Alu 100 133 -169 1684 185 50 28 chr6 80469725 80470082 -101945160 - MLT1A1 LTR MaLR 0 365 1 1199 105 6 0 chr6 80470092 80470254 -101944988 - AluSg/x SINE Alu -13 297 135 1711 178 7 7 chr6 80470259 80470552 -101944690 - AluJo SINE Alu -19 293 1 2199 75 3 59 chr6 80470563 80470901 -101944341 - AluSp SINE Alu 0 313 5 1283 214 4 8 chr6 80470927 80471179 -101944063 + AluJo SINE Alu 45 295 -17 1499 147 0 0 chr6 80471193 80471418 -101943824 + AluSg/x SINE Alu 82 306 -4 2128 119 0 23 chr6 80471496 80471799 -101943443 - AluSx SINE Alu -16 296 1 2101 115 0 10 chr6 80472237 80472548 -101942694 - AluSq SINE Alu 0 308 1 570 270 79 11 chr6 80472860 80473049 -101942193 + MIR SINE MIR 3 204 -58 236 256 85 37 chr6 80473086 80473168 -101942074 + L2 LINE L2 3227 3312 -1 22 35 0 0 chr6 80473207 80473236 -101942006 + AT_rich Low_complexity Low_complexity 1 29 0 333 203 142 61 chr6 80473350 80473498 -101941744 + L1ME1 LINE L1 1568 1727 -4813 1813 164 27 7 chr6 80473505 80473798 -101941444 + AluJo SINE Alu 5 303 -9 210 191 0 0 chr6 80473930 80473972 -101941270 + GA-rich Low_complexity Low_complexity 3 44 0 468 213 79 74 chr6 80473973 80474189 -101941053 + L1ME1 LINE L1 1704 1920 -4620 2147 175 42 11 chr6 80474193 80474627 -101940615 + L1ME1 LINE L1 5818 6264 -296 675 191 0 29 chr6 80474629 80474765 -101940477 + AluJo/FLAM SINE Alu 2 133 -179 2295 108 7 0 chr6 80474767 80475072 -101940170 + AluSx SINE Alu 1 307 -5 396 292 83 31 chr6 80475103 80475295 -101939947 + L2 LINE L2 3112 3313 0 192 353 228 6 chr6 80476994 80477345 -101937897 + L3 LINE CR1 430 858 -719 407 177 94 21 chr6 80477351 80477447 -101937795 + L1MD3 LINE L1 7742 7844 -151 774 155 9 0 chr6 80477449 80477565 -101937677 + FLAM_C SINE Alu 2 118 -25 724 116 47 31 chr6 80477589 80477718 -101937524 + L1MD3 LINE L1 7850 7980 -15 1976 121 18 0 chr6 80477726 80478094 -101937148 + AluSg SINE Alu 3 375 0 1832 100 21 0 chr6 80478117 80478356 -101936886 + AluSx SINE Alu 54 297 -15 214 240 73 62 chr6 80478383 80478479 -101936763 + L3 LINE CR1 1164 1260 -317 2200 124 10 0 chr6 80478622 80478928 -101936314 + AluSx SINE Alu 1 309 -3 2058 121 30 7 chr6 80478946 80479251 -101935991 + AluSx SINE Alu 1 312 0 251 151 164 41 chr6 80479296 80479369 -101935873 + MIR SINE MIR 102 183 -79 1395 180 39 42 chr6 80479425 80479736 -101935506 + AluJo SINE Alu 1 310 -2 2039 138 0 3 chr6 80479884 80480180 -101935062 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr6 80480190 80480213 -101935029 + AT_rich Low_complexity Low_complexity 1 23 0 2229 110 0 0 chr6 80480214 80480504 -101934738 + AluSc SINE Alu 1 290 -19 260 286 29 9 chr6 80480504 80480609 -101934633 + (TATG)n Simple_repeat Simple_repeat 2 108 0 453 275 143 31 chr6 80480637 80480924 -101934318 + L2 LINE L2 2991 3309 -4 902 220 127 8 chr6 80481006 80481265 -101933977 + L1ME1 LINE L1 5549 5838 -328 1473 115 15 0 chr6 80481265 80481465 -101933777 + AluSq SINE Alu 14 216 -97 802 169 20 14 chr6 80481465 80481613 -101933629 - AluJb SINE Alu -37 275 127 2278 74 11 3 chr6 80481627 80481911 -101933331 - AluY SINE Alu -24 287 2 816 184 49 6 chr6 80481914 80482077 -101933165 - AluSg/x SINE Alu -20 292 123 309 146 127 0 chr6 80482081 80482136 -101933106 - AluJ/FLAM SINE Alu -240 62 1 1016 151 272 4 chr6 80482136 80482375 -101932867 - AluYb8 SINE Alu -3 315 13 799 187 212 0 chr6 80482883 80483081 -101932161 + AluJb SINE Alu 53 292 -20 1644 137 111 0 chr6 80483774 80484036 -101931206 + AluSp SINE Alu 1 291 -22 264 178 89 0 chr6 80484157 80484202 -101931040 + Alu SINE Alu 1 49 -252 2052 102 33 10 chr6 80490041 80490344 -101924898 - AluSx SINE Alu 0 312 3 2151 105 10 3 chr6 80490588 80490884 -101924358 + AluSx SINE Alu 1 298 -14 1509 91 18 9 chr6 80491920 80492140 -101923102 + AluSx SINE Alu 1 222 -90 2186 111 3 29 chr6 80492364 80492680 -101922562 - AluSx SINE Alu -4 308 1 958 206 5 5 chr6 80492680 80492869 -101922373 - AluJo SINE Alu -4 308 120 347 257 20 10 chr6 80493159 80493260 -101921982 - MIR SINE MIR -37 225 124 1993 109 3 32 chr6 80493265 80493550 -101921692 + AluSq SINE Alu 1 277 -36 36 0 0 0 chr6 80493550 80493586 -101921656 + AT_rich Low_complexity Low_complexity 1 36 0 2145 99 7 0 chr6 80493694 80493976 -101921266 + AluSg SINE Alu 12 295 -15 2025 133 0 3 chr6 80494396 80494716 -101920526 - AluSx SINE Alu 0 319 1 1927 136 7 3 chr6 80494743 80495037 -101920205 - AluJo SINE Alu -13 299 5 2148 123 0 19 chr6 80495238 80495548 -101919694 + AluSx SINE Alu 1 304 -8 1330 110 0 0 chr6 80495687 80495860 -101919382 - AluSp SINE Alu -21 292 120 480 169 0 0 chr6 80495860 80495937 -101919305 - AluSp/q SINE Alu -16 297 221 1098 96 0 0 chr6 80495940 80496075 -101919167 - AluSg1 SINE Alu -174 135 1 2079 105 0 46 chr6 80496084 80496409 -101918833 - AluSx SINE Alu -2 310 1 825 208 39 0 chr6 80496412 80496566 -101918676 + MER20 DNA MER1_type 60 219 0 1208 174 36 22 chr6 80496735 80496959 -101918283 - AluJo SINE Alu -81 231 5 2249 101 3 0 chr6 80496995 80497291 -101917951 + AluSp SINE Alu 1 297 -16 2160 104 24 13 chr6 80497313 80497611 -101917631 + AluSc SINE Alu 1 301 -8 323 292 26 45 chr6 80497619 80497773 -101917469 - MER5A DNA MER1_type -38 151 1 1057 174 0 5 chr6 80497787 80497971 -101917271 - AluJb SINE Alu -5 307 125 216 0 0 0 chr6 80497971 80497995 -101917247 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2155 109 0 7 chr6 80497995 80498279 -101916963 - AluSx SINE Alu -30 282 1 557 322 93 47 chr6 80498388 80498838 -101916404 + MLT1K LTR MaLR 110 580 -8 1555 175 4 18 chr6 80498936 80499210 -101916032 + AluJo SINE Alu 1 270 -42 21 57 0 0 chr6 80499343 80499378 -101915864 + AT_rich Low_complexity Low_complexity 1 35 0 332 304 65 36 chr6 80499527 80499665 -101915577 + MIR SINE MIR 49 190 -72 257 327 186 0 chr6 80499765 80499878 -101915364 - L2 LINE L2 -3 3269 3136 1113 163 70 18 chr6 80500015 80500242 -101915000 + L1MB3 LINE L1 5933 6171 -12 2323 105 0 0 chr6 80500244 80500539 -101914703 - AluSq SINE Alu -18 295 1 22 0 0 0 chr6 80500549 80500571 -101914671 + AT_rich Low_complexity Low_complexity 1 22 0 1811 147 3 27 chr6 80501167 80501459 -101913783 + AluJo SINE Alu 3 287 -25 2112 115 7 0 chr6 80501494 80501782 -101913460 - AluSx SINE Alu -22 290 1 282 116 47 0 chr6 80501934 80501977 -101913265 + MER3 DNA MER1_type 1 45 -164 1158 149 18 143 chr6 80502020 80502379 -101912863 - AluJo SINE Alu 0 318 2 1722 121 68 21 chr6 80502382 80502662 -101912580 - AluSq SINE Alu -20 293 1 854 216 0 29 chr6 80502776 80502947 -101912295 - FRAM SINE Alu -15 161 1 1725 163 46 11 chr6 80502973 80503256 -101911986 + AluJb SINE Alu 1 293 -19 2224 107 7 3 chr6 80503572 80503862 -101911380 - AluSg SINE Alu -17 293 3 920 187 9 80 chr6 80504054 80504191 -101911051 + AluJo SINE Alu 12 128 -184 1795 171 7 3 chr6 80504191 80504495 -101910747 + AluJb SINE Alu 1 305 -7 920 187 9 80 chr6 80504495 80504582 -101910660 + AluJo SINE Alu 128 220 -92 228 143 0 24 chr6 80504582 80504624 -101910618 + Alu SINE Alu 86 126 -176 4196 190 58 26 chr6 80504636 80505451 -101909791 + MER21B LTR ERV1 12 852 -11 245 290 94 29 chr6 80506024 80506089 -101909153 - L1ME3A LINE L1 -8 6162 6103 2307 114 0 0 chr6 80506089 80506395 -101908847 - AluSg SINE Alu -4 306 1 245 290 94 29 chr6 80506395 80506467 -101908775 - L1ME3A LINE L1 -67 6103 6016 405 0 0 0 chr6 80506758 80506803 -101908439 + (CA)n Simple_repeat Simple_repeat 2 46 0 2282 110 7 0 chr6 80506830 80507129 -101908113 - AluSx SINE Alu -11 301 1 1900 158 3 16 chr6 80507231 80507547 -101907695 + AluSx SINE Alu 1 312 0 1991 100 19 0 chr6 80507784 80508045 -101907197 + AluSq SINE Alu 1 266 -47 1896 144 4 0 chr6 80508172 80508490 -101906752 + AluSx SINE Alu 4 322 0 1434 165 22 33 chr6 80508836 80508905 -101906337 - Tigger1 DNA MER2_type -1932 486 418 1762 133 34 20 chr6 80508905 80509199 -101906043 - AluSx SINE Alu -14 298 1 1434 165 22 33 chr6 80509199 80509541 -101905701 - Tigger1 DNA MER2_type -2000 418 1 810 131 15 44 chr6 80509588 80509725 -101905517 + AluJb SINE Alu 1 133 -179 2219 125 3 0 chr6 80510096 80510400 -101904842 - AluSx SINE Alu -7 305 1 1576 169 7 22 chr6 80510896 80511174 -101904068 - AluSx SINE Alu -13 299 26 261 0 0 0 chr6 80511175 80511204 -101904038 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2221 108 3 0 chr6 80511204 80511490 -101903752 - AluSp SINE Alu -26 287 1 903 158 0 0 chr6 80511491 80511624 -101903618 - AluSq/x SINE Alu -179 133 1 988 159 48 31 chr6 80511624 80511851 -101903391 - L1M4 LINE L1 -743 5403 5173 21 0 0 0 chr6 80512332 80512353 -101902889 + AT_rich Low_complexity Low_complexity 1 21 0 2232 100 43 0 chr6 80512475 80512774 -101902468 - AluSq SINE Alu -1 312 1 683 269 198 19 chr6 80512952 80513220 -101902022 + Charlie7 DNA MER1_type 2 317 -2295 2150 118 7 7 chr6 80513227 80513523 -101901719 - AluSx SINE Alu -16 296 1 2184 111 7 0 chr6 80513529 80513817 -101901425 - AluSx SINE Alu -21 291 2 2159 113 0 3 chr6 80513840 80514181 -101901061 - AluSg SINE Alu 0 310 1 444 195 65 110 chr6 80514254 80514306 -101900936 + Charlie7 DNA MER1_type 2319 2372 -240 2134 130 0 0 chr6 80514306 80514607 -101900635 + AluSx SINE Alu 1 301 -11 444 195 65 110 chr6 80514607 80514778 -101900464 + Charlie7 DNA MER1_type 2372 2527 -85 2197 112 7 0 chr6 80514778 80515064 -101900178 + AluSc SINE Alu 1 288 -21 444 195 65 110 chr6 80515064 80515147 -101900095 + Charlie7 DNA MER1_type 2527 2612 0 24 32 0 0 chr6 80515348 80515379 -101899863 + AT_rich Low_complexity Low_complexity 1 31 0 2151 112 0 0 chr6 80515379 80515665 -101899577 - AluSx SINE Alu -21 291 6 247 281 24 40 chr6 80515751 80515906 -101899336 + MER5A DNA MER1_type 1 161 -27 690 220 17 11 chr6 80515911 80516088 -101899154 + MER5B DNA MER1_type 1 178 0 502 211 11 0 chr6 80516781 80516871 -101898371 + MER3 DNA MER1_type 2 92 -117 2125 122 3 3 chr6 80516961 80517255 -101897987 - AluSx SINE Alu -18 294 1 2382 88 0 0 chr6 80517263 80517558 -101897684 - AluSc SINE Alu -14 295 1 319 188 75 0 chr6 80517560 80517640 -101897602 + MER3 DNA MER1_type 123 208 -1 2142 115 24 0 chr6 80517815 80518102 -101897140 - AluSx SINE Alu -15 297 4 2003 142 7 0 chr6 80518106 80518402 -101896840 - AluJb SINE Alu -14 298 1 2030 118 4 4 chr6 80518472 80518752 -101896490 + AluSx SINE Alu 1 280 -32 1906 153 3 28 chr6 80519290 80519610 -101895632 + AluJb SINE Alu 1 312 0 2260 89 0 35 chr6 80519674 80519987 -101895255 + AluSp SINE Alu 1 302 -11 1495 111 0 5 chr6 80520088 80520319 -101894923 + AluSg/x SINE Alu 84 313 0 1033 138 38 146 chr6 80520707 80520815 -101894427 - MER46A DNA MER2_type -2495 236 171 2225 106 0 0 chr6 80520815 80521098 -101894144 - AluSx SINE Alu -19 293 11 1033 138 38 146 chr6 80521098 80521250 -101893992 - MER46A DNA MER2_type -2560 171 4 21 36 0 0 chr6 80521400 80521428 -101893814 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 80521483 80521515 -101893727 + AT_rich Low_complexity Low_complexity 1 32 0 691 183 48 8 chr6 80521515 80521641 -101893601 - FLAM_C SINE Alu -11 132 2 2385 91 0 0 chr6 80522151 80522447 -101892795 - AluSg SINE Alu -14 296 1 1594 157 44 37 chr6 80523207 80523501 -101891741 + AluJb SINE Alu 1 296 -16 194 255 98 0 chr6 80523668 80523719 -101891523 - L2 LINE L2 -16 3256 3201 473 345 85 7 chr6 80523856 80524206 -101891036 + L2 LINE L2 2672 3069 -244 974 108 0 0 chr6 80525096 80525225 -101890017 + FLAM_C SINE Alu 1 129 -4 2277 98 0 0 chr6 80526172 80526457 -101888785 + AluSx SINE Alu 1 285 -27 189 74 0 0 chr6 80526463 80526490 -101888752 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 212 298 149 8 chr6 80526848 80526969 -101888273 - MIR SINE MIR -99 163 26 2244 103 10 0 chr6 80527494 80527785 -101887457 - AluSx SINE Alu -16 296 3 222 260 91 13 chr6 80528762 80528839 -101886403 + MIR SINE MIR 12 94 -168 252 0 0 0 chr6 80529545 80529573 -101885669 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2252 83 7 3 chr6 80529578 80529868 -101885374 - AluY SINE Alu -20 291 1 2328 119 0 0 chr6 80529873 80530185 -101885057 - AluSq SINE Alu -1 312 1 833 148 0 22 chr6 80531044 80531179 -101884063 - FLAM_C SINE Alu 0 133 2 2616 32 0 13 chr6 80531914 80532224 -101883018 + AluY SINE Alu 2 307 -4 1894 177 3 10 chr6 80533072 80533383 -101881859 - AluJo SINE Alu -2 310 2 515 303 31 54 chr6 80533617 80533878 -101881364 - L2 LINE L2 -597 2717 2463 2464 75 0 3 chr6 80534194 80534499 -101880743 + AluSq SINE Alu 1 304 -9 269 294 109 30 chr6 80534840 80535041 -101880201 + MIR SINE MIR 20 236 -26 2209 127 0 0 chr6 80535409 80535701 -101879541 - AluSx SINE Alu -15 297 6 1973 153 0 10 chr6 80535729 80536024 -101879218 + AluJb SINE Alu 1 292 -20 309 234 21 0 chr6 80536078 80536172 -101879070 + MIR SINE MIR 167 262 0 1751 151 12 74 chr6 80536487 80536635 -101878607 + AluJb SINE Alu 1 120 -192 2537 55 3 0 chr6 80536635 80536945 -101878297 + AluY SINE Alu 1 311 0 1751 151 12 74 chr6 80536945 80537121 -101878121 + AluJb SINE Alu 120 305 -7 344 193 0 57 chr6 80537189 80537277 -101877965 + L2 LINE L2 3189 3271 -42 360 193 34 34 chr6 80537367 80537455 -101877787 + L1MC5 LINE L1 7317 7404 -557 1199 211 81 27 chr6 80537464 80537586 -101877656 + L1MC5 LINE L1 7473 7587 -374 2534 69 0 0 chr6 80537586 80537892 -101877350 + AluSx SINE Alu 1 306 -6 1199 211 81 27 chr6 80537892 80537936 -101877306 + L1MC5 LINE L1 7587 7627 -334 1959 57 0 46 chr6 80537936 80538226 -101877016 - AluY SINE Alu 0 312 35 1199 211 81 27 chr6 80538226 80538464 -101876778 + L1MC5 LINE L1 7627 7901 -60 570 220 85 19 chr6 80538774 80538942 -101876300 - L1M1 LINE L1 -648 5514 5352 297 0 0 0 chr6 80539906 80539939 -101875303 + (CCCCCG)n Simple_repeat Simple_repeat 4 36 0 1870 133 26 32 chr6 80540892 80541200 -101874042 - AluJo SINE Alu -6 306 1 278 247 27 0 chr6 80541240 80541313 -101873929 - MER116 DNA Mariner -4 76 2 654 258 67 70 chr6 80541865 80542179 -101873063 + MLT2D LTR ERVL 91 403 -11 267 189 19 0 chr6 80542179 80542232 -101873010 - MER5A DNA MER1_type -92 97 44 4731 169 93 23 chr6 80542307 80542676 -101872566 - L1MC3 LINE L1 0 7785 7443 2143 91 0 30 chr6 80542676 80542973 -101872269 - AluSc SINE Alu -21 288 1 4731 169 93 23 chr6 80542973 80543647 -101871595 - L1MC3 LINE L1 -342 7443 6669 1385 204 51 7 chr6 80543692 80543966 -101871276 - AluJo SINE Alu -26 286 1 23 0 0 0 chr6 80544065 80544088 -101871154 + AT_rich Low_complexity Low_complexity 1 23 0 2233 89 21 3 chr6 80544088 80544370 -101870872 - AluSq SINE Alu -26 287 1 225 209 0 0 chr6 80544372 80544415 -101870827 + T-rich Low_complexity Low_complexity 1 43 0 2309 94 10 0 chr6 80544504 80544931 -101870311 - AluSq SINE Alu 0 430 1 1479 118 68 62 chr6 80544980 80545177 -101870065 - MER33 DNA MER1_type -2262 323 122 2400 95 0 19 chr6 80545177 80545494 -101869748 - AluSx SINE Alu -1 311 1 1479 118 68 62 chr6 80545494 80545617 -101869625 - MER33 DNA MER1_type -2463 122 1 289 226 17 78 chr6 80545734 80545849 -101869393 + MIR SINE MIR 119 226 -36 2244 101 0 7 chr6 80545899 80546196 -101869046 - AluSq SINE Alu -18 295 1 6689 64 16 56 chr6 80546206 80548154 -101867088 - SVA Other Other -518 1386 1 203 304 43 0 chr6 80548240 80548355 -101866887 + L2 LINE L2 3150 3269 -3 487 279 66 16 chr6 80548670 80548853 -101866389 + MIR SINE MIR 26 217 -45 577 282 38 19 chr6 80549031 80549240 -101866002 - MIR SINE MIR -44 218 6 775 183 8 0 chr6 80549923 80550054 -101865188 - FLAM_C SINE Alu -1 132 1 2419 92 0 3 chr6 80550754 80551058 -101864184 + AluSg SINE Alu 2 304 -6 246 81 0 0 chr6 80551244 80551281 -101863961 + (CA)n Simple_repeat Simple_repeat 2 38 0 711 111 46 72 chr6 80551281 80551434 -101863808 + L1MA9 LINE L1 6164 6312 0 2206 122 3 0 chr6 80552673 80552977 -101862265 + AluSx SINE Alu 3 307 -5 23 33 0 0 chr6 80553096 80553126 -101862116 + AT_rich Low_complexity Low_complexity 1 30 0 968 222 129 4 chr6 80553438 80553663 -101861579 + MLT1J LTR MaLR 52 304 -207 2358 99 3 0 chr6 80553694 80553998 -101861244 + AluSq SINE Alu 1 305 -8 1565 164 53 26 chr6 80554045 80554349 -101860893 - AluJo SINE Alu 0 312 1 222 118 0 0 chr6 80554358 80554392 -101860850 + (T)n Simple_repeat Simple_repeat 1 34 0 1606 147 74 0 chr6 80554603 80554861 -101860381 - AluJb SINE Alu -31 281 5 444 167 39 0 chr6 80554868 80554946 -101860296 + MLT1J LTR MaLR 407 487 -24 667 285 124 27 chr6 80554997 80555545 -101859697 - L1M4 LINE L1 -1313 4833 4233 2163 147 0 3 chr6 80555548 80555860 -101859382 - AluJb SINE Alu -1 311 1 185 0 40 0 chr6 80556565 80556590 -101858652 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 734 187 0 29 chr6 80557080 80557219 -101858023 + AluJo SINE Alu 1 135 -177 477 124 31 0 chr6 80557221 80557318 -101857924 + (TA)n Simple_repeat Simple_repeat 2 101 0 1998 150 0 23 chr6 80557327 80557633 -101857609 + AluSx SINE Alu 1 299 -13 2169 119 65 34 chr6 80557653 80558005 -101857237 - MLT1A1 LTR MaLR -2 363 1 2230 104 0 26 chr6 80558077 80558385 -101856857 - AluSx SINE Alu -12 300 1 882 215 6 0 chr6 80558395 80558558 -101856684 - AluJo/FRAM SINE Alu -2 300 137 1282 107 24 115 chr6 80558561 80558787 -101856455 - AluSx SINE Alu 0 312 67 252 0 0 0 chr6 80558787 80558815 -101856427 + (TA)n Simple_repeat Simple_repeat 2 29 0 2005 123 30 23 chr6 80558815 80559116 -101856126 - AluSg SINE Alu -7 303 1 1282 107 24 115 chr6 80559116 80559186 -101856056 - AluSx SINE Alu -243 69 62 559 138 0 5 chr6 80559186 80559383 -101855859 + AluSx SINE Alu 15 308 -1 411 133 0 0 chr6 80559583 80559643 -101855599 - AluS SINE Alu -241 60 1 230 152 43 0 chr6 80559693 80559739 -101855503 - Charlie7 DNA MER1_type -13 2599 2552 3182 139 140 30 chr6 80559742 80559853 -101855389 - MER39 LTR ERV1 -2 705 608 2516 58 0 7 chr6 80559853 80560161 -101855081 - AluY SINE Alu -5 306 1 3182 139 140 30 chr6 80560161 80560684 -101854558 - MER39 LTR ERV1 -99 608 1 6540 131 11 9 chr6 80560739 80561809 -101853433 + L1MA4 LINE L1 5222 6295 -5 270 208 19 0 chr6 80561865 80561918 -101853324 - Charlie7 DNA MER1_type -2558 54 1 200 200 0 67 chr6 80562332 80562392 -101852850 - L2 LINE L2 -16 3297 3242 276 30 0 0 chr6 80563197 80563230 -101852012 + (CA)n Simple_repeat Simple_repeat 2 34 0 2380 99 0 0 chr6 80563317 80563620 -101851622 - AluSg SINE Alu -7 303 1 6364 149 33 7 chr6 80564007 80565280 -101849962 - L1MA10 LINE L1 -7 6327 5026 222 37 0 0 chr6 80565435 80565462 -101849780 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 435 197 0 0 chr6 80565490 80565566 -101849676 + L1M3c LINE L1 913 988 -5153 484 226 24 0 chr6 80566264 80566388 -101848854 + FRAM SINE Alu 43 169 -7 2234 126 45 25 chr6 80566866 80567223 -101848019 + THE1B LTR MaLR 1 364 0 180 263 0 0 chr6 80567338 80567376 -101847866 - L2 LINE L2 -22 3250 3213 2368 95 0 0 chr6 80567425 80567721 -101847521 - AluSg SINE Alu -14 296 1 733 178 0 0 chr6 80567744 80567862 -101847380 - FLAM_C SINE Alu -15 118 1 185 185 123 31 chr6 80567870 80567935 -101847307 - MIR SINE MIR -108 154 84 913 155 54 6 chr6 80568491 80568659 -101846583 + AluSg/x SINE Alu 87 262 -50 694 103 77 0 chr6 80568840 80568957 -101846285 - L1MC2 LINE L1 -403 5941 5816 809 140 0 22 chr6 80569199 80569335 -101845907 + FLAM_C SINE Alu 1 133 0 1319 100 6 0 chr6 80570531 80570701 -101844541 - AluSg/x SINE Alu -17 295 125 1095 141 65 0 chr6 80570717 80570901 -101844341 + L1PB4 LINE L1 5958 6153 -3 2790 3 0 13 chr6 80570916 80571218 -101844024 + AluYa5 SINE Alu 1 298 -13 1564 231 15 3 chr6 80571646 80571980 -101843262 + MER58B DNA MER1_type 4 341 0 183 319 0 0 chr6 80572151 80572198 -101843044 - L2 LINE L2 -16 3256 3210 7848 28 0 0 chr6 80572232 80573140 -101842102 - L1PA5 LINE L1 -1578 4568 3661 7455 41 0 1 chr6 80573140 80574739 -101840503 + L1PA5 LINE L1 4542 6139 -15 426 20 0 0 chr6 80574739 80574790 -101840452 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr6 80574836 80574864 -101840378 + AT_rich Low_complexity Low_complexity 1 28 0 1065 190 49 8 chr6 80574881 80575128 -101840114 - MER33 DNA MER1_type -67 257 1 313 132 0 0 chr6 80575135 80575188 -101840054 - MIR SINE MIR -63 199 147 290 285 51 32 chr6 80575534 80575692 -101839550 - MER117 DNA MER1_type -36 161 1 185 300 221 30 chr6 80576951 80577088 -101838154 + L2 LINE L2 1921 2031 -1283 303 49 0 0 chr6 80577088 80577129 -101838113 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 1387 197 83 8 chr6 80577131 80577395 -101837847 - AluJo SINE Alu -28 284 1 185 300 221 30 chr6 80577395 80577621 -101837621 + L2 LINE L2 2031 2357 -957 2247 114 17 0 chr6 80578551 80578850 -101836392 - AluSx SINE Alu -8 304 1 267 299 41 21 chr6 80579176 80579273 -101835969 + MIR3 SINE MIR 4 102 -106 1816 147 0 21 chr6 80579766 80580051 -101835191 + AluJo SINE Alu 14 292 -20 998 164 0 0 chr6 80580758 80580923 -101834319 - L1PA15 LINE L1 0 6165 6001 504 239 51 29 chr6 80581186 80581324 -101833918 - MIR SINE MIR -74 188 48 22 0 0 0 chr6 80581603 80581625 -101833617 + AT_rich Low_complexity Low_complexity 1 22 0 841 156 0 7 chr6 80581653 80581788 -101833454 + AluJb SINE Alu 1 134 -178 782 232 154 31 chr6 80582148 80582509 -101832733 + MLT1J2 LTR MaLR 31 437 -9 33 25 0 0 chr6 80583798 80583838 -101831404 + GC_rich Low_complexity Low_complexity 1 40 0 252 86 0 0 chr6 80584415 80584450 -101830792 + (CA)n Simple_repeat Simple_repeat 1 35 0 206 228 18 0 chr6 80585839 80585896 -101829346 + L2 LINE L2 3256 3313 0 2164 123 3 13 chr6 80585949 80586265 -101828977 + AluSq SINE Alu 1 313 0 2049 144 0 0 chr6 80586287 80586579 -101828663 + AluSx SINE Alu 1 292 -20 260 252 19 115 chr6 80586579 80586619 -101828623 + L1ME4a LINE L1 5731 5773 -348 2468 138 43 17 chr6 80586619 80587040 -101828202 + MSTB1 LTR MaLR 1 432 0 260 252 19 115 chr6 80587040 80587159 -101828083 + L1ME4a LINE L1 5773 5852 -269 2778 94 3 0 chr6 80587159 80587522 -101827720 - THE1B LTR MaLR 0 364 1 260 252 19 115 chr6 80587522 80587658 -101827584 + L1ME4a LINE L1 5852 5999 -122 1906 131 100 81 chr6 80587918 80588338 -101826904 + MSTA LTR MaLR 1 428 0 823 311 123 14 chr6 80588370 80588720 -101826522 - MLT2F LTR ERVL -76 587 200 385 258 45 56 chr6 80589170 80589438 -101825804 - L1ME4a LINE L1 -51 6070 5806 2468 63 7 0 chr6 80589438 80589739 -101825503 + AluSp SINE Alu 1 303 -10 323 276 32 41 chr6 80589772 80589895 -101825347 + HAL1 LINE L1 1626 1747 -760 281 202 144 19 chr6 80590223 80590327 -101824915 + MER104 DNA Tc2 4 120 -60 2355 226 133 32 chr6 80590586 80591068 -101824174 - MER21B LTR ERV1 -2 861 276 2160 134 3 3 chr6 80591068 80591375 -101823867 + AluJo SINE Alu 1 307 -5 2355 226 133 32 chr6 80591375 80591636 -101823606 - MER21B LTR ERV1 -587 276 43 320 239 15 0 chr6 80591639 80591706 -101823536 - MER21B LTR ERV1 -777 86 19 393 225 0 25 chr6 80591810 80591890 -101823352 - MER21B LTR ERV1 -773 90 13 370 220 113 47 chr6 80592398 80592548 -101822694 - MLT1H LTR MaLR -389 160 1 333 100 0 0 chr6 80592641 80592691 -101822551 + (GGGGA)n Simple_repeat Simple_repeat 5 54 0 223 172 17 17 chr6 80592725 80592783 -101822459 + GA-rich Low_complexity Low_complexity 1 58 0 785 218 137 0 chr6 80592831 80593042 -101822200 + L1MC5 LINE L1 6967 7206 -755 673 192 115 11 chr6 80593042 80593146 -101822096 + MER3 DNA MER1_type 1 93 -116 2194 128 0 0 chr6 80593146 80593443 -101821799 + AluSx SINE Alu 1 297 -15 673 192 115 11 chr6 80593443 80593476 -101821766 + MER3 DNA MER1_type 93 121 -88 216 0 0 0 chr6 80593476 80593500 -101821742 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 673 192 115 11 chr6 80593500 80593543 -101821699 + MER3 DNA MER1_type 121 201 -8 260 227 0 0 chr6 80593508 80593552 -101821690 - MER3 DNA MER1_type -119 90 47 * 806 199 81 48 chr6 80593556 80593828 -101821414 + L1MC5 LINE L1 7205 7485 -476 1406 159 0 20 chr6 80593831 80594076 -101821166 + L1M2 LINE L1 1 240 -6790 1288 150 12 117 chr6 80594076 80594311 -101820931 + L1M2 LINE L1 4972 5162 -1944 1700 106 42 15 chr6 80594311 80594576 -101820666 + L1PB2 LINE L1 5877 6148 -3 1288 150 12 117 chr6 80594576 80594681 -101820561 + L1M2 LINE L1 5162 5276 -1830 * 1353 141 43 16 chr6 80594678 80594934 -101820308 + L1M2 LINE L1 6029 6291 -815 1905 119 79 4 chr6 80594936 80595214 -101820028 + AluSc SINE Alu 1 299 -10 1117 176 42 32 chr6 80595223 80595439 -101819803 + AluJo SINE Alu 72 289 -23 974 106 12 19 chr6 80595452 80595612 -101819630 + L1M2 LINE L1 6290 6448 -803 1910 176 0 3 chr6 80595614 80595920 -101819322 + AluJb SINE Alu 1 305 -7 1122 165 10 0 chr6 80595935 80596129 -101819113 + L1M2 LINE L1 6531 6726 -525 2627 102 5 24 chr6 80596129 80596500 -101818742 + THE1B LTR MaLR 1 364 0 11985 82 15 3 chr6 80596500 80598061 -101817181 + THE1B-int LTR MaLR 1 1580 0 1873 112 92 75 chr6 80598061 80598232 -101817010 + THE1B LTR MaLR 1 168 -196 2224 125 0 0 chr6 80598232 80598527 -101816715 + AluSq SINE Alu 1 295 -18 1873 112 92 75 chr6 80598527 80598713 -101816529 + THE1B LTR MaLR 168 364 0 1257 161 13 17 chr6 80648756 80648986 -101766256 - L1 LINE L1 -2082 4064 3836 639 291 56 5 chr6 80649027 80649223 -101766019 + MIR SINE MIR 13 218 -44 21 57 0 0 chr6 80649242 80649277 -101765965 + AT_rich Low_complexity Low_complexity 1 35 0 1220 176 101 7 chr6 80649346 80649642 -101765600 - MER33 DNA MER1_type 0 324 1 382 244 12 0 chr6 80649681 80649767 -101765475 - MLT1H1 LTR MaLR 0 555 469 407 292 39 32 chr6 80649935 80650089 -101765153 + MIR3 SINE MIR 43 197 -11 542 283 64 16 chr6 80650290 80650477 -101764765 + MIR SINE MIR 26 221 -41 643 285 83 21 chr6 80650618 80650860 -101764382 - MIR SINE MIR 0 262 6 22 0 0 0 chr6 80651362 80651384 -101763858 + AT_rich Low_complexity Low_complexity 1 22 0 987 239 0 0 chr6 80652188 80652376 -101762866 + MER58A DNA MER1_type 2 189 -35 24 0 0 0 chr6 80652551 80652575 -101762667 + AT_rich Low_complexity Low_complexity 1 24 0 335 281 215 33 chr6 80653360 80653630 -101761612 - L2 LINE L2 -988 2326 2008 213 305 0 17 chr6 80653844 80653903 -101761339 - L2 LINE L2 -1 3271 3214 284 327 220 0 chr6 80654055 80654205 -101761037 + L2 LINE L2 3089 3271 -1 1174 126 39 48 chr6 80654561 80654767 -101760475 - AluJo SINE Alu -108 204 1 281 247 27 0 chr6 80654807 80654880 -101760362 - MER116 DNA Mariner -4 76 2 651 261 67 70 chr6 80655432 80655746 -101759496 + MLT2D LTR ERVL 91 403 -11 287 189 19 0 chr6 80655746 80655799 -101759443 - MER5A DNA MER1_type -92 97 44 1779 165 81 0 chr6 80655874 80656231 -101759011 - L1MC3 LINE L1 0 7785 7400 349 232 111 0 chr6 80656332 80656431 -101758811 - L1MC4 LINE L1 -945 7097 6988 1493 216 58 41 chr6 80656436 80656836 -101758406 + MER114 LTR ERV 37 446 -202 3619 134 27 58 chr6 80656836 80657508 -101757734 + L1MA8 LINE L1 5641 6291 0 1493 216 58 41 chr6 80657508 80657542 -101757700 + MER114 LTR ERV 446 478 -170 186 328 35 17 chr6 80657768 80657884 -101757358 + L2 LINE L2 2934 3051 -221 251 273 16 66 chr6 80658123 80658201 -101757041 + Charlie7 DNA MER1_type 3 74 -2538 2435 78 0 7 chr6 80658201 80658510 -101756732 - AluY SINE Alu -4 307 1 251 273 16 66 chr6 80658510 80658552 -101756690 + Charlie7 DNA MER1_type 74 117 -2495 894 195 100 9 chr6 80658667 80658898 -101756344 + L1MC5 LINE L1 7650 7901 -60 581 220 85 19 chr6 80659208 80659376 -101755866 - L1M1 LINE L1 -648 5514 5352 297 0 0 0 chr6 80660340 80660373 -101754869 + (CCCCCG)n Simple_repeat Simple_repeat 4 36 0 1956 153 0 10 chr6 80661000 80661295 -101753947 + AluJb SINE Alu 1 292 -20 185 333 0 0 chr6 80661297 80661351 -101753891 - MIR SINE MIR -15 247 194 * 345 223 21 0 chr6 80661349 80661443 -101753799 + MIR SINE MIR 167 262 0 1732 150 12 77 chr6 80661758 80661907 -101753335 + AluJb SINE Alu 1 119 -193 2452 61 3 0 chr6 80661907 80662217 -101753025 + AluY SINE Alu 1 311 0 1732 150 12 77 chr6 80662217 80662393 -101752849 + AluJb SINE Alu 119 305 -7 374 193 0 57 chr6 80662461 80662549 -101752693 + L2 LINE L2 3189 3271 -42 350 204 34 34 chr6 80662639 80662727 -101752515 + L1MC5 LINE L1 7317 7404 -557 335 198 99 27 chr6 80662736 80662847 -101752395 + L1MC5 LINE L1 7473 7591 -370 2515 69 0 0 chr6 80662858 80663164 -101752078 + AluSx SINE Alu 1 306 -6 2042 119 11 0 chr6 80663325 80663610 -101751632 - AluSx SINE Alu -24 288 1 864 196 7 0 chr6 80664253 80664401 -101750841 - AluJo SINE Alu -161 151 3 2645 48 0 0 chr6 80665053 80665364 -101749878 + AluY SINE Alu 1 311 0 857 154 0 0 chr6 80665491 80665614 -101749628 + AluSq/x SINE Alu 1 123 -190 1812 162 13 22 chr6 80666133 80666448 -101748794 + AluJb SINE Alu 1 312 0 22 35 0 0 chr6 80666978 80667007 -101748235 + AT_rich Low_complexity Low_complexity 1 29 0 1279 164 36 16 chr6 80667752 80668002 -101747240 - MER58B DNA MER1_type -31 310 56 1274 154 98 36 chr6 80668025 80668330 -101746912 + MER33 DNA MER1_type 1 324 0 864 140 0 22 chr6 80669537 80669673 -101745569 - FLAM_C SINE Alu 0 133 1 1047 285 41 8 chr6 80670296 80670686 -101744556 + LTR16A LTR ERVL 24 426 -24 2232 107 0 3 chr6 80671096 80671395 -101743847 + AluSx SINE Alu 1 298 -14 1989 151 0 7 chr6 80671405 80671703 -101743539 + AluJo SINE Alu 6 301 -11 7647 125 5 4 chr6 80671748 80673733 -101741509 - L1MA2 LINE L1 0 6304 4316 216 0 0 0 chr6 80673733 80673757 -101741485 + (T)n Simple_repeat Simple_repeat 1 24 0 1923 148 7 3 chr6 80673882 80674180 -101741062 - AluSx SINE Alu -13 299 1 249 217 62 39 chr6 80674187 80674316 -101740926 + Charlie7 DNA MER1_type 2479 2610 -2 683 284 64 20 chr6 80674371 80674621 -101740621 - MIR SINE MIR -1 261 1 200 300 0 0 chr6 80675092 80675142 -101740100 + (CAA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr6 80675476 80675497 -101739745 + AT_rich Low_complexity Low_complexity 1 21 0 2834 74 3 0 chr6 80675702 80676054 -101739188 + L1PA13 LINE L1 5809 6161 -2 1392 162 17 4 chr6 80676144 80676378 -101738864 - MER96B DNA MER1_type? -180 237 1 1765 153 45 0 chr6 80676758 80677046 -101738196 - AluJb SINE Alu -11 301 1 2328 100 0 13 chr6 80677646 80677957 -101737285 - AluSp SINE Alu -6 307 1 329 200 124 29 chr6 80680076 80680181 -101735061 + L2 LINE L2 3187 3301 -12 1927 122 41 0 chr6 80680183 80680480 -101734762 + AluSx SINE Alu 1 308 0 1981 100 0 25 chr6 80680691 80680971 -101734271 - AluY SINE Alu -38 273 1 2702 160 60 34 chr6 80680974 80681537 -101733705 - L1MC3 LINE L1 -398 7387 6810 226 259 25 37 chr6 80681537 80681618 -101733624 + LTR48B LTR ERV1 317 396 -248 1363 204 51 7 chr6 80681690 80681964 -101733278 - AluJo SINE Alu -26 286 1 23 0 0 0 chr6 80682063 80682086 -101733156 + AT_rich Low_complexity Low_complexity 1 23 0 2214 89 21 3 chr6 80682086 80682368 -101732874 - AluSq SINE Alu -26 287 1 225 209 0 0 chr6 80682370 80682413 -101732829 + T-rich Low_complexity Low_complexity 1 43 0 2285 94 10 0 chr6 80682502 80682929 -101732313 - AluSq SINE Alu 0 430 1 1559 118 68 62 chr6 80682978 80683175 -101732067 - MER33 DNA MER1_type -2262 323 122 2385 95 0 19 chr6 80683175 80683492 -101731750 - AluSx SINE Alu -1 311 1 1559 118 68 62 chr6 80683492 80683615 -101731627 - MER33 DNA MER1_type -2463 122 1 332 220 15 98 chr6 80683715 80683847 -101731395 + MIR SINE MIR 106 226 -36 2226 101 0 7 chr6 80683897 80684194 -101731048 - AluSq SINE Alu -18 295 1 6589 64 16 56 chr6 80684204 80686151 -101729091 - SVA Other Other -518 1386 1 230 304 43 0 chr6 80686237 80686352 -101728890 + L2 LINE L2 3150 3269 -3 1066 197 38 8 chr6 80686765 80687004 -101728238 - MER33 DNA MER1_type -78 246 1 329 132 0 0 chr6 80687011 80687064 -101728178 - MIR SINE MIR -63 199 147 289 285 51 32 chr6 80687410 80687568 -101727674 - MER117 DNA MER1_type -36 161 1 281 300 221 30 chr6 80688827 80688964 -101726278 + L2 LINE L2 1921 2031 -1283 303 49 0 0 chr6 80688964 80689005 -101726237 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 1376 197 83 8 chr6 80689007 80689271 -101725971 - AluJo SINE Alu -28 284 1 281 300 221 30 chr6 80689271 80689497 -101725745 + L2 LINE L2 2031 2357 -957 1047 123 32 0 chr6 80690427 80690581 -101724661 - AluSg/x SINE Alu -8 304 146 1649 231 15 3 chr6 80691032 80691366 -101723876 + MER58B DNA MER1_type 4 341 0 198 319 0 0 chr6 80691537 80691584 -101723658 - L2 LINE L2 -16 3256 3210 7954 29 0 0 chr6 80691618 80692539 -101722703 - L1PA4 LINE L1 -1578 4568 3648 7117 35 0 1 chr6 80692526 80693889 -101721353 + L1PA4 LINE L1 4542 5903 -252 * 824 183 8 0 chr6 80694555 80694686 -101720556 - FLAM_C SINE Alu -1 132 1 2433 91 0 3 chr6 80695386 80695694 -101719548 + AluSg SINE Alu 2 308 -2 1515 218 0 7 chr6 80696073 80696380 -101718862 + AluSg SINE Alu 5 309 -1 1806 147 0 21 chr6 80696798 80697083 -101718159 + AluJo SINE Alu 14 292 -20 1049 164 0 0 chr6 80697791 80697956 -101717286 - L1PA15 LINE L1 0 6165 6001 548 239 51 29 chr6 80698219 80698357 -101716885 - MIR SINE MIR -74 188 48 22 0 0 0 chr6 80698636 80698658 -101716584 + AT_rich Low_complexity Low_complexity 1 22 0 838 156 0 7 chr6 80698686 80698821 -101716421 + AluJb SINE Alu 1 134 -178 787 232 154 31 chr6 80699181 80699542 -101715700 + MLT1J2 LTR MaLR 31 437 -9 183 278 56 79 chr6 80699977 80700103 -101715139 - MIR SINE MIR -76 186 64 31 0 0 0 chr6 80700840 80700871 -101714371 + GC_rich Low_complexity Low_complexity 1 31 0 252 86 0 0 chr6 80701448 80701483 -101713759 + (CA)n Simple_repeat Simple_repeat 1 35 0 223 228 18 0 chr6 80702872 80702929 -101712313 + L2 LINE L2 3256 3313 0 2153 127 3 13 chr6 80702982 80703298 -101711944 + AluSq SINE Alu 1 313 0 2036 144 0 0 chr6 80703320 80703612 -101711630 + AluSx SINE Alu 1 292 -20 2455 132 44 17 chr6 80703652 80704061 -101711181 + MSTB1 LTR MaLR 1 420 -12 234 152 43 0 chr6 80704167 80704213 -101711029 - Charlie7 DNA MER1_type -13 2599 2552 3183 139 140 30 chr6 80704216 80704327 -101710915 - MER39 LTR ERV1 -2 705 608 2489 58 0 7 chr6 80704327 80704635 -101710607 - AluY SINE Alu -5 306 1 3183 139 140 30 chr6 80704635 80705158 -101710084 - MER39 LTR ERV1 -99 608 1 6593 131 11 9 chr6 80705213 80706283 -101708959 + L1MA4 LINE L1 5222 6295 -5 267 208 19 0 chr6 80706339 80706392 -101708850 - Charlie7 DNA MER1_type -2558 54 1 219 200 0 67 chr6 80706806 80706866 -101708376 - L2 LINE L2 -16 3297 3242 213 276 48 69 chr6 80707271 80707416 -101707826 - MIR SINE MIR -46 216 75 276 30 0 0 chr6 80707671 80707704 -101707538 + (CA)n Simple_repeat Simple_repeat 2 34 0 2360 99 0 0 chr6 80707791 80708094 -101707148 - AluSg SINE Alu -7 303 1 6431 149 33 7 chr6 80708481 80709754 -101705488 - L1MA10 LINE L1 -7 6327 5026 222 37 0 0 chr6 80709909 80709936 -101705306 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 435 197 0 0 chr6 80709964 80710040 -101705202 + L1M3c LINE L1 913 988 -5153 529 202 40 16 chr6 80710738 80710862 -101704380 + FRAM SINE Alu 43 169 -7 2364 126 45 25 chr6 80711340 80711697 -101703545 + THE1B LTR MaLR 1 364 0 193 263 0 0 chr6 80711812 80711850 -101703392 - L2 LINE L2 -22 3250 3213 2346 95 0 0 chr6 80711899 80712195 -101703047 - AluSg SINE Alu -14 296 1 786 178 0 0 chr6 80712218 80712336 -101702906 - FLAM_C SINE Alu -15 118 1 208 182 152 30 chr6 80712344 80712410 -101702832 - MIR SINE MIR -108 154 81 904 155 54 6 chr6 80712965 80713133 -101702109 + AluSg/x SINE Alu 85 260 -50 663 111 74 0 chr6 80713314 80713422 -101701820 - L1MC2 LINE L1 -403 5941 5826 2225 120 0 0 chr6 80713424 80713723 -101701519 - AluSx SINE Alu 0 312 14 581 160 28 0 chr6 80713848 80713954 -101701288 - AluSx SINE Alu -1 308 200 * 752 122 0 0 chr6 80713947 80714045 -101701197 - AluSx SINE Alu -201 112 15 1272 107 24 115 chr6 80714045 80714115 -101701127 + AluSx SINE Alu 62 137 -175 2060 117 30 20 chr6 80714115 80714415 -101700827 + AluSg SINE Alu 1 303 -7 252 0 0 0 chr6 80714415 80714443 -101700799 + (TA)n Simple_repeat Simple_repeat 2 29 0 1272 107 24 115 chr6 80714443 80714669 -101700573 + AluSx SINE Alu 135 312 0 981 213 0 0 chr6 80714672 80714836 -101700406 + FRAM SINE Alu 1 164 -2 2216 104 0 26 chr6 80714846 80715154 -101700088 + AluSx SINE Alu 1 300 -12 2298 119 65 34 chr6 80715226 80715578 -101699664 + MLT1A1 LTR MaLR 1 363 -2 1989 150 0 23 chr6 80715598 80715904 -101699338 - AluSx SINE Alu -13 299 1 477 124 31 0 chr6 80715913 80716010 -101699232 + (TA)n Simple_repeat Simple_repeat 2 101 0 788 187 0 29 chr6 80716012 80716151 -101699091 - AluJo SINE Alu -177 135 1 185 0 40 0 chr6 80716641 80716666 -101698576 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2150 147 0 3 chr6 80717371 80717683 -101697559 + AluJb SINE Alu 1 311 -1 711 285 124 27 chr6 80717686 80718234 -101697008 + L1M4 LINE L1 4233 4833 -1313 446 167 39 0 chr6 80718285 80718363 -101696879 - MLT1J LTR MaLR -24 487 407 1587 147 74 0 chr6 80718370 80718628 -101696614 + AluJb SINE Alu 5 281 -31 222 118 0 0 chr6 80718839 80718873 -101696369 + (A)n Simple_repeat Simple_repeat 1 34 0 235 211 0 0 chr6 80718888 80718926 -101696316 + AluJ/monomer SINE Alu 7 44 -255 180 179 0 0 chr6 80719097 80719136 -101696106 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 1685 220 160 36 chr6 80719406 80719906 -101695336 - MLT1F1 LTR MaLR -5 562 1 266 0 0 29 chr6 80719911 80719946 -101695296 + (TG)n Simple_repeat Simple_repeat 2 35 0 203 260 39 13 chr6 80719947 80720024 -101695218 + MIR SINE MIR 136 214 -48 2086 98 25 4 chr6 80720062 80720387 -101694855 - AluSx SINE Alu 0 333 3 229 265 0 0 chr6 80721317 80721366 -101693876 + MIR SINE MIR 16 64 -198 927 253 112 49 chr6 80721377 80721614 -101693628 - L2 LINE L2 0 3313 3092 2085 93 58 3 chr6 80721614 80721905 -101693337 - AluSp SINE Alu -5 308 2 927 253 112 49 chr6 80721905 80722281 -101692961 - L2 LINE L2 -221 3092 2667 818 233 32 0 chr6 80722281 80722470 -101692772 + MIR SINE MIR 68 262 0 370 261 23 11 chr6 80722667 80722755 -101692487 - MER81 DNA DNA 0 114 26 262 241 198 0 chr6 80724963 80725079 -101690163 - L1ME LINE L1 -633 5488 5350 318 257 144 84 chr6 80726261 80726463 -101688779 + MIR SINE MIR 37 250 -12 210 150 0 0 chr6 80728509 80728549 -101686693 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 242 358 40 28 chr6 80729265 80729441 -101685801 + L2 LINE L2 2805 2982 -290 2363 76 0 0 chr6 80730141 80730430 -101684812 + AluY SINE Alu 1 289 -22 22 0 0 0 chr6 80730435 80730457 -101684785 + AT_rich Low_complexity Low_complexity 1 22 0 1793 144 3 38 chr6 80730461 80730753 -101684489 - AluJo SINE Alu -30 282 1 378 253 71 10 chr6 80731180 80731279 -101683963 - MIR3 SINE MIR -99 109 5 2026 141 3 0 chr6 80731923 80732230 -101683012 - AluSx SINE Alu 0 308 1 2368 141 32 12 chr6 80732251 80732656 -101682586 - L1MB3 LINE L1 -1 6182 5770 466 291 44 39 chr6 80733015 80733197 -101682045 - MER5A DNA MER1_type 0 189 7 281 262 136 10 chr6 80733390 80733493 -101681749 + MER5B DNA MER1_type 63 178 0 684 110 73 44 chr6 80734289 80734425 -101680817 - L1MB3 LINE L1 -1 6182 6043 268 425 37 0 chr6 80734439 80734573 -101680669 + L2 LINE L2 3134 3272 0 446 301 48 42 chr6 80735153 80735319 -101679923 - MIR3 SINE MIR -12 196 30 21 0 0 0 chr6 80735321 80735342 -101679900 + AT_rich Low_complexity Low_complexity 1 21 0 2254 111 0 10 chr6 80735357 80735664 -101679578 - AluSx SINE Alu -8 304 1 1965 118 0 4 chr6 80735987 80736257 -101678985 - AluSx SINE Alu -11 301 33 367 320 54 0 chr6 80736300 80736447 -101678795 - L1MD2 LINE L1 -3 6356 6202 352 320 94 58 chr6 80737190 80737624 -101677618 + L2 LINE L2 1355 1804 -1510 1327 321 76 42 chr6 80737625 80738132 -101677110 + L2 LINE L2 2008 2555 -759 1601 129 63 16 chr6 80738132 80738387 -101676855 - AluJb SINE Alu -2 310 44 1327 321 76 42 chr6 80738387 80738690 -101676552 + L2 LINE L2 2555 2846 -468 244 288 212 30 chr6 80738673 80738871 -101676371 + L2 LINE L2 3080 3313 0 * 336 318 0 9 chr6 80738889 80738999 -101676243 - MER5B DNA MER1_type -60 118 10 476 282 114 7 chr6 80739460 80739609 -101675633 + MIR3 SINE MIR 21 185 -23 221 387 24 8 chr6 80740113 80740237 -101675005 - L2 LINE L2 -568 2746 2621 279 162 147 0 chr6 80741401 80741469 -101673773 + MER116 DNA Mariner 3 80 0 2750 94 3 0 chr6 80742139 80742502 -101672740 - THE1B LTR MaLR 0 364 1 28 29 0 0 chr6 80742528 80742563 -101672679 + AT_rich Low_complexity Low_complexity 1 35 0 1863 131 100 81 chr6 80742898 80743318 -101671924 + MSTA LTR MaLR 1 428 0 706 311 123 14 chr6 80743350 80743700 -101671542 - MLT2F LTR ERVL -76 587 200 321 233 44 61 chr6 80744152 80744380 -101670862 - L1ME4a LINE L1 -53 6068 5845 2430 63 7 0 chr6 80744418 80744719 -101670523 + AluSp SINE Alu 1 303 -10 288 276 32 41 chr6 80744752 80744875 -101670367 + HAL1 LINE L1 1626 1747 -760 247 196 147 20 chr6 80745205 80745307 -101669935 + MER104 DNA Tc2 6 120 -60 1651 187 47 35 chr6 80745566 80745967 -101669275 - MER21B LTR ERV1 -2 861 456 22 35 0 0 chr6 80746012 80746041 -101669201 + AT_rich Low_complexity Low_complexity 1 29 0 2111 147 3 3 chr6 80746048 80746360 -101668882 + AluJo SINE Alu 1 312 0 889 224 157 4 chr6 80746361 80746616 -101668626 - MER21B LTR ERV1 -527 336 43 295 239 15 0 chr6 80746619 80746686 -101668556 - MER21B LTR ERV1 -777 86 19 357 225 0 25 chr6 80746790 80746870 -101668372 - MER21B LTR ERV1 -773 90 13 316 220 113 47 chr6 80747378 80747528 -101667714 - MLT1H LTR MaLR -389 160 1 333 100 0 0 chr6 80747621 80747671 -101667571 + (GGGGA)n Simple_repeat Simple_repeat 5 54 0 223 172 17 17 chr6 80747705 80747763 -101667479 + GA-rich Low_complexity Low_complexity 1 58 0 703 218 137 0 chr6 80747811 80748022 -101667220 + L1MC5 LINE L1 6967 7206 -755 602 192 115 11 chr6 80748022 80748126 -101667116 + MER3 DNA MER1_type 1 93 -116 2192 128 0 0 chr6 80748126 80748423 -101666819 + AluSx SINE Alu 1 297 -15 602 192 115 11 chr6 80748423 80748456 -101666786 + MER3 DNA MER1_type 93 121 -88 216 0 0 0 chr6 80748456 80748480 -101666762 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 602 192 115 11 chr6 80748480 80748523 -101666719 + MER3 DNA MER1_type 121 201 -8 243 214 0 0 chr6 80748490 80748532 -101666710 - MER3 DNA MER1_type -121 88 47 * 708 199 81 48 chr6 80748536 80748808 -101666434 + L1MC5 LINE L1 7205 7485 -476 1297 159 0 20 chr6 80748811 80749056 -101666186 + L1MA9 LINE L1 1 240 -6790 1177 150 12 117 chr6 80749056 80749291 -101665951 + L1MA9 LINE L1 4972 5162 -1944 1654 106 42 15 chr6 80749291 80749556 -101665686 + L1PB2 LINE L1 5877 6148 -3 1177 150 12 117 chr6 80749556 80749661 -101665581 + L1MA9 LINE L1 5162 5276 -1830 * 1250 141 43 16 chr6 80749658 80749914 -101665328 + L1MA9 LINE L1 6029 6291 -815 1927 117 78 4 chr6 80749916 80750197 -101665045 + AluSc SINE Alu 1 302 -7 1136 176 42 32 chr6 80750206 80750422 -101664820 + AluJo SINE Alu 72 289 -23 909 106 12 19 chr6 80750435 80750595 -101664647 + L1MA9 LINE L1 6290 6448 -803 1915 176 0 3 chr6 80750597 80750903 -101664339 + AluJb SINE Alu 1 305 -7 1044 165 10 0 chr6 80750918 80751112 -101664130 + L1MA9 LINE L1 6531 6726 -525 2589 102 5 24 chr6 80751112 80751483 -101663759 + THE1B LTR MaLR 1 364 0 11839 82 15 3 chr6 80751483 80753044 -101662198 + THE1B-int LTR MaLR 1 1580 0 1671 114 97 74 chr6 80753044 80753215 -101662027 + THE1B LTR MaLR 1 167 -197 2227 125 0 0 chr6 80753215 80753510 -101661732 + AluSq SINE Alu 1 295 -18 1671 114 97 74 chr6 80753510 80753688 -101661554 + THE1B LTR MaLR 167 358 -6 696 139 81 47 chr6 80753789 80753815 -101661427 + L1MA9 LINE L1 7090 7114 -158 333 0 0 0 chr6 80753815 80753852 -101661390 + (CA)n Simple_repeat Simple_repeat 2 38 0 696 139 81 47 chr6 80753852 80753997 -101661245 + L1MA9 LINE L1 7114 7267 -5 2182 125 3 0 chr6 80755244 80755548 -101659694 + AluSx SINE Alu 3 307 -5 1478 108 5 0 chr6 80755681 80755876 -101659366 - AluSx SINE Alu -116 196 1 703 176 0 0 chr6 80755894 80756019 -101659223 - MER46A DNA MER2_type -108 128 4 21 36 0 0 chr6 80756169 80756197 -101659045 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 80756253 80756285 -101658957 + AT_rich Low_complexity Low_complexity 1 32 0 691 181 47 8 chr6 80756285 80756412 -101658830 - FLAM_C SINE Alu -11 132 1 2356 91 0 0 chr6 80756921 80757217 -101658025 - AluSg SINE Alu -14 296 1 1590 157 44 37 chr6 80757972 80758266 -101656976 + AluJb SINE Alu 1 296 -16 210 255 98 0 chr6 80758433 80758484 -101656758 - L2 LINE L2 -16 3256 3201 556 355 125 5 chr6 80758621 80758971 -101656271 + L2 LINE L2 2672 3069 -244 965 116 0 0 chr6 80759861 80759990 -101655252 + FLAM_C SINE Alu 1 129 -4 197 241 71 92 chr6 80760419 80760560 -101654682 + MIR SINE MIR 62 199 -63 2246 98 0 0 chr6 80760937 80761222 -101654020 + AluSx SINE Alu 1 285 -27 189 74 0 0 chr6 80761228 80761255 -101653987 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 269 298 156 7 chr6 80761613 80761754 -101653488 - MIR SINE MIR -99 163 2 2237 100 10 0 chr6 80762259 80762550 -101652692 - AluSx SINE Alu -16 296 3 245 286 78 0 chr6 80763527 80763604 -101651638 + MIR SINE MIR 12 94 -168 252 0 0 0 chr6 80764310 80764338 -101650904 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2205 83 7 3 chr6 80764343 80764633 -101650609 - AluY SINE Alu -20 291 1 2327 119 0 0 chr6 80764638 80764950 -101650292 - AluSq SINE Alu -1 312 1 22 0 0 0 chr6 80765795 80765817 -101649425 + AT_rich Low_complexity Low_complexity 1 22 0 835 158 0 0 chr6 80765817 80765944 -101649298 - FLAM_C SINE Alu -5 128 2 2546 32 0 13 chr6 80766679 80766988 -101648254 + AluY SINE Alu 2 306 -5 1903 180 3 10 chr6 80767836 80768147 -101647095 - AluJo SINE Alu -2 310 2 191 209 0 0 chr6 80768335 80768378 -101646864 - L2 LINE L2 -576 2738 2696 585 303 31 54 chr6 80768381 80768642 -101646600 - L2 LINE L2 -597 2717 2463 2425 75 0 3 chr6 80768958 80769263 -101645979 + AluSq SINE Alu 1 304 -9 335 279 119 40 chr6 80769604 80769805 -101645437 + MIR SINE MIR 20 236 -26 2167 85 4 7 chr6 80770030 80770311 -101644931 - AluSg1 SINE Alu -25 284 5 2201 97 0 32 chr6 80770444 80770755 -101644487 - AluSg SINE Alu -9 301 1 285 340 83 32 chr6 80772601 80772757 -101642485 - L2 LINE L2 -17 3255 3092 1020 188 50 23 chr6 80772789 80773007 -101642235 - MER58A DNA MER1_type 0 224 1 2413 83 0 3 chr6 80773028 80773329 -101641913 + AluSp SINE Alu 1 300 -13 222 322 232 16 chr6 80773730 80774277 -101640965 - L2 LINE L2 -685 2629 1965 359 186 93 0 chr6 80774965 80775051 -101640191 - L1MC4 LINE L1 -1336 6706 6613 3055 81 0 0 chr6 80775563 80775972 -101639270 - L1PA13 LINE L1 -19 6144 5736 23 33 0 0 chr6 80777497 80777527 -101637715 + AT_rich Low_complexity Low_complexity 1 30 0 920 156 0 0 chr6 80777544 80777685 -101637557 - AluJb SINE Alu -171 141 1 254 306 117 0 chr6 80778187 80778298 -101636944 - L2 LINE L2 -1061 2253 2130 2506 155 48 54 chr6 80778374 80778891 -101636351 - MER67D LTR ERV1 0 514 1 2427 76 0 10 chr6 80778958 80779262 -101635980 + AluSq SINE Alu 1 301 -12 1263 125 26 30 chr6 80780307 80780539 -101634703 + L1MA7 LINE L1 6036 6266 -25 2571 62 0 3 chr6 80780721 80781028 -101634214 + AluY SINE Alu 2 307 -4 183 129 0 0 chr6 80781582 80781613 -101633629 + (TG)n Simple_repeat Simple_repeat 2 32 0 223 192 27 0 chr6 80781664 80781737 -101633505 + (TA)n Simple_repeat Simple_repeat 1 75 0 296 224 60 45 chr6 80781746 80781947 -101633295 - L1MEd LINE L1 -3792 2337 2134 679 275 114 33 chr6 80782257 80782653 -101632589 - L1MEd LINE L1 -4879 1240 813 528 283 42 55 chr6 80783658 80783676 -101631566 - L1MA9 LINE L1 -38 6274 6257 231 114 0 0 chr6 80783676 80783711 -101631531 + (TA)n Simple_repeat Simple_repeat 1 35 0 528 283 42 55 chr6 80783711 80784000 -101631242 - L1MA9 LINE L1 -55 6257 5971 183 80 0 0 chr6 80784000 80784025 -101631217 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 6955 140 31 20 chr6 80784028 80784744 -101630498 - L1PA13 LINE L1 -19 6144 5437 2121 117 3 7 chr6 80784744 80785042 -101630200 - AluSg SINE Alu -7 303 7 2168 123 13 0 chr6 80785050 80785350 -101629892 - AluSx SINE Alu -6 306 3 6955 140 31 20 chr6 80785350 80785481 -101629761 - L1PA13 LINE L1 -732 5431 5303 1766 109 113 11 chr6 80785481 80785756 -101629486 - AluSp SINE Alu -10 303 1 6955 140 31 20 chr6 80785756 80786980 -101628262 - L1PA13 LINE L1 -860 5303 4076 2974 151 31 24 chr6 80787404 80787747 -101627495 - L1MB4 LINE L1 -1 6179 5829 2412 77 0 3 chr6 80787747 80788045 -101627197 - AluSg SINE Alu -13 297 1 2974 151 31 24 chr6 80788045 80788289 -101626953 - L1MB4 LINE L1 -351 5829 5588 461 221 38 0 chr6 80788400 80788531 -101626711 - L1MB4 LINE L1 -672 5449 5314 275 267 44 11 chr6 80788785 80788875 -101626367 - L3 LINE CR1 -846 731 639 434 123 54 0 chr6 80789233 80789363 -101625879 + (TA)n Simple_repeat Simple_repeat 2 138 0 234 211 0 24 chr6 80789395 80789518 -101625724 + (TG)n Simple_repeat Simple_repeat 2 121 0 204 40 0 0 chr6 80789575 80789600 -101625642 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 80789724 80789747 -101625495 + AT_rich Low_complexity Low_complexity 1 23 0 552 91 0 0 chr6 80790245 80790333 -101624909 + (CA)n Simple_repeat Simple_repeat 2 89 0 292 346 55 25 chr6 80790832 80791034 -101624208 + L2 LINE L2 210 417 -2897 189 107 0 0 chr6 80792587 80792615 -101622627 + (GA)n Simple_repeat Simple_repeat 2 29 0 409 291 52 23 chr6 80792615 80792787 -101622455 - MLT1L LTR MaLR -285 330 154 1048 280 98 0 chr6 80792820 80793138 -101622104 - MER20B DNA MER1_type -434 349 1 473 342 96 8 chr6 80793422 80793662 -101621580 + MIR SINE MIR 2 262 0 2000 127 38 0 chr6 80794337 80794629 -101620613 - AluSx SINE Alu -9 303 1 40 0 0 0 chr6 80794867 80794907 -101620335 + AT_rich Low_complexity Low_complexity 1 40 0 429 232 232 7 chr6 80795835 80795973 -101619269 + MIR SINE MIR 8 176 -86 734 182 133 0 chr6 80796783 80796940 -101618302 - MER5A DNA MER1_type -5 184 4 429 333 29 23 chr6 80797002 80797176 -101618066 + MER5B DNA MER1_type 3 177 -1 879 166 0 72 chr6 80797288 80797452 -101617790 - L1MA7 LINE L1 -10 6281 6107 2380 57 0 23 chr6 80797452 80797752 -101617490 - AluY SINE Alu -18 293 1 1740 124 98 4 chr6 80797752 80798027 -101617215 - AluSg SINE Alu -9 301 1 879 166 0 72 chr6 80798027 80798084 -101617158 - L1MA7 LINE L1 -182 6109 6075 1969 152 0 3 chr6 80798092 80798388 -101616854 - AluSx SINE Alu -17 295 1 2279 153 113 27 chr6 80798432 80798909 -101616333 - MLT2B1 LTR ERVL -2 518 1 717 97 0 0 chr6 80799111 80799214 -101616028 + (TA)n Simple_repeat Simple_repeat 1 103 0 563 180 0 101 chr6 80799215 80799354 -101615888 - FLAM_A SINE Alu -8 125 1 246 128 0 0 chr6 80799447 80799486 -101615756 + (CA)n Simple_repeat Simple_repeat 2 40 0 27 29 0 0 chr6 80800321 80800355 -101614887 + AT_rich Low_complexity Low_complexity 1 34 0 212 394 78 28 chr6 80801099 80801241 -101614001 - L2 LINE L2 0 3272 3124 663 270 95 18 chr6 80801402 80801624 -101613618 - MIR SINE MIR 0 262 24 198 370 103 7 chr6 80801701 80801847 -101613395 + MIR SINE MIR 41 200 -62 654 178 39 16 chr6 80802122 80802251 -101612991 - MIR SINE MIR -43 219 88 24 0 0 0 chr6 80802919 80802943 -101612299 + AT_rich Low_complexity Low_complexity 1 24 0 414 268 124 13 chr6 80803713 80803866 -101611376 + MIR SINE MIR 23 192 -70 279 286 133 0 chr6 80803866 80803964 -101611278 + MIR SINE MIR 148 258 -4 350 390 59 42 chr6 80804012 80804560 -101610682 + L2 LINE L2 2505 3058 -255 23 54 0 0 chr6 80805806 80805843 -101609399 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 80806319 80806356 -101608886 + AT_rich Low_complexity Low_complexity 1 37 0 2284 119 0 0 chr6 80806709 80807011 -101608231 - AluSx SINE Alu -8 304 3 215 231 31 0 chr6 80807552 80807617 -101607625 + T-rich Low_complexity Low_complexity 4 70 0 184 279 150 41 chr6 80807687 80807834 -101607408 + MIR SINE MIR 59 221 -41 259 286 42 17 chr6 80807862 80807981 -101607261 - L1MC4a LINE L1 -1634 6174 6053 1793 178 123 24 chr6 80807987 80808369 -101606873 - MSTB LTR MaLR 0 426 7 271 269 0 0 chr6 80808373 80808451 -101606791 - L1MC4a LINE L1 -1797 6011 5934 1585 181 8 0 chr6 80808457 80808723 -101606519 - AluJb SINE Alu -13 299 32 2416 221 64 25 chr6 80808756 80809409 -101605833 - L1MC4a LINE L1 -1864 5944 5266 745 283 17 21 chr6 80809749 80809989 -101605253 + MIR SINE MIR 19 257 -5 327 49 0 0 chr6 80810848 80810889 -101604353 + (TG)n Simple_repeat Simple_repeat 2 42 0 207 0 0 0 chr6 80810904 80810927 -101604315 + (T)n Simple_repeat Simple_repeat 1 23 0 2233 105 0 16 chr6 80811294 80811598 -101603644 - AluSq SINE Alu -14 299 1 207 0 0 0 chr6 80812288 80812311 -101602931 + (TG)n Simple_repeat Simple_repeat 2 24 0 551 250 140 40 chr6 80812454 80812826 -101602416 - MLT1I LTR MaLR 0 409 1 485 191 21 0 chr6 80812967 80813061 -101602181 - MER58C DNA MER1_type 0 215 120 216 273 0 18 chr6 80813061 80813116 -101602126 + CT-rich Low_complexity Low_complexity 3 56 0 3700 45 2 0 chr6 80813437 80813864 -101601378 - LTR5 LTR ERVK -541 428 1 4601 24 0 0 chr6 80813864 80814397 -101600845 + L1PA5 LINE L1 5622 6154 0 25 0 0 0 chr6 80814397 80814422 -101600820 + AT_rich Low_complexity Low_complexity 1 25 0 239 222 37 0 chr6 80814422 80814476 -101600766 + L3 LINE CR1 1518 1573 -4 185 342 40 0 chr6 80815802 80815878 -101599364 + L2 LINE L2 3232 3310 -3 378 208 387 0 chr6 80816412 80816580 -101598662 + MIR SINE MIR 17 249 -13 360 0 0 0 chr6 80816678 80816718 -101598524 + (TG)n Simple_repeat Simple_repeat 2 41 0 742 160 155 52 chr6 80817422 80817635 -101597607 + MER46A DNA MER2_type 2 236 0 224 313 0 21 chr6 80817653 80817749 -101597493 + (TA)n Simple_repeat Simple_repeat 2 95 0 205 74 74 25 chr6 80818081 80818162 -101597080 + (TA)n Simple_repeat Simple_repeat 1 85 0 515 267 134 8 chr6 80818422 80818684 -101596558 + L1M4 LINE L1 4178 4472 -1674 789 257 60 5 chr6 80819290 80819499 -101595743 - MIR SINE MIR -38 224 4 21 71 0 0 chr6 80820157 80820199 -101595043 + AT_rich Low_complexity Low_complexity 1 42 0 182 359 63 35 chr6 80821839 80821981 -101593261 + L3 LINE CR1 1090 1235 -342 210 191 0 0 chr6 80822032 80822074 -101593168 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr6 80822649 80822678 -101592564 + AT_rich Low_complexity Low_complexity 1 29 0 409 273 50 8 chr6 80824217 80824338 -101590904 - MIR SINE MIR 0 262 137 547 125 0 0 chr6 80824338 80824418 -101590824 - AluJ/FLAM SINE Alu -228 84 5 460 261 21 63 chr6 80824446 80824588 -101590654 - L2 LINE L2 0 3272 3137 21 0 0 0 chr6 80825560 80825581 -101589661 + AT_rich Low_complexity Low_complexity 1 21 0 1577 184 0 11 chr6 80826740 80827007 -101588235 - AluJo SINE Alu -48 264 1 440 277 99 35 chr6 80827857 80828059 -101587183 - LTR16A1 LTR ERVL -217 240 26 417 342 13 7 chr6 80828083 80828238 -101587004 + MIR SINE MIR 100 255 -7 2987 51 8 0 chr6 80828817 80829189 -101586053 + L1PA5 LINE L1 5775 6149 -5 3481 146 4 2 chr6 80829200 80829750 -101585492 + L1PA16 LINE L1 5599 6149 -17 549 229 34 0 chr6 80830005 80830123 -101585119 + MSTB LTR MaLR 58 179 -247 309 344 65 54 chr6 80830606 80830792 -101584450 + MIR SINE MIR 1 188 -74 2160 120 7 3 chr6 80830819 80831127 -101584115 - AluSx SINE Alu -3 309 1 231 364 21 42 chr6 80831241 80831384 -101583858 + L2 LINE L2 2958 3097 -175 451 312 70 0 chr6 80831415 80831572 -101583670 - MER5A DNA MER1_type -14 175 8 1836 202 72 10 chr6 80831734 80832135 -101583107 - MSTB LTR MaLR 0 426 1 21 71 0 0 chr6 80833179 80833221 -101582021 + AT_rich Low_complexity Low_complexity 1 42 0 183 42 0 0 chr6 80834435 80834459 -101580783 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 185 208 0 19 chr6 80835146 80835199 -101580043 + CT-rich Low_complexity Low_complexity 4 55 0 21 0 0 0 chr6 80839870 80839891 -101575351 + AT_rich Low_complexity Low_complexity 1 21 0 309 272 130 13 chr6 80840406 80840579 -101574663 - L1ME LINE L1 -696 5470 5277 1462 148 53 30 chr6 80841121 80841424 -101573818 - L1MB3 LINE L1 -2 6181 5872 244 223 98 54 chr6 80841442 80841554 -101573688 - MER20B DNA MER1_type -606 177 61 345 295 108 63 chr6 80842870 80843185 -101572057 + L2 LINE L2 2984 3312 -1 2107 103 0 7 chr6 80843273 80843546 -101571696 + AluSx SINE Alu 27 297 -15 1493 87 5 0 chr6 80843902 80844110 -101571132 + L1PA4 LINE L1 5944 6152 -3 1807 161 17 0 chr6 80844797 80845089 -101570153 + AluJb SINE Alu 1 297 -15 21 36 0 0 chr6 80845148 80845176 -101570066 + AT_rich Low_complexity Low_complexity 1 28 0 2088 69 10 46 chr6 80845379 80845682 -101569560 + AluY SINE Alu 1 292 -19 241 296 49 37 chr6 80845720 80845801 -101569441 + MIR3 SINE MIR 3 75 -133 549 0 0 0 chr6 80846267 80846328 -101568914 + (TC)n Simple_repeat Simple_repeat 2 62 0 282 95 0 0 chr6 80846327 80846369 -101568873 + (TG)n Simple_repeat Simple_repeat 1 42 0 * 289 294 117 42 chr6 80847523 80848424 -101566818 - L1M4 LINE L1 -2666 3480 2513 5410 165 24 5 chr6 80848582 80850123 -101565119 - L1MA6 LINE L1 -4 7715 6147 1711 186 131 8 chr6 80850128 80850509 -101564733 + MSTA LTR MaLR 1 428 0 8705 136 18 51 chr6 80850537 80852152 -101563090 + MSTA-int LTR MaLR 19 1580 0 1805 158 152 8 chr6 80852152 80852526 -101562716 + MSTA LTR MaLR 1 428 0 4392 154 14 9 chr6 80852526 80853383 -101561859 - L1MA6 LINE L1 -1419 6146 5286 3068 200 23 19 chr6 80853385 80853676 -101561566 - L1MA6 LINE L1 -3240 4325 4037 2018 117 0 60 chr6 80853676 80853976 -101561266 + AluSq SINE Alu 1 283 -30 432 0 0 0 chr6 80853976 80854024 -101561218 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 2018 117 0 60 chr6 80854024 80854039 -101561203 + AluSq SINE Alu 283 297 -16 3068 200 23 19 chr6 80854039 80854724 -101560518 - L1MA6 LINE L1 -3528 4037 3350 365 299 78 5 chr6 80854737 80854941 -101560301 - HAL1 LINE L1 -845 1662 1444 22 0 0 0 chr6 80855885 80855907 -101559335 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 80856077 80856105 -101559137 + AT_rich Low_complexity Low_complexity 1 28 0 1041 216 29 0 chr6 80857790 80857998 -101557244 + MER20 DNA MER1_type 5 218 -1 399 329 48 24 chr6 80858209 80858376 -101556866 - MER5A DNA MER1_type -2 187 17 783 237 136 63 chr6 80858617 80859043 -101556199 + MLT1J LTR MaLR 1 457 -54 1975 221 124 19 chr6 80859049 80859583 -101555659 + MLT1E LTR MaLR 2 591 -2 186 103 0 0 chr6 80860064 80860093 -101555149 + (TC)n Simple_repeat Simple_repeat 2 30 0 258 276 0 13 chr6 80860175 80860251 -101554991 + MIR SINE MIR 6 80 -182 194 262 0 0 chr6 80860707 80860749 -101554493 + MIR SINE MIR 217 258 -4 330 316 364 2 chr6 80861534 80861990 -101553252 + L3 LINE CR1 849 1469 -108 2393 151 25 32 chr6 80862102 80862572 -101552670 + MLT1C LTR MaLR 1 467 0 220 184 0 0 chr6 80862585 80862623 -101552619 - MIR SINE MIR -83 125 88 562 49 24 0 chr6 80863257 80863339 -101551903 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 210 346 77 13 chr6 80863656 80863734 -101551508 + L2 LINE L2 3168 3250 -22 202 318 0 0 chr6 80863962 80864028 -101551214 + GA-rich Low_complexity Low_complexity 1 66 0 21 0 0 0 chr6 80864224 80864245 -101550997 + AT_rich Low_complexity Low_complexity 1 21 0 40473 36 23 2 chr6 80864245 80870259 -101544983 - L1PA2 LINE L1 0 6155 13 315 323 107 27 chr6 80870463 80870763 -101544479 + L2 LINE L2 1698 2021 -1293 6311 101 13 1 chr6 80870775 80871750 -101543492 - L1MA2 LINE L1 0 7723 6737 2304 136 34 9 chr6 80871756 80872288 -101542954 - L1MA2 LINE L1 -876 6689 6016 2248 151 21 9 chr6 80872284 80872714 -101542528 - L1MA2 LINE L1 -1823 5742 5308 * 2436 92 26 6 chr6 80872715 80873063 -101542179 + THE1A LTR MaLR 1 355 0 9024 113 41 22 chr6 80873064 80874753 -101540489 + THE1A-int LTR MaLR 2 1651 0 2461 80 56 3 chr6 80874753 80875090 -101540152 + THE1A LTR MaLR 1 355 0 7081 182 18 22 chr6 80875090 80876122 -101539120 - L1MA2 LINE L1 -2254 5311 4277 7405 37 5 0 chr6 80876122 80877301 -101537941 + L1PA3 LINE L1 4973 6155 0 7081 182 18 22 chr6 80877301 80879176 -101536066 - L1MA2 LINE L1 -3288 4277 2418 942 137 11 11 chr6 80879192 80879367 -101535875 - LTR7 LTR ERV1 -38 412 238 7134 59 11 13 chr6 80879430 80881010 -101534232 - SVA Other Other -760 1381 1 7717 153 37 5 chr6 80881018 80882299 -101532943 - L1MA2 LINE L1 -5139 2426 1105 579 167 42 17 chr6 80882303 80882423 -101532819 - L1MA2 LINE L1 -7431 134 12 237 317 0 0 chr6 80882519 80882601 -101532641 - L2 LINE L2 -772 2542 2461 959 255 76 56 chr6 80882995 80883548 -101531694 - L1MD2 LINE L1 -4 6355 5792 308 261 78 43 chr6 80885929 80886044 -101529198 - MIR SINE MIR -68 140 22 201 39 0 0 chr6 80886348 80886374 -101528868 + (TG)n Simple_repeat Simple_repeat 2 27 0 568 304 117 9 chr6 80886778 80887008 -101528234 - MIR SINE MIR -6 256 2 535 289 98 21 chr6 80887257 80887492 -101527750 - MIR SINE MIR -2 260 8 4607 183 37 33 chr6 80888959 80890538 -101524704 - L1MB3 LINE L1 -4 6179 4603 1889 160 3 0 chr6 80890538 80890820 -101524422 - AluJo SINE Alu -19 293 11 4607 183 37 33 chr6 80890820 80890835 -101524407 - L1MB3 LINE L1 -1580 4603 4590 246 153 0 0 chr6 80891010 80891069 -101524173 + (CA)n Simple_repeat Simple_repeat 2 60 0 2160 40 0 135 chr6 80891869 80892217 -101523025 + AluY SINE Alu 1 301 0 409 76 114 13 chr6 80892657 80892736 -101522506 + L1PA11 LINE L1 6087 6173 -1 194 430 59 7 chr6 80894927 80895062 -101520180 - L2 LINE L2 -35 3237 3096 2365 171 18 11 chr6 80895403 80895841 -101519401 + MSTB2 LTR MaLR 17 457 0 22 35 0 0 chr6 80895925 80895954 -101519288 + AT_rich Low_complexity Low_complexity 1 29 0 184 292 90 11 chr6 80896308 80896397 -101518845 - L2 LINE L2 -525 2789 2694 227 175 25 0 chr6 80896532 80896572 -101518670 + CT-rich Low_complexity Low_complexity 2 42 0 892 172 4 82 chr6 80896613 80896845 -101518397 + MER20 DNA MER1_type 6 219 0 593 211 102 22 chr6 80897423 80898628 -101516614 - L1MC4 LINE L1 -1 8041 6690 1275 179 54 4 chr6 80898652 80898932 -101516310 - L1MB2 LINE L1 -4 6167 5874 406 248 128 7 chr6 80899987 80900128 -101515114 - L3 LINE CR1 -187 1390 1233 315 148 0 13 chr6 80900528 80900601 -101514641 + Alu SINE Alu 239 294 -8 2155 71 0 4 chr6 80900766 80901033 -101514209 + AluY SINE Alu 1 266 -45 338 323 40 0 chr6 80901263 80901387 -101513855 - MER20B DNA MER1_type -611 172 44 632 274 44 10 chr6 80901457 80901882 -101513360 + MLT1L LTR MaLR 148 611 -4 22 35 0 0 chr6 80902250 80902279 -101512963 + AT_rich Low_complexity Low_complexity 1 29 0 181 214 34 120 chr6 80902487 80902604 -101512638 - MIR3 SINE MIR -96 112 6 636 248 110 40 chr6 80903569 80903932 -101511310 + MER57B LTR ERV1 19 408 -26 1375 181 16 62 chr6 80903932 80904236 -101511006 + AluJo SINE Alu 3 292 -20 636 248 110 40 chr6 80904236 80904258 -101510984 + MER57B LTR ERV1 408 427 -7 252 255 85 50 chr6 80904692 80904833 -101510409 - L1ME4a LINE L1 -24 6097 5952 367 303 78 42 chr6 80905301 80905585 -101509657 + MLT1L LTR MaLR 214 611 -4 376 233 142 17 chr6 80906743 80906863 -101508379 + MLT1C LTR MaLR 1 135 -519 11669 208 33 21 chr6 80906885 80909584 -101505658 + L1M2 LINE L1 2 2734 -4115 2106 201 30 27 chr6 80909584 80910186 -101505056 + pTR5 LTR ERV1 743 1346 -1092 3781 110 216 25 chr6 80910200 80910890 -101504352 + LTR12 LTR ERV1 5 826 0 19357 90 6 8 chr6 80910890 80915541 -101499701 + HERV9 LTR ERV1 17 4684 -3715 6250 124 10 9 chr6 80915540 80917019 -101498223 + HERV9 LTR ERV1 504 8395 -4 * 4719 111 86 48 chr6 80917025 80917817 -101497425 + LTR12 LTR ERV1 5 826 0 6640 207 41 21 chr6 80917817 80918152 -101497090 + L1M2 LINE L1 2731 3058 -3790 2322 140 98 24 chr6 80918152 80918610 -101496632 - LTR22B LTR ERVK 0 492 1 6640 207 41 21 chr6 80918610 80920214 -101495028 + L1M2 LINE L1 3058 4712 -2136 715 253 27 35 chr6 80920214 80920443 -101494799 + MLT1C LTR MaLR 192 314 -51 31 0 0 0 chr6 80920876 80920907 -101494335 + AT_rich Low_complexity Low_complexity 1 31 0 7215 54 39 5 chr6 80920907 80921826 -101493416 - SVA Other Other -7 1379 430 2193 137 0 0 chr6 80922062 80922368 -101492874 - AluSq SINE Alu -7 306 1 231 146 0 0 chr6 80922381 80922422 -101492820 + (TCC)n Simple_repeat Simple_repeat 2 42 0 1613 164 15 29 chr6 80922430 80922771 -101492471 - L1 LINE L1 -1112 5034 4699 6673 72 3 0 chr6 80922771 80923900 -101491342 - L1PA7 LINE L1 0 6154 5011 41658 44 1 2 chr6 80924114 80930270 -101484972 + L1PA3 LINE L1 2 6152 -3 29 0 0 0 chr6 80930270 80930299 -101484943 + AT_rich Low_complexity Low_complexity 1 29 0 263 319 55 11 chr6 80930299 80930390 -101484852 - MIR3 SINE MIR -109 99 5 27 49 0 0 chr6 80930400 80930441 -101484801 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr6 80930457 80930486 -101484756 + AT_rich Low_complexity Low_complexity 1 29 0 191 200 17 67 chr6 80931341 80931401 -101483841 - MIR3 SINE MIR -48 160 104 1813 143 3 21 chr6 80931588 80931874 -101483368 - AluSx SINE Alu -31 281 1 5296 71 17 13 chr6 80931892 80932592 -101482650 - SVA Other Other 0 1386 684 2262 95 0 55 chr6 80932707 80933034 -101482208 - AluSc SINE Alu 0 309 1 537 219 38 12 chr6 80933118 80933278 -101481964 - LTR33A LTR ERVL -1 522 359 4024 243 10 8 chr6 80933432 80934917 -101480325 + L1PA15-16 LINE L1 1676 3165 -3684 3856 179 68 81 chr6 80934920 80935908 -101479334 - L1M2a LINE L1 -6190 978 4 480 311 109 8 chr6 80936084 80936322 -101478920 + MIR SINE MIR 1 262 0 23 54 0 0 chr6 80936721 80936758 -101478484 + AT_rich Low_complexity Low_complexity 1 37 0 592 208 0 13 chr6 80936888 80937047 -101478195 - L1 LINE L1 -825 5321 5165 1188 111 70 0 chr6 80937248 80937420 -101477822 - AluSg/x SINE Alu -16 296 113 249 241 0 17 chr6 80937874 80937932 -101477310 + GA-rich Low_complexity Low_complexity 4 60 0 251 217 109 0 chr6 80938280 80938372 -101476870 - MLT1L LTR MaLR -43 572 471 340 211 143 68 chr6 80938443 80938590 -101476652 - MLT1L LTR MaLR -267 348 191 488 301 119 52 chr6 80938897 80939402 -101475840 + L1M4 LINE L1 2499 3037 -3109 22 0 0 0 chr6 80939454 80939476 -101475766 + AT_rich Low_complexity Low_complexity 1 22 0 2314 69 38 0 chr6 80939476 80939765 -101475477 + AluSc SINE Alu 1 300 -9 412 331 94 29 chr6 80940060 80940168 -101475074 + L1MC/D LINE L1 5291 5391 -2417 2382 68 0 0 chr6 80940168 80940461 -101474781 + AluY SINE Alu 5 297 -14 412 331 94 29 chr6 80940461 80940693 -101474549 + L1MC/D LINE L1 5391 5653 -2155 306 236 0 0 chr6 80940748 80940803 -101474439 - L1MD3 LINE L1 -1273 6722 6668 2924 42 3 0 chr6 80940913 80941271 -101473971 - L1PA4 LINE L1 -4 6151 5793 635 295 110 9 chr6 80941674 80942020 -101473222 + HsTC2 DNA Tc2 511 891 -1007 627 247 112 52 chr6 80942141 80942408 -101472834 - MLT1J LTR MaLR 0 511 229 865 298 49 42 chr6 80942531 80942961 -101472281 - LTR16A LTR ERVL 0 450 18 1384 257 45 11 chr6 80943571 80943949 -101471293 - L1MC4 LINE L1 -409 7633 7243 1614 212 53 32 chr6 80943958 80944433 -101470809 - L1MC4 LINE L1 -809 6999 6500 2534 128 10 13 chr6 80944858 80945248 -101469994 + MLT1B LTR MaLR 2 390 0 680 312 131 36 chr6 80945255 80945812 -101469430 - L1M4 LINE L1 -1121 5727 5118 337 312 21 0 chr6 80946059 80946152 -101469090 - MIR SINE MIR -149 113 19 319 290 45 95 chr6 80947507 80947707 -101467535 + MIR3 SINE MIR 8 197 -11 1982 328 53 47 chr6 80947713 80948927 -101466315 - ERVL LTR ERVL -3768 1996 776 501 17 0 0 chr6 80949542 80949600 -101465642 + (CA)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr6 80950298 80950319 -101464923 + AT_rich Low_complexity Low_complexity 1 21 0 1934 145 23 11 chr6 80950319 80950671 -101464571 - L1MA4A LINE L1 -11 6292 5937 4925 159 15 9 chr6 80950673 80951677 -101463565 - L1MA4A LINE L1 -202 6101 5082 4559 185 36 14 chr6 80951729 80952885 -101462357 - L1M4 LINE L1 -3741 3107 1928 12927 63 15 2 chr6 81052892 81054601 -101360641 + L1P LINE L1 3107 4836 -1310 300 190 95 43 chr6 81054668 81054784 -101360458 + HsTC2 DNA Tc2 1776 1897 -1 270 350 19 0 chr6 81054790 81054893 -101360349 + MIR3 SINE MIR 98 202 -6 267 309 87 34 chr6 81056032 81056181 -101359061 + MIR SINE MIR 36 192 -70 23 54 0 0 chr6 81056629 81056666 -101358576 + AT_rich Low_complexity Low_complexity 1 37 0 182 459 30 8 chr6 81056679 81056812 -101358430 - L2 LINE L2 -33 3239 3104 1803 117 0 4 chr6 81057701 81057958 -101357284 + AluY SINE Alu 1 256 -55 1346 227 100 7 chr6 81058058 81058499 -101356743 + L1M4 LINE L1 4799 5280 -866 13168 148 17 20 chr6 81058511 81060811 -101354431 + L1P LINE L1 11 2303 -3843 195 245 0 0 chr6 81061365 81061418 -101353824 + MIR SINE MIR 90 142 -120 304 228 18 70 chr6 81061833 81061947 -101353295 + LTR33A LTR ERVL 416 523 0 6047 159 57 17 chr6 81062474 81064240 -101351002 - L1MA5A LINE L1 -21 6276 4401 195 42 0 0 chr6 81064240 81064264 -101350978 + (TG)n Simple_repeat Simple_repeat 1 24 0 6047 159 57 17 chr6 81064264 81064691 -101350551 - L1MA5A LINE L1 -1896 4401 3993 1351 190 56 0 chr6 81064682 81065019 -101350223 - L1MA5A LINE L1 -2994 3152 2797 * 2373 55 0 0 chr6 81065850 81066123 -101349119 + AluY SINE Alu 25 297 -14 502 329 120 15 chr6 81066217 81066551 -101348691 + MLT1I LTR MaLR 41 409 0 856 201 53 91 chr6 81066621 81066939 -101348303 + MER110A LTR ERV1 1 306 -162 317 305 84 52 chr6 81067135 81067348 -101347894 + HAL1 LINE L1 421 640 -1867 1304 274 85 30 chr6 81067443 81068134 -101347108 + HAL1 LINE L1 808 1536 -971 373 247 99 25 chr6 81068155 81068317 -101346925 - L1MC5 LINE L1 -44 7917 7744 2973 100 5 0 chr6 81068497 81068906 -101346336 + L1PA10 LINE L1 5755 6165 -3 2076 114 28 3 chr6 81069155 81069444 -101345798 - AluSx SINE Alu -12 300 5 390 272 0 11 chr6 81070449 81070541 -101344701 + MER5B DNA MER1_type 88 178 0 2535 162 40 11 chr6 81070806 81071310 -101343932 - LTR27 LTR ERV1 -11 490 3 252 340 10 20 chr6 81071466 81071566 -101343676 - ERVL LTR ERVL -4329 1435 1337 2557 175 194 84 chr6 81071653 81072486 -101342756 + LTR28 LTR ERV1 1 925 -95 421 270 18 9 chr6 81072486 81072597 -101342645 + LTR28 LTR ERV1 839 950 -70 960 217 37 38 chr6 81072769 81073075 -101342167 - L1MC5 LINE L1 -1030 7012 6650 821 301 69 31 chr6 81073870 81074259 -101340983 + HAL1 LINE L1 1550 1953 -554 838 206 63 32 chr6 81074354 81074607 -101340635 + HAL1 LINE L1 2242 2502 -5 181 351 52 30 chr6 81074900 81075034 -101340208 + L2 LINE L2 3176 3312 -1 1619 128 27 6 chr6 81076179 81076518 -101338724 + L1P4 LINE L1 5110 5452 -722 222 37 0 0 chr6 81077546 81077573 -101337669 + (ATG)n Simple_repeat Simple_repeat 2 28 0 952 190 6 0 chr6 81081330 81081509 -101333733 + MER2 DNA MER2_type 43 222 -123 24 67 0 0 chr6 81082111 81082156 -101333086 + AT_rich Low_complexity Low_complexity 1 45 0 220 230 162 40 chr6 81082539 81082613 -101332629 + L2 LINE L2 3190 3272 0 2454 90 0 3 chr6 81083307 81083619 -101331623 - AluSp SINE Alu -2 311 1 3131 154 8 0 chr6 81083935 81084460 -101330782 - L1PA13 LINE L1 0 6163 5635 226 121 0 0 chr6 81084597 81084630 -101330612 - MLT1L LTR MaLR -389 226 194 240 333 0 21 chr6 81084814 81084910 -101330332 - MER117 DNA MER1_type -45 152 59 22 0 0 0 chr6 81085219 81085241 -101330001 + AT_rich Low_complexity Low_complexity 1 22 0 472 212 77 47 chr6 81085425 81085603 -101329639 + L1M4 LINE L1 1472 1748 -4896 517 131 10 10 chr6 81085608 81085707 -101329535 + A-rich Low_complexity Low_complexity 2 100 0 8888 63 1 2 chr6 81085708 81086890 -101328352 - L1P LINE L1 -2449 3697 2517 12375 49 7 1 chr6 81087126 81089451 -101325791 - L1PA6 LINE L1 -3 6151 3816 6861 30 11 4 chr6 81089451 81090281 -101324961 + L1PA4 LINE L1 5313 6152 -3 1167 151 0 0 chr6 81090281 81090453 -101324789 + AluJb SINE Alu 134 305 -7 533 274 23 29 chr6 81090474 81090649 -101324593 - MIR SINE MIR -77 185 12 2174 198 87 17 chr6 81091703 81092184 -101323058 + MLT2B2 LTR ERVL 1 515 0 267 222 63 40 chr6 81092436 81092562 -101322680 - L1ME4a LINE L1 -3 6118 5990 250 324 129 30 chr6 81092690 81093156 -101322086 - L1MC4 LINE L1 -325 7717 7206 431 275 54 49 chr6 81093202 81093627 -101321615 - L1MC4 LINE L1 -828 7133 6717 2658 22 0 3 chr6 81094335 81094649 -101320593 - L1HS LINE L1 -3 6152 5840 1677 28 5 5 chr6 81094644 81094862 -101320380 + L1P LINE L1 5144 5361 -785 * 1359 222 30 10 chr6 81094862 81095184 -101320058 - MER31A LTR ERV1 -139 327 1 24 0 0 0 chr6 81095213 81095237 -101320005 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr6 81095524 81095566 -101319676 + AT_rich Low_complexity Low_complexity 1 42 0 207 69 0 0 chr6 81096645 81096674 -101318568 + (TTA)n Simple_repeat Simple_repeat 2 30 0 7849 15 0 0 chr6 81096676 81097801 -101317441 - L1HS LINE L1 -4 6151 5027 2043 268 57 59 chr6 81098181 81099851 -101315391 + L1ME LINE L1 6 1722 -4539 1539 203 160 21 chr6 81099881 81100413 -101314829 + L1ME LINE L1 2579 3184 -2896 261 83 0 0 chr6 81100458 81100494 -101314748 + (CA)n Simple_repeat Simple_repeat 1 36 0 3709 182 44 9 chr6 81100525 81101994 -101313248 + L1PB4 LINE L1 4461 5977 -179 2628 333 22 4 chr6 81101425 81102166 -101313076 + L1PA12 LINE L1 5408 6161 -7 * 441 0 0 0 chr6 81102166 81102215 -101313027 + (TA)n Simple_repeat Simple_repeat 1 49 0 1680 118 15 8 chr6 81102215 81102477 -101312765 + L1PB1 LINE L1 5878 6141 -10 776 247 45 21 chr6 81102603 81103131 -101312111 + L1ME LINE L1 4744 5392 -704 539 324 60 23 chr6 81103136 81103435 -101311807 + MLT1I LTR MaLR 77 386 -23 1979 129 10 13 chr6 81103616 81103918 -101311324 - AluSx SINE Alu -11 301 1 201 219 31 0 chr6 81104672 81104736 -101310506 + (TA)n Simple_repeat Simple_repeat 1 66 0 267 330 11 0 chr6 81106143 81106234 -101309008 + CT-rich Low_complexity Low_complexity 1 92 0 849 246 84 37 chr6 81107900 81108282 -101306960 + L1MC4 LINE L1 7642 8041 -1 734 324 55 4 chr6 81108293 81108568 -101306674 - LTR33 LTR ERVL -46 475 187 808 336 127 14 chr6 81108590 81109007 -101306235 - LTR16B LTR ERVL 0 464 1 253 276 45 60 chr6 81109007 81109133 -101306109 - LTR33 LTR ERVL -374 147 24 250 217 0 67 chr6 81111255 81111315 -101303927 + L2 LINE L2 3217 3272 0 201 100 0 0 chr6 81111413 81111443 -101303799 + L2 LINE L2 3243 3272 0 214 428 61 15 chr6 81111830 81111961 -101303281 - L2 LINE L2 -17 3255 3119 329 307 0 0 chr6 81112067 81112142 -101303100 + L2 LINE L2 3198 3272 0 407 178 0 22 chr6 81112546 81112636 -101302606 - FLAM_C SINE Alu -5 138 51 419 100 14 0 chr6 81112650 81112720 -101302522 + (TG)n Simple_repeat Simple_repeat 2 72 0 224 88 25 62 chr6 81112720 81112800 -101302442 + (TA)n Simple_repeat Simple_repeat 1 77 0 2561 56 3 0 chr6 81113382 81113688 -101301554 - AluSp SINE Alu -6 307 1 21 36 0 0 chr6 81114409 81114437 -101300805 + AT_rich Low_complexity Low_complexity 1 28 0 313 296 85 40 chr6 81114628 81114771 -101300471 - L2 LINE L2 0 3313 3155 14648 127 33 10 chr6 81114771 81117135 -101298107 + Tigger1 DNA MER2_type 2 2418 0 313 296 85 40 chr6 81117135 81117214 -101298028 - L2 LINE L2 -158 3155 3081 1198 296 41 50 chr6 81117235 81117817 -101297425 - L2 LINE L2 -799 2515 1939 381 176 15 0 chr6 81118438 81118506 -101296736 - MER58 DNA MER1_type -14 2406 2338 547 165 73 0 chr6 81118542 81118651 -101296591 - MER53 DNA DNA -67 122 6 368 236 57 38 chr6 81118659 81118765 -101296477 - MER58 DNA MER1_type -107 108 1 318 296 108 11 chr6 81118771 81118947 -101296295 - LTR67 LTR ERVL 0 557 365 239 286 112 0 chr6 81119126 81119224 -101296018 - LTR67 LTR ERVL -350 207 99 276 328 90 23 chr6 81119898 81120154 -101295088 + L2 LINE L2 1552 1824 -1490 839 111 0 8 chr6 81120256 81120382 -101294860 + MLT2A1 LTR ERVL 320 444 0 443 332 85 18 chr6 81120401 81120684 -101294558 - L2 LINE L2 -1794 1520 1219 310 398 37 24 chr6 81121087 81121381 -101293861 - L2 LINE L2 -2922 392 95 314 218 13 26 chr6 81121455 81121533 -101293709 - LTR33A LTR ERVL -3 520 444 2394 202 12 4 chr6 81121686 81122197 -101293045 - L1P LINE L1 -1201 4945 4431 4822 141 40 17 chr6 81122202 81123197 -101292045 + L1PA16 LINE L1 5151 6166 0 2072 141 0 3 chr6 81123375 81123674 -101291568 + AluSg SINE Alu 1 298 -12 1008 284 28 46 chr6 81123857 81124232 -101291010 - L1M3de LINE L1 -5710 943 2 17161 29 6 0 chr6 81125127 81127420 -101287822 - L1P1 LINE L1 -532 5623 3317 456 341 41 68 chr6 81129280 81129780 -101285462 - L2 LINE L2 -4 3268 2787 12871 226 48 24 chr6 81130293 81133796 -101281446 - L1PA12 LINE L1 -1539 6045 2461 6431 254 50 10 chr6 81133849 81135433 -101279809 - L1PA12 LINE L1 -5925 1656 10 41 0 0 0 chr6 81135440 81135481 -101279761 + AT_rich Low_complexity Low_complexity 1 41 0 467 295 18 0 chr6 81136621 81136733 -101278509 - MER81 DNA DNA 0 114 1 673 228 7 54 chr6 81136830 81136979 -101278263 + Tigger3(Golem) DNA MER2_type 1 142 -2887 1404 162 17 0 chr6 81136985 81137220 -101278022 + Tigger3(Golem) DNA MER2_type 2800 3038 0 183 269 58 0 chr6 81137236 81137288 -101277954 + L2 LINE L2 2224 2278 -1036 370 318 74 15 chr6 81137295 81137504 -101277738 + MIR SINE MIR 13 228 -34 740 250 64 6 chr6 81137945 81138117 -101277125 - MER5A DNA MER1_type -6 183 2 28 0 0 0 chr6 81139635 81139663 -101275579 + AT_rich Low_complexity Low_complexity 1 28 0 558 181 39 16 chr6 81139853 81139980 -101275262 - L1MA5 LINE L1 -5 6881 6752 13863 168 51 19 chr6 81139996 81142452 -101272790 - L1MA5 LINE L1 -199 6687 4061 2406 61 0 7 chr6 81142452 81142748 -101272494 - AluY SINE Alu -17 294 1 13863 168 51 19 chr6 81142748 81144087 -101271155 - L1MA5 LINE L1 -2825 4061 2767 356 261 0 11 chr6 81144087 81144175 -101271067 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 406 95 95 0 chr6 81144180 81144328 -101270914 + (TA)n Simple_repeat Simple_repeat 1 162 0 1884 170 0 7 chr6 81144328 81144634 -101270608 - AluJo SINE Alu -8 304 1 6207 278 48 41 chr6 81144635 81145779 -101269463 - L1MA5 LINE L1 -3953 2779 1645 207 0 0 0 chr6 81145779 81145802 -101269440 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6207 278 48 41 chr6 81145802 81147827 -101267415 - L1MA5 LINE L1 -5087 1645 2 5768 20 0 0 chr6 81148719 81149635 -101265607 - L1PA2 LINE L1 -532 5623 4708 4658 11 0 2 chr6 81149635 81150162 -101265080 + L1PA2 LINE L1 5623 6153 -2 443 364 58 46 chr6 81150422 81150749 -101264493 + L2 LINE L2 2940 3270 -2 502 265 58 96 chr6 81150842 81151133 -101264109 - MLT1J1 LTR MaLR -61 385 106 288 0 0 0 chr6 81151428 81151460 -101263782 + (TG)n Simple_repeat Simple_repeat 1 32 0 276 100 0 0 chr6 81151460 81151500 -101263742 + (GA)n Simple_repeat Simple_repeat 2 41 0 226 353 73 7 chr6 81151500 81151636 -101263606 - L2 LINE L2 0 3313 3169 1538 198 6 45 chr6 81152029 81152342 -101262900 - AluJo SINE Alu -9 303 3 2785 250 70 6 chr6 81153636 81154583 -101260659 - L1ME1 LINE L1 -8 6158 5148 1252 231 174 31 chr6 81154590 81155193 -101260049 - L1ME1 LINE L1 -1732 4414 3726 861 108 0 8 chr6 81155193 81155313 -101259929 + AluSq SINE Alu 78 196 -117 1877 122 3 101 chr6 81156057 81156385 -101258857 - AluSq SINE Alu -17 296 1 1196 169 87 0 chr6 81156727 81156981 -101258261 + MER31A LTR ERV1 210 485 0 487 212 10 0 chr6 81156983 81157082 -101258160 - Charlie8 DNA MER1_type -2209 208 109 1343 117 0 0 chr6 81157093 81157281 -101257961 - AluSp SINE Alu -5 308 121 268 330 80 0 chr6 81157294 81157394 -101257848 - Charlie8 DNA MER1_type -2309 108 1 399 254 279 25 chr6 81157434 81157635 -101257607 + MIR SINE MIR 11 262 0 2155 121 39 36 chr6 81158617 81158980 -101256262 + THE1B LTR MaLR 1 364 0 562 113 0 0 chr6 81158980 81159060 -101256182 + THE1B-int LTR MaLR 1 80 -1500 3260 142 43 25 chr6 81159160 81159717 -101255525 + MER4E LTR ERV1 85 651 -128 2438 73 0 0 chr6 81159718 81160018 -101255224 + AluY SINE Alu 1 300 -11 279 297 0 10 chr6 81160348 81160449 -101254793 - L1ME LINE L1 -297 5873 5774 631 162 51 17 chr6 81160970 81161087 -101254155 - MER5B DNA MER1_type -19 159 39 2115 128 0 0 chr6 81161088 81161378 -101253864 + AluSx SINE Alu 1 290 -22 236 200 0 36 chr6 81161401 81161456 -101253786 - MER5B DNA MER1_type -125 53 1 849 274 131 52 chr6 81162044 81162501 -101252741 - MLT1J LTR MaLR -6 505 13 341 336 28 0 chr6 81162503 81162610 -101252632 - L2 LINE L2 -969 2345 2236 454 265 54 14 chr6 81162657 81162804 -101252438 + MLT1J LTR MaLR 5 157 -354 486 0 0 0 chr6 81162816 81162870 -101252372 + (TA)n Simple_repeat Simple_repeat 1 54 0 581 132 0 0 chr6 81162871 81162962 -101252280 - AluJb SINE Alu -17 295 205 930 259 33 19 chr6 81163063 81163426 -101251816 - L1M4 LINE L1 -2431 3715 3348 2013 112 7 46 chr6 81163431 81163735 -101251507 - AluSx SINE Alu -20 292 1 4337 191 53 4 chr6 81163765 81164688 -101250554 - L1MD1 LINE L1 0 6740 5773 34030 87 11 8 chr6 81164689 81170354 -101244888 - L1PA6 LINE L1 -3 6466 786 560 172 0 0 chr6 81170380 81170473 -101244769 - L1PA6 LINE L1 -6367 94 2 5915 232 84 30 chr6 81170478 81174064 -101241178 - L1MD1 LINE L1 -866 5778 1882 2209 90 0 21 chr6 81174064 81174381 -101240861 - AluY SINE Alu 0 311 1 5915 232 84 30 chr6 81174381 81174496 -101240746 - L1MD1 LINE L1 -4762 1882 1775 1747 181 7 3 chr6 81174499 81174808 -101240434 - AluSx SINE Alu -2 310 1 216 0 0 0 chr6 81174811 81174835 -101240407 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 8586 37 1 1 chr6 81174836 81175908 -101239334 + L1P LINE L1 2626 3697 -2449 472 138 11 11 chr6 81175909 81176003 -101239239 + T-rich Low_complexity Low_complexity 2 95 0 459 210 77 47 chr6 81176008 81176186 -101239056 - L1MD1 LINE L1 -4896 1748 1472 23 0 0 0 chr6 81176369 81176392 -101238850 + AT_rich Low_complexity Low_complexity 1 23 0 240 333 0 21 chr6 81176701 81176797 -101238445 + MER117 DNA MER1_type 59 152 -45 271 367 173 0 chr6 81177276 81177426 -101237816 - MER5A DNA MER1_type -3 186 11 183 42 0 0 chr6 81177516 81177540 -101237702 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 566 199 16 179 chr6 81177607 81177858 -101237384 + MER63A DNA MER1_type 1 210 0 642 265 59 25 chr6 81178053 81178257 -101236985 - LTR67 LTR ERVL -6 551 341 782 139 20 25 chr6 81179018 81179380 -101235862 + CT-rich Low_complexity Low_complexity 1 359 0 244 143 0 24 chr6 81179380 81179422 -101235820 + (TCTCC)n Simple_repeat Simple_repeat 2 42 0 1968 145 3 10 chr6 81179424 81179734 -101235508 - AluSx SINE Alu -4 308 1 188 200 18 0 chr6 81181587 81181642 -101233600 + (TA)n Simple_repeat Simple_repeat 2 57 0 4228 171 13 6 chr6 81182094 81182879 -101232363 - L1MA8 LINE L1 -20 6271 5482 411 237 54 42 chr6 81182928 81183238 -101232004 + L1MCc LINE L1 1291 1824 -4944 3854 206 20 7 chr6 81183302 81184159 -101231083 - L1MA8 LINE L1 -2004 4142 3275 * 20008 172 26 6 chr6 81184158 81191722 -101223520 - L1MA1 LINE L1 0 7721 13 2083 192 21 3 chr6 81191718 81192255 -101222987 - L1P4 LINE L1 -723 5442 4895 * 327 238 40 0 chr6 81192269 81192370 -101222872 - L1MC5 LINE L1 -369 7592 7488 7469 30 9 0 chr6 81192370 81193687 -101221555 - L1PA3 LINE L1 -2 6153 4829 11605 34 0 0 chr6 81193687 81195082 -101220160 + L1PA3 LINE L1 3442 4836 -1310 300 190 95 43 chr6 81195149 81195265 -101219977 + HsTC2 DNA Tc2 1771 1892 -6 295 327 19 10 chr6 81195271 81195375 -101219867 + MIR3 SINE MIR 98 202 -6 267 309 87 34 chr6 81196513 81196662 -101218580 + MIR SINE MIR 36 192 -70 23 54 0 0 chr6 81197110 81197147 -101218095 + AT_rich Low_complexity Low_complexity 1 37 0 195 406 40 10 chr6 81197160 81197261 -101217981 - L2 LINE L2 -33 3239 3136 2479 84 0 0 chr6 81198182 81198493 -101216749 + AluY SINE Alu 1 311 0 542 225 56 11 chr6 81199676 81199826 -101215416 - MER31A LTR ERV1 0 543 307 237 33 0 0 chr6 81199837 81199867 -101215375 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2633 23 0 3 chr6 81199867 81200174 -101215068 - L1PA3 LINE L1 -10 6145 5840 1719 24 0 0 chr6 81200174 81200387 -101214855 + L1P LINE L1 5149 5361 -785 1395 220 30 10 chr6 81200387 81200709 -101214533 - MER31A LTR ERV1 -139 327 1 24 0 0 0 chr6 81200738 81200762 -101214480 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr6 81201046 81201089 -101214153 + AT_rich Low_complexity Low_complexity 1 43 0 234 156 0 0 chr6 81201493 81201538 -101213704 + T-rich Low_complexity Low_complexity 1 45 0 10126 55 5 79 chr6 81201576 81203051 -101212191 - SVA Other Other -8 1378 13 28 0 0 0 chr6 81203229 81203257 -101211985 + AT_rich Low_complexity Low_complexity 1 28 0 258 259 111 9 chr6 81204554 81204662 -101210580 - L1ME4a LINE L1 -24 6097 5979 1023 225 47 17 chr6 81204855 81205091 -101210151 + MLT1F1 LTR MaLR 320 562 -5 203 359 94 9 chr6 81205116 81205222 -101210020 + MIR3 SINE MIR 46 160 -48 373 256 65 30 chr6 81205509 81205677 -101209565 - MER104 DNA MER2_type -3 177 4 391 253 162 22 chr6 81206275 81206577 -101208665 + MER113 DNA MER1_type? 138 520 -1 22 0 0 0 chr6 81207613 81207635 -101207607 + AT_rich Low_complexity Low_complexity 1 22 0 239 0 32 0 chr6 81208598 81208629 -101206613 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5795 33 0 0 chr6 81208629 81209303 -101205939 - L1PA5 LINE L1 -24 6130 5457 1945 49 0 0 chr6 81209301 81209610 -101205632 + L1PA5 LINE L1 5146 5454 -700 * 187 298 0 0 chr6 81210099 81210146 -101205096 + L2 LINE L2 3210 3256 -16 216 357 0 24 chr6 81210341 81210425 -101204817 + MIR3 SINE MIR 3 84 -124 537 311 109 0 chr6 81211617 81211800 -101203442 + L3 LINE CR1 518 720 -857 25 0 0 0 chr6 81213364 81213389 -101201853 + AT_rich Low_complexity Low_complexity 1 25 0 916 237 6 0 chr6 81213483 81213660 -101201582 + MER45A DNA AcHobo 1 178 0 23 0 0 0 chr6 81215741 81215764 -101199478 + AT_rich Low_complexity Low_complexity 1 23 0 1302 259 47 45 chr6 81216375 81216800 -101198442 + MLT1G1 LTR MaLR 1 426 -169 21 0 0 0 chr6 81217045 81217066 -101198176 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr6 81217335 81217366 -101197876 + AT_rich Low_complexity Low_complexity 1 31 0 1569 182 17 20 chr6 81217768 81218070 -101197172 - AluJb SINE Alu -11 301 1 330 335 129 44 chr6 81218368 81218863 -101196379 + L2 LINE L2 2330 2866 -448 1675 172 195 21 chr6 81219702 81220132 -101195110 - MLT1D LTR MaLR 0 505 1 1396 178 4 9 chr6 81220345 81220570 -101194672 - MSTC LTR MaLR -38 390 167 241 152 43 0 chr6 81220567 81220613 -101194629 - MSTC LTR MaLR -380 48 1 * 3435 257 53 44 chr6 81220656 81221733 -101193509 - MSTC-int LTR MaLR -645 1090 4 1630 176 4 0 chr6 81221737 81221998 -101193244 - MSTC LTR MaLR 0 428 167 250 190 52 0 chr6 81221983 81222041 -101193201 - MSTC LTR MaLR -367 61 1 * 239 239 60 0 chr6 81222327 81222394 -101192848 + L1M4 LINE L1 4076 4146 -2000 1238 136 0 11 chr6 81222433 81222617 -101192625 + MSTC LTR MaLR 167 348 -80 243 0 0 0 chr6 81222619 81222646 -101192596 + (CAA)n Simple_repeat Simple_repeat 2 28 0 313 299 68 64 chr6 81222652 81222916 -101192326 + L1M4 LINE L1 4230 4494 -1652 209 267 93 12 chr6 81222999 81223085 -101192157 + MIR3 SINE MIR 113 205 -3 23 0 0 0 chr6 81223341 81223364 -101191878 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 81225866 81225895 -101189347 + AT_rich Low_complexity Low_complexity 1 29 0 2183 204 97 15 chr6 81225901 81226425 -101188817 - MLT1F1 LTR MaLR 0 567 1 2272 110 0 0 chr6 81228223 81228531 -101186711 - AluSg SINE Alu -2 308 1 2221 116 0 0 chr6 81228713 81229005 -101186237 - AluSx SINE Alu -18 294 3 22 0 0 0 chr6 81229073 81229095 -101186147 + AT_rich Low_complexity Low_complexity 1 22 0 211 189 0 0 chr6 81229105 81229142 -101186100 - MIR SINE MIR -40 222 186 35 78 0 0 chr6 81231836 81231913 -101183329 + AT_rich Low_complexity Low_complexity 1 77 0 6601 67 10 11 chr6 81231956 81233221 -101182021 - L1PA8A LINE L1 -30 6101 4841 1725 179 7 16 chr6 81233370 81233678 -101181564 - AluJb SINE Alu -7 305 1 1202 218 18 14 chr6 81233678 81233953 -101181289 - MLT1E3 LTR MaLR 0 624 349 444 194 101 11 chr6 81233955 81234137 -101181105 - MLT1E3 LTR MaLR -391 235 53 258 32 0 0 chr6 81234167 81234198 -101181044 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 465 66 0 0 chr6 81234197 81234258 -101180984 + (TA)n Simple_repeat Simple_repeat 2 62 0 192 321 28 83 chr6 81236308 81236417 -101178825 - L2 LINE L2 -34 3238 3136 4842 138 18 10 chr6 81237514 81238335 -101176907 - L1MA2 LINE L1 0 6304 5477 960 163 7 0 chr6 81238336 81238489 -101176753 - AluJb SINE Alu -23 289 136 8321 164 8 30 chr6 81238489 81240267 -101174975 - L1MA2 LINE L1 -743 5403 3734 271 344 11 0 chr6 81240552 81240642 -101174600 - MER117 DNA MER1_type -4 193 103 1799 119 36 0 chr6 81240990 81241241 -101174001 - AluSq SINE Alu -53 260 1 194 345 69 0 chr6 81241268 81241355 -101173887 - L3 LINE CR1 -156 1421 1329 726 231 57 53 chr6 81241401 81241665 -101173577 - L1ME2 LINE L1 -1 6163 5899 1175 203 96 7 chr6 81241687 81241978 -101173264 - L1ME2 LINE L1 -443 5721 5405 288 322 163 51 chr6 81242024 81242453 -101172789 - L3 LINE CR1 -657 920 444 340 309 7 50 chr6 81242581 81242720 -101172522 + MIR SINE MIR 48 180 -82 244 187 13 93 chr6 81242817 81242892 -101172350 + L2 LINE L2 3239 3307 -6 525 263 35 12 chr6 81243393 81243564 -101171678 + L2 LINE L2 1929 2103 -1211 422 217 0 0 chr6 81243564 81243656 -101171586 + L1MA9 LINE L1 2377 2468 -4381 * 7627 229 51 24 chr6 81243643 81245962 -101169280 + L1MA9 LINE L1 3079 5461 -1387 2746 28 0 3 chr6 81245961 81246284 -101168958 - L1PA4 LINE L1 -360 5795 5474 * 2469 38 0 0 chr6 81246282 81246575 -101168667 + L1PA4 LINE L1 5774 6066 -89 * 3161 40 0 0 chr6 81246284 81246661 -101168581 + L1PA4 LINE L1 5774 6152 -3 2505 203 51 10 chr6 81246665 81247680 -101167562 + L1MA9 LINE L1 5449 6495 -519 308 202 8 25 chr6 81247681 81247800 -101167442 + (TA)n Simple_repeat Simple_repeat 1 117 0 259 209 11 66 chr6 81247824 81247915 -101167327 + L1MC4 LINE L1 6613 6698 -1344 200 108 0 27 chr6 81247922 81247959 -101167283 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 732 206 0 0 chr6 81247976 81248122 -101167120 - L1M3 LINE L1 -564 5770 5625 315 0 0 0 chr6 81248129 81248164 -101167078 + (TG)n Simple_repeat Simple_repeat 2 36 0 2183 162 93 33 chr6 81248193 81248567 -101166675 + L1MA9 LINE L1 6494 6905 -109 5121 127 58 8 chr6 81248567 81249425 -101165817 + MER4D LTR ERV1 1 901 -2 2183 162 93 33 chr6 81249425 81249532 -101165710 + L1MA9 LINE L1 6905 7004 -10 6975 138 16 13 chr6 81249808 81250989 -101164253 - L1P LINE L1 -1397 4749 3565 4835 110 10 6 chr6 81250989 81251703 -101163539 + L1PA10 LINE L1 5449 6168 0 276 268 0 0 chr6 81253474 81253545 -101161697 - LTR16C LTR ERVL -69 422 352 340 309 73 30 chr6 81254928 81255093 -101160149 - MIR SINE MIR -44 218 47 828 181 0 0 chr6 81255158 81255296 -101159946 - MLT1B LTR MaLR 0 390 253 1084 151 78 18 chr6 81255762 81255980 -101159262 - MLT1B LTR MaLR -157 233 3 199 347 27 27 chr6 81255982 81256057 -101159185 - L2 LINE L2 -57 3215 3141 238 308 159 9 chr6 81256317 81256424 -101158818 - L2 LINE L2 -511 2803 2681 8648 52 4 0 chr6 81256887 81257954 -101157288 - MER11C LTR ERVK 0 1071 1 24 67 0 0 chr6 81258089 81258134 -101157108 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr6 81258794 81258816 -101156426 + AT_rich Low_complexity Low_complexity 1 22 0 23 101 0 0 chr6 81258943 81259022 -101156220 + AT_rich Low_complexity Low_complexity 1 79 0 25 65 0 0 chr6 81259622 81259668 -101155574 + AT_rich Low_complexity Low_complexity 1 46 0 30 45 0 0 chr6 81260161 81260205 -101155037 + AT_rich Low_complexity Low_complexity 1 44 0 390 343 84 0 chr6 81260635 81260801 -101154441 + MIR SINE MIR 56 235 -27 23 0 0 0 chr6 81261394 81261417 -101153825 + AT_rich Low_complexity Low_complexity 1 23 0 1050 254 73 27 chr6 81262649 81262979 -101152263 - L1MC4a LINE L1 -1022 6786 6442 22 35 0 0 chr6 81263462 81263491 -101151751 + AT_rich Low_complexity Low_complexity 1 29 0 4743 116 23 35 chr6 81263536 81263658 -101151584 - L1PA16 LINE L1 -9 6157 6035 2002 143 39 39 chr6 81263658 81264022 -101151220 + THE1B LTR MaLR 1 364 0 4743 116 23 35 chr6 81264022 81264715 -101150527 - L1PA16 LINE L1 -131 6035 5352 212 198 220 0 chr6 81267565 81267656 -101147586 + MIR SINE MIR 152 262 0 404 302 60 40 chr6 81267820 81268072 -101147170 + MIR SINE MIR 4 260 -2 498 195 34 0 chr6 81268805 81268923 -101146319 - L1MA8 LINE L1 0 6291 6170 2770 13 0 0 chr6 81270061 81270371 -101144871 - AluYb8 SINE Alu -8 310 1 457 171 0 0 chr6 81271129 81271205 -101144037 - AluJ/FLAM SINE Alu -225 87 12 5153 153 30 22 chr6 81271210 81272297 -101142945 + L1PA16 LINE L1 5080 6166 0 237 244 0 47 chr6 81272575 81272661 -101142581 + T-rich Low_complexity Low_complexity 4 85 0 2212 120 0 0 chr6 81272731 81273032 -101142210 + AluSx SINE Alu 1 301 -11 2086 107 6 35 chr6 81274047 81274365 -101140877 - AluSc SINE Alu 0 309 1 544 331 0 7 chr6 81275288 81275446 -101139796 - MIR SINE MIR -44 164 8 12973 188 33 30 chr6 81275552 81277433 -101137809 - L1MA4A LINE L1 0 6303 4430 660 67 0 0 chr6 81277433 81277523 -101137719 + (TA)n Simple_repeat Simple_repeat 2 91 0 12973 188 33 30 chr6 81277523 81278697 -101136545 - L1MA4A LINE L1 -1873 4430 3262 2068 137 0 13 chr6 81278697 81279011 -101136231 - AluSq SINE Alu -1 312 3 12973 188 33 30 chr6 81279011 81279922 -101135320 - L1MA4A LINE L1 -3041 3262 2399 1638 189 3 10 chr6 81279922 81280235 -101135007 - AluJb SINE Alu -1 311 1 12973 188 33 30 chr6 81280235 81280789 -101134453 - L1MA4A LINE L1 -3904 2399 1848 21 0 0 0 chr6 81281320 81281341 -101133901 + AT_rich Low_complexity Low_complexity 1 21 0 478 307 54 82 chr6 81281948 81282316 -101132926 - MLT1I LTR MaLR -14 395 38 3178 34 0 3 chr6 81282366 81282754 -101132488 - L1PA4 LINE L1 -2 6153 5767 23 33 0 0 chr6 81283451 81283481 -101131761 + AT_rich Low_complexity Low_complexity 1 30 0 244 360 0 9 chr6 81283917 81284031 -101131211 + CT-rich Low_complexity Low_complexity 1 113 0 191 88 29 0 chr6 81284041 81284075 -101131167 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 81284465 81284485 -101130757 + (ACATG)n Simple_repeat Simple_repeat 4 23 0 807 147 0 0 chr6 81284637 81284773 -101130469 - AluSg/x SINE Alu 0 310 175 41434 58 3 7 chr6 81284800 81290976 -101124266 - L1PA5 LINE L1 0 6154 2 402 205 157 42 chr6 81292467 81292633 -101122609 + MER53 DNA DNA 2 186 -3 309 184 29 87 chr6 81295651 81295754 -101119488 + MLT1I LTR MaLR 278 374 -35 217 324 68 57 chr6 81295792 81295968 -101119274 - L2 LINE L2 -452 2862 2685 380 266 101 22 chr6 81296052 81296191 -101119051 - MIR SINE MIR -5 257 108 1885 194 14 16 chr6 81296192 81296509 -101118733 - MLT1A1 LTR MaLR 0 365 49 2981 127 65 70 chr6 81296509 81296773 -101118469 + MER4B LTR ERV1 1 265 -345 208 0 0 0 chr6 81296773 81296796 -101118446 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2184 92 0 3 chr6 81296796 81297078 -101118164 - AluSg SINE Alu -29 281 1 2981 127 65 70 chr6 81297078 81297425 -101117817 + MER4B LTR ERV1 263 610 0 1885 194 14 16 chr6 81297425 81297473 -101117769 - MLT1A1 LTR MaLR -316 49 1 331 286 11 11 chr6 81297479 81297570 -101117672 - MIR SINE MIR -157 105 15 264 345 112 0 chr6 81297575 81297807 -101117435 - L2 LINE L2 -702 2612 2355 267 292 0 0 chr6 81299314 81299381 -101115861 - MIR SINE MIR -87 121 55 21 0 0 0 chr6 81299405 81299426 -101115816 + AT_rich Low_complexity Low_complexity 1 21 0 2591 102 13 11 chr6 81299546 81299919 -101115323 - Tigger4(Zombi) DNA MER2_type -194 2537 2164 3492 214 35 63 chr6 81300037 81301104 -101114138 + L1MC3 LINE L1 6741 7777 -8 25 31 0 0 chr6 81303868 81303900 -101111342 + AT_rich Low_complexity Low_complexity 1 32 0 23 68 0 0 chr6 81305216 81305260 -101109982 + AT_rich Low_complexity Low_complexity 1 44 0 2160 63 40 27 chr6 81306527 81306827 -101108415 + AluY SINE Alu 1 304 -7 847 220 23 6 chr6 81306966 81307126 -101108116 - MER5A DNA MER1_type -1 188 23 1551 167 50 36 chr6 81307126 81307486 -101107756 - MLT1A1 LTR MaLR 0 365 1 847 220 23 6 chr6 81307486 81307498 -101107744 - MER5A DNA MER1_type -166 23 13 263 310 84 21 chr6 81307502 81307644 -101107598 + MER5A DNA MER1_type 37 187 -2 242 330 33 33 chr6 81307651 81307742 -101107500 - MIR3 SINE MIR -53 155 65 207 333 24 0 chr6 81308761 81308845 -101106397 - MER5B DNA MER1_type -6 172 87 504 331 66 0 chr6 81310248 81310429 -101104813 - MIR SINE MIR -67 195 3 362 345 15 60 chr6 81310652 81310721 -101104521 + MIR3 SINE MIR 16 87 -121 2283 217 36 48 chr6 81310721 81311311 -101103931 + MER119 DNA MER1_type 1 583 0 362 345 15 60 chr6 81311311 81311441 -101103801 + MIR3 SINE MIR 87 206 -2 2953 22 0 0 chr6 81311740 81312262 -101102980 - L1PA3 LINE L1 -591 5564 5043 5070 20 8 2 chr6 81312262 81312858 -101102384 + L1PA3 LINE L1 5554 6155 0 2480 67 0 6 chr6 81312881 81313193 -101102049 + AluY SINE Alu 1 310 -1 1354 182 96 25 chr6 81314277 81314601 -101100641 - MLT1D LTR MaLR 0 505 159 6585 141 61 1 chr6 81315857 81317017 -101098225 + Tigger3b DNA MER2_type 2 1231 0 1578 198 81 3 chr6 81317322 81317680 -101097562 + MLT1B LTR MaLR 1 386 -4 32 26 0 0 chr6 81318125 81318164 -101097078 + AT_rich Low_complexity Low_complexity 1 39 0 2892 160 157 152 chr6 81318188 81318693 -101096549 + L1MC3 LINE L1 6137 5795 -549 278 325 0 16 chr6 81318693 81318819 -101096423 + MLT1F1 LTR MaLR 24 147 -420 2892 160 157 152 chr6 81318819 81319351 -101095891 + L1MC3 LINE L1 5794 6322 -22 40358 56 23 3 chr6 81320098 81326136 -101089106 - L1PA4 LINE L1 0 6155 1 719 268 50 6 chr6 81326308 81326487 -101088755 + MER5A DNA MER1_type 2 188 -1 622 216 124 60 chr6 81326857 81327075 -101088167 + MIR SINE MIR 18 249 -13 25 51 0 0 chr6 81327521 81327560 -101087682 + AT_rich Low_complexity Low_complexity 1 39 0 6145 105 11 13 chr6 81327600 81329058 -101086184 - L1PA11 LINE L1 0 6174 4709 940 206 0 0 chr6 81329259 81329414 -101085828 + AluJb SINE Alu 132 286 -26 31 26 0 0 chr6 81329420 81329458 -101085784 + AT_rich Low_complexity Low_complexity 1 38 0 201 222 139 69 chr6 81330358 81330430 -101084812 - MIR SINE MIR -21 241 165 * 488 286 73 0 chr6 81330429 81330607 -101084635 + MIR SINE MIR 51 241 -21 2857 164 21 2 chr6 81330662 81331191 -101084051 - L1PB4 LINE L1 -3 6153 5615 22 56 0 0 chr6 81331875 81331911 -101083331 + AT_rich Low_complexity Low_complexity 1 36 0 9858 31 2 0 chr6 81332077 81334068 -101081174 + L1PA3 LINE L1 4193 6187 0 504 299 147 43 chr6 81335041 81335409 -101079833 - LTR33 LTR ERVL -14 507 102 1212 227 11 122 chr6 81335795 81336262 -101078980 - MLT1D-int LTR MaLR 0 1371 957 4967 29 0 2 chr6 81336319 81336903 -101078339 - L1PA3 LINE L1 -3 6152 5570 575 150 24 30 chr6 81336903 81337070 -101078172 + CT-rich Low_complexity Low_complexity 2 167 0 208 283 0 0 chr6 81337070 81337116 -101078126 + polypyrimidine Low_complexity Low_complexity 3 48 0 2505 230 48 85 chr6 81337185 81338093 -101077149 - MLT1D-int LTR MaLR -496 875 1 1723 209 90 59 chr6 81338093 81338581 -101076661 - MLT1D LTR MaLR 0 505 3 21 0 0 0 chr6 81338632 81338653 -101076589 + AT_rich Low_complexity Low_complexity 1 21 0 205 390 8 8 chr6 81339767 81339890 -101075352 + L2 LINE L2 2717 2839 -475 215 275 0 25 chr6 81340492 81340532 -101074710 + A-rich Low_complexity Low_complexity 1 40 -38 443 232 161 0 chr6 81340532 81340644 -101074598 + FLAM_A SINE Alu 1 130 -3 215 275 0 25 chr6 81340644 81340683 -101074559 + A-rich Low_complexity Low_complexity 40 78 0 1299 146 198 58 chr6 81340999 81341328 -101073914 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr6 81341517 81341543 -101073699 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr6 81342510 81342548 -101072694 + AT_rich Low_complexity Low_complexity 1 38 0 243 324 19 9 chr6 81343151 81343259 -101071983 + MIR SINE MIR 18 126 -82 22 56 0 0 chr6 81344031 81344067 -101071175 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr6 81344362 81344390 -101070852 + AT_rich Low_complexity Low_complexity 1 28 0 370 209 30 82 chr6 81344390 81344524 -101070718 - MIR SINE MIR 0 262 136 5061 152 23 8 chr6 81345820 81346698 -101068544 - L1PB3 LINE L1 -3 6151 5261 288 0 0 0 chr6 81346776 81346808 -101068434 + (TG)n Simple_repeat Simple_repeat 2 33 0 1999 132 0 0 chr6 81346840 81347141 -101068101 - AluSg SINE Alu 0 301 1 16545 49 5 1 chr6 81347202 81349489 -101065753 + L1PA4 LINE L1 2977 5272 -874 3490 50 0 0 chr6 81349489 81349923 -101065319 + L1PA4 LINE L1 5719 6155 0 22 0 0 0 chr6 81350206 81350228 -101065014 + AT_rich Low_complexity Low_complexity 1 22 0 313 265 147 28 chr6 81350319 81350530 -101064712 + L1MC/D LINE L1 3850 4085 -2061 440 270 75 52 chr6 81350604 81350927 -101064315 + MLT1J LTR MaLR 102 487 -24 287 291 113 12 chr6 81350962 81351282 -101063960 + L1MC/D LINE L1 4109 4460 -1686 6334 39 18 0 chr6 81351842 81352611 -101062631 - L1P LINE L1 -1830 4316 3534 7626 53 5 0 chr6 81352611 81354359 -101060883 + L1PA5 LINE L1 4398 6154 0 214 24 0 73 chr6 81354422 81354463 -101060779 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 1418 170 72 15 chr6 81354597 81354882 -101060360 - AluJo SINE Alu 0 302 3 338 253 154 58 chr6 81354884 81355176 -101060066 + L1MC/D LINE L1 5366 5685 -2123 339 25 0 0 chr6 81355297 81355337 -101059905 + (TA)n Simple_repeat Simple_repeat 1 40 0 207 0 0 0 chr6 81355336 81355359 -101059883 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 302 220 130 20 chr6 81355505 81355605 -101059637 - L1MEc LINE L1 -5748 648 538 306 233 0 14 chr6 81355841 81355914 -101059328 - AluS SINE Alu -229 72 1 17972 50 5 2 chr6 81355974 81358262 -101056980 + L1PA4 LINE L1 2977 5272 -874 3490 50 0 0 chr6 81358262 81358696 -101056546 + L1PA4 LINE L1 5719 6155 0 22 0 0 0 chr6 81358979 81359001 -101056241 + AT_rich Low_complexity Low_complexity 1 22 0 313 265 147 28 chr6 81359092 81359303 -101055939 + L1M4 LINE L1 3850 4085 -2061 440 270 75 52 chr6 81359377 81359700 -101055542 + MLT1J LTR MaLR 102 487 -24 287 291 113 12 chr6 81359735 81360055 -101055187 + L1M4 LINE L1 4109 4460 -1686 6313 40 18 0 chr6 81360615 81361384 -101053858 - L1P LINE L1 -1830 4316 3534 7657 55 7 0 chr6 81361384 81363139 -101052103 + L1PA5 LINE L1 4398 6161 0 22 0 0 0 chr6 81364102 81364124 -101051118 + AT_rich Low_complexity Low_complexity 1 22 0 391 253 162 22 chr6 81365160 81365462 -101049780 - MER113 DNA MER1_type? -1 520 138 373 256 65 30 chr6 81366060 81366228 -101049014 + MER104 DNA MER2_type 4 177 -3 203 359 94 9 chr6 81366515 81366621 -101048621 - MIR3 SINE MIR -48 160 46 1023 225 47 17 chr6 81366646 81366882 -101048360 - MLT1F1 LTR MaLR -5 562 320 258 259 111 9 chr6 81367075 81367183 -101048059 + L1ME4a LINE L1 5979 6097 -24 28 0 0 0 chr6 81368478 81368506 -101046736 + AT_rich Low_complexity Low_complexity 1 28 0 5539 105 27 17 chr6 81368684 81369525 -101045717 + SVA Other Other 19 868 -518 740 250 64 6 chr6 81369734 81369906 -101045336 - MER5A DNA MER1_type -6 183 2 28 0 0 0 chr6 81371423 81371451 -101043791 + AT_rich Low_complexity Low_complexity 1 28 0 28866 51 5 11 chr6 81371872 81375641 -101039601 - L1P LINE L1 -943 5203 1458 1913 100 0 0 chr6 81375797 81376058 -101039184 - L1P LINE L1 -5885 261 1 716 263 50 6 chr6 81376230 81376409 -101038833 + MER5A DNA MER1_type 2 188 -1 616 216 124 60 chr6 81376779 81376997 -101038245 + MIR SINE MIR 18 249 -13 25 51 0 0 chr6 81377442 81377481 -101037761 + AT_rich Low_complexity Low_complexity 1 39 0 6198 103 13 13 chr6 81377521 81378978 -101036264 - L1PA11 LINE L1 0 6174 4709 954 206 0 0 chr6 81379179 81379334 -101035908 + AluJb SINE Alu 132 286 -26 31 26 0 0 chr6 81379340 81379378 -101035864 + AT_rich Low_complexity Low_complexity 1 38 0 197 222 139 69 chr6 81380278 81380350 -101034892 - MIR SINE MIR -21 241 165 * 475 286 73 0 chr6 81380349 81380527 -101034715 + MIR SINE MIR 51 241 -21 2864 164 21 2 chr6 81380582 81381111 -101034131 - L1PB4 LINE L1 -3 6153 5615 22 56 0 0 chr6 81381795 81381831 -101033411 + AT_rich Low_complexity Low_complexity 1 36 0 9602 28 3 0 chr6 81381997 81383162 -101032080 + L1P LINE L1 4193 5361 -785 1395 219 30 9 chr6 81383162 81383483 -101031759 - MER31A LTR ERV1 -139 327 1 24 0 0 0 chr6 81383512 81383536 -101031706 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr6 81383820 81383863 -101031379 + AT_rich Low_complexity Low_complexity 1 43 0 277 296 12 31 chr6 81384273 81384474 -101030768 + CT-rich Low_complexity Low_complexity 1 197 0 15202 83 3 3 chr6 81384806 81386900 -101028342 - L1P LINE L1 -3527 2619 526 357 24 0 0 chr6 81386995 81387037 -101028205 + (A)n Simple_repeat Simple_repeat 1 42 0 396 205 157 42 chr6 81388010 81388176 -101027066 + MER53 DNA DNA 2 186 -3 310 184 29 87 chr6 81391194 81391297 -101023945 + MLT1I LTR MaLR 278 374 -35 275 261 92 54 chr6 81391381 81391511 -101023731 - L2 LINE L2 -495 2819 2685 372 266 101 22 chr6 81391595 81391734 -101023508 - MIR SINE MIR -5 257 108 1884 194 14 16 chr6 81391735 81392052 -101023190 - MLT1A1 LTR MaLR 0 365 48 3008 129 65 69 chr6 81392052 81392316 -101022926 + MER4B LTR ERV1 1 264 -346 2246 89 0 3 chr6 81392316 81392625 -101022617 - AluSg SINE Alu 0 308 1 3008 129 65 69 chr6 81392625 81392971 -101022271 + MER4B LTR ERV1 264 610 0 1884 194 14 16 chr6 81392971 81393019 -101022223 - MLT1A1 LTR MaLR -317 48 1 334 286 11 11 chr6 81393025 81393116 -101022126 - MIR SINE MIR -157 105 15 270 345 112 0 chr6 81393121 81393353 -101021889 - L2 LINE L2 -702 2612 2355 266 292 0 0 chr6 81394860 81394927 -101020315 - MIR SINE MIR -87 121 55 21 0 0 0 chr6 81394951 81394972 -101020270 + AT_rich Low_complexity Low_complexity 1 21 0 2583 102 13 11 chr6 81395092 81395465 -101019777 - Tigger4(Zombi) DNA MER2_type -194 2537 2164 3408 215 35 63 chr6 81395583 81396650 -101018592 + L1MC3 LINE L1 6741 7777 -8 25 31 0 0 chr6 81399413 81399445 -101015797 + AT_rich Low_complexity Low_complexity 1 32 0 1315 77 44 0 chr6 81399972 81400155 -101015087 + L1PA4 LINE L1 5082 5272 -874 3509 48 0 0 chr6 81400155 81400589 -101014653 + L1PA4 LINE L1 5719 6155 0 22 0 0 0 chr6 81400872 81400894 -101014348 + AT_rich Low_complexity Low_complexity 1 22 0 336 275 142 24 chr6 81400985 81401196 -101014046 + L1MC/D LINE L1 3850 4085 -2061 442 270 75 52 chr6 81401270 81401593 -101013649 + MLT1J LTR MaLR 102 487 -24 327 291 113 12 chr6 81401628 81401948 -101013294 + L1MC/D LINE L1 4109 4460 -1686 6336 38 18 0 chr6 81402508 81403277 -101011965 - L1P LINE L1 -1830 4316 3534 7613 53 5 0 chr6 81403277 81405025 -101010217 + L1PA5 LINE L1 4398 6154 0 214 24 0 73 chr6 81405088 81405129 -101010113 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 1391 170 72 15 chr6 81405263 81405548 -101009694 - AluJo SINE Alu 0 302 3 361 271 144 48 chr6 81405550 81405842 -101009400 + L1MC/D LINE L1 5366 5685 -2123 230 189 81 40 chr6 81405809 81405883 -101009359 - L1MC4 LINE L1 -1350 6692 6616 * 465 19 0 0 chr6 81405963 81406017 -101009225 + (TA)n Simple_repeat Simple_repeat 1 54 0 189 0 0 0 chr6 81406016 81406037 -101009205 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 305 220 130 20 chr6 81406183 81406283 -101008959 - L1MEc LINE L1 -5748 648 538 416 296 14 14 chr6 81406321 81406463 -101008779 - Charlie2 DNA MER1_type -2635 147 6 237 33 0 0 chr6 81406960 81406990 -101008252 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr6 81407836 81407865 -101007377 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr6 81408884 81408918 -101006324 + AT_rich Low_complexity Low_complexity 1 34 0 507 322 81 29 chr6 81410349 81410887 -101004355 - L2 LINE L2 -9 3304 2739 432 55 0 0 chr6 81411981 81412036 -101003206 + (TA)n Simple_repeat Simple_repeat 2 56 0 870 239 25 15 chr6 81412036 81412237 -101003005 + MER82 DNA MER2_type 1 203 -450 204 179 0 0 chr6 81412237 81412276 -101002966 + (TG)n Simple_repeat Simple_repeat 1 39 0 633 211 37 43 chr6 81412293 81412454 -101002788 + MER82 DNA MER2_type 494 653 0 295 392 101 6 chr6 81413351 81413509 -101001733 + MIR3 SINE MIR 19 191 -17 5592 187 54 15 chr6 81413962 81415229 -101000013 - L1MA5A LINE L1 0 6297 4941 2180 99 14 0 chr6 81415229 81415522 -100999720 + AluSp SINE Alu 1 297 -16 5592 187 54 15 chr6 81415522 81415867 -100999375 - L1MA5A LINE L1 -1356 4941 4611 1885 188 16 0 chr6 81416519 81416896 -100998346 - L1 LINE L1 -934 5212 4830 1391 164 7 18 chr6 81416907 81417182 -100998060 + L1 LINE L1 4511 4782 -1364 1222 242 109 40 chr6 81417315 81417894 -100997348 + MER114 LTR ERV 7 625 -23 15290 174 33 22 chr6 81417894 81420356 -100994886 + L1MA2 LINE L1 738 3171 -4552 7324 46 1 0 chr6 81420356 81421534 -100993708 + L1PA5 LINE L1 4977 6154 0 15290 174 33 22 chr6 81421534 81425971 -100989271 + L1MA2 LINE L1 3171 7717 -6 797 318 143 55 chr6 81426183 81427432 -100987810 + L2 LINE L2 635 1992 -1322 280 372 29 7 chr6 81427427 81427564 -100987678 + MIR SINE MIR 59 198 -64 * 227 291 0 38 chr6 81427563 81427642 -100987600 + L2 LINE L2 2611 2686 -628 * 734 267 139 57 chr6 81427913 81428414 -100986828 - MLT1H1 LTR MaLR 0 590 1 406 349 83 33 chr6 81428454 81428755 -100986487 + L2 LINE L2 2948 3263 -9 207 332 199 36 chr6 81430402 81430598 -100984644 - MIR SINE MIR -6 256 29 200 307 50 0 chr6 81431266 81431360 -100983882 + MIR SINE MIR 48 148 -63 182 185 56 0 chr6 81431463 81431517 -100983725 + GA-rich Low_complexity Low_complexity 5 61 0 278 352 42 14 chr6 81433213 81433355 -100981887 + MIR3 SINE MIR 54 199 -9 2330 63 0 3 chr6 81433670 81433970 -100981272 - L1PA4 LINE L1 -9 6146 5848 818 316 69 39 chr6 81433986 81434133 -100981109 - MLT1A2 LTR MaLR -103 271 161 7037 60 0 0 chr6 81434133 81435385 -100979857 - L1PA6 LINE L1 -1 6153 4900 818 316 69 39 chr6 81435385 81435551 -100979691 - MLT1A2 LTR MaLR -213 161 1 1863 132 52 0 chr6 81436287 81436602 -100978640 - AluSx SINE Alu 0 312 8 22 0 0 0 chr6 81437713 81437735 -100977507 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr6 81437978 81438016 -100977226 + AT_rich Low_complexity Low_complexity 1 38 0 522 280 0 8 chr6 81438024 81438156 -100977086 + FLAM_A SINE Alu 2 132 -10 259 111 19 19 chr6 81438168 81438222 -100977020 + (TA)n Simple_repeat Simple_repeat 2 55 0 38 61 0 0 chr6 81438331 81438397 -100976845 + AT_rich Low_complexity Low_complexity 1 66 0 237 248 44 18 chr6 81438548 81438661 -100976581 + (TTTA)n Simple_repeat Simple_repeat 1 116 0 2206 100 0 7 chr6 81438745 81439036 -100976206 + AluSq SINE Alu 13 301 -12 24 32 0 0 chr6 81439092 81439123 -100976119 + AT_rich Low_complexity Low_complexity 1 31 0 198 91 0 0 chr6 81439396 81439429 -100975813 + (TG)n Simple_repeat Simple_repeat 2 34 0 6352 83 21 6 chr6 81439449 81440719 -100974523 - L1PA8A LINE L1 -2 6129 4842 1804 138 37 3 chr6 81440780 81441077 -100974165 - AluSq SINE Alu -6 307 1 22 35 0 0 chr6 81441412 81441441 -100973801 + AT_rich Low_complexity Low_complexity 1 29 0 347 118 44 15 chr6 81441571 81441639 -100973603 - L1MA6 LINE L1 0 6300 6231 279 271 21 62 chr6 81441687 81441831 -100973411 - HAL1b LINE L1 -751 597 460 227 103 26 0 chr6 81442098 81442137 -100973105 + (TG)n Simple_repeat Simple_repeat 2 41 0 216 0 0 0 chr6 81443261 81443285 -100971957 + (TA)n Simple_repeat Simple_repeat 2 25 0 22 56 0 0 chr6 81444436 81444472 -100970770 + AT_rich Low_complexity Low_complexity 1 36 0 251 304 256 42 chr6 81444631 81444822 -100970420 + MIR SINE MIR 17 248 -14 21 57 0 0 chr6 81445141 81445176 -100970066 + AT_rich Low_complexity Low_complexity 1 35 0 1892 139 41 51 chr6 81445466 81445516 -100969726 - L1MA9 LINE L1 0 6312 6263 417 39 0 0 chr6 81445516 81445567 -100969675 + (TA)n Simple_repeat Simple_repeat 1 51 0 1892 139 41 51 chr6 81445567 81445627 -100969615 - L1MA9 LINE L1 -49 6263 6204 1906 116 10 14 chr6 81445627 81445921 -100969321 + AluSg SINE Alu 8 300 -10 1892 139 41 51 chr6 81445921 81446390 -100968852 - L1MA9 LINE L1 -108 6204 5800 4930 174 26 9 chr6 81446725 81448494 -100966748 - L1PB1 LINE L1 -128 6023 4232 2339 198 71 42 chr6 81448882 81449620 -100965622 + LTR1B LTR ERV1 23 785 0 274 319 102 45 chr6 81449911 81450068 -100965174 + L2 LINE L2 3148 3313 0 25 0 0 0 chr6 81450102 81450127 -100965115 + AT_rich Low_complexity Low_complexity 1 25 0 484 208 72 25 chr6 81451064 81451258 -100963984 + LTR50 LTR ERVL 2 251 -544 966 244 186 5 chr6 81451315 81451692 -100963550 + LTR50 LTR ERVL 344 788 -7 2083 198 32 42 chr6 81452871 81453375 -100961867 - MLT1D LTR MaLR -6 499 1 2177 105 0 0 chr6 81453497 81453782 -100961460 + AluSc SINE Alu 1 285 -24 2038 102 14 11 chr6 81455093 81455377 -100959865 - AluSg1 SINE Alu -23 286 2 618 210 28 61 chr6 81456361 81456542 -100958700 + L1PA13 LINE L1 727 901 -5886 604 312 0 0 chr6 81456560 81456714 -100958528 - MIR SINE MIR -107 155 2 3820 60 4 0 chr6 81457265 81457750 -100957492 - L1PA7 LINE L1 -11 6143 5657 3257 41 11 11 chr6 81457750 81458194 -100957048 + L1PA7 LINE L1 5216 5659 -495 1567 209 42 0 chr6 81458189 81458547 -100956695 - L1PA13 LINE L1 -3930 2867 2495 * 6229 162 52 26 chr6 81458560 81460463 -100954779 - L1MA2 LINE L1 -4 6300 4332 4025 108 20 18 chr6 81460463 81461062 -100954180 - MER4A LTR ERV1 0 600 1 6229 162 52 26 chr6 81461062 81461340 -100953902 - L1MA2 LINE L1 -1972 4332 4063 1502 249 40 11 chr6 81461336 81461714 -100953528 - L1PA15-16 LINE L1 -7160 405 17 * 4405 52 25 2 chr6 81461743 81462303 -100952939 - L1PA7 LINE L1 -1 6153 5581 4921 249 25 10 chr6 81462309 81463683 -100951559 - L1PA13 LINE L1 -4294 2503 1095 3353 290 15 21 chr6 81463684 81464595 -100950647 - L1PA13 LINE L1 -5881 906 1 1027 254 25 18 chr6 81464609 81464936 -100950306 - L1MDb LINE L1 -5332 1077 749 3938 48 23 0 chr6 81465373 81465852 -100949390 + LTR2B LTR ERV1 1 490 0 2632 95 8 3 chr6 81465852 81466230 -100949012 + Harlequin LTR ERV1 1 380 -6516 * 4528 76 16 22 chr6 81466225 81466871 -100948371 + Harlequin LTR ERV1 262 903 -5993 * 6550 66 22 9 chr6 81466856 81467846 -100947396 + Harlequin LTR ERV1 1572 2574 -4322 * 23826 122 13 5 chr6 81467845 81471362 -100943880 + Harlequin LTR ERV1 3352 6895 -1 3917 58 17 0 chr6 81471362 81471844 -100943398 + LTR2B LTR ERV1 1 490 0 2198 104 13 34 chr6 81472267 81472709 -100942533 - L1P4 LINE L1 -571 5592 5156 2935 102 20 20 chr6 81472709 81473161 -100942081 + L1PA13 LINE L1 5708 6159 -4 25 0 0 0 chr6 81473164 81473189 -100942053 + AT_rich Low_complexity Low_complexity 1 25 0 300 280 53 0 chr6 81473351 81473426 -100941816 + L2 LINE L2 3194 3272 0 543 325 90 43 chr6 81473468 81473844 -100941398 - L2 LINE L2 0 3313 2920 188 384 35 0 chr6 81474191 81474277 -100940965 + L2 LINE L2 3170 3258 -14 27 49 0 0 chr6 81474532 81474573 -100940669 + AT_rich Low_complexity Low_complexity 1 41 0 466 289 181 10 chr6 81475366 81475570 -100939672 + MIR SINE MIR 15 253 -9 310 236 189 75 chr6 81475750 81475962 -100939280 + L2 LINE L2 3061 3296 -17 34 55 0 0 chr6 81476065 81476120 -100939122 + AT_rich Low_complexity Low_complexity 1 55 0 647 132 23 0 chr6 81476759 81476933 -100938309 - HSAT4 Satellite centromeric -5 178 1 3120 206 15 14 chr6 81477508 81478157 -100937085 + MER82 DNA MER2_type 3 652 -1 24 0 0 0 chr6 81478284 81478308 -100936934 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr6 81478498 81478546 -100936696 + AT_rich Low_complexity Low_complexity 1 48 0 318 264 233 16 chr6 81479200 81479329 -100935913 - MIR SINE MIR -92 170 14 246 105 0 0 chr6 81479579 81479617 -100935625 + (TG)n Simple_repeat Simple_repeat 2 39 0 872 194 5 68 chr6 81479899 81480121 -100935121 - MLT1B LTR MaLR -46 344 137 5384 149 21 64 chr6 81480123 81481239 -100934003 - L1MC1 LINE L1 -36 6577 5509 857 253 27 4 chr6 81481232 81481457 -100933785 - L1M4 LINE L1 -2414 3732 3503 * 1035 189 80 8 chr6 81481496 81481760 -100933482 - L1MC1 LINE L1 -4819 1607 1325 817 31 0 0 chr6 81481761 81481858 -100933384 + L1PA3 LINE L1 2 98 -6048 * 36477 41 27 6 chr6 81481827 81486030 -100929212 + L1PA3 LINE L1 580 4930 -1225 6213 48 12 3 chr6 81486030 81486817 -100928425 + SVA Other Other 631 1424 0 36477 41 27 6 chr6 81486817 81488069 -100927173 + L1PA3 LINE L1 4930 6155 0 6418 171 41 32 chr6 81488069 81489384 -100925858 - L1MC1 LINE L1 -5088 1338 12 201 171 24 0 chr6 81491028 81491069 -100924173 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 412 305 119 42 chr6 81491265 81491626 -100923616 - L1ME3A LINE L1 -9 6579 6191 414 206 22 9 chr6 81491699 81491927 -100923315 + (TA)n Simple_repeat Simple_repeat 1 231 0 826 291 82 51 chr6 81491929 81492366 -100922876 - L1ME3A LINE L1 -763 5801 5379 14806 37 1 13 chr6 81492366 81494985 -100920257 - L1PA5 LINE L1 0 6154 3557 826 291 82 51 chr6 81494985 81495242 -100920000 - L1ME3A LINE L1 -1185 5379 5072 806 166 45 0 chr6 81495242 81495399 -100919843 - L1MB1 LINE L1 -5 6163 6000 826 291 82 51 chr6 81495399 81495571 -100919671 - L1ME3A LINE L1 -1492 5072 4907 398 304 56 101 chr6 81495607 81495913 -100919329 + LTR16C LTR ERVL 44 335 -156 680 283 71 32 chr6 81495938 81496404 -100918838 - L1ME3A LINE L1 -2280 4284 3801 630 303 113 15 chr6 81496405 81497275 -100917967 - L1ME3A LINE L1 -2810 3754 2800 21 36 0 0 chr6 81497363 81497391 -100917851 + AT_rich Low_complexity Low_complexity 1 28 0 483 321 84 32 chr6 81497407 81497812 -100917430 - L1ME3A LINE L1 -4092 2653 2228 382 270 61 32 chr6 81497827 81498105 -100917137 - L1MCa LINE L1 -4578 2167 1687 269 213 65 84 chr6 81498269 81498424 -100916818 - L1MCa LINE L1 -4918 1636 1485 197 180 20 0 chr6 81498642 81498692 -100916550 + (TA)n Simple_repeat Simple_repeat 1 51 0 325 260 108 80 chr6 81498700 81498950 -100916292 - L1MCa LINE L1 -4903 1142 886 1226 300 62 87 chr6 81499654 81500264 -100914978 - MLT1G LTR MaLR 0 590 1 308 204 52 99 chr6 81500461 81500652 -100914590 + HAL1b LINE L1 737 918 -430 23 33 0 0 chr6 81500772 81500802 -100914440 + AT_rich Low_complexity Low_complexity 1 30 0 5765 257 43 34 chr6 81501145 81503509 -100911733 + L1MA6 LINE L1 12 3075 -4490 1982 198 48 24 chr6 81503509 81503924 -100911318 - Tigger2a DNA MER2_type 0 434 10 9779 185 45 131 chr6 81503933 81504579 -100910663 + L1MA6 LINE L1 3074 3774 -3945 1230 123 17 0 chr6 81504579 81504758 -100910484 + L1PA10 LINE L1 5974 6155 -13 9779 185 45 131 chr6 81504758 81508637 -100906605 + L1MA6 LINE L1 3774 7151 -568 13747 36 0 0 chr6 81508637 81511071 -100904171 + L1PA2 LINE L1 3717 6150 -5 9779 185 45 131 chr6 81511071 81511419 -100903823 + L1MA6 LINE L1 7151 7527 -192 405 192 10 10 chr6 81511420 81511519 -100903723 + L1MA6 LINE L1 7621 7719 0 292 121 0 30 chr6 81511574 81511640 -100903602 + (TA)n Simple_repeat Simple_repeat 1 64 0 796 92 42 0 chr6 81511643 81511762 -100903480 - L1PA7 LINE L1 -16 6138 6015 1337 88 0 0 chr6 81511762 81511955 -100903287 + L1P LINE L1 5009 5201 -945 544 198 0 0 chr6 81511942 81512053 -100903189 + L1MA6 LINE L1 5952 6062 -238 * 5228 47 20 19 chr6 81512055 81512845 -100902397 - L1PA7 LINE L1 -117 6014 5254 2735 90 8 2 chr6 81512855 81513257 -100901985 - L1PA7 LINE L1 -956 5190 4787 * 4139 88 15 2 chr6 81513255 81513845 -100901397 + L1PA7 LINE L1 4192 4789 -1357 1161 191 88 90 chr6 81514624 81515058 -100900184 - LTR54B LTR ERV1 -65 433 1 638 199 11 78 chr6 81515058 81515249 -100899993 + MLT1D LTR MaLR 1 178 -327 281 211 56 14 chr6 81515388 81515459 -100899783 + MLT1D LTR MaLR 249 322 -183 208 318 15 0 chr6 81515459 81515525 -100899717 + GA-rich Low_complexity Low_complexity 3 69 0 675 179 17 8 chr6 81515525 81515642 -100899600 + MLT1D LTR MaLR 308 425 -80 41 0 0 0 chr6 81515642 81515683 -100899559 + AT_rich Low_complexity Low_complexity 1 41 0 34 42 0 0 chr6 81515794 81515842 -100899400 + AT_rich Low_complexity Low_complexity 1 48 0 553 120 0 0 chr6 81515970 81516045 -100899197 + MSTA LTR MaLR 1 75 -353 436 351 23 7 chr6 81517227 81517526 -100897716 - L1MC4a LINE L1 -1921 5887 5584 10271 163 34 11 chr6 81517598 81519184 -100896058 - L1MA3 LINE L1 0 6305 4616 2025 82 75 10 chr6 81519184 81519476 -100895766 - AluSp SINE Alu 0 313 3 10271 163 34 11 chr6 81519476 81520874 -100894368 - L1MA3 LINE L1 -1689 4616 3252 543 99 44 0 chr6 81521035 81521126 -100894116 - AluSc SINE Alu -214 95 1 201 244 0 0 chr6 81521804 81521849 -100893393 + (CA)n Simple_repeat Simple_repeat 2 46 0 214 192 0 77 chr6 81522262 81522314 -100892928 + MIR SINE MIR 205 252 -10 283 148 19 0 chr6 81522325 81522379 -100892863 - L1PA5 LINE L1 -235 5919 5865 1916 62 4 12 chr6 81522379 81522635 -100892607 + L1PA5 LINE L1 5900 6153 -1 577 267 73 6 chr6 81522754 81522919 -100892323 - MIR SINE MIR -51 211 36 1351 231 14 14 chr6 81523238 81523532 -100891710 + AluJo SINE Alu 1 294 -8 372 163 62 0 chr6 81523583 81523663 -100891579 + L1 LINE L1 3431 3515 -2631 * 2920 228 50 21 chr6 81523654 81524665 -100890577 + L1MA8 LINE L1 3425 4461 -3104 2964 257 27 43 chr6 81524670 81525460 -100889782 + L1PA13 LINE L1 1 777 -6010 885 272 16 13 chr6 81525493 81525806 -100889436 - L1MA3 LINE L1 -3549 2597 2284 302 308 39 19 chr6 81525813 81525917 -100889325 + L1PA13 LINE L1 789 894 -5893 8363 208 32 22 chr6 81525921 81526182 -100889060 + L1MA8 LINE L1 4498 4755 -2810 315 0 0 0 chr6 81526182 81526217 -100889025 + (TA)n Simple_repeat Simple_repeat 1 35 0 8363 208 32 22 chr6 81526217 81528025 -100887217 + L1MA8 LINE L1 4755 6588 -977 3781 146 34 19 chr6 81528026 81528748 -100886494 + L1MA8 LINE L1 6945 7680 -30 2153 161 3 0 chr6 81528748 81529109 -100886133 - MER47A DNA MER2_type -1 365 4 3781 146 34 19 chr6 81529109 81529127 -100886115 + L1MA8 LINE L1 7680 7696 -14 39 0 0 0 chr6 81529137 81529176 -100886066 + AT_rich Low_complexity Low_complexity 1 39 0 4667 17 0 0 chr6 81529226 81529761 -100885481 - L1PA2 LINE L1 -1 6154 5620 27 49 0 0 chr6 81531387 81531428 -100883814 + AT_rich Low_complexity Low_complexity 1 41 0 26 50 0 0 chr6 81531671 81531711 -100883531 + AT_rich Low_complexity Low_complexity 1 40 0 408 280 47 7 chr6 81532004 81532154 -100883088 + MER103 DNA DNA 8 163 -3 2966 72 3 0 chr6 81532685 81533061 -100882181 + MLT2A1 LTR ERVL 1 377 -67 498 33 0 0 chr6 81533062 81533122 -100882120 + (TA)n Simple_repeat Simple_repeat 2 61 0 5371 85 14 10 chr6 81533122 81533853 -100881389 + HERVL-A1 LTR ERVL 55 788 -4866 * 36898 88 9 8 chr6 81533833 81538796 -100876446 + HERVL-A1 LTR ERVL 682 5654 0 2946 97 5 0 chr6 81538796 81539198 -100876044 + MLT2A1 LTR ERVL 1 404 -40 726 12 0 0 chr6 81539235 81539318 -100875924 + (TA)n Simple_repeat Simple_repeat 1 83 0 249 312 147 19 chr6 81539568 81539725 -100875517 - MER5B DNA MER1_type -1 177 1 23 0 0 0 chr6 81539734 81539757 -100875485 + AT_rich Low_complexity Low_complexity 1 23 0 1801 147 68 42 chr6 81539797 81540152 -100875090 - THE1B LTR MaLR 0 364 1 11109 107 21 1 chr6 81540152 81541701 -100873541 - THE1B-int LTR MaLR 0 1580 1 2097 131 54 17 chr6 81541702 81542052 -100873190 - THE1B LTR MaLR -1 363 1 2549 75 0 0 chr6 81542295 81542603 -100872639 - AluY SINE Alu -3 308 1 469 233 89 7 chr6 81542725 81542871 -100872371 + MIR SINE MIR 105 262 0 22 0 0 0 chr6 81543467 81543489 -100871753 + AT_rich Low_complexity Low_complexity 1 22 0 237 186 0 0 chr6 81543507 81543577 -100871665 + T-rich Low_complexity Low_complexity 1 70 0 1533 51 30 0 chr6 81543578 81543775 -100871467 - L1PA2 LINE L1 -3 6152 5950 5698 108 17 23 chr6 81544148 81545048 -100870194 - L1MA1 LINE L1 -10 7711 6818 3006 104 2 26 chr6 81545051 81545549 -100869693 - L1MA1 LINE L1 -4385 3180 2695 8028 202 40 23 chr6 81545552 81547222 -100868020 - L1MA1 LINE L1 -5853 1712 15 2100 134 67 3 chr6 81548431 81548773 -100866469 - THE1B LTR MaLR 0 364 1 31 0 0 0 chr6 81548907 81548938 -100866304 + AT_rich Low_complexity Low_complexity 1 31 0 8102 233 23 7 chr6 81549770 81551489 -100863753 + L1M1 LINE L1 15 1760 -5805 33343 84 6 1 chr6 81551489 81555850 -100859392 - HERVL-A1 LTR ERVL -1272 4382 1 312 79 0 14 chr6 81555850 81555890 -100859352 - MLT2A1 LTR ERVL 0 444 418 885 89 0 0 chr6 81555890 81556014 -100859228 + (TA)n Simple_repeat Simple_repeat 2 125 0 312 79 0 14 chr6 81556014 81556028 -100859214 - MLT2A1 LTR ERVL -26 418 405 180 0 0 0 chr6 81556043 81556063 -100859179 + (TA)n Simple_repeat Simple_repeat 1 20 0 2674 116 28 0 chr6 81556132 81556520 -100858722 - MLT2A1 LTR ERVL -45 399 1 8586 97 18 2 chr6 81556520 81557701 -100857541 + HERVL-B3 LTR ERVL 4455 5654 0 1412 214 77 89 chr6 81557702 81558262 -100856980 + MLT2B3 LTR ERVL 2 554 0 440 99 14 0 chr6 81558264 81558335 -100856907 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 2948 195 27 0 chr6 81558335 81558854 -100856388 - MLT2B3 LTR ERVL -19 535 3 23 0 0 0 chr6 81561494 81561517 -100853725 + AT_rich Low_complexity Low_complexity 1 23 0 2161 212 42 23 chr6 81561646 81562213 -100853029 - L1MC3 LINE L1 -1 7784 7207 705 247 40 28 chr6 81563193 81563580 -100851662 - MLT1J2 LTR MaLR 0 450 26 2652 131 50 50 chr6 81563628 81564124 -100851118 - LTR43 LTR ERV1 -75 527 32 25 0 0 0 chr6 81564225 81564250 -100850992 + AT_rich Low_complexity Low_complexity 1 25 0 490 218 45 0 chr6 81566250 81566360 -100848882 - MER94 DNA DNA -16 118 4 183 316 90 30 chr6 81566482 81566615 -100848627 - L2 LINE L2 -480 2834 2694 468 253 68 84 chr6 81566641 81566704 -100848538 + MLT1G1 LTR MaLR 349 412 -183 1946 215 27 80 chr6 81566704 81567289 -100847953 - MLT2B3 LTR ERVL 0 554 1 468 253 68 84 chr6 81567289 81567462 -100847780 + MLT1G1 LTR MaLR 412 581 -14 21 36 0 0 chr6 81567477 81567505 -100847737 + AT_rich Low_complexity Low_complexity 1 28 0 263 316 28 49 chr6 81567547 81567794 -100847448 + L1M4 LINE L1 3910 4151 -1995 312 309 60 30 chr6 81568800 81568968 -100846274 + L1M LINE L1 5255 5427 -2381 310 293 14 95 chr6 81569242 81569389 -100845853 - L1MC/D LINE L1 -541 5580 5446 389 154 0 13 chr6 81570582 81570660 -100844582 + (CA)n Simple_repeat Simple_repeat 2 78 0 802 75 0 0 chr6 81570702 81570809 -100844433 - MLT2A2 LTR ERVL -346 107 1 340 329 87 31 chr6 81570818 81571208 -100844034 + MLT1L LTR MaLR 168 606 -9 2752 125 24 0 chr6 81571323 81571747 -100843495 - L1PA15 LINE L1 -2 6163 5730 391 215 46 46 chr6 81571821 81571951 -100843291 - MER94 DNA DNA 0 134 5 296 333 59 0 chr6 81572031 81572133 -100843109 + L2 LINE L2 3206 3313 0 297 275 22 80 chr6 81572156 81572294 -100842948 + MIR SINE MIR 82 211 -51 21 0 0 0 chr6 81572297 81572318 -100842924 + AT_rich Low_complexity Low_complexity 1 21 0 1438 157 55 4 chr6 81572728 81572963 -100842279 + AluSq SINE Alu 1 247 -66 216 163 0 0 chr6 81572964 81573007 -100842235 + A-rich Low_complexity Low_complexity 1 43 0 216 86 0 0 chr6 81574137 81574172 -100841070 + (A)n Simple_repeat Simple_repeat 1 35 0 411 258 55 55 chr6 81575389 81575571 -100839671 + MIR SINE MIR 15 196 -66 2216 135 41 29 chr6 81575992 81576406 -100838836 + L1MA9 LINE L1 5894 6312 0 521 281 129 24 chr6 81577142 81577352 -100837890 - MIR SINE MIR -19 243 12 589 249 126 56 chr6 81577542 81577811 -100837431 + MLT1D LTR MaLR 7 294 -332 1461 203 108 61 chr6 81577846 81578405 -100836837 - LTR1B LTR ERV1 -278 548 1 1018 173 117 0 chr6 81578406 81578603 -100836639 + MLT1D LTR MaLR 284 503 -2 40 21 0 0 chr6 81578612 81578659 -100836583 + AT_rich Low_complexity Low_complexity 1 47 0 809 264 27 14 chr6 81579502 81579722 -100835520 + MER58A DNA MER1_type 2 224 0 27 29 0 0 chr6 81580176 81580210 -100835032 + AT_rich Low_complexity Low_complexity 1 34 0 52 0 0 0 chr6 81580392 81580444 -100834798 + AT_rich Low_complexity Low_complexity 1 52 0 22 80 0 0 chr6 81580634 81580684 -100834558 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr6 81580883 81580904 -100834338 + AT_rich Low_complexity Low_complexity 1 21 0 253 294 63 28 chr6 81581101 81581356 -100833886 + L1M4 LINE L1 3646 3909 -2237 351 214 143 0 chr6 81581575 81581701 -100833541 - MER103 DNA DNA -5 161 18 244 270 14 14 chr6 81581779 81581853 -100833389 + L1M4 LINE L1 4067 4140 -2006 901 287 46 98 chr6 81582112 81582369 -100832873 + L2 LINE L2 2502 2722 -592 1921 157 27 57 chr6 81582369 81582771 -100832471 + MLT1B LTR MaLR 1 390 0 901 287 46 98 chr6 81582771 81583012 -100832230 + L2 LINE L2 2722 2974 -340 11272 200 31 8 chr6 81583013 81585127 -100830115 + L1MA1 LINE L1 23 2183 -5382 * 13643 166 14 23 chr6 81585115 81585995 -100829247 + L1MA1 LINE L1 3777 4664 -3057 885 116 22 0 chr6 81585995 81586133 -100829109 - L1MA9 LINE L1 0 6312 6172 13643 166 14 23 chr6 81586133 81588522 -100826720 + L1MA1 LINE L1 4664 7003 -718 3130 107 27 0 chr6 81588522 81588963 -100826279 + MLT2A2 LTR ERVL 1 453 0 13643 166 14 23 chr6 81588963 81589669 -100825573 + L1MA1 LINE L1 7003 7714 -7 542 299 163 17 chr6 81589712 81590000 -100825242 + L2 LINE L2 2968 3297 -16 384 299 54 30 chr6 81590024 81590191 -100825051 + L1M4 LINE L1 5517 5687 -434 37 23 0 0 chr6 81590245 81590289 -100824953 + AT_rich Low_complexity Low_complexity 1 44 0 315 264 56 35 chr6 81590319 81590463 -100824779 + L1M4 LINE L1 5665 5811 -373 24 32 0 0 chr6 81591193 81591224 -100824018 + AT_rich Low_complexity Low_complexity 1 31 0 2287 11 0 8 chr6 81591303 81591571 -100823671 - L1PA2 LINE L1 0 6155 5890 180 338 46 73 chr6 81593036 81593187 -100822055 + L2 LINE L2 3124 3270 -2 183 244 0 0 chr6 81593272 81593313 -100821929 - L2 LINE L2 -299 2973 2933 364 335 146 20 chr6 81593782 81594083 -100821159 - L2 LINE L2 -22 3291 2953 252 330 37 28 chr6 81594132 81594241 -100821001 - L2 LINE L2 -1 3312 3203 594 250 60 40 chr6 81594271 81594471 -100820771 - MER63A DNA MER1_type -3 207 4 414 266 139 29 chr6 81594880 81595053 -100820189 + L2 LINE L2 1806 1997 -1317 393 353 128 8 chr6 81595163 81595500 -100819742 + L2 LINE L2 2759 3136 -177 194 150 25 0 chr6 81595510 81595550 -100819692 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 23 33 0 0 chr6 81595598 81595628 -100819614 + AT_rich Low_complexity Low_complexity 1 30 0 189 147 0 0 chr6 81595658 81595692 -100819550 + (TATAA)n Simple_repeat Simple_repeat 1 34 0 363 278 113 9 chr6 81595694 81595809 -100819433 + L2 LINE L2 3186 3312 -1 2464 53 7 3 chr6 81596075 81596377 -100818865 - AluY SINE Alu -8 303 1 204 333 12 24 chr6 81596389 81596473 -100818769 - L2 LINE L2 -4 3309 3227 233 274 0 0 chr6 81596621 81596672 -100818570 + (CA)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr6 81597724 81597752 -100817490 + AT_rich Low_complexity Low_complexity 1 28 0 235 250 0 0 chr6 81598264 81598328 -100816914 - Charlie8 DNA MER1_type -2270 147 84 1000 249 9 0 chr6 81600222 81600443 -100814799 + MER58A DNA MER1_type 1 223 -1 280 333 162 30 chr6 81600508 81600706 -100814536 - MIR SINE MIR -23 239 16 228 288 50 12 chr6 81601299 81601379 -100813863 - MIR3 SINE MIR -7 201 119 4485 103 0 2 chr6 81603914 81604546 -100810696 - L1PA13 LINE L1 -10 6153 5523 376 296 79 31 chr6 81604663 81604965 -100810277 - MLT1H LTR MaLR -13 536 114 2545 34 0 21 chr6 81607200 81607525 -100807717 + L1PA4 LINE L1 5836 6153 -2 245 272 272 29 chr6 81607724 81607897 -100807345 + MIR SINE MIR 23 237 -25 591 272 49 53 chr6 81608196 81608439 -100806803 + MIR SINE MIR 8 249 -13 231 103 0 0 chr6 81608810 81608849 -100806393 + (T)n Simple_repeat Simple_repeat 1 39 0 1310 179 0 4 chr6 81608854 81609083 -100806159 - AluJb SINE Alu 0 312 85 238 370 8 8 chr6 81609189 81609316 -100805926 + L2 LINE L2 2553 2679 -635 5392 131 5 10 chr6 81609332 81610194 -100805048 - L1PA13 LINE L1 0 6163 5307 869 283 77 37 chr6 81610535 81611051 -100804191 - L2 LINE L2 -55 3258 2714 191 254 36 0 chr6 81611113 81611168 -100804074 + L2 LINE L2 2916 2972 -300 575 314 59 56 chr6 81611303 81611695 -100803547 - MLT1L LTR MaLR -4 611 219 4662 122 31 65 chr6 81611788 81612730 -100802512 - L1PA13 LINE L1 0 6163 5254 2005 176 29 12 chr6 81612733 81613149 -100802093 + L1PA13 LINE L1 4824 5246 -900 278 314 38 19 chr6 81613161 81613266 -100801976 + L2 LINE L2 3207 3313 0 2047 143 19 56 chr6 81614205 81614583 -100800659 - THE1B LTR MaLR 0 364 1 2062 137 7 0 chr6 81616072 81616379 -100798863 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr6 81617342 81617373 -100797869 + AT_rich Low_complexity Low_complexity 1 31 0 2202 148 5 16 chr6 81617788 81618167 -100797075 + THE1C LTR MaLR 1 375 0 9785 132 48 6 chr6 81618167 81619683 -100795559 + THE1C-int LTR MaLR 1 1580 0 2504 99 16 16 chr6 81619683 81620058 -100795184 + THE1C LTR MaLR 1 375 0 834 205 92 4 chr6 81621296 81621525 -100793717 - Charlie2 DNA MER1_type -2 2860 2612 14397 157 13 16 chr6 81621534 81622773 -100792469 + L1P3 LINE L1 2 1243 -5218 216 111 0 0 chr6 81622773 81622809 -100792433 + (CAA)n Simple_repeat Simple_repeat 1 36 0 14397 157 13 16 chr6 81622809 81625353 -100789889 + L1P3 LINE L1 1243 3841 -2620 204 230 54 40 chr6 81625383 81625457 -100789785 + L2 LINE L2 3158 3232 -81 485 155 20 20 chr6 81625457 81625657 -100789585 + CT-rich Low_complexity Low_complexity 1 200 0 204 270 16 32 chr6 81625657 81625720 -100789522 + L2 LINE L2 3205 3266 -6 326 259 76 19 chr6 81625720 81625878 -100789364 - Charlie2a DNA MER1_type -1224 1638 1472 1044 240 146 92 chr6 81625994 81626463 -100788779 - Charlie2b DNA MER1_type -2108 674 161 625 173 207 20 chr6 81626463 81626613 -100788629 - MER45A DNA AcHobo 0 178 1 1044 240 146 92 chr6 81626613 81626772 -100788470 - Charlie2b DNA MER1_type -2621 161 12 270 324 0 37 chr6 81627495 81627603 -100787639 + MER5A DNA MER1_type 80 183 -6 1066 237 5 0 chr6 81627624 81627839 -100787403 + MER58A DNA MER1_type 9 224 0 188 67 33 0 chr6 81629289 81629319 -100785923 + (TC)n Simple_repeat Simple_repeat 2 32 0 264 292 67 0 chr6 81629595 81629684 -100785558 + L2 LINE L2 3204 3298 -15 2176 78 0 34 chr6 81629816 81630109 -100785133 - AluY SINE Alu -2 309 27 216 316 40 0 chr6 81630270 81630346 -100784896 + L2 LINE L2 3222 3300 -13 202 336 115 18 chr6 81630663 81630776 -100784466 + L2 LINE L2 2709 2832 -482 22 35 0 0 chr6 81632479 81632508 -100782734 + AT_rich Low_complexity Low_complexity 1 29 0 1569 204 22 10 chr6 81634929 81635242 -100780000 + MER58B DNA MER1_type 25 341 0 21 0 0 0 chr6 81635817 81635838 -100779404 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 81636287 81636322 -100778920 + AT_rich Low_complexity Low_complexity 1 35 0 2414 55 10 0 chr6 81636420 81636711 -100778531 - AluY SINE Alu -15 296 3 414 284 51 28 chr6 81636790 81636966 -100778276 + MIR SINE MIR 64 243 -19 238 354 48 48 chr6 81638488 81638635 -100776607 - L2 LINE L2 -20 3293 3147 238 358 103 34 chr6 81638837 81639303 -100775939 - L2 LINE L2 -445 2869 2372 241 231 92 46 chr6 81639392 81639565 -100775677 - L1ME4a LINE L1 -174 5947 5767 1548 226 219 56 chr6 81640955 81641520 -100773722 + L2 LINE L2 2013 2701 -613 2596 38 0 38 chr6 81641520 81641840 -100773402 - AluY SINE Alu -3 308 1 1548 226 219 56 chr6 81641840 81641930 -100773312 + L2 LINE L2 2701 2775 -539 697 235 65 25 chr6 81642479 81642679 -100772563 - MER46A DNA MER2_type 0 236 29 22 35 0 0 chr6 81643420 81643449 -100771793 + AT_rich Low_complexity Low_complexity 1 29 0 2526 114 14 3 chr6 81643488 81643847 -100771395 + THE1C LTR MaLR 1 363 -12 213 194 0 0 chr6 81644536 81644572 -100770670 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 65 0 0 chr6 81644778 81644824 -100770418 + AT_rich Low_complexity Low_complexity 1 46 0 829 126 33 7 chr6 81646605 81646756 -100768486 - L1MB2 LINE L1 -12 6159 6005 290 288 268 20 chr6 81647339 81647537 -100767705 + MIR SINE MIR 14 260 -2 207 194 0 0 chr6 81647809 81647845 -100767397 + CT-rich Low_complexity Low_complexity 5 40 0 255 224 0 0 chr6 81648456 81648532 -100766710 + (TA)n Simple_repeat Simple_repeat 2 77 0 718 234 13 48 chr6 81650377 81650604 -100764638 - MER20 DNA MER1_type 0 219 1 185 359 11 22 chr6 81651307 81651399 -100763843 - MER5A DNA MER1_type -8 181 91 405 0 0 0 chr6 81651428 81651473 -100763769 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 325 286 54 71 chr6 81652101 81652325 -100762917 - L1ME4a LINE L1 -650 5512 5293 240 147 59 29 chr6 81652591 81652659 -100762583 - L1ME4a LINE L1 -1315 4831 4762 253 103 0 64 chr6 81652669 81652747 -100762495 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 287 122 0 37 chr6 81652846 81652913 -100762329 - MLT2C1 LTR ERVL -2 395 357 233 159 16 0 chr6 81652890 81652953 -100762289 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 * 1423 246 0 52 chr6 81652964 81652982 -100762260 - MLT2C1 LTR ERVL -48 349 332 3270 89 51 8 chr6 81652982 81653474 -100761768 - MER75 DNA T2_type 0 514 2 1423 246 0 52 chr6 81653474 81653749 -100761493 - MLT2C1 LTR ERVL -65 332 76 2104 125 0 3 chr6 81653749 81653769 -100761473 - AluY SINE Alu -6 305 286 195 0 39 0 chr6 81653769 81653795 -100761447 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 2104 125 0 3 chr6 81653795 81654078 -100761164 - AluY SINE Alu -25 286 3 1423 246 0 52 chr6 81654078 81654149 -100761093 - MLT2C1 LTR ERVL -321 76 3 4828 158 47 26 chr6 81654149 81655381 -100759861 + L1PA16 LINE L1 4912 6157 -9 24 0 0 0 chr6 81655381 81655405 -100759837 + AT_rich Low_complexity Low_complexity 1 24 0 598 14 0 0 chr6 81655635 81655709 -100759533 - L1PA3 LINE L1 0 6155 6082 * 7631 20 0 1 chr6 81655696 81656770 -100758472 + L1PA3 LINE L1 5069 6143 -12 22 56 0 0 chr6 81656867 81656903 -100758339 + AT_rich Low_complexity Low_complexity 1 36 0 2437 243 51 73 chr6 81656910 81657871 -100757371 + L1MDa LINE L1 48 1121 -5419 1911 186 8 8 chr6 81657873 81658254 -100756988 + L1MB1 LINE L1 5788 6168 0 830 150 0 0 chr6 81658287 81658414 -100756828 + FRAM SINE Alu 41 167 -9 515 234 66 0 chr6 81658414 81658581 -100756661 + L1MDa LINE L1 1141 1318 -5225 * 2382 169 12 28 chr6 81658573 81658999 -100756243 + L1PA13 LINE L1 148 566 -6221 322 175 0 228 chr6 81659043 81659157 -100756085 + L1PA13 LINE L1 569 656 -6131 4243 147 15 0 chr6 81659198 81659885 -100755357 + L1PA13 LINE L1 5456 6152 -11 4025 196 74 16 chr6 81659887 81660876 -100754366 + L1MDa LINE L1 1295 2340 -4200 632 287 67 0 chr6 81660885 81661108 -100754134 + L1MD2 LINE L1 5904 6141 -218 464 282 13 19 chr6 81661110 81661266 -100753976 + L1MD2 LINE L1 6195 6349 -10 22 80 0 0 chr6 81662032 81662082 -100753160 + AT_rich Low_complexity Low_complexity 1 50 0 270 224 26 13 chr6 81662946 81663022 -100752220 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 599 293 27 44 chr6 81663060 81663285 -100751957 - MIR SINE MIR -16 246 26 340 338 88 0 chr6 81663802 81663950 -100751292 - MIR3 SINE MIR -11 197 37 474 327 132 25 chr6 81664079 81664473 -100750769 - MLT1K LTR MaLR -141 447 12 1299 198 4 33 chr6 81664720 81664993 -100750249 - AluJo SINE Alu -47 265 1 291 316 57 23 chr6 81665234 81665411 -100749831 + L2 LINE L2 3079 3261 -52 4209 84 14 2 chr6 81665429 81666014 -100749228 - L1PA13 LINE L1 -4 6159 5568 1592 30 5 0 chr6 81666014 81666211 -100749031 - L1P LINE L1 -3221 2925 2728 974 44 44 15 chr6 81666211 81666345 -100748897 + L1PA5 LINE L1 6015 6154 0 556 92 0 0 chr6 81666345 81666421 -100748821 + L1P4 LINE L1 5490 5565 -598 * 855 105 23 0 chr6 81666413 81666546 -100748696 - L1M1 LINE L1 -756 5546 5411 433 339 0 0 chr6 81666698 81666813 -100748429 + L2 LINE L2 3186 3300 -13 235 381 81 0 chr6 81666867 81667027 -100748215 + MIR SINE MIR 48 220 -42 23 0 0 0 chr6 81667125 81667148 -100748094 + AT_rich Low_complexity Low_complexity 1 23 0 458 149 0 0 chr6 81667571 81667638 -100747604 - AluSg/x SINE Alu -25 284 218 710 231 12 60 chr6 81668508 81668759 -100746483 + HAL1b LINE L1 226 464 -884 1778 111 12 0 chr6 81668819 81669071 -100746171 - AluSx SINE Alu -25 287 33 418 294 37 0 chr6 81669220 81669329 -100745913 + L2 LINE L2 3189 3301 -12 420 206 37 52 chr6 81669705 81669841 -100745401 + HAL1b LINE L1 514 647 -701 388 343 119 5 chr6 81669867 81670086 -100745156 + HAL1b LINE L1 434 677 -671 682 268 151 15 chr6 81670091 81670561 -100744681 + HAL1b LINE L1 727 1260 -88 23 0 0 0 chr6 81671249 81671272 -100743970 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr6 81671699 81671737 -100743505 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr6 81671822 81671844 -100743398 + AT_rich Low_complexity Low_complexity 1 22 0 277 315 154 1 chr6 81672077 81672314 -100742928 + L2 LINE L2 2755 3027 -245 217 326 23 47 chr6 81672429 81672558 -100742684 + L2 LINE L2 3188 3313 0 386 105 18 0 chr6 81672573 81672630 -100742612 - MER58 DNA MER1_type 0 2420 2363 848 60 0 9 chr6 81672639 81672755 -100742487 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 340 215 54 65 chr6 81672760 81672853 -100742389 - MER58 DNA MER1_type -2327 93 2 26 109 0 0 chr6 81673037 81673147 -100742095 + AT_rich Low_complexity Low_complexity 1 110 0 285 354 94 26 chr6 81673848 81674040 -100741202 - MIR SINE MIR -18 244 40 200 262 0 33 chr6 81674052 81674113 -100741129 + A-rich Low_complexity Low_complexity 3 61 0 21 36 0 0 chr6 81674297 81674325 -100740917 + AT_rich Low_complexity Low_complexity 1 28 0 7077 31 0 6 chr6 81675259 81676110 -100739132 - L1PA3 LINE L1 -1233 4913 4068 7449 25 0 25 chr6 81676110 81677380 -100737862 + L1PA3 LINE L1 4909 6155 0 1419 284 180 43 chr6 81678084 81678511 -100736731 - L2 LINE L2 -2270 1044 677 2161 108 0 3 chr6 81678511 81678807 -100736435 - AluY SINE Alu -16 295 1 1419 284 180 43 chr6 81678807 81679288 -100735954 - L2 LINE L2 -2637 677 11 330 291 196 0 chr6 81679475 81679633 -100735609 + MIR SINE MIR 74 262 0 25 90 0 0 chr6 81680288 81680355 -100734887 + AT_rich Low_complexity Low_complexity 1 67 0 234 323 115 21 chr6 81681346 81681538 -100733704 + MIR SINE MIR 53 262 0 374 294 37 77 chr6 81682008 81682307 -100732935 + MER46C DNA MER2_type 1 287 -51 666 133 140 17 chr6 81682323 81682513 -100732729 - L1MA6 LINE L1 -23 6277 6065 32 75 0 0 chr6 81682584 81682651 -100732591 + AT_rich Low_complexity Low_complexity 1 67 0 251 263 32 83 chr6 81683238 81683394 -100731848 - HAL1 LINE L1 -6 2501 2354 266 231 26 0 chr6 81683414 81683492 -100731750 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 269 232 0 24 chr6 81683552 81683634 -100731608 - HAL1 LINE L1 -389 2118 2039 442 284 161 9 chr6 81683700 81683918 -100731324 - HAL1 LINE L1 -716 1791 1541 325 261 54 45 chr6 81683927 81684038 -100731204 + MER5A DNA MER1_type 1 112 -77 407 249 44 137 chr6 81684137 81684199 -100731043 - HAL1 LINE L1 -1045 1462 1396 1830 152 24 0 chr6 81684199 81684496 -100730746 + AluSx SINE Alu 8 311 -1 407 249 44 137 chr6 81684496 81684907 -100730335 - HAL1 LINE L1 -1111 1396 1033 376 257 83 21 chr6 81684910 81685054 -100730188 - MLT1J LTR MaLR -344 167 15 6123 95 16 2 chr6 81685919 81687061 -100728181 + L1PA10 LINE L1 5010 6163 -5 30 0 0 0 chr6 81687061 81687091 -100728151 + AT_rich Low_complexity Low_complexity 1 30 0 238 123 0 102 chr6 81687297 81687365 -100727877 - L1MA7 LINE L1 -57 6234 6177 22 0 0 0 chr6 81688969 81688991 -100726251 + AT_rich Low_complexity Low_complexity 1 22 0 4585 199 38 10 chr6 81689583 81691418 -100723824 - L1MB2 LINE L1 -2 6169 4285 4941 222 33 148 chr6 81691768 81694095 -100721147 + L1M2 LINE L1 1 2421 -4788 4806 156 10 8 chr6 81694098 81695408 -100719834 + L1P4 LINE L1 4439 5746 -415 2476 250 37 7 chr6 81695408 81696171 -100719071 + L1M2 LINE L1 3489 4274 -2934 * 4635 177 50 33 chr6 81696162 81697951 -100717291 - L1MA4 LINE L1 0 6300 4480 541 276 35 30 chr6 81698089 81698288 -100716954 + MLT1K LTR MaLR 389 588 0 181 255 98 0 chr6 81698682 81698733 -100716509 - L2 LINE L2 -92 3221 3166 409 257 297 0 chr6 81699305 81699480 -100715762 - MIR SINE MIR -22 240 14 194 0 39 0 chr6 81699602 81699628 -100715614 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 321 315 27 68 chr6 81700441 81700587 -100714655 + MIR SINE MIR 58 197 -65 293 274 137 10 chr6 81700679 81700781 -100714461 + MER91B DNA MER1_type 16 130 -60 202 268 14 42 chr6 81700809 81700880 -100714362 + MER91A DNA MER1_type 128 196 0 315 348 135 42 chr6 81700880 81701443 -100713799 + L2 LINE L2 2638 3267 -5 234 365 81 14 chr6 81701446 81701594 -100713648 + MIR3 SINE MIR 44 201 -7 23 68 0 0 chr6 81701792 81701836 -100713406 + AT_rich Low_complexity Low_complexity 1 44 0 579 149 12 155 chr6 81702004 81702165 -100713077 + MER2 DNA MER2_type 8 145 -200 307 120 0 0 chr6 81702172 81702222 -100713020 - MER2 DNA MER2_type -147 198 149 271 176 0 0 chr6 81702229 81702280 -100712962 + MER2 DNA MER2_type 160 210 -135 27 0 0 0 chr6 81702591 81702618 -100712624 + AT_rich Low_complexity Low_complexity 1 27 0 299 368 37 18 chr6 81704395 81704558 -100710684 + MER5A DNA MER1_type 24 189 0 466 288 174 39 chr6 81705808 81706141 -100709101 + L2 LINE L2 999 1376 -1938 41482 47 1 1 chr6 81706241 81712341 -100702901 + L1PA4 LINE L1 7 6111 -44 250 304 74 14 chr6 81763054 81763315 -100651927 + L1P LINE L1 4811 5080 -1066 640 309 35 52 chr6 81763437 81763898 -100651344 + L1MC/D LINE L1 5352 5801 -369 3614 180 106 97 chr6 81764021 81764531 -100650711 + L1MC3 LINE L1 6581 7085 -700 293 276 11 11 chr6 81764531 81764618 -100650624 + MLT1F1 LTR MaLR 39 125 -442 3614 180 106 97 chr6 81764618 81765177 -100650065 + L1MC3 LINE L1 7085 7747 -38 2176 90 3 10 chr6 81765179 81765478 -100649764 + AluSq SINE Alu 1 297 -16 24 53 0 0 chr6 81765679 81765717 -100649525 + AT_rich Low_complexity Low_complexity 1 38 0 1622 241 17 29 chr6 81766862 81767181 -100648061 - L1ME2 LINE L1 -10 6154 5841 1777 253 138 17 chr6 81767181 81767825 -100647417 + MER72 LTR ERV1 1 722 0 1622 241 17 29 chr6 81767825 81767987 -100647255 - L1ME2 LINE L1 -323 5841 5679 1589 217 22 46 chr6 81767982 81768490 -100646752 + L1ME LINE L1 5170 5671 -495 * 1193 239 0 4 chr6 81768703 81768937 -100646305 - MER8 DNA MER2_type -1 238 6 385 271 42 8 chr6 81769270 81769388 -100645854 + MIR SINE MIR 131 252 -10 203 245 0 0 chr6 81770614 81770663 -100644579 + (CATTT)n Simple_repeat Simple_repeat 4 52 0 489 285 80 30 chr6 81771061 81771261 -100643981 + MIR SINE MIR 19 228 -34 265 188 0 0 chr6 81771425 81771473 -100643769 - L2 LINE L2 -2 3311 3264 682 276 134 29 chr6 81773751 81774131 -100641111 + LTR16A LTR ERVL 31 450 0 2123 110 3 0 chr6 81775718 81776020 -100639222 - AluSp SINE Alu 0 303 1 259 328 121 51 chr6 81776302 81776558 -100638684 + Charlie7 DNA MER1_type 4 277 -2335 1984 176 5 21 chr6 81776585 81776966 -100638276 - THE1C LTR MaLR 0 375 1 1123 258 47 11 chr6 81776969 81777333 -100637909 + Charlie7 DNA MER1_type 345 721 -1891 203 358 80 31 chr6 81777399 81777561 -100637681 - L2 LINE L2 -2 3311 3142 22 0 0 0 chr6 81777570 81777592 -100637650 + AT_rich Low_complexity Low_complexity 1 22 0 184 303 211 0 chr6 81778008 81778084 -100637158 + L2 LINE L2 3154 3245 -27 3927 170 35 43 chr6 81779226 81780007 -100635235 + MER52A LTR ERV1 982 1755 0 390 253 89 58 chr6 81780760 81780950 -100634292 + MIR SINE MIR 65 260 -2 225 264 19 0 chr6 81781308 81781361 -100633881 - MIR SINE MIR -111 151 98 23 0 0 0 chr6 81781718 81781741 -100633501 + AT_rich Low_complexity Low_complexity 1 23 0 797 83 0 17 chr6 81782913 81783033 -100632209 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 2524 133 41 5 chr6 81783451 81783864 -100631378 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr6 81784128 81784150 -100631092 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 81785480 81785502 -100629740 + AT_rich Low_complexity Low_complexity 1 22 0 2386 77 0 3 chr6 81786334 81786645 -100628597 + AluY SINE Alu 1 310 -1 193 340 62 21 chr6 81786969 81787066 -100628176 + MER5A DNA MER1_type 65 165 -24 21 0 0 0 chr6 81787582 81787603 -100627639 + AT_rich Low_complexity Low_complexity 1 21 0 732 281 109 41 chr6 81788797 81789210 -100626032 + MLT1F LTR MaLR 102 542 0 199 400 0 0 chr6 81789559 81789619 -100625623 + MIR SINE MIR 46 105 -157 208 347 42 21 chr6 81790064 81790208 -100625034 - MER5A DNA MER1_type 0 189 43 2657 99 5 3 chr6 81790208 81790582 -100624660 - THE1C LTR MaLR 0 375 1 180 0 0 0 chr6 81791041 81791061 -100624181 + (CA)n Simple_repeat Simple_repeat 1 20 0 331 148 0 0 chr6 81791102 81791156 -100624086 + MLT2B1 LTR ERVL 467 520 0 * 576 252 98 56 chr6 81791156 81791386 -100623856 - HsTC2 DNA Tc2 -133 1765 1547 2165 100 7 0 chr6 81791386 81791686 -100623556 + AluY SINE Alu 1 302 -9 576 252 98 56 chr6 81791686 81791774 -100623468 - HsTC2 DNA Tc2 -351 1547 1257 535 267 0 0 chr6 81791785 81791905 -100623337 - HsTC2 DNA Tc2 -1772 126 7 246 81 0 0 chr6 81791946 81791983 -100623259 + (ATG)n Simple_repeat Simple_repeat 3 39 0 23 0 0 0 chr6 81795313 81795336 -100619906 + AT_rich Low_complexity Low_complexity 1 23 0 4651 174 55 13 chr6 81795536 81795648 -100619594 - L1MA9 LINE L1 -37 6275 6169 507 33 0 0 chr6 81795648 81795709 -100619533 + (TG)n Simple_repeat Simple_repeat 2 62 0 4651 174 55 13 chr6 81795709 81796535 -100618707 - L1MA9 LINE L1 -143 6169 5293 212 0 36 0 chr6 81796535 81796563 -100618679 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 4651 174 55 13 chr6 81796563 81796595 -100618647 - L1MA9 LINE L1 -1019 5293 5264 7269 207 22 16 chr6 81796609 81798286 -100616956 - L1MA9 LINE L1 -1013 5133 3446 34 42 0 0 chr6 81798487 81798535 -100616707 + AT_rich Low_complexity Low_complexity 1 48 0 284 274 171 48 chr6 81799196 81799342 -100615900 + MIR SINE MIR 31 194 -68 231 226 0 28 chr6 81799393 81799499 -100615743 + (TAG)n Simple_repeat Simple_repeat 2 104 0 22 0 0 0 chr6 81800484 81800506 -100614736 + AT_rich Low_complexity Low_complexity 1 22 0 579 252 164 30 chr6 81802118 81802380 -100612862 - MER5C DNA MER1_type -23 301 5 27 49 0 0 chr6 81802483 81802524 -100612718 + AT_rich Low_complexity Low_complexity 1 41 0 5272 105 19 0 chr6 81802553 81804225 -100611017 - L1PA13 LINE L1 -4 6159 4461 423 257 111 66 chr6 81804530 81804756 -100610486 + MLT1J LTR MaLR 226 461 -50 16405 173 26 29 chr6 81804930 81809532 -100605710 + L1M1 LINE L1 13 4617 -2948 1911 161 7 0 chr6 81809532 81809842 -100605400 - AluSx SINE Alu 0 312 1 16405 173 26 29 chr6 81809842 81809913 -100605329 + L1M1 LINE L1 4617 4687 -2878 1670 228 5 2 chr6 81809914 81810336 -100604906 + L1P LINE L1 2789 3211 -2935 16760 76 9 19 chr6 81810336 81813494 -100601748 - L1PA6 LINE L1 -1 6153 3020 12319 109 11 45 chr6 81813498 81814710 -100600532 + L1PB1 LINE L1 2082 3199 -4366 2473 47 0 0 chr6 81814710 81815010 -100600232 + L1PA5 LINE L1 5844 6143 -11 12319 109 11 45 chr6 81815010 81815813 -100599429 + L1PB1 LINE L1 3199 4028 -3537 3587 178 16 22 chr6 81815831 81816566 -100598676 + L1PB1 LINE L1 4648 5378 -2187 251 274 45 78 chr6 81817148 81817327 -100597915 - L1MC4 LINE L1 -369 7673 7501 395 226 19 9 chr6 81817527 81817633 -100597609 + L1MC4 LINE L1 6936 7042 -1000 581 314 122 53 chr6 81817781 81818446 -100596796 + L1ME LINE L1 396 1106 -5310 1805 212 28 63 chr6 81818463 81818973 -100596269 + L1PBa LINE L1 6 497 -6366 * 5862 145 6 27 chr6 81818970 81820377 -100594865 + L1PB1 LINE L1 6195 7568 -2 1199 283 79 35 chr6 81820418 81820748 -100594494 + L1ME LINE L1 1113 1427 -5156 2571 37 3 0 chr6 81820748 81821044 -100594198 - AluY SINE Alu -11 300 4 1199 283 79 35 chr6 81821044 81821594 -100593648 + L1ME LINE L1 1427 2082 -4501 342 229 74 0 chr6 81821631 81821753 -100593489 + L1MC4 LINE L1 7689 7819 -223 247 218 0 0 chr6 81821775 81821830 -100593412 + L1ME LINE L1 2006 2060 -4366 390 139 0 0 chr6 81821835 81821907 -100593335 + (TA)n Simple_repeat Simple_repeat 2 73 0 1139 350 150 13 chr6 81822213 81823088 -100592154 - L2 LINE L2 -527 2787 1793 221 229 29 43 chr6 81823109 81823179 -100592063 + L2 LINE L2 2752 2820 -494 808 185 80 12 chr6 81823179 81823341 -100591901 + THE1C LTR MaLR 1 173 -202 1169 61 0 14 chr6 81823354 81823495 -100591747 + AluY SINE Alu 1 141 -170 2694 24 0 0 chr6 81823495 81823792 -100591450 + AluYa5 SINE Alu 1 297 -14 855 143 28 60 chr6 81823807 81823989 -100591253 + THE1C LTR MaLR 200 375 0 9358 126 27 50 chr6 81823992 81824927 -100590315 + THE1C-int LTR MaLR 4 887 -693 2103 130 10 0 chr6 81824927 81825228 -100590014 + AluSx SINE Alu 1 304 -8 9358 126 27 50 chr6 81825228 81825900 -100589342 + THE1C-int LTR MaLR 887 1573 -7 965 158 55 0 chr6 81825905 81826069 -100589173 + THE1C LTR MaLR 1 173 -202 519 345 120 31 chr6 81826244 81826601 -100588641 + L2 LINE L2 2921 3309 -4 565 255 83 103 chr6 81826648 81827358 -100587884 + HAL1b LINE L1 526 1221 -127 2072 137 0 3 chr6 81827742 81828048 -100587194 - AluSx SINE Alu -7 305 1 1441 203 3 43 chr6 81828181 81828486 -100586756 + AluJo SINE Alu 1 293 -19 6171 84 17 1 chr6 81828491 81829375 -100585867 - L1P LINE L1 -793 5353 4456 2702 76 5 5 chr6 81829375 81829744 -100585498 + L1PA7 LINE L1 5784 6153 -1 341 349 84 40 chr6 81830426 81830966 -100584276 + L2 LINE L2 2712 3239 -74 3811 165 64 22 chr6 81831265 81832004 -100583238 + Tigger7 DNA MER2_type 1 770 -1717 1729 155 45 59 chr6 81832004 81832379 -100582863 + Tigger7 DNA MER2_type 2218 2587 0 231 221 132 0 chr6 81832585 81832653 -100582589 + L1MC4 LINE L1 6614 6690 -1352 1763 139 33 15 chr6 81832746 81833020 -100582222 - AluSx SINE Alu -25 287 9 23 54 0 0 chr6 81833106 81833143 -100582099 + AT_rich Low_complexity Low_complexity 1 37 0 195 306 14 28 chr6 81834230 81834302 -100580940 + MER5A DNA MER1_type 89 159 -30 513 161 42 0 chr6 81834601 81834719 -100580523 + GA-rich Low_complexity Low_complexity 2 124 0 761 178 7 0 chr6 81835040 81835175 -100580067 + L1M4 LINE L1 5 140 -6402 532 172 0 16 chr6 81835203 81835331 -100579911 + GA-rich Low_complexity Low_complexity 2 127 0 326 198 9 26 chr6 81835450 81835566 -100579676 + GA-rich Low_complexity Low_complexity 2 115 0 1955 244 45 91 chr6 81835566 81836292 -100578950 + L1M4 LINE L1 153 845 -5697 958 257 34 14 chr6 81836312 81836728 -100578514 + L1M4 LINE L1 2185 2608 -4038 5991 100 11 0 chr6 81836728 81837822 -100577420 + L1PA13 LINE L1 5052 6159 -4 2886 207 123 27 chr6 81838298 81839047 -100576195 + L1M2a LINE L1 6 826 -6342 471 247 5 129 chr6 81839073 81839275 -100575967 + L1MA5 LINE L1 579 896 -6272 1972 224 101 70 chr6 81839365 81840125 -100575117 - LTR1B LTR ERV1 -39 981 1 429 298 16 16 chr6 81840221 81840345 -100574897 + L1MA5 LINE L1 760 883 -6285 5663 216 16 14 chr6 81840381 81842441 -100572801 + L1MA5 LINE L1 1595 3671 -3496 2240 111 0 25 chr6 81842441 81842756 -100572486 - AluSq SINE Alu -6 307 1 5663 216 16 14 chr6 81842756 81842901 -100572341 + L1MA5 LINE L1 3671 3814 -3353 1373 233 0 11 chr6 81842903 81843174 -100572068 - AluSq SINE Alu -45 268 1 680 202 0 5 chr6 81843176 81843325 -100571917 + L1MA5 LINE L1 3800 3942 -3225 5725 225 83 11 chr6 81843538 81846679 -100568563 + L1MA5 LINE L1 3951 7319 -2 519 338 31 14 chr6 81846686 81846973 -100568269 + HAL1b LINE L1 237 528 -820 376 330 98 17 chr6 81847568 81847977 -100567265 + L1M4 LINE L1 2110 2551 -3595 269 275 28 37 chr6 81848068 81848177 -100567065 + L1M4 LINE L1 2675 2782 -3364 4633 55 19 0 chr6 81848202 81848788 -100566454 - L1PA5 LINE L1 -5 6149 5553 261 139 0 0 chr6 81848788 81848831 -100566411 + (GAAAA)n Simple_repeat Simple_repeat 4 46 0 2548 40 0 0 chr6 81849506 81849804 -100565438 + AluY SINE Alu 3 300 -11 955 227 83 7 chr6 81849852 81850129 -100565113 - L1MCa LINE L1 -3530 3034 2737 355 295 31 48 chr6 81850129 81850443 -100564799 - L1MCa LINE L1 -5776 320 2 2349 60 0 20 chr6 81850894 81851195 -100564047 + AluY SINE Alu 5 299 -12 183 308 64 13 chr6 81851204 81851282 -100563960 - MIR3 SINE MIR -27 181 100 2530 47 0 3 chr6 81851721 81852021 -100563221 - AluY SINE Alu -12 299 1 26 30 0 0 chr6 81852245 81852278 -100562964 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr6 81852793 81852820 -100562422 + AT_rich Low_complexity Low_complexity 1 27 0 209 220 0 34 chr6 81854197 81854256 -100560986 + (CATA)n Simple_repeat Simple_repeat 3 59 0 2221 135 0 0 chr6 81854261 81854573 -100560669 + AluSx SINE Alu 1 312 0 2564 109 3 8 chr6 81854976 81855342 -100559900 - THE1B LTR MaLR 0 364 1 387 71 0 0 chr6 81855452 81855508 -100559734 - L1PA7 LINE L1 0 6154 6099 2685 78 6 0 chr6 81855508 81855865 -100559377 + L1PA7 LINE L1 5690 6048 -106 845 170 219 0 chr6 81856053 81856277 -100558965 - L1MA5 LINE L1 0 6300 6028 327 256 0 0 chr6 81856273 81856355 -100558887 + L1MD3 LINE L1 5709 5790 -2018 * 354 240 82 58 chr6 81856566 81856908 -100558334 - L1 LINE L1 -2591 3555 3206 351 277 0 0 chr6 81856949 81857043 -100558199 - L1 LINE L1 -2931 3215 3122 2237 244 70 84 chr6 81857104 81857427 -100557815 + L1MD3 LINE L1 6818 7144 -851 375 222 12 0 chr6 81857427 81857508 -100557734 + MLT1F1 LTR MaLR 36 117 -450 2237 244 70 84 chr6 81857508 81858063 -100557179 + L1MD3 LINE L1 7144 7810 -185 2240 77 3 43 chr6 81858063 81858387 -100556855 + AluY SINE Alu 1 311 0 2237 244 70 84 chr6 81858387 81858571 -100556671 + L1MD3 LINE L1 7810 7995 0 27 0 0 0 chr6 81858674 81858701 -100556541 + AT_rich Low_complexity Low_complexity 1 27 0 686 132 70 0 chr6 81859038 81859167 -100556075 - L1PA15 LINE L1 -3 6162 6025 291 254 39 54 chr6 81859684 81859814 -100555428 - MER112 DNA MER1_type -1 259 132 5899 46 18 4 chr6 81859931 81860998 -100554244 + L1P2 LINE L1 4642 5725 -429 21 0 0 0 chr6 81861006 81861027 -100554215 + AT_rich Low_complexity Low_complexity 1 21 0 249 83 0 0 chr6 81861173 81861209 -100554033 + (C)n Simple_repeat Simple_repeat 1 36 0 2324 100 10 0 chr6 81861348 81861658 -100553584 + AluSq SINE Alu 1 313 0 29 0 0 0 chr6 81862392 81862421 -100552821 + AT_rich Low_complexity Low_complexity 1 29 0 255 217 0 0 chr6 81863247 81863307 -100551935 + (TATG)n Simple_repeat Simple_repeat 2 61 0 207 280 108 11 chr6 81863416 81863509 -100551733 - MIR SINE MIR -14 248 147 2385 160 39 10 chr6 81863528 81863941 -100551301 + MSTA LTR MaLR 4 428 0 4525 170 10 28 chr6 81863941 81864772 -100550470 + MSTA-int LTR MaLR 1 816 -835 8931 234 49 28 chr6 81865777 81866175 -100549067 - L1MB7 LINE L1 -20 6662 6274 237 33 0 0 chr6 81866175 81866205 -100549037 + (TA)n Simple_repeat Simple_repeat 1 30 0 8931 234 49 28 chr6 81866205 81870046 -100545196 - L1MB7 LINE L1 -408 6274 2326 263 208 0 65 chr6 81870042 81870119 -100545123 - L1MB7 LINE L1 -5150 1392 1321 * 323 145 16 0 chr6 81870717 81870779 -100544463 - L1MC1 LINE L1 -1 6332 6270 1251 194 56 7 chr6 81870781 81871065 -100544177 - L1MC2 LINE L1 -193 6151 5854 3103 146 15 15 chr6 81871187 81871735 -100543507 - L1MC2 LINE L1 -463 5870 5323 2200 173 27 5 chr6 81871808 81872218 -100543024 + L1PA16 LINE L1 5730 6148 -18 205 71 95 0 chr6 81872304 81872346 -100542896 + T-rich Low_complexity Low_complexity 5 50 0 493 133 56 0 chr6 81872404 81872494 -100542748 - MER53 DNA DNA 0 189 95 23 68 0 0 chr6 81872513 81872557 -100542685 + AT_rich Low_complexity Low_complexity 1 44 0 234 158 0 0 chr6 81874441 81874479 -100540763 - MER53 DNA DNA -151 38 1 189 0 0 0 chr6 81874675 81874696 -100540546 + (TTTTTG)n Simple_repeat Simple_repeat 1 21 0 231 36 0 0 chr6 81874955 81874983 -100540259 + (CA)n Simple_repeat Simple_repeat 2 29 0 731 276 28 21 chr6 81876253 81876536 -100538706 + L1ME LINE L1 5490 5774 -347 495 306 65 22 chr6 81876905 81877134 -100538108 + MLT1L LTR MaLR 200 438 -177 1328 179 75 70 chr6 81877143 81877528 -100537714 - MLT1B LTR MaLR 0 390 4 1167 191 127 78 chr6 81880067 81880438 -100534804 - MLT1B LTR MaLR -1 389 1 1861 138 0 14 chr6 81880737 81881012 -100534230 + AluSx SINE Alu 26 296 -16 22 0 0 0 chr6 81881997 81882019 -100533223 + AT_rich Low_complexity Low_complexity 1 22 0 2163 117 0 0 chr6 81883265 81883565 -100531677 - AluY SINE Alu -11 300 1 1815 164 3 22 chr6 81883713 81884031 -100531211 - AluSx SINE Alu 0 312 1 2198 133 0 0 chr6 81884525 81884834 -100530408 - AluY SINE Alu -2 309 1 6936 55 1 2 chr6 81885120 81885997 -100529245 + L1PA5 LINE L1 5279 6154 0 2244 107 3 0 chr6 81886224 81886533 -100528709 + AluY SINE Alu 1 310 -1 1616 266 53 17 chr6 81887384 81887914 -100527328 - MER68 LTR ERV1 -13 549 1 224 100 25 0 chr6 81889575 81889615 -100525627 + (TA)n Simple_repeat Simple_repeat 1 41 0 333 0 0 0 chr6 81889684 81889721 -100525521 + (CA)n Simple_repeat Simple_repeat 1 37 0 686 250 12 17 chr6 81890498 81890670 -100524572 - MLT1F1 LTR MaLR 0 567 397 244 358 18 28 chr6 81890707 81890798 -100524444 - MLT1F1 LTR MaLR -277 313 224 357 135 96 99 chr6 81890798 81890927 -100524315 - MLT1G1 LTR MaLR -1 594 316 1220 291 58 23 chr6 81890957 81891352 -100523890 - MLT1G1 LTR MaLR -186 409 1 758 277 80 0 chr6 81891386 81891675 -100523567 - MER46C DNA MER2_type -19 319 8 194 0 0 37 chr6 81891797 81891824 -100523418 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2269 45 42 7 chr6 81891828 81892114 -100523128 - AluYa5 SINE Alu -15 296 1 22 56 0 0 chr6 81892447 81892483 -100522759 + AT_rich Low_complexity Low_complexity 1 36 0 224 390 57 0 chr6 81892802 81892907 -100522335 - MIR3 SINE MIR -7 201 91 2553 54 0 0 chr6 81893245 81893540 -100521702 + AluY SINE Alu 1 295 -16 24 53 0 0 chr6 81893548 81893586 -100521656 + AT_rich Low_complexity Low_complexity 1 38 0 232 367 136 36 chr6 81894769 81895159 -100520083 - L2 LINE L2 -20 3252 2824 2527 85 38 0 chr6 81895562 81895904 -100519338 + THE1A LTR MaLR 1 355 0 973 193 18 45 chr6 81896258 81896481 -100518761 - MER20 DNA MER1_type -1 218 2 200 280 0 27 chr6 81896704 81896779 -100518463 + T-rich Low_complexity Low_complexity 4 76 0 2467 65 0 0 chr6 81898401 81898707 -100516535 - AluY SINE Alu -5 306 1 268 200 100 47 chr6 81899151 81899321 -100515921 - L1MC/D LINE L1 -2339 5469 5291 29 47 0 0 chr6 81899573 81899616 -100515626 + AT_rich Low_complexity Low_complexity 1 43 0 335 211 33 89 chr6 81899809 81899899 -100515343 - L2 LINE L2 0 3313 3229 868 309 172 12 chr6 81899961 81900709 -100514533 - L2 LINE L2 -81 3232 2359 360 274 44 9 chr6 81900782 81900895 -100514347 + MLT1I LTR MaLR 11 127 -282 843 40 0 0 chr6 81900906 81901007 -100514235 - L1PA4 LINE L1 -283 5872 5772 268 25 0 0 chr6 81901006 81901046 -100514196 + L1PA2 LINE L1 6116 6155 0 * 243 287 93 9 chr6 81901078 81901186 -100514056 + MLT1I LTR MaLR 244 360 -49 316 232 53 121 chr6 81902344 81902534 -100512708 + MLT1I-int LTR MaLR 1028 1204 -167 895 268 103 24 chr6 81902646 81903023 -100512219 + MLT1I LTR MaLR 3 409 0 1142 226 27 15 chr6 81904658 81904919 -100510323 + MLT1A1 LTR MaLR 102 365 0 590 317 184 17 chr6 81906687 81907106 -100508136 + L2 LINE L2 2194 2682 -632 42945 49 3 1 chr6 81907116 81913258 -100501984 - L1PA4 LINE L1 0 6155 1 191 174 0 21 chr6 81913565 81913602 -100501640 + L2 LINE L2 3235 3311 -2 225 313 204 14 chr6 81913640 81913787 -100501455 - MIR3 SINE MIR -26 182 8 222 91 0 0 chr6 81914346 81914379 -100500863 + (T)n Simple_repeat Simple_repeat 1 33 0 22 35 0 0 chr6 81914597 81914626 -100500616 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr6 81914832 81914864 -100500378 + AT_rich Low_complexity Low_complexity 1 32 0 234 152 87 0 chr6 81916756 81916802 -100498440 + MER5A DNA MER1_type 1 50 -139 273 403 63 14 chr6 81916840 81917061 -100498181 - L2 LINE L2 -609 2705 2474 567 263 117 0 chr6 81917094 81917273 -100497969 + MIR SINE MIR 50 249 -13 180 152 0 0 chr6 81917321 81917354 -100497888 + GA-rich Low_complexity Low_complexity 3 35 0 13225 190 59 28 chr6 81917474 81917943 -100497299 - L1MA4 LINE L1 -6 6476 6023 321 89 0 0 chr6 81917943 81917988 -100497254 + (TG)n Simple_repeat Simple_repeat 2 46 0 13225 190 59 28 chr6 81917988 81922838 -100492404 - L1MA4 LINE L1 -459 6023 906 2229 75 3 14 chr6 81922838 81923132 -100492110 + AluY SINE Alu 1 291 -20 13225 190 59 28 chr6 81923132 81924067 -100491175 - L1MA4 LINE L1 -5576 906 1 262 315 82 78 chr6 81924198 81924455 -100490787 + L2 LINE L2 2989 3246 -26 215 320 0 0 chr6 81925308 81925358 -100489884 - MIR SINE MIR -181 81 32 405 0 0 0 chr6 81925358 81925403 -100489839 + (A)n Simple_repeat Simple_repeat 1 45 0 21 95 0 0 chr6 81927505 81927568 -100487674 + AT_rich Low_complexity Low_complexity 1 63 0 43877 41 3 3 chr6 81927636 81933235 -100482007 + L1P2 LINE L1 1 5600 -555 338 24 0 0 chr6 81933335 81933377 -100481865 + L1PA3 LINE L1 6109 6150 -5 203 30 0 61 chr6 81933381 81933414 -100481828 + (TAAAAA)n Simple_repeat Simple_repeat 4 34 0 726 287 34 5 chr6 81933460 81933669 -100481573 + MIR SINE MIR 48 262 0 404 277 115 18 chr6 81933852 81934071 -100481171 - MIR SINE MIR -30 232 4 345 237 44 26 chr6 81934406 81934520 -100480722 + MER103 DNA DNA 39 154 -12 254 355 116 0 chr6 81934607 81934728 -100480514 + MIR SINE MIR 16 150 -58 184 355 145 0 chr6 81935238 81935314 -100479928 + L2 LINE L2 3153 3239 -33 28 48 0 0 chr6 81935565 81935607 -100479635 + AT_rich Low_complexity Low_complexity 1 42 0 3579 111 2 6 chr6 81935660 81936154 -100479088 - L1PA15-16 LINE L1 -6357 492 1 425 312 47 12 chr6 81936204 81936374 -100478868 - MIR SINE MIR -15 247 72 53 78 0 0 chr6 81936508 81936624 -100478618 + AT_rich Low_complexity Low_complexity 1 116 0 1332 213 128 27 chr6 81936781 81937345 -100477897 + MER114 LTR ERV 28 648 0 319 316 88 0 chr6 81938590 81938726 -100476516 + L2 LINE L2 2889 3036 -236 24 0 0 0 chr6 81938844 81938868 -100476374 + AT_rich Low_complexity Low_complexity 1 24 0 213 284 216 29 chr6 81939364 81939466 -100475776 + L2 LINE L2 3193 3313 0 2122 113 0 0 chr6 81941391 81941673 -100473569 - AluSx SINE Alu -25 287 6 25 0 0 0 chr6 81941682 81941707 -100473535 + AT_rich Low_complexity Low_complexity 1 25 0 473 267 23 45 chr6 81942273 81942449 -100472793 + MIR SINE MIR 59 230 -32 246 32 0 0 chr6 81943475 81943506 -100471736 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 324 0 0 0 chr6 81943505 81943541 -100471701 + (GA)n Simple_repeat Simple_repeat 1 36 0 969 321 78 20 chr6 81943758 81944260 -100470982 + L2 LINE L2 2384 2914 -400 1588 199 45 37 chr6 81944289 81944666 -100470576 - MLT1B LTR MaLR -8 382 3 535 292 42 120 chr6 81944669 81945070 -100470172 + L2 LINE L2 2944 3313 0 2152 108 16 10 chr6 81945126 81945433 -100469809 + AluSx SINE Alu 1 309 -3 1018 223 38 0 chr6 81945595 81945806 -100469436 + MER20 DNA MER1_type 1 219 0 2335 105 0 0 chr6 81946030 81946335 -100468907 - AluSq SINE Alu -6 307 3 238 133 56 0 chr6 81946338 81946428 -100468814 + (TA)n Simple_repeat Simple_repeat 1 95 0 2202 82 21 0 chr6 81946428 81946709 -100468533 - AluY SINE Alu -24 287 1 834 348 110 38 chr6 81946885 81947640 -100467602 + L3 LINE CR1 767 1575 -2 35 88 0 0 chr6 81947917 81948008 -100467234 + AT_rich Low_complexity Low_complexity 1 91 0 351 324 43 7 chr6 81948063 81948202 -100467040 + MIR3 SINE MIR 60 203 -5 525 294 90 95 chr6 81949249 81949692 -100465550 + LTR33 LTR ERVL 54 494 -27 547 302 83 48 chr6 81949708 81950298 -100464944 - L1M4 LINE L1 -2860 3286 2676 2118 119 0 26 chr6 81950450 81950753 -100464489 - AluSq SINE Alu -18 295 1 245 290 47 30 chr6 81950778 81950947 -100464295 - L1M4 LINE L1 -3664 2482 2311 264 300 0 14 chr6 81950989 81951059 -100464183 + GA-rich Low_complexity Low_complexity 1 69 0 641 321 38 13 chr6 81951735 81951972 -100463270 - MIR SINE MIR -18 244 2 23 0 0 0 chr6 81952928 81952951 -100462291 + AT_rich Low_complexity Low_complexity 1 23 0 312 286 114 59 chr6 81952960 81953180 -100462062 + L1MC4 LINE L1 7506 7737 -305 325 261 23 15 chr6 81953262 81953392 -100461850 + (TA)n Simple_repeat Simple_repeat 1 131 0 335 280 34 0 chr6 81953529 81953647 -100461595 + GA-rich Low_complexity Low_complexity 1 122 0 362 325 67 0 chr6 81958160 81958280 -100456962 - LTR16A LTR ERVL -171 279 152 650 293 32 0 chr6 81958472 81958660 -100456582 + LTR16A LTR ERVL 257 450 0 182 298 0 0 chr6 81959208 81959255 -100455987 - L3b LINE CR1 0 1583 1537 1839 176 0 17 chr6 81961439 81961740 -100453502 + AluJb SINE Alu 1 296 -16 256 24 49 0 chr6 81962595 81962636 -100452606 + (TA)n Simple_repeat Simple_repeat 1 43 0 1068 196 43 24 chr6 81963300 81963555 -100451687 + MLT1C LTR MaLR 208 467 0 945 173 128 9 chr6 82014872 82015098 -100400144 - THE1B LTR MaLR -111 253 1 9079 124 32 34 chr6 82015105 82016679 -100398563 - THE1C-int LTR MaLR -7 1573 3 1680 140 74 44 chr6 82016681 82017045 -100398197 - THE1C LTR MaLR 0 375 1 420 191 67 0 chr6 82017120 82017225 -100398017 - MER63 DNA MER1_type -37 1025 914 722 289 14 67 chr6 82017420 82017766 -100397476 - MLT1K LTR MaLR -249 339 12 277 322 136 34 chr6 82017795 82018208 -100397034 - L2 LINE L2 -1216 2098 1644 23 33 0 0 chr6 82018426 82018456 -100396786 + AT_rich Low_complexity Low_complexity 1 30 0 213 200 0 0 chr6 82021280 82021320 -100393922 + CT-rich Low_complexity Low_complexity 1 40 0 545 280 116 62 chr6 82022298 82022719 -100392523 - LTR33 LTR ERVL -77 444 1 2293 126 25 3 chr6 82024238 82024594 -100390648 + THE1B LTR MaLR 1 364 0 6408 231 50 10 chr6 82024607 82026419 -100388823 - L1M4 LINE L1 -604 6385 4477 1166 180 40 117 chr6 82026419 82026814 -100388428 + MLT1A1 LTR MaLR 1 365 0 6408 231 50 10 chr6 82026814 82027164 -100388078 - L1M4 LINE L1 -2512 4477 4142 6213 218 56 47 chr6 82027144 82028869 -100386373 - L1M4 LINE L1 -5179 1680 10 * 397 331 37 7 chr6 82029779 82029915 -100385327 + MIR SINE MIR 3 142 -120 306 206 15 0 chr6 82029948 82030016 -100385226 - MIR SINE MIR -10 252 184 231 275 12 12 chr6 82030002 82030082 -100385160 + MIR SINE MIR 183 262 0 * 463 229 90 8 chr6 82031542 82031664 -100383578 - MIR SINE MIR -111 151 20 284 336 53 0 chr6 82032399 82032512 -100382730 - MIR SINE MIR -138 124 6 313 256 200 31 chr6 82032588 82032713 -100382529 + MIR SINE MIR 51 210 -52 2068 147 9 20 chr6 82032713 82033060 -100382182 - MER61A LTR ERV1 0 343 1 313 256 200 31 chr6 82033060 82033094 -100382148 + MIR SINE MIR 210 237 -25 860 356 121 33 chr6 82034134 82035130 -100380112 - L2 LINE L2 -6 3266 2196 755 234 44 71 chr6 82035281 82035576 -100379666 + L2 LINE L2 3027 3313 0 232 422 25 25 chr6 82035816 82036015 -100379227 - L2 LINE L2 -2048 1266 1068 772 331 121 49 chr6 82037231 82037990 -100377252 - L2 LINE L2 -2283 1031 218 303 330 179 34 chr6 82038016 82038373 -100376869 - L2 LINE L2 -563 2751 2343 1176 208 49 41 chr6 82038415 82038839 -100376403 + MLT1J LTR MaLR 36 510 -1 204 350 50 0 chr6 82038841 82038941 -100376301 - L2 LINE L2 -967 2347 2243 243 61 0 0 chr6 82043399 82043432 -100371810 + (TA)n Simple_repeat Simple_repeat 1 33 0 209 208 0 0 chr6 82043551 82043599 -100371643 + (TA)n Simple_repeat Simple_repeat 2 49 0 320 64 21 0 chr6 82045224 82045271 -100369971 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 2343 74 7 3 chr6 82045471 82045768 -100369474 + AluY SINE Alu 1 298 -13 301 345 11 21 chr6 82047415 82047606 -100367636 - MER5A DNA MER1_type 0 189 1 294 29 0 0 chr6 82048450 82048485 -100366757 + (TC)n Simple_repeat Simple_repeat 2 36 0 2307 67 14 0 chr6 82048806 82049103 -100366139 + L1PA7 LINE L1 5849 6149 -5 1273 280 65 17 chr6 82049332 82050055 -100365187 + L2 LINE L2 2549 3312 -1 250 133 0 0 chr6 82050803 82050848 -100364394 + MADE1 DNA Mariner 1 45 -35 22 70 0 0 chr6 82051349 82051392 -100363850 + AT_rich Low_complexity Low_complexity 1 43 0 2914 9 0 0 chr6 82052086 82052402 -100362840 + AluYb8 SINE Alu 1 316 -2 27 29 0 0 chr6 82053070 82053104 -100362138 + AT_rich Low_complexity Low_complexity 1 34 0 2763 13 0 0 chr6 82053365 82053671 -100361571 + AluYa5 SINE Alu 1 306 -5 30 0 0 0 chr6 82054210 82054240 -100361002 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 82054909 82054931 -100360311 + AT_rich Low_complexity Low_complexity 1 22 0 1890 159 0 17 chr6 82055122 82055418 -100359824 + AluJo SINE Alu 1 291 -21 197 250 0 0 chr6 82058523 82058567 -100356675 + L2 LINE L2 3209 3252 -20 21 82 0 0 chr6 82059678 82059727 -100355515 + AT_rich Low_complexity Low_complexity 1 49 0 185 263 34 19 chr6 82060388 82060464 -100354778 - MIR SINE MIR -84 124 44 502 258 220 34 chr6 82062374 82062665 -100352577 + L2 LINE L2 2967 3311 -2 1921 136 43 10 chr6 82063640 82063942 -100351300 - AluSx SINE Alu 0 312 1 2219 118 10 0 chr6 82064015 82064321 -100350921 - AluSq SINE Alu -4 309 1 278 0 0 51 chr6 82064811 82064850 -100350392 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 1588 194 0 28 chr6 82064850 82065138 -100350104 - AluJo SINE Alu -32 280 1 230 250 54 0 chr6 82066081 82066137 -100349105 + MIR SINE MIR 71 129 -133 839 153 34 53 chr6 82067709 82067918 -100347324 + L1MA9 LINE L1 6102 6306 -6 1468 102 10 0 chr6 82068925 82069130 -100346112 + L1PA12 LINE L1 5955 6161 -7 29 28 0 0 chr6 82069883 82069919 -100345323 + AT_rich Low_complexity Low_complexity 1 36 0 273 163 0 0 chr6 82070510 82070559 -100344683 + GA-rich Low_complexity Low_complexity 2 50 0 477 232 260 6 chr6 82076699 82076876 -100338366 + MIR SINE MIR 12 233 -29 513 149 81 0 chr6 82078289 82078376 -100336866 + MER5A DNA MER1_type 11 104 -85 1944 103 60 11 chr6 82078609 82078891 -100336351 - AluSc SINE Alu -13 296 1 1404 123 8 41 chr6 82079032 82079275 -100335967 + L1MC1 LINE L1 6099 6333 0 22 35 0 0 chr6 82079370 82079399 -100335843 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 82080156 82080184 -100335058 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 82081684 82081719 -100333523 + AT_rich Low_complexity Low_complexity 1 35 0 327 316 63 0 chr6 82082197 82082292 -100332950 + L2 LINE L2 3172 3272 0 235 297 16 0 chr6 82083543 82083607 -100331635 - MIR3 SINE MIR -3 205 141 543 235 118 0 chr6 82084336 82084489 -100330753 + MER5B DNA MER1_type 2 172 -6 290 274 14 14 chr6 82085347 82085420 -100329822 + MIR SINE MIR 19 91 -171 249 274 0 98 chr6 82085549 82085651 -100329591 - L2 LINE L2 -13 3259 3168 216 261 159 0 chr6 82090811 82090880 -100324362 + L2 LINE L2 3234 3313 0 2277 109 0 3 chr6 82091038 82091342 -100323900 + AluSx SINE Alu 1 303 -9 22 56 0 0 chr6 82091343 82091379 -100323863 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr6 82094163 82094186 -100321056 + AT_rich Low_complexity Low_complexity 1 23 0 1418 212 13 71 chr6 82094507 82094889 -100320353 + MLT1A2 LTR MaLR 15 374 0 211 114 29 0 chr6 82095009 82095044 -100320198 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr6 82095140 82095168 -100320074 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 82096842 82096866 -100318376 + AT_rich Low_complexity Low_complexity 1 24 0 2509 62 0 0 chr6 82097125 82097429 -100317813 + AluY SINE Alu 1 304 -7 1545 165 18 28 chr6 82097609 82097936 -100317306 + MER33 DNA MER1_type 1 324 0 187 250 125 36 chr6 82098008 82098064 -100317178 - L2 LINE L2 -50 3263 3203 335 247 34 22 chr6 82101488 82101577 -100313665 + L2 LINE L2 3220 3309 -4 346 193 96 96 chr6 82101727 82101893 -100313349 - HsTC2 DNA Tc2 -1 1897 14 2004 132 0 7 chr6 82102357 82102677 -100312565 - AluSx SINE Alu 0 312 8 24 53 0 0 chr6 82103373 82103411 -100311831 + AT_rich Low_complexity Low_complexity 1 38 0 209 217 22 0 chr6 82104281 82104327 -100310915 + L2 LINE L2 3223 3269 -3 301 294 37 28 chr6 82104705 82104814 -100310428 + MIR3 SINE MIR 85 194 -14 2033 129 45 31 chr6 82105553 82105910 -100309332 + THE1B LTR MaLR 2 363 -1 232 278 153 0 chr6 82107161 82107233 -100308009 + MIR3 SINE MIR 87 169 -39 798 259 22 45 chr6 82107655 82107879 -100307363 + MER20 DNA MER1_type 1 219 0 35 96 0 18 chr6 82110776 82110942 -100304300 + AT_rich Low_complexity Low_complexity 1 163 0 261 167 62 0 chr6 82111681 82111729 -100303513 + L2 LINE L2 3250 3300 -13 3335 262 83 24 chr6 82114219 82114886 -100300356 + L1MEc LINE L1 123 749 -5647 1254 201 33 101 chr6 82114886 82115283 -100299959 + MLT1A2 LTR MaLR 5 374 0 3335 262 83 24 chr6 82115283 82115928 -100299314 + L1MEc LINE L1 749 1513 -4883 215 98 66 0 chr6 82116161 82116222 -100299020 + (TA)n Simple_repeat Simple_repeat 1 65 0 833 168 8 0 chr6 82117359 82117489 -100297753 + MER2 DNA MER2_type 1 131 -214 2947 149 64 2 chr6 82117489 82118018 -100297224 - MER6A DNA MER2_type 0 605 44 370 101 101 0 chr6 82118038 82118107 -100297135 + MER2 DNA MER2_type 131 206 -139 9910 74 0 0 chr6 82118284 82120422 -100294820 + L1PA7 LINE L1 4018 6151 -3 1054 127 26 32 chr6 82121313 82121502 -100293740 - L1MC1 LINE L1 -1 6332 6145 207 88 0 0 chr6 82121682 82121716 -100293526 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 641 247 39 22 chr6 82121754 82121936 -100293306 - MIR SINE MIR 0 262 78 214 200 0 18 chr6 82123951 82124006 -100291236 + T-rich Low_complexity Low_complexity 1 54 0 279 225 125 92 chr6 82125312 82125432 -100289810 + MER5B DNA MER1_type 29 152 -26 1068 159 0 127 chr6 82129534 82129786 -100285456 - MER8 DNA MER2_type -14 225 6 475 304 25 25 chr6 82129860 82130021 -100285221 - MIR SINE MIR -46 216 56 2285 97 7 0 chr6 82130132 82130422 -100284820 - AluSq SINE Alu -18 295 4 21 36 0 0 chr6 82130434 82130462 -100284780 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 82130639 82130667 -100284575 + AT_rich Low_complexity Low_complexity 1 28 0 2320 71 3 0 chr6 82131026 82131321 -100283921 + AluY SINE Alu 1 296 -15 189 281 56 45 chr6 82131354 82131443 -100283799 + MIR3 SINE MIR 10 99 -109 247 310 17 17 chr6 82132937 82133111 -100282131 + GA-rich Low_complexity Low_complexity 5 178 0 229 322 6 33 chr6 82133118 82133301 -100281941 + G-rich Low_complexity Low_complexity 2 179 0 471 330 73 11 chr6 82133365 82133556 -100281686 + MIR SINE MIR 57 259 -3 23 0 0 0 chr6 82133838 82133861 -100281381 + AT_rich Low_complexity Low_complexity 1 23 0 2056 113 21 0 chr6 82133905 82134188 -100281054 + AluSx SINE Alu 1 289 -23 23 33 0 0 chr6 82134188 82134218 -100281024 + AT_rich Low_complexity Low_complexity 1 30 0 24 85 0 0 chr6 82134912 82134971 -100280271 + AT_rich Low_complexity Low_complexity 1 59 0 379 284 198 10 chr6 82135697 82135894 -100279348 + MIR SINE MIR 23 256 -6 363 349 80 52 chr6 82136227 82136554 -100278688 - L3b LINE CR1 -26 1557 1222 2489 134 56 35 chr6 82136676 82136765 -100278477 + L1MB3 LINE L1 5686 5772 -411 640 217 8 8 chr6 82136765 82136885 -100278357 + FLAM_A SINE Alu 1 120 -13 2489 134 56 35 chr6 82136885 82137281 -100277961 + L1MB3 LINE L1 5772 6181 -2 24 77 0 0 chr6 82137282 82137334 -100277908 + AT_rich Low_complexity Low_complexity 1 52 0 1941 148 0 19 chr6 82138562 82138872 -100276370 + AluSx SINE Alu 5 308 -4 2449 88 0 3 chr6 82138963 82139294 -100275948 - L1PA7 LINE L1 -2 6152 5823 219 146 0 24 chr6 82141226 82141267 -100273975 + L2 LINE L2 3271 3310 -3 7232 172 1 7 chr6 82141764 82143889 -100271353 + L1PA13 LINE L1 4031 6157 -6 186 71 0 0 chr6 82143900 82143928 -100271314 + (TA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr6 82147616 82147637 -100267605 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 82148564 82148592 -100266650 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr6 82148918 82148952 -100266290 + AT_rich Low_complexity Low_complexity 1 34 0 21 71 0 0 chr6 82149789 82149831 -100265411 + AT_rich Low_complexity Low_complexity 1 42 0 4943 41 7 11 chr6 82150325 82150938 -100264304 - L1PA5 LINE L1 0 6154 5545 22 0 0 0 chr6 82152376 82152398 -100262844 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr6 82153944 82153986 -100261256 + AT_rich Low_complexity Low_complexity 1 42 0 2270 109 3 0 chr6 82154050 82154362 -100260880 - AluSp SINE Alu 0 313 1 321 321 202 9 chr6 82154670 82154888 -100260354 - MIR SINE MIR 0 262 3 1008 47 78 0 chr6 82154962 82155091 -100260151 + MER85 DNA T2_type 1 139 0 202 183 70 0 chr6 82155162 82155277 -100259965 + (TA)n Simple_repeat Simple_repeat 2 124 0 449 276 55 17 chr6 82155916 82156097 -100259145 + MIR3 SINE MIR 4 191 -17 1056 153 70 126 chr6 82156979 82157061 -100258181 + MER33 DNA MER1_type 1 86 -2499 2045 112 0 0 chr6 82157061 82157337 -100257905 + AluSx SINE Alu 21 296 -16 1056 153 70 126 chr6 82157337 82157595 -100257647 + MER33 DNA MER1_type 86 322 -2 23 0 0 0 chr6 82157627 82157650 -100257592 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr6 82157723 82157758 -100257484 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 82160278 82160306 -100254936 + AT_rich Low_complexity Low_complexity 1 28 0 405 0 0 0 chr6 82164875 82164920 -100250322 + (TC)n Simple_repeat Simple_repeat 2 46 0 * 540 0 0 0 chr6 82164919 82164979 -100250263 + (TG)n Simple_repeat Simple_repeat 1 60 0 222 227 136 57 chr6 82166587 82166675 -100248567 - L2 LINE L2 -10 3262 3168 216 0 0 0 chr6 82167663 82167687 -100247555 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1860 128 33 0 chr6 82167689 82167963 -100247279 - AluSx SINE Alu -29 283 1 398 227 40 106 chr6 82168370 82168568 -100246674 + L1MC5 LINE L1 7354 7538 -423 1937 243 50 10 chr6 82168579 82169078 -100246164 - LTR40a LTR ERVL 0 519 1 414 293 18 48 chr6 82170709 82170876 -100244366 + MER5B DNA MER1_type 8 169 -9 2239 111 0 0 chr6 82171204 82171501 -100243741 - AluSx SINE Alu -15 297 1 204 322 11 23 chr6 82171746 82171833 -100243409 - MIR3 SINE MIR -2 206 121 937 247 103 77 chr6 82172412 82172866 -100242376 - MLT1J LTR MaLR -19 492 27 323 147 84 38 chr6 82173203 82173339 -100241903 - MLT1A1 LTR MaLR 0 374 186 572 183 0 0 chr6 82173376 82173480 -100241762 - FAM SINE Alu 0 185 82 800 109 68 34 chr6 82173485 82173632 -100241610 - MLT1A1 LTR MaLR -213 152 1 272 319 0 0 chr6 82174865 82174937 -100240305 - MIR SINE MIR -96 112 41 33 0 0 0 chr6 82175382 82175415 -100239827 + AT_rich Low_complexity Low_complexity 1 33 0 2027 199 42 68 chr6 82175517 82175648 -100239594 + L1ME1 LINE L1 5555 5688 -478 1669 169 28 3 chr6 82175648 82175932 -100239310 + AluJo SINE Alu 1 291 -21 2027 199 42 68 chr6 82175932 82176419 -100238823 + L1ME1 LINE L1 5688 6157 -9 328 339 100 63 chr6 82176504 82176805 -100238437 - L2 LINE L2 -12 3260 2949 604 223 0 8 chr6 82177424 82177545 -100237697 - MLT1J LTR MaLR -317 194 75 1525 187 26 30 chr6 82177709 82178014 -100237228 - AluJo SINE Alu 0 312 9 200 309 0 0 chr6 82178062 82178117 -100237125 + MIR SINE MIR 204 258 -4 1748 156 45 63 chr6 82179814 82180211 -100235031 - MLT1B LTR MaLR 0 390 1 363 262 173 18 chr6 82180632 82180857 -100234385 - MLT1L LTR MaLR -17 598 339 351 0 0 0 chr6 82180900 82180939 -100234303 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 971 248 103 75 chr6 82181225 82181752 -100233490 - MLT1G LTR MaLR 0 595 12 1732 90 124 15 chr6 82182395 82182661 -100232581 + AluSg SINE Alu 9 303 -7 33 0 0 0 chr6 82182677 82182710 -100232532 + AT_rich Low_complexity Low_complexity 1 33 0 848 196 0 0 chr6 82182710 82182863 -100232379 + AluJb SINE Alu 160 312 0 527 159 56 9 chr6 82183509 82183616 -100231626 + L1MA8 LINE L1 4015 4126 -2020 2347 75 34 0 chr6 82183626 82183921 -100231321 - AluSq SINE Alu -8 305 1 5548 148 31 13 chr6 82183923 82185021 -100230221 + L1MA8 LINE L1 4217 5334 -812 4507 136 48 72 chr6 82185689 82185736 -100229506 + L1MA8 LINE L1 5317 5364 -927 2004 157 0 0 chr6 82185736 82186035 -100229207 + AluJb SINE Alu 1 299 -13 4507 136 48 72 chr6 82186035 82186895 -100228347 + L1MA8 LINE L1 5364 6200 -91 561 96 0 0 chr6 82186895 82186989 -100228253 + (TA)n Simple_repeat Simple_repeat 1 94 0 4507 136 48 72 chr6 82186989 82187075 -100228167 + L1MA8 LINE L1 6200 6287 -4 23 0 0 0 chr6 82187088 82187111 -100228131 + AT_rich Low_complexity Low_complexity 1 23 0 758 253 6 0 chr6 82188011 82188189 -100227053 + MER8 DNA MER2_type 1 179 -60 391 271 34 8 chr6 82188281 82188399 -100226843 + L2 LINE L2 3193 3313 0 2034 161 10 3 chr6 82189278 82189588 -100225654 + AluSx SINE Alu 1 312 0 1220 208 60 51 chr6 82189777 82190147 -100225095 + MLT1B LTR MaLR 16 388 -2 754 158 8 23 chr6 82191347 82191480 -100223762 - FLAM_A SINE Alu -2 131 1 515 284 174 34 chr6 82192297 82192624 -100222618 + L2 LINE L2 2941 3313 0 1087 288 131 28 chr6 82192669 82193068 -100222174 + L2 LINE L2 2540 2896 -417 1701 194 46 0 chr6 82193068 82193397 -100221845 - MER2 DNA MER2_type 0 344 1 1087 288 131 28 chr6 82193397 82193673 -100221569 + L2 LINE L2 2896 3291 -22 30 27 0 0 chr6 82194880 82194917 -100220325 + AT_rich Low_complexity Low_complexity 1 37 0 2490 66 13 0 chr6 82195176 82195479 -100219763 + AluSp SINE Alu 1 307 -6 2157 131 3 0 chr6 82195560 82195865 -100219377 - AluSx SINE Alu -6 306 1 1541 150 58 0 chr6 82195899 82196159 -100219083 + MER21A LTR ERV1 623 897 -34 191 272 148 12 chr6 82196183 82196264 -100218978 - L3 LINE CR1 -1082 495 404 266 274 57 0 chr6 82196324 82196430 -100218812 - MER112 DNA MER1_type -144 116 5 2355 85 3 0 chr6 82196570 82196865 -100218377 + AluSp SINE Alu 1 296 -17 190 298 0 0 chr6 82196927 82196974 -100218268 + MIR SINE MIR 19 65 -197 211 347 138 36 chr6 82198043 82198210 -100217032 - MIR3 SINE MIR -21 187 4 2240 78 7 10 chr6 82198415 82198708 -100216534 + AluSp SINE Alu 2 293 -20 1843 102 4 0 chr6 82198718 82198963 -100216279 + AluSp SINE Alu 50 295 -18 2248 110 3 3 chr6 82198973 82199283 -100215959 + AluSq SINE Alu 1 310 -3 2125 110 10 0 chr6 82199290 82199633 -100215609 + AluSx SINE Alu 1 312 0 27 0 0 0 chr6 82199840 82199867 -100215375 + AT_rich Low_complexity Low_complexity 1 27 0 2386 78 0 0 chr6 82201960 82202256 -100212986 + AluY SINE Alu 1 296 -15 1326 236 155 99 chr6 82202387 82203328 -100211914 + L2 LINE L2 1749 2742 -572 431 250 0 0 chr6 82203326 82203414 -100211828 + L2 LINE L2 3225 3312 -1 * 5236 60 61 24 chr6 82204424 82204832 -100210410 + MER4E LTR ERV1 1 450 -316 2851 3 0 0 chr6 82204832 82205138 -100210104 - AluYa5 SINE Alu -5 306 1 5236 60 61 24 chr6 82205138 82205468 -100209774 + MER4E LTR ERV1 450 766 0 2123 51 69 18 chr6 82205721 82205997 -100209245 + AluSc SINE Alu 1 290 -19 416 266 144 29 chr6 82206160 82206333 -100208909 + MIR SINE MIR 11 203 -59 350 305 103 22 chr6 82207309 82207539 -100207703 - MIR SINE MIR -14 248 2 502 228 75 40 chr6 82208048 82208276 -100206966 + L1ME1 LINE L1 5822 6057 -109 550 310 51 74 chr6 82208349 82208742 -100206500 + HAL1 LINE L1 87 470 -2037 516 273 149 43 chr6 82208884 82209206 -100206036 + HAL1 LINE L1 772 1127 -1380 631 222 177 24 chr6 82209208 82209632 -100205610 + HAL1 LINE L1 2012 2500 -7 22 56 0 0 chr6 82211626 82211662 -100203580 + AT_rich Low_complexity Low_complexity 1 36 0 401 340 148 0 chr6 82214819 82215022 -100200220 + MIR SINE MIR 19 251 -11 24 32 0 0 chr6 82215146 82215177 -100200065 + AT_rich Low_complexity Low_complexity 1 31 0 1235 197 32 11 chr6 82216593 82216872 -100198370 + MER33 DNA MER1_type 2 286 -38 2131 116 0 7 chr6 82216874 82217184 -100198058 + AluSg SINE Alu 1 308 -2 231 132 0 191 chr6 82217187 82217255 -100197987 + MER33 DNA MER1_type 270 324 0 1845 155 7 3 chr6 82218815 82219111 -100196131 + AluJb SINE Alu 1 297 -15 2327 80 0 10 chr6 82219113 82219413 -100195829 + AluSg1 SINE Alu 1 297 -12 274 382 32 16 chr6 82219430 82219553 -100195689 - L2 LINE L2 -12 3260 3136 911 288 172 23 chr6 82219604 82220248 -100194994 - L2 LINE L2 -3 3310 2581 225 200 0 0 chr6 82220528 82220568 -100194674 + MER58 DNA MER1_type 2381 2420 0 2304 112 0 0 chr6 82221104 82221416 -100193826 + AluSx SINE Alu 1 312 0 2047 123 11 0 chr6 82221570 82221847 -100193395 + AluSg SINE Alu 1 280 -30 427 235 15 66 chr6 82222469 82222605 -100192637 - FLAM_A SINE Alu -7 135 7 1023 264 59 90 chr6 82224962 82225688 -100189554 + MER21B LTR ERV1 21 808 -123 4004 139 42 4 chr6 82225741 82226447 -100188795 - L1MC1 LINE L1 0 6333 5601 2352 85 3 0 chr6 82226449 82226743 -100188499 - AluSc SINE Alu -14 295 1 628 118 0 0 chr6 82226769 82226854 -100188388 - AluY SINE Alu -225 85 1 1296 138 69 4 chr6 82226854 82227085 -100188157 - L1MC1 LINE L1 -734 5610 5365 1631 208 20 29 chr6 82227087 82227433 -100187809 + MLT1A2 LTR MaLR 1 343 -31 370 261 197 11 chr6 82228340 82228523 -100186719 - MIR3 SINE MIR -43 219 6 182 268 54 36 chr6 82228878 82228934 -100186308 - MIR SINE MIR -5 257 201 2193 162 21 27 chr6 82228936 82229469 -100185773 + LTR10E LTR ERV1 1 590 -43 364 264 8 41 chr6 82229834 82229955 -100185287 + LTR67 LTR ERVL 425 541 -16 194 188 42 0 chr6 82230105 82230153 -100185089 - L2 LINE L2 -2 3270 3221 26 0 0 0 chr6 82230224 82230250 -100184992 + AT_rich Low_complexity Low_complexity 1 26 0 265 303 82 8 chr6 82230652 82230774 -100184468 - L2 LINE L2 -1 3312 3182 438 350 106 32 chr6 82230967 82231438 -100183804 - L2 LINE L2 -397 2917 2412 * 2098 206 71 99 chr6 82231433 82231492 -100183750 + L2 LINE L2 1879 1938 -1376 2346 56 42 0 chr6 82231492 82231778 -100183464 + AluY SINE Alu 1 298 -13 2098 206 71 99 chr6 82231778 82232505 -100182737 + L2 LINE L2 1938 2643 -671 4124 182 37 49 chr6 82232505 82233364 -100181878 + MER21B LTR ERV1 1 849 -14 1096 249 108 22 chr6 82233384 82233855 -100181387 + L2 LINE L2 2639 3152 -161 246 271 178 0 chr6 82234074 82234181 -100181061 + MIR SINE MIR 137 262 0 916 153 32 13 chr6 82234196 82234353 -100180889 + AluJo SINE Alu 123 282 -30 1539 206 0 16 chr6 82234370 82234686 -100180556 + AluJo SINE Alu 1 311 -1 188 247 224 0 chr6 82234690 82234775 -100180467 - L2 LINE L2 -1604 1710 1607 428 316 137 42 chr6 82235028 82235341 -100179901 + MLT1J LTR MaLR 1 343 -168 1536 142 70 38 chr6 82237056 82237401 -100177841 - MER58D DNA MER1_type 0 386 31 23 0 0 0 chr6 82238139 82238162 -100177080 + AT_rich Low_complexity Low_complexity 1 23 0 404 352 88 11 chr6 82238852 82239034 -100176208 - MIR3 SINE MIR -9 199 4 447 267 40 43 chr6 82239491 82239697 -100175545 - MIR SINE MIR -45 217 3 261 0 0 0 chr6 82240058 82240087 -100175155 + (TG)n Simple_repeat Simple_repeat 2 30 0 252 59 0 0 chr6 82240407 82240441 -100174801 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 255 175 0 0 chr6 82241471 82241528 -100173714 + (CCG)n Simple_repeat Simple_repeat 3 59 0 212 215 31 0 chr6 82241601 82241666 -100173576 + G-rich Low_complexity Low_complexity 1 67 0 266 214 68 17 chr6 82242434 82242551 -100172691 + L1ME4a LINE L1 5988 6110 -11 2425 57 10 0 chr6 82242729 82243026 -100172216 + AluSq SINE Alu 1 300 -13 1572 139 81 4 chr6 82245162 82245421 -100169821 - AluSx SINE Alu -16 296 18 2480 90 0 0 chr6 82245715 82246027 -100169215 - AluSx SINE Alu 0 312 1 2103 120 7 0 chr6 82246273 82246573 -100168669 + AluY SINE Alu 1 302 -9 530 298 55 93 chr6 82246822 82247111 -100168131 + L2 LINE L2 2986 3263 -9 192 306 20 0 chr6 82247120 82247169 -100168073 - L2 LINE L2 -96 3176 3127 30 45 0 0 chr6 82250799 82250843 -100164399 + AT_rich Low_complexity Low_complexity 1 44 0 1726 147 13 52 chr6 82251447 82251753 -100163489 - AluJo SINE Alu -16 296 3 378 0 0 0 chr6 82253092 82253134 -100162108 + (TG)n Simple_repeat Simple_repeat 1 42 0 369 0 0 0 chr6 82253226 82253267 -100161975 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1933 59 4 0 chr6 82253269 82253508 -100161734 - AluY SINE Alu -31 280 41 33 25 0 0 chr6 82253514 82253554 -100161688 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr6 82253595 82253618 -100161624 + AT_rich Low_complexity Low_complexity 1 23 0 296 228 103 44 chr6 82253682 82253818 -100161424 - L2 LINE L2 0 3313 3170 2101 120 0 3 chr6 82255385 82255677 -100159565 + AluSx SINE Alu 1 291 -21 234 239 0 0 chr6 82255677 82255723 -100159519 + MLT1F LTR MaLR 482 527 -15 33 0 0 0 chr6 82255758 82255791 -100159451 + AT_rich Low_complexity Low_complexity 1 33 0 196 204 0 45 chr6 82258254 82258298 -100156944 + MIR3 SINE MIR 160 201 -7 237 349 70 0 chr6 82258494 82258580 -100156662 - MIR SINE MIR -87 121 30 198 301 0 0 chr6 82258578 82258651 -100156591 - L3b LINE CR1 -157 1426 1354 * 280 349 167 29 chr6 82259325 82259554 -100155688 - L2 LINE L2 -337 2977 2781 554 14 0 28 chr6 82259554 82259626 -100155616 + (ATATG)n Simple_repeat Simple_repeat 4 73 0 280 349 167 29 chr6 82259626 82260252 -100154990 - L2 LINE L2 -533 2781 2004 328 343 203 10 chr6 82260262 82260469 -100154773 + HAL1 LINE L1 418 664 -1843 333 68 0 0 chr6 82260492 82260536 -100154706 + (GA)n Simple_repeat Simple_repeat 2 45 0 301 108 15 31 chr6 82260536 82260601 -100154641 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1165 246 68 77 chr6 82260653 82260948 -100154294 + HAL1 LINE L1 1827 2123 -384 1560 173 25 28 chr6 82260948 82261266 -100153976 - AluJb SINE Alu 0 317 1 1165 246 68 77 chr6 82261266 82261656 -100153586 + HAL1 LINE L1 2123 2507 0 220 296 68 0 chr6 82262485 82262573 -100152669 - MER91C DNA MER1_type 0 140 47 689 100 0 0 chr6 82263493 82263593 -100151649 - AluSg/x SINE Alu -2 310 211 1619 89 0 0 chr6 82263593 82263795 -100151447 - AluSq SINE Alu -53 260 59 304 316 32 0 chr6 82464581 82464676 -99950566 + MIR3 SINE MIR 73 170 -38 277 295 85 8 chr6 82465196 82465325 -99949917 - L1ME LINE L1 -520 5601 5463 22 0 0 0 chr6 82465350 82465372 -99949870 + AT_rich Low_complexity Low_complexity 1 22 0 2199 129 0 0 chr6 82465475 82465784 -99949458 + AluSx SINE Alu 1 309 -3 468 206 0 0 chr6 82466296 82466388 -99948854 - FLAM_A SINE Alu -10 132 41 306 305 129 52 chr6 82467004 82467214 -99948028 + L2 LINE L2 3047 3272 0 399 256 74 62 chr6 82469679 82469855 -99945387 + MIR SINE MIR 2 179 -83 223 317 0 49 chr6 82469921 82470003 -99945239 + MIR SINE MIR 21 98 -110 582 267 12 12 chr6 82470386 82470558 -99944684 + MER5B DNA MER1_type 5 176 -2 393 22 0 0 chr6 82471736 82471782 -99943460 + (CA)n Simple_repeat Simple_repeat 2 47 0 785 263 101 18 chr6 82472356 82472584 -99942658 + MIR SINE MIR 13 259 -3 200 197 0 16 chr6 82474305 82474366 -99940876 + CT-rich Low_complexity Low_complexity 1 60 0 557 233 138 6 chr6 82475314 82475473 -99939769 - MIR SINE MIR -67 195 16 21 57 0 0 chr6 82475576 82475611 -99939631 + AT_rich Low_complexity Low_complexity 1 35 0 282 56 0 0 chr6 82476399 82476435 -99938807 + (TG)n Simple_repeat Simple_repeat 1 36 0 224 59 29 0 chr6 82480498 82480532 -99934710 + (CA)n Simple_repeat Simple_repeat 2 36 0 1289 207 82 0 chr6 82481193 82481463 -99933779 + AluJb SINE Alu 1 292 -20 1783 69 53 8 chr6 82482317 82482564 -99932678 - AluY SINE Alu -17 294 37 23 54 0 0 chr6 82482720 82482757 -99932485 + AT_rich Low_complexity Low_complexity 1 37 0 1734 119 7 52 chr6 82483169 82483455 -99931787 - AluSx SINE Alu -5 307 35 1078 225 16 28 chr6 82483496 82483749 -99931493 - MIR SINE MIR 0 262 13 21 57 0 0 chr6 82484404 82484439 -99930803 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr6 82484479 82484516 -99930726 + AT_rich Low_complexity Low_complexity 1 37 0 603 199 0 32 chr6 82485049 82485235 -99930007 + (TA)n Simple_repeat Simple_repeat 1 180 0 275 300 11 11 chr6 82485308 82485398 -99929844 + MIR SINE MIR 52 141 -121 2388 152 63 49 chr6 82485871 82485896 -99929346 + L1MB2 LINE L1 5622 5645 -526 1384 200 88 0 chr6 82485896 82486216 -99929026 + MER7A DNA MER2_type 1 346 0 2388 152 63 49 chr6 82486216 82486244 -99928998 + L1MB2 LINE L1 5645 5671 -500 1518 200 25 0 chr6 82486244 82486529 -99928713 - AluJo SINE Alu -20 292 1 2388 152 63 49 chr6 82486529 82487001 -99928241 + L1MB2 LINE L1 5671 6155 -16 2025 103 0 37 chr6 82487003 82487324 -99927918 - AluSx SINE Alu -3 309 1 750 142 37 15 chr6 82487327 82487461 -99927781 - FLAM_C SINE Alu -6 137 1 1250 188 58 8 chr6 82487465 82487705 -99927537 - AluJb SINE Alu -10 302 51 196 265 0 20 chr6 82488371 82488420 -99926822 + L2 LINE L2 3261 3308 -5 21 0 0 0 chr6 82488706 82488727 -99926515 + AT_rich Low_complexity Low_complexity 1 21 0 1880 148 0 16 chr6 82488788 82489092 -99926150 + AluSx SINE Alu 2 300 -12 1759 164 11 7 chr6 82489368 82489649 -99925593 + AluJo SINE Alu 1 282 -30 183 42 0 0 chr6 82489652 82489676 -99925566 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1801 183 0 6 chr6 82489788 82490100 -99925142 + AluJb SINE Alu 1 310 -2 231 103 0 0 chr6 82490202 82490241 -99925001 + (CAAAAA)n Simple_repeat Simple_repeat 1 39 0 23 33 0 0 chr6 82490407 82490437 -99924805 + AT_rich Low_complexity Low_complexity 1 30 0 805 120 0 0 chr6 82490540 82490657 -99924585 - AluSg/x SINE Alu -1 311 195 58 0 0 0 chr6 82490759 82490817 -99924425 + AT_rich Low_complexity Low_complexity 1 58 0 2253 134 19 0 chr6 82490824 82491183 -99924059 - L1M2 LINE L1 -512 5788 5423 297 357 36 0 chr6 82492669 82492809 -99922433 + MER117 DNA MER1_type 53 197 0 2118 125 0 7 chr6 82494253 82494537 -99920705 + AluSx SINE Alu 1 284 -28 240 35 0 0 chr6 82494537 82494566 -99920676 + (CA)n Simple_repeat Simple_repeat 2 30 0 2118 125 0 7 chr6 82494566 82494577 -99920665 + AluSx SINE Alu 284 294 -18 1242 162 0 5 chr6 82495872 82496076 -99919166 + L1PB4 LINE L1 5940 6142 -14 2308 72 7 3 chr6 82496076 82496369 -99918873 - AluSq SINE Alu -19 294 1 222 213 43 0 chr6 82497172 82497219 -99918023 + MIR SINE MIR 98 146 -62 194 253 55 77 chr6 82497601 82497692 -99917550 - MIR SINE MIR -52 210 122 22 35 0 0 chr6 82504005 82504034 -99911208 + AT_rich Low_complexity Low_complexity 1 29 0 800 147 15 44 chr6 82506021 82506157 -99909085 + AluJo SINE Alu 5 136 -176 22 0 0 0 chr6 82506799 82506821 -99908421 + AT_rich Low_complexity Low_complexity 1 22 0 369 62 0 0 chr6 82507377 82507425 -99907817 + (CA)n Simple_repeat Simple_repeat 2 49 0 2106 141 0 0 chr6 82508501 82508813 -99906429 - AluJb SINE Alu 0 312 1 42004 36 25 1 chr6 82509461 82515465 -99899777 + L1PA3 LINE L1 1 6148 -7 31 68 0 0 chr6 82516882 82516941 -99898301 + AT_rich Low_complexity Low_complexity 1 59 0 1378 264 130 18 chr6 82518383 82518943 -99896299 + MER20B DNA MER1_type 11 633 -150 21 0 0 0 chr6 82519306 82519327 -99895915 + AT_rich Low_complexity Low_complexity 1 21 0 2245 98 0 7 chr6 82519391 82519688 -99895554 + AluSc SINE Alu 1 295 -14 409 75 149 0 chr6 82521516 82521583 -99893659 + MADE1 DNA Mariner 4 80 0 22 0 0 0 chr6 82522370 82522392 -99892850 + AT_rich Low_complexity Low_complexity 1 22 0 414 283 155 14 chr6 82523231 82523450 -99891792 - MIR SINE MIR 0 262 13 2247 103 10 10 chr6 82523545 82523856 -99891386 - AluY SINE Alu 0 311 1 2200 98 7 0 chr6 82524564 82524861 -99890381 + AluSx SINE Alu 3 301 -11 442 88 69 39 chr6 82525192 82525294 -99889948 + L1MB2 LINE L1 6065 6169 -2 2128 108 0 20 chr6 82525494 82525790 -99889452 + AluSx SINE Alu 1 290 -22 284 204 37 56 chr6 82526224 82526332 -99888910 + L1MC/D LINE L1 5362 5467 -654 1560 180 31 7 chr6 82526585 82526874 -99888368 - AluJb SINE Alu -16 296 1 1894 140 28 0 chr6 82526909 82527195 -99888047 - AluSx SINE Alu -14 298 5 2391 73 0 19 chr6 82527201 82527515 -99887727 - AluY SINE Alu -3 308 1 2320 108 3 0 chr6 82527539 82527845 -99887397 - AluSc SINE Alu -2 307 1 900 52 0 9 chr6 82527847 82527962 -99887280 - L1PA11 LINE L1 -12 6162 6049 1678 132 46 49 chr6 82529359 82529461 -99885781 - AluSx SINE Alu -9 303 202 2374 68 7 0 chr6 82529461 82529754 -99885488 + AluY SINE Alu 1 295 -16 1678 132 46 49 chr6 82529754 82529955 -99885287 - AluSx SINE Alu -110 202 1 3044 177 46 63 chr6 82530021 82530717 -99884525 + LTR8 LTR ERV1 8 691 0 477 240 53 7 chr6 82530854 82531004 -99884238 - MER103 DNA DNA -9 157 1 3502 146 46 28 chr6 82531620 82532685 -99882557 + Ricksha_a DNA DNA 29 1172 -9 1636 152 0 8 chr6 82533987 82534237 -99881005 - AluJb SINE Alu -64 248 1 1544 115 4 4 chr6 82534604 82534830 -99880412 - MER30 DNA MER1_type 0 230 5 1501 181 7 45 chr6 82535652 82535940 -99879302 + AluJb SINE Alu 3 279 -33 189 0 0 0 chr6 82535942 82535963 -99879279 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 262 235 52 70 chr6 82536416 82536531 -99878711 + L1P LINE L1 4879 4991 -1155 253 297 212 39 chr6 82536643 82536973 -99878269 + L1MC/D LINE L1 5446 5832 -1976 2164 119 0 0 chr6 82537640 82537934 -99877308 + AluSx SINE Alu 1 294 -18 2205 73 17 11 chr6 82537939 82538226 -99877016 + AluSp SINE Alu 6 294 -19 675 332 134 17 chr6 82538807 82539454 -99875788 - L2 LINE L2 -1 3312 2578 231 205 0 0 chr6 82539519 82539558 -99875684 + MER3 DNA MER1_type 44 82 -127 652 196 30 96 chr6 82539570 82539620 -99875622 - MER3 DNA MER1_type -23 186 134 1700 142 16 65 chr6 82539620 82539930 -99875312 + AluJb SINE Alu 1 295 -17 652 196 30 96 chr6 82539930 82540078 -99875164 - MER3 DNA MER1_type -75 134 1 306 349 224 14 chr6 82540081 82540966 -99874276 - L2 LINE L2 -1147 2167 1055 527 217 137 43 chr6 82540966 82541127 -99874115 - MER69A DNA AcHobo 0 177 2 306 349 224 14 chr6 82541127 82541221 -99874021 - L2 LINE L2 -2259 1055 982 198 0 0 0 chr6 82541615 82541637 -99873605 + (TTTTC)n Simple_repeat Simple_repeat 5 26 0 572 226 19 0 chr6 82541643 82541749 -99873493 - FLAM_A SINE Alu -34 108 1 2168 94 31 0 chr6 82542134 82542421 -99872821 + AluSx SINE Alu 1 296 -16 261 175 127 0 chr6 82542954 82543017 -99872225 - MARNA DNA Mariner -66 520 450 2181 118 0 13 chr6 82543051 82543364 -99871878 - AluSx SINE Alu -3 309 1 255 321 99 27 chr6 82543502 82543662 -99871580 + MARNA DNA Mariner 342 524 -62 1810 163 0 7 chr6 82543662 82543957 -99871285 + AluJb SINE Alu 6 298 -14 255 321 99 27 chr6 82543957 82544017 -99871225 + MARNA DNA Mariner 524 578 -8 21 89 0 0 chr6 82544377 82544433 -99870809 + AT_rich Low_complexity Low_complexity 1 56 0 2476 70 0 3 chr6 82545073 82545375 -99869867 - AluY SINE Alu -10 301 1 184 358 0 0 chr6 82545683 82545750 -99869492 - MIR SINE MIR -14 248 182 331 265 48 0 chr6 82545783 82545866 -99869376 - MIR SINE MIR -156 106 20 234 0 0 0 chr6 82546110 82546136 -99869106 + (A)n Simple_repeat Simple_repeat 1 26 0 30 59 0 0 chr6 82548041 82548092 -99867150 + AT_rich Low_complexity Low_complexity 1 51 0 894 198 24 24 chr6 82548335 82548542 -99866700 + MER3 DNA MER1_type 3 209 0 297 0 0 0 chr6 82548898 82548931 -99866311 + (CA)n Simple_repeat Simple_repeat 2 34 0 24 0 0 0 chr6 82548996 82549020 -99866222 + AT_rich Low_complexity Low_complexity 1 24 0 327 107 18 18 chr6 82549073 82549129 -99866113 + MER5B DNA MER1_type 1 56 -122 469 196 10 0 chr6 82549141 82549243 -99865999 - U13 snRNA snRNA -1 103 1 186 194 0 0 chr6 82549245 82549281 -99865961 + MER5B DNA MER1_type 35 70 -108 1900 162 0 3 chr6 82549542 82549851 -99865391 + AluJb SINE Alu 1 308 -4 540 152 0 0 chr6 82549871 82549950 -99865292 + 5S rRNA rRNA 1 79 -42 897 158 0 0 chr6 82549950 82550083 -99865159 + FLAM_C SINE Alu 1 133 0 450 265 210 0 chr6 82550208 82550408 -99864834 + MIR SINE MIR 21 262 0 219 88 0 0 chr6 82551114 82551148 -99864094 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2194 117 0 7 chr6 82551423 82551730 -99863512 + AluSc SINE Alu 1 305 -4 789 179 7 0 chr6 82552105 82552245 -99862997 - AluJb SINE Alu -18 294 154 192 343 30 59 chr6 82553215 82553384 -99861858 - L2 LINE L2 -212 3060 2897 2308 86 27 0 chr6 82555247 82555539 -99859703 + AluSx SINE Alu 1 300 -12 2115 131 0 0 chr6 82555607 82555904 -99859338 + AluSx SINE Alu 1 297 -15 2015 136 17 0 chr6 82556589 82556883 -99858359 - AluSx SINE Alu -13 299 1 206 338 14 0 chr6 82557016 82557090 -99858152 + MIR3 SINE MIR 130 204 -4 26 0 0 0 chr6 82557122 82557148 -99858094 + AT_rich Low_complexity Low_complexity 1 26 0 828 134 114 7 chr6 82560596 82560745 -99854497 - Tigger4(Zombi) DNA MER2_type 0 2731 2567 * 1862 158 57 25 chr6 82560741 82561095 -99854147 - Tigger4(Zombi) DNA MER2_type -2201 530 166 795 244 17 0 chr6 82561182 82561358 -99853884 + MIR SINE MIR 63 241 -21 4787 165 36 12 chr6 82561586 82562860 -99852382 + L1MB8 LINE L1 4865 6169 -9 1611 138 40 61 chr6 82563362 82563518 -99851724 - AluJb SINE Alu -22 290 141 207 69 0 0 chr6 82563518 82563547 -99851695 + (TG)n Simple_repeat Simple_repeat 2 30 0 1611 138 40 61 chr6 82563547 82563686 -99851556 - AluJb SINE Alu -171 141 1 807 226 128 18 chr6 82564359 82564585 -99850657 - MIR SINE MIR -10 252 2 204 159 68 0 chr6 82564797 82564841 -99850401 + MIR SINE MIR 121 167 -95 5085 89 20 0 chr6 82564982 82565690 -99849552 + LTR30 LTR ERV1 1 722 0 1279 190 9 0 chr6 82565876 82566097 -99849145 - MER58A DNA MER1_type -1 223 1 303 181 48 24 chr6 82567016 82567099 -99848143 + L1MD1 LINE L1 6156 6240 -2 342 142 80 71 chr6 82567238 82567351 -99847891 + L1MA7 LINE L1 6173 6286 -5 29 0 0 0 chr6 82568895 82568924 -99846318 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr6 82569137 82569173 -99846069 + AT_rich Low_complexity Low_complexity 1 36 0 2076 138 0 7 chr6 82569207 82569504 -99845738 - AluSx SINE Alu -17 295 1 1763 164 0 4 chr6 82569528 82569796 -99845446 - AluJb SINE Alu -45 267 1 22 0 0 0 chr6 82571300 82571322 -99843920 + AT_rich Low_complexity Low_complexity 1 22 0 297 75 0 0 chr6 82572983 82573023 -99842219 + (TG)n Simple_repeat Simple_repeat 2 41 0 290 298 131 0 chr6 82573045 82573129 -99842113 + L2 LINE L2 3167 3261 -11 2102 120 0 17 chr6 82573500 82573800 -99841442 - AluJo SINE Alu -17 295 1 2250 103 0 7 chr6 82574746 82575047 -99840195 + AluSg SINE Alu 1 299 -11 239 204 20 0 chr6 82575078 82575127 -99840115 - L2 LINE L2 -8 3305 3256 2285 91 7 0 chr6 82575719 82576027 -99839215 + AluY SINE Alu 1 310 -1 2320 103 0 0 chr6 82576247 82576557 -99838685 + AluSg SINE Alu 1 310 0 2037 128 0 13 chr6 82576850 82577155 -99838087 + AluSx SINE Alu 1 301 -11 704 144 0 25 chr6 82577692 82577810 -99837432 + FLAM_A SINE Alu 16 130 -12 229 354 143 11 chr6 82577847 82578022 -99837220 + MIR SINE MIR 34 231 -31 356 375 87 40 chr6 82578077 82578324 -99836918 - L2 LINE L2 -338 2976 2703 2385 106 0 0 chr6 82578324 82578636 -99836606 + AluSx SINE Alu 1 312 0 356 375 87 40 chr6 82578636 82578767 -99836475 - L2 LINE L2 -611 2703 2580 308 315 96 7 chr6 82578780 82578926 -99836316 + Charlie2 DNA MER1_type 35 193 -2589 289 232 232 0 chr6 82578974 82579069 -99836173 - L2 LINE L2 -1 3312 3196 218 343 55 0 chr6 82579114 82579187 -99836055 - L2 LINE L2 -280 3033 2957 21 0 0 0 chr6 82579446 82579467 -99835775 + AT_rich Low_complexity Low_complexity 1 21 0 2174 104 3 3 chr6 82579475 82579764 -99835478 + AluSx SINE Alu 1 289 -23 612 178 19 3 chr6 82579782 82579909 -99835333 + L1PA16 LINE L1 6039 6165 0 1718 142 7 35 chr6 82580674 82580963 -99834279 + AluJo SINE Alu 1 281 -31 223 47 0 47 chr6 82580967 82581010 -99834232 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2174 141 44 105 chr6 82581375 82581899 -99833343 + L1MB2 LINE L1 5671 6162 -9 1554 214 0 20 chr6 82581915 82582218 -99833024 + AluJo SINE Alu 2 298 -14 1572 169 45 10 chr6 82583295 82583585 -99831657 - AluJo SINE Alu -8 304 5 320 361 33 0 chr6 82586360 82586482 -99828760 - L2 LINE L2 -5 3308 3183 192 368 53 23 chr6 82587067 82587200 -99828042 - MIR3 SINE MIR -13 195 59 932 113 0 0 chr6 82588276 82588400 -99826842 - AluSg/x SINE Alu -12 300 177 21 0 0 0 chr6 82589330 82589351 -99825891 + AT_rich Low_complexity Low_complexity 1 21 0 2119 133 0 0 chr6 82589593 82589894 -99825348 - AluSq SINE Alu -10 303 3 2113 125 10 0 chr6 82590148 82590444 -99824798 + AluSx SINE Alu 1 299 -13 210 71 0 0 chr6 82590628 82590656 -99824586 + (TG)n Simple_repeat Simple_repeat 1 28 0 198 244 210 70 chr6 82591294 82591523 -99823719 - MIR3 SINE MIR 0 262 2 22 70 0 0 chr6 82591908 82591951 -99823291 + AT_rich Low_complexity Low_complexity 1 43 0 22 88 0 0 chr6 82592703 82592760 -99822482 + AT_rich Low_complexity Low_complexity 1 57 0 2150 129 0 0 chr6 82592811 82593114 -99822128 + AluSq SINE Alu 3 305 -8 24 0 0 0 chr6 82593523 82593547 -99821695 + AT_rich Low_complexity Low_complexity 1 24 0 255 31 0 0 chr6 82593550 82593582 -99821660 + (TG)n Simple_repeat Simple_repeat 2 33 0 2137 124 0 3 chr6 82594536 82594842 -99820400 + AluSq SINE Alu 1 305 -8 241 206 111 71 chr6 82595122 82595150 -99820092 - MER112 DNA MER1_type -48 212 187 1683 172 39 3 chr6 82595150 82595435 -99819807 - AluJo SINE Alu -17 295 1 241 206 111 71 chr6 82595435 82595532 -99819710 - MER112 DNA MER1_type -73 187 82 242 232 36 0 chr6 82595621 82595677 -99819565 - MER112 DNA MER1_type -202 58 1 21 0 0 0 chr6 82596100 82596121 -99819121 + AT_rich Low_complexity Low_complexity 1 21 0 2490 70 0 0 chr6 82597884 82598183 -99817059 - AluY SINE Alu -12 299 1 406 245 11 0 chr6 82598586 82598703 -99816539 - L1ME2 LINE L1 0 6170 6051 602 237 104 0 chr6 82598708 82598843 -99816399 + FRAM SINE Alu 8 156 -20 850 204 161 15 chr6 82598844 82599118 -99816124 - L1ME2 LINE L1 -139 6025 5712 886 316 137 12 chr6 82599675 82600179 -99815063 + L2 LINE L2 2163 2729 -585 1486 165 40 50 chr6 82600326 82600623 -99814619 - AluJb SINE Alu -14 298 5 248 244 0 11 chr6 82600653 82600722 -99814520 + AluJo SINE Alu 2 43 -260 6894 154 119 19 chr6 82600722 82602052 -99813190 + L1M1 LINE L1 39 1500 -6065 624 78 107 0 chr6 82602050 82602153 -99813089 + L1M1 LINE L1 2999 3112 -4453 * 4398 119 32 8 chr6 82602161 82602885 -99812357 + L1MA3 LINE L1 5554 6294 -11 24 0 0 0 chr6 82602890 82602914 -99812328 + AT_rich Low_complexity Low_complexity 1 24 0 1553 179 0 35 chr6 82602914 82603204 -99812038 + AluJo SINE Alu 33 312 0 390 326 72 22 chr6 82603206 82603344 -99811898 + MIR SINE MIR 47 191 -71 777 314 69 48 chr6 82603671 82604175 -99811067 + HAL1 LINE L1 1 515 -1992 984 171 0 0 chr6 82604202 82604348 -99810894 - FRAM SINE Alu -30 146 1 1720 156 15 74 chr6 82604349 82604558 -99810684 + MER31B LTR ERV1 6 226 -240 4583 141 29 51 chr6 82604558 82605106 -99810136 + MER4D LTR ERV1 3 524 -379 1915 124 3 65 chr6 82605106 82605429 -99809813 - AluSq SINE Alu -10 303 1 4583 141 29 51 chr6 82605429 82605801 -99809441 + MER4D LTR ERV1 524 903 0 1720 156 15 74 chr6 82605801 82605933 -99809309 + MER31B LTR ERV1 226 322 -144 3433 122 5 69 chr6 82605933 82606574 -99808668 + MER4A LTR ERV1 1 600 0 1720 156 15 74 chr6 82606574 82606634 -99808608 + MER31B LTR ERV1 322 384 -82 1339 231 33 46 chr6 82606659 82607049 -99808193 + MLT1B LTR MaLR 1 385 -5 349 167 14 14 chr6 82607073 82607145 -99808097 + MER31B LTR ERV1 395 466 0 1569 101 26 0 chr6 82607232 82607460 -99807782 + MER41A LTR ERV1 2 235 -319 1342 91 30 10 chr6 82607459 82607656 -99807586 + MER41B LTR ERV1 435 635 0 * 718 234 63 75 chr6 82607793 82608127 -99807115 + HAL1 LINE L1 1286 1615 -892 3637 70 38 14 chr6 82608224 82608723 -99806519 - MER9 LTR ERVK 0 511 1 1491 126 0 14 chr6 82608806 82609021 -99806221 - AluSg/x SINE Alu -14 298 87 307 282 8 81 chr6 82609879 82609905 -99805337 - L1MC4 LINE L1 -1314 6728 6702 1937 112 63 3 chr6 82609905 82610191 -99805051 + AluSg SINE Alu 1 303 -7 307 282 8 81 chr6 82610191 82610288 -99804954 - L1MC4 LINE L1 -1340 6702 6614 306 300 0 11 chr6 82610275 82610365 -99804877 + L1MC4 LINE L1 6615 6703 -1339 * 458 274 22 15 chr6 82610505 82610640 -99804602 - L2 LINE L2 0 3313 3178 327 224 0 0 chr6 82610646 82610713 -99804529 - L2 LINE L2 -65 3248 3182 1371 217 0 8 chr6 82611075 82611342 -99803900 + AluJb SINE Alu 47 311 -1 346 195 104 0 chr6 82611609 82611686 -99803556 - L2 LINE L2 -9 3263 3179 1774 164 7 23 chr6 82612438 82612742 -99802500 + AluJb SINE Alu 3 301 -11 2240 118 0 0 chr6 82613029 82613333 -99801909 - AluSx SINE Alu -8 304 1 2367 92 0 0 chr6 82613566 82613861 -99801381 - AluSx SINE Alu -17 295 1 314 311 39 15 chr6 82613993 82614199 -99801043 + L2 LINE L2 1436 1646 -1668 942 131 24 72 chr6 82614202 82614414 -99800828 + THE1C LTR MaLR 198 375 0 193 205 0 26 chr6 82614414 82614453 -99800789 + L2 LINE L2 2191 2228 -1086 1878 165 0 7 chr6 82614494 82614785 -99800457 + AluSx SINE Alu 1 289 -23 543 281 16 5 chr6 82614793 82614978 -99800264 + L2 LINE L2 2233 2419 -895 355 82 0 0 chr6 82614978 82615027 -99800215 - Alu SINE Alu -3 299 251 242 278 0 0 chr6 82615392 82615446 -99799796 - L2 LINE L2 -4 3268 3215 2231 104 0 3 chr6 82616110 82616408 -99798834 - AluSq SINE Alu -14 299 3 2858 227 24 3 chr6 82616408 82617081 -99798161 - L1 LINE L1 -1655 4491 3805 2022 180 14 5 chr6 82617103 82617536 -99797706 + L1PA16 LINE L1 4718 5154 -992 1374 98 0 65 chr6 82617534 82617683 -99797559 + L1PA16 LINE L1 5463 5591 -575 * 2152 143 0 0 chr6 82617683 82617991 -99797251 + AluSx SINE Alu 1 308 -4 1374 98 0 65 chr6 82617991 82618087 -99797155 + L1PA16 LINE L1 5591 5692 -474 2109 125 0 16 chr6 82618126 82618438 -99796804 + AluSx SINE Alu 3 309 -3 3002 114 14 35 chr6 82618455 82618750 -99796492 + L1PA16 LINE L1 5676 5959 -207 882 148 0 22 chr6 82618750 82618885 -99796357 + FLAM_C SINE Alu 2 133 0 3002 114 14 35 chr6 82618885 82619081 -99796161 + L1PA16 LINE L1 5959 6157 -9 207 88 0 0 chr6 82620751 82620785 -99794457 + (T)n Simple_repeat Simple_repeat 1 34 0 313 244 67 33 chr6 82620806 82620896 -99794346 - HAL1 LINE L1 -615 1892 1800 630 311 81 37 chr6 82620902 82621471 -99793771 - HAL1 LINE L1 -847 1660 1067 326 336 129 31 chr6 82621477 82621733 -99793509 - HAL1 LINE L1 -1570 937 657 2229 102 24 0 chr6 82621900 82622194 -99793048 - AluSx SINE Alu -11 301 1 1703 192 0 26 chr6 82622431 82622733 -99792509 + AluJo SINE Alu 7 300 -12 192 250 38 88 chr6 82623065 82623145 -99792097 - L3 LINE CR1 -1351 226 151 21 0 0 0 chr6 82624036 82624057 -99791185 + AT_rich Low_complexity Low_complexity 1 21 0 2224 84 3 3 chr6 82624284 82624571 -99790671 + AluY SINE Alu 1 287 -24 2122 108 10 16 chr6 82624837 82625142 -99790100 + AluSx SINE Alu 1 303 -9 417 240 0 54 chr6 82625243 82625372 -99789870 + L1ME LINE L1 5547 5668 -453 2391 162 61 4 chr6 82625421 82625897 -99789345 + L1MA6 LINE L1 5798 6300 0 571 239 0 31 chr6 82626190 82626349 -99788893 + MER104 DNA Tc2 27 180 0 948 163 0 0 chr6 82626779 82626920 -99788322 + AluSq/x SINE Alu 1 141 -171 1227 132 81 5 chr6 82627140 82627337 -99787905 - AluSg/x SINE Alu -16 294 83 1760 214 98 31 chr6 82627389 82627457 -99787785 - L1ME1 LINE L1 -5 6161 6099 1943 153 10 3 chr6 82627457 82627751 -99787491 + AluJb SINE Alu 1 296 -16 294 29 0 0 chr6 82627751 82627786 -99787456 + (TA)n Simple_repeat Simple_repeat 1 35 0 495 0 0 0 chr6 82627785 82627840 -99787402 + (GA)n Simple_repeat Simple_repeat 2 56 0 1760 214 98 31 chr6 82627786 82628402 -99786840 - L1ME1 LINE L1 -66 6100 5435 1199 188 107 73 chr6 82628412 82628906 -99786336 + L1MC4 LINE L1 7532 8042 0 1089 249 68 71 chr6 82628939 82629291 -99785951 + L1M4 LINE L1 4458 4809 -1337 2183 93 3 36 chr6 82629291 82629592 -99785650 + AluSx SINE Alu 1 291 -21 1089 249 68 71 chr6 82629592 82629857 -99785385 + L1M4 LINE L1 4809 5073 -1073 219 231 0 15 chr6 82629865 82629892 -99785350 + A-rich Low_complexity Low_complexity 4 30 -37 695 159 166 7 chr6 82629892 82630043 -99785199 + FAM SINE Alu 1 175 0 219 231 0 15 chr6 82630043 82630080 -99785162 + A-rich Low_complexity Low_complexity 30 67 0 242 200 0 20 chr6 82630398 82630448 -99784794 + L2 LINE L2 3263 3311 -2 2607 48 0 13 chr6 82630713 82631024 -99784218 - AluY SINE Alu -3 308 2 2208 113 0 0 chr6 82631246 82631557 -99783685 + AluY SINE Alu 1 311 0 2072 134 0 16 chr6 82632300 82632607 -99782635 + AluJo SINE Alu 1 302 -10 2281 88 10 3 chr6 82633573 82633867 -99781375 - AluSg SINE Alu -4 306 11 201 236 81 88 chr6 82634126 82634274 -99780968 + L2 LINE L2 2937 3083 -189 2361 97 0 16 chr6 82634404 82634712 -99780530 + AluSx SINE Alu 1 303 -9 208 309 82 10 chr6 82634735 82634832 -99780410 + L2 LINE L2 3169 3272 0 2250 119 0 3 chr6 82635048 82635358 -99779884 - AluSx SINE Alu -3 309 1 2145 133 0 0 chr6 82636003 82636297 -99778945 - AluSx SINE Alu -18 294 1 621 228 0 0 chr6 82636320 82636434 -99778808 + AluJo/FLAM SINE Alu 3 116 -186 1976 156 16 16 chr6 82636434 82636742 -99778500 - AluJb SINE Alu -4 308 1 21 57 0 0 chr6 82636745 82636780 -99778462 + AT_rich Low_complexity Low_complexity 1 35 0 2382 60 0 10 chr6 82636905 82637204 -99778038 - AluY SINE Alu -15 296 1 581 220 8 61 chr6 82637362 82637494 -99777748 + FLAM_A SINE Alu 4 128 -5 1748 196 0 28 chr6 82637780 82638101 -99777141 + AluJo SINE Alu 1 312 0 359 355 88 20 chr6 82638449 82638700 -99776542 + L1MC4a LINE L1 5688 5955 -1853 710 195 0 0 chr6 82638704 82638827 -99776415 + FLAM_C SINE Alu 1 123 -20 303 28 0 0 chr6 82638827 82638863 -99776379 + (CA)n Simple_repeat Simple_repeat 2 37 0 218 351 13 0 chr6 82639298 82639375 -99775867 - L2 LINE L2 -2 3311 3234 2218 94 7 3 chr6 82640425 82640737 -99774505 + AluSx SINE Alu 3 315 0 336 283 38 9 chr6 82641857 82641963 -99773279 + L2 LINE L2 3134 3242 -30 22 0 0 0 chr6 82643481 82643503 -99771739 + AT_rich Low_complexity Low_complexity 1 22 0 343 255 51 20 chr6 82643687 82643785 -99771457 - MER5B DNA MER1_type -19 159 59 2026 139 10 19 chr6 82644215 82644525 -99770717 + AluJb SINE Alu 1 307 -5 2030 148 0 0 chr6 82644740 82645038 -99770204 + AluSx SINE Alu 1 298 -14 873 240 40 9 chr6 82645187 82645412 -99769830 - MSTB LTR MaLR 0 426 195 3106 162 69 3 chr6 82645412 82645598 -99769644 + MSTB-int LTR MaLR 1007 1179 -472 2230 110 3 0 chr6 82645598 82645897 -99769345 - AluY SINE Alu -11 300 1 3106 162 69 3 chr6 82645897 82646304 -99768938 + MSTB-int LTR MaLR 1179 1639 -12 2408 161 31 10 chr6 82646305 82646721 -99768521 + MSTB LTR MaLR 2 426 0 2078 117 0 3 chr6 82646835 82647193 -99768049 + AluSx SINE Alu 1 357 0 457 194 75 0 chr6 82647358 82647451 -99767791 + U6 snRNA snRNA 1 100 -7 482 147 13 0 chr6 82647496 82647571 -99767671 + FLAM_A SINE Alu 23 98 -44 1706 169 20 3 chr6 82647700 82647996 -99767246 + AluJb SINE Alu 1 301 -11 26 64 0 0 chr6 82648080 82648127 -99767115 + AT_rich Low_complexity Low_complexity 1 47 0 2190 117 3 3 chr6 82648191 82648489 -99766753 + AluSx SINE Alu 1 298 -14 891 245 56 51 chr6 82648681 82649094 -99766148 + MER20B DNA MER1_type 246 660 -123 234 236 18 0 chr6 82649097 82649152 -99766090 + (TA)n Simple_repeat Simple_repeat 1 56 0 2214 118 3 0 chr6 82649170 82649476 -99765766 - AluSq SINE Alu -6 307 1 1649 188 14 14 chr6 82649479 82649771 -99765471 - AluJo SINE Alu -20 292 1 764 174 8 0 chr6 82649801 82649922 -99765320 - FRAM SINE Alu -62 114 1 2405 111 0 0 chr6 82650040 82650346 -99764896 + AluSx SINE Alu 1 306 -6 215 344 73 21 chr6 82650414 82650502 -99764740 + MIR SINE MIR 21 116 -92 2034 87 0 8 chr6 82650502 82650768 -99764474 - AluY SINE Alu -14 297 34 563 138 103 9 chr6 82650783 82650899 -99764343 + Charlie1 DNA MER1_type 2635 2761 0 793 217 19 0 chr6 82651309 82651470 -99763772 + FRAM SINE Alu 2 165 -11 2305 84 10 7 chr6 82652194 82652490 -99762752 + AluSg SINE Alu 2 298 -12 881 143 30 8 chr6 82652495 82652628 -99762614 + AluJo SINE Alu 1 136 -176 714 281 71 0 chr6 82653056 82653280 -99761962 + MIR SINE MIR 22 261 -1 2325 82 0 20 chr6 82653280 82653585 -99761657 + AluY SINE Alu 1 299 -12 336 24 0 0 chr6 82653883 82653924 -99761318 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr6 82654085 82654106 -99761136 + AT_rich Low_complexity Low_complexity 1 21 0 2263 102 0 0 chr6 82656347 82656642 -99758600 + AluSx SINE Alu 1 295 -17 2183 75 7 0 chr6 82656759 82657057 -99758185 + AluY SINE Alu 1 300 0 1681 102 0 0 chr6 82657328 82657544 -99757698 + AluSg/x SINE Alu 88 303 -7 740 227 64 33 chr6 82657633 82657848 -99757394 - MIR SINE MIR -1 261 42 230 296 0 0 chr6 82658103 82658157 -99757085 + (TA)n Simple_repeat Simple_repeat 1 54 0 248 111 22 0 chr6 82658171 82658216 -99757026 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 248 228 0 33 chr6 82658227 82658319 -99756923 - L1MC4 LINE L1 -1339 6703 6615 264 258 17 8 chr6 82658323 82658443 -99756799 + (CATATA)n Simple_repeat Simple_repeat 2 122 0 315 275 0 22 chr6 82658445 82658536 -99756706 - L1MC4 LINE L1 -1339 6703 6615 313 270 0 22 chr6 82658542 82658631 -99756611 + L1MC4 LINE L1 6614 6700 -1342 449 263 108 21 chr6 82658693 82658884 -99756358 + MIR SINE MIR 58 262 0 2303 101 0 0 chr6 82658884 82659182 -99756060 + AluSx SINE Alu 1 298 -14 774 177 0 0 chr6 82659276 82659400 -99755842 - FLAM_A SINE Alu -6 127 4 350 224 82 31 chr6 82659690 82659788 -99755454 + L2 LINE L2 3169 3271 -1 1844 148 10 20 chr6 82660272 82660569 -99754673 - AluJb SINE Alu -18 294 1 282 273 23 34 chr6 82660576 82660664 -99754578 + MIR SINE MIR 104 190 -72 203 250 0 0 chr6 82660845 82660885 -99754357 + L2 LINE L2 3265 3304 -9 2249 115 3 0 chr6 82660970 82661274 -99753968 - AluSx SINE Alu -3 309 5 1486 186 43 11 chr6 82661755 82662035 -99753207 + AluSx SINE Alu 1 289 -23 290 181 0 14 chr6 82662036 82662108 -99753134 + (TA)n Simple_repeat Simple_repeat 2 72 0 254 315 168 8 chr6 82662950 82663094 -99752148 + MIR SINE MIR 3 159 -49 2011 119 14 0 chr6 82663247 82663532 -99751710 + AluSx SINE Alu 23 311 -1 24 32 0 0 chr6 82663564 82663595 -99751647 + AT_rich Low_complexity Low_complexity 1 31 0 1694 94 121 11 chr6 82664637 82664902 -99750340 + AluSx SINE Alu 1 294 -18 2193 91 0 7 chr6 82665122 82665419 -99749823 + AluSg1 SINE Alu 1 295 -14 25 0 0 0 chr6 82666276 82666301 -99748941 + GC_rich Low_complexity Low_complexity 1 25 0 38 93 0 0 chr6 82666348 82666456 -99748786 + GC_rich Low_complexity Low_complexity 1 108 0 752 153 0 69 chr6 82667595 82667739 -99747503 - AluJo SINE Alu -176 136 3 514 378 63 9 chr6 82667781 82668130 -99747112 + L2 LINE L2 2461 2828 -486 2213 120 0 13 chr6 82668171 82668487 -99746755 - AluSx SINE Alu 0 312 1 1736 179 3 20 chr6 82668488 82668785 -99746457 - AluJo SINE Alu -20 292 1 276 235 109 76 chr6 82669249 82669368 -99745874 + L2 LINE L2 3170 3292 -21 1556 133 107 22 chr6 82669462 82669733 -99745509 + AluJb SINE Alu 1 294 -18 1700 161 78 0 chr6 82669814 82670136 -99745106 - MER7A DNA MER2_type 0 346 2 902 145 13 0 chr6 82671696 82671848 -99743394 + MER31A LTR ERV1 1 154 -331 1678 162 11 18 chr6 82671879 82672163 -99743079 - AluJb SINE Alu -30 282 1 2195 97 3 10 chr6 82672244 82672543 -99742699 + AluSq SINE Alu 1 297 -16 1856 180 3 3 chr6 82672568 82672908 -99742334 - AluJo SINE Alu 0 340 1 475 237 0 8 chr6 82673234 82673352 -99741890 + LTR67 LTR ERVL 430 546 -11 2329 89 3 0 chr6 82673659 82673951 -99741291 - AluY SINE Alu -17 294 2 2125 126 10 3 chr6 82673956 82674257 -99740985 - AluSx SINE Alu -9 303 1 2499 85 0 0 chr6 82674328 82674633 -99740609 + AluSq SINE Alu 1 305 -8 633 159 61 30 chr6 82674801 82674933 -99740309 + AluJo SINE Alu 1 136 -176 22 0 0 0 chr6 82675056 82675078 -99740164 + AT_rich Low_complexity Low_complexity 1 22 0 2052 116 57 28 chr6 82675213 82675567 -99739675 + THE1B LTR MaLR 1 364 0 388 229 119 0 chr6 82675687 82675811 -99739431 + MIR SINE MIR 62 200 -62 1256 193 41 16 chr6 82676002 82676246 -99738996 + AluJb SINE Alu 47 296 -16 1725 151 6 53 chr6 82676248 82676567 -99738675 + AluJo SINE Alu 1 304 -8 2354 90 3 0 chr6 82676791 82677091 -99738151 + AluSx SINE Alu 1 301 -11 1033 195 0 0 chr6 82677131 82677290 -99737952 + FRAM SINE Alu 1 157 -19 240 163 0 0 chr6 82677312 82677355 -99737887 + (TG)n Simple_repeat Simple_repeat 2 44 0 1859 144 7 0 chr6 82677356 82677626 -99737616 - AluSx SINE Alu -22 290 19 21 0 0 0 chr6 82677670 82677691 -99737551 + AT_rich Low_complexity Low_complexity 1 21 0 210 125 0 125 chr6 82678162 82678218 -99737024 + L2 LINE L2 3220 3268 -4 2377 88 0 0 chr6 82678286 82678581 -99736661 - AluSc SINE Alu -14 295 1 22 56 0 0 chr6 82678697 82678733 -99736509 + AT_rich Low_complexity Low_complexity 1 36 0 1885 148 3 3 chr6 82678792 82679082 -99736160 - AluJb SINE Alu -5 307 18 364 247 79 33 chr6 82679805 82679969 -99735273 - MLT1H LTR MaLR -232 177 19 348 202 36 24 chr6 82679985 82680069 -99735173 + L1MC4 LINE L1 6612 6696 -1346 2193 130 0 16 chr6 82680134 82680442 -99734800 + AluSx SINE Alu 1 303 -9 575 134 0 98 chr6 82680458 82680553 -99734689 + FLAM_A SINE Alu 24 108 -203 2066 133 39 120 chr6 82680553 82680972 -99734270 + MSTA LTR MaLR 1 380 -48 2220 108 7 0 chr6 82680972 82681269 -99733973 - AluSx SINE Alu -13 299 1 2066 133 39 120 chr6 82681269 82681315 -99733927 + MSTA LTR MaLR 380 428 0 575 134 0 98 chr6 82681315 82681331 -99733911 + FLAM_A SINE Alu 108 124 -187 313 233 53 68 chr6 82681358 82681491 -99733751 + L1ME3A LINE L1 6013 6143 -27 2376 229 85 11 chr6 82681526 82682151 -99733091 - MER21B LTR ERV1 -52 811 141 1893 146 0 0 chr6 82682266 82682541 -99732701 - AluJb SINE Alu -35 277 3 2319 91 10 0 chr6 82682590 82682888 -99732354 + AluSq SINE Alu 1 301 -12 584 200 7 57 chr6 82682892 82683032 -99732210 + FLAM_A SINE Alu 1 133 0 2039 140 0 0 chr6 82683611 82683940 -99731302 + AluSx SINE Alu 1 329 0 2049 122 24 3 chr6 82684200 82684494 -99730748 - AluSx SINE Alu -12 300 1 224 30 30 0 chr6 82684557 82684590 -99730652 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 801 204 0 7 chr6 82684596 82684743 -99730499 - FRAM SINE Alu -30 146 1 332 326 166 26 chr6 82684783 82685314 -99729928 - L1M4 LINE L1 -1530 4616 4012 27 20 0 41 chr6 82685425 82685454 -99729788 + AT_rich Low_complexity Low_complexity 1 29 -18 1386 175 38 67 chr6 82685454 82685768 -99729474 - AluJb SINE Alu -7 305 1 27 20 0 41 chr6 82685768 82685787 -99729455 + AT_rich Low_complexity Low_complexity 29 47 0 28 0 0 0 chr6 82685838 82685866 -99729376 + AT_rich Low_complexity Low_complexity 1 28 0 496 268 112 37 chr6 82685919 82686035 -99729207 - L1M4 LINE L1 -2681 3465 3359 2019 110 50 0 chr6 82686035 82686317 -99728925 - AluSx SINE Alu -16 296 1 496 268 112 37 chr6 82686317 82686469 -99728773 - L1M4 LINE L1 -2787 3359 3177 23 33 0 0 chr6 82686575 82686605 -99728637 + AT_rich Low_complexity Low_complexity 1 30 0 2320 94 3 3 chr6 82686759 82687057 -99728185 - AluSx SINE Alu -14 298 1 21 0 0 0 chr6 82687198 82687219 -99728023 + AT_rich Low_complexity Low_complexity 1 21 0 1916 152 3 0 chr6 82687317 82687600 -99727642 + AluJb SINE Alu 1 284 -28 312 120 0 0 chr6 82687600 82687650 -99727592 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 1921 169 0 0 chr6 82687679 82687981 -99727261 - AluJb SINE Alu -10 302 1 943 236 171 19 chr6 82687982 82688240 -99727002 - AluSg SINE Alu -3 297 1 2224 119 0 3 chr6 82688560 82688862 -99726380 + AluSx SINE Alu 1 301 -11 254 298 113 28 chr6 82688866 82689179 -99726063 + L1MC/D LINE L1 5400 5737 -459 428 278 99 58 chr6 82689188 82689570 -99725672 + MLT1I LTR MaLR 10 407 -2 570 250 8 0 chr6 82690086 82690206 -99725036 + MER5A DNA MER1_type 47 167 -22 2436 71 0 0 chr6 82690276 82690573 -99724669 - AluY SINE Alu -14 297 1 2251 112 13 0 chr6 82690606 82690909 -99724333 + AluSg SINE Alu 3 309 -1 25 51 0 0 chr6 82691285 82691324 -99723918 + AT_rich Low_complexity Low_complexity 1 39 0 927 203 0 0 chr6 82691410 82691568 -99723674 + FRAM SINE Alu 1 158 -18 1744 138 106 7 chr6 82691712 82691995 -99723247 - AluJo SINE Alu -1 311 1 272 308 87 56 chr6 82692154 82692279 -99722963 + L2 LINE L2 2642 2777 -537 2167 88 7 14 chr6 82692279 82692573 -99722669 - AluSq SINE Alu -21 292 1 272 308 87 56 chr6 82692573 82692642 -99722600 + L2 LINE L2 2777 2842 -472 308 244 33 11 chr6 82692891 82692981 -99722261 + MIR SINE MIR 124 215 -47 1943 105 14 48 chr6 82692983 82693126 -99722116 + AluSx SINE Alu 1 147 -169 2229 56 26 30 chr6 82693126 82693428 -99721814 + AluY SINE Alu 1 301 -10 1943 105 14 48 chr6 82693428 82693610 -99721632 + AluSx SINE Alu 147 316 0 316 284 263 45 chr6 82693659 82693994 -99721248 + L2 LINE L2 2904 3311 -2 704 190 0 25 chr6 82694189 82694310 -99720932 - FLAM_A SINE Alu -19 123 6 2378 78 0 3 chr6 82694336 82694632 -99720610 - AluY SINE Alu -16 295 1 263 170 57 0 chr6 82695233 82695286 -99719956 - MER103 DNA DNA -65 101 46 1861 141 0 52 chr6 82695419 82695725 -99719517 + AluJb SINE Alu 1 290 -22 272 272 185 43 chr6 82695738 82695900 -99719342 - L3 LINE CR1 -1226 351 167 229 168 346 47 chr6 82695929 82696036 -99719206 - MER46A DNA MER2_type -94 142 4 * 774 175 117 6 chr6 82696036 82696120 -99719122 + MER46A DNA MER2_type 134 236 0 971 175 0 0 chr6 82696412 82696566 -99718676 + AluJb SINE Alu 147 300 -12 305 303 182 10 chr6 82700234 82700333 -99714909 - L2 LINE L2 -7 3265 3150 733 232 68 0 chr6 82700343 82700533 -99714709 + MER58A DNA MER1_type 20 222 -2 478 305 86 59 chr6 82700637 82700975 -99714267 - L2 LINE L2 -230 3042 2702 260 327 121 12 chr6 82701261 82701426 -99713816 - L2 LINE L2 -1427 1887 1705 1511 201 28 11 chr6 82702411 82702695 -99712547 - AluJb SINE Alu -23 289 1 545 215 22 30 chr6 82702984 82703119 -99712123 - FLAM_C SINE Alu -7 136 3 2067 128 0 0 chr6 82703545 82703833 -99711409 + AluSx SINE Alu 1 288 -24 773 211 0 0 chr6 82705697 82705830 -99709412 - FLAM_A SINE Alu 0 133 1 205 269 0 0 chr6 82706236 82706288 -99708954 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 21 0 0 0 chr6 82706416 82706437 -99708805 + AT_rich Low_complexity Low_complexity 1 21 0 2264 113 6 3 chr6 82706595 82706906 -99708336 - AluSx SINE Alu 0 312 1 845 175 12 41 chr6 82706913 82707084 -99708158 - AluJo SINE Alu -20 292 127 1469 155 0 9 chr6 82707241 82707460 -99707782 + AluSg/x SINE Alu 83 299 -11 1453 185 37 37 chr6 82707533 82707830 -99707412 + AluJb SINE Alu 1 297 -15 1966 151 20 0 chr6 82707861 82708165 -99707077 + AluJo SINE Alu 1 310 -2 666 168 90 90 chr6 82709145 82709401 -99705841 - L1MB8 LINE L1 -2 6176 5921 1175 122 0 28 chr6 82709412 82709593 -99705649 + AluSg/x SINE Alu 135 310 0 204 67 0 0 chr6 82709943 82709973 -99705269 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2221 92 3 0 chr6 82709973 82710255 -99704987 - AluSg SINE Alu -27 283 1 3719 206 20 67 chr6 82710424 82711441 -99703801 + LTR5 LTR ERVK 1 969 0 412 205 51 118 chr6 82711664 82711738 -99703504 + L1ME1 LINE L1 5982 6059 -107 1823 174 0 10 chr6 82711738 82712037 -99703205 - AluSx SINE Alu -12 300 5 412 205 51 118 chr6 82712037 82712157 -99703085 + L1ME1 LINE L1 6059 6163 -3 881 129 8 0 chr6 82712213 82712345 -99702897 - FLAM_C SINE Alu 0 133 1 2252 110 0 7 chr6 82713001 82713301 -99701941 + AluSx SINE Alu 1 298 -14 1996 91 21 3 chr6 82713580 82713865 -99701377 + AluSx SINE Alu 1 290 -22 981 128 14 7 chr6 82714019 82714160 -99701082 - AluSq/x SINE Alu -171 142 1 25 75 0 0 chr6 82714197 82714250 -99700992 + AT_rich Low_complexity Low_complexity 1 53 0 736 175 0 29 chr6 82714255 82714392 -99700850 + FLAM_A SINE Alu 1 133 0 552 234 126 23 chr6 82714397 82714611 -99700631 + MER90 LTR ERV1 33 268 -307 770 247 31 0 chr6 82714614 82714808 -99700434 + MER90 LTR ERV1 413 612 -2 30 0 0 0 chr6 82715939 82715969 -99699273 + AT_rich Low_complexity Low_complexity 1 30 0 1830 163 3 3 chr6 82716115 82716410 -99698832 + AluJb SINE Alu 5 299 -13 232 342 92 40 chr6 82716454 82716606 -99698636 - MER5A DNA MER1_type -28 161 2 2312 96 3 3 chr6 82717131 82717434 -99697808 - AluSx SINE Alu -9 303 1 407 198 0 0 chr6 82717624 82717705 -99697537 + AluS SINE Alu 221 301 -1 2139 125 0 16 chr6 82717713 82718025 -99697217 + AluSx SINE Alu 1 307 -5 1009 215 66 13 chr6 82718067 82718458 -99696784 + L1MB8 LINE L1 5708 6173 -5 2163 98 3 17 chr6 82718619 82718914 -99696328 - AluSp SINE Alu -22 291 1 1972 131 3 25 chr6 82719459 82719773 -99695469 - AluSx SINE Alu -5 307 1 1146 163 9 37 chr6 82719871 82720086 -99695156 - AluJb SINE Alu -81 231 23 1755 165 3 23 chr6 82720250 82720553 -99694689 - AluJo SINE Alu -15 297 1 2396 77 3 0 chr6 82720735 82721033 -99694209 + AluSp SINE Alu 1 299 -14 2089 47 20 0 chr6 82721036 82721289 -99693953 + AluY SINE Alu 40 297 -14 372 347 35 12 chr6 82721348 82721521 -99693721 - L2 LINE L2 -385 2929 2753 2130 106 7 0 chr6 82721732 82722016 -99693226 + AluSx SINE Alu 1 286 -26 425 95 43 43 chr6 82722016 82722271 -99692971 + (TA)n Simple_repeat Simple_repeat 1 255 0 38 39 0 0 chr6 82722636 82722688 -99692554 + AT_rich Low_complexity Low_complexity 1 52 0 313 312 155 35 chr6 82723379 82723987 -99691255 + L1ME4a LINE L1 5255 5959 -162 30 0 0 0 chr6 82724398 82724428 -99690814 + AT_rich Low_complexity Low_complexity 1 30 0 285 275 21 0 chr6 82724679 82724788 -99690454 + L1MC/D LINE L1 5690 5800 -321 2207 95 0 20 chr6 82725051 82725345 -99689897 + AluSx SINE Alu 1 288 -24 390 299 120 55 chr6 82725790 82725922 -99689320 - MIR SINE MIR -26 236 83 2093 104 0 42 chr6 82725922 82726229 -99689013 - AluSq SINE Alu -19 294 1 390 299 120 55 chr6 82726229 82726313 -99688929 - MIR SINE MIR -179 83 6 35 24 0 0 chr6 82726765 82726807 -99688435 + AT_rich Low_complexity Low_complexity 1 42 0 2234 113 0 0 chr6 82727425 82727727 -99687515 + AluSg SINE Alu 2 303 -7 2436 80 0 0 chr6 82728808 82729108 -99686134 - AluY SINE Alu -11 300 1 1043 168 5 20 chr6 82729301 82729504 -99685738 - AluSg/x SINE Alu -9 303 104 719 114 137 104 chr6 82729929 82730140 -99685102 - L1M3 LINE L1 -592 5579 5362 1520 169 3 75 chr6 82730186 82730359 -99684883 - AluJo SINE Alu -14 298 157 2185 107 7 0 chr6 82730359 82730650 -99684592 - AluSp SINE Alu -20 293 1 1520 169 3 75 chr6 82730650 82730795 -99684447 - AluJo SINE Alu -155 157 3 37889 78 16 11 chr6 82730898 82737028 -99678214 + L1PA6 LINE L1 1 6154 0 1158 233 80 3 chr6 82737041 82737434 -99677808 - L1MEc LINE L1 -3498 3042 2656 586 151 17 0 chr6 82737432 82737551 -99677691 - L1MEc LINE L1 -5131 1409 1289 * 837 121 8 8 chr6 82737553 82737677 -99677565 - AluJo SINE Alu -178 134 11 274 154 46 31 chr6 82737699 82737764 -99677478 - L1MEc LINE L1 -5272 1271 1206 247 125 0 0 chr6 82737764 82737804 -99677438 - MSTA LTR MaLR 0 428 389 944 205 0 0 chr6 82737804 82737975 -99677267 + AluSg/x SINE Alu 130 300 -12 1838 161 124 11 chr6 82737975 82738329 -99676913 - MSTA LTR MaLR -34 394 1 1540 194 60 60 chr6 82738331 82738729 -99676513 - L1MEc LINE L1 -5355 1185 788 243 221 43 141 chr6 82739499 82739662 -99675580 - MER112 DNA MER1_type -8 252 106 239 263 0 0 chr6 82739948 82740005 -99675237 - MIR SINE MIR -32 230 174 1541 187 31 0 chr6 82740033 82740290 -99674952 - AluJo SINE Alu -35 277 13 324 284 73 9 chr6 82740330 82740439 -99674803 - MIR SINE MIR -115 147 32 22 56 0 0 chr6 82742140 82742176 -99673066 + AT_rich Low_complexity Low_complexity 1 36 0 332 279 74 63 chr6 82743118 82743308 -99671934 + MIR SINE MIR 40 231 -31 629 59 0 0 chr6 82744234 82744319 -99670923 - L1PA15 LINE L1 0 6165 6081 306 204 75 0 chr6 82744319 82744412 -99670830 - L1MC4 LINE L1 -798 7244 7145 1728 158 46 3 chr6 82744824 82745108 -99670134 + AluSq SINE Alu 1 296 -17 882 200 0 18 chr6 82745122 82745287 -99669955 + FRAM SINE Alu 10 171 -5 1827 161 25 0 chr6 82745402 82745688 -99669554 - AluSx SINE Alu -19 293 1 2223 112 0 3 chr6 82745810 82746114 -99669128 + AluSq SINE Alu 1 303 -10 2462 77 0 0 chr6 82746307 82746607 -99668635 + AluY SINE Alu 1 300 -11 2234 113 0 0 chr6 82747689 82747991 -99667251 - AluSg SINE Alu -7 303 2 35 24 0 0 chr6 82748609 82748651 -99666591 + AT_rich Low_complexity Low_complexity 1 42 0 385 299 120 55 chr6 82749103 82749187 -99666055 + MIR SINE MIR 6 83 -179 2078 107 0 42 chr6 82749187 82749495 -99665747 + AluSq SINE Alu 1 295 -18 385 299 120 55 chr6 82749495 82749627 -99665615 + MIR SINE MIR 83 236 -26 2207 95 0 20 chr6 82750072 82750366 -99664876 - AluSx SINE Alu -24 288 1 285 275 21 0 chr6 82750629 82750738 -99664504 - L1ME LINE L1 -321 5800 5690 30 0 0 0 chr6 82750989 82751019 -99664223 + AT_rich Low_complexity Low_complexity 1 30 0 465 333 208 15 chr6 82751489 82752038 -99663204 - L1MC4a LINE L1 -1899 5909 5255 38 39 0 0 chr6 82752729 82752781 -99662461 + AT_rich Low_complexity Low_complexity 1 52 0 437 94 43 43 chr6 82753146 82753405 -99661837 + (TA)n Simple_repeat Simple_repeat 1 259 0 2143 102 7 0 chr6 82753405 82753689 -99661553 - AluSx SINE Alu -26 286 1 367 344 31 12 chr6 82753913 82754073 -99661169 + L2 LINE L2 2767 2929 -385 2490 67 0 0 chr6 82754132 82754429 -99660813 - AluY SINE Alu -14 297 1 424 271 60 15 chr6 82754515 82754648 -99660594 + L2 LINE L2 3165 3303 -10 438 234 72 18 chr6 82754902 82755013 -99660229 + MIR SINE MIR 116 232 -30 224 255 0 0 chr6 82755013 82755064 -99660178 + (TA)n Simple_repeat Simple_repeat 1 51 0 549 219 97 0 chr6 82755161 82755275 -99659967 - FLAM_A SINE Alu -5 128 4 234 193 277 48 chr6 82755316 82755482 -99659760 - L1MC/D LINE L1 -1904 5904 5701 21 0 0 0 chr6 82755811 82755832 -99659410 + AT_rich Low_complexity Low_complexity 1 21 0 189 267 0 44 chr6 82756456 82756501 -99658741 - MIR3 SINE MIR -17 191 149 656 199 0 34 chr6 82757001 82757147 -99658095 + FLAM_C SINE Alu 3 143 0 2115 108 0 11 chr6 82757353 82757667 -99657575 - AluSq SINE Alu 0 311 1 233 250 94 0 chr6 82757758 82757822 -99657420 + L3b LINE CR1 1264 1333 -250 877 51 8 17 chr6 82757870 82757987 -99657255 + L1PA11 LINE L1 6042 6157 -17 1575 216 136 89 chr6 82758145 82758503 -99656739 + L1MC4 LINE L1 6461 6864 -1178 2064 124 7 0 chr6 82758503 82758802 -99656440 + AluSx SINE Alu 1 301 -11 1575 216 136 89 chr6 82758802 82759091 -99656151 + L1MC4 LINE L1 6864 7138 -904 1369 219 142 67 chr6 82759112 82759774 -99655468 + L1MC4 LINE L1 7325 8036 -6 1391 174 0 0 chr6 82760432 82760662 -99654580 - AluJo SINE Alu -2 310 81 29 70 0 0 chr6 82760809 82760866 -99654376 + AT_rich Low_complexity Low_complexity 1 57 0 24 32 0 0 chr6 82761086 82761117 -99654125 + AT_rich Low_complexity Low_complexity 1 31 0 345 254 157 22 chr6 82761696 82761830 -99653412 + L2 LINE L2 3121 3272 0 2327 84 17 0 chr6 82763196 82763494 -99651748 - AluSx SINE Alu -9 303 1 1623 200 49 74 chr6 82763633 82764125 -99651117 + L1ME2 LINE L1 5677 6154 -10 873 123 0 183 chr6 82764133 82764368 -99650874 + 7SK RNA RNA 2 193 0 1770 158 0 45 chr6 82765178 82765489 -99649753 - AluJb SINE Alu -15 297 1 2090 110 10 3 chr6 82766101 82766409 -99648833 + AluSp SINE Alu 1 310 -3 314 287 135 61 chr6 82766421 82766717 -99648525 + L1ME4a LINE L1 5261 5578 -543 318 50 0 0 chr6 82766717 82766757 -99648485 + (T)n Simple_repeat Simple_repeat 1 40 0 986 103 0 0 chr6 82766760 82766886 -99648356 - AluSq/x SINE Alu -186 126 1 360 225 88 19 chr6 82766890 82767050 -99648192 + L1ME4a LINE L1 5569 5739 -382 579 92 0 0 chr6 82767130 82767206 -99648036 + Alu SINE Alu 1 76 -233 1982 142 0 3 chr6 82767248 82767537 -99647705 - AluJb SINE Alu -14 298 11 320 256 122 29 chr6 82767607 82767779 -99647463 + L1ME4a LINE L1 5838 6025 -96 1538 203 17 7 chr6 82767790 82768090 -99647152 + AluJb SINE Alu 1 303 -9 2106 212 25 12 chr6 82768842 82769360 -99645882 + L1MC4a LINE L1 6967 7491 -317 1121 196 51 11 chr6 82769348 82769623 -99645619 + L1MD3 LINE L1 7700 7985 -10 * 2202 111 3 0 chr6 82769626 82769932 -99645310 + AluSg SINE Alu 1 307 -3 1951 141 3 29 chr6 82770110 82770416 -99644826 - AluSx SINE Alu -14 298 1 394 284 18 9 chr6 82770501 82770610 -99644632 + MIR SINE MIR 1 110 -152 2561 54 0 0 chr6 82772589 82772886 -99642356 - AluY SINE Alu -14 297 1 564 271 127 0 chr6 82772926 82773092 -99642150 - MIR SINE MIR -31 231 45 21 0 0 0 chr6 82773644 82773665 -99641577 + AT_rich Low_complexity Low_complexity 1 21 0 1988 133 3 17 chr6 82773806 82774107 -99641135 - AluSx SINE Alu -15 297 1 345 272 79 79 chr6 82774111 82774339 -99640903 - L1MEd LINE L1 -5555 564 337 974 187 169 51 chr6 82774494 82774656 -99640586 - L1MD3 LINE L1 -20 7975 7833 2101 136 7 0 chr6 82774656 82774966 -99640276 + AluSx SINE Alu 1 312 0 974 187 169 51 chr6 82774966 82775135 -99640107 - L1MD3 LINE L1 -162 7833 7605 603 187 46 135 chr6 82775139 82775264 -99639978 - L1MC4a LINE L1 -843 6942 6873 454 181 138 0 chr6 82775264 82775358 -99639884 - U6 snRNA snRNA 0 107 1 603 187 46 135 chr6 82775358 82775529 -99639713 - L1MC4a LINE L1 -912 6873 6688 1439 121 10 0 chr6 82775709 82775908 -99639334 - AluSg/x SINE Alu -17 293 93 204 226 12 36 chr6 82776216 82776300 -99638942 + T-rich Low_complexity Low_complexity 6 87 0 820 331 80 20 chr6 82776718 82777294 -99637948 + L2 LINE L2 2703 3312 -1 503 259 0 84 chr6 82777340 82777506 -99637736 - Tigger8 DNA MER2_type -435 231 80 841 178 0 7 chr6 82777598 82777744 -99637498 - AluJo SINE Alu -165 147 3 1882 164 6 0 chr6 82778280 82778615 -99636627 + L1MA5 LINE L1 5958 6294 -6 23 54 0 0 chr6 82778659 82778696 -99636546 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr6 82778870 82778899 -99636343 + AT_rich Low_complexity Low_complexity 1 29 0 361 238 12 0 chr6 82779039 82779123 -99636119 - Tigger7 DNA MER2_type 0 2487 2403 1275 184 56 4 chr6 82779128 82779361 -99635881 - Tigger7 DNA MER2_type -1302 1185 941 246 217 33 0 chr6 82779407 82779467 -99635775 + L1ME LINE L1 5714 5775 -346 1629 176 28 17 chr6 82780377 82780667 -99634575 - AluJb SINE Alu -19 293 1 243 0 0 0 chr6 82780791 82780818 -99634424 + (A)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr6 82780818 82780841 -99634401 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 371 37 0 19 chr6 82780840 82780894 -99634348 + (CA)n Simple_repeat Simple_repeat 2 54 0 1700 144 27 40 chr6 82781271 82781570 -99633672 + AluSx SINE Alu 4 298 -14 1480 182 37 24 chr6 82782258 82782554 -99632688 + AluJo SINE Alu 4 303 -9 1272 89 0 6 chr6 82784937 82785105 -99630137 + AluSq SINE Alu 56 222 -91 199 349 133 30 chr6 82785118 82785284 -99629958 + MIR3 SINE MIR 16 198 -10 406 225 0 0 chr6 82787095 82787166 -99628076 + Tigger7 DNA MER2_type 2 72 -661 234 213 0 33 chr6 82787167 82787228 -99628014 - L1ME LINE L1 -344 5777 5719 1386 129 52 17 chr6 82787288 82787521 -99627721 + Tigger7 DNA MER2_type 950 1190 -1297 1201 179 38 65 chr6 82787628 82787918 -99627324 - MER58B DNA MER1_type 0 341 60 235 258 333 0 chr6 82788000 82788093 -99627149 + L2 LINE L2 3190 3313 0 395 206 69 10 chr6 82788403 82788505 -99626737 + L1MEd LINE L1 947 1054 -5065 251 278 103 16 chr6 82788594 82788720 -99626522 + L1MEd LINE L1 1119 1255 -4864 899 101 65 7 chr6 82788874 82789013 -99626229 + LTR23 LTR ERV1 1 147 -290 2246 98 17 3 chr6 82789065 82789361 -99625881 + AluSx SINE Alu 1 300 -12 1388 121 10 108 chr6 82789386 82789693 -99625549 + LTR23 LTR ERV1 161 437 0 258 287 23 46 chr6 82789740 82789827 -99625415 + Charlie2 DNA MER1_type 23 107 -2675 2163 120 10 3 chr6 82789830 82790139 -99625103 + AluSx SINE Alu 1 311 -1 1078 226 163 102 chr6 82790142 82790405 -99624837 + Charlie2a DNA MER1_type 1694 1939 -923 1913 130 10 27 chr6 82790405 82790706 -99624536 + AluSx SINE Alu 1 296 -16 1078 226 163 102 chr6 82790706 82791434 -99623808 + Charlie2a DNA MER1_type 1939 2746 -116 1990 95 25 11 chr6 82791458 82791743 -99623499 + AluSg SINE Alu 1 289 -21 648 213 24 0 chr6 82791818 82791945 -99623297 - FLAM_C SINE Alu 0 133 4 2000 137 10 0 chr6 82792171 82792470 -99622772 + AluSx SINE Alu 4 305 -7 1382 254 48 20 chr6 82792604 82793045 -99622197 + L1MC4a LINE L1 5456 5908 -1900 21 0 0 0 chr6 82793073 82793094 -99622148 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 82793213 82793252 -99621990 + AT_rich Low_complexity Low_complexity 1 39 0 207 0 0 0 chr6 82793284 82793307 -99621935 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2163 128 0 0 chr6 82793540 82793846 -99621396 - AluSx SINE Alu -6 306 1 1931 146 7 10 chr6 82794018 82794320 -99620922 + AluSx SINE Alu 1 301 -11 507 208 36 54 chr6 82794386 82794453 -99620789 - MER104 DNA Tc2 -1718 180 113 816 178 8 0 chr6 82794453 82794582 -99620660 - FLAM_C SINE Alu -3 130 1 507 208 36 54 chr6 82794582 82794682 -99620560 - MER104 DNA Tc2 -1785 113 16 1225 227 156 31 chr6 82794685 82795288 -99619954 + L1MC4a LINE L1 5265 5942 -1866 23 0 0 0 chr6 82795385 82795408 -99619834 + AT_rich Low_complexity Low_complexity 1 23 0 778 181 161 5 chr6 82795623 82795816 -99619426 - MER58A DNA MER1_type 0 224 2 2256 120 0 3 chr6 82796849 82797157 -99618085 - AluSx SINE Alu -5 307 1 1573 183 73 12 chr6 82798786 82799130 -99616112 + MLT1A1 LTR MaLR 1 365 0 4436 231 99 83 chr6 82799231 82799319 -99615923 + L1MC3 LINE L1 5383 5468 -2317 1619 181 34 7 chr6 82799319 82799617 -99615625 - AluJo SINE Alu -6 306 1 4436 231 99 83 chr6 82799617 82799951 -99615291 + L1MC3 LINE L1 5468 5795 -1990 243 61 0 0 chr6 82799951 82799984 -99615258 + (CA)n Simple_repeat Simple_repeat 2 34 0 4436 231 99 83 chr6 82799984 82801218 -99614024 + L1MC3 LINE L1 5795 7008 -777 293 292 14 0 chr6 82801218 82801290 -99613952 + MLT1F1 LTR MaLR 36 108 -459 4436 231 99 83 chr6 82801290 82801845 -99613397 + L1MC3 LINE L1 7008 7708 -77 2375 76 6 19 chr6 82801845 82802162 -99613080 + AluSp SINE Alu 1 313 0 4436 231 99 83 chr6 82802162 82802231 -99613011 + L1MC3 LINE L1 7708 7774 -11 1727 147 7 50 chr6 82802243 82802543 -99612699 + AluJb SINE Alu 1 287 -25 2462 74 3 0 chr6 82802657 82802955 -99612287 - AluSg SINE Alu -11 299 1 270 252 87 101 chr6 82803256 82803474 -99611768 + HAL1 LINE L1 4 218 -2289 997 277 68 7 chr6 82803488 82803917 -99611325 + L1M4 LINE L1 3416 3870 -2276 2030 113 4 0 chr6 82803942 82804217 -99611025 + AluSx SINE Alu 1 276 -36 1870 134 0 25 chr6 82804256 82804540 -99610702 + AluSx SINE Alu 26 302 -10 3046 189 24 48 chr6 82804693 82804856 -99610386 + L1MC4 LINE L1 7159 7325 -717 2230 112 0 7 chr6 82804856 82805161 -99610081 + AluSg SINE Alu 1 303 -7 3046 189 24 48 chr6 82805161 82805760 -99609482 + L1MC4 LINE L1 7325 7902 -140 401 283 35 7 chr6 82805765 82805910 -99609332 - L1ME3A LINE L1 -341 5829 5681 1361 223 61 7 chr6 82805974 82806284 -99608958 - MER58B DNA MER1_type 0 341 15 2249 125 0 0 chr6 82806284 82806589 -99608653 - AluSx SINE Alu -5 307 3 288 269 8 30 chr6 82806602 82806723 -99608519 - L1ME3A LINE L1 -452 5669 5551 1385 171 9 0 chr6 82806807 82807035 -99608207 + AluJo SINE Alu 15 244 -68 255 148 66 98 chr6 82807190 82807251 -99607991 + MLT1F1 LTR MaLR 208 266 -289 319 227 15 0 chr6 82808730 82808796 -99606446 - MER81 DNA DNA -1 113 47 1987 121 0 56 chr6 82809335 82809658 -99605584 + AluSx SINE Alu 1 305 -7 731 261 21 16 chr6 82809888 82810076 -99605166 + MLT1D LTR MaLR 6 194 -361 646 290 54 49 chr6 82810599 82810823 -99604419 - MIR SINE MIR -20 242 18 513 184 16 8 chr6 82810843 82810968 -99604274 + CT-rich Low_complexity Low_complexity 4 129 0 1399 162 34 49 chr6 82810968 82811234 -99604008 - AluJo SINE Alu -39 273 12 609 113 9 28 chr6 82812106 82812212 -99603030 - AluJ SINE Alu -19 293 190 935 118 0 7 chr6 82812218 82812353 -99602889 - AluJ SINE Alu -178 134 1 879 161 116 62 chr6 82812563 82812787 -99602455 - MER46A DNA MER2_type 0 236 1 409 304 34 20 chr6 82812846 82812994 -99602248 + L2 LINE L2 3164 3313 0 1018 282 147 24 chr6 82813270 82813773 -99601469 + L2 LINE L2 2316 2880 -434 237 269 139 28 chr6 82813853 82813961 -99601281 + L2 LINE L2 3021 3140 -173 2243 91 3 3 chr6 82814332 82814628 -99600614 - AluSx SINE Alu -16 296 1 21 0 0 0 chr6 82814630 82814651 -99600591 + AT_rich Low_complexity Low_complexity 1 21 0 1782 114 28 21 chr6 82814782 82815072 -99600170 - AluSx SINE Alu -18 294 3 297 256 61 0 chr6 82815658 82815740 -99599502 - L2 LINE L2 0 3313 3227 354 299 94 75 chr6 82817225 82817693 -99597549 + L1M2 LINE L1 585 1142 -5707 279 180 0 0 chr6 82818136 82818197 -99597045 - L1ME4a LINE L1 -2 6119 6059 2479 56 3 10 chr6 82818688 82818992 -99596250 + AluSp SINE Alu 1 302 -11 22 35 0 0 chr6 82819017 82819046 -99596196 + AT_rich Low_complexity Low_complexity 1 29 0 1050 174 57 57 chr6 82819068 82819315 -99595927 + MLT1D LTR MaLR 252 498 -7 2334 67 10 0 chr6 82819335 82819635 -99595607 - AluSq SINE Alu -10 303 1 341 316 104 92 chr6 82819678 82819994 -99595248 + L2 LINE L2 2410 2737 -577 1758 153 7 41 chr6 82819994 82820288 -99594954 - AluJb SINE Alu -28 284 1 341 316 104 92 chr6 82820288 82820527 -99594715 + L2 LINE L2 2737 2972 -342 618 146 46 204 chr6 82821795 82822118 -99593124 + ORSL DNA AcHobo 4 275 0 714 249 83 0 chr6 82822194 82822363 -99592879 - MER5A DNA MER1_type 0 189 7 2394 74 0 10 chr6 82822465 82822764 -99592478 - AluY SINE Alu -15 296 1 399 277 44 44 chr6 82822764 82822901 -99592341 - MIR SINE MIR -115 147 11 2006 92 77 0 chr6 82823141 82823414 -99591828 - AluSx SINE Alu -18 294 1 27 0 0 0 chr6 82823650 82823677 -99591565 + AT_rich Low_complexity Low_complexity 1 27 0 333 202 11 43 chr6 82823935 82824029 -99591213 + L1MC4 LINE L1 6613 6703 -1339 190 190 17 17 chr6 82824034 82824092 -99591150 + (TATATG)n Simple_repeat Simple_repeat 4 61 0 2266 116 3 0 chr6 82824095 82824406 -99590836 - AluSx SINE Alu 0 312 1 1227 185 30 72 chr6 82824521 82824949 -99590293 + MER65A-int LTR ERV1 2026 2435 -4323 2227 113 3 3 chr6 82825049 82825358 -99589884 - AluSx SINE Alu -3 309 1 2147 117 7 0 chr6 82825454 82825754 -99589488 - AluSx SINE Alu -10 302 1 1791 169 48 10 chr6 82825754 82826049 -99589193 - AluJo SINE Alu -6 306 1 27 0 0 0 chr6 82826265 82826292 -99588950 + AT_rich Low_complexity Low_complexity 1 27 0 467 82 0 0 chr6 82826301 82826362 -99588880 - U6 snRNA snRNA -46 61 1 466 157 0 65 chr6 82826369 82826477 -99588765 + MER65A-int LTR ERV1 3630 3730 -2868 2093 195 80 92 chr6 82826558 82827348 -99587894 + MER65A-int LTR ERV1 2474 3272 -1664 2218 103 0 7 chr6 82827348 82827649 -99587593 - AluSc SINE Alu -10 299 1 2093 195 80 92 chr6 82827649 82827715 -99587527 + MER65A-int LTR ERV1 3272 3337 -1599 2157 128 0 13 chr6 82827715 82828019 -99587223 - AluJb SINE Alu -12 300 1 2093 195 80 92 chr6 82828019 82828596 -99586646 + MER65A-int LTR ERV1 3337 3774 -1162 1636 179 9 53 chr6 82828611 82828929 -99586313 - AluJo SINE Alu -8 304 1 273 276 0 40 chr6 82828981 82829057 -99586185 + MER65A-int LTR ERV1 3887 3959 -977 254 167 130 0 chr6 82829079 82829133 -99586109 + MER65A-int LTR ERV1 5337 5397 -934 1953 222 104 4 chr6 82829137 82829619 -99585623 + MER65A-int LTR ERV1 3603 4132 -739 2033 125 4 0 chr6 82829621 82829930 -99585312 + AluSx SINE Alu 1 310 0 2469 219 53 7 chr6 82829938 82830545 -99584697 + MER65A-int LTR ERV1 4237 4871 0 2283 137 17 78 chr6 82830545 82831019 -99584223 + MER65A LTR ERV1 1 445 0 804 127 0 16 chr6 82831065 82831191 -99584051 + FLAM_A SINE Alu 5 128 -5 1337 125 0 0 chr6 82831361 82831545 -99583697 - AluSg/x SINE Alu -2 310 127 342 195 46 35 chr6 82831549 82831636 -99583606 + AluSg/x SINE Alu 209 296 -4 317 217 12 0 chr6 82831636 82831719 -99583523 + GA-rich Low_complexity Low_complexity 1 84 0 973 180 0 0 chr6 82833000 82833150 -99582092 - FRAM SINE Alu -25 151 2 245 217 17 0 chr6 82833152 82833212 -99582030 - MER116 DNA Mariner -19 61 1 1679 127 8 0 chr6 82833274 82833511 -99581731 - AluSx SINE Alu -73 239 1 2639 128 11 60 chr6 82833535 82834002 -99581240 - MER83 LTR ERV1 -4 444 1 5029 192 3 10 chr6 82834183 82835273 -99579969 - L1PB2 LINE L1 -1363 4783 3702 * 5489 150 15 11 chr6 82835271 82835833 -99579409 + L1PB2 LINE L1 4793 5351 -800 2212 96 0 3 chr6 82835833 82836126 -99579116 + AluSx SINE Alu 1 292 -20 5489 150 15 11 chr6 82836126 82836914 -99578328 + L1PB2 LINE L1 5351 6150 -1 2283 111 0 6 chr6 82836915 82837230 -99578012 + AluSq SINE Alu 1 313 0 2062 115 45 0 chr6 82838112 82838400 -99576842 + AluSq SINE Alu 1 301 -12 3282 175 43 2 chr6 82838499 82839122 -99576120 + MER44D DNA MER2_type 1 649 -56 2221 158 105 0 chr6 82839122 82839570 -99575672 - LTR44 LTR ERV1 0 519 25 1826 149 0 42 chr6 82839578 82839886 -99575356 - AluSx SINE Alu -17 295 1 490 191 11 32 chr6 82839931 82840025 -99575217 + MER44D DNA MER2_type 642 605 0 704 161 46 31 chr6 82840790 82840920 -99574322 - FLAM_A SINE Alu -1 132 1 1903 120 7 0 chr6 82841081 82841356 -99573886 - AluSx SINE Alu -19 293 17 1814 150 3 46 chr6 82841405 82841731 -99573511 - AluSx SINE Alu 0 312 1 25 20 0 59 chr6 82842101 82842152 -99573090 + AT_rich Low_complexity Low_complexity 1 48 0 23850 143 12 38 chr6 82842863 82843713 -99571529 - L1PA10 LINE L1 -10 6473 5602 2094 141 0 10 chr6 82843713 82844017 -99571225 - AluSx SINE Alu -11 301 1 23850 143 12 38 chr6 82844017 82845611 -99569631 - L1PA10 LINE L1 -881 5602 3967 1838 124 14 28 chr6 82845611 82845954 -99569288 - AluSx SINE Alu 0 343 5 23850 143 12 38 chr6 82845954 82846093 -99569149 - L1PA10 LINE L1 -2516 3967 3826 2078 137 20 0 chr6 82846093 82846385 -99568857 + AluSx SINE Alu 1 298 -14 23850 143 12 38 chr6 82846385 82848162 -99567080 - L1PA10 LINE L1 -2657 3826 2003 2253 95 7 3 chr6 82848162 82848457 -99566785 + AluY SINE Alu 1 296 -15 23850 143 12 38 chr6 82848457 82848943 -99566299 - L1PA10 LINE L1 -4480 2003 1506 2025 116 7 4 chr6 82848943 82849219 -99566023 - AluSx SINE Alu -11 301 25 23850 143 12 38 chr6 82849219 82849938 -99565304 - L1PA10 LINE L1 -4977 1506 1047 2703 85 3 0 chr6 82849938 82850292 -99564950 + THE1A LTR MaLR 1 355 0 23850 143 12 38 chr6 82850292 82850562 -99564680 - L1PA10 LINE L1 -5436 1047 771 2236 161 3 3 chr6 82850562 82850954 -99564288 - L1PA10 LINE L1 -5367 508 117 28 0 0 0 chr6 82850956 82850984 -99564258 + AT_rich Low_complexity Low_complexity 1 28 0 466 189 135 9 chr6 82851171 82851282 -99563960 + AluJo SINE Alu 10 134 -178 342 299 27 0 chr6 82851300 82851447 -99563795 - L1MC4 LINE L1 -1431 6611 6461 280 188 0 42 chr6 82851668 82851764 -99563478 + GA-rich Low_complexity Low_complexity 4 95 0 4949 152 7 15 chr6 82852137 82852999 -99562243 + THE1-int LTR MaLR 716 1570 -10 * 8484 183 55 15 chr6 82852990 82853095 -99562147 - L1PA15-16 LINE L1 -2521 4328 4229 222 37 0 0 chr6 82853095 82853122 -99562120 + (TTG)n Simple_repeat Simple_repeat 1 27 0 8484 183 55 15 chr6 82853122 82855575 -99559667 - L1PA15-16 LINE L1 -2620 4229 1606 297 0 0 0 chr6 82855575 82855608 -99559634 + (CA)n Simple_repeat Simple_repeat 2 34 0 8484 183 55 15 chr6 82855608 82855764 -99559478 - L1PA15-16 LINE L1 -5243 1606 1458 3094 163 19 9 chr6 82855746 82856285 -99558957 - L1PA15-16 LINE L1 -6305 544 1 * 566 223 43 9 chr6 82856291 82856502 -99558740 - HAL1 LINE L1 -1208 1299 1082 2143 128 0 13 chr6 82856711 82857017 -99558225 + AluSq SINE Alu 1 302 -11 816 290 56 81 chr6 82857046 82857965 -99557277 - L1MEc LINE L1 -4876 1520 580 1019 87 0 7 chr6 82857965 82858114 -99557128 + (TTC)n Simple_repeat Simple_repeat 2 149 0 816 290 56 81 chr6 82858114 82858132 -99557110 - L1MEc LINE L1 -5816 580 563 669 55 0 0 chr6 82858132 82858223 -99557019 - L1PA8 LINE L1 0 6172 6082 816 290 56 81 chr6 82858223 82858741 -99556501 - L1MEc LINE L1 -5833 563 100 1084 202 0 16 chr6 82858836 82859024 -99556218 + AluJb SINE Alu 106 290 -22 246 161 0 36 chr6 82859055 82859111 -99556131 - Alu SINE Alu 0 302 249 1895 156 13 19 chr6 82859248 82859562 -99555680 - AluJb SINE Alu 0 312 1 787 299 195 32 chr6 82859563 82859610 -99555632 - HAL1 LINE L1 -1519 988 950 1941 151 7 0 chr6 82859610 82859901 -99555341 - AluSx SINE Alu -19 293 1 787 299 195 32 chr6 82859901 82860699 -99554543 - HAL1 LINE L1 -1557 950 5 216 97 0 0 chr6 82861029 82861060 -99554182 + (TA)n Simple_repeat Simple_repeat 1 31 0 2144 138 0 3 chr6 82861085 82861390 -99553852 - AluSx SINE Alu -8 304 1 466 221 139 0 chr6 82861404 82861526 -99553716 - MSTD LTR MaLR -257 139 1 1297 246 85 85 chr6 82862543 82863119 -99552123 - MLT1E LTR MaLR 0 593 18 785 221 17 9 chr6 82863176 82863350 -99551892 - MER45A DNA AcHobo -4 174 1 417 269 51 88 chr6 82863702 82863775 -99551467 - LTR33 LTR ERVL -2 519 445 1613 160 16 87 chr6 82863775 82863910 -99551332 + MER2 DNA MER2_type 2 145 -199 1900 128 49 0 chr6 82863910 82864196 -99551046 - AluSx SINE Alu 0 303 5 1613 160 16 87 chr6 82864196 82864427 -99550815 + MER2 DNA MER2_type 145 343 -1 417 269 51 88 chr6 82864427 82864647 -99550595 - LTR33 LTR ERVL -76 445 237 1666 175 19 121 chr6 82864692 82865156 -99550086 + MER47B DNA MER2_type 1 417 -1 29 78 0 0 chr6 82865422 82865486 -99549756 + AT_rich Low_complexity Low_complexity 1 64 0 402 232 0 0 chr6 82865672 82865771 -99549471 - L1MC4a LINE L1 -1898 5910 5812 1202 264 101 0 chr6 82865839 82866267 -99548975 - L1MC4a LINE L1 -1984 5824 5354 1657 194 0 19 chr6 82866275 82866590 -99548652 + AluJo SINE Alu 1 309 -3 2237 30 45 0 chr6 82866803 82867071 -99548171 - AluY SINE Alu -11 300 21 279 284 0 0 chr6 82867161 82867249 -99547993 - L1MC4a LINE L1 -2314 3832 3745 1631 226 29 51 chr6 82867406 82867897 -99547345 + MLT2B1 LTR ERVL 1 480 -40 300 153 36 18 chr6 82867954 82868065 -99547177 + (TA)n Simple_repeat Simple_repeat 1 113 0 323 89 0 0 chr6 82868065 82868120 -99547122 + MLT2C2 LTR ERVL 416 463 -1 206 178 0 22 chr6 82868299 82868344 -99546898 + T-rich Low_complexity Low_complexity 2 45 0 2473 86 0 0 chr6 82868711 82869013 -99546229 - AluSx SINE Alu -10 302 1 240 143 0 0 chr6 82870029 82870073 -99545169 + (TA)n Simple_repeat Simple_repeat 1 45 0 2369 98 0 0 chr6 82870073 82870369 -99544873 - AluSx SINE Alu -16 296 1 29 0 0 0 chr6 82870772 82870801 -99544441 + AT_rich Low_complexity Low_complexity 1 29 0 2214 120 0 16 chr6 82871394 82871710 -99543532 - AluSx SINE Alu -1 311 1 1949 163 108 38 chr6 82872042 82872442 -99542800 + MSTC LTR MaLR 1 428 0 237 231 0 0 chr6 82873046 82873098 -99542144 - L2 LINE L2 0 3272 3221 2310 99 7 3 chr6 82873391 82873693 -99541549 + AluSq SINE Alu 3 305 -8 2024 138 24 0 chr6 82873760 82874049 -99541193 + AluJb SINE Alu 1 296 -16 21 36 0 0 chr6 82874191 82874219 -99541023 + AT_rich Low_complexity Low_complexity 1 28 0 2171 107 0 0 chr6 82874219 82874508 -99540734 + AluSc SINE Alu 1 289 -20 745 194 0 0 chr6 82874563 82874692 -99540550 - FLAM_C SINE Alu -9 134 6 374 256 31 62 chr6 82875093 82875207 -99540035 + LTR37A LTR ERV1 160 269 -157 2125 115 16 0 chr6 82875207 82875511 -99539731 - AluSq SINE Alu -4 309 1 374 256 31 62 chr6 82875511 82875556 -99539686 + LTR37A LTR ERV1 269 314 -112 485 135 77 0 chr6 82875599 82875703 -99539539 + LTR37A LTR ERV1 308 419 -7 324 0 0 0 chr6 82876155 82876191 -99539051 + (TG)n Simple_repeat Simple_repeat 1 36 0 1968 139 4 0 chr6 82876191 82876471 -99538771 - AluSx SINE Alu -31 281 1 1022 113 46 0 chr6 82876764 82876915 -99538327 - BC200 scRNA scRNA -42 158 1 21 36 0 0 chr6 82877093 82877121 -99538121 + AT_rich Low_complexity Low_complexity 1 28 0 1303 139 35 20 chr6 82877690 82877891 -99537351 + AluJo SINE Alu 86 289 -23 1489 201 57 15 chr6 82878002 82878404 -99536838 - Charlie1b DNA MER1_type 0 523 105 2302 118 0 0 chr6 82878665 82878971 -99536271 - AluSx SINE Alu -6 306 1 1293 188 82 143 chr6 82879034 82879719 -99535523 - LTR8A LTR ERV1 -88 633 1 3485 103 12 16 chr6 82879743 82880259 -99534983 + MER75 DNA T2_type 1 514 0 689 306 40 40 chr6 82881003 82881401 -99533841 - LTR16C LTR ERVL -4 487 90 831 328 45 6 chr6 82881524 82881878 -99533364 + MLT1K LTR MaLR 107 474 -114 245 261 104 9 chr6 82882198 82882313 -99532929 - L1MEd LINE L1 -5963 156 31 922 241 51 0 chr6 82882551 82882845 -99532397 - L1ME LINE L1 -3935 2326 2018 198 0 0 0 chr6 82882848 82882870 -99532372 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 21 36 0 0 chr6 82882893 82882921 -99532321 + AT_rich Low_complexity Low_complexity 1 28 0 2410 54 0 3 chr6 82882963 82883257 -99531985 - AluY SINE Alu 0 311 19 4498 148 9 15 chr6 82883309 82883537 -99531705 + MER44D DNA MER2_type 1 229 -2258 2201 113 73 14 chr6 82883537 82883881 -99531361 + THE1B LTR MaLR 1 364 0 4498 148 9 15 chr6 82883881 82884389 -99530853 + MER44D DNA MER2_type 229 605 0 2452 248 64 59 chr6 82884396 82884941 -99530301 - L1ME LINE L1 -4471 1790 1249 2169 120 0 3 chr6 82884941 82885241 -99530001 - AluSx SINE Alu -13 299 1 2452 248 64 59 chr6 82885241 82885721 -99529521 - L1ME LINE L1 -5012 1249 773 1632 214 7 10 chr6 82885721 82886020 -99529222 - AluJb SINE Alu -10 302 5 2452 248 64 59 chr6 82886020 82886717 -99528525 - L1ME LINE L1 -5488 773 20 226 293 86 92 chr6 82886922 82887096 -99528146 - MIR SINE MIR -61 201 29 281 242 55 67 chr6 82887104 82887269 -99527973 + MIR SINE MIR 81 243 -19 432 235 56 125 chr6 82887275 82887609 -99527633 - MLT1I LTR MaLR -39 370 96 515 345 67 8 chr6 82889063 82889301 -99525941 - MIR SINE MIR -10 252 1 33 66 0 0 chr6 82889489 82889550 -99525692 + AT_rich Low_complexity Low_complexity 1 61 0 2416 215 79 12 chr6 82889923 82890490 -99524752 - MER77 LTR ERV1 0 605 1 268 279 85 39 chr6 82890520 82890649 -99524593 - MIR3 SINE MIR -7 201 67 576 303 5 27 chr6 82890756 82890944 -99524298 - MER5A DNA MER1_type -5 184 1 842 239 81 0 chr6 82893180 82893389 -99521853 - MER8 DNA MER2_type 0 239 14 341 256 30 49 chr6 82893392 82893556 -99521686 - L1MC5 LINE L1 -100 7861 7701 2449 95 0 0 chr6 82893742 82894047 -99521195 + AluSx SINE Alu 3 307 -5 302 287 115 33 chr6 82895562 82895684 -99519558 + MIR SINE MIR 20 151 -111 929 176 14 0 chr6 82895707 82895887 -99519355 - AluJ SINE Alu 0 316 135 180 0 0 0 chr6 82895887 82895907 -99519335 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 503 135 0 0 chr6 82895907 82895981 -99519261 - AluSg/x SINE Alu -30 279 206 * 507 97 28 0 chr6 82895975 82896047 -99519195 - AluJo SINE Alu -161 151 78 22 0 0 0 chr6 82896071 82896093 -99519149 + AT_rich Low_complexity Low_complexity 1 22 0 789 319 90 21 chr6 82896195 82896584 -99518658 + LTR16C LTR ERVL 76 491 0 438 219 0 0 chr6 82896632 82896714 -99518528 + AluJ/FLAM SINE Alu 3 84 -228 254 100 160 0 chr6 82896714 82896764 -99518478 + AluJ/FLAM SINE Alu 45 102 -200 2606 153 51 66 chr6 82897910 82898438 -99516804 + MLT2B1 LTR ERVL 1 520 0 8410 179 41 36 chr6 82898439 82900221 -99515021 + ERVL-B1 LTR ERVL 2 1792 -3972 2606 172 35 47 chr6 82900221 82900813 -99514429 + MER34C LTR ERV1 1 585 0 21920 146 51 12 chr6 82900813 82904634 -99510608 + ERVL-B1 LTR ERVL 1789 5757 -7 2435 157 38 70 chr6 82904634 82905164 -99510078 + MLT2B1 LTR ERVL 1 513 -7 184 297 36 80 chr6 82906409 82906547 -99508695 + MIR SINE MIR 98 229 -33 235 291 64 9 chr6 82907596 82907706 -99507536 - MER94 DNA DNA -8 126 11 635 303 38 5 chr6 82908380 82908565 -99506677 + MIR SINE MIR 2 192 -70 879 329 43 15 chr6 82908857 82909185 -99506057 + L2 LINE L2 2474 2810 -504 562 268 108 26 chr6 82909195 82909426 -99505816 - MER102a DNA MER1_type -10 320 71 278 372 62 49 chr6 82909504 82909730 -99505512 + L2 LINE L2 2850 3078 -194 1026 279 99 40 chr6 82909933 82910509 -99504733 - L1MEd LINE L1 -5507 612 3 321 294 96 34 chr6 82910519 82910665 -99504577 + L2 LINE L2 3155 3309 -4 209 314 49 29 chr6 82910704 82910806 -99504436 + L2 LINE L2 3199 3302 -11 22 0 0 0 chr6 82910807 82910829 -99504413 + AT_rich Low_complexity Low_complexity 1 22 0 6939 134 10 31 chr6 82910908 82912766 -99502476 - L1PA11 LINE L1 0 6174 4325 2111 122 3 13 chr6 82912766 82913069 -99502173 - AluSx SINE Alu -12 300 1 6939 134 10 31 chr6 82913069 82913226 -99502016 - L1PA11 LINE L1 -1849 4325 4166 302 27 0 0 chr6 82913226 82913263 -99501979 + L1PA12 LINE L1 1458 1494 -6087 1905 137 41 3 chr6 82913263 82913805 -99501437 + MER51A LTR ERV1 1 634 0 1125 180 43 5 chr6 82913994 82914205 -99501037 - MER20 DNA MER1_type 0 219 1 944 64 0 141 chr6 82914798 82914954 -99500288 + AluSq/x SINE Alu 1 134 -178 1685 129 98 0 chr6 82914955 82915210 -99500032 + AluSx SINE Alu 1 280 -32 239 330 176 0 chr6 82915497 82915612 -99499630 - MIR SINE MIR -63 145 17 21 71 0 0 chr6 82916195 82916237 -99499005 + AT_rich Low_complexity Low_complexity 1 42 0 307 293 12 12 chr6 82916286 82916450 -99498792 + (TA)n Simple_repeat Simple_repeat 1 164 0 745 148 111 0 chr6 82916567 82916702 -99498540 - FRAM SINE Alu -12 154 5 23 68 0 0 chr6 82917408 82917452 -99497790 + AT_rich Low_complexity Low_complexity 1 44 0 2318 105 3 0 chr6 82917544 82917848 -99497394 - AluSx SINE Alu -7 305 1 232 182 0 23 chr6 82917939 82917983 -99497259 - MIR SINE MIR 0 262 220 459 140 65 196 chr6 82918010 82918149 -99497093 - L1MC5 LINE L1 -50 7911 7808 1464 135 131 8 chr6 82918149 82918409 -99496833 - AluSx SINE Alu -10 302 11 459 140 65 196 chr6 82918409 82918483 -99496759 - L1MC5 LINE L1 -153 7808 7726 21 0 0 0 chr6 82918627 82918648 -99496594 + AT_rich Low_complexity Low_complexity 1 21 0 1073 29 29 0 chr6 82918648 82918788 -99496454 - L1PA4 LINE L1 -145 6010 5867 419 266 154 47 chr6 82918786 82919210 -99496032 + L1ME LINE L1 5301 5769 -352 * 351 215 13 0 chr6 82919375 82919454 -99495788 - MER116 DNA Mariner 0 80 1 614 191 0 0 chr6 82919593 82919703 -99495539 - HY1 scRNA scRNA -2 110 1 2220 88 3 0 chr6 82919741 82920024 -99495218 + AluSx SINE Alu 25 308 -4 257 163 102 0 chr6 82920395 82920444 -99494798 - L2 LINE L2 -12 3260 3207 255 152 0 0 chr6 82920454 82920500 -99494742 + GA-rich Low_complexity Low_complexity 3 48 0 394 322 58 35 chr6 82920842 82921016 -99494226 + MIR SINE MIR 15 192 -70 2331 95 43 9 chr6 82922287 82922613 -99492629 - L1PA7 LINE L1 -4 6150 5814 31426 113 17 57 chr6 82922630 82925928 -99489314 - L1PA7 LINE L1 -2 6152 3243 2291 115 0 0 chr6 82925928 82926233 -99489009 - AluSg SINE Alu -5 305 1 31426 113 17 57 chr6 82926233 82929340 -99485902 - L1PA7 LINE L1 -2911 3243 12 486 170 21 0 chr6 82929478 82929572 -99485670 - MER53 DNA DNA -93 96 1 213 222 19 0 chr6 82929872 82929926 -99485316 + (TG)n Simple_repeat Simple_repeat 1 55 0 906 229 165 53 chr6 82930413 82930806 -99484436 - L2 LINE L2 0 3313 2877 629 233 208 4 chr6 82930811 82931047 -99484195 + HAL1 LINE L1 1582 1865 -642 1495 187 20 27 chr6 82931142 82931436 -99483806 - AluJb SINE Alu -19 293 2 316 111 0 0 chr6 82931445 82931490 -99483752 - L1MA9 LINE L1 -1 6311 6267 681 229 263 66 chr6 82931510 82931774 -99483468 + HAL1 LINE L1 1691 1902 -605 2066 140 0 0 chr6 82931774 82932074 -99483168 + AluSx SINE Alu 1 300 -12 681 229 263 66 chr6 82932074 82932460 -99482782 + HAL1 LINE L1 1902 2469 -38 514 45 0 0 chr6 82932463 82932529 -99482713 - L1MD1 LINE L1 -5 6237 6172 1634 234 113 25 chr6 82932529 82933050 -99482192 + L1M4 LINE L1 3 569 -5973 274 210 32 0 chr6 82933237 82933299 -99481943 + MER92C LTR ERV1 491 554 0 208 156 0 0 chr6 82933379 82933411 -99481831 - L2 LINE L2 -14 3299 3268 1610 192 0 30 chr6 82933594 82933896 -99481346 - AluJb SINE Alu -19 293 1 269 278 28 0 chr6 82934024 82934096 -99481146 - L2 LINE L2 0 3313 3240 838 181 133 53 chr6 82934099 82934325 -99480917 - MIR SINE MIR -12 250 7 242 320 80 0 chr6 82934315 82934390 -99480852 - L2 LINE L2 -47 3225 3145 * 1070 84 11 22 chr6 82934862 82935041 -99480201 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 272 120 20 0 chr6 82935041 82935091 -99480151 + CT-rich Low_complexity Low_complexity 3 53 0 1996 89 27 136 chr6 82935094 82935432 -99479810 - AluSq SINE Alu -2 301 1 1222 194 49 138 chr6 82936052 82936340 -99478902 + LTR37A LTR ERV1 19 254 -172 1619 228 27 3 chr6 82936340 82936673 -99478569 - MER58B DNA MER1_type 0 341 1 1222 194 49 138 chr6 82936673 82936832 -99478410 + LTR37A LTR ERV1 254 426 0 2020 125 17 7 chr6 82936899 82937196 -99478046 + AluSx SINE Alu 1 300 -12 289 296 171 33 chr6 82937210 82937246 -99477996 + MER5B DNA MER1_type 2 32 -146 2198 110 7 3 chr6 82937246 82937545 -99477697 + AluY SINE Alu 1 300 -11 289 296 171 33 chr6 82937545 82937660 -99477582 + MER5B DNA MER1_type 32 174 -4 2398 95 3 0 chr6 82937923 82938228 -99477014 + AluSp SINE Alu 2 307 -6 803 175 0 29 chr6 82938548 82938685 -99476557 - FRAM SINE Alu -23 153 21 27 49 0 0 chr6 82938724 82938765 -99476477 + AT_rich Low_complexity Low_complexity 1 41 0 214 289 100 18 chr6 82939080 82939193 -99476049 - MIR SINE MIR -68 140 39 304 294 37 0 chr6 82939282 82939391 -99475851 - L2 LINE L2 -4 3309 3197 252 271 100 0 chr6 82939456 82939526 -99475716 - MIR SINE MIR -82 180 104 1587 178 0 18 chr6 82939548 82939829 -99475413 - AluJb SINE Alu -32 280 5 2003 137 69 41 chr6 82940984 82941501 -99473741 + MLT2A2 LTR ERVL 1 545 -9 602 225 31 0 chr6 82941503 82941632 -99473610 + MER5A DNA MER1_type 57 189 0 1729 120 62 0 chr6 82942911 82943152 -99472090 + AluSg SINE Alu 35 290 -20 180 0 0 0 chr6 82943158 82943178 -99472064 + (TCTA)n Simple_repeat Simple_repeat 3 22 0 342 289 0 0 chr6 82943178 82943268 -99471974 + L1MC4 LINE L1 6615 6704 -1338 228 233 33 0 chr6 82943521 82943581 -99471661 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 1213 36 0 0 chr6 82943873 82944011 -99471231 + L1PA4 LINE L1 6015 6152 -3 26 30 0 0 chr6 82944031 82944064 -99471178 + AT_rich Low_complexity Low_complexity 1 33 0 949 163 27 45 chr6 82944064 82944285 -99470957 - L1M4 LINE L1 -1107 5039 4823 394 268 72 80 chr6 82944492 82944869 -99470373 + L1ME4a LINE L1 5746 6119 -2 624 169 206 44 chr6 82944996 82945156 -99470086 + MER5A DNA MER1_type 1 186 -3 804 191 40 6 chr6 82945676 82945849 -99469393 - MER5A DNA MER1_type -10 179 1 2360 98 0 0 chr6 82946997 82947302 -99467940 - AluSq SINE Alu -8 305 1 220 326 43 43 chr6 82948095 82948233 -99467009 - MIR SINE MIR -11 251 114 592 192 241 5 chr6 82949977 82950180 -99465062 - ORSL DNA AcHobo -24 251 1 337 324 9 0 chr6 82950445 82950550 -99464692 + MIR3 SINE MIR 85 190 -18 221 276 0 0 chr6 82950760 82950818 -99464424 + L2 LINE L2 3251 3308 -5 209 243 0 43 chr6 82951829 82951899 -99463343 + MIR SINE MIR 94 160 -102 2007 129 4 0 chr6 82952830 82953150 -99462092 + AluSx SINE Alu 1 321 0 322 77 135 0 chr6 82953161 82953213 -99462029 + MER67D LTR ERV1 1 59 -455 * 339 211 0 0 chr6 82953202 82953259 -99461983 - AluJb SINE Alu -7 295 239 1193 112 6 22 chr6 82953260 82953438 -99461804 - AluJb SINE Alu -137 175 1 1142 174 38 118 chr6 82953438 82953485 -99461757 + MER67C LTR ERV1 32 81 -491 186 43 0 0 chr6 82953485 82953508 -99461734 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 3665 22 0 2 chr6 82953511 82953913 -99461329 - L1PA4 LINE L1 -13 6142 5742 1142 174 38 118 chr6 82953913 82954157 -99461085 + MER67C LTR ERV1 83 331 -241 325 288 135 42 chr6 82954368 82954583 -99460659 + L2 LINE L2 2044 2278 -1036 21 67 0 40 chr6 82954660 82954735 -99460507 + AT_rich Low_complexity Low_complexity 1 72 0 21 36 0 0 chr6 82954884 82954912 -99460330 + AT_rich Low_complexity Low_complexity 1 28 0 255 365 47 6 chr6 82955334 82955504 -99459738 + L2 LINE L2 3137 3313 0 335 221 13 0 chr6 82955610 82955687 -99459555 + LTR37B LTR ERV1 2 79 -389 453 214 12 0 chr6 82955711 82955795 -99459447 + MER58 DNA MER1_type 17 101 -240 505 125 102 0 chr6 82955805 82955893 -99459349 + MER58 DNA MER1_type 2318 2414 -6 543 235 145 42 chr6 82955907 82956218 -99459024 + LTR37B LTR ERV1 126 468 0 2189 148 82 22 chr6 82957532 82957935 -99457307 + MSTB1 LTR MaLR 10 432 0 2201 113 10 3 chr6 82959640 82959950 -99455292 - AluSx SINE Alu 0 312 1 446 303 0 28 chr6 82962344 82962489 -99452753 + MIR3 SINE MIR 9 149 -59 474 228 101 104 chr6 82962988 82963417 -99451825 + MLT1J LTR MaLR 5 444 -2 4599 72 18 0 chr6 82963431 82963975 -99451267 + MER41A LTR ERV1 1 554 0 21 71 0 0 chr6 82964125 82964167 -99451075 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 82964787 82964808 -99450434 + AT_rich Low_complexity Low_complexity 1 21 0 3033 158 68 51 chr6 82965799 82966470 -99448772 - L1MD1 LINE L1 -300 5942 5258 2456 63 7 7 chr6 82966470 82966773 -99448469 - AluY SINE Alu -8 303 1 3033 158 68 51 chr6 82966773 82966866 -99448376 - L1MD1 LINE L1 -984 5258 5168 1057 213 69 9 chr6 82966892 82967108 -99448134 - L1MDa LINE L1 -6311 229 1 29 28 0 0 chr6 82967117 82967153 -99448089 + AT_rich Low_complexity Low_complexity 1 36 0 1514 238 128 6 chr6 82967164 82967517 -99447725 + MSTD LTR MaLR 1 396 0 2133 106 14 7 chr6 82967762 82968054 -99447188 + AluSx SINE Alu 1 294 -18 1443 194 67 55 chr6 82968123 82968484 -99446758 + MLT1A1 LTR MaLR 1 365 0 210 128 0 0 chr6 82968520 82968559 -99446683 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1851 283 60 35 chr6 82968567 82969483 -99445759 + HAL1b LINE L1 362 1300 -48 883 169 12 19 chr6 82969619 82969779 -99445463 + MSTD LTR MaLR 201 359 -37 2878 142 69 24 chr6 82969779 82970315 -99444927 + L1MA8 LINE L1 5727 6286 -5 1726 148 52 0 chr6 82970326 82970630 -99444612 + AluSx SINE Alu 1 318 0 5458 36 0 0 chr6 82971739 82972347 -99442895 + L1PA4 LINE L1 5548 6155 0 684 157 16 29 chr6 82972542 82973244 -99441998 + L1MA8 LINE L1 5373 6244 -47 2551 162 19 5 chr6 82973244 82973664 -99441578 + MSTB LTR MaLR 1 426 0 684 157 16 29 chr6 82973664 82973705 -99441537 + L1MA8 LINE L1 6244 6284 -7 501 183 42 42 chr6 82974714 82974856 -99440386 + MER96B DNA MER1_type? 275 416 -1 1984 69 0 46 chr6 82975906 82976211 -99439031 - L1PA5 LINE L1 0 6154 5864 4799 48 0 19 chr6 82976312 82976376 -99438866 - L1PA5 LINE L1 -272 5882 5818 2316 84 0 10 chr6 82976376 82976675 -99438567 - AluY SINE Alu -15 296 1 4799 48 0 19 chr6 82976675 82977251 -99437991 - L1PA5 LINE L1 -336 5818 5254 1127 152 18 0 chr6 82977817 82977988 -99437254 - AluJo SINE Alu -12 300 127 2071 123 0 0 chr6 82978289 82978594 -99436648 + AluSx SINE Alu 1 305 0 641 176 28 0 chr6 82978600 82978742 -99436500 + L1MA9 LINE L1 6131 6276 -36 719 188 0 0 chr6 82979200 82979317 -99435925 + FLAM_C SINE Alu 1 117 -26 330 26 0 0 chr6 82979317 82979356 -99435886 + (CA)n Simple_repeat Simple_repeat 2 40 0 2095 132 3 0 chr6 82979843 82980138 -99435104 + AluY SINE Alu 5 300 -11 1778 124 40 76 chr6 82980650 82981030 -99434212 + MLT2D LTR ERVL 1 366 -48 740 177 33 172 chr6 82982016 82982231 -99433011 - MLT1A2 LTR MaLR -17 357 173 267 103 0 0 chr6 82982231 82982270 -99432972 + (GA)n Simple_repeat Simple_repeat 2 40 0 350 83 0 188 chr6 82982293 82982389 -99432853 - MLT1A2 LTR MaLR -241 124 47 2263 90 72 26 chr6 82983178 82983524 -99431718 - THE1B LTR MaLR 0 364 3 572 344 188 12 chr6 82983842 82984305 -99430937 + L2 LINE L2 2503 3038 -275 744 163 70 6 chr6 82984306 82984478 -99430764 - MER63 DNA MER1_type -878 183 1 560 233 110 0 chr6 82984480 82984643 -99430599 + LTR16C LTR ERVL 311 491 0 299 217 229 0 chr6 82984643 82984726 -99430516 + L2 LINE L2 3171 3272 0 209 363 57 24 chr6 82986440 82986564 -99428678 - L2 LINE L2 -13 3259 3132 345 379 50 16 chr6 82986676 82986858 -99428384 - L2 LINE L2 -218 3054 2867 212 273 121 30 chr6 82986996 82987095 -99428147 - L2 LINE L2 -4 3309 3202 2249 108 0 0 chr6 82987598 82987885 -99427357 - AluSx SINE Alu -25 287 1 668 206 0 0 chr6 82988996 82989127 -99426115 - L1MB5 LINE L1 -8 6166 6036 249 311 113 51 chr6 82989287 82989657 -99425585 - L2 LINE L2 -1232 2082 1690 543 335 19 7 chr6 82989690 82989845 -99425397 + MIR3 SINE MIR 42 198 -10 781 228 92 35 chr6 82990106 82990571 -99424671 + MLT1G1 LTR MaLR 1 588 -7 21 82 0 0 chr6 82992105 82992154 -99423088 + AT_rich Low_complexity Low_complexity 1 49 0 349 271 34 8 chr6 82993371 82993489 -99421753 + LTR33 LTR ERVL 1 121 -400 477 219 104 30 chr6 82993516 82993680 -99421562 + LTR33 LTR ERVL 343 518 -3 1550 190 30 3 chr6 82994553 82994853 -99420389 - AluJo SINE Alu 0 312 5 378 120 40 20 chr6 82995039 82995139 -99420103 + (TA)n Simple_repeat Simple_repeat 1 102 0 242 289 0 0 chr6 82995196 82995286 -99419956 - L1MC4 LINE L1 -1339 6703 6614 * 274 256 23 0 chr6 82995210 82995296 -99419946 + L1MC4 LINE L1 6614 6701 -1341 28 29 0 0 chr6 82995346 82995381 -99419861 + AT_rich Low_complexity Low_complexity 1 35 0 1216 256 57 27 chr6 82995991 82996468 -99418774 - L1ME1 LINE L1 -1 6165 5675 30 27 0 0 chr6 82997831 82997868 -99417374 + AT_rich Low_complexity Low_complexity 1 37 0 208 0 62 0 chr6 82998844 82998876 -99416366 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2833 12 0 0 chr6 82998876 82999196 -99416046 - L1PA2 LINE L1 -9 6146 5827 383 330 28 0 chr6 83001325 83001434 -99413808 + MIR SINE MIR 50 161 -101 2340 110 3 0 chr6 83002801 83003111 -99412131 + AluSq SINE Alu 1 311 -2 777 234 53 10 chr6 83003190 83003399 -99411843 + MIR SINE MIR 4 221 -41 261 319 170 15 chr6 83003426 83003561 -99411681 - MIR3 SINE MIR -21 187 32 244 310 139 92 chr6 83004053 83004456 -99410786 - L2 LINE L2 -7 3265 2844 555 171 0 8 chr6 83004828 83004945 -99410297 - L1MA10 LINE L1 0 6334 6219 2088 109 36 10 chr6 83005020 83005324 -99409918 - AluSq SINE Alu 0 313 2 1592 143 162 12 chr6 83005362 83005683 -99409559 - Tigger7 DNA MER2_type 0 2587 2219 454 172 81 0 chr6 83005685 83005784 -99409458 - Tigger7 DNA MER2_type -626 107 1 218 239 15 45 chr6 83006957 83007024 -99408218 - L2 LINE L2 -1 3271 3207 1957 166 7 0 chr6 83007327 83007635 -99407607 - AluJb SINE Alu -2 310 1 5046 112 18 14 chr6 83007990 83008766 -99406476 + MER4E LTR ERV1 1 779 0 233 109 22 0 chr6 83009061 83009107 -99406135 + (TA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr6 83010111 83010135 -99405107 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr6 83011026 83011059 -99404183 + AT_rich Low_complexity Low_complexity 1 33 0 493 269 171 27 chr6 83011789 83012350 -99402892 + L1ME4a LINE L1 5475 6116 -5 1720 123 48 87 chr6 83013223 83013580 -99401662 + MER61A LTR ERV1 1 343 0 2274 152 58 39 chr6 83013581 83014120 -99401122 + MER61A-int LTR ERV1 1 549 -4668 22721 83 20 12 chr6 83014260 83015830 -99399412 + MER61A-int LTR ERV1 1411 2967 -2250 2221 81 39 3 chr6 83015830 83016115 -99399127 + AluY SINE Alu 1 295 -16 22721 83 20 12 chr6 83016115 83017921 -99397321 + MER61A-int LTR ERV1 2967 4814 -403 1272 119 35 0 chr6 83017921 83018123 -99397119 + MER61A-int LTR ERV1 5009 5217 0 1607 145 104 25 chr6 83018123 83018441 -99396801 + MER61A LTR ERV1 1 343 0 513 251 81 40 chr6 83020222 83020469 -99394773 - LTR33 LTR ERVL -4 517 261 375 232 79 55 chr6 83020540 83020704 -99394538 - LTR33 LTR ERVL -343 178 11 254 159 0 0 chr6 83022189 83022233 -99393009 - L2 LINE L2 -1 3312 3269 246 312 42 37 chr6 83022228 83022269 -99392973 - L2 LINE L2 -182 3131 3092 * 300 53 0 0 chr6 83022269 83022307 -99392935 + (TG)n Simple_repeat Simple_repeat 1 38 0 246 312 42 37 chr6 83022307 83022495 -99392747 - L2 LINE L2 -221 3092 2832 2501 71 13 0 chr6 83022495 83022804 -99392438 + AluSp SINE Alu 1 313 0 246 312 42 37 chr6 83022804 83022845 -99392397 - L2 LINE L2 -481 2832 2793 547 264 174 17 chr6 83022845 83023080 -99392162 + Charlie2 DNA MER1_type 1 272 -2590 1123 185 45 32 chr6 83023119 83023433 -99391809 + Charlie2 DNA MER1_type 1856 2173 -689 279 248 9 57 chr6 83023449 83023554 -99391688 + Charlie2 DNA MER1_type 2132 2231 -631 340 259 116 0 chr6 83023572 83023670 -99391572 + MER69A DNA AcHobo 1 109 -68 1584 225 52 21 chr6 83023736 83024269 -99390973 + Charlie2 DNA MER1_type 2306 2855 -7 379 243 77 61 chr6 83024272 83024453 -99390789 - L2 LINE L2 -512 2802 2619 375 270 80 7 chr6 83024632 83024769 -99390473 - U1 snRNA snRNA -18 147 1 463 273 63 21 chr6 83026255 83026398 -99388844 + MIR3 SINE MIR 20 168 -40 596 213 167 13 chr6 83026402 83026552 -99388690 - MER5A DNA MER1_type -1 188 16 2306 97 3 0 chr6 83026631 83026929 -99388313 - AluSx SINE Alu -13 299 1 183 222 0 22 chr6 83028396 83028441 -99386801 - L3 LINE CR1 -1356 221 178 254 271 118 49 chr6 83030144 83030288 -99384954 - MIR SINE MIR -1 261 108 180 179 0 0 chr6 83030368 83030407 -99384835 + GA-rich Low_complexity Low_complexity 1 39 0 422 270 36 0 chr6 83030832 83030943 -99384299 + MER5B DNA MER1_type 63 177 -1 353 194 282 0 chr6 83032344 83032447 -99382795 - MER94 DNA DNA 0 134 3 267 345 68 0 chr6 83032528 83032676 -99382566 - L3 LINE CR1 -166 1411 1254 258 318 0 0 chr6 83033383 83033449 -99381793 - L3 LINE CR1 -204 1373 1308 30 69 0 0 chr6 83033554 83033612 -99381630 + AT_rich Low_complexity Low_complexity 1 58 0 633 244 61 17 chr6 83033885 83034065 -99381177 + MIR SINE MIR 60 247 -15 21 0 0 0 chr6 83034222 83034243 -99380999 + AT_rich Low_complexity Low_complexity 1 21 0 243 257 209 19 chr6 83034678 83034783 -99380459 - L2 LINE L2 0 3313 3189 210 350 0 0 chr6 83034908 83034968 -99380274 + L2 LINE L2 3213 3272 0 2055 263 107 21 chr6 83035375 83036037 -99379205 + L2 LINE L2 1067 1785 -1529 3804 105 26 14 chr6 83036052 83036631 -99378611 + L1PA13 LINE L1 5578 6163 0 207 114 0 0 chr6 83036737 83036772 -99378470 + (TC)n Simple_repeat Simple_repeat 2 36 0 2150 102 7 10 chr6 83037432 83037725 -99377517 + AluSx SINE Alu 1 292 -20 214 220 70 156 chr6 83041342 83041528 -99373714 + MIR SINE MIR 65 234 -28 465 100 160 30 chr6 83041591 83041691 -99373551 + MER53 DNA DNA 1 113 -76 472 254 61 5 chr6 83041692 83041889 -99373353 + L1M4 LINE L1 2147 2354 -3792 677 253 86 0 chr6 83041897 83042083 -99373159 + MER63A DNA MER1_type 9 210 0 1457 280 122 36 chr6 83042083 83043588 -99371654 + L1M4 LINE L1 2347 3979 -2167 2330 169 44 0 chr6 83043709 83044141 -99371101 - L1M2 LINE L1 -556 5756 5306 3215 92 16 5 chr6 83044144 83044592 -99370650 + L1PA11 LINE L1 5719 6171 -3 308 225 194 23 chr6 83045055 83045184 -99370058 - L1ME4a LINE L1 -172 5949 5799 296 0 51 0 chr6 83045244 83045283 -99369959 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 528 246 28 0 chr6 83045290 83045432 -99369810 - L1M2 LINE L1 -811 5335 5190 338 256 30 113 chr6 83045746 83045914 -99369328 - MIR SINE MIR -107 155 2 204 364 15 0 chr6 83049297 83049363 -99365879 + L2 LINE L2 3186 3252 -20 464 324 60 19 chr6 83049402 83049769 -99365473 + L1ME4a LINE L1 5563 5944 -177 2036 140 0 0 chr6 83050206 83050549 -99364693 + AluSx SINE Alu 11 312 0 368 417 62 18 chr6 83050571 83050847 -99364395 + L1PB4 LINE L1 87 374 -6475 314 338 43 30 chr6 83050885 83051150 -99364092 + L1M2b LINE L1 388 1954 -5255 304 311 20 40 chr6 83051212 83051363 -99363879 + L1PB4 LINE L1 698 845 -6004 237 341 0 0 chr6 83051444 83051529 -99363713 + L1PB4 LINE L1 882 966 -5883 213 39 0 0 chr6 83051635 83051661 -99363581 + (T)n Simple_repeat Simple_repeat 1 26 0 12677 218 49 26 chr6 83051684 83055785 -99359457 + L1PB4 LINE L1 999 5004 -1854 2076 145 0 7 chr6 83055785 83056089 -99359153 - AluSx SINE Alu -8 304 3 12677 218 49 26 chr6 83056089 83056837 -99358405 + L1PB4 LINE L1 5004 5733 -1125 3574 132 2 14 chr6 83056837 83057420 -99357822 + L1PA16 LINE L1 5582 6157 -9 12677 218 49 26 chr6 83057420 83058242 -99357000 + L1PB4 LINE L1 5733 6846 -12 254 173 73 9 chr6 83058362 83058472 -99356770 + (TA)n Simple_repeat Simple_repeat 1 117 0 42 71 0 0 chr6 83058643 83058727 -99356515 + AT_rich Low_complexity Low_complexity 1 84 0 204 217 0 0 chr6 83059550 83059596 -99355646 - L2 LINE L2 0 3313 3268 447 330 93 32 chr6 83060395 83060771 -99354471 - HAL1 LINE L1 -23 2720 2322 257 191 0 179 chr6 83060905 83060960 -99354282 - MIR SINE MIR -186 76 39 1847 146 3 35 chr6 83060960 83061276 -99353966 - AluJb SINE Alu -6 306 1 257 191 0 179 chr6 83061276 83061304 -99353938 - MIR SINE MIR -223 39 8 1349 276 95 0 chr6 83061341 83061785 -99353457 - L1M4c LINE L1 -481 2262 1571 300 243 84 9 chr6 83061793 83061900 -99353342 - HAL1 LINE L1 -2350 157 43 24 67 0 0 chr6 83062358 83062403 -99352839 + AT_rich Low_complexity Low_complexity 1 45 0 1592 172 57 33 chr6 83062789 83063155 -99352087 - THE1C LTR MaLR 0 375 1 231 312 46 18 chr6 83063212 83063321 -99351921 - MIR SINE MIR -3 259 148 824 182 0 0 chr6 83063341 83063473 -99351769 - FLAM_C SINE Alu 0 133 2 379 345 29 14 chr6 83063477 83063616 -99351626 - MIR SINE MIR -102 160 20 288 335 53 19 chr6 83065067 83065276 -99349966 - L2 LINE L2 -1316 1998 1783 180 0 0 0 chr6 83065341 83065361 -99349881 + (T)n Simple_repeat Simple_repeat 1 20 0 349 288 114 0 chr6 83065714 83065846 -99349396 - MIR SINE MIR -45 217 71 2890 198 31 13 chr6 83066764 83067451 -99347791 + L1 LINE L1 4117 4815 -1331 * 5426 135 7 5 chr6 83067442 83068306 -99346936 + L1PA16 LINE L1 5301 6166 0 521 270 119 6 chr6 83068466 83068785 -99346457 - L1ME3A LINE L1 -218 5952 5415 2007 165 13 49 chr6 83068788 83068860 -99346382 - THE1C LTR MaLR -1 374 301 2223 126 0 0 chr6 83068860 83069161 -99346081 - AluSg SINE Alu -8 302 2 2007 165 13 49 chr6 83069161 83069476 -99345766 - THE1C LTR MaLR -74 301 1 9793 136 31 8 chr6 83069478 83071012 -99344230 - THE1C-int LTR MaLR -12 1568 1 2288 119 18 52 chr6 83071012 83071400 -99343842 - THE1C LTR MaLR 0 375 1 284 281 10 0 chr6 83071400 83071496 -99343746 - L1P LINE L1 -735 5416 5320 272 280 127 17 chr6 83071601 83071901 -99343341 - L1ME3A LINE L1 -1303 4843 4511 453 303 7 21 chr6 83071907 83072049 -99343193 + L2 LINE L2 1827 1966 -1348 705 317 128 47 chr6 83072196 83072663 -99342579 + L2 LINE L2 2804 3308 -5 27 73 0 0 chr6 83072847 83072902 -99342340 + AT_rich Low_complexity Low_complexity 1 55 0 409 266 142 12 chr6 83074107 83074276 -99340966 - L2 LINE L2 -972 2342 2152 902 237 97 55 chr6 83074699 83075121 -99340121 + LTR29 LTR ERV1 4 443 -179 213 238 0 0 chr6 83075121 83075201 -99340041 + T-rich Low_complexity Low_complexity 1 80 0 11885 166 24 57 chr6 83075202 83079619 -99335623 - L1PB1 LINE L1 -1 6866 2618 1027 140 27 11 chr6 83079619 83079822 -99335420 + LTR29 LTR ERV1 394 595 0 549 224 0 0 chr6 83080108 83080215 -99335027 + U6 snRNA snRNA 1 107 0 14058 220 17 10 chr6 83080221 83081637 -99333605 + L1PA15 LINE L1 1492 2897 -3269 1906 141 19 50 chr6 83081637 83082013 -99333229 + THE1B LTR MaLR 1 364 0 14058 220 17 10 chr6 83082013 83084768 -99330474 + L1PA15 LINE L1 2897 5689 -477 20509 103 5 11 chr6 83084768 83090812 -99324430 + L1PA7 LINE L1 250 6461 -8 1519 174 28 9 chr6 83090817 83091134 -99324108 + L1PA15 LINE L1 5675 5997 -168 579 200 158 14 chr6 83091143 83091358 -99323884 + MER20B DNA MER1_type 538 783 0 367 279 146 13 chr6 83091358 83091516 -99323726 - MIR SINE MIR -73 189 11 27 0 0 0 chr6 83092847 83092874 -99322368 + AT_rich Low_complexity Low_complexity 1 27 0 40221 39 22 1 chr6 83092893 83098916 -99316326 - L1PA2 LINE L1 -4 6151 2 1335 189 119 0 chr6 83099228 83099530 -99315712 - MER58B DNA MER1_type 0 341 4 419 209 99 20 chr6 83100336 83100537 -99314705 - L1MC5 LINE L1 -128 7833 7617 325 250 9 65 chr6 83100543 83100651 -99314591 - L1MC5 LINE L1 -406 7555 7454 5155 56 3 2 chr6 83100665 83101310 -99313932 - L1PA5 LINE L1 -15 6139 5494 35565 69 5 2 chr6 83101310 83106189 -99309053 - L1PA5 LINE L1 -1255 4891 1 1035 269 79 25 chr6 83106560 83107080 -99308162 + MER20B DNA MER1_type 165 712 -71 733 247 31 66 chr6 83107216 83107475 -99307767 - MIR SINE MIR 0 262 13 2242 116 0 0 chr6 83108394 83108688 -99306554 - AluSg SINE Alu -16 294 1 268 222 49 0 chr6 83109678 83109759 -99305483 - L1MC4 LINE L1 -1339 6703 6619 214 290 0 16 chr6 83110769 83110782 -99304460 - L2 LINE L2 0 3313 3301 2175 126 0 0 chr6 83110782 83111068 -99304174 - AluSx SINE Alu -26 286 1 214 290 0 16 chr6 83111068 83111116 -99304126 - L2 LINE L2 -12 3301 3253 1779 80 4 0 chr6 83111771 83112008 -99303234 - L1PA8 LINE L1 -1 6171 5934 202 258 33 60 chr6 83112238 83112331 -99302911 + GA-rich Low_complexity Low_complexity 4 93 -57 4758 185 13 11 chr6 83112331 83113248 -99301994 + MER49 LTR ERV1 5 923 0 202 258 33 60 chr6 83113248 83113305 -99301937 + GA-rich Low_complexity Low_complexity 93 150 0 2301 167 37 9 chr6 83115067 83115504 -99299738 + LTR42 LTR ERVL 1 449 -46 2312 84 7 0 chr6 83115509 83115807 -99299435 - AluSq SINE Alu -13 300 1 755 160 92 92 chr6 83116016 83116297 -99298945 - L1MA7 LINE L1 0 6291 6011 262 113 0 19 chr6 83116317 83116370 -99298872 - L1MA9 LINE L1 -1 6311 6260 203 306 73 16 chr6 83116451 83116575 -99298667 - L2 LINE L2 0 3313 3183 969 217 11 0 chr6 83118227 83118402 -99296840 - MER45A DNA AcHobo 0 178 2 1431 151 24 10 chr6 83118654 83118856 -99296386 - L1MA9 LINE L1 -12 6300 6091 358 77 231 0 chr6 83118856 83118921 -99296321 + MADE1 DNA Mariner 1 80 0 1431 151 24 10 chr6 83118921 83119010 -99296232 - L1MA9 LINE L1 -221 6091 6005 452 275 20 34 chr6 83120506 83120655 -99294587 + L2 LINE L2 3167 3313 0 250 229 29 43 chr6 83123408 83123478 -99291764 + MER5A DNA MER1_type 109 177 -12 27 0 0 0 chr6 83124309 83124336 -99290906 + AT_rich Low_complexity Low_complexity 1 27 0 7265 67 12 5 chr6 83125172 83131155 -99284087 - L1PA5 LINE L1 0 6154 1 22 35 0 0 chr6 83131212 83131241 -99284001 + AT_rich Low_complexity Low_complexity 1 29 0 329 225 22 22 chr6 83131410 83131499 -99283743 - L2 LINE L2 0 3313 3225 201 39 0 0 chr6 83132373 83132399 -99282843 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1809 290 104 5 chr6 83132983 83133539 -99281703 - MLT2E LTR ERVL -15 613 3 224 250 91 83 chr6 83133606 83133738 -99281504 + L2 LINE L2 3176 3308 -5 465 304 113 0 chr6 83134117 83134311 -99280931 + LTR33A LTR ERVL 297 512 -11 579 281 105 29 chr6 83134504 83134742 -99280500 + MIR SINE MIR 7 262 0 5798 82 7 12 chr6 83135021 83135834 -99279408 + L1PA6 LINE L1 4018 4826 -1320 6612 55 7 3 chr6 83135834 83136663 -99278579 + L1PA6 LINE L1 5301 6152 -2 180 0 0 0 chr6 83136967 83136987 -99278255 + (TA)n Simple_repeat Simple_repeat 2 21 0 7230 47 0 11 chr6 83136987 83138480 -99276762 - L1PA5 LINE L1 -8 6146 4661 270 269 25 57 chr6 83138606 83138741 -99276501 + MLT1J2 LTR MaLR 64 156 -294 452 285 104 14 chr6 83138790 83138934 -99276308 + MLT1J2 LTR MaLR 249 405 -45 256 247 0 65 chr6 83139019 83139096 -99276146 + L2 LINE L2 3192 3263 -9 1648 149 117 3 chr6 83139851 83140160 -99275082 - MER2 DNA MER2_type 0 344 1 2508 36 3 7 chr6 83140748 83141049 -99274193 + AluY SINE Alu 1 300 -11 345 360 83 71 chr6 83141151 83141487 -99273755 - L2 LINE L2 -1 3271 2932 1558 183 10 17 chr6 83142901 83143190 -99272052 + AluJo SINE Alu 1 287 -25 23 33 0 0 chr6 83144387 83144417 -99270825 + AT_rich Low_complexity Low_complexity 1 30 0 2508 94 11 0 chr6 83144417 83144780 -99270462 - L1PB1 LINE L1 -5 6146 5780 4133 80 56 5 chr6 83144833 83145742 -99269500 + MER11A LTR ERVK 165 1266 0 2999 78 2 2 chr6 83145742 83146153 -99269089 - L1PB1 LINE L1 -1363 4783 4373 180 111 0 0 chr6 83146174 83146201 -99269041 + (A)n Simple_repeat Simple_repeat 1 27 0 1299 142 24 5 chr6 83147389 83147600 -99267642 - MLT1B LTR MaLR -12 378 164 852 298 143 37 chr6 83147615 83148150 -99267092 - L2 LINE L2 -14 3299 2716 320 311 66 26 chr6 83148850 83149001 -99266241 + MIR3 SINE MIR 35 191 -17 1507 225 20 35 chr6 83149754 83149780 -99265462 - MLT2B3 LTR ERVL -76 478 453 1527 163 235 9 chr6 83149780 83149966 -99265276 - MSTA LTR MaLR 0 428 285 324 48 0 0 chr6 83149966 83150008 -99265234 + (GA)n Simple_repeat Simple_repeat 1 42 0 1527 163 235 9 chr6 83150008 83150170 -99265072 - MSTA LTR MaLR -143 285 1 1507 225 20 35 chr6 83150170 83150485 -99264757 - MLT2B3 LTR ERVL -101 453 142 795 188 5 48 chr6 83150461 83150647 -99264595 - MLT1B LTR MaLR -212 178 1 * 309 286 27 55 chr6 83150817 83151037 -99264205 + MER112 DNA MER1_type 8 221 -39 252 286 135 81 chr6 83151710 83152081 -99263161 - L2 LINE L2 -410 2904 2514 1095 232 96 16 chr6 83152506 83152881 -99262361 + L1PA15 LINE L1 11 415 -7166 4481 269 69 39 chr6 83152940 83154714 -99260528 + L1PA15 LINE L1 784 2611 -4970 1535 178 33 29 chr6 83154716 83154991 -99260251 - AluJo SINE Alu -31 281 6 14277 197 23 11 chr6 83155036 83158707 -99256535 + L1PA15 LINE L1 3528 7240 -363 966 127 0 0 chr6 83158707 83158849 -99256393 - FLAM_C SINE Alu -1 142 1 2348 123 31 0 chr6 83158849 83159208 -99256034 + L1PA15 LINE L1 7226 7595 -8 336 348 21 14 chr6 83161270 83161411 -99253831 + MIR SINE MIR 84 225 -37 4053 272 14 17 chr6 83162697 83164079 -99251163 + L1PA16 LINE L1 3051 4428 -3156 * 6350 71 2 0 chr6 83164078 83164894 -99250348 - L1PA6 LINE L1 -4 6150 5333 7617 182 48 70 chr6 83164894 83165746 -99249496 + L1PA16 LINE L1 4418 5288 -2316 2525 136 44 5 chr6 83165746 83166158 -99249084 - MSTA LTR MaLR 0 428 1 7617 182 48 70 chr6 83166158 83166493 -99248749 + L1PA16 LINE L1 5288 5629 -1975 795 69 0 0 chr6 83166493 83166595 -99248647 + L1PB1 LINE L1 6046 6147 -4 7617 182 48 70 chr6 83166595 83167855 -99247387 + L1PA16 LINE L1 5629 6782 -822 3226 88 49 16 chr6 83167855 83168344 -99246898 - L1PA13 LINE L1 -2 6161 5657 7617 182 48 70 chr6 83168344 83169149 -99246093 + L1PA16 LINE L1 6782 7604 0 961 136 9 61 chr6 83169408 83169622 -99245620 - L1MA8 LINE L1 -22 6269 6067 345 259 34 68 chr6 83170347 83170494 -99244748 + L2 LINE L2 2595 2736 -578 1543 177 16 10 chr6 83171096 83171714 -99243528 - L1PA14 LINE L1 -13 6148 5328 2366 122 46 58 chr6 83171721 83172220 -99243022 - L1MA8 LINE L1 -4 6287 5795 276 363 43 43 chr6 83172414 83172648 -99242594 - L2 LINE L2 -5 3267 3034 887 212 6 6 chr6 83172648 83172813 -99242429 + AluJo SINE Alu 122 286 -26 213 39 0 0 chr6 83173369 83173395 -99241847 + (TA)n Simple_repeat Simple_repeat 2 27 0 7002 54 0 5 chr6 83173395 83174347 -99240895 - L1PA6 LINE L1 -10 6144 5192 39 22 0 0 chr6 83174347 83174393 -99240849 + AT_rich Low_complexity Low_complexity 1 46 0 1676 194 37 0 chr6 83175420 83175719 -99239523 + AluJo SINE Alu 1 310 -2 295 250 14 14 chr6 83175825 83175897 -99239345 - MER115 DNA AcHobo -8 685 614 * 387 232 99 0 chr6 83175880 83176022 -99239220 - Zaphod DNA AcHobo -3241 790 635 1998 158 0 0 chr6 83176151 83176448 -99238794 + AluSx SINE Alu 1 297 -15 5427 101 11 13 chr6 83176509 83177305 -99237937 + L1PA10 LINE L1 5370 6164 -4 459 209 11 11 chr6 83177578 83177664 -99237578 - LTR16C LTR ERVL -13 478 393 1074 236 32 73 chr6 83177664 83178113 -99237129 + MLT2B1 LTR ERVL 1 411 -143 2230 134 30 21 chr6 83178113 83178485 -99236757 + THE1C LTR MaLR 1 375 0 1074 236 32 73 chr6 83178485 83178606 -99236636 + MLT2B1 LTR ERVL 411 535 -19 280 196 7 0 chr6 83178642 83178704 -99236538 + MLT2B3 LTR ERVL 451 553 -1 355 318 61 8 chr6 83178706 83178838 -99236404 - LTR16C LTR ERVL -117 374 236 11327 31 0 0 chr6 83179479 83181584 -99233658 + L1PA3 LINE L1 4051 6155 0 201 74 0 0 chr6 83181604 83181631 -99233611 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4117 190 52 17 chr6 83181851 83183207 -99232035 - L1MB2 LINE L1 0 6171 4786 322 284 90 7 chr6 83183211 83183500 -99231742 - HAL1 LINE L1 -837 1670 1221 249 57 0 0 chr6 83183790 83183825 -99231417 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9702 38 2 0 chr6 83183868 83185823 -99229419 - L1PA3 LINE L1 -3 6152 4197 602 128 73 9 chr6 83185951 83186060 -99229182 + FRAM SINE Alu 40 155 -21 377 203 0 0 chr6 83186156 83186225 -99229017 - HAL1 LINE L1 -1622 885 817 4580 135 18 6 chr6 83186293 83187026 -99228216 + L1P LINE L1 3409 4150 -1996 1069 291 170 19 chr6 83187068 83187645 -99227597 - HAL1 LINE L1 -1819 688 25 8974 88 9 1 chr6 83187723 83189519 -99225723 + L1PA7 LINE L1 4097 5908 -246 1986 220 25 26 chr6 83189621 83190234 -99225008 + L1M1 LINE L1 3008 3619 -3946 312 295 0 27 chr6 83190244 83190356 -99224886 + L1 LINE L1 4775 4883 -1263 * 1035 201 11 33 chr6 83190353 83190626 -99224616 + L1M1 LINE L1 3640 3906 -3659 2688 67 6 14 chr6 83192041 83192402 -99222840 + L1PA7 LINE L1 5793 6150 -4 526 223 76 13 chr6 83192438 83192662 -99222580 + L1M1 LINE L1 4464 4701 -2864 2708 196 74 8 chr6 83192666 83193318 -99221924 + L1M1 LINE L1 5206 5900 -1665 12001 48 0 4 chr6 83193453 83194979 -99220263 - L1P LINE L1 -789 5357 3838 2009 124 3 20 chr6 83195280 83195578 -99219664 + AluSq SINE Alu 1 293 -20 1176 325 139 14 chr6 83195580 83196312 -99218930 + L3 LINE CR1 746 1569 -8 395 309 68 58 chr6 83196657 83197055 -99218187 + L2 LINE L2 2243 2644 -670 25 51 0 0 chr6 83197319 83197358 -99217884 + AT_rich Low_complexity Low_complexity 1 39 0 1896 152 57 0 chr6 83197458 83197773 -99217469 - MER7A DNA MER2_type -6 340 10 222 300 25 0 chr6 83198362 83198442 -99216800 + (TATG)n Simple_repeat Simple_repeat 3 84 0 400 274 43 17 chr6 83199052 83199169 -99216073 - L2 LINE L2 -13 3300 3181 2414 65 0 29 chr6 83199592 83199901 -99215341 - AluY SINE Alu -11 300 1 236 377 18 9 chr6 83199940 83200054 -99215188 + L2 LINE L2 2725 2839 -475 1256 256 0 14 chr6 83200189 83200474 -99214768 - MLT1A1 LTR MaLR 0 365 85 31440 60 3 1 chr6 83200574 83204641 -99210601 + L1P LINE L1 221 4294 -1852 1915 109 4 0 chr6 83204741 83204997 -99210245 - AluSq SINE Alu -54 259 3 382 174 37 112 chr6 83206006 83206167 -99209075 + L1ME4a LINE L1 5961 6109 -12 22 0 0 0 chr6 83206215 83206237 -99209005 + AT_rich Low_complexity Low_complexity 1 22 0 13005 91 1 2 chr6 83206238 83208840 -99206402 - L1PA7 LINE L1 0 6154 3566 3750 159 41 45 chr6 83208840 83209649 -99205593 - L1MA9 LINE L1 -23 6289 5484 1381 176 44 0 chr6 83209781 83210053 -99205189 + L1MC3 LINE L1 7490 7773 -12 207 0 0 0 chr6 83210059 83210082 -99205160 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1169 169 0 0 chr6 83210219 83210397 -99204845 - AluJb SINE Alu -11 301 124 26 0 0 0 chr6 83210465 83210491 -99204751 + AT_rich Low_complexity Low_complexity 1 26 0 572 347 83 0 chr6 83211492 83211708 -99203534 + MIR SINE MIR 15 248 -14 5023 51 5 0 chr6 83211859 83212484 -99202758 + L1PA4 LINE L1 5527 6154 -1 5056 84 1 1 chr6 83212484 83213158 -99202084 + L1PA7 LINE L1 5476 6154 0 227 143 24 0 chr6 83213312 83213354 -99201888 + L1M4 LINE L1 3728 3770 -2376 21 0 0 0 chr6 83213427 83213448 -99201794 + AT_rich Low_complexity Low_complexity 1 21 0 27 87 0 0 chr6 83213779 83213848 -99201394 + AT_rich Low_complexity Low_complexity 1 69 0 330 105 184 0 chr6 83213904 83214042 -99201200 + Charlie5 DNA MER1_type 2367 2578 -34 2107 151 75 7 chr6 83214060 83214473 -99200769 - L1MA7 LINE L1 -7 6284 5842 198 221 58 70 chr6 83215204 83215290 -99199952 - L2 LINE L2 -2 3311 3227 181 330 53 11 chr6 83216954 83217048 -99198194 - MIR SINE MIR -4 258 161 4331 151 11 38 chr6 83217748 83218564 -99196678 + L1MB3 LINE L1 5368 6161 -22 192 361 60 0 chr6 83218934 83219017 -99196225 + MIR SINE MIR 119 206 -56 7759 209 37 53 chr6 83219093 83221622 -99193620 + L1MA4 LINE L1 13 3619 -3946 531 221 0 0 chr6 83221632 83221736 -99193506 + L1 LINE L1 4775 4878 -1268 3222 190 26 32 chr6 83221740 83222554 -99192688 + L1MA4 LINE L1 3643 4451 -3114 6427 121 8 13 chr6 83222575 83223785 -99191457 + L1P3 LINE L1 844 2060 -4401 * 10511 90 25 1 chr6 83223784 83225617 -99189625 + L1P3 LINE L1 4168 6042 -427 5003 166 29 46 chr6 83225729 83227687 -99187555 + L1MA4 LINE L1 5793 7713 -6 21 71 0 0 chr6 83227693 83227735 -99187507 + AT_rich Low_complexity Low_complexity 1 42 0 393 267 14 27 chr6 83227737 83227812 -99187430 + HAL1b LINE L1 695 769 -579 2116 130 0 3 chr6 83227812 83228119 -99187123 + AluSx SINE Alu 1 306 -6 393 267 14 27 chr6 83228119 83228189 -99187053 + HAL1b LINE L1 769 838 -510 9351 166 43 14 chr6 83228271 83229951 -99185291 + L1PA15-16 LINE L1 790 2518 -4331 7511 169 88 14 chr6 83229962 83231385 -99183857 + L1 LINE L1 1111 2639 -4926 9170 184 20 40 chr6 83231397 83232698 -99182544 + L1 LINE L1 4679 5926 -1639 1202 40 25 10 chr6 83232698 83232897 -99182345 + (GAAA)n Simple_repeat Simple_repeat 1 201 0 9170 184 20 40 chr6 83232897 83233698 -99181544 + L1 LINE L1 5926 6741 -824 4077 208 18 1 chr6 83233712 83234623 -99180619 - L1 LINE L1 -1097 5049 4124 3429 162 26 19 chr6 83234650 83235337 -99179905 + MER67C LTR ERV1 19 710 0 27 62 0 0 chr6 83236764 83236812 -99178430 + AT_rich Low_complexity Low_complexity 1 48 0 1867 140 51 29 chr6 83236917 83237232 -99178010 - THE1B LTR MaLR 0 364 43 511 296 121 25 chr6 83237261 83237460 -99177782 + MIR SINE MIR 34 251 -11 387 230 0 46 chr6 83238204 83238291 -99176951 + L2 LINE L2 3230 3312 -1 1836 125 131 0 chr6 83238799 83239104 -99176138 + L1PA16 LINE L1 5813 6157 -9 698 354 82 34 chr6 83239574 83239989 -99175253 - L2 LINE L2 -5 3267 2833 * 902 314 115 17 chr6 83239982 83240459 -99174783 - L2 LINE L2 -616 2698 2175 1974 149 27 29 chr6 83241199 83241574 -99173668 - THE1C LTR MaLR 0 375 2 7617 166 121 3 chr6 83241585 83243057 -99172185 - THE1C-int LTR MaLR -3 1648 3 2057 147 24 27 chr6 83243059 83243434 -99171808 - THE1C LTR MaLR 0 375 2 422 169 96 0 chr6 83243871 83243954 -99171288 - MLT1A1 LTR MaLR -272 93 3 597 200 0 0 chr6 83244077 83244182 -99171060 + MST-int LTR MaLR 751 855 -796 2744 135 0 33 chr6 83244213 83244673 -99170569 + L1PA15 LINE L1 5718 6162 -3 204 240 0 0 chr6 83244786 83244836 -99170406 + A-rich Low_complexity Low_complexity 5 54 0 236 313 43 26 chr6 83244995 83245110 -99170132 + MIR SINE MIR 76 192 -70 658 237 191 9 chr6 83245173 83245257 -99169985 + MIR SINE MIR 5 72 -190 689 238 61 0 chr6 83245257 83245421 -99169821 - MER45A DNA AcHobo -4 174 1 658 237 191 9 chr6 83245421 83245551 -99169691 + MIR SINE MIR 72 258 -4 919 191 170 70 chr6 83245653 83245983 -99169259 + MLT1A1 LTR MaLR 3 365 0 7878 253 69 9 chr6 83247350 83249925 -99165317 + L1P4 LINE L1 2735 5475 -1374 2176 90 0 3 chr6 83249905 83250206 -99165036 + L1PA8A LINE L1 5805 6104 -27 * 266 26 53 0 chr6 83250211 83250249 -99164993 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 2972 174 19 2 chr6 83250249 83251251 -99163991 + L1P4 LINE L1 5440 6458 -411 1704 178 78 28 chr6 83251252 83251596 -99163646 - L1MA8 LINE L1 -152 6139 5765 333 0 0 0 chr6 83251596 83251633 -99163609 + (TG)n Simple_repeat Simple_repeat 2 38 0 1704 178 78 28 chr6 83251633 83251748 -99163494 - L1MA8 LINE L1 -526 5765 5657 391 320 26 19 chr6 83251816 83251972 -99163270 + MIR SINE MIR 57 213 -49 1316 292 94 9 chr6 83252295 83252930 -99162312 + L2 LINE L2 2453 3141 -172 1801 142 33 0 chr6 83252944 83253219 -99162023 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 83253220 83253241 -99162001 + AT_rich Low_complexity Low_complexity 1 21 0 1479 162 24 0 chr6 83253241 83253494 -99161748 - MER2 DNA MER2_type -85 260 2 1549 244 45 66 chr6 83253624 83254192 -99161050 - MLT1F1 LTR MaLR 0 567 1 275 360 173 5 chr6 83255102 83255513 -99159729 + L2 LINE L2 1826 2305 -1009 257 325 190 20 chr6 83255663 83255863 -99159379 + L2 LINE L2 2554 2787 -527 407 121 48 0 chr6 83256321 83256404 -99158838 - L1MA9 LINE L1 -10 6302 6216 1530 146 35 17 chr6 83256407 83256695 -99158547 - L1MA8 LINE L1 -136 6155 5863 21 0 0 0 chr6 83257968 83257989 -99157253 + AT_rich Low_complexity Low_complexity 1 21 0 190 274 123 57 chr6 83259426 83259532 -99155710 + MIR SINE MIR 112 224 -38 196 325 43 26 chr6 83260093 83260210 -99155032 + L2 LINE L2 2684 2802 -512 1738 149 80 17 chr6 83260447 83260796 -99154446 - THE1C LTR MaLR -4 371 1 1617 108 18 0 chr6 83261553 83261775 -99153467 + AluSg/x SINE Alu 85 310 -2 2158 150 50 77 chr6 83262494 83262748 -99152494 - MSTA LTR MaLR 0 428 190 4706 50 3 0 chr6 83262748 83263326 -99151916 - L1PA6 LINE L1 0 6154 5575 2158 150 50 77 chr6 83263326 83263511 -99151731 - MSTA LTR MaLR -238 190 1 6656 226 78 46 chr6 83264118 83265286 -99149956 - L1M LINE L1 -767 5379 4251 2276 87 0 3 chr6 83265286 83265575 -99149667 - AluY SINE Alu -22 289 2 6656 226 78 46 chr6 83265575 83266818 -99148424 - L1M LINE L1 -1895 4251 2895 3190 160 33 12 chr6 83268018 83268598 -99146644 - L1PA16 LINE L1 -1 6165 5574 1052 189 72 89 chr6 83269403 83269762 -99145480 - MLT1A1 LTR MaLR 0 365 13 21 0 0 0 chr6 83270703 83270724 -99144518 + AT_rich Low_complexity Low_complexity 1 21 0 331 303 0 28 chr6 83270792 83270901 -99144341 - L2 LINE L2 0 3313 3208 908 166 42 177 chr6 83271267 83271825 -99143417 - Charlie1 DNA MER1_type -1 2760 1 2276 135 8 27 chr6 83272006 83272377 -99142865 - THE1B LTR MaLR 0 364 1 440 275 39 23 chr6 83272959 83273168 -99142074 - LTR33 LTR ERVL 0 521 289 310 287 11 11 chr6 83273279 83273366 -99141876 - LTR33 LTR ERVL -373 148 62 1572 95 86 14 chr6 83273499 83273721 -99141521 + AluSc SINE Alu 12 249 -60 586 262 105 107 chr6 83273728 83274243 -99140999 + ERVL LTR ERVL 2131 2644 -3120 255 356 67 36 chr6 83274388 83274582 -99140660 + ERVL LTR ERVL 2801 3000 -1996 24 53 0 0 chr6 83275414 83275452 -99139790 + AT_rich Low_complexity Low_complexity 1 38 0 780 177 0 14 chr6 83275685 83275826 -99139416 - MLT1A1 LTR MaLR 0 365 227 316 271 0 12 chr6 83275866 83275951 -99139291 - MLT1A1 LTR MaLR -218 147 64 26 0 0 0 chr6 83276223 83276249 -99138993 + AT_rich Low_complexity Low_complexity 1 26 0 250 269 0 0 chr6 83277523 83277575 -99137667 + L2 LINE L2 3209 3260 -12 579 12 38 0 chr6 83279310 83279390 -99135852 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 282 269 0 0 chr6 83279887 83279954 -99135288 - MER63 DNA MER1_type -326 736 44 24 53 0 0 chr6 83280340 83280378 -99134864 + AT_rich Low_complexity Low_complexity 1 38 0 436 259 227 19 chr6 83280413 83280629 -99134613 - MIR SINE MIR 0 262 2 22 0 0 0 chr6 83281962 83281984 -99133258 + AT_rich Low_complexity Low_complexity 1 22 0 180 259 24 47 chr6 83282252 83282337 -99132905 + MIR3 SINE MIR 125 207 -1 24 0 0 0 chr6 83283300 83283324 -99131918 + AT_rich Low_complexity Low_complexity 1 24 0 5698 139 30 2 chr6 83283774 83284703 -99130539 - L1MC1 LINE L1 0 6333 5379 1553 151 39 3 chr6 83284705 83284989 -99130253 - AluSx SINE Alu -14 298 5 2436 60 0 0 chr6 83384992 83385275 -99029967 - AluY SINE Alu -28 283 1 252 221 44 15 chr6 83385762 83385830 -99029412 + MLT1K LTR MaLR 511 580 -8 2172 78 0 0 chr6 83386714 83386997 -99028245 + AluY SINE Alu 28 310 -1 25 0 0 0 chr6 83388015 83388040 -99027202 + AT_rich Low_complexity Low_complexity 1 25 0 282 275 35 42 chr6 83388475 83388617 -99026625 + L1ME LINE L1 5562 5702 -419 348 330 0 0 chr6 83388674 83388765 -99026477 + Tigger5 DNA MER2_type 1 91 -2232 407 194 28 0 chr6 83388814 83388886 -99026356 + Tigger5 DNA MER2_type 2250 2323 0 * 507 157 45 0 chr6 83388886 83388967 -99026275 + U6 snRNA snRNA 23 107 0 625 277 84 4 chr6 83388968 83389206 -99026036 + L1M4c LINE L1 1400 1656 -4728 1957 195 31 35 chr6 83389206 83389657 -99025585 - L1MD1 LINE L1 -100 6142 5694 1425 220 78 72 chr6 83389674 83390524 -99024718 + L1MA7 LINE L1 2905 3760 -3805 8366 180 32 9 chr6 83390525 83390557 -99024685 + L1MA7 LINE L1 5017 5047 -2663 1577 115 5 0 chr6 83390557 83390795 -99024447 - AluSp SINE Alu 0 313 75 8366 180 32 9 chr6 83390795 83393410 -99021832 + L1MA7 LINE L1 5047 7710 0 21 36 0 0 chr6 83393591 83393619 -99021623 + AT_rich Low_complexity Low_complexity 1 28 0 366 235 49 34 chr6 83393892 83394025 -99021217 + LTR40a LTR ERVL 229 425 -94 486 255 62 0 chr6 83394109 83394254 -99020988 + MIR SINE MIR 99 252 -10 244 220 0 0 chr6 83394259 83394309 -99020933 + (CAT)n Simple_repeat Simple_repeat 2 51 0 295 279 0 0 chr6 83394394 83394511 -99020731 + L1MC4 LINE L1 7901 7995 0 315 316 17 2 chr6 83396047 83396276 -99018966 - MLT1L LTR MaLR -346 269 1 428 315 197 23 chr6 83397426 83397817 -99017425 + LTR67 LTR ERVL 97 555 -2 6729 133 80 2 chr6 83398201 83399050 -99016192 + Tigger3b DNA MER2_type 2 964 -2064 5373 50 1 0 chr6 83399050 83399708 -99015534 - L1PA5 LINE L1 0 6154 5496 6729 133 80 2 chr6 83399708 83399998 -99015244 + Tigger3b DNA MER2_type 964 1230 -1 574 318 83 56 chr6 83400487 83400968 -99014274 + LTR33 LTR ERVL 23 516 -5 323 320 47 41 chr6 83402157 83402329 -99012913 + L2 LINE L2 2588 2760 -554 193 323 0 0 chr6 83402336 83402398 -99012844 + MIR SINE MIR 130 191 -71 2351 112 0 0 chr6 83402414 83402726 -99012516 + AluSx SINE Alu 1 312 0 345 401 5 0 chr6 83403720 83403927 -99011315 + L2 LINE L2 2746 2953 -361 546 118 0 12 chr6 83404069 83404154 -99011088 + MER11B LTR ERVK 498 581 -655 14887 36 7 1 chr6 83404154 83406026 -99009216 + L1P2 LINE L1 3580 5456 -699 565 111 0 22 chr6 83406026 83406116 -99009126 + MER11A LTR ERVK 1179 1266 0 416 254 60 9 chr6 83406119 83406279 -99008963 + LTR45B LTR ERV1 306 517 -14 1138 211 15 4 chr6 83406658 83406918 -99008324 - L1PB4 LINE L1 -3 6153 5891 5305 134 27 5 chr6 83406923 83408096 -99007146 - L1PA14 LINE L1 -4 6157 4976 10845 232 66 69 chr6 83408096 83409090 -99006152 - L1M2 LINE L1 -240 6593 5597 310 106 22 50 chr6 83409090 83409162 -99006080 + MADE1 DNA Mariner 1 43 -37 10845 232 66 69 chr6 83409162 83409891 -99005351 - L1M2 LINE L1 -1236 5597 4867 2535 107 16 139 chr6 83409891 83410444 -99004798 + LTR22B LTR ERVK 5 489 -3 10845 232 66 69 chr6 83410444 83411638 -99003604 - L1M2 LINE L1 -1966 4867 3671 2789 19 0 0 chr6 83411638 83411948 -99003294 - AluY SINE Alu -1 310 1 10845 232 66 69 chr6 83411948 83415520 -98999722 - L1M2 LINE L1 -3162 3671 1 2260 93 14 0 chr6 83416183 83416474 -98998768 + AluSc SINE Alu 3 297 -12 214 274 0 24 chr6 83416713 83416797 -98998445 + A-rich Low_complexity Low_complexity 3 84 0 22 0 0 0 chr6 83417262 83417284 -98997958 + AT_rich Low_complexity Low_complexity 1 22 0 227 252 90 18 chr6 83419115 83419226 -98996016 - L1ME4a LINE L1 -2 6119 6001 2160 108 3 0 chr6 83419712 83420000 -98995242 + AluSq SINE Alu 1 289 -24 3034 121 7 0 chr6 83421425 83421856 -98993386 + MER57B LTR ERV1 1 434 0 2163 196 30 6 chr6 83424790 83425316 -98989926 - LTR27 LTR ERV1 -11 493 3 202 264 160 56 chr6 83425546 83425671 -98989571 - L2 LINE L2 -1 3312 3175 239 370 74 19 chr6 83425757 83425973 -98989269 - L2 LINE L2 -221 3051 2824 217 329 155 12 chr6 83426178 83426339 -98988903 - L2 LINE L2 -782 2532 2349 456 248 17 8 chr6 83426362 83426479 -98988763 - FLAM_C SINE Alu -13 120 3 259 235 49 49 chr6 83427193 83427295 -98987947 + HAL1b LINE L1 773 874 -474 265 275 181 6 chr6 83427393 83427564 -98987678 + HAL1 LINE L1 2168 2368 -139 1771 253 57 29 chr6 83428504 83429313 -98985929 + MER69B DNA AcHobo 3 898 -1628 8107 66 14 5 chr6 83429313 83430374 -98984868 + MER11C LTR ERVK 1 1071 0 1771 253 57 29 chr6 83430374 83430499 -98984743 + MER69B DNA AcHobo 898 1018 -208 613 222 52 16 chr6 83431042 83431236 -98984006 + MER69B DNA AcHobo 1026 1226 0 460 301 75 14 chr6 83432018 83432231 -98983011 - MIR SINE MIR -9 253 28 386 158 24 24 chr6 83432339 83432421 -98982821 - MIR SINE MIR -1 261 180 1495 150 80 15 chr6 83432424 83432751 -98982491 + L1MA8 LINE L1 5941 6288 -3 1269 284 100 89 chr6 83435551 83437266 -98977976 + HAL1 LINE L1 20 1752 -755 339 25 0 0 chr6 83437361 83437401 -98977841 + (CA)n Simple_repeat Simple_repeat 1 40 0 2862 218 185 70 chr6 83437749 83438921 -98976321 + MER52A LTR ERV1 1 1307 -448 393 168 8 48 chr6 83438891 83439016 -98976226 + LTR28 LTR ERV1 570 689 -331 * 2586 180 20 75 chr6 83439014 83439598 -98975644 + MER52A LTR ERV1 1204 1755 0 770 283 130 18 chr6 83439811 83440310 -98974932 + HAL1b LINE L1 122 676 -672 3663 96 30 9 chr6 83440528 83441093 -98974149 + L1MA1 LINE L1 5726 6302 0 229 132 29 29 chr6 83441104 83441172 -98974070 + A-rich Low_complexity Low_complexity 6 73 0 201 74 0 0 chr6 83441698 83441725 -98973517 + (A)n Simple_repeat Simple_repeat 1 27 0 22 88 0 0 chr6 83441860 83441917 -98973325 + AT_rich Low_complexity Low_complexity 1 57 0 297 327 242 5 chr6 83442007 83442218 -98973024 + MIR SINE MIR 2 262 0 2239 84 3 26 chr6 83442547 83442857 -98972385 - AluSp SINE Alu -10 303 1 200 211 0 0 chr6 83443730 83443768 -98971474 - MIR SINE MIR -56 152 115 264 267 22 117 chr6 83444833 83445013 -98970229 - MIR SINE MIR -44 218 56 2073 128 0 0 chr6 83445320 83445610 -98969632 - AluSx SINE Alu -12 300 11 522 305 25 13 chr6 83445630 83445869 -98969373 + L1MA9 LINE L1 6062 6303 -9 532 246 48 0 chr6 83445877 83446003 -98969239 + MER5B DNA MER1_type 2 133 -45 180 125 0 0 chr6 83449613 83449645 -98965597 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 222 37 0 0 chr6 83449798 83449825 -98965417 + (TG)n Simple_repeat Simple_repeat 2 28 0 291 331 124 6 chr6 83450247 83450416 -98964826 - MIR SINE MIR -72 190 2 313 273 30 48 chr6 83451054 83451219 -98964023 - L1ME4a LINE L1 -6 6098 5937 615 214 86 41 chr6 83451345 83451565 -98963677 - L1ME4a LINE L1 -349 5755 5526 223 271 0 17 chr6 83451756 83451815 -98963427 + L2 LINE L2 3256 3313 0 202 320 98 33 chr6 83451912 83452034 -98963208 - MIR3 SINE MIR -67 141 12 564 292 34 11 chr6 83452442 83452620 -98962622 - MER5A DNA MER1_type 0 189 8 192 371 0 16 chr6 83452634 83452696 -98962546 - MIR SINE MIR -182 80 20 260 343 40 0 chr6 83452910 83453009 -98962233 - MIR3 SINE MIR -3 205 103 224 59 29 0 chr6 83454220 83454254 -98960988 + (TAA)n Simple_repeat Simple_repeat 2 36 0 197 285 113 66 chr6 83454286 83454437 -98960805 - MIR SINE MIR -49 213 56 533 304 79 14 chr6 83455278 83455492 -98959750 + MIR SINE MIR 29 256 -6 224 350 21 21 chr6 83455473 83455570 -98959672 - MIR SINE MIR -73 135 39 * 2277 135 32 0 chr6 83455676 83456024 -98959218 - THE1B LTR MaLR -5 359 1 23 0 0 0 chr6 83456647 83456670 -98958572 + AT_rich Low_complexity Low_complexity 1 23 0 379 299 81 15 chr6 83456902 83457099 -98958143 - L1ME3A LINE L1 -209 5961 5752 491 275 132 31 chr6 83457215 83457671 -98957571 - L1ME4a LINE L1 -646 5503 4989 339 323 82 28 chr6 83457679 83457961 -98957281 - L1ME4a LINE L1 -1203 4926 4630 456 148 39 8 chr6 83458060 83458188 -98957054 + (TA)n Simple_repeat Simple_repeat 2 133 0 1145 309 75 33 chr6 83458188 83458512 -98956730 - L1ME4a LINE L1 -1506 4623 4314 3582 121 86 14 chr6 83458512 83459140 -98956102 + L1MA8 LINE L1 5606 6278 -13 2091 103 75 32 chr6 83459146 83459494 -98955748 - THE1B LTR MaLR -1 363 1 1145 309 75 33 chr6 83459494 83460512 -98954730 - L1ME4a LINE L1 -1819 4310 3203 231 292 188 19 chr6 83460530 83460838 -98954404 - L1ME4a LINE L1 -2946 3183 2824 1453 164 38 0 chr6 83461516 83461808 -98953434 - L1MA8 LINE L1 -2 6289 5987 2136 151 17 0 chr6 83461905 83462257 -98952985 - MER46B DNA MER2_type -3 233 1 5560 174 34 16 chr6 83462319 83464330 -98950912 - L1MA9 LINE L1 -25 6287 4239 617 312 59 17 chr6 83464522 83465057 -98950185 - L1MEd LINE L1 -3549 2580 2065 1139 173 0 0 chr6 83465070 83465267 -98949975 + L1PB1 LINE L1 1 197 -6666 13912 160 51 21 chr6 83465270 83466604 -98948638 + L1PB1 LINE L1 636 1929 -4938 2311 98 0 3 chr6 83466604 83466909 -98948333 + AluY SINE Alu 1 304 -7 13912 160 51 21 chr6 83466909 83471614 -98943628 + L1PB1 LINE L1 1929 6860 -7 42 36 0 0 chr6 83471618 83471674 -98943568 + AT_rich Low_complexity Low_complexity 1 56 0 554 187 26 9 chr6 83471674 83471808 -98943434 + L1MC4 LINE L1 7561 7788 -207 37 39 0 0 chr6 83471831 83471882 -98943360 + AT_rich Low_complexity Low_complexity 1 51 0 1214 296 100 46 chr6 83472259 83473447 -98941795 - L1MEd LINE L1 -4704 1606 323 2285 151 26 0 chr6 83473516 83473900 -98941342 + MER57A LTR ERV1 1 394 -9 248 208 0 13 chr6 83474153 83474230 -98941012 + (TA)n Simple_repeat Simple_repeat 2 77 0 1347 141 21 6 chr6 83475579 83475944 -98939298 - LTR19A LTR ERV1 0 486 1 349 312 52 29 chr6 83476623 83476796 -98938446 - MIR SINE MIR -23 239 63 232 258 67 45 chr6 83476987 83477076 -98938166 + MIR SINE MIR 98 188 -74 1222 276 123 39 chr6 83477294 83478157 -98937085 - L1M4 LINE L1 -2620 3526 2592 412 285 146 0 chr6 83478445 83478568 -98936674 + L2 LINE L2 3169 3309 -4 2680 203 20 6 chr6 83479959 83480501 -98934741 + MER44D DNA MER2_type 1 605 0 1808 269 84 28 chr6 83480631 83481420 -98933822 - L1ME3A LINE L1 -5 6165 5333 290 241 11 23 chr6 83481439 83481526 -98933716 - ERVL LTR ERVL -1719 4045 3960 479 366 90 20 chr6 83481815 83482170 -98933072 - ERVL LTR ERVL -2145 3509 3130 531 303 61 79 chr6 83482209 83482486 -98932756 - LTR67 LTR ERVL -189 368 97 261 0 0 0 chr6 83483072 83483101 -98932141 + (CA)n Simple_repeat Simple_repeat 2 30 0 351 295 115 32 chr6 83485006 83485318 -98929924 - L1ME4a LINE L1 -92 6029 5692 228 273 81 0 chr6 83485399 83485498 -98929744 - L1ME4a LINE L1 -82 6039 5933 193 231 141 51 chr6 83485666 83485744 -98929498 + MIR SINE MIR 165 249 -13 1433 193 15 4 chr6 83485874 83486138 -98929104 + AluJb SINE Alu 1 267 -45 197 158 66 26 chr6 83486143 83486219 -98929023 + GA-rich Low_complexity Low_complexity 5 83 0 310 314 16 0 chr6 83486244 83486365 -98928877 - L1ME4a LINE L1 -460 5661 5539 837 257 135 6 chr6 83486380 83486707 -98928535 + Charlie7 DNA MER1_type 2023 2391 -221 2090 126 0 3 chr6 83487037 83487331 -98927911 + AluSg SINE Alu 1 293 -17 1450 204 61 29 chr6 83487351 83487694 -98927548 + MLT1A1 LTR MaLR 1 354 -11 2065 129 13 0 chr6 83488300 83488602 -98926640 - AluSq SINE Alu -7 306 1 405 332 70 32 chr6 83488798 83488985 -98926257 + MIR SINE MIR 65 258 -4 21 36 0 0 chr6 83489606 83489634 -98925608 + AT_rich Low_complexity Low_complexity 1 28 0 389 333 75 0 chr6 83489836 83489983 -98925259 + L2 LINE L2 3156 3313 0 23 0 0 0 chr6 83490057 83490080 -98925162 + AT_rich Low_complexity Low_complexity 1 23 0 596 153 29 58 chr6 83490136 83490273 -98924969 - MER77 LTR ERV1 -4 601 469 215 239 0 30 chr6 83491520 83491587 -98923655 + GA-rich Low_complexity Low_complexity 2 66 0 1773 169 0 29 chr6 83491904 83492211 -98923031 + AluJb SINE Alu 1 298 -14 243 203 17 17 chr6 83492937 83492996 -98922246 + L1P LINE L1 4183 4241 -1905 283 300 69 8 chr6 83493517 83493647 -98921595 + L1M LINE L1 5265 5402 -719 413 284 63 91 chr6 83494425 83494478 -98920764 - MIR SINE MIR -3 259 206 2186 55 51 10 chr6 83494478 83494770 -98920472 - AluY SINE Alu -7 304 1 413 284 63 91 chr6 83494770 83494970 -98920272 - MIR SINE MIR -56 206 13 222 355 54 21 chr6 83495476 83495569 -98919673 + L2 LINE L2 3158 3253 -19 395 237 89 0 chr6 83496650 83496785 -98918457 - L1ME4a LINE L1 -6 6115 5969 641 309 27 34 chr6 83498097 83498395 -98916847 - L1ME4a LINE L1 -304 5817 5522 1413 205 36 113 chr6 83498545 83499102 -98916140 + MER67D LTR ERV1 1 514 0 1348 114 50 5 chr6 83499293 83499397 -98915845 - MER30 DNA MER1_type 0 230 132 216 0 0 0 chr6 83499397 83499421 -98915821 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1348 114 50 5 chr6 83499421 83499536 -98915706 - MER30 DNA MER1_type -98 132 1 200 336 96 19 chr6 83499536 83499640 -98915602 + MIR3 SINE MIR 82 193 -15 22 0 0 0 chr6 83499903 83499925 -98915317 + AT_rich Low_complexity Low_complexity 1 22 0 3650 96 45 0 chr6 83500098 83500628 -98914614 + MER41A LTR ERV1 1 554 0 240 204 61 0 chr6 83500970 83501019 -98914223 - L2 LINE L2 -4 3268 3217 2051 159 28 6 chr6 83501920 83502273 -98912969 + MLT1A1 LTR MaLR 1 361 -4 207 256 8 152 chr6 83502791 83502916 -98912326 + MER5B DNA MER1_type 5 111 -67 1991 213 87 69 chr6 83503159 83503780 -98911462 - MLT1E1 LTR MaLR -10 644 13 222 309 36 0 chr6 83503788 83503872 -98911370 + MIR SINE MIR 90 176 -86 1545 142 56 17 chr6 83503915 83504203 -98911039 - AluJo SINE Alu -13 299 1 43 0 0 0 chr6 83504907 83504950 -98910292 + AT_rich Low_complexity Low_complexity 1 43 0 457 297 196 46 chr6 83505426 83505860 -98909382 - L2 LINE L2 -7 3306 2808 1392 209 18 14 chr6 83506310 83506593 -98908649 + AluJb SINE Alu 1 284 -28 437 152 0 0 chr6 83506596 83506662 -98908580 + AluJ/FRAM SINE Alu 230 295 -17 1879 215 97 77 chr6 83506889 83507516 -98907726 - L1ME3A LINE L1 -26 6144 5505 21 0 0 0 chr6 83508832 83508853 -98906389 + AT_rich Low_complexity Low_complexity 1 21 0 578 267 42 46 chr6 83509245 83509507 -98905735 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 83509620 83509641 -98905601 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 83509746 83509775 -98905467 + AT_rich Low_complexity Low_complexity 1 29 0 201 297 29 58 chr6 83509874 83510012 -98905230 + MIR SINE MIR 20 153 -55 405 148 0 25 chr6 83510082 83510163 -98905079 + L1MA8 LINE L1 3887 3965 -2181 * 14310 182 35 27 chr6 83510146 83510953 -98904289 + L1MA6 LINE L1 2252 3051 -3249 2038 134 0 6 chr6 83510953 83511267 -98903975 + AluSx SINE Alu 1 312 0 14310 182 35 27 chr6 83511267 83514480 -98900762 + L1MA6 LINE L1 3051 6299 -1 981 192 72 0 chr6 83514492 83514700 -98900542 + L1MA8 LINE L1 3951 4173 -1973 3365 41 24 0 chr6 83514700 83515112 -98900130 + MER11C LTR ERVK 1 422 -649 6203 176 41 22 chr6 83515113 83517218 -98898024 + L1MA9 LINE L1 4097 6311 -1 22 70 0 0 chr6 83518392 83518435 -98896807 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 83518995 83519016 -98896226 + AT_rich Low_complexity Low_complexity 1 21 0 2223 23 0 0 chr6 83519022 83519283 -98895959 - L1PA2 LINE L1 -1 6154 5894 673 25 0 0 chr6 83519283 83519362 -98895880 + L1PA2 LINE L1 5820 5898 -257 295 328 60 26 chr6 83519792 83519908 -98895334 - L2 LINE L2 0 3313 3194 357 275 80 29 chr6 83520094 83520232 -98895010 - L2 LINE L2 0 3313 3169 192 205 13 26 chr6 83521200 83521278 -98893964 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 775 245 31 87 chr6 83521954 83522276 -98892966 + L2 LINE L2 3010 3313 0 617 188 0 0 chr6 83522393 83522494 -98892748 + FLAM_A SINE Alu 1 101 -41 23 86 0 0 chr6 83522696 83522754 -98892488 + AT_rich Low_complexity Low_complexity 1 58 0 240 200 0 0 chr6 83522882 83522932 -98892310 + (TG)n Simple_repeat Simple_repeat 1 50 0 381 198 0 0 chr6 83524525 83524611 -98890631 + CT-rich Low_complexity Low_complexity 1 86 0 4559 134 22 30 chr6 83524780 83525614 -98889628 - L1MA4A LINE L1 -182 6121 5295 4649 169 27 10 chr6 83525614 83526554 -98888688 + L1MA8 LINE L1 4199 5154 -992 329 303 62 51 chr6 83527818 83527996 -98887246 - MIR SINE MIR 0 262 83 31 0 0 0 chr6 83528089 83528120 -98887122 + AT_rich Low_complexity Low_complexity 1 31 0 1766 118 7 18 chr6 83528331 83528603 -98886639 - AluSc SINE Alu 0 309 41 24 53 0 0 chr6 83528605 83528643 -98886599 + AT_rich Low_complexity Low_complexity 1 38 0 3818 153 26 30 chr6 83528791 83529564 -98885678 + L1MA8 LINE L1 5522 6291 0 718 150 0 0 chr6 83529747 83529869 -98885373 - AluSg/x SINE Alu -1 311 192 493 343 39 11 chr6 83530003 83530184 -98885058 + MIR3 SINE MIR 10 195 -13 319 252 58 52 chr6 83530471 83530626 -98884616 - MLT1J LTR MaLR -31 480 325 491 327 18 25 chr6 83530772 83531153 -98884089 - L1MC4a LINE L1 -414 7394 7034 1628 197 87 56 chr6 83531173 83531670 -98883572 - MER67D LTR ERV1 0 514 3 322 287 11 0 chr6 83531727 83531814 -98883428 - MLT1J LTR MaLR -200 311 224 18850 162 49 7 chr6 83532907 83536739 -98878503 + L1M1 LINE L1 10 4003 -3562 15387 161 24 22 chr6 83536738 83540941 -98874301 + L1PA8A LINE L1 90 4350 -2111 * 41154 49 3 4 chr6 83540969 83547124 -98868118 + L1PA4 LINE L1 7 6152 -3 7959 133 9 18 chr6 83547136 83549202 -98866040 + L1PA8A LINE L1 4383 6446 0 12352 176 32 17 chr6 83549202 83549577 -98865665 + L1M1 LINE L1 4008 4376 -3342 2260 112 60 11 chr6 83549577 83549924 -98865318 - THE1B LTR MaLR 0 364 1 12352 176 32 17 chr6 83549924 83552332 -98862910 + L1M1 LINE L1 4376 6821 -897 3427 83 6 0 chr6 83552332 83552796 -98862446 + L1PA13 LINE L1 5694 6163 0 12352 176 32 17 chr6 83552796 83552935 -98862307 + L1M1 LINE L1 6821 6956 -762 5811 158 22 7 chr6 83652937 83653915 -98761327 + L1PB1 LINE L1 4800 5802 -349 367 19 0 37 chr6 83653915 83653969 -98761273 + (TA)n Simple_repeat Simple_repeat 2 53 0 5811 158 22 7 chr6 83653969 83654324 -98760918 + L1PB1 LINE L1 5802 6150 -1 2078 158 31 12 chr6 83654340 83654820 -98760422 - L1M2 LINE L1 -653 5659 5173 533 236 37 93 chr6 83654823 83655039 -98760203 + LTR68 LTR ERV1 1 204 -536 217 316 0 0 chr6 83655269 83655326 -98759916 + MIR SINE MIR 206 262 0 2892 6 0 6 chr6 83657058 83657377 -98757865 + AluYb8 SINE Alu 2 318 0 2216 131 20 0 chr6 83657947 83658297 -98756945 - L1PA15 LINE L1 -13 6152 5796 223 91 23 23 chr6 83658312 83658356 -98756886 + (TTCCC)n Simple_repeat Simple_repeat 5 48 0 273 304 71 36 chr6 83658927 83659095 -98756147 - MLT1J LTR MaLR -108 403 230 807 168 7 7 chr6 83659114 83659251 -98755991 + MER2 DNA MER2_type 1 137 -208 284 262 0 71 chr6 83659325 83659338 -98755904 + MER2 DNA MER2_type 268 280 -65 1752 177 7 3 chr6 83659338 83659637 -98755605 - AluJb SINE Alu -12 300 1 284 262 0 71 chr6 83659637 83659707 -98755535 + MER2 DNA MER2_type 280 345 0 546 269 108 23 chr6 83660189 83660449 -98754793 + MLT1L LTR MaLR 9 290 -325 478 272 118 12 chr6 83660523 83660692 -98754550 + MLT1L LTR MaLR 427 613 -2 714 318 104 21 chr6 83661789 83662173 -98753069 + LTR33 LTR ERVL 32 447 -74 185 290 129 11 chr6 83662236 83662329 -98752913 - MIR SINE MIR -85 123 20 425 322 62 16 chr6 83662593 83662835 -98752407 - L2 LINE L2 -810 2504 2252 1653 177 66 17 chr6 83663129 83663491 -98751751 + MLT1B LTR MaLR 1 380 -10 253 260 78 26 chr6 83663565 83663642 -98751600 - MLT1J LTR MaLR -85 426 346 319 279 63 0 chr6 83663718 83663829 -98751413 - MLT1J LTR MaLR -267 244 127 33 0 0 0 chr6 83664216 83664249 -98750993 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr6 83664284 83664310 -98750932 + AT_rich Low_complexity Low_complexity 1 26 0 183 42 0 0 chr6 83664340 83664364 -98750878 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 213 94 0 0 chr6 83666255 83666287 -98748955 + (CA)n Simple_repeat Simple_repeat 2 33 0 415 307 95 20 chr6 83666287 83666680 -98748562 + MLT2F LTR ERVL 2 488 -175 415 347 21 21 chr6 83666704 83666897 -98748345 + MLT2F LTR ERVL 469 661 -2 30746 81 5 6 chr6 83667334 83671412 -98743830 + L1P LINE L1 3 4076 -2070 2172 62 48 10 chr6 83671412 83671701 -98743541 + AluYa5 SINE Alu 1 300 -11 30746 81 5 6 chr6 83671701 83671824 -98743418 + L1P LINE L1 4076 4198 -1948 2155 110 3 3 chr6 83672154 83672455 -98742787 + AluSx SINE Alu 3 303 -9 378 296 50 19 chr6 83672696 83672956 -98742286 - L1ME LINE L1 -379 5742 5475 23 33 0 0 chr6 83675528 83675558 -98739684 + AT_rich Low_complexity Low_complexity 1 30 0 265 274 95 48 chr6 83675605 83675689 -98739553 - MIR SINE MIR -88 120 33 1912 182 46 0 chr6 83675988 83676335 -98738907 + MLT1A1 LTR MaLR 1 363 -2 889 311 136 25 chr6 83676389 83676565 -98738677 - L2 LINE L2 -1 3312 3157 198 71 0 0 chr6 83676565 83676593 -98738649 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 889 311 136 25 chr6 83676593 83677017 -98738225 - L2 LINE L2 -156 3157 2646 7127 59 0 2 chr6 83677117 83678465 -98736777 + L1PA5 LINE L1 4796 6154 0 2308 89 0 0 chr6 83678512 83678815 -98736427 - AluY SINE Alu -8 303 1 396 0 0 0 chr6 83678949 83678993 -98736249 + (TG)n Simple_repeat Simple_repeat 2 45 0 289 368 0 9 chr6 83679021 83679127 -98736115 - MIR SINE MIR -156 106 2 1333 321 151 33 chr6 83683131 83684437 -98730805 + L2 LINE L2 1858 3313 0 23 0 0 0 chr6 83684628 83684651 -98730591 + AT_rich Low_complexity Low_complexity 1 23 0 719 260 63 72 chr6 83684657 83684976 -98730266 - L2 LINE L2 0 3313 2998 385 241 168 14 chr6 83685128 83685348 -98729894 - L2 LINE L2 -419 2895 2642 5691 147 63 3 chr6 83685360 83686265 -98728977 - L1M1 LINE L1 -5504 2061 1103 540 167 70 0 chr6 83686259 83686373 -98728869 - L1M1 LINE L1 -7430 135 14 * 3033 209 41 4 chr6 83686650 83687335 -98727907 - MER67C LTR ERV1 0 710 1 287 221 78 39 chr6 83688614 83688691 -98726551 + Charlie8 DNA MER1_type 4 83 -2334 1471 130 57 0 chr6 83689130 83689376 -98725866 + MER2 DNA MER2_type 1 260 -85 635 204 0 15 chr6 83689572 83689704 -98725538 - FLAM_A SINE Alu 0 133 4 627 142 8 33 chr6 83690216 83690336 -98724906 + L1PA16 LINE L1 6042 6158 -8 189 0 0 0 chr6 83690928 83690949 -98724293 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2680 54 0 17 chr6 83690950 83691299 -98723943 - L1PA5 LINE L1 -18 6136 5794 940 220 149 112 chr6 83691456 83692043 -98723199 - LTR1B LTR ERV1 -4 1016 342 1155 222 51 27 chr6 83692556 83692930 -98722312 + L1MC5 LINE L1 7277 7659 -302 15615 52 1 2 chr6 83692931 83695672 -98719570 - L1PA5 LINE L1 -4 6150 3411 3838 59 2 0 chr6 83695672 83696195 -98719047 + L1PA5 LINE L1 2884 3407 -2739 836 178 49 63 chr6 83696175 83696461 -98718781 + L1MC5 LINE L1 7636 7917 -44 * 32 0 0 0 chr6 83696474 83696506 -98718736 + AT_rich Low_complexity Low_complexity 1 32 0 585 249 133 0 chr6 83697359 83697524 -98717718 - MER5A DNA MER1_type -2 187 1 28 29 0 0 chr6 83697962 83697997 -98717245 + AT_rich Low_complexity Low_complexity 1 35 0 262 174 0 0 chr6 83698688 83698734 -98716508 + FLAM_A SINE Alu 24 69 -63 27 29 0 0 chr6 83698747 83698781 -98716461 + AT_rich Low_complexity Low_complexity 1 34 0 225 239 56 42 chr6 83699426 83699497 -98715745 + MER103 DNA DNA 88 159 -7 1390 201 65 111 chr6 83699498 83700010 -98715232 - MLT1D LTR MaLR 0 505 18 2031 149 22 38 chr6 83700171 83700541 -98714701 - THE1B LTR MaLR 0 364 1 19628 90 1 1 chr6 83700971 83703612 -98711630 + L1P LINE L1 2 2644 -3502 1203 27 14 0 chr6 83703609 83703755 -98711487 + L1PA5 LINE L1 5694 5841 -313 * 270 0 0 0 chr6 83703751 83703789 -98711453 + L1PA6 LINE L1 6117 6154 0 * 254 194 15 0 chr6 83704212 83704279 -98710963 + GA-rich Low_complexity Low_complexity 3 70 0 465 283 151 5 chr6 83704300 83704505 -98710737 + MIR SINE MIR 1 235 -27 2043 147 0 0 chr6 83705032 83705331 -98709911 + AluSx SINE Alu 1 299 -13 205 388 139 0 chr6 83705473 83705602 -98709640 + L2 LINE L2 3122 3268 -4 420 179 13 0 chr6 83706858 83706936 -98708306 - MIR SINE MIR -64 144 66 449 276 164 14 chr6 83706961 83707175 -98708067 - MLT1I LTR MaLR -2 407 162 355 256 114 31 chr6 83707645 83707969 -98707273 - L1MDa LINE L1 -4512 2028 1678 228 309 88 28 chr6 83708007 83708071 -98707171 - L1MDa LINE L1 -5651 879 820 2501 77 0 0 chr6 83708071 83708382 -98706860 + AluY SINE Alu 1 311 0 228 309 88 28 chr6 83708382 83708498 -98706744 - L1MDa LINE L1 -5710 820 688 288 0 0 0 chr6 83708815 83708847 -98706395 + (TG)n Simple_repeat Simple_repeat 1 32 0 225 0 0 0 chr6 83710706 83710731 -98704511 + (A)n Simple_repeat Simple_repeat 1 25 0 2357 57 13 7 chr6 83711045 83711345 -98703897 + AluY SINE Alu 1 302 -9 25 0 0 0 chr6 83714207 83714232 -98701010 + AT_rich Low_complexity Low_complexity 1 25 0 4966 156 56 59 chr6 83714232 83716107 -98699135 - L1MA8 LINE L1 -5 6286 4394 2040 125 3 3 chr6 83716107 83716402 -98698840 + AluSg SINE Alu 1 295 -15 342 0 0 0 chr6 83716914 83716952 -98698290 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 468 160 20 0 chr6 83716956 83717056 -98698186 - L1MA7 LINE L1 -6 6285 6184 23 0 0 0 chr6 83717379 83717402 -98697840 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 83718250 83718279 -98696963 + AT_rich Low_complexity Low_complexity 1 29 0 3827 43 0 0 chr6 83718526 83718988 -98696254 + L1PA5 LINE L1 5691 6152 -2 1216 249 115 80 chr6 83719529 83720291 -98694951 + L1MC5 LINE L1 6559 7355 -606 387 0 0 0 chr6 83720291 83720334 -98694908 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1216 249 115 80 chr6 83720334 83720395 -98694847 + L1MC5 LINE L1 7355 7412 -549 504 242 123 28 chr6 83720416 83720701 -98694541 + L1MC5 LINE L1 7599 7910 -51 2490 77 3 0 chr6 83720891 83721201 -98694041 + AluY SINE Alu 1 311 0 1678 234 94 19 chr6 83723004 83723482 -98691760 + LTR40a LTR ERVL 1 514 -5 2509 42 0 42 chr6 83724287 83724599 -98690643 - AluY SINE Alu -12 299 1 275 219 6 60 chr6 83725277 83725388 -98689854 + HsTC2 DNA Tc2 3 1898 0 719 328 106 15 chr6 83725396 83725802 -98689440 + LTR33 LTR ERVL 9 451 -70 572 196 46 0 chr6 83725826 83726000 -98689242 - L1MA9 LINE L1 -22 6290 6013 324 264 78 93 chr6 83726920 83727113 -98688129 + ERVL LTR ERVL 1233 1422 -4342 1565 331 49 41 chr6 83727443 83728402 -98686840 + ERVL LTR ERVL 1799 2765 -2999 687 308 80 12 chr6 83728535 83728961 -98686281 + ERVL LTR ERVL 3040 3517 -2137 841 355 46 21 chr6 83729397 83729957 -98685285 + ERVL LTR ERVL 4250 4823 -941 1665 237 19 77 chr6 83730078 83730315 -98684927 - MLT1D LTR MaLR -12 493 301 2087 132 6 0 chr6 83730315 83730626 -98684616 - AluSq SINE Alu 0 313 1 1665 237 19 77 chr6 83730626 83730911 -98684331 - MLT1D LTR MaLR -204 301 1 1170 314 62 19 chr6 83731135 83731603 -98683639 + LTR33 LTR ERVL 34 521 0 366 298 21 44 chr6 83731953 83732264 -98682978 + L1ME LINE L1 34 623 -5907 633 311 67 42 chr6 83732610 83733377 -98681865 + L1ME LINE L1 798 1470 -4968 2863 181 62 6 chr6 83733384 83734009 -98681233 - L1MB7 LINE L1 -103 6081 5422 2095 133 0 13 chr6 83734046 83734348 -98680894 + AluSx SINE Alu 1 298 -14 215 234 0 0 chr6 83734349 83734396 -98680846 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 238 317 40 30 chr6 83734397 83734498 -98680744 + MIR SINE MIR 161 262 0 192 340 175 0 chr6 83735083 83735180 -98680062 + L2 LINE L2 3126 3239 -33 867 195 6 12 chr6 83735208 83735372 -98679870 + FRAM SINE Alu 1 162 -14 327 280 0 20 chr6 83735443 83735543 -98679699 - MIR SINE MIR -16 246 149 1901 180 23 17 chr6 83735658 83736008 -98679234 - MLT1A1 LTR MaLR -4 361 10 300 186 0 17 chr6 83736709 83736768 -98678474 + MLT1I LTR MaLR 352 409 0 342 183 219 43 chr6 83736914 83737078 -98678164 + L1MC5 LINE L1 7724 7916 -45 412 328 52 6 chr6 83737556 83737730 -98677512 + MIR SINE MIR 51 232 -30 1310 132 45 12 chr6 83738507 83738749 -98676493 + LTR1 LTR ERV1 1 250 -535 555 175 141 97 chr6 83738785 83738991 -98676251 + LTR1 LTR ERV1 203 417 -368 2141 117 9 23 chr6 83739091 83739433 -98675809 + LTR1 LTR ERV1 447 783 -2 350 272 45 0 chr6 83739680 83739815 -98675427 + L1MC/D LINE L1 5693 5833 -301 1650 191 33 55 chr6 83739878 83740298 -98674944 - L1MA10 LINE L1 -15 6319 5909 3097 207 45 39 chr6 83740305 83741120 -98674122 + LTR1B LTR ERV1 7 826 0 2728 185 51 6 chr6 83741121 83741666 -98673576 - L1MA10 LINE L1 -278 5911 5342 481 118 79 0 chr6 83741758 83741834 -98673408 - AluSg/x SINE Alu -15 294 213 848 108 0 0 chr6 83741834 83741945 -98673297 - AluSc SINE Alu -52 257 147 602 150 17 50 chr6 83741947 83742067 -98673175 + MLT2B2 LTR ERVL 400 515 0 582 338 9 14 chr6 83742497 83742713 -98672529 + L1MC/D LINE L1 5563 5777 -2031 2784 63 0 0 chr6 83742861 83743210 -98672032 - L1PA6 LINE L1 -81 6073 5725 198 231 0 0 chr6 83743210 83743275 -98671967 + CT-rich Low_complexity Low_complexity 3 67 0 213 178 0 0 chr6 83743298 83743343 -98671899 + CT-rich Low_complexity Low_complexity 1 45 0 489 223 0 29 chr6 83743359 83743462 -98671780 - MER58 DNA MER1_type -115 100 1 994 293 39 3 chr6 83743463 83743770 -98671472 + HERVL LTR ERVL 2872 3189 -2465 772 284 19 9 chr6 83743859 83744070 -98671172 + HERVL LTR ERVL 3689 3901 -1863 2145 200 15 5 chr6 83744390 83744795 -98670447 + MSTB LTR MaLR 3 411 -15 822 283 82 55 chr6 83745003 83745565 -98669677 - MER77 LTR ERV1 -7 598 22 335 291 148 36 chr6 83745665 83745888 -98669354 + MIR SINE MIR 5 252 -10 885 300 36 72 chr6 83746094 83746455 -98668787 - LTR16A LTR ERVL -5 445 73 816 256 6 0 chr6 83746455 83746631 -98668611 + MER45A DNA AcHobo 1 177 -1 885 300 36 72 chr6 83746631 83746670 -98668572 - LTR16A LTR ERVL -377 73 60 2589 145 65 13 chr6 83746670 83747131 -98668111 - MER31A LTR ERV1 0 485 1 885 300 36 72 chr6 83747131 83747175 -98668067 - LTR16A LTR ERVL -390 60 16 1441 199 24 40 chr6 83747286 83747583 -98667659 + AluJo SINE Alu 1 292 -10 297 0 0 0 chr6 83747994 83748027 -98667215 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1639 182 3 23 chr6 83748443 83748745 -98666497 - AluJb SINE Alu -15 297 2 187 256 0 0 chr6 83748897 83748936 -98666306 + L2 LINE L2 3016 3054 -218 667 269 97 48 chr6 83749068 83749295 -98665947 + MIR SINE MIR 2 239 -23 376 336 41 7 chr6 83749343 83749489 -98665753 - MIR SINE MIR -48 214 64 181 333 0 0 chr6 83749507 83749561 -98665681 + L2 LINE L2 2704 2757 -557 342 300 0 17 chr6 83750084 83750204 -98665038 - MER94 DNA DNA -5 129 12 202 175 0 123 chr6 83750601 83750658 -98664584 + L2 LINE L2 3264 3313 0 340 290 89 101 chr6 83750828 83751242 -98664000 + MLT1I LTR MaLR 1 409 0 188 420 14 21 chr6 83751408 83751551 -98663691 - MIR3 SINE MIR -23 185 44 206 31 0 31 chr6 83752271 83752303 -98662939 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 22 0 0 0 chr6 83752492 83752514 -98662728 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 83753541 83753569 -98661673 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 83754632 83754660 -98660582 + AT_rich Low_complexity Low_complexity 1 28 0 479 303 95 66 chr6 83754672 83754913 -98660329 - L2 LINE L2 -2916 398 151 418 220 183 11 chr6 83755124 83755315 -98659927 - L1ME4a LINE L1 -167 5954 5731 781 217 18 75 chr6 83756123 83756349 -98658893 + MER20 DNA MER1_type 4 216 -3 1916 122 42 75 chr6 83757434 83757818 -98657424 + THE1C LTR MaLR 1 371 -4 1891 156 3 0 chr6 83758058 83758340 -98656902 + AluSx SINE Alu 3 285 -27 26 30 0 0 chr6 83758480 83758513 -98656729 + AT_rich Low_complexity Low_complexity 1 33 0 3324 174 59 13 chr6 83758614 83759293 -98655949 + MER67C LTR ERV1 1 710 0 22 0 0 0 chr6 83759488 83759510 -98655732 + AT_rich Low_complexity Low_complexity 1 22 0 3772 137 29 29 chr6 83759576 83760226 -98655016 + MER39B LTR ERV1 4 653 0 3826 193 30 13 chr6 83760253 83760581 -98654661 - L1MB4 LINE L1 -69 6111 5790 2004 132 7 0 chr6 83760581 83760870 -98654372 - AluSg SINE Alu -19 291 1 3826 193 30 13 chr6 83760870 83761411 -98653831 - L1MB4 LINE L1 -390 5790 5228 302 0 26 0 chr6 83761725 83761763 -98653479 + (CA)n Simple_repeat Simple_repeat 2 40 0 491 178 85 0 chr6 83761847 83761976 -98653266 - L1MC4a LINE L1 -1978 5830 5691 400 326 7 0 chr6 83761988 83762129 -98653113 - L1MC4a LINE L1 -2193 5615 5474 381 261 161 37 chr6 83762207 83762425 -98652817 - MIR SINE MIR 0 262 18 1083 257 59 71 chr6 83762523 83763032 -98652210 - MLT1D LTR MaLR 0 505 3 675 295 14 41 chr6 83763087 83763382 -98651860 - L2 LINE L2 0 3313 3027 1393 230 122 28 chr6 83763382 83763843 -98651399 + MLT1D LTR MaLR 1 504 -1 587 273 71 85 chr6 83763843 83764263 -98650979 - L2 LINE L2 -281 3032 2618 274 243 40 14 chr6 83764266 83764340 -98650902 - L2 LINE L2 -1009 2305 2230 290 376 21 21 chr6 83765823 83765964 -98649278 - MIR3 SINE MIR -64 144 4 197 180 20 0 chr6 83766721 83766771 -98648471 + GA-rich Low_complexity Low_complexity 2 52 0 203 190 17 0 chr6 83766811 83766869 -98648373 + (TA)n Simple_repeat Simple_repeat 1 59 0 1004 316 55 121 chr6 83767018 83767373 -98647869 + MLT1E1 LTR MaLR 1 289 -365 2284 91 0 29 chr6 83767373 83767681 -98647561 + AluSp SINE Alu 2 300 -13 1004 316 55 121 chr6 83767681 83768022 -98647220 + MLT1E1 LTR MaLR 289 651 -3 236 344 39 52 chr6 83768487 83768561 -98646681 - L2 LINE L2 -13 3259 3186 1584 88 4 22 chr6 83768561 83768788 -98646454 - AluSq SINE Alu 0 313 91 236 344 39 52 chr6 83768788 83768867 -98646375 - L2 LINE L2 -86 3186 3108 555 306 6 13 chr6 83770628 83770785 -98644457 + MER5B DNA MER1_type 20 175 -3 2471 286 139 39 chr6 83771237 83772754 -98642488 + L2 LINE L2 1641 3308 -5 21 36 0 0 chr6 83773098 83773126 -98642116 + AT_rich Low_complexity Low_complexity 1 28 0 407 286 29 116 chr6 83776449 83776760 -98638482 - L2 LINE L2 0 3313 3030 352 342 37 16 chr6 83776914 83777209 -98638033 - L2 LINE L2 -244 3069 2773 498 146 18 18 chr6 83777220 83777330 -98637912 - L1MA9 LINE L1 -33 6279 6170 1049 296 132 28 chr6 83777333 83777911 -98637331 - L2 LINE L2 -609 2705 2068 203 368 66 0 chr6 83777906 83778042 -98637200 - L2 LINE L2 -193 3079 2935 * 1934 160 0 0 chr6 83778842 83779130 -98636112 - AluJb SINE Alu -24 288 1 2191 136 50 19 chr6 83780583 83781001 -98634241 - L1MB1 LINE L1 0 6168 5738 291 125 31 31 chr6 83781047 83781111 -98634131 - MER116 DNA Mariner -11 69 6 417 273 119 14 chr6 83781248 83781391 -98633851 + MER5B DNA MER1_type 1 158 -20 1021 207 71 124 chr6 83782121 83782858 -98632384 - LTR8A LTR ERV1 0 727 1 5131 213 26 13 chr6 83783011 83784279 -98630963 + L1M3 LINE L1 3323 4606 -1540 268 226 16 0 chr6 83784541 83784603 -98630639 + L1M3 LINE L1 5664 5726 -445 3638 73 4 0 chr6 83784550 83785030 -98630212 + L1PA7 LINE L1 5673 6154 0 1910 148 7 3 chr6 83786019 83786322 -98628920 - AluJb SINE Alu -8 304 1 1012 323 83 36 chr6 83786697 83787356 -98627886 + HAL1 LINE L1 1 690 -1817 554 285 0 0 chr6 83787393 83787551 -98627691 + MER105 DNA DNA 5 162 -42 347 122 0 0 chr6 83787724 83787773 -98627469 - LTR1B LTR ERV1 -716 110 62 1995 262 159 33 chr6 83787878 83789120 -98626122 + HAL1 LINE L1 995 2392 -115 232 424 98 25 chr6 83789127 83789493 -98625749 + L2 LINE L2 2874 3266 -6 27 49 0 0 chr6 83789558 83789599 -98625643 + AT_rich Low_complexity Low_complexity 1 41 0 1023 189 5 20 chr6 83789719 83789920 -98625322 + L1PB1 LINE L1 3 200 -6663 * 10086 108 50 5 chr6 83789904 83792075 -98623167 + L1PB1 LINE L1 625 3003 -3859 849 89 65 0 chr6 83792075 83792199 -98623043 + AluSc SINE Alu 1 132 -177 391 123 18 0 chr6 83792224 83792281 -98622961 + AluSp SINE Alu 115 172 -131 1100 151 6 11 chr6 83792290 83792469 -98622773 + AluSc SINE Alu 114 291 -18 9516 213 23 11 chr6 83792469 83792584 -98622658 + L1PB1 LINE L1 2996 3108 -3754 2277 101 0 0 chr6 83792584 83792881 -98622361 + AluY SINE Alu 1 297 -14 9516 213 23 11 chr6 83792881 83795013 -98620229 + L1PB1 LINE L1 3108 5270 -1592 301 215 182 50 chr6 83795123 83795244 -98619998 - LTR1B LTR ERV1 -689 137 1 2008 124 0 30 chr6 83795376 83795675 -98619567 - AluSx SINE Alu -22 290 1 2852 175 5 4 chr6 83796704 83797257 -98617985 - L1 LINE L1 -1512 4634 4081 415 277 184 45 chr6 83797323 83797735 -98617507 + HAL1b LINE L1 120 473 -875 1861 243 79 4 chr6 83797735 83798205 -98617037 - MLT1D LTR MaLR 0 505 1 415 277 184 45 chr6 83798205 83798569 -98616673 + HAL1b LINE L1 473 1004 -344 5338 137 7 3 chr6 83798811 83799881 -98615361 - L1PA16 LINE L1 -7 6159 5090 5451 91 34 17 chr6 83799892 83800696 -98614546 - L1PA10 LINE L1 0 6168 5352 5863 153 26 4 chr6 83800865 83801980 -98613262 + L1PB1 LINE L1 5361 6515 -352 231 88 0 0 chr6 83801980 83802014 -98613228 + (CA)n Simple_repeat Simple_repeat 2 35 0 5863 153 26 4 chr6 83802014 83802375 -98612867 + L1PB1 LINE L1 6515 6867 0 229 335 44 13 chr6 83802825 83802983 -98612259 - L2 LINE L2 -1261 2053 1891 270 308 110 21 chr6 83803464 83803892 -98611350 + L1 LINE L1 4370 4835 -1311 25 65 0 0 chr6 83804056 83804102 -98611140 + AT_rich Low_complexity Low_complexity 1 46 0 1221 304 65 19 chr6 83804289 83804874 -98610368 + L1MC4a LINE L1 5269 5880 -1928 316 302 60 27 chr6 83805249 83805398 -98609844 + L1 LINE L1 4824 4977 -1169 286 316 156 13 chr6 83806232 83806457 -98608785 + MIR SINE MIR 3 259 -3 1182 183 0 9 chr6 83807314 83807527 -98607715 + MSTA LTR MaLR 8 218 -210 363 182 0 0 chr6 83807522 83807588 -98607654 + MSTA LTR MaLR 363 428 0 * 2062 148 120 8 chr6 83807956 83808340 -98606902 + MSTA LTR MaLR 1 427 -1 8372 181 41 5 chr6 83808341 83809934 -98605308 + MSTA-int LTR MaLR 1 1651 0 2198 127 138 5 chr6 83809934 83810312 -98604930 + MSTA LTR MaLR 1 428 0 2780 168 137 102 chr6 83810592 83811136 -98604106 - L1MC3 LINE L1 -27 7758 7086 347 238 12 12 chr6 83811136 83811220 -98604022 - MLT1F1 LTR MaLR -442 125 42 2780 168 137 102 chr6 83811220 83811528 -98603714 - L1MC3 LINE L1 -699 7086 6790 6902 57 13 15 chr6 83812121 83813401 -98601841 - L1PA7 LINE L1 -1 6153 4873 486 127 0 51 chr6 83813401 83813480 -98601762 + L1P3 LINE L1 1052 1126 -5335 851 158 8 0 chr6 83813506 83813633 -98601609 - FLAM_C SINE Alu -15 128 1 278 302 117 34 chr6 83813735 83813940 -98601302 - L2 LINE L2 -14 3299 3078 1152 281 175 29 chr6 83813952 83814666 -98600576 - L2 LINE L2 -164 3149 2327 1783 175 27 72 chr6 83814667 83815112 -98600130 - MSTB1 LTR MaLR -7 425 1 356 227 91 0 chr6 83815112 83815200 -98600042 - L2 LINE L2 -983 2331 2236 5664 141 17 7 chr6 83815200 83816163 -98599079 - L1MA4 LINE L1 0 6300 5329 208 139 0 0 chr6 83816163 83816199 -98599043 - L2 LINE L2 -1065 2249 2214 1465 300 107 19 chr6 83816247 83816890 -98598352 - ERVL LTR ERVL -1172 4592 3893 1016 353 34 5 chr6 83817200 83817617 -98597625 - ERVL LTR ERVL -2239 3525 3097 2315 251 47 27 chr6 83817847 83818513 -98596729 - L1M4b LINE L1 -5563 1296 618 241 269 93 19 chr6 83818499 83818607 -98596635 - L1M4b LINE L1 -6730 129 14 * 2070 239 58 15 chr6 83818635 83819578 -98595664 - L1MB7 LINE L1 -5 6666 5615 414 0 0 0 chr6 83819578 83819624 -98595618 + (TA)n Simple_repeat Simple_repeat 2 47 0 2070 239 58 15 chr6 83819624 83819766 -98595476 - L1MB7 LINE L1 -1056 5615 5481 2833 238 31 78 chr6 83819800 83820730 -98594512 - L1MB7 LINE L1 -5640 902 17 22 70 0 0 chr6 83820984 83821027 -98594215 + AT_rich Low_complexity Low_complexity 1 43 0 300 344 46 20 chr6 83822574 83822769 -98592473 - HAL1b LINE L1 -759 589 390 22 0 0 0 chr6 83822906 83822928 -98592314 + AT_rich Low_complexity Low_complexity 1 22 0 212 0 36 0 chr6 83823801 83823829 -98591413 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2209 191 49 7 chr6 83824059 83824509 -98590733 - MER70A LTR ERVL 0 472 4 2206 195 5 10 chr6 83824518 83824923 -98590319 - MER70A-int LTR ERVL 0 5023 4621 9539 122 15 123 chr6 83825045 83826546 -98588696 - L1P LINE L1 -877 5269 3607 2146 134 3 0 chr6 83826546 83826853 -98588389 - AluSx SINE Alu -1 311 4 9539 122 15 123 chr6 83826853 83826869 -98588373 - L1P LINE L1 -2539 3607 3591 4368 66 2 0 chr6 83826869 83827426 -98587816 - L1PA7 LINE L1 -1 6153 5596 9539 122 15 123 chr6 83827426 83827987 -98587255 - L1P LINE L1 -2555 3591 3415 10255 175 20 32 chr6 83828098 83829957 -98585285 - MER70A-int LTR ERVL -1565 3458 1621 1634 137 134 0 chr6 83829951 83830243 -98584999 - MER70A-int LTR ERVL -3826 1197 867 * 2773 150 71 8 chr6 83830243 83830732 -98584510 - LTR64 LTR ERVK 0 558 33 2945 97 10 76 chr6 83830732 83831217 -98584025 + MLT2A2 LTR ERVL 1 453 0 2773 150 71 8 chr6 83831217 83831246 -98583996 - LTR64 LTR ERVK -525 33 7 252 105 0 0 chr6 83831246 83831284 -98583958 - L1MA3 LINE L1 -14 6291 6254 3710 168 100 57 chr6 83831311 83832139 -98583103 - MER70A-int LTR ERVL -4159 864 1 2241 217 30 4 chr6 83832139 83832599 -98582643 - MER70A LTR ERVL 0 472 1 272 349 64 44 chr6 83835493 83835928 -98579314 + MLT1K LTR MaLR 140 583 -5 34 0 0 0 chr6 83837212 83837246 -98577996 + AT_rich Low_complexity Low_complexity 1 34 0 569 172 76 97 chr6 83837919 83838064 -98577178 - MSTA LTR MaLR -310 147 1 329 169 28 14 chr6 83838662 83838733 -98576509 - HAL1 LINE L1 -590 1917 1846 2082 141 32 16 chr6 83838734 83839103 -98576139 + THE1C LTR MaLR 1 375 0 3316 77 5 7 chr6 83839114 83839554 -98575688 + THE1C-int LTR MaLR 1142 1580 0 2328 124 13 24 chr6 83839554 83839933 -98575309 + THE1C LTR MaLR 1 375 0 4108 180 63 19 chr6 83840153 83840929 -98574313 + MER21B LTR ERV1 3 812 -51 2027 168 58 15 chr6 83840945 83841324 -98573918 + MSTD LTR MaLR 11 396 0 538 275 79 0 chr6 83841324 83841502 -98573740 - HAL1 LINE L1 -883 1624 1433 1021 271 105 21 chr6 83841512 83841837 -98573405 + MER45C DNA AcHobo 1 352 -601 1221 273 105 19 chr6 83841866 83842277 -98572965 + MER45C DNA AcHobo 503 948 -5 4888 133 14 0 chr6 83842720 83843509 -98571733 - L1MA3 LINE L1 0 6305 5506 19985 185 28 13 chr6 83843511 83846247 -98568995 - L1 LINE L1 -2334 5231 2381 1881 132 11 7 chr6 83846247 83846570 -98568672 - AluSx SINE Alu 0 324 1 19985 185 28 13 chr6 83846570 83848975 -98566267 - L1 LINE L1 -5184 2381 12 311 264 73 81 chr6 83849086 83849359 -98565883 - HAL1 LINE L1 -1575 932 662 249 119 0 0 chr6 83849521 83849563 -98565679 + (TAA)n Simple_repeat Simple_repeat 3 44 0 758 61 0 0 chr6 83850106 83850204 -98565038 + L1PA3 LINE L1 1 98 -6048 * 36185 42 26 2 chr6 83850198 83855589 -98559653 + L1PA3 LINE L1 617 6124 -31 284 25 50 0 chr6 83855589 83855629 -98559613 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 36185 42 26 2 chr6 83855629 83855662 -98559580 + L1PA3 LINE L1 6124 6155 0 6628 76 33 49 chr6 83855735 83857592 -98557650 - SVA Other Other -551 1386 17 942 135 0 0 chr6 83857716 83857849 -98557393 - AluSq/x SINE Alu -179 133 1 804 215 19 0 chr6 83858010 83858168 -98557074 - MER58B DNA MER1_type -1 340 180 3514 183 48 15 chr6 83858335 83859135 -98556107 + LTR1B LTR ERV1 1 826 0 25415 120 95 61 chr6 83859529 83865459 -98549783 + L1PA7 LINE L1 12 6152 -2 1423 328 128 24 chr6 83865645 83866978 -98548264 + L2 LINE L2 1767 3237 -76 191 347 0 13 chr6 83867088 83867163 -98548079 - L2 LINE L2 -5 3308 3235 548 264 97 35 chr6 83867432 83867659 -98547583 + MLT1F LTR MaLR 302 542 0 207 100 0 0 chr6 83867852 83867882 -98547360 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 236 333 59 0 chr6 83867893 83867995 -98547247 - L2 LINE L2 -2 3311 3204 330 228 11 54 chr6 83869763 83869855 -98545387 - L2 LINE L2 -32 3281 3194 1467 201 69 59 chr6 83870583 83870975 -98544267 - MSTD LTR MaLR 0 396 1 305 385 39 43 chr6 83871478 83871686 -98543556 + L2 LINE L2 3065 3271 -1 250 250 0 0 chr6 83872660 83872712 -98542530 + MIR SINE MIR 41 92 -170 218 189 151 0 chr6 83872751 83872804 -98542438 + MIR SINE MIR 192 252 -10 828 261 50 4 chr6 83872891 83873132 -98542110 + MER46C DNA MER2_type 73 324 -14 27 49 0 0 chr6 83873536 83873577 -98541665 + AT_rich Low_complexity Low_complexity 1 41 0 226 250 153 28 chr6 83874211 83874355 -98540887 - L2 LINE L2 -120 3193 3032 313 302 70 16 chr6 83874372 83874501 -98540741 - L2 LINE L2 -431 2883 2748 629 264 28 33 chr6 83874541 83874723 -98540519 - MER20 DNA MER1_type -21 198 18 299 258 97 16 chr6 83874822 83874946 -98540296 + MLT1L LTR MaLR 368 501 -114 249 353 0 0 chr6 83875212 83875297 -98539945 + L2 LINE L2 1716 1800 -1514 287 254 105 72 chr6 83875382 83875812 -98539430 + L1ME3A LINE L1 4903 5346 -800 332 304 65 59 chr6 83875855 83876210 -98539032 + L1ME3A LINE L1 5389 5745 -417 557 240 14 101 chr6 83876276 83876484 -98538758 - L1ME LINE L1 -447 5723 5534 400 230 102 91 chr6 83876478 83876752 -98538490 + L1ME3A LINE L1 5718 5994 -170 * 707 272 60 10 chr6 83877094 83877312 -98537930 + MIR SINE MIR 8 233 -29 302 306 81 38 chr6 83878236 83878445 -98536797 - L2 LINE L2 -18 3295 3078 438 183 22 70 chr6 83879320 83879640 -98535602 + (TA)n Simple_repeat Simple_repeat 1 304 0 598 289 16 11 chr6 83879880 83880067 -98535175 - MIR SINE MIR -74 188 1 400 338 113 24 chr6 83880795 83881168 -98534074 + L1MEd LINE L1 688 1093 -5026 293 310 60 33 chr6 83881178 83881658 -98533584 + L1MEd LINE L1 1147 1639 -4671 31 102 0 0 chr6 83881765 83881873 -98533369 + AT_rich Low_complexity Low_complexity 1 108 0 385 288 30 59 chr6 83882195 83882431 -98532811 + L1MEd LINE L1 2203 2431 -3698 514 284 98 22 chr6 83882532 83883216 -98532026 + L1MEd LINE L1 2473 3208 -2921 373 236 63 0 chr6 83883272 83883399 -98531843 + L1MEd LINE L1 3195 3329 -2800 * 4613 181 22 31 chr6 83883397 83884958 -98530284 + L1PB4 LINE L1 4285 5826 -330 4037 155 6 6 chr6 83884959 83885663 -98529579 + L1PA11 LINE L1 3285 3988 -2158 3677 107 50 37 chr6 83885663 83886634 -98528608 + MER11A LTR ERVK 3 1071 0 7551 152 2 19 chr6 83886635 83886926 -98528316 + L1PA11 LINE L1 3982 4276 -1870 1758 176 31 0 chr6 83886926 83887216 -98528026 - AluSx SINE Alu -11 301 3 7551 152 2 19 chr6 83887216 83888268 -98526974 + L1PA11 LINE L1 4276 5303 -843 4390 95 7 3 chr6 83888269 83888889 -98526353 + L1PA11 LINE L1 5553 6174 0 1816 159 8 37 chr6 83888889 83889238 -98526004 + L1PB4 LINE L1 5814 6156 0 24 0 0 0 chr6 83889238 83889262 -98525980 + AT_rich Low_complexity Low_complexity 1 24 0 342 277 190 24 chr6 83889313 83889566 -98525676 - L1PB4 LINE L1 -239 5925 5631 * 955 244 18 4 chr6 83889559 83889784 -98525458 + L1PB4 LINE L1 5925 6152 -4 1106 260 71 73 chr6 83889882 83891002 -98524240 + L1ME3A LINE L1 4832 5951 -219 7317 174 161 14 chr6 83891178 83892708 -98522534 - MER52A LTR ERV1 0 1755 1 28 29 0 0 chr6 83893885 83893920 -98521322 + AT_rich Low_complexity Low_complexity 1 35 0 200 143 26 26 chr6 83895831 83895908 -98519334 + (TA)n Simple_repeat Simple_repeat 2 78 0 21 89 0 0 chr6 83895961 83896017 -98519225 + AT_rich Low_complexity Low_complexity 1 56 0 1186 189 76 121 chr6 83896230 83896717 -98518525 + MER4C LTR ERV1 1 465 0 267 348 27 36 chr6 83896897 83897009 -98518233 - L2 LINE L2 -2901 413 303 184 279 66 57 chr6 83897528 83897650 -98517592 - MER5A DNA MER1_type 0 189 67 28 61 0 0 chr6 83898326 83898375 -98516867 + AT_rich Low_complexity Low_complexity 1 49 0 1983 136 3 0 chr6 83898383 83898678 -98516564 + AluSc SINE Alu 1 296 -13 429 250 151 16 chr6 83898763 83898955 -98516287 - LTR33 LTR ERVL -2 519 302 292 291 32 63 chr6 83898982 83899140 -98516102 - LTR33 LTR ERVL -307 214 62 229 324 29 0 chr6 83899287 83899392 -98515850 - L1ME2 LINE L1 -2267 5541 5434 326 309 0 0 chr6 83899404 83899498 -98515744 - L1MC4 LINE L1 -1339 6703 6610 2965 213 19 12 chr6 83899498 83900187 -98515055 - L1MB5 LINE L1 -15 6159 5466 3984 160 19 4 chr6 83900187 83900912 -98514330 + L1MA6 LINE L1 5558 6300 0 254 194 0 48 chr6 83901674 83901736 -98513506 + A-rich Low_complexity Low_complexity 5 63 0 23 33 0 0 chr6 83902532 83902562 -98512680 + AT_rich Low_complexity Low_complexity 1 30 0 189 363 99 11 chr6 83904730 83904821 -98510421 - L2 LINE L2 -23 3249 3151 26 0 0 0 chr6 83905930 83905956 -98509286 + AT_rich Low_complexity Low_complexity 1 26 0 3934 153 5 1 chr6 83905996 83906662 -98508580 - L1PB4 LINE L1 -2 6154 5487 551 247 64 56 chr6 83907357 83907730 -98507512 + L1MC5 LINE L1 7538 7913 -48 300 271 54 0 chr6 83907748 83907877 -98507365 - L1ME4a LINE L1 -4 6117 5982 21 71 0 0 chr6 83907901 83907943 -98507299 + AT_rich Low_complexity Low_complexity 1 42 0 185 320 0 40 chr6 83908609 83908659 -98506583 + L2 LINE L2 3139 3186 -86 25 0 0 0 chr6 83909073 83909098 -98506144 + AT_rich Low_complexity Low_complexity 1 25 0 1580 100 45 0 chr6 83909868 83910088 -98505154 - MER30 DNA MER1_type 0 230 1 21 36 0 0 chr6 83910574 83910602 -98504640 + AT_rich Low_complexity Low_complexity 1 28 0 226 430 62 0 chr6 83910602 83910730 -98504512 - MER91A DNA MER1_type -55 141 6 231 234 138 0 chr6 83913588 83913682 -98501560 + L1ME4a LINE L1 5979 6085 -36 309 328 70 13 chr6 83913875 83914177 -98501065 + L1ME LINE L1 5364 5682 -439 27 73 0 0 chr6 83914241 83914296 -98500946 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr6 83915049 83915071 -98500171 + AT_rich Low_complexity Low_complexity 1 22 0 523 356 36 5 chr6 83915074 83915296 -98499946 - MIR SINE MIR -33 229 1 8034 241 71 37 chr6 83915324 83916133 -98499109 + L1MDa LINE L1 14 794 -5746 381 22 0 0 chr6 83916133 83916179 -98499063 + (TC)n Simple_repeat Simple_repeat 1 46 0 8034 241 71 37 chr6 83916179 83917960 -98497282 + L1MDa LINE L1 794 2710 -3830 1937 159 0 0 chr6 83917960 83918255 -98496987 + AluSx SINE Alu 3 297 -15 8034 241 71 37 chr6 83918255 83918542 -98496700 + L1MDa LINE L1 2710 2986 -3554 356 138 32 75 chr6 83918566 83918754 -98496488 + (TA)n Simple_repeat Simple_repeat 1 180 0 4253 240 47 46 chr6 83918763 83920574 -98494668 + L1MDa LINE L1 3008 4820 -1720 6151 101 4 0 chr6 83920621 83921617 -98493625 - L1PA14 LINE L1 0 6161 5158 1127 218 29 7 chr6 83921617 83921924 -98493318 + L1P LINE L1 2973 3286 -2860 337 318 88 18 chr6 83921925 83922142 -98493100 - L1M4 LINE L1 -2666 3978 3747 21 36 0 0 chr6 83922367 83922395 -98492847 + AT_rich Low_complexity Low_complexity 1 28 0 331 259 28 42 chr6 83922486 83922698 -98492544 - L1MEc LINE L1 -5307 1235 1027 410 339 27 9 chr6 83923143 83923364 -98491878 - L1MEc LINE L1 -6090 735 511 30 45 0 0 chr6 83923412 83923456 -98491786 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr6 83923596 83923624 -98491618 + AT_rich Low_complexity Low_complexity 1 28 0 378 213 213 51 chr6 83923665 83923862 -98491380 - LTR41 LTR ERVL -1 772 544 9438 55 99 8 chr6 83924307 83925623 -98489619 - L1P LINE L1 -4711 1435 1 505 279 32 7 chr6 83925652 83925806 -98489436 - LTR41 LTR ERVL -610 163 6 22 56 0 0 chr6 83926488 83926524 -98488718 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr6 83927236 83927266 -98487976 + (TG)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr6 83927265 83927287 -98487955 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 311 332 75 20 chr6 83928059 83928258 -98486984 - MIR SINE MIR -47 215 6 2321 97 3 0 chr6 83928581 83928892 -98486350 - AluSp SINE Alu -1 312 1 183 205 0 0 chr6 83929027 83929066 -98486176 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 513 338 73 15 chr6 83929595 83929923 -98485319 - L3 LINE CR1 -3 1574 1228 260 380 43 0 chr6 83929915 83930007 -98485235 - L2 LINE L2 -6 3266 3171 * 248 312 65 0 chr6 83930405 83930498 -98484744 - L3 LINE CR1 -350 1227 1129 286 294 49 20 chr6 83930758 83930860 -98484382 - L3 LINE CR1 -488 1089 985 184 387 0 13 chr6 83930991 83931066 -98484176 + MIR SINE MIR 20 93 -115 391 292 36 29 chr6 83932410 83932547 -98482695 - L2 LINE L2 -4 3309 3172 583 306 23 70 chr6 83933308 83933517 -98481725 + L1MEd LINE L1 506 723 -5396 2041 92 71 0 chr6 83933517 83933799 -98481443 + AluSp SINE Alu 1 302 -11 583 306 23 70 chr6 83933799 83934105 -98481137 + L1MEd LINE L1 723 997 -5122 341 411 57 19 chr6 83935778 83936094 -98479148 + L3 LINE CR1 1215 1542 -35 29 0 0 0 chr6 83936145 83936174 -98479068 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 83936370 83936398 -98478844 + AT_rich Low_complexity Low_complexity 1 28 0 2340 159 51 7 chr6 83937113 83937527 -98477715 - MSTB1 LTR MaLR 0 432 1 22 0 0 0 chr6 83937972 83937994 -98477248 + AT_rich Low_complexity Low_complexity 1 22 0 245 333 10 10 chr6 83938695 83938799 -98476443 - MLT1L LTR MaLR -181 434 250 202 324 126 9 chr6 83939212 83939323 -98475919 + L2 LINE L2 3190 3313 0 7624 16 0 0 chr6 83939635 83940508 -98474734 + L1PA3 LINE L1 5280 6152 -3 490 342 79 18 chr6 83941448 83941676 -98473566 - MIR SINE MIR 0 262 21 2212 127 13 24 chr6 83941819 83942196 -98473046 - THE1C LTR MaLR 0 375 3 9236 126 38 41 chr6 83942198 83943783 -98471459 - THE1C-int LTR MaLR 0 1580 1 1895 120 91 20 chr6 83943783 83944133 -98471109 - THE1C LTR MaLR 0 375 1 1935 145 119 10 chr6 83944168 83944554 -98470688 + MSTA LTR MaLR 1 428 0 599 305 18 73 chr6 83946120 83946448 -98468794 - MLT1J LTR MaLR -46 465 156 201 344 78 0 chr6 83946907 83947035 -98468207 + L2 LINE L2 3175 3312 -1 2262 112 11 41 chr6 83947169 83947535 -98467707 - THE1A LTR MaLR 0 355 1 985 256 96 25 chr6 83947606 83947930 -98467312 + MLT1A1 LTR MaLR 19 365 0 198 208 0 0 chr6 83948038 83948091 -98467151 + GA-rich Low_complexity Low_complexity 1 53 0 41713 39 23 2 chr6 83948728 83954777 -98460465 - L1PA3 LINE L1 0 6155 1 337 277 95 36 chr6 83954781 83954918 -98460324 - L1MC4 LINE L1 -456 7586 7442 223 146 36 0 chr6 83954920 83954975 -98460267 + (TA)n Simple_repeat Simple_repeat 2 58 0 323 366 44 26 chr6 83955211 83955438 -98459804 - L2 LINE L2 -575 2739 2509 8749 230 52 42 chr6 83955883 83959456 -98455786 + L1MB3 LINE L1 19 3552 -2867 2449 61 0 0 chr6 83959456 83959751 -98455491 - AluY SINE Alu -16 295 1 8749 230 52 42 chr6 83959751 83960820 -98454422 + L1MB3 LINE L1 3552 4608 -1811 1210 206 134 38 chr6 83960820 83960872 -98454370 + MSTB2 LTR MaLR 1 47 -410 1526 180 9 25 chr6 83960872 83961188 -98454054 - AluJb SINE Alu -1 311 1 1210 206 134 38 chr6 83961188 83961552 -98453690 + MSTB2 LTR MaLR 47 457 0 8749 230 52 42 chr6 83961552 83962779 -98452463 + L1MB3 LINE L1 4608 6029 -390 185 62 0 31 chr6 83962977 83963009 -98452233 + (TA)n Simple_repeat Simple_repeat 1 31 0 1978 153 19 19 chr6 83963011 83963390 -98451852 + L1MB3 LINE L1 6033 6411 -8 673 296 61 9 chr6 83963399 83963612 -98451630 + MIR SINE MIR 20 243 -19 599 334 15 23 chr6 83964366 83964647 -98450595 + MLT1I LTR MaLR 94 338 -71 459 230 36 42 chr6 83964667 83964832 -98450410 - MER112 DNA MER1_type -83 177 14 326 304 43 22 chr6 83965157 83965295 -98449947 + L3 LINE CR1 1436 1576 -1 245 390 22 15 chr6 83965916 83966052 -98449190 - L2 LINE L2 -15 3257 3121 236 278 196 10 chr6 83966573 83966670 -98448572 + L2 LINE L2 3198 3312 -1 252 136 0 0 chr6 83967139 83967183 -98448059 - MADE1 DNA Mariner -36 44 1 24 0 0 0 chr6 83967581 83967605 -98447637 + AT_rich Low_complexity Low_complexity 1 24 0 2313 62 0 3 chr6 83968123 83968413 -98446829 - AluY SINE Alu -9 302 14 22 0 0 0 chr6 83968502 83968524 -98446718 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr6 83968805 83968852 -98446390 + AT_rich Low_complexity Low_complexity 1 47 0 464 325 104 51 chr6 83968852 83969602 -98445640 + L1M4 LINE L1 3166 3955 -2191 205 197 30 0 chr6 83969675 83969741 -98445501 + (TA)n Simple_repeat Simple_repeat 1 68 0 294 272 118 40 chr6 83969741 83970215 -98445027 + L1M4 LINE L1 4326 4836 -1310 1513 197 3 17 chr6 83970293 83970588 -98444654 + L1MA4A LINE L1 5443 5733 -450 6115 200 35 18 chr6 83970592 83972058 -98443184 + L1M3f LINE L1 7 1487 -4065 319 213 0 0 chr6 83972058 83972119 -98443123 + MSTA LTR MaLR 368 428 0 8931 174 24 4 chr6 83972119 83973739 -98441503 + MSTA-int LTR MaLR 1 1651 0 2449 161 26 14 chr6 83973741 83974157 -98441085 + MSTA LTR MaLR 3 423 -5 580 214 290 11 chr6 83974161 83974437 -98440805 - L1 LINE L1 -1457 4689 4337 1755 124 8 8 chr6 83974438 83974697 -98440545 + THE1C LTR MaLR 3 261 -114 634 302 82 4 chr6 83976370 83976644 -98438598 + L2 LINE L2 2688 2988 -325 299 336 44 22 chr6 83976673 83976810 -98438432 + L2 LINE L2 3133 3272 0 481 286 34 0 chr6 83976825 83976972 -98438270 + L1MEd LINE L1 3 154 -5965 2065 102 3 33 chr6 83977316 83977620 -98437622 + AluSg SINE Alu 1 295 -15 462 50 68 43 chr6 83977620 83977781 -98437461 + (TA)n Simple_repeat Simple_repeat 1 165 0 434 229 55 9 chr6 83978279 83978388 -98436854 - MLT1A2 LTR MaLR -260 114 1 1687 169 42 9 chr6 83978712 83979049 -98436193 + L1MA4A LINE L1 5932 6279 -24 28 29 0 0 chr6 83979122 83979157 -98436085 + AT_rich Low_complexity Low_complexity 1 35 0 279 122 0 0 chr6 83979168 83979217 -98436025 + (TG)n Simple_repeat Simple_repeat 2 50 0 376 304 126 46 chr6 83979555 83980206 -98435036 - L1 LINE L1 -2970 3176 2474 706 161 8 0 chr6 83980461 83980585 -98434657 - L1PB4 LINE L1 -2 6154 6030 3088 148 100 2 chr6 83980588 83981197 -98434045 - L1PB4 LINE L1 -221 5935 5262 320 308 26 43 chr6 83981387 83981504 -98433738 + MLT1K LTR MaLR 43 157 -431 1295 240 0 8 chr6 83981914 83982172 -98433070 + AluJo SINE Alu 1 256 -56 189 0 0 0 chr6 83982172 83982193 -98433049 + (A)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr6 83982267 83982295 -98432947 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr6 83982460 83982505 -98432737 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr6 83983837 83983867 -98431375 + AT_rich Low_complexity Low_complexity 1 30 0 24 91 0 0 chr6 83984055 83984121 -98431121 + AT_rich Low_complexity Low_complexity 1 66 0 4046 251 68 48 chr6 83984515 83985952 -98429290 + L1M4 LINE L1 24 1488 -5054 4027 263 25 14 chr6 83985935 83987316 -98427926 + L1M4 LINE L1 4266 5661 -983 * 3395 236 65 39 chr6 83987299 83989406 -98425836 + L1MD1 LINE L1 4062 6242 0 * 20182 168 24 34 chr6 83989655 83994298 -98420944 + L1MA1 LINE L1 14 4540 -3181 2425 63 0 6 chr6 83994298 83994616 -98420626 + L1PA6 LINE L1 5839 6154 0 20182 168 24 34 chr6 83994616 83997764 -98417478 + L1MA1 LINE L1 4540 7716 -5 252 389 14 29 chr6 83998583 83998722 -98416520 - L2 LINE L2 -2815 499 363 354 279 9 36 chr6 83999055 83999166 -98416076 - L2 LINE L2 -35 3278 3171 2306 178 98 37 chr6 84000318 84000386 -98414856 - MLT2B1 LTR ERVL 0 520 458 1072 214 17 29 chr6 84000386 84000624 -98414618 + MER8 DNA MER2_type 4 238 -1 2306 178 98 37 chr6 84000624 84001045 -98414197 - MLT2B1 LTR ERVL -62 458 1 596 296 30 39 chr6 84001796 84001984 -98413258 + MIR SINE MIR 17 204 -58 14966 151 25 27 chr6 84001984 84002336 -98412906 - Tigger4(Zombi) DNA MER2_type 0 2731 2380 2005 54 93 40 chr6 84002336 84002614 -98412628 - AluY SINE Alu -18 293 1 14966 151 25 27 chr6 84002614 84004996 -98410246 - Tigger4(Zombi) DNA MER2_type -351 2380 1 596 296 30 39 chr6 84004996 84005040 -98410202 + MIR SINE MIR 204 247 -15 5083 156 13 9 chr6 84005817 84007002 -98408240 + L1P4 LINE L1 4406 5596 -565 2470 200 28 15 chr6 84006972 84007512 -98407730 + L1PA15-16 LINE L1 2373 2919 -3930 * 42054 38 22 3 chr6 84007513 84013573 -98401669 + L1PA3 LINE L1 5 6181 0 1793 267 17 9 chr6 84013573 84014098 -98401144 + L1PA15-16 LINE L1 2905 3433 -3416 2173 117 49 26 chr6 84014153 84014503 -98400739 + THE1B LTR MaLR 7 364 0 10861 121 4 6 chr6 84014503 84016086 -98399156 + THE1B-int LTR MaLR 1 1580 0 2071 132 48 25 chr6 84016086 84016442 -98398800 + THE1B LTR MaLR 1 364 0 5363 229 26 7 chr6 84016456 84017831 -98397411 + L1PA15-16 LINE L1 3492 4893 -1956 347 277 54 0 chr6 84017833 84017945 -98397297 + L1PA16 LINE L1 2480 2597 -3549 5140 186 24 1 chr6 84017958 84019936 -98395306 + L1PA16 LINE L1 4193 6163 -3 213 389 75 36 chr6 84020249 84020555 -98394687 + L2 LINE L2 2955 3272 0 600 296 118 41 chr6 84020579 84021045 -98394197 + MLT1J LTR MaLR 1 502 -9 533 267 82 31 chr6 84021385 84021580 -98393662 + MER63A DNA MER1_type 4 208 -2 365 302 47 89 chr6 84021590 84022040 -98393202 - MLT1H LTR MaLR -1 548 118 3302 180 33 25 chr6 84022126 84022852 -98392390 + L1MB2 LINE L1 5439 6170 -1 1448 294 49 22 chr6 84022858 84023352 -98391890 + MLT1G LTR MaLR 24 530 -60 3086 207 89 10 chr6 84023367 84024144 -98391098 - L1MB7 LINE L1 -8 6176 5339 655 256 17 34 chr6 84024176 84024414 -98390828 + L1MA9 LINE L1 6039 6272 -40 751 187 6 6 chr6 84024432 84024598 -98390644 - L1MB7 LINE L1 -809 5337 5172 35 0 0 0 chr6 84025092 84025127 -98390115 + AT_rich Low_complexity Low_complexity 1 35 0 7645 29 0 0 chr6 84025127 84026389 -98388853 - L1PA3 LINE L1 -3 6152 4891 1881 177 38 25 chr6 84026717 84027084 -98388158 + MSTB1 LTR MaLR 1 372 -60 482 112 76 0 chr6 84027087 84027338 -98387904 + (TA)n Simple_repeat Simple_repeat 1 269 0 13844 89 4 1 chr6 84027339 84029288 -98385954 - L1P LINE L1 -1484 4662 2709 1574 101 0 0 chr6 84029288 84029506 -98385736 + L1PA7 LINE L1 5928 6154 0 341 111 19 0 chr6 84029522 84029576 -98385666 + MSTB1 LTR MaLR 378 432 0 2409 57 0 7 chr6 84030272 84030569 -98384673 - AluY SINE Alu -16 295 1 195 330 88 11 chr6 84031591 84031682 -98383560 + MER5B DNA MER1_type 8 105 -73 254 218 18 18 chr6 84032112 84032167 -98383075 - MER5B DNA MER1_type -123 55 1 519 248 22 54 chr6 84032482 84032704 -98382538 + L1M4 LINE L1 3620 3834 -2312 329 127 18 0 chr6 84032710 84032765 -98382477 - L1MCc LINE L1 -5353 1070 1015 2210 104 3 3 chr6 84032807 84033114 -98382128 - AluSp SINE Alu -6 307 1 1841 79 7 21 chr6 84034026 84034305 -98380937 - L1PA13 LINE L1 -11 6152 5878 21 0 0 0 chr6 84035768 84035789 -98379453 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr6 84036135 84036184 -98379058 + AT_rich Low_complexity Low_complexity 1 49 0 613 277 54 37 chr6 84036235 84036477 -98378765 - L1MCc LINE L1 -5397 1026 781 182 36 0 36 chr6 84036661 84036689 -98378553 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 3416 169 70 52 chr6 84036948 84037719 -98377523 + LTR1 LTR ERV1 1 785 0 16171 161 29 14 chr6 84037719 84040657 -98374585 + HUERS-P2 LTR ERV1 1 3088 0 3235 181 43 51 chr6 84040657 84041448 -98373794 + LTR1 LTR ERV1 1 785 0 266 333 51 14 chr6 84041595 84041733 -98373509 - MER5B DNA MER1_type -3 175 33 * 292 333 43 35 chr6 84041609 84041750 -98373492 + MER5A DNA MER1_type 33 174 -15 25 31 0 0 chr6 84043008 84043040 -98372202 + AT_rich Low_complexity Low_complexity 1 32 0 2216 66 0 17 chr6 84044217 84044535 -98370707 + AluY SINE Alu 1 313 0 308 306 192 10 chr6 84044986 84045179 -98370063 + MIR SINE MIR 34 261 -1 313 289 240 25 chr6 84046455 84046659 -98368583 + MIR SINE MIR 2 249 -13 68 48 0 0 chr6 84046990 84047093 -98368149 + AT_rich Low_complexity Low_complexity 1 103 0 3208 263 87 30 chr6 84047315 84049039 -98366203 + L1ME2 LINE L1 2191 3986 -2229 2453 271 110 9 chr6 84049091 84050884 -98364358 + L1ME2 LINE L1 4247 6224 -9 22 0 0 0 chr6 84050891 84050913 -98364329 + AT_rich Low_complexity Low_complexity 1 22 0 1688 189 31 25 chr6 84051026 84051385 -98363857 - MLT1A1 LTR MaLR 0 365 5 1883 158 7 3 chr6 84052019 84052310 -98362932 + AluSx SINE Alu 1 292 -20 672 279 48 10 chr6 84052461 84052669 -98362573 + MER20 DNA MER1_type 3 218 -1 1094 246 65 72 chr6 84052756 84053280 -98361962 + MLT2B1 LTR ERVL 1 520 0 8220 214 24 40 chr6 84054012 84056593 -98358649 + L1MB1 LINE L1 2959 5476 -692 2133 140 0 0 chr6 84056593 84056901 -98358341 + AluSx SINE Alu 1 308 -4 8220 214 24 40 chr6 84056901 84057584 -98357658 + L1MB1 LINE L1 5476 6168 0 27 73 0 0 chr6 84057596 84057651 -98357591 + AT_rich Low_complexity Low_complexity 1 55 0 204 125 0 0 chr6 84058289 84058321 -98356921 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 291 332 12 9 chr6 84059190 84059382 -98355860 + L1ME LINE L1 784 971 -5099 238 295 0 0 chr6 84059382 84059494 -98355748 + L1M3d LINE L1 1119 1230 -4661 6477 196 157 17 chr6 84059510 84061049 -98354193 + MER52A LTR ERV1 1 1755 0 229 302 49 25 chr6 84061049 84061294 -98353948 + L1ME LINE L1 1097 1347 -4914 350 126 58 274 chr6 84061382 84061605 -98353637 - MLT1D LTR MaLR -270 235 61 284 93 0 23 chr6 84061776 84061819 -98353423 - MER31B-int LTR ERV1 -4018 918 877 726 211 15 77 chr6 84061924 84062184 -98353058 - MER31B-int LTR ERV1 -4362 574 331 407 290 7 41 chr6 84062278 84062423 -98352819 - MER31B-int LTR ERV1 -4795 141 2 1621 159 69 94 chr6 84062451 84062598 -98352644 - MER31B LTR ERV1 0 466 317 2209 81 10 7 chr6 84062598 84062894 -98352348 - AluSp SINE Alu -16 297 1 1621 159 69 94 chr6 84062894 84063224 -98352018 - MER31B LTR ERV1 -149 317 1 191 105 53 0 chr6 84063739 84063777 -98351465 + GA-rich Low_complexity Low_complexity 2 41 0 559 316 109 25 chr6 84065464 84065822 -98349420 - L2 LINE L2 -1 3312 2925 186 71 0 0 chr6 84066888 84066916 -98348326 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 22 56 0 0 chr6 84067166 84067202 -98348040 + AT_rich Low_complexity Low_complexity 1 36 0 2820 165 19 23 chr6 84070206 84071005 -98344237 + L1MA8 LINE L1 4990 5789 -502 889 157 41 52 chr6 84071012 84071098 -98344144 + MER2 DNA MER2_type 11 96 -249 628 168 8 8 chr6 84071098 84071229 -98344013 + L1MA4A LINE L1 6167 6297 -6 889 157 41 52 chr6 84071229 84071335 -98343907 + MER2 DNA MER2_type 96 201 -144 2265 163 77 2 chr6 84071454 84071920 -98343322 + L1MA8 LINE L1 5786 6286 -5 304 294 9 9 chr6 84071930 84072046 -98343196 + L1ME1 LINE L1 6058 6162 -4 476 255 30 66 chr6 84072324 84072607 -98342635 + L1MC5 LINE L1 6692 7039 -1003 267 191 0 0 chr6 84072623 84072691 -98342551 + (TA)n Simple_repeat Simple_repeat 1 68 0 533 242 31 26 chr6 84072729 84072923 -98342319 + L1MC5 LINE L1 6976 7170 -791 29 28 0 0 chr6 84073259 84073295 -98341947 + AT_rich Low_complexity Low_complexity 1 36 0 315 0 0 0 chr6 84073704 84073739 -98341503 + (TG)n Simple_repeat Simple_repeat 2 36 0 254 275 80 91 chr6 84073842 84074118 -98341124 - MLT1J LTR MaLR -9 502 230 1052 208 13 26 chr6 84074986 84075212 -98340030 - MER58A DNA MER1_type -1 223 1 22 35 0 0 chr6 84076387 84076416 -98338826 + AT_rich Low_complexity Low_complexity 1 29 0 206 175 62 25 chr6 84076894 84076974 -98338268 + (TA)n Simple_repeat Simple_repeat 1 83 0 366 150 41 20 chr6 84076986 84077133 -98338109 + (TA)n Simple_repeat Simple_repeat 1 150 0 191 272 109 65 chr6 84077415 84077507 -98337735 - L2 LINE L2 -20 3252 3157 2391 48 0 0 chr6 84078192 84078487 -98336755 - L1PA4 LINE L1 -257 5898 5604 262 0 0 0 chr6 84078487 84078520 -98336722 + L1PA3 LINE L1 6116 6148 -7 476 310 9 0 chr6 84078815 84078931 -98336311 + L2 LINE L2 3144 3260 -12 514 351 67 22 chr6 84079168 84079627 -98335615 - L2 LINE L2 -184 3129 2640 645 39 0 0 chr6 84080934 84081012 -98334230 + AluY SINE Alu 55 132 -179 1368 77 0 0 chr6 84081112 84081282 -98333960 + AluY SINE Alu 130 299 -12 22 35 0 0 chr6 84081646 84081675 -98333567 + AT_rich Low_complexity Low_complexity 1 29 0 374 335 40 29 chr6 84082048 84082493 -98332749 + L1ME LINE L1 4911 5360 -786 362 342 51 61 chr6 84082503 84082912 -98332330 + L1ME LINE L1 5371 5775 -387 939 322 52 18 chr6 84083061 84083446 -98331796 - LTR16C LTR ERVL -92 399 2 31 0 0 0 chr6 84083534 84083565 -98331677 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 84083707 84083752 -98331490 + AT_rich Low_complexity Low_complexity 1 45 0 34 65 0 0 chr6 84083785 84083847 -98331395 + AT_rich Low_complexity Low_complexity 1 62 0 244 316 57 40 chr6 84084025 84084253 -98330989 + L1ME LINE L1 5555 5786 -335 423 370 36 19 chr6 84084361 84084669 -98330573 - L2 LINE L2 -2 3311 2999 448 296 22 7 chr6 84084879 84085014 -98330228 + MIR SINE MIR 25 161 -101 1091 210 24 131 chr6 84085017 84085215 -98330027 + MLT1D LTR MaLR 2 133 -372 1208 233 56 0 chr6 84085215 84085481 -98329761 + AluJo SINE Alu 2 282 -30 1091 210 24 131 chr6 84085481 84085701 -98329541 + MLT1D LTR MaLR 133 375 -130 1963 171 25 0 chr6 84085701 84086021 -98329221 + MSTA LTR MaLR 1 328 -100 1456 166 157 15 chr6 84086021 84086358 -98328884 + MSTA LTR MaLR 1 385 -43 1950 154 128 13 chr6 84086358 84086742 -98328500 + MSTA LTR MaLR 1 428 0 6170 149 20 57 chr6 84086744 84087926 -98327316 + MSTA-int LTR MaLR 3 1141 -439 352 366 158 10 chr6 84088485 84088687 -98326555 + MIR SINE MIR 31 262 0 407 245 86 13 chr6 84090009 84090160 -98325082 + MIR SINE MIR 91 252 -10 24 32 0 0 chr6 84091116 84091147 -98324095 + AT_rich Low_complexity Low_complexity 1 31 0 5144 25 0 0 chr6 84092287 84092899 -98322343 - L1PA2 LINE L1 -1248 4898 4287 7946 11 0 0 chr6 84092900 84094155 -98321087 + L1PA2 LINE L1 4901 6155 0 1194 264 106 78 chr6 84094290 84094318 -98320924 + LTR50 LTR ERVL 15 41 -754 1600 228 20 57 chr6 84094318 84094778 -98320464 - LTR47B LTR ERVL 0 443 1 1194 264 106 78 chr6 84094778 84095504 -98319738 + LTR50 LTR ERVL 41 790 -5 380 271 0 0 chr6 84095508 84095593 -98319649 - MER5A DNA MER1_type -95 94 10 947 59 0 0 chr6 84095919 84096037 -98319205 + L1PA3 LINE L1 6029 6146 -9 2127 126 10 0 chr6 84096181 84096491 -98318751 - AluSq SINE Alu 0 313 1 1861 154 7 13 chr6 84096495 84096793 -98318449 - AluJb SINE Alu -8 304 9 1868 141 0 52 chr6 84097776 84098081 -98317161 - AluSx SINE Alu -23 289 1 4007 103 13 10 chr6 84098410 84099030 -98316212 - L1PA7 LINE L1 -2091 4055 3434 9636 81 0 1 chr6 84099030 84101198 -98314044 + L1PA7 LINE L1 4033 6170 0 485 315 93 33 chr6 84101212 84101482 -98313760 - L3 LINE CR1 -151 1426 1141 2106 108 19 16 chr6 84101623 84101930 -98313312 - AluSg SINE Alu -2 308 1 2875 68 0 0 chr6 84102247 84102614 -98312628 - L1P LINE L1 -1095 5051 4685 3654 46 0 2 chr6 84102614 84103068 -98312174 + L1PA5 LINE L1 5699 6151 -3 23 0 0 0 chr6 84103278 84103301 -98311941 + AT_rich Low_complexity Low_complexity 1 23 0 343 323 61 12 chr6 84104104 84104268 -98310974 + Charlie8 DNA MER1_type 2 173 -2244 24 32 0 0 chr6 84105343 84105374 -98309868 + AT_rich Low_complexity Low_complexity 1 31 0 181 336 172 16 chr6 84105391 84105513 -98309729 - MIR SINE MIR -62 200 60 1917 23 16 16 chr6 84105535 84105865 -98309377 - L1P2 LINE L1 -631 5524 5195 4771 41 7 0 chr6 84105865 84106447 -98308795 + L1PA4 LINE L1 5567 6152 -3 447 292 111 47 chr6 84106622 84107826 -98307416 - L1M4 LINE L1 -1967 4179 2899 1452 253 55 39 chr6 84108031 84108644 -98306598 - L1M4 LINE L1 -1202 5646 5024 1111 217 58 0 chr6 84108653 84108929 -98306313 - L1MD1 LINE L1 -7 6235 5944 1695 166 27 0 chr6 84108940 84109271 -98305971 - L1MA4A LINE L1 -6 6297 5958 5190 179 50 98 chr6 84109279 84109980 -98305262 - L1M4 LINE L1 -1825 5023 4290 7677 20 2 2 chr6 84109980 84111504 -98303738 + L1PA2 LINE L1 4632 6155 0 5190 179 50 98 chr6 84111504 84112446 -98302796 - L1M4 LINE L1 -2558 4290 3459 5337 232 39 4 chr6 84112467 84113563 -98301679 - L1M4 LINE L1 -5711 1138 4 1934 229 84 20 chr6 84113565 84114096 -98301146 - L1MD1 LINE L1 -284 5958 5463 440 61 37 12 chr6 84114096 84114178 -98301064 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 1934 229 84 20 chr6 84114178 84114568 -98300674 - L1MD1 LINE L1 -779 5463 4865 550 193 13 33 chr6 84114599 84114749 -98300493 - L1M2 LINE L1 -4818 2031 1885 * 647 254 76 60 chr6 84114724 84115224 -98300018 - L1MD1 LINE L1 -1335 5513 5006 * 1712 266 89 27 chr6 84115203 84116165 -98299077 - L1MD1 LINE L1 -2169 4679 3658 2318 243 40 48 chr6 84116199 84116410 -98298832 - L1M4 LINE L1 -1765 4381 4170 2266 77 43 13 chr6 84116410 84116710 -98298532 - AluY SINE Alu -2 309 1 2318 243 40 48 chr6 84116710 84117413 -98297829 - L1M4 LINE L1 -1976 4170 3474 2075 241 71 80 chr6 84117428 84117651 -98297591 - L1MC/D LINE L1 -743 5403 5180 1919 141 49 30 chr6 84117651 84118019 -98297223 - THE1C LTR MaLR 0 375 1 8882 145 64 11 chr6 84118019 84119519 -98295723 - THE1C-int LTR MaLR 0 1580 2 1747 150 46 40 chr6 84119520 84119893 -98295349 - THE1C LTR MaLR 0 375 1 2075 241 71 80 chr6 84119893 84120104 -98295138 - L1MC/D LINE L1 -965 5181 4970 2068 122 0 7 chr6 84120104 84120391 -98294851 - AluSc SINE Alu -24 285 1 2075 241 71 80 chr6 84120391 84120676 -98294566 - L1MC/D LINE L1 -1176 4970 4684 607 248 8 0 chr6 84120676 84120797 -98294445 - FLAM_A SINE Alu -11 122 1 2075 241 71 80 chr6 84120797 84121576 -98293666 - L1MC/D LINE L1 -1462 4684 3999 767 198 45 28 chr6 84121770 84121947 -98293295 + MER5A DNA MER1_type 8 187 -2 2255 98 46 23 chr6 84123151 84123498 -98291744 + THE1A LTR MaLR 1 355 0 13514 204 31 16 chr6 84124518 84126885 -98288357 + L1MA4 LINE L1 2 2331 -4151 195 42 0 0 chr6 84126885 84126909 -98288333 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 13514 204 31 16 chr6 84126909 84130934 -98284308 + L1MA4 LINE L1 2331 6471 -11 210 91 0 0 chr6 84131472 84131505 -98283737 + (T)n Simple_repeat Simple_repeat 1 33 0 42427 36 22 1 chr6 84131513 84137532 -98277710 - L1PA2 LINE L1 -4 6151 4 1942 267 53 10 chr6 84138559 84139230 -98276012 + L2 LINE L2 2428 3124 -189 2898 202 4 9 chr6 84142034 84142594 -98272648 + MER41D LTR ERV1 1 557 0 2522 153 9 30 chr6 84143657 84144087 -98271155 + MER61B LTR ERV1 5 425 0 759 224 38 48 chr6 84144088 84144298 -98270944 + MER61B-int LTR ERV1 2 209 -5008 4352 142 23 60 chr6 84144303 84145200 -98270042 + MER61B-int LTR ERV1 364 1213 -4004 * 24769 110 27 11 chr6 84145195 84148992 -98266250 + MER61B-int LTR ERV1 1361 5217 0 2540 159 14 7 chr6 84148992 84149414 -98265828 + MER61B LTR ERV1 1 425 0 237 180 0 0 chr6 84149717 84149767 -98265475 + (TA)n Simple_repeat Simple_repeat 2 51 0 299 347 84 18 chr6 84150825 84150992 -98264250 + LTR33 LTR ERVL 1 178 -343 208 147 0 0 chr6 84151403 84151437 -98263805 + (TA)n Simple_repeat Simple_repeat 2 35 0 321 260 29 48 chr6 84151443 84151547 -98263695 + L1MC4 LINE L1 6614 6715 -1327 2889 80 82 7 chr6 84152070 84152483 -98262759 + MLT2A1 LTR ERVL 1 444 0 266 244 34 67 chr6 84152852 84152971 -98262271 + ERVL LTR ERVL 4909 5023 -741 1060 314 69 13 chr6 84153418 84153880 -98261362 + LTR33 LTR ERVL 21 508 -13 283 346 48 61 chr6 84154656 84154884 -98260358 + MIR SINE MIR 20 244 -18 1763 177 44 136 chr6 84154953 84155519 -98259723 - MER67D LTR ERV1 0 514 1 193 284 118 49 chr6 84155732 84155834 -98259408 + MIR SINE MIR 76 184 -78 25 0 0 0 chr6 84155971 84155996 -98259246 + AT_rich Low_complexity Low_complexity 1 25 0 594 114 0 11 chr6 84157990 84158078 -98257164 + MER4A LTR ERV1 12 98 -566 1539 141 19 79 chr6 84158078 84158439 -98256803 + MER4A LTR ERV1 261 658 -6 201 39 0 0 chr6 84158445 84158471 -98256771 + (TC)n Simple_repeat Simple_repeat 2 27 0 3265 118 51 2 chr6 84158634 84159161 -98256081 - MER41A LTR ERV1 0 554 2 2017 141 0 0 chr6 84160155 84160452 -98254790 - AluSx SINE Alu -15 297 1 22 35 0 0 chr6 84160808 84160837 -98254405 + AT_rich Low_complexity Low_complexity 1 29 0 2277 252 91 13 chr6 84161642 84162190 -98253052 - MLT1E LTR MaLR -2 591 1 25 65 0 0 chr6 84162532 84162578 -98252664 + AT_rich Low_complexity Low_complexity 1 46 0 2174 117 0 7 chr6 84163166 84163464 -98251778 + AluSc SINE Alu 6 301 -8 22 35 0 0 chr6 84164040 84164069 -98251173 + AT_rich Low_complexity Low_complexity 1 29 0 188 224 0 17 chr6 84164070 84164128 -98251114 + (TATG)n Simple_repeat Simple_repeat 4 60 0 380 304 24 8 chr6 84164271 84164396 -98250846 + L2 LINE L2 3187 3313 0 268 347 40 16 chr6 84164846 84164970 -98250272 - L2 LINE L2 -12 3301 3175 23 33 0 0 chr6 84165085 84165115 -98250127 + AT_rich Low_complexity Low_complexity 1 30 0 2140 102 0 0 chr6 84165295 84165607 -98249635 + AluSc SINE Alu 1 309 0 239 299 21 124 chr6 84166323 84166517 -98248725 - MER5B DNA MER1_type -3 175 2 305 213 13 27 chr6 84167197 84167272 -98247970 + MIR3 SINE MIR 114 187 -21 2504 215 67 60 chr6 84170954 84171328 -98243914 + L1MD3 LINE L1 6485 6855 -1140 378 85 0 0 chr6 84171328 84171387 -98243855 + (CA)n Simple_repeat Simple_repeat 2 60 0 2504 215 67 60 chr6 84171387 84171857 -98243385 + L1MD3 LINE L1 6855 7320 -675 213 65 0 0 chr6 84171857 84171888 -98243354 + (CA)n Simple_repeat Simple_repeat 1 31 0 2504 215 67 60 chr6 84171888 84172454 -98242788 + L1MD3 LINE L1 7320 7964 -31 15117 203 40 24 chr6 84172467 84173431 -98241811 + L1PA16 LINE L1 1 948 -5921 345 24 0 0 chr6 84173431 84173473 -98241769 + (TG)n Simple_repeat Simple_repeat 2 43 0 15117 203 40 24 chr6 84173473 84175908 -98239334 + L1PA16 LINE L1 948 3342 -3527 2800 16 0 0 chr6 84175908 84176215 -98239027 + AluYa5 SINE Alu 1 307 -4 15117 203 40 24 chr6 84176215 84178445 -98236797 + L1PA16 LINE L1 3342 5742 -1127 2396 93 3 0 chr6 84178445 84178745 -98236497 + AluSp SINE Alu 1 301 -12 15117 203 40 24 chr6 84178745 84179883 -98235359 + L1PA16 LINE L1 5742 6860 -9 45 45 0 0 chr6 84179883 84179949 -98235293 + AT_rich Low_complexity Low_complexity 1 66 0 2096 136 0 0 chr6 84179951 84180246 -98234996 + AluSq SINE Alu 3 297 -16 490 268 78 0 chr6 84180290 84180469 -98234773 + MIR SINE MIR 70 262 0 708 235 62 17 chr6 84180608 84180787 -98234455 + MER20 DNA MER1_type 33 219 0 33 43 0 0 chr6 84182099 84182146 -98233096 + AT_rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chr6 84182465 84182491 -98232751 + (GA)n Simple_repeat Simple_repeat 1 26 0 243 305 67 0 chr6 84182842 84182947 -98232295 + L1MEc LINE L1 1116 1227 -5494 314 301 58 62 chr6 84182951 84183177 -98232065 + L1MEc LINE L1 1186 1410 -5120 371 287 93 62 chr6 84183310 84183631 -98231611 + L1MEc LINE L1 2287 2617 -3923 340 299 22 11 chr6 84183653 84183924 -98231318 + L1MEc LINE L1 3475 3748 -2792 22 56 0 0 chr6 84184046 84184082 -98231160 + AT_rich Low_complexity Low_complexity 1 36 0 413 271 132 28 chr6 84184204 84184455 -98230787 + L1MEc LINE L1 3891 4167 -2373 764 264 108 34 chr6 84184459 84184868 -98230374 + L1MEc LINE L1 4210 4648 -1892 255 257 92 92 chr6 84236902 84237174 -98178068 - L1ME LINE L1 -590 5580 5309 309 330 19 5 chr6 84237591 84237806 -98177436 - L1ME LINE L1 -1299 4847 4630 1948 124 3 41 chr6 84237915 84238230 -98177012 + AluSq SINE Alu 1 303 -10 25 31 0 0 chr6 84238274 84238306 -98176936 + AT_rich Low_complexity Low_complexity 1 32 0 908 104 8 0 chr6 84238441 84238566 -98176676 - THE1C LTR MaLR 0 364 239 929 121 8 0 chr6 84238566 84238698 -98176544 - THE1C LTR MaLR -242 133 1 23 68 0 0 chr6 84238879 84238923 -98176319 + AT_rich Low_complexity Low_complexity 1 44 0 329 274 10 39 chr6 84239554 84239656 -98175586 - L2 LINE L2 0 3272 3174 206 31 0 31 chr6 84239952 84239984 -98175258 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 238 105 228 0 chr6 84240218 84240275 -98174967 + L1MC4 LINE L1 6650 6719 -1323 275 199 81 0 chr6 84240298 84240459 -98174783 + (TA)n Simple_repeat Simple_repeat 1 174 0 300 378 54 15 chr6 84240699 84240903 -98174339 - MIR SINE MIR -43 219 8 182 61 0 30 chr6 84241220 84241253 -98173989 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 551 274 123 79 chr6 84242348 84242478 -98172764 - L2 LINE L2 -2 3311 3188 1709 146 84 34 chr6 84242478 84242835 -98172407 + THE1C LTR MaLR 1 375 0 551 274 123 79 chr6 84242835 84243135 -98172107 - L2 LINE L2 -125 3188 2862 208 226 12 12 chr6 84245289 84245373 -98169869 + (TA)n Simple_repeat Simple_repeat 2 85 0 1310 184 20 35 chr6 84245554 84245809 -98169433 + MLT1A1 LTR MaLR 4 254 -111 817 216 31 26 chr6 84245842 84246036 -98169206 + MLT1A1 LTR MaLR 171 365 0 27 49 0 0 chr6 84246074 84246115 -98169127 + AT_rich Low_complexity Low_complexity 1 41 0 434 329 7 0 chr6 84246137 84246292 -98168950 + L1MC5 LINE L1 6636 6791 -1170 2927 130 11 28 chr6 84246338 84246799 -98168443 + MLT2A2 LTR ERVL 1 453 0 13551 79 8 0 chr6 84246799 84248544 -98166698 + HERVL-A2 LTR ERVL 1 1759 -3895 401 74 56 0 chr6 84248532 84248586 -98166656 + HERVL-A1 LTR ERVL 3002 3058 -2596 * 9890 101 14 1 chr6 84248586 84249927 -98165315 + HERVL-A1 LTR ERVL 1688 3046 -2608 2544 104 15 40 chr6 84249916 84250321 -98164921 + HERVL-A1 LTR ERVL 5005 5399 -255 * 1777 92 15 0 chr6 84250525 84250785 -98164457 + HERVL-A1 LTR ERVL 5391 5654 0 2740 79 14 52 chr6 84250785 84251205 -98164037 + MLT2A1 LTR ERVL 1 404 -40 231 179 26 13 chr6 84251219 84251297 -98163945 + (TA)n Simple_repeat Simple_repeat 1 79 0 313 100 35 0 chr6 84251297 84251354 -98163888 + MLT2A2 LTR ERVL 403 453 0 1417 218 73 126 chr6 84251355 84252502 -98162740 + L1MC5 LINE L1 6842 7927 -34 593 165 0 0 chr6 84252604 84252701 -98162541 + FRAM SINE Alu 16 112 -64 258 284 57 23 chr6 84252843 84252931 -98162311 + L2 LINE L2 3173 3263 -9 329 379 23 15 chr6 84253805 84253937 -98161305 + L2 LINE L2 3139 3271 -1 564 236 102 53 chr6 84254243 84254468 -98160774 - L2 LINE L2 -3 3310 3075 258 266 145 16 chr6 84254507 84254631 -98160611 - L2 LINE L2 -3132 182 43 2384 77 0 10 chr6 84254949 84255246 -98159996 + AluSg SINE Alu 1 294 -16 1858 115 236 6 chr6 84256111 84256459 -98158783 - MSTA LTR MaLR 0 428 1 215 154 26 0 chr6 84256479 84256518 -98158724 + CT-rich Low_complexity Low_complexity 1 40 0 416 296 168 27 chr6 84257223 84257443 -98157799 - MIR SINE MIR -10 252 2 304 217 35 175 chr6 84259492 84259635 -98155607 - L2 LINE L2 0 3313 3191 197 292 46 0 chr6 84259965 84260030 -98155212 + L2 LINE L2 2444 2511 -803 343 338 14 28 chr6 84260227 84260369 -98154873 + MIR SINE MIR 52 191 -71 418 315 104 31 chr6 84262307 84262596 -98152646 - L2 LINE L2 -10 3303 2994 25 0 0 0 chr6 84262601 84262626 -98152616 + AT_rich Low_complexity Low_complexity 1 25 0 301 350 0 0 chr6 84262629 84262709 -98152533 + L2 LINE L2 3160 3239 -33 921 171 18 161 chr6 84262815 84263095 -98152147 - MLT1B LTR MaLR -1 389 150 41537 61 1 1 chr6 84263099 84269236 -98146006 + L1PA5 LINE L1 13 6149 -5 762 197 66 7 chr6 84269236 84269388 -98145854 - MLT1B LTR MaLR -229 161 1 1801 264 28 11 chr6 84269401 84269859 -98145383 - MLT1B-int LTR MaLR -12 1723 1258 695 262 62 11 chr6 84270070 84270342 -98144900 - MLT1B-int LTR MaLR -487 884 508 1575 164 30 30 chr6 84270346 84270771 -98144471 - AluJo SINE Alu 0 425 1 295 279 4 0 chr6 84270777 84270859 -98144383 - MLT1B-int LTR MaLR -839 532 433 968 225 11 2 chr6 84270860 84271158 -98144084 - MLT1B-int LTR MaLR -1175 196 2 1168 216 84 74 chr6 84271164 84271543 -98143699 - MLT1B LTR MaLR -7 383 1 290 360 98 27 chr6 84272104 84272329 -98142913 + MIR SINE MIR 12 252 -10 240 35 0 0 chr6 84272654 84272683 -98142559 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 315 85 0 0 chr6 84272682 84272729 -98142513 + (CA)n Simple_repeat Simple_repeat 1 47 0 232 329 25 0 chr6 84273231 84273310 -98141932 - L2 LINE L2 -2 3311 3231 586 267 102 19 chr6 84273484 84273690 -98141552 - MIR SINE MIR -3 259 37 1856 129 36 0 chr6 84273720 84273998 -98141244 - AluSx SINE Alu -24 288 1 25 0 0 0 chr6 84275236 84275261 -98139981 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr6 84275301 84275326 -98139916 + AT_rich Low_complexity Low_complexity 1 25 0 218 32 32 0 chr6 84275370 84275401 -98139841 + (TA)n Simple_repeat Simple_repeat 1 32 0 2155 180 37 33 chr6 84275401 84275843 -98139399 - L1MA8 LINE L1 -76 6215 5768 2346 56 0 3 chr6 84275843 84276179 -98139063 - AluY SINE Alu 0 335 1 2155 180 37 33 chr6 84276179 84276223 -98139019 - L1MA8 LINE L1 -523 5768 5726 327 345 45 0 chr6 84276248 84276358 -98138884 - L2 LINE L2 0 3272 3158 506 305 25 35 chr6 84277189 84277386 -98137856 - MIR SINE MIR -60 202 8 1541 168 55 50 chr6 84277754 84278117 -98137125 - MLT1A1 LTR MaLR 0 365 1 663 273 67 16 chr6 84278415 84278609 -98136633 - MIR SINE MIR -56 206 3 2347 142 61 7 chr6 84279305 84279715 -98135527 + MSTB1 LTR MaLR 1 432 0 2384 168 68 42 chr6 84280195 84280639 -98134603 + MLT2B2 LTR ERVL 2 462 -53 306 50 0 0 chr6 84280639 84280679 -98134563 + (CA)n Simple_repeat Simple_repeat 1 40 0 2384 168 68 42 chr6 84280679 84280735 -98134507 + MLT2B2 LTR ERVL 462 515 0 219 337 10 30 chr6 84281364 84281465 -98133777 + MER5B DNA MER1_type 2 100 -78 543 43 0 0 chr6 84282059 84282129 -98133113 + (TA)n Simple_repeat Simple_repeat 2 71 0 186 370 16 31 chr6 84282468 84282595 -98132647 - L2 LINE L2 -939 2375 2251 209 229 16 0 chr6 84283003 84283064 -98132178 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 25 75 0 0 chr6 84283344 84283397 -98131845 + AT_rich Low_complexity Low_complexity 1 53 0 1196 325 106 65 chr6 84283725 84285317 -98129925 + L2 LINE L2 1315 2970 -344 2445 122 8 24 chr6 84285479 84285849 -98129393 + THE1B LTR MaLR 1 364 0 876 94 16 0 chr6 84285849 84285976 -98129266 + THE1B-int LTR MaLR 1 129 -1451 11612 98 3 1 chr6 84285976 84287520 -98127722 + THE1B-int LTR MaLR 33 1580 0 2378 128 11 22 chr6 84287520 84287888 -98127354 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr6 84288083 84288104 -98127138 + AT_rich Low_complexity Low_complexity 1 21 0 267 263 75 0 chr6 84288756 84288889 -98126353 - L1MC4 LINE L1 -2 8040 7898 207 0 0 0 chr6 84289330 84289353 -98125889 + (T)n Simple_repeat Simple_repeat 1 23 0 882 259 38 86 chr6 84289874 84290541 -98124701 + L1ME LINE L1 766 1398 -4981 1055 122 0 0 chr6 84290560 84290716 -98124526 - L1PA13 LINE L1 -11 6152 5997 10070 181 30 12 chr6 84290716 84293233 -98122009 + L1P LINE L1 2448 5015 -1131 2191 183 248 76 chr6 84293252 84294105 -98121137 - LTR28 LTR ERV1 0 1020 30 976 159 0 0 chr6 84294106 84294282 -98120960 + L1P LINE L1 5026 5201 -945 618 280 139 27 chr6 84294306 84294687 -98120555 + L1ME LINE L1 1328 1665 -4717 1969 113 41 0 chr6 84294687 84294978 -98120264 + AluSx SINE Alu 1 303 -9 618 280 139 27 chr6 84294978 84295164 -98120078 + L1ME LINE L1 1665 2088 -4294 2527 276 84 27 chr6 84295168 84295445 -98119797 - L1MC4 LINE L1 -217 7825 7565 2297 78 0 0 chr6 84295445 84295755 -98119487 - AluSx SINE Alu 0 310 1 2527 276 84 27 chr6 84295755 84296547 -98118695 - L1MC4 LINE L1 -477 7565 6694 1463 277 106 35 chr6 84296617 84297422 -98117820 - L1MC4a LINE L1 -1487 6321 5460 396 227 48 78 chr6 84297429 84297689 -98117553 - L1MC4a LINE L1 -747 5399 5153 224 291 19 0 chr6 84297714 84297817 -98117425 + (TA)n Simple_repeat Simple_repeat 1 105 0 382 314 54 18 chr6 84297856 84298133 -98117109 - L1MC4a LINE L1 -1038 5108 4822 1310 225 20 34 chr6 84298264 84298619 -98116623 - L1MA9 LINE L1 -48 6264 5915 778 191 27 6 chr6 84298612 84298795 -98116447 + L1 LINE L1 3604 3790 -2356 * 2792 221 60 15 chr6 84298803 84299590 -98115652 + L1 LINE L1 2847 3668 -2478 451 282 114 20 chr6 84299594 84299849 -98115393 - L1MC4a LINE L1 -1483 4663 4385 2561 229 58 43 chr6 84299882 84300316 -98114926 - L1MC3 LINE L1 -318 7467 7014 186 103 0 0 chr6 84300316 84300345 -98114897 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2561 229 58 43 chr6 84300345 84300723 -98114519 - L1MC3 LINE L1 -771 7014 6643 302 214 34 45 chr6 84302976 84303065 -98112177 - L1MC4 LINE L1 -1339 6703 6616 225 132 0 0 chr6 84303086 84303124 -98112118 + (TA)n Simple_repeat Simple_repeat 2 39 0 29 0 0 0 chr6 84303150 84303179 -98112063 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr6 84303768 84303806 -98111436 + AT_rich Low_complexity Low_complexity 1 38 0 770 202 92 0 chr6 84305733 84305906 -98109336 - MER5A DNA MER1_type 0 189 1 655 266 46 78 chr6 84306387 84306925 -98108317 + L1MC5 LINE L1 6739 7256 -733 326 264 126 47 chr6 84307081 84307422 -98107820 + L1MC5 LINE L1 7314 7681 -280 4756 169 14 28 chr6 84307479 84308435 -98106807 - L1MA8 LINE L1 -3 6288 5347 4375 211 29 76 chr6 84308435 84308546 -98106696 - Charlie1a DNA MER1_type -1365 1396 1281 1519 199 21 0 chr6 84308546 84308827 -98106415 + AluJo SINE Alu 1 287 -25 4375 211 29 76 chr6 84308827 84309285 -98105957 - Charlie1a DNA MER1_type -1480 1281 803 927 121 42 0 chr6 84309285 84309450 -98105792 - L1MA3 LINE L1 0 6305 6134 4375 211 29 76 chr6 84309450 84310276 -98104966 - Charlie1a DNA MER1_type -1958 803 66 2397 74 0 0 chr6 84311285 84311584 -98103658 + AluY SINE Alu 1 299 -12 24 53 0 0 chr6 84311676 84311714 -98103528 + AT_rich Low_complexity Low_complexity 1 38 0 192 340 32 21 chr6 84312864 84312958 -98102284 + MER5A DNA MER1_type 92 186 -3 13993 174 26 21 chr6 84313224 84313914 -98101328 - L1MA2 LINE L1 0 7723 7038 180 0 0 0 chr6 84313914 84313934 -98101308 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1975 132 4 0 chr6 84313935 84314216 -98101026 - AluSx SINE Alu -30 282 1 13993 174 26 21 chr6 84314216 84317960 -98097282 - L1MA2 LINE L1 -684 7039 3267 3437 201 60 5 chr6 84317976 84318641 -98096601 - L1MA2 LINE L1 -6848 717 16 214 357 24 0 chr6 84318651 84318735 -98096507 + L2 LINE L2 3224 3309 -4 879 200 11 11 chr6 84319123 84319298 -98095944 - AluJb SINE Alu -4 308 134 1685 178 3 17 chr6 84319716 84320028 -98095214 + AluSx SINE Alu 1 308 0 2235 75 0 0 chr6 84320608 84320887 -98094355 - AluY SINE Alu -12 299 21 327 248 137 0 chr6 84320978 84321095 -98094147 + L1MEc LINE L1 37 169 -6227 274 340 140 20 chr6 84322086 84322236 -98093006 + MIR3 SINE MIR 30 197 -11 451 270 87 30 chr6 84323198 84323745 -98091497 - L1MC/D LINE L1 -748 5398 4918 464 310 128 42 chr6 84324160 84324638 -98090604 - L1MC/D LINE L1 -1714 4432 3914 530 339 131 24 chr6 84325356 84325737 -98089505 - L2 LINE L2 -6 3307 2886 26 30 0 0 chr6 84326198 84326231 -98089011 + AT_rich Low_complexity Low_complexity 1 33 0 4480 28 2 0 chr6 84326859 84327393 -98087849 - L1PA4 LINE L1 -342 5813 5279 2491 36 0 0 chr6 84327393 84327754 -98087488 + L1PA4 LINE L1 5844 6206 0 389 341 104 14 chr6 84328083 84328303 -98086939 - MIR SINE MIR -17 245 6 278 299 83 18 chr6 84328989 84329206 -98086036 + L1ME3A LINE L1 4695 4925 -1221 552 183 0 0 chr6 84329235 84329328 -98085914 - L1MC/D LINE L1 -804 5540 5448 1846 67 0 0 chr6 84329331 84329556 -98085686 - AluY SINE Alu -1 310 86 538 260 104 11 chr6 84329579 84329802 -98085440 - L1ME LINE L1 -5823 247 2 438 333 6 0 chr6 84329805 84329961 -98085281 + L1ME3A LINE L1 5706 5862 -308 943 233 22 40 chr6 84330076 84330304 -98084938 - MER58A DNA MER1_type 0 224 1 21 36 0 0 chr6 84330365 84330393 -98084849 + AT_rich Low_complexity Low_complexity 1 28 0 270 356 40 7 chr6 84331084 84331233 -98084009 + L2 LINE L2 3159 3312 -1 23 33 0 0 chr6 84332749 84332779 -98082463 + AT_rich Low_complexity Low_complexity 1 30 0 30 59 0 0 chr6 84332982 84333033 -98082209 + AT_rich Low_complexity Low_complexity 1 51 0 49 32 0 0 chr6 84333823 84333886 -98081356 + AT_rich Low_complexity Low_complexity 1 63 0 423 0 0 0 chr6 84333886 84333933 -98081309 + (TG)n Simple_repeat Simple_repeat 2 48 0 1873 355 70 38 chr6 84334721 84336403 -98078839 + HERVL LTR ERVL 1839 3574 -2190 723 293 132 37 chr6 84336654 84337410 -98077832 + HERVL LTR ERVL 3860 4736 -882 292 321 28 19 chr6 84337517 84337623 -98077619 + HERVL LTR ERVL 4892 4998 -766 277 372 7 20 chr6 84337810 84337958 -98077284 + HERVL LTR ERVL 5197 5342 -422 1918 156 39 28 chr6 84338577 84338937 -98076305 - THE1B LTR MaLR 0 364 1 183 205 0 0 chr6 84339544 84339583 -98075659 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 265 267 111 28 chr6 84340640 84340820 -98074422 - L1ME LINE L1 -451 5670 5476 25 0 0 0 chr6 84341236 84341261 -98073981 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr6 84341290 84341332 -98073910 + AT_rich Low_complexity Low_complexity 1 42 0 234 198 0 48 chr6 84341665 84341748 -98073494 + (TATATG)n Simple_repeat Simple_repeat 4 174 0 244 270 0 14 chr6 84341748 84341822 -98073420 + (TATG)n Simple_repeat Simple_repeat 3 75 0 422 236 28 0 chr6 84343855 84343961 -98071281 + MER94 DNA DNA 11 119 -15 1773 173 32 0 chr6 84344039 84344381 -98070861 - L1 LINE L1 -1098 5048 4696 2604 144 20 7 chr6 84344387 84344832 -98070410 - L1MA2 LINE L1 0 7723 7273 2992 210 95 121 chr6 84344832 84346263 -98068979 + MER52A LTR ERV1 1 1394 -361 422 205 12 0 chr6 84346259 84346342 -98068900 + MER52A LTR ERV1 1672 1755 0 * 10908 194 27 14 chr6 84346342 84349268 -98065974 - L1MA2 LINE L1 -447 7276 3942 651 103 21 10 chr6 84349272 84349369 -98065873 + MER4A LTR ERV1 1 98 -566 1573 178 17 25 chr6 84349369 84349717 -98065525 + MER4A LTR ERV1 261 664 0 892 219 23 0 chr6 84349722 84349941 -98065301 - L1MA2 LINE L1 -3631 3934 3711 659 91 0 0 chr6 84349941 84350029 -98065213 - AluY SINE Alu -20 291 204 14630 162 55 1 chr6 84350029 84352656 -98062586 - L1MA2 LINE L1 -3843 3722 955 1905 118 26 0 chr6 84352713 84353017 -98062225 + L1M1 LINE L1 2560 2871 -4694 4619 198 21 30 chr6 84353020 84353963 -98061279 - L1MA2 LINE L1 -6616 949 15 3872 173 35 16 chr6 84353961 84354794 -98060448 - L1 LINE L1 -1434 4712 3864 * 1511 172 5 6 chr6 84354791 84355252 -98059990 + L1MA4 LINE L1 5029 5489 -743 * 466 152 13 0 chr6 84355682 84355761 -98059481 - MADE1 DNA Mariner 0 80 1 240 163 0 0 chr6 84356024 84356067 -98059175 + (TG)n Simple_repeat Simple_repeat 2 44 0 4221 150 28 15 chr6 84356818 84357618 -98057624 + L1MA4 LINE L1 5476 6285 -15 801 149 14 0 chr6 84357742 84357890 -98057352 - L1MA6 LINE L1 0 6300 6151 226 65 0 0 chr6 84358529 84358575 -98056667 - LTR66 LTR ERVL -173 437 392 214 111 61 20 chr6 84358614 84358713 -98056529 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 342 0 0 0 chr6 84358727 84358765 -98056477 + (TC)n Simple_repeat Simple_repeat 2 39 0 261 0 0 0 chr6 84358764 84358793 -98056449 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 1426 214 11 7 chr6 84358793 84359078 -98056164 - AluJb SINE Alu -26 286 1 736 226 63 117 chr6 84359078 84359123 -98056119 - Charlie4a DNA MER1_type -1526 435 389 2067 113 0 7 chr6 84359123 84359414 -98055828 + AluSx SINE Alu 1 289 -23 736 226 63 117 chr6 84359414 84359677 -98055565 - Charlie4a DNA MER1_type -1572 389 158 2279 173 38 0 chr6 84359677 84360098 -98055144 - L1PA16 LINE L1 -9 6157 5721 736 226 63 117 chr6 84360098 84360248 -98054994 - Charlie4a DNA MER1_type -1803 158 1 21 36 0 0 chr6 84360365 84360393 -98054849 + AT_rich Low_complexity Low_complexity 1 28 0 384 200 0 0 chr6 84361030 84361115 -98054127 + (TA)n Simple_repeat Simple_repeat 2 86 0 209 212 30 10 chr6 84361320 84361419 -98053823 + (TA)n Simple_repeat Simple_repeat 2 102 0 23 0 0 0 chr6 84362124 84362147 -98053095 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr6 84362179 84362203 -98053039 + AT_rich Low_complexity Low_complexity 1 24 0 2191 106 17 0 chr6 84362304 84362596 -98052646 + AluSx SINE Alu 1 297 -15 1418 66 0 30 chr6 84363112 84363309 -98051933 - AluY SINE Alu -1 310 120 2073 112 0 41 chr6 84363417 84363731 -98051511 + AluSg SINE Alu 2 302 -8 23 0 0 0 chr6 84363863 84363886 -98051356 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 84364054 84364075 -98051167 + AT_rich Low_complexity Low_complexity 1 21 0 4836 112 68 1 chr6 84364075 84364863 -98050379 - L1MA1 LINE L1 0 6302 5462 1980 187 52 0 chr6 84364864 84365211 -98050031 - L1M1 LINE L1 -5568 1997 1633 253 155 1 141 chr6 84365213 84365372 -98049870 - L1M1 LINE L1 -7184 381 16 384 329 135 48 chr6 84365400 84365926 -98049316 + L1M4 LINE L1 4039 4610 -1536 1265 200 4 13 chr6 84366140 84366453 -98048789 - L1MA2 LINE L1 -744 5402 5136 * 5479 124 26 9 chr6 84366443 84367333 -98047909 + L1MA2 LINE L1 5400 6304 0 44 20 0 0 chr6 84367333 84367384 -98047858 + AT_rich Low_complexity Low_complexity 1 51 0 2387 52 13 3 chr6 84369097 84369402 -98045840 - AluY SINE Alu -3 308 1 21 0 0 0 chr6 84369433 84369454 -98045788 + GC_rich Low_complexity Low_complexity 1 21 0 599 313 79 37 chr6 84369671 84370154 -98045088 - MLT1J LTR MaLR -8 503 1 1824 154 16 47 chr6 84370254 84370637 -98044605 + THE1C LTR MaLR 5 375 0 2310 89 0 13 chr6 84371172 84371474 -98043768 - AluSq SINE Alu -15 298 1 415 350 75 33 chr6 84371513 84371942 -98043300 + HERVL LTR ERVL 1478 1924 -3730 964 308 65 24 chr6 84372622 84373113 -98042129 + HERVL LTR ERVL 2346 2856 -2908 372 279 82 16 chr6 84373181 84373303 -98041939 - LTR16C LTR ERVL -2 489 360 2043 197 33 24 chr6 84373647 84374068 -98041174 + MSTB1 LTR MaLR 1 425 -7 3889 211 84 73 chr6 84374091 84374981 -98040261 - MST-int LTR MaLR -486 1165 258 2155 93 0 7 chr6 84374981 84375260 -98039982 - AluSc SINE Alu -32 277 1 3889 211 84 73 chr6 84375260 84375520 -98039722 - MST-int LTR MaLR -1393 258 2 23 0 0 0 chr6 84375538 84375561 -98039681 + AT_rich Low_complexity Low_complexity 1 23 0 532 303 13 0 chr6 84375575 84375742 -98039500 + HERVL LTR ERVL 2927 3094 -1902 1627 313 70 22 chr6 84375860 84377011 -98038231 + HERVL LTR ERVL 3270 4552 -1212 2238 162 28 44 chr6 84377822 84378255 -98036987 + MSTB LTR MaLR 1 426 0 900 227 15 15 chr6 84379184 84379382 -98035860 - MER20 DNA MER1_type -21 198 1 314 286 156 10 chr6 84380303 84380495 -98034747 + L1MC4a LINE L1 5325 5544 -2264 1864 92 0 0 chr6 84380518 84380768 -98034474 - LTR1 LTR ERV1 -46 739 490 1129 145 73 17 chr6 84380828 84381062 -98034180 - LTR1 LTR ERV1 -538 247 1 617 269 113 11 chr6 84381111 84381393 -98033849 + L1MC4a LINE L1 5570 5880 -1928 1255 248 110 62 chr6 84383366 84383983 -98031259 - MER50 LTR ERV1 0 734 88 233 320 140 50 chr6 84384748 84384948 -98030294 - L2 LINE L2 -8 3305 3088 182 255 43 0 chr6 84385732 84385779 -98029463 - MIR3 SINE MIR -14 194 146 1296 196 40 15 chr6 84385798 84386221 -98029021 + MER74C LTR ERVL 13 528 -30 373 299 7 58 chr6 84386246 84386383 -98028859 - MIR SINE MIR -58 150 21 2425 162 27 2 chr6 84386719 84387132 -98028110 + MER95 LTR ERV 9 431 0 574 192 379 0 chr6 84387335 84387512 -98027730 - MIR SINE MIR -11 251 8 804 208 30 65 chr6 84388474 84388705 -98026537 + MER58A DNA MER1_type 2 224 0 189 275 0 0 chr6 84390859 84390899 -98024343 + L3b LINE CR1 1529 1568 -15 445 328 117 43 chr6 84390925 84391388 -98023854 + L2 LINE L2 2808 3304 -9 382 311 41 25 chr6 84391677 84391799 -98023443 - L2 LINE L2 0 3313 3190 233 329 0 47 chr6 84391837 84391922 -98023320 + L2 LINE L2 3190 3270 -2 3602 214 30 60 chr6 84391927 84392882 -98022360 + L1MB3 LINE L1 4133 5115 -1061 881 107 0 0 chr6 84392882 84393004 -98022238 + L1PA7 LINE L1 6021 6182 0 227 50 50 0 chr6 84393004 84393044 -98022198 + (TAAAA)n Simple_repeat Simple_repeat 1 180 0 3602 214 30 60 chr6 84393044 84393098 -98022144 + L1MB3 LINE L1 5115 5169 -1007 21 71 0 0 chr6 84393098 84393140 -98022102 + AT_rich Low_complexity Low_complexity 1 42 0 2038 112 3 17 chr6 84393150 84393437 -98021805 + AluSg SINE Alu 1 311 0 192 36 36 0 chr6 84393437 84393465 -98021777 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3602 214 30 60 chr6 84393465 84393773 -98021469 + L1MB3 LINE L1 5178 5430 -746 6308 108 29 4 chr6 84393778 84394864 -98020378 + L1MA1 LINE L1 5111 6224 -78 2714 98 85 13 chr6 84394864 84395311 -98019931 - LTR19A LTR ERV1 -2 484 6 400 36 54 0 chr6 84395322 84395378 -98019864 - HERVFH19I LTR ERV1 0 7719 7661 2477 154 31 18 chr6 84395378 84395726 -98019516 + L1MB3 LINE L1 5497 5839 -344 2060 212 22 66 chr6 84395726 84396305 -98018937 - MLT2B3 LTR ERVL 0 554 1 2477 154 31 18 chr6 84396305 84396561 -98018681 + L1MB3 LINE L1 5839 6181 -2 2174 74 9 46 chr6 84396761 84397086 -98018156 + AluSp SINE Alu 1 313 0 1495 210 3 14 chr6 84397404 84397699 -98017543 - AluJo SINE Alu -12 300 9 335 309 0 0 chr6 84397904 84398001 -98017241 + MIR SINE MIR 156 252 -10 853 177 0 88 chr6 84398387 84398579 -98016663 + Charlie1b DNA MER1_type 56 230 -293 312 316 84 42 chr6 84399042 84399257 -98015985 - MIR SINE MIR 0 262 39 315 335 18 6 chr6 84399711 84399881 -98015361 - L1ME4a LINE L1 -260 5861 5690 4495 181 32 38 chr6 84400294 84402186 -98013056 - L1MA7 LINE L1 -12 6279 4405 582 152 0 10 chr6 84402192 84402291 -98012951 + MER4A LTR ERV1 1 98 -566 651 153 3 215 chr6 84402291 84402594 -98012648 + MER4A LTR ERV1 261 558 -106 3433 264 22 18 chr6 84402648 84403482 -98011760 - L1M3de LINE L1 -4890 1763 927 238 291 58 23 chr6 84403500 84403586 -98011656 - L1M3de LINE L1 -6287 366 278 819 320 94 27 chr6 84403719 84404091 -98011151 - L1M3de LINE L1 -5637 1016 620 355 348 35 16 chr6 84404120 84404376 -98010866 - L1M3d LINE L1 -5630 261 1 233 327 91 0 chr6 84404619 84404729 -98010513 - L2 LINE L2 -23 3290 3171 2894 210 18 26 chr6 84404863 84405519 -98009723 + MER82 DNA MER2_type 2 652 -1 1039 204 14 36 chr6 84405552 84405772 -98009470 - AluJo SINE Alu -13 299 85 253 0 0 51 chr6 84407324 84407363 -98007879 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 0 0 0 chr6 84407865 84407889 -98007353 + AT_rich Low_complexity Low_complexity 1 24 0 2941 67 3 3 chr6 84408362 84408753 -98006489 - L1PA8 LINE L1 0 6172 5782 225 220 40 0 chr6 84408839 84408889 -98006353 + MIR SINE MIR 91 142 -120 24 0 0 0 chr6 84409455 84409479 -98005763 + AT_rich Low_complexity Low_complexity 1 24 0 578 321 110 12 chr6 84410252 84410720 -98004522 + L1ME4a LINE L1 5376 5891 -230 1051 264 124 54 chr6 84410729 84411245 -98003997 + L1MCb LINE L1 1 552 -5493 2017 227 59 29 chr6 84411378 84412031 -98003211 + L1MCb LINE L1 576 1248 -4849 1739 236 58 36 chr6 84412031 84412645 -98002597 + LTR38 LTR ERV1 1 556 0 2501 58 0 0 chr6 84412693 84413002 -98002240 + AluY SINE Alu 1 309 -2 484 303 84 0 chr6 84413298 84413440 -98001802 + MIR SINE MIR 19 172 -90 322 264 107 25 chr6 84414008 84414129 -98001113 + MIR3 SINE MIR 14 144 -64 221 294 89 10 chr6 84414162 84414277 -98000965 + MIR SINE MIR 8 129 -79 2693 239 59 27 chr6 84416541 84417538 -97997704 - L1M4 LINE L1 -2689 3955 2927 1123 270 138 25 chr6 84417549 84417997 -97997245 - L1M4 LINE L1 -6039 503 5 255 350 102 26 chr6 84418129 84418355 -97996887 - MIR SINE MIR -1 261 19 2726 56 45 0 chr6 84418769 84419127 -97996115 + L1PA7 LINE L1 5781 6154 0 22 35 0 0 chr6 84419220 84419249 -97995993 + AT_rich Low_complexity Low_complexity 1 29 0 214 388 67 33 chr6 84419459 84419699 -97995543 + L2 LINE L2 2934 3181 -91 28 48 0 0 chr6 84419748 84419790 -97995452 + AT_rich Low_complexity Low_complexity 1 42 0 7504 31 1 0 chr6 84420097 84421048 -97994194 + L1PA4 LINE L1 5199 6150 -5 324 200 45 64 chr6 84421055 84421165 -97994077 + L1M4 LINE L1 5222 5329 -817 262 212 108 64 chr6 84421181 84421368 -97993874 + L1P5 LINE L1 5379 5577 -546 24 53 0 0 chr6 84422107 84422145 -97993097 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr6 84422421 84422461 -97992781 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr6 84422574 84422605 -97992637 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 84423057 84423078 -97992164 + AT_rich Low_complexity Low_complexity 1 21 0 2229 169 0 3 chr6 84423308 84423669 -97991573 + MER47A DNA MER2_type 1 360 -6 832 256 118 3 chr6 84424605 84424894 -97990348 - LTR54B LTR ERV1 -1 497 176 600 147 0 0 chr6 84424933 84425028 -97990214 - LTR54B LTR ERV1 -399 99 5 485 168 48 56 chr6 84425443 84425568 -97989674 - MLT1E LTR MaLR 0 593 470 12687 141 29 14 chr6 84425736 84427860 -97987382 - Tigger1 DNA MER2_type -1 2417 262 380 309 154 57 chr6 84429105 84429442 -97985800 - MLT1J LTR MaLR -74 535 177 2407 256 203 39 chr6 84429548 84430517 -97984725 + L1MDa LINE L1 13 1140 -5400 1981 203 8 61 chr6 84430519 84431036 -97984206 + L1 LINE L1 4869 5356 -827 1123 124 40 0 chr6 84431036 84431238 -97984004 + L1MA4 LINE L1 6085 6294 -6 1981 203 8 61 chr6 84431238 84431293 -97983949 + L1 LINE L1 5356 5412 -771 2368 159 15 2 chr6 84431379 84431787 -97983455 + L1MA8 LINE L1 5353 5765 -526 1400 179 23 0 chr6 84431897 84432154 -97983088 + MLT1A1-int LTR MaLR 1473 1735 0 1510 230 34 3 chr6 84432154 84432506 -97982736 + MLT1A1 LTR MaLR 1 363 -2 1480 170 18 23 chr6 84432508 84432885 -97982357 + L1MA8 LINE L1 5762 6228 -63 323 104 30 30 chr6 84432915 84432982 -97982260 + L1MA8 LINE L1 6218 6284 -7 23 0 0 0 chr6 84432994 84433017 -97982225 + AT_rich Low_complexity Low_complexity 1 23 0 699 217 81 13 chr6 84433017 84433252 -97981990 + L1MDa LINE L1 1125 1375 -5165 * 1699 255 95 8 chr6 84433233 84433888 -97981354 + L1MDa LINE L1 2546 3257 -3283 752 355 105 31 chr6 84434509 84434898 -97980344 + L3 LINE CR1 924 1376 -201 2267 100 7 0 chr6 84434898 84435207 -97980035 - AluSq SINE Alu -2 311 1 752 355 105 31 chr6 84435207 84435425 -97979817 + L3 LINE CR1 1376 1576 -1 2286 106 3 0 chr6 84435992 84436304 -97978938 + AluSq SINE Alu 1 313 0 346 323 91 21 chr6 84437418 84437604 -97977638 + MIR SINE MIR 64 262 0 288 194 87 58 chr6 84437749 84437852 -97977390 + Charlie8 DNA MER1_type 43 148 -2269 3518 77 2 2 chr6 84437853 84438334 -97976908 - L1P LINE L1 -1426 4720 4240 1809 70 8 0 chr6 84438334 84438557 -97976685 + L1PA8 LINE L1 5927 6170 -2 23 33 0 0 chr6 84439149 84439179 -97976063 + AT_rich Low_complexity Low_complexity 1 30 0 255 103 0 0 chr6 84439353 84439392 -97975850 + (CA)n Simple_repeat Simple_repeat 2 40 0 1498 191 4 25 chr6 84439652 84439930 -97975312 + AluJo SINE Alu 5 276 -36 300 27 0 0 chr6 84439935 84439972 -97975270 + (CA)n Simple_repeat Simple_repeat 1 37 0 1254 241 117 22 chr6 84440132 84440534 -97974708 + MLT2B1 LTR ERVL 1 440 -80 239 245 0 0 chr6 84440549 84440598 -97974644 + (TG)n Simple_repeat Simple_repeat 2 50 0 239 154 19 19 chr6 84440626 84440678 -97974564 + MLT2B1 LTR ERVL 461 512 -8 2064 127 3 10 chr6 84440869 84441169 -97974073 - AluSx SINE Alu -14 298 1 309 26 0 0 chr6 84441576 84441614 -97973628 + (TG)n Simple_repeat Simple_repeat 2 39 0 188 108 0 27 chr6 84442563 84442600 -97972642 + (TGG)n Simple_repeat Simple_repeat 3 38 0 190 365 24 36 chr6 84443100 84443267 -97971975 + L2 LINE L2 1316 1480 -1834 730 179 129 118 chr6 84444378 84444742 -97970500 + LTR34 LTR ERV1 4 370 -329 * 825 199 42 21 chr6 84444733 84444924 -97970318 + LTR34 LTR ERV1 501 695 -4 302 133 0 33 chr6 84445147 84445207 -97970035 - MLT1K LTR MaLR -19 569 512 23 0 0 0 chr6 84445265 84445288 -97969954 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 84446337 84446358 -97968884 + AT_rich Low_complexity Low_complexity 1 21 0 348 24 0 0 chr6 84448497 84448538 -97966704 + (CA)n Simple_repeat Simple_repeat 2 42 0 316 328 62 57 chr6 84448654 84448831 -97966411 - MIR SINE MIR -70 192 15 1620 251 121 24 chr6 84449568 84450189 -97965053 + L1MC4a LINE L1 6397 7077 -731 875 140 21 119 chr6 84450181 84450416 -97964826 + L1MA10 LINE L1 6122 6333 -1 * 195 184 0 0 chr6 84450450 84450488 -97964754 + GA-rich Low_complexity Low_complexity 3 40 0 2798 244 16 17 chr6 84450491 84451237 -97964005 + L1MC4a LINE L1 7064 7808 0 703 288 34 15 chr6 84451482 84451582 -97963660 + L1MC5 LINE L1 6476 6573 -1241 2501 38 7 0 chr6 84451582 84451874 -97963368 + AluY SINE Alu 2 295 -16 703 288 34 15 chr6 84451874 84452105 -97963137 + L1MC5 LINE L1 6573 6825 -989 1002 229 116 63 chr6 84452162 84452525 -97962717 + LTR41 LTR ERVL 377 758 -15 399 245 117 37 chr6 84452681 84452844 -97962398 - MER46C DNA MER2_type -158 180 5 471 267 73 27 chr6 84453114 84453264 -97961978 - LTR33 LTR ERVL -356 165 9 207 0 0 0 chr6 84453495 84453518 -97961724 + (A)n Simple_repeat Simple_repeat 1 23 0 349 336 47 0 chr6 84453518 84453667 -97961575 - L1MC/D LINE L1 -2224 5584 5429 1993 113 0 34 chr6 84453915 84454230 -97961012 - AluSq SINE Alu 0 307 3 317 292 31 10 chr6 84454349 84454445 -97960797 + L1MC/D LINE L1 5625 5722 -2086 2755 220 14 20 chr6 84454648 84455203 -97960039 - MLT2B3 LTR ERVL -2 552 1 861 275 114 42 chr6 84455227 84455681 -97959561 + L1MC4a LINE L1 5357 5843 -1965 810 231 162 37 chr6 84455707 84456107 -97959135 + L1MD1 LINE L1 4381 4829 -1317 1185 129 249 5 chr6 84456149 84456366 -97958876 - AluSg1 SINE Alu -39 270 1 2636 232 122 21 chr6 84456368 84457624 -97957618 + L1MD1 LINE L1 4849 6227 -15 357 292 104 31 chr6 84457630 84457822 -97957420 + L1MC4a LINE L1 5878 6083 -1725 27 0 0 0 chr6 84458866 84458893 -97956349 + AT_rich Low_complexity Low_complexity 1 27 0 289 275 96 12 chr6 84459151 84459353 -97955889 + L2 LINE L2 2952 3256 -57 217 375 57 23 chr6 84459347 84459523 -97955719 - MIR3 SINE MIR -7 201 20 * 198 301 11 65 chr6 84459833 84459926 -97955316 - L2 LINE L2 -8 3264 3177 207 341 12 0 chr6 84462343 84462425 -97952817 - L2 LINE L2 -3 3269 3187 224 340 10 31 chr6 84462575 84462672 -97952570 - L2 LINE L2 -189 3083 2989 243 159 0 16 chr6 84462785 84462848 -97952394 + L1MB3 LINE L1 6120 6181 -2 770 226 49 0 chr6 84462894 84463058 -97952184 + MER20 DNA MER1_type 45 216 -3 27 49 0 0 chr6 84463299 84463340 -97951902 + AT_rich Low_complexity Low_complexity 1 41 0 1688 139 60 0 chr6 84464150 84464444 -97950798 - AluSx SINE Alu 0 310 1 386 349 43 34 chr6 84464802 84465037 -97950205 - MIR SINE MIR -6 256 20 886 77 0 26 chr6 84465142 84465282 -97949960 - AluSg/x SINE Alu 0 302 166 488 235 118 15 chr6 84465284 84465420 -97949822 - MIR SINE MIR -74 188 39 206 320 103 21 chr6 84466387 84466484 -97948758 + MIR SINE MIR 141 245 -17 490 201 158 61 chr6 84467533 84467697 -97947545 + MER5A DNA MER1_type 10 189 0 313 329 35 21 chr6 84467789 84467932 -97947310 - MER5B DNA MER1_type -32 146 2 186 71 0 0 chr6 84469226 84469254 -97945988 + (A)n Simple_repeat Simple_repeat 1 28 0 195 280 67 13 chr6 84470458 84470533 -97944709 - MIR SINE MIR -33 229 151 218 288 30 0 chr6 84476210 84476276 -97938966 + CT-rich Low_complexity Low_complexity 2 69 0 194 329 40 13 chr6 84477210 84477286 -97937956 + L2 LINE L2 3236 3313 0 476 264 72 79 chr6 84477481 84477746 -97937496 - L2 LINE L2 -11 3302 3040 600 339 52 12 chr6 84480647 84480898 -97934344 - MIR SINE MIR 0 262 2 305 316 50 0 chr6 84483180 84483319 -97931923 + L1MEc LINE L1 786 931 -5465 946 185 119 60 chr6 84483334 84483653 -97931589 + MER47A DNA MER2_type 28 365 -1 394 303 29 18 chr6 84483655 84483846 -97931396 + L1MEc LINE L1 885 1081 -5124 397 293 71 57 chr6 84483903 84484568 -97930674 + L1MEc LINE L1 1114 1829 -4440 412 317 77 32 chr6 84484673 84485011 -97930231 + L1MEc LINE L1 2470 2822 -3393 2437 237 53 6 chr6 84485021 84485727 -97929515 + L1ME1 LINE L1 5343 5993 -173 23 0 0 0 chr6 84485727 84485750 -97929492 + AT_rich Low_complexity Low_complexity 1 23 0 2413 201 24 6 chr6 84485767 84486281 -97928961 + LTR27 LTR ERV1 3 494 -7 1418 238 41 45 chr6 84486462 84487058 -97928184 + HUERS-P2 LTR ERV1 75 601 -2487 4153 164 21 33 chr6 84487091 84488741 -97926501 + LTR27-int LTR ERV1 279 1947 -3270 2160 115 0 32 chr6 84488741 84489055 -97926187 - AluSc SINE Alu -5 304 1 4153 164 21 33 chr6 84489055 84489975 -97925267 + LTR27-int LTR ERV1 1947 4825 -392 665 110 0 0 chr6 84489975 84490066 -97925176 + LTR27-int LTR ERV1 7000 7090 -1 2546 179 26 6 chr6 84490068 84490588 -97924654 + LTR27 LTR ERV1 3 501 0 1730 293 51 22 chr6 84490599 84491285 -97923957 + L1MC4 LINE L1 6217 6922 -1120 1048 199 77 44 chr6 84492327 84492624 -97922618 - MER2 DNA MER2_type 0 345 39 2111 107 0 10 chr6 84493323 84493613 -97921629 - AluSc SINE Alu -14 295 9 1259 233 88 15 chr6 84494076 84494483 -97920759 - HsTC2 DNA Tc2 0 1899 1287 276 222 12 37 chr6 84494537 84494618 -97920624 - HsTC2 DNA Tc2 -1818 80 2 23 0 0 0 chr6 84494729 84494752 -97920490 + AT_rich Low_complexity Low_complexity 1 23 0 616 68 65 34 chr6 84495594 84495921 -97919321 + (CATAT)n Simple_repeat Simple_repeat 1 337 0 252 331 8 16 chr6 84496064 84496188 -97919054 + HAL1b LINE L1 448 570 -778 314 252 60 46 chr6 84496224 84496375 -97918867 + L1ME4a LINE L1 5967 6119 -2 205 333 20 20 chr6 84497392 84497491 -97917751 + L2 LINE L2 3202 3300 -13 352 231 119 91 chr6 84498151 84498294 -97916948 + MLT1J LTR MaLR 273 419 -92 3248 38 2 2 chr6 84499695 84500092 -97915150 + L1PA5 LINE L1 5754 6150 -4 1732 155 0 34 chr6 84502250 84502541 -97912701 + AluSq SINE Alu 1 281 -32 743 259 41 27 chr6 84502627 84502847 -97912395 + MER58A DNA MER1_type 1 223 -1 21 0 0 0 chr6 84504326 84504347 -97910895 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 84504424 84504447 -97910795 + AT_rich Low_complexity Low_complexity 1 23 0 351 257 45 92 chr6 84504687 84504845 -97910397 - MIR3 SINE MIR -21 187 35 230 163 61 20 chr6 84504866 84504915 -97910327 + MIR SINE MIR 104 154 -108 1937 128 4 0 chr6 84505944 84506217 -97909025 + AluSx SINE Alu 22 295 -17 368 168 15 26 chr6 84506260 84506356 -97908886 - MLT1D LTR MaLR 0 505 426 33 0 0 0 chr6 84506702 84506735 -97908507 + AT_rich Low_complexity Low_complexity 1 33 0 1192 223 141 20 chr6 84507069 84507410 -97907832 - MLT1D LTR MaLR -120 385 4 224 139 0 0 chr6 84508668 84508704 -97906538 + L2 LINE L2 3270 3305 -8 2231 129 79 20 chr6 84509529 84509933 -97905309 - MSTA LTR MaLR 0 428 1 587 284 19 0 chr6 84511757 84511919 -97903323 - MER97a DNA MER1_type? -715 179 15 299 333 94 19 chr6 84512059 84512218 -97903024 - LTR16C LTR ERVL -111 380 210 2044 122 3 3 chr6 84512723 84513009 -97902233 - AluSx SINE Alu -18 294 9 837 276 68 49 chr6 84513189 84513555 -97901687 + MLT1F LTR MaLR 1 373 -169 1477 236 103 49 chr6 84513686 84514173 -97901069 + MLT1F LTR MaLR 26 538 -4 195 234 0 78 chr6 84514875 84514939 -97900303 - MIR SINE MIR -26 236 178 4120 134 5 3 chr6 84514969 84515580 -97899662 - LTR9 LTR ERV1 0 612 1 12864 157 19 2 chr6 84515580 84517577 -97897665 - HUERS-P3 LTR ERV1 -1 8918 6889 * 42578 128 23 21 chr6 84517571 84524198 -97891044 - HUERS-P3 LTR ERV1 -2264 6655 15 1459 144 14 9 chr6 84524213 84524435 -97890807 - LTR9 LTR ERV1 0 612 390 566 303 115 13 chr6 84525635 84525869 -97889373 - MIR SINE MIR 0 262 5 25 31 0 0 chr6 84526433 84526465 -97888777 + AT_rich Low_complexity Low_complexity 1 32 0 1182 167 5 20 chr6 84526465 84526663 -97888579 + AluJb SINE Alu 82 276 -36 180 0 0 0 chr6 84526668 84526688 -97888554 + (TAA)n Simple_repeat Simple_repeat 2 21 0 209 385 46 39 chr6 84526950 84527080 -97888162 + L2 LINE L2 3138 3268 -4 244 348 147 31 chr6 84527370 84527847 -97887395 + L2 LINE L2 2187 2718 -596 6592 153 27 8 chr6 84528579 84529785 -97885457 + Tigger3b DNA MER2_type 1 1230 -1 2132 95 0 0 chr6 84529975 84530248 -97884994 - AluSg SINE Alu -37 273 1 379 22 0 0 chr6 84530282 84530328 -97884914 + AluY SINE Alu 84 129 -172 26 30 0 0 chr6 84531630 84531663 -97883579 + AT_rich Low_complexity Low_complexity 1 33 0 2438 66 0 0 chr6 84531827 84532128 -97883114 + AluY SINE Alu 1 301 -10 534 164 57 0 chr6 84533085 84533207 -97882035 - L1MA9 LINE L1 0 6312 6184 189 240 0 40 chr6 84533706 84533756 -97881486 - L3 LINE CR1 -326 1251 1204 226 127 0 36 chr6 84535431 84535486 -97879756 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 1813 98 18 4 chr6 84536256 84536533 -97878709 + L1P LINE L1 1619 1899 -4247 539 277 238 0 chr6 84536954 84537160 -97878082 - MIR SINE MIR 0 262 8 1521 214 108 123 chr6 84538503 84539478 -97875764 - LTR1B LTR ERV1 0 1020 1 2499 123 21 102 chr6 84540011 84540539 -97874703 - MER4B LTR ERV1 0 610 126 2069 87 17 21 chr6 84540539 84540828 -97874414 - AluSx SINE Alu -11 301 14 207 0 0 0 chr6 84540828 84540851 -97874391 + (T)n Simple_repeat Simple_repeat 1 23 0 450 71 43 0 chr6 84540851 84540921 -97874321 - MER41A LTR ERV1 -88 466 394 * 758 130 23 15 chr6 84540916 84541047 -97874195 - MER4B LTR ERV1 -478 132 1 302 323 142 7 chr6 84541171 84541326 -97873916 - MIR3 SINE MIR -13 195 20 2955 78 16 3 chr6 84541562 84541946 -97873296 - MLT2A2 LTR ERVL -64 389 1 10039 72 16 0 chr6 84541952 84543242 -97872000 - HERVL-A2-A2 LTR ERVL -7 5647 4337 * 14177 84 15 4 chr6 84543235 84545101 -97870141 - HERVL-A2-A2 LTR ERVL -1634 4020 2135 * 15016 87 1 2 chr6 84545092 84547068 -97868174 - HERVL-A2-A2 LTR ERVL -3680 1974 1 3181 107 18 5 chr6 84547068 84547515 -97867727 - MLT2A2 LTR ERVL 0 453 1 22 70 0 0 chr6 84547728 84547771 -97867471 + AT_rich Low_complexity Low_complexity 1 43 0 30 0 0 0 chr6 84547940 84547970 -97867272 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr6 84548824 84548856 -97866386 + AT_rich Low_complexity Low_complexity 1 32 0 377 297 79 24 chr6 84549309 84549474 -97865768 - MIR3 SINE MIR -1 207 34 23 0 0 0 chr6 84549481 84549504 -97865738 + AT_rich Low_complexity Low_complexity 1 23 0 315 244 209 4 chr6 84549789 84550014 -97865228 - LTR50 LTR ERVL -26 769 499 475 250 117 21 chr6 84550104 84550292 -97864950 - LTR50 LTR ERVL -576 219 14 1495 193 10 39 chr6 84550497 84550803 -97864439 + AluJo SINE Alu 3 299 -13 3150 236 58 24 chr6 84550822 84552124 -97863118 + L1ME1 LINE L1 4810 6158 -8 464 296 70 44 chr6 84552264 84552590 -97862652 - L1ME LINE L1 -383 5787 5435 1602 185 29 52 chr6 84552590 84552973 -97862269 - MLT1A2 LTR MaLR 0 374 1 464 296 70 44 chr6 84552973 84553232 -97862010 - L1ME LINE L1 -735 5435 5184 34 0 0 0 chr6 84553265 84553299 -97861943 + AT_rich Low_complexity Low_complexity 1 34 0 456 284 75 0 chr6 84553494 84553628 -97861614 + MLT1L LTR MaLR 425 568 -47 429 128 47 35 chr6 84553725 84553811 -97861431 - L1MA9 LINE L1 -61 6251 6165 1042 181 29 0 chr6 84553811 84554016 -97861226 + L1MA9 LINE L1 5941 6151 -161 330 80 0 0 chr6 84554016 84554066 -97861176 + (CA)n Simple_repeat Simple_repeat 1 50 0 8465 114 29 7 chr6 84554247 84554689 -97860553 + HSMAR1 DNA Mariner 1 432 -855 1776 122 6 110 chr6 84554689 84555034 -97860208 + AluSp SINE Alu 1 309 -4 8465 114 29 7 chr6 84555034 84555850 -97859392 + HSMAR1 DNA Mariner 432 1286 -1 24 0 0 0 chr6 84555875 84555899 -97859343 + AT_rich Low_complexity Low_complexity 1 24 0 843 325 99 29 chr6 84557623 84558007 -97857235 + LTR16C LTR ERVL 81 491 0 314 227 15 0 chr6 84558105 84558171 -97857071 + L2 LINE L2 3247 3313 0 236 95 48 143 chr6 84558242 84558276 -97856966 - MLT2B1 LTR ERVL 0 520 484 267 31 0 0 chr6 84558276 84558308 -97856934 + (TA)n Simple_repeat Simple_repeat 1 32 0 237 33 0 0 chr6 84558307 84558337 -97856905 + (CA)n Simple_repeat Simple_repeat 2 31 0 * 236 95 48 143 chr6 84558308 84558365 -97856877 - MLT2B1 LTR ERVL -36 484 464 563 98 61 0 chr6 84558365 84558528 -97856714 + (TA)n Simple_repeat Simple_repeat 1 173 0 212 376 0 0 chr6 84558985 84559070 -97856172 + L2 LINE L2 3229 3313 0 266 231 75 127 chr6 84559146 84559280 -97855962 - L2 LINE L2 0 3313 3187 1191 226 4 31 chr6 84559373 84559630 -97855612 + MLT1A1 LTR MaLR 116 365 0 198 103 0 0 chr6 84559650 84559679 -97855563 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 847 299 85 52 chr6 84559679 84560398 -97854844 + L2 LINE L2 1985 2727 -587 2322 63 0 0 chr6 84560478 84560777 -97854465 + L1P LINE L1 1845 2143 -4003 336 320 14 55 chr6 84560975 84561194 -97854048 - L2 LINE L2 0 3313 3104 812 68 0 0 chr6 84561225 84561328 -97853914 + L1PA5 LINE L1 6045 6147 -7 26 64 0 0 chr6 84561328 84561375 -97853867 + AT_rich Low_complexity Low_complexity 1 47 0 43 108 0 0 chr6 84561518 84561694 -97853548 + AT_rich Low_complexity Low_complexity 1 176 0 28 109 0 0 chr6 84562176 84562295 -97852947 + AT_rich Low_complexity Low_complexity 1 119 0 187 346 24 24 chr6 84562301 84562428 -97852814 - L2 LINE L2 -615 2699 2573 28 29 0 0 chr6 84562828 84562863 -97852379 + AT_rich Low_complexity Low_complexity 1 35 0 441 307 80 0 chr6 84564110 84564247 -97850995 - MIR3 SINE MIR -7 201 54 431 345 171 29 chr6 84565761 84566146 -97849096 + MLT1K LTR MaLR 126 565 -23 23 0 0 0 chr6 84566830 84566853 -97848389 + AT_rich Low_complexity Low_complexity 1 23 0 395 68 17 0 chr6 84567064 84567123 -97848119 + (TC)n Simple_repeat Simple_repeat 1 60 0 1481 258 106 42 chr6 84567367 84567565 -97847677 - L2 LINE L2 -2 3311 3127 1742 178 35 68 chr6 84567565 84567991 -97847251 + MLT2D LTR ERVL 1 412 -2 1481 258 106 42 chr6 84567991 84568041 -97847201 - L2 LINE L2 -186 3127 3082 2144 50 0 0 chr6 84568041 84568303 -97846939 - L1PA3 LINE L1 0 6155 5894 1481 258 106 42 chr6 84568303 84569017 -97846225 - L2 LINE L2 -231 3082 2262 760 290 28 27 chr6 84569052 84569479 -97845763 + MER20B DNA MER1_type 7 499 -284 1893 105 40 4 chr6 84569828 84570104 -97845138 - AluSx SINE Alu -16 296 11 619 231 87 26 chr6 84570417 84570646 -97844596 + MER20B DNA MER1_type 536 778 -5 1521 212 46 39 chr6 84570669 84571080 -97844162 - MLT2D LTR ERVL 0 414 1 2812 132 16 19 chr6 84571571 84572086 -97843156 - L1MA8 LINE L1 -19 7293 6781 12788 34 10 0 chr6 84572114 84574437 -97840805 - L1PA4 LINE L1 -3 6152 3813 1123 128 41 15 chr6 84574437 84574632 -97840610 - L1MA8 LINE L1 -561 6751 6552 571 128 128 0 chr6 84574611 84574705 -97840537 - L1MA8 LINE L1 -2526 4641 4536 * 1038 278 47 24 chr6 84574727 84575238 -97840004 - L1MA8 LINE L1 -4286 2882 2360 1114 29 0 7 chr6 84575253 84575391 -97839851 - L1PA5 LINE L1 -3 6151 6015 1107 60 24 42 chr6 84575392 84575558 -97839684 + L1PA4 LINE L1 5886 6048 -107 * 1251 292 32 11 chr6 84575543 84576256 -97838986 - L1MA8 LINE L1 -4728 2370 1619 935 240 119 50 chr6 84576590 84576927 -97838315 + MLT1A1 LTR MaLR 6 365 0 29 60 0 0 chr6 84576977 84577027 -97838215 + AT_rich Low_complexity Low_complexity 1 50 0 38 61 0 0 chr6 84577151 84577217 -97838025 + AT_rich Low_complexity Low_complexity 1 66 0 569 271 106 59 chr6 84577758 84578031 -97837211 + MLT1G LTR MaLR 1 286 -304 233 247 156 0 chr6 84578104 84578181 -97837061 + MLT1G1 LTR MaLR 507 595 0 501 306 128 9 chr6 84579429 84579648 -97835594 + MIR SINE MIR 18 262 0 29 0 0 0 chr6 84579857 84579886 -97835356 + AT_rich Low_complexity Low_complexity 1 29 0 210 274 167 12 chr6 84584091 84584175 -97831067 - L2 LINE L2 -626 2688 2592 294 316 58 7 chr6 84584204 84584359 -97830883 - L2 LINE L2 -1261 2053 1891 183 346 56 9 chr6 84584389 84584496 -97830746 - L2 LINE L2 -1605 1709 1598 702 223 60 99 chr6 84585876 84586109 -97829133 - MER58A DNA MER1_type 0 224 1 410 243 45 18 chr6 84586176 84586287 -97828955 + L2 LINE L2 3200 3313 0 348 257 0 14 chr6 84586403 84586477 -97828765 - MER2 DNA MER2_type 0 345 273 2489 14 44 3 chr6 84586488 84586783 -97828459 + AluYa5 SINE Alu 5 311 0 3523 49 20 7 chr6 84587155 84587606 -97827636 - L1PA7 LINE L1 -1 6153 5697 1444 149 91 77 chr6 84590266 84590708 -97824534 - LTR7 LTR ERV1 -2 448 1 29306 61 3 4 chr6 84590708 84594995 -97820247 - HERVH LTR ERV1 0 7713 3492 884 122 20 0 chr6 84594985 84595133 -97820109 - HERVH LTR ERV1 -4423 3290 3140 * 14919 86 14 36 chr6 84595112 84598236 -97817006 - HERVH LTR ERV1 -4718 2995 1 1361 161 91 77 chr6 84598238 84598680 -97816562 - LTR7 LTR ERV1 -2 448 1 740 194 102 32 chr6 84598746 84598932 -97816310 - MIR SINE MIR -57 205 7 312 137 0 0 chr6 84599096 84599147 -97816095 + (TG)n Simple_repeat Simple_repeat 2 52 0 344 327 45 74 chr6 84599312 84599514 -97815728 + MIR SINE MIR 62 257 -5 186 376 116 22 chr6 84599780 84600150 -97815092 - L2 LINE L2 -47 3225 2821 230 342 191 13 chr6 84600348 84600579 -97814663 + L3 LINE CR1 1077 1348 -229 221 313 61 10 chr6 84600881 84600980 -97814262 + MIR SINE MIR 103 206 -56 25 31 0 0 chr6 84601384 84601416 -97813826 + AT_rich Low_complexity Low_complexity 1 32 0 796 261 115 0 chr6 84601933 84602159 -97813083 - MIR SINE MIR -2 260 9 757 288 165 23 chr6 84602181 84602618 -97812624 - L3 LINE CR1 -5 1572 1074 332 328 67 22 chr6 84602628 84602849 -97812393 + MIR SINE MIR 8 230 -32 * 401 320 84 33 chr6 84602833 84603167 -97812075 + L2 LINE L2 2916 3266 -47 21 0 0 0 chr6 84603167 84603188 -97812054 + AT_rich Low_complexity Low_complexity 1 21 0 2236 112 3 10 chr6 84603295 84603600 -97811642 - AluSx SINE Alu -9 303 1 23 0 0 0 chr6 84604616 84604639 -97810603 + AT_rich Low_complexity Low_complexity 1 23 0 2209 107 0 0 chr6 84604786 84605075 -97810167 - AluSg SINE Alu -17 293 5 216 67 0 0 chr6 84605489 84605519 -97809723 + (TAG)n Simple_repeat Simple_repeat 3 32 0 437 340 87 15 chr6 84605522 84605728 -97809514 - MIR SINE MIR -1 261 41 283 297 0 0 chr6 84606556 84606620 -97808622 + MER7A DNA MER2_type 1 64 -284 * 1824 201 0 9 chr6 84606611 84606945 -97808297 + MER7A DNA MER2_type 16 344 -2 22 35 0 0 chr6 84607136 84607165 -97808077 + AT_rich Low_complexity Low_complexity 1 29 0 371 249 119 20 chr6 84607189 84607390 -97807852 - L1ME3A LINE L1 -285 5885 5665 360 311 48 0 chr6 84607419 84607647 -97807595 - L1ME3A LINE L1 -786 5360 5122 23 0 0 0 chr6 84607777 84607800 -97807442 + AT_rich Low_complexity Low_complexity 1 23 0 279 178 55 55 chr6 84610687 84610760 -97804482 - L2 LINE L2 0 3313 3241 4279 187 62 66 chr6 84611271 84612332 -97802910 - L1MA9 LINE L1 0 6312 5256 * 6477 116 45 4 chr6 84612330 84613477 -97801765 - L1MA1 LINE L1 -7 6295 5102 1979 154 14 0 chr6 84613479 84613836 -97801406 - L1MA9 LINE L1 -849 5297 4936 1980 184 88 0 chr6 84613954 84614341 -97800901 + MSTB LTR MaLR 1 421 -5 203 213 0 16 chr6 84614437 84614498 -97800744 + CT-rich Low_complexity Low_complexity 1 60 0 445 325 41 15 chr6 84614671 84614939 -97800303 - L1ME LINE L1 -327 5794 5520 21 0 0 0 chr6 84615010 84615031 -97800211 + AT_rich Low_complexity Low_complexity 1 21 0 2457 253 112 16 chr6 84615480 84616183 -97799059 - MER21B LTR ERV1 -81 782 12 344 236 136 7 chr6 84617134 84617274 -97797968 - L1ME4a LINE L1 -5 6116 5959 314 295 170 5 chr6 84617276 84617500 -97797742 - L1ME4a LINE L1 -202 5919 5659 231 350 137 8 chr6 84618336 84618453 -97796789 + MER5B DNA MER1_type 46 177 -1 192 376 52 62 chr6 84619310 84619520 -97795722 - L2 LINE L2 -27 3245 3038 273 305 62 79 chr6 84619558 84619779 -97795463 - L2 LINE L2 -343 2971 2755 449 281 7 15 chr6 84619779 84619914 -97795328 + MER94 DNA DNA 1 134 0 273 305 62 79 chr6 84619914 84619984 -97795258 - L2 LINE L2 -559 2755 2685 497 356 82 23 chr6 84619999 84620536 -97794706 + L2 LINE L2 2702 3270 -2 3599 122 4 12 chr6 84622151 84622660 -97792582 - LTR9 LTR ERV1 -107 505 1 2340 279 49 33 chr6 84622660 84623040 -97792202 + L2 LINE L2 1645 2017 -1297 3839 142 31 50 chr6 84623040 84623744 -97791498 + LTR8 LTR ERV1 1 691 0 2340 279 49 33 chr6 84623744 84624178 -97791064 + L2 LINE L2 2017 2472 -842 1348 203 4 23 chr6 84624179 84624471 -97790771 - AluJb SINE Alu 0 312 28 383 295 0 0 chr6 84624473 84624568 -97790674 + L2 LINE L2 2465 2559 -755 437 165 247 0 chr6 84624598 84624695 -97790547 + FRAM SINE Alu 34 154 -22 602 225 17 21 chr6 84624827 84624976 -97790266 - MLT1F1 LTR MaLR -8 559 396 1107 302 88 20 chr6 84624977 84625681 -97789561 + L2 LINE L2 2548 3295 -18 210 356 126 0 chr6 84625778 84625865 -97789377 - MIR SINE MIR -156 106 9 492 315 22 28 chr6 84625882 84626063 -97789179 + MIR SINE MIR 16 195 -67 240 322 102 35 chr6 84626380 84626635 -97788607 + L2 LINE L2 2183 2454 -860 28971 131 36 55 chr6 84626765 84633032 -97782210 + L1PA3 LINE L1 12 6152 -3 226 204 0 57 chr6 84633660 84633748 -97781494 + A-rich Low_complexity Low_complexity 3 85 0 297 313 71 45 chr6 84635828 84636026 -97779216 - L2 LINE L2 -980 2334 2132 21 36 0 0 chr6 84638135 84638163 -97777079 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 84638939 84638969 -97776273 + AT_rich Low_complexity Low_complexity 1 30 0 2394 194 42 62 chr6 84639715 84640390 -97774852 - MER67B LTR ERV1 0 661 1 1042 206 10 34 chr6 84640546 84640755 -97774487 + MER20 DNA MER1_type 1 204 -15 2327 147 69 24 chr6 84640756 84641220 -97774022 + MER31A LTR ERV1 1 485 0 2144 104 4 7 chr6 84641607 84641887 -97773355 - AluSx SINE Alu -33 279 1 237 211 0 0 chr6 84643004 84643056 -97772186 + (TA)n Simple_repeat Simple_repeat 1 52 0 223 304 58 36 chr6 84643232 84643370 -97771872 - L2 LINE L2 0 3313 3173 342 0 0 0 chr6 84644392 84644430 -97770812 + (TG)n Simple_repeat Simple_repeat 2 39 0 2237 110 21 0 chr6 84645466 84645794 -97769448 + L1PA8A LINE L1 5795 6129 -2 1900 170 3 0 chr6 84645807 84646142 -97769100 + AluJb SINE Alu 1 336 0 931 315 48 21 chr6 84646333 84646824 -97768418 + MLT1H LTR MaLR 24 527 -22 2476 246 54 37 chr6 84647015 84647379 -97767863 + L1ME1 LINE L1 4534 4890 -1276 315 0 0 0 chr6 84647379 84647414 -97767828 + (TG)n Simple_repeat Simple_repeat 2 36 0 2476 246 54 37 chr6 84647414 84648527 -97766715 + L1ME1 LINE L1 4890 6038 -128 2556 219 75 29 chr6 84648624 84649282 -97765960 + MER76 LTR ERV 1 688 0 687 239 89 38 chr6 84649411 84649624 -97765618 + MLT1H LTR MaLR 4 227 -322 31 58 0 0 chr6 84650441 84650493 -97764749 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr6 84651536 84651566 -97763676 + AT_rich Low_complexity Low_complexity 1 30 0 248 320 88 32 chr6 84651587 84651712 -97763530 + L2 LINE L2 3137 3268 -4 263 381 10 0 chr6 84652054 84652151 -97763091 + L2 LINE L2 3207 3304 -9 195 365 70 9 chr6 84652255 84652370 -97762872 + L2 LINE L2 3151 3272 0 1602 155 74 0 chr6 84653943 84654227 -97761015 - AluJb SINE Alu -7 305 1 23 0 0 0 chr6 84654807 84654830 -97760412 + AT_rich Low_complexity Low_complexity 1 23 0 276 366 12 25 chr6 84654978 84655139 -97760103 + L2 LINE L2 3155 3313 0 358 306 221 36 chr6 84656506 84656813 -97758429 - MLT1H LTR MaLR -185 364 1 953 254 5 10 chr6 84658739 84658944 -97756298 - MER63A DNA MER1_type -5 205 2 22 35 0 0 chr6 84660137 84660166 -97755076 + AT_rich Low_complexity Low_complexity 1 29 0 218 368 0 0 chr6 84660166 84660261 -97754981 - MIR3 SINE MIR -3 205 111 501 179 0 0 chr6 84660435 84660513 -97754729 - FRAM/FAM SINE Alu -93 83 6 239 214 0 29 chr6 84660519 84660589 -97754653 - L1M4 LINE L1 -3212 2934 2867 374 287 90 75 chr6 84660619 84660953 -97754289 - L1M4 LINE L1 -3551 2595 2257 26 50 0 0 chr6 84661178 84661218 -97754024 + AT_rich Low_complexity Low_complexity 1 40 0 589 336 94 55 chr6 84661414 84661619 -97753623 - HAL1 LINE L1 -920 1587 1392 1804 164 24 0 chr6 84661619 84661906 -97753336 - AluSx SINE Alu -16 296 3 589 336 94 55 chr6 84661906 84662433 -97752809 - HAL1 LINE L1 -1115 1392 826 351 0 0 0 chr6 84662793 84662832 -97752410 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2123 114 0 7 chr6 84664653 84664951 -97750291 + AluSx SINE Alu 1 296 -16 245 0 0 70 chr6 84665195 84665238 -97750004 - L1PA6 LINE L1 0 6154 6115 183 245 0 38 chr6 84665412 84665465 -97749777 + L2 LINE L2 3261 3311 -2 1989 131 44 33 chr6 84666724 84667084 -97748158 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr6 84667429 84667451 -97747791 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr6 84667710 84667746 -97747496 + AT_rich Low_complexity Low_complexity 1 36 0 281 291 39 47 chr6 84668097 84668173 -97747069 + MIR3 SINE MIR 48 124 -84 222 37 0 0 chr6 84668173 84668200 -97747042 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 281 291 39 47 chr6 84668200 84668250 -97746992 + MIR3 SINE MIR 124 173 -35 1402 129 173 12 chr6 84669038 84669293 -97745949 + AluSc SINE Alu 1 296 -3 582 205 34 0 chr6 84669352 84669469 -97745773 - FLAM_C SINE Alu -20 123 3 284 264 0 11 chr6 84669916 84670003 -97745239 + CT-rich Low_complexity Low_complexity 1 86 0 387 0 0 0 chr6 84670005 84670048 -97745194 + (CA)n Simple_repeat Simple_repeat 2 44 0 2054 143 140 5 chr6 84671423 84671815 -97743427 + MER31A LTR ERV1 5 449 -36 256 135 39 0 chr6 84671803 84671855 -97743387 + MADE1 DNA Mariner 27 80 0 * 2353 78 0 0 chr6 84671868 84672161 -97743081 + AluY SINE Alu 1 293 -18 33 25 0 0 chr6 84672551 84672591 -97742651 + AT_rich Low_complexity Low_complexity 1 40 0 269 250 0 0 chr6 84673778 84673834 -97741408 - L2 LINE L2 -3 3269 3214 188 149 21 0 chr6 84673999 84674046 -97741196 + (TA)n Simple_repeat Simple_repeat 1 48 0 1506 136 30 0 chr6 84674046 84674282 -97740960 - L1PB3 LINE L1 -7 6147 5905 315 240 48 19 chr6 84674283 84674387 -97740855 + L1ME LINE L1 63 169 -5901 1118 139 0 0 chr6 84674460 84674625 -97740617 + AluSg/x SINE Alu 137 301 -11 422 269 9 0 chr6 84674830 84674938 -97740304 + Tigger5 DNA MER2_type 1 109 -2214 1047 184 10 0 chr6 84674957 84675158 -97740084 + Tigger5 DNA MER2_type 2121 2323 0 293 252 0 70 chr6 84675329 84675444 -97739798 + L1P LINE L1 3501 3607 -2539 197 284 161 72 chr6 84675499 84675735 -97739507 - L2 LINE L2 -188 3084 2828 25 0 0 0 chr6 84676613 84676638 -97738604 + AT_rich Low_complexity Low_complexity 1 25 0 236 292 0 15 chr6 84676820 84676885 -97738357 + CT-rich Low_complexity Low_complexity 3 66 0 1710 194 0 25 chr6 84677268 84677588 -97737654 + AluSx SINE Alu 1 312 0 587 191 121 35 chr6 84677823 84678022 -97737220 - L1MEc LINE L1 -4494 1902 1687 721 242 16 16 chr6 84678028 84678210 -97737032 - L1MEc LINE L1 -5904 492 311 1765 224 44 46 chr6 84678389 84678844 -97736398 + LTR32 LTR ERVL 15 468 -3 752 264 50 58 chr6 84678904 84679162 -97736080 + MLT1C LTR MaLR 1 256 -134 1156 220 161 68 chr6 84679183 84679895 -97735347 + LTR48B LTR ERV1 1 786 -1 844 214 33 9 chr6 84679898 84680108 -97735134 + MLT1C LTR MaLR 251 465 -2 258 377 27 20 chr6 84680225 84680371 -97734871 - L2 LINE L2 -189 3083 2937 1517 204 127 8 chr6 84680868 84681255 -97733987 - L1ME3 LINE L1 -2 6160 5728 4614 169 29 14 chr6 84681270 84681952 -97733290 - L1MB3 LINE L1 -9 6174 5475 237 65 0 0 chr6 84681952 84681983 -97733259 + (TA)n Simple_repeat Simple_repeat 2 32 0 4614 169 29 14 chr6 84681983 84682175 -97733067 - L1MB3 LINE L1 -708 5475 5287 2528 102 16 14 chr6 84682245 84682608 -97732634 + THE1B LTR MaLR 1 364 0 908 230 5 25 chr6 84683123 84683323 -97731919 - MER20 DNA MER1_type -1 218 23 2393 150 7 48 chr6 84684266 84684705 -97730537 - MSTC LTR MaLR 0 428 8 268 342 88 79 chr6 84686469 84687164 -97728078 + L2 LINE L2 1211 1917 -1397 1550 115 18 0 chr6 84687164 84687390 -97727852 - MER30 DNA MER1_type 0 230 1 268 342 88 79 chr6 84687390 84687580 -97727662 + L2 LINE L2 1917 2104 -1210 491 271 63 56 chr6 84687651 84687935 -97727307 - L2 LINE L2 -876 2438 2153 412 307 49 49 chr6 84688007 84688251 -97726991 - L2 LINE L2 -1089 2225 1982 220 235 20 0 chr6 84688251 84688302 -97726940 + GA-rich Low_complexity Low_complexity 3 54 0 862 227 93 44 chr6 84688362 84688683 -97726559 + MLT1C LTR MaLR 131 467 0 6982 66 3 0 chr6 84688875 84690223 -97725019 - L1PA7 LINE L1 -5 6149 4798 283 274 118 30 chr6 84690638 84690967 -97724275 - L1ME4a LINE L1 -5 6116 5759 1919 140 0 4 chr6 84690973 84691252 -97723990 - AluSx SINE Alu -18 294 17 237 151 189 0 chr6 84691925 84691978 -97723264 + MIR SINE MIR 83 145 -63 701 214 0 0 chr6 84692053 84692165 -97723077 + FLAM_C SINE Alu 10 121 -22 467 17 17 0 chr6 84692170 84692230 -97723012 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 24 32 0 0 chr6 84693756 84693787 -97721455 + AT_rich Low_complexity Low_complexity 1 31 0 603 230 14 14 chr6 84694418 84694566 -97720676 + MIR SINE MIR 75 222 -40 432 252 36 9 chr6 84694707 84694818 -97720424 + MLT1L LTR MaLR 418 531 -84 3989 130 5 25 chr6 84695110 84695758 -97719484 + MER41B LTR ERV1 1 635 0 250 258 0 15 chr6 84698347 84698413 -97716829 + MIR SINE MIR 178 242 -20 24 67 0 0 chr6 84698597 84698642 -97716600 + AT_rich Low_complexity Low_complexity 1 45 0 202 416 23 17 chr6 84698782 84698955 -97716287 - MER5A DNA MER1_type 0 189 16 286 213 12 38 chr6 84698959 84699039 -97716203 - MIR SINE MIR -109 153 76 1417 159 4 20 chr6 84699139 84699391 -97715851 + AluSx SINE Alu 1 248 -64 16477 118 9 11 chr6 84699760 84702582 -97712660 + L1PA8A LINE L1 2801 5608 -523 4622 164 68 6 chr6 84752885 84753880 -97661362 - L1MA9 LINE L1 0 6312 5256 * 6230 112 43 5 chr6 84753878 84755027 -97660215 - L1MA1 LINE L1 -7 6295 5102 1864 157 14 0 chr6 84755029 84755386 -97659856 - L1MA9 LINE L1 -849 5297 4936 1843 184 88 0 chr6 84755504 84755891 -97659351 + MSTB LTR MaLR 1 421 -5 203 213 0 16 chr6 84755987 84756048 -97659194 + CT-rich Low_complexity Low_complexity 1 60 0 379 325 41 15 chr6 84756221 84756489 -97658753 - L1ME LINE L1 -327 5794 5520 21 0 0 0 chr6 84756560 84756581 -97658661 + AT_rich Low_complexity Low_complexity 1 21 0 2192 253 109 16 chr6 84757045 84757732 -97657510 - MER21B LTR ERV1 -101 762 12 344 236 136 7 chr6 84758683 84758823 -97656419 - L1ME4a LINE L1 -5 6116 5959 263 295 170 5 chr6 84758825 84759049 -97656193 - L1ME4a LINE L1 -202 5919 5659 228 350 137 8 chr6 84759885 84760002 -97655240 + MER5B DNA MER1_type 46 177 -1 197 376 52 62 chr6 84760859 84761069 -97654173 - L2 LINE L2 -27 3245 3038 284 305 62 79 chr6 84761107 84761328 -97653914 - L2 LINE L2 -343 2971 2755 443 281 7 15 chr6 84761328 84761463 -97653779 + MER94 DNA DNA 1 134 0 284 305 62 79 chr6 84761463 84761533 -97653709 - L2 LINE L2 -559 2755 2685 517 356 82 23 chr6 84761547 84762084 -97653158 + L2 LINE L2 2702 3270 -2 478 184 48 0 chr6 84763720 84763845 -97651397 - MER53 DNA DNA -30 159 29 23 0 0 0 chr6 84763865 84763888 -97651354 + AT_rich Low_complexity Low_complexity 1 23 0 41560 43 2 3 chr6 84763888 84768796 -97646446 - L1PA4 LINE L1 -3 6152 1253 2716 16 0 25 chr6 84768796 84769115 -97646127 - AluYa5 SINE Alu 0 311 1 41560 43 2 3 chr6 84769115 84770365 -97644877 - L1PA4 LINE L1 -4902 1253 3 256 231 0 0 chr6 84770554 84770606 -97644636 + GA-rich Low_complexity Low_complexity 1 52 0 36 0 0 0 chr6 84770768 84770804 -97644438 + AT_rich Low_complexity Low_complexity 1 36 0 252 218 36 18 chr6 84771175 84771285 -97643957 + (TA)n Simple_repeat Simple_repeat 2 113 0 506 376 76 44 chr6 84772288 84772805 -97642437 + L2 LINE L2 2742 3272 0 424 215 13 0 chr6 84773446 84773525 -97641717 - MER5A DNA MER1_type -100 89 10 279 274 102 57 chr6 84773577 84773734 -97641508 - L2 LINE L2 -1619 1695 1532 841 186 21 52 chr6 84774124 84774317 -97640925 + MER5A DNA MER1_type 3 189 0 218 242 15 30 chr6 84774603 84774669 -97640573 + (CAA)n Simple_repeat Simple_repeat 1 65 0 3710 157 30 22 chr6 84775577 84776189 -97639053 + MER39 LTR ERV1 6 611 -96 2249 179 47 2 chr6 84776189 84776597 -97638645 + MSTB LTR MaLR 1 426 0 8436 171 48 12 chr6 84776597 84778190 -97637052 + MSTB-int LTR MaLR 1 1651 0 2212 192 34 2 chr6 84778192 84778603 -97636639 + MSTB LTR MaLR 3 426 0 3710 157 30 22 chr6 84778603 84778680 -97636562 + MER39 LTR ERV1 611 705 -2 2406 77 0 0 chr6 84779887 84780173 -97635069 + AluSc SINE Alu 21 306 -3 29 70 0 0 chr6 84780189 84780246 -97634996 + AT_rich Low_complexity Low_complexity 1 57 0 723 263 17 0 chr6 84780304 84780479 -97634763 + MER5B DNA MER1_type 1 178 0 495 110 12 0 chr6 84780624 84780706 -97634536 - L1MA9 LINE L1 -323 5977 5895 * 1028 154 47 135 chr6 84780705 84781068 -97634174 + L1MA9 LINE L1 5980 6310 -2 2450 76 0 0 chr6 84782315 84782616 -97632626 + AluY SINE Alu 1 301 -10 353 311 88 44 chr6 84782696 84782924 -97632318 + MIR SINE MIR 19 256 -6 1685 89 0 0 chr6 84783565 84783802 -97631440 - L1PA13 LINE L1 -213 5950 5714 357 74 19 0 chr6 84783798 84783852 -97631390 + L1PA13 LINE L1 6061 6115 -48 * 414 150 39 20 chr6 84784084 84784197 -97631045 - LTR54B LTR ERV1 -5 505 391 539 374 81 29 chr6 84785668 84785978 -97629264 - L2 LINE L2 -4 3268 2943 291 154 19 0 chr6 84786007 84786059 -97629183 - MER5B DNA MER1_type -1 177 125 386 382 10 10 chr6 84786070 84786274 -97628968 - L2 LINE L2 -566 2748 2545 26 30 0 0 chr6 84786364 84786397 -97628845 + AT_rich Low_complexity Low_complexity 1 33 0 306 109 109 0 chr6 84786399 84786454 -97628788 + L1PA8A LINE L1 5889 5949 -182 8159 55 9 0 chr6 84786573 84787530 -97627712 - LTR5 LTR ERVK -3 966 1 432 63 11 168 chr6 84787530 84787625 -97627617 - SVA Other Other -450 936 857 13838 16 2 0 chr6 84787625 84789272 -97625970 - HERVK LTR ERVK -95 7148 5533 46699 12 6 0 chr6 84789529 84795032 -97620210 - HERVK LTR ERVK -1710 5533 1 8145 56 9 0 chr6 84795035 84795992 -97619250 - LTR5 LTR ERVK -3 966 1 307 280 300 16 chr6 84798210 84798616 -97616626 - L2 LINE L2 -153 3119 2575 873 86 86 0 chr6 84798858 84798986 -97616256 - MER85 DNA T2_type 0 139 1 576 250 47 14 chr6 84799007 84799155 -97616087 - MER5B DNA MER1_type -22 156 4 206 0 0 65 chr6 84800231 84800262 -97614980 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 39717 41 22 3 chr6 84800262 84806287 -97608955 - L1PA3 LINE L1 -10 6145 1 294 298 13 82 chr6 84807200 84807358 -97607884 - L2 LINE L2 -248 3065 2919 265 334 104 36 chr6 84807373 84807708 -97607534 - L2 LINE L2 -787 2527 2170 253 181 0 14 chr6 84808029 84808101 -97607141 - L1P LINE L1 -2865 3281 3211 * 3584 83 20 2 chr6 84808095 84808986 -97606256 - L1PA8 LINE L1 -395 5777 4876 2803 76 29 0 chr6 84808986 84809366 -97605876 + L1PA8 LINE L1 5779 6170 -2 2847 209 10 17 chr6 84809370 84810079 -97605163 - L1P LINE L1 -2938 3208 2505 205 244 37 0 chr6 84810378 84810460 -97604782 + (TA)n Simple_repeat Simple_repeat 1 85 0 372 351 61 37 chr6 84810781 84811157 -97604085 - L2 LINE L2 -397 2917 2533 301 218 13 26 chr6 84811161 84811239 -97604003 + MLT2B1 LTR ERVL 1 77 -337 9660 37 2 1 chr6 84811245 84813200 -97602042 - L1PA3 LINE L1 -2 6153 4200 20379 49 0 3 chr6 84813202 84815894 -97599348 + L1P LINE L1 602 3285 -2861 831 207 150 74 chr6 84815898 84816264 -97598978 + MLT2B1 LTR ERVL 76 477 -43 330 26 0 0 chr6 84816264 84816303 -97598939 + (TG)n Simple_repeat Simple_repeat 1 39 0 831 207 150 74 chr6 84816303 84816342 -97598900 + MLT2B1 LTR ERVL 477 512 -8 289 293 60 35 chr6 84816383 84816499 -97598743 - L2 LINE L2 -815 2499 2381 1763 178 51 40 chr6 84816614 84816655 -97598587 - THE1C LTR MaLR 0 375 336 2140 136 0 23 chr6 84816655 84816964 -97598278 + AluSx SINE Alu 1 302 -10 1763 178 51 40 chr6 84816964 84817293 -97597949 - THE1C LTR MaLR -39 336 1 6443 138 87 12 chr6 84817293 84818463 -97596779 - THE1C-int LTR MaLR 0 1580 323 * 28923 96 11 13 chr6 84818461 84823891 -97591351 + L1PA7 LINE L1 735 6151 -3 2037 142 0 6 chr6 84823922 84824253 -97590989 - THE1C-int LTR MaLR -1249 331 3 1795 165 74 8 chr6 84824255 84824607 -97590635 - THE1C LTR MaLR 0 375 1 465 239 7 51 chr6 84824675 84824813 -97590429 + FLAM_C SINE Alu 1 132 -1 1953 118 4 0 chr6 84825050 84825313 -97589929 - AluSg SINE Alu -17 293 30 270 0 0 0 chr6 84825452 84825482 -97589760 + (TG)n Simple_repeat Simple_repeat 2 31 0 444 150 0 0 chr6 84826216 84826296 -97588946 + (TC)n Simple_repeat Simple_repeat 1 80 0 279 320 25 8 chr6 84826697 84826819 -97588423 + MIR SINE MIR 71 194 -68 2419 92 3 0 chr6 84827502 84827808 -97587434 + AluSc SINE Alu 1 307 -2 515 369 67 52 chr6 84828562 84828696 -97586546 + L2 LINE L2 1792 1922 -1392 207 0 0 0 chr6 84828696 84828719 -97586523 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 515 369 67 52 chr6 84828719 84829567 -97585675 + L2 LINE L2 1922 2789 -525 392 198 0 9 chr6 84829829 84829935 -97585307 + (TA)n Simple_repeat Simple_repeat 2 106 0 1587 205 13 0 chr6 84832815 84833113 -97582129 - L1M1 LINE L1 -6833 732 431 1697 203 76 19 chr6 84833267 84833448 -97581794 - L1 LINE L1 -2449 3697 3528 2230 117 0 0 chr6 84833448 84833738 -97581504 - AluSc SINE Alu -19 290 1 1697 203 76 19 chr6 84833738 84834132 -97581110 - L1 LINE L1 -2618 3528 3089 1496 262 16 6 chr6 84834139 84834646 -97580596 + L1M4 LINE L1 2542 3053 -3093 380 299 94 0 chr6 84834681 84834798 -97580444 + MIR SINE MIR 46 173 -89 1461 45 0 0 chr6 84835045 84835223 -97580019 - L1PA4 LINE L1 -3 6152 5975 3294 34 17 0 chr6 84835223 84835639 -97579603 + L1PA4 LINE L1 5552 5974 -181 2344 59 7 3 chr6 84836039 84836325 -97578917 - AluY SINE Alu -11 300 14 2111 95 15 0 chr6 84836726 84836999 -97578243 + AluSc SINE Alu 1 277 -32 348 24 0 0 chr6 84836999 84837040 -97578202 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1563 186 0 7 chr6 84837040 84837320 -97577922 + AluJb SINE Alu 2 279 -33 243 0 0 0 chr6 84837320 84837347 -97577895 + (CA)n Simple_repeat Simple_repeat 1 27 0 393 309 48 30 chr6 84837636 84837801 -97577441 - MIR SINE MIR -50 212 45 2290 111 0 0 chr6 84838044 84838342 -97576900 + AluSx SINE Alu 1 298 -14 6383 178 11 6 chr6 84838546 84839682 -97575560 + L1MA3 LINE L1 14 1155 -6410 1195 186 21 7 chr6 84839680 84839960 -97575282 + L1MA3 LINE L1 4636 4919 -2646 * 1578 213 50 0 chr6 84839971 84840389 -97574853 + L1PA15 LINE L1 4466 4904 -1242 5410 143 7 3 chr6 84840393 84841580 -97573662 + L1PA15 LINE L1 4982 6161 -4 8008 174 30 7 chr6 84841696 84844145 -97571097 + L1MA3 LINE L1 4913 7419 -305 982 214 164 24 chr6 84844439 84844812 -97570430 - MLT1D LTR MaLR 0 505 81 5821 95 31 0 chr6 84844815 84845790 -97569452 - L1PB1 LINE L1 0 6151 5175 234 0 0 0 chr6 84845790 84845816 -97569426 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 269 255 32 32 chr6 84845829 84845923 -97569319 - MLT1D LTR MaLR -411 94 1 249 331 125 16 chr6 84846111 84846431 -97568811 + MLT1L LTR MaLR 255 609 -6 254 313 175 17 chr6 84846434 84846674 -97568568 - L2 LINE L2 -517 2797 2520 897 294 67 25 chr6 84846695 84847131 -97568111 + HAL1 LINE L1 10 463 -2044 753 284 78 10 chr6 84847149 84847533 -97567709 + HAL1 LINE L1 673 1082 -1425 243 221 106 29 chr6 84847574 84847678 -97567564 + HAL1 LINE L1 2006 2117 -390 224 308 0 13 chr6 84847739 84847817 -97567425 + GA-rich Low_complexity Low_complexity 3 79 0 338 310 158 0 chr6 84847881 84848039 -97567203 + HAL1 LINE L1 2325 2507 0 1601 183 7 4 chr6 84848044 84848318 -97566924 + AluJb SINE Alu 1 275 -37 369 0 0 0 chr6 84848332 84848373 -97566869 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 986 312 65 49 chr6 84848399 84848954 -97566288 - L2 LINE L2 -818 2496 1933 2090 180 98 11 chr6 84849717 84850184 -97565058 + LTR22 LTR ERVK 2 509 0 22 35 0 0 chr6 84850503 84850532 -97564710 + AT_rich Low_complexity Low_complexity 1 29 0 1331 201 0 42 chr6 84850560 84850823 -97564419 - AluJo SINE Alu -60 252 1 474 312 147 0 chr6 84851045 84851202 -97564040 + MER5A DNA MER1_type 4 183 -6 389 182 80 0 chr6 84851251 84851339 -97563903 - MIR SINE MIR -46 216 122 182 53 53 79 chr6 84851347 84851385 -97563857 - MIR SINE MIR -63 145 109 186 71 0 0 chr6 84853398 84853426 -97561816 + (CAAAT)n Simple_repeat Simple_repeat 5 32 0 201 286 205 18 chr6 84853705 84853817 -97561425 + MER5B DNA MER1_type 46 178 0 28 0 0 0 chr6 84855702 84855730 -97559512 + AT_rich Low_complexity Low_complexity 1 28 0 602 294 102 15 chr6 84856130 84856541 -97558701 + L1M4 LINE L1 4083 4529 -1617 2261 276 48 31 chr6 84856587 84857486 -97557756 + L1M3a LINE L1 1071 1845 -4864 1788 55 30 0 chr6 84857472 84857707 -97557535 - L1PA4 LINE L1 -2333 3813 3572 * 12693 45 11 0 chr6 84857707 84860034 -97555208 + L1PA4 LINE L1 3819 6154 -1 765 206 0 0 chr6 84860054 84860195 -97555047 + L1PB4 LINE L1 6016 6156 0 486 277 34 7 chr6 84860202 84860350 -97554892 + L1M3a LINE L1 2119 2270 -4519 3755 168 23 72 chr6 84860376 84860438 -97554804 - L1MA8 LINE L1 -4 6287 6224 7487 20 1 0 chr6 84860438 84861318 -97553924 + L1PA2 LINE L1 5273 6153 -2 3755 168 23 72 chr6 84861318 84862152 -97553090 - L1MA8 LINE L1 -67 6224 5435 1324 195 6 51 chr6 84862145 84862343 -97552899 - L1MA8 LINE L1 -1036 5110 4930 * 2322 85 0 0 chr6 84862343 84862637 -97552605 - AluY SINE Alu -17 294 1 1324 195 6 51 chr6 84862637 84862751 -97552491 - L1MA8 LINE L1 -1216 4930 4812 * 9908 211 53 74 chr6 84862750 84863907 -97551335 + L1M1 LINE L1 2714 3893 -3672 2312 71 3 0 chr6 84863907 84864203 -97551039 + AluY SINE Alu 1 297 -14 9908 211 53 74 chr6 84864203 84867050 -97548192 + L1M1 LINE L1 3893 6652 -913 1920 215 33 71 chr6 84867050 84867571 -97547671 - MLT2B3 LTR ERVL -53 501 1 21 0 0 0 chr6 84867634 84867655 -97547587 + AT_rich Low_complexity Low_complexity 1 21 0 350 213 56 19 chr6 84867989 84868097 -97547145 + L1M3a LINE L1 2773 2884 -3904 183 100 0 0 chr6 84868097 84868127 -97547115 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 41643 53 8 0 chr6 84868127 84874227 -97541015 - L1PA3 LINE L1 -10 6145 1 449 351 29 17 chr6 84874259 84874433 -97540809 + MER5B DNA MER1_type 2 177 -1 23 0 0 0 chr6 84874671 84874694 -97540548 + AT_rich Low_complexity Low_complexity 1 23 0 499 357 92 14 chr6 84875373 84875656 -97539586 + L3b LINE CR1 1254 1558 -25 1087 211 10 0 chr6 84876406 84876605 -97538637 + MER58A DNA MER1_type 1 201 -23 350 308 20 20 chr6 84877330 84877476 -97537766 - MER5B DNA MER1_type -32 146 1 468 208 19 9 chr6 84877672 84877778 -97537464 - MER94 DNA DNA 0 134 28 266 321 107 14 chr6 84877833 84877973 -97537269 - L2 LINE L2 -513 2801 2649 193 349 134 34 chr6 84877996 84878265 -97536977 - L2 LINE L2 -999 2315 2020 1436 258 78 0 chr6 84878300 84878695 -97536547 - LTR16A LTR ERVL 0 450 25 194 344 33 0 chr6 84878757 84878818 -97536424 - L2 LINE L2 0 3272 3210 248 222 103 48 chr6 84878881 84879007 -97536235 - L2 LINE L2 -1358 1956 1824 182 279 38 76 chr6 84879253 84879332 -97535910 + MER5A DNA MER1_type 86 161 -28 399 240 10 0 chr6 84879436 84879540 -97535702 - MER53 DNA DNA -84 105 1 501 286 113 42 chr6 84880781 84880994 -97534248 + MIR SINE MIR 3 230 -32 1987 106 4 0 chr6 84881150 84881414 -97533828 + AluSc SINE Alu 31 295 -14 183 42 0 0 chr6 84882016 84882040 -97533202 + (ATG)n Simple_repeat Simple_repeat 2 25 0 1629 223 94 26 chr6 84882398 84882856 -97532386 - MER110 LTR ERV1 0 491 3 271 7 2 47 chr6 84883130 84883180 -97532062 - L1PA6 LINE L1 0 6154 6107 23 0 0 0 chr6 84883368 84883391 -97531851 + AT_rich Low_complexity Low_complexity 1 23 0 447 324 32 27 chr6 84883773 84883992 -97531250 - MER90 LTR ERV1 -105 509 290 2761 97 71 9 chr6 84884142 84884577 -97530665 + MER4C LTR ERV1 3 464 -1 2175 31 0 0 chr6 84886094 84886350 -97528892 - L1PA5 LINE L1 -329 5825 5570 250 228 19 136 chr6 84886443 84886605 -97528637 - L1ME3A LINE L1 -204 5966 5824 276 30 0 0 chr6 84886634 84886667 -97528575 + (TG)n Simple_repeat Simple_repeat 2 34 0 31 71 0 30 chr6 84887250 84887349 -97527893 + AT_rich Low_complexity Low_complexity 1 96 0 1412 180 27 53 chr6 84888355 84888655 -97526587 - AluJo SINE Alu -20 292 1 1920 116 3 55 chr6 84889863 84890190 -97525052 - AluSx SINE Alu -2 310 1 247 298 11 11 chr6 84890255 84890349 -97524893 - L1MDa LINE L1 -4600 1940 1847 451 300 19 9 chr6 84890540 84890750 -97524492 - L1MDa LINE L1 -4971 1559 1348 27 0 0 0 chr6 84890868 84890895 -97524347 + AT_rich Low_complexity Low_complexity 1 27 0 2290 90 3 13 chr6 84891138 84891448 -97523794 + AluSp SINE Alu 1 307 -6 792 187 180 81 chr6 84891783 84892205 -97523037 + LTR37B LTR ERV1 1 464 -4 2043 109 0 11 chr6 84892248 84892533 -97522709 - AluY SINE Alu -16 295 14 216 217 67 17 chr6 84892606 84892666 -97522576 + L2 LINE L2 3210 3272 0 1698 103 11 42 chr6 84893726 84893989 -97521253 - AluSx SINE Alu -22 290 36 281 365 58 6 chr6 84894021 84894177 -97521065 + MIR SINE MIR 86 249 -13 284 327 164 14 chr6 84895325 84895533 -97519709 - L3 LINE CR1 -755 822 584 747 355 41 25 chr6 84895803 84896318 -97518924 - HERVL LTR ERVL -2254 3400 2878 759 278 20 37 chr6 84896344 84896589 -97518653 - HERVL LTR ERVL -3202 2562 2322 2508 68 0 3 chr6 84896703 84897014 -97518228 + AluY SINE Alu 1 310 -1 301 329 77 28 chr6 84897071 84897214 -97518028 - LTR67 LTR ERVL -293 264 115 21 36 0 0 chr6 84897426 84897454 -97517788 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 84897597 84897625 -97517617 + AT_rich Low_complexity Low_complexity 1 28 0 203 241 46 46 chr6 84897704 84897791 -97517451 - MIR SINE MIR -12 250 164 2201 148 0 0 chr6 84897859 84898184 -97517058 + MER1B DNA MER1_type 1 325 -14 465 307 11 17 chr6 84899049 84899228 -97516014 + MER5B DNA MER1_type 1 178 0 396 333 26 13 chr6 84899999 84900152 -97515090 - MIR SINE MIR -70 192 38 256 146 0 0 chr6 84900225 84900273 -97514969 - L1 LINE L1 -2374 3772 3725 * 5034 148 46 52 chr6 84900270 84901692 -97513550 + L1MA4 LINE L1 4882 6295 -5 291 257 0 0 chr6 84901686 84901756 -97513486 + L1ME3 LINE L1 6091 6160 -2 * 458 277 88 6 chr6 84902206 84902365 -97512877 - MIR SINE MIR -62 200 29 25 31 0 0 chr6 84902998 84903030 -97512212 + AT_rich Low_complexity Low_complexity 1 32 0 3130 68 19 0 chr6 84903243 84903669 -97511573 - L1PA8 LINE L1 0 6172 5739 26 64 0 0 chr6 84903918 84903965 -97511277 + AT_rich Low_complexity Low_complexity 1 47 0 269 152 27 71 chr6 84903996 84904108 -97511134 + (TATAA)n Simple_repeat Simple_repeat 5 111 0 1837 151 22 151 chr6 84904146 84904702 -97510540 - LTR22B LTR ERVK -3 489 6 45 34 0 0 chr6 84904704 84904763 -97510479 + AT_rich Low_complexity Low_complexity 1 59 0 1153 130 0 0 chr6 84904838 84904998 -97510244 + AluSp SINE Alu 137 299 -14 279 0 0 0 chr6 84904998 84905029 -97510213 + (CA)n Simple_repeat Simple_repeat 2 32 0 1153 130 0 0 chr6 84905029 84905045 -97510197 + AluSp SINE Alu 298 313 0 241 283 26 35 chr6 84905286 84905399 -97509843 + L1M1 LINE L1 5641 5752 -550 25 90 0 0 chr6 84905559 84905626 -97509616 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr6 84905656 84905680 -97509562 + AT_rich Low_complexity Low_complexity 1 24 0 398 225 136 85 chr6 84906898 84907156 -97508086 + L1MC5 LINE L1 7276 7546 -415 465 228 0 0 chr6 84907156 84907235 -97508007 + MER58A DNA MER1_type 1 79 -28 269 196 0 0 chr6 84907268 84907324 -97507918 + MER58A DNA MER1_type 169 224 0 307 253 47 37 chr6 84907326 84907516 -97507726 + L1MC5 LINE L1 7541 7732 -229 294 307 72 13 chr6 84907538 84907691 -97507551 + MIR SINE MIR 101 262 0 21 57 0 0 chr6 84908198 84908233 -97507009 + AT_rich Low_complexity Low_complexity 1 35 0 2238 95 3 7 chr6 84908244 84908540 -97506702 + AluSq SINE Alu 1 295 -18 232 302 94 19 chr6 84909046 84909152 -97506090 + L1ME LINE L1 341 454 -5616 310 173 192 0 chr6 84909333 84909407 -97505835 + MER58A DNA MER1_type 35 128 0 450 256 23 63 chr6 84909407 84909708 -97505534 + L1ME LINE L1 547 835 -5235 1423 251 57 88 chr6 84909801 84910256 -97504986 + L1ME LINE L1 847 1262 -4818 483 218 0 0 chr6 84910256 84910366 -97504876 - L1PA16 LINE L1 -16 6150 6041 1423 251 57 88 chr6 84910366 84910808 -97504434 + L1ME LINE L1 1262 1716 -4364 180 0 0 0 chr6 84910939 84910959 -97504283 + (TA)n Simple_repeat Simple_repeat 2 21 0 2043 137 0 7 chr6 84910959 84911266 -97503976 - AluSq SINE Alu -8 305 1 21 0 0 0 chr6 84911346 84911367 -97503875 + AT_rich Low_complexity Low_complexity 1 21 0 2431 273 68 54 chr6 84911374 84912740 -97502502 + L1ME LINE L1 2228 3612 -2468 25 75 0 0 chr6 84912884 84912937 -97502305 + AT_rich Low_complexity Low_complexity 1 53 0 330 318 82 0 chr6 84913497 84913607 -97501635 + MIR3 SINE MIR 3 121 -87 407 373 51 70 chr6 84914544 84914957 -97500285 - L1MEd LINE L1 -5601 518 114 861 94 0 0 chr6 84915736 84915853 -97499389 - AluY SINE Alu -11 300 184 577 0 0 0 chr6 84919743 84919809 -97495433 - L1P LINE L1 -1658 4488 4423 7427 37 5 0 chr6 84919809 84921420 -97493822 + L1PA5 LINE L1 4540 6154 0 22 70 0 0 chr6 84921651 84921694 -97493548 + AT_rich Low_complexity Low_complexity 1 43 0 533 219 0 25 chr6 84921937 84922056 -97493186 - Charlie1a DNA MER1_type -1276 179 64 340 213 0 0 chr6 84922092 84922167 -97493075 - MLT1A1 LTR MaLR 0 365 291 214 178 0 0 chr6 84922171 84922216 -97493026 + T-rich Low_complexity Low_complexity 1 45 0 1375 165 91 15 chr6 84922216 84922492 -97492750 - MLT1A1 LTR MaLR -64 403 4 2091 105 7 10 chr6 84922539 84922845 -97492397 + AluSp SINE Alu 1 305 -8 279 325 17 8 chr6 84922904 84923021 -97492221 - MIR3 SINE MIR -2 206 89 34 0 0 0 chr6 84924231 84924265 -97490977 + AT_rich Low_complexity Low_complexity 1 34 0 387 297 183 18 chr6 84924466 84924685 -97490557 - MIR SINE MIR -2 260 6 2030 114 0 20 chr6 84924792 84925089 -97490153 + AluSx SINE Alu 3 293 -19 481 192 78 70 chr6 84925551 84925737 -97489505 + L1MA7 LINE L1 6111 6306 -6 225 198 99 49 chr6 84925878 84925959 -97489283 + L2 LINE L2 2765 2849 -465 30 27 0 0 chr6 84928091 84928128 -97487114 + AT_rich Low_complexity Low_complexity 1 37 0 5936 71 8 12 chr6 84928625 84929423 -97485819 - L1PA8A LINE L1 -6 6125 5332 187 284 17 52 chr6 84929807 84929891 -97485351 - MIR SINE MIR -70 192 114 210 119 24 24 chr6 84930397 84930439 -97484803 + (TA)n Simple_repeat Simple_repeat 2 43 0 268 329 59 37 chr6 84930452 84930811 -97484431 + L2 LINE L2 2526 3098 -215 438 82 24 94 chr6 84930956 84931041 -97484201 + MADE1 DNA Mariner 2 80 0 450 308 192 6 chr6 84931395 84931577 -97483665 + MIR SINE MIR 32 247 -15 42603 50 6 3 chr6 84931815 84937958 -97477284 + L1PA4 LINE L1 1 6154 -1 240 35 0 0 chr6 84938233 84938262 -97476980 + (TA)n Simple_repeat Simple_repeat 2 30 0 606 293 100 0 chr6 84938774 84939013 -97476229 - L2 LINE L2 0 3313 3051 1750 228 2 47 chr6 84939023 84939426 -97475816 + MLT1B LTR MaLR 6 390 0 260 361 20 64 chr6 84939426 84939628 -97475614 - L2 LINE L2 -258 3055 2863 1648 193 57 9 chr6 84939819 84940151 -97475091 + MER47B DNA MER2_type 1 348 -70 314 319 71 77 chr6 84940834 84941016 -97474226 - MIR3 SINE MIR -9 199 19 1953 90 11 0 chr6 84941164 84941441 -97473801 + L1PA16 LINE L1 5878 6157 -9 35 24 0 0 chr6 84941441 84941483 -97473759 + AT_rich Low_complexity Low_complexity 1 42 0 834 216 6 6 chr6 84942032 84942203 -97473039 + FAM SINE Alu 1 171 -4 28 0 0 0 chr6 84942288 84942316 -97472926 + AT_rich Low_complexity Low_complexity 1 28 0 13097 30 0 1 chr6 84942316 84944667 -97470575 - L1PA3 LINE L1 -3 6152 3825 261 331 63 16 chr6 84945000 84945127 -97470115 + L2 LINE L2 3138 3270 -2 197 271 101 70 chr6 84945890 84945926 -97469316 + MIR SINE MIR 124 157 -105 1793 201 39 18 chr6 84945926 84946314 -97468928 + MSTD LTR MaLR 1 396 0 197 271 101 70 chr6 84946314 84946406 -97468836 + MIR SINE MIR 157 256 -6 180 77 0 0 chr6 84946975 84947001 -97468241 + (TG)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr6 84947001 84947027 -97468215 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 84947746 84947767 -97467475 + AT_rich Low_complexity Low_complexity 1 21 0 257 237 53 0 chr6 84948473 84948549 -97466693 - MER116 DNA Mariner 0 80 1 30 77 0 0 chr6 84948888 84948953 -97466289 + AT_rich Low_complexity Low_complexity 1 65 0 210 318 19 56 chr6 84949825 84949932 -97465310 + L2 LINE L2 3129 3231 -82 1695 60 0 5 chr6 84949955 84950170 -97465072 - AluY SINE Alu -3 308 95 22 56 0 0 chr6 84950657 84950693 -97464549 + AT_rich Low_complexity Low_complexity 1 36 0 607 297 138 57 chr6 84951640 84952095 -97463147 - MER21B LTR ERV1 -136 727 236 8370 176 26 29 chr6 84952907 84953451 -97461791 - L1MA4 LINE L1 -6 6294 5750 243 0 0 0 chr6 84953451 84953478 -97461764 + (TA)n Simple_repeat Simple_repeat 1 27 0 8370 176 26 29 chr6 84953478 84954917 -97460325 - L1MA4 LINE L1 -550 5750 4321 1768 182 0 26 chr6 84954917 84955224 -97460018 - AluJb SINE Alu -13 299 1 8370 176 26 29 chr6 84955224 84955911 -97459331 - L1MA4 LINE L1 -1979 4321 3634 7442 29 8 0 chr6 85005919 85007486 -97407756 + L1PA4 LINE L1 4580 6153 -2 684 206 0 23 chr6 85007496 85007627 -97407615 + MER5A DNA MER1_type 61 188 -1 677 216 0 15 chr6 85008710 85008844 -97406398 + FLAM_C SINE Alu 2 133 0 626 251 77 24 chr6 85009246 85009453 -97405789 - MIR SINE MIR -1 261 44 25 0 0 0 chr6 85010112 85010137 -97405105 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr6 85010765 85010804 -97404438 + AT_rich Low_complexity Low_complexity 1 39 0 820 235 15 49 chr6 85010911 85011160 -97404082 - MIR SINE MIR -10 252 18 300 283 0 58 chr6 85011878 85012016 -97403226 + LTR67 LTR ERVL 428 557 0 221 287 167 37 chr6 85012356 85012464 -97402778 - MIR3 SINE MIR -30 178 57 2122 103 7 17 chr6 85012530 85012832 -97402410 - AluY SINE Alu -9 302 4 355 306 125 28 chr6 85014972 85015188 -97400054 + L1ME3A LINE L1 5614 5850 -320 24 53 0 0 chr6 85015229 85015267 -97399975 + AT_rich Low_complexity Low_complexity 1 38 0 192 200 0 0 chr6 85015494 85015534 -97399708 + GA-rich Low_complexity Low_complexity 1 40 0 200 326 116 30 chr6 85017205 85017438 -97397804 + L2 LINE L2 1276 1528 -1786 200 219 47 0 chr6 85017646 85017710 -97397532 + MIR SINE MIR 140 206 -56 270 337 69 11 chr6 85017720 85017981 -97397261 + L2 LINE L2 1931 2206 -1108 412 333 78 22 chr6 85017999 85018382 -97396860 - LTR67 LTR ERVL 0 557 74 519 213 46 0 chr6 85018636 85018744 -97396498 + MER67A LTR ERV1 431 543 0 531 340 66 67 chr6 85018761 85019221 -97396021 - ERVL LTR ERVL -2218 3546 3086 2206 109 0 3 chr6 85019221 85019515 -97395727 + AluSg SINE Alu 1 293 -17 531 340 66 67 chr6 85019515 85019725 -97395517 - ERVL LTR ERVL -2678 3086 2877 1231 169 20 0 chr6 85019725 85019926 -97395316 - MER70A LTR ERVL 0 472 268 464 281 32 42 chr6 85020874 85021091 -97394151 - LTR67 LTR ERVL -3 554 340 302 314 16 32 chr6 85021223 85021347 -97393895 - LTR67 LTR ERVL -350 207 86 615 315 53 68 chr6 85021417 85021830 -97393412 + MLT1I LTR MaLR 1 407 -2 359 354 32 53 chr6 85021831 85022077 -97393165 + L2 LINE L2 2250 2490 -824 2286 123 0 0 chr6 85022370 85022678 -97392564 + AluSc SINE Alu 1 308 -1 2294 199 49 38 chr6 85024261 85024813 -97390429 + MER74A LTR ERVL 1 558 0 4897 138 10 17 chr6 85024921 85025739 -97389503 - L1PA15 LINE L1 -1 6164 5353 203 0 0 36 chr6 85025758 85025786 -97389456 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4268 234 42 3 chr6 85025792 85026906 -97388336 - L1M LINE L1 -783 5363 4220 4085 214 10 26 chr6 85026905 85027888 -97387354 + L1P LINE L1 3261 4227 -1919 * 1371 223 32 7 chr6 85028521 85028804 -97386438 + MLT1A1 LTR MaLR 1 290 -75 2374 124 39 8 chr6 85029089 85029451 -97385791 + THE1C LTR MaLR 1 373 -2 6560 121 59 78 chr6 85029456 85030701 -97384541 + THE1C-int LTR MaLR 1 1222 -358 619 210 8 0 chr6 85030768 85030892 -97384350 - L1 LINE L1 -2283 3863 3739 6668 149 16 8 chr6 85030918 85031007 -97384235 + L1MA2 LINE L1 4116 4203 -2101 1787 152 142 8 chr6 85031007 85031381 -97383861 + MSTA LTR MaLR 5 428 0 8106 165 31 36 chr6 85031383 85032969 -97382273 + MSTA-int LTR MaLR 3 1580 0 1962 150 134 8 chr6 85032969 85033349 -97381893 + MSTA LTR MaLR 1 428 0 6668 149 16 8 chr6 85033349 85035430 -97379812 + L1MA2 LINE L1 4202 6304 0 884 317 56 41 chr6 85035464 85035875 -97379367 - L2 LINE L2 -74 3239 2813 1630 186 34 0 chr6 85035875 85036166 -97379076 + AluSx SINE Alu 1 301 -11 884 317 56 41 chr6 85036166 85036395 -97378847 - L2 LINE L2 -500 2813 2589 21 0 0 0 chr6 85036631 85036652 -97378590 + AT_rich Low_complexity Low_complexity 1 21 0 1392 287 115 25 chr6 85037658 85038458 -97376784 + L2 LINE L2 2412 3292 -21 23 33 0 0 chr6 85038516 85038546 -97376696 + AT_rich Low_complexity Low_complexity 1 30 0 6514 214 36 9 chr6 85038558 85040234 -97375008 - L1PA16 LINE L1 -43 6123 4494 2220 128 8 3 chr6 85040234 85040585 -97374657 + THE1A LTR MaLR 1 353 -2 11235 106 8 1 chr6 85040587 85042157 -97373085 + THE1A-int LTR MaLR 1 1580 0 2214 139 11 3 chr6 85042157 85042509 -97372733 + THE1A LTR MaLR 1 355 0 6514 214 36 9 chr6 85042509 85043320 -97371922 - L1PA16 LINE L1 -1671 4495 3562 277 293 30 40 chr6 85043615 85043714 -97371528 + MIR3 SINE MIR 88 185 -23 28 71 0 0 chr6 85043782 85043838 -97371404 + AT_rich Low_complexity Low_complexity 1 56 0 327 156 35 23 chr6 85043840 85044013 -97371229 + (TATAA)n Simple_repeat Simple_repeat 1 175 0 23 0 0 0 chr6 85044013 85044036 -97371206 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr6 85044876 85044900 -97370342 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 85045188 85045223 -97370019 + AT_rich Low_complexity Low_complexity 1 35 0 243 311 129 36 chr6 85045884 85046077 -97369165 + L3b LINE CR1 1136 1346 -237 322 248 215 20 chr6 85046112 85046261 -97368981 + MER5B DNA MER1_type 1 178 0 35 92 0 0 chr6 85047075 85047173 -97368069 + AT_rich Low_complexity Low_complexity 1 98 0 215 308 128 8 chr6 85047208 85047325 -97367917 - MIR SINE MIR -76 186 56 685 281 51 5 chr6 85047581 85047777 -97367465 - MIR SINE MIR -10 252 48 21 0 0 0 chr6 85048207 85048228 -97367014 + AT_rich Low_complexity Low_complexity 1 21 0 444 95 0 0 chr6 85048625 85048688 -97366554 - L1PA16 LINE L1 -1982 4164 4102 5294 218 27 17 chr6 85048688 85050687 -97364555 + L1PA16 LINE L1 4145 6162 -4 2700 254 70 34 chr6 85050967 85052834 -97362408 + L1MCb LINE L1 624 2422 -4142 2001 113 0 4 chr6 85052834 85053108 -97362134 + AluSx SINE Alu 5 277 -35 225 0 0 0 chr6 85053109 85053134 -97362108 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2700 254 70 34 chr6 85053134 85054095 -97361147 + L1MCb LINE L1 2421 3719 -2845 302 123 0 18 chr6 85054123 85054180 -97361062 + L1PB1 LINE L1 6095 6150 -1 782 181 90 13 chr6 85054231 85054386 -97360856 - MER58A DNA MER1_type -32 192 26 1701 181 24 0 chr6 85054465 85054757 -97360485 + AluJo SINE Alu 1 299 -13 214 179 107 36 chr6 85055112 85055168 -97360074 - L2 LINE L2 -1 3312 3253 3357 256 60 32 chr6 85055201 85056560 -97358682 + L1MCb LINE L1 3788 5183 -1381 1948 233 44 3 chr6 85056572 85057157 -97358085 + L1MC3 LINE L1 6465 7104 -681 246 266 75 11 chr6 85057162 85057256 -97357986 + MLT1F1 LTR MaLR 48 147 -420 739 234 6 23 chr6 85057256 85057427 -97357815 + L1MC3 LINE L1 7213 7380 -405 1314 160 58 14 chr6 85057438 85057713 -97357529 + L1MC3 LINE L1 7477 7763 -22 4769 161 4 0 chr6 85058041 85058853 -97356389 - L1P LINE L1 -3613 2533 1719 5960 86 55 1 chr6 85058853 85059755 -97355487 + L1PA11 LINE L1 5224 6172 -2 324 0 0 0 chr6 85060083 85060119 -97355123 + (TC)n Simple_repeat Simple_repeat 1 36 0 240 208 31 0 chr6 85061517 85061613 -97353629 + (TA)n Simple_repeat Simple_repeat 2 100 0 203 250 0 0 chr6 85061849 85061893 -97353349 + MIR SINE MIR 219 262 0 215 362 0 0 chr6 85062371 85062440 -97352802 + L2 LINE L2 3245 3313 0 11779 228 33 37 chr6 85062509 85066384 -97348858 + L1MA5 LINE L1 6 3864 -2984 1157 181 28 221 chr6 85066437 85067229 -97348013 + L1MA5 LINE L1 6182 6820 -182 318 220 88 0 chr6 85067227 85067318 -97347924 + L1MA4A LINE L1 6182 6280 -23 * 2178 106 3 34 chr6 85067834 85068155 -97347087 + AluSp SINE Alu 2 312 -1 418 256 66 22 chr6 85068621 85068758 -97346484 - MLT1K LTR MaLR -6 582 440 271 302 0 0 chr6 85068761 85068824 -97346418 + polypyrimidine Low_complexity Low_complexity 3 65 0 532 214 6 6 chr6 85068826 85068985 -97346257 + C-rich Low_complexity Low_complexity 4 162 0 619 294 62 51 chr6 85069002 85069294 -97345948 - MLT1K LTR MaLR -163 425 131 42005 52 5 4 chr6 85069424 85075536 -97339706 - L1PA4 LINE L1 -11 6144 26 365 306 20 0 chr6 85075611 85075709 -97339533 - MER5A DNA MER1_type -86 103 4 670 175 45 19 chr6 85077566 85077720 -97337522 + MLT2B3 LTR ERVL 1 158 -396 191 298 11 64 chr6 85077760 85077854 -97337388 + MIR SINE MIR 124 212 -50 1711 221 23 26 chr6 85077900 85078290 -97336952 + MLT2B3 LTR ERVL 146 534 -20 198 71 0 0 chr6 85078294 85078322 -97336920 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 207 263 61 70 chr6 85078485 85078599 -97336643 + MIR SINE MIR 100 212 -50 1985 189 54 7 chr6 85078916 85079323 -97335919 - MSTB LTR MaLR 0 426 1 432 281 23 35 chr6 85080240 85080411 -97334831 + MLT1J1 LTR MaLR 246 414 -32 238 204 0 20 chr6 85080457 85080506 -97334736 + MLT1J2 LTR MaLR 403 450 0 1603 197 30 0 chr6 85080627 85080926 -97334316 + AluJo SINE Alu 1 308 -4 704 171 0 0 chr6 85081171 85081282 -97333960 - FLAM_C SINE Alu -32 111 1 1833 253 30 26 chr6 85081906 85082397 -97332845 - LTR40a LTR ERVL -9 510 18 305 219 56 6 chr6 85082459 85082619 -97332623 + (TA)n Simple_repeat Simple_repeat 1 168 0 345 331 25 19 chr6 85082692 85082849 -97332393 + MIR SINE MIR 105 262 0 8167 164 18 121 chr6 85083676 85085953 -97329289 + L1P LINE L1 12 2053 -4093 2289 185 14 42 chr6 85085956 85086689 -97328553 - L1M2 LINE L1 -752 5539 4815 2378 88 0 0 chr6 85087186 85087481 -97327761 + AluSc SINE Alu 3 297 -12 250 255 98 52 chr6 85088774 85088927 -97326315 - MLT1J2 LTR MaLR -256 194 35 284 175 16 0 chr6 85089257 85089320 -97325922 + CT-rich Low_complexity Low_complexity 1 64 0 1112 250 56 43 chr6 85090090 85090537 -97324705 + MLT1C LTR MaLR 1 464 -3 186 71 0 0 chr6 85090914 85090942 -97324300 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2335 109 0 0 chr6 85091028 85091341 -97323901 + AluSq SINE Alu 1 313 0 260 241 13 38 chr6 85092244 85092323 -97322919 + MIR SINE MIR 112 188 -74 21 36 0 0 chr6 85092888 85092916 -97322326 + AT_rich Low_complexity Low_complexity 1 28 0 3924 190 25 25 chr6 85093553 85093953 -97321289 - MER54B LTR ERVL -2 791 389 2153 107 0 35 chr6 85093953 85094271 -97320971 + AluSc SINE Alu 1 307 -2 3924 190 25 25 chr6 85094271 85094661 -97320581 - MER54B LTR ERVL -403 390 1 184 379 31 19 chr6 85094814 85094975 -97320267 + L2 LINE L2 1951 2113 -1201 1167 277 67 17 chr6 85095256 85095929 -97319313 + L1ME3A LINE L1 5246 5956 -214 771 245 152 59 chr6 85096207 85096709 -97318533 + MLT1H1 LTR MaLR 1 555 0 28 29 0 0 chr6 85096730 85096765 -97318477 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr6 85096788 85096822 -97318420 + AT_rich Low_complexity Low_complexity 1 34 0 238 304 30 67 chr6 85096865 85097000 -97318242 + L2 LINE L2 2258 2387 -927 184 310 69 0 chr6 85097114 85097172 -97318070 - L2 LINE L2 -4 3268 3207 1511 182 65 89 chr6 85098733 85099165 -97316077 + MER66A LTR ERV1 97 478 0 305 205 20 57 chr6 85099322 85099411 -97315831 + MIR SINE MIR 66 152 -63 6635 65 2 0 chr6 85099449 85100302 -97314940 + L1PA8 LINE L1 5317 6171 -1 223 371 28 42 chr6 85102401 85102544 -97312698 + MIR SINE MIR 68 208 -54 1738 173 10 59 chr6 85102589 85103069 -97312173 + MER89 LTR ERV1 1 554 -5 29 28 0 0 chr6 85103832 85103868 -97311374 + AT_rich Low_complexity Low_complexity 1 36 0 33 0 0 0 chr6 85105513 85105546 -97309696 + AT_rich Low_complexity Low_complexity 1 33 0 232 272 37 59 chr6 85106101 85106237 -97309005 - L3 LINE CR1 -354 1223 1091 182 343 112 48 chr6 85106332 85106600 -97308642 - L3 LINE CR1 -677 900 616 27 29 0 0 chr6 85106990 85107024 -97308218 + AT_rich Low_complexity Low_complexity 1 34 0 627 316 12 0 chr6 85107252 85107423 -97307819 + LTR33 LTR ERVL 6 178 -343 235 328 96 17 chr6 85107527 85107704 -97307538 + LTR33 LTR ERVL 329 519 -2 334 336 96 18 chr6 85107706 85107926 -97307316 - L1MC/D LINE L1 -2051 5757 5521 5746 132 96 67 chr6 85107959 85109207 -97306035 + pTR5 LTR ERV1 742 2025 -413 375 194 31 20 chr6 85109207 85109305 -97305937 + LTR30 LTR ERV1 544 642 -80 1389 109 50 9 chr6 85109308 85109528 -97305714 + pTR5 LTR ERV1 172 400 -2038 1859 174 59 28 chr6 85109961 85110500 -97304742 - MLT2A2 LTR ERVL 0 554 1 2688 227 38 80 chr6 85110567 85111889 -97303353 - L1ME2 LINE L1 -9 6089 4824 559 143 250 0 chr6 85111979 85112182 -97303060 - Tigger3(Golem) DNA MER2_type -178 2851 2566 1006 256 54 0 chr6 85112182 85112499 -97302743 - L1ME2 LINE L1 -1407 4673 4340 4699 147 35 13 chr6 85112670 85112836 -97302406 - Tigger3b DNA MER2_type -1804 1225 1064 2210 119 0 0 chr6 85112836 85113139 -97302103 - AluY SINE Alu -8 303 1 4699 147 35 13 chr6 85113139 85114086 -97301156 - Tigger3b DNA MER2_type -1965 1064 2 236 238 32 0 chr6 85114092 85114155 -97301087 - L1ME2 LINE L1 -5475 595 531 241 255 66 66 chr6 85114694 85114800 -97300442 - L1ME2 LINE L1 -5964 106 1 602 300 35 22 chr6 85116750 85116980 -97298262 - MIR SINE MIR 0 262 30 243 61 0 0 chr6 85117938 85117971 -97297271 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1974 258 35 34 chr6 85118162 85118816 -97296426 - L1ME1 LINE L1 -10 6156 5502 2077 168 63 29 chr6 85118819 85119229 -97296013 - MSTB LTR MaLR -2 424 1 8026 181 55 26 chr6 85119229 85120798 -97294444 - MSTB-int LTR MaLR 0 1651 37 1907 159 81 25 chr6 85120798 85121156 -97294086 - MSTB LTR MaLR -48 378 1 715 236 121 20 chr6 85121156 85121552 -97293690 - L1ME1 LINE L1 -805 5341 5071 1893 164 65 8 chr6 85121553 85121936 -97293306 + L1MA7 LINE L1 5854 6258 -33 1250 177 26 93 chr6 85121966 85122277 -97292965 - AluJo SINE Alu -12 290 1 1702 234 89 67 chr6 85122333 85123279 -97291963 - L1ME1 LINE L1 -1099 5047 4081 1794 144 45 63 chr6 85123281 85123663 -97291579 - THE1C LTR MaLR 0 375 1 578 172 57 0 chr6 85123663 85123785 -97291457 - THE1C-int LTR MaLR 0 1580 1452 2449 110 9 0 chr6 85123826 85124172 -97291070 - THE1C-int LTR MaLR -1231 349 1 1756 138 73 62 chr6 85124174 85124543 -97290699 - THE1C LTR MaLR -2 373 1 469 253 89 9 chr6 85124543 85124768 -97290474 - L1ME1 LINE L1 -2063 4083 3841 8669 187 31 21 chr6 85124774 85127568 -97287674 - L1PB4 LINE L1 -3 6153 3337 1957 269 88 44 chr6 85127567 85128733 -97286509 - L1ME1 LINE L1 -2291 3855 2639 * 21 0 0 0 chr6 85128813 85128834 -97286408 + AT_rich Low_complexity Low_complexity 1 21 0 633 262 67 19 chr6 85128855 85129168 -97286074 + L1M4 LINE L1 2162 2489 -3657 694 128 49 137 chr6 85129230 85129434 -97285808 + L1MB1 LINE L1 5982 6167 -1 1776 245 59 56 chr6 85129439 85130317 -97284925 - L1ME1 LINE L1 -43 6123 5246 1951 262 70 26 chr6 85130436 85131041 -97284201 - L1ME1 LINE L1 -1771 4375 3717 2821 7 0 0 chr6 85131041 85131346 -97283896 + AluYa5 SINE Alu 1 305 -6 1951 262 70 26 chr6 85131346 85131630 -97283612 - L1ME1 LINE L1 -2429 3717 3447 1007 353 58 30 chr6 85131906 85133075 -97282167 - ERVL LTR ERVL -687 5077 3817 496 272 24 0 chr6 85133080 85133205 -97282037 + MLT1H1 LTR MaLR 1 128 -427 2106 311 90 30 chr6 85133281 85134539 -97280703 - ERVL LTR ERVL -3663 1333 1 439 181 13 168 chr6 85134539 85134651 -97280591 - LTR16A LTR ERVL 0 450 367 5743 97 54 5 chr6 85134651 85135633 -97279609 - L1PA13 LINE L1 0 6163 5158 439 181 13 168 chr6 85135633 85135675 -97279567 - LTR16A LTR ERVL -83 367 320 22 0 0 0 chr6 85135923 85135945 -97279297 + AT_rich Low_complexity Low_complexity 1 22 0 496 239 39 115 chr6 85137082 85137412 -97277830 - L1ME1 LINE L1 -5 6161 5857 * 2262 175 48 9 chr6 85137407 85137864 -97277378 - L1MC3 LINE L1 -1 7784 7310 1150 211 106 41 chr6 85137867 85138283 -97276959 + LTR47B LTR ERVL 1 443 0 794 340 72 48 chr6 85140212 85141393 -97273849 + LTR57-int LTR ERVL 2225 3433 -1910 328 156 26 52 chr6 85142829 85142906 -97272336 + MER4B-int LTR ERV1 5996 6070 -688 273 128 0 0 chr6 85142906 85142945 -97272297 + LTR47A LTR ERVL 2 40 -412 368 184 138 0 chr6 85142957 85143044 -97272198 - L1MC3 LINE L1 -1657 6128 6030 1385 208 73 49 chr6 85143057 85143442 -97271800 + LTR47B LTR ERVL 50 443 0 6869 208 82 55 chr6 85143444 85145602 -97269640 - L1MC3 LINE L1 -476 7727 5504 567 282 74 18 chr6 85145597 85145923 -97269319 + L1ME LINE L1 5285 5628 -536 * 381 371 83 28 chr6 85146019 85146415 -97268827 - L2 LINE L2 -613 2701 2284 525 16 0 0 chr6 85146576 85146639 -97268603 - L1PA4 LINE L1 -3794 2352 2290 24484 38 1 0 chr6 85146639 85150434 -97264808 + L1PA4 LINE L1 2354 6149 -6 28 0 0 0 chr6 85150872 85150900 -97264342 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 85151077 85151113 -97264129 + AT_rich Low_complexity Low_complexity 1 36 0 1991 141 0 0 chr6 85151329 85151636 -97263606 - AluSx SINE Alu 0 307 1 25 75 0 0 chr6 85152634 85152687 -97262555 + AT_rich Low_complexity Low_complexity 1 53 0 232 236 56 22 chr6 85152960 85153049 -97262193 + L1ME4a LINE L1 6022 6113 -8 201 227 0 0 chr6 85153690 85153734 -97261508 + L2 LINE L2 3266 3309 -4 661 307 55 4 chr6 85153892 85154130 -97261112 + MIR SINE MIR 13 262 0 616 322 62 4 chr6 85154180 85154422 -97260820 + MIR SINE MIR 1 256 -6 225 0 0 0 chr6 85154792 85154817 -97260425 + (A)n Simple_repeat Simple_repeat 1 25 0 2447 249 25 24 chr6 85155510 85156316 -97258926 - L1MC3 LINE L1 -1653 4911 4105 * 2525 176 24 34 chr6 85156313 85156846 -97258396 - L1MB8 LINE L1 -51 6127 5600 5628 34 0 0 chr6 85156855 85157525 -97257717 - L1PA4 LINE L1 0 6155 5486 3152 263 41 40 chr6 85157536 85158997 -97256245 - L1MC3 LINE L1 -2441 4123 2661 638 280 2 30 chr6 85159021 85159274 -97255968 - MLT2B1 LTR ERVL -205 310 69 6123 157 15 7 chr6 85159274 85161124 -97254118 + L1MA6 LINE L1 4437 6300 0 291 185 0 31 chr6 85161135 85161200 -97254042 - MLT2B1 LTR ERVL -351 63 1 2868 256 64 25 chr6 85161201 85162127 -97253115 - L1MC3 LINE L1 -5083 962 1 21 0 0 0 chr6 85162346 85162367 -97252875 + AT_rich Low_complexity Low_complexity 1 21 0 1977 286 47 12 chr6 85162657 85163301 -97251941 - L2 LINE L2 -865 2449 1784 180 218 0 91 chr6 85163396 85163451 -97251791 + L2 LINE L2 2930 2979 -334 2335 188 124 60 chr6 85163631 85164408 -97250834 - LTR1B LTR ERV1 0 826 1 318 270 0 0 chr6 85164652 85164726 -97250516 + MIR SINE MIR 69 142 -120 308 244 64 0 chr6 85166274 85166352 -97248890 - L2 LINE L2 -1349 1965 1883 257 0 30 0 chr6 85167040 85167073 -97248169 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 570 196 12 6 chr6 85167738 85167901 -97247341 + GA-rich Low_complexity Low_complexity 2 165 0 628 152 0 10 chr6 85168162 85168261 -97246981 + MER4A LTR ERV1 1 98 -566 2727 109 2 22 chr6 85168262 85168563 -97246679 + MER4A LTR ERV1 262 554 -110 2278 146 30 56 chr6 85168563 85169062 -97246180 - LTR19A LTR ERV1 0 486 1 2727 109 2 22 chr6 85169062 85169171 -97246071 + MER4A LTR ERV1 554 664 0 2470 118 53 14 chr6 85169871 85170302 -97244940 + LTR7 LTR ERV1 1 448 -2 221 83 28 0 chr6 85170461 85170497 -97244745 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 531 306 176 34 chr6 85170504 85171005 -97244237 - L2 LINE L2 -36 3277 2689 2589 280 205 17 chr6 85171005 85172259 -97242983 - L2 LINE L2 -821 2493 1004 1545 182 58 121 chr6 85172261 85172799 -97242443 - MER67D LTR ERV1 0 514 11 214 341 24 32 chr6 85172803 85172926 -97242316 - L2 LINE L2 -2312 1002 881 920 322 46 7 chr6 85174909 85175213 -97240029 + MLT2E LTR ERVL 44 359 -269 273 326 54 34 chr6 85175265 85175395 -97239847 + L2 LINE L2 3163 3298 -15 420 20 0 0 chr6 85175395 85175444 -97239798 + (TA)n Simple_repeat Simple_repeat 1 49 0 273 326 54 34 chr6 85175444 85175460 -97239782 + L2 LINE L2 3298 3312 -1 21 0 0 0 chr6 85176425 85176446 -97238796 + AT_rich Low_complexity Low_complexity 1 21 0 4500 72 17 1 chr6 85177312 85178400 -97236842 - HERVL-A1 LTR ERVL -4484 1170 2 2930 92 75 0 chr6 85178403 85178816 -97236426 - MLT2A1 LTR ERVL 0 444 1 339 256 0 0 chr6 85178817 85178895 -97236347 - L1P LINE L1 -2642 3504 3427 2506 53 0 0 chr6 85179046 85179349 -97235893 + AluY SINE Alu 1 303 -8 23 0 0 0 chr6 85179420 85179443 -97235799 + AT_rich Low_complexity Low_complexity 1 23 0 431 270 68 37 chr6 85179527 85179690 -97235552 + MIR SINE MIR 34 201 -61 1371 231 159 26 chr6 85179716 85180136 -97235106 + MLT1D LTR MaLR 5 480 -25 2481 61 0 0 chr6 85180811 85181122 -97234120 + AluY SINE Alu 1 311 0 743 268 143 0 chr6 85183092 85183316 -97231926 - MIR SINE MIR -6 256 1 22 35 0 0 chr6 85183617 85183646 -97231596 + AT_rich Low_complexity Low_complexity 1 29 0 303 49 0 0 chr6 85184131 85184172 -97231070 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 128 0 0 chr6 85184172 85184219 -97231023 + (GA)n Simple_repeat Simple_repeat 1 47 0 1672 215 20 6 chr6 85184219 85184563 -97230679 - MLT2C1 LTR ERVL -48 349 1 345 323 132 39 chr6 85185056 85185092 -97230150 + L2 LINE L2 2841 2872 -441 1015 210 46 122 chr6 85185092 85185487 -97229755 + MLT1A1 LTR MaLR 1 365 0 345 323 132 39 chr6 85185487 85185760 -97229482 + L2 LINE L2 2872 3179 -134 742 259 13 66 chr6 85186214 85186531 -97228711 - L1ME3A LINE L1 -260 5910 5611 550 218 91 24 chr6 85189321 85189486 -97225756 - MER69A DNA AcHobo -1 176 1 13158 127 18 6 chr6 85190039 85191695 -97223547 + L1PA10 LINE L1 3205 4930 -1238 2368 126 0 8 chr6 85191695 85192053 -97223189 - THE1A LTR MaLR 0 355 1 13158 127 18 6 chr6 85192053 85193305 -97221937 + L1PA10 LINE L1 4930 6165 -3 180 350 60 10 chr6 85193552 85193652 -97221590 + L2 LINE L2 3198 3302 -11 1056 189 50 0 chr6 85194584 85194785 -97220457 + MSTA LTR MaLR 218 428 0 490 294 196 0 chr6 85195028 85195212 -97220030 - MIR SINE MIR -31 231 12 2068 179 27 12 chr6 85195779 85196097 -97219145 + L1MA5 LINE L1 5465 5792 -508 273 75 0 0 chr6 85196097 85196137 -97219105 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 2068 179 27 12 chr6 85196137 85196221 -97219021 + L1MA5 LINE L1 5792 5873 -427 * 2922 200 70 22 chr6 85196217 85196912 -97218330 - L1M4b LINE L1 -5422 1437 709 759 233 0 0 chr6 85196953 85197099 -97218143 - MER2 DNA MER2_type -198 147 2 444 37 0 0 chr6 85197118 85197172 -97218070 + (TG)n Simple_repeat Simple_repeat 2 55 0 2002 137 29 40 chr6 85197932 85198311 -97216931 + THE1C LTR MaLR 1 375 0 213 154 0 0 chr6 85198457 85198496 -97216746 + (CA)n Simple_repeat Simple_repeat 2 40 0 328 309 21 27 chr6 85198523 85198711 -97216531 - L1MEc LINE L1 -4929 1381 1195 355 258 88 22 chr6 85198724 85198906 -97216336 - L1MEc LINE L1 -5004 1115 922 1977 236 6 4 chr6 85198910 85199415 -97215827 - L1PA16 LINE L1 -921 5225 4720 4748 168 26 19 chr6 85199423 85199894 -97215348 + L1PA16 LINE L1 5254 5735 -431 2364 84 0 3 chr6 85199894 85200191 -97215051 + AluSg SINE Alu 1 296 -14 4748 168 26 19 chr6 85200191 85200606 -97214636 + L1PA16 LINE L1 5735 6146 -20 23 0 0 0 chr6 85200606 85200629 -97214613 + AT_rich Low_complexity Low_complexity 1 23 0 3534 190 69 4 chr6 85201292 85201970 -97213272 - MER72 LTR ERV1 0 722 1 332 286 185 5 chr6 85202294 85202483 -97212759 - MIR SINE MIR 0 262 40 420 333 87 73 chr6 85202835 85203089 -97212153 - L2 LINE L2 -656 2658 2409 180 0 0 0 chr6 85203089 85203109 -97212133 + (CAA)n Simple_repeat Simple_repeat 2 21 0 420 333 87 73 chr6 85203109 85203466 -97211776 - L2 LINE L2 -905 2409 2039 1341 182 104 28 chr6 85203867 85204185 -97211057 + MER2 DNA MER2_type 2 343 -1 23 97 0 0 chr6 85204582 85204654 -97210588 + AT_rich Low_complexity Low_complexity 1 72 0 347 342 41 36 chr6 85205248 85205444 -97209798 + L1ME LINE L1 5283 5479 -687 192 40 0 0 chr6 85205847 85205872 -97209370 + (CA)n Simple_repeat Simple_repeat 2 26 0 353 200 0 0 chr6 85205878 85205893 -97209349 + AluSg/x SINE Alu 121 135 -167 2305 114 0 0 chr6 85205893 85206201 -97209041 + AluSg SINE Alu 1 308 -2 22 35 0 0 chr6 85206239 85206268 -97208974 + AT_rich Low_complexity Low_complexity 1 29 0 6227 15 57 0 chr6 85206276 85207017 -97208225 + L1PA2 LINE L1 5373 6155 0 207 0 0 0 chr6 85207027 85207050 -97208192 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 364 378 40 0 chr6 85207495 85207643 -97207599 - L2 LINE L2 0 3272 3119 454 260 57 18 chr6 85207820 85208136 -97207106 + L1PBa LINE L1 2894 3365 -4201 400 285 54 12 chr6 85208211 85208453 -97206789 + L1M1 LINE L1 3316 3567 -3998 * 8832 204 42 36 chr6 85208450 85208665 -97206577 + L1M1 LINE L1 10 222 -7343 1831 144 7 4 chr6 85208665 85208936 -97206306 + AluSq SINE Alu 1 272 -41 8832 204 42 36 chr6 85208936 85208947 -97206295 + L1M1 LINE L1 222 231 -7334 207 0 0 0 chr6 85208947 85208970 -97206272 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8832 204 42 36 chr6 85208970 85210815 -97204427 + L1M1 LINE L1 231 2096 -5469 2102 208 65 4 chr6 85210815 85211295 -97203947 + LTR22 LTR ERVK 1 509 0 366 214 36 0 chr6 85211295 85211379 -97203863 + HERVK22 LTR ERVK 1 87 -6750 229 250 0 0 chr6 85211384 85211436 -97203806 + LTR30 LTR ERV1 1 52 -670 724 152 7 17 chr6 85211436 85211594 -97203648 + LTR12 LTR ERV1 100 234 -480 258 130 0 0 chr6 85211655 85211701 -97203541 + LTR12 LTR ERV1 232 277 -437 300 260 0 0 chr6 85211701 85211778 -97203464 + LTR30 LTR ERV1 544 620 -102 687 187 24 0 chr6 85211778 85211901 -97203341 + LTR12 LTR ERV1 355 480 -234 1421 83 5 0 chr6 85211902 85212095 -97203147 + HERVK22 LTR ERVK 100 293 -6544 271 250 29 0 chr6 85212438 85212506 -97202736 + (CATA)n Simple_repeat Simple_repeat 3 72 0 363 44 0 0 chr6 85212506 85212551 -97202691 + (TG)n Simple_repeat Simple_repeat 2 46 0 308 250 48 0 chr6 85213246 85213330 -97201912 + MER90 LTR ERV1 3 90 -485 1090 238 66 49 chr6 85213380 85213671 -97201571 + MER90 LTR ERV1 205 505 -70 3033 115 18 30 chr6 85213671 85214166 -97201076 + LTR15 LTR ERV1 1 489 -4 1090 238 66 49 chr6 85214166 85214239 -97201003 + MER90 LTR ERV1 505 575 0 27 29 0 0 chr6 85214389 85214423 -97200819 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr6 85214519 85214550 -97200692 + AT_rich Low_complexity Low_complexity 1 31 0 1711 66 0 5 chr6 85214971 85215232 -97200010 - AluY SINE Alu 0 333 74 17716 86 9 8 chr6 85215574 85218090 -97197152 - HERVK22 LTR ERVK -864 5973 3453 9923 207 53 43 chr6 85218190 85219857 -97195385 - L1 LINE L1 -868 5278 3564 2086 134 3 0 chr6 85219857 85220163 -97195079 - AluSx SINE Alu -4 308 2 9923 207 53 43 chr6 85220163 85221571 -97193671 - L1 LINE L1 -2582 3564 2172 4084 74 12 3 chr6 85221682 85222253 -97192989 - HERVL-A1 LTR ERVL -5077 577 2 2950 85 78 2 chr6 85222256 85222669 -97192573 - MLT2A1 LTR ERVL 0 444 1 311 256 0 0 chr6 85222670 85222748 -97192494 - L1P LINE L1 -2642 3504 3427 2599 55 0 0 chr6 85222899 85223210 -97192032 + AluY SINE Alu 1 311 0 43 49 0 12 chr6 85223242 85223286 -97191956 + AT_rich Low_complexity Low_complexity 1 45 -36 5891 27 61 1 chr6 85223286 85224025 -97191217 + L1PA2 LINE L1 5373 6155 0 43 49 0 12 chr6 85224025 85224062 -97191180 + AT_rich Low_complexity Low_complexity 45 81 0 364 378 40 0 chr6 85224498 85224646 -97190596 - L2 LINE L2 0 3272 3119 479 278 60 17 chr6 85224839 85225138 -97190104 + L1M1 LINE L1 2894 3205 -4360 1149 300 58 28 chr6 85225591 85226356 -97188886 - L2 LINE L2 0 3313 2526 1885 151 0 42 chr6 85226832 85227144 -97188098 - AluSx SINE Alu -13 299 1 429 210 30 97 chr6 85227610 85227877 -97187365 - L1 LINE L1 -1617 4529 4281 1010 157 6 6 chr6 85227903 85228062 -97187180 - AluSx SINE Alu -153 159 1 7564 211 29 6 chr6 85228064 85229966 -97185276 - L1 LINE L1 -1860 4286 2342 1866 157 13 3 chr6 85230450 85230750 -97184492 - AluSx SINE Alu -9 303 1 1309 223 102 18 chr6 85232000 85232400 -97182842 - MER57B LTR ERV1 0 434 1 180 331 106 38 chr6 85232454 85232614 -97182628 + L2 LINE L2 2576 2746 -568 2239 65 0 52 chr6 85233516 85233826 -97181416 + AluY SINE Alu 1 294 -17 2348 146 13 2 chr6 85233934 85234332 -97180910 - ERVL LTR ERVL -1188 4576 4175 * 6566 157 9 1 chr6 85234330 85235418 -97179824 - ERVL LTR ERVL -2049 3715 2619 1613 147 11 0 chr6 85235412 85235678 -97179564 - ERVL LTR ERVL -3057 2707 2439 * 3514 140 23 4 chr6 85235899 85236927 -97178315 - L1P4 LINE L1 -475 5699 4652 198 103 0 0 chr6 85237941 85237970 -97177272 + (CA)n Simple_repeat Simple_repeat 2 30 0 185 0 40 0 chr6 85238479 85238504 -97176738 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2178 129 0 0 chr6 85238506 85238809 -97176433 - AluSx SINE Alu -9 303 1 565 127 38 46 chr6 85239547 85239713 -97175529 + L1M3 LINE L1 5382 5536 -635 1764 114 23 23 chr6 85239816 85240123 -97175119 - THE1C LTR MaLR -68 307 1 10002 105 36 51 chr6 85240123 85241726 -97173516 - THE1C-int LTR MaLR 0 1580 2 2348 105 68 3 chr6 85241728 85242079 -97173163 - THE1C LTR MaLR -1 374 1 26 0 0 0 chr6 85242743 85242769 -97172473 + AT_rich Low_complexity Low_complexity 1 26 0 658 258 68 157 chr6 85242975 85243734 -97171508 - L2 LINE L2 -1308 2006 1315 286 252 63 84 chr6 85243734 85243877 -97171365 - L2 LINE L2 -2928 386 247 547 304 42 24 chr6 85243877 85244045 -97171197 + MER5B DNA MER1_type 1 171 -7 8727 171 110 50 chr6 85244814 85246745 -97168497 - L1MA3 LINE L1 -2 7722 5907 859 49 0 0 chr6 85246745 85246847 -97168395 - AluSc SINE Alu -12 297 196 8727 171 110 50 chr6 85246847 85248172 -97167070 - L1MA3 LINE L1 -1817 5907 4662 1091 199 23 0 chr6 85248172 85248393 -97166849 - L1PA16 LINE L1 -7 6159 5934 8727 171 110 50 chr6 85248393 85249595 -97165647 - L1MA3 LINE L1 -3062 4662 2868 1574 158 167 38 chr6 85249597 85249635 -97165607 - MSTA LTR MaLR -2 426 394 2147 115 0 0 chr6 85249635 85249913 -97165329 + AluSg SINE Alu 1 278 -32 245 51 26 0 chr6 85249920 85249959 -97165283 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1574 158 167 38 chr6 85249959 85250278 -97164964 - MSTA LTR MaLR -39 389 14 2374 135 0 16 chr6 85250278 85250648 -97164594 - THE1B LTR MaLR 0 364 1 9427 134 30 29 chr6 85250648 85252226 -97163016 - THE1B-int LTR MaLR 0 1580 1 2193 145 25 11 chr6 85252226 85252585 -97162657 - THE1B LTR MaLR 0 364 1 1615 167 35 0 chr6 85252585 85252867 -97162375 - THE1B LTR MaLR -72 292 1 8301 179 21 37 chr6 85252885 85254562 -97160680 - MSTA-int LTR MaLR 0 1651 1 1941 165 74 37 chr6 85254581 85254987 -97160255 - MSTA LTR MaLR 0 428 8 2718 116 12 21 chr6 85255011 85255493 -97159749 - L1MA3 LINE L1 -4705 2860 2383 5533 163 19 7 chr6 85255507 85256888 -97158354 - L1MA3 LINE L1 0 6305 4909 1236 136 9 22 chr6 85256885 85257113 -97158129 - L1MA3 LINE L1 -5160 2405 2181 * 408 125 0 0 chr6 85257113 85257177 -97158065 + (TCCC)n Simple_repeat Simple_repeat 4 67 0 295 295 74 25 chr6 85257282 85257404 -97157838 + L2 LINE L2 3184 3311 -2 311 271 108 16 chr6 85258806 85258935 -97156307 - MIR SINE MIR 0 262 122 519 317 108 36 chr6 85259666 85260000 -97155242 - LTR16A LTR ERVL -22 428 71 793 195 20 76 chr6 85260762 85261126 -97154116 + MSTB1 LTR MaLR 1 432 0 9468 20 5 0 chr6 85261172 85263049 -97152193 + L1PA4 LINE L1 4268 6152 -3 747 267 126 48 chr6 85263988 85264504 -97150738 - LTR38 LTR ERV1 0 556 1 416 333 29 35 chr6 85264504 85264675 -97150567 + MIR3 SINE MIR 11 180 -28 280 309 103 17 chr6 85265065 85265298 -97149944 - MLT1L LTR MaLR -6 609 357 * 683 336 59 16 chr6 85265268 85265589 -97149653 - MLT1K LTR MaLR -229 359 25 391 260 130 14 chr6 85266783 85266929 -97148313 + MLT1D LTR MaLR 19 181 -445 652 240 35 6 chr6 85266951 85267122 -97148120 + MLT1D LTR MaLR 322 497 -8 712 259 25 0 chr6 85267235 85267397 -97147845 + MLT1-int LTR MaLR 692 857 -514 1065 257 20 85 chr6 85267561 85267962 -97147280 + MLT1-int LTR MaLR 963 1337 -34 217 392 14 7 chr6 85268076 85268224 -97147018 - MIR3 SINE MIR -6 202 54 8715 132 40 40 chr6 85268599 85270062 -97145180 - THE1C-int LTR MaLR -118 1462 1 2589 108 5 13 chr6 85270062 85270440 -97144802 - THE1C LTR MaLR 0 375 1 1152 233 63 43 chr6 85270440 85270855 -97144387 - L1MCa LINE L1 -4209 2236 1831 2085 127 0 31 chr6 85270855 85271038 -97144204 - AluSq SINE Alu 0 313 143 2280 72 3 30 chr6 85271038 85271342 -97143900 - AluY SINE Alu -15 296 1 2085 127 0 31 chr6 85271342 85271481 -97143761 - AluSq SINE Alu -170 143 1 1152 233 63 43 chr6 85271481 85271840 -97143402 - L1MCa LINE L1 -4614 1831 1290 * 1786 218 46 30 chr6 85271835 85272065 -97143177 - L1MCa LINE L1 -5924 502 277 1901 156 49 15 chr6 85272065 85272391 -97142851 + MER1B DNA MER1_type 1 337 0 1786 218 46 30 chr6 85272391 85272619 -97142623 - L1MCa LINE L1 -6149 277 37 21 89 0 0 chr6 85272644 85272700 -97142542 + AT_rich Low_complexity Low_complexity 1 56 0 3846 200 63 8 chr6 85272830 85274458 -97140784 - L1MA10 LINE L1 -112 6222 4513 231 227 57 45 chr6 85274457 85274545 -97140697 - L1ME LINE L1 -386 5735 5647 * 1572 185 19 0 chr6 85276507 85276815 -97138427 - L1MA6 LINE L1 0 6300 5987 1047 127 0 6 chr6 85276815 85276996 -97138246 + L1M1 LINE L1 5282 5461 -839 932 281 15 23 chr6 85277285 85277548 -97137694 - MIR SINE MIR 0 262 2 763 277 87 54 chr6 85280863 85281081 -97134161 - MLT1E2 LTR MaLR -375 249 1 265 313 99 15 chr6 85281115 85281246 -97133996 - HAL1 LINE L1 -2363 144 3 26 50 0 0 chr6 85281319 85281359 -97133883 + AT_rich Low_complexity Low_complexity 1 40 0 213 178 0 0 chr6 85281451 85281496 -97133746 + (TG)n Simple_repeat Simple_repeat 2 46 0 25 0 0 0 chr6 85281631 85281656 -97133586 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 85281869 85281904 -97133338 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr6 85282984 85283007 -97132235 + (TG)n Simple_repeat Simple_repeat 2 24 0 222 306 16 0 chr6 85283070 85283132 -97132110 + L2 LINE L2 3201 3263 -9 369 353 0 14 chr6 85283474 85283613 -97131629 - MIR SINE MIR -124 138 2 351 283 67 75 chr6 85285340 85285938 -97129304 + L1MEc LINE L1 793 1385 -5011 258 286 0 0 chr6 85286062 85286139 -97129103 + L1MEc LINE L1 1564 1640 -4756 594 286 57 25 chr6 85286262 85286545 -97128697 + L1MEc LINE L1 1850 2141 -4255 4487 173 36 33 chr6 85286685 85287862 -97127380 - L1PB4 LINE L1 0 6872 5711 3573 29 0 0 chr6 85287865 85288284 -97126958 - L1PA3 LINE L1 -1 6154 5736 15400 35 2 1 chr6 85288284 85290199 -97125043 + L1P LINE L1 1488 3403 -2743 9507 143 69 19 chr6 85290194 85293196 -97122046 - L1PB4 LINE L1 -3214 3648 317 * 3390 48 0 0 chr6 85293196 85293612 -97121630 - L1PA4 LINE L1 -3 6152 5737 9507 143 69 19 chr6 85293612 85293936 -97121306 - L1PB4 LINE L1 -6545 317 11 2086 134 0 3 chr6 85293939 85294237 -97121005 - AluSx SINE Alu -13 299 3 526 211 35 116 chr6 85295031 85295230 -97120012 - MER63A DNA MER1_type 0 210 28 335 335 99 14 chr6 85295299 85295511 -97119731 - L2 LINE L2 -1500 1814 1585 374 304 147 0 chr6 85296055 85296239 -97119003 - L2 LINE L2 -2801 513 303 278 313 27 18 chr6 85296878 85296990 -97118252 + MIR3 SINE MIR 92 204 -4 850 94 0 0 chr6 85297054 85297171 -97118071 + AluY SINE Alu 195 311 0 305 214 128 43 chr6 85297259 85297376 -97117866 - MIR3 SINE MIR -11 197 71 296 299 65 33 chr6 85300404 85300588 -97114654 + L1M4 LINE L1 11 200 -6659 933 273 34 0 chr6 85300628 85301013 -97114229 + L1M4 LINE L1 3534 3931 -3026 230 316 100 74 chr6 85301154 85301181 -97114061 - L2 LINE L2 -617 2697 2672 3117 175 163 42 chr6 85301181 85301918 -97113324 + LTR1B LTR ERV1 1 826 0 230 316 100 74 chr6 85301918 85302159 -97113083 - L2 LINE L2 -642 2672 2422 284 363 68 46 chr6 85302381 85302924 -97112318 - L2 LINE L2 -717 2597 2043 184 361 28 0 chr6 85303699 85303771 -97111471 + L2 LINE L2 3123 3196 -76 246 167 67 33 chr6 85304894 85304954 -97110288 + L1M2 LINE L1 2 63 -6786 2142 253 16 0 chr6 85304978 85305425 -97109817 + L1M2 LINE L1 191 644 -6205 * 4397 168 45 26 chr6 85305411 85306391 -97108851 + L1M2 LINE L1 1569 2566 -4283 256 169 62 0 chr6 85306389 85306454 -97108788 - L1 LINE L1 -3696 2450 2382 * 912 191 30 10 chr6 85306532 85306742 -97108500 + L1M4c LINE L1 1692 2309 -4074 2100 116 0 14 chr6 85307392 85307685 -97107557 - AluSx SINE Alu -23 289 1 294 115 0 0 chr6 85307799 85307851 -97107391 + (TC)n Simple_repeat Simple_repeat 2 53 0 228 135 0 0 chr6 85307928 85307965 -97107277 + (TA)n Simple_repeat Simple_repeat 1 37 0 210 139 0 0 chr6 85308052 85308088 -97107154 + (TC)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr6 85308131 85308151 -97107091 + (TA)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chr6 85308350 85308386 -97106856 + AT_rich Low_complexity Low_complexity 1 36 0 253 250 0 28 chr6 85308532 85308604 -97106638 + (ATG)n Simple_repeat Simple_repeat 2 71 0 343 302 157 0 chr6 85308680 85308839 -97106403 - MIR SINE MIR -50 212 29 290 275 38 0 chr6 85309324 85309404 -97105838 + MIR SINE MIR 100 182 -80 1236 179 31 92 chr6 85309423 85309836 -97105406 + MLT1B LTR MaLR 1 388 -2 1817 299 72 66 chr6 85309884 85311100 -97104142 - L1MCc LINE L1 -5184 1239 17 1890 138 3 35 chr6 85311449 85311490 -97103752 - AluSx SINE Alu -11 301 260 246 62 0 0 chr6 85311490 85311522 -97103720 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1890 138 3 35 chr6 85311522 85311791 -97103451 - AluSx SINE Alu -52 260 1 406 303 76 16 chr6 85312977 85313162 -97102080 - MIR SINE MIR -1 261 66 1984 108 21 0 chr6 85313322 85313610 -97101632 - AluSq SINE Alu -19 294 1 215 288 0 17 chr6 85314852 85314911 -97100331 + GA-rich Low_complexity Low_complexity 1 58 0 667 278 84 82 chr6 85315222 85315713 -97099529 + MLT1H LTR MaLR 21 549 0 238 316 0 0 chr6 85315716 85315795 -97099447 + MLT1H-int LTR MaLR 4 82 -1653 1541 148 39 44 chr6 85316808 85317146 -97098096 - L1MA9 LINE L1 -2 6310 5975 252 114 0 0 chr6 85317148 85317183 -97098059 - MSTC LTR MaLR -393 35 1 664 320 29 23 chr6 85317264 85317573 -97097669 + LTR16A1 LTR ERVL 147 457 0 1866 285 115 66 chr6 85317602 85317865 -97097377 + L1MCc LINE L1 19 268 -6155 2490 41 0 0 chr6 85317865 85318157 -97097085 - AluY SINE Alu -18 293 2 1866 285 115 66 chr6 85318157 85319065 -97096177 + L1MCc LINE L1 268 1270 -5153 1926 183 0 0 chr6 85319065 85319377 -97095865 - AluJb SINE Alu 0 312 1 1866 285 115 66 chr6 85319377 85319592 -97095650 + L1MCc LINE L1 1270 1473 -4950 249 304 7 72 chr6 85319597 85319735 -97095507 + MIR SINE MIR 122 250 -12 213 39 0 0 chr6 85320004 85320030 -97095212 + (TTG)n Simple_repeat Simple_repeat 2 27 0 33 25 0 0 chr6 85320928 85320968 -97094274 + AT_rich Low_complexity Low_complexity 1 40 0 2610 99 6 0 chr6 85321024 85321377 -97093865 - THE1A LTR MaLR 0 355 1 10610 105 23 10 chr6 85321377 85322496 -97092746 - THE1A-int LTR MaLR 0 1580 434 1982 134 14 0 chr6 85322496 85322787 -97092455 - AluY SINE Alu -16 295 1 10610 105 23 10 chr6 85322787 85323227 -97092015 - THE1A-int LTR MaLR -1146 434 1 2612 88 8 0 chr6 85323227 85323579 -97091663 - THE1A LTR MaLR 0 355 1 397 213 0 13 chr6 85323594 85323669 -97091573 - MIR SINE MIR -188 74 1 607 268 47 11 chr6 85323689 85323879 -97091363 + MIR SINE MIR 61 257 -5 520 308 97 0 chr6 85324131 85324316 -97090926 - MIR SINE MIR -1 261 59 1224 168 136 32 chr6 85325340 85325649 -97089593 + MER4A LTR ERV1 1 341 -323 578 122 223 9 chr6 85325701 85325846 -97089396 + MER4C LTR ERV1 291 610 0 237 255 261 32 chr6 85325970 85326127 -97089115 - L2 LINE L2 -8 3305 3113 372 287 37 22 chr6 85326400 85326536 -97088706 - MIR SINE MIR -5 257 120 24 53 0 0 chr6 85327635 85327673 -97087569 + AT_rich Low_complexity Low_complexity 1 38 0 2074 128 3 3 chr6 85327708 85328014 -97087228 + AluSg SINE Alu 1 306 -4 212 0 36 0 chr6 85328194 85328222 -97087020 + (TA)n Simple_repeat Simple_repeat 1 29 0 617 306 125 31 chr6 85329993 85330378 -97084864 + L2 LINE L2 1702 2122 -1192 1043 240 54 23 chr6 85330402 85330660 -97084582 + MLT1A1 LTR MaLR 98 363 -2 257 348 34 0 chr6 85330677 85330766 -97084476 + L2 LINE L2 3222 3313 0 2337 67 0 10 chr6 85331823 85332123 -97083119 + AluY SINE Alu 1 297 -14 2425 41 0 0 chr6 85332409 85332702 -97082540 + L1PA3 LINE L1 5862 6154 -1 316 319 27 80 chr6 85332880 85333143 -97082099 - MLT1J1 LTR MaLR 0 446 198 1430 241 27 14 chr6 85335638 85336007 -97079235 - MLT1A2 LTR MaLR 0 374 1 366 253 93 41 chr6 85336046 85336240 -97079002 - MLT1K LTR MaLR -6 582 379 43 47 0 0 chr6 85336292 85336356 -97078886 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr6 85337105 85337126 -97078116 + AT_rich Low_complexity Low_complexity 1 21 0 198 320 64 13 chr6 85337350 85337428 -97077814 - L2 LINE L2 0 3272 3191 412 330 103 31 chr6 85337898 85338249 -97076993 - L2 LINE L2 -1613 1701 1326 5814 198 22 17 chr6 85338250 85340155 -97075087 - L1P5 LINE L1 -376 6491 4574 5571 191 53 20 chr6 85340126 85340596 -97074646 - L1PBb LINE L1 -2848 3355 2902 * 2906 168 42 81 chr6 85340596 85341315 -97073927 + LTR8 LTR ERV1 1 691 0 5571 191 53 20 chr6 85341315 85344094 -97071148 - L1PBb LINE L1 -3301 2902 1 1036 121 46 0 chr6 85344110 85344283 -97070959 - L1PBb LINE L1 -5447 757 577 * 3843 271 26 57 chr6 85344280 85345899 -97069343 - L1P5 LINE L1 -5292 912 -656 22 0 0 0 chr6 85345984 85346006 -97069236 + AT_rich Low_complexity Low_complexity 1 22 0 2039 128 3 0 chr6 85346137 85346443 -97068799 - AluSx SINE Alu 0 312 6 694 203 32 16 chr6 85346448 85346635 -97068607 - L1 LINE L1 -1102 5044 4855 1024 157 5 10 chr6 85346868 85347065 -97068177 - L1MA4 LINE L1 0 6300 6105 7866 195 38 17 chr6 85347071 85347580 -97067662 - L1MA4A LINE L1 -282 6723 6226 333 0 0 0 chr6 85347580 85347617 -97067625 + (TG)n Simple_repeat Simple_repeat 2 38 0 7866 195 38 17 chr6 85347617 85348469 -97066773 - L1MA4A LINE L1 -779 6226 5394 1979 141 0 7 chr6 85348469 85348759 -97066483 - AluSx SINE Alu -22 290 3 7866 195 38 17 chr6 85348759 85349480 -97065762 - L1MA4A LINE L1 -1611 5394 4578 2090 132 3 0 chr6 85349480 85349783 -97065459 - AluSg SINE Alu -6 304 1 7866 195 38 17 chr6 85349783 85350174 -97065068 - L1MA4A LINE L1 -2427 4578 4197 4297 208 55 35 chr6 85350177 85350938 -97064304 - L1MA4A LINE L1 -3609 3239 2495 297 51 0 0 chr6 85350938 85350977 -97064265 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 4297 208 55 35 chr6 85350977 85351841 -97063401 - L1MA4A LINE L1 -4353 2495 1581 322 411 17 17 chr6 85352734 85352914 -97062328 + MIR3 SINE MIR 8 187 -21 467 305 108 28 chr6 85354930 85355179 -97060063 + MLT1J2 LTR MaLR 37 305 -145 10674 200 26 3 chr6 85355751 85358739 -97056503 + L1PB4 LINE L1 3444 6503 -1062 658 263 65 17 chr6 85358731 85359018 -97056224 - L1PBb LINE L1 -5103 1101 784 * 2929 151 38 8 chr6 85359017 85359629 -97055613 + L1PB4 LINE L1 6576 7208 -367 198 263 0 0 chr6 85359648 85359705 -97055537 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1811 151 49 33 chr6 85359708 85360073 -97055169 + L1PB4 LINE L1 7202 7572 -3 463 258 80 27 chr6 85360091 85360410 -97054832 + L1MC/D LINE L1 5188 5526 -643 270 191 15 15 chr6 85360410 85360478 -97054764 + L1MA8 LINE L1 6220 6287 -4 188 250 83 0 chr6 85360654 85360726 -97054516 - MER5C DNA MER1_type -92 232 155 * 297 350 97 22 chr6 85360697 85360828 -97054414 - MIR SINE MIR 0 262 142 2011 97 10 30 chr6 85360828 85361126 -97054116 + AluSq SINE Alu 3 294 -19 297 350 97 22 chr6 85361126 85361220 -97054022 - MIR SINE MIR -120 142 20 278 287 157 73 chr6 85361458 85361719 -97053523 - L3 LINE CR1 -191 1386 1104 316 312 98 45 chr6 85362041 85362439 -97052803 - MLT1J LTR MaLR -12 499 81 289 375 116 25 chr6 85364138 85364458 -97050784 + L2 LINE L2 2916 3264 -8 268 353 30 8 chr6 85365451 85365584 -97049658 + L3b LINE CR1 1248 1383 -200 1385 91 5 0 chr6 85365717 85365916 -97049326 - L1MA1 LINE L1 -4 7717 7518 9957 186 164 6 chr6 85365916 85368959 -97046283 - L1MA1 LINE L1 -705 7016 3441 6641 157 33 4 chr6 85368954 85370073 -97045169 - L1MA1 LINE L1 -4930 2635 1484 * 2112 303 114 33 chr6 85370511 85371632 -97043610 + L2 LINE L2 1365 2576 -738 418 311 219 5 chr6 85371640 85372125 -97043117 + L2 LINE L2 2701 3305 -8 791 247 54 46 chr6 85373410 85373669 -97041573 - MIR SINE MIR 0 262 2 230 247 341 0 chr6 85373757 85373842 -97041400 - MIR SINE MIR -62 200 87 273 263 83 53 chr6 85374289 85374422 -97040820 + L2 LINE L2 3164 3300 -13 205 326 0 0 chr6 85374710 85374756 -97040486 - L2 LINE L2 -371 2943 2898 379 350 81 18 chr6 85374807 85375030 -97040212 - L2 LINE L2 -536 2778 2542 452 317 24 24 chr6 85375755 85375878 -97039364 - MER5B DNA MER1_type -46 132 10 306 0 0 0 chr6 85376026 85376060 -97039182 + (TG)n Simple_repeat Simple_repeat 1 34 0 930 298 64 32 chr6 85376961 85377526 -97037716 - L2 LINE L2 0 3313 1487 241 185 37 25 chr6 85378652 85378733 -97036509 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 2178 116 0 0 chr6 85380145 85380446 -97034796 + AluSx SINE Alu 1 301 -11 206 313 0 71 chr6 85380698 85380797 -97034445 + MIR SINE MIR 98 189 -73 852 342 131 28 chr6 85380897 85381886 -97033356 + L2 LINE L2 1530 2620 -694 1661 290 81 16 chr6 85381958 85382513 -97032729 - MLT1E LTR MaLR 0 593 3 302 326 87 0 chr6 85382725 85382817 -97032425 + L2 LINE L2 3212 3311 -2 10792 156 33 40 chr6 85383695 85385713 -97029529 + Ricksha_c DNA DNA 21 2024 -22 191 167 24 24 chr6 85385744 85385786 -97029456 - L2 LINE L2 -557 2757 2716 252 184 20 0 chr6 85385892 85385941 -97029301 + AluSp SINE Alu 121 170 -133 1045 189 61 0 chr6 85385942 85386138 -97029104 + AluJb SINE Alu 102 309 -3 324 177 0 0 chr6 85386209 85386271 -97028971 + L1MA4 LINE L1 6031 6092 -208 2017 162 19 8 chr6 85386271 85386630 -97028612 - Ricksha_c DNA DNA -429 1617 1255 2106 107 0 7 chr6 85386632 85386943 -97028299 - AluY SINE Alu 0 309 1 567 335 63 26 chr6 85387160 85387587 -97027655 + L1MC4a LINE L1 4374 4816 -1330 561 328 117 19 chr6 85387609 85388021 -97027221 + LTR33A LTR ERVL 7 458 -65 323 164 33 98 chr6 85388095 85388217 -97027025 - L1MC/D LINE L1 -2378 5430 5317 333 0 0 0 chr6 85388253 85388290 -97026952 + (TA)n Simple_repeat Simple_repeat 1 37 0 2118 109 10 0 chr6 85388290 85388594 -97026648 - AluSx SINE Alu -2 310 4 21 36 0 0 chr6 85388597 85388625 -97026617 + AT_rich Low_complexity Low_complexity 1 28 0 377 326 106 15 chr6 85388689 85388962 -97026280 - L1MC/D LINE L1 -982 5164 4867 508 214 76 7 chr6 85388973 85389118 -97026124 - LTR33A LTR ERVL -11 512 358 471 287 88 35 chr6 85389118 85389379 -97025863 + L1MC4a LINE L1 5579 5853 -1955 342 0 0 0 chr6 85389938 85389976 -97025266 + (A)n Simple_repeat Simple_repeat 1 38 0 385 266 21 0 chr6 85390268 85390362 -97024880 - MER5A DNA MER1_type -85 104 9 2051 127 3 0 chr6 85392113 85392412 -97022830 - AluSg SINE Alu -10 300 1 510 262 112 5 chr6 85392540 85392688 -97022554 - MIR SINE MIR -65 143 33 548 236 32 0 chr6 85393651 85393774 -97021468 - MER94 DNA DNA -7 127 1 328 318 40 27 chr6 85393781 85393929 -97021313 + L2 LINE L2 3144 3293 -20 242 291 179 8 chr6 85394382 85394499 -97020743 + MIR SINE MIR 1 137 -125 348 287 19 9 chr6 85394959 85395067 -97020175 + GA-rich Low_complexity Low_complexity 3 111 0 180 26 26 51 chr6 85395170 85395209 -97020033 + (TA)n Simple_repeat Simple_repeat 2 39 0 1992 142 0 0 chr6 85395213 85395508 -97019734 - AluSx SINE Alu -15 297 3 303 169 0 0 chr6 85395551 85395616 -97019626 - L1PB4 LINE L1 0 6156 6092 288 280 30 20 chr6 85395671 85395771 -97019471 - MIR3 SINE MIR -49 159 59 272 308 169 46 chr6 85396344 85396604 -97018638 - L3 LINE CR1 -17 1560 1269 235 230 58 69 chr6 85397846 85397901 -97017341 - MER103 DNA DNA -3 163 108 2223 101 0 3 chr6 85397901 85398198 -97017044 + AluSx SINE Alu 2 297 -15 235 230 58 69 chr6 85398198 85398229 -97017013 - MER103 DNA DNA -58 108 78 25 0 0 0 chr6 85398603 85398628 -97016614 + AT_rich Low_complexity Low_complexity 1 25 0 1603 154 4 22 chr6 85398876 85399148 -97016094 - AluJb SINE Alu -45 267 1 23 0 0 0 chr6 85399580 85399603 -97015639 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 85399694 85399715 -97015527 + AT_rich Low_complexity Low_complexity 1 21 0 418 254 28 49 chr6 85399793 85399935 -97015307 + MIR SINE MIR 58 196 -66 1252 273 62 6 chr6 85399993 85400334 -97014908 + L3 LINE CR1 409 768 -809 304 197 40 0 chr6 85400699 85400775 -97014467 - L1MB4 LINE L1 0 6180 6102 265 186 0 0 chr6 85400897 85400940 -97014302 - MER5B DNA MER1_type 0 178 136 253 377 29 34 chr6 85400989 85401164 -97014078 + ERVL LTR ERVL 1406 1579 -3417 * 1904 311 72 81 chr6 85401159 85401706 -97013536 + ERVL LTR ERVL 1688 2239 -3181 214 250 34 80 chr6 85401706 85401794 -97013448 + L3 LINE CR1 471 554 -1023 1904 311 72 81 chr6 85401794 85402765 -97012477 + ERVL LTR ERVL 2239 3218 -2202 1739 173 3 28 chr6 85402765 85403077 -97012165 + AluJb SINE Alu 2 306 0 1698 179 44 25 chr6 85403077 85403441 -97011801 + THE1C LTR MaLR 5 375 0 1904 311 72 81 chr6 85403441 85403670 -97011572 + ERVL LTR ERVL 3216 3496 -1924 862 314 76 36 chr6 85403765 85404433 -97010809 + ERVL LTR ERVL 3358 4379 -1204 629 291 221 7 chr6 85405657 85405956 -97009286 + L2 LINE L2 90 452 -2862 190 329 117 22 chr6 85406024 85406161 -97009081 + L2 LINE L2 3159 3308 -5 227 340 76 8 chr6 85406185 85406423 -97008819 + L1ME LINE L1 5581 5834 -287 221 268 0 0 chr6 85406599 85406658 -97008584 + MIR SINE MIR 92 145 -63 189 309 0 88 chr6 85408426 85408494 -97006748 - L2 LINE L2 -78 3194 3133 3941 179 16 23 chr6 85408498 85409247 -97005995 - MER49 LTR ERV1 0 923 180 218 358 66 15 chr6 85409255 85409392 -97005850 + MIR3 SINE MIR 20 163 -45 620 345 30 0 chr6 85409491 85409723 -97005519 - MIR SINE MIR 0 262 24 200 312 13 13 chr6 85409760 85409837 -97005405 + CT-rich Low_complexity Low_complexity 5 81 0 398 296 107 41 chr6 85410369 85410714 -97004528 - L1M4 LINE L1 -522 6358 5991 275 300 133 13 chr6 85410759 85411015 -97004227 - L1M4 LINE L1 -1542 5306 5082 192 77 0 0 chr6 85411015 85411041 -97004201 + (TATG)n Simple_repeat Simple_repeat 4 29 0 275 300 133 13 chr6 85411041 85411257 -97003985 - L1M4 LINE L1 -1766 5082 4777 271 232 0 0 chr6 85411387 85411443 -97003799 - MLT2B3 LTR ERVL 0 520 465 230 254 34 25 chr6 85411493 85411611 -97003631 + (TATATG)n Simple_repeat Simple_repeat 6 124 0 2163 222 33 79 chr6 85411612 85412129 -97003113 - MLT2B3 LTR ERVL -51 497 3 27 29 0 0 chr6 85412372 85412406 -97002836 + AT_rich Low_complexity Low_complexity 1 34 0 248 244 37 12 chr6 85412723 85412805 -97002437 - L1M4 LINE L1 -4384 2465 2382 21 57 0 0 chr6 85412823 85412858 -97002384 + AT_rich Low_complexity Low_complexity 1 35 0 1203 298 76 58 chr6 85412942 85414114 -97001128 - L1M4 LINE L1 -4883 1955 763 2188 135 114 5 chr6 85415123 85415509 -96999733 - MSTA LTR MaLR 0 428 1 2840 147 4 2 chr6 85415509 85415964 -96999278 - MSTA-int LTR MaLR 0 1651 1196 1599 155 8 26 chr6 85416471 85416735 -96998507 + AluSq SINE Alu 2 260 -53 249 242 32 16 chr6 85417913 85417975 -96997267 + CT-rich Low_complexity Low_complexity 4 66 0 479 362 74 21 chr6 85417983 85418540 -96996702 - L2 LINE L2 0 3313 2728 387 0 0 0 chr6 85418617 85418660 -96996582 + (A)n Simple_repeat Simple_repeat 1 43 0 11377 46 6 0 chr6 85419011 85420421 -96994821 - L1P LINE L1 -1413 4733 3316 7165 43 11 2 chr6 85420421 85422013 -96993229 + L1PA5 LINE L1 4554 6154 0 243 125 0 0 chr6 85424402 85424442 -96990800 + (TG)n Simple_repeat Simple_repeat 1 40 0 276 308 92 23 chr6 85425262 85425392 -96989850 - L3 LINE CR1 -1192 385 247 218 136 91 23 chr6 85425484 85425528 -96989714 - L2 LINE L2 -3 3310 3264 207 171 49 0 chr6 85425500 85425541 -96989701 - MIR SINE MIR -16 246 204 * 245 261 171 0 chr6 85425716 85425804 -96989438 - L2 LINE L2 -10 3262 3160 2304 242 54 7 chr6 85427074 85427664 -96987578 + MLT1E2 LTR MaLR 9 626 0 221 292 0 0 chr6 85427664 85427712 -96987530 - L2 LINE L2 -475 2839 2792 2469 182 218 79 chr6 85427757 85428653 -96986589 + LTR28 LTR ERV1 1 1020 0 379 264 88 32 chr6 85428745 85428870 -96986372 + L2 LINE L2 3180 3311 -2 284 355 43 29 chr6 85429676 85429814 -96985428 - L2 LINE L2 0 3272 3133 22 0 0 0 chr6 85429822 85429844 -96985398 + AT_rich Low_complexity Low_complexity 1 22 0 971 65 73 0 chr6 85430428 85430551 -96984691 - AluSp/q SINE Alu -16 297 166 349 316 65 7 chr6 85431391 85431530 -96983712 + MLT1J2 LTR MaLR 67 213 -237 247 309 79 22 chr6 85431559 85431698 -96983544 + MLT1J2 LTR MaLR 287 433 -17 225 325 21 32 chr6 85433641 85433829 -96981413 + L1MDb LINE L1 1118 1303 -5106 331 247 35 12 chr6 85433840 85433925 -96981317 + MLT1J1 LTR MaLR 68 154 -292 7310 42 2 0 chr6 85434530 85435838 -96979404 + L1PA4 LINE L1 4846 6155 0 593 158 0 158 chr6 85435885 85436056 -96979186 + L1MA2 LINE L1 518 661 -6904 * 5823 210 60 5 chr6 85436028 85437151 -96978091 + L1M1 LINE L1 220 1403 -6162 321 264 81 0 chr6 85437141 85437228 -96978014 - L1M1 LINE L1 -6199 1366 1273 * 306 232 101 0 chr6 85437328 85437397 -96977845 - L1M1 LINE L1 -6219 1346 1271 * 581 145 43 0 chr6 85437394 85437511 -96977731 + L1M1 LINE L1 2380 2501 -5064 4155 133 10 45 chr6 85437513 85438309 -96976933 + L1M1 LINE L1 2626 3393 -4172 947 144 19 0 chr6 85438310 85438516 -96976726 + L1MA2 LINE L1 1863 2122 -5443 * 13793 174 29 18 chr6 85438509 85440005 -96975237 + L1MA2 LINE L1 3390 4868 -2855 2389 103 0 0 chr6 85440005 85440316 -96974926 + AluY SINE Alu 1 311 0 13793 174 29 18 chr6 85440316 85442419 -96972823 + L1MA2 LINE L1 4868 7047 -676 1911 124 3 51 chr6 85442419 85442734 -96972508 + AluSq SINE Alu 1 300 -13 13793 174 29 18 chr6 85442734 85443419 -96971823 + L1MA2 LINE L1 7047 7723 0 213 228 260 71 chr6 85443542 85443669 -96971573 + MIR SINE MIR 106 256 -6 396 274 13 72 chr6 85444146 85444299 -96970943 - MLT1F LTR MaLR -393 149 6 314 289 67 110 chr6 85444308 85444699 -96970543 - MLT1F-int LTR MaLR -4 1367 994 284 297 47 23 chr6 85444816 85444944 -96970298 - MLT1F-int LTR MaLR -485 886 756 238 180 0 0 chr6 85445186 85445236 -96970006 - L1MA9 LINE L1 -38 6274 6225 1459 277 11 25 chr6 85445238 85445599 -96969643 - MLT1F LTR MaLR -81 461 106 570 171 0 0 chr6 85445600 85445717 -96969525 - L1 LINE L1 -2630 3516 3400 1806 153 71 50 chr6 85445719 85446157 -96969085 + L1MA9 LINE L1 5842 6288 -24 602 130 10 10 chr6 85446224 85446324 -96968918 - L1MA8 LINE L1 -664 5627 5528 * 3063 153 77 14 chr6 85446320 85446940 -96968302 + L1MA8 LINE L1 5626 6284 -7 292 225 110 58 chr6 85446976 85447149 -96968093 + L1M4 LINE L1 4483 4664 -1482 1817 181 0 7 chr6 85447986 85448289 -96966953 - AluJb SINE Alu -11 301 1 277 360 56 51 chr6 85448752 85448966 -96966276 - L2 LINE L2 -18 3254 3040 2047 150 36 28 chr6 85449283 85449644 -96965598 - THE1B LTR MaLR 0 364 1 10905 122 5 3 chr6 85449644 85451221 -96964021 - THE1B-int LTR MaLR 0 1580 1 2021 154 39 28 chr6 85451221 85451579 -96963663 - THE1B LTR MaLR 0 364 3 305 356 79 11 chr6 85451829 85452006 -96963236 - L2 LINE L2 -977 2337 2149 1115 230 38 9 chr6 85452485 85452749 -96962493 - MLT1D LTR MaLR 0 505 252 1044 137 38 75 chr6 85452799 85453011 -96962231 + THE1C LTR MaLR 3 206 -169 1937 148 32 48 chr6 85453013 85453390 -96961852 + THE1C LTR MaLR 5 375 0 660 211 50 142 chr6 85453414 85453675 -96961567 - MLT1D LTR MaLR -268 237 1 270 0 0 0 chr6 85454231 85454261 -96960981 + (TG)n Simple_repeat Simple_repeat 2 31 0 480 18 0 0 chr6 85454262 85454319 -96960923 + (GA)n Simple_repeat Simple_repeat 2 58 0 206 153 0 102 chr6 85455323 85455382 -96959860 + MIR SINE MIR 131 183 -79 21 57 0 0 chr6 85455920 85455955 -96959287 + AT_rich Low_complexity Low_complexity 1 35 0 21 95 0 0 chr6 85456492 85456555 -96958687 + AT_rich Low_complexity Low_complexity 1 63 0 292 278 56 0 chr6 85457917 85458007 -96957235 + MIR SINE MIR 79 173 -89 916 319 62 27 chr6 85458771 85459172 -96956070 - LTR16A LTR ERVL -19 431 17 300 27 0 0 chr6 85460033 85460070 -96955172 + (TG)n Simple_repeat Simple_repeat 2 38 0 262 302 73 73 chr6 85460227 85460419 -96954823 + MIR SINE MIR 51 242 -20 1645 176 35 0 chr6 85460514 85460826 -96954416 - L1PA15 LINE L1 -1 6164 5842 632 315 145 3 chr6 85461157 85461509 -96953733 + L1MC/D LINE L1 5402 5803 -2005 22 0 0 0 chr6 85461582 85461604 -96953638 + AT_rich Low_complexity Low_complexity 1 22 0 1581 204 11 62 chr6 85461697 85462097 -96953145 + MER67C LTR ERV1 1 403 -244 252 0 0 0 chr6 85463328 85463356 -96951886 + (T)n Simple_repeat Simple_repeat 1 28 0 473 293 171 0 chr6 85463464 85463604 -96951638 + MER5A DNA MER1_type 12 175 -14 1812 136 6 83 chr6 85464275 85464613 -96950629 + AluSx SINE Alu 1 312 0 182 114 0 29 chr6 85464617 85464652 -96950590 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 15418 220 21 9 chr6 85464695 85469627 -96945615 - L1PA15 LINE L1 -1 7602 2626 266 244 0 90 chr6 85469632 85469710 -96945532 + MLT1F1 LTR MaLR 56 126 -441 1981 216 40 36 chr6 85469726 85470281 -96944961 + L1MC3 LINE L1 7208 7764 -21 765 218 122 112 chr6 85470308 85470583 -96944659 + L1MEc LINE L1 1639 1910 -4486 1143 247 63 21 chr6 85470583 85471008 -96944234 - LTR47B LTR ERVL 0 443 1 765 218 122 112 chr6 85471008 85471488 -96943754 + L1MEc LINE L1 1910 2401 -3995 642 249 27 11 chr6 85471468 85471653 -96943589 + L1MC3 LINE L1 7022 7209 -576 * 496 184 17 17 chr6 85471680 85471859 -96943383 + (TA)n Simple_repeat Simple_repeat 2 180 0 27 29 0 0 chr6 85471893 85471927 -96943315 + AT_rich Low_complexity Low_complexity 1 34 0 456 198 11 0 chr6 85471933 85472024 -96943218 + LTR47B LTR ERVL 32 123 -320 24 53 0 0 chr6 85472035 85472073 -96943169 + AT_rich Low_complexity Low_complexity 1 38 0 1673 164 17 109 chr6 85472073 85472487 -96942755 + MLT1B LTR MaLR 15 390 0 1742 275 65 1 chr6 85472488 85473149 -96942093 + L1MEc LINE L1 2407 3109 -3106 297 192 14 27 chr6 85473298 85473371 -96941871 - L1P LINE L1 -2700 3446 3375 254 173 55 73 chr6 85473366 85473476 -96941766 - L1 LINE L1 -2905 3305 3198 * 4637 197 17 12 chr6 85473475 85474470 -96940772 + L1MEc LINE L1 3504 4503 -1712 * 13607 177 23 13 chr6 85474464 85476620 -96938622 + L1MA1 LINE L1 3251 5383 -2338 2205 105 0 19 chr6 85476620 85476934 -96938308 + AluSp SINE Alu 1 308 -5 13607 177 23 13 chr6 85476934 85478905 -96936337 + L1MA1 LINE L1 5383 7557 -164 1194 189 40 25 chr6 85478920 85479243 -96935999 - L1 LINE L1 -4694 1447 1120 41 48 0 0 chr6 85479267 85479329 -96935913 + AT_rich Low_complexity Low_complexity 1 62 0 342 285 267 6 chr6 85479701 85479866 -96935376 - L2 LINE L2 -676 2638 2431 2493 283 79 9 chr6 85479913 85480824 -96934418 - L2 LINE L2 -1183 2131 1157 1151 246 19 22 chr6 85480827 85481095 -96934147 + MLT1C LTR MaLR 198 464 -3 2201 71 0 4 chr6 85481381 85481713 -96933529 - AluY SINE Alu 0 331 1 25 0 0 0 chr6 85482347 85482372 -96932870 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 85482415 85482438 -96932804 + AT_rich Low_complexity Low_complexity 1 23 0 2178 106 7 0 chr6 85483069 85483370 -96931872 - AluSq SINE Alu -10 303 1 1011 139 50 11 chr6 85484305 85484485 -96930757 + L1MA8 LINE L1 6053 6239 -52 1930 120 0 71 chr6 85484749 85485074 -96930168 + AluSx SINE Alu 1 302 -10 2248 108 0 6 chr6 85485388 85485702 -96929540 - AluSx SINE Alu 0 312 1 224 274 12 24 chr6 85485784 85485868 -96929374 + GA-rich Low_complexity Low_complexity 3 85 0 8290 171 12 15 chr6 85486025 85487583 -96927659 + L1PA13 LINE L1 3511 5063 -1083 1644 117 12 17 chr6 85487583 85487957 -96927285 - LTR9B LTR ERV1 0 644 174 2099 122 0 0 chr6 85487957 85488244 -96926998 - AluSg SINE Alu -3 307 21 1644 117 12 17 chr6 85488244 85488260 -96926982 - LTR9B LTR ERV1 -470 174 159 1164 91 69 0 chr6 85488286 85488461 -96926781 - LTR9B LTR ERV1 -457 187 1 5758 124 51 2 chr6 85488461 85489520 -96925722 + L1PA13 LINE L1 5060 6163 0 1470 201 14 21 chr6 85489849 85490128 -96925114 + AluJo SINE Alu 1 277 -35 2178 108 3 0 chr6 85490452 85490748 -96924494 - AluSp SINE Alu -16 297 1 510 131 60 0 chr6 85491055 85491139 -96924103 + MLT2B1 LTR ERVL 1 89 -431 1542 264 21 8 chr6 85491970 85492357 -96922885 + MLT2B1 LTR ERVL 129 520 0 5702 159 48 21 chr6 85493311 85494661 -96920581 - L1MC1 LINE L1 -16 6317 4945 22 0 0 0 chr6 85495198 85495220 -96920022 + AT_rich Low_complexity Low_complexity 1 22 0 346 278 122 39 chr6 85495376 85495581 -96919661 - L2 LINE L2 0 3313 3092 278 397 91 0 chr6 85495652 85495871 -96919371 - L2 LINE L2 -340 2974 2736 242 330 94 35 chr6 85495902 85496105 -96919137 - L2 LINE L2 -1756 1558 1344 434 265 112 61 chr6 85496813 85496951 -96918291 - L1ME LINE L1 -298 5823 5693 1126 312 128 36 chr6 85496951 85497583 -96917659 - MER115 DNA AcHobo 0 693 4 434 265 112 61 chr6 85497583 85497896 -96917346 - L1ME LINE L1 -428 5693 5332 1660 236 25 0 chr6 85497897 85498253 -96916989 - MLT1A1 LTR MaLR 0 365 1 558 262 126 65 chr6 85498301 85498744 -96916498 - L1ME LINE L1 -2974 3172 2703 654 264 12 12 chr6 85499893 85500060 -96915182 - MER20 DNA MER1_type -52 167 1 23 0 0 0 chr6 85502126 85502149 -96913093 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr6 85502215 85502251 -96912991 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr6 85502388 85502416 -96912826 + AT_rich Low_complexity Low_complexity 1 28 0 1391 193 3 51 chr6 85502846 85503157 -96912085 + AluJo SINE Alu 1 296 -16 191 289 92 0 chr6 85503165 85503241 -96912001 + MIR SINE MIR 118 200 -62 255 323 58 109 chr6 85503326 85503673 -96911569 + L2 LINE L2 2943 3271 -1 340 329 86 0 chr6 85504495 85504647 -96910595 + MIR SINE MIR 70 234 -28 494 278 68 6 chr6 85504780 85504956 -96910286 - MLT1L LTR MaLR -2 613 427 360 308 15 8 chr6 85505129 85505259 -96909983 + CT-rich Low_complexity Low_complexity 4 134 0 278 327 88 0 chr6 85505260 85505373 -96909869 - L2 LINE L2 0 3313 3191 495 228 29 37 chr6 85506447 85506583 -96908659 - MIR SINE MIR -49 213 79 1063 234 31 73 chr6 85507909 85508290 -96906952 - MLT1A2 LTR MaLR -1 373 9 2165 106 0 0 chr6 85508310 85508641 -96906601 - AluSx SINE Alu 0 331 1 360 0 0 0 chr6 85508710 85508750 -96906492 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2695 15 0 21 chr6 85508751 85509076 -96906166 - L1PA4 LINE L1 -3 6152 5835 2696 29 3 0 chr6 85510193 85510501 -96904741 + AluY SINE Alu 1 309 -2 1392 220 111 31 chr6 85512316 85512729 -96902513 - MLT1D LTR MaLR -59 446 1 21 0 0 0 chr6 85513860 85513881 -96901361 + AT_rich Low_complexity Low_complexity 1 21 0 603 328 74 6 chr6 85515441 85515792 -96899450 + HAL1 LINE L1 1 375 -2132 570 284 193 16 chr6 85515929 85516235 -96899007 + L2 LINE L2 207 566 -2748 598 154 51 8 chr6 85516249 85516366 -96898876 + MLT1D LTR MaLR 23 144 -361 441 204 13 8 chr6 85516402 85516556 -96898686 + MLT1D LTR MaLR 319 505 0 384 296 8 40 chr6 85516567 85516692 -96898550 + L2 LINE L2 578 698 -2616 560 143 10 0 chr6 85516739 85516837 -96898405 + THE1C LTR MaLR 184 282 -93 964 314 85 35 chr6 85516842 85517362 -96897880 + L2 LINE L2 757 1302 -2012 237 390 0 0 chr6 85517391 85517468 -96897774 + L2 LINE L2 3169 3245 -27 193 325 52 0 chr6 85517504 85517581 -96897661 + L2 LINE L2 1329 1409 -1905 342 187 0 130 chr6 85517594 85517717 -96897525 + L1ME LINE L1 4824 4930 -1216 808 246 65 7 chr6 85517725 85518001 -96897241 + L1ME LINE L1 5011 5302 -844 411 207 198 52 chr6 85518021 85518042 -96897200 - FLAM_C SINE Alu -169 133 116 2706 105 0 5 chr6 85518042 85518415 -96896827 - THE1C LTR MaLR -4 371 1 9093 128 45 43 chr6 85518415 85519991 -96895251 - THE1C-int LTR MaLR 0 1580 2 2451 120 8 8 chr6 85519992 85520367 -96894875 - THE1C LTR MaLR 0 375 1 411 207 198 52 chr6 85520367 85520458 -96894784 - FLAM_C SINE Alu -185 117 1 1286 260 80 7 chr6 85520486 85520897 -96894345 + L1ME LINE L1 5350 5790 -376 234 348 25 25 chr6 85520911 85521029 -96894213 - MIR SINE MIR -109 153 36 1389 278 120 43 chr6 85521139 85522143 -96893099 - L2 LINE L2 0 3313 2167 2086 144 28 3 chr6 85522145 85522506 -96892736 + L1MA8 LINE L1 5911 6280 -11 482 289 169 32 chr6 85522530 85522995 -96892247 + L2 LINE L2 2721 3305 -8 214 263 26 79 chr6 85523004 85523118 -96892124 - MIR SINE MIR -96 166 59 198 0 0 0 chr6 85523253 85523275 -96891967 + (A)n Simple_repeat Simple_repeat 1 22 0 27 73 0 0 chr6 85525025 85525080 -96890162 + AT_rich Low_complexity Low_complexity 1 55 0 249 190 30 0 chr6 85525080 85525180 -96890062 + (TA)n Simple_repeat Simple_repeat 2 104 0 2272 84 3 7 chr6 85526496 85526793 -96888449 + AluY SINE Alu 1 296 -15 228 67 0 0 chr6 85526960 85526990 -96888252 + (TG)n Simple_repeat Simple_repeat 2 31 0 2551 48 0 0 chr6 85527313 85527606 -96887636 + AluY SINE Alu 3 295 -16 25 31 0 0 chr6 85527908 85527940 -96887302 + AT_rich Low_complexity Low_complexity 1 32 0 366 296 154 50 chr6 85528093 85528313 -96886929 - MIR SINE MIR -10 252 10 1854 155 4 0 chr6 85530344 85530622 -96884620 + AluSx SINE Alu 4 282 -30 43954 41 3 1 chr6 85530708 85536845 -96878397 + L1PA4 LINE L1 2 6155 0 181 28 0 83 chr6 85536864 85536900 -96878342 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 198 0 0 0 chr6 85537313 85537335 -96877907 + (T)n Simple_repeat Simple_repeat 1 22 0 1481 202 10 27 chr6 85537798 85538090 -96877152 + AluJo SINE Alu 3 289 -23 2126 124 3 34 chr6 85538556 85538878 -96876364 + AluSx SINE Alu 1 312 0 30 45 0 0 chr6 85538913 85538957 -96876285 + AT_rich Low_complexity Low_complexity 1 44 0 565 361 98 11 chr6 85538994 85539443 -96875799 - L2 LINE L2 -1 3312 2825 255 61 0 0 chr6 85539600 85539633 -96875609 + (TG)n Simple_repeat Simple_repeat 2 34 0 410 329 18 90 chr6 85539646 85539923 -96875319 + MLT1I LTR MaLR 44 300 -109 293 267 50 40 chr6 85540214 85540315 -96874927 - MLT1I LTR MaLR -56 353 252 23 33 0 0 chr6 85540316 85540346 -96874896 + AT_rich Low_complexity Low_complexity 1 30 0 1479 246 52 33 chr6 85540360 85540997 -96874245 + L1ME4a LINE L1 2573 3221 -2925 227 216 20 0 chr6 85541000 85541051 -96874191 - MLT1A1 LTR MaLR 0 365 314 * 351 167 0 0 chr6 85541048 85541102 -96874140 - Alu SINE Alu -11 291 238 810 193 47 0 chr6 85541102 85541252 -96873990 - MLT1A1 LTR MaLR -37 328 172 2181 220 112 25 chr6 85541283 85541513 -96873729 - MER50 LTR ERV1 0 734 525 2535 55 0 7 chr6 85541513 85541823 -96873419 - AluY SINE Alu -3 308 1 2181 220 112 25 chr6 85541823 85542259 -96872983 - MER50 LTR ERV1 -209 525 10 600 294 0 0 chr6 85542264 85542407 -96872835 - MLT1A1 LTR MaLR -222 143 1 5508 226 46 59 chr6 85542407 85543895 -96871347 - MLT1A1-int LTR MaLR 0 1735 267 273 234 48 57 chr6 85543942 85544066 -96871176 - LTR47B LTR ERVL -43 400 278 602 140 9 26 chr6 85544143 85544257 -96870985 - MLT1A1 LTR MaLR -253 112 1 186 143 0 0 chr6 85544282 85544317 -96870925 + (GA)n Simple_repeat Simple_repeat 1 35 0 701 257 94 14 chr6 85544366 85544728 -96870514 + L1ME4a LINE L1 3658 4048 -2098 23 0 0 0 chr6 85545222 85545245 -96869997 + AT_rich Low_complexity Low_complexity 1 23 0 429 298 125 20 chr6 85545446 85545942 -96869300 + L1ME4a LINE L1 5572 6119 -2 291 336 230 0 chr6 85546796 85547013 -96868229 + L2 LINE L2 2986 3252 -20 437 307 21 29 chr6 85547164 85547370 -96867872 + MIR SINE MIR 3 206 -56 205 152 0 0 chr6 85547667 85547700 -96867542 + CT-rich Low_complexity Low_complexity 2 34 0 238 280 84 63 chr6 85549865 85550008 -96865234 - L2 LINE L2 -1 3271 3126 331 291 158 19 chr6 85550051 85550133 -96865109 - MIR SINE MIR -3 259 190 548 89 13 0 chr6 85550133 85550212 -96865030 + MADE1 DNA Mariner 1 80 0 331 291 158 19 chr6 85550212 85550287 -96864955 - MIR SINE MIR -72 190 80 324 267 0 23 chr6 85552172 85552258 -96862984 + GA-rich Low_complexity Low_complexity 4 87 0 1112 271 104 44 chr6 85552272 85553095 -96862147 - HAL1 LINE L1 -732 1775 903 256 333 87 14 chr6 85553155 85553293 -96861949 - HAL1 LINE L1 -2019 488 341 185 300 0 0 chr6 85553493 85553553 -96861689 + L2 LINE L2 2863 2922 -350 702 169 15 8 chr6 85553651 85553781 -96861461 + FLAM_C SINE Alu 1 131 -12 1172 102 38 16 chr6 85554952 85555138 -96860104 + L1PA15 LINE L1 5972 6161 -4 395 380 56 12 chr6 85555519 85555769 -96859473 - MIR SINE MIR 0 262 2 183 42 0 0 chr6 85556267 85556291 -96858951 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 338 273 39 16 chr6 85556366 85556494 -96858748 + MIR SINE MIR 132 262 0 440 162 27 45 chr6 85556533 85556644 -96858598 + MER110A LTR ERV1 68 176 -292 780 263 113 34 chr6 85556706 85556999 -96858243 + MER110 LTR ERV1 176 491 0 1898 226 94 17 chr6 85557038 85557579 -96857663 + MER119 DNA MER1_type 1 583 0 1194 233 91 21 chr6 85557796 85558135 -96857107 - MLT1A1 LTR MaLR -2 363 1 337 254 14 0 chr6 85558189 85558260 -96856982 - L2 LINE L2 0 3313 3242 1983 34 17 0 chr6 85558828 85559066 -96856176 - L1PA3 LINE L1 -3 6152 5911 9065 245 52 26 chr6 85560911 85566087 -96849155 - L1PA15 LINE L1 -1 6815 1317 2012 272 34 19 chr6 85566415 85566996 -96848246 - L1PA15 LINE L1 -6196 591 2 2220 207 27 15 chr6 85567500 85568022 -96847220 + L1MB4 LINE L1 5636 6163 -17 207 209 0 0 chr6 85569099 85569142 -96846100 + (TA)n Simple_repeat Simple_repeat 2 44 0 331 371 93 7 chr6 85569228 85569379 -96845863 - L2 LINE L2 -1 3271 3108 1427 139 224 23 chr6 85570107 85570410 -96844832 + THE1B LTR MaLR 1 364 0 11412 103 6 1 chr6 85570410 85571981 -96843261 + THE1B-int LTR MaLR 1 1580 0 2131 132 76 20 chr6 85571981 85572323 -96842919 + THE1B LTR MaLR 1 361 -3 404 368 189 8 chr6 85572499 85573384 -96841858 - L2 LINE L2 -467 2847 1803 200 169 0 17 chr6 85573761 85573820 -96841422 + GA-rich Low_complexity Low_complexity 2 59 0 21 0 0 0 chr6 85573952 85573973 -96841269 + AT_rich Low_complexity Low_complexity 1 21 0 303 400 46 0 chr6 85575034 85575209 -96840033 + HAL1 LINE L1 1651 1833 -674 422 255 58 55 chr6 85575430 85575775 -96839467 - L1MC5 LINE L1 -35 7926 7581 270 226 57 0 chr6 85576060 85576113 -96839129 + L2 LINE L2 3250 3305 -8 309 241 207 17 chr6 85576263 85576379 -96838863 + L2 LINE L2 3175 3312 -1 334 271 133 26 chr6 85577074 85577225 -96838017 + MIR SINE MIR 25 191 -71 315 0 0 0 chr6 85577364 85577399 -96837843 + (CA)n Simple_repeat Simple_repeat 2 36 0 300 262 9 105 chr6 85577551 85577697 -96837545 + LTR16A1 LTR ERVL 265 387 -70 2262 94 7 3 chr6 85577697 85577994 -96837248 - AluY SINE Alu -13 298 1 300 262 9 105 chr6 85577994 85578057 -96837185 + LTR16A1 LTR ERVL 387 454 -3 909 254 96 14 chr6 85578508 85578799 -96836443 - MER46C DNA MER2_type -22 316 2 646 250 22 0 chr6 85579226 85579362 -96835880 - MIR3 SINE MIR -26 182 44 389 217 0 94 chr6 85581042 85581148 -96834094 + L2 LINE L2 3213 3308 -5 255 250 0 0 chr6 85581455 85581527 -96833715 - LTR41 LTR ERVL -6 767 696 513 274 28 17 chr6 85582053 85582232 -96833010 - LTR41 LTR ERVL -592 181 1 1425 173 32 43 chr6 85585648 85585925 -96829317 - AluJo SINE Alu 0 312 39 402 286 89 30 chr6 85586364 85586567 -96828675 - MIR SINE MIR -1 261 47 23 0 0 0 chr6 85587009 85587032 -96828210 + AT_rich Low_complexity Low_complexity 1 23 0 306 206 196 0 chr6 85588760 85588852 -96826390 + MIR SINE MIR 34 143 -119 241 370 25 8 chr6 85589021 85589140 -96826102 + MIR SINE MIR 88 208 -54 364 216 31 62 chr6 85589932 85590029 -96825213 - MER5A DNA MER1_type -85 104 11 213 324 0 0 chr6 85590393 85590461 -96824781 + MIR3 SINE MIR 135 202 -6 213 324 0 0 chr6 85590814 85590882 -96824360 + MIR3 SINE MIR 135 202 -6 197 330 77 81 chr6 85591239 85591448 -96823794 + L2 LINE L2 3088 3295 -18 375 225 45 63 chr6 85592584 85592695 -96822547 + MIR SINE MIR 6 114 -148 413 310 94 67 chr6 85592993 85593557 -96821685 + L2 LINE L2 2722 3307 -6 230 310 0 14 chr6 85594067 85594138 -96821104 + MIR SINE MIR 149 218 -44 23 33 0 0 chr6 85594864 85594894 -96820348 + AT_rich Low_complexity Low_complexity 1 30 0 252 0 0 0 chr6 85595008 85595036 -96820206 + (CA)n Simple_repeat Simple_repeat 2 29 0 931 185 113 0 chr6 85595819 85596014 -96819228 - MER20 DNA MER1_type -2 217 1 2006 151 10 13 chr6 85596095 85596406 -96818836 + AluSx SINE Alu 3 312 0 408 317 150 0 chr6 85596666 85596846 -96818396 - L3 LINE CR1 -9 1568 1362 491 299 90 52 chr6 85596849 85597117 -96818125 - L3 LINE CR1 -325 1252 975 209 276 141 45 chr6 85597265 85597421 -96817821 - L3 LINE CR1 -592 985 815 203 344 98 16 chr6 85597589 85597711 -96817531 + L3 LINE CR1 1358 1489 -88 252 135 0 0 chr6 85598065 85598102 -96817140 - Alu SINE Alu -249 53 17 2343 82 0 31 chr6 85598313 85598631 -96816611 + AluY SINE Alu 1 308 -3 21 82 0 0 chr6 85598756 85598805 -96816437 + AT_rich Low_complexity Low_complexity 1 49 0 270 386 24 31 chr6 85598890 85599017 -96816225 - L2 LINE L2 -161 3111 2986 242 344 11 0 chr6 85599992 85600082 -96815160 - MIR SINE MIR 0 262 172 * 761 322 93 70 chr6 85600066 85601410 -96813832 - L2 LINE L2 -1 3312 1932 959 285 115 40 chr6 85601710 85602359 -96812883 - L2 LINE L2 0 3313 2608 1194 212 69 63 chr6 85602537 85602900 -96812342 + MLT1A1 LTR MaLR 1 365 0 2039 174 16 0 chr6 85604294 85604668 -96810574 - L1PA16 LINE L1 -2 6164 5785 242 250 0 0 chr6 85604810 85604894 -96810348 + (CAGA)n Simple_repeat Simple_repeat 4 87 0 1695 184 3 7 chr6 85604895 85605178 -96810064 - AluJo SINE Alu -30 282 1 26 0 0 0 chr6 85605178 85605204 -96810038 + AT_rich Low_complexity Low_complexity 1 26 0 7872 13 0 0 chr6 85606449 85607584 -96807658 - L1PA2 LINE L1 -3 6152 5018 211 352 149 29 chr6 85608100 85608543 -96806699 - L2 LINE L2 -482 2832 2337 474 269 173 10 chr6 85609118 85609326 -96805916 + MIR SINE MIR 21 262 0 2990 111 51 2 chr6 85609693 85609806 -96805436 + L1PB4 LINE L1 5663 5769 -387 236 30 30 0 chr6 85609806 85609839 -96805403 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 351 0 0 0 chr6 85609838 85609877 -96805365 + (TG)n Simple_repeat Simple_repeat 2 40 0 2990 111 51 2 chr6 85609839 85610230 -96805012 + L1PB4 LINE L1 5769 6152 -4 5800 90 24 12 chr6 85610653 85611556 -96803686 - L1PA12 LINE L1 0 6168 5255 2774 161 18 14 chr6 85611603 85612100 -96803142 - MER49 LTR ERV1 -424 499 1 1476 180 57 13 chr6 85612101 85612401 -96802841 - MER49-int LTR ERV1 0 6758 6446 782 238 47 21 chr6 85612403 85612596 -96802646 - MER49-int LTR ERV1 -622 6136 5939 1692 161 7 7 chr6 85612723 85612996 -96802246 + MER49 LTR ERV1 1 273 -650 2814 172 8 8 chr6 85612997 85613479 -96801763 + MER49 LTR ERV1 442 923 0 287 182 221 13 chr6 85613488 85613565 -96801677 + MER49 LTR ERV1 802 894 -29 236 216 0 136 chr6 85613590 85613678 -96801564 + MIR SINE MIR 172 247 -15 1983 139 10 0 chr6 85613844 85614153 -96801089 - AluSx SINE Alu 0 312 1 294 73 0 0 chr6 85614531 85614572 -96800670 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr6 85614696 85614720 -96800522 + (A)n Simple_repeat Simple_repeat 1 24 0 24 67 0 0 chr6 85614986 85615031 -96800211 + AT_rich Low_complexity Low_complexity 1 45 0 5656 117 19 8 chr6 85615837 85616908 -96798334 - L1PA15 LINE L1 -54 6111 5026 282 95 0 0 chr6 85617313 85617355 -96797887 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 81 108 0 chr6 85617362 85617399 -96797843 + L1P4 LINE L1 5834 5874 -291 234 0 0 0 chr6 85617414 85617440 -96797802 + (TA)n Simple_repeat Simple_repeat 1 26 0 255 226 0 32 chr6 85617447 85617540 -96797702 - L1MC4 LINE L1 -1337 6705 6616 * 268 264 0 11 chr6 85617463 85617554 -96797688 + L1MC4 LINE L1 6614 6703 -1339 300 234 14 35 chr6 85617564 85617709 -96797533 + (TA)n Simple_repeat Simple_repeat 1 142 0 2052 164 31 8 chr6 85618102 85618493 -96796749 + L1MA8 LINE L1 5722 6121 -170 262 160 0 0 chr6 85618571 85618621 -96796621 + L1MB1 LINE L1 6104 6153 -15 4661 150 41 20 chr6 85618622 85618757 -96796485 - L1PB4 LINE L1 -6 6150 6019 1751 145 184 11 chr6 85618757 85619122 -96796120 - MSTA LTR MaLR 0 428 1 8786 143 22 39 chr6 85619122 85620728 -96794514 - MSTA-int LTR MaLR 0 1580 3 1852 158 131 13 chr6 85620733 85621114 -96794128 - MSTA LTR MaLR -2 426 1 4661 150 41 20 chr6 85621114 85621905 -96793337 - L1PB4 LINE L1 -140 6016 5200 333 276 0 16 chr6 85623031 85623158 -96792084 + (TA)n Simple_repeat Simple_repeat 2 126 0 346 297 133 8 chr6 85624139 85624267 -96790975 + MIR SINE MIR 8 151 -111 265 283 109 11 chr6 85624395 85624487 -96790755 - MIR SINE MIR -133 129 29 1320 177 37 43 chr6 85625618 85625918 -96789324 + L1MA8 LINE L1 5893 6190 -101 237 211 84 70 chr6 85625992 85626063 -96789179 + L2 LINE L2 3150 3221 -51 198 0 0 0 chr6 85627643 85627665 -96787577 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 180 152 0 0 chr6 85628252 85628285 -96786957 + A-rich Low_complexity Low_complexity 3 35 0 183 338 0 99 chr6 85629651 85629722 -96785520 + L3b LINE CR1 1502 1565 -18 192 40 0 0 chr6 85629795 85629820 -96785422 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1148 269 47 27 chr6 85630106 85630511 -96784731 + L1MB1 LINE L1 11 423 -5532 4414 185 52 68 chr6 85630532 85632464 -96782778 + L1MB1 LINE L1 3879 5789 -288 8808 188 11 17 chr6 85632476 85632554 -96782688 - MSTA-int LTR MaLR -5 1646 1569 2506 53 3 0 chr6 85632554 85632853 -96782389 - AluY SINE Alu -11 300 1 8808 188 11 17 chr6 85632853 85634425 -96780817 - MSTA-int LTR MaLR -82 1569 5 2216 167 57 41 chr6 85634429 85634460 -96780782 - MSTA LTR MaLR 0 428 399 7328 85 7 6 chr6 85634460 85636289 -96778953 + L1PA6 LINE L1 4316 6153 -1 2216 167 57 41 chr6 85636289 85636300 -96778942 - MSTA LTR MaLR -29 399 390 2147 106 7 0 chr6 85636300 85636583 -96778659 + AluSc SINE Alu 1 285 -24 2216 167 57 41 chr6 85636583 85636958 -96778284 - MSTA LTR MaLR -38 390 3 26 0 0 0 chr6 85637203 85637229 -96778013 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr6 85638282 85638320 -96776922 + AT_rich Low_complexity Low_complexity 1 38 0 5122 129 46 64 chr6 85638332 85639376 -96775866 - L1MA4 LINE L1 -22 6278 5254 305 109 16 0 chr6 85639923 85639987 -96775255 + (TA)n Simple_repeat Simple_repeat 2 66 0 211 258 0 0 chr6 85640005 85640071 -96775171 + (TG)n Simple_repeat Simple_repeat 1 66 0 334 381 8 0 chr6 85640472 85640590 -96774652 + L2 LINE L2 3150 3268 -4 180 213 85 0 chr6 85640688 85640735 -96774507 - MIR SINE MIR -11 251 201 373 280 112 14 chr6 85640740 85640883 -96774359 - MER5A DNA MER1_type 0 189 33 428 341 161 18 chr6 85642410 85643002 -96772240 - L2 LINE L2 -4 3309 2631 1047 190 54 0 chr6 85643066 85643287 -96771955 - MER67C LTR ERV1 0 710 478 1738 180 50 0 chr6 85643298 85643621 -96771621 + MER47A DNA MER2_type 27 365 -1 2469 166 50 11 chr6 85643622 85644080 -96771162 - MER67C LTR ERV1 -231 479 4 658 255 138 15 chr6 85644459 85645028 -96770214 + LTR50 LTR ERVL 1 768 -27 322 282 65 32 chr6 85645744 85645868 -96769374 + L2 LINE L2 3186 3313 0 919 251 65 9 chr6 85646247 85646478 -96768764 + MIR SINE MIR 3 246 -16 359 85 7 0 chr6 85646589 85646645 -96768597 + AluSc SINE Alu 239 287 -12 773 289 109 90 chr6 85647012 85647624 -96767618 - MER45C DNA AcHobo -326 627 4 291 320 85 51 chr6 85647669 85647963 -96767279 - L2 LINE L2 -1485 1829 1526 340 289 25 8 chr6 85648709 85648830 -96766412 + CT-rich Low_complexity Low_complexity 2 124 0 39 50 0 0 chr6 85648918 85648978 -96766264 + AT_rich Low_complexity Low_complexity 1 60 0 7497 105 9 12 chr6 85649174 85650289 -96764953 + HERVH LTR ERV1 1876 2987 -4726 886 142 20 0 chr6 85650283 85650431 -96764811 + HERVH LTR ERV1 3140 3290 -4423 * 910 155 0 7 chr6 85650421 85650569 -96764673 + HERVH LTR ERV1 3492 3638 -4075 * 1179 152 0 1 chr6 85650559 85650920 -96764322 + HERVH LTR ERV1 4744 5149 -2564 * 1296 131 23 14 chr6 85650917 85651138 -96764104 + HERVH LTR ERV1 5597 5819 -1894 * 2510 71 50 13 chr6 85651136 85651514 -96763728 + HERVH LTR ERV1 7322 7713 0 741 63 0 0 chr6 85651514 85651609 -96763633 + LTR7 LTR ERV1 1 95 -355 351 250 35 9 chr6 85652111 85652227 -96763015 + (TA)n Simple_repeat Simple_repeat 2 120 0 25 0 0 0 chr6 85652857 85652882 -96762360 + AT_rich Low_complexity Low_complexity 1 25 0 219 340 66 0 chr6 85653380 85653486 -96761756 - L2 LINE L2 -254 3059 2947 2541 85 8 5 chr6 85653690 85654078 -96761164 - L1PA8A LINE L1 -27 6104 5742 385 278 0 0 chr6 85654222 85654311 -96760931 - MER46B DNA MER2_type 0 236 148 1867 138 20 52 chr6 85654311 85654660 -96760582 - THE1B LTR MaLR 0 364 27 1187 161 69 8 chr6 85654672 85654933 -96760309 - MER46B DNA MER2_type -84 152 1 24 53 0 0 chr6 85655462 85655500 -96759742 + AT_rich Low_complexity Low_complexity 1 38 0 625 223 55 10 chr6 85655727 85655929 -96759313 + L1MC/D LINE L1 5290 5500 -2308 1914 173 173 37 chr6 85655995 85656452 -96758790 - MLT2B1 LTR ERVL 0 520 2 489 66 0 121 chr6 85656532 85656571 -96758671 + MADE1 DNA Mariner 1 24 -56 2334 88 0 0 chr6 85656571 85656866 -96758376 - AluY SINE Alu -16 295 1 489 66 0 121 chr6 85656866 85656917 -96758325 + MADE1 DNA Mariner 24 80 0 263 302 0 79 chr6 85657030 85657156 -96758086 - L2 LINE L2 -46 3267 3152 505 222 26 74 chr6 85657182 85657371 -96757871 + HAL1 LINE L1 1890 2069 -438 696 231 286 22 chr6 85657465 85657734 -96757508 - MLT1G LTR MaLR -67 523 184 878 212 37 0 chr6 85657767 85657956 -96757286 + L1MC4 LINE L1 7426 7621 -421 230 158 0 0 chr6 85657957 85657995 -96757247 - MLT1B LTR MaLR -3 387 350 656 266 72 42 chr6 85657996 85658327 -96756915 + HAL1 LINE L1 2152 2492 -15 427 291 71 33 chr6 85658398 85658878 -96756364 - L1ME LINE L1 -441 5680 5175 184 306 28 0 chr6 85659054 85659126 -96756116 - L2 LINE L2 -569 2745 2672 1197 254 104 58 chr6 85659129 85659629 -96755613 + MLT1H1 LTR MaLR 20 542 -13 638 105 0 0 chr6 85660746 85660832 -96754410 - AluSg/x SINE Alu -20 290 205 1851 116 96 43 chr6 85661300 85661645 -96753597 - THE1B LTR MaLR -1 363 1 664 315 47 53 chr6 85662519 85662840 -96752402 + LTR16A LTR ERVL 19 337 -113 1723 102 4 16 chr6 85662903 85663147 -96752095 - AluSg/x SINE Alu 0 312 72 183 386 78 45 chr6 85663797 85664261 -96750981 - L2 LINE L2 -1647 1667 1189 292 320 10 10 chr6 85664653 85664750 -96750492 + MIR SINE MIR 166 262 0 377 333 56 51 chr6 85665544 85665760 -96749482 - L2 LINE L2 -1 3271 3055 2846 70 8 0 chr6 85665985 85666355 -96748887 - L1PA10 LINE L1 -4 6164 5792 27 0 0 0 chr6 85668548 85668575 -96746667 + AT_rich Low_complexity Low_complexity 1 27 0 181 388 75 27 chr6 85669500 85669688 -96745554 + L2 LINE L2 2583 2779 -535 3048 184 14 7 chr6 85670406 85670446 -96744796 - MLT2B3 LTR ERVL 0 554 516 345 82 0 0 chr6 85670446 85670495 -96744747 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 3048 184 14 7 chr6 85670495 85671004 -96744238 - MLT2B3 LTR ERVL -38 516 1 274 243 165 19 chr6 85672412 85672515 -96742727 + MIR SINE MIR 132 249 -13 233 355 9 28 chr6 85672769 85672876 -96742366 - L3 LINE CR1 -47 1530 1426 210 128 0 0 chr6 85675239 85675278 -96739964 + (TG)n Simple_repeat Simple_repeat 1 39 0 182 326 0 0 chr6 85675440 85675483 -96739759 - MIR SINE MIR -126 82 40 207 100 0 0 chr6 85676351 85676381 -96738861 + (CCA)n Simple_repeat Simple_repeat 3 32 0 205 321 0 37 chr6 85676966 85677047 -96738195 + L2 LINE L2 3234 3311 -2 1740 106 26 11 chr6 85677820 85678084 -96737158 + L1PA10 LINE L1 5901 6168 0 23 33 0 0 chr6 85679790 85679820 -96735422 + AT_rich Low_complexity Low_complexity 1 30 0 870 247 13 48 chr6 85680777 85681008 -96734234 + MER58A DNA MER1_type 1 223 -1 1586 102 0 0 chr6 85681064 85681279 -96733963 + AluSg/x SINE Alu 95 309 -1 2442 61 0 3 chr6 85681487 85681783 -96733459 + AluY SINE Alu 1 295 -16 1696 91 8 16 chr6 85681791 85682077 -96733165 + L1PA8 LINE L1 5909 6192 0 208 319 33 33 chr6 85684282 85684373 -96730869 - MIR SINE MIR -83 125 35 437 284 75 8 chr6 85685327 85685566 -96729676 - L1ME4a LINE L1 -192 5929 5675 438 116 61 0 chr6 85686765 85686912 -96728330 + (TA)n Simple_repeat Simple_repeat 2 157 0 254 73 24 0 chr6 85687234 85687275 -96727967 + (CA)n Simple_repeat Simple_repeat 1 42 0 242 296 49 63 chr6 85688791 85688933 -96726309 + LTR33 LTR ERVL 44 183 -338 260 186 216 72 chr6 85689423 85689590 -96725652 - LTR16A1 LTR ERVL -12 445 211 1020 288 115 14 chr6 85690026 85690815 -96724427 - L1ME4a LINE L1 -1310 4836 3968 1566 163 98 7 chr6 85690833 85691110 -96724132 + AluJb SINE Alu 1 302 -10 5704 128 35 36 chr6 85691220 85692584 -96722658 - L1PA13 LINE L1 -2 6161 4815 1883 234 59 20 chr6 85692575 85693435 -96721807 - L1PA12 LINE L1 -6297 1284 341 * 379 77 26 104 chr6 85693450 85693544 -96721698 - AluS SINE Alu -238 65 1 2157 95 0 0 chr6 85693551 85693870 -96721372 - AluSx SINE Alu 0 319 1 510 203 57 16 chr6 85697846 85697969 -96717273 + MIR SINE MIR 70 197 -65 413 330 123 46 chr6 85697876 85698728 -96716514 + L2 LINE L2 2379 3294 -19 * 434 49 16 0 chr6 85699129 85699190 -96716052 + (CA)n Simple_repeat Simple_repeat 2 63 0 22 56 0 0 chr6 85700527 85700563 -96714679 + AT_rich Low_complexity Low_complexity 1 36 0 2488 49 0 10 chr6 85700712 85701017 -96714225 + AluY SINE Alu 4 305 -6 187 234 21 21 chr6 85701165 85701212 -96714030 - MER5A DNA MER1_type -137 52 6 252 242 42 63 chr6 85702207 85702302 -96712940 - MLT1L LTR MaLR -333 282 190 267 366 49 0 chr6 85702346 85702510 -96712732 + L2 LINE L2 2872 3043 -229 216 307 118 8 chr6 85703390 85703517 -96711725 - MIR SINE MIR -2 260 120 2870 119 56 26 chr6 85704211 85704663 -96710579 - Tigger3b DNA MER2_type -1797 1232 762 2667 33 3 0 chr6 85704663 85704969 -96710273 + AluY SINE Alu 1 307 -4 2870 119 56 26 chr6 85704969 85705018 -96710224 - Tigger3b DNA MER2_type -2267 762 716 5489 76 4 1 chr6 85705023 85705756 -96709486 - L1PA7 LINE L1 -8 6146 5412 6615 97 25 0 chr6 85705756 85706704 -96708538 - L1PA7 LINE L1 -3871 2275 1304 465 143 0 0 chr6 85706713 85706790 -96708452 - L1P LINE L1 -2128 4018 3942 5394 160 4 35 chr6 85706792 85707904 -96707338 - L1PA7 LINE L1 -4846 1300 11 15535 94 15 11 chr6 85707912 85710243 -96704999 - L1P LINE L1 -726 5743 3403 * 26026 45 2 0 chr6 85710242 85716381 -96698861 + L1PA4 LINE L1 1 6155 0 12731 136 24 22 chr6 85716379 85719763 -96695479 - L1P3 LINE L1 -3043 3418 6 * 3614 129 39 63 chr6 85719783 85720529 -96694713 - Tigger3b DNA MER2_type -503 728 1 403 267 30 0 chr6 85720761 85720926 -96694316 + L1ME LINE L1 5648 5817 -304 2427 49 23 7 chr6 85721032 85721338 -96693904 + AluY SINE Alu 1 311 0 28 0 0 0 chr6 85721435 85721463 -96693779 + AT_rich Low_complexity Low_complexity 1 28 0 278 361 42 8 chr6 85722573 85722692 -96692550 - L3 LINE CR1 -21 1556 1434 352 294 42 0 chr6 85722911 85723030 -96692212 + LTR16A LTR ERVL 325 448 -2 263 312 24 24 chr6 85723065 85723190 -96692052 - L3 LINE CR1 -200 1377 1253 252 320 96 8 chr6 85724198 85724323 -96690919 + MIR SINE MIR 71 206 -56 238 344 23 16 chr6 85724376 85724504 -96690738 + MIR SINE MIR 97 225 -37 202 211 0 0 chr6 85724535 85724573 -96690669 + MIR SINE MIR 218 255 -7 22 0 0 0 chr6 85724830 85724852 -96690390 + AT_rich Low_complexity Low_complexity 1 22 0 272 271 40 62 chr6 85726177 85726354 -96688888 + L2 LINE L2 3137 3309 -4 1984 126 7 7 chr6 85726575 85726869 -96688373 + AluSx SINE Alu 1 294 -18 460 275 11 22 chr6 85726912 85727094 -96688148 + L1M4 LINE L1 4094 4273 -1873 392 214 24 0 chr6 85727094 85727178 -96688064 + MLT1F1 LTR MaLR 1 86 -481 295 300 11 0 chr6 85727207 85727297 -96687945 - MIR SINE MIR -18 244 154 600 40 0 0 chr6 85727715 85727790 -96687452 + (CA)n Simple_repeat Simple_repeat 2 76 0 298 263 45 45 chr6 85727801 85727957 -96687285 + HAL1 LINE L1 1197 1352 -1155 885 201 43 37 chr6 85728027 85728351 -96686891 + L1MCa LINE L1 2152 2477 -3949 727 241 156 3 chr6 85728378 85728693 -96686549 + L1MCa LINE L1 2484 2846 -3580 286 229 84 0 chr6 85728701 85728784 -96686458 + L1MC3 LINE L1 6180 6269 -1516 1616 226 21 0 chr6 85728790 85729179 -96686063 + L1MC3 LINE L1 6365 6761 -1024 * 4453 45 0 35 chr6 85729177 85729780 -96685462 - L1PA5 LINE L1 -31 6123 5542 3561 172 55 65 chr6 85729761 85730807 -96684435 + L1MC3 LINE L1 6138 6342 -2 * 392 320 27 60 chr6 85730842 85731211 -96684031 + HAL1 LINE L1 1405 1761 -746 21 82 0 0 chr6 85732038 85732087 -96683155 + AT_rich Low_complexity Low_complexity 1 49 0 277 240 16 8 chr6 85732547 85732668 -96682574 + (TTATA)n Simple_repeat Simple_repeat 2 123 0 31 0 0 0 chr6 85732722 85732753 -96682489 + AT_rich Low_complexity Low_complexity 1 31 0 271 261 45 23 chr6 85733251 85733339 -96681903 - MIR3 SINE MIR -3 205 116 2058 155 0 0 chr6 85735367 85735664 -96679578 + AluSx SINE Alu 1 297 -15 1624 172 15 30 chr6 85736888 85737220 -96678022 - L1PB4 LINE L1 -5 6151 5825 1904 121 60 24 chr6 85737275 85737606 -96677636 - MER61A LTR ERV1 0 343 1 11977 92 37 21 chr6 85737606 85739466 -96675776 - MER61A-int LTR ERV1 0 5217 3329 35213 88 8 15 chr6 85739476 85742369 -96672873 + L1PA6 LINE L1 11 2922 -3232 2161 96 41 0 chr6 85742369 85742661 -96672581 + AluY SINE Alu 1 304 -7 35213 88 8 15 chr6 85742661 85745955 -96669287 + L1PA6 LINE L1 2922 6153 -1 2437 121 19 0 chr6 85745960 85746339 -96668903 - MER61A-int LTR ERV1 -1873 3344 2959 1792 143 61 18 chr6 85746371 85746700 -96668542 - MER61A LTR ERV1 0 343 1 2779 165 31 2 chr6 85746732 85747218 -96668024 + MER41E LTR ERV1 1 500 -12 21 71 0 0 chr6 85748013 85748055 -96667187 + AT_rich Low_complexity Low_complexity 1 42 0 436 149 0 0 chr6 85749201 85749275 -96665967 - Alu SINE Alu -2 308 235 526 309 138 0 chr6 85749281 85749491 -96665751 + MIR SINE MIR 18 256 -6 276 374 28 28 chr6 85749623 85749837 -96665405 - MIR SINE MIR 0 262 49 228 351 54 0 chr6 85750559 85750633 -96664609 + L2 LINE L2 3121 3198 -74 341 271 47 39 chr6 85750643 85750772 -96664470 - L2 LINE L2 -5 3267 3138 891 320 72 25 chr6 85750811 85751258 -96663984 + L2 LINE L2 2786 3248 -65 193 346 57 6 chr6 85751292 85751451 -96663791 - L2 LINE L2 -1492 1822 1656 796 295 82 48 chr6 85751480 85751893 -96663349 - L2 LINE L2 -526 2788 2362 207 246 49 0 chr6 85751893 85751954 -96663288 - L2 LINE L2 -2611 703 640 1540 206 20 20 chr6 85752834 85753184 -96662058 + MLT1A1 LTR MaLR 5 354 -11 491 324 66 73 chr6 85753221 85753660 -96661582 + L2 LINE L2 2836 3271 -1 25 0 0 0 chr6 85754492 85754517 -96660725 + AT_rich Low_complexity Low_complexity 1 25 0 270 0 0 0 chr6 85754733 85754763 -96660479 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 274 296 118 30 chr6 85754840 85755009 -96660233 - MIR SINE MIR -56 206 23 318 314 132 34 chr6 85756082 85756286 -96658956 + MIR SINE MIR 21 244 -18 21 36 0 0 chr6 85756995 85757023 -96658219 + AT_rich Low_complexity Low_complexity 1 28 0 39535 58 4 5 chr6 85757812 85763966 -96651276 + L1PA4 LINE L1 7 6150 -5 22 0 0 0 chr6 85764878 85764900 -96650342 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr6 85765265 85765308 -96649934 + AT_rich Low_complexity Low_complexity 1 43 0 340 269 35 14 chr6 85765846 85765987 -96649255 - HAL1b LINE L1 -889 459 316 232 185 19 0 chr6 85767580 85767634 -96647608 + (TCTG)n Simple_repeat Simple_repeat 1 55 0 194 327 19 75 chr6 85768072 85768231 -96647011 + MIR SINE MIR 17 166 -96 325 294 84 7 chr6 85768854 85768997 -96646245 + MIR SINE MIR 75 228 -34 183 80 0 0 chr6 85769021 85769046 -96646196 + (TTA)n Simple_repeat Simple_repeat 3 27 0 313 213 57 133 chr6 85769362 85769521 -96645721 - MER112 DNA MER1_type 0 260 119 2515 70 0 0 chr6 85769521 85769819 -96645423 + AluY SINE Alu 2 299 -12 313 213 57 133 chr6 85769819 85769870 -96645372 - MER112 DNA MER1_type -141 119 66 1489 138 36 12 chr6 85770921 85771168 -96644074 + AluJb SINE Alu 40 292 -20 715 288 139 4 chr6 85772075 85772356 -96642886 + L1MCc LINE L1 919 1237 -5186 2076 171 0 22 chr6 85772426 85772788 -96642454 - MLT1A1 LTR MaLR -2 363 10 411 289 141 6 chr6 85773224 85773380 -96641862 + MER45A DNA AcHobo 1 177 -1 503 149 0 0 chr6 85773808 85773882 -96641360 + MLT1A1 LTR MaLR 122 195 -170 241 338 146 4 chr6 85773891 85774172 -96641070 - L2 LINE L2 -1264 2050 1730 1560 125 0 0 chr6 85775526 85775742 -96639500 + AluSg/x SINE Alu 76 291 -21 249 263 40 13 chr6 85775794 85775870 -96639372 - MIR SINE MIR -131 131 54 302 274 24 0 chr6 85775891 85775975 -96639267 - MIR SINE MIR -118 144 59 2209 108 0 7 chr6 85776669 85776974 -96638268 + AluSg SINE Alu 1 303 -7 245 61 45 61 chr6 85777483 85777549 -96637693 + T-rich Low_complexity Low_complexity 3 67 0 432 0 0 0 chr6 85778339 85778387 -96636855 + (TA)n Simple_repeat Simple_repeat 2 49 0 1570 198 19 25 chr6 85779176 85779490 -96635752 + AluJo SINE Alu 1 312 0 1812 200 16 97 chr6 85779618 85780184 -96635058 + MLT2B1 LTR ERVL 1 520 0 186 295 57 76 chr6 85780218 85780323 -96634919 - L3 LINE CR1 -136 1441 1339 1573 164 23 0 chr6 85780447 85780709 -96634533 + AluJb SINE Alu 29 296 -16 234 292 38 57 chr6 85781181 85781210 -96634032 + L1M4 LINE L1 4964 4992 -1154 2005 107 3 67 chr6 85781210 85781537 -96633705 + AluSg1 SINE Alu 1 306 -3 234 292 38 57 chr6 85781537 85781716 -96633526 + L1M4 LINE L1 4992 5168 -978 198 0 0 0 chr6 85781740 85781762 -96633480 + (A)n Simple_repeat Simple_repeat 1 22 0 837 204 164 8 chr6 85781936 85782303 -96632939 - MER69 DNA AcHobo 0 2526 2103 1327 299 18 5 chr6 85782355 85782746 -96632496 - MER69 DNA AcHobo -2130 396 1 584 173 130 6 chr6 85783074 85783240 -96632002 - MIR SINE MIR -48 214 21 1971 123 45 60 chr6 85783311 85783692 -96631550 + THE1C LTR MaLR 1 375 0 2027 113 178 117 chr6 85783694 85784216 -96631026 + THE1C-int LTR MaLR 3 556 -1095 5019 116 4 6 chr6 85784235 85784944 -96630298 + THE1C-int LTR MaLR 873 1580 0 769 64 0 0 chr6 85784944 85785038 -96630204 + THE1C LTR MaLR 1 94 -281 2186 114 74 8 chr6 85785038 85785390 -96629852 + THE1C LTR MaLR 1 375 0 2323 181 11 13 chr6 85785395 85785853 -96629389 - MER65C LTR ERV1 -4 457 1 405 333 30 12 chr6 85787334 85787499 -96627743 - LTR16B LTR ERVL -196 268 101 187 272 58 87 chr6 85787878 85787981 -96627261 + MER5B DNA MER1_type 9 108 -70 246 290 30 20 chr6 85788006 85788106 -96627136 - MARNA DNA Mariner -361 225 125 887 186 98 86 chr6 85788887 85789327 -96625915 - LTR56 LTR ERV1 0 445 1 505 265 29 28 chr6 85789418 85789539 -96625703 + MIR SINE MIR 18 141 -121 243 0 0 0 chr6 85789539 85789566 -96625676 + (TG)n Simple_repeat Simple_repeat 2 28 0 505 265 29 28 chr6 85789566 85789625 -96625617 + MIR SINE MIR 141 198 -64 2006 261 101 27 chr6 85790372 85791220 -96624022 - L1ME3A LINE L1 -10 6160 5254 1957 185 16 18 chr6 85791236 85791619 -96623623 + MLT1B LTR MaLR 1 382 -8 249 33 0 0 chr6 85791672 85791702 -96623540 + (TC)n Simple_repeat Simple_repeat 2 31 0 2241 281 71 51 chr6 85791702 85792484 -96622758 - L1ME3A LINE L1 -960 5186 4421 2424 65 0 0 chr6 85792484 85792776 -96622466 + AluY SINE Alu 1 292 -19 2241 281 71 51 chr6 85792776 85793776 -96621466 - L1ME3A LINE L1 -1725 4421 3368 1363 169 36 12 chr6 85793775 85794023 -96621219 + L1PA13 LINE L1 1 254 -7327 * 13540 201 31 10 chr6 85794024 85795328 -96619914 + L1PA13 LINE L1 3797 5073 -2528 351 0 0 0 chr6 85795328 85795367 -96619875 + (CA)n Simple_repeat Simple_repeat 2 40 0 13540 201 31 10 chr6 85795367 85797802 -96617440 + L1PA13 LINE L1 5073 7587 -14 4606 162 61 50 chr6 85797839 85799816 -96615426 - L1MA4A LINE L1 0 7005 5019 5884 145 3 3 chr6 85799816 85800718 -96614524 + L1PA12 LINE L1 1441 2342 -5242 4373 106 1 1 chr6 85800710 85801370 -96613872 + L1PA12 LINE L1 2616 3275 -4309 * 16716 59 6 1 chr6 85801370 85804311 -96610931 - L1PA4 LINE L1 0 6155 3203 9126 50 2 2 chr6 85804300 85806225 -96609017 + L1PA5 LINE L1 4230 6149 -5 * 315 221 16 90 chr6 85806257 85806379 -96608863 + MER66B LTR ERV1 220 332 -154 882 166 17 6 chr6 85806417 85806598 -96608644 - L1MA4A LINE L1 -1812 5036 4854 8288 214 29 7 chr6 85806607 85809250 -96605992 - L1MA4A LINE L1 -3077 3771 1070 3196 185 64 2 chr6 85809372 85809982 -96605260 + L1MB1 LINE L1 5489 6136 -53 2885 215 43 9 chr6 85810003 85810695 -96604547 + L1MB7 LINE L1 5450 6165 -19 277 163 23 0 chr6 85810821 85810864 -96604378 + Tigger5 DNA MER2_type 2278 2321 -2 362 289 50 0 chr6 85810896 85811076 -96604166 - L1MEc LINE L1 -3323 3059 2871 731 266 102 19 chr6 85811165 85811716 -96603526 - L1MEc LINE L1 -3622 2760 2202 2540 107 3 3 chr6 85811790 85812145 -96603097 + THE1A LTR MaLR 1 355 0 442 310 71 24 chr6 85812188 85812598 -96602644 - L1MEc LINE L1 -4900 1484 1056 342 67 0 0 chr6 85812746 85812791 -96602451 + (TG)n Simple_repeat Simple_repeat 1 45 0 934 248 10 10 chr6 85813419 85813621 -96601621 + MLT1A2 LTR MaLR 173 374 0 753 269 123 37 chr6 85813691 85814253 -96600989 - L1ME4a LINE L1 -11 6110 5501 824 197 0 0 chr6 85814277 85814409 -96600833 + FLAM_C SINE Alu 1 132 -11 23 33 0 0 chr6 85814584 85814614 -96600628 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 85815591 85815619 -96599623 + AT_rich Low_complexity Low_complexity 1 28 0 630 263 127 10 chr6 85815647 85815852 -96599390 + MIR SINE MIR 34 262 0 16107 166 48 9 chr6 85816146 85819038 -96596204 + L1MA2 LINE L1 22 3042 -4523 1636 182 21 40 chr6 85819038 85819417 -96595825 + THE1C LTR MaLR 4 375 0 16107 166 48 9 chr6 85819417 85819618 -96595624 + L1MA2 LINE L1 3042 3234 -4331 9837 172 19 27 chr6 85819630 85821654 -96593588 + L1P LINE L1 11 2019 -4127 6861 55 9 1 chr6 85821653 85827647 -96587595 + L1PA4 LINE L1 22 6149 -6 * 705 131 0 0 chr6 85827647 85827746 -96587496 - AluSq/x SINE Alu -181 131 33 9421 183 28 33 chr6 85827746 85830062 -96585180 + L1MA2 LINE L1 4069 6371 -1194 2006 156 135 5 chr6 85830072 85830451 -96584791 + MSTA LTR MaLR 1 428 0 8682 165 38 2 chr6 85830451 85832040 -96583202 + MSTA-int LTR MaLR 1 1645 -6 2111 132 132 5 chr6 85832045 85832425 -96582817 + MSTA LTR MaLR 1 428 0 5747 122 14 14 chr6 85832429 85833338 -96581904 + L1MA2 LINE L1 6381 7462 -261 1829 147 50 59 chr6 85833338 85833678 -96581564 + MER1B DNA MER1_type 1 337 0 5747 122 14 14 chr6 85833678 85833941 -96581301 + L1MA2 LINE L1 7462 7723 0 22 35 0 0 chr6 85834281 85834310 -96580932 + AT_rich Low_complexity Low_complexity 1 29 0 2277 99 0 0 chr6 85834427 85834720 -96580522 + AluY SINE Alu 1 293 -18 2054 141 3 0 chr6 85834737 85835027 -96580215 + AluSx SINE Alu 1 291 -21 1339 202 70 10 chr6 85835924 85836154 -96579088 + L1ME1 LINE L1 2515 2779 -3367 2355 80 3 17 chr6 85836154 85836455 -96578787 + AluSx SINE Alu 1 297 -15 1339 202 70 10 chr6 85836455 85836611 -96578631 + L1ME1 LINE L1 2779 2924 -3222 795 227 69 52 chr6 85836616 85837598 -96577644 + L1ME1 LINE L1 3561 4675 -1471 1024 257 63 13 chr6 85837613 85837994 -96577248 + L1ME1 LINE L1 5700 6099 -67 1017 151 6 6 chr6 85838001 85838167 -96577075 + AluJb SINE Alu 132 297 -15 1406 170 73 27 chr6 85838310 85838569 -96576673 + AluJo SINE Alu 1 271 -41 1679 243 104 36 chr6 85838697 85839474 -96575768 + L1M4 LINE L1 4451 5280 -866 722 308 115 0 chr6 85839474 85839521 -96575721 - MLT2F LTR ERVL 0 663 623 543 90 0 0 chr6 85839521 85839599 -96575643 + (TA)n Simple_repeat Simple_repeat 2 79 0 722 308 115 0 chr6 85839599 85839811 -96575431 - MLT2F LTR ERVL -40 623 374 2057 180 35 29 chr6 85839839 85840295 -96574947 - MLT1C LTR MaLR 0 467 9 682 302 81 19 chr6 85840303 85840611 -96574631 - MLT2F LTR ERVL -336 327 1 450 258 12 24 chr6 85840611 85840778 -96574464 + L1M4 LINE L1 5285 5449 -725 4801 157 44 1 chr6 85841650 85842726 -96572516 + L1PA16 LINE L1 5050 6162 -4 1741 133 86 44 chr6 85842884 85843244 -96571998 + THE1C LTR MaLR 1 375 0 699 188 15 0 chr6 85843394 85843527 -96571715 - MER20 DNA MER1_type 0 219 85 1636 188 28 3 chr6 85843863 85844150 -96571092 + AluJo SINE Alu 1 294 -18 2222 133 7 0 chr6 85844352 85844660 -96570582 - AluSq SINE Alu -3 310 1 1069 161 83 9 chr6 85844951 85845168 -96570074 + MER46A DNA MER2_type 4 236 0 1387 256 16 76 chr6 85845280 85845765 -96569477 - LTR16C LTR ERVL 0 491 36 248 219 229 62 chr6 85845857 85845953 -96569289 + MIR SINE MIR 12 123 -139 617 188 23 8 chr6 85845956 85846084 -96569158 - MLT1A1 LTR MaLR -235 130 1 1873 214 34 38 chr6 85846550 85847051 -96568191 + MLT1D LTR MaLR 7 505 0 811 163 0 0 chr6 85847339 85847468 -96567774 + AluJo SINE Alu 2 130 -172 6794 177 20 14 chr6 85847477 85849589 -96565653 + L1PA13 LINE L1 4041 6159 -4 763 230 59 0 chr6 85849590 85849742 -96565500 + AluJo SINE Alu 133 293 -19 2309 110 0 7 chr6 85849802 85850112 -96565130 - AluSx SINE Alu -3 309 2 268 242 76 15 chr6 85850573 85850639 -96564603 + MER91C DNA MER1_type 40 109 -31 1547 139 14 11 chr6 85850910 85851191 -96564051 - L1P4 LINE L1 -440 5721 5440 1772 160 0 23 chr6 85851306 85851613 -96563629 + MER1B DNA MER1_type 32 331 -8 11969 196 13 4 chr6 85851613 85854194 -96561048 - L1P4 LINE L1 -942 5204 2601 7105 26 1 0 chr6 85854193 85855429 -96559813 + L1PA3 LINE L1 4891 6128 -27 * 10438 104 8 11 chr6 85855918 85857516 -96557726 + L1P LINE L1 11 1603 -4543 1867 59 0 0 chr6 85857524 85857761 -96557481 + L1PA5 LINE L1 5913 6149 -5 540 259 14 0 chr6 85857843 85857982 -96557260 + L1M4 LINE L1 4862 5002 -1144 771 213 12 29 chr6 85858505 85858585 -96556657 + L1M4 LINE L1 5022 5102 -1044 1318 140 21 21 chr6 85858585 85858820 -96556422 - MER46A DNA MER2_type -1 235 1 771 213 12 29 chr6 85858820 85858983 -96556259 + L1M4 LINE L1 5102 5261 -885 * 3260 196 55 6 chr6 85858982 85859880 -96555362 + L1MD3 LINE L1 5183 5403 -743 2786 256 95 66 chr6 85859992 85860583 -96554659 - L1MEc LINE L1 -3873 2523 1951 2180 97 14 3 chr6 85860583 85860871 -96554371 - AluSx SINE Alu -21 291 1 2786 256 95 66 chr6 85860871 85861926 -96553316 - L1MEc LINE L1 -4445 1951 828 670 322 155 35 chr6 85861926 85862506 -96552736 + L3 LINE CR1 766 1415 -162 21 71 0 0 chr6 85862523 85862565 -96552677 + AT_rich Low_complexity Low_complexity 1 42 0 2291 94 0 3 chr6 85862733 85863032 -96552210 + AluSq SINE Alu 1 298 -15 1116 246 114 58 chr6 85863189 85864067 -96551175 - HAL1 LINE L1 -341 2166 1240 6794 57 16 5 chr6 85864068 85865237 -96550005 - L1PA7 LINE L1 0 6154 4976 1891 170 6 3 chr6 85865349 85865660 -96549582 - AluJb SINE Alu 0 312 1 1076 155 64 11 chr6 85865688 85865875 -96549367 + AluSq SINE Alu 1 197 -116 743 219 6 24 chr6 85866162 85866331 -96548911 - MER45 DNA AcHobo 0 1581 1416 1833 160 8 34 chr6 85866358 85866715 -96548527 - L1PB4 LINE L1 0 6156 5809 3554 196 73 0 chr6 85866720 85867458 -96547784 - MER45B DNA AcHobo -248 792 1 547 355 41 5 chr6 85867517 85867737 -96547505 - MIR SINE MIR -7 255 28 302 390 44 0 chr6 85867911 85868047 -96547195 + HAL1 LINE L1 3 144 -2363 943 290 126 31 chr6 85868408 85869255 -96545987 + HAL1 LINE L1 993 1920 -587 812 303 22 49 chr6 85869455 85869904 -96545338 - LTR16B LTR ERVL 0 464 28 21 0 0 0 chr6 85870075 85870096 -96545146 + AT_rich Low_complexity Low_complexity 1 21 0 434 284 82 29 chr6 85871291 85871499 -96543743 - MLT1J LTR MaLR -256 255 37 21 57 0 0 chr6 85872683 85872718 -96542524 + AT_rich Low_complexity Low_complexity 1 35 0 327 231 11 11 chr6 85874054 85874145 -96541097 - MIR SINE MIR 0 262 172 7465 186 135 54 chr6 85874806 85877102 -96538140 + L1PBa LINE L1 6 2487 -4376 2122 222 2 2 chr6 85877099 85877590 -96537652 + L1M4 LINE L1 2552 3042 -3104 * 25052 53 39 3 chr6 85877591 85881002 -96534240 + L1P LINE L1 2 3536 -2610 247 133 0 0 chr6 85880999 85881044 -96534198 + L1M4 LINE L1 4324 4368 -1778 * 3343 80 0 4 chr6 85881068 85881520 -96533722 - L1PA8 LINE L1 -10 6162 5713 198 143 0 0 chr6 85882374 85882409 -96532833 + (TA)n Simple_repeat Simple_repeat 1 35 0 2382 99 0 16 chr6 85882421 85882734 -96532508 + AluSc SINE Alu 1 308 -1 947 178 0 13 chr6 85882887 85883044 -96532198 - AluSx SINE Alu -8 302 148 1923 94 5 174 chr6 85883047 85883461 -96531781 + LTR14B LTR ERVK 1 608 0 21177 64 9 8 chr6 85883461 85886326 -96528916 + HERVK14 LTR ERVK 1 2868 -3077 3134 79 33 12 chr6 85886311 85887059 -96528183 + HERVK14 LTR ERVK 4930 5763 -182 * 325 158 0 18 chr6 85887060 85887117 -96528125 + MER41C LTR ERV1 6 61 -493 682 14 50 191 chr6 85887117 85887258 -96527984 + HERVK14 LTR ERVK 5822 5942 -3 1994 82 7 176 chr6 85887263 85887677 -96527565 + LTR14B LTR ERVK 1 608 0 892 99 66 59 chr6 85887679 85887717 -96527525 - AluSx SINE Alu -159 153 117 8325 55 1 0 chr6 85887717 85888682 -96526560 + LTR5 LTR ERVK 1 966 -3 892 99 66 59 chr6 85888682 85888795 -96526447 - AluSx SINE Alu -195 117 1 887 162 20 46 chr6 85888795 85888992 -96526250 - L1MC1 LINE L1 -8 6325 6134 209 308 51 0 chr6 85890583 85890661 -96524581 + MIR SINE MIR 68 149 -113 655 211 105 24 chr6 85890670 85890879 -96524363 + MLT1J2 LTR MaLR 2 227 -223 363 159 14 0 chr6 85890987 85891056 -96524186 + MLT1J2 LTR MaLR 381 450 0 198 299 149 0 chr6 85891056 85891143 -96524099 + MIR SINE MIR 162 261 -1 1055 164 81 47 chr6 85891480 85891591 -96523651 - MER33 DNA MER1_type -2261 324 218 553 64 0 0 chr6 85891591 85891669 -96523573 - L1PA3 LINE L1 -3 6152 6075 1055 164 81 47 chr6 85891669 85891877 -96523365 - MER33 DNA MER1_type -2367 218 1 26 0 0 0 chr6 85892378 85892404 -96522838 + AT_rich Low_complexity Low_complexity 1 26 0 2007 182 18 5 chr6 85892761 85893201 -96522041 + L1P LINE L1 4956 5401 -745 1664 78 5 14 chr6 85893205 85893422 -96521820 + AluSc SINE Alu 75 289 -20 792 303 77 3 chr6 85894399 85894709 -96520533 + MLT1I LTR MaLR 57 389 -20 319 327 10 0 chr6 85895014 85895118 -96520124 - MIR SINE MIR 0 262 158 401 309 12 43 chr6 85895367 85895529 -96519713 - MIR SINE MIR -92 170 14 799 223 30 6 chr6 85896803 85896969 -96518273 - MER5A DNA MER1_type -1 188 19 551 292 183 9 chr6 85897443 85897662 -96517580 - MIR SINE MIR -2 260 4 200 191 95 0 chr6 85898722 85898764 -96516478 - L2 LINE L2 -1 3312 3267 471 314 121 14 chr6 85899008 85899231 -96516011 - MIR SINE MIR -11 251 5 269 231 29 19 chr6 85899331 85899435 -96515807 + (TAA)n Simple_repeat Simple_repeat 3 107 0 1584 138 0 18 chr6 85899572 85899848 -96515394 - L1MC/D LINE L1 -740 5604 5334 2791 7 0 0 chr6 85899972 85900274 -96514968 + AluY SINE Alu 1 302 -9 2216 122 0 0 chr6 85900332 85900626 -96514616 + AluSg SINE Alu 1 294 -16 207 265 70 56 chr6 85900824 85900943 -96514299 + MIR SINE MIR 32 148 -63 269 313 113 15 chr6 85902371 85902566 -96512676 + L2 LINE L2 1892 2105 -1209 508 347 45 28 chr6 85902759 85903183 -96512059 + ERVL LTR ERVL 3414 3844 -1920 1081 204 137 32 chr6 85904099 85904442 -96510800 + MLT1B LTR MaLR 12 390 0 2366 58 3 3 chr6 85904813 85905107 -96510135 + AluY SINE Alu 1 294 -17 221 89 36 36 chr6 85905107 85905163 -96510079 + (TA)n Simple_repeat Simple_repeat 1 56 0 237 92 77 0 chr6 85906084 85906149 -96509093 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 214 294 44 0 chr6 85906166 85906234 -96509008 - MIR SINE MIR -108 154 84 203 224 52 0 chr6 85907777 85907835 -96507407 - MIR SINE MIR -71 191 131 271 341 78 16 chr6 85907936 85908065 -96507177 - MIR3 SINE MIR -14 194 58 1975 128 14 0 chr6 85908391 85908672 -96506570 + AluSx SINE Alu 1 285 -27 2385 103 0 0 chr6 85908980 85909291 -96505951 + AluSq SINE Alu 1 311 -2 2435 188 33 30 chr6 85909430 85910067 -96505175 + L1MC3 LINE L1 6329 6967 -818 286 146 0 0 chr6 85910074 85910122 -96505120 + MLT1F1 LTR MaLR 78 125 -442 2605 180 53 9 chr6 85910122 85910689 -96504553 + L1MD3 LINE L1 7404 7995 0 1530 208 11 25 chr6 85910695 85910979 -96504263 + AluJo SINE Alu 1 280 -32 1131 156 38 14 chr6 85911423 85911634 -96503608 + Tigger7 DNA MER2_type 48 263 -2224 539 202 20 0 chr6 85911636 85911735 -96503507 + Tigger7 DNA MER2_type 2387 2487 0 242 161 32 32 chr6 85911764 85911826 -96503416 + L1ME4a LINE L1 6054 6115 -6 439 286 101 6 chr6 85912289 85912457 -96502785 - MIR SINE MIR -7 255 72 29 47 0 0 chr6 85912463 85912506 -96502736 + AT_rich Low_complexity Low_complexity 1 43 0 4598 161 20 18 chr6 85914888 85915104 -96500138 + L1MA10 LINE L1 5277 5491 -843 2216 92 0 7 chr6 85915104 85915387 -96499855 + AluSg SINE Alu 1 281 -29 183 42 0 0 chr6 85915396 85915420 -96499822 + (CAA)n Simple_repeat Simple_repeat 3 26 0 4598 161 20 18 chr6 85915420 85916122 -96499120 + L1MA10 LINE L1 5498 6207 -127 306 0 0 0 chr6 85916962 85916996 -96498246 + (TA)n Simple_repeat Simple_repeat 2 35 0 1418 242 65 29 chr6 85917417 85917863 -96497379 - LTR40c LTR ERVL 0 465 4 1192 139 0 0 chr6 85918127 85918293 -96496949 - AluSg/x SINE Alu -10 302 137 1166 135 108 14 chr6 85918325 85918613 -96496629 - MER3 DNA MER1_type 0 2548 2234 613 173 0 0 chr6 85918616 85918726 -96496516 - MER3 DNA MER1_type -47 162 53 408 222 34 51 chr6 85919099 85919216 -96496026 + L2 LINE L2 3188 3302 -11 408 311 60 22 chr6 85919221 85919404 -96495838 + MIR SINE MIR 72 261 -1 1423 183 41 8 chr6 85920715 85920983 -96494259 - AluJo SINE Alu -35 277 1 1959 136 4 0 chr6 85921041 85921320 -96493922 + AluSx SINE Alu 1 280 -32 486 0 0 0 chr6 85921320 85921374 -96493868 + (CATA)n Simple_repeat Simple_repeat 3 56 0 2013 136 7 26 chr6 85921752 85922054 -96493188 + AluSx SINE Alu 1 296 -16 211 283 22 0 chr6 85922484 85922530 -96492712 + L2 LINE L2 3141 3187 -85 189 298 32 96 chr6 85922698 85922792 -96492450 - L3 LINE CR1 -1399 178 91 2284 87 0 7 chr6 85924248 85924537 -96490705 - AluSc SINE Alu -22 287 1 2303 107 0 0 chr6 85926345 85926654 -96488588 - AluSg SINE Alu -1 309 1 313 21 21 21 chr6 85926655 85926702 -96488540 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2124 106 3 7 chr6 85926702 85926986 -96488256 - AluSg SINE Alu -27 283 1 1718 167 35 0 chr6 85926990 85927277 -96487965 - AluJo SINE Alu -15 297 1 312 276 38 48 chr6 85927517 85927622 -96487620 - L3 LINE CR1 -13 1564 1461 459 191 12 0 chr6 85927767 85927851 -96487391 + Tigger5 DNA MER2_type 1 85 -2238 332 243 0 0 chr6 85927849 85927923 -96487319 - Tigger5 DNA MER2_type -8 2315 2242 * 345 241 0 13 chr6 85927913 85927992 -96487250 + Tigger5 DNA MER2_type 2242 2319 -4 484 215 51 25 chr6 85928320 85928478 -96486764 + L1MC5 LINE L1 7483 7644 -317 231 294 118 7 chr6 85930341 85930477 -96484765 - MIR SINE MIR -8 254 104 252 301 36 12 chr6 85930513 85930596 -96484646 + L2 LINE L2 3171 3255 -17 4748 249 31 26 chr6 85931187 85932813 -96482429 - L1P3 LINE L1 -3537 3260 1629 26 0 0 27 chr6 85932813 85932826 -96482416 + AT_rich Low_complexity Low_complexity 1 13 -23 5629 96 38 0 chr6 85932826 85933863 -96481379 - L1PA7 LINE L1 -1 6153 5097 26 0 0 27 chr6 85933863 85933886 -96481356 + AT_rich Low_complexity Low_complexity 13 36 0 3894 49 0 2 chr6 85933886 85934358 -96480884 - L1PA5 LINE L1 -8 6146 5676 27974 112 11 77 chr6 85934360 85939804 -96475438 - L1PA7 LINE L1 -1052 5094 12 7374 207 63 18 chr6 85939807 85940574 -96474668 - L1P3 LINE L1 -5156 1631 900 252 0 0 0 chr6 85940574 85940602 -96474640 + (CA)n Simple_repeat Simple_repeat 1 28 0 7374 207 63 18 chr6 85940602 85941395 -96473847 - L1P3 LINE L1 -5887 900 1 268 304 20 10 chr6 85941549 85941651 -96473591 - L1MC/D LINE L1 -2270 5538 5436 664 196 10 72 chr6 85942007 85942201 -96473041 - LTR41 LTR ERVL -591 182 1 552 255 76 127 chr6 85942312 85942744 -96472498 + MLT1H LTR MaLR 1 410 -139 798 256 6 0 chr6 85943656 85943828 -96471414 + MER45A DNA AcHobo 1 173 -5 23 0 0 0 chr6 85944833 85944856 -96470386 + AT_rich Low_complexity Low_complexity 1 23 0 2142 115 3 0 chr6 85944856 85945142 -96470100 + AluSp SINE Alu 1 287 -26 24 0 0 0 chr6 85945769 85945793 -96469449 + AT_rich Low_complexity Low_complexity 1 24 0 238 326 63 14 chr6 85946024 85946245 -96468997 + HAL1b LINE L1 91 322 -1026 7454 167 22 26 chr6 85946282 85947913 -96467329 + L1P4 LINE L1 3730 5349 -816 2051 130 10 20 chr6 85947913 85948214 -96467028 + AluSx SINE Alu 1 298 -14 7454 167 22 26 chr6 85948214 85948650 -96466592 + L1P4 LINE L1 5349 5785 -380 14819 107 9 5 chr6 85948654 85950891 -96464351 + L1PA5 LINE L1 2 2248 -3898 7999 53 6 3 chr6 85950973 85952070 -96463172 + L1PA5 LINE L1 4141 5240 -906 5920 47 1 0 chr6 85952170 85952890 -96462352 + L1PA5 LINE L1 5431 6151 -3 1573 271 119 12 chr6 85952910 85953707 -96461535 + HAL1 LINE L1 1069 1950 -557 3712 255 45 18 chr6 85954033 85954350 -96460892 + L1M1 LINE L1 1982 2289 -5276 2171 120 30 41 chr6 85954350 85954718 -96460524 - THE1B LTR MaLR 0 364 1 3712 255 45 18 chr6 85954718 85955874 -96459368 + L1M1 LINE L1 2289 3495 -4070 244 136 0 0 chr6 85955877 85955921 -96459321 + L1M1 LINE L1 3583 3626 -3939 362 284 67 19 chr6 85955922 85956130 -96459112 + HAL1 LINE L1 1994 2211 -296 2072 128 0 0 chr6 85956181 85956462 -96458780 + AluSx SINE Alu 1 281 -31 1846 40 0 0 chr6 85956465 85956691 -96458551 - L1PA4 LINE L1 0 6155 5930 231 36 0 0 chr6 85956693 85956721 -96458521 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 325 312 18 28 chr6 85956752 85956861 -96458381 + HAL1 LINE L1 2337 2444 -63 1630 281 39 28 chr6 85958149 85958822 -96456420 + Charlie7 DNA MER1_type 43 722 -1890 21 0 0 0 chr6 85958913 85958934 -96456308 + AT_rich Low_complexity Low_complexity 1 21 0 418 260 276 5 chr6 85958937 85959129 -96456113 + MIR SINE MIR 8 251 -11 27 49 0 0 chr6 85959130 85959171 -96456071 + AT_rich Low_complexity Low_complexity 1 41 0 282 363 97 16 chr6 85959968 85960216 -96455026 - L2 LINE L2 -447 2867 2600 812 307 140 5 chr6 85960321 85960699 -96454543 - L2 LINE L2 0 3313 2885 243 88 0 0 chr6 85960904 85960938 -96454304 + (TG)n Simple_repeat Simple_repeat 1 34 0 241 227 133 0 chr6 85961393 85961468 -96453774 - MIR SINE MIR -16 246 162 209 241 19 0 chr6 85961711 85961765 -96453477 + GA-rich Low_complexity Low_complexity 1 55 0 2148 128 3 0 chr6 85962243 85962539 -96452703 - AluSx SINE Alu -15 297 1 389 238 269 19 chr6 85964022 85964182 -96451060 - MIR SINE MIR 0 262 63 2411 98 3 0 chr6 85964416 85964722 -96450520 + AluSx SINE Alu 1 307 -5 562 55 0 0 chr6 85964722 85964795 -96450447 - L1M1 LINE L1 -577 5727 5655 416 356 0 0 chr6 85967919 85968051 -96447191 - MLT1L LTR MaLR -137 478 347 306 267 136 51 chr6 85968089 85968265 -96446977 - MLT1J LTR MaLR -318 193 3 290 257 114 0 chr6 85968340 85968445 -96446797 + L1MEd LINE L1 46 162 -5957 330 342 176 40 chr6 85968544 85969100 -96446142 + L1MEd LINE L1 300 931 -5188 7003 60 8 3 chr6 85970091 85971456 -96443786 + L1PA8 LINE L1 4801 6171 -1 21 36 0 0 chr6 85971701 85971729 -96443513 + AT_rich Low_complexity Low_complexity 1 28 0 359 216 216 35 chr6 85972543 85972659 -96442583 + MER5B DNA MER1_type 17 153 -25 25 31 0 0 chr6 85973091 85973123 -96442119 + AT_rich Low_complexity Low_complexity 1 32 0 2314 104 3 0 chr6 85973349 85973658 -96441584 - AluSx SINE Alu -2 310 1 1129 287 35 18 chr6 85973939 85974395 -96440847 + LTR16B LTR ERVL 1 464 0 1730 162 78 25 chr6 85974463 85974821 -96440421 - MER51B LTR ERV1 0 377 1 522 242 75 25 chr6 85975003 85975164 -96440078 + MIR SINE MIR 94 262 0 1024 172 0 0 chr6 85975328 85975491 -96439751 + AluSg/x SINE Alu 127 289 -21 7793 184 24 43 chr6 85975491 85976614 -96438628 + L1PA16 LINE L1 1716 2858 -3991 1461 170 4 0 chr6 85976614 85976844 -96438398 + AluJo SINE Alu 61 291 -21 7793 184 24 43 chr6 85976844 85978506 -96436736 + L1PA16 LINE L1 2858 4485 -2364 2127 123 0 0 chr6 85978516 85978801 -96436441 + AluSc SINE Alu 5 289 -20 3094 187 19 18 chr6 85978802 85979482 -96435760 + L1PA16 LINE L1 5321 6001 -848 29680 67 3 0 chr6 85979484 85983346 -96431896 + L1P LINE L1 7 3878 -2268 4145 44 2 6 chr6 85983346 85983869 -96431373 + L1PA4 LINE L1 5632 6152 -3 4382 152 17 9 chr6 85983869 85984609 -96430633 + L1PA15 LINE L1 5280 6028 -137 2284 101 15 0 chr6 85984600 85984927 -96430315 + L1PA16 LINE L1 6086 6417 -452 * 10531 135 24 5 chr6 85984943 85987786 -96427456 - L1MA2 LINE L1 0 6304 3415 2681 141 34 2 chr6 85987786 85988230 -96427012 + L1PA16 LINE L1 6399 6860 -9 1611 157 66 3 chr6 85988471 85988757 -96426485 - AluJb SINE Alu -8 304 1 2103 116 10 6 chr6 85989186 85989497 -96425745 + AluSx SINE Alu 1 312 0 1420 191 67 7 chr6 85989657 85989776 -96425466 + AluJo SINE Alu 1 111 -201 186 71 0 0 chr6 85989776 85989804 -96425438 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 1420 191 67 7 chr6 85989804 85989967 -96425275 + AluJo SINE Alu 111 300 -12 13131 125 67 29 chr6 85990037 85990947 -96424295 - Tigger1 DNA MER2_type 0 2418 1544 2353 93 10 0 chr6 85990947 85991257 -96423985 - AluSq SINE Alu 0 313 1 13131 125 67 29 chr6 85991257 85991874 -96423368 - Tigger1 DNA MER2_type -874 1544 952 2138 98 10 0 chr6 85991874 85992169 -96423073 + AluSq SINE Alu 1 298 -15 13131 125 67 29 chr6 85992169 85992970 -96422272 - Tigger1 DNA MER2_type -1466 952 1 242 348 73 30 chr6 85993251 85993415 -96421827 - MIR3 SINE MIR -35 173 3 25 31 0 0 chr6 85996622 85996654 -96418588 + AT_rich Low_complexity Low_complexity 1 32 0 27 62 0 0 chr6 85997153 85997201 -96418041 + AT_rich Low_complexity Low_complexity 1 48 0 252 59 0 0 chr6 85998944 85998978 -96416264 + (TA)n Simple_repeat Simple_repeat 2 35 0 210 37 0 0 chr6 85999007 85999034 -96416208 + (T)n Simple_repeat Simple_repeat 1 27 0 240 354 42 0 chr6 86000002 86000098 -96415144 - MIR SINE MIR -75 133 34 2162 95 0 0 chr6 86000663 86000974 -96414268 + AluSq SINE Alu 1 311 0 23 33 0 0 chr6 86001480 86001510 -96413732 + AT_rich Low_complexity Low_complexity 1 30 0 647 160 100 0 chr6 86001532 86001682 -96413560 + Charlie5 DNA MER1_type 2460 2624 0 1803 171 3 16 chr6 86002167 86002476 -96412766 + AluSx SINE Alu 1 305 -7 211 372 66 33 chr6 86002480 86002663 -96412579 - L2 LINE L2 -197 3075 2887 441 337 54 48 chr6 86002821 86003153 -96412089 - L2 LINE L2 -612 2702 2369 547 144 0 0 chr6 86003537 86003627 -96411615 - AluJ/FRAM SINE Alu -3 309 220 203 316 66 0 chr6 86004204 86004280 -96410962 - MIR SINE MIR -180 82 2 1597 188 11 3 chr6 86006969 86007256 -96407986 - AluJb SINE Alu -23 289 1 1195 202 8 26 chr6 86007402 86007669 -96407573 - L1MEd LINE L1 -1949 4180 3919 1284 220 149 50 chr6 86007674 86008141 -96407101 + MER74B LTR ERVL 5 525 -97 1868 171 3 7 chr6 86008141 86008451 -96406791 - AluJb SINE Alu -3 309 1 1284 220 149 50 chr6 86008451 86008478 -96406764 + MER74B LTR ERVL 525 548 -74 2879 244 71 26 chr6 86008553 86009609 -96405633 - L1MEd LINE L1 -2202 3927 2824 213 289 79 44 chr6 86009689 86009803 -96405439 + L2 LINE L2 3195 3312 -1 185 220 119 0 chr6 86010390 86010449 -96404793 + MIR3 SINE MIR 115 180 -28 2261 111 0 3 chr6 86010603 86010910 -96404332 + AluSc SINE Alu 4 309 0 696 245 82 33 chr6 86010922 86011228 -96404014 - L1MEd LINE L1 -4924 1195 875 331 215 13 13 chr6 86011295 86011374 -96403868 + HsTC2 DNA Tc2 1801 1879 -19 372 351 170 12 chr6 86011560 86011819 -96403423 - L1MEd LINE L1 -5578 541 242 290 247 0 0 chr6 86011920 86011997 -96403245 + L1MEd LINE L1 103 179 -5940 1119 98 0 0 chr6 86012205 86012348 -96402894 - AluSq/x SINE Alu -170 143 1 2075 92 0 26 chr6 86012564 86012869 -96402373 - AluY SINE Alu -14 297 1 186 280 252 28 chr6 86013006 86013113 -96402129 - MIR3 SINE MIR -72 136 6 446 296 66 47 chr6 86013399 86013612 -96401630 + L2 LINE L2 3097 3313 0 1009 212 97 18 chr6 86014353 86014570 -96400672 + Tigger7 DNA MER2_type 1 234 -2253 582 200 9 0 chr6 86014571 86014676 -96400566 + Tigger7 DNA MER2_type 2382 2487 0 23 0 7 0 chr6 86014906 86014962 -96400280 + AT_rich Low_complexity Low_complexity 1 23 0 446 194 0 125 chr6 86015098 86015242 -96400000 + FLAM_A SINE Alu 1 126 -7 189 0 0 0 chr6 86019634 86019655 -96395587 + (T)n Simple_repeat Simple_repeat 1 21 0 1139 94 0 19 chr6 86019935 86020095 -96395147 + AluSc SINE Alu 85 241 -68 680 69 0 0 chr6 86020095 86020182 -96395060 + AluSc SINE Alu 207 293 -16 24 53 0 0 chr6 86020324 86020362 -96394880 + AT_rich Low_complexity Low_complexity 1 38 0 198 321 152 18 chr6 86021521 86021633 -96393609 + L2 LINE L2 3137 3263 -9 278 148 19 0 chr6 86022030 86022084 -96393158 + GA-rich Low_complexity Low_complexity 4 58 0 37 39 0 0 chr6 86023914 86023965 -96391277 + AT_rich Low_complexity Low_complexity 1 51 0 270 298 21 99 chr6 86025023 86025214 -96390028 + MIR SINE MIR 37 212 -50 223 289 37 96 chr6 86025527 86025662 -96389580 + MIR SINE MIR 45 171 -91 256 386 104 24 chr6 86033602 86033900 -96381342 + L2 LINE L2 2448 2769 -545 247 340 122 6 chr6 86034999 86035155 -96380087 + L2 LINE L2 2590 2763 -551 28 29 0 0 chr6 86035335 86035370 -96379872 + AT_rich Low_complexity Low_complexity 1 35 0 356 211 252 8 chr6 86035420 86035543 -96379699 - MIR SINE MIR -28 234 82 314 290 60 10 chr6 86035873 86035973 -96379269 - MIR3 SINE MIR 0 208 104 299 202 64 28 chr6 86036440 86036549 -96378693 + L1MC4 LINE L1 7930 8042 0 180 0 0 0 chr6 86037471 86037491 -96377751 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2280 60 0 3 chr6 86038557 86038868 -96376374 - AluY SINE Alu 0 310 1 21 0 0 0 chr6 86039094 86039115 -96376127 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr6 86039732 86039788 -96375454 + AT_rich Low_complexity Low_complexity 1 56 0 1285 209 0 74 chr6 86039991 86040317 -96374925 + AluJo SINE Alu 1 302 -10 535 259 138 45 chr6 86040785 86041009 -96374233 - MIR SINE MIR -15 247 3 821 216 82 10 chr6 86041064 86041258 -96373984 - MIR SINE MIR -7 255 48 24 32 0 0 chr6 86041335 86041366 -96373876 + AT_rich Low_complexity Low_complexity 1 31 0 3647 109 24 3 chr6 86041366 86041943 -96373299 - L1MA2 LINE L1 0 6304 5716 2103 116 0 3 chr6 86041943 86042236 -96373006 + AluSx SINE Alu 1 292 -20 853 120 0 0 chr6 86042530 86042647 -96372595 + AluSg/x SINE Alu 177 293 -17 596 101 3 0 chr6 86042651 86042741 -96372501 - L1MA2 LINE L1 -571 5732 5641 375 57 19 0 chr6 86043157 86043210 -96372032 + MADE1 DNA Mariner 1 54 -26 22 0 0 0 chr6 86044003 86044025 -96371217 + AT_rich Low_complexity Low_complexity 1 22 0 337 338 37 0 chr6 86044442 86044578 -96370664 + MIR SINE MIR 71 211 -51 555 99 0 0 chr6 86044724 86044795 -96370447 - tRNA-Phe-TTC tRNA tRNA -5 71 1 2092 171 34 44 chr6 86045876 86046286 -96368956 - MER47B DNA MER2_type 0 418 13 723 143 42 8 chr6 86046750 86046869 -96368373 + MER20 DNA MER1_type 1 123 -96 30 0 0 0 chr6 86047374 86047404 -96367838 + AT_rich Low_complexity Low_complexity 1 30 0 480 130 26 0 chr6 86047556 86047633 -96367609 + MER5A DNA MER1_type 27 105 -84 24 0 0 0 chr6 86049497 86049521 -96365721 + AT_rich Low_complexity Low_complexity 1 24 0 2118 106 0 0 chr6 86050620 86050902 -96364340 - AluSg SINE Alu -25 285 4 22 0 0 0 chr6 86050907 86050929 -96364313 + AT_rich Low_complexity Low_complexity 1 22 0 604 313 35 31 chr6 86051238 86051497 -96363745 - MIR SINE MIR 0 262 3 243 301 183 0 chr6 86051613 86051706 -96363536 + L2 LINE L2 3201 3310 -3 21 95 0 0 chr6 86051897 86051960 -96363282 + AT_rich Low_complexity Low_complexity 1 63 0 321 277 206 5 chr6 86052956 86053140 -96362102 + MIR SINE MIR 14 234 -28 2250 77 10 14 chr6 86053967 86054264 -96360978 + AluY SINE Alu 1 296 -15 356 194 28 0 chr6 86054423 86054495 -96360747 + Tigger2 DNA MER2_type 2 75 -2643 896 249 0 6 chr6 86054526 86054703 -96360539 - MER8 DNA MER2_type -62 177 2 974 251 101 48 chr6 86054748 86055243 -96359999 - HAL1 LINE L1 -344 2163 1643 26 50 0 0 chr6 86055655 86055695 -96359547 + AT_rich Low_complexity Low_complexity 1 40 0 407 212 80 0 chr6 86056373 86056486 -96358756 + L1ME3 LINE L1 6043 6163 -1 42139 37 22 1 chr6 86057630 86063644 -96351598 + L1PA3 LINE L1 2 6146 -9 1135 207 69 42 chr6 86064954 86065288 -96349954 - MER2 DNA MER2_type 0 344 2 462 252 19 0 chr6 86066120 86066223 -96349019 - L2 LINE L2 -528 2786 2682 496 233 142 0 chr6 86066230 86066350 -96348892 + MER58A DNA MER1_type 1 137 0 1004 295 42 26 chr6 86066392 86066772 -96348470 - L2 LINE L2 -640 2674 2289 223 291 0 0 chr6 86067338 86067393 -96347849 + L2 LINE L2 3006 3060 -212 207 340 0 0 chr6 86068107 86068213 -96347029 + T-rich Low_complexity Low_complexity 1 106 0 * 220 256 13 13 chr6 86068155 86068233 -96347009 + CT-rich Low_complexity Low_complexity 3 80 0 1683 132 4 8 chr6 86070783 86071034 -96344208 + AluSq SINE Alu 5 254 -59 27 0 0 0 chr6 86071044 86071071 -96344171 + AT_rich Low_complexity Low_complexity 1 27 0 505 341 76 18 chr6 86071606 86071829 -96343413 - MIR SINE MIR 0 262 27 26 0 0 0 chr6 86071911 86071937 -96343305 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr6 86072424 86072459 -96342783 + AT_rich Low_complexity Low_complexity 1 35 0 343 285 128 28 chr6 86073099 86073278 -96341964 + MIR SINE MIR 20 216 -46 22 0 0 0 chr6 86073578 86073600 -96341642 + AT_rich Low_complexity Low_complexity 1 22 0 777 145 94 14 chr6 86073653 86073791 -96341451 + AluJo SINE Alu 126 274 -38 1221 208 21 45 chr6 86074357 86074646 -96340596 + AluJo SINE Alu 1 282 -30 207 100 0 0 chr6 86074861 86074891 -96340351 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 251 303 33 41 chr6 86074910 86075032 -96340210 - L1MC/D LINE L1 -2164 5644 5524 203 61 30 0 chr6 86075476 86075509 -96339733 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 496 138 46 100 chr6 86077085 86077189 -96338053 - L1MD1 LINE L1 0 6242 6145 2123 84 10 7 chr6 86077189 86077486 -96337756 - AluY SINE Alu -13 298 1 496 138 46 100 chr6 86077486 86077511 -96337731 - L1MD1 LINE L1 -97 6145 6120 520 235 7 52 chr6 86077512 86077665 -96337577 - L1MD2 LINE L1 -79 6280 6135 12865 148 56 13 chr6 86077683 86079520 -96335722 + Tigger1 DNA MER2_type 31 1987 -431 2155 123 0 0 chr6 86079520 86079821 -96335421 + AluY SINE Alu 1 301 -10 12865 148 56 13 chr6 86079821 86080273 -96334969 + Tigger1 DNA MER2_type 1987 2418 0 3743 167 31 10 chr6 86080276 86081003 -96334239 - L1MD2 LINE L1 -260 5982 5237 36 62 0 0 chr6 86082271 86082335 -96332907 + AT_rich Low_complexity Low_complexity 1 64 0 571 203 20 20 chr6 86083376 86083529 -96331713 - L1ME4a LINE L1 -244 5877 5725 328 243 154 29 chr6 86083914 86084050 -96331192 - MIR SINE MIR -42 220 68 589 315 199 6 chr6 86084135 86084462 -96330780 - L2 LINE L2 -2 3311 2922 23 68 0 0 chr6 86084876 86084920 -96330322 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr6 86085819 86085848 -96329394 + AT_rich Low_complexity Low_complexity 1 29 0 857 143 17 16 chr6 86087105 86087344 -96327898 + CT-rich Low_complexity Low_complexity 1 239 0 186 143 0 0 chr6 86087347 86087382 -96327860 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 594 276 20 37 chr6 86087391 86087637 -96327605 - L1MC4 LINE L1 -364 7678 7437 361 373 53 0 chr6 86088279 86088429 -96326813 + MIR SINE MIR 23 180 -82 260 274 0 0 chr6 86088704 86088766 -96326476 + MLT1K LTR MaLR 511 572 -16 2301 143 5 16 chr6 86088902 86089281 -96325961 - THE1C LTR MaLR 0 375 1 190 346 74 12 chr6 86089297 86089378 -96325864 + L2 LINE L2 2802 2887 -427 2528 222 50 41 chr6 86089389 86090150 -96325092 - L1ME3 LINE L1 -2 6160 5393 419 271 32 4 chr6 86090136 86090415 -96324827 + L1M4 LINE L1 4623 4947 -1199 * 608 194 9 0 chr6 86090438 86090546 -96324696 + FLAM_A SINE Alu 1 109 -33 189 74 0 0 chr6 86090551 86090578 -96324664 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 587 213 87 83 chr6 86090583 86090769 -96324473 + L1M4 LINE L1 5003 5192 -954 2276 90 3 10 chr6 86090769 86091080 -96324162 + AluSg SINE Alu 1 309 -1 587 213 87 83 chr6 86091080 86091193 -96324049 + L1M4 LINE L1 5192 5303 -843 238 141 42 42 chr6 86091925 86091996 -96323246 + (TTTA)n Simple_repeat Simple_repeat 3 73 0 1540 238 108 41 chr6 86092035 86092625 -96322617 + MLT1G LTR MaLR 2 574 -16 2060 140 0 0 chr6 86092633 86092941 -96322301 + AluSx SINE Alu 1 308 -4 1388 212 22 4 chr6 86093498 86093776 -96321466 + AluJb SINE Alu 4 286 -26 2077 230 39 112 chr6 86094035 86095042 -96320200 - L1M4 LINE L1 -1781 4365 3433 1256 233 43 12 chr6 86095063 86095385 -96319857 - L1MEc LINE L1 -6029 367 36 222 128 0 0 chr6 86095756 86095795 -96319447 + (T)n Simple_repeat Simple_repeat 1 39 0 2898 144 13 19 chr6 86097119 86097648 -96317594 - L1MA9 LINE L1 0 6312 5787 24 32 0 0 chr6 86097870 86097901 -96317341 + GC_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr6 86098120 86098144 -96317098 + (GGA)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr6 86098253 86098278 -96316964 + GC_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr6 86101784 86101809 -96313433 + (CA)n Simple_repeat Simple_repeat 2 26 0 391 313 117 43 chr6 86101823 86102149 -96313093 - L3b LINE CR1 -72 1511 1162 245 186 14 0 chr6 86103850 86103920 -96311322 + CT-rich Low_complexity Low_complexity 4 74 0 23 54 0 0 chr6 86104449 86104486 -96310756 + AT_rich Low_complexity Low_complexity 1 37 0 28 86 0 0 chr6 86105192 86105262 -96309980 + AT_rich Low_complexity Low_complexity 1 70 0 323 274 37 18 chr6 86105512 86105676 -96309566 - L1MC5 LINE L1 -36 7925 7759 244 283 50 0 chr6 86105768 86105828 -96309414 - L2 LINE L2 -6 3266 3204 2591 101 6 8 chr6 86106814 86107179 -96308063 + THE1B LTR MaLR 1 364 0 352 216 247 0 chr6 86107388 86107485 -96307757 - MIR3 SINE MIR -4 204 84 485 316 134 10 chr6 86107785 86107994 -96307248 + MIR SINE MIR 12 246 -16 695 318 19 5 chr6 86108013 86108227 -96307015 - MIR SINE MIR -31 231 15 223 257 0 54 chr6 86108251 86108325 -96306917 + MIR SINE MIR 193 262 0 294 250 57 79 chr6 86108398 86108538 -96306704 - MIR SINE MIR -114 148 12 26 50 0 0 chr6 86109816 86109856 -96305386 + GC_rich Low_complexity Low_complexity 1 40 0 183 80 0 0 chr6 86109896 86109921 -96305321 + (CTCG)n Simple_repeat Simple_repeat 2 26 0 186 43 0 0 chr6 86112826 86112849 -96302393 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 424 302 0 31 chr6 86112858 86112987 -96302255 + MIR3 SINE MIR 30 154 -54 228 217 33 76 chr6 86113945 86114037 -96301205 + MIR SINE MIR 120 207 -55 1413 161 90 21 chr6 86114218 86114497 -96300745 + AluJb SINE Alu 3 300 -12 368 226 29 3 chr6 86116044 86116199 -96299043 - MER2 DNA MER2_type 0 345 142 951 181 11 11 chr6 86116299 86116481 -96298761 - MER2 DNA MER2_type -163 182 1 28 29 0 0 chr6 86117332 86117367 -96297875 + AT_rich Low_complexity Low_complexity 1 35 0 351 330 171 6 chr6 86117528 86117710 -96297532 + MIR SINE MIR 32 242 -20 229 143 48 16 chr6 86117891 86117975 -96297267 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 417 330 103 0 chr6 86118444 86118629 -96296613 - MIR SINE MIR -34 228 25 2093 141 0 0 chr6 86118632 86118938 -96296304 - AluSx SINE Alu -4 308 3 457 275 104 16 chr6 86119435 86119628 -96295614 + MER58C DNA MER1_type 1 210 -5 1406 186 36 30 chr6 86119934 86120235 -96295007 + AluJo SINE Alu 1 303 -9 390 286 127 61 chr6 86120647 86120860 -96294382 + MIR SINE MIR 32 258 -4 25 0 0 0 chr6 86121058 86121083 -96294159 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 86121284 86121306 -96293936 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr6 86121314 86121356 -96293886 + (TG)n Simple_repeat Simple_repeat 1 42 0 1435 293 117 69 chr6 86121673 86123171 -96292071 - L2 LINE L2 -420 2894 1326 2035 89 17 10 chr6 86123406 86123698 -96291544 + AluSx SINE Alu 1 294 -18 265 289 105 26 chr6 86123844 86123958 -96291284 - L2 LINE L2 -1 3271 3149 1566 181 166 13 chr6 86125338 86125791 -96289451 - Charlie1b DNA MER1_type -1 522 1 194 329 27 82 chr6 86127119 86127265 -96287977 + L2 LINE L2 2602 2739 -575 306 0 0 0 chr6 86127495 86127529 -96287713 + (TA)n Simple_repeat Simple_repeat 1 34 0 298 178 89 44 chr6 86127605 86127695 -96287547 - L1MEc LINE L1 -4094 2513 2420 * 448 230 135 3 chr6 86127662 86127904 -96287338 - L1M3c LINE L1 -4556 1801 1269 809 241 45 27 chr6 86128360 86128584 -96286658 - MIR SINE MIR -1 261 34 24 32 0 0 chr6 86128681 86128712 -96286530 + AT_rich Low_complexity Low_complexity 1 31 0 455 230 0 11 chr6 86128771 86128858 -96286384 - Tigger7 DNA MER2_type -6 2481 2396 1048 210 37 30 chr6 86129553 86129847 -96285395 - L1MD3 LINE L1 0 7995 7654 186 321 25 12 chr6 86129974 86130055 -96285187 + L2 LINE L2 2308 2389 -925 262 323 57 24 chr6 86130218 86130342 -96284900 - L2 LINE L2 0 3313 3186 1099 186 15 10 chr6 86130392 86130596 -96284646 - MER20 DNA MER1_type 0 219 15 210 374 50 20 chr6 86130704 86130902 -96284340 + L2 LINE L2 2826 3029 -243 190 257 14 43 chr6 86130964 86131034 -96284208 + L2 LINE L2 3169 3236 -77 25 83 0 0 chr6 86132435 86132495 -96282747 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr6 86132835 86132858 -96282384 + AT_rich Low_complexity Low_complexity 1 23 0 2000 116 14 7 chr6 86133583 86133875 -96281367 - AluSx SINE Alu -18 294 1 196 273 45 0 chr6 86133878 86133922 -96281320 - MIR SINE MIR -63 145 100 769 296 77 36 chr6 86134381 86134947 -96280295 + L2 LINE L2 2719 3303 -10 23 97 0 0 chr6 86134996 86135068 -96280174 + AT_rich Low_complexity Low_complexity 1 72 0 766 243 132 58 chr6 86136421 86136664 -96278578 + MIR SINE MIR 2 262 0 1982 117 38 10 chr6 86137550 86137841 -96277401 + AluSx SINE Alu 3 301 -11 348 318 87 40 chr6 86138844 86139143 -96276099 + L1M4 LINE L1 4771 5083 -1063 1937 127 6 47 chr6 86139989 86140311 -96274931 - AluSq SINE Alu 0 313 5 990 247 75 60 chr6 86140363 86140900 -96274342 - L2 LINE L2 -49 3264 2725 266 319 14 0 chr6 86140933 86141005 -96274237 - L2 LINE L2 -224 3048 2976 189 132 26 0 chr6 86143125 86143163 -96272079 - L2 LINE L2 -6 3307 3269 23 0 0 0 chr6 86143376 86143399 -96271843 + AT_rich Low_complexity Low_complexity 1 23 0 258 292 67 45 chr6 86143593 86143682 -96271560 + MIR SINE MIR 21 111 -97 1088 236 14 0 chr6 86145638 86145850 -96269392 + MER58A DNA MER1_type 1 215 -9 597 255 51 60 chr6 86146572 86146788 -96268454 + MIR SINE MIR 5 218 -44 25 65 0 0 chr6 86146837 86146883 -96268359 + AT_rich Low_complexity Low_complexity 1 46 0 248 329 110 82 chr6 86147272 86147564 -96267678 - L2 LINE L2 0 3272 2973 470 334 226 11 chr6 86147703 86148414 -96266828 - L2 LINE L2 -537 2777 1862 1696 182 66 17 chr6 86148414 86148761 -96266481 + MLT1A1 LTR MaLR 1 364 -1 470 334 226 11 chr6 86148761 86148875 -96266367 - L2 LINE L2 -1452 1862 1774 218 355 129 16 chr6 86148977 86149101 -96266141 + L2 LINE L2 3134 3271 -1 285 399 75 0 chr6 86149193 86149326 -96265916 + L2 LINE L2 2854 2996 -317 21 0 0 0 chr6 86149326 86149347 -96265895 + AT_rich Low_complexity Low_complexity 1 21 0 1375 253 117 74 chr6 86149383 86149960 -96265282 + L1MC4 LINE L1 7272 7889 -153 2407 75 3 3 chr6 86149960 86150266 -96264976 - AluY SINE Alu -5 306 1 1375 253 117 74 chr6 86150266 86150422 -96264820 + L1MC4 LINE L1 7889 8037 -5 580 192 72 67 chr6 86151533 86151726 -96263516 - LTR45 LTR ERV1 0 525 296 13810 133 50 13 chr6 86152634 86154965 -96260277 + Tigger1 DNA MER2_type 1 2417 -1 2065 141 0 0 chr6 86155663 86155988 -96259254 + AluSx SINE Alu 1 312 0 24 67 0 0 chr6 86156038 86156083 -96259159 + AT_rich Low_complexity Low_complexity 1 45 0 384 264 0 50 chr6 86156134 86156255 -96258987 + L2 LINE L2 2163 2277 -1037 182 274 94 34 chr6 86156255 86156372 -96258870 + L2 LINE L2 2667 2790 -524 220 205 0 0 chr6 86156893 86156932 -96258310 + (CATA)n Simple_repeat Simple_repeat 3 41 0 2214 155 8 13 chr6 86156932 86157319 -96257923 - L1M2 LINE L1 -524 5788 5404 2128 152 60 31 chr6 86157320 86157833 -96257409 - MLT2A2 LTR ERVL -1 553 1 2359 185 35 8 chr6 86157838 86158320 -96256922 - L1M2 LINE L1 -743 5403 4909 2231 73 0 48 chr6 86158339 86158655 -96256587 + AluY SINE Alu 1 301 -10 402 241 0 23 chr6 86158686 86158809 -96256433 - L1M4 LINE L1 -1225 4921 4804 1420 169 99 0 chr6 86160093 86160365 -96254877 - AluSx SINE Alu -13 299 1 617 325 94 0 chr6 86161029 86161284 -96253958 - HsTC2 DNA Tc2 -1013 885 607 314 281 41 58 chr6 86163061 86163182 -96252060 + MIR SINE MIR 65 183 -79 533 277 202 20 chr6 86163391 86163683 -96251559 + L3b LINE CR1 1104 1448 -135 180 111 0 0 chr6 86163925 86163952 -96251290 + (T)n Simple_repeat Simple_repeat 1 27 0 348 363 143 25 chr6 86164251 86164615 -96250627 - L1MC/D LINE L1 -1988 5820 5414 329 280 67 13 chr6 86164757 86164907 -96250335 - L1M4 LINE L1 -1533 4613 4456 226 217 0 0 chr6 86165260 86165306 -96249936 - L2 LINE L2 -2 3270 3225 5362 202 57 50 chr6 86165314 86166454 -96248788 + Charlie1a DNA MER1_type 6 1160 -1601 2105 99 40 7 chr6 86166454 86166757 -96248485 + AluSq SINE Alu 1 313 0 5362 202 57 50 chr6 86166757 86167056 -96248186 + Charlie1a DNA MER1_type 1160 1455 0 539 338 95 7 chr6 86167058 86167593 -96247649 - L2 LINE L2 -61 3252 2664 1895 320 210 44 chr6 86167593 86169259 -96245983 + L2 LINE L2 1074 3061 -252 439 262 61 30 chr6 86169262 86169426 -96245816 + HAL1 LINE L1 2 170 -2337 326 23 23 0 chr6 86169435 86169478 -96245764 + (CA)n Simple_repeat Simple_repeat 2 45 0 331 213 27 153 chr6 86169484 86169667 -96245575 + L2 LINE L2 3092 3251 -62 665 259 206 7 chr6 86169701 86170002 -96245240 - L2 LINE L2 -862 2452 2092 380 171 29 9 chr6 86170072 86170177 -96245065 - Charlie7 DNA MER1_type -66 2546 2440 1649 237 58 38 chr6 86170179 86170736 -96244506 + HAL1 LINE L1 2 569 -1938 198 322 66 41 chr6 86171295 86171416 -96243826 + L2 LINE L2 2953 3076 -196 3227 275 75 34 chr6 86171863 86172024 -96243218 + L1MEc LINE L1 37 190 -6206 528 200 56 24 chr6 86172024 86172149 -96243093 - FLAM_A SINE Alu -3 130 2 3227 275 75 34 chr6 86172149 86172331 -96242911 + L1MEc LINE L1 190 363 -6033 189 0 0 0 chr6 86172331 86172352 -96242890 + (GA)n Simple_repeat Simple_repeat 2 22 0 3227 275 75 34 chr6 86172352 86173551 -96241691 + L1MEc LINE L1 363 1643 -4753 3520 272 80 39 chr6 86173655 86176218 -96239024 + L1MCc LINE L1 99 2986 -4136 670 153 42 183 chr6 86176240 86176616 -96238626 - MER33 DNA MER1_type -2 361 3 9059 234 62 23 chr6 86176616 86177921 -96237321 + L1MCc LINE L1 2992 4245 -2716 1845 135 3 27 chr6 86177921 86178217 -96237025 + AluSx SINE Alu 1 289 -23 9059 234 62 23 chr6 86178217 86180361 -96234881 + L1MCc LINE L1 4245 6540 -421 7555 132 35 6 chr6 86180361 86181554 -96233688 + HSMAR2 DNA Mariner 2 1229 -73 249 356 11 0 chr6 86181683 86181773 -96233469 + L2 LINE L2 3221 3311 -2 6909 183 15 14 chr6 86182666 86184046 -96231196 + L1PA13 LINE L1 1101 2493 -4304 14756 193 42 7 chr6 86184061 86184413 -96230829 - L1PB1 LINE L1 0 6867 6529 519 31 0 0 chr6 86184413 86184478 -96230764 + (TA)n Simple_repeat Simple_repeat 1 65 0 14756 193 42 7 chr6 86184478 86187860 -96227382 - L1PB1 LINE L1 -338 6529 2590 2114 59 0 0 chr6 86187860 86188130 -96227112 + L1PA7 LINE L1 5881 6150 -4 14756 193 42 7 chr6 86188130 86190809 -96224433 - L1PB1 LINE L1 -4277 2590 6 17772 165 13 19 chr6 86190813 86194359 -96220883 + L1PA13 LINE L1 2483 6006 -808 1737 92 24 8 chr6 86194359 86194607 -96220635 + L1PA10 LINE L1 5909 6163 -5 17772 165 13 19 chr6 86194607 86195412 -96219830 + L1PA13 LINE L1 6006 6814 0 609 308 169 8 chr6 86195919 86196199 -96219043 - L2 LINE L2 -4 3309 3075 345 47 0 0 chr6 86196199 86196242 -96219000 + (TG)n Simple_repeat Simple_repeat 1 43 0 609 308 169 8 chr6 86196242 86196468 -96218774 - L2 LINE L2 -238 3075 2715 214 147 0 0 chr6 86196613 86196647 -96218595 + L2 LINE L2 3239 3272 0 5529 68 3 3 chr6 86196961 86197684 -96217558 - L1PA6 LINE L1 0 6154 5432 349 295 66 30 chr6 86199642 86199808 -96215434 - L2 LINE L2 -3 3310 3139 192 40 0 0 chr6 86200320 86200345 -96214897 + (GA)n Simple_repeat Simple_repeat 2 26 0 36 0 0 0 chr6 86200538 86200574 -96214668 + AT_rich Low_complexity Low_complexity 1 36 0 239 336 109 44 chr6 86200672 86201056 -96214186 - L2 LINE L2 -1729 1585 1177 682 184 102 46 chr6 86201370 86201566 -96213676 + MIR SINE MIR 36 242 -20 556 308 94 34 chr6 86202351 86202799 -96212443 + L1M4 LINE L1 3560 4034 -2112 841 283 72 40 chr6 86202929 86203536 -96211706 + L1M4 LINE L1 4359 4985 -1161 31 44 0 0 chr6 86203555 86203600 -96211642 + AT_rich Low_complexity Low_complexity 1 45 0 307 315 7 35 chr6 86203712 86203855 -96211387 - MLT1L LTR MaLR 0 615 477 31 0 0 0 chr6 86204425 86204456 -96210786 + AT_rich Low_complexity Low_complexity 1 31 0 32 81 0 0 chr6 86204509 86204583 -96210659 + AT_rich Low_complexity Low_complexity 1 74 0 22 35 0 0 chr6 86204622 86204651 -96210591 + AT_rich Low_complexity Low_complexity 1 29 0 759 280 16 5 chr6 86205430 86205619 -96209623 + MIR SINE MIR 72 262 0 225 318 15 0 chr6 86206189 86206255 -96208987 + L3 LINE CR1 1495 1561 -16 24 32 0 0 chr6 86206462 86206493 -96208749 + AT_rich Low_complexity Low_complexity 1 31 0 674 317 29 15 chr6 86206849 86207178 -96208064 - LTR16A LTR ERVL 0 450 48 301 281 73 0 chr6 86209381 86209463 -96205779 + MIR SINE MIR 64 151 -111 421 267 37 37 chr6 86209477 86209638 -96205604 + MER69A DNA AcHobo 2 162 -15 250 230 27 68 chr6 86209646 86209720 -96205522 + MIR SINE MIR 158 228 -34 8491 121 2 17 chr6 86210257 86211577 -96203665 - HSMAR2 DNA Mariner -1 1301 1 22 0 0 0 chr6 86212592 86212614 -96202628 + AT_rich Low_complexity Low_complexity 1 22 0 207 161 0 0 chr6 86212854 86212885 -96202357 + (CA)n Simple_repeat Simple_repeat 2 32 0 294 289 10 10 chr6 86212976 86213073 -96202169 - LTR67 LTR ERVL -17 540 444 369 348 137 0 chr6 86213660 86213821 -96201421 + MIR3 SINE MIR 25 207 -1 627 298 105 17 chr6 86214505 86214743 -96200499 - MIR SINE MIR 0 262 4 381 78 0 0 chr6 86215726 86215777 -96199465 - MER70A LTR ERVL 0 472 422 445 371 32 20 chr6 86215780 86216033 -96199209 + L2 LINE L2 2907 3162 -110 2702 99 11 5 chr6 86216303 86216676 -96198566 + THE1C LTR MaLR 1 375 0 269 235 59 0 chr6 86218447 86218515 -96196727 - MIR SINE MIR -119 143 72 29 84 0 0 chr6 86218574 86218645 -96196597 + AT_rich Low_complexity Low_complexity 1 71 0 1980 143 10 0 chr6 86219269 86219563 -96195679 - AluSx SINE Alu -13 299 3 5266 156 77 22 chr6 86219564 86219948 -96195294 + L1MC3 LINE L1 6715 7076 -709 1726 161 11 0 chr6 86219948 86220228 -96195014 + AluJb SINE Alu 1 283 -29 249 157 39 39 chr6 86220184 86220228 -96195014 + Alu SINE Alu 236 296 -4 235 0 0 0 chr6 86220228 86220254 -96194988 + (TAAA)n Simple_repeat Simple_repeat 2 164 0 5266 156 77 22 chr6 86220254 86220883 -96194359 + L1MC3 LINE L1 7075 7785 0 1817 222 35 46 chr6 86220880 86221505 -96193737 + L1MC5 LINE L1 7300 7917 -44 786 198 19 6 chr6 86223727 86223884 -96191358 - MLT1D LTR MaLR 0 505 347 911 232 16 37 chr6 86223896 86224142 -96191100 - MLT1D LTR MaLR -264 241 1 2297 105 3 0 chr6 86224760 86225066 -96190176 + AluSg SINE Alu 2 308 -2 311 212 260 48 chr6 86225188 86225334 -96189908 + MER69A DNA AcHobo 1 177 0 604 273 27 77 chr6 86225530 86225830 -96189412 + MLT1I LTR MaLR 107 391 -18 2040 105 6 40 chr6 86226554 86226689 -96188553 + AluSq SINE Alu 1 139 -174 2487 67 3 10 chr6 86226689 86227003 -96188239 + AluSp SINE Alu 1 312 -1 2040 105 6 40 chr6 86227003 86227190 -96188052 + AluSq SINE Alu 139 312 -1 407 327 79 9 chr6 86228039 86228213 -96187029 + MIR SINE MIR 23 216 -46 1382 248 124 28 chr6 86228213 86228672 -96186570 + MLT1D LTR MaLR 1 503 -2 407 327 79 9 chr6 86228672 86228711 -96186531 + MIR SINE MIR 216 251 -11 272 263 141 0 chr6 86228967 86229066 -96186176 - MER20B DNA MER1_type -627 156 44 22 56 0 0 chr6 86229350 86229386 -96185856 + AT_rich Low_complexity Low_complexity 1 36 0 600 279 66 27 chr6 86229527 86229785 -96185457 + L1ME4a LINE L1 5592 5859 -262 21 36 0 0 chr6 86229802 86229830 -96185412 + AT_rich Low_complexity Low_complexity 1 28 0 5132 177 34 39 chr6 86229837 86230223 -96185019 + L1MB2 LINE L1 4169 4555 -1616 1085 24 0 0 chr6 86230223 86230350 -96184892 - L1PB1 LINE L1 -1 6150 6024 5132 177 34 39 chr6 86230350 86230528 -96184714 + L1MB2 LINE L1 4555 4732 -1439 2104 113 0 0 chr6 86230528 86230837 -96184405 + AluY SINE Alu 1 309 0 5132 177 34 39 chr6 86230837 86231890 -96183352 + L1MB2 LINE L1 4732 5788 -383 1343 181 122 3 chr6 86231890 86231982 -96183260 + MER44D DNA MER2_type 1 81 -2410 357 24 0 0 chr6 86231982 86232024 -96183218 + (GA)n Simple_repeat Simple_repeat 1 42 0 1343 181 122 3 chr6 86232024 86232234 -96183008 + MER44D DNA MER2_type 81 609 0 5132 177 34 39 chr6 86232234 86232294 -96182948 + L1MB2 LINE L1 5788 5847 -324 1850 163 3 0 chr6 86232294 86232577 -96182665 + AluSx SINE Alu 6 289 -23 5132 177 34 39 chr6 86232577 86232888 -96182354 + L1MB2 LINE L1 5847 6145 -26 286 230 175 16 chr6 86233146 86233272 -96181970 + L1ME4a LINE L1 5937 6082 -39 3861 121 30 3 chr6 86233274 86233877 -96181365 + Tigger1 DNA MER2_type 1800 2418 0 1784 185 40 42 chr6 86233877 86234232 -96181010 - L1MB8 LINE L1 -33 6145 5790 1594 209 70 11 chr6 86234232 86234606 -96180636 + MSTD LTR MaLR 1 396 0 1784 185 40 42 chr6 86234606 86234677 -96180565 - L1MB8 LINE L1 -388 5790 5720 281 284 32 0 chr6 86235827 86235922 -96179320 - MLT1J2 LTR MaLR -7 443 346 419 174 246 29 chr6 86236009 86236147 -96179095 - MLT1J2 LTR MaLR -282 168 1 299 204 136 136 chr6 86236606 86236677 -96178565 + MIR SINE MIR 3 73 -189 1746 150 7 4 chr6 86236677 86236985 -96178257 - AluSx SINE Alu 0 309 1 299 204 136 136 chr6 86236985 86237074 -96178168 + MIR SINE MIR 72 164 -98 248 223 85 53 chr6 86237546 86237640 -96177602 + LTR33A LTR ERVL 420 516 -7 280 169 169 0 chr6 86237648 86237713 -96177529 + MIR SINE MIR 160 235 -27 266 321 18 18 chr6 86238702 86238811 -96176431 + MIR SINE MIR 128 236 -26 1849 156 3 14 chr6 86240020 86240308 -96174934 - AluJo SINE Alu -24 288 4 453 192 8 16 chr6 86240328 86240453 -96174789 - L1MB8 LINE L1 -6 6172 6049 702 179 11 62 chr6 86240455 86240634 -96174608 - L1M4 LINE L1 -1792 4354 4185 21 0 0 0 chr6 86240836 86240857 -96174385 + AT_rich Low_complexity Low_complexity 1 21 0 257 229 16 16 chr6 86241669 86241730 -96173512 + L2 LINE L2 3168 3228 -44 200 304 92 88 chr6 86241763 86242013 -96173229 - L2 LINE L2 -23 3249 2999 216 0 0 0 chr6 86242070 86242094 -96173148 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 457 313 56 20 chr6 86242120 86242318 -96172924 + MIR SINE MIR 48 252 -10 38 39 0 0 chr6 86242383 86242435 -96172807 + AT_rich Low_complexity Low_complexity 1 52 0 236 208 109 40 chr6 86242436 86242537 -96172705 + HAL1 LINE L1 2295 2402 -105 1474 216 77 128 chr6 86242786 86243602 -96171640 + MER20B DNA MER1_type 1 775 -8 232 297 18 90 chr6 86243624 86243735 -96171507 - L3b LINE CR1 -200 1383 1281 327 49 0 0 chr6 86243866 86243907 -96171335 + (T)n Simple_repeat Simple_repeat 1 41 0 185 222 111 37 chr6 86244508 86244562 -96170680 - L2 LINE L2 -5 3308 3251 * 691 172 0 0 chr6 86244529 86244645 -96170597 - MIR SINE MIR -24 238 123 682 244 54 49 chr6 86245884 86246089 -96169153 + MIR SINE MIR 20 225 -37 1486 286 54 37 chr6 86246174 86246709 -96168533 - MER77 LTR ERV1 -8 597 54 214 197 56 28 chr6 86246904 86246975 -96168267 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 252 289 126 0 chr6 86246978 86247137 -96168105 - L1MC4 LINE L1 -143 7899 7721 232 234 0 0 chr6 86247350 86247397 -96167845 - L2 LINE L2 -16 3256 3210 277 325 103 34 chr6 86248144 86248261 -96166981 - L2 LINE L2 -12 3260 3136 399 296 56 8 chr6 86249326 86249451 -96165791 + L2 LINE L2 3141 3271 -1 221 333 108 8 chr6 86249439 86249559 -96165683 + L3 LINE CR1 569 700 -877 * 244 238 12 25 chr6 86249582 86249662 -96165580 - MER116 DNA Mariner -1 79 1 2272 73 0 0 chr6 86249751 86250025 -96165217 + AluSc SINE Alu 1 274 -35 219 36 0 0 chr6 86250030 86250058 -96165184 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 573 302 156 36 chr6 86250114 86250422 -96164820 + L3 LINE CR1 1228 1572 -5 216 242 179 32 chr6 86250873 86250968 -96164274 - L2 LINE L2 -4 3268 3160 2086 148 5 30 chr6 86251006 86251379 -96163863 - THE1B LTR MaLR 0 364 1 377 337 118 0 chr6 86251402 86251571 -96163671 - MIR SINE MIR -72 190 2 555 311 105 18 chr6 86251695 86251914 -96163328 - MIR SINE MIR -6 256 19 3685 167 69 22 chr6 86251922 86252691 -96162551 - L1MB7 LINE L1 -41 6143 5138 2082 128 13 3 chr6 86252691 86252989 -96162253 - AluSx SINE Alu -11 301 1 3685 167 69 22 chr6 86252989 86253072 -96162170 - L1MB7 LINE L1 -1046 5138 5060 21 36 0 0 chr6 86253376 86253404 -96161838 + AT_rich Low_complexity Low_complexity 1 28 0 422 323 43 12 chr6 86253795 86253956 -96161286 + MER91B DNA MER1_type 20 185 -5 492 276 156 40 chr6 86254268 86254718 -96160524 + L1ME LINE L1 5289 5790 -331 22 35 0 0 chr6 86254722 86254751 -96160491 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr6 86254772 86254795 -96160447 + (CA)n Simple_repeat Simple_repeat 2 24 0 306 0 0 0 chr6 86255811 86255845 -96159397 + (T)n Simple_repeat Simple_repeat 1 34 0 474 270 108 7 chr6 86257919 86258067 -96157175 + MIR SINE MIR 88 250 -12 21 0 0 0 chr6 86258085 86258106 -96157136 + AT_rich Low_complexity Low_complexity 1 21 0 2247 139 8 35 chr6 86260184 86260558 -96154684 + THE1B LTR MaLR 1 364 0 11148 93 12 22 chr6 86260558 86262155 -96153087 + THE1B-int LTR MaLR 1 1580 0 2253 127 16 32 chr6 86262155 86262525 -96152717 + THE1B LTR MaLR 1 364 0 367 256 44 11 chr6 86264384 86264474 -96150768 + L2 LINE L2 3221 3313 0 198 0 0 0 chr6 86265928 86265950 -96149292 + (A)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr6 86266382 86266405 -96148837 + AT_rich Low_complexity Low_complexity 1 23 0 197 314 81 0 chr6 86267151 86267237 -96148005 + MIR SINE MIR 59 151 -111 582 245 162 9 chr6 86267252 86267468 -96147774 + L2 LINE L2 3063 3311 -2 193 28 0 56 chr6 86267959 86267995 -96147247 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 881 195 6 24 chr6 86267998 86268189 -96147053 + AluJb SINE Alu 124 311 0 2399 72 7 0 chr6 86269112 86269417 -96145825 - AluY SINE Alu -4 307 1 476 319 111 32 chr6 86270995 86271337 -96143905 + L1ME4a LINE L1 5534 5902 -219 419 286 53 26 chr6 86272199 86272388 -96142854 + MIR SINE MIR 2 195 -67 304 267 19 29 chr6 86273217 86273322 -96141920 + L1M4 LINE L1 2213 2316 -3830 471 262 67 0 chr6 86273322 86273471 -96141771 + L1ME3A LINE L1 5727 5885 -285 22 35 0 0 chr6 86273659 86273688 -96141554 + AT_rich Low_complexity Low_complexity 1 29 0 389 228 161 52 chr6 86273832 86274025 -96141217 + L1MEd LINE L1 1311 1524 -4892 185 65 32 0 chr6 86274051 86274082 -96141160 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 347 192 153 11 chr6 86274085 86274337 -96140905 + L1MEd LINE L1 1429 1931 -856 23 54 0 0 chr6 86274423 86274460 -96140782 + AT_rich Low_complexity Low_complexity 1 37 0 1207 183 104 3 chr6 86274519 86274874 -96140368 - Charlie5 DNA MER1_type 0 2624 2234 365 192 183 0 chr6 86274871 86274975 -96140267 - Charlie5 DNA MER1_type -2485 127 5 * 2412 86 0 0 chr6 86275368 86275660 -96139582 - AluSx SINE Alu -16 296 5 1438 126 129 65 chr6 86278014 86278147 -96137095 + AluSx SINE Alu 1 124 -188 2028 132 0 0 chr6 86278147 86278460 -96136782 + AluY SINE Alu 1 313 0 1438 126 129 65 chr6 86278460 86278603 -96136639 + AluSx SINE Alu 124 296 -16 205 299 130 0 chr6 86278749 86278826 -96136416 + MIR3 SINE MIR 102 188 -20 610 215 20 100 chr6 86278986 86279186 -96136056 - MIR SINE MIR -73 189 6 255 265 103 56 chr6 86279556 86279699 -96135543 - MIR SINE MIR -65 143 44 22 35 0 0 chr6 86280224 86280253 -96134989 + AT_rich Low_complexity Low_complexity 1 29 0 406 318 15 15 chr6 86280996 86281128 -96134114 + MIR SINE MIR 5 136 -126 700 278 37 5 chr6 86281153 86281369 -96133873 + MIR SINE MIR 15 237 -25 196 322 0 0 chr6 86282434 86282493 -96132749 - MIR SINE MIR 0 262 204 277 299 145 0 chr6 86283279 86283396 -96131846 + MIR SINE MIR 20 153 -109 286 229 14 14 chr6 86283406 86283476 -96131766 + MLT1L LTR MaLR 4 73 -542 198 71 0 0 chr6 86283490 86283518 -96131724 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 259 246 161 50 chr6 86283664 86283924 -96131318 + MLT1J LTR MaLR 223 511 0 928 134 0 0 chr6 86284864 86284991 -96130251 + AluJb SINE Alu 1 127 -185 324 221 35 44 chr6 86285216 86285329 -96129913 + MLT1I LTR MaLR 298 409 0 618 201 60 34 chr6 86286707 86286856 -96128386 + MLT1I LTR MaLR 9 161 -248 2140 152 14 7 chr6 86286860 86287274 -96127968 - L1MB2 LINE L1 0 6171 5755 2721 175 134 28 chr6 86287374 86287828 -96127414 + L1MB7 LINE L1 5054 5458 -726 2359 51 0 7 chr6 86287828 86288121 -96127121 + AluY SINE Alu 1 291 -20 2721 175 134 28 chr6 86288121 86288691 -96126551 + L1MB7 LINE L1 5458 6182 -2 347 331 57 27 chr6 86288693 86289097 -96126145 - L1MB2 LINE L1 -569 5552 5098 265 324 167 10 chr6 86291311 86291515 -96123727 + MIR SINE MIR 13 248 -14 940 256 32 26 chr6 86293766 86294106 -96121136 + L1ME1 LINE L1 3579 3920 -2226 659 228 54 0 chr6 86294107 86294291 -96120951 + L1ME1 LINE L1 5753 5946 -220 388 218 15 157 chr6 86294470 86294732 -96120510 - L1MC4 LINE L1 -926 7062 6811 28 61 0 0 chr6 86294793 86294842 -96120400 + AT_rich Low_complexity Low_complexity 1 49 0 188 67 33 0 chr6 86295889 86295919 -96119323 + (GA)n Simple_repeat Simple_repeat 2 32 0 243 175 44 191 chr6 86295951 86296134 -96119108 - MER112 DNA MER1_type -104 156 1 891 176 33 0 chr6 86296189 86296342 -96118900 - AluJo SINE Alu -19 293 136 246 32 0 0 chr6 86296615 86296646 -96118596 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 156 0 0 chr6 86296646 86296691 -96118551 + GA-rich Low_complexity Low_complexity 1 45 0 5413 78 8 0 chr6 86297046 86297790 -96117452 - L1P LINE L1 -5374 772 23 284 216 27 0 chr6 86297790 86297864 -96117378 - MER41A LTR ERV1 -339 215 140 824 86 0 8 chr6 86297932 86298060 -96117182 - MER41B LTR ERV1 -508 127 1 7151 100 25 7 chr6 86298060 86299156 -96116086 - MER41B-int LTR ERV1 0 5946 4831 5391 102 7 33 chr6 86299177 86300047 -96115195 - L1PA10 LINE L1 0 6168 5322 * 6758 203 31 18 chr6 86300041 86301430 -96113812 - L1P3 LINE L1 -3752 2709 1204 188 86 29 0 chr6 86301430 86301465 -96113777 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6758 203 31 18 chr6 86301465 86302680 -96112562 - L1P3 LINE L1 -5257 1204 7 2498 136 38 12 chr6 86302680 86303106 -96112136 - MER41B-int LTR ERV1 -3343 2603 2167 * 7963 135 25 10 chr6 86303102 86304916 -96110326 - MER41B-int LTR ERV1 -3929 2017 1 1033 103 0 0 chr6 86304916 86305071 -96110171 - MER41B LTR ERV1 0 635 481 712 218 16 16 chr6 86305138 86305381 -96109861 + L1MB7 LINE L1 2798 3040 -3106 786 160 0 38 chr6 86305535 86305666 -96109576 - AluJo SINE Alu -176 126 1 2424 191 60 43 chr6 86306445 86307143 -96108099 - MER106B DNA MER1_type -348 711 2 305 356 11 0 chr6 86307818 86307905 -96107337 - MIR SINE MIR -83 125 38 388 345 125 24 chr6 86308562 86309153 -96106089 - L2 LINE L2 0 3272 2635 2943 189 35 30 chr6 86309286 86310107 -96105135 + MER106B DNA MER1_type 61 885 -174 24717 48 1 2 chr6 86310112 86314037 -96101205 - L1PA7 LINE L1 -4 6150 2233 2798 206 46 20 chr6 86314309 86317080 -96098162 + L1MB7 LINE L1 3249 6165 -19 990 160 129 44 chr6 86317135 86317360 -96097882 + MLT1D LTR MaLR 262 505 0 372 230 0 0 chr6 86317377 86317451 -96097791 - L2 LINE L2 -1001 2313 2240 432 269 69 15 chr6 86317536 86317666 -96097576 - MIR SINE MIR -96 166 30 737 298 75 85 chr6 86317742 86318433 -96096809 - L2 LINE L2 -1396 1918 1235 209 345 60 0 chr6 86319506 86319590 -96095652 - L2 LINE L2 -17 3296 3208 2062 141 3 7 chr6 86319824 86320123 -96095119 + AluSx SINE Alu 1 298 -14 199 235 139 35 chr6 86320622 86320737 -96094505 - MIR SINE MIR -34 228 102 1491 210 16 38 chr6 86321281 86321653 -96093589 + MLT1A2 LTR MaLR 4 367 -7 336 269 223 0 chr6 86323264 86323394 -96091848 - MIR3 SINE MIR -23 185 27 207 0 0 0 chr6 86323501 86323524 -96091718 + (CAT)n Simple_repeat Simple_repeat 1 23 0 913 291 5 0 chr6 86324386 86324606 -96090636 - MIR SINE MIR -27 235 15 227 246 138 0 chr6 86325079 86325144 -96090098 - L2 LINE L2 0 3313 3240 487 144 79 173 chr6 86325945 86326084 -96089158 - L2 LINE L2 -1 3312 3187 1608 195 7 7 chr6 86326913 86327190 -96088052 + AluJo SINE Alu 1 277 -35 1174 85 11 6 chr6 86327198 86327375 -96087867 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 300 200 0 0 chr6 86327376 86327441 -96087801 + GA-rich Low_complexity Low_complexity 4 68 0 1837 165 12 0 chr6 86327768 86328096 -96087146 + MER2 DNA MER2_type 1 332 -13 737 251 44 25 chr6 86328245 86328448 -96086794 + MER58A DNA MER1_type 2 208 -16 200 359 78 28 chr6 86328464 86328606 -96086636 + L3 LINE CR1 307 455 -1122 181 256 0 0 chr6 86328603 86328642 -96086600 - MIR SINE MIR -6 256 218 * 426 173 18 73 chr6 86328779 86328889 -96086353 - MER31B LTR ERV1 -136 330 227 616 345 123 35 chr6 86328915 86329809 -96085433 - L2 LINE L2 -250 3022 2049 879 308 128 37 chr6 86329813 86330324 -96084918 + L3 LINE CR1 460 1017 -560 830 194 17 29 chr6 86330324 86330499 -96084743 + MER5B DNA MER1_type 1 173 -5 536 177 32 57 chr6 86330518 86330676 -96084566 - MER31A LTR ERV1 0 485 332 939 194 115 32 chr6 86330798 86331051 -96084191 - MER31B LTR ERV1 -91 375 102 1559 206 3 10 chr6 86331054 86331350 -96083892 - AluJb SINE Alu -5 307 14 1158 204 164 53 chr6 86331473 86331998 -96083244 - MER34C LTR ERV1 -2 583 1 259 268 52 72 chr6 86332014 86332111 -96083131 - MER5A DNA MER1_type -18 171 77 429 277 44 6 chr6 86332319 86332478 -96082764 + Charlie8 DNA MER1_type 83 247 -2170 620 333 84 7 chr6 86332568 86332865 -96082377 + L3 LINE CR1 1134 1453 -124 419 177 0 0 chr6 86333017 86333079 -96082163 - AluJ/FLAM SINE Alu -250 62 1 403 258 26 39 chr6 86333387 86333579 -96081663 + MIR SINE MIR 4 230 -32 257 263 20 20 chr6 86333582 86333681 -96081561 - L1ME LINE L1 -305 5816 5718 485 62 0 0 chr6 86333885 86333950 -96081292 + Alu SINE Alu 231 295 -14 39585 64 7 2 chr6 86333951 86340102 -96075140 + L1PA5 LINE L1 1 6177 0 2218 106 27 0 chr6 86340204 86340497 -96074745 - AluSq SINE Alu -12 301 1 1393 239 17 10 chr6 86340574 86340980 -96074262 + L1ME1 LINE L1 2647 3055 -3091 440 170 71 9 chr6 86340976 86341088 -96074154 + L1ME1 LINE L1 4658 4776 -1370 * 284 179 0 0 chr6 86341116 86341172 -96074070 + L1ME1 LINE L1 5128 5183 -963 1287 180 48 52 chr6 86341172 86341767 -96073475 - LTR48B LTR ERV1 0 644 1 2180 175 31 18 chr6 86341868 86342614 -96072628 - LTR48B-int LTR ERV1 -164 6167 5367 8503 180 38 12 chr6 86342617 86345371 -96069871 - L1PA16 LINE L1 -22 6144 3325 5334 172 66 77 chr6 86345371 86345842 -96069400 - LTR48B-int LTR ERV1 -948 5383 4908 2554 91 8 56 chr6 86345842 86345926 -96069316 - THE1C LTR MaLR 0 375 288 1888 126 7 4 chr6 86345926 86346196 -96069046 - AluSx SINE Alu -13 299 29 2554 91 8 56 chr6 86346196 86346505 -96068737 - THE1C LTR MaLR -87 288 1 5334 172 66 77 chr6 86346505 86347077 -96068165 - LTR48B-int LTR ERV1 -1423 4908 4331 2319 68 3 3 chr6 86347077 86347372 -96067870 + AluY SINE Alu 1 295 -16 5334 172 66 77 chr6 86347372 86348027 -96067215 - LTR48B-int LTR ERV1 -2000 4331 3703 357 225 71 48 chr6 86348047 86348298 -96066944 - LTR48B-int LTR ERV1 -1929 3672 2712 2463 208 65 25 chr6 86348298 86349077 -96066165 + L1ME1 LINE L1 5172 5975 -191 1668 213 43 55 chr6 86349117 86349647 -96065595 - MER34 LTR ERV1 -18 524 1 446 234 73 0 chr6 86349650 86349774 -96065468 + L1MA10 LINE L1 6175 6307 -27 1135 153 68 75 chr6 86349785 86350106 -96065136 + LTR56 LTR ERV1 11 329 -116 1641 220 6 8 chr6 86350339 86350693 -96064549 - MER4D LTR ERV1 0 903 551 801 184 19 5 chr6 86350694 86350868 -96064374 - MER4E LTR ERV1 -587 285 1 650 100 90 0 chr6 86351245 86351345 -96063897 - HY1 scRNA scRNA -3 109 1 606 205 22 76 chr6 86352082 86352267 -96062975 + MER5B DNA MER1_type 4 178 0 363 250 97 16 chr6 86352957 86353081 -96062161 + MIR SINE MIR 111 244 -18 1808 124 4 8 chr6 86353100 86353357 -96061885 - AluSx SINE Alu -8 304 49 2084 155 0 0 chr6 86356311 86356601 -96058641 - AluSx SINE Alu -22 290 1 2242 135 66 0 chr6 86356872 86357205 -96058037 - LTR18A LTR ERVL -2 355 1 20454 153 12 1 chr6 86357208 86360497 -96054745 - HERVL18 LTR ERVL -2 6045 2720 1145 148 64 2 chr6 86360496 86360756 -96054486 - HERVL18 LTR ERVL -3595 2452 2119 * 8150 177 12 7 chr6 86360755 86362479 -96052763 - HERVL18 LTR ERVL -4237 1810 9 2136 150 66 3 chr6 86362493 86362827 -96052415 - LTR18A LTR ERVL 0 357 3 2347 109 6 0 chr6 86363433 86363744 -96051498 - AluSq SINE Alu 0 313 1 54 40 0 0 chr6 86363752 86363827 -96051415 + AT_rich Low_complexity Low_complexity 1 75 0 293 306 48 48 chr6 86364730 86364916 -96050326 + LTR16A LTR ERVL 260 445 -5 229 295 11 11 chr6 86365195 86365290 -96049952 - L1MEc LINE L1 -2721 3494 3400 396 261 113 86 chr6 86365371 86365662 -96049580 - L1MEc LINE L1 -2878 3337 3039 13145 118 39 8 chr6 86366043 86366729 -96048513 - Tigger1 DNA MER2_type -149 2269 1606 1626 203 38 0 chr6 86366729 86367020 -96048222 - AluSx SINE Alu -10 302 1 13145 118 39 8 chr6 86367020 86368470 -96046772 - Tigger1 DNA MER2_type -812 1606 66 28928 48 3 2 chr6 86368917 86375053 -96040189 - L1PA4 LINE L1 -3 6152 4 23 0 0 0 chr6 86375205 86375228 -96040014 + AT_rich Low_complexity Low_complexity 1 23 0 472 344 54 4 chr6 86376695 86376936 -96038306 - L1MEc LINE L1 -3983 2413 2161 2266 105 3 3 chr6 86376973 86377279 -96037963 - AluSq SINE Alu -7 306 1 261 354 28 0 chr6 86377383 86377595 -96037647 - HAL1 LINE L1 -1032 1475 1258 2029 129 11 0 chr6 86377976 86378254 -96036988 - AluSx SINE Alu -31 281 1 204 232 0 14 chr6 86379206 86379275 -96035967 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 435 127 13 25 chr6 86379277 86379356 -96035886 + MER53 DNA DNA 1 78 -111 3126 208 111 34 chr6 86379538 86380977 -96034265 - L1ME1 LINE L1 -53 6128 4557 483 308 61 12 chr6 86382264 86382582 -96032660 + MLT1J LTR MaLR 20 442 -69 299 200 43 0 chr6 86382581 86382651 -96032591 - LTR49 LTR ERV1 -72 523 451 * 257 303 27 141 chr6 86382963 86383148 -96032094 + MIR SINE MIR 38 207 -7 355 266 173 34 chr6 86383425 86383662 -96031580 - MER102a DNA MER1_type -29 301 32 28 0 0 0 chr6 86385543 86385571 -96029671 + AT_rich Low_complexity Low_complexity 1 28 0 2214 118 3 0 chr6 86385775 86386080 -96029162 - AluSx SINE Alu -6 306 1 385 252 126 39 chr6 86386509 86386715 -96028527 + HAL1 LINE L1 1697 1920 -587 1385 170 57 4 chr6 86386841 86387106 -96028136 + MLT1A1 LTR MaLR 87 365 0 402 115 0 92 chr6 86387310 86387397 -96027845 + L1MC1 LINE L1 6255 6333 0 229 229 169 66 chr6 86387547 86387730 -96027512 + HAL1 LINE L1 2306 2507 0 952 143 26 0 chr6 86387909 86388063 -96027179 + MLT1A2 LTR MaLR 1 158 -216 685 187 15 30 chr6 86388345 86388497 -96026745 + MLT1B LTR MaLR 225 374 0 929 190 82 0 chr6 86388498 86388682 -96026560 + MER58A DNA MER1_type 20 218 -6 305 307 83 52 chr6 86389009 86389452 -96025790 + L1 LINE L1 2844 3300 -2846 29 0 0 0 chr6 86390315 86390344 -96024898 + AT_rich Low_complexity Low_complexity 1 29 0 2057 170 8 8 chr6 86390640 86390998 -96024244 + MLT2D LTR ERVL 1 358 -56 441 0 0 0 chr6 86390999 86391048 -96024194 + (TC)n Simple_repeat Simple_repeat 2 50 0 419 0 20 0 chr6 86391047 86391098 -96024144 + (TA)n Simple_repeat Simple_repeat 1 52 0 * 391 314 59 9 chr6 86391117 86391337 -96023905 + L1 LINE L1 3623 3853 -2293 226 174 22 0 chr6 86391576 86391622 -96023620 + MLT2D LTR ERVL 417 463 -1 2114 147 5 41 chr6 86391622 86392011 -96023231 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr6 86392310 86392348 -96022894 + AT_rich Low_complexity Low_complexity 1 38 0 2620 110 10 12 chr6 86392358 86392767 -96022475 - L1PA16 LINE L1 0 6166 5759 1339 198 9 37 chr6 86392785 86393133 -96022109 + L1 LINE L1 4364 4701 -1445 259 271 83 23 chr6 86393128 86393261 -96021981 - L1ME4a LINE L1 -16 6105 5965 * 804 200 87 47 chr6 86393912 86394212 -96021030 - LTR37A LTR ERV1 -69 357 46 1719 196 81 49 chr6 86394396 86394841 -96020401 + MLT1D LTR MaLR 3 461 -44 955 153 0 140 chr6 86394837 86395073 -96020169 - MLT1D LTR MaLR -302 203 1 * 869 286 40 4 chr6 86395616 86395868 -96019374 + MIR SINE MIR 2 262 0 35670 80 4 10 chr6 86396457 86402212 -96013030 + L1PA6 LINE L1 434 6152 -2 543 217 16 60 chr6 86405571 86405755 -96009487 - MER69A DNA AcHobo -1 176 1 286 316 70 19 chr6 86406500 86406658 -96008584 + L2 LINE L2 2596 2761 -553 22 0 0 0 chr6 86407599 86407621 -96007621 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chr6 86407971 86408021 -96007221 + AT_rich Low_complexity Low_complexity 1 50 0 12417 139 24 12 chr6 86408202 86410219 -96005023 - Tigger2 DNA MER2_type -2 2716 677 7480 54 1 0 chr6 86410219 86411932 -96003310 - L1PA5 LINE L1 0 6154 4441 5589 45 10 1 chr6 86411932 86412638 -96002604 + L1PA5 LINE L1 3750 4461 -1685 * 40495 72 6 2 chr6 86412636 86418299 -95996943 - L1P2 LINE L1 -466 5688 1 3782 163 27 1 chr6 86418299 86418968 -95996274 - Tigger2 DNA MER2_type -2030 688 3 9245 120 34 1 chr6 86419539 86420936 -95994306 + Tigger1 DNA MER2_type 973 2415 -3 23 0 0 0 chr6 86421227 86421250 -95993992 + AT_rich Low_complexity Low_complexity 1 23 0 252 323 86 89 chr6 86421986 86422323 -95992919 - L2 LINE L2 0 3272 2937 198 0 0 0 chr6 86422450 86422472 -95992770 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 519 282 71 47 chr6 86422534 86422704 -95992538 - MER5A DNA MER1_type 0 189 16 213 39 0 0 chr6 86423768 86423794 -95991448 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr6 86424138 86424165 -95991077 + AT_rich Low_complexity Low_complexity 1 27 0 234 281 89 20 chr6 86424803 86424949 -95990293 - MER103 DNA DNA -2 164 9 182 264 57 0 chr6 86425825 86425878 -95989364 + L2 LINE L2 3161 3216 -97 281 224 0 0 chr6 86426458 86426516 -95988726 + L2 LINE L2 3213 3270 -2 24 32 0 0 chr6 86426838 86426869 -95988373 + AT_rich Low_complexity Low_complexity 1 31 0 212 343 15 0 chr6 86426907 86426974 -95988268 - MIR SINE MIR -83 125 58 23 0 0 0 chr6 86427991 86428014 -95987228 + AT_rich Low_complexity Low_complexity 1 23 0 1565 108 0 0 chr6 86428516 86428719 -95986523 - AluSg/x SINE Alu -13 297 95 483 81 0 0 chr6 86428719 86428781 -95986461 - Alu SINE Alu -248 62 1 3052 151 104 38 chr6 86428937 86429619 -95985623 + LTR8A LTR ERV1 1 727 0 2071 125 9 108 chr6 86429858 86430291 -95984951 - MLT1B LTR MaLR 0 390 1 759 333 27 8 chr6 86430600 86430861 -95984381 - HERV16 LTR ERVL -1915 3081 2816 1258 312 75 12 chr6 86430900 86431499 -95983743 - HERV16 LTR ERVL -4358 638 2 443 302 65 0 chr6 86431512 86431681 -95983561 - LTR16A LTR ERVL -21 429 250 2540 222 26 4 chr6 86431700 86432231 -95983011 - REP3 LTR ERV -19 543 1 327 197 0 0 chr6 86432231 86432292 -95982950 - LTR16A LTR ERVL -196 254 194 247 209 55 22 chr6 86432343 86432434 -95982808 - LTR16A1 LTR ERVL -356 101 8 931 280 153 21 chr6 86432480 86433015 -95982227 - MLT1L LTR MaLR -8 607 2 3042 170 7 6 chr6 86433845 86434386 -95980856 - MER68 LTR ERV1 -8 554 13 22 0 0 0 chr6 86435094 86435116 -95980126 + AT_rich Low_complexity Low_complexity 1 22 0 203 250 22 22 chr6 86436183 86436199 -95979043 + (TTTA)n Simple_repeat Simple_repeat 1 16 -76 2756 82 3 0 chr6 86436199 86436553 -95978689 - THE1A LTR MaLR 0 355 1 203 250 22 22 chr6 86436553 86436628 -95978614 + (TTTA)n Simple_repeat Simple_repeat 15 92 0 360 310 70 0 chr6 86437719 86437919 -95977323 - L1ME LINE L1 -370 5751 5538 282 237 59 93 chr6 86437979 86438097 -95977145 + L2 LINE L2 3191 3304 -9 357 335 79 0 chr6 86438557 86438709 -95976533 + MIR SINE MIR 77 240 -22 469 124 2 8 chr6 86438971 86439059 -95976183 - MLT1A1 LTR MaLR 0 365 294 852 61 0 0 chr6 86439059 86439173 -95976069 - L1PA2 LINE L1 -1461 4685 4572 7598 30 0 0 chr6 86439173 86440624 -95974618 + L1PA2 LINE L1 4705 6155 0 207 114 0 0 chr6 86440627 86440662 -95974580 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 1770 156 13 3 chr6 86440669 86440977 -95974265 - MLT1A1 LTR MaLR -54 311 1 194 314 145 19 chr6 86441112 86441271 -95973971 + L3 LINE CR1 297 475 -1102 1289 192 40 75 chr6 86441701 86442170 -95973072 - LTR37B LTR ERV1 -11 457 5 315 233 0 0 chr6 86442240 86442300 -95972942 + L2 LINE L2 2227 2286 -1028 1962 155 134 13 chr6 86442313 86442694 -95972548 + MSTA LTR MaLR 2 428 0 732 253 32 0 chr6 86442695 86442853 -95972389 + MIR SINE MIR 70 232 -30 1007 333 101 46 chr6 86442876 86443796 -95971446 + L2 LINE L2 2298 3270 -2 475 348 89 30 chr6 86443781 86444276 -95970966 + L3 LINE CR1 561 1084 -493 * 400 262 233 12 chr6 86444381 86444553 -95970689 - MIR SINE MIR -1 261 52 592 325 61 24 chr6 86444623 86444918 -95970324 + L3 LINE CR1 1264 1569 -8 276 244 0 13 chr6 86445024 86445102 -95970140 + MLT1I LTR MaLR 65 141 -268 321 340 141 19 chr6 86446562 86446718 -95968524 - MIR SINE MIR -44 218 44 189 0 0 0 chr6 86446831 86446852 -95968390 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2908 41 0 0 chr6 86448096 86448498 -95966744 + L1PA4 LINE L1 5769 6170 0 241 302 47 28 chr6 86448786 86448892 -95966350 - MIR3 SINE MIR -95 113 6 2043 90 40 11 chr6 86450758 86451036 -95964206 - AluSx SINE Alu -23 289 4 22 56 0 0 chr6 86451108 86451144 -95964098 + AT_rich Low_complexity Low_complexity 1 36 0 183 42 0 0 chr6 86452529 86452553 -95962689 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 232 208 83 0 chr6 86453489 86453561 -95961681 + MER52A LTR ERV1 670 747 -1008 1602 217 92 103 chr6 86453637 86454466 -95960776 + LTR28 LTR ERV1 109 1020 0 2154 184 45 19 chr6 86454966 86455428 -95959814 + MLT1D LTR MaLR 32 505 0 259 220 0 20 chr6 86456227 86456277 -95958965 - MER5B DNA MER1_type -117 61 13 551 296 51 1 chr6 86456300 86456461 -95958781 - MIR SINE MIR -62 146 16 209 301 151 0 chr6 86456463 86456536 -95958706 + L2 LINE L2 3189 3272 0 23 0 0 0 chr6 86456917 86456940 -95958302 + AT_rich Low_complexity Low_complexity 1 23 0 193 326 215 12 chr6 86458484 86458656 -95956586 - MIR SINE MIR -8 254 48 1991 70 0 12 chr6 86458657 86458914 -95956328 - AluY SINE Alu -16 295 42 938 227 45 42 chr6 86459001 86459505 -95955737 + MER34B LTR ERV1 5 565 0 417 312 0 9 chr6 86459597 86459706 -95955536 + MIR SINE MIR 2 109 -153 486 262 107 20 chr6 86459756 86460000 -95955242 - L2 LINE L2 -2 3311 3047 22 0 0 0 chr6 86460673 86460695 -95954547 + AT_rich Low_complexity Low_complexity 1 22 0 201 245 20 0 chr6 86460786 86460835 -95954407 + MIR SINE MIR 61 110 -152 189 195 0 0 chr6 86461872 86461913 -95953329 + (TA)n Simple_repeat Simple_repeat 1 41 0 2233 172 65 9 chr6 86461913 86462659 -95952583 - LTR1B LTR ERV1 0 826 1 187 246 0 62 chr6 86462803 86462868 -95952374 + L2 LINE L2 3212 3272 0 229 343 66 24 chr6 86463883 86464049 -95951193 - L2 LINE L2 -1383 1931 1759 2086 116 3 0 chr6 86464749 86465041 -95950201 - AluSq SINE Alu -20 293 1 1012 221 121 3 chr6 86466434 86466724 -95948518 + MER5C DNA MER1_type 1 324 0 2044 141 6 10 chr6 86466764 86467077 -95948165 - AluSx SINE Alu 0 312 1 2227 171 44 5 chr6 86468036 86468446 -95946796 + MSTB1 LTR MaLR 5 430 -2 769 247 110 41 chr6 86468776 86468995 -95946247 - MIR SINE MIR -28 234 1 281 267 26 17 chr6 86469072 86469188 -95946054 + L1ME4a LINE L1 5521 5637 -484 392 131 85 23 chr6 86469403 86469491 -95945751 + MLT1J1 LTR MaLR 31 128 -322 365 218 42 70 chr6 86469607 86469749 -95945493 + MLT1J1 LTR MaLR 283 420 -26 358 228 49 16 chr6 86470721 86470844 -95944398 + L1ME4a LINE L1 5808 5934 -187 195 209 0 0 chr6 86470848 86470891 -95944351 - L2 LINE L2 0 3313 3271 22 35 0 0 chr6 86471011 86471040 -95944202 + AT_rich Low_complexity Low_complexity 1 29 0 198 103 0 0 chr6 86474098 86474127 -95941115 + (TG)n Simple_repeat Simple_repeat 1 29 0 849 169 45 50 chr6 86474271 86474472 -95940770 - MER3 DNA MER1_type -9 200 1 21 0 0 0 chr6 86474749 86474770 -95940472 + AT_rich Low_complexity Low_complexity 1 21 0 252 100 0 0 chr6 86474777 86474817 -95940425 + (TG)n Simple_repeat Simple_repeat 2 41 0 430 248 77 0 chr6 86474996 86475113 -95940129 - MLT1I LTR MaLR -221 188 63 2371 149 48 91 chr6 86475197 86475735 -95939507 - MLT2B2 LTR ERVL 0 515 1 460 301 29 7 chr6 86476260 86476396 -95938846 - MIR SINE MIR -92 170 32 513 336 39 27 chr6 86476435 86476691 -95938551 - MIR SINE MIR -3 259 1 417 96 36 24 chr6 86478819 86478902 -95936340 - MLT2B2 LTR ERVL 0 515 432 2241 91 14 0 chr6 86482704 86483000 -95932242 - AluSc SINE Alu -9 300 1 25 0 0 0 chr6 86483186 86483211 -95932031 + AT_rich Low_complexity Low_complexity 1 25 0 186 171 0 0 chr6 86483902 86483943 -95931299 + (ATG)n Simple_repeat Simple_repeat 2 42 0 786 248 48 26 chr6 86483951 86484012 -95931230 - MIR SINE MIR 0 262 204 1235 195 0 30 chr6 86484012 86484243 -95930999 + MER58A DNA MER1_type 1 224 0 786 248 48 26 chr6 86484243 86484411 -95930831 - MIR SINE MIR -58 204 28 1501 194 31 28 chr6 86484602 86484711 -95930531 - MLT1A1 LTR MaLR 0 365 258 2548 146 26 9 chr6 86484711 86485130 -95930112 + MSTB LTR MaLR 1 426 0 1501 194 31 28 chr6 86485130 86485380 -95929862 - MLT1A1 LTR MaLR -107 258 5 228 296 10 31 chr6 86487193 86487291 -95927951 - MLT1K LTR MaLR -481 107 12 1420 100 122 59 chr6 86488445 86488716 -95926526 + L1PA16 LINE L1 5870 6157 -9 324 272 92 26 chr6 86488740 86488935 -95926307 + Charlie2b DNA MER1_type 95 302 -2480 984 241 270 20 chr6 86488976 86489564 -95925678 + Charlie2b DNA MER1_type 593 1327 -1455 984 126 33 0 chr6 86489585 86489736 -95925506 + MER70A LTR ERVL 317 472 0 255 222 81 30 chr6 86489740 86489839 -95925403 - MLT1H LTR MaLR -46 509 406 303 307 33 19 chr6 86490017 86490173 -95925069 - MLT1H LTR MaLR -318 231 31 381 266 89 71 chr6 86490220 86490558 -95924684 - MLT1H-int LTR MaLR 0 1371 1028 2445 105 30 22 chr6 86491358 86491719 -95923523 - THE1B LTR MaLR 0 364 1 10485 92 44 1 chr6 86491719 86493228 -95922014 - THE1B-int LTR MaLR 0 1580 7 2223 124 30 39 chr6 86493228 86493592 -95921650 - THE1B LTR MaLR -3 361 1 2319 74 0 29 chr6 86493625 86493934 -95921308 + AluY SINE Alu 1 300 -11 334 282 78 3 chr6 86494272 86494413 -95920829 - MLT1H LTR MaLR -349 200 74 1456 209 163 11 chr6 86494449 86494884 -95920358 + MLT1D LTR MaLR 5 505 0 36 53 0 0 chr6 86494995 86495052 -95920190 + AT_rich Low_complexity Low_complexity 1 57 0 875 179 34 0 chr6 86495190 86495369 -95919873 + MER3 DNA MER1_type 19 203 -6 271 289 0 0 chr6 86495380 86495463 -95919779 + Charlie2 DNA MER1_type 1887 1969 -893 388 286 90 32 chr6 86495502 86495691 -95919551 - LTR33 LTR ERVL -18 503 304 741 230 80 5 chr6 86495732 86495932 -95919310 - LTR33 LTR ERVL -306 215 1 395 238 238 12 chr6 86495932 86496175 -95919067 + Charlie2 DNA MER1_type 1971 2268 -594 2362 96 0 0 chr6 86496328 86496629 -95918613 + AluSq SINE Alu 1 301 -12 698 259 67 38 chr6 86496874 86497218 -95918024 - L1M4 LINE L1 -2695 3451 3087 6965 118 44 9 chr6 86497218 86498408 -95916834 + Tigger3b DNA MER2_type 1 1231 0 698 259 67 38 chr6 86498408 86498558 -95916684 - L1M4 LINE L1 -3059 3087 2943 283 282 88 24 chr6 86498792 86498962 -95916280 - L1MEd LINE L1 -5634 485 305 35 0 0 0 chr6 86500263 86500298 -95914944 + AT_rich Low_complexity Low_complexity 1 35 0 2938 212 23 22 chr6 86501021 86501763 -95913479 - L1MB7 LINE L1 0 6886 6144 5176 173 20 30 chr6 86501809 86503029 -95912213 - L1MB7 LINE L1 -2030 4818 3611 25 31 0 0 chr6 86504250 86504282 -95910960 + AT_rich Low_complexity Low_complexity 1 32 0 2962 185 19 16 chr6 86504282 86505236 -95910006 - L1MB7 LINE L1 -3235 3613 2656 5881 173 22 9 chr6 86505239 86505599 -95909643 + L1MA4A LINE L1 4121 4475 -1671 1718 201 0 13 chr6 86505599 86505908 -95909334 + AluJo SINE Alu 1 305 -7 5881 173 22 9 chr6 86505908 86506814 -95908428 + L1MA4A LINE L1 4475 5403 -743 4879 129 32 6 chr6 86506822 86507646 -95907596 + L1MA4A LINE L1 5447 6291 -12 570 304 88 27 chr6 86507646 86508011 -95907231 + Charlie8 DNA MER1_type 64 450 -1967 351 226 54 48 chr6 86508013 86508199 -95907043 + L1 LINE L1 4275 4461 -1685 451 249 162 5 chr6 86508199 86508396 -95906846 + Charlie8 DNA MER1_type 455 682 -1735 1172 293 109 28 chr6 86508434 86509185 -95906057 + Charlie8 DNA MER1_type 1595 2406 -11 1266 165 51 0 chr6 86510664 86510900 -95904342 - MER52A LTR ERV1 0 1755 1508 3696 111 117 85 chr6 86510902 86512221 -95903021 + pTR5 LTR ERV1 742 2432 -6 3086 230 147 69 chr6 86512221 86513635 -95901607 - MER52A LTR ERV1 -231 1524 1 3090 158 26 5 chr6 86515114 86515689 -95899553 + L1MB4 LINE L1 5588 6174 -6 309 252 137 37 chr6 86515756 86516026 -95899216 + L1ME LINE L1 5527 5823 -298 191 315 142 24 chr6 86516972 86517099 -95898143 - MIR3 SINE MIR -30 178 37 245 231 31 15 chr6 86517631 86517696 -95897546 + MER5A DNA MER1_type 123 188 -1 3934 144 46 52 chr6 86518576 86519366 -95895876 - LTR1 LTR ERV1 0 785 1 1322 136 15 57 chr6 86521051 86521316 -95893926 - L1MB2 LINE L1 -7 6164 5911 234 281 89 20 chr6 86521690 86521836 -95893406 - MER103 DNA DNA -2 164 9 182 264 57 0 chr6 86522712 86522765 -95892477 + L2 LINE L2 3161 3216 -97 281 224 0 0 chr6 86523345 86523403 -95891839 + L2 LINE L2 3213 3270 -2 24 32 0 0 chr6 86523725 86523756 -95891486 + AT_rich Low_complexity Low_complexity 1 31 0 212 343 15 0 chr6 86523794 86523861 -95891381 - MIR SINE MIR -83 125 58 23 0 0 0 chr6 86524878 86524901 -95890341 + AT_rich Low_complexity Low_complexity 1 23 0 1582 108 0 0 chr6 86525403 86525606 -95889636 - AluSg/x SINE Alu -13 299 97 483 81 0 0 chr6 86525606 86525668 -95889574 - Alu SINE Alu -248 62 1 3033 154 104 38 chr6 86525824 86526506 -95888736 + LTR8A LTR ERV1 1 727 0 2071 125 9 108 chr6 86526745 86527178 -95888064 - MLT1B LTR MaLR 0 390 1 759 333 27 8 chr6 86527487 86527748 -95887494 - HERV16 LTR ERVL -1915 3081 2816 1258 312 75 12 chr6 86527787 86528386 -95886856 - HERV16 LTR ERVL -4358 638 2 443 302 65 0 chr6 86528399 86528568 -95886674 - LTR16A LTR ERVL -21 429 250 2563 220 26 4 chr6 86528587 86529118 -95886124 - REP3 LTR ERV -19 543 1 327 197 0 0 chr6 86529118 86529179 -95886063 - LTR16A LTR ERVL -196 254 194 247 209 55 22 chr6 86529230 86529321 -95885921 - LTR16A1 LTR ERVL -356 101 8 914 282 153 21 chr6 86529367 86529902 -95885340 - MLT1L LTR MaLR -8 607 2 3042 170 7 6 chr6 86530732 86531273 -95883969 - MER68 LTR ERV1 -8 554 13 22 0 0 0 chr6 86531981 86532003 -95883239 + AT_rich Low_complexity Low_complexity 1 22 0 203 250 22 22 chr6 86533070 86533086 -95882156 + (TTTA)n Simple_repeat Simple_repeat 1 16 -76 2736 85 3 0 chr6 86533086 86533440 -95881802 - THE1A LTR MaLR 0 355 1 203 250 22 22 chr6 86533440 86533515 -95881727 + (TTTA)n Simple_repeat Simple_repeat 15 92 0 360 310 70 0 chr6 86534606 86534806 -95880436 - L1ME LINE L1 -370 5751 5538 282 237 59 93 chr6 86534866 86534984 -95880258 + L2 LINE L2 3191 3304 -9 357 335 79 0 chr6 86535444 86535596 -95879646 + MIR SINE MIR 77 240 -22 456 137 2 8 chr6 86535858 86535946 -95879296 - MLT1A1 LTR MaLR 0 365 294 852 61 0 0 chr6 86535946 86536060 -95879182 - L1PA2 LINE L1 -1461 4685 4572 7550 30 2 0 chr6 86536060 86537509 -95877733 + L1PA2 LINE L1 4705 6155 0 207 114 0 0 chr6 86537512 86537547 -95877695 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 1770 156 13 3 chr6 86537554 86537862 -95877380 - MLT1A1 LTR MaLR -54 311 1 194 314 145 19 chr6 86537997 86538156 -95877086 + L3 LINE CR1 297 475 -1102 1289 192 40 75 chr6 86538586 86539055 -95876187 - LTR37B LTR ERV1 -11 457 5 315 233 0 0 chr6 86539125 86539185 -95876057 + L2 LINE L2 2227 2286 -1028 1985 158 135 8 chr6 86539198 86539577 -95875665 + MSTA LTR MaLR 2 428 0 732 253 32 0 chr6 86539578 86539736 -95875506 + MIR SINE MIR 70 232 -30 1007 333 101 46 chr6 86539759 86540679 -95874563 + L2 LINE L2 2298 3270 -2 475 348 89 30 chr6 86540664 86541159 -95874083 + L3 LINE CR1 561 1084 -493 * 400 262 233 12 chr6 86541264 86541436 -95873806 - MIR SINE MIR -1 261 52 592 325 61 24 chr6 86541506 86541801 -95873441 + L3 LINE CR1 1264 1569 -8 276 244 0 13 chr6 86541907 86541985 -95873257 + MLT1I LTR MaLR 65 141 -268 321 340 141 19 chr6 86543445 86543601 -95871641 - MIR SINE MIR -44 218 44 189 0 0 0 chr6 86543714 86543735 -95871507 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2908 41 0 0 chr6 86544979 86545380 -95869862 + L1PA4 LINE L1 5769 6169 0 241 302 47 28 chr6 86545669 86545775 -95869467 - MIR3 SINE MIR -95 113 6 2020 93 40 11 chr6 86547641 86547919 -95867323 - AluSx SINE Alu -23 289 4 22 56 0 0 chr6 86547992 86548028 -95867214 + AT_rich Low_complexity Low_complexity 1 36 0 183 42 0 0 chr6 86549413 86549437 -95865805 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 232 208 83 0 chr6 86550373 86550445 -95864797 + MER52A LTR ERV1 670 747 -1008 458 246 8 8 chr6 86550521 86550639 -95864603 + LTR1 LTR ERV1 109 226 -559 1581 227 58 67 chr6 86550676 86551346 -95863896 + LTR28 LTR ERV1 357 1020 0 2157 180 46 20 chr6 86551846 86552301 -95862941 + MLT1D LTR MaLR 32 498 -7 259 220 0 20 chr6 86553107 86553157 -95862085 - MER5B DNA MER1_type -117 61 13 551 296 51 1 chr6 86553180 86553341 -95861901 - MIR SINE MIR -62 146 16 209 301 151 0 chr6 86553343 86553416 -95861826 + L2 LINE L2 3189 3272 0 23 0 0 0 chr6 86553797 86553820 -95861422 + AT_rich Low_complexity Low_complexity 1 23 0 193 326 215 12 chr6 86555364 86555536 -95859706 - MIR SINE MIR -8 254 48 1982 74 0 12 chr6 86555537 86555794 -95859448 - AluY SINE Alu -16 295 42 938 227 45 42 chr6 86555881 86556385 -95858857 + MER34B LTR ERV1 5 565 0 417 312 0 9 chr6 86556477 86556586 -95858656 + MIR SINE MIR 2 109 -153 486 262 107 20 chr6 86556636 86556880 -95858362 - L2 LINE L2 -2 3311 3047 22 0 0 0 chr6 86557553 86557575 -95857667 + AT_rich Low_complexity Low_complexity 1 22 0 201 245 20 0 chr6 86557666 86557715 -95857527 + MIR SINE MIR 61 110 -152 189 195 0 0 chr6 86558752 86558793 -95856449 + (TA)n Simple_repeat Simple_repeat 1 41 0 2212 172 65 9 chr6 86558793 86559539 -95855703 - LTR1B LTR ERV1 0 826 1 187 246 0 62 chr6 86559673 86559738 -95855504 + L2 LINE L2 3212 3272 0 229 343 66 24 chr6 86560753 86560919 -95854323 - L2 LINE L2 -1383 1931 1759 2086 116 3 0 chr6 86561619 86561911 -95853331 - AluSq SINE Alu -20 293 1 1023 217 121 3 chr6 86563304 86563594 -95851648 + MER5C DNA MER1_type 1 324 0 2044 141 6 10 chr6 86563634 86563947 -95851295 - AluSx SINE Alu 0 312 1 2227 171 44 5 chr6 86564906 86565316 -95849926 + MSTB1 LTR MaLR 5 430 -2 769 247 110 41 chr6 86565647 86565866 -95849376 - MIR SINE MIR -28 234 1 281 267 26 17 chr6 86565943 86566059 -95849183 + L1ME4a LINE L1 5521 5637 -484 392 131 85 23 chr6 86566274 86566362 -95848880 + MLT1J1 LTR MaLR 31 128 -322 365 218 42 70 chr6 86566478 86566620 -95848622 + MLT1J1 LTR MaLR 283 420 -26 358 228 49 16 chr6 86567592 86567715 -95847527 + L1ME4a LINE L1 5808 5934 -187 195 209 0 0 chr6 86567719 86567762 -95847480 - L2 LINE L2 0 3313 3271 22 35 0 0 chr6 86567882 86567911 -95847331 + AT_rich Low_complexity Low_complexity 1 29 0 198 103 0 0 chr6 86570969 86570998 -95844244 + (TG)n Simple_repeat Simple_repeat 1 29 0 936 168 43 48 chr6 86571138 86571347 -95843895 - MER3 DNA MER1_type -1 208 1 21 0 0 0 chr6 86571624 86571645 -95843597 + AT_rich Low_complexity Low_complexity 1 21 0 252 100 0 0 chr6 86571652 86571692 -95843550 + (TG)n Simple_repeat Simple_repeat 2 41 0 430 248 77 0 chr6 86571871 86571988 -95843254 - MLT1I LTR MaLR -221 188 63 2352 151 48 91 chr6 86572072 86572610 -95842632 - MLT2B2 LTR ERVL 0 515 1 460 301 29 7 chr6 86573135 86573271 -95841971 - MIR SINE MIR -92 170 32 513 336 39 27 chr6 86573310 86573566 -95841676 - MIR SINE MIR -3 259 1 417 96 36 24 chr6 86575694 86575777 -95839465 - MLT2B2 LTR ERVL 0 515 432 2232 92 14 0 chr6 86579579 86579874 -95835368 - AluSc SINE Alu -10 299 1 25 0 0 0 chr6 86580060 86580085 -95835157 + AT_rich Low_complexity Low_complexity 1 25 0 186 171 0 0 chr6 86580776 86580817 -95834425 + (ATG)n Simple_repeat Simple_repeat 2 42 0 786 248 48 26 chr6 86580825 86580886 -95834356 - MIR SINE MIR 0 262 204 1235 195 0 30 chr6 86580886 86581117 -95834125 + MER58A DNA MER1_type 1 224 0 786 248 48 26 chr6 86581117 86581285 -95833957 - MIR SINE MIR -58 204 28 1514 192 31 28 chr6 86581476 86581585 -95833657 - MLT1A1 LTR MaLR 0 365 258 2548 146 26 9 chr6 86581585 86582004 -95833238 + MSTB LTR MaLR 1 426 0 1514 192 31 28 chr6 86582004 86582254 -95832988 - MLT1A1 LTR MaLR -107 258 5 228 296 10 31 chr6 86584067 86584165 -95831077 - MLT1K LTR MaLR -481 107 12 1398 103 122 59 chr6 86585319 86585590 -95829652 + L1PA16 LINE L1 5870 6157 -9 343 267 92 26 chr6 86585614 86585809 -95829433 + Charlie2b DNA MER1_type 95 302 -2560 984 241 270 20 chr6 86585850 86586438 -95828804 + Charlie2b DNA MER1_type 593 1327 -1455 984 126 33 0 chr6 86586459 86586610 -95828632 + MER70A LTR ERVL 317 472 0 255 222 81 30 chr6 86586614 86586713 -95828529 - MLT1H LTR MaLR -46 509 406 303 307 33 19 chr6 86586891 86587047 -95828195 - MLT1H LTR MaLR -318 231 31 381 266 89 71 chr6 86587094 86587432 -95827810 - MLT1H-int LTR MaLR 0 1371 1028 2445 105 30 22 chr6 86588232 86588593 -95826649 - THE1B LTR MaLR 0 364 1 10474 93 44 1 chr6 86588593 86590102 -95825140 - THE1B-int LTR MaLR 0 1580 7 2223 124 30 39 chr6 86590102 86590466 -95824776 - THE1B LTR MaLR -3 361 1 2342 71 0 29 chr6 86590499 86590809 -95824433 + AluY SINE Alu 1 301 -10 334 282 78 3 chr6 86591147 86591288 -95823954 - MLT1H LTR MaLR -349 200 74 1456 209 163 11 chr6 86591324 86591759 -95823483 + MLT1D LTR MaLR 5 505 0 36 53 0 0 chr6 86591870 86591927 -95823315 + AT_rich Low_complexity Low_complexity 1 57 0 875 179 34 0 chr6 86592065 86592244 -95822998 + MER3 DNA MER1_type 19 203 -6 271 289 0 0 chr6 86592255 86592338 -95822904 + Charlie2 DNA MER1_type 1887 1969 -893 388 286 90 32 chr6 86592377 86592566 -95822676 - LTR33 LTR ERVL -18 503 304 741 230 80 5 chr6 86592607 86592807 -95822435 - LTR33 LTR ERVL -306 215 1 * 933 243 177 17 chr6 86592807 86593394 -95821848 + Charlie2 DNA MER1_type 1971 2651 -211 593 247 18 0 chr6 86593401 86593567 -95821675 + L1M4 LINE L1 6 174 -6368 3204 156 18 4 chr6 86593567 86594119 -95821123 + L1MB5 LINE L1 5615 6174 0 410 229 45 0 chr6 86594119 86594271 -95820971 + Charlie2 DNA MER1_type 2644 2802 -60 261 222 42 0 chr6 86594271 86594343 -95820899 + MER116 DNA Mariner 2 76 -4 662 242 81 5 chr6 86594516 86594714 -95820528 + MIR SINE MIR 20 232 -30 1717 147 3 57 chr6 86595924 86596238 -95819004 - AluJo SINE Alu -15 297 1 1522 210 73 113 chr6 86596475 86597266 -95817976 + LTR28 LTR ERV1 2 958 -62 479 244 9 9 chr6 86597337 86597452 -95817790 + LTR28 LTR ERV1 905 1019 -1 381 251 206 49 chr6 86597463 86597710 -95817532 + L1ME4a LINE L1 5832 6117 -4 1442 214 4 14 chr6 86597733 86598009 -95817233 - AluJo SINE Alu -39 273 1 246 366 101 34 chr6 86598116 86598523 -95816719 + L2 LINE L2 2151 2584 -730 512 266 198 36 chr6 86598544 86598736 -95816506 - MIR SINE MIR -39 223 1 303 226 95 12 chr6 86598764 86598848 -95816394 - MIR SINE MIR -69 193 103 23 33 0 0 chr6 86599402 86599432 -95815810 + AT_rich Low_complexity Low_complexity 1 30 0 280 290 0 0 chr6 86599592 86599661 -95815581 + CT-rich Low_complexity Low_complexity 2 70 0 195 318 56 24 chr6 86600137 86600263 -95814979 + L2 LINE L2 2228 2357 -957 24 67 0 0 chr6 86600536 86600581 -95814661 + AT_rich Low_complexity Low_complexity 1 45 0 2235 110 3 0 chr6 86600805 86601114 -95814128 - AluY SINE Alu -1 310 1 329 301 197 0 chr6 86601235 86601418 -95813824 + L3 LINE CR1 1338 1556 -21 20422 32 11 2 chr6 86603006 86606279 -95808963 - L1PA3 LINE L1 -5 6150 2856 4565 57 0 11 chr6 86606282 86606900 -95808342 + L1P LINE L1 623 1233 -4913 1495 227 68 26 chr6 86607290 86607780 -95807462 - MER77 LTR ERV1 -5 600 46 458 255 74 50 chr6 86609372 86609670 -95805572 + L1ME4a LINE L1 5710 6014 -107 977 309 157 11 chr6 86609751 86610285 -95804957 - L3 LINE CR1 -141 1436 825 261 333 114 39 chr6 86610634 86610889 -95804353 + L2 LINE L2 2165 2438 -876 368 261 87 17 chr6 86610915 86611030 -95804212 - L2 LINE L2 0 3313 3191 221 213 0 21 chr6 86611247 86611294 -95803948 - L2 LINE L2 -5 3308 3263 189 274 20 0 chr6 86613566 86613617 -95801625 - MIR SINE MIR -55 207 156 229 247 25 25 chr6 86616225 86616306 -95798936 + LTR33A LTR ERVL 415 495 -28 387 241 120 0 chr6 86616491 86616624 -95798618 - MER103 DNA DNA -5 161 13 309 284 81 56 chr6 86617242 86617439 -95797803 + L1M4 LINE L1 2211 2412 -3734 577 152 182 0 chr6 86618194 86618293 -95796949 - FLAM_C SINE Alu -15 118 2 239 311 19 19 chr6 86618385 86618546 -95796696 + L1M4 LINE L1 2671 2831 -3315 225 208 79 50 chr6 86618929 86619030 -95796212 + LTR16C LTR ERVL 357 460 -31 293 345 21 13 chr6 86619208 86619443 -95795799 + HAL1b LINE L1 697 933 -415 251 303 72 19 chr6 86619794 86620114 -95795128 + L1MC4a LINE L1 2183 2519 -3627 329 300 46 21 chr6 86620180 86620507 -95794735 + L1MC4a LINE L1 3914 4248 -1898 292 303 109 28 chr6 86620639 86621134 -95794108 + L1MC4a LINE L1 4457 4991 -1155 242 252 149 0 chr6 86621335 86621442 -95793800 + L1MC4a LINE L1 5254 5376 -2432 919 235 64 21 chr6 86621508 86621836 -95793406 + L1MC4a LINE L1 5514 5855 -1953 1164 163 63 32 chr6 86621840 86622092 -95793150 - MLT1C LTR MaLR -2 465 206 350 141 31 0 chr6 86622099 86622163 -95793079 - MLT2C1 LTR ERVL -331 66 1 348 111 0 0 chr6 86622537 86622591 -95792651 + (CA)n Simple_repeat Simple_repeat 2 55 0 363 322 150 26 chr6 86623117 86623344 -95791898 + L2 LINE L2 2281 2535 -779 192 236 55 0 chr6 86623506 86623561 -95791681 + L2 LINE L2 3215 3272 0 3431 37 0 0 chr6 86625359 86625767 -95789475 - L1PA5 LINE L1 0 6154 5747 745 174 31 67 chr6 86626354 86626475 -95788767 - MER5A DNA MER1_type -1 188 75 2323 90 3 7 chr6 86626475 86626785 -95788457 - AluSq SINE Alu -3 310 2 745 174 31 67 chr6 86626785 86626858 -95788384 - MER5A DNA MER1_type -114 75 1 385 304 143 0 chr6 86627944 86628105 -95787137 - MIR SINE MIR -71 191 8 33 66 0 0 chr6 86628414 86628475 -95786767 + AT_rich Low_complexity Low_complexity 1 61 0 277 136 68 17 chr6 86628854 86628913 -95786329 + MLT1K LTR MaLR 515 576 -12 2146 106 0 13 chr6 86628915 86629217 -95786025 + AluSq SINE Alu 1 298 -15 224 312 121 45 chr6 86629278 86629435 -95785807 + MIR SINE MIR 68 236 -26 452 264 30 42 chr6 86629503 86629670 -95785572 - MIR SINE MIR -45 217 53 955 158 12 24 chr6 86629876 86630040 -95785202 - L1PA8A LINE L1 -10 6121 5960 422 216 207 19 chr6 86630253 86630466 -95784776 - MIR SINE MIR 0 262 10 805 92 17 0 chr6 86630573 86630692 -95784550 + AluSg/x SINE Alu 189 309 0 21 0 0 0 chr6 86631072 86631093 -95784149 + AT_rich Low_complexity Low_complexity 1 21 0 206 260 0 0 chr6 86632988 86633038 -95782204 + A-rich Low_complexity Low_complexity 5 54 0 186 43 0 0 chr6 86634494 86634517 -95780725 + (TGGA)n Simple_repeat Simple_repeat 2 24 0 913 230 50 91 chr6 86634574 86635035 -95780207 + L1MC4 LINE L1 7450 7891 -151 24 0 0 0 chr6 86635079 86635103 -95780139 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr6 86635976 86636014 -95779228 + AT_rich Low_complexity Low_complexity 1 38 0 620 279 164 31 chr6 86636117 86636500 -95778742 + MLT1J LTR MaLR 26 459 -52 237 301 151 19 chr6 86636654 86636816 -95778426 - MIR3 SINE MIR -51 157 1 1117 23 0 0 chr6 86637616 86637748 -95777494 - L1PA4 LINE L1 -3 6152 6021 24 0 0 0 chr6 86638073 86638097 -95777145 + AT_rich Low_complexity Low_complexity 1 24 0 291 298 9 9 chr6 86638133 86638247 -95776995 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 465 270 56 20 chr6 86638445 86638641 -95776601 + L1MC5 LINE L1 7723 7925 -36 1011 184 153 27 chr6 86640318 86640579 -95774663 + AluJo SINE Alu 1 294 -8 207 0 0 0 chr6 86640824 86640847 -95774395 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 281 254 88 0 chr6 86640847 86640961 -95774281 - L1ME4a LINE L1 -14 6107 5984 528 183 7 70 chr6 86641203 86641314 -95773928 + L1ME1 LINE L1 5140 5242 -904 2145 128 3 23 chr6 86641314 86641658 -95773584 + MER1B DNA MER1_type 1 337 0 528 183 7 70 chr6 86641658 86641688 -95773554 + L1ME1 LINE L1 5242 5272 -874 877 203 28 34 chr6 86641689 86641803 -95773439 + MER8 DNA MER2_type 2 116 -123 2253 107 0 0 chr6 86641803 86642103 -95773139 + AluY SINE Alu 1 300 -11 877 203 28 34 chr6 86642103 86642165 -95773077 + MER8 DNA MER2_type 116 177 -62 395 164 0 41 chr6 86642201 86642274 -95772968 - Tigger2 DNA MER2_type -2647 71 2 2333 244 39 29 chr6 86642318 86643067 -95772175 + L1ME1 LINE L1 5290 6045 -121 366 299 93 34 chr6 86643094 86643362 -95771880 - L1ME LINE L1 -482 5639 5356 1871 238 33 88 chr6 86643501 86644029 -95771213 + L1MC4 LINE L1 7181 7575 -420 2091 88 67 0 chr6 86644029 86644313 -95770929 + AluSg SINE Alu 1 303 -7 1871 238 33 88 chr6 86644313 86644712 -95770530 + L1MC4 LINE L1 7575 7995 0 240 242 49 34 chr6 86644798 86644897 -95770345 + L1MD2 LINE L1 1850 1937 -4603 29 60 0 0 chr6 86645016 86645066 -95770176 + AT_rich Low_complexity Low_complexity 1 50 0 264 277 66 51 chr6 86645294 86645431 -95769811 + L1MD2 LINE L1 4109 4247 -2293 288 342 9 0 chr6 86645479 86645593 -95769649 + L1ME4a LINE L1 5938 6052 -69 4408 16 0 2 chr6 86646032 86646539 -95768703 - L1PA3 LINE L1 -3 6152 5647 995 296 123 92 chr6 86646882 86647914 -95767328 - L3 LINE CR1 -28 1549 486 235 229 34 29 chr6 86647997 86648172 -95767070 + (TA)n Simple_repeat Simple_repeat 1 176 0 216 171 91 23 chr6 86648201 86648289 -95766953 + (TATAG)n Simple_repeat Simple_repeat 2 95 0 336 394 60 28 chr6 86648377 86648593 -95766649 - L3 LINE CR1 -1315 262 40 1900 158 0 3 chr6 86649207 86649516 -95765726 - AluSx SINE Alu 0 308 1 233 250 83 0 chr6 86649531 86649603 -95765639 + MIR3 SINE MIR 82 159 -49 193 360 149 17 chr6 86649944 86650119 -95765123 - MIR SINE MIR -12 250 53 285 319 71 9 chr6 86650519 86650655 -95764587 + L1ME LINE L1 5602 5757 -364 2043 182 33 3 chr6 86650655 86651046 -95764196 - MER57A LTR ERV1 0 403 1 285 319 71 9 chr6 86651046 86651119 -95764123 + L1ME LINE L1 5757 5824 -297 247 327 164 6 chr6 86651847 86652006 -95763236 - MIR3 SINE MIR 0 208 25 706 255 32 0 chr6 86653006 86653163 -95762079 + Charlie1 DNA MER1_type 1 162 -2599 2547 179 109 17 chr6 86653164 86653799 -95761443 + Charlie1 DNA MER1_type 2068 2760 -1 2725 125 41 20 chr6 86653889 86654328 -95760914 + LTR32 LTR ERVL 15 462 -9 2384 86 3 0 chr6 86655507 86655808 -95759434 + AluSx SINE Alu 1 302 -10 3775 190 94 63 chr6 86656087 86656742 -95758500 + L1MD2 LINE L1 4778 5412 -1341 429 103 0 0 chr6 86656742 86656810 -95758432 + L1MA9 LINE L1 6240 6307 -5 3775 190 94 63 chr6 86656810 86658082 -95757160 + L1MD2 LINE L1 5412 6743 -10 845 79 16 0 chr6 86660513 86660639 -95754603 - L1PA12 LINE L1 -732 5436 5309 5079 99 8 3 chr6 86660639 86661369 -95753873 + L1PA12 LINE L1 5434 6167 -1 193 343 50 20 chr6 86661484 86661583 -95753659 + MIR SINE MIR 89 190 -72 1026 174 124 53 chr6 86662247 86662546 -95752696 + MER33 DNA MER1_type 1 320 -4 267 311 66 41 chr6 86664096 86664292 -95750950 + L2 LINE L2 2699 2899 -415 1823 93 58 0 chr6 86665821 86666078 -95749164 + AluSc SINE Alu 35 306 -3 415 259 151 40 chr6 86666361 86666686 -95748556 + L1ME4a LINE L1 5562 5922 -199 2057 255 90 65 chr6 86666944 86667290 -95747952 + L1MC5 LINE L1 5664 6000 -1961 1086 163 25 5 chr6 86667290 86667492 -95747750 + MER3 DNA MER1_type 2 207 -2 2057 255 90 65 chr6 86667492 86669025 -95746217 + L1MC5 LINE L1 6000 7623 -338 903 150 43 0 chr6 86669039 86669179 -95746063 - FRAM SINE Alu -30 146 1 704 233 69 14 chr6 86669180 86669455 -95745787 + L1MC5 LINE L1 7622 7911 -50 441 285 134 22 chr6 86669702 86669881 -95745361 + MIR SINE MIR 63 261 -1 840 268 130 21 chr6 86670499 86670838 -95744404 - HAL1 LINE L1 -626 1881 1506 186 267 191 9 chr6 86670900 86671005 -95744237 - L2 LINE L2 0 3313 3190 248 304 105 62 chr6 86671017 86671274 -95743968 - HAL1 LINE L1 -1018 1489 1222 237 237 126 56 chr6 86671285 86671483 -95743759 - HAL1 LINE L1 -1351 1156 945 716 327 29 25 chr6 86671622 86672108 -95743134 + HERVI LTR ERV1 1448 1935 -5850 480 209 112 22 chr6 86672111 86672245 -95742997 + LTR18B LTR ERVL 354 499 -115 1729 310 12 46 chr6 86672266 86672595 -95742647 + HERVI LTR ERV1 2751 3090 -4695 2224 67 0 3 chr6 86672595 86672901 -95742341 + AluY SINE Alu 1 305 0 1729 310 12 46 chr6 86672901 86673526 -95741716 + HERVI LTR ERV1 3090 5727 -2058 402 282 8 8 chr6 86673744 86673868 -95741374 + HERVI LTR ERV1 3029 3152 -3744 1441 334 36 47 chr6 86674244 86675480 -95739762 + HERVI LTR ERV1 5290 7647 -138 3990 48 2 4 chr6 86675945 86676444 -95738798 + L1PA5 LINE L1 5649 6146 -8 1882 94 14 4 chr6 86676566 86676842 -95738400 + L1PA13 LINE L1 5866 6144 -19 201 39 0 0 chr6 86676849 86676875 -95738367 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 274 293 82 61 chr6 86677329 86677476 -95737766 - MIR3 SINE MIR -27 181 32 * 2305 289 140 56 chr6 86677462 86679200 -95736042 + L2 LINE L2 1365 3258 -55 25 31 0 0 chr6 86680607 86680639 -95734603 + AT_rich Low_complexity Low_complexity 1 32 0 183 80 0 0 chr6 86680816 86680841 -95734401 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 260 410 25 50 chr6 86680842 86681120 -95734122 - L2 LINE L2 -15 3257 2987 764 201 176 14 chr6 86681287 86681565 -95733677 + MER33 DNA MER1_type 1 323 -1 621 339 128 37 chr6 86681679 86682351 -95732891 - L2 LINE L2 -559 2755 2023 235 261 0 14 chr6 86683511 86683580 -95731662 + C-rich Low_complexity Low_complexity 3 70 0 324 0 0 0 chr6 86684425 86684461 -95730781 + (T)n Simple_repeat Simple_repeat 1 36 0 445 272 160 15 chr6 86685174 86685380 -95729862 - MIR SINE MIR -6 256 21 2325 67 0 3 chr6 86686559 86686877 -95728365 + AluY SINE Alu 1 317 0 1074 236 62 30 chr6 86687080 86687377 -95727865 + L1ME2 LINE L1 5773 6086 -78 2117 119 3 3 chr6 86687377 86687671 -95727571 + AluSx SINE Alu 1 294 -18 1074 236 62 30 chr6 86687671 86687746 -95727496 + L1ME2 LINE L1 6086 6157 -7 1095 284 73 6 chr6 86687751 86688079 -95727163 - MLT1K LTR MaLR -51 537 188 237 273 0 18 chr6 86688140 86688195 -95727047 - MLT1K LTR MaLR -503 85 32 442 236 84 93 chr6 86688618 86688676 -95726566 + LTR50 LTR ERVL 1 58 -737 2055 124 13 17 chr6 86688676 86688975 -95726267 - AluSq SINE Alu -15 298 1 442 236 84 93 chr6 86688975 86689141 -95726101 + LTR50 LTR ERVL 58 223 -572 1102 190 104 26 chr6 86689504 86689811 -95725431 - MER33 DNA MER1_type -6 318 1 276 387 27 0 chr6 86689877 86689988 -95725254 + MIR SINE MIR 30 143 -65 1377 79 0 16 chr6 86690465 86690654 -95724588 + MER107 DNA MER1_type 11 196 -1 328 239 112 37 chr6 86690704 86690797 -95724445 - MIR3 SINE MIR -54 154 47 763 215 77 20 chr6 86690797 86690992 -95724250 - MER63A DNA MER1_type 0 210 5 328 239 112 37 chr6 86690992 86691032 -95724210 - MIR3 SINE MIR -161 47 11 26 64 0 0 chr6 86691297 86691344 -95723898 + AT_rich Low_complexity Low_complexity 1 47 0 1973 86 68 7 chr6 86693106 86693386 -95721856 - AluSg SINE Alu -13 297 1 1797 161 7 17 chr6 86694284 86694575 -95720667 - AluJo SINE Alu -24 288 1 443 309 0 24 chr6 86694997 86695123 -95720119 + L2 LINE L2 3191 3313 0 1486 61 3 27 chr6 86695791 86696041 -95719201 + Tigger3(Golem) DNA MER2_type 12 2918 -111 396 164 113 37 chr6 86696081 86696216 -95719026 + HAL1b LINE L1 805 2333 -174 273 279 70 25 chr6 86696383 86696541 -95718701 + L1ME4a LINE L1 5956 6120 -1 21 0 0 0 chr6 86696587 86696608 -95718634 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr6 86697855 86697892 -95717350 + AT_rich Low_complexity Low_complexity 1 37 0 5415 123 19 38 chr6 86697904 86698214 -95717028 - MER49 LTR ERV1 -37 886 572 1871 157 3 3 chr6 86698214 86698508 -95716734 + AluSx SINE Alu 1 294 -18 5415 123 19 38 chr6 86698508 86699100 -95716142 - MER49 LTR ERV1 -351 572 1 205 244 0 0 chr6 86699136 86699177 -95716065 + MER5A DNA MER1_type 149 189 0 2310 94 16 3 chr6 86700096 86700403 -95714839 + AluSx SINE Alu 1 311 -1 528 274 83 12 chr6 86701081 86701249 -95713993 + MIR SINE MIR 18 197 -65 2004 158 0 0 chr6 86701574 86701872 -95713370 + AluSx SINE Alu 1 298 -14 2342 72 3 0 chr6 86701923 86702214 -95713028 - AluSc SINE Alu -17 292 1 351 195 163 24 chr6 86702941 86703064 -95712178 + L1ME LINE L1 5513 5652 -469 25 31 0 0 chr6 86703598 86703630 -95711612 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr6 86703653 86703694 -95711548 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr6 86703729 86703754 -95711488 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr6 86703841 86703878 -95711364 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr6 86704802 86704836 -95710406 + AT_rich Low_complexity Low_complexity 1 34 0 933 121 0 34 chr6 86704991 86705140 -95710102 + AluJo SINE Alu 1 144 -168 1215 175 25 113 chr6 86705142 86705468 -95709774 + L1MC4 LINE L1 6741 7037 -1005 254 259 47 12 chr6 86705496 86705581 -95709661 - L1MC4 LINE L1 -684 7358 7271 745 153 0 32 chr6 86705592 86705716 -95709526 + FLAM_C SINE Alu 3 122 -21 1815 227 80 42 chr6 86705750 86706376 -95708866 + L1MC4 LINE L1 7392 8041 -1 296 127 18 0 chr6 86706404 86706459 -95708783 + GA-rich Low_complexity Low_complexity 3 58 0 889 201 7 0 chr6 86706804 86706958 -95708284 + FAM SINE Alu 1 155 -30 240 222 19 0 chr6 86707110 86707164 -95708078 - MLT1L LTR MaLR -7 608 554 397 208 28 9 chr6 86707165 86707271 -95707971 - Charlie5 DNA MER1_type 0 2623 2516 2509 80 3 0 chr6 86707276 86707588 -95707654 - AluSp SINE Alu 0 313 1 45 75 0 0 chr6 86707600 86707694 -95707548 + AT_rich Low_complexity Low_complexity 1 94 0 215 214 24 0 chr6 86708619 86708661 -95706581 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 281 47 0 chr6 86708664 86708728 -95706514 + MIR SINE MIR 120 186 -76 21 36 0 0 chr6 86708739 86708767 -95706475 + AT_rich Low_complexity Low_complexity 1 28 0 1334 97 38 80 chr6 86709108 86709346 -95705896 + MER30 DNA MER1_type 3 230 0 2157 62 0 72 chr6 86709356 86709685 -95705557 - AluY SINE Alu 0 307 1 986 83 0 8 chr6 86709687 86709820 -95705422 - AluSg SINE Alu -178 132 1 416 277 68 14 chr6 86710122 86710270 -95704972 + MLT1H LTR MaLR 392 547 -2 239 301 0 36 chr6 86710291 86710374 -95704868 + MLT1H-int LTR MaLR 20 99 -1636 338 277 72 0 chr6 86710890 86710973 -95704269 - MIR SINE MIR -154 108 20 23 78 0 0 chr6 86711032 86711083 -95704159 + AT_rich Low_complexity Low_complexity 1 51 0 33 0 0 0 chr6 86711744 86711777 -95703465 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr6 86711835 86711863 -95703379 + AT_rich Low_complexity Low_complexity 1 28 0 423 278 38 0 chr6 86712010 86712143 -95703099 - MER20B DNA MER1_type -616 167 30 1281 141 92 0 chr6 86713129 86713335 -95701907 + AluJo SINE Alu 88 312 0 1590 267 99 41 chr6 86713675 86714934 -95700308 + L1ME3A LINE L1 4616 5948 -222 3784 119 158 57 chr6 86715327 86716147 -95699095 - MER4D LTR ERV1 0 903 1 198 103 0 0 chr6 86717820 86717849 -95697393 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 891 120 0 0 chr6 86717889 86718022 -95697220 - L1MA9 LINE L1 0 6312 6180 1422 163 19 0 chr6 86718316 86718573 -95696669 - L1MD3 LINE L1 -5 7990 7729 340 271 64 37 chr6 86718718 86718851 -95696391 - L1ME LINE L1 -590 5966 5823 2355 72 0 0 chr6 86718851 86719173 -95696069 - AluY SINE Alu 0 322 1 340 271 64 37 chr6 86719173 86719225 -95696017 - L1ME LINE L1 -733 5823 5774 1092 273 93 51 chr6 86719233 86720355 -95694887 - L1ME LINE L1 -828 5712 4544 967 212 133 70 chr6 86720415 86720943 -95694299 - MER34B LTR ERV1 0 565 5 645 248 106 86 chr6 86720947 86720981 -95694261 - MLT1H1 LTR MaLR -18 572 540 946 105 0 0 chr6 86720981 86721124 -95694118 + L1MB3 LINE L1 6033 6175 -8 645 248 106 86 chr6 86721124 86721561 -95693681 - MLT1H1 LTR MaLR -50 540 1 510 174 0 0 chr6 86721602 86721688 -95693554 - L1MA8 LINE L1 -199 6092 6007 21 0 0 0 chr6 86721847 86721868 -95693374 + AT_rich Low_complexity Low_complexity 1 21 0 342 243 87 0 chr6 86721927 86722030 -95693212 - MER94 DNA DNA -21 113 2 27 0 0 0 chr6 86722180 86722207 -95693035 + AT_rich Low_complexity Low_complexity 1 27 0 256 331 0 31 chr6 86722756 86722916 -95692326 - L1ME LINE L1 -4564 1976 1822 466 245 13 13 chr6 86723030 86723046 -95692196 - L1MA10 LINE L1 -2 6332 6317 1185 229 48 6 chr6 86723046 86723360 -95691882 - L1ME2 LINE L1 -9 6155 5829 1102 194 71 82 chr6 86723361 86723531 -95691711 - L1ME2 LINE L1 -1094 5052 4882 180 0 0 0 chr6 86723531 86723551 -95691691 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1102 194 71 82 chr6 86723551 86723745 -95691497 - L1ME2 LINE L1 -1264 4882 4692 31095 81 8 27 chr6 86724065 86730314 -95684928 + L1PA6 LINE L1 13 6128 -26 285 288 179 0 chr6 86731274 86731473 -95683769 + L1ME LINE L1 5452 5682 -439 398 171 24 0 chr6 86731474 86731556 -95683686 - HsTC2 DNA Tc2 0 1898 1815 22 0 0 0 chr6 86731591 86731613 -95683629 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 86731856 86731879 -95683363 + AT_rich Low_complexity Low_complexity 1 23 0 1263 126 12 106 chr6 86732357 86732460 -95682782 - MER30 DNA MER1_type 0 230 119 2236 101 3 3 chr6 86732460 86732757 -95682485 + AluSp SINE Alu 1 297 -16 1263 126 12 106 chr6 86732757 86732907 -95682335 - MER30 DNA MER1_type -111 119 1 1565 62 5 5 chr6 86733148 86733340 -95681902 + AluSp SINE Alu 106 297 -16 570 147 64 0 chr6 86733367 86733476 -95681766 - MER30B DNA MER1_type -80 110 15 224 321 172 8 chr6 86734051 86734185 -95681057 - MER5A DNA MER1_type -5 184 29 660 241 21 37 chr6 86734768 86735009 -95680233 - MER34 LTR ERV1 0 542 306 919 87 0 0 chr6 86735023 86735138 -95680104 + AluSq/x SINE Alu 1 115 -197 2268 95 7 7 chr6 86735141 86735437 -95679805 + AluSc SINE Alu 1 296 -13 924 266 23 0 chr6 86735494 86735750 -95679492 - MER34 LTR ERV1 -278 264 3 1675 162 72 45 chr6 86736071 86736404 -95678838 + MER2 DNA MER2_type 2 343 -1 22 35 0 0 chr6 86736491 86736520 -95678722 + AT_rich Low_complexity Low_complexity 1 29 0 1757 171 10 3 chr6 86736892 86737202 -95678040 - AluJb SINE Alu 0 312 1 4574 93 38 15 chr6 86737241 86737554 -95677688 + L1PA16 LINE L1 5454 5758 -408 360 0 0 0 chr6 86737554 86737594 -95677648 + (TA)n Simple_repeat Simple_repeat 2 41 0 4574 93 38 15 chr6 86737594 86737960 -95677282 + L1PA16 LINE L1 5758 6149 -17 1939 94 14 11 chr6 86738535 86738836 -95676406 - AluSc SINE Alu 0 302 1 607 361 97 24 chr6 86739393 86739886 -95675356 - L2 LINE L2 -4 3268 2756 * 636 284 22 6 chr6 86739881 86740064 -95675178 - MIR SINE MIR -59 203 18 378 184 56 32 chr6 86740185 86740310 -95674932 - Charlie8 DNA MER1_type -2224 193 66 545 327 93 73 chr6 86740312 86740917 -95674325 + L1MEd LINE L1 4 620 -5499 884 121 0 0 chr6 86741045 86741169 -95674073 + AluSp/q SINE Alu 174 297 -16 253 127 73 0 chr6 86741169 86741224 -95674018 + L1MEd LINE L1 776 834 -5285 26 0 0 0 chr6 86741262 86741288 -95673954 + AT_rich Low_complexity Low_complexity 1 26 0 692 239 46 17 chr6 86741381 86741620 -95673622 + MER34B LTR ERV1 320 565 0 489 272 67 45 chr6 86741879 86742133 -95673109 + L1ME LINE L1 4910 5175 -996 2140 117 0 13 chr6 86742133 86742431 -95672811 + AluSp SINE Alu 1 294 -19 489 272 67 45 chr6 86742431 86742660 -95672582 + L1ME LINE L1 5175 5398 -773 2225 203 45 18 chr6 86742670 86743285 -95671957 + L1MB8 LINE L1 3841 4472 -1674 1510 175 18 25 chr6 86743310 86743584 -95671658 - AluJb SINE Alu -34 278 7 883 128 0 0 chr6 86743599 86743716 -95671526 - FLAM_C SINE Alu -18 125 9 1337 206 0 51 chr6 86743722 86744077 -95671165 + L1MB8 LINE L1 4461 4797 -1349 1938 153 10 0 chr6 86744077 86744384 -95670858 + AluSx SINE Alu 1 310 -2 462 230 20 7 chr6 86744393 86744541 -95670701 + GA-rich Low_complexity Low_complexity 1 150 0 2614 196 32 14 chr6 86744541 86745520 -95669722 + L1MB8 LINE L1 4783 5778 -400 518 154 29 0 chr6 86745629 86745733 -95669509 + L1MB8 LINE L1 6071 6177 -1 2442 67 7 0 chr6 86745758 86746055 -95669187 + AluSp SINE Alu 1 299 -14 413 317 108 12 chr6 86746056 86746330 -95668912 + L1ME LINE L1 5392 5707 -455 1826 114 4 0 chr6 86746330 86746575 -95668667 - AluSq SINE Alu -14 299 54 413 317 108 12 chr6 86746575 86746644 -95668598 + L1ME LINE L1 5707 5768 -394 2534 132 64 7 chr6 86746868 86747292 -95667950 + MER83 LTR ERV1 1 448 0 1860 137 0 27 chr6 86748152 86748451 -95666791 - AluJb SINE Alu -19 293 3 25 0 0 0 chr6 86748778 86748803 -95666439 + AT_rich Low_complexity Low_complexity 1 25 0 444 317 81 65 chr6 86749077 86749323 -95665919 - L2 LINE L2 0 3272 3023 22 0 0 0 chr6 86750135 86750157 -95665085 + AT_rich Low_complexity Low_complexity 1 22 0 2271 121 0 0 chr6 86750757 86751062 -95664180 - AluSx SINE Alu -7 305 1 180 285 80 73 chr6 86751101 86751252 -95663990 + L2 LINE L2 2262 2413 -901 242 277 50 40 chr6 86751367 86751468 -95663774 + MIR SINE MIR 154 255 -7 237 195 11 115 chr6 86751620 86751707 -95663535 + MLT1G1-int LTR MaLR 1109 1186 -185 753 245 91 51 chr6 86751901 86752272 -95662970 + MLT1G1 LTR MaLR 16 352 -203 26 30 0 0 chr6 86752950 86752983 -95662259 + AT_rich Low_complexity Low_complexity 1 33 0 1954 113 193 14 chr6 86754558 86754620 -95660622 - MSTA LTR MaLR 0 428 378 2321 96 0 3 chr6 86754620 86754922 -95660320 + AluSx SINE Alu 1 301 -11 1954 113 193 14 chr6 86754922 86755222 -95660020 - MSTA LTR MaLR -50 378 1 239 268 89 54 chr6 86757129 86757241 -95658001 + MIR SINE MIR 17 132 -76 316 336 119 7 chr6 86757898 86758041 -95657201 + MIR3 SINE MIR 49 207 -1 303 277 106 14 chr6 86758130 86758271 -95656971 + MIR SINE MIR 106 259 -3 2265 91 0 16 chr6 86758362 86758669 -95656573 - AluSx SINE Alu -10 302 1 530 319 117 5 chr6 86758711 86758924 -95656318 + MIR SINE MIR 25 261 -1 1917 140 7 16 chr6 86758976 86759283 -95655959 + AluSg SINE Alu 2 305 -5 2122 98 20 7 chr6 86760568 86760865 -95654377 - AluSq SINE Alu -12 301 1 273 169 92 0 chr6 86761590 86761655 -95653587 + MLT1A2 LTR MaLR 4 74 -300 415 313 68 0 chr6 86762481 86762628 -95652614 + MIR SINE MIR 106 262 0 2122 98 57 3 chr6 86762779 86763076 -95652166 - AluSp SINE Alu 0 313 1 461 305 97 18 chr6 86763383 86763609 -95651633 - MIR SINE MIR 0 262 19 2255 113 10 0 chr6 86763866 86764175 -95651067 + AluSp SINE Alu 1 312 -1 444 283 77 36 chr6 86764210 86765143 -95650099 - L1MC4 LINE L1 -89 7953 7030 472 182 208 6 chr6 86765226 86765385 -95649857 - L1MC4 LINE L1 -980 7062 6872 2017 89 0 0 chr6 86765386 86765643 -95649599 + AluSg SINE Alu 1 257 -53 1702 131 16 0 chr6 86765643 86765893 -95649349 + AluSx SINE Alu 45 300 -12 355 235 138 61 chr6 86766068 86766379 -95648863 - L1MC4a LINE L1 -1673 6135 5801 269 321 8 15 chr6 86767598 86767729 -95647513 + GA-rich Low_complexity Low_complexity 5 134 0 844 118 0 44 chr6 86767888 86768024 -95647218 - FLAM_C SINE Alu -3 130 1 517 304 7 0 chr6 86768038 86768186 -95647056 - MIR SINE MIR -2 260 112 1591 189 41 67 chr6 86768189 86768667 -95646575 + MLT1A1 LTR MaLR 1 365 0 183 204 0 82 chr6 86768667 86768716 -95646526 - MIR SINE MIR -151 111 67 817 240 81 78 chr6 86768775 86769208 -95646034 + MLT1L LTR MaLR 121 554 -61 248 366 0 0 chr6 86769693 86769764 -95645478 + L2 LINE L2 3184 3254 -18 24 32 0 0 chr6 86769867 86769898 -95645344 + AT_rich Low_complexity Low_complexity 1 31 0 2078 140 14 0 chr6 86770103 86770396 -95644846 + AluSx SINE Alu 2 298 -14 227 81 40 68 chr6 86771322 86771396 -95643846 + (TA)n Simple_repeat Simple_repeat 2 73 0 26 50 0 0 chr6 86771421 86771461 -95643781 + AT_rich Low_complexity Low_complexity 1 40 0 182 88 0 29 chr6 86771494 86771528 -95643714 + (TAAAAA)n Simple_repeat Simple_repeat 1 33 0 400 277 43 11 chr6 86771579 86771673 -95643569 + L2 LINE L2 3177 3273 -40 1627 161 17 34 chr6 86771972 86772263 -95642979 + AluJb SINE Alu 5 290 -22 302 222 0 0 chr6 86772264 86772327 -95642915 - L1MC4 LINE L1 -1339 6703 6641 422 256 199 19 chr6 86772764 86772920 -95642322 - MIR SINE MIR 0 262 79 836 159 0 0 chr6 86773214 86773346 -95641896 + FLAM_C SINE Alu 1 132 -1 278 317 44 44 chr6 86773439 86773622 -95641620 + L2 LINE L2 1721 1903 -1411 185 355 0 0 chr6 86773639 86773701 -95641541 - MIR SINE MIR 0 262 201 256 265 0 15 chr6 86774560 86774628 -95640614 - MIR SINE MIR -107 155 89 318 325 84 21 chr6 86774636 86774873 -95640369 + L2 LINE L2 1931 2182 -1132 1679 191 54 56 chr6 86774972 86775454 -95639788 + Charlie4a DNA MER1_type 27 507 -1 673 184 246 0 chr6 86776047 86776226 -95639016 - MER58A DNA MER1_type 0 224 2 350 310 78 0 chr6 86780258 86780374 -95634868 + MIR SINE MIR 27 151 -57 277 333 73 16 chr6 86781675 86781798 -95633444 - L2 LINE L2 0 3272 3143 416 262 27 82 chr6 86782320 86782503 -95632739 - MIR3 SINE MIR -19 189 17 275 305 55 78 chr6 86782511 86782639 -95632603 - L2 LINE L2 0 3272 3148 277 284 116 45 chr6 86783174 86783329 -95631913 - MIR SINE MIR -66 196 31 2351 169 42 15 chr6 86783623 86784078 -95631164 - MLT1C LTR MaLR 0 467 1 2169 120 10 7 chr6 86784492 86784791 -95630451 + AluSq SINE Alu 1 300 -13 933 152 73 5 chr6 86785071 86785993 -95629249 - L1MA5A LINE L1 -3 6294 5181 1932 157 0 3 chr6 86786389 86786682 -95628560 + AluJb SINE Alu 2 293 -19 195 42 0 0 chr6 86788073 86788097 -95627145 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 414 0 0 0 chr6 86788232 86788278 -95626964 + (TG)n Simple_repeat Simple_repeat 1 46 0 404 304 65 34 chr6 86788578 86788784 -95626458 + MIR SINE MIR 38 252 -10 1621 168 17 0 chr6 86789178 86789476 -95625766 - MER2 DNA MER2_type 0 345 43 544 250 57 6 chr6 86789542 86789718 -95625524 + MER117 DNA MER1_type 13 197 0 462 331 44 7 chr6 86790190 86790374 -95624868 - MIR SINE MIR -63 145 4 202 331 81 29 chr6 86790675 86790847 -95624395 - MIR SINE MIR -31 231 51 268 322 34 42 chr6 86791665 86791783 -95623459 + MIR3 SINE MIR 8 124 -84 2162 89 27 10 chr6 86791959 86792252 -95622990 + AluSx SINE Alu 1 298 -14 398 265 94 49 chr6 86792539 86792784 -95622458 + Charlie8 DNA MER1_type 198 453 -1964 1147 200 9 0 chr6 86793071 86793286 -95621956 - MER20 DNA MER1_type 0 219 3 234 323 151 0 chr6 86793340 86793433 -95621809 - MIR3 SINE MIR -21 187 81 376 206 0 168 chr6 86793467 86793598 -95621644 + MIR SINE MIR 21 130 -78 3784 171 30 12 chr6 86793624 86794380 -95620862 - L1MB7 LINE L1 -19 6165 5396 468 60 40 20 chr6 86795337 86795437 -95619805 + (TA)n Simple_repeat Simple_repeat 2 103 0 27 0 0 0 chr6 86796488 86796515 -95618727 + AT_rich Low_complexity Low_complexity 1 27 0 275 375 40 20 chr6 86796834 86796986 -95618256 + L2 LINE L2 3104 3258 -14 288 0 0 0 chr6 86797067 86797099 -95618143 + (CA)n Simple_repeat Simple_repeat 1 32 0 1891 147 107 32 chr6 86797486 86797888 -95617354 - MSTB1 LTR MaLR 0 432 1 310 184 39 19 chr6 86797947 86798050 -95617192 + (TAAA)n Simple_repeat Simple_repeat 2 106 0 1271 141 9 44 chr6 86798942 86799169 -95616073 - MER20 DNA MER1_type 0 219 1 821 195 191 22 chr6 86799310 86799587 -95615655 + MER5C DNA MER1_type 1 324 0 205 228 0 53 chr6 86799681 86799738 -95615504 + L2 LINE L2 3219 3272 0 360 266 37 9 chr6 86801058 86801167 -95614075 - MLT1H LTR MaLR -424 125 14 230 280 54 21 chr6 86802222 86802315 -95612927 - L2 LINE L2 -218 3054 2959 209 195 0 0 chr6 86802450 86802491 -95612751 + MER5A DNA MER1_type 34 74 -115 1572 178 49 26 chr6 86802499 86802887 -95612355 - L1MB8 LINE L1 0 6178 5782 533 209 8 39 chr6 86802887 86803016 -95612226 + MER5A DNA MER1_type 63 187 -2 587 326 115 22 chr6 86803021 86803438 -95611804 - L2 LINE L2 -456 2858 2403 1464 186 73 21 chr6 86803613 86803940 -95611302 - MER2 DNA MER2_type 0 344 1 1403 64 0 12 chr6 86804694 86804867 -95610375 - AluSq SINE Alu -11 302 132 22 0 0 0 chr6 86804867 86804889 -95610353 + AT_rich Low_complexity Low_complexity 1 22 0 35836 87 7 8 chr6 86805227 86811380 -95603862 - L1PA6 LINE L1 0 6154 11 515 311 31 0 chr6 86811403 86811564 -95603678 - MIR SINE MIR -16 246 81 369 206 114 87 chr6 86811746 86811930 -95603312 - Charlie7 DNA MER1_type -490 2122 1934 351 141 0 84 chr6 86811952 86812003 -95603239 - Charlie7 DNA MER1_type -909 1703 1658 2275 103 0 0 chr6 86812003 86812303 -95602939 + AluSg SINE Alu 3 302 -8 351 141 0 84 chr6 86812303 86812322 -95602920 - Charlie7 DNA MER1_type -954 1658 1639 21 0 0 0 chr6 86812575 86812596 -95602646 + AT_rich Low_complexity Low_complexity 1 21 0 197 246 53 35 chr6 86812734 86812791 -95602451 - L2 LINE L2 0 3272 3215 229 227 93 21 chr6 86813150 86813247 -95601995 - MLT1J LTR MaLR -1 510 407 318 380 48 24 chr6 86814096 86814143 -95601099 - MIR SINE MIR -70 192 148 2024 183 12 27 chr6 86814143 86814529 -95600713 - MER57A LTR ERV1 0 403 22 2314 100 0 7 chr6 86814529 86814828 -95600414 - AluSx SINE Alu -15 297 1 2024 183 12 27 chr6 86814828 86814850 -95600392 - MER57A LTR ERV1 -381 22 1 318 380 48 24 chr6 86814850 86814968 -95600274 - MIR SINE MIR -114 148 23 204 263 30 101 chr6 86816188 86816287 -95598955 - L2 LINE L2 -2 3311 3220 30 0 0 0 chr6 86816291 86816321 -95598921 + AT_rich Low_complexity Low_complexity 1 30 0 270 309 52 10 chr6 86816338 86816435 -95598807 - L2 LINE L2 -252 3061 2961 442 283 31 67 chr6 86816491 86816531 -95598711 - L2 LINE L2 -78 3235 3195 2166 112 34 0 chr6 86816531 86816826 -95598416 - AluSq SINE Alu -8 305 1 442 283 31 67 chr6 86816826 86817008 -95598234 - L2 LINE L2 -118 3195 3021 1583 218 6 6 chr6 86817036 86817375 -95597867 - MER58B DNA MER1_type 0 341 3 385 297 39 22 chr6 86817459 86817678 -95597564 - HsTC2 DNA Tc2 -1445 453 231 292 293 55 82 chr6 86817678 86818057 -95597185 - MLT1J LTR MaLR -2 509 141 1923 98 68 0 chr6 86818266 86818550 -95596692 + AluSp SINE Alu 1 302 0 442 298 94 65 chr6 86819336 86819645 -95595597 - L1MC4a LINE L1 -1695 6113 5796 586 170 0 10 chr6 86819697 86819797 -95595445 + Tigger7 DNA MER2_type 2389 2487 0 907 100 0 0 chr6 86820374 86820494 -95594748 + FLAM_C SINE Alu 1 120 -13 260 53 26 0 chr6 86821166 86821204 -95594038 + (TATG)n Simple_repeat Simple_repeat 4 42 0 36 53 0 0 chr6 86821219 86821276 -95593966 + AT_rich Low_complexity Low_complexity 1 57 0 317 345 35 0 chr6 86821863 86821976 -95593266 + MIR SINE MIR 34 150 -112 22 35 0 0 chr6 86822050 86822079 -95593163 + AT_rich Low_complexity Low_complexity 1 29 0 1095 278 150 40 chr6 86822287 86823524 -95591718 - HAL1 LINE L1 -863 1644 272 330 26 0 0 chr6 86823683 86823722 -95591520 + (TG)n Simple_repeat Simple_repeat 2 40 0 29 37 0 19 chr6 86825189 86825218 -95590024 + AT_rich Low_complexity Low_complexity 1 30 -23 2832 143 36 0 chr6 86825218 86825720 -95589522 - L1MB2 LINE L1 0 6171 5652 29 37 0 19 chr6 86825720 86825744 -95589498 + AT_rich Low_complexity Low_complexity 30 53 0 5017 112 69 18 chr6 86825744 86826662 -95588580 - L1PA16 LINE L1 -15 6151 5175 4314 209 23 14 chr6 86826664 86828033 -95587209 - L1MB2 LINE L1 -522 5649 4266 1035 87 0 0 chr6 86828909 86829047 -95586195 + AluSg/x SINE Alu 157 294 -16 203 0 0 36 chr6 86829082 86829110 -95586132 + (CA)n Simple_repeat Simple_repeat 2 28 0 208 0 0 0 chr6 86829377 86829400 -95585842 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 269 160 0 20 chr6 86829400 86829450 -95585792 - Alu SINE Alu -19 281 233 3788 48 17 4 chr6 86829813 86830290 -95584952 + L1PA6 LINE L1 5668 6150 -4 330 147 13 160 chr6 86830420 86830542 -95584700 - MER58C DNA MER1_type -2234 186 88 2109 98 35 3 chr6 86830542 86830828 -95584414 - AluSc SINE Alu -14 295 1 330 147 13 160 chr6 86830828 86830855 -95584387 - MER58C DNA MER1_type -2332 88 59 28 61 0 0 chr6 86832735 86832784 -95582458 + AT_rich Low_complexity Low_complexity 1 49 0 1020 270 91 95 chr6 86833086 86833844 -95581398 - HAL1 LINE L1 -884 1623 869 24 53 0 0 chr6 86835864 86835902 -95579340 + AT_rich Low_complexity Low_complexity 1 38 0 416 170 0 85 chr6 86836638 86836732 -95578510 - FRAM SINE Alu -17 159 74 1410 201 0 40 chr6 86837059 86837363 -95577879 - AluJo SINE Alu -10 302 11 843 158 0 0 chr6 86837851 86837971 -95577271 + AluJ SINE Alu 1 120 -192 1113 169 11 0 chr6 86838067 86838250 -95576992 + AluJ SINE Alu 113 297 -15 276 295 18 54 chr6 86838281 86838393 -95576849 - L2 LINE L2 -494 2820 2713 192 0 75 50 chr6 86838395 86838435 -95576807 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 13755 33 0 0 chr6 86838439 86840843 -95574399 - L1PA4 LINE L1 -3 6152 3749 550 339 116 25 chr6 86841666 86842279 -95572963 + L2 LINE L2 2286 3047 -225 222 306 149 8 chr6 86842320 86842441 -95572801 - L2 LINE L2 -256 3057 2920 181 339 18 0 chr6 86842662 86842718 -95572524 + MIR SINE MIR 49 105 -157 181 362 0 0 chr6 86842732 86842801 -95572441 + MIR SINE MIR 154 222 -40 325 234 117 0 chr6 86844295 86844432 -95570810 - L1ME4a LINE L1 0 6121 5969 270 0 0 0 chr6 86846545 86846575 -95568667 + (T)n Simple_repeat Simple_repeat 1 30 0 24 53 0 0 chr6 86847416 86847454 -95567788 + AT_rich Low_complexity Low_complexity 1 38 0 658 313 80 10 chr6 86850783 86851298 -95563944 - L1ME4a LINE L1 -352 5818 5268 23 54 0 0 chr6 86851573 86851610 -95563632 + AT_rich Low_complexity Low_complexity 1 37 0 1334 166 88 0 chr6 86852206 86852502 -95562740 + MER33 DNA MER1_type 3 324 0 858 268 42 21 chr6 86852902 86853234 -95562008 - L1MA9 LINE L1 -38 6274 5936 263 103 138 0 chr6 86853240 86853298 -95561944 - L1MA9 LINE L1 -430 5861 5796 1697 206 0 10 chr6 86853631 86853941 -95561301 + AluJo SINE Alu 1 307 -5 2314 118 0 0 chr6 86853977 86854281 -95560961 + AluSx SINE Alu 1 304 -8 1943 135 9 50 chr6 86854363 86854682 -95560560 - AluSx SINE Alu -6 306 1 1843 119 104 17 chr6 86856459 86856804 -95558438 - THE1C LTR MaLR 0 375 1 285 248 18 44 chr6 86857052 86857165 -95558077 - LTR41 LTR ERVL -6 767 658 560 256 11 42 chr6 86857523 86857714 -95557528 - LTR41 LTR ERVL -588 185 1 21 0 0 0 chr6 86859160 86859181 -95556061 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr6 86859619 86859645 -95555597 + (TG)n Simple_repeat Simple_repeat 1 26 0 1808 139 14 4 chr6 86859721 86860001 -95555241 + AluJb SINE Alu 4 286 -26 26 0 0 0 chr6 86860841 86860867 -95554375 + AT_rich Low_complexity Low_complexity 1 26 0 898 183 24 20 chr6 86861697 86862086 -95553156 - MLT1D LTR MaLR -32 473 22 304 243 146 10 chr6 86863164 86863267 -95551975 - L2 LINE L2 -9 3263 3147 293 166 371 0 chr6 86863688 86863815 -95551427 + MER5A DNA MER1_type 6 188 -1 193 368 39 54 chr6 86863821 86864025 -95551217 - L2 LINE L2 -553 2761 2561 180 219 0 0 chr6 86865058 86865090 -95550152 - L2 LINE L2 -17 3255 3224 293 247 13 0 chr6 86865090 86865167 -95550075 + MER112 DNA MER1_type 2 79 -181 613 250 104 31 chr6 86865574 86865941 -95549301 + MLT1H LTR MaLR 80 579 -16 393 198 30 20 chr6 86866081 86866182 -95549060 - MLT1J LTR MaLR -5 506 405 2777 246 82 11 chr6 86866546 86867371 -95547871 + MER69 DNA AcHobo 33 916 -1610 1268 187 100 54 chr6 86867390 86867850 -95547392 + MER69 DNA AcHobo 1975 2455 -71 24 0 0 0 chr6 86869838 86869862 -95545380 + AT_rich Low_complexity Low_complexity 1 24 0 831 170 14 14 chr6 86869963 86870126 -95545116 + FRAM SINE Alu 9 171 0 1944 174 11 25 chr6 86870617 86870984 -95544258 - MLT1A1 LTR MaLR -3 362 1 2058 110 0 49 chr6 86872525 86872833 -95542409 + AluSx SINE Alu 1 293 -19 1319 159 35 0 chr6 86873014 86873240 -95542002 + MER46A DNA MER2_type 1 234 -2 1251 266 28 0 chr6 86873293 86873620 -95541622 - MER58B DNA MER1_type -5 336 1 1138 159 5 24 chr6 86874230 86874337 -95540905 + MER3 DNA MER1_type 6 109 -100 1148 187 40 4 chr6 86874337 86874562 -95540680 - MER46A DNA MER2_type -3 233 1 1138 159 5 24 chr6 86874562 86874662 -95540580 + MER3 DNA MER1_type 109 209 0 1987 97 3 117 chr6 86874870 86875221 -95540021 - AluSq SINE Alu -2 311 1 604 301 104 29 chr6 86876236 86877059 -95538183 + L1MEd LINE L1 605 1590 -900 317 246 0 0 chr6 86877277 86877342 -95537900 + L2 LINE L2 3249 3313 0 519 169 130 63 chr6 86878002 86878209 -95537033 - ORSL DNA AcHobo -1 274 54 793 281 18 18 chr6 86878484 86878701 -95536541 - MIR SINE MIR -15 247 31 2594 185 56 11 chr6 86879532 86880066 -95535176 + MER74A LTR ERVL 1 558 0 1545 205 16 29 chr6 86880135 86880510 -95534732 - MLT1A2 LTR MaLR -4 370 1 358 169 31 0 chr6 86881180 86881245 -95533997 + MIR SINE MIR 115 181 -81 369 0 0 0 chr6 86881250 86881261 -95533981 + (TG)n Simple_repeat Simple_repeat 1 52 0 369 0 0 0 chr6 86881261 86881302 -95533940 + (TG)n Simple_repeat Simple_repeat 2 42 0 357 254 0 68 chr6 86881370 86881488 -95533754 - MIR SINE MIR -91 171 62 2178 114 0 10 chr6 86881730 86882038 -95533204 + AluSx SINE Alu 1 305 -7 251 297 93 8 chr6 86882456 86882574 -95532668 + L2 LINE L2 2874 3001 -271 2339 51 41 7 chr6 86884982 86885276 -95529966 + AluY SINE Alu 1 304 -7 1158 141 159 66 chr6 86885404 86885737 -95529505 - MLT1A1 LTR MaLR -1 364 1 272 292 94 70 chr6 86885818 86885989 -95529253 - L2 LINE L2 -1 3271 3097 265 347 25 55 chr6 86886471 86886670 -95528572 + MIR SINE MIR 25 221 -41 202 319 64 11 chr6 86886886 86886980 -95528262 - MER91B DNA MER1_type -80 110 12 377 66 82 0 chr6 86887088 86887149 -95528093 + MER41B LTR ERV1 481 546 -89 594 271 68 10 chr6 86887226 86887418 -95527824 + MIR SINE MIR 59 261 -1 247 307 29 29 chr6 86887418 86887558 -95527684 + HAL1 LINE L1 1472 1611 -896 7033 57 2 2 chr6 86887559 86888534 -95526708 + L1PA7 LINE L1 5176 6150 -4 24 0 0 0 chr6 86888971 86888995 -95526247 + AT_rich Low_complexity Low_complexity 1 24 0 33 25 0 0 chr6 86889514 86889554 -95525688 + AT_rich Low_complexity Low_complexity 1 40 0 4867 156 63 4 chr6 86889554 86890674 -95524568 - L1MA4 LINE L1 -6 6294 5111 1411 76 0 0 chr6 86890671 86890869 -95524373 - L1PA15 LINE L1 -186 5979 5782 * 307 334 28 0 chr6 86890870 86891002 -95524240 - MIR SINE MIR -30 178 41 466 308 23 60 chr6 86891523 86891870 -95523372 + L1MDa LINE L1 1 334 -6206 701 190 6 19 chr6 86891891 86892049 -95523193 + MLT1A1 LTR MaLR 1 156 -209 731 203 16 0 chr6 86892049 86892177 -95523065 + FLAM_A SINE Alu 1 130 -12 762 226 37 32 chr6 86892177 86892394 -95522848 + MLT1A1 LTR MaLR 148 365 0 1059 98 11 54 chr6 86892402 86892586 -95522656 - THE1B LTR MaLR 0 364 189 1620 149 9 0 chr6 86892595 86893024 -95522218 - L1P4 LINE L1 -702 6901 6470 2416 98 7 0 chr6 86893080 86893387 -95521855 - AluSg SINE Alu -1 309 1 1370 47 0 0 chr6 86893392 86893561 -95521681 - L1PA8 LINE L1 0 6172 6004 6112 205 25 8 chr6 86893561 86895017 -95520225 - L1P4 LINE L1 -1899 5685 4205 1158 241 24 12 chr6 86895015 86895351 -95519891 - L1P4 LINE L1 -7241 340 1 * 460 198 24 40 chr6 86895365 86895491 -95519751 + L1ME1 LINE L1 5587 5710 -532 868 199 13 0 chr6 86895555 86895711 -95519531 - AluJb SINE Alu -18 294 137 1141 191 14 118 chr6 86895711 86896057 -95519185 - MLT1A1 LTR MaLR -55 310 1 689 232 18 0 chr6 86896057 86896225 -95519017 + L1ME1 LINE L1 5702 5872 -294 806 194 14 0 chr6 86896264 86896408 -95518834 + MER58B DNA MER1_type 195 340 -1 654 213 104 41 chr6 86896409 86896630 -95518612 + L1ME1 LINE L1 5867 6101 -65 261 244 49 0 chr6 86898968 86899050 -95516192 - MER97b DNA MER1_type? 0 1053 968 22 56 0 0 chr6 86899195 86899231 -95516011 + AT_rich Low_complexity Low_complexity 1 36 0 398 183 52 26 chr6 86899540 86899655 -95515587 - MER97c DNA MER1_type? -206 884 767 21 0 0 0 chr6 86899768 86899789 -95515453 + AT_rich Low_complexity Low_complexity 1 21 0 2473 214 109 11 chr6 86901501 86902245 -95512997 - MER97b DNA MER1_type? -236 817 1 447 35 0 0 chr6 86903063 86903120 -95512122 + (TG)n Simple_repeat Simple_repeat 1 57 0 517 252 0 0 chr6 86903126 86903237 -95512005 - FLAM_C SINE Alu -32 111 1 22 0 0 0 chr6 86903547 86903569 -95511673 + AT_rich Low_complexity Low_complexity 1 22 0 3080 115 27 2 chr6 86903982 86904468 -95510774 - L1PA16 LINE L1 -3 6163 5666 220 111 37 0 chr6 86904941 86904995 -95510247 + (TAA)n Simple_repeat Simple_repeat 2 57 0 189 268 54 0 chr6 86905035 86905091 -95510151 - MIR SINE MIR -68 194 136 295 243 48 87 chr6 86905549 86905652 -95509590 + L2 LINE L2 3159 3257 -15 180 111 0 0 chr6 86905654 86905681 -95509561 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 222 324 22 72 chr6 86905692 86905831 -95509411 - MIR3 SINE MIR -63 145 14 204 118 29 0 chr6 86906621 86906655 -95508587 + (CA)n Simple_repeat Simple_repeat 1 35 0 2252 142 45 45 chr6 86906898 86907287 -95507955 - MER65A LTR ERV1 0 445 54 2254 85 0 23 chr6 86907287 86907592 -95507650 - AluY SINE Alu -13 298 1 2252 142 45 45 chr6 86907592 86907647 -95507595 - MER65A LTR ERV1 -390 55 1 389 118 13 26 chr6 86907648 86907724 -95507518 + L1MB2 LINE L1 6088 6162 -9 1862 172 0 7 chr6 86907724 86908026 -95507216 - AluJo SINE Alu -12 300 1 250 194 111 65 chr6 86908052 86908160 -95507082 - L1ME LINE L1 -310 5811 5699 22 0 0 0 chr6 86908242 86908264 -95506978 + AT_rich Low_complexity Low_complexity 1 22 0 2278 113 7 0 chr6 86908575 86908885 -95506357 + AluSx SINE Alu 1 312 0 34 0 0 0 chr6 86909029 86909063 -95506179 + AT_rich Low_complexity Low_complexity 1 34 0 246 62 0 0 chr6 86909347 86909379 -95505863 + (TC)n Simple_repeat Simple_repeat 2 33 0 930 244 89 54 chr6 86911966 86912644 -95502598 + MER52A LTR ERV1 574 1459 -296 522 235 101 7 chr6 86912832 86912981 -95502261 + MER63A DNA MER1_type 48 210 0 2685 228 52 13 chr6 86913218 86913987 -95501255 + L1MB5 LINE L1 4016 4814 -1332 255 30 0 0 chr6 86913991 86914024 -95501218 - THE1B LTR MaLR -331 33 1 4274 177 44 28 chr6 86914212 86914268 -95500974 + L1MB5 LINE L1 4825 4879 -1295 2348 114 8 45 chr6 86914268 86914427 -95500815 + THE1B LTR MaLR 1 164 -200 2215 113 7 0 chr6 86914427 86914719 -95500523 - AluSx SINE Alu -18 294 1 2348 114 8 45 chr6 86914719 86914937 -95500305 + THE1B LTR MaLR 164 364 0 4274 177 44 28 chr6 86914937 86915853 -95499389 + L1MB5 LINE L1 4879 5819 -355 2392 93 45 20 chr6 86915853 86916208 -95499034 - THE1B LTR MaLR 0 364 1 4274 177 44 28 chr6 86916208 86916570 -95498672 + L1MB5 LINE L1 5819 6174 0 429 107 27 13 chr6 86916802 86916877 -95498365 + MER65A LTR ERV1 370 445 0 2671 23 3 0 chr6 86916949 86917252 -95497990 + AluY SINE Alu 1 304 -7 251 338 169 7 chr6 86917324 86917460 -95497782 + L3 LINE CR1 1331 1488 -89 841 177 112 57 chr6 86917878 86918210 -95497032 - MER39 LTR ERV1 -140 567 1 211 255 61 61 chr6 86918532 86918630 -95496612 + MIR3 SINE MIR 110 207 -1 2458 225 100 12 chr6 86918892 86919571 -95495671 - MER21B LTR ERV1 -124 739 1 271 264 152 56 chr6 86919994 86920119 -95495123 - L2 LINE L2 -8 3305 3169 369 323 47 57 chr6 86920133 86920325 -95494917 + MIR SINE MIR 29 218 -44 877 279 43 28 chr6 86920356 86920678 -95494564 + MLT2C1 LTR ERVL 17 343 -54 1708 204 0 7 chr6 86921021 86921325 -95493917 + AluJo SINE Alu 7 308 -4 2013 152 37 8 chr6 86921339 86921694 -95493548 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr6 86921811 86921834 -95493408 + AT_rich Low_complexity Low_complexity 1 23 0 287 218 26 13 chr6 86921851 86921929 -95493313 + Charlie8 DNA MER1_type 95 173 -2244 192 266 101 37 chr6 86922069 86922178 -95493064 + L2 LINE L2 700 815 -2499 433 338 79 25 chr6 86922705 86923175 -95492067 + L2 LINE L2 1599 2093 -1221 972 309 82 48 chr6 86923528 86924369 -95490873 + L2 LINE L2 2107 2976 -338 1248 166 0 9 chr6 86924617 86924846 -95490396 + L1MB3 LINE L1 5950 6176 -7 684 283 72 89 chr6 86926142 86926559 -95488683 - L2 LINE L2 0 3313 2904 227 298 91 33 chr6 86927686 86927807 -95487435 - L2 LINE L2 -18 3295 3168 2152 203 22 38 chr6 86927828 86928376 -95486866 - LTR55 LTR ERV -8 540 2 418 289 187 35 chr6 86928377 86928937 -95486305 - L2 LINE L2 -178 3135 2441 2197 175 38 17 chr6 86928976 86929393 -95485849 + MSTB LTR MaLR 1 426 0 536 277 127 9 chr6 86929470 86929683 -95485559 + MIR SINE MIR 14 251 -11 349 245 58 50 chr6 86929827 86929966 -95485276 - MER45A DNA AcHobo 0 178 39 501 144 0 0 chr6 86930732 86930822 -95484420 + (TC)n Simple_repeat Simple_repeat 2 91 0 219 217 0 0 chr6 86930811 86930871 -95484371 + CT-rich Low_complexity Low_complexity 4 63 0 * 1015 226 5 5 chr6 86930938 86931150 -95484092 + MER20 DNA MER1_type 8 219 0 557 113 0 0 chr6 86932454 86932534 -95482708 + MADE1 DNA Mariner 1 80 0 227 231 0 26 chr6 86932569 86932647 -95482595 - L1P LINE L1 -776 5392 5317 261 363 22 11 chr6 86932917 86933008 -95482234 - L2 LINE L2 -30 3242 3151 22 80 0 0 chr6 86933220 86933270 -95481972 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr6 86933457 86933492 -95481750 + AT_rich Low_complexity Low_complexity 1 35 0 335 284 0 18 chr6 86933759 86933868 -95481374 + L1ME LINE L1 5256 5362 -2446 635 261 27 0 chr6 86934042 86934228 -95481014 - MLT1F LTR MaLR -52 490 322 271 160 20 0 chr6 86934246 86934296 -95480946 - MLT1F LTR MaLR -482 60 10 250 350 41 4 chr6 86934308 86934554 -95480688 + L1ME LINE L1 5571 5825 -296 26 0 0 0 chr6 86934600 86934626 -95480616 + AT_rich Low_complexity Low_complexity 1 26 0 263 304 80 9 chr6 86936411 86936523 -95478719 + L2 LINE L2 3152 3271 -1 309 280 70 49 chr6 86936648 86936791 -95478451 - MLT1J2 LTR MaLR -31 419 274 32 57 0 0 chr6 86937628 86937681 -95477561 + AT_rich Low_complexity Low_complexity 1 53 0 726 230 17 11 chr6 86937980 86938154 -95477088 + MER5B DNA MER1_type 3 177 -1 189 139 0 93 chr6 86938452 86938495 -95476747 - MIR SINE MIR 0 262 224 2124 218 86 3 chr6 86938630 86939294 -95475948 - L1MC4 LINE L1 0 8042 7240 228 67 0 0 chr6 86939296 86939326 -95475916 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 2408 214 51 14 chr6 86939326 86939910 -95475332 - L1MC4 LINE L1 -975 7067 6462 333 294 144 22 chr6 86940322 86940502 -95474740 - L1MC4 LINE L1 -2193 5615 5414 222 213 42 0 chr6 86941732 86941793 -95473449 - MIR SINE MIR -52 156 94 203 297 31 31 chr6 86942185 86942249 -95472993 + L2 LINE L2 3242 3305 -8 545 280 140 26 chr6 86942528 86942799 -95472443 - L2 LINE L2 -2 3311 3010 310 295 93 23 chr6 86943028 86943157 -95472085 - L2 LINE L2 -14 3299 3162 1115 248 72 27 chr6 86943277 86943798 -95471444 + MER34 LTR ERV1 8 564 -21 720 203 153 12 chr6 86945836 86945999 -95469243 - MER5A DNA MER1_type 0 189 4 472 259 222 5 chr6 86946461 86946650 -95468592 - MIR SINE MIR -21 241 12 183 240 0 100 chr6 86946688 86946738 -95468504 + L2 LINE L2 3210 3254 -18 2228 100 7 3 chr6 86947020 86947319 -95467923 - AluSp SINE Alu -13 300 1 2234 76 16 38 chr6 86947922 86948236 -95467006 + AluSg SINE Alu 1 307 -3 245 170 21 0 chr6 86950205 86950252 -95464990 + LTR33A LTR ERVL 475 522 -1 1951 131 3 20 chr6 86950352 86950650 -95464592 + AluSx SINE Alu 1 293 -19 626 312 48 17 chr6 86951170 86951526 -95463716 - MLT1L LTR MaLR -130 485 119 1011 183 5 58 chr6 86951649 86951857 -95463385 + AluJo SINE Alu 1 197 -115 1396 171 37 70 chr6 87001881 87002180 -95413062 + AluJo SINE Alu 1 289 -23 764 291 85 67 chr6 87002183 87002346 -95412896 - L2 LINE L2 -569 2745 2586 2164 62 0 55 chr6 87002346 87002655 -95412587 + AluY SINE Alu 1 292 -19 764 291 85 67 chr6 87002655 87002999 -95412243 - L2 LINE L2 -728 2586 2229 579 171 79 55 chr6 87003492 87003656 -95411586 - LTR45B LTR ERV1 0 489 322 386 186 144 17 chr6 87003724 87003842 -95411400 - LTR45 LTR ERV1 -392 133 1 2991 213 40 2 chr6 87004239 87004868 -95410374 - MER82 DNA MER2_type 0 653 1 197 65 32 0 chr6 87005107 87005138 -95410104 + (TG)n Simple_repeat Simple_repeat 2 33 0 309 276 159 0 chr6 87005519 87005689 -95409553 + L1ME4a LINE L1 5753 5949 -172 1756 177 3 3 chr6 87005865 87006153 -95409089 - AluJb SINE Alu -24 288 1 21 0 0 0 chr6 87006826 87006847 -95408395 + AT_rich Low_complexity Low_complexity 1 21 0 701 90 0 141 chr6 87007831 87007987 -95407255 + AluSp/q SINE Alu 179 312 -1 23 0 0 0 chr6 87008340 87008363 -95406879 + AT_rich Low_complexity Low_complexity 1 23 0 299 251 105 94 chr6 87009731 87010189 -95405053 + L1ME4a LINE L1 5576 6038 -83 6176 189 54 17 chr6 87010537 87010754 -95404488 + L1MC1 LINE L1 3957 4164 -2169 2370 84 0 34 chr6 87010754 87011076 -95404166 + AluY SINE Alu 1 311 0 6176 189 54 17 chr6 87011076 87011917 -95403325 + L1MC1 LINE L1 4164 4972 -1361 572 101 0 0 chr6 87011917 87011996 -95403246 + MADE1 DNA Mariner 2 80 0 6176 189 54 17 chr6 87011996 87013229 -95402013 + L1MC1 LINE L1 4972 6333 0 1932 185 12 3 chr6 87013907 87014248 -95400994 - MER2 DNA MER2_type 0 344 1 3715 260 52 62 chr6 87014692 87016095 -95399147 - MER69 DNA AcHobo -1136 1390 2 493 215 142 15 chr6 87016284 87016455 -95398787 - MIR SINE MIR -11 251 59 272 211 74 183 chr6 87016485 87016751 -95398491 - MER102b DNA MER1_type -1100 328 99 1755 143 40 27 chr6 87016751 87017051 -95398191 + AluSq SINE Alu 7 310 -3 272 211 74 183 chr6 87017051 87017096 -95398146 - MER102b DNA MER1_type -1329 99 51 189 295 0 49 chr6 87017254 87017315 -95397927 + L2 LINE L2 3214 3271 -1 25 0 0 0 chr6 87017459 87017484 -95397758 + AT_rich Low_complexity Low_complexity 1 25 0 1553 162 10 62 chr6 87017544 87017852 -95397390 + AluJo SINE Alu 1 292 -20 24 67 0 0 chr6 87017861 87017906 -95397336 + AT_rich Low_complexity Low_complexity 1 45 0 6007 83 41 1 chr6 87019421 87020292 -95394950 + L1PA13 LINE L1 5258 6163 0 1199 229 60 0 chr6 87021042 87021356 -95393886 - MER63 DNA MER1_type -1 1061 729 297 264 160 0 chr6 87021560 87021666 -95393576 - L2 LINE L2 -3 3269 3147 228 305 86 29 chr6 87023482 87023587 -95391655 - L2 LINE L2 0 3272 3162 268 273 98 28 chr6 87024474 87024617 -95390625 + MLT1J2 LTR MaLR 1 153 -297 273 189 135 54 chr6 87025592 87025666 -95389576 - MLT1I LTR MaLR -229 180 101 186 71 0 0 chr6 87026648 87026676 -95388566 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 510 333 34 0 chr6 87027264 87027411 -95387831 - MER91A DNA MER1_type -43 153 2 634 225 78 0 chr6 87028001 87028143 -95387099 + MIR SINE MIR 77 229 -33 249 315 54 11 chr6 87028254 87028401 -95386841 + MIR SINE MIR 54 207 -55 22 56 0 0 chr6 87028600 87028636 -95386606 + AT_rich Low_complexity Low_complexity 1 36 0 1076 196 18 13 chr6 87028771 87028995 -95386247 + AluJo SINE Alu 84 308 -4 2294 73 0 30 chr6 87029071 87029371 -95385871 + AluSx SINE Alu 14 304 -8 396 0 0 0 chr6 87029371 87029415 -95385827 + (TA)n Simple_repeat Simple_repeat 2 45 0 1764 185 27 0 chr6 87029597 87029895 -95385347 - AluJb SINE Alu -6 306 1 403 253 106 103 chr6 87030072 87030459 -95384783 + MLT1L LTR MaLR 122 509 -2 186 107 0 0 chr6 87030560 87030588 -95384654 - MIR3 SINE MIR -6 202 175 910 191 0 0 chr6 87030833 87030985 -95384257 + AluJb SINE Alu 137 288 -24 792 195 0 0 chr6 87030985 87031149 -95384093 + GA-rich Low_complexity Low_complexity 1 164 0 339 230 23 35 chr6 87031691 87031778 -95383464 + L2 LINE L2 3223 3308 -5 1623 177 0 43 chr6 87031907 87032230 -95383012 - AluJo SINE Alu 0 323 13 13732 150 45 37 chr6 87033139 87038066 -95377176 + L1MA2 LINE L1 1363 6382 -1340 2035 147 132 5 chr6 87038066 87038446 -95376796 - MSTA LTR MaLR 0 428 1 13732 150 45 37 chr6 87038446 87039771 -95375471 + L1MA2 LINE L1 6382 7695 -27 25 0 0 0 chr6 87039781 87039806 -95375436 + AT_rich Low_complexity Low_complexity 1 25 0 1552 222 3 22 chr6 87041584 87041940 -95373302 - MLT1A2 LTR MaLR -2 372 24 3143 147 52 7 chr6 87041989 87042560 -95372682 - MER50 LTR ERV1 -23 711 115 327 324 14 14 chr6 87042567 87042712 -95372530 + LOR1-int LTR ERV1 4989 5133 -1989 365 299 58 40 chr6 87042825 87043103 -95372139 + LOR1-int LTR ERV1 7383 7665 -455 626 71 30 0 chr6 87043129 87043228 -95372014 - HSMAR1 DNA Mariner -1183 104 3 2194 211 22 46 chr6 87043888 87044434 -95370808 + MER87 LTR ERV1 1 533 -8 183 80 0 0 chr6 87044474 87044499 -95370743 + (TA)n Simple_repeat Simple_repeat 2 26 0 212 263 147 21 chr6 87044637 87044732 -95370510 + L3 LINE CR1 1433 1539 -38 2119 159 64 10 chr6 87044746 87045137 -95370105 + MLT2D LTR ERVL 1 412 -2 200 363 88 9 chr6 87046258 87046371 -95368871 + L2 LINE L2 3025 3146 -167 673 219 32 91 chr6 87046402 87046621 -95368621 + MIR SINE MIR 29 234 -28 406 315 47 0 chr6 87046661 87046788 -95368454 + L2 LINE L2 3172 3304 -9 788 274 134 50 chr6 87047580 87048377 -95366865 - HAL1 LINE L1 -1114 1393 530 243 290 110 0 chr6 87048623 87048723 -95366519 + MER115 DNA AcHobo 346 456 -237 231 253 168 11 chr6 87048764 87048859 -95366383 + MIR3 SINE MIR 94 203 -5 1025 251 59 49 chr6 87049594 87050084 -95365158 + REP3 LTR ERV 21 515 -47 241 291 76 44 chr6 87050294 87050452 -95364790 - MLT1L LTR MaLR -236 379 217 203 349 174 27 chr6 87051292 87051441 -95363801 + L2 LINE L2 3097 3267 -5 1456 268 85 20 chr6 87051640 87052331 -95362911 + L1MC4a LINE L1 5260 5995 -1813 27 29 0 0 chr6 87052437 87052471 -95362771 + AT_rich Low_complexity Low_complexity 1 34 0 283 253 40 0 chr6 87052496 87052571 -95362671 + MIR SINE MIR 37 114 -148 201 210 0 0 chr6 87054146 87054208 -95361034 + T-rich Low_complexity Low_complexity 1 62 0 435 110 305 78 chr6 87054581 87054735 -95360507 + MER53 DNA DNA 1 189 0 213 226 57 0 chr6 87055672 87055725 -95359517 + L2 LINE L2 3258 3313 0 442 262 28 35 chr6 87056152 87056297 -95358945 - MIR SINE MIR -44 218 75 1468 92 0 0 chr6 87056549 87056744 -95358498 + L1PA7 LINE L1 5947 6141 -13 28 0 0 0 chr6 87056745 87056773 -95358469 + AT_rich Low_complexity Low_complexity 1 28 0 357 237 11 32 chr6 87056829 87056922 -95358320 - MER5A DNA MER1_type -43 146 56 263 284 49 0 chr6 87057359 87057440 -95357802 - L2 LINE L2 0 3272 3188 318 243 107 19 chr6 87058556 87058659 -95356583 - L2 LINE L2 -9 3304 3193 428 313 106 18 chr6 87058729 87058956 -95356286 + MIR SINE MIR 16 262 0 327 200 63 32 chr6 87059318 87059413 -95355829 - MER103 DNA DNA -57 109 12 211 333 0 0 chr6 87059560 87059614 -95355628 + MIR SINE MIR 59 112 -150 198 253 154 95 chr6 87059833 87060106 -95355136 - L2 LINE L2 -807 2507 2219 247 380 53 0 chr6 87060107 87060220 -95355022 + L2 LINE L2 3154 3272 0 716 238 31 48 chr6 87060802 87061096 -95354146 - L1MC5 LINE L1 -48 7913 7625 204 222 22 0 chr6 87061482 87061527 -95353715 + GA-rich Low_complexity Low_complexity 4 49 0 276 247 106 0 chr6 87061668 87061753 -95353489 - MIR SINE MIR -65 197 104 325 214 138 41 chr6 87062928 87063073 -95352169 - MLT1K LTR MaLR -16 572 414 325 216 55 0 chr6 87063073 87063155 -95352087 + MSTD LTR MaLR 5 80 -348 14037 152 35 73 chr6 87063155 87064683 -95350559 + L1MA2 LINE L1 21 1605 -5960 336 48 0 0 chr6 87064683 87064725 -95350517 + (CA)n Simple_repeat Simple_repeat 1 42 0 240 35 0 0 chr6 87064724 87064753 -95350489 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 14037 152 35 73 chr6 87064725 87066077 -95349165 + L1MA2 LINE L1 1605 3006 -4559 2249 102 0 0 chr6 87066077 87066388 -95348854 + AluSx SINE Alu 1 311 0 14037 152 35 73 chr6 87066388 87066490 -95348752 + L1MA2 LINE L1 3006 3110 -4455 1158 71 0 0 chr6 87066490 87066631 -95348611 + AluY SINE Alu 156 296 -15 14037 152 35 73 chr6 87066631 87067254 -95347988 + L1MA2 LINE L1 3110 3866 -3699 9875 173 14 11 chr6 87067281 87067677 -95347565 + L1MA2 LINE L1 4102 4495 -3070 5269 134 29 3 chr6 87067677 87069102 -95346140 + L1PA14 LINE L1 4713 6161 0 9875 173 14 11 chr6 87069102 87070810 -95344432 + L1MA2 LINE L1 4495 6213 -1352 1263 96 0 0 chr6 87070810 87071001 -95344241 + AluSg/x SINE Alu 125 315 0 6450 133 14 7 chr6 87071001 87072513 -95342729 + L1MA2 LINE L1 6203 7723 0 1469 194 24 33 chr6 87072524 87072854 -95342388 + MSTD LTR MaLR 70 396 0 884 291 35 4 chr6 87072854 87073112 -95342130 - MLT1K LTR MaLR -169 419 154 231 150 67 0 chr6 87073250 87073310 -95341932 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1150 238 129 74 chr6 87073770 87073917 -95341325 + MER69B DNA AcHobo 3 141 -2385 1903 112 2 122 chr6 87073917 87074311 -95340931 + L1PA16 LINE L1 5809 6155 -11 1150 238 129 74 chr6 87074311 87074917 -95340325 + MER69B DNA AcHobo 141 865 -1661 1639 170 79 0 chr6 87074917 87075194 -95340048 + AluJo SINE Alu 2 300 -12 1150 238 129 74 chr6 87075194 87075218 -95340024 + MER69B DNA AcHobo 865 886 -340 4173 73 6 21 chr6 87075858 87076898 -95338344 - MER11A LTR ERVK 0 1266 1 2105 221 84 43 chr6 87076955 87077918 -95337324 + L1ME2 LINE L1 4503 5522 -644 2499 71 0 0 chr6 87077918 87078212 -95337030 - AluY SINE Alu -17 294 1 2105 221 84 43 chr6 87078212 87078437 -95336805 + L1ME2 LINE L1 5522 5736 -430 1436 211 130 33 chr6 87078439 87078849 -95336393 - MSTB2 LTR MaLR 0 457 4 831 241 32 4 chr6 87078851 87079100 -95336142 + L1ME2 LINE L1 5736 5991 -173 2017 179 6 15 chr6 87079141 87079481 -95335761 + MER1B DNA MER1_type 1 337 0 238 325 162 0 chr6 87081308 87081462 -95333780 + MIR3 SINE MIR 30 208 0 226 346 10 10 chr6 87081618 87081722 -95333520 - MIR SINE MIR -110 152 49 643 153 30 124 chr6 87081965 87082167 -95333075 + MER96B DNA MER1_type? 1 183 -234 232 258 0 52 chr6 87082255 87082352 -95332890 + MLT1L LTR MaLR 506 597 -18 268 73 0 0 chr6 87083063 87083104 -95332138 - MADE1 DNA Mariner -37 43 3 1594 174 12 64 chr6 87083943 87084270 -95330972 + AluJb SINE Alu 3 312 0 184 316 105 0 chr6 87084270 87084327 -95330915 + MIR SINE MIR 45 107 -101 687 132 8 33 chr6 87084345 87084466 -95330776 - FRAM SINE Alu -17 159 42 1946 128 0 17 chr6 87084995 87085291 -95329951 - AluSx SINE Alu -3 309 19 23 0 0 0 chr6 87085585 87085608 -95329634 + AT_rich Low_complexity Low_complexity 1 23 0 383 275 227 19 chr6 87086033 87086240 -95329002 - MIR SINE MIR 0 262 13 487 299 109 11 chr6 87086823 87087007 -95328235 - MIR SINE MIR -11 251 50 474 342 69 57 chr6 87087063 87087452 -95327790 + HAL1 LINE L1 3 396 -2111 447 331 64 25 chr6 87087940 87088221 -95327021 + LTR16C LTR ERVL 198 489 -2 2313 62 0 74 chr6 87088899 87089224 -95326018 - AluSc SINE Alu -8 301 1 819 320 51 31 chr6 87089264 87090099 -95325143 - ERVL LTR ERVL -190 5464 4590 464 304 21 54 chr6 87090100 87090340 -95324902 + MLT1J2 LTR MaLR 2 233 -217 365 235 99 26 chr6 87090677 87090890 -95324352 - ERVL LTR ERVL -1337 4427 4136 1447 199 149 46 chr6 87090911 87091179 -95324063 - MLT1D LTR MaLR 0 505 177 2104 102 4 0 chr6 87091179 87091454 -95323788 - AluSp SINE Alu -8 305 30 1447 199 149 46 chr6 87091454 87091601 -95323641 - MLT1D LTR MaLR -328 177 47 826 274 45 24 chr6 87091629 87092094 -95323148 - ERVL LTR ERVL -1596 4168 3665 749 336 93 21 chr6 87092104 87092535 -95322707 - LTR33 LTR ERVL -4 517 56 3036 312 99 58 chr6 87092583 87093259 -95321983 - ERVL LTR ERVL -2121 3643 2996 2408 62 0 43 chr6 87093259 87093584 -95321658 - AluY SINE Alu 0 311 1 3036 312 99 58 chr6 87093584 87095417 -95319825 - ERVL LTR ERVL -2768 2996 1030 395 319 36 60 chr6 87095687 87095938 -95319304 - ERVL LTR ERVL -5104 660 416 180 152 0 0 chr6 87097977 87098010 -95317232 + A-rich Low_complexity Low_complexity 2 34 0 560 157 0 11 chr6 87099243 87099332 -95315910 + FLAM SINE Alu 39 126 -17 32 0 0 0 chr6 87100756 87100788 -95314454 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr6 87101513 87101544 -95313698 + AT_rich Low_complexity Low_complexity 1 31 0 488 249 176 38 chr6 87102136 87102425 -95312817 + L2 LINE L2 2982 3310 -3 2138 124 0 3 chr6 87102658 87102957 -95312285 + AluSq SINE Alu 1 298 -15 32 67 0 0 chr6 87103247 87103307 -95311935 + AT_rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr6 87103322 87103357 -95311885 + AT_rich Low_complexity Low_complexity 1 35 0 1669 126 84 7 chr6 87105579 87105865 -95309377 - Tigger4(Zombi) DNA MER2_type 0 2731 2424 1274 144 16 0 chr6 87105875 87106069 -95309173 - Tigger4(Zombi) DNA MER2_type -2534 197 1 2587 65 0 3 chr6 87106300 87106610 -95308632 + AluSc SINE Alu 1 309 0 342 230 200 67 chr6 87108770 87108905 -95306337 + L2 LINE L2 3160 3312 -1 1897 151 3 0 chr6 87109675 87109959 -95305283 + AluJo SINE Alu 2 286 -26 421 288 200 5 chr6 87110941 87111146 -95304096 - MIR SINE MIR -14 248 4 35 0 0 0 chr6 87112364 87112399 -95302843 + AT_rich Low_complexity Low_complexity 1 35 0 877 151 0 14 chr6 87113848 87113994 -95301248 - AluJb SINE Alu -2 310 167 234 214 177 19 chr6 87114132 87114236 -95301006 + MIR SINE MIR 42 162 -46 1836 191 0 0 chr6 87114352 87114661 -95300581 - AluJb SINE Alu -3 309 1 25 0 0 0 chr6 87115895 87115920 -95299322 + AT_rich Low_complexity Low_complexity 1 25 0 26 82 0 0 chr6 87116253 87116314 -95298928 + AT_rich Low_complexity Low_complexity 1 61 0 217 195 403 0 chr6 87116420 87116497 -95298745 - MIR3 SINE MIR -6 202 95 360 326 152 19 chr6 87116760 87117024 -95298218 + L3 LINE CR1 1142 1440 -137 244 215 38 13 chr6 87117294 87117373 -95297869 + L1ME1 LINE L1 6084 6164 -2 2271 72 3 39 chr6 87117379 87117684 -95297558 + AluSx SINE Alu 1 294 -18 1760 173 0 0 chr6 87118341 87118651 -95296591 - AluJb SINE Alu 0 310 1 360 335 162 24 chr6 87118658 87118741 -95296501 - L2 LINE L2 -608 2706 2636 320 250 99 70 chr6 87118741 87118913 -95296329 + MER5B DNA MER1_type 1 177 -1 360 335 162 24 chr6 87118913 87119465 -95295777 - L2 LINE L2 -678 2636 1983 227 248 208 20 chr6 87119494 87119595 -95295647 + MIR SINE MIR 113 232 -30 274 237 323 27 chr6 87119766 87119952 -95295290 + MIR SINE MIR 22 262 0 205 330 78 39 chr6 87120653 87120756 -95294486 + MIR SINE MIR 57 163 -99 550 222 183 7 chr6 87120990 87121143 -95294099 + MER5A DNA MER1_type 10 189 0 193 339 102 8 chr6 87121601 87121719 -95293523 + L2 LINE L2 3180 3308 -5 657 214 21 0 chr6 87122630 87122770 -95292472 + MIR SINE MIR 120 262 0 345 253 168 54 chr6 87122824 87123037 -95292205 + MIR SINE MIR 19 255 -7 640 93 37 56 chr6 87123037 87123145 -95292097 - AluSq/x SINE Alu -203 110 5 2325 146 32 66 chr6 87124402 87124624 -95290618 - L1MB2 LINE L1 -8 6163 5935 342 0 0 0 chr6 87124624 87124662 -95290580 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1451 181 77 4 chr6 87124666 87124925 -95290317 - AluJb SINE Alu -34 278 1 2325 146 32 66 chr6 87124925 87125197 -95290045 - L1MB2 LINE L1 -239 5932 5681 286 281 22 22 chr6 87125780 87125869 -95289373 - MIR3 SINE MIR -37 171 83 21 82 0 0 chr6 87125898 87125947 -95289295 + AT_rich Low_complexity Low_complexity 1 49 0 650 321 5 25 chr6 87126298 87126494 -95288748 - MIR3 SINE MIR -14 194 3 701 176 15 0 chr6 87126700 87126831 -95288411 + AluJb SINE Alu 1 133 -179 215 270 101 22 chr6 87128776 87128865 -95286377 + L2 LINE L2 3146 3241 -31 216 0 0 0 chr6 87130108 87130132 -95285110 + (A)n Simple_repeat Simple_repeat 1 24 0 33 0 0 0 chr6 87132719 87132752 -95282490 + GC_rich Low_complexity Low_complexity 1 33 0 1104 207 130 4 chr6 87134927 87135188 -95280054 - AluJo SINE Alu -6 296 3 23 0 0 0 chr6 87135628 87135651 -95279591 + AT_rich Low_complexity Low_complexity 1 23 0 530 233 52 123 chr6 87135878 87136098 -95279144 - L1ME LINE L1 -317 5804 5625 1926 152 0 0 chr6 87136098 87136388 -95278854 - AluSx SINE Alu -20 292 3 530 233 52 123 chr6 87136388 87136575 -95278667 - L1ME LINE L1 -496 5625 5426 277 249 72 22 chr6 87136584 87136765 -95278477 - L1ME LINE L1 -760 5386 5197 865 297 102 70 chr6 87139204 87139622 -95275620 + L2 LINE L2 2174 2577 -695 2297 101 7 0 chr6 87139622 87139919 -95275323 - AluSg SINE Alu -11 299 1 865 297 102 70 chr6 87139919 87140370 -95274872 + L2 LINE L2 2577 3077 -195 386 250 0 53 chr6 87140416 87140548 -95274694 - MLT1J LTR MaLR 0 511 387 406 249 33 11 chr6 87140574 87140755 -95274487 + L1M4 LINE L1 2455 2639 -3507 331 252 74 7 chr6 87140776 87140911 -95274331 + L1M4 LINE L1 2701 2844 -3302 631 217 8 0 chr6 87140919 87141039 -95274203 + FLAM_C SINE Alu 1 121 -22 17059 43 1 0 chr6 87141060 87143193 -95272049 - L1P LINE L1 -2176 3970 1836 11416 37 3 0 chr6 87143193 87145360 -95269882 + L1PA5 LINE L1 3974 6154 0 1989 267 80 11 chr6 87145360 87146166 -95269076 + L1M4 LINE L1 2926 3790 -2356 10013 215 32 27 chr6 87146170 87149263 -95265979 + L1MC2 LINE L1 2447 5490 -743 429 163 65 85 chr6 87150116 87150269 -95264973 + MER51D LTR ERV1 501 650 -7 1726 141 26 26 chr6 87150404 87150716 -95264526 + L1MC2 LINE L1 5679 5990 -354 1184 308 24 12 chr6 87150708 87151134 -95264108 + L1PA13 LINE L1 1223 1653 -5928 * 9514 234 15 51 chr6 87151194 87154042 -95261200 + L1PA13 LINE L1 2463 5209 -2375 5375 135 27 1 chr6 87154042 87155440 -95259802 + L1PA13 LINE L1 6174 7595 -6 191 30 0 61 chr6 87155455 87155488 -95259754 + (TAAAAA)n Simple_repeat Simple_repeat 6 36 0 3207 183 19 37 chr6 87155819 87155972 -95259270 + L1MC3 LINE L1 5931 5614 -730 1911 118 42 14 chr6 87155972 87156133 -95259109 - AluSx SINE Alu -16 296 122 189 0 0 0 chr6 87156133 87156154 -95259088 + (TG)n Simple_repeat Simple_repeat 2 22 0 1911 118 42 14 chr6 87156154 87156280 -95258962 - AluSx SINE Alu -190 122 1 3207 183 19 37 chr6 87156280 87156797 -95258445 + L1MC3 LINE L1 5613 6138 -206 326 192 123 0 chr6 87156803 87156876 -95258366 - Tigger5 DNA MER2_type 0 2323 2242 * 437 192 13 0 chr6 87156866 87156944 -95258298 + Tigger5 DNA MER2_type 2242 2320 -3 274 206 176 15 chr6 87156944 87157011 -95258231 - Tigger5 DNA MER2_type -2245 78 1 3918 163 122 101 chr6 87157014 87157124 -95258118 + L1MC3 LINE L1 6619 6725 -1060 2492 51 0 10 chr6 87157124 87157435 -95257807 - AluY SINE Alu -3 308 1 3918 163 122 101 chr6 87157435 87157809 -95257433 + L1MC3 LINE L1 6725 7090 -695 288 219 27 14 chr6 87157809 87157882 -95257360 + MLT1F1 LTR MaLR 35 108 -459 3918 163 122 101 chr6 87157882 87158466 -95256776 + L1MC3 LINE L1 7090 7784 -1 265 259 196 9 chr6 87158591 87158703 -95256539 + MIR SINE MIR 128 260 -2 198 211 58 0 chr6 87158827 87158879 -95256363 + MIR SINE MIR 74 128 -134 246 303 212 38 chr6 87159077 87159209 -95256033 - L2 LINE L2 0 3272 3118 572 251 25 49 chr6 87159909 87160072 -95255170 + MER63A DNA MER1_type 52 210 0 297 344 182 0 chr6 87160074 87160228 -95255014 + L2 LINE L2 2484 2665 -649 555 282 218 32 chr6 87160335 87160711 -95254531 + L2 LINE L2 2863 3308 -5 25 65 0 0 chr6 87161045 87161091 -95254151 + AT_rich Low_complexity Low_complexity 1 46 0 2558 108 17 6 chr6 87161096 87161456 -95253786 + THE1B LTR MaLR 1 364 0 329 309 41 17 chr6 87162634 87162808 -95252434 + MIR SINE MIR 30 206 -56 1636 187 0 0 chr6 87163216 87163478 -95251764 - AluJo SINE Alu -30 282 21 258 242 67 117 chr6 87163771 87163891 -95251351 + L2 LINE L2 3159 3272 0 236 178 22 0 chr6 87163967 87164012 -95251230 + Charlie8 DNA MER1_type 131 176 -2241 1500 251 163 27 chr6 87164257 87164780 -95250462 + Zaphod DNA AcHobo 1 594 -3437 556 158 196 84 chr6 87164783 87165068 -95250174 + MER33 DNA MER1_type 8 324 0 * 718 165 114 59 chr6 87165068 87165378 -95249864 + Zaphod DNA AcHobo 619 910 -3121 841 201 11 11 chr6 87165378 87165552 -95249690 - FAM SINE Alu 0 175 2 718 165 114 59 chr6 87165552 87165573 -95249669 + Zaphod DNA AcHobo 910 928 -3103 2003 144 7 7 chr6 87165573 87165879 -95249363 + AluSq SINE Alu 1 306 -7 718 165 114 59 chr6 87165879 87165898 -95249344 + Zaphod DNA AcHobo 928 990 -3041 558 178 50 39 chr6 87165899 87166079 -95249163 + Zaphod DNA AcHobo 3598 3779 -252 1250 179 67 5 chr6 87166089 87166313 -95248929 + AluJo SINE Alu 67 304 -8 737 261 57 12 chr6 87166314 87166559 -95248683 + Zaphod DNA AcHobo 3775 4030 -1 311 358 15 40 chr6 87167269 87167470 -95247772 + MIR SINE MIR 26 221 -41 23 33 0 0 chr6 87167598 87167628 -95247614 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 87168443 87168464 -95246778 + AT_rich Low_complexity Low_complexity 1 21 0 307 308 150 17 chr6 87170677 87170797 -95244445 - L2 LINE L2 -1 3271 3136 907 294 54 53 chr6 87170799 87171393 -95243849 - L2 LINE L2 0 3313 2713 241 291 0 0 chr6 87172178 87172233 -95243009 + (TG)n Simple_repeat Simple_repeat 2 56 0 1912 204 37 0 chr6 87172283 87172631 -95242611 + MLT1A1 LTR MaLR 1 361 -4 197 178 22 0 chr6 87172642 87172687 -95242555 + (TA)n Simple_repeat Simple_repeat 2 47 0 231 234 96 11 chr6 87172687 87172781 -95242461 + L1MC4 LINE L1 6614 6715 -1327 2934 216 56 65 chr6 87172840 87173680 -95241562 + L1ME1 LINE L1 4701 5539 -627 2067 137 85 40 chr6 87173680 87173960 -95241282 + MLT2A1 LTR ERVL 1 308 -136 271 43 0 43 chr6 87173960 87174007 -95241235 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 2067 137 85 40 chr6 87174007 87174151 -95241091 + MLT2A1 LTR ERVL 308 444 0 2934 216 56 65 chr6 87174151 87174770 -95240472 + L1ME1 LINE L1 5539 6162 -4 247 251 183 95 chr6 87175305 87175742 -95239500 - L2 LINE L2 -269 3044 2551 768 193 57 52 chr6 87176028 87176240 -95239002 + MLT1B LTR MaLR 1 213 -161 2067 102 0 0 chr6 87176262 87176638 -95238604 + AluSq SINE Alu 40 415 0 1004 175 0 0 chr6 87176644 87176804 -95238438 + MLT1B LTR MaLR 231 390 0 2566 151 19 14 chr6 87176885 87177241 -95238001 + MSTB LTR MaLR 1 361 -65 1833 150 20 10 chr6 87177241 87177554 -95237688 - AluSx SINE Alu 0 312 1 2566 151 19 14 chr6 87177554 87177621 -95237621 + MSTB LTR MaLR 361 426 0 8619 174 15 44 chr6 87177621 87178113 -95237129 + MSTB-int LTR MaLR 1 506 -1145 1572 185 11 4 chr6 87178113 87178422 -95236820 + AluJb SINE Alu 1 311 0 8619 174 15 44 chr6 87178422 87178664 -95236578 + MSTB-int LTR MaLR 506 753 -898 2059 163 85 12 chr6 87178664 87179063 -95236179 + MSTA LTR MaLR 1 428 0 8619 174 15 44 chr6 87179063 87180026 -95235216 + MSTB-int LTR MaLR 753 1651 0 2451 181 14 2 chr6 87180026 87180445 -95234797 + MSTB LTR MaLR 1 424 -2 869 224 59 12 chr6 87181051 87181373 -95233869 - L1MEc LINE L1 -3982 2414 2078 1089 161 66 38 chr6 87181432 87181755 -95233487 - MER33 DNA MER1_type -1 323 1 3131 235 81 34 chr6 87181758 87182209 -95233033 - L1MEc LINE L1 -4351 2045 1617 3021 113 26 60 chr6 87182209 87182362 -95232880 + MER75 DNA T2_type 1 158 -356 1774 131 109 0 chr6 87182362 87182637 -95232605 + AluSx SINE Alu 1 305 -7 3021 113 26 60 chr6 87182637 87183015 -95232227 + MER75 DNA T2_type 158 514 0 3131 235 81 34 chr6 87183015 87183807 -95231435 - L1MEc LINE L1 -4779 1617 743 1640 281 78 21 chr6 87183808 87184423 -95230819 - L1MEc LINE L1 -5701 695 46 464 351 148 29 chr6 87184451 87185148 -95230094 - L3 LINE CR1 -729 848 69 234 0 0 0 chr6 87185231 87185257 -95229985 + (TA)n Simple_repeat Simple_repeat 2 27 0 2365 86 3 3 chr6 87185257 87185559 -95229683 - AluSp SINE Alu -11 302 1 248 167 0 128 chr6 87185583 87185661 -95229581 + AluJ/FLAM SINE Alu 1 68 -234 1581 173 0 0 chr6 87185621 87185875 -95229367 + AluJb SINE Alu 29 282 -30 291 54 0 0 chr6 87185882 87185919 -95229323 + (CA)n Simple_repeat Simple_repeat 1 37 0 186 43 0 0 chr6 87186577 87186600 -95228642 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 650 208 29 64 chr6 87186915 87187088 -95228154 - L2 LINE L2 -8 3305 3139 579 154 26 8 chr6 87187112 87187229 -95228013 - Charlie5 DNA MER1_type 0 2624 2506 1169 216 22 26 chr6 87187232 87187500 -95227742 - L1MD3 LINE L1 -25 7970 7704 1261 163 43 18 chr6 87187506 87187788 -95227454 - Charlie5 DNA MER1_type -75 2537 2249 380 85 19 132 chr6 87187867 87187973 -95227269 - Charlie5 DNA MER1_type -2485 127 34 2052 252 86 12 chr6 87187973 87188565 -95226677 - L2 LINE L2 -519 2795 2160 562 241 127 6 chr6 87191164 87191330 -95223912 + L2 LINE L2 3126 3311 -2 21 57 0 0 chr6 87193360 87193395 -95221847 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr6 87194050 87194089 -95221153 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr6 87195127 87195148 -95220094 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 87196139 87196168 -95219074 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr6 87198345 87198383 -95216859 + AT_rich Low_complexity Low_complexity 1 38 0 271 185 200 0 chr6 87200624 87200689 -95214553 - MER81 DNA DNA -22 92 15 1761 245 113 43 chr6 87200916 87201759 -95213483 - L1ME3 LINE L1 -23 6139 5236 579 275 126 51 chr6 87201763 87202119 -95213123 - MER34B LTR ERV1 0 565 183 930 261 156 17 chr6 87202148 87202395 -95212847 - L1ME3 LINE L1 -1082 5064 4853 1941 161 0 3 chr6 87202395 87202699 -95212543 - AluJo SINE Alu -9 303 1 930 261 156 17 chr6 87202699 87203042 -95212200 - L1ME3 LINE L1 -1293 4853 4392 1117 172 43 38 chr6 87203106 87203315 -95211927 + AluJb SINE Alu 85 294 -18 1316 259 75 23 chr6 87203316 87203454 -95211788 - L1ME3 LINE L1 -1796 4350 4221 2259 89 0 35 chr6 87203454 87203769 -95211473 + AluSx SINE Alu 1 304 -8 1316 259 75 23 chr6 87203769 87204228 -95211014 - L1ME3 LINE L1 -1925 4221 3722 750 200 7 0 chr6 87204362 87204497 -95210745 - LTR38 LTR ERV1 0 556 421 5803 152 58 35 chr6 87204524 87204786 -95210456 - LTR57-int LTR ERVL -3748 1595 1306 12453 101 17 12 chr6 87204786 87206563 -95208679 - LTR38-int LTR ERV1 0 1786 1 3226 138 32 6 chr6 87206563 87207101 -95208141 - LTR38 LTR ERV1 0 556 5 978 219 20 5 chr6 87207834 87208030 -95207212 + MER58A DNA MER1_type 26 224 0 194 321 143 40 chr6 87208050 87208274 -95206968 + L3 LINE CR1 445 691 -886 1731 178 78 24 chr6 87208276 87208432 -95206810 - Charlie1b DNA MER1_type -2238 523 377 2316 71 0 0 chr6 87208432 87208739 -95206503 + AluY SINE Alu 1 307 0 1731 178 78 24 chr6 87208739 87208992 -95206250 - Charlie1b DNA MER1_type -2384 377 91 4010 150 24 13 chr6 87209147 87209853 -95205389 + L1MB8 LINE L1 5408 6121 -57 548 335 197 4 chr6 87209868 87210370 -95204872 + L2 LINE L2 354 952 -2362 512 344 10 60 chr6 87210460 87210698 -95204544 + L3 LINE CR1 1264 1485 -92 854 216 68 59 chr6 87210698 87210920 -95204322 - MER58A DNA MER1_type 0 224 1 512 344 10 60 chr6 87210920 87210983 -95204259 + L3 LINE CR1 1485 1550 -27 24 32 0 0 chr6 87211402 87211433 -95203809 + AT_rich Low_complexity Low_complexity 1 31 0 207 294 103 78 chr6 87211661 87211843 -95203399 + MIR SINE MIR 2 179 -59 345 205 48 36 chr6 87212490 87212573 -95202669 - L2 LINE L2 -10 3303 3220 26 0 0 0 chr6 87212974 87213000 -95202242 + AT_rich Low_complexity Low_complexity 1 26 0 2068 119 0 0 chr6 87213405 87213738 -95201504 - AluSx SINE Alu 0 333 1 779 276 75 0 chr6 87213954 87214182 -95201060 + MIR SINE MIR 11 255 -7 658 210 77 50 chr6 87214229 87214459 -95200783 + L1MB4 LINE L1 5934 6168 -12 221 262 16 0 chr6 87214590 87214651 -95200591 - L2 LINE L2 0 3313 3252 192 324 127 0 chr6 87215479 87215550 -95199692 - MIR SINE MIR -123 139 60 1622 162 175 10 chr6 87215553 87215910 -95199332 - MSTB LTR MaLR 0 373 1 1047 137 22 6 chr6 87216006 87216188 -95199054 + AluSg/x SINE Alu 119 303 -7 41 0 0 0 chr6 87216266 87216307 -95198935 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr6 87216703 87216725 -95198517 + AT_rich Low_complexity Low_complexity 1 22 0 1811 285 170 12 chr6 87217198 87217967 -95197275 + L2 LINE L2 1784 2674 -640 1449 171 80 58 chr6 87217979 87218377 -95196865 - L1MA7 LINE L1 -11 6280 5874 712 253 59 46 chr6 87218410 87218714 -95196528 + L2 LINE L2 3005 3312 -1 658 221 0 0 chr6 87219616 87219747 -95195495 - FLAM_A SINE Alu -2 131 1 1045 217 49 20 chr6 87221213 87221457 -95193785 + MIR SINE MIR 2 252 -10 26 0 0 0 chr6 87222631 87222657 -95192585 + AT_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr6 87222986 87223018 -95192224 + (TAA)n Simple_repeat Simple_repeat 3 34 0 419 326 86 20 chr6 87223535 87223780 -95191462 + MIR SINE MIR 2 262 0 198 298 129 48 chr6 87224010 87224134 -95191108 - MIR SINE MIR -18 244 111 22 0 0 0 chr6 87224470 87224492 -95190750 + AT_rich Low_complexity Low_complexity 1 22 0 29 78 0 0 chr6 87224716 87224780 -95190462 + AT_rich Low_complexity Low_complexity 1 64 0 31 26 0 0 chr6 87226806 87226844 -95188398 + AT_rich Low_complexity Low_complexity 1 38 0 4770 152 104 40 chr6 87228064 87229167 -95186075 - L1MC1 LINE L1 -1 6332 5185 292 286 74 49 chr6 87230146 87230349 -95184893 - L1ME LINE L1 -603 5559 5352 1308 189 3 51 chr6 87230597 87230893 -95184349 + AluJo SINE Alu 1 282 -30 698 269 86 86 chr6 87230934 87231782 -95183460 - L1ME LINE L1 -1529 4617 3770 420 266 45 47 chr6 87231787 87231991 -95183251 - MLT1H LTR MaLR 0 549 289 815 278 184 3 chr6 87231991 87232372 -95182870 - LTR16A LTR ERVL 0 450 1 516 264 63 63 chr6 87232379 87232648 -95182594 - MLT1H LTR MaLR -268 281 13 495 298 108 25 chr6 87232658 87233020 -95182222 - L1ME LINE L1 -2381 3765 3374 472 215 19 0 chr6 87233070 87233177 -95182065 - LTR39 LTR ERV1 -63 720 612 16132 62 4 2 chr6 87233211 87236083 -95179159 - L1PA6 LINE L1 -6 6148 3272 212 231 46 31 chr6 87236399 87236464 -95178778 + GA-rich Low_complexity Low_complexity 3 68 0 28 29 0 0 chr6 87237224 87237259 -95177983 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr6 87237625 87237664 -95177578 + AT_rich Low_complexity Low_complexity 1 39 0 6464 92 1 2 chr6 87238115 87239068 -95176174 + L1P LINE L1 4099 5050 -1096 19649 56 2 1 chr6 87239169 87241756 -95173486 - L1PA6 LINE L1 -3555 2591 4 194 147 0 29 chr6 87241757 87241791 -95173451 + MER5A DNA MER1_type 125 157 -32 252 0 0 0 chr6 87241837 87241865 -95173377 + (TA)n Simple_repeat Simple_repeat 2 29 0 1798 157 28 3 chr6 87241865 87242152 -95173090 - AluJo SINE Alu -18 294 1 269 290 102 45 chr6 87242643 87242819 -95172423 - MER5A DNA MER1_type -3 186 1 327 290 99 15 chr6 87243060 87243191 -95172051 - MIR3 SINE MIR -46 162 21 339 105 63 0 chr6 87243195 87243237 -95172005 + (TA)n Simple_repeat Simple_repeat 2 40 -62 2168 112 0 0 chr6 87243237 87243532 -95171710 + AluY SINE Alu 1 295 -16 339 105 63 0 chr6 87243532 87243584 -95171658 + (TA)n Simple_repeat Simple_repeat 40 102 0 197 284 104 15 chr6 87243890 87243957 -95171285 + MIR SINE MIR 40 112 -150 276 268 62 45 chr6 87244026 87244138 -95171104 + MIR SINE MIR 137 250 -12 749 271 53 20 chr6 87244202 87244446 -95170796 + MIR SINE MIR 11 262 0 554 278 41 30 chr6 87245063 87245333 -95169909 + MLT1L LTR MaLR 1 273 -342 522 256 62 17 chr6 87245444 87245469 -95169773 + MLT1L LTR MaLR 424 446 -169 216 0 0 0 chr6 87245469 87245493 -95169749 + (TA)n Simple_repeat Simple_repeat 2 25 0 522 256 62 17 chr6 87245493 87245643 -95169599 + MLT1L LTR MaLR 446 607 -8 437 361 73 0 chr6 87246023 87246242 -95169000 + MIR SINE MIR 2 236 -26 304 255 49 29 chr6 87246370 87246472 -95168770 - MIR3 SINE MIR -21 187 84 304 299 56 28 chr6 87248634 87248832 -95166410 - MIR3 SINE MIR -42 220 14 281 310 90 98 chr6 87249626 87249881 -95165361 + L2 LINE L2 2997 3249 -23 1544 153 8 8 chr6 87250078 87250319 -95164923 - AluSx SINE Alu -12 300 60 318 225 56 0 chr6 87250546 87250617 -95164625 - MER2 DNA MER2_type -2 343 269 235 204 0 0 chr6 87250661 87250710 -95164532 - MER2 DNA MER2_type -139 206 158 26 0 0 0 chr6 87251309 87251335 -95163907 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr6 87257862 87257886 -95157356 + GC_rich Low_complexity Low_complexity 1 24 0 931 147 24 12 chr6 87257899 87258069 -95157173 - MER2 DNA MER2_type -172 173 2 630 156 39 0 chr6 87258069 87258223 -95157019 + (TA)n Simple_repeat Simple_repeat 2 161 0 221 355 118 31 chr6 87258535 87258856 -95156386 - L2 LINE L2 -456 2858 2510 226 333 75 0 chr6 87259188 87259281 -95155961 + 7SLRNA srpRNA srpRNA 42 141 -179 556 269 196 0 chr6 87259481 87259700 -95155542 - MIR SINE MIR 0 262 1 4661 191 33 34 chr6 87259737 87260954 -95154288 - L1 LINE L1 -3597 3570 2347 2285 113 3 0 chr6 87260954 87261254 -95153988 - AluSg SINE Alu -9 301 1 4661 191 33 34 chr6 87261254 87262223 -95153019 - L1 LINE L1 -4820 2347 1379 18874 60 8 4 chr6 87262329 87262739 -95152503 + L1PA6 LINE L1 2755 3162 -2992 2170 87 10 7 chr6 87262739 87263038 -95152204 + AluY SINE Alu 1 300 -11 18874 60 8 4 chr6 87263038 87265873 -95149369 + L1PA6 LINE L1 3162 6013 -141 333 0 0 0 chr6 87267591 87267628 -95147614 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 53 0 0 chr6 87318414 87318452 -95096790 + AT_rich Low_complexity Low_complexity 1 38 0 2329 107 0 0 chr6 87318865 87319165 -95096077 - AluSx SINE Alu -10 302 3 306 411 48 7 chr6 87319463 87319609 -95095633 - MIR3 SINE MIR -51 157 6 251 250 52 69 chr6 87320200 87320316 -95094926 - MIR3 SINE MIR 0 208 95 332 323 149 8 chr6 87320676 87320911 -95094331 - L1M4 LINE L1 -1114 5032 4765 513 314 37 11 chr6 87320959 87321147 -95094095 + MIR SINE MIR 20 212 -50 1313 99 41 120 chr6 87321961 87322203 -95093039 + AluSg/x SINE Alu 78 300 -12 250 330 152 0 chr6 87322213 87322325 -95092917 - MER5A DNA MER1_type -59 130 2 1593 182 6 35 chr6 87322336 87322655 -95092587 - AluJo SINE Alu -2 310 1 328 298 226 0 chr6 87324203 87324371 -95090871 - MIR SINE MIR -6 256 51 440 225 32 145 chr6 87324549 87324830 -95090412 - L1MEc LINE L1 -4272 2124 1900 814 186 0 0 chr6 87324830 87324959 -95090283 - FLAM_C SINE Alu 0 133 5 440 225 32 145 chr6 87324959 87325077 -95090165 - L1MEc LINE L1 -4496 1900 1770 727 208 207 46 chr6 87325090 87325413 -95089829 - L1 LINE L1 -2841 3305 2842 2144 130 125 13 chr6 87325413 87325798 -95089444 - MSTA LTR MaLR 0 428 1 727 208 207 46 chr6 87325798 87325886 -95089356 - L1 LINE L1 -3304 2842 2770 1022 201 6 0 chr6 87325888 87326062 -95089180 - FAM SINE Alu -5 44 1 2194 211 27 10 chr6 87326078 87326662 -95088580 - L1M4 LINE L1 -3382 2764 2171 1464 227 41 26 chr6 87326695 87327158 -95088084 - L1M4 LINE L1 -2225 3921 3452 439 270 58 63 chr6 87328060 87328234 -95087008 + MER5A DNA MER1_type 15 187 -2 242 302 57 19 chr6 87328286 87328392 -95086850 + MIR SINE MIR 79 188 -74 322 278 48 48 chr6 87328810 87329019 -95086223 - MLT1I LTR MaLR -175 234 26 380 233 0 0 chr6 87329039 87329112 -95086130 - MER5B DNA MER1_type -105 73 1 193 128 0 51 chr6 87329479 87329518 -95085724 - MER5B DNA MER1_type -30 148 112 620 304 173 3 chr6 87329988 87330277 -95084965 - L3 LINE CR1 -68 1509 1172 1250 220 109 16 chr6 87330489 87330875 -95084367 + MLT1C LTR MaLR 46 467 0 3240 158 81 72 chr6 87331117 87331272 -95083970 - L1MB7 LINE L1 -1 6183 6031 2582 3 0 0 chr6 87331272 87331597 -95083645 + AluYa5 SINE Alu 1 325 0 3240 158 81 72 chr6 87331597 87332319 -95082923 - L1MB7 LINE L1 -153 6031 5297 2594 267 72 20 chr6 87332298 87332799 -95082443 - L1MC1 LINE L1 -2 6331 5858 * 2401 92 13 0 chr6 87332799 87333104 -95082138 - AluSx SINE Alu -3 309 1 2594 267 72 20 chr6 87333104 87333449 -95081793 - L1MC1 LINE L1 -475 5858 5249 426 376 84 42 chr6 87334570 87334996 -95080246 + L2 LINE L2 2809 3252 -20 338 91 52 0 chr6 87337060 87337137 -95078105 + (TA)n Simple_repeat Simple_repeat 2 82 0 258 32 0 0 chr6 87337186 87337217 -95078025 + (TG)n Simple_repeat Simple_repeat 2 32 0 277 289 0 0 chr6 87337247 87337337 -95077905 - L1MC4 LINE L1 -1339 6703 6614 244 288 0 54 chr6 87337261 87337372 -95077870 + L1MC4 LINE L1 6614 6718 -1324 * 209 318 47 47 chr6 87337394 87337501 -95077741 - MIR3 SINE MIR -100 108 2 457 291 81 49 chr6 87337752 87337999 -95077243 - MIR SINE MIR -1 261 7 264 221 103 37 chr6 87338267 87338351 -95076891 - L1ME4a LINE L1 -3 6118 6020 2374 78 0 13 chr6 87338351 87338660 -95076582 + AluSc SINE Alu 2 306 -3 264 221 103 37 chr6 87338660 87338711 -95076531 - L1ME4a LINE L1 -101 6020 5974 614 265 85 38 chr6 87338884 87339095 -95076147 + MIR SINE MIR 29 249 -13 609 219 89 7 chr6 87339570 87339716 -95075526 - MIR SINE MIR -76 186 29 549 309 16 36 chr6 87340085 87340502 -95074740 - MER51A-int LTR ERV1 -1621 3900 2993 2784 155 4 8 chr6 87341309 87341792 -95073450 - MER51A-int LTR ERV1 -5274 2846 2366 * 3860 146 76 22 chr6 87341787 87342812 -95072430 - MER51A-int LTR ERV1 -6735 1081 343 2204 179 63 59 chr6 87342890 87343415 -95071827 - MER51A-int LTR ERV1 -7289 527 1 3301 99 164 22 chr6 87343416 87343970 -95071272 - MER51A LTR ERV1 -1 633 1 724 266 101 45 chr6 87344005 87344016 -95071226 - L2 LINE L2 -751 2563 2554 1968 142 3 10 chr6 87344016 87344319 -95070923 - AluJb SINE Alu -11 301 1 724 266 101 45 chr6 87344319 87344664 -95070578 - L2 LINE L2 -760 2554 2187 1016 178 0 12 chr6 87344913 87345082 -95070160 - FAM SINE Alu -8 167 1 214 268 0 84 chr6 87345337 87345408 -95069834 - L2 LINE L2 -2 3270 3206 2083 87 8 0 chr6 87345408 87345674 -95069568 - AluY SINE Alu -13 298 31 550 234 0 16 chr6 87346172 87346296 -95068946 - L2 LINE L2 0 3313 3192 23 0 0 0 chr6 87346765 87346788 -95068454 + AT_rich Low_complexity Low_complexity 1 23 0 3296 109 40 8 chr6 87347236 87347731 -95067511 + MER9 LTR ERVK 1 511 0 3789 129 8 39 chr6 87347937 87348574 -95066668 - Tigger1 DNA MER2_type 0 2418 1802 1200 105 29 57 chr6 87348569 87348778 -95066464 - Tigger1 DNA MER2_type -563 1855 1653 * 1120 165 37 9 chr6 87348778 87348996 -95066246 + AluSx SINE Alu 1 224 -88 228 67 0 0 chr6 87349006 87349036 -95066206 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 233 167 0 56 chr6 87349036 87349090 -95066152 - Tigger1 DNA MER2_type -755 1663 1613 13570 66 7 3 chr6 87349249 87351235 -95064007 - L1P2 LINE L1 -577 5577 3582 4524 62 18 35 chr6 87351235 87352269 -95062973 - MER11A LTR ERVK 0 1266 3 1633 58 0 0 chr6 87352271 87352476 -95062766 - L1P2 LINE L1 -2559 3587 3383 26 30 0 0 chr6 87353154 87353187 -95062055 + AT_rich Low_complexity Low_complexity 1 33 0 229 194 14 14 chr6 87353274 87353346 -95061896 + (TA)n Simple_repeat Simple_repeat 2 73 0 351 214 119 57 chr6 87353769 87353907 -95061335 + MIR3 SINE MIR 9 160 -48 813 182 62 89 chr6 87353907 87354005 -95061237 + MER20 DNA MER1_type 1 100 -119 324 0 0 0 chr6 87354005 87354041 -95061201 + (TG)n Simple_repeat Simple_repeat 1 36 0 813 182 62 89 chr6 87354041 87354167 -95061075 + MER20 DNA MER1_type 100 219 0 351 214 119 57 chr6 87354167 87354187 -95061055 + MIR3 SINE MIR 160 177 -31 22 35 0 0 chr6 87354253 87354282 -95060960 + AT_rich Low_complexity Low_complexity 1 29 0 1642 154 82 56 chr6 87354765 87355121 -95060121 - MLT2D LTR ERVL -49 365 1 21 0 0 0 chr6 87355481 87355502 -95059740 + AT_rich Low_complexity Low_complexity 1 21 0 528 239 42 24 chr6 87355779 87355946 -95059296 - L1ME4a LINE L1 -7 6114 5945 367 245 53 0 chr6 87356086 87356180 -95059062 - MIR SINE MIR -3 259 161 658 314 88 48 chr6 87356271 87356746 -95058496 + L2 LINE L2 2210 2703 -611 2271 105 0 0 chr6 87356779 87357073 -95058169 - AluSg SINE Alu -16 294 1 29 28 0 0 chr6 87357120 87357156 -95058086 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 87357187 87357208 -95058034 + AT_rich Low_complexity Low_complexity 1 21 0 2317 109 0 0 chr6 87358771 87359073 -95056169 - AluSx SINE Alu -8 304 3 317 200 14 14 chr6 87359612 87359682 -95055560 + MIR3 SINE MIR 112 181 -27 2024 140 3 0 chr6 87359865 87360184 -95055058 - AluSx SINE Alu 0 312 1 28 0 0 0 chr6 87360622 87360650 -95054592 + AT_rich Low_complexity Low_complexity 1 28 0 2575 159 42 6 chr6 87360798 87361295 -95053947 - L1MB3 LINE L1 -7 6176 5662 3023 180 33 30 chr6 87361303 87362222 -95053020 + L1MB3 LINE L1 4697 5630 -553 195 100 0 0 chr6 87362508 87362538 -95052704 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 568 212 0 0 chr6 87362539 87362638 -95052604 - FRAM SINE Alu -30 146 48 734 188 114 0 chr6 87362785 87362934 -95052308 + MER20 DNA MER1_type 43 208 -11 1514 173 35 28 chr6 87362934 87363223 -95052019 + AluJo SINE Alu 1 291 -21 18264 31 1 0 chr6 87363425 87366405 -95048837 - L1PA3 LINE L1 0 6155 3183 22 70 0 0 chr6 87367365 87367408 -95047834 + AT_rich Low_complexity Low_complexity 1 43 0 546 179 41 16 chr6 87371208 87371331 -95043911 - MER5B DNA MER1_type -52 126 1 1383 245 61 16 chr6 87371560 87371939 -95043303 + HAL1 LINE L1 1 396 -2111 719 181 0 0 chr6 87371988 87372115 -95043127 - MLT1J LTR MaLR -374 137 11 741 225 25 0 chr6 87372208 87372368 -95042874 - MIR SINE MIR -20 242 79 725 275 0 0 chr6 87372777 87372937 -95042305 - MER5A DNA MER1_type -14 175 16 194 293 0 93 chr6 87373107 87373182 -95042060 - L2 LINE L2 -1387 1927 1860 342 309 66 50 chr6 87373638 87373819 -95041423 + L2 LINE L2 2566 2749 -565 7523 28 2 10 chr6 87373835 87375124 -95040118 + L1PA3 LINE L1 4875 6155 0 2209 128 0 0 chr6 87375683 87375989 -95039253 - AluSx SINE Alu -6 306 1 27 73 0 0 chr6 87376518 87376573 -95038669 + AT_rich Low_complexity Low_complexity 1 55 0 557 268 98 41 chr6 87378842 87379036 -95036206 - MIR SINE MIR -51 211 7 287 381 84 32 chr6 87379189 87379499 -95035743 + L2 LINE L2 2919 3244 -28 24 96 0 0 chr6 87379841 87379914 -95035328 + AT_rich Low_complexity Low_complexity 1 73 0 227 222 99 62 chr6 87380655 87380736 -95034506 + MIR SINE MIR 67 150 -112 319 235 15 0 chr6 87382581 87382649 -95032593 - L2 LINE L2 0 3313 3245 2407 72 0 41 chr6 87382662 87382981 -95032261 - AluSp SINE Alu -7 306 1 207 314 38 29 chr6 87383208 87383313 -95031929 - L2 LINE L2 -5 3267 3162 183 212 0 0 chr6 87383444 87383477 -95031765 - L2 LINE L2 -3 3269 3237 714 304 31 55 chr6 87383746 87384072 -95031170 - LTR16A LTR ERVL -109 341 24 1014 43 7 22 chr6 87384368 87384507 -95030735 + L1PA5 LINE L1 6016 6152 -2 1937 129 34 3 chr6 87385365 87385659 -95029583 - AluSx SINE Alu -9 303 1 25 51 0 0 chr6 87386461 87386500 -95028742 + AT_rich Low_complexity Low_complexity 1 39 0 3484 245 123 63 chr6 87386762 87387772 -95027470 + L2 LINE L2 562 1509 -1804 2237 96 3 0 chr6 87387772 87388064 -95027178 + AluSx SINE Alu 2 294 -18 3484 245 123 63 chr6 87388064 87388133 -95027109 + L2 LINE L2 1509 1572 -1741 1660 131 84 18 chr6 87388133 87388407 -95026835 - AluJb SINE Alu -20 292 1 3484 245 123 63 chr6 87388407 87389862 -95025380 + L2 LINE L2 1572 3313 0 732 305 65 23 chr6 87391060 87391444 -95023798 - L1ME LINE L1 -5654 416 17 1512 247 47 50 chr6 87391461 87391576 -95023666 - L1M4 LINE L1 -3184 2962 2848 2324 98 0 0 chr6 87391576 87391873 -95023369 + AluSq SINE Alu 1 297 -16 1512 247 47 50 chr6 87391873 87392590 -95022652 - L1M4 LINE L1 -3298 2848 2133 785 176 0 0 chr6 87392619 87392744 -95022498 - AluSq/x SINE Alu -188 125 1 1666 181 13 19 chr6 87393204 87393513 -95021729 + AluJo SINE Alu 5 311 -1 207 102 41 20 chr6 87393517 87393566 -95021676 + GA-rich Low_complexity Low_complexity 2 51 0 368 95 0 32 chr6 87393606 87393669 -95021573 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 322 185 0 28 chr6 87393733 87393841 -95021401 + GA-rich Low_complexity Low_complexity 3 107 0 255 175 0 0 chr6 87393903 87393960 -95021282 + GA-rich Low_complexity Low_complexity 4 60 0 234 128 0 0 chr6 87393983 87394022 -95021220 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 225 311 27 0 chr6 87395184 87395258 -95019984 + T-rich Low_complexity Low_complexity 2 77 0 532 292 78 16 chr6 87395638 87395830 -95019412 + MIR SINE MIR 11 214 -48 21 0 0 0 chr6 87396308 87396329 -95018913 + AT_rich Low_complexity Low_complexity 1 21 0 183 182 0 0 chr6 87396852 87396885 -95018357 + L2 LINE L2 3272 3304 -9 308 324 7 50 chr6 87396936 87397075 -95018167 + MER94 DNA DNA 1 133 -1 975 228 22 26 chr6 87397174 87397442 -95017800 - L1ME2 LINE L1 -115 6049 5783 239 151 0 57 chr6 87397875 87397928 -95017314 - L1ME2 LINE L1 -365 5805 5756 281 234 0 0 chr6 87397964 87398028 -95017214 - L1ME2 LINE L1 -588 5576 5513 731 268 16 0 chr6 87398662 87398845 -95016397 + MER5A DNA MER1_type 4 189 0 1139 219 8 13 chr6 87399571 87399808 -95015434 + MER8 DNA MER2_type 4 239 0 1500 260 67 23 chr6 87400202 87400637 -95014605 - MLT1J LTR MaLR -57 454 1 447 288 65 44 chr6 87400712 87400941 -95014301 + L1MC4a LINE L1 5609 5842 -1966 675 298 29 45 chr6 87400943 87401188 -95014054 - MLT2F LTR ERVL -1 662 422 446 303 123 57 chr6 87401499 87402044 -95013198 + L1MEd LINE L1 98 678 -5441 2010 150 6 10 chr6 87402145 87402458 -95012784 + AluJb SINE Alu 1 312 0 252 246 121 46 chr6 87402493 87402733 -95012509 + L1MEd LINE L1 869 1126 -4993 190 211 19 19 chr6 87403715 87403767 -95011475 + MIR SINE MIR 152 203 -59 605 230 12 66 chr6 87403797 87403994 -95011248 - MIR SINE MIR -20 242 58 311 296 8 64 chr6 87403978 87404103 -95011139 - MIR SINE MIR -143 119 2 * 1014 169 4 106 chr6 87404229 87404466 -95010776 - AluJb SINE Alu -16 296 84 1722 182 46 0 chr6 87404502 87404831 -95010411 - MER2 DNA MER2_type 0 344 1 268 203 0 72 chr6 87405023 87405092 -95010150 - MLT1J LTR MaLR -347 164 101 397 215 58 50 chr6 87406149 87406270 -95008972 - HAL1 LINE L1 -23 2484 2363 398 146 18 0 chr6 87406281 87406365 -95008877 + MSTB2 LTR MaLR 339 457 0 1528 262 98 15 chr6 87406600 87407069 -95008173 - MLT1H LTR MaLR -7 542 35 3872 155 21 1 chr6 87408627 87409291 -95005951 - L1MC1 LINE L1 0 6333 5657 16811 141 63 11 chr6 87409308 87412352 -95002890 - L1PBa LINE L1 -3656 3206 2 331 192 64 26 chr6 87412434 87412512 -95002730 + MIR SINE MIR 182 262 0 4857 109 17 43 chr6 87412720 87413602 -95001640 + L1PA15 LINE L1 5180 6037 -128 1388 163 4 16 chr6 87413603 87413848 -95001394 + AluJb SINE Alu 47 288 -24 902 115 0 0 chr6 87413876 87414015 -95001227 + L1PA15 LINE L1 6026 6164 -1 752 274 79 11 chr6 87414266 87414543 -95000699 - Tigger8 DNA MER2_type -16 650 355 413 314 85 42 chr6 87414578 87414861 -95000381 - Tigger8 DNA MER2_type -369 297 3 24 53 0 0 chr6 87415001 87415039 -95000203 + AT_rich Low_complexity Low_complexity 1 38 0 411 273 65 0 chr6 87415675 87415829 -94999413 + MIR SINE MIR 96 259 -3 313 224 159 9 chr6 87416245 87416352 -94998890 + LTR33A LTR ERVL 341 463 -60 22 35 0 0 chr6 87416663 87416692 -94998550 + AT_rich Low_complexity Low_complexity 1 29 0 298 310 63 28 chr6 87416726 87416868 -94998374 + HsTC2 DNA Tc2 1 147 -1751 1437 217 75 66 chr6 87416884 87417427 -94997815 + HsTC2 DNA Tc2 1311 1858 -40 2117 124 0 10 chr6 87418025 87418323 -94996919 - AluSx SINE Alu -16 296 2 2257 106 0 3 chr6 87418639 87418941 -94996301 + AluSx SINE Alu 1 301 -11 1739 203 75 33 chr6 87419451 87419933 -94995309 - L1MC4a LINE L1 0 7808 7307 22 56 0 0 chr6 87420283 87420319 -94994923 + AT_rich Low_complexity Low_complexity 1 36 0 211 351 87 63 chr6 87421495 87421828 -94993414 + L2 LINE L2 2932 3272 0 411 173 0 0 chr6 87423103 87423184 -94992058 + (TCCA)n Simple_repeat Simple_repeat 4 84 0 827 222 12 0 chr6 87423254 87423425 -94991817 - MER58B DNA MER1_type -2 339 167 512 248 41 14 chr6 87423974 87424119 -94991123 - LTR67 LTR ERVL -13 544 396 612 310 21 63 chr6 87424175 87424459 -94990783 - LTR67 LTR ERVL -285 272 1 2122 113 26 7 chr6 87424682 87424984 -94990258 + AluSx SINE Alu 1 308 -4 2178 97 31 3 chr6 87424989 87425279 -94989963 + AluSx SINE Alu 14 311 -1 852 184 42 14 chr6 87425691 87425903 -94989339 - L1MC3 LINE L1 -21 7764 7547 856 149 26 62 chr6 87426356 87426551 -94988691 - L1MA9 LINE L1 0 6312 6125 284 155 69 0 chr6 87426554 87426612 -94988630 - L1MA9 LINE L1 -225 6087 6026 228 200 0 0 chr6 87427879 87427929 -94987313 + CT-rich Low_complexity Low_complexity 3 52 0 396 0 0 0 chr6 87430978 87431022 -94984220 + (TG)n Simple_repeat Simple_repeat 2 45 0 350 306 113 16 chr6 87431528 87431714 -94983528 + L1ME3A LINE L1 805 1008 -5388 252 143 0 0 chr6 87431728 87431770 -94983472 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 298 117 50 chr6 87431771 87432053 -94983189 + L1ME3A LINE L1 987 1287 -4918 562 274 58 24 chr6 87432115 87432323 -94982919 + L1ME3A LINE L1 1548 1762 -4634 2294 284 146 27 chr6 87432525 87434438 -94980804 + L1ME3A LINE L1 2029 4146 -2069 798 294 114 24 chr6 87434563 87435100 -94980142 + L1ME3A LINE L1 4741 5325 -890 1800 241 116 17 chr6 87435123 87435769 -94979473 + L1ME3A LINE L1 5521 6230 -9 741 258 164 33 chr6 87436479 87436844 -94978398 + L2 LINE L2 2449 2861 -453 5289 91 121 41 chr6 87436893 87437976 -94977266 - MER11A LTR ERVK 0 1266 1 453 337 127 19 chr6 87437984 87438251 -94976991 + L2 LINE L2 3009 3304 -9 25 51 0 0 chr6 87438845 87438884 -94976358 + AT_rich Low_complexity Low_complexity 1 39 0 204 279 0 29 chr6 87438903 87438971 -94976271 + T-rich Low_complexity Low_complexity 5 70 0 468 217 19 19 chr6 87440633 87440739 -94974503 + L2 LINE L2 3199 3304 -9 2135 90 10 3 chr6 87440936 87441226 -94974016 - AluSc SINE Alu -17 292 1 198 282 165 12 chr6 87441349 87441434 -94973808 - MIR SINE MIR -64 144 47 21 0 0 0 chr6 87441674 87441695 -94973547 + AT_rich Low_complexity Low_complexity 1 21 0 2117 121 19 0 chr6 87442151 87442458 -94972784 + AluSq SINE Alu 1 313 0 400 318 16 16 chr6 87443424 87443550 -94971692 - LTR67 LTR ERVL -392 165 40 203 321 0 0 chr6 87443586 87443639 -94971603 + (CA)n Simple_repeat Simple_repeat 1 53 0 375 210 42 63 chr6 87443872 87444015 -94971227 - HAL1b LINE L1 -457 891 752 2048 126 7 7 chr6 87444389 87444691 -94970551 - AluSx SINE Alu -8 304 3 871 301 96 34 chr6 87444755 87445423 -94969819 - HAL1 LINE L1 -694 1813 1105 2232 120 7 0 chr6 87445910 87446219 -94969023 - AluSq SINE Alu -2 311 1 369 284 107 14 chr6 87446656 87446871 -94968371 - L1M4 LINE L1 -1823 4323 4089 24 0 0 0 chr6 87447124 87447148 -94968094 + AT_rich Low_complexity Low_complexity 1 24 0 1410 188 0 14 chr6 87447155 87447437 -94967805 - L1PA16 LINE L1 -16 6150 5873 1806 167 3 26 chr6 87449574 87449886 -94965356 - AluJb SINE Alu -7 305 1 702 307 191 25 chr6 87450024 87450496 -94964746 - L3 LINE CR1 -31 1546 997 208 270 162 0 chr6 87450506 87450580 -94964662 + L3 LINE CR1 1412 1497 -80 253 268 89 16 chr6 87452050 87452173 -94963069 + MIR SINE MIR 15 146 -116 1062 275 115 18 chr6 87454262 87454705 -94960537 - L2 LINE L2 -5 3308 2823 270 339 56 14 chr6 87454708 87455065 -94960177 + L1M4 LINE L1 4074 4445 -1701 2699 39 0 0 chr6 87455213 87455524 -94959718 - AluY SINE Alu 0 311 1 24 32 0 0 chr6 87455542 87455573 -94959669 + AT_rich Low_complexity Low_complexity 1 31 0 529 190 20 10 chr6 87455688 87455788 -94959454 - MER58B DNA MER1_type -2 339 239 1428 209 80 35 chr6 87455790 87456164 -94959078 - MSTD LTR MaLR 0 396 6 613 282 208 19 chr6 87456250 87456764 -94958478 + L1M4 LINE L1 4793 5403 -743 374 206 33 0 chr6 87456779 87456871 -94958371 + MIR SINE MIR 132 226 -36 2123 108 0 0 chr6 87456871 87457150 -94958092 + AluSg SINE Alu 1 279 -31 209 136 0 23 chr6 87457746 87457790 -94957452 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 307 183 63 8 chr6 87457855 87457981 -94957261 + (TA)n Simple_repeat Simple_repeat 1 133 0 201 240 20 0 chr6 87457959 87458009 -94957233 + (TG)n Simple_repeat Simple_repeat 2 52 0 * 2090 113 3 77 chr6 87459051 87459415 -94955827 - MER1B DNA MER1_type 0 337 1 4209 148 54 10 chr6 87459717 87460495 -94954747 + L1MA4 LINE L1 5488 6299 -1 259 261 85 46 chr6 87460517 87460647 -94954595 - MIR SINE MIR -34 228 94 195 305 0 34 chr6 87460722 87460781 -94954461 - MIR SINE MIR -129 79 23 780 224 161 0 chr6 87461728 87461933 -94953309 - MIR SINE MIR -21 241 4 22 0 0 0 chr6 87462098 87462120 -94953122 + AT_rich Low_complexity Low_complexity 1 22 0 467 340 127 35 chr6 87462136 87462569 -94952673 + L3 LINE CR1 1103 1575 -2 617 278 123 19 chr6 87462712 87462924 -94952318 - MIR SINE MIR -16 246 13 201 156 0 0 chr6 87463223 87463255 -94951987 + CT-rich Low_complexity Low_complexity 1 32 0 2031 115 13 13 chr6 87463280 87463585 -94951657 - AluSx SINE Alu -7 305 1 630 209 8 0 chr6 87463613 87463742 -94951500 - MER57A LTR ERV1 -1 402 273 29 0 0 0 chr6 87463758 87463787 -94951455 + AT_rich Low_complexity Low_complexity 1 29 0 10359 46 2 46 chr6 87463787 87465981 -94949261 - L1PA6 LINE L1 0 6154 4024 5018 107 2 43 chr6 87465981 87466801 -94948441 - L1P LINE L1 -4541 1605 819 471 263 52 11 chr6 87466803 87467391 -94947851 - L1ME LINE L1 -475 5695 4998 270 297 61 40 chr6 87467489 87467637 -94947605 - L1ME LINE L1 -1300 4846 4696 282 116 0 0 chr6 87467729 87467772 -94947470 + (CA)n Simple_repeat Simple_repeat 2 44 0 374 246 37 0 chr6 87467778 87467912 -94947330 - L1ME LINE L1 -1542 4604 4466 1635 203 0 10 chr6 87468731 87469022 -94946220 - AluJb SINE Alu -24 288 1 198 103 0 0 chr6 87469415 87469444 -94945798 + (TG)n Simple_repeat Simple_repeat 2 30 0 201 156 0 44 chr6 87470132 87470177 -94945065 - L2 LINE L2 -4 3309 3267 * 477 261 189 33 chr6 87470155 87470335 -94944907 + MIR SINE MIR 22 229 -33 197 317 29 39 chr6 87470773 87470877 -94944365 + L3 LINE CR1 993 1095 -482 1635 184 3 3 chr6 87470980 87471263 -94943979 + AluJb SINE Alu 1 283 -29 198 220 0 0 chr6 87472005 87472064 -94943178 + (CA)n Simple_repeat Simple_repeat 2 60 0 446 49 16 0 chr6 87474073 87474134 -94941108 + (TG)n Simple_repeat Simple_repeat 1 62 0 796 150 13 78 chr6 87474272 87474425 -94940817 - MER20 DNA MER1_type -45 174 32 252 321 0 24 chr6 87475134 87475218 -94940024 + L2 LINE L2 3177 3258 -55 269 238 206 7 chr6 87475967 87476101 -94939141 + MIR SINE MIR 56 214 -48 188 356 46 11 chr6 87476205 87476292 -94938950 + MIR SINE MIR 41 130 -78 697 309 39 9 chr6 87477173 87477406 -94937836 - MIR SINE MIR 0 262 23 23 0 0 0 chr6 87477855 87477878 -94937364 + AT_rich Low_complexity Low_complexity 1 23 0 183 218 0 0 chr6 87478120 87478175 -94937067 + (CAT)n Simple_repeat Simple_repeat 3 57 0 27 49 0 0 chr6 87479071 87479112 -94936130 + AT_rich Low_complexity Low_complexity 1 41 0 221 149 45 30 chr6 87479356 87479423 -94935819 + T-rich Low_complexity Low_complexity 5 72 0 1652 189 3 22 chr6 87479602 87479915 -94935327 + AluJo SINE Alu 3 309 -3 695 205 37 20 chr6 87479922 87480085 -94935157 + MLT1C LTR MaLR 251 343 -53 234 62 0 0 chr6 87480085 87480117 -94935125 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 2131 137 23 9 chr6 87481389 87481732 -94933510 - MER7A DNA MER2_type 0 346 1 233 200 221 42 chr6 87482306 87482401 -94932841 - L2 LINE L2 -9 3304 3193 234 254 21 0 chr6 87482506 87482648 -94932594 + (TA)n Simple_repeat Simple_repeat 1 145 0 1624 201 49 37 chr6 87482703 87483111 -94932131 - MLT2B3 LTR ERVL -7 547 135 28 29 0 0 chr6 87483162 87483197 -94932045 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 87488227 87488255 -94926987 + AT_rich Low_complexity Low_complexity 1 28 0 325 119 34 34 chr6 87488346 87488405 -94926837 + Alu SINE Alu 236 294 -8 4595 178 20 1 chr6 87490014 87490885 -94924357 + L1MB3 LINE L1 5266 6147 -36 207 357 0 0 chr6 87494259 87494329 -94920913 - MIR SINE MIR -5 257 188 26 82 0 0 chr6 87494916 87494977 -94920265 + AT_rich Low_complexity Low_complexity 1 61 0 215 279 73 0 chr6 87495520 87495588 -94919654 + MIR SINE MIR 164 236 -26 281 302 23 31 chr6 87496447 87496576 -94918666 - L1M1 LINE L1 -476 5826 5699 619 101 0 0 chr6 87496930 87497019 -94918223 + AluSg/x SINE Alu 212 300 -10 30 45 0 0 chr6 87498856 87498900 -94916342 + AT_rich Low_complexity Low_complexity 1 44 0 180 419 0 0 chr6 87499673 87499747 -94915495 - MIR3 SINE MIR -127 81 8 252 262 140 9 chr6 87500362 87500469 -94914773 - MIR3 SINE MIR -48 160 40 21 0 0 0 chr6 87501557 87501578 -94913664 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 87502587 87502608 -94912634 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 87502845 87502867 -94912375 + AT_rich Low_complexity Low_complexity 1 22 0 1982 89 0 0 chr6 87503753 87504010 -94911232 - AluSg1 SINE Alu -19 290 34 1991 102 0 28 chr6 87504312 87504638 -94910604 - AluSx SINE Alu 0 322 5 290 332 101 25 chr6 87504701 87504900 -94910342 + L2 LINE L2 2694 2907 -407 212 314 66 33 chr6 87505508 87505629 -94909613 - L2 LINE L2 -568 2746 2622 404 241 0 0 chr6 87505629 87505708 -94909534 + Tigger3(Golem) DNA MER2_type 2 80 -2949 541 191 48 0 chr6 87505840 87505945 -94909297 + Tigger3(Golem) DNA MER2_type 2920 3029 0 346 306 126 78 chr6 87505953 87506206 -94909036 - L2 LINE L2 -700 2614 2374 228 67 0 0 chr6 87506206 87506236 -94909006 + (TG)n Simple_repeat Simple_repeat 2 31 0 346 306 126 78 chr6 87506236 87506824 -94908418 - L2 LINE L2 -940 2374 1733 233 248 32 8 chr6 87506889 87506964 -94908278 + CT-rich Low_complexity Low_complexity 1 62 0 310 333 138 22 chr6 87507363 87507639 -94907603 + L1ME LINE L1 5368 5675 -446 216 111 0 0 chr6 87511122 87511158 -94904084 + (TG)n Simple_repeat Simple_repeat 2 37 0 1733 147 82 17 chr6 87512676 87513095 -94902147 - MER61D LTR ERV1 0 501 1 185 128 0 26 chr6 87513927 87513966 -94901276 + (TA)n Simple_repeat Simple_repeat 2 39 0 805 340 19 38 chr6 87514601 87515028 -94900214 + L1PA13 LINE L1 789 1207 -6367 285 333 18 42 chr6 87515653 87515821 -94899421 + L1PA13 LINE L1 2181 2344 -5237 3927 90 9 16 chr6 87515823 87516381 -94898861 - MER41A LTR ERV1 0 554 1 7303 100 30 7 chr6 87516381 87517429 -94897813 - MER41A-int LTR ERV1 -2 5944 4873 2410 105 37 6 chr6 87517429 87517782 -94897460 - THE1B LTR MaLR 0 364 1 10899 108 21 0 chr6 87517782 87519319 -94895923 - THE1B-int LTR MaLR 0 1580 12 3469 119 83 28 chr6 87519319 87520384 -94894858 + MER11A LTR ERVK 1 1236 0 2397 143 3 6 chr6 87520401 87520766 -94894476 - THE1B LTR MaLR 0 364 1 996 78 30 48 chr6 87520766 87520933 -94894309 - MER41A-int LTR ERV1 -1069 4877 4714 1383 113 0 0 chr6 87520933 87521119 -94894123 - THE1B LTR MaLR -173 191 6 6375 146 38 37 chr6 87521133 87523230 -94892012 - MER41A-int LTR ERV1 -1124 4933 2606 835 148 17 57 chr6 87523226 87523298 -94891944 - MER41A-int LTR ERV1 -4156 2107 2034 * 1880 163 14 0 chr6 87523298 87523592 -94891650 - AluSx SINE Alu -11 301 4 835 148 17 57 chr6 87523592 87523695 -94891547 - MER41A-int LTR ERV1 -4229 2034 1939 815 171 103 11 chr6 87523683 87523858 -94891384 - MER41A-int LTR ERV1 -4377 840 650 * 4499 122 16 19 chr6 87523861 87524551 -94890691 - MER41A-int LTR ERV1 -5258 688 1 271 158 342 0 chr6 87524560 87524636 -94890606 - MER41A-int LTR ERV1 -5844 102 1 799 70 44 9 chr6 87524636 87524750 -94890492 - MER41A LTR ERV1 0 554 437 7988 239 36 32 chr6 87524752 87525240 -94890002 + L1P LINE L1 1841 2326 -3820 1545 189 14 17 chr6 87525240 87525536 -94889706 - AluJb SINE Alu -15 297 3 7988 239 36 32 chr6 87525536 87527537 -94887705 + L1P LINE L1 2326 4340 -1806 22 0 0 0 chr6 87528377 87528399 -94886843 + AT_rich Low_complexity Low_complexity 1 22 0 949 312 142 10 chr6 87529573 87530249 -94884993 + L1M4 LINE L1 3403 4167 -1979 28 71 0 0 chr6 87530590 87530646 -94884596 + AT_rich Low_complexity Low_complexity 1 56 0 266 214 92 20 chr6 87530740 87530838 -94884404 + L1M4 LINE L1 4614 4718 -1428 930 250 105 0 chr6 87531091 87531319 -94883923 + MIR SINE MIR 11 262 0 285 301 141 40 chr6 87532359 87532558 -94882684 + MIR SINE MIR 40 258 -4 24 32 0 0 chr6 87533060 87533091 -94882151 + AT_rich Low_complexity Low_complexity 1 31 0 31 44 0 0 chr6 87533234 87533279 -94881963 + AT_rich Low_complexity Low_complexity 1 45 0 364 266 118 13 chr6 87533327 87533556 -94881686 - L1ME4a LINE L1 -135 5986 5734 2274 57 47 3 chr6 87533769 87534067 -94881175 - AluY SINE Alu 0 311 1 2325 104 0 3 chr6 87534242 87534551 -94880691 - AluSq SINE Alu -5 308 1 23 0 0 0 chr6 87534664 87534687 -94880555 + AT_rich Low_complexity Low_complexity 1 23 0 282 29 0 0 chr6 87534766 87534801 -94880441 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2323 118 35 3 chr6 87534901 87535273 -94879969 - L1PA15 LINE L1 -13 6152 5769 * 14165 155 19 23 chr6 87535270 87536200 -94879042 - L1PA11 LINE L1 0 7612 6680 1989 109 104 27 chr6 87536200 87536538 -94878704 + THE1B LTR MaLR 1 364 0 14165 155 19 23 chr6 87536538 87538540 -94876702 - L1PA11 LINE L1 -932 6680 4672 180 0 0 0 chr6 87538540 87538560 -94876682 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2359 77 0 0 chr6 87538562 87538847 -94876395 - AluSx SINE Alu -27 285 1 14165 155 19 23 chr6 87538847 87539462 -94875780 - L1PA11 LINE L1 -2941 4671 4067 3558 232 33 16 chr6 87539468 87540776 -94874466 - L1PA11 LINE L1 -6227 1354 4 837 229 0 0 chr6 87540803 87540969 -94874273 - FRAM SINE Alu 0 166 1 332 289 58 8 chr6 87540971 87541092 -94874150 + MIR SINE MIR 123 249 -13 181 275 0 62 chr6 87541217 87541297 -94873945 + L3 LINE CR1 1499 1573 -4 1706 201 41 56 chr6 87542449 87542912 -94872330 - MLT1D LTR MaLR -49 456 1 208 222 19 0 chr6 87543491 87543518 -94871724 + (TATG)n Simple_repeat Simple_repeat 4 29 -29 1584 179 70 33 chr6 87543518 87543591 -94871651 - MER2 DNA MER2_type 0 344 275 2278 113 7 7 chr6 87543591 87543900 -94871342 + AluSx SINE Alu 1 309 -3 1584 179 70 33 chr6 87543900 87544156 -94871086 - MER2 DNA MER2_type -69 275 3 208 222 19 0 chr6 87544156 87544182 -94871060 + (TATG)n Simple_repeat Simple_repeat 29 58 0 271 349 157 0 chr6 87544435 87544601 -94870641 + MIR SINE MIR 56 247 -15 2464 84 0 3 chr6 87547412 87547722 -94867520 - AluSg SINE Alu 0 310 2 276 100 0 0 chr6 87548060 87548100 -94867142 + (T)n Simple_repeat Simple_repeat 1 40 0 576 290 88 13 chr6 87548173 87548411 -94866831 + MIR SINE MIR 3 258 -4 2389 49 0 0 chr6 87548974 87549258 -94865984 - AluY SINE Alu -27 284 1 649 253 48 0 chr6 87549383 87549549 -94865693 + MER5B DNA MER1_type 4 177 -1 254 263 79 9 chr6 87549567 87549681 -94865561 - L2 LINE L2 -1461 1853 1732 2183 167 21 25 chr6 87550963 87551400 -94863842 + L1MC3 LINE L1 7349 7783 -2 296 255 83 99 chr6 87551668 87551792 -94863450 - MIR SINE MIR -28 234 111 1900 125 79 0 chr6 87551792 87552071 -94863171 + AluSx SINE Alu 1 301 -11 296 255 83 99 chr6 87552071 87552165 -94863077 - MIR SINE MIR -151 111 17 1834 133 103 6 chr6 87552303 87552634 -94862608 - MER47A DNA MER2_type 0 366 4 781 143 8 0 chr6 87552634 87552753 -94862489 - THE1C LTR MaLR -3 372 253 246 67 17 83 chr6 87553065 87553125 -94862117 + (TCCCC)n Simple_repeat Simple_repeat 3 58 0 199 175 0 50 chr6 87553376 87553416 -94861826 - L2 LINE L2 -19 3253 3216 231 208 38 0 chr6 87555617 87555670 -94859572 - L2 LINE L2 0 3272 3218 272 233 244 0 chr6 87558443 87558533 -94856709 + MIR SINE MIR 81 192 -70 22 0 0 0 chr6 87559010 87559032 -94856210 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr6 87560067 87560102 -94855140 + AT_rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chr6 87560418 87560443 -94854799 + (A)n Simple_repeat Simple_repeat 1 25 0 23 78 0 0 chr6 87561082 87561133 -94854109 + AT_rich Low_complexity Low_complexity 1 51 0 28 71 0 0 chr6 87561321 87561377 -94853865 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr6 87562621 87562642 -94852600 + AT_rich Low_complexity Low_complexity 1 21 0 33 56 0 0 chr6 87562773 87562827 -94852415 + AT_rich Low_complexity Low_complexity 1 54 0 497 281 146 5 chr6 87565080 87565272 -94849970 + MIR SINE MIR 8 226 -36 246 32 0 0 chr6 87565960 87565991 -94849251 + (TG)n Simple_repeat Simple_repeat 2 32 0 849 160 0 0 chr6 87567627 87567758 -94847484 + AluJ SINE Alu 3 133 -169 241 185 31 0 chr6 87567762 87567827 -94847415 + GA-rich Low_complexity Low_complexity 3 69 0 795 189 20 7 chr6 87567835 87567983 -94847259 + AluJ SINE Alu 141 290 -22 211 360 21 89 chr6 87568078 87568414 -94846828 - L2 LINE L2 -91 3181 2869 333 269 103 0 chr6 87568434 87568579 -94846663 - L1ME4a LINE L1 -11 6110 5951 1951 153 0 13 chr6 87569183 87569491 -94845751 - AluSx SINE Alu -8 304 1 2328 88 0 3 chr6 87569535 87569831 -94845411 - AluSc SINE Alu -14 295 1 365 318 171 27 chr6 87572261 87572519 -94842723 + L3 LINE CR1 632 926 -651 346 254 58 75 chr6 87573555 87573728 -94841514 + MLT1K LTR MaLR 2 171 -417 318 241 60 0 chr6 87574506 87574589 -94840653 - L2 LINE L2 -13 3259 3172 262 255 80 25 chr6 87574665 87574865 -94840377 + L1M4 LINE L1 2147 2357 -3789 320 277 40 61 chr6 87576013 87576161 -94839081 + L2 LINE L2 3164 3308 -5 310 247 49 0 chr6 87576704 87576785 -94838457 + MLT1K LTR MaLR 165 249 -339 1812 148 3 70 chr6 87576820 87576996 -94838246 - AluJb SINE Alu -3 309 164 2536 60 3 10 chr6 87576996 87577310 -94837932 - AluSp SINE Alu -1 312 1 1812 148 3 70 chr6 87577310 87577464 -94837778 - AluJb SINE Alu -148 164 1 244 150 25 0 chr6 87577733 87577773 -94837469 + MLT1L LTR MaLR 569 609 -6 4141 182 45 23 chr6 87578095 87578759 -94836483 - L1PB4 LINE L1 -1 6155 5507 2366 93 0 3 chr6 87578759 87579061 -94836181 + AluSc SINE Alu 1 301 -8 4141 182 45 23 chr6 87579061 87579402 -94835840 - L1PB4 LINE L1 -649 5507 5175 264 30 0 0 chr6 87579402 87579435 -94835807 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1950 139 0 4 chr6 87579435 87579715 -94835527 - AluSx SINE Alu -33 279 1 4141 182 45 23 chr6 87579715 87580353 -94834889 - L1PB4 LINE L1 -980 5176 4482 1965 114 0 0 chr6 87580353 87580616 -94834626 + AluSx SINE Alu 50 312 0 287 307 14 14 chr6 87581587 87581727 -94833515 + L1ME4a LINE L1 5776 5915 -206 234 237 0 0 chr6 87582073 87582149 -94833093 + CT-rich Low_complexity Low_complexity 2 77 0 1677 237 78 18 chr6 87582256 87582746 -94832496 - LTR33 LTR ERVL -2 519 1 821 245 164 12 chr6 87582952 87583275 -94831967 - HAL1 LINE L1 -607 1900 1529 332 205 238 16 chr6 87583324 87583446 -94831796 - HAL1 LINE L1 -1361 1146 998 229 232 18 0 chr6 87583449 87583505 -94831737 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 350 222 160 42 chr6 87583514 87583658 -94831584 - HAL1 LINE L1 -1511 996 836 1885 208 32 0 chr6 87583672 87584051 -94831191 + L1MB5 LINE L1 5750 6146 -28 317 238 69 0 chr6 87584642 87584743 -94830499 - HAL1 LINE L1 -2361 146 39 2227 94 10 0 chr6 87584769 87585076 -94830166 - AluSg SINE Alu 0 310 1 2337 93 6 6 chr6 87585910 87586222 -94829020 + AluSx SINE Alu 1 312 0 22 35 0 0 chr6 87587168 87587197 -94828045 + AT_rich Low_complexity Low_complexity 1 29 0 396 268 32 19 chr6 87588930 87589087 -94826155 - MER113 DNA MER1_type? -360 161 3 5199 106 117 26 chr6 87590004 87591076 -94824166 - MER11A LTR ERVK 0 1266 1 3874 203 111 16 chr6 87592275 87593225 -94822017 - MER45B DNA AcHobo 0 1040 1 2217 125 0 6 chr6 87593917 87594229 -94821013 + AluSx SINE Alu 3 312 0 24 0 0 0 chr6 87595052 87595076 -94820166 + AT_rich Low_complexity Low_complexity 1 24 0 2566 87 8 11 chr6 87595594 87595961 -94819281 - L1PB1 LINE L1 -4 6863 6498 404 133 0 13 chr6 87595963 87596038 -94819204 + (TG)n Simple_repeat Simple_repeat 2 75 0 9982 185 18 8 chr6 87596039 87599164 -94816078 - L1PB1 LINE L1 -360 6507 2892 8611 86 65 1 chr6 87599790 87601081 -94814161 - L1PB1 LINE L1 -3955 2908 1535 3447 128 16 24 chr6 87601071 87601650 -94813592 - L1PB1 LINE L1 -5656 1207 634 * 1178 163 20 0 chr6 87601650 87601846 -94813396 - L1PB1 LINE L1 -6663 200 1 3417 219 51 16 chr6 87602037 87602227 -94813015 - L1M4 LINE L1 -795 5351 5169 2044 136 7 10 chr6 87602227 87602528 -94812714 - AluSx SINE Alu -12 300 1 3417 219 51 16 chr6 87602528 87603303 -94811939 - L1M4 LINE L1 -977 5169 4352 * 3819 149 37 47 chr6 87603288 87603630 -94811612 - L1PB4 LINE L1 -2 6154 5810 204 40 0 0 chr6 87603630 87603655 -94811587 + (TG)n Simple_repeat Simple_repeat 2 26 0 3819 149 37 47 chr6 87603655 87604103 -94811139 - L1PB4 LINE L1 -346 5810 5372 8198 213 15 9 chr6 87604110 87606003 -94809239 + L1PB4 LINE L1 3472 5375 -771 912 205 29 0 chr6 87606003 87606208 -94809034 - L1M4 LINE L1 -1765 4381 4171 22 35 0 0 chr6 87606851 87606880 -94808362 + AT_rich Low_complexity Low_complexity 1 29 0 206 277 0 0 chr6 87607518 87607565 -94807677 + L3b LINE CR1 1536 1582 -1 439 330 69 5 chr6 87608108 87608311 -94806931 - MLT1I LTR MaLR 0 409 194 247 277 80 0 chr6 87608724 87608836 -94806406 - L1 LINE L1 -1101 5045 4925 3001 64 35 60 chr6 87609241 87609535 -94805707 + MLT2A1 LTR ERVL 2 283 -161 2154 130 0 0 chr6 87609535 87609843 -94805399 - AluSg SINE Alu -2 308 1 3001 64 35 60 chr6 87609843 87610002 -94805240 + MLT2A1 LTR ERVL 283 444 0 10696 71 19 12 chr6 87610002 87611411 -94803831 + HERVL LTR ERVL 1 1418 -4236 1245 166 10 1 chr6 87611411 87611643 -94803599 + L1PA13 LINE L1 5655 5887 -275 34078 69 7 4 chr6 87611643 87615950 -94799292 + HERVL-A1 LTR ERVL 1334 5654 0 2540 102 44 64 chr6 87615950 87616364 -94798878 + MLT2A1 LTR ERVL 1 407 -37 189 0 0 0 chr6 87616364 87616385 -94798857 + (TG)n Simple_repeat Simple_repeat 2 22 0 2540 102 44 64 chr6 87616385 87616423 -94798819 + MLT2A1 LTR ERVL 407 444 0 1167 246 139 39 chr6 87616428 87616887 -94798355 + MLT1D LTR MaLR 1 505 0 1955 142 0 4 chr6 87617171 87617478 -94797764 - AluSx SINE Alu 0 308 3 21 0 0 0 chr6 87617547 87617568 -94797674 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr6 87617904 87617942 -94797300 + AT_rich Low_complexity Low_complexity 1 38 0 1608 240 193 68 chr6 87618010 87618471 -94796771 - HAL1 LINE L1 -97 2410 2008 1648 195 30 28 chr6 87618471 87618835 -94796407 + MLT1A1 LTR MaLR 1 365 0 1608 240 193 68 chr6 87618835 87619948 -94795294 - HAL1 LINE L1 -499 2008 639 2253 138 22 8 chr6 87619948 87620318 -94794924 + THE1C LTR MaLR 1 375 0 7661 117 162 46 chr6 87620318 87621729 -94793513 + THE1C-int LTR MaLR 1 1574 -6 2315 147 11 8 chr6 87621734 87622108 -94793134 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr6 87622282 87622303 -94792939 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr6 87622584 87622607 -94792635 + (TG)n Simple_repeat Simple_repeat 2 24 0 1957 125 18 0 chr6 87622787 87623104 -94792138 + AluSx SINE Alu 1 322 0 10708 202 17 6 chr6 87623110 87626408 -94788834 + L1PA13 LINE L1 2833 6150 -13 520 255 65 56 chr6 87626426 87626642 -94788600 - L1MA10 LINE L1 -6 6328 6111 536 153 0 0 chr6 87626643 87626728 -94788514 + MSTA LTR MaLR 3 87 -341 492 126 0 58 chr6 87626723 87626810 -94788432 + MSTA LTR MaLR 347 428 0 * 13217 209 29 15 chr6 87626810 87630990 -94784252 - L1MA9 LINE L1 -196 6352 2110 35665 99 8 18 chr6 87631027 87634763 -94780479 - L1PA6 LINE L1 -13 6141 2493 450 0 0 0 chr6 87634763 87634813 -94780429 + (TA)n Simple_repeat Simple_repeat 2 51 0 35665 99 8 18 chr6 87634813 87637271 -94777971 - L1PA6 LINE L1 -3661 2493 11 2122 131 7 10 chr6 87637328 87637626 -94777616 - AluSx SINE Alu -13 299 3 1746 294 43 9 chr6 87637633 87638378 -94776864 - L1MA9 LINE L1 -4346 2036 1196 13857 195 41 27 chr6 87638481 87640183 -94775059 - L1PA13 LINE L1 -3 6811 5134 198 0 0 0 chr6 87640183 87640205 -94775037 + (TG)n Simple_repeat Simple_repeat 1 22 0 13857 195 41 27 chr6 87640205 87645005 -94770237 - L1PA13 LINE L1 -1680 5134 139 3082 195 98 30 chr6 87644972 87645736 -94769506 - L1M3c LINE L1 -4662 2066 1251 * 1564 277 26 40 chr6 87645820 87646216 -94769026 - L1M3c LINE L1 -5638 503 103 1750 143 63 30 chr6 87646216 87646579 -94768663 + THE1C LTR MaLR 1 375 0 8736 153 21 38 chr6 87646582 87648187 -94767055 + THE1C-int LTR MaLR 4 1580 0 1665 160 54 35 chr6 87648187 87648555 -94766687 + THE1C LTR MaLR 1 375 0 1564 277 26 40 chr6 87648555 87648659 -94766583 - L1M3c LINE L1 -6038 103 5 2761 238 33 28 chr6 87651484 87653061 -94762181 - L1MEc LINE L1 -2958 3424 1624 4031 78 28 5 chr6 87653064 87653645 -94761597 - L1PA7 LINE L1 -1 6153 5560 29718 106 41 26 chr6 87653759 87659242 -94756000 - L1P2 LINE L1 -396 6073 381 381 290 27 42 chr6 87659241 87659586 -94755656 - L1MEc LINE L1 -4832 1448 1208 * 410 229 52 86 chr6 87659605 87659815 -94755427 - L1MEc LINE L1 -5269 1294 1092 2158 286 34 22 chr6 87659885 87660687 -94754555 - L1MEc LINE L1 -5455 1108 298 191 231 0 0 chr6 87660942 87660981 -94754261 - L2 LINE L2 -16 3297 3259 687 271 54 15 chr6 87661037 87661240 -94754002 + MLT1H LTR MaLR 1 211 -338 1625 113 0 5 chr6 87661242 87661463 -94753779 + AluSg SINE Alu 1 220 -90 2003 67 25 32 chr6 87661634 87661918 -94753324 - AluY SINE Alu 0 311 30 22 35 0 0 chr6 87662578 87662607 -94752635 + AT_rich Low_complexity Low_complexity 1 29 0 342 303 92 23 chr6 87663693 87664041 -94751201 - L1MC4a LINE L1 -321 5800 5549 27 49 0 0 chr6 87664104 87664145 -94751097 + AT_rich Low_complexity Low_complexity 1 41 0 289 283 22 51 chr6 87664305 87664443 -94750799 - MLT1J LTR MaLR -31 480 347 412 232 184 3 chr6 87664601 87664763 -94750479 - MLT1J LTR MaLR -281 187 10 23 33 0 0 chr6 87666982 87667012 -94748230 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr6 87667026 87667060 -94748182 + AT_rich Low_complexity Low_complexity 1 34 0 226 275 165 0 chr6 87667166 87667257 -94747985 + L2 LINE L2 1856 1961 -1353 * 412 336 8 8 chr6 87667256 87667387 -94747855 - L2 LINE L2 0 3272 3142 234 175 0 53 chr6 87667917 87667974 -94747268 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 262 302 93 35 chr6 87668934 87669106 -94746136 + MLT1L LTR MaLR 384 565 -50 609 179 8 34 chr6 87669162 87669279 -94745963 - AluJb SINE Alu -178 134 21 237 347 92 24 chr6 87669614 87669865 -94745377 - L2 LINE L2 -431 2883 2616 1547 140 7 53 chr6 87672112 87672545 -94742697 - LTR19A LTR ERV1 0 486 1 281 270 40 50 chr6 87672675 87672775 -94742467 + MIR SINE MIR 108 206 -56 292 108 0 31 chr6 87672929 87672994 -94742248 + (TA)n Simple_repeat Simple_repeat 1 63 0 438 206 46 106 chr6 87673029 87673247 -94741995 - L1ME2 LINE L1 -93 6071 5867 303 340 128 0 chr6 87673255 87673396 -94741846 - MIR SINE MIR -12 250 92 238 279 58 23 chr6 87673399 87673485 -94741757 - L2 LINE L2 0 3313 3225 861 319 126 7 chr6 87673641 87674095 -94741147 - L2 LINE L2 -351 2963 2456 449 266 86 52 chr6 87674125 87674298 -94740944 - L1MC5 LINE L1 -49 7912 7746 1082 78 0 0 chr6 87674298 87674439 -94740803 + L1PA16 LINE L1 6017 6157 -9 449 266 86 52 chr6 87674439 87674764 -94740478 - L1MC5 LINE L1 -215 7746 7397 261 306 68 58 chr6 87674808 87675014 -94740228 - L2 LINE L2 0 3313 3106 398 247 51 6 chr6 87675029 87675199 -94740043 - L1MC5 LINE L1 -547 7495 7271 900 214 6 13 chr6 87675826 87676144 -94739098 - LTR47A LTR ERVL -86 366 1 3110 155 73 74 chr6 87676150 87676968 -94738274 - LTR49-int LTR ERV1 -632 5699 5235 1831 128 36 4 chr6 87676968 87677242 -94738000 + AluSx SINE Alu 23 305 -7 3110 155 73 74 chr6 87677242 87677428 -94737814 - LTR49-int LTR ERV1 -1096 5235 5050 534 235 84 126 chr6 87677435 87677817 -94737425 - MLT1I LTR MaLR -37 372 39 22 0 0 0 chr6 87678055 87678077 -94737165 + AT_rich Low_complexity Low_complexity 1 22 0 1039 234 53 91 chr6 87678530 87678948 -94736294 - MLT1I LTR MaLR 0 409 8 2214 98 34 0 chr6 87681434 87681730 -94733512 + AluSq SINE Alu 2 307 -6 272 238 238 25 chr6 87682176 87682298 -94732944 + MER5A DNA MER1_type 39 186 -3 549 214 109 52 chr6 87683956 87684204 -94731038 + MIR SINE MIR 1 262 0 4205 173 16 7 chr6 87684368 87685132 -94730110 + L1MB1 LINE L1 5395 6165 -3 774 353 97 36 chr6 87686270 87687266 -94727976 + L2 LINE L2 1915 2971 -343 305 372 90 7 chr6 87687723 87687868 -94727374 + L2 LINE L2 3116 3272 0 360 350 96 0 chr6 87689215 87689372 -94725870 - MIR SINE MIR -19 243 72 2044 122 3 7 chr6 87689629 87689917 -94725325 - AluSg SINE Alu -23 287 1 215 358 0 75 chr6 87690939 87691112 -94724130 + L2 LINE L2 2326 2485 -829 1120 157 8 25 chr6 87691926 87692161 -94723081 + L1MA9 LINE L1 6082 6312 0 282 383 106 16 chr6 87692991 87693302 -94721940 - L2 LINE L2 -4 3268 2930 185 273 73 0 chr6 87693475 87693530 -94721712 + L2 LINE L2 1420 1478 -1836 483 18 0 0 chr6 87694684 87694740 -94720502 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2106 121 0 4 chr6 87694743 87695024 -94720218 - AluSg SINE Alu -30 280 1 31 26 0 0 chr6 87695031 87695069 -94720173 + AT_rich Low_complexity Low_complexity 1 38 0 319 262 55 48 chr6 87695406 87695551 -94719691 - L1M4 LINE L1 -1101 5045 4900 422 286 106 18 chr6 87696006 87696554 -94718688 - L1MEd LINE L1 -2875 3665 3070 549 309 44 44 chr6 87696610 87696904 -94718338 + MLT1J2 LTR MaLR 1 294 -156 309 307 66 29 chr6 87697028 87697546 -94717696 - L1MEd LINE L1 -3521 3019 2471 372 351 12 12 chr6 87697643 87697808 -94717434 - L1MEd LINE L1 -4654 2067 1903 258 263 51 29 chr6 87697835 87697972 -94717270 + L1ME LINE L1 179 318 -5887 349 269 63 26 chr6 87698063 87698426 -94716816 + L1ME LINE L1 2043 2381 -3834 719 333 113 18 chr6 87698428 87698944 -94716298 - L1MEd LINE L1 -920 1981 1308 1507 145 16 0 chr6 87698944 87699186 -94716056 + L1PB1 LINE L1 5905 6150 -1 2161 119 3 7 chr6 87699191 87699494 -94715748 + AluSg SINE Alu 1 302 -8 1368 222 85 60 chr6 87699686 87700123 -94715119 + MLT1C LTR MaLR 20 467 0 304 214 92 76 chr6 87700125 87700256 -94714986 + MIR SINE MIR 127 259 -3 191 86 0 29 chr6 87700304 87700339 -94714903 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2297 105 0 10 chr6 87700341 87700654 -94714588 - AluSx SINE Alu 0 312 3 226 261 29 0 chr6 87700681 87700750 -94714492 + (CATA)n Simple_repeat Simple_repeat 4 74 0 400 286 32 16 chr6 87701843 87702032 -94713210 - L2 LINE L2 -124 3189 2998 186 313 12 38 chr6 87702031 87702111 -94713131 - L2 LINE L2 -994 2320 2243 * 333 298 25 50 chr6 87702435 87702556 -94712686 + MIR3 SINE MIR 89 206 -2 202 245 38 0 chr6 87703359 87703412 -94711830 + L2 LINE L2 3251 3305 -8 560 258 45 54 chr6 87703891 87704112 -94711130 - MIR SINE MIR -1 261 43 2525 7 0 0 chr6 87704237 87704511 -94710731 + AluYa5 SINE Alu 27 300 -11 24 0 0 0 chr6 87704742 87704766 -94710476 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 87704811 87704832 -94710410 + AT_rich Low_complexity Low_complexity 1 21 0 523 299 122 19 chr6 87706819 87707033 -94708209 + MIR SINE MIR 2 237 -25 23 33 0 0 chr6 87707103 87707133 -94708109 + AT_rich Low_complexity Low_complexity 1 30 0 2010 150 0 0 chr6 87707153 87707440 -94707802 - AluSx SINE Alu -15 297 11 1554 107 22 0 chr6 87707813 87708037 -94707205 - MER30 DNA MER1_type 0 230 2 1924 127 71 23 chr6 87708311 87708704 -94706538 - LTR7 LTR ERV1 -38 412 1 2350 69 53 13 chr6 87708704 87709079 -94706163 - HERVH LTR ERV1 0 7713 7324 1244 129 23 9 chr6 87709079 87709296 -94705946 - HERVH LTR ERV1 -1894 5819 5600 1109 152 0 1 chr6 87709297 87709658 -94705584 - HERVH LTR ERV1 -2564 5149 4744 855 154 0 7 chr6 87709648 87709797 -94705445 - HERVH LTR ERV1 -4075 3638 3491 * 755 169 20 0 chr6 87709786 87709934 -94705308 - HERVH LTR ERV1 -4423 3290 3140 * 19263 94 25 6 chr6 87709928 87712858 -94702384 - HERVH LTR ERV1 -4726 2987 1 702 104 0 26 chr6 87712860 87712975 -94702267 - LTR7 LTR ERV1 -2 448 337 2304 112 3 6 chr6 87713571 87713884 -94701358 + AluSx SINE Alu 1 312 0 209 296 0 0 chr6 87714352 87714406 -94700836 + L2 LINE L2 3258 3311 -2 1664 208 82 7 chr6 87714468 87714883 -94700359 + MLT2B2 LTR ERVL 1 554 0 23 0 0 0 chr6 87715486 87715509 -94699733 + AT_rich Low_complexity Low_complexity 1 23 0 1118 119 34 0 chr6 87715543 87715719 -94699523 + MER20 DNA MER1_type 38 219 0 3775 196 14 0 chr6 87716271 87717042 -94698200 + L1MC1 LINE L1 5301 6082 -251 1723 128 52 25 chr6 87717043 87717410 -94697832 + Tigger2 DNA MER2_type 1 377 -2341 243 0 0 0 chr6 87717411 87717438 -94697804 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 40214 40 22 1 chr6 87717439 87723453 -94691789 - L1PA3 LINE L1 -8 6147 3 1112 123 13 0 chr6 87724099 87724253 -94690989 - AluSg/x SINE Alu -17 295 140 3106 212 39 22 chr6 87724582 87726493 -94688749 + L1PB4 LINE L1 4196 6156 0 12341 155 44 7 chr6 87726493 87726504 -94688738 + Tigger2 DNA MER2_type 396 405 -2313 1600 209 7 7 chr6 87726504 87726801 -94688441 + AluJb SINE Alu 1 297 -15 12341 155 44 7 chr6 87726801 87729029 -94686213 + Tigger2 DNA MER2_type 405 2718 0 1048 165 133 0 chr6 87729029 87729247 -94685995 + L1MC1 LINE L1 6082 6328 -5 29 60 0 0 chr6 87729553 87729603 -94685639 + AT_rich Low_complexity Low_complexity 1 50 0 724 184 68 7 chr6 87729750 87729897 -94685345 - MER5A DNA MER1_type -33 156 1 319 283 58 8 chr6 87729941 87730061 -94685181 - MIR SINE MIR -71 191 66 287 119 0 0 chr6 87732123 87732165 -94683077 + MSTA LTR MaLR 382 423 -5 22 0 0 0 chr6 87732371 87732393 -94682849 + AT_rich Low_complexity Low_complexity 1 22 0 358 315 249 22 chr6 87732964 87733595 -94681647 + L2 LINE L2 2043 2816 -498 253 322 62 48 chr6 87733663 87733809 -94681433 + L2 LINE L2 2905 3052 -220 494 308 49 42 chr6 87733841 87734149 -94681093 - LTR16C LTR ERVL 0 491 182 490 357 11 11 chr6 87734321 87734604 -94680638 - MER90 LTR ERV1 -47 567 285 2519 103 100 5 chr6 87734949 87735358 -94679884 - LTR7 LTR ERV1 -2 448 1 2241 95 53 13 chr6 87735358 87735736 -94679506 - HERVH LTR ERV1 0 7713 7321 1110 136 73 5 chr6 87735733 87735939 -94679303 - HERVH LTR ERV1 -1894 5819 5600 * 7907 112 1 4 chr6 87735940 87737145 -94678097 - HERVH LTR ERV1 -2287 4242 3951 3256 109 0 6 chr6 87737164 87737669 -94677573 - HERVH LTR ERV1 -3720 3993 3492 840 141 13 0 chr6 87737659 87737808 -94677434 - HERVH LTR ERV1 -4423 3290 3140 * 13614 108 13 37 chr6 87737802 87740485 -94674757 - HERVH LTR ERV1 -4726 2987 62 5303 110 55 6 chr6 87740587 87741471 -94673771 - HERVH LTR ERV1 -6785 928 1 2697 82 95 7 chr6 87741473 87741885 -94673357 - LTR7 LTR ERV1 -2 448 1 809 259 78 89 chr6 87742071 87742596 -94672646 - LTR33 LTR ERVL -2 519 1 213 39 0 0 chr6 87742851 87742877 -94672365 + (A)n Simple_repeat Simple_repeat 1 26 0 218 336 28 19 chr6 87743783 87743890 -94671352 + MIR3 SINE MIR 85 192 -16 704 202 41 86 chr6 87744000 87744195 -94671047 - L1ME3 LINE L1 -4 6158 5977 2110 135 7 0 chr6 87744195 87744498 -94670744 - AluSx SINE Alu -7 305 1 704 202 41 86 chr6 87744498 87744569 -94670673 - L1ME3 LINE L1 -185 5977 5904 21 57 0 0 chr6 87744922 87744957 -94670285 + AT_rich Low_complexity Low_complexity 1 35 0 345 47 0 0 chr6 87745083 87745126 -94670116 + (TG)n Simple_repeat Simple_repeat 2 44 0 427 315 42 14 chr6 87745137 87745280 -94669962 + MIR SINE MIR 4 150 -112 413 225 33 67 chr6 87747129 87747249 -94667993 - L2 LINE L2 -1 3271 3156 584 296 231 9 chr6 87748102 87748423 -94666819 + LTR16A LTR ERVL 53 444 -6 23 54 0 0 chr6 87748547 87748584 -94666658 + AT_rich Low_complexity Low_complexity 1 37 0 637 313 108 4 chr6 87750505 87750773 -94664469 - L3 LINE CR1 -859 718 423 822 264 34 21 chr6 87750803 87751042 -94664200 + MIR SINE MIR 21 262 0 260 256 0 51 chr6 87751146 87751224 -94664018 + MIR SINE MIR 81 154 -108 327 146 22 11 chr6 87751328 87751417 -94663825 + (TA)n Simple_repeat Simple_repeat 2 91 0 322 192 0 101 chr6 87751563 87751662 -94663580 + MIR SINE MIR 66 154 -108 1989 155 0 0 chr6 87752263 87752560 -94662682 - AluSx SINE Alu -13 299 3 365 341 30 30 chr6 87755314 87755481 -94659761 + MIR3 SINE MIR 25 191 -17 269 343 75 0 chr6 87756913 87757047 -94658195 - MIR SINE MIR -58 204 61 190 267 0 0 chr6 87757103 87757148 -94658094 + L2 LINE L2 3262 3306 -7 417 20 0 0 chr6 87758025 87758075 -94657167 + (TG)n Simple_repeat Simple_repeat 2 51 0 1592 266 62 16 chr6 87758127 87758643 -94656599 - MER69 DNA AcHobo -685 541 2 272 310 16 16 chr6 87758943 87759072 -94656170 - L1ME LINE L1 -491 5630 5502 340 326 79 23 chr6 87759115 87759419 -94655823 - L1ME LINE L1 -1567 4579 4259 271 287 38 25 chr6 87759653 87759810 -94655432 + L1ME LINE L1 5668 5826 -295 293 289 11 0 chr6 87759890 87759980 -94655262 + (TG)n Simple_repeat Simple_repeat 2 92 0 293 260 119 27 chr6 87760127 87760226 -94655016 - HAL1b LINE L1 -83 1265 1176 1291 197 46 65 chr6 87760226 87760596 -94654646 + MLT1A1 LTR MaLR 1 363 -2 293 260 119 27 chr6 87760596 87760715 -94654527 - HAL1b LINE L1 -172 1176 1027 1727 161 76 14 chr6 87760729 87761084 -94654158 - MLT1B LTR MaLR -13 377 1 195 42 0 0 chr6 87761240 87761264 -94653978 + (TA)n Simple_repeat Simple_repeat 2 25 0 491 291 140 7 chr6 87761267 87761552 -94653690 - HAL1b LINE L1 -551 797 475 296 265 87 79 chr6 87761622 87761875 -94653367 + MER102a DNA MER1_type 74 328 -2 339 261 75 12 chr6 87761956 87762117 -94653125 - HAL1b LINE L1 -703 645 475 1934 166 24 25 chr6 87762140 87762671 -94652571 - LTR10E LTR ERV1 -43 590 1 482 266 69 30 chr6 87762683 87762987 -94652255 - HAL1b LINE L1 -887 461 146 21 0 0 0 chr6 87764743 87764764 -94650478 + AT_rich Low_complexity Low_complexity 1 21 0 359 203 0 0 chr6 87765305 87765374 -94649868 - LTR7 LTR ERV1 -381 69 1 2261 93 53 13 chr6 87765374 87765752 -94649490 - HERVH LTR ERV1 0 7713 7321 1052 146 73 5 chr6 87765749 87765955 -94649287 - HERVH LTR ERV1 -1894 5819 5600 * 4725 134 1 11 chr6 87765956 87766740 -94648502 - HERVH LTR ERV1 -2564 5149 4374 4690 113 18 9 chr6 87767365 87768140 -94647102 + HERVH LTR ERV1 2206 2987 -4726 802 154 13 0 chr6 87768134 87768283 -94646959 + HERVH LTR ERV1 3140 3290 -4423 * 3273 160 9 19 chr6 87768273 87769183 -94646059 + HERVH LTR ERV1 3492 4426 -2228 207 235 0 118 chr6 87769635 87769720 -94645522 - MIR SINE MIR 0 262 188 1484 114 53 11 chr6 87770420 87770682 -94644560 - MER83B LTR ERV1 0 378 106 12902 102 13 14 chr6 87770908 87771622 -94643620 - HERVH LTR ERV1 -4717 2996 2283 2737 16 0 10 chr6 87771622 87771932 -94643310 + AluYa5 SINE Alu 1 307 -4 12902 102 13 14 chr6 87771932 87773283 -94641959 - HERVH LTR ERV1 -5430 2283 934 306 0 0 0 chr6 87773502 87773536 -94641706 + (TG)n Simple_repeat Simple_repeat 2 35 0 1154 264 61 68 chr6 87773550 87774092 -94641150 + MER68 LTR ERV1 11 548 -14 2299 229 64 30 chr6 87774121 87774859 -94640383 + L1ME1 LINE L1 5316 6078 -88 21 36 0 0 chr6 87775276 87775304 -94639938 + AT_rich Low_complexity Low_complexity 1 28 0 210 150 0 0 chr6 87775546 87775586 -94639656 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1900 159 41 33 chr6 87775725 87776274 -94638968 - MLT2A2 LTR ERVL 0 554 1 732 176 33 43 chr6 87776767 87776977 -94638265 - HERVH LTR ERV1 -6713 1000 793 2974 98 0 21 chr6 87777031 87777500 -94637742 - HERVH LTR ERV1 -7254 459 1 702 104 0 26 chr6 87777502 87777617 -94637625 - LTR7 LTR ERV1 -2 448 337 22 0 0 0 chr6 87778071 87778093 -94637149 + AT_rich Low_complexity Low_complexity 1 22 0 1570 165 7 33 chr6 87778215 87778487 -94636755 + AluSq SINE Alu 1 265 -48 12848 56 72 4 chr6 87778598 87780397 -94634845 - L1P LINE L1 -3960 2186 266 198 336 58 36 chr6 87782355 87782492 -94632750 + L2 LINE L2 2950 3089 -183 1242 121 72 5 chr6 87782771 87782899 -94632343 + Tigger3(Golem) DNA MER2_type 2800 2918 -120 1695 133 40 75 chr6 87782899 87783245 -94631997 + MER1B DNA MER1_type 2 335 -2 1242 121 72 5 chr6 87783245 87783339 -94631903 + Tigger3(Golem) DNA MER2_type 2918 3037 -1 310 220 16 60 chr6 87786334 87786516 -94628726 + (CAAA)n Simple_repeat Simple_repeat 3 176 0 292 227 7 78 chr6 87786543 87786697 -94628545 + A-rich Low_complexity Low_complexity 3 145 0 1266 39 0 0 chr6 87786880 87787036 -94628206 + L1PA2 LINE L1 5999 6154 -1 228 146 36 0 chr6 87787039 87787094 -94628148 + L1MB7 LINE L1 6127 6183 -1 265 245 92 20 chr6 87788093 87788191 -94627051 - L2 LINE L2 -47 3266 3162 916 277 16 4 chr6 87789966 87790215 -94625027 + MIR SINE MIR 11 262 0 1955 104 7 11 chr6 87791591 87791888 -94623354 + AluSx SINE Alu 14 309 0 24 53 0 0 chr6 87792636 87792674 -94622568 + AT_rich Low_complexity Low_complexity 1 38 0 266 0 29 0 chr6 87793523 87793557 -94621685 + (TTG)n Simple_repeat Simple_repeat 2 36 0 39733 42 27 3 chr6 87795607 87800700 -94614542 - L1P1 LINE L1 -682 5473 254 223 286 39 13 chr6 87801199 87801276 -94613966 - MIR3 SINE MIR -126 82 4 2013 134 139 16 chr6 87802131 87802512 -94612730 - MSTA LTR MaLR 0 428 1 486 252 0 43 chr6 87802711 87802826 -94612416 - L2 LINE L2 0 3313 3204 22 0 0 0 chr6 87802974 87802996 -94612246 + AT_rich Low_complexity Low_complexity 1 22 0 545 237 147 0 chr6 87804131 87804287 -94610955 + MER5A DNA MER1_type 11 189 0 207 161 0 0 chr6 87804648 87804679 -94610563 + polypurine Low_complexity Low_complexity 2 32 0 180 0 0 0 chr6 87805250 87805270 -94609972 + (A)n Simple_repeat Simple_repeat 1 20 0 224 271 17 0 chr6 87806173 87806232 -94609010 - L2 LINE L2 -102 3170 3111 1721 155 25 42 chr6 87806750 87807104 -94608138 + THE1C LTR MaLR 1 348 -27 524 31 0 0 chr6 87807205 87807269 -94607973 - L1P LINE L1 -6081 65 2 * 3857 165 26 41 chr6 87807268 87808079 -94607163 - L1MB8 LINE L1 -40 6138 5340 1386 213 21 0 chr6 87808169 87808460 -94606782 + L1MB7 LINE L1 5878 6174 -10 232 281 0 0 chr6 87808828 87808885 -94606357 - L2 LINE L2 -3 3269 3213 1982 129 0 58 chr6 87809188 87809514 -94605728 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr6 87809584 87809613 -94605629 + AT_rich Low_complexity Low_complexity 1 29 0 1899 247 62 30 chr6 87809772 87810749 -94604493 + L1MEc LINE L1 1598 2576 -3639 270 184 0 0 chr6 87810836 87810885 -94604357 - MLT1-int LTR MaLR -1322 49 1 284 218 0 0 chr6 87810894 87810949 -94604293 - MLT1-int LTR MaLR -621 750 696 406 268 42 49 chr6 87811061 87811203 -94604039 - MIR SINE MIR -119 143 3 1033 287 60 36 chr6 87812997 87813530 -94601712 - MARNA DNA Mariner -8 578 33 180 254 51 17 chr6 87813714 87813773 -94601469 + MIR SINE MIR 81 141 -67 195 267 17 17 chr6 87814194 87814254 -94600988 + MIR SINE MIR 202 261 -1 249 268 202 47 chr6 87815971 87816184 -94599058 - MLT1L LTR MaLR -18 597 352 756 185 7 0 chr6 87816446 87816581 -94598661 + AluSq/x SINE Alu 1 136 -177 22 0 0 0 chr6 87816849 87816871 -94598371 + AT_rich Low_complexity Low_complexity 1 22 0 49 43 0 0 chr6 87817012 87817082 -94598160 + AT_rich Low_complexity Low_complexity 1 70 0 574 253 111 66 chr6 87817082 87817371 -94597871 - L2 LINE L2 -43 3270 2969 2021 182 10 10 chr6 87817559 87817950 -94597292 - L1PA16 LINE L1 -3 6163 5773 180 287 149 21 chr6 87818115 87818209 -94597033 - MIR SINE MIR -105 157 52 391 248 33 16 chr6 87818439 87818560 -94596682 + MER103 DNA DNA 1 123 -43 2184 114 65 3 chr6 87818721 87819062 -94596180 + THE1B LTR MaLR 1 362 -2 9768 126 13 33 chr6 87819064 87820672 -94594570 + THE1B-int LTR MaLR 1 1576 -4 2305 152 6 3 chr6 87820676 87821037 -94594205 + THE1B LTR MaLR 1 362 -2 200 314 95 9 chr6 87822484 87822589 -94592653 - MIR3 SINE MIR -3 205 92 956 184 108 0 chr6 87822934 87823119 -94592123 - MSTB LTR MaLR -85 341 137 3266 175 47 60 chr6 87823987 87824425 -94590817 - L1MB5 LINE L1 -12 6162 5737 1676 168 67 17 chr6 87824425 87824782 -94590460 - THE1C LTR MaLR 0 375 1 3266 175 47 60 chr6 87824782 87825125 -94590117 - L1MB5 LINE L1 -437 5737 5391 247 221 16 211 chr6 87827902 87828092 -94587150 + MIR SINE MIR 2 154 -108 390 299 97 54 chr6 87829490 87829768 -94585474 + L2 LINE L2 3024 3313 0 8726 112 7 48 chr6 87830016 87831498 -94583744 - L1PA10 LINE L1 -1416 4730 3310 6186 87 27 10 chr6 87831500 87832911 -94582331 + L1PA10 LINE L1 4739 6166 -2 15158 168 20 11 chr6 87833757 87838371 -94576871 - L1MA3 LINE L1 0 7724 3069 564 257 117 8 chr6 87840686 87840943 -94574299 - Charlie7 DNA MER1_type -479 2133 1849 225 289 157 8 chr6 87841283 87841404 -94573838 - MIR SINE MIR 0 262 124 248 289 23 47 chr6 87841414 87841542 -94573700 - Charlie7 DNA MER1_type -2486 126 2 240 352 28 0 chr6 87841558 87841666 -94573576 - L2 LINE L2 -662 2652 2542 208 216 0 0 chr6 87842359 87842396 -94572846 + T-rich Low_complexity Low_complexity 5 41 0 2318 93 3 7 chr6 87843109 87843411 -94571831 + AluSq SINE Alu 3 303 -10 2688 207 67 13 chr6 87843996 87844606 -94570636 + MER82 DNA MER2_type 10 652 -1 186 377 13 50 chr6 87844709 87844868 -94570374 + L2 LINE L2 2911 3063 -250 202 163 47 0 chr6 87845006 87845049 -94570193 + CT-rich Low_complexity Low_complexity 3 47 0 481 175 12 0 chr6 87848060 87848140 -94567102 - MER44D DNA MER2_type 0 605 525 468 205 0 0 chr6 87848142 87848220 -94567022 + Tigger5 DNA MER2_type 1 78 -2245 448 154 13 13 chr6 87848221 87848299 -94566943 - Tigger5 DNA MER2_type -4 2319 2242 353 262 0 0 chr6 87848287 87848371 -94566871 + Tigger5 DNA MER2_type 2240 2323 0 * 2370 179 39 7 chr6 87848371 87848825 -94566417 - MER44D DNA MER2_type -81 524 1 373 313 87 46 chr6 87849453 87849648 -94565594 - MIR SINE MIR -11 251 49 2167 165 36 33 chr6 87850292 87850840 -94564402 - MLT2A2 LTR ERVL 0 554 1 489 117 0 0 chr6 87851065 87851142 -94564100 - AluJ/FRAM SINE Alu -6 306 230 242 290 192 31 chr6 87851287 87851511 -94563731 + MIR SINE MIR 3 262 0 2293 70 7 0 chr6 87851803 87852102 -94563140 - AluY SINE Alu -10 301 1 457 178 287 0 chr6 87853410 87853511 -94561731 - FLAM_C SINE Alu -10 133 4 304 293 140 6 chr6 87853652 87853809 -94561433 + MIR SINE MIR 74 251 -11 242 182 0 0 chr6 87854635 87854679 -94560563 - U5 snRNA snRNA -72 44 1 24 32 0 0 chr6 87855134 87855165 -94560077 + AT_rich Low_complexity Low_complexity 1 31 0 327 282 75 58 chr6 87855542 87855730 -94559512 - L1MC5 LINE L1 -68 7893 7703 22 56 0 0 chr6 87855967 87856003 -94559239 + AT_rich Low_complexity Low_complexity 1 36 0 3037 44 11 5 chr6 87856291 87856719 -94558523 - L1P LINE L1 -729 5425 4996 4787 38 2 0 chr6 87856719 87857296 -94557946 + L1PA4 LINE L1 5576 6155 0 23 0 0 0 chr6 87857802 87857825 -94557417 + AT_rich Low_complexity Low_complexity 1 23 0 255 221 156 74 chr6 87858681 87858803 -94556439 - MIR3 SINE MIR -54 154 23 222 318 108 46 chr6 87858908 87859103 -94556139 - L2 LINE L2 -447 2867 2661 15651 154 35 47 chr6 87859373 87862253 -94552989 + L1M1 LINE L1 15 2858 -4707 14766 177 29 18 chr6 87862248 87863211 -94552031 + L1M1 LINE L1 3231 4183 -3503 * 2161 118 3 3 chr6 87863211 87863508 -94551734 + AluY SINE Alu 1 297 -14 14766 177 29 18 chr6 87863508 87866223 -94549019 + L1M1 LINE L1 4183 6943 -743 6664 125 6 4 chr6 87866226 87867356 -94547886 + L1MA2 LINE L1 5172 6304 0 295 275 38 0 chr6 87867483 87867563 -94547679 - MIR SINE MIR -114 148 66 438 296 138 52 chr6 87867702 87868128 -94547114 - LTR67 LTR ERVL -5 552 90 322 286 33 0 chr6 87868317 87868408 -94546834 - ERVL LTR ERVL -2352 3412 3319 6092 112 10 1 chr6 87869092 87870022 -94545220 + L1PA15 LINE L1 5226 6163 -2 307 291 46 26 chr6 87870601 87870752 -94544490 - L1ME4a LINE L1 -26 6095 5942 249 331 104 21 chr6 87871417 87871564 -94543678 + MIR SINE MIR 3 163 -45 259 324 60 11 chr6 87871569 87871754 -94543488 - MLT1L LTR MaLR -19 596 403 3472 181 45 73 chr6 87871776 87872773 -94542469 + LTR5 LTR ERVK 1 969 0 3021 121 9 0 chr6 87872842 87873289 -94541953 - L1PA16 LINE L1 -136 6030 5580 1530 244 8 0 chr6 87873291 87873668 -94541574 + L1P LINE L1 2164 2543 -3603 769 237 19 43 chr6 87874460 87874667 -94540575 - MIR SINE MIR -50 212 11 897 230 20 10 chr6 87875364 87875568 -94539674 - MER63A DNA MER1_type -4 206 1 22 0 0 0 chr6 87877690 87877712 -94537530 + AT_rich Low_complexity Low_complexity 1 22 0 180 49 0 73 chr6 87878007 87878048 -94537194 + (TA)n Simple_repeat Simple_repeat 1 38 0 306 220 22 33 chr6 87878050 87878141 -94537101 - L1MC4 LINE L1 -1339 6703 6614 216 91 23 45 chr6 87879631 87879675 -94535567 + (TTTTTA)n Simple_repeat Simple_repeat 2 44 0 398 318 40 0 chr6 87879836 87879984 -94535258 - MIR3 SINE MIR -25 183 30 225 0 0 0 chr6 87880230 87880255 -94534987 + (TG)n Simple_repeat Simple_repeat 2 26 0 183 80 0 0 chr6 87880257 87880282 -94534960 + (TGG)n Simple_repeat Simple_repeat 2 26 0 35079 100 20 9 chr6 87881717 87887782 -94527460 + L1PA6 LINE L1 26 6154 0 332 353 0 0 chr6 87887995 87888097 -94527145 + L2 LINE L2 2594 2695 -619 530 268 186 9 chr6 87888103 87888323 -94526919 - MIR SINE MIR -1 261 3 264 296 6 88 chr6 87889437 87889596 -94525646 - L2 LINE L2 0 3313 3168 27 29 0 0 chr6 87889600 87889634 -94525608 + AT_rich Low_complexity Low_complexity 1 34 0 898 282 143 19 chr6 87889647 87890252 -94524990 - L2 LINE L2 -94 3219 2530 189 245 235 10 chr6 87890454 87890552 -94524690 - L2 LINE L2 -15 3298 3179 21 36 0 0 chr6 87890836 87890864 -94524378 + AT_rich Low_complexity Low_complexity 1 28 0 1436 235 36 10 chr6 87891102 87891493 -94523749 - LTR52 LTR ERVL -8 413 13 426 192 61 10 chr6 87891810 87891909 -94523333 + MER5A DNA MER1_type 9 112 -77 421 202 61 10 chr6 87892155 87892254 -94522988 + MER5A DNA MER1_type 9 112 -77 201 39 0 0 chr6 87892615 87892641 -94522601 + (TG)n Simple_repeat Simple_repeat 1 26 0 1803 149 26 12 chr6 87892794 87894787 -94520455 + L1PB1 LINE L1 4057 6150 -1 186 43 0 0 chr6 87894827 87894850 -94520392 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1677 85 178 0 chr6 87895441 87895711 -94519531 - LTR7 LTR ERV1 -132 318 1 2429 93 48 13 chr6 87895711 87896088 -94519154 - HERVH LTR ERV1 0 7713 7324 1431 116 23 0 chr6 87896088 87896303 -94518939 - HERVH LTR ERV1 -1894 5819 5600 7793 127 3 3 chr6 87896304 87897479 -94517763 - HERVH LTR ERV1 -2564 5149 3995 1615 130 0 4 chr6 87897481 87897727 -94517515 - HERVH LTR ERV1 -3977 3736 3492 816 158 34 0 chr6 87897717 87897863 -94517379 - HERVH LTR ERV1 -4423 3290 3140 * 5490 112 2 24 chr6 87897842 87898721 -94516521 - HERVH LTR ERV1 -4718 2995 2136 * 9271 115 21 44 chr6 87898714 87900746 -94514496 - HERVH LTR ERV1 -5538 2175 1 2592 85 119 5 chr6 87900748 87901150 -94514092 - LTR7 LTR ERV1 -2 448 1 26 0 0 0 chr6 87901264 87901290 -94513952 + AT_rich Low_complexity Low_complexity 1 26 0 1678 121 0 4 chr6 87901730 87901969 -94513273 + AluSq SINE Alu 1 238 -75 22 0 0 0 chr6 87902210 87902232 -94513010 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 87902353 87902375 -94512867 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr6 87902689 87902727 -94512515 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 87902761 87902782 -94512460 + AT_rich Low_complexity Low_complexity 1 21 0 574 156 128 9 chr6 87902793 87902902 -94512340 - FLAM_C SINE Alu -21 122 1 198 0 0 0 chr6 87903200 87903222 -94512020 + (T)n Simple_repeat Simple_repeat 1 22 0 271 320 87 29 chr6 87904597 87904769 -94510473 - MER5A DNA MER1_type -7 182 1 489 282 80 28 chr6 87904889 87905102 -94510140 + MLT1J LTR MaLR 143 366 -145 1803 42 4 17 chr6 87905444 87905681 -94509561 + L1PA4 LINE L1 5922 6155 0 1515 139 75 16 chr6 87905795 87906047 -94509195 + AluSg SINE Alu 34 300 -10 276 30 0 0 chr6 87906502 87906535 -94508707 + (TA)n Simple_repeat Simple_repeat 1 33 0 408 215 149 72 chr6 87908565 87908760 -94506482 - MER63A DNA MER1_type 0 210 1 489 300 171 9 chr6 87908953 87909163 -94506079 + MIR SINE MIR 18 261 -1 333 303 28 0 chr6 87909213 87909322 -94505920 - MIR SINE MIR -86 176 65 303 197 14 14 chr6 87909491 87909562 -94505680 - MLT1J LTR MaLR -13 577 507 286 296 80 8 chr6 87909801 87909926 -94505316 - MLT1H LTR MaLR -415 134 1 1029 260 30 103 chr6 87909932 87910096 -94505146 - MLT1J LTR MaLR -49 462 288 1283 249 36 6 chr6 87910096 87910426 -94504816 - MER58B DNA MER1_type -1 340 1 1029 260 30 103 chr6 87910426 87910757 -94504485 - MLT1J LTR MaLR -223 288 3 314 353 89 13 chr6 87911567 87911802 -94503440 + LTR16C LTR ERVL 191 443 -48 3549 101 50 61 chr6 87911826 87912412 -94502830 - LTR8 LTR ERV1 -109 582 4 468 167 0 0 chr6 87912459 87912531 -94502711 - MER5A DNA MER1_type -117 72 1 213 178 0 0 chr6 87912996 87913041 -94502201 + CT-rich Low_complexity Low_complexity 2 46 0 194 268 70 28 chr6 87913162 87913233 -94502009 - L2 LINE L2 0 3272 3199 483 276 49 32 chr6 87913533 87913718 -94501524 + MIR SINE MIR 73 260 -2 1401 81 0 0 chr6 87915638 87915812 -94499430 - AluSc SINE Alu 0 309 136 21 36 0 0 chr6 87916839 87916867 -94498375 + AT_rich Low_complexity Low_complexity 1 28 0 500 330 84 39 chr6 87916983 87917292 -94497950 - L3 LINE CR1 -37 1540 1218 194 149 15 45 chr6 87917304 87917371 -94497871 + T-rich Low_complexity Low_complexity 4 68 0 30513 75 7 1 chr6 87918182 87922894 -94492348 + L1PA6 LINE L1 1204 5940 -214 229 368 35 14 chr6 87923051 87923195 -94492047 + MIR SINE MIR 2 148 -114 243 61 0 0 chr6 87923217 87923250 -94491992 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 615 239 0 35 chr6 87923250 87923392 -94491850 - FRAM SINE Alu -31 145 9 837 137 0 8 chr6 87924352 87924483 -94490759 - AluSg/x SINE Alu -8 301 172 239 270 16 0 chr6 87925554 87925617 -94489625 + L1ME LINE L1 5522 5585 -536 1910 135 17 7 chr6 87926317 87926606 -94488636 + AluSx SINE Alu 1 292 -20 772 244 93 0 chr6 87927832 87928037 -94487205 - MER58A DNA MER1_type 0 224 1 189 333 15 15 chr6 87928849 87928915 -94486327 - L3 LINE CR1 -7 1570 1505 356 221 71 35 chr6 87929474 87929587 -94485655 + MER97b DNA MER1_type? 46 162 -891 739 119 30 30 chr6 87929708 87929842 -94485400 + MER58 DNA MER1_type 2286 2419 -1 889 218 50 79 chr6 87929848 87929941 -94485301 + MER97c DNA MER1_type? 209 303 -787 2074 115 7 0 chr6 87929941 87930220 -94485022 - AluSx SINE Alu -31 281 1 889 218 50 79 chr6 87930220 87930506 -94484736 + MER97c DNA MER1_type? 303 577 -513 625 203 162 76 chr6 87931290 87931684 -94483558 + MSTC LTR MaLR 1 428 0 2751 104 3 0 chr6 87931757 87932143 -94483099 + L1PA11 LINE L1 5535 5921 -253 2112 35 0 0 chr6 87932152 87932407 -94482835 - L1PA4 LINE L1 0 6155 5901 16355 72 8 0 chr6 87932409 87934526 -94480716 + L1P LINE L1 2 2135 -4011 1897 157 131 11 chr6 87934751 87935133 -94480109 + MSTA LTR MaLR 1 428 0 6044 206 46 29 chr6 87935667 87937621 -94477621 + L1M2c LINE L1 3 2249 -4540 2717 111 24 24 chr6 87937905 87938365 -94476877 + L1PA4 LINE L1 5696 6155 0 3233 220 73 8 chr6 87938419 87939372 -94475870 + L1M2c LINE L1 2968 3982 -2806 1396 160 75 0 chr6 87939373 87939784 -94475458 - L1M1 LINE L1 -737 5568 5136 284 83 0 21 chr6 87939788 87939831 -94475411 - L1M1 LINE L1 -1553 4593 4551 3729 141 36 5 chr6 87939831 87940497 -94474745 + L1MA5A LINE L1 5606 6292 -5 402 357 83 8 chr6 87940786 87941027 -94474215 + MIR SINE MIR 3 261 -1 26 64 0 0 chr6 87941568 87941615 -94473627 + AT_rich Low_complexity Low_complexity 1 47 0 572 61 0 12 chr6 87941751 87941833 -94473409 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 1264 233 32 35 chr6 87941849 87942196 -94473046 - MLT1A1 LTR MaLR -19 346 1 745 235 91 50 chr6 87942571 87943010 -94472232 + HAL1b LINE L1 375 831 -517 364 230 135 45 chr6 87943052 87943252 -94471990 + HAL1b LINE L1 903 1120 -228 1937 143 0 7 chr6 87943734 87944035 -94471207 + AluSx SINE Alu 2 300 -12 23 33 0 0 chr6 87944166 87944196 -94471046 + AT_rich Low_complexity Low_complexity 1 30 0 1746 171 3 7 chr6 87944284 87944589 -94470653 - AluSx SINE Alu -3 309 6 522 312 23 41 chr6 87946155 87946373 -94468869 + MIR SINE MIR 49 262 0 22255 38 34 1 chr6 87946737 87949934 -94465308 - L1PA2 LINE L1 -336 5819 2515 2968 44 0 0 chr6 87949934 87950298 -94464944 + L1PA2 LINE L1 5791 6155 0 461 196 126 42 chr6 87950338 87950481 -94464761 + L1MDa LINE L1 1964 2118 -4422 186 43 0 0 chr6 87950481 87950504 -94464738 + (A)n Simple_repeat Simple_repeat 1 23 0 776 123 0 0 chr6 87950504 87950618 -94464624 - L1P LINE L1 -1508 4638 4525 6865 67 2 3 chr6 87950618 87951526 -94463716 + L1PA8 LINE L1 5258 6170 -2 22 70 0 0 chr6 87951849 87951892 -94463350 + AT_rich Low_complexity Low_complexity 1 43 0 316 265 13 66 chr6 87952833 87952984 -94462258 - MER97c DNA MER1_type? -17 1073 894 215 132 38 19 chr6 87952985 87953038 -94462204 + (TA)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr6 87953049 87953071 -94462171 + AT_rich Low_complexity Low_complexity 1 22 0 1206 129 116 33 chr6 87953102 87953343 -94461899 - L1PA11 LINE L1 -16 6158 5898 * 7309 32 0 0 chr6 87953320 87954192 -94461050 - L1P1 LINE L1 -1366 4780 3909 5269 13 0 0 chr6 87954192 87955176 -94460066 + L1P1 LINE L1 4779 5762 -393 3174 118 23 8 chr6 87955172 87955687 -94459555 + L1P LINE L1 4628 5150 -996 * 288 77 0 0 chr6 87955967 87956006 -94459236 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 10322 185 16 8 chr6 87957363 87960231 -94455011 + L1PB1 LINE L1 2891 5785 -366 252 0 0 0 chr6 87960231 87960259 -94454983 + (TA)n Simple_repeat Simple_repeat 1 28 0 10322 185 16 8 chr6 87960259 87960628 -94454614 + L1PB1 LINE L1 5785 6150 -1 207 100 0 0 chr6 87960660 87960690 -94454552 + (A)n Simple_repeat Simple_repeat 1 30 0 304 182 0 0 chr6 87960730 87960785 -94454457 - L1MB8 LINE L1 -9 6169 6115 1880 154 0 11 chr6 87960794 87961080 -94454162 + AluJb SINE Alu 6 288 -24 235 301 82 20 chr6 87961907 87962053 -94453189 - LTR68 LTR ERV1 -577 163 9 305 409 23 0 chr6 87962870 87963041 -94452201 + L3 LINE CR1 1053 1227 -350 22 0 0 0 chr6 87963152 87963174 -94452068 + AT_rich Low_complexity Low_complexity 1 22 0 336 306 236 26 chr6 87963327 87963556 -94451686 + L3 LINE CR1 1300 1576 -1 846 371 64 40 chr6 87964482 87964802 -94450440 - L2 LINE L2 -337 2977 2666 2198 130 0 0 chr6 87964802 87965101 -94450141 - AluSg SINE Alu -11 299 1 846 371 64 40 chr6 87965101 87965609 -94449633 - L2 LINE L2 -648 2666 2129 1751 201 34 26 chr6 87965760 87966139 -94449103 - MLT1B LTR MaLR -8 382 1 23 0 0 0 chr6 87967374 87967397 -94447845 + AT_rich Low_complexity Low_complexity 1 23 0 1816 143 43 54 chr6 87968342 87968712 -94446530 + MER47A DNA MER2_type 1 366 0 341 264 136 7 chr6 87968791 87968946 -94446296 - MER5B DNA MER1_type -3 175 1 361 309 101 20 chr6 87969012 87969161 -94446081 + MIR SINE MIR 32 192 -70 202 356 59 0 chr6 87969516 87969617 -94445625 + L2 LINE L2 3166 3272 0 21 0 0 0 chr6 87969858 87969879 -94445363 + AT_rich Low_complexity Low_complexity 1 21 0 312 27 0 0 chr6 87970028 87970065 -94445177 + (TG)n Simple_repeat Simple_repeat 1 37 0 361 108 62 0 chr6 87971335 87971400 -94443842 + MADE1 DNA Mariner 12 80 0 2648 285 70 56 chr6 87971760 87973202 -94442040 + L1MEc LINE L1 36 1457 -4758 2217 75 41 0 chr6 87973202 87973495 -94441747 + AluY SINE Alu 1 305 -6 2648 285 70 56 chr6 87973495 87974216 -94441026 + L1MEc LINE L1 1457 3838 -2377 7822 26 0 0 chr6 87974219 87975158 -94440084 - L1P LINE L1 -743 5403 4465 6096 30 0 0 chr6 87975158 87975870 -94439372 + L1PA3 LINE L1 5443 6155 0 3156 248 94 24 chr6 87975873 87977229 -94438013 + L1MEc LINE L1 3818 5269 -946 28 48 0 0 chr6 87978584 87978626 -94436616 + AT_rich Low_complexity Low_complexity 1 42 0 393 272 103 15 chr6 87978722 87978858 -94436384 + MIR SINE MIR 78 225 -37 27 49 0 0 chr6 87979413 87979454 -94435788 + AT_rich Low_complexity Low_complexity 1 41 0 193 233 12 12 chr6 87979767 87979853 -94435389 + GA-rich Low_complexity Low_complexity 2 87 0 33 0 0 0 chr6 87980016 87980049 -94435193 + AT_rich Low_complexity Low_complexity 1 33 0 638 143 67 8 chr6 87980152 87980271 -94434971 + L1MB2 LINE L1 5910 6035 -136 7326 39 0 11 chr6 87980298 87981228 -94434014 - L1PA5 LINE L1 -1 6153 5223 1529 157 103 57 chr6 87981912 87982281 -94432961 - MLT1B LTR MaLR -4 386 1 198 0 0 0 chr6 87983077 87983099 -94432143 + (CAA)n Simple_repeat Simple_repeat 2 23 0 286 332 50 18 chr6 87984055 87984275 -94430967 - HAL1 LINE L1 -877 1630 1404 34 24 0 0 chr6 87984597 87984638 -94430604 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr6 87984819 87984842 -94430400 + AT_rich Low_complexity Low_complexity 1 23 0 349 316 73 48 chr6 87985391 87985597 -94429645 - MIR SINE MIR -49 213 3 1699 96 109 48 chr6 87985817 87986138 -94429104 - AluSp SINE Alu 0 339 1 2188 98 3 0 chr6 87986295 87986601 -94428641 - AluY SINE Alu -4 307 1 2132 141 25 22 chr6 87986746 87987109 -94428133 - THE1B LTR MaLR 0 364 1 237 83 0 0 chr6 87987153 87987189 -94428053 + (CA)n Simple_repeat Simple_repeat 1 36 0 1985 199 13 15 chr6 87987358 87987751 -94427491 - MSTD LTR MaLR -4 392 1 283 289 105 18 chr6 87987866 87987980 -94427262 + L2 LINE L2 3190 3313 0 27 62 0 0 chr6 87988400 87988448 -94426794 + AT_rich Low_complexity Low_complexity 1 48 0 848 331 118 31 chr6 87988448 87989937 -94425305 + L1MC4a LINE L1 2141 3758 -2388 356 237 167 0 chr6 87989954 87990068 -94425174 - MER91B DNA MER1_type -53 137 5 27 29 0 0 chr6 87990534 87990568 -94424674 + AT_rich Low_complexity Low_complexity 1 34 0 493 308 79 13 chr6 87990841 87991219 -94424023 + L1MC4a LINE L1 5508 5662 -459 24 77 0 0 chr6 87993863 87993915 -94421327 + AT_rich Low_complexity Low_complexity 1 52 0 32 26 0 0 chr6 87995227 87995266 -94419976 + AT_rich Low_complexity Low_complexity 1 39 0 221 300 165 2 chr6 87997492 87997588 -94417654 - MIR SINE MIR -57 151 42 226 170 0 21 chr6 87998376 87998423 -94416819 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 246 173 40 0 chr6 87998823 87998898 -94416344 + (TA)n Simple_repeat Simple_repeat 1 78 0 205 348 34 34 chr6 87999448 87999566 -94415676 - MIR3 SINE MIR -77 131 14 21 0 0 0 chr6 87999848 87999869 -94415373 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 88000138 88000160 -94415082 + AT_rich Low_complexity Low_complexity 1 22 0 313 312 57 7 chr6 88000462 88000603 -94414639 - L1ME LINE L1 -5169 901 754 729 231 58 61 chr6 88000603 88000831 -94414411 + L1ME2 LINE L1 5862 6090 -74 1357 216 14 3 chr6 88000831 88001127 -94414115 - AluJo SINE Alu -13 299 1 729 231 58 61 chr6 88001127 88001192 -94414050 + L1ME2 LINE L1 6090 6154 -10 323 266 16 48 chr6 88001277 88001401 -94413841 + L1ME3A LINE L1 5963 6082 -88 23 54 0 0 chr6 88001759 88001796 -94413446 + AT_rich Low_complexity Low_complexity 1 37 0 341 284 156 0 chr6 88001924 88002033 -94413209 - MIR SINE MIR -67 141 16 28 48 0 0 chr6 88002710 88002752 -94412490 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr6 88003392 88003420 -94411822 + AT_rich Low_complexity Low_complexity 1 28 0 401 343 35 0 chr6 88004096 88004239 -94411003 + MIR SINE MIR 7 154 -108 279 38 57 19 chr6 88004280 88004333 -94410909 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 13088 194 29 20 chr6 88005644 88006633 -94408609 - L1PB2 LINE L1 -3 6205 5226 306 0 0 0 chr6 88006633 88006667 -94408575 + (TC)n Simple_repeat Simple_repeat 2 35 0 13088 194 29 20 chr6 88006667 88009832 -94405410 - L1PB2 LINE L1 -982 5226 2029 2038 162 34 17 chr6 88009832 88010190 -94405052 + THE1B LTR MaLR 1 364 0 9544 125 83 1 chr6 88010190 88011651 -94403591 + THE1B-int LTR MaLR 1 1580 0 2091 139 73 14 chr6 88011651 88011995 -94403247 + THE1B LTR MaLR 1 364 0 5526 160 26 21 chr6 88011995 88012367 -94402875 - L1PB2 LINE L1 -4171 2033 1664 2140 145 13 24 chr6 88012367 88012746 -94402496 + THE1C LTR MaLR 1 375 0 5526 160 26 21 chr6 88012746 88012934 -94402308 - L1PB2 LINE L1 -4540 1664 1478 2139 132 0 6 chr6 88012934 88013245 -94401997 + AluSq SINE Alu 1 309 -4 5526 160 26 21 chr6 88013245 88014348 -94400894 - L1PB2 LINE L1 -4726 1478 361 8440 201 13 2 chr6 88014398 88016006 -94399236 - L1PA13 LINE L1 -5236 2349 724 3217 232 65 84 chr6 88016159 88017321 -94397921 + L1MDa LINE L1 2553 3736 -2804 1999 63 11 0 chr6 88017321 88017592 -94397650 + L1PA7 LINE L1 5881 6154 0 3217 232 65 84 chr6 88017592 88017715 -94397527 + L1MDa LINE L1 3736 3860 -2680 180 0 0 0 chr6 88017715 88017735 -94397507 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3217 232 65 84 chr6 88017735 88018283 -94396959 + L1MDa LINE L1 3860 4341 -2199 2297 211 22 39 chr6 88018276 88019191 -94396051 - L1MCb LINE L1 -4849 1196 623 * 487 260 184 54 chr6 88020922 88021199 -94394043 + MLT1J LTR MaLR 154 466 -45 15368 230 17 12 chr6 88021714 88025890 -94389352 - L1PA13 LINE L1 -1062 6522 2318 473 302 23 80 chr6 88026671 88027058 -94388184 - L1PA13 LINE L1 -7210 371 7 216 0 0 0 chr6 88028209 88028233 -94387009 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6805 65 23 4 chr6 88028233 88029772 -94385470 - L1PA7 LINE L1 -11 6143 4591 289 330 0 34 chr6 88031963 88032081 -94383161 - L2 LINE L2 -8 3305 3192 291 303 123 13 chr6 88032556 88032711 -94382531 + MIR SINE MIR 91 262 0 21 36 0 0 chr6 88032846 88032874 -94382368 + AT_rich Low_complexity Low_complexity 1 28 0 1670 204 47 15 chr6 88033458 88033864 -94381378 - LTR52 LTR ERVL -2 419 1 1323 216 41 11 chr6 88034153 88034421 -94380821 + AluJo SINE Alu 7 282 -30 183 80 0 0 chr6 88034424 88034449 -94380793 + (TAA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr6 88034548 88034569 -94380673 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 88035617 88035647 -94379595 + AT_rich Low_complexity Low_complexity 1 30 0 246 197 33 0 chr6 88036228 88036289 -94378953 - L1ME1 LINE L1 -12 6154 6092 862 202 27 0 chr6 88036364 88036547 -94378695 - MER5A DNA MER1_type -1 188 1 2857 181 123 2 chr6 88036605 88037196 -94378046 + LTR51 LTR ERV1 1 663 -8 475 287 26 17 chr6 88037218 88037333 -94377909 - MER5B DNA MER1_type -59 119 4 23 68 0 0 chr6 88037456 88037500 -94377742 + AT_rich Low_complexity Low_complexity 1 44 0 513 327 69 59 chr6 88038473 88038776 -94376466 + MLT1H LTR MaLR 132 437 -112 29 28 0 0 chr6 88039381 88039417 -94375825 + AT_rich Low_complexity Low_complexity 1 36 0 6616 20 7 0 chr6 88039628 88040395 -94374847 - L1PA3 LINE L1 0 6155 5384 1275 20 0 7 chr6 88040393 88040543 -94374699 + L1P LINE L1 4814 4962 -1184 * 591 26 0 13 chr6 88040528 88040606 -94374636 - L1P1 LINE L1 -703 5452 5376 * 4521 34 0 0 chr6 88040605 88041160 -94374082 + L1PA4 LINE L1 4822 5376 -770 2401 25 0 3 chr6 88041392 88041675 -94373567 + L1PA4 LINE L1 5864 6145 -10 2653 232 95 12 chr6 88041696 88042467 -94372775 + L1ME2 LINE L1 5320 6154 -10 28 61 0 0 chr6 88042913 88042962 -94372280 + AT_rich Low_complexity Low_complexity 1 49 0 263 273 107 13 chr6 88043108 88043258 -94371984 - L1ME4a LINE L1 -1 6120 5957 2275 225 14 21 chr6 88043613 88044098 -94371144 + L1MC1 LINE L1 2 483 -5943 2113 145 6 12 chr6 88044099 88044431 -94370811 - MER1B DNA MER1_type -2 337 8 381 257 9 28 chr6 88044438 88044547 -94370695 + L1MC1 LINE L1 503 609 -5817 4568 178 68 12 chr6 88044556 88044614 -94370628 + L1MC1 LINE L1 573 626 -5800 225 0 48 48 chr6 88044614 88044656 -94370586 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 4568 178 68 12 chr6 88044656 88045881 -94369361 + L1MC1 LINE L1 626 2020 -4406 1107 191 10 0 chr6 88045882 88046081 -94369161 + MER2 DNA MER2_type 1 201 -144 1921 190 69 8 chr6 88046173 88046713 -94368529 + L1MC1 LINE L1 2011 2627 -3947 35350 53 4 1 chr6 88046748 88052866 -94362376 + L1PA5 LINE L1 11 6147 -7 1625 273 89 38 chr6 88052875 88054183 -94361059 + L1MC1 LINE L1 2597 4022 -2404 889 224 35 39 chr6 88054185 88054417 -94360825 + AluJb SINE Alu 64 294 -18 2933 236 34 19 chr6 88054417 88055279 -94359963 + L1MC1 LINE L1 4014 4888 -1538 2088 194 25 7 chr6 88055303 88055746 -94359496 + L1MC1 LINE L1 6163 6613 0 285 310 52 44 chr6 88057215 88057455 -94357787 + L1P4 LINE L1 5497 5741 -425 225 212 30 30 chr6 88057769 88057835 -94357407 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 2419 60 7 0 chr6 88058112 88058412 -94356830 + AluY SINE Alu 1 302 -9 1216 241 32 88 chr6 88059019 88059554 -94355688 + MLT1D LTR MaLR 1 505 0 350 301 85 23 chr6 88059655 88059831 -94355411 + MIR SINE MIR 66 252 -10 1357 273 88 50 chr6 88060072 88060946 -94354296 + L1ME LINE L1 7 944 -5136 2278 132 79 17 chr6 88060946 88061349 -94353893 - MSTA LTR MaLR 0 428 1 1357 273 88 50 chr6 88061349 88061977 -94353265 + L1ME LINE L1 944 1546 -4534 709 219 106 67 chr6 88061994 88062277 -94352965 - MLT1A1 LTR MaLR -71 294 1 834 288 48 22 chr6 88062302 88062770 -94352472 + L1ME LINE L1 2051 2534 -3546 2061 139 93 18 chr6 88062770 88063166 -94352076 - MSTA LTR MaLR -2 426 1 834 288 48 22 chr6 88063166 88063201 -94352041 + L1ME LINE L1 2534 2567 -3513 3582 185 8 0 chr6 88063209 88063859 -94351383 - L1PA16 LINE L1 -14 6152 5498 4189 167 50 34 chr6 88063861 88064175 -94351067 + L1ME1 LINE L1 1589 1896 -4626 1753 117 60 15 chr6 88064175 88064475 -94350767 - AluSg SINE Alu 0 314 3 4189 167 50 34 chr6 88064475 88065149 -94350093 + L1ME1 LINE L1 1896 2638 -3884 688 246 12 0 chr6 88065207 88065374 -94349868 - L1PB4 LINE L1 -8 6148 5980 1232 255 23 25 chr6 88065377 88065808 -94349434 + L1ME1 LINE L1 2585 3014 -3368 1968 183 26 13 chr6 88065810 88066192 -94349050 + L1MA9 LINE L1 5752 6138 -174 1949 108 4 4 chr6 88066215 88066493 -94348749 - AluSx SINE Alu -34 278 1 369 216 62 105 chr6 88066493 88066655 -94348587 + L1MA9 LINE L1 6125 6279 -33 21 0 0 0 chr6 88066865 88066886 -94348356 + AT_rich Low_complexity Low_complexity 1 21 0 1228 267 75 17 chr6 88066996 88067584 -94347658 + L1ME1 LINE L1 3019 3640 -2742 4352 200 53 46 chr6 88067585 88067970 -94347272 + L1MB3 LINE L1 4033 4414 -1769 1864 120 14 4 chr6 88067970 88068289 -94346953 + AluSc SINE Alu 1 322 0 4352 200 53 46 chr6 88068289 88070040 -94345202 + L1MB3 LINE L1 4414 6183 0 318 312 89 21 chr6 88070406 88070688 -94344554 + L1 LINE L1 4748 5048 -1098 574 161 45 0 chr6 88070872 88070984 -94344258 - MER63 DNA MER1_type -36 1026 910 297 0 0 0 chr6 88070984 88071017 -94344225 + (CA)n Simple_repeat Simple_repeat 2 34 0 2359 250 53 33 chr6 88071022 88072472 -94342770 + L1ME1 LINE L1 3733 5307 -1075 2124 111 3 3 chr6 88072472 88072769 -94342473 + AluSg1 SINE Alu 1 297 -12 2359 250 53 33 chr6 88072769 88073109 -94342133 + L1ME1 LINE L1 5307 5639 -743 2167 230 97 15 chr6 88073128 88073780 -94341462 + L1ME1 LINE L1 5693 6397 -5 24 0 0 0 chr6 88074542 88074566 -94340676 + AT_rich Low_complexity Low_complexity 1 24 0 198 71 0 0 chr6 88076944 88076972 -94338270 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 22 73 0 15 chr6 88078671 88078693 -94336549 + AT_rich Low_complexity Low_complexity 1 22 -45 2130 129 0 0 chr6 88078693 88079004 -94336238 - AluY SINE Alu 0 311 1 22 73 0 15 chr6 88079004 88079049 -94336193 + AT_rich Low_complexity Low_complexity 22 67 0 509 350 108 0 chr6 88079988 88080202 -94335040 + L2 LINE L2 2910 3146 -167 228 35 0 0 chr6 88080203 88080232 -94335010 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 1642 273 82 19 chr6 88080267 88080642 -94334600 + L1M4 LINE L1 3835 4185 -1961 366 23 0 0 chr6 88080642 88080685 -94334557 + (TG)n Simple_repeat Simple_repeat 2 44 0 1642 273 82 19 chr6 88080685 88081056 -94334186 + L1M4 LINE L1 4185 4628 -1518 2232 86 0 16 chr6 88081089 88081392 -94333850 + AluSc SINE Alu 1 298 -11 902 262 52 102 chr6 88081481 88082213 -94333029 + L1MC5 LINE L1 6542 7237 -724 999 242 171 90 chr6 88082351 88083054 -94332188 - LTR41 LTR ERVL -8 765 6 275 286 44 0 chr6 88083056 88083147 -94332095 + L1MC5 LINE L1 7326 7420 -541 906 227 60 28 chr6 88083167 88083519 -94331723 + L1MC5 LINE L1 7571 7933 -28 333 342 65 34 chr6 88083609 88083872 -94331370 + L1M4 LINE L1 3268 3538 -2608 282 32 3 44 chr6 88084417 88084471 -94330771 + L1PA6 LINE L1 6105 6154 0 491 46 0 0 chr6 88085680 88085745 -94329497 - L1PA4 LINE L1 -11 6144 6080 212 240 0 0 chr6 88085992 88086042 -94329200 + (CTTA)n Simple_repeat Simple_repeat 2 51 0 1133 174 22 17 chr6 88086455 88086685 -94328557 + AluJo SINE Alu 56 286 -26 21 71 0 0 chr6 88086693 88086735 -94328507 + AT_rich Low_complexity Low_complexity 1 42 0 217 398 0 21 chr6 88087279 88087372 -94327870 + MIR SINE MIR 20 110 -152 337 193 41 35 chr6 88087426 88087571 -94327671 + (TA)n Simple_repeat Simple_repeat 2 147 0 767 267 24 19 chr6 88090336 88090546 -94324696 - MIR SINE MIR -46 216 6 216 284 81 0 chr6 88091316 88091390 -94323852 - L2 LINE L2 0 3313 3234 343 171 0 23 chr6 88091460 88091548 -94323694 + (TA)n Simple_repeat Simple_repeat 2 87 0 392 274 44 0 chr6 88091772 88091945 -94323297 - L1ME LINE L1 -345 5817 5635 318 294 88 26 chr6 88092255 88092483 -94322759 - L1ME LINE L1 -1131 5015 4774 25 31 0 0 chr6 88092656 88092688 -94322554 + AT_rich Low_complexity Low_complexity 1 32 0 323 273 56 28 chr6 88092825 88092968 -94322274 - L1ME LINE L1 -3547 2599 2453 272 266 86 36 chr6 88093136 88093275 -94321967 - L2 LINE L2 0 3313 3168 306 354 99 25 chr6 88093861 88094214 -94321028 - L2 LINE L2 -785 2529 2151 2372 62 7 13 chr6 88094262 88094566 -94320676 + AluY SINE Alu 1 302 -9 1662 162 0 37 chr6 88094867 88095163 -94320079 - AluJo SINE Alu -27 285 1 918 36 0 0 chr6 88095242 88095354 -94319888 - L1PA5 LINE L1 -3 6151 6040 1720 164 43 48 chr6 88095421 88095792 -94319450 - THE1C LTR MaLR -4 371 3 28 29 0 0 chr6 88095862 88095897 -94319345 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 88096337 88096365 -94318877 + AT_rich Low_complexity Low_complexity 1 28 0 1959 103 48 0 chr6 88099282 88099553 -94315689 + AluSc SINE Alu 1 284 -25 2104 179 26 13 chr6 88100021 88100412 -94314830 + MER61B LTR ERV1 1 396 -29 5013 121 8 51 chr6 88100805 88101437 -94313805 + MER61B-int LTR ERV1 364 949 -4268 3338 102 45 4 chr6 88101437 88101928 -94313314 - MER9 LTR ERVK 0 511 1 5013 121 8 51 chr6 88101928 88102183 -94313059 + MER61B-int LTR ERV1 949 1213 -4004 1873 92 14 25 chr6 88102178 88102297 -94312945 + MER61B-int LTR ERV1 1361 1480 -3737 * 2169 128 0 6 chr6 88102297 88102610 -94312632 + AluSx SINE Alu 1 311 -1 1873 92 14 25 chr6 88102610 88102773 -94312469 + MER61B-int LTR ERV1 1480 1640 -3577 * 20158 111 38 29 chr6 88102752 88105417 -94309825 + MER61B-int LTR ERV1 1972 4671 -546 2358 112 34 11 chr6 88105417 88105773 -94309469 - THE1B LTR MaLR 0 364 1 20158 111 38 29 chr6 88105773 88106325 -94308917 + MER61B-int LTR ERV1 4671 5217 0 1897 164 69 21 chr6 88106325 88106703 -94308539 + MER61B LTR ERV1 1 396 -29 212 276 142 31 chr6 88107042 88107169 -94308073 - L3 LINE CR1 -145 1432 1292 246 311 161 19 chr6 88107205 88107366 -94307876 - L3 LINE CR1 -383 1194 1011 680 47 0 0 chr6 88107904 88107990 -94307252 - AluSg/x SINE Alu -13 299 214 186 336 87 19 chr6 88108183 88108287 -94306955 - L3 LINE CR1 -794 783 673 1176 90 0 18 chr6 88108339 88108505 -94306737 + AluY SINE Alu 149 311 0 517 278 56 40 chr6 88108606 88108804 -94306438 + MIR SINE MIR 61 261 -1 22 70 0 0 chr6 88108830 88108873 -94306369 + AT_rich Low_complexity Low_complexity 1 43 0 222 342 0 0 chr6 88109901 88109980 -94305262 + L2 LINE L2 2728 2806 -508 1729 155 44 25 chr6 88112626 88112993 -94302249 + THE1C LTR MaLR 2 375 0 185 314 0 29 chr6 88113310 88113380 -94301862 - MER5B DNA MER1_type 0 178 111 661 238 33 7 chr6 88113526 88113677 -94301565 - MER5B DNA MER1_type 0 178 24 338 327 80 35 chr6 88115353 88115692 -94299550 - L1ME LINE L1 -344 5826 5473 7241 45 1 1 chr6 88115740 88116638 -94298604 - L1PA4 LINE L1 -3 6152 5255 12254 31 1 0 chr6 88116644 88118113 -94297129 + L1PA4 LINE L1 3771 5241 -905 554 318 31 18 chr6 88118297 88118520 -94296722 + MLT1J LTR MaLR 11 236 -275 234 345 103 36 chr6 88118762 88118956 -94296286 + L1MEc LINE L1 271 477 -5919 1247 236 58 16 chr6 88118974 88119338 -94295904 + L1ME2 LINE L1 5777 6155 -9 644 325 47 25 chr6 88119356 88119633 -94295609 + MLT1J LTR MaLR 229 511 0 27 29 0 0 chr6 88119939 88119973 -94295269 + AT_rich Low_complexity Low_complexity 1 34 0 25 65 0 0 chr6 88121344 88121390 -94293852 + AT_rich Low_complexity Low_complexity 1 46 0 4268 183 39 12 chr6 88122629 88122642 -94292600 - L1 LINE L1 -982 6583 6572 3208 186 30 12 chr6 88122642 88123334 -94291908 - L1MA6 LINE L1 -5 6295 5591 4268 183 39 12 chr6 88123334 88124243 -94290999 - L1 LINE L1 -993 6572 5636 393 287 6 6 chr6 88124263 88124427 -94290815 + (TA)n Simple_repeat Simple_repeat 1 164 0 28 29 0 0 chr6 88124502 88124537 -94290705 + AT_rich Low_complexity Low_complexity 1 35 0 301 74 19 19 chr6 88124778 88124832 -94290410 + (TA)n Simple_repeat Simple_repeat 2 55 0 4833 191 64 12 chr6 88124835 88126015 -94289227 - L1 LINE L1 -1923 5642 4401 364 169 0 0 chr6 88127271 88127342 -94287900 + L1 LINE L1 3712 3782 -2364 * 996 229 5 0 chr6 88127341 88127546 -94287696 - L1 LINE L1 -7347 218 13 294 29 0 0 chr6 88127832 88127867 -94287375 + (CA)n Simple_repeat Simple_repeat 2 36 0 289 337 107 5 chr6 88128247 88128443 -94286799 - L1ME LINE L1 -373 5748 5533 1207 307 114 47 chr6 88128733 88129027 -94286215 - L2 LINE L2 -1557 1757 1484 2310 87 0 0 chr6 88129027 88129326 -94285916 - AluY SINE Alu -12 299 1 1207 307 114 47 chr6 88129326 88129750 -94285492 - L2 LINE L2 -1830 1484 991 1468 206 28 68 chr6 88129751 88130145 -94285097 - MLT1B LTR MaLR -10 380 3 223 295 77 0 chr6 88130148 88130226 -94285016 - L2 LINE L2 -2306 1008 925 204 125 0 0 chr6 88131223 88131255 -94283987 + (TA)n Simple_repeat Simple_repeat 1 32 0 832 166 57 10 chr6 88131338 88131531 -94283711 + L1MC3 LINE L1 7566 7767 -18 492 272 150 6 chr6 88131687 88131867 -94283375 + MIR SINE MIR 44 249 -13 720 142 77 0 chr6 88132077 88132232 -94283010 + L1MA8 LINE L1 6125 6291 0 185 0 0 39 chr6 88133144 88133170 -94282072 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2123 236 22 72 chr6 88133173 88133767 -94281475 + MLT2B3 LTR ERVL 2 453 0 21 0 0 0 chr6 88133918 88133939 -94281303 + AT_rich Low_complexity Low_complexity 1 21 0 498 299 64 30 chr6 88134496 88134730 -94280512 + MIR SINE MIR 7 248 -14 217 301 24 36 chr6 88134735 88134818 -94280424 - MIR3 SINE MIR -44 164 83 25 0 0 0 chr6 88134924 88134949 -94280293 + AT_rich Low_complexity Low_complexity 1 25 0 399 175 48 0 chr6 88135305 88135408 -94279834 + CT-rich Low_complexity Low_complexity 3 110 0 1807 165 6 22 chr6 88135420 88135735 -94279507 - AluSx SINE Alu -2 310 1 1825 252 113 26 chr6 88136258 88136975 -94278267 - L1MC4 LINE L1 -142 7900 7122 1085 280 8 8 chr6 88137186 88137454 -94277788 - ERVL LTR ERVL -1097 4667 4400 1351 217 161 7 chr6 88138040 88138439 -94276803 + MER66A LTR ERV1 97 478 0 4196 225 130 74 chr6 88138463 88140222 -94275020 + MER66A-int LTR ERV1 21 1877 -4799 533 302 12 18 chr6 88140237 88140406 -94274836 + MER66A-int LTR ERV1 2935 3102 -3574 1350 191 31 20 chr6 88140412 88140706 -94274536 + MER66-int LTR ERV1 1125 1421 -365 836 159 13 82 chr6 88140701 88140934 -94274308 + MER66-int LTR ERV1 1350 1566 -220 * 10843 192 82 79 chr6 88140980 88142060 -94273182 + MER66-int LTR ERV1 1213 2288 -4388 189 0 0 0 chr6 88142060 88142081 -94273161 + (TTG)n Simple_repeat Simple_repeat 2 22 0 10843 192 82 79 chr6 88142081 88142623 -94272619 + MER66-int LTR ERV1 2288 2827 -3849 1775 153 36 0 chr6 88142623 88142898 -94272344 + AluSg SINE Alu 1 285 -25 10843 192 82 79 chr6 88142898 88144714 -94270528 + MER66-int LTR ERV1 2827 6676 0 1159 234 70 118 chr6 88144752 88145170 -94270072 + MER66A LTR ERV1 165 478 0 34 72 0 0 chr6 88146172 88146241 -94269001 + AT_rich Low_complexity Low_complexity 1 69 0 26366 52 7 0 chr6 88146722 88152839 -94262403 + L1PA4 LINE L1 1 6150 -5 359 286 113 16 chr6 88153161 88153346 -94261896 + MLT1D LTR MaLR 177 379 -126 291 150 50 17 chr6 88153346 88153406 -94261836 + L1MC5 LINE L1 7332 7393 -568 3142 255 82 34 chr6 88153669 88154564 -94260678 + L1MD1 LINE L1 18 955 -5585 * 3217 176 89 20 chr6 88154562 88155426 -94259816 + L1MD1 LINE L1 1823 2650 -3890 363 192 12 3 chr6 88155427 88155532 -94259710 + L1MD1 LINE L1 4263 4367 -2173 2617 273 49 12 chr6 88155553 88156312 -94258930 - MER21B LTR ERV1 -58 805 19 250 341 12 0 chr6 88156338 88156423 -94258819 - MER21B LTR ERV1 -777 86 1 1628 285 107 8 chr6 88156424 88157496 -94257746 + L1MD1 LINE L1 4369 5589 -951 2419 105 9 6 chr6 88157496 88157839 -94257403 - THE1A LTR MaLR -11 344 1 11138 108 7 1 chr6 88157839 88159407 -94255835 - THE1A-int LTR MaLR 0 1580 3 441 0 0 0 chr6 88159448 88159497 -94255745 + (TC)n Simple_repeat Simple_repeat 2 50 0 290 98 20 0 chr6 88159496 88159547 -94255695 + (TA)n Simple_repeat Simple_repeat 1 52 0 * 216 67 0 0 chr6 88159563 88159593 -94255649 + (TC)n Simple_repeat Simple_repeat 2 31 0 2625 77 61 5 chr6 88159593 88159972 -94255270 - MLT2A1 LTR ERVL -44 400 1 353 175 0 0 chr6 88159983 88160046 -94255196 + L1MD1 LINE L1 5595 5657 -883 1031 139 44 11 chr6 88160108 88160422 -94254820 - THE1A LTR MaLR 0 375 1 3110 213 92 41 chr6 88160425 88161307 -94253935 + L1MD1 LINE L1 5704 6630 -6 835 216 5 39 chr6 88161619 88161827 -94253415 - MER63B DNA MER1_type 0 435 235 29 70 0 0 chr6 88161827 88161884 -94253358 + AT_rich Low_complexity Low_complexity 1 57 0 931 228 24 24 chr6 88161911 88162122 -94253120 - MER63B DNA MER1_type -225 211 1 470 282 75 44 chr6 88162524 88162751 -94252491 - MIR SINE MIR -1 261 28 3316 100 6 4 chr6 88162832 88163321 -94251921 - L1PA10 LINE L1 -4 6164 5675 5904 151 13 1 chr6 88163321 88164338 -94250904 + L1P LINE L1 4314 5342 -804 255 317 40 0 chr6 88165415 88165516 -94249726 - MIR SINE MIR -100 162 58 1696 139 21 35 chr6 88165623 88165910 -94249332 + AluSx SINE Alu 1 283 -29 336 303 66 16 chr6 88165978 88166100 -94249142 + MIR SINE MIR 65 192 -70 181 395 0 0 chr6 88166239 88166320 -94248922 - L2 LINE L2 -995 2319 2239 2129 246 105 26 chr6 88166540 88167327 -94247915 - L1MB8 LINE L1 -1 6111 5258 449 279 46 29 chr6 88167384 88167587 -94247655 - L1MB8 LINE L1 -918 5162 4953 2991 194 91 49 chr6 88167587 88167841 -94247401 - MER54B LTR ERVL 0 793 551 648 38 0 0 chr6 88167841 88167920 -94247322 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 2991 194 91 49 chr6 88167920 88168426 -94246816 - MER54B LTR ERVL -242 551 1 449 279 46 29 chr6 88168426 88168462 -94246780 - L1MB8 LINE L1 -1127 4953 4919 1946 75 0 4 chr6 88168462 88168716 -94246526 - AluY SINE Alu -7 304 52 5831 99 18 31 chr6 88168716 88169658 -94245584 + L1MA1 LINE L1 5373 6302 0 4215 277 93 41 chr6 88169702 88173673 -94241569 - L1MB8 LINE L1 -1554 4526 357 1768 155 7 4 chr6 88174194 88174497 -94240745 - AluSx SINE Alu 0 306 3 186 364 30 0 chr6 88175450 88175516 -94239726 + L2 LINE L2 3205 3272 0 2644 219 77 15 chr6 88177216 88178011 -94237231 - L1 LINE L1 -2795 3351 2508 * 2936 185 38 61 chr6 88178006 88178740 -94236502 + L1MA10 LINE L1 5611 6327 -7 22 0 0 0 chr6 88178762 88178784 -94236458 + AT_rich Low_complexity Low_complexity 1 22 0 256 286 89 18 chr6 88178842 88178954 -94236288 + L1 LINE L1 4045 4164 -1982 773 288 61 93 chr6 88179169 88179644 -94235598 + LTR33A LTR ERVL 60 519 -4 1320 206 15 4 chr6 88179838 88180110 -94235132 + AluJb SINE Alu 30 304 -8 1989 131 3 0 chr6 88180219 88180501 -94234741 - AluSx SINE Alu -29 283 1 393 276 0 9 chr6 88180536 88180641 -94234601 - MER58C DNA MER1_type 0 215 112 275 274 17 17 chr6 88181228 88181345 -94233897 + ERVL LTR ERVL 1099 1215 -4549 1170 203 79 95 chr6 88181353 88181795 -94233447 - MER66A LTR ERV1 -11 467 97 1301 235 40 0 chr6 88181880 88182152 -94233090 - MER66A-int LTR ERV1 -4 6672 6390 * 1468 200 73 32 chr6 88182141 88182511 -94232731 - MER66A-int LTR ERV1 -1735 4941 4557 409 245 57 28 chr6 88182511 88182617 -94232625 - MER4D LTR ERV1 -712 160 52 2544 182 58 40 chr6 88182617 88183243 -94231999 - MER66A-int LTR ERV1 -2224 4452 3816 726 209 68 34 chr6 88183244 88183450 -94231792 - LTR7 LTR ERV1 0 450 238 923 115 0 14 chr6 88183653 88183792 -94231450 - LTR7 LTR ERV1 -313 137 1 1165 178 39 12 chr6 88183794 88184053 -94231189 - MER66A-int LTR ERV1 -2855 3821 3556 5104 232 24 26 chr6 88184054 88185174 -94230068 - MER66A-int LTR ERV1 -3226 3450 2333 * 7911 216 99 35 chr6 88185168 88187011 -94228231 - MER66A-int LTR ERV1 -4510 2166 183 1976 93 0 29 chr6 88187011 88187289 -94227953 - AluY SINE Alu -3 308 39 7911 216 99 35 chr6 88187289 88187462 -94227780 - MER66A-int LTR ERV1 -6493 183 22 1085 221 72 90 chr6 88187695 88188084 -94227158 - MER66A LTR ERV1 0 478 97 1501 191 47 135 chr6 88188747 88188828 -94226414 + MLT1D LTR MaLR 1 87 -418 2010 157 123 5 chr6 88188828 88189211 -94226031 - MSTA LTR MaLR 0 428 1 7683 175 51 30 chr6 88189211 88190828 -94224414 - MSTA-int LTR MaLR 0 1651 1 2522 164 17 0 chr6 88190828 88191249 -94223993 - MSTA LTR MaLR 0 428 1 1501 191 47 135 chr6 88191249 88191714 -94223528 + MLT1D LTR MaLR 84 501 -4 256 319 168 34 chr6 88191735 88191854 -94223388 + ERVL LTR ERVL 1988 2122 -3642 347 330 11 40 chr6 88191983 88192159 -94223083 + ERVL LTR ERVL 2132 2302 -3352 227 172 0 35 chr6 88192619 88192677 -94222565 - L1MCa LINE L1 -4363 2063 2008 279 318 36 109 chr6 88194406 88194598 -94220644 - MIR3 SINE MIR -6 202 25 225 330 107 51 chr6 88195615 88195812 -94219430 + MIR SINE MIR 42 249 -13 187 389 56 0 chr6 88196167 88196257 -94218985 - L2 LINE L2 -56 3216 3122 460 311 11 0 chr6 88196290 88196467 -94218775 + GA-rich Low_complexity Low_complexity 2 180 0 238 289 0 96 chr6 88198509 88198592 -94216650 + MIR SINE MIR 18 92 -116 1637 210 134 11 chr6 88198666 88199113 -94216129 + MLT1D LTR MaLR 1 502 -3 28 29 0 0 chr6 88199978 88200013 -94215229 + AT_rich Low_complexity Low_complexity 1 35 0 321 164 0 0 chr6 88200345 88200400 -94214842 + MLT2A2 LTR ERVL 399 453 0 582 275 36 6 chr6 88201874 88202041 -94213201 - MIR SINE MIR -70 192 21 28 29 0 0 chr6 88203214 88203249 -94211993 + AT_rich Low_complexity Low_complexity 1 35 0 656 112 17 17 chr6 88203717 88203833 -94211409 - L1PA15 LINE L1 0 6165 6050 300 120 0 0 chr6 88205982 88206032 -94209210 + (TA)n Simple_repeat Simple_repeat 1 50 0 188 235 0 0 chr6 88206172 88206206 -94209036 + L3b LINE CR1 1533 1566 -17 24 67 0 0 chr6 88206219 88206264 -94208978 + AT_rich Low_complexity Low_complexity 1 45 0 2016 240 123 41 chr6 88206268 88207315 -94207927 - L1ME1 LINE L1 -19 6216 5079 966 212 102 0 chr6 88207304 88207549 -94207693 - L1MD3 LINE L1 -11 7984 7715 * 274 152 0 0 chr6 88207549 88207595 -94207647 - MER89 LTR ERV1 0 559 514 503 218 56 5 chr6 88207600 88207857 -94207385 - MER89 LTR ERV1 -260 299 1 4424 221 75 38 chr6 88207858 88209187 -94206055 - L1MC4a LINE L1 -264 7544 6166 334 248 124 39 chr6 88209301 88209454 -94205788 - L1ME1 LINE L1 -2880 3335 3170 656 294 99 19 chr6 88209719 88210192 -94205050 - L1ME1 LINE L1 -4544 1852 1342 1169 304 23 39 chr6 88210218 88210734 -94204508 - L1ME1 LINE L1 -5521 684 177 30 27 0 0 chr6 88210922 88210959 -94204283 + AT_rich Low_complexity Low_complexity 1 37 0 224 336 71 57 chr6 88211157 88211297 -94203945 - MIR3 SINE MIR -7 201 60 228 346 77 0 chr6 88211445 88211523 -94203719 + L3 LINE CR1 1449 1532 -45 1975 226 82 16 chr6 88211529 88212101 -94203141 - LTR48B LTR ERV1 0 644 35 2451 99 3 43 chr6 88212105 88212478 -94202764 + THE1B LTR MaLR 5 362 -2 4816 261 42 29 chr6 88213060 88214628 -94200614 + Charlie1 DNA MER1_type 1 1588 -1173 27 0 0 0 chr6 88214961 88214988 -94200254 + AT_rich Low_complexity Low_complexity 1 27 0 498 281 14 7 chr6 88215009 88215148 -94200094 + L2 LINE L2 3172 3311 -2 300 320 0 32 chr6 88216424 88216549 -94198693 - MIR SINE MIR -64 144 24 1644 181 28 0 chr6 88217786 88218068 -94197174 - AluJo SINE Alu -22 290 1 1440 211 121 20 chr6 88218178 88218533 -94196709 - MSTD LTR MaLR -5 391 1 31 92 0 0 chr6 88218732 88218819 -94196423 + AT_rich Low_complexity Low_complexity 1 87 0 25 0 0 0 chr6 88219013 88219038 -94196204 + AT_rich Low_complexity Low_complexity 1 25 0 1197 158 108 0 chr6 88219128 88219387 -94195855 - L1MA8 LINE L1 -4 6287 6001 608 297 109 21 chr6 88219775 88220014 -94195228 + MIR SINE MIR 3 262 0 266 247 0 62 chr6 88221162 88221259 -94193983 + MLT1K LTR MaLR 498 588 0 288 137 0 0 chr6 88222237 88222288 -94192954 + (TG)n Simple_repeat Simple_repeat 2 52 0 234 207 0 35 chr6 88222423 88222481 -94192761 + (TGAA)n Simple_repeat Simple_repeat 1 56 0 208 219 0 0 chr6 88222570 88222611 -94192631 - L2 LINE L2 0 3313 3273 1977 200 83 21 chr6 88222813 88223297 -94191945 - MER67D LTR ERV1 0 514 1 321 82 0 0 chr6 88224353 88224402 -94190840 + (TG)n Simple_repeat Simple_repeat 1 49 0 432 307 34 87 chr6 88224740 88225177 -94190065 - MLT1J1 LTR MaLR -32 414 1 705 280 55 47 chr6 88226251 88226695 -94188547 - MLT1J1 LTR MaLR 0 446 1 280 338 101 25 chr6 88226762 88226960 -94188282 - L2 LINE L2 -301 2971 2762 792 126 31 0 chr6 88227007 88227134 -94188108 + L1PB1 LINE L1 3 133 -6730 14190 198 19 8 chr6 88227195 88232785 -94182457 + L1PB1 LINE L1 603 6503 -364 342 0 0 0 chr6 88232785 88232823 -94182419 + (TA)n Simple_repeat Simple_repeat 1 38 0 14190 198 19 8 chr6 88232823 88233192 -94182050 + L1PB1 LINE L1 6503 6866 -1 201 74 0 0 chr6 88233224 88233251 -94181991 + (A)n Simple_repeat Simple_repeat 1 27 0 304 182 0 0 chr6 88233291 88233346 -94181896 - L1MB8 LINE L1 -9 6169 6115 1880 154 0 11 chr6 88233355 88233641 -94181601 + AluJb SINE Alu 6 288 -24 235 301 82 20 chr6 88234468 88234614 -94180628 - LTR68 LTR ERV1 -577 163 9 305 409 23 0 chr6 88235431 88235602 -94179640 + L3 LINE CR1 1053 1227 -350 22 0 0 0 chr6 88235713 88235735 -94179507 + AT_rich Low_complexity Low_complexity 1 22 0 369 310 227 18 chr6 88235888 88236117 -94179125 + L3 LINE CR1 1300 1576 -1 870 374 63 39 chr6 88237043 88237363 -94177879 - L2 LINE L2 -337 2977 2666 2300 113 0 0 chr6 88237363 88237664 -94177578 - AluSg SINE Alu -9 301 1 870 374 63 39 chr6 88237664 88238172 -94177070 - L2 LINE L2 -648 2666 2129 1755 191 43 27 chr6 88238323 88238699 -94176543 - MLT1B LTR MaLR -8 382 1 23 0 0 0 chr6 88239930 88239953 -94175289 + AT_rich Low_complexity Low_complexity 1 23 0 1780 149 43 54 chr6 88240898 88241268 -94173974 + MER47A DNA MER2_type 1 366 0 367 258 136 7 chr6 88241347 88241502 -94173740 - MER5B DNA MER1_type -3 175 1 361 309 101 20 chr6 88241568 88241717 -94173525 + MIR SINE MIR 32 192 -70 203 356 59 0 chr6 88242079 88242180 -94173062 + L2 LINE L2 3166 3272 0 21 0 0 0 chr6 88242421 88242442 -94172800 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr6 88242593 88242624 -94172618 + (TG)n Simple_repeat Simple_repeat 1 31 0 361 108 62 0 chr6 88243893 88243958 -94171284 + MADE1 DNA Mariner 12 80 0 21248 29 0 0 chr6 88243983 88246542 -94168700 - L1PA3 LINE L1 -1710 4436 1878 7988 29 0 0 chr6 88246542 88248293 -94166949 + L1PA3 LINE L1 4434 6155 0 23 33 0 0 chr6 88248394 88248424 -94166818 + AT_rich Low_complexity Low_complexity 1 30 0 347 267 95 47 chr6 88248424 88248656 -94166586 - L1ME4a LINE L1 -195 5926 5684 2602 287 69 58 chr6 88249013 88250457 -94164785 + L1MEc LINE L1 36 1463 -4752 2257 74 40 0 chr6 88250457 88250755 -94164487 + AluY SINE Alu 1 310 -1 2602 287 69 58 chr6 88250755 88251481 -94163761 + L1MEc LINE L1 1463 3838 -2377 7669 32 0 0 chr6 88251484 88252423 -94162819 - L1P LINE L1 -743 5403 4465 6107 28 0 0 chr6 88252423 88253135 -94162107 + L1PA3 LINE L1 5443 6155 0 3081 251 95 25 chr6 88253139 88254496 -94160746 + L1MEc LINE L1 3818 5269 -946 28 48 0 0 chr6 88255851 88255893 -94159349 + AT_rich Low_complexity Low_complexity 1 42 0 393 272 103 15 chr6 88255989 88256125 -94159117 + MIR SINE MIR 78 225 -37 27 49 0 0 chr6 88256680 88256721 -94158521 + AT_rich Low_complexity Low_complexity 1 41 0 193 233 12 12 chr6 88257034 88257120 -94158122 + GA-rich Low_complexity Low_complexity 2 87 0 33 0 0 0 chr6 88257282 88257315 -94157927 + AT_rich Low_complexity Low_complexity 1 33 0 651 128 68 8 chr6 88257420 88257537 -94157705 + L1MB2 LINE L1 5912 6035 -136 7312 40 0 11 chr6 88257564 88258494 -94156748 - L1PA5 LINE L1 -1 6153 5223 1529 157 103 57 chr6 88259178 88259547 -94155695 - MLT1B LTR MaLR -4 386 1 314 296 66 25 chr6 88259996 88260175 -94155067 - MIR SINE MIR -5 257 70 183 80 0 0 chr6 88260764 88260789 -94154453 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 189 300 0 88 chr6 88261402 88261482 -94153760 + MIR SINE MIR 41 113 -95 1671 165 49 35 chr6 88261575 88261945 -94153297 + THE1C LTR MaLR 1 375 0 301 311 30 55 chr6 88263303 88263318 -94151924 + L2 LINE L2 210 224 -3090 1833 169 125 13 chr6 88263318 88263703 -94151539 + MSTA LTR MaLR 1 428 0 8225 154 30 37 chr6 88263705 88265295 -94149947 + MSTA-int LTR MaLR 3 1580 0 1851 170 111 13 chr6 88265297 88265685 -94149557 + MSTA LTR MaLR 3 428 0 301 311 30 55 chr6 88265685 88265827 -94149415 + L2 LINE L2 226 369 -2945 763 164 0 15 chr6 88265829 88265963 -94149279 + AluSq/x SINE Alu 1 132 -181 4510 308 73 34 chr6 88265967 88267864 -94147378 + L2 LINE L2 353 2322 -992 22 0 0 0 chr6 88268008 88268030 -94147212 + AT_rich Low_complexity Low_complexity 1 22 0 496 288 138 52 chr6 88268383 88269099 -94146143 + L1MD1 LINE L1 3545 4322 -1824 5925 192 57 21 chr6 88269136 88271290 -94143952 + L1MA8 LINE L1 4053 6286 -5 361 316 84 50 chr6 88271523 88271843 -94143399 + L1MD1 LINE L1 4620 4950 -1196 566 211 12 62 chr6 88272028 88272189 -94143053 + L1MD1 LINE L1 5693 5845 -397 22 35 0 0 chr6 88272615 88272644 -94142598 + AT_rich Low_complexity Low_complexity 1 29 0 236 354 21 0 chr6 88272739 88272835 -94142407 + L2 LINE L2 3201 3298 -15 844 121 29 17 chr6 88273405 88273578 -94141664 + CT-rich Low_complexity Low_complexity 2 176 0 25 31 0 0 chr6 88275560 88275592 -94139650 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr6 88275717 88275760 -94139482 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr6 88276276 88276305 -94138937 + AT_rich Low_complexity Low_complexity 1 29 0 1695 217 54 76 chr6 88276856 88277451 -94137791 + MER119 DNA MER1_type 1 582 -1 447 325 64 12 chr6 88277544 88277793 -94137449 - HAL1 LINE L1 -633 1874 1613 1659 237 61 47 chr6 88278304 88278895 -94136347 + L1MD1 LINE L1 5473 6071 -171 * 2954 184 23 23 chr6 88278366 88278979 -94136263 + L1MB7 LINE L1 5531 6143 -41 25 0 0 0 chr6 88279250 88279275 -94135967 + AT_rich Low_complexity Low_complexity 1 25 0 2199 212 45 37 chr6 88279304 88279932 -94135310 + L1 LINE L1 4555 5187 -959 261 0 0 0 chr6 88279985 88280014 -94135228 + (TA)n Simple_repeat Simple_repeat 1 29 0 810 281 25 0 chr6 88280259 88280455 -94134787 - MER58A DNA MER1_type -21 203 3 25 0 0 0 chr6 88280686 88280711 -94134531 + AT_rich Low_complexity Low_complexity 1 25 0 295 322 25 8 chr6 88282764 88282882 -94132360 - L2 LINE L2 0 3272 3153 430 310 56 42 chr6 88282947 88283163 -94132079 - MIR SINE MIR -26 236 18 2566 138 28 0 chr6 88283335 88283764 -94131478 - L1MA5A LINE L1 -3 6294 5854 3540 163 8 5 chr6 88283769 88284811 -94130431 + L1MA5A LINE L1 4801 5848 -449 413 325 69 13 chr6 88284825 88285056 -94130186 + MIR SINE MIR 13 256 -6 1328 211 19 36 chr6 88285709 88285879 -94129363 - AluJo SINE Alu -9 303 139 351 78 0 0 chr6 88285879 88285930 -94129312 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1328 211 19 36 chr6 88285930 88286067 -94129175 - AluJo SINE Alu -173 139 1 867 175 143 0 chr6 88286137 88286389 -94128853 + L1MA8 LINE L1 5994 6281 -10 1436 101 0 0 chr6 88286626 88286835 -94128407 + L1PA8 LINE L1 4376 4584 -1562 2834 68 172 128 chr6 88286835 88287398 -94127844 + LTR12 LTR ERV1 127 714 0 6745 75 16 0 chr6 88287398 88288955 -94126287 + L1PA8 LINE L1 4603 6172 0 299 275 7 0 chr6 88289650 88289792 -94125450 + (TA)n Simple_repeat Simple_repeat 2 144 0 266 323 128 12 chr6 88290794 88290958 -94124284 + MIR SINE MIR 44 226 -36 251 341 49 0 chr6 88291075 88291157 -94124085 + MIR SINE MIR 69 154 -108 27 0 0 0 chr6 88291941 88291968 -94123274 + AT_rich Low_complexity Low_complexity 1 27 0 470 45 0 15 chr6 88292029 88292095 -94123147 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 5733 154 20 7 chr6 88292985 88293345 -94121897 - L1PB1 LINE L1 -1 6150 5796 545 28 14 0 chr6 88293345 88293416 -94121826 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 5733 154 20 7 chr6 88293416 88294728 -94120514 - L1PB1 LINE L1 -355 5796 4456 7522 214 76 11 chr6 88294729 88295943 -94119299 + L1 LINE L1 2387 3769 -2377 198 0 0 0 chr6 88295943 88295965 -94119277 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 7522 214 76 11 chr6 88295965 88296638 -94118604 + L1 LINE L1 3769 4397 -1749 21 0 0 0 chr6 88296778 88296799 -94118443 + AT_rich Low_complexity Low_complexity 1 21 0 12396 171 47 24 chr6 88296810 88300528 -94114714 - L1MA6 LINE L1 0 6300 2501 1779 179 48 15 chr6 88300920 88301649 -94113593 - L1MCa LINE L1 -4432 1994 1146 614 358 78 0 chr6 88301998 88302230 -94113012 + MIR SINE MIR 13 262 0 2198 71 0 0 chr6 88302860 88303170 -94112072 + AluY SINE Alu 1 310 0 221 305 0 0 chr6 88305558 88305640 -94109602 + T-rich Low_complexity Low_complexity 1 82 0 574 165 0 0 chr6 88305716 88305813 -94109429 - AluJb SINE Alu -79 233 137 2415 218 101 62 chr6 88306688 88307612 -94107630 - L1ME2 LINE L1 -9 6155 5194 2241 53 0 0 chr6 88307612 88307894 -94107348 + L1PA5 LINE L1 5871 6152 -2 2415 218 101 62 chr6 88307894 88308068 -94107174 - L1ME2 LINE L1 -970 5194 5028 28 29 0 0 chr6 88308180 88308215 -94107027 + AT_rich Low_complexity Low_complexity 1 35 0 10349 195 25 16 chr6 88308297 88310492 -94104750 - L1M2 LINE L1 -743 5291 3195 1662 180 3 7 chr6 88310492 88310786 -94104456 - AluJb SINE Alu -19 293 1 10349 195 25 16 chr6 88310786 88311143 -94104099 - L1M2 LINE L1 -2839 3195 2843 42082 42 21 2 chr6 88311152 88317189 -94098053 - L1PA3 LINE L1 -1 6154 1 2517 272 22 14 chr6 88317206 88317981 -94097261 - L1M2 LINE L1 -3220 2814 2034 2117 242 47 25 chr6 88317993 88318945 -94096297 - L1M2 LINE L1 -4547 1418 439 1704 262 82 49 chr6 88319053 88320526 -94094716 - L1M2 LINE L1 -4161 1874 365 1471 315 62 28 chr6 88320548 88321248 -94093994 - L1M2 LINE L1 -5186 769 52 24 85 0 0 chr6 88321743 88321802 -94093440 + AT_rich Low_complexity Low_complexity 1 59 0 207 69 0 0 chr6 88322626 88322655 -94092587 + (CA)n Simple_repeat Simple_repeat 2 30 0 681 211 176 58 chr6 88322748 88323061 -94092181 - MER69 DNA AcHobo 0 2526 2177 308 75 19 19 chr6 88323555 88323608 -94091634 - L1PA8 LINE L1 -1 6171 6119 1882 60 48 0 chr6 88323608 88323826 -94091416 + L1PA8A LINE L1 5463 5696 -435 390 21 0 0 chr6 88323826 88323873 -94091369 + (CA)n Simple_repeat Simple_repeat 2 48 0 1882 60 48 0 chr6 88323873 88323902 -94091340 + L1PA8A LINE L1 5696 5722 -409 215 213 8 79 chr6 88323902 88324029 -94091213 + T-rich Low_complexity Low_complexity 2 119 0 408 300 82 44 chr6 88324040 88324739 -94090503 - L1M4 LINE L1 -2166 4044 3320 231 257 99 53 chr6 88325290 88325442 -94089800 - HAL1 LINE L1 -979 1528 1370 1013 256 113 88 chr6 88325466 88325989 -94089253 + MLT1H LTR MaLR 12 547 -2 302 277 162 43 chr6 88326191 88326426 -94088816 - L1M4 LINE L1 -4691 1450 1188 261 351 86 22 chr6 88327078 88327300 -94087942 + MLT1K LTR MaLR 193 428 -160 264 146 21 0 chr6 88327394 88327442 -94087800 + MLT1K LTR MaLR 523 571 -17 618 112 0 28 chr6 88327532 88327639 -94087603 + L1MB2 LINE L1 6068 6171 0 280 333 55 24 chr6 88328024 88328189 -94087053 + LTR67 LTR ERVL 342 511 -46 26 0 0 0 chr6 88328755 88328781 -94086461 + AT_rich Low_complexity Low_complexity 1 26 0 239 317 150 33 chr6 88328868 88328971 -94086271 - MIR SINE MIR -56 206 83 183 288 33 118 chr6 88328971 88329124 -94086118 + MIR SINE MIR 3 142 -120 2186 114 0 0 chr6 88329263 88329553 -94085689 + AluSx SINE Alu 11 300 -12 469 360 84 41 chr6 88330850 88331194 -94084048 + L2 LINE L2 2910 3268 -4 21 0 0 0 chr6 88331912 88331933 -94083309 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 88333348 88333378 -94081864 + AT_rich Low_complexity Low_complexity 1 30 0 387 287 33 33 chr6 88333963 88334113 -94081129 - MLT1G3 LTR MaLR -333 197 48 412 260 149 33 chr6 88334120 88334301 -94080941 + L2 LINE L2 3112 3313 0 222 365 58 10 chr6 88335171 88335275 -94079967 - L3b LINE CR1 -82 1501 1393 21 36 0 0 chr6 88335348 88335376 -94079866 + AT_rich Low_complexity Low_complexity 1 28 0 423 356 44 9 chr6 88335864 88336089 -94079153 + MIR SINE MIR 20 252 -10 228 67 0 0 chr6 88336447 88336477 -94078765 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 1093 244 116 15 chr6 88336675 88337081 -94078161 + L1ME3A LINE L1 5618 6064 -106 8677 120 20 1 chr6 88337153 88338414 -94076828 - HSMAR1 DNA Mariner 0 1287 3 451 116 47 23 chr6 88341088 88341174 -94074068 - L1MA8 LINE L1 -6 6285 6198 22 35 0 0 chr6 88341339 88341368 -94073874 + AT_rich Low_complexity Low_complexity 1 29 0 1033 200 5 10 chr6 88342774 88342979 -94072263 + L1M3e LINE L1 466 669 -6820 * 1484 229 15 8 chr6 88342976 88343310 -94071932 + L1M3e LINE L1 545 1227 -6338 14870 204 30 15 chr6 88343345 88347916 -94067326 + L1M3e LINE L1 2117 6754 -811 7030 194 21 2 chr6 88347918 88349371 -94065871 + L1PA15 LINE L1 3910 5389 -757 3955 133 32 20 chr6 88349506 88350222 -94065020 + L1PA15 LINE L1 5438 6162 -3 302 243 81 0 chr6 88350462 88350536 -94064706 - L2 LINE L2 -4 3309 3230 775 328 67 66 chr6 88350908 88351821 -94063421 - L2 LINE L2 -245 3068 2153 831 267 70 22 chr6 88351899 88352255 -94062987 - LTR37A LTR ERV1 0 426 54 608 316 52 82 chr6 88352330 88352852 -94062390 - L2 LINE L2 -1266 2048 1543 33060 35 3 0 chr6 88353233 88358051 -94057191 - L1PA3 LINE L1 0 6155 1322 4539 63 8 0 chr6 88358052 88358651 -94056591 + L1PA3 LINE L1 727 1330 -4816 24 32 0 0 chr6 88358926 88358957 -94056285 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr6 88359315 88359355 -94055887 + AT_rich Low_complexity Low_complexity 1 40 0 1332 227 18 0 chr6 88359468 88359592 -94055650 + AluJo SINE Alu 3 123 -189 207 0 0 0 chr6 88359592 88359615 -94055627 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1332 227 18 0 chr6 88359615 88359768 -94055474 + AluJo SINE Alu 123 285 -27 34 0 0 0 chr6 88359768 88359802 -94055440 + AT_rich Low_complexity Low_complexity 1 34 0 1673 154 4 4 chr6 88359959 88360260 -94054982 - AluSx SINE Alu 0 323 23 233 354 124 6 chr6 88360353 88360531 -94054711 + MIR SINE MIR 58 256 -6 22 35 0 0 chr6 88361251 88361280 -94053962 + AT_rich Low_complexity Low_complexity 1 29 0 3484 193 27 43 chr6 88361326 88362164 -94053078 - L1MB1 LINE L1 -3 6165 5341 5595 167 27 7 chr6 88362474 88364497 -94050745 + L1MA5A LINE L1 4241 6297 0 190 81 54 0 chr6 88364828 88364865 -94050377 + GA-rich Low_complexity Low_complexity 4 42 0 1896 134 32 99 chr6 88364990 88365363 -94049879 + Tigger3(Golem) DNA MER2_type 1 3029 0 398 179 51 0 chr6 88365602 88365680 -94049562 - MER81 DNA DNA -32 82 1 21 36 0 0 chr6 88369944 88369972 -94045270 + AT_rich Low_complexity Low_complexity 1 28 0 759 315 89 43 chr6 88370602 88371185 -94044057 + L2 LINE L2 2493 3104 -209 26 0 0 0 chr6 88371297 88371323 -94043919 + AT_rich Low_complexity Low_complexity 1 26 0 209 377 46 31 chr6 88371332 88371462 -94043780 + L2 LINE L2 3141 3272 0 361 331 113 34 chr6 88371712 88372153 -94043089 + L2 LINE L2 2776 3272 0 223 369 46 31 chr6 88372162 88372292 -94042950 + L2 LINE L2 3141 3272 0 189 244 0 0 chr6 88372377 88372418 -94042824 + L2 LINE L2 3273 3313 0 21 57 0 0 chr6 88373385 88373420 -94041822 + AT_rich Low_complexity Low_complexity 1 35 0 329 294 100 31 chr6 88373586 88373746 -94041496 - MIR SINE MIR -4 258 88 731 250 6 44 chr6 88373810 88373990 -94041252 + MER5A DNA MER1_type 17 189 0 1079 47 0 27 chr6 88376268 88376416 -94038826 - L1PA7 LINE L1 0 6154 6011 2183 68 0 38 chr6 88376611 88376904 -94038338 + AluY SINE Alu 1 282 -29 435 229 95 9 chr6 88377029 88377134 -94038108 + L2 LINE L2 3192 3305 -8 225 429 0 0 chr6 88377392 88377490 -94037752 - MIR SINE MIR -81 127 30 467 324 28 28 chr6 88377715 88377894 -94037348 - MIR3 SINE MIR 0 208 30 502 279 76 42 chr6 88379516 88379648 -94035594 - L1ME4a LINE L1 -5 6116 5990 2187 116 0 0 chr6 88379648 88379940 -94035302 - AluSx SINE Alu -18 294 3 502 279 76 42 chr6 88379940 88380023 -94035219 - L1ME4a LINE L1 -131 5990 5911 1314 219 39 0 chr6 88380023 88380302 -94034940 - AluJb SINE Alu -22 290 1 502 279 76 42 chr6 88380302 88380626 -94034616 - L1ME4a LINE L1 -210 5911 5558 217 296 0 0 chr6 88380631 88380685 -94034557 + (CATA)n Simple_repeat Simple_repeat 4 57 0 266 240 113 27 chr6 88381085 88381190 -94034052 + L1ME4a LINE L1 5750 5873 -248 1840 138 10 14 chr6 88381190 88381480 -94033762 + AluSx SINE Alu 11 299 -13 266 240 113 27 chr6 88381480 88381524 -94033718 + L1ME4a LINE L1 5873 5912 -209 404 229 0 64 chr6 88381625 88381734 -94033508 + L1ME4a LINE L1 5939 6040 -81 284 215 0 167 chr6 88381944 88382088 -94033154 - MLT1K LTR MaLR -5 583 464 21 0 0 0 chr6 88382174 88382195 -94033047 + AT_rich Low_complexity Low_complexity 1 21 0 6032 181 80 25 chr6 88382930 88383419 -94031823 - MER52A LTR ERV1 0 1755 1295 213 65 0 0 chr6 88383419 88383450 -94031792 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 6032 181 80 25 chr6 88383450 88384181 -94031061 - MER52A LTR ERV1 -460 1295 467 327 198 154 11 chr6 88384238 88384329 -94030913 - MLT1K LTR MaLR -85 503 400 487 323 81 0 chr6 88384383 88384569 -94030673 + MIR SINE MIR 32 232 -30 246 283 36 94 chr6 88385023 88385161 -94030081 + L2 LINE L2 3115 3244 -28 323 331 69 38 chr6 88385685 88385845 -94029397 - MIR SINE MIR -49 213 49 240 365 124 40 chr6 88390455 88390754 -94024488 + L2 LINE L2 2935 3258 -14 1717 163 10 20 chr6 88391798 88392093 -94023149 + AluSx SINE Alu 1 292 -20 277 192 0 26 chr6 88392178 88392256 -94022986 + (TA)n Simple_repeat Simple_repeat 1 76 0 23 54 0 0 chr6 88392413 88392450 -94022792 + AT_rich Low_complexity Low_complexity 1 37 0 407 278 11 107 chr6 88392842 88393029 -94022213 + MLT1I LTR MaLR 71 239 -170 612 298 94 47 chr6 88393565 88393927 -94021315 + MLT1J1 LTR MaLR 66 444 -2 25 31 0 0 chr6 88394035 88394067 -94021175 + AT_rich Low_complexity Low_complexity 1 32 0 390 329 159 0 chr6 88394514 88394721 -94020521 + MIR SINE MIR 23 262 0 267 114 0 0 chr6 88394882 88394926 -94020316 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr6 88395438 88395460 -94019782 + AT_rich Low_complexity Low_complexity 1 22 0 422 298 60 24 chr6 88397561 88397729 -94017513 + MIR SINE MIR 72 245 -17 847 190 20 25 chr6 88397855 88398055 -94017187 - Tigger7 DNA MER2_type -433 300 102 2384 134 3 6 chr6 88398694 88399059 -94016183 - THE1B LTR MaLR 0 364 1 9670 129 42 3 chr6 88399059 88400580 -94014662 - THE1C-int LTR MaLR 0 1580 1 2429 136 3 3 chr6 88400580 88400955 -94014287 - THE1C LTR MaLR 0 375 1 2457 237 139 34 chr6 88401136 88401892 -94013350 + L1ME LINE L1 1084 2002 -4382 1229 205 62 42 chr6 88401892 88402229 -94013013 + MER2 DNA MER2_type 1 344 0 2457 237 139 34 chr6 88402229 88402612 -94012630 + L1ME LINE L1 2002 2343 -4041 195 363 132 35 chr6 88402612 88403044 -94012198 - L2 LINE L2 -2513 801 328 309 26 0 0 chr6 88403044 88403082 -94012160 + (CA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr6 88403186 88403209 -94012033 + (TA)n Simple_repeat Simple_repeat 1 23 0 291 308 19 10 chr6 88403875 88403979 -94011263 + MIR SINE MIR 68 172 -90 208 349 23 0 chr6 88404014 88404100 -94011142 + MIR SINE MIR 169 256 -6 862 201 36 81 chr6 88404398 88404706 -94010536 + LTR37B LTR ERV1 175 468 0 1590 290 73 40 chr6 88404949 88405691 -94009551 - L1MCc LINE L1 -5014 1409 644 1315 251 66 5 chr6 88405780 88406159 -94009083 - L1MCc LINE L1 -6005 418 17 564 101 0 0 chr6 88406312 88406391 -94008851 + MADE1 DNA Mariner 1 79 -1 26 50 0 0 chr6 88406559 88406599 -94008643 + AT_rich Low_complexity Low_complexity 1 40 0 1900 132 7 11 chr6 88406856 88407143 -94008099 + AluSx SINE Alu 13 298 -14 5461 255 86 33 chr6 88407160 88409790 -94005452 + L1ME LINE L1 2932 5729 -673 1851 144 16 29 chr6 88409790 88410103 -94005139 + AluJb SINE Alu 1 309 -3 5461 255 86 33 chr6 88410103 88410404 -94004838 + L1ME LINE L1 5729 6012 -390 229 244 103 26 chr6 88412199 88412277 -94002965 + MER91A DNA MER1_type 12 95 -101 228 248 49 21 chr6 88412347 88412416 -94002826 + MER91 DNA MER1_type 127 189 -1 597 90 22 0 chr6 88413030 88413119 -94002123 - L1PA5 LINE L1 -4 6150 6060 303 362 39 8 chr6 88413355 88413482 -94001760 + MIR3 SINE MIR 8 138 -70 180 0 0 0 chr6 88414008 88414028 -94001214 + (GA)n Simple_repeat Simple_repeat 1 20 0 401 340 72 5 chr6 88414062 88414256 -94000986 - L2 LINE L2 -661 2653 2447 1687 200 82 16 chr6 88414266 88414569 -94000673 + L1MA9 LINE L1 5834 6174 -138 207 0 0 0 chr6 88414569 88414592 -94000650 + (CA)n Simple_repeat Simple_repeat 2 24 0 1687 200 82 16 chr6 88414592 88414713 -94000529 + L1MA9 LINE L1 6174 6286 -26 183 186 0 0 chr6 88414820 88414863 -94000379 + (TA)n Simple_repeat Simple_repeat 2 44 0 428 321 43 11 chr6 88415101 88415285 -93999957 - L2 LINE L2 -1055 2259 2070 349 193 102 0 chr6 88415329 88415417 -93999825 - L1MA5 LINE L1 -133 6167 6071 21 0 0 0 chr6 88415562 88415583 -93999659 + AT_rich Low_complexity Low_complexity 1 21 0 883 143 0 0 chr6 88415701 88415834 -93999408 + AluSg/x SINE Alu 173 305 -7 1218 210 13 1 chr6 88415842 88416104 -93999138 - L1P LINE L1 -1778 4368 4093 * 6302 32 0 0 chr6 88416101 88416859 -93998383 - L1PA4 LINE L1 -1179 4967 4210 7248 43 5 0 chr6 88416859 88418033 -93997209 + L1PA4 LINE L1 4976 6153 -2 1454 107 0 0 chr6 88418033 88418248 -93996994 + L1PA14 LINE L1 5944 6159 -2 1906 292 134 20 chr6 88419066 88419984 -93995258 - L2 LINE L2 -246 3067 2025 212 282 263 6 chr6 88420020 88420176 -93995066 - MIR SINE MIR -10 252 57 15931 38 26 3 chr6 88420192 88425506 -93989736 - L1PA3 LINE L1 -5 6150 614 550 59 0 0 chr6 88425506 88425574 -93989668 - L1PA3 LINE L1 -6057 89 22 214 283 80 80 chr6 88425920 88426058 -93989184 + MIR3 SINE MIR 22 159 -49 5134 174 70 16 chr6 88427860 88429028 -93986214 + L1MC2 LINE L1 5104 6329 -15 21 57 0 0 chr6 88429320 88429355 -93985887 + AT_rich Low_complexity Low_complexity 1 35 0 11322 237 58 51 chr6 88430289 88433196 -93982046 + HERVL-B2 LTR ERVL 2727 5654 0 1873 205 68 46 chr6 88433198 88433636 -93981606 + MLT2B2 LTR ERVL 3 455 -60 462 88 0 0 chr6 88433636 88433704 -93981538 + (TA)n Simple_repeat Simple_repeat 1 68 0 1873 205 68 46 chr6 88433704 88433767 -93981475 + MLT2B2 LTR ERVL 455 515 0 221 56 0 28 chr6 88434953 88434989 -93980253 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 625 75 0 0 chr6 88434989 88435069 -93980173 - L1PA3 LINE L1 -24 6131 6052 21 36 0 0 chr6 88435092 88435120 -93980122 + AT_rich Low_complexity Low_complexity 1 28 0 312 48 0 0 chr6 88435696 88435738 -93979504 + (CA)n Simple_repeat Simple_repeat 2 43 0 508 312 99 16 chr6 88435879 88436132 -93979110 - Charlie8 DNA MER1_type -2142 275 2 2815 233 138 43 chr6 88436814 88437545 -93977697 - L1MC4a LINE L1 0 7808 7148 213 39 0 0 chr6 88437545 88437571 -93977671 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2815 233 138 43 chr6 88437571 88437923 -93977319 - L1MC4a LINE L1 -660 7148 6617 1089 136 0 0 chr6 88437923 88438100 -93977142 + (TA)n Simple_repeat Simple_repeat 1 177 0 2815 233 138 43 chr6 88438100 88438113 -93977129 - L1MC4a LINE L1 -1191 6617 6607 2212 155 27 58 chr6 88538304 88538750 -93876492 - MSTB1 LTR MaLR 0 432 1 455 258 6 62 chr6 88538959 88539137 -93876105 - MLT1H LTR MaLR 0 549 382 1069 246 65 9 chr6 88540296 88540633 -93874609 + L1ME3A LINE L1 5807 6162 -8 3080 134 68 0 chr6 88540964 88541624 -93873618 + L1M3 LINE L1 2378 3080 -3782 324 256 83 16 chr6 88543293 88543414 -93871828 + L1MC4 LINE L1 6858 6986 -1056 1041 259 25 7 chr6 88543905 88544187 -93871055 + MER90 LTR ERV1 327 613 -1 625 80 51 28 chr6 88544299 88544475 -93870767 + GA-rich Low_complexity Low_complexity 1 180 0 3280 185 40 19 chr6 88544596 88545668 -93869574 + L1M3 LINE L1 5292 6375 -521 841 144 29 7 chr6 88545678 88545817 -93869425 - Tigger3(Golem) DNA MER2_type -1 3028 2887 1251 121 0 0 chr6 88545881 88546055 -93869187 + AluSx SINE Alu 1 174 -138 225 0 0 0 chr6 88546433 88546458 -93868784 + (TG)n Simple_repeat Simple_repeat 2 26 0 368 278 83 58 chr6 88546459 88546772 -93868470 - L1M4 LINE L1 -1324 4822 4502 922 280 101 67 chr6 88547193 88548061 -93867181 - L1M4 LINE L1 -2185 3961 3064 2044 44 0 0 chr6 88548200 88548451 -93866791 + L1PA8 LINE L1 5807 6057 -115 208 294 185 0 chr6 88548556 88548648 -93866594 - MIR SINE MIR -81 127 19 333 0 0 0 chr6 88549533 88549570 -93865672 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2339 4 0 0 chr6 88549570 88549829 -93865413 - L1PA3 LINE L1 -16 6139 5881 9499 91 25 2 chr6 88550646 88552115 -93863127 + L1PBa LINE L1 1086 2730 -4133 5403 192 7 10 chr6 88552124 88553276 -93861966 + L1 LINE L1 2826 3973 -2889 493 139 65 28 chr6 88553392 88553500 -93861742 - MER58 DNA MER1_type -185 156 45 7601 175 12 3 chr6 88555494 88557711 -93857531 - L1PB1 LINE L1 -201 5950 3713 255 114 0 0 chr6 88557812 88557847 -93857395 + MER58 DNA MER1_type 2386 2420 0 262 248 64 50 chr6 88557882 88557924 -93857318 - L1MA10 LINE L1 -12 6322 6281 1169 223 151 50 chr6 88557924 88558360 -93856882 - L1ME3 LINE L1 -47 6115 5636 5532 122 30 10 chr6 88558534 88559423 -93855819 + L1PA16 LINE L1 5258 6164 -2 284 328 82 8 chr6 88559766 88559888 -93855354 + MIR SINE MIR 127 257 -5 1006 126 0 0 chr6 88560201 88560344 -93854898 + AluJb SINE Alu 170 312 0 311 294 115 28 chr6 88560860 88561146 -93854096 + L1MEd LINE L1 904 1214 -4905 10310 146 21 27 chr6 88561493 88562017 -93853225 + L1MA4A LINE L1 3268 3794 -2509 1483 176 85 18 chr6 88562017 88562289 -93852953 + AluJo SINE Alu 1 290 -22 10310 146 21 27 chr6 88562289 88564820 -93850422 + L1MA4A LINE L1 3794 6297 -6 1013 130 0 13 chr6 88565114 88565268 -93849974 + AluSg/x SINE Alu 157 308 -4 1330 143 15 0 chr6 88565397 88565600 -93849642 - MER7A DNA MER2_type -141 205 2 517 175 39 0 chr6 88565607 88565710 -93849532 + L1MB7 LINE L1 5678 5784 -390 1723 109 15 0 chr6 88565710 88565976 -93849266 + L1MA4 LINE L1 6024 6294 -6 2108 174 10 8 chr6 88565976 88566369 -93848873 + L1MB7 LINE L1 5773 6170 -14 604 309 91 31 chr6 88567258 88567611 -93847631 - MLT1J1 LTR MaLR -70 376 3 811 155 32 19 chr6 88567868 88568023 -93847219 + L1MD2 LINE L1 6169 6325 -34 537 208 27 28 chr6 88568248 88568383 -93846859 + MLT1F1 LTR MaLR 1 121 -446 2306 248 31 12 chr6 88568383 88568956 -93846286 + MLT1E2 LTR MaLR 1 584 -42 214 171 0 0 chr6 88569077 88569112 -93846130 + (CATA)n Simple_repeat Simple_repeat 2 36 0 344 297 0 0 chr6 88569113 88569204 -93846038 + L1MC4 LINE L1 6614 6704 -1338 277 282 96 10 chr6 88571735 88571864 -93843378 - MIR SINE MIR -72 136 1 332 353 161 12 chr6 88571911 88572166 -93843076 - L2 LINE L2 0 3272 2980 499 269 81 27 chr6 88573323 88573509 -93841733 + MIR SINE MIR 6 201 -61 193 128 43 0 chr6 88573511 88573558 -93841684 + CT-rich Low_complexity Low_complexity 4 52 0 729 325 67 50 chr6 88573593 88574057 -93841185 + LTR16C LTR ERVL 1 472 -19 250 323 78 65 chr6 88574252 88574469 -93840773 + MIR SINE MIR 13 232 -30 198 0 0 0 chr6 88575474 88575496 -93839746 + (T)n Simple_repeat Simple_repeat 1 22 0 792 259 107 29 chr6 88576823 88577246 -93837996 + LTR33 LTR ERVL 5 512 -9 1413 227 67 45 chr6 88577660 88578194 -93837048 + L1PBa LINE L1 6 551 -6312 2362 169 69 6 chr6 88578238 88579091 -93836151 + L1PBa LINE L1 628 1678 -5185 397 122 40 0 chr6 88579099 88579173 -93836069 + L1PBa LINE L1 1772 1848 -5015 2845 209 2 2 chr6 88579281 88579866 -93835376 - L1 LINE L1 -3207 2939 2355 1759 179 101 30 chr6 88580188 88580446 -93834796 - MLT1C LTR MaLR -1 466 163 1994 149 0 7 chr6 88580446 88580754 -93834488 - AluSx SINE Alu -1 311 6 1759 179 101 30 chr6 88580754 88580930 -93834312 - MLT1C LTR MaLR -304 163 1 23 0 0 0 chr6 88582337 88582360 -93832882 + AT_rich Low_complexity Low_complexity 1 23 0 304 23 0 47 chr6 88583510 88583553 -93831689 + L1MC1 LINE L1 6287 6327 -6 490 330 123 46 chr6 88584859 88585402 -93829840 + L1ME4a LINE L1 4067 4651 -1495 762 191 50 150 chr6 88585441 88585591 -93829651 + L1ME1 LINE L1 1751 1914 -4482 3313 162 5 10 chr6 88585591 88586170 -93829072 + L1MB3 LINE L1 5607 6182 -1 762 191 50 150 chr6 88586170 88586460 -93828782 + L1ME1 LINE L1 1914 2147 -4249 761 213 115 0 chr6 88586464 88586708 -93828534 + L1ME1 LINE L1 2240 2511 -3704 2593 229 35 14 chr6 88586720 88587353 -93827889 + L1ME1 LINE L1 5428 6073 -162 240 200 0 33 chr6 88587461 88587521 -93827721 + L1MA10 LINE L1 6273 6330 -4 21 0 0 0 chr6 88587535 88587556 -93827686 + AT_rich Low_complexity Low_complexity 1 21 0 525 289 85 15 chr6 88588106 88588366 -93826876 + L1ME4a LINE L1 5600 5877 -244 1443 203 167 6 chr6 88588450 88588809 -93826433 - MER47B DNA MER2_type -1 417 1 457 317 117 39 chr6 88589452 88589733 -93825509 + L2 LINE L2 3011 3313 0 1095 211 44 52 chr6 88590148 88590418 -93824824 - AluSx SINE Alu -44 268 1 3063 161 64 2 chr6 88590558 88591137 -93824105 + L1MA8 LINE L1 5676 6290 -1 1105 243 91 35 chr6 88591790 88592132 -93823110 - LTR16C LTR ERVL -98 393 33 230 231 192 0 chr6 88593767 88593845 -93821397 + MIR3 SINE MIR 87 179 -29 1114 182 49 0 chr6 88594726 88594929 -93820313 + AluJo SINE Alu 3 215 -97 794 280 35 0 chr6 88595029 88595229 -93820013 - MIR SINE MIR -24 238 32 242 86 29 0 chr6 88595232 88595267 -93819975 - MADE1 DNA Mariner -43 37 2 464 305 89 32 chr6 88596076 88596266 -93818976 + MIR SINE MIR 2 202 -60 383 222 0 44 chr6 88597555 88597645 -93817597 - L2 LINE L2 -1 3271 3186 2385 56 10 10 chr6 88598304 88598606 -93816636 + AluY SINE Alu 1 302 -9 522 230 153 50 chr6 88599379 88599718 -93815524 - L1ME4a LINE L1 -76 6045 5672 271 102 0 68 chr6 88600160 88600219 -93815023 - L1MA2 LINE L1 0 6304 6250 611 234 8 0 chr6 88600226 88600350 -93814892 - L1ME4a LINE L1 -2163 5645 5521 229 118 0 0 chr6 88600527 88600561 -93814681 + L1 LINE L1 4521 4554 -1592 231 123 0 154 chr6 88601395 88601460 -93813782 - MLT1F LTR MaLR 0 542 488 552 105 114 53 chr6 88602032 88602146 -93813096 - MER3 DNA MER1_type -5 204 84 5583 132 42 15 chr6 88602146 88604037 -93811205 + L1MA8 LINE L1 4133 6237 -54 2079 88 4 4 chr6 88604037 88604300 -93810942 + AluSx SINE Alu 34 296 -16 5583 132 42 15 chr6 88604300 88604347 -93810895 + L1MA8 LINE L1 6237 6281 -10 278 245 0 0 chr6 88604646 88604699 -93810543 - MER3 DNA MER1_type -109 100 48 425 254 63 83 chr6 88604705 88604783 -93810459 + L2 LINE L2 3113 3191 -122 2149 191 59 41 chr6 88604783 88605274 -93809968 + MLT1D LTR MaLR 4 503 -2 425 254 63 83 chr6 88605274 88605400 -93809842 + L2 LINE L2 3191 3313 0 266 150 0 17 chr6 88605536 88605596 -93809646 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 250 296 59 44 chr6 88605682 88605817 -93809425 - MIR SINE MIR -55 207 71 25 51 0 0 chr6 88606158 88606197 -93809045 + AT_rich Low_complexity Low_complexity 1 39 0 450 204 10 10 chr6 88606228 88606331 -93808911 + MER58 DNA MER1_type 2317 2419 -1 345 47 0 0 chr6 88606597 88606640 -93808602 + (CAT)n Simple_repeat Simple_repeat 2 44 0 237 146 61 110 chr6 88607083 88607165 -93808077 - L1MC4 LINE L1 -1313 6729 6652 220 235 0 20 chr6 88607165 88607216 -93808026 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 329 235 0 78 chr6 88607222 88607324 -93807918 - L1MC4 LINE L1 -1339 6703 6610 202 254 0 48 chr6 88608478 88608541 -93806701 + (TA)n Simple_repeat Simple_repeat 2 61 0 254 297 36 41 chr6 88611038 88611168 -93804074 - MIR SINE MIR -63 145 10 1098 208 28 9 chr6 88611493 88611709 -93803533 + MER58A DNA MER1_type 1 220 -4 191 386 50 34 chr6 88612689 88613067 -93802175 - L2 LINE L2 -400 2914 2531 865 317 67 9 chr6 88613513 88613841 -93801401 - LTR16C LTR ERVL -62 429 83 865 181 48 12 chr6 88614656 88614822 -93800420 + MIR SINE MIR 66 237 -25 570 293 110 12 chr6 88614964 88615210 -93800032 + L3 LINE CR1 1303 1572 -5 426 119 0 15 chr6 88616663 88616730 -93798512 - AluS SINE Alu -237 66 1 2572 82 11 3 chr6 88617150 88617504 -93797738 + L1PA14 LINE L1 5805 6161 0 811 104 0 0 chr6 88619628 88619734 -93795508 + U6 snRNA snRNA 2 107 0 2442 199 0 11 chr6 88619734 88620273 -93794969 + L1P LINE L1 3011 3543 -2603 182 65 65 22 chr6 88620373 88620419 -93794823 + GA-rich Low_complexity Low_complexity 1 48 0 313 131 0 49 chr6 88621435 88621496 -93793746 + L1MA7 LINE L1 6210 6267 -24 991 146 0 45 chr6 88621552 88621730 -93793512 + MER2 DNA MER2_type 41 210 -135 2039 136 0 3 chr6 88621771 88622065 -93793177 - AluSx SINE Alu -19 293 1 280 206 238 0 chr6 88622085 88622148 -93793094 + MER2 DNA MER2_type 268 345 0 216 0 0 0 chr6 88622158 88622182 -93793060 + (A)n Simple_repeat Simple_repeat 1 24 0 2546 262 72 36 chr6 88622958 88623944 -93791298 - L1ME3A LINE L1 -21 6132 5069 816 154 0 0 chr6 88623944 88624067 -93791175 + FLAM_A SINE Alu 1 123 -10 2546 262 72 36 chr6 88624067 88624506 -93790736 - L1ME3A LINE L1 -1084 5069 4647 815 256 103 40 chr6 88624510 88624955 -93790287 - L1ME3A LINE L1 -2228 3901 3429 1524 282 131 14 chr6 88624963 88626127 -93789115 - L1MEd LINE L1 -2779 3350 2097 426 282 100 43 chr6 88626146 88626447 -93788795 - L1MEd LINE L1 -3995 2134 1817 566 262 67 61 chr6 88626644 88627248 -93787994 - L1MEd LINE L1 -4757 1553 926 298 244 26 0 chr6 88628211 88628289 -93786953 + L1ME3A LINE L1 6082 6161 -9 1011 260 91 31 chr6 88628505 88628921 -93786321 - L1ME3A LINE L1 -214 5939 5499 331 314 118 34 chr6 88628943 88629325 -93785917 - L1ME3A LINE L1 -3572 2557 2144 22 70 0 0 chr6 88629345 88629388 -93785854 + AT_rich Low_complexity Low_complexity 1 43 0 2284 92 0 13 chr6 88629530 88629833 -93785409 - AluSg SINE Alu -11 299 1 404 298 40 40 chr6 88630115 88630562 -93784680 - L1MEd LINE L1 -938 1552 1075 1679 164 92 3 chr6 88630669 88631005 -93784237 - L1PBa LINE L1 -5840 1023 658 922 164 0 6 chr6 88631014 88631179 -93784063 - L1PBa LINE L1 -6694 169 6 3623 160 22 0 chr6 88631199 88631800 -93783442 + L1MC2 LINE L1 5446 6059 -285 3849 239 40 34 chr6 88631827 88633088 -93782154 + L1M4 LINE L1 3883 5150 -996 1920 143 21 9 chr6 88633093 88633422 -93781820 - L1M3 LINE L1 -375 5793 5461 1029 146 18 6 chr6 88633422 88633593 -93781649 + L1PA16 LINE L1 5468 5640 -526 2994 157 6 24 chr6 88633752 88633896 -93781346 + L1PA16 LINE L1 5640 5785 -381 1584 131 13 0 chr6 88633896 88634133 -93781109 + AluSx SINE Alu 64 303 -9 2994 157 6 24 chr6 88634133 88634524 -93780718 + L1PA16 LINE L1 5785 6165 -1 1084 164 21 5 chr6 88634526 88634816 -93780426 - L1M3 LINE L1 -743 5403 5176 1935 118 7 0 chr6 88636879 88637150 -93778092 + AluSx SINE Alu 1 273 -39 22 0 0 0 chr6 88637150 88637172 -93778070 + AT_rich Low_complexity Low_complexity 1 22 0 2281 95 0 22 chr6 88637608 88637925 -93777317 + AluSx SINE Alu 3 312 0 1249 301 48 5 chr6 88638956 88639352 -93775890 + LTR16C LTR ERVL 79 491 0 2579 56 0 0 chr6 88639836 88640138 -93775104 - AluY SINE Alu -9 302 1 3760 52 4 2 chr6 88640268 88640744 -93774498 + L1PA7 LINE L1 5678 6154 0 234 267 50 20 chr6 88641238 88641339 -93773903 + L3 LINE CR1 663 766 -811 395 337 65 11 chr6 88641553 88641737 -93773505 + MIR SINE MIR 10 203 -59 834 93 16 132 chr6 88641737 88641919 -93773323 + MER20 DNA MER1_type 1 161 -58 428 362 154 7 chr6 88643641 88643939 -93771303 + L3 LINE CR1 1230 1571 -6 226 367 42 17 chr6 88644605 88644725 -93770517 - MER5A DNA MER1_type -6 183 61 245 211 19 0 chr6 88644834 88644886 -93770356 - MIR SINE MIR -106 156 104 658 234 57 21 chr6 88644973 88645165 -93770077 + MER3 DNA MER1_type 2 200 -9 21 0 0 0 chr6 88645552 88645573 -93769669 + AT_rich Low_complexity Low_complexity 1 21 0 504 298 0 0 chr6 88645928 88646042 -93769200 - MER5B DNA MER1_type -5 173 60 485 305 17 29 chr6 88646067 88646241 -93769001 - MIR3 SINE MIR -6 202 31 841 232 11 6 chr6 88646479 88646656 -93768586 + MER5B DNA MER1_type 1 178 0 27 0 0 0 chr6 88646749 88646776 -93768466 + AT_rich Low_complexity Low_complexity 1 27 0 200 261 0 11 chr6 88647146 88647234 -93768008 + A-rich Low_complexity Low_complexity 1 87 0 306 302 99 33 chr6 88647257 88647439 -93767803 - MIR SINE MIR -56 206 13 9364 176 7 3 chr6 88647557 88649327 -93765915 + L1PA13 LINE L1 3626 5402 -744 2560 89 3 0 chr6 88649326 88649685 -93765557 - L1P LINE L1 -1396 4750 4391 * 7260 44 9 0 chr6 88649689 88650580 -93764662 + L1PA7 LINE L1 5254 6152 -2 4971 122 7 10 chr6 88650580 88651349 -93763893 + L1PA13 LINE L1 5393 6158 -5 194 227 91 30 chr6 88651388 88651454 -93763788 - L2 LINE L2 0 3313 3244 606 221 13 0 chr6 88651454 88651603 -93763639 + L1 LINE L1 4761 4911 -1235 204 221 78 26 chr6 88651603 88651680 -93763562 - L2 LINE L2 -84 3229 3149 1124 229 0 0 chr6 88651688 88651924 -93763318 + MER2 DNA MER2_type 8 243 -102 379 279 63 18 chr6 88652613 88652724 -93762518 - MIR3 SINE MIR -15 193 78 34 42 0 0 chr6 88653567 88653615 -93761627 + AT_rich Low_complexity Low_complexity 1 48 0 271 278 66 63 chr6 88653615 88653972 -93761270 + MLT1H LTR MaLR 104 549 0 234 188 45 54 chr6 88654602 88654714 -93760528 + (CATA)n Simple_repeat Simple_repeat 1 111 0 21 0 0 0 chr6 88657414 88657435 -93757807 + AT_rich Low_complexity Low_complexity 1 21 0 860 294 199 27 chr6 88657732 88658175 -93757067 + LTR33 LTR ERVL 1 519 -2 2059 241 48 65 chr6 88658226 88658389 -93756853 + MLT1E LTR MaLR 1 165 -428 2290 127 117 8 chr6 88658389 88658775 -93756467 + MSTA LTR MaLR 1 428 0 2059 241 48 65 chr6 88658775 88659214 -93756028 + MLT1E LTR MaLR 165 593 0 224 291 36 82 chr6 88659571 88659767 -93755475 + L2 LINE L2 1863 2049 -1265 422 323 49 62 chr6 88659923 88660248 -93754994 + MLT1I LTR MaLR 89 409 0 245 326 68 47 chr6 88660269 88660505 -93754737 + L2 LINE L2 2140 2380 -934 582 343 118 35 chr6 88660832 88661585 -93753657 + L2 LINE L2 2038 2853 -461 812 198 6 39 chr6 88662198 88662380 -93752862 + MER3 DNA MER1_type 13 188 -21 548 198 222 0 chr6 88662422 88662548 -93752694 + MER5A DNA MER1_type 35 188 -1 378 320 41 0 chr6 88662808 88662930 -93752312 - L2 LINE L2 -5 3267 3141 2098 116 0 7 chr6 88663036 88663337 -93751905 + AluSg SINE Alu 1 299 -11 933 194 22 57 chr6 88663415 88663642 -93751600 + MER20 DNA MER1_type 1 219 0 212 246 31 46 chr6 88664034 88664099 -93751143 - MER5B DNA MER1_type -5 173 110 2513 138 111 62 chr6 88666416 88666595 -93748647 + LTR38 LTR ERV1 1 170 -386 2059 113 10 0 chr6 88666595 88666887 -93748355 + AluSx SINE Alu 13 307 -5 2513 138 111 62 chr6 88666887 88667237 -93748005 + LTR38 LTR ERV1 170 556 0 2538 130 25 0 chr6 88668367 88668760 -93746482 + L1MC1 LINE L1 5826 6228 -105 41 58 0 0 chr6 88769022 88769091 -93646151 + AT_rich Low_complexity Low_complexity 1 69 0 1508 181 69 33 chr6 88769319 88769679 -93645563 - THE1C LTR MaLR 0 375 3 2479 74 0 0 chr6 88770012 88770323 -93644919 - AluY SINE Alu 0 311 1 637 245 58 29 chr6 88771055 88771296 -93643946 - L1ME1 LINE L1 0 6166 5919 1421 274 38 9 chr6 88771314 88771844 -93643398 - L1ME1 LINE L1 -896 5250 4706 2080 153 11 14 chr6 88771844 88772209 -93643033 + THE1B LTR MaLR 1 364 0 9066 100 25 144 chr6 88772210 88772764 -93642478 + THE1B-int LTR MaLR 2 621 -959 2004 143 76 15 chr6 88772764 88773107 -93642135 + THE1B LTR MaLR 1 364 0 9066 100 25 144 chr6 88773107 88774345 -93640897 + THE1B-int LTR MaLR 621 1580 0 2217 158 11 3 chr6 88774345 88774706 -93640536 + THE1B LTR MaLR 1 364 0 887 267 85 10 chr6 88774709 88775098 -93640144 - L1ME1 LINE L1 -1446 4700 4283 668 342 50 16 chr6 88775382 88775821 -93639421 + HERV16 LTR ERVL 2289 2742 -2254 428 372 24 11 chr6 88777101 88777334 -93637908 + MIR SINE MIR 27 261 -1 426 176 14 128 chr6 88777739 88777887 -93637355 - MER104 DNA Tc2 -24 156 26 23 0 0 0 chr6 88777935 88777958 -93637284 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr6 88778346 88778376 -93636866 + AT_rich Low_complexity Low_complexity 1 30 0 1142 236 7 0 chr6 88779495 88779775 -93635467 + L1MA2 LINE L1 5049 5330 -816 4947 35 2 0 chr6 88779779 88780375 -93634867 - L1PA3 LINE L1 -1823 4323 3727 8979 26 5 0 chr6 88780375 88782206 -93633036 + L1PA3 LINE L1 4320 6154 -1 6273 103 23 2 chr6 88782206 88783157 -93632085 + L1MA2 LINE L1 5334 6304 0 398 315 65 38 chr6 88783325 88783722 -93631520 + L1ME LINE L1 623 1030 -5604 225 244 0 70 chr6 88783848 88783934 -93631308 + L1ME LINE L1 1524 1603 -4939 1055 210 127 132 chr6 88783935 88784087 -93631155 - L1M4 LINE L1 -1358 4788 4637 281 55 455 0 chr6 88784087 88784142 -93631100 - MADE1 DNA Mariner 0 80 1 1055 210 127 132 chr6 88784142 88784745 -93630497 - L1M4 LINE L1 -1509 4637 3983 240 256 13 13 chr6 88784820 88784898 -93630344 + (TA)n Simple_repeat Simple_repeat 1 78 0 243 170 0 0 chr6 88784907 88784954 -93630288 + (CATA)n Simple_repeat Simple_repeat 2 48 0 219 202 34 0 chr6 88784988 88785077 -93630165 + (TA)n Simple_repeat Simple_repeat 1 92 0 225 229 0 0 chr6 88785104 88785165 -93630077 - L1M4 LINE L1 -2451 3695 3635 23 33 0 0 chr6 88785342 88785372 -93629870 + AT_rich Low_complexity Low_complexity 1 30 0 23 92 0 0 chr6 88785844 88785909 -93629333 + AT_rich Low_complexity Low_complexity 1 65 0 5645 154 98 19 chr6 88786239 88787414 -93627828 + MER52C LTR ERV1 1 1268 -10 269 95 24 0 chr6 88787414 88787456 -93627786 + MER52C LTR ERV1 1236 1278 0 855 226 74 5 chr6 88787470 88787687 -93627555 + Charlie1b DNA MER1_type 34 265 -258 1755 222 17 46 chr6 88787688 88788166 -93627076 + L1MC3 LINE L1 6502 6965 -820 696 117 0 10 chr6 88788178 88788281 -93626961 + THE1B LTR MaLR 263 364 0 756 105 0 0 chr6 88788281 88788386 -93626856 + THE1B-int LTR MaLR 1 105 -1475 999 232 28 48 chr6 88788424 88788675 -93626567 + AluJo SINE Alu 24 279 -33 2131 137 27 30 chr6 88788675 88789040 -93626202 + THE1B LTR MaLR 1 364 0 11189 105 3 2 chr6 88789040 88790618 -93624624 + THE1B-int LTR MaLR 1 1580 0 1881 166 36 30 chr6 88790618 88790980 -93624262 + THE1B LTR MaLR 1 364 0 999 232 28 48 chr6 88790980 88791015 -93624227 + AluJo SINE Alu 276 306 -6 887 206 12 0 chr6 88791015 88791185 -93624057 + L1MC3 LINE L1 6995 7166 -619 433 328 15 35 chr6 88791381 88791719 -93623523 + MLT1-int LTR MaLR 248 578 -793 1091 296 117 49 chr6 88792652 88793185 -93622057 + MLT1G1 LTR MaLR 11 531 -11 2276 128 0 0 chr6 88793317 88793630 -93621612 - AluSq SINE Alu 0 313 1 192 40 0 0 chr6 88793646 88793671 -93621571 + (TTG)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr6 88794173 88794193 -93621049 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr6 88794463 88794493 -93620749 + AT_rich Low_complexity Low_complexity 1 30 0 280 359 93 34 chr6 88794833 88795070 -93620172 - L2 LINE L2 -338 2976 2703 2081 66 0 4 chr6 88795070 88795372 -93619870 + L1PA4 LINE L1 5865 6165 0 280 359 93 34 chr6 88795372 88795540 -93619702 - L2 LINE L2 -611 2703 2546 1500 217 3 7 chr6 88795617 88795903 -93619339 + AluJo SINE Alu 3 287 -25 259 265 88 0 chr6 88796566 88796634 -93618608 + L2 LINE L2 3137 3210 -62 2092 75 0 4 chr6 88797183 88797451 -93617791 - AluY SINE Alu -44 267 1 22 0 0 73 chr6 88797541 88797582 -93617660 + AT_rich Low_complexity Low_complexity 1 38 0 300 261 71 88 chr6 88798067 88798293 -93616949 + MLT1K LTR MaLR 349 570 -18 32 57 0 0 chr6 88799104 88799157 -93616085 + AT_rich Low_complexity Low_complexity 1 53 0 196 339 62 54 chr6 88799334 88799464 -93615778 + L2 LINE L2 3183 3313 0 1207 141 0 45 chr6 88799502 88799700 -93615542 + AluSx SINE Alu 1 189 -123 1063 301 63 11 chr6 88799771 88800333 -93614909 - L1MC/D LINE L1 -744 5402 5209 387 238 57 9 chr6 88800472 88800577 -93614665 + MIR SINE MIR 45 154 -108 23 0 0 0 chr6 88801673 88801696 -93613546 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr6 88801935 88801958 -93613284 + AT_rich Low_complexity Low_complexity 1 23 0 232 146 49 0 chr6 88802625 88802666 -93612576 - tRNA-Lys-AAG tRNA tRNA -33 43 1 198 368 84 74 chr6 88803952 88804262 -93610980 - L2 LINE L2 -1905 1409 1097 258 263 50 12 chr6 88805420 88805500 -93609742 - MIR3 SINE MIR -45 163 81 3195 239 31 54 chr6 88806059 88807334 -93607908 - L1MA6 LINE L1 -1 6299 5062 2813 217 51 33 chr6 88807331 88808250 -93606992 + L1M1 LINE L1 2763 3710 -3855 * 291 288 120 0 chr6 88809444 88809554 -93605688 - MER5A DNA MER1_type -51 138 4 29 0 0 0 chr6 88810074 88810103 -93605139 + AT_rich Low_complexity Low_complexity 1 29 0 837 262 61 4 chr6 88811161 88811390 -93603852 + L1MC4 LINE L1 7348 7589 -453 4964 30 5 0 chr6 88811407 88811997 -93603245 - L1PA4 LINE L1 -3 6152 5560 2068 73 4 11 chr6 88812014 88812288 -93602954 + AluY SINE Alu 1 272 -39 268 240 40 40 chr6 88812318 88812443 -93602799 + L1MC4 LINE L1 7918 8042 0 288 306 90 15 chr6 88812581 88812715 -93602527 + MIR3 SINE MIR 30 173 -35 316 351 135 5 chr6 88813710 88813918 -93601324 + MIR SINE MIR 2 236 -26 4124 63 0 0 chr6 88815169 88815693 -93599549 + L1PA7 LINE L1 5627 6150 -4 23 0 0 0 chr6 88816469 88816492 -93598750 + AT_rich Low_complexity Low_complexity 1 23 0 429 293 47 84 chr6 88816660 88817042 -93598200 + L1ME2 LINE L1 1605 1972 -5583 330 272 5 66 chr6 88817330 88817543 -93597699 + L1M1 LINE L1 4676 4875 -2690 1655 74 12 45 chr6 88817629 88817872 -93597370 - AluSg/x SINE Alu 0 310 76 1548 204 9 9 chr6 88818175 88818504 -93596738 - L1PA15-16 LINE L1 -3999 2850 2522 3219 179 38 2 chr6 88818505 88819138 -93596104 + L1PB4 LINE L1 5497 6152 -4 22 0 0 0 chr6 88819201 88819223 -93596019 + AT_rich Low_complexity Low_complexity 1 22 0 2548 243 119 46 chr6 88819238 88820339 -93594903 + L1ME2 LINE L1 5210 6229 -1354 1877 166 0 0 chr6 88820339 88820659 -93594583 + AluSg SINE Alu 1 320 0 2548 243 119 46 chr6 88820659 88821652 -93593590 + L1ME2 LINE L1 6229 7474 -109 2293 132 14 3 chr6 88821663 88822020 -93593222 - L1PB1 LINE L1 -6 6145 5785 208 68 54 68 chr6 88822021 88822095 -93593147 + (TA)n Simple_repeat Simple_repeat 2 74 0 2027 86 0 7 chr6 88822095 88822375 -93592867 - L1PB1 LINE L1 -360 5791 5514 283 256 90 0 chr6 88822356 88822434 -93592808 + L1ME2 LINE L1 7456 7540 -43 * 2284 164 83 22 chr6 88822816 88823260 -93591982 + L1MC3 LINE L1 6634 7104 -681 264 278 0 0 chr6 88823263 88823335 -93591907 + MLT1F1 LTR MaLR 52 123 -444 195 69 0 0 chr6 88823345 88823374 -93591868 + (A)n Simple_repeat Simple_repeat 1 29 0 1041 75 0 0 chr6 88823375 88823508 -93591734 + AluY SINE Alu 2 134 -177 2154 49 0 4 chr6 88823508 88823775 -93591467 + AluY SINE Alu 35 300 -11 2677 186 49 4 chr6 88823776 88824330 -93590912 + L1MC3 LINE L1 7207 7785 0 262 336 23 38 chr6 88824365 88824496 -93590746 - L2 LINE L2 -420 2894 2766 218 200 0 0 chr6 88824716 88824756 -93590486 + T-rich Low_complexity Low_complexity 2 41 0 2294 53 3 3 chr6 88824999 88825321 -93589921 - AluY SINE Alu 0 322 1 380 318 129 26 chr6 88826522 88826871 -93588371 - L1M4 LINE L1 -2145 4001 3617 394 273 12 50 chr6 88826927 88827094 -93588148 - MLT1I LTR MaLR -173 236 98 214 219 31 0 chr6 88827244 88827308 -93587934 + (TAGA)n Simple_repeat Simple_repeat 2 67 0 5472 65 20 20 chr6 88827539 88828299 -93586943 - L1PA7 LINE L1 -1 6153 5394 697 63 0 0 chr6 88828302 88828397 -93586845 + L1P LINE L1 2621 2715 -3431 1377 146 0 42 chr6 88828397 88828676 -93586566 - AluSx SINE Alu 0 324 56 17050 107 25 11 chr6 88828676 88829644 -93585598 + L1P LINE L1 2707 3660 -2486 234 0 0 0 chr6 88829644 88829670 -93585572 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 17050 107 25 11 chr6 88829670 88831358 -93583884 + L1P LINE L1 3660 5400 -746 372 371 7 0 chr6 88831506 88831649 -93583593 + MIR SINE MIR 8 151 -111 909 234 82 0 chr6 88832578 88832835 -93582407 + MER63 DNA MER1_type 732 1009 -53 25 0 0 0 chr6 88833217 88833242 -93582000 + AT_rich Low_complexity Low_complexity 1 25 0 579 173 22 0 chr6 88833432 88833571 -93581671 + GA-rich Low_complexity Low_complexity 3 144 0 1141 104 0 11 chr6 88833609 88833791 -93581451 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3833 187 171 26 chr6 88833893 88835022 -93580220 - MER52A LTR ERV1 -399 1356 1 245 197 15 0 chr6 88835148 88835214 -93580028 + GA-rich Low_complexity Low_complexity 3 69 0 292 333 35 0 chr6 88835301 88835388 -93579854 + MIR3 SINE MIR 98 187 -21 21 0 0 0 chr6 88835456 88835477 -93579765 + AT_rich Low_complexity Low_complexity 1 21 0 228 358 53 32 chr6 88835514 88835799 -93579443 + L2 LINE L2 1732 2022 -1292 300 111 0 0 chr6 88835839 88835884 -93579358 + (A)n Simple_repeat Simple_repeat 1 45 0 13493 201 23 12 chr6 88837206 88837255 -93577987 + L1M4c LINE L1 2101 2148 -4234 812 65 9 0 chr6 88837255 88837362 -93577880 + L1PA6 LINE L1 6036 6143 -11 195 42 0 0 chr6 88837363 88837387 -93577855 + (TA)n Simple_repeat Simple_repeat 1 24 0 13493 201 23 12 chr6 88837387 88839019 -93576223 + L1M4c LINE L1 2148 3841 -2541 6975 63 0 0 chr6 88839019 88840077 -93575165 - L1PA6 LINE L1 -2 6152 5095 13493 201 23 12 chr6 88840077 88841574 -93573668 + L1PA6 LINE L1 3841 5320 -1062 6182 197 27 10 chr6 88841573 88842414 -93572828 + L1MA9 LINE L1 3545 4420 -1726 * 2131 85 4 4 chr6 88842414 88842731 -93572511 + AluSx SINE Alu 1 317 0 6182 197 27 10 chr6 88842731 88843231 -93572011 + L1MA9 LINE L1 4420 4910 -1236 1222 238 54 65 chr6 88843233 88843661 -93571581 - MLT2B3 LTR ERVL 0 554 132 3571 157 30 11 chr6 88843664 88843896 -93571346 + L1MA9 LINE L1 5408 5634 -678 408 40 0 0 chr6 88843896 88843946 -93571296 + (TA)n Simple_repeat Simple_repeat 1 50 0 189 0 0 0 chr6 88843945 88843966 -93571276 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 3571 157 30 11 chr6 88843946 88844394 -93570848 + L1MA9 LINE L1 5634 6081 -231 516 173 48 0 chr6 88844398 88844502 -93570740 + L1MA9 LINE L1 6182 6290 -22 28 22 0 22 chr6 88844566 88844593 -93570649 + AT_rich Low_complexity Low_complexity 1 28 -17 1558 201 0 24 chr6 88844593 88844886 -93570356 + AluJo SINE Alu 5 290 -22 28 22 0 22 chr6 88844886 88844904 -93570338 + AT_rich Low_complexity Low_complexity 28 45 0 221 109 22 0 chr6 88844916 88844962 -93570280 + (TA)n Simple_repeat Simple_repeat 1 47 0 2120 101 0 3 chr6 88845640 88845926 -93569316 + AluSc SINE Alu 15 299 -10 411 271 30 38 chr6 88847692 88847825 -93567417 - L2 LINE L2 0 3313 3182 2519 207 37 19 chr6 88848189 88848730 -93566512 - L1MB5 LINE L1 -14 6396 5846 4450 236 44 30 chr6 88848764 88850440 -93564802 - L1MB5 LINE L1 -2472 3910 2195 437 202 28 0 chr6 88850437 88850546 -93564696 - L1MA5 LINE L1 0 6300 6189 * 285 315 0 0 chr6 88850594 88850686 -93564556 - L1ME2 LINE L1 -42 6122 6031 25 51 0 0 chr6 88851278 88851317 -93563925 + AT_rich Low_complexity Low_complexity 1 39 0 3162 93 20 2 chr6 88853578 88854038 -93561204 + L1PA13 LINE L1 5694 6161 -2 12349 27 1 0 chr6 88854856 88856348 -93558894 - L1PA4 LINE L1 -1940 4206 2714 9660 41 0 0 chr6 88856348 88858305 -93556937 + L1PA4 LINE L1 4196 6152 -3 297 308 113 2 chr6 88859290 88859548 -93555694 + L2 LINE L2 2705 3038 -275 1647 277 135 4 chr6 88859588 88860100 -93555142 + Zaphod DNA AcHobo 28 606 -3425 2222 239 51 28 chr6 88860181 88860908 -93554334 + Zaphod DNA AcHobo 3287 4030 -1 235 338 56 0 chr6 88861189 88861331 -93553911 - MIR SINE MIR -26 236 87 228 85 85 0 chr6 88861748 88861807 -93553435 + T-rich Low_complexity Low_complexity 1 64 0 415 282 149 21 chr6 88862884 88863072 -93552170 + MIR SINE MIR 46 257 -5 236 422 46 19 chr6 88863615 88863982 -93551260 - L2 LINE L2 -340 2974 2598 740 104 0 0 chr6 88864013 88864119 -93551123 - AluSp/q SINE Alu -2 311 206 243 121 52 0 chr6 88865599 88865657 -93549585 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 204 213 28 37 chr6 88865657 88865765 -93549477 + (TATAA)n Simple_repeat Simple_repeat 3 109 0 236 120 65 11 chr6 88865787 88865879 -93549363 + (TA)n Simple_repeat Simple_repeat 2 98 0 324 0 0 0 chr6 88866252 88866288 -93548954 + (CA)n Simple_repeat Simple_repeat 2 37 0 31 0 0 0 chr6 88866740 88866771 -93548471 + AT_rich Low_complexity Low_complexity 1 31 0 240 86 0 0 chr6 88868533 88868568 -93546674 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 475 312 40 30 chr6 88869053 88869255 -93545987 + LTR67 LTR ERVL 354 557 0 21 36 0 0 chr6 88869350 88869378 -93545864 + AT_rich Low_complexity Low_complexity 1 28 0 252 250 110 0 chr6 88869382 88869482 -93545760 + L2 LINE L2 3116 3226 -87 195 245 85 64 chr6 88869613 88869707 -93545535 + MIR SINE MIR 167 262 0 237 268 0 14 chr6 88869718 88869789 -93545453 + (TA)n Simple_repeat Simple_repeat 2 71 0 692 287 46 10 chr6 88870081 88870276 -93544966 + MIR SINE MIR 14 215 -47 22 0 0 0 chr6 88870586 88870608 -93544634 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr6 88871014 88871070 -93544172 + AT_rich Low_complexity Low_complexity 1 56 0 501 120 52 4 chr6 88871708 88871820 -93543422 - L1MA7 LINE L1 -8 6304 6183 238 363 65 0 chr6 88871982 88872106 -93543136 - MIR SINE MIR -23 239 108 1187 189 37 88 chr6 88872616 88873023 -93542219 - Charlie5 DNA MER1_type 0 2619 2234 541 195 53 9 chr6 88873029 88873142 -93542100 - MER3 DNA MER1_type -45 164 47 259 109 22 0 chr6 88873208 88873254 -93541988 + MADE1 DNA Mariner 1 47 -33 351 317 90 36 chr6 88873962 88874129 -93541113 - MIR SINE MIR -26 236 61 654 345 97 50 chr6 88874133 88875016 -93540226 + L3 LINE CR1 634 1558 -19 207 0 0 0 chr6 88875772 88875795 -93539447 + (A)n Simple_repeat Simple_repeat 1 23 0 258 274 0 27 chr6 88876322 88876395 -93538847 + CT-rich Low_complexity Low_complexity 2 72 0 24 0 0 0 chr6 88876589 88876613 -93538629 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 88879185 88879207 -93536035 + AT_rich Low_complexity Low_complexity 1 22 0 262 286 36 0 chr6 88879589 88879673 -93535569 + GA-rich Low_complexity Low_complexity 2 88 0 21 36 0 0 chr6 88881385 88881413 -93533829 + AT_rich Low_complexity Low_complexity 1 28 0 1983 153 0 0 chr6 88881418 88881706 -93533536 + AluSx SINE Alu 1 288 -24 24 0 0 0 chr6 88882554 88882578 -93532664 + AT_rich Low_complexity Low_complexity 1 24 0 360 208 13 39 chr6 88882713 88882790 -93532452 + Tigger5 DNA MER2_type 1 75 -2248 * 1146 195 21 17 chr6 88882784 88883025 -93532217 + Tigger5 DNA MER2_type 2077 2318 -5 1886 271 67 17 chr6 88883085 88883822 -93531420 + L1M3d LINE L1 6 1091 -5562 5068 253 47 26 chr6 88883939 88885529 -93529713 + L1M3de LINE L1 865 2078 -4610 887 123 0 0 chr6 88885527 88885665 -93529577 + L1MA2 LINE L1 6075 6212 -92 * 3101 181 11 47 chr6 88885665 88886389 -93528853 + L1MA6 LINE L1 5601 6298 -2 430 318 108 40 chr6 88886540 88886939 -93528303 + L1ME4a LINE L1 5527 5952 -169 336 188 47 23 chr6 88886957 88887085 -93528157 + (TA)n Simple_repeat Simple_repeat 2 132 0 1279 227 57 52 chr6 88887129 88887517 -93527725 + MLT1B LTR MaLR 1 390 0 236 312 28 28 chr6 88887540 88887681 -93527561 + L1MC/D LINE L1 5707 5847 -1961 32 26 0 0 chr6 88887909 88887948 -93527294 + AT_rich Low_complexity Low_complexity 1 39 0 287 158 18 18 chr6 88887979 88888036 -93527206 - tRNA-Met-e tRNA tRNA -17 58 2 4631 171 39 63 chr6 88888036 88890109 -93525133 + L1PA16 LINE L1 4121 6165 -1 22 94 0 0 chr6 88890109 88890173 -93525069 + AT_rich Low_complexity Low_complexity 1 64 0 913 249 46 31 chr6 88890270 88890595 -93524647 - L1ME3A LINE L1 -1 6169 5840 1270 214 56 45 chr6 88890775 88891134 -93524108 + MLT1A1 LTR MaLR 1 363 -2 1157 174 17 39 chr6 88891852 88892082 -93523160 + AluJb SINE Alu 49 273 -39 209 266 31 0 chr6 88892090 88892154 -93523088 + L2 LINE L2 3175 3240 -32 463 206 7 59 chr6 88892298 88892434 -93522808 - L1MC4 LINE L1 0 8042 7914 25 31 0 0 chr6 88892496 88892528 -93522714 + AT_rich Low_complexity Low_complexity 1 32 0 745 261 60 15 chr6 88892541 88892800 -93522442 - L1MC4 LINE L1 -158 7884 7494 518 206 9 0 chr6 88893443 88893550 -93521692 + L1M4 LINE L1 4132 4239 -1907 1189 203 100 43 chr6 88893562 88893594 -93521648 + L1M4 LINE L1 5254 5283 -895 1916 125 14 4 chr6 88893594 88893910 -93521332 - AluSg SINE Alu 0 319 1 1189 203 100 43 chr6 88893910 88894225 -93521017 + L1M4 LINE L1 5283 5622 -556 336 130 0 0 chr6 88894236 88894305 -93520937 + (TA)n Simple_repeat Simple_repeat 2 70 0 1464 255 55 31 chr6 88894315 88894429 -93520813 + L1MDa LINE L1 2426 2536 -4004 2049 125 3 0 chr6 88894429 88894718 -93520524 + AluSc SINE Alu 1 290 -19 1464 255 55 31 chr6 88894718 88895236 -93520006 + L1MDa LINE L1 2536 3076 -3464 325 158 18 0 chr6 88895281 88895338 -93519904 - L1M4 LINE L1 -2570 3576 3519 332 138 31 0 chr6 88895341 88895406 -93519836 + L1MD1 LINE L1 6174 6240 -2 201 108 0 0 chr6 88895558 88895595 -93519647 + (A)n Simple_repeat Simple_repeat 1 37 0 1635 112 61 54 chr6 88895803 88896098 -93519144 - AluSx SINE Alu -15 297 1 374 330 173 36 chr6 88896231 88896670 -93518572 + L2 LINE L2 2228 2726 -588 708 246 41 0 chr6 88896905 88897076 -93518166 - MER45A DNA AcHobo 0 178 1 23 54 0 0 chr6 88897405 88897442 -93517800 + AT_rich Low_complexity Low_complexity 1 37 0 1234 195 0 0 chr6 88897442 88897657 -93517585 - AluJb SINE Alu -8 304 90 597 345 16 9 chr6 88897663 88897979 -93517263 - L1MCc LINE L1 -4974 1449 1132 952 310 45 40 chr6 88898376 88898821 -93516421 - L1MCc LINE L1 -5954 469 23 404 63 63 11 chr6 88900090 88900185 -93515057 + (TA)n Simple_repeat Simple_repeat 2 101 0 324 122 0 0 chr6 88900417 88900466 -93514776 + Alu SINE Alu 246 294 -6 23 0 0 0 chr6 88900474 88900497 -93514745 + AT_rich Low_complexity Low_complexity 1 23 0 559 223 33 0 chr6 88901690 88901811 -93513431 + FLAM_C SINE Alu 1 125 -8 330 26 0 0 chr6 88903078 88903117 -93512125 + (TG)n Simple_repeat Simple_repeat 2 40 0 2509 65 0 0 chr6 88904353 88904663 -93510579 + AluY SINE Alu 2 311 0 849 312 105 20 chr6 88904720 88905360 -93509882 - L2 LINE L2 -5 3308 2601 240 35 0 0 chr6 88905782 88905811 -93509431 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7335 53 3 0 chr6 88906251 88907945 -93507297 - L1PA5 LINE L1 -2 6152 4455 5807 85 2 14 chr6 88908004 88908793 -93506449 + LTR17 LTR ERV1 1 780 0 21170 57 14 10 chr6 88908793 88914602 -93500640 + HERV17 LTR ERV1 1 6019 -2607 269 103 0 0 chr6 88914595 88914634 -93500608 + HERV17 LTR ERV1 7510 7548 -1078 * 2376 62 0 0 chr6 88914624 88914916 -93500326 + HERV17 LTR ERV1 8335 8626 0 599 56 0 0 chr6 88914916 88914988 -93500254 + LTR17 LTR ERV1 1 72 -708 2550 105 60 19 chr6 88914988 88915418 -93499824 - LTR7 LTR ERV1 -2 448 1 2456 85 59 13 chr6 88915418 88915793 -93499449 - HERVH LTR ERV1 0 7713 7322 1349 133 17 17 chr6 88915791 88916024 -93499218 - HERVH LTR ERV1 -1894 5819 5587 * 1040 8 0 0 chr6 88916051 88916171 -93499071 - L1PA3 LINE L1 -1101 5045 4926 * 7537 21 0 8 chr6 88916167 88917262 -93497980 + L1PA3 LINE L1 5050 6135 -20 4167 143 0 2 chr6 88917270 88917900 -93497342 - HERVH LTR ERV1 -2597 5116 4488 20883 85 114 86 chr6 88917902 88921785 -93493457 - HERVH LTR ERV1 -3720 3993 1 2632 93 58 21 chr6 88921787 88922219 -93493023 - LTR7 LTR ERV1 -2 448 1 5368 85 4 15 chr6 88922219 88922938 -93492304 + LTR17 LTR ERV1 66 776 -4 191 303 0 50 chr6 88922938 88923037 -93492205 - L2 LINE L2 -669 2645 2552 4645 143 9 0 chr6 88923079 88923717 -93491525 - L1PA16 LINE L1 -9 6157 5483 180 0 0 0 chr6 88923717 88923737 -93491505 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4645 143 9 0 chr6 88923737 88924055 -93491187 - L1PA16 LINE L1 -683 5483 5169 212 338 154 30 chr6 88924082 88924316 -93490926 - L2 LINE L2 -785 2529 2267 23 0 0 0 chr6 88925167 88925190 -93490052 + AT_rich Low_complexity Low_complexity 1 23 0 185 283 33 17 chr6 88925583 88925643 -93489599 - MIR SINE MIR -138 124 64 289 351 21 52 chr6 88925913 88926104 -93489138 + MIR3 SINE MIR 9 193 -15 202 229 0 36 chr6 88927990 88928073 -93487169 + CT-rich Low_complexity Low_complexity 1 80 0 327 267 50 10 chr6 88928148 88928249 -93486993 + L2 LINE L2 3208 3312 -1 409 273 22 50 chr6 88928340 88928479 -93486763 + MER5A DNA MER1_type 24 158 -31 1559 157 75 77 chr6 88928557 88928933 -93486309 - THE1C LTR MaLR 0 375 1 2603 208 24 11 chr6 88930253 88930796 -93484446 - MER89 LTR ERV1 -9 550 1 410 305 9 0 chr6 88930806 88930911 -93484331 + MER5A DNA MER1_type 4 109 -80 32 43 0 0 chr6 88932239 88932285 -93482957 + AT_rich Low_complexity Low_complexity 1 46 0 210 237 34 0 chr6 88934337 88934396 -93480846 + (CATA)n Simple_repeat Simple_repeat 4 64 0 279 0 0 0 chr6 88935044 88935075 -93480167 + (A)n Simple_repeat Simple_repeat 1 31 0 7725 21 0 0 chr6 88936087 88937014 -93478228 - L1PA3 LINE L1 0 6155 5230 1741 28 0 0 chr6 88937019 88937233 -93478009 + L1PA3 LINE L1 5022 5235 -911 358 349 26 47 chr6 88938637 88938829 -93476413 + MER5A DNA MER1_type 2 189 0 1733 189 0 10 chr6 88938885 88939181 -93476061 + AluJb SINE Alu 6 298 -14 514 328 108 56 chr6 88939878 88940616 -93474626 - L3 LINE CR1 -111 1466 690 295 268 47 111 chr6 88940913 88941148 -93474094 - L2 LINE L2 0 3313 3094 1067 228 100 28 chr6 88944093 88944413 -93470829 + MER2 DNA MER2_type 2 344 -1 22 70 0 0 chr6 88944906 88944949 -93470293 + AT_rich Low_complexity Low_complexity 1 43 0 9480 116 9 7 chr6 88945199 88946623 -93468619 + L1PA8A LINE L1 3942 5361 -770 2062 116 3 20 chr6 88946623 88946925 -93468317 + AluSc SINE Alu 1 297 -12 9480 116 9 7 chr6 88946925 88947666 -93467576 + L1PA8A LINE L1 5361 6110 -21 189 0 0 0 chr6 88947666 88947687 -93467555 + (TTG)n Simple_repeat Simple_repeat 2 22 0 9480 116 9 7 chr6 88947687 88947708 -93467534 + L1PA8A LINE L1 6110 6129 -2 294 331 0 0 chr6 88949444 88949586 -93465656 - L1MCa LINE L1 -5216 829 688 184 29 29 29 chr6 88949845 88949879 -93465363 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 415 303 116 41 chr6 88949887 88950363 -93464879 - L1MCa LINE L1 -5552 493 42 1590 92 5 5 chr6 88951189 88951406 -93463836 + AluSq SINE Alu 94 310 -3 24 0 0 0 chr6 88951628 88951652 -93463590 + AT_rich Low_complexity Low_complexity 1 24 0 303 155 0 0 chr6 88951666 88951724 -93463518 - L1MA4A LINE L1 -4 6299 6242 871 294 168 12 chr6 88954538 88955130 -93460112 + L2 LINE L2 2614 3313 0 32 43 0 0 chr6 88955524 88955570 -93459672 + AT_rich Low_complexity Low_complexity 1 46 0 250 335 85 40 chr6 88955581 88955805 -93459437 + MIR SINE MIR 12 245 -17 246 62 0 0 chr6 88956711 88956743 -93458499 + (TA)n Simple_repeat Simple_repeat 1 32 0 26 50 0 0 chr6 88956818 88956858 -93458384 + AT_rich Low_complexity Low_complexity 1 40 0 330 26 0 0 chr6 88957044 88957083 -93458159 + (CA)n Simple_repeat Simple_repeat 2 40 0 742 247 40 58 chr6 88957096 88957371 -93457871 + L1MD3 LINE L1 6677 6946 -1049 * 1283 197 24 73 chr6 88957346 88957716 -93457526 + L1MD3 LINE L1 7634 7985 -10 376 380 0 0 chr6 88958083 88958196 -93457046 - L2 LINE L2 -6 3266 3154 889 131 110 0 chr6 88958765 88958956 -93456286 - L1MA3 LINE L1 0 6305 6094 3517 199 21 21 chr6 88958972 88959792 -93455450 - L1 LINE L1 -1608 4538 3719 812 267 14 18 chr6 88959998 88960215 -93455027 + MIR SINE MIR 47 262 0 602 262 78 5 chr6 88961106 88961297 -93453945 - MIR SINE MIR -5 257 53 321 300 41 93 chr6 88961886 88962229 -93453013 + L1M4 LINE L1 3775 4099 -2047 1397 147 119 78 chr6 88962267 88962627 -93452615 + MSTA LTR MaLR 1 428 0 8467 161 22 43 chr6 88962629 88964241 -93451001 + MSTA-int LTR MaLR 3 1579 -1 840 170 241 27 chr6 88964242 88964415 -93450827 + MSTA LTR MaLR 1 136 -292 219 36 0 0 chr6 88964415 88964443 -93450799 + (TC)n Simple_repeat Simple_repeat 1 28 0 840 170 241 27 chr6 88964443 88964493 -93450749 + MSTA LTR MaLR 136 272 -156 321 303 34 11 chr6 88964734 88964909 -93450333 + L1M4 LINE L1 4443 4621 -1525 348 243 81 27 chr6 88965697 88965808 -93449434 + L2 LINE L2 3196 3312 -1 213 125 0 47 chr6 88966087 88966151 -93449091 + (TA)n Simple_repeat Simple_repeat 1 61 0 23 0 0 0 chr6 88966152 88966175 -93449067 + AT_rich Low_complexity Low_complexity 1 23 0 423 98 0 0 chr6 88966554 88966615 -93448627 + (TA)n Simple_repeat Simple_repeat 2 62 0 13459 149 48 12 chr6 88966823 88969157 -93446085 + Tigger1 DNA MER2_type 2 2418 0 2232 91 0 3 chr6 88969252 88969548 -93445694 - AluY SINE Alu -16 295 1 36 53 0 0 chr6 88969963 88970020 -93445222 + AT_rich Low_complexity Low_complexity 1 57 0 362 21 21 0 chr6 88970581 88970628 -93444614 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 7088 32 30 2 chr6 88970712 88972328 -93442914 + L1PA2 LINE L1 4514 6155 0 2729 48 70 0 chr6 88972353 88972708 -93442534 + L1PA5 LINE L1 5770 6149 -5 2138 93 0 0 chr6 88974098 88974396 -93440846 - AluY SINE Alu 0 308 11 954 201 4 21 chr6 88974522 88974758 -93440484 + L1MA4 LINE L1 5931 6158 -142 209 347 49 42 chr6 88976019 88976163 -93439079 + MER5A DNA MER1_type 38 182 -7 359 291 42 42 chr6 88977627 88977816 -93437426 + L1M4 LINE L1 2916 3104 -3042 339 279 9 18 chr6 88977860 88977971 -93437271 - MIR SINE MIR -42 220 111 3041 20 0 0 chr6 88978170 88978520 -93436722 + L1PA4 LINE L1 5805 6154 -1 34 72 0 0 chr6 88978722 88978791 -93436451 + AT_rich Low_complexity Low_complexity 1 69 0 1301 104 0 0 chr6 88978792 88978975 -93436267 - L1PA14 LINE L1 -17 6144 5962 303 203 0 0 chr6 88979564 88979633 -93435609 + GA-rich Low_complexity Low_complexity 4 72 0 310 327 18 36 chr6 88979779 88979910 -93435332 + HAL1 LINE L1 764 893 -1614 7708 22 1 0 chr6 88979910 88981378 -93433864 + L1PA4 LINE L1 4687 6155 0 310 327 18 36 chr6 88981378 88981414 -93433828 + HAL1 LINE L1 893 928 -1579 486 266 137 38 chr6 88981507 88981682 -93433560 + L1MC4 LINE L1 7710 7866 -176 1429 226 40 0 chr6 88981682 88982009 -93433233 - MER2 DNA MER2_type -4 340 1 333 47 0 0 chr6 88982010 88982053 -93433189 + (CA)n Simple_repeat Simple_repeat 2 44 0 486 266 137 38 chr6 88982053 88982168 -93433074 + L1MC4 LINE L1 7865 8031 -11 920 286 143 28 chr6 88982195 88982957 -93432285 + HAL1 LINE L1 1658 2507 0 331 299 111 7 chr6 88983442 88983586 -93431656 + L1M4 LINE L1 3589 3747 -2399 922 218 99 37 chr6 88983640 88984002 -93431240 - MSTC LTR MaLR 0 428 3 364 322 104 36 chr6 88984268 88984649 -93430593 - L2 LINE L2 -48 3265 2779 198 91 0 0 chr6 88985463 88985496 -93429746 + (TG)n Simple_repeat Simple_repeat 2 34 0 343 332 42 23 chr6 88985778 88985992 -93429250 - LTR16A LTR ERVL -88 362 145 1908 146 63 0 chr6 88986320 88986669 -93428573 - Tigger1 DNA MER2_type -3 2415 2045 198 0 0 0 chr6 88987222 88987244 -93427998 + (A)n Simple_repeat Simple_repeat 1 22 0 282 358 33 0 chr6 88987244 88987364 -93427878 - LTR16A LTR ERVL -323 127 4 388 335 81 25 chr6 88987379 88987808 -93427434 + L1M4 LINE L1 4942 5403 -743 21 57 0 0 chr6 88987914 88987949 -93427293 + AT_rich Low_complexity Low_complexity 1 35 0 40 37 0 0 chr6 88988032 88988086 -93427156 + AT_rich Low_complexity Low_complexity 1 54 0 203 332 91 64 chr6 88988574 88988794 -93426448 + L2 LINE L2 2834 3059 -213 219 277 0 0 chr6 88989398 88989445 -93425797 + L2 LINE L2 3224 3270 -2 23 33 0 0 chr6 88989860 88989890 -93425352 + AT_rich Low_complexity Low_complexity 1 30 0 206 192 90 103 chr6 88990083 88990161 -93425081 + MIR SINE MIR 156 232 -30 355 82 0 0 chr6 88991566 88991615 -93423627 - MADE1 DNA Mariner 0 80 32 306 302 38 9 chr6 88991916 88992022 -93423220 + L1ME2 LINE L1 56 164 -5906 232 255 21 32 chr6 88992134 88992228 -93423014 + L1ME2 LINE L1 5011 5103 -977 * 1581 223 112 19 chr6 88992210 88992642 -93422600 + L1ME2 LINE L1 5313 5703 -395 1859 156 58 17 chr6 88992642 88993002 -93422240 + THE1C LTR MaLR 1 375 0 9190 134 44 38 chr6 88993002 88994572 -93420670 + THE1C-int LTR MaLR 1 1580 0 2099 127 47 25 chr6 88994574 88994937 -93420305 + THE1C LTR MaLR 5 375 0 1581 223 112 19 chr6 88994937 88995038 -93420204 + L1ME2 LINE L1 5703 5900 -198 363 165 52 10 chr6 88995180 88995277 -93419965 + L1MA10 LINE L1 6215 6315 -19 457 70 0 0 chr6 88995282 88995339 -93419903 - Alu SINE Alu -16 296 240 1128 215 123 38 chr6 88995723 88996065 -93419177 + MLT2B1 LTR ERVL 16 419 -45 303 28 0 0 chr6 88996065 88996101 -93419141 + (TG)n Simple_repeat Simple_repeat 2 37 0 1128 215 123 38 chr6 88996101 88996151 -93419091 + MLT2B1 LTR ERVL 419 463 -1 225 0 0 0 chr6 88996716 88996741 -93418501 + (A)n Simple_repeat Simple_repeat 1 25 0 262 304 0 0 chr6 88997626 88997682 -93417560 - MIR3 SINE MIR -18 190 135 10018 192 43 32 chr6 88997974 88998172 -93417070 - L1MA4A LINE L1 -5 7000 6806 459 0 0 0 chr6 88998172 88998223 -93417019 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2037 56 8 4 chr6 88998223 88998475 -93416767 - AluY SINE Alu -28 283 31 10018 192 43 32 chr6 88998475 88998672 -93416570 - L1MA4A LINE L1 -199 6806 6613 676 227 0 0 chr6 88998672 88998791 -93416451 - FLAM_A SINE Alu -14 119 1 10018 192 43 32 chr6 88998791 89001900 -93413342 - L1MA4A LINE L1 -392 6613 3462 14202 40 1 1 chr6 89001900 89004409 -93410833 - L1PA3 LINE L1 -3 6152 3648 29517 44 1 3 chr6 89004413 89008053 -93407189 + L1PA3 LINE L1 11 3642 -2504 607 186 51 26 chr6 89008050 89008206 -93407036 - L1MA4A LINE L1 -3354 3494 3335 * 381 22 0 0 chr6 89008223 89008269 -93406973 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4624 186 13 26 chr6 89008270 89009846 -93405396 - L1PB4 LINE L1 -12 6144 4581 * 8825 195 37 12 chr6 89009837 89011796 -93403446 - L1MA4A LINE L1 -3525 3323 1414 7092 57 26 0 chr6 89011796 89012670 -93402572 + MER11D LTR ERVK 1 897 0 8825 195 37 12 chr6 89012670 89012834 -93402408 - L1MA4A LINE L1 -5434 1414 1256 5023 91 0 0 chr6 89012834 89013494 -93401748 + PABL_A LTR ERV1 1 660 0 8825 195 37 12 chr6 89013494 89014447 -93400795 - L1MA4A LINE L1 -5592 1256 154 413 348 92 35 chr6 89015155 89015503 -93399739 + L2 LINE L2 2945 3312 -1 28 61 0 0 chr6 89015607 89015656 -93399586 + AT_rich Low_complexity Low_complexity 1 49 0 208 70 47 58 chr6 89015681 89015767 -93399475 + (TAAA)n Simple_repeat Simple_repeat 4 88 0 503 268 125 43 chr6 89019139 89019392 -93395850 + Tigger8 DNA MER2_type 40 320 -346 2271 85 0 3 chr6 89019392 89019708 -93395534 + AluY SINE Alu 1 311 0 503 268 125 43 chr6 89019708 89019734 -93395508 + Tigger8 DNA MER2_type 320 342 -324 44 80 0 0 chr6 89019890 89019990 -93395252 + AT_rich Low_complexity Low_complexity 1 100 0 206 433 31 0 chr6 89020156 89020283 -93394959 - L2 LINE L2 -252 3020 2890 225 329 0 13 chr6 89021615 89021691 -93393551 + MER5B DNA MER1_type 3 77 -101 30 45 0 0 chr6 89021933 89021977 -93393265 + AT_rich Low_complexity Low_complexity 1 44 0 223 404 15 7 chr6 89021981 89022117 -93393125 + MER5A DNA MER1_type 53 189 0 445 352 100 14 chr6 89022231 89022651 -93392591 + L2 LINE L2 2858 3313 0 371 411 40 21 chr6 89023647 89024286 -93390956 + L2 LINE L2 2622 3271 -1 274 312 0 11 chr6 89024286 89024379 -93390863 + GA-rich Low_complexity Low_complexity 1 92 0 193 314 159 41 chr6 89024543 89024833 -93390409 - L2 LINE L2 -2 3270 2947 1329 113 29 71 chr6 89025270 89025510 -93389732 - MER30 DNA MER1_type 0 230 1 507 337 0 22 chr6 89026385 89026569 -93388673 - MIR SINE MIR -49 213 34 21 71 0 0 chr6 89027276 89027318 -93387924 + AT_rich Low_complexity Low_complexity 1 42 0 2066 182 3 3 chr6 89028838 89029200 -93386042 + MLT1A1 LTR MaLR 3 364 -1 213 175 0 0 chr6 89029599 89029639 -93385603 + (TA)n Simple_repeat Simple_repeat 1 40 0 2474 57 0 0 chr6 89029709 89030006 -93385236 + AluY SINE Alu 1 297 -14 468 225 92 69 chr6 89031286 89031459 -93383783 - MER5B DNA MER1_type 0 178 2 294 279 216 0 chr6 89031597 89031708 -93383534 - MER5A DNA MER1_type -3 186 52 5418 165 15 17 chr6 89031713 89033352 -93381890 - L1PB1 LINE L1 -3 6148 4513 * 6871 200 15 6 chr6 89033350 89034852 -93380390 + L1PB1 LINE L1 2970 4484 -1662 241 315 0 0 chr6 89034999 89035072 -93380170 + L1ME LINE L1 5688 5760 -361 30 59 0 0 chr6 89035283 89035334 -93379908 + AT_rich Low_complexity Low_complexity 1 51 0 304 136 15 15 chr6 89035616 89035682 -93379560 + (TA)n Simple_repeat Simple_repeat 1 66 0 373 328 29 35 chr6 89036373 89036544 -93378698 - MER5B DNA MER1_type -8 170 1 493 136 242 8 chr6 89037172 89037304 -93377938 + MER53 DNA DNA 10 172 -17 180 0 0 0 chr6 89037304 89037324 -93377918 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr6 89037472 89037493 -93377749 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 89037815 89037837 -93377405 + AT_rich Low_complexity Low_complexity 1 22 0 272 252 26 97 chr6 89038224 89038379 -93376863 + L1ME LINE L1 5680 5823 -347 * 603 231 37 0 chr6 89038371 89038505 -93376737 + L1MC1 LINE L1 6189 6327 -6 19791 35 6 1 chr6 89038949 89041481 -93373761 - L1P2 LINE L1 -665 5490 2947 22 0 0 0 chr6 89041623 89041645 -93373597 + AT_rich Low_complexity Low_complexity 1 22 0 230 151 57 0 chr6 89041699 89041752 -93373490 + HSMAR2 DNA Mariner 217 272 -1030 232 56 83 0 chr6 89041753 89041789 -93373453 + L1P LINE L1 5159 5197 -949 4520 194 34 14 chr6 89042149 89043552 -93371690 - L1MA10 LINE L1 -105 6229 4794 6864 142 71 2 chr6 89043552 89044770 -93370472 - HSMAR2 DNA Mariner -1 1301 1 4520 194 34 14 chr6 89044770 89044792 -93370450 - L1MA10 LINE L1 -1540 4794 4774 280 259 50 98 chr6 89045188 89045628 -93369614 + L1MC1 LINE L1 4404 4822 -1324 265 163 11 43 chr6 89045629 89045721 -93369521 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 305 294 96 14 chr6 89045735 89045881 -93369361 + L1MC1 LINE L1 4916 5073 -1073 705 339 129 4 chr6 89046037 89046556 -93368686 + L1MC1 LINE L1 5254 5837 -1971 26 0 0 0 chr6 89046857 89046883 -93368359 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr6 89046902 89046929 -93368313 + AT_rich Low_complexity Low_complexity 1 27 0 1153 49 7 0 chr6 89046929 89047073 -93368169 - L1PA3 LINE L1 -3 6152 6008 1948 128 0 7 chr6 89047274 89047564 -93367678 + AluSx SINE Alu 1 288 -24 23 0 0 0 chr6 89048405 89048428 -93366814 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr6 89049272 89049301 -93365941 + (CA)n Simple_repeat Simple_repeat 2 30 0 307 311 0 0 chr6 89051246 89051320 -93363922 - L2 LINE L2 -1 3312 3239 246 32 0 0 chr6 89051326 89051357 -93363885 + (CA)n Simple_repeat Simple_repeat 2 32 0 383 290 95 46 chr6 89051511 89051794 -93363448 - L2 LINE L2 -6 3307 3011 534 201 78 26 chr6 89051796 89051950 -93363292 + L1MC1 LINE L1 6171 6332 -1 6027 37 0 1 chr6 89053408 89054138 -93361104 - L1PA4 LINE L1 -3 6152 5424 1948 28 4 0 chr6 89054138 89054416 -93360826 + L1PA4 LINE L1 5152 5430 -725 29 0 0 0 chr6 89054472 89054501 -93360741 + AT_rich Low_complexity Low_complexity 1 29 0 42 20 0 0 chr6 89054916 89054965 -93360277 + AT_rich Low_complexity Low_complexity 1 49 0 2946 256 24 52 chr6 89055335 89056185 -93359057 + MER21B LTR ERV1 13 838 -25 266 350 126 20 chr6 89056476 89056770 -93358472 + L2 LINE L2 1678 2002 -1312 5677 147 35 11 chr6 89056829 89058099 -93357143 + L1MA8 LINE L1 4988 6288 -3 1996 99 11 11 chr6 89058105 89058425 -93356817 + AluSx SINE Alu 1 320 0 817 319 83 74 chr6 89058438 89059561 -93355681 + L2 LINE L2 2131 3268 -4 277 238 133 70 chr6 89060782 89060925 -93354317 + MIR SINE MIR 105 256 -6 285 98 0 0 chr6 89062533 89062574 -93352668 + (TTG)n Simple_repeat Simple_repeat 2 42 0 279 0 0 0 chr6 89064343 89064374 -93350868 + (CA)n Simple_repeat Simple_repeat 2 32 0 1415 149 53 22 chr6 89064626 89065060 -93350182 + LTR54 LTR ERV1 1 510 0 237 333 0 0 chr6 89066610 89066676 -93348566 + L2 LINE L2 2988 3053 -219 490 289 69 102 chr6 89066940 89067491 -93347751 - HAL1 LINE L1 -1163 1344 812 2452 168 32 11 chr6 89067597 89068072 -93347170 - MER31A LTR ERV1 0 485 1 6086 119 6 31 chr6 89068255 89069209 -93346033 - THE1B-int LTR MaLR -650 930 1 2097 147 30 30 chr6 89069212 89069573 -93345669 - THE1B LTR MaLR -3 361 1 1660 131 111 40 chr6 89070600 89070950 -93344292 + THE1C LTR MaLR 1 375 0 222 37 0 0 chr6 89072274 89072301 -93342941 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 380 284 64 9 chr6 89072310 89072419 -93342823 + L2 LINE L2 3143 3257 -15 21 57 0 0 chr6 89073125 89073160 -93342082 + AT_rich Low_complexity Low_complexity 1 35 0 3405 147 47 9 chr6 89073409 89073907 -93341335 + L1MA4 LINE L1 5307 5836 -464 2061 140 0 3 chr6 89073907 89074214 -93341028 + AluSx SINE Alu 1 306 -6 3405 147 47 9 chr6 89074214 89074348 -93340894 + L1MA4 LINE L1 5836 5963 -337 9947 197 45 29 chr6 89074452 89074532 -93340710 - L1MA4A LINE L1 -105 6198 6121 1999 56 8 4 chr6 89074532 89074826 -93340416 - AluY SINE Alu 0 325 31 9947 197 45 29 chr6 89074826 89075023 -93340219 - L1MA4A LINE L1 -182 6121 5929 643 235 0 0 chr6 89075023 89075142 -93340100 - FLAM_A SINE Alu -14 119 1 9947 197 45 29 chr6 89075142 89078251 -93336991 - L1MA4A LINE L1 -374 5929 2760 9660 41 0 0 chr6 89078251 89080208 -93335034 - L1PA4 LINE L1 -3 6152 4196 * 21930 29 5 0 chr6 89080206 89083652 -93331590 + L1PA3 LINE L1 2712 6155 0 207 243 27 40 chr6 89083657 89083731 -93331511 - L2 LINE L2 -1558 1756 1684 27 0 0 0 chr6 89084196 89084223 -93331019 + AT_rich Low_complexity Low_complexity 1 27 0 246 159 0 72 chr6 89084223 89084292 -93330950 + (TACTG)n Simple_repeat Simple_repeat 1 64 0 249 155 0 42 chr6 89084292 89084363 -93330879 + (TA)n Simple_repeat Simple_repeat 1 68 0 220 349 72 43 chr6 89084453 89084662 -93330580 - L2 LINE L2 -2377 937 723 421 329 20 13 chr6 89084679 89084831 -93330411 - LTR16A LTR ERVL -190 260 108 369 372 7 2 chr6 89085042 89085236 -93330006 - MERVL LTR ERVL -147 5338 5145 643 350 66 31 chr6 89085374 89086068 -93329174 - MERVL LTR ERVL -703 4951 4216 1161 241 32 46 chr6 89086068 89086438 -93328804 + MLT1A1 LTR MaLR 1 365 0 643 350 66 31 chr6 89086438 89086589 -93328653 - MERVL LTR ERVL -1438 4216 4072 1669 211 31 6 chr6 89086685 89087041 -93328201 - MLT1A1 LTR MaLR 0 365 1 2389 228 21 17 chr6 89087042 89087564 -93327678 - MER74A LTR ERVL 0 558 35 403 302 13 6 chr6 89087645 89087804 -93327438 - MERVL LTR ERVL -1784 3980 3821 1095 286 107 66 chr6 89087852 89088672 -93326570 - MERVL LTR ERVL -2444 2552 1910 1201 344 58 26 chr6 89088701 89089554 -93325688 - MERVL LTR ERVL -3143 1853 912 1152 332 42 16 chr6 89089594 89090097 -93325145 - MERVL LTR ERVL -4171 825 310 408 287 72 14 chr6 89090253 89090476 -93324766 - L1ME LINE L1 -381 5740 5505 21 36 0 0 chr6 89090531 89090559 -93324683 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr6 89090810 89090836 -93324406 + (CA)n Simple_repeat Simple_repeat 1 26 0 359 257 86 53 chr6 89091786 89091938 -93323304 - MIR SINE MIR -4 258 102 38 22 0 0 chr6 89092109 89092154 -93323088 + AT_rich Low_complexity Low_complexity 1 45 0 245 100 0 80 chr6 89093718 89093768 -93321474 - MADE1 DNA Mariner -1 79 34 372 55 0 18 chr6 89093777 89093832 -93321410 + MADE1 DNA Mariner 27 80 0 194 268 51 134 chr6 89093838 89093995 -93321247 + MIR SINE MIR 11 154 -108 279 0 0 0 chr6 89094897 89094928 -93320314 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 309 73 45 chr6 89094928 89095038 -93320204 - MIR SINE MIR -75 187 75 282 29 0 0 chr6 89095268 89095303 -93319939 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 116 23 0 chr6 89095304 89095347 -93319895 + (TA)n Simple_repeat Simple_repeat 2 45 0 238 371 19 9 chr6 89095381 89095486 -93319756 + MIR SINE MIR 6 111 -151 2031 132 24 34 chr6 89095486 89095865 -93319377 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr6 89097577 89097601 -93317641 + AT_rich Low_complexity Low_complexity 1 24 0 42 20 0 0 chr6 89097790 89097839 -93317403 + AT_rich Low_complexity Low_complexity 1 49 0 3705 154 10 33 chr6 89098862 89099587 -93315655 + L1MA7 LINE L1 5577 6284 -7 226 370 127 23 chr6 89099649 89100082 -93315160 - L2 LINE L2 -1771 1543 1066 225 0 0 0 chr6 89100137 89100162 -93315080 + (TTG)n Simple_repeat Simple_repeat 2 26 0 319 385 22 11 chr6 89100210 89100389 -93314853 - MIR SINE MIR -34 228 48 212 176 20 0 chr6 89101883 89101900 -93313342 + (TTTA)n Simple_repeat Simple_repeat 2 17 -36 1925 167 55 0 chr6 89101900 89102230 -93313012 - MER7A DNA MER2_type 0 346 1 212 176 20 0 chr6 89102230 89102263 -93312979 + (TTTA)n Simple_repeat Simple_repeat 17 53 0 379 332 63 54 chr6 89103493 89103954 -93311288 - L2 LINE L2 -644 2670 2206 214 186 0 0 chr6 89104687 89104730 -93310512 + A-rich Low_complexity Low_complexity 1 43 0 2171 109 3 0 chr6 89104741 89105081 -93310161 + AluSg SINE Alu 1 310 0 650 271 125 9 chr6 89105390 89105695 -93309547 + MLT1F LTR MaLR 160 590 0 5262 225 25 20 chr6 89107528 89108479 -93306763 - L1 LINE L1 -1681 4465 3503 742 179 0 15 chr6 89108479 89108613 -93306629 - FLAM_C SINE Alu -1 132 1 5262 225 25 20 chr6 89108613 89109096 -93306146 - L1 LINE L1 -2643 3503 3024 * 5305 177 18 18 chr6 89109095 89109587 -93305655 + L1PA16 LINE L1 4470 4960 -1206 2210 106 67 17 chr6 89109587 89109944 -93305298 + THE1C LTR MaLR 1 375 0 9856 130 33 7 chr6 89109944 89111483 -93303759 + THE1C-int LTR MaLR 1 1580 0 2309 133 11 21 chr6 89111485 89111862 -93303380 + THE1C LTR MaLR 3 375 0 5305 177 18 18 chr6 89111862 89112257 -93302985 + L1PA16 LINE L1 4960 5353 -813 2028 112 0 67 chr6 89112257 89112587 -93302655 + AluSp SINE Alu 1 308 -5 5305 177 18 18 chr6 89112587 89113379 -93301863 + L1PA16 LINE L1 5353 6164 -2 203 262 16 0 chr6 89114171 89114232 -93301010 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 342 245 43 14 chr6 89114268 89114407 -93300835 + L1M4 LINE L1 2144 2286 -3860 28 71 0 0 chr6 89114649 89114705 -93300537 + AT_rich Low_complexity Low_complexity 1 56 0 448 313 83 26 chr6 89115697 89116240 -93299002 + L1MCa LINE L1 896 1469 -4957 1552 147 60 0 chr6 89116244 89116509 -93298733 - AluJb SINE Alu -17 295 15 329 291 74 85 chr6 89116525 89116714 -93298528 + L1MCa LINE L1 1650 1836 -4771 696 261 99 37 chr6 89116729 89117717 -93297525 + L1MCa LINE L1 1972 3107 -3319 673 173 0 0 chr6 89117727 89117854 -93297388 + FLAM_A SINE Alu 11 137 0 413 209 130 72 chr6 89117865 89118142 -93297100 + L1MCa LINE L1 3118 3410 -3016 1274 257 82 42 chr6 89118341 89119038 -93296204 + L1MCa LINE L1 3434 4158 -2268 658 150 24 0 chr6 89119239 89119366 -93295876 - L1PA12 LINE L1 -3628 3956 3827 3801 195 8 16 chr6 89119921 89120478 -93294764 - L1PA12 LINE L1 -3753 3831 3280 2305 99 3 6 chr6 89120478 89120790 -93294452 + AluSp SINE Alu 1 311 -2 3801 195 8 16 chr6 89120790 89121008 -93294234 - L1PA12 LINE L1 -4304 3280 3062 408 181 0 0 chr6 89121006 89121078 -93294164 - L1PA12 LINE L1 -7509 72 1 * 878 282 164 4 chr6 89121082 89121285 -93293957 + L1MCa LINE L1 4173 4342 -2084 2112 124 0 7 chr6 89121285 89121583 -93293659 + AluSc SINE Alu 1 296 -13 878 282 164 4 chr6 89121583 89121914 -93293328 + L1MCa LINE L1 4342 4793 -1633 710 215 61 14 chr6 89121903 89122117 -93293125 + L1MCa LINE L1 5061 5284 -1142 * 944 196 114 32 chr6 89122161 89122237 -93293005 + L1MEc LINE L1 14 82 -6314 186 43 0 0 chr6 89122237 89122260 -93292982 + (CAA)n Simple_repeat Simple_repeat 1 23 0 944 196 114 32 chr6 89122260 89122463 -93292779 + L1MEc LINE L1 82 316 -6080 234 128 0 0 chr6 89124972 89125011 -93290231 + (TA)n Simple_repeat Simple_repeat 1 39 0 210 268 0 14 chr6 89125022 89125093 -93290149 + (TA)n Simple_repeat Simple_repeat 1 70 0 281 324 81 11 chr6 89126337 89126489 -93288753 - MIR SINE MIR -64 144 19 246 128 0 0 chr6 89126913 89126952 -93288290 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr6 89127006 89127032 -93288210 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr6 89127381 89127403 -93287839 + (A)n Simple_repeat Simple_repeat 1 22 0 591 136 0 19 chr6 89127591 89127694 -93287548 - AluSg/x SINE Alu -16 296 196 485 219 32 24 chr6 89128483 89128606 -93286636 - L1MD3 LINE L1 -11 7984 7861 232 314 73 8 chr6 89129681 89129805 -93285437 + L2 LINE L2 3158 3289 -24 245 350 51 32 chr6 89130629 89130786 -93284456 - L2 LINE L2 -571 2743 2584 210 91 0 0 chr6 89130858 89130891 -93284351 + (A)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr6 89131278 89131301 -93283941 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 257 213 0 0 chr6 89132179 89132226 -93283016 + L2 LINE L2 3226 3272 0 326 349 71 44 chr6 89132333 89132480 -93282762 + MIR SINE MIR 3 162 -100 7386 34 1 0 chr6 89132480 89133395 -93281847 + L1PA4 LINE L1 5255 6170 0 326 349 71 44 chr6 89133395 89133498 -93281744 + MIR SINE MIR 162 261 -1 24 0 0 0 chr6 89136341 89136365 -93278877 + AT_rich Low_complexity Low_complexity 1 24 0 2066 142 0 0 chr6 89136453 89136748 -93278494 - AluSg SINE Alu -15 295 1 22 0 0 0 chr6 89137018 89137040 -93278202 + AT_rich Low_complexity Low_complexity 1 22 0 1866 195 109 33 chr6 89137050 89137537 -93277705 - L1MD2 LINE L1 -8 6351 5828 461 216 96 54 chr6 89137647 89137814 -93277428 - MER5A DNA MER1_type -15 174 1 313 226 68 16 chr6 89137972 89138163 -93277079 + L1MC/D LINE L1 5304 5499 -721 352 318 37 0 chr6 89138534 89138641 -93276601 - MIR SINE MIR 0 262 152 212 246 16 33 chr6 89138642 89138703 -93276539 - MIR SINE MIR 0 262 203 260 268 0 0 chr6 89138708 89138764 -93276478 - MIR SINE MIR 0 262 207 344 277 40 62 chr6 89139354 89139531 -93275711 - MIR SINE MIR -70 192 20 1998 191 43 41 chr6 89140643 89141104 -93274138 + MLT1C LTR MaLR 6 467 0 565 232 122 37 chr6 89141392 89141556 -93273686 - MER45A DNA AcHobo 0 178 1 251 354 49 14 chr6 89142862 89143006 -93272236 - HAL1b LINE L1 -652 696 548 23 68 0 0 chr6 89143105 89143149 -93272093 + AT_rich Low_complexity Low_complexity 1 44 0 652 263 33 11 chr6 89145554 89145824 -93269418 + L1M4 LINE L1 2201 2476 -3670 352 258 17 0 chr6 89145841 89145961 -93269281 + L1M4 LINE L1 5134 5255 -891 19258 68 2 0 chr6 89146382 89148862 -93266380 + L1P LINE L1 11 2495 -3651 803 227 19 0 chr6 89150015 89150169 -93265073 - MER5A DNA MER1_type 0 189 33 255 406 0 10 chr6 89151206 89151302 -93263940 + MIR3 SINE MIR 12 106 -102 436 314 25 0 chr6 89151342 89151463 -93263779 - L2 LINE L2 0 3313 3190 2286 97 3 3 chr6 89152062 89152361 -93262881 - AluSc SINE Alu -10 299 1 887 235 40 5 chr6 89152911 89153111 -93262131 + MER20 DNA MER1_type 9 215 -4 1594 218 200 6 chr6 89153113 89153858 -93261384 + L1MEc LINE L1 1762 2611 -3604 324 241 52 17 chr6 89153890 89154006 -93261236 + L1MEc LINE L1 2693 2812 -3403 31580 56 5 1 chr6 89154558 89159432 -93255810 - L1PA4 LINE L1 0 6155 1270 9100 40 6 0 chr6 89159540 89161445 -93253797 + L1PA5 LINE L1 4242 6154 0 1830 216 37 18 chr6 89161497 89161955 -93253287 + MLT1C LTR MaLR 1 467 0 2242 133 28 0 chr6 89162432 89162786 -93252456 - THE1B LTR MaLR 0 364 1 1417 106 0 0 chr6 89162786 89162984 -93252258 - THE1B-int LTR MaLR 0 1580 1383 * 2914 85 8 2 chr6 89162967 89163367 -93251875 - THE1B-int LTR MaLR -1178 402 1 2116 142 34 0 chr6 89163367 89163719 -93251523 - THE1B LTR MaLR 0 364 1 5076 46 17 0 chr6 89164005 89164636 -93250606 - L1PA7 LINE L1 -5 6149 5508 221 263 151 9 chr6 89164806 89164919 -93250323 + MIR SINE MIR 55 190 -52 3793 158 31 31 chr6 89165080 89165623 -93249619 + L1MC2 LINE L1 5564 6109 -235 1958 116 7 7 chr6 89165623 89165916 -93249326 + AluY SINE Alu 14 306 -5 3793 158 31 31 chr6 89165916 89166145 -93249097 + L1MC2 LINE L1 6108 6336 -8 2009 144 12 0 chr6 89166837 89167164 -93248078 + MER50 LTR ERV1 1 331 -403 * 2187 187 82 7 chr6 89167157 89167611 -93247631 + MER50 LTR ERV1 235 722 -12 5415 157 44 34 chr6 89168251 89169723 -93245519 - L1MA5 LINE L1 -683 5617 4109 733 167 6 94 chr6 89169721 89169901 -93245341 + L1MA5 LINE L1 5617 5780 -520 * 1358 156 14 9 chr6 89169902 89170120 -93245122 + AluSg/x SINE Alu 84 302 -10 3025 149 6 8 chr6 89170120 89170651 -93244591 + L1MA5 LINE L1 5769 6298 -2 22 0 0 0 chr6 89170661 89170683 -93244559 + AT_rich Low_complexity Low_complexity 1 22 0 1080 245 18 22 chr6 89171378 89171656 -93243586 + MLT1A2 LTR MaLR 8 284 -90 884 169 0 68 chr6 89171817 89171994 -93243248 - AluSg/x SINE Alu -15 295 131 409 160 13 0 chr6 89172080 89172155 -93243087 + MLT1A2 LTR MaLR 290 365 0 228 336 91 35 chr6 89172162 89172305 -93242937 + L2 LINE L2 3111 3261 -11 376 266 53 35 chr6 89172331 89172444 -93242798 + L2 LINE L2 2608 2722 -592 695 308 118 23 chr6 89172605 89172995 -93242247 + LTR16C LTR ERVL 65 491 0 303 345 68 58 chr6 89173424 89173915 -93241327 + L2 LINE L2 2724 3260 -12 312 356 28 28 chr6 89174390 89174570 -93240672 - L2 LINE L2 -474 2840 2661 291 328 127 15 chr6 89175405 89175539 -93239703 - MIR SINE MIR -113 149 1 274 274 179 9 chr6 89175970 89176076 -93239166 + MIR SINE MIR 111 234 -28 592 309 38 25 chr6 89176413 89176649 -93238593 + MLT1I LTR MaLR 153 391 -18 680 241 7 0 chr6 89176652 89176789 -93238453 + MER5A DNA MER1_type 2 139 -50 848 153 18 6 chr6 89176803 89176966 -93238276 - L1MA6 LINE L1 -4 6296 6132 5977 118 2 10 chr6 89176979 89178051 -93237191 + L1PA14 LINE L1 4962 6160 -1 3767 208 62 10 chr6 89178090 89178900 -93236342 - L1MA7 LINE L1 -151 6140 5279 186 103 0 0 chr6 89178900 89178929 -93236313 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3767 208 62 10 chr6 89178929 89179083 -93236159 - L1MA7 LINE L1 -1012 5279 5134 3732 108 18 2 chr6 89179111 89179665 -93235577 - L1PA8A LINE L1 -1 6130 5568 13676 105 11 10 chr6 89179670 89180320 -93234922 + L1PA8A LINE L1 3320 3967 -2164 2181 105 0 29 chr6 89180320 89180635 -93234607 + AluY SINE Alu 5 310 -1 13676 105 11 10 chr6 89180635 89182222 -93233020 + L1PA8A LINE L1 3967 5554 -577 259 157 78 0 chr6 89182233 89182284 -93232958 + MER5A DNA MER1_type 135 189 0 288 362 58 7 chr6 89182305 89182443 -93232799 - MIR SINE MIR -84 178 34 435 305 15 8 chr6 89182877 89183008 -93232234 - L2 LINE L2 -418 2896 2765 290 340 0 0 chr6 89183046 89183146 -93232096 + MER103 DNA DNA 21 120 -46 21 95 0 0 chr6 89183363 89183426 -93231816 + AT_rich Low_complexity Low_complexity 1 63 0 403 349 148 4 chr6 89184743 89184972 -93230270 - MIR SINE MIR 0 262 1 335 302 16 16 chr6 89185317 89185446 -93229796 - MER94 DNA DNA -2 132 4 228 347 0 27 chr6 89185545 89185620 -93229622 - MLT1E1 LTR MaLR -331 262 190 420 219 92 0 chr6 89185647 89185766 -93229476 - MLT1E1 LTR MaLR -421 233 104 330 308 64 26 chr6 89185735 89185891 -93229351 - MLT1E LTR MaLR -431 162 1 * 1629 107 19 8 chr6 89186925 89187186 -93228056 + L1MA5A LINE L1 6031 6294 -3 1869 184 0 0 chr6 89187194 89187498 -93227744 + AluJb SINE Alu 1 304 -8 21 0 0 0 chr6 89187955 89187976 -93227266 + AT_rich Low_complexity Low_complexity 1 21 0 259 219 29 29 chr6 89188122 89188227 -93227015 + (TA)n Simple_repeat Simple_repeat 2 106 0 562 238 106 6 chr6 89188229 89188389 -93226853 - MER110A LTR ERV1 -2 466 291 23 78 0 0 chr6 89188415 89188466 -93226776 + AT_rich Low_complexity Low_complexity 1 51 0 181 247 194 0 chr6 89189014 89189107 -93226135 - L2 LINE L2 -10 3303 3193 615 308 120 39 chr6 89190082 89190498 -93224744 + L3 LINE CR1 866 1315 -262 210 244 0 0 chr6 89190637 89190678 -93224564 + polypurine Low_complexity Low_complexity 4 44 0 1564 188 26 16 chr6 89193152 89193460 -93221782 + AluJo SINE Alu 1 311 -1 183 80 0 0 chr6 89194215 89194240 -93221002 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 26 50 0 0 chr6 89194268 89194308 -93220934 + AT_rich Low_complexity Low_complexity 1 40 0 754 279 135 21 chr6 89194310 89194687 -93220555 - MLT1J1 LTR MaLR 0 446 27 523 270 39 28 chr6 89194949 89195127 -93220115 + MIR SINE MIR 83 262 0 1783 92 0 13 chr6 89195198 89195436 -93219806 - AluSc SINE Alu 0 309 75 234 0 0 0 chr6 89195518 89195544 -93219698 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4297 166 47 68 chr6 89196037 89197440 -93217802 - L1MB7 LINE L1 -9 6175 4817 638 273 55 37 chr6 89197847 89198118 -93217124 + MLT1J LTR MaLR 7 282 -229 315 320 160 33 chr6 89198204 89198354 -93216888 - L2 LINE L2 0 3272 3104 24 32 0 0 chr6 89198354 89198385 -93216857 + AT_rich Low_complexity Low_complexity 1 31 0 205 169 34 0 chr6 89198624 89198683 -93216559 + GA-rich Low_complexity Low_complexity 2 62 0 419 269 90 0 chr6 89198810 89198944 -93216298 + MER117 DNA MER1_type 1 146 -51 505 232 0 10 chr6 89198947 89199046 -93216196 + 5S rRNA rRNA 2 99 -22 1324 234 45 60 chr6 89199055 89199525 -93215717 + MLT2C2 LTR ERVL 1 463 -1 210 270 34 56 chr6 89199566 89199655 -93215587 - MIR SINE MIR -74 188 102 883 324 96 18 chr6 89199974 89200553 -93214689 + L2 LINE L2 2508 3134 -179 2066 79 4 4 chr6 89200674 89200939 -93214303 + AluSc SINE Alu 35 299 -10 806 301 51 30 chr6 89201442 89201872 -93213370 - MLT1J LTR MaLR -18 493 16 219 258 16 0 chr6 89202975 89203037 -93212205 + GA-rich Low_complexity Low_complexity 1 63 0 1948 101 38 3 chr6 89204016 89204288 -93210954 + AluSq SINE Alu 1 285 -28 375 23 0 0 chr6 89204288 89204332 -93210910 + (CA)n Simple_repeat Simple_repeat 1 44 0 1948 101 38 3 chr6 89204332 89204346 -93210896 + AluSq SINE Alu 285 297 -16 200 204 0 23 chr6 89205420 89205464 -93209778 + CT-rich Low_complexity Low_complexity 3 45 0 488 71 0 0 chr6 89205498 89205568 -93209674 - L1PB1 LINE L1 -6 6145 6076 590 279 148 28 chr6 89205626 89206515 -93208727 - L1MEd LINE L1 -2735 3394 2399 22 80 0 0 chr6 89206740 89206790 -93208452 + AT_rich Low_complexity Low_complexity 1 50 0 25 51 0 0 chr6 89207106 89207145 -93208097 + AT_rich Low_complexity Low_complexity 1 39 0 253 293 88 27 chr6 89207303 89207450 -93207792 - HAL1 LINE L1 -947 1560 1405 1336 259 76 64 chr6 89207465 89208203 -93207039 - L1MEd LINE L1 -4884 1235 489 231 292 0 0 chr6 89208763 89208828 -93206414 + MLT1K LTR MaLR 524 588 0 22 70 0 0 chr6 89209671 89209714 -93205528 + AT_rich Low_complexity Low_complexity 1 43 0 2612 78 22 3 chr6 89209733 89210090 -93205152 - THE1B LTR MaLR 0 364 1 226 324 101 36 chr6 89211031 89211170 -93204072 - MIR3 SINE MIR -59 149 2 22 0 0 0 chr6 89211190 89211212 -93204030 + AT_rich Low_complexity Low_complexity 1 22 0 2061 105 3 3 chr6 89211510 89211837 -93203405 + AluSp SINE Alu 1 327 0 544 318 87 4 chr6 89213555 89213807 -93201435 + L3 LINE CR1 950 1222 -355 288 298 173 0 chr6 89213829 89213933 -93201309 + L2 LINE L2 3151 3272 0 369 232 77 83 chr6 89213933 89214101 -93201141 + L3 LINE CR1 1254 1420 -157 2397 160 66 2 chr6 89215116 89215572 -93199670 + MER31A LTR ERV1 1 485 0 276 252 75 28 chr6 89215859 89215966 -93199276 - L2 LINE L2 -1 3312 3201 301 43 43 0 chr6 89216253 89216300 -93198942 + (TC)n Simple_repeat Simple_repeat 2 50 0 330 295 0 0 chr6 89216326 89216421 -93198821 + L1MC4 LINE L1 6596 6690 -1352 234 250 0 0 chr6 89216938 89216990 -93198252 + L2 LINE L2 3201 3252 -20 340 309 142 0 chr6 89217145 89217307 -93197935 - MIR SINE MIR -30 232 48 295 155 14 14 chr6 89217523 89217594 -93197648 + CT-rich Low_complexity Low_complexity 1 71 0 1240 313 80 41 chr6 89217599 89218383 -93196859 - L2 LINE L2 -424 2890 2076 2947 6 0 0 chr6 89218406 89218724 -93196518 + AluYb8 SINE Alu 1 318 0 2498 148 0 65 chr6 89219991 89220484 -93194758 + L1MC1 LINE L1 5428 5888 -445 3159 168 12 31 chr6 89220484 89221121 -93194121 + L1MC1 LINE L1 5703 6332 -1 30 0 0 0 chr6 89221407 89221437 -93193805 + AT_rich Low_complexity Low_complexity 1 30 0 237 299 195 0 chr6 89222525 89222612 -93192630 - MIR3 SINE MIR -47 161 58 238 369 36 0 chr6 89222804 89222888 -93192354 + L2 LINE L2 3172 3258 -14 1849 153 61 3 chr6 89223019 89223346 -93191896 + MER7A DNA MER2_type 2 345 -1 23 33 0 0 chr6 89224138 89224168 -93191074 + AT_rich Low_complexity Low_complexity 1 30 0 5288 122 33 50 chr6 89224384 89225318 -93189924 + L1MA8 LINE L1 5370 6287 -4 1083 300 206 19 chr6 89225889 89226582 -93188660 + L2 LINE L2 1522 2344 -970 687 327 44 32 chr6 89226644 89226983 -93188259 + L2 LINE L2 2598 2940 -374 2800 122 137 4 chr6 89226983 89227442 -93187800 + MLT2B1 LTR ERVL 1 520 0 861 325 43 30 chr6 89227442 89227811 -93187431 + L2 LINE L2 2935 3308 -5 200 31 62 0 chr6 89227966 89227998 -93187244 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 335 210 62 0 chr6 89228324 89228405 -93186837 + L1ME1 LINE L1 6064 6149 -17 3562 63 25 0 chr6 89228651 89229124 -93186118 - L1PA13 LINE L1 -3 6160 5676 40 59 0 0 chr6 89229971 89230039 -93185203 + AT_rich Low_complexity Low_complexity 1 68 0 769 312 47 40 chr6 89230050 89230584 -93184658 - MLT1L LTR MaLR -9 606 43 1824 160 0 17 chr6 89230832 89231143 -93184099 - AluSx SINE Alu 0 306 1 302 253 209 0 chr6 89232254 89232345 -93182897 - MER81 DNA DNA 0 114 5 254 336 164 7 chr6 89232932 89233072 -93182170 - MIR SINE MIR -76 186 25 351 279 162 22 chr6 89233603 89233832 -93181410 + MIR SINE MIR 2 262 0 24 53 0 0 chr6 89235489 89235527 -93179715 + AT_rich Low_complexity Low_complexity 1 38 0 240 331 132 12 chr6 89236367 89236618 -93178624 - L1ME4a LINE L1 -99 6022 5742 547 100 0 0 chr6 89236996 89237076 -93178166 - MADE1 DNA Mariner 0 80 1 28 99 0 0 chr6 89237257 89237348 -93177894 + AT_rich Low_complexity Low_complexity 1 91 0 279 317 50 43 chr6 89237351 89237512 -93177730 + MIR SINE MIR 45 206 -56 37 62 0 0 chr6 89238075 89238140 -93177102 + AT_rich Low_complexity Low_complexity 1 65 0 925 178 57 0 chr6 89239352 89239509 -93175733 - AluJo SINE Alu -24 288 123 1238 121 21 0 chr6 89239526 89239716 -93175526 - MSTA LTR MaLR -48 380 187 7897 11 0 0 chr6 89239716 89241104 -93174138 - L1PA2 LINE L1 0 6155 4767 10967 30 0 5 chr6 89241105 89242420 -93172822 + L1PA2 LINE L1 3433 4741 -1405 779 206 48 14 chr6 89242427 89242573 -93172669 - FRAM SINE Alu -14 152 2 2135 128 32 32 chr6 89242613 89242988 -93172254 - THE1C LTR MaLR 0 375 1 338 289 139 28 chr6 89243458 89243638 -93171604 + MIR SINE MIR 37 236 -26 368 327 104 18 chr6 89243836 89244056 -93171186 - MIR SINE MIR -4 258 20 232 293 43 52 chr6 89244656 89244772 -93170470 - L2 LINE L2 -50 3263 3149 2061 127 0 36 chr6 89245029 89245336 -93169906 + AluSx SINE Alu 1 296 -16 654 252 164 75 chr6 89245641 89245907 -93169335 + LTR16A1 LTR ERVL 52 362 -95 1986 136 23 10 chr6 89245907 89246215 -93169027 - AluSx SINE Alu 0 312 1 654 252 164 75 chr6 89246215 89246321 -93168921 + LTR16A1 LTR ERVL 362 457 0 239 359 111 0 chr6 89247759 89247876 -93167366 + L2 LINE L2 3093 3222 -50 1020 157 6 22 chr6 89248078 89248256 -93166986 - Tigger1 DNA MER2_type -5 2413 2239 6092 131 35 12 chr6 89248258 89248883 -93166359 + L1MA3 LINE L1 4771 5380 -925 2133 123 48 28 chr6 89248883 89249240 -93166002 - THE1B LTR MaLR 0 364 1 11086 95 33 3 chr6 89249240 89250774 -93164468 - THE1B-int LTR MaLR 0 1580 1 2077 130 47 39 chr6 89250774 89251135 -93164107 - THE1B LTR MaLR 0 364 1 6092 131 35 12 chr6 89251135 89252009 -93163233 + L1MA3 LINE L1 5379 6305 0 461 134 175 0 chr6 89252011 89252108 -93163134 - Tigger1 DNA MER2_type -163 2255 2142 * 1294 204 19 0 chr6 89252105 89252374 -93162868 - Tigger1 DNA MER2_type -2141 277 4 794 237 6 0 chr6 89252891 89253047 -93162195 + FAM SINE Alu 1 157 -18 10212 210 24 24 chr6 89253199 89253693 -93161549 + L1PA16 LINE L1 2689 3182 -2984 2389 89 7 0 chr6 89253693 89253997 -93161245 + AluSc SINE Alu 1 306 -3 10212 210 24 24 chr6 89253997 89256257 -93158985 + L1PA16 LINE L1 3182 5434 -732 733 115 15 23 chr6 89256257 89256386 -93158856 + L1PB1 LINE L1 6023 6151 0 4150 149 21 1 chr6 89256389 89256621 -93158621 + L1PA16 LINE L1 5436 5662 -504 1767 170 20 13 chr6 89256621 89256921 -93158321 + AluJb SINE Alu 2 303 -9 1077 72 36 0 chr6 89256924 89257090 -93158152 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 4150 149 21 1 chr6 89257090 89257556 -93157686 + L1PA16 LINE L1 5663 6152 -14 882 156 11 6 chr6 89259588 89259767 -93155475 + GA-rich Low_complexity Low_complexity 1 180 0 1153 325 88 4 chr6 89262712 89263180 -93152062 + L2 LINE L2 2311 2817 -497 481 308 7 28 chr6 89263390 89263533 -93151709 + MER5B DNA MER1_type 39 178 0 21 0 0 0 chr6 89263882 89263903 -93151339 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 89264002 89264030 -93151212 + AT_rich Low_complexity Low_complexity 1 28 0 517 274 103 23 chr6 89264481 89264656 -93150586 + MIR SINE MIR 51 239 -23 188 267 0 0 chr6 89264622 89264667 -93150575 + L2 LINE L2 3251 3295 -18 * 284 352 219 4 chr6 89266253 89266500 -93148742 - L3 LINE CR1 -216 1361 1062 1264 169 36 66 chr6 89267565 89267866 -93147376 + AluJo SINE Alu 7 298 -14 23 33 0 0 chr6 89267903 89267933 -93147309 + AT_rich Low_complexity Low_complexity 1 30 0 226 288 125 0 chr6 89268250 89268330 -93146912 + L3 LINE CR1 681 770 -807 438 286 58 116 chr6 89268716 89268787 -93146455 + LTR33 LTR ERVL 2 76 -445 1798 165 7 3 chr6 89268787 89269078 -93146164 - AluJb SINE Alu -18 294 3 438 286 58 116 chr6 89269078 89269556 -93145686 + LTR33 LTR ERVL 76 519 -2 23 0 0 0 chr6 89271376 89271399 -93143843 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr6 89271711 89271749 -93143493 + AT_rich Low_complexity Low_complexity 1 38 0 192 40 0 0 chr6 89271961 89271986 -93143256 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 243 372 107 19 chr6 89272073 89272436 -93142806 + L2 LINE L2 2133 2527 -787 501 284 59 15 chr6 89272505 89272709 -93142533 - L1ME3A LINE L1 -8 6162 5950 1519 236 114 48 chr6 89275178 89275573 -93139669 - L1ME3A LINE L1 -152 6018 5651 180 0 0 0 chr6 89275573 89275593 -93139649 + (TA)n Simple_repeat Simple_repeat 1 20 0 1519 236 114 48 chr6 89275593 89276152 -93139090 - L1ME3A LINE L1 -519 5651 5009 805 195 23 65 chr6 89276873 89277088 -93138154 + MER3 DNA MER1_type 4 209 0 243 312 114 15 chr6 89278733 89278935 -93136307 + L1ME LINE L1 5560 5781 -340 203 259 17 35 chr6 89279111 89279227 -93136015 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 243 208 57 0 chr6 89279564 89279617 -93135625 - MIR SINE MIR -114 148 93 2389 106 6 11 chr6 89279901 89280258 -93134984 + THE1A LTR MaLR 1 355 0 480 203 7 26 chr6 89281533 89281686 -93133556 + GA-rich Low_complexity Low_complexity 4 153 0 21 36 0 0 chr6 89283386 89283414 -93131828 + AT_rich Low_complexity Low_complexity 1 28 0 199 270 56 22 chr6 89283529 89283618 -93131624 + MIR SINE MIR 116 207 -55 29 28 0 0 chr6 89284302 89284338 -93130904 + AT_rich Low_complexity Low_complexity 1 36 0 3039 224 94 27 chr6 89284499 89284875 -93130367 - L1ME1 LINE L1 -5 6161 5812 3471 157 31 3 chr6 89284875 89285493 -93129749 - MER41B LTR ERV1 0 635 1 3039 224 94 27 chr6 89285493 89286405 -93128837 - L1ME1 LINE L1 -354 5812 4774 526 218 45 0 chr6 89286406 89286516 -93128726 + MER7A DNA MER2_type 2 114 -232 2941 122 12 129 chr6 89286516 89287285 -93127957 - L1PB4 LINE L1 -12 6144 5310 1798 117 16 49 chr6 89287285 89287591 -93127651 + L1PB4 LINE L1 5842 6138 -18 3526 139 32 8 chr6 89287594 89288563 -93126679 + L1PA7 LINE L1 4560 6150 -4 5059 103 12 1 chr6 89288576 89289316 -93125926 + L1PA12 LINE L1 5417 6164 -4 28 29 0 0 chr6 89289316 89289351 -93125891 + AT_rich Low_complexity Low_complexity 1 35 0 639 315 62 70 chr6 89289393 89290035 -93125207 - L1MEc LINE L1 -5751 645 9 429 311 25 66 chr6 89290088 89290147 -93125095 - MIR SINE MIR -31 231 171 4451 140 79 13 chr6 89290147 89290978 -93124264 + L1MC1 LINE L1 5446 6331 -2 429 311 25 66 chr6 89290978 89291159 -93124083 - MIR SINE MIR -91 171 1 263 310 132 23 chr6 89293505 89293634 -93121608 - MIR3 SINE MIR -32 176 34 494 291 81 7 chr6 89296750 89296898 -93118344 + MIR SINE MIR 38 196 -66 494 174 9 0 chr6 89296951 89297060 -93118182 + CT-rich Low_complexity Low_complexity 4 113 0 2367 269 128 25 chr6 89297288 89298233 -93117009 + L2 LINE L2 1805 2846 -468 463 261 80 51 chr6 89298344 89298520 -93116722 + L2 LINE L2 3133 3313 0 337 343 52 17 chr6 89299042 89299214 -93116028 - MIR SINE MIR -35 227 50 259 350 50 31 chr6 89299211 89299371 -93115871 - MER5A DNA MER1_type -6 183 21 * 191 379 121 0 chr6 89301204 89301320 -93113922 - L2 LINE L2 -2 3311 3182 445 270 66 26 chr6 89301679 89301831 -93113411 + MIR SINE MIR 7 164 -98 828 264 143 74 chr6 89301836 89302339 -93112903 + MLT1H LTR MaLR 12 549 0 1996 72 0 0 chr6 89302812 89303077 -93112165 + L1MA2 LINE L1 5973 6237 -67 24 0 0 0 chr6 89303098 89303122 -93112120 + AT_rich Low_complexity Low_complexity 1 24 0 1038 271 118 18 chr6 89304609 89305187 -93110055 + L2 LINE L2 2669 3309 -4 253 289 60 0 chr6 89305392 89305475 -93109767 - MIR SINE MIR -70 192 105 683 154 44 7 chr6 89306234 89306370 -93108872 + MLT1A1 LTR MaLR 1 141 -224 560 168 47 9 chr6 89306374 89306481 -93108761 + MLT1A1 LTR MaLR 255 365 0 21 0 0 0 chr6 89307182 89307203 -93108039 + AT_rich Low_complexity Low_complexity 1 21 0 396 277 28 21 chr6 89307557 89307698 -93107544 - L3b LINE CR1 -340 1243 1102 705 211 115 118 chr6 89308538 89309068 -93106174 + MLT1G1 LTR MaLR 7 587 0 537 280 116 4 chr6 89309717 89309949 -93105293 + MIR SINE MIR 3 260 -2 26 64 0 0 chr6 89309956 89310003 -93105239 + AT_rich Low_complexity Low_complexity 1 47 0 218 346 28 37 chr6 89310138 89310245 -93104997 - MIR3 SINE MIR -50 158 53 201 200 129 35 chr6 89310339 89310424 -93104818 + MIR SINE MIR 120 212 -50 365 285 93 0 chr6 89310490 89310580 -93104662 - MER112 DNA MER1_type -1 259 179 189 74 0 0 chr6 89310580 89310607 -93104635 + (AATAG)n Simple_repeat Simple_repeat 4 30 0 365 285 93 0 chr6 89310607 89310667 -93104575 - MER112 DNA MER1_type -81 179 95 251 286 0 0 chr6 89310737 89310793 -93104449 - MER5A DNA MER1_type 0 189 134 343 276 79 0 chr6 89311208 89311284 -93103958 - L2 LINE L2 0 3272 3191 259 261 193 68 chr6 89311418 89311594 -93103648 - MIR SINE MIR -56 206 9 1844 170 3 6 chr6 89311853 89312165 -93103077 - AluJb SINE Alu -1 311 1 254 348 13 52 chr6 89312309 89312464 -93102778 - LTR33 LTR ERVL -371 150 2 227 224 13 66 chr6 89314093 89314169 -93101073 + MIR SINE MIR 119 190 -72 195 42 0 0 chr6 89315094 89315118 -93100124 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 761 309 31 71 chr6 89315558 89315978 -93099264 - L2 LINE L2 0 3313 2911 1233 143 79 12 chr6 89316923 89317175 -93098067 - L1MA9 LINE L1 0 6312 6044 196 267 50 17 chr6 89317233 89317293 -93097949 + L2 LINE L2 3206 3267 -5 270 164 104 0 chr6 89317446 89317513 -93097729 - MER53 DNA DNA 0 189 116 232 115 35 71 chr6 89317525 89317638 -93097604 + (TTATA)n Simple_repeat Simple_repeat 5 113 0 * 236 47 58 88 chr6 89317529 89317700 -93097542 + (TA)n Simple_repeat Simple_repeat 1 166 0 189 96 88 32 chr6 89317713 89317838 -93097404 + (TA)n Simple_repeat Simple_repeat 1 132 0 386 118 94 35 chr6 89317850 89318020 -93097222 + (TA)n Simple_repeat Simple_repeat 1 180 0 220 102 96 32 chr6 89318033 89318190 -93097052 + (TA)n Simple_repeat Simple_repeat 1 167 0 25 31 0 0 chr6 89318198 89318230 -93097012 + AT_rich Low_complexity Low_complexity 1 32 0 237 165 88 88 chr6 89318230 89318321 -93096921 - MER53 DNA DNA -98 91 1 2304 70 3 7 chr6 89318966 89319266 -93095976 + AluY SINE Alu 1 299 -12 2371 88 3 0 chr6 89319821 89320116 -93095126 - AluSc SINE Alu -13 296 1 2839 146 169 103 chr6 89320124 89320677 -93094565 - L1MC3 LINE L1 0 7785 7270 306 244 0 12 chr6 89320677 89320759 -93094483 - MLT1F1 LTR MaLR -442 125 45 2839 146 169 103 chr6 89320759 89321136 -93094106 - L1MC3 LINE L1 -515 7270 6707 21 57 0 0 chr6 89321304 89321339 -93093903 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr6 89321963 89322002 -93093240 + (CA)n Simple_repeat Simple_repeat 2 40 0 26 64 0 0 chr6 89324808 89324855 -93090387 + AT_rich Low_complexity Low_complexity 1 47 0 201 74 0 0 chr6 89325167 89325194 -93090048 + (A)n Simple_repeat Simple_repeat 1 27 0 180 221 39 0 chr6 89325398 89325475 -93089767 + (TA)n Simple_repeat Simple_repeat 1 80 0 204 40 0 0 chr6 89326402 89326427 -93088815 + (T)n Simple_repeat Simple_repeat 1 25 0 258 194 0 0 chr6 89328785 89328857 -93086385 + (CCG)n Simple_repeat Simple_repeat 2 73 0 199 316 53 0 chr6 89331119 89331176 -93084066 - L2 LINE L2 -19 3294 3235 373 307 132 5 chr6 89331497 89331686 -93083556 - MIR SINE MIR -13 249 37 336 221 63 0 chr6 89331790 89331917 -93083325 + GA-rich Low_complexity Low_complexity 1 135 0 182 243 71 14 chr6 89332190 89332260 -93082982 - MER5A DNA MER1_type -115 74 1 196 227 23 0 chr6 89332633 89332677 -93082565 + L2 LINE L2 3264 3308 -5 328 265 171 43 chr6 89333240 89333451 -93081791 - MIR SINE MIR 0 262 25 198 318 30 15 chr6 89334672 89334738 -93080504 - MIR SINE MIR -93 115 49 22 0 0 0 chr6 89337267 89337289 -93077953 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr6 89338970 89338995 -93076247 + AT_rich Low_complexity Low_complexity 1 25 0 230 250 0 0 chr6 89339304 89339352 -93075890 + GA-rich Low_complexity Low_complexity 2 49 0 193 206 16 79 chr6 89340073 89340136 -93075106 + MIR SINE MIR 185 243 -19 649 349 75 21 chr6 89341657 89342156 -93073086 - L2 LINE L2 -199 3114 2595 241 246 33 0 chr6 89342163 89342224 -93073018 - MER112 DNA MER1_type -1 259 197 1692 40 2 2 chr6 89342289 89342539 -93072703 - MER11B LTR ERVK -97 1139 750 848 168 125 19 chr6 89344729 89344985 -93070257 - MER69 DNA AcHobo -1 2525 2243 916 270 154 28 chr6 89344996 89345425 -93069817 - MER69 DNA AcHobo -1880 646 164 871 162 32 19 chr6 89345425 89345579 -93069663 - FRAM SINE Alu -20 156 1 318 202 31 11 chr6 89345581 89345705 -93069537 - MER69 DNA AcHobo -2352 174 1 377 277 181 12 chr6 89346047 89346213 -93069029 + MIR SINE MIR 42 235 -27 894 251 21 33 chr6 89346797 89347040 -93068202 + MIR SINE MIR 8 247 -15 1104 247 86 51 chr6 89347164 89347650 -93067592 - MLT1D LTR MaLR -2 503 1 444 259 119 55 chr6 89348514 89348750 -93066492 - MIR SINE MIR -2 260 10 354 298 0 19 chr6 89348893 89348997 -93066245 - L2 LINE L2 -6 3307 3206 818 138 16 0 chr6 89349176 89349299 -93065943 + L1PA10 LINE L1 6040 6164 -4 23 0 0 0 chr6 89349299 89349322 -93065920 + AT_rich Low_complexity Low_complexity 1 23 0 182 37 37 0 chr6 89349507 89349534 -93065708 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 320 120 0 0 chr6 89349936 89349986 -93065256 - MER53 DNA DNA -139 50 1 569 290 69 43 chr6 89350015 89350155 -93065087 + L2 LINE L2 3023 3158 -155 186 71 0 0 chr6 89350155 89350183 -93065059 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 569 290 69 43 chr6 89350183 89350318 -93064924 + L2 LINE L2 3158 3305 -8 549 266 65 52 chr6 89350423 89350652 -93064590 - MIR SINE MIR -11 251 20 1146 223 89 0 chr6 89351549 89351886 -93063356 + MER58D DNA MER1_type 5 371 -15 228 35 0 0 chr6 89352446 89352475 -93062767 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 1959 162 6 13 chr6 89352992 89353362 -93061880 + AluSx SINE Alu 1 368 0 888 157 43 0 chr6 89353605 89353745 -93061497 + AluSg/x SINE Alu 139 284 -26 2178 167 22 22 chr6 89353830 89353857 -93061385 - MSTB LTR MaLR -13 413 387 2033 137 19 43 chr6 89353857 89354230 -93061012 - THE1B LTR MaLR 0 364 1 2178 167 22 22 chr6 89354230 89354615 -93060627 - MSTB LTR MaLR -38 388 1 323 296 111 9 chr6 89355594 89355702 -93059540 + MIR SINE MIR 125 243 -19 607 234 163 40 chr6 89356036 89356263 -93058979 - MIR SINE MIR 0 262 8 306 50 0 0 chr6 89356388 89356428 -93058814 + (CA)n Simple_repeat Simple_repeat 1 40 0 256 221 180 25 chr6 89356639 89356761 -93058481 - MIR SINE MIR 0 262 122 2472 79 0 0 chr6 89357064 89357367 -93057875 + AluY SINE Alu 1 303 -8 22 56 0 0 chr6 89357893 89357929 -93057313 + AT_rich Low_complexity Low_complexity 1 36 0 762 218 157 138 chr6 89358823 89359151 -93056091 + MLT1G LTR MaLR 1 338 -257 2401 111 13 24 chr6 89359151 89359530 -93055712 - THE1C LTR MaLR 0 375 1 762 218 157 138 chr6 89359530 89359564 -93055678 + MLT1G LTR MaLR 338 370 -225 1143 210 25 10 chr6 89359603 89359822 -93055420 - MER33 DNA MER1_type -2267 318 91 423 38 0 0 chr6 89359822 89359875 -93055367 + (TG)n Simple_repeat Simple_repeat 2 54 0 1143 210 25 10 chr6 89359875 89359982 -93055260 - MER33 DNA MER1_type -2494 91 1 227 193 12 145 chr6 89359982 89360060 -93055182 + MLT1G LTR MaLR 390 456 -134 983 316 74 70 chr6 89360220 89360818 -93054424 - L3 LINE CR1 0 1577 978 240 333 34 26 chr6 89360930 89361047 -93054195 + MIR SINE MIR 9 126 -136 184 400 0 0 chr6 89361194 89361269 -93053973 - L3 LINE CR1 -737 840 766 189 267 50 0 chr6 89362048 89362108 -93053134 - MIR3 SINE MIR -26 182 120 204 227 0 0 chr6 89362221 89362265 -93052977 + (CATA)n Simple_repeat Simple_repeat 4 47 0 492 313 52 30 chr6 89363074 89363307 -93051935 - MIR SINE MIR -12 250 13 234 297 38 69 chr6 89364622 89364809 -93050433 - MIR SINE MIR -56 206 16 1137 240 16 8 chr6 89365945 89366203 -93049039 + MIR SINE MIR 2 261 -1 318 316 60 8 chr6 89366351 89366486 -93048756 + MIR SINE MIR 2 146 -62 951 283 111 31 chr6 89366565 89367137 -93048105 - L2 LINE L2 -5 3308 2701 456 216 144 72 chr6 89367578 89367731 -93047511 + MIR SINE MIR 82 245 -17 211 125 25 0 chr6 89368839 89368879 -93046363 + (TG)n Simple_repeat Simple_repeat 1 41 0 538 298 95 18 chr6 89368882 89369167 -93046075 - L1MC4a LINE L1 -1882 5926 5620 239 266 0 89 chr6 89369182 89369261 -93045981 + L2 LINE L2 3201 3272 0 222 128 0 0 chr6 89371753 89371792 -93043450 + (CA)n Simple_repeat Simple_repeat 2 40 0 284 279 157 21 chr6 89371818 89372118 -93043124 + L1ME LINE L1 5306 5639 -482 2725 217 59 40 chr6 89372212 89372957 -93042285 + L1MD2 LINE L1 5599 6357 -2 24 32 0 0 chr6 89373410 89373441 -93041801 + AT_rich Low_complexity Low_complexity 1 31 0 4661 177 61 16 chr6 89373778 89374782 -93040460 - L1MA10 LINE L1 -7 6327 5279 1647 239 24 92 chr6 89374778 89375497 -93039745 + L1ME4a LINE L1 4534 5203 -943 * 189 0 0 0 chr6 89375552 89375573 -93039669 + (CA)n Simple_repeat Simple_repeat 2 22 0 195 42 0 0 chr6 89375574 89375598 -93039644 + (CAA)n Simple_repeat Simple_repeat 2 25 0 735 278 72 10 chr6 89376644 89376853 -93038389 + LTR33 LTR ERVL 1 222 -299 428 302 16 0 chr6 89376949 89377078 -93038164 + LTR33 LTR ERVL 391 521 0 556 319 78 35 chr6 89377078 89377423 -93037819 + L1ME4a LINE L1 5755 6114 -7 1968 196 30 37 chr6 89377471 89377904 -93037338 - MSTB1 LTR MaLR 0 432 3 1731 189 70 6 chr6 89378415 89378758 -93036484 + MLT1A1 LTR MaLR 1 365 0 248 167 19 0 chr6 89379025 89379079 -93036163 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 56 0 0 chr6 89379136 89379172 -93036070 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr6 89379764 89379798 -93035444 + AT_rich Low_complexity Low_complexity 1 34 0 254 259 0 62 chr6 89379824 89379905 -93035337 + MER69 DNA AcHobo 2442 2517 -9 502 316 36 19 chr6 89380811 89381035 -93034207 - MIR SINE MIR -36 226 4 238 293 0 0 chr6 89382450 89382508 -93032734 + MIR SINE MIR 203 260 -2 24 0 0 0 chr6 89382579 89382603 -93032639 + AT_rich Low_complexity Low_complexity 1 24 0 2256 219 108 44 chr6 89382631 89383410 -93031832 - MER63C DNA MER1_type -53 877 49 355 324 75 6 chr6 89383618 89383791 -93031451 - MLT1H LTR MaLR -6 543 359 724 204 120 11 chr6 89383908 89384099 -93031143 - MLT1H LTR MaLR -337 212 1 224 208 0 21 chr6 89384663 89384711 -93030531 + L2 LINE L2 3229 3275 -38 632 278 56 32 chr6 89385167 89385419 -93029823 - MIR SINE MIR -4 258 1 503 254 158 30 chr6 89386211 89386376 -93028866 - MER5A DNA MER1_type 0 189 4 1603 190 17 0 chr6 89386755 89387044 -93028198 + AluJo SINE Alu 11 304 -8 247 292 19 99 chr6 89387329 89387490 -93027752 - MIR SINE MIR -60 148 4 1025 205 49 0 chr6 89387561 89387766 -93027476 - AluJo SINE Alu -97 215 1 454 269 31 0 chr6 89388164 89388294 -93026948 + MER94 DNA DNA 1 134 0 24 0 0 0 chr6 89388537 89388561 -93026681 + AT_rich Low_complexity Low_complexity 1 24 0 467 316 29 0 chr6 89389615 89389751 -93025491 - MER5B DNA MER1_type 0 178 39 217 326 133 0 chr6 89389969 89390067 -93025175 - L2 LINE L2 -248 3024 2914 241 347 0 0 chr6 89390098 89390173 -93025069 - L2 LINE L2 -4 3309 3235 189 0 0 0 chr6 89390478 89390499 -93024743 + (TTA)n Simple_repeat Simple_repeat 2 22 0 653 205 117 18 chr6 89390942 89391113 -93024129 + MER5A DNA MER1_type 1 188 -1 2182 141 33 11 chr6 89391161 89391522 -93023720 - MLT1B LTR MaLR 0 390 22 406 267 83 8 chr6 89391572 89391692 -93023550 + MER5B DNA MER1_type 47 175 -3 1967 180 48 2 chr6 89393610 89394027 -93021215 + MER63B DNA MER1_type 1 436 0 1475 250 188 20 chr6 89394361 89395291 -93019951 + L2 LINE L2 2069 3313 0 191 362 0 0 chr6 89395992 89396061 -93019181 + MIR SINE MIR 81 149 -59 564 280 93 9 chr6 89396075 89396289 -93018953 + MIR SINE MIR 29 260 -2 486 214 65 26 chr6 89396336 89396490 -93018752 + LTR33 LTR ERVL 1 160 -361 1571 168 30 49 chr6 89396881 89397185 -93018057 + AluJb SINE Alu 1 298 -14 1265 219 147 32 chr6 89397216 89397563 -93017679 + MSTD LTR MaLR 10 396 0 250 171 34 80 chr6 89398614 89398702 -93016540 - MLT1J2 LTR MaLR -2 448 365 583 286 59 0 chr6 89399037 89399221 -93016021 + MIR SINE MIR 16 214 -48 25 0 0 0 chr6 89399829 89399854 -93015388 + AT_rich Low_complexity Low_complexity 1 25 0 10344 174 52 7 chr6 89399916 89402719 -93012523 - L1MA4 LINE L1 -284 6016 3081 2638 242 76 23 chr6 89402917 89403863 -93011379 + L1MB7 LINE L1 733 1728 -4656 * 5524 195 35 80 chr6 89403862 89404367 -93010875 + L1MB7 LINE L1 3585 4111 -2309 2176 235 110 11 chr6 89404367 89404993 -93010249 + MER76 LTR ERV 1 688 0 5524 195 35 80 chr6 89404993 89405166 -93010076 + L1MB7 LINE L1 4111 4290 -2130 590 122 0 0 chr6 89405166 89405291 -93009951 - AluY SINE Alu 0 325 201 5524 195 35 80 chr6 89405291 89406208 -93009034 + L1MB7 LINE L1 4290 5247 -1173 2272 109 3 0 chr6 89406208 89406511 -93008731 - AluSq SINE Alu -9 304 1 5524 195 35 80 chr6 89406511 89407791 -93007451 + L1MB7 LINE L1 5247 6401 -19 289 291 10 19 chr6 89407815 89407918 -93007324 - L1ME4a LINE L1 -70 6051 5950 965 192 0 0 chr6 89408565 89408732 -93006510 - AluJb SINE Alu -1 311 145 202 263 0 13 chr6 89409944 89410020 -93005222 + (TA)n Simple_repeat Simple_repeat 1 75 0 499 268 34 14 chr6 89410046 89410255 -93004987 - L1ME4a LINE L1 -227 5894 5682 3120 60 0 0 chr6 89411807 89412204 -93003038 - L1PA7 LINE L1 0 6154 5758 3214 151 18 50 chr6 89412754 89413408 -93001834 + L1MA8 LINE L1 5654 6286 -5 277 360 122 6 chr6 89413448 89413612 -93001630 + MIR SINE MIR 32 214 -48 357 293 36 90 chr6 89414154 89414488 -93000754 + L2 LINE L2 2998 3313 0 577 152 30 18 chr6 89415594 89415759 -92999483 + GA-rich Low_complexity Low_complexity 2 168 0 2401 83 3 0 chr6 89417757 89418059 -92997183 - AluSq SINE Alu -8 305 3 313 107 54 0 chr6 89418230 89418286 -92996956 + L1MB1 LINE L1 6108 6166 -2 21 0 0 0 chr6 89418307 89418328 -92996914 + AT_rich Low_complexity Low_complexity 1 21 0 660 280 151 0 chr6 89418732 89418957 -92996285 + MIR SINE MIR 2 260 -2 325 300 63 56 chr6 89419249 89419519 -92995723 + L1MB3 LINE L1 5556 5827 -294 21 36 0 0 chr6 89421326 89421354 -92993888 + AT_rich Low_complexity Low_complexity 1 28 0 223 203 0 17 chr6 89421387 89421446 -92993796 + T-rich Low_complexity Low_complexity 4 61 0 594 224 75 56 chr6 89422280 89422494 -92992748 - LTR33 LTR ERVL 0 521 304 256 315 87 33 chr6 89422754 89422846 -92992396 - MER91A DNA MER1_type 0 196 100 255 196 0 36 chr6 89422861 89422917 -92992325 + MLT1L LTR MaLR 142 195 -420 5261 80 14 0 chr6 89423219 89423961 -92991281 - L1P LINE L1 -1840 4306 3555 309 256 105 101 chr6 89425030 89425288 -92989954 + L2 LINE L2 2928 3186 -86 559 186 103 6 chr6 89425703 89425859 -92989383 + L1MB3 LINE L1 6011 6181 -2 2574 61 0 3 chr6 89426467 89426779 -92988463 - AluY SINE Alu 0 311 1 302 324 53 18 chr6 89427148 89427318 -92987924 - L1M4 LINE L1 -1273 4873 4698 2234 89 7 0 chr6 89427468 89427761 -92987481 + AluSc SINE Alu 1 295 -14 2426 168 26 0 chr6 89427843 89428260 -92986982 + MSTA LTR MaLR 1 428 0 1795 205 58 22 chr6 89428361 89428809 -92986433 + MLT1C LTR MaLR 4 467 0 487 213 55 71 chr6 89428824 89428913 -92986329 - MER104 DNA MER2_type -1718 180 91 2216 122 0 0 chr6 89428913 89429216 -92986026 + AluSg SINE Alu 2 304 -6 487 213 55 71 chr6 89429216 89429309 -92985933 - MER104 DNA MER2_type -1807 91 1 208 232 18 54 chr6 89429679 89429735 -92985507 + MER5B DNA MER1_type 2 55 -123 719 247 118 79 chr6 89429743 89430185 -92985057 + L1MC4a LINE L1 5467 5925 -1883 348 247 74 81 chr6 89430308 89430579 -92984663 + L1MC4a LINE L1 6083 6351 -1457 2164 266 109 24 chr6 89430608 89431691 -92983551 + L1MC4a LINE L1 6418 7592 -216 210 37 0 0 chr6 89431721 89431748 -92983494 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 366 361 147 16 chr6 89433638 89434259 -92980983 + L2 LINE L2 1713 2414 -900 221 314 77 58 chr6 89434491 89434698 -92980544 + L2 LINE L2 2619 2829 -485 723 237 67 22 chr6 89434825 89435049 -92980193 + MLT1I LTR MaLR 1 234 -175 567 241 37 37 chr6 89435141 89435303 -92979939 + MIR SINE MIR 59 220 -42 310 323 83 8 chr6 89435598 89435731 -92979511 + MIR SINE MIR 104 246 -16 212 196 0 18 chr6 89437743 89437799 -92977443 + CT-rich Low_complexity Low_complexity 2 56 0 203 269 167 0 chr6 89437851 89437929 -92977313 + MIR SINE MIR 164 254 -8 819 211 23 12 chr6 89437996 89438167 -92977075 - MER5A DNA MER1_type -16 173 1 239 229 193 0 chr6 89438179 89438262 -92976980 + MER117 DNA MER1_type 5 103 -94 271 313 156 31 chr6 89438603 89438763 -92976479 - MIR SINE MIR -71 191 12 1277 243 4 0 chr6 89438917 89439180 -92976062 + Tigger7 DNA MER2_type 1 264 -2223 450 243 0 10 chr6 89439180 89439283 -92975959 + Tigger7 DNA MER2_type 2386 2487 0 560 273 113 75 chr6 89441594 89442100 -92973142 - L1MC4a LINE L1 -1859 5949 5425 328 248 152 0 chr6 89442290 89442395 -92972847 - L3 LINE CR1 -753 824 704 1345 238 30 7 chr6 89443767 89444070 -92971172 - AluJo SINE Alu 0 312 3 393 235 0 0 chr6 89444130 89444215 -92971027 - MIR SINE MIR -12 250 166 378 247 21 0 chr6 89444415 89444508 -92970734 - MLT1J2 LTR MaLR -287 163 69 235 224 122 0 chr6 89444549 89444598 -92970644 - MIR SINE MIR -90 172 118 29256 114 13 57 chr6 89446078 89452530 -92962712 + L1PA7 LINE L1 2 6152 -2 396 217 33 103 chr6 89452734 89452966 -92962276 + MER21B LTR ERV1 141 356 -249 21 0 0 0 chr6 89453100 89453121 -92962121 + AT_rich Low_complexity Low_complexity 1 21 0 461 268 26 39 chr6 89453153 89453306 -92961936 - L2 LINE L2 -9 3304 3154 280 336 66 82 chr6 89453448 89453704 -92961538 - L2 LINE L2 -360 2954 2703 506 250 0 9 chr6 89453707 89453823 -92961419 - L2 LINE L2 -10 3303 3189 311 328 107 17 chr6 89454076 89454253 -92960989 + L1M4 LINE L1 4969 5161 -985 1532 219 7 11 chr6 89454258 89454545 -92960697 + AluJo SINE Alu 2 287 -25 22 0 0 0 chr6 89454545 89454567 -92960675 + AT_rich Low_complexity Low_complexity 1 22 0 622 340 123 46 chr6 89455094 89455664 -92959578 - L2 LINE L2 -2 3270 2746 2795 10 0 6 chr6 89455664 89455977 -92959265 + AluY SINE Alu 1 311 0 622 340 123 46 chr6 89455977 89456365 -92958877 - L2 LINE L2 -526 2746 2214 2182 110 7 0 chr6 89456365 89456655 -92958587 + AluSc SINE Alu 1 292 -17 622 340 123 46 chr6 89456655 89456816 -92958426 - L2 LINE L2 -1058 2214 2067 901 238 18 14 chr6 89457439 89457662 -92957580 + MIR SINE MIR 28 251 -11 368 268 125 0 chr6 89457769 89457881 -92957361 + L2 LINE L2 3188 3313 0 522 0 0 0 chr6 89458092 89458150 -92957092 + (CA)n Simple_repeat Simple_repeat 1 58 0 2168 103 7 13 chr6 89458234 89458535 -92956707 - AluY SINE Alu -12 299 1 430 319 86 12 chr6 89459396 89459559 -92955683 - L2 LINE L2 0 3313 3139 1686 234 46 67 chr6 89459833 89460398 -92954844 - MLT2B3 LTR ERVL -1 553 1 24763 90 21 22 chr6 89460398 89461154 -92954088 - HERVL-B3-B3 LTR ERVL 0 5654 4899 3708 43 0 0 chr6 89461154 89461600 -92953642 - L1PA4 LINE L1 -8 6147 5702 24763 90 21 22 chr6 89461600 89464495 -92950747 - HERVL-B3-B3 LTR ERVL -755 4899 2006 1112 148 48 39 chr6 89464495 89464725 -92950517 - THE1B LTR MaLR 0 364 133 7125 120 0 0 chr6 89464725 89465788 -92949454 - HERVL-B3-B3 LTR ERVL -4591 1063 1 1739 234 51 60 chr6 89465791 89466343 -92948899 - MLT2B3 LTR ERVL -7 547 1 279 238 113 0 chr6 89467088 89467168 -92948074 + L2 LINE L2 3223 3311 -2 277 353 60 0 chr6 89467736 89467852 -92947390 - MIR SINE MIR -66 142 20 263 290 84 37 chr6 89468376 89468483 -92946759 + MIR SINE MIR 22 133 -75 302 363 66 38 chr6 89470126 89470338 -92944904 + L2 LINE L2 2869 3086 -186 263 276 164 0 chr6 89470439 89470555 -92944687 + L2 LINE L2 3179 3313 0 199 154 31 15 chr6 89471514 89471579 -92943663 + A-rich Low_complexity Low_complexity 5 70 0 2121 120 0 3 chr6 89472995 89473295 -92941947 - AluSg1 SINE Alu -10 299 1 305 250 91 0 chr6 89473641 89473729 -92941513 + MIR SINE MIR 94 189 -73 305 263 25 51 chr6 89473732 89473850 -92941392 - MER117 DNA MER1_type -61 136 22 242 292 0 42 chr6 89474341 89474413 -92940829 - L3 LINE CR1 -3 1574 1506 2328 189 102 19 chr6 89475388 89476053 -92939189 - Charlie1a DNA MER1_type 0 1455 658 1278 217 4 4 chr6 89476056 89476309 -92938933 - Charlie1a DNA MER1_type -1202 253 1 293 226 0 16 chr6 89476510 89476572 -92938670 + MIR SINE MIR 100 160 -102 539 376 96 22 chr6 89479365 89479687 -92935555 - L2 LINE L2 -4 3268 2923 5397 127 36 22 chr6 89479687 89481278 -92933964 + L1PA15 LINE L1 4568 6165 0 265 135 0 5 chr6 89481603 89481862 -92933380 + AluSc SINE Alu 5 302 0 400 271 113 35 chr6 89482234 89482463 -92932779 - L2 LINE L2 -1269 2045 1799 765 254 86 91 chr6 89482467 89482853 -92932389 - MLT1I LTR MaLR 0 409 26 186 143 0 0 chr6 89484910 89484938 -92930304 + MIR SINE MIR 222 249 -13 270 284 78 10 chr6 89487122 89487224 -92928018 - MIR SINE MIR -67 195 87 2253 115 3 0 chr6 89487699 89488003 -92927239 - AluSq SINE Alu -8 305 1 336 266 122 14 chr6 89488479 89488618 -92926624 - MIR SINE MIR -53 209 56 206 222 0 0 chr6 89489131 89489176 -92926066 + MIR SINE MIR 170 214 -48 271 234 205 72 chr6 89489498 89489972 -92925270 - L1ME4a LINE L1 0 6121 5585 270 289 73 29 chr6 89490126 89490330 -92924912 - L1ME4a LINE L1 -748 5398 5186 551 308 91 45 chr6 89490440 89491024 -92924218 + L1M4 LINE L1 2111 2721 -3425 1588 188 55 12 chr6 89491160 89491490 -92923752 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr6 89491510 89491531 -92923711 + AT_rich Low_complexity Low_complexity 1 21 0 233 318 47 28 chr6 89491671 89491778 -92923464 + L3 LINE CR1 912 1020 -557 511 290 175 19 chr6 89492428 89492794 -92922448 + L3 LINE CR1 1048 1470 -107 7273 32 11 0 chr6 89492835 89493984 -92921258 - L1PA5 LINE L1 -5 6149 5022 269 291 101 0 chr6 89494149 89494228 -92921014 - L2 LINE L2 0 3272 3186 220 145 16 16 chr6 89495048 89495110 -92920132 + CT-rich Low_complexity Low_complexity 1 62 0 663 78 0 0 chr6 89495115 89495205 -92920037 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 426 318 150 5 chr6 89496694 89496914 -92918328 - MIR SINE MIR -3 259 8 5337 214 136 40 chr6 89497775 89499809 -92915433 + L1MD1 LINE L1 18 2365 -4175 529 37 73 0 chr6 89499809 89499918 -92915324 + (TA)n Simple_repeat Simple_repeat 2 118 0 5337 214 136 40 chr6 89499918 89500164 -92915078 + L1MD1 LINE L1 2365 2586 -3954 * 6149 213 34 35 chr6 89500154 89502870 -92912372 + L1MD1 LINE L1 3869 6585 -51 440 128 143 68 chr6 89502888 89503021 -92912221 - FLAM_C SINE Alu 0 143 1 317 264 98 11 chr6 89503266 89503440 -92911802 - L1MC4a LINE L1 -1763 6045 5857 418 309 36 43 chr6 89503891 89504192 -92911050 - HAL1b LINE L1 -768 580 282 29 28 0 0 chr6 89504215 89504251 -92910991 + AT_rich Low_complexity Low_complexity 1 36 0 2227 106 0 0 chr6 89504894 89505209 -92910033 - AluSp SINE Alu 0 317 3 472 321 128 45 chr6 89505675 89506383 -92908859 + L2 LINE L2 2111 2877 -437 449 294 59 24 chr6 89506415 89506585 -92908657 + MLT1G1 LTR MaLR 16 191 -404 180 0 0 0 chr6 89506619 89506639 -92908603 + (TC)n Simple_repeat Simple_repeat 2 21 0 513 270 37 29 chr6 89506666 89506834 -92908408 - MIR SINE MIR -28 180 10 614 193 116 14 chr6 89507030 89507237 -92908005 + HAL1 LINE L1 2111 2338 -169 21 36 0 0 chr6 89507371 89507399 -92907843 + AT_rich Low_complexity Low_complexity 1 28 0 319 66 311 0 chr6 89507911 89507972 -92907270 - MADE1 DNA Mariner 0 80 1 2476 226 52 25 chr6 89507973 89508442 -92906800 + L1ME2 LINE L1 5398 5896 -268 2020 159 23 21 chr6 89508442 89508831 -92906411 + MLT1B LTR MaLR 1 390 0 2476 226 52 25 chr6 89508831 89509094 -92906148 + L1ME2 LINE L1 5896 6150 -14 284 74 0 0 chr6 89509899 89509949 -92905293 - L1PA2 LINE L1 0 6155 6105 3685 112 9 6 chr6 89510852 89511395 -92903847 - L1PA11 LINE L1 0 6174 5630 1829 149 102 15 chr6 89511747 89512082 -92903160 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr6 89513619 89513641 -92901601 + AT_rich Low_complexity Low_complexity 1 22 0 415 245 42 122 chr6 89515165 89515444 -92899798 - L2 LINE L2 -214 3058 2791 226 232 0 87 chr6 89515470 89515539 -92899703 + MER112 DNA MER1_type 23 85 -175 391 266 47 18 chr6 89515539 89515708 -92899534 - MER112 DNA MER1_type -49 211 38 278 206 29 15 chr6 89515709 89515777 -92899465 + MER112 DNA MER1_type 181 249 -11 220 312 57 64 chr6 89515909 89516066 -92899176 - L2 LINE L2 -670 2644 2489 605 292 70 51 chr6 89516144 89516517 -92898725 + HAL1b LINE L1 328 707 -641 25 0 0 0 chr6 89516597 89516622 -92898620 + AT_rich Low_complexity Low_complexity 1 25 0 186 133 0 0 chr6 89517612 89517642 -92897600 + (TAAAAA)n Simple_repeat Simple_repeat 1 30 0 29 0 0 0 chr6 89517996 89518025 -92897217 + AT_rich Low_complexity Low_complexity 1 29 0 313 277 104 58 chr6 89518428 89518688 -92896554 + L1M4 LINE L1 4881 5152 -994 230 301 15 15 chr6 89519151 89519287 -92895955 + (TA)n Simple_repeat Simple_repeat 2 137 0 223 306 63 18 chr6 89520272 89520383 -92894859 - L2 LINE L2 -3 3269 3154 231 395 117 22 chr6 89520692 89521315 -92893927 + L2 LINE L2 1786 2467 -847 208 233 70 0 chr6 89521385 89521428 -92893814 + MIR3 SINE MIR 114 159 -49 217 317 0 0 chr6 89521522 89521582 -92893660 + L2 LINE L2 3253 3312 -1 948 213 68 89 chr6 89522860 89523254 -92891988 - MLT1C LTR MaLR -2 465 3 2229 109 0 7 chr6 89523595 89523889 -92891353 + AluSq SINE Alu 1 292 -21 21 0 0 0 chr6 89523889 89523910 -92891332 + AT_rich Low_complexity Low_complexity 1 21 0 568 307 11 0 chr6 89523926 89524102 -92891140 + L1M3c LINE L1 1356 1533 -5963 * 2866 242 46 36 chr6 89524094 89525121 -92890121 + L1M3c LINE L1 1818 2902 -4664 2039 154 6 3 chr6 89525121 89525433 -92889809 + AluSq SINE Alu 1 313 0 2866 242 46 36 chr6 89525433 89525760 -92889482 + L1M3c LINE L1 2902 3224 -4342 * 3102 230 42 70 chr6 89525756 89526588 -92888654 + L1M3c LINE L1 3055 3909 -3656 1240 211 98 16 chr6 89526588 89526906 -92888336 - MER2 DNA MER2_type 0 344 1 3102 230 42 70 chr6 89526906 89527538 -92887704 + L1M3c LINE L1 3909 4504 -3061 2027 150 0 0 chr6 89527538 89527838 -92887404 - AluY SINE Alu -11 300 1 3102 230 42 70 chr6 89527838 89528126 -92887116 + L1M3c LINE L1 4504 4799 -2766 3080 176 33 16 chr6 89528135 89528628 -92886614 + L1M3c LINE L1 5174 5684 -1881 189 0 0 0 chr6 89528628 89528649 -92886593 + (CA)n Simple_repeat Simple_repeat 2 22 0 3080 176 33 16 chr6 89528649 89528861 -92886381 + L1M3c LINE L1 5684 5891 -1674 1957 112 7 13 chr6 89528911 89529216 -92886026 + AluSp SINE Alu 1 303 -10 243 207 268 12 chr6 89531311 89531393 -92883849 + MER5A DNA MER1_type 4 106 -83 2053 169 32 9 chr6 89531920 89532251 -92882991 - L1MB3 LINE L1 -67 6116 5772 1483 105 18 0 chr6 89532251 89532480 -92882762 - L1PA14 LINE L1 -2 6159 5927 2053 169 32 9 chr6 89532480 89532573 -92882669 - L1MB3 LINE L1 -411 5772 5683 228 111 0 0 chr6 89534175 89534211 -92881031 + U6 snRNA snRNA 1 36 -71 6545 80 8 0 chr6 89534503 89535696 -92879546 + L1PA7 LINE L1 4942 6141 -13 27 0 0 0 chr6 89535696 89535723 -92879519 + AT_rich Low_complexity Low_complexity 1 27 0 463 306 12 6 chr6 89536375 89536535 -92878707 - MIR SINE MIR -1 261 101 22 0 0 0 chr6 89536570 89536592 -92878650 + AT_rich Low_complexity Low_complexity 1 22 0 2099 132 0 0 chr6 89537331 89537633 -92877609 - AluSc SINE Alu 0 302 1 1988 173 28 23 chr6 89537633 89538031 -92877211 + MLT2D LTR ERVL 2 401 -13 1762 173 64 0 chr6 89538823 89539106 -92876136 - AluJb SINE Alu -11 301 1 368 326 54 0 chr6 89539362 89539491 -92875751 + MIR SINE MIR 53 188 -74 210 233 137 0 chr6 89539535 89539608 -92875634 + L2 LINE L2 3186 3268 -4 383 242 52 117 chr6 89540659 89540890 -92874352 - L2 LINE L2 -1 3312 3097 197 350 10 21 chr6 89543635 89543732 -92871510 - MIR SINE MIR -110 152 57 306 0 0 0 chr6 89544506 89544540 -92870702 + (CA)n Simple_repeat Simple_repeat 2 35 0 3272 28 3 0 chr6 89545413 89545800 -92869442 - L1PA4 LINE L1 -3 6152 5765 2192 122 0 3 chr6 89547102 89547397 -92867845 + AluSx SINE Alu 2 295 -17 348 348 81 45 chr6 89547504 89547751 -92867491 + MIR SINE MIR 7 262 0 643 231 23 35 chr6 89548293 89548466 -92866776 - MER63A DNA MER1_type 0 210 40 275 344 128 9 chr6 89550247 89550474 -92864768 + L2 LINE L2 2716 2969 -345 1537 216 0 3 chr6 89552067 89552363 -92862879 - MLT1A1 LTR MaLR 0 365 71 278 83 0 0 chr6 89552360 89552396 -92862846 - U2 snRNA snRNA -152 36 1 * 339 119 104 0 chr6 89552444 89552511 -92862731 - MLT1A1 LTR MaLR -291 74 1 465 110 0 0 chr6 89553904 89553986 -92861256 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 2151 107 3 50 chr6 89554229 89554547 -92860695 + AluSp SINE Alu 1 303 -10 39857 60 4 1 chr6 89555111 89561240 -92854002 - L1PA5 LINE L1 0 6154 11 701 303 114 41 chr6 89561619 89562226 -92853016 + L2 LINE L2 2462 3135 -178 1908 99 55 4 chr6 89562226 89562498 -92852744 - AluSq SINE Alu -27 286 1 701 303 114 41 chr6 89562498 89562692 -92852550 + L2 LINE L2 3135 3313 0 393 252 59 7 chr6 89562777 89562912 -92852330 - MER63 DNA MER1_type -50 786 19 1821 207 31 26 chr6 89562965 89563194 -92852048 + L1MB3 LINE L1 4902 5128 -1141 2051 121 7 0 chr6 89563194 89563476 -92851766 + AluSg SINE Alu 1 284 -26 258 32 0 0 chr6 89563477 89563508 -92851734 + (TA)n Simple_repeat Simple_repeat 2 32 0 1821 207 31 26 chr6 89563508 89563890 -92851352 + L1MB3 LINE L1 5127 5524 -745 3471 148 18 55 chr6 89563916 89564639 -92850603 + L1MB3 LINE L1 5487 6182 -1 319 327 55 0 chr6 89566344 89566454 -92848788 - L2 LINE L2 0 3272 3157 311 314 144 0 chr6 89567176 89567294 -92847948 - L2 LINE L2 -2 3270 3136 651 312 95 0 chr6 89568596 89568817 -92846425 - MIR SINE MIR -19 243 2 254 289 0 48 chr6 89569303 89569386 -92845856 + L2 LINE L2 3234 3312 -1 327 222 16 8 chr6 89569786 89569901 -92845341 + (TA)n Simple_repeat Simple_repeat 1 119 -8 234 0 0 0 chr6 89569901 89569927 -92845315 + (TG)n Simple_repeat Simple_repeat 2 27 0 327 222 16 8 chr6 89569927 89569937 -92845305 + (TA)n Simple_repeat Simple_repeat 119 127 0 790 311 128 52 chr6 89570573 89571464 -92843778 + L2 LINE L2 200 1158 -2156 22879 131 36 21 chr6 89571502 89573598 -92841644 + L1PA8A LINE L1 1 2064 -4382 2555 59 6 0 chr6 89573598 89573921 -92841321 - L1PA5 LINE L1 -1 6153 5829 22879 131 36 21 chr6 89573921 89578101 -92837141 + L1PA8A LINE L1 2064 6446 0 404 331 62 31 chr6 89578127 89578417 -92836825 + L2 LINE L2 1218 1516 -1798 1436 153 148 58 chr6 89578418 89578783 -92836459 + MSTB LTR MaLR 1 398 -28 693 145 17 0 chr6 89578783 89578900 -92836342 + MSTB LTR MaLR 308 426 0 203 311 94 62 chr6 89578902 89579146 -92836096 + L2 LINE L2 1515 1766 -1548 18093 60 2 2 chr6 89579401 89581896 -92833346 - L1P LINE L1 -2474 3672 1177 601 293 35 35 chr6 89581896 89582183 -92833059 - MLT1I LTR MaLR -17 392 106 2016 122 0 43 chr6 89583399 89583703 -92831539 + AluSx SINE Alu 5 295 -17 201 74 0 0 chr6 89583737 89583764 -92831478 + (CA)n Simple_repeat Simple_repeat 2 28 0 350 115 16 0 chr6 89583808 89583869 -92831373 + (TG)n Simple_repeat Simple_repeat 1 62 0 303 333 0 0 chr6 89583870 89583960 -92831282 - L1MC4 LINE L1 -1339 6703 6614 * 316 238 95 0 chr6 89583886 89583970 -92831272 + L1MC4 LINE L1 6614 6705 -1337 23 0 0 0 chr6 89584054 89584077 -92831165 + AT_rich Low_complexity Low_complexity 1 23 0 1247 148 0 16 chr6 89584916 89585105 -92830137 + AluY SINE Alu 3 188 -123 1075 158 15 25 chr6 89585228 89585430 -92829812 - AluJo SINE Alu -99 213 14 1414 142 18 5 chr6 89585430 89585649 -92829593 - AluSg/x SINE Alu -7 303 82 926 155 28 0 chr6 89586059 89586240 -92829002 - MER53 DNA DNA 0 189 4 274 322 156 37 chr6 89587647 89588169 -92827073 - L2 LINE L2 -38 3275 2692 21 0 0 0 chr6 89588457 89588478 -92826764 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 89588506 89588533 -92826709 + AT_rich Low_complexity Low_complexity 1 27 0 232 290 84 53 chr6 89588570 89588701 -92826541 - MIR SINE MIR -109 153 19 321 228 69 20 chr6 89589551 89589652 -92825590 - L1ME LINE L1 -339 5782 5677 372 319 61 48 chr6 89591286 89591515 -92823727 + MIR SINE MIR 16 247 -15 247 281 49 24 chr6 89591530 89591612 -92823630 + L2 LINE L2 3141 3224 -48 248 370 29 29 chr6 89592073 89592211 -92823031 + L2 LINE L2 2922 3059 -213 339 286 88 61 chr6 89592592 89592934 -92822308 - MLT1J LTR MaLR -160 351 1 5784 119 27 23 chr6 89594683 89595860 -92819382 - L1MA4A LINE L1 0 6303 5122 993 190 26 17 chr6 89595852 89596084 -92819158 - L1 LINE L1 -907 5239 5006 * 180 0 0 0 chr6 89596105 89596125 -92819117 + (A)n Simple_repeat Simple_repeat 1 20 0 1068 139 60 9 chr6 89596127 89596342 -92818900 + L1 LINE L1 3684 3909 -2237 8818 179 37 32 chr6 89596350 89598591 -92816651 - L1 LINE L1 -1145 5001 2750 14768 34 1 0 chr6 89598691 89601227 -92814015 + L1PA4 LINE L1 3614 6150 -5 2005 131 0 0 chr6 89601339 89601645 -92813597 + AluSx SINE Alu 3 308 0 288 217 14 72 chr6 89601653 89601767 -92813475 - L1MC5 LINE L1 -325 7636 7530 2002 163 9 3 chr6 89601767 89602110 -92813132 + MER7A DNA MER2_type 4 346 0 288 217 14 72 chr6 89602110 89602133 -92813109 - L1MC5 LINE L1 -431 7530 7507 405 278 107 16 chr6 89602143 89602330 -92812912 - L1MC4 LINE L1 0 8042 7839 1769 129 21 96 chr6 89602378 89602710 -92812532 - AluYb8 SINE Alu -11 307 1 721 197 11 49 chr6 89602722 89602905 -92812337 - L1ME2 LINE L1 -10 6154 5979 2514 219 19 71 chr6 89602945 89603031 -92812211 - L1M4 LINE L1 -2796 3350 3261 1804 230 31 33 chr6 89603031 89603188 -92812054 + LTR40a LTR ERVL 1 157 -362 204 67 0 0 chr6 89603188 89603218 -92812024 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1804 230 31 33 chr6 89603218 89603578 -92811664 + LTR40a LTR ERVL 157 517 -2 2514 219 19 71 chr6 89603578 89603617 -92811625 - L1M4 LINE L1 -2885 3261 3222 1968 114 13 50 chr6 89603617 89603934 -92811308 - AluSq SINE Alu -8 305 1 2514 219 19 71 chr6 89603934 89604563 -92810679 - L1M4 LINE L1 -2924 3222 2653 1667 201 38 104 chr6 89604563 89605120 -92810122 - MLT2B1 LTR ERVL 0 520 1 2514 219 19 71 chr6 89605120 89605326 -92809916 - L1M4 LINE L1 -3493 2653 2438 2336 101 3 3 chr6 89605412 89605719 -92809523 - AluSc SINE Alu -2 307 1 36 0 0 0 chr6 89605768 89605804 -92809438 + AT_rich Low_complexity Low_complexity 1 36 0 2342 99 3 0 chr6 89605815 89606117 -92809125 - AluSp SINE Alu -10 303 1 226 214 29 0 chr6 89606118 89606188 -92809054 - L1M4 LINE L1 -3765 2381 2310 843 203 51 0 chr6 89606205 89606363 -92808879 - AluJo/FRAM SINE Alu 0 302 137 1262 157 85 58 chr6 89606366 89606433 -92808809 - AluSq SINE Alu 0 313 249 192 77 0 0 chr6 89606433 89606459 -92808783 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1262 157 85 58 chr6 89606459 89606685 -92808557 - AluSq SINE Alu -64 249 12 949 112 53 18 chr6 89606697 89606866 -92808376 - MER41B LTR ERV1 -460 175 1 * 1790 137 48 54 chr6 89606866 89607015 -92808227 - MER21A LTR ERV1 -223 708 560 2376 90 3 0 chr6 89607015 89607326 -92807916 - AluSp SINE Alu -1 312 1 1790 137 48 54 chr6 89607326 89607510 -92807732 - MER21A LTR ERV1 -371 560 377 1181 119 173 4 chr6 89607516 89607742 -92807500 - MER21A LTR ERV1 -667 264 1 2306 121 0 0 chr6 89607867 89608174 -92807068 - AluSq SINE Alu -6 307 1 602 298 56 10 chr6 89608693 89608718 -92806524 - MIR SINE MIR -34 228 206 201 26 79 0 chr6 89608718 89608756 -92806486 + (TA)n Simple_repeat Simple_repeat 1 41 0 602 298 56 10 chr6 89608756 89608928 -92806314 - MIR SINE MIR -56 206 22 2046 76 29 11 chr6 89609817 89610115 -92805127 - AluY SINE Alu 0 303 1 23 33 0 0 chr6 89610146 89610176 -92805066 + AT_rich Low_complexity Low_complexity 1 30 0 357 231 90 15 chr6 89610217 89610351 -92804891 - L1ME4a LINE L1 -3 6118 5975 216 259 0 37 chr6 89610748 89610802 -92804440 + L2 LINE L2 3229 3280 -33 1563 140 13 96 chr6 89610825 89611139 -92804103 - AluJb SINE Alu -24 288 1 447 222 92 33 chr6 89611207 89611360 -92803882 - MIR SINE MIR -9 253 92 2424 58 7 7 chr6 89611510 89611818 -92803424 - AluY SINE Alu -3 308 1 240 252 0 99 chr6 89611898 89612009 -92803233 + MIR3 SINE MIR 15 114 -94 185 256 47 0 chr6 89612184 89612227 -92803015 - L2 LINE L2 -6 3266 3222 1145 88 44 0 chr6 89614127 89614287 -92800955 + AluSg/x SINE Alu 135 301 -9 1240 86 69 11 chr6 89614288 89614463 -92800779 + AluSx SINE Alu 19 203 -109 1666 172 17 10 chr6 89615162 89615452 -92799790 - AluJb SINE Alu -20 292 1 185 324 70 0 chr6 89615684 89615755 -92799487 - L3 LINE CR1 -1027 550 475 207 412 18 9 chr6 89615821 89615935 -92799307 + MIR SINE MIR 1 115 -147 255 346 81 21 chr6 89616025 89616259 -92798983 - L2 LINE L2 -1007 2307 2060 207 320 72 21 chr6 89616347 89616444 -92798798 - L2 LINE L2 -1357 1957 1856 339 335 117 30 chr6 89616516 89616746 -92798496 - MIR SINE MIR 0 262 13 570 151 32 0 chr6 89617036 89617129 -92798113 - Tigger7 DNA MER2_type -1 2486 2391 1160 216 26 37 chr6 89617130 89617399 -92797843 - Tigger7 DNA MER2_type -467 266 1 2536 44 7 0 chr6 89617473 89617766 -92797476 - AluY SINE Alu -13 298 4 216 0 0 0 chr6 89617768 89617792 -92797450 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1973 114 29 0 chr6 89617792 89618064 -92797178 - AluSc SINE Alu -29 280 1 303 119 153 0 chr6 89618198 89618257 -92796985 - MADE1 DNA Mariner 0 80 13 351 127 0 42 chr6 89618326 89618344 -92796898 + MADE1 DNA Mariner 13 30 -50 2388 91 3 0 chr6 89618344 89618641 -92796601 - AluSp SINE Alu -15 298 1 351 127 0 42 chr6 89618641 89618693 -92796549 + MADE1 DNA Mariner 30 80 0 358 312 53 29 chr6 89619105 89619275 -92795967 - L1M4 LINE L1 -1089 5057 4884 827 94 86 0 chr6 89619656 89619784 -92795458 + MER85 DNA T2_type 1 139 0 932 210 150 33 chr6 89620874 89621208 -92794034 - MER93b LTR ERV1 0 373 1 2307 84 0 13 chr6 89621260 89621569 -92793673 - AluY SINE Alu -6 305 1 1974 151 7 0 chr6 89621692 89621983 -92793259 + AluSx SINE Alu 1 293 -19 2057 125 0 10 chr6 89621988 89622283 -92792959 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr6 89622285 89622315 -92792927 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr6 89622448 89622468 -92792774 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2068 113 3 3 chr6 89622476 89622767 -92792475 - AluSx SINE Alu -21 291 1 1009 107 0 12 chr6 89623021 89623190 -92792052 + (CTA)n Simple_repeat Simple_repeat 2 168 0 256 268 84 0 chr6 89623199 89623270 -92791972 + MIR SINE MIR 88 164 -98 558 221 27 47 chr6 89624397 89624546 -92790696 - L2 LINE L2 -12 3301 3156 2232 105 0 6 chr6 89624555 89624869 -92790373 + AluSx SINE Alu 1 312 0 2093 125 7 0 chr6 89625117 89625414 -92789828 - AluSq SINE Alu -13 300 2 2110 96 0 4 chr6 89625570 89625851 -92789391 + AluSg SINE Alu 1 280 -30 26 30 0 0 chr6 89625877 89625910 -92789332 + AT_rich Low_complexity Low_complexity 1 33 0 2222 91 10 10 chr6 89626093 89626400 -92788842 + AluSp SINE Alu 1 307 -6 25 0 0 0 chr6 89626423 89626448 -92788794 + AT_rich Low_complexity Low_complexity 1 25 0 548 119 0 0 chr6 89626590 89626674 -92788568 + AluS SINE Alu 1 84 -228 1906 104 16 63 chr6 89626700 89627017 -92788225 + AluSx SINE Alu 1 302 -10 1667 183 0 17 chr6 89627400 89627551 -92787691 - AluJb SINE Alu -28 284 139 2188 91 10 16 chr6 89627551 89627858 -92787384 - AluSp SINE Alu -8 305 1 1667 183 0 17 chr6 89627858 89627995 -92787247 - AluJb SINE Alu -173 139 1 734 154 0 46 chr6 89628536 89628666 -92786576 + FLAM_C SINE Alu 3 126 -7 27 49 0 0 chr6 89628844 89628885 -92786357 + AT_rich Low_complexity Low_complexity 1 41 0 543 197 77 8 chr6 89630612 89630729 -92784513 - MER94 DNA DNA -5 129 5 270 279 44 73 chr6 89631112 89631248 -92783994 - MER117 DNA MER1_type -55 142 11 315 377 25 6 chr6 89631412 89631571 -92783671 - L2 LINE L2 -2905 409 248 2489 57 0 0 chr6 89631808 89632104 -92783138 + AluY SINE Alu 1 296 -15 42 20 0 0 chr6 89632857 89632906 -92782336 + AT_rich Low_complexity Low_complexity 1 49 0 2467 84 3 0 chr6 89633823 89634134 -92781108 + AluSp SINE Alu 1 312 -1 519 194 32 201 chr6 89634412 89634690 -92780552 - MIR SINE MIR -1 261 31 2019 101 7 40 chr6 89635388 89635711 -92779531 - AluSx SINE Alu 0 313 1 367 197 30 0 chr6 89635932 89635998 -92779244 - MER69 DNA AcHobo -2458 68 1 319 230 27 0 chr6 89636111 89636185 -92779057 + MER20 DNA MER1_type 144 219 0 302 250 112 40 chr6 89636314 89636466 -92778776 + MER117 DNA MER1_type 27 189 -8 1661 172 35 0 chr6 89636762 89637052 -92778190 - AluJb SINE Alu -12 300 1 831 129 0 23 chr6 89637814 89637946 -92777296 - FLAM_C SINE Alu -3 130 2 22 70 0 0 chr6 89638252 89638295 -92776947 + AT_rich Low_complexity Low_complexity 1 43 0 2046 125 0 16 chr6 89638542 89638845 -92776397 - AluSx SINE Alu -13 299 2 22 0 0 0 chr6 89639376 89639398 -92775844 + AT_rich Low_complexity Low_complexity 1 22 0 1844 147 11 0 chr6 89639399 89639684 -92775558 - AluSx SINE Alu -24 288 1 387 0 0 0 chr6 89639748 89639791 -92775451 + (TG)n Simple_repeat Simple_repeat 2 44 0 2041 136 7 0 chr6 89640500 89640801 -92774441 - AluSx SINE Alu -9 303 1 38 81 0 0 chr6 89641038 89641125 -92774117 + AT_rich Low_complexity Low_complexity 1 87 0 30 27 0 0 chr6 89641170 89641207 -92774035 + AT_rich Low_complexity Low_complexity 1 37 0 1097 73 33 0 chr6 89641461 89641612 -92773630 + L1PA11 LINE L1 6019 6174 0 361 273 45 45 chr6 89642874 89643028 -92772214 + L2 LINE L2 3158 3311 -2 241 399 45 38 chr6 89643175 89643308 -92771934 - L2 LINE L2 -6 3266 3133 293 342 58 18 chr6 89643512 89643809 -92771433 + L2 LINE L2 2346 2695 -619 420 269 21 0 chr6 89643886 89643979 -92771263 + L2 LINE L2 3117 3211 -61 2086 120 20 0 chr6 89644924 89645224 -92770018 - AluSx SINE Alu -6 306 1 504 196 36 18 chr6 89645466 89645578 -92769664 - MER81 DNA DNA 0 114 1 21 57 0 0 chr6 89645779 89645814 -92769428 + AT_rich Low_complexity Low_complexity 1 35 0 1706 50 0 0 chr6 89646570 89646772 -92768470 + AluY SINE Alu 97 298 -13 207 220 0 0 chr6 89646832 89646882 -92768360 + CT-rich Low_complexity Low_complexity 2 51 0 281 152 0 22 chr6 89647137 89647183 -92768059 - FRAM/FAM SINE Alu -93 82 38 2041 133 0 3 chr6 89647400 89647702 -92767540 + AluSx SINE Alu 1 301 -11 1930 122 39 7 chr6 89648443 89648729 -92766513 + AluSx SINE Alu 1 295 -17 28 0 0 0 chr6 89649648 89649676 -92765566 + AT_rich Low_complexity Low_complexity 1 28 0 216 97 0 0 chr6 89649785 89649816 -92765426 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 33 0 0 0 chr6 89650020 89650053 -92765189 + AT_rich Low_complexity Low_complexity 1 33 0 806 159 8 8 chr6 89650053 89650185 -92765057 - FLAM_C SINE Alu -11 132 1 675 103 41 0 chr6 89650288 89650385 -92764857 + U6 snRNA snRNA 1 101 -6 243 378 64 54 chr6 89650709 89650913 -92764329 - L2 LINE L2 -53 3219 3014 7046 199 36 27 chr6 89650997 89651970 -92763272 - L1MB7 LINE L1 -19 6663 5700 1720 142 11 18 chr6 89651970 89652251 -92762991 - AluJo SINE Alu -15 297 19 7046 199 36 27 chr6 89652251 89652426 -92762816 - L1MB7 LINE L1 -982 5700 5528 1531 200 33 12 chr6 89652426 89652497 -92762745 - L1MA9 LINE L1 -5 6307 6239 197 83 28 0 chr6 89652497 89652533 -92762709 + (TA)n Simple_repeat Simple_repeat 2 38 0 1531 200 33 12 chr6 89652533 89652796 -92762446 - L1MA9 LINE L1 -73 6239 5966 7046 199 36 27 chr6 89652796 89654321 -92760921 - L1MB7 LINE L1 -1154 5528 3972 1239 270 75 30 chr6 89654342 89654771 -92760471 - L1MB7 LINE L1 -6088 454 7 203 325 0 0 chr6 89654813 89654890 -92760352 + T-rich Low_complexity Low_complexity 1 77 0 1975 137 7 0 chr6 89654944 89655243 -92759999 - AluSx SINE Alu -11 301 1 399 227 117 32 chr6 89655928 89656082 -92759160 - MER104 DNA Tc2 -3 177 11 183 162 0 0 chr6 89657568 89657605 -92757637 + (TA)n Simple_repeat Simple_repeat 1 37 0 304 330 0 0 chr6 89658576 89658664 -92756578 - MIR SINE MIR -16 246 159 2098 128 0 10 chr6 89658703 89659007 -92756235 + AluSx SINE Alu 1 301 -11 25 51 0 0 chr6 89659491 89659530 -92755712 + AT_rich Low_complexity Low_complexity 1 39 0 668 188 8 8 chr6 89659828 89659961 -92755281 + FLAM_C SINE Alu 1 133 0 229 244 0 0 chr6 89660150 89660195 -92755047 + T-rich Low_complexity Low_complexity 1 45 0 266 310 0 0 chr6 89660387 89660458 -92754784 + HAL1 LINE L1 3 73 -2434 370 326 36 57 chr6 89660737 89661084 -92754158 - L2 LINE L2 -181 3091 2688 553 271 57 104 chr6 89661306 89661464 -92753778 - L1MC4 LINE L1 0 8042 7878 228 35 0 0 chr6 89661464 89661493 -92753749 + (CA)n Simple_repeat Simple_repeat 2 30 0 553 271 57 104 chr6 89661493 89661899 -92753343 - L1MC4 LINE L1 -164 7878 7505 411 309 142 0 chr6 89662563 89662725 -92752517 - MIR3 SINE MIR -6 202 18 303 346 78 23 chr6 89662916 89663058 -92752184 + MARNA DNA Mariner 244 377 -209 2041 125 3 10 chr6 89663058 89663355 -92751887 + AluSg SINE Alu 1 295 -15 303 346 78 23 chr6 89663355 89663521 -92751721 + MARNA DNA Mariner 377 569 -17 1613 195 0 17 chr6 89665137 89665435 -92749807 - AluJb SINE Alu -19 293 1 264 238 0 32 chr6 89665989 89666052 -92749190 - L2 LINE L2 -1 3312 3252 24 32 0 0 chr6 89666701 89666732 -92748510 + AT_rich Low_complexity Low_complexity 1 31 0 2222 103 3 3 chr6 89666747 89667048 -92748194 + AluSx SINE Alu 1 301 -11 2221 102 7 0 chr6 89667617 89667911 -92747331 - AluSg SINE Alu -14 296 1 2244 106 0 0 chr6 89667961 89668264 -92746978 - AluSq SINE Alu -10 303 1 22 35 0 0 chr6 89668532 89668561 -92746681 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 89669664 89669687 -92745555 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr6 89669977 89670016 -92745226 + AT_rich Low_complexity Low_complexity 1 39 0 332 354 0 0 chr6 89670693 89670792 -92744450 - L2 LINE L2 -16 3297 3199 1928 251 108 20 chr6 89671011 89671681 -92743561 - HAL1 LINE L1 -587 1920 1176 2134 136 0 0 chr6 89671681 89671975 -92743267 - AluSx SINE Alu -12 300 7 1928 251 108 20 chr6 89671975 89672052 -92743190 - HAL1 LINE L1 -1331 1176 1107 949 282 51 7 chr6 89672124 89672418 -92742824 + L1ME3A LINE L1 5593 5899 -271 200 188 21 21 chr6 89672452 89672500 -92742742 + T-rich Low_complexity Low_complexity 5 52 0 340 298 110 91 chr6 89672532 89673277 -92741965 - HAL1 LINE L1 -1702 805 47 2298 118 0 0 chr6 89673513 89673818 -92741424 + AluSx SINE Alu 1 305 -7 1849 131 40 3 chr6 89674094 89674392 -92740850 - Tigger1 DNA MER2_type 0 2418 2110 * 3088 140 25 8 chr6 89674387 89674874 -92740368 - Tigger1 DNA MER2_type -1903 515 21 1324 178 121 0 chr6 89675185 89675449 -92739793 - AluJo SINE Alu -5 297 2 2283 104 0 10 chr6 89675522 89675829 -92739413 - AluSg SINE Alu -6 304 1 23 78 0 0 chr6 89676351 89676402 -92738840 + AT_rich Low_complexity Low_complexity 1 51 0 1053 203 58 14 chr6 89676655 89676996 -92738246 - MSTD LTR MaLR -2 394 2 419 197 17 34 chr6 89677031 89677148 -92738094 - L1M4 LINE L1 -1430 4716 4602 2104 140 0 6 chr6 89677287 89677601 -92737641 - AluSx SINE Alu 0 312 1 923 226 87 0 chr6 89677643 89677851 -92737391 - MLT1F1 LTR MaLR 0 567 342 868 260 138 24 chr6 89677851 89678532 -92736710 - L1ME LINE L1 -4787 1474 673 1083 277 36 39 chr6 89679026 89679466 -92735776 - L1ME1 LINE L1 -6 6160 5722 739 167 0 8 chr6 89679501 89679621 -92735621 - FLAM_C SINE Alu -24 119 1 442 167 0 0 chr6 89679733 89679811 -92735431 + AluJ/FRAM SINE Alu 223 300 -12 1786 138 7 31 chr6 89680176 89680491 -92734751 + AluJb SINE Alu 1 308 0 341 281 73 0 chr6 89680615 89680697 -92734545 - L2 LINE L2 -14 3258 3171 293 310 161 62 chr6 89680718 89681153 -92734089 + L2 LINE L2 1477 1954 -1360 450 323 151 57 chr6 89681237 89681871 -92733371 + L2 LINE L2 2219 2912 -402 295 353 17 9 chr6 89682089 89682205 -92733037 + L2 LINE L2 3197 3313 0 27 0 0 0 chr6 89682319 89682346 -92732896 + AT_rich Low_complexity Low_complexity 1 27 0 1958 132 3 20 chr6 89682879 89683015 -92732227 + AluSx SINE Alu 1 138 -174 2233 91 3 7 chr6 89683015 89683352 -92731890 + AluSp SINE Alu 1 336 0 1958 132 3 20 chr6 89683352 89683543 -92731699 + AluSx SINE Alu 138 312 0 25 0 0 0 chr6 89683709 89683734 -92731508 + AT_rich Low_complexity Low_complexity 1 25 0 2185 116 10 0 chr6 89684184 89684487 -92730755 - AluSq SINE Alu -7 306 1 2356 78 3 0 chr6 89684686 89684981 -92730261 - AluSp SINE Alu -17 296 1 278 308 44 0 chr6 89685340 89685431 -92729811 + MIR SINE MIR 100 194 -68 248 345 118 0 chr6 89685585 89685695 -92729547 - L2 LINE L2 -35 3237 3115 371 273 63 14 chr6 89685895 89686038 -92729204 + MIR SINE MIR 65 214 -48 248 340 147 47 chr6 89686275 89686507 -92728735 + L2 LINE L2 3014 3268 -4 * 421 296 63 38 chr6 89686503 89686662 -92728580 + MIR3 SINE MIR 37 199 -9 2124 147 0 0 chr6 89687427 89687733 -92727509 + AluSx SINE Alu 1 306 -6 465 248 23 23 chr6 89688662 89688795 -92726447 - LTR67 LTR ERVL 0 557 425 185 250 71 48 chr6 89689170 89689254 -92725988 + L3 LINE CR1 401 486 -1091 536 177 0 21 chr6 89691297 89691393 -92723849 - Alu SINE Alu -13 298 205 1930 149 7 0 chr6 89691798 89692087 -92723155 + AluSx SINE Alu 1 291 -21 2534 241 65 34 chr6 89692590 89693642 -92721600 - L1M4 LINE L1 -2381 3765 2682 207 194 0 0 chr6 89693891 89693922 -92721320 + MER5A DNA MER1_type 146 176 -13 646 246 123 17 chr6 89694067 89694303 -92720939 + LTR33 LTR ERVL 253 513 -8 2159 81 7 39 chr6 89694345 89694653 -92720589 - AluSq SINE Alu -15 298 1 672 209 81 7 chr6 89694969 89695117 -92720125 + MER5A DNA MER1_type 18 176 -13 1791 127 52 24 chr6 89696013 89696304 -92718938 - AluSg SINE Alu -11 299 1 816 246 103 54 chr6 89696310 89696659 -92718583 + HAL1 LINE L1 1604 1969 -538 2410 85 0 3 chr6 89696829 89697136 -92718106 - AluY SINE Alu -3 308 3 23 0 0 0 chr6 89697566 89697589 -92717653 + AT_rich Low_complexity Low_complexity 1 23 0 2537 33 0 10 chr6 89697744 89698085 -92717157 - AluY SINE Alu 0 338 1 23 0 0 0 chr6 89699423 89699446 -92715796 + AT_rich Low_complexity Low_complexity 1 23 0 2270 129 11 21 chr6 89699801 89700180 -92715062 + THE1C LTR MaLR 1 375 0 246 62 0 0 chr6 89700253 89700285 -92714957 + (CAT)n Simple_repeat Simple_repeat 1 32 0 345 24 0 0 chr6 89700700 89700742 -92714500 + (CA)n Simple_repeat Simple_repeat 2 43 0 485 178 84 0 chr6 89701000 89701107 -92714135 + MER103 DNA DNA 7 122 -44 276 272 136 20 chr6 89701268 89701415 -92713827 + MIR SINE MIR 97 260 -2 25 0 0 0 chr6 89701555 89701580 -92713662 + AT_rich Low_complexity Low_complexity 1 25 0 2169 180 27 19 chr6 89701599 89702077 -92713165 - L1MA4 LINE L1 -6 6294 5813 1866 101 30 0 chr6 89702115 89702383 -92712859 - L1PB1 LINE L1 -99 6052 5777 212 192 27 27 chr6 89702384 89702457 -92712785 + (TA)n Simple_repeat Simple_repeat 2 74 0 3396 109 41 3 chr6 89702464 89703115 -92712127 - L1PB1 LINE L1 -361 5790 5116 627 147 23 31 chr6 89703116 89703245 -92711997 - L1MA4A LINE L1 -260 6043 5916 291 300 0 0 chr6 89703241 89703331 -92711911 - L1PB1 LINE L1 -1040 5106 5017 * 37679 90 6 8 chr6 89703335 89708313 -92706929 - L1PA6 LINE L1 0 6154 1198 2640 36 3 0 chr6 89708313 89708619 -92706623 - AluY SINE Alu -4 307 1 37679 90 6 8 chr6 89708619 89709804 -92705438 - L1PA6 LINE L1 -4956 1198 11 8104 171 15 30 chr6 89709814 89711526 -92703716 - L1PB1 LINE L1 -1121 5025 3340 2352 77 0 10 chr6 89711574 89711871 -92703371 - AluY SINE Alu -17 294 1 297 198 156 0 chr6 89711888 89711984 -92703258 + L1MD3 LINE L1 7885 7995 0 25 31 0 0 chr6 89712657 89712689 -92702553 + AT_rich Low_complexity Low_complexity 1 32 0 788 163 30 7 chr6 89712730 89712865 -92702377 + AluJb SINE Alu 163 300 -12 1945 188 8 26 chr6 89712880 89713257 -92701985 + MER47B DNA MER2_type 1 370 -48 432 37 0 0 chr6 89715742 89715796 -92699446 + (TG)n Simple_repeat Simple_repeat 2 55 0 369 0 0 0 chr6 89717997 89718038 -92697204 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1814 167 0 0 chr6 89718044 89718326 -92696916 - AluJb SINE Alu -30 282 1 1736 182 7 0 chr6 89718866 89719152 -92696090 - AluJb SINE Alu -23 289 2 412 317 109 26 chr6 89719485 89719750 -92695492 + L2 LINE L2 2291 2577 -737 367 378 105 42 chr6 89721768 89722178 -92693064 - L2 LINE L2 0 3272 2837 538 275 101 10 chr6 89722883 89723090 -92692152 + MLT1L LTR MaLR 386 611 -4 1583 167 85 0 chr6 89723310 89723580 -92691662 - AluJb SINE Alu -19 293 1 1266 297 86 36 chr6 89723881 89724447 -92690795 - L2 LINE L2 -420 2894 2295 1899 160 35 6 chr6 89724447 89724785 -92690457 - MER7A DNA MER2_type 0 346 1 1266 297 86 36 chr6 89724785 89724824 -92690418 - L2 LINE L2 -1019 2295 2259 9834 175 7 18 chr6 89725261 89728030 -92687212 - L1PA13 LINE L1 -2 6161 3415 2212 113 6 22 chr6 89728976 89729294 -92685948 - AluSq SINE Alu 0 313 1 2434 84 0 0 chr6 89729809 89730105 -92685137 + AluSq SINE Alu 1 296 -17 754 234 145 93 chr6 89730522 89731039 -92684203 + MLT1H1 LTR MaLR 1 555 0 2061 150 8 21 chr6 89731046 89731426 -92683816 + THE1C LTR MaLR 1 375 0 990 241 32 15 chr6 89731634 89731974 -92683268 - MER63B DNA MER1_type -90 346 1 723 231 139 0 chr6 89732373 89732581 -92682661 - LTR16A LTR ERVL -9 441 205 7709 24 1 0 chr6 89732598 89734196 -92681046 - L1PA3 LINE L1 -2 6153 4555 2861 23 0 0 chr6 89734196 89734547 -92680695 + L1PA3 LINE L1 4219 4569 -1577 337 259 108 30 chr6 89734549 89734715 -92680527 - LTR16A LTR ERVL -263 187 9 2122 130 7 3 chr6 89735498 89735797 -92679445 + AluSx SINE Alu 1 300 -12 1358 176 121 8 chr6 89736124 89736380 -92678862 - AluJb SINE Alu -27 285 1 358 302 35 0 chr6 89736596 89736712 -92678530 - MIR SINE MIR -40 222 103 241 353 59 22 chr6 89736916 89737052 -92678190 + MIR SINE MIR 12 152 -110 1065 183 131 62 chr6 89737059 89737463 -92677779 - MSTB1 LTR MaLR 0 432 1 707 254 88 35 chr6 89738185 89738468 -92676774 + MER45C DNA AcHobo 6 303 -650 800 204 111 74 chr6 89738561 89738777 -92676465 + MER45C DNA AcHobo 730 953 0 189 184 26 0 chr6 89739869 89739907 -92675335 + L2 LINE L2 3266 3304 -9 1837 143 49 47 chr6 89739931 89740338 -92674904 - L1MA8 LINE L1 0 6291 5884 262 239 14 0 chr6 89740936 89741007 -92674235 + MER116 DNA Mariner 2 73 -7 539 148 0 0 chr6 89741220 89741308 -92673934 - AluJb SINE Alu -176 136 49 573 239 22 0 chr6 89742371 89742509 -92672733 + MIR SINE MIR 79 219 -43 228 35 0 0 chr6 89742547 89742576 -92672666 + (T)n Simple_repeat Simple_repeat 1 29 0 531 140 75 0 chr6 89742633 89742726 -92672516 + MER58 DNA MER1_type 2318 2417 -3 25 0 0 0 chr6 89743170 89743195 -92672047 + AT_rich Low_complexity Low_complexity 1 25 0 824 153 0 0 chr6 89743198 89743316 -92671926 - FLAM_C SINE Alu -15 118 1 882 203 150 58 chr6 89744284 89744683 -92670559 + L1ME3 LINE L1 5726 6161 -1 4760 122 15 29 chr6 89744864 89746003 -92669239 - L1PA16 LINE L1 -9 6157 5057 2010 127 7 13 chr6 89746003 89746302 -92668940 - AluSq SINE Alu -16 297 1 4760 122 15 29 chr6 89746302 89746892 -92668350 - L1PA16 LINE L1 -1109 5057 4460 1942 149 0 21 chr6 89747513 89747880 -92667362 + AluSx SINE Alu 1 361 0 767 252 19 0 chr6 89747900 89748059 -92667183 - MER45A DNA AcHobo -12 166 5 187 290 226 32 chr6 89748341 89748496 -92666746 + L2 LINE L2 3128 3312 -1 198 0 0 0 chr6 89748654 89748676 -92666566 + (TA)n Simple_repeat Simple_repeat 2 23 0 1830 138 10 27 chr6 89748686 89748982 -92666260 - AluSx SINE Alu -21 291 1 2038 104 0 7 chr6 89750152 89750441 -92664801 - L1PA15 LINE L1 -13 6152 5866 213 121 0 0 chr6 89750534 89750567 -92664675 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 249 33 0 0 chr6 89750659 89750689 -92664553 + (T)n Simple_repeat Simple_repeat 1 30 0 1312 128 0 41 chr6 89750698 89750894 -92664348 - AluSx SINE Alu -124 188 1 673 308 69 12 chr6 89751294 89751541 -92663701 - MIR SINE MIR 0 262 2 2405 86 3 0 chr6 89752009 89752312 -92662930 - AluSp SINE Alu -9 304 1 1468 66 10 10 chr6 89752324 89752522 -92662720 - L1PA6 LINE L1 0 6154 5957 5181 291 74 13 chr6 89754964 89756766 -92658476 + L2 LINE L2 893 2804 -510 1056 243 135 28 chr6 89756770 89757169 -92658073 - MLT1C LTR MaLR -4 463 22 653 257 150 32 chr6 89757186 89757466 -92657776 + L2 LINE L2 2812 3124 -189 1081 294 81 11 chr6 89757497 89757868 -92657374 - MLT1G1 LTR MaLR -123 472 76 2401 49 3 0 chr6 89757991 89758278 -92656964 - AluY SINE Alu -6 305 18 1891 140 18 0 chr6 89758469 89758781 -92656461 - AluSx SINE Alu 0 317 1 836 208 30 50 chr6 89759170 89759569 -92655673 - MLT1A2 LTR MaLR 0 374 29 1192 233 146 30 chr6 89759787 89760317 -92654925 + MLT1E2 LTR MaLR 3 611 -15 2153 153 5 24 chr6 89760529 89760902 -92654340 + MER47A DNA MER2_type 1 366 0 381 159 0 0 chr6 89761560 89761629 -92653613 + Tigger5 DNA MER2_type 2199 2267 -56 390 284 55 0 chr6 89761688 89761797 -92653445 + MIR SINE MIR 53 167 -95 979 186 6 0 chr6 89762015 89762182 -92653060 + AluJb SINE Alu 132 299 -13 1442 232 87 9 chr6 89762336 89762798 -92652444 - L1ME3A LINE L1 -12 6158 5661 783 265 89 0 chr6 89762803 89763128 -92652114 - L1ME3A LINE L1 -539 5623 5270 2050 137 3 0 chr6 89763138 89763431 -92651811 + AluSx SINE Alu 1 294 -18 318 326 76 11 chr6 89763435 89763619 -92651623 - L1ME3A LINE L1 -918 5228 5033 2024 152 0 3 chr6 89763794 89764096 -92651146 - AluSx SINE Alu -11 301 1 897 266 27 27 chr6 89766327 89766583 -92648659 + MIR SINE MIR 7 262 0 206 415 0 0 chr6 89767120 89767214 -92648028 + L2 LINE L2 3178 3271 -1 572 248 29 81 chr6 89767405 89767651 -92647591 + L2 LINE L2 3081 3313 0 266 274 27 0 chr6 89767649 89767722 -92647520 - L2 LINE L2 -8 3264 3190 * 27 62 0 0 chr6 89767787 89767835 -92647407 + AT_rich Low_complexity Low_complexity 1 48 0 738 266 38 61 chr6 89768061 89768407 -92646835 + MER102b DNA MER1_type 4 341 0 207 100 0 0 chr6 89769907 89769937 -92645305 + (CA)n Simple_repeat Simple_repeat 2 31 0 259 194 0 16 chr6 89769943 89770005 -92645237 + L1ME4a LINE L1 5974 6034 -87 263 299 102 18 chr6 89770891 89771017 -92644225 + MIR3 SINE MIR 50 180 -28 2063 138 44 41 chr6 89772638 89773001 -92642241 + THE1B LTR MaLR 1 364 0 361 313 44 38 chr6 89773113 89773273 -92641969 + L2 LINE L2 2898 3058 -214 187 324 0 29 chr6 89773341 89773409 -92641833 + L3b LINE CR1 1185 1250 -333 5123 242 80 20 chr6 89773553 89773980 -92641262 + L1MC4a LINE L1 3342 3742 -2379 342 80 0 0 chr6 89773980 89774030 -92641212 + (TG)n Simple_repeat Simple_repeat 1 50 0 5123 242 80 20 chr6 89774030 89774940 -92640302 + L1MC4a LINE L1 3742 4596 -1525 1201 191 105 46 chr6 89774940 89775264 -92639978 - MER2 DNA MER2_type 0 344 2 5123 242 80 20 chr6 89775264 89775702 -92639540 + L1MC4a LINE L1 4596 5006 -1115 2060 141 13 0 chr6 89775702 89776008 -92639234 + AluSx SINE Alu 1 310 -2 5123 242 80 20 chr6 89776008 89776507 -92638735 + L1MC4a LINE L1 5006 5784 -337 1302 225 75 24 chr6 89776607 89777004 -92638238 + MER39 LTR ERV1 90 707 0 519 236 171 29 chr6 89777004 89777284 -92637958 + L1MC4a LINE L1 5779 6098 -1710 1608 195 98 18 chr6 89777297 89777686 -92637556 + L1MC4 LINE L1 6728 7147 -895 549 234 58 47 chr6 89777898 89778069 -92637173 - MER5B DNA MER1_type -3 175 3 244 250 0 16 chr6 89780922 89780986 -92634256 - L3 LINE CR1 -154 1423 1361 1880 133 87 35 chr6 89781380 89781726 -92633516 + THE1B LTR MaLR 1 364 0 185 178 22 0 chr6 89782575 89782620 -92632622 + CT-rich Low_complexity Low_complexity 2 47 0 408 309 55 76 chr6 89782659 89782853 -92632389 - HAL1 LINE L1 -1258 1249 1052 2059 128 0 42 chr6 89782853 89783165 -92632077 - AluSx SINE Alu -13 299 1 408 309 55 76 chr6 89783165 89783403 -92631839 - HAL1 LINE L1 -1455 1052 826 291 240 165 0 chr6 89783476 89783597 -92631645 - L1ME4a LINE L1 -2 6119 5979 200 194 0 0 chr6 89783599 89783635 -92631607 + (CA)n Simple_repeat Simple_repeat 1 36 0 813 358 140 21 chr6 89783677 89784610 -92630632 - L2 LINE L2 -81 3232 2184 401 285 55 41 chr6 89784624 89784702 -92630540 - L1ME LINE L1 -586 5576 5501 2521 146 36 2 chr6 89784702 89785121 -92630121 - Tigger2a DNA MER2_type -1 433 1 401 285 55 41 chr6 89785121 89785261 -92629981 - L1ME LINE L1 -661 5501 5351 269 272 39 48 chr6 89785362 89785465 -92629777 - L3 LINE CR1 -265 1312 1211 930 245 199 21 chr6 89787098 89787526 -92627716 - L1MC4a LINE L1 -1869 5939 5436 221 315 28 9 chr6 89787872 89787980 -92627262 + L2 LINE L2 3203 3312 -1 202 216 0 0 chr6 89790739 89790776 -92624466 + (TATG)n Simple_repeat Simple_repeat 3 39 0 756 174 0 0 chr6 89791704 89791819 -92623423 + FLAM_C SINE Alu 1 115 -28 201 74 0 0 chr6 89791819 89791846 -92623396 + (CAA)n Simple_repeat Simple_repeat 1 27 0 393 177 0 0 chr6 89791870 89791932 -92623310 + AluJ/FRAM SINE Alu 225 286 -16 24 0 0 0 chr6 89791932 89791956 -92623286 + AT_rich Low_complexity Low_complexity 1 24 0 311 386 66 12 chr6 89793708 89793949 -92621293 + L2 LINE L2 2625 2878 -436 21 0 0 0 chr6 89794823 89794844 -92620398 + AT_rich Low_complexity Low_complexity 1 21 0 1451 330 180 19 chr6 89795457 89795994 -92619248 - L3 LINE CR1 -7 1570 1120 1830 171 7 70 chr6 89795994 89796410 -92618832 + MLT1B LTR MaLR 1 390 0 1451 330 180 19 chr6 89796410 89797102 -92618140 - L3 LINE CR1 -457 1120 144 201 428 30 30 chr6 89798057 89798188 -92617054 + L2 LINE L2 3136 3266 -6 207 0 0 0 chr6 89798755 89798778 -92616464 + (CAA)n Simple_repeat Simple_repeat 2 24 0 730 124 54 174 chr6 89799542 89799783 -92615459 - L1MA8 LINE L1 -2 6289 6078 552 334 132 10 chr6 89800101 89800496 -92614746 - L3 LINE CR1 -234 1343 901 318 218 0 51 chr6 89800585 89800663 -92614579 - L2 LINE L2 -2 3270 3197 385 278 9 9 chr6 89801171 89801279 -92613963 + LTR67 LTR ERVL 432 539 -18 485 253 14 152 chr6 89801352 89801641 -92613601 + MIR SINE MIR 6 254 -8 4599 167 24 9 chr6 89801819 89802698 -92612544 + L1MB4 LINE L1 5288 6179 -1 607 269 94 12 chr6 89803565 89803725 -92611517 + MIR3 SINE MIR 20 192 -16 202 267 0 0 chr6 89805329 89805374 -92609868 - MIR SINE MIR 0 262 218 285 253 0 11 chr6 89805609 89805704 -92609538 - L1MA4A LINE L1 -1 6302 6209 647 167 144 15 chr6 89805709 89805841 -92609401 - MER3 DNA MER1_type -60 149 1 246 307 31 71 chr6 89805916 89806043 -92609199 + L2 LINE L2 3182 3303 -10 406 333 50 43 chr6 89806056 89806335 -92608907 - L2 LINE L2 -188 3084 2804 236 229 48 76 chr6 89806751 89806856 -92608386 - L2 LINE L2 -1017 2297 2196 310 367 104 19 chr6 89807405 89807675 -92607567 + L3 LINE CR1 1065 1357 -220 494 281 92 22 chr6 89808689 89808874 -92606368 + MIR SINE MIR 1 198 -64 243 115 58 19 chr6 89809570 89809622 -92605620 + MIR SINE MIR 102 155 -107 853 273 79 16 chr6 89810101 89810354 -92604888 - MLT1H LTR MaLR -259 290 22 198 222 12 99 chr6 89811500 89811581 -92603661 - L3 LINE CR1 -1 1576 1503 277 231 98 106 chr6 89812046 89812236 -92603006 - MIR SINE MIR -56 206 16 25 0 0 0 chr6 89812436 89812461 -92602781 + AT_rich Low_complexity Low_complexity 1 25 0 295 230 65 93 chr6 89812506 89812669 -92602573 - MIR SINE MIR -75 187 32 246 261 15 31 chr6 89813364 89813429 -92601813 + MER91 DNA MER1_type 127 190 0 970 209 66 63 chr6 89813753 89814054 -92601188 - MLT1B LTR MaLR 0 390 89 5043 189 46 28 chr6 89814351 89815794 -92599448 - L1MA10 LINE L1 -1 6333 4847 6888 67 11 2 chr6 89815794 89816866 -92598376 + L1PA8 LINE L1 5077 6166 -6 5043 189 46 28 chr6 89816866 89816972 -92598270 - L1MA10 LINE L1 -1487 4847 4744 6185 175 22 13 chr6 89816974 89819242 -92596000 - L1PA16 LINE L1 -3 6866 4582 * 13509 142 95 19 chr6 89819238 89820709 -92594533 - L1PA16 LINE L1 -4186 2663 938 348 24 0 0 chr6 89820709 89820750 -92594492 + (TG)n Simple_repeat Simple_repeat 1 41 0 13509 142 95 19 chr6 89820750 89821658 -92593584 - L1PA16 LINE L1 -5911 938 101 664 196 29 0 chr6 89821659 89821797 -92593445 - L1MA10 LINE L1 -1399 4747 4606 2182 55 0 4 chr6 89821798 89822069 -92593173 + AluY SINE Alu 1 270 -41 25357 35 5 0 chr6 89822169 89826805 -92588437 + L1PA4 LINE L1 1497 6154 -1 367 333 60 7 chr6 89827676 89827826 -92587416 - MIR SINE MIR -48 214 57 237 114 45 0 chr6 89828412 89828456 -92586786 - Alu SINE Alu -256 46 1 1052 184 129 101 chr6 89828457 89828599 -92586643 + L1MD2 LINE L1 5920 6057 -302 2119 124 7 3 chr6 89828599 89828898 -92586344 - AluSx SINE Alu -12 300 1 1052 184 129 101 chr6 89828898 89828970 -92586272 + L1MD2 LINE L1 6057 6125 -234 228 35 0 0 chr6 89828970 89828999 -92586243 + (CA)n Simple_repeat Simple_repeat 2 30 0 1052 184 129 101 chr6 89828999 89829066 -92586176 + L1MD2 LINE L1 6125 6189 -170 1739 163 10 14 chr6 89829066 89829361 -92585881 + AluJo SINE Alu 1 294 -18 1052 184 129 101 chr6 89829361 89829502 -92585740 + L1MD2 LINE L1 6189 6356 -3 4625 101 16 84 chr6 89829772 89830354 -92584888 - LTR8 LTR ERV1 0 691 168 2127 121 7 3 chr6 89830354 89830659 -92584583 - AluSp SINE Alu -7 306 1 4625 101 16 84 chr6 89830659 89830817 -92584425 - LTR8 LTR ERV1 -523 168 1 496 274 81 15 chr6 89831178 89831375 -92583867 + LTR67 LTR ERVL 329 538 -19 475 183 0 0 chr6 89831640 89831722 -92583520 - AluSp/q SINE Alu -17 296 215 5473 75 15 1 chr6 89832408 89833090 -92582152 + LTR8 LTR ERV1 1 691 0 352 157 37 93 chr6 89833347 89833455 -92581787 - MIR SINE MIR -87 175 74 216 97 0 0 chr6 89833700 89833731 -92581511 + (TG)n Simple_repeat Simple_repeat 1 31 0 27 49 0 0 chr6 89833827 89833868 -92581374 + AT_rich Low_complexity Low_complexity 1 41 0 1898 139 0 4 chr6 89834140 89834420 -92580822 + AluSq SINE Alu 3 281 -32 764 92 8 0 chr6 89834423 89834542 -92580700 + (GGAA)n Simple_repeat Simple_repeat 3 122 0 484 268 89 18 chr6 89834561 89834729 -92580513 - MLT1K LTR MaLR -42 546 367 2199 120 0 0 chr6 89835248 89835540 -92579702 - AluSx SINE Alu -20 292 1 1435 254 83 3 chr6 89835612 89835986 -92579256 + MER90 LTR ERV1 165 568 -7 373 329 108 57 chr6 89836034 89836478 -92578764 + L2 LINE L2 2587 3061 -211 322 304 59 0 chr6 89836723 89836825 -92578417 + MER20 DNA MER1_type 108 215 -4 257 247 27 0 chr6 89836855 89836928 -92578314 + (TGAA)n Simple_repeat Simple_repeat 2 76 0 2128 141 0 0 chr6 89837101 89837400 -92577842 + AluSx SINE Alu 1 299 -13 1736 102 165 62 chr6 89838532 89839061 -92576181 + MER4A LTR ERV1 1 651 -13 1306 122 0 0 chr6 89839382 89839562 -92575680 - AluSq SINE Alu -2 311 132 690 232 23 11 chr6 89839742 89839919 -92575323 + LTR37A LTR ERV1 78 256 -170 1022 174 0 12 chr6 89840009 89840350 -92574892 + AluSg/x SINE Alu 136 312 0 741 168 7 51 chr6 89840653 89840790 -92574452 - AluSg/x SINE Alu -16 294 164 1674 132 33 37 chr6 89840802 89841074 -92574168 - AluSx SINE Alu -39 273 3 579 207 48 27 chr6 89842284 89842472 -92572770 + LTR37A LTR ERV1 225 416 -10 2213 119 0 0 chr6 89842472 89842774 -92572468 - AluSg SINE Alu -8 302 1 2149 134 0 0 chr6 89842870 89843176 -92572066 - AluSx SINE Alu -4 308 3 266 0 0 29 chr6 89843178 89843213 -92572029 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2169 112 0 0 chr6 89843213 89843498 -92571744 - AluSx SINE Alu -27 285 1 1689 130 0 0 chr6 89843759 89843997 -92571245 - AluSg/x SINE Alu -2 310 73 2184 122 10 6 chr6 89844011 89844322 -92570920 - AluSx SINE Alu 0 312 1 273 264 0 0 chr6 89844351 89844442 -92570800 + (TA)n Simple_repeat Simple_repeat 1 91 0 21 0 0 0 chr6 89845716 89845737 -92569505 + AT_rich Low_complexity Low_complexity 1 21 0 2224 113 3 0 chr6 89846174 89846474 -92568768 + AluSg SINE Alu 1 301 -9 1624 125 17 8 chr6 89846714 89846954 -92568288 - AluSq SINE Alu -71 242 1 3496 151 120 19 chr6 89850228 89850870 -92564372 - MER39 LTR ERV1 0 707 1 2389 100 0 3 chr6 89851123 89851433 -92563809 + AluSg SINE Alu 1 309 -1 192 291 77 55 chr6 89851627 89851809 -92563433 + L2 LINE L2 3041 3226 -87 614 227 9 0 chr6 89852102 89852212 -92563030 + MER81 DNA DNA 4 114 0 375 250 0 0 chr6 89852329 89852401 -92562841 + L2 LINE L2 3200 3271 -1 497 156 0 73 chr6 89852436 89852532 -92562710 + AluJ/FRAM SINE Alu 217 305 -7 360 350 182 5 chr6 89852752 89852955 -92562287 + L2 LINE L2 3016 3254 -18 1681 169 6 16 chr6 89853068 89853381 -92561861 + AluJb SINE Alu 1 310 -2 398 261 63 14 chr6 89853440 89853582 -92561660 - MIR SINE MIR -49 213 65 303 28 0 0 chr6 89854042 89854078 -92561164 + (TG)n Simple_repeat Simple_repeat 2 37 0 2106 151 32 24 chr6 89854374 89854744 -92560498 - THE1C LTR MaLR 0 375 3 34026 109 14 29 chr6 89855342 89855995 -92559247 - L1PA7 LINE L1 0 6154 5493 2337 84 3 7 chr6 89855995 89856294 -92558948 - AluY SINE Alu -13 298 1 34026 109 14 29 chr6 89856294 89861880 -92553362 - L1PA7 LINE L1 -661 5493 10 444 261 133 18 chr6 89863496 89863661 -92551581 - MIR SINE MIR -6 256 73 213 313 25 0 chr6 89863700 89863780 -92551462 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 982 251 59 47 chr6 89863921 89864152 -92551090 + MER2 DNA MER2_type 2 229 -116 2228 108 0 10 chr6 89864152 89864457 -92550785 - AluSg SINE Alu -8 302 1 189 0 0 0 chr6 89864460 89864481 -92550761 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2074 122 7 0 chr6 89864486 89864774 -92550468 - AluSx SINE Alu -22 290 1 982 251 59 47 chr6 89864774 89864871 -92550371 + MER2 DNA MER2_type 233 344 -1 6384 80 2 6 chr6 89865537 89866353 -92548889 + L1PA8 LINE L1 5360 6172 0 2283 112 0 3 chr6 89866655 89866960 -92548282 - AluSq SINE Alu -9 304 1 2261 80 0 3 chr6 89867591 89867878 -92547364 + AluSg SINE Alu 11 296 -14 2836 77 14 0 chr6 89867885 89868235 -92547007 - THE1A LTR MaLR 0 355 1 185 224 207 0 chr6 89868239 89868297 -92546945 - MIR SINE MIR -18 244 175 1018 259 99 30 chr6 89868367 89868393 -92546849 + MLT1H1 LTR MaLR 1 24 -566 2249 90 0 23 chr6 89868393 89868693 -92546549 + AluY SINE Alu 1 293 -18 1018 259 99 30 chr6 89868693 89869106 -92546136 + MLT1H1 LTR MaLR 24 531 -59 1816 171 0 0 chr6 89869106 89869393 -92545849 - AluSx SINE Alu -25 287 1 1018 259 99 30 chr6 89869393 89869458 -92545784 + MLT1H1 LTR MaLR 531 590 0 24 0 0 0 chr6 89869542 89869566 -92545676 + AT_rich Low_complexity Low_complexity 1 24 0 247 255 0 0 chr6 89869723 89869774 -92545468 - L2 LINE L2 -2 3270 3220 2200 108 0 3 chr6 89869955 89870243 -92544999 + AluSq SINE Alu 1 287 -26 213 39 0 0 chr6 89870253 89870279 -92544963 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1993 113 0 28 chr6 89870637 89870928 -92544314 + AluSg SINE Alu 1 283 -27 180 0 0 0 chr6 89870942 89870962 -92544280 + (CAT)n Simple_repeat Simple_repeat 2 21 0 756 313 63 61 chr6 89871417 89871861 -92543381 + MLT1K LTR MaLR 140 584 -4 445 352 52 20 chr6 89871962 89872116 -92543126 + MIR SINE MIR 2 169 -93 2264 110 0 0 chr6 89872116 89872416 -92542826 - AluSq SINE Alu -13 300 1 445 352 52 20 chr6 89872416 89872511 -92542731 + MIR SINE MIR 169 259 -3 1089 158 48 113 chr6 89872967 89873007 -92542235 + THE1C LTR MaLR 1 42 -333 2083 138 0 3 chr6 89873007 89873319 -92541923 - AluY SINE Alu 0 311 1 1089 158 48 113 chr6 89873319 89873613 -92541629 + THE1C LTR MaLR 42 313 -62 1960 118 0 28 chr6 89874123 89874433 -92540809 + AluSg SINE Alu 1 302 0 756 313 63 61 chr6 89874903 89875347 -92539895 + MLT1K LTR MaLR 140 584 -4 470 352 52 20 chr6 89875448 89875602 -92539640 + MIR SINE MIR 2 169 -93 2255 110 0 0 chr6 89875602 89875901 -92539341 - AluSq SINE Alu -14 299 1 470 352 52 20 chr6 89875901 89875996 -92539246 + MIR SINE MIR 169 259 -3 1755 140 39 72 chr6 89876452 89876486 -92538756 + THE1C LTR MaLR 1 35 -340 2565 56 0 3 chr6 89876486 89876791 -92538451 - AluY SINE Alu -7 304 1 1755 140 39 72 chr6 89876791 89877142 -92538100 + THE1C LTR MaLR 35 373 -2 1292 213 12 4 chr6 89877403 89877656 -92537586 - MLT1A1 LTR MaLR -110 255 1 2313 122 25 5 chr6 89877720 89878088 -92537154 - THE1C LTR MaLR 0 375 1 326 161 0 0 chr6 89878197 89878253 -92536989 - MSTA LTR MaLR -372 56 1 2301 103 3 0 chr6 89878271 89878571 -92536671 - AluSq SINE Alu -12 301 1 4695 55 2 2 chr6 89878628 89879215 -92536027 - LTR14C LTR ERVK 0 587 1 192 188 78 47 chr6 89879227 89879291 -92535951 + MIR SINE MIR 186 251 -11 1420 179 19 63 chr6 89879305 89879807 -92535435 - AluJb SINE Alu 0 312 1 2037 193 68 0 chr6 89879889 89880288 -92534954 - MSTB LTR MaLR 0 426 1 381 222 0 0 chr6 89880288 89880387 -92534855 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 563 242 42 0 chr6 89880742 89880862 -92534380 - MIR SINE MIR -107 155 31 465 232 221 0 chr6 89881062 89881243 -92533999 - L2 LINE L2 -12 3301 3081 11329 44 5 0 chr6 89881829 89883998 -92531244 + L1PA3 LINE L1 3976 6151 -4 2638 89 5 3 chr6 89884013 89884394 -92530848 + L1PA5 LINE L1 5770 6151 -3 294 206 33 11 chr6 89884982 89885074 -92530168 + (TA)n Simple_repeat Simple_repeat 1 94 0 1138 153 100 4 chr6 89885074 89885315 -92529927 - L1MA6 LINE L1 -6 6294 6031 1099 201 56 8 chr6 89885317 89885551 -92529691 - MSTB1 LTR MaLR 0 432 188 6858 124 27 8 chr6 89885559 89885722 -92529520 - L1MA3 LINE L1 0 6305 6147 198 0 0 0 chr6 89885722 89885744 -92529498 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2101 121 7 0 chr6 89885744 89886026 -92529216 - AluSx SINE Alu -28 284 1 6858 124 27 8 chr6 89886026 89887397 -92527845 - L1MA3 LINE L1 -157 6148 4732 1059 97 0 0 chr6 89887419 89887691 -92527551 + (TA)n Simple_repeat Simple_repeat 1 272 0 308 219 0 0 chr6 89888135 89888199 -92527043 - L1MA3 LINE L1 -2754 3392 3329 * 12600 154 37 6 chr6 89888196 89891063 -92524179 - L1 LINE L1 -1420 6145 3093 2110 123 0 0 chr6 89891063 89891356 -92523886 - AluSx SINE Alu -7 305 13 12600 154 37 6 chr6 89891356 89892896 -92522346 - L1 LINE L1 -4472 3093 1602 1424 140 25 0 chr6 89892962 89893198 -92522044 - L1M2 LINE L1 -638 5653 5412 * 15774 190 62 13 chr6 89893197 89897196 -92518046 + L1PB1 LINE L1 1 3802 -3065 1985 146 0 0 chr6 89897196 89897508 -92517734 - AluSx SINE Alu 0 312 1 15774 190 62 13 chr6 89897508 89898364 -92516878 + L1PB1 LINE L1 3802 4615 -2252 189 0 0 0 chr6 89898364 89898385 -92516857 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 15774 190 62 13 chr6 89898385 89899995 -92515247 + L1PB1 LINE L1 4615 6867 0 443 138 25 0 chr6 89900045 89900125 -92515117 - L1M2 LINE L1 -867 5424 5343 234 191 0 0 chr6 89900125 89900172 -92515070 + (TA)n Simple_repeat Simple_repeat 1 47 0 270 338 14 56 chr6 89900172 89900314 -92514928 - MER5A DNA MER1_type -53 136 1 579 271 107 11 chr6 89900405 89900582 -92514660 - MIR3 SINE MIR 0 208 15 187 350 12 0 chr6 89901451 89901531 -92513711 + MIR SINE MIR 118 198 -64 189 242 81 16 chr6 89901894 89901956 -92513286 + MER5A DNA MER1_type 121 186 -3 389 201 152 67 chr6 89901976 89902140 -92513102 - MER5B DNA MER1_type 0 178 1 195 81 27 27 chr6 89902289 89902326 -92512916 - L2 LINE L2 -4 3309 3273 2110 149 0 0 chr6 89902400 89902702 -92512540 + AluSx SINE Alu 1 302 -10 532 250 92 26 chr6 89903417 89903645 -92511597 - HAL1 LINE L1 -7 2500 2258 274 247 88 82 chr6 89903724 89903906 -92511336 - L2 LINE L2 -50 3263 3081 2415 303 116 72 chr6 89903907 89904981 -92510261 - HAL1 LINE L1 -290 2217 1193 1960 125 28 3 chr6 89904981 89905270 -92509972 + AluSx SINE Alu 1 296 -16 2415 303 116 72 chr6 89905270 89905485 -92509757 - HAL1 LINE L1 -1314 1193 989 1858 100 0 120 chr6 89905485 89905826 -92509416 - AluSx SINE Alu 0 302 3 2415 303 116 72 chr6 89905826 89906207 -92509035 - HAL1 LINE L1 -1518 989 627 802 166 53 30 chr6 89906207 89906376 -92508866 - MER69A DNA AcHobo -3 174 2 2415 303 116 72 chr6 89906376 89906825 -92508417 - HAL1 LINE L1 -1880 627 1 5298 137 37 6 chr6 89906985 89907941 -92507301 - L1PB3 LINE L1 -1 6153 5175 463 243 43 0 chr6 89908268 89908408 -92506834 + MER103 DNA DNA 8 153 -13 1801 200 50 3 chr6 89909668 89910027 -92505215 + MLT1C LTR MaLR 1 376 -91 4233 121 68 5 chr6 89910027 89910694 -92504548 + MER50 LTR ERV1 1 709 -25 547 175 0 10 chr6 89910696 89910793 -92504449 + MLT1C LTR MaLR 372 467 0 571 260 45 18 chr6 89910793 89911016 -92504226 - L1MC4a LINE L1 -1951 5857 5629 322 135 29 96 chr6 89912681 89912728 -92502514 - L1MB3 LINE L1 0 6183 6145 2215 103 0 13 chr6 89912728 89913039 -92502203 - AluSc SINE Alu -2 307 1 322 135 29 96 chr6 89913039 89913095 -92502147 - L1MB3 LINE L1 -38 6145 6087 3641 140 5 2 chr6 89913105 89913685 -92501557 - L1MA4 LINE L1 -279 6021 5440 409 286 146 18 chr6 89914380 89914551 -92500691 - MIR SINE MIR -2 260 68 2143 123 7 0 chr6 89915158 89915459 -92499783 - AluSq SINE Alu -6 307 5 789 300 24 36 chr6 89915697 89915947 -92499295 - MIR SINE MIR -8 254 8 515 311 7 0 chr6 89916574 89916709 -92498533 + MIR3 SINE MIR 34 169 -39 231 167 157 29 chr6 89916845 89916947 -92498295 - Charlie7 DNA MER1_type -80 2532 2418 * 1402 225 59 8 chr6 89916942 89917316 -92497926 - Charlie7 DNA MER1_type -1892 720 328 243 269 0 0 chr6 89917325 89917377 -92497865 - LTR16C LTR ERVL -10 481 430 585 136 0 18 chr6 89917406 89917516 -92497726 - L1PA13 LINE L1 -1 6162 6055 477 110 183 0 chr6 89917518 89917600 -92497642 + L1P4 LINE L1 5695 5791 -375 362 330 82 22 chr6 89917612 89917882 -92497360 - LTR16C LTR ERVL -123 368 83 377 229 41 0 chr6 89918123 89918245 -92496997 - Charlie7 DNA MER1_type -2465 147 21 2137 133 0 0 chr6 89919192 89919492 -92495750 - AluSx SINE Alu -12 300 1 2228 112 6 10 chr6 89919654 89919967 -92495275 - AluSx SINE Alu 0 312 1 1716 224 8 19 chr6 89920609 89920984 -92494258 - MER88 LTR ERVL -15 449 79 782 109 42 0 chr6 89921185 89921304 -92493938 - MSTA LTR MaLR -304 124 1 8695 149 7 37 chr6 89921304 89922826 -92492416 - MSTA-int LTR MaLR 0 1580 104 809 141 141 0 chr6 89922826 89922982 -92492260 - MSTA LTR MaLR -250 178 1 1396 198 9 60 chr6 89923737 89924055 -92491187 - AluJo SINE Alu -10 302 1 1259 126 70 0 chr6 89924095 89924309 -92490933 + MER30 DNA MER1_type 2 230 0 3096 158 12 12 chr6 89924431 89925015 -92490227 - L1MB8 LINE L1 -2 6176 5593 5469 220 38 28 chr6 89925017 89926556 -92488686 - L1MEc LINE L1 -2275 4682 3159 2110 132 7 13 chr6 89926556 89926866 -92488376 - AluSx SINE Alu -4 308 1 2220 117 0 0 chr6 89926868 89927168 -92488074 - AluSg SINE Alu 0 310 11 5469 220 38 28 chr6 89927168 89927695 -92487547 - L1MEc LINE L1 -3798 3159 2611 1601 161 32 47 chr6 89927746 89928087 -92487155 + MER7A DNA MER2_type 1 334 -12 39 50 0 0 chr6 89928343 89928403 -92486839 + AT_rich Low_complexity Low_complexity 1 60 0 582 184 81 0 chr6 89928403 89928539 -92486703 - L1MEc LINE L1 -5863 996 850 1395 252 34 10 chr6 89928548 89929035 -92486207 - L1MEc LINE L1 -6050 809 251 2188 117 0 0 chr6 89929524 89929823 -92485419 - AluSq SINE Alu -14 299 1 363 335 88 21 chr6 89930021 89930260 -92484982 - L1M4 LINE L1 -2214 3932 3678 301 331 29 15 chr6 89930705 89930841 -92484401 - L1M4 LINE L1 -2489 3657 3520 1731 152 62 4 chr6 89931293 89931569 -92483673 + AluJb SINE Alu 1 292 -20 325 331 129 0 chr6 89931626 89931789 -92483453 - MIR SINE MIR -77 185 2 2091 129 3 7 chr6 89931808 89932111 -92483131 - AluSx SINE Alu -10 302 1 602 249 206 32 chr6 89932176 89932822 -92482420 - L1M4 LINE L1 -3261 2885 2128 25 0 0 0 chr6 89932879 89932904 -92482338 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 89933791 89933814 -92481428 + AT_rich Low_complexity Low_complexity 1 23 0 326 280 147 24 chr6 89933942 89934138 -92481104 + L1ME1 LINE L1 5097 5322 -824 1126 159 0 6 chr6 89934138 89934314 -92480928 + FAM SINE Alu 1 175 0 326 280 147 24 chr6 89934314 89934328 -92480914 + L1ME1 LINE L1 5322 5333 -813 879 252 127 29 chr6 89934366 89934751 -92480491 + L1ME1 LINE L1 5318 5740 -2068 1049 205 33 63 chr6 89935080 89935446 -92479796 + L1ME1 LINE L1 5767 6121 -45 25 0 0 0 chr6 89935554 89935579 -92479663 + AT_rich Low_complexity Low_complexity 1 25 0 331 369 0 25 chr6 89935638 89935760 -92479482 + L2 LINE L2 3152 3270 -2 258 264 90 7 chr6 89937311 89937455 -92477787 - MER20B DNA MER1_type -113 670 515 21 0 0 0 chr6 89937510 89937531 -92477711 + AT_rich Low_complexity Low_complexity 1 21 0 680 218 177 4 chr6 89937545 89937788 -92477454 - MER20B DNA MER1_type -274 509 225 412 313 110 62 chr6 89938113 89938303 -92476939 + L2 LINE L2 2575 2783 -531 2352 110 0 0 chr6 89938303 89938612 -92476630 - AluSq SINE Alu -4 309 1 412 313 110 62 chr6 89938612 89938693 -92476549 + L2 LINE L2 2783 2859 -455 1108 204 94 19 chr6 89938803 89939122 -92476120 + MER2 DNA MER2_type 2 344 0 387 339 24 16 chr6 89939225 89939352 -92475890 + L2 LINE L2 3142 3269 -3 1231 153 5 0 chr6 89939407 89939616 -92475626 + MER2 DNA MER2_type 1 210 -135 268 325 92 24 chr6 89939855 89940008 -92475234 + MIR SINE MIR 1 154 -54 1886 162 0 3 chr6 89940176 89940473 -92474769 - AluSx SINE Alu -16 296 1 618 181 0 42 chr6 89940473 89940617 -92474625 + MER2 DNA MER2_type 202 339 -6 373 244 100 80 chr6 89941570 89941820 -92473422 + L1MC4a LINE L1 5737 5993 -128 376 172 154 53 chr6 89941895 89942064 -92473178 - MER53 DNA DNA -3 186 1 425 326 119 10 chr6 89942485 89942678 -92472564 + MIR SINE MIR 35 248 -14 212 188 21 21 chr6 89942709 89942757 -92472485 + (CAA)n Simple_repeat Simple_repeat 3 50 0 406 179 19 38 chr6 89942935 89943041 -92472201 - L1ME1 LINE L1 -18 6148 6045 329 257 196 75 chr6 89945304 89945518 -92469724 - L1M2 LINE L1 -5838 1011 772 21 0 0 0 chr6 89945664 89945685 -92469557 + GC_rich Low_complexity Low_complexity 1 21 0 222 200 0 0 chr6 89945734 89945779 -92469463 + CT-rich Low_complexity Low_complexity 2 46 0 369 244 97 111 chr6 89945803 89946164 -92469078 + L1M2 LINE L1 895 1250 -5599 29 28 0 0 chr6 89948076 89948112 -92467130 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr6 89950970 89951008 -92464234 + AT_rich Low_complexity Low_complexity 1 38 0 275 312 38 97 chr6 89951033 89951219 -92464023 - MIR3 SINE MIR -21 187 13 2359 113 0 0 chr6 89952305 89952614 -92462628 - AluSx SINE Alu -3 309 1 231 336 9 0 chr6 89953133 89953249 -92461993 - L1ME LINE L1 -396 5725 5609 318 26 0 0 chr6 89953511 89953550 -92461692 + (TG)n Simple_repeat Simple_repeat 1 39 0 333 277 43 0 chr6 89953924 89954018 -92461224 - MIR SINE MIR -113 149 52 185 396 92 17 chr6 89954181 89954421 -92460821 - L2 LINE L2 -191 3081 2824 652 223 57 19 chr6 89954540 89954876 -92460366 - LTR52 LTR ERVL -19 402 1 6750 184 26 21 chr6 89954876 89956064 -92459178 - LTR52-int LTR ERVL 0 3556 2376 2229 79 122 29 chr6 89956064 89956286 -92458956 - THE1C LTR MaLR 0 375 175 1507 134 0 0 chr6 89956286 89956487 -92458755 + AluSg/x SINE Alu 83 283 -27 189 0 0 0 chr6 89956487 89956508 -92458734 + (CCAA)n Simple_repeat Simple_repeat 2 22 0 2229 79 122 29 chr6 89956508 89956627 -92458615 - THE1C LTR MaLR -199 176 1 9935 100 48 40 chr6 89956627 89958195 -92457047 - THE1C-int LTR MaLR 0 1580 1 2794 85 3 11 chr6 89958195 89958573 -92456669 - THE1C LTR MaLR 0 375 1 6750 184 26 21 chr6 89958573 89958701 -92456541 - LTR52-int LTR ERVL -1179 2377 2231 2887 208 43 8 chr6 89958735 89959390 -92455852 - LTR52-int LTR ERVL -1419 2137 1460 1240 157 4 41 chr6 89959388 89959497 -92455745 - LTR52-int LTR ERVL -2034 1522 1410 * 2068 78 0 0 chr6 89959497 89959753 -92455489 + AluY SINE Alu 38 293 -18 1240 157 4 41 chr6 89959753 89959885 -92455357 - LTR52-int LTR ERVL -2146 1410 1290 370 167 0 14 chr6 89959895 89959967 -92455275 - LTR52-int LTR ERVL -3466 90 20 796 220 85 17 chr6 89960034 89960270 -92454972 - LTR52 LTR ERVL -36 385 134 180 400 17 43 chr6 89962437 89962552 -92452690 - L2 LINE L2 -161 3111 3000 476 237 22 48 chr6 89962727 89962809 -92452433 + MLT1L LTR MaLR 243 326 -289 2059 125 17 0 chr6 89962809 89963096 -92452146 - AluSq SINE Alu -20 293 2 476 237 22 48 chr6 89963096 89963347 -92451895 + MLT1L LTR MaLR 326 613 -2 479 212 164 19 chr6 89964920 89965075 -92450167 - MER5A DNA MER1_type 0 189 4 225 0 0 0 chr6 89967406 89967431 -92447811 + (TAA)n Simple_repeat Simple_repeat 2 26 0 201 154 0 0 chr6 89967676 89967715 -92447527 + (TG)n Simple_repeat Simple_repeat 2 40 0 2159 101 28 0 chr6 89968881 89969167 -92446075 + AluSg SINE Alu 13 306 -4 215 299 159 47 chr6 89969192 89969299 -92445943 + L2 LINE L2 3154 3272 0 358 262 257 19 chr6 89969335 89969545 -92445697 - MIR SINE MIR 0 262 3 320 280 51 8 chr6 89969675 89969793 -92445449 - MER5A DNA MER1_type -7 182 60 2059 115 23 7 chr6 89969793 89970098 -92445144 - AluSg SINE Alu 0 310 1 469 212 10 17 chr6 89970178 89970401 -92444841 + MER112 DNA MER1_type 1 260 0 221 255 0 0 chr6 89971155 89971206 -92444036 + T-rich Low_complexity Low_complexity 4 54 0 269 352 239 16 chr6 89971215 89971462 -92443780 - L2 LINE L2 -8 3264 2963 538 286 99 29 chr6 89971473 89971746 -92443496 - LTR16C LTR ERVL 0 491 200 24 0 0 0 chr6 89972924 89972948 -92442294 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 89973222 89973243 -92441999 + AT_rich Low_complexity Low_complexity 1 21 0 1487 184 157 0 chr6 89973482 89973846 -92441396 + MER63B DNA MER1_type 15 435 -1 404 327 144 5 chr6 89973910 89974118 -92441124 - MIR SINE MIR -6 256 20 198 103 0 0 chr6 89975055 89975084 -92440158 + (TA)n Simple_repeat Simple_repeat 2 30 0 307 283 11 11 chr6 89975087 89975179 -92440063 + L1MC4 LINE L1 6614 6705 -1337 3123 144 33 20 chr6 89976218 89976761 -92438481 - MER44D DNA MER2_type 0 605 1 448 223 8 50 chr6 89977262 89977383 -92437859 + MIR SINE MIR 22 137 -125 507 192 58 0 chr6 89977383 89977503 -92437739 - L1MC1 LINE L1 -253 6080 5954 2495 158 19 0 chr6 89977597 89978027 -92437215 - MSTB2 LTR MaLR -19 438 1 776 270 52 5 chr6 89978045 89978256 -92436986 - MIR SINE MIR -8 254 34 455 263 72 10 chr6 89978460 89978654 -92436588 - LTR33A LTR ERVL -16 507 302 255 306 40 8 chr6 89978903 89979027 -92436215 - LTR33A LTR ERVL -331 192 65 490 265 62 52 chr6 89979172 89979383 -92435859 - LTR67 LTR ERVL -5 552 340 403 309 148 6 chr6 89979432 89979594 -92435648 - LTR67 LTR ERVL -302 255 71 637 282 93 5 chr6 89979677 89979893 -92435349 - MIR SINE MIR -27 235 1 782 304 153 33 chr6 89980238 89980965 -92434277 - L2 LINE L2 -1208 2106 1293 21 0 0 0 chr6 89981785 89981806 -92433436 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 89981861 89981885 -92433357 + AT_rich Low_complexity Low_complexity 1 24 0 218 265 0 0 chr6 89982653 89982702 -92432540 + (CA)n Simple_repeat Simple_repeat 1 49 0 616 259 218 30 chr6 89982819 89983190 -92432052 - MLT1J1 LTR MaLR -5 441 1 325 317 84 0 chr6 89983639 89983781 -92431461 + MIR SINE MIR 47 200 -62 209 374 0 9 chr6 89984018 89984125 -92431117 + CT-rich Low_complexity Low_complexity 2 107 0 410 298 73 11 chr6 89984324 89984599 -92430643 + L1ME3 LINE L1 5606 5897 -224 29 28 0 0 chr6 89985615 89985651 -92429591 + AT_rich Low_complexity Low_complexity 1 36 0 254 278 0 0 chr6 89986179 89986233 -92429009 - MER5A DNA MER1_type 0 189 136 317 198 198 0 chr6 89986237 89986333 -92428909 + L1ME3 LINE L1 5928 6042 -120 541 196 19 37 chr6 89987689 89987796 -92427446 - L2 LINE L2 -2 3311 3207 2137 127 7 7 chr6 89987886 89988194 -92427048 - AluSx SINE Alu -4 308 1 2280 144 5 3 chr6 89988228 89988616 -92426626 - L1M3 LINE L1 -352 5819 5431 1026 144 0 0 chr6 89988696 89988842 -92426400 - FRAM SINE Alu -30 146 1 641 177 109 7 chr6 89989560 89989707 -92425535 - MER3 DNA MER1_type -47 162 1 363 300 29 37 chr6 89990288 89990531 -92424711 - HAL1 LINE L1 -21 2486 2246 262 206 18 149 chr6 89990528 89990756 -92424486 - HAL1 LINE L1 -1492 1015 818 * 335 311 135 55 chr6 89990855 89991167 -92424075 - HAL1 LINE L1 -2021 486 150 1679 188 24 3 chr6 89991251 89991543 -92423699 - AluJo SINE Alu -14 298 1 648 308 62 9 chr6 89991738 89991949 -92423293 + MIR SINE MIR 25 246 -16 534 299 29 95 chr6 89992026 89992300 -92422942 + L2 LINE L2 3017 3272 0 349 250 33 11 chr6 89993143 89993235 -92422007 - MIR3 SINE MIR -28 180 87 297 137 8 2 chr6 89993283 89993536 -92421706 + AluSx SINE Alu 1 302 0 2303 101 0 10 chr6 89994204 89994502 -92420740 - AluSx SINE Alu -17 295 1 225 231 74 37 chr6 89995049 89995157 -92420085 - MLT1L LTR MaLR 0 615 504 191 219 0 0 chr6 89996129 89996161 -92419081 + MIR SINE MIR 93 124 -84 210 208 0 0 chr6 89997651 89997699 -92417543 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 210 229 0 21 chr6 89997708 89997756 -92417486 + (CA)n Simple_repeat Simple_repeat 2 48 0 243 0 0 0 chr6 89997774 89997801 -92417441 + (TG)n Simple_repeat Simple_repeat 2 28 0 1139 180 71 39 chr6 89998036 89998073 -92417169 - MLT2D LTR ERVL -2 412 378 453 19 0 0 chr6 89998073 89998127 -92417115 + (TG)n Simple_repeat Simple_repeat 1 54 0 1139 180 71 39 chr6 89998127 89998400 -92416842 - MLT2D LTR ERVL -36 378 92 530 335 48 5 chr6 89998504 89998713 -92416529 + MIR SINE MIR 33 250 -12 215 302 31 21 chr6 89998761 89998857 -92416385 + L2 LINE L2 2550 2646 -668 247 328 42 8 chr6 90001707 90001826 -92413416 + L2 LINE L2 1838 1960 -1354 256 309 163 52 chr6 90001835 90002068 -92413174 + L2 LINE L2 2148 2406 -908 192 341 37 13 chr6 90002471 90002592 -92412650 - MIR SINE MIR -99 109 2 2203 141 5 35 chr6 90003029 90003404 -92411838 + MLT1A1 LTR MaLR 1 364 -1 1689 128 98 0 chr6 90004146 90004420 -92410822 + AluSx SINE Alu 1 301 -11 250 210 148 0 chr6 90004819 90004900 -92410342 + MER91C DNA MER1_type 5 97 -43 504 233 29 52 chr6 90004989 90005161 -92410081 + MIR SINE MIR 79 246 -16 204 194 28 0 chr6 90005686 90005722 -92409520 - L2 LINE L2 -8 3264 3228 433 104 0 0 chr6 90008175 90008242 -92407000 + MER41A LTR ERV1 400 466 -88 1693 208 27 36 chr6 90008255 90008693 -92406549 + MLT1C LTR MaLR 34 467 0 635 259 102 70 chr6 90010090 90010461 -92404781 + MLT1L LTR MaLR 181 563 -52 630 256 159 48 chr6 90010621 90011075 -92404167 + MLT1K LTR MaLR 85 588 0 313 291 101 14 chr6 90011147 90011295 -92403947 - MIR SINE MIR -81 181 21 256 349 122 72 chr6 90011497 90011832 -92403410 + L2 LINE L2 2918 3269 -3 209 350 20 40 chr6 90013657 90013757 -92401485 + MIR SINE MIR 35 132 -76 1836 172 68 36 chr6 90014276 90014719 -92400523 - LTR2B LTR ERV1 0 490 34 27 49 0 0 chr6 90015182 90015223 -92400019 + AT_rich Low_complexity Low_complexity 1 41 0 234 0 0 0 chr6 90015710 90015736 -92399506 + (TG)n Simple_repeat Simple_repeat 1 26 0 402 218 0 0 chr6 90015981 90016059 -92399183 + MER94 DNA DNA 42 119 -15 1849 99 39 42 chr6 90016110 90016421 -92398821 + AluSx SINE Alu 1 310 0 2728 111 36 5 chr6 90017093 90017508 -92397734 - MSTA LTR MaLR 0 428 1 198 306 198 0 chr6 90017642 90017763 -92397479 - MIR SINE MIR -70 192 48 2077 108 14 0 chr6 90017832 90018110 -92397132 + AluSx SINE Alu 1 282 -30 1431 176 33 0 chr6 90018552 90018825 -92396417 + MLT2D LTR ERVL 1 282 -132 2837 3 0 0 chr6 90019195 90019500 -92395742 + AluYa5 SINE Alu 1 305 -6 22 0 0 0 chr6 90020461 90020483 -92394759 + AT_rich Low_complexity Low_complexity 1 22 0 33 66 0 0 chr6 90020549 90020610 -92394632 + AT_rich Low_complexity Low_complexity 1 61 0 298 269 126 25 chr6 90020688 90020807 -92394435 + MIR SINE MIR 9 139 -123 7523 210 151 21 chr6 90020878 90021014 -92394228 - L1PA16 LINE L1 -2 6867 6750 1911 173 0 0 chr6 90021014 90021315 -92393927 - AluJb SINE Alu -11 301 1 7523 210 151 21 chr6 90021315 90021870 -92393372 - L1PA16 LINE L1 -119 6750 6268 2080 50 4 8 chr6 90021870 90022130 -92393112 - AluY SINE Alu -18 293 35 7523 210 151 21 chr6 90022130 90024009 -92391233 - L1PA16 LINE L1 -601 6268 4633 2383 83 0 32 chr6 90024009 90024321 -92390921 - AluY SINE Alu -9 302 1 7523 210 151 21 chr6 90024321 90025726 -92389516 - L1PA16 LINE L1 -2236 4633 2363 6411 177 4 19 chr6 90025718 90026855 -92388387 - L1PA16 LINE L1 -5711 1138 18 * 304 203 58 0 chr6 90026870 90026939 -92388303 + MIR SINE MIR 184 256 -6 664 177 23 31 chr6 90026983 90027113 -92388129 + L2 LINE L2 3185 3313 0 293 302 38 0 chr6 90027290 90027396 -92387846 + L1ME4a LINE L1 5506 5615 -506 1040 202 105 16 chr6 90027440 90027697 -92387545 + AluJo SINE Alu 26 305 -7 269 279 146 16 chr6 90027701 90028085 -92387157 + L1ME4a LINE L1 5667 6100 -21 1996 151 0 13 chr6 90028086 90028397 -92386845 - AluJb SINE Alu -3 309 3 3074 147 6 10 chr6 90029001 90029498 -92385744 + LOR1a LTR ERV1 1 495 -2 9358 120 31 24 chr6 90029500 90030827 -92384415 + LOR1a-int LTR ERV1 1 1343 -6777 2244 117 0 3 chr6 90030827 90031127 -92384115 + AluSx SINE Alu 1 299 -13 9358 120 31 24 chr6 90031127 90031430 -92383812 + LOR1a-int LTR ERV1 1343 1642 -6478 * 25055 93 25 24 chr6 90031428 90032851 -92382391 + LOR1a-int LTR ERV1 2008 3427 -4693 2232 106 0 0 chr6 90032851 90033143 -92382099 - AluSc SINE Alu -17 292 1 25055 93 25 24 chr6 90033143 90035361 -92379881 + LOR1a-int LTR ERV1 3427 5660 -2460 2077 125 3 41 chr6 90035361 90035681 -92379561 - AluSx SINE Alu -4 308 1 25055 93 25 24 chr6 90035681 90036087 -92379155 + LOR1a-int LTR ERV1 5660 6064 -2056 478 103 0 69 chr6 90036096 90036183 -92379059 + LOR1a-int LTR ERV1 8040 8120 0 3198 139 2 4 chr6 90036183 90036681 -92378561 + LOR1a LTR ERV1 1 497 0 516 238 7 7 chr6 90036860 90037011 -92378231 - L1M4 LINE L1 -1896 4250 4100 8919 72 2 11 chr6 90037013 90038250 -92376992 + L1P LINE L1 2 1226 -4920 17999 44 61 3 chr6 90038350 90040780 -92374462 - L1P LINE L1 -3574 2572 1 303 330 33 0 chr6 90040781 90040872 -92374370 + MIR SINE MIR 121 214 -48 27 96 0 0 chr6 90040988 90041071 -92374171 + AT_rich Low_complexity Low_complexity 1 83 0 257 262 24 24 chr6 90041108 90041192 -92374050 - MIR SINE MIR -97 165 82 1167 186 43 8 chr6 90044236 90044494 -92370748 - MER63D DNA MER1_type -145 916 650 729 247 35 0 chr6 90044518 90044688 -92370554 + MER58A DNA MER1_type 38 213 -11 833 192 88 35 chr6 90044700 90044960 -92370282 - MER63D DNA MER1_type -406 655 382 1149 118 0 82 chr6 90044975 90045170 -92370072 + AluJb SINE Alu 121 299 -13 3658 128 34 44 chr6 90045170 90045838 -92369404 + L1MB2 LINE L1 5476 6138 -33 2207 111 0 7 chr6 90045838 90046136 -92369106 - AluSg SINE Alu -14 296 1 3658 128 34 44 chr6 90046136 90046169 -92369073 + L1MB2 LINE L1 6138 6170 -1 664 130 65 0 chr6 90046210 90046333 -92368909 - MER63D DNA MER1_type -812 249 119 28285 38 4 0 chr6 90046433 90050869 -92364373 + L1PA4 LINE L1 1697 6152 -3 293 275 59 98 chr6 90050885 90051172 -92364070 - L1M4 LINE L1 -2066 4080 3805 705 277 31 10 chr6 90051175 90051464 -92363778 - L1M4 LINE L1 -2436 3710 3416 441 258 25 87 chr6 90051552 90051827 -92363415 - L1MC4a LINE L1 -1500 6308 6051 1955 246 64 55 chr6 90051829 90052399 -92362843 - L1MC4a LINE L1 -748 5398 5354 2133 182 52 12 chr6 90052399 90052805 -92362437 - MSTB LTR MaLR -4 422 1 1955 246 64 55 chr6 90052805 90053408 -92361834 - L1MC4a LINE L1 -792 5354 4758 2119 119 19 13 chr6 90053427 90053738 -92361504 - AluSq SINE Alu 0 313 1 954 248 9 9 chr6 90054087 90054313 -92360929 - L1MC/D LINE L1 -2141 5667 5442 18178 116 16 32 chr6 90055872 90059602 -92355640 - L1P3 LINE L1 -2369 4092 346 255 275 12 25 chr6 90059625 90059705 -92355537 - MER5B DNA MER1_type -99 79 1 23 54 0 0 chr6 90061053 90061090 -92354152 + AT_rich Low_complexity Low_complexity 1 37 0 343 300 0 0 chr6 90061667 90061747 -92353495 - MIR SINE MIR -60 148 69 233 269 83 37 chr6 90062182 90062290 -92352952 + L1MC/D LINE L1 5645 5757 -2051 234 30 0 30 chr6 90062299 90062332 -92352910 - MLT2B1 LTR ERVL 0 515 484 180 0 0 0 chr6 90062346 90062366 -92352876 + (CA)n Simple_repeat Simple_repeat 2 21 0 6981 122 67 15 chr6 90062367 90063280 -92351962 - HSMAR2 DNA Mariner -10 1292 297 5362 132 12 2 chr6 90063280 90064589 -92350653 - L1PA15 LINE L1 -2 6163 4821 6981 122 67 15 chr6 90064589 90064900 -92350342 - HSMAR2 DNA Mariner -1005 297 4 414 0 0 0 chr6 90064900 90064946 -92350296 + (TG)n Simple_repeat Simple_repeat 2 47 0 1527 156 190 31 chr6 90064981 90065371 -92349871 - MLT2B1 LTR ERVL -66 454 3 2167 110 7 0 chr6 90065505 90065797 -92349445 - AluSc SINE Alu -15 294 1 432 248 0 8 chr6 90067013 90067130 -92348112 - MER94 DNA DNA -18 116 1 728 291 92 34 chr6 90067490 90067936 -92347306 + MLT1L LTR MaLR 144 615 0 181 263 50 50 chr6 90068165 90068245 -92346997 + L2 LINE L2 3234 3313 0 36 62 0 0 chr6 90069276 90069340 -92345902 + AT_rich Low_complexity Low_complexity 1 64 0 28477 62 3 1 chr6 90069348 90073179 -92342063 + L1P LINE L1 3 3840 -2306 372 344 10 15 chr6 90074436 90074597 -92340645 - MIR SINE MIR -61 147 17 246 396 27 18 chr6 90075523 90075748 -92339494 + L3 LINE CR1 323 549 -1028 724 289 41 27 chr6 90075797 90076091 -92339151 + L3 LINE CR1 967 1264 -313 253 313 71 10 chr6 90076079 90076178 -92339064 + MIR3 SINE MIR 97 201 -7 * 383 339 55 23 chr6 90076184 90076441 -92338801 + L3 LINE CR1 1253 1517 -60 283 238 0 0 chr6 90076491 90076554 -92338688 + LTR28 LTR ERV1 1 63 -957 * 2322 150 108 5 chr6 90076522 90076948 -92338294 + MER61D LTR ERV1 32 501 0 263 153 102 0 chr6 90077243 90077302 -92337940 + MER61D-int LTR ERV1 183 247 -4970 4603 150 37 59 chr6 90077413 90078779 -92336463 + MER61D-int LTR ERV1 266 4917 -300 461 115 0 13 chr6 90078776 90078854 -92336388 + MER61D-int LTR ERV1 2454 2530 -5007 * 13351 168 41 17 chr6 90078956 90082574 -92332668 + MER61D-int LTR ERV1 2615 5217 0 2229 157 106 7 chr6 90082574 90083035 -92332207 + MER61D LTR ERV1 1 501 0 205 278 14 56 chr6 90083122 90083143 -92332099 + L3b LINE CR1 1514 1534 -49 1077 161 86 0 chr6 90083143 90083317 -92331925 - MER5A DNA MER1_type 0 189 1 205 278 14 56 chr6 90083317 90083367 -92331875 + L3b LINE CR1 1534 1582 -1 306 0 0 0 chr6 90083834 90083868 -92331374 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 88 0 0 chr6 90085118 90085175 -92330067 + AT_rich Low_complexity Low_complexity 1 57 0 883 222 11 0 chr6 90085298 90085474 -92329768 - MER45A DNA AcHobo 0 178 1 273 98 0 0 chr6 90086408 90086449 -92328793 + (TC)n Simple_repeat Simple_repeat 2 42 0 23 54 0 0 chr6 90086572 90086609 -92328633 + AT_rich Low_complexity Low_complexity 1 37 0 1371 213 112 16 chr6 90087700 90087758 -92327484 - MER114 LTR ERV -38 610 559 1654 164 18 11 chr6 90087758 90088079 -92327163 + AluSx SINE Alu 1 323 0 1371 213 112 16 chr6 90088079 90088572 -92326670 - MER114 LTR ERV -89 559 5 25 83 0 0 chr6 90088809 90088869 -92326373 + AT_rich Low_complexity Low_complexity 1 60 0 21873 36 1 0 chr6 90088974 90092385 -92322857 - L1PA4 LINE L1 -3 6152 2714 31 26 0 0 chr6 90092705 90092743 -92322499 + AT_rich Low_complexity Low_complexity 1 38 0 1601 172 13 49 chr6 90092764 90093072 -92322170 + AluJo SINE Alu 1 297 -15 327 349 23 16 chr6 90093704 90093833 -92321409 + MIR SINE MIR 1 130 -132 252 0 0 0 chr6 90093833 90093861 -92321381 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 12197 23 3 0 chr6 90093948 90096147 -92319095 - L1PA2 LINE L1 -3 6152 3950 501 103 0 0 chr6 90096147 90096225 -92319017 - L1PA2 LINE L1 -2680 3466 3389 198 0 0 0 chr6 90097832 90097854 -92317388 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 262 296 68 0 chr6 90099113 90099201 -92316041 + L2 LINE L2 3219 3312 -1 2509 71 0 0 chr6 90099221 90099531 -92315711 - AluY SINE Alu -1 310 1 702 257 89 84 chr6 90099531 90099889 -92315353 - L2 LINE L2 -599 2715 2356 204 40 0 0 chr6 90100482 90100507 -92314735 + (T)n Simple_repeat Simple_repeat 1 25 0 20352 47 4 1 chr6 90100633 90103335 -92311907 + L1P LINE L1 1306 4015 -2131 475 261 96 68 chr6 90103333 90103731 -92311511 - HAL1 LINE L1 -1425 1082 674 * 465 214 21 14 chr6 90103844 90103984 -92311258 - MER114 LTR ERV -503 145 5 25 83 0 0 chr6 90104221 90104281 -92310961 + AT_rich Low_complexity Low_complexity 1 60 0 20960 37 5 0 chr6 90104387 90107748 -92307494 - L1PA4 LINE L1 -3 6152 2779 182 378 0 17 chr6 90108938 90109057 -92306185 - MIR SINE MIR -111 151 35 2269 91 0 10 chr6 90109553 90109849 -92305393 - AluSx SINE Alu -19 293 1 337 293 240 7 chr6 90110826 90110976 -92304266 - MIR SINE MIR -1 261 77 207 195 24 0 chr6 90111278 90111319 -92303923 + CT-rich Low_complexity Low_complexity 4 45 0 34884 63 29 3 chr6 90112306 90117972 -92297270 - L1PA7 LINE L1 0 6154 339 642 109 0 0 chr6 90118104 90118205 -92297037 + (TA)n Simple_repeat Simple_repeat 2 102 0 190 262 0 0 chr6 90119605 90119647 -92295595 + MER5B DNA MER1_type 1 42 -136 232 308 128 13 chr6 90119654 90119732 -92295510 - MER5B DNA MER1_type -91 87 1 22 0 0 0 chr6 90120689 90120711 -92294531 + AT_rich Low_complexity Low_complexity 1 22 0 2193 187 6 74 chr6 90121098 90121334 -92293908 - MLT1D LTR MaLR -1 504 253 1817 178 17 0 chr6 90121334 90121626 -92293616 - AluJo SINE Alu -15 297 1 2193 187 6 74 chr6 90121626 90121929 -92293313 - MLT1D LTR MaLR -252 253 2 23 0 0 0 chr6 90122202 90122225 -92293017 + AT_rich Low_complexity Low_complexity 1 23 0 287 284 84 11 chr6 90122628 90122723 -92292519 - MIR3 SINE MIR -2 206 105 246 282 94 68 chr6 90123672 90123789 -92291453 - L2 LINE L2 -5 3267 3148 247 318 11 23 chr6 90123992 90124080 -92291162 + L2 LINE L2 3227 3313 0 253 130 56 0 chr6 90124459 90124513 -92290729 - L1MA9 LINE L1 -5 6307 6251 2183 123 27 33 chr6 90124534 90124900 -92290342 - THE1B LTR MaLR 0 364 1 10396 85 22 52 chr6 90124905 90126522 -92288720 - THE1B-int LTR MaLR -12 1568 1 2267 111 22 35 chr6 90126522 90126891 -92288351 - THE1B LTR MaLR 0 364 1 6322 201 46 21 chr6 90126893 90128102 -92287140 - L1MA7 LINE L1 -30 6261 5084 1844 121 62 4 chr6 90128102 90128400 -92286842 + AluSg SINE Alu 1 314 0 6322 201 46 21 chr6 90128400 90129844 -92285398 - L1MA7 LINE L1 -1207 5084 3543 2195 83 0 4 chr6 90129927 90130205 -92285037 + AluY SINE Alu 1 277 -34 216 0 0 0 chr6 90130220 90130244 -92284998 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 747 242 123 9 chr6 90130642 90130869 -92284373 + MIR SINE MIR 9 261 -1 245 271 79 79 chr6 90132014 90132191 -92283051 + MLT1L LTR MaLR 36 212 -403 283 233 35 23 chr6 90132383 90132469 -92282773 + MLT1K LTR MaLR 473 559 -29 189 241 0 0 chr6 90132505 90132559 -92282683 + GA-rich Low_complexity Low_complexity 1 54 0 471 143 0 0 chr6 90133149 90133233 -92282009 + L1MA4A LINE L1 6220 6303 0 1167 134 10 36 chr6 90133397 90133591 -92281651 + AluSg/x SINE Alu 117 305 -5 1182 265 211 2 chr6 90133878 90134319 -92280923 + L2 LINE L2 1057 1589 -1725 234 282 102 88 chr6 90134485 90134620 -92280622 - MIR SINE MIR 0 262 121 2449 155 36 2 chr6 90134620 90135032 -92280210 - MSTB LTR MaLR 0 426 1 234 282 102 88 chr6 90135032 90135112 -92280130 - MIR SINE MIR -141 121 44 31444 55 114 0 chr6 90135311 90139790 -92275452 + L1P LINE L1 2 4990 -1156 15640 73 2 1 chr6 90139890 90142054 -92273188 + L1P LINE L1 416 2583 -3563 192 77 0 0 chr6 90143619 90143645 -92271597 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 1313 194 0 24 chr6 90143647 90143895 -92271347 - AluJb SINE Alu -70 242 1 210 114 45 0 chr6 90143905 90143954 -92271288 + (TA)n Simple_repeat Simple_repeat 1 51 0 566 249 111 0 chr6 90144005 90144199 -92271043 - MIR SINE MIR -4 258 44 1133 121 0 0 chr6 90144611 90144784 -92270458 - MER2 DNA MER2_type -172 173 1 508 286 119 40 chr6 90146540 90146881 -92268361 + MLT1J1 LTR MaLR 67 439 -11 997 180 22 6 chr6 90146881 90147064 -92268178 + MER5A DNA MER1_type 1 186 -3 623 356 59 16 chr6 90147109 90147480 -92267762 + L2 LINE L2 274 660 -2654 1327 340 143 13 chr6 90147486 90148567 -92266675 + L2 LINE L2 1649 2869 -445 273 253 63 0 chr6 90148569 90148648 -92266594 + MIR SINE MIR 70 153 -109 428 95 48 55 chr6 90149161 90149465 -92265777 + (TA)n Simple_repeat Simple_repeat 1 301 0 21 0 0 0 chr6 90149470 90149491 -92265751 + AT_rich Low_complexity Low_complexity 1 21 0 6826 61 5 3 chr6 90149491 90150967 -92264275 - L1PA7 LINE L1 -12 6142 4664 25 0 0 0 chr6 90151439 90151464 -92263778 + AT_rich Low_complexity Low_complexity 1 25 0 2127 122 7 3 chr6 90153294 90153588 -92261654 - AluSg SINE Alu -13 297 3 256 293 0 0 chr6 90153796 90153854 -92261388 - L2 LINE L2 -11 3261 3204 285 73 0 0 chr6 90154086 90154127 -92261115 + Alu SINE Alu 257 297 -5 2125 114 7 0 chr6 90154191 90154493 -92260749 + AluSx SINE Alu 1 304 0 4500 218 67 12 chr6 90154493 90155744 -92259498 + Charlie1 DNA MER1_type 1442 2761 0 2441 95 0 6 chr6 90155979 90156294 -92258948 + AluSq SINE Alu 1 313 0 15143 135 11 103 chr6 90156305 90159810 -92255432 + L1P LINE L1 12 3193 -2953 1075 91 0 0 chr6 90159811 90159943 -92255299 + AluY SINE Alu 1 132 -179 7076 21 0 0 chr6 90160062 90160876 -92254366 + L1PA2 LINE L1 5342 6155 0 2027 260 70 18 chr6 90160884 90161894 -92253348 + L1M3 LINE L1 4386 5445 -729 228 231 0 0 chr6 90161910 90161962 -92253280 + L1M3 LINE L1 5562 5613 -567 315 0 0 0 chr6 90161965 90162000 -92253242 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 463 255 37 16 chr6 90162232 90162456 -92252786 - MER97a DNA MER1_type? 0 894 802 1786 247 66 17 chr6 90162561 90163148 -92252094 - MER97a DNA MER1_type? -277 617 2 216 0 0 0 chr6 90163823 90163847 -92251395 + (T)n Simple_repeat Simple_repeat 1 24 0 341 261 34 34 chr6 90164031 90164150 -92251092 - L2 LINE L2 -3 3310 3192 461 297 60 12 chr6 90164312 90164561 -92250681 + MIR SINE MIR 2 262 0 335 188 0 0 chr6 90164718 90164782 -92250460 - LTR33A LTR ERVL 0 523 460 379 280 44 55 chr6 90165095 90165277 -92249965 - LTR50 LTR ERVL -608 187 8 21 36 0 0 chr6 90166970 90166998 -92248244 + AT_rich Low_complexity Low_complexity 1 28 0 814 314 110 3 chr6 90167098 90167620 -92247622 - L2 LINE L2 -259 3054 2478 490 305 17 50 chr6 90167620 90167859 -92247383 - L2 LINE L2 -2144 1170 940 240 353 22 22 chr6 90168000 90168136 -92247106 + MIR SINE MIR 90 225 -37 368 221 6 6 chr6 90168206 90168299 -92246943 + MIR3 SINE MIR 104 197 -11 24 0 0 0 chr6 90168452 90168476 -92246766 + AT_rich Low_complexity Low_complexity 1 24 0 774 287 60 0 chr6 90169125 90169341 -92245901 - MIR SINE MIR -19 243 15 395 288 0 39 chr6 90169421 90169574 -92245668 + MER112 DNA MER1_type 97 243 -17 398 241 103 17 chr6 90170907 90171023 -92244219 + MLT1J2 LTR MaLR 21 146 -304 360 302 74 16 chr6 90171026 90171215 -92244027 + MLT1J1 LTR MaLR 203 402 -44 583 303 102 29 chr6 90172481 90172795 -92242447 + MLT1J1 LTR MaLR 3 339 -107 9119 183 47 19 chr6 90172827 90174856 -92240386 + L1MC3 LINE L1 5696 7782 -3 259 203 94 0 chr6 90174921 90174985 -92240257 + MIR3 SINE MIR 137 206 -2 227 290 186 35 chr6 90177839 90177984 -92237258 - L2 LINE L2 0 3313 3147 1649 190 19 33 chr6 90178045 90178413 -92236829 - MLT1A1 LTR MaLR -2 363 1 1842 171 10 56 chr6 90178915 90179324 -92235918 + MLT1B LTR MaLR 1 390 0 221 333 54 18 chr6 90179347 90179458 -92235784 - MER5A DNA MER1_type -68 121 7 1382 216 16 29 chr6 90179469 90179775 -92235467 + AluJo SINE Alu 1 302 -10 252 366 122 32 chr6 90180489 90180612 -92234630 - L2 LINE L2 -2 3270 3137 313 320 16 8 chr6 90182264 90182386 -92232856 + MIR SINE MIR 64 186 -76 29 0 0 0 chr6 90182606 90182635 -92232607 + AT_rich Low_complexity Low_complexity 1 29 0 774 298 25 20 chr6 90182753 90182998 -92232244 - MIR SINE MIR -14 248 3 33 43 0 0 chr6 90183298 90183345 -92231897 + AT_rich Low_complexity Low_complexity 1 47 0 234 318 80 0 chr6 90183346 90183434 -92231808 + L3 LINE CR1 1480 1574 -3 384 173 125 0 chr6 90184075 90184179 -92231063 + MER114 LTR ERV 255 371 -277 1805 219 34 54 chr6 90184181 90184211 -92231031 + LTR40a LTR ERVL 4 33 -486 2481 52 3 10 chr6 90184211 90184516 -92230726 - AluY SINE Alu -8 303 1 1805 219 34 54 chr6 90184516 90184987 -92230255 + LTR40a LTR ERVL 33 495 -24 1416 218 35 0 chr6 90184988 90185277 -92229965 + AluJb SINE Alu 1 299 -13 368 39 0 20 chr6 90185277 90185328 -92229914 + (GGGGA)n Simple_repeat Simple_repeat 2 51 0 664 147 25 25 chr6 90185328 90185568 -92229674 + GA-rich Low_complexity Low_complexity 1 240 0 231 115 0 66 chr6 90185579 90185640 -92229602 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 599 155 24 24 chr6 90185650 90185818 -92229424 + GA-rich Low_complexity Low_complexity 4 171 0 201 39 0 0 chr6 90185818 90185844 -92229398 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 1094 249 63 85 chr6 90185973 90186434 -92228808 + HERVL40 LTR ERVL 120 570 -4960 5149 264 43 26 chr6 90186471 90189105 -92226137 + HERVL40 LTR ERVL 566 3298 -2232 679 308 153 60 chr6 90189110 90189910 -92225332 - L1M4 LINE L1 -1198 4948 4011 658 270 89 13 chr6 90189910 90190147 -92225095 + MIR SINE MIR 5 259 -3 679 308 153 60 chr6 90190147 90190477 -92224765 - L1M4 LINE L1 -2135 4011 3713 316 311 52 44 chr6 90190540 90190810 -92224432 - L1P LINE L1 -2505 3641 3370 438 311 65 67 chr6 90190910 90191586 -92223656 - L1M4 LINE L1 -2929 3217 2543 280 284 95 29 chr6 90191664 90191867 -92223375 - MLT1L LTR MaLR -8 607 290 758 284 105 18 chr6 90192533 90193320 -92221922 - L1 LINE L1 -1174 4972 4099 1466 276 103 3 chr6 90193456 90194040 -92221202 + L1ME3A LINE L1 5266 5907 -263 23 33 0 0 chr6 90194270 90194300 -92220942 + AT_rich Low_complexity Low_complexity 1 30 0 198 118 0 0 chr6 90194385 90194419 -92220823 + (TAA)n Simple_repeat Simple_repeat 2 35 0 27 62 0 0 chr6 90196077 90196125 -92219117 + AT_rich Low_complexity Low_complexity 1 48 0 417 357 70 11 chr6 90196555 90196740 -92218502 + L2 LINE L2 87 282 -3032 1988 142 3 7 chr6 90196771 90197067 -92218175 - AluJb SINE Alu -6 306 12 1162 334 122 23 chr6 90197076 90197914 -92217328 + L2 LINE L2 514 1434 -1880 772 299 149 13 chr6 90197945 90198320 -92216922 + L2 LINE L2 2888 3313 0 2646 250 48 18 chr6 90198336 90199755 -92215487 + L1ME2 LINE L1 4422 5886 -278 2197 156 105 55 chr6 90199755 90200250 -92214992 - MLT2B1 LTR ERVL 0 520 1 2646 250 48 18 chr6 90200250 90200296 -92214946 + L1ME2 LINE L1 5886 5929 -235 1356 308 82 12 chr6 90200296 90200783 -92214459 - MLT1G1 LTR MaLR 0 595 75 2076 106 0 4 chr6 90200804 90201078 -92214164 + AluSx SINE Alu 20 292 -20 923 179 35 48 chr6 90201120 90201349 -92213893 + L1ME2 LINE L1 5938 6163 -1 857 56 0 0 chr6 90203362 90203469 -92211773 - L1PA5 LINE L1 -143 6011 5905 233 271 213 8 chr6 90203826 90203948 -92211294 - MIR SINE MIR -37 225 79 305 264 72 24 chr6 90203949 90204074 -92211168 - MIR SINE MIR -47 215 85 378 0 0 0 chr6 90204248 90204290 -92210952 + (CA)n Simple_repeat Simple_repeat 2 43 0 251 284 157 30 chr6 90205233 90205367 -92209875 - MIR3 SINE MIR -31 177 27 220 269 39 39 chr6 90206159 90206237 -92209005 - L2 LINE L2 -5 3308 3231 245 283 152 20 chr6 90206297 90206396 -92208846 + MIR SINE MIR 138 249 -13 2083 224 55 9 chr6 90206510 90207036 -92208206 + L1MC4a LINE L1 7257 7806 -2 1487 190 70 14 chr6 90207342 90207790 -92207452 + MLT1D LTR MaLR 1 505 0 212 372 55 18 chr6 90207829 90208047 -92207195 + L2 LINE L2 2596 2821 -493 207 0 0 0 chr6 90209454 90209477 -92205765 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 237 158 53 66 chr6 90210187 90210263 -92204979 - L1ME4a LINE L1 -102 6019 5945 363 272 22 11 chr6 90210662 90210754 -92204488 - MER81 DNA DNA -21 93 1 353 367 62 0 chr6 90211343 90211471 -92203771 - MIR3 SINE MIR -52 156 21 1603 218 30 53 chr6 90211563 90212030 -92203212 - LTR40c LTR ERVL -9 456 1 197 208 56 97 chr6 90212555 90212627 -92202615 - MIR SINE MIR -108 154 86 1338 194 92 74 chr6 90213745 90214204 -92201038 - MLT1C LTR MaLR 0 467 1 292 290 60 0 chr6 90214322 90214422 -92200820 + L2 LINE L2 3206 3311 -2 209 346 79 10 chr6 90215389 90215490 -92199752 - MIR SINE MIR -135 127 20 285 284 290 11 chr6 90216412 90216595 -92198647 + MIR SINE MIR 15 248 -14 2273 165 110 78 chr6 90217289 90217559 -92197683 + L1MC3 LINE L1 5311 5571 -2214 2121 72 0 0 chr6 90217559 90217824 -92197418 + AluY SINE Alu 35 299 -12 2273 165 110 78 chr6 90217824 90218196 -92197046 + L1MC3 LINE L1 5571 5974 -1811 232 330 30 10 chr6 90218226 90218326 -92196916 + MLT1F1 LTR MaLR 36 137 -430 1969 118 40 40 chr6 90218326 90218530 -92196712 + L1MC3 LINE L1 7200 7403 -382 2745 101 3 3 chr6 90218530 90218905 -92196337 - THE1C LTR MaLR 0 375 1 1969 118 40 40 chr6 90218905 90219014 -92196228 + L1MC3 LINE L1 7403 7516 -269 1775 140 69 26 chr6 90219014 90219364 -92195878 + MLT1A1 LTR MaLR 1 365 0 1969 118 40 40 chr6 90219364 90219396 -92195846 + L1MC3 LINE L1 7515 7546 -239 23 33 0 0 chr6 90220279 90220309 -92194933 + AT_rich Low_complexity Low_complexity 1 30 0 283 291 58 48 chr6 90221046 90221252 -92193990 + MIR SINE MIR 13 220 -42 285 29 0 0 chr6 90221320 90221354 -92193888 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2173 52 3 81 chr6 90221354 90221662 -92193580 - AluSg SINE Alu -26 284 1 1270 194 152 39 chr6 90221705 90222061 -92193181 + MSTD LTR MaLR 1 396 0 193 29 29 29 chr6 90222464 90222499 -92192743 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2245 60 0 7 chr6 90222501 90222783 -92192459 - AluY SINE Alu -31 280 1 351 190 52 0 chr6 90223083 90223206 -92192036 + (TA)n Simple_repeat Simple_repeat 1 116 -456 2014 152 0 0 chr6 90223206 90223495 -92191747 + AluSx SINE Alu 3 291 -21 351 190 52 0 chr6 90223495 90223627 -92191615 + (TA)n Simple_repeat Simple_repeat 116 572 0 420 201 0 22 chr6 90223653 90223837 -92191405 + (TA)n Simple_repeat Simple_repeat 1 180 0 229 142 35 35 chr6 90223863 90223976 -92191266 + (TA)n Simple_repeat Simple_repeat 1 113 0 583 269 88 26 chr6 90224114 90224456 -92190786 - L1ME4a LINE L1 -4 6117 5755 591 237 71 108 chr6 90224631 90224926 -92190316 - MER102a DNA MER1_type -1 329 46 234 340 96 0 chr6 90225114 90225208 -92190034 - L2 LINE L2 -18 3254 3152 302 0 0 26 chr6 90226041 90226080 -92189162 + (CAT)n Simple_repeat Simple_repeat 2 39 0 386 291 77 22 chr6 90226082 90226264 -92188978 - MIR SINE MIR -5 257 66 551 226 165 18 chr6 90228547 90228711 -92186531 - MER20 DNA MER1_type -31 188 1 586 278 80 0 chr6 90228853 90229029 -92186213 + MIR SINE MIR 12 201 -61 718 275 99 38 chr6 90229285 90229729 -92185513 + HAL1b LINE L1 260 730 -618 305 228 91 82 chr6 90230039 90230258 -92184984 + L1MC4a LINE L1 2361 2581 -3959 311 331 19 19 chr6 90230349 90230609 -92184633 + L1MC4a LINE L1 2709 2968 -3572 275 204 28 28 chr6 90230842 90230950 -92184292 + (TA)n Simple_repeat Simple_repeat 1 108 0 1422 272 76 22 chr6 90230957 90231717 -92183525 + L1MC4a LINE L1 5481 5797 -743 455 136 0 11 chr6 90231717 90231805 -92183437 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 21 0 0 0 chr6 90231994 90232015 -92183227 + AT_rich Low_complexity Low_complexity 1 21 0 1414 218 87 8 chr6 90233908 90234275 -92180967 + MSTD LTR MaLR 1 396 0 569 184 0 9 chr6 90234277 90234386 -92180856 + MSTD-int LTR MaLR 2 109 -1626 545 234 48 0 chr6 90234500 90234624 -92180618 + MSTD-int LTR MaLR 114 243 -1492 1420 130 30 0 chr6 90234624 90234855 -92180387 - Tigger4(Zombi) DNA MER2_type 0 2731 2494 * 1619 180 4 0 chr6 90234851 90235118 -92180124 - Tigger4(Zombi) DNA MER2_type -2461 270 3 3584 269 48 24 chr6 90235119 90236157 -92179085 + MSTD-int LTR MaLR 241 1303 -432 7611 27 1 0 chr6 90236311 90237704 -92177538 + L1PA4 LINE L1 4766 6155 0 344 288 145 98 chr6 90238599 90238999 -92176243 + L2 LINE L2 2854 3272 0 2127 237 70 28 chr6 90239548 90239995 -92175247 + L1MEc LINE L1 22 449 -5947 2231 101 3 3 chr6 90239995 90240312 -92174930 + AluSq SINE Alu 3 313 0 2127 237 70 28 chr6 90240312 90240743 -92174499 + L1MEc LINE L1 449 1057 -5339 935 270 5 0 chr6 90240743 90240947 -92174295 - MLT1E2 LTR MaLR 0 626 422 700 226 0 0 chr6 90240947 90241071 -92174171 + FLAM_C SINE Alu 1 124 -19 1054 265 79 81 chr6 90241089 90241525 -92173717 - MLT1E2 LTR MaLR -193 431 3 806 280 144 17 chr6 90241545 90242016 -92173226 + L1MEc LINE L1 1110 1640 -4756 1545 274 74 19 chr6 90242649 90243120 -92172122 - L2 LINE L2 0 3313 2817 599 264 17 23 chr6 90243122 90243296 -92171946 - MER5B DNA MER1_type -5 173 1 944 230 104 79 chr6 90243297 90243381 -92171861 - L2 LINE L2 -505 2809 2729 921 120 0 0 chr6 90243381 90243523 -92171719 + (TA)n Simple_repeat Simple_repeat 2 143 0 2342 79 0 0 chr6 90243523 90243814 -92171428 - AluY SINE Alu -20 291 1 944 230 104 79 chr6 90243814 90244171 -92171071 - L2 LINE L2 -584 2730 2356 2552 52 0 10 chr6 90244764 90245074 -92170168 - AluY SINE Alu -4 307 1 26 39 0 20 chr6 90246795 90246834 -92168408 + AT_rich Low_complexity Low_complexity 1 40 -10 2279 54 0 7 chr6 90246834 90247110 -92168132 + AluY SINE Alu 23 296 -15 26 39 0 20 chr6 90247110 90247121 -92168121 + AT_rich Low_complexity Low_complexity 40 50 0 285 246 0 0 chr6 90247251 90247308 -92167934 - L2 LINE L2 -1 3312 3256 375 209 55 9 chr6 90247787 90247897 -92167345 - L1MC4 LINE L1 -4 8038 7924 1476 259 95 62 chr6 90247960 90249321 -92165921 - L1ME LINE L1 -4622 1458 6 864 255 66 79 chr6 90249350 90249521 -92165721 + Charlie7 DNA MER1_type 95 267 -2345 2378 115 120 5 chr6 90249521 90249905 -92165337 + MSTA LTR MaLR 1 428 0 864 255 66 79 chr6 90249905 90250326 -92164916 + Charlie7 DNA MER1_type 267 679 -1933 531 291 28 28 chr6 90250327 90250509 -92164733 - L2 LINE L2 -1 3312 3131 5828 86 22 7 chr6 90250661 90251495 -92163747 - L1MA2 LINE L1 0 6304 5459 220 200 0 0 chr6 90252636 90252676 -92162566 + GA-rich Low_complexity Low_complexity 4 43 0 222 37 0 0 chr6 90255208 90255235 -92160007 + (CAA)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr6 90255410 90255439 -92159803 + AT_rich Low_complexity Low_complexity 1 29 0 531 108 12 0 chr6 90256049 90256132 -92159110 + LTR9 LTR ERV1 443 526 -86 189 171 0 0 chr6 90256132 90256167 -92159075 + A-rich Low_complexity Low_complexity 99 133 0 1018 299 124 11 chr6 90256827 90257261 -92157981 - L3 LINE CR1 -1 1576 1094 376 22 0 0 chr6 90257306 90257352 -92157890 - MADE1 DNA Mariner -34 46 1 784 225 67 19 chr6 90258195 90258404 -92156838 - MIR SINE MIR -13 249 31 200 325 25 25 chr6 90258824 90258904 -92156338 - L3b LINE CR1 -96 1487 1408 355 370 34 74 chr6 90259740 90260091 -92155151 - L2 LINE L2 0 3272 2936 208 256 163 0 chr6 90260468 90260554 -92154688 + L3 LINE CR1 1267 1366 -211 1960 153 27 0 chr6 90260571 90260872 -92154370 + AluSx SINE Alu 4 312 0 584 321 49 5 chr6 90261343 90261567 -92153675 - MIR SINE MIR -1 261 28 456 266 104 35 chr6 90262125 90262298 -92152944 + MIR SINE MIR 78 262 0 208 326 113 45 chr6 90263434 90263655 -92151587 + MIR SINE MIR 25 260 -2 287 286 67 21 chr6 90263663 90263817 -92151425 - MIR SINE MIR -67 141 3 180 77 0 0 chr6 90263826 90263852 -92151390 + (T)n Simple_repeat Simple_repeat 1 26 0 262 194 28 0 chr6 90264046 90264118 -92151124 + (TA)n Simple_repeat Simple_repeat 1 74 0 554 287 48 24 chr6 90265103 90265312 -92149930 + MIR SINE MIR 44 257 -5 2302 71 0 0 chr6 90265536 90265840 -92149402 - AluY SINE Alu 0 304 1 779 231 48 16 chr6 90268148 90268334 -92146908 - MIR SINE MIR -69 193 2 2082 127 3 0 chr6 90269029 90269332 -92145910 + AluSx SINE Alu 1 304 0 606 273 69 65 chr6 90269617 90270167 -92145075 + HAL1 LINE L1 1151 1702 -805 221 168 69 20 chr6 90270232 90270333 -92144909 + (TATAA)n Simple_repeat Simple_repeat 4 109 0 188 95 48 32 chr6 90270370 90270433 -92144809 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 335 292 42 80 chr6 90270450 90270851 -92144391 + L1MEc LINE L1 1900 2285 -4111 359 219 67 9 chr6 90270851 90270956 -92144286 + HAL1 LINE L1 94 204 -2303 1270 280 74 45 chr6 90270958 90271555 -92143687 + HAL1 LINE L1 469 1082 -1425 * 22995 66 3 6 chr6 90271553 90274651 -92140591 - L1PA5 LINE L1 -2131 4015 928 245 33 0 0 chr6 90274644 90274674 -92140568 + L1PA5 LINE L1 4021 4050 -2096 * 10722 48 0 3 chr6 90274729 90276829 -92138413 + L1PA5 LINE L1 4054 6154 0 4761 114 6 6 chr6 90276870 90277590 -92137652 + L1PB2 LINE L1 5430 6149 -2 2158 257 67 11 chr6 90277603 90278418 -92136824 + HAL1 LINE L1 1419 2311 -196 254 95 24 0 chr6 90278424 90278466 -92136776 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 348 260 28 121 chr6 90278626 90278949 -92136293 + HAL1 LINE L1 1472 1764 -743 306 298 45 45 chr6 90279167 90279345 -92135897 + HAL1b LINE L1 745 922 -426 231 410 112 0 chr6 90279731 90279865 -92135377 - L2 LINE L2 -1 3271 3123 28 0 0 0 chr6 90280126 90280154 -92135088 + AT_rich Low_complexity Low_complexity 1 28 0 43 20 0 0 chr6 90280301 90280351 -92134891 + AT_rich Low_complexity Low_complexity 1 50 0 269 281 61 35 chr6 90280517 90280631 -92134611 - L2 LINE L2 -1 3271 3155 2007 90 0 4 chr6 90280768 90281035 -92134207 - AluSg SINE Alu -44 266 1 318 308 48 10 chr6 90281442 90281546 -92133696 + L2 LINE L2 3122 3229 -43 426 327 55 35 chr6 90281727 90281782 -92133460 - MIR SINE MIR -1 261 209 396 0 0 0 chr6 90281782 90281826 -92133416 + (TG)n Simple_repeat Simple_repeat 2 45 0 426 327 55 35 chr6 90281826 90282024 -92133218 - MIR SINE MIR -53 209 3 23 0 0 0 chr6 90282452 90282475 -92132767 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 90282516 90282537 -92132705 + AT_rich Low_complexity Low_complexity 1 21 0 410 246 89 9 chr6 90282537 90282723 -92132519 + MIR SINE MIR 38 236 -26 270 202 12 60 chr6 90282734 90282818 -92132424 - MIR SINE MIR -1 261 182 3539 154 25 48 chr6 90282949 90283663 -92131579 + L1MC2 LINE L1 5639 6336 -8 21 0 0 0 chr6 90283723 90283744 -92131498 + AT_rich Low_complexity Low_complexity 1 21 0 627 212 85 18 chr6 90283944 90284109 -92131133 + MER5A DNA MER1_type 1 176 -13 832 171 6 6 chr6 90284219 90284389 -92130853 + MER96B DNA MER1_type? 58 227 -190 21 0 0 0 chr6 90286356 90286377 -92128865 + AT_rich Low_complexity Low_complexity 1 21 0 1729 186 39 59 chr6 90286685 90287035 -92128207 + MSTD-int LTR MaLR 1335 1677 -58 2172 82 0 56 chr6 90287035 90287340 -92127902 - AluSc SINE Alu -21 288 1 1729 186 39 59 chr6 90287340 90287398 -92127844 + MSTD-int LTR MaLR 1677 1735 0 269 179 71 0 chr6 90287398 90287454 -92127788 + MSTD LTR MaLR 1 60 -368 1177 132 70 0 chr6 90287460 90287687 -92127555 - Tigger7 DNA MER2_type 0 2487 2245 257 170 0 0 chr6 90287688 90287735 -92127507 - Tigger7 DNA MER2_type -291 48 2 1376 197 72 31 chr6 90287736 90288056 -92127186 + MSTD LTR MaLR 64 396 0 364 313 18 18 chr6 90288995 90289158 -92126084 + MER117 DNA MER1_type 35 197 0 25 0 0 0 chr6 90290200 90290225 -92125017 + AT_rich Low_complexity Low_complexity 1 25 0 238 342 8 50 chr6 90290451 90290571 -92124671 + MER5A DNA MER1_type 74 188 -1 267 248 110 9 chr6 90292023 90292132 -92123110 + LTR16C LTR ERVL 372 491 0 1558 164 3 105 chr6 90292210 90292552 -92122690 + AluJo SINE Alu 1 307 -5 14895 154 16 5 chr6 90292853 90295348 -92119894 + L1MA3 LINE L1 9 2530 -5035 1684 64 8 4 chr6 90295348 90295583 -92119659 + MER75B DNA T2_type 1 236 -7 2868 102 17 0 chr6 90295590 90296049 -92119193 + L1MA3 LINE L1 2527 2993 -4572 * 12073 155 28 6 chr6 90296046 90299559 -92115683 + L1MA3 LINE L1 4136 7724 0 454 244 44 30 chr6 90300226 90300361 -92114881 + MER69 DNA AcHobo 1 137 -1089 231 311 0 0 chr6 90300390 90300451 -92114791 + MER69 DNA AcHobo 2466 2526 0 705 233 17 28 chr6 90301235 90301415 -92113827 - MIR SINE MIR 0 262 85 450 258 206 52 chr6 90301506 90301588 -92113654 + MLT1K LTR MaLR 135 203 -385 2386 206 50 37 chr6 90301588 90302203 -92113039 - MLT1E3 LTR MaLR -1 623 1 450 258 206 52 chr6 90302203 90302407 -92112835 + MLT1K LTR MaLR 203 465 -123 273 173 19 0 chr6 90302406 90302458 -92112784 + MLT1K LTR MaLR 536 588 0 * 401 211 28 16 chr6 90302649 90302791 -92112451 + L1MD3 LINE L1 7639 7995 0 25 65 0 0 chr6 90302960 90303006 -92112236 + AT_rich Low_complexity Low_complexity 1 46 0 2259 114 3 0 chr6 90303137 90303445 -92111797 - AluSx SINE Alu -3 309 1 2387 134 10 25 chr6 90303451 90303847 -92111395 + MLT1B LTR MaLR 1 390 0 11613 125 23 49 chr6 90303872 90305972 -92109270 + Tigger1 DNA MER2_type 1 2047 -371 917 137 0 128 chr6 90305975 90306179 -92109063 - AluJo SINE Alu -132 180 3 2009 152 6 3 chr6 90306190 90306525 -92108717 + Tigger1 DNA MER2_type 2083 2418 0 249 303 45 83 chr6 90306908 90307040 -92108202 - MER5B DNA MER1_type -41 137 11 477 282 167 6 chr6 90307058 90307214 -92108028 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chr6 90307735 90307756 -92107486 + AT_rich Low_complexity Low_complexity 1 21 0 15929 93 19 22 chr6 90307772 90310732 -92104510 - L1PA7 LINE L1 -7 6147 3194 1461 128 0 40 chr6 90310732 90310959 -92104283 - AluY SINE Alu -93 218 1 15929 93 19 22 chr6 90310959 90311192 -92104050 - L1PA7 LINE L1 -2960 3194 2962 2067 48 0 0 chr6 90311493 90311743 -92103499 - L1PA5 LINE L1 0 6154 5905 236 253 165 0 chr6 90312100 90312191 -92103051 - MIR SINE MIR -37 225 120 289 268 73 24 chr6 90312224 90312347 -92102895 - MIR SINE MIR -49 213 85 342 0 0 0 chr6 90312521 90312559 -92102683 + (CA)n Simple_repeat Simple_repeat 2 39 0 264 284 157 30 chr6 90313502 90313636 -92101606 - MIR3 SINE MIR -31 177 27 219 291 38 38 chr6 90314428 90314507 -92100735 - L2 LINE L2 -5 3267 3189 241 283 152 20 chr6 90314566 90314665 -92100577 + MIR SINE MIR 138 249 -13 1926 226 55 9 chr6 90314779 90315305 -92099937 + L1MC4a LINE L1 7257 7806 -2 1380 190 70 14 chr6 90315611 90316059 -92099183 + MLT1D LTR MaLR 1 505 0 221 372 55 18 chr6 90316098 90316316 -92098926 + L2 LINE L2 2596 2821 -493 207 0 0 0 chr6 90317723 90317746 -92097496 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 332 272 22 11 chr6 90318931 90319023 -92096219 - MER81 DNA DNA -21 93 1 350 367 62 0 chr6 90319612 90319740 -92095502 - MIR3 SINE MIR -52 156 21 1458 236 21 45 chr6 90319832 90320299 -92094943 - LTR40c LTR ERVL -9 456 1 195 208 56 97 chr6 90320824 90320896 -92094346 - MIR SINE MIR -108 154 86 1322 196 89 72 chr6 90322014 90322473 -92092769 - MLT1C LTR MaLR 0 467 1 294 158 211 0 chr6 90322613 90322689 -92092553 + L2 LINE L2 3220 3311 -2 210 346 79 10 chr6 90323656 90323757 -92091485 - MIR SINE MIR -135 127 20 281 284 290 11 chr6 90324679 90324862 -92090380 + MIR SINE MIR 15 248 -14 2089 165 110 78 chr6 90325557 90325827 -92089415 + L1MC3 LINE L1 5311 5571 -2214 2120 72 0 0 chr6 90325827 90326092 -92089150 + AluY SINE Alu 35 299 -12 2089 165 110 78 chr6 90326092 90326464 -92088778 + L1MC3 LINE L1 5571 5974 -1811 2443 142 40 32 chr6 90326468 90326798 -92088444 + L1MC3 LINE L1 7070 7396 -389 2751 101 3 3 chr6 90326798 90327173 -92088069 - THE1C LTR MaLR 0 375 1 2443 142 40 32 chr6 90327173 90327282 -92087960 + L1MC3 LINE L1 7396 7516 -269 1773 131 71 29 chr6 90327282 90327632 -92087610 + MLT1A1 LTR MaLR 1 365 0 2443 142 40 32 chr6 90327632 90327664 -92087578 + L1MC3 LINE L1 7516 7546 -239 23 33 0 0 chr6 90328546 90328576 -92086666 + AT_rich Low_complexity Low_complexity 1 30 0 300 291 58 48 chr6 90329313 90329519 -92085723 + MIR SINE MIR 13 220 -42 2205 60 3 90 chr6 90329564 90329587 -92085655 - AluSg SINE Alu -7 303 280 285 29 0 0 chr6 90329587 90329621 -92085621 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2205 60 3 90 chr6 90329621 90329929 -92085313 - AluSg SINE Alu -30 280 1 1257 194 152 39 chr6 90329972 90330328 -92084914 + MSTD LTR MaLR 1 396 0 2242 74 0 7 chr6 90330719 90331050 -92084192 - AluY SINE Alu 0 311 1 252 149 58 23 chr6 90331361 90331473 -92083769 + (TA)n Simple_repeat Simple_repeat 1 123 -57 2032 152 0 0 chr6 90331473 90331762 -92083480 + AluSx SINE Alu 3 291 -21 252 149 58 23 chr6 90331762 90331823 -92083419 + (TA)n Simple_repeat Simple_repeat 123 180 0 49 60 0 0 chr6 90331834 90331918 -92083324 + AT_rich Low_complexity Low_complexity 1 84 0 420 201 0 22 chr6 90331920 90332104 -92083138 + (TA)n Simple_repeat Simple_repeat 1 180 0 229 142 35 35 chr6 90332130 90332243 -92082999 + (TA)n Simple_repeat Simple_repeat 2 114 0 499 268 88 26 chr6 90332381 90332721 -92082521 - L1ME4a LINE L1 -4 6117 5757 586 244 58 117 chr6 90332898 90333258 -92081984 - MER102b DNA MER1_type -1 340 2 530 346 78 78 chr6 90333948 90334384 -92080858 - L2 LINE L2 0 3272 2837 2286 123 21 21 chr6 90334693 90335066 -92080176 - THE1C LTR MaLR -2 373 1 22 35 0 0 chr6 90335238 90335267 -92079975 + AT_rich Low_complexity Low_complexity 1 29 0 215 244 0 0 chr6 90335909 90335954 -92079288 - MIR SINE MIR -67 195 151 1282 265 9 2 chr6 90336620 90337039 -92078203 + L1 LINE L1 2473 2894 -3252 * 1622 176 10 0 chr6 90337024 90337336 -92077906 + L1MB1 LINE L1 5573 5887 -302 669 58 0 0 chr6 90337337 90337424 -92077818 + L1P1 LINE L1 12 98 -6048 * 34498 41 42 2 chr6 90337393 90342201 -92073041 + L1P1 LINE L1 580 5589 -566 515 176 20 0 chr6 90342301 90342403 -92072839 - L1M4 LINE L1 -1552 4594 4491 228 67 0 0 chr6 90342421 90342451 -92072791 + (TG)n Simple_repeat Simple_repeat 1 30 0 1524 171 15 25 chr6 90342451 90342601 -92072641 - AluJb SINE Alu -33 279 132 288 0 0 0 chr6 90342601 90342633 -92072609 + (TA)n Simple_repeat Simple_repeat 1 32 0 1524 171 15 25 chr6 90342633 90342756 -92072486 - AluJb SINE Alu -180 132 9 827 219 13 0 chr6 90343389 90343540 -92071702 + FRAM SINE Alu 1 146 -30 264 200 0 50 chr6 90344379 90344439 -92070803 - AluJ/FRAM SINE Alu -13 289 233 23 0 0 0 chr6 90344446 90344469 -92070773 + AT_rich Low_complexity Low_complexity 1 23 0 2957 71 0 2 chr6 90344492 90344888 -92070354 + L1PA10 LINE L1 5513 5907 -261 1869 63 4 0 chr6 90344881 90345133 -92070109 + L1PA10 LINE L1 5723 5975 -193 * 270 0 0 0 chr6 90345994 90346024 -92069218 + (TG)n Simple_repeat Simple_repeat 2 31 0 249 294 15 0 chr6 90346413 90346481 -92068761 - L2 LINE L2 -53 3219 3151 266 222 0 0 chr6 90346536 90346599 -92068643 + MLT2D LTR ERVL 1 63 -351 5810 168 13 19 chr6 90346701 90347889 -92067353 + L1 LINE L1 3777 4957 -1189 258 198 12 49 chr6 90348553 90348634 -92066608 + A-rich Low_complexity Low_complexity 1 78 0 489 264 71 50 chr6 90350597 90351084 -92064158 + L1ME LINE L1 636 1018 -4960 354 268 57 41 chr6 90353427 90353550 -92061692 + L2 LINE L2 3140 3264 -8 336 388 27 0 chr6 90353665 90353889 -92061353 + L1MC4a LINE L1 4475 4704 -1442 2002 157 0 13 chr6 90354041 90354354 -92060888 - AluSx SINE Alu -3 309 1 26947 42 38 2 chr6 90354571 90358136 -92057106 - L1P LINE L1 -2449 3697 5 217 386 89 5 chr6 90358556 90358758 -92056484 + L3 LINE CR1 282 500 -1077 249 319 18 18 chr6 90359084 90359197 -92056045 - MLT2E LTR ERVL -479 149 37 536 300 258 6 chr6 90360459 90360819 -92054423 + L3b LINE CR1 1121 1571 -12 437 243 155 0 chr6 90362700 90362848 -92052394 + MIR SINE MIR 92 262 0 1619 191 18 21 chr6 90362974 90363310 -92051932 - MER57A LTR ERV1 -1 402 68 22 35 0 0 chr6 90363568 90363597 -92051645 + AT_rich Low_complexity Low_complexity 1 29 0 1558 133 25 4 chr6 90364108 90364348 -92050894 - AluSp SINE Alu -68 245 1 1043 91 8 0 chr6 90364348 90364480 -92050762 - AluSp SINE Alu -178 135 3 915 258 42 57 chr6 90364493 90364590 -92050652 + L1MC4a LINE L1 5061 5158 -1315 2065 127 7 0 chr6 90364590 90364890 -92050352 - AluSx SINE Alu -10 302 1 2035 136 6 0 chr6 90364900 90365224 -92050018 - L1PA14 LINE L1 -3 6158 5833 915 258 42 57 chr6 90365224 90365364 -92049878 + L1MC4a LINE L1 5167 5308 -1165 2232 106 3 0 chr6 90365364 90365665 -92049577 + AluSg SINE Alu 1 302 -8 915 258 42 57 chr6 90365665 90365976 -92049266 + L1MC4a LINE L1 5308 5613 -860 3382 213 129 39 chr6 90365983 90367328 -92047914 + L1MC4a LINE L1 5757 7222 -586 32962 89 7 59 chr6 90367360 90371985 -92043257 - L1PA6 LINE L1 -4 6150 1286 12798 39 1 0 chr6 90371985 90374321 -92040921 + L1PA4 LINE L1 3818 6155 0 32962 89 7 59 chr6 90374321 90374729 -92040513 - L1PA6 LINE L1 -4868 1286 858 2435 93 0 0 chr6 90374729 90375040 -92040202 - AluY SINE Alu 0 311 1 32962 89 7 59 chr6 90375040 90376495 -92038747 - L1PA6 LINE L1 -5296 858 11 1069 186 5 14 chr6 90376504 90376725 -92038517 + L1MC4a LINE L1 7209 7427 -381 438 197 17 8 chr6 90376760 90376877 -92038365 + L1MD3 LINE L1 7877 7994 -1 28403 39 3 0 chr6 90377005 90381447 -92033795 + L1PA3 LINE L1 1697 6152 -3 1083 187 81 35 chr6 90381454 90381764 -92033478 + L1MB7 LINE L1 5861 6184 0 * 13253 169 25 17 chr6 90381763 90386139 -92029103 + L1PB1 LINE L1 2035 6374 -510 387 0 0 0 chr6 90386139 90386182 -92029060 + (CA)n Simple_repeat Simple_repeat 2 44 0 * 486 0 0 0 chr6 90386181 90386235 -92029007 + (TA)n Simple_repeat Simple_repeat 2 55 0 13253 169 25 17 chr6 90386182 90386353 -92028889 + L1PB1 LINE L1 6374 6542 -342 1775 91 0 0 chr6 90386353 90386573 -92028669 - AluSc SINE Alu -89 220 1 13253 169 25 17 chr6 90386573 90386839 -92028403 + L1PB1 LINE L1 6542 6884 0 1515 165 26 4 chr6 90386839 90387106 -92028136 + L1MC1 LINE L1 5446 5718 -626 3130 125 14 25 chr6 90387106 90387618 -92027624 - Tigger4(Zombi) DNA MER2_type 0 2731 2226 762 143 0 0 chr6 90387616 90387728 -92027514 - Tigger4(Zombi) DNA MER2_type -2617 114 3 * 263 241 0 0 chr6 90387682 90387736 -92027506 + MER46A DNA MER2_type 97 150 -86 * 1232 164 5 5 chr6 90387737 90387957 -92027285 + L1MC1 LINE L1 5724 5943 -390 261 330 113 51 chr6 90388077 90388468 -92026774 - L2 LINE L2 -774 2540 2126 217 371 89 0 chr6 90389600 90389724 -92025518 - L2 LINE L2 0 3272 3138 1855 134 7 4 chr6 90390867 90391163 -92024079 - AluSq SINE Alu 0 333 37 17847 92 8 8 chr6 90391394 90394735 -92020507 + L1PA7 LINE L1 2801 6154 0 207 195 24 0 chr6 90395722 90395763 -92019479 + GA-rich Low_complexity Low_complexity 4 45 0 344 293 240 7 chr6 90396065 90396215 -92019027 + MIR SINE MIR 77 261 -1 2260 91 0 10 chr6 90397192 90397488 -92017754 + AluSx SINE Alu 1 293 -19 181 378 0 17 chr6 90397984 90398103 -92017139 + MIR SINE MIR 35 151 -111 189 261 62 62 chr6 90399274 90399339 -92015903 - L2 LINE L2 -11 3261 3197 214 349 141 7 chr6 90399407 90399556 -92015686 + MIR3 SINE MIR 30 198 -10 229 333 83 0 chr6 90399584 90399680 -92015562 - L2 LINE L2 -31 3241 3138 22 56 0 0 chr6 90399693 90399729 -92015513 + AT_rich Low_complexity Low_complexity 1 36 0 3215 144 45 7 chr6 90400429 90401006 -92014236 - L1MB2 LINE L1 -7 6164 5566 275 337 40 10 chr6 90401228 90401329 -92013913 + L2 LINE L2 3180 3283 -30 26 30 0 0 chr6 90401893 90401926 -92013316 + AT_rich Low_complexity Low_complexity 1 33 0 368 272 105 0 chr6 90402512 90402626 -92012616 - MER94 DNA DNA -1 133 8 202 286 143 42 chr6 90407082 90407201 -92008041 + L2 LINE L2 3141 3271 -1 * 239 276 66 72 chr6 90407200 90407381 -92007861 + L2 LINE L2 2881 3060 -212 1977 193 85 26 chr6 90407406 90407646 -92007596 - Charlie1 DNA MER1_type -22 2739 2515 2168 114 3 3 chr6 90407646 90407945 -92007297 - AluSx SINE Alu -11 301 3 1977 193 85 26 chr6 90407945 90408279 -92006963 - Charlie1 DNA MER1_type -246 2515 2131 308 218 0 0 chr6 90408283 90408338 -92006904 + MER5B DNA MER1_type 124 178 0 4987 143 50 6 chr6 90408660 90409496 -92005746 + L1MC1 LINE L1 5433 6305 -28 2376 199 107 11 chr6 90409523 90410140 -92005102 - L1MC4 LINE L1 -224 7818 7143 2313 103 0 0 chr6 90410493 90410793 -92004449 + AluSg SINE Alu 1 300 -10 2625 247 39 42 chr6 90410884 90411807 -92003435 - L1ME LINE L1 -5106 964 45 603 239 161 0 chr6 90412125 90412280 -92002962 + MER5A DNA MER1_type 9 188 -1 983 279 123 49 chr6 90412499 90413068 -92002174 - MLT1L LTR MaLR 0 615 5 243 103 0 0 chr6 90413890 90413929 -92001313 + (TGG)n Simple_repeat Simple_repeat 1 39 0 248 352 63 19 chr6 90414247 90414406 -92000836 + MIR SINE MIR 47 212 -50 217 320 125 23 chr6 90414603 90414731 -92000511 + MIR3 SINE MIR 27 167 -41 6586 72 8 8 chr6 90416433 90417461 -91997781 + L1PB1 LINE L1 5117 6150 -1 2473 188 33 6 chr6 90418632 90419117 -91996125 + L1MC3 LINE L1 6407 6904 -881 404 121 0 0 chr6 90419132 90419190 -91996052 + L1MC3 LINE L1 7046 7103 -682 298 265 0 15 chr6 90419193 90419261 -91995981 + MLT1F1 LTR MaLR 45 111 -456 2251 176 52 85 chr6 90419265 90419878 -91995364 + L1MC3 LINE L1 7186 7778 -7 405 344 101 11 chr6 90420626 90420902 -91994340 - MER102b DNA MER1_type 0 341 41 3364 125 2 2 chr6 90421082 90421579 -91993663 - LOR1a LTR ERV1 0 497 1 2605 214 71 31 chr6 90422157 90422620 -91992622 + MER97b DNA MER1_type? 1 503 -550 5259 187 21 11 chr6 90422620 90423689 -91991553 - Tigger6a DNA MER2_type 0 1083 4 2605 214 71 31 chr6 90423689 90423930 -91991312 + MER97b DNA MER1_type? 503 733 -320 406 239 0 0 chr6 90423960 90424048 -91991194 + MER97b DNA MER1_type? 966 1053 0 196 343 0 0 chr6 90424048 90424115 -91991127 + L2 LINE L2 2693 2759 -555 320 279 59 37 chr6 90424141 90424277 -91990965 - MER5A DNA MER1_type -31 158 20 227 318 9 37 chr6 90424276 90424383 -91990859 + L2 LINE L2 2761 2864 -450 * 532 268 151 45 chr6 90424703 90425128 -91990114 - MLT1L LTR MaLR 0 615 146 293 312 76 19 chr6 90425621 90425778 -91989464 - MLT1K LTR MaLR -421 167 2 339 145 0 32 chr6 90426467 90426529 -91988713 + Tigger5 DNA MER2_type 20 79 -2244 350 337 116 11 chr6 90426595 90426785 -91988457 - MIR SINE MIR -33 229 20 330 354 77 17 chr6 90426930 90427111 -91988131 + MIR3 SINE MIR 3 194 -14 645 292 57 10 chr6 90427304 90427496 -91987746 - MIR SINE MIR -1 261 61 1734 139 51 51 chr6 90428012 90428387 -91986855 - THE1C LTR MaLR 0 375 1 4013 146 43 9 chr6 90428948 90429642 -91985600 - LTR8A LTR ERV1 -8 719 2 341 264 148 54 chr6 90431754 90432031 -91983211 + L1ME LINE L1 5382 5684 -437 450 268 186 5 chr6 90432276 90432470 -91982772 + MIR SINE MIR 2 230 -32 804 134 0 22 chr6 90432803 90432937 -91982305 + AluSq/x SINE Alu 1 131 -182 749 21 21 0 chr6 90432957 90433051 -91982191 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 1116 169 0 6 chr6 90433053 90433236 -91982006 + AluJb SINE Alu 131 312 0 987 267 126 85 chr6 90433999 90434537 -91980705 - HAL1 LINE L1 -1200 1307 793 920 177 174 64 chr6 90434537 90434864 -91980378 - MLT1A1 LTR MaLR -2 363 1 987 267 126 85 chr6 90434864 90435339 -91979903 - HAL1 LINE L1 -1714 793 252 275 209 218 9 chr6 90436643 90436753 -91978489 + LTR67 LTR ERVL 424 556 -1 198 0 0 0 chr6 90438400 90438422 -91976820 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 262 296 68 0 chr6 90439680 90439768 -91975474 + L2 LINE L2 3219 3312 -1 2184 123 20 0 chr6 90439788 90440090 -91975152 - AluSc SINE Alu -1 308 1 890 220 16 11 chr6 90440094 90440276 -91974966 - MER5A DNA MER1_type -6 183 1 354 245 0 43 chr6 90441210 90441304 -91973938 - L1MC4 LINE L1 -1339 6703 6614 1233 158 22 26 chr6 90491563 90491791 -91923451 - L1MB1 LINE L1 0 6168 5942 1790 154 13 10 chr6 90491798 90492096 -91923146 - AluJo SINE Alu -9 303 5 1894 140 0 13 chr6 90492110 90492410 -91922832 - AluJo SINE Alu -14 298 3 2183 99 3 0 chr6 90492419 90492713 -91922529 - AluSp SINE Alu -18 295 1 745 265 79 1 chr6 90492796 90493084 -91922158 + L1 LINE L1 4024 4329 -1817 1676 171 46 23 chr6 90493084 90493389 -91921853 - AluJb SINE Alu 0 312 1 1046 182 12 6 chr6 90493390 90493658 -91921584 - L1MB1 LINE L1 -203 5975 5693 553 217 86 0 chr6 90493710 90493885 -91921357 - L1MB7 LINE L1 -8 6176 5987 403 232 102 48 chr6 90493916 90494209 -91921033 + MLT1G LTR MaLR 81 369 -173 253 246 0 0 chr6 90495212 90495273 -91919969 - MER89 LTR ERV1 0 559 499 234 319 35 0 chr6 90495347 90495460 -91919782 - MER89 LTR ERV1 -190 369 253 1280 233 91 32 chr6 90496353 90496401 -91918841 - L1MB3 LINE L1 -4 6179 6135 2117 97 7 7 chr6 90496401 90496690 -91918552 - AluSx SINE Alu -21 291 3 1280 233 91 32 chr6 90496690 90497105 -91918137 - L1MB3 LINE L1 -48 6135 5689 972 171 0 0 chr6 90497377 90497529 -91917713 + FRAM SINE Alu 3 154 -12 819 160 0 0 chr6 90498069 90498346 -91916896 + GA-rich Low_complexity Low_complexity 1 277 0 1548 259 86 4 chr6 90499036 90499535 -91915707 + L1MC2 LINE L1 5804 6343 -1 285 29 0 0 chr6 90499687 90499721 -91915521 + (CTG)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr6 90500166 90500189 -91915053 + (GA)n Simple_repeat Simple_repeat 2 24 0 2139 90 0 0 chr6 90500190 90500467 -91914775 - AluSx SINE Alu -35 277 1 348 230 151 0 chr6 90500468 90500607 -91914635 + Charlie1 DNA MER1_type 2536 2695 -66 286 290 93 9 chr6 90500694 90500801 -91914441 + MIR3 SINE MIR 43 158 -50 230 313 40 0 chr6 90503471 90503570 -91911672 - MER69 DNA AcHobo -25 2501 2399 305 305 76 0 chr6 90503806 90503937 -91911305 - MER69 DNA AcHobo -245 2281 2141 272 236 42 0 chr6 90504589 90504661 -91910581 - MER69 DNA AcHobo -2350 176 102 374 214 88 31 chr6 90505323 90505482 -91909760 + MLT1A2 LTR MaLR 1 168 -206 1754 153 0 0 chr6 90505916 90506178 -91909064 + AluJo SINE Alu 29 290 -22 2392 80 0 13 chr6 90506179 90506493 -91908749 + AluY SINE Alu 1 310 -1 237 119 0 0 chr6 90507315 90507357 -91907885 + (GGAGA)n Simple_repeat Simple_repeat 1 42 0 397 248 55 35 chr6 90507895 90507972 -91907270 - Charlie5 DNA MER1_type -243 2381 2298 2377 91 0 0 chr6 90507972 90508280 -91906962 + AluSx SINE Alu 1 308 -4 397 248 55 35 chr6 90508280 90508347 -91906895 - Charlie5 DNA MER1_type -326 2298 2234 2431 61 0 0 chr6 90508939 90509235 -91906007 + AluY SINE Alu 1 296 -15 25 51 0 0 chr6 90514363 90514402 -91900840 + GC_rich Low_complexity Low_complexity 1 39 0 863 251 98 15 chr6 90518032 90518056 -91897186 - L1MB7 LINE L1 0 6184 6163 1073 214 140 12 chr6 90518056 90518378 -91896864 + MLT1A1 LTR MaLR 2 364 -1 863 251 98 15 chr6 90518378 90518679 -91896563 - L1MB7 LINE L1 -21 6163 5832 341 349 0 0 chr6 90518768 90518897 -91896345 + (CA)n Simple_repeat Simple_repeat 1 129 0 998 53 23 0 chr6 90519518 90519649 -91895593 + AluY SINE Alu 1 134 -177 2339 48 3 0 chr6 90519649 90519940 -91895302 + AluY SINE Alu 1 292 -19 1462 192 7 36 chr6 90520381 90520689 -91894553 - AluY SINE Alu -2 299 1 889 98 0 38 chr6 90521807 90521939 -91893303 + AluSq/x SINE Alu 6 132 -180 2051 74 3 74 chr6 90521942 90522266 -91892976 + AluSg SINE Alu 1 301 -9 252 186 62 107 chr6 90522831 90523008 -91892234 - MER20B DNA MER1_type -36 747 579 265 256 128 0 chr6 90523297 90523375 -91891867 + MLT1L LTR MaLR 347 434 -181 348 281 59 20 chr6 90523702 90523855 -91891387 + MLT1D LTR MaLR 28 186 -319 2071 108 41 3 chr6 90525922 90526217 -91889025 - AluSx SINE Alu -6 306 1 364 261 90 0 chr6 90526295 90526406 -91888836 + Tigger3(Golem) DNA MER2_type 2899 3019 -10 351 0 0 0 chr6 90527732 90527771 -91887471 + (TG)n Simple_repeat Simple_repeat 2 40 0 42 77 0 0 chr6 90528903 90528994 -91886248 + GC_rich Low_complexity Low_complexity 1 91 0 26 50 0 0 chr6 90529074 90529114 -91886128 + GC_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr6 90529193 90529221 -91886021 + GC_rich Low_complexity Low_complexity 1 28 0 225 125 0 106 chr6 90530146 90530250 -91884992 + (AGGGGG)n Simple_repeat Simple_repeat 5 97 0 2008 85 3 14 chr6 90532207 90532490 -91882752 + AluSx SINE Alu 1 280 -32 300 186 76 52 chr6 90532632 90532804 -91882438 + (CAGCC)n Simple_repeat Simple_repeat 5 180 0 294 142 101 59 chr6 90532950 90533119 -91882123 + (CAGCC)n Simple_repeat Simple_repeat 1 176 0 * 302 208 64 40 chr6 90533040 90533275 -91881967 + (CCCCAG)n Simple_repeat Simple_repeat 1 240 0 266 296 61 20 chr6 90533877 90533975 -91881267 + MIR SINE MIR 47 148 -114 212 313 144 36 chr6 90536191 90536386 -91878856 - MIR SINE MIR -12 250 35 181 304 14 29 chr6 90536551 90536620 -91878622 + MER5B DNA MER1_type 105 172 -6 308 219 0 47 chr6 90537564 90537733 -91877509 + (ATGGTG)n Simple_repeat Simple_repeat 4 164 0 673 164 0 35 chr6 90537746 90537917 -91877325 + (ATGGTG)n Simple_repeat Simple_repeat 5 169 0 505 275 12 54 chr6 90537923 90538090 -91877152 - MIR SINE MIR -11 251 92 211 299 0 11 chr6 90543155 90543242 -91872000 + G-rich Low_complexity Low_complexity 1 86 0 26 64 0 0 chr6 90545452 90545499 -91869743 + GC_rich Low_complexity Low_complexity 1 47 0 28 29 0 0 chr6 90545878 90545913 -91869329 + GC_rich Low_complexity Low_complexity 1 35 0 187 77 26 26 chr6 90545926 90545965 -91869277 + (CGGGGG)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr6 90546001 90546025 -91869217 + GC_rich Low_complexity Low_complexity 1 24 0 1726 118 20 39 chr6 90546187 90546492 -91868750 + AluJb SINE Alu 1 299 -13 195 205 0 0 chr6 90546569 90546608 -91868634 + MIR SINE MIR 109 147 -61 331 255 99 21 chr6 90550314 90550513 -91864729 + MLT1B LTR MaLR 119 345 -122 237 338 130 13 chr6 90550858 90551012 -91864230 - MIR SINE MIR -61 201 30 2006 116 24 7 chr6 90551051 90551344 -91863898 - AluSx SINE Alu -14 298 1 211 253 23 46 chr6 90551353 90551440 -91863802 - MIR SINE MIR -70 192 108 414 253 110 0 chr6 90553300 90553446 -91861796 + G-rich Low_complexity Low_complexity 5 166 0 405 270 26 0 chr6 90555769 90555884 -91859358 + MIR SINE MIR 45 162 -100 193 250 67 0 chr6 90557211 90557271 -91857971 - L2 LINE L2 -210 3062 2999 220 300 22 22 chr6 90559222 90559312 -91855930 + MIR SINE MIR 77 166 -96 462 297 68 0 chr6 90559351 90559499 -91855743 - MIR SINE MIR -6 256 99 222 236 97 0 chr6 90560201 90560273 -91854969 + MIR SINE MIR 60 138 -124 196 275 113 0 chr6 90560548 90560628 -91854614 + MER5A DNA MER1_type 2 90 -99 293 256 0 13 chr6 90560749 90560827 -91854415 + MER91A DNA MER1_type 1 77 -119 271 233 41 0 chr6 90561047 90561120 -91854122 - MER81 DNA DNA -38 76 1 197 273 193 11 chr6 90561372 90561460 -91853782 - L2 LINE L2 -1 3312 3209 258 304 143 18 chr6 90562529 90562697 -91852545 - MER91B DNA MER1_type -1 189 1 198 0 0 0 chr6 90563369 90563391 -91851851 + (CAGGG)n Simple_repeat Simple_repeat 1 22 0 200 333 0 17 chr6 90564165 90564339 -91850903 + GA-rich Low_complexity Low_complexity 4 174 0 2209 86 28 0 chr6 90564472 90564763 -91850479 - AluSg1 SINE Alu -10 299 1 292 305 118 43 chr6 90565083 90565270 -91849972 + L2 LINE L2 3058 3258 -14 888 175 10 6 chr6 90565379 90565868 -91849374 + (TGGA)n Simple_repeat Simple_repeat 1 491 0 594 181 20 0 chr6 90565880 90566029 -91849213 + (TGGA)n Simple_repeat Simple_repeat 3 154 0 265 316 171 0 chr6 90566339 90566491 -91848751 + L2 LINE L2 2579 2756 -558 198 398 23 0 chr6 90566686 90566774 -91848468 + L2 LINE L2 3175 3264 -49 384 265 24 77 chr6 90567311 90567481 -91847761 - MIR SINE MIR -55 207 47 * 491 256 128 57 chr6 90567424 90567651 -91847591 + MIR SINE MIR 12 254 -8 2155 99 27 0 chr6 90567762 90568054 -91847188 + AluSx SINE Alu 1 300 -12 305 303 118 6 chr6 90568054 90568232 -91847010 - L1M4 LINE L1 -2685 3461 3264 309 172 69 0 chr6 90568266 90568324 -91846918 - L1M4 LINE L1 -2939 3207 3146 562 331 5 22 chr6 90569608 90569792 -91845450 + MIR SINE MIR 81 261 -1 2531 52 0 3 chr6 90570088 90570398 -91844844 + AluY SINE Alu 1 309 -2 380 307 166 3 chr6 90571110 90571406 -91843836 + MLT1G1 LTR MaLR 236 579 -16 250 353 68 23 chr6 90571437 90571570 -91843672 + MIR SINE MIR 85 223 -39 470 245 112 5 chr6 90571572 90571760 -91843482 + MLT1C LTR MaLR 53 260 -207 4083 191 42 10 chr6 90573950 90574738 -91840504 - Tigger1 DNA MER2_type -1425 993 171 2372 82 0 0 chr6 90574738 90575044 -91840198 + AluSq SINE Alu 1 306 -7 4083 191 42 10 chr6 90575044 90575169 -91840073 - Tigger1 DNA MER2_type -2247 171 51 227 270 40 10 chr6 90576183 90576283 -91838959 + (CCCA)n Simple_repeat Simple_repeat 2 104 0 463 196 6 30 chr6 90576340 90576508 -91838734 + (CCCA)n Simple_repeat Simple_repeat 4 167 0 319 253 188 32 chr6 90576577 90576977 -91838265 - MLT1D LTR MaLR -6 499 38 228 258 0 0 chr6 90577643 90577740 -91837502 + (CA)n Simple_repeat Simple_repeat 1 97 0 202 217 0 22 chr6 90577762 90577808 -91837434 + (CA)n Simple_repeat Simple_repeat 1 45 0 334 248 7 7 chr6 90577830 90577967 -91837275 + (CA)n Simple_repeat Simple_repeat 1 137 0 452 248 4 0 chr6 90578014 90578272 -91836970 + (CA)n Simple_repeat Simple_repeat 1 259 0 538 226 4 17 chr6 90578329 90578574 -91836668 + (CA)n Simple_repeat Simple_repeat 1 241 0 324 233 23 74 chr6 90579354 90579530 -91835712 + (CCCCAA)n Simple_repeat Simple_repeat 6 172 0 198 171 0 0 chr6 90579540 90579581 -91835661 + (CCCTAA)n Simple_repeat Simple_repeat 6 46 0 403 293 89 56 chr6 90581307 90581612 -91833630 + L1MEc LINE L1 665 1007 -5198 373 204 98 23 chr6 90581705 90581837 -91833405 - MLT1C LTR MaLR -231 236 95 821 210 17 0 chr6 90583801 90583977 -91831265 - MER2 DNA MER2_type -165 180 2 368 294 57 76 chr6 90584025 90584287 -91830955 - L2 LINE L2 -12 3260 3004 21 0 0 0 chr6 90584573 90584594 -91830648 + AT_rich Low_complexity Low_complexity 1 21 0 2295 83 0 7 chr6 90584595 90584895 -91830347 + AluSx SINE Alu 1 298 -14 2260 75 0 3 chr6 90584895 90585189 -91830053 + AluY SINE Alu 1 293 -18 292 171 26 26 chr6 90585197 90585273 -91829969 + MLT1C LTR MaLR 62 137 -330 280 293 50 35 chr6 90586425 90586623 -91828619 + MLT1C LTR MaLR 90 290 -300 642 86 0 0 chr6 90586773 90586880 -91828362 - AluSp/q SINE Alu 0 311 205 1565 197 62 23 chr6 90587069 90587477 -91827765 - LTR8 LTR ERV1 0 691 309 822 237 45 45 chr6 90587713 90588025 -91827217 - LTR8 LTR ERV1 -379 312 1 230 207 0 73 chr6 90588496 90588578 -91826664 + G-rich Low_complexity Low_complexity 6 81 0 737 316 208 18 chr6 90589015 90589964 -91825278 + L1MEc LINE L1 7 1135 -5261 238 336 45 0 chr6 90590090 90590224 -91825018 + L1MEc LINE L1 1086 1225 -4992 254 329 70 47 chr6 90590604 90590649 -91824593 + L1MEc LINE L1 1852 1894 -4502 2414 55 3 0 chr6 90590649 90590942 -91824300 - AluY SINE Alu -17 294 1 254 329 70 47 chr6 90590942 90591109 -91824133 + L1MEc LINE L1 1894 2069 -4327 403 299 90 0 chr6 90592110 90592244 -91822998 - MIR SINE MIR -21 241 96 261 236 56 0 chr6 90592511 90592583 -91822659 - LTR67 LTR ERVL -480 77 2 992 159 16 11 chr6 90592652 90592841 -91822401 - AluJo SINE Alu -2 310 121 253 215 31 0 chr6 90593694 90593759 -91821483 - MER53 DNA DNA 0 189 123 2507 68 0 0 chr6 90593760 90594070 -91821172 - AluY SINE Alu -1 310 1 718 256 25 5 chr6 90594138 90594337 -91820905 + L1MB3 LINE L1 5980 6182 -1 251 204 29 68 chr6 90594318 90594421 -91820821 + L1MB7 LINE L1 6080 6178 -6 * 2233 97 3 7 chr6 90594613 90594923 -91820319 + AluSx SINE Alu 1 309 -3 305 283 87 14 chr6 90595477 90595615 -91819627 - MLT1K LTR MaLR -29 559 412 347 281 125 86 chr6 90595925 90596310 -91818932 + MLT1L LTR MaLR 20 419 -196 342 286 126 25 chr6 90596310 90596429 -91818813 + L1ME3A LINE L1 6035 6165 -5 267 277 229 6 chr6 90596429 90596595 -91818647 + MLT1L LTR MaLR 403 605 -10 1041 70 53 0 chr6 90597169 90597222 -91818020 + (CACCAT)n Simple_repeat Simple_repeat 1 235 0 1041 70 53 0 chr6 90597222 90597393 -91817849 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 1073 115 0 16 chr6 90597528 90597711 -91817531 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 358 270 71 24 chr6 90599523 90599649 -91815593 - MIR SINE MIR -14 248 117 264 314 35 0 chr6 90602101 90602187 -91813055 - MIR SINE MIR -59 149 61 356 321 8 15 chr6 90606485 90606619 -91808623 + MLT1L LTR MaLR 321 453 -162 1586 216 64 33 chr6 90606970 90607488 -91807754 + MLT2B3 LTR ERVL 21 554 0 556 311 110 19 chr6 90607521 90607908 -91807334 + MLT1C LTR MaLR 1 432 -35 1989 132 7 3 chr6 90607908 90608204 -91807038 - AluSx SINE Alu -15 297 1 556 311 110 19 chr6 90608204 90608244 -91806998 + MLT1C LTR MaLR 432 467 0 183 304 166 40 chr6 90609403 90609650 -91805592 - L2 LINE L2 -572 2742 2465 367 313 20 7 chr6 90609744 90609894 -91805348 + MLT1D LTR MaLR 34 185 -320 372 280 93 0 chr6 90609897 90610079 -91805163 + MLT1D LTR MaLR 298 496 -9 205 287 139 19 chr6 90610712 90610820 -91804422 + L2 LINE L2 3174 3294 -19 270 203 58 0 chr6 90610987 90611056 -91804186 - MLT1D LTR MaLR -108 397 325 * 556 319 63 4 chr6 90611054 90611308 -91803934 + MLT1K LTR MaLR 314 582 -6 207 189 8 107 chr6 90611908 90612030 -91803212 + GA-rich Low_complexity Low_complexity 4 113 0 392 183 76 18 chr6 90612345 90612466 -91802776 - MSTC LTR MaLR -28 398 211 222 333 101 0 chr6 90612609 90612708 -91802534 + L2 LINE L2 3163 3271 -1 624 211 6 11 chr6 90612754 90612929 -91802313 + GA-rich Low_complexity Low_complexity 1 174 0 433 214 0 0 chr6 90614969 90615053 -91800189 - AluJ/FRAM SINE Alu 0 312 229 794 77 10 0 chr6 90615595 90615699 -91799543 + AluSx SINE Alu 1 105 -207 1883 178 68 32 chr6 90615699 90616142 -91799100 - LTR2B LTR ERV1 0 490 32 1535 88 0 0 chr6 90616159 90616353 -91798889 + AluSx SINE Alu 98 291 -19 325 353 69 28 chr6 90616357 90616575 -91798667 - HAL1 LINE L1 -48 2459 2233 180 125 0 0 chr6 90616868 90616900 -91798342 + (C)n Simple_repeat Simple_repeat 1 32 0 258 344 13 20 chr6 90617016 90617167 -91798075 + CT-rich Low_complexity Low_complexity 5 154 0 1502 164 35 4 chr6 90617641 90617897 -91797345 - AluJo SINE Alu -48 264 1 265 327 27 20 chr6 90617964 90618114 -91797128 - HAL1 LINE L1 -763 1744 1594 2454 72 0 0 chr6 90618116 90618421 -91796821 - AluSx SINE Alu -7 305 1 24 0 0 0 chr6 90618423 90618447 -91796795 + AT_rich Low_complexity Low_complexity 1 24 0 2252 108 0 0 chr6 90618447 90618752 -91796490 - AluSx SINE Alu -7 305 1 456 276 82 5 chr6 90618754 90618950 -91796292 - L1MEc LINE L1 -3784 2431 2221 429 227 110 6 chr6 90619159 90619322 -91795920 - L1MEc LINE L1 -4198 2198 2019 975 281 116 0 chr6 90619637 90620139 -91795103 + L1MB5 LINE L1 5615 6174 0 348 290 48 7 chr6 90620428 90620573 -91794669 + MLT1D LTR MaLR 51 201 -304 202 272 33 43 chr6 90626445 90626537 -91788705 + (TCCA)n Simple_repeat Simple_repeat 4 94 0 269 314 34 42 chr6 90626578 90626696 -91788546 - L2 LINE L2 -30 3283 3167 313 194 94 62 chr6 90627433 90627593 -91787649 - MLT1H1 LTR MaLR -70 485 321 339 345 11 0 chr6 90628611 90628849 -91786393 + (TG)n Simple_repeat Simple_repeat 1 240 0 340 331 11 11 chr6 90628888 90629066 -91786176 + (TG)n Simple_repeat Simple_repeat 2 179 0 332 317 5 38 chr6 90629273 90629459 -91785783 + (TG)n Simple_repeat Simple_repeat 1 180 0 399 347 11 6 chr6 90629554 90629730 -91785512 + (TG)n Simple_repeat Simple_repeat 1 177 0 799 254 54 45 chr6 90629913 90630248 -91784994 + L1MB7 LINE L1 5825 6162 -22 357 299 85 70 chr6 90630289 90630449 -91784793 - L2 LINE L2 -2 3311 3155 2094 99 3 30 chr6 90630449 90630752 -91784490 + AluSq SINE Alu 1 295 -18 2328 60 0 3 chr6 90630754 90631072 -91784170 + AluY SINE Alu 1 317 0 357 299 85 70 chr6 90631072 90631178 -91784064 - L2 LINE L2 -158 3155 3037 1342 210 75 6 chr6 90631178 90631525 -91783717 + L1MA9 LINE L1 4837 5207 -939 2129 229 28 5 chr6 90631670 90632261 -91782981 + L1MA9 LINE L1 5193 5793 -498 251 143 0 36 chr6 90632299 90632355 -91782887 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 279 79 0 0 chr6 90632359 90632397 -91782845 + (CA)n Simple_repeat Simple_repeat 2 39 0 315 125 0 62 chr6 90632412 90632492 -91782750 + (GGGGA)n Simple_repeat Simple_repeat 2 76 0 192 152 0 0 chr6 90632498 90632531 -91782711 + (CA)n Simple_repeat Simple_repeat 2 34 0 777 128 0 69 chr6 90632555 90632616 -91782626 + (GGGGA)n Simple_repeat Simple_repeat 2 66 -110 369 62 0 0 chr6 90632616 90632664 -91782578 + (CA)n Simple_repeat Simple_repeat 2 49 0 777 128 0 69 chr6 90632664 90632790 -91782452 + (GGGGA)n Simple_repeat Simple_repeat 66 176 0 414 248 0 0 chr6 90632794 90632903 -91782339 + (CA)n Simple_repeat Simple_repeat 2 110 0 207 69 0 0 chr6 90632939 90632968 -91782274 + (GA)n Simple_repeat Simple_repeat 1 29 0 780 243 73 4 chr6 90632969 90632980 -91782262 + L1MA9 LINE L1 5815 5824 -488 254 50 25 0 chr6 90632980 90633020 -91782222 + (CAGGG)n Simple_repeat Simple_repeat 2 42 0 780 243 73 4 chr6 90633020 90633280 -91781962 + L1MA9 LINE L1 5824 6105 -207 1071 146 109 0 chr6 90633282 90633474 -91781768 - AluJb SINE Alu -14 298 86 715 234 29 6 chr6 90633492 90633663 -91781579 + L1MA9 LINE L1 6138 6312 0 181 258 15 15 chr6 90633696 90633762 -91781480 - L2 LINE L2 -325 2988 2923 497 243 53 20 chr6 90634805 90634957 -91780285 + MER3 DNA MER1_type 48 204 -5 294 340 94 0 chr6 90634963 90635069 -91780173 + MIR SINE MIR 32 147 -115 182 69 35 0 chr6 90635238 90635267 -91779975 - MER5A DNA MER1_type -156 33 4 1140 117 10 35 chr6 90638669 90638866 -91776376 - AluSg/x SINE Alu 0 312 121 400 245 7 39 chr6 90639272 90639427 -91775815 + G-rich Low_complexity Low_complexity 2 151 0 502 250 2 44 chr6 90639438 90639877 -91775365 + G-rich Low_complexity Low_complexity 1 420 0 413 236 3 36 chr6 90639902 90640230 -91775012 + G-rich Low_complexity Low_complexity 1 317 0 327 120 20 40 chr6 90640271 90640371 -91774871 + (CAGAGA)n Simple_repeat Simple_repeat 5 102 0 372 352 97 57 chr6 90640376 90640913 -91774329 + L1M4c LINE L1 937 1513 -1230 2129 117 0 0 chr6 90640922 90641228 -91774014 + AluSg SINE Alu 1 306 0 1476 139 0 19 chr6 90641245 90641504 -91773738 + AluSq SINE Alu 6 259 -54 443 308 108 50 chr6 90642096 90642482 -91772760 + L1MB5 LINE L1 4216 4675 -1471 228 300 0 0 chr6 90643064 90643124 -91772118 + (TG)n Simple_repeat Simple_repeat 1 60 0 2039 175 43 14 chr6 90643124 90643319 -91771923 + Tigger2a DNA MER2_type 1 189 -2519 396 0 0 0 chr6 90643319 90643363 -91771879 + (TG)n Simple_repeat Simple_repeat 1 44 0 553 104 0 215 chr6 90643363 90643507 -91771735 - FLAM_A SINE Alu -19 114 2 2039 175 43 14 chr6 90643507 90643732 -91771510 + Tigger2a DNA MER2_type 188 434 0 339 278 0 40 chr6 90643959 90644132 -91771110 + (CACCAT)n Simple_repeat Simple_repeat 1 166 0 229 271 82 71 chr6 90645302 90645472 -91769770 + LTR33 LTR ERVL 37 208 -313 223 339 9 9 chr6 90645657 90645772 -91769470 + CT-rich Low_complexity Low_complexity 2 116 0 1684 222 100 32 chr6 90646686 90647185 -91768057 + L1MB5 LINE L1 5293 5825 -349 1751 161 0 27 chr6 90647186 90647485 -91767757 + AluSx SINE Alu 1 291 -21 332 305 67 12 chr6 90648413 90648577 -91766665 - Charlie8 DNA MER1_type -2208 209 37 509 247 177 14 chr6 90650134 90650382 -91764860 - MER33 DNA MER1_type 0 363 34 275 231 15 0 chr6 90653100 90653165 -91762077 - Alu SINE Alu -4 297 232 808 125 7 15 chr6 90653274 90653410 -91761832 + AluSg/x SINE Alu 175 309 -1 294 281 308 9 chr6 90654195 90654416 -91760826 + L2 LINE L2 3027 3313 0 246 269 19 56 chr6 90655087 90655247 -91759995 + (CGGGG)n Simple_repeat Simple_repeat 5 158 0 204 200 0 0 chr6 90656283 90656318 -91758924 + (CGGA)n Simple_repeat Simple_repeat 2 36 0 623 249 40 0 chr6 90661245 90661418 -91753824 + MLT1B LTR MaLR 1 180 -210 271 270 44 0 chr6 90661705 90661842 -91753400 + MLT1D LTR MaLR 167 309 -81 401 247 11 39 chr6 90662305 90662483 -91752759 + G-rich Low_complexity Low_complexity 2 174 0 205 234 35 71 chr6 90662498 90662639 -91752603 + G-rich Low_complexity Low_complexity 2 137 0 271 189 0 0 chr6 90663269 90663322 -91751920 + G-rich Low_complexity Low_complexity 1 53 0 363 181 0 0 chr6 90663898 90663970 -91751272 + (TG)n Simple_repeat Simple_repeat 1 72 0 233 138 0 52 chr6 90664086 90664144 -91751098 + (TG)n Simple_repeat Simple_repeat 2 56 0 246 260 10 30 chr6 90664159 90664259 -91750983 + (ACGTG)n Simple_repeat Simple_repeat 1 98 0 323 245 48 27 chr6 90664642 90664789 -91750453 + L1ME LINE L1 5371 5520 -650 225 293 189 12 chr6 90664957 90665121 -91750121 + MER91A DNA MER1_type 4 196 0 498 195 0 139 chr6 90666657 90667033 -91748209 + C-rich Low_complexity Low_complexity 1 323 0 248 341 0 0 chr6 90668058 90668234 -91747008 + (CAGAG)n Simple_repeat Simple_repeat 5 180 0 221 333 12 12 chr6 90669302 90669473 -91745769 + (TCCG)n Simple_repeat Simple_repeat 3 173 0 358 318 47 0 chr6 90671015 90671144 -91744098 + MLT1D LTR MaLR 370 504 -1 52 50 0 0 chr6 90672725 90672805 -91742437 + GC_rich Low_complexity Low_complexity 1 80 0 25 95 0 0 chr6 90672854 90672928 -91742314 + GC_rich Low_complexity Low_complexity 1 74 0 207 180 31 87 chr6 90673028 90673189 -91742053 + (CCGGG)n Simple_repeat Simple_repeat 5 156 0 25 0 0 0 chr6 90673201 90673226 -91742016 + GC_rich Low_complexity Low_complexity 1 25 0 217 118 29 73 chr6 90673234 90673302 -91741940 + (CGGG)n Simple_repeat Simple_repeat 3 67 0 1233 109 16 11 chr6 90773331 90773515 -91641727 + L1PA7 LINE L1 5963 6147 -7 21 0 0 0 chr6 90773531 90773552 -91641690 + AT_rich Low_complexity Low_complexity 1 21 0 441 284 174 7 chr6 90774072 90774227 -91641015 + MER5A DNA MER1_type 9 189 0 237 303 45 83 chr6 90774245 90774377 -91640865 + MER5B DNA MER1_type 11 137 -41 2009 152 6 3 chr6 90774760 90775095 -91640147 - Tigger1 DNA MER2_type 0 2418 2083 917 137 0 128 chr6 90775106 90775310 -91639932 + AluJo SINE Alu 3 180 -132 11613 125 23 49 chr6 90775313 90777413 -91637829 - Tigger1 DNA MER2_type -371 2047 1 2254 151 8 25 chr6 90777438 90777835 -91637407 - MLT1B LTR MaLR 0 390 1 2113 128 3 0 chr6 90777841 90778139 -91637103 + AluSx SINE Alu 1 299 -13 401 211 28 16 chr6 90778647 90778789 -91636453 - L1MD3 LINE L1 0 7995 7639 439 245 177 46 chr6 90778980 90779235 -91636007 - MLT1K LTR MaLR 0 588 368 2446 203 50 37 chr6 90779235 90779850 -91635392 + MLT1E3 LTR MaLR 1 623 -1 439 245 177 46 chr6 90779850 90779932 -91635310 - MLT1K LTR MaLR -220 368 135 705 233 17 28 chr6 90780023 90780203 -91635039 + MIR SINE MIR 85 262 0 29141 114 14 65 chr6 90781094 90783835 -91631407 - L1PA7 LINE L1 -227 5927 3048 1605 101 0 40 chr6 90783835 90784062 -91631180 - AluY SINE Alu -93 218 1 29141 114 14 65 chr6 90784062 90787569 -91627673 - L1PA7 LINE L1 -3106 3048 12 2467 92 0 6 chr6 90787580 90787894 -91627348 - AluSq SINE Alu -1 312 1 4506 218 67 11 chr6 90788129 90789379 -91625863 - Charlie1 DNA MER1_type 0 2761 1442 190 0 0 0 chr6 90789379 90789400 -91625842 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2130 113 0 0 chr6 90789400 90789681 -91625561 - AluSx SINE Alu -29 283 9 297 73 0 0 chr6 90789723 90789786 -91625456 - Alu SINE Alu 0 319 257 254 293 0 0 chr6 90790018 90790076 -91625166 + L2 LINE L2 3204 3261 -11 2166 116 7 3 chr6 90790284 90790578 -91624664 + AluSg SINE Alu 3 297 -13 25 0 0 0 chr6 90792408 90792433 -91622809 + AT_rich Low_complexity Low_complexity 1 25 0 6832 61 8 5 chr6 90792905 90794381 -91620861 + L1PA7 LINE L1 4664 6142 -12 21 0 0 0 chr6 90794381 90794402 -91620840 + AT_rich Low_complexity Low_complexity 1 21 0 428 95 48 55 chr6 90794407 90794711 -91620531 + (TA)n Simple_repeat Simple_repeat 1 301 0 277 253 63 0 chr6 90795224 90795303 -91619939 - MIR SINE MIR -109 153 70 1318 341 141 13 chr6 90795305 90796387 -91618855 - L2 LINE L2 -445 2869 1649 614 356 59 16 chr6 90796393 90796764 -91618478 - L2 LINE L2 -2654 660 274 998 180 22 6 chr6 90796809 90796992 -91618250 - MER5A DNA MER1_type -3 186 1 611 258 127 32 chr6 90797003 90797378 -91617864 - MLT1J1 LTR MaLR -22 424 3 1194 121 0 0 chr6 90799089 90799262 -91615980 + MER2 DNA MER2_type 1 173 -172 234 180 16 98 chr6 90799385 90799446 -91615796 + MER2 DNA MER2_type 290 345 0 573 249 111 0 chr6 90799674 90799868 -91615374 + MIR SINE MIR 44 258 -4 210 114 45 0 chr6 90799919 90799963 -91615279 + (TA)n Simple_repeat Simple_repeat 2 47 0 1300 194 0 24 chr6 90799978 90800226 -91615016 + AluJb SINE Alu 1 242 -70 192 125 0 0 chr6 90800228 90800260 -91614982 + (A)n Simple_repeat Simple_repeat 1 32 0 2202 203 108 24 chr6 90802911 90803058 -91612184 + L1MC4 LINE L1 6458 6591 -1451 351 0 0 0 chr6 90803058 90803097 -91612145 + (TG)n Simple_repeat Simple_repeat 2 40 0 2202 203 108 24 chr6 90803097 90803485 -91611757 + L1MC4 LINE L1 6591 7038 -1004 2036 234 67 24 chr6 90803542 90803870 -91611372 + L1MC4 LINE L1 7260 7573 -469 315 0 0 0 chr6 90803870 90803905 -91611337 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2036 234 67 24 chr6 90803905 90804081 -91611161 + L1MC4 LINE L1 7573 7797 -245 2003 151 10 61 chr6 90804081 90804200 -91611042 + MLT1B LTR MaLR 1 125 -265 2243 109 0 0 chr6 90804200 90804494 -91610748 + AluSg SINE Alu 9 302 -8 2003 151 10 61 chr6 90804494 90804785 -91610457 + MLT1B LTR MaLR 125 390 0 2036 234 67 24 chr6 90804785 90804894 -91610348 + L1MC4 LINE L1 7797 7900 -142 2298 39 0 0 chr6 90805127 90805406 -91609836 + L1PA4 LINE L1 5874 6152 -3 25 0 0 0 chr6 90805406 90805431 -91609811 + AT_rich Low_complexity Low_complexity 1 25 0 5300 48 0 0 chr6 90805456 90806104 -91609138 + L1PA8 LINE L1 5516 6163 -9 1477 163 78 8 chr6 90806188 90806445 -91608797 - AluJo SINE Alu -37 275 1 855 296 57 51 chr6 90807246 90807635 -91607607 + MLT1I LTR MaLR 19 409 0 486 216 43 29 chr6 90808707 90808846 -91606396 - MER103 DNA DNA -10 156 16 1708 168 39 36 chr6 90809992 90810355 -91604887 - MLT1A1 LTR MaLR 0 365 2 2429 173 7 12 chr6 90810356 90810634 -91604608 - MLT1A1-int LTR MaLR 0 1735 1458 2961 163 79 56 chr6 90810634 90811345 -91603897 - LTR8A LTR ERV1 0 727 1 2429 173 7 12 chr6 90811345 90811489 -91603753 - MLT1A1-int LTR MaLR -277 1458 1315 2068 147 83 5 chr6 90812025 90812420 -91602822 - MSTB LTR MaLR 0 426 1 21 57 0 0 chr6 90812682 90812717 -91602525 + AT_rich Low_complexity Low_complexity 1 35 0 26 74 0 0 chr6 90812802 90812856 -91602386 + AT_rich Low_complexity Low_complexity 1 54 0 1757 98 62 43 chr6 90814215 90814520 -91600722 - AluY SINE Alu 0 311 1 373 256 156 25 chr6 90814942 90815102 -91600140 + L2 LINE L2 3086 3266 -47 374 275 124 28 chr6 90815281 90815499 -91599743 + L1ME4a LINE L1 5746 5984 -137 * 9487 163 82 77 chr6 90815494 90815863 -91599379 + L1MC3 LINE L1 5055 5421 -2364 2043 128 21 3 chr6 90815863 90816153 -91599089 + AluSx SINE Alu 1 295 -17 9487 163 82 77 chr6 90816153 90816379 -91598863 + L1MC3 LINE L1 5421 5644 -2141 1494 172 8 23 chr6 90816379 90816641 -91598601 - AluJo SINE Alu -54 258 1 9487 163 82 77 chr6 90816641 90818176 -91597066 + L1MC3 LINE L1 5644 7192 -593 349 275 0 0 chr6 90818176 90818267 -91596975 + MLT1F1 LTR MaLR 35 125 -442 9487 163 82 77 chr6 90818267 90818864 -91596378 + L1MC3 LINE L1 7192 7785 0 261 274 97 8 chr6 90818845 90818969 -91596273 + L1ME4a LINE L1 5944 6078 -43 * 335 255 20 0 chr6 90819092 90819194 -91596048 - MER70B LTR ERVL -17 561 458 729 262 6 0 chr6 90820289 90820457 -91594785 + MIR SINE MIR 91 259 -3 1851 165 0 3 chr6 90820457 90820748 -91594494 + AluSx SINE Alu 1 290 -22 4448 174 32 21 chr6 90821180 90822450 -91592792 - L1MB7 LINE L1 -7 6177 4891 2463 207 36 15 chr6 90822449 90823058 -91592184 + L1 LINE L1 2408 3029 -3117 * 31 26 0 0 chr6 90823092 90823130 -91592112 + AT_rich Low_complexity Low_complexity 1 38 0 496 156 104 0 chr6 90823135 90823231 -91592011 + L1MA3 LINE L1 23 128 -7437 15737 159 24 13 chr6 90823239 90826714 -91588528 + L1MA3 LINE L1 1106 4681 -3043 1759 154 47 7 chr6 90826714 90827012 -91588230 + AluJb SINE Alu 3 312 0 15737 159 24 13 chr6 90827012 90829563 -91585679 + L1MA3 LINE L1 4681 7203 -521 811 71 18 0 chr6 90829564 90829677 -91585565 + L1PA4 LINE L1 2 116 -6030 * 34180 42 4 2 chr6 90829649 90834711 -91580531 + L1PA4 LINE L1 1087 6155 0 3130 115 30 15 chr6 90834709 90835238 -91580004 + L1MA3 LINE L1 7188 7724 0 * 316 264 141 29 chr6 90835509 90835751 -91579491 - L1MEc LINE L1 -4717 2108 1840 522 0 0 0 chr6 90835752 90835810 -91579432 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 284 294 8 31 chr6 90835812 90835947 -91579295 - L1MEc LINE L1 -4904 1772 1516 342 288 197 0 chr6 90835948 90836080 -91579162 - MER5A DNA MER1_type -6 183 26 515 301 54 56 chr6 90836097 90836649 -91578593 - L1MEc LINE L1 -4996 1638 1088 1563 316 59 20 chr6 90837015 90837559 -91577683 + ERVL LTR ERVL 2048 2647 -3007 4458 162 39 30 chr6 90837559 90838417 -91576825 - MER6 DNA MER2_type 0 865 1 1563 316 59 20 chr6 90838417 90838715 -91576527 + ERVL LTR ERVL 2647 2932 -2722 807 348 105 26 chr6 90838784 90839517 -91575725 + ERVL LTR ERVL 3031 3821 -1833 715 331 87 18 chr6 90839580 90840075 -91575167 + ERVL LTR ERVL 3969 4497 -988 499 331 84 22 chr6 90840148 90840471 -91574771 + ERVL LTR ERVL 4596 4938 -716 265 319 118 4 chr6 90840512 90840741 -91574501 + ERVL LTR ERVL 5042 5296 -468 1328 263 93 28 chr6 90841140 90841891 -91573351 - L1MEd LINE L1 -5091 1028 177 333 47 0 0 chr6 90841891 90841934 -91573308 + (CA)n Simple_repeat Simple_repeat 2 44 0 1328 263 93 28 chr6 90841934 90842121 -91573121 - L1MEd LINE L1 -5942 177 3 209 222 0 0 chr6 90844365 90844410 -91570832 + T-rich Low_complexity Low_complexity 1 45 0 2054 130 74 79 chr6 90845104 90845534 -91569708 + MSTA LTR MaLR 1 428 0 900 125 14 35 chr6 90846873 90847017 -91568225 - FLAM_C SINE Alu 0 143 3 583 285 70 20 chr6 90847359 90847559 -91567683 - MIR SINE MIR -7 255 46 195 293 17 0 chr6 90848443 90848501 -91566741 + L2 LINE L2 3211 3269 -3 458 314 91 56 chr6 90848535 90848787 -91566455 - MIR SINE MIR 0 262 2 676 224 31 19 chr6 90848970 90849131 -91566111 + MER63 DNA MER1_type 1 789 -47 2490 113 8 26 chr6 90849281 90849662 -91565580 + THE1C LTR MaLR 2 375 0 856 178 54 38 chr6 90849737 90849922 -91565320 + MER5A DNA MER1_type 1 188 -1 243 240 0 0 chr6 90850359 90850409 -91564833 - MER5A DNA MER1_type -22 167 118 1315 202 12 28 chr6 90850432 90850759 -91564483 + MER31B LTR ERV1 1 322 -144 2056 164 42 31 chr6 90850760 90851298 -91563944 + MLT2A2 LTR ERVL 1 554 0 526 188 146 0 chr6 90851298 90851442 -91563800 + MER31A LTR ERV1 321 485 0 641 135 81 0 chr6 90851445 90851556 -91563686 - MER5A DNA MER1_type -69 120 1 950 271 87 51 chr6 90852333 90852805 -91562437 - L2 LINE L2 -1 3312 2824 2922 87 19 9 chr6 90852919 90853346 -91561896 - MLT2A1 LTR ERVL 0 444 14 732 195 5 87 chr6 90853362 90853557 -91561685 - MER58A DNA MER1_type -45 179 1 314 249 86 66 chr6 90853722 90853979 -91561263 + L3b LINE CR1 1148 1409 -174 421 252 13 143 chr6 90854167 90854397 -91560845 - MIR SINE MIR 0 262 63 358 267 171 28 chr6 90854716 90854933 -91560309 - L1MEd LINE L1 -5295 824 577 1741 232 65 19 chr6 90855197 90855709 -91559533 + MER77 LTR ERV1 64 598 -7 297 314 17 59 chr6 90856093 90856211 -91559031 + MIR SINE MIR 21 133 -75 1535 236 90 4 chr6 90856229 90856843 -91558399 + MER20B DNA MER1_type 1 709 -74 284 140 0 0 chr6 90856852 90856902 -91558340 - L1MA7 LINE L1 -233 6058 6009 2021 148 3 10 chr6 90856968 90857271 -91557971 - AluSx SINE Alu -11 301 1 1004 118 0 0 chr6 90857271 90857406 -91557836 - AluSq/x SINE Alu -177 135 1 592 176 97 12 chr6 90857408 90857573 -91557669 + L1MA7 LINE L1 6102 6280 -11 21 0 0 0 chr6 90857573 90857594 -91557648 + AT_rich Low_complexity Low_complexity 1 21 0 1572 217 6 14 chr6 90858374 90858733 -91556509 - MLT1A1 LTR MaLR 0 365 10 554 318 84 17 chr6 90859335 90859574 -91555668 + MIR SINE MIR 6 260 -2 247 361 46 0 chr6 90861027 90861135 -91554107 - L2 LINE L2 -4 3268 3156 626 236 192 19 chr6 90863039 90863247 -91551995 - MIR SINE MIR -5 257 14 2085 136 30 12 chr6 90863815 90864146 -91551096 - MER1B DNA MER1_type 0 337 1 1740 114 32 82 chr6 90864645 90864960 -91550282 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr6 90865012 90865035 -91550207 + (T)n Simple_repeat Simple_repeat 1 23 0 2210 116 0 10 chr6 90865049 90865360 -91549882 + AluSx SINE Alu 1 308 -4 512 300 100 25 chr6 90867237 90867477 -91547765 + L2 LINE L2 3055 3312 -1 953 204 46 32 chr6 90868810 90869026 -91546216 + MER20 DNA MER1_type 1 219 0 1975 117 46 3 chr6 90869366 90869649 -91545593 + AluSq SINE Alu 1 295 -18 225 144 86 152 chr6 90869796 90869905 -91545337 + MIR SINE MIR 18 117 -106 221 158 0 0 chr6 90870122 90870160 -91545082 - L2 LINE L2 -2 3270 3233 2643 109 27 59 chr6 90871775 90872250 -91542992 + LTR46 LTR ERV1 1 460 0 251 328 107 23 chr6 90872367 90872498 -91542744 - L3 LINE CR1 -25 1552 1411 1951 144 7 13 chr6 90872649 90872954 -91542288 + AluSx SINE Alu 1 303 -9 723 186 84 18 chr6 90872981 90873148 -91542094 + MER20 DNA MER1_type 2 179 -40 379 301 60 44 chr6 90873238 90873421 -91541821 - MIR SINE MIR -66 196 11 22 0 0 0 chr6 90874020 90874042 -91541200 + AT_rich Low_complexity Low_complexity 1 22 0 2266 103 3 0 chr6 90874359 90874661 -91540581 - AluSg SINE Alu -7 303 1 2234 104 0 7 chr6 90874931 90875228 -91540014 + AluSx SINE Alu 1 295 -17 204 159 0 23 chr6 90875279 90875323 -91539919 + A-rich Low_complexity Low_complexity 6 48 0 7142 49 6 0 chr6 90875486 90876457 -91538785 + L1PA7 LINE L1 5174 6149 -5 237 248 76 48 chr6 90878627 90878732 -91536510 - L1ME4a LINE L1 -33 6088 5981 745 247 62 0 chr6 90878996 90879174 -91536068 + MER5A DNA MER1_type 1 189 0 383 294 118 7 chr6 90879174 90879310 -91535932 - MIR3 SINE MIR -48 160 10 2708 181 75 7 chr6 90879767 90880376 -91534866 + L1MD2 LINE L1 5490 6140 -219 244 303 14 48 chr6 90880459 90880604 -91534638 - MIR SINE MIR -49 213 74 791 147 16 0 chr6 90880777 90880906 -91534336 - FLAM_C SINE Alu -1 132 2 1227 155 14 0 chr6 90881762 90881969 -91533273 - MER6B DNA MER2_type 0 210 1 185 318 91 0 chr6 90882050 90882116 -91533126 + MIR SINE MIR 20 91 -171 2710 163 10 2 chr6 90882764 90883249 -91531993 + Tigger1 DNA MER2_type 1 489 -1929 1041 229 76 47 chr6 90883459 90883944 -91531298 - L1MC5 LINE L1 -49 7912 7414 859 173 22 127 chr6 90883942 90884266 -91530976 - L1MC5 LINE L1 -978 6983 6694 * 2753 212 56 18 chr6 90885166 90885898 -91529344 + L1ME2 LINE L1 5325 6084 -80 717 149 177 0 chr6 90885912 90886053 -91529189 + MER20 DNA MER1_type 33 198 -21 686 115 62 0 chr6 90886053 90886166 -91529076 + L1PB3 LINE L1 6035 6154 0 202 176 0 98 chr6 90887914 90887965 -91527277 + L2 LINE L2 3225 3270 -2 243 0 0 0 chr6 90888819 90888846 -91526396 + (A)n Simple_repeat Simple_repeat 1 27 0 399 377 76 14 chr6 90890686 90890909 -91524333 + MIR SINE MIR 13 249 -13 240 35 0 0 chr6 90891356 90891385 -91523857 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 341 307 10 20 chr6 90891633 90891734 -91523508 - MIR SINE MIR -67 141 42 225 252 204 10 chr6 90893672 90893775 -91521467 - MIR SINE MIR -12 250 128 210 191 0 0 chr6 90894831 90894873 -91520369 + GA-rich Low_complexity Low_complexity 1 42 0 3014 148 24 34 chr6 90894888 90895478 -91519764 + LTR60 LTR ERV1 1 584 -2 231 146 124 34 chr6 90895639 90895728 -91519514 + LTR43 LTR ERV1 491 587 -15 181 53 79 0 chr6 90895893 90895931 -91519311 + A-rich Low_complexity Low_complexity 2 42 0 2320 135 104 12 chr6 90896252 90896674 -91518568 + LOR1b LTR ERV1 1 461 0 2128 90 28 10 chr6 90896946 90897266 -91517976 + AluY SINE Alu 1 311 0 359 273 105 41 chr6 90898159 90898331 -91516911 + MIR SINE MIR 72 254 -8 207 0 0 0 chr6 90898457 90898480 -91516762 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 263 246 56 42 chr6 90898498 90898571 -91516671 + L1MEd LINE L1 4 74 -6045 1659 166 10 42 chr6 90898571 90898878 -91516364 - AluJb SINE Alu -11 301 5 263 246 56 42 chr6 90898878 90898946 -91516296 + L1MEd LINE L1 74 147 -5972 319 268 61 136 chr6 90899037 90899347 -91515895 + L1MEd LINE L1 246 532 -5587 615 304 60 39 chr6 90899739 90900085 -91515157 + L1M4 LINE L1 3340 3702 -2444 6867 57 10 7 chr6 90900085 90901368 -91513874 + L1PA7 LINE L1 4864 6150 -4 615 304 60 39 chr6 90901368 90901558 -91513684 + L1M4 LINE L1 3702 3887 -2259 345 345 73 18 chr6 90902961 90903181 -91512061 + LTR67 LTR ERVL 11 242 -315 329 172 58 23 chr6 90903319 90903406 -91511836 + LTR67 LTR ERVL 466 555 -2 22 0 0 0 chr6 90903473 90903495 -91511747 + AT_rich Low_complexity Low_complexity 1 22 0 269 270 0 67 chr6 90903560 90903649 -91511593 - MIR SINE MIR -161 101 19 3353 186 34 18 chr6 90903837 90905468 -91509774 - L1MC1 LINE L1 -399 5934 4199 2126 164 10 8 chr6 90905469 90905859 -91509383 + L1MC1 LINE L1 5925 6315 -18 1319 153 51 0 chr6 90907383 90907619 -91507623 - L1MC1 LINE L1 -5 6328 6081 2211 144 30 11 chr6 90907621 90907989 -91507253 + THE1C LTR MaLR 1 375 0 7559 144 68 28 chr6 90908005 90909507 -91505735 + THE1C-int LTR MaLR 19 1580 0 2548 103 19 8 chr6 90909508 90909878 -91505364 + THE1C LTR MaLR 2 375 0 336 120 0 0 chr6 90909878 90909928 -91505314 - L1MC1 LINE L1 -250 6083 6034 1987 152 32 29 chr6 90911611 90911985 -91503257 + THE1C LTR MaLR 1 375 0 523 218 103 118 chr6 90912427 90912575 -91502667 + L1MEd LINE L1 915 1064 -5055 522 83 0 0 chr6 90912575 90912647 -91502595 + (TA)n Simple_repeat Simple_repeat 2 73 0 523 218 103 118 chr6 90912647 90912706 -91502536 + L1MEd LINE L1 1064 1122 -4997 2510 149 9 21 chr6 90912706 90913136 -91502106 - MSTB LTR MaLR -1 425 1 523 218 103 118 chr6 90913136 90913275 -91501967 + L1MEd LINE L1 1122 1257 -4862 315 330 67 25 chr6 90913288 90913573 -91501669 + HAL1 LINE L1 1383 1679 -828 243 23 68 0 chr6 90915005 90915049 -91500193 + A-rich Low_complexity Low_complexity 4 50 0 231 286 79 0 chr6 90915905 90915968 -91499274 - MIR3 SINE MIR -48 160 93 331 245 98 133 chr6 90916444 90916587 -91498655 + MER5A DNA MER1_type 49 186 -3 950 144 0 88 chr6 90916593 90916774 -91498468 + FRAM SINE Alu 1 163 -13 182 328 109 16 chr6 90916953 90917017 -91498225 + L3b LINE CR1 1512 1581 -2 1520 127 35 176 chr6 90917091 90917494 -91497748 + Tigger3(Golem) DNA MER2_type 1 3026 -3 24 0 0 0 chr6 90918547 90918571 -91496671 + AT_rich Low_complexity Low_complexity 1 24 0 2021 125 31 0 chr6 90918625 90918913 -91496329 + AluSx SINE Alu 1 297 -15 25 95 0 0 chr6 90918954 90919028 -91496214 + AT_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr6 90919247 90919269 -91495973 + AT_rich Low_complexity Low_complexity 1 22 0 1789 151 73 25 chr6 90919278 90919636 -91495606 + THE1C LTR MaLR 1 375 0 8163 104 77 4 chr6 90919636 90920956 -91494286 + THE1C-int LTR MaLR 1 1417 -163 19071 153 23 23 chr6 90920973 90921045 -91494197 + L1MA3 LINE L1 62 132 -7592 1869 169 3 6 chr6 90921045 90921358 -91493884 + AluJb SINE Alu 1 312 0 19071 153 23 23 chr6 90921358 90925201 -91490041 + L1MA3 LINE L1 132 4085 -3639 207 0 0 0 chr6 90925201 90925224 -91490018 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 19071 153 23 23 chr6 90925224 90928176 -91487066 + L1MA3 LINE L1 4085 7034 -690 568 138 0 0 chr6 90928176 90928256 -91486986 + AluS SINE Alu 1 80 -232 4607 103 14 3 chr6 90928257 90928948 -91486294 + L1MA3 LINE L1 7026 7724 0 317 262 16 8 chr6 90929705 90929827 -91485415 - MER103 DNA DNA -10 156 34 764 285 64 0 chr6 90929855 90930090 -91485152 + MIR SINE MIR 12 261 -1 1688 176 14 0 chr6 90930123 90930402 -91484840 - AluJb SINE Alu -18 294 12 213 319 106 11 chr6 90930521 90930615 -91484627 + MIR3 SINE MIR 103 205 -3 1004 283 86 30 chr6 90931335 90931887 -91483355 - L2 LINE L2 -16 3297 2716 319 308 93 9 chr6 90933488 90933595 -91481647 + MIR3 SINE MIR 62 177 -31 1977 132 0 3 chr6 90934535 90934864 -91480378 + AluSx SINE Alu 1 328 0 333 250 142 0 chr6 90935434 90935554 -91479688 - MIR SINE MIR -2 260 124 460 305 0 30 chr6 90935787 90935918 -91479324 - MIR SINE MIR -57 151 25 23 78 0 0 chr6 90936043 90936094 -91479148 + AT_rich Low_complexity Low_complexity 1 51 0 533 320 31 16 chr6 90936405 90936661 -91478581 - MER34 LTR ERV1 -29 513 254 23 54 0 0 chr6 90936841 90936878 -91478364 + AT_rich Low_complexity Low_complexity 1 37 0 269 159 0 0 chr6 90937364 90937408 -91477834 + tRNA-Gln-CAA tRNA tRNA 32 75 0 243 0 0 0 chr6 90937408 90937435 -91477807 + (A)n Simple_repeat Simple_repeat 1 27 0 271 279 0 0 chr6 90937796 90937875 -91477367 - MER34 LTR ERV1 -463 79 1 599 328 45 8 chr6 90939019 90939266 -91475976 - MIR SINE MIR -5 257 2 1640 104 50 4 chr6 90939419 90939659 -91475583 + AluSp SINE Alu 51 301 -12 201 39 0 0 chr6 90939681 90939707 -91475535 + (TG)n Simple_repeat Simple_repeat 2 27 0 2950 134 18 7 chr6 90941068 90941516 -91473726 - MLT2A2 LTR ERVL 0 453 1 2316 83 7 3 chr6 90943002 90943303 -91471939 + AluSp SINE Alu 10 311 -2 1204 196 53 50 chr6 90943431 90943849 -91471393 - L1MC5 LINE L1 -44 7917 7499 1464 131 34 37 chr6 90943850 90944059 -91471183 + L1MB7 LINE L1 5899 6108 -76 2831 3 0 0 chr6 90944059 90944364 -91470878 + AluYa5 SINE Alu 1 305 -6 1464 131 34 37 chr6 90944364 90944422 -91470820 + L1MB7 LINE L1 6108 6165 -19 25 65 0 0 chr6 90944678 90944724 -91470518 + AT_rich Low_complexity Low_complexity 1 46 0 2141 170 98 25 chr6 90944841 90945329 -91469913 - L1MD2 LINE L1 -14 6345 5822 1258 194 39 60 chr6 90945330 90945613 -91469629 - AluJo SINE Alu -15 297 21 1107 164 22 43 chr6 90945634 90945866 -91469376 - L1MD2 LINE L1 -533 5826 5600 236 261 68 11 chr6 90945866 90945954 -91469288 - L1MD2 LINE L1 -979 5167 5075 398 349 77 22 chr6 90946171 90946535 -91468707 - L1MC/D LINE L1 -2081 5727 5344 197 65 32 0 chr6 90946907 90946938 -91468304 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 427 271 116 50 chr6 90946979 90947018 -91468224 + L1M4 LINE L1 4384 4419 -1727 1729 174 10 3 chr6 90947018 90947316 -91467926 + AluJb SINE Alu 1 300 -12 427 271 116 50 chr6 90947316 90947700 -91467542 + L1M4 LINE L1 4419 4835 -1311 234 130 43 22 chr6 90947741 90947833 -91467409 + (TATAA)n Simple_repeat Simple_repeat 5 98 0 26 64 0 0 chr6 90948033 90948080 -91467162 + AT_rich Low_complexity Low_complexity 1 47 0 2493 74 0 0 chr6 90948248 90948559 -91466683 + AluY SINE Alu 1 311 0 551 100 0 0 chr6 90948679 90948759 -91466483 - L1MB7 LINE L1 -254 5930 5851 826 131 0 58 chr6 90949277 90949414 -91465828 - FLAM_C SINE Alu -4 129 1 24 0 0 0 chr6 90949492 90949516 -91465726 + AT_rich Low_complexity Low_complexity 1 24 0 2624 101 70 149 chr6 90951418 90951990 -91463252 + MER1A DNA MER1_type 1 527 0 1262 167 114 52 chr6 90952010 90952334 -91462908 + MER2 DNA MER2_type 1 344 0 29 47 0 0 chr6 90952673 90952716 -91462526 + AT_rich Low_complexity Low_complexity 1 43 0 319 280 78 89 chr6 90952980 90953251 -91461991 + L1ME4a LINE L1 5837 6104 -17 22 35 0 0 chr6 90953388 90953417 -91461825 + AT_rich Low_complexity Low_complexity 1 29 0 2478 70 0 0 chr6 90954525 90954823 -91460419 + AluY SINE Alu 1 298 -13 728 167 97 22 chr6 90955235 90955462 -91459780 - Charlie1 DNA MER1_type -70 2691 2448 334 173 12 12 chr6 90956049 90956130 -91459112 + (TA)n Simple_repeat Simple_repeat 2 82 0 261 0 0 0 chr6 90956130 90956159 -91459083 + (CA)n Simple_repeat Simple_repeat 2 30 0 210 241 0 19 chr6 90956341 90956395 -91458847 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 2098 106 0 0 chr6 90956559 90956834 -91458408 + AluSq SINE Alu 29 303 -10 275 274 0 16 chr6 90958123 90958185 -91457057 + L2 LINE L2 3247 3307 -6 321 276 0 13 chr6 90958363 90958439 -91456803 - L3 LINE CR1 -76 1501 1427 212 226 75 75 chr6 90958455 90958561 -91456681 - L3 LINE CR1 -282 1295 1190 5035 163 44 3 chr6 90958581 90959918 -91455324 - L1PB4 LINE L1 -2 6154 4767 207 188 21 20 chr6 90960093 90960142 -91455100 - MIR SINE MIR -64 144 95 191 244 24 73 chr6 90960188 90960270 -91454972 + MIR SINE MIR 111 188 -74 24 0 0 0 chr6 90960533 90960557 -91454685 + AT_rich Low_complexity Low_complexity 1 24 0 2341 209 87 51 chr6 90961046 90961955 -91453287 - L1MC5 LINE L1 -49 7912 6971 1027 169 11 16 chr6 90961959 90962143 -91453099 - AluJ SINE Alu -10 302 120 2411 285 129 27 chr6 90962148 90963290 -91451952 - L1MC4a LINE L1 -817 6991 5642 222 37 0 0 chr6 90963290 90963317 -91451925 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2411 285 129 27 chr6 90963317 90963751 -91451491 - L1MC4a LINE L1 -2166 5642 5254 796 237 16 0 chr6 90963773 90963963 -91451279 - AluJ SINE Alu 0 312 120 803 127 15 22 chr6 90963992 90964126 -91451116 - AluJ SINE Alu -169 133 1 477 294 76 65 chr6 90964138 90964317 -91450925 - L1MC4a LINE L1 -940 5206 5030 2004 121 0 7 chr6 90964317 90964636 -91450606 - AluSc SINE Alu 0 317 1 477 294 76 65 chr6 90964636 90965168 -91450074 - L1MC4a LINE L1 -1116 5030 4481 2322 112 0 0 chr6 90965168 90965473 -91449769 + AluSg SINE Alu 4 308 -2 477 294 76 65 chr6 90965473 90965576 -91449666 - L1MC4a LINE L1 -1665 4481 4381 327 196 43 0 chr6 90965609 90965747 -91449495 + (TA)n Simple_repeat Simple_repeat 2 145 0 39 0 0 0 chr6 90965824 90965863 -91449379 + AT_rich Low_complexity Low_complexity 1 39 0 212 83 0 28 chr6 90965899 90965935 -91449307 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 866 110 0 133 chr6 90965938 90966111 -91449131 - AluJb SINE Alu -31 281 132 753 187 0 7 chr6 90966144 90966283 -91448959 - FLAM_C SINE Alu 0 143 6 421 247 60 28 chr6 90966291 90966473 -91448769 - L1MC4a LINE L1 -1854 4292 4105 1063 300 46 2 chr6 90966555 90966988 -91448254 + L1ME3A LINE L1 5494 5945 -225 23 33 0 0 chr6 90967000 90967030 -91448212 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr6 90967233 90967256 -91447986 + (CCTA)n Simple_repeat Simple_repeat 1 23 0 186 133 0 0 chr6 90967825 90967855 -91447387 + (A)n Simple_repeat Simple_repeat 1 30 0 833 223 57 14 chr6 90968447 90968658 -91446584 - MER58A DNA MER1_type -4 220 1 1701 211 128 24 chr6 90969068 90969161 -91446081 - MLT1F1 LTR MaLR -57 510 428 3114 108 4 23 chr6 90969161 90969250 -91445992 + MER4C LTR ERV1 1 90 -375 2140 133 0 0 chr6 90969250 90969552 -91445690 - AluSx SINE Alu -10 302 1 3114 108 4 23 chr6 90969552 90969936 -91445306 + MER4C LTR ERV1 90 465 0 1701 211 128 24 chr6 90969936 90970302 -91444940 - MLT1F1 LTR MaLR -139 428 3 2414 95 0 0 chr6 90971191 90971497 -91443745 - AluSx SINE Alu -6 306 1 217 391 11 0 chr6 90971914 90972001 -91443241 + L2 LINE L2 3181 3268 -45 300 27 0 0 chr6 90972096 90972133 -91443109 + (GA)n Simple_repeat Simple_repeat 1 37 0 1103 207 78 45 chr6 90972355 90972689 -91442553 + MER2 DNA MER2_type 1 345 0 310 268 134 32 chr6 90974300 90974457 -91440785 + L1ME4a LINE L1 5083 5255 -891 324 0 0 0 chr6 90974469 90974505 -91440737 + (CA)n Simple_repeat Simple_repeat 1 36 0 299 245 0 43 chr6 90974523 90974617 -91440625 + L1ME4a LINE L1 5327 5416 -705 2030 110 17 0 chr6 90974776 90975067 -91440175 + AluSx SINE Alu 1 296 -16 2153 160 191 125 chr6 90975101 90975300 -91439942 + L1MD3 LINE L1 6748 6932 -1063 279 0 0 0 chr6 90975300 90975331 -91439911 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2153 160 191 125 chr6 90975331 90975464 -91439778 + L1MD3 LINE L1 6932 7055 -940 435 213 21 21 chr6 90975464 90975558 -91439684 + MLT1F1 LTR MaLR 41 134 -433 2153 160 191 125 chr6 90975558 90976109 -91439133 + L1MD3 LINE L1 7055 7993 -2 240 287 153 13 chr6 90976143 90976293 -91438949 + L1ME4a LINE L1 5632 5802 -319 2383 91 0 0 chr6 90976412 90976719 -91438523 + AluY SINE Alu 3 309 -2 255 236 28 0 chr6 90976749 90976821 -91438421 + L1ME4a LINE L1 5937 6010 -111 219 306 69 14 chr6 90977814 90977886 -91437356 + L2 LINE L2 1110 1185 -2129 30236 73 18 3 chr6 90978026 90981917 -91433325 - HERVL LTR ERVL -77 5577 1628 1817 255 114 62 chr6 90982408 90982693 -91432549 - HAL1 LINE L1 -229 2278 2009 1661 135 176 19 chr6 90982693 90983063 -91432179 + MSTA LTR MaLR 1 428 0 1817 255 114 62 chr6 90983063 90983125 -91432117 - HAL1 LINE L1 -498 2009 1952 1974 158 7 0 chr6 90983125 90983422 -91431820 + AluJb SINE Alu 1 299 -13 1817 255 114 62 chr6 90983422 90984091 -91431151 - HAL1 LINE L1 -555 1952 1208 558 287 0 0 chr6 90984102 90984217 -91431025 - L2 LINE L2 0 3313 3199 2379 105 0 0 chr6 90984242 90984548 -91430694 - AluSx SINE Alu -6 306 1 259 277 146 48 chr6 90984556 90984762 -91430480 - L1ME LINE L1 -513 5608 5383 2176 193 33 22 chr6 90984961 90985418 -91429824 + ERVL LTR ERVL 1527 1988 -3776 1675 172 108 0 chr6 90985949 90986263 -91428979 + MER7A DNA MER2_type 1 346 0 1511 194 18 75 chr6 90986843 90987075 -91428167 - MLT1A1 LTR MaLR 0 365 162 2218 107 0 0 chr6 90987075 90987373 -91427869 - AluSx SINE Alu -14 298 1 1511 194 18 75 chr6 90987373 90987527 -91427715 - MLT1A1 LTR MaLR -203 162 1 261 128 21 0 chr6 90987964 90988011 -91427231 - L3 LINE CR1 -183 1394 1347 1471 311 175 28 chr6 90988393 90988631 -91426611 - L2 LINE L2 0 3313 3111 2270 100 3 0 chr6 90988631 90988932 -91426310 + AluSp SINE Alu 1 302 -11 1471 311 175 28 chr6 90988932 90990057 -91425185 - L2 LINE L2 -202 3111 1718 2515 81 3 0 chr6 90990090 90990400 -91424842 + AluSx SINE Alu 1 311 -1 2551 190 25 23 chr6 90990420 90990984 -91424258 - L1ME2 LINE L1 -213 5951 5387 2421 101 31 0 chr6 90992219 90992574 -91422668 + L1PB1 LINE L1 5785 6150 -1 3866 188 26 13 chr6 90993105 90993881 -91421361 - ERVL LTR ERVL -3452 2312 1527 557 316 90 50 chr6 90994080 90994294 -91420948 + L1ME LINE L1 5383 5620 -501 2338 105 0 0 chr6 90994294 90994599 -91420643 + AluSx SINE Alu 1 305 -7 557 316 90 50 chr6 90994599 90994760 -91420482 + L1ME LINE L1 5620 5773 -348 1540 172 45 28 chr6 90994861 90995152 -91420090 + AluJo SINE Alu 3 298 -14 1230 172 109 0 chr6 90995381 90995628 -91419614 - AluJo SINE Alu 0 307 37 25 0 0 0 chr6 90995664 90995689 -91419553 + AT_rich Low_complexity Low_complexity 1 25 0 2497 74 3 0 chr6 90995850 90996159 -91419083 + AluSg SINE Alu 1 310 0 745 279 85 25 chr6 90996183 90996791 -91418451 - L1MEd LINE L1 -4718 1678 1022 1251 300 64 37 chr6 90997373 90998595 -91416647 - L1ME LINE L1 -4584 1498 394 270 98 66 82 chr6 90998860 90998921 -91416321 - MSTB LTR MaLR -11 415 356 2648 109 0 8 chr6 90998922 90999289 -91415953 + THE1B LTR MaLR 1 364 0 6850 138 30 40 chr6 90999291 90999703 -91415539 + THE1B-int LTR MaLR 3 418 -1162 1989 154 3 3 chr6 90999703 91000002 -91415240 - AluSx SINE Alu -13 299 1 6850 138 30 40 chr6 91000002 91001350 -91413892 + THE1B-int LTR MaLR 418 1580 0 2506 114 8 0 chr6 91001350 91001711 -91413531 + THE1B LTR MaLR 1 364 0 1344 205 53 19 chr6 91001711 91002085 -91413157 - MSTB LTR MaLR -67 359 1 2472 135 31 17 chr6 91002086 91002508 -91412734 + MSTA LTR MaLR 1 428 0 1598 251 115 62 chr6 91003174 91003442 -91411800 - HAL1 LINE L1 -246 2261 2009 1848 132 170 14 chr6 91003442 91003812 -91411430 + MSTA LTR MaLR 1 428 0 1598 251 115 62 chr6 91003812 91003874 -91411368 - HAL1 LINE L1 -498 2009 1952 1998 158 7 0 chr6 91003874 91004171 -91411071 + AluJb SINE Alu 1 299 -13 1598 251 115 62 chr6 91004171 91004840 -91410402 - HAL1 LINE L1 -555 1952 1208 558 287 0 0 chr6 91004851 91004966 -91410276 - L2 LINE L2 0 3313 3199 2328 101 0 13 chr6 91004981 91005297 -91409945 - AluSx SINE Alu 0 312 1 323 264 176 53 chr6 91005300 91005675 -91409567 - HAL1 LINE L1 -1327 1180 760 1166 162 0 0 chr6 91005697 91005870 -91409372 - FAM SINE Alu -1 174 2 329 325 90 42 chr6 91006041 91006420 -91408822 - HAL1 LINE L1 -2108 399 3 225 211 0 0 chr6 91007026 91007078 -91408164 + A-rich Low_complexity Low_complexity 1 52 0 182 343 56 37 chr6 91007779 91007887 -91407355 - MIR SINE MIR -72 136 27 381 209 55 80 chr6 91008519 91008593 -91406649 - MER112 DNA MER1_type -7 253 179 2026 109 7 0 chr6 91008593 91008910 -91406332 - AluSg1 SINE Alu 0 319 1 381 209 55 80 chr6 91008910 91008997 -91406245 - MER112 DNA MER1_type -81 179 95 234 0 0 0 chr6 91009153 91009179 -91406063 + (TC)n Simple_repeat Simple_repeat 2 27 0 232 228 41 41 chr6 91010155 91010278 -91404964 + L1MC5 LINE L1 7557 7679 -282 2227 87 3 3 chr6 91010692 91010981 -91404261 - AluSc SINE Alu -20 289 1 35 88 0 0 chr6 91012099 91012190 -91403052 + AT_rich Low_complexity Low_complexity 1 91 0 362 250 73 15 chr6 91013548 91013684 -91401558 - L1ME4a LINE L1 0 6121 5978 310 276 69 38 chr6 91013793 91014054 -91401188 - L1ME4a LINE L1 -315 5806 5538 2086 196 105 10 chr6 91014410 91014925 -91400317 - L1MD3 LINE L1 -2 7993 7430 243 226 206 29 chr6 91015074 91015176 -91400066 + L3 LINE CR1 1263 1382 -195 280 336 112 15 chr6 91015249 91015383 -91399859 - L2 LINE L2 -4 3268 3122 267 290 40 30 chr6 91015643 91015743 -91399499 - L2 LINE L2 -226 3046 2946 297 369 10 0 chr6 91015744 91015847 -91399395 + L2 LINE L2 3168 3271 -1 380 255 41 0 chr6 91016469 91016567 -91398675 - MIR SINE MIR -66 196 95 2525 46 7 0 chr6 91016571 91016876 -91398366 + AluY SINE Alu 1 307 -4 205 338 72 14 chr6 91016967 91017106 -91398136 - L2 LINE L2 -467 2847 2701 21 0 0 0 chr6 91018674 91018695 -91396547 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 91019007 91019030 -91396212 + AT_rich Low_complexity Low_complexity 1 23 0 393 285 65 16 chr6 91019148 91019271 -91395971 - MIR3 SINE MIR -46 162 34 200 319 174 22 chr6 91019901 91020039 -91395203 - MIR SINE MIR -57 205 47 221 271 0 29 chr6 91020721 91020791 -91394451 - L2 LINE L2 0 3313 3246 931 240 77 5 chr6 91020825 91021046 -91394196 - MIR SINE MIR -3 259 23 182 341 146 0 chr6 91021094 91021176 -91394066 - L2 LINE L2 -55 3217 3124 291 317 100 43 chr6 91021426 91021795 -91393447 - L2 LINE L2 -438 2876 2487 777 102 88 7 chr6 91021826 91021963 -91393279 - MER30 DNA MER1_type -30 200 53 225 289 53 35 chr6 91021990 91022104 -91393138 - L2 LINE L2 -836 2478 2363 2272 96 0 0 chr6 91023426 91023719 -91391523 - AluSg1 SINE Alu -16 293 1 250 250 0 56 chr6 91024659 91024731 -91390511 - L2 LINE L2 0 3313 3246 22 0 0 0 chr6 91024912 91024934 -91390308 + AT_rich Low_complexity Low_complexity 1 22 0 953 250 161 18 chr6 91025893 91026229 -91389013 + L2 LINE L2 2930 3313 0 348 100 0 0 chr6 91026328 91026378 -91388864 + L1MC1 LINE L1 6245 6294 -39 277 239 30 14 chr6 91026404 91026499 -91388743 - MIR SINE MIR -77 131 35 790 193 55 69 chr6 91027731 91027868 -91387374 - MER58C DNA MER1_type -2205 215 81 1660 164 23 29 chr6 91027868 91028178 -91387064 + AluJo SINE Alu 1 308 -4 790 193 55 69 chr6 91028178 91028258 -91386984 - MER58C DNA MER1_type -2339 81 1 324 85 102 0 chr6 91028712 91028771 -91386471 - MLT1A2 LTR MaLR 0 374 310 * 974 144 41 36 chr6 91028767 91028961 -91386281 - MLT1A2 LTR MaLR -179 195 1 1470 240 137 28 chr6 91029046 91030146 -91385096 + L1MC4a LINE L1 6460 7670 -168 346 257 0 0 chr6 91030305 91030379 -91384863 + L2 LINE L2 2730 2803 -511 393 224 0 104 chr6 91030473 91030607 -91384635 - MER63 DNA MER1_type -311 751 6 351 320 105 60 chr6 91030629 91031029 -91384213 + L2 LINE L2 2896 3313 0 647 211 176 0 chr6 91031117 91031321 -91383921 - MSTB2 LTR MaLR -217 240 1 21 71 0 0 chr6 91031339 91031381 -91383861 + AT_rich Low_complexity Low_complexity 1 42 0 2640 209 45 26 chr6 91031552 91031901 -91383341 + L1ME2 LINE L1 4843 5184 -980 2134 135 3 6 chr6 91031901 91032213 -91383029 + AluJb SINE Alu 1 311 -1 2640 209 45 26 chr6 91032213 91032963 -91382279 + L1ME2 LINE L1 5184 5951 -213 2288 76 3 13 chr6 91032984 91033285 -91381957 - AluSc SINE Alu -1 308 11 411 284 184 0 chr6 91034096 91034237 -91381005 - MER5A DNA MER1_type 0 189 23 1532 77 227 12 chr6 91035395 91035642 -91379600 - AluSg1 SINE Alu -9 300 1 265 308 34 68 chr6 91036109 91036255 -91378987 + MIR3 SINE MIR 44 184 -24 314 321 84 79 chr6 91036409 91036989 -91378253 - L1M2 LINE L1 -5707 1142 560 218 264 42 28 chr6 91037862 91037934 -91377308 + MIR SINE MIR 20 92 -116 333 173 120 73 chr6 91038054 91038204 -91377038 + MER103 DNA DNA 2 158 -8 24 53 0 0 chr6 91038383 91038421 -91376821 + AT_rich Low_complexity Low_complexity 1 38 0 434 232 16 16 chr6 91039214 91039339 -91375903 - L1ME2 LINE L1 -9 6155 6031 203 273 127 0 chr6 91039533 91039588 -91375654 + L2 LINE L2 3211 3272 0 1284 245 73 20 chr6 91039594 91039991 -91375251 + MER113 DNA MER1_type? 2 431 -90 2016 125 17 3 chr6 91039991 91040280 -91374962 - AluSx SINE Alu -19 293 1 1284 245 73 20 chr6 91040280 91040375 -91374867 + MER113 DNA MER1_type? 431 520 -1 2194 115 0 16 chr6 91041847 91042159 -91373083 - AluSx SINE Alu -5 307 1 1237 251 180 26 chr6 91042378 91042833 -91372409 - MLT1F LTR MaLR -6 536 12 215 0 0 62 chr6 91043059 91043091 -91372151 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1532 184 0 8 chr6 91043219 91043486 -91371756 + MER47A DNA MER2_type 1 265 -101 399 100 50 0 chr6 91043500 91043560 -91371682 + L1MB2 LINE L1 6077 6139 -32 434 189 0 0 chr6 91043560 91043634 -91371608 + AluJ/FLAM SINE Alu 1 74 -238 371 210 62 0 chr6 91043649 91043730 -91371512 + MER47A DNA MER2_type 281 366 0 306 236 121 21 chr6 91043855 91043995 -91371247 - L1MC4a LINE L1 -1866 5942 5789 289 330 122 37 chr6 91044009 91044279 -91370963 - L2 LINE L2 -16 3297 3005 4358 175 58 29 chr6 91044316 91045013 -91370229 + L1MB2 LINE L1 4689 5364 -807 1930 100 46 4 chr6 91045013 91045294 -91369948 + AluSc SINE Alu 1 293 -16 4358 175 58 29 chr6 91045294 91045991 -91369251 + L1MB2 LINE L1 5364 6135 -36 769 141 33 0 chr6 91045991 91046112 -91369130 + FLAM_C SINE Alu 1 125 -8 4358 175 58 29 chr6 91046112 91046150 -91369092 + L1MB2 LINE L1 6135 6170 -1 1692 159 17 40 chr6 91046158 91046460 -91368782 + AluJo SINE Alu 1 295 -17 1115 85 171 20 chr6 91046539 91046738 -91368504 + MER30 DNA MER1_type 1 229 -1 180 363 62 7 chr6 91048675 91048821 -91366421 - L3 LINE CR1 -799 778 625 5138 140 59 25 chr6 91049579 91049899 -91365343 + L1MA8 LINE L1 4547 4854 -1437 1792 134 62 0 chr6 91049899 91050174 -91365068 - AluSx SINE Alu -20 292 1 5138 140 59 25 chr6 91050174 91051549 -91363693 + L1MA8 LINE L1 4854 6286 -5 2268 101 0 0 chr6 91051578 91051875 -91363367 - AluSx SINE Alu -15 297 1 505 266 146 10 chr6 91052214 91052413 -91362829 + MIR SINE MIR 11 236 -26 1615 168 81 3 chr6 91052897 91053218 -91362024 + MER7A DNA MER2_type 2 345 -1 1928 118 7 35 chr6 91053337 91053658 -91361584 - AluSx SINE Alu 0 313 1 502 371 74 20 chr6 91053986 91054377 -91360865 - L2 LINE L2 -1 3312 2901 534 16 0 0 chr6 91054542 91054605 -91360637 + (TTATG)n Simple_repeat Simple_repeat 2 64 0 230 71 0 0 chr6 91054605 91054633 -91360609 - Alu SINE Alu -17 282 255 213 281 229 21 chr6 91054634 91054730 -91360512 - L2 LINE L2 -568 2746 2631 250 248 176 32 chr6 91054769 91054894 -91360348 - L2 LINE L2 -1047 2267 2125 2118 137 42 47 chr6 91054896 91055298 -91359944 - Tigger2a DNA MER2_type -34 400 1 1363 328 120 29 chr6 91055299 91056250 -91358992 - L2 LINE L2 -1189 2125 1089 713 280 101 9 chr6 91056312 91056530 -91358712 + MIR SINE MIR 3 240 -22 264 30 0 0 chr6 91056613 91056646 -91358596 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2196 86 3 7 chr6 91056649 91056939 -91358303 - AluY SINE Alu -22 289 1 193 250 0 0 chr6 91056939 91056975 -91358267 - L2 LINE L2 -562 2752 2717 233 303 86 40 chr6 91056975 91057127 -91358115 - L2 LINE L2 -2960 354 196 2249 100 3 0 chr6 91057187 91057487 -91357755 - AluSc SINE Alu -8 301 1 23 0 0 0 chr6 91058424 91058447 -91356795 + AT_rich Low_complexity Low_complexity 1 23 0 416 179 3 154 chr6 91058578 91058701 -91356541 + L1MA10 LINE L1 6030 6293 -41 580 291 68 42 chr6 91058899 91059136 -91356106 - MIR SINE MIR 0 262 20 387 182 57 0 chr6 91059318 91059406 -91355836 + MER5C DNA MER1_type 32 124 -200 351 123 185 49 chr6 91059433 91059514 -91355728 + MER5C DNA MER1_type 233 324 0 1827 117 86 72 chr6 91059701 91060060 -91355182 - THE1B LTR MaLR 0 364 1 793 169 14 14 chr6 91061333 91061475 -91353767 - Tigger7 DNA MER2_type -7 2480 2339 1455 208 88 10 chr6 91061480 91061788 -91353454 - Tigger7 DNA MER2_type -395 338 7 221 204 184 68 chr6 91061923 91062026 -91353216 + L2 LINE L2 3194 3308 -5 3515 181 55 43 chr6 91062361 91062393 -91352849 - L1MB8 LINE L1 -37 6141 6111 2117 97 0 26 chr6 91062393 91062701 -91352541 + AluSg SINE Alu 1 300 -10 3515 181 55 43 chr6 91062701 91063692 -91351550 - L1MB8 LINE L1 -67 6111 5101 2161 127 0 0 chr6 91063692 91064000 -91351242 - AluSx SINE Alu -4 308 1 3515 181 55 43 chr6 91064000 91064238 -91351004 - L1MB8 LINE L1 -1077 5101 4867 1855 218 136 18 chr6 91064398 91064873 -91350369 - MLT1F1 LTR MaLR -8 559 21 1255 191 94 18 chr6 91064873 91065150 -91350092 - AluJo SINE Alu -14 298 1 1855 218 136 18 chr6 91065150 91065174 -91350068 - MLT1F1 LTR MaLR -546 21 1 180 163 23 70 chr6 91065508 91065551 -91349691 - L3 LINE CR1 -95 1482 1442 1633 156 52 0 chr6 91066605 91066952 -91348290 - AluJo SINE Alu 0 361 1 3218 174 75 111 chr6 91067036 91067974 -91347268 - MER21A LTR ERV1 -27 904 1 261 0 0 0 chr6 91068448 91068477 -91346765 + (TG)n Simple_repeat Simple_repeat 2 30 0 355 161 12 12 chr6 91068477 91068558 -91346684 + (TA)n Simple_repeat Simple_repeat 1 81 0 723 172 97 22 chr6 91069145 91069372 -91345870 + Charlie1 DNA MER1_type 2448 2691 -70 2386 60 0 3 chr6 91069784 91070083 -91345159 - AluY SINE Alu -13 298 1 475 335 92 17 chr6 91070265 91070504 -91344738 + L2 LINE L2 1950 2206 -1108 812 223 67 18 chr6 91070523 91070747 -91344495 - L1MA9 LINE L1 -38 6274 6040 488 323 99 19 chr6 91070782 91071045 -91344197 + L2 LINE L2 2211 2494 -820 560 291 69 0 chr6 91071123 91071298 -91343944 + MIR SINE MIR 76 262 0 558 296 42 96 chr6 91071284 91071690 -91343552 + L2 LINE L2 2514 2897 -417 * 241 322 83 25 chr6 91071718 91071839 -91343403 + L2 LINE L2 2991 3118 -195 23 0 0 0 chr6 91071859 91071882 -91343360 + AT_rich Low_complexity Low_complexity 1 23 0 2355 91 6 3 chr6 91071923 91072254 -91342988 + L1PB1 LINE L1 5812 6143 -8 558 237 107 22 chr6 91072257 91072481 -91342761 - L1MEd LINE L1 -4886 1233 991 645 249 10 19 chr6 91072506 91072711 -91342531 - L1ME2 LINE L1 0 6164 5969 340 176 83 28 chr6 91072760 91072868 -91342374 - L1M4 LINE L1 -954 5192 5079 445 313 108 11 chr6 91072874 91073142 -91342100 - L1M4 LINE L1 -1797 4349 4056 290 243 0 0 chr6 91073146 91073216 -91342026 - L1M4 LINE L1 -2302 3844 3775 797 259 77 14 chr6 91073365 91073716 -91341526 - L1M4 LINE L1 -2623 3523 3151 482 216 73 149 chr6 91073720 91074021 -91341221 + L2 LINE L2 3035 3312 -1 21 0 0 0 chr6 91074051 91074072 -91341170 + AT_rich Low_complexity Low_complexity 1 21 0 2382 92 7 0 chr6 91074124 91074428 -91340814 - AluSg SINE Alu -2 308 3 520 339 89 53 chr6 91075019 91075295 -91339947 - L2 LINE L2 -976 2338 2073 2041 140 7 0 chr6 91075295 91075603 -91339639 + AluSx SINE Alu 1 310 -2 520 339 89 53 chr6 91075603 91076100 -91339142 - L2 LINE L2 -1241 2073 1537 507 334 37 90 chr6 91076239 91076673 -91338569 - L2 LINE L2 -18 3254 2844 1608 196 7 0 chr6 91076955 91077246 -91337996 - AluJb SINE Alu -19 293 1 266 159 0 0 chr6 91077269 91077313 -91337929 + FRAM/FAM SINE Alu 32 75 -91 214 347 80 60 chr6 91077317 91077568 -91337674 - L2 LINE L2 -858 2456 2201 338 263 197 42 chr6 91078029 91078242 -91337000 + MIR SINE MIR 3 248 -14 493 281 55 0 chr6 91078621 91078749 -91336493 - MIR SINE MIR -108 154 20 269 269 204 37 chr6 91079105 91079213 -91336029 - L2 LINE L2 -6 3307 3182 25 0 0 0 chr6 91079223 91079248 -91335994 + AT_rich Low_complexity Low_complexity 1 25 0 270 108 0 0 chr6 91079252 91079289 -91335953 - AluJ/FLAM SINE Alu -223 79 43 1056 226 27 15 chr6 91079626 91079887 -91335355 - L1ME1 LINE L1 -5 6161 5898 707 117 0 0 chr6 91079915 91080018 -91335224 - AluSp SINE Alu -210 103 1 2068 166 36 20 chr6 91080030 91080471 -91334771 - L1ME1 LINE L1 -418 5766 5319 842 204 23 42 chr6 91080580 91080796 -91334446 - L1ME1 LINE L1 -894 5252 5041 317 180 16 0 chr6 91080797 91080858 -91334384 - L1ME LINE L1 -563 5603 5542 781 278 139 41 chr6 91080994 91081292 -91333950 + L1MC4a LINE L1 5263 5530 -2278 1887 135 0 4 chr6 91081292 91081566 -91333676 - AluSg SINE Alu -32 278 6 781 278 139 41 chr6 91081566 91081871 -91333371 + L1MC4a LINE L1 5530 5925 -1883 30 89 0 0 chr6 91082976 91083055 -91332187 + AT_rich Low_complexity Low_complexity 1 79 0 1146 134 60 53 chr6 91084067 91084249 -91330993 - L1MA8 LINE L1 0 6291 6105 2367 53 3 10 chr6 91084249 91084551 -91330691 + AluY SINE Alu 1 300 -11 1146 134 60 53 chr6 91084551 91084652 -91330590 - L1MA8 LINE L1 -186 6105 6006 376 245 0 11 chr6 91084760 91084854 -91330388 - Charlie1a DNA MER1_type 0 1455 1363 3455 190 83 109 chr6 91084854 91085336 -91329906 - Charlie1a DNA MER1_type -1644 1117 624 2143 110 0 13 chr6 91085336 91085636 -91329606 + AluSx SINE Alu 1 296 -16 3455 190 83 109 chr6 91085636 91085928 -91329314 - Charlie1a DNA MER1_type -2137 624 326 2036 117 0 0 chr6 91085928 91086258 -91328984 - AluY SINE Alu 0 330 1 3455 190 83 109 chr6 91086258 91086625 -91328617 - Charlie1a DNA MER1_type -2435 326 4 210 305 19 91 chr6 91086782 91086936 -91328306 + MIR3 SINE MIR 16 158 -50 337 235 39 49 chr6 91087073 91087175 -91328067 + L1MC5 LINE L1 7808 7908 -53 249 254 135 15 chr6 91087355 91087473 -91327769 + MIR SINE MIR 19 151 -65 26 50 0 0 chr6 91088918 91088958 -91326284 + AT_rich Low_complexity Low_complexity 1 40 0 610 303 64 0 chr6 91090230 91090418 -91324824 - MIR SINE MIR 0 262 63 247 204 19 0 chr6 91091870 91091924 -91323318 - MIR3 SINE MIR -1 207 153 293 279 27 48 chr6 91092956 91093103 -91322139 - L2 LINE L2 -211 3061 2918 21 36 0 0 chr6 91093794 91093822 -91321420 + AT_rich Low_complexity Low_complexity 1 28 0 837 152 78 45 chr6 91094633 91094876 -91320366 - Charlie5 DNA MER1_type 0 2624 2374 2007 113 31 3 chr6 91094877 91095170 -91320072 - LTR28 LTR ERV1 -719 301 1 292 354 130 25 chr6 91095170 91095455 -91319787 - L2 LINE L2 -49 3264 2950 2447 183 112 50 chr6 91095459 91096137 -91319105 - LTR8A LTR ERV1 0 727 8 364 371 129 15 chr6 91096163 91096489 -91318753 - L2 LINE L2 -464 2850 2488 737 285 94 8 chr6 91096490 91096725 -91318517 - MIR SINE MIR 0 262 8 233 268 105 59 chr6 91096719 91096872 -91318370 - L2 LINE L2 -804 2510 2351 * 300 308 0 0 chr6 91097088 91097153 -91318089 + L2 LINE L2 3203 3267 -5 2146 97 17 0 chr6 91099461 91099749 -91315493 - AluSx SINE Alu -8 304 12 1850 128 73 4 chr6 91100383 91100657 -91314585 - AluSx SINE Alu -17 295 3 180 0 0 0 chr6 91101088 91101108 -91314134 + (CA)n Simple_repeat Simple_repeat 1 20 0 32 43 0 0 chr6 91102398 91102444 -91312798 + AT_rich Low_complexity Low_complexity 1 46 0 257 258 32 0 chr6 91103793 91103855 -91311387 - MIR SINE MIR -62 146 83 242 359 35 0 chr6 91105230 91105336 -91309906 - MIR SINE MIR -64 144 34 285 308 26 0 chr6 91108500 91108578 -91306664 - MIR3 SINE MIR -13 195 116 1203 225 58 14 chr6 91109250 91109597 -91305645 - L1MB7 LINE L1 -9 6175 5814 794 241 107 13 chr6 91109636 91110098 -91305144 + L1ME4a LINE L1 5560 6078 -43 2286 110 0 0 chr6 91110950 91111260 -91303982 + AluSg SINE Alu 1 310 0 996 172 89 0 chr6 91111858 91112038 -91303204 + AluJo SINE Alu 1 196 -116 201 283 0 17 chr6 91112053 91112113 -91303129 + MIR SINE MIR 191 249 -13 316 218 75 60 chr6 91112113 91112246 -91302996 + HAL1 LINE L1 801 935 -1572 2534 228 171 50 chr6 91112283 91113621 -91301621 + HAL1 LINE L1 1007 2506 -1 1211 159 15 10 chr6 91113630 91113831 -91301411 + AluJo SINE Alu 87 288 -24 524 101 54 0 chr6 91113831 91113960 -91301282 + (TA)n Simple_repeat Simple_repeat 1 136 0 828 154 0 22 chr6 91114022 91114158 -91301084 + FLAM_C SINE Alu 1 133 -10 195 42 0 0 chr6 91114206 91114230 -91301012 + (CATA)n Simple_repeat Simple_repeat 3 26 0 210 307 67 13 chr6 91115216 91115291 -91299951 - L2 LINE L2 -25 3247 3169 21 0 0 0 chr6 91115458 91115479 -91299763 + AT_rich Low_complexity Low_complexity 1 21 0 2228 106 0 10 chr6 91116854 91117166 -91298076 + AluSc SINE Alu 1 309 0 809 167 0 36 chr6 91117175 91117313 -91297929 + FLAM_C SINE Alu 1 133 0 1136 168 6 0 chr6 91118815 91118994 -91296248 + AluJo SINE Alu 1 180 -132 1085 235 109 53 chr6 91119519 91119879 -91295363 - L1ME3A LINE L1 0 6170 5773 858 185 68 0 chr6 91119879 91120041 -91295201 - FAM SINE Alu -2 173 1 1085 235 109 53 chr6 91120041 91120174 -91295068 - L1ME3A LINE L1 -397 5773 5649 23 0 0 0 chr6 91120186 91120209 -91295033 + AT_rich Low_complexity Low_complexity 1 23 0 282 268 37 24 chr6 91120411 91120493 -91294749 + MIR3 SINE MIR 114 196 -12 296 176 15 0 chr6 91120889 91120957 -91294285 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 2254 109 6 0 chr6 91121329 91121640 -91293602 - AluSq SINE Alu 0 313 1 261 380 8 8 chr6 91121737 91121858 -91293384 - MIR SINE MIR -90 172 52 21 36 0 0 chr6 91122351 91122379 -91292863 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr6 91122454 91122491 -91292751 + AT_rich Low_complexity Low_complexity 1 37 0 318 302 9 38 chr6 91123213 91123319 -91291923 + L2 LINE L2 3209 3311 -2 220 268 0 18 chr6 91123372 91123428 -91291814 + MIR SINE MIR 95 149 -59 209 288 14 14 chr6 91123611 91123684 -91291558 + MIR SINE MIR 117 189 -73 * 239 263 0 0 chr6 91123682 91123739 -91291503 - L2 LINE L2 0 3313 3257 366 294 15 112 chr6 91123831 91123902 -91291340 - L2 LINE L2 -311 3002 2926 1552 172 24 24 chr6 91123902 91124193 -91291049 + AluJo SINE Alu 1 291 -21 366 294 15 112 chr6 91124193 91124318 -91290924 - L2 LINE L2 -387 2926 2825 601 189 284 8 chr6 91125579 91125833 -91289409 + MER5C DNA MER1_type 1 324 0 2437 83 0 10 chr6 91126710 91127023 -91288219 - AluY SINE Alu -1 310 1 1733 161 0 56 chr6 91128007 91128311 -91286931 - AluJb SINE Alu -23 289 3 211 253 137 110 chr6 91129032 91129332 -91285910 - L2 LINE L2 -377 2937 2630 22 0 0 0 chr6 91129389 91129411 -91285831 + AT_rich Low_complexity Low_complexity 1 22 0 401 303 220 26 chr6 91130262 91130730 -91284512 + L1MC4a LINE L1 5307 5865 -1943 23 54 0 0 chr6 91130731 91130768 -91284474 + AT_rich Low_complexity Low_complexity 1 37 0 528 238 99 59 chr6 91131218 91131420 -91283822 - MIR SINE MIR -10 252 43 321 283 108 0 chr6 91132288 91132408 -91282834 + MER112 DNA MER1_type 2 134 -126 9182 93 20 1 chr6 91134145 91135408 -91279834 - HSMAR1 DNA Mariner 0 1287 1 234 291 183 6 chr6 91135829 91136004 -91279238 - MIR SINE MIR -51 211 6 885 149 0 15 chr6 91139780 91139914 -91275328 + FLAM_C SINE Alu 1 132 -11 237 198 105 23 chr6 91139946 91140032 -91275210 + L1MC5 LINE L1 7823 7915 -46 2211 92 7 0 chr6 91140217 91140498 -91274744 - AluSc SINE Alu -15 294 12 688 148 48 176 chr6 91140886 91140976 -91274266 + Tigger4(Zombi) DNA MER2_type 49 149 -2582 1012 190 0 11 chr6 91140976 91141150 -91274092 + FAM SINE Alu 1 172 -3 688 148 48 176 chr6 91141150 91141168 -91274074 + Tigger4(Zombi) DNA MER2_type 149 168 -2563 1729 115 0 0 chr6 91141168 91141411 -91273831 + AluSg/x SINE Alu 70 312 0 688 148 48 176 chr6 91141411 91141511 -91273731 + Tigger4(Zombi) DNA MER2_type 168 231 -2500 * 2164 125 30 35 chr6 91141508 91141909 -91273333 + Tigger4(Zombi) DNA MER2_type 2332 2730 -1 242 218 128 13 chr6 91142048 91142126 -91273116 + MIR3 SINE MIR 114 200 -8 263 326 43 0 chr6 91142243 91142335 -91272907 + MIR SINE MIR 119 214 -48 2383 65 0 0 chr6 91142468 91142758 -91272484 - AluY SINE Alu -21 290 1 25 0 0 0 chr6 91142798 91142823 -91272419 + AT_rich Low_complexity Low_complexity 1 25 0 532 211 205 6 chr6 91143853 91144009 -91271233 + MER58A DNA MER1_type 37 223 -1 257 299 69 0 chr6 91145014 91145101 -91270141 - L2 LINE L2 -561 2753 2661 932 164 31 0 chr6 91145108 91145267 -91269975 - MER58B DNA MER1_type -9 332 169 241 229 294 0 chr6 91145703 91145812 -91269430 + Charlie8 DNA MER1_type 4 144 -2273 2343 185 86 24 chr6 91146119 91146337 -91268905 - MER67C LTR ERV1 -4 706 503 2210 156 32 52 chr6 91146337 91146832 -91268410 + MER31A LTR ERV1 1 485 0 2343 185 86 24 chr6 91146832 91147278 -91267964 - MER67C LTR ERV1 -207 503 1 2346 90 7 3 chr6 91147751 91148052 -91267190 + AluSx SINE Alu 1 302 -10 317 255 157 0 chr6 91149345 91149447 -91265795 + L2 LINE L2 3196 3313 0 359 325 128 29 chr6 91149532 91149806 -91265436 - MER102b DNA MER1_type -14 327 27 653 219 48 48 chr6 91150016 91150203 -91265039 + MER5A DNA MER1_type 3 189 0 29 78 0 0 chr6 91150759 91150823 -91264419 + AT_rich Low_complexity Low_complexity 1 64 0 186 205 107 161 chr6 91151006 91151118 -91264124 + L2 LINE L2 3118 3223 -90 468 354 99 52 chr6 91151940 91152454 -91262788 + L1MEd LINE L1 3 564 -5555 2079 116 39 0 chr6 91152454 91152738 -91262504 - AluSq SINE Alu -18 295 1 468 354 99 52 chr6 91152738 91152960 -91262282 + L1MEd LINE L1 564 774 -5345 618 353 48 10 chr6 91153422 91153711 -91261531 + L2 LINE L2 2618 2917 -397 402 316 112 14 chr6 91153907 91154122 -91261120 - MER112 DNA MER1_type -2 258 23 2139 97 11 0 chr6 91154204 91154530 -91260712 + AluSc SINE Alu 1 329 0 23 0 0 0 chr6 91154738 91154761 -91260481 + AT_rich Low_complexity Low_complexity 1 23 0 21 89 0 0 chr6 91155652 91155708 -91259534 + AT_rich Low_complexity Low_complexity 1 56 0 2175 105 27 0 chr6 91156254 91156550 -91258692 + AluSc SINE Alu 1 304 -5 193 224 184 0 chr6 91157057 91157106 -91258136 - MIR SINE MIR -11 251 194 450 254 71 46 chr6 91157684 91157881 -91257361 - MIR SINE MIR -58 204 3 2930 147 52 2 chr6 91158443 91159006 -91256236 + L1MA9 LINE L1 5722 6312 0 1927 83 116 7 chr6 91160429 91160705 -91254537 + AluSx SINE Alu 1 306 -6 2173 93 3 3 chr6 91160707 91161008 -91254234 + AluSg SINE Alu 1 301 -9 330 267 70 155 chr6 91161606 91162239 -91253003 + L1M2 LINE L1 793 1371 -5478 445 249 50 50 chr6 91163985 91164166 -91251076 + L2 LINE L2 3117 3297 -16 1961 83 0 0 chr6 91165468 91165708 -91249534 - AluSc SINE Alu -69 240 1 789 287 96 57 chr6 91168014 91168216 -91247026 - ERVL LTR ERVL -2307 3178 2985 2252 141 28 0 chr6 91168216 91168570 -91246672 - THE1B LTR MaLR 0 364 1 789 287 96 57 chr6 91168570 91169104 -91246138 - ERVL LTR ERVL -2500 2985 2416 2005 122 3 27 chr6 91169104 91169400 -91245842 - AluSx SINE Alu -23 289 1 789 287 96 57 chr6 91169400 91169538 -91245704 - ERVL LTR ERVL -3069 2416 2285 314 328 61 17 chr6 91170480 91170825 -91244417 - ERVL LTR ERVL -4451 1313 954 378 203 0 0 chr6 91171057 91171126 -91244116 + MER81 DNA DNA 10 78 -36 290 351 5 0 chr6 91171607 91171798 -91243444 - L1M4 LINE L1 -1074 5072 4881 2811 80 5 8 chr6 91171816 91172191 -91243051 - THE1C LTR MaLR -1 374 1 1508 134 181 0 chr6 91172320 91172476 -91242766 - AluSg SINE Alu -10 300 174 234 0 0 0 chr6 91172476 91172502 -91242740 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1508 134 181 0 chr6 91172502 91172599 -91242643 - AluSg SINE Alu -136 174 1 977 228 90 0 chr6 91172627 91172960 -91242282 - L1MEc LINE L1 -3568 2647 2285 757 209 0 0 chr6 91172962 91173096 -91242146 + AluJb SINE Alu 1 134 -178 502 229 80 77 chr6 91173099 91173334 -91241908 - L1MEc LINE L1 -4053 2343 2105 2214 121 16 0 chr6 91173334 91173639 -91241603 - AluSq SINE Alu -3 310 1 502 229 80 77 chr6 91173639 91173730 -91241512 - L1MEc LINE L1 -4291 2105 2016 1509 266 72 53 chr6 91173818 91174029 -91241213 - L1MEc LINE L1 -4390 2006 1801 2125 111 3 43 chr6 91174029 91174353 -91240889 - AluY SINE Alu 0 311 1 1509 266 72 53 chr6 91174353 91174556 -91240686 - L1MEc LINE L1 -4595 1801 1603 2292 78 3 32 chr6 91174556 91174864 -91240378 + AluY SINE Alu 1 299 -12 1509 266 72 53 chr6 91174864 91175282 -91239960 - L1MEc LINE L1 -4793 1603 1147 7867 166 5 30 chr6 91175282 91177613 -91237629 + L1PA14 LINE L1 3879 6159 -2 1509 266 72 53 chr6 91177613 91177805 -91237437 - L1MEc LINE L1 -5249 1147 960 1154 144 117 0 chr6 91178154 91178432 -91236810 + MER33 DNA MER1_type 1 295 -29 2039 125 28 3 chr6 91178711 91178999 -91236243 - AluSx SINE Alu -17 295 1 23 0 0 0 chr6 91180833 91180856 -91234386 + AT_rich Low_complexity Low_complexity 1 23 0 1960 95 19 76 chr6 91181758 91181870 -91233372 - AluSx SINE Alu -15 297 180 2278 86 4 0 chr6 91181870 91182188 -91233054 + AluSp SINE Alu 6 324 0 1960 95 19 76 chr6 91182188 91182389 -91232853 - AluSx SINE Alu -132 180 1 585 179 39 19 chr6 91182726 91182882 -91232360 - L1MB8 LINE L1 0 6178 6020 940 211 59 0 chr6 91183960 91184164 -91231078 + MER20 DNA MER1_type 2 217 -2 1825 169 8 35 chr6 91184184 91184550 -91230692 + MLT1B LTR MaLR 1 356 -34 354 336 112 0 chr6 91185441 91185575 -91229667 - MIR3 SINE MIR -44 164 16 329 264 0 58 chr6 91187685 91187772 -91227470 + L2 LINE L2 3231 3312 -1 638 300 58 29 chr6 91188062 91188305 -91226937 + MIR SINE MIR 8 257 -5 225 0 0 0 chr6 91188313 91188338 -91226904 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1309 171 89 53 chr6 91188338 91188610 -91226632 - AluSx SINE Alu -27 285 1 232 291 0 0 chr6 91189487 91189542 -91225700 - L2 LINE L2 -8 3264 3210 2211 103 0 3 chr6 91189601 91189891 -91225351 + AluSc SINE Alu 1 289 -20 185 318 108 54 chr6 91190042 91190190 -91225052 - L2 LINE L2 -218 3054 2899 984 193 20 15 chr6 91191376 91191578 -91223664 + LTR40a LTR ERVL 317 519 0 231 147 74 32 chr6 91191680 91191759 -91223483 + LTR50 LTR ERVL 442 793 -2 1921 165 0 3 chr6 91191874 91192177 -91223065 - AluSx SINE Alu -10 302 1 2188 122 0 3 chr6 91193123 91193426 -91221816 + AluSx SINE Alu 1 302 -10 180 0 0 0 chr6 91193443 91193463 -91221779 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 2441 77 0 13 chr6 91193642 91193953 -91221289 + AluSx SINE Alu 1 307 -5 261 0 0 0 chr6 91194531 91194560 -91220682 + (TA)n Simple_repeat Simple_repeat 1 29 0 191 328 0 0 chr6 91195075 91195136 -91220106 - L2 LINE L2 -4 3309 3249 918 165 12 107 chr6 91197030 91197272 -91217970 - MER20 DNA MER1_type 0 219 1 339 143 286 0 chr6 91197813 91197890 -91217352 - L2 LINE L2 0 3313 3215 25 0 0 0 chr6 91197958 91197983 -91217259 + AT_rich Low_complexity Low_complexity 1 25 0 356 256 50 25 chr6 91198275 91198396 -91216846 - MIR SINE MIR -50 212 89 1445 211 13 10 chr6 91198540 91198848 -91216394 - AluJo SINE Alu -3 309 1 234 0 0 0 chr6 91198858 91198884 -91216358 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1320 88 47 5 chr6 91198889 91199082 -91216160 - AluSp SINE Alu -4 309 109 614 199 60 20 chr6 91199133 91199284 -91215958 + MIR SINE MIR 106 262 0 2424 68 7 7 chr6 91199372 91199680 -91215562 + AluY SINE Alu 1 308 -3 188 65 0 32 chr6 91201637 91201668 -91213574 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr6 91202017 91202040 -91213202 + AT_rich Low_complexity Low_complexity 1 23 0 47 67 0 0 chr6 91202380 91202469 -91212773 + AT_rich Low_complexity Low_complexity 1 89 0 501 324 129 16 chr6 91203034 91203469 -91211773 + L2 LINE L2 2211 2694 -620 241 304 167 29 chr6 91204010 91204112 -91211130 + L2 LINE L2 3182 3297 -16 2460 60 0 7 chr6 91204193 91204494 -91210748 - AluY SINE Alu -12 299 1 24 53 0 0 chr6 91204602 91204640 -91210602 + AT_rich Low_complexity Low_complexity 1 38 0 638 269 48 64 chr6 91204777 91205134 -91210108 - L1ME4a LINE L1 -216 5905 5555 311 253 60 0 chr6 91205335 91205418 -91209824 - MIR SINE MIR -71 191 104 1233 177 74 60 chr6 91205639 91205950 -91209292 + AluJb SINE Alu 1 499 -48 1004 60 22 39 chr6 91205950 91206132 -91209110 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1233 177 74 60 chr6 91206132 91206182 -91209060 + AluJb SINE Alu 499 547 0 189 0 0 0 chr6 91207522 91207543 -91207699 + (TA)n Simple_repeat Simple_repeat 2 22 0 215 302 101 54 chr6 91208603 91208732 -91206510 + MIR3 SINE MIR 8 142 -66 336 190 0 0 chr6 91209982 91210040 -91205202 + L3 LINE CR1 1518 1575 -2 2055 133 0 9 chr6 91210573 91210888 -91204354 - AluSx SINE Alu 0 312 1 1126 253 42 22 chr6 91211337 91211697 -91203545 + HAL1 LINE L1 1 367 -2140 1542 162 3 51 chr6 91211701 91211997 -91203245 + AluJo SINE Alu 5 286 -26 343 133 67 0 chr6 91212001 91212166 -91203076 + (TA)n Simple_repeat Simple_repeat 2 177 0 36 62 0 0 chr6 91212166 91212230 -91203012 + AT_rich Low_complexity Low_complexity 1 64 0 341 82 0 129 chr6 91212231 91212425 -91202817 + (TTATA)n Simple_repeat Simple_repeat 4 172 0 388 133 66 0 chr6 91212463 91212629 -91202613 + (TA)n Simple_repeat Simple_repeat 2 178 0 1024 239 111 42 chr6 91212629 91213035 -91202207 + HAL1 LINE L1 368 801 -1706 236 247 79 56 chr6 91213079 91213168 -91202074 - L2 LINE L2 -428 2886 2796 24 0 0 0 chr6 91213202 91213226 -91202016 + AT_rich Low_complexity Low_complexity 1 24 0 248 300 70 73 chr6 91213650 91213977 -91201265 - L2 LINE L2 -1357 1957 1632 2214 102 0 7 chr6 91214136 91214430 -91200812 - AluSp SINE Alu -21 292 1 1162 271 83 27 chr6 91215015 91215737 -91199505 - L1ME4a LINE L1 -22 6099 5336 22 35 0 0 chr6 91215814 91215843 -91199399 + AT_rich Low_complexity Low_complexity 1 29 0 1758 141 46 87 chr6 91217209 91217600 -91197642 + THE1C LTR MaLR 1 375 0 32 0 0 43 chr6 91217933 91217959 -91197283 + AT_rich Low_complexity Low_complexity 1 26 -19 1938 125 56 0 chr6 91217959 91218247 -91196995 - AluSg SINE Alu -6 304 1 32 0 0 43 chr6 91218247 91218267 -91196975 + AT_rich Low_complexity Low_complexity 26 45 0 181 214 54 18 chr6 91218302 91218358 -91196884 - MIR SINE MIR -71 191 134 366 385 117 18 chr6 91218366 91218929 -91196313 + L2 LINE L2 732 1350 -1964 393 221 154 0 chr6 91219099 91219203 -91196039 - MIR SINE MIR -126 136 17 261 246 263 47 chr6 91219221 91219518 -91195724 + L2 LINE L2 2386 2746 -568 972 242 42 0 chr6 91219544 91219759 -91195483 - MER58A DNA MER1_type 0 224 1 971 317 114 73 chr6 91219774 91219935 -91195307 - L2 LINE L2 0 3272 3119 1993 138 3 0 chr6 91219935 91220226 -91195016 + AluSx SINE Alu 1 292 -20 971 317 114 73 chr6 91220226 91220978 -91194264 - L2 LINE L2 -153 3119 2283 1763 133 0 26 chr6 91220978 91221304 -91193938 - AluJb SINE Alu 0 338 20 971 317 114 73 chr6 91221304 91221714 -91193528 - L2 LINE L2 -989 2283 1891 191 259 0 37 chr6 91222231 91222285 -91192957 + L2 LINE L2 3217 3268 -4 285 325 51 61 chr6 91222607 91222804 -91192438 - L2 LINE L2 -4 3309 3115 636 216 0 22 chr6 91223069 91223208 -91192034 - MLT1A1 LTR MaLR -193 172 37 451 301 105 58 chr6 91223835 91224481 -91190761 - L1MC/D LINE L1 -751 5395 4802 417 178 20 59 chr6 91224508 91224609 -91190633 - MIR SINE MIR -55 207 111 630 273 107 9 chr6 91224782 91224998 -91190244 + MIR SINE MIR 10 246 -16 21 0 0 0 chr6 91225017 91225038 -91190204 + AT_rich Low_complexity Low_complexity 1 21 0 311 271 147 16 chr6 91225045 91225133 -91190109 + L1M4c LINE L1 1551 1664 -4720 6078 64 0 3 chr6 91225133 91225943 -91189299 + L1PA7 LINE L1 5363 6170 0 311 271 147 16 chr6 91225943 91225982 -91189260 + L1M4c LINE L1 1664 1696 -4688 194 313 24 24 chr6 91226696 91226779 -91188463 + MIR SINE MIR 35 117 -145 465 293 86 6 chr6 91227371 91227545 -91187697 - MIR SINE MIR -28 234 47 5507 113 39 32 chr6 91229141 91230272 -91184970 - L1PA13 LINE L1 -5 6158 5064 277 349 48 6 chr6 91230272 91230438 -91184804 - L2 LINE L2 -2946 368 196 2512 74 0 0 chr6 91230454 91230766 -91184476 + AluSx SINE Alu 1 312 0 205 264 38 0 chr6 91231366 91231419 -91183823 - L3b LINE CR1 -1 1582 1528 14439 131 27 20 chr6 91231634 91232468 -91182774 + Tigger1 DNA MER2_type 4 831 -1587 882 0 0 0 chr6 91232468 91232566 -91182676 + (CATAA)n Simple_repeat Simple_repeat 4 101 0 14439 131 27 20 chr6 91232566 91234010 -91181232 + Tigger1 DNA MER2_type 831 2264 -154 216 0 0 0 chr6 91234010 91234034 -91181208 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1595 196 0 14 chr6 91234037 91234323 -91180919 - AluJb SINE Alu -30 282 1 14439 131 27 20 chr6 91234323 91234438 -91180804 + Tigger1 DNA MER2_type 2265 2418 0 434 258 76 50 chr6 91234682 91234880 -91180362 + MARNA DNA Mariner 313 515 -71 27 29 0 0 chr6 91235856 91235890 -91179352 + AT_rich Low_complexity Low_complexity 1 34 0 182 217 72 72 chr6 91236160 91236229 -91179013 - L3 LINE CR1 -1177 400 332 258 234 63 57 chr6 91237065 91237085 -91178157 - L1MA10 LINE L1 0 6334 6315 529 293 35 15 chr6 91237085 91237283 -91177959 - L1ME1 LINE L1 -10 6156 5955 1725 161 29 0 chr6 91237300 91237451 -91177791 - AluJb SINE Alu -24 288 124 315 0 0 0 chr6 91237451 91237486 -91177756 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1725 161 29 0 chr6 91237486 91237614 -91177628 - AluJb SINE Alu -188 124 1 288 218 128 0 chr6 91237621 91237699 -91177543 + MIR SINE MIR 175 262 0 24 53 0 0 chr6 91238331 91238369 -91176873 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr6 91240566 91240596 -91174646 + AT_rich Low_complexity Low_complexity 1 30 0 1453 92 11 96 chr6 91240596 91240867 -91174375 - L1MA2 LINE L1 -9 6295 6048 220 242 16 0 chr6 91241484 91241546 -91173696 + (TA)n Simple_repeat Simple_repeat 2 64 0 2282 105 0 7 chr6 91241615 91241920 -91173322 + AluSx SINE Alu 1 303 -9 2835 173 78 36 chr6 91243477 91243774 -91171468 + Tigger6b DNA MER2_type 147 430 -1167 2022 121 0 0 chr6 91243774 91244099 -91171143 + AluSx SINE Alu 1 325 0 2835 173 78 36 chr6 91244099 91244187 -91171055 + Tigger6b DNA MER2_type 430 513 -1084 2479 33 10 3 chr6 91244187 91244487 -91170755 - AluY SINE Alu -9 302 1 2232 78 10 7 chr6 91244487 91244793 -91170449 - AluY SINE Alu -4 307 1 2835 173 78 36 chr6 91244793 91245588 -91169654 + Tigger6b DNA MER2_type 512 1558 -39 2070 110 7 0 chr6 91246342 91246652 -91168590 + AluSx SINE Alu 1 284 -28 4972 198 130 97 chr6 91246742 91247167 -91168075 + L1MCa LINE L1 28 437 -5989 1521 185 0 54 chr6 91247167 91247481 -91167761 - AluJo SINE Alu -15 297 1 4972 198 130 97 chr6 91247481 91249241 -91166001 + L1MCa LINE L1 437 2287 -4139 284 265 59 0 chr6 91249559 91249627 -91165615 + L2 LINE L2 3201 3272 0 2132 141 0 0 chr6 91250246 91250599 -91164643 + AluSx SINE Alu 1 353 0 238 61 0 0 chr6 91250599 91250632 -91164610 + L1PA8A LINE L1 5891 5923 -208 * 2187 117 5 36 chr6 91250629 91250849 -91164393 + L1PA15-16 LINE L1 1923 2127 -4722 6902 66 5 12 chr6 91250849 91251669 -91163573 + L1PA8 LINE L1 5002 5818 -354 2741 17 0 0 chr6 91251669 91251971 -91163271 + AluY SINE Alu 1 302 -9 6902 66 5 12 chr6 91251971 91252324 -91162918 + L1PA8 LINE L1 5818 6172 0 2187 117 5 36 chr6 91252324 91252495 -91162747 + L1PA15-16 LINE L1 2127 2302 -4547 * 4346 216 48 11 chr6 91252490 91253636 -91161606 + L1MCa LINE L1 3298 4485 -1941 858 169 7 0 chr6 91253636 91253790 -91161452 - L1P5 LINE L1 -347 5809 5655 845 271 115 43 chr6 91254064 91254455 -91160787 - L2 LINE L2 -4 3309 2891 705 250 94 9 chr6 91254820 91255032 -91160210 + MIR SINE MIR 3 232 -30 217 204 114 0 chr6 91255686 91255730 -91159512 - MIR SINE MIR -15 247 199 35678 103 13 9 chr6 91255880 91261998 -91153244 - L1PA7 LINE L1 -3 6151 11 1027 175 26 53 chr6 91262007 91262235 -91153007 - L1MB2 LINE L1 -40 6131 5910 23 0 0 0 chr6 91262796 91262819 -91152423 + AT_rich Low_complexity Low_complexity 1 23 0 4828 198 57 27 chr6 91263140 91264227 -91151015 + L1PA13 LINE L1 1535 2654 -4927 883 111 0 0 chr6 91264235 91264352 -91150890 - AluSp/q SINE Alu -16 297 181 8206 164 51 128 chr6 91264363 91266306 -91148936 + L1PA13 LINE L1 4544 6265 -1319 10668 128 4 24 chr6 91266306 91268822 -91146420 - L1PA10 LINE L1 0 6168 3654 8206 164 51 128 chr6 91268822 91269310 -91145932 + L1PA13 LINE L1 6265 6789 -795 276 130 0 0 chr6 91269310 91269356 -91145886 + (T)n Simple_repeat Simple_repeat 1 46 0 4515 54 2 0 chr6 91269372 91269930 -91145312 + L1PA5 LINE L1 5595 6153 -1 2210 128 0 0 chr6 91269957 91270365 -91144877 - AluSx SINE Alu 0 408 1 5137 127 4 11 chr6 91270365 91271197 -91144045 + L1PA13 LINE L1 6776 7601 0 203 262 175 63 chr6 91272433 91272559 -91142683 - L3 LINE CR1 -7 1570 1431 189 352 19 37 chr6 91272637 91272745 -91142497 - L3 LINE CR1 -165 1412 1307 471 260 24 77 chr6 91272792 91272961 -91142281 - MIR SINE MIR -54 208 49 911 248 116 51 chr6 91273896 91274428 -91140814 - L2 LINE L2 -9 3304 2756 2126 281 89 46 chr6 91277369 91278625 -91136617 - L2 LINE L2 -6 3307 2005 305 262 78 29 chr6 91278721 91278824 -91136418 - L3 LINE CR1 -921 656 549 1245 277 6 38 chr6 91278880 91279223 -91136019 + LTR16A LTR ERVL 113 444 -6 3325 279 83 21 chr6 91279330 91281278 -91133964 + HERV16 LTR ERVL 125 2293 -2703 239 281 83 10 chr6 91281438 91281475 -91133767 + LTR16A LTR ERVL 348 381 -69 1956 125 3 23 chr6 91281475 91281779 -91133463 - AluSx SINE Alu -14 298 1 239 281 83 10 chr6 91281779 91281837 -91133405 + LTR16A LTR ERVL 381 450 0 634 115 0 0 chr6 91282972 91283059 -91132183 + Tigger4(Zombi) DNA MER2_type 1 87 -2644 * 2279 136 68 10 chr6 91283056 91283468 -91131774 + Tigger4(Zombi) DNA MER2_type 2295 2730 -1 236 204 111 0 chr6 91284177 91284231 -91131011 + MIR SINE MIR 96 155 -107 1871 149 3 7 chr6 91284339 91284627 -91130615 + AluSc SINE Alu 1 287 -22 2064 234 16 16 chr6 91285083 91285655 -91129587 + L1M4 LINE L1 3929 4500 -1646 23 0 0 0 chr6 91285669 91285692 -91129550 + AT_rich Low_complexity Low_complexity 1 23 0 260 259 138 26 chr6 91285734 91285850 -91129392 + MLT1-int LTR MaLR 416 544 -827 3164 21 0 3 chr6 91286021 91286399 -91128843 - L1PA3 LINE L1 -1629 4517 4141 7867 14 0 0 chr6 91286399 91288087 -91127155 + L1PA3 LINE L1 4516 6203 0 289 244 106 18 chr6 91288849 91288970 -91126272 + MLT1H LTR MaLR 430 531 -18 289 250 50 0 chr6 91289037 91289117 -91126125 - MER94 DNA DNA -32 102 19 30051 113 12 66 chr6 91289581 91292210 -91123032 + L1PA7 LINE L1 9 2778 -3376 197 33 33 0 chr6 91292210 91292240 -91123002 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 30051 113 12 66 chr6 91292240 91295627 -91119615 + L1PA7 LINE L1 2778 5634 -520 8932 45 1 5 chr6 91295627 91296700 -91118542 + MER11C LTR ERVK 1 1069 -2 30051 113 12 66 chr6 91296700 91297192 -91118050 + L1PA7 LINE L1 5634 6151 -3 24 53 0 0 chr6 91297218 91297256 -91117986 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr6 91297828 91297857 -91117385 + AT_rich Low_complexity Low_complexity 1 29 0 355 292 48 18 chr6 91297860 91298028 -91117214 - L1ME4a LINE L1 -3 6118 5946 261 224 37 37 chr6 91298344 91298493 -91116749 - L1ME4a LINE L1 -727 5429 5310 1622 165 26 36 chr6 91298528 91298837 -91116405 - AluJo SINE Alu -1 311 6 286 271 0 14 chr6 91299193 91299263 -91115979 - MER5A DNA MER1_type -83 106 38 2324 147 13 8 chr6 91299858 91300030 -91115212 + MLT1B LTR MaLR 1 171 -219 2402 82 3 0 chr6 91300030 91300334 -91114908 + AluSg1 SINE Alu 1 305 -4 2324 147 13 8 chr6 91300334 91300541 -91114701 + MLT1B LTR MaLR 171 382 -8 4454 130 9 4 chr6 91300944 91301635 -91113607 + L1PB3 LINE L1 5460 6153 -1 22 35 0 0 chr6 91301635 91301664 -91113578 + AT_rich Low_complexity Low_complexity 1 29 0 43187 29 21 1 chr6 91302675 91308695 -91106547 + L1HS LINE L1 1 6144 -11 186 43 0 0 chr6 91308695 91308718 -91106524 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 329 321 114 20 chr6 91308761 91309113 -91106129 - L1M4 LINE L1 -1747 4399 4015 361 227 376 0 chr6 91309217 91309358 -91105884 - MIR SINE MIR -10 252 59 198 0 0 0 chr6 91309851 91309873 -91105369 + (CAAT)n Simple_repeat Simple_repeat 1 22 0 563 267 80 38 chr6 91309914 91310173 -91105069 + MER77 LTR ERV1 312 598 -7 2685 118 39 31 chr6 91310403 91311066 -91104176 + MER51A LTR ERV1 1 598 -36 181 396 63 0 chr6 91311167 91311278 -91103964 + L2 LINE L2 3133 3250 -22 2719 81 25 49 chr6 91311289 91311409 -91103833 - L1MA4A LINE L1 -4 6299 6178 2044 125 14 0 chr6 91311409 91311706 -91103536 - AluSp SINE Alu -12 301 1 2719 81 25 49 chr6 91311706 91312032 -91103210 - L1MA4A LINE L1 -125 6178 5864 1329 169 0 56 chr6 91312761 91313028 -91102214 + AluJo SINE Alu 49 300 -12 971 193 0 6 chr6 91313151 91313322 -91101920 + AluJb SINE Alu 129 298 -14 2036 101 11 0 chr6 91313324 91313636 -91101606 + AluY SINE Alu 1 315 0 46 33 0 0 chr6 91313672 91313732 -91101510 + AT_rich Low_complexity Low_complexity 1 60 0 802 200 7 13 chr6 91313732 91313887 -91101355 - AluJb SINE Alu -23 289 136 27 0 0 0 chr6 91314581 91314608 -91100634 + AT_rich Low_complexity Low_complexity 1 27 0 204 40 0 0 chr6 91315642 91315667 -91099575 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 2330 95 0 10 chr6 91315671 91315977 -91099265 - AluSg SINE Alu -7 303 1 389 318 18 0 chr6 91316271 91316381 -91098861 + L2 LINE L2 3201 3312 -1 200 272 12 25 chr6 91316392 91316473 -91098769 + MIR SINE MIR 183 262 0 431 389 20 15 chr6 91316493 91316696 -91098546 - MIR3 SINE MIR -1 207 4 21 71 0 0 chr6 91316698 91316740 -91098502 + AT_rich Low_complexity Low_complexity 1 42 0 2225 103 16 10 chr6 91317426 91317737 -91097505 + AluSq SINE Alu 1 313 0 26 0 0 0 chr6 91317796 91317822 -91097420 + AT_rich Low_complexity Low_complexity 1 26 0 284 171 0 0 chr6 91318911 91318952 -91096290 - L2 LINE L2 -18 3254 3214 1828 143 3 70 chr6 91319182 91319510 -91095732 - AluJo SINE Alu -6 306 1 261 0 0 0 chr6 91319694 91319723 -91095519 + (A)n Simple_repeat Simple_repeat 1 29 0 649 246 0 0 chr6 91319840 91319970 -91095272 + AluJo SINE Alu 6 135 -177 182 277 170 27 chr6 91320158 91320270 -91094972 + MIR SINE MIR 4 131 -131 31 44 0 0 chr6 91321095 91321140 -91094102 + AT_rich Low_complexity Low_complexity 1 45 0 278 315 124 17 chr6 91321547 91321725 -91093517 - L1ME3A LINE L1 -12 6158 5962 1531 211 63 40 chr6 91321799 91322278 -91092964 - L1MC5 LINE L1 -517 7444 6955 870 173 33 103 chr6 91322315 91322587 -91092655 - L1MC5 LINE L1 -995 6966 6714 1135 259 48 32 chr6 91322591 91322860 -91092382 + L2 LINE L2 1922 2200 -1114 1973 129 7 17 chr6 91322860 91323154 -91092088 - AluSx SINE Alu -21 291 1 1135 259 48 32 chr6 91323154 91323259 -91091983 + L2 LINE L2 2200 2302 -1012 268 308 95 98 chr6 91323244 91323569 -91091673 + L2 LINE L2 2980 3303 -10 * 30 0 0 0 chr6 91323888 91323918 -91091324 + AT_rich Low_complexity Low_complexity 1 30 0 463 165 11 0 chr6 91323976 91324067 -91091175 - L1PB4 LINE L1 -1 6155 6064 2124 227 77 6 chr6 91325472 91326239 -91089003 - L1MC4 LINE L1 -140 7902 6922 3337 61 40 0 chr6 91326239 91326625 -91088617 + MLT2A1 LTR ERVL 1 370 -74 306 0 0 0 chr6 91326625 91326659 -91088583 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 351 0 0 0 chr6 91326658 91326697 -91088545 + (TA)n Simple_repeat Simple_repeat 2 40 0 3337 61 40 0 chr6 91326659 91326737 -91088505 + MLT2A1 LTR ERVL 370 444 0 325 0 0 0 chr6 91326740 91326776 -91088466 + MLT2A2 LTR ERVL 418 453 0 6534 66 0 0 chr6 91326776 91327591 -91087651 + HERVL-A2 LTR ERVL 1 815 -4839 1081 166 9 14 chr6 91327733 91327944 -91087298 - SVA Other Other -709 677 468 32036 77 12 2 chr6 91327944 91332727 -91082515 + HERVL-A1 LTR ERVL 844 5654 0 3473 57 11 7 chr6 91332727 91333169 -91082073 + MLT2A1 LTR ERVL 1 444 0 1141 251 195 0 chr6 91333172 91333436 -91081806 - L1MC4 LINE L1 -1119 6923 6712 362 21 21 0 chr6 91333436 91333483 -91081759 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 1141 251 195 0 chr6 91333483 91333608 -91081634 - L1MC4 LINE L1 -1330 6712 6458 2225 102 0 3 chr6 91333821 91334116 -91081126 - AluSq SINE Alu -19 294 1 445 188 0 0 chr6 91334300 91334380 -91080862 + AluJ/FLAM SINE Alu 1 80 -232 309 365 8 80 chr6 91334952 91335190 -91080052 + L2 LINE L2 2967 3187 -85 224 241 17 0 chr6 91335208 91335266 -91079976 + GA-rich Low_complexity Low_complexity 3 61 0 10652 110 33 19 chr6 91335493 91337160 -91078082 - Tigger1 DNA MER2_type -727 1691 1 325 80 0 0 chr6 91337736 91337786 -91077456 - L1PA7 LINE L1 -1 6153 6104 503 198 0 0 chr6 91338267 91338363 -91076879 + AluJb SINE Alu 202 297 -15 624 14 0 0 chr6 91338376 91338449 -91076793 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 183 308 223 54 chr6 91338608 91338868 -91076374 + L3b LINE CR1 1113 1416 -167 353 303 125 7 chr6 91340694 91340846 -91074396 + L2 LINE L2 3112 3281 -32 743 280 33 9 chr6 91340847 91341058 -91074184 + MLT1H1 LTR MaLR 1 216 -339 4478 227 133 44 chr6 91341065 91341961 -91073281 + Charlie2a DNA MER1_type 35 850 -2012 1838 115 68 0 chr6 91341961 91342240 -91073002 - AluSg SINE Alu -12 298 1 4478 227 133 44 chr6 91342240 91342332 -91072910 + Charlie2a DNA MER1_type 850 932 -1930 10275 111 6 0 chr6 91342332 91344637 -91070605 - L1PA10 LINE L1 -4 6164 3832 4478 227 133 44 chr6 91344637 91344946 -91070296 + Charlie2a DNA MER1_type 932 1212 -1650 1913 140 44 0 chr6 91344946 91345239 -91070003 + AluSq SINE Alu 1 306 -7 1811 162 0 16 chr6 91345241 91345556 -91069686 + AluSx SINE Alu 1 310 -2 4478 227 133 44 chr6 91345556 91346128 -91069114 + Charlie2a DNA MER1_type 1212 2076 -786 30 0 0 0 chr6 91346339 91346369 -91068873 + AT_rich Low_complexity Low_complexity 1 30 0 192 152 0 0 chr6 91347381 91347414 -91067828 + T-rich Low_complexity Low_complexity 1 33 0 213 146 0 36 chr6 91348651 91348702 -91066540 - MIR SINE MIR -63 145 100 247 352 194 37 chr6 91348963 91349664 -91065578 - L2 LINE L2 -437 2877 2067 26 0 0 0 chr6 91349906 91349932 -91065310 + AT_rich Low_complexity Low_complexity 1 26 0 653 71 0 0 chr6 91350118 91350202 -91065040 - AluY SINE Alu -12 299 216 499 284 122 55 chr6 91350473 91351060 -91064182 + L2 LINE L2 2613 3312 -1 1441 182 48 0 chr6 91351538 91351844 -91063398 + MLT2D LTR ERVL 1 357 -40 210 143 0 0 chr6 91351844 91351879 -91063363 + (CATA)n Simple_repeat Simple_repeat 4 38 0 276 167 0 0 chr6 91351880 91351928 -91063314 + MLT2D LTR ERVL 417 464 0 192 273 55 0 chr6 91351932 91351987 -91063255 + MIR SINE MIR 32 89 -119 3763 124 61 11 chr6 91352694 91353672 -91061570 - L1PA16 LINE L1 -309 5857 4829 795 296 98 27 chr6 91353677 91353974 -91061268 - L3 LINE CR1 -241 1336 1019 1469 184 88 23 chr6 91355403 91355746 -91059496 + MLT1A1 LTR MaLR 1 365 0 313 321 60 15 chr6 91356668 91356802 -91058440 + L2 LINE L2 2262 2401 -913 1750 167 10 14 chr6 91356814 91357108 -91058134 - AluJb SINE Alu -19 293 1 204 301 62 44 chr6 91357216 91357329 -91057913 - MIR SINE MIR 0 262 148 1842 140 35 11 chr6 91357566 91357851 -91057391 + AluSx SINE Alu 1 292 -20 341 185 98 11 chr6 91359441 91359533 -91055709 - L1MC4 LINE L1 -15 8027 7928 219 225 0 0 chr6 91359593 91359664 -91055578 + (TA)n Simple_repeat Simple_repeat 2 72 0 280 190 127 0 chr6 91359677 91359756 -91055486 - MER46C DNA MER2_type -136 202 114 525 305 45 0 chr6 91359902 91360056 -91055186 - MIR SINE MIR -95 167 7 * 766 265 41 45 chr6 91360038 91360306 -91054936 + L2 LINE L2 2475 2741 -573 227 247 12 49 chr6 91360306 91360387 -91054855 - MER4D LTR ERV1 -36 836 759 859 266 78 30 chr6 91360398 91360759 -91054483 + L2 LINE L2 2826 3203 -110 32 75 0 0 chr6 91362763 91362830 -91052412 + AT_rich Low_complexity Low_complexity 1 67 0 955 169 0 0 chr6 91362993 91363177 -91052065 + L1MA4 LINE L1 6113 6296 -4 2126 128 10 0 chr6 91363803 91364109 -91051133 - AluSx SINE Alu -3 309 1 2403 94 0 0 chr6 91364198 91364496 -91050746 - AluSc SINE Alu -11 298 1 6144 141 22 39 chr6 91364525 91364805 -91050437 + L1MA8 LINE L1 4122 4405 -1886 1729 153 36 11 chr6 91364805 91365080 -91050162 + AluSx SINE Alu 5 286 -26 6144 141 22 39 chr6 91365080 91367004 -91048238 + L1MA8 LINE L1 4405 6286 -5 22 0 0 0 chr6 91367004 91367026 -91048216 + AT_rich Low_complexity Low_complexity 1 22 0 1357 128 5 0 chr6 91367412 91367608 -91047634 + AluSg SINE Alu 1 197 -113 423 40 0 0 chr6 91367608 91367658 -91047584 + AluSg/x SINE Alu 65 114 -196 318 196 0 0 chr6 91367658 91367709 -91047533 - AluSx SINE Alu -125 177 127 1222 84 0 24 chr6 91367709 91367898 -91047344 - AluSx SINE Alu 0 304 120 6782 63 14 12 chr6 91367998 91369816 -91045426 - L1PA8 LINE L1 -3 6169 4350 19387 88 1 0 chr6 91370252 91373761 -91041481 + L1PA7 LINE L1 2611 6151 -3 217 204 114 0 chr6 91373911 91373955 -91041287 + MIR SINE MIR 199 247 -15 705 250 94 9 chr6 91374610 91374822 -91040420 - MIR SINE MIR -30 232 3 845 271 115 43 chr6 91375187 91375578 -91039664 + L2 LINE L2 2891 3309 -4 858 169 7 0 chr6 91375852 91376006 -91039236 + L1P5 LINE L1 5655 5809 -347 4346 216 48 11 chr6 91376006 91377152 -91038090 - L1 LINE L1 -1941 4205 3018 984 129 0 6 chr6 91377147 91377317 -91037925 - L1PA15-16 LINE L1 -4547 2302 2134 * 6758 67 27 5 chr6 91377318 91377837 -91037405 - L1PA8 LINE L1 0 6172 5666 8932 45 1 5 chr6 91377837 91378910 -91036332 - MER11C LTR ERVK -2 1069 1 6758 67 27 5 chr6 91378910 91379539 -91035703 - L1PA8 LINE L1 -506 5666 5027 962 83 16 0 chr6 91379685 91379806 -91035436 - AluSx SINE Alu -187 125 3 695 215 51 0 chr6 91380464 91380641 -91034601 + L2 LINE L2 1912 2097 -1217 1634 152 191 6 chr6 91380641 91381002 -91034240 + MSTA LTR MaLR 1 428 0 1477 248 103 48 chr6 91381005 91381660 -91033582 + L2 LINE L2 2468 3171 -142 988 177 0 0 chr6 91381693 91381851 -91033391 + FRAM SINE Alu 1 150 -26 22 0 0 0 chr6 91381851 91381873 -91033369 + AT_rich Low_complexity Low_complexity 1 22 0 275 287 172 11 chr6 91381873 91381960 -91033282 + L2 LINE L2 3196 3296 -17 9676 157 15 18 chr6 91382145 91383778 -91031464 + ERVL-D LTR ERVL 4108 5735 -29 1865 179 13 55 chr6 91383779 91383999 -91031243 - MLT1A1 LTR MaLR 0 365 166 12951 94 6 18 chr6 91383999 91386235 -91029007 - L1PA8 LINE L1 0 6172 3964 2743 13 0 0 chr6 91386235 91386533 -91028709 - AluYa5 SINE Alu -13 298 1 12951 94 6 18 chr6 91386533 91386990 -91028252 - L1PA8 LINE L1 -2208 3964 3503 1865 179 13 55 chr6 91386990 91387150 -91028092 - MLT1A1 LTR MaLR -199 166 1 1132 254 43 24 chr6 91387152 91387481 -91027761 + MLT2D LTR ERVL 37 375 -39 303 28 0 0 chr6 91387481 91387517 -91027725 + (CA)n Simple_repeat Simple_repeat 1 36 0 1132 254 43 24 chr6 91387517 91387557 -91027685 + MLT2D LTR ERVL 375 413 -1 284 309 31 10 chr6 91387595 91387692 -91027550 - MIR SINE MIR -67 195 97 194 343 30 15 chr6 91387761 91387828 -91027414 - MIR SINE MIR -164 98 31 292 285 0 70 chr6 91388510 91388617 -91026625 + MIR SINE MIR 58 154 -63 1930 177 17 8 chr6 91389408 91389770 -91025472 + MLT1A1 LTR MaLR 1 365 0 452 234 62 21 chr6 91390583 91390728 -91024514 + L2 LINE L2 3158 3308 -5 22 35 0 0 chr6 91390823 91390852 -91024390 + AT_rich Low_complexity Low_complexity 1 29 0 2255 74 46 0 chr6 91391609 91391892 -91023350 + AluSg SINE Alu 1 296 -14 293 250 10 77 chr6 91392873 91392977 -91022265 + L2 LINE L2 3212 3308 -5 1675 189 78 10 chr6 91393084 91393492 -91021750 + L1ME1 LINE L1 5713 6148 -18 1224 142 0 25 chr6 91393602 91393799 -91021443 - AluJb SINE Alu -95 217 26 31 58 0 0 chr6 91393905 91393957 -91021285 + AT_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr6 91394088 91394112 -91021130 + AT_rich Low_complexity Low_complexity 1 24 0 1662 207 0 6 chr6 91394339 91394653 -91020589 + AluJo SINE Alu 1 312 0 21 0 0 0 chr6 91395115 91395136 -91020106 + AT_rich Low_complexity Low_complexity 1 21 0 399 239 11 0 chr6 91396376 91396464 -91018778 - MER20 DNA MER1_type -3 216 128 737 189 107 37 chr6 91397004 91397119 -91018123 + Charlie4 DNA MER1_type 23 129 -379 1859 144 3 23 chr6 91397119 91397424 -91017818 + AluJb SINE Alu 1 299 -13 737 189 107 37 chr6 91397424 91397552 -91017690 + Charlie4 DNA MER1_type 129 283 -225 1359 190 60 26 chr6 91397558 91397856 -91017386 - AluJo SINE Alu 0 312 6 2197 95 0 3 chr6 91397865 91398191 -91017051 - AluSc SINE Alu 0 325 1 619 220 39 58 chr6 91398258 91398517 -91016725 + Charlie4 DNA MER1_type 1703 1956 -5 1439 201 137 58 chr6 91398681 91399163 -91016079 - MLT2B1 LTR ERVL 0 520 1 256 347 120 55 chr6 91399174 91399655 -91015587 - L2 LINE L2 -18 3254 2749 763 262 107 77 chr6 91400292 91400583 -91014659 + MLT1J LTR MaLR 1 315 -196 2232 121 0 0 chr6 91400583 91400880 -91014362 - AluSx SINE Alu -15 297 1 763 262 107 77 chr6 91400880 91401084 -91014158 + MLT1J LTR MaLR 315 511 0 238 266 18 71 chr6 91401249 91401362 -91013880 - L2 LINE L2 0 3313 3207 286 60 12 84 chr6 91401373 91401456 -91013786 + (TTTTTG)n Simple_repeat Simple_repeat 2 78 0 576 135 45 0 chr6 91401457 91401568 -91013674 - LTR9B LTR ERV1 -84 560 445 2665 236 55 75 chr6 91402789 91404029 -91011213 + L1MDb LINE L1 796 2060 -4346 1702 204 13 0 chr6 91404029 91404337 -91010905 + AluJb SINE Alu 1 312 0 2665 236 55 75 chr6 91404337 91404356 -91010886 + L1MDb LINE L1 2060 2078 -4328 1674 160 48 4 chr6 91404356 91404624 -91010618 + AluJb SINE Alu 18 297 -15 2665 236 55 75 chr6 91404624 91405079 -91010163 + L1MDb LINE L1 2078 2455 -3951 392 221 12 0 chr6 91405082 91405168 -91010074 + MER99 DNA DNA 503 589 -239 882 154 19 12 chr6 91405228 91405390 -91009852 - MLT1B LTR MaLR -3 387 225 240 35 0 0 chr6 91405511 91405540 -91009702 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1303 147 106 70 chr6 91405542 91405815 -91009427 - AluJo SINE Alu -29 283 1 2756 75 13 11 chr6 91405848 91406222 -91009020 - THE1C LTR MaLR 0 375 1 916 184 184 21 chr6 91406389 91406628 -91008614 + MSTD LTR MaLR 1 278 -118 199 333 33 0 chr6 91408130 91408190 -91007052 - L2 LINE L2 -2 3270 3209 2114 143 3 3 chr6 91408242 91408549 -91006693 + AluSx SINE Alu 1 307 -5 2268 71 0 0 chr6 91409494 91409799 -91005443 + AluY SINE Alu 1 305 0 264 30 0 0 chr6 91410695 91410728 -91004514 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 477 276 179 81 chr6 91411262 91411819 -91003423 - L1M2 LINE L1 -5465 1384 773 559 78 0 0 chr6 91412512 91412589 -91002653 - AluS SINE Alu -236 77 1 188 270 48 0 chr6 91412703 91412766 -91002476 + MIR SINE MIR 102 167 -95 22 0 0 0 chr6 91413463 91413485 -91001757 + AT_rich Low_complexity Low_complexity 1 22 0 857 173 45 0 chr6 91414101 91414280 -91000962 - MER3 DNA MER1_type 0 2421 2235 382 202 101 0 chr6 91414283 91414392 -91000850 - MER3 DNA MER1_type -41 168 49 2071 122 4 0 chr6 91414839 91415117 -91000125 - AluSx SINE Alu -33 279 1 1899 163 0 29 chr6 91415224 91415531 -90999711 + AluJb SINE Alu 1 298 -14 320 167 33 0 chr6 91415554 91415614 -90999628 - MLT1C LTR MaLR -405 62 1 591 247 108 0 chr6 91415614 91415772 -90999470 + MIR SINE MIR 23 197 -65 411 242 76 15 chr6 91415780 91415912 -90999330 - L2 LINE L2 -4 3309 3170 387 109 0 0 chr6 91415943 91415998 -90999244 + MIR SINE MIR 198 252 -10 245 274 32 0 chr6 91416065 91416127 -90999115 - L2 LINE L2 -1 3312 3249 241 301 183 0 chr6 91416513 91416606 -90998636 + MIR SINE MIR 12 121 -141 2203 123 7 0 chr6 91416758 91417068 -90998174 + AluSx SINE Alu 1 312 0 676 265 31 33 chr6 91417498 91417700 -90997542 - MLT1G LTR MaLR 0 555 354 201 39 0 0 chr6 91417700 91417726 -90997516 + (TC)n Simple_repeat Simple_repeat 2 27 0 676 265 31 33 chr6 91417726 91418075 -90997167 - MLT1G LTR MaLR -201 354 8 2240 96 3 3 chr6 91418240 91418543 -90996699 + AluSx SINE Alu 1 303 -9 565 190 0 0 chr6 91418592 91418692 -90996550 - FLAM_C SINE Alu -14 129 30 180 0 0 0 chr6 91418793 91418813 -90996429 + (A)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr6 91419167 91419197 -90996045 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr6 91419584 91419613 -90995629 + AT_rich Low_complexity Low_complexity 1 29 0 15519 30 0 0 chr6 91420206 91422167 -90993075 - L1P LINE L1 -1913 4233 2273 7752 18 5 0 chr6 91422168 91423095 -90992147 + L1PA3 LINE L1 5225 6155 0 394 183 231 0 chr6 91424140 91424244 -90990998 - L2 LINE L2 -3 3310 3183 3393 101 44 4 chr6 91424272 91424777 -90990465 + LTR17 LTR ERV1 256 780 0 14382 68 36 3 chr6 91424777 91426723 -90988519 + HERV17 LTR ERV1 1 2010 -6616 * 27811 50 9 2 chr6 91426713 91430276 -90984966 + HERV17 LTR ERV1 2431 6019 -2607 2174 76 3 0 chr6 91430298 91430589 -90984653 + HERV17 LTR ERV1 8335 8626 0 2334 45 45 6 chr6 91430589 91430903 -90984339 + LTR17 LTR ERV1 1 326 -454 369 0 0 0 chr6 91430904 91430945 -90984297 + (TAA)n Simple_repeat Simple_repeat 2 42 0 365 247 0 35 chr6 91431106 91431191 -90984051 - L2 LINE L2 0 3272 3191 231 369 48 24 chr6 91431350 91431434 -90983808 + L2 LINE L2 3139 3224 -48 344 339 34 0 chr6 91432479 91432597 -90982645 + L3 LINE CR1 564 685 -892 1062 292 152 43 chr6 91432799 91432949 -90982293 + L3 LINE CR1 668 800 -777 2011 125 10 10 chr6 91432949 91433246 -90981996 + AluSx SINE Alu 1 297 -15 1062 292 152 43 chr6 91433246 91433725 -90981517 + L3 LINE CR1 800 1366 -211 392 292 134 46 chr6 91433705 91433989 -90981253 + L2 LINE L2 3005 3313 0 * 203 239 22 0 chr6 91433986 91434032 -90981210 + L3 LINE CR1 1338 1384 -193 * 193 316 140 35 chr6 91434152 91434266 -90980976 - MIR SINE MIR -132 130 5 * 424 253 133 66 chr6 91434261 91434427 -90980815 + L3 LINE CR1 1400 1576 -1 2347 89 3 0 chr6 91434773 91435066 -90980176 - AluY SINE Alu -17 294 1 1770 189 0 0 chr6 91435286 91435588 -90979654 - AluJb SINE Alu -10 302 1 1535 177 25 11 chr6 91435877 91436154 -90979088 - AluJb SINE Alu -31 281 1 182 36 0 36 chr6 91436754 91436782 -90978460 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 268 327 20 10 chr6 91437852 91437953 -90977289 - MIR SINE MIR -6 256 155 682 141 94 0 chr6 91438068 91438196 -90977046 - MER3 DNA MER1_type 0 209 70 1501 158 60 21 chr6 91438218 91438626 -90976616 + MER67C LTR ERV1 175 501 -13 2202 65 25 0 chr6 91438626 91438954 -90976288 - AluY SINE Alu 0 335 1 603 206 0 53 chr6 91439021 91439152 -90976090 + FLAM_A SINE Alu 1 124 -18 318 274 140 17 chr6 91439992 91440171 -90975071 - MIR SINE MIR -54 208 8 * 403 305 144 39 chr6 91440124 91440429 -90974813 + L2 LINE L2 1781 2117 -1197 2050 190 33 24 chr6 91441236 91441319 -90973923 + MLT1C LTR MaLR 12 93 -374 2362 168 39 5 chr6 91441319 91441731 -90973511 + MSTB LTR MaLR 1 426 0 2050 190 33 24 chr6 91441731 91442099 -90973143 + MLT1C LTR MaLR 93 467 0 327 265 92 101 chr6 91442229 91442467 -90972775 + L2 LINE L2 2103 2338 -976 1751 210 37 17 chr6 91442805 91443418 -90971824 - MER67B LTR ERV1 0 514 29 487 161 25 0 chr6 91443450 91443531 -90971711 - MER67A LTR ERV1 -460 83 1 1111 281 141 47 chr6 91443857 91444059 -90971183 - L2 LINE L2 -6 3307 3125 2064 128 4 0 chr6 91444059 91444340 -90970902 + AluSx SINE Alu 1 282 -30 189 0 0 0 chr6 91444343 91444364 -90970878 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1111 281 141 47 chr6 91444364 91445155 -90970087 - L2 LINE L2 -189 3124 2205 211 316 35 0 chr6 91446163 91446220 -90969022 - L3 LINE CR1 -96 1481 1423 439 306 131 10 chr6 91446320 91446526 -90968716 + MIR SINE MIR 25 255 -7 706 121 0 0 chr6 91446924 91447023 -90968219 + AluSg/x SINE Alu 94 192 -120 279 233 214 19 chr6 91447655 91447758 -90967484 + L2 LINE L2 3190 3312 -1 2038 214 50 58 chr6 91447826 91447979 -90967263 - MLT1E LTR MaLR 0 593 440 1769 180 3 10 chr6 91447979 91448279 -90966963 + AluJb SINE Alu 1 298 -14 2038 214 50 58 chr6 91448279 91448723 -90966519 - MLT1E LTR MaLR -153 440 1 471 352 77 4 chr6 91448928 91449201 -90966041 - L3 LINE CR1 -204 1373 1081 3298 163 56 15 chr6 91450318 91450992 -90964250 - L1MB2 LINE L1 -2 6169 5468 1473 187 6 55 chr6 91450995 91451338 -90963904 + MLT1B LTR MaLR 3 328 -62 1588 197 5 50 chr6 91451448 91451890 -90963352 - L1MB2 LINE L1 -816 5330 4909 402 350 52 21 chr6 91452308 91452634 -90962608 + LTR16C LTR ERVL 156 491 0 306 269 0 0 chr6 91453568 91453635 -90961607 + MER5A DNA MER1_type 9 75 -114 839 209 6 23 chr6 91453635 91453807 -90961435 + FRAM SINE Alu 1 166 -10 209 299 149 47 chr6 91453807 91453914 -90961328 + MER5A DNA MER1_type 66 183 -6 421 258 72 14 chr6 91454035 91454184 -90961058 + MER20B DNA MER1_type 56 215 -4 306 272 12 0 chr6 91454191 91454272 -90960970 + MIR3 SINE MIR 122 203 -5 1736 143 65 7 chr6 91455706 91456000 -90959242 - AluSx SINE Alu -1 311 1 296 94 0 19 chr6 91456156 91456209 -90959033 - Alu SINE Alu -2 298 247 1731 150 4 8 chr6 91456309 91456576 -90958666 - AluSx SINE Alu -34 278 13 457 111 0 0 chr6 91456804 91456876 -90958366 - L1PA5 LINE L1 0 6154 6083 293 241 63 52 chr6 91457248 91457422 -90957820 + L1M4 LINE L1 4599 4774 -1372 1840 161 14 3 chr6 91457885 91458177 -90957065 - AluJo SINE Alu -10 302 8 774 184 60 12 chr6 91458178 91458346 -90956896 - MLT1E3 LTR MaLR -448 176 1 187 333 45 53 chr6 91458997 91459129 -90956113 + L2 LINE L2 2913 3043 -229 2016 171 17 0 chr6 91460049 91460401 -90954841 + L1PA16 LINE L1 5806 6163 -3 2822 214 60 39 chr6 91460525 91460721 -90954521 + L1MEc LINE L1 2149 2339 -3876 2018 130 41 3 chr6 91460721 91461014 -90954228 + AluSx SINE Alu 1 304 -8 2822 214 60 39 chr6 91461014 91461855 -90953387 + L1MEc LINE L1 2339 3164 -3051 1605 231 78 71 chr6 91461873 91461924 -90953318 + L1M4 LINE L1 4442 4491 -1655 1561 143 103 11 chr6 91461924 91462197 -90953045 + AluJb SINE Alu 1 298 -14 1605 231 78 71 chr6 91462197 91462908 -90952334 + L1M4 LINE L1 4491 5213 -933 1391 142 36 0 chr6 91462908 91463127 -90952115 + MER30 DNA MER1_type 4 230 0 1605 231 78 71 chr6 91463127 91463185 -90952057 + L1M4 LINE L1 5213 5269 -877 21 36 0 0 chr6 91463292 91463320 -90951922 + AT_rich Low_complexity Low_complexity 1 28 0 892 138 125 107 chr6 91463357 91463581 -90951661 + AluSg/x SINE Alu 85 312 0 421 257 9 18 chr6 91463666 91463775 -90951467 + MER81 DNA DNA 2 109 -5 882 223 66 75 chr6 91463792 91464231 -90951011 - L1MC5 LINE L1 -221 7740 7306 3059 96 2 7 chr6 91464428 91464864 -90950378 + L1PA10 LINE L1 5730 6163 -5 2259 121 0 3 chr6 91465159 91465472 -90949770 + AluSx SINE Alu 1 312 0 405 213 110 29 chr6 91465700 91465836 -90949406 + L1MC5 LINE L1 7761 7907 -54 21 0 0 0 chr6 91465845 91465866 -90949376 + AT_rich Low_complexity Low_complexity 1 21 0 1170 201 0 39 chr6 91466542 91466771 -90948471 + AluJo SINE Alu 84 303 -9 975 145 12 24 chr6 91466901 91467067 -90948175 + AluJo SINE Alu 126 289 -23 1840 172 82 3 chr6 91467075 91467465 -90947777 - L1MC2 LINE L1 -14 6330 5910 1325 189 99 59 chr6 91467468 91467843 -90947399 - MLT1B LTR MaLR 0 390 1 1177 154 113 131 chr6 91467845 91468052 -90947190 - MLT1B-int LTR MaLR -2 1733 1524 2028 144 3 0 chr6 91468052 91468344 -90946898 + AluSx SINE Alu 1 293 -19 1177 154 113 131 chr6 91468344 91468421 -90946821 - MLT1B-int LTR MaLR -211 1524 1447 2137 122 0 14 chr6 91468421 91468715 -90946527 + AluSx SINE Alu 1 290 -22 1177 154 113 131 chr6 91468715 91468819 -90946423 - MLT1B-int LTR MaLR -288 1447 1351 2218 109 0 10 chr6 91468819 91469121 -90946121 + AluSp SINE Alu 1 299 -14 356 211 0 0 chr6 91469356 91469427 -90945815 - MLT1B-int LTR MaLR -968 767 697 2149 191 31 4 chr6 91469568 91470163 -90945079 - MLT1B-int LTR MaLR -639 732 1 1065 179 5 0 chr6 91470197 91470393 -90944849 - MLT1B LTR MaLR 0 390 194 206 103 0 26 chr6 91470394 91470433 -90944809 + (GGGAGA)n Simple_repeat Simple_repeat 4 41 0 1848 150 7 26 chr6 91470481 91470788 -90944454 - AluJo SINE Alu -11 301 1 565 158 164 0 chr6 91470794 91470940 -90944302 - MLT1B LTR MaLR -220 170 1 3058 235 51 18 chr6 91470940 91471028 -90944214 - L1MC2 LINE L1 -433 5911 5827 2135 139 0 3 chr6 91471028 91471329 -90943913 - AluSx SINE Alu -12 300 1 3058 235 51 18 chr6 91471329 91471979 -90943263 - L1MC2 LINE L1 -517 5827 5200 1487 171 106 18 chr6 91471979 91472253 -90942989 - AluJo SINE Alu -14 298 1 3058 235 51 18 chr6 91472253 91472663 -90942579 - L1MC2 LINE L1 -1144 5200 4805 2036 139 0 7 chr6 91472663 91472950 -90942292 - AluSx SINE Alu -16 296 12 3058 235 51 18 chr6 91472950 91473302 -90941940 - L1MC2 LINE L1 -1539 4805 4362 583 182 8 50 chr6 91473321 91473442 -90941800 + FLAM_A SINE Alu 13 128 -14 1609 213 33 86 chr6 91473442 91474047 -90941195 - L1MC2 LINE L1 -1787 4359 3787 2225 97 0 13 chr6 91474075 91474373 -90940869 - AluSg1 SINE Alu -15 294 1 39767 61 5 1 chr6 91474611 91480740 -90934502 + L1PA5 LINE L1 11 6154 0 1542 228 10 0 chr6 91480760 91481050 -90934192 + AluJb SINE Alu 1 293 -19 2064 125 38 49 chr6 91481731 91482099 -90933143 + THE1B LTR MaLR 1 364 0 2252 157 17 15 chr6 91482252 91482661 -90932581 - MLT2D LTR ERVL -4 410 1 285 279 23 44 chr6 91483116 91483226 -90932016 + MIR SINE MIR 19 126 -82 870 154 0 118 chr6 91483272 91483493 -90931749 + MER20 DNA MER1_type 2 196 -23 532 255 60 50 chr6 91484635 91484835 -90930407 - MIR SINE MIR -12 250 49 1721 167 28 7 chr6 91484938 91485226 -90930016 - AluJo SINE Alu -18 294 1 229 270 0 0 chr6 91485529 91485592 -90929650 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 414 259 7 14 chr6 91485708 91485851 -90929391 - L1MC/D LINE L1 -1985 5823 5682 322 333 71 22 chr6 91485870 91486053 -90929189 + L2 LINE L2 2462 2653 -661 335 199 23 99 chr6 91486300 91486431 -90928811 - Charlie8 DNA MER1_type -2190 227 107 2283 105 0 16 chr6 91486671 91486976 -90928266 + AluSx SINE Alu 1 300 -12 550 333 38 9 chr6 91487117 91487327 -90927915 - MIR SINE MIR -15 247 32 261 329 143 55 chr6 91487905 91488142 -90927100 - L2 LINE L2 -1 3271 3014 1413 169 41 48 chr6 91489270 91489560 -90925682 + AluJo SINE Alu 1 288 -24 22 0 0 0 chr6 91489567 91489589 -90925653 + AT_rich Low_complexity Low_complexity 1 22 0 355 283 189 19 chr6 91489870 91490029 -90925213 - MIR3 SINE MIR -6 202 17 245 286 0 14 chr6 91490060 91490130 -90925112 - L2 LINE L2 -17 3255 3187 877 166 40 89 chr6 91490265 91490512 -90924730 - MER8 DNA MER2_type -1 238 4 246 32 0 0 chr6 91490666 91490697 -90924545 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 334 348 0 0 chr6 91491324 91491442 -90923800 + C-rich Low_complexity Low_complexity 1 118 0 262 233 60 68 chr6 91492100 91492233 -90923009 + L1MC5 LINE L1 7762 7893 -68 260 206 192 0 chr6 91494116 91494189 -90921053 - MIR3 SINE MIR -14 194 108 1547 147 80 31 chr6 91494436 91494722 -90920520 - AluJb SINE Alu -12 300 1 2084 109 10 0 chr6 91494758 91495052 -90920190 - AluSx SINE Alu -12 300 4 1280 217 70 107 chr6 91495126 91495233 -90920009 - MLT1D LTR MaLR 0 505 396 2469 62 0 7 chr6 91495233 91495540 -90919702 + AluY SINE Alu 1 305 -6 1280 217 70 107 chr6 91495540 91495916 -90919326 - MLT1D LTR MaLR -109 396 40 376 313 178 24 chr6 91496019 91496227 -90919015 - MIR SINE MIR -10 252 13 818 269 15 35 chr6 91497708 91497968 -90917274 - MIR SINE MIR 0 262 8 354 165 0 25 chr6 91498952 91499031 -90916211 + AluSc SINE Alu 223 299 0 749 194 36 77 chr6 91499241 91499437 -90915805 - MER5A DNA MER1_type -1 188 1 195 42 0 0 chr6 91500407 91500431 -90914811 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 335 115 33 0 chr6 91500431 91500468 -90914774 + C-rich Low_complexity Low_complexity 5 66 0 1686 154 48 18 chr6 91500470 91500742 -90914500 - AluJo SINE Alu -32 280 1 217 200 0 0 chr6 91504742 91504782 -90910460 + L2 LINE L2 3272 3311 -2 2218 100 10 7 chr6 91505114 91505413 -90909829 - AluSg SINE Alu -10 300 1 715 163 14 78 chr6 91505508 91505649 -90909593 - FLAM_C SINE Alu -11 132 1 926 182 12 24 chr6 91506094 91506264 -90908978 - FRAM SINE Alu -10 166 1 261 0 0 0 chr6 91506270 91506299 -90908943 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr6 91506605 91506633 -90908609 + AT_rich Low_complexity Low_complexity 1 28 0 1679 224 22 3 chr6 91506746 91507104 -90908138 - MLT1A1 LTR MaLR 0 365 1 259 336 47 19 chr6 91507183 91507290 -90907952 - L3 LINE CR1 -1 1576 1467 27 29 0 0 chr6 91507896 91507930 -90907312 + AT_rich Low_complexity Low_complexity 1 34 0 1668 167 7 14 chr6 91507930 91508205 -90907037 - AluJb SINE Alu -39 273 1 1125 192 28 115 chr6 91508428 91508819 -90906423 - MLT1A2 LTR MaLR -17 357 1 4679 60 1 0 chr6 91511415 91512066 -90903176 - L1PA5 LINE L1 -2580 3566 2915 14679 44 1 4 chr6 91512067 91514654 -90900588 + L1PA5 LINE L1 3559 6152 -2 231 326 93 39 chr6 91515524 91515653 -90899589 - L2 LINE L2 -838 2476 2341 281 133 53 13 chr6 91515831 91515906 -90899336 + CT-rich Low_complexity Low_complexity 2 79 0 397 288 166 30 chr6 91515908 91516269 -90898973 - HAL1 LINE L1 -1218 1289 880 259 264 0 18 chr6 91516273 91516383 -90898859 + CT-rich Low_complexity Low_complexity 4 111 0 630 138 44 19 chr6 91516407 91516566 -90898676 + CT-rich Low_complexity Low_complexity 1 163 0 1612 198 13 16 chr6 91516566 91516869 -90898373 - AluJb SINE Alu -10 302 1 1027 147 30 200 chr6 91517775 91518158 -90897084 + Charlie1b DNA MER1_type 14 268 -2493 1865 137 10 34 chr6 91518158 91518451 -90896791 - AluSx SINE Alu -26 286 1 1027 147 30 200 chr6 91518451 91518666 -90896576 + Charlie1b DNA MER1_type 268 518 -5 754 31 21 0 chr6 91518910 91519006 -90896236 + L1PA4 LINE L1 6058 6155 0 299 91 0 0 chr6 91519714 91519758 -90895484 - Alu SINE Alu -10 291 248 2480 149 8 25 chr6 91519878 91520355 -90894887 + L1MA7 LINE L1 5591 6059 -232 18648 50 10 0 chr6 91520369 91523532 -90891710 - L1PA5 LINE L1 -9 6145 2960 11992 52 1 10 chr6 91523532 91525156 -90890086 + L1PA5 LINE L1 1336 2945 -3201 375 190 0 0 chr6 91525151 91525230 -90890012 + L1MA7 LINE L1 6046 6124 -167 * 32180 101 13 33 chr6 91525293 91531569 -90883673 + L1PA5 LINE L1 12 6153 -1 23 0 0 0 chr6 91531690 91531713 -90883529 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr6 91532516 91532548 -90882694 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 91532636 91532660 -90882582 + AT_rich Low_complexity Low_complexity 1 24 0 253 95 32 32 chr6 91533833 91533896 -90881346 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 254 274 34 77 chr6 91534291 91534408 -90880834 + MIR SINE MIR 65 176 -86 300 188 174 0 chr6 91534448 91534517 -90880725 - L2 LINE L2 -1 3312 3232 570 67 0 0 chr6 91535262 91535337 -90879905 + (GA)n Simple_repeat Simple_repeat 2 76 0 1837 164 0 25 chr6 91536324 91536641 -90878601 + AluJo SINE Alu 1 309 -3 24 0 0 0 chr6 91537079 91537103 -90878139 + AT_rich Low_complexity Low_complexity 1 24 0 541 280 80 97 chr6 91538006 91538596 -90876646 + MER21B LTR ERV1 60 639 -224 203 246 18 0 chr6 91539890 91539947 -90875295 + (CA)n Simple_repeat Simple_repeat 2 59 0 1649 209 3 10 chr6 91539984 91540285 -90874957 - AluJo SINE Alu -13 299 1 1447 177 7 69 chr6 91540668 91540973 -90874269 + AluJo SINE Alu 5 290 -22 6125 198 43 52 chr6 91540989 91541376 -90873866 + L1MB7 LINE L1 3497 3886 -2260 4447 168 77 13 chr6 91541376 91542223 -90873019 - MER54A LTR ERVL 0 901 1 6125 198 43 52 chr6 91542223 91543257 -90871985 + L1MB7 LINE L1 3886 4900 -1246 1492 187 0 103 chr6 91543257 91543605 -90871637 - AluJb SINE Alu 0 312 1 6125 198 43 52 chr6 91543605 91544037 -90871205 + L1MB7 LINE L1 4900 5334 -812 1538 173 75 54 chr6 91544039 91544591 -90870651 + MER34B LTR ERV1 11 565 0 2438 173 52 9 chr6 91544594 91545136 -90870106 + L1MB7 LINE L1 5336 5900 -284 718 158 89 47 chr6 91545137 91545327 -90869915 + L1MB7 LINE L1 5986 6183 -1 725 270 32 61 chr6 91545594 91545938 -90869304 + MER93b LTR ERV1 12 345 -28 1188 212 43 0 chr6 91545938 91546169 -90869073 - AluJo SINE Alu -71 241 1 243 95 0 0 chr6 91546170 91546212 -90869030 + MER57A LTR ERV1 362 403 0 6870 35 10 0 chr6 91546288 91547411 -90867831 + L1PA5 LINE L1 4985 6117 -37 306 0 0 0 chr6 91547417 91547451 -90867791 + (TAA)n Simple_repeat Simple_repeat 3 36 0 2237 109 54 20 chr6 91548567 91548917 -90866325 + THE1B LTR MaLR 1 362 -2 9692 106 58 17 chr6 91548922 91550051 -90865191 + THE1B-int LTR MaLR 3 1211 -369 2266 106 0 0 chr6 91550051 91550343 -90864899 - AluSc SINE Alu -17 292 1 9692 106 58 17 chr6 91550343 91550729 -90864513 + THE1B-int LTR MaLR 1211 1580 0 2201 105 78 20 chr6 91550729 91551073 -90864169 + THE1B LTR MaLR 1 364 0 1939 130 7 19 chr6 91551185 91551492 -90863750 - AluSx SINE Alu -9 303 1 7384 32 0 0 chr6 91552088 91552981 -90862261 + L1P LINE L1 4337 5229 -917 22 35 0 0 chr6 91553318 91553347 -90861895 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chr6 91553605 91553641 -90861601 + AT_rich Low_complexity Low_complexity 1 36 0 243 132 94 0 chr6 91554422 91554475 -90860767 - HsTC2 DNA Tc2 -611 1287 1230 * 357 263 0 0 chr6 91554470 91554546 -90860696 - HsTC2 DNA Tc2 -1772 126 51 1473 234 87 61 chr6 91555221 91555729 -90859513 + MER68 LTR ERV1 1 521 -41 783 269 84 59 chr6 91555784 91556189 -90859053 - L2 LINE L2 0 3313 2899 32 95 0 0 chr6 91556281 91556376 -90858866 + AT_rich Low_complexity Low_complexity 1 95 0 487 185 289 7 chr6 91556509 91556644 -90858598 - LTR16A LTR ERVL 0 450 278 4216 174 42 41 chr6 91556655 91558147 -90857095 - L1MB7 LINE L1 -1 6183 4674 427 302 0 9 chr6 91558153 91558269 -90856973 - LTR16A LTR ERVL -306 144 30 1095 276 127 16 chr6 91558567 91558999 -90856243 + L2 LINE L2 2832 3311 -2 180 0 0 0 chr6 91559309 91559329 -90855913 + (GA)n Simple_repeat Simple_repeat 1 20 0 523 303 69 11 chr6 91559794 91559982 -90855260 + MIR SINE MIR 48 246 -16 308 318 45 50 chr6 91561758 91561959 -90853283 + L2 LINE L2 2560 2759 -555 266 282 128 39 chr6 91562187 91562343 -90852899 + L2 LINE L2 3101 3270 -2 288 300 44 11 chr6 91563228 91563318 -90851924 - MIR3 SINE MIR -6 202 110 181 234 0 0 chr6 91563488 91563535 -90851707 - MIR SINE MIR -6 256 210 298 204 0 91 chr6 91563544 91563632 -90851610 + MER116 DNA Mariner 1 80 0 616 246 170 0 chr6 91563633 91563804 -90851438 - MIR SINE MIR -59 203 4 1526 185 0 68 chr6 91564167 91564491 -90850751 + AluJo SINE Alu 1 302 -10 2343 87 3 7 chr6 91564780 91565090 -90850152 - AluSc SINE Alu 0 309 1 25 31 0 0 chr6 91566127 91566159 -90849083 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 91566428 91566452 -90848790 + AT_rich Low_complexity Low_complexity 1 24 0 698 177 7 48 chr6 91566922 91567069 -90848173 - AluSq/x SINE Alu -172 141 1 22 0 0 0 chr6 91569852 91569874 -90845368 + AT_rich Low_complexity Low_complexity 1 22 0 845 171 20 0 chr6 91569877 91570029 -90845213 - L1PA16 LINE L1 -9 6157 6003 231 157 39 0 chr6 91571204 91571255 -90843987 + (ATG)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr6 91571317 91571347 -90843895 + AT_rich Low_complexity Low_complexity 1 30 0 249 234 0 0 chr6 91572447 91572511 -90842731 + (TGG)n Simple_repeat Simple_repeat 3 66 0 223 167 0 0 chr6 91572511 91572553 -90842689 + (CAG)n Simple_repeat Simple_repeat 1 42 0 26 50 0 0 chr6 91573732 91573772 -90841470 + AT_rich Low_complexity Low_complexity 1 40 0 380 273 122 0 chr6 91574665 91574804 -90840438 - MER103 DNA DNA -9 157 2 815 219 0 0 chr6 91574999 91575159 -90840083 - FRAM SINE Alu -16 160 1 323 291 52 99 chr6 91575467 91575567 -90839675 - MIR SINE MIR -57 205 119 625 119 90 22 chr6 91575567 91575701 -90839541 + L1MA8 LINE L1 6142 6284 -7 323 291 52 99 chr6 91575701 91575813 -90839429 - MIR SINE MIR -143 119 3 283 264 104 24 chr6 91576166 91576291 -90838951 + MLT1F1 LTR MaLR 379 513 -54 22 35 0 0 chr6 91577142 91577171 -90838071 + AT_rich Low_complexity Low_complexity 1 29 0 421 297 9 0 chr6 91578455 91578566 -90836676 - MIR3 SINE MIR -10 198 87 1750 159 14 3 chr6 91578735 91579024 -90836218 - AluJo SINE Alu -20 292 1 237 188 21 0 chr6 91580702 91580750 -90834492 - MIR3 SINE MIR -10 198 150 23 33 0 0 chr6 91581175 91581205 -90834037 + AT_rich Low_complexity Low_complexity 1 30 0 202 262 0 0 chr6 91581743 91581785 -90833457 - MER91A DNA MER1_type -15 181 140 1141 85 37 0 chr6 91581785 91581949 -90833293 + L1PA8 LINE L1 6000 6169 -3 891 169 36 100 chr6 91582143 91582335 -90832907 + MER65-int LTR ERV1 1493 1663 -3208 525 236 47 8 chr6 91582335 91582462 -90832780 - FLAM_A SINE Alu 0 133 2 891 169 36 100 chr6 91582462 91582548 -90832694 + MER65-int LTR ERV1 1663 1753 -3118 338 292 160 35 chr6 91582612 91582756 -90832486 - MER91A DNA MER1_type -34 162 1 22 35 0 0 chr6 91583012 91583041 -90832201 + AT_rich Low_complexity Low_complexity 1 29 0 1372 220 33 61 chr6 91583449 91583909 -90831333 + LTR37B LTR ERV1 22 468 0 35 41 0 0 chr6 91583977 91584026 -90831216 + AT_rich Low_complexity Low_complexity 1 49 0 930 246 15 5 chr6 91584898 91585101 -90830141 - MER58A DNA MER1_type 0 224 20 258 89 22 22 chr6 91585104 91585149 -90830093 - LTR37B LTR ERV1 -213 255 211 357 297 216 0 chr6 91585400 91585548 -90829694 + MER5A DNA MER1_type 10 189 0 333 0 0 0 chr6 91586270 91586307 -90828935 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr6 91586944 91586983 -90828259 + AT_rich Low_complexity Low_complexity 1 39 0 3196 145 16 11 chr6 91588991 91589549 -90825693 + L1MB3 LINE L1 5587 6147 -36 396 71 0 0 chr6 91589651 91589707 -90825535 + (TA)n Simple_repeat Simple_repeat 2 57 0 2319 50 0 78 chr6 91590639 91590961 -90824281 - AluY SINE Alu -14 297 1 2169 85 0 60 chr6 91591534 91591853 -90823389 + AluSx SINE Alu 1 300 -12 217 371 68 8 chr6 91592132 91592264 -90822978 + L2 LINE L2 3134 3273 -40 185 273 40 40 chr6 91592513 91592612 -90822630 - MIR SINE MIR -142 120 22 30 27 0 0 chr6 91596529 91596566 -90818676 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 91597544 91597565 -90817677 + AT_rich Low_complexity Low_complexity 1 21 0 219 69 0 0 chr6 91597628 91597657 -90817585 + (ATG)n Simple_repeat Simple_repeat 1 29 0 278 0 54 0 chr6 91597933 91597970 -90817272 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2181 67 40 14 chr6 91599646 91599943 -90815299 - AluY SINE Alu -6 305 1 22 0 0 0 chr6 91599951 91599973 -90815269 + AT_rich Low_complexity Low_complexity 1 22 0 343 145 0 16 chr6 91599989 91600051 -90815191 - L1PA15 LINE L1 -21 6144 6084 1526 122 9 0 chr6 91600052 91600281 -90814961 - L1PA15 LINE L1 -159 6006 5776 722 268 117 25 chr6 91602704 91603099 -90812143 - L1MC4a LINE L1 -1791 6017 5587 204 337 31 41 chr6 91603238 91603336 -90811906 - MIR3 SINE MIR -23 185 89 888 146 84 56 chr6 91603512 91603725 -90811517 - MER20 DNA MER1_type 0 219 1 9554 179 25 5 chr6 91603832 91606791 -90808451 - L1PA16 LINE L1 -8 6809 3797 14801 186 40 14 chr6 91606796 91607160 -90808082 - L1PB1 LINE L1 -3 6864 6511 222 37 0 0 chr6 91607160 91607187 -90808055 + (TA)n Simple_repeat Simple_repeat 2 28 0 14801 186 40 14 chr6 91607187 91612850 -90802392 - L1PB1 LINE L1 -356 6511 496 1609 45 5 0 chr6 91612850 91613052 -90802190 + L1PA4 LINE L1 5950 6152 -3 14801 186 40 14 chr6 91613052 91613555 -90801687 - L1PB1 LINE L1 -6371 496 7 5882 229 20 18 chr6 91613574 91615930 -90799312 - L1PA16 LINE L1 -2988 3809 1391 254 280 82 57 chr6 91616757 91617036 -90798206 - L1PA16 LINE L1 -5268 1519 1234 443 338 0 66 chr6 91617107 91617305 -90797937 - L1PA16 LINE L1 -6601 186 2 229 162 0 0 chr6 91617507 91617544 -90797698 - tRNA-Met-e tRNA tRNA -38 37 1 23 0 0 0 chr6 91617557 91617580 -90797662 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr6 91618426 91618454 -90796788 + AT_rich Low_complexity Low_complexity 1 28 0 485 335 4 63 chr6 91619679 91619918 -90795324 + L3 LINE CR1 1349 1573 -4 21 0 0 0 chr6 91619990 91620011 -90795231 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 91621119 91621141 -90794101 + AT_rich Low_complexity Low_complexity 1 22 0 7371 42 1 0 chr6 91621141 91622528 -90792714 - L1PA5 LINE L1 -11 6143 4756 731 245 13 0 chr6 91623925 91624084 -90791158 + MER5A DNA MER1_type 1 161 -28 1846 132 3 7 chr6 91624209 91624504 -90790738 - L1MC1 LINE L1 -17 6596 6303 1866 143 0 14 chr6 91624505 91624784 -90790458 + AluJo SINE Alu 1 275 -37 854 140 85 6 chr6 91624794 91624958 -90790284 - L1MC1 LINE L1 -369 6255 6079 * 6393 218 40 10 chr6 91624956 91626592 -90788650 - L1MC1 LINE L1 -777 5649 3964 21 0 0 0 chr6 91626622 91626643 -90788599 + AT_rich Low_complexity Low_complexity 1 21 0 830 193 40 11 chr6 91626718 91626894 -90788348 - MSTD LTR MaLR 0 396 216 477 198 44 0 chr6 91626907 91626998 -90788244 - MSTD LTR MaLR -333 95 1 2294 237 83 23 chr6 91626999 91628041 -90787201 - L1ME1 LINE L1 -112 6054 4965 1943 241 82 36 chr6 91628045 91628515 -90786727 - MLT1F1 LTR MaLR -8 559 60 1860 144 3 28 chr6 91628515 91628829 -90786413 - AluSx SINE Alu 0 307 1 1943 241 82 36 chr6 91628829 91628883 -90786359 - MLT1F1 LTR MaLR -507 60 10 324 191 22 56 chr6 91628891 91628980 -90786262 - L1ME1 LINE L1 -1177 4969 4884 2232 104 3 0 chr6 91629369 91629658 -90785584 - AluSx SINE Alu -22 290 1 8222 174 63 23 chr6 91629660 91633377 -90781865 - L1MC1 LINE L1 -2451 3975 20 503 281 120 23 chr6 91633402 91633619 -90781623 + HERVL LTR ERVL 1949 2186 -3468 2307 311 79 32 chr6 91633624 91635200 -90780042 + HERVL LTR ERVL 2364 4045 -1719 976 288 72 25 chr6 91635256 91635667 -90779575 + HERVL LTR ERVL 4121 4567 -918 1942 117 13 52 chr6 91636711 91637019 -90778223 - AluSx SINE Alu -16 296 1 928 151 0 0 chr6 91637032 91637191 -90778051 - L1MD1 LINE L1 -5 6237 6079 2096 110 10 0 chr6 91637268 91637595 -90777647 + AluY SINE Alu 1 311 0 1758 161 10 26 chr6 91638358 91638668 -90776574 - AluJo SINE Alu -3 309 5 24 0 0 0 chr6 91639677 91639701 -90775541 + AT_rich Low_complexity Low_complexity 1 24 0 1478 155 12 102 chr6 91639721 91640044 -90775198 - AluJo SINE Alu -18 294 1 31 44 0 0 chr6 91641134 91641179 -90774063 + AT_rich Low_complexity Low_complexity 1 45 0 15724 112 28 5 chr6 91641801 91644163 -90771079 + Tigger1 DNA MER2_type 1 2417 -1 181 246 156 82 chr6 91644772 91644894 -90770348 + L2 LINE L2 3158 3288 -25 2209 185 54 38 chr6 91645991 91646569 -90768673 + Charlie1 DNA MER1_type 2064 2650 -111 990 41 0 0 chr6 91646583 91646704 -90768538 - L1PA5 LINE L1 -6 6148 6028 6574 37 2 0 chr6 91646704 91647678 -90767564 + L1PA5 LINE L1 5075 6050 -104 397 198 178 0 chr6 91647678 91647779 -90767463 + Charlie1 DNA MER1_type 2642 2760 -1 1706 141 147 3 chr6 91647792 91648111 -90767131 - MER47A DNA MER2_type -1 365 1 240 250 0 0 chr6 91648111 91648159 -90767083 - L1ME LINE L1 -516 5646 5599 3965 202 67 68 chr6 91648429 91650394 -90764848 - L1ME2 LINE L1 -9 6224 4259 315 219 0 116 chr6 91650385 91650531 -90764711 - L1ME2 LINE L1 -6233 163 35 * 245 339 110 0 chr6 91651094 91651203 -90764039 + L2 LINE L2 2933 3053 -219 242 280 167 45 chr6 91651258 91651390 -90763852 + MIR SINE MIR 20 167 -95 334 371 46 26 chr6 91651444 91651595 -90763647 + L2 LINE L2 3101 3254 -18 1519 194 70 12 chr6 91652123 91652464 -90762778 + MLT1A1 LTR MaLR 1 361 -4 383 195 78 31 chr6 91653025 91653083 -90762159 + MLT1L LTR MaLR 482 536 -79 2116 115 0 29 chr6 91653083 91653396 -90761846 + AluSx SINE Alu 1 304 -8 383 195 78 31 chr6 91653396 91653465 -90761777 + MLT1L LTR MaLR 536 615 0 182 231 0 0 chr6 91653502 91653541 -90761701 + L3 LINE CR1 1532 1570 -7 22 0 0 0 chr6 91653745 91653767 -90761475 + AT_rich Low_complexity Low_complexity 1 22 0 549 269 90 24 chr6 91654547 91654759 -90760483 + MIR SINE MIR 5 230 -32 297 0 0 0 chr6 91654768 91654801 -90760441 + (CA)n Simple_repeat Simple_repeat 2 34 0 929 155 5 15 chr6 91654849 91655069 -90760173 + AluJo SINE Alu 45 300 -12 1665 268 61 27 chr6 91655094 91655960 -90759282 - L2 LINE L2 0 3313 2429 218 338 70 0 chr6 91656575 91656646 -90758596 + MIR SINE MIR 76 151 -111 282 312 0 0 chr6 91657903 91657980 -90757262 - MER2 DNA MER2_type 0 345 269 1154 174 14 0 chr6 91658029 91658236 -90757006 - MER2 DNA MER2_type -135 210 1 882 170 30 12 chr6 91659604 91659769 -90755473 - MER20 DNA MER1_type -4 215 48 380 185 0 25 chr6 91660071 91660152 -90755090 - MER116 DNA Mariner -1 79 1 1858 161 44 10 chr6 91661110 91661290 -90753952 - AluJb SINE Alu -4 308 113 221 75 25 0 chr6 91661290 91661330 -90753912 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 1858 161 44 10 chr6 91661330 91661447 -90753795 - AluJb SINE Alu -199 113 1 24 0 0 0 chr6 91661502 91661526 -90753716 + AT_rich Low_complexity Low_complexity 1 24 0 1882 36 0 0 chr6 91661526 91661750 -90753492 - L1PA3 LINE L1 -3 6152 5929 463 359 100 12 chr6 91661896 91662223 -90753019 + L2 LINE L2 1830 2189 -1125 2369 182 21 2 chr6 91662223 91662641 -90752601 + MSTB LTR MaLR 1 426 0 463 359 100 12 chr6 91662641 91662653 -90752589 + L2 LINE L2 2189 2199 -1115 251 340 158 14 chr6 91662676 91663038 -90752204 + L2 LINE L2 2310 2723 -591 809 205 25 0 chr6 91663087 91663248 -90751994 + MER105 DNA DNA 39 203 -1 250 346 94 55 chr6 91663254 91663583 -90751659 + L2 LINE L2 2826 3167 -105 454 293 48 27 chr6 91664857 91665045 -90750197 + L2 LINE L2 3117 3308 -5 22 0 0 0 chr6 91665904 91665926 -90749316 + AT_rich Low_complexity Low_complexity 1 22 0 1155 262 89 38 chr6 91666509 91666959 -90748283 - L2 LINE L2 -518 2796 2324 260 355 98 41 chr6 91667026 91667344 -90747898 + L2 LINE L2 2472 2807 -507 261 291 41 127 chr6 91667392 91667445 -90747797 + L2 LINE L2 2976 3032 -240 1900 129 0 4 chr6 91667445 91667709 -90747533 - AluSc SINE Alu -12 297 35 261 291 41 127 chr6 91667709 91667899 -90747343 + L2 LINE L2 3032 3198 -74 1998 131 0 0 chr6 91671192 91671467 -90743775 + AluSx SINE Alu 20 294 -18 334 316 29 29 chr6 91671489 91671625 -90743617 - MIR SINE MIR -57 151 16 397 211 229 9 chr6 91671881 91671990 -90743252 - FLAM_A SINE Alu 0 133 1 565 282 119 15 chr6 91672082 91672284 -90742958 + MIR SINE MIR 20 242 -20 21 0 0 0 chr6 91672388 91672409 -90742833 + AT_rich Low_complexity Low_complexity 1 21 0 386 324 29 0 chr6 91672835 91672974 -90742268 + MER117 DNA MER1_type 2 144 -53 631 302 85 0 chr6 91673083 91673341 -90741901 + MLT1J2 LTR MaLR 15 294 -156 2111 139 0 16 chr6 91673930 91674247 -90740995 + AluSx SINE Alu 1 312 0 308 284 121 0 chr6 91674478 91674619 -90740623 - L1ME LINE L1 -452 5669 5512 222 309 73 15 chr6 91675338 91675406 -90739836 + MIR3 SINE MIR 103 174 -34 411 349 20 7 chr6 91675711 91675860 -90739382 + L2 LINE L2 3161 3311 -2 21 0 0 0 chr6 91675933 91675954 -90739288 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr6 91676265 91676307 -90738935 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 244 85 61 chr6 91676779 91676861 -90738381 - L2 LINE L2 -6 3266 3183 21 36 0 0 chr6 91676988 91677016 -90738226 + AT_rich Low_complexity Low_complexity 1 28 0 904 281 29 62 chr6 91677178 91677658 -90737584 + L1MEd LINE L1 311 774 -5598 676 278 130 0 chr6 91677658 91677957 -90737285 - MER46C DNA MER2_type 0 338 1 936 254 97 37 chr6 91677972 91678723 -90736519 + L1MEd LINE L1 788 1631 -4862 232 195 98 24 chr6 91678786 91678868 -90736374 + L1MEd LINE L1 1559 1646 -4738 394 281 55 8 chr6 91679371 91679499 -90735743 - MIR SINE MIR -2 260 127 1426 174 93 4 chr6 91679556 91679838 -90735404 - AluJb SINE Alu 0 305 1 2334 80 3 10 chr6 91680385 91680686 -90734556 - AluSq SINE Alu -12 301 3 1873 115 21 21 chr6 91684477 91684764 -90730478 + AluSx SINE Alu 15 301 -11 194 169 141 14 chr6 91684802 91684873 -90730369 + MIR SINE MIR 182 261 -1 183 100 0 0 chr6 91686201 91686231 -90729011 + (CA)n Simple_repeat Simple_repeat 1 30 0 276 149 0 0 chr6 91686454 91686501 -90728741 + (TG)n Simple_repeat Simple_repeat 2 48 0 357 261 112 112 chr6 91687545 91688020 -90727222 + L1M2 LINE L1 653 1127 -5722 300 328 89 90 chr6 91688006 91688638 -90726604 + L1M2 LINE L1 481 1111 -5738 * 1834 224 42 12 chr6 91689242 91689747 -90725495 + L1ME1 LINE L1 5640 6159 -7 3025 234 49 23 chr6 91689763 91690053 -90725189 + L1M2 LINE L1 3028 3309 -3539 2336 79 0 32 chr6 91690053 91690369 -90724873 + AluY SINE Alu 1 306 -5 3025 234 49 23 chr6 91690369 91691121 -90724121 + L1M2 LINE L1 3309 4097 -2751 1716 129 85 4 chr6 91691893 91692165 -90723077 + AluSx SINE Alu 6 299 -13 802 174 15 0 chr6 91692244 91692376 -90722866 - AluJo SINE Alu -178 134 1 730 203 129 138 chr6 91692849 91693336 -90721906 + MLT1H1 LTR MaLR 65 547 -8 21 36 0 0 chr6 91693807 91693835 -90721407 + AT_rich Low_complexity Low_complexity 1 28 0 2738 80 11 19 chr6 91693886 91694262 -90720980 - THE1C LTR MaLR -2 373 1 346 364 13 26 chr6 91694324 91694478 -90720764 - MIR3 SINE MIR -49 159 8 741 296 12 12 chr6 91694578 91694821 -90720421 + MIR SINE MIR 8 250 -12 31 44 0 0 chr6 91694855 91694900 -90720342 + AT_rich Low_complexity Low_complexity 1 45 0 2061 104 0 34 chr6 91695089 91695409 -90719833 + AluSx SINE Alu 1 310 0 2161 128 0 0 chr6 91695964 91696268 -90718974 - AluSc SINE Alu -5 304 1 636 268 0 0 chr6 91696300 91696543 -90718699 + (TA)n Simple_repeat Simple_repeat 1 243 0 301 326 0 0 chr6 91696545 91696631 -90718611 - L1MC4 LINE L1 -1342 6700 6615 353 268 11 28 chr6 91696631 91696810 -90718432 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 270 308 0 0 chr6 91696825 91696932 -90718310 + (TA)n Simple_repeat Simple_repeat 2 108 0 320 294 0 22 chr6 91696944 91697036 -90718206 + L1MC4 LINE L1 6614 6703 -1339 307 254 16 16 chr6 91697036 91697158 -90718084 + (CATATA)n Simple_repeat Simple_repeat 6 127 0 225 262 71 0 chr6 91697158 91697242 -90718000 + L1MC4 LINE L1 6614 6703 -1339 2117 118 3 0 chr6 91698173 91698460 -90716782 + AluSx SINE Alu 21 308 -4 191 303 15 30 chr6 91700604 91700670 -90714572 + L2 LINE L2 3208 3272 0 198 0 0 0 chr6 91700801 91700823 -90714419 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2342 97 0 0 chr6 91701215 91701523 -90713719 + AluSq SINE Alu 1 308 -5 393 291 228 19 chr6 91701662 91701930 -90713312 - L2 LINE L2 -3 3310 2987 391 312 117 59 chr6 91701998 91702512 -90712730 + L2 LINE L2 2715 3271 -1 776 290 61 8 chr6 91702759 91703004 -90712238 + MLT1I LTR MaLR 5 262 -147 429 350 67 11 chr6 91703034 91703214 -90712028 + L2 LINE L2 2569 2758 -556 24 0 0 0 chr6 91703819 91703843 -90711399 + AT_rich Low_complexity Low_complexity 1 24 0 365 353 37 7 chr6 91704131 91704267 -90710975 - L3b LINE CR1 -37 1546 1407 2154 127 0 0 chr6 91704588 91704879 -90710363 + AluSg SINE Alu 5 295 -15 372 112 146 11 chr6 91704971 91705060 -90710182 + L1MA8 LINE L1 6186 6286 -5 21 0 0 0 chr6 91705528 91705549 -90709693 + AT_rich Low_complexity Low_complexity 1 21 0 261 309 55 18 chr6 91705784 91705894 -90709348 - L2 LINE L2 -5 3267 3154 251 344 0 10 chr6 91705905 91706001 -90709241 - MER5A DNA MER1_type -10 179 85 1029 128 26 0 chr6 91706518 91706674 -90708568 + AluSg/x SINE Alu 148 307 -5 2719 56 0 14 chr6 91707781 91708138 -90707104 + L1PA7 LINE L1 5798 6149 -5 327 228 81 27 chr6 91709745 91709894 -90705348 - L1ME4a LINE L1 -2 6119 5963 192 333 77 0 chr6 91710369 91710447 -90704795 - L2 LINE L2 -25 3247 3164 2048 145 123 75 chr6 91710459 91711084 -90704158 - MER39 LTR ERV1 -10 697 6 5887 106 36 0 chr6 91711529 91712497 -90702745 - L1PA13 LINE L1 -5 6158 5177 1635 156 21 0 chr6 91712506 91712795 -90702447 + L1MB5 LINE L1 5683 5977 -197 411 146 204 0 chr6 91712802 91712905 -90702337 - L1MC3 LINE L1 -159 7626 7503 1689 176 6 3 chr6 91712910 91713228 -90702014 - L1PA13 LINE L1 -959 5187 4869 243 0 0 0 chr6 91713808 91713835 -90701407 + (TG)n Simple_repeat Simple_repeat 2 28 0 2408 76 3 0 chr6 91713972 91714276 -90700966 - AluY SINE Alu -6 305 1 16761 152 29 34 chr6 91715491 91715669 -90699573 - L1MA2 LINE L1 0 7723 7546 2263 102 0 0 chr6 91715669 91715983 -90699259 + AluSq SINE Alu 1 314 0 16761 152 29 34 chr6 91715983 91716034 -90699208 - L1MA2 LINE L1 -177 7546 7496 2155 124 0 13 chr6 91716034 91716333 -90698909 + AluSx SINE Alu 1 295 -17 180 0 0 0 chr6 91716333 91716353 -90698889 + (TA)n Simple_repeat Simple_repeat 2 21 0 16761 152 29 34 chr6 91716353 91716401 -90698841 - L1MA2 LINE L1 -226 7497 7450 189 0 0 0 chr6 91716401 91716422 -90698820 + (TC)n Simple_repeat Simple_repeat 2 22 0 16761 152 29 34 chr6 91716422 91716518 -90698724 - L1MA2 LINE L1 -273 7450 7355 1798 153 0 4 chr6 91716518 91716792 -90698450 - AluSx SINE Alu -39 273 1 16761 152 29 34 chr6 91716792 91723394 -90691848 - L1MA2 LINE L1 -368 7355 238 232 215 0 15 chr6 91723706 91723771 -90691471 - L1MC4 LINE L1 -1340 6702 6639 8517 167 7 15 chr6 91724512 91726106 -90689136 + L1PB1 LINE L1 3556 5161 -990 384 126 0 115 chr6 91726106 91726192 -90689050 + L1PA10 LINE L1 6092 6168 0 8517 167 7 15 chr6 91726192 91726822 -90688420 + L1PB1 LINE L1 5161 5755 -396 1966 98 0 0 chr6 91726822 91727077 -90688165 + AluSg SINE Alu 55 309 -1 8517 167 7 15 chr6 91727077 91727466 -90687776 + L1PB1 LINE L1 5755 6146 -5 292 313 79 37 chr6 91727495 91728120 -90687122 + L1MEd LINE L1 908 1615 -875 1201 136 63 52 chr6 91728240 91728412 -90686830 - MER33 DNA MER1_type -2261 324 146 1267 201 78 39 chr6 91728412 91728696 -90686546 + AluJo SINE Alu 5 299 -13 1201 136 63 52 chr6 91728696 91728810 -90686432 - MER33 DNA MER1_type -2439 146 35 646 205 58 26 chr6 91728827 91729017 -90686225 + L1MC5 LINE L1 7330 7525 -436 251 274 90 65 chr6 91729098 91729299 -90685943 + L1ME3A LINE L1 5962 6167 -3 30 0 0 0 chr6 91729321 91729351 -90685891 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr6 91729435 91729491 -90685751 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr6 91729597 91729620 -90685622 + AT_rich Low_complexity Low_complexity 1 23 0 1402 157 8 57 chr6 91729717 91729965 -90685277 + AluSx SINE Alu 1 236 -76 418 311 48 4 chr6 91729965 91730238 -90685004 + L1MEd LINE L1 2466 2750 -3379 315 177 0 0 chr6 91730466 91730528 -90684714 + (TG)n Simple_repeat Simple_repeat 1 62 0 14288 196 55 24 chr6 91731096 91731165 -90684077 - L1 LINE L1 -756 6809 6744 4363 44 7 0 chr6 91731165 91731712 -90683530 - L1PA4 LINE L1 -4 6151 5601 14288 196 55 24 chr6 91731712 91735031 -90680211 - L1 LINE L1 -821 6744 3229 1357 109 85 5 chr6 91735031 91735242 -90680000 + MER30 DNA MER1_type 3 230 0 14288 196 55 24 chr6 91735242 91736617 -90678625 - L1 LINE L1 -4336 3229 1897 317 333 19 0 chr6 91736721 91736826 -90678416 - L1 LINE L1 -5501 1985 1879 1976 146 10 0 chr6 91737096 91737384 -90677858 + AluSx SINE Alu 1 291 -21 882 349 31 29 chr6 91737600 91738050 -90677192 - L1 LINE L1 -5503 1983 1533 300 231 240 10 chr6 91738658 91738762 -90676480 - MER5A DNA MER1_type -2 187 60 24 100 0 0 chr6 91739672 91739752 -90675490 + AT_rich Low_complexity Low_complexity 1 80 0 364 290 103 70 chr6 91740728 91741000 -90674242 + LTR16A LTR ERVL 92 372 -78 416 277 42 0 chr6 91741029 91741148 -90674094 + HERV16 LTR ERVL 7 130 -4866 234 137 20 20 chr6 91742372 91742423 -90672819 + MIR SINE MIR 88 138 -70 290 154 19 0 chr6 91742427 91742479 -90672763 + MER5B DNA MER1_type 2 54 -124 1904 230 65 73 chr6 91742482 91743532 -90671710 - L1ME3 LINE L1 -197 5965 4925 761 246 34 21 chr6 91743527 91743763 -90671479 - L1ME3 LINE L1 -2395 3751 3513 * 2375 114 22 6 chr6 91744647 91745005 -90670237 + THE1B LTR MaLR 1 364 0 45 75 0 0 chr6 91746484 91746578 -90668664 + AT_rich Low_complexity Low_complexity 1 94 0 424 351 90 16 chr6 91747359 91747681 -90667561 + L2 LINE L2 2538 2883 -431 327 25 0 0 chr6 91748320 91748360 -90666882 + (GA)n Simple_repeat Simple_repeat 1 40 0 1655 168 32 0 chr6 91748429 91748714 -90666528 - AluJb SINE Alu -18 294 1 997 139 0 23 chr6 91748714 91748886 -90666356 - FRAM SINE Alu 0 176 9 5808 118 20 5 chr6 91750238 91751637 -90663605 - L1PA14 LINE L1 -2 6159 4749 5155 87 4 0 chr6 91751801 91752737 -90662505 - L1PA6 LINE L1 -7 6147 5144 3831 220 38 60 chr6 91752852 91753768 -90661474 + L1MC1 LINE L1 3298 4168 -1978 1377 191 68 15 chr6 91753768 91754092 -90661150 + MER2 DNA MER2_type 1 341 -3 3831 220 38 60 chr6 91754092 91754568 -90660674 + L1MC1 LINE L1 4168 4653 -1493 1756 166 14 0 chr6 91754579 91754857 -90660385 + AluSx SINE Alu 1 282 -30 793 212 40 5 chr6 91754889 91755087 -90660155 + L1MC1 LINE L1 4648 4852 -1294 2109 165 49 32 chr6 91755092 91755632 -90659610 - MLT2A2 LTR ERVL 0 554 1 5878 181 21 11 chr6 91755634 91756893 -90658349 + L1MC1 LINE L1 4855 6100 -233 1548 171 91 4 chr6 91756893 91757167 -90658075 + AluJb SINE Alu 1 298 -14 5878 181 21 11 chr6 91757167 91757279 -90657963 + L1MC1 LINE L1 6100 6209 -124 348 24 0 0 chr6 91757279 91757320 -90657922 + (TG)n Simple_repeat Simple_repeat 1 41 0 5878 181 21 11 chr6 91757320 91757404 -90657838 + L1MC1 LINE L1 6209 6327 -6 217 105 26 53 chr6 91757889 91757965 -90657277 + (TATAA)n Simple_repeat Simple_repeat 5 78 0 408 333 12 37 chr6 91758035 91758197 -90657045 - MIR3 SINE MIR -15 193 36 21 0 0 0 chr6 91758330 91758351 -90656891 + AT_rich Low_complexity Low_complexity 1 21 0 1231 14 0 0 chr6 91758356 91758523 -90656719 - L1PA3 LINE L1 0 6155 6006 209 371 22 11 chr6 91759953 91760042 -90655200 + MIR3 SINE MIR 7 96 -112 692 282 30 38 chr6 91760874 91761136 -90654106 - MIR SINE MIR 0 262 3 189 0 0 0 chr6 91761181 91761202 -90654040 + (CAA)n Simple_repeat Simple_repeat 1 21 0 818 156 22 0 chr6 91761646 91761781 -90653461 - FAM SINE Alu -18 167 30 435 308 0 0 chr6 91762205 91762322 -90652920 - MER94 DNA DNA -16 118 2 236 224 0 0 chr6 91763055 91763104 -90652138 + L2 LINE L2 3265 3313 0 2632 58 0 0 chr6 91763839 91764148 -90651094 - AluY SINE Alu -2 309 1 330 45 0 0 chr6 91764328 91764372 -90650870 + (CA)n Simple_repeat Simple_repeat 1 44 0 201 323 150 57 chr6 91764373 91764537 -90650705 - MIR SINE MIR -61 147 2 228 217 22 0 chr6 91764773 91764819 -90650423 + GA-rich Low_complexity Low_complexity 4 50 0 1991 133 0 3 chr6 91765754 91766039 -90649203 - AluSq SINE Alu -27 286 3 230 290 149 47 chr6 91766050 91766157 -90649085 + L3 LINE CR1 185 302 -1275 1724 160 48 83 chr6 91766724 91767099 -90648143 + MLT1A1 LTR MaLR 4 365 0 227 291 12 12 chr6 91767812 91767898 -90647344 + CT-rich Low_complexity Low_complexity 4 89 0 508 278 38 38 chr6 91767913 91768122 -90647120 - MLT1J LTR MaLR -2 509 301 442 313 101 26 chr6 91768378 91768605 -90646637 - MIR SINE MIR 0 262 19 2299 193 97 15 chr6 91768955 91769490 -90645752 + MER63C DNA MER1_type 256 834 -96 533 123 19 161 chr6 91769515 91769670 -90645572 - L1MA5 LINE L1 -2 6298 6166 230 275 22 11 chr6 91769674 91769765 -90645477 - L1MEc LINE L1 -3875 2521 2430 289 365 74 46 chr6 91769827 91770583 -90644659 - L2 LINE L2 -1359 1955 1179 311 164 0 0 chr6 91770589 91770644 -90644598 + MER63C DNA MER1_type 826 880 -50 843 248 81 31 chr6 91770981 91771417 -90643825 + MLT1H LTR MaLR 3 534 -15 3674 147 55 4 chr6 91771612 91772186 -90643056 + L1PA16 LINE L1 4717 5260 -906 234 0 0 0 chr6 91772186 91772212 -90643030 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3674 147 55 4 chr6 91772212 91772367 -90642875 + L1PA16 LINE L1 5260 5406 -760 3674 124 65 3 chr6 91772367 91772976 -90642266 + L1PA16 LINE L1 5504 6156 -10 3674 147 55 4 chr6 91772976 91772988 -90642254 + L1PA16 LINE L1 5406 6156 -10 25 65 0 0 chr6 91773470 91773516 -90641726 + AT_rich Low_complexity Low_complexity 1 46 0 359 89 18 0 chr6 91773636 91773692 -90641550 + (CA)n Simple_repeat Simple_repeat 1 57 0 2475 47 0 3 chr6 91774017 91774344 -90640898 - AluY SINE Alu 0 326 1 183 80 0 0 chr6 91774446 91774471 -90640771 + (TG)n Simple_repeat Simple_repeat 1 25 0 25 51 0 0 chr6 91774593 91774632 -90640610 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 91774678 91774699 -90640543 + AT_rich Low_complexity Low_complexity 1 21 0 333 238 74 41 chr6 91775578 91775700 -90639542 - L1ME4a LINE L1 -2 6119 5994 42667 33 22 1 chr6 91776698 91782725 -90632517 - L1PA2 LINE L1 -1 6154 1 1399 165 106 33 chr6 91784546 91784819 -90630423 - AluJo SINE Alu -19 293 1 2131 136 40 8 chr6 91784847 91785200 -90630042 - THE1B LTR MaLR 0 364 1 416 298 78 0 chr6 91785383 91785524 -90629718 + MIR3 SINE MIR 16 167 -41 28 61 0 0 chr6 91785955 91786004 -90629238 + AT_rich Low_complexity Low_complexity 1 49 0 1832 162 3 7 chr6 91787463 91787759 -90627483 + AluJo SINE Alu 1 295 -17 383 277 157 6 chr6 91788605 91788764 -90626478 + MIR SINE MIR 21 203 -59 314 133 60 12 chr6 91788894 91788977 -90626265 - MER69 DNA AcHobo -77 2449 2363 800 273 55 6 chr6 91788993 91789319 -90625923 - MER69 DNA AcHobo -268 2258 1917 * 821 246 124 13 chr6 91789315 91789664 -90625578 - MER69 DNA AcHobo -2094 432 2 211 172 17 17 chr6 91790338 91790396 -90624846 + CT-rich Low_complexity Low_complexity 3 60 0 2791 10 0 0 chr6 91790587 91790893 -90624349 - AluYa5 SINE Alu -5 306 1 1003 255 16 8 chr6 91791586 91791829 -90623413 - MIR SINE MIR 0 262 18 1227 193 28 28 chr6 91792447 91792737 -90622505 - AluY SINE Alu -11 290 1 2085 132 3 6 chr6 91792750 91793061 -90622181 - AluSg SINE Alu 0 310 1 227 229 60 60 chr6 91793719 91793802 -90621440 + MLT1K LTR MaLR 188 270 -318 724 178 81 6 chr6 91795193 91795367 -90619875 - MER53 DNA DNA 0 189 3 2173 110 3 3 chr6 91795451 91795750 -90619492 + AluSg SINE Alu 1 299 -11 511 277 1 9 chr6 91796226 91796386 -90618856 + L1M4 LINE L1 4029 4185 -1961 2189 110 7 0 chr6 91796614 91796913 -90618329 + AluSx SINE Alu 1 301 -11 5800 164 14 21 chr6 91797706 91798211 -90617031 + L1PB1 LINE L1 4633 5140 -1011 587 12 0 59 chr6 91798211 91798296 -90616946 + L1PA4 LINE L1 6076 6155 0 5800 164 14 21 chr6 91798296 91798928 -90616314 + L1PB1 LINE L1 5140 5756 -395 1966 98 0 0 chr6 91798928 91799183 -90616059 + AluSg SINE Alu 55 309 -1 5800 164 14 21 chr6 91799183 91799572 -90615670 + L1PB1 LINE L1 5756 6146 -5 278 332 88 11 chr6 91799601 91799863 -90615379 + L1MEd LINE L1 908 1189 -4930 270 264 139 49 chr6 91800043 91800187 -90615055 + HAL1 LINE L1 290 446 -2061 438 302 29 43 chr6 91800531 91800670 -90614572 + MIR SINE MIR 5 141 -121 2103 135 0 0 chr6 91800672 91800968 -90614274 - AluSx SINE Alu -16 296 1 3718 197 39 21 chr6 91801191 91802085 -90613157 + L1MC4 LINE L1 7119 8028 -14 1411 284 34 44 chr6 91802412 91802890 -90612352 + MLT1J LTR MaLR 1 473 -38 516 255 237 58 chr6 91803344 91803622 -90611620 - MLT1I LTR MaLR -10 399 72 714 243 46 0 chr6 91803670 91803822 -90611420 - MLT1I LTR MaLR -201 208 50 966 201 146 9 chr6 91804212 91804541 -90610701 + Charlie1 DNA MER1_type 2343 2716 -45 307 190 17 0 chr6 91804569 91804627 -90610615 + Charlie1 DNA MER1_type 2702 2760 -1 1266 269 81 52 chr6 91804940 91805497 -90609745 - MLT1L LTR MaLR -36 579 7 694 304 49 20 chr6 91806114 91806420 -90608822 + L2 LINE L2 2995 3309 -4 557 242 7 0 chr6 91807926 91808075 -90607167 - L1MB7 LINE L1 -18 6166 6017 236 53 26 0 chr6 91808717 91808755 -90606487 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 456 284 16 24 chr6 91808849 91808976 -90606266 + L2 LINE L2 3187 3312 -1 234 0 0 0 chr6 91810029 91810055 -90605187 + (A)n Simple_repeat Simple_repeat 1 26 0 665 181 6 18 chr6 91810280 91810446 -90604796 + CT-rich Low_complexity Low_complexity 1 164 0 216 156 0 0 chr6 91810448 91810480 -90604762 + polypyrimidine Low_complexity Low_complexity 1 32 0 1301 193 0 17 chr6 91810497 91810730 -90604512 - AluJb SINE Alu -83 229 1 348 330 55 58 chr6 91810740 91810779 -90604463 + L2 LINE L2 2047 2085 -1229 246 32 0 0 chr6 91810779 91810810 -90604432 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 348 330 55 58 chr6 91810810 91811061 -90604181 + L2 LINE L2 2085 2336 -978 1099 293 99 6 chr6 91811179 91811524 -90603718 + MLT1I LTR MaLR 30 406 -3 484 363 136 14 chr6 91811599 91812032 -90603210 + L2 LINE L2 2360 2845 -469 181 299 0 126 chr6 91812059 91812186 -90603056 + L2 LINE L2 2970 3080 -192 207 0 0 0 chr6 91812234 91812257 -90602985 + (T)n Simple_repeat Simple_repeat 1 23 0 4364 92 3 19 chr6 91812393 91813023 -90602219 - L1PA10 LINE L1 -3 6165 5546 313 253 33 22 chr6 91813098 91813189 -90602053 - MIR SINE MIR -10 252 161 21 0 0 0 chr6 91813288 91813309 -90601933 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr6 91813392 91813438 -90601804 + AT_rich Low_complexity Low_complexity 1 46 0 703 368 70 22 chr6 91816384 91816974 -90598268 - L2 LINE L2 -686 2628 2011 38 61 0 0 chr6 91818504 91818570 -90596672 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr6 91818960 91818988 -90596254 + AT_rich Low_complexity Low_complexity 1 28 0 325 303 208 6 chr6 91819903 91820081 -90595161 - MIR SINE MIR -12 250 37 446 264 40 8 chr6 91821856 91821981 -90593261 - MIR SINE MIR -13 249 121 3402 137 50 5 chr6 91822478 91823053 -90592189 + MER6A DNA MER2_type 5 605 0 415 237 148 0 chr6 91823117 91823252 -90591990 + MIR SINE MIR 104 258 -4 186 209 47 0 chr6 91823284 91823327 -90591915 + MIR SINE MIR 218 262 0 194 206 0 0 chr6 91823343 91823377 -90591865 - L2 LINE L2 -12 3301 3268 248 374 66 26 chr6 91823611 91823838 -90591404 - L2 LINE L2 -427 2887 2652 261 225 56 14 chr6 91824250 91824321 -90590921 - MER58 DNA MER1_type 0 2420 2347 250 197 303 0 chr6 91824338 91824404 -90590838 - MER58 DNA MER1_type -2333 87 2 1283 210 67 24 chr6 91825043 91825372 -90589870 - MER2 DNA MER2_type -2 343 1 248 265 176 12 chr6 91826450 91826620 -90588622 + L2 LINE L2 3113 3310 -3 2794 142 20 2 chr6 91826707 91827166 -90588076 - MLT1C LTR MaLR 0 467 1 1297 150 44 9 chr6 91827705 91827932 -90587310 - MER46A DNA MER2_type 0 236 2 1779 150 3 33 chr6 91828015 91828322 -90586920 - AluJo SINE Alu -14 298 1 2006 115 141 0 chr6 91829087 91829400 -90585842 + LTR18A LTR ERVL 1 357 0 2913 194 28 42 chr6 91830721 91830952 -90584290 - MER82 DNA MER2_type -1 652 419 1939 128 24 3 chr6 91830952 91831240 -90584002 + AluSp SINE Alu 3 296 -17 2913 194 28 42 chr6 91831240 91831625 -90583617 - MER82 DNA MER2_type -234 419 45 511 254 9 9 chr6 91831624 91831738 -90583504 - MER82 DNA MER2_type -538 115 2 * 23 0 0 0 chr6 91832025 91832048 -90583194 + AT_rich Low_complexity Low_complexity 1 23 0 563 259 15 8 chr6 91832165 91832296 -90582946 - MER82 DNA MER2_type -59 594 463 2211 98 3 10 chr6 91832375 91832682 -90582560 - AluSq SINE Alu -8 305 1 264 268 146 0 chr6 91832933 91833015 -90582227 + Charlie8 DNA MER1_type 11 104 -2313 889 226 56 32 chr6 91833015 91833423 -90581819 - L1M4 LINE L1 -2623 3523 3106 297 174 145 14 chr6 91833741 91833810 -90581432 - MIR SINE MIR -75 187 110 281 309 73 18 chr6 91834352 91834462 -90580780 - MIR SINE MIR -145 117 2 407 184 26 0 chr6 91834755 91834831 -90580411 + Tigger7 DNA MER2_type 93 170 -380 240 114 0 23 chr6 91834837 91834881 -90580361 + Tigger7 DNA MER2_type 2311 2353 -234 1157 119 0 30 chr6 91834881 91835049 -90580193 + AluSq SINE Alu 1 163 -150 279 79 0 0 chr6 91835510 91835548 -90579694 + (TC)n Simple_repeat Simple_repeat 2 39 0 1920 188 101 27 chr6 91835600 91836083 -90579159 + LTR40a LTR ERVL 1 519 0 189 327 0 0 chr6 91836639 91836691 -90578551 + MIR SINE MIR 63 114 -148 2603 133 11 51 chr6 91837208 91837659 -90577583 - Tigger2a DNA MER2_type -1 433 1 213 146 24 0 chr6 91837827 91837868 -90577374 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 1929 148 0 0 chr6 91837869 91838152 -90577090 - AluSx SINE Alu -29 283 1 2861 118 29 27 chr6 91839116 91839598 -90575644 - L1MA4A LINE L1 -306 5997 5515 7120 38 23 0 chr6 91839598 91840720 -90574522 - L1PA5 LINE L1 -2 6152 5008 11722 32 1 10 chr6 91840750 91842197 -90573045 - L1PA5 LINE L1 -1106 5040 3608 522 108 0 0 chr6 91843019 91843102 -90572140 + (TCCCC)n Simple_repeat Simple_repeat 2 84 0 1644 158 31 38 chr6 91843107 91843399 -90571843 - AluJo SINE Alu -22 290 1 2385 94 3 0 chr6 91843719 91844026 -90571216 - AluSg SINE Alu -2 308 1 236 319 14 0 chr6 91844065 91844134 -90571108 + L2 LINE L2 3193 3262 -10 27 0 0 0 chr6 91844164 91844191 -90571051 + AT_rich Low_complexity Low_complexity 1 27 0 663 165 0 0 chr6 91844192 91844295 -90570947 - FLAM_A SINE Alu -19 123 21 3384 125 65 2 chr6 91844400 91844920 -90570322 - MER41C LTR ERV1 -1 553 1 374 202 10 50 chr6 91845227 91845342 -90569900 - L1MC4 LINE L1 -1 8041 7885 2020 235 118 33 chr6 91845355 91845748 -90569494 - L1MEc LINE L1 -4259 2863 2505 2085 108 11 3 chr6 91845748 91846035 -90569207 - AluSc SINE Alu -20 289 1 2020 235 118 33 chr6 91846035 91846254 -90568988 - L1MEc LINE L1 -4617 2505 2306 2126 149 72 36 chr6 91846254 91846671 -90568571 - MSTB1 LTR MaLR 0 432 1 2020 235 118 33 chr6 91846671 91847259 -90567983 - L1MEc LINE L1 -4816 2306 1769 2379 68 3 0 chr6 91847259 91847551 -90567691 - AluY SINE Alu -18 293 1 2020 235 118 33 chr6 91847551 91848074 -90567168 - L1MEc LINE L1 -5353 1769 790 1310 212 91 32 chr6 91848585 91848990 -90566252 - L1MEc LINE L1 -5957 466 38 741 158 35 12 chr6 91849010 91849181 -90566061 - L1MA4 LINE L1 0 6300 6126 703 290 70 55 chr6 91849918 91850068 -90565174 - HAL1 LINE L1 -1995 512 366 1867 175 0 6 chr6 91850068 91850382 -90564860 - AluJo SINE Alu 0 312 1 703 290 70 55 chr6 91850382 91850703 -90564539 - HAL1 LINE L1 -2141 366 34 1837 272 141 38 chr6 91850923 91851611 -90563631 + L1ME LINE L1 33 649 -5612 1891 130 45 0 chr6 91851611 91851903 -90563339 + AluY SINE Alu 1 305 -6 1837 272 141 38 chr6 91851903 91852962 -90562280 + L1ME LINE L1 649 2056 -4205 23 108 0 0 chr6 91853034 91853127 -90562115 + AT_rich Low_complexity Low_complexity 1 93 0 714 294 95 12 chr6 91853172 91853509 -90561733 + L1ME LINE L1 2143 2507 -3573 193 259 0 69 chr6 91853708 91853766 -90561476 + L2 LINE L2 3256 3309 -4 1500 181 172 20 chr6 91853861 91854315 -90560927 - Charlie1b DNA MER1_type 0 523 1 1935 167 50 25 chr6 91854684 91854882 -90560360 + L1MB8 LINE L1 5515 5707 -463 2388 135 92 2 chr6 91854882 91855275 -90559967 - MSTC LTR MaLR 0 428 1 1935 167 50 25 chr6 91855275 91855623 -90559619 + L1MB8 LINE L1 5707 6103 -67 27 0 0 0 chr6 91855687 91855714 -90559528 + AT_rich Low_complexity Low_complexity 1 27 0 389 306 41 53 chr6 91856072 91856242 -90559000 + L3 LINE CR1 1407 1574 -3 387 141 0 0 chr6 91856684 91856748 -90558494 + (TGGA)n Simple_repeat Simple_repeat 2 65 0 24 0 0 0 chr6 91856979 91857003 -90558239 + AT_rich Low_complexity Low_complexity 1 24 0 13553 131 35 14 chr6 91857198 91858549 -90556693 + Tigger1 DNA MER2_type 1 1322 -1096 2100 143 84 32 chr6 91858549 91858954 -90556288 - MSTA LTR MaLR -2 426 1 13553 131 35 14 chr6 91858954 91859858 -90555384 + Tigger1 DNA MER2_type 1322 2311 -107 1742 160 7 17 chr6 91859858 91860152 -90555090 - AluJo SINE Alu -21 291 1 13553 131 35 14 chr6 91860152 91860263 -90554979 + Tigger1 DNA MER2_type 2311 2418 0 1780 158 20 14 chr6 91862016 91862308 -90552934 + AluJb SINE Alu 1 294 -18 1008 252 96 47 chr6 91862366 91862771 -90552471 - LTR16C LTR ERVL 0 491 67 1965 154 0 0 chr6 91863086 91863372 -90551870 + AluSx SINE Alu 1 286 -26 229 255 0 0 chr6 91864713 91864760 -90550482 + (TG)n Simple_repeat Simple_repeat 2 48 0 720 213 46 6 chr6 91865712 91865886 -90549356 + MER3 DNA MER1_type 7 187 -22 231 303 156 28 chr6 91866526 91866635 -90548607 + L2 LINE L2 3150 3272 0 1674 167 0 7 chr6 91866742 91867012 -90548230 + AluJb SINE Alu 1 268 -44 429 132 0 15 chr6 91867012 91867101 -90548141 + AluSg/x SINE Alu 216 303 0 401 290 19 68 chr6 91868748 91868910 -90546332 + MIR SINE MIR 44 197 -65 1746 213 0 0 chr6 91868918 91869228 -90546014 + AluJb SINE Alu 1 310 -2 1536 119 7 47 chr6 91869244 91869480 -90545762 - Tigger7 DNA MER2_type -8 2479 2254 2314 99 0 16 chr6 91869480 91869784 -90545458 - AluSq SINE Alu -14 299 1 1536 119 7 47 chr6 91869784 91869825 -90545417 - Tigger7 DNA MER2_type -233 2254 2213 859 211 6 12 chr6 91869833 91869999 -90545243 - Tigger7 DNA MER2_type -534 171 7 879 182 39 6 chr6 91870298 91870479 -90544763 - MER1B DNA MER1_type -77 262 76 3888 161 53 9 chr6 91871119 91871895 -90543347 - L1MB5 LINE L1 -8 6166 5357 663 263 98 20 chr6 91874219 91874619 -90540623 - L1ME4a LINE L1 -112 6009 5579 1737 150 0 62 chr6 91874776 91875083 -90540159 + AluJo SINE Alu 1 288 -24 317 291 39 28 chr6 91875389 91875571 -90539671 - L1MC4a LINE L1 -1921 5887 5704 192 77 0 0 chr6 91876280 91876306 -90538936 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 182 284 58 162 chr6 91876310 91876588 -90538654 - L2 LINE L2 -14 3258 3010 646 255 83 29 chr6 91877528 91877732 -90537510 + MIR SINE MIR 42 256 -6 299 349 23 0 chr6 91877941 91878027 -90537215 - MER5A DNA MER1_type -93 96 9 413 317 48 14 chr6 91878127 91878272 -90536970 + MIR SINE MIR 5 154 -108 448 182 0 11 chr6 91879891 91879979 -90535263 + MER63 DNA MER1_type 40 752 -310 345 174 0 0 chr6 91880031 91880100 -90535142 + GA-rich Low_complexity Low_complexity 1 69 0 2006 148 19 38 chr6 91881213 91881584 -90533658 + THE1B LTR MaLR 1 364 0 9785 96 87 1 chr6 91881584 91883040 -90532202 + THE1B-int LTR MaLR 1 1580 0 2259 125 22 30 chr6 91883040 91883407 -90531835 + THE1B LTR MaLR 1 364 0 2086 181 73 5 chr6 91884008 91884445 -90530797 - MLT1D LTR MaLR -9 496 30 404 173 19 10 chr6 91885361 91885466 -90529776 + MLT1I LTR MaLR 315 408 -1 285 311 39 108 chr6 91885882 91886319 -90528923 - LTR16C LTR ERVL 0 491 85 250 305 8 25 chr6 91887381 91887499 -90527743 + HAL1 LINE L1 19 134 -2373 11078 48 6 0 chr6 91887630 91889096 -90526146 - L1P LINE L1 -3223 2923 1450 12310 179 31 14 chr6 91889096 91891095 -90524147 - L1M1 LINE L1 -743 6105 4170 195 100 0 0 chr6 91891095 91891125 -90524117 + (TTG)n Simple_repeat Simple_repeat 1 30 0 12310 179 31 14 chr6 91891125 91892128 -90523114 - L1M1 LINE L1 -2678 4170 3186 7415 201 112 5 chr6 91892123 91892452 -90522790 - L1M1 LINE L1 -4885 1964 1672 * 1867 125 49 7 chr6 91892452 91892778 -90522464 - AluSx SINE Alu 0 312 1 7415 201 112 5 chr6 91892778 91894211 -90521031 - L1M1 LINE L1 -5177 1672 13 528 261 16 88 chr6 91894307 91894523 -90520719 - L1ME LINE L1 -303 5818 5629 930 169 14 0 chr6 91894523 91894671 -90520571 - FRAM SINE Alu -12 154 5 528 261 16 88 chr6 91894671 91894760 -90520482 - L1ME LINE L1 -492 5629 5535 563 220 17 0 chr6 91894767 91894885 -90520357 - Charlie1a DNA MER1_type -842 613 494 5276 103 12 1 chr6 91894914 91895713 -90519529 - L1PA14 LINE L1 0 6161 5354 456 81 40 0 chr6 91895714 91895788 -90519454 - L1PA10 LINE L1 -1 6167 6091 1641 211 49 28 chr6 91895788 91896256 -90518986 - Charlie1a DNA MER1_type -971 484 7 303 273 128 35 chr6 91896757 91896929 -90518313 - L1MC4a LINE L1 -1605 6203 6016 1144 183 24 9 chr6 91897187 91897400 -90517842 + MER20 DNA MER1_type 1 216 -3 243 211 39 0 chr6 91897676 91897728 -90517514 + MIR SINE MIR 97 150 -112 941 158 0 0 chr6 91898558 91898691 -90516551 + FLAM_C SINE Alu 1 133 -10 22 0 0 0 chr6 91898691 91898713 -90516529 + AT_rich Low_complexity Low_complexity 1 22 0 1933 140 0 41 chr6 91899199 91899513 -90515729 + AluJb SINE Alu 3 303 -9 2265 110 3 0 chr6 91901969 91902270 -90512972 - AluSg SINE Alu -8 302 1 24 0 0 0 chr6 91902273 91902297 -90512945 + AT_rich Low_complexity Low_complexity 1 24 0 202 307 27 13 chr6 91902383 91902458 -90512784 - L3 LINE CR1 -77 1500 1425 350 328 186 0 chr6 91902961 91903138 -90512104 - L3 LINE CR1 -364 1213 1004 341 321 65 69 chr6 91903216 91903462 -90511780 - L3 LINE CR1 -867 710 466 1331 205 69 114 chr6 91904627 91905378 -90509864 + L1ME3A LINE L1 5451 6167 -3 356 171 81 41 chr6 91905750 91905873 -90509369 - L1ME4a LINE L1 -3 6118 5991 304 222 119 24 chr6 91905939 91906065 -90509177 - L1ME4a LINE L1 -259 5862 5725 870 237 70 9 chr6 91906939 91907154 -90508088 - MIR SINE MIR -30 232 5 369 0 0 0 chr6 91907196 91907237 -90508005 + (TG)n Simple_repeat Simple_repeat 2 42 0 247 436 50 0 chr6 91907438 91907578 -90507664 - L2 LINE L2 -5 3267 3121 21 0 0 0 chr6 91907982 91908003 -90507239 + AT_rich Low_complexity Low_complexity 1 21 0 214 186 47 0 chr6 91908069 91908112 -90507130 - MIR SINE MIR -136 126 82 272 210 256 62 chr6 91908199 91908375 -90506867 - L2 LINE L2 -6 3307 3098 258 269 32 32 chr6 91909043 91909136 -90506106 - LTR42 LTR ERVL -402 93 1 549 255 20 26 chr6 91909281 91909434 -90505808 + L2 LINE L2 3162 3313 0 486 152 0 30 chr6 91910048 91910147 -90505095 - L1PA8 LINE L1 -1 6171 6076 1085 196 29 5 chr6 91910230 91910439 -90504803 - AluJb SINE Alu -18 294 81 2116 60 0 19 chr6 91911261 91911528 -90503714 + AluY SINE Alu 43 304 -7 2711 131 21 5 chr6 91912449 91912869 -90502373 - MSTA LTR MaLR 0 428 2 1741 235 200 22 chr6 91912999 91913783 -90501459 - HAL1 LINE L1 -1041 1466 543 1341 153 75 30 chr6 91913816 91914129 -90501113 - MLT1B LTR MaLR 0 390 1 1244 243 51 73 chr6 91914133 91914626 -90500616 - HAL1 LINE L1 -2016 491 10 3214 236 36 3 chr6 91914735 91915423 -90499819 - MER21B LTR ERV1 -105 758 48 369 244 0 13 chr6 91915425 91915503 -90499739 - MER21B LTR ERV1 -768 95 19 298 220 17 0 chr6 91915531 91915590 -90499652 - MER21B LTR ERV1 -792 71 12 5416 121 40 7 chr6 91917343 91918179 -90497063 - Tigger1 DNA MER2_type 0 2418 1556 513 160 85 47 chr6 91918185 91918291 -90496951 + Tigger1 DNA MER2_type 1258 1367 -1051 1887 115 19 22 chr6 91918292 91918605 -90496637 - Tigger1 DNA MER2_type -1552 866 555 2425 38 0 0 chr6 91919239 91919528 -90495714 - L1PA5 LINE L1 -3 6151 5863 940 281 71 23 chr6 91919946 91920513 -90494729 + MER115 DNA AcHobo 8 676 -17 812 135 0 30 chr6 91921558 91921691 -90493551 + FLAM_C SINE Alu 12 140 -3 413 323 96 43 chr6 91923837 91924212 -90491030 + L2 LINE L2 2261 2655 -659 2433 93 0 0 chr6 91924428 91924739 -90490503 + AluSx SINE Alu 1 311 -1 356 340 85 0 chr6 91924843 91924949 -90490293 + L2 LINE L2 3141 3255 -17 2110 122 30 0 chr6 91924951 91925254 -90489988 - AluSx SINE Alu 0 312 1 2369 73 0 13 chr6 91926271 91926571 -90488671 - AluSp SINE Alu -17 296 1 180 97 0 0 chr6 91927432 91927463 -90487779 + (T)n Simple_repeat Simple_repeat 1 31 0 348 206 107 38 chr6 91928370 91928501 -90486741 + MER103 DNA DNA 8 147 -19 263 330 87 29 chr6 91929306 91929479 -90485763 + MIR SINE MIR 35 217 -45 30204 115 26 56 chr6 91929617 91935950 -90479292 + L1PA7 LINE L1 12 6144 -10 414 263 42 34 chr6 91937227 91937345 -90477897 + MIR SINE MIR 86 204 -58 334 158 263 0 chr6 91938136 91938250 -90476992 - L1ME4a LINE L1 -6 6115 5972 738 188 65 7 chr6 91938408 91938562 -90476680 + MER20 DNA MER1_type 57 219 0 352 263 0 0 chr6 91938570 91938650 -90476592 - L1ME4a LINE L1 -297 5824 5745 5160 68 3 0 chr6 91938736 91939393 -90475849 - L1PA7 LINE L1 -15 6139 5481 483 225 109 0 chr6 91940557 91940695 -90474547 - MER103 DNA DNA -3 163 11 24 32 0 0 chr6 91940794 91940825 -90474417 + AT_rich Low_complexity Low_complexity 1 31 0 1308 191 4 8 chr6 91941833 91942095 -90473147 - L1PA16 LINE L1 -17 6149 5889 27 51 0 17 chr6 91942149 91942181 -90473061 + AT_rich Low_complexity Low_complexity 1 33 -25 1279 144 91 117 chr6 91942181 91942479 -90472763 - AluJo SINE Alu -20 292 3 27 51 0 17 chr6 91942479 91942505 -90472737 + AT_rich Low_complexity Low_complexity 33 58 0 5278 85 18 40 chr6 91943575 91944372 -90470870 - MER4E LTR ERV1 0 779 1 22 0 0 0 chr6 91944392 91944414 -90470828 + AT_rich Low_complexity Low_complexity 1 22 0 34 42 0 0 chr6 91944468 91944516 -90470726 + AT_rich Low_complexity Low_complexity 1 48 0 2185 77 0 4 chr6 91944809 91945082 -90470160 + AluSq SINE Alu 36 307 -6 221 309 64 53 chr6 91945670 91945764 -90469478 - L2 LINE L2 -68 3204 3110 389 239 18 110 chr6 91946128 91946291 -90468951 + MIR SINE MIR 14 161 -101 1768 228 48 60 chr6 91946434 91947136 -90468106 + L1MC5 LINE L1 6996 7689 -272 1810 151 78 28 chr6 91948774 91949131 -90466111 + THE1C LTR MaLR 1 375 0 316 94 0 59 chr6 91949310 91949395 -90465847 + (TTTTA)n Simple_repeat Simple_repeat 1 80 0 247 286 98 18 chr6 91949602 91949714 -90465528 + L2 LINE L2 2555 2675 -639 1638 204 49 54 chr6 91949941 91950347 -90464895 - MLT1E2 LTR MaLR -2 624 221 1095 209 37 8 chr6 91950375 91950619 -90464623 - MLT1E2 LTR MaLR -375 251 1 2447 96 8 11 chr6 91951201 91951557 -90463685 + THE1A LTR MaLR 1 355 0 11959 85 3 6 chr6 91951557 91953140 -90462102 + THE1A-int LTR MaLR 1 1578 -2 2080 129 12 21 chr6 91953142 91953482 -90461760 + THE1A LTR MaLR 1 337 -18 819 247 39 8 chr6 91953482 91953737 -90461505 + L1MB8 LINE L1 5914 6176 -2 27 29 0 0 chr6 91953807 91953841 -90461401 + AT_rich Low_complexity Low_complexity 1 34 0 2326 88 3 0 chr6 91953851 91954148 -90461094 + AluSp SINE Alu 7 304 -9 564 324 84 29 chr6 91954155 91954642 -90460600 + HAL1b LINE L1 100 613 -735 2031 124 24 0 chr6 91955060 91955350 -90459892 - AluSq SINE Alu -16 297 1 637 180 99 14 chr6 91955971 91956189 -90459053 - L1ME LINE L1 -720 5442 5208 3204 86 29 2 chr6 91956582 91957035 -90458207 - MER4C LTR ERV1 0 465 1 5863 141 45 54 chr6 91957043 91958347 -90456895 - MER4C-int LTR ERV1 -2 6596 5304 1755 118 8 0 chr6 91958718 91958956 -90456286 - AluSq SINE Alu -16 297 58 8126 138 61 36 chr6 91958987 91959093 -90456149 - MER4C-int LTR ERV1 -1354 5244 5142 2322 94 0 3 chr6 91959093 91959392 -90455850 - AluSq SINE Alu -15 298 1 8126 138 61 36 chr6 91959392 91961057 -90454185 - MER4C-int LTR ERV1 -1456 5142 3428 2523 144 46 53 chr6 91961083 91961756 -90453486 - MER4C-int LTR ERV1 -4475 2283 1616 1481 228 103 86 chr6 91961760 91962518 -90452724 - LTR19C LTR ERV1 -2 777 7 1349 116 30 158 chr6 91962524 91963077 -90452165 - MER4C-int LTR ERV1 -5335 1423 852 2196 164 44 41 chr6 91963078 91963678 -90451564 - MER4C-int LTR ERV1 -3540 1583 1190 374 191 0 0 chr6 91963810 91963878 -90451364 - MER4C-int LTR ERV1 -3219 2727 2660 1414 215 53 21 chr6 91963881 91964257 -90450985 - MER4C-int LTR ERV1 -4060 2271 1884 1653 194 106 31 chr6 91964258 91964768 -90450474 + LTR10A LTR ERV1 1 548 -61 408 119 0 79 chr6 91964853 91964954 -90450288 - MER4C-int LTR ERV1 -5755 843 751 2145 146 174 12 chr6 91964988 91965495 -90449747 - MER4C-int LTR ERV1 -6009 589 1 2913 111 57 2 chr6 91965498 91965939 -90449303 - MER4C LTR ERV1 0 465 1 288 0 0 0 chr6 91966163 91966195 -90449047 + (GA)n Simple_repeat Simple_repeat 1 32 0 6408 145 18 5 chr6 91966960 91968854 -90446388 - L1MA3 LINE L1 0 6305 4385 13038 97 17 6 chr6 91968857 91969478 -90445764 + MER57-int LTR ERV1 4332 4945 -2592 2115 112 5 59 chr6 91969478 91969853 -90445389 - THE1A LTR MaLR 0 355 1 13038 97 17 6 chr6 91969853 91971976 -90443266 + MER57-int LTR ERV1 4945 7149 -388 680 94 24 31 chr6 91971976 91972103 -90443139 + LTR54B LTR ERV1 6 131 -367 288 0 0 0 chr6 91972153 91972185 -90443057 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 256 100 0 80 chr6 91972186 91972236 -90443006 - MER57-int LTR ERV1 -219 7318 7273 461 86 14 0 chr6 91972305 91972375 -90442867 + MER57-int LTR ERV1 6282 6352 -1185 412 276 94 78 chr6 91972448 91972872 -90442370 - L1MA3 LINE L1 -2591 3555 3125 1515 152 158 15 chr6 91973819 91974147 -90441095 - THE1C LTR MaLR 0 375 1 283 365 17 31 chr6 91974954 91975169 -90440073 - MIR SINE MIR -40 222 14 540 68 0 0 chr6 91976505 91976578 -90438664 + (CA)n Simple_repeat Simple_repeat 1 73 0 503 292 8 0 chr6 91976600 91976720 -90438522 + MIR3 SINE MIR 82 202 -6 290 284 120 0 chr6 91977077 91977260 -90437982 - L1ME4a LINE L1 -18 6103 5899 2068 217 63 48 chr6 91977261 91977971 -90437271 + Charlie1 DNA MER1_type 454 1174 -1587 3630 178 91 34 chr6 91977972 91978334 -90436908 + Charlie1 DNA MER1_type 1686 2026 -735 2129 99 37 0 chr6 91978334 91978628 -90436614 - AluSq SINE Alu -8 305 1 3630 178 91 34 chr6 91978628 91979281 -90435961 + Charlie1 DNA MER1_type 2026 2759 -2 308 304 0 13 chr6 91979788 91979867 -90435375 + L2 LINE L2 3192 3269 -3 214 176 20 39 chr6 91979871 91979922 -90435320 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 372 43 0 0 chr6 91980099 91980145 -90435097 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 216 86 0 29 chr6 91980146 91980170 -90435072 + (TTTCC)n Simple_repeat Simple_repeat 4 28 -9 1977 123 0 4 chr6 91980170 91980446 -90434796 - AluSq SINE Alu -38 275 1 216 86 0 29 chr6 91980446 91980456 -90434786 + (TTTCC)n Simple_repeat Simple_repeat 28 37 0 660 283 110 0 chr6 91980574 91980802 -90434440 + MIR SINE MIR 11 257 -5 464 185 59 8 chr6 91981938 91982057 -90433185 - L1ME3A LINE L1 -199 5971 5847 3436 191 39 35 chr6 91982392 91982617 -90432625 + L1ME1 LINE L1 5190 5413 -753 7164 95 16 20 chr6 91982617 91983690 -90431552 + MER11C LTR ERVK 1 1069 -2 3436 191 39 35 chr6 91983690 91984421 -90430821 + L1ME1 LINE L1 5413 6161 -5 23 33 0 0 chr6 91985225 91985255 -90429987 + AT_rich Low_complexity Low_complexity 1 30 0 678 295 95 8 chr6 91985434 91985675 -90429567 + MIR SINE MIR 1 262 0 419 265 23 23 chr6 91985728 91985860 -90429382 + MER5A DNA MER1_type 23 154 -35 439 273 27 40 chr6 91985920 91986070 -90429172 - MER5A DNA MER1_type -3 186 39 213 39 0 0 chr6 91987626 91987652 -90427590 + (TTG)n Simple_repeat Simple_repeat 2 27 0 491 269 107 32 chr6 91987963 91988216 -90427026 - MLT1L LTR MaLR -2 613 342 288 208 129 30 chr6 91988340 91988441 -90426801 - MIR SINE MIR 0 262 152 833 129 0 0 chr6 91988448 91988564 -90426678 - AluSc SINE Alu -15 294 179 599 258 90 7 chr6 91988682 91989032 -90426210 + LTR16A LTR ERVL 7 436 -14 22 0 0 0 chr6 91992360 91992382 -90422860 + AT_rich Low_complexity Low_complexity 1 22 0 1233 219 33 39 chr6 91992405 91992766 -90422476 - L1MA10 LINE L1 -10 6324 5966 699 164 0 0 chr6 91992771 91992887 -90422355 + MLT1A1 LTR MaLR 250 365 0 236 103 26 0 chr6 91992893 91992932 -90422310 + L1M1 LINE L1 5734 5773 -531 1260 157 4 0 chr6 91992933 91993169 -90422073 - L1MA10 LINE L1 -350 5962 5726 227 108 27 0 chr6 91993169 91993206 -90422036 - MLT1A1 LTR MaLR -2 394 357 481 176 0 148 chr6 91993290 91993432 -90421810 - MLT1A1 LTR MaLR -171 194 74 1203 104 0 0 chr6 91993432 91993586 -90421656 - AluY SINE Alu -12 299 146 374 143 0 17 chr6 91993638 91993719 -90421523 - L1MA10 LINE L1 -445 5726 5655 206 391 46 20 chr6 91993752 91993903 -90421339 - L2 LINE L2 -17 3255 3101 449 338 89 14 chr6 91994134 91994347 -90420895 - MIR SINE MIR -3 259 31 248 299 62 57 chr6 91995284 91995495 -90419747 - L2 LINE L2 -179 3093 2882 319 306 192 20 chr6 91995727 91996024 -90419218 - L3b LINE CR1 -133 1450 1103 22 0 0 0 chr6 91996102 91996124 -90419118 + AT_rich Low_complexity Low_complexity 1 22 0 2321 85 0 0 chr6 91996188 91996483 -90418759 + AluY SINE Alu 1 295 -16 300 260 96 114 chr6 91996669 91996888 -90418354 + L1MC4 LINE L1 7826 8040 -2 1194 232 92 6 chr6 91997577 91997892 -90417350 + MLT1C LTR MaLR 126 467 0 1954 163 6 13 chr6 91998639 91998952 -90416290 + AluJb SINE Alu 1 311 -1 2419 91 0 3 chr6 91999285 91999592 -90415650 + AluSp SINE Alu 1 306 -7 1909 84 48 0 chr6 91999937 92000186 -90415056 + AluSg SINE Alu 1 261 -49 2200 57 4 11 chr6 92000268 92000549 -90414693 - AluY SINE Alu -8 303 25 25 0 0 0 chr6 92000603 92000628 -90414614 + AT_rich Low_complexity Low_complexity 1 25 0 1458 119 20 0 chr6 92001693 92001895 -90413347 + AluJb SINE Alu 1 206 -106 2240 101 3 28 chr6 92002100 92002418 -90412824 - AluSq SINE Alu -3 310 1 25 0 0 0 chr6 92004126 92004151 -90411091 + AT_rich Low_complexity Low_complexity 1 25 0 305 359 22 0 chr6 92004202 92004294 -90410948 + L2 LINE L2 3156 3249 -23 911 205 72 40 chr6 92004738 92004987 -90410255 + MIR SINE MIR 1 257 -5 247 296 0 0 chr6 92006913 92006994 -90408248 + GA-rich Low_complexity Low_complexity 1 81 0 295 193 6 18 chr6 92006994 92007124 -90408118 + (CGGGG)n Simple_repeat Simple_repeat 1 128 0 763 201 0 0 chr6 92007313 92007467 -90407775 + L1P LINE L1 4570 4723 -1423 215 31 31 0 chr6 92007700 92007732 -90407510 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 24 0 0 0 chr6 92007963 92007987 -90407255 + AT_rich Low_complexity Low_complexity 1 24 0 2231 84 7 17 chr6 92007987 92008283 -90406959 + AluSq SINE Alu 1 293 -20 386 152 0 38 chr6 92008283 92008362 -90406880 - L1PA7 LINE L1 -8 6146 6071 358 297 38 11 chr6 92008610 92008799 -90406443 - MIR SINE MIR -22 240 17 268 214 24 12 chr6 92009054 92009106 -90406136 + (TA)n Simple_repeat Simple_repeat 1 56 -29 1954 173 48 11 chr6 92009106 92009458 -90405784 + MLT1A1 LTR MaLR 1 365 0 268 214 24 12 chr6 92009458 92009489 -90405753 + (TA)n Simple_repeat Simple_repeat 56 85 0 1581 182 0 68 chr6 92009852 92010176 -90405066 - AluJo SINE Alu -10 302 1 194 239 22 0 chr6 92010359 92010405 -90404837 - L2 LINE L2 -2 3270 3224 2395 55 3 7 chr6 92010430 92010723 -90404519 + AluY SINE Alu 1 292 -19 1654 176 11 0 chr6 92010999 92011271 -90403971 - AluJo SINE Alu -9 303 29 346 328 50 25 chr6 92011281 92011479 -90403763 + MIR SINE MIR 39 241 -21 * 434 263 9 9 chr6 92011469 92011583 -90403659 + L2 LINE L2 3197 3310 -3 2414 85 7 0 chr6 92011672 92011978 -90403264 - AluSp SINE Alu -5 308 1 212 343 37 0 chr6 92012004 92012112 -90403130 - L3 LINE CR1 -2 1575 1464 233 237 89 74 chr6 92012160 92012295 -90402947 - L3 LINE CR1 -235 1342 1206 22 35 0 0 chr6 92012573 92012602 -90402640 + AT_rich Low_complexity Low_complexity 1 29 0 348 205 90 115 chr6 92012602 92012721 -90402521 + L1ME4a LINE L1 5699 5813 -308 598 244 0 8 chr6 92012721 92012840 -90402402 + FLAM_A SINE Alu 3 120 -13 348 205 90 115 chr6 92012840 92012920 -90402322 + L1ME4a LINE L1 5813 5893 -228 1958 136 174 8 chr6 92012938 92013305 -90401937 + MSTA LTR MaLR 1 428 0 2320 142 14 32 chr6 92013358 92013801 -90401441 + L1MA4 LINE L1 5865 6299 -1 21 0 0 0 chr6 92013801 92013822 -90401420 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 92013913 92013952 -90401290 + AT_rich Low_complexity Low_complexity 1 39 0 369 153 0 0 chr6 92013976 92014048 -90401194 + (CA)n Simple_repeat Simple_repeat 2 73 0 1363 165 26 37 chr6 92014249 92014522 -90400720 + AluSp SINE Alu 37 306 -7 378 130 0 0 chr6 92014532 92014586 -90400656 + MLT1B LTR MaLR 337 390 0 229 143 41 0 chr6 92015013 92015062 -90400180 + (CCCA)n Simple_repeat Simple_repeat 3 53 0 220 320 72 24 chr6 92015179 92015304 -90399938 + L2 LINE L2 2925 3055 -217 237 286 95 38 chr6 92016025 92016130 -90399112 - MER115 DNA AcHobo -574 119 9 2751 87 16 5 chr6 92016358 92016725 -90398517 - THE1C LTR MaLR -4 371 1 10044 107 36 51 chr6 92016725 92018327 -90396915 - THE1C-int LTR MaLR 0 1580 2 2396 105 68 3 chr6 92018329 92018680 -90396562 - THE1C LTR MaLR -1 374 1 1809 159 16 38 chr6 92019907 92020222 -90395020 + AluJb SINE Alu 1 308 -4 6161 132 170 127 chr6 92020706 92022332 -90392910 + pTR5 LTR ERV1 741 2437 -1 21 0 0 0 chr6 92022554 92022575 -90392667 + AT_rich Low_complexity Low_complexity 1 21 0 490 231 41 14 chr6 92023098 92023245 -90391997 + MER112 DNA MER1_type 98 248 -12 212 269 75 0 chr6 92023329 92023396 -90391846 - L3 LINE CR1 -1270 307 236 180 296 49 56 chr6 92023803 92023945 -90391297 + MIR SINE MIR 47 187 -75 222 138 35 35 chr6 92024173 92024231 -90391011 + (CGGGG)n Simple_repeat Simple_repeat 3 60 0 21 71 0 0 chr6 92024885 92024927 -90390315 + GC_rich Low_complexity Low_complexity 1 42 0 537 240 86 47 chr6 92025513 92025746 -90389496 - L2 LINE L2 -106 3207 2966 * 553 280 47 38 chr6 92025743 92025979 -90389263 - MIR SINE MIR -21 241 4 3303 72 5 0 chr6 92026146 92026576 -90388666 - L1PA8 LINE L1 0 6172 5741 1496 85 20 0 chr6 92026576 92026799 -90388443 + L1M LINE L1 5193 5419 -743 23 0 0 0 chr6 92027496 92027519 -90387723 + AT_rich Low_complexity Low_complexity 1 23 0 316 201 148 47 chr6 92027735 92027884 -90387358 - MIR SINE MIR -96 166 3 332 369 89 38 chr6 92027912 92028148 -90387094 - L2 LINE L2 0 3272 3025 1014 261 97 48 chr6 92028504 92028904 -90386338 - MER45C DNA AcHobo -325 628 149 1490 171 42 103 chr6 92028904 92029313 -90385929 + MLT1B LTR MaLR 5 388 -2 1014 261 97 48 chr6 92029313 92029470 -90385772 - MER45C DNA AcHobo -804 149 1 25 0 0 0 chr6 92030007 92030032 -90385210 + AT_rich Low_complexity Low_complexity 1 25 0 562 102 0 45 chr6 92031268 92031356 -90383886 - MLT1B LTR MaLR -303 87 4 1960 144 6 53 chr6 92031380 92031740 -90383502 - MER2 DNA MER2_type 0 344 2 2096 127 10 0 chr6 92032022 92032313 -90382929 + AluSx SINE Alu 1 294 -18 2323 104 0 7 chr6 92033041 92033348 -90381894 + AluSc SINE Alu 1 305 -4 23 0 0 0 chr6 92033780 92033803 -90381439 + AT_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr6 92033805 92033829 -90381413 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 1979 160 0 3 chr6 92033830 92034118 -90381124 - AluSx SINE Alu -25 287 1 3940 162 31 9 chr6 92034151 92034359 -90380883 - L1MB3 LINE L1 0 6183 5981 546 125 0 0 chr6 92034359 92034439 -90380803 - MADE1 DNA Mariner 0 80 1 3940 162 31 9 chr6 92034439 92034965 -90380277 - L1MB3 LINE L1 -202 5981 5433 2194 129 0 0 chr6 92035769 92036099 -90379143 + AluSx SINE Alu 1 330 0 1893 157 7 3 chr6 92037901 92038200 -90377042 + AluSx SINE Alu 1 300 -12 858 222 0 0 chr6 92038203 92038356 -90376886 + AluJb SINE Alu 137 289 -23 370 221 15 0 chr6 92040285 92040353 -90374889 + AluJ/FLAM SINE Alu 3 71 -231 343 305 0 0 chr6 92040496 92040591 -90374651 - MIR SINE MIR -56 206 112 417 145 0 0 chr6 92040609 92040671 -90374571 - MER58 DNA MER1_type 0 2420 2359 192 308 105 23 chr6 92040984 92041117 -90374125 + L2 LINE L2 3161 3304 -9 211 241 74 0 chr6 92041818 92041872 -90373370 - L2 LINE L2 -1 3271 3214 3316 244 109 11 chr6 92044424 92045844 -90369398 - L2 LINE L2 0 3313 1746 289 211 13 26 chr6 92045902 92045978 -90369264 - L2 LINE L2 -580 2734 2660 406 41 0 0 chr6 92047594 92047643 -90367599 - AluY SINE Alu -260 50 2 1462 221 100 12 chr6 92048761 92049160 -90366082 + MER57B LTR ERV1 1 434 0 1961 143 13 3 chr6 92050411 92050711 -90364531 + AluSx SINE Alu 1 303 -9 553 303 115 0 chr6 92050864 92051098 -90364144 - LTR33 LTR ERVL -248 273 13 2564 62 0 0 chr6 92051123 92051432 -90363810 - AluY SINE Alu -2 309 1 2010 162 0 0 chr6 92051648 92051944 -90363298 + AluJb SINE Alu 1 296 -16 1497 177 197 6 chr6 92052345 92052650 -90362592 + MLT2D LTR ERVL 1 381 -33 315 0 0 0 chr6 92052650 92052685 -90362557 + (CA)n Simple_repeat Simple_repeat 2 36 0 1497 177 197 6 chr6 92052685 92052724 -90362518 + MLT2D LTR ERVL 381 411 -3 192 364 118 20 chr6 92053272 92053467 -90361775 - MIR SINE MIR -48 214 1 11647 183 41 32 chr6 92053534 92055453 -90359789 - L1PB1 LINE L1 -2 6865 4965 1116 132 6 6 chr6 92055453 92055612 -90359630 - AluSx SINE Alu -153 159 1 11647 183 41 32 chr6 92055612 92060253 -90354989 - L1PB1 LINE L1 -1902 4965 6 303 269 223 8 chr6 92060296 92060426 -90354816 + MIR SINE MIR 23 180 -82 1416 64 96 50 chr6 92060428 92060648 -90354594 - MER30 DNA MER1_type 0 230 1 453 297 21 10 chr6 92061239 92061431 -90353811 - MER117 DNA MER1_type -3 194 1 331 267 38 9 chr6 92061617 92061722 -90353520 - MLT1I LTR MaLR -14 395 288 430 221 76 0 chr6 92061838 92061969 -90353273 - MLT1J2 LTR MaLR -290 160 20 1898 134 17 17 chr6 92062707 92062868 -90352374 - AluJb SINE Alu -14 298 135 2195 124 0 0 chr6 92062868 92063167 -90352075 - AluSx SINE Alu -13 299 1 1898 134 17 17 chr6 92063167 92063303 -90351939 - AluJb SINE Alu -176 136 1 288 340 68 32 chr6 92063830 92064080 -90351162 - L2 LINE L2 -159 3113 2855 594 239 112 0 chr6 92064160 92064365 -90350877 - L1M4 LINE L1 -1608 4538 4311 3223 212 66 19 chr6 92064374 92064495 -90350747 + L1ME2 LINE L1 4889 5003 -1161 814 215 91 0 chr6 92064495 92064681 -90350561 + MER3 DNA MER1_type 3 205 -4 3223 212 66 19 chr6 92064681 92065145 -90350097 + L1ME2 LINE L1 5003 5444 -720 2467 153 65 2 chr6 92065145 92065575 -90349667 + MSTB2 LTR MaLR 1 457 0 3223 212 66 19 chr6 92065575 92066173 -90349069 + L1ME2 LINE L1 5444 6133 -31 2731 131 7 33 chr6 92066264 92066665 -90348577 - MER65A LTR ERV1 0 445 56 2288 103 0 10 chr6 92066665 92066975 -90348267 - AluY SINE Alu 0 311 5 2731 131 7 33 chr6 92066975 92067030 -90348212 - MER65A LTR ERV1 -389 56 1 5467 208 33 14 chr6 92067030 92067998 -90347244 - MER65A-int LTR ERV1 0 4871 3922 1549 178 50 58 chr6 92067998 92068180 -90347062 + THE1C LTR MaLR 2 184 -191 1971 155 3 0 chr6 92068180 92068464 -90346778 + AluSx SINE Alu 1 285 -27 243 88 0 0 chr6 92068464 92068498 -90346744 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1549 178 50 58 chr6 92068498 92068691 -90346551 + THE1C LTR MaLR 182 375 0 5467 208 33 14 chr6 92068691 92068965 -90346277 - MER65A-int LTR ERV1 -949 3922 3606 672 213 136 37 chr6 92068966 92069268 -90345974 - MER65A-int LTR ERV1 -4425 2333 1836 686 153 8 48 chr6 92069270 92069377 -90345865 - AluJb SINE Alu -193 119 16 3187 128 6 23 chr6 92069377 92069899 -90345343 + LTR10D LTR ERV1 1 513 0 686 153 8 48 chr6 92069899 92069915 -90345327 - AluJb SINE Alu -296 16 1 7148 196 80 49 chr6 92069917 92071494 -90343748 - MER65A-int LTR ERV1 -2499 2372 846 537 184 0 0 chr6 92071494 92071703 -90343539 - L1PA8 LINE L1 0 6172 6062 2438 58 3 0 chr6 92071703 92071998 -90343244 - AluY SINE Alu -15 296 1 7148 196 80 49 chr6 92071998 92072640 -90342602 - MER65A-int LTR ERV1 -4024 847 83 2405 131 61 21 chr6 92072726 92073154 -90342088 - MER65A LTR ERV1 0 445 1 1749 128 6 22 chr6 92073681 92074032 -90341210 - MER4A LTR ERV1 0 664 261 568 104 31 10 chr6 92074032 92074128 -90341114 - MER4A LTR ERV1 -566 98 1 329 271 48 41 chr6 92075049 92075215 -90340027 + MIR SINE MIR 32 192 -65 428 306 104 12 chr6 92075286 92075459 -90339783 - MER5A DNA MER1_type 0 189 1 215 170 21 0 chr6 92076215 92076262 -90338980 + GA-rich Low_complexity Low_complexity 1 48 0 1259 79 103 28 chr6 92076368 92076582 -90338660 - MER30 DNA MER1_type 0 230 1 322 268 145 22 chr6 92076665 92076803 -90338439 + MIR3 SINE MIR 53 207 -1 2029 99 62 10 chr6 92077883 92078175 -90337067 - AluSx SINE Alu -5 307 1 746 189 75 0 chr6 92078367 92078526 -90336716 - LTR40a LTR ERVL 0 519 349 1114 197 52 12 chr6 92078533 92078963 -90336279 - MLT1D LTR MaLR -7 498 9 1274 206 24 113 chr6 92078965 92079271 -90335971 - MLT1D-int LTR MaLR 0 1371 1116 1478 172 4 4 chr6 92079271 92079509 -90335733 + MER8 DNA MER2_type 2 239 0 1274 206 24 113 chr6 92079509 92079654 -90335588 - MLT1D-int LTR MaLR -255 1116 960 252 232 0 18 chr6 92079879 92079935 -90335307 + GA-rich Low_complexity Low_complexity 2 56 0 365 205 35 70 chr6 92080326 92080497 -90334745 - LTR43 LTR ERV1 -306 296 132 620 310 5 0 chr6 92080647 92080834 -90334408 - MLT1D-int LTR MaLR -523 848 661 1894 188 13 52 chr6 92080884 92081342 -90333900 - MLT1D-int LTR MaLR -711 660 221 1281 83 0 24 chr6 92081342 92081511 -90333731 - AluSc SINE Alu -18 291 127 503 188 97 55 chr6 92081527 92081692 -90333550 - MLT1D-int LTR MaLR -1176 195 24 1277 226 23 28 chr6 92081706 92082060 -90333182 - LTR40a LTR ERVL -165 354 3 393 272 80 56 chr6 92082760 92083010 -90332232 - LTR68 LTR ERV1 -484 256 1 613 245 276 3 chr6 92083224 92083583 -90331659 - LTR16A1 LTR ERVL 0 457 1 688 211 41 14 chr6 92083658 92083805 -90331437 + L2 LINE L2 2670 2820 -494 436 301 60 5 chr6 92083951 92084150 -90331092 - L1MEd LINE L1 -5904 215 6 350 351 22 36 chr6 92084226 92084448 -90330794 - L1MEc LINE L1 -5388 1008 790 2281 253 39 68 chr6 92084602 92086073 -90329169 - L1ME1 LINE L1 -9 6157 4645 2139 180 46 12 chr6 92086073 92086485 -90328757 + MSTB LTR MaLR 1 426 0 2281 253 39 68 chr6 92086485 92086504 -90328738 - L1ME1 LINE L1 -1521 4645 4720 1961 166 10 0 chr6 92086504 92086812 -90328430 - AluSx SINE Alu -1 311 1 2281 253 39 68 chr6 92086812 92086899 -90328343 - L1ME1 LINE L1 -1445 4721 4633 1850 174 0 13 chr6 92086903 92087219 -90328023 - AluJb SINE Alu 0 312 1 25 0 0 0 chr6 92088390 92088415 -90326827 + AT_rich Low_complexity Low_complexity 1 25 0 1408 354 61 37 chr6 92088773 92089398 -90325844 + ERVL LTR ERVL 3397 4005 -1759 1950 144 85 15 chr6 92089398 92089738 -90325504 + THE1B LTR MaLR 1 364 0 1408 354 61 37 chr6 92089738 92090534 -90324708 + ERVL LTR ERVL 4005 4853 -911 273 290 20 10 chr6 92090870 92090970 -90324272 + ERVL LTR ERVL 5184 5284 -370 27 49 0 0 chr6 92092276 92092317 -90322925 + AT_rich Low_complexity Low_complexity 1 41 0 6255 51 31 38 chr6 92092487 92093356 -90321886 - SVA Other Other 0 1386 524 5194 81 53 5 chr6 92093540 92094318 -90320924 - SVA Other Other -555 831 17 1601 128 35 17 chr6 92094755 92095045 -90320197 + L1MB2 LINE L1 5877 6171 0 31 0 0 0 chr6 92096762 92096793 -90318449 + AT_rich Low_complexity Low_complexity 1 31 0 1272 29 23 6 chr6 92097566 92097738 -90317504 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1100 164 5 39 chr6 92097746 92097954 -90317288 - L1PA15 LINE L1 -21 6144 5944 29 47 0 0 chr6 92098762 92098805 -90316437 + AT_rich Low_complexity Low_complexity 1 43 0 204 159 0 23 chr6 92098858 92098902 -90316340 + T-rich Low_complexity Low_complexity 2 44 0 22 35 0 0 chr6 92099692 92099721 -90315521 + AT_rich Low_complexity Low_complexity 1 29 0 385 315 62 14 chr6 92100830 92100976 -90314266 - L2 LINE L2 -6 3266 3114 2151 140 0 0 chr6 92101632 92101984 -90313258 - AluSg1 SINE Alu 0 352 1 261 378 156 7 chr6 92102198 92102635 -90312607 - L2 LINE L2 -566 2748 2247 396 0 0 0 chr6 92103066 92103110 -90312132 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 371 306 70 19 chr6 92103737 92103894 -90311348 + MIR SINE MIR 10 174 -88 180 77 0 0 chr6 92104841 92104867 -90310375 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 262 261 109 22 chr6 92104869 92104961 -90310281 - L2 LINE L2 -15 3257 3158 599 213 49 11 chr6 92110023 92110173 -90305069 - MIR SINE MIR -1 261 104 466 245 101 7 chr6 92110214 92110353 -90304889 - MIR SINE MIR -64 198 47 26 0 0 0 chr6 92112665 92112691 -90302551 + AT_rich Low_complexity Low_complexity 1 26 0 317 25 0 0 chr6 92112691 92112731 -90302511 - L1PA6 LINE L1 -7 6147 6108 461 265 250 27 chr6 92112746 92113074 -90302168 + L2 LINE L2 2912 3312 -1 31 0 0 0 chr6 92113147 92113178 -90302064 + AT_rich Low_complexity Low_complexity 1 31 0 1504 154 4 0 chr6 92113186 92113432 -90301810 - L1PB4 LINE L1 -17 6139 5893 428 285 201 5 chr6 92113952 92114166 -90301076 - MIR SINE MIR 0 262 7 364 243 47 19 chr6 92114539 92114646 -90300596 + MER5B DNA MER1_type 1 110 -68 1253 158 0 40 chr6 92114877 92115099 -90300143 - AluJo SINE Alu -24 288 76 2774 137 14 0 chr6 92115644 92116066 -90299176 - MSTA LTR MaLR 0 428 1 25 65 0 0 chr6 92116460 92116506 -90298736 + AT_rich Low_complexity Low_complexity 1 46 0 379 335 19 25 chr6 92118664 92118822 -90296420 + MIR SINE MIR 100 256 -6 208 317 115 34 chr6 92118866 92119074 -90296168 - L2 LINE L2 -221 3051 2827 243 365 93 9 chr6 92119420 92119527 -90295715 + L2 LINE L2 3122 3237 -35 979 135 44 9 chr6 92119563 92119753 -90295489 - L1MA1 LINE L1 -1 6302 6103 243 139 0 0 chr6 92119752 92119795 -90295447 + L1M1 LINE L1 5480 5522 -780 * 331 303 152 6 chr6 92120612 92120790 -90294452 + MIR SINE MIR 49 252 -10 737 305 131 22 chr6 92121085 92121452 -90293790 - MLT1J2 LTR MaLR -41 409 3 186 350 41 10 chr6 92122042 92122139 -90293103 - L2 LINE L2 -50 3263 3164 897 215 0 6 chr6 92122914 92123091 -90292151 + MER5B DNA MER1_type 2 177 -1 187 273 221 0 chr6 92123163 92123240 -90292002 - L2 LINE L2 -37 3235 3142 1984 123 23 17 chr6 92123940 92124241 -90291001 - AluSx SINE Alu -9 303 1 22 0 0 0 chr6 92126811 92126833 -90288409 + AT_rich Low_complexity Low_complexity 1 22 0 533 260 88 9 chr6 92126918 92127157 -90288085 + MLT2F LTR ERVL 1 303 -360 756 219 12 0 chr6 92127157 92127317 -90287925 - FRAM SINE Alu -5 171 10 1478 214 16 29 chr6 92127317 92127388 -90287854 + MLT2F LTR ERVL 291 361 -302 2047 169 47 64 chr6 92127388 92127902 -90287340 - MLT1D LTR MaLR 0 505 1 1478 214 16 29 chr6 92127902 92128139 -90287103 + MLT2F LTR ERVL 361 595 -68 368 94 35 24 chr6 92128146 92128231 -90287011 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 264 306 14 0 chr6 92128410 92128482 -90286760 - MLT1I LTR MaLR -266 143 71 365 127 0 28 chr6 92130204 92130275 -90284967 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 691 205 0 0 chr6 92130332 92130454 -90284788 + FLAM_A SINE Alu 8 129 -13 269 296 214 8 chr6 92130832 92131075 -90284167 - L1M4 LINE L1 -1365 4781 4489 180 0 0 0 chr6 92131138 92131158 -90284084 + (CAA)n Simple_repeat Simple_repeat 2 21 0 27 49 0 0 chr6 92131243 92131284 -90283958 + AT_rich Low_complexity Low_complexity 1 41 0 249 33 0 0 chr6 92133060 92133090 -90282152 + (TCCCC)n Simple_repeat Simple_repeat 3 32 0 463 162 20 0 chr6 92133094 92133193 -90282049 + CT-rich Low_complexity Low_complexity 2 102 0 2192 114 0 3 chr6 92133250 92133548 -90281694 + AluSq SINE Alu 1 297 -16 2042 138 0 0 chr6 92133737 92134020 -90281222 - AluSx SINE Alu -29 283 1 747 291 17 30 chr6 92134087 92134321 -90280921 + MIR SINE MIR 31 261 -1 319 309 33 28 chr6 92134530 92134711 -90280531 - L1ME3A LINE L1 -1 6169 5988 1554 234 49 89 chr6 92134851 92135763 -90279479 - L1MC5 LINE L1 -446 7515 6640 2252 137 19 25 chr6 92135837 92136203 -90279039 - THE1B LTR MaLR 0 364 1 11261 100 7 13 chr6 92136203 92137303 -90277939 - THE1B-int LTR MaLR 0 1580 490 2456 77 0 3 chr6 92137303 92137615 -90277627 - AluY SINE Alu 0 311 1 11261 100 7 13 chr6 92137615 92138103 -90277139 - THE1B-int LTR MaLR -1090 490 1 2146 144 19 25 chr6 92138103 92138465 -90276777 - THE1B LTR MaLR 0 364 5 486 0 0 0 chr6 92138524 92138578 -90276664 + (TATTG)n Simple_repeat Simple_repeat 2 55 0 2049 118 0 0 chr6 92138581 92138853 -90276389 - AluSc SINE Alu -35 274 3 2262 158 20 47 chr6 92139272 92139779 -90275463 + L1MA8 LINE L1 5795 6287 -4 811 141 5 65 chr6 92140086 92140271 -90274971 - L1MB4 LINE L1 -1 6179 6006 5638 155 35 8 chr6 92140367 92142201 -90273041 - L1MA9 LINE L1 -5 6307 4425 4931 191 19 43 chr6 92142221 92143489 -90271753 - L1MA9 LINE L1 -2092 4054 2817 202 318 16 16 chr6 92143607 92143670 -90271572 + MIR3 SINE MIR 112 174 -34 218 180 67 0 chr6 92144471 92144560 -90270682 + (TA)n Simple_repeat Simple_repeat 1 95 0 4163 167 36 23 chr6 92145490 92145582 -90269660 + MER57-int LTR ERV1 6325 6414 -1123 2321 70 0 7 chr6 92145582 92145884 -90269358 - AluY SINE Alu -11 300 1 4163 167 36 23 chr6 92145884 92146559 -90268683 + MER57-int LTR ERV1 6414 7102 -435 724 155 86 35 chr6 92146559 92146733 -90268509 + MER57A LTR ERV1 209 391 -12 3300 71 23 2 chr6 92146895 92147330 -90267912 - MLT2A1 LTR ERVL 0 444 1 2015 152 126 5 chr6 92147464 92147846 -90267396 + MSTA LTR MaLR 1 428 0 1764 181 0 13 chr6 92148414 92148717 -90266525 + AluJo SINE Alu 5 303 -9 7002 165 39 35 chr6 92148872 92150552 -90264690 + L1MA6 LINE L1 3855 5540 -745 2685 158 12 46 chr6 92150552 92151118 -90264124 + L1MA6 LINE L1 5746 6294 -6 258 190 114 63 chr6 92151302 92151381 -90263861 - MLT1J2 LTR MaLR -309 141 59 321 279 118 15 chr6 92151519 92151655 -90263587 - MLT1L LTR MaLR -425 190 41 251 253 36 24 chr6 92152306 92152389 -90262853 + MIR3 SINE MIR 97 180 -28 230 0 33 0 chr6 92152464 92152494 -90262748 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1034 40 0 0 chr6 92152495 92152621 -90262621 - L1PA13 LINE L1 -12 6151 6026 1311 119 10 0 chr6 92153367 92153569 -90261673 + L1PA13 LINE L1 5960 6163 0 6291 95 22 4 chr6 92153955 92154981 -90260261 - L1PA13 LINE L1 0 6163 5129 22 0 0 0 chr6 92156003 92156025 -90259217 + AT_rich Low_complexity Low_complexity 1 22 0 486 271 102 47 chr6 92156555 92156759 -90258483 - MIR SINE MIR -6 256 33 284 279 15 0 chr6 92156982 92157050 -90258192 - L2 LINE L2 -2 3311 3243 2147 41 7 19 chr6 92157390 92157661 -90257581 + AluY SINE Alu 38 305 -6 21 0 0 0 chr6 92160146 92160167 -90255075 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr6 92160288 92160320 -90254922 + (TG)n Simple_repeat Simple_repeat 2 33 0 292 223 11 11 chr6 92160595 92160689 -90254553 + CT-rich Low_complexity Low_complexity 3 96 0 202 106 0 64 chr6 92162178 92162225 -90253017 + (TGGGGG)n Simple_repeat Simple_repeat 3 46 0 2579 250 52 33 chr6 92162608 92162843 -90252399 - L1ME1 LINE L1 -4 6231 6002 2629 114 15 0 chr6 92162843 92163237 -90252005 + L1PA12 LINE L1 5768 6167 -1 2579 250 52 33 chr6 92163237 92163298 -90251944 - L1ME1 LINE L1 -233 6002 5944 609 236 8 0 chr6 92163298 92163425 -90251817 + FLAM_C SINE Alu 1 128 -5 2579 250 52 33 chr6 92163425 92164088 -90251154 - L1ME1 LINE L1 -291 5944 5246 * 5002 237 68 62 chr6 92164087 92166047 -90249195 - L1ME1 LINE L1 -4372 2024 52 243 217 123 9 chr6 92166232 92166338 -90248904 - L1ME4a LINE L1 -18 6103 5986 1542 89 5 0 chr6 92166577 92166790 -90248452 + L1PA7 LINE L1 5926 6139 -15 901 274 109 54 chr6 92166986 92167391 -90247851 - L2 LINE L2 -4 3309 2883 421 304 109 53 chr6 92167804 92168218 -90247024 + MLT1K LTR MaLR 143 579 -9 198 0 0 0 chr6 92169007 92169029 -90246213 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 28 29 0 0 chr6 92170406 92170441 -90244801 + AT_rich Low_complexity Low_complexity 1 35 0 323 309 41 16 chr6 92170992 92171115 -90244127 - MER117 DNA MER1_type -28 169 44 21 0 0 0 chr6 92172379 92172400 -90242842 + AT_rich Low_complexity Low_complexity 1 21 0 447 35 0 0 chr6 92172447 92172504 -90242738 + (CA)n Simple_repeat Simple_repeat 2 58 0 370 155 12 12 chr6 92172781 92172865 -90242377 + MER53 DNA DNA 8 91 -98 236 204 0 65 chr6 92173213 92173306 -90241936 + (TTAA)n Simple_repeat Simple_repeat 2 88 0 410 299 31 31 chr6 92173306 92173433 -90241809 + L2 LINE L2 3168 3294 -19 1670 193 0 10 chr6 92173534 92173830 -90241412 - AluJb SINE Alu -19 293 1 442 299 59 59 chr6 92173876 92174000 -90241242 + L1MC4a LINE L1 4489 4612 -1534 2117 94 10 23 chr6 92174000 92174299 -90240943 - AluSq SINE Alu -18 295 1 442 299 59 59 chr6 92174299 92174498 -90240744 + L1MC4a LINE L1 4611 4812 -1334 368 301 33 47 chr6 92174532 92175095 -90240147 + L1MC4a LINE L1 4891 5315 -831 347 248 88 22 chr6 92175146 92175283 -90239959 + L1MC4a LINE L1 5737 5882 -1926 313 266 11 11 chr6 92175322 92175416 -90239826 + (TA)n Simple_repeat Simple_repeat 1 94 0 355 322 46 33 chr6 92177019 92177171 -90238071 + L2 LINE L2 3160 3313 0 464 278 172 0 chr6 92177172 92177352 -90237890 + MIR SINE MIR 49 259 -3 2182 141 36 53 chr6 92177803 92178272 -90236970 + L1MA7 LINE L1 5782 6242 -49 22 56 0 0 chr6 92178416 92178452 -90236790 + AT_rich Low_complexity Low_complexity 1 36 0 454 302 75 38 chr6 92178817 92179135 -90236107 - L1MEc LINE L1 -4122 2188 1859 314 306 92 48 chr6 92179216 92179735 -90235507 - L1MEc LINE L1 -4584 1726 1185 887 313 94 52 chr6 92179746 92180815 -90234427 - L1MEc LINE L1 -5004 1115 2 1909 159 71 6 chr6 92181094 92181445 -90233797 + L1MC3 LINE L1 6798 7171 -614 2708 86 0 8 chr6 92181455 92181827 -90233415 - L1PB1 LINE L1 -1 6150 5782 289 276 23 0 chr6 92181834 92181921 -90233321 - L1MC4 LINE L1 -1339 6703 6615 234 243 29 0 chr6 92181937 92182007 -90233235 + (TA)n Simple_repeat Simple_repeat 1 72 0 15828 158 54 13 chr6 92182007 92183305 -90231937 - L1P5 LINE L1 -360 6507 5264 2885 6 0 0 chr6 92183305 92183616 -90231626 - AluYa5 SINE Alu 0 311 1 15828 158 54 13 chr6 92183616 92188561 -90226681 - L1P5 LINE L1 -1603 5264 1 3003 197 38 0 chr6 92188568 92189177 -90226065 + L1MC3 LINE L1 7154 7785 0 281 328 8 30 chr6 92189511 92189525 -90225717 - MIR SINE MIR -90 172 159 1902 184 16 27 chr6 92189525 92189894 -90225348 - MLT1A1 LTR MaLR 0 365 1 281 328 8 30 chr6 92189894 92190013 -90225229 - MIR SINE MIR -103 159 42 562 244 53 0 chr6 92190042 92190173 -90225069 + MIR3 SINE MIR 56 193 -15 2270 161 32 48 chr6 92190722 92190843 -90224399 + MSTA LTR MaLR 1 122 -306 1786 163 152 11 chr6 92190843 92191218 -90224024 - MSTA LTR MaLR 0 428 1 2270 161 32 48 chr6 92191218 92191531 -90223711 + MSTA LTR MaLR 122 428 0 1820 320 88 57 chr6 92191851 92193351 -90221891 + L2 LINE L2 1729 3272 0 2530 172 78 8 chr6 92195419 92195941 -90219301 - MER89 LTR ERV1 0 559 1 28 29 0 0 chr6 92198375 92198410 -90216832 + AT_rich Low_complexity Low_complexity 1 35 0 357 145 0 0 chr6 92198886 92198948 -90216294 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 28 29 0 0 chr6 92199018 92199053 -90216189 + AT_rich Low_complexity Low_complexity 1 35 0 36 23 0 0 chr6 92199227 92199270 -90215972 + AT_rich Low_complexity Low_complexity 1 43 0 422 279 106 6 chr6 92199418 92199579 -90215663 + MIR SINE MIR 20 196 -66 306 277 102 58 chr6 92199628 92199765 -90215477 - MIR SINE MIR -10 252 110 412 264 10 33 chr6 92200169 92200356 -90214886 - MLT1J2 LTR MaLR 0 426 273 268 211 28 28 chr6 92201731 92201802 -90213440 - MER5A DNA MER1_type -76 113 43 2503 154 9 37 chr6 92201938 92202374 -90212868 + MSTB LTR MaLR 1 424 -2 200 267 50 50 chr6 92202450 92202570 -90212672 + MIR SINE MIR 31 150 -112 793 268 139 39 chr6 92202645 92203156 -90212086 + L2 LINE L2 2752 3311 -2 426 269 25 62 chr6 92204263 92204430 -90210812 - MIR SINE MIR -61 147 17 617 283 113 5 chr6 92204908 92205120 -90210122 + MIR SINE MIR 3 237 -25 1398 153 13 4 chr6 92205333 92205568 -90209674 - L1PA16 LINE L1 -9 6157 5921 615 182 99 0 chr6 92205573 92205694 -90209548 - FRAM SINE Alu -43 133 1 421 246 40 8 chr6 92205746 92205872 -90209370 + MARNA DNA Mariner 446 575 -11 609 115 0 0 chr6 92207017 92207113 -90208129 + (CA)n Simple_repeat Simple_repeat 2 97 0 285 89 0 0 chr6 92207114 92207159 -90208083 + (GA)n Simple_repeat Simple_repeat 1 45 0 231 88 0 0 chr6 92210426 92210460 -90204782 + (TAA)n Simple_repeat Simple_repeat 3 36 0 197 299 15 75 chr6 92211068 92211202 -90204040 - MIR SINE MIR -17 245 120 34606 35 9 0 chr6 92211417 92216457 -90198785 - L1PA3 LINE L1 0 6155 1078 854 10 0 0 chr6 92216441 92216540 -90198702 - L1PA3 LINE L1 -6047 99 1 * 1802 173 0 7 chr6 92216540 92216885 -90198357 - AluJb SINE Alu 0 343 1 476 303 76 15 chr6 92217815 92218013 -90197229 - MIR SINE MIR -51 211 2 521 152 43 0 chr6 92218353 92218445 -90196797 - L1PB4 LINE L1 -24 6132 6037 252 100 0 0 chr6 92218607 92218647 -90196595 + (TG)n Simple_repeat Simple_repeat 1 40 0 816 282 63 3 chr6 92220484 92220863 -90194379 + L1ME4a LINE L1 5717 6118 -3 2346 125 27 8 chr6 92220907 92221275 -90193967 + THE1C LTR MaLR 1 375 0 13111 179 19 9 chr6 92222021 92223289 -90191953 - L1M1 LINE L1 -743 6105 4851 2834 105 19 9 chr6 92223289 92223709 -90191533 + L1PA11 LINE L1 5750 6173 -1 13111 179 19 9 chr6 92223709 92224239 -90191003 - L1M1 LINE L1 -1997 4851 4328 351 0 0 0 chr6 92224239 92224278 -90190964 + (TG)n Simple_repeat Simple_repeat 2 40 0 13111 179 19 9 chr6 92224278 92225315 -90189927 - L1M1 LINE L1 -2520 4328 3323 10723 197 20 19 chr6 92225317 92225668 -90189574 - L1M1 LINE L1 -3587 3261 2912 1646 193 7 23 chr6 92225668 92225974 -90189268 - AluJo SINE Alu -11 301 1 10723 197 20 19 chr6 92225974 92228127 -90187115 - L1M1 LINE L1 -3936 2912 757 216 273 0 18 chr6 92228395 92228440 -90186802 + (TG)n Simple_repeat Simple_repeat 2 47 -8 776 188 143 0 chr6 92228440 92228594 -90186648 - MER45A DNA AcHobo -2 176 1 216 273 0 18 chr6 92228594 92228603 -90186639 + (TG)n Simple_repeat Simple_repeat 47 55 0 1583 100 4 4 chr6 92228604 92228833 -90186409 - L1PB2 LINE L1 0 6151 5923 862 216 0 0 chr6 92228841 92228994 -90186248 + L1M2 LINE L1 1282 1434 -5415 * 4602 108 10 2 chr6 92228990 92229802 -90185440 - L1PB2 LINE L1 -236 5915 5096 1337 224 4 8 chr6 92229831 92230090 -90185152 - L1M1 LINE L1 -6361 488 231 8686 175 17 13 chr6 92230090 92232087 -90183155 - L1M2 LINE L1 -696 5616 3611 6293 138 7 7 chr6 92232092 92233553 -90181689 + L1PB1 LINE L1 4690 6149 -2 2719 201 23 15 chr6 92233567 92233956 -90181286 - L1M2 LINE L1 -2522 3624 3226 2032 145 0 0 chr6 92233956 92234246 -90180996 - AluSx SINE Alu -22 290 1 2719 201 23 15 chr6 92234246 92234518 -90180724 - L1M2 LINE L1 -2920 3226 2958 34 0 0 0 chr6 92234641 92234675 -90180567 + AT_rich Low_complexity Low_complexity 1 34 0 733 352 47 24 chr6 92235302 92235956 -90179286 - L2 LINE L2 -106 3207 2534 312 242 30 0 chr6 92237302 92237368 -90177874 + L2 LINE L2 3204 3271 -1 21 57 0 0 chr6 92238385 92238420 -90176822 + AT_rich Low_complexity Low_complexity 1 35 0 1294 239 70 36 chr6 92240055 92240495 -90174747 - LTR16A1 LTR ERVL 0 457 3 218 371 38 0 chr6 92241007 92241112 -90174130 - MIR3 SINE MIR -34 174 66 318 180 16 16 chr6 92241418 92241479 -90173763 + L2 LINE L2 3251 3311 -2 183 323 15 31 chr6 92241487 92241552 -90173690 - MIR SINE MIR -100 108 45 800 148 0 0 chr6 92241669 92241797 -90173445 + L1PA15 LINE L1 6035 6162 -3 318 339 23 6 chr6 92242154 92242328 -90172914 + L1MEd LINE L1 4 180 -5939 835 76 49 0 chr6 92242336 92242480 -90172762 + GA-rich Low_complexity Low_complexity 2 152 0 262 218 59 20 chr6 92242747 92242848 -90172394 + L1ME4a LINE L1 6012 6116 -5 448 268 189 43 chr6 92242867 92243259 -90171983 + L1MCc LINE L1 23 471 -5952 298 340 85 14 chr6 92243512 92243642 -90171600 + L1MCc LINE L1 813 955 -5468 1761 48 22 9 chr6 92243642 92243873 -90171369 + L1PA7 LINE L1 5920 6153 -1 1869 87 30 0 chr6 92243882 92244147 -90171095 - L1PA10 LINE L1 -420 5748 5476 2672 78 25 38 chr6 92244157 92244555 -90170687 + L1PA10 LINE L1 5776 6168 0 1261 258 65 56 chr6 92244556 92245417 -90169825 + L1MCc LINE L1 953 1813 -4889 200 108 0 27 chr6 92245418 92245455 -90169787 + (GAA)n Simple_repeat Simple_repeat 1 36 0 441 178 0 0 chr6 92245547 92245637 -90169605 - MLT1D LTR MaLR 0 505 416 926 240 104 52 chr6 92245694 92246356 -90168886 + L1MCc LINE L1 2078 2714 -4227 22 56 0 0 chr6 92247129 92247165 -90168077 + AT_rich Low_complexity Low_complexity 1 36 0 182 352 23 0 chr6 92247501 92247589 -90167653 + L2 LINE L2 2948 3037 -235 593 299 123 5 chr6 92247780 92247991 -90167251 + MIR SINE MIR 24 259 -3 507 275 14 21 chr6 92248960 92249102 -90166140 - MIR SINE MIR -114 148 8 2353 107 3 0 chr6 92249553 92249862 -90165380 + AluSx SINE Alu 1 310 -2 379 289 46 60 chr6 92250376 92250594 -90164648 - MIR SINE MIR -14 248 34 26 0 0 0 chr6 92250998 92251024 -90164218 + AT_rich Low_complexity Low_complexity 1 26 0 2058 119 0 50 chr6 92251038 92251358 -90163884 + AluSx SINE Alu 1 304 -8 1987 146 4 0 chr6 92251504 92251813 -90163429 - AluSx SINE Alu 0 310 1 930 235 54 14 chr6 92252864 92253085 -90162157 + MIR SINE MIR 12 241 -21 340 222 44 0 chr6 92255446 92255536 -90159706 - MER103 DNA DNA -9 157 64 313 261 15 2 chr6 92255794 92255871 -90159371 + MIR SINE MIR 63 140 -68 22 56 0 0 chr6 92255992 92256028 -90159214 + AT_rich Low_complexity Low_complexity 1 36 0 207 269 60 0 chr6 92256813 92256880 -90158362 + MIR SINE MIR 184 254 -8 327 285 120 6 chr6 92258748 92258906 -90156336 + L1ME4a LINE L1 5709 5884 -237 2172 108 10 0 chr6 92264426 92264721 -90150521 - AluSx SINE Alu -14 298 1 271 293 79 18 chr6 92264828 92264959 -90150283 - MIR SINE MIR -78 184 45 648 215 38 8 chr6 92265314 92265480 -90149762 + MIR SINE MIR 52 218 -44 1046 223 73 82 chr6 92265481 92265947 -90149295 - MLT1C LTR MaLR 0 467 6 917 232 0 23 chr6 92266033 92266210 -90149032 + MER5B DNA MER1_type 1 173 -5 369 252 0 0 chr6 92270247 92270350 -90144892 - L1ME4a LINE L1 -211 5910 5808 25 75 0 0 chr6 92270508 92270561 -90144681 + AT_rich Low_complexity Low_complexity 1 53 0 591 156 15 30 chr6 92270921 92271056 -90144186 + L1MA4 LINE L1 6162 6294 -6 25 0 0 0 chr6 92271798 92271823 -90143419 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr6 92272414 92272451 -90142791 + AT_rich Low_complexity Low_complexity 1 37 0 846 215 42 33 chr6 92274193 92274407 -90140835 - MIR SINE MIR 0 262 47 399 248 7 51 chr6 92274762 92274899 -90140343 - L1ME4a LINE L1 0 6121 5991 31 76 0 0 chr6 92274995 92275061 -90140181 + AT_rich Low_complexity Low_complexity 1 66 0 322 306 136 41 chr6 92275443 92276057 -90139185 - L1ME4a LINE L1 -772 5374 4788 708 300 9 24 chr6 92277784 92277994 -90137248 - MIR SINE MIR -35 227 21 334 311 66 52 chr6 92278024 92278236 -90137006 - L1ME4a LINE L1 -423 5755 5541 214 319 32 11 chr6 92278279 92278373 -90136869 - L2 LINE L2 -22 3250 3155 692 132 0 8 chr6 92278743 92278864 -90136378 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 263 261 15 0 chr6 92279581 92279646 -90135596 + MIR SINE MIR 1 66 -196 241 335 81 27 chr6 92279807 92279954 -90135288 - MIR SINE MIR -64 144 29 367 331 32 32 chr6 92280252 92280376 -90134866 + L2 LINE L2 3149 3272 0 21 0 0 0 chr6 92280723 92280744 -90134498 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 92280899 92280927 -90134315 + AT_rich Low_complexity Low_complexity 1 28 0 192 97 0 0 chr6 92281553 92281584 -90133658 + (CA)n Simple_repeat Simple_repeat 2 32 0 872 283 35 0 chr6 92282414 92282640 -90132602 + MIR SINE MIR 3 236 -26 504 0 0 0 chr6 92282733 92282789 -90132453 + (TA)n Simple_repeat Simple_repeat 2 57 0 6576 58 2 0 chr6 92282989 92283814 -90131428 + L1PA8 LINE L1 5343 6169 -3 186 275 65 80 chr6 92284304 92284442 -90130800 + MIR3 SINE MIR 8 143 -65 529 232 141 32 chr6 92284633 92284704 -90130538 - MER110A LTR ERV1 -1 467 405 2160 90 14 0 chr6 92284704 92284982 -90130260 - AluSx SINE Alu -30 282 1 529 232 141 32 chr6 92284982 92285130 -90130112 - MER110A LTR ERV1 -63 405 224 317 351 155 20 chr6 92285724 92286182 -90129060 + L2 LINE L2 1745 2264 -1050 381 333 40 13 chr6 92287072 92287222 -90128020 + MIR SINE MIR 3 156 -106 502 227 34 8 chr6 92287307 92287426 -90127816 + MER94 DNA DNA 13 134 0 311 370 63 0 chr6 92288361 92288488 -90126754 + L2 LINE L2 3136 3270 -2 551 165 0 35 chr6 92289319 92289434 -90125808 + FRAM SINE Alu 66 176 0 193 308 57 70 chr6 92289514 92289741 -90125501 - L2 LINE L2 -213 3059 2836 1142 244 21 0 chr6 92289963 92290205 -90125037 + MIR SINE MIR 6 252 -10 553 265 78 51 chr6 92290231 92290488 -90124754 - L2 LINE L2 -936 2378 2115 285 29 0 0 chr6 92291679 92291713 -90123529 + (TC)n Simple_repeat Simple_repeat 1 34 0 219 36 0 0 chr6 92291712 92291740 -90123502 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 407 280 135 19 chr6 92292732 92292939 -90122303 + L2 LINE L2 3046 3276 -37 254 237 11 21 chr6 92293482 92293575 -90121667 + (TA)n Simple_repeat Simple_repeat 2 93 0 504 299 130 24 chr6 92293834 92294041 -90121201 - MIR SINE MIR -14 248 20 223 297 139 30 chr6 92294160 92294261 -90120981 + MIR3 SINE MIR 87 198 -10 25 31 0 0 chr6 92294285 92294317 -90120925 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr6 92294434 92294464 -90120778 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 92295882 92295918 -90119324 + AT_rich Low_complexity Low_complexity 1 36 0 979 265 55 87 chr6 92297576 92298014 -90117228 + L2 LINE L2 2890 3313 0 214 381 25 0 chr6 92298017 92298135 -90117107 + L2 LINE L2 3193 3313 0 4960 45 8 0 chr6 92298533 92299137 -90116105 + L1PA5 LINE L1 5546 6154 0 22 70 0 0 chr6 92299879 92299922 -90115320 + AT_rich Low_complexity Low_complexity 1 43 0 1183 250 75 44 chr6 92300860 92301288 -90113954 + MLT1C LTR MaLR 6 446 -21 229 223 209 108 chr6 92301352 92301417 -90113825 + L3 LINE CR1 1033 1090 -487 1951 155 3 0 chr6 92301417 92301714 -90113528 - AluJo SINE Alu -14 298 1 229 223 209 108 chr6 92301714 92301796 -90113446 + L3 LINE CR1 1090 1195 -382 1798 156 0 10 chr6 92301842 92302154 -90113088 + AluJb SINE Alu 1 309 0 32 26 0 0 chr6 92302333 92302372 -90112870 + AT_rich Low_complexity Low_complexity 1 39 0 260 234 162 18 chr6 92302464 92302575 -90112667 + MIR SINE MIR 62 188 -74 2099 171 47 42 chr6 92303900 92304349 -90110893 + MLT1D LTR MaLR 55 505 0 229 355 107 23 chr6 92304404 92304750 -90110492 - L2 LINE L2 -493 2821 2447 5805 100 7 15 chr6 92305796 92306243 -90108999 - THE1B-int LTR MaLR -774 806 366 2389 81 0 0 chr6 92306243 92306538 -90108704 + AluY SINE Alu 1 295 -16 5805 100 7 15 chr6 92306538 92306901 -90108341 - THE1B-int LTR MaLR -1214 366 2 2280 96 56 34 chr6 92306902 92307258 -90107984 - THE1B LTR MaLR 0 364 1 6427 148 6 1 chr6 92307258 92308235 -90107007 - ERVL-B2 LTR ERVL -608 5156 4175 * 6944 154 10 2 chr6 92308233 92309321 -90105921 - ERVL-B2 LTR ERVL -2049 3715 2619 1706 147 11 0 chr6 92309315 92309581 -90105661 - ERVL-B2 LTR ERVL -3057 2707 2439 * 5939 147 26 5 chr6 92309802 92311238 -90104004 - L1P4 LINE L1 -475 7137 5671 31566 104 17 59 chr6 92311259 92317690 -90097552 - L1PA7 LINE L1 -1 6153 12 4145 139 18 94 chr6 92317689 92317852 -90097390 - L1P4 LINE L1 -1901 5683 5509 * 2192 120 42 28 chr6 92317852 92318211 -90097031 + THE1B LTR MaLR 1 364 0 4145 139 18 94 chr6 92318211 92318665 -90096577 - L1P4 LINE L1 -2075 5509 5150 1996 166 0 6 chr6 92318665 92318979 -90096263 - AluSx SINE Alu 0 312 1 4145 139 18 94 chr6 92318979 92319240 -90096002 - L1P4 LINE L1 -2434 5150 4871 * 5479 200 30 18 chr6 92319222 92319299 -90095943 - L1P4 LINE L1 -5087 2497 2422 354 23 0 0 chr6 92319299 92319342 -90095900 + (TG)n Simple_repeat Simple_repeat 1 43 0 5479 200 30 18 chr6 92319342 92320458 -90094784 - L1P4 LINE L1 -5162 2422 483 2614 174 40 9 chr6 92320463 92321015 -90094227 - L1 LINE L1 -1113 5033 4465 1865 252 75 13 chr6 92321035 92321558 -90093684 - ERVL-B2 LTR ERVL -5188 576 22 2110 190 97 15 chr6 92321584 92322058 -90093184 - MLT2B2 LTR ERVL -2 513 1 24 32 0 0 chr6 92322470 92322501 -90092741 + AT_rich Low_complexity Low_complexity 1 31 0 568 137 88 0 chr6 92322541 92322643 -90092599 + MER33 DNA MER1_type 19 129 -195 1206 128 11 11 chr6 92322720 92322900 -90092342 - FRAM SINE Alu -1 175 1 7977 193 100 23 chr6 92322957 92323018 -90092224 + L1PB4 LINE L1 2795 2850 -3306 2155 118 3 3 chr6 92323018 92323315 -90091927 + AluSx SINE Alu 1 297 -15 7977 193 100 23 chr6 92323315 92324641 -90090601 + L1PB4 LINE L1 2850 4073 -2083 204 40 0 0 chr6 92324641 92324666 -90090576 + (CA)n Simple_repeat Simple_repeat 2 26 0 7977 193 100 23 chr6 92324666 92326391 -90088851 + L1PB4 LINE L1 4073 6154 -2 1014 187 54 143 chr6 92327105 92327533 -90087709 + MLT1B LTR MaLR 1 390 0 24 67 0 0 chr6 92327665 92327710 -90087532 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr6 92327887 92327910 -90087332 + AT_rich Low_complexity Low_complexity 1 23 0 216 274 36 60 chr6 92328491 92328575 -90086667 + MIR SINE MIR 170 251 -11 260 301 108 0 chr6 92328698 92328791 -90086451 - L2 LINE L2 -22 3250 3148 29 28 0 0 chr6 92329212 92329248 -90085994 + AT_rich Low_complexity Low_complexity 1 36 0 192 250 62 0 chr6 92329604 92329652 -90085590 - MIR SINE MIR -26 236 186 458 252 29 43 chr6 92329671 92329810 -90085432 + L2 LINE L2 3173 3309 -4 301 113 129 0 chr6 92330059 92330121 -90085121 + L1ME LINE L1 5709 5778 -343 558 296 27 27 chr6 92330132 92330352 -90084890 + MIR SINE MIR 19 238 -24 7056 47 56 0 chr6 92330352 92331403 -90083839 - L1PA7 LINE L1 0 6154 5077 29764 92 11 8 chr6 92331406 92335644 -90079598 - L1PA7 LINE L1 -1885 4261 12 5850 98 25 1 chr6 92335650 92336465 -90078777 - L1P3 LINE L1 -5627 834 1 333 0 0 0 chr6 92336575 92336612 -90078630 + (CA)n Simple_repeat Simple_repeat 2 38 0 229 286 0 0 chr6 92336646 92336702 -90078540 + (CATA)n Simple_repeat Simple_repeat 4 59 0 231 204 159 11 chr6 92336723 92336811 -90078431 + L1ME4a LINE L1 5947 6047 -74 2049 130 7 3 chr6 92337236 92337535 -90077707 + AluSx SINE Alu 1 300 -12 231 283 78 83 chr6 92337718 92337896 -90077346 + MLT1L LTR MaLR 32 208 -407 897 209 139 26 chr6 92337896 92338126 -90077116 - MSTD LTR MaLR 0 396 141 354 274 123 14 chr6 92338232 92338378 -90076864 + L2 LINE L2 3151 3312 -1 615 240 94 5 chr6 92339830 92340022 -90075220 + L1MEc LINE L1 37 245 -6151 498 230 9 9 chr6 92340035 92340148 -90075094 + L1MEc LINE L1 498 610 -5786 1204 230 69 8 chr6 92340757 92341183 -90074059 + MER34B LTR ERV1 64 565 0 1164 220 61 93 chr6 92341495 92342090 -90073152 + LTR49-int LTR ERV1 352 1615 -4648 1755 183 10 3 chr6 92342181 92342481 -90072761 - AluJo SINE Alu -10 302 1 1875 159 37 3 chr6 92342521 92342847 -90072395 - MER1B DNA MER1_type 0 337 1 9596 185 118 94 chr6 92343788 92347598 -90067644 + LTR49-int LTR ERV1 836 4734 -202 728 176 77 6 chr6 92347845 92348015 -90067227 + MER34B LTR ERV1 384 565 0 4296 143 26 8 chr6 92348520 92349287 -90065955 + L1MA4A LINE L1 5516 6296 -7 270 239 39 107 chr6 92349866 92349936 -90065306 - L1MC4 LINE L1 -141 7901 7828 1700 116 74 0 chr6 92349936 92350178 -90065064 + AluSx SINE Alu 35 294 -18 270 239 39 107 chr6 92350178 92350312 -90064930 - L1MC4 LINE L1 -214 7828 7711 201 242 65 32 chr6 92350705 92350767 -90064475 + L2 LINE L2 3153 3216 -56 27 62 0 0 chr6 92351004 92351052 -90064190 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr6 92354061 92354085 -90061157 + AT_rich Low_complexity Low_complexity 1 24 0 34 55 0 0 chr6 92354137 92354192 -90061050 + AT_rich Low_complexity Low_complexity 1 55 0 242 322 124 8 chr6 92355379 92355500 -90059742 - L2 LINE L2 -2 3311 3177 672 93 0 0 chr6 92355968 92356065 -90059177 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 276 254 58 87 chr6 92356238 92356376 -90058866 + MIR SINE MIR 119 252 -10 21 36 0 0 chr6 92356407 92356435 -90058807 + AT_rich Low_complexity Low_complexity 1 28 0 2158 171 59 7 chr6 92357182 92358399 -90056843 + L1PB4 LINE L1 4249 5680 -476 291 28 0 0 chr6 92358399 92358435 -90056807 + (CA)n Simple_repeat Simple_repeat 2 37 0 2074 134 26 0 chr6 92358435 92358777 -90056465 + L1PB4 LINE L1 5803 6153 -3 1944 124 28 10 chr6 92359045 92359336 -90055906 + AluSx SINE Alu 1 296 -16 510 256 85 65 chr6 92359846 92360092 -90055150 + MIR SINE MIR 11 261 -1 26 74 0 0 chr6 92360390 92360444 -90054798 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr6 92360682 92360725 -90054517 + AT_rich Low_complexity Low_complexity 1 43 0 228 35 0 0 chr6 92361174 92361203 -90054039 + (TA)n Simple_repeat Simple_repeat 1 29 0 1996 131 0 52 chr6 92361207 92361536 -90053706 - AluSx SINE Alu 0 312 1 21 36 0 0 chr6 92361910 92361938 -90053304 + AT_rich Low_complexity Low_complexity 1 28 0 771 286 76 64 chr6 92362690 92363238 -90052004 - L2 LINE L2 -4 3309 2762 200 326 54 11 chr6 92364223 92364315 -90050927 + L2 LINE L2 2965 3060 -212 240 343 0 0 chr6 92364502 92364569 -90050673 - L2 LINE L2 -90 3182 3116 476 242 96 22 chr6 92365156 92365334 -90049908 + L2 LINE L2 2554 2744 -570 1138 115 6 0 chr6 92365338 92365495 -90049747 + AluSx SINE Alu 1 158 -154 6947 56 11 0 chr6 92365499 92366550 -90048692 + L1PA8 LINE L1 5133 6192 0 744 247 137 22 chr6 92366574 92366914 -90048328 + L2 LINE L2 2773 3150 -163 992 300 110 14 chr6 92367873 92368300 -90046942 + L2 LINE L2 2842 3309 -4 339 244 24 0 chr6 92368737 92368819 -90046423 - L1MEd LINE L1 -4871 1248 1165 356 309 110 0 chr6 92368841 92368977 -90046265 - L1MEd LINE L1 -5027 1092 942 804 243 89 91 chr6 92369112 92369561 -90045681 - L1MEd LINE L1 -5339 780 333 471 219 46 20 chr6 92369599 92369750 -90045492 - L1MEd LINE L1 -5933 186 32 275 284 20 81 chr6 92370186 92370334 -90044908 + MER20B DNA MER1_type 7 145 -638 191 277 43 0 chr6 92370519 92370566 -90044676 - L2 LINE L2 -86 3186 3138 26 82 0 0 chr6 92370864 92370925 -90044317 + AT_rich Low_complexity Low_complexity 1 61 0 27 0 0 0 chr6 92371322 92371349 -90043893 + AT_rich Low_complexity Low_complexity 1 27 0 2572 61 0 3 chr6 92371746 92372057 -90043185 + AluY SINE Alu 1 310 -1 795 187 104 35 chr6 92372644 92372874 -90042368 + LTR16A1 LTR ERVL 210 455 -2 289 186 29 118 chr6 92374885 92374987 -90040255 - Tigger5 DNA MER2_type 0 2323 2231 310 217 0 0 chr6 92375022 92375082 -90040160 - Tigger5 DNA MER2_type -13 2310 2251 538 247 79 1 chr6 92375086 92375238 -90040004 - MIR SINE MIR -28 180 13 2275 107 0 3 chr6 92375341 92375639 -90039603 - AluSx SINE Alu -15 297 1 31 0 0 0 chr6 92376329 92376360 -90038882 + AT_rich Low_complexity Low_complexity 1 31 0 31 82 0 0 chr6 92376785 92376858 -90038384 + AT_rich Low_complexity Low_complexity 1 73 0 26 50 0 0 chr6 92377563 92377603 -90037639 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr6 92377787 92377829 -90037413 + AT_rich Low_complexity Low_complexity 1 42 0 1323 186 0 4 chr6 92378191 92378427 -90036815 + MER46A DNA MER2_type 1 235 -1 261 179 128 26 chr6 92378458 92378536 -90036706 - HAL1b LINE L1 -655 693 608 352 85 0 34 chr6 92378539 92378598 -90036644 - Alu SINE Alu -1 299 243 841 207 55 5 chr6 92378607 92378824 -90036418 - MER33 DNA MER1_type -96 228 1 348 275 113 19 chr6 92378990 92379150 -90036092 - MIR SINE MIR -86 176 2 1993 144 3 3 chr6 92379192 92379491 -90035751 - AluSq SINE Alu -14 299 1 381 304 20 0 chr6 92379505 92379607 -90035635 - MIR3 SINE MIR -51 157 54 21 36 0 0 chr6 92379668 92379696 -90035546 + AT_rich Low_complexity Low_complexity 1 28 0 930 209 76 18 chr6 92379788 92380118 -90035124 + L1MC5 LINE L1 7553 7901 -60 24 32 0 0 chr6 92380132 92380163 -90035079 + AT_rich Low_complexity Low_complexity 1 31 0 7093 39 28 43 chr6 92380313 92381321 -90033921 - L1PA5 LINE L1 -2 6152 5153 14631 42 1 5 chr6 92381325 92383154 -90032088 + L1PA5 LINE L1 3317 5138 -1008 803 226 144 84 chr6 92383231 92383969 -90031273 + HAL1b LINE L1 556 1337 -11 305 266 118 65 chr6 92384329 92384498 -90030744 + MLT1J LTR MaLR 277 454 -57 1242 249 154 21 chr6 92384614 92385035 -90030207 + L2 LINE L2 2130 2606 -708 26 0 0 0 chr6 92387289 92387315 -90027927 + AT_rich Low_complexity Low_complexity 1 26 0 377 278 40 0 chr6 92387428 92387554 -90027688 + MLT1J2 LTR MaLR 5 135 -315 259 27 0 0 chr6 92388028 92388065 -90027177 + AluY SINE Alu 263 299 -2 5333 99 52 7 chr6 92388197 92389004 -90026238 - L1PA15 LINE L1 -1 6164 5322 1023 79 0 0 chr6 92389004 92389131 -90026111 - AluSc SINE Alu -19 290 164 3800 108 14 194 chr6 92389131 92390759 -90024483 + pTR5 LTR ERV1 743 2606 0 1335 78 6 0 chr6 92390759 92390925 -90024317 - AluSc SINE Alu -142 167 1 2262 158 20 47 chr6 92391341 92391848 -90023394 + L1MA8 LINE L1 5795 6287 -4 804 141 5 65 chr6 92392156 92392340 -90022902 - L1MB4 LINE L1 -2 6178 6006 5638 155 35 8 chr6 92392436 92394270 -90020972 - L1MA9 LINE L1 -5 6307 4425 4941 190 19 43 chr6 92394290 92395558 -90019684 - L1MA9 LINE L1 -2092 4054 2817 202 318 16 16 chr6 92395676 92395739 -90019503 + MIR3 SINE MIR 112 174 -34 218 180 67 0 chr6 92396540 92396629 -90018613 + (TA)n Simple_repeat Simple_repeat 2 96 0 4163 167 36 23 chr6 92397559 92397651 -90017591 + MER57-int LTR ERV1 6325 6414 -1123 2091 84 10 7 chr6 92397651 92397950 -90017292 - AluY SINE Alu -11 300 1 4163 167 36 23 chr6 92397950 92398625 -90016617 + MER57-int LTR ERV1 6414 7102 -435 707 161 86 35 chr6 92398625 92398799 -90016443 + MER57A LTR ERV1 209 391 -12 3300 71 23 2 chr6 92398961 92399396 -90015846 - MLT2A1 LTR ERVL 0 444 1 2015 152 126 5 chr6 92399530 92399912 -90015330 + MSTA LTR MaLR 1 428 0 1764 181 0 13 chr6 92400481 92400784 -90014458 + AluJo SINE Alu 5 303 -9 3502 176 75 8 chr6 92400939 92401691 -90013551 + L1 LINE L1 3855 4656 -1490 948 238 124 35 chr6 92402267 92402662 -90012580 + MLT1J1 LTR MaLR 3 432 -14 482 210 215 51 chr6 92403210 92403424 -90011818 + MIR SINE MIR 13 261 -1 2218 119 0 0 chr6 92404543 92404853 -90010389 + AluSx SINE Alu 1 310 -2 2273 95 0 3 chr6 92404927 92405223 -90010019 - AluSc SINE Alu -14 295 1 183 305 171 64 chr6 92405765 92406549 -90008693 + L2 LINE L2 1617 2484 -830 2399 123 8 16 chr6 92406555 92406922 -90008320 + THE1B LTR MaLR 1 364 0 2277 112 0 13 chr6 92408002 92408315 -90006927 + AluSx SINE Alu 1 309 -3 2084 131 0 7 chr6 92408732 92409051 -90006191 - AluSx SINE Alu 0 317 1 221 203 108 14 chr6 92409272 92409346 -90005896 - MIR SINE MIR -64 144 64 26 0 0 0 chr6 92409440 92409466 -90005776 + AT_rich Low_complexity Low_complexity 1 26 0 627 254 38 19 chr6 92409819 92410028 -90005214 + L1ME3A LINE L1 5957 6169 -1 2025 104 11 11 chr6 92410440 92410745 -90004497 + AluY SINE Alu 1 305 0 21 0 0 0 chr6 92411106 92411127 -90004115 + AT_rich Low_complexity Low_complexity 1 21 0 2337 75 0 0 chr6 92411468 92411785 -90003457 + AluY SINE Alu 1 317 0 259 200 33 0 chr6 92411840 92411900 -90003342 + (TATG)n Simple_repeat Simple_repeat 3 64 0 1643 100 0 9 chr6 92412987 92413218 -90002024 - AluSg/x SINE Alu 0 310 82 1703 188 3 23 chr6 92413920 92414223 -90001019 - AluJb SINE Alu -15 297 1 21415 50 5 0 chr6 92414708 92418198 -89997044 + L1PA6 LINE L1 2647 6151 -3 764 250 79 8 chr6 92419563 92419803 -89995439 + MIR SINE MIR 2 258 -4 2374 83 3 3 chr6 92419845 92420146 -89995096 - AluSq SINE Alu -12 301 1 345 306 85 34 chr6 92421008 92421302 -89993940 + L1MEc LINE L1 278 586 -5810 2382 263 95 34 chr6 92421398 92421718 -89993524 + L1MEc LINE L1 713 1012 -5384 2323 105 3 0 chr6 92421718 92422022 -89993220 + AluY SINE Alu 1 305 -6 2382 263 95 34 chr6 92422022 92423253 -89991989 + L1MEc LINE L1 1012 2358 -4038 21 0 0 0 chr6 92423500 92423521 -89991721 + AT_rich Low_complexity Low_complexity 1 21 0 900 235 99 72 chr6 92424304 92424469 -89990773 + LTR40b LTR ERVL 2 161 -301 2459 55 0 3 chr6 92424469 92424758 -89990484 + AluY SINE Alu 2 289 -22 900 235 99 72 chr6 92424758 92425024 -89990218 + LTR40b LTR ERVL 161 460 -2 21 36 0 0 chr6 92426023 92426051 -89989191 + AT_rich Low_complexity Low_complexity 1 28 0 600 221 35 66 chr6 92427088 92427346 -89987896 + L1MC5 LINE L1 7621 7870 -91 186 270 225 18 chr6 92427468 92427579 -89987663 - L2 LINE L2 -5 3308 3175 1231 272 60 46 chr6 92427579 92428130 -89987112 - L2 LINE L2 -11 3302 2743 1279 281 98 10 chr6 92428130 92428539 -89986703 - L2 LINE L2 -2522 792 348 300 353 66 31 chr6 92428565 92428902 -89986340 - L2 LINE L2 -222 3091 2744 189 333 128 10 chr6 92430196 92430298 -89984944 - L2 LINE L2 -9 3263 3150 1439 192 15 11 chr6 92430815 92431075 -89984167 + AluJo SINE Alu 1 261 -51 247 196 0 0 chr6 92432441 92432487 -89982755 + L2 LINE L2 3189 3234 -38 305 333 93 32 chr6 92432606 92432951 -89982291 + L2 LINE L2 1817 2182 -1132 461 255 198 14 chr6 92432957 92433169 -89982073 - MIR SINE MIR -6 256 6 183 156 0 0 chr6 92433232 92433264 -89981978 + (CA)n Simple_repeat Simple_repeat 1 32 0 2354 93 0 0 chr6 92433690 92434040 -89981202 + AluSg SINE Alu 1 310 0 3114 181 60 38 chr6 92434050 92434096 -89981146 + L1MB7 LINE L1 5483 5527 -657 2015 147 3 0 chr6 92434096 92434396 -89980846 + AluSx SINE Alu 1 301 -11 3114 181 60 38 chr6 92434396 92435036 -89980206 + L1MB7 LINE L1 5527 6184 0 1653 122 50 97 chr6 92435634 92435996 -89979246 - MER7A DNA MER2_type -3 343 1 625 325 97 32 chr6 92436026 92436623 -89978619 - L2 LINE L2 -4 3309 2671 270 363 70 0 chr6 92439028 92439229 -89976013 + L2 LINE L2 1527 1741 -1573 2156 109 30 7 chr6 92439500 92439839 -89975403 - AluSg SINE Alu 0 346 1 765 333 117 14 chr6 92439872 92440292 -89974950 + L2 LINE L2 2395 2857 -457 803 158 33 105 chr6 92441663 92441950 -89973292 + L1MC/D LINE L1 5177 5447 -743 674 243 12 40 chr6 92441954 92442127 -89973115 + L1MD2 LINE L1 6015 6182 -177 30 0 0 0 chr6 92442747 92442777 -89972465 + AT_rich Low_complexity Low_complexity 1 30 0 392 343 92 32 chr6 92443290 92443554 -89971688 + LTR16C LTR ERVL 89 383 -108 303 49 0 0 chr6 92443554 92443595 -89971647 + (TC)n Simple_repeat Simple_repeat 1 41 0 392 343 92 32 chr6 92443595 92443700 -89971542 + LTR16C LTR ERVL 383 480 -11 1448 350 52 47 chr6 92443729 92445234 -89970008 + HERV16 LTR ERVL 19 1681 -3818 303 28 0 0 chr6 92445234 92445270 -89969972 + (TG)n Simple_repeat Simple_repeat 1 36 0 1448 350 52 47 chr6 92445270 92445672 -89969570 + HERV16 LTR ERVL 1681 2079 -3420 892 321 45 20 chr6 92445674 92446070 -89969172 + ERVL LTR ERVL 1948 2353 -3411 672 337 26 4 chr6 92446112 92446376 -89968866 + ERVL LTR ERVL 2610 2879 -2885 569 311 42 21 chr6 92446551 92446834 -89968408 + ERVL LTR ERVL 3100 3388 -2376 17344 76 34 2 chr6 92446844 92449902 -89965340 + L1PA7 LINE L1 2793 5946 -208 1742 173 29 3 chr6 92552663 92552976 -89862266 + MLT1A1 LTR MaLR 1 321 -44 480 317 14 39 chr6 92553119 92553403 -89861839 - MLT2A2 LTR ERVL -2 661 385 1441 179 29 10 chr6 92553409 92553721 -89861521 - MLT1A1 LTR MaLR 0 365 48 1272 172 27 15 chr6 92553876 92554138 -89861104 - MLT2A2 LTR ERVL -187 266 2 928 288 89 68 chr6 92554139 92554789 -89860453 - L1 LINE L1 -2410 3736 3073 3902 120 29 35 chr6 92554908 92555623 -89859619 + MER50 LTR ERV1 1 711 -23 379 305 100 11 chr6 92555625 92555815 -89859427 - L1 LINE L1 -3118 3028 2822 2455 151 35 60 chr6 92555815 92556353 -89858889 - LTR26B LTR ERV1 -6 525 1 350 290 157 66 chr6 92556354 92556780 -89858462 - L1 LINE L1 -3317 2829 2354 1849 118 3 88 chr6 92556780 92557111 -89858131 - AluSx SINE Alu -9 303 1 350 290 157 66 chr6 92557111 92557156 -89858086 - L1 LINE L1 -3792 2354 2315 953 193 39 65 chr6 92557287 92557593 -89857649 - L1ME2 LINE L1 -50 6114 5817 201 121 0 0 chr6 92557618 92557651 -89857591 + (CATTA)n Simple_repeat Simple_repeat 3 35 0 684 234 133 32 chr6 92557713 92558029 -89857213 + MER7A DNA MER2_type 1 346 0 367 223 246 17 chr6 92558137 92558312 -89856930 + MIR SINE MIR 20 234 -28 27 29 0 0 chr6 92558381 92558415 -89856827 + AT_rich Low_complexity Low_complexity 1 34 0 191 88 29 0 chr6 92558895 92558929 -89856313 + (TAA)n Simple_repeat Simple_repeat 1 35 0 219 320 0 27 chr6 92558930 92559005 -89856237 - MIR SINE MIR -8 254 182 368 357 55 20 chr6 92559317 92559516 -89855726 - MIR SINE MIR 0 262 57 770 219 144 23 chr6 92559524 92559739 -89855503 - MIR SINE MIR -1 261 21 255 352 0 0 chr6 92560556 92560644 -89854598 + L2 LINE L2 2335 2422 -892 555 276 38 17 chr6 92561247 92561486 -89853756 - MER102b DNA MER1_type -13 328 85 287 422 17 0 chr6 92561588 92561768 -89853474 + L2 LINE L2 2557 2739 -575 183 322 91 50 chr6 92561949 92562070 -89853172 + L2 LINE L2 2898 3023 -249 209 320 13 13 chr6 92562243 92562321 -89852921 + L2 LINE L2 3179 3256 -16 2177 116 20 0 chr6 92563442 92563745 -89851497 - AluSc SINE Alu 0 309 1 1574 179 27 7 chr6 92563969 92564266 -89850976 - AluJb SINE Alu -5 307 5 423 267 97 42 chr6 92564360 92564525 -89850717 - L2 LINE L2 -36 3277 3104 322 289 113 25 chr6 92564534 92564738 -89850504 - L2 LINE L2 -1281 2033 1812 2909 13 0 0 chr6 92564916 92565234 -89850008 - AluYb8 SINE Alu 0 318 1 1812 167 58 0 chr6 92566972 92567091 -89848151 + AluJo SINE Alu 1 112 -200 234 0 0 0 chr6 92567091 92567117 -89848125 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 1812 167 58 0 chr6 92567117 92567291 -89847951 + AluJo SINE Alu 112 311 -1 238 191 21 0 chr6 92567471 92567518 -89847724 - L2 LINE L2 -1 3271 3224 444 248 81 27 chr6 92567521 92567743 -89847499 - HAL1 LINE L1 -199 2308 2075 540 273 161 15 chr6 92567763 92567968 -89847274 + MIR SINE MIR 2 236 -26 921 249 60 72 chr6 92568015 92568685 -89846557 - HAL1 LINE L1 -816 1691 1030 * 5429 92 11 37 chr6 92568684 92569541 -89845701 - L1PA13 LINE L1 -2 6161 5328 249 234 16 16 chr6 92569780 92569844 -89845398 - HAL1 LINE L1 -2115 392 329 364 271 41 37 chr6 92569967 92570208 -89845034 + MER41B LTR ERV1 55 430 -205 484 317 18 90 chr6 92570433 92570767 -89844475 - HAL1 LINE L1 -2197 310 1 220 236 36 18 chr6 92570796 92570851 -89844391 - L2 LINE L2 -8 3264 3209 251 267 0 8 chr6 92571104 92571235 -89844007 + (TG)n Simple_repeat Simple_repeat 1 130 0 264 77 0 0 chr6 92571281 92571320 -89843922 + (TG)n Simple_repeat Simple_repeat 2 40 0 270 0 0 0 chr6 92573060 92573090 -89842152 + (TG)n Simple_repeat Simple_repeat 2 31 0 2115 103 0 0 chr6 92574410 92574711 -89840531 - L1PA13 LINE L1 -3 6160 5860 800 186 36 0 chr6 92574730 92574897 -89840345 - MER115 DNA AcHobo -32 661 489 2122 102 0 3 chr6 92575616 92575924 -89839318 - AluSg SINE Alu 0 307 1 332 289 109 8 chr6 92576212 92576340 -89838902 - MIR SINE MIR -5 257 117 1026 118 18 18 chr6 92576629 92576799 -89838443 - L1PA15 LINE L1 -6 6159 5990 502 245 161 0 chr6 92577909 92578052 -89837190 - MIR SINE MIR 0 262 97 22 0 0 0 chr6 92578297 92578319 -89836923 + AT_rich Low_complexity Low_complexity 1 22 0 309 248 133 0 chr6 92578750 92578858 -89836384 + MIR SINE MIR 30 153 -55 1596 166 0 59 chr6 92578878 92579185 -89836057 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr6 92579185 92579207 -89836035 + AT_rich Low_complexity Low_complexity 1 22 0 582 244 72 22 chr6 92580318 92580498 -89834744 - MLT1A2 LTR MaLR -13 361 173 370 98 16 0 chr6 92580498 92580559 -89834683 + (GA)n Simple_repeat Simple_repeat 2 63 0 249 314 152 0 chr6 92581548 92581653 -89833589 - L2 LINE L2 -5 3267 3147 21 0 0 0 chr6 92582081 92582102 -89833140 + AT_rich Low_complexity Low_complexity 1 21 0 365 291 76 4 chr6 92583038 92583164 -89832078 + MIR SINE MIR 19 153 -55 251 263 26 0 chr6 92583165 92583241 -89832001 - MER112 DNA MER1_type 0 260 183 357 24 0 0 chr6 92583258 92583282 -89831960 + (GGATG)n Simple_repeat Simple_repeat 1 66 0 357 24 0 0 chr6 92583282 92583324 -89831918 + (GGATG)n Simple_repeat Simple_repeat 5 46 0 186 150 0 0 chr6 92583767 92583807 -89831435 + (TG)n Simple_repeat Simple_repeat 2 41 0 182 257 0 0 chr6 92583857 92583892 -89831350 + MIR3 SINE MIR 151 185 -23 270 308 13 0 chr6 92584422 92584500 -89830742 + L2 LINE L2 3226 3304 -9 496 227 45 8 chr6 92584707 92584839 -89830403 + L2 LINE L2 1979 2115 -1199 754 149 45 0 chr6 92584857 92584991 -89830251 - MER63 DNA MER1_type -296 766 1 419 277 39 44 chr6 92585262 92585674 -89829568 - L1MDa LINE L1 -4642 2079 1647 216 0 0 0 chr6 92585707 92585731 -89829511 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 298 289 50 21 chr6 92585736 92586121 -89829121 - L1PA2 LINE L1 -2 6136 855 327 349 36 5 chr6 92586187 92586379 -89828863 - L1MDa LINE L1 -5359 1171 974 551 89 10 30 chr6 92587009 92587110 -89828132 - L1MA9 LINE L1 0 6312 6214 829 240 10 10 chr6 92588968 92589160 -89826082 - MIR SINE MIR -16 246 55 237 178 0 0 chr6 92589938 92589983 -89825259 + (TA)n Simple_repeat Simple_repeat 1 45 0 2462 77 0 3 chr6 92593058 92593357 -89821885 - AluSc SINE Alu -11 298 1 244 202 0 75 chr6 92593532 92593626 -89821616 + MER112 DNA MER1_type 143 229 -31 195 42 0 0 chr6 92593860 92593884 -89821358 + (A)n Simple_repeat Simple_repeat 1 24 0 288 253 51 0 chr6 92594236 92594315 -89820927 - L1ME4a LINE L1 -48 6073 5991 21 71 0 0 chr6 92594377 92594419 -89820823 + AT_rich Low_complexity Low_complexity 1 42 0 441 243 58 26 chr6 92594436 92594625 -89820617 - L1ME4a LINE L1 -320 5801 5607 312 252 82 14 chr6 92596043 92596189 -89819053 - MLT1L LTR MaLR -341 170 4 1861 147 10 33 chr6 92596689 92596995 -89818247 + AluSq SINE Alu 1 299 -14 40821 50 3 3 chr6 92596995 92603151 -89812091 + L1PA4 LINE L1 4 6155 0 191 308 87 10 chr6 92603753 92603857 -89811385 + MIR SINE MIR 65 176 -86 236 323 108 0 chr6 92603864 92603957 -89811285 - L2 LINE L2 -10 3262 3160 345 125 0 0 chr6 92605465 92605521 -89809721 + (TG)n Simple_repeat Simple_repeat 1 56 0 184 171 24 0 chr6 92605654 92605694 -89809548 - L2 LINE L2 0 3313 3273 204 357 60 0 chr6 92605694 92605778 -89809464 + MIR SINE MIR 4 92 -170 904 288 4 16 chr6 92605858 92606108 -89809134 + MIR SINE MIR 6 252 -10 646 157 14 57 chr6 92607815 92607955 -89807287 + Charlie5 DNA MER1_type 6 139 -2473 847 189 79 0 chr6 92607969 92608197 -89807045 + Charlie5 DNA MER1_type 2379 2624 0 327 49 0 0 chr6 92608536 92608577 -89806665 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 25 0 0 0 chr6 92609240 92609265 -89805977 + AT_rich Low_complexity Low_complexity 1 25 0 469 63 0 0 chr6 92609297 92609360 -89805882 - Alu SINE Alu -12 297 235 5018 122 30 8 chr6 92609360 92610123 -89805119 - LTR17 LTR ERV1 0 780 1 2242 68 0 0 chr6 92610123 92610415 -89804827 - HERV17 LTR ERV1 0 8626 8335 304 26 0 0 chr6 92610405 92610444 -89804798 - HERV17 LTR ERV1 -1078 7548 7510 * 39895 67 10 2 chr6 92610440 92615778 -89799464 - HERV17 LTR ERV1 -1479 7147 1772 2716 64 3 34 chr6 92615881 92616269 -89798973 - HERV17 LTR ERV1 -6716 1910 1535 255 197 212 0 chr6 92616283 92616349 -89798893 + LTR8 LTR ERV1 174 253 -438 5234 90 34 13 chr6 92616351 92617300 -89797942 - Harlequin LTR ERV1 -5176 1720 704 3961 97 14 24 chr6 92617594 92618214 -89797028 - Harlequin LTR ERV1 -7919 707 94 22 56 0 0 chr6 92618815 92618851 -89796391 + AT_rich Low_complexity Low_complexity 1 36 0 245 179 103 39 chr6 92619045 92619123 -89796119 - MLT1H LTR MaLR -25 524 442 852 183 0 0 chr6 92619198 92619351 -89795891 - MER58B DNA MER1_type 0 341 189 257 323 31 77 chr6 92619420 92619615 -89795627 + MER5A DNA MER1_type 2 187 -2 * 862 271 6 0 chr6 92619451 92619628 -89795614 - MER5A DNA MER1_type -8 181 4 450 245 72 58 chr6 92619628 92619836 -89795406 - MLT1H LTR MaLR -210 339 129 465 304 6 25 chr6 92621674 92621832 -89793410 + L2 LINE L2 3158 3312 -1 1997 137 20 0 chr6 92621934 92622284 -89792958 - L1MB3 LINE L1 -41 6142 5786 1805 163 21 12 chr6 92622284 92622616 -89792626 + MER2 DNA MER2_type 1 335 -10 2551 185 15 20 chr6 92622616 92623287 -89791955 - L1MB3 LINE L1 -400 5783 5116 356 311 89 22 chr6 92623301 92623481 -89791761 + MIR SINE MIR 5 196 -66 1100 215 0 0 chr6 92623609 92623814 -89791428 + AluJb SINE Alu 96 300 -12 192 200 0 0 chr6 92624307 92624347 -89790895 + CT-rich Low_complexity Low_complexity 5 44 0 459 329 63 0 chr6 92624420 92624578 -89790664 + MIR SINE MIR 35 202 -60 942 186 33 38 chr6 92625352 92625562 -89789680 - MER3 DNA MER1_type 0 209 1 607 90 45 0 chr6 92625721 92625810 -89789432 + MSTC LTR MaLR 1 93 -335 3124 69 2 7 chr6 92625817 92626236 -89789006 + L1PA8 LINE L1 5750 6166 -6 1711 166 28 25 chr6 92626340 92626666 -89788576 + MSTC LTR MaLR 102 428 0 289 385 90 6 chr6 92626682 92626838 -89788404 + L2 LINE L2 3104 3272 0 180 182 0 0 chr6 92627959 92628003 -89787239 + A-rich Low_complexity Low_complexity 1 44 0 2445 80 0 0 chr6 92628917 92629218 -89786024 - AluSq SINE Alu -10 303 3 408 40 0 0 chr6 92629709 92629759 -89785483 + (TA)n Simple_repeat Simple_repeat 2 51 0 218 366 0 0 chr6 92629807 92629889 -89785353 + L2 LINE L2 3228 3309 -4 294 29 0 0 chr6 92630078 92630113 -89785129 + (CTA)n Simple_repeat Simple_repeat 1 35 0 4363 166 34 21 chr6 92630163 92631227 -89784015 + L1MB8 LINE L1 5101 6173 -5 214 373 25 8 chr6 92631837 92631955 -89783287 - MIR3 SINE MIR -2 206 87 27 81 0 0 chr6 92633365 92633427 -89781815 + AT_rich Low_complexity Low_complexity 1 62 0 22 0 0 0 chr6 92633831 92633853 -89781389 + AT_rich Low_complexity Low_complexity 1 22 0 345 356 73 26 chr6 92639174 92639365 -89775877 + MIR3 SINE MIR 6 205 -3 23 0 0 0 chr6 92641093 92641116 -89774126 + AT_rich Low_complexity Low_complexity 1 23 0 237 258 180 0 chr6 92641590 92641679 -89773563 + LTR67 LTR ERVL 401 505 -52 391 326 114 52 chr6 92643407 92643812 -89771430 - L3b LINE CR1 -25 1558 1129 183 293 170 0 chr6 92644732 92644838 -89770404 - MIR SINE MIR -2 260 137 183 135 0 81 chr6 92644880 92644917 -89770325 - MIR SINE MIR -222 40 7 180 179 0 0 chr6 92645146 92645185 -89770057 + GA-rich Low_complexity Low_complexity 1 39 0 28 29 0 0 chr6 92645275 92645310 -89769932 + AT_rich Low_complexity Low_complexity 1 35 0 195 101 71 30 chr6 92645330 92645429 -89769813 + (TTATA)n Simple_repeat Simple_repeat 4 106 0 360 172 65 18 chr6 92645439 92645608 -89769634 + (TA)n Simple_repeat Simple_repeat 1 177 0 455 98 0 0 chr6 92645634 92645695 -89769547 + U6 snRNA snRNA 2 62 -45 23 0 0 0 chr6 92645737 92645760 -89769482 + AT_rich Low_complexity Low_complexity 1 23 0 441 243 58 26 chr6 92647656 92647845 -89767397 + L1ME4a LINE L1 5607 5801 -320 21 71 0 0 chr6 92647862 92647904 -89767338 + AT_rich Low_complexity Low_complexity 1 42 0 298 241 51 0 chr6 92647966 92648045 -89767197 + L1ME4a LINE L1 5991 6073 -48 195 42 0 0 chr6 92648397 92648421 -89766821 + (T)n Simple_repeat Simple_repeat 1 24 0 244 202 0 75 chr6 92648655 92648749 -89766493 - MER112 DNA MER1_type -31 229 143 2453 77 0 3 chr6 92648924 92649222 -89766020 + AluSc SINE Alu 1 297 -12 215 322 94 60 chr6 92652692 92652841 -89762401 + L2 LINE L2 3030 3183 -89 2243 124 0 3 chr6 92652843 92653149 -89762093 - AluSx SINE Alu -7 305 1 1854 176 28 8 chr6 92653562 92653921 -89761321 + MLT2D LTR ERVL 1 366 -48 180 111 0 0 chr6 92653932 92653959 -89761283 + (TC)n Simple_repeat Simple_repeat 2 28 0 195 100 0 0 chr6 92653959 92653989 -89761253 + (CA)n Simple_repeat Simple_repeat 2 31 0 26 74 0 0 chr6 92656652 92656706 -89758536 + AT_rich Low_complexity Low_complexity 1 54 0 26 0 0 0 chr6 92656743 92656769 -89758473 + AT_rich Low_complexity Low_complexity 1 26 0 2303 106 0 6 chr6 92657046 92657357 -89757885 + AluSg SINE Alu 1 309 -1 216 189 0 19 chr6 92662915 92662968 -89752274 + (CCG)n Simple_repeat Simple_repeat 2 53 0 27 0 0 0 chr6 92663102 92663129 -89752113 + GC_rich Low_complexity Low_complexity 1 27 0 2081 57 0 39 chr6 92664578 92664859 -89750383 + AluSc SINE Alu 1 270 -39 189 74 0 0 chr6 92664859 92664886 -89750356 + (TCTCTG)n Simple_repeat Simple_repeat 3 29 0 198 167 0 0 chr6 92664887 92664923 -89750319 + (TA)n Simple_repeat Simple_repeat 2 37 0 231 114 0 0 chr6 92671490 92671525 -89743717 + (T)n Simple_repeat Simple_repeat 1 35 0 324 0 0 0 chr6 92672028 92672064 -89743178 + (TG)n Simple_repeat Simple_repeat 2 37 0 303 314 170 39 chr6 92673138 92673421 -89741821 + L1M2 LINE L1 781 1100 -5749 302 67 22 0 chr6 92675493 92675538 -89739704 + (ATG)n Simple_repeat Simple_repeat 2 47 0 181 250 162 15 chr6 92675701 92675769 -89739473 + MIR SINE MIR 28 105 -157 210 37 0 0 chr6 92675771 92675798 -89739444 + (TC)n Simple_repeat Simple_repeat 2 28 0 181 267 93 23 chr6 92676781 92676867 -89738375 + L2 LINE L2 3173 3264 -49 272 305 144 30 chr6 92676929 92677096 -89738146 + MIR3 SINE MIR 16 201 -7 253 344 94 0 chr6 92677215 92677343 -89737899 + L2 LINE L2 3173 3312 -1 1745 168 31 20 chr6 92677391 92677683 -89737559 + AluJo SINE Alu 1 295 -17 569 274 72 67 chr6 92679046 92679477 -89735765 - MLT1J2 LTR MaLR -14 436 4 409 288 14 67 chr6 92680875 92681084 -89734158 + MIR SINE MIR 44 240 -22 375 41 0 0 chr6 92681884 92681933 -89733309 + (TG)n Simple_repeat Simple_repeat 2 50 0 386 245 21 0 chr6 92682555 92682649 -89732593 - MER5C DNA MER1_type -200 124 29 198 125 31 0 chr6 92682649 92682681 -89732561 + MIR3 SINE MIR 157 189 -19 605 273 29 0 chr6 92682813 92682985 -89732257 + MLT1J LTR MaLR 7 183 -328 1137 246 27 0 chr6 92683063 92683356 -89731886 - LTR43 LTR ERV1 -124 478 178 593 191 133 52 chr6 92684697 92684870 -89730372 - MER5A DNA MER1_type -2 187 1 291 314 8 16 chr6 92685011 92685132 -89730110 + MIR SINE MIR 79 198 -64 25 0 0 0 chr6 92685755 92685780 -89729462 + AT_rich Low_complexity Low_complexity 1 25 0 2277 59 0 17 chr6 92685835 92686150 -89729092 - AluY SINE Alu 0 310 1 369 311 23 8 chr6 92686372 92686504 -89728738 - MIR SINE MIR -57 205 72 3002 96 28 2 chr6 92686647 92687117 -89728125 - L1PB1 LINE L1 -416 5735 5254 2964 102 2 9 chr6 92687124 92687563 -89727679 + L1PB1 LINE L1 5714 6149 -2 4458 173 20 19 chr6 92687580 92688531 -89726711 + L1MB8 LINE L1 5227 6177 -1 733 173 19 65 chr6 92688726 92688940 -89726302 - HAL1 LINE L1 -197 2310 2107 1656 256 85 54 chr6 92688965 92689914 -89725328 - HAL1 LINE L1 -545 1962 984 243 319 65 7 chr6 92690064 92690202 -89725040 - HAL1 LINE L1 -1510 997 852 508 180 50 10 chr6 92690680 92690780 -89724462 - MER5A DNA MER1_type -77 112 9 267 343 30 0 chr6 92691416 92691550 -89723692 + ERVL LTR ERVL 728 865 -4131 225 159 0 0 chr6 92691555 92691599 -89723643 + (TA)n Simple_repeat Simple_repeat 2 45 0 314 339 74 14 chr6 92691612 92691895 -89723347 + ERVL LTR ERVL 879 1178 -3818 668 368 52 15 chr6 92692090 92692688 -89722554 + ERVL LTR ERVL 1530 2149 -3615 393 337 97 26 chr6 92692729 92692950 -89722292 + ERVL LTR ERVL 2251 2512 -3252 414 0 0 0 chr6 92692950 92692996 -89722246 + (TG)n Simple_repeat Simple_repeat 2 47 0 393 337 97 26 chr6 92692996 92693154 -89722088 + ERVL LTR ERVL 2512 2657 -3107 2841 7 0 0 chr6 92693163 92693472 -89721770 - AluYa5 SINE Alu -2 309 1 285 312 50 7 chr6 92693472 92693603 -89721639 + LTR16B LTR ERVL 296 435 -29 255 261 30 67 chr6 92693688 92693822 -89721420 + ERVL LTR ERVL 4858 4986 -778 204 393 36 0 chr6 92694238 92694322 -89720920 + L2 LINE L2 3185 3271 -1 1859 114 52 46 chr6 92695261 92695586 -89719656 + THE1B LTR MaLR 1 327 -37 305 242 116 0 chr6 92695949 92696044 -89719198 - MIR SINE MIR -39 223 118 240 318 0 55 chr6 92696511 92696621 -89718621 - MIR SINE MIR -128 134 31 22 0 0 0 chr6 92697514 92697536 -89717706 + AT_rich Low_complexity Low_complexity 1 22 0 426 344 19 96 chr6 92697536 92697911 -89717331 - L2 LINE L2 0 3272 2927 186 43 0 0 chr6 92698046 92698069 -89717173 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2063 313 72 11 chr6 92698261 92699571 -89715671 - HERV16 LTR ERVL -2605 2391 934 238 249 129 62 chr6 92699588 92699829 -89715413 - LTR41 LTR ERVL -7 766 510 504 335 54 10 chr6 92700183 92700479 -89714763 - HERV16 LTR ERVL -4404 592 284 1866 182 0 0 chr6 92700758 92701060 -89714182 - AluJb SINE Alu -10 302 1 388 324 29 14 chr6 92701156 92701295 -89713947 + MIR SINE MIR 112 252 -10 231 313 0 0 chr6 92701510 92701574 -89713668 - L2 LINE L2 -64 3249 3186 849 287 26 11 chr6 92701847 92702115 -89713127 + LTR33 LTR ERVL 1 272 -249 444 212 9 0 chr6 92702171 92702284 -89712958 + LTR33 LTR ERVL 394 507 -14 516 252 0 0 chr6 92702334 92702445 -89712797 + MIR SINE MIR 152 262 0 282 29 0 0 chr6 92703260 92703295 -89711947 + (TG)n Simple_repeat Simple_repeat 2 36 0 1477 247 51 13 chr6 92703378 92703828 -89711414 - MLT1C LTR MaLR 0 467 1 396 97 0 0 chr6 92704921 92704983 -89710259 + (TG)n Simple_repeat Simple_repeat 1 62 0 856 130 0 0 chr6 92705755 92705886 -89709356 - L1PA8 LINE L1 -9 6163 6033 230 316 174 10 chr6 92706638 92706736 -89708506 - MIR SINE MIR -79 129 16 21 89 0 0 chr6 92707050 92707106 -89708136 + AT_rich Low_complexity Low_complexity 1 56 0 374 309 66 7 chr6 92710705 92710857 -89704385 + MIR SINE MIR 31 191 -71 409 141 0 0 chr6 92711311 92711382 -89703860 - MER57A LTR ERV1 0 403 333 * 686 151 52 87 chr6 92711365 92711537 -89703705 - MER57A LTR ERV1 -237 166 1 204 306 28 0 chr6 92711579 92711651 -89703591 - MIR SINE MIR -102 160 87 773 295 72 28 chr6 92711933 92712323 -89702919 + MLT1J2 LTR MaLR 41 447 -3 1178 87 40 0 chr6 92713196 92713369 -89701873 + THE1C LTR MaLR 196 375 0 24 0 0 0 chr6 92713838 92713862 -89701380 + AT_rich Low_complexity Low_complexity 1 24 0 351 326 126 6 chr6 92713995 92714170 -89701072 - MIR SINE MIR -3 259 64 304 233 0 0 chr6 92714880 92714940 -89700302 - MIR SINE MIR -115 147 88 217 279 15 0 chr6 92716173 92716241 -89699001 + MIR3 SINE MIR 135 203 -5 24375 96 9 6 chr6 92716524 92721930 -89693312 - L1PA7 LINE L1 -11 6143 726 3092 84 18 11 chr6 92722241 92722680 -89692562 + MLT2A1 LTR ERVL 3 444 0 25 31 0 0 chr6 92723006 92723038 -89692204 + AT_rich Low_complexity Low_complexity 1 32 0 189 373 0 0 chr6 92723620 92723679 -89691563 - L2 LINE L2 -10 3262 3204 21 0 0 0 chr6 92724115 92724136 -89691106 + AT_rich Low_complexity Low_complexity 1 21 0 2742 109 5 2 chr6 92724785 92725189 -89690053 - L1PA13 LINE L1 -6 6157 5753 43472 44 2 0 chr6 92725350 92731483 -89683759 - L1PA4 LINE L1 -1 6154 13 253 289 56 72 chr6 92731622 92731802 -89683440 + L1ME LINE L1 5562 5738 -383 757 300 24 12 chr6 92731854 92732107 -89683135 + L2 LINE L2 2566 2821 -493 342 291 13 19 chr6 92732160 92732176 -89683066 - L1MA10 LINE L1 -2 6332 6317 1629 208 11 32 chr6 92732176 92732551 -89682691 - L1ME2 LINE L1 -9 6155 5789 1045 295 83 23 chr6 92732575 92733009 -89682233 + L2 LINE L2 2840 3299 -14 31 0 0 0 chr6 92733021 92733052 -89682190 + AT_rich Low_complexity Low_complexity 1 31 0 24 91 0 0 chr6 92733250 92733316 -89681926 + AT_rich Low_complexity Low_complexity 1 66 0 975 235 14 9 chr6 92733502 92733723 -89681519 - MER58A DNA MER1_type -1 223 2 1918 130 76 20 chr6 92733741 92734096 -89681146 + THE1C LTR MaLR 1 375 0 595 338 5 14 chr6 92734136 92734346 -89680896 + MIR SINE MIR 34 241 -21 210 71 0 0 chr6 92734381 92734409 -89680833 + (CCCTG)n Simple_repeat Simple_repeat 1 28 0 415 309 92 46 chr6 92734415 92734784 -89680458 + LTR33 LTR ERVL 71 456 -65 644 306 0 41 chr6 92735915 92736157 -89679085 - MIR SINE MIR 0 262 31 434 50 67 0 chr6 92736186 92736246 -89678996 + MADE1 DNA Mariner 4 67 -13 27111 100 5 6 chr6 92736253 92738627 -89676615 - L1PA7 LINE L1 0 6154 3778 2252 92 7 16 chr6 92738627 92738933 -89676309 - AluY SINE Alu -8 303 1 27111 100 5 6 chr6 92738933 92741406 -89673836 - L1PA7 LINE L1 -2376 3778 1314 700 276 65 24 chr6 92742571 92742817 -89672425 - MIR SINE MIR 0 262 7 1434 279 77 28 chr6 92743484 92744118 -89671124 - L2 LINE L2 -4 3309 2644 1895 232 102 18 chr6 92744118 92744665 -89670577 - MLT1E LTR MaLR 0 593 1 1434 279 77 28 chr6 92744665 92744690 -89670552 - L2 LINE L2 -669 2644 2622 2327 87 0 13 chr6 92745616 92745915 -89669327 + AluSx SINE Alu 1 295 -17 348 256 128 0 chr6 92747255 92747372 -89667870 + MIR SINE MIR 110 241 -21 27 49 0 0 chr6 92748677 92748718 -89666524 + AT_rich Low_complexity Low_complexity 1 41 0 27 49 0 0 chr6 92749147 92749188 -89666054 + AT_rich Low_complexity Low_complexity 1 41 0 411 324 32 16 chr6 92749275 92749460 -89665782 - L3b LINE CR1 -122 1461 1274 2376 55 27 0 chr6 92750320 92750613 -89664629 + AluY SINE Alu 1 301 -10 388 259 36 104 chr6 92750764 92750957 -89664285 - MIR SINE MIR -50 212 33 2337 178 35 63 chr6 92750963 92751628 -89663614 + MLT1E3 LTR MaLR 1 622 -2 227 339 81 0 chr6 92751772 92751896 -89663346 + MLT1I LTR MaLR 26 159 -250 2937 132 54 6 chr6 92754529 92754904 -89660338 + L1MA9 LINE L1 5762 6170 -142 201 74 0 0 chr6 92754904 92754931 -89660311 + (CA)n Simple_repeat Simple_repeat 2 28 0 2937 132 54 6 chr6 92754931 92755077 -89660165 + L1MA9 LINE L1 6170 6308 -4 659 283 94 54 chr6 92756633 92757025 -89658217 - MLT1J2 LTR MaLR -13 437 30 244 268 132 23 chr6 92757046 92757205 -89658037 + MIR SINE MIR 34 218 -44 2236 180 7 22 chr6 92757403 92757859 -89657383 + L1MA8 LINE L1 4866 5314 -832 1249 73 0 0 chr6 92757860 92758011 -89657231 - AluY SINE Alu -12 299 149 4971 136 32 64 chr6 92758013 92759025 -89656217 + L1MA8 LINE L1 5303 6281 -10 975 196 13 44 chr6 92761039 92761264 -89653978 - MER20 DNA MER1_type 0 219 2 244 363 0 67 chr6 92761631 92761766 -89653476 - MIR SINE MIR -55 207 82 1761 52 0 4 chr6 92763403 92763634 -89651608 - L1PA4 LINE L1 -1 6154 5925 3734 69 1 22 chr6 92763634 92764591 -89650651 + L1PA4 LINE L1 5050 5947 -207 515 304 169 31 chr6 92764620 92765100 -89650142 - L1M4 LINE L1 -1224 4922 4377 402 282 122 27 chr6 92765135 92765507 -89649735 - L1M4 LINE L1 -1827 4319 3908 273 29 0 0 chr6 92766537 92766571 -89648671 + (CA)n Simple_repeat Simple_repeat 2 35 0 288 304 40 16 chr6 92766813 92766938 -89648304 + MIR SINE MIR 132 259 -3 413 282 101 44 chr6 92767333 92767768 -89647474 - MLT1J LTR MaLR -10 501 1 250 275 33 22 chr6 92767768 92767859 -89647383 - MIR SINE MIR -62 200 109 619 336 33 0 chr6 92768273 92768493 -89646749 + MIR SINE MIR 8 232 -30 2932 221 19 29 chr6 92768571 92769294 -89645948 - L1ME2 LINE L1 -9 6155 5440 769 289 38 11 chr6 92769480 92769746 -89645496 - HAL1 LINE L1 -2199 308 36 703 249 68 48 chr6 92769842 92770091 -89645151 + MIR SINE MIR 8 261 -1 22 56 0 0 chr6 92770582 92770618 -89644624 + AT_rich Low_complexity Low_complexity 1 36 0 456 19 0 0 chr6 92772597 92772650 -89642592 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 507 307 90 16 chr6 92772730 92772941 -89642301 - MIR SINE MIR 0 262 38 273 322 44 11 chr6 92773132 92773222 -89642020 + MIR SINE MIR 2 94 -168 476 239 138 22 chr6 92773455 92773593 -89641649 - MER5A DNA MER1_type -35 154 1 306 0 0 0 chr6 92773892 92773926 -89641316 + (CA)n Simple_repeat Simple_repeat 2 35 0 291 198 148 50 chr6 92774743 92774844 -89640398 + MER69 DNA AcHobo 10 120 -1106 478 191 163 14 chr6 92774846 92774987 -89640255 + MER69 DNA AcHobo 2358 2519 -7 2349 140 5 15 chr6 92775062 92775456 -89639786 - MLT1B LTR MaLR 0 390 1 428 133 148 0 chr6 92775457 92775569 -89639673 - MLT1B-int LTR MaLR 0 1735 1237 216 0 0 0 chr6 92776241 92776265 -89638977 + (TG)n Simple_repeat Simple_repeat 1 24 0 239 0 0 31 chr6 92776418 92776450 -89638792 + (CA)n Simple_repeat Simple_repeat 1 31 0 283 337 0 0 chr6 92776618 92776704 -89638538 - L2 LINE L2 -1 3271 3186 7017 52 4 4 chr6 92778141 92779146 -89636096 - L1PA6 LINE L1 0 6154 5145 793 298 105 7 chr6 92779168 92779453 -89635789 + Charlie2 DNA MER1_type 7 319 -2463 1530 264 102 18 chr6 92779475 92780054 -89635188 + Charlie2 DNA MER1_type 1865 2509 -353 2671 17 0 0 chr6 92780054 92780354 -89634888 + AluY SINE Alu 1 300 -11 1530 264 102 18 chr6 92780354 92780440 -89634802 + Charlie2 DNA MER1_type 2509 2586 -276 25 0 0 0 chr6 92780515 92780540 -89634702 + AT_rich Low_complexity Low_complexity 1 25 0 597 231 148 18 chr6 92780619 92780848 -89634394 + Charlie2 DNA MER1_type 2601 2859 -3 223 317 49 41 chr6 92783666 92783789 -89631453 - L2 LINE L2 -6 3307 3184 21 0 0 0 chr6 92784061 92784082 -89631160 + AT_rich Low_complexity Low_complexity 1 21 0 544 320 68 8 chr6 92784281 92784646 -89630596 + L1ME4a LINE L1 5378 5764 -357 275 238 30 69 chr6 92784762 92784863 -89630379 + L1ME4a LINE L1 5956 6052 -69 22 56 0 0 chr6 92785241 92785277 -89629965 + AT_rich Low_complexity Low_complexity 1 36 0 288 331 74 46 chr6 92786608 92786783 -89628459 + MIR3 SINE MIR 17 196 -12 34 0 0 0 chr6 92787021 92787055 -89628187 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr6 92787685 92787714 -89627528 + AT_rich Low_complexity Low_complexity 1 29 0 2288 37 0 0 chr6 92789668 92789941 -89625301 + L1PA3 LINE L1 5880 6152 -3 219 208 39 26 chr6 92793758 92793835 -89621407 + GA-rich Low_complexity Low_complexity 3 80 0 552 343 96 0 chr6 92794362 92794581 -89620661 - MIR SINE MIR -9 253 14 507 171 70 8 chr6 92795804 92795933 -89619309 + L1ME4a LINE L1 5982 6118 -3 205 326 149 14 chr6 92796014 92796155 -89619087 + L3 LINE CR1 304 463 -1114 217 286 68 54 chr6 92796414 92796561 -89618681 - MIR SINE MIR -15 247 99 235 297 14 27 chr6 92797063 92797137 -89618105 + L3b LINE CR1 1358 1430 -153 458 265 121 0 chr6 92797784 92797821 -89617421 - L1MA10 LINE L1 -2 6332 6296 6636 229 77 25 chr6 92797821 92798498 -89616744 - L1ME1 LINE L1 -46 6189 5548 2122 67 4 0 chr6 92798498 92798768 -89616474 + AluY SINE Alu 25 295 -16 6636 229 77 25 chr6 92798768 92801042 -89614200 - L1ME1 LINE L1 -687 5548 3104 2861 261 45 12 chr6 92801032 92801837 -89613405 - L1ME1 LINE L1 -5528 868 38 * 567 277 39 7 chr6 92801992 92802147 -89613095 + MLT1I LTR MaLR 93 252 -157 2742 92 22 96 chr6 92802147 92802636 -89612606 - MLT2A2 LTR ERVL 0 453 1 301 319 26 26 chr6 92802873 92802989 -89612253 - L2 LINE L2 -10 3303 3188 1963 136 11 111 chr6 92803607 92803932 -89611310 - MLT1B LTR MaLR 0 390 34 221 0 0 33 chr6 92803932 92803962 -89611280 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1744 159 7 27 chr6 92803964 92804259 -89610983 - AluSx SINE Alu -23 289 1 1963 136 11 111 chr6 92804259 92804363 -89610879 - MLT1B LTR MaLR -357 33 1 345 302 94 19 chr6 92804593 92804752 -89610490 - MER5B DNA MER1_type -5 173 3 214 337 172 33 chr6 92804795 92805610 -89609632 - L2 LINE L2 -633 2681 1754 492 307 62 19 chr6 92806163 92806420 -89608822 - L2 LINE L2 -447 2867 2600 197 210 226 0 chr6 92806571 92806633 -89608609 - L2 LINE L2 -15 3298 3223 22 70 0 0 chr6 92807698 92807741 -89607501 + AT_rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr6 92807741 92807767 -89607475 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1097 241 22 12 chr6 92807862 92808181 -89607061 + L1ME2 LINE L1 5842 6163 -1 21 0 0 0 chr6 92810176 92810197 -89605045 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr6 92811254 92811297 -89603945 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr6 92811583 92811624 -89603618 + AT_rich Low_complexity Low_complexity 1 41 0 288 303 0 20 chr6 92811638 92811737 -89603505 + (TATATG)n Simple_repeat Simple_repeat 1 97 0 180 0 0 0 chr6 92811832 92811852 -89603390 + (TG)n Simple_repeat Simple_repeat 2 21 0 1988 113 68 37 chr6 92812322 92812675 -89602567 - THE1B LTR MaLR 0 364 1 1079 266 92 32 chr6 92813054 92813423 -89601819 + L2 LINE L2 2916 3306 -7 1038 249 59 105 chr6 92814012 92814538 -89600704 + L2 LINE L2 2808 3309 -4 443 326 65 82 chr6 92814714 92815054 -89600188 - L2 LINE L2 -5 3267 2934 183 80 0 0 chr6 92815128 92815153 -89600089 + (TAA)n Simple_repeat Simple_repeat 2 26 0 628 253 19 19 chr6 92815164 92815326 -89599916 - MIR SINE MIR -20 242 81 1356 179 0 5 chr6 92816653 92816876 -89598366 + MER58A DNA MER1_type 3 224 0 189 340 57 38 chr6 92817041 92817147 -89598095 - L2 LINE L2 -56 3257 3150 516 340 130 32 chr6 92817309 92817985 -89597257 - L2 LINE L2 -352 2962 2221 1797 119 28 7 chr6 92817989 92818274 -89596968 - MER47A DNA MER2_type -75 291 1 242 270 157 0 chr6 92818346 92818435 -89596807 - MIR SINE MIR -70 192 90 386 312 165 14 chr6 92818502 92818720 -89596522 - MIR SINE MIR 0 262 12 22 0 0 0 chr6 92818891 92818913 -89596329 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr6 92819382 92819418 -89595824 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr6 92819809 92819832 -89595410 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr6 92819897 92819926 -89595316 + AT_rich Low_complexity Low_complexity 1 29 0 354 294 85 5 chr6 92820128 92820339 -89594903 - L1MC/D LINE L1 -473 5648 5412 220 292 67 34 chr6 92820568 92820657 -89594585 + MER5A DNA MER1_type 43 134 -55 340 264 101 38 chr6 92821239 92821398 -89593844 - MIR SINE MIR -10 252 84 930 211 0 56 chr6 92822637 92822850 -89592392 + AluJb SINE Alu 100 300 -12 1721 175 34 0 chr6 92823337 92823629 -89591613 - AluJb SINE Alu -10 302 1 271 333 105 9 chr6 92823932 92824046 -89591196 - MIR3 SINE MIR -30 178 54 237 33 0 0 chr6 92824581 92824611 -89590631 + (TG)n Simple_repeat Simple_repeat 2 31 0 197 307 90 38 chr6 92826961 92827173 -89588069 + L2 LINE L2 2347 2569 -745 275 182 50 0 chr6 92827600 92827699 -89587543 + (TA)n Simple_repeat Simple_repeat 1 104 0 375 89 89 6 chr6 92827744 92827902 -89587340 + (TA)n Simple_repeat Simple_repeat 1 171 0 738 249 81 5 chr6 92828193 92828390 -89586852 - MIR SINE MIR -15 247 36 1219 204 40 82 chr6 92828396 92828797 -89586445 - MLT1B LTR MaLR -6 384 1 21 36 0 0 chr6 92830067 92830095 -89585147 + AT_rich Low_complexity Low_complexity 1 28 0 1926 177 3 0 chr6 92830239 92830544 -89584698 - AluJb SINE Alu -4 308 3 218 354 21 49 chr6 92830629 92830773 -89584469 - L3b LINE CR1 -154 1429 1290 555 237 23 74 chr6 92831132 92831314 -89583928 - MIR SINE MIR -15 193 14 189 279 123 41 chr6 92831584 92831706 -89583536 - L3 LINE CR1 -801 776 645 25 0 0 0 chr6 92831932 92831957 -89583285 + AT_rich Low_complexity Low_complexity 1 25 0 786 171 0 0 chr6 92832554 92832671 -89582571 + FLAM_C SINE Alu 2 118 -15 396 88 0 0 chr6 92832678 92832735 -89582507 + (TG)n Simple_repeat Simple_repeat 2 58 0 200 277 0 0 chr6 92832738 92832785 -89582457 + (TATG)n Simple_repeat Simple_repeat 4 50 0 4993 163 5 2 chr6 92833237 92834841 -89580401 + L1MA5A LINE L1 4506 6113 -184 32716 101 15 25 chr6 92834853 92841053 -89574189 + L1PA6 LINE L1 11 6146 -8 2476 132 25 20 chr6 92841053 92841493 -89573749 + Tigger1 DNA MER2_type 1797 2238 -180 1057 116 26 0 chr6 92841516 92841705 -89573537 + L1MA5A LINE L1 6104 6297 0 428 153 73 40 chr6 92842591 92842741 -89572501 - HsTC2 DNA Tc2 -34 1864 1710 797 236 44 13 chr6 92842747 92842972 -89572270 - HsTC2 DNA Tc2 -1584 314 83 3739 31 0 0 chr6 92843138 92843591 -89571651 + HERV17 LTR ERV1 5567 6019 -2607 285 51 0 0 chr6 92843584 92843623 -89571619 + HERV17 LTR ERV1 7510 7548 -1078 * 2207 75 0 0 chr6 92843613 92843905 -89571337 + HERV17 LTR ERV1 8335 8626 0 2620 43 0 0 chr6 92843905 92844231 -89571011 + LTR17 LTR ERV1 1 326 -454 195 125 0 0 chr6 92844231 92844271 -89570971 + (A)n Simple_repeat Simple_repeat 1 40 0 343 199 140 15 chr6 92845276 92845412 -89569830 - HsTC2 DNA Tc2 -36 1862 1710 569 219 40 13 chr6 92845418 92845569 -89569673 - HsTC2 DNA Tc2 -1584 314 160 11584 217 13 7 chr6 92845618 92848807 -89566435 - L1 LINE L1 -1291 4855 1655 900 80 0 16 chr6 92848888 92849013 -89566229 - L1PA8 LINE L1 -8 6164 6042 718 105 26 0 chr6 92849014 92849128 -89566114 + L1PA8 LINE L1 5913 6029 -143 2387 101 0 0 chr6 92849315 92849623 -89565619 + AluY SINE Alu 2 309 -2 524 200 42 8 chr6 92850324 92850444 -89564798 - MLT1J2 LTR MaLR -307 143 20 349 314 76 15 chr6 92850469 92850858 -89564384 + L1ME LINE L1 5394 5822 -340 29 28 0 0 chr6 92850900 92850936 -89564306 + AT_rich Low_complexity Low_complexity 1 36 0 1476 217 131 0 chr6 92851023 92851373 -89563869 - MSTD LTR MaLR 0 396 1 1988 137 0 44 chr6 92851608 92851929 -89563313 - AluSx SINE Alu 0 312 6 332 205 39 39 chr6 92852029 92852107 -89563135 - MIR3 SINE MIR -22 186 109 2717 104 3 3 chr6 92854483 92854847 -89560395 + THE1B LTR MaLR 1 364 0 9047 99 40 77 chr6 92854847 92855224 -89560018 + THE1B-int LTR MaLR 1 391 -1189 8222 30 0 0 chr6 92855224 92856974 -89558268 - L1PA4 LINE L1 0 6155 4407 9047 99 40 77 chr6 92856974 92858238 -89557004 + THE1B-int LTR MaLR 391 1580 0 2629 113 6 0 chr6 92858238 92858600 -89556642 + THE1B LTR MaLR 1 364 0 343 194 108 21 chr6 92859560 92859653 -89555589 + MIR SINE MIR 91 191 -71 252 200 31 0 chr6 92859691 92859756 -89555486 - Charlie1 DNA MER1_type 0 2761 2695 995 183 12 33 chr6 92859758 92859999 -89555243 - Charlie1 DNA MER1_type -262 2499 2264 304 136 15 15 chr6 92859999 92860065 -89555177 + T-rich Low_complexity Low_complexity 3 68 0 1921 139 6 64 chr6 92860077 92860270 -89554972 - AluSx SINE Alu 0 312 144 2163 117 3 3 chr6 92860270 92860570 -89554672 - AluSc SINE Alu -9 300 1 1921 139 6 64 chr6 92860570 92860706 -89554536 - AluSx SINE Alu -168 144 2 3087 201 31 18 chr6 92860712 92861454 -89553788 - Charlie1 DNA MER1_type -491 2270 1519 558 260 7 0 chr6 92861526 92861690 -89553552 + L1MA10 LINE L1 6010 6333 -1 1241 217 139 39 chr6 92861776 92862259 -89552983 - LTR10B LTR ERV1 -2 545 15 5598 238 8 9 chr6 92862287 92863661 -89551581 - HERVI LTR ERV1 -2 7783 6412 1565 218 141 18 chr6 92864016 92864462 -89550780 - HERVI LTR ERV1 -3737 3159 2659 529 225 26 33 chr6 92864530 92864681 -89550561 - HERVI LTR ERV1 -2858 4927 4778 1618 241 45 12 chr6 92864703 92865106 -89550136 - HERVI LTR ERV1 -3146 4639 4224 607 247 47 0 chr6 92865107 92865277 -89549965 - HERVI LTR ERV1 -3482 3167 2990 2867 231 36 71 chr6 92865977 92866990 -89548252 - HERVI LTR ERV1 -6782 1003 26 1009 225 190 43 chr6 92867033 92867496 -89547746 - LTR10B LTR ERV1 -2 545 15 2242 114 0 3 chr6 92868369 92868666 -89546576 + AluSg SINE Alu 1 296 -14 367 274 250 14 chr6 92868763 92868971 -89546271 + L2 LINE L2 2081 2337 -977 1554 246 83 33 chr6 92868985 92869549 -89545693 - MLT1G LTR MaLR -18 572 1 1342 325 97 21 chr6 92869553 92870201 -89545041 + L2 LINE L2 2337 3036 -277 221 267 112 30 chr6 92870594 92870694 -89544548 - MIR SINE MIR -62 146 55 200 290 0 16 chr6 92870862 92870924 -89544318 + L3 LINE CR1 1516 1576 -1 1785 146 0 55 chr6 92871230 92871538 -89543704 - AluJo SINE Alu -21 291 1 1326 245 68 54 chr6 92871726 92872244 -89542998 + MLT1H LTR MaLR 11 535 -14 421 130 26 0 chr6 92872286 92872363 -89542879 - MSTD LTR MaLR -2 394 316 23 0 0 0 chr6 92873024 92873047 -89542195 + AT_rich Low_complexity Low_complexity 1 23 0 1047 215 135 25 chr6 92873611 92873936 -89541306 - MLT1A1 LTR MaLR 0 365 5 342 0 0 0 chr6 92873945 92873983 -89541259 + (T)n Simple_repeat Simple_repeat 1 38 0 327 316 110 7 chr6 92876694 92876830 -89538412 - MIR SINE MIR -81 181 32 181 348 33 22 chr6 92877717 92877809 -89537433 - MIR SINE MIR -96 112 20 334 250 156 67 chr6 92879039 92879219 -89536023 - L2 LINE L2 0 3313 3118 438 266 92 23 chr6 92879247 92879420 -89535822 + MIR SINE MIR 78 262 0 249 377 52 7 chr6 92879456 92879610 -89535632 - L2 LINE L2 -214 3058 2898 316 361 99 25 chr6 92879853 92880255 -89534987 - L2 LINE L2 0 3272 2841 6663 73 4 3 chr6 92880386 92884938 -89530304 + L1PA6 LINE L1 1414 6141 -13 17519 186 17 34 chr6 92886080 92888330 -89526912 + L1PA11 LINE L1 902 3188 -4396 336 24 0 0 chr6 92888330 92888371 -89526871 + (TC)n Simple_repeat Simple_repeat 2 42 0 17519 186 17 34 chr6 92888371 92889214 -89526028 + L1PA11 LINE L1 3188 4044 -3540 2188 104 0 0 chr6 92889214 92889492 -89525750 + AluSg SINE Alu 1 278 -32 203 0 0 36 chr6 92889492 92889520 -89525722 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 17519 186 17 34 chr6 92889520 92889616 -89525626 + L1PA11 LINE L1 4043 4139 -3445 1758 136 4 18 chr6 92889616 92889895 -89525347 + AluSx SINE Alu 33 307 -5 17519 186 17 34 chr6 92889895 92891161 -89524081 + L1PA11 LINE L1 4139 6046 -1538 6154 88 11 41 chr6 92891165 92892569 -89522673 + L1PA11 LINE L1 6236 7611 -1 3364 5 0 0 chr6 92892593 92892995 -89522247 + L1PA2 LINE L1 5767 6168 0 41 58 0 0 chr6 92892997 92893066 -89522176 + AT_rich Low_complexity Low_complexity 1 69 0 614 260 54 103 chr6 92893136 92893281 -89521961 - MIR SINE MIR -30 232 102 2330 83 10 3 chr6 92893281 92893581 -89521661 + AluSq SINE Alu 1 302 -11 614 260 54 103 chr6 92893581 92893677 -89521565 - MIR SINE MIR -160 102 3 231 107 0 54 chr6 92894129 92894185 -89521057 + (GAA)n Simple_repeat Simple_repeat 3 55 0 285 140 0 0 chr6 92894413 92894470 -89520772 + (TA)n Simple_repeat Simple_repeat 2 58 0 2219 121 16 0 chr6 92894768 92895075 -89520167 - AluSx SINE Alu 0 312 1 231 336 233 24 chr6 92895491 92896036 -89519206 - L2 LINE L2 -562 2752 2094 274 345 56 73 chr6 92896521 92896932 -89518310 - L2 LINE L2 -1428 1886 1483 282 222 0 28 chr6 92897096 92897168 -89518074 + MLT1K LTR MaLR 143 212 -376 294 349 41 12 chr6 92897274 92897443 -89517799 + MLT1K LTR MaLR 345 518 -70 396 269 13 27 chr6 92898198 92898310 -89516932 - MIR SINE MIR -80 128 4 1180 113 0 5 chr6 92898579 92898764 -89516478 + MER61A LTR ERV1 1 184 -159 892 298 72 48 chr6 92898888 92899304 -89515938 - MLT1J LTR MaLR -85 426 1 1029 283 56 6 chr6 92899549 92899906 -89515336 + LTR16B LTR ERVL 90 464 0 199 296 193 0 chr6 92900243 92900331 -89514911 - L2 LINE L2 -1 3312 3208 212 239 0 0 chr6 92902181 92902227 -89513015 + L2 LINE L2 3264 3309 -4 181 305 35 75 chr6 92902266 92902440 -89512802 + L2 LINE L2 1807 1973 -1341 248 216 0 20 chr6 92902573 92902624 -89512618 - L2 LINE L2 -6 3307 3258 211 236 14 28 chr6 92906006 92906078 -89509164 + GA-rich Low_complexity Low_complexity 5 75 0 2730 121 24 7 chr6 92907587 92908008 -89507234 + MSTA LTR MaLR 1 428 0 462 282 58 33 chr6 92908108 92908349 -89506893 + L1ME LINE L1 5545 5791 -330 1852 125 50 67 chr6 92908352 92908695 -89506547 - MER1B DNA MER1_type 0 337 1 534 281 146 14 chr6 92908757 92909127 -89506115 + MLT1L LTR MaLR 181 599 -16 24 91 0 0 chr6 92909240 92909306 -89505936 + AT_rich Low_complexity Low_complexity 1 66 0 840 284 66 42 chr6 92909518 92909853 -89505389 - MLT1I LTR MaLR -66 343 1 2376 120 13 13 chr6 92910737 92911112 -89504130 - THE1C LTR MaLR 0 375 1 255 79 0 0 chr6 92911130 92911168 -89504074 + (TC)n Simple_repeat Simple_repeat 2 39 0 305 159 16 0 chr6 92911169 92911232 -89504010 + (TA)n Simple_repeat Simple_repeat 1 64 0 291 289 23 46 chr6 92911347 92911520 -89503722 - MLT1K LTR MaLR -100 488 320 796 71 0 0 chr6 92911844 92911956 -89503286 - L1PA11 LINE L1 -393 5775 5664 2769 95 10 5 chr6 92911957 92912348 -89502894 + L1PA11 LINE L1 5777 6169 -5 193 345 179 12 chr6 92912504 92912672 -89502570 + MIR3 SINE MIR 10 205 -3 1275 38 0 0 chr6 92912928 92913120 -89502122 + L1PA4 LINE L1 5973 6164 0 225 0 0 0 chr6 92914854 92914879 -89500363 + (T)n Simple_repeat Simple_repeat 1 25 0 182 91 30 0 chr6 92916239 92916272 -89498970 + (TG)n Simple_repeat Simple_repeat 2 35 0 401 278 63 69 chr6 92916361 92916533 -89498709 + LTR16C LTR ERVL 149 320 -171 2416 214 42 11 chr6 92916533 92917083 -89498159 + MLT1F1 LTR MaLR 1 567 0 401 278 63 69 chr6 92917083 92917227 -89498015 + LTR16C LTR ERVL 320 463 -28 899 177 6 17 chr6 92918035 92918210 -89497032 - MLT1D LTR MaLR -332 173 1 243 103 0 0 chr6 92918827 92918866 -89496376 + (CA)n Simple_repeat Simple_repeat 1 39 0 2833 84 11 0 chr6 92919635 92920015 -89495227 + L1PA8A LINE L1 5730 6113 -18 349 243 309 13 chr6 92920311 92920463 -89494779 - MIR SINE MIR -46 216 20 25 0 0 0 chr6 92922162 92922187 -89493055 + AT_rich Low_complexity Low_complexity 1 25 0 471 177 0 0 chr6 92922435 92922531 -89492711 + A-rich Low_complexity Low_complexity 1 96 0 203 161 0 0 chr6 92922671 92922702 -89492540 + polypurine Low_complexity Low_complexity 2 32 0 2314 68 10 14 chr6 92923542 92923834 -89491408 + L1PB1 LINE L1 5858 6148 -3 338 249 15 32 chr6 92924078 92924172 -89491070 + MLT1J LTR MaLR 74 153 -256 4760 134 24 3 chr6 92924677 92925414 -89489828 + Tigger1 DNA MER2_type 1 753 -1665 1807 144 17 10 chr6 92925394 92925692 -89489550 + Tigger1 DNA MER2_type 2119 2418 0 * 225 189 0 0 chr6 92925940 92925977 -89489265 + MER91 DNA MER1_type 58 94 -102 249 33 0 0 chr6 92926315 92926345 -89488897 + (GA)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr6 92927093 92927116 -89488126 + AT_rich Low_complexity Low_complexity 1 23 0 306 336 134 28 chr6 92927478 92927865 -89487377 + L2 LINE L2 2845 3272 0 470 115 0 0 chr6 92928609 92928670 -89486572 + AluS SINE Alu 2 62 -248 204 300 164 0 chr6 92929637 92929747 -89485495 + L2 LINE L2 2910 3037 -235 403 208 256 19 chr6 92929879 92930056 -89485186 + MLT1H LTR MaLR 1 194 -355 290 237 79 27 chr6 92930128 92930303 -89484939 + MLT1H LTR MaLR 332 595 0 1370 266 103 63 chr6 92930348 92930920 -89484322 + MLT1G LTR MaLR 1 590 0 210 328 38 53 chr6 92930921 92931052 -89484190 + L2 LINE L2 3143 3271 -1 376 303 64 0 chr6 92932209 92932318 -89482924 - L2 LINE L2 -16 3256 3141 967 242 38 0 chr6 92932348 92932559 -89482683 + MER58A DNA MER1_type 1 219 -5 623 306 43 21 chr6 92933403 92933638 -89481604 + MIR SINE MIR 23 262 0 266 343 46 0 chr6 92933766 92933874 -89481368 + L2 LINE L2 3127 3239 -33 513 135 115 29 chr6 92933882 92933986 -89481256 - MSTB LTR MaLR 0 432 320 2710 41 0 3 chr6 92933986 92934303 -89480939 + AluYb8 SINE Alu 1 316 -2 1473 179 33 27 chr6 92936451 92936752 -89478490 - MSTB LTR MaLR -123 303 1 2313 104 0 0 chr6 92937199 92937498 -89477744 - AluSc SINE Alu -6 303 5 5360 140 89 103 chr6 92938155 92938265 -89476977 + L1MC3 LINE L1 6243 6353 -6 2197 131 35 35 chr6 92938265 92938640 -89476602 - THE1C LTR MaLR 0 375 1 5360 140 89 103 chr6 92938640 92939108 -89476134 + L1MC3 LINE L1 6353 5743 -616 249 235 59 24 chr6 92939108 92939193 -89476049 + MLT1B LTR MaLR 35 122 -445 5360 140 89 103 chr6 92939193 92939803 -89475439 + L1MC3 LINE L1 5742 6359 0 2027 196 22 8 chr6 92940533 92940891 -89474351 - MLT1A1 LTR MaLR -2 363 1 187 289 67 67 chr6 92943144 92943248 -89471994 - MIR SINE MIR -146 116 13 488 331 49 0 chr6 92944170 92944354 -89470888 + MIR SINE MIR 70 262 0 2019 112 13 3 chr6 92945263 92945567 -89469675 + AluSx SINE Alu 5 311 -1 188 216 0 0 chr6 92947268 92947305 -89467937 - L2 LINE L2 -8 3305 3269 285 301 65 24 chr6 92947382 92947505 -89467737 + MIR SINE MIR 31 158 -104 1190 149 5 34 chr6 92947505 92947713 -89467529 + MLT1B LTR MaLR 1 202 -188 1252 181 34 21 chr6 92947860 92947887 -89467355 + MLT1B LTR MaLR 151 176 -214 2390 94 0 0 chr6 92947887 92948184 -89467058 + AluSg SINE Alu 1 297 -13 1252 181 34 21 chr6 92948184 92948393 -89466849 + MLT1B LTR MaLR 176 390 0 271 148 16 16 chr6 92950443 92950504 -89464738 + GA-rich Low_complexity Low_complexity 4 64 0 191 291 29 39 chr6 92950696 92950799 -89464443 + MER5B DNA MER1_type 1 102 -76 2059 172 62 6 chr6 92951993 92952348 -89462894 + THE1C LTR MaLR 1 375 0 10517 141 29 7 chr6 92952350 92953894 -89461348 + THE1C-int LTR MaLR 3 1580 0 2088 145 96 6 chr6 92953894 92954074 -89461168 + THE1C LTR MaLR 1 163 -212 348 43 0 0 chr6 92954074 92954120 -89461122 + (TC)n Simple_repeat Simple_repeat 1 46 0 2088 145 96 6 chr6 92954120 92954283 -89460959 + THE1C LTR MaLR 163 375 0 1407 264 90 37 chr6 92954703 92955337 -89459905 + L2 LINE L2 2646 3313 0 193 36 0 36 chr6 92956722 92956750 -89458492 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 599 168 59 0 chr6 92956852 92956953 -89458289 + AluSp/q SINE Alu 191 297 -16 308 283 67 56 chr6 92957121 92957301 -89457941 - MIR3 SINE MIR -7 201 20 481 222 0 0 chr6 92957461 92957551 -89457691 - L2 LINE L2 0 3272 3183 642 285 43 16 chr6 92957986 92958172 -89457070 - MIR3 SINE MIR -12 196 6 1833 282 153 20 chr6 92958386 92959498 -89455744 + L2 LINE L2 2046 3311 -2 738 178 31 8 chr6 92959956 92960085 -89455157 + MLT1C LTR MaLR 336 467 0 1218 276 106 32 chr6 92960085 92960703 -89454539 + L2 LINE L2 2656 3312 -1 847 127 0 8 chr6 92962249 92962375 -89452867 - THE1B LTR MaLR 0 364 240 9726 79 2 12 chr6 92962379 92963204 -89452038 + L1PA7 LINE L1 4138 4970 -1184 2319 85 0 7 chr6 92963204 92963509 -89451733 - AluY SINE Alu -8 303 1 9726 79 2 12 chr6 92963509 92964711 -89450531 + L1PA7 LINE L1 4970 6152 -2 29 0 0 0 chr6 92964729 92964758 -89450484 + AT_rich Low_complexity Low_complexity 1 29 0 193 303 101 11 chr6 92965562 92965651 -89449591 - L3b LINE CR1 -38 1545 1449 3590 86 2 2 chr6 92965753 92966229 -89449013 - L1P LINE L1 -5662 484 9 12372 60 0 0 chr6 92966234 92967793 -89447449 + L1PA7 LINE L1 1335 2893 -3253 7393 63 3 13 chr6 92967894 92968303 -89446939 + L1PA7 LINE L1 4553 4965 -1189 2319 85 0 7 chr6 92968303 92968608 -89446634 - AluY SINE Alu -8 303 1 7393 63 3 13 chr6 92968608 92969812 -89445430 + L1PA7 LINE L1 4965 6154 0 6002 184 21 0 chr6 92970089 92971124 -89444118 + L1M1 LINE L1 1061 2117 -5448 17639 60 0 4 chr6 92971281 92973511 -89441731 + L1M1 LINE L1 2092 4312 -3253 3570 204 62 77 chr6 92975787 92977108 -89438134 - L1MC5 LINE L1 -36 7925 6625 1525 212 3 7 chr6 92977114 92977402 -89437840 - AluJb SINE Alu -25 287 1 970 191 81 9 chr6 92977450 92977660 -89437582 - AluJb SINE Alu -1 311 87 359 304 81 68 chr6 92977662 92977958 -89437284 - L1MC4a LINE L1 -1228 6580 6281 21 36 0 0 chr6 92978015 92978043 -89437199 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 92978153 92978177 -89437065 + AT_rich Low_complexity Low_complexity 1 24 0 245 188 54 134 chr6 92978189 92978301 -89436941 - L1MC4a LINE L1 -1908 5900 5798 1502 280 91 2 chr6 92978302 92978827 -89436415 - L1MC4a LINE L1 -1982 5826 5255 1397 212 70 100 chr6 92979134 92979237 -89436005 + L1MC4 LINE L1 7463 7568 -474 3380 141 16 22 chr6 92979237 92979464 -89435778 - L1MC1 LINE L1 -3 6330 6103 1953 163 120 28 chr6 92979464 92979856 -89435386 - MSTA LTR MaLR 0 428 1 3380 141 16 22 chr6 92979856 92980183 -89435059 - L1MC1 LINE L1 -230 6103 5779 1397 212 70 100 chr6 92980183 92980536 -89434706 + L1MC4 LINE L1 7568 7899 -143 282 29 0 0 chr6 92980536 92980571 -89434671 + (TG)n Simple_repeat Simple_repeat 2 36 0 1397 212 70 100 chr6 92980571 92980711 -89434531 + L1MC4 LINE L1 7899 8042 0 465 281 156 72 chr6 92980790 92981124 -89434118 - L1MC4a LINE L1 -1328 4818 4457 24 0 0 0 chr6 92981664 92981688 -89433554 + AT_rich Low_complexity Low_complexity 1 24 0 3941 39 2 0 chr6 92982043 92982506 -89432736 + L1P3 LINE L1 5320 5783 -371 292 290 7 22 chr6 92982544 92982682 -89432560 + GA-rich Low_complexity Low_complexity 1 136 0 2092 37 4 4 chr6 92983334 92983576 -89431666 - L1PA5 LINE L1 -4 6150 5909 181 280 59 68 chr6 92983701 92983819 -89431423 + L2 LINE L2 1916 2032 -1282 7454 43 24 5 chr6 92985607 92986764 -89428478 + L1PA6 LINE L1 4969 6150 -4 2162 119 0 0 chr6 92986871 92987164 -89428078 - AluSc SINE Alu -12 297 5 405 177 0 0 chr6 92987428 92987507 -89427735 + (TA)n Simple_repeat Simple_repeat 2 80 0 1392 64 112 0 chr6 92987517 92987704 -89427538 + L1PA6 LINE L1 5782 5989 -165 198 209 0 0 chr6 92987707 92987750 -89427492 + (TA)n Simple_repeat Simple_repeat 1 43 0 3066 81 3 0 chr6 92989583 92989966 -89425276 + L1PA7 LINE L1 5769 6152 -2 802 361 86 28 chr6 92991799 92992564 -89422678 - L2 LINE L2 -467 2847 2038 23 54 0 0 chr6 92993043 92993080 -89422162 + AT_rich Low_complexity Low_complexity 1 37 0 249 212 47 24 chr6 92993197 92993282 -89421960 + L2 LINE L2 2997 3083 -189 21 71 0 0 chr6 92993362 92993404 -89421838 + AT_rich Low_complexity Low_complexity 1 42 0 223 209 0 0 chr6 92993547 92993590 -89421652 + L2 LINE L2 3230 3272 0 2729 127 2 38 chr6 92996207 92996625 -89418617 - MER57A LTR ERV1 0 403 1 458 241 61 66 chr6 92996950 92997162 -89418080 - MER106A DNA MER1_type -1 235 25 21 0 0 0 chr6 92997600 92997621 -89417621 + AT_rich Low_complexity Low_complexity 1 21 0 201 175 0 0 chr6 92998725 92998765 -89416477 + (TA)n Simple_repeat Simple_repeat 1 40 0 30624 73 3 4 chr6 92998765 93003577 -89411665 - L1PA6 LINE L1 -9 6460 1650 44524 44 1 2 chr6 93003582 93009741 -89405501 + L1PA3 LINE L1 9 6155 0 2905 115 84 7 chr6 93009744 93010196 -89405046 + L1MA1 LINE L1 5816 6302 0 180 0 0 0 chr6 93010295 93010315 -89404927 + (A)n Simple_repeat Simple_repeat 1 20 0 5904 158 16 24 chr6 93010315 93011369 -89403873 - L1PA6 LINE L1 -4796 1665 620 1540 159 19 11 chr6 93011342 93011606 -89403636 - L1PA6 LINE L1 -6195 266 1 * 1645 209 99 0 chr6 93011855 93012238 -89403004 - MLT1G LTR MaLR -13 577 157 182 222 123 62 chr6 93012996 93013077 -89402165 - MIR SINE MIR -5 257 172 2487 166 11 43 chr6 93013079 93013186 -89402056 + MSTB LTR MaLR 1 110 -316 2766 7 0 10 chr6 93013186 93013490 -89401752 + AluYa5 SINE Alu 1 301 -10 2487 166 11 43 chr6 93013490 93013822 -89401420 + MSTB LTR MaLR 110 426 0 9867 183 8 10 chr6 93013822 93015476 -89399766 + MSTB-int LTR MaLR 1 1650 -1 1852 174 31 37 chr6 93015479 93015829 -89399413 + MSTB LTR MaLR 79 426 0 297 0 0 0 chr6 93017316 93017349 -89397893 + (CA)n Simple_repeat Simple_repeat 2 34 0 278 294 110 15 chr6 93018299 93018435 -89396807 - L3b LINE CR1 -6 1577 1429 611 321 50 47 chr6 93020776 93021137 -89394105 - L2 LINE L2 -1 3271 2910 941 248 9 0 chr6 93021606 93021820 -89393422 - MIR SINE MIR -5 257 42 183 271 0 56 chr6 93022198 93022305 -89392937 + L2 LINE L2 2796 2896 -418 6568 110 116 93 chr6 93022336 93023990 -89391252 + pTR5 LTR ERV1 66 2438 0 1366 182 45 98 chr6 93024192 93024295 -89390947 + MER96B DNA MER1_type? 1 108 -309 1557 164 32 16 chr6 93024295 93024606 -89390636 - L1MB4 LINE L1 -1 6179 5864 1366 182 45 98 chr6 93024606 93024835 -89390407 + MER96B DNA MER1_type? 108 307 -110 1761 174 10 13 chr6 93024835 93025146 -89390096 + AluJo SINE Alu 1 310 -2 1366 182 45 98 chr6 93025146 93025252 -89389990 + MER96B DNA MER1_type? 307 417 0 386 314 111 0 chr6 93025442 93025595 -89389647 + L2 LINE L2 3098 3267 -5 891 94 0 0 chr6 93026784 93026901 -89388341 + FLAM_C SINE Alu 1 117 -16 219 102 41 41 chr6 93027093 93027142 -89388100 + (TTA)n Simple_repeat Simple_repeat 1 49 0 1608 162 16 114 chr6 93027153 93027584 -89387658 - MLT1B LTR MaLR 0 390 2 2312 74 20 0 chr6 93027832 93028130 -89387112 - AluY SINE Alu -7 304 1 661 204 171 0 chr6 93028270 93028422 -89386820 - MER45A DNA AcHobo 0 178 1 428 308 118 37 chr6 93028603 93028977 -89386265 - MLT1J2 LTR MaLR -46 404 1 1933 233 11 12 chr6 93029234 93029734 -89385508 - MER89 LTR ERV1 0 559 28 777 203 0 0 chr6 93029749 93029882 -89385360 - FLAM_A SINE Alu 0 133 1 332 333 36 0 chr6 93029959 93030070 -89385172 - L2 LINE L2 0 3313 3199 727 151 124 38 chr6 93030071 93030257 -89384985 - MER105 DNA DNA -2 202 1 1236 245 20 81 chr6 93030301 93030844 -89384398 + MER34 LTR ERV1 33 542 0 2045 123 13 29 chr6 93030999 93031374 -89383868 + L1MA1 LINE L1 5933 6301 -1 2217 64 0 4 chr6 93031374 93031639 -89383603 - AluY SINE Alu -17 294 31 7282 41 0 12 chr6 93031669 93032752 -89382490 + L1PA6 LINE L1 5082 6153 -1 336 318 136 19 chr6 93033316 93033574 -89381668 - L2 LINE L2 -339 2975 2688 482 233 59 92 chr6 93033687 93034078 -89381164 + LTR37A LTR ERV1 49 426 0 618 225 118 0 chr6 93034080 93034249 -89380993 + L1MC/D LINE L1 5574 5762 -2046 7603 32 0 0 chr6 93034291 93035322 -89379920 + L1PA3 LINE L1 5122 6152 -3 721 162 0 0 chr6 93035366 93035477 -89379765 + MER3 DNA MER1_type 1 111 -98 22 70 0 0 chr6 93035646 93035689 -89379553 + AT_rich Low_complexity Low_complexity 1 43 0 264 242 16 0 chr6 93035750 93035812 -89379430 - MER58 DNA MER1_type -161 63 1 280 187 27 13 chr6 93035812 93035887 -89379355 + MLT1I LTR MaLR 334 409 0 394 226 135 8 chr6 93036026 93036159 -89379083 - MLT1L LTR MaLR 0 615 466 184 373 15 0 chr6 93036581 93036648 -89378594 - L2 LINE L2 0 3272 3205 2004 99 0 96 chr6 93036867 93037199 -89378043 + AluSc SINE Alu 1 300 -9 1684 166 4 8 chr6 93038391 93038650 -89376592 + AluJo SINE Alu 1 258 -54 3095 207 12 12 chr6 93038707 93039359 -89375883 + MER82 DNA MER2_type 1 652 -1 224 360 9 9 chr6 93040227 93040338 -89374904 + MIR3 SINE MIR 89 199 -9 1302 160 51 4 chr6 93041571 93041846 -89373396 - L1MA5 LINE L1 0 6300 6013 230 206 56 0 chr6 93042008 93042115 -89373127 + (TAA)n Simple_repeat Simple_repeat 2 114 0 290 78 0 20 chr6 93042757 93042808 -89372434 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 11369 29 4 0 chr6 93042808 93044960 -89370282 - L1PA3 LINE L1 -24 6131 3976 11150 38 0 0 chr6 93044959 93046400 -89368842 + L1PA3 LINE L1 2544 3984 -2162 * 250 304 192 16 chr6 93046595 93046720 -89368522 - MIR3 SINE MIR 0 208 62 6061 36 0 1 chr6 93047002 93047725 -89367517 - L1PA3 LINE L1 -5 6150 5429 2333 12 0 1 chr6 93047725 93048064 -89367178 + L1PA3 LINE L1 5105 5442 -713 1872 146 0 39 chr6 93048401 93048709 -89366533 - AluSx SINE Alu -16 296 1 261 277 53 11 chr6 93048985 93049079 -89366163 + L3 LINE CR1 1317 1414 -163 485 195 31 145 chr6 93049085 93049152 -89366090 + L1MC4 LINE L1 7506 7579 -463 2403 70 0 0 chr6 93049152 93049450 -89365792 + AluY SINE Alu 1 298 -13 485 195 31 145 chr6 93049450 93049700 -89365542 + L1MC4 LINE L1 7579 7787 -255 210 345 48 12 chr6 93049777 93049861 -89365381 + L3 LINE CR1 1434 1520 -57 216 0 0 0 chr6 93049922 93049946 -89365296 + (A)n Simple_repeat Simple_repeat 1 24 0 2399 109 3 0 chr6 93049980 93050292 -89364950 + AluSq SINE Alu 1 313 0 1603 183 135 9 chr6 93050685 93051123 -89364119 + LTR54B LTR ERV1 4 496 -2 284 232 14 14 chr6 93051140 93051209 -89364033 - L2 LINE L2 -10 3262 3194 1121 19 25 6 chr6 93051396 93051558 -89363684 - L1P1 LINE L1 -659 5496 5332 535 200 21 116 chr6 93051558 93051585 -89363657 - MER58A DNA MER1_type -2203 217 189 768 190 139 121 chr6 93051585 93051974 -89363268 + MSTD LTR MaLR 1 396 0 535 200 21 116 chr6 93051974 93052136 -89363106 - MER58A DNA MER1_type -2231 189 46 26 0 0 0 chr6 93052386 93052412 -89362830 + AT_rich Low_complexity Low_complexity 1 26 0 220 248 177 53 chr6 93052606 93052719 -89362523 + MIR3 SINE MIR 4 130 -78 887 169 0 7 chr6 93052912 93053060 -89362182 + FRAM SINE Alu 1 146 -30 26 0 0 0 chr6 93053060 93053086 -89362156 + AT_rich Low_complexity Low_complexity 1 26 0 398 226 12 0 chr6 93055116 93055200 -89360042 + MER7A DNA MER2_type 2 84 -262 * 5399 124 34 9 chr6 93055182 93056111 -89359131 + Tigger3b DNA MER2_type 278 1230 -1 264 100 0 0 chr6 93056169 93056209 -89359033 + (CA)n Simple_repeat Simple_repeat 1 40 0 228 122 0 0 chr6 93056428 93056469 -89358773 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 213 154 0 0 chr6 93056929 93056968 -89358274 + (TG)n Simple_repeat Simple_repeat 1 39 0 255 61 0 0 chr6 93057464 93057497 -89357745 + (TG)n Simple_repeat Simple_repeat 1 33 0 1224 198 72 94 chr6 93057902 93058372 -89356870 + MLT1C LTR MaLR 6 465 -2 504 184 0 0 chr6 93059595 93059682 -89355560 + FRAM SINE Alu 75 161 -15 340 314 99 5 chr6 93059928 93060151 -89355091 - L1MC/D LINE L1 -2154 5654 5411 460 288 177 9 chr6 93060201 93060416 -89354826 + MIR SINE MIR 12 262 0 688 288 125 8 chr6 93060658 93060922 -89354320 - MLT1I LTR MaLR -2 407 113 218 337 72 96 chr6 93060960 93061205 -89354037 - L2 LINE L2 -26 3246 3014 3011 154 16 16 chr6 93061205 93061768 -89353474 - L1MB3 LINE L1 -1 6182 5620 218 337 72 96 chr6 93061768 93061937 -89353305 - L2 LINE L2 -258 3014 2842 2416 103 0 3 chr6 93063720 93064032 -89351210 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr6 93064079 93064111 -89351131 + AT_rich Low_complexity Low_complexity 1 32 0 6479 107 17 10 chr6 93064847 93065936 -89349306 + L1MA3 LINE L1 5210 6305 0 963 254 9 0 chr6 93065943 93066167 -89349075 + MER21B LTR ERV1 279 504 -359 1770 183 3 3 chr6 93066808 93067103 -89348139 - AluJo SINE Alu -15 297 3 1990 154 0 0 chr6 93067114 93067406 -89347836 - AluSx SINE Alu -14 298 7 480 257 15 37 chr6 93068036 93068172 -89347070 - MER5B DNA MER1_type 0 178 46 186 103 0 0 chr6 93068198 93068227 -89347015 + (TA)n Simple_repeat Simple_repeat 2 30 0 444 191 0 0 chr6 93068233 93068327 -89346915 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 332 240 0 62 chr6 93068339 93068435 -89346807 + L1MC4 LINE L1 6614 6703 -1339 389 219 39 54 chr6 93068435 93068640 -89346602 - L1MC5 LINE L1 -70 7891 7690 237 256 103 13 chr6 93068809 93068887 -89346355 + L2 LINE L2 2255 2339 -975 397 316 87 23 chr6 93069044 93069262 -89345980 - L1MC4a LINE L1 -1762 6046 5815 6467 41 1 0 chr6 93069266 93070088 -89345154 - L1PA4 LINE L1 -3 6152 5327 20441 80 2 0 chr6 93070123 93072949 -89342293 - L1P LINE L1 -3297 2849 19 2145 95 3 14 chr6 93073038 93073332 -89341910 - AluY SINE Alu -4 307 17 305 258 96 56 chr6 93073570 93073748 -89341494 - MER102b DNA MER1_type -50 291 107 1167 221 36 51 chr6 93073857 93074192 -89341050 + MLT1A1 LTR MaLR 2 331 -34 2182 118 3 0 chr6 93074265 93074554 -89340688 + AluSx SINE Alu 1 290 -22 643 215 8 0 chr6 93074625 93074746 -89340496 - FLAM_A SINE Alu -11 122 1 245 116 0 23 chr6 93074747 93074790 -89340452 + MLT1A1 LTR MaLR 333 374 0 1606 180 46 26 chr6 93075242 93075548 -89339694 + AluJo SINE Alu 1 312 0 2353 129 19 12 chr6 93075688 93076106 -89339136 - L1MA2 LINE L1 0 6304 5884 2231 106 3 0 chr6 93076504 93076797 -89338445 - AluSq SINE Alu -19 294 1 521 72 0 0 chr6 93077015 93077084 -89338158 - THE1B LTR MaLR -295 69 1 341 306 38 12 chr6 93077089 93077249 -89337993 + L1ME3A LINE L1 5777 5940 -230 1101 272 34 3 chr6 93079871 93080224 -89335018 + HAL1 LINE L1 2 365 -2142 1650 175 32 43 chr6 93080234 93080366 -89334876 + Tigger7 DNA MER2_type 1 133 -2354 1984 134 38 3 chr6 93080366 93080657 -89334585 + AluSx SINE Alu 1 301 -11 1650 175 32 43 chr6 93080657 93080872 -89334370 + Tigger7 DNA MER2_type 133 344 -2143 777 162 14 7 chr6 93080867 93081015 -89334227 + Tigger7 DNA MER2_type 2343 2491 0 * 1451 292 76 32 chr6 93081033 93081986 -89333256 + HAL1 LINE L1 404 1397 -1110 1255 255 88 34 chr6 93082004 93082412 -89332830 + LTR16A LTR ERVL 18 447 -3 1578 220 52 112 chr6 93082526 93082788 -89332454 + HAL1 LINE L1 1463 1739 -768 180 97 0 0 chr6 93082788 93082819 -89332423 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1578 220 52 112 chr6 93082819 93083180 -89332062 + HAL1 LINE L1 1739 2016 -491 2001 118 32 3 chr6 93083180 93083494 -89331748 + L1PB3 LINE L1 5825 6147 -7 1578 220 52 112 chr6 93083494 93083793 -89331449 + HAL1 LINE L1 2016 2331 -176 2488 60 0 7 chr6 93083817 93084116 -89331126 + AluY SINE Alu 1 297 -14 1050 171 19 48 chr6 93084532 93084768 -89330474 + AluJb SINE Alu 89 312 0 940 147 0 0 chr6 93085356 93085492 -89329750 + AluJb SINE Alu 1 136 -176 766 29 0 10 chr6 93085492 93085586 -89329656 - L1PA8A LINE L1 -319 5812 5718 922 101 0 22 chr6 93085586 93085724 -89329518 + L1PA8A LINE L1 5992 6126 -5 1230 169 0 0 chr6 93085739 93085928 -89329314 + AluJb SINE Alu 122 310 -2 311 123 35 0 chr6 93085928 93085985 -89329257 + GA-rich Low_complexity Low_complexity 1 59 0 850 188 0 22 chr6 93086129 93086429 -89328813 + MLT1A1 LTR MaLR 1 365 0 207 0 0 0 chr6 93086472 93086495 -89328747 + (TTAG)n Simple_repeat Simple_repeat 2 24 0 2560 124 42 0 chr6 93086502 93086912 -89328330 - L1PA16 LINE L1 -10 6156 5730 294 267 0 0 chr6 93087053 93087128 -89328114 - MIR SINE MIR -28 234 160 573 267 6 31 chr6 93087303 93087464 -89327778 - MIR SINE MIR -92 170 14 22 0 0 0 chr6 93087751 93087773 -89327469 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 93088720 93088740 -89326502 + (TAA)n Simple_repeat Simple_repeat 1 20 0 693 193 88 97 chr6 93088741 93088969 -89326273 - MIR SINE MIR -8 254 29 325 275 107 20 chr6 93090708 93090857 -89324385 + Charlie8 DNA MER1_type 85 246 -2171 648 239 105 71 chr6 93090918 93091156 -89324086 + MIR SINE MIR 17 262 0 267 31 0 0 chr6 93091165 93091197 -89324045 + (CAT)n Simple_repeat Simple_repeat 1 32 0 343 206 41 0 chr6 93091924 93092021 -89323221 + MER20B DNA MER1_type 36 136 -647 880 330 79 34 chr6 93092400 93093027 -89322215 - L2 LINE L2 -31 3282 2618 236 308 90 26 chr6 93093001 93093079 -89322163 + L3 LINE CR1 1483 1565 -12 * 18820 111 11 11 chr6 93093706 93096647 -89318595 + HERV9 LTR ERV1 5461 8399 0 647 183 158 32 chr6 93096647 93096893 -89318349 + LTR12 LTR ERV1 1 277 -437 319 214 41 20 chr6 93096893 93096991 -89318251 + LTR30 LTR ERV1 544 643 -79 597 163 0 0 chr6 93096992 93097090 -89318152 + LTR12 LTR ERV1 481 578 -136 915 163 26 5 chr6 93097090 93097280 -89317962 - L1 LINE L1 -1108 6457 6264 14217 164 51 19 chr6 93097299 93101052 -89314190 + L1PB1 LINE L1 107 4256 -2611 804 73 0 0 chr6 93101052 93101177 -89314065 + AluY SINE Alu 187 311 0 14217 164 51 19 chr6 93101177 93103869 -89311373 + L1PB1 LINE L1 4256 6860 -7 1181 67 17 6 chr6 93104014 93104037 -89311205 + (GAAA)n Simple_repeat Simple_repeat 1 22 -502 1878 126 7 0 chr6 93104037 93104306 -89310936 + AluSp SINE Alu 43 313 0 1181 67 17 6 chr6 93104306 93104355 -89310887 + (GAAA)n Simple_repeat Simple_repeat 22 524 0 1181 67 17 6 chr6 93104355 93104533 -89310709 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 11179 194 28 3 chr6 93104603 93107597 -89307645 - L1 LINE L1 -1286 6279 3212 28 48 0 0 chr6 93107604 93107646 -89307596 + AT_rich Low_complexity Low_complexity 1 42 0 384 358 116 0 chr6 93107698 93107888 -89307354 - MIR SINE MIR -49 213 2 183 80 0 0 chr6 93108433 93108458 -89306784 + (TA)n Simple_repeat Simple_repeat 2 26 0 256 224 0 53 chr6 93108816 93108892 -89306350 + MER112 DNA MER1_type 1 72 -188 408 71 0 0 chr6 93108927 93108983 -89306259 + (CA)n Simple_repeat Simple_repeat 1 56 0 180 299 78 13 chr6 93109054 93109131 -89306111 - MIR SINE MIR -147 115 34 392 257 20 10 chr6 93109692 93109793 -89305449 + MIR SINE MIR 22 123 -85 249 245 0 0 chr6 93110322 93110375 -89304867 + L2 LINE L2 3259 3311 -2 22 56 0 0 chr6 93113189 93113225 -89302017 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr6 93113261 93113292 -89301950 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 93113834 93113855 -89301387 + AT_rich Low_complexity Low_complexity 1 21 0 263 243 14 14 chr6 93113927 93113997 -89301245 + U4 snRNA snRNA 2 71 -74 390 42 0 0 chr6 93114039 93114087 -89301155 + (TA)n Simple_repeat Simple_repeat 1 48 0 216 0 0 0 chr6 93115715 93115739 -89299503 + (CGGGGG)n Simple_repeat Simple_repeat 3 26 0 339 269 164 54 chr6 93117245 93117412 -89297830 + MIR SINE MIR 71 254 -8 228 300 100 71 chr6 93117739 93117909 -89297333 + MER5A DNA MER1_type 9 183 -6 * 592 224 179 0 chr6 93117889 93118023 -89297219 + MER5B DNA MER1_type 21 178 0 262 291 10 0 chr6 93121622 93121725 -89293517 + MER112 DNA MER1_type 67 170 -90 818 206 5 86 chr6 93122255 93122463 -89292779 + MER20 DNA MER1_type 1 191 -28 981 203 119 21 chr6 93122463 93122825 -89292417 + MSTC LTR MaLR 1 424 -4 641 253 168 17 chr6 93123931 93124223 -89291019 - LTR33 LTR ERVL -142 379 44 333 0 0 0 chr6 93124232 93124269 -89290973 + (TG)n Simple_repeat Simple_repeat 2 38 0 394 280 213 9 chr6 93126526 93126737 -89288505 - MIR SINE MIR -3 259 6 21 0 0 0 chr6 93127120 93127141 -89288101 + AT_rich Low_complexity Low_complexity 1 21 0 472 298 95 12 chr6 93128353 93128521 -89286721 - MIR SINE MIR -80 182 1 254 229 16 0 chr6 93128953 93129014 -89286228 + (TA)n Simple_repeat Simple_repeat 1 62 0 3000 68 2 0 chr6 93129050 93129448 -89285794 + MLT2A1 LTR ERVL 1 399 -45 360 148 0 0 chr6 93129451 93129512 -89285730 + (TA)n Simple_repeat Simple_repeat 1 61 0 435 18 0 0 chr6 93129528 93129583 -89285659 + MLT2A1 LTR ERVL 390 444 0 231 88 0 0 chr6 93130751 93130785 -89284457 + (TG)n Simple_repeat Simple_repeat 2 35 0 380 276 129 6 chr6 93130825 93130995 -89284247 + MIR SINE MIR 7 197 -65 1871 84 111 0 chr6 93131009 93131270 -89283972 - AluSc SINE Alu -19 290 1 431 292 48 9 chr6 93132304 93132457 -89282785 - MIR SINE MIR -21 187 18 224 259 147 35 chr6 93132707 93132823 -89282419 + L2 LINE L2 3134 3262 -10 373 228 53 18 chr6 93133200 93133314 -89281928 + MER117 DNA MER1_type 15 132 -65 507 300 115 47 chr6 93134258 93134771 -89280471 - MLT1K LTR MaLR 0 588 41 2355 94 10 3 chr6 93135584 93135891 -89279351 + AluSx SINE Alu 1 309 -3 193 260 134 55 chr6 93138050 93138177 -89277065 - L2 LINE L2 -3 3269 3133 343 312 71 43 chr6 93138904 93139045 -89276197 - L2 LINE L2 0 3313 3169 373 272 105 31 chr6 93139644 93139835 -89275407 + L2 LINE L2 2185 2389 -925 550 240 5 97 chr6 93140099 93140295 -89274947 - MER5B DNA MER1_type 0 178 1 383 296 62 120 chr6 93140509 93140976 -89274266 + L2 LINE L2 2827 3266 -6 3317 132 19 15 chr6 93141981 93142510 -89272732 + LTR26B LTR ERV1 1 531 0 304 152 0 45 chr6 93145839 93145905 -89269337 - L1M2 LINE L1 -742 5570 5508 2006 209 20 0 chr6 93145918 93146358 -89268884 - L1M2 LINE L1 -1087 5059 4611 23791 94 12 5 chr6 93146358 93150808 -89264434 - L1PA7 LINE L1 -4 6150 1668 3396 153 70 14 chr6 93150782 93150879 -89264363 - L1M2 LINE L1 -1524 4622 4532 * 5004 136 53 15 chr6 93150879 93151091 -89264151 + MER4D LTR ERV1 1 203 -700 2294 75 0 0 chr6 93151091 93151373 -89263869 - AluY SINE Alu -7 304 23 5004 136 53 15 chr6 93151373 93152030 -89263212 + MER4D LTR ERV1 203 903 0 3396 153 70 14 chr6 93152030 93152672 -89262570 - L1M2 LINE L1 -1614 4532 3841 3500 161 23 111 chr6 93153588 93154605 -89260637 + L1MC3 LINE L1 5214 5403 -743 1692 169 116 38 chr6 93154631 93154787 -89260455 + MSTA LTR MaLR 1 143 -285 6230 21 0 0 chr6 93154787 93155533 -89259709 + L1PA3 LINE L1 5434 6179 0 1692 169 116 38 chr6 93155533 93155772 -89259470 + MSTA LTR MaLR 143 428 0 317 230 237 22 chr6 93155773 93155912 -89259330 + L1MC2 LINE L1 6161 6329 -15 246 139 17 104 chr6 93159702 93159817 -89255425 + T-rich Low_complexity Low_complexity 2 106 0 1775 99 43 56 chr6 93159829 93160151 -89255091 - L1MA2 LINE L1 0 6304 5987 1374 171 91 22 chr6 93160356 93160630 -89254612 - MER1B DNA MER1_type -1 338 46 201 132 0 0 chr6 93160797 93160835 -89254407 + (TTAA)n Simple_repeat Simple_repeat 4 41 0 547 213 107 7 chr6 93161755 93161905 -89253337 - MIR SINE MIR 0 262 98 27 0 0 0 chr6 93162144 93162171 -89253071 + AT_rich Low_complexity Low_complexity 1 27 0 187 339 78 67 chr6 93162831 93163114 -89252128 + L2 LINE L2 2982 3267 -5 285 297 77 0 chr6 93165100 93165191 -89250051 + MIR SINE MIR 12 109 -153 1719 187 26 3 chr6 93165464 93165769 -89249473 + AluJb SINE Alu 1 312 0 902 162 12 0 chr6 93165789 93165962 -89249280 + GA-rich Low_complexity Low_complexity 1 175 0 708 327 73 18 chr6 93166098 93166590 -89248652 - LTR33 LTR ERVL 0 521 3 23 0 0 0 chr6 93170251 93170274 -89244968 + AT_rich Low_complexity Low_complexity 1 23 0 363 303 87 50 chr6 93171489 93171730 -89243512 - MIR SINE MIR 0 262 13 227 290 120 30 chr6 93173282 93173382 -89241860 + MIR SINE MIR 37 145 -63 1825 179 23 3 chr6 93173399 93173752 -89241490 + MER82 DNA MER2_type 2 361 -292 6630 122 16 10 chr6 93173757 93174627 -89240615 - L1MA1 LINE L1 0 7721 6858 2372 110 0 0 chr6 93174627 93174937 -89240305 - AluY SINE Alu -1 310 1 6630 122 16 10 chr6 93174937 93175793 -89239449 - L1MA1 LINE L1 -863 6858 5984 * 8439 155 18 12 chr6 93175777 93178854 -89236388 - L1MA1 LINE L1 -1878 5687 2596 4450 166 33 58 chr6 93178842 93179720 -89235522 - L1MA1 LINE L1 -5423 2142 1287 * 380 88 18 0 chr6 93179720 93179777 -89235465 - L1PA16 LINE L1 -192 5974 5917 576 250 0 44 chr6 93179778 93179914 -89235328 + MER82 DNA MER2_type 515 644 -9 190 359 22 22 chr6 93180019 93180111 -89235131 + L2 LINE L2 3220 3311 -2 197 206 0 41 chr6 93181336 93181409 -89233833 + GA-rich Low_complexity Low_complexity 3 72 0 1567 194 0 32 chr6 93181432 93181716 -89233526 + AluJo SINE Alu 1 275 -37 3700 242 82 17 chr6 93181744 93182941 -89232301 + HAL1 LINE L1 418 1692 -815 280 311 0 0 chr6 93182962 93183068 -89232174 + L1ME4a LINE L1 5767 5872 -298 438 154 0 0 chr6 93183111 93183189 -89232053 + L1MA9 LINE L1 6200 6277 -35 229 203 14 14 chr6 93183213 93183282 -89231960 + L1ME4a LINE L1 5883 5951 -213 2148 85 0 35 chr6 93184184 93184360 -89230882 - AluY SINE Alu -6 305 143 192 97 0 0 chr6 93184360 93184391 -89230851 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2148 85 0 35 chr6 93184391 93184530 -89230712 - AluY SINE Alu -168 143 1 281 122 110 24 chr6 93185388 93185470 -89229772 + L1ME4a LINE L1 5975 6063 -58 460 218 142 24 chr6 93185523 93185734 -89229508 + L1ME4a LINE L1 5844 6079 -42 493 155 0 0 chr6 93185746 93185847 -89229395 - FRAM SINE Alu 0 175 75 2320 78 24 3 chr6 93185877 93186173 -89229069 + AluSc SINE Alu 1 302 -7 7853 151 78 4 chr6 93187882 93190492 -89224750 + L1PBa LINE L1 6 2998 -3864 2305 141 6 0 chr6 93190492 93190852 -89224390 + L1PB1 LINE L1 5780 6143 -8 614 156 62 29 chr6 93191247 93191404 -89223838 - MSTC LTR MaLR -189 176 1 184 143 0 0 chr6 93192438 93192466 -89222776 + MIR SINE MIR 224 251 -11 1469 289 68 19 chr6 93192809 93193426 -89221816 + L1M4c LINE L1 16 662 -5880 2111 196 80 107 chr6 93193434 93194276 -89220966 + LTR1B LTR ERV1 8 826 0 564 226 96 7 chr6 93194309 93194370 -89220872 + L1M4c LINE L1 716 770 -5772 180 77 0 0 chr6 93194370 93194396 -89220846 + (CA)n Simple_repeat Simple_repeat 2 27 0 564 226 96 7 chr6 93194396 93194480 -89220762 + L1M4c LINE L1 770 874 -5668 24 32 0 0 chr6 93194528 93194559 -89220683 + AT_rich Low_complexity Low_complexity 1 31 0 712 171 31 47 chr6 93194576 93194769 -89220473 + L1M4c LINE L1 867 1056 -5486 2663 212 105 82 chr6 93194770 93196213 -89219029 - MER109 Unknown Unknown -1143 1289 107 2269 219 16 40 chr6 93196790 93197236 -89218006 + L1M4c LINE L1 1040 1466 -5076 2478 65 0 13 chr6 93197236 93197546 -89217696 + AluY SINE Alu 1 306 -5 2269 219 16 40 chr6 93197546 93197778 -89217464 + L1M4c LINE L1 1466 1702 -4840 500 309 140 16 chr6 93197798 93198041 -89217201 - MLT1L LTR MaLR -340 275 3 2308 150 20 22 chr6 93198665 93199118 -89216124 + L1MA7 LINE L1 5836 6287 -4 7021 73 2 0 chr6 93199132 93200049 -89215193 + L1PA8 LINE L1 5254 6172 0 1744 143 4 0 chr6 93200645 93200911 -89214331 - MER1A DNA MER1_type 0 529 263 561 158 46 5 chr6 93200926 93201058 -89214184 + L1M4c LINE L1 1779 2351 -4293 6351 91 8 42 chr6 93201176 93202747 -89212495 - L1PA7 LINE L1 -6 6148 4603 34293 112 15 10 chr6 93202753 93206423 -89208819 + L1PA6 LINE L1 11 3661 -2493 207 0 0 0 chr6 93206423 93206446 -89208796 + (CA)n Simple_repeat Simple_repeat 2 24 0 34293 112 15 10 chr6 93206446 93208867 -89206375 + L1PA6 LINE L1 3661 6132 -22 5296 23 0 0 chr6 93208867 93209476 -89205766 + L1PA3 LINE L1 5544 6152 -3 34293 112 15 10 chr6 93209476 93209492 -89205750 + L1PA6 LINE L1 6132 6146 -8 24344 135 22 80 chr6 93209486 93214376 -89200866 - L1PA7 LINE L1 -1527 4619 12 * 23739 103 2 2 chr6 93214387 93218709 -89196533 + L1PA7 LINE L1 1832 6154 0 14696 168 46 9 chr6 93218984 93223367 -89191875 + L1MA3 LINE L1 1061 5604 -1961 6476 147 7 8 chr6 93223375 93224764 -89190478 + L1MA3 LINE L1 6337 7724 0 5141 188 16 9 chr6 93225676 93227183 -89188059 + L1MA9 LINE L1 5985 7505 -226 2387 122 13 19 chr6 93227183 93227560 -89187682 - THE1C LTR MaLR 0 375 1 5141 188 16 9 chr6 93227560 93227757 -89187485 + L1MA9 LINE L1 7505 7699 -32 2095 131 63 26 chr6 93228154 93228505 -89186737 - THE1B LTR MaLR 0 364 1 10167 103 72 1 chr6 93228505 93229981 -89185261 - THE1B-int LTR MaLR 0 1580 1 2024 146 48 25 chr6 93229981 93230337 -89184905 - THE1B LTR MaLR 0 364 1 1464 247 39 20 chr6 93230609 93231067 -89184175 + MLT1C LTR MaLR 1 467 0 250 304 17 0 chr6 93232179 93232248 -89182994 + MIR SINE MIR 55 127 -81 222 167 0 42 chr6 93232845 93232893 -89182349 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 215 314 14 0 chr6 93235075 93235145 -89180097 + GA-rich Low_complexity Low_complexity 4 74 0 328 161 0 37 chr6 93235194 93235275 -89179967 - L1MA9 LINE L1 -9 6303 6226 782 182 0 5 chr6 93235282 93235469 -89179773 + L1M1 LINE L1 2437 2622 -4943 1082 185 8 36 chr6 93235472 93235721 -89179521 - L1MA10 LINE L1 -90 6244 6003 865 243 67 0 chr6 93236455 93236665 -89178577 - MER58A DNA MER1_type 0 224 1 925 282 29 11 chr6 93236807 93237113 -89178129 + MLT1G1 LTR MaLR 1 354 -241 442 316 59 5 chr6 93237105 93237292 -89177950 + MLT1J2 LTR MaLR 156 352 -98 * 764 222 60 0 chr6 93237840 93238025 -89177217 + MER58B DNA MER1_type 3 198 -143 494 45 0 0 chr6 93238033 93238099 -89177143 - L1PA4 LINE L1 0 6155 6090 495 47 0 0 chr6 93238099 93238163 -89177079 + L1PA4 LINE L1 6024 6087 -68 640 204 8 0 chr6 93238163 93238295 -89176947 + MER58B DNA MER1_type 205 337 -4 216 333 0 0 chr6 93239700 93239772 -89175470 - MIR3 SINE MIR -5 203 132 433 267 34 40 chr6 93240734 93240910 -89174332 + MER5B DNA MER1_type 4 178 0 634 275 100 15 chr6 93242720 93242989 -89172253 + MLT1J1 LTR MaLR 23 314 -132 329 243 184 37 chr6 93242996 93243132 -89172110 - MIR SINE MIR -87 175 20 893 226 0 0 chr6 93244012 93244176 -89171066 + AluJb SINE Alu 137 300 -12 729 154 0 0 chr6 93244501 93244605 -89170637 - FLAM_A SINE Alu -19 123 20 25 0 0 0 chr6 93244814 93244839 -89170403 + AT_rich Low_complexity Low_complexity 1 25 0 423 0 0 0 chr6 93245519 93245566 -89169676 + (CA)n Simple_repeat Simple_repeat 2 48 0 540 194 0 32 chr6 93245995 93246119 -89169123 + MER106B DNA MER1_type 30 149 -910 24 0 0 0 chr6 93246128 93246152 -89169090 + AT_rich Low_complexity Low_complexity 1 24 0 246 32 0 0 chr6 93246538 93246569 -89168673 + (CACAT)n Simple_repeat Simple_repeat 4 34 0 411 277 55 43 chr6 93246738 93246994 -89168248 - MIR SINE MIR -2 260 2 407 269 28 57 chr6 93247004 93247145 -89168097 + MIR SINE MIR 15 151 -111 720 239 20 0 chr6 93247200 93247397 -89167845 + L1M4 LINE L1 4533 4733 -1413 6048 105 20 11 chr6 93247419 93248797 -89166445 - L1PA16 LINE L1 -2 6164 4775 6895 202 10 12 chr6 93248806 93249885 -89165357 - L1 LINE L1 -1279 4867 3791 2240 123 0 0 chr6 93249885 93250186 -89165056 - AluSx SINE Alu -11 301 1 6895 202 10 12 chr6 93250186 93250738 -89164504 - L1 LINE L1 -2355 3791 3239 836 160 24 0 chr6 93250743 93250912 -89164330 + L1M4 LINE L1 4724 4896 -1250 383 175 50 0 chr6 93250912 93250992 -89164250 + L1MC1 LINE L1 6250 6333 0 1736 263 13 7 chr6 93252990 93253446 -89161796 - LTR31 LTR ERV1 -15 604 146 393 58 0 0 chr6 93254591 93254643 -89160599 + (CA)n Simple_repeat Simple_repeat 1 52 0 295 276 60 37 chr6 93255134 93255268 -89159974 - MIR SINE MIR 0 262 126 317 289 237 13 chr6 93255782 93256399 -89158843 + L2 LINE L2 2005 2759 -555 180 0 0 0 chr6 93256518 93256538 -89158704 + (TG)n Simple_repeat Simple_repeat 1 20 0 389 335 120 0 chr6 93257018 93257185 -89158057 - MIR SINE MIR -55 207 21 4395 182 44 11 chr6 93258918 93259753 -89155489 - MER21B LTR ERV1 0 863 1 250 279 51 13 chr6 93260926 93261005 -89154237 - MIR3 SINE MIR -44 164 83 1156 234 39 30 chr6 93261046 93261477 -89153765 + MER113 DNA MER1_type? 82 516 -5 183 366 49 12 chr6 93261509 93261591 -89153651 - L2 LINE L2 -63 3209 3125 219 241 0 52 chr6 93262817 93262875 -89152367 - L2 LINE L2 0 3313 3259 337 311 42 8 chr6 93263916 93264035 -89151207 + L1MC4 LINE L1 6581 6703 -1339 * 387 258 0 0 chr6 93263959 93264048 -89151194 - L1MC4 LINE L1 -1339 6703 6615 517 125 12 0 chr6 93264904 93264984 -89150258 + Tigger4(Zombi) DNA MER2_type 25 105 -2626 1141 93 6 0 chr6 93264984 93265145 -89150097 - THE1B LTR MaLR 0 364 203 * 1634 183 28 3 chr6 93265142 93265465 -89149777 + MER41B LTR ERV1 305 635 0 1575 214 35 22 chr6 93265465 93265871 -89149371 + L1ME1 LINE L1 5613 6023 -143 1338 193 78 30 chr6 93265920 93266228 -89149014 + AluJb SINE Alu 3 323 0 557 269 0 0 chr6 93266229 93266378 -89148864 + L1MA10 LINE L1 6174 6322 -12 1815 108 78 99 chr6 93267149 93267356 -89147886 - THE1B LTR MaLR 0 364 167 5847 47 0 11 chr6 93267356 93268111 -89147131 - L1PA5 LINE L1 0 6154 5432 1815 108 78 99 chr6 93268111 93268275 -89146967 - THE1B LTR MaLR -197 167 1 308 296 72 8 chr6 93269440 93269565 -89145677 - MER5A DNA MER1_type 0 189 57 311 317 102 32 chr6 93269652 93269838 -89145404 + L3b LINE CR1 1291 1489 -94 232 176 40 68 chr6 93270223 93270297 -89144945 - MLT1K LTR MaLR -331 257 186 1312 87 5 5 chr6 93271473 93271658 -89143584 - AluY SINE Alu -9 302 118 1562 185 94 79 chr6 93272066 93272420 -89142822 - L1MB5 LINE L1 -9 6165 5801 2297 75 10 0 chr6 93272420 93272714 -89142528 - AluSp SINE Alu -16 297 1 1562 185 94 79 chr6 93272714 93272840 -89142402 - L1MB5 LINE L1 -373 5801 5678 342 0 0 0 chr6 93274338 93274376 -89140866 + (TG)n Simple_repeat Simple_repeat 2 39 0 1147 139 23 14 chr6 93274506 93274721 -89140521 - L1MB2 LINE L1 -2 6169 5953 323 352 62 12 chr6 93274738 93274900 -89140342 - MIR3 SINE MIR -16 192 23 743 274 73 5 chr6 93275830 93275928 -89139314 + MIR SINE MIR 15 105 -157 5422 124 41 2 chr6 93275928 93277138 -89138104 - L1PA15 LINE L1 -3 6162 4921 743 274 73 5 chr6 93277138 93277258 -89137984 + MIR SINE MIR 105 248 -14 478 285 58 29 chr6 93277605 93277777 -89137465 + L2 LINE L2 3130 3306 -7 195 305 12 124 chr6 93277785 93278044 -89137198 + L2 LINE L2 2882 3111 -161 3006 207 61 77 chr6 93280001 93281322 -89133920 - L1MC5 LINE L1 -36 7925 6625 1536 214 0 10 chr6 93281328 93281618 -89133624 - AluJb SINE Alu -25 287 1 986 194 81 9 chr6 93281666 93281877 -89133365 - AluJb SINE Alu 0 312 87 378 324 68 54 chr6 93281879 93282175 -89133067 - L1MC4a LINE L1 -1228 6580 6281 21 36 0 0 chr6 93282232 93282260 -89132982 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 93282370 93282394 -89132848 + AT_rich Low_complexity Low_complexity 1 24 0 1298 278 88 2 chr6 93282519 93283008 -89132234 - L1MC4a LINE L1 -1982 5826 5296 1178 211 70 99 chr6 93283351 93283454 -89131788 + L1MC4 LINE L1 7463 7567 -475 3145 137 16 22 chr6 93283454 93283681 -89131561 - L1MC1 LINE L1 -3 6330 6103 1778 163 120 28 chr6 93283681 93284073 -89131169 - MSTA LTR MaLR 0 428 1 3145 137 16 22 chr6 93284073 93284400 -89130842 - L1MC1 LINE L1 -230 6103 5779 1178 211 70 99 chr6 93284400 93284753 -89130489 + L1MC4 LINE L1 7567 7901 -141 249 57 0 0 chr6 93284753 93284788 -89130454 + (TG)n Simple_repeat Simple_repeat 2 36 0 1178 211 70 99 chr6 93284788 93284927 -89130315 + L1MC4 LINE L1 7901 8042 0 225 326 35 0 chr6 93285199 93285340 -89129902 - L1MC4a LINE L1 -1544 4602 4457 24 0 0 0 chr6 93285880 93285904 -89129338 + AT_rich Low_complexity Low_complexity 1 24 0 3682 39 2 0 chr6 93286259 93286722 -89128520 + L1P3 LINE L1 5320 5783 -371 292 290 7 22 chr6 93286760 93286898 -89128344 + GA-rich Low_complexity Low_complexity 1 136 0 1962 37 4 4 chr6 93287559 93287801 -89127441 - L1PA5 LINE L1 -4 6150 5909 188 280 59 68 chr6 93287926 93288044 -89127198 + L2 LINE L2 1916 2032 -1282 7275 48 2 1 chr6 93289832 93291009 -89124233 + L1PA5 LINE L1 4969 6154 0 2111 72 3 10 chr6 93291018 93291308 -89123934 + L1PA8 LINE L1 5885 6172 0 2573 55 0 0 chr6 93291356 93291665 -89123577 + AluY SINE Alu 1 309 -2 310 347 20 0 chr6 93291678 93291776 -89123466 - MIR3 SINE MIR -23 185 86 2064 152 0 0 chr6 93292294 93292597 -89122645 + AluJb SINE Alu 1 303 -9 187 328 15 0 chr6 93292834 93292901 -89122341 - MIR SINE MIR -6 256 189 414 262 47 0 chr6 93294114 93294221 -89121021 - L2 LINE L2 0 3272 3161 552 301 49 50 chr6 93295216 93295558 -89119684 + L1MEd LINE L1 893 1234 -1256 2168 125 0 3 chr6 93295558 93295861 -89119381 + AluSg SINE Alu 1 302 -8 552 301 49 50 chr6 93295861 93296279 -89118963 + L1MEd LINE L1 1234 1732 -758 * 1664 158 45 10 chr6 93296257 93296732 -89118510 + L1M1 LINE L1 5090 5582 -704 * 1666 221 24 93 chr6 93296728 93297473 -89117769 + L1MEd LINE L1 2287 2980 -3149 1028 249 36 28 chr6 93297469 93297826 -89117416 + L1ME2 LINE L1 5795 6154 -10 * 232 274 18 26 chr6 93297849 93297962 -89117280 + L1MC5 LINE L1 7774 7885 -76 1490 209 24 20 chr6 93298076 93298368 -89116874 - AluJb SINE Alu -19 293 1 536 275 81 12 chr6 93298648 93298808 -89116434 + MIR3 SINE MIR 34 204 -4 205 250 31 62 chr6 93298954 93299018 -89116224 + L2 LINE L2 3136 3197 -75 774 288 105 37 chr6 93299058 93299572 -89115670 - MLT1H LTR MaLR 0 549 1 283 322 48 99 chr6 93300244 93300536 -89114706 + L2 LINE L2 2935 3211 -61 22 56 0 0 chr6 93300743 93300779 -89114463 + AT_rich Low_complexity Low_complexity 1 36 0 857 224 0 0 chr6 93301827 93301983 -89113259 - FRAM SINE Alu -19 157 2 408 254 35 9 chr6 93301996 93302110 -89113132 + MER5B DNA MER1_type 46 162 -16 2303 158 13 0 chr6 93302162 93302547 -89112695 + MLT1B LTR MaLR 1 390 0 2010 143 16 26 chr6 93302564 93302943 -89112299 + THE1C LTR MaLR 1 375 0 217 305 24 12 chr6 93303362 93303444 -89111798 - L2 LINE L2 -5 3267 3185 326 172 0 0 chr6 93303709 93303767 -89111475 + L2 LINE L2 3256 3313 0 966 202 32 5 chr6 93303899 93304117 -89111125 - MER67C LTR ERV1 0 710 487 360 278 20 40 chr6 93304109 93304260 -89110982 - MER67C LTR ERV1 -339 371 224 * 2302 237 84 22 chr6 93304324 93305004 -89110238 - MER72 LTR ERV1 0 722 1 310 343 15 37 chr6 93305290 93305424 -89109818 + MIR SINE MIR 21 151 -111 220 262 156 11 chr6 93305488 93305651 -89109591 + MIR SINE MIR 8 262 0 509 287 25 19 chr6 93306503 93306660 -89108582 + MIR SINE MIR 49 206 -56 5541 127 23 9 chr6 93306908 93307248 -89107994 + L1PA15 LINE L1 4302 4636 -1529 1912 170 7 0 chr6 93307248 93307536 -89107706 - AluJb SINE Alu -22 290 1 5541 127 23 9 chr6 93307536 93309053 -89106189 + L1PA15 LINE L1 4636 6165 0 1840 116 81 16 chr6 93309062 93309456 -89105786 - LTR56 LTR ERV1 -9 428 33 395 291 72 18 chr6 93309667 93309979 -89105263 - LTR16C LTR ERVL -10 481 127 1289 142 138 89 chr6 93314396 93314825 -89100417 + LTR7 LTR ERV1 1 450 0 203 291 0 0 chr6 93315830 93315885 -89099357 - MER91 DNA MER1_type 0 196 142 257 233 81 0 chr6 93316308 93316394 -89098848 - L1ME LINE L1 -253 5868 5776 306 0 0 0 chr6 93317121 93317155 -89098087 + (CAT)n Simple_repeat Simple_repeat 1 34 0 241 261 252 17 chr6 93318011 93318130 -89097112 + L2 LINE L2 3162 3308 -5 572 117 0 29 chr6 93318669 93318772 -89096470 - AluSp/q SINE Alu 0 313 214 1421 240 107 44 chr6 93319046 93319193 -89096049 - L1MD2 LINE L1 -252 6367 6231 1840 153 26 16 chr6 93319193 93319501 -89095741 - AluJb SINE Alu -1 311 1 1421 240 107 44 chr6 93319501 93319552 -89095690 - L1MD2 LINE L1 -388 6231 6185 2063 36 48 0 chr6 93319552 93319803 -89095439 - AluY SINE Alu -14 297 35 1421 240 107 44 chr6 93319803 93320108 -89095134 - L1MD2 LINE L1 -434 6185 5831 1265 80 0 0 chr6 93320162 93320313 -89094929 - AluSq/x SINE Alu -161 151 1 786 218 31 0 chr6 93320316 93320509 -89094733 - L1MD2 LINE L1 -632 5794 5596 396 195 0 0 chr6 93320505 93320582 -89094660 - L1MD2 LINE L1 -1566 4840 4764 * 2357 100 0 0 chr6 93320583 93320883 -89094359 - AluSg SINE Alu -9 301 2 2576 210 100 79 chr6 93320940 93321719 -89093523 - L1MD2 LINE L1 -3404 3002 2241 1787 143 14 21 chr6 93321719 93321998 -89093244 - AluJo SINE Alu -30 282 6 2576 210 100 79 chr6 93321998 93323261 -89091981 - L1MD2 LINE L1 -4165 2241 918 274 154 0 0 chr6 93323261 93323313 -89091929 - U5 snRNA snRNA -64 52 1 274 154 0 0 chr6 93323350 93323402 -89091840 - U5 snRNA snRNA -64 52 1 319 204 87 122 chr6 93323402 93323574 -89091668 - L1MD2 LINE L1 -5460 949 784 2157 134 0 13 chr6 93324099 93324406 -89090836 - AluSx SINE Alu -9 303 1 581 273 79 74 chr6 93324823 93325241 -89090001 + LTR16A LTR ERVL 1 435 -15 497 269 50 64 chr6 93325445 93325703 -89089539 + MLT1L LTR MaLR 335 615 0 211 53 26 26 chr6 93325839 93325877 -89089365 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 326 289 78 16 chr6 93326569 93326697 -89088545 + MIR3 SINE MIR 9 144 -64 344 341 31 8 chr6 93327333 93327462 -89087780 + L1MC4 LINE L1 7532 7663 -379 207 88 0 0 chr6 93327645 93327679 -89087563 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 30 0 0 chr6 93327764 93327797 -89087445 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr6 93327966 93327987 -89087255 + (A)n Simple_repeat Simple_repeat 1 21 0 284 263 12 12 chr6 93328014 93328094 -89087148 - MIR SINE MIR -96 166 87 264 30 0 0 chr6 93329206 93329239 -89086003 + (CA)n Simple_repeat Simple_repeat 1 33 0 1624 206 22 30 chr6 93330008 93330376 -89084866 - MLT1A1 LTR MaLR 0 365 1 425 250 21 0 chr6 93333010 93333106 -89082136 - MER5A DNA MER1_type -80 109 12 1852 176 3 3 chr6 93333213 93333552 -89081690 + AluJb SINE Alu 1 339 0 367 232 24 43 chr6 93333978 93334142 -89081100 + L1M4 LINE L1 3687 3847 -2299 1089 214 7 76 chr6 93334233 93334536 -89080706 - AluJb SINE Alu -30 282 1 22 0 0 0 chr6 93334536 93334558 -89080684 + AT_rich Low_complexity Low_complexity 1 22 0 5047 141 44 0 chr6 93334593 93335855 -89079387 + L1PA16 LINE L1 4842 6150 -16 28 29 0 0 chr6 93335858 93335893 -89079349 + AT_rich Low_complexity Low_complexity 1 35 0 1082 238 28 35 chr6 93335916 93336378 -89078864 + L1MB7 LINE L1 2025 2483 -3901 2076 135 0 3 chr6 93336394 93336705 -89078537 - AluSg SINE Alu 0 310 1 200 96 19 77 chr6 93338040 93338092 -89077150 + (TTTTA)n Simple_repeat Simple_repeat 1 49 0 2365 88 3 0 chr6 93338131 93338425 -89076817 + AluSq SINE Alu 1 295 -18 2367 129 19 12 chr6 93338823 93339241 -89076001 + L1MA2 LINE L1 5884 6304 0 1305 204 9 69 chr6 93339452 93339884 -89075358 + L1MB7 LINE L1 2866 3271 -3111 967 162 57 9 chr6 93339869 93340098 -89075144 + L1M2 LINE L1 5266 5505 -786 * 1159 177 84 4 chr6 93340094 93340483 -89074759 + L1MB7 LINE L1 5265 5698 -712 2706 194 33 8 chr6 93340484 93341088 -89074154 + L1MB7 LINE L1 5801 6419 -1 345 243 130 79 chr6 93341379 93341556 -89073686 + MIR SINE MIR 71 256 -6 3496 79 11 2 chr6 93341579 93342046 -89073196 + L1PA7 LINE L1 5684 6154 0 180 262 36 60 chr6 93342359 93342443 -89072799 - MIR SINE MIR -97 165 84 2914 102 25 37 chr6 93342706 93343352 -89071890 + LTR8A LTR ERV1 1 726 -1 6184 95 26 1 chr6 93343853 93345500 -89069742 - L1PA14 LINE L1 -1 6160 4488 2844 9 0 9 chr6 93345602 93345920 -89069322 + AluYb8 SINE Alu 1 315 -3 250 269 77 105 chr6 93345947 93346061 -89069181 + Charlie4 DNA MER1_type 508 624 -1337 1252 129 76 23 chr6 93346061 93346288 -89068954 - L1MA4 LINE L1 0 6300 6056 3971 89 7 4 chr6 93346288 93346840 -89068402 + MER41A LTR ERV1 1 554 0 1252 129 76 23 chr6 93346840 93346876 -89068366 - L1MA4 LINE L1 -244 6056 6023 250 269 77 105 chr6 93346876 93347370 -89067872 + Charlie4 DNA MER1_type 624 1099 -862 1382 127 23 0 chr6 93347392 93347612 -89067630 + MER41A LTR ERV1 330 554 0 4268 119 27 23 chr6 93347612 93348224 -89067018 - L1MC1 LINE L1 -276 6057 5440 3984 91 7 0 chr6 93348224 93348774 -89066468 + MER41A LTR ERV1 1 554 0 4268 119 27 23 chr6 93348774 93348936 -89066306 - L1MC1 LINE L1 -893 5440 5280 * 7284 36 4 0 chr6 93348905 93350502 -89064740 - L1PA4 LINE L1 -2 6153 4549 4358 231 25 43 chr6 93350486 93351838 -89063404 - L1M4 LINE L1 -812 5334 4010 * 1980 116 0 4 chr6 93351838 93352114 -89063128 - AluSq SINE Alu -15 298 24 4358 231 25 43 chr6 93352114 93352247 -89062995 - L1M4 LINE L1 -2136 4010 3876 519 217 26 26 chr6 93352304 93352456 -89062786 - L1M4 LINE L1 -2258 3888 3737 355 230 53 33 chr6 93352482 93352634 -89062608 - Charlie4 DNA MER1_type -573 1388 1234 1309 242 26 92 chr6 93352707 93353057 -89062185 - LTR26E LTR ERV1 -27 592 194 2229 101 34 0 chr6 93353057 93353353 -89061889 + AluSx SINE Alu 1 306 -6 1309 242 26 92 chr6 93353353 93353493 -89061749 - LTR26E LTR ERV1 -425 194 46 1823 199 31 8 chr6 93353506 93353858 -89061384 - MSTB LTR MaLR -66 360 1 1091 157 6 0 chr6 93353923 93354089 -89061153 - AluSg SINE Alu -9 301 135 501 104 0 0 chr6 93354089 93354156 -89061086 - AluSg SINE Alu -243 67 1 2280 110 0 7 chr6 93354161 93354460 -89060782 - AluSq SINE Alu -16 297 1 1111 239 50 58 chr6 93354579 93355165 -89060077 + Charlie4 DNA MER1_type 1381 1961 0 317 198 27 72 chr6 93355457 93355568 -89059674 - L1MC5 LINE L1 -1187 6774 6669 2362 110 0 0 chr6 93355571 93355881 -89059361 - AluSx SINE Alu -2 310 1 1131 121 18 11 chr6 93357010 93357290 -89057952 + L1MA8 LINE L1 5701 6161 -130 218 289 26 79 chr6 93357374 93357488 -89057754 + MIR SINE MIR 49 156 -106 2333 94 0 7 chr6 93357541 93357850 -89057392 - AluSq SINE Alu -6 307 1 1614 182 193 42 chr6 93358036 93358636 -89056606 + MER63D DNA MER1_type 1 691 -370 572 212 0 0 chr6 93359362 93359475 -89055767 + L1MD3 LINE L1 7479 7591 -404 240 200 0 18 chr6 93359575 93359630 -89055612 - MER21B LTR ERV1 -797 66 13 295 299 65 52 chr6 93359860 93360014 -89055228 - MIR3 SINE MIR -21 187 32 312 273 58 0 chr6 93360068 93360189 -89055053 + L1M4 LINE L1 5106 5233 -913 227 289 36 18 chr6 93360235 93360401 -89054841 + L1P5 LINE L1 5296 5464 -687 361 292 58 0 chr6 93361434 93361554 -89053688 - MIR SINE MIR -60 202 76 257 27 54 0 chr6 93363514 93363551 -89051691 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 389 228 9 35 chr6 93363629 93363743 -89051499 - MIR SINE MIR -87 175 65 203 0 0 36 chr6 93365482 93365510 -89049732 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 830 217 77 0 chr6 93365510 93365731 -89049511 - L1M4 LINE L1 -1026 5120 4883 2206 38 0 79 chr6 93466160 93466478 -88948764 + AluY SINE Alu 1 293 -18 22 35 0 0 chr6 93467337 93467366 -88947876 + GC_rich Low_complexity Low_complexity 1 29 0 286 271 159 46 chr6 93468187 93468338 -88946904 - MIR SINE MIR -71 191 24 351 242 172 16 chr6 93468528 93468714 -88946528 - L1ME LINE L1 -424 5697 5483 481 172 94 13 chr6 93469659 93469930 -88945312 + MER33 DNA MER1_type 1 324 0 258 290 84 61 chr6 93470101 93470232 -88945010 - L2 LINE L2 -1 3312 3179 1053 108 70 70 chr6 93472754 93472813 -88942429 + AluJb SINE Alu 86 144 -168 2145 137 0 0 chr6 93472813 93473113 -88942129 + AluSx SINE Alu 1 300 -12 1053 108 70 70 chr6 93473113 93473266 -88941976 + AluJb SINE Alu 143 298 -14 2062 132 10 3 chr6 93473343 93473653 -88941589 + AluSx SINE Alu 1 312 0 1765 94 34 23 chr6 93474503 93474768 -88940474 + AluSx SINE Alu 1 268 -44 243 0 0 0 chr6 93475511 93475538 -88939704 + (A)n Simple_repeat Simple_repeat 1 27 0 186 179 103 0 chr6 93475593 93475632 -88939610 - MIR SINE MIR -64 144 102 205 261 0 0 chr6 93475952 93475998 -88939244 + (TATG)n Simple_repeat Simple_repeat 1 46 0 2034 108 62 3 chr6 93476040 93476328 -88938914 + AluSx SINE Alu 1 305 -7 1548 178 30 17 chr6 93476775 93476908 -88938334 + AluJb SINE Alu 1 131 -181 2159 110 0 7 chr6 93476908 93477207 -88938035 + AluSq SINE Alu 1 297 -16 1548 178 30 17 chr6 93477207 93477371 -88937871 + AluJb SINE Alu 131 302 -10 631 200 14 48 chr6 93478456 93478601 -88936641 + FRAM SINE Alu 2 141 -35 562 111 32 95 chr6 93478599 93478725 -88936517 - AluSg/x SINE Alu -10 300 183 * 907 83 8 53 chr6 93478918 93479051 -88936191 - AluSq/x SINE Alu -185 127 1 24 0 0 0 chr6 93479063 93479087 -88936155 + AT_rich Low_complexity Low_complexity 1 24 0 215 240 53 27 chr6 93480061 93480136 -88935106 - L2 LINE L2 -94 3219 3143 21 0 0 0 chr6 93482255 93482276 -88932966 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 93486797 93486819 -88928423 + AT_rich Low_complexity Low_complexity 1 22 0 453 136 0 0 chr6 93489518 93489584 -88925658 + AluS SINE Alu 226 291 -21 1985 111 6 74 chr6 93490089 93490413 -88924829 - AluSx SINE Alu -10 302 1 865 196 73 5 chr6 93490562 93490766 -88924476 + MER20 DNA MER1_type 2 219 0 587 251 82 22 chr6 93490766 93490949 -88924293 + MIR SINE MIR 9 202 -60 210 286 152 27 chr6 93491380 93491492 -88923750 - MIR3 SINE MIR -45 163 38 1901 119 20 26 chr6 93492024 93492327 -88922915 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr6 93492534 93492564 -88922678 + AT_rich Low_complexity Low_complexity 1 30 0 305 169 17 0 chr6 93493312 93493371 -88921871 - L1MC/D LINE L1 -665 5668 5609 * 3830 169 117 18 chr6 93493366 93493731 -88921511 + L1MC1 LINE L1 5329 5656 -677 2018 141 3 0 chr6 93493731 93494029 -88921213 + AluSx SINE Alu 2 300 -12 3830 169 117 18 chr6 93494029 93494571 -88920671 + L1MC1 LINE L1 5656 6326 -7 1442 180 57 37 chr6 93495101 93495401 -88919841 + AluJo SINE Alu 5 310 -2 1794 120 20 40 chr6 93495855 93496155 -88919087 + AluSg SINE Alu 1 294 -16 2024 142 3 0 chr6 93497047 93497349 -88917893 + AluSx SINE Alu 1 303 -9 207 0 0 0 chr6 93499163 93499186 -88916056 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2016 121 0 4 chr6 93499190 93499470 -88915772 - AluSc SINE Alu -30 279 1 1548 145 0 44 chr6 93499990 93500307 -88914935 - AluSg SINE Alu -7 303 1 2116 115 20 3 chr6 93502013 93502318 -88912924 - AluSq SINE Alu -3 310 1 23 0 0 0 chr6 93502324 93502347 -88912895 + AT_rich Low_complexity Low_complexity 1 23 0 2119 140 0 9 chr6 93502678 93502993 -88912249 - AluSx SINE Alu 0 312 1 1790 169 30 0 chr6 93503297 93503592 -88911650 - AluSx SINE Alu -7 305 2 541 182 0 0 chr6 93503592 93503680 -88911562 - AluJ/FLAM SINE Alu -221 91 4 558 205 90 0 chr6 93503908 93504030 -88911212 - MER2 DNA MER2_type -212 133 1 225 173 39 0 chr6 93504559 93504611 -88910631 + Alu SINE Alu 1 54 -247 1454 138 28 0 chr6 93504711 93504929 -88910313 - AluSx SINE Alu -88 224 1 576 96 60 0 chr6 93504943 93505069 -88910173 - AluY SINE Alu 0 326 196 1276 78 0 24 chr6 93505265 93505431 -88909811 - AluY SINE Alu -149 162 1 1492 189 29 4 chr6 93505461 93505742 -88909500 - AluJo SINE Alu -24 288 1 301 299 56 56 chr6 93506746 93506890 -88908352 + L2 LINE L2 2515 2658 -656 2091 119 14 0 chr6 93507046 93507341 -88907901 - AluSx SINE Alu -13 299 1 185 333 0 20 chr6 93507595 93507646 -88907596 + L2 LINE L2 3246 3295 -18 307 188 51 68 chr6 93508174 93508291 -88906951 + L1MC2 LINE L1 6204 6318 -26 2195 100 7 10 chr6 93508320 93508620 -88906622 - AluSp SINE Alu -14 299 1 1897 150 27 0 chr6 93509319 93509612 -88905630 + AluSq SINE Alu 1 301 -12 278 292 54 31 chr6 93509687 93509817 -88905425 - L2 LINE L2 -704 2610 2478 1107 273 139 2 chr6 93509884 93510152 -88905090 - MLT2E LTR ERVL 0 628 398 1692 141 85 7 chr6 93510152 93510435 -88904807 + AluJb SINE Alu 2 306 -6 1107 273 139 2 chr6 93510435 93510576 -88904666 - MLT2E LTR ERVL -230 398 163 688 194 86 27 chr6 93510632 93510695 -88904547 - MER3 DNA MER1_type -6 203 145 2294 90 3 0 chr6 93510695 93510996 -88904246 + AluY SINE Alu 1 302 -9 688 194 86 27 chr6 93510996 93511118 -88904124 - MER3 DNA MER1_type -64 145 7 321 295 62 36 chr6 93511468 93511885 -88903357 - L1ME4a LINE L1 -4 6117 5690 266 264 0 0 chr6 93512423 93512495 -88902747 + AluS SINE Alu 1 72 -227 391 145 0 0 chr6 93512601 93512670 -88902572 - MER41A LTR ERV1 -90 464 396 * 8468 127 53 11 chr6 93512665 93513543 -88901699 + Tigger2 DNA MER2_type 1164 2129 -589 1759 155 48 10 chr6 93513543 93513834 -88901408 + AluJb SINE Alu 1 302 -10 8468 127 53 11 chr6 93513834 93514408 -88900834 + Tigger2 DNA MER2_type 2129 2677 -41 2231 60 3 14 chr6 93514459 93514768 -88900474 - AluY SINE Alu 0 306 1 1447 178 57 14 chr6 93514771 93515052 -88900190 - AluSx SINE Alu -19 293 1 781 198 97 39 chr6 93515219 93515426 -88899816 + MER20 DNA MER1_type 1 219 0 2147 105 3 10 chr6 93516350 93516655 -88898587 + AluSx SINE Alu 1 303 -9 402 199 90 104 chr6 93517970 93518181 -88897061 + MIR SINE MIR 53 260 -2 2132 108 3 10 chr6 93519620 93519926 -88895316 - AluSx SINE Alu -8 304 1 225 304 62 62 chr6 93520145 93520306 -88894936 - L3 LINE CR1 -498 1079 919 1198 180 39 47 chr6 93521017 93521111 -88894131 + AluSx SINE Alu 43 136 -176 2234 102 3 0 chr6 93521111 93521404 -88893838 + AluSg SINE Alu 1 294 -16 1198 180 39 47 chr6 93521404 93521565 -88893677 + AluSx SINE Alu 136 296 -16 2471 60 3 3 chr6 93521649 93521950 -88893292 + AluY SINE Alu 1 301 -10 21 0 0 0 chr6 93521991 93522012 -88893230 + AT_rich Low_complexity Low_complexity 1 21 0 570 273 105 77 chr6 93522032 93522640 -88892602 + L2 LINE L2 2231 2855 -459 2142 82 3 14 chr6 93522674 93522968 -88892274 - AluSg SINE Alu -17 293 3 2242 106 0 0 chr6 93522973 93523274 -88891968 - AluSx SINE Alu -10 302 2 218 379 21 0 chr6 93523611 93523706 -88891536 - L3 LINE CR1 -1 1576 1480 2412 62 0 3 chr6 93523708 93523998 -88891244 - AluY SINE Alu -21 290 2 744 170 0 46 chr6 93524050 93524246 -88890996 + L1MC/D LINE L1 5152 5338 -816 2010 129 4 0 chr6 93524282 93524597 -88890645 - AluSx SINE Alu 0 317 2 2843 132 4 15 chr6 93524611 93524731 -88890511 + L1MC/D LINE L1 5321 5441 -903 3219 117 45 14 chr6 93524731 93525293 -88889949 + L1MA4 LINE L1 5718 6296 -4 2843 132 4 15 chr6 93525293 93525634 -88889608 + L1MC/D LINE L1 5441 5777 -567 25 65 0 0 chr6 93525634 93525680 -88889562 + AT_rich Low_complexity Low_complexity 1 46 0 297 309 21 21 chr6 93525868 93525965 -88889277 + MER5B DNA MER1_type 1 97 -81 1183 110 0 55 chr6 93525977 93526163 -88889079 + L1MC1 LINE L1 5793 5967 -366 2390 76 0 3 chr6 93526163 93526465 -88888777 + AluY SINE Alu 1 301 -10 1183 110 0 55 chr6 93526465 93526496 -88888746 + L1MC1 LINE L1 5967 5998 -335 839 155 0 28 chr6 93526624 93526766 -88888476 - AluSq/x SINE Alu -174 138 1 525 255 123 74 chr6 93526848 93527012 -88888230 - L1M4 LINE L1 -2588 3558 3404 1727 154 28 18 chr6 93527012 93527298 -88887944 + AluJb SINE Alu 1 289 -23 525 255 123 74 chr6 93527298 93527458 -88887784 - L1M4 LINE L1 -2742 3404 3218 234 240 87 10 chr6 93527459 93527563 -88887679 - L1MC5 LINE L1 -37 7924 7813 1087 156 46 132 chr6 93527598 93527716 -88887526 + AluJo SINE Alu 5 132 -170 1794 148 0 32 chr6 93527716 93527994 -88887248 - AluSx SINE Alu -18 294 26 1087 156 46 132 chr6 93527994 93528201 -88887041 + AluJo SINE Alu 132 302 0 301 236 119 85 chr6 93528215 93528397 -88886845 - L1MC5 LINE L1 -273 7688 7514 599 217 148 16 chr6 93528397 93528586 -88886656 - MER58C DNA MER1_type -1 214 1 301 236 119 85 chr6 93528586 93528780 -88886462 - L1MC5 LINE L1 -447 7514 7299 324 283 65 32 chr6 93528938 93529185 -88886057 - L1MC5 LINE L1 -740 7221 6967 253 225 123 0 chr6 93529179 93529317 -88885925 - L1M4 LINE L1 -2904 3242 3088 * 5893 56 21 1 chr6 93529379 93530171 -88885071 - L1PA7 LINE L1 -1 6153 5346 1890 134 3 7 chr6 93530326 93530633 -88884609 - AluSq SINE Alu -7 306 1 1934 98 22 4 chr6 93530754 93531063 -88884179 - AluSc SINE Alu 0 314 1 23 33 0 0 chr6 93531070 93531100 -88884142 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 93531274 93531302 -88883940 + AT_rich Low_complexity Low_complexity 1 28 0 805 200 13 0 chr6 93531302 93531452 -88883790 + FRAM SINE Alu 1 152 -24 336 333 11 37 chr6 93531612 93531801 -88883441 - L2 LINE L2 -248 3024 2841 324 216 82 41 chr6 93531877 93532048 -88883194 + MER112 DNA MER1_type 5 182 -78 261 328 47 0 chr6 93532062 93532126 -88883116 - MER91A DNA MER1_type -8 188 122 779 190 39 49 chr6 93532232 93532344 -88882898 - MER115 DNA AcHobo -7 686 575 2031 121 14 3 chr6 93532344 93532641 -88882601 + AluSx SINE Alu 1 300 -12 779 190 39 49 chr6 93532641 93532733 -88882509 - MER115 DNA AcHobo -118 575 484 1650 202 97 3 chr6 93532839 93533201 -88882041 - MLT1C LTR MaLR -71 396 1 200 362 103 38 chr6 93533228 93533487 -88881755 - L2 LINE L2 -1738 1576 1275 2328 117 3 0 chr6 93533487 93533796 -88881446 + AluSg SINE Alu 1 310 0 200 362 103 38 chr6 93533796 93533981 -88881261 - L2 LINE L2 -2039 1275 1103 1202 186 78 96 chr6 93533984 93534430 -88880812 - LTR8A LTR ERV1 0 727 290 941 181 61 132 chr6 93534478 93534788 -88880454 - LTR8A LTR ERV1 -439 288 1 1084 179 81 29 chr6 93534915 93535006 -88880236 - Charlie4a DNA MER1_type -1453 508 423 1919 171 58 0 chr6 93535006 93535351 -88879891 - MER47A DNA MER2_type -1 365 1 1084 179 81 29 chr6 93535351 93535566 -88879676 - Charlie4a DNA MER1_type -1538 423 186 360 141 0 115 chr6 93535568 93535646 -88879596 + MER67C LTR ERV1 268 336 -374 435 246 16 75 chr6 93536475 93536727 -88878515 - L1MEd LINE L1 -5183 936 700 3861 96 17 66 chr6 93536748 93537000 -88878242 - L1MA5A LINE L1 -7 6290 6027 2412 87 0 3 chr6 93537000 93537299 -88877943 - AluSp SINE Alu -15 298 1 3861 96 17 66 chr6 93537299 93537403 -88877839 - L1MA5A LINE L1 -270 6027 5919 2395 100 0 0 chr6 93537403 93537704 -88877538 - AluSq SINE Alu -11 302 2 3861 96 17 66 chr6 93537704 93537887 -88877355 - L1MA5A LINE L1 -378 5919 5785 1807 171 0 42 chr6 93537887 93538196 -88877046 - AluJo SINE Alu -16 296 1 3861 96 17 66 chr6 93538196 93538303 -88876939 - L1MA5A LINE L1 -512 5785 5674 865 211 29 0 chr6 93538309 93538480 -88876762 - Charlie4a DNA MER1_type -311 197 22 363 267 166 91 chr6 93538537 93538791 -88876451 - L2 LINE L2 -2568 746 513 2186 108 0 45 chr6 93538791 93538927 -88876315 + AluSx SINE Alu 1 142 -170 2174 109 3 0 chr6 93538927 93539241 -88876001 + AluSx SINE Alu 1 315 0 2186 108 0 45 chr6 93539241 93539417 -88875825 + AluSx SINE Alu 142 300 -12 363 267 166 91 chr6 93539417 93539637 -88875605 - L2 LINE L2 -2801 513 236 305 115 0 4 chr6 93539892 93540102 -88875140 + AluSx SINE Alu 1 301 0 2457 98 0 0 chr6 93540106 93540413 -88874829 + AluSc SINE Alu 3 309 0 615 221 8 0 chr6 93540491 93540618 -88874624 + FLAM_A SINE Alu 1 128 -5 294 182 273 28 chr6 93540633 93540809 -88874433 + L1ME4a LINE L1 5868 6086 -35 23 68 0 0 chr6 93540941 93540985 -88874257 + AT_rich Low_complexity Low_complexity 1 44 0 1590 189 31 7 chr6 93541071 93541362 -88873880 - AluJb SINE Alu -14 298 1 2145 109 7 7 chr6 93541584 93541877 -88873365 - AluSq SINE Alu -20 293 1 386 151 141 136 chr6 93541879 93542041 -88873201 - MER2 DNA MER2_type -7 338 173 1940 137 9 40 chr6 93542041 93542229 -88873013 - AluSx SINE Alu 0 312 137 1914 132 49 0 chr6 93542229 93542516 -88872726 - AluSg SINE Alu -9 301 1 1940 137 9 40 chr6 93542516 93542649 -88872593 - AluSx SINE Alu -175 137 1 386 151 141 136 chr6 93542649 93542685 -88872557 - MER2 DNA MER2_type -172 173 139 836 203 60 11 chr6 93542700 93542882 -88872360 + MER7A DNA MER2_type 1 189 -157 180 152 0 0 chr6 93542884 93542917 -88872325 + (TA)n Simple_repeat Simple_repeat 2 34 0 379 96 0 0 chr6 93542918 93542970 -88872272 - Tigger2 DNA MER2_type -1682 1036 985 810 165 0 67 chr6 93542991 93543155 -88872087 + AluJo SINE Alu 31 183 -129 419 203 0 0 chr6 93543155 93543229 -88872013 - AluJ/FLAM SINE Alu -237 75 2 1712 115 0 12 chr6 93543248 93543500 -88871742 - AluSx SINE Alu -1 311 63 2014 138 0 25 chr6 93543665 93543985 -88871257 - AluSx SINE Alu 0 312 1 2714 196 113 82 chr6 93544270 93545318 -88869924 - L1MC5 LINE L1 -51 7910 6844 2112 112 17 0 chr6 93545318 93545605 -88869637 - AluSx SINE Alu -20 292 1 2714 196 113 82 chr6 93545605 93545774 -88869468 - L1MC5 LINE L1 -1117 6844 6682 238 267 93 12 chr6 93545809 93545895 -88869347 + L2 LINE L2 2745 2837 -477 583 266 56 40 chr6 93546094 93546346 -88868896 + L2 LINE L2 3058 3313 0 354 247 0 0 chr6 93546548 93546641 -88868601 + CT-rich Low_complexity Low_complexity 2 94 0 1659 94 0 5 chr6 93546678 93546891 -88868351 - AluSx SINE Alu -100 212 1 2379 100 0 0 chr6 93547119 93547419 -88867823 - AluSx SINE Alu -7 305 6 1158 72 0 0 chr6 93547519 93547658 -88867584 + AluSc SINE Alu 157 295 -14 615 167 0 53 chr6 93547704 93547818 -88867424 + FLAM_A SINE Alu 25 132 -10 1491 189 14 25 chr6 93547825 93548110 -88867132 + AluJo SINE Alu 6 287 -25 1487 168 67 11 chr6 93548278 93548563 -88866679 - AluJo SINE Alu -11 301 1 710 238 126 14 chr6 93549789 93550012 -88865230 + L2 LINE L2 2111 2358 -956 551 229 14 0 chr6 93550019 93550159 -88865083 + L1MA10 LINE L1 6180 6321 -13 1076 203 175 0 chr6 93551076 93551327 -88863915 - AluJo SINE Alu -7 295 1 23 33 0 0 chr6 93554571 93554601 -88860641 + GC_rich Low_complexity Low_complexity 1 30 0 337 242 1 0 chr6 93555120 93555195 -88860047 - MIR SINE MIR -53 155 79 197 271 0 0 chr6 93555539 93555598 -88859644 + L2 LINE L2 3214 3272 0 395 179 52 19 chr6 93555808 93555906 -88859336 + AluJ/FLAM SINE Alu 1 76 -226 21 0 0 0 chr6 93555920 93555941 -88859301 + AT_rich Low_complexity Low_complexity 1 21 0 939 176 50 11 chr6 93556170 93556352 -88858890 - AluJb SINE Alu -20 292 104 200 352 40 16 chr6 93556400 93556525 -88858717 + MER5B DNA MER1_type 1 128 -50 954 166 55 114 chr6 93556541 93556616 -88858626 - MER33 DNA MER1_type -2261 324 246 198 0 0 0 chr6 93556616 93556638 -88858604 + (TA)n Simple_repeat Simple_repeat 2 23 0 2409 66 13 20 chr6 93556638 93556943 -88858299 - AluY SINE Alu -8 303 1 954 166 55 114 chr6 93556943 93556975 -88858267 - MER33 DNA MER1_type -2338 247 215 1442 144 107 67 chr6 93556975 93557273 -88857969 + AluJb SINE Alu 1 310 -2 954 166 55 114 chr6 93557273 93557445 -88857797 - MER33 DNA MER1_type -2370 215 65 3125 127 2 10 chr6 93557445 93557927 -88857315 - L1PA14 LINE L1 -3 6158 5681 954 166 55 114 chr6 93557927 93557995 -88857247 - MER33 DNA MER1_type -2520 65 1 1720 161 15 4 chr6 93558118 93558385 -88856857 - AluJo SINE Alu -32 280 11 297 271 113 26 chr6 93558964 93559115 -88856127 - MIR SINE MIR -9 253 90 303 177 0 0 chr6 93559196 93559258 -88855984 + GA-rich Low_complexity Low_complexity 2 63 0 1233 267 212 9 chr6 93559938 93560630 -88854612 - L2 LINE L2 -1003 2311 1479 319 313 9 9 chr6 93561601 93561716 -88853526 + LTR33-int LTR ERVL 455 569 -4454 2011 122 35 0 chr6 93562266 93562553 -88852689 + AluSp SINE Alu 1 297 -16 2111 119 3 0 chr6 93562870 93563156 -88852086 - AluSx SINE Alu -25 287 1 376 256 13 0 chr6 93563192 93563270 -88851972 + LTR33-int LTR ERVL 568 646 -4377 2245 110 3 0 chr6 93563288 93563579 -88851663 - AluSx SINE Alu -20 292 1 4004 305 60 35 chr6 93563696 93565498 -88849744 + LTR33-int LTR ERVL 858 2704 -2319 1760 300 22 20 chr6 93565570 93565617 -88849625 + LTR33-int LTR ERVL 3019 3064 -1959 938 166 7 0 chr6 93565617 93565768 -88849474 + FRAM SINE Alu 1 152 -14 1760 300 22 20 chr6 93565768 93566227 -88849015 + LTR33-int LTR ERVL 3064 3526 -1497 280 351 12 0 chr6 93566504 93566520 -88848722 + LTR33-int LTR ERVL 4537 4551 -472 288 361 15 0 chr6 93566520 93566650 -88848592 + MER89-int LTR ERV1 6280 6411 -390 280 351 12 0 chr6 93566650 93566669 -88848573 + LTR33-int LTR ERVL 4551 4703 -320 1292 316 103 30 chr6 93567527 93568452 -88846790 - L2 LINE L2 -1878 1436 445 360 289 41 0 chr6 93568468 93568589 -88846653 - L2 LINE L2 -957 2357 2232 226 236 38 85 chr6 93568902 93569008 -88846234 + MLT1L LTR MaLR 345 445 -170 693 307 0 0 chr6 93569316 93569492 -88845750 + LTR33 LTR ERVL 1 176 -345 268 214 214 11 chr6 93569665 93569754 -88845488 + LTR33 LTR ERVL 413 519 -2 41802 60 11 1 chr6 93570485 93576571 -88838671 - L1PA5 LINE L1 0 6154 13 2182 136 0 0 chr6 93576715 93577023 -88838219 - AluY SINE Alu -3 308 1 723 168 0 0 chr6 93577393 93577506 -88837736 + FRAM SINE Alu 1 112 -64 236 291 84 6 chr6 93577558 93577737 -88837505 - L1MC5 LINE L1 -271 7690 7498 459 145 0 0 chr6 93577886 93577969 -88837273 + (TCCC)n Simple_repeat Simple_repeat 2 84 0 1843 159 3 14 chr6 93577969 93578259 -88836983 - AluJb SINE Alu -25 287 1 2350 95 3 0 chr6 93578308 93578602 -88836640 + AluSc SINE Alu 1 295 -14 236 149 85 0 chr6 93578631 93578678 -88836564 + L1MC4 LINE L1 7860 7910 -132 285 29 0 0 chr6 93578805 93578839 -88836403 + (CA)n Simple_repeat Simple_repeat 2 35 0 227 211 0 0 chr6 93578842 93578880 -88836362 + MLT2D LTR ERVL 377 414 0 2054 135 91 39 chr6 93579541 93579878 -88835364 + MSTA LTR MaLR 1 364 -64 2191 118 0 25 chr6 93579878 93580193 -88835049 + AluSx SINE Alu 1 307 -5 2054 135 91 39 chr6 93580193 93580262 -88834980 + MSTA LTR MaLR 364 428 0 579 262 55 0 chr6 93580466 93580649 -88834593 - L2 LINE L2 -19 3294 3102 433 167 14 0 chr6 93580841 93580913 -88834329 + AluJ/FLAM SINE Alu 2 74 -238 7194 170 88 52 chr6 93580913 93582531 -88832711 - MER52A LTR ERV1 0 1755 1 349 125 0 0 chr6 93582531 93582634 -88832608 + FLAM_A SINE Alu 70 172 0 1859 122 93 0 chr6 93582669 93582939 -88832303 - AluSx SINE Alu -17 295 1 248 333 0 0 chr6 93582945 93583032 -88832210 - L2 LINE L2 -528 2786 2700 22 35 0 0 chr6 93583033 93583062 -88832180 + AT_rich Low_complexity Low_complexity 1 29 0 610 145 8 60 chr6 93583228 93583256 -88831986 + MLT1A1 LTR MaLR 1 29 -336 2862 61 3 22 chr6 93583256 93583618 -88831624 - THE1A LTR MaLR 0 355 1 610 145 8 60 chr6 93583618 93583706 -88831536 + MLT1A1 LTR MaLR 29 111 -254 306 260 32 49 chr6 93583715 93583838 -88831404 - L1MC5 LINE L1 -465 7496 7376 2244 119 0 0 chr6 93583839 93584134 -88831108 - AluSx SINE Alu -17 295 1 1677 162 10 34 chr6 93584140 93584437 -88830805 - AluSx SINE Alu -22 290 1 6932 60 4 9 chr6 93584696 93586368 -88828874 - L1PA7 LINE L1 -1 6153 4485 1137 232 91 46 chr6 93586419 93586958 -88828284 - L1MC5 LINE L1 -766 7195 6633 240 35 0 0 chr6 93586967 93586996 -88828246 + (CA)n Simple_repeat Simple_repeat 2 30 0 1111 158 110 76 chr6 93586996 93587313 -88827929 + MLT1B LTR MaLR 1 328 -62 944 128 0 0 chr6 93587313 93587438 -88827804 - FLAM_C SINE Alu -18 125 1 420 141 0 0 chr6 93587442 93587513 -88827729 + MLT1B LTR MaLR 320 390 0 373 327 0 0 chr6 93588006 93588165 -88827077 - HAL1b LINE L1 -713 635 477 760 212 0 0 chr6 93588213 93588364 -88826878 + FRAM SINE Alu 20 170 -6 633 185 19 148 chr6 93588488 93588610 -88826632 + MER57-int LTR ERV1 555 625 -6912 1313 161 210 0 chr6 93588610 93588853 -88826389 + AluJo SINE Alu 1 294 -8 633 185 19 148 chr6 93588853 93589000 -88826242 + MER57-int LTR ERV1 625 789 -6748 2491 61 0 0 chr6 93589011 93589321 -88825921 + AluY SINE Alu 1 310 -1 521 200 0 0 chr6 93589331 93589426 -88825816 + AluJ/FLAM SINE Alu 1 95 -217 1359 139 35 4 chr6 93589734 93590170 -88825072 - LTR54 LTR ERV1 0 510 1 211 292 94 21 chr6 93590210 93590306 -88824936 - MIR SINE MIR -145 117 15 207 0 0 0 chr6 93590381 93590404 -88824838 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 622 12 0 12 chr6 93590404 93590479 -88824763 - L1PA3 LINE L1 -6 6149 6076 216 387 0 0 chr6 93590479 93590554 -88824688 - MER5A DNA MER1_type -64 125 51 2864 112 31 11 chr6 93591506 93591962 -88823280 - MER4C LTR ERV1 0 465 1 3479 141 29 40 chr6 93591972 93592688 -88822554 - MER4C-int LTR ERV1 -2 6596 5889 1009 228 0 9 chr6 93592913 93593124 -88822118 - AluSc SINE Alu -14 295 87 1290 199 20 68 chr6 93593124 93593420 -88821822 - AluJo SINE Alu -8 304 23 497 166 11 107 chr6 93593421 93593499 -88821743 + LTR49-int LTR ERV1 4023 4107 -2491 2401 90 0 7 chr6 93593499 93593798 -88821444 - AluSq SINE Alu -16 297 1 497 166 11 107 chr6 93593798 93593882 -88821360 + LTR49-int LTR ERV1 4107 4729 -1869 1390 138 5 0 chr6 93593894 93594097 -88821145 + AluSg/x SINE Alu 107 310 -2 1379 195 83 62 chr6 93594108 93594841 -88820401 + LTR49-int LTR ERV1 2814 4741 -1590 37 0 0 0 chr6 93594886 93594923 -88820319 + AT_rich Low_complexity Low_complexity 1 37 0 2115 109 3 20 chr6 93594924 93595217 -88820025 - AluSx SINE Alu -24 288 1 676 209 34 44 chr6 93595706 93595912 -88819330 + LTR49-int LTR ERV1 5439 5642 -1895 1956 177 3 3 chr6 93596122 93596433 -88818809 + AluJo SINE Alu 1 311 -1 2062 134 16 0 chr6 93596433 93596740 -88818502 + AluSx SINE Alu 1 312 0 291 215 203 0 chr6 93596796 93596875 -88818367 - MER5C DNA MER1_type -228 96 2 940 311 43 6 chr6 93596879 93597204 -88818038 - L2 LINE L2 -688 2626 2290 434 220 11 0 chr6 93597547 93597638 -88817604 + MLT1A2 LTR MaLR 4 95 -279 449 149 0 0 chr6 93597644 93597718 -88817524 - MLT1A2 LTR MaLR -7 367 294 336 102 0 0 chr6 93597850 93597899 -88817343 + (GA)n Simple_repeat Simple_repeat 1 49 0 736 241 6 0 chr6 93597899 93598069 -88817173 + MLT1A2 LTR MaLR 204 374 0 468 249 42 24 chr6 93598069 93598234 -88817008 - L1MC4a LINE L1 -1903 5905 5738 1097 177 146 91 chr6 93598362 93598401 -88816841 - MER31A LTR ERV1 -9 476 441 2047 141 10 3 chr6 93598401 93598698 -88816544 + AluSx SINE Alu 1 299 -13 1097 177 146 91 chr6 93598698 93599109 -88816133 - MER31A LTR ERV1 -44 441 1 963 283 44 44 chr6 93599186 93599546 -88815696 - L2 LINE L2 -3 3310 2951 5486 104 14 4 chr6 93600677 93601036 -88814206 - L1PB1 LINE L1 -3 6148 5794 369 0 0 0 chr6 93601036 93601077 -88814165 + (TG)n Simple_repeat Simple_repeat 1 41 0 5486 104 14 4 chr6 93601077 93602501 -88812741 - L1PB1 LINE L1 -357 5794 4392 12685 161 54 61 chr6 93602620 93602952 -88812290 - MER4-int LTR ERV1 -753 5845 5512 279 0 0 0 chr6 93602952 93602983 -88812259 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 12685 161 54 61 chr6 93602983 93604081 -88811161 - MER4-int LTR ERV1 -1086 5512 4409 2314 92 7 0 chr6 93604081 93604373 -88810869 - AluSq SINE Alu -19 294 1 12685 161 54 61 chr6 93604373 93604401 -88810841 - MER4-int LTR ERV1 -2189 4409 4382 1829 127 12 73 chr6 93604401 93604731 -88810511 - AluJb SINE Alu -2 310 1 12685 161 54 61 chr6 93604731 93605658 -88809584 - MER4-int LTR ERV1 -2216 4382 3451 1789 164 7 3 chr6 93605658 93605951 -88809291 + AluJb SINE Alu 1 294 -18 12685 161 54 61 chr6 93605951 93607039 -88808203 - MER4-int LTR ERV1 -3147 3451 2358 1980 131 0 3 chr6 93607039 93607351 -88807891 - AluSx SINE Alu 0 311 1 12685 161 54 61 chr6 93607351 93608097 -88807145 - MER4-int LTR ERV1 -4240 2358 1341 2344 128 0 0 chr6 93608097 93608409 -88806833 + AluSx SINE Alu 1 312 0 12685 161 54 61 chr6 93608409 93608777 -88806465 - MER4-int LTR ERV1 -5257 1341 972 227 186 0 17 chr6 93608777 93608836 -88806406 + (TA)n Simple_repeat Simple_repeat 2 59 0 33 0 0 0 chr6 93608849 93608882 -88806360 + AT_rich Low_complexity Low_complexity 1 33 0 882 20 0 0 chr6 93608882 93608983 -88806259 - L1PA5 LINE L1 -8 6146 6046 5229 99 12 15 chr6 93609016 93609377 -88805865 - L1PB1 LINE L1 0 6151 5791 324 0 0 0 chr6 93609377 93609413 -88805829 + (TG)n Simple_repeat Simple_repeat 2 37 0 5229 99 12 15 chr6 93609413 93609860 -88805382 - L1PB1 LINE L1 -360 5791 5345 597 180 10 0 chr6 93609860 93609960 -88805282 + FLAM_C SINE Alu 21 121 -22 2417 130 60 11 chr6 93609962 93610611 -88804631 - MER4C-int LTR ERV1 -5807 791 3 990 141 5 32 chr6 93610616 93610801 -88804441 - MER4C LTR ERV1 0 465 286 214 255 0 0 chr6 93611732 93611779 -88803463 + GA-rich Low_complexity Low_complexity 1 47 0 2028 137 18 0 chr6 93611848 93612133 -88803109 + AluSx SINE Alu 1 290 -22 328 43 0 0 chr6 93612196 93612242 -88803000 - L1P LINE L1 -4007 2139 2094 589 12 25 0 chr6 93612242 93612323 -88802919 + L1PA2 LINE L1 5843 5925 -230 22 0 0 0 chr6 93612501 93612523 -88802719 + AT_rich Low_complexity Low_complexity 1 22 0 2295 91 0 0 chr6 93612726 93613012 -88802230 - AluSq SINE Alu -27 286 1 2975 73 52 0 chr6 93613045 93613485 -88801757 - L1MA1 LINE L1 0 6302 5840 861 249 86 92 chr6 93613485 93614436 -88800806 - MER52A LTR ERV1 0 1755 667 508 31 0 0 chr6 93614445 93614509 -88800733 - L1MA2 LINE L1 -461 5843 5780 689 183 0 0 chr6 93614609 93614740 -88800502 - L1 LINE L1 -2011 4135 4005 1973 149 4 0 chr6 93614740 93615021 -88800221 - AluSx SINE Alu -30 282 1 1719 161 186 0 chr6 93615079 93615440 -88799802 + MSTA LTR MaLR 1 428 0 9401 140 10 35 chr6 93615442 93617061 -88798181 + MSTA-int LTR MaLR 3 1580 0 1088 178 232 10 chr6 93617061 93617354 -88797888 + MSTA LTR MaLR 1 358 -70 448 135 0 0 chr6 93617354 93617428 -88797814 + MLT2A2 LTR ERVL 380 453 0 1180 157 40 4 chr6 93617821 93618255 -88796987 - LTR54 LTR ERV1 0 510 1 1605 248 33 13 chr6 93618256 93618736 -88796506 - MER31-int LTR ERV1 -395 7142 6614 328 231 99 0 chr6 93618770 93618861 -88796381 - MER31-int LTR ERV1 -761 4110 4011 * 1741 176 48 6 chr6 93618857 93618980 -88796262 - MER31-int LTR ERV1 -529 4407 4291 1509 137 9 13 chr6 93618980 93619213 -88796029 - AluSp SINE Alu 0 313 82 1741 176 48 6 chr6 93619213 93619446 -88795796 - MER31-int LTR ERV1 -645 4291 4036 1252 152 62 35 chr6 93619440 93619729 -88795513 - MER31-int LTR ERV1 -1178 3758 3462 * 3532 44 2 16 chr6 93619738 93620188 -88795054 - L1PA6 LINE L1 -1 6153 5710 461 173 13 0 chr6 93620188 93620263 -88794979 - FRAM SINE Alu -83 93 18 351 152 45 106 chr6 93620269 93620464 -88794778 - MER31-int LTR ERV1 -1888 4058 3989 1493 219 178 27 chr6 93620533 93621163 -88794079 + MER50 LTR ERV1 10 734 0 520 219 25 19 chr6 93621182 93621342 -88793900 - MER31-int LTR ERV1 -2312 2624 2464 * 617 245 44 16 chr6 93621326 93621575 -88793667 - MER31-int LTR ERV1 -2550 2573 2318 1759 118 34 75 chr6 93621630 93621951 -88793291 + AluSx SINE Alu 5 312 0 360 232 9 18 chr6 93622104 93622216 -88793026 + MER4-int LTR ERV1 879 989 -4134 654 186 19 62 chr6 93622219 93622380 -88792862 + MER34C LTR ERV1 160 313 -272 508 225 76 105 chr6 93622382 93622922 -88792320 + MER4-int LTR ERV1 1135 2298 -3503 496 123 0 0 chr6 93623062 93623135 -88792107 + U4 snRNA snRNA 1 73 -72 21586 102 14 11 chr6 93623145 93626498 -88788744 + L1P LINE L1 11 3372 -2774 978 236 23 79 chr6 93626498 93626841 -88788401 + MER57A LTR ERV1 22 345 -58 400 128 26 13 chr6 93626821 93626899 -88788343 + LTR54 LTR ERV1 432 510 0 * 2029 146 3 0 chr6 93627657 93627952 -88787290 - AluSq SINE Alu -17 296 1 22 0 0 0 chr6 93627961 93627983 -88787259 + AT_rich Low_complexity Low_complexity 1 22 0 35556 41 4 1 chr6 93628796 93634194 -88781048 - L1PA3 LINE L1 -3 6152 739 4726 92 11 6 chr6 93634201 93634899 -88780343 - L1PB2 LINE L1 -3 6148 5447 831 243 48 45 chr6 93635004 93635338 -88779904 + MER90 LTR ERV1 1 335 -240 620 248 33 0 chr6 93635363 93635516 -88779726 + MER90 LTR ERV1 457 614 0 264 59 0 0 chr6 93635992 93636026 -88779216 + (TG)n Simple_repeat Simple_repeat 1 34 0 378 143 0 0 chr6 93636026 93636089 -88779153 + (GA)n Simple_repeat Simple_repeat 2 64 0 182 271 215 84 chr6 93636320 93636427 -88778815 + L2 LINE L2 3149 3269 -3 238 61 20 0 chr6 93637021 93637070 -88778172 - L1MD3 LINE L1 0 7995 7946 516 219 50 148 chr6 93637070 93637139 -88778103 - MLT1C LTR MaLR 0 467 393 1627 104 6 163 chr6 93637139 93637477 -88777765 + AluSg1 SINE Alu 1 285 -24 516 219 50 148 chr6 93637477 93637690 -88777552 - MLT1C LTR MaLR -74 393 213 615 363 47 32 chr6 93637693 93637952 -88777290 - MLT1A1 LTR MaLR 0 467 196 1776 198 34 0 chr6 93637952 93638301 -88776941 - MLT1A1 LTR MaLR -4 361 1 615 363 47 32 chr6 93638301 93638447 -88776795 - MLT1A1 LTR MaLR -271 196 54 1098 152 12 56 chr6 93638807 93639057 -88776185 - L1MD2 LINE L1 0 6359 6121 264 227 93 27 chr6 93639357 93639432 -88775810 + MIR SINE MIR 18 97 -165 22 35 0 0 chr6 93639651 93639680 -88775562 + AT_rich Low_complexity Low_complexity 1 29 0 232 323 105 67 chr6 93639786 93640176 -88775066 - L2 LINE L2 -1619 1695 1291 687 136 45 0 chr6 93640399 93640509 -88774733 + FLAM_C SINE Alu 14 128 -15 938 128 0 7 chr6 93640862 93641011 -88774231 + L1PA7 LINE L1 6007 6154 0 1020 105 0 0 chr6 93641101 93641314 -88773928 - L1M LINE L1 -745 5401 5214 5492 133 27 25 chr6 93641783 93643316 -88771926 - L1PB1 LINE L1 0 7570 6034 213 326 174 10 chr6 93643355 93643453 -88771789 - MER91A DNA MER1_type -50 146 33 736 156 8 0 chr6 93643462 93643590 -88771652 - MER50 LTR ERV1 -37 697 569 797 89 0 0 chr6 93643594 93643718 -88771524 - L1P LINE L1 -1721 4425 4302 5988 235 52 5 chr6 93643727 93645033 -88770209 - L1PA13 LINE L1 -5419 1368 1 19363 163 29 31 chr6 93645045 93645335 -88769907 - L1PB1 LINE L1 -1873 5692 5403 2223 113 0 3 chr6 93645335 93645637 -88769605 - AluSc SINE Alu -8 301 1 19363 163 29 31 chr6 93645637 93647542 -88767700 - L1PB1 LINE L1 -2162 5403 3497 1849 157 35 37 chr6 93647542 93647918 -88767324 - THE1C LTR MaLR 0 375 1 19363 163 29 31 chr6 93647918 93648091 -88767151 - L1PB1 LINE L1 -4068 3497 3325 2071 144 0 6 chr6 93648091 93648404 -88766838 + AluSx SINE Alu 1 311 -1 19363 163 29 31 chr6 93648404 93649377 -88765865 - L1PB1 LINE L1 -4240 3325 2352 585 121 35 69 chr6 93649377 93649493 -88765749 - HY1 scRNA scRNA 0 112 1 19363 163 29 31 chr6 93649493 93651828 -88763414 - L1PB1 LINE L1 -5213 2352 15 370 343 119 18 chr6 93651845 93651936 -88763306 + L2 LINE L2 1616 1696 -1618 180 0 0 0 chr6 93651936 93651956 -88763286 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 370 343 119 18 chr6 93651956 93652141 -88763101 + L2 LINE L2 1696 1920 -1394 551 248 7 7 chr6 93652148 93652297 -88762945 - Zaphod DNA AcHobo -4 4027 3879 1005 207 70 13 chr6 93652325 93652551 -88762691 - MER21B LTR ERV1 -14 849 611 308 280 13 0 chr6 93652551 93652626 -88762616 - MER2 DNA MER2_type 0 345 270 245 164 18 0 chr6 93652668 93652723 -88762519 - MER2 DNA MER2_type -135 210 155 483 148 0 0 chr6 93652784 93652865 -88762377 - MER2 DNA MER2_type -196 149 69 5447 61 8 1 chr6 93652865 93653519 -88761723 + SVA Other Other 712 1369 -17 216 0 0 0 chr6 93653523 93653547 -88761695 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 249 33 0 0 chr6 93653597 93653627 -88761615 + (A)n Simple_repeat Simple_repeat 1 30 0 293 233 0 0 chr6 93653647 93653707 -88761535 - MER8 DNA MER2_type -179 60 1 1479 209 124 6 chr6 93653712 93654042 -88761200 - MER21B LTR ERV1 -256 607 239 3846 82 6 0 chr6 93654042 93654567 -88760675 - L1PA6 LINE L1 0 6154 5627 34689 104 7 8 chr6 93654572 93659965 -88755277 - L1PA6 LINE L1 -743 5403 18 603 285 47 36 chr6 93659971 93660224 -88755018 - MER21B LTR ERV1 -607 256 1 424 262 8 48 chr6 93660224 93660345 -88754897 - MER115 DNA AcHobo -154 539 424 913 230 35 50 chr6 93660384 93660701 -88754541 + MLT1C LTR MaLR 6 317 -150 1998 173 18 18 chr6 93660701 93660982 -88754260 - MSTC LTR MaLR 0 428 145 1551 163 50 66 chr6 93660982 93661363 -88753879 + THE1C LTR MaLR 1 375 0 1998 173 18 18 chr6 93661363 93661469 -88753773 - MSTC LTR MaLR -282 146 41 1568 228 10 0 chr6 93661485 93661792 -88753450 - AluJb SINE Alu 0 312 3 265 200 0 0 chr6 93661792 93661847 -88753395 - MSTC LTR MaLR -373 55 1 833 182 0 7 chr6 93661847 93661995 -88753247 + MLT1C LTR MaLR 313 459 -8 1647 209 22 22 chr6 93662165 93662528 -88752714 - MLT1A1 LTR MaLR -2 363 1 2844 193 18 2 chr6 93662718 93663230 -88752012 + MLT2B1 LTR ERVL 1 520 0 549 266 79 39 chr6 93663241 93663444 -88751798 + L2 LINE L2 1921 2131 -1183 1942 160 0 31 chr6 93663482 93663800 -88751442 - AluSx SINE Alu -4 308 1 3123 128 35 13 chr6 93663824 93664313 -88750929 - MER41B LTR ERV1 -86 549 45 2015 134 161 11 chr6 93664313 93664685 -88750557 + MSTA LTR MaLR 1 428 0 3123 128 35 13 chr6 93664685 93664732 -88750510 - MER41B LTR ERV1 -590 45 1 1432 105 24 0 chr6 93664734 93664944 -88750298 - MER41B-int LTR ERV1 -3 5943 5729 501 122 67 11 chr6 93664940 93665030 -88750212 - MER41A-int LTR ERV1 -1175 6030 5936 * 668 186 42 78 chr6 93665016 93665039 -88750203 - MER41A-int LTR ERV1 -1662 5543 5521 3334 142 11 15 chr6 93665039 93665566 -88749676 + MER1A DNA MER1_type 3 527 0 668 186 42 78 chr6 93665566 93665709 -88749533 - MER41A-int LTR ERV1 -1684 5521 5383 401 207 12 0 chr6 93665724 93665806 -88749436 - MER41A-int LTR ERV1 -5863 83 1 881 156 7 0 chr6 93665806 93665960 -88749282 - MER41A LTR ERV1 0 554 400 1454 286 146 24 chr6 93665963 93666851 -88748391 + L2 LINE L2 2177 3188 -125 728 243 188 5 chr6 93668544 93668746 -88746496 + MIR SINE MIR 24 262 0 1009 219 92 77 chr6 93669745 93670224 -88745018 - MLT1D LTR MaLR -19 486 1 529 224 152 76 chr6 93670295 93670559 -88744683 - Charlie8 DNA MER1_type -2132 285 2 523 250 41 17 chr6 93671144 93671316 -88743926 + MER20B DNA MER1_type 2 177 -606 3256 174 10 10 chr6 93671383 93671988 -88743254 - L1PB4 LINE L1 -7 6149 5545 769 174 13 7 chr6 93672276 93672425 -88742817 + MLT1F1 LTR MaLR 418 567 0 226 206 27 14 chr6 93672428 93672501 -88742741 + LTR41 LTR ERVL 696 769 -4 22 56 0 0 chr6 93672503 93672539 -88742703 + AT_rich Low_complexity Low_complexity 1 36 0 221 316 13 0 chr6 93672786 93672862 -88742380 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 404 261 33 0 chr6 93673427 93673519 -88741723 - MIR SINE MIR -150 112 18 519 163 92 0 chr6 93673879 93673977 -88741265 + L1MC/D LINE L1 5624 5730 -2078 709 311 106 13 chr6 93673993 93674305 -88740937 + MLT1I LTR MaLR 7 347 -62 1631 186 7 7 chr6 93674857 93675147 -88740095 + AluJo SINE Alu 1 290 -22 390 91 0 0 chr6 93675439 93675494 -88739748 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 405 58 0 0 chr6 93676859 93676911 -88738331 + (TTCTCC)n Simple_repeat Simple_repeat 3 54 0 2408 87 0 0 chr6 93676913 93677224 -88738018 - AluY SINE Alu 0 311 1 1764 183 10 3 chr6 93677279 93677569 -88737673 + AluJb SINE Alu 5 296 -16 1721 147 67 64 chr6 93678603 93678977 -88736265 - THE1C LTR MaLR 0 375 1 5697 128 71 36 chr6 93678977 93679018 -88736224 - THE1C-int LTR MaLR 0 1580 1542 2280 121 0 13 chr6 93679018 93679332 -88735910 - AluSg SINE Alu 0 310 1 5697 128 71 36 chr6 93679332 93680323 -88734919 - THE1C-int LTR MaLR -38 1542 512 2933 69 71 0 chr6 93680324 93680691 -88734551 + MLT2A1 LTR ERVL 1 401 -43 369 0 0 0 chr6 93680691 93680732 -88734510 + (CA)n Simple_repeat Simple_repeat 2 42 0 2933 69 71 0 chr6 93680732 93680771 -88734471 + MLT2A1 LTR ERVL 401 436 -8 532 193 42 0 chr6 93680772 93680891 -88734351 + L1M2 LINE L1 2599 2722 -4127 1044 66 0 0 chr6 93680894 93681031 -88734211 + MLT2A1 LTR ERVL 307 443 -1 672 175 0 0 chr6 93681032 93681152 -88734090 - THE1C-int LTR MaLR -1095 556 437 1231 247 114 84 chr6 93681152 93681856 -88733386 + MER50 LTR ERV1 10 734 0 2274 95 6 3 chr6 93681856 93682192 -88733050 - THE1-int LTR MaLR -1235 345 9 1226 216 94 124 chr6 93682192 93683160 -88732082 - LTR1B LTR ERV1 0 1020 1 1019 132 50 11 chr6 93683172 93683339 -88731903 - THE1C LTR MaLR 0 375 216 180 0 0 0 chr6 93683339 93683359 -88731883 + (GA)n Simple_repeat Simple_repeat 1 20 0 1019 132 50 11 chr6 93683359 93683498 -88731744 - THE1C LTR MaLR -159 216 1 405 0 0 0 chr6 93683776 93683821 -88731421 + (TTA)n Simple_repeat Simple_repeat 2 46 0 199 388 33 25 chr6 93684510 93684631 -88730611 + L2 LINE L2 2634 2755 -559 310 318 39 0 chr6 93684862 93684991 -88730251 + MER94 DNA DNA 1 134 0 202 333 67 0 chr6 93684999 93685089 -88730153 + MIR SINE MIR 56 151 -111 428 74 0 0 chr6 93685218 93685272 -88729970 - U2 snRNA snRNA -131 57 4 22 56 0 0 chr6 93685319 93685355 -88729887 + AT_rich Low_complexity Low_complexity 1 36 0 * 3481 184 10 39 chr6 93685349 93685369 -88729873 - L1M1 LINE L1 -743 6105 6086 3746 159 26 47 chr6 93685369 93686072 -88729170 - L1PB4 LINE L1 -10 6146 5459 5280 111 12 3 chr6 93686072 93686804 -88728438 + L1PA14 LINE L1 5419 6158 -3 3481 184 10 39 chr6 93686804 93687729 -88727513 - L1M1 LINE L1 -760 6088 5263 * 42502 59 3 2 chr6 93687682 93693814 -88721428 + L1PA4 LINE L1 15 6152 -3 8614 208 39 113 chr6 93693825 93694224 -88721018 - L1M1 LINE L1 -4252 2597 2170 2092 119 7 0 chr6 93694224 93694518 -88720724 - AluSx SINE Alu -16 296 1 8614 208 39 113 chr6 93694518 93695066 -88720176 - L1M1 LINE L1 -4679 2170 1583 1663 211 0 3 chr6 93695066 93695378 -88719864 - AluJb SINE Alu -1 311 1 8614 208 39 113 chr6 93695378 93697231 -88718011 - L1M1 LINE L1 -5266 1583 5 3595 279 50 98 chr6 93697564 93699663 -88715579 + L1M2 LINE L1 10 2004 -4845 2845 152 5 5 chr6 93699663 93700085 -88715157 - L1PA15 LINE L1 -13 6152 5731 3595 279 50 98 chr6 93700085 93700164 -88715078 + L1M2 LINE L1 2004 2085 -4764 386 123 62 0 chr6 93700166 93700231 -88715011 + L1 LINE L1 3253 3321 -2825 3685 205 55 3 chr6 93700232 93701105 -88714137 + L1 LINE L1 3658 4575 -1571 18460 43 4 1 chr6 93701108 93704039 -88711203 - L1PA4 LINE L1 0 6155 3221 2006 118 3 10 chr6 93704145 93704433 -88710809 + AluSx SINE Alu 1 286 -26 1974 191 79 2 chr6 93704570 93704974 -88710268 + MER63B DNA MER1_type 2 436 0 475 281 85 12 chr6 93705065 93705229 -88710013 + MIR SINE MIR 46 221 -41 405 163 133 20 chr6 93705870 93705968 -88709274 - MER5B DNA MER1_type -69 109 1 22 0 0 0 chr6 93706483 93706505 -88708737 + AT_rich Low_complexity Low_complexity 1 22 0 204 289 0 89 chr6 93706639 93706729 -88708513 - MER5A DNA MER1_type -50 139 58 277 57 0 0 chr6 93707192 93707227 -88708015 + U2 snRNA snRNA 1 35 -153 336 320 73 60 chr6 93707489 93707858 -88707384 + L2 LINE L2 2130 2503 -811 232 213 0 0 chr6 93708265 93708326 -88706916 + L1MC4 LINE L1 6643 6703 -1339 228 149 0 0 chr6 93708336 93708383 -88706859 + (TA)n Simple_repeat Simple_repeat 1 47 0 2284 80 24 0 chr6 93708447 93708736 -88706506 + AluSg SINE Alu 1 296 -14 217 358 104 8 chr6 93709434 93709568 -88705674 - L2 LINE L2 -10 3262 3116 1803 161 33 7 chr6 93709606 93709905 -88705337 - AluJo SINE Alu -5 307 1 2259 94 19 3 chr6 93711197 93711504 -88703738 - AluSx SINE Alu 0 312 1 528 271 74 5 chr6 93712267 93712459 -88702783 + MIR SINE MIR 16 218 -44 432 294 22 22 chr6 93712642 93712826 -88702416 - L2 LINE L2 -178 3135 2952 1764 80 22 0 chr6 93713382 93713606 -88701636 - L1PA10 LINE L1 -3 6165 5937 180 97 0 0 chr6 93715965 93715996 -88699246 + (TG)n Simple_repeat Simple_repeat 1 31 0 1399 199 87 0 chr6 93716129 93716451 -88698791 - L1 LINE L1 -2139 4007 3658 386 123 62 0 chr6 93716452 93716517 -88698725 - L1 LINE L1 -2825 3321 3253 3527 280 47 95 chr6 93716519 93716599 -88698643 - L1M2 LINE L1 -4764 2085 2003 2845 152 5 5 chr6 93716599 93717021 -88698221 + L1PA15 LINE L1 5731 6152 -13 3527 280 47 95 chr6 93717021 93719121 -88696121 - L1M2 LINE L1 -4846 2003 10 8612 208 39 114 chr6 93719454 93721308 -88693934 + L1M2 LINE L1 5 1996 -4853 1663 211 0 3 chr6 93721308 93721620 -88693622 + AluJb SINE Alu 1 311 -1 8612 208 39 114 chr6 93721620 93722168 -88693074 + L1M2 LINE L1 1996 2170 -4679 2092 119 7 0 chr6 93722168 93722462 -88692780 + AluSx SINE Alu 1 296 -16 8612 208 39 114 chr6 93722462 93722861 -88692381 + L1M2 LINE L1 2170 2597 -4252 42843 58 2 1 chr6 93722872 93729012 -88686230 - L1PA4 LINE L1 -3 6152 1 2443 211 42 17 chr6 93729013 93729032 -88686210 + L1M2 LINE L1 2588 2605 -4243 3444 88 14 7 chr6 93729032 93729473 -88685769 + MLT2A1 LTR ERVL 1 444 0 2443 211 42 17 chr6 93729473 93730299 -88684943 + L1M2 LINE L1 2605 3458 -3390 * 4412 156 17 49 chr6 93730279 93731112 -88684130 + L1PA12 LINE L1 5361 6166 -2 1352 213 18 68 chr6 93731120 93731409 -88683833 + L1M2 LINE L1 3447 3749 -3099 6724 87 15 31 chr6 93731409 93733192 -88682050 + SVA Other Other 1 1386 0 1352 213 18 68 chr6 93733192 93733248 -88681994 + L1M2 LINE L1 3749 3806 -3042 287 25 25 0 chr6 93733248 93733288 -88681954 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1352 213 18 68 chr6 93733288 93733563 -88681679 + L1M2 LINE L1 3806 4009 -2839 7451 176 26 19 chr6 93733567 93734860 -88680382 + L1PA12 LINE L1 1 1303 -6278 463 169 0 0 chr6 93734860 93734931 -88680311 - THE1B LTR MaLR 0 375 305 198 0 0 0 chr6 93734931 93734953 -88680289 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7310 64 20 0 chr6 93734953 93735888 -88679354 - L1PA6 LINE L1 -18 6136 5197 30468 120 34 14 chr6 93735885 93741077 -88674165 - L1P LINE L1 -836 5310 14 1577 130 105 4 chr6 93741090 93741367 -88673875 - THE1B LTR MaLR -59 305 1 31207 91 10 58 chr6 93741384 93747849 -88667393 - L1PA4 LINE L1 0 6155 12 790 206 15 20 chr6 93747870 93748074 -88667168 - L1MB3 LINE L1 -3 6180 5978 3684 85 36 48 chr6 93748074 93748676 -88666566 - LTR61 LTR ERV1 0 595 1 9190 227 17 21 chr6 93748678 93750729 -88664513 - HERV3 LTR ERV1 0 8426 6385 204 158 0 0 chr6 93750729 93750767 -88664475 + T-rich Low_complexity Low_complexity 1 38 0 40447 51 2 1 chr6 93750785 93756929 -88658313 - L1PA3 LINE L1 -5 6150 1 5910 195 21 14 chr6 93757010 93758138 -88657104 - HERV3 LTR ERV1 -2134 6292 5157 631 181 17 0 chr6 93758136 93758252 -88656990 - HERV3 LTR ERV1 -4602 3824 3707 * 3978 265 88 59 chr6 93758257 93760349 -88654893 - HERV3 LTR ERV1 -5957 2469 317 1748 195 18 23 chr6 93760444 93760839 -88654403 - HERV3 LTR ERV1 -8033 393 1 3322 95 50 58 chr6 93760839 93761439 -88653803 - LTR61 LTR ERV1 0 595 1 3504 173 32 14 chr6 93761439 93762221 -88653021 - L1MB3 LINE L1 -202 5981 5185 224 29 86 0 chr6 93763049 93763084 -88652158 + A-rich Low_complexity Low_complexity 1 38 0 6037 214 72 37 chr6 93763280 93764462 -88650780 - L1MB3 LINE L1 -1007 5139 3849 2244 101 0 3 chr6 93764462 93764760 -88650482 - AluY SINE Alu -14 297 1 6037 214 72 37 chr6 93764760 93765683 -88649559 - L1MB3 LINE L1 -2297 3849 2960 839 184 11 0 chr6 93765683 93765857 -88649385 + CT-rich Low_complexity Low_complexity 3 178 0 1579 172 0 8 chr6 93765867 93766128 -88649114 - AluJo SINE Alu -53 259 1 279 0 0 0 chr6 93766149 93766180 -88649062 + (TC)n Simple_repeat Simple_repeat 2 32 0 261 83 0 0 chr6 93766179 93766215 -88649027 + (TA)n Simple_repeat Simple_repeat 1 36 0 * 376 185 0 11 chr6 93766180 93766296 -88648946 - L1 LINE L1 -2139 4007 3926 447 139 28 0 chr6 93766298 93766370 -88648872 - AluS SINE Alu -14 296 223 390 91 0 0 chr6 93766370 93766425 -88648817 + (TA)n Simple_repeat Simple_repeat 1 55 0 27623 128 12 58 chr6 93766425 93772853 -88642389 - L1PA7 LINE L1 -18 6136 12 2036 190 86 18 chr6 93773230 93773683 -88641559 + MLT1D LTR MaLR 22 505 0 290 295 79 46 chr6 93773851 93774092 -88641150 + MLT1L LTR MaLR 321 569 -46 477 212 10 0 chr6 93775105 93775204 -88640038 - Tigger3(Golem) DNA MER2_type -11 3018 2919 22 35 0 0 chr6 93775204 93775233 -88640009 + AT_rich Low_complexity Low_complexity 1 29 0 408 238 0 0 chr6 93775334 93775414 -88639828 - Tigger3(Golem) DNA MER2_type -2949 80 1 511 279 58 39 chr6 93775420 93775678 -88639564 - HAL1 LINE L1 -28 2479 2217 1090 246 148 26 chr6 93775682 93776255 -88638987 - HAL1 LINE L1 -652 1855 1213 1855 266 58 8 chr6 93776255 93776769 -88638473 + MLT1F LTR MaLR 1 540 -2 263 186 49 147 chr6 93776807 93776909 -88638333 - MLT1G3 LTR MaLR -259 336 245 * 300 283 10 0 chr6 93776899 93777054 -88638188 - MLT1G3 LTR MaLR -412 118 1 22 0 0 0 chr6 93777140 93777162 -88638080 + AT_rich Low_complexity Low_complexity 1 22 0 1791 182 3 16 chr6 93777856 93778169 -88637073 + AluSq SINE Alu 4 312 -1 388 158 12 12 chr6 93778694 93778776 -88636466 + L1MA9 LINE L1 5940 6021 -291 21 36 0 0 chr6 93780543 93780571 -88634671 + AT_rich Low_complexity Low_complexity 1 28 0 2454 127 57 82 chr6 93781439 93781556 -88633686 - L1MA9 LINE L1 -5 6307 6189 2252 154 56 17 chr6 93781556 93781966 -88633276 + MSTB LTR MaLR 1 426 0 2454 127 57 82 chr6 93781966 93782406 -88632836 - L1MA9 LINE L1 -123 6189 5764 8422 106 8 5 chr6 93782406 93784448 -88630794 - L1PA7 LINE L1 -1 6468 4427 10379 136 32 25 chr6 93784449 93786596 -88628646 - L1PA7 LINE L1 -4278 2183 5 1692 197 42 4 chr6 93786601 93787327 -88627915 - L1MA9 LINE L1 -534 5778 5013 257 0 30 0 chr6 93787327 93787360 -88627882 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7383 33 2 0 chr6 93787360 93788693 -88626549 - L1PA4 LINE L1 -18 6137 4803 1692 197 42 4 chr6 93787360 93787372 -88627870 - L1MA9 LINE L1 -1299 5013 5003 13589 87 6 0 chr6 93788693 93790601 -88624641 - L1P LINE L1 -4226 1920 1 11987 104 58 12 chr6 93790624 93792693 -88622549 + MER4A-int LTR ERV1 4433 6596 -2 448 144 89 0 chr6 93792708 93792798 -88622444 + MER4A LTR ERV1 1 98 -566 1598 147 3 46 chr6 93792798 93793159 -88622083 + MER4A LTR ERV1 261 664 0 279 333 11 0 chr6 93793639 93793729 -88621513 + L2 LINE L2 1950 2040 -1274 1497 195 7 4 chr6 93793730 93794042 -88621200 - AluJb SINE Alu 0 319 7 417 236 13 89 chr6 93794088 93794245 -88620997 - MIR SINE MIR -10 252 108 339 302 17 17 chr6 93794304 93794420 -88620822 + L2 LINE L2 2172 2287 -1027 438 206 98 57 chr6 93795228 93795422 -88619820 - LTR16C LTR ERVL -2 489 288 601 238 17 35 chr6 93795829 93796001 -88619241 + MIR SINE MIR 94 262 0 6952 52 20 0 chr6 93796528 93797476 -88617766 - L1PA7 LINE L1 -5 6149 5197 13169 79 64 6 chr6 93797476 93799533 -88615709 - L1P LINE L1 -839 5307 3133 7878 40 0 0 chr6 93799633 93800667 -88614575 + L1P LINE L1 2228 3261 -2885 8823 85 6 0 chr6 93800767 93802160 -88613082 - L1P3 LINE L1 -661 5511 4113 1843 67 31 0 chr6 93802260 93802626 -88612616 - L1P2 LINE L1 -659 5495 5122 25169 105 11 10 chr6 93802740 93806677 -88608565 + L1P LINE L1 11 3953 -2193 1237 82 0 0 chr6 93806778 93806949 -88608293 + L1PA6 LINE L1 5984 6154 0 21 36 0 0 chr6 93806988 93807016 -88608226 + AT_rich Low_complexity Low_complexity 1 28 0 393 241 36 60 chr6 93807174 93807340 -88607902 + MLT1A2 LTR MaLR 1 162 -212 2161 231 46 68 chr6 93807355 93808067 -88607175 + L1P3 LINE L1 10 705 -5756 180 0 0 0 chr6 93808067 93808087 -88607155 + (CACAG)n Simple_repeat Simple_repeat 1 20 0 2161 231 46 68 chr6 93808087 93808159 -88607083 + L1P3 LINE L1 705 777 -5684 486 254 74 19 chr6 93808161 93808394 -88606848 + MLT1B LTR MaLR 68 340 -50 315 188 0 31 chr6 93808397 93808461 -88606781 - MLT1A2 LTR MaLR -312 62 1 291 288 108 22 chr6 93810092 93810231 -88605011 - L2 LINE L2 0 3313 3163 2148 84 7 0 chr6 93810248 93810521 -88604721 + AluSx SINE Alu 29 303 -9 1037 251 55 77 chr6 93810653 93811071 -88604171 - MLT2F LTR ERVL -254 409 1 276 333 89 39 chr6 93811076 93811256 -88603986 + L2 LINE L2 2848 3036 -277 820 237 51 117 chr6 93811684 93812119 -88603123 + MLT2F LTR ERVL 200 605 -58 655 347 74 40 chr6 93812142 93812791 -88602451 + ERVL LTR ERVL 1 693 -4984 4386 279 61 23 chr6 93812827 93813332 -88601910 + ERVL LTR ERVL 819 1304 -4460 2600 56 0 3 chr6 93813332 93813638 -88601604 - AluY SINE Alu -6 305 1 4386 279 61 23 chr6 93813638 93814781 -88600461 + ERVL LTR ERVL 1304 2529 -3235 1597 273 11 18 chr6 93814781 93815221 -88600021 - LTR40a LTR ERVL 0 519 83 1765 97 12 0 chr6 93815221 93815469 -88599773 - L1PA10 LINE L1 0 6168 5918 2996 103 6 0 chr6 93815569 93816157 -88599085 - L1PA10 LINE L1 -479 5689 5098 359 182 159 11 chr6 93816161 93816249 -88598993 - LTR40a LTR ERVL -418 101 1 356 286 9 18 chr6 93816250 93816362 -88598880 + ERVL LTR ERVL 2487 2597 -2888 1849 210 18 0 chr6 93816362 93816743 -88598499 + MLT2C2 LTR ERVL 1 388 -76 981 254 26 4 chr6 93816736 93817000 -88598242 - MER63B DNA MER1_type -165 271 2 * 283 189 225 18 chr6 93817123 93817234 -88598008 + Ricksha DNA DNA 207 340 -2906 1786 264 39 54 chr6 93817240 93817904 -88597338 + MLT2F LTR ERVL 2 655 -8 1162 312 81 8 chr6 93817929 93818485 -88596757 - L2 LINE L2 -513 2801 2162 492 322 98 5 chr6 93819179 93819393 -88595849 + MIR SINE MIR 29 262 0 221 139 23 0 chr6 93819464 93819507 -88595735 + CT-rich Low_complexity Low_complexity 1 44 0 1022 234 101 92 chr6 93819534 93820299 -88594943 + LTR41 LTR ERVL 1 772 -1 249 174 0 0 chr6 93820299 93820345 -88594897 - L1ME2 LINE L1 -11 6153 6108 197 119 24 0 chr6 93820394 93820436 -88594806 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1204 239 18 6 chr6 93820445 93820780 -88594462 - L1ME LINE L1 -342 5822 5484 217 138 15 62 chr6 93820980 93821045 -88594197 + T-rich Low_complexity Low_complexity 5 66 0 6108 143 7 7 chr6 93821046 93822729 -88592513 - L1PB1 LINE L1 -3 6148 4466 244 361 34 8 chr6 93822774 93822893 -88592349 + L2 LINE L2 3182 3303 -10 9186 140 21 24 chr6 93822992 93823122 -88592120 - L1MA3 LINE L1 -1 6304 6175 7271 31 0 0 chr6 93823122 93824347 -88590895 - L1PA4 LINE L1 -2 6153 4932 9186 140 21 24 chr6 93824347 93827015 -88588227 - L1MA3 LINE L1 -130 6175 3517 390 111 32 0 chr6 93827016 93827079 -88588163 + MLT1E LTR MaLR 529 593 0 15894 37 7 1 chr6 93827290 93829774 -88585468 - L1PA4 LINE L1 -308 5847 3348 2219 105 3 0 chr6 93829954 93830248 -88584994 + AluSc SINE Alu 3 297 -12 2395 96 3 0 chr6 93830248 93830560 -88584682 + AluSp SINE Alu 1 313 0 238 309 11 0 chr6 93832666 93832760 -88582482 + MIR SINE MIR 66 160 -102 8283 98 2 5 chr6 93832766 93834737 -88580505 + L1PA7 LINE L1 4188 6161 0 23 54 0 0 chr6 93834858 93834895 -88580347 + AT_rich Low_complexity Low_complexity 1 37 0 1781 152 18 18 chr6 93834896 93835231 -88580011 - L1PB3 LINE L1 -2 6152 5818 286 315 42 12 chr6 93835245 93835410 -88579832 - L1M4 LINE L1 -2607 3539 3370 29496 53 1 0 chr6 93835442 93841462 -88573780 - L1PA4 LINE L1 -2 6153 129 1925 179 50 33 chr6 93841759 93842065 -88573177 + MLT2C2 LTR ERVL 3 319 -145 2516 47 3 0 chr6 93842065 93842364 -88572878 - AluY SINE Alu -11 300 1 1925 179 50 33 chr6 93842364 93842477 -88572765 + MLT2C2 LTR ERVL 319 429 -35 249 114 23 0 chr6 93842525 93842569 -88572673 + MLT2C2 LTR ERVL 471 515 0 1505 202 6 39 chr6 93843074 93843435 -88571807 - MLT1A2 LTR MaLR -13 361 13 225 0 0 0 chr6 93844539 93844564 -88570678 + (T)n Simple_repeat Simple_repeat 1 25 0 258 266 45 19 chr6 93845230 93845384 -88569858 + MER103 DNA DNA 2 159 -7 180 0 0 0 chr6 93845386 93845406 -88569836 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 335 102 0 0 chr6 93845746 93845795 -88569447 - L1P LINE L1 -6095 51 3 1487 84 49 0 chr6 93845795 93846020 -88569222 - L1PB3 LINE L1 -325 5829 5594 2040 126 0 0 chr6 93846073 93846350 -88568892 + AluY SINE Alu 21 297 -14 238 295 98 36 chr6 93846858 93846970 -88568272 - L2 LINE L2 -8 3264 3146 786 311 97 3 chr6 93847141 93847492 -88567750 - MLT1J2 LTR MaLR 0 450 67 5979 176 27 30 chr6 93848582 93850280 -88564962 - L1P5 LINE L1 -591 5565 3881 22 56 0 0 chr6 93850386 93850422 -88564820 + AT_rich Low_complexity Low_complexity 1 36 0 352 350 49 0 chr6 93851244 93851367 -88563875 - HAL1 LINE L1 -1901 606 478 1088 186 10 88 chr6 93851403 93851699 -88563543 + MER58 DNA MER1_type 2 274 -67 441 178 22 0 chr6 93851697 93851787 -88563455 + MER58 DNA MER1_type 2329 2420 0 * 866 180 0 0 chr6 93851969 93852108 -88563134 + AluJb SINE Alu 169 307 -5 603 238 95 18 chr6 93852186 93852354 -88562888 - MIR SINE MIR -79 183 3 819 241 0 0 chr6 93852603 93852769 -88562473 - FRAM SINE Alu 0 166 1 2387 105 0 3 chr6 93852943 93853257 -88561985 + AluSq SINE Alu 1 313 0 252 335 168 43 chr6 93854725 93855381 -88559861 + L2 LINE L2 1968 2705 -609 329 353 42 104 chr6 93855401 93855883 -88559359 + L2 LINE L2 2818 3269 -3 219 344 0 0 chr6 93855883 93855973 -88559269 - L2 LINE L2 -1353 1961 1872 284 164 0 0 chr6 93856895 93856950 -88558292 - MLT2D LTR ERVL -2 518 464 301 203 27 14 chr6 93856962 93857036 -88558206 - L1MC4 LINE L1 -1352 6690 6616 1698 156 72 12 chr6 93857038 93857371 -88557871 - MLT2D LTR ERVL -56 358 6 227 281 151 20 chr6 93858615 93858761 -88556481 + LTR33A LTR ERVL 317 481 -42 1016 165 18 19 chr6 93859065 93859305 -88555937 - LTR12 LTR ERV1 -246 468 181 1193 304 41 26 chr6 93859466 93860346 -88554896 - HERV17 LTR ERV1 0 8626 7511 2749 241 14 12 chr6 93860589 93861246 -88553996 - HERV17 LTR ERV1 -6259 2367 1710 263 261 0 0 chr6 93861418 93861483 -88553759 - HERV17 LTR ERV1 -7310 947 883 1455 235 25 40 chr6 93861845 93862292 -88552950 - HERV17 LTR ERV1 -8170 456 17 539 167 25 25 chr6 93862306 93862433 -88552809 - LTR12 LTR ERV1 -131 583 354 235 246 29 0 chr6 93862438 93862507 -88552735 - LTR30 LTR ERV1 -108 614 544 2018 125 10 3 chr6 93863358 93863655 -88551587 - AluSg SINE Alu -11 299 1 604 111 7 146 chr6 93864113 93864257 -88550985 + L1PA15-16 LINE L1 21 144 -6705 * 4005 162 23 19 chr6 93864255 93865003 -88550239 + L1PA15-16 LINE L1 1126 1876 -4973 1654 121 8 77 chr6 93865012 93865383 -88549859 - MER4A LTR ERV1 0 664 261 268 89 22 22 chr6 93865383 93865428 -88549814 - MER4A LTR ERV1 -566 98 54 5746 190 38 23 chr6 93865457 93867398 -88547844 + L1PA15-16 LINE L1 1884 3861 -2988 5601 235 11 24 chr6 93867400 93869247 -88545995 - L1PA15-16 LINE L1 -5461 1388 16 2491 222 60 14 chr6 93869268 93870001 -88545241 - L1M2 LINE L1 -3112 4453 3687 1903 174 111 3 chr6 93870010 93870396 -88544846 - MSTA LTR MaLR 0 428 1 1796 169 36 6 chr6 93870396 93870752 -88544490 - MSTA-int LTR MaLR 0 1651 1285 746 260 109 14 chr6 93870755 93871040 -88544202 - MLT2B3 LTR ERVL -242 312 1 774 267 87 47 chr6 93871081 93871657 -88543585 - L1 LINE L1 -3960 3605 3007 * 33864 46 1 0 chr6 93871656 93876886 -88538356 - L1PA2 LINE L1 0 6155 923 372 83 17 0 chr6 93876987 93877047 -88538195 + L1P LINE L1 5315 5375 -780 2296 267 60 8 chr6 93877070 93878050 -88537192 - L1M2 LINE L1 -4241 3325 2295 676 186 36 52 chr6 93878915 93879109 -88536133 + L1 LINE L1 2171 2361 -3785 473 342 75 28 chr6 93879649 93880073 -88535169 - L1M2 LINE L1 -5696 1800 1357 2285 92 3 0 chr6 93880400 93880695 -88534547 - AluY SINE Alu -15 296 1 21 26 0 26 chr6 93880703 93880723 -88534519 + AT_rich Low_complexity Low_complexity 1 21 -17 1681 192 3 10 chr6 93880723 93881014 -88534228 - AluJo SINE Alu -23 289 1 21 26 0 26 chr6 93881014 93881032 -88534210 + AT_rich Low_complexity Low_complexity 21 38 0 368 279 0 12 chr6 93881438 93881524 -88533718 + L2 LINE L2 3168 3252 -20 2051 110 23 19 chr6 93881899 93882208 -88533034 - AluSx SINE Alu -2 310 1 210 37 0 0 chr6 93882912 93882939 -88532303 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1409 77 30 128 chr6 93883185 93883358 -88531884 - L1MA2 LINE L1 0 6304 6116 198 0 0 0 chr6 93883358 93883380 -88531862 + (TA)n Simple_repeat Simple_repeat 1 22 0 1409 77 30 128 chr6 93883380 93883400 -88531842 - L1MA2 LINE L1 -188 6116 6096 1026 107 0 40 chr6 93883400 93883550 -88531692 - U4 snRNA snRNA -1 144 1 1409 77 30 128 chr6 93883550 93883653 -88531589 - L1MA2 LINE L1 -208 6096 6036 23 33 0 0 chr6 93883737 93883767 -88531475 + AT_rich Low_complexity Low_complexity 1 30 0 421 228 76 22 chr6 93884226 93884410 -88530832 + HAL1 LINE L1 271 464 -2043 1353 273 116 35 chr6 93884752 93885670 -88529572 - HAL1 LINE L1 -1239 1268 277 725 211 87 83 chr6 93885679 93885897 -88529345 + MER58A DNA MER1_type 1 219 -5 532 315 47 23 chr6 93885909 93886166 -88529076 - HAL1 LINE L1 -2244 263 1 249 244 244 9 chr6 93886166 93886281 -88528961 - MIR SINE MIR -96 166 25 * 320 291 107 0 chr6 93886275 93886378 -88528864 + L2 LINE L2 3188 3301 -12 1245 285 84 32 chr6 93886746 93887095 -88528147 + L2 LINE L2 1989 2379 -935 1121 188 34 0 chr6 93887095 93887303 -88527939 - MER20 DNA MER1_type -1 218 4 1245 285 84 32 chr6 93887303 93887511 -88527731 + L2 LINE L2 2379 2575 -739 405 275 15 23 chr6 93887751 93887882 -88527360 - MLT1H LTR MaLR -325 224 95 658 268 76 15 chr6 93887943 93888141 -88527101 + L2 LINE L2 2570 2779 -535 630 259 78 0 chr6 93888150 93888393 -88526849 + L1MC4a LINE L1 5867 6128 -1680 971 267 82 55 chr6 93888460 93888970 -88526272 + L1MC4 LINE L1 6357 6880 -1162 2786 89 3 0 chr6 93889043 93889424 -88525818 - L1PA5 LINE L1 -1 6153 5772 33585 47 138 2 chr6 93889436 93894831 -88520411 - L1HS LINE L1 0 6155 1 2421 85 3 0 chr6 93895203 93895508 -88519734 - AluY SINE Alu -5 306 1 267 152 0 0 chr6 93896750 93896796 -88518446 + (CCA)n Simple_repeat Simple_repeat 3 48 0 22 35 0 0 chr6 93896947 93896976 -88518266 + AT_rich Low_complexity Low_complexity 1 29 0 191 313 0 81 chr6 93897413 93897512 -88517730 + L2 LINE L2 2968 3058 -214 370 296 15 75 chr6 93897701 93897900 -88517342 + L2 LINE L2 3091 3277 -36 371 132 8 182 chr6 93897900 93897939 -88517303 + MER69 DNA AcHobo 2427 2471 -55 1986 121 6 37 chr6 93897939 93898261 -88516981 - AluSx SINE Alu 0 312 1 371 132 8 182 chr6 93898261 93898342 -88516900 + MER69 DNA AcHobo 2471 2526 0 199 246 46 31 chr6 93899388 93899453 -88515789 - MIR SINE MIR -2 260 195 2169 100 35 0 chr6 93899798 93900087 -88515155 - AluSg SINE Alu -11 299 1 7466 106 16 9 chr6 93900377 93901501 -88513741 + L1PA7 LINE L1 3382 4513 -1633 346 149 40 0 chr6 93901493 93901567 -88513675 + L1P LINE L1 3674 3750 -2396 * 281 95 0 0 chr6 93901574 93901616 -88513626 + L1P LINE L1 4864 4905 -1241 6026 91 46 0 chr6 93901616 93903205 -88512037 + L1PA7 LINE L1 4513 6148 -6 1249 147 47 105 chr6 93903269 93903527 -88511715 - AluJo SINE Alu -17 295 53 2010 131 0 0 chr6 93903804 93904112 -88511130 + AluSx SINE Alu 1 308 0 291 114 0 0 chr6 93904111 93904155 -88511087 + (CA)n Simple_repeat Simple_repeat 2 45 0 200 229 0 0 chr6 93905944 93905979 -88509263 - L3 LINE CR1 -109 1468 1434 * 471 292 41 23 chr6 93905974 93906145 -88509097 + MIR SINE MIR 28 201 -61 31 104 0 0 chr6 93907000 93907115 -88508127 + AT_rich Low_complexity Low_complexity 1 115 0 1659 173 22 4 chr6 93907119 93907397 -88507845 + AluJo SINE Alu 1 283 -29 3335 32 5 0 chr6 93907397 93907798 -88507444 + L1PA3 LINE L1 5753 6155 0 5326 151 27 22 chr6 93907837 93909220 -88506022 + L1PA16 LINE L1 4784 6157 -9 25 0 0 0 chr6 93909287 93909312 -88505930 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr6 93909484 93909512 -88505730 + AT_rich Low_complexity Low_complexity 1 28 0 205 309 24 36 chr6 93909707 93909791 -88505451 - L2 LINE L2 0 3272 3190 1419 104 33 0 chr6 93909883 93910094 -88505148 - L1PA14 LINE L1 0 6161 5944 248 273 15 0 chr6 93910199 93910265 -88504977 + CT-rich Low_complexity Low_complexity 5 71 0 2138 132 7 0 chr6 93911568 93911878 -88503364 - AluSx SINE Alu 0 312 1 517 251 144 11 chr6 93912973 93913320 -88501922 - L1ME4a LINE L1 -14 6107 5715 732 230 0 37 chr6 93913564 93913725 -88501517 - FRAM SINE Alu -27 149 1 274 248 66 36 chr6 93913733 93913870 -88501372 - L1ME4a LINE L1 -2413 5395 5255 5466 172 21 7 chr6 93913921 93915790 -88499452 - L1MA4 LINE L1 -5 6295 4394 2110 162 6 0 chr6 93915804 93916168 -88499074 - L1PB4 LINE L1 -2 6154 5789 23 68 0 0 chr6 93916177 93916221 -88499021 + AT_rich Low_complexity Low_complexity 1 44 0 1419 187 74 23 chr6 93916224 93916534 -88498708 - LTR10A LTR ERV1 -99 510 185 5380 210 15 24 chr6 93916593 93917956 -88497286 - L1PA7 LINE L1 -377 5779 4433 2384 109 3 6 chr6 93917956 93918313 -88496929 + L1PA7 LINE L1 5797 6152 -2 5380 210 15 24 chr6 93918313 93918775 -88496467 - L1PB4 LINE L1 -1723 4433 3968 2385 74 3 16 chr6 93918775 93919085 -88496157 - AluY SINE Alu -3 308 3 13828 47 14 12 chr6 93919091 93921648 -88493594 - L1PA3 LINE L1 -1 6154 3595 12215 46 3 1 chr6 93921749 93923312 -88491930 - L1PA3 LINE L1 -2793 3353 1788 9565 50 6 1 chr6 93923310 93924906 -88490336 + L1P2 LINE L1 4179 5784 -370 * 30265 52 35 4 chr6 93924906 93928845 -88486397 + L1P LINE L1 1 4063 -2083 954 181 6 0 chr6 93928848 93929019 -88486223 - MER3 DNA MER1_type -80 129 5 780 258 69 67 chr6 93929020 93929438 -88485804 + L1MC4 LINE L1 6888 7306 -736 251 288 38 12 chr6 93929671 93929751 -88485491 - MIR SINE MIR -71 191 110 246 152 22 22 chr6 93929767 93929813 -88485429 + L1MEd LINE L1 4 49 -6070 31 58 0 0 chr6 93929878 93929930 -88485312 + AT_rich Low_complexity Low_complexity 1 52 0 211 366 97 0 chr6 93930083 93930176 -88485066 - L3 LINE CR1 -438 1139 1038 319 267 75 48 chr6 93931114 93931260 -88483982 + L1ME4a LINE L1 5963 6112 -9 14229 203 17 11 chr6 93931330 93937869 -88477373 + L1PB1 LINE L1 6 6866 -1 27 0 0 0 chr6 93937869 93937896 -88477346 + AT_rich Low_complexity Low_complexity 1 27 0 232 365 58 6 chr6 93937912 93938068 -88477174 + L3 LINE CR1 1263 1426 -151 182 37 37 0 chr6 93938742 93938769 -88476473 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7847 75 5 3 chr6 93940394 93941399 -88473843 + LTR13 LTR ERVK 1 1007 0 252 256 167 0 chr6 93941528 93941618 -88473624 + MIR SINE MIR 40 144 -118 1200 263 87 44 chr6 93942247 93942773 -88472469 - L2 LINE L2 0 3313 2774 2046 163 35 31 chr6 93943325 93943859 -88471383 - MLT2A2 LTR ERVL -15 539 1 330 344 62 16 chr6 93943888 93944016 -88471226 - L2 LINE L2 -3 3269 3136 2423 24 0 0 chr6 93944443 93944739 -88470503 - L1PA3 LINE L1 -81 6074 5779 605 38 0 0 chr6 93944739 93944818 -88470424 + L1PA3 LINE L1 6077 6155 0 2973 102 38 2 chr6 93946203 93946774 -88468468 + L1P4 LINE L1 5138 5722 -441 24 0 0 0 chr6 93947451 93947475 -88467767 + AT_rich Low_complexity Low_complexity 1 24 0 1908 146 31 0 chr6 93947596 93947883 -88467359 - AluSx SINE Alu -16 296 1 183 184 0 0 chr6 93947933 93947971 -88467271 + A-rich Low_complexity Low_complexity 1 38 0 2119 153 8 0 chr6 93948132 93948499 -88466743 - L1PB1 LINE L1 0 6867 6498 271 93 53 13 chr6 93948512 93948587 -88466655 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 21 71 0 0 chr6 93948599 93948641 -88466601 + AT_rich Low_complexity Low_complexity 1 42 0 413 77 70 21 chr6 93948646 93948789 -88466453 + (TA)n Simple_repeat Simple_repeat 2 151 0 12560 208 37 7 chr6 93948789 93948812 -88466430 - L1PB1 LINE L1 -356 6511 6490 196 0 114 0 chr6 93948812 93948856 -88466386 + (TA)n Simple_repeat Simple_repeat 1 49 0 12560 208 37 7 chr6 93948856 93953290 -88461952 - L1PB1 LINE L1 -377 6490 1798 423 87 0 0 chr6 93953615 93953684 -88461558 + (A)n Simple_repeat Simple_repeat 1 69 0 22 0 0 0 chr6 93954303 93954325 -88460917 + AT_rich Low_complexity Low_complexity 1 22 0 234 262 131 37 chr6 93955291 93955398 -88459844 - MIR3 SINE MIR -11 197 81 191 391 11 0 chr6 93955604 93955691 -88459551 + L3 LINE CR1 1429 1516 -61 202 291 18 0 chr6 93955780 93955835 -88459407 - MER5A DNA MER1_type -66 123 68 3036 165 2 0 chr6 93955838 93956407 -88458835 - L1P LINE L1 -896 5250 4681 510 238 30 0 chr6 93956713 93956814 -88458428 - MER5A DNA MER1_type -77 112 9 2278 169 29 0 chr6 93957627 93958042 -88457200 - L1PA16 LINE L1 -10 6156 5730 644 308 97 14 chr6 93958137 93958498 -88456744 + MLT1L LTR MaLR 1 391 -224 472 257 29 29 chr6 93958877 93959017 -88456225 - L2 LINE L2 0 3313 3174 1308 228 63 36 chr6 93959199 93959563 -88455679 - MLT1A2 LTR MaLR 0 374 1 1610 198 84 57 chr6 93959572 93960082 -88455160 - LTR55 LTR ERV -24 524 1 343 228 236 16 chr6 93960488 93960615 -88454627 - MIR3 SINE MIR -23 185 31 644 322 10 0 chr6 93961449 93961657 -88453585 - MER58A DNA MER1_type -10 214 5 222 37 0 0 chr6 93961720 93961747 -88453495 + (TG)n Simple_repeat Simple_repeat 2 28 0 3047 147 54 88 chr6 93963138 93963873 -88451369 + LTR1 LTR ERV1 68 777 -8 15152 164 56 35 chr6 93963915 93966901 -88448341 + HUERS-P2 LTR ERV1 42 3088 0 3772 127 60 110 chr6 93966939 93967551 -88447691 + LTR1 LTR ERV1 1 563 -222 2344 110 3 0 chr6 93967551 93967861 -88447381 + AluSp SINE Alu 1 311 -2 3772 127 60 110 chr6 93967861 93968074 -88447168 + LTR1 LTR ERV1 563 785 0 382 214 260 12 chr6 93968434 93968607 -88446635 - MLT1J2 LTR MaLR -220 230 15 3998 108 6 43 chr6 93968706 93969335 -88445907 - LTR14B LTR ERVK 0 608 3 428 281 134 24 chr6 93969396 93969560 -88445682 - MIR3 SINE MIR -6 202 21 46 0 0 0 chr6 93971869 93971915 -88443327 + AT_rich Low_complexity Low_complexity 1 46 0 208 216 0 0 chr6 93972241 93972278 -88442964 + (CA)n Simple_repeat Simple_repeat 2 38 0 379 83 4 20 chr6 93972755 93972820 -88442422 - MLT1D LTR MaLR -1 504 450 1893 164 0 3 chr6 93972821 93973108 -88442134 + AluSx SINE Alu 1 286 -26 1119 181 6 138 chr6 93973142 93973491 -88441751 - MLT1D LTR MaLR -67 438 136 254 314 29 38 chr6 93973853 93973958 -88441284 - L2 LINE L2 -7 3306 3203 1630 108 74 0 chr6 93974382 93974640 -88440602 + L1PA14 LINE L1 5883 6159 -2 367 294 21 28 chr6 93974953 93975096 -88440146 + MIR3 SINE MIR 60 201 -7 1664 202 33 48 chr6 93975305 93975701 -88439541 + MLT1B LTR MaLR 1 390 0 1326 121 14 0 chr6 93975790 93976005 -88439237 + L1MA3 LINE L1 6088 6305 0 5837 136 6 15 chr6 93976134 93977410 -88437832 - L1PB1 LINE L1 -2 7211 5948 1402 183 29 4 chr6 93977410 93977683 -88437559 - MSTA LTR MaLR -148 280 1 9413 204 27 13 chr6 93977685 93978543 -88436699 - L1PB1 LINE L1 -1592 5616 4772 333 0 0 0 chr6 93978543 93978580 -88436662 + (TG)n Simple_repeat Simple_repeat 2 38 0 9413 204 27 13 chr6 93978580 93979701 -88435541 - L1PB1 LINE L1 -2436 4772 3595 1859 199 20 54 chr6 93979701 93980054 -88435188 + MSTC LTR MaLR 1 338 -90 1903 138 3 55 chr6 93980054 93980380 -88434862 + AluSx SINE Alu 1 309 -3 1859 199 20 54 chr6 93980380 93980469 -88434773 + MSTC LTR MaLR 338 428 0 9413 204 27 13 chr6 93980469 93980820 -88434422 - L1PB1 LINE L1 -3613 3595 3251 215 31 31 0 chr6 93980824 93980856 -88434386 + (TG)n Simple_repeat Simple_repeat 2 34 0 443 194 10 31 chr6 93980863 93980961 -88434281 - FAM SINE Alu -29 156 61 6907 206 34 42 chr6 93980995 93981727 -88433515 - L1PB1 LINE L1 -3953 3256 2520 2060 219 52 59 chr6 93981727 93982285 -88432957 + MLT2B3 LTR ERVL 1 554 0 6907 206 34 42 chr6 93982285 93982673 -88432569 - L1PB1 LINE L1 -4689 2520 2130 10708 181 7 2 chr6 93982673 93985521 -88429721 + L1PA13 LINE L1 3281 6144 -19 6907 206 34 42 chr6 93985521 93986295 -88428947 - L1PB1 LINE L1 -5079 2130 1376 2434 240 88 28 chr6 93986271 93987059 -88428183 - L1PB1 LINE L1 -6374 835 1 * 809 148 54 58 chr6 93987793 93988016 -88427226 - Charlie5 DNA MER1_type 0 2624 2403 292 293 107 43 chr6 93988474 93988614 -88426628 - MIR SINE MIR -66 196 48 471 282 45 45 chr6 93988953 93989155 -88426087 - L2 LINE L2 -5 3308 3107 570 321 84 28 chr6 93989514 93989906 -88425336 - LTR16A LTR ERVL -18 432 19 591 308 36 40 chr6 93990243 93990496 -88424746 - L2 LINE L2 -252 3061 2810 340 242 0 0 chr6 93990498 93990564 -88424678 - L2 LINE L2 -2 3311 3246 * 670 312 54 13 chr6 93990560 93990858 -88424384 - L2 LINE L2 -1276 2038 1729 773 255 73 49 chr6 93991034 93991281 -88423961 + MIR SINE MIR 3 255 -7 1989 147 37 65 chr6 93991923 93992324 -88422918 + MLT1B LTR MaLR 1 390 0 346 311 39 0 chr6 93993282 93993385 -88421857 + L2 LINE L2 3166 3272 0 2697 132 19 14 chr6 93993950 93994376 -88420866 - MSTA LTR MaLR 0 428 1 2118 155 29 73 chr6 93994543 93994995 -88420247 - MSTB1 LTR MaLR 0 432 1 210 37 0 0 chr6 93995162 93995189 -88420053 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2285 87 10 7 chr6 93995337 93995636 -88419606 - AluSp SINE Alu -13 300 1 241 404 56 12 chr6 93996957 93997118 -88418124 - MIR3 SINE MIR -22 186 19 183 339 69 62 chr6 93997618 93997748 -88417494 - L2 LINE L2 -421 2893 2763 1176 235 141 35 chr6 93997806 93998211 -88417031 - MLT1C LTR MaLR 0 467 20 510 43 0 160 chr6 93998241 93998335 -88416907 - MADE1 DNA Mariner 0 80 2 256 191 0 0 chr6 93998735 93998782 -88416460 + MER5B DNA MER1_type 127 173 -5 21492 157 20 9 chr6 93999019 94002848 -88412394 + L1MA2 LINE L1 12 3795 -3928 2458 76 0 3 chr6 94002848 94003152 -88412090 + AluY SINE Alu 3 305 -6 21492 157 20 9 chr6 94003152 94006881 -88408361 + L1MA2 LINE L1 3795 7723 0 21 36 0 0 chr6 94006881 94006909 -88408333 + AT_rich Low_complexity Low_complexity 1 28 0 210 79 0 127 chr6 94006947 94007010 -88408232 + (GTATG)n Simple_repeat Simple_repeat 3 57 0 703 283 30 17 chr6 94007067 94007304 -88407938 - MIR SINE MIR -15 247 8 2194 108 10 0 chr6 94008076 94008381 -88406861 + AluSx SINE Alu 1 308 -4 2203 79 7 0 chr6 94008657 94008948 -88406294 + L1PA7 LINE L1 5862 6154 0 525 295 88 37 chr6 94009058 94009275 -88405967 + MIR SINE MIR 29 256 -6 11006 239 54 22 chr6 94010425 94010611 -88404631 + L1PB4 LINE L1 201 380 -6479 680 103 9 0 chr6 94010611 94010718 -88404524 + (TA)n Simple_repeat Simple_repeat 1 108 0 413 55 18 0 chr6 94010719 94010774 -88404468 - L1PA5 LINE L1 -18 6136 6081 11006 239 54 22 chr6 94010774 94016718 -88398524 + L1PB4 LINE L1 380 6510 -349 252 0 0 0 chr6 94016718 94016746 -88398496 + (CA)n Simple_repeat Simple_repeat 2 29 0 11006 239 54 22 chr6 94016746 94017083 -88398159 + L1PB4 LINE L1 6510 6835 -24 1225 135 14 27 chr6 94017205 94017427 -88397815 + L1PB1 LINE L1 2 220 -6643 * 18984 167 20 27 chr6 94017415 94021345 -88393897 - L1P3 LINE L1 -1757 4704 786 1608 139 0 4 chr6 94021334 94021572 -88393670 - L1P3 LINE L1 -5638 237 1 * 13142 210 38 23 chr6 94021606 94023835 -88391407 + L1PB1 LINE L1 2156 4350 -2517 210 37 0 0 chr6 94023835 94023862 -88391380 + (CAA)n Simple_repeat Simple_repeat 2 28 0 13142 210 38 23 chr6 94023862 94024051 -88391191 + L1PB1 LINE L1 4350 4535 -2332 5585 46 18 12 chr6 94024051 94024790 -88390452 + L1PA4 LINE L1 5413 6155 0 13142 210 38 23 chr6 94024790 94025701 -88389541 + L1PB1 LINE L1 4535 5431 -1436 533 0 45 0 chr6 94025701 94025768 -88389474 + (GAGAA)n Simple_repeat Simple_repeat 4 73 0 13142 210 38 23 chr6 94025768 94027066 -88388176 + L1PB1 LINE L1 5431 6862 -5 363 351 58 0 chr6 94027106 94027297 -88387945 + HAL1 LINE L1 2306 2507 0 1206 244 64 3 chr6 94027469 94027752 -88387490 - AluJo SINE Alu 0 302 3 4069 230 40 18 chr6 94027762 94028871 -88386371 + L1PA15 LINE L1 1238 2382 -4415 7259 221 148 32 chr6 94029693 94031033 -88384209 + L1PA15 LINE L1 2363 3546 -3270 2359 70 40 0 chr6 94031033 94031331 -88383911 + AluY SINE Alu 1 310 -1 7259 221 148 32 chr6 94031331 94033916 -88381326 + L1PA15 LINE L1 3546 6803 -13 186 43 0 0 chr6 94034422 94034445 -88380797 + (TA)n Simple_repeat Simple_repeat 1 23 0 273 196 0 0 chr6 94034572 94034628 -88380614 - L1M4 LINE L1 -2465 3681 3626 500 250 6 88 chr6 94034639 94034799 -88380443 + MLT1J LTR MaLR 27 173 -338 13495 186 79 10 chr6 94034839 94040659 -88374583 + L1P5 LINE L1 138 6339 -528 2066 134 3 7 chr6 94040964 94041269 -88373973 - AluY SINE Alu -7 304 1 530 298 88 15 chr6 94041311 94041516 -88373726 - MIR SINE MIR 0 262 43 320 294 64 72 chr6 94041451 94041686 -88373556 + MIR SINE MIR 18 250 -12 * 1873 251 128 4 chr6 94041846 94042337 -88372905 + MLT1H1 LTR MaLR 1 552 -3 24 32 0 0 chr6 94043187 94043218 -88372024 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr6 94043594 94043641 -88371601 + AT_rich Low_complexity Low_complexity 1 47 0 22 70 0 0 chr6 94043744 94043787 -88371455 + AT_rich Low_complexity Low_complexity 1 43 0 1572 221 3 7 chr6 94043957 94044256 -88370986 - AluJo SINE Alu -14 298 1 1612 130 92 31 chr6 94044336 94044629 -88370613 + AluSq SINE Alu 1 311 -2 4788 40 0 2 chr6 94044686 94045268 -88369974 - L1PA4 LINE L1 -2 6153 5573 294 298 48 48 chr6 94045815 94045983 -88369259 + HAL1b LINE L1 395 562 -786 703 214 7 19 chr6 94046651 94046805 -88368437 + AluJo SINE Alu 1 152 -160 14547 74 1 1 chr6 94046805 94048678 -88366564 + L1P LINE L1 8 1881 -4265 2397 112 0 3 chr6 94048813 94049162 -88366080 + L1PB1 LINE L1 5796 6143 -8 235 308 116 27 chr6 94049168 94049314 -88365928 + MLT1J LTR MaLR 223 381 -130 341 300 23 15 chr6 94049347 94049477 -88365765 + MLT1J LTR MaLR 381 511 0 330 331 44 16 chr6 94049479 94049727 -88365515 - L1M4 LINE L1 -2522 3624 3370 182 370 110 10 chr6 94050356 94050456 -88364786 - MIR3 SINE MIR -91 117 8 21 36 0 0 chr6 94052391 94052419 -88362823 + AT_rich Low_complexity Low_complexity 1 28 0 1787 29 0 0 chr6 94052608 94052816 -88362426 + L1PA3 LINE L1 5945 6152 -3 6311 215 44 10 chr6 94054029 94054227 -88361015 + L1M2a LINE L1 949 1139 -6029 201 39 0 0 chr6 94054227 94054253 -88360989 + (CTG)n Simple_repeat Simple_repeat 1 26 0 6311 215 44 10 chr6 94054253 94055891 -88359351 + L1M2a LINE L1 1139 2864 -4304 3000 257 62 45 chr6 94055900 94056295 -88358947 + L1M2 LINE L1 1989 2376 -4791 1351 175 76 52 chr6 94056295 94056586 -88358656 + AluJo SINE Alu 3 300 -12 3000 257 62 45 chr6 94056586 94057725 -88357517 + L1M2 LINE L1 2376 3564 -3603 337 159 14 14 chr6 94057731 94057800 -88357442 + L1PA7 LINE L1 4 72 -6389 29772 124 11 56 chr6 94057983 94064407 -88350835 + L1PA7 LINE L1 327 6454 -15 23 54 0 0 chr6 94064407 94064444 -88350798 + AT_rich Low_complexity Low_complexity 1 37 0 3708 244 35 74 chr6 94064870 94066349 -88348893 + L1M2 LINE L1 3560 4981 -2186 42400 38 2 38 chr6 94066357 94072745 -88342497 + L1PA2 LINE L1 2 6152 -3 242 306 62 61 chr6 94073223 94073408 -88341834 + MIR SINE MIR 23 206 -56 4672 58 24 18 chr6 94074988 94076017 -88339225 - MER11A LTR ERVK 0 1266 1 21 0 0 0 chr6 94076197 94076218 -88339024 + AT_rich Low_complexity Low_complexity 1 21 0 2135 96 25 32 chr6 94078092 94078406 -88336836 + AluSx SINE Alu 1 312 0 1792 168 34 0 chr6 94078848 94079140 -88336102 - AluJb SINE Alu -10 302 1 1507 126 0 0 chr6 94079273 94079479 -88335763 - AluSg/x SINE Alu -8 304 99 2134 156 8 38 chr6 94079620 94080018 -88335224 - MLT1B LTR MaLR 0 390 5 5822 98 26 10 chr6 94080773 94081712 -88333530 + L1PA15 LINE L1 5198 6150 -15 379 257 0 20 chr6 94082367 94082468 -88332774 - MIR SINE MIR -3 259 161 1548 143 12 78 chr6 94082582 94082904 -88332338 - MER50 LTR ERV1 -1 733 433 280 176 54 27 chr6 94082887 94082961 -88332281 - MER50 LTR ERV1 -494 240 165 * 3517 39 2 2 chr6 94083383 94083816 -88331426 - L1PA4 LINE L1 -144 6011 5579 669 47 0 0 chr6 94083809 94083894 -88331348 + L1P LINE L1 2696 2780 -3366 * 2052 147 0 9 chr6 94083893 94084240 -88331002 - L1P LINE L1 -1958 4503 4160 * 12133 126 6 22 chr6 94084229 94086396 -88328846 - L1P3 LINE L1 -4310 2151 8 9446 160 71 6 chr6 94086526 94088720 -88326522 - L1M1 LINE L1 -743 5403 3206 1438 97 5 14 chr6 94088820 94089036 -88326206 + L1PA7 LINE L1 5938 6151 -3 3835 122 23 2 chr6 94089036 94089644 -88325598 + L1MA2 LINE L1 5683 6304 0 12210 188 36 21 chr6 94089670 94093855 -88321387 + L1MEc LINE L1 2161 6372 0 367 375 10 5 chr6 94094037 94094237 -88321005 + HERV16 LTR ERVL 2612 2812 -2184 329 77 19 0 chr6 94094259 94094311 -88320931 - MER2 DNA MER2_type -144 201 149 3486 205 64 6 chr6 94096479 94097904 -88317338 - L1MB7 LINE L1 -120 6562 5052 1692 125 15 116 chr6 94097905 94098242 -88317000 - THE1B LTR MaLR 0 364 62 965 230 26 15 chr6 94098244 94098514 -88316728 - L1MB7 LINE L1 -4879 1663 1391 337 20 0 100 chr6 94098516 94098566 -88316676 - THE1B LTR MaLR -330 45 1 450 208 62 8 chr6 94098568 94098698 -88316544 - L1M4 LINE L1 -1594 4552 4416 288 312 93 28 chr6 94098790 94099114 -88316128 - L1MEc LINE L1 -4318 2078 1734 293 338 105 24 chr6 94100089 94100278 -88314964 + MIR SINE MIR 23 232 -30 2417 81 0 0 chr6 94100278 94100585 -88314657 + AluY SINE Alu 1 307 -4 293 338 105 24 chr6 94100585 94100605 -88314637 + MIR SINE MIR 232 249 -13 25 0 0 0 chr6 94100823 94100848 -88314394 + AT_rich Low_complexity Low_complexity 1 25 0 1612 187 107 16 chr6 94101289 94101652 -88313590 - MSTD LTR MaLR 0 396 1 186 43 0 0 chr6 94101929 94101952 -88313290 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 686 333 80 37 chr6 94102146 94102548 -88312694 - L3 LINE CR1 -270 1307 889 24 0 0 0 chr6 94102549 94102573 -88312669 + AT_rich Low_complexity Low_complexity 1 24 0 1532 137 9 0 chr6 94102594 94102821 -88312421 + AluSq SINE Alu 3 231 -82 3772 168 24 28 chr6 94102921 94103990 -88311252 - L1MA8 LINE L1 -263 6028 4963 189 319 110 11 chr6 94104053 94104144 -88311098 + L2 LINE L2 3154 3253 -19 390 391 65 5 chr6 94104179 94104394 -88310848 - L3 LINE CR1 -794 783 556 414 307 47 20 chr6 94104754 94104904 -88310338 + MIR SINE MIR 61 214 -48 2098 192 43 5 chr6 94106204 94106620 -88308622 - MSTB1 LTR MaLR 0 432 1 464 318 86 15 chr6 94106625 94106823 -88308419 + MIR SINE MIR 2 213 -49 428 294 28 28 chr6 94107539 94107753 -88307489 - L1ME LINE L1 -302 5819 5606 1566 80 0 9 chr6 94108556 94108782 -88306460 + L1PA8 LINE L1 5939 6162 -10 574 225 100 0 chr6 94109561 94109721 -88305521 + MER5B DNA MER1_type 1 176 -2 48 0 0 0 chr6 94112099 94112147 -88303095 + AT_rich Low_complexity Low_complexity 1 48 0 232 194 104 30 chr6 94112508 94112575 -88302667 - L2 LINE L2 0 3272 3201 28 0 0 0 chr6 94113453 94113481 -88301761 + AT_rich Low_complexity Low_complexity 1 28 0 334 276 156 47 chr6 94114065 94114383 -88300859 - HAL1 LINE L1 -964 1543 1180 8774 32 1 0 chr6 94114383 94116214 -88299028 - L1PA3 LINE L1 0 6155 4324 334 276 156 47 chr6 94116214 94116254 -88298988 - HAL1 LINE L1 -1327 1180 1146 349 261 11 0 chr6 94116470 94116558 -88298684 - HAL1 LINE L1 -1624 883 795 775 173 0 0 chr6 94116608 94116741 -88298501 - FRAM SINE Alu -4 172 40 1357 77 22 0 chr6 94116741 94116924 -88298318 - L1PA8A LINE L1 -134 5997 5811 875 194 71 0 chr6 94116925 94117095 -88298147 + MER58A DNA MER1_type 43 224 0 354 328 60 37 chr6 94117310 94117444 -88297798 - L2 LINE L2 -19 3253 3117 287 276 0 13 chr6 94117523 94117599 -88297643 + HAL1 LINE L1 12 86 -2421 220 292 0 22 chr6 94117599 94117688 -88297554 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 1253 185 76 0 chr6 94117713 94118019 -88297223 + L1ME LINE L1 5217 5542 -620 1062 203 48 105 chr6 94118025 94118400 -88296842 + MLT2B1 LTR ERVL 1 349 -65 820 94 18 12 chr6 94118400 94118570 -88296672 + (TA)n Simple_repeat Simple_repeat 1 171 0 1062 203 48 105 chr6 94118570 94118633 -88296609 + MLT2B1 LTR ERVL 349 414 0 7968 221 51 31 chr6 94118656 94120485 -88294757 + ERVL-B1 LTR ERVL 22 1887 -3877 1514 122 36 0 chr6 94171116 94171338 -88243904 + MER30 DNA MER1_type 1 230 0 281 278 127 48 chr6 94173901 94174153 -88241089 + MLT1J2 LTR MaLR 179 450 0 314 295 217 30 chr6 94174675 94174841 -88240401 - MIR SINE MIR -65 197 1 21 36 0 0 chr6 94175502 94175530 -88239712 + AT_rich Low_complexity Low_complexity 1 28 0 539 304 94 41 chr6 94175643 94175982 -88239260 - L1ME4a LINE L1 -219 5902 5546 29 28 0 0 chr6 94176002 94176038 -88239204 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr6 94176173 94176197 -88239045 + AT_rich Low_complexity Low_complexity 1 24 0 231 289 25 50 chr6 94176634 94176793 -88238449 - HAL1b LINE L1 -684 664 510 837 202 14 46 chr6 94177540 94177758 -88237484 - MER20 DNA MER1_type -6 213 3 390 42 0 0 chr6 94178994 94179042 -88236200 + (TC)n Simple_repeat Simple_repeat 1 48 0 35754 85 12 6 chr6 94179502 94185616 -88229626 - L1PA6 LINE L1 0 6154 11 404 210 94 29 chr6 94185921 94186059 -88229183 - HAL1 LINE L1 -4 2503 2357 22 88 0 0 chr6 94186464 94186521 -88228721 + AT_rich Low_complexity Low_complexity 1 57 0 319 340 140 0 chr6 94186600 94186800 -88228442 - L1ME3A LINE L1 -300 5870 5643 225 265 59 59 chr6 94187084 94187220 -88228022 + MLT1H LTR MaLR 382 517 -32 395 158 98 12 chr6 94187237 94187315 -88227927 + MLT1A2 LTR MaLR 1 85 -289 3228 193 62 36 chr6 94187315 94188060 -88227182 + MER21B LTR ERV1 1 764 -99 2885 144 20 2 chr6 94188068 94188575 -88226667 + Tigger1 DNA MER2_type 870 1385 -1033 307 273 9 64 chr6 94188575 94188685 -88226557 - L1PA13 LINE L1 -5585 1202 1099 5162 201 52 22 chr6 94188691 94189718 -88225524 - L1PA13 LINE L1 -5730 1057 1 1762 164 39 21 chr6 94189752 94190087 -88225155 - MER7A DNA MER2_type -5 341 3 25067 46 4 0 chr6 94191123 94196966 -88218276 - L1PA4 LINE L1 -8 6147 282 3991 129 104 78 chr6 94196969 94198304 -88216938 - pTR5 LTR ERV1 0 2438 743 2067 93 0 0 chr6 94198304 94198583 -88216659 - L1P LINE L1 -5861 285 7 1880 181 43 43 chr6 94198739 94199158 -88216084 - MSTB1 LTR MaLR -13 419 1 255 258 270 0 chr6 94199278 94199367 -88215875 - MER5A DNA MER1_type 0 189 77 983 165 6 6 chr6 94200210 94200386 -88214856 + LTR8 LTR ERV1 1 176 -515 682 178 20 26 chr6 94200384 94200536 -88214706 - LTR8 LTR ERV1 -119 572 422 * 1852 166 24 15 chr6 94200593 94201205 -88214037 + LTR8 LTR ERV1 15 691 0 1902 253 66 31 chr6 94201223 94201796 -88213446 + MLT1E LTR MaLR 1 593 0 197 226 145 0 chr6 94202592 94202654 -88212588 - MIR SINE MIR -111 151 81 297 307 180 7 chr6 94203658 94203808 -88211434 + MIR3 SINE MIR 30 205 -3 6942 56 0 0 chr6 94206117 94207212 -88208030 - L1PA7 LINE L1 0 6154 5057 1049 245 146 30 chr6 94207530 94207996 -88207246 - L1ME3 LINE L1 0 6162 5643 1333 223 24 132 chr6 94208093 94208587 -88206655 - L1MD2 LINE L1 -14 6228 5788 437 318 34 0 chr6 94209025 94209173 -88206069 - MIR SINE MIR -49 213 61 465 262 91 58 chr6 94209187 94209555 -88205687 - MLT1H1 LTR MaLR -156 417 1 453 300 46 17 chr6 94210120 94210357 -88204885 - MARNA DNA Mariner -282 304 61 1933 120 43 30 chr6 94210569 94210893 -88204349 + AluSx SINE Alu 1 312 0 252 0 0 0 chr6 94211741 94211769 -88203473 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 22 35 0 0 chr6 94212902 94212931 -88202311 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr6 94213008 94213042 -88202200 + (TTA)n Simple_repeat Simple_repeat 3 36 0 19300 103 6 5 chr6 94213042 94216645 -88198597 - L1PA7 LINE L1 -18 6451 2844 5854 45 1 12 chr6 94216702 94217434 -88197808 - L1PA4 LINE L1 0 6155 5432 11545 130 10 56 chr6 94217434 94220317 -88194925 - L1PA7 LINE L1 -3601 2860 1 7268 240 57 24 chr6 94221218 94222273 -88192969 + L1M2a LINE L1 1614 2633 -4534 2368 176 34 0 chr6 94222273 94222683 -88192559 - MSTA LTR MaLR -4 424 1 7268 240 57 24 chr6 94222683 94225439 -88189803 + L1M2a LINE L1 2633 5249 -1918 2000 144 0 7 chr6 94225439 94225724 -88189518 + AluSx SINE Alu 1 283 -29 7268 240 57 24 chr6 94225724 94225906 -88189336 + L1M2a LINE L1 5249 5424 -1743 11900 144 39 29 chr6 94225922 94229289 -88185953 + L1M1 LINE L1 17 3567 -3998 1583 262 21 2 chr6 94229315 94229799 -88185443 + L1M1 LINE L1 3640 4132 -3433 26 0 0 0 chr6 94229799 94229825 -88185417 + AT_rich Low_complexity Low_complexity 1 26 0 256 89 111 0 chr6 94229828 94229873 -88185369 - L1PA16 LINE L1 -2 6164 6115 1932 33 0 16 chr6 94229879 94230121 -88185121 - L1PA3 LINE L1 -5 6150 5913 434 120 40 0 chr6 94230166 94230241 -88185001 - MADE1 DNA Mariner -2 78 1 427 124 41 10 chr6 94230246 94230343 -88184899 + L1MB2 LINE L1 6070 6169 -2 7395 174 20 7 chr6 94230644 94232671 -88182571 + L1M1 LINE L1 5154 7202 -521 1340 131 8 34 chr6 94232692 94232748 -88182494 + MER57A LTR ERV1 1 57 -346 2004 137 39 36 chr6 94232748 94233107 -88182135 - THE1B LTR MaLR -4 360 1 1340 131 8 34 chr6 94233107 94233286 -88181956 + MER57A LTR ERV1 57 230 -173 25774 116 42 29 chr6 94233286 94238232 -88177010 + MER57-int LTR ERV1 1185 6896 -641 23765 39 5 0 chr6 94238332 94241409 -88173833 - L1P LINE L1 -1562 4584 1494 16510 87 30 3 chr6 94241509 94244076 -88171166 - L1P LINE L1 -743 5403 2787 32332 76 4 6 chr6 94244176 94249123 -88166119 - L1P LINE L1 -1193 4953 3 342 122 0 122 chr6 94249124 94249163 -88166079 + MSTA LTR MaLR 354 381 -47 1672 155 68 0 chr6 94249163 94249463 -88165779 - AluSq SINE Alu 0 319 2 342 122 0 122 chr6 94249463 94249504 -88165738 + MSTA LTR MaLR 381 425 -3 852 281 13 4 chr6 94249667 94249898 -88165344 - MER45B DNA AcHobo -778 262 30 32 0 0 0 chr6 94250662 94250694 -88164548 + AT_rich Low_complexity Low_complexity 1 32 0 1810 129 31 94 chr6 94250763 94251144 -88164098 - THE1B LTR MaLR -7 357 1 10289 123 39 3 chr6 94251144 94252668 -88162574 - THE1B-int LTR MaLR 0 1580 1 2367 123 8 35 chr6 94252668 94253042 -88162200 - THE1B LTR MaLR 0 364 1 616 306 5 24 chr6 94253397 94253606 -88161636 + MER63A DNA MER1_type 1 205 -5 441 295 95 20 chr6 94253932 94254132 -88161110 + L3 LINE CR1 787 1001 -576 510 245 92 0 chr6 94254151 94254314 -88160928 + MER5B DNA MER1_type 1 178 0 290 254 15 15 chr6 94254384 94254451 -88160791 - MER5A DNA MER1_type -83 106 40 995 342 92 11 chr6 94254476 94254999 -88160243 + L3 LINE CR1 1007 1571 -6 281 306 0 0 chr6 94256299 94256397 -88158845 + L1M4 LINE L1 4500 4597 -1549 2163 229 43 2 chr6 94256732 94257217 -88158025 - MLT1D LTR MaLR 0 505 1 434 345 61 12 chr6 94257264 94257675 -88157567 + L1ME LINE L1 214 644 -5919 209 349 0 0 chr6 94257847 94257930 -88157312 + A-rich Low_complexity Low_complexity 1 83 0 399 201 63 134 chr6 94257996 94258250 -88156992 + MLT1J LTR MaLR 268 503 -8 474 288 91 34 chr6 94258382 94259086 -88156156 + L1ME LINE L1 5142 5888 -755 250 237 21 0 chr6 94259212 94259305 -88155937 + L1ME LINE L1 5961 6055 -302 484 264 27 0 chr6 94259360 94259470 -88155772 + L2 LINE L2 3200 3312 -1 319 337 66 42 chr6 94260174 94260340 -88154902 + L2 LINE L2 3103 3272 0 309 274 29 103 chr6 94261430 94261605 -88153637 + MIR3 SINE MIR 43 204 -4 203 244 0 0 chr6 94262007 94262048 -88153194 + MIR SINE MIR 112 152 -110 1167 243 89 30 chr6 94262477 94262872 -88152370 - LTR52 LTR ERVL 0 421 4 1078 267 109 56 chr6 94263301 94263734 -88151508 - MLT1F LTR MaLR -7 535 118 535 89 13 0 chr6 94263734 94263813 -88151429 + MADE1 DNA Mariner 1 80 0 1078 267 109 56 chr6 94263813 94263930 -88151312 - MLT1F LTR MaLR -424 118 9 189 94 0 0 chr6 94264424 94264456 -88150786 + (CA)n Simple_repeat Simple_repeat 1 32 0 360 257 33 27 chr6 94264656 94264839 -88150403 - L1ME LINE L1 -390 5731 5548 26 50 0 0 chr6 94264902 94264942 -88150300 + AT_rich Low_complexity Low_complexity 1 40 0 387 129 0 0 chr6 94264948 94265018 -88150224 + L1MA3 LINE L1 6235 6304 -1 4384 176 41 6 chr6 94265984 94266929 -88148313 + L1MEc LINE L1 1106 2083 -4301 1472 157 79 23 chr6 94266942 94267285 -88147957 + THE1C LTR MaLR 14 375 0 1763 183 33 35 chr6 94267285 94267479 -88147763 + L1MEc LINE L1 2077 2270 -4112 2346 107 3 3 chr6 94267479 94267787 -88147455 + AluSq SINE Alu 1 308 -5 1763 183 33 35 chr6 94267787 94268475 -88146767 + L1MEc LINE L1 2270 2964 -3418 * 2550 184 27 0 chr6 94268474 94268995 -88146247 + L1MB3 LINE L1 5492 6026 -157 866 226 29 55 chr6 94268996 94269270 -88145972 + MLT1A1 LTR MaLR 4 270 -95 961 151 92 0 chr6 94269272 94269457 -88145785 - MSTB LTR MaLR 0 426 225 1658 198 30 43 chr6 94269459 94269828 -88145414 + THE1B LTR MaLR 1 364 0 10795 121 15 2 chr6 94269829 94271387 -88143855 + THE1B-int LTR MaLR 2 1580 0 1775 150 32 41 chr6 94271387 94271721 -88143521 + THE1B LTR MaLR 1 333 -31 2224 124 3 0 chr6 94271721 94272028 -88143214 - AluSg1 SINE Alu -1 308 1 832 237 84 0 chr6 94272091 94272281 -88142961 - MSTB LTR MaLR -220 206 1 5589 206 77 36 chr6 94272281 94273797 -88141445 - MSTB-int LTR MaLR 0 1580 3 2033 187 65 2 chr6 94273799 94274200 -88141042 - MSTB LTR MaLR 0 426 1 227 150 25 0 chr6 94274200 94274240 -88141002 + THE1B LTR MaLR 411 451 -6 611 200 31 12 chr6 94274246 94274406 -88140836 + L1MB3 LINE L1 6019 6181 -2 684 182 30 28 chr6 94276299 94276443 -88138799 + MLT1B LTR MaLR 1 143 -247 2057 134 0 3 chr6 94276443 94276735 -88138507 + AluSg SINE Alu 1 291 -19 684 182 30 28 chr6 94276735 94276854 -88138388 + MLT1B LTR MaLR 143 299 -91 6133 148 23 41 chr6 94276958 94277980 -88137262 + Tigger3b DNA MER2_type 14 1010 -2018 1755 178 36 0 chr6 94277980 94278311 -88136931 - MER2 DNA MER2_type -1 343 1 6133 148 23 41 chr6 94278311 94278529 -88136713 + Tigger3b DNA MER2_type 1010 1231 0 1274 248 97 19 chr6 94278666 94279037 -88136205 - LTR40a LTR ERVL -11 508 109 995 204 91 55 chr6 94279052 94279265 -88135977 - MER2 DNA MER2_type -25 320 89 1920 154 4 0 chr6 94279265 94279588 -88135654 - AluSx SINE Alu 0 326 3 995 204 91 55 chr6 94279588 94279681 -88135561 - MER2 DNA MER2_type -256 89 1 468 135 90 0 chr6 94279690 94279779 -88135463 - LTR40a LTR ERVL -422 97 1 3021 265 68 31 chr6 94280117 94281259 -88133983 + L2 LINE L2 1986 3172 -141 421 238 31 81 chr6 94281312 94281472 -88133770 + L2 LINE L2 3126 3277 -36 2868 265 55 9 chr6 94282044 94282907 -88132335 + L2 LINE L2 1919 2820 -494 1071 209 132 12 chr6 94282907 94283247 -88131995 - L1MCc LINE L1 -5151 1272 892 663 234 57 74 chr6 94283531 94283950 -88131292 - L1MCc LINE L1 -5988 435 24 338 266 32 71 chr6 94284089 94284243 -88130999 - MLT1J2 LTR MaLR -4 446 299 251 53 0 26 chr6 94284293 94284331 -88130911 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 549 222 116 20 chr6 94284336 94284534 -88130708 - MLT1J2 LTR MaLR -233 217 1 563 270 86 58 chr6 94284554 94284880 -88130362 + L1ME4a LINE L1 5769 6103 -18 189 281 42 52 chr6 94285386 94285482 -88129760 + L2 LINE L2 2627 2721 -593 239 309 36 36 chr6 94285659 94285798 -88129444 - L2 LINE L2 -459 2855 2717 21 36 0 0 chr6 94285980 94286008 -88129234 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 94286300 94286321 -88128921 + AT_rich Low_complexity Low_complexity 1 21 0 504 328 50 6 chr6 94287330 94287510 -88127732 + MIR3 SINE MIR 16 203 -5 252 290 11 43 chr6 94287557 94287650 -88127592 + MIR SINE MIR 16 105 -103 712 232 116 77 chr6 94287705 94288181 -88127061 - MLT1H LTR MaLR -3 546 3 503 308 61 19 chr6 94289328 94289557 -88125685 + MIR SINE MIR 3 241 -21 293 293 36 31 chr6 94290558 94290689 -88124553 - MIR SINE MIR -65 143 56 215 361 10 21 chr6 94291706 94291803 -88123439 - MIR3 SINE MIR -5 203 108 5028 128 20 3 chr6 94292110 94293113 -88122129 - L1MA3 LINE L1 0 7724 6571 1957 157 0 4 chr6 94293129 94293409 -88121833 - AluSx SINE Alu -23 289 11 18664 174 42 12 chr6 94293418 94293636 -88121606 - L1MA3 LINE L1 -971 6594 6384 2099 137 33 38 chr6 94293636 94294002 -88121240 + THE1B LTR MaLR 1 364 0 11267 106 6 2 chr6 94294002 94295574 -88119668 + THE1B-int LTR MaLR 1 1579 -1 1887 177 33 28 chr6 94295575 94295937 -88119305 + THE1B LTR MaLR 1 364 0 18664 174 42 12 chr6 94295937 94302075 -88113167 - L1MA3 LINE L1 -1180 6385 16 238 335 59 13 chr6 94302096 94302248 -88112994 - L2 LINE L2 -27 3286 3128 1998 141 0 16 chr6 94302628 94302934 -88112308 - AluSx SINE Alu -11 301 1 1581 169 85 25 chr6 94303017 94303371 -88111871 - THE1C LTR MaLR 0 375 1 360 287 72 32 chr6 94305161 94305323 -88109919 + MIR3 SINE MIR 4 170 -64 1671 264 58 25 chr6 94305377 94305968 -88109274 + MLT2F LTR ERVL 11 620 -43 269 161 0 18 chr6 94306038 94306094 -88109148 + MLT2F LTR ERVL 609 663 0 1756 162 20 14 chr6 94306232 94306529 -88108713 - AluJb SINE Alu -13 299 1 47 33 0 0 chr6 94306689 94306750 -88108492 + AT_rich Low_complexity Low_complexity 1 61 0 235 280 69 69 chr6 94307398 94307587 -88107655 + L2 LINE L2 2201 2389 -925 * 287 318 56 16 chr6 94307579 94307699 -88107543 - L2 LINE L2 0 3313 3189 181 275 0 0 chr6 94307699 94307739 -88107503 - MER5B DNA MER1_type 0 178 139 1526 243 52 9 chr6 94307739 94308283 -88106959 - L1M4 LINE L1 -1503 4643 4077 350 328 167 6 chr6 94308383 94308563 -88106679 + MIR SINE MIR 20 228 -34 369 227 118 18 chr6 94308605 94308715 -88106527 + MIR SINE MIR 69 189 -73 327 189 33 22 chr6 94308838 94308928 -88106314 - MLT1H1 LTR MaLR -7 588 498 371 306 87 57 chr6 94308962 94309328 -88105914 - MLT1H1 LTR MaLR -168 387 11 1360 271 51 25 chr6 94311065 94312043 -88103199 - L1MCc LINE L1 -4778 2163 1121 559 296 19 24 chr6 94312069 94312275 -88102967 - MLT1L LTR MaLR -397 218 14 1285 209 167 82 chr6 94312948 94313278 -88101964 - MSTD LTR MaLR 0 396 8 1946 156 10 0 chr6 94314037 94314332 -88100910 + AluJb SINE Alu 1 298 -14 696 355 60 13 chr6 94314425 94314805 -88100437 + L2 LINE L2 2575 2972 -342 3137 102 17 42 chr6 94314818 94315347 -88099895 - L1MA2 LINE L1 0 6304 5789 2155 167 33 0 chr6 94315347 94315737 -88099505 - MER57A LTR ERV1 0 403 1 1494 96 27 0 chr6 94315737 94315956 -88099286 - MER57A-int LTR ERV1 0 7537 7313 284 0 28 0 chr6 94315958 94315994 -88099248 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6976 66 1 0 chr6 94316094 94317229 -88098013 + L1PA5 LINE L1 5017 6151 -3 1887 163 3 45 chr6 94317229 94317609 -88097633 - MSTA LTR MaLR -64 364 1 8500 191 29 4 chr6 94317609 94319219 -88096023 - MSTA-int LTR MaLR 0 1651 2 1363 192 25 79 chr6 94319220 94319402 -88095840 - MSTA LTR MaLR 0 426 236 2135 144 22 30 chr6 94319402 94319769 -88095473 - THE1B LTR MaLR 0 364 1 10714 118 19 2 chr6 94319771 94321322 -88093920 - THE1B-int LTR MaLR -2 1578 1 1845 126 129 12 chr6 94321322 94321648 -88093594 - THE1B LTR MaLR 0 364 1 1363 192 25 79 chr6 94321648 94321934 -88093308 - MSTA LTR MaLR -189 237 1 1111 217 14 0 chr6 94321952 94322173 -88093069 + MER45B DNA AcHobo 355 578 -462 2244 198 27 4 chr6 94322173 94322687 -88092555 + MER45B DNA AcHobo 515 1040 0 1521 205 16 47 chr6 94323882 94324263 -88090979 + MLT1A2 LTR MaLR 1 369 -5 290 328 72 8 chr6 94324976 94325101 -88090141 + MIR SINE MIR 19 151 -57 2285 71 3 59 chr6 94325126 94325449 -88089793 - AluY SINE Alu -6 305 1 329 200 8 42 chr6 94326038 94326158 -88089084 + T-rich Low_complexity Low_complexity 2 117 0 193 54 0 54 chr6 94326296 94326333 -88088909 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 413 210 15 29 chr6 94326348 94326553 -88088689 + CT-rich Low_complexity Low_complexity 1 202 0 219 348 87 26 chr6 94326865 94326980 -88088262 - L2 LINE L2 -17 3255 3134 284 287 83 38 chr6 94327093 94327250 -88087992 - L2 LINE L2 -213 3059 2896 217 333 11 21 chr6 94327423 94327516 -88087726 - L2 LINE L2 -619 2695 2604 491 255 213 0 chr6 94327804 94327945 -88087297 + MER5A DNA MER1_type 17 187 -2 2641 50 0 0 chr6 94328775 94329098 -88086144 - L1PA5 LINE L1 -2 6152 5830 2088 20 0 0 chr6 94329098 94329346 -88085896 + L1PA5 LINE L1 5562 5809 -345 259 217 157 9 chr6 94329786 94329901 -88085341 + MIR SINE MIR 7 138 -124 1356 353 76 35 chr6 94330124 94331892 -88083350 + ERVL LTR ERVL 2379 4219 -1545 387 342 82 12 chr6 94331964 94332221 -88083021 + ERVL LTR ERVL 5073 5347 -417 433 185 15 6 chr6 94332876 94332984 -88082258 + MER2 DNA MER2_type 1 108 -131 2257 19 0 0 chr6 94334361 94334619 -88080623 - L1PA3 LINE L1 0 6155 5898 23 0 0 0 chr6 94334703 94334726 -88080516 + AT_rich Low_complexity Low_complexity 1 23 0 417 39 0 0 chr6 94335095 94335146 -88080096 + (TTG)n Simple_repeat Simple_repeat 1 51 0 5180 185 39 8 chr6 94335697 94336737 -88078505 - L1MC1 LINE L1 -7 6326 5244 2021 139 10 3 chr6 94336737 94337046 -88078196 + AluSx SINE Alu 1 311 -1 5180 185 39 8 chr6 94337046 94337203 -88078039 - L1MC1 LINE L1 -1089 5244 5093 22 35 0 0 chr6 94337562 94337591 -88077651 + AT_rich Low_complexity Low_complexity 1 29 0 565 340 115 8 chr6 94337888 94338279 -88076963 + L2 LINE L2 723 1155 -2159 180 287 32 64 chr6 94338604 94338698 -88076544 - L2 LINE L2 -281 3032 2942 225 320 70 16 chr6 94339028 94339156 -88076086 - MIR SINE MIR -57 205 71 336 328 78 0 chr6 94341486 94341602 -88073640 - L2 LINE L2 0 3313 3189 228 333 26 0 chr6 94341655 94341733 -88073509 + MIR SINE MIR 22 101 -161 214 338 48 35 chr6 94341912 94342057 -88073185 + MIR SINE MIR 116 262 0 278 325 61 48 chr6 94342166 94342397 -88072845 + L2 LINE L2 2628 2861 -453 358 182 127 18 chr6 94342402 94342512 -88072730 + MER119 DNA MER1_type 462 583 0 200 33 0 33 chr6 94343385 94343415 -88071827 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 212 244 0 0 chr6 94343546 94343591 -88071651 + CT-rich Low_complexity Low_complexity 2 46 0 1222 166 30 13 chr6 94344027 94344262 -88070980 - LTR58 LTR ERV1 0 679 441 229 244 26 0 chr6 94344254 94344332 -88070910 - LTR43 LTR ERV1 -323 279 200 * 1072 137 86 0 chr6 94344305 94344502 -88070740 - LTR58 LTR ERV1 -299 380 167 388 212 35 0 chr6 94344602 94344687 -88070555 - AluJ/FLAM SINE Alu -214 88 1 184 193 0 35 chr6 94345866 94345923 -88069319 + CT-rich Low_complexity Low_complexity 1 55 0 553 152 11 0 chr6 94346617 94346709 -88068533 + L1MB7 LINE L1 6090 6182 -2 377 306 182 14 chr6 94347031 94347240 -88068002 + MIR SINE MIR 18 261 -1 290 305 0 0 chr6 94348123 94348205 -88067037 + CT-rich Low_complexity Low_complexity 2 83 0 987 313 170 22 chr6 94348399 94349135 -88066107 - L2 LINE L2 -542 2772 1928 186 103 0 0 chr6 94350088 94350117 -88065125 + (T)n Simple_repeat Simple_repeat 1 29 0 222 91 0 0 chr6 94351904 94351937 -88063305 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 182 0 0 chr6 94351961 94352016 -88063226 + T-rich Low_complexity Low_complexity 1 55 0 1765 132 54 27 chr6 94352768 94353064 -88062178 + 7SLRNA srpRNA srpRNA 2 305 -15 228 235 0 0 chr6 94353065 94353116 -88062126 + GA-rich Low_complexity Low_complexity 3 53 0 649 367 70 26 chr6 94353202 94353976 -88061266 - L2 LINE L2 -1635 1679 872 521 330 77 10 chr6 94354164 94354358 -88060884 + MIR SINE MIR 13 219 -43 701 237 8 0 chr6 94354358 94354489 -88060753 + FLAM_C SINE Alu 2 133 -10 184 213 0 43 chr6 94354491 94354538 -88060704 + MIR SINE MIR 218 262 0 222 281 167 26 chr6 94354601 94354715 -88060527 - MIR3 SINE MIR -64 144 15 332 203 0 14 chr6 94355355 94355424 -88059818 - MER5A DNA MER1_type 0 189 122 322 206 73 0 chr6 94355615 94355683 -88059559 + MER5A DNA MER1_type 7 79 -110 802 313 176 45 chr6 94355770 94356032 -88059210 + L3 LINE CR1 620 846 -731 2223 92 0 30 chr6 94356032 94356335 -88058907 - AluY SINE Alu -17 294 1 802 313 176 45 chr6 94356335 94356897 -88058345 + L3 LINE CR1 846 1552 -25 22 35 0 0 chr6 94357310 94357339 -88057903 + AT_rich Low_complexity Low_complexity 1 29 0 399 329 17 56 chr6 94357347 94357581 -88057661 - L1ME4a LINE L1 -69 6035 1180 1708 209 46 3 chr6 94357652 94358002 -88057240 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr6 94358425 94358460 -88056782 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr6 94358528 94358552 -88056690 + (TA)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chr6 94358589 94358619 -88056623 + AT_rich Low_complexity Low_complexity 1 30 0 249 293 53 0 chr6 94358736 94358811 -88056431 - L1ME LINE L1 -302 5819 5741 1262 226 119 35 chr6 94358848 94359225 -88056017 + MLT1E2 LTR MaLR 218 626 0 203 224 0 69 chr6 94359334 94359392 -88055850 + MER5A DNA MER1_type 31 84 -105 593 214 121 0 chr6 94359396 94359536 -88055706 + MIR SINE MIR 82 238 -24 865 279 118 29 chr6 94359774 94360258 -88054984 - L1ME4a LINE L1 -5258 861 335 687 259 56 36 chr6 94360279 94360530 -88054712 + L1ME3 LINE L1 4034 4289 -1857 306 171 0 122 chr6 94360538 94360620 -88054622 + MER39 LTR ERV1 1 72 -859 1215 151 45 113 chr6 94360732 94361078 -88054164 + MER39 LTR ERV1 62 470 -237 1745 201 134 87 chr6 94361079 94361258 -88053984 - MER50 LTR ERV1 0 734 565 2283 110 0 0 chr6 94361258 94361557 -88053685 + AluSg SINE Alu 1 299 -11 1745 201 134 87 chr6 94361557 94362069 -88053173 - MER50 LTR ERV1 -169 565 10 2616 169 68 43 chr6 94362075 94362678 -88052564 + MER21B LTR ERV1 317 863 0 2015 246 50 52 chr6 94362682 94363127 -88052115 + L1ME3 LINE L1 4303 4747 -1399 2694 213 99 59 chr6 94363127 94363921 -88051321 - LTR1B LTR ERV1 0 826 1 2015 246 50 52 chr6 94363921 94364342 -88050900 + L1ME3 LINE L1 4747 5167 -979 3544 214 58 25 chr6 94365010 94365987 -88049255 + L1ME3 LINE L1 5154 6162 0 21 0 0 0 chr6 94366248 94366269 -88048973 + AT_rich Low_complexity Low_complexity 1 21 0 1614 140 88 13 chr6 94367044 94367351 -88047891 - L1MA4 LINE L1 0 6300 5971 1253 119 5 16 chr6 94367428 94367621 -88047621 - L1MA4 LINE L1 -335 5965 5775 257 214 60 0 chr6 94367622 94367706 -88047536 + (TA)n Simple_repeat Simple_repeat 2 90 0 496 289 121 0 chr6 94367706 94367896 -88047346 + LTR33 LTR ERVL 309 521 0 455 360 17 0 chr6 94368144 94368316 -88046926 + MIR3 SINE MIR 19 193 -15 23 0 0 0 chr6 94368781 94368804 -88046438 + AT_rich Low_complexity Low_complexity 1 23 0 2885 80 6 0 chr6 94369107 94369458 -88045784 + THE1A LTR MaLR 3 355 0 5248 114 4 0 chr6 94369459 94370184 -88045058 + THE1A-int LTR MaLR 2 729 -851 2055 88 4 0 chr6 94370169 94370432 -88044810 + THE1A-int LTR MaLR 1317 1580 0 * 2565 136 3 0 chr6 94370432 94370786 -88044456 + THE1A LTR MaLR 1 355 0 216 0 0 0 chr6 94370834 94370858 -88044384 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2377 354 38 24 chr6 94370929 94371674 -88043568 + MER21B LTR ERV1 1 755 -108 666 217 113 28 chr6 94372865 94373077 -88042165 - L2 LINE L2 -1 3312 3083 640 280 100 21 chr6 94373114 94373443 -88041799 + L1ME3A LINE L1 5283 5637 -533 1117 249 79 31 chr6 94373461 94373842 -88041400 - MLT1I LTR MaLR -10 399 1 437 306 129 0 chr6 94373843 94374098 -88041144 + L1ME3A LINE L1 5643 5930 -240 24 32 0 0 chr6 94374240 94374271 -88040971 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr6 94374271 94374294 -88040948 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1176 172 9 21 chr6 94374298 94374544 -88040698 - MLT1A1 LTR MaLR -29 345 99 281 164 182 0 chr6 94374544 94374599 -88040643 + MER39 LTR ERV1 1 65 -642 731 204 185 27 chr6 94374616 94375015 -88040227 + LTR48 LTR ERV1 157 720 -67 2707 96 133 2 chr6 94375015 94375413 -88039829 + LTR7 LTR ERV1 1 450 0 731 204 185 27 chr6 94375413 94375435 -88039807 + LTR48 LTR ERV1 720 737 -50 336 265 98 29 chr6 94375505 94375607 -88039635 - MLT1A1 LTR MaLR -278 112 4 1823 139 182 19 chr6 94376075 94376443 -88038799 + MSTA LTR MaLR 1 428 0 471 184 340 7 chr6 94376558 94376705 -88038537 + LTR59 LTR ERV1 1 196 -401 1395 244 96 27 chr6 94376743 94377148 -88038094 + MER49 LTR ERV1 491 923 0 2166 131 0 0 chr6 94377681 94377971 -88037271 + AluSx SINE Alu 1 290 -22 992 192 5 11 chr6 94377976 94378382 -88036860 + GA-rich Low_complexity Low_complexity 1 403 0 576 250 167 0 chr6 94378395 94378539 -88036703 - MER5A DNA MER1_type -7 182 15 688 271 275 18 chr6 94378543 94378997 -88036245 - MLT1L LTR MaLR -44 571 1 2127 125 3 3 chr6 94379266 94379571 -88035671 + AluSc SINE Alu 1 305 -4 501 324 72 14 chr6 94380073 94380295 -88034947 - MIR SINE MIR 0 262 28 2001 136 83 6 chr6 94380997 94381335 -88033907 + THE1B LTR MaLR 1 364 0 9529 123 53 33 chr6 94381335 94381640 -88033602 + THE1B-int LTR MaLR 1 298 -1282 6182 74 0 0 chr6 94381640 94382399 -88032843 + L1PA8 LINE L1 5412 6170 -2 9529 123 53 33 chr6 94382399 94383642 -88031600 + THE1B-int LTR MaLR 298 1580 0 2152 142 61 9 chr6 94383642 94383988 -88031254 + THE1B LTR MaLR 1 364 0 525 282 98 6 chr6 94384009 94384183 -88031059 - L2 LINE L2 -1 3312 3123 1195 220 142 52 chr6 94384190 94384726 -88030516 - MER34C LTR ERV1 -1 584 1 260 167 0 21 chr6 94384759 94384807 -88030435 - L2 LINE L2 -267 3046 3000 230 163 200 25 chr6 94385776 94385848 -88029394 - LTR48 LTR ERV1 -10 777 688 2009 146 0 0 chr6 94385848 94386135 -88029107 - AluSg SINE Alu -23 287 1 2214 103 13 7 chr6 94386168 94386469 -88028773 - AluSg SINE Alu -7 303 1 1610 178 101 0 chr6 94386469 94386806 -88028436 - LTR48 LTR ERV1 -84 703 333 646 137 10 0 chr6 94386794 94386896 -88028346 + MER57A LTR ERV1 295 397 -6 * 4577 173 28 29 chr6 94386900 94387749 -88027493 + MER31-int LTR ERV1 1 848 -6689 283 244 39 26 chr6 94387845 94387923 -88027319 + MER31-int LTR ERV1 2552 2630 -3701 390 189 40 0 chr6 94387972 94388046 -88027196 + MER34C LTR ERV1 149 225 -360 373 231 0 66 chr6 94388112 94388284 -88026958 + MER31-int LTR ERV1 1098 1199 -3672 255 172 121 0 chr6 94388359 94388417 -88026825 + MER31-int LTR ERV1 3065 3129 -3202 298 227 15 0 chr6 94388449 94388515 -88026727 + MER31-int LTR ERV1 3246 3312 -3019 1955 232 145 20 chr6 94388523 94389166 -88026076 + MER50 LTR ERV1 12 734 0 432 258 0 71 chr6 94389169 94389324 -88025918 + MER31-int LTR ERV1 3312 3455 -2876 433 177 20 54 chr6 94389458 94389605 -88025637 + MER31-int LTR ERV1 1754 1895 -3041 4092 69 65 0 chr6 94389619 94390143 -88025099 + LTR6B LTR ERV1 1 558 0 25088 113 16 1 chr6 94390146 94390662 -88024580 + MER57A-int LTR ERV1 4 511 -8467 207 0 0 0 chr6 94390662 94390685 -88024557 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 25088 113 16 1 chr6 94390685 94393560 -88021682 + MER57A-int LTR ERV1 511 3444 -5534 * 31776 112 1 1 chr6 94393554 94397749 -88017493 + MER57A-int LTR ERV1 4736 8930 -48 3609 77 8 2 chr6 94397749 94398257 -88016985 + LTR6B LTR ERV1 48 558 0 391 265 46 33 chr6 94398257 94398617 -88016625 + MER57A-int LTR ERV1 1952 3090 -1938 441 200 92 8 chr6 94398631 94398761 -88016481 + MER57A-int LTR ERV1 4167 4307 -3813 839 133 0 0 chr6 94398761 94398874 -88016368 + FLAM_C SINE Alu 1 113 -30 5991 158 49 59 chr6 94398902 94399688 -88015554 + MER57A-int LTR ERV1 4409 5176 -2361 1497 181 83 0 chr6 94399688 94399845 -88015397 - AluSx SINE Alu -13 299 156 419 0 20 0 chr6 94399845 94399896 -88015346 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1497 181 83 0 chr6 94399896 94400014 -88015228 - AluSx SINE Alu -156 156 1 5991 158 49 59 chr6 94400014 94400653 -88014589 + MER57A-int LTR ERV1 5176 5820 -1717 6724 166 31 15 chr6 94400978 94402279 -88012963 + MER57A-int LTR ERV1 5825 7147 -390 501 204 23 30 chr6 94402280 94402412 -88012830 + LTR54B LTR ERV1 5 135 -363 1126 192 20 35 chr6 94402412 94402667 -88012575 + MER57A-int LTR ERV1 7287 7537 0 1982 161 36 0 chr6 94402667 94403027 -88012215 + MER57A LTR ERV1 1 373 -30 1426 157 126 15 chr6 94403040 94403365 -88011877 - LTR48 LTR ERV1 -426 361 1 281 360 59 22 chr6 94403763 94404035 -88011207 + LTR16B LTR ERVL 43 324 -140 681 372 19 17 chr6 94404079 94404614 -88010628 + ERVL LTR ERVL 3258 3793 -1971 4063 123 21 39 chr6 94404642 94405215 -88010027 - MER39 LTR ERV1 -2 705 146 5349 155 30 35 chr6 94405215 94406292 -88008950 + MER11C LTR ERVK 1 1071 0 4063 123 21 39 chr6 94406292 94406434 -88008808 - MER39 LTR ERV1 -561 146 3 324 267 0 29 chr6 94406955 94407060 -88008182 + LTR16B LTR ERVL 289 390 -74 1069 223 13 33 chr6 94408402 94408703 -88006539 - LTR22A LTR ERVK 0 458 164 20814 54 7 1 chr6 94408715 94412188 -88003054 - L1PA4 LINE L1 -3 6152 2665 22096 64 2 0 chr6 94412289 94415230 -88000012 - L1P LINE L1 -3198 2948 2 19850 120 15 0 chr6 94415288 94418428 -87996814 - HERVK22 LTR ERVK 0 6837 2325 5371 138 20 6 chr6 94418421 94419311 -87995931 - HERVK22 LTR ERVK -5932 905 3 * 1935 216 11 32 chr6 94419313 94419781 -87995461 - LTR22A LTR ERVK 0 458 1 221 186 23 0 chr6 94420075 94420118 -87995124 - MER5B DNA MER1_type -131 47 4 282 326 55 25 chr6 94420613 94420938 -87994304 - L1ME LINE L1 -449 5672 5338 8455 160 62 15 chr6 94421036 94422780 -87992462 - L1MA3 LINE L1 -8 7716 5767 180 0 0 0 chr6 94422780 94422800 -87992442 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 8455 160 62 15 chr6 94422800 94424001 -87991241 - L1MA3 LINE L1 -1957 5767 4624 2730 19 7 0 chr6 94424011 94424320 -87990922 + AluYa5 SINE Alu 1 311 0 471 265 17 24 chr6 94424608 94424902 -87990340 + AluYa5 SINE Alu 20 311 0 15835 178 29 20 chr6 94424903 94429219 -87986023 - L1MA3 LINE L1 -2936 4629 12 1795 208 121 38 chr6 94429348 94429738 -87985504 - MLT2B1 LTR ERVL 0 520 81 4499 87 51 6 chr6 94429738 94430370 -87984872 + PABL_A LTR ERV1 1 660 0 1795 208 121 38 chr6 94430370 94430459 -87984783 - MLT2B1 LTR ERVL -439 81 1 520 248 149 30 chr6 94430460 94430823 -87984419 + L1ME4a LINE L1 5714 6119 -2 1881 172 24 0 chr6 94430851 94431141 -87984101 + AluSx SINE Alu 1 297 -15 1319 37 0 6 chr6 94431984 94432147 -87983095 - L1PA4 LINE L1 -6 6149 5988 1627 163 26 10 chr6 94432294 94432681 -87982561 - MER7A DNA MER2_type -6 340 3 268 100 67 50 chr6 94434735 94434795 -87980447 - MLT1F LTR MaLR -2 540 480 236 231 92 15 chr6 94435595 94435660 -87979582 + L2 LINE L2 3203 3272 0 2034 140 3 13 chr6 94436677 94436984 -87978258 + AluSq SINE Alu 1 304 -9 602 245 24 36 chr6 94437467 94437678 -87977564 + MLT1E3 LTR MaLR 47 304 -350 195 162 0 0 chr6 94437874 94437911 -87977331 + (CA)n Simple_repeat Simple_repeat 2 38 0 274 140 0 0 chr6 94437911 94437961 -87977281 + MLT2F LTR ERVL 612 661 -2 305 261 17 104 chr6 94438026 94438141 -87977101 - L1ME3A LINE L1 -105 6065 5961 5003 175 46 7 chr6 94438157 94439751 -87975491 - L1PA16 LINE L1 -1 6165 4519 10528 251 23 12 chr6 94439851 94440669 -87974573 - L1PA12 LINE L1 -1381 6203 5396 2270 121 0 0 chr6 94440669 94440975 -87974267 - AluSg SINE Alu -4 306 1 10528 251 23 12 chr6 94440975 94444117 -87971125 - L1PA12 LINE L1 -2188 5396 2179 213 39 0 0 chr6 94444200 94444226 -87971016 + (TTG)n Simple_repeat Simple_repeat 2 27 0 362 280 0 0 chr6 94444333 94444433 -87970809 - L1PA12 LINE L1 -5398 2183 2084 357 360 37 31 chr6 94444554 94445035 -87970207 - L1PA12 LINE L1 -6177 1397 914 464 236 26 62 chr6 94445503 94445698 -87969544 - HAL1 LINE L1 -755 1752 1565 7126 47 0 19 chr6 94445708 94446974 -87968268 - L1PA4 LINE L1 0 6155 4898 18816 46 7 0 chr6 94447320 94450769 -87964473 + L1P1 LINE L1 2295 5762 -393 213 39 0 0 chr6 94450974 94451000 -87964242 + (TTG)n Simple_repeat Simple_repeat 2 27 0 393 280 0 0 chr6 94451107 94451207 -87964035 - L1PA12 LINE L1 -5398 2183 2084 482 356 35 37 chr6 94451317 94451809 -87963433 - L1PA12 LINE L1 -6170 1404 914 515 236 26 62 chr6 94452278 94452473 -87962769 - HAL1 LINE L1 -755 1752 1565 21183 48 6 0 chr6 94452483 94455942 -87959300 - L1PA4 LINE L1 0 6155 2679 5418 57 2 18 chr6 94456092 94457212 -87958030 - L1PA4 LINE L1 -151 6004 4895 214 148 37 0 chr6 94458311 94458365 -87956877 + (TA)n Simple_repeat Simple_repeat 2 57 0 21 0 0 0 chr6 94458657 94458678 -87956564 + AT_rich Low_complexity Low_complexity 1 21 0 522 267 194 0 chr6 94458689 94458880 -87956362 + MIR SINE MIR 13 240 -22 508 347 71 47 chr6 94459396 94459820 -87955422 - LTR67 LTR ERVL 0 557 124 283 93 0 37 chr6 94459825 94459879 -87955363 + (TCC)n Simple_repeat Simple_repeat 2 53 0 608 342 28 21 chr6 94460300 94460727 -87954515 - MERVL LTR ERVL -150 5335 4906 1302 196 134 18 chr6 94460959 94461295 -87953947 + MER63B DNA MER1_type 1 375 -61 251 54 27 0 chr6 94461502 94461539 -87953703 + (TA)n Simple_repeat Simple_repeat 1 38 0 26 30 0 0 chr6 94461547 94461580 -87953662 + AT_rich Low_complexity Low_complexity 1 33 0 472 195 23 0 chr6 94461938 94462025 -87953217 + L2 LINE L2 3184 3272 0 247 255 21 0 chr6 94463013 94463107 -87952135 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 1439 255 56 67 chr6 94463175 94463760 -87951482 + MLT1E LTR MaLR 1 579 -14 392 321 8 30 chr6 94463925 94464059 -87951183 + MIR SINE MIR 32 162 -100 318 379 43 0 chr6 94464486 94464602 -87950640 + L2 LINE L2 3143 3263 -9 240 246 9 18 chr6 94464821 94464935 -87950307 + (TA)n Simple_repeat Simple_repeat 2 114 0 557 250 0 49 chr6 94466161 94466325 -87948917 - L2 LINE L2 0 3313 3158 2105 169 171 2 chr6 94466364 94466796 -87948446 - MLT1D LTR MaLR 0 505 1 263 344 112 8 chr6 94467064 94467189 -87948053 - L2 LINE L2 -1 3271 3134 1752 332 52 34 chr6 94467248 94467837 -87947405 - L2 LINE L2 -376 2938 2324 2352 135 17 96 chr6 94467837 94467906 -87947336 - MSTA LTR MaLR -4 424 351 1601 181 16 29 chr6 94467906 94468215 -87947027 + AluJb SINE Alu 3 307 -5 2352 135 17 96 chr6 94468215 94468605 -87946637 - MSTA LTR MaLR -77 351 1 1752 332 52 34 chr6 94468605 94468966 -87946276 - L2 LINE L2 -990 2324 1971 1113 263 100 9 chr6 94469115 94469581 -87945661 + MER90 LTR ERV1 67 614 0 1274 172 32 124 chr6 94470033 94470371 -87944871 - L1MD3 LINE L1 -263 7732 7426 430 259 19 0 chr6 94470373 94470481 -87944761 - MLT1F1 LTR MaLR -420 147 38 371 221 7 76 chr6 94470483 94470628 -87944614 - L1MD3 LINE L1 -877 7118 6984 * 1132 190 35 0 chr6 94470627 94470885 -87944357 - L1PA15 LINE L1 -775 5371 5105 4623 168 6 9 chr6 94470893 94471690 -87943552 + L1PA15 LINE L1 5371 6165 0 4115 135 18 6 chr6 94471702 94472369 -87942873 + L1PA16 LINE L1 5485 6159 -7 3629 231 57 84 chr6 94472370 94473706 -87941536 - L1MC4 LINE L1 -1019 7092 5801 825 213 50 0 chr6 94473706 94473866 -87941376 - FAM SINE Alu -7 168 1 3629 231 57 84 chr6 94473866 94474071 -87941171 - L1MC4 LINE L1 -2310 5801 5592 2735 234 37 55 chr6 94474069 94474158 -87941084 - L1MC4 LINE L1 -1100 5115 5026 * 227 31 31 0 chr6 94474158 94474190 -87941052 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2735 234 37 55 chr6 94474190 94474394 -87940848 - L1MC4 LINE L1 -1189 5026 4820 2354 93 0 0 chr6 94474394 94474695 -87940547 - AluY SINE Alu -5 306 6 2735 234 37 55 chr6 94474695 94475454 -87939788 - L1MC4 LINE L1 -1395 4820 4081 1591 214 3 3 chr6 94475520 94475814 -87939428 + AluJb SINE Alu 1 294 -18 1122 238 0 4 chr6 94475827 94476062 -87939180 + AluJo SINE Alu 49 282 -30 483 272 14 5 chr6 94476111 94476320 -87938922 - L1MC4 LINE L1 -6094 302 45 2604 130 54 4 chr6 94476324 94476787 -87938455 - LTR19A LTR ERV1 0 486 1 2105 120 3 7 chr6 94476987 94477286 -87937956 + AluSg SINE Alu 1 298 -12 388 358 0 7 chr6 94477708 94477859 -87937383 + MLT1K LTR MaLR 329 478 -110 2695 133 35 5 chr6 94477873 94478300 -87936942 + MER4E LTR ERV1 1 440 -339 9951 68 68 1 chr6 94478300 94479659 -87935583 - L1P LINE L1 -3840 2306 858 7032 45 5 0 chr6 94479655 94480760 -87934482 + L1PA5 LINE L1 5015 6122 -32 * 216 0 0 0 chr6 94480763 94480787 -87934455 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2478 66 3 74 chr6 94480787 94481166 -87934076 + MER4E LTR ERV1 415 766 0 276 204 80 23 chr6 94481166 94481254 -87933988 + MLT1K LTR MaLR 496 588 0 1948 109 4 0 chr6 94481585 94481850 -87933392 - AluSc SINE Alu -5 304 39 231 88 0 0 chr6 94482676 94482710 -87932532 + (CA)n Simple_repeat Simple_repeat 2 35 0 924 223 6 0 chr6 94482921 94483096 -87932146 + MER45A DNA AcHobo 3 178 0 244 274 80 53 chr6 94483385 94483498 -87931744 - L2 LINE L2 -35 3237 3122 338 369 34 22 chr6 94483978 94484157 -87931085 + MIR3 SINE MIR 25 205 -3 25 0 0 0 chr6 94484369 94484394 -87930848 + AT_rich Low_complexity Low_complexity 1 25 0 188 135 27 0 chr6 94484438 94484475 -87930767 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 219 114 0 0 chr6 94484584 94484619 -87930623 + (TC)n Simple_repeat Simple_repeat 1 35 0 730 208 73 45 chr6 94484633 94484878 -87930364 - L1ME LINE L1 -370 5751 5500 626 291 82 44 chr6 94484971 94485466 -87929776 - L1ME LINE L1 -687 5434 4918 513 323 42 16 chr6 94486994 94487186 -87928056 - MIR SINE MIR -3 259 63 32 26 0 0 chr6 94487483 94487522 -87927720 + AT_rich Low_complexity Low_complexity 1 39 0 342 241 13 25 chr6 94487544 94487623 -87927619 + L2 LINE L2 3233 3310 -3 33 56 0 0 chr6 94487871 94487925 -87927317 + AT_rich Low_complexity Low_complexity 1 54 0 423 0 0 0 chr6 94489654 94489701 -87925541 + (TG)n Simple_repeat Simple_repeat 1 47 0 318 26 0 0 chr6 94489703 94489742 -87925500 + (GA)n Simple_repeat Simple_repeat 2 40 0 236 303 67 42 chr6 94490302 94490403 -87924839 - MIR SINE MIR -12 250 142 2077 134 0 7 chr6 94490403 94490702 -87924540 - AluSx SINE Alu -15 297 1 236 303 67 42 chr6 94490702 94490765 -87924477 - MIR SINE MIR -120 142 82 477 243 36 0 chr6 94490850 94490961 -87924281 - MIR3 SINE MIR -5 203 89 244 182 18 18 chr6 94491122 94491177 -87924065 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 10712 184 13 14 chr6 94491178 94494470 -87920772 - L1PB3 LINE L1 -5 6149 2868 898 165 109 130 chr6 94494467 94494806 -87920436 + L1MC3 LINE L1 6766 7097 -688 * 240 261 11 33 chr6 94494806 94494898 -87920344 + MLT1F1 LTR MaLR 35 124 -443 3013 157 12 52 chr6 94494901 94495499 -87919743 + L1MC3 LINE L1 7192 7765 -20 29 51 4 0 chr6 94495593 94495685 -87919557 + AT_rich Low_complexity Low_complexity 1 57 0 696 293 32 36 chr6 94497450 94497699 -87917543 - MIR SINE MIR 0 262 15 31896 48 2 1 chr6 94497708 94503853 -87911389 + L1PA3 LINE L1 3 6155 0 219 36 0 0 chr6 94504168 94504196 -87911046 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2573 104 8 0 chr6 94504204 94504579 -87910663 - L1PB1 LINE L1 -5 6862 6485 * 8381 45 0 4 chr6 94504572 94506390 -87908852 - L1PA5 LINE L1 -5 6149 4336 10272 193 15 54 chr6 94506396 94507746 -87907496 - L1PB1 LINE L1 -376 6491 5090 203 0 0 36 chr6 94507746 94507774 -87907468 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 10272 193 15 54 chr6 94507774 94508990 -87906252 - L1PB1 LINE L1 -1777 5090 4096 192 40 0 0 chr6 94508990 94509015 -87906227 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 10272 193 15 54 chr6 94509015 94509866 -87905376 - L1PB1 LINE L1 -2771 4096 3213 1607 191 137 32 chr6 94509878 94510374 -87904868 - LTR10A LTR ERV1 -61 548 1 8987 136 84 10 chr6 94510385 94510973 -87904269 - L1PB1 LINE L1 -3656 3206 2663 2184 130 3 0 chr6 94510973 94511273 -87903969 + AluSg SINE Alu 2 302 -8 8987 136 84 10 chr6 94511273 94512152 -87903090 - L1PB1 LINE L1 -4199 2663 1851 234 62 0 0 chr6 94512152 94512184 -87903058 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8987 136 84 10 chr6 94512184 94513561 -87901681 - L1PB1 LINE L1 -5011 1851 2 1701 170 7 24 chr6 94513561 94513855 -87901387 + AluJb SINE Alu 16 304 -8 189 250 17 67 chr6 94513953 94514013 -87901229 + L2 LINE L2 3257 3313 0 25 31 0 0 chr6 94514119 94514151 -87901091 + AT_rich Low_complexity Low_complexity 1 32 0 2286 104 7 0 chr6 94514868 94515166 -87900076 + AluSg SINE Alu 2 301 -9 1951 86 3 75 chr6 94515902 94516194 -87899048 - AluSc SINE Alu -1 308 38 419 302 39 8 chr6 94516470 94516599 -87898643 - L2 LINE L2 0 3272 3140 640 313 175 22 chr6 94516920 94517473 -87897769 - L2 LINE L2 -449 2865 2228 327 203 133 49 chr6 94518566 94518592 -87896650 - MER103 DNA DNA -8 158 136 2446 217 21 44 chr6 94518592 94519159 -87896083 + MLT2B3 LTR ERVL 1 554 0 327 203 133 49 chr6 94519159 94519275 -87895967 - MER103 DNA DNA -30 136 4 246 218 287 23 chr6 94519465 94519552 -87895690 + MIR SINE MIR 38 147 -61 678 307 32 8 chr6 94519599 94519850 -87895392 - MIR SINE MIR 0 262 6 185 263 188 12 chr6 94520419 94520499 -87894743 - L2 LINE L2 -1 3312 3219 1963 142 3 12 chr6 94520605 94520950 -87894292 + MER47A DNA MER2_type 25 366 0 533 298 24 39 chr6 94521329 94521584 -87893658 - L2 LINE L2 -142 3171 2921 402 329 73 0 chr6 94521694 94521858 -87893384 - MIR3 SINE MIR -2 206 31 311 311 163 19 chr6 94522106 94522370 -87892872 + L1MC/D LINE L1 4952 5253 -893 500 310 46 16 chr6 94522375 94522743 -87892499 + L1MC/D LINE L1 5254 5632 -2176 353 156 0 111 chr6 94522765 94522855 -87892387 - L2 LINE L2 0 3313 3234 1904 154 24 0 chr6 94523166 94523458 -87891784 + AluSx SINE Alu 1 299 -13 210 171 0 0 chr6 94523585 94523626 -87891616 + GA-rich Low_complexity Low_complexity 2 42 0 21 36 0 0 chr6 94525503 94525531 -87889711 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 94526346 94526368 -87888874 + AT_rich Low_complexity Low_complexity 1 22 0 2072 83 36 24 chr6 94526390 94526783 -87888459 - LTR7 LTR ERV1 -8 442 1 2312 94 48 0 chr6 94526783 94527155 -87888087 - HERVH LTR ERV1 0 7713 7324 1298 131 19 0 chr6 94527157 94527371 -87887871 - HERVH LTR ERV1 -1896 5817 5600 2906 143 0 2 chr6 94527372 94527987 -87887255 - HERVH LTR ERV1 -2564 5149 4488 5434 107 5 3 chr6 94527989 94528842 -87886400 - HERVH LTR ERV1 -3720 3993 3140 * 14277 109 17 15 chr6 94528821 94531624 -87883618 - HERVH LTR ERV1 -4718 2995 1 2203 94 15 22 chr6 94531633 94532034 -87883208 - LTR7 LTR ERV1 -9 441 1 1059 280 53 2 chr6 94532515 94532929 -87882313 - L1ME3A LINE L1 -208 5962 5528 2067 110 0 17 chr6 94533574 94533711 -87881531 + AluSx SINE Alu 1 139 -173 2353 70 0 22 chr6 94533711 94534024 -87881218 + AluY SINE Alu 1 306 -5 2067 110 0 17 chr6 94534024 94534178 -87881064 + AluSx SINE Alu 139 287 -25 28 0 0 0 chr6 94534180 94534208 -87881034 + AT_rich Low_complexity Low_complexity 1 28 0 5327 128 45 14 chr6 94534225 94535491 -87879751 + L1MA8 LINE L1 4980 6287 -4 21 57 0 0 chr6 94537067 94537102 -87878140 + AT_rich Low_complexity Low_complexity 1 35 0 431 277 58 137 chr6 94537162 94537835 -87877407 + L2 LINE L2 2667 3269 -3 2602 130 57 63 chr6 94537850 94538343 -87876899 - LTR2B LTR ERV1 0 490 1 2088 52 21 14 chr6 94538367 94538658 -87876584 + L1PA7 LINE L1 5841 6133 -21 198 71 0 0 chr6 94538661 94538689 -87876553 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1000 234 94 38 chr6 94539327 94539796 -87875446 + MER113 DNA MER1_type? 24 518 -3 2492 55 0 3 chr6 94539883 94540190 -87875052 + AluY SINE Alu 1 306 -5 282 73 0 0 chr6 94540888 94540929 -87874313 + (CA)n Simple_repeat Simple_repeat 1 41 0 210 143 0 0 chr6 94541348 94541383 -87873859 + (A)n Simple_repeat Simple_repeat 1 35 0 902 175 5 57 chr6 94541538 94541732 -87873510 - MER5A DNA MER1_type -2 187 4 207 425 24 24 chr6 94542000 94542127 -87873115 - MIR3 SINE MIR -81 127 1 451 266 120 25 chr6 94542663 94542821 -87872421 - MIR3 SINE MIR -13 195 23 399 289 11 37 chr6 94543411 94543598 -87871644 + L1ME LINE L1 6 187 -5883 2321 266 91 48 chr6 94543904 94544178 -87871064 + L1ME LINE L1 392 653 -5427 2400 82 0 0 chr6 94544178 94544481 -87870761 - AluY SINE Alu -8 303 1 2321 266 91 48 chr6 94544481 94545595 -87869647 + L1ME LINE L1 653 1717 -4363 309 26 0 0 chr6 94545595 94545633 -87869609 + (TA)n Simple_repeat Simple_repeat 1 38 0 279 0 0 0 chr6 94545632 94545663 -87869579 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 2321 266 91 48 chr6 94545633 94547242 -87868000 + L1ME LINE L1 1717 3255 -2825 2209 124 3 0 chr6 94547242 94547548 -87867694 + AluSg1 SINE Alu 1 307 -2 2321 266 91 48 chr6 94547548 94547738 -87867504 + L1ME LINE L1 3255 3435 -2645 402 21 0 0 chr6 94547738 94547785 -87867457 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1418 165 85 52 chr6 94547790 94548062 -87867180 - AluJo SINE Alu -30 282 2 2321 266 91 48 chr6 94548062 94548398 -87866844 + L1ME LINE L1 3438 4005 -2075 308 232 71 58 chr6 94548460 94548615 -87866627 + L1MEd LINE L1 680 836 -5283 520 265 65 14 chr6 94548643 94548922 -87866320 + L1MEd LINE L1 913 1205 -4914 26 30 0 0 chr6 94549083 94549116 -87866126 + AT_rich Low_complexity Low_complexity 1 33 0 6654 180 72 15 chr6 94549154 94551601 -87863641 - L1MA5 LINE L1 -1 7001 4315 873 223 34 67 chr6 94551599 94551868 -87863374 - L1MA5 LINE L1 -6573 276 17 * 371 293 0 24 chr6 94551868 94551991 -87863251 - MER58 DNA MER1_type -2300 120 1 378 216 36 27 chr6 94551991 94552102 -87863140 - L1M4 LINE L1 -2952 3194 3083 296 288 64 0 chr6 94552102 94552227 -87863015 - HAL1 LINE L1 -861 1646 1514 26 30 0 0 chr6 94552497 94552530 -87862712 + AT_rich Low_complexity Low_complexity 1 33 0 1762 186 81 0 chr6 94552718 94553126 -87862116 - L1MC3 LINE L1 -10 7775 7335 1011 183 4 42 chr6 94553124 94553364 -87861878 + L1MC3 LINE L1 6865 7095 -690 * 373 222 11 11 chr6 94553366 94553456 -87861786 + MLT1F1 LTR MaLR 35 124 -443 1608 217 52 0 chr6 94553498 94553844 -87861398 - MLT1A1 LTR MaLR 0 365 2 37 39 0 0 chr6 94554217 94554268 -87860974 + AT_rich Low_complexity Low_complexity 1 51 0 219 103 0 0 chr6 94556356 94556395 -87858847 + (T)n Simple_repeat Simple_repeat 1 39 0 269 250 34 88 chr6 94557794 94557942 -87857300 + MLT1K LTR MaLR 382 521 -67 397 316 52 26 chr6 94558194 94558387 -87856855 + MIR SINE MIR 65 262 0 377 365 47 6 chr6 94558730 94558900 -87856342 + MIR SINE MIR 49 225 -37 1074 188 65 33 chr6 94559214 94559550 -87855692 + LTR37A LTR ERV1 75 421 -5 5730 108 36 7 chr6 94560130 94561166 -87854076 - L1PA13 LINE L1 -2 6161 5117 8068 207 10 10 chr6 94561177 94563255 -87851987 - L1PA12 LINE L1 -5857 1724 1 2204 117 125 13 chr6 94563532 94563917 -87851325 + MSTA LTR MaLR 1 428 0 26 30 0 0 chr6 94566213 94566246 -87848996 + AT_rich Low_complexity Low_complexity 1 33 0 1612 206 3 0 chr6 94566374 94566665 -87848577 + AluJb SINE Alu 1 292 -20 2128 170 81 0 chr6 94566686 94567080 -87848162 + MSTB LTR MaLR 1 426 0 183 392 14 14 chr6 94567178 94567252 -87847990 - MIR3 SINE MIR -24 184 111 255 202 12 60 chr6 94567662 94567746 -87847496 + GA-rich Low_complexity Low_complexity 5 84 0 213 200 0 55 chr6 94568685 94568740 -87846502 + CT-rich Low_complexity Low_complexity 3 54 0 259 275 117 8 chr6 94570039 94570159 -87845083 + MLT1J LTR MaLR 1 133 -378 632 263 40 20 chr6 94570284 94570482 -87844760 + MLT1J2 LTR MaLR 249 450 0 207 329 158 0 chr6 94570539 94570621 -87844621 - L2 LINE L2 -22 3291 3197 522 200 0 70 chr6 94570994 94571109 -87844133 - AluJb SINE Alu -77 235 129 860 167 0 14 chr6 94571122 94571266 -87843976 - FLAM_C SINE Alu 0 143 2 569 107 41 8 chr6 94572174 94572295 -87842947 + GA-rich Low_complexity Low_complexity 1 125 0 188 240 60 0 chr6 94572533 94572583 -87842659 - L2 LINE L2 0 3272 3220 186 43 0 0 chr6 94573113 94573136 -87842106 + (T)n Simple_repeat Simple_repeat 1 23 0 249 109 0 0 chr6 94573240 94573286 -87841956 + (T)n Simple_repeat Simple_repeat 1 46 0 7276 29 0 0 chr6 94573289 94574539 -87840703 - L1HS LINE L1 -4 6151 4902 * 17934 23 0 0 chr6 94574538 94576762 -87838480 + L1P LINE L1 2624 4847 -1299 216 237 65 101 chr6 94577198 94577337 -87837905 - L2 LINE L2 -215 3057 2924 225 132 0 0 chr6 94577514 94577552 -87837690 + (CA)n Simple_repeat Simple_repeat 1 38 0 243 321 50 64 chr6 94577552 94577759 -87837483 - MIR SINE MIR -53 209 4 319 256 16 50 chr6 94578105 94578226 -87837016 - MIR SINE MIR -111 151 35 2269 124 11 32 chr6 94578365 94578736 -87836506 + THE1B LTR MaLR 1 363 -1 429 120 0 0 chr6 94579407 94579482 -87835760 - L1MD2 LINE L1 -1 6358 6284 6908 28 0 0 chr6 94579482 94580331 -87834911 - L1P LINE L1 -1331 4815 3967 2082 20 0 4 chr6 94580332 94580578 -87834664 + L1PA3 LINE L1 5911 6155 0 4414 203 62 26 chr6 94580597 94581937 -87833305 - L1MD1 LINE L1 -53 6189 4777 663 13 0 0 chr6 94581937 94582013 -87833229 + (CTATT)n Simple_repeat Simple_repeat 5 80 0 4414 203 62 26 chr6 94582013 94582349 -87832893 - L1MD1 LINE L1 -1465 4777 4454 248 262 24 36 chr6 94582407 94582491 -87832751 - MER77 LTR ERV1 -469 136 54 1559 203 58 5 chr6 94582514 94582928 -87832314 + L1MD1 LINE L1 1128 1563 -4977 1760 186 104 70 chr6 94582933 94583709 -87831533 + L1MD1 LINE L1 1680 2482 -4058 * 3334 204 68 35 chr6 94583694 94585075 -87830167 + L1MD1 LINE L1 5201 6636 0 409 230 134 64 chr6 94585812 94585988 -87829254 + L1MC5 LINE L1 6698 6937 -1105 3477 42 5 2 chr6 94585988 94586422 -87828820 + L1PA4 LINE L1 5721 6155 0 409 230 134 64 chr6 94586422 94586490 -87828752 + L1MC5 LINE L1 6937 6999 -1043 2799 159 32 63 chr6 94586725 94587402 -87827840 + L1MA9 LINE L1 5657 6312 0 350 327 133 37 chr6 94587403 94587727 -87827515 + L1MC4 LINE L1 7527 7881 -161 12460 203 20 51 chr6 94587742 94591797 -87823445 - L1PB1 LINE L1 -1 6866 2871 4622 72 117 124 chr6 94591797 94592629 -87822613 + LTR12 LTR ERV1 1 826 0 12460 203 20 51 chr6 94592629 94593330 -87821912 - L1PB1 LINE L1 -3996 2871 2150 40260 42 21 1 chr6 94593340 94599370 -87815872 - L1PA2 LINE L1 -1 6154 1 2595 107 13 9 chr6 94599370 94599830 -87815412 - L1PB1 LINE L1 -4711 2152 1691 4576 72 115 124 chr6 94599830 94600663 -87814579 - LTR12 LTR ERV1 0 826 1 57180 87 18 9 chr6 94600663 94608931 -87806311 - HERV9 LTR ERV1 0 8399 58 5208 91 133 0 chr6 94608955 94609682 -87805560 - LTR12 LTR ERV1 0 826 3 7461 124 150 48 chr6 94609682 94610368 -87804874 - L1PB1 LINE L1 -5169 1694 1079 365 141 16 0 chr6 94610368 94610432 -87804810 + MSTD LTR MaLR 330 394 -2 7461 124 150 48 chr6 94610432 94611218 -87804024 - L1PB1 LINE L1 -5784 1079 3 436 282 6 11 chr6 94611559 94611733 -87803509 - MER41B LTR ERV1 -208 427 255 1479 203 69 29 chr6 94612952 94613301 -87801941 + MLT1A1 LTR MaLR 1 363 -2 2994 170 38 2 chr6 94613349 94613872 -87801370 + MER44D DNA MER2_type 1 597 -8 433 285 54 43 chr6 94614143 94614329 -87800913 - MIR3 SINE MIR -7 201 14 495 278 17 0 chr6 94615386 94615501 -87799741 - MIR3 SINE MIR -44 164 48 2011 238 45 52 chr6 94616222 94617089 -87798153 + L1ME LINE L1 963 1823 -4717 679 231 46 41 chr6 94617089 94617284 -87797958 + MER70A LTR ERVL 1 196 -276 482 272 12 6 chr6 94617322 94617491 -87797751 - L1M4 LINE L1 -1744 4402 4233 40122 57 3 0 chr6 94617520 94623653 -87791589 - L1PA4 LINE L1 0 6155 3 180 0 0 0 chr6 94623698 94623718 -87791524 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1093 201 93 0 chr6 94623722 94624001 -87791241 + L1MD1 LINE L1 5937 6241 -1 21 0 0 0 chr6 94624514 94624535 -87790707 + AT_rich Low_complexity Low_complexity 1 21 0 284 306 157 0 chr6 94624796 94624904 -87790338 - L2 LINE L2 -1 3312 3188 2248 113 0 3 chr6 94624914 94625249 -87789993 + L1PA13 LINE L1 5825 6158 -5 1329 218 67 32 chr6 94625400 94625803 -87789439 + L1ME1 LINE L1 5745 6161 -5 1905 257 80 54 chr6 94625870 94627690 -87787552 + L1ME LINE L1 4259 6127 -429 395 260 101 0 chr6 94627710 94627998 -87787244 + L1M4 LINE L1 2964 3280 -2866 239 258 79 0 chr6 94628188 94628277 -87786965 - MER94 DNA DNA -35 99 4 544 257 80 23 chr6 94628863 94629038 -87786204 - MLT1I LTR MaLR -10 399 215 10777 149 8 6 chr6 94629223 94631882 -87783360 - L1PA10 LINE L1 -2 7604 4934 10590 188 21 71 chr6 94631885 94633517 -87781725 - L1PA10 LINE L1 -2733 4851 3139 225 160 20 20 chr6 94633517 94633567 -87781675 - MADE1 DNA Mariner 0 80 31 10590 188 21 71 chr6 94633567 94633593 -87781649 - L1PA10 LINE L1 -4445 3139 3113 263 137 0 20 chr6 94633593 94633644 -87781598 + MADE1 DNA Mariner 31 80 0 10590 188 21 71 chr6 94633644 94635198 -87780044 - L1PA10 LINE L1 -4471 3113 1695 237 312 1 0 chr6 94635207 94635287 -87779955 - L1PA10 LINE L1 -5492 1506 292 3727 152 26 7 chr6 94636255 94636979 -87778263 - L1MA8 LINE L1 -4 6287 5550 23 0 0 0 chr6 94637843 94637866 -87777376 + AT_rich Low_complexity Low_complexity 1 23 0 1411 153 12 8 chr6 94638277 94638531 -87776711 - L1PB4 LINE L1 -24 6132 5878 1747 266 133 16 chr6 94638750 94639366 -87775876 - L2 LINE L2 -383 2931 2244 195 42 0 0 chr6 94639966 94639990 -87775252 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 615 204 0 34 chr6 94640689 94640836 -87774406 - L1MA10 LINE L1 -11 6323 6182 1191 225 115 78 chr6 94640839 94640905 -87774337 - L1ME1 LINE L1 -146 6020 5958 2039 151 23 0 chr6 94640905 94641256 -87773986 - L1PA16 LINE L1 -9 6157 5799 1191 225 115 78 chr6 94641256 94641551 -87773691 - L1ME1 LINE L1 -208 5958 5630 692 179 41 0 chr6 94641551 94641674 -87773568 - L1PA8A LINE L1 0 6131 6004 1191 225 115 78 chr6 94641674 94641840 -87773402 - L1ME1 LINE L1 -536 5630 5472 453 307 48 44 chr6 94641906 94642134 -87773108 + HAL1 LINE L1 2278 2506 -1 4064 116 39 31 chr6 94642371 94643087 -87772155 + L1MA5 LINE L1 5577 6298 -2 21 0 0 0 chr6 94643087 94643108 -87772134 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 94643150 94643173 -87772069 + AT_rich Low_complexity Low_complexity 1 23 0 569 288 80 4 chr6 94643387 94643613 -87771629 + MIR SINE MIR 20 262 0 24 85 0 0 chr6 94643658 94643717 -87771525 + AT_rich Low_complexity Low_complexity 1 59 0 702 145 48 0 chr6 94643895 94644019 -87771223 + AluSg/x SINE Alu 177 306 -3 2659 265 50 18 chr6 94644129 94645052 -87770190 - L1ME LINE L1 -5099 971 20 211 308 64 13 chr6 94645801 94645879 -87769363 - MIR SINE MIR -110 98 17 1955 146 64 14 chr6 94645966 94646323 -87768919 - THE1C LTR MaLR 0 375 1 10426 115 11 32 chr6 94646323 94647937 -87767305 - THE1C-int LTR MaLR 0 1580 1 1824 153 64 22 chr6 94647937 94648297 -87766945 - THE1C LTR MaLR 0 375 1 1565 161 39 32 chr6 94649276 94649586 -87765656 + AluJo SINE Alu 1 312 0 247 213 80 0 chr6 94650598 94650673 -87764569 + L1MC5 LINE L1 7833 7913 -48 215 317 77 10 chr6 94651240 94651344 -87763898 - L3b LINE CR1 -102 1481 1371 1579 288 157 13 chr6 94651393 94652205 -87763037 - L2 LINE L2 -2 3311 2381 21 36 0 0 chr6 94652460 94652488 -87762754 + AT_rich Low_complexity Low_complexity 1 28 0 1643 230 81 35 chr6 94653942 94654425 -87760817 - MLT1D LTR MaLR 0 505 1 2818 236 62 98 chr6 94654427 94654567 -87760675 + L1MC4 LINE L1 6010 6153 -1736 2159 107 14 0 chr6 94654567 94654857 -87760385 + AluSc SINE Alu 1 294 -15 2818 236 62 98 chr6 94654857 94656265 -87758977 + L1MC4 LINE L1 6153 7584 -305 874 166 41 0 chr6 94656282 94656451 -87758791 + L1MA9 LINE L1 5906 6081 -231 274 209 26 70 chr6 94656454 94656569 -87758673 + L1MA9 LINE L1 6181 6290 -22 543 274 31 38 chr6 94656612 94656900 -87758342 + L1MC4 LINE L1 7614 7899 -143 258 143 0 0 chr6 94656923 94656972 -87758270 + (CA)n Simple_repeat Simple_repeat 2 50 0 348 222 27 51 chr6 94657007 94657136 -87758106 + L1MC4 LINE L1 7880 7995 0 401 318 77 39 chr6 94658362 94658699 -87756543 - LTR16A LTR ERVL -5 445 96 4057 53 4 4 chr6 94658699 94659513 -87755729 + L1PA4 LINE L1 4968 5781 -373 20157 44 36 3 chr6 94659528 94665368 -87749874 + L1PA3 LINE L1 10 6152 -3 2770 53 3 0 chr6 94665378 94665775 -87749467 + L1PA4 LINE L1 5770 6167 0 3121 42 3 0 chr6 94665779 94666163 -87749079 + L1PA5 LINE L1 5770 6154 0 204 97 0 0 chr6 94666217 94666248 -87748994 + (TC)n Simple_repeat Simple_repeat 1 31 0 2351 147 14 0 chr6 94666248 94666670 -87748572 - L1MC3 LINE L1 -169 7616 7189 322 264 0 0 chr6 94666670 94666761 -87748481 - MLT1F1 LTR MaLR -442 125 35 1907 148 3 43 chr6 94666880 94667205 -87748037 + AluSx SINE Alu 1 312 0 225 307 45 0 chr6 94667220 94667308 -87747934 - LTR16A LTR ERVL -358 92 1 286 221 53 32 chr6 94667467 94667562 -87747680 - HERV16 LTR ERVL -433 5331 5235 386 396 11 11 chr6 94667695 94667978 -87747264 - HERV16 LTR ERVL -699 5065 4783 1277 310 65 36 chr6 94668218 94668280 -87746962 - HERV16 LTR ERVL -1070 4415 4356 1802 216 48 72 chr6 94668280 94668848 -87746394 - MLT2B3 LTR ERVL 0 554 1 1277 310 65 36 chr6 94668848 94669791 -87745451 - HERV16 LTR ERVL -1129 4356 3389 449 211 44 0 chr6 94669781 94669871 -87745371 - HERV16 LTR ERVL -3199 1797 1704 * 2430 305 63 15 chr6 94669912 94670960 -87744282 - HERV16 LTR ERVL -3438 1558 461 3403 164 86 19 chr6 94671181 94671975 -87743267 - MER21A LTR ERV1 0 931 28 252 77 0 0 chr6 94671975 94672014 -87743228 + (TG)n Simple_repeat Simple_repeat 2 40 0 3403 164 86 19 chr6 94672014 94672042 -87743200 - MER21A LTR ERV1 -903 28 3 262 327 39 0 chr6 94672089 94672193 -87743049 - HERV16 LTR ERVL -4888 108 1 726 299 83 20 chr6 94672247 94672595 -87742647 - LTR16A LTR ERVL -80 370 1 2283 163 23 21 chr6 94672633 94673062 -87742180 + MSTB1 LTR MaLR 1 430 -2 651 319 170 19 chr6 94673782 94674455 -87740787 + L2 LINE L2 2208 3024 -248 380 265 59 59 chr6 94674499 94674752 -87740490 + LTR33 LTR ERVL 14 266 -255 304 344 33 0 chr6 94674989 94675079 -87740163 + L2 LINE L2 3134 3226 -46 240 303 83 28 chr6 94676234 94676343 -87738899 - MIR3 SINE MIR -1 207 93 242 280 27 0 chr6 94676546 94676621 -87738621 + CT-rich Low_complexity Low_complexity 2 78 0 288 204 301 0 chr6 94676635 94676738 -87738504 - L1ME4a LINE L1 -15 6106 5973 2911 3 0 0 chr6 94677998 94678311 -87736931 + AluYb8 SINE Alu 1 313 -5 450 280 58 48 chr6 94678357 94678546 -87736696 + L2 LINE L2 3118 3308 -5 895 83 0 15 chr6 94678765 94678897 -87736345 - L1PA16 LINE L1 -227 5939 5810 1894 239 16 49 chr6 94679927 94680480 -87734762 + MLT1E2 LTR MaLR 92 626 0 1626 149 110 13 chr6 94681068 94681419 -87733823 + MLT2D LTR ERVL 1 481 -39 227 186 0 0 chr6 94681451 94681494 -87733748 - MLT2B1 LTR ERVL 0 520 478 181 242 30 45 chr6 94682425 94682491 -87732751 + L2 LINE L2 3159 3223 -90 182 373 0 0 chr6 94682975 94683034 -87732208 + L2 LINE L2 2995 3053 -219 193 203 0 141 chr6 94683132 94683196 -87732046 + L2 LINE L2 3207 3261 -11 832 163 34 27 chr6 94684383 94684530 -87730712 + FRAM SINE Alu 5 152 -24 2099 144 47 11 chr6 94686602 94686964 -87728278 + THE1C LTR MaLR 1 375 0 9578 112 33 41 chr6 94686964 94687636 -87727606 + THE1C-int LTR MaLR 1 677 -903 2146 125 24 56 chr6 94687636 94688012 -87727230 - THE1B LTR MaLR 0 364 1 9578 112 33 41 chr6 94688012 94688932 -87726310 + THE1C-int LTR MaLR 677 1580 0 2106 127 68 8 chr6 94688932 94689286 -87725956 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr6 94689433 94689461 -87725781 + AT_rich Low_complexity Low_complexity 1 28 0 230 140 0 100 chr6 94690714 94690746 -87724496 + MLT1L LTR MaLR 209 236 -379 2155 158 44 3 chr6 94690746 94691133 -87724109 - MER57A LTR ERV1 0 403 1 230 140 0 100 chr6 94691133 94691150 -87724092 + MLT1L LTR MaLR 236 253 -362 230 361 12 24 chr6 94691521 94691604 -87723638 - L2 LINE L2 -649 2665 2584 446 376 90 6 chr6 94691712 94692044 -87723198 - L2 LINE L2 -916 2398 2039 242 255 184 10 chr6 94692294 94692392 -87722850 - L2 LINE L2 -1341 1973 1859 435 365 66 8 chr6 94692505 94692746 -87722496 - MIR SINE MIR -6 256 2 21 0 0 0 chr6 94692974 94692995 -87722247 + AT_rich Low_complexity Low_complexity 1 21 0 853 122 0 0 chr6 94693700 94693823 -87721419 - AluSp/q SINE Alu -3 310 188 1861 83 0 4 chr6 94693823 94694052 -87721190 - AluSq SINE Alu -85 228 1 410 232 12 0 chr6 94696091 94696173 -87719069 + Tigger7 DNA MER2_type 1 83 -622 838 164 0 0 chr6 94696173 94696319 -87718923 - L1P LINE L1 -2494 3652 3507 285 346 119 5 chr6 94696342 94696544 -87718698 - L2 LINE L2 -1405 1909 1685 257 184 0 0 chr6 94696554 94696603 -87718639 - L1P LINE L1 -2639 3507 3459 9091 215 7 29 chr6 94697074 94697389 -87717853 + L1P4 LINE L1 2880 3200 -2966 2339 72 7 0 chr6 94697389 94697679 -87717563 + AluY SINE Alu 1 292 -19 9091 215 7 29 chr6 94697679 94700052 -87715190 + L1P4 LINE L1 3200 5508 -658 2356 99 0 3 chr6 94700061 94700374 -87714868 + AluSq SINE Alu 1 312 -1 1216 110 22 0 chr6 94700374 94700595 -87714647 + AluSg/x SINE Alu 126 350 0 356 276 0 9 chr6 94700694 94700810 -87714432 - MER69 DNA AcHobo -380 2146 2032 1559 255 118 8 chr6 94700871 94701389 -87713853 - MER69 DNA AcHobo -651 575 1 180 245 41 0 chr6 94701648 94701697 -87713545 - L2 LINE L2 -219 3053 3003 444 19 0 0 chr6 94703367 94703420 -87711822 + (CA)n Simple_repeat Simple_repeat 1 53 0 3946 138 32 15 chr6 94703779 94704491 -87710751 + L1MC1 LINE L1 5592 6315 -18 234 230 115 18 chr6 94704525 94704638 -87710604 + L1ME4a LINE L1 5961 6084 -37 2173 100 0 10 chr6 94704701 94704992 -87710250 + AluSg SINE Alu 1 288 -22 252 214 0 0 chr6 94704995 94705051 -87710191 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 387 361 51 14 chr6 94705462 94705678 -87709564 + MIR SINE MIR 15 238 -24 415 313 110 62 chr6 94705694 94706084 -87709158 + L3 LINE CR1 557 965 -612 345 339 78 42 chr6 94706193 94706553 -87708689 + L3 LINE CR1 1203 1575 -2 420 322 81 39 chr6 94707016 94707567 -87707675 + L2 LINE L2 2703 3300 -13 224 314 39 39 chr6 94707598 94707751 -87707491 + L2 LINE L2 2543 2695 -619 1754 76 4 25 chr6 94707771 94708008 -87707234 + AluSp SINE Alu 75 306 -7 431 208 110 84 chr6 94708085 94708178 -87707064 - MIR SINE MIR -1 261 160 2154 117 0 0 chr6 94708178 94708479 -87706763 - AluSc SINE Alu 0 301 1 431 208 110 84 chr6 94708479 94708538 -87706704 - MIR SINE MIR -102 160 104 1902 163 34 20 chr6 94709789 94710145 -87705097 - MLT1A1 LTR MaLR 0 365 5 290 315 27 45 chr6 94710279 94710390 -87704852 + MER5B DNA MER1_type 70 178 0 724 196 78 4 chr6 94710398 94710557 -87704685 - MER5A DNA MER1_type 0 189 12 275 241 120 19 chr6 94710723 94710831 -87704411 + MLT1L LTR MaLR 493 611 -4 328 301 26 0 chr6 94711482 94711596 -87703646 + MLT1J LTR MaLR 110 290 -302 1222 226 120 40 chr6 94716431 94716911 -87698331 - MER39 LTR ERV1 0 707 4 313 191 59 0 chr6 94718441 94718509 -87696733 + MER103 DNA DNA 2 73 -93 462 296 116 6 chr6 94718916 94719088 -87696154 - MIR SINE MIR -15 247 57 376 235 31 0 chr6 94719189 94719287 -87695955 + MER5A DNA MER1_type 9 109 -80 399 202 150 87 chr6 94719342 94719515 -87695727 - MER5A DNA MER1_type -2 187 4 536 142 39 7 chr6 94719592 94719747 -87695495 + (TA)n Simple_repeat Simple_repeat 1 160 0 55 80 0 0 chr6 94719756 94719881 -87695361 + AT_rich Low_complexity Low_complexity 1 125 0 14374 168 17 15 chr6 94720781 94723551 -87691691 - L1MA2 LINE L1 0 7723 4959 2137 143 16 26 chr6 94723551 94723930 -87691312 - THE1C LTR MaLR 0 375 1 9832 124 22 30 chr6 94723930 94725520 -87689722 - THE1C-int LTR MaLR 0 1580 4 2152 140 10 44 chr6 94725524 94725910 -87689332 - THE1C LTR MaLR -1 374 2 14374 168 17 15 chr6 94725910 94727098 -87688144 - L1MA2 LINE L1 -2766 4957 3773 1474 177 8 8 chr6 94727098 94727391 -87687851 - AluJo SINE Alu 0 327 35 14374 168 17 15 chr6 94727391 94729305 -87685937 - L1MA2 LINE L1 -3950 3773 1838 15863 49 61 4 chr6 94779305 94781473 -87633769 - L1P LINE L1 -3851 2295 3 13907 114 8 14 chr6 94781472 94784885 -87630357 - L1P3 LINE L1 -3059 3402 2 * 5346 160 28 6 chr6 94784895 94786297 -87628945 + L1MA4 LINE L1 4855 6289 -11 2519 42 0 19 chr6 94786421 94786728 -87628514 + AluY SINE Alu 1 301 -10 1491 220 65 16 chr6 94786893 94787265 -87627977 - MLT1B LTR MaLR 0 390 1 243 282 35 35 chr6 94787460 94787545 -87627697 - MIR SINE MIR -70 192 108 186 353 69 9 chr6 94788363 94788479 -87626763 + MER5B DNA MER1_type 33 155 -23 334 106 33 2 chr6 94788687 94788744 -87626498 - L1PA7 LINE L1 -476 5678 5620 3276 78 5 9 chr6 94788744 94789190 -87626052 + L1PA7 LINE L1 5710 6154 0 426 280 161 37 chr6 94789261 94789479 -87625763 - MIR SINE MIR -10 252 8 366 348 139 27 chr6 94789491 94789951 -87625291 - L2 LINE L2 -30 3283 2745 556 336 107 107 chr6 94790150 94791708 -87623534 + L2 LINE L2 750 2307 -1007 369 212 104 78 chr6 94791722 94791915 -87623327 - MER67D LTR ERV1 -35 479 282 1352 226 85 19 chr6 94791926 94792390 -87622852 - MER67B LTR ERV1 -250 411 1 235 332 206 4 chr6 94792394 94792647 -87622595 + L2 LINE L2 2307 2610 -704 628 250 22 11 chr6 94794264 94794444 -87620798 + L1ME1 LINE L1 5586 5767 -399 845 228 47 31 chr6 94794455 94794709 -87620533 + L1ME1 LINE L1 5904 6161 -5 246 174 0 0 chr6 94794812 94794858 -87620384 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 298 207 99 27 chr6 94795715 94795826 -87619416 + MER112 DNA MER1_type 136 254 -6 318 303 60 73 chr6 94797635 94797935 -87617307 + L2 LINE L2 1980 2275 -1039 1084 314 40 35 chr6 94797941 94798533 -87616709 - L2 LINE L2 -2 3311 2712 659 297 176 63 chr6 94798534 94799411 -87615831 + L2 LINE L2 2287 3270 -2 469 340 51 10 chr6 94799696 94799893 -87615349 - MIR SINE MIR -10 252 48 256 173 19 0 chr6 94800551 94800603 -87614639 + L2 LINE L2 3261 3313 0 275 279 27 131 chr6 94801151 94801334 -87613908 - MIR SINE MIR -79 183 20 263 218 92 23 chr6 94801509 94801596 -87613646 + MIR SINE MIR 16 108 -154 189 0 0 0 chr6 94802222 94802243 -87612999 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 2137 121 0 0 chr6 94802247 94802528 -87612714 - AluSx SINE Alu -31 281 1 22 35 0 0 chr6 94802811 94802840 -87612402 + AT_rich Low_complexity Low_complexity 1 29 0 291 377 107 30 chr6 94803430 94803993 -87611249 + L2 LINE L2 1700 2305 -1009 203 320 78 29 chr6 94804057 94804160 -87611082 + MIR SINE MIR 32 139 -69 305 276 0 0 chr6 94804301 94804377 -87610865 + MIR SINE MIR 174 249 -13 201 182 0 0 chr6 94804385 94804418 -87610824 + (TTA)n Simple_repeat Simple_repeat 2 34 0 4915 131 14 17 chr6 94804999 94805784 -87609458 + LTR39 LTR ERV1 1 783 0 343 228 126 102 chr6 94805784 94805999 -87609243 + L1ME4a LINE L1 5858 6077 -44 458 261 239 0 chr6 94806015 94806191 -87609051 - MIR SINE MIR -44 218 1 21 0 0 0 chr6 94806212 94806233 -87609009 + AT_rich Low_complexity Low_complexity 1 21 0 772 270 107 25 chr6 94806734 94807097 -87608145 - MER34 LTR ERV1 -123 419 27 252 235 97 104 chr6 94807097 94807365 -87607877 - LTR38 LTR ERV1 0 556 291 442 254 85 76 chr6 94808327 94808764 -87606478 + MLT1J1 LTR MaLR 1 409 0 200 35 35 0 chr6 94808822 94808851 -87606391 + (CA)n Simple_repeat Simple_repeat 2 31 0 671 240 34 7 chr6 94808940 94809147 -87606095 + MIR SINE MIR 1 252 -10 1311 85 30 0 chr6 94809356 94809556 -87605686 + L1MA1 LINE L1 6097 6302 0 307 239 14 0 chr6 94811354 94811425 -87603817 + MIR SINE MIR 71 142 -66 22907 37 2 0 chr6 94811585 94815173 -87600069 - L1PA3 LINE L1 0 6155 2562 240 137 0 0 chr6 94816334 94816385 -87598857 + (TG)n Simple_repeat Simple_repeat 2 52 0 556 273 224 0 chr6 94816385 94816590 -87598652 - MIR SINE MIR -10 252 2 226 303 53 53 chr6 94816647 94816855 -87598387 - L2 LINE L2 -1262 2052 1845 2692 122 17 34 chr6 94817160 94817629 -87597613 + MER65C LTR ERV1 1 461 0 182 317 59 20 chr6 94817812 94817913 -87597329 + MIR3 SINE MIR 101 205 -3 2228 120 0 0 chr6 94818693 94818992 -87596250 - AluSx SINE Alu -13 299 1 795 140 35 0 chr6 94821121 94821292 -87593950 + (TA)n Simple_repeat Simple_repeat 2 178 0 398 276 108 43 chr6 94821298 94821483 -87593759 - MLT1J LTR MaLR -312 199 3 299 279 0 25 chr6 94822943 94823022 -87592220 - MIR SINE MIR -111 97 21 221 169 97 0 chr6 94823547 94823617 -87591625 + MIR SINE MIR 92 176 -32 2840 170 71 24 chr6 94823624 94824399 -87590843 - MER21A LTR ERV1 -6 925 1 331 227 72 0 chr6 94824518 94824615 -87590627 - Charlie2a DNA MER1_type -41 2821 2718 317 157 0 0 chr6 94824649 94824700 -87590542 - Charlie2a DNA MER1_type -1229 1633 1583 435 205 47 24 chr6 94824723 94824850 -87590392 - Charlie2a DNA MER1_type -1254 1608 1479 21 0 0 0 chr6 94824992 94825013 -87590229 + AT_rich Low_complexity Low_complexity 1 21 0 898 255 38 21 chr6 94825102 94825392 -87589850 - Charlie2a DNA MER1_type -2561 301 7 269 312 96 0 chr6 94825563 94825720 -87589522 + MER117 DNA MER1_type 9 180 -17 1970 165 2 41 chr6 94827049 94827468 -87587774 - L1MA9 LINE L1 -83 6229 5827 2102 271 39 35 chr6 94827537 94828259 -87586983 + L1M3b LINE L1 1227 1951 -5545 * 2490 272 26 41 chr6 94828238 94829107 -87586135 + L1M3b LINE L1 1813 2668 -4828 271 208 0 0 chr6 94829111 94829159 -87586083 - Tigger1 DNA MER2_type 0 2418 2371 * 9971 154 22 5 chr6 94829156 94830907 -87584335 - Tigger1 DNA MER2_type -632 1786 7 730 218 40 13 chr6 94830912 94831137 -87584105 + L1M3b LINE L1 2666 2896 -4600 * 6525 43 1 0 chr6 94831135 94832002 -87583240 - L1P LINE L1 -2593 3553 2686 1827 222 27 57 chr6 94831989 94832007 -87583235 + L1M3b LINE L1 2577 2594 -4971 * 15354 28 0 0 chr6 94832007 94834600 -87580642 + L1PA3 LINE L1 3562 6155 0 1827 222 27 57 chr6 94834600 94835799 -87579443 + L1M3b LINE L1 2594 3755 -3810 1030 259 84 16 chr6 94835799 94836120 -87579122 + MER2 DNA MER2_type 2 344 0 1827 222 27 57 chr6 94836120 94836147 -87579095 + L1M3b LINE L1 3755 3781 -3784 * 16522 183 18 7 chr6 94836141 94841900 -87573342 + L1PA12 LINE L1 952 6779 -805 39782 44 1 45 chr6 94841906 94845166 -87570076 + L1PA3 LINE L1 7 2839 -3327 2252 54 0 0 chr6 94845166 94845438 -87569804 + L1PA3 LINE L1 5875 6152 -3 39782 44 1 45 chr6 94845438 94848627 -87566615 + L1PA3 LINE L1 2839 6166 0 2269 117 6 0 chr6 94848628 94848969 -87566273 + L1PA14 LINE L1 5818 6160 -1 3867 225 30 0 chr6 94848973 94850000 -87565242 + L1M3b LINE L1 3769 4826 -2739 * 23413 108 7 1 chr6 94849995 94854526 -87560716 - L1PA8 LINE L1 -3 6169 1615 2645 203 3 2 chr6 94854528 94855104 -87560138 - L1 LINE L1 -1443 4703 4127 1375 204 75 7 chr6 94855133 94855412 -87559830 - AluJo SINE Alu -14 298 1 288 346 19 0 chr6 94856648 94856755 -87558487 - L2 LINE L2 -481 2833 2725 338 276 11 0 chr6 94856994 94857081 -87558161 + MIR3 SINE MIR 115 202 -6 21 0 0 0 chr6 94857381 94857402 -87557840 + AT_rich Low_complexity Low_complexity 1 21 0 189 368 132 0 chr6 94858157 94858263 -87556979 - L2 LINE L2 0 3272 3153 265 234 21 43 chr6 94858581 94858675 -87556567 + L1MEc LINE L1 42 133 -6263 254 253 13 0 chr6 94859594 94859669 -87555573 + Charlie8 DNA MER1_type 103 178 -2239 330 26 0 0 chr6 94859954 94859993 -87555249 + (TG)n Simple_repeat Simple_repeat 1 39 0 3615 241 60 36 chr6 94859998 94862045 -87553197 + L1PBa LINE L1 3 1639 -5224 1480 218 51 5 chr6 94862062 94862457 -87552785 + L1 LINE L1 2621 3033 -3113 5916 38 1 0 chr6 94862487 94863258 -87551984 + L1P LINE L1 1965 2736 -3410 * 9093 196 23 7 chr6 94863255 94866100 -87549142 + L1PBa LINE L1 1953 4891 -1971 40286 38 21 2 chr6 94866791 94872812 -87542430 + L1PA2 LINE L1 13 6155 0 33 0 0 0 chr6 94872916 94872949 -87542293 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr6 94873085 94873108 -87542134 + (CATA)n Simple_repeat Simple_repeat 3 25 0 521 248 0 51 chr6 94873349 94873506 -87541736 - MLT1J LTR MaLR -312 199 51 22 35 0 0 chr6 94873946 94873975 -87541267 + AT_rich Low_complexity Low_complexity 1 29 0 608 116 0 0 chr6 94874226 94874312 -87540930 + AluS SINE Alu 1 86 -227 412 186 14 0 chr6 94874320 94874390 -87540852 - AluJb SINE Alu -142 170 100 23 0 0 0 chr6 94874585 94874608 -87540634 + AT_rich Low_complexity Low_complexity 1 23 0 468 264 0 0 chr6 94875184 94875290 -87539952 - MER81 DNA DNA -7 107 2 858 209 13 60 chr6 94875724 94875958 -87539284 + L1MC3 LINE L1 6504 6726 -1059 458 189 101 14 chr6 94875956 94876104 -87539138 + L1MD3 LINE L1 6889 7049 -736 * 576 299 97 36 chr6 94876582 94877193 -87538049 + HAL1 LINE L1 1251 1898 -609 387 171 0 0 chr6 94877420 94877496 -87537746 + (TA)n Simple_repeat Simple_repeat 2 77 0 246 324 11 28 chr6 94877505 94877684 -87537558 + HAL1 LINE L1 2217 2392 -115 35 54 0 0 chr6 94877744 94877800 -87537442 + AT_rich Low_complexity Low_complexity 1 56 0 329 284 89 37 chr6 94877987 94878177 -87537065 - L2 LINE L2 -5 3308 3109 274 239 9 28 chr6 94878288 94878397 -87536845 - L1MC4 LINE L1 -17 8025 7919 211 192 26 0 chr6 94878397 94878475 -87536767 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 302 279 58 39 chr6 94878483 94878587 -87536655 - L1MC4 LINE L1 -134 7908 7803 743 219 0 0 chr6 94878587 94878756 -87536486 + L1 LINE L1 3692 3860 -2286 * 5189 178 23 4 chr6 94878749 94879553 -87535689 + L1PA15 LINE L1 4491 5278 -887 2504 53 0 28 chr6 94879553 94879873 -87535369 + AluY SINE Alu 1 311 0 5189 178 23 4 chr6 94879873 94880694 -87534548 + L1PA15 LINE L1 5278 6149 -16 3836 143 20 18 chr6 94880707 94881394 -87533848 + L1PA16 LINE L1 5476 6164 -2 190 293 67 13 chr6 94881557 94881632 -87533610 + L3 LINE CR1 622 700 -877 390 85 0 0 chr6 94883610 94883669 -87531573 + (TC)n Simple_repeat Simple_repeat 2 60 0 1530 221 60 26 chr6 94884253 94884705 -87530537 + MLT1C LTR MaLR 1 467 0 535 260 20 56 chr6 94885120 94885316 -87529926 + MIR SINE MIR 21 209 -53 384 77 0 0 chr6 94886004 94886056 -87529186 + (CA)n Simple_repeat Simple_repeat 1 52 0 21 71 0 0 chr6 94887051 94887093 -87528149 + AT_rich Low_complexity Low_complexity 1 42 0 1593 193 21 47 chr6 94887484 94887867 -87527375 + MLT1A2 LTR MaLR 2 374 0 469 290 0 74 chr6 94888011 94888173 -87527069 - MER5B DNA MER1_type -28 150 1 4050 63 25 0 chr6 94888604 94889127 -87526115 + L1PA8 LINE L1 5624 6159 -13 22 0 0 0 chr6 94889127 94889149 -87526093 + AT_rich Low_complexity Low_complexity 1 22 0 270 338 0 0 chr6 94889978 94890055 -87525187 + MIR SINE MIR 20 96 -166 42064 38 1 1 chr6 94890239 94896441 -87518801 + L1PA3 LINE L1 2 6202 0 767 284 33 0 chr6 94896534 94896749 -87518493 + MIR SINE MIR 29 250 -12 1175 238 53 27 chr6 94896895 94897106 -87518136 + L1ME1 LINE L1 5739 5943 -223 2179 100 4 0 chr6 94897106 94897420 -87517822 + AluSp SINE Alu 5 319 0 1175 238 53 27 chr6 94897420 94897619 -87517623 + L1ME1 LINE L1 5943 6161 -5 23 0 0 0 chr6 94897619 94897642 -87517600 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 94897780 94897808 -87517434 + AT_rich Low_complexity Low_complexity 1 28 0 494 247 74 47 chr6 94897999 94898189 -87517053 + MIR SINE MIR 20 214 -48 186 318 35 12 chr6 94898821 94898906 -87516336 + L2 LINE L2 2286 2372 -942 1227 117 0 5 chr6 94899064 94899270 -87515972 - L1MA5A LINE L1 0 6297 6093 21 36 0 0 chr6 94899276 94899304 -87515938 + AT_rich Low_complexity Low_complexity 1 28 0 268 167 42 0 chr6 94899313 94899361 -87515881 - L2 LINE L2 0 3313 3264 3628 43 16 0 chr6 94899909 94900352 -87514890 - L1PA7 LINE L1 -2 6152 5703 2135 116 0 30 chr6 94900472 94900775 -87514467 - AluSx SINE Alu -18 294 1 258 373 92 20 chr6 94901096 94901391 -87513851 - L2 LINE L2 -1217 2097 1782 573 259 109 18 chr6 94901619 94901839 -87513403 - MIR SINE MIR 0 262 23 1642 76 56 0 chr6 94902157 94902408 -87512834 + L1MA1 LINE L1 6038 6302 0 539 277 150 27 chr6 94903382 94903642 -87511600 + MLT1I LTR MaLR 98 389 -20 198 298 21 0 chr6 94903961 94904008 -87511234 - L2 LINE L2 -72 3200 3153 239 328 118 92 chr6 94904204 94904442 -87510800 + L2 LINE L2 3029 3272 0 181 200 50 0 chr6 94905469 94905509 -87509733 + L3 LINE CR1 1528 1569 -8 203 186 0 17 chr6 94906542 94906601 -87508641 + CT-rich Low_complexity Low_complexity 1 58 0 1783 208 0 0 chr6 94909327 94909639 -87505603 + AluJb SINE Alu 1 312 0 593 95 0 11 chr6 94910889 94910984 -87504258 + (GGAA)n Simple_repeat Simple_repeat 4 97 0 513 211 157 24 chr6 94912699 94912865 -87502377 + MIR SINE MIR 6 193 -69 1489 220 39 91 chr6 94912873 94913431 -87501811 - MLT1F1 LTR MaLR -13 554 1 292 312 69 2 chr6 94913645 94913754 -87501488 + MIR SINE MIR 40 163 -75 6505 121 32 48 chr6 94913774 94914311 -87500931 + Tigger3b DNA MER2_type 1 545 -2483 1859 118 19 4 chr6 94914311 94914601 -87500641 - AluSx SINE Alu 0 309 16 6505 121 32 48 chr6 94914601 94914795 -87500447 + Tigger3b DNA MER2_type 545 741 -2287 2062 139 0 13 chr6 94914795 94915112 -87500130 - AluSq SINE Alu 0 313 1 6505 121 32 48 chr6 94915112 94915603 -87499639 + Tigger3b DNA MER2_type 741 1205 -26 2415 75 3 0 chr6 94915908 94916200 -87499042 + AluSp SINE Alu 1 293 -20 21 36 0 0 chr6 94916264 94916292 -87498950 + AT_rich Low_complexity Low_complexity 1 28 0 483 219 36 7 chr6 94916534 94916671 -87498571 - L1ME4a LINE L1 0 6121 5981 2805 72 0 13 chr6 94916934 94917307 -87497935 - L1PA8 LINE L1 0 6172 5805 420 209 64 17 chr6 94917327 94917499 -87497743 - L1ME4a LINE L1 -267 5854 5675 857 287 111 24 chr6 94917722 94918147 -87497095 + MLT1K LTR MaLR 101 562 -26 595 280 52 33 chr6 94918215 94918426 -87496816 + MIR SINE MIR 37 251 -11 180 360 52 66 chr6 94918451 94918587 -87496655 - MIR3 SINE MIR -64 144 11 58 47 0 0 chr6 94918759 94918845 -87496397 + AT_rich Low_complexity Low_complexity 1 86 0 691 236 54 74 chr6 94919498 94919740 -87495502 + MIR SINE MIR 13 249 -13 267 360 88 15 chr6 94919761 94919897 -87495345 + MIR3 SINE MIR 52 197 -11 324 48 0 0 chr6 94921554 94921596 -87493646 + (CA)n Simple_repeat Simple_repeat 2 43 0 255 206 44 0 chr6 94922314 94922382 -87492860 - MLT1G LTR MaLR -1 589 519 627 221 78 46 chr6 94922594 94922780 -87492462 - MLT1H LTR MaLR -251 298 103 2148 137 132 5 chr6 94922780 94923160 -87492082 - MSTA LTR MaLR 0 428 1 627 221 78 46 chr6 94923160 94923190 -87492052 - MLT1H LTR MaLR -446 103 75 906 150 0 0 chr6 94924591 94924731 -87490511 + MLT1E1 LTR MaLR 515 654 0 192 77 0 0 chr6 94924805 94924831 -87490411 + (TG)n Simple_repeat Simple_repeat 2 27 0 4551 140 43 26 chr6 94924936 94925787 -87489455 + MER4D LTR ERV1 1 866 -37 328 87 0 0 chr6 94925754 94925800 -87489442 + MER4C LTR ERV1 393 438 -27 * 21 0 0 0 chr6 94925800 94925821 -87489421 + AT_rich Low_complexity Low_complexity 1 21 0 290 364 60 22 chr6 94925821 94926005 -87489237 + MIR SINE MIR 37 227 -35 2150 70 0 0 chr6 94927131 94927389 -87487853 - AluY SINE Alu -11 300 43 608 307 92 28 chr6 94927434 94927717 -87487525 + L2 LINE L2 3013 3313 0 1942 146 3 15 chr6 94927969 94928011 -87487231 - MLT2D LTR ERVL 0 414 373 414 0 0 0 chr6 94928011 94928057 -87487185 + (TG)n Simple_repeat Simple_repeat 2 47 0 1942 146 3 15 chr6 94928057 94928343 -87486899 - MLT2D LTR ERVL -41 373 90 1383 186 4 16 chr6 94928371 94928629 -87486613 + AluJb SINE Alu 1 255 -57 352 123 46 15 chr6 94928629 94928694 -87486548 - MLT2D LTR ERVL -345 69 3 1572 170 68 47 chr6 94929150 94929533 -87485709 - MSTD LTR MaLR 0 396 6 262 289 132 26 chr6 94929714 94929828 -87485414 + MIR3 SINE MIR 11 136 -72 24 0 0 0 chr6 94930436 94930460 -87484782 + AT_rich Low_complexity Low_complexity 1 24 0 317 250 147 52 chr6 94931420 94931438 -87483804 - L2 LINE L2 -2 3311 3296 6703 116 58 48 chr6 94931438 94931629 -87483613 + Tigger3b DNA MER2_type 1 188 -2840 2133 154 0 0 chr6 94931629 94931940 -87483302 + AluSx SINE Alu 1 311 -1 6703 116 58 48 chr6 94931940 94932965 -87482277 + Tigger3b DNA MER2_type 188 1230 -1 317 250 147 52 chr6 94932965 94933082 -87482160 - L2 LINE L2 -17 3296 3163 21 0 0 0 chr6 94933935 94933956 -87481286 + AT_rich Low_complexity Low_complexity 1 21 0 629 247 5 54 chr6 94934464 94934650 -87480592 - MER5B DNA MER1_type 0 178 2 2115 84 0 0 chr6 94934801 94935085 -87480157 + L1PB1 LINE L1 5867 6150 -1 222 338 26 0 chr6 94935485 94935562 -87479680 + MIR SINE MIR 20 98 -164 326 299 8 8 chr6 94935573 94935690 -87479552 + MLT1G1 LTR MaLR 16 132 -463 198 293 35 0 chr6 94936055 94936113 -87479129 - L3 LINE CR1 -3 1574 1515 184 339 71 0 chr6 94936593 94936649 -87478593 - L2 LINE L2 -6 3307 3248 1232 257 78 45 chr6 94937131 94937710 -87477532 - L1MC4a LINE L1 -1882 5926 5329 489 302 111 26 chr6 94937716 94938141 -87477101 - L1MC4a LINE L1 -824 5322 4861 184 360 124 22 chr6 94938518 94938696 -87476546 + L2 LINE L2 2967 3162 -110 321 257 38 71 chr6 94938760 94938943 -87476299 + MLT1K LTR MaLR 86 262 -326 253 262 178 26 chr6 94938975 94939166 -87476076 + MLT1K LTR MaLR 342 561 -27 235 309 131 0 chr6 94939206 94939290 -87475952 + L2 LINE L2 3161 3255 -17 198 363 12 12 chr6 94939372 94939452 -87475790 - MIR SINE MIR -162 100 21 522 172 33 33 chr6 94940767 94940889 -87474353 - L1PA16 LINE L1 -2 6164 6043 647 117 0 0 chr6 94940901 94940995 -87474247 - L1PA16 LINE L1 -179 5987 5894 314 269 65 11 chr6 94942295 94942372 -87472870 - L2 LINE L2 -665 2649 2565 429 36 0 0 chr6 94942372 94942427 -87472815 + (TG)n Simple_repeat Simple_repeat 2 56 0 314 269 65 11 chr6 94942427 94942442 -87472800 - L2 LINE L2 -749 2565 2552 479 210 14 14 chr6 94942676 94942814 -87472428 + LTR43 LTR ERV1 184 321 -281 225 301 77 49 chr6 94943027 94943170 -87472072 + L2 LINE L2 2938 3084 -188 1918 230 186 26 chr6 94943247 94944397 -87470845 - L1MC4 LINE L1 -97 7711 6451 222 37 0 0 chr6 94944962 94944989 -87470253 + (TC)n Simple_repeat Simple_repeat 2 28 0 270 0 0 0 chr6 94944992 94945022 -87470220 + (CA)n Simple_repeat Simple_repeat 2 31 0 4821 122 59 34 chr6 94946134 94947113 -87468129 - L1PA16 LINE L1 0 6166 5146 559 238 90 36 chr6 94947511 94947734 -87467508 + MLT1L LTR MaLR 377 611 -4 942 289 101 16 chr6 94948743 94949130 -87466112 - LTR33 LTR ERVL 0 521 102 2552 58 0 0 chr6 94949179 94949490 -87465752 + AluY SINE Alu 1 311 0 331 277 167 25 chr6 94950783 94950974 -87464268 - MIR SINE MIR -52 210 1 290 234 39 43 chr6 94951448 94951578 -87463664 - LTR16A1 LTR ERVL 0 457 318 1901 119 16 0 chr6 94952557 94952867 -87462375 + L1MA4 LINE L1 5962 6276 -24 26 0 0 0 chr6 94952991 94953017 -87462225 + AT_rich Low_complexity Low_complexity 1 26 0 706 306 114 18 chr6 94953630 94953963 -87461279 - MLT1J2 LTR MaLR -2 448 84 230 337 65 0 chr6 94954774 94954866 -87460376 + L2 LINE L2 3133 3230 -42 275 274 77 8 chr6 94956157 94956274 -87458968 - MER117 DNA MER1_type -5 192 68 540 223 13 45 chr6 94956538 94956695 -87458547 + MER3 DNA MER1_type 1 152 -57 1181 202 80 40 chr6 94956704 94957055 -87458187 - MLT1A1 LTR MaLR 0 365 1 344 293 140 7 chr6 94957093 94957243 -87457999 - MIR SINE MIR -64 198 29 1489 238 87 20 chr6 94957377 94957836 -87457406 - LTR40a LTR ERVL -7 512 23 274 351 82 15 chr6 94958756 94958890 -87456352 - MIR3 SINE MIR -7 201 59 823 107 0 0 chr6 94959573 94959704 -87455538 + L1MC3 LINE L1 6894 7024 -761 336 147 69 39 chr6 94959781 94959883 -87455359 + L1MD3 LINE L1 7011 7115 -880 294 250 25 12 chr6 94959890 94959970 -87455272 + MLT1F1 LTR MaLR 39 119 -448 2571 181 33 16 chr6 94959974 94960553 -87454689 + L1MD3 LINE L1 7402 7990 -5 509 293 30 6 chr6 94961730 94961894 -87453348 - MIR SINE MIR -6 256 89 649 230 115 54 chr6 94961926 94962204 -87453038 - MLT1J2 LTR MaLR -41 409 115 231 125 21 0 chr6 94962205 94962253 -87452989 + L1MDa LINE L1 314 362 -6178 * 490 155 19 0 chr6 94962248 94962351 -87452891 + L1MD3 LINE L1 7891 7995 0 4965 192 57 42 chr6 94962701 94964242 -87451000 + L1MDa LINE L1 921 2438 -4102 828 136 0 0 chr6 94964242 94964360 -87450882 + FLAM_C SINE Alu 1 118 -15 306 0 0 0 chr6 94964366 94964400 -87450842 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 4965 192 57 42 chr6 94964400 94964457 -87450785 + L1MDa LINE L1 2442 2497 -4043 2521 87 0 0 chr6 94964457 94964769 -87450473 + AluSx SINE Alu 1 312 0 4965 192 57 42 chr6 94964769 94965474 -87449768 + L1MDa LINE L1 2497 3328 -3212 3033 245 64 41 chr6 94965479 94966784 -87448458 + L1MDa LINE L1 3569 4903 -1637 * 3172 262 39 11 chr6 94966773 94968001 -87447241 + L1MCa LINE L1 2367 3632 -2794 1944 147 0 25 chr6 94968016 94968335 -87446907 - AluSx SINE Alu -1 311 1 14675 160 22 10 chr6 94969422 94970498 -87444744 + L1MA3 LINE L1 2585 3647 -4077 2592 164 31 9 chr6 94970498 94970949 -87444293 - LOR1b LTR ERV1 0 461 1 14675 160 22 10 chr6 94970949 94971178 -87444064 + L1MA3 LINE L1 3647 3872 -3852 4476 87 193 13 chr6 94971178 94971878 -87443364 - LTR12 LTR ERV1 0 826 1 14675 160 22 10 chr6 94971878 94972329 -87442913 + L1MA3 LINE L1 3872 4316 -3408 2203 132 0 3 chr6 94972329 94972640 -87442602 + AluSx SINE Alu 1 310 -2 14675 160 22 10 chr6 94972640 94975440 -87439802 + L1MA3 LINE L1 4316 7202 -522 5324 73 7 3 chr6 94975441 94976168 -87439074 + L1PA10 LINE L1 5435 6164 -4 3380 103 17 13 chr6 94976171 94976705 -87438537 + L1MA3 LINE L1 7188 7723 -1 1842 169 7 0 chr6 94976727 94977017 -87438225 + AluJb SINE Alu 1 292 -20 435 197 38 23 chr6 94977017 94977149 -87438093 + L1M4 LINE L1 5156 5289 -857 330 325 66 13 chr6 94977857 94978008 -87437234 - L1ME3A LINE L1 -51 6119 5961 6331 70 8 54 chr6 94978132 94979132 -87436110 - SVA Other Other 0 1386 433 850 23 0 15 chr6 94979149 94979879 -87435363 - SVA Other Other -520 866 737 272 289 25 25 chr6 94980004 94980125 -87435117 - L1MC5 LINE L1 -517 7444 7324 1530 151 4 8 chr6 94981384 94981643 -87433599 + L1PA15 LINE L1 5908 6165 0 694 275 22 60 chr6 94981762 94982019 -87433223 - MIR SINE MIR -3 259 8 308 98 0 0 chr6 94982576 94982617 -87432625 - Alu SINE Alu -257 46 6 23 78 0 0 chr6 94982752 94982803 -87432439 + AT_rich Low_complexity Low_complexity 1 51 0 1501 53 5 0 chr6 94982851 94983058 -87432184 + L1PA7 LINE L1 5277 5484 -670 2120 72 0 0 chr6 94983058 94983368 -87431874 + L1PA6 LINE L1 5861 6176 0 * 5238 61 4 4 chr6 94983367 94984038 -87431204 + L1PA7 LINE L1 5478 6153 -1 25 31 0 0 chr6 94984119 94984151 -87431091 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr6 94985627 94985653 -87429589 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2176 121 0 0 chr6 94986473 94986771 -87428471 + AluSx SINE Alu 1 298 -14 958 197 22 0 chr6 94988194 94988372 -87426870 + MER5A DNA MER1_type 7 188 -1 270 323 50 50 chr6 94988372 94988551 -87426691 + L2 LINE L2 2700 2878 -436 538 264 56 14 chr6 94988808 94988952 -87426290 + L2 LINE L2 3122 3271 -1 253 319 89 7 chr6 94990508 94990643 -87424599 + MER20B DNA MER1_type 34 179 -604 1982 154 7 0 chr6 94991618 94991911 -87423331 + AluSx SINE Alu 1 295 -17 592 135 50 7 chr6 94991911 94992045 -87423197 + GA-rich Low_complexity Low_complexity 6 148 0 180 0 0 0 chr6 94993369 94993389 -87421853 + (CA)n Simple_repeat Simple_repeat 1 20 0 304 299 140 93 chr6 94994928 94995349 -87419893 - L2 LINE L2 -5 3267 2827 533 281 0 22 chr6 94996010 94996145 -87419097 - L2 LINE L2 0 3272 3141 409 265 12 0 chr6 94996212 94996295 -87418947 - MER5A DNA MER1_type -96 93 10 254 250 59 88 chr6 94997717 94997853 -87417389 + MLT1K LTR MaLR 43 174 -414 299 241 96 0 chr6 94998236 94998319 -87416923 + MIR SINE MIR 122 212 -50 189 250 18 18 chr6 94998625 94998681 -87416561 - MIR3 SINE MIR -27 181 126 1779 175 12 63 chr6 94999917 95000328 -87414914 - MLT1B LTR MaLR 0 390 1 429 109 0 0 chr6 95000450 95000514 -87414728 + (TTGG)n Simple_repeat Simple_repeat 2 65 0 1785 158 18 4 chr6 95000517 95000795 -87414447 - AluJo SINE Alu -30 282 1 455 250 0 158 chr6 95001017 95001245 -87413997 - MIR SINE MIR -10 252 61 889 248 113 63 chr6 95001486 95002010 -87413232 + MLT1H1 LTR MaLR 3 552 -3 1723 175 177 2 chr6 95002859 95003157 -87412085 + L1MC3 LINE L1 6690 6935 -850 219 88 0 0 chr6 95003157 95003191 -87412051 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1723 175 177 2 chr6 95003191 95003327 -87411915 + L1MC3 LINE L1 6935 7200 -585 * 35994 63 11 0 chr6 95003325 95008188 -87407054 - L1P LINE L1 -1013 5133 221 1110 120 13 52 chr6 95058188 95058302 -87356940 + MER65A-int LTR ERV1 1230 1332 -6788 1900 148 7 14 chr6 95058302 95058599 -87356643 + AluJb SINE Alu 1 295 -17 1110 120 13 52 chr6 95058599 95058717 -87356525 + MER65A-int LTR ERV1 1332 1453 -6667 270 167 104 0 chr6 95058721 95058769 -87356473 + AluSp SINE Alu 128 180 -123 293 198 12 12 chr6 95058769 95058850 -87356392 + MER65A-int LTR ERV1 2414 2494 -2377 1295 184 42 103 chr6 95058953 95059512 -87355730 + MER65A-int LTR ERV1 1540 2205 -4553 1940 116 11 4 chr6 95059512 95059827 -87355415 - AluSc SINE Alu 0 321 5 1295 184 42 103 chr6 95059827 95060045 -87355197 + MER65A-int LTR ERV1 2205 2435 -4323 745 161 9 85 chr6 95060310 95060521 -87354721 + MER65A-int LTR ERV1 3536 3730 -2868 986 198 64 84 chr6 95060591 95060816 -87354426 + MER65A-int LTR ERV1 2477 2705 -3626 1580 158 28 87 chr6 95060816 95061139 -87354103 - AluJo SINE Alu -8 304 1 986 198 64 84 chr6 95061139 95061551 -87353691 + MER65A-int LTR ERV1 2705 3124 -3207 2239 82 10 3 chr6 95061551 95061842 -87353400 + AluSx SINE Alu 1 293 -19 986 198 64 84 chr6 95061842 95061899 -87353343 + MER65A-int LTR ERV1 3124 4418 -1913 * 1791 216 55 77 chr6 95061893 95062716 -87352526 + MER65A-int LTR ERV1 4290 5094 -1237 1746 234 67 22 chr6 95062890 95063386 -87351856 + MER65A-int LTR ERV1 3605 4122 -749 2409 217 67 10 chr6 95063396 95063996 -87351246 + MER65A-int LTR ERV1 4238 4871 0 2550 120 27 40 chr6 95063996 95064447 -87350795 + MER65A LTR ERV1 1 445 0 1054 199 149 11 chr6 95064453 95064729 -87350513 + MER21B LTR ERV1 529 842 -21 190 314 29 48 chr6 95064756 95064861 -87350381 - MIR SINE MIR -48 214 112 182 278 13 99 chr6 95064952 95065103 -87350139 - MIR SINE MIR 0 262 125 681 266 44 104 chr6 95065291 95065375 -87349867 - MLT1I LTR MaLR 0 409 321 1846 196 3 0 chr6 95065375 95065686 -87349556 - AluJo SINE Alu 0 312 1 681 266 44 104 chr6 95065686 95065966 -87349276 - MLT1I LTR MaLR -88 321 67 1191 235 28 0 chr6 95066857 95067112 -87348130 - Tigger7 DNA MER2_type -2225 262 1 5183 63 1 0 chr6 95067213 95067866 -87347376 - L1PA8 LINE L1 0 6172 5519 1718 136 8 15 chr6 95067996 95068261 -87346981 + AluSx SINE Alu 1 263 -49 186 43 0 0 chr6 95068272 95068295 -87346947 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 712 235 29 49 chr6 95068375 95068540 -87346702 + Charlie2b DNA MER1_type 170 330 -2452 1911 119 16 19 chr6 95068540 95068852 -87346390 - L1PA11 LINE L1 0 6174 5864 712 235 29 49 chr6 95068852 95068929 -87346313 + Charlie2b DNA MER1_type 330 407 -2375 27 0 0 0 chr6 95069712 95069739 -87345503 + AT_rich Low_complexity Low_complexity 1 27 0 2073 108 0 43 chr6 95069741 95070065 -87345177 - AluSg SINE Alu 0 310 1 31 26 0 0 chr6 95071415 95071453 -87343789 + GC_rich Low_complexity Low_complexity 1 38 0 273 249 138 39 chr6 95071576 95071757 -87343485 + Charlie2b DNA MER1_type 472 670 -2112 817 152 0 0 chr6 95071899 95072039 -87343203 + FLAM_C SINE Alu 7 146 0 1028 159 0 0 chr6 95072039 95072190 -87343052 + AluJb SINE Alu 156 306 -6 1920 194 91 38 chr6 95072190 95072606 -87342636 + Charlie2a DNA MER1_type 1530 1992 -870 1976 166 0 13 chr6 95072606 95072920 -87342322 + AluJb SINE Alu 1 310 -2 1920 194 91 38 chr6 95072920 95073131 -87342111 + Charlie2a DNA MER1_type 1992 2190 -672 414 267 33 0 chr6 95073160 95073280 -87341962 + MIR SINE MIR 136 259 -3 1342 216 89 14 chr6 95073360 95073865 -87341377 + Charlie2a DNA MER1_type 2251 2793 -69 388 320 75 22 chr6 95074223 95074451 -87340791 - MLT1K LTR MaLR -64 524 285 2269 95 3 0 chr6 95074486 95074780 -87340462 + AluSx SINE Alu 1 295 -17 757 321 23 5 chr6 95074871 95075089 -87340153 + MIR SINE MIR 11 232 -30 308 256 0 0 chr6 95075566 95075652 -87339590 + GA-rich Low_complexity Low_complexity 1 86 0 378 0 0 0 chr6 95075671 95075713 -87339529 + (CA)n Simple_repeat Simple_repeat 2 43 0 286 222 141 20 chr6 95076178 95076277 -87338965 + MER46C DNA MER2_type 2 112 -226 400 112 0 72 chr6 95076370 95076522 -87338720 + (TA)n Simple_repeat Simple_repeat 2 142 0 424 90 5 95 chr6 95076624 95077023 -87338219 + (TA)n Simple_repeat Simple_repeat 1 363 0 565 69 6 91 chr6 95077060 95077422 -87337820 + (TA)n Simple_repeat Simple_repeat 1 330 0 452 106 0 85 chr6 95077433 95077621 -87337621 + (TA)n Simple_repeat Simple_repeat 1 172 0 498 88 5 88 chr6 95077671 95077863 -87337379 + (TA)n Simple_repeat Simple_repeat 2 177 0 21 36 0 0 chr6 95077892 95077920 -87337322 + AT_rich Low_complexity Low_complexity 1 28 0 212 167 12 83 chr6 95078432 95078516 -87336726 + T-rich Low_complexity Low_complexity 3 80 0 2202 115 16 0 chr6 95078519 95078824 -87336418 - AluSq SINE Alu -3 310 1 1601 186 0 7 chr6 95078826 95079116 -87336126 - AluJb SINE Alu -15 297 10 1707 187 27 19 chr6 95080024 95080393 -87334849 - MLT1A2 LTR MaLR -2 372 1 192 40 0 0 chr6 95080521 95080546 -87334696 + (CA)n Simple_repeat Simple_repeat 1 25 0 2038 116 34 10 chr6 95081189 95081483 -87333759 - AluSq SINE Alu -12 301 1 2609 111 72 17 chr6 95081868 95082328 -87332914 + MER31A LTR ERV1 1 485 0 3293 98 7 0 chr6 95082455 95082905 -87332337 - MLT2A2 LTR ERVL 0 453 1 460 130 20 90 chr6 95083038 95083138 -87332104 + MER2 DNA MER2_type 3 95 -250 36 0 0 0 chr6 95083157 95083193 -87332049 + AT_rich Low_complexity Low_complexity 1 36 0 1363 162 40 0 chr6 95083193 95083446 -87331796 + MER2 DNA MER2_type 83 345 0 21 36 0 0 chr6 95084123 95084151 -87331091 + AT_rich Low_complexity Low_complexity 1 28 0 223 230 46 11 chr6 95084155 95084242 -87331000 + T-rich Low_complexity Low_complexity 3 92 0 729 209 4 11 chr6 95085740 95086004 -87329238 + CT-rich Low_complexity Low_complexity 1 262 0 628 231 0 0 chr6 95086006 95086140 -87329102 - AluJb SINE Alu -8 304 171 2343 103 3 3 chr6 95086788 95087100 -87328142 - AluSq SINE Alu -1 312 1 1697 204 102 36 chr6 95087220 95087690 -87327552 - MLT1D LTR MaLR -3 502 2 395 318 75 69 chr6 95087913 95088246 -87326996 - L2 LINE L2 -823 2491 2157 6921 82 19 7 chr6 95088340 95094407 -87320835 + L1PA6 LINE L1 11 6149 -5 2090 138 0 3 chr6 95095549 95095847 -87319395 + AluSx SINE Alu 1 297 -15 204 40 0 0 chr6 95095847 95095872 -87319370 + (GGA)n Simple_repeat Simple_repeat 1 25 0 463 280 120 52 chr6 95096165 95096233 -87319009 + L1MC4a LINE L1 5543 5605 -2203 1715 168 17 7 chr6 95096233 95096530 -87318712 + AluJo SINE Alu 3 302 -10 463 280 120 52 chr6 95096530 95096904 -87318338 + L1MC4a LINE L1 5605 6015 -1793 21 0 0 0 chr6 95097020 95097041 -87318201 + AT_rich Low_complexity Low_complexity 1 21 0 285 167 39 90 chr6 95097317 95097395 -87317847 - L2 LINE L2 -17 3296 3223 383 315 21 21 chr6 95097600 95097743 -87317499 + MER5A DNA MER1_type 47 189 0 2332 97 0 0 chr6 95098738 95099048 -87316194 + AluSx SINE Alu 1 310 -2 2240 106 0 3 chr6 95099488 95099790 -87315452 + AluSx SINE Alu 1 301 -11 311 265 108 126 chr6 95100274 95100719 -87314523 - L1M2 LINE L1 -5692 1157 721 204 111 0 0 chr6 95101528 95101564 -87313678 + (TG)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr6 95101716 95101738 -87313504 + (A)n Simple_repeat Simple_repeat 1 22 0 273 292 88 26 chr6 95101873 95101986 -87313256 + L2 LINE L2 3143 3262 -10 1951 109 3 76 chr6 95106330 95106659 -87308583 - AluSx SINE Alu -7 305 1 1440 137 67 77 chr6 95107050 95107350 -87307892 + AluJb SINE Alu 11 307 -5 668 176 70 116 chr6 95108014 95108135 -87307107 - AluJo SINE Alu -3 309 199 1948 96 86 14 chr6 95108135 95108427 -87306815 - AluSp SINE Alu 0 313 1 668 176 70 116 chr6 95108427 95108504 -87306738 - AluJo SINE Alu -113 199 120 230 232 219 55 chr6 95108695 95108859 -87306383 - L2 LINE L2 -2 3311 3121 270 239 0 0 chr6 95109100 95109171 -87306071 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 351 215 19 9 chr6 95109242 95109349 -87305893 + (TATATG)n Simple_repeat Simple_repeat 3 110 0 338 242 48 32 chr6 95109423 95109547 -87305695 + MER20B DNA MER1_type 38 163 -620 1753 174 23 3 chr6 95110064 95110363 -87304879 - AluJo SINE Alu -7 305 1 244 293 0 27 chr6 95110758 95110833 -87304409 - L2 LINE L2 -183 3089 3017 2354 82 0 13 chr6 95111817 95112121 -87303121 + AluY SINE Alu 1 300 -11 351 220 50 66 chr6 95112703 95112913 -87302329 - MLT1H LTR MaLR 0 549 366 2072 100 3 10 chr6 95113410 95113710 -87301532 - AluSg SINE Alu -12 298 1 376 102 0 17 chr6 95114022 95114081 -87301161 + Tigger4(Zombi) DNA MER2_type 2672 2729 -2 228 273 0 0 chr6 95114126 95114181 -87301061 + MER112 DNA MER1_type 86 140 -120 299 246 0 0 chr6 95114210 95114267 -87300975 + MER112 DNA MER1_type 204 260 0 2135 107 3 0 chr6 95114401 95114692 -87300550 - AluSq SINE Alu -8 305 14 195 268 0 36 chr6 95115128 95115184 -87300058 + L2 LINE L2 3252 3305 -8 190 284 11 80 chr6 95115586 95115674 -87299568 - MIR SINE MIR -160 102 21 2042 137 0 16 chr6 95116050 95116357 -87298885 + AluSp SINE Alu 1 302 -11 2056 118 14 0 chr6 95117174 95117461 -87297781 - AluSq SINE Alu -22 291 1 864 137 8 0 chr6 95117513 95117644 -87297598 + MER2 DNA MER2_type 4 135 -210 2150 109 7 7 chr6 95117728 95118032 -87297210 - AluSx SINE Alu -8 304 1 323 234 13 0 chr6 95118037 95118114 -87297128 + MER2 DNA MER2_type 268 345 0 1827 165 7 3 chr6 95118336 95118639 -87296603 - AluJb SINE Alu -8 304 1 21 0 0 0 chr6 95118814 95118835 -87296407 + AT_rich Low_complexity Low_complexity 1 21 0 196 305 153 0 chr6 95119996 95120055 -87295187 + MIR SINE MIR 11 78 -184 469 210 89 8 chr6 95120335 95120459 -87294783 - MER33 DNA MER1_type -159 165 32 227 304 126 15 chr6 95120749 95120884 -87294358 + L2 LINE L2 3117 3266 -47 1933 148 17 3 chr6 95121317 95121607 -87293635 + AluJb SINE Alu 3 296 -16 1680 168 21 10 chr6 95124039 95124330 -87290912 - AluJo SINE Alu -18 294 1 325 223 116 18 chr6 95124423 95124535 -87290707 + Charlie8 DNA MER1_type 49 171 -2246 1620 223 29 36 chr6 95124781 95125229 -87290013 - MER39 LTR ERV1 -2 705 261 329 202 61 50 chr6 95125204 95125303 -87289939 - LTR48B LTR ERV1 -544 100 1 * 238 318 127 32 chr6 95125522 95125648 -87289594 + L2 LINE L2 2255 2392 -922 2323 88 7 0 chr6 95125737 95126033 -87289209 + AluSx SINE Alu 1 298 -14 380 287 245 0 chr6 95126344 95126487 -87288755 + MIR SINE MIR 15 192 -70 322 286 71 0 chr6 95127306 95127418 -87287824 - MIR SINE MIR -69 193 74 2154 119 0 3 chr6 95127850 95128152 -87287090 - AluSx SINE Alu -11 301 1 265 275 37 9 chr6 95128219 95128328 -87286914 - Charlie7 DNA MER1_type 0 2612 2501 386 242 65 81 chr6 95128661 95128744 -87286498 + LTR41 LTR ERVL 1 84 -689 781 111 345 0 chr6 95128744 95128841 -87286401 + MER30 DNA MER1_type 1 63 -167 266 26 53 0 chr6 95128841 95128879 -87286363 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 781 111 345 0 chr6 95128879 95128952 -87286290 + MER30 DNA MER1_type 63 230 0 386 242 65 81 chr6 95128952 95129054 -87286188 + LTR41 LTR ERVL 84 183 -590 287 301 89 59 chr6 95129376 95129579 -87285663 + LTR41 LTR ERVL 502 710 -63 3137 194 103 12 chr6 95129582 95130330 -87284912 - LTR1B LTR ERV1 -8 818 3 2176 97 0 7 chr6 95130366 95130656 -87284586 - AluSx SINE Alu -5 307 20 24 0 0 0 chr6 95131497 95131521 -87283721 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 95131988 95132013 -87283229 + AT_rich Low_complexity Low_complexity 1 25 0 10949 141 50 27 chr6 95132131 95134074 -87281168 - Ricksha_c DNA DNA 0 2046 59 1677 158 47 7 chr6 95134182 95134460 -87280782 - AluSx SINE Alu -23 289 1 21 0 0 0 chr6 95134475 95134496 -87280746 + AT_rich Low_complexity Low_complexity 1 21 0 2113 188 35 23 chr6 95134496 95134895 -87280347 - MER21B LTR ERV1 -371 492 89 945 191 0 0 chr6 95135289 95135441 -87279801 + AluJb SINE Alu 137 288 -24 2144 128 13 0 chr6 95136128 95136426 -87278816 + AluSx SINE Alu 1 302 -10 718 274 57 50 chr6 95136508 95136807 -87278435 - MER102b DNA MER1_type -1 340 40 1946 135 3 0 chr6 95137665 95137977 -87277265 + AluSx SINE Alu 1 313 0 3537 155 116 34 chr6 95137989 95138843 -87276399 - L1MC3 LINE L1 0 7785 6862 1969 94 0 0 chr6 95139208 95139476 -87275766 - AluSx SINE Alu 0 307 40 434 268 78 85 chr6 95139721 95139930 -87275312 - L1MC4a LINE L1 -151 5970 5764 1134 112 162 0 chr6 95139930 95140127 -87275115 + MER30 DNA MER1_type 1 229 -1 434 268 78 85 chr6 95140127 95140329 -87274913 - L1MC4a LINE L1 -357 5764 5562 2148 104 17 0 chr6 95140404 95140702 -87274540 - AluSx SINE Alu -8 304 2 22 0 0 0 chr6 95141438 95141460 -87273782 + AT_rich Low_complexity Low_complexity 1 22 0 236 317 12 0 chr6 95141498 95141580 -87273662 - L1M1 LINE L1 -520 5785 5703 611 195 41 0 chr6 95141744 95141867 -87273375 - AluSp/q SINE Alu -23 290 163 1288 165 75 26 chr6 95141884 95142006 -87273236 + Tigger4(Zombi) DNA MER2_type 1 116 -2615 1588 181 27 0 chr6 95142006 95142298 -87272944 + AluJb SINE Alu 1 300 -12 1288 165 75 26 chr6 95142298 95142442 -87272800 + Tigger4(Zombi) DNA MER2_type 116 280 -2451 * 1382 134 39 9 chr6 95142426 95142658 -87272584 + Tigger4(Zombi) DNA MER2_type 2493 2731 0 394 288 81 46 chr6 95143431 95143926 -87271316 + L1P LINE L1 3622 4144 -2002 1700 172 56 82 chr6 95144221 95144487 -87270755 - Tigger6 DNA MER2_type 0 1597 1350 2326 106 0 0 chr6 95144487 95144798 -87270444 + AluSx SINE Alu 1 311 -1 1700 172 56 82 chr6 95144798 95145066 -87270176 - Tigger6 DNA MER2_type -247 1350 1077 * 1993 209 50 12 chr6 95145063 95145483 -87269759 - Tigger6 DNA MER2_type -1161 436 1 316 270 138 88 chr6 95145772 95146068 -87269174 + L1ME LINE L1 5350 5660 -461 1963 116 55 14 chr6 95146194 95146487 -87268755 + AluSx SINE Alu 1 305 -7 2246 84 0 0 chr6 95146922 95147245 -87267997 - AluY SINE Alu 0 323 1 535 202 173 18 chr6 95147402 95147570 -87267672 - MER46C DNA MER2_type -8 330 137 2271 215 88 16 chr6 95147573 95148423 -87266819 - L1ME1 LINE L1 -334 5832 4909 832 282 87 45 chr6 95149940 95150147 -87265095 - L1M4 LINE L1 -906 5240 5043 2334 94 3 0 chr6 95150147 95150445 -87264797 - AluSp SINE Alu -14 299 1 832 282 87 45 chr6 95150445 95151142 -87264100 - L1M4 LINE L1 -1103 5043 4298 398 294 72 13 chr6 95151186 95151421 -87263821 - L1M4 LINE L1 -1932 4214 3966 1424 148 112 20 chr6 95151485 95151789 -87263453 + MER44D DNA MER2_type 8 609 0 1871 155 3 19 chr6 95151869 95152178 -87263064 - AluJb SINE Alu -2 310 7 1756 226 115 12 chr6 95152687 95153192 -87262050 + L1MC4 LINE L1 7345 7901 -141 22 0 0 0 chr6 95153240 95153262 -87261980 + AT_rich Low_complexity Low_complexity 1 22 0 231 310 12 53 chr6 95153265 95153296 -87261946 - L1M4 LINE L1 -2376 3770 3739 2376 94 0 0 chr6 95153296 95153605 -87261637 - AluSq SINE Alu -4 309 1 231 310 12 53 chr6 95153605 95153744 -87261498 - L1M4 LINE L1 -2407 3739 3607 1704 165 4 4 chr6 95153842 95154115 -87261127 - AluJo SINE Alu -39 273 1 477 306 46 59 chr6 95154330 95154637 -87260605 - L1M4 LINE L1 -2792 3354 3052 508 303 155 49 chr6 95154696 95155063 -87260179 - MLT1H LTR MaLR -143 406 1 985 217 81 23 chr6 95155102 95155411 -87259831 - L1MC4 LINE L1 -27 8015 7689 491 266 60 30 chr6 95156022 95156255 -87258987 - L1M4 LINE L1 -3119 3027 2788 2914 261 196 33 chr6 95156401 95158165 -87257077 - HAL1 LINE L1 -446 2061 11 1639 185 132 2 chr6 95158235 95158652 -87256590 + Charlie1b DNA MER1_type 53 523 0 21 0 0 0 chr6 95158993 95159014 -87256228 + AT_rich Low_complexity Low_complexity 1 21 0 394 179 28 38 chr6 95159026 95159132 -87256110 + MER106A DNA MER1_type 116 220 -16 687 298 75 23 chr6 95159266 95159281 -87255961 - Charlie8 DNA MER1_type -45 285 272 1868 106 4 0 chr6 95159281 95159545 -87255697 + AluY SINE Alu 41 305 -6 687 298 75 23 chr6 95159545 95159794 -87255448 - Charlie8 DNA MER1_type -58 272 7 599 341 30 19 chr6 95159846 95160116 -87255126 - L3 LINE CR1 -62 1515 1243 685 287 93 4 chr6 95160185 95160422 -87254820 + MIR SINE MIR 4 261 -1 187 333 30 0 chr6 95160421 95160487 -87254755 - L3 LINE CR1 -361 1216 1149 * 1967 233 72 31 chr6 95160742 95161325 -87253917 - MER21B LTR ERV1 -233 630 24 651 115 19 0 chr6 95161689 95161793 -87253449 - LTR49 LTR ERV1 0 595 490 361 209 118 19 chr6 95161792 95162005 -87253237 - LTR48 LTR ERV1 -192 594 206 * 2824 113 19 70 chr6 95162025 95162598 -87252644 - LTR10A LTR ERV1 -65 544 1 985 196 34 15 chr6 95162598 95162802 -87252440 - LTR48B LTR ERV1 -436 208 1 21 0 0 0 chr6 95164022 95164043 -87251199 + AT_rich Low_complexity Low_complexity 1 21 0 1806 132 62 7 chr6 95165623 95165896 -87249346 - AluSx SINE Alu -24 288 1 2099 120 7 7 chr6 95166013 95166312 -87248930 - AluSx SINE Alu -13 299 1 638 337 132 22 chr6 95166318 95166728 -87248514 - L3 LINE CR1 -343 1234 780 411 331 8 8 chr6 95166869 95166993 -87248249 - L3 LINE CR1 -827 750 627 194 259 157 65 chr6 95167226 95167334 -87247908 - MIR SINE MIR -111 151 34 456 146 11 41 chr6 95167510 95167783 -87247459 + (TA)n Simple_repeat Simple_repeat 1 264 0 350 151 11 43 chr6 95167796 95167982 -87247260 + (TA)n Simple_repeat Simple_repeat 1 180 0 1064 101 13 0 chr6 95168004 95168163 -87247079 + HERVL LTR ERVL 4862 5022 -632 417 120 0 62 chr6 95168182 95168374 -87246868 + (TA)n Simple_repeat Simple_repeat 1 180 0 2766 91 10 5 chr6 95168374 95168770 -87246472 - MLT2A1 LTR ERVL -46 398 1 5939 70 2 4 chr6 95168770 95169576 -87245666 - HERVL-A1 LTR ERVL 0 5654 4850 4156 71 4 0 chr6 95169711 95170259 -87244983 + L1PA7 LINE L1 5604 6153 -1 209 315 14 0 chr6 95170339 95170412 -87244830 - MIR SINE MIR -1 261 188 519 235 12 54 chr6 95170590 95170756 -87244486 + MIR SINE MIR 46 204 -58 28 29 0 0 chr6 95170757 95170792 -87244450 + AT_rich Low_complexity Low_complexity 1 35 0 222 91 0 0 chr6 95170804 95170837 -87244405 + (GA)n Simple_repeat Simple_repeat 1 33 0 1641 194 3 7 chr6 95171113 95171407 -87243835 - AluJo SINE Alu -19 293 1 490 322 37 35 chr6 95171430 95171843 -87243399 - HERVL68 LTR ERVL -2536 501 9 2796 199 35 0 chr6 95171895 95172438 -87242804 - MER68 LTR ERV1 0 562 1 2195 167 62 0 chr6 95172594 95173013 -87242229 + Tigger1 DNA MER2_type 1650 2094 -324 15702 98 5 2 chr6 95173217 95175630 -87239612 - L1P LINE L1 -804 5342 2923 652 248 114 42 chr6 95175736 95175998 -87239244 + L2 LINE L2 3026 3306 -7 187 375 11 0 chr6 95176181 95176269 -87238973 - L2 LINE L2 -1 3312 3224 2202 119 3 0 chr6 95176271 95176564 -87238678 + AluSc SINE Alu 1 294 -15 2670 174 35 40 chr6 95176613 95177010 -87238232 + L1MB2 LINE L1 5453 5847 -324 1702 147 0 57 chr6 95177010 95177309 -87237933 + AluJo SINE Alu 13 294 -18 2670 174 35 40 chr6 95177309 95177567 -87237675 + L1MB2 LINE L1 5847 6105 -66 2345 80 0 13 chr6 95177568 95177870 -87237372 + AluSx SINE Alu 2 299 -13 2692 7 0 0 chr6 95177870 95178161 -87237081 + AluYa5 SINE Alu 1 291 -20 1011 142 35 6 chr6 95179331 95179500 -87235742 - MSTD LTR MaLR 0 396 223 605 164 9 0 chr6 95179504 95179614 -87235628 - MSTD LTR MaLR -285 111 1 1366 41 0 6 chr6 95179721 95179893 -87235349 - L1MA1 LINE L1 0 6302 6132 220 280 40 0 chr6 95180421 95180471 -87234771 - L3 LINE CR1 -70 1507 1456 21 36 0 0 chr6 95180836 95180864 -87234378 + AT_rich Low_complexity Low_complexity 1 28 0 1700 157 25 21 chr6 95181272 95181576 -87233666 - AluJo SINE Alu 0 305 1 405 307 20 52 chr6 95181771 95181969 -87233273 - MIR SINE MIR -50 212 23 963 339 81 62 chr6 95182774 95183099 -87232143 - L3 LINE CR1 -10 1567 1250 233 116 0 0 chr6 95183099 95183142 -87232100 - L1MA3 LINE L1 0 6305 6263 963 339 81 62 chr6 95183142 95183876 -87231366 - L3 LINE CR1 -327 1250 445 282 27 0 0 chr6 95183891 95183928 -87231314 - L1MC3 LINE L1 -292 7493 7457 3967 103 140 125 chr6 95183990 95184513 -87230729 - L1MC3 LINE L1 0 7785 7271 1809 161 0 21 chr6 95184513 95184827 -87230415 - AluSx SINE Alu 0 308 1 3967 103 140 125 chr6 95184827 95184917 -87230325 - L1MC3 LINE L1 -514 7271 7184 309 250 34 0 chr6 95184917 95185005 -87230237 - MLT1F1 LTR MaLR -442 125 35 5673 159 65 63 chr6 95185005 95186996 -87228246 - L1MC3 LINE L1 -743 5403 4967 25 0 0 0 chr6 95187070 95187095 -87228147 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr6 95187944 95187978 -87227264 + AT_rich Low_complexity Low_complexity 1 34 0 321 93 0 0 chr6 95188072 95188126 -87227116 + (TA)n Simple_repeat Simple_repeat 1 54 0 2185 105 3 3 chr6 95188128 95188422 -87226820 - AluSx SINE Alu -18 294 1 512 218 20 0 chr6 95188669 95188770 -87226472 + MER5B DNA MER1_type 1 103 -75 4491 180 45 20 chr6 95188869 95190849 -87224393 - L1MB2 LINE L1 -2 6169 4140 2424 78 3 3 chr6 95190855 95191161 -87224081 - AluSp SINE Alu -7 306 1 348 300 101 58 chr6 95191219 95191392 -87223850 - L2 LINE L2 -536 2778 2614 204 40 0 0 chr6 95191392 95191417 -87223825 + (GGTTG)n Simple_repeat Simple_repeat 4 28 0 348 300 101 58 chr6 95191417 95191590 -87223652 - L2 LINE L2 -700 2614 2417 2433 66 0 3 chr6 95191887 95192188 -87223054 + AluY SINE Alu 1 300 -11 21 0 0 0 chr6 95192373 95192394 -87222848 + AT_rich Low_complexity Low_complexity 1 21 0 658 254 30 6 chr6 95192801 95192966 -87222276 + MIR3 SINE MIR 33 201 -7 21 36 0 0 chr6 95193994 95194022 -87221220 + AT_rich Low_complexity Low_complexity 1 28 0 2252 87 0 10 chr6 95195711 95196009 -87219233 + AluSg SINE Alu 1 295 -15 21 36 0 0 chr6 95196505 95196533 -87218709 + AT_rich Low_complexity Low_complexity 1 28 0 249 263 71 10 chr6 95197004 95197103 -87218139 + Charlie8 DNA MER1_type 116 220 -2197 22 0 0 0 chr6 95197816 95197838 -87217404 + AT_rich Low_complexity Low_complexity 1 22 0 516 295 183 3 chr6 95198220 95198505 -87216737 - L1MC4a LINE L1 -1944 5864 5529 1750 156 17 13 chr6 95198667 95198968 -87216274 - AluSx SINE Alu -10 302 1 23 0 0 0 chr6 95199600 95199623 -87215619 + AT_rich Low_complexity Low_complexity 1 23 0 2093 122 7 0 chr6 95199632 95199927 -87215315 + AluSx SINE Alu 1 297 -15 189 132 0 0 chr6 95200062 95200100 -87215142 + (T)n Simple_repeat Simple_repeat 1 38 0 9304 38 4 198 chr6 95200116 95201820 -87213422 - SVA Other Other -9 1377 5 2109 112 10 7 chr6 95201842 95202146 -87213096 - AluSq SINE Alu -8 305 1 302 302 88 2 chr6 95202308 95202412 -87212830 + MIR SINE MIR 20 132 -76 2108 103 0 7 chr6 95202429 95202739 -87212503 + AluSc SINE Alu 1 308 0 2014 149 10 3 chr6 95202844 95203146 -87212096 - AluSx SINE Alu -8 304 1 404 213 0 12 chr6 95203218 95203298 -87211944 + Tigger5 DNA MER2_type 1 79 -2244 313 273 0 0 chr6 95203299 95203376 -87211866 - Tigger5 DNA MER2_type -5 2318 2242 * 427 181 0 12 chr6 95203366 95203449 -87211793 + Tigger5 DNA MER2_type 2242 2323 0 208 304 25 51 chr6 95203634 95203713 -87211529 + MIR3 SINE MIR 3 79 -129 25 0 0 0 chr6 95204200 95204225 -87211017 + AT_rich Low_complexity Low_complexity 1 25 0 197 208 0 19 chr6 95206254 95206307 -87208935 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 2281 79 17 0 chr6 95206385 95206675 -87208567 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr6 95206719 95206740 -87208502 + AT_rich Low_complexity Low_complexity 1 21 0 2263 93 0 0 chr6 95207377 95207688 -87207554 + AluSg SINE Alu 1 311 0 270 307 98 53 chr6 95207723 95207987 -87207255 + L1MEd LINE L1 6 281 -5838 1566 180 46 11 chr6 95208009 95208292 -87206950 + AluSx SINE Alu 1 293 -19 1775 152 3 57 chr6 95208299 95208614 -87206628 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr6 95208720 95208740 -87206502 + (CATG)n Simple_repeat Simple_repeat 3 22 0 1132 273 92 40 chr6 95208742 95209395 -87205847 + L1MEd LINE L1 321 1007 -5112 706 181 8 8 chr6 95209888 95210021 -87205221 + FLAM_A SINE Alu 1 133 0 495 248 0 0 chr6 95210337 95210446 -87204796 - MER3 DNA MER1_type -99 110 2 1730 196 7 3 chr6 95210568 95210854 -87204388 - AluJb SINE Alu -25 287 1 2160 135 0 0 chr6 95211139 95211436 -87203806 - AluSx SINE Alu -15 297 1 192 40 0 0 chr6 95211450 95211475 -87203767 + (A)n Simple_repeat Simple_repeat 1 25 0 1101 180 115 50 chr6 95211526 95211596 -87203646 - MER2 DNA MER2_type 0 344 280 1442 163 77 63 chr6 95211596 95211896 -87203346 + AluJb SINE Alu 1 304 -8 1101 180 115 50 chr6 95211896 95212148 -87203094 - MER2 DNA MER2_type -64 280 1 231 239 0 0 chr6 95212378 95212424 -87202818 + L2 LINE L2 3250 3295 -18 261 375 68 24 chr6 95212489 95212740 -87202502 - L2 LINE L2 -337 2977 2716 2244 98 0 16 chr6 95213563 95213880 -87201362 - AluSq SINE Alu -1 312 1 1598 174 3 50 chr6 95214324 95214646 -87200596 - AluJo SINE Alu -5 307 1 2012 139 0 16 chr6 95214646 95214955 -87200287 - AluJb SINE Alu -8 304 1 462 273 62 40 chr6 95215665 95215841 -87199401 - MIR SINE MIR -11 251 72 28 29 0 0 chr6 95224933 95224968 -87190274 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 95225075 95225103 -87190139 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 95225161 95225182 -87190060 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 95225585 95225614 -87189628 + AT_rich Low_complexity Low_complexity 1 29 0 935 196 0 12 chr6 95226535 95226703 -87188539 - FRAM SINE Alu 0 166 1 1437 137 70 0 chr6 95226717 95226944 -87188298 - AluSx SINE Alu -69 243 1 274 309 62 0 chr6 95227461 95227558 -87187684 + L2 LINE L2 2955 3057 -256 685 325 275 24 chr6 95227675 95229038 -87186204 + L2 LINE L2 807 2589 -725 2013 112 74 3 chr6 95229038 95229323 -87185919 - AluSc SINE Alu -4 305 1 685 325 275 24 chr6 95229323 95229474 -87185768 + L2 LINE L2 2589 2701 -613 2258 118 0 0 chr6 95229669 95229965 -87185277 + AluSq SINE Alu 1 296 -17 456 311 107 39 chr6 95230081 95230493 -87184749 - L2 LINE L2 -480 2834 2395 262 282 244 34 chr6 95230623 95230914 -87184328 - L2 LINE L2 -1320 1994 1643 7612 149 34 19 chr6 95231037 95231088 -87184154 - L1MC/D LINE L1 -672 5489 5440 3213 82 24 7 chr6 95231088 95231551 -87183691 - L1PA13 LINE L1 0 6163 5693 7612 149 34 19 chr6 95231551 95232537 -87182705 - L1MC/D LINE L1 -721 5440 4489 2471 84 3 0 chr6 95232537 95232847 -87182395 - AluSp SINE Alu -2 311 1 7612 149 34 19 chr6 95232847 95233556 -87181686 - L1MC/D LINE L1 -1672 4489 3792 194 324 143 19 chr6 95233587 95233692 -87181550 + L2 LINE L2 3150 3267 -5 298 262 96 70 chr6 95233799 95234028 -87181214 - L2 LINE L2 -1159 2155 1921 185 260 219 18 chr6 95234550 95234719 -87180523 - L2 LINE L2 -2287 1027 825 706 203 91 0 chr6 95234868 95235011 -87180231 + FRAM SINE Alu 1 156 -20 835 238 44 22 chr6 95235379 95235606 -87179636 - MIR SINE MIR 0 262 31 299 51 38 51 chr6 95235758 95235837 -87179405 + (TA)n Simple_repeat Simple_repeat 1 78 0 201 147 0 0 chr6 95235893 95235927 -87179315 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 2369 83 10 0 chr6 95236590 95236892 -87178350 - AluY SINE Alu -6 305 1 243 275 113 0 chr6 95238048 95238128 -87177114 - MIR SINE MIR 0 262 174 213 39 0 0 chr6 95238277 95238303 -87176939 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr6 95238828 95238849 -87176393 + AT_rich Low_complexity Low_complexity 1 21 0 210 345 55 73 chr6 95239333 95239443 -87175799 - L2 LINE L2 -43 3229 3122 290 233 68 14 chr6 95239520 95239593 -87175649 - MIR SINE MIR -52 210 134 373 336 164 24 chr6 95239906 95240156 -87175086 - L3 LINE CR1 -2 1575 1291 278 306 105 74 chr6 95240191 95240554 -87174688 - L3 LINE CR1 -561 1016 643 240 263 110 107 chr6 95240598 95240952 -87174290 - MLT1J LTR MaLR -51 460 106 23 33 0 0 chr6 95241591 95241621 -87173621 + AT_rich Low_complexity Low_complexity 1 30 0 2227 119 3 0 chr6 95242052 95242354 -87172888 + AluSx SINE Alu 3 305 -7 753 191 21 14 chr6 95242354 95242495 -87172747 - FRAM SINE Alu -32 144 3 21 36 0 0 chr6 95242670 95242698 -87172544 + AT_rich Low_complexity Low_complexity 1 28 0 477 227 48 92 chr6 95242733 95242940 -87172302 - MLT1K LTR MaLR -11 577 380 275 347 201 7 chr6 95247211 95247784 -87167458 + L2 LINE L2 1793 2476 -838 236 30 30 0 chr6 95248185 95248218 -87167024 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 241 242 179 10 chr6 95248219 95248332 -87166910 - MIR SINE MIR -64 144 34 1057 176 9 44 chr6 95248343 95248570 -87166672 - MER20 DNA MER1_type 0 219 1 186 372 23 23 chr6 95248594 95248680 -87166562 + MIR SINE MIR 45 130 -78 2210 111 0 0 chr6 95249337 95249625 -87165617 - AluSg SINE Alu -22 288 1 1296 271 106 62 chr6 95249929 95250656 -87164586 + L2 LINE L2 2218 2976 -338 302 305 51 56 chr6 95251536 95251733 -87163509 - MIR3 SINE MIR -51 157 20 1001 178 14 10 chr6 95252137 95252345 -87162897 + MER58A DNA MER1_type 7 215 -9 28 29 0 0 chr6 95252759 95252794 -87162448 + AT_rich Low_complexity Low_complexity 1 35 0 271 266 63 114 chr6 95254172 95254330 -87160912 - MIR3 SINE MIR -15 193 44 2173 89 4 0 chr6 95254477 95254789 -87160453 - AluSc SINE Alu 0 313 1 233 29 29 0 chr6 95254899 95254933 -87160309 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 599 306 48 10 chr6 95256036 95256242 -87159000 + L3 LINE CR1 1007 1220 -357 486 321 24 12 chr6 95256330 95256495 -87158747 + MIR SINE MIR 25 191 -71 180 311 0 0 chr6 95258034 95258079 -87157163 + L2 LINE L2 3261 3305 -8 1843 243 102 12 chr6 95258388 95258906 -87156336 + MER69 DNA AcHobo 4 568 -658 427 222 111 34 chr6 95258895 95259129 -87156113 + MER69 DNA AcHobo 2010 2261 -265 * 39986 57 3 1 chr6 95262505 95268652 -87146590 + L1PA3 LINE L1 2 6155 0 371 289 110 32 chr6 95268645 95268686 -87146556 + L1MDa LINE L1 1262 1298 -5423 * 7288 48 0 0 chr6 95268686 95269843 -87145399 + L1PA5 LINE L1 4992 6148 -6 371 289 110 32 chr6 95269843 95270401 -87144841 + L1MDa LINE L1 1298 1949 -4772 1626 222 81 3 chr6 95270576 95270959 -87144283 + MLT2F LTR ERVL 184 596 -67 606 83 31 0 chr6 95270994 95271090 -87144152 - LTR47A LTR ERVL -2 450 352 329 207 149 0 chr6 95271138 95271225 -87144017 - LTR47A LTR ERVL -92 360 261 1077 228 16 75 chr6 95271469 95271962 -87143280 + L1M4 LINE L1 4841 5305 -841 1073 108 0 0 chr6 95271962 95272120 -87143122 + L1PB1 LINE L1 5994 6151 0 576 199 24 30 chr6 95272283 95272449 -87142793 + L1ME3A LINE L1 4968 5132 -1014 1510 173 105 8 chr6 95272501 95272882 -87142360 + L1ME3A LINE L1 5374 5791 -379 765 229 174 14 chr6 95272883 95273158 -87142084 - MER110 LTR ERV1 -7 484 166 688 238 29 45 chr6 95273425 95273669 -87141573 + L1ME3A LINE L1 5926 6165 -5 2335 99 0 3 chr6 95273692 95273994 -87141248 + AluSg1 SINE Alu 1 301 -8 903 199 44 6 chr6 95275223 95275404 -87139838 + MER5A DNA MER1_type 1 188 -1 280 235 74 0 chr6 95276325 95276406 -87138836 - L2 LINE L2 -94 3219 3133 477 334 62 30 chr6 95276739 95276970 -87138272 + MLT1K LTR MaLR 155 406 -182 2129 140 0 13 chr6 95276970 95277285 -87137957 + AluSx SINE Alu 1 311 -1 477 334 62 30 chr6 95277285 95277457 -87137785 + MLT1K LTR MaLR 406 571 -17 246 320 75 7 chr6 95278084 95278231 -87137011 + L2 LINE L2 1992 2148 -1166 275 350 49 107 chr6 95278326 95278533 -87136709 + L2 LINE L2 2919 3136 -136 1966 158 0 29 chr6 95278533 95278849 -87136393 + AluSx SINE Alu 1 307 -5 275 350 49 107 chr6 95278849 95278888 -87136354 + L2 LINE L2 3136 3176 -96 2397 89 0 3 chr6 95278888 95279191 -87136051 - AluSq SINE Alu -11 302 1 275 350 49 107 chr6 95279191 95279289 -87135953 + L2 LINE L2 3176 3244 -28 27 49 0 0 chr6 95279411 95279452 -87135790 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr6 95279578 95279609 -87135633 + AT_rich Low_complexity Low_complexity 1 31 0 294 245 20 92 chr6 95279945 95280043 -87135199 - MLT1H LTR MaLR -206 343 253 3910 100 35 9 chr6 95281129 95281758 -87133484 + L1MA3 LINE L1 5637 6281 -24 26 0 0 0 chr6 95281758 95281784 -87133458 + AT_rich Low_complexity Low_complexity 1 26 0 5228 106 28 52 chr6 95281925 95282397 -87132845 - MER4D LTR ERV1 0 872 429 2320 97 0 26 chr6 95282397 95282705 -87132537 + AluSx SINE Alu 1 300 -12 5228 106 28 52 chr6 95282705 95283122 -87132120 - MER4D LTR ERV1 -443 429 4 1297 170 109 64 chr6 95283123 95283301 -87131941 - THE1C LTR MaLR 0 375 206 186 43 0 0 chr6 95283301 95283324 -87131918 + (GA)n Simple_repeat Simple_repeat 1 23 0 1297 170 109 64 chr6 95283324 95283504 -87131738 - THE1C LTR MaLR -169 206 1 39970 40 26 1 chr6 95284739 95290739 -87124503 - L1PA3 LINE L1 0 6155 2 2110 95 0 52 chr6 95290744 95291050 -87124192 - AluSx SINE Alu -21 291 2 22 94 0 0 chr6 95291095 95291159 -87124083 + AT_rich Low_complexity Low_complexity 1 64 0 299 264 100 43 chr6 95291372 95291512 -87123730 - MIR SINE MIR -61 201 54 219 36 0 0 chr6 95293058 95293086 -87122156 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 186 43 0 0 chr6 95293781 95293804 -87121438 + (TA)n Simple_repeat Simple_repeat 2 24 0 297 148 115 0 chr6 95293805 95293866 -87121376 + MSTB1 LTR MaLR 93 160 -272 229 202 44 35 chr6 95293926 95294040 -87121202 + (TATAA)n Simple_repeat Simple_repeat 2 116 0 3000 102 14 12 chr6 95294436 95294867 -87120375 - MSTB1 LTR MaLR 0 432 1 2636 151 24 2 chr6 95295300 95295717 -87119525 - MSTB LTR MaLR 0 426 1 270 0 0 0 chr6 95295895 95295925 -87119317 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 620 162 0 0 chr6 95295965 95296064 -87119178 - AluJ/FLAM SINE Alu -213 99 1 1475 131 20 81 chr6 95297201 95297498 -87117744 + AluJo SINE Alu 14 292 -20 1618 179 8 4 chr6 95299120 95299388 -87115854 - AluJo SINE Alu -43 269 1 36 77 0 0 chr6 95299391 95299469 -87115773 + AT_rich Low_complexity Low_complexity 1 78 0 1250 181 83 62 chr6 95299730 95300166 -87115076 - LTR56 LTR ERV1 0 445 1 180 0 0 0 chr6 95300367 95300387 -87114855 + (T)n Simple_repeat Simple_repeat 1 20 0 595 237 108 7 chr6 95300389 95300528 -87114714 + AluJo SINE Alu 3 155 -157 1474 154 21 9 chr6 95300529 95300762 -87114480 + AluJo SINE Alu 47 282 -30 423 0 0 0 chr6 95300786 95300833 -87114409 + (TG)n Simple_repeat Simple_repeat 1 47 0 417 20 0 0 chr6 95300874 95300924 -87114318 + (TG)n Simple_repeat Simple_repeat 2 51 0 254 349 80 19 chr6 95303796 95303956 -87111286 - MIR3 SINE MIR -34 174 4 748 279 109 7 chr6 95304078 95304354 -87110888 - MER110 LTR ERV1 0 491 188 397 269 87 0 chr6 95304520 95304624 -87110618 + MER81 DNA DNA 1 113 -1 1854 189 100 30 chr6 95305307 95305756 -87109486 + MLT1D LTR MaLR 1 486 -19 2262 128 107 15 chr6 95305756 95306148 -87109094 + MSTC LTR MaLR 1 428 0 1854 189 100 30 chr6 95306148 95306170 -87109072 + MLT1D LTR MaLR 486 505 0 450 250 156 0 chr6 95306841 95307021 -87108221 + MIR SINE MIR 49 256 -6 2268 108 17 0 chr6 95307104 95307401 -87107841 + AluSx SINE Alu 5 306 -6 1422 225 106 8 chr6 95308273 95308766 -87106476 - L1MD2 LINE L1 -4 6355 5815 232 196 18 54 chr6 95308777 95308833 -87106409 - MER5B DNA MER1_type -123 55 2 295 274 20 10 chr6 95309082 95309184 -87106058 - MLT1K LTR MaLR -16 572 470 2201 108 3 0 chr6 95309334 95309630 -87105612 + AluSx SINE Alu 1 297 -15 514 234 179 0 chr6 95310476 95310621 -87104621 + MIR SINE MIR 77 247 -15 240 194 0 16 chr6 95311478 95311540 -87103702 + L1ME4a LINE L1 6052 6112 -9 408 281 150 24 chr6 95312163 95312416 -87102826 + L2 LINE L2 3028 3312 -1 237 252 293 48 chr6 95313716 95313863 -87101379 + MER5A DNA MER1_type 7 189 0 1133 128 12 0 chr6 95314726 95314916 -87100326 + L1MA3 LINE L1 6098 6303 0 1967 142 10 26 chr6 95315307 95315618 -87099624 - AluSx SINE Alu -5 307 2 227 293 120 0 chr6 95316618 95316693 -87098549 + MIR SINE MIR 32 115 -93 1906 165 0 0 chr6 95316739 95317030 -87098212 + AluJb SINE Alu 1 291 -21 183 333 75 11 chr6 95317148 95317241 -87098001 + L2 LINE L2 3136 3234 -38 238 263 66 75 chr6 95318427 95318655 -87096587 - L1ME4a LINE L1 -1 6120 5895 392 273 0 0 chr6 95319385 95319473 -87095769 + L2 LINE L2 3223 3310 -3 181 328 127 16 chr6 95319672 95319788 -87095454 + L3b LINE CR1 1347 1449 -134 2450 62 3 0 chr6 95319788 95320080 -87095162 + AluY SINE Alu 3 295 -16 181 328 127 16 chr6 95320080 95320152 -87095090 + L3b LINE CR1 1449 1556 -27 315 311 28 9 chr6 95320310 95320416 -87094826 - MIR SINE MIR -148 114 7 195 176 20 59 chr6 95321679 95321730 -87093512 - L3 LINE CR1 -373 1204 1156 2130 123 7 13 chr6 95321859 95322161 -87093081 - AluSx SINE Alu -12 300 1 270 284 37 49 chr6 95322265 95322346 -87092896 - L2 LINE L2 0 3272 3193 1826 157 51 0 chr6 95322477 95322771 -87092471 + AluJb SINE Alu 1 309 -3 231 366 44 40 chr6 95323142 95323415 -87091827 + L2 LINE L2 2379 2652 -662 220 276 26 13 chr6 95323563 95323639 -87091603 + MIR SINE MIR 79 155 -107 2004 138 0 0 chr6 95323655 95323931 -87091311 + AluSx SINE Alu 1 276 -36 414 233 26 17 chr6 95323931 95324047 -87091195 + MIR SINE MIR 131 247 -15 543 286 42 42 chr6 95324390 95324649 -87090593 + MIR SINE MIR 3 261 -1 1563 192 134 70 chr6 95324700 95324813 -87090429 + Charlie1b DNA MER1_type 1 105 -2656 4423 29 0 0 chr6 95324813 95325297 -87089945 - L1PA3 LINE L1 -7 6148 5665 1563 192 134 70 chr6 95325297 95325462 -87089780 + Charlie1b DNA MER1_type 105 258 -2503 1926 155 7 3 chr6 95325462 95325752 -87089490 + AluSx SINE Alu 1 291 -21 1563 192 134 70 chr6 95325752 95325956 -87089286 + Charlie1b DNA MER1_type 258 515 -8 2357 138 24 16 chr6 95327455 95327838 -87087404 - LTR45B LTR ERV1 -101 388 3 2058 157 45 148 chr6 95327876 95328538 -87086704 - LTR8A LTR ERV1 -100 627 34 1861 148 0 0 chr6 95329471 95329735 -87085507 + AluJb SINE Alu 1 264 -48 2436 111 41 36 chr6 95329735 95330097 -87085145 - THE1B LTR MaLR 0 364 1 12370 84 17 5 chr6 95330097 95331657 -87083585 - THE1B-int LTR MaLR 0 1580 1 1997 133 62 37 chr6 95331657 95332009 -87083233 - THE1B LTR MaLR 0 364 4 232 125 0 0 chr6 95332012 95332052 -87083190 + AluJb SINE Alu 260 299 -3 467 288 129 0 chr6 95332571 95332734 -87082508 - MIR SINE MIR -13 249 66 794 254 65 24 chr6 95332790 95333038 -87082204 - MIR SINE MIR -2 260 3 21 36 0 0 chr6 95333295 95333323 -87081919 + AT_rich Low_complexity Low_complexity 1 28 0 2700 111 17 11 chr6 95333511 95333872 -87081370 - THE1B LTR MaLR -1 363 1 2455 68 0 0 chr6 95334350 95334644 -87080598 + AluY SINE Alu 6 299 -12 2015 224 56 41 chr6 95334880 95335092 -87080150 + L1ME1 LINE L1 5607 5814 -520 1483 137 4 44 chr6 95335092 95335341 -87079901 + AluJo SINE Alu 44 282 -30 2015 224 56 41 chr6 95335341 95335698 -87079544 + L1ME1 LINE L1 5814 6334 0 2189 122 3 0 chr6 95335707 95336002 -87079240 + AluSx SINE Alu 1 296 -16 406 354 48 7 chr6 95336085 95336232 -87079010 + MIR SINE MIR 33 185 -77 1843 171 48 26 chr6 95336251 95336603 -87078639 + MER47A DNA MER2_type 7 366 0 1420 197 11 18 chr6 95337367 95337672 -87077570 + AluJb SINE Alu 1 303 0 1870 124 8 0 chr6 95337674 95337939 -87077303 + AluSx SINE Alu 1 267 -45 219 188 0 0 chr6 95337943 95337991 -87077251 + GA-rich Low_complexity Low_complexity 3 50 0 523 188 10 0 chr6 95338431 95338527 -87076715 + MSTC LTR MaLR 1 97 -299 2184 124 3 0 chr6 95338527 95338826 -87076416 + AluSx SINE Alu 1 300 -12 597 134 11 78 chr6 95338830 95339015 -87076227 + MSTC LTR MaLR 203 424 -4 339 324 37 57 chr6 95339021 95339320 -87075922 + L1MC4a LINE L1 4875 5167 -979 350 261 81 11 chr6 95339409 95339675 -87075567 + L1MC4a LINE L1 5197 5471 -771 668 224 114 38 chr6 95339715 95339946 -87075296 + L1MC4a LINE L1 5574 5823 -1980 795 161 39 23 chr6 95339946 95340076 -87075166 + FLAM_C SINE Alu 1 132 -1 365 121 69 0 chr6 95340099 95340157 -87075085 + MSTB1 LTR MaLR 1 62 -395 1568 152 37 7 chr6 95340157 95340427 -87074815 + AluJb SINE Alu 1 278 -34 389 129 14 0 chr6 95340430 95340500 -87074742 + GA-rich Low_complexity Low_complexity 2 72 0 1562 172 44 86 chr6 95340502 95340910 -87074332 + MSTB1 LTR MaLR 42 432 0 1513 239 93 51 chr6 95341015 95341286 -87073956 - L2 LINE L2 0 3313 3055 2476 82 0 0 chr6 95341286 95341589 -87073653 + AluSc SINE Alu 1 303 -6 1513 239 93 51 chr6 95341589 95341896 -87073346 - L2 LINE L2 -258 3055 2763 1973 128 0 17 chr6 95341896 95342213 -87073029 - AluSx SINE Alu 0 312 1 1817 125 50 0 chr6 95342216 95342495 -87072747 - AluJb SINE Alu -19 293 1 1513 239 93 51 chr6 95342495 95342829 -87072413 - L2 LINE L2 -551 2762 2374 256 179 26 0 chr6 95342932 95343010 -87072232 + (TA)n Simple_repeat Simple_repeat 1 80 0 32 26 0 0 chr6 95343163 95343202 -87072040 + AT_rich Low_complexity Low_complexity 1 39 0 2270 87 7 0 chr6 95343340 95343627 -87071615 - AluSx SINE Alu -19 293 5 21 0 0 0 chr6 95343972 95343993 -87071249 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 95344202 95344230 -87071012 + AT_rich Low_complexity Low_complexity 1 28 0 467 269 67 0 chr6 95344429 95344548 -87070694 + MER119 DNA MER1_type 6 132 -451 553 203 0 91 chr6 95344550 95344693 -87070549 + MER119 DNA MER1_type 454 583 0 2149 126 0 0 chr6 95344718 95345020 -87070222 + AluSq SINE Alu 1 302 -11 2803 144 16 14 chr6 95345577 95346021 -87069221 - MER65A LTR ERV1 0 445 1 730 101 0 42 chr6 95347224 95347343 -87067899 + L1PA8 LINE L1 6059 6172 0 333 287 31 31 chr6 95347364 95347493 -87067749 + L1MC/D LINE L1 5601 5729 -392 24 0 0 0 chr6 95347506 95347530 -87067712 + AT_rich Low_complexity Low_complexity 1 24 0 835 199 0 0 chr6 95347833 95347979 -87067263 + FRAM SINE Alu 1 146 -30 315 0 0 0 chr6 95347983 95348018 -87067224 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2496 88 52 21 chr6 95348442 95348759 -87066483 - Tigger4(Zombi) DNA MER2_type 0 2731 2398 1924 143 34 3 chr6 95348759 95349052 -87066190 + AluSx SINE Alu 1 302 -10 2496 88 52 21 chr6 95349052 95349121 -87066121 - Tigger4(Zombi) DNA MER2_type -333 2398 2333 655 143 29 0 chr6 95349123 95349228 -87066014 - Tigger4(Zombi) DNA MER2_type -2500 231 124 236 309 10 21 chr6 95349273 95349370 -87065872 + GA-rich Low_complexity Low_complexity 2 97 0 2490 69 0 0 chr6 95349733 95350037 -87065205 - AluY SINE Alu -5 306 3 412 330 23 17 chr6 95350442 95350615 -87064627 - MIR SINE MIR 0 262 89 1709 179 16 7 chr6 95350766 95351073 -87064169 - MER58B DNA MER1_type 0 341 32 26 0 0 0 chr6 95351389 95351415 -87063827 + AT_rich Low_complexity Low_complexity 1 26 0 2427 135 28 22 chr6 95351908 95352114 -87063128 - MLT1A1 LTR MaLR 0 365 155 2267 107 0 3 chr6 95352114 95352414 -87062828 - AluSx SINE Alu -13 299 1 2427 135 28 22 chr6 95352414 95352570 -87062672 - MLT1A1 LTR MaLR -210 155 1 207 0 0 0 chr6 95353191 95353214 -87062028 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 2313 68 4 0 chr6 95353214 95353494 -87061748 - AluSp SINE Alu -32 281 1 660 220 64 12 chr6 95353559 95353732 -87061510 + MIR SINE MIR 81 262 0 673 279 15 25 chr6 95353955 95354159 -87061083 + MIR SINE MIR 40 241 -21 252 239 14 28 chr6 95355638 95355709 -87059533 + MER5A DNA MER1_type 7 76 -113 2386 97 3 3 chr6 95355709 95356018 -87059224 + AluSc SINE Alu 1 309 0 314 283 94 7 chr6 95356071 95356209 -87059033 + L1ME4a LINE L1 4022 4171 -1975 2670 185 20 21 chr6 95356217 95357141 -87058101 + L1ME4a LINE L1 4715 5638 -706 2070 146 82 0 chr6 95357141 95357483 -87057759 + L1MC1 LINE L1 5957 6327 -6 412 286 128 8 chr6 95357694 95357928 -87057314 + L1ME4a LINE L1 5621 5882 -239 403 298 95 51 chr6 95358464 95358759 -87056483 - L2 LINE L2 0 3313 3006 955 178 128 0 chr6 95358877 95359057 -87056185 + MER3 DNA MER1_type 7 209 0 613 249 86 49 chr6 95359439 95359784 -87055458 + LTR18A LTR ERVL 1 614 0 2220 121 0 6 chr6 95359855 95360169 -87055073 - AluSx SINE Alu 0 312 1 2083 128 20 0 chr6 95360370 95360666 -87054576 + AluSx SINE Alu 1 302 -10 293 255 122 10 chr6 95361277 95361375 -87053867 - L2 LINE L2 -28 3244 3136 485 245 35 7 chr6 95361378 95361521 -87053721 + L1MB5 LINE L1 5936 6082 -92 361 332 92 43 chr6 95361522 95362092 -87053150 - L2 LINE L2 -194 3078 2470 1955 155 0 13 chr6 95362643 95362953 -87052289 + AluJo SINE Alu 1 306 -6 1252 54 96 0 chr6 95362956 95363123 -87052119 - AluY SINE Alu -8 303 121 34 24 0 0 chr6 95363241 95363282 -87051960 + AT_rich Low_complexity Low_complexity 1 41 0 261 0 0 0 chr6 95363465 95363494 -87051748 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1249 181 40 40 chr6 95363494 95363770 -87051472 - AluJo SINE Alu -32 280 5 365 106 0 0 chr6 95363853 95363900 -87051342 - Alu SINE Alu -254 48 2 355 391 17 6 chr6 95364107 95364281 -87050961 - MIR3 SINE MIR -17 191 16 21 36 0 0 chr6 95364819 95364847 -87050395 + AT_rich Low_complexity Low_complexity 1 28 0 2263 95 0 7 chr6 95364998 95365304 -87049938 - AluY SINE Alu -7 304 1 2131 95 24 3 chr6 95366076 95366370 -87048872 - AluY SINE Alu -11 300 1 1941 135 7 0 chr6 95366552 95366834 -87048408 - AluSq SINE Alu -29 284 1 222 37 0 0 chr6 95367275 95367302 -87047940 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1956 125 0 0 chr6 95367304 95367585 -87047657 - AluSx SINE Alu -31 281 1 2278 103 3 0 chr6 95367613 95367914 -87047328 - AluSp SINE Alu -11 302 1 28 48 0 0 chr6 95368137 95368179 -87047063 + AT_rich Low_complexity Low_complexity 1 42 0 343 272 3 10 chr6 95368590 95368733 -87046509 + FRAM SINE Alu 13 140 -26 2038 42 0 0 chr6 95421202 95421438 -86993804 - AluY SINE Alu -75 236 1 246 225 22 22 chr6 95422136 95422225 -86993017 + L1MC4 LINE L1 6614 6702 -1340 301 320 0 10 chr6 95422236 95422333 -86992909 - L1MC4 LINE L1 -1339 6703 6608 404 313 41 20 chr6 95422611 95422758 -86992484 + MIR SINE MIR 63 212 -50 2233 118 3 0 chr6 95422854 95423159 -86992083 + AluSx SINE Alu 1 306 -6 492 327 15 56 chr6 95423203 95423469 -86991773 + L2 LINE L2 1084 1338 -1976 455 200 0 11 chr6 95423483 95423578 -86991664 + L1MEc LINE L1 39 132 -6264 601 316 92 41 chr6 95423579 95424165 -86991077 + L1MEc LINE L1 202 817 -5579 2284 90 0 10 chr6 95424171 95424482 -86990760 - AluSq SINE Alu -5 308 1 391 310 63 14 chr6 95425070 95425212 -86990030 - MIR SINE MIR -8 254 106 335 257 50 30 chr6 95425237 95425338 -86989904 - MLT1H LTR MaLR -16 533 431 685 257 114 9 chr6 95425438 95425648 -86989594 - MLT1H LTR MaLR -292 257 26 1175 260 67 28 chr6 95425703 95426091 -86989151 - MLT1J LTR MaLR 0 511 109 251 272 68 37 chr6 95426301 95426463 -86988779 - L1ME4a LINE L1 -21 6100 5934 229 208 50 30 chr6 95426516 95426617 -86988625 - L1ME4a LINE L1 0 6121 6019 280 266 25 0 chr6 95428394 95428473 -86986769 - MIR SINE MIR -148 114 34 2267 60 49 0 chr6 95428867 95429152 -86986090 - AluSp SINE Alu -14 299 1 21 0 0 0 chr6 95429161 95429182 -86986060 + AT_rich Low_complexity Low_complexity 1 21 0 2541 170 44 4 chr6 95430900 95431497 -86983745 - L1P LINE L1 -727 5429 4809 491 121 48 0 chr6 95431497 95431580 -86983662 + L1PB4 LINE L1 5434 5520 -636 203 0 0 36 chr6 95432274 95432302 -86982940 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 2052 114 3 7 chr6 95432305 95432594 -86982648 - AluSx SINE Alu -19 293 6 2640 117 38 12 chr6 95432840 95433266 -86981976 + L1PB4 LINE L1 5720 6156 0 1865 154 0 10 chr6 95433946 95434239 -86981003 - AluSx SINE Alu -22 290 1 22 56 0 0 chr6 95434532 95434568 -86980674 + AT_rich Low_complexity Low_complexity 1 36 0 292 206 14 50 chr6 95434862 95435003 -86980239 + (TA)n Simple_repeat Simple_repeat 2 137 0 21 0 0 0 chr6 95437193 95437214 -86978028 + AT_rich Low_complexity Low_complexity 1 21 0 2176 70 56 7 chr6 95437392 95437677 -86977565 - AluSc SINE Alu -10 299 1 1645 168 31 21 chr6 95438469 95438755 -86976487 + AluJb SINE Alu 1 289 -23 781 167 0 36 chr6 95438767 95438905 -86976337 - FLAM_C SINE Alu 0 133 1 1433 208 26 0 chr6 95439468 95439737 -86975505 + AluJo SINE Alu 28 303 -9 655 298 0 0 chr6 95440084 95440245 -86974997 + MIR SINE MIR 3 163 -99 216 0 0 0 chr6 95440551 95440575 -86974667 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2437 84 0 0 chr6 95440843 95441141 -86974101 + AluSx SINE Alu 1 298 -14 231 91 0 0 chr6 95441578 95441611 -86973631 - L1MB1 LINE L1 -196 5972 5940 2372 92 0 3 chr6 95441806 95442109 -86973133 + AluSq SINE Alu 1 302 -11 2311 100 0 3 chr6 95442109 95442420 -86972822 + AluSg SINE Alu 1 310 0 2079 110 20 7 chr6 95442566 95442858 -86972384 - AluSx SINE Alu -16 296 1 2528 55 0 3 chr6 95442876 95443188 -86972054 - AluY SINE Alu 0 311 1 432 306 30 15 chr6 95443718 95443852 -86971390 + MIR SINE MIR 2 137 -125 2277 88 3 3 chr6 95443920 95444216 -86971026 - AluSc SINE Alu -13 296 1 355 241 103 9 chr6 95445963 95446079 -86969163 - L2 LINE L2 0 3313 3187 26 30 0 0 chr6 95446357 95446390 -86968852 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr6 95446771 95446794 -86968448 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2297 67 0 7 chr6 95446796 95447078 -86968164 - AluY SINE Alu -31 280 1 24 67 0 0 chr6 95447382 95447427 -86967815 + AT_rich Low_complexity Low_complexity 1 45 0 470 198 69 17 chr6 95447506 95447622 -86967620 - L1M1 LINE L1 -7429 136 15 2394 88 0 0 chr6 95447622 95447927 -86967315 - AluSq SINE Alu -8 305 1 2115 97 52 3 chr6 95448598 95448887 -86966355 + AluSx SINE Alu 1 303 -9 2078 131 10 0 chr6 95451123 95451421 -86963821 + AluSx SINE Alu 1 301 -11 269 167 0 17 chr6 95452076 95452136 -86963106 + CT-rich Low_complexity Low_complexity 4 62 0 327 252 106 33 chr6 95452208 95452359 -86962883 + MIR3 SINE MIR 20 181 -27 652 265 301 26 chr6 95452625 95453014 -86962228 + L2 LINE L2 2817 3312 -1 21 57 0 0 chr6 95453371 95453406 -86961836 + AT_rich Low_complexity Low_complexity 1 35 0 2280 113 0 0 chr6 95453457 95453749 -86961493 + AluSx SINE Alu 1 292 -20 1534 166 19 73 chr6 95453759 95454073 -86961169 + AluJb SINE Alu 1 297 -15 2287 113 7 0 chr6 95454127 95454437 -86960805 - AluSx SINE Alu 0 312 1 341 309 32 16 chr6 95455125 95455248 -86959994 - L2 LINE L2 0 3313 3189 1843 161 0 20 chr6 95455300 95455605 -86959637 - AluJo SINE Alu -13 299 1 2276 115 7 0 chr6 95455719 95456023 -86959219 - AluSx SINE Alu -4 308 3 2251 105 0 0 chr6 95456613 95456907 -86958335 - AluSg1 SINE Alu -15 294 1 811 300 99 30 chr6 95456941 95457284 -86957958 - L1M4 LINE L1 -743 5403 5085 1549 177 0 83 chr6 95457284 95457623 -86957619 - AluJo SINE Alu -1 311 1 811 300 99 30 chr6 95457623 95457642 -86957600 - L1M4 LINE L1 -1061 5085 5069 1944 149 58 67 chr6 95457642 95457822 -86957420 - MER65A LTR ERV1 0 445 265 2271 101 0 3 chr6 95457822 95458119 -86957123 + AluSc SINE Alu 3 298 -11 1944 149 58 67 chr6 95458119 95458387 -86956855 - MER65A LTR ERV1 -180 265 1 811 300 99 30 chr6 95458387 95458852 -86956390 - L1M4 LINE L1 -1077 5069 4518 1271 271 129 26 chr6 95459019 95459991 -86955251 - L1M4 LINE L1 -816 5330 4259 1496 280 78 49 chr6 95462119 95463269 -86951973 - L1M4 LINE L1 -1986 4160 2970 2113 115 13 0 chr6 95463269 95463581 -86951661 - L1PA16 LINE L1 -12 6154 5839 1496 280 78 49 chr6 95463581 95463676 -86951566 - L1M4 LINE L1 -3176 2970 2879 31 0 0 0 chr6 95464815 95464846 -86950396 + AT_rich Low_complexity Low_complexity 1 31 0 11736 117 18 4 chr6 95464854 95467596 -86947646 - L1PA10 LINE L1 -15 6153 3370 1891 94 0 0 chr6 95467603 95467858 -86947384 - L1PA7 LINE L1 -8 6146 5892 606 158 10 0 chr6 95467858 95467959 -86947283 - FRAM SINE Alu -75 101 1 5730 118 27 30 chr6 95468009 95468794 -86946448 - L1MA4 LINE L1 -6 6294 5508 2592 65 0 3 chr6 95468794 95469101 -86946141 + AluY SINE Alu 1 306 -5 5730 118 27 30 chr6 95469101 95470063 -86945179 - L1MA4 LINE L1 -792 5508 4547 351 0 0 0 chr6 95470115 95470154 -86945088 + (TG)n Simple_repeat Simple_repeat 2 40 0 14904 146 26 32 chr6 95470258 95471440 -86943802 + L1MA3 LINE L1 15 1202 -6522 724 44 0 0 chr6 95471440 95471530 -86943712 + AluY SINE Alu 211 300 -11 14904 146 26 32 chr6 95471530 95474204 -86941038 + L1MA3 LINE L1 1202 3890 -3834 2157 96 7 7 chr6 95474204 95474520 -86940722 + AluSg SINE Alu 1 316 0 14904 146 26 32 chr6 95474520 95474553 -86940689 + L1MA3 LINE L1 3890 3922 -3802 2135 124 13 0 chr6 95474553 95474859 -86940383 - AluSx SINE Alu 0 312 3 14904 146 26 32 chr6 95474859 95476514 -86938728 + L1MA3 LINE L1 3922 5585 -2139 2346 90 0 3 chr6 95476514 95476815 -86938427 + AluY SINE Alu 8 307 -4 14904 146 26 32 chr6 95476815 95478606 -86936636 + L1MA3 LINE L1 5585 7724 0 1746 164 35 40 chr6 95479068 95479496 -86935746 - LTR37A LTR ERV1 0 426 1 1661 143 0 4 chr6 95480165 95480437 -86934805 + L1PA16 LINE L1 5892 6162 -4 27 0 0 0 chr6 95480876 95480903 -86934339 + AT_rich Low_complexity Low_complexity 1 27 0 1711 184 37 26 chr6 95481419 95481800 -86933442 - MER89 LTR ERV1 0 559 175 387 141 0 28 chr6 95481802 95481873 -86933369 - MER89 LTR ERV1 -485 74 6 1655 165 76 61 chr6 95482518 95482978 -86932264 - MER110A LTR ERV1 -1 467 1 2030 152 10 13 chr6 95484347 95484656 -86930586 - AluJb SINE Alu 0 312 5 282 224 10 61 chr6 95484671 95484769 -86930473 + Charlie8 DNA MER1_type 103 195 -2222 2410 90 0 0 chr6 95485119 95485420 -86929822 - AluSx SINE Alu -11 301 1 2305 106 0 0 chr6 95486462 95486764 -86928478 - AluSx SINE Alu -10 302 1 529 212 103 27 chr6 95487837 95487983 -86927259 + MIR SINE MIR 57 213 -49 186 277 21 0 chr6 95488096 95488143 -86927099 + MIR SINE MIR 206 253 -9 1811 141 4 4 chr6 95488526 95488795 -86926447 + AluSg SINE Alu 39 307 -3 2234 180 140 25 chr6 95489422 95489933 -86925309 + LTR65 LTR ERV1 8 598 -71 1917 166 109 3 chr6 95489933 95490132 -86925110 - MSTB LTR MaLR 0 426 250 213 39 0 0 chr6 95490132 95490158 -86925084 + (GA)n Simple_repeat Simple_repeat 1 26 0 1917 166 109 3 chr6 95490158 95490343 -86924899 - MSTB LTR MaLR -176 250 1 2234 180 140 25 chr6 95490343 95490425 -86924817 + LTR65 LTR ERV1 598 669 0 357 82 0 0 chr6 95490593 95490642 -86924600 + (TG)n Simple_repeat Simple_repeat 2 50 0 699 162 0 71 chr6 95490760 95490914 -86924328 + FLAM_C SINE Alu 1 143 0 31 0 0 0 chr6 95491095 95491126 -86924116 + AT_rich Low_complexity Low_complexity 1 31 0 2260 79 20 3 chr6 95491701 95491993 -86923249 - AluSx SINE Alu -15 297 1 306 285 71 123 chr6 95492502 95492997 -86922245 - L1M2 LINE L1 -5914 935 467 879 197 169 20 chr6 95494706 95494960 -86920282 - MER58B DNA MER1_type -8 333 42 365 108 31 15 chr6 95495495 95495560 -86919682 + MER58B DNA MER1_type 276 341 0 2141 94 0 37 chr6 95496082 95496379 -86918863 + AluSx SINE Alu 1 286 -26 1928 119 29 4 chr6 95496388 95496666 -86918576 + AluSx SINE Alu 6 290 -22 225 0 0 0 chr6 95496806 95496831 -86918411 + (TG)n Simple_repeat Simple_repeat 1 25 0 1061 147 147 0 chr6 95497281 95497472 -86917770 + MER20 DNA MER1_type 1 219 0 272 259 0 0 chr6 95497481 95497535 -86917707 + MER58 DNA MER1_type 2 55 -331 343 177 16 0 chr6 95497536 95497598 -86917644 + MER58 DNA MER1_type 2342 2404 -16 489 255 154 27 chr6 95497628 95497816 -86917426 - MIR SINE MIR 0 262 51 1554 162 276 25 chr6 95498388 95498826 -86916416 - LTR10A LTR ERV1 -61 548 1 5568 236 16 26 chr6 95498830 95500335 -86914907 - LTR10A-int LTR ERV1 -4 6645 5156 7097 102 25 31 chr6 95500389 95500773 -86914469 - Harlequin LTR ERV1 -3887 3009 2624 2450 63 3 7 chr6 95500773 95501074 -86914168 + AluSp SINE Alu 1 300 -13 7097 102 25 31 chr6 95501074 95501895 -86913347 - Harlequin LTR ERV1 -4272 2624 1812 334 207 171 0 chr6 95501900 95501982 -86913260 + LTR8 LTR ERV1 158 253 -438 912 76 0 0 chr6 95501984 95502116 -86913126 - LTR10A-int LTR ERV1 -5176 1720 1589 * 5136 92 45 20 chr6 95502095 95502941 -86912301 - LTR10A-int LTR ERV1 -5892 1004 723 255 158 116 95 chr6 95502948 95503043 -86912199 - LTR10A-int LTR ERV1 -5578 1071 975 * 295 243 78 19 chr6 95503035 95503138 -86912104 - LTR10A-int LTR ERV1 -6039 610 502 873 237 82 105 chr6 95503223 95503958 -86911284 - LTR10A-int LTR ERV1 -5931 718 1 1748 177 77 77 chr6 95503963 95504511 -86910731 - LTR10A LTR ERV1 -61 548 1 1906 156 20 0 chr6 95505122 95505417 -86909825 + AluJb SINE Alu 1 301 -11 525 294 130 60 chr6 95506070 95506534 -86908708 - L2 LINE L2 0 3313 2725 2403 105 3 0 chr6 95506534 95506838 -86908404 + AluSx SINE Alu 1 305 -7 525 294 130 60 chr6 95506838 95507043 -86908199 - L2 LINE L2 -588 2725 2536 2472 201 49 9 chr6 95507047 95507599 -86907643 + MER82 DNA MER2_type 79 652 -1 672 294 78 50 chr6 95507602 95507922 -86907320 - L2 LINE L2 -822 2492 2164 654 124 9 19 chr6 95508084 95508189 -86907053 + U6 snRNA snRNA 1 104 -3 2367 152 55 2 chr6 95508813 95509175 -86906067 + MSTB2 LTR MaLR 1 391 -66 2207 99 38 3 chr6 95509175 95509468 -86905774 - AluSg SINE Alu -7 303 1 2367 152 55 2 chr6 95509468 95509539 -86905703 + MSTB2 LTR MaLR 391 457 0 1928 163 0 0 chr6 95509588 95509877 -86905365 + AluJb SINE Alu 3 291 -21 1945 116 0 0 chr6 95509975 95510233 -86905009 - AluSg SINE Alu -14 296 39 1341 177 0 8 chr6 95510726 95510963 -86904279 - MER46A DNA MER2_type 0 236 2 254 293 59 1 chr6 95510983 95511099 -86904143 - MIR SINE MIR -60 148 37 1373 188 77 24 chr6 95511271 95511611 -86903631 - MLT1A2 LTR MaLR -16 358 1 3436 210 111 33 chr6 95511634 95512185 -86903057 - L1MC4 LINE L1 -107 7935 7428 2239 115 0 7 chr6 95512185 95512489 -86902753 - AluSq SINE Alu -11 302 1 3436 210 111 33 chr6 95512489 95513102 -86902140 - L1MC4 LINE L1 -614 7428 6864 189 0 0 0 chr6 95513102 95513123 -86902119 + (TG)n Simple_repeat Simple_repeat 2 22 0 3436 210 111 33 chr6 95513123 95513517 -86901725 - L1MC4 LINE L1 -1178 6864 6166 659 222 50 46 chr6 95513691 95513930 -86901312 - L1MC4 LINE L1 -1903 5905 5666 2339 83 0 10 chr6 95514062 95514364 -86900878 - AluY SINE Alu -12 299 1 1706 162 40 4 chr6 95514616 95514894 -86900348 - AluJb SINE Alu -19 293 6 2435 80 0 0 chr6 95515293 95515594 -86899648 - AluY SINE Alu -10 301 1 22 35 0 0 chr6 95516055 95516084 -86899158 + AT_rich Low_complexity Low_complexity 1 29 0 2231 102 10 10 chr6 95516137 95516440 -86898802 + AluSx SINE Alu 1 303 -9 1478 195 7 17 chr6 95517366 95517663 -86897579 - AluJo SINE Alu -14 298 5 2081 119 13 0 chr6 95518131 95518434 -86896808 + AluSx SINE Alu 1 307 -5 1978 110 55 7 chr6 95519473 95519764 -86895478 + AluSx SINE Alu 1 305 -7 2212 90 0 17 chr6 95520389 95520689 -86894553 - AluSc SINE Alu -14 295 1 378 264 100 36 chr6 95521142 95521282 -86893960 - MIR3 SINE MIR -7 201 53 193 274 106 133 chr6 95521725 95521980 -86893262 - L3 LINE CR1 -322 1255 1008 1736 161 56 38 chr6 95521995 95522337 -86892905 - MER7A DNA MER2_type 0 346 1 335 332 164 13 chr6 95522567 95522799 -86892443 - L3 LINE CR1 -732 845 579 987 186 68 0 chr6 95522828 95523005 -86892237 - MLT1F LTR MaLR -72 470 282 316 327 143 50 chr6 95523005 95523125 -86892117 - L3 LINE CR1 -990 587 480 1725 93 0 4 chr6 95523125 95523376 -86891866 + AluSg SINE Alu 56 305 0 316 327 143 50 chr6 95523376 95523575 -86891667 - L3 LINE CR1 -1097 480 237 1316 159 108 9 chr6 95523695 95523927 -86891315 + AluJo SINE Alu 50 304 -8 1067 173 22 0 chr6 95524579 95524764 -86890478 - MER5A DNA MER1_type 0 189 1 1656 183 83 19 chr6 95525153 95525525 -86889717 - MSTD LTR MaLR 0 396 1 457 264 182 0 chr6 95529685 95529833 -86885409 + MIR SINE MIR 55 229 -33 2040 106 41 0 chr6 95530241 95530533 -86884709 + AluSp SINE Alu 2 305 -8 32 43 0 0 chr6 95530700 95530746 -86884496 + AT_rich Low_complexity Low_complexity 1 46 0 233 172 78 47 chr6 95532077 95532141 -86883101 - LTR67 LTR ERVL -2 555 490 243 0 0 0 chr6 95532917 95532944 -86882298 + (TA)n Simple_repeat Simple_repeat 1 27 0 2324 80 3 3 chr6 95532944 95533243 -86881999 - AluY SINE Alu -12 299 1 2329 97 3 0 chr6 95533669 95533969 -86881273 + AluSp SINE Alu 1 301 -12 2488 48 3 0 chr6 95534880 95535172 -86880070 + AluY SINE Alu 2 294 -17 1208 96 48 0 chr6 95535447 95535614 -86879628 + AluSg/x SINE Alu 133 307 -5 2151 119 0 3 chr6 95536636 95536929 -86878313 + AluSg SINE Alu 1 292 -18 198 213 234 21 chr6 95538025 95538119 -86877123 + MIR SINE MIR 139 252 -10 374 305 30 30 chr6 95538755 95538886 -86876356 + L1MC4 LINE L1 6584 6714 -1328 1761 179 156 21 chr6 95540284 95540787 -86874455 + L1MC4a LINE L1 5789 7806 -2 221 274 0 28 chr6 95541352 95541458 -86873784 + A-rich Low_complexity Low_complexity 2 104 0 2326 88 0 10 chr6 95541688 95541995 -86873247 + AluSg SINE Alu 1 304 -6 21 0 0 0 chr6 95542123 95542144 -86873098 + AT_rich Low_complexity Low_complexity 1 21 0 914 143 0 0 chr6 95542289 95542422 -86872820 - AluSq/x SINE Alu -171 141 9 699 202 8 0 chr6 95542425 95542549 -86872693 - AluJo/FLAM SINE Alu -177 125 1 503 234 52 7 chr6 95542559 95542713 -86872529 + MER106B DNA MER1_type 896 1056 -3 314 290 47 0 chr6 95542867 95542974 -86872268 - MIR3 SINE MIR -16 192 81 5304 140 46 76 chr6 95544955 95545181 -86870061 + L1MA7 LINE L1 4138 4369 -1922 2313 82 10 10 chr6 95545181 95545485 -86869757 - AluSx SINE Alu -8 304 1 5304 140 46 76 chr6 95545485 95545873 -86869369 + L1MA7 LINE L1 4369 4767 -1524 1926 155 3 3 chr6 95545873 95546170 -86869072 + AluSx SINE Alu 1 297 -15 5304 140 46 76 chr6 95546170 95546312 -86868930 + L1MA7 LINE L1 4767 4912 -1379 2414 87 0 0 chr6 95546312 95546610 -86868632 - AluSp SINE Alu -15 298 1 5304 140 46 76 chr6 95546610 95546668 -86868574 + L1MA7 LINE L1 4912 4970 -1321 2173 125 0 0 chr6 95546668 95546965 -86868277 + AluSc SINE Alu 1 297 -12 5304 140 46 76 chr6 95546965 95547419 -86867823 + L1MA7 LINE L1 4970 5436 -855 1916 124 23 0 chr6 95547419 95547718 -86867524 + L1PA10 LINE L1 5860 6165 -3 5304 140 46 76 chr6 95547718 95548645 -86866597 + L1MA7 LINE L1 5436 6285 -6 233 357 0 0 chr6 95548891 95548961 -86866281 + MIR SINE MIR 60 129 -79 317 289 111 39 chr6 95549395 95549413 -86865829 + L2 LINE L2 2704 2719 -595 805 136 0 57 chr6 95549413 95549553 -86865689 + FLAM_C SINE Alu 1 132 -1 317 289 111 39 chr6 95549553 95549615 -86865627 + L2 LINE L2 2719 2775 -539 591 258 82 10 chr6 95549615 95549809 -86865433 - MER3 DNA MER1_type 0 209 2 317 289 111 39 chr6 95549809 95549907 -86865335 + L2 LINE L2 2775 2896 -418 238 250 39 58 chr6 95549991 95550095 -86865147 + L2 LINE L2 3149 3250 -63 651 130 136 19 chr6 95550714 95550868 -86864374 - Charlie4 DNA MER1_type -10 1951 1780 186 356 0 0 chr6 95551036 95551095 -86864147 + L3b LINE CR1 1183 1241 -342 22 70 0 0 chr6 95551409 95551452 -86863790 + AT_rich Low_complexity Low_complexity 1 43 0 2737 194 33 22 chr6 95551869 95552420 -86862822 + MER68 LTR ERV1 6 562 0 21 0 0 0 chr6 95555075 95555096 -86860146 + AT_rich Low_complexity Low_complexity 1 21 0 2031 137 0 26 chr6 95555311 95555624 -86859618 - AluSx SINE Alu -7 305 1 2325 101 0 7 chr6 95555996 95556304 -86858938 + AluSg SINE Alu 3 308 -2 22 35 0 0 chr6 95556394 95556423 -86858819 + AT_rich Low_complexity Low_complexity 1 29 0 188 200 89 0 chr6 95557003 95557048 -86858194 + MIR SINE MIR 21 69 -193 752 178 0 44 chr6 95558254 95558389 -86856853 + AluJo/FLAM SINE Alu 1 129 -173 1799 184 0 0 chr6 95558391 95558723 -86856519 + AluJb SINE Alu 1 332 0 4588 65 5 3 chr6 95558898 95559480 -86855762 + LTR10C LTR ERV1 1 583 -8 2023 116 20 16 chr6 95559807 95560110 -86855132 + AluSg SINE Alu 1 304 -6 1751 176 7 3 chr6 95560820 95561115 -86854127 - AluJo SINE Alu -16 296 1 2294 110 0 0 chr6 95561181 95561481 -86853761 + AluSx SINE Alu 1 300 -12 186 43 0 0 chr6 95562289 95562312 -86852930 + (A)n Simple_repeat Simple_repeat 1 23 0 2267 97 3 0 chr6 95663240 95663529 -86751713 - AluSq SINE Alu -23 290 1 1835 137 31 7 chr6 95663901 95664193 -86751049 + AluJb SINE Alu 1 299 -13 2300 96 7 0 chr6 95664488 95664789 -86750453 - AluSp SINE Alu -10 303 1 1819 154 44 3 chr6 95665155 95665448 -86749794 + AluSx SINE Alu 1 305 -7 2169 110 0 7 chr6 95665448 95665749 -86749493 + AluSq SINE Alu 1 299 -14 350 288 19 79 chr6 95665873 95666043 -86749199 - MIR SINE MIR -62 146 26 773 243 89 5 chr6 95667210 95667424 -86747818 + L1MC4 LINE L1 6460 6691 -1351 2425 159 50 63 chr6 95667424 95667614 -86747628 + MLT1D LTR MaLR 1 192 -313 2005 154 0 3 chr6 95667614 95667919 -86747323 + AluJb SINE Alu 1 304 -8 2425 159 50 63 chr6 95667919 95668207 -86747035 + MLT1D LTR MaLR 192 473 -32 3554 211 103 55 chr6 95668217 95668406 -86746836 + L1MC4 LINE L1 6699 6877 -1165 2336 94 10 0 chr6 95668406 95668715 -86746527 - AluSp SINE Alu -1 312 1 3554 211 103 55 chr6 95668715 95669074 -86746168 + L1MC4 LINE L1 6877 7217 -825 1918 142 34 3 chr6 95669074 95669370 -86745872 + AluJb SINE Alu 1 305 -7 3554 211 103 55 chr6 95669370 95669974 -86745268 + L1MC4 LINE L1 7217 7908 -134 2090 114 35 0 chr6 95670299 95670588 -86744654 - AluSx SINE Alu -9 303 5 7084 53 16 66 chr6 95670927 95672672 -86742570 + SVA Other Other 3 1386 0 374 300 50 68 chr6 95672787 95672853 -86742389 + L1MC4 LINE L1 7689 7755 -287 2158 93 31 0 chr6 95672853 95673144 -86742098 - AluSp SINE Alu -13 300 1 374 300 50 68 chr6 95673144 95673400 -86741842 + L1MC4 LINE L1 7755 8005 -37 198 0 0 0 chr6 95673486 95673508 -86741734 + (T)n Simple_repeat Simple_repeat 1 22 0 1413 48 0 6 chr6 95673611 95673778 -86741464 + AluY SINE Alu 120 285 -26 1571 115 0 0 chr6 95673786 95673995 -86741247 - AluSx SINE Alu -103 209 1 2379 97 0 3 chr6 95674121 95674431 -86740811 - AluSc SINE Alu 0 309 1 523 125 68 11 chr6 95674431 95674513 -86740729 - AluSg/x SINE Alu -17 295 209 1918 130 47 7 chr6 95674519 95674819 -86740423 - AluSx SINE Alu 0 312 1 286 354 147 15 chr6 95675136 95675334 -86739908 + L2 LINE L2 3049 3272 0 28 0 0 0 chr6 95675739 95675767 -86739475 + AT_rich Low_complexity Low_complexity 1 28 0 2129 131 0 0 chr6 95675767 95676049 -86739193 - AluSx SINE Alu -30 282 1 402 288 141 5 chr6 95676087 95676278 -86738964 - MIR SINE MIR -32 230 14 279 297 39 8 chr6 95676349 95676477 -86738765 - MIR3 SINE MIR -47 161 30 480 117 0 0 chr6 95676638 95676715 -86738527 + (GGA)n Simple_repeat Simple_repeat 3 79 0 1905 173 3 0 chr6 95677472 95677773 -86737469 + AluJb SINE Alu 1 302 -10 2391 98 0 3 chr6 95678024 95678329 -86736913 + AluSg SINE Alu 1 304 -6 2196 127 0 9 chr6 95678341 95678656 -86736586 + AluSx SINE Alu 1 312 0 2345 103 7 0 chr6 95678670 95679013 -86736229 + AluSp SINE Alu 1 345 0 233 297 0 59 chr6 95680232 95680311 -86734931 - L2 LINE L2 -189 3083 3010 2857 164 59 48 chr6 95680311 95680413 -86734829 + MLT1F1 LTR MaLR 1 100 -467 1456 109 0 0 chr6 95680413 95680597 -86734645 - AluSq SINE Alu -127 186 3 2857 164 59 48 chr6 95680597 95681054 -86734188 + MLT1F1 LTR MaLR 100 566 -1 233 297 0 59 chr6 95681054 95681075 -86734167 - L2 LINE L2 -262 3010 2989 813 181 0 0 chr6 95681243 95681376 -86733866 + FLAM_C SINE Alu 1 133 0 391 349 122 21 chr6 95681453 95681889 -86733353 + L2 LINE L2 2823 3302 -11 2300 93 7 0 chr6 95682053 95682344 -86732898 + AluSx SINE Alu 1 293 -19 235 217 17 17 chr6 95682433 95682493 -86732749 + (TA)n Simple_repeat Simple_repeat 2 61 0 441 216 45 0 chr6 95682493 95682604 -86732638 - L1MC4a LINE L1 -464 7344 7229 337 278 6 41 chr6 95682648 95682817 -86732425 - L1MC5 LINE L1 -194 7767 7605 2358 104 7 0 chr6 95682975 95683282 -86731960 + AluSc SINE Alu 1 309 0 2146 127 0 0 chr6 95683404 95683703 -86731539 + AluSx SINE Alu 14 312 0 2404 97 3 0 chr6 95684384 95684695 -86730547 - AluSx SINE Alu 0 312 1 278 253 222 0 chr6 95685985 95686084 -86729158 + MIR SINE MIR 28 148 -114 242 140 0 20 chr6 95686090 95686140 -86729102 + (CCCCCT)n Simple_repeat Simple_repeat 2 50 0 10430 38 8 102 chr6 95686246 95687704 -86727538 + SVA Other Other 67 1386 0 1843 149 3 33 chr6 95687950 95688092 -86727150 + AluJb SINE Alu 1 146 -166 2310 88 0 7 chr6 95688092 95688397 -86726845 + AluSg SINE Alu 7 310 0 1843 149 3 33 chr6 95688397 95688556 -86726686 + AluJb SINE Alu 146 293 -19 357 119 179 0 chr6 95688600 95688667 -86726575 - LTR16A LTR ERVL -49 401 323 306 271 104 0 chr6 95688669 95688765 -86726477 + MER81 DNA DNA 8 113 -1 548 255 43 0 chr6 95688855 95688996 -86726246 + MIR SINE MIR 112 258 -4 2348 110 0 0 chr6 95689318 95689626 -86725616 - AluSx SINE Alu -4 308 1 1775 159 0 73 chr6 95689629 95689956 -86725286 - AluJo SINE Alu -9 303 1 2359 89 7 0 chr6 95689958 95690261 -86724981 - AluSp SINE Alu -8 305 1 1687 175 7 13 chr6 95691233 95691542 -86723700 + AluJo SINE Alu 1 307 -5 1914 136 0 32 chr6 95691561 95691895 -86723347 + AluJb SINE Alu 11 334 0 273 29 0 0 chr6 95693631 95693665 -86721577 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2290 59 3 24 chr6 95694510 95694975 -86720267 + AluY SINE Alu 1 459 0 2281 93 3 23 chr6 95695417 95695719 -86719523 + AluSq SINE Alu 1 296 -17 2111 127 7 0 chr6 95695777 95696069 -86719173 - AluSg SINE Alu -16 294 1 2187 108 3 10 chr6 95696088 95696385 -86718857 - AluSx SINE Alu -17 295 1 2234 111 0 0 chr6 95696451 95696749 -86718493 + AluSx SINE Alu 1 298 -14 1122 286 79 40 chr6 95696749 95696804 -86718438 - LTR67 LTR ERVL -12 545 494 2245 123 0 3 chr6 95696804 95697114 -86718128 + AluSx SINE Alu 3 311 -1 1122 286 79 40 chr6 95697114 95697579 -86717663 - LTR67 LTR ERVL -63 494 5 2376 72 7 23 chr6 95698231 95698535 -86716707 + AluSp SINE Alu 1 299 -14 288 341 28 6 chr6 95698602 95698778 -86716464 - L1ME4a LINE L1 -219 5902 5723 2035 115 19 32 chr6 95700737 95701051 -86714191 + AluSg SINE Alu 1 310 0 22 35 0 0 chr6 95701216 95701245 -86713997 + AT_rich Low_complexity Low_complexity 1 29 0 1596 168 38 28 chr6 95701361 95701652 -86713590 + AluJo SINE Alu 1 294 -18 716 254 102 109 chr6 95701894 95702028 -86713214 - L1ME4a LINE L1 0 6121 5988 629 173 0 0 chr6 95702028 95702132 -86713110 - U13 snRNA snRNA 0 104 1 716 254 102 109 chr6 95702132 95702160 -86713082 - L1ME4a LINE L1 -133 5988 5961 312 27 0 0 chr6 95702160 95702197 -86713045 + (CA)n Simple_repeat Simple_repeat 2 38 0 716 254 102 109 chr6 95702197 95702321 -86712921 - L1ME4a LINE L1 -160 5961 5838 2092 152 0 0 chr6 95702321 95702618 -86712624 - AluSx SINE Alu -15 297 1 716 254 102 109 chr6 95702618 95703129 -86712113 - L1ME4a LINE L1 -283 5838 5325 487 227 157 5 chr6 95703797 95703982 -86711260 - MIR SINE MIR -14 248 36 727 191 11 71 chr6 95704403 95704479 -86710763 - MIR SINE MIR -46 216 137 1496 191 0 32 chr6 95704479 95704761 -86710481 + AluJo SINE Alu 38 310 -2 727 191 11 71 chr6 95704761 95704867 -86710375 - MIR SINE MIR -125 137 45 267 199 29 15 chr6 95705001 95705077 -86710165 - Charlie8 DNA MER1_type -1001 1416 1349 22 0 0 0 chr6 95706026 95706048 -86709194 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 95706088 95706111 -86709131 + AT_rich Low_complexity Low_complexity 1 23 0 675 160 0 0 chr6 95706111 95706242 -86709000 - L1MA7 LINE L1 -6 6285 6155 1852 182 38 59 chr6 95706249 95706279 -86708963 - Charlie1b DNA MER1_type -2246 515 486 2405 100 3 0 chr6 95706279 95706590 -86708652 - AluSp SINE Alu -1 312 1 2263 109 3 0 chr6 95706590 95706893 -86708349 - AluSq SINE Alu -9 304 1 1607 203 4 0 chr6 95706901 95707209 -86708033 - AluJb SINE Alu 0 309 1 1852 182 38 59 chr6 95707209 95707644 -86707598 - Charlie1b DNA MER1_type -2281 480 49 457 305 60 6 chr6 95707759 95707926 -86707316 + MIR SINE MIR 15 190 -72 1119 224 204 10 chr6 95707927 95708325 -86706917 + MER113 DNA MER1_type? 2 476 -45 192 236 18 0 chr6 95708369 95708424 -86706818 + MIR SINE MIR 187 242 -20 831 188 164 5 chr6 95708548 95708761 -86706481 + MIR SINE MIR 14 260 -2 387 174 194 0 chr6 95708834 95708989 -86706253 - MER5C DNA MER1_type -6 318 134 1065 187 93 55 chr6 95709015 95709304 -86705938 + AluJo SINE Alu 1 300 -2 268 98 0 0 chr6 95709518 95709559 -86705683 + MADE1 DNA Mariner 40 80 0 2191 142 0 0 chr6 95709680 95709989 -86705253 - AluSx SINE Alu -3 309 1 2320 103 0 3 chr6 95710061 95710363 -86704879 - AluSx SINE Alu -5 307 7 249 247 41 14 chr6 95710737 95710810 -86704432 + MER5A DNA MER1_type 115 189 0 265 83 0 0 chr6 95711110 95711146 -86704096 - MADE1 DNA Mariner 0 80 45 302 289 144 12 chr6 95711244 95711417 -86703825 + L2 LINE L2 3068 3263 -9 2476 90 3 0 chr6 95713132 95713442 -86701800 - AluSp SINE Alu -2 311 1 6415 46 6 4 chr6 95713467 95714245 -86700997 - L1PA5 LINE L1 -1 6153 5374 367 130 0 0 chr6 95714326 95714380 -86700862 - MER53 DNA DNA 0 189 136 676 174 9 0 chr6 95714409 95714518 -86700724 - FLAM_C SINE Alu -25 118 9 459 117 43 75 chr6 95714531 95714625 -86700617 - MER53 DNA DNA -98 91 1 2865 13 0 3 chr6 95714995 95715307 -86699935 + AluYa5 SINE Alu 1 311 0 180 0 0 0 chr6 95715311 95715331 -86699911 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 400 49 246 0 chr6 95715483 95715544 -86699698 - MADE1 DNA Mariner 0 80 5 192 309 103 0 chr6 95715628 95715696 -86699546 + L3b LINE CR1 1472 1546 -37 234 174 0 0 chr6 95716525 95716571 -86698671 + T-rich Low_complexity Low_complexity 1 46 0 725 120 64 16 chr6 95716576 95716701 -86698541 - FLAM_C SINE Alu -12 131 1 1845 168 0 0 chr6 95716801 95717093 -86698149 + AluJo SINE Alu 9 300 -12 247 342 70 9 chr6 95717455 95717569 -86697673 - L2 LINE L2 -201 3071 2951 417 204 29 66 chr6 95717791 95717928 -86697314 + AluJb SINE Alu 3 134 -178 2061 136 62 117 chr6 95717993 95718313 -86696929 - MLT1C LTR MaLR 0 467 180 1912 156 6 16 chr6 95718313 95718628 -86696614 - AluJb SINE Alu 0 312 1 2061 136 62 117 chr6 95718628 95718778 -86696464 - MLT1C LTR MaLR -287 180 23 2426 70 7 3 chr6 95719282 95719583 -86695659 - AluSg SINE Alu -7 303 2 2307 92 3 3 chr6 95719587 95719892 -86695350 - AluSx SINE Alu -7 305 1 247 247 21 21 chr6 95721448 95721541 -86693701 + (CCG)n Simple_repeat Simple_repeat 3 95 0 22 0 0 0 chr6 95721607 95721629 -86693613 + GC_rich Low_complexity Low_complexity 1 22 0 307 225 38 12 chr6 95724311 95724391 -86690851 + MER103 DNA DNA 30 111 -55 1265 170 55 48 chr6 95724503 95724792 -86690450 + MER58B DNA MER1_type 48 338 -3 1924 134 27 13 chr6 95725726 95726025 -86689217 - AluSx SINE Alu -9 303 1 * 2372 96 0 0 chr6 95726025 95726326 -86688916 - AluSg SINE Alu -9 301 1 2413 81 3 0 chr6 95726334 95726632 -86688610 - AluY SINE Alu -12 299 1 1881 141 20 7 chr6 95726857 95727155 -86688087 - AluJb SINE Alu -9 303 2 2326 85 10 0 chr6 95729309 95729604 -86685638 - AluSg SINE Alu -12 298 1 2199 108 0 3 chr6 95729810 95730105 -86685137 - AluY SINE Alu -17 294 1 2268 95 7 3 chr6 95730228 95730522 -86684720 - AluSx SINE Alu -17 295 1 409 237 58 43 chr6 95730617 95730756 -86684486 + MIR SINE MIR 47 187 -75 234 291 218 31 chr6 95731205 95731559 -86683683 + L2 LINE L2 1848 2267 -1047 2225 118 10 0 chr6 95731586 95731890 -86683352 - AluSx SINE Alu -5 307 1 240 191 32 16 chr6 95731937 95732000 -86683242 - Charlie8 DNA MER1_type -2273 144 81 1964 148 7 0 chr6 95732064 95732361 -86682881 - AluSx SINE Alu -13 299 1 303 81 0 0 chr6 95732603 95732640 -86682602 - U2 snRNA snRNA -151 37 1 2125 104 26 13 chr6 95732813 95733122 -86682120 - AluSq SINE Alu 0 313 1 182 183 280 65 chr6 95733226 95733319 -86681923 + MER5A DNA MER1_type 24 136 -53 309 294 28 9 chr6 95733386 95733495 -86681747 - Charlie8 DNA MER1_type -2246 171 61 1795 115 97 7 chr6 95733563 95733832 -86681410 - AluSx SINE Alu -19 293 1 2106 110 0 23 chr6 95734287 95734587 -86680655 - AluSp SINE Alu -19 294 2 1261 182 74 54 chr6 95734589 95734622 -86680620 - AluJo SINE Alu 0 302 271 2158 113 3 10 chr6 95734622 95734924 -86680318 + AluSx SINE Alu 2 301 -11 1261 182 74 54 chr6 95734924 95735186 -86680056 - AluJo SINE Alu -31 271 1 466 52 0 0 chr6 95735595 95735653 -86679589 - AluSp/q SINE Alu -13 300 243 1036 101 7 0 chr6 95735653 95735791 -86679451 - AluSp SINE Alu -174 139 1 2336 96 3 0 chr6 95735987 95736288 -86678954 - AluSx SINE Alu -10 302 1 2132 120 0 3 chr6 95736820 95737119 -86678123 - AluSq SINE Alu -15 298 1 2444 197 58 55 chr6 95738006 95738682 -86676560 + L1ME1 LINE L1 5480 6157 -9 2141 129 7 0 chr6 95739100 95739402 -86675840 + AluSx SINE Alu 1 304 -8 761 175 0 36 chr6 95740107 95740244 -86674998 - FLAM_C SINE Alu -1 132 1 2174 111 0 14 chr6 95741710 95742007 -86673235 + AluSx SINE Alu 1 293 -19 2154 84 56 0 chr6 95742479 95742766 -86672476 + AluY SINE Alu 1 303 -8 1204 156 143 8 chr6 95743523 95743793 -86671449 - AluJb SINE Alu 0 309 7 2385 95 3 0 chr6 95743889 95744194 -86671048 - AluSp SINE Alu -6 307 2 2180 70 46 26 chr6 95744519 95744821 -86670421 - AluSq SINE Alu -5 308 1 22 56 0 0 chr6 95745636 95745672 -86669570 + AT_rich Low_complexity Low_complexity 1 36 0 2420 80 0 13 chr6 95745941 95746255 -86668987 - AluY SINE Alu -1 310 1 2048 103 32 4 chr6 95746260 95746418 -86668824 - AluSc SINE Alu -20 289 118 426 20 0 0 chr6 95746418 95746469 -86668773 + (TG)n Simple_repeat Simple_repeat 2 52 0 2048 103 32 4 chr6 95746469 95746591 -86668651 - AluSc SINE Alu -191 118 1 2275 59 52 7 chr6 95746594 95746883 -86668359 - AluY SINE Alu -9 302 1 192 120 0 0 chr6 95746948 95746973 -86668269 - MIR SINE MIR -146 62 38 1102 53 8 0 chr6 95748297 95748428 -86666814 + AluY SINE Alu 2 133 -178 21 0 0 0 chr6 95748428 95748449 -86666793 + AT_rich Low_complexity Low_complexity 1 21 0 2327 80 30 3 chr6 95748744 95749044 -86666198 - AluSq SINE Alu -5 308 1 2428 69 0 0 chr6 95749221 95749511 -86665731 - AluSc SINE Alu -19 290 1 1228 177 23 5 chr6 95749539 95749754 -86665488 - MER20 DNA MER1_type 0 219 1 1212 93 0 0 chr6 95749766 95749917 -86665325 + AluSg/x SINE Alu 156 306 -6 252 219 95 67 chr6 95750359 95750464 -86664778 - MER5B DNA MER1_type -69 109 2 480 256 201 26 chr6 95750621 95750855 -86664387 + L2 LINE L2 1557 1831 -1483 1181 261 258 28 chr6 95751285 95752220 -86663022 + L2 LINE L2 1880 3074 -239 2033 135 17 0 chr6 95752606 95752894 -86662348 + AluSx SINE Alu 1 293 -19 333 205 51 26 chr6 95753475 95753553 -86661689 - MLT1J1 LTR MaLR -121 325 246 1222 129 0 0 chr6 95753894 95754064 -86661178 - AluSp SINE Alu -10 303 134 2288 114 0 0 chr6 95754064 95754371 -86660871 - AluSx SINE Alu -5 307 1 1044 149 154 5 chr6 95754540 95754741 -86660501 + MER46A DNA MER2_type 1 231 -5 2139 89 3 10 chr6 95755134 95755425 -86659817 - AluSc SINE Alu -20 289 1 2457 81 0 0 chr6 95756342 95756640 -86658602 + AluSq SINE Alu 10 307 -6 2398 87 3 0 chr6 95756643 95756952 -86658290 + AluSg SINE Alu 1 310 0 2277 89 0 0 chr6 95757066 95757359 -86657883 - AluY SINE Alu -16 295 3 363 297 19 45 chr6 95757852 95758007 -86657235 - MIR SINE MIR -15 247 97 414 268 127 89 chr6 95759541 95759770 -86655472 - MIR3 SINE MIR -23 185 12 1364 179 0 91 chr6 95760358 95760517 -86654725 - AluJo SINE Alu -22 290 173 1782 170 7 3 chr6 95760517 95760806 -86654436 - AluJb SINE Alu -12 300 11 1364 179 0 91 chr6 95760806 95760965 -86654277 - AluJo SINE Alu -139 173 1 21 0 0 0 chr6 95761417 95761438 -86653804 + AT_rich Low_complexity Low_complexity 1 21 0 1980 122 41 3 chr6 95761469 95761763 -86653479 + AluSx SINE Alu 1 305 -7 2175 115 0 10 chr6 95761763 95762067 -86653175 + AluSx SINE Alu 1 301 -11 1193 191 88 44 chr6 95762067 95762329 -86652913 - AluJo SINE Alu -23 279 1 466 52 0 0 chr6 95762738 95762796 -86652446 - AluSp/q SINE Alu -13 300 243 1036 101 7 0 chr6 95762796 95762934 -86652308 - AluSp SINE Alu -174 139 1 2328 97 3 0 chr6 95763131 95763431 -86651811 - AluSx SINE Alu -11 301 1 2132 120 0 3 chr6 95763963 95764262 -86650980 - AluSq SINE Alu -15 298 1 2234 207 62 54 chr6 95765149 95765821 -86649421 + L1ME1 LINE L1 5480 6157 -9 2132 130 7 0 chr6 95766239 95766540 -86648702 + AluSx SINE Alu 1 303 -9 761 175 0 36 chr6 95767246 95767383 -86647859 - FLAM_C SINE Alu -1 132 1 2174 111 0 14 chr6 95768849 95769146 -86646096 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr6 95769396 95769418 -86645824 + AT_rich Low_complexity Low_complexity 1 22 0 2141 87 56 0 chr6 95769620 95769907 -86645335 + AluY SINE Alu 1 303 -8 1204 156 143 8 chr6 95770666 95770936 -86644306 - AluJb SINE Alu 0 309 7 2385 95 3 0 chr6 95771032 95771337 -86643905 - AluSp SINE Alu -6 307 2 2180 70 46 26 chr6 95771662 95771964 -86643278 - AluSq SINE Alu -5 308 1 22 56 0 0 chr6 95772780 95772816 -86642426 + AT_rich Low_complexity Low_complexity 1 36 0 2420 80 0 13 chr6 95773085 95773399 -86641843 - AluY SINE Alu -1 310 1 2048 103 32 4 chr6 95773404 95773562 -86641680 - AluSc SINE Alu -20 289 118 282 29 0 0 chr6 95773562 95773597 -86641645 + (TG)n Simple_repeat Simple_repeat 2 36 0 2048 103 32 4 chr6 95773597 95773719 -86641523 - AluSc SINE Alu -191 118 1 2238 62 52 7 chr6 95773722 95774011 -86641231 - AluY SINE Alu -9 302 1 192 120 0 0 chr6 95774076 95774101 -86641141 - MIR SINE MIR -146 62 38 1102 53 8 0 chr6 95775425 95775556 -86639686 + AluY SINE Alu 2 133 -178 21 0 0 0 chr6 95775556 95775577 -86639665 + AT_rich Low_complexity Low_complexity 1 21 0 2167 91 34 7 chr6 95775872 95776169 -86639073 - AluSq SINE Alu -8 305 1 2308 76 3 3 chr6 95776346 95776636 -86638606 - AluSc SINE Alu -19 290 1 1228 177 23 5 chr6 95776664 95776879 -86638363 - MER20 DNA MER1_type 0 219 1 1212 93 0 0 chr6 95776891 95777042 -86638200 + AluSg/x SINE Alu 154 304 -6 252 219 95 67 chr6 95777484 95777589 -86637653 - MER5B DNA MER1_type -69 109 2 480 256 201 26 chr6 95777746 95777980 -86637262 + L2 LINE L2 1557 1831 -1483 1163 262 258 28 chr6 95778410 95779345 -86635897 + L2 LINE L2 1880 3074 -239 2010 139 17 0 chr6 95779731 95780019 -86635223 + AluSx SINE Alu 1 293 -19 333 205 51 26 chr6 95780600 95780678 -86634564 - MLT1J1 LTR MaLR -121 325 246 1195 135 0 0 chr6 95781018 95781188 -86634054 - AluSp SINE Alu -10 303 134 2288 114 0 0 chr6 95781188 95781495 -86633747 - AluSx SINE Alu -5 307 1 1044 149 154 5 chr6 95781664 95781865 -86633377 + MER46A DNA MER2_type 1 231 -5 2139 89 3 10 chr6 95782258 95782549 -86632693 - AluSc SINE Alu -20 289 1 2448 81 0 0 chr6 95783466 95783763 -86631479 + AluSq SINE Alu 10 306 -7 2398 87 3 0 chr6 95783766 95784075 -86631167 + AluSg SINE Alu 1 310 0 27 29 0 0 chr6 95787233 95787267 -86627975 + AT_rich Low_complexity Low_complexity 1 34 0 2334 98 0 22 chr6 95787734 95788051 -86627191 - AluSq SINE Alu -3 310 1 272 235 235 0 chr6 95789782 95789880 -86625362 + MIR3 SINE MIR 82 202 -6 2235 111 0 0 chr6 95790296 95790594 -86624648 - AluSx SINE Alu -14 298 1 2325 92 0 3 chr6 95792347 95792639 -86622603 - AluSg SINE Alu -19 291 1 1890 173 3 0 chr6 95792890 95793191 -86622051 - AluJb SINE Alu -10 302 1 448 238 90 8 chr6 95793350 95793472 -86621770 - MLT1J LTR MaLR -361 150 19 240 241 35 124 chr6 95793475 95793620 -86621622 - L2 LINE L2 -889 2425 2294 186 43 0 0 chr6 95793815 95793838 -86621404 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2107 124 3 0 chr6 95793842 95794124 -86621118 - AluSq SINE Alu -25 288 6 1121 235 30 11 chr6 95795496 95795764 -86619478 + MLT1H LTR MaLR 14 286 -263 580 200 17 33 chr6 95795848 95795968 -86619274 + MLT1H LTR MaLR 432 549 0 433 268 62 45 chr6 95797193 95797372 -86617870 + MIR SINE MIR 37 218 -44 1785 163 14 0 chr6 95797822 95798110 -86617132 - AluJb SINE Alu -12 300 9 233 303 165 0 chr6 95798381 95798480 -86616762 - L2 LINE L2 -47 3225 3109 335 284 18 21 chr6 95798480 95798615 -86616627 + MIR SINE MIR 2 135 -73 2363 97 0 25 chr6 95798615 95798962 -86616280 - AluSx SINE Alu 0 339 1 186 180 66 49 chr6 95799002 95799063 -86616179 - L2 LINE L2 -931 2383 2322 189 367 0 25 chr6 95799243 95799322 -86615920 - L2 LINE L2 0 3272 3196 260 278 69 0 chr6 95800380 95800452 -86614790 + MIR SINE MIR 183 259 -3 2317 112 3 0 chr6 95800467 95800772 -86614470 - AluSp SINE Alu -7 306 1 2340 80 3 13 chr6 95800800 95801099 -86614143 - AluSp SINE Alu -17 296 1 2367 71 0 17 chr6 95801378 95801709 -86613533 + AluSx SINE Alu 1 326 0 2118 130 0 0 chr6 95802320 95802621 -86612621 + AluSx SINE Alu 1 301 -11 294 95 0 0 chr6 95802670 95802712 -86612530 + (CAT)n Simple_repeat Simple_repeat 3 44 0 369 221 207 21 chr6 95803224 95803369 -86611873 + MIR3 SINE MIR 34 205 -3 881 90 0 0 chr6 95803861 95803972 -86611270 - HY1 scRNA scRNA -1 111 1 21 0 0 0 chr6 95804387 95804408 -86610834 + AT_rich Low_complexity Low_complexity 1 21 0 2129 102 42 0 chr6 95804460 95804743 -86610499 + AluSx SINE Alu 1 295 -17 1013 107 0 0 chr6 95805081 95805212 -86610030 - AluSq/x SINE Alu -182 131 1 1566 173 35 0 chr6 95805459 95805719 -86609523 - AluJb SINE Alu -18 294 26 230 318 0 0 chr6 95806419 95806485 -86608757 + T-rich Low_complexity Low_complexity 3 68 0 2533 52 0 10 chr6 95806548 95806858 -86608384 - AluY SINE Alu -4 307 1 501 288 87 104 chr6 95807148 95807538 -86607704 + L2 LINE L2 1851 2246 -1068 1044 109 0 22 chr6 95807538 95807900 -86607342 + (TCC)n Simple_repeat Simple_repeat 1 353 0 936 203 0 0 chr6 95807902 95808055 -86607187 - FRAM SINE Alu -13 153 1 501 288 87 104 chr6 95808055 95808368 -86606874 + L2 LINE L2 2247 2543 -771 1837 160 0 3 chr6 95808368 95808668 -86606574 - AluJb SINE Alu -13 299 1 501 288 87 104 chr6 95808668 95808866 -86606376 + L2 LINE L2 2543 2743 -571 21 0 0 0 chr6 95809855 95809876 -86605366 + AT_rich Low_complexity Low_complexity 1 21 0 308 95 0 0 chr6 95810691 95810733 -86604509 + MADE1 DNA Mariner 1 42 -38 203 363 0 0 chr6 95810765 95810845 -86604397 - L3b LINE CR1 -121 1462 1383 195 42 0 0 chr6 95810850 95810874 -86604368 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2146 113 0 0 chr6 95810877 95811161 -86604081 - AluSx SINE Alu -28 284 1 324 202 12 60 chr6 95811173 95811257 -86603985 + MER116 DNA Mariner 1 80 0 208 366 73 8 chr6 95811372 95811495 -86603747 - L2 LINE L2 -8 3305 3175 583 179 20 17 chr6 95811839 95811965 -86603277 + MIR SINE MIR 39 164 -61 288 70 0 0 chr6 95812208 95812251 -86602991 + (TG)n Simple_repeat Simple_repeat 2 44 0 1860 181 0 0 chr6 95812859 95813157 -86602085 - AluSx SINE Alu -12 300 3 2065 141 0 10 chr6 95813163 95813461 -86601781 - AluSx SINE Alu -17 295 1 242 209 130 9 chr6 95813554 95813669 -86601573 - L1ME LINE L1 -226 5895 5767 883 268 110 43 chr6 95813696 95814307 -86600935 - HAL1 LINE L1 -14 2493 1842 2145 106 0 7 chr6 95814339 95814646 -86600596 - AluSx SINE Alu 0 307 3 300 250 31 23 chr6 95814687 95814815 -86600427 - Charlie7 DNA MER1_type -52 2560 2432 778 259 74 5 chr6 95814884 95815100 -86600142 - HAL1 LINE L1 -652 1855 1625 6149 140 24 30 chr6 95815101 95815339 -86599903 + L1MC2 LINE L1 5189 5427 -917 1957 143 16 3 chr6 95815339 95815647 -86599595 + AluJb SINE Alu 1 312 0 6149 140 24 30 chr6 95815647 95816567 -86598675 + L1MC2 LINE L1 5427 6339 -5 705 285 113 57 chr6 95816515 95817767 -86597475 - HAL1 LINE L1 -842 1665 259 * 1398 208 135 54 chr6 95817939 95818336 -86596906 + MLT1D LTR MaLR 2 365 -140 2189 92 0 30 chr6 95818336 95818639 -86596603 - AluSc SINE Alu -15 294 1 2134 140 0 0 chr6 95818643 95818943 -86596299 - AluSx SINE Alu -12 300 1 1398 208 135 54 chr6 95818943 95819006 -86596236 + MLT1D LTR MaLR 367 505 0 2073 97 0 4 chr6 95819245 95819512 -86595730 - AluSq SINE Alu -6 307 42 935 181 156 22 chr6 95819677 95819947 -86595295 - LTR8A LTR ERV1 -111 616 311 338 281 124 5 chr6 95819954 95820164 -86595078 - L1ME LINE L1 -570 5551 5317 774 247 131 19 chr6 95820879 95821239 -86594003 - L1ME LINE L1 -1250 4896 4497 22 88 0 0 chr6 95821254 95821311 -86593931 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr6 95821413 95821436 -86593806 + AT_rich Low_complexity Low_complexity 1 23 0 618 174 48 155 chr6 95821572 95821669 -86593573 - L1MC5 LINE L1 -313 7648 7542 2350 65 10 3 chr6 95821669 95821962 -86593280 - AluY SINE Alu -16 295 1 618 174 48 155 chr6 95821962 95822087 -86593155 - L1MC5 LINE L1 -419 7542 7405 2443 73 0 13 chr6 95822087 95822437 -86592805 + AluY SINE Alu 1 346 0 618 174 48 155 chr6 95822437 95823328 -86591914 - L1MC5 LINE L1 -556 7405 6621 1983 165 3 0 chr6 95823336 95823651 -86591591 + 7SLRNA srpRNA srpRNA 1 316 -4 1803 184 21 31 chr6 95824281 95824666 -86590576 - LTR52 LTR ERVL -38 383 3 522 165 96 160 chr6 95824823 95825011 -86590231 - MER69A DNA AcHobo -1 176 1 292 261 35 49 chr6 95825041 95825183 -86590059 - L1ME1 LINE L1 -20 6146 6007 196 333 162 27 chr6 95825205 95825236 -86590006 + L2 LINE L2 3168 3193 -120 648 49 0 12 chr6 95825236 95825317 -86589925 + MADE1 DNA Mariner 1 80 0 196 333 162 27 chr6 95825317 95825396 -86589846 + L2 LINE L2 3193 3293 -20 214 222 22 0 chr6 95825651 95825696 -86589546 + L2 LINE L2 3258 3303 -10 241 212 53 88 chr6 95827314 95827427 -86587815 - L1MEd LINE L1 -5377 742 634 354 354 81 35 chr6 95827429 95827946 -86587296 - L1MEd LINE L1 -5536 583 43 265 293 133 40 chr6 95828822 95828972 -86586270 + L2 LINE L2 1717 1880 -1434 * 399 316 0 0 chr6 95828967 95829062 -86586180 + L2 LINE L2 3200 3294 -19 684 238 198 13 chr6 95829062 95829365 -86585877 + L1ME4a LINE L1 5762 6120 -1 335 268 191 38 chr6 95829601 95829758 -86585484 - MIR SINE MIR -12 250 70 280 318 45 0 chr6 95830302 95830478 -86584764 - L1ME4a LINE L1 0 6121 5938 463 270 243 7 chr6 95830556 95830704 -86584538 + MER91A DNA MER1_type 1 183 -13 458 284 39 7 chr6 95830714 95830890 -86584352 - L1MC4a LINE L1 -335 5829 5665 2008 119 0 7 chr6 95831027 95831343 -86583899 - AluSq SINE Alu 0 314 1 2026 105 7 4 chr6 95831353 95831659 -86583583 - AluSq SINE Alu 0 313 7 183 100 0 0 chr6 95832190 95832220 -86583022 + (ATG)n Simple_repeat Simple_repeat 3 32 0 189 320 40 20 chr6 95832349 95832449 -86582793 - MIR SINE MIR -91 117 16 1992 169 0 0 chr6 95832563 95832864 -86582378 - AluJb SINE Alu -11 301 1 198 0 0 0 chr6 95833285 95833307 -86581935 + (T)n Simple_repeat Simple_repeat 1 22 0 2109 122 17 0 chr6 95833552 95833848 -86581394 - AluSx SINE Alu -11 301 1 2160 122 0 3 chr6 95834013 95834307 -86580935 + AluSq SINE Alu 1 293 -20 642 119 65 129 chr6 95834414 95834615 -86580627 + MER53 DNA DNA 2 189 0 1832 108 0 4 chr6 95834962 95835227 -86580015 + AluSq SINE Alu 48 311 0 747 268 80 88 chr6 95835360 95835871 -86579371 + MLT1J LTR MaLR 5 511 0 504 79 0 0 chr6 95836397 95836460 -86578782 + FRAM SINE Alu 33 95 -81 367 232 90 73 chr6 95837149 95837236 -86578006 + L2 LINE L2 2926 3010 -262 4797 157 33 10 chr6 95837236 95838002 -86577240 - LTR39 LTR ERV1 0 783 1 367 232 90 73 chr6 95838002 95838091 -86577151 + L2 LINE L2 3010 3105 -167 297 226 132 9 chr6 95838335 95838441 -86576801 + MIR SINE MIR 96 214 -48 1927 119 4 0 chr6 95838489 95838749 -86576493 + AluSx SINE Alu 1 261 -51 193 179 103 0 chr6 95839026 95839065 -86576177 + MIR3 SINE MIR 117 159 -49 405 257 44 35 chr6 95839105 95839204 -86576038 + L2 LINE L2 3200 3302 -11 2432 51 3 3 chr6 95839204 95839498 -86575744 + AluY SINE Alu 1 294 -17 405 257 44 35 chr6 95839498 95839511 -86575731 + L2 LINE L2 3302 3313 0 1590 144 50 0 chr6 95839620 95839897 -86575345 + L1MA9 LINE L1 6017 6307 -5 2234 89 10 23 chr6 95840542 95840844 -86574398 + AluSq SINE Alu 1 298 -15 226 264 124 97 chr6 95841684 95841942 -86573300 - L2 LINE L2 -89 3183 2919 196 294 50 42 chr6 95842265 95842384 -86572858 + L2 LINE L2 2736 2855 -459 376 253 0 12 chr6 95842720 95842803 -86572439 - L2 LINE L2 0 3313 3232 2257 94 24 3 chr6 95843741 95844039 -86571203 + AluSx SINE Alu 9 312 0 265 216 57 125 chr6 95844048 95844136 -86571106 - Charlie1 DNA MER1_type -2678 83 2 551 289 72 5 chr6 95844375 95844569 -86570673 + MIR SINE MIR 56 262 0 2170 112 3 10 chr6 95844915 95845218 -86570024 - AluSx SINE Alu -11 301 1 198 0 0 0 chr6 95845289 95845311 -86569931 + (A)n Simple_repeat Simple_repeat 1 22 0 2756 270 65 36 chr6 95847122 95847196 -86568046 + L1ME LINE L1 6 76 -6185 333 0 0 0 chr6 95847196 95847233 -86568009 + (CA)n Simple_repeat Simple_repeat 2 38 0 2756 270 65 36 chr6 95847233 95847306 -86567936 + L1ME LINE L1 76 145 -6116 1505 178 0 48 chr6 95847306 95847599 -86567643 + AluJo SINE Alu 14 292 -20 197 33 33 0 chr6 95847602 95847632 -86567610 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2756 270 65 36 chr6 95847632 95848437 -86566805 + L1ME LINE L1 146 926 -5335 2311 88 3 28 chr6 95848437 95848756 -86566486 + AluSq SINE Alu 3 313 0 2756 270 65 36 chr6 95848756 95849135 -86566107 + L1ME LINE L1 926 1293 -4968 2281 102 3 0 chr6 95849135 95849430 -86565812 - AluSq SINE Alu -17 296 1 2756 270 65 36 chr6 95849430 95849811 -86565431 + L1ME LINE L1 1293 1810 -4451 683 203 198 0 chr6 95849870 95850057 -86565185 - L1ME3 LINE L1 -1 6161 5938 917 296 21 0 chr6 95850987 95851274 -86563968 + L1ME3A LINE L1 5670 5962 -208 356 264 0 22 chr6 95851393 95851484 -86563758 + L1ME LINE L1 5477 5565 -556 241 183 61 61 chr6 95851494 95851576 -86563666 - L1ME3A LINE L1 -179 5983 5902 * 346 264 86 29 chr6 95851570 95851710 -86563532 + L1ME LINE L1 5572 5719 -402 2070 122 7 0 chr6 95852006 95852293 -86562949 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr6 95852293 95852315 -86562927 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr6 95852748 95852778 -86562464 + (CA)n Simple_repeat Simple_repeat 1 30 0 2123 99 3 20 chr6 95853149 95853451 -86561791 - AluSx SINE Alu -15 297 1 272 349 48 58 chr6 95853861 95854050 -86561192 + L2 LINE L2 3076 3262 -10 446 298 53 34 chr6 95854088 95854296 -86560946 - MIR SINE MIR -32 230 19 2239 109 3 0 chr6 95854815 95855109 -86560133 + AluSx SINE Alu 1 295 -17 28 0 0 0 chr6 95855109 95855137 -86560105 + AT_rich Low_complexity Low_complexity 1 28 0 5264 181 66 46 chr6 95855413 95856514 -86558728 - Charlie1a DNA MER1_type -1527 1234 105 2375 100 0 0 chr6 95856514 95856813 -86558429 + AluSg SINE Alu 1 299 -11 5264 181 66 46 chr6 95856813 95856918 -86558324 - Charlie1a DNA MER1_type -2656 105 4 1360 162 14 5 chr6 95856943 95857165 -86558077 - AluJo SINE Alu -4 308 85 306 260 62 21 chr6 95857500 95857596 -86557646 - MIR SINE MIR -46 216 117 2157 78 6 56 chr6 95857599 95857919 -86557323 + AluSq SINE Alu 1 304 -9 1472 174 43 3 chr6 95858743 95859047 -86556195 + MER33 DNA MER1_type 8 323 -1 230 290 48 55 chr6 95860630 95860775 -86554467 - MIR SINE MIR -61 201 58 482 295 90 25 chr6 95861129 95861373 -86553869 + MIR SINE MIR 1 260 -2 2211 108 0 0 chr6 95861473 95861768 -86553474 + AluSx SINE Alu 2 296 -16 224 347 97 8 chr6 95862497 95862621 -86552621 - L2 LINE L2 0 3272 3138 196 229 66 0 chr6 95862653 95862714 -86552528 + MIR SINE MIR 26 90 -118 225 276 52 0 chr6 95863249 95863307 -86551935 - Charlie8 DNA MER1_type -1000 1417 1357 2282 95 3 3 chr6 95863394 95863689 -86551553 - AluSq SINE Alu -16 297 3 291 282 45 38 chr6 95864031 95864186 -86551056 + MLT1L LTR MaLR 99 318 -297 2317 205 53 58 chr6 95865219 95865610 -86549632 - MLT1E3 LTR MaLR 0 624 236 1967 108 30 56 chr6 95865610 95865915 -86549327 + AluSq SINE Alu 1 297 -16 2317 205 53 58 chr6 95865915 95866148 -86549094 - MLT1E3 LTR MaLR -388 236 3 311 325 82 53 chr6 95866152 95866568 -86548674 + HERV16 LTR ERVL 1 428 -4568 3108 329 61 25 chr6 95866585 95868203 -86547039 - ERVL LTR ERVL -2761 3003 1215 1956 125 21 3 chr6 95868372 95868659 -86546583 + AluSx SINE Alu 2 293 -19 497 349 61 56 chr6 95868712 95869319 -86545923 - ERVL LTR ERVL -4018 978 369 1921 151 6 22 chr6 95870138 95870455 -86544787 + AluJo SINE Alu 1 312 0 2083 105 0 0 chr6 95870485 95870762 -86544480 + AluSg SINE Alu 1 277 -33 996 147 12 18 chr6 95870938 95871101 -86544141 + AluJb SINE Alu 136 297 -15 2199 107 0 19 chr6 95871101 95871418 -86543824 + AluSx SINE Alu 1 311 -1 1958 121 3 44 chr6 95872649 95872946 -86542296 + AluSx SINE Alu 1 285 -27 267 24 73 0 chr6 95872946 95872987 -86542255 + A-rich Low_complexity Low_complexity 2 180 0 2271 131 0 0 chr6 95873908 95874220 -86541022 + AluSx SINE Alu 1 312 0 1852 156 40 3 chr6 95874282 95874583 -86540659 + AluSx SINE Alu 1 312 0 3713 185 31 77 chr6 95874619 95875368 -86539874 - L1M4 LINE L1 -4928 1614 922 2087 122 0 3 chr6 95875368 95875674 -86539568 + AluSx SINE Alu 1 305 0 3713 185 31 77 chr6 95875674 95875946 -86539296 - L1M4 LINE L1 -5620 922 639 4442 117 48 13 chr6 95875947 95876632 -86538610 - MER50 LTR ERV1 -23 711 3 2597 233 6 80 chr6 95876635 95877347 -86537895 - L1M4 LINE L1 -5883 659 1 553 251 20 88 chr6 95877468 95877573 -86537669 - MIR SINE MIR 0 262 151 1992 159 3 0 chr6 95877573 95877875 -86537367 - AluJb SINE Alu -9 303 1 553 251 20 88 chr6 95877875 95877960 -86537282 - MIR SINE MIR -111 151 90 2157 109 0 30 chr6 95877960 95878263 -86536979 + AluY SINE Alu 1 294 -17 553 251 20 88 chr6 95878263 95878322 -86536920 - MIR SINE MIR -172 90 29 36 0 0 0 chr6 95878513 95878549 -86536693 + AT_rich Low_complexity Low_complexity 1 36 0 2249 116 0 0 chr6 95878587 95878881 -86536361 + AluSx SINE Alu 1 294 -18 688 129 45 38 chr6 95879038 95879170 -86536072 - FLAM_C SINE Alu 0 133 1 351 261 157 9 chr6 95879178 95879293 -86535949 - L2 LINE L2 -8 3264 3133 2173 113 7 0 chr6 95879779 95880070 -86535172 + AluSp SINE Alu 1 293 -20 1890 172 3 0 chr6 95880258 95880566 -86534676 + AluSx SINE Alu 1 309 -3 2340 103 3 0 chr6 95880803 95881103 -86534139 + AluSx SINE Alu 1 301 -11 279 0 0 0 chr6 95881103 95881134 -86534108 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 324 0 0 0 chr6 95881133 95881169 -86534073 + (GA)n Simple_repeat Simple_repeat 2 37 0 2303 102 0 0 chr6 95881631 95881925 -86533317 - AluSg SINE Alu -16 294 1 2124 115 0 14 chr6 95882378 95882514 -86532728 + AluSq SINE Alu 1 137 -176 2371 98 0 0 chr6 95882514 95882821 -86532421 + AluSc SINE Alu 1 307 -2 2124 115 0 14 chr6 95882821 95882979 -86532263 + AluSq SINE Alu 137 291 -22 24 0 0 0 chr6 95882979 95883003 -86532239 + AT_rich Low_complexity Low_complexity 1 24 0 348 305 116 52 chr6 95883577 95883810 -86531432 + L2 LINE L2 2507 2754 -560 378 0 0 0 chr6 95883839 95883881 -86531361 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2092 115 0 0 chr6 95883884 95884154 -86531088 - AluSx SINE Alu -32 280 11 390 328 42 72 chr6 95884177 95884509 -86530733 + L2 LINE L2 2951 3272 0 234 0 0 0 chr6 95884904 95884930 -86530312 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2209 75 0 4 chr6 95884944 95885212 -86530030 - AluSg SINE Alu -43 267 1 2076 127 7 0 chr6 95885765 95886057 -86529185 - AluSx SINE Alu -18 294 1 230 327 9 64 chr6 95886233 95886343 -86528899 + MIR SINE MIR 48 151 -111 2067 93 0 11 chr6 95886486 95886755 -86528487 + AluSg SINE Alu 45 310 0 792 236 52 26 chr6 95887628 95887861 -86527381 - MIR SINE MIR -21 241 3 193 350 0 92 chr6 95887885 95888005 -86527237 - MIR SINE MIR -63 145 37 2487 87 3 0 chr6 95888077 95888387 -86526855 - AluSp SINE Alu -2 311 1 2376 96 3 0 chr6 95888915 95889217 -86526025 + AluSp SINE Alu 1 303 -10 2281 113 0 3 chr6 95889228 95889529 -86525713 + AluSx SINE Alu 1 300 -12 2525 72 3 0 chr6 95890280 95890586 -86524656 - AluSc SINE Alu -2 307 1 707 113 0 53 chr6 95890822 95891017 -86524225 - AluSg/x SINE Alu 0 346 159 402 162 52 81 chr6 95891091 95891227 -86524015 - AluSq SINE Alu -157 156 25 489 280 110 0 chr6 95941624 95941806 -86473436 + MIR SINE MIR 6 207 -55 26 30 0 0 chr6 95941993 95942026 -86473216 + AT_rich Low_complexity Low_complexity 1 33 0 1277 266 49 55 chr6 95942853 95943323 -86471919 + L2 LINE L2 2839 3305 -8 243 255 224 10 chr6 95943340 95943438 -86471804 - MIR3 SINE MIR -75 133 15 816 238 6 0 chr6 95943891 95944051 -86471191 - FRAM SINE Alu -4 162 2 1210 174 9 9 chr6 95946052 95946271 -86468971 - MER20 DNA MER1_type 0 219 1 193 318 34 95 chr6 95947310 95947458 -86467784 - MIR SINE MIR -79 183 45 341 294 176 0 chr6 95947611 95947713 -86467529 + L2 LINE L2 3149 3268 -4 2419 64 3 0 chr6 95947756 95948054 -86467188 + AluY SINE Alu 1 299 -12 783 191 12 12 chr6 95948915 95949077 -86466165 + MER20 DNA MER1_type 3 164 -55 189 250 36 36 chr6 95949259 95949315 -86465927 + L2 LINE L2 3208 3263 -9 1920 103 0 0 chr6 95952167 95952420 -86462822 - AluSc SINE Alu -56 253 1 1085 215 44 4 chr6 95952913 95953141 -86462101 - MIR SINE MIR -22 240 4 368 246 141 0 chr6 95953697 95953712 -86461530 - L1MA10 LINE L1 -2 6332 6318 379 245 51 75 chr6 95953712 95953965 -86461277 - L1ME1 LINE L1 -19 6216 5970 2711 178 69 12 chr6 95954066 95955076 -86460166 - L1ME1 LINE L1 -279 5956 4892 621 165 0 0 chr6 95955090 95955187 -86460055 - Tigger7 DNA MER2_type -1 2486 2390 * 1438 197 15 4 chr6 95955186 95955450 -86459792 - Tigger7 DNA MER2_type -2220 267 1 1478 212 99 56 chr6 95955450 95956115 -86459127 - L1ME1 LINE L1 -1349 4866 4173 4965 242 51 21 chr6 95956152 95959040 -86456202 - L1ME1 LINE L1 -2786 3429 499 1522 159 0 9 chr6 95959072 95959304 -86455938 + AluSq SINE Alu 64 293 -20 511 277 30 6 chr6 95959370 95959536 -86455706 - MARNA DNA Mariner -90 496 327 180 135 0 0 chr6 95959536 95959573 -86455669 + (T)n Simple_repeat Simple_repeat 1 37 0 421 240 0 0 chr6 95959596 95959696 -86455546 - MARNA DNA Mariner -277 309 210 36 23 0 0 chr6 95959713 95959756 -86455486 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr6 95959953 95959981 -86455261 + AT_rich Low_complexity Low_complexity 1 28 0 860 138 7 22 chr6 95960797 95960935 -86454307 + AluJo SINE Alu 1 136 -176 21 0 0 0 chr6 95961080 95961101 -86454141 + AT_rich Low_complexity Low_complexity 1 21 0 1076 215 28 22 chr6 95961187 95961683 -86453559 + MLT1E LTR MaLR 1 593 0 1320 249 100 28 chr6 95961852 95962537 -86452705 + L1MC4a LINE L1 5192 5403 -743 2541 41 7 0 chr6 95962547 95962842 -86452400 + AluY SINE Alu 1 297 -14 24 0 0 0 chr6 95963096 95963120 -86452122 + AT_rich Low_complexity Low_complexity 1 24 0 187 286 104 0 chr6 95964022 95964099 -86451143 - L2 LINE L2 -880 2434 2350 2181 117 3 13 chr6 95964253 95964562 -86450680 - AluSq SINE Alu -7 306 1 1686 132 71 82 chr6 95964605 95964791 -86450451 + THE1C LTR MaLR 1 187 -188 234 0 0 0 chr6 95964791 95964817 -86450425 + (TC)n Simple_repeat Simple_repeat 2 27 0 1686 132 71 82 chr6 95964817 95965009 -86450233 + THE1C LTR MaLR 187 375 0 183 176 176 0 chr6 95966531 95966582 -86448660 + L3b LINE CR1 1271 1330 -253 180 77 0 0 chr6 95966910 95966936 -86448306 + (TG)n Simple_repeat Simple_repeat 1 26 0 350 309 97 37 chr6 95967660 95967877 -86447365 + MIR SINE MIR 24 253 -9 250 352 100 40 chr6 95968281 95968602 -86446640 + L2 LINE L2 2918 3257 -15 260 379 50 63 chr6 95968810 95969129 -86446113 - L2 LINE L2 -43 3229 2915 436 351 54 0 chr6 95970046 95970194 -86445048 + L2 LINE L2 3116 3271 -1 403 246 119 8 chr6 95970543 95970677 -86444565 - MIR SINE MIR -46 216 68 927 299 68 28 chr6 95971380 95971851 -86443391 + LTR16C LTR ERVL 1 490 -1 5927 73 1 7 chr6 95971944 95972782 -86442460 - L1PA13 LINE L1 -1 6162 5330 246 351 32 32 chr6 95972785 95972970 -86442272 - MIR SINE MIR -50 212 28 21 36 0 0 chr6 95973261 95973289 -86441953 + AT_rich Low_complexity Low_complexity 1 28 0 205 211 0 0 chr6 95973297 95973335 -86441907 - L3b LINE CR1 0 1583 1546 * 760 310 88 0 chr6 95973305 95973566 -86441676 - L3 LINE CR1 -8 1569 1286 1057 191 111 67 chr6 95974251 95974633 -86440609 - MLT1D LTR MaLR 0 505 96 2177 125 10 0 chr6 95974633 95974936 -86440306 - AluSx SINE Alu -6 306 1 1057 191 111 67 chr6 95974936 95975030 -86440212 - MLT1D LTR MaLR -409 96 8 371 289 157 12 chr6 95975034 95975200 -86440042 + MIR SINE MIR 66 255 -7 192 356 22 22 chr6 95975229 95975364 -86439878 + MIR SINE MIR 78 212 -50 675 292 76 23 chr6 95975383 95975647 -86439595 - L3 LINE CR1 -591 986 709 408 20 0 0 chr6 95976010 95976059 -86439183 + (CA)n Simple_repeat Simple_repeat 1 49 0 309 89 0 0 chr6 95976190 95976235 -86439007 + (CA)n Simple_repeat Simple_repeat 2 46 0 326 328 8 8 chr6 95977493 95977621 -86437621 - MER5A DNA MER1_type -1 188 61 385 164 88 7 chr6 95977625 95977923 -86437319 - L1MC3 LINE L1 0 7785 6017 22 0 0 0 chr6 95978198 95978220 -86437022 + AT_rich Low_complexity Low_complexity 1 22 0 345 24 0 0 chr6 95978267 95978309 -86436933 + (CA)n Simple_repeat Simple_repeat 2 43 0 1281 249 66 42 chr6 95978832 95979426 -86435816 - L1ME4a LINE L1 -53 6068 5461 22 0 0 0 chr6 95979522 95979544 -86435698 + AT_rich Low_complexity Low_complexity 1 22 0 1180 215 5 0 chr6 95979569 95979792 -86435450 - MER58A DNA MER1_type 0 224 1 244 70 47 0 chr6 95980189 95980232 -86435010 + (TA)n Simple_repeat Simple_repeat 1 45 0 1991 174 100 32 chr6 95980266 95980697 -86434545 - MLT2B1 LTR ERVL -60 460 1 13993 204 39 32 chr6 95980902 95983753 -86431489 + L1MA7 LINE L1 678 3509 -2986 2116 123 23 0 chr6 95983753 95984054 -86431188 - AluSp SINE Alu -5 308 1 13993 204 39 32 chr6 95984054 95985313 -86429929 + L1MA7 LINE L1 3509 4758 -1737 2344 76 14 0 chr6 95985313 95985603 -86429639 + AluY SINE Alu 1 294 -17 13993 204 39 32 chr6 95985603 95986476 -86428766 + L1MA7 LINE L1 4758 5624 -871 6461 78 8 2 chr6 95986476 95988289 -86426953 + L1PA13 LINE L1 4324 6144 -19 13993 204 39 32 chr6 95988289 95989250 -86425992 + L1MA7 LINE L1 5624 6492 -3 508 164 19 39 chr6 95989270 95989406 -86425836 + L1MD3 LINE L1 7692 7985 -5 2100 139 0 0 chr6 95990650 95990953 -86424289 + AluSg SINE Alu 1 303 -7 2071 103 0 61 chr6 95991189 95991501 -86423741 + AluSx SINE Alu 1 293 -19 258 105 0 0 chr6 95994765 95994803 -86420439 + (CA)n Simple_repeat Simple_repeat 2 39 0 436 305 36 24 chr6 95995874 95996041 -86419201 - MIR3 SINE MIR -35 173 5 404 191 223 6 chr6 95996969 95997126 -86418116 + MER113 DNA MER1_type? 1 191 -330 3718 185 81 63 chr6 95997298 95998354 -86416888 - Charlie1a DNA MER1_type -380 1075 1 1873 164 64 19 chr6 95998424 95998797 -86416445 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr6 95999224 95999245 -86415997 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr6 95999888 95999922 -86415320 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 508 296 82 20 chr6 96000089 96000285 -86414957 + L2 LINE L2 3104 3311 -2 2320 88 3 10 chr6 96000288 96000594 -86414648 + AluSq SINE Alu 1 304 -9 239 136 0 136 chr6 96000761 96000827 -86414415 + Alu SINE Alu 78 112 -190 2311 105 0 3 chr6 96000832 96001138 -86414104 + AluSc SINE Alu 1 305 -4 233 376 16 32 chr6 96003129 96003254 -86411988 - L2 LINE L2 -11 3261 3139 200 180 0 40 chr6 96004634 96004684 -86410558 + (TAA)n Simple_repeat Simple_repeat 1 48 0 236 325 31 63 chr6 96005289 96005480 -86409762 - L3b LINE CR1 -98 1485 1301 225 0 0 0 chr6 96006022 96006047 -86409195 + (A)n Simple_repeat Simple_repeat 1 25 0 2388 61 10 3 chr6 96006054 96006349 -86408893 + AluY SINE Alu 1 297 -14 224 200 62 25 chr6 96006763 96006843 -86408399 + L2 LINE L2 3231 3313 0 430 250 139 14 chr6 96008036 96008180 -86407062 + MIR SINE MIR 95 256 -6 21 57 0 0 chr6 96009142 96009177 -86406065 + AT_rich Low_complexity Low_complexity 1 35 0 1246 261 50 40 chr6 96009251 96009308 -86405934 - LTR33 LTR ERVL -10 511 456 1731 144 0 77 chr6 96009308 96009621 -86405621 - AluJb SINE Alu -23 289 1 1246 261 50 40 chr6 96009621 96010061 -86405181 - LTR33 LTR ERVL -65 456 9 315 217 66 66 chr6 96010205 96010311 -86404931 + MER96 DNA MER1_type? 69 174 -1 2254 87 0 7 chr6 96010382 96010670 -86404572 + AluSc SINE Alu 1 286 -23 552 302 22 11 chr6 96010832 96011014 -86404228 - L2 LINE L2 0 3313 3130 1794 217 46 16 chr6 96011023 96011460 -86403782 + LTR40b LTR ERVL 8 457 -5 316 286 29 9 chr6 96011471 96011576 -86403666 + HERVL40 LTR ERVL 8 114 -5416 1195 259 194 25 chr6 96011772 96012366 -86402876 + HERVL40 LTR ERVL 924 1617 -3913 * 3190 272 38 15 chr6 96012364 96013303 -86401939 + HERVL40 LTR ERVL 2049 3009 -2521 22 0 0 0 chr6 96013345 96013367 -86401875 + AT_rich Low_complexity Low_complexity 1 22 0 5592 169 4 19 chr6 96013453 96015325 -86399917 - L1PA13 LINE L1 -7 6156 4297 263 208 0 0 chr6 96015327 96015380 -86399862 + MER58B DNA MER1_type 174 226 -115 537 208 67 0 chr6 96015412 96015532 -86399710 + MER58B DNA MER1_type 214 341 0 3380 246 56 16 chr6 96015542 96016442 -86398800 + HERVL40 LTR ERVL 3024 3959 -1571 609 126 0 72 chr6 96016446 96016557 -86398685 + AluSg/x SINE Alu 182 284 -28 197 32 0 32 chr6 96016560 96016591 -86398651 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2873 183 47 74 chr6 96016605 96017521 -86397721 - L1ME2 LINE L1 -63 6101 5211 251 224 32 0 chr6 96017927 96017998 -86397244 + MLT1J LTR MaLR 59 170 -322 2344 82 0 0 chr6 96018124 96018416 -86396826 + AluSg1 SINE Alu 1 292 -17 271 285 24 24 chr6 96018441 96018494 -86396748 + CT-rich Low_complexity Low_complexity 1 53 -70 2459 192 65 4 chr6 96018494 96018984 -86396258 - MLT2B1 LTR ERVL 0 520 1 271 285 24 24 chr6 96018984 96019053 -86396189 + CT-rich Low_complexity Low_complexity 52 123 0 1012 195 29 5 chr6 96019534 96019744 -86395498 + MER58C DNA MER1_type 1 215 0 409 300 96 48 chr6 96020741 96021054 -86394188 - L1MEd LINE L1 -5735 384 57 22 35 0 0 chr6 96021482 96021511 -86393731 + AT_rich Low_complexity Low_complexity 1 29 0 21 26 0 26 chr6 96021839 96021856 -86393386 + AT_rich Low_complexity Low_complexity 1 17 -21 2206 54 0 4 chr6 96021856 96022117 -86393125 - AluY SINE Alu -12 299 40 21 26 0 26 chr6 96022117 96022138 -86393104 + AT_rich Low_complexity Low_complexity 17 38 0 740 100 0 18 chr6 96022222 96022332 -86392910 - AluSx SINE Alu -11 299 192 1027 105 0 0 chr6 96022333 96022466 -86392776 - AluSx SINE Alu -171 141 9 321 243 75 28 chr6 96022669 96022776 -86392466 - MIR SINE MIR -67 141 30 182 324 68 0 chr6 96024131 96024205 -86391037 - MIR3 SINE MIR -11 197 119 406 196 0 33 chr6 96024308 96024461 -86390781 + (TA)n Simple_repeat Simple_repeat 1 148 0 667 192 172 7 chr6 96024575 96024726 -86390516 + MER5A DNA MER1_type 13 188 -1 21 89 0 0 chr6 96024990 96025046 -86390196 + AT_rich Low_complexity Low_complexity 1 56 0 326 289 46 13 chr6 96025299 96025451 -86389791 - L1ME4a LINE L1 -278 5843 5687 26 30 0 0 chr6 96025506 96025539 -86389703 + AT_rich Low_complexity Low_complexity 1 33 0 1693 140 9 44 chr6 96026005 96026040 -86389202 + L1MC1 LINE L1 6024 6059 -274 2025 178 72 2 chr6 96026040 96026440 -86388802 - MSTA LTR MaLR 0 428 1 9428 162 15 10 chr6 96026440 96028084 -86387158 - MSTA-int LTR MaLR 0 1651 1 1736 183 84 55 chr6 96028084 96028500 -86386742 - MSTA LTR MaLR 0 428 1 1693 140 9 44 chr6 96028500 96028783 -86386459 + L1MC1 LINE L1 6056 6333 0 3350 143 53 13 chr6 96028783 96029397 -86385845 - L1MC2 LINE L1 -2 6342 5696 2710 138 7 7 chr6 96029397 96029839 -86385403 + L1PA15 LINE L1 5724 6165 0 649 255 155 47 chr6 96029881 96030203 -86385039 + LTR4 LTR ERV1 1 357 -239 935 232 24 55 chr6 96030289 96030578 -86384664 + LTR4 LTR ERV1 317 596 0 2337 164 37 11 chr6 96030589 96031140 -86384102 - L1MC2 LINE L1 -630 5714 5143 1855 118 6 78 chr6 96031140 96031472 -86383770 - MER4E LTR ERV1 0 779 472 1426 221 17 14 chr6 96031687 96032049 -86383193 - L1MC2 LINE L1 -1247 4899 4537 544 303 152 30 chr6 96032294 96032723 -86382519 - L2 LINE L2 -14 3299 2819 325 313 96 6 chr6 96032833 96032999 -86382243 - L2 LINE L2 -253 3060 2880 216 0 0 0 chr6 96033039 96033063 -86382179 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 6810 231 54 19 chr6 96033063 96034444 -86380798 - L1MC2 LINE L1 -1597 4549 3071 2169 74 84 0 chr6 96034444 96034728 -86380514 - AluY SINE Alu -3 308 1 6810 231 54 19 chr6 96034728 96035399 -86379843 - L1MC2 LINE L1 -3075 3071 2425 856 241 15 0 chr6 96036388 96036591 -86378651 + L1MD1 LINE L1 105 310 -6086 * 5934 212 53 61 chr6 96036589 96037834 -86377408 + L1MD1 LINE L1 2462 3716 -2499 372 22 0 0 chr6 96037834 96037879 -86377363 + (GA)n Simple_repeat Simple_repeat 2 46 0 5934 212 53 61 chr6 96037879 96037980 -86377262 + L1MD1 LINE L1 3716 3816 -2399 185 83 28 0 chr6 96037980 96038016 -86377226 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 5934 212 53 61 chr6 96038016 96038616 -86376626 + L1MD1 LINE L1 3816 4393 -1822 574 195 6 38 chr6 96038613 96038772 -86376470 + L1MD1 LINE L1 5175 5328 -887 * 3865 176 55 4 chr6 96038787 96039546 -86375696 + L1MD1 LINE L1 5511 6308 -3 4900 242 36 12 chr6 96039556 96039620 -86375622 + L1M4 LINE L1 2219 2280 -3866 2335 104 0 0 chr6 96039620 96039917 -86375325 + AluSx SINE Alu 1 297 -15 4900 242 36 12 chr6 96039917 96041309 -86373933 + L1M4 LINE L1 2280 3710 -2436 944 188 24 14 chr6 96041368 96041581 -86373661 + L1ME1 LINE L1 5718 5932 -234 355 218 82 36 chr6 96041687 96041797 -86373445 + L1ME1 LINE L1 5960 6074 -92 228 272 38 57 chr6 96041743 96041838 -86373404 + L1MA10 LINE L1 6180 6272 -62 * 4193 133 32 22 chr6 96041838 96042566 -86372676 - L1PB3 LINE L1 -4 6150 5416 228 272 38 57 chr6 96042566 96042628 -86372614 + L1MA10 LINE L1 6272 6334 0 464 277 50 31 chr6 96045956 96046115 -86369127 + MIR3 SINE MIR 40 201 -7 199 171 49 0 chr6 96048119 96048160 -86367082 + MIR SINE MIR 92 134 -128 6288 154 48 80 chr6 96048326 96049630 -86365612 - Looper DNA T2_type 0 1558 313 2338 79 7 0 chr6 96049630 96049922 -86365320 + AluY SINE Alu 1 294 -17 6288 154 48 80 chr6 96049922 96050219 -86365023 - Looper DNA T2_type -1245 313 8 1317 329 103 15 chr6 96050233 96050905 -86364337 - L3 LINE CR1 -480 1097 367 291 359 47 39 chr6 96050932 96051060 -86364182 - MIR3 SINE MIR -10 198 70 2170 120 7 0 chr6 96051317 96051617 -86363625 + AluSx SINE Alu 1 302 -10 325 314 88 30 chr6 96051764 96051964 -86363278 - MIR SINE MIR -33 229 17 308 234 16 0 chr6 96053281 96053345 -86361897 - MER5A DNA MER1_type -124 65 1 1080 170 36 9 chr6 96053563 96053786 -86361456 - L1MB3 LINE L1 -2 6181 5953 605 243 81 22 chr6 96054038 96054223 -86361019 - L2 LINE L2 -21 3292 3097 2270 93 3 7 chr6 96054451 96054761 -86360481 + AluSc SINE Alu 1 309 0 2333 83 0 0 chr6 96054836 96055125 -86360117 + AluSg SINE Alu 1 289 -21 546 230 196 0 chr6 96055248 96055396 -86359846 + MER5A DNA MER1_type 10 186 -3 296 82 0 61 chr6 96055813 96055853 -86359389 - MER103 DNA DNA 0 166 130 642 190 89 0 chr6 96055853 96056011 -86359231 - MER104 DNA Tc2 0 180 9 225 304 22 22 chr6 96056040 96056132 -86359110 - MER103 DNA DNA -72 94 3 1709 165 0 7 chr6 96057135 96057414 -86357828 + AluJb SINE Alu 19 295 -17 550 284 138 28 chr6 96057885 96058103 -86357139 - MIR SINE MIR -8 254 13 911 168 58 23 chr6 96058387 96058560 -86356682 - MER5A DNA MER1_type -10 179 1 828 147 8 47 chr6 96060049 96060195 -86355047 + MLT1C LTR MaLR 56 180 -210 273 29 0 0 chr6 96060195 96060229 -86355013 + (CA)n Simple_repeat Simple_repeat 1 34 0 828 147 8 47 chr6 96060229 96060278 -86354964 + MLT1C LTR MaLR 180 229 -161 * 1151 226 21 21 chr6 96060261 96060540 -86354702 + MLT1C LTR MaLR 187 465 -2 408 310 26 0 chr6 96061115 96061231 -86354011 + MIR3 SINE MIR 89 207 -1 742 171 0 8 chr6 96061433 96061550 -86353692 + FLAM_A SINE Alu 4 119 -14 973 266 19 10 chr6 96061570 96061882 -86353360 + L1ME2 LINE L1 4927 5241 -905 2020 228 53 34 chr6 96061888 96062475 -86352767 + L1ME2 LINE L1 5557 6154 -10 392 149 52 23 chr6 96063477 96063651 -86351591 + (TA)n Simple_repeat Simple_repeat 1 179 0 190 116 47 0 chr6 96063673 96063716 -86351526 + (TA)n Simple_repeat Simple_repeat 2 46 0 212 226 32 16 chr6 96063758 96063820 -86351422 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 334 232 20 13 chr6 96063873 96064024 -86351218 + (TA)n Simple_repeat Simple_repeat 2 153 0 432 111 41 47 chr6 96064092 96064263 -86350979 + (TA)n Simple_repeat Simple_repeat 2 171 0 21 36 0 0 chr6 96064567 96064595 -86350647 + AT_rich Low_complexity Low_complexity 1 28 0 255 242 9 0 chr6 96064595 96064686 -86350556 - L1MB2 LINE L1 0 6183 6078 217 239 30 8 chr6 96064738 96064872 -86350370 + (TA)n Simple_repeat Simple_repeat 2 138 0 254 333 0 0 chr6 96065570 96065648 -86349594 - MIR SINE MIR -1 261 184 6791 153 12 60 chr6 96066299 96067524 -86347718 - L1PA12 LINE L1 -5862 1719 554 6667 196 27 12 chr6 96067536 96071178 -86344064 - L1 LINE L1 -2622 3706 1 1070 294 27 22 chr6 96071262 96071663 -86343579 + MLT1I LTR MaLR 3 405 -4 491 174 18 28 chr6 96071717 96071826 -86343416 + MER103 DNA DNA 58 165 -1 292 346 161 36 chr6 96072595 96072959 -86342283 - L2 LINE L2 -5 3267 2849 2855 13 0 0 chr6 96072959 96073270 -86341972 + AluYb8 SINE Alu 1 311 -7 292 346 161 36 chr6 96073270 96073295 -86341947 - L2 LINE L2 -423 2849 2829 31 58 0 0 chr6 96073375 96073427 -86341815 + AT_rich Low_complexity Low_complexity 1 52 0 306 164 0 0 chr6 96075803 96075858 -86339384 + (CATA)n Simple_repeat Simple_repeat 1 55 0 957 218 26 17 chr6 96076163 96076397 -86338845 - MLT1J LTR MaLR -239 272 37 324 286 111 16 chr6 96076546 96076672 -86338570 + L2 LINE L2 3159 3296 -17 2106 71 0 15 chr6 96076677 96076944 -86338298 + AluY SINE Alu 32 294 -17 1898 117 73 0 chr6 96077099 96077372 -86337870 + AluSx SINE Alu 1 293 -19 308 308 99 17 chr6 96077520 96077692 -86337550 - MIR SINE MIR -70 192 7 23 0 0 0 chr6 96079667 96079690 -86335552 + AT_rich Low_complexity Low_complexity 1 23 0 340 317 111 11 chr6 96080753 96080933 -86334309 + MIR SINE MIR 65 262 0 2271 106 42 33 chr6 96081124 96081483 -86333759 + THE1B LTR MaLR 3 364 0 494 214 10 0 chr6 96081505 96081608 -86333634 + MER90 LTR ERV1 1 104 -471 833 249 14 5 chr6 96081620 96081841 -86333401 + MER90 LTR ERV1 225 447 -167 636 247 55 62 chr6 96081847 96082248 -86332994 - HAL1b LINE L1 -856 492 95 32 26 0 0 chr6 96083634 96083673 -86331569 + AT_rich Low_complexity Low_complexity 1 39 0 234 270 63 0 chr6 96083757 96083820 -86331422 - L2 LINE L2 0 3313 3247 4199 149 52 0 chr6 96088482 96089168 -86326074 + MER72 LTR ERV1 1 722 0 226 203 0 17 chr6 96090157 96090216 -86325026 - HsTC2 DNA Tc2 -1828 70 13 252 77 0 0 chr6 96090810 96090849 -86324393 + (TC)n Simple_repeat Simple_repeat 2 40 0 237 341 0 12 chr6 96091221 96091306 -86323936 + MER5B DNA MER1_type 89 172 -6 * 279 342 0 0 chr6 96091305 96091384 -86323858 - L3 LINE CR1 -37 1540 1462 367 278 23 107 chr6 96091629 96091789 -86323453 - L1ME1 LINE L1 -5 6161 6022 3783 152 107 33 chr6 96091789 96092557 -86322685 + LTR1B LTR ERV1 2 826 0 367 278 23 107 chr6 96092557 96092612 -86322630 - L1ME1 LINE L1 -144 6022 5964 1840 175 5 62 chr6 96092674 96092792 -86322450 + MER57A LTR ERV1 2 125 -278 2353 97 0 3 chr6 96092792 96093091 -86322151 - AluSq SINE Alu -15 298 1 1840 175 5 62 chr6 96093091 96093389 -86321853 + MER57A LTR ERV1 125 394 -9 654 268 10 43 chr6 96093404 96093703 -86321539 - L1MEc LINE L1 -2666 3549 3261 1221 202 23 35 chr6 96093749 96093808 -86321434 + L1M4 LINE L1 2729 2787 -3359 3596 80 43 129 chr6 96093808 96094475 -86320767 - LTR66 LTR ERVL 0 610 1 1221 202 23 35 chr6 96094475 96094811 -86320431 + L1M4 LINE L1 2787 3119 -3027 237 175 35 0 chr6 96094945 96095002 -86320240 - L1MEc LINE L1 -3430 2785 2727 * 530 242 0 0 chr6 96095000 96095124 -86320118 + L1M4 LINE L1 3727 3850 -2296 1919 262 80 41 chr6 96095125 96095855 -86319387 - L1MEc LINE L1 -3506 2709 2009 2270 120 0 0 chr6 96095855 96096155 -86319087 + AluSg SINE Alu 1 300 -10 1919 262 80 41 chr6 96096155 96096291 -86318951 - L1MEc LINE L1 -4206 2009 1880 2329 97 0 0 chr6 96096291 96096589 -86318653 - AluSq SINE Alu -15 298 1 1919 262 80 41 chr6 96096589 96097425 -86317817 - L1MEc LINE L1 -4335 1880 996 2594 142 22 16 chr6 96097461 96098057 -86317185 + MER4E LTR ERV1 1 779 0 580 360 81 34 chr6 96098171 96098260 -86316982 - L3 LINE CR1 -300 1277 1194 2327 88 0 3 chr6 96098260 96098565 -86316677 + AluY SINE Alu 1 304 -7 580 360 81 34 chr6 96098565 96098972 -86316270 - L3 LINE CR1 -383 1194 758 201 284 15 15 chr6 96099131 96099198 -86316044 + MIR SINE MIR 193 259 -3 1920 159 27 37 chr6 96099313 96099754 -86315488 - MER51B LTR ERV1 0 377 1 374 226 28 19 chr6 96100001 96100107 -86315135 + MLT1H1 LTR MaLR 4 110 -445 285 268 110 77 chr6 96100098 96100307 -86314935 + MLT1J LTR MaLR 296 511 0 * 697 108 0 0 chr6 96100566 96100659 -86314583 - AluY SINE Alu -25 286 194 2050 121 0 0 chr6 96101163 96101468 -86313774 + AluSx SINE Alu 1 305 0 669 305 68 14 chr6 96102237 96102483 -86312759 - MIR SINE MIR 0 262 2 1884 151 50 7 chr6 96102599 96102898 -86312344 + AluSx SINE Alu 1 312 0 2348 98 0 3 chr6 96102987 96103293 -86311949 + AluSq SINE Alu 1 305 -8 606 314 158 50 chr6 96103351 96104322 -86310920 - L2 LINE L2 -1 3271 2193 184 264 218 11 chr6 96104568 96104655 -86310587 + MER5B DNA MER1_type 15 119 -59 225 258 0 48 chr6 96104655 96104779 -86310463 + (TATG)n Simple_repeat Simple_repeat 4 121 0 270 0 0 0 chr6 96105496 96105526 -86309716 + (CA)n Simple_repeat Simple_repeat 2 31 0 1958 142 3 13 chr6 96105700 96106002 -86309240 + AluSx SINE Alu 1 299 -13 442 269 27 22 chr6 96106301 96106524 -86308718 + L1ME3A LINE L1 1380 1603 -4793 665 272 123 14 chr6 96106564 96106913 -86308329 + L1ME3A LINE L1 4976 5362 -853 261 108 31 15 chr6 96107056 96107121 -86308121 + (TA)n Simple_repeat Simple_repeat 2 67 0 1932 111 11 18 chr6 96107121 96107401 -86307841 - AluSg1 SINE Alu -31 278 1 997 303 26 20 chr6 96107506 96107853 -86307389 + LTR16C LTR ERVL 1 349 -142 399 342 105 21 chr6 96107910 96108328 -86306914 - L1MEd LINE L1 -5558 561 109 525 282 52 33 chr6 96108398 96108749 -86306493 + LTR16C LTR ERVL 87 474 -17 861 218 17 81 chr6 96108751 96109099 -86306143 + L1ME3A LINE L1 5649 5974 -265 743 264 85 3 chr6 96109903 96110115 -86305127 + MIR SINE MIR 19 241 -21 619 203 34 34 chr6 96110115 96110263 -86304979 - L2 LINE L2 -1 3312 3165 388 263 191 24 chr6 96111532 96111752 -86303490 - MIR SINE MIR -9 253 2 1820 145 47 10 chr6 96112259 96112556 -86302686 - AluSc SINE Alu -1 308 1 2269 83 0 0 chr6 96112589 96112920 -86302322 + AluY SINE Alu 1 311 0 212 180 20 20 chr6 96112943 96112993 -86302249 + (TG)n Simple_repeat Simple_repeat 1 50 0 1634 182 35 35 chr6 96113122 96113491 -86301751 - MLT1A2 LTR MaLR 0 374 6 182 242 32 48 chr6 96113973 96114035 -86301207 - MIR3 SINE MIR -1 207 147 261 135 0 0 chr6 96114762 96114814 -86300428 + (GA)n Simple_repeat Simple_repeat 2 53 0 959 197 6 6 chr6 96116302 96116480 -86298762 + MER45A DNA AcHobo 1 178 0 1635 196 3 23 chr6 96117062 96117363 -86297879 + AluJb SINE Alu 1 295 -17 749 227 179 10 chr6 96117803 96118010 -86297232 + MIR SINE MIR 20 261 -1 23 0 0 0 chr6 96120189 96120212 -86295030 + AT_rich Low_complexity Low_complexity 1 23 0 255 219 32 65 chr6 96120725 96120848 -86294394 + L1MEd LINE L1 654 772 -5347 25 31 0 0 chr6 96121003 96121035 -86294207 + AT_rich Low_complexity Low_complexity 1 32 0 326 309 67 101 chr6 96121056 96121301 -86293941 - L2 LINE L2 -16 3256 3023 3798 136 9 71 chr6 96121301 96122037 -86293205 + LTR8 LTR ERV1 1 691 0 326 309 67 101 chr6 96122037 96122118 -86293124 - L2 LINE L2 -249 3023 2941 681 314 53 8 chr6 96122242 96122487 -86292755 + MIR SINE MIR 7 262 0 393 248 124 31 chr6 96122567 96122696 -86292546 - L2 LINE L2 0 3313 3173 694 266 0 7 chr6 96122768 96122922 -86292320 + MER5A DNA MER1_type 37 189 0 2125 122 3 0 chr6 96123372 96123666 -86291576 + AluSc SINE Alu 1 295 -14 420 176 0 0 chr6 96123727 96123801 -86291441 - MER41B LTR ERV1 0 635 562 3174 134 13 9 chr6 96123814 96124359 -86290883 - LTR10A LTR ERV1 -62 547 1 2959 155 27 18 chr6 96124359 96124919 -86290323 - MER41B LTR ERV1 -70 565 1 2081 109 61 0 chr6 96125455 96125748 -86289494 + AluSx SINE Alu 1 311 -1 637 26 0 0 chr6 96125756 96125833 -86289409 - L1PA4 LINE L1 -172 5983 5907 669 26 0 0 chr6 96125833 96125952 -86289290 + L1PA4 LINE L1 6060 6183 0 2420 86 0 0 chr6 96126694 96126997 -86288245 - AluSc SINE Alu -6 303 1 541 227 190 6 chr6 96127033 96127196 -86288046 - MIR SINE MIR -56 206 14 1878 168 7 3 chr6 96128002 96128299 -86286943 + AluJb SINE Alu 12 309 -3 * 2152 145 7 0 chr6 96128298 96128608 -86286634 + AluSx SINE Alu 1 312 0 198 241 0 69 chr6 96129328 96129386 -86285856 + MIR SINE MIR 186 239 -23 2297 91 3 0 chr6 96130548 96130835 -86284407 + AluSg SINE Alu 1 288 -22 346 239 292 0 chr6 96135239 96135352 -86279890 + MIR SINE MIR 56 201 -61 189 296 0 0 chr6 96135412 96135456 -86279786 + L2 LINE L2 3262 3305 -8 357 328 8 16 chr6 96135869 96135991 -86279251 + MIR3 SINE MIR 1 121 -87 413 243 76 49 chr6 96136207 96136351 -86278891 + MIR SINE MIR 101 248 -14 237 237 105 92 chr6 96136456 96136608 -86278634 - MIR SINE MIR -41 221 68 2839 16 0 0 chr6 96137590 96137908 -86277334 + AluYb8 SINE Alu 1 318 0 2335 109 3 0 chr6 96144858 96145169 -86270073 - AluSx SINE Alu 0 312 1 325 305 43 124 chr6 96145664 96145774 -86269468 - L2 LINE L2 0 3272 3155 1946 98 16 75 chr6 96145774 96146079 -86269163 + AluSc SINE Alu 1 287 -22 325 305 43 124 chr6 96146079 96146250 -86268992 - L2 LINE L2 -117 3155 3014 241 353 47 26 chr6 96146375 96146565 -86268677 + L2 LINE L2 2550 2743 -571 352 276 143 112 chr6 96146792 96147238 -86268004 + L2 LINE L2 2809 3268 -4 359 287 174 14 chr6 96149000 96149415 -86265827 - L1MC4a LINE L1 -1633 6175 5695 565 216 130 22 chr6 96149796 96149981 -86265261 - MIR SINE MIR -10 252 48 407 176 0 0 chr6 96149986 96150054 -86265188 - MER3 DNA MER1_type -100 109 42 471 219 89 71 chr6 96150207 96150376 -86264866 + MIR SINE MIR 90 261 -1 23 54 0 0 chr6 96150416 96150453 -86264789 + AT_rich Low_complexity Low_complexity 1 37 0 548 252 72 12 chr6 96150570 96150777 -86264465 - MIR SINE MIR -10 252 28 1195 8 0 0 chr6 96150870 96151004 -86264238 + AluYa5/8 SINE Alu 173 306 -4 2101 137 0 3 chr6 96153337 96153643 -86261599 - AluSx SINE Alu -7 305 1 354 278 212 20 chr6 96154092 96154290 -86260952 - MIR SINE MIR -10 252 17 350 326 170 0 chr6 96155382 96155523 -86259719 + L2 LINE L2 3105 3269 -3 24 32 0 0 chr6 96156310 96156341 -86258901 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 96156708 96156738 -86258504 + AT_rich Low_complexity Low_complexity 1 30 0 251 359 89 58 chr6 96157095 96157250 -86257992 + L3b LINE CR1 1114 1263 -320 708 274 16 0 chr6 96157250 96157436 -86257806 + MER5A DNA MER1_type 1 189 0 251 359 89 58 chr6 96157436 96157729 -86257513 + L3b LINE CR1 1263 1576 -7 25 51 0 0 chr6 96158656 96158695 -86256547 + AT_rich Low_complexity Low_complexity 1 39 0 846 206 158 12 chr6 96158808 96159061 -86256181 + AluSx SINE Alu 1 290 -12 25 0 0 0 chr6 96159061 96159086 -86256156 + AT_rich Low_complexity Low_complexity 1 25 0 2337 113 0 0 chr6 96159186 96159496 -86255746 - AluSx SINE Alu 0 312 3 201 138 0 0 chr6 96164821 96164850 -86250392 + (GGGTG)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr6 96165247 96165268 -86249974 + GC_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr6 96165307 96165357 -86249885 + GC_rich Low_complexity Low_complexity 1 50 0 224 287 35 35 chr6 96169429 96169516 -86245726 + MIR SINE MIR 176 262 0 230 275 39 75 chr6 96170022 96170202 -86245040 + MIR3 SINE MIR 43 220 -31 1351 193 141 25 chr6 96170508 96170835 -86244407 + MLT1A1 LTR MaLR 1 365 0 205 269 0 15 chr6 96171443 96171510 -86243732 + GA-rich Low_complexity Low_complexity 1 66 0 30 27 0 0 chr6 96171787 96171824 -86243418 + AT_rich Low_complexity Low_complexity 1 37 0 939 238 67 76 chr6 96172368 96172709 -86242533 + MER20B DNA MER1_type 15 352 -431 372 194 129 50 chr6 96172835 96172944 -86242298 + MER20B DNA MER1_type 634 758 -25 2045 123 20 7 chr6 96172944 96173245 -86241997 + AluSq SINE Alu 1 305 -8 372 194 129 50 chr6 96173245 96173274 -86241968 + MER20B DNA MER1_type 758 783 0 385 308 75 0 chr6 96173852 96173972 -86241270 + L2 LINE L2 3185 3313 0 845 87 0 36 chr6 96174259 96174397 -86240845 + FLAM_C SINE Alu 1 133 0 2299 119 0 3 chr6 96174792 96175102 -86240140 + AluSx SINE Alu 1 309 -3 185 303 134 25 chr6 96176482 96176601 -86238641 - MIR3 SINE MIR -66 142 11 321 279 65 74 chr6 96177387 96177616 -86237626 + L1MEd LINE L1 965 1191 -4928 486 281 105 12 chr6 96177836 96178209 -86237033 - LTR33 LTR ERVL 0 521 73 343 234 11 21 chr6 96178581 96178675 -86236567 - MER34 LTR ERV1 -5 537 445 223 309 96 29 chr6 96179080 96179216 -86236026 - L2 LINE L2 -191 3081 2937 1091 221 52 67 chr6 96179700 96180100 -86235142 - MER39 LTR ERV1 -2 682 260 319 170 330 0 chr6 96180077 96180177 -86235065 - MER39 LTR ERV1 -574 133 1 * 1927 189 43 41 chr6 96180430 96180701 -86234541 + MER31B LTR ERV1 1 275 -191 1705 173 70 22 chr6 96180701 96181059 -86234183 + THE1C LTR MaLR 1 375 0 1927 189 43 41 chr6 96181059 96181252 -86233990 + MER31B LTR ERV1 275 466 0 2338 152 31 7 chr6 96182113 96182527 -86232715 + MSTA LTR MaLR 5 428 0 26 74 0 0 chr6 96184405 96184459 -86230783 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr6 96184667 96184695 -86230547 + AT_rich Low_complexity Low_complexity 1 28 0 3129 223 56 91 chr6 96184754 96185866 -86229376 + L1MC5 LINE L1 6628 7777 -184 219 36 0 0 chr6 96185866 96185894 -86229348 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2253 86 0 0 chr6 96185901 96186180 -86229062 - AluSg SINE Alu -31 279 1 3129 223 56 91 chr6 96186180 96186395 -86228847 + L1MC5 LINE L1 7783 7917 -44 23 0 0 0 chr6 96187002 96187025 -86228217 + AT_rich Low_complexity Low_complexity 1 23 0 203 326 58 0 chr6 96187026 96187112 -86228130 + L2 LINE L2 3223 3313 0 6238 163 15 13 chr6 96187264 96188685 -86226557 - L1MC1 LINE L1 -17 6316 4898 249 349 98 51 chr6 96189399 96189714 -86225528 - L2 LINE L2 0 3313 2984 * 306 385 31 21 chr6 96189699 96190024 -86225218 + L2 LINE L2 377 704 -2610 442 301 116 23 chr6 96190024 96190197 -86225045 + MER91B DNA MER1_type 2 190 0 853 357 43 16 chr6 96190197 96190687 -86224555 + L2 LINE L2 696 1198 -2116 373 372 68 11 chr6 96190694 96190885 -86224357 + L2 LINE L2 2823 3024 -289 599 259 121 34 chr6 96190898 96191137 -86224105 - MIR SINE MIR -2 260 1 369 321 53 15 chr6 96191275 96191406 -86223836 + L2 LINE L2 3136 3271 -1 758 270 165 13 chr6 96192735 96193050 -86222192 + LTR16C LTR ERVL 120 482 -9 2085 157 14 11 chr6 96193051 96193415 -86221827 + MLT1A1 LTR MaLR 1 365 0 210 136 34 17 chr6 96193554 96193613 -86221629 + CT-rich Low_complexity Low_complexity 2 61 0 624 131 22 28 chr6 96193867 96193996 -86221246 - L1MB8 LINE L1 -24 6154 6025 264 298 40 40 chr6 96194015 96194139 -86221103 - L2 LINE L2 -15 3257 3134 654 319 32 62 chr6 96194358 96194528 -86220714 - L2 LINE L2 -411 2903 2729 2440 71 0 10 chr6 96194528 96194837 -86220405 - AluSc SINE Alu -3 306 1 654 319 32 62 chr6 96194837 96195071 -86220171 - L2 LINE L2 -585 2729 2511 183 284 91 45 chr6 96196288 96196376 -86218866 - L2 LINE L2 -4 3268 3177 306 366 36 31 chr6 96196449 96196643 -86218599 - L2 LINE L2 -183 3089 2895 312 313 0 0 chr6 96198226 96198309 -86216933 + L2 LINE L2 3177 3259 -13 396 59 0 0 chr6 96198309 96198360 -86216882 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 607 244 15 0 chr6 96198459 96198590 -86216652 + MER94 DNA DNA 2 134 0 212 186 85 17 chr6 96198821 96198880 -86216362 + L2 LINE L2 3236 3298 -15 1410 102 17 34 chr6 96199388 96199624 -86215618 + L1MA3 LINE L1 3157 3388 -4177 1638 110 23 0 chr6 96199631 96199850 -86215392 + AluSg SINE Alu 1 224 -86 9185 130 24 3 chr6 96199952 96202405 -86212837 + L1MA3 LINE L1 5172 7682 -42 498 342 11 15 chr6 96203262 96203522 -86211720 + HAL1 LINE L1 1426 1684 -823 7207 126 48 3 chr6 96203706 96204882 -86210360 - Tigger3b DNA MER2_type 0 1231 4 229 271 96 88 chr6 96205620 96205860 -86209382 + MLT1K LTR MaLR 180 421 -167 274 157 98 0 chr6 96205936 96205987 -86209255 + MLT1K LTR MaLR 524 579 -9 2069 127 3 3 chr6 96206702 96207001 -86208241 - AluSx SINE Alu -13 299 1 25 31 0 0 chr6 96207746 96207778 -86207464 + AT_rich Low_complexity Low_complexity 1 32 0 1721 169 61 0 chr6 96208437 96208763 -86206479 + MER7A DNA MER2_type 3 346 0 344 139 69 0 chr6 96210575 96210647 -86204595 + MER116 DNA Mariner 1 77 -3 1114 287 20 25 chr6 96211146 96211554 -86203688 + MLT1I LTR MaLR 1 406 -3 273 75 0 0 chr6 96211880 96211920 -86203322 + (TC)n Simple_repeat Simple_repeat 2 41 0 336 48 0 0 chr6 96211920 96211962 -86203280 + (CA)n Simple_repeat Simple_repeat 1 42 0 2000 164 2 56 chr6 96213432 96213840 -86201402 - MLT1B LTR MaLR 0 390 5 979 213 15 0 chr6 96214014 96214216 -86201026 - MER3 DNA MER1_type -4 205 1 533 274 151 19 chr6 96214781 96214993 -86200249 + MIR SINE MIR 23 262 0 23 0 0 0 chr6 96215558 96215581 -86199661 + AT_rich Low_complexity Low_complexity 1 23 0 396 266 35 63 chr6 96216775 96216918 -86198324 - L2 LINE L2 0 3313 3175 291 304 13 0 chr6 96216939 96217018 -86198224 - MIR SINE MIR -109 153 74 26 0 0 0 chr6 96217629 96217655 -86197587 + AT_rich Low_complexity Low_complexity 1 26 0 2267 85 0 0 chr6 96218173 96218485 -86196757 - AluY SINE Alu 0 312 1 198 209 0 0 chr6 96218580 96218623 -86196619 + GA-rich Low_complexity Low_complexity 2 44 0 375 350 25 6 chr6 96219195 96219358 -86195884 + MIR SINE MIR 46 211 -51 2446 71 0 0 chr6 96219547 96219844 -86195398 - AluY SINE Alu -14 297 1 403 221 21 28 chr6 96219969 96220114 -86195128 + (TG)n Simple_repeat Simple_repeat 1 144 0 21 36 0 0 chr6 96220259 96220287 -86194955 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr6 96221410 96221439 -86193803 + (TG)n Simple_repeat Simple_repeat 2 30 0 740 157 0 0 chr6 96221555 96221670 -86193572 - FRAM SINE Alu -24 152 38 1246 259 88 33 chr6 96222433 96222806 -86192436 + MLT1J1 LTR MaLR 3 403 -43 1942 125 43 0 chr6 96222806 96223086 -86192156 - AluSx SINE Alu -15 297 6 1246 259 88 33 chr6 96223086 96223133 -86192109 + MLT1J1 LTR MaLR 403 446 0 1735 169 67 20 chr6 96223499 96223855 -86191387 - THE1C LTR MaLR -2 373 1 903 266 40 12 chr6 96224577 96224829 -86190413 - L1ME3A LINE L1 -5 6165 5907 367 262 42 9 chr6 96224830 96224955 -86190287 - L1ME3A LINE L1 -570 5600 5476 1976 268 108 17 chr6 96225190 96225854 -86189388 + L1MA8 LINE L1 466 1190 -6299 12258 179 27 31 chr6 96225890 96227312 -86187930 + L1MA8 LINE L1 2008 3433 -4277 946 225 0 0 chr6 96227312 96227485 -86187757 + FAM SINE Alu 1 173 -2 12258 179 27 31 chr6 96227485 96228639 -86186603 + L1MA8 LINE L1 3433 4589 -3121 1873 151 20 3 chr6 96228639 96228938 -86186304 + AluSx SINE Alu 1 304 -8 12258 179 27 31 chr6 96228938 96232093 -86183149 + L1MA8 LINE L1 4589 7710 0 443 275 48 66 chr6 96232106 96232561 -86182681 - L1MC5 LINE L1 -189 7772 7326 254 331 23 23 chr6 96232573 96232706 -86182536 - L1MC4a LINE L1 -445 7363 7231 186 333 0 0 chr6 96234296 96234350 -86180892 + L2 LINE L2 3214 3267 -5 559 171 38 0 chr6 96235790 96235895 -86179347 + Tigger5 DNA MER2_type 2215 2323 0 716 251 30 47 chr6 96235902 96236240 -86179002 + L1ME3A LINE L1 4942 5273 -873 1715 141 16 59 chr6 96236284 96236588 -86178654 + AluSx SINE Alu 1 291 -21 848 317 13 17 chr6 96236792 96236809 -86178433 + L1ME3A LINE L1 5354 5370 -800 1639 184 14 0 chr6 96236809 96237092 -86178150 + AluJb SINE Alu 6 292 -20 303 28 0 0 chr6 96237102 96237138 -86178104 + (TG)n Simple_repeat Simple_repeat 1 36 0 848 317 13 17 chr6 96237138 96237503 -86177739 + L1ME3A LINE L1 5379 5751 -419 336 27 41 41 chr6 96237506 96237579 -86177663 + (TA)n Simple_repeat Simple_repeat 2 74 0 2658 93 0 16 chr6 96237579 96237954 -86177288 - L1PA7 LINE L1 -16 6138 5770 10439 82 3 4 chr6 96237954 96239403 -86175839 - L1PA7 LINE L1 -830 5316 3870 338 268 89 26 chr6 96239401 96239591 -86175651 + L1ME3A LINE L1 5746 5947 -223 * 27 39 0 19 chr6 96239660 96239677 -86175565 + AT_rich Low_complexity Low_complexity 1 17 -34 2560 58 0 0 chr6 96239677 96239986 -86175256 - AluY SINE Alu -2 309 1 27 39 0 19 chr6 96239986 96240020 -86175222 + AT_rich Low_complexity Low_complexity 17 51 0 24 91 0 0 chr6 96240244 96240310 -86174932 + AT_rich Low_complexity Low_complexity 1 66 0 33 25 0 0 chr6 96240732 96240772 -86174470 + AT_rich Low_complexity Low_complexity 1 40 0 2222 110 0 0 chr6 96240969 96241270 -86173972 - AluSc SINE Alu -8 301 1 316 292 79 0 chr6 96242817 96242906 -86172336 + MIR SINE MIR 44 139 -123 1224 136 23 32 chr6 96242930 96243150 -86172092 - MER20 DNA MER1_type 0 219 2 513 293 51 19 chr6 96243165 96243380 -86171862 - MIR SINE MIR -30 232 11 568 247 28 28 chr6 96243733 96243911 -86171331 - MER5B DNA MER1_type 0 178 1 23 0 0 0 chr6 96244211 96244234 -86171008 + AT_rich Low_complexity Low_complexity 1 23 0 495 259 122 38 chr6 96244241 96244561 -86170681 + L1ME4a LINE L1 5742 6088 -33 1133 183 0 0 chr6 96244614 96244789 -86170453 + FAM SINE Alu 1 175 0 22 0 0 0 chr6 96246367 96246389 -86168853 + AT_rich Low_complexity Low_complexity 1 22 0 621 169 15 15 chr6 96247367 96247497 -86167745 + L1MC4 LINE L1 7732 7861 -181 429 128 21 11 chr6 96247513 96247607 -86167635 + (TA)n Simple_repeat Simple_repeat 2 96 0 347 240 93 8 chr6 96247639 96247768 -86167474 + L1MC4 LINE L1 7902 8041 -1 269 335 6 19 chr6 96248904 96249062 -86166180 + (TGAA)n Simple_repeat Simple_repeat 2 157 0 * 441 279 11 22 chr6 96248952 96249131 -86166111 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 331 257 143 0 chr6 96249469 96249574 -86165668 - L2 LINE L2 -5 3267 3148 2108 100 7 0 chr6 96249702 96250017 -86165225 - AluY SINE Alu 0 317 1 39990 72 6 9 chr6 96250265 96256415 -86158827 + L1PA6 LINE L1 11 6149 -5 342 254 176 18 chr6 96256828 96256993 -86158249 + MIR SINE MIR 6 196 -66 183 200 25 0 chr6 96257121 96257161 -86158081 + L2 LINE L2 3216 3256 -16 372 299 174 0 chr6 96257322 96257489 -86157753 - MER91A DNA MER1_type 0 196 1 21 0 0 0 chr6 96258596 96258617 -86156625 + AT_rich Low_complexity Low_complexity 1 21 0 278 296 68 62 chr6 96258819 96258995 -86156247 - MIR SINE MIR -66 196 20 222 265 0 0 chr6 96259829 96259878 -86155364 + L2 LINE L2 3265 3313 0 2393 79 0 0 chr6 96260791 96261081 -86154161 - AluSc SINE Alu -19 290 1 180 0 0 0 chr6 96263697 96263717 -86151525 + (TTTTTA)n Simple_repeat Simple_repeat 4 23 0 3414 48 0 0 chr6 96263717 96264136 -86151106 - L1PA5 LINE L1 0 6154 5736 383 336 64 0 chr6 96266191 96266316 -86148926 + MIR3 SINE MIR 12 144 -64 409 282 69 30 chr6 96266328 96266459 -86148783 - L2 LINE L2 0 3272 3137 444 282 21 65 chr6 96267252 96267592 -86147650 + L1MC/D LINE L1 5475 5791 -740 374 323 99 50 chr6 96268313 96268737 -86146505 - L2 LINE L2 -1048 2266 1822 199 242 65 16 chr6 96268977 96269039 -86146203 + L3 LINE CR1 1511 1575 -2 383 284 24 16 chr6 96269499 96269626 -86145616 + LTR67 LTR ERVL 417 544 -13 2541 54 0 6 chr6 96269660 96269973 -86145269 + AluY SINE Alu 1 311 0 471 274 144 0 chr6 96271341 96271494 -86143748 + MIR3 SINE MIR 19 193 -15 4367 240 84 16 chr6 96272919 96275189 -86140053 - L1M1 LINE L1 -4010 2200 1 428 162 0 0 chr6 96275188 96275256 -86139986 - L1MD3 LINE L1 -1011 6984 6917 * 26 50 0 0 chr6 96275309 96275349 -86139893 + AT_rich Low_complexity Low_complexity 1 40 0 464 317 33 11 chr6 96275400 96275580 -86139662 - L2 LINE L2 -900 2414 2231 278 185 37 49 chr6 96275604 96275685 -86139557 - L1ME4a LINE L1 -67 6054 5975 2364 93 0 10 chr6 96276550 96276861 -86138381 + AluSg SINE Alu 1 308 -2 21 36 0 0 chr6 96276917 96276945 -86138297 + AT_rich Low_complexity Low_complexity 1 28 0 1706 157 63 20 chr6 96277021 96277320 -86137922 + AluJb SINE Alu 1 312 0 2641 196 71 54 chr6 96278094 96279143 -86136099 + L1MDa LINE L1 1826 2903 -3637 440 282 104 52 chr6 96280381 96280403 -86134839 + L1MEd LINE L1 893 912 -1578 26 50 0 0 chr6 96280403 96280443 -86134799 + AT_rich Low_complexity Low_complexity 1 40 0 440 282 104 52 chr6 96280443 96280778 -86134464 + L1MEd LINE L1 912 1403 -1087 545 305 29 0 chr6 96280805 96281015 -86134227 + HAL1 LINE L1 1438 1653 -854 1661 129 21 0 chr6 96281090 96281331 -86133911 - AluSq SINE Alu -67 246 1 23 33 0 0 chr6 96281689 96281719 -86133523 + AT_rich Low_complexity Low_complexity 1 30 0 328 233 9 17 chr6 96281743 96281859 -86133383 + L1MEd LINE L1 2162 2276 -3853 3797 81 49 0 chr6 96282315 96282843 -86132399 - MER41A LTR ERV1 0 554 1 327 187 67 60 chr6 96285112 96285246 -86129996 - LTR19A LTR ERV1 -10 476 342 195 114 0 0 chr6 96286494 96286529 -86128713 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1206 60 11 22 chr6 96287872 96288054 -86127188 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2075 138 7 0 chr6 96288062 96288367 -86126875 - AluSq SINE Alu -6 307 1 264 286 43 29 chr6 96288407 96288547 -86126695 - L1MC/D LINE L1 -2088 5720 5579 21 57 0 0 chr6 96288701 96288736 -86126506 + AT_rich Low_complexity Low_complexity 1 35 0 355 263 117 17 chr6 96289306 96289546 -86125696 - L1MC/D LINE L1 -2250 5558 5295 225 0 0 0 chr6 96290246 96290271 -86124971 + (TG)n Simple_repeat Simple_repeat 2 26 0 822 326 94 15 chr6 96290459 96290935 -86124307 + MLT1L LTR MaLR 93 606 -9 280 229 16 0 chr6 96291110 96291171 -86124071 + MIR SINE MIR 65 126 -136 1009 136 0 0 chr6 96291183 96291330 -86123912 + AluSg/x SINE Alu 137 283 -27 351 0 0 0 chr6 96291330 96291369 -86123873 + (CA)n Simple_repeat Simple_repeat 2 40 0 1711 202 111 24 chr6 96291379 96291873 -86123369 - HsTC2c DNA Tc2 -2 727 191 1112 276 127 16 chr6 96292941 96293643 -86121599 - L2 LINE L2 -1 3312 2440 259 211 67 11 chr6 96293674 96293764 -86121478 - L1ME4a LINE L1 -6 6115 6021 1026 100 0 0 chr6 96293828 96294008 -86121234 + (TA)n Simple_repeat Simple_repeat 1 180 0 2159 122 53 64 chr6 96294460 96294929 -86120313 - MLT1C LTR MaLR -3 464 1 337 268 158 31 chr6 96297073 96297200 -86118042 + MIR SINE MIR 7 145 -63 288 243 149 9 chr6 96298887 96298994 -86116248 - MLT1L LTR MaLR -71 544 423 285 264 121 71 chr6 96299114 96299353 -86115889 - MLT1L LTR MaLR -364 251 1 324 304 138 24 chr6 96299406 96299695 -86115547 + LTR33 LTR ERVL 192 513 -8 222 208 0 0 chr6 96299799 96299847 -86115395 + (TA)n Simple_repeat Simple_repeat 1 48 0 934 264 45 25 chr6 96299886 96300624 -86114618 - L1MC4a LINE L1 -452 6112 5545 1369 255 80 5 chr6 96300767 96301206 -86114036 - L1MD2 LINE L1 -221 6138 5667 * 1924 229 89 11 chr6 96301205 96301924 -86113318 - L1MC4a LINE L1 -976 5564 4790 4792 220 58 39 chr6 96301955 96303179 -86112063 - L1MDa LINE L1 -2274 4266 3067 198 0 0 0 chr6 96303179 96303201 -86112041 + (TG)n Simple_repeat Simple_repeat 1 22 0 1848 146 41 0 chr6 96303201 96303469 -86111773 - AluSx SINE Alu -33 279 1 4792 220 58 39 chr6 96303469 96304109 -86111133 - L1MDa LINE L1 -3473 3067 2351 1533 211 29 32 chr6 96304109 96304484 -86110758 + MLT1A2 LTR MaLR 1 374 0 4792 220 58 39 chr6 96304484 96304613 -86110629 - L1MDa LINE L1 -4189 2351 2226 272 196 0 18 chr6 96305013 96305069 -86110173 + MLT1K LTR MaLR 188 242 -346 1142 176 9 5 chr6 96305204 96305414 -86109828 + MLT1A1 LTR MaLR 155 365 0 4870 161 41 95 chr6 96306411 96307837 -86107405 - MER52A LTR ERV1 0 1755 308 270 291 112 30 chr6 96308365 96308499 -86106743 + MIR SINE MIR 4 148 -114 195 271 12 71 chr6 96308623 96308708 -86106534 - L2 LINE L2 0 3313 3234 270 81 0 0 chr6 96309890 96309927 -86105315 + (CAT)n Simple_repeat Simple_repeat 3 39 0 212 247 82 14 chr6 96309930 96310003 -86105239 - L2 LINE L2 -11 3261 3184 729 205 6 12 chr6 96310312 96310478 -86104764 - L1PB4 LINE L1 -1 6155 5991 327 96 0 0 chr6 96310685 96310737 -86104505 + (TC)n Simple_repeat Simple_repeat 1 52 0 575 282 23 88 chr6 96311116 96311421 -86103821 + L2 LINE L2 3029 3313 0 327 281 92 0 chr6 96311590 96311743 -86103499 - L1ME4a LINE L1 -201 5920 5754 1976 125 7 0 chr6 96311755 96312065 -86103177 - AluSq SINE Alu 0 314 3 1779 184 43 30 chr6 96312254 96312790 -86102452 + MLT2A2 LTR ERVL 6 554 0 445 304 56 0 chr6 96313284 96313534 -86101708 - L1ME4a LINE L1 -381 5740 5477 7576 24 4 4 chr6 96313798 96315353 -86099889 + L1PA3 LINE L1 4601 6155 0 1475 169 67 11 chr6 96315378 96315645 -86099597 + AluJo SINE Alu 1 282 -30 1796 158 16 35 chr6 96315738 96316054 -86099188 - AluJb SINE Alu -2 310 1 22 56 0 0 chr6 96316970 96317006 -86098236 + AT_rich Low_complexity Low_complexity 1 36 0 468 341 158 23 chr6 96320072 96320602 -86094640 + L1 LINE L1 3220 3821 -2325 553 331 165 31 chr6 96321088 96321770 -86093472 + L2 LINE L2 1419 2219 -1095 975 189 189 0 chr6 96321770 96322040 -86093202 + MER33 DNA MER1_type 1 321 -3 553 331 165 31 chr6 96322040 96322133 -86093109 + L2 LINE L2 2219 2298 -1016 324 236 122 0 chr6 96322158 96322281 -86092961 + LTR50 LTR ERVL 1 138 -657 615 216 153 30 chr6 96322386 96322687 -86092555 + LTR50 LTR ERVL 458 795 0 426 350 145 16 chr6 96322698 96323064 -86092178 + L2 LINE L2 2333 2745 -569 195 299 58 11 chr6 96323058 96323145 -86092097 + L2 LINE L2 2953 3043 -229 * 351 0 0 0 chr6 96323182 96323221 -86092021 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 348 335 99 12 chr6 96323330 96323572 -86091670 + L1ME4a LINE L1 3700 3962 -2184 658 189 39 0 chr6 96324186 96324313 -86090929 + FLAM_A SINE Alu 1 132 -1 1456 161 34 4 chr6 96324313 96324574 -86090668 + L1PB4 LINE L1 5886 6154 -2 44 56 0 0 chr6 96324574 96324646 -86090596 + AT_rich Low_complexity Low_complexity 1 72 0 1277 113 6 0 chr6 96324857 96325034 -86090208 + AluY SINE Alu 128 305 -6 395 313 129 17 chr6 96325101 96325537 -86089705 + L1ME4a LINE L1 5122 5603 -518 2088 113 6 34 chr6 96325858 96326178 -86089064 + AluSq SINE Alu 1 311 -2 286 254 18 26 chr6 96326493 96326607 -86088635 + L1ME4a LINE L1 5936 6048 -73 1795 162 53 109 chr6 96326860 96327311 -86087931 - MSTB LTR MaLR 0 426 1 6240 128 17 33 chr6 96327428 96327547 -86087695 + L1MA3 LINE L1 4542 4661 -1644 1990 126 39 0 chr6 96327547 96327833 -86087409 + AluSx SINE Alu 1 297 -15 6240 128 17 33 chr6 96327833 96328528 -86086714 + L1MA3 LINE L1 4661 5366 -939 1365 157 120 22 chr6 96328528 96328795 -86086447 + AluJb SINE Alu 3 295 -17 6240 128 17 33 chr6 96328795 96329751 -86085491 + L1MA3 LINE L1 5366 6302 -3 777 229 154 51 chr6 96330029 96330429 -86084813 + L1MC5 LINE L1 7180 7684 -277 22 56 0 0 chr6 96330429 96330465 -86084777 + AT_rich Low_complexity Low_complexity 1 36 0 777 229 154 51 chr6 96330465 96330575 -86084667 + L1MC5 LINE L1 7684 7781 -180 6390 0 0 0 chr6 96330496 96330572 -86084670 + L1MC5 LINE L1 2521 2642 -5319 23518 34 0 0 chr6 96330572 96334203 -86081039 + L1PA3 LINE L1 2521 6149 -6 6390 0 0 0 chr6 96334203 96334365 -86080877 + L1MC5 LINE L1 2642 7913 -48 24 77 0 0 chr6 96334490 96334542 -86080700 + AT_rich Low_complexity Low_complexity 1 52 0 27 0 0 0 chr6 96335269 96335296 -86079946 + AT_rich Low_complexity Low_complexity 1 27 0 183 80 0 0 chr6 96335832 96335857 -86079385 + (TG)n Simple_repeat Simple_repeat 2 26 0 305 325 26 18 chr6 96336882 96336996 -86078246 - MIR SINE MIR -76 132 18 611 241 38 0 chr6 96337549 96337682 -86077560 + MIR SINE MIR 124 261 -1 555 278 74 48 chr6 96337697 96337927 -86077315 - L2 LINE L2 -37 3235 3000 753 343 92 38 chr6 96337946 96338789 -86076453 - L2 LINE L2 -556 2758 1870 210 192 0 0 chr6 96338832 96338884 -86076358 + (TG)n Simple_repeat Simple_repeat 1 52 0 3034 208 91 26 chr6 96339473 96340340 -86074902 - L1MD1 LINE L1 -11 6231 5296 279 0 0 0 chr6 96340340 96340371 -86074871 + (TG)n Simple_repeat Simple_repeat 2 32 0 3034 208 91 26 chr6 96340371 96340588 -86074654 - L1MD1 LINE L1 -946 5296 5095 586 157 14 134 chr6 96340675 96340723 -86074519 + L1MC5 LINE L1 7744 7796 -165 2706 108 28 21 chr6 96340723 96341148 -86074094 - MSTA LTR MaLR 0 428 1 586 157 14 134 chr6 96341148 96341316 -86073926 + L1MC5 LINE L1 7796 7934 -27 323 280 18 64 chr6 96341319 96341537 -86073705 + L1ME LINE L1 5610 5817 -304 8118 106 16 42 chr6 96342027 96343358 -86071884 - HSMAR2 DNA Mariner -1 1301 5 2470 189 97 0 chr6 96343505 96344019 -86071223 + MLT1F1 LTR MaLR 1 564 -3 182 309 32 43 chr6 96345377 96345471 -86069771 + L3 LINE CR1 612 704 -873 32298 35 1 200 chr6 96345677 96353408 -86061834 + L1PA3 LINE L1 1 6155 0 21 0 0 0 chr6 96354371 96354392 -86060850 + AT_rich Low_complexity Low_complexity 1 21 0 675 283 56 34 chr6 96354667 96354900 -86060342 + MIR SINE MIR 15 252 -10 233 329 24 24 chr6 96355013 96355095 -86060147 + L3 LINE CR1 1490 1571 -6 194 184 48 19 chr6 96355633 96355736 -86059506 + CT-rich Low_complexity Low_complexity 1 106 0 261 273 0 13 chr6 96355999 96356076 -86059166 - MIR SINE MIR 0 262 187 584 299 86 18 chr6 96356112 96356333 -86058909 - MIR SINE MIR -25 237 2 232 295 107 9 chr6 96356868 96356980 -86058262 + L1ME LINE L1 5503 5595 -526 1081 194 86 68 chr6 96357356 96357692 -86057550 + MER2 DNA MER2_type 2 343 -1 975 216 143 14 chr6 96357937 96358294 -86056948 - HAL1 LINE L1 -631 1876 1474 376 298 89 27 chr6 96358702 96358898 -86056344 + MIR SINE MIR 16 221 -41 26 0 0 0 chr6 96359402 96359428 -86055814 + AT_rich Low_complexity Low_complexity 1 26 0 591 227 0 8 chr6 96359799 96359918 -86055324 - L2 LINE L2 -5 3308 3191 516 296 11 12 chr6 96361033 96361194 -86054048 - MIR3 SINE MIR -1 207 46 222 91 0 0 chr6 96361760 96361793 -86053449 + (TG)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr6 96361926 96361948 -86053294 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 96362826 96362849 -86052393 + AT_rich Low_complexity Low_complexity 1 23 0 252 183 86 86 chr6 96363223 96363316 -86051926 - MER103 DNA DNA -71 95 3 818 322 84 26 chr6 96363484 96363910 -86051332 - L3 LINE CR1 -127 1450 1000 326 229 229 0 chr6 96363921 96364039 -86051203 - LTR16A LTR ERVL -5 445 301 406 276 9 0 chr6 96364173 96364289 -86050953 - LTR16A LTR ERVL -316 134 18 1263 292 75 43 chr6 96364306 96365170 -86050072 - L2 LINE L2 -498 2816 1925 636 259 174 25 chr6 96365405 96365768 -86049474 - MLT1D LTR MaLR 0 505 89 694 230 59 8 chr6 96365770 96366046 -86049196 - MLT1-int LTR MaLR -964 407 1 212 268 36 0 chr6 96366981 96367037 -86048205 - L3 LINE CR1 -615 962 905 1223 235 124 13 chr6 96367416 96367811 -86047431 + LTR40b LTR ERVL 22 460 -2 241 318 72 23 chr6 96368418 96368550 -86046692 + MIR SINE MIR 36 173 -60 739 266 91 65 chr6 96368556 96368743 -86046499 - L2 LINE L2 -1 3312 3132 2240 108 0 37 chr6 96368743 96369067 -86046175 + AluSx SINE Alu 1 312 0 739 266 91 65 chr6 96369067 96369251 -86045991 - L2 LINE L2 -181 3132 2931 208 147 0 0 chr6 96369341 96369375 -86045867 + (T)n Simple_repeat Simple_repeat 1 34 0 2039 143 0 7 chr6 96370662 96370963 -86044279 - AluSx SINE Alu -13 299 1 225 0 0 0 chr6 96373858 96373883 -86041359 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 214 339 0 15 chr6 96375918 96375983 -86039259 + MIR3 SINE MIR 3 66 -142 8334 54 1 0 chr6 96376450 96377415 -86037827 + LTR5 LTR ERVK 1 966 -3 325 295 90 16 chr6 96377845 96377967 -86037275 - L2 LINE L2 -6 3266 3136 213 307 171 18 chr6 96378125 96378353 -86036889 - L2 LINE L2 -366 2948 2686 531 272 147 16 chr6 96378540 96378853 -86036389 + MLT1K LTR MaLR 235 588 0 613 322 76 31 chr6 96378855 96379305 -86035937 - L2 LINE L2 -667 2647 2178 1987 192 63 36 chr6 96380891 96381410 -86033832 - MER41B LTR ERV1 0 601 108 207 297 14 0 chr6 96381849 96381923 -86033319 + (TAA)n Simple_repeat Simple_repeat 3 77 0 346 311 0 0 chr6 96381964 96382054 -86033188 - MIR SINE MIR -109 153 64 1054 170 22 11 chr6 96382114 96382296 -86032946 - MER5A DNA MER1_type -3 186 3 21 0 0 0 chr6 96382301 96382322 -86032920 + AT_rich Low_complexity Low_complexity 1 21 0 2130 264 72 32 chr6 96383011 96384685 -86030557 - L1ME3A LINE L1 -10 6396 4618 4811 50 40 0 chr6 96384685 96385289 -86029953 + L1PA5 LINE L1 5526 6153 -1 2130 264 72 32 chr6 96385289 96385588 -86029654 - L1ME3A LINE L1 -1788 4618 4332 36060 87 7 8 chr6 96385590 96391739 -86023503 + L1PA6 LINE L1 11 6154 0 1250 286 108 21 chr6 96391705 96392519 -86022723 - L1ME3A LINE L1 -2011 4371 3487 * 22 35 0 0 chr6 96392771 96392800 -86022442 + AT_rich Low_complexity Low_complexity 1 29 0 760 267 26 45 chr6 96392956 96393424 -86021818 - L1ME3A LINE L1 -2978 3404 2946 981 274 66 58 chr6 96393431 96393620 -86021622 - L1ME3A LINE L1 -4027 2536 2350 1977 174 0 0 chr6 96393620 96393919 -86021323 - AluSx SINE Alu -13 299 1 981 274 66 58 chr6 96393919 96394226 -86021016 - L1ME3A LINE L1 -4213 2350 2036 371 277 21 37 chr6 96394505 96394693 -86020549 - L1ME3A LINE L1 -4905 1479 1295 258 32 0 0 chr6 96394696 96394727 -86020515 + (TC)n Simple_repeat Simple_repeat 1 31 0 379 260 80 54 chr6 96394776 96394966 -86020276 - L1MDa LINE L1 -5145 1237 978 450 36 0 0 chr6 96395338 96395394 -86019848 + (CA)n Simple_repeat Simple_repeat 1 56 0 915 293 56 20 chr6 96396200 96396555 -86018687 + LTR16B LTR ERVL 97 464 0 888 199 27 16 chr6 96396831 96397017 -86018225 - AluJo SINE Alu -5 307 120 332 301 77 58 chr6 96398725 96399090 -86016152 - MLT1K LTR MaLR -2 586 215 344 307 40 0 chr6 96399300 96399401 -86015841 + MIR3 SINE MIR 91 195 -13 262 268 58 14 chr6 96400517 96400655 -86014587 + HAL1 LINE L1 1255 1398 -1109 27 96 0 0 chr6 96401014 96401097 -86014145 + AT_rich Low_complexity Low_complexity 1 83 0 273 152 61 0 chr6 96401159 96401225 -86014017 + L1ME1 LINE L1 6096 6165 -1 232 302 28 0 chr6 96401227 96401333 -86013909 + (CATATA)n Simple_repeat Simple_repeat 3 111 0 40100 39 22 3 chr6 96401361 96407393 -86007849 + L1PA3 LINE L1 5 6155 0 1596 256 21 33 chr6 96407493 96408192 -86007050 + L1ME3A LINE L1 3918 4608 -1538 396 125 0 0 chr6 96408201 96408265 -86006977 + (TGG)n Simple_repeat Simple_repeat 1 64 0 393 278 135 8 chr6 96408277 96408529 -86006713 + L1ME3A LINE L1 4626 4909 -1237 832 206 12 12 chr6 96408677 96408842 -86006400 - FRAM SINE Alu -14 162 1 204 40 0 0 chr6 96409029 96409054 -86006188 + (T)n Simple_repeat Simple_repeat 1 25 0 2228 62 34 31 chr6 96409054 96409379 -86005863 - LTR17 LTR ERV1 -454 326 1 2261 62 3 0 chr6 96409379 96409670 -86005572 - HERV17 LTR ERV1 0 8626 8335 261 103 0 0 chr6 96409660 96409699 -86005543 - HERV17 LTR ERV1 -1078 7548 7510 * 33872 49 8 4 chr6 96409689 96414018 -86001224 - HERV17 LTR ERV1 -2604 6022 1678 13204 57 36 13 chr6 96414014 96415836 -85999406 - HERV17 LTR ERV1 -6763 1863 1 * 3948 51 4 19 chr6 96415836 96416368 -85998874 - LTR17 LTR ERV1 0 780 257 1836 248 82 31 chr6 96416368 96417202 -85998040 + L1ME3A LINE L1 5261 6136 -34 2416 86 0 0 chr6 96417232 96417534 -85997708 + AluY SINE Alu 1 302 -9 2041 110 7 26 chr6 96417849 96418158 -85997084 - AluSx SINE Alu -9 303 1 182 226 57 94 chr6 96418338 96418444 -85996798 - MIR SINE MIR -70 192 91 25 0 0 0 chr6 96418649 96418674 -85996568 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 96418760 96418790 -85996452 + AT_rich Low_complexity Low_complexity 1 30 0 451 329 122 14 chr6 96419114 96419244 -85995998 + L1M4 LINE L1 2149 2264 -3882 2121 144 76 29 chr6 96419244 96419653 -85995589 + MSTA LTR MaLR 1 428 0 451 329 122 14 chr6 96419653 96420012 -85995230 + L1M4 LINE L1 2264 2691 -3455 916 135 30 35 chr6 96420018 96420218 -85995024 - L1MA7 LINE L1 0 6291 6093 25 0 0 0 chr6 96421881 96421906 -85993336 + AT_rich Low_complexity Low_complexity 1 25 0 1922 212 20 22 chr6 96422585 96423095 -85992147 - L1ME1 LINE L1 -3 6399 5891 657 219 37 14 chr6 96423095 96423310 -85991932 - L1ME1 LINE L1 -1290 5092 4873 1003 254 14 44 chr6 96423315 96423718 -85991524 - MLT2C1 LTR ERVL -5 658 8 584 228 67 6 chr6 96423726 96423906 -85991336 - L1ME1 LINE L1 -1501 4881 4691 3176 252 83 12 chr6 96423907 96425296 -85989946 - L1ME1 LINE L1 -2636 3746 2260 3571 221 49 33 chr6 96425314 96426588 -85988654 + L1MD2 LINE L1 5056 6346 -13 25834 30 0 0 chr6 96428167 96432070 -85983172 + L1PA3 LINE L1 2255 6155 0 1688 179 51 62 chr6 96432588 96433057 -85982185 + MLT1C LTR MaLR 1 464 -3 28 48 0 0 chr6 96433109 96433151 -85982091 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr6 96433495 96433531 -85981711 + AT_rich Low_complexity Low_complexity 1 36 0 1331 171 28 25 chr6 96433624 96433747 -85981495 - MER33 DNA MER1_type -2262 323 202 3585 172 79 12 chr6 96433747 96434433 -85980809 + MER44D DNA MER2_type 2 605 0 1331 171 28 25 chr6 96434433 96434631 -85980611 - MER33 DNA MER1_type -2383 202 1 2026 135 6 19 chr6 96434768 96435079 -85980163 + AluSq SINE Alu 1 307 -6 2519 148 20 4 chr6 96435491 96435949 -85979293 + L1MB3 LINE L1 5719 6183 0 238 226 43 32 chr6 96437283 96437376 -85977866 - L1ME4a LINE L1 -43 6078 5985 2669 215 31 58 chr6 96437432 96437461 -85977781 - L1ME2 LINE L1 -3 6161 6133 1326 240 100 61 chr6 96437461 96437982 -85977260 - MLT1F LTR MaLR -1 541 1 2669 215 31 58 chr6 96437982 96439397 -85975845 - L1ME2 LINE L1 -31 6133 4734 731 276 82 11 chr6 96439398 96439750 -85975492 - L1ME4a LINE L1 -227 5894 5518 25 0 0 0 chr6 96440026 96440051 -85975191 + AT_rich Low_complexity Low_complexity 1 25 0 222 272 54 33 chr6 96441027 96441119 -85974123 - MIR SINE MIR -101 161 68 2000 164 3 0 chr6 96442361 96442710 -85972532 - AluSx SINE Alu 0 350 1 3188 165 22 26 chr6 96442733 96443257 -85971985 + L1MB4 LINE L1 5157 5680 -491 7783 19 0 0 chr6 96443257 96444387 -85970855 - L1PA2 LINE L1 0 6155 5026 3188 165 22 26 chr6 96444387 96444629 -85970613 + L1MB4 LINE L1 5680 5921 -250 424 118 13 0 chr6 96444681 96444757 -85970485 - L1MB3 LINE L1 -214 5969 5893 940 182 39 5 chr6 96444807 96445010 -85970232 + L1MB4 LINE L1 5970 6179 -1 26 0 0 0 chr6 96445010 96445036 -85970206 + AT_rich Low_complexity Low_complexity 1 26 0 590 267 292 14 chr6 96445362 96445729 -85969513 - L2 LINE L2 -19 3294 2826 332 246 81 17 chr6 96447067 96447329 -85967913 - L1ME4a LINE L1 -626 5543 5264 320 289 109 18 chr6 96447525 96447964 -85967278 - L1ME4a LINE L1 -3457 2689 2211 33 25 0 0 chr6 96447982 96448022 -85967220 + AT_rich Low_complexity Low_complexity 1 40 0 4771 103 56 31 chr6 96448269 96449103 -85966139 + L1PB3 LINE L1 5299 6153 -1 237 274 62 9 chr6 96450948 96451061 -85964181 + L1ME4a LINE L1 5999 6117 -4 23 0 0 0 chr6 96451428 96451451 -85963791 + AT_rich Low_complexity Low_complexity 1 23 0 313 370 105 12 chr6 96451565 96451727 -85963515 - L2 LINE L2 0 3272 3096 1907 133 0 4 chr6 96452411 96452681 -85962561 + AluSx SINE Alu 1 269 -43 358 265 29 20 chr6 96454627 96454729 -85960513 - L2 LINE L2 -2 3270 3168 23 68 0 0 chr6 96455160 96455204 -85960038 + AT_rich Low_complexity Low_complexity 1 44 0 1739 118 98 9 chr6 96455239 96455586 -85959656 - L1MA8 LINE L1 0 6291 5914 449 221 10 0 chr6 96455591 96455695 -85959547 - L1ME1 LINE L1 -41 6125 6021 1402 293 78 65 chr6 96455729 96456973 -85958269 + HAL1 LINE L1 1 1312 -1195 3570 113 2 9 chr6 96456973 96457505 -85957737 + L1PA16 LINE L1 5630 6157 -9 1402 293 78 65 chr6 96457505 96458038 -85957204 + HAL1 LINE L1 1312 1836 -671 250 320 0 0 chr6 96458295 96458373 -85956869 + (TG)n Simple_repeat Simple_repeat 1 78 0 245 75 25 0 chr6 96458946 96458986 -85956256 + (TTTC)n Simple_repeat Simple_repeat 1 41 0 202 233 60 9 chr6 96459365 96459481 -85955761 + (TATAA)n Simple_repeat Simple_repeat 2 123 0 463 286 54 43 chr6 96459628 96459813 -85955429 + MIR3 SINE MIR 15 201 -7 1314 222 75 83 chr6 96459858 96460426 -85954816 - MLT1F1 LTR MaLR -4 563 1 225 311 58 29 chr6 96460492 96460595 -85954647 - L2 LINE L2 -1 3312 3207 1913 104 48 0 chr6 96460958 96461277 -85953965 - AluSx SINE Alu 0 332 1 190 320 39 39 chr6 96461483 96461561 -85953681 - L2 LINE L2 -173 3099 3022 225 0 0 0 chr6 96461754 96461779 -85953463 + (T)n Simple_repeat Simple_repeat 1 25 0 591 185 79 85 chr6 96461939 96462128 -85953114 + MLT1C LTR MaLR 5 192 -275 606 235 128 6 chr6 96462183 96462362 -85952880 + MER21B LTR ERV1 12 212 -651 2441 145 36 0 chr6 96462363 96462776 -85952466 + MSTA LTR MaLR 1 428 0 8560 155 9 60 chr6 96462776 96464516 -85950726 + MSTA-int LTR MaLR 1 1651 0 2404 153 21 12 chr6 96464516 96464940 -85950302 + MSTA LTR MaLR 1 428 0 1995 219 114 30 chr6 96464940 96465534 -85949708 + MER21B LTR ERV1 209 852 -11 621 216 82 12 chr6 96465555 96465726 -85949516 + MLT1C LTR MaLR 255 437 -30 303 270 176 25 chr6 96465746 96465905 -85949337 + MIR SINE MIR 74 256 -6 3690 73 2 2 chr6 96465908 96466390 -85948852 + L1PA6 LINE L1 5666 6147 -7 2240 105 0 7 chr6 96466790 96467084 -85948158 + AluSg SINE Alu 1 292 -18 30 0 0 0 chr6 96467107 96467137 -85948105 + AT_rich Low_complexity Low_complexity 1 30 0 1503 161 24 40 chr6 96467148 96467477 -85947765 + MER33 DNA MER1_type 1 324 0 226 274 32 0 chr6 96468024 96468086 -85947156 + CT-rich Low_complexity Low_complexity 3 66 0 185 140 70 0 chr6 96468419 96468476 -85946766 + CT-rich Low_complexity Low_complexity 1 61 0 216 273 136 62 chr6 96468489 96468731 -85946511 - L3b LINE CR1 -144 1439 1180 363 297 65 82 chr6 96469916 96470222 -85945020 - HAL1 LINE L1 -1411 1096 796 2500 72 0 0 chr6 96470885 96471190 -85944052 + AluY SINE Alu 1 305 -6 406 329 34 7 chr6 96471366 96471512 -85943730 + MIR SINE MIR 21 170 -92 25 51 0 0 chr6 96472165 96472204 -85943038 + AT_rich Low_complexity Low_complexity 1 39 0 1385 185 82 84 chr6 96472455 96472901 -85942341 - MER66A LTR ERV1 0 478 97 438 202 78 23 chr6 96474875 96475004 -85940238 + L1ME4a LINE L1 5982 6117 -4 183 283 33 0 chr6 96475133 96475193 -85940049 + L2 LINE L2 1848 1909 -1405 559 224 118 88 chr6 96475275 96475615 -85939627 - MLT1D LTR MaLR -124 381 32 388 302 117 25 chr6 96478591 96478985 -85936257 + L1ME LINE L1 65 494 -5929 1299 208 136 81 chr6 96479175 96479920 -85935322 + L1ME LINE L1 814 1599 -4897 610 282 24 21 chr6 96479921 96480254 -85934988 + L1ME LINE L1 1717 2050 -4891 429 126 69 23 chr6 96480238 96480325 -85934917 + L1ME1 LINE L1 5422 5512 -730 * 1453 270 65 2 chr6 96480356 96480848 -85934394 + L1ME1 LINE L1 5626 6148 -18 1283 289 50 23 chr6 96481863 96482250 -85932992 + LTR16C LTR ERVL 36 438 -53 2143 128 3 0 chr6 96482250 96482554 -85932688 + AluSx SINE Alu 1 305 -7 1283 289 50 23 chr6 96482554 96482609 -85932633 + LTR16C LTR ERVL 438 490 -1 1979 121 43 0 chr6 96483065 96483346 -85931896 + AluSx SINE Alu 1 293 -19 2879 243 77 105 chr6 96483503 96484069 -85931173 - L1MEc LINE L1 -4785 1611 1031 625 161 98 9 chr6 96484069 96484181 -85931061 + AluSp/q SINE Alu 170 291 -22 2879 243 77 105 chr6 96484181 96484998 -85930244 - L1MEc LINE L1 -5365 1031 159 875 207 49 5 chr6 96485000 96485203 -85930039 + L1ME LINE L1 2349 2560 -4562 303 274 97 52 chr6 96485196 96485506 -85929736 - L1M4 LINE L1 -1199 4947 4624 * 191 267 100 0 chr6 96486252 96486312 -85928930 + L2 LINE L2 3154 3219 -53 355 253 40 0 chr6 96486598 96486697 -85928545 - L2 LINE L2 0 3313 3211 1372 205 0 0 chr6 96487475 96487699 -85927543 + MER58A DNA MER1_type 1 224 0 354 307 34 17 chr6 96488623 96488802 -85926440 + L1ME LINE L1 4998 5179 -1762 217 276 205 57 chr6 96488897 96489107 -85926135 + L2 LINE L2 58 298 -3016 277 266 86 36 chr6 96489371 96489510 -85925732 + L2 LINE L2 1277 1422 -1892 1257 145 68 10 chr6 96489546 96489753 -85925489 + MER20 DNA MER1_type 1 219 0 1207 272 95 43 chr6 96489938 96490500 -85924742 - L2 LINE L2 0 3313 2709 917 224 44 15 chr6 96490511 96490550 -85924692 + MER58A DNA MER1_type 1 37 -2383 2180 121 3 0 chr6 96490550 96490839 -85924403 - AluSx SINE Alu -22 290 1 917 224 44 15 chr6 96490839 96491004 -85924238 + MER58A DNA MER1_type 37 211 -13 1174 226 100 3 chr6 96491178 96491487 -85923755 + MER2 DNA MER2_type 7 345 0 877 319 51 21 chr6 96491488 96491972 -85923270 + L1ME LINE L1 6061 6554 -362 1577 263 49 34 chr6 96492035 96492590 -85922652 + L1MC4a LINE L1 5260 5733 -626 213 39 0 0 chr6 96492590 96492616 -85922626 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1577 263 49 34 chr6 96492616 96492712 -85922530 + L1MC4a LINE L1 5733 5826 -533 2606 115 33 3 chr6 96493053 96493417 -85921825 + THE1C LTR MaLR 1 375 0 1098 195 72 5 chr6 96493926 96494147 -85921095 - MER96B DNA MER1_type? -181 236 1 237 203 119 0 chr6 96494315 96494374 -85920868 - MER3 DNA MER1_type 0 209 144 987 242 96 52 chr6 96494511 96494970 -85920272 - L2 LINE L2 0 3313 2835 1850 155 6 22 chr6 96496449 96496569 -85918673 + AluJo SINE Alu 1 121 -191 261 0 0 0 chr6 96496569 96496598 -85918644 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1850 155 6 22 chr6 96496598 96496793 -85918449 + AluJo SINE Alu 121 311 -1 421 340 40 5 chr6 96497480 96497680 -85917562 - MIR SINE MIR -20 242 36 228 368 0 0 chr6 96497672 96497729 -85917513 + L2 LINE L2 3188 3244 -28 * 254 241 0 0 chr6 96497763 96497821 -85917421 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 1924 115 124 15 chr6 96498421 96498759 -85916483 - THE1C LTR MaLR 0 375 1 387 0 0 0 chr6 96498812 96498855 -85916387 + (CA)n Simple_repeat Simple_repeat 1 43 0 651 209 75 150 chr6 96499336 96499589 -85915653 + MLT1A1 LTR MaLR 123 356 -9 194 306 118 12 chr6 96499602 96499687 -85915555 + L2 LINE L2 3167 3260 -12 571 274 18 77 chr6 96500421 96500706 -85914536 - L1M4c LINE L1 -4485 2078 1811 496 205 29 99 chr6 96500877 96501048 -85914194 - L1M4c LINE L1 -4725 1659 1532 2467 146 31 49 chr6 96501530 96501983 -85913259 + MSTB2 LTR MaLR 13 457 0 351 200 29 0 chr6 96502078 96502148 -85913094 + MIR SINE MIR 82 153 -109 703 207 163 38 chr6 96502585 96502863 -85912379 - MLT1G1 LTR MaLR 0 595 194 233 323 21 10 chr6 96502920 96503016 -85912226 - MLT1G1 LTR MaLR -478 117 21 6819 38 0 0 chr6 96503237 96504032 -85911210 - L1PA3 LINE L1 0 6155 5361 1530 141 82 11 chr6 96504032 96504301 -85910941 + L1MB3 LINE L1 5893 6180 -3 262 274 16 0 chr6 96504938 96505000 -85910242 + MER94 DNA DNA 72 134 0 214 203 0 68 chr6 96505000 96505059 -85910183 + MIR SINE MIR 138 192 -70 252 321 13 13 chr6 96505154 96505364 -85909878 - L1P LINE L1 -1496 4650 4441 303 368 93 3 chr6 96505558 96505860 -85909382 + L2 LINE L2 2230 2558 -756 231 308 140 9 chr6 96505987 96506094 -85909148 + L2 LINE L2 2638 2758 -556 180 0 0 0 chr6 96506210 96506230 -85909012 + (CTATT)n Simple_repeat Simple_repeat 3 22 0 261 163 0 0 chr6 96507771 96507814 -85907428 - L2 LINE L2 -4 3309 3267 964 258 115 66 chr6 96507833 96508348 -85906894 - MLT1H LTR MaLR -2 547 8 2339 231 43 28 chr6 96508914 96509424 -85905818 + LTR40a LTR ERVL 2 519 0 2388 63 0 20 chr6 96509948 96510247 -85904995 - AluY SINE Alu -18 293 1 1234 191 173 61 chr6 96510576 96510996 -85904246 - MLT1H LTR MaLR 0 549 76 725 256 178 23 chr6 96510996 96511390 -85903852 + LTR16A1 LTR ERVL 3 457 0 1234 191 173 61 chr6 96511390 96511409 -85903833 - MLT1H LTR MaLR -473 76 61 369 200 130 20 chr6 96511413 96511513 -85903729 - MLT1H LTR MaLR -12 537 427 226 224 35 0 chr6 96511653 96511711 -85903531 + MLT1K LTR MaLR 25 84 -465 455 234 90 7 chr6 96511711 96511856 -85903386 + MLT1H LTR MaLR 384 540 -9 268 291 89 0 chr6 96512670 96512749 -85902493 - L2 LINE L2 -1 3271 3186 535 265 179 9 chr6 96513225 96513448 -85901794 + MIR SINE MIR 2 262 0 339 285 111 23 chr6 96515043 96515215 -85900027 + L2 LINE L2 3002 3188 -125 * 1254 261 62 47 chr6 96515203 96515763 -85899479 - L2 LINE L2 0 3313 2748 917 174 38 16 chr6 96515763 96515947 -85899295 - MER53 DNA DNA 0 189 2 1254 261 62 47 chr6 96515947 96515996 -85899246 - L2 LINE L2 -565 2748 2701 31 44 0 0 chr6 96515996 96516041 -85899201 + AT_rich Low_complexity Low_complexity 1 45 0 8128 28 5 0 chr6 96516135 96517728 -85897514 - L1PA3 LINE L1 0 6155 4559 12475 62 80 7 chr6 96517862 96519568 -85895674 - L1P LINE L1 -4311 1835 5 247 250 60 24 chr6 96519657 96519741 -85895501 + L1MC4 LINE L1 6660 6746 -1296 * 302 152 61 0 chr6 96519704 96519770 -85895472 - L1ME1 LINE L1 -1 6165 6096 27 96 0 0 chr6 96519832 96519915 -85895327 + AT_rich Low_complexity Low_complexity 1 83 0 306 233 96 20 chr6 96520239 96520412 -85894830 - L1MEc LINE L1 -1109 1467 1296 333 307 40 0 chr6 96521528 96521629 -85893613 - MIR3 SINE MIR -13 195 91 450 288 80 60 chr6 96521839 96522204 -85893038 + MLT1K LTR MaLR 215 586 -2 863 199 27 16 chr6 96523912 96524098 -85891144 + AluJo SINE Alu 120 307 -5 1032 293 56 20 chr6 96524374 96524729 -85890513 - LTR16B LTR ERVL 0 464 97 450 36 0 0 chr6 96525535 96525591 -85889651 + (TG)n Simple_repeat Simple_repeat 1 56 0 247 252 59 59 chr6 96525977 96526112 -85889130 + L1MDa LINE L1 1103 1237 -5145 438 286 127 36 chr6 96526169 96526202 -85889040 + L1MDa LINE L1 1295 1324 -5239 258 32 0 0 chr6 96526202 96526233 -85889009 + (GA)n Simple_repeat Simple_repeat 1 31 0 438 286 127 36 chr6 96526233 96527006 -85888236 + L1MDa LINE L1 1324 2351 -4212 2206 117 0 16 chr6 96527010 96527317 -85887925 + AluSq SINE Alu 1 302 -11 725 100 77 31 chr6 96527726 96527856 -85887386 + L1MB3 LINE L1 5770 5905 -278 * 44635 42 3 1 chr6 96527855 96534001 -85881241 - L1PA4 LINE L1 -1 6154 1 522 211 9 9 chr6 96534001 96534110 -85881132 - L2 LINE L2 -600 2714 2606 201 138 0 0 chr6 96534133 96534162 -85881080 + (GGAA)n Simple_repeat Simple_repeat 2 30 0 359 338 77 42 chr6 96534163 96534474 -85880768 - L2 LINE L2 -410 2904 2583 408 273 80 69 chr6 96535358 96535721 -85879521 - MLT1J LTR MaLR 0 470 84 181 245 0 75 chr6 96536043 96536096 -85879146 + L2 LINE L2 3224 3272 0 28 0 0 0 chr6 96536266 96536294 -85878948 + AT_rich Low_complexity Low_complexity 1 28 0 488 156 15 22 chr6 96537212 96537347 -85877895 + GA-rich Low_complexity Low_complexity 2 135 0 401 280 19 0 chr6 96537992 96538099 -85877143 + MER5B DNA MER1_type 3 111 -67 342 317 117 10 chr6 96538341 96538546 -85876696 - MIR SINE MIR -27 235 9 578 259 36 0 chr6 96538643 96538782 -85876460 + MLT1C LTR MaLR 259 402 -65 192 267 70 58 chr6 96539350 96539436 -85875806 + L2 LINE L2 3142 3228 -44 307 234 64 21 chr6 96539451 96539545 -85875697 + MER94 DNA DNA 8 105 -29 185 294 0 20 chr6 96539696 96539747 -85875495 + L2 LINE L2 3264 3313 0 2053 208 33 11 chr6 96539788 96540244 -85874998 + MLT1C LTR MaLR 1 466 -1 437 359 47 49 chr6 96540324 96540501 -85874741 + L2 LINE L2 2817 2993 -279 1718 141 33 39 chr6 96540501 96540806 -85874436 - AluJb SINE Alu -7 305 3 437 359 47 49 chr6 96540806 96541057 -85874185 + L2 LINE L2 2993 3244 -28 2069 113 63 33 chr6 96541059 96541423 -85873819 - THE1C LTR MaLR 0 375 1 335 217 39 114 chr6 96543781 96543969 -85871273 + MER5B DNA MER1_type 16 174 -4 298 312 94 34 chr6 96544132 96544398 -85870844 - L2 LINE L2 -584 2730 2449 246 346 77 10 chr6 96544595 96544699 -85870543 + L2 LINE L2 3150 3260 -12 362 281 115 50 chr6 96547915 96548054 -85867188 + MIR3 SINE MIR 58 205 -3 266 274 16 0 chr6 96548230 96548292 -85866950 - L2 LINE L2 -1 3271 3209 577 245 152 62 chr6 96548324 96548647 -85866595 - MLT1J2 LTR MaLR 0 450 99 962 171 15 39 chr6 96548703 96548967 -85866275 - AluJo SINE Alu 0 343 85 231 336 48 32 chr6 96549175 96549300 -85865942 - MIR3 SINE MIR -78 130 4 252 282 118 9 chr6 96549301 96549411 -85865831 - L2 LINE L2 -261 3011 2890 261 247 172 0 chr6 96550499 96550592 -85864650 + MIR SINE MIR 46 154 -108 465 305 74 32 chr6 96550819 96551009 -85864233 + MIR SINE MIR 45 242 -20 790 146 0 21 chr6 96551858 96552002 -85863240 + L1MB7 LINE L1 6039 6179 -5 1134 186 39 0 chr6 96552186 96552390 -85862852 + MER20 DNA MER1_type 1 212 -7 401 295 51 18 chr6 96552849 96553032 -85862210 + MIR SINE MIR 3 192 -57 204 324 28 14 chr6 96553496 96553567 -85861675 - MIR SINE MIR -11 251 180 582 284 76 5 chr6 96553591 96553788 -85861454 - MIR SINE MIR -1 261 51 356 322 73 59 chr6 96554655 96554944 -85860298 + L2 LINE L2 2948 3240 -32 206 374 0 0 chr6 96554961 96555044 -85860198 + G-rich Low_complexity Low_complexity 4 86 0 1431 231 72 31 chr6 96555096 96555542 -85859700 - MLT1C LTR MaLR -3 464 1 786 132 11 22 chr6 96555940 96556122 -85859120 + CT-rich Low_complexity Low_complexity 1 180 0 445 244 0 44 chr6 96557481 96557616 -85857626 + MER94 DNA DNA 1 129 -5 219 357 101 24 chr6 96558132 96558300 -85856942 - L3b LINE CR1 -89 1494 1314 201 204 37 19 chr6 96558770 96558824 -85856418 + L2 LINE L2 3259 3313 0 284 309 49 24 chr6 96559030 96559153 -85856089 + MIR3 SINE MIR 78 203 -5 316 340 0 10 chr6 96561063 96561166 -85854076 - MIR SINE MIR 0 262 161 374 296 71 75 chr6 96561190 96561484 -85853758 - MLT1K LTR MaLR -38 550 258 342 0 0 0 chr6 96563541 96563579 -85851663 + (GGAGA)n Simple_repeat Simple_repeat 5 42 0 326 261 14 0 chr6 96563802 96563871 -85851371 + Zaphod DNA AcHobo 2 71 -3960 934 197 38 6 chr6 96566872 96567055 -85848187 - MIR SINE MIR -3 259 71 2363 146 39 10 chr6 96567653 96568063 -85847179 + MSTA LTR MaLR 4 425 -3 344 280 143 24 chr6 96570662 96570921 -85844321 + L2 LINE L2 2735 3011 -302 1900 228 94 14 chr6 96571034 96571472 -85843770 + MLT2B1 LTR ERVL 1 473 -47 370 108 0 3 chr6 96571517 96571579 -85843663 + MLT2C2 LTR ERVL 416 464 0 404 185 71 169 chr6 96571579 96571684 -85843558 + L2 LINE L2 3147 3228 -85 1583 170 60 0 chr6 96571684 96571967 -85843275 - AluSg SINE Alu -10 300 1 404 185 71 169 chr6 96571967 96572045 -85843197 + L2 LINE L2 3228 3312 -1 340 267 62 68 chr6 96572347 96572523 -85842719 - L2 LINE L2 -2 3270 3096 310 317 81 63 chr6 96572615 96573085 -85842157 + L2 LINE L2 2797 3272 0 244 277 43 0 chr6 96573085 96573179 -85842063 + (TGGA)n Simple_repeat Simple_repeat 2 99 0 375 78 0 0 chr6 96573180 96573231 -85842011 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 817 279 59 4 chr6 96573641 96573878 -85841364 + MIR SINE MIR 7 256 -6 2674 108 3 120 chr6 96574474 96574864 -85840378 - L1MB3 LINE L1 0 6183 5878 1883 161 0 0 chr6 96574864 96575168 -85840074 - AluJb SINE Alu -8 304 1 2674 108 3 120 chr6 96575168 96575342 -85839900 - L1MB3 LINE L1 -305 5878 5685 1870 164 73 9 chr6 96575424 96575765 -85839477 + MLT1A1 LTR MaLR 3 365 0 2052 135 146 13 chr6 96575795 96576173 -85839069 - MSTA LTR MaLR 0 428 1 8946 176 28 33 chr6 96576173 96577428 -85837814 - MSTA-int LTR MaLR 0 1651 406 428 243 122 0 chr6 96577428 96577535 -85837707 - FLAM_C SINE Alu -13 120 1 8946 176 28 33 chr6 96577535 96577939 -85837303 - MSTA-int LTR MaLR -1245 406 1 2079 137 143 13 chr6 96577939 96578318 -85836924 - MSTA LTR MaLR 0 428 1 511 217 102 1 chr6 96578371 96578516 -85836726 - MIR SINE MIR -62 146 16 286 321 125 36 chr6 96580244 96580412 -85834830 + MER91A DNA MER1_type 14 196 0 261 345 18 18 chr6 96582101 96582211 -85833031 + L3 LINE CR1 324 433 -1144 532 258 53 48 chr6 96582250 96582459 -85832783 - MLT1J LTR MaLR -65 446 237 1568 172 0 72 chr6 96582497 96582816 -85832426 - AluJo SINE Alu -16 296 1 1968 108 0 14 chr6 96582825 96583102 -85832140 - AluSx SINE Alu -15 297 25 188 104 188 42 chr6 96583533 96583581 -85831661 + L3b LINE CR1 1177 1231 -352 3076 234 72 40 chr6 96583762 96585049 -85830193 - L1MD2 LINE L1 -14 6345 5022 905 147 4 5 chr6 96585154 96586295 -85828947 + BSR/Beta Satellite Satellite 1 1139 -36 1146 119 0 0 chr6 96586398 96586657 -85828585 + (GAATG)n Satellite Satellite 1 259 0 974 143 2 0 chr6 96586670 96587149 -85828093 + (GAATG)n Satellite Satellite 1 480 0 1002 117 0 0 chr6 96587162 96587341 -85827901 + (GAATG)n Satellite Satellite 2 180 0 360 111 0 0 chr6 96587355 96587418 -85827824 + (GAATG)n Satellite Satellite 5 67 0 696 80 0 0 chr6 96587518 96587618 -85827624 + (GAATG)n Satellite Satellite 3 102 0 977 123 6 0 chr6 96587635 96587814 -85827428 + (GAATG)n Satellite Satellite 1 180 0 198 118 0 0 chr6 96587829 96587863 -85827379 + (GAATG)n Satellite Satellite 2 35 0 1155 107 3 3 chr6 96587883 96588357 -85826885 + (GAATG)n Satellite Satellite 1 654 0 784 126 0 53 chr6 96588378 96588568 -85826674 + (GAATG)n Satellite Satellite 1 180 0 462 155 0 0 chr6 96588584 96588681 -85826561 + (GAATG)n Satellite Satellite 3 99 0 890 167 8 0 chr6 96588693 96588945 -85826297 + (GAATG)n Satellite Satellite 1 254 0 1017 130 6 7 chr6 96589050 96591425 -85823817 + BSR/Beta Satellite Satellite 1 2372 -13 2629 217 83 28 chr6 96591532 96592328 -85822914 - L1MDb LINE L1 -1120 5420 4581 * 4933 224 52 63 chr6 96592322 96592803 -85822439 - L1MDb LINE L1 -2347 4193 3708 1996 153 0 3 chr6 96592803 96593104 -85822138 - AluSx SINE Alu -12 300 1 4933 224 52 63 chr6 96593104 96594127 -85821115 - L1MDb LINE L1 -2832 3708 2676 1841 154 17 0 chr6 96594127 96594420 -85820822 - AluSq SINE Alu -15 298 1 4933 224 52 63 chr6 96594420 96595791 -85819451 - L1MDb LINE L1 -3864 2676 1357 1768 177 3 3 chr6 96595791 96596085 -85819157 + AluJo SINE Alu 1 294 -18 4933 224 52 63 chr6 96596085 96596531 -85818711 - L1MDb LINE L1 -5183 1357 908 962 278 17 62 chr6 96596958 96597375 -85817867 - L1MDb LINE L1 -6127 413 16 182 350 0 0 chr6 96600507 96600587 -85814655 + MIR3 SINE MIR 114 193 -15 670 223 33 60 chr6 96600671 96600886 -85814356 - MER3 DNA MER1_type 0 209 1 1047 257 157 26 chr6 96601825 96602284 -85812958 + LTR33 LTR ERVL 1 519 -2 630 275 47 46 chr6 96602497 96602777 -85812465 - MLT1F1 LTR MaLR -283 247 1 428 231 67 22 chr6 96603062 96603196 -85812046 - MIR3 SINE MIR -28 180 41 424 300 36 40 chr6 96604250 96604503 -85810739 + MIR SINE MIR 1 252 -10 1843 124 12 0 chr6 96604507 96604757 -85810485 + AluSx SINE Alu 1 253 -59 2377 131 19 19 chr6 96605775 96606149 -85809093 + THE1C LTR MaLR 1 374 -1 294 29 0 0 chr6 96606149 96606184 -85809058 + (TG)n Simple_repeat Simple_repeat 2 36 0 872 223 6 6 chr6 96606232 96606389 -85808853 + FRAM SINE Alu 1 157 -9 358 288 283 23 chr6 96606682 96607116 -85808126 - HAL1 LINE L1 -21 2486 1940 184 263 145 13 chr6 96608585 96608661 -85806581 + MIR3 SINE MIR 12 97 -111 380 266 156 26 chr6 96611296 96611450 -85803792 + MER91A DNA MER1_type 20 193 -3 285 300 45 18 chr6 96612011 96612121 -85803121 + MIR SINE MIR 70 182 -80 24 0 0 0 chr6 96613467 96613491 -85801751 + AT_rich Low_complexity Low_complexity 1 24 0 322 280 80 0 chr6 96613971 96614071 -85801171 + MIR3 SINE MIR 77 184 -24 271 138 0 52 chr6 96614260 96614318 -85800924 + MLT1K LTR MaLR 449 503 -85 2869 154 2 18 chr6 96614425 96614860 -85800382 + MSTC LTR MaLR 1 428 0 6080 65 13 11 chr6 96616201 96616965 -85798277 + MER4E LTR ERV1 1 766 0 2277 261 138 21 chr6 96617840 96619027 -85796215 - L2 LINE L2 -1 3312 1984 599 295 75 15 chr6 96619193 96619461 -85795781 - L2 LINE L2 -1317 1997 1714 24 0 0 0 chr6 96621187 96621211 -85794031 + AT_rich Low_complexity Low_complexity 1 24 0 4129 7 0 0 chr6 96621212 96621645 -85793597 - L1PA2 LINE L1 -12 6143 5711 301 191 16 16 chr6 96622548 96622611 -85792631 + MIR SINE MIR 117 179 -83 203 156 0 44 chr6 96624512 96624557 -85790685 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 256 228 244 16 chr6 96628872 96628999 -85786243 + MIR SINE MIR 97 252 -10 3934 179 54 59 chr6 96629032 96630166 -85785076 - L1MB2 LINE L1 -2 6169 5045 2313 69 10 3 chr6 96630166 96630454 -85784788 + AluY SINE Alu 1 290 -21 3934 179 54 59 chr6 96630454 96631027 -85784215 - L1MB2 LINE L1 -1126 5045 4471 23 33 0 0 chr6 96631488 96631518 -85783724 + AT_rich Low_complexity Low_complexity 1 30 0 1634 197 25 0 chr6 96631991 96632316 -85782926 - L1MD3 LINE L1 -778 7217 6885 1864 165 3 10 chr6 96632340 96632643 -85782599 - AluJb SINE Alu -11 301 1 531 187 53 27 chr6 96633564 96633714 -85781528 + L1ME4a LINE L1 5955 6108 -13 1201 248 70 7 chr6 96633858 96634156 -85781086 + MER119 DNA MER1_type 1 317 -266 609 179 157 0 chr6 96634171 96634305 -85780937 + MER119 DNA MER1_type 429 583 0 2843 143 41 52 chr6 96634841 96635357 -85779885 + LTR54 LTR ERV1 1 510 0 888 282 167 9 chr6 96635561 96635980 -85779262 + L2 LINE L2 1820 2304 -1010 363 301 185 24 chr6 96635961 96636304 -85778938 - L2 LINE L2 -2 3300 2919 * 786 340 62 11 chr6 96636538 96636911 -85778331 + L2 LINE L2 2346 2737 -577 4200 201 45 46 chr6 96636911 96638907 -85776335 + L1ME1 LINE L1 4151 6144 -22 705 236 62 6 chr6 96639143 96639321 -85775921 - MIR SINE MIR -10 252 65 291 350 8 17 chr6 96639390 96639507 -85775735 - MIR SINE MIR -127 135 20 261 351 26 39 chr6 96645106 96645139 -85770103 - MIR3 SINE MIR -27 181 149 1849 171 0 3 chr6 96645139 96645437 -85769805 - AluJb SINE Alu -15 297 1 261 351 26 39 chr6 96645437 96645557 -85769685 - MIR3 SINE MIR -59 149 30 408 82 0 0 chr6 96645700 96645761 -85769481 + (CA)n Simple_repeat Simple_repeat 2 62 0 285 293 132 0 chr6 96646337 96646443 -85768799 + L2 LINE L2 3185 3304 -9 23 33 0 0 chr6 96647932 96647962 -85767280 + AT_rich Low_complexity Low_complexity 1 30 0 248 274 42 11 chr6 96648362 96648457 -85766785 + (TATATG)n Simple_repeat Simple_repeat 1 98 0 185 191 0 24 chr6 96649168 96649210 -85766032 - L2 LINE L2 -2 3270 3230 180 329 47 65 chr6 96650109 96650279 -85764963 + MIR SINE MIR 48 214 -48 218 345 62 9 chr6 96651003 96651116 -85764126 - MIR SINE MIR -30 232 114 271 252 43 78 chr6 96652808 96652923 -85762319 + L2 LINE L2 3203 3313 0 335 256 171 16 chr6 96652970 96653099 -85762143 - MIR SINE MIR -35 227 79 * 651 288 37 90 chr6 96653093 96653392 -85761850 + L2 LINE L2 2990 3272 0 1973 142 13 3 chr6 96653449 96653752 -85761490 + AluJo SINE Alu 7 312 0 199 301 0 75 chr6 96653805 96653898 -85761344 - L2 LINE L2 -1010 2304 2219 2329 100 0 0 chr6 96654234 96654535 -85760707 + AluSg SINE Alu 1 301 -9 198 0 0 0 chr6 96655204 96655226 -85760016 + (GA)n Simple_repeat Simple_repeat 1 22 0 526 317 120 2 chr6 96655784 96656005 -85759237 + MIR SINE MIR 15 259 -3 1398 134 15 177 chr6 96656165 96656561 -85758681 - MER47A DNA MER2_type 0 366 35 23378 32 3 32 chr6 96656562 96660202 -85755040 + L1PA5 LINE L1 2523 6146 -8 255 182 23 0 chr6 96660234 96660278 -85754964 - MER47A DNA MER2_type -319 47 3 25 0 0 0 chr6 96660443 96660468 -85754774 + AT_rich Low_complexity Low_complexity 1 25 0 1675 153 77 3 chr6 96660620 96660907 -85754335 + AluJo SINE Alu 5 312 0 228 135 0 0 chr6 96660909 96660946 -85754296 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 855 48 0 0 chr6 96661543 96661672 -85753570 + L1PA4 LINE L1 6037 6165 0 183 416 48 16 chr6 96662009 96662134 -85753108 + L2 LINE L2 3108 3236 -36 1104 144 93 10 chr6 96662136 96662330 -85752912 + MER6B DNA MER2_type 1 210 0 2441 45 3 0 chr6 96662592 96662883 -85752359 + AluY SINE Alu 1 292 -19 310 181 236 55 chr6 96664537 96664664 -85750578 + MIR SINE MIR 113 262 0 24 53 0 0 chr6 96664845 96664883 -85750359 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr6 96665339 96665382 -85749860 + AT_rich Low_complexity Low_complexity 1 43 0 351 216 103 21 chr6 96666955 96667052 -85748190 - L2 LINE L2 -10 3303 3199 327 282 46 8 chr6 96667939 96668070 -85747172 - MER112 DNA MER1_type 0 260 125 1237 159 0 15 chr6 96669983 96670178 -85745064 + AluJo SINE Alu 1 192 -120 9615 147 16 5 chr6 96670178 96671718 -85743524 + L1MB7 LINE L1 5 1560 -5303 2247 146 39 36 chr6 96671724 96672270 -85742972 + MLT2A2 LTR ERVL 1 554 0 8475 151 37 12 chr6 96672270 96675333 -85739909 + L1MB7 LINE L1 1562 4705 -2157 3437 58 35 0 chr6 96675334 96675768 -85739474 + LTR2 LTR ERV1 1 449 0 45234 172 7 20 chr6 96675768 96683677 -85731565 + HERVE LTR ERV1 1 7811 -2 4150 0 0 0 chr6 96683677 96684126 -85731116 + LTR2 LTR ERV1 1 449 0 5475 204 5 9 chr6 96684134 96685370 -85729872 + L1 LINE L1 4711 5941 -921 272 131 16 49 chr6 96685353 96685414 -85729828 - L1MC4 LINE L1 -1326 6716 6658 * 354 195 0 0 chr6 96685426 96685503 -85729739 + (TA)n Simple_repeat Simple_repeat 2 78 0 2690 88 3 3 chr6 96685519 96685884 -85729358 + L1PB1 LINE L1 5782 6146 -5 1727 155 31 34 chr6 96687441 96687732 -85727510 + AluJb SINE Alu 1 290 -22 2266 102 0 3 chr6 96687990 96688294 -85726948 + AluSx SINE Alu 1 303 -9 479 254 0 25 chr6 96688465 96688583 -85726659 + L1MB7 LINE L1 4757 4871 -1991 837 144 0 27 chr6 96688585 96688731 -85726511 + FLAM_C SINE Alu 1 142 -1 1145 212 62 97 chr6 96688733 96690214 -85725028 + L1MB7 LINE L1 4877 6500 -400 230 122 20 20 chr6 96690214 96690263 -85724979 + MADE1 DNA Mariner 32 80 0 1145 212 62 97 chr6 96690263 96690642 -85724600 + L1MB7 LINE L1 6500 6891 -9 1477 161 33 66 chr6 96690648 96690952 -85724290 - AluJb SINE Alu -18 294 1 1587 134 51 40 chr6 96691155 96691430 -85723812 - AluJb SINE Alu -6 306 29 22 88 0 0 chr6 96691650 96691707 -85723535 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr6 96691777 96691798 -85723444 + AT_rich Low_complexity Low_complexity 1 21 0 826 231 6 0 chr6 96691813 96691969 -85723273 + FAM SINE Alu 1 157 -18 383 169 0 15 chr6 96692054 96692119 -85723123 + Tigger2 DNA MER2_type 6 69 -2649 * 1162 94 17 11 chr6 96692106 96692287 -85722955 + Tigger2 DNA MER2_type 2270 2451 -267 347 292 58 8 chr6 96693381 96693501 -85721741 + HsTC2 DNA Tc2 1 126 -1772 2382 84 0 0 chr6 96693635 96693934 -85721308 + AluSp SINE Alu 1 299 -14 1159 97 0 23 chr6 96695755 96695930 -85719312 - L1PA11 LINE L1 -1 6173 6003 1068 293 81 11 chr6 96695937 96696592 -85718650 + L1MC4a LINE L1 2755 3455 -2691 272 270 56 0 chr6 96696671 96696760 -85718482 + L1MC4a LINE L1 3567 3660 -2486 1609 159 37 26 chr6 96696785 96696913 -85718329 + L1MC1 LINE L1 5189 5314 -1019 1768 174 7 10 chr6 96696913 96697218 -85718024 + AluJo SINE Alu 6 309 -3 1609 159 37 26 chr6 96697218 96698139 -85717103 + L1MC1 LINE L1 5314 6331 -2 2127 188 61 14 chr6 96698140 96698645 -85716597 + L1MC2 LINE L1 5816 6344 0 221 231 0 15 chr6 96698696 96698761 -85716481 + GA-rich Low_complexity Low_complexity 2 65 0 7380 216 79 94 chr6 96698790 96701903 -85713339 + L1MC4a LINE L1 3794 6952 -856 2327 142 54 5 chr6 96701903 96702312 -85712930 + Tigger2a DNA MER2_type 5 433 -1 7380 216 79 94 chr6 96702312 96702335 -85712907 + L1MC4a LINE L1 6952 6974 -834 881 150 0 0 chr6 96702335 96702462 -85712780 + FLAM_C SINE Alu 1 127 -16 7380 216 79 94 chr6 96702462 96702493 -85712749 + L1MC4a LINE L1 6974 7004 -804 2140 106 20 3 chr6 96702493 96702785 -85712457 + AluSx SINE Alu 1 297 -15 7380 216 79 94 chr6 96702785 96703591 -85711651 + L1MC4a LINE L1 7004 7808 0 1406 203 27 43 chr6 96703600 96703900 -85711342 + AluJo SINE Alu 1 295 -17 241 267 17 0 chr6 96703980 96704040 -85711202 + L1ME3A LINE L1 5589 5649 -513 321 263 61 0 chr6 96704122 96704221 -85711021 + L1ME3A LINE L1 5798 5902 -260 2219 132 130 5 chr6 96704224 96704602 -85710640 + MSTA LTR MaLR 4 428 0 472 301 29 44 chr6 96704733 96704939 -85710303 + L1ME3A LINE L1 5963 6165 -5 21 57 0 0 chr6 96705021 96705056 -85710186 + AT_rich Low_complexity Low_complexity 1 35 0 445 268 43 14 chr6 96705279 96705417 -85709825 + L1MEc LINE L1 121 262 -6134 1319 217 83 62 chr6 96705468 96705971 -85709271 + L1ME1 LINE L1 5644 6157 -9 23 33 0 0 chr6 96706000 96706030 -85709212 + AT_rich Low_complexity Low_complexity 1 30 0 9397 149 73 72 chr6 96706085 96707998 -85707244 + L1MA7 LINE L1 2903 5027 -1264 818 155 34 92 chr6 96707998 96708204 -85707038 + MSTD LTR MaLR 203 396 0 9397 149 73 72 chr6 96708204 96709472 -85705770 + L1MA7 LINE L1 5027 6291 0 297 0 0 0 chr6 96709777 96709810 -85705432 + (CA)n Simple_repeat Simple_repeat 2 34 0 2147 89 7 0 chr6 96710466 96710747 -85704495 + AluY SINE Alu 22 304 -7 1580 168 17 37 chr6 96710758 96711055 -85704187 + AluJb SINE Alu 1 291 -21 300 152 20 111 chr6 96711056 96711155 -85704087 + L1MC4 LINE L1 6614 6703 -1339 663 65 0 74 chr6 96711158 96711501 -85703741 + (TA)n Simple_repeat Simple_repeat 1 317 0 2347 185 6 23 chr6 96712502 96712585 -85702657 + L1MB4 LINE L1 5685 5768 -412 1495 183 73 0 chr6 96712585 96712858 -85702384 + AluJo SINE Alu 8 300 -12 2347 185 6 23 chr6 96712858 96713245 -85701997 + L1MB4 LINE L1 5768 6147 -33 249 218 0 0 chr6 96713266 96713321 -85701921 + L1MB4 LINE L1 6126 6180 0 397 327 55 15 chr6 96713855 96714039 -85701203 + MIR SINE MIR 9 200 -62 397 107 0 27 chr6 96714258 96714333 -85700909 + (GAA)n Simple_repeat Simple_repeat 1 73 0 258 236 0 34 chr6 96714587 96714676 -85700566 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 343 343 93 6 chr6 96714831 96715003 -85700239 - MIR SINE MIR -71 191 5 5618 165 20 4 chr6 96715029 96716881 -85698361 + L1PA16 LINE L1 4282 6164 -2 2467 68 0 3 chr6 96717153 96717462 -85697780 + AluY SINE Alu 1 308 -3 213 313 0 16 chr6 96718378 96718442 -85696800 + L2 LINE L2 3204 3266 -6 24 0 0 0 chr6 96721922 96721946 -85693296 + AT_rich Low_complexity Low_complexity 1 24 0 2079 107 10 3 chr6 96722202 96722492 -85692750 + AluSg SINE Alu 1 292 -18 1027 172 91 29 chr6 96722682 96722987 -85692255 - MER33 DNA MER1_type 0 363 2 469 168 243 0 chr6 96723288 96723395 -85691847 + FLAM_A SINE Alu 1 133 0 228 194 0 81 chr6 96724959 96725021 -85690221 - L2 LINE L2 -1 3312 3256 1558 209 0 20 chr6 96725491 96725783 -85689459 - AluJo SINE Alu -23 289 4 1484 212 87 20 chr6 96726233 96726577 -85688665 + MLT1A2 LTR MaLR 1 367 -7 22 0 0 0 chr6 96726904 96726926 -85688316 + AT_rich Low_complexity Low_complexity 1 22 0 248 277 88 75 chr6 96727135 96727294 -85687948 + MIR SINE MIR 3 163 -99 1040 153 23 0 chr6 96727419 96727596 -85687646 - U17 snRNA snRNA -3 204 24 2758 0 0 0 chr6 96727617 96727916 -85687326 - AluYa5 SINE Alu -12 299 1 11709 32 2 0 chr6 96727981 96730151 -85685091 + L1PA4 LINE L1 3981 6153 -2 1637 223 28 23 chr6 96730708 96731102 -85684140 + L1MDa LINE L1 128 523 -6017 2063 144 20 0 chr6 96731285 96731590 -85683652 + AluSx SINE Alu 1 311 -1 28 48 0 0 chr6 96731827 96731869 -85683373 + AT_rich Low_complexity Low_complexity 1 42 0 303 389 64 27 chr6 96734155 96734453 -85680789 + L2 LINE L2 2004 2312 -1002 352 347 121 19 chr6 96734814 96735229 -85680013 + L2 LINE L2 2808 3264 -8 1258 267 14 38 chr6 96735496 96735919 -85679323 + L1MCb LINE L1 3 415 -5630 5970 134 42 40 chr6 96735919 96736439 -85678803 + Tigger3b DNA MER2_type 2 519 -2509 1837 108 176 6 chr6 96736439 96736762 -85678480 + MER83B LTR ERV1 1 378 0 5970 134 42 40 chr6 96736762 96736899 -85678343 + Tigger3b DNA MER2_type 519 654 -2374 2277 97 0 0 chr6 96736899 96737199 -85678043 - AluSx SINE Alu -12 300 1 5970 134 42 40 chr6 96737199 96737670 -85677572 + Tigger3b DNA MER2_type 654 1134 -97 1108 151 101 0 chr6 96737671 96737850 -85677392 - MER1B DNA MER1_type 0 339 143 324 244 103 0 chr6 96737859 96737937 -85677305 + LTR10A LTR ERV1 13 98 -511 1581 159 71 37 chr6 96737957 96738283 -85676959 + LTR10A LTR ERV1 212 548 -61 850 257 62 0 chr6 96738292 96738564 -85676678 + LTR10A-int LTR ERV1 1 289 -6360 272 247 152 45 chr6 96738723 96738901 -85676341 + LTR10A-int LTR ERV1 502 698 -5951 253 261 65 22 chr6 96738908 96739000 -85676242 + LTR10A-int LTR ERV1 975 1070 -5579 5552 98 12 28 chr6 96739008 96740076 -85675166 + HERV17 LTR ERV1 704 1720 -5176 317 262 167 0 chr6 96740078 96740162 -85675080 - LTR8 LTR ERV1 -438 253 156 11660 153 14 20 chr6 96740165 96743307 -85671935 + Harlequin LTR ERV1 1813 6645 -4 229 276 126 0 chr6 96743310 96743397 -85671845 + LTR10A LTR ERV1 1 98 -511 1651 156 67 37 chr6 96743416 96743744 -85671498 + LTR10A LTR ERV1 211 548 -61 840 114 114 0 chr6 96743757 96743888 -85671354 - MER1B DNA MER1_type -150 147 2 242 136 23 0 chr6 96743893 96743937 -85671305 + Tigger3(Golem) DNA MER2_type 2941 2985 -44 2584 201 30 72 chr6 96743962 96744755 -85670487 + L1MCb LINE L1 420 1179 -4866 1017 166 52 9 chr6 96744759 96744906 -85670336 + L1MB3 LINE L1 5117 5256 -927 2563 117 47 35 chr6 96744906 96745335 -85669907 - Tigger2a DNA MER2_type 0 434 1 1017 166 52 9 chr6 96745335 96746159 -85669083 + L1MB3 LINE L1 5256 6183 0 4394 224 105 32 chr6 96746166 96746251 -85668991 + L1MCb LINE L1 1172 1249 -5315 1573 171 21 21 chr6 96746251 96746532 -85668710 + AluJb SINE Alu 1 281 -31 4394 224 105 32 chr6 96746532 96747842 -85667400 + L1MCb LINE L1 1249 2462 -4102 1965 174 19 11 chr6 96747842 96748205 -85667037 + MER47A DNA MER2_type 1 366 0 4394 224 105 32 chr6 96748205 96749573 -85665669 + L1MCb LINE L1 2462 4140 -2424 1677 221 70 99 chr6 96749682 96750350 -85664892 + MLT1A2-int LTR MaLR 433 1463 -272 282 122 24 0 chr6 96750350 96750391 -85664851 - 5S rRNA rRNA -79 42 1 1677 221 70 99 chr6 96750391 96750651 -85664591 + MLT1A2-int LTR MaLR 1463 1729 -6 1418 241 27 32 chr6 96750656 96751026 -85664216 + MLT1A2 LTR MaLR 7 374 0 273 236 0 14 chr6 96751026 96751098 -85664144 + L1MCb LINE L1 4136 4206 -2358 2786 188 6 6 chr6 96751101 96751623 -85663619 + L1MC3 LINE L1 7107 7628 -157 1393 119 5 10 chr6 96751623 96751824 -85663418 + AluSg/x SINE Alu 85 284 -26 817 150 75 40 chr6 96751836 96752009 -85663233 + L1MC2 LINE L1 6156 6334 -10 270 0 0 0 chr6 96752014 96752044 -85663198 + (CA)n Simple_repeat Simple_repeat 2 31 0 30 69 0 0 chr6 96752104 96752162 -85663080 + AT_rich Low_complexity Low_complexity 1 58 0 477 0 0 0 chr6 96752900 96752953 -85662289 + (TA)n Simple_repeat Simple_repeat 1 53 0 1846 163 16 7 chr6 96753413 96753719 -85661523 + AluJb SINE Alu 4 312 0 2364 91 0 20 chr6 96753740 96754082 -85661160 + L1PA8A LINE L1 5797 6131 0 316 51 0 0 chr6 96754088 96754127 -85661115 - L1PA16 LINE L1 -682 5484 5446 3997 139 26 1 chr6 96754127 96754770 -85660472 + L1PA16 LINE L1 5494 6157 -9 26 30 0 0 chr6 96754770 96754803 -85660439 + AT_rich Low_complexity Low_complexity 1 33 0 192 365 0 0 chr6 96756388 96756451 -85658791 + MIR SINE MIR 52 114 -148 3034 150 107 0 chr6 96756479 96756605 -85658637 - L1MB3 LINE L1 0 6183 6072 198 0 0 0 chr6 96756605 96756627 -85658615 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 3034 150 107 0 chr6 96756627 96757068 -85658174 - L1MB3 LINE L1 -111 6072 5555 227 286 71 20 chr6 96757070 96757168 -85658074 + MIR SINE MIR 122 224 -38 2134 129 0 6 chr6 96757423 96757734 -85657508 - AluSc SINE Alu 0 309 1 1448 210 65 3 chr6 96758179 96758531 -85656711 + L1MC4a LINE L1 7073 7446 -362 602 178 42 0 chr6 96758541 96758659 -85656583 - MER68 LTR ERV1 -27 535 413 723 125 76 7 chr6 96758673 96758817 -85656425 + Charlie5 DNA MER1_type 2471 2624 0 493 235 113 39 chr6 96758822 96759026 -85656216 - L1MC5 LINE L1 -768 7193 6975 568 245 13 13 chr6 96759048 96759203 -85656039 + LTR41 LTR ERVL 1 155 -618 1545 327 32 25 chr6 96759454 96759620 -85655622 + ERVL LTR ERVL 1773 1936 -3828 1909 165 24 15 chr6 96759620 96759954 -85655288 - MER1B DNA MER1_type 0 337 1 1545 327 32 25 chr6 96759954 96760420 -85654822 + ERVL LTR ERVL 1936 2409 -3355 572 246 21 13 chr6 96760565 96760722 -85654520 - MLT2E LTR ERVL 0 663 471 876 280 50 25 chr6 96760732 96761011 -85654231 - MLT2F LTR ERVL -91 572 287 510 286 49 40 chr6 96761045 96761195 -85654047 - MLT2E LTR ERVL -476 152 1 640 282 143 45 chr6 96761216 96761914 -85653328 + L2 LINE L2 2537 3313 0 478 276 103 38 chr6 96761933 96762379 -85652863 + L1MEc LINE L1 1261 1735 -4661 209 326 0 0 chr6 96762646 96762732 -85652510 + A-rich Low_complexity Low_complexity 1 86 0 331 218 90 39 chr6 96762751 96762907 -85652335 + L1MEc LINE L1 2206 2369 -3846 1955 213 25 34 chr6 96762910 96763380 -85651862 - MLT1C LTR MaLR -1 466 1 309 330 124 19 chr6 96763470 96763679 -85651563 - L2 LINE L2 -654 2660 2430 315 294 108 20 chr6 96764149 96764251 -85650991 + L2 LINE L2 3162 3272 0 1382 60 16 0 chr6 96765888 96766070 -85649172 + L1MA1 LINE L1 6114 6298 -4 29 60 0 0 chr6 96766185 96766235 -85649007 + AT_rich Low_complexity Low_complexity 1 50 0 1771 149 35 7 chr6 96766405 96766693 -85648549 + AluJb SINE Alu 1 296 -16 32 43 0 0 chr6 96766849 96766895 -85648347 + AT_rich Low_complexity Low_complexity 1 46 0 3479 97 16 10 chr6 96767738 96768246 -85646996 + MER9 LTR ERVK 1 511 0 2183 124 0 0 chr6 96768855 96769162 -85646080 + AluSg1 SINE Alu 1 307 -2 2162 112 0 0 chr6 96769367 96769661 -85645581 + AluSg SINE Alu 1 294 -16 2289 259 97 61 chr6 96771668 96772055 -85643187 - L1MC4 LINE L1 -437 7605 7233 828 48 0 0 chr6 96772055 96772160 -85643082 - L1PA5 LINE L1 -2 6152 6048 2289 259 97 61 chr6 96772160 96773059 -85642183 - L1MC4 LINE L1 -809 7233 6273 30 0 0 0 chr6 96773814 96773844 -85641398 + AT_rich Low_complexity Low_complexity 1 30 0 554 168 0 11 chr6 96774048 96774143 -85641099 - FLAM_A SINE Alu -8 134 41 339 25 0 0 chr6 96774193 96774233 -85641009 + (CA)n Simple_repeat Simple_repeat 2 41 0 1961 150 0 3 chr6 96774382 96774689 -85640553 + AluSx SINE Alu 1 306 -6 984 241 33 0 chr6 96774782 96774994 -85640248 + MER58A DNA MER1_type 6 224 0 1223 299 42 16 chr6 96775190 96775780 -85639462 + ERVL LTR ERVL 1968 2617 -3037 445 306 143 9 chr6 96775847 96776063 -85639179 - MIR SINE MIR 0 262 18 1521 172 3 66 chr6 96776096 96776416 -85638826 - AluJb SINE Alu -10 302 3 1486 178 35 7 chr6 96776438 96776755 -85638487 - L1M4 LINE L1 -411 5773 5457 977 294 84 21 chr6 96776770 96777198 -85638044 + ERVL LTR ERVL 2713 3167 -2487 429 237 237 18 chr6 96777264 96777483 -85637759 + LTR50 LTR ERVL 527 793 -2 360 307 0 47 chr6 96777808 96777935 -85637307 - L2 LINE L2 0 3313 3193 342 285 81 25 chr6 96777938 96778085 -85637157 - L1ME LINE L1 -530 5591 5436 2422 74 0 0 chr6 96778085 96778384 -85636858 + AluY SINE Alu 1 299 -12 342 285 81 25 chr6 96778384 96778441 -85636801 - L1ME LINE L1 -685 5436 5384 217 203 109 0 chr6 96778610 96778674 -85636568 - MIR SINE MIR -56 206 136 186 260 40 20 chr6 96778676 96778726 -85636516 + L2 LINE L2 3188 3238 -75 538 280 69 34 chr6 96778754 96778929 -85636313 - MIR SINE MIR -77 185 5 794 258 151 0 chr6 96779226 96779451 -85635791 - MIR SINE MIR 0 262 4 234 0 0 0 chr6 96780853 96780879 -85634363 + (A)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chr6 96781314 96781336 -85633906 + (TG)n Simple_repeat Simple_repeat 2 23 0 1355 155 10 0 chr6 96781375 96781582 -85633660 - AluJo SINE Alu -103 209 1 1655 170 4 7 chr6 96782358 96782634 -85632608 - AluJb SINE Alu -37 275 1 203 208 19 0 chr6 96782643 96782696 -85632546 + (TTA)n Simple_repeat Simple_repeat 1 54 0 2737 222 103 17 chr6 96783357 96784464 -85630778 - L1ME1 LINE L1 -5 6161 4959 240 261 0 29 chr6 96784487 96784556 -85630686 - L1ME1 LINE L1 -3560 2586 2520 1187 303 42 16 chr6 96784670 96785260 -85629982 + ERVL LTR ERVL 1968 2617 -3037 445 306 143 9 chr6 96785327 96785543 -85629699 - MIR SINE MIR 0 262 18 1521 172 3 66 chr6 96785576 96785896 -85629346 - AluJb SINE Alu -10 302 3 1486 178 35 7 chr6 96785918 96786235 -85629007 - L1M4 LINE L1 -411 5773 5457 977 294 84 21 chr6 96786250 96786678 -85628564 + ERVL LTR ERVL 2713 3167 -2487 429 237 237 18 chr6 96786744 96786963 -85628279 + LTR50 LTR ERVL 527 793 -2 360 307 0 47 chr6 96787288 96787415 -85627827 - L2 LINE L2 0 3313 3193 342 285 81 25 chr6 96787418 96787565 -85627677 - L1ME LINE L1 -530 5591 5436 2422 74 0 0 chr6 96787565 96787864 -85627378 + AluY SINE Alu 1 299 -12 342 285 81 25 chr6 96787864 96787921 -85627321 - L1ME LINE L1 -685 5436 5384 217 203 109 0 chr6 96788090 96788154 -85627088 - MIR SINE MIR -56 206 136 186 260 40 20 chr6 96788156 96788206 -85627036 + L2 LINE L2 3188 3238 -75 538 280 69 34 chr6 96788234 96788409 -85626833 - MIR SINE MIR -77 185 5 800 258 151 0 chr6 96788706 96788931 -85626311 - MIR SINE MIR 0 262 4 234 0 0 0 chr6 96790333 96790359 -85624883 + (A)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chr6 96790794 96790816 -85624426 + (TG)n Simple_repeat Simple_repeat 2 23 0 1330 155 10 0 chr6 96790855 96791062 -85624180 - AluJo SINE Alu -103 209 1 2032 106 0 4 chr6 96791839 96792114 -85623128 - AluSx SINE Alu -38 274 1 1727 155 31 34 chr6 96792372 96792663 -85622579 - AluJb SINE Alu -22 290 1 2683 88 3 3 chr6 96794220 96794585 -85620657 - L1PB1 LINE L1 -5 6146 5782 336 200 0 0 chr6 96794601 96794676 -85620566 + (TA)n Simple_repeat Simple_repeat 1 75 0 278 131 16 49 chr6 96794688 96794749 -85620493 + L1MC4 LINE L1 6658 6716 -1326 * 3989 210 6 11 chr6 96794730 96795692 -85619550 - L1 LINE L1 -919 5227 4271 1443 252 27 9 chr6 96795858 96796298 -85618944 - L1M4 LINE L1 -1317 4829 4382 1827 172 0 3 chr6 96796387 96796677 -85618565 + AluJo SINE Alu 6 294 -18 3944 209 37 32 chr6 96796679 96796952 -85618290 + L1MB4 LINE L1 4386 4656 -1524 7799 14 3 0 chr6 96796952 96797970 -85617272 + L1PA3 LINE L1 5135 6155 0 3944 209 37 32 chr6 96797970 96799413 -85615829 + L1MB4 LINE L1 4656 6104 -76 23 0 0 0 chr6 96799416 96799439 -85615803 + AT_rich Low_complexity Low_complexity 1 23 0 1186 180 48 31 chr6 96799627 96799916 -85615326 - L1MA9 LINE L1 -57 6255 5962 4173 218 49 32 chr6 96800216 96800808 -85614434 - L1MA9 LINE L1 -343 5969 5389 2134 96 3 51 chr6 96800808 96801121 -85614121 - AluSp SINE Alu -15 298 1 4173 218 49 32 chr6 96801121 96802633 -85612609 - L1MA9 LINE L1 -923 5389 3796 26 0 0 0 chr6 96802959 96802985 -85612257 + AT_rich Low_complexity Low_complexity 1 26 0 812 224 13 0 chr6 96802985 96803141 -85612101 - FAM SINE Alu -17 158 1 21 0 0 0 chr6 96803149 96803170 -85612072 + AT_rich Low_complexity Low_complexity 1 21 0 1962 153 0 3 chr6 96804197 96804491 -85610751 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr6 96804678 96804700 -85610542 + AT_rich Low_complexity Low_complexity 1 22 0 1259 143 19 5 chr6 96805377 96805593 -85609649 + MER20 DNA MER1_type 1 219 0 290 326 54 41 chr6 96806623 96806770 -85608472 - MIR SINE MIR -8 254 106 3908 176 29 8 chr6 96806867 96808032 -85607210 + L1MA9 LINE L1 4968 6287 -12 724 228 159 0 chr6 96808181 96808370 -85606872 - MER20 DNA MER1_type 0 219 1 474 344 70 67 chr6 96808742 96809027 -85606215 - L2 LINE L2 -52 3220 2935 304 209 118 73 chr6 96809336 96809446 -85605796 + L1MC4a LINE L1 5879 5993 -1815 21 36 0 0 chr6 96809870 96809898 -85605344 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 96810313 96810337 -85604905 + AT_rich Low_complexity Low_complexity 1 24 0 1953 144 49 11 chr6 96811260 96811608 -85603634 + MLT1A1 LTR MaLR 1 361 -4 2262 87 0 7 chr6 96811866 96812165 -85603077 + AluSc SINE Alu 1 297 -12 429 327 124 18 chr6 96812168 96812443 -85602799 - L2 LINE L2 -636 2678 2375 284 167 0 0 chr6 96812536 96812578 -85602664 - Tigger5 DNA MER2_type -2281 42 1 528 320 94 25 chr6 96812578 96813015 -85602227 - L2 LINE L2 -971 2343 1877 193 162 54 0 chr6 96813219 96813256 -85601986 + L3b LINE CR1 1527 1565 -18 997 98 0 0 chr6 96813625 96813758 -85601484 + AluSq/x SINE Alu 1 133 -180 2014 108 0 21 chr6 96813762 96814050 -85601192 + AluSc SINE Alu 1 282 -27 259 285 146 81 chr6 96814445 96815074 -85600168 + HAL1 LINE L1 1 670 -1837 508 207 0 43 chr6 96815508 96815624 -85599618 + MLT1D LTR MaLR 60 170 -335 1546 152 52 15 chr6 96815628 96815898 -85599344 - AluJb SINE Alu -4 308 29 551 135 0 0 chr6 96815898 96815987 -85599255 + MLT1D LTR MaLR 417 505 0 2410 78 0 0 chr6 96816018 96816326 -85598916 - AluY SINE Alu -3 308 1 1008 246 83 35 chr6 96816326 96816760 -85598482 + MER113 DNA MER1_type? 39 493 -28 21 71 0 0 chr6 96817891 96817933 -85597309 + AT_rich Low_complexity Low_complexity 1 42 0 569 147 0 33 chr6 96818070 96818301 -85596941 + AluSx SINE Alu 1 293 -19 1892 62 11 11 chr6 96819912 96820172 -85595070 + L1PA7 LINE L1 5882 6141 -13 1072 159 116 50 chr6 96820522 96820799 -85594443 + MER33 DNA MER1_type 30 324 0 228 344 16 0 chr6 96821490 96821612 -85593630 + L1M4 LINE L1 4532 4655 -1491 325 317 80 58 chr6 96821895 96822119 -85593123 + HAL1 LINE L1 1782 2010 -497 22 35 0 0 chr6 96822221 96822250 -85592992 + AT_rich Low_complexity Low_complexity 1 29 0 189 107 0 0 chr6 96822429 96822457 -85592785 + (A)n Simple_repeat Simple_repeat 1 28 0 1962 157 0 0 chr6 96822670 96822975 -85592267 + AluJb SINE Alu 1 305 -7 657 260 52 130 chr6 96822996 96823458 -85591784 + L1M4 LINE L1 3727 4152 -1994 503 306 147 33 chr6 96823463 96823904 -85591338 + L1M4 LINE L1 4266 4782 -1364 2322 98 0 3 chr6 96823904 96824211 -85591031 + AluSq SINE Alu 1 306 -7 503 306 147 33 chr6 96824211 96824315 -85590927 + L1M4 LINE L1 4782 4873 -1273 1122 179 67 18 chr6 96824666 96824890 -85590352 - MER46A DNA MER2_type -1 235 1 690 236 81 0 chr6 96825079 96825253 -85589989 - MER5A DNA MER1_type -1 188 1 872 189 18 75 chr6 96825267 96825495 -85589747 + MER20 DNA MER1_type 5 219 0 26 30 0 0 chr6 96825742 96825775 -85589467 + AT_rich Low_complexity Low_complexity 1 33 0 198 103 0 0 chr6 96825962 96825991 -85589251 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 234 116 0 0 chr6 96825997 96826040 -85589202 + (CA)n Simple_repeat Simple_repeat 2 44 0 408 20 0 0 chr6 96826298 96826347 -85588895 + (CA)n Simple_repeat Simple_repeat 2 50 0 231 303 41 14 chr6 96826360 96826505 -85588737 + L1MEd LINE L1 23 171 -5948 1662 151 16 33 chr6 96827036 96827341 -85587901 - THE1B LTR MaLR 0 364 65 294 148 284 0 chr6 96827698 96827779 -85587463 + L1MB2 LINE L1 5954 6057 -114 2207 95 3 13 chr6 96827779 96828083 -85587159 + AluSg SINE Alu 1 301 -9 202 296 93 81 chr6 96828516 96828688 -85586554 - MIR SINE MIR -8 254 81 659 193 8 0 chr6 96828847 96828966 -85586276 + FLAM_C SINE Alu 1 120 -23 1219 257 90 19 chr6 96829506 96829930 -85585312 + L1MCc LINE L1 17 470 -5953 1446 272 75 60 chr6 96830086 96830757 -85584485 + L1MCc LINE L1 791 1451 -5671 4483 94 23 27 chr6 96830757 96830804 -85584438 + L1PA11 LINE L1 5483 5529 -645 2235 95 3 0 chr6 96830804 96831100 -85584142 - AluSg SINE Alu -13 297 1 4483 94 23 27 chr6 96831100 96831745 -85583497 + L1PA11 LINE L1 5529 6172 -2 1446 272 75 60 chr6 96831745 96833014 -85582228 + L1MCc LINE L1 1451 2960 -4162 21 0 0 0 chr6 96833085 96833106 -85582136 + AT_rich Low_complexity Low_complexity 1 21 0 710 147 0 0 chr6 96833129 96833238 -85582004 + FLAM_C SINE Alu 19 127 -16 887 189 6 6 chr6 96833292 96833451 -85581791 + AluSg/x SINE Alu 134 292 -18 1328 242 94 52 chr6 96833455 96834240 -85581002 + L1MCc LINE L1 3010 3827 -3114 1768 182 3 0 chr6 96834252 96834548 -85580694 + AluJb SINE Alu 3 299 -13 23 0 0 0 chr6 96834558 96834581 -85580661 + AT_rich Low_complexity Low_complexity 1 23 0 427 261 50 37 chr6 96834618 96834779 -85580463 - LTR41 LTR ERVL -96 677 515 24 53 0 0 chr6 96835093 96835131 -85580111 + AT_rich Low_complexity Low_complexity 1 38 0 320 287 70 39 chr6 96836959 96837088 -85578154 - L2 LINE L2 0 3272 3140 263 163 20 0 chr6 96837472 96837521 -85577721 - MIR SINE MIR -27 235 186 673 177 61 61 chr6 96837855 96838053 -85577189 + LTR45 LTR ERV1 292 525 0 517 240 208 0 chr6 96838054 96838208 -85577034 - MIR SINE MIR -74 188 3 291 316 44 44 chr6 96838343 96838457 -85576785 + L2 LINE L2 3196 3309 -4 1116 234 123 87 chr6 96839429 96840022 -85575220 + MER77 LTR ERV1 54 707 -7 714 176 0 37 chr6 96841845 96841981 -85573261 + FLAM_C SINE Alu 3 133 0 2633 42 0 0 chr6 96842233 96842542 -85572700 - AluY SINE Alu -2 309 1 640 160 71 54 chr6 96842703 96842889 -85572353 + L1MA9 LINE L1 6088 6284 -50 23 0 0 0 chr6 96843057 96843080 -85572162 + AT_rich Low_complexity Low_complexity 1 23 0 1762 211 25 8 chr6 96843083 96843482 -85571760 - L1MB4 LINE L1 -76 6104 5699 2174 99 27 0 chr6 96843677 96843970 -85571272 + AluSq SINE Alu 1 301 -12 23 33 0 0 chr6 96844546 96844576 -85570666 + AT_rich Low_complexity Low_complexity 1 30 0 239 0 32 0 chr6 96845576 96845607 -85569635 + (ATG)n Simple_repeat Simple_repeat 1 32 0 2901 214 37 45 chr6 96845752 96846636 -85568606 + L1M4 LINE L1 4076 4952 -1194 1067 221 72 68 chr6 96848155 96848521 -85566721 + L1MC4a LINE L1 4819 5189 -957 2103 102 3 29 chr6 96848521 96848834 -85566408 + AluSq SINE Alu 1 305 -8 1067 221 72 68 chr6 96848834 96848970 -85566272 + L1MC4a LINE L1 5189 5323 -823 1541 168 45 60 chr6 96849496 96849848 -85565394 - MER7A DNA MER2_type 0 346 2 743 204 61 28 chr6 96849869 96850050 -85565192 - MER3 DNA MER1_type -22 187 1 2133 104 40 0 chr6 96850120 96850419 -85564823 - AluSx SINE Alu -1 311 1 556 118 25 10 chr6 96850597 96850715 -85564527 - MLT1E LTR MaLR -452 141 1 310 256 77 8 chr6 96850766 96850883 -85564359 + L1MC4a LINE L1 5629 5753 -368 2115 130 3 0 chr6 96851878 96852177 -85563065 + AluSp SINE Alu 1 300 -13 446 120 13 0 chr6 96852177 96852252 -85562990 + (TA)n Simple_repeat Simple_repeat 1 76 0 31224 99 15 66 chr6 96852475 96858955 -85556287 + L1PA7 LINE L1 12 6141 -13 2209 109 3 0 chr6 96859122 96859425 -85555817 + AluSg SINE Alu 5 308 -2 25 0 0 0 chr6 96860279 96860304 -85554938 + AT_rich Low_complexity Low_complexity 1 25 0 675 207 9 0 chr6 96861230 96861346 -85553896 + FLAM_A SINE Alu 1 117 -16 441 0 0 0 chr6 96861352 96861401 -85553841 + (CA)n Simple_repeat Simple_repeat 2 50 0 264 135 40 0 chr6 96861401 96861475 -85553767 + (TA)n Simple_repeat Simple_repeat 2 78 0 23 0 0 0 chr6 96861686 96861709 -85553533 + AT_rich Low_complexity Low_complexity 1 23 0 1701 193 7 0 chr6 96861837 96862132 -85553110 + AluJb SINE Alu 2 298 -14 1803 158 3 13 chr6 96862488 96862798 -85552444 + AluJo SINE Alu 1 307 -5 390 309 70 30 chr6 96862896 96863268 -85551974 + L1ME3 LINE L1 3695 4081 -2065 3080 229 41 32 chr6 96863497 96864440 -85550802 + L1ME3 LINE L1 3997 4948 -1198 465 253 62 97 chr6 96864452 96864666 -85550576 + L1MC4a LINE L1 5721 5920 -1888 1725 198 3 0 chr6 96864666 96864964 -85550278 + AluJb SINE Alu 2 300 -12 465 253 62 97 chr6 96864964 96865089 -85550153 + L1MC4a LINE L1 5920 6048 -1760 1803 178 0 7 chr6 96865771 96866074 -85549168 - AluJo SINE Alu -10 302 2 205 288 0 0 chr6 96867782 96867841 -85547401 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1754 145 7 11 chr6 96868166 96868478 -85546764 + AluJb SINE Alu 1 311 0 783 267 161 3 chr6 96868548 96868889 -85546353 + L1MC4a LINE L1 5503 5897 -1911 2444 81 3 0 chr6 96868925 96869232 -85546010 - AluSg SINE Alu -2 308 1 336 189 0 0 chr6 96869288 96869362 -85545880 + (TA)n Simple_repeat Simple_repeat 2 75 0 328 294 39 29 chr6 96869950 96870052 -85545190 + MER91C DNA MER1_type 37 139 -1 787 138 0 36 chr6 96870182 96870320 -85544922 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr6 96870419 96870443 -85544799 + AT_rich Low_complexity Low_complexity 1 24 0 210 344 107 37 chr6 96871596 96871840 -85543402 + L2 LINE L2 2628 2888 -426 1809 142 7 42 chr6 96871841 96872151 -85543091 + AluSx SINE Alu 1 299 -13 27 0 0 0 chr6 96872530 96872557 -85542685 + AT_rich Low_complexity Low_complexity 1 27 0 260 359 76 0 chr6 96872623 96872715 -85542527 + L2 LINE L2 3148 3246 -26 256 203 127 0 chr6 96872915 96872994 -85542248 - HsTC2 DNA Tc2 -1809 89 1 340 281 128 41 chr6 96873086 96873380 -85541862 + L1ME3 LINE L1 5087 5419 -743 394 228 132 94 chr6 96873483 96874005 -85541237 + L1ME3 LINE L1 5387 5928 -234 396 206 147 7 chr6 96875251 96875387 -85539855 - L1ME3A LINE L1 0 6170 6016 22 0 0 0 chr6 96875844 96875866 -85539376 + AT_rich Low_complexity Low_complexity 1 22 0 194 133 44 44 chr6 96876288 96876333 -85538909 - L2 LINE L2 -534 2780 2736 589 176 59 7 chr6 96876428 96876564 -85538678 + L1MB7 LINE L1 6042 6184 0 22 0 0 0 chr6 96876570 96876592 -85538650 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 96877736 96877757 -85537485 + AT_rich Low_complexity Low_complexity 1 21 0 207 360 40 0 chr6 96877827 96877902 -85537340 + MER91B DNA MER1_type 1 78 -112 246 156 0 0 chr6 96877909 96877954 -85537288 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 190 315 157 0 chr6 96878084 96878173 -85537069 - MER5B DNA MER1_type -6 172 70 2354 74 3 0 chr6 96878602 96878899 -85536343 + AluSg SINE Alu 1 298 -12 1784 116 30 59 chr6 96879297 96879600 -85535642 - AluSx SINE Alu -13 299 6 23 0 0 0 chr6 96880037 96880060 -85535182 + AT_rich Low_complexity Low_complexity 1 23 0 219 351 30 65 chr6 96880438 96880774 -85534468 - L2 LINE L2 -2789 525 202 189 195 0 0 chr6 96880874 96880915 -85534327 + A-rich Low_complexity Low_complexity 1 41 0 25 51 0 0 chr6 96880928 96880967 -85534275 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr6 96881793 96881814 -85533428 + (CA)n Simple_repeat Simple_repeat 2 22 0 262 283 38 85 chr6 96882756 96882862 -85532380 + L2 LINE L2 3203 3303 -10 414 293 98 46 chr6 96882863 96883273 -85531969 + L1ME4a LINE L1 5676 6106 -15 28 29 0 0 chr6 96883595 96883630 -85531612 + AT_rich Low_complexity Low_complexity 1 35 0 227 337 61 41 chr6 96883655 96883753 -85531489 - L2 LINE L2 -35 3278 3179 649 193 108 75 chr6 96883885 96884097 -85531145 - MIR SINE MIR -1 261 43 229 362 23 40 chr6 96884192 96884366 -85530876 - L2 LINE L2 -336 2977 2807 1008 170 0 0 chr6 96884371 96884530 -85530712 - FRAM SINE Alu -6 160 2 404 276 39 28 chr6 96884621 96884802 -85530440 - LTR33A LTR ERVL -18 505 323 311 272 48 12 chr6 96885177 96885308 -85529934 - LTR33A LTR ERVL -343 178 50 428 315 123 37 chr6 96885343 96885667 -85529575 - L2 LINE L2 -564 2750 2399 650 219 8 0 chr6 96886068 96886187 -85529055 + AluSq/x SINE Alu 1 120 -193 3235 193 68 7 chr6 96887446 96888062 -85527180 + MER21B LTR ERV1 1 654 -209 329 254 58 110 chr6 96889913 96890020 -85525222 + MIR SINE MIR 73 169 -93 2488 154 42 4 chr6 96890020 96890494 -85524748 + L1MB3 LINE L1 5690 6181 -2 329 254 58 110 chr6 96890494 96890559 -85524683 + MIR SINE MIR 169 236 -26 252 154 0 0 chr6 96890637 96890689 -85524553 + (CTA)n Simple_repeat Simple_repeat 2 53 0 23 78 0 0 chr6 96891276 96891327 -85523915 + AT_rich Low_complexity Low_complexity 1 51 0 277 292 14 0 chr6 96892266 96892338 -85522904 + MIR SINE MIR 73 145 -63 741 198 123 0 chr6 96892355 96892517 -85522725 + MER5A DNA MER1_type 4 188 -1 2104 133 0 0 chr6 96892578 96892872 -85522370 + AluSx SINE Alu 1 294 -18 322 138 7 0 chr6 96943200 96943252 -85471990 + FLAM_A SINE Alu 84 129 -4 281 170 21 0 chr6 96943421 96943468 -85471774 - MER46C DNA MER2_type 0 338 291 328 248 80 16 chr6 96943511 96943636 -85471606 - L1MC5 LINE L1 -32 7929 7797 1182 152 5 42 chr6 96943735 96943952 -85471290 - MER2 DNA MER2_type -134 211 3 23 0 0 0 chr6 96943973 96943996 -85471246 + AT_rich Low_complexity Low_complexity 1 23 0 767 182 8 0 chr6 96943996 96944117 -85471125 - FLAM_A SINE Alu -11 122 1 663 102 0 124 chr6 96944125 96944262 -85470980 - L1MA5 LINE L1 -2 6298 6179 851 274 102 33 chr6 96944265 96944448 -85470794 - L1MC5 LINE L1 -185 7776 7607 2228 67 0 8 chr6 96944448 96944715 -85470527 - AluY SINE Alu -19 292 28 851 274 102 33 chr6 96944715 96945134 -85470108 - L1MC5 LINE L1 -354 7607 7260 516 257 79 82 chr6 96945129 96945432 -85469810 - L1ME LINE L1 -343 5778 5477 * 322 321 85 33 chr6 96946143 96946355 -85468887 - L1ME LINE L1 -633 5488 5266 794 187 0 8 chr6 96946415 96946538 -85468704 - FLAM_A SINE Alu -11 122 1 1631 204 17 0 chr6 96946641 96946930 -85468312 - AluJo SINE Alu -14 298 5 401 235 0 0 chr6 96947092 96947173 -85468069 + MIR SINE MIR 57 137 -125 1953 138 0 7 chr6 96947235 96947524 -85467718 + AluJb SINE Alu 14 300 -12 193 314 0 43 chr6 96947574 96947644 -85467598 - MER5A DNA MER1_type 0 189 123 971 158 32 0 chr6 96947649 96947807 -85467435 + FAM SINE Alu 6 168 -17 362 319 9 18 chr6 96947811 96947924 -85467318 - MER5A DNA MER1_type -58 131 20 26 0 0 0 chr6 96948453 96948479 -85466763 + AT_rich Low_complexity Low_complexity 1 26 0 500 311 54 39 chr6 96948560 96948789 -85466453 + MIR SINE MIR 25 262 0 2170 122 0 25 chr6 96949154 96949294 -85465948 + AluSx SINE Alu 1 143 -169 2311 99 3 0 chr6 96949294 96949598 -85465644 + AluSp SINE Alu 1 305 -8 2170 122 0 25 chr6 96949598 96949776 -85465466 + AluSx SINE Alu 143 311 -1 1804 159 0 24 chr6 96949836 96950131 -85465111 + AluJo SINE Alu 1 288 -24 26 30 0 0 chr6 96950131 96950164 -85465078 + AT_rich Low_complexity Low_complexity 1 33 0 389 227 59 50 chr6 96950335 96950454 -85464788 + L2 LINE L2 3185 3304 -9 297 223 125 27 chr6 96950456 96950616 -85464626 + L1ME2 LINE L1 5743 5916 -248 256 138 0 35 chr6 96951698 96951756 -85463486 + (TA)n Simple_repeat Simple_repeat 1 56 0 312 129 16 0 chr6 96951758 96951820 -85463422 - L1MCa LINE L1 -4358 2068 2006 254 326 0 0 chr6 96951813 96951902 -85463340 + L1MC4 LINE L1 6614 6702 -1340 * 267 272 0 22 chr6 96951909 96952001 -85463241 + L1MC4 LINE L1 6614 6703 -1339 318 200 0 82 chr6 96952031 96952141 -85463101 - L1MC4 LINE L1 -1339 6703 6603 24 0 0 0 chr6 96952145 96952169 -85463073 + AT_rich Low_complexity Low_complexity 1 24 0 473 164 0 0 chr6 96952302 96952369 -85462873 + AluJ/FLAM SINE Alu 2 68 -244 22 0 0 0 chr6 96952395 96952417 -85462825 + AT_rich Low_complexity Low_complexity 1 22 0 1068 152 136 0 chr6 96952872 96953070 -85462172 - MER46A DNA MER2_type -11 225 1 388 233 141 43 chr6 96952943 96953106 -85462136 + MER46A DNA MER2_type 1 179 -57 * 423 303 110 24 chr6 96953118 96953455 -85461787 + L1MC4a LINE L1 5812 6177 -1631 549 84 0 0 chr6 96953643 96953714 -85461528 + MER11B LTR ERVK 1 71 -1165 4095 136 203 23 chr6 96953715 96954584 -85460658 + MER11B LTR ERVK 208 1232 -4 2123 149 16 25 chr6 96955037 96955405 -85459837 - L1MA4A LINE L1 -3 6300 5936 811 199 8 15 chr6 96955405 96955536 -85459706 - FRAM SINE Alu -25 151 22 14419 171 62 32 chr6 96955537 96955938 -85459304 - L1MB2 LINE L1 -218 6655 6267 1489 199 6 45 chr6 96955938 96956249 -85458993 - AluJo SINE Alu -13 299 1 14419 171 62 32 chr6 96956249 96956555 -85458687 - L1MB2 LINE L1 -606 6267 5972 1554 173 103 0 chr6 96956555 96956827 -85458415 - AluJo SINE Alu -12 300 1 14419 171 62 32 chr6 96956827 96957345 -85457897 - L1MB2 LINE L1 -901 5972 5471 844 177 0 0 chr6 96957345 96957469 -85457773 + FLAM_C SINE Alu 1 124 -9 14419 171 62 32 chr6 96957469 96957826 -85457416 - L1MB2 LINE L1 -1402 5471 5126 1242 229 6 44 chr6 96957826 96958145 -85457097 - AluJo SINE Alu -5 307 1 14419 171 62 32 chr6 96958145 96958974 -85456268 - L1MB2 LINE L1 -1747 5126 4323 2027 125 3 10 chr6 96958974 96959271 -85455971 + AluSp SINE Alu 1 295 -18 14419 171 62 32 chr6 96959271 96961683 -85453559 - L1MB2 LINE L1 -2550 4323 1985 1841 122 31 17 chr6 96961683 96961970 -85453272 - AluJo SINE Alu -21 291 1 2112 143 0 9 chr6 96961977 96962292 -85452950 - AluSx SINE Alu 0 312 1 14419 171 62 32 chr6 96962292 96962523 -85452719 - L1MB2 LINE L1 -4893 1980 1382 1071 215 88 35 chr6 96962577 96962917 -85452325 + L1MD2 LINE L1 5999 6356 -3 2013 151 0 0 chr6 96963190 96963481 -85451761 - AluSx SINE Alu -21 291 1 1026 50 0 0 chr6 96963579 96963698 -85451544 - AluY SINE Alu -14 297 179 1046 146 22 43 chr6 96963833 96964018 -85451224 - AluJo SINE Alu -111 201 21 1896 147 7 3 chr6 96964298 96964584 -85450658 - AluJb SINE Alu -25 287 1 2853 215 39 9 chr6 96964706 96965375 -85449867 + L2 LINE L2 1888 2576 -738 432 168 0 203 chr6 96965394 96965591 -85449651 - L2 LINE L2 -1 3312 3156 617 332 143 15 chr6 96965653 96966051 -85449191 + L2 LINE L2 978 1426 -1888 677 258 91 18 chr6 96966053 96966274 -85448968 - MIR SINE MIR -1 261 25 478 280 103 60 chr6 96967201 96967551 -85447691 + L2 LINE L2 1830 2194 -1120 758 302 102 25 chr6 96967557 96967961 -85447281 + MLT1J2 LTR MaLR 3 437 -13 3688 142 18 2 chr6 96967968 96968531 -85446711 + Tigger1 DNA MER2_type 24 595 -1823 6622 62 22 53 chr6 96968539 96971092 -85444150 + SVA Other Other 1 1434 0 9075 106 35 75 chr6 96971094 96971172 -85444070 + Tigger1 DNA MER2_type 583 663 -1755 2282 82 13 20 chr6 96971172 96971475 -85443767 - AluSg SINE Alu -9 301 1 9075 106 35 75 chr6 96971475 96972599 -85442643 + Tigger1 DNA MER2_type 663 1830 -588 1023 196 0 0 chr6 96972599 96972762 -85442480 + FRAM SINE Alu 1 163 -3 2184 135 0 0 chr6 96972768 96973072 -85442170 - AluSx SINE Alu -8 304 1 9075 106 35 75 chr6 96973072 96973437 -85441805 + Tigger1 DNA MER2_type 1835 2095 -323 16344 155 45 29 chr6 96973438 96976674 -85438568 + L1PB2 LINE L1 136 3317 -3550 2117 125 0 47 chr6 96976674 96976993 -85438249 + AluSx SINE Alu 1 304 -8 16344 155 45 29 chr6 96976993 96977184 -85438058 + L1PB2 LINE L1 3317 3503 -3364 2237 101 3 3 chr6 96977184 96977480 -85437762 + AluSg SINE Alu 3 298 -12 16344 155 45 29 chr6 96977480 96977679 -85437563 + L1PB2 LINE L1 3503 3697 -3170 2236 97 17 10 chr6 96977679 96977978 -85437264 + AluSx SINE Alu 6 306 -6 16344 155 45 29 chr6 96977978 96978670 -85436572 + L1PB2 LINE L1 3697 4376 -2491 2113 128 20 0 chr6 96978670 96978974 -85436268 + AluSx SINE Alu 1 310 -2 16344 155 45 29 chr6 96978974 96981277 -85433965 + L1PB2 LINE L1 4376 6867 0 439 322 99 48 chr6 96981324 96981780 -85433462 + L2 LINE L2 2363 2841 -473 216 250 150 0 chr6 96982123 96982183 -85433059 + L2 LINE L2 3240 3308 -5 186 43 0 0 chr6 96982194 96982217 -85433025 + (CACCAT)n Simple_repeat Simple_repeat 5 27 0 225 256 0 0 chr6 96982221 96982264 -85432978 - AluJ/monomer SINE Alu -277 43 1 1051 90 0 0 chr6 96982365 96982498 -85432744 + AluSq/x SINE Alu 1 133 -180 236 98 0 24 chr6 96982498 96982539 -85432703 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 3365 75 13 40 chr6 96982842 96983233 -85432009 + MLT2A1 LTR ERVL 1 380 -64 252 86 0 0 chr6 96983233 96983268 -85431974 + (TG)n Simple_repeat Simple_repeat 2 36 0 3365 75 13 40 chr6 96983268 96983330 -85431912 + MLT2A1 LTR ERVL 380 442 -2 1226 103 0 0 chr6 96983354 96983510 -85431732 - AluSg/x SINE Alu -16 296 141 288 136 91 0 chr6 96983511 96983577 -85431665 - L1M LINE L1 -776 5386 5315 2493 174 77 50 chr6 96983600 96984220 -85431022 + L1ME1 LINE L1 5527 6163 -3 910 126 0 15 chr6 96984263 96984398 -85430844 + AluJ SINE Alu 1 133 -179 1476 80 11 0 chr6 96984404 96984592 -85430650 + AluSx SINE Alu 1 190 -122 482 83 0 0 chr6 96984592 96984652 -85430590 + AluSx SINE Alu 224 283 -27 522 151 23 0 chr6 96984684 96984770 -85430472 + AluJ SINE Alu 123 210 -102 219 146 0 0 chr6 96985655 96985696 -85429546 + (CCCCG)n Simple_repeat Simple_repeat 4 44 0 994 163 150 26 chr6 96987501 96987734 -85427508 - AluJb SINE Alu -20 292 31 1864 175 61 9 chr6 96987734 96988060 -85427182 + MER61A LTR ERV1 1 343 0 1355 156 86 14 chr6 96988062 96988559 -85426683 + MER61A-int LTR ERV1 3 571 -4646 * 7920 109 45 48 chr6 96988535 96988622 -85426620 + MER61A-int LTR ERV1 1396 1482 -3533 1962 101 91 0 chr6 96988622 96988898 -85426344 + AluSp SINE Alu 1 301 -12 2315 110 7 3 chr6 96988908 96989216 -85426026 + AluSx SINE Alu 1 309 -3 7920 109 45 48 chr6 96989216 96990215 -85425027 + MER61A-int LTR ERV1 1491 2492 -2523 2253 122 3 3 chr6 96990215 96990527 -85424715 - AluSx SINE Alu 0 312 1 7920 109 45 48 chr6 96990527 96991007 -85424235 + MER61A-int LTR ERV1 2492 3908 -1107 7698 62 130 37 chr6 96991007 96992165 -85423077 - MER11A LTR ERVK 0 1266 1 15528 85 35 19 chr6 96992165 96994312 -85420930 + MER61A-int LTR ERV1 3031 5210 -7 250 143 41 0 chr6 96994501 96994516 -85420726 - Alu SINE Alu -249 52 39 2104 170 15 6 chr6 96994516 96994852 -85420390 + MER61A LTR ERV1 5 343 0 250 143 41 0 chr6 96994852 96994885 -85420357 - Alu SINE Alu -262 39 2 365 220 10 80 chr6 96994885 96994985 -85420257 + MER67C LTR ERV1 137 229 -481 367 159 63 0 chr6 96994985 96995077 -85420165 - FLAM_C SINE Alu 0 144 49 2073 191 74 17 chr6 96995079 96995541 -85419701 + MER67C LTR ERV1 223 710 0 239 239 141 14 chr6 96996158 96996229 -85419013 + MER69A DNA AcHobo 29 108 -69 1772 205 40 55 chr6 96996308 96996354 -85418888 + MLT1C LTR MaLR 1 46 -421 1912 132 0 53 chr6 96996354 96996672 -85418570 + AluJb SINE Alu 1 301 -11 1772 205 40 55 chr6 96996672 96997099 -85418143 + MLT1C LTR MaLR 46 467 0 766 215 41 12 chr6 96997496 96997668 -85417574 - MLT1C LTR MaLR -3 464 288 2605 115 33 70 chr6 96997710 96997928 -85417314 + MER65A LTR ERV1 1 195 -250 2012 110 4 0 chr6 96997928 96998201 -85417041 + AluSx SINE Alu 1 274 -38 2605 115 33 70 chr6 96998201 96998442 -85416800 + MER65A LTR ERV1 195 443 -2 404 111 42 14 chr6 96998576 96998648 -85416594 + MER84 LTR ERVI 1 74 -433 3317 125 28 26 chr6 96998648 96999092 -85416150 + MER84 LTR ERV1 2 449 -58 1800 124 15 4 chr6 96999092 96999359 -85415883 - AluSx SINE Alu -7 305 36 3317 125 28 26 chr6 96999359 96999419 -85415823 + MER84 LTR ERV1 449 507 0 254 261 117 64 chr6 96999515 96999662 -85415580 + L1M4 LINE L1 4793 4960 -1186 2378 84 3 3 chr6 96999662 96999961 -85415281 + AluSp SINE Alu 2 300 -13 254 261 117 64 chr6 96999961 97000062 -85415180 + L1M4 LINE L1 4960 5054 -1092 23 0 0 0 chr6 97000068 97000091 -85415151 + AT_rich Low_complexity Low_complexity 1 23 0 2165 116 0 0 chr6 97000092 97000385 -85414857 - L1PB3 LINE L1 -4 6150 5858 872 128 0 23 chr6 97000385 97000518 -85414724 + AluJb SINE Alu 3 132 -180 32 26 0 0 chr6 97000519 97000558 -85414684 + AT_rich Low_complexity Low_complexity 1 39 0 6946 136 17 41 chr6 97000558 97001124 -85414118 - L1PB3 LINE L1 -286 5868 5290 1988 136 11 0 chr6 97001124 97001411 -85413831 - AluJo SINE Alu -22 290 1 6946 136 17 41 chr6 97001411 97002735 -85412507 - L1PB3 LINE L1 -864 5290 3997 23 33 0 0 chr6 97002735 97002765 -85412477 + AT_rich Low_complexity Low_complexity 1 30 0 741 121 0 135 chr6 97002765 97002906 -85412336 - FLAM_C SINE Alu -19 124 3 1387 173 19 4 chr6 97002906 97003172 -85412070 - L1PB3 LINE L1 -2142 4004 3735 1721 63 15 0 chr6 97003421 97003689 -85411553 - AluSc SINE Alu 0 341 71 2105 114 31 7 chr6 97003765 97004055 -85411187 - AluSx SINE Alu -15 297 1 188 271 62 0 chr6 97004521 97004569 -85410673 - L2 LINE L2 -837 2477 2427 22 0 0 0 chr6 97005091 97005113 -85410129 + AT_rich Low_complexity Low_complexity 1 22 0 201 147 0 0 chr6 97005182 97005216 -85410026 + (CATA)n Simple_repeat Simple_repeat 3 36 0 2014 110 21 7 chr6 97005222 97005504 -85409738 - AluSx SINE Alu -26 286 1 499 285 23 0 chr6 97005504 97005634 -85409608 - MIR SINE MIR -76 186 54 197 292 71 35 chr6 97005664 97005777 -85409465 + MIR SINE MIR 37 153 -55 421 232 206 26 chr6 97005785 97005940 -85409302 - MER5A DNA MER1_type -2 187 5 180 270 135 48 chr6 97006527 97006653 -85408589 - MIR SINE MIR -50 212 76 468 143 5 8 chr6 97006775 97006994 -85408248 + AluJo SINE Alu 1 292 -20 348 254 64 9 chr6 97007374 97007484 -85407758 - L2 LINE L2 0 3313 3198 685 226 175 6 chr6 97007665 97007842 -85407400 + MER63A DNA MER1_type 4 210 0 221 197 28 42 chr6 97007920 97007991 -85407251 + GA-rich Low_complexity Low_complexity 3 72 0 253 313 0 0 chr6 97008166 97008233 -85407009 + L2 LINE L2 3209 3275 -38 945 138 0 14 chr6 97008433 97008578 -85406664 + FLAM_C SINE Alu 1 143 0 2420 93 3 0 chr6 97008584 97008894 -85406348 + AluSp SINE Alu 1 311 -2 36 62 0 0 chr6 97009029 97009093 -85406149 + AT_rich Low_complexity Low_complexity 1 64 0 662 189 0 0 chr6 97009137 97009243 -85405999 + L2 LINE L2 3208 3313 0 646 252 83 14 chr6 97009264 97009482 -85405760 - MIR SINE MIR -12 250 18 1905 153 3 3 chr6 97009509 97009810 -85405432 - AluJo SINE Alu -11 301 1 1081 226 9 0 chr6 97009929 97010141 -85405101 + MIR SINE MIR 3 216 -46 235 355 0 0 chr6 97010193 97010286 -85404956 + L2 LINE L2 3209 3301 -12 2242 129 0 0 chr6 97010470 97010772 -85404470 - AluSx SINE Alu -9 303 2 2946 117 22 20 chr6 97011677 97012080 -85403162 - MER65A LTR ERV1 0 445 39 251 50 50 0 chr6 97012080 97012120 -85403122 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2946 117 22 20 chr6 97012120 97012160 -85403082 - MER65A LTR ERV1 -406 39 1 622 156 117 16 chr6 97012249 97012377 -85402865 + MER5B DNA MER1_type 4 144 -34 865 219 6 0 chr6 97012379 97012548 -85402694 + FRAM SINE Alu 1 170 -6 210 289 0 0 chr6 97012548 97012593 -85402649 - MER5B DNA MER1_type -133 45 1 2482 93 0 0 chr6 97012596 97012907 -85402335 + AluSp SINE Alu 1 311 -2 659 229 0 0 chr6 97012932 97013041 -85402201 + FLAM_C SINE Alu 2 110 -33 288 273 86 14 chr6 97013408 97013547 -85401695 + MIR SINE MIR 100 248 -14 1971 144 0 25 chr6 97013659 97014158 -85401084 + AluSx SINE Alu 1 312 0 1275 197 83 97 chr6 97014237 97014488 -85400754 - MER2 DNA MER2_type 0 345 99 915 164 0 8 chr6 97014488 97014622 -85400620 - FLAM_A SINE Alu 0 133 1 1275 197 83 97 chr6 97014622 97014720 -85400522 - MER2 DNA MER2_type -246 99 1 1418 187 22 0 chr6 97015248 97015473 -85399769 + MER21B LTR ERV1 5 234 -629 1808 210 69 52 chr6 97015927 97016105 -85399137 - L1M4 LINE L1 -1200 4946 4773 1580 134 55 12 chr6 97016105 97016358 -85398884 - AluJo SINE Alu -16 296 33 1808 210 69 52 chr6 97016358 97016755 -85398487 - L1M4 LINE L1 -1373 4773 4361 897 242 57 86 chr6 97016766 97016884 -85398358 - L1M4 LINE L1 -3413 2733 2613 2409 73 20 0 chr6 97016884 97017185 -85398057 - AluSp SINE Alu -6 307 1 897 242 57 86 chr6 97017185 97017366 -85397876 - L1M4 LINE L1 -3533 2613 2447 1862 158 3 7 chr6 97017366 97017670 -85397572 + AluJb SINE Alu 1 303 -9 897 242 57 86 chr6 97017670 97017774 -85397468 - L1M4 LINE L1 -3699 2447 2341 1586 166 36 23 chr6 97017830 97018160 -85397082 + LTR49-int LTR ERV1 1372 2164 -4099 1871 179 0 10 chr6 97018168 97018480 -85396762 + AluJb SINE Alu 1 309 -3 4588 184 32 61 chr6 97018490 97018738 -85396504 + LTR49-int LTR ERV1 751 1005 -5326 1783 183 20 10 chr6 97018738 97019044 -85396198 - AluJb SINE Alu -1 311 3 4588 184 32 61 chr6 97019044 97019570 -85395672 + LTR49-int LTR ERV1 1005 1545 -4786 189 0 0 0 chr6 97019570 97019591 -85395651 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2039 117 4 4 chr6 97019591 97019872 -85395370 - AluSq SINE Alu -32 281 1 4588 184 32 61 chr6 97019872 97020151 -85395091 + LTR49-int LTR ERV1 1543 2658 -3673 255 254 68 0 chr6 97020151 97020210 -85395032 + MER31A LTR ERV1 35 97 -388 1160 166 19 94 chr6 97020210 97020441 -85394801 + LTR49-int LTR ERV1 2679 2883 -3448 630 246 8 22 chr6 97020441 97020575 -85394667 + FLAM_A SINE Alu 1 132 -1 1160 166 19 94 chr6 97020575 97020651 -85394591 + LTR49-int LTR ERV1 2883 2963 -3368 2162 143 0 0 chr6 97020665 97020966 -85394276 - AluSx SINE Alu -10 302 2 1796 161 21 4 chr6 97020976 97021255 -85393987 - AluJo SINE Alu -25 287 4 493 171 225 27 chr6 97021282 97021393 -85393849 - FLAM_A SINE Alu 0 133 1 2046 179 18 35 chr6 97021397 97021794 -85393448 + LTR49-int LTR ERV1 2951 3340 -2991 1259 180 32 73 chr6 97021851 97021975 -85393267 + LTR49-int LTR ERV1 2622 2750 -2130 1635 152 106 0 chr6 97021975 97022239 -85393003 + AluSx SINE Alu 1 292 -20 1259 180 32 73 chr6 97022239 97022496 -85392746 + LTR49-int LTR ERV1 2750 2963 -1917 771 181 0 0 chr6 97022606 97022722 -85392520 + FLAM_C SINE Alu 3 118 -25 689 197 81 142 chr6 97022740 97023100 -85392142 + LTR49-int LTR ERV1 3184 3521 -1359 1420 241 20 13 chr6 97023100 97023399 -85391843 - AluJb SINE Alu 0 302 2 567 117 100 75 chr6 97023751 97023871 -85391371 + MER4D-int LTR ERV1 3118 4384 -1883 835 192 45 106 chr6 97023912 97024139 -85391103 + MER4D-int LTR ERV1 4567 4806 -1982 1926 144 11 0 chr6 97024139 97024423 -85390819 - AluJo SINE Alu -25 287 1 835 192 45 106 chr6 97024423 97024464 -85390778 + MER4D-int LTR ERV1 4806 5247 -1541 1435 188 52 4 chr6 97024465 97024736 -85390506 - AluJo SINE Alu -7 305 22 5832 149 88 55 chr6 97024879 97025477 -85389765 + MER4D-int LTR ERV1 4801 5378 -953 2460 148 87 0 chr6 97025477 97025869 -85389373 + MSTA LTR MaLR 1 426 -2 1667 141 31 45 chr6 97025869 97026160 -85389082 + AluJo SINE Alu 10 296 -16 5832 149 88 55 chr6 97026160 97026172 -85389070 + MER4D-int LTR ERV1 5378 5388 -943 4174 153 106 55 chr6 97026172 97026267 -85388975 + MER4D LTR ERV1 1 90 -813 2103 144 0 3 chr6 97026267 97026580 -85388662 + AluSx SINE Alu 1 312 0 4174 153 106 55 chr6 97026580 97026718 -85388524 + MER4D LTR ERV1 90 219 -684 1848 151 3 36 chr6 97026718 97027023 -85388219 - AluSx SINE Alu -17 295 1 4174 153 106 55 chr6 97027023 97027358 -85387884 + MER4D LTR ERV1 219 535 -368 1912 101 0 8 chr6 97027358 97027616 -85387626 - AluSc SINE Alu 0 309 54 4174 153 106 55 chr6 97027616 97027758 -85387484 + MER4D LTR ERV1 535 668 -235 2336 79 14 0 chr6 97027758 97028048 -85387194 + AluSp SINE Alu 1 294 -19 4174 153 106 55 chr6 97028048 97028193 -85387049 + MER4D LTR ERV1 668 903 0 5832 149 88 55 chr6 97028193 97028403 -85386839 + MER4D-int LTR ERV1 5388 5590 -741 1917 148 0 30 chr6 97028403 97028708 -85386534 + AluJb SINE Alu 1 296 -16 5832 149 88 55 chr6 97028708 97029153 -85386089 + MER4D-int LTR ERV1 5590 6111 -220 531 139 0 0 chr6 97029153 97029232 -85386010 - MER41A LTR ERV1 0 554 476 3421 126 36 9 chr6 97029239 97029788 -85385454 + MER50 LTR ERV1 8 571 -163 1295 145 40 0 chr6 97029789 97029989 -85385253 - AluSx SINE Alu -4 306 99 392 74 0 0 chr6 97029998 97030052 -85385190 - MER50 LTR ERV1 -548 186 133 657 96 0 113 chr6 97030052 97030167 -85385075 - AluSx SINE Alu -210 103 2 1091 111 0 7 chr6 97030168 97030321 -85384921 + MER50 LTR ERV1 560 711 -23 * 3595 129 5 18 chr6 97030320 97030886 -85384356 - MER41B LTR ERV1 -73 562 4 1241 220 122 95 chr6 97031052 97031538 -85383704 + LTR48B LTR ERV1 4 512 -132 4531 107 37 3 chr6 97031538 97032129 -85383113 + LTR9 LTR ERV1 2 612 0 1241 220 122 95 chr6 97032129 97032266 -85382976 + LTR48B LTR ERV1 512 644 0 509 165 121 0 chr6 97032268 97032359 -85382883 + LTR9-int LTR ERV1 1 102 -6229 1193 189 0 0 chr6 97032409 97032610 -85382632 + AluJb SINE Alu 85 285 -27 442 152 0 43 chr6 97032626 97032718 -85382524 + MER57A-int LTR ERV1 7450 7537 0 2409 158 7 27 chr6 97032734 97033145 -85382097 + MER57A LTR ERV1 1 403 0 236 252 61 53 chr6 97033771 97033902 -85381340 + MER65B LTR ERV1 325 456 -75 2100 166 43 45 chr6 97033968 97034130 -85381112 + LTR54 LTR ERV1 67 228 -282 1609 181 4 0 chr6 97034130 97034400 -85380842 - AluJb SINE Alu -26 286 16 2100 166 43 45 chr6 97034400 97034682 -85380560 + LTR54 LTR ERV1 228 510 0 22 0 0 0 chr6 97034687 97034709 -85380533 + AT_rich Low_complexity Low_complexity 1 22 0 418 275 25 100 chr6 97034783 97034873 -85380369 + L2 LINE L2 2733 2828 -444 1874 154 0 0 chr6 97034873 97035153 -85380089 + AluSx SINE Alu 1 280 -32 418 275 25 100 chr6 97035153 97035447 -85379795 + L2 LINE L2 2828 3080 -192 1987 125 62 0 chr6 97035639 97035927 -85379315 + AluSq SINE Alu 1 306 -7 1522 199 3 44 chr6 97035980 97036119 -85379123 + AluJo SINE Alu 8 151 -161 2133 137 0 6 chr6 97036119 97036433 -85378809 + AluSx SINE Alu 1 312 0 1522 199 3 44 chr6 97036433 97036610 -85378632 + AluJo SINE Alu 151 311 -1 3206 166 20 56 chr6 97036621 97036945 -85378297 - L1P LINE L1 -800 5346 5012 276 91 0 0 chr6 97036945 97036989 -85378253 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3206 166 20 56 chr6 97036989 97037010 -85378232 - L1P LINE L1 -1134 5012 4992 1937 142 0 0 chr6 97037010 97037285 -85377957 - AluSx SINE Alu -37 275 1 3206 166 20 56 chr6 97037285 97037647 -85377595 - L1P LINE L1 -1154 4992 4664 4264 115 25 8 chr6 97037647 97038288 -85376954 + L1PA15 LINE L1 5362 6013 -152 970 79 0 0 chr6 97038289 97038416 -85376826 + AluSp/q SINE Alu 185 311 -2 6960 118 25 18 chr6 97038417 97039749 -85375493 + L1MA2 LINE L1 4955 6297 -7 962 141 0 0 chr6 97039774 97039916 -85375326 + L1PA15 LINE L1 6023 6164 -1 333 0 0 0 chr6 97040108 97040145 -85375097 + (CA)n Simple_repeat Simple_repeat 1 37 0 336 239 123 7 chr6 97040533 97040671 -85374571 + L2 LINE L2 3160 3313 0 2152 136 0 7 chr6 97040674 97040983 -85374259 + AluSx SINE Alu 1 307 -5 1929 164 0 0 chr6 97041170 97041463 -85373779 - AluJb SINE Alu -19 293 1 274 312 52 52 chr6 97041644 97041817 -85373425 + MLT1L LTR MaLR 29 201 -414 526 169 0 5 chr6 97041838 97042047 -85373195 + AluJ SINE Alu 2 306 0 242 200 15 31 chr6 97042435 97042500 -85372742 + MLT1L LTR MaLR 545 608 -7 226 274 123 28 chr6 97042781 97042887 -85372355 - L2 LINE L2 -200 3072 2957 278 219 137 0 chr6 97042911 97042984 -85372258 + MIR SINE MIR 91 173 -89 2290 112 3 0 chr6 97043086 97043389 -85371853 - AluSp SINE Alu -9 304 1 1954 149 3 0 chr6 97045372 97045673 -85369569 - AluJb SINE Alu -10 302 1 636 229 160 97 chr6 97045703 97046161 -85369081 - MLT1H1 LTR MaLR -8 541 17 376 302 104 16 chr6 97046193 97046385 -85368857 - L2 LINE L2 -260 3012 2804 523 233 0 42 chr6 97046495 97046615 -85368627 - MLT1K LTR MaLR -62 526 412 2083 121 0 24 chr6 97046620 97046781 -85368461 - AluSx SINE Alu -21 291 139 2317 81 7 7 chr6 97046781 97047076 -85368166 - AluSc SINE Alu -14 295 1 2083 121 0 24 chr6 97047076 97047212 -85368030 - AluSx SINE Alu -173 139 1 1741 152 48 3 chr6 97047228 97047517 -85367725 - AluJo SINE Alu -9 303 2 489 280 88 60 chr6 97047753 97047916 -85367326 + MIR SINE MIR 2 176 -86 1863 150 3 10 chr6 97047916 97048210 -85367032 - AluJb SINE Alu -20 292 1 489 280 88 60 chr6 97048210 97048296 -85366946 + MIR SINE MIR 176 258 -4 2299 157 109 11 chr6 97048347 97048807 -85366435 + MLT1D LTR MaLR 1 505 0 30 27 0 0 chr6 97048895 97048932 -85366310 + AT_rich Low_complexity Low_complexity 1 37 0 603 73 0 42 chr6 97048955 97049051 -85366191 - AluJb SINE Alu -3 309 218 1571 142 0 0 chr6 97049096 97049315 -85365927 - AluJb SINE Alu -93 219 1 1951 158 7 3 chr6 97049366 97049669 -85365573 - AluJb SINE Alu -4 308 5 2171 118 37 0 chr6 97050535 97050831 -85364411 + AluSq SINE Alu 1 307 -6 22 99 0 0 chr6 97052102 97052173 -85363069 + AT_rich Low_complexity Low_complexity 1 71 0 2983 130 44 113 chr6 97052322 97052745 -85362497 + L1MB7 LINE L1 5539 5899 -285 650 209 0 15 chr6 97052745 97052879 -85362363 + FLAM_C SINE Alu 2 133 0 2983 130 44 113 chr6 97052879 97053138 -85362104 + L1MB7 LINE L1 5899 6174 -10 2097 124 0 19 chr6 97053230 97053537 -85361705 + AluSx SINE Alu 1 301 -11 798 294 56 41 chr6 97053691 97053824 -85361418 - L1MC4a LINE L1 -215 5969 5839 2396 100 0 0 chr6 97053824 97054125 -85361117 - AluSg SINE Alu -9 301 1 2372 80 0 7 chr6 97054125 97054425 -85360817 - AluSq SINE Alu -15 298 1 798 294 56 41 chr6 97054425 97054741 -85360501 - L1MC4a LINE L1 -344 5840 5511 2347 102 7 0 chr6 97054817 97055111 -85360131 - AluSx SINE Alu -16 296 1 180 0 0 0 chr6 97055370 97055390 -85359852 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2319 69 7 7 chr6 97055862 97056150 -85359092 + AluSc SINE Alu 2 289 -20 738 162 141 0 chr6 97056230 97056372 -85358870 + AluSg/x SINE Alu 138 299 -13 335 301 57 60 chr6 97056385 97056684 -85358558 - L2 LINE L2 -587 2727 2430 206 129 0 0 chr6 97057246 97057277 -85357965 - MIR SINE MIR -171 91 61 488 172 45 52 chr6 97058273 97058407 -85356835 - L1MB8 LINE L1 0 6178 6046 5209 160 26 31 chr6 97058469 97058570 -85356672 + L1M1 LINE L1 15 115 -7450 2171 80 0 4 chr6 97058570 97058833 -85356409 + AluY SINE Alu 1 262 -49 5209 160 26 31 chr6 97058833 97059652 -85355590 + L1M1 LINE L1 115 930 -6635 2905 79 5 0 chr6 97059649 97060028 -85355214 - THE1C-int LTR MaLR -1199 381 1 * 2445 102 41 8 chr6 97060028 97060391 -85354851 - THE1C LTR MaLR 0 375 1 1134 249 189 11 chr6 97060391 97060840 -85354402 + L2 LINE L2 1151 1679 -1635 719 98 0 0 chr6 97060854 97060956 -85354286 - AluY SINE Alu -3 308 207 1747 257 29 83 chr6 97061056 97061232 -85354010 + L2 LINE L2 2208 2392 -921 1581 174 102 72 chr6 97061232 97061662 -85353580 - LTR47B LTR ERVL 0 443 1 1747 257 29 83 chr6 97061662 97061971 -85353271 + L2 LINE L2 2392 2716 -597 180 0 0 0 chr6 97061971 97061991 -85353251 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1747 257 29 83 chr6 97061991 97062010 -85353232 + L2 LINE L2 2716 2734 -579 1524 168 0 39 chr6 97062010 97062295 -85352947 - AluJo SINE Alu -38 274 1 1747 257 29 83 chr6 97062295 97062468 -85352774 + L2 LINE L2 2734 2915 -398 2222 102 7 0 chr6 97062468 97062762 -85352480 - AluSx SINE Alu -16 296 1 1747 257 29 83 chr6 97062762 97063084 -85352158 + L2 LINE L2 2915 3136 -177 2019 128 16 16 chr6 97063084 97063389 -85351853 + AluJb SINE Alu 1 305 -7 1747 257 29 83 chr6 97063389 97063522 -85351720 + L2 LINE L2 3136 3275 -38 855 233 295 61 chr6 97063517 97063961 -85351281 - L2 LINE L2 -30 3283 2944 * 2060 44 0 8 chr6 97063961 97064213 -85351029 + L1PA5 LINE L1 5901 6150 -4 855 233 295 61 chr6 97064213 97064398 -85350844 - L2 LINE L2 -369 2944 2804 258 32 0 0 chr6 97064398 97064429 -85350813 + (TA)n Simple_repeat Simple_repeat 1 31 0 855 233 295 61 chr6 97064429 97064905 -85350337 - L2 LINE L2 -509 2804 1833 288 273 13 0 chr6 97064934 97065011 -85350231 + MIR SINE MIR 75 152 -110 294 186 0 0 chr6 97065012 97065055 -85350187 - LTR8A LTR ERV1 0 727 685 1597 175 8 0 chr6 97065079 97065342 -85349900 + AluJo SINE Alu 42 306 -6 1667 153 60 7 chr6 97065427 97065709 -85349533 - AluJo SINE Alu -15 297 1 2211 97 50 0 chr6 97065734 97066032 -85349210 + AluSp SINE Alu 1 313 0 2264 119 0 3 chr6 97066085 97066397 -85348845 - AluSx SINE Alu -1 311 1 565 173 10 0 chr6 97066430 97066534 -85348708 - FLAM_A SINE Alu 0 142 38 2260 108 7 0 chr6 97067177 97067473 -85347769 + AluSx SINE Alu 1 298 -14 2399 93 6 6 chr6 97067877 97068188 -85347054 - AluSx SINE Alu -1 311 1 1191 149 0 6 chr6 97068426 97068607 -85346635 + AluJb SINE Alu 133 312 0 731 125 52 59 chr6 97068616 97068752 -85346490 - AluJo SINE Alu -176 136 2 27 0 0 0 chr6 97068755 97068782 -85346460 + AT_rich Low_complexity Low_complexity 1 27 0 389 328 53 11 chr6 97068820 97069009 -85346233 - MIR SINE MIR -63 199 3 209 97 0 0 chr6 97069714 97069745 -85345497 + L2 LINE L2 3283 3313 0 1921 153 7 3 chr6 97069863 97070151 -85345091 + AluJo SINE Alu 1 289 -23 734 176 0 22 chr6 97071375 97071511 -85343731 - FLAM_C SINE Alu 0 143 11 374 171 136 0 chr6 97071567 97071655 -85343587 + L2 LINE L2 3214 3313 0 574 175 71 8 chr6 97071870 97071996 -85343246 - Charlie1 DNA MER1_type -1 2760 2627 * 616 147 225 0 chr6 97071992 97072121 -85343121 - Charlie1 DNA MER1_type -261 2500 2343 741 161 0 0 chr6 97072422 97072540 -85342702 + FLAM_C SINE Alu 19 136 -7 228 250 11 98 chr6 97073314 97073406 -85341836 + L2 LINE L2 3189 3272 0 2093 112 3 24 chr6 97073422 97073603 -85341639 - AluSx SINE Alu -22 290 116 1901 141 58 30 chr6 97073603 97073966 -85341276 - THE1C LTR MaLR 0 375 3 2093 112 3 24 chr6 97073966 97074080 -85341162 - AluSx SINE Alu -196 116 1 2033 130 0 31 chr6 97074522 97074844 -85340398 + AluSx SINE Alu 1 312 0 2217 121 0 0 chr6 97075132 97075429 -85339813 + AluSx SINE Alu 1 297 -15 5129 140 20 19 chr6 97075444 97075472 -85339770 - L1MB7 LINE L1 0 6184 6158 2201 98 9 52 chr6 97075472 97075798 -85339444 - AluSq SINE Alu -1 312 1 5129 140 20 19 chr6 97075798 97076750 -85338492 - L1MB7 LINE L1 -26 6158 5208 2159 135 0 0 chr6 97076753 97077050 -85338192 - AluSx SINE Alu -15 297 1 2406 110 0 0 chr6 97077091 97077400 -85337842 - AluSx SINE Alu -3 309 1 366 167 0 42 chr6 97077845 97077917 -85337325 - AluJ/FRAM SINE Alu -3 299 231 469 158 42 0 chr6 97078104 97078199 -85337043 + L1M4 LINE L1 5237 5335 -811 1971 159 38 9 chr6 97078199 97078544 -85336698 - MLT1A1 LTR MaLR 0 365 11 27 0 0 0 chr6 97078618 97078645 -85336597 + AT_rich Low_complexity Low_complexity 1 27 0 874 151 0 0 chr6 97078660 97078786 -85336456 + AluJb SINE Alu 174 299 -13 247 191 60 119 chr6 97078801 97078969 -85336273 - HAL1 LINE L1 -39 2468 2311 261 0 0 0 chr6 97078969 97078998 -85336244 + (CA)n Simple_repeat Simple_repeat 2 30 0 234 0 0 0 chr6 97078997 97079023 -85336219 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 2265 103 7 0 chr6 97079023 97079314 -85335928 - AluSx SINE Alu -19 293 1 1060 98 0 0 chr6 97079318 97079451 -85335791 - AluSq/x SINE Alu -179 133 1 2159 252 75 48 chr6 97079453 97079721 -85335521 - HAL1 LINE L1 -186 2321 2062 534 292 50 81 chr6 97079721 97080157 -85335085 + MER34 LTR ERV1 1 418 -124 2125 123 10 0 chr6 97080157 97080450 -85334792 + AluSx SINE Alu 1 296 -16 534 292 50 81 chr6 97080450 97080572 -85334670 + MER34 LTR ERV1 418 542 0 2159 252 75 48 chr6 97080572 97081156 -85334086 - HAL1 LINE L1 -445 2062 1446 641 213 7 33 chr6 97081163 97081313 -85333929 + AluJo SINE Alu 2 147 -165 1884 131 55 0 chr6 97082416 97082691 -85332551 - AluSx SINE Alu -22 290 1 589 183 0 17 chr6 97082703 97082823 -85332419 - FAM SINE Alu 0 185 68 1723 154 55 0 chr6 97082853 97083125 -85332117 + AluJo SINE Alu 6 292 -20 1624 202 3 10 chr6 97083129 97083261 -85331981 + AluJo SINE Alu 3 134 -178 2240 112 0 16 chr6 97083261 97083574 -85331668 + AluSx SINE Alu 1 308 -4 1624 202 3 10 chr6 97083574 97083748 -85331494 + AluJo SINE Alu 134 307 -5 1481 173 63 7 chr6 97083952 97084236 -85331006 - AluJb SINE Alu -12 300 1 2203 125 0 25 chr6 97084319 97084639 -85330603 + AluSx SINE Alu 1 312 0 725 149 8 8 chr6 97084900 97085021 -85330221 + Tigger7 DNA MER2_type 1 121 -612 32 0 0 0 chr6 97085021 97085053 -85330189 + AT_rich Low_complexity Low_complexity 1 32 0 267 31 0 0 chr6 97085053 97085085 -85330157 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 2112 137 0 3 chr6 97085085 97085385 -85329857 - AluSx SINE Alu -13 299 1 1403 92 0 0 chr6 97085420 97085604 -85329638 - U2 snRNA snRNA -4 184 1 823 252 70 30 chr6 97085631 97085960 -85329282 - HAL1 LINE L1 -1099 1408 1067 435 168 47 0 chr6 97085960 97086067 -85329175 + CT-rich Low_complexity Low_complexity 2 113 0 1945 156 10 3 chr6 97086091 97086399 -85328843 - AluJo SINE Alu -2 310 1 2714 65 0 0 chr6 97086419 97086757 -85328485 - L1PA5 LINE L1 -1 6153 5816 3329 115 110 146 chr6 97086757 97088213 -85327029 + pTR5 LTR ERV1 744 2436 -2 1989 26 0 0 chr6 97088218 97088446 -85326796 - L1P2 LINE L1 -334 5820 5593 320 122 128 223 chr6 97088467 97088615 -85326627 - MLT1H LTR MaLR -8 541 408 259 235 66 22 chr6 97088654 97088790 -85326452 - HAL1 LINE L1 -1467 1040 899 1070 161 86 5 chr6 97088890 97089076 -85326166 + LTR29 LTR ERV1 1 201 -421 809 174 122 20 chr6 97089110 97089369 -85325873 + LTR49 LTR ERV1 313 595 0 1330 158 73 4 chr6 97089432 97089666 -85325576 - AluJb SINE Alu -7 305 56 1981 139 17 0 chr6 97090125 97090412 -85324830 + AluSx SINE Alu 2 293 -19 1743 168 10 26 chr6 97091097 97091401 -85323841 - AluJb SINE Alu -13 299 1 1738 182 7 3 chr6 97091441 97091749 -85323493 + AluJb SINE Alu 1 309 -3 586 194 28 0 chr6 97091749 97091893 -85323349 + GA-rich Low_complexity Low_complexity 1 148 0 223 143 0 0 chr6 97091894 97091929 -85323313 + (GA)n Simple_repeat Simple_repeat 2 36 0 2096 133 0 3 chr6 97091954 97092248 -85322994 + AluSx SINE Alu 4 296 -16 2151 120 0 7 chr6 97092252 97092543 -85322699 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr6 97092546 97092568 -85322674 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 417 153 0 0 chr6 97092757 97092829 -85322413 + GA-rich Low_complexity Low_complexity 1 72 0 428 191 0 0 chr6 97093579 97093647 -85321595 - AluS SINE Alu -11 300 233 915 78 23 0 chr6 97144021 97144149 -85271093 - FLAM_C SINE Alu -12 131 1 623 158 103 7 chr6 97144220 97144366 -85270876 - L2 LINE L2 -3 3310 3151 230 310 0 0 chr6 97144537 97144608 -85270634 - MER94 DNA DNA -62 72 2 182 314 151 58 chr6 97144690 97145034 -85270208 - L2 LINE L2 -44 3228 2853 802 279 77 8 chr6 97145082 97145329 -85269913 - MLT1C LTR MaLR 0 467 204 198 71 0 0 chr6 97145330 97145358 -85269884 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 732 149 68 0 chr6 97145340 97145468 -85269774 - FLAM_C SINE Alu -16 127 10 1557 123 44 23 chr6 97145468 97145772 -85269470 - THE1B LTR MaLR -2 353 1 581 222 105 29 chr6 97145796 97145967 -85269275 - MLT1C LTR MaLR -321 184 1 1508 174 10 51 chr6 97146115 97146426 -85268816 + AluJo SINE Alu 1 298 -14 21 36 0 0 chr6 97147331 97147359 -85267883 + AT_rich Low_complexity Low_complexity 1 28 0 192 254 0 73 chr6 97148712 97148767 -85266475 - L2 LINE L2 -18 3254 3204 328 153 126 27 chr6 97148808 97148919 -85266323 + MER113 DNA MER1_type? 1 122 -399 1834 163 10 7 chr6 97148971 97149271 -85265971 + AluSx SINE Alu 1 301 -11 1710 176 17 7 chr6 97149290 97149591 -85265651 + AluJb SINE Alu 1 304 -8 543 206 84 8 chr6 97149600 97149731 -85265511 + MER113 DNA MER1_type? 240 380 -141 462 209 22 22 chr6 97149744 97149835 -85265407 + AluJo SINE Alu 85 175 -137 1649 188 7 10 chr6 97150244 97150569 -85264673 - AluJo SINE Alu 0 324 1 226 336 52 0 chr6 97150580 97150696 -85264546 - L2 LINE L2 -575 2739 2618 2518 52 0 0 chr6 97150733 97151023 -85264219 + AluY SINE Alu 3 292 -19 2247 103 0 7 chr6 97151031 97151331 -85263911 + AluSq SINE Alu 1 298 -15 2001 142 3 0 chr6 97151336 97151631 -85263611 + AluSq SINE Alu 1 296 -17 1804 169 3 0 chr6 97151645 97151935 -85263307 + AluJb SINE Alu 1 291 -21 2193 91 45 0 chr6 97151935 97152222 -85263020 + AluSg1 SINE Alu 1 300 -9 854 208 28 63 chr6 97152238 97152662 -85262580 + L1MC5 LINE L1 6636 7100 -861 180 0 0 0 chr6 97152662 97152682 -85262560 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 854 208 28 63 chr6 97152682 97152863 -85262379 + L1MC5 LINE L1 7100 7286 -675 2105 128 7 0 chr6 97152865 97153161 -85262081 - AluSx SINE Alu -14 298 1 585 196 10 0 chr6 97153198 97153245 -85261997 + MER3 DNA MER1_type 1 48 -161 366 137 192 0 chr6 97153245 97153318 -85261924 - MER3 DNA MER1_type 0 209 123 3672 56 34 19 chr6 97153323 97154386 -85260856 + MER11A LTR ERVK 1 1266 0 308 167 0 76 chr6 97154386 97154440 -85260802 - MER3 DNA MER1_type -96 113 65 374 250 47 14 chr6 97154447 97154595 -85260647 + L1MC5 LINE L1 7342 7494 -467 383 188 167 21 chr6 97154794 97154890 -85260352 + L1ME3 LINE L1 5781 5890 -272 786 169 7 42 chr6 97154892 97155034 -85260208 + FRAM SINE Alu 22 158 -18 360 125 0 0 chr6 97155044 97155100 -85260142 + MSTC LTR MaLR 373 428 0 1663 158 20 20 chr6 97155122 97155426 -85259816 - AluJo SINE Alu -8 304 1 824 185 0 8 chr6 97155439 97155569 -85259673 - FLAM_C SINE Alu -14 129 1 1661 181 0 46 chr6 97155606 97155932 -85259310 - AluJb SINE Alu -1 311 1 1036 228 39 29 chr6 97155938 97156162 -85259080 - L1ME2 LINE L1 -1 6163 5934 871 168 0 15 chr6 97156162 97156293 -85258949 - FLAM_C SINE Alu -4 129 1 1036 228 39 29 chr6 97156293 97156349 -85258893 - L1ME2 LINE L1 -230 5934 5880 985 175 6 35 chr6 97156364 97156535 -85258707 - FRAM SINE Alu 0 166 1 2150 122 48 31 chr6 97156536 97156888 -85258354 - MSTC LTR MaLR -70 358 1 779 175 0 17 chr6 97156939 97157059 -85258183 + FLAM_C SINE Alu 1 118 -15 28 0 0 0 chr6 97157059 97157087 -85258155 + AT_rich Low_complexity Low_complexity 1 28 0 2205 92 28 0 chr6 97158103 97158387 -85256855 + AluSx SINE Alu 5 296 -16 24 32 0 0 chr6 97158421 97158452 -85256790 + AT_rich Low_complexity Low_complexity 1 31 0 1737 151 17 44 chr6 97158476 97158799 -85256443 + AluJo SINE Alu 1 312 0 24 0 0 0 chr6 97158853 97158877 -85256365 + AT_rich Low_complexity Low_complexity 1 24 0 256 366 60 0 chr6 97158950 97159084 -85256158 + LTR16C LTR ERVL 258 399 -92 856 253 85 88 chr6 97159092 97159491 -85255751 + MLT1J LTR MaLR 105 502 -9 2417 179 65 4 chr6 97159508 97159984 -85255258 - LTR22 LTR ERVK -4 505 1 328 247 65 0 chr6 97160163 97160256 -85254986 - MER69 DNA AcHobo 0 2526 2428 1159 237 155 20 chr6 97160258 97160659 -85254583 - LTR16A1 LTR ERVL -2 455 1 1721 164 83 30 chr6 97160739 97161112 -85254130 - MER69 DNA AcHobo -257 2269 1877 2338 237 36 11 chr6 97161172 97161725 -85253517 - MER69 DNA AcHobo -439 787 221 2509 51 0 3 chr6 97161931 97162224 -85253018 + AluY SINE Alu 1 292 -19 883 163 8 0 chr6 97162777 97162906 -85252336 + FLAM_C SINE Alu 1 130 -3 24 0 0 0 chr6 97163207 97163231 -85252011 + AT_rich Low_complexity Low_complexity 1 24 0 771 152 7 76 chr6 97163615 97163760 -85251482 - AluJo SINE Alu -176 136 2 1650 132 0 56 chr6 97164139 97164438 -85250804 + AluSx SINE Alu 36 319 0 1236 191 76 22 chr6 97164634 97164911 -85250331 - AluJo SINE Alu -20 292 1 784 119 24 48 chr6 97164914 97165040 -85250202 - AluJo/FLAM SINE Alu -179 133 11 337 184 145 0 chr6 97165040 97165116 -85250126 - MLT1B LTR MaLR -262 128 42 831 184 7 0 chr6 97165119 97165255 -85249987 + AluJb SINE Alu 157 293 -19 964 144 0 69 chr6 97165601 97165774 -85249468 - AluJo SINE Alu -141 171 11 2276 110 0 16 chr6 97166885 97167202 -85248040 - AluSx SINE Alu 0 312 1 1627 174 18 3 chr6 97167344 97167514 -85247728 - AluJo SINE Alu -16 296 119 207 0 0 0 chr6 97167514 97167537 -85247705 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1627 174 18 3 chr6 97167537 97167648 -85247594 - AluJo SINE Alu -193 119 11 2390 52 0 3 chr6 97168187 97168494 -85246748 - AluY SINE Alu 0 306 1 719 224 147 35 chr6 97170003 97170235 -85245007 + MIR SINE MIR 2 259 -3 28 0 0 0 chr6 97171509 97171537 -85243705 + GC_rich Low_complexity Low_complexity 1 28 0 1790 79 0 43 chr6 97173186 97173440 -85241802 + AluSx SINE Alu 51 293 -19 1901 113 21 3 chr6 97173545 97173827 -85241415 - AluSx SINE Alu -25 287 1 434 259 46 58 chr6 97174236 97174410 -85240832 + MIR SINE MIR 27 198 -64 2341 117 0 0 chr6 97176080 97176388 -85238854 - AluSx SINE Alu -4 308 1 1823 104 0 0 chr6 97176420 97176651 -85238591 + AluSx SINE Alu 1 231 -81 2249 98 13 7 chr6 97176793 97177100 -85238142 + AluSq SINE Alu 1 309 -4 2065 125 17 0 chr6 97177152 97177448 -85237794 - AluSx SINE Alu -11 301 1 1587 150 17 37 chr6 97177727 97178027 -85237215 + AluJb SINE Alu 2 295 -17 26 30 0 0 chr6 97179161 97179194 -85236048 + AT_rich Low_complexity Low_complexity 1 33 0 2017 135 7 14 chr6 97179526 97179822 -85235420 - AluSx SINE Alu -18 294 1 22 0 0 0 chr6 97179834 97179856 -85235386 + AT_rich Low_complexity Low_complexity 1 22 0 1915 124 0 67 chr6 97181179 97181510 -85233732 - AluJb SINE Alu -3 309 1 1089 156 0 17 chr6 97181620 97181799 -85233443 - AluSg/x SINE Alu -3 309 134 2318 100 0 3 chr6 97181799 97182099 -85233143 - AluSg SINE Alu -5 305 7 405 304 44 0 chr6 97182260 97182395 -85232847 + MIR SINE MIR 77 217 -45 24 0 0 0 chr6 97182875 97182899 -85232343 + AT_rich Low_complexity Low_complexity 1 24 0 295 210 74 25 chr6 97182922 97183003 -85232239 - Charlie7 DNA MER1_type -1923 689 605 23 0 0 0 chr6 97183003 97183026 -85232216 + AT_rich Low_complexity Low_complexity 1 23 0 852 136 0 0 chr6 97183027 97183152 -85232090 - FLAM_C SINE Alu -18 125 1 926 212 282 10 chr6 97183152 97183549 -85231693 - Charlie7 DNA MER1_type -1995 617 113 229 320 10 52 chr6 97183569 97183644 -85231598 + MER5A DNA MER1_type 1 73 -116 2221 107 3 10 chr6 97183644 97183944 -85231298 + AluSx SINE Alu 1 298 -14 229 320 10 52 chr6 97183944 97183965 -85231277 + MER5A DNA MER1_type 73 93 -96 439 337 166 35 chr6 97184928 97185584 -85229658 - L2 LINE L2 -887 2427 1686 209 255 25 127 chr6 97185989 97186146 -85229096 + L2 LINE L2 3164 3304 -9 379 275 160 30 chr6 97186180 97186368 -85228874 + MIR SINE MIR 55 262 0 248 311 27 27 chr6 97186397 97186471 -85228771 + L2 LINE L2 3235 3308 -5 241 313 236 10 chr6 97186710 97186905 -85228337 - L2 LINE L2 -215 3057 2819 248 293 68 53 chr6 97186906 97187039 -85228203 - L2 LINE L2 -637 2677 2543 565 310 114 30 chr6 97187039 97187468 -85227774 - L2 LINE L2 -905 2409 1945 2340 104 0 0 chr6 97188689 97188988 -85226254 - AluSx SINE Alu -13 299 1 982 167 123 133 chr6 97189266 97189566 -85225676 - AluJo SINE Alu -5 297 1 228 67 0 0 chr6 97190844 97190874 -85224368 + (A)n Simple_repeat Simple_repeat 1 30 0 1278 161 139 22 chr6 97191898 97192171 -85223071 - AluJo SINE Alu -7 305 1 2834 7 0 0 chr6 97192226 97192528 -85222714 + AluY SINE Alu 1 302 -9 2024 101 25 4 chr6 97193026 97193303 -85221939 + AluSq SINE Alu 1 283 -30 234 0 0 0 chr6 97193303 97193329 -85221913 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2304 92 17 0 chr6 97193613 97193907 -85221335 + AluSx SINE Alu 1 299 -13 1806 170 0 10 chr6 97194032 97194343 -85220899 - AluJo SINE Alu -4 308 1 23 54 0 0 chr6 97194445 97194482 -85220760 + AT_rich Low_complexity Low_complexity 1 37 0 2709 159 41 118 chr6 97194508 97195256 -85219986 - LTR8 LTR ERV1 0 691 1 1685 161 33 39 chr6 97195279 97195639 -85219603 - L1PA16 LINE L1 -14 6152 5795 2193 113 0 28 chr6 97196367 97196685 -85218557 + AluSx SINE Alu 2 310 -2 244 188 0 87 chr6 97196760 97196829 -85218413 + L2 LINE L2 3251 3313 0 473 229 207 0 chr6 97196897 97197037 -85218205 - MER5A DNA MER1_type -12 177 9 2334 93 7 3 chr6 97197085 97197385 -85217857 + AluSx SINE Alu 1 301 -11 2297 101 0 22 chr6 97197852 97198168 -85217074 + AluSq SINE Alu 1 309 -4 1190 142 120 64 chr6 97198619 97198916 -85216326 - AluJo SINE Alu 0 313 2 2064 125 0 20 chr6 97199250 97199546 -85215696 - AluJb SINE Alu -22 290 1 288 179 0 15 chr6 97200344 97200411 -85214831 + MER5C DNA MER1_type 259 324 0 2204 114 0 26 chr6 97200627 97200935 -85214307 + AluSx SINE Alu 1 300 -12 2139 101 0 24 chr6 97200935 97201233 -85214009 + AluSq SINE Alu 1 291 -22 452 159 0 68 chr6 97201661 97201749 -85213493 + FLAM SINE Alu 45 126 -17 22 0 0 0 chr6 97201749 97201771 -85213471 + AT_rich Low_complexity Low_complexity 1 22 0 2207 147 42 21 chr6 97202275 97202655 -85212587 + MLT1B LTR MaLR 1 388 -2 1807 182 0 3 chr6 97202891 97203199 -85212043 + AluJb SINE Alu 1 307 -5 2248 107 0 28 chr6 97205125 97205444 -85209798 - AluSq SINE Alu -3 310 1 229 258 11 101 chr6 97206052 97206141 -85209101 - MIR SINE MIR -55 207 127 244 294 124 20 chr6 97206445 97206598 -85208644 + L2 LINE L2 2890 3058 -214 455 297 22 7 chr6 97207328 97207466 -85207776 - MER5A DNA MER1_type -1 188 49 235 268 32 96 chr6 97207358 97207515 -85207727 + MER5A DNA MER1_type 43 189 0 * 1675 155 49 14 chr6 97208230 97208514 -85206728 - AluJo SINE Alu -16 296 3 422 216 0 0 chr6 97208544 97208632 -85206610 + MER5A DNA MER1_type 18 105 -84 992 150 6 12 chr6 97208654 97208814 -85206428 + FRAM SINE Alu 1 159 -7 219 114 0 0 chr6 97209070 97209105 -85206137 + (A)n Simple_repeat Simple_repeat 1 35 0 2985 98 2 45 chr6 97209500 97209888 -85205354 + L1PB3 LINE L1 5706 6074 -80 2318 93 0 26 chr6 97209888 97210198 -85205044 + AluSx SINE Alu 1 302 -10 2985 98 2 45 chr6 97210198 97210257 -85204985 + L1PB3 LINE L1 6074 6134 -20 2058 139 26 0 chr6 97210811 97211113 -85204129 - AluSx SINE Alu -2 310 1 406 165 13 25 chr6 97211664 97211743 -85203499 - MER116 DNA Mariner 0 80 3 1637 188 48 41 chr6 97212148 97212542 -85202700 + MLT2C1 LTR ERVL 1 397 0 208 0 62 0 chr6 97213144 97213176 -85202066 + (TG)n Simple_repeat Simple_repeat 2 35 0 333 138 75 25 chr6 97213176 97213256 -85201986 - L1MB4 LINE L1 -13 6167 6084 21 0 0 0 chr6 97213270 97213291 -85201951 + AT_rich Low_complexity Low_complexity 1 21 0 4444 162 33 20 chr6 97213481 97213953 -85201289 - L1MB3 LINE L1 -108 6075 5611 1971 134 0 33 chr6 97213953 97214259 -85200983 - AluJo SINE Alu -16 296 1 4444 162 33 20 chr6 97214259 97214754 -85200488 - L1MB3 LINE L1 -572 5611 5097 264 30 0 0 chr6 97214974 97215007 -85200235 + (TG)n Simple_repeat Simple_repeat 2 34 0 4270 8 0 0 chr6 97215140 97215610 -85199632 + L1PA2 LINE L1 5686 6155 0 1946 105 69 4 chr6 97215719 97215995 -85199247 + AluSg SINE Alu 1 294 -16 1231 114 0 0 chr6 97217833 97217999 -85197243 + AluSg/x SINE Alu 139 304 -8 2175 121 16 0 chr6 97218488 97218795 -85196447 - AluSx SINE Alu 0 312 1 187 330 99 33 chr6 97219035 97219126 -85196116 + L2 LINE L2 3136 3232 -40 545 236 0 0 chr6 97219503 97219609 -85195633 - MER63C DNA MER1_type 0 932 827 6743 175 54 14 chr6 97219642 97221115 -85194127 + L1M3f LINE L1 5 1545 -4257 2141 125 3 10 chr6 97221115 97221412 -85193830 + AluSx SINE Alu 1 295 -17 6743 175 54 14 chr6 97221412 97221614 -85193628 + L1M3f LINE L1 1545 1737 -4065 2682 213 110 7 chr6 97221615 97222316 -85192926 - MER63C DNA MER1_type -137 793 1 1672 183 0 21 chr6 97222425 97222710 -85192532 + AluJb SINE Alu 1 279 -33 782 69 0 30 chr6 97222710 97222841 -85192401 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 1036 228 43 83 chr6 97224484 97224835 -85190407 + LTR16C LTR ERVL 152 488 -3 219 279 190 38 chr6 97225064 97225222 -85190020 + MIR SINE MIR 13 194 -68 2145 128 0 41 chr6 97226178 97226498 -85188744 - AluSx SINE Alu -5 307 1 504 150 71 100 chr6 97227406 97227435 -85187807 - MER5B DNA MER1_type -36 142 114 2513 64 0 0 chr6 97227435 97227733 -85187509 + AluY SINE Alu 1 298 -13 504 150 71 100 chr6 97227733 97227843 -85187399 - MER5B DNA MER1_type -64 114 7 2066 121 7 3 chr6 97228213 97228530 -85186712 - AluSx SINE Alu 0 318 1 1611 155 12 59 chr6 97228629 97228951 -85186291 - AluJo SINE Alu -5 307 1 478 258 55 49 chr6 97229793 97229956 -85185286 + LTR33 LTR ERVL 86 249 -272 423 295 22 11 chr6 97230007 97230190 -85185052 + LTR33 LTR ERVL 337 521 0 190 290 16 0 chr6 97230379 97230441 -85184801 + L2 LINE L2 3250 3312 -1 723 244 86 10 chr6 97230972 97231181 -85184061 - MIR SINE MIR -8 254 30 187 260 20 0 chr6 97231288 97231338 -85183904 + L2 LINE L2 3257 3307 -6 220 252 72 86 chr6 97232311 97232450 -85182792 + L2 LINE L2 2923 3059 -213 1704 154 30 40 chr6 97232556 97232855 -85182387 - AluJo SINE Alu -16 296 1 1998 146 0 16 chr6 97233123 97233431 -85181811 - AluJb SINE Alu -8 304 2 749 164 72 0 chr6 97233600 97233752 -85181490 + MER5B DNA MER1_type 9 171 -7 251 208 183 29 chr6 97233834 97233972 -85181270 + MIR3 SINE MIR 35 194 -14 1852 201 17 29 chr6 97234342 97234761 -85180481 + MLT2D LTR ERVL 1 414 0 509 244 79 24 chr6 97235669 97235833 -85179409 + MIR SINE MIR 20 192 -70 349 208 39 0 chr6 97235839 97235916 -85179326 + MER116 DNA Mariner 1 80 0 323 266 130 13 chr6 97235959 97236113 -85179129 + MIR3 SINE MIR 22 193 -15 2067 154 3 0 chr6 97236120 97236431 -85178811 - AluJb SINE Alu 0 312 1 589 235 22 0 chr6 97236478 97236614 -85178628 + L2 LINE L2 3134 3272 0 262 314 7 128 chr6 97236719 97237015 -85178227 - L2 LINE L2 -99 3173 2914 218 317 155 15 chr6 97237313 97237584 -85177658 + L2 LINE L2 1722 2030 -1284 203 324 46 19 chr6 97237595 97237703 -85177539 + L2 LINE L2 3200 3310 -3 239 322 109 48 chr6 97237745 97238325 -85176917 + L2 LINE L2 2050 2664 -650 270 0 0 0 chr6 97238595 97238625 -85176617 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1634 163 25 21 chr6 97238627 97238909 -85176333 - AluJb SINE Alu -29 283 1 472 186 314 0 chr6 97239052 97239176 -85176066 + MER96 DNA MER1_type? 8 170 -5 518 213 80 84 chr6 97239325 97239611 -85175631 + L1ME4a LINE L1 5534 5818 -303 362 151 50 101 chr6 97239689 97239808 -85175434 + L1ME4a LINE L1 5954 6066 -55 1001 137 11 6 chr6 97239852 97240034 -85175208 - L1 LINE L1 -1810 4336 4154 2000 145 0 0 chr6 97240136 97240426 -85174816 + AluSc SINE Alu 7 296 -13 25742 44 5 0 chr6 97240435 97243602 -85171640 + L1P LINE L1 2195 5375 -771 1226 239 21 6 chr6 97243601 97243963 -85171279 - L1M1 LINE L1 -4241 3325 2659 * 14769 31 0 0 chr6 97244063 97246560 -85168682 + L1PA4 LINE L1 3659 6154 -1 291 191 16 16 chr6 97246562 97246625 -85168617 - MLT1G1 LTR MaLR -526 69 7 421 240 193 7 chr6 97246677 97246827 -85168415 + MER2 DNA MER2_type 168 345 0 9504 91 5 1 chr6 97247067 97249079 -85166163 - L1PA7 LINE L1 -17 6137 4120 25358 37 1 0 chr6 97249225 97252270 -85162972 + L1P LINE L1 2145 5193 -953 2557 127 6 4 chr6 97252459 97252968 -85162274 + L1MA7 LINE L1 4974 5482 -743 1233 152 24 33 chr6 97252969 97253179 -85162063 + AluJo SINE Alu 1 208 -104 4768 157 28 6 chr6 97253247 97254043 -85161199 + L1MA7 LINE L1 5473 6285 -6 22 35 0 0 chr6 97254043 97254072 -85161170 + AT_rich Low_complexity Low_complexity 1 29 0 192 298 35 0 chr6 97254635 97254692 -85160550 + MIR3 SINE MIR 118 176 -32 2157 223 39 122 chr6 97256260 97257210 -85158032 + MER31-int LTR ERV1 3186 4050 -886 2341 93 0 3 chr6 97257210 97257511 -85157731 + AluSq SINE Alu 1 300 -13 2157 223 39 122 chr6 97257511 97257562 -85157680 + MER31-int LTR ERV1 4050 4104 -832 406 181 43 141 chr6 97257744 97257986 -85157256 + LTR37A LTR ERV1 6 185 -241 723 154 0 8 chr6 97258015 97258145 -85157097 + LTR37A LTR ERV1 297 425 -1 2346 89 3 0 chr6 97258954 97259246 -85155996 - AluSp SINE Alu -20 293 1 1587 148 148 13 chr6 97259608 97259911 -85155331 - MER2 DNA MER2_type 0 344 1 409 276 215 48 chr6 97260158 97260470 -85154772 - MLT1J LTR MaLR -77 434 71 6103 125 19 25 chr6 97261279 97261994 -85153248 - L1PB1 LINE L1 0 6867 6150 2319 85 3 3 chr6 97261994 97262287 -85152955 - AluSc SINE Alu -16 293 1 2134 115 3 11 chr6 97262294 97262618 -85152624 - AluSx SINE Alu 0 322 1 6103 125 19 25 chr6 97262618 97263012 -85152230 - L1PB1 LINE L1 -723 6144 5762 2295 105 0 0 chr6 97263012 97263307 -85151935 - AluSg SINE Alu -15 295 1 6103 125 19 25 chr6 97263307 97263482 -85151760 - L1PB1 LINE L1 -1105 5762 5588 43843 31 22 1 chr6 97263490 97269514 -85145728 - L1PA2 LINE L1 0 6155 3 11318 194 16 2 chr6 97269538 97269993 -85145249 - L1PB1 LINE L1 -1276 5586 5139 195 42 0 0 chr6 97269993 97270017 -85145225 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 11318 194 16 2 chr6 97270017 97271839 -85143403 - L1PB1 LINE L1 -1723 5139 3277 4383 127 102 57 chr6 97271840 97273236 -85142006 - pTR5 LTR ERV1 -1 2437 66 15623 138 115 12 chr6 97273237 97273564 -85141678 - L1PB1 LINE L1 -3584 3278 2986 2205 77 3 21 chr6 97273564 97273850 -85141392 - AluSg SINE Alu -15 295 15 15623 138 115 12 chr6 97273850 97276499 -85138743 - L1PB1 LINE L1 -3876 2986 2 2079 186 42 7 chr6 97276532 97276989 -85138253 - L1M4 LINE L1 -1198 4948 4476 339 252 28 0 chr6 97277149 97277256 -85137986 + L2 LINE L2 2522 2631 -683 1798 175 44 3 chr6 97277279 97277576 -85137666 - AluJb SINE Alu -3 309 1 574 296 74 0 chr6 97277598 97277774 -85137468 + LTR50 LTR ERVL 2 190 -605 234 62 0 0 chr6 97277777 97277809 -85137433 + (T)n Simple_repeat Simple_repeat 1 32 0 205 311 92 17 chr6 97278307 97278426 -85136816 + L2 LINE L2 2723 2850 -464 1899 154 8 37 chr6 97278468 97278717 -85136525 + MLT2C1 LTR ERVL 1 239 -158 2378 84 0 0 chr6 97278717 97279014 -85136228 + AluY SINE Alu 1 297 -14 1899 154 8 37 chr6 97279014 97279115 -85136127 + MLT2C1 LTR ERVL 239 341 -56 333 242 0 0 chr6 97279439 97279505 -85135737 + L2 LINE L2 3248 3313 0 2328 91 0 10 chr6 97280075 97280373 -85134869 - AluSq SINE Alu -18 295 1 411 100 0 0 chr6 97280847 97280917 -85134325 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 367 331 11 43 chr6 97281391 97281575 -85133667 - MIR SINE MIR -39 223 46 653 229 102 19 chr6 97283512 97283717 -85131525 + MIR SINE MIR 1 222 -40 1725 166 62 39 chr6 97283736 97284091 -85131151 + MLT1A1 LTR MaLR 1 363 -2 295 214 31 71 chr6 97284183 97284281 -85130961 - MIR SINE MIR -50 212 119 5068 153 41 13 chr6 97284624 97285690 -85129552 + L1MB8 LINE L1 5091 6178 0 424 269 46 23 chr6 97285678 97285808 -85129434 + L1ME2 LINE L1 5584 5719 -450 * 28 29 0 0 chr6 97285812 97285847 -85129395 + AT_rich Low_complexity Low_complexity 1 35 0 1899 188 28 35 chr6 97285867 97286299 -85128943 + L1ME2 LINE L1 5727 6155 -9 2300 96 0 3 chr6 97286670 97286972 -85128270 - AluSx SINE Alu -11 301 1 2159 94 0 30 chr6 97287108 97287405 -85127837 + AluSx SINE Alu 10 297 -15 212 231 31 15 chr6 97287518 97287583 -85127659 + CT-rich Low_complexity Low_complexity 3 68 0 1621 184 66 7 chr6 97287613 97287901 -85127341 - AluJo SINE Alu -7 305 1 219 254 60 15 chr6 97287998 97288065 -85127177 - MIR SINE MIR -122 140 71 479 276 8 8 chr6 97288196 97288319 -85126923 - L2 LINE L2 0 3313 3191 1304 185 12 21 chr6 97289174 97289417 -85125825 - AluJo SINE Alu -17 295 55 367 186 82 41 chr6 97289465 97289562 -85125680 + MER5B DNA MER1_type 78 178 0 566 253 153 0 chr6 97289752 97289902 -85125340 + MER5A DNA MER1_type 9 181 -8 247 242 16 0 chr6 97292182 97292244 -85122998 + MLT1K LTR MaLR 509 571 -17 219 310 74 59 chr6 97292656 97292706 -85122536 - L3b LINE CR1 -268 1315 1267 579 253 42 0 chr6 97292706 97292872 -85122370 + MER104 DNA MER2_type 5 177 -3 219 310 74 59 chr6 97292872 97293024 -85122218 - L3b LINE CR1 -316 1267 1110 2289 94 3 3 chr6 97293381 97293678 -85121564 + AluSp SINE Alu 1 297 -16 545 207 17 17 chr6 97294020 97294136 -85121106 + MER3 DNA MER1_type 48 163 -46 1092 155 0 0 chr6 97294150 97294318 -85120924 - AluJo SINE Alu -25 287 120 393 89 36 0 chr6 97294318 97294374 -85120868 + MER3 DNA MER1_type 152 209 0 307 109 36 36 chr6 97294333 97294388 -85120854 - MER3 DNA MER1_type -119 90 36 * 1820 225 48 22 chr6 97294734 97295134 -85120108 + MER77 LTR ERV1 60 469 -136 201 175 0 70 chr6 97295279 97295336 -85119906 + L2 LINE L2 3261 3313 0 349 264 66 72 chr6 97296299 97296348 -85118894 - MIR3 SINE MIR -7 201 153 482 239 290 0 chr6 97296348 97296486 -85118756 + MER5B DNA MER1_type 1 178 0 349 264 66 72 chr6 97296486 97296603 -85118639 - MIR3 SINE MIR -55 153 36 1941 131 0 70 chr6 97296650 97296979 -85118263 + AluJo SINE Alu 1 306 -6 2338 109 0 0 chr6 97297719 97298030 -85117212 - AluSx SINE Alu -1 311 1 1848 156 3 10 chr6 97298119 97298433 -85116809 - AluJb SINE Alu 0 312 1 517 236 24 16 chr6 97298847 97298974 -85116268 - MER5A DNA MER1_type -1 188 61 5550 135 27 31 chr6 97299593 97299987 -85115255 + MER49 LTR ERV1 1 395 -528 1553 168 35 3 chr6 97299987 97300273 -85114969 + AluJo SINE Alu 6 300 -12 5550 135 27 31 chr6 97300273 97300805 -85114437 + MER49 LTR ERV1 395 923 0 26 0 0 0 chr6 97300927 97300953 -85114289 + AT_rich Low_complexity Low_complexity 1 26 0 294 93 0 0 chr6 97301108 97301151 -85114091 + MADE1 DNA Mariner 1 43 -37 2679 112 40 23 chr6 97301275 97301702 -85113540 + Tigger2a DNA MER2_type 1 434 0 274 119 34 0 chr6 97301702 97301746 -85113496 + (TATAG)n Simple_repeat Simple_repeat 3 51 -12 2361 83 0 0 chr6 97301746 97302048 -85113194 - AluSx SINE Alu -9 303 2 274 119 34 0 chr6 97302048 97302062 -85113180 + (TATAG)n Simple_repeat Simple_repeat 51 63 0 332 258 86 11 chr6 97302308 97302401 -85112841 - MIR SINE MIR -56 206 107 1333 124 0 44 chr6 97304288 97304513 -85110729 - AluJb SINE Alu -11 301 87 866 149 7 19 chr6 97304876 97305030 -85110212 - L1MB4 LINE L1 -56 6124 5973 1024 163 0 27 chr6 97305030 97305214 -85110028 - AluJo/FRAM SINE Alu 0 312 134 1787 100 0 0 chr6 97305214 97305455 -85109787 - AluSg/x SINE Alu 0 312 72 1935 144 3 7 chr6 97305510 97305809 -85109433 + AluJb SINE Alu 1 298 -14 460 224 41 59 chr6 97306495 97306665 -85108577 + LTR16A1 LTR ERVL 1 167 -290 21 82 0 0 chr6 97306893 97306942 -85108300 + AT_rich Low_complexity Low_complexity 1 49 0 292 336 18 27 chr6 97307016 97307126 -85108116 - L3 LINE CR1 -97 1480 1372 349 244 42 76 chr6 97307901 97308020 -85107222 + L2 LINE L2 3197 3311 -2 585 240 161 71 chr6 97308985 97309394 -85105848 - L2 LINE L2 -1 3312 2867 357 288 103 20 chr6 97309574 97309720 -85105522 + MER5A DNA MER1_type 13 170 -19 519 260 0 0 chr6 97310624 97310751 -85104491 + L1ME3A LINE L1 6039 6165 -5 2071 105 3 7 chr6 97311465 97311760 -85103482 - AluSx SINE Alu -18 294 1 1675 167 3 7 chr6 97312811 97313093 -85102149 + AluJb SINE Alu 1 281 -31 27 0 0 0 chr6 97313094 97313121 -85102121 + AT_rich Low_complexity Low_complexity 1 27 0 304 268 0 21 chr6 97313323 97313429 -85101813 + L1ME3A LINE L1 3760 3863 -2283 2142 113 0 0 chr6 97313502 97313795 -85101447 - AluSx SINE Alu -14 298 6 315 293 12 0 chr6 97314167 97314249 -85100993 + L1MC4a LINE L1 570 652 -5467 300 198 56 0 chr6 97314266 97314392 -85100850 + (TTATA)n Simple_repeat Simple_repeat 1 133 0 1402 263 84 15 chr6 97314605 97315260 -85099982 + L1MC4a LINE L1 3829 4528 -1601 2121 113 24 46 chr6 97315260 97315631 -85099611 + THE1C LTR MaLR 1 363 -12 438 237 40 13 chr6 97315637 97315789 -85099453 + L1MC4a LINE L1 5212 5367 -762 236 238 129 0 chr6 97315786 97315887 -85099355 + L1PA16 LINE L1 6053 6166 0 * 1301 244 144 80 chr6 97315862 97316660 -85098582 + L1ME3A LINE L1 5300 6156 -14 186 209 0 0 chr6 97317591 97317634 -85097608 + (TG)n Simple_repeat Simple_repeat 1 43 0 828 204 0 0 chr6 97317731 97317893 -85097349 - FRAM SINE Alu -10 166 5 728 252 24 38 chr6 97317935 97318145 -85097097 + MIR SINE MIR 43 249 -13 1788 141 18 0 chr6 97318162 97318438 -85096804 + AluSx SINE Alu 9 289 -23 486 120 0 0 chr6 97318438 97318513 -85096729 + (TA)n Simple_repeat Simple_repeat 1 75 0 224 278 0 0 chr6 97320325 97320379 -85094863 + (CA)n Simple_repeat Simple_repeat 1 54 0 241 292 26 9 chr6 97320975 97321088 -85094154 + MLT2E LTR ERVL 423 537 -91 318 233 78 33 chr6 97321270 97321451 -85093791 - L1MC/D LINE L1 -896 5463 5276 277 268 37 0 chr6 97321447 97321529 -85093713 - L1MC/D LINE L1 -2178 3968 3884 * 641 233 129 4 chr6 97321535 97321767 -85093475 + L1MC4a LINE L1 5632 5892 -1899 458 353 94 18 chr6 97321899 97322293 -85092949 + L3 LINE CR1 1004 1427 -150 1127 174 33 62 chr6 97322293 97322548 -85092694 + L1ME3 LINE L1 5895 6143 -19 1701 213 39 53 chr6 97322548 97323059 -85092183 + MLT1D LTR MaLR 2 505 0 1127 174 33 62 chr6 97323059 97323078 -85092164 + L1ME3 LINE L1 6143 6161 -1 608 223 32 19 chr6 97323756 97323913 -85091329 + MER5A DNA MER1_type 31 189 0 2122 172 33 0 chr6 97324397 97324793 -85090449 + L1MA9 LINE L1 5902 6310 -2 415 329 86 5 chr6 97325805 97326015 -85089227 - MIR SINE MIR -35 227 1 803 259 49 18 chr6 97326032 97326256 -85088986 - MIR SINE MIR 0 262 32 563 275 13 20 chr6 97326256 97326405 -85088837 + MLT1F1 LTR MaLR 2 149 -418 482 202 145 38 chr6 97326620 97326858 -85088384 + MLT1H LTR MaLR 324 593 -2 1389 175 54 27 chr6 97326872 97327169 -85088073 - AluJo SINE Alu -7 305 1 1859 139 83 44 chr6 97327956 97328316 -85086926 - MSTB2 LTR MaLR 0 457 84 1197 304 69 12 chr6 97328345 97328855 -85086387 - MER115 DNA AcHobo -96 597 59 914 269 77 38 chr6 97328884 97329275 -85085967 + LTR33 LTR ERVL 96 501 -20 342 293 94 0 chr6 97330221 97330327 -85084915 + L2 LINE L2 3138 3253 -19 484 73 0 29 chr6 97330498 97330566 -85084676 + L1M3 LINE L1 5532 5597 -583 328 158 20 129 chr6 97330574 97330675 -85084567 - L1MC4 LINE L1 -1339 6703 6614 426 116 2 94 chr6 97330687 97331110 -85084132 + (TA)n Simple_repeat Simple_repeat 1 384 0 3141 141 30 16 chr6 97331146 97331705 -85083537 + L1MB3 LINE L1 5610 6176 -7 1617 189 10 3 chr6 97331733 97332039 -85083203 + AluJb SINE Alu 1 308 -4 23 0 0 0 chr6 97332274 97332297 -85082945 + AT_rich Low_complexity Low_complexity 1 23 0 511 113 28 0 chr6 97332298 97332369 -85082873 - MER5B DNA MER1_type -45 133 61 1930 138 3 3 chr6 97332375 97332672 -85082570 - AluSx SINE Alu -15 297 1 7446 32 30 0 chr6 97332871 97334247 -85080995 - L1PA5 LINE L1 -4 6150 4756 1104 180 131 4 chr6 97335318 97335562 -85079680 + ORSL DNA AcHobo 1 275 0 649 207 46 52 chr6 97335625 97335799 -85079443 + MIR SINE MIR 86 258 -4 2078 103 14 7 chr6 97335799 97336089 -85079153 + AluSx SINE Alu 1 292 -20 445 250 65 8 chr6 97336600 97336724 -85078518 - MIR SINE MIR -54 208 78 1914 189 17 3 chr6 97336958 97337318 -85077924 + MLT1A1 LTR MaLR 1 365 0 6477 169 18 34 chr6 97338379 97338454 -85076788 + L1PA13 LINE L1 3229 3304 -2842 1819 152 38 0 chr6 97338454 97338744 -85076498 + AluSx SINE Alu 1 301 -11 6477 169 18 34 chr6 97338744 97339950 -85075292 + L1PA13 LINE L1 3304 4490 -1656 4368 142 19 50 chr6 97341651 97342514 -85072728 + L1PA13 LINE L1 4477 5366 -795 1993 103 12 82 chr6 97342514 97342845 -85072397 + AluSx SINE Alu 5 312 0 4368 142 19 50 chr6 97342845 97343302 -85071940 + L1PA13 LINE L1 5366 5757 -404 1545 163 4 0 chr6 97343302 97343553 -85071689 + AluSg SINE Alu 1 252 -58 4368 142 19 50 chr6 97343553 97343624 -85071618 + L1PA13 LINE L1 5757 5829 -332 713 127 23 21 chr6 97343624 97343851 -85071391 + AluJb SINE Alu 1 283 -29 1831 140 70 15 chr6 97343866 97344195 -85071047 + L1PA13 LINE L1 5815 6161 -2 212 31 62 0 chr6 97344212 97344244 -85070998 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1391 186 75 14 chr6 97344321 97344601 -85070641 + AluJo SINE Alu 1 297 -15 261 155 56 0 chr6 97345012 97345083 -85070159 + GA-rich Low_complexity Low_complexity 2 76 0 287 254 34 0 chr6 97345227 97345286 -85069956 + L2 LINE L2 3192 3252 -20 487 245 0 10 chr6 97345377 97345479 -85069763 + MER5B DNA MER1_type 4 104 -74 654 253 11 11 chr6 97345610 97345784 -85069458 - MER5B DNA MER1_type -3 175 2 2199 93 10 0 chr6 97346041 97346341 -85068901 - AluSx SINE Alu -9 303 1 696 253 51 0 chr6 97346512 97346690 -85068552 - MER3 DNA MER1_type 0 209 23 30 0 0 0 chr6 97346699 97346729 -85068513 + AT_rich Low_complexity Low_complexity 1 30 0 231 296 65 35 chr6 97346869 97347038 -85068204 + L2 LINE L2 590 763 -2551 314 300 197 35 chr6 97347067 97347377 -85067865 - L2 LINE L2 -20 3252 2893 198 318 0 54 chr6 97347584 97347732 -85067510 + L2 LINE L2 1611 1750 -1564 1590 160 81 19 chr6 97347794 97347992 -85067250 - L1MC1 LINE L1 0 6333 6108 1600 173 57 20 chr6 97347992 97348293 -85066949 - AluJo SINE Alu 0 312 1 1590 160 81 19 chr6 97348293 97348401 -85066841 - L1MC1 LINE L1 -225 6108 6008 552 287 135 17 chr6 97348594 97348890 -85066352 + L2 LINE L2 2015 2345 -969 203 387 20 13 chr6 97348968 97349118 -85066124 - L2 LINE L2 -438 2876 2726 306 308 69 2 chr6 97349982 97350163 -85065079 - MIR3 SINE MIR -55 153 4 222 272 155 10 chr6 97351332 97351435 -85063807 + MIR3 SINE MIR 38 155 -53 438 274 14 14 chr6 97351509 97351655 -85063587 - MER103 DNA DNA -19 147 2 185 217 33 67 chr6 97351700 97351760 -85063482 + MIR3 SINE MIR 144 201 -7 2253 89 14 0 chr6 97351861 97352165 -85063077 + AluSx SINE Alu 1 308 0 365 291 17 8 chr6 97352291 97352408 -85062834 + Charlie7 DNA MER1_type 2490 2607 -5 2270 95 14 3 chr6 97354665 97354960 -85060282 + AluSx SINE Alu 10 307 -5 1102 188 76 20 chr6 97355031 97355281 -85059961 - LTR48B LTR ERV1 0 644 381 1259 165 169 0 chr6 97355283 97355556 -85059686 - LTR48 LTR ERV1 -335 452 134 9600 179 14 29 chr6 97355556 97357554 -85057688 + L1PB4 LINE L1 2877 4845 -1301 4766 122 63 75 chr6 97357538 97357757 -85057485 + L1PB4 LINE L1 5058 5278 -878 * 183 42 0 0 chr6 97357757 97357781 -85057461 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4766 122 63 75 chr6 97357781 97358155 -85057087 + L1PB4 LINE L1 5278 5655 -501 2310 112 165 35 chr6 97358155 97358585 -85056657 + LTR19A LTR ERV1 1 486 0 4766 122 63 75 chr6 97358585 97358985 -85056257 + L1PB4 LINE L1 5655 6024 -132 2115 106 0 44 chr6 97358985 97359305 -85055937 + AluSx SINE Alu 1 306 -6 4766 122 63 75 chr6 97359305 97359434 -85055808 + L1PB4 LINE L1 6024 6153 -3 463 222 111 9 chr6 97359442 97359550 -85055692 - LTR48 LTR ERV1 -636 151 33 1998 213 98 71 chr6 97359585 97360286 -85054956 - MER72 LTR ERV1 0 722 3 1256 148 108 9 chr6 97360286 97360509 -85054733 - L1PB3 LINE L1 -7 6147 5903 * 3724 186 28 5 chr6 97360502 97360573 -85054669 + L1 LINE L1 4328 4396 -1750 284 0 0 27 chr6 97360573 97360610 -85054632 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 3724 186 28 5 chr6 97360610 97361303 -85053939 + L1 LINE L1 4396 5109 -1037 516 240 81 39 chr6 97361455 97361601 -85053641 - LTR24B LTR ERV1 0 569 431 201 39 0 0 chr6 97361601 97361627 -85053615 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 516 240 81 39 chr6 97361627 97361780 -85053462 - LTR24B LTR ERV1 -138 431 145 419 165 0 25 chr6 97361883 97361962 -85053280 - LTR24B LTR ERV1 -499 77 1 389 350 45 9 chr6 97361987 97362207 -85053035 - L2 LINE L2 -1291 2023 1796 238 296 0 0 chr6 97362210 97362264 -85052978 - MER5A DNA MER1_type 0 189 136 1079 197 21 10 chr6 97362418 97362611 -85052631 - LTR8 LTR ERV1 0 691 497 * 1150 111 25 61 chr6 97362605 97362803 -85052439 - LTR8 LTR ERV1 -498 193 3 360 154 165 0 chr6 97362948 97363039 -85052203 - L1MB7 LINE L1 0 6184 6079 2997 186 38 60 chr6 97363040 97363999 -85051243 - L1ME1 LINE L1 -130 6036 5116 1523 161 93 18 chr6 97363999 97364279 -85050963 - AluJo SINE Alu -11 301 1 2997 186 38 60 chr6 97364279 97364447 -85050795 - L1ME1 LINE L1 -1050 5116 4946 194 295 205 9 chr6 97364608 97364720 -85050522 - L2 LINE L2 -579 2735 2602 381 272 72 8 chr6 97364825 97364950 -85050292 - MARNA DNA Mariner -322 264 132 963 129 0 0 chr6 97368553 97368677 -85046565 - FLAM_C SINE Alu -9 124 1 1511 199 0 8 chr6 97368769 97369036 -85046206 + AluJo SINE Alu 32 296 -16 503 287 53 7 chr6 97369741 97369891 -85045351 - L2 LINE L2 0 3272 3116 210 234 0 0 chr6 97370657 97370704 -85044538 - L2 LINE L2 0 3313 3267 1238 149 35 5 chr6 97370705 97370906 -85044336 + MER3 DNA MER1_type 2 208 -1 354 274 103 27 chr6 97371056 97371202 -85044040 - MIR3 SINE MIR -3 205 49 190 286 182 0 chr6 97371566 97371643 -85043599 - L2 LINE L2 -21 3251 3161 856 207 81 71 chr6 97371678 97371973 -85043269 + MER46C DNA MER2_type 19 316 -22 2252 113 0 0 chr6 97372227 97372529 -85042713 - AluY SINE Alu -9 302 1 24 67 0 0 chr6 97372538 97372583 -85042659 + AT_rich Low_complexity Low_complexity 1 45 0 349 185 74 93 chr6 97372602 97372685 -85042557 + L1ME4a LINE L1 5959 6042 -79 2596 55 13 0 chr6 97372685 97372994 -85042248 - AluSp SINE Alu 0 313 1 349 185 74 93 chr6 97372994 97373030 -85042212 + L1ME4a LINE L1 6042 6077 -44 785 234 98 41 chr6 97373030 97373274 -85041968 - MIR SINE MIR 0 262 5 349 185 74 93 chr6 97373274 97373315 -85041927 + L1ME4a LINE L1 6077 6117 -4 516 104 0 0 chr6 97373315 97373392 -85041850 + L1MA2 LINE L1 6228 6304 0 1541 183 36 11 chr6 97374504 97374685 -85040557 - AluJo SINE Alu 0 310 117 294 38 38 19 chr6 97374685 97374738 -85040504 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1541 183 36 11 chr6 97374738 97374859 -85040383 - AluJo SINE Alu -193 117 1 1896 154 3 7 chr6 97375068 97375367 -85039875 - AluJb SINE Alu -14 298 1 182 390 50 0 chr6 97375997 97376097 -85039145 - L2 LINE L2 -37 3276 3172 25 31 0 0 chr6 97376831 97376863 -85038379 + AT_rich Low_complexity Low_complexity 1 32 0 2597 68 0 0 chr6 97376880 97377191 -85038051 - AluY SINE Alu 0 311 1 1666 181 7 20 chr6 97377370 97377674 -85037568 + AluJo SINE Alu 1 300 -12 682 132 5 58 chr6 97377704 97377894 -85037348 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 1796 159 7 36 chr6 97377954 97378263 -85036979 + AluJb SINE Alu 1 300 -12 200 244 0 0 chr6 97378742 97378783 -85036459 - L2 LINE L2 -10 3303 3263 2797 10 0 0 chr6 97378969 97379301 -85035941 - AluYb8 SINE Alu 0 332 1 1571 166 53 11 chr6 97379682 97379966 -85035276 + AluJo SINE Alu 1 296 -16 529 182 69 44 chr6 97380036 97380195 -85035047 - MIR SINE MIR 0 262 100 314 310 0 10 chr6 97380236 97380336 -85034906 - MIR SINE MIR 0 262 164 186 203 17 68 chr6 97381214 97381273 -85033969 - MIR SINE MIR -101 161 106 2521 76 0 0 chr6 97381381 97381684 -85033558 + AluSg SINE Alu 1 303 -7 25 31 0 0 chr6 97381846 97381878 -85033364 + AT_rich Low_complexity Low_complexity 1 32 0 836 209 66 25 chr6 97382238 97382434 -85032808 - MIR SINE MIR -25 237 34 317 301 49 8 chr6 97382463 97382586 -85032656 + L2 LINE L2 264 391 -2923 277 312 229 41 chr6 97382612 97383170 -85032072 + L2 LINE L2 920 1582 -1732 2234 89 7 0 chr6 97383546 97383853 -85031389 + AluSx SINE Alu 1 309 0 2218 112 3 0 chr6 97383854 97384149 -85031093 + AluSq SINE Alu 3 298 -15 1210 197 56 16 chr6 97384154 97384403 -85030839 - AluJb SINE Alu -53 259 1 205 204 68 0 chr6 97385150 97385194 -85030048 + L2 LINE L2 3262 3308 -5 258 302 135 16 chr6 97385951 97386077 -85029165 + MIR SINE MIR 13 153 -109 210 333 162 56 chr6 97386837 97387180 -85028062 - L2 LINE L2 -9 3263 2857 1860 139 35 3 chr6 97387180 97387467 -85027775 + AluJb SINE Alu 1 296 -16 210 333 162 56 chr6 97387467 97387604 -85027638 - L2 LINE L2 -415 2857 2736 2012 85 68 10 chr6 97389296 97389591 -85025651 - AluSx SINE Alu 0 312 1 413 295 114 102 chr6 97390771 97391367 -85023875 - L1M2 LINE L1 -5471 1378 776 1847 137 3 6 chr6 97391495 97391808 -85023434 - AluJb SINE Alu 0 312 1 2171 94 52 0 chr6 97392827 97393113 -85022129 + AluSx SINE Alu 4 304 -8 1350 124 27 89 chr6 97393113 97393372 -85021870 + AluJb SINE Alu 45 287 -25 438 194 16 57 chr6 97393856 97393980 -85021262 - MIR SINE MIR -42 220 102 232 234 190 29 chr6 97394372 97394509 -85020733 - L1ME4a LINE L1 0 6121 5963 21 0 0 0 chr6 97394677 97394698 -85020544 + AT_rich Low_complexity Low_complexity 1 21 0 308 56 0 0 chr6 97394728 97394764 -85020478 + U2 snRNA snRNA 1 36 -152 21 57 0 0 chr6 97394801 97394836 -85020406 + AT_rich Low_complexity Low_complexity 1 35 0 808 146 0 46 chr6 97396443 97396573 -85018669 + FLAM_C SINE Alu 2 125 -18 373 294 103 22 chr6 97397453 97397589 -85017653 - MER5A DNA MER1_type 0 189 43 2472 85 0 0 chr6 97398266 97398572 -85016670 - AluSg SINE Alu -4 306 1 360 257 68 1 chr6 97398975 97399179 -85016063 - MER112 DNA MER1_type -6 254 8 2181 117 0 3 chr6 97399849 97400149 -85015093 - AluSg SINE Alu -11 299 1 220 263 0 0 chr6 97400570 97400627 -85014615 + L2 LINE L2 3256 3312 -1 267 326 106 54 chr6 97400801 97400962 -85014280 - L2 LINE L2 -506 2808 2657 537 16 0 0 chr6 97400962 97401024 -85014218 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 267 326 106 54 chr6 97401024 97401057 -85014185 - L2 LINE L2 -657 2657 2627 1885 173 0 10 chr6 97401057 97401358 -85013884 + AluJo SINE Alu 1 298 -14 267 326 106 54 chr6 97401358 97401702 -85013540 - L2 LINE L2 -687 2627 2241 553 224 71 33 chr6 97402293 97402476 -85012766 + MIR SINE MIR 73 262 0 1653 187 23 13 chr6 97404472 97404771 -85010471 + AluJo SINE Alu 1 302 -10 626 168 10 0 chr6 97407688 97407789 -85007453 - AluJ SINE Alu -19 293 192 845 182 0 7 chr6 97407789 97407932 -85007310 - AluJ SINE Alu -170 142 1 186 219 0 0 chr6 97408185 97408226 -85007016 + MER5B DNA MER1_type 1 41 -137 270 116 0 0 chr6 97408257 97408300 -85006942 + AluJ/FLAM SINE Alu 32 74 -228 255 313 76 21 chr6 97408305 97408449 -85006793 + MIR3 SINE MIR 55 206 -2 652 301 177 5 chr6 97408564 97409196 -85006046 + L1ME4a LINE L1 5379 6119 -2 37 76 0 0 chr6 97409256 97409335 -85005907 + AT_rich Low_complexity Low_complexity 1 79 0 186 159 0 48 chr6 97409358 97409421 -85005821 + GA-rich Low_complexity Low_complexity 1 60 0 1717 183 10 10 chr6 97409433 97409744 -85005498 + AluJb SINE Alu 1 311 -1 888 196 258 43 chr6 97411140 97411539 -85003703 + L1MC4 LINE L1 7558 8042 0 2126 101 24 20 chr6 97411565 97411863 -85003379 + AluSg SINE Alu 1 299 -11 573 294 51 0 chr6 97411911 97412088 -85003154 + MIR SINE MIR 47 232 -30 261 314 184 19 chr6 97412327 97412534 -85002708 - MIR SINE MIR -6 256 16 2332 73 17 0 chr6 97412683 97412970 -85002272 + AluSp SINE Alu 5 296 -17 722 233 159 7 chr6 97413239 97413522 -85001720 + L1ME4a LINE L1 5793 6118 -3 216 200 0 0 chr6 97413669 97413714 -85001528 + (TG)n Simple_repeat Simple_repeat 1 45 0 392 0 21 0 chr6 97414517 97414565 -85000677 + (TG)n Simple_repeat Simple_repeat 2 50 0 445 277 54 74 chr6 97414971 97415097 -85000145 + MIR SINE MIR 23 150 -112 2318 142 64 35 chr6 97415097 97415519 -84999723 + Tigger2a DNA MER2_type 1 434 0 445 277 54 74 chr6 97415519 97415560 -84999682 + MIR SINE MIR 150 190 -72 634 195 34 8 chr6 97415560 97415678 -84999564 + FLAM_A SINE Alu 2 122 -11 445 277 54 74 chr6 97415678 97415751 -84999491 + MIR SINE MIR 190 259 -3 2368 74 7 0 chr6 97416248 97416545 -84998697 + AluSp SINE Alu 1 299 -14 1557 180 35 21 chr6 97416991 97417280 -84997962 - AluJo SINE Alu -19 293 1 2356 96 0 0 chr6 97418852 97419154 -84996088 + AluY SINE Alu 1 302 -9 823 191 76 71 chr6 97419345 97419555 -84995687 + MER58A DNA MER1_type 1 211 -13 245 237 89 112 chr6 97419859 97419876 -84995366 - L1ME LINE L1 -213 5908 5892 288 250 88 88 chr6 97419876 97420080 -84995162 - L1ME3A LINE L1 -284 5886 5683 252 200 77 15 chr6 97420160 97420225 -84995017 - L1ME3A LINE L1 -645 5517 5449 1240 176 124 15 chr6 97420526 97420627 -84994615 + AluJo SINE Alu 1 90 -222 204 40 0 0 chr6 97420627 97420652 -84994590 + (TA)n Simple_repeat Simple_repeat 2 26 0 1240 176 124 15 chr6 97420652 97420817 -84994425 + AluJo SINE Alu 90 296 -16 2528 63 0 7 chr6 97420820 97421122 -84994120 + AluSg SINE Alu 1 300 -10 1138 193 48 0 chr6 97421189 97421438 -84993804 + L1ME1 LINE L1 5902 6162 -4 2046 112 66 0 chr6 97422068 97422355 -84992887 + AluSc SINE Alu 1 306 -3 906 230 0 0 chr6 97422573 97422734 -84992508 - FRAM SINE Alu -5 161 1 2443 74 7 0 chr6 97422761 97423059 -84992183 + AluY SINE Alu 1 300 -11 1003 186 0 0 chr6 97423144 97423305 -84991937 + FAM SINE Alu 11 171 -14 225 248 116 23 chr6 97424438 97424567 -84990675 + Charlie2 DNA MER1_type 48 188 -2594 1529 230 99 18 chr6 97424703 97425208 -84990034 + Charlie2 DNA MER1_type 1911 2456 -406 321 176 44 0 chr6 97426425 97426493 -84988749 - MER3 DNA MER1_type -8 201 131 832 194 93 34 chr6 97426502 97426739 -84988503 + L1MB3 LINE L1 5924 6174 -9 541 186 43 86 chr6 97426739 97426832 -84988410 - MER3 DNA MER1_type -27 135 48 3716 121 2 6 chr6 97426832 97427361 -84987881 - MER1A DNA MER1_type 0 527 1 541 186 43 86 chr6 97427361 97427407 -84987835 - MER3 DNA MER1_type -114 48 2 2487 69 3 3 chr6 97427501 97427806 -84987436 + AluY SINE Alu 1 305 -6 253 279 54 27 chr6 97428022 97428133 -84987109 + MIR SINE MIR 79 192 -70 4828 163 44 33 chr6 97428168 97428842 -84986400 + L1MB7 LINE L1 4903 5568 -616 2227 114 3 0 chr6 97428842 97429131 -84986111 + AluSq SINE Alu 1 290 -23 4828 163 44 33 chr6 97429131 97429329 -84985913 + L1MB7 LINE L1 5568 5762 -422 1905 186 0 0 chr6 97429329 97429625 -84985617 + AluJo SINE Alu 1 296 -16 4828 163 44 33 chr6 97429625 97429898 -84985344 + L1MB7 LINE L1 5762 6056 -128 2070 144 0 13 chr6 97429898 97430203 -84985039 + AluJb SINE Alu 2 302 -10 4828 163 44 33 chr6 97430203 97430315 -84984927 + L1MB7 LINE L1 6056 6165 -19 1820 163 10 29 chr6 97430418 97430731 -84984511 + AluJo SINE Alu 1 307 -5 374 278 43 93 chr6 97432016 97432814 -84982428 + L1MEd LINE L1 921 1695 -795 21 82 0 0 chr6 97433082 97433131 -84982111 + AT_rich Low_complexity Low_complexity 1 49 0 1947 151 0 10 chr6 97433201 97433499 -84981743 + AluJo SINE Alu 1 295 -17 706 165 16 0 chr6 97433517 97433638 -84981604 + FLAM_A SINE Alu 20 142 0 1976 181 37 163 chr6 97434019 97434648 -84980594 + L1ME1 LINE L1 4769 5475 -691 216 0 0 0 chr6 97434648 97434672 -84980570 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1848 130 30 4 chr6 97434675 97434945 -84980297 - AluJb SINE Alu -35 277 1 2406 96 3 6 chr6 97434955 97435267 -84979975 - AluSx SINE Alu -1 311 1 1976 181 37 163 chr6 97435267 97435703 -84979539 + L1ME1 LINE L1 5487 5733 -433 1342 26 6 0 chr6 97435703 97435859 -84979383 + AluY SINE Alu 154 310 -1 809 214 135 103 chr6 97435860 97436091 -84979151 + L1ME1 LINE L1 5727 5976 -190 2242 125 7 0 chr6 97436091 97436395 -84978847 + AluSq SINE Alu 1 306 -7 809 214 135 103 chr6 97436395 97436533 -84978709 + L1ME1 LINE L1 5976 6108 -58 370 262 95 8 chr6 97436875 97437001 -84978241 - MIR SINE MIR -4 258 122 1548 167 4 31 chr6 97437716 97437973 -84977269 + AluJo SINE Alu 1 250 -62 977 138 0 13 chr6 97437978 97438130 -84977112 - AluJo SINE Alu -162 150 1 391 256 45 77 chr6 97438389 97438635 -84976607 - MER112 DNA MER1_type -9 251 14 264 132 151 38 chr6 97438759 97438812 -84976430 + tRNA-Lys-AAA tRNA tRNA 1 59 -17 235 230 110 0 chr6 97439301 97439401 -84975841 - L2 LINE L2 -211 3061 2951 2099 133 7 0 chr6 97439489 97439782 -84975460 - AluSx SINE Alu -17 295 1 2344 94 0 16 chr6 97440265 97440572 -84974670 - AluSg SINE Alu -8 302 1 661 201 72 0 chr6 97441230 97441369 -84973873 + L1MB1 LINE L1 6017 6165 -3 2505 47 7 13 chr6 97441386 97441687 -84973555 + AluY SINE Alu 1 299 -12 1918 121 0 85 chr6 97441843 97442183 -84973059 - AluJo SINE Alu 0 312 2 182 250 25 0 chr6 97442502 97442542 -84972700 + L2 LINE L2 3221 3261 -11 2489 62 0 13 chr6 97443295 97443602 -84971640 + AluY SINE Alu 1 303 -8 268 311 59 17 chr6 97443635 97443754 -84971488 + MIR SINE MIR 13 136 -126 233 205 0 13 chr6 97443757 97443835 -84971407 + (CA)n Simple_repeat Simple_repeat 1 77 0 3922 139 69 33 chr6 97444457 97445214 -84970028 + LTR1 LTR ERV1 2 785 0 26 0 0 0 chr6 97445513 97445539 -84969703 + AT_rich Low_complexity Low_complexity 1 26 0 2259 119 0 13 chr6 97445582 97445893 -84969349 + AluSx SINE Alu 1 307 -5 22 0 0 0 chr6 97446570 97446592 -84968650 + AT_rich Low_complexity Low_complexity 1 22 0 664 216 0 0 chr6 97446599 97446715 -84968527 + FLAM_A SINE Alu 1 116 -17 204 122 0 0 chr6 97450148 97450189 -84965053 + (TCC)n Simple_repeat Simple_repeat 3 43 0 24 67 0 0 chr6 97450228 97450273 -84964969 + GC_rich Low_complexity Low_complexity 1 45 0 29 60 0 0 chr6 97450332 97450382 -84964860 + GC_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr6 97450423 97450445 -84964797 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr6 97450555 97450586 -84964656 + GC_rich Low_complexity Low_complexity 1 31 0 301 307 59 0 chr6 97451623 97451724 -84963518 - L2 LINE L2 -15 3257 3151 591 240 125 34 chr6 97451868 97452278 -84962964 - LTR33 LTR ERVL 0 521 17 2242 123 3 0 chr6 97452882 97453183 -84962059 - AluSx SINE Alu -10 302 1 276 269 0 0 chr6 97453738 97453831 -84961411 + GA-rich Low_complexity Low_complexity 1 93 0 230 306 166 31 chr6 97454188 97454381 -84960861 - MIR SINE MIR -6 256 38 1413 89 26 5 chr6 97454413 97454603 -84960639 - MER30 DNA MER1_type -36 194 1 190 0 32 32 chr6 97454791 97454822 -84960420 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 339 265 116 37 chr6 97455752 97456020 -84959222 - L2 LINE L2 -181 3132 2844 387 141 0 0 chr6 97456106 97456114 -84959128 + (GGGA)n Simple_repeat Simple_repeat 4 11 -63 1558 177 29 26 chr6 97456114 97456425 -84958817 + AluJb SINE Alu 1 312 0 387 141 0 0 chr6 97456425 97456487 -84958755 + (GGGA)n Simple_repeat Simple_repeat 10 74 0 1760 175 0 34 chr6 97456528 97456848 -84958394 + AluJo SINE Alu 1 309 -3 918 221 98 104 chr6 97456865 97457363 -84957879 + MLT1H1 LTR MaLR 3 502 -52 2285 101 3 0 chr6 97457389 97457686 -84957556 + AluSq SINE Alu 1 298 -15 410 156 39 26 chr6 97457701 97457778 -84957464 + AluS SINE Alu 1 78 -225 1944 116 18 7 chr6 97457778 97458055 -84957187 + AluSx SINE Alu 33 312 0 439 324 111 23 chr6 97458114 97458420 -84956822 - L2 LINE L2 -622 2692 2360 30 45 0 0 chr6 97458523 97458567 -84956675 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr6 97458677 97458705 -84956537 + AT_rich Low_complexity Low_complexity 1 28 0 2266 98 6 22 chr6 97458711 97459027 -84956215 + AluSx SINE Alu 1 311 -1 2187 124 0 13 chr6 97459033 97459347 -84955895 + AluSg SINE Alu 1 310 0 655 198 0 8 chr6 97459358 97459484 -84955758 + FLAM_A SINE Alu 2 126 -7 522 266 74 61 chr6 97459903 97460215 -84955027 + MLT1L LTR MaLR 212 527 -88 2136 110 0 77 chr6 97460764 97461101 -84954141 - AluSx SINE Alu -1 311 1 990 206 183 16 chr6 97461392 97461644 -84953598 + AluSx SINE Alu 9 302 -10 1690 184 0 20 chr6 97462042 97462336 -84952906 + AluJo SINE Alu 1 288 -24 775 224 58 18 chr6 97462486 97462674 -84952568 + MIR SINE MIR 31 231 -31 2228 109 21 53 chr6 97462674 97463050 -84952192 - THE1B LTR MaLR 0 364 1 775 224 58 18 chr6 97463050 97463084 -84952158 + MIR SINE MIR 231 262 0 217 245 19 0 chr6 97463255 97463308 -84951934 + L2 LINE L2 3175 3228 -44 2168 132 0 0 chr6 97463666 97463970 -84951272 - AluSx SINE Alu -8 304 1 271 176 39 0 chr6 97464025 97464076 -84951166 + MLT1L LTR MaLR 127 179 -436 888 169 0 66 chr6 97464298 97464464 -84950778 - AluJb SINE Alu -21 291 137 309 280 40 0 chr6 97464597 97464697 -84950545 + L1MD2 LINE L1 4065 4168 -1978 4357 160 51 56 chr6 97464738 97465043 -84950199 + L1MD2 LINE L1 5119 5424 -935 1594 149 51 29 chr6 97465043 97465319 -84949923 - AluJo SINE Alu -30 282 1 4357 160 51 56 chr6 97465319 97465836 -84949406 + L1MD2 LINE L1 5424 5926 -433 2198 97 7 10 chr6 97465836 97466126 -84949116 - AluSx SINE Alu -23 289 1 4357 160 51 56 chr6 97466126 97466332 -84948910 + L1MD2 LINE L1 5926 6132 -227 297 0 0 0 chr6 97466332 97466365 -84948877 + (CA)n Simple_repeat Simple_repeat 2 34 0 2163 125 6 22 chr6 97466944 97467257 -84947985 + AluSx SINE Alu 1 308 -4 237 257 122 0 chr6 97467298 97467372 -84947870 + L1ME3A LINE L1 4763 4845 -1301 306 348 17 0 chr6 97467414 97467529 -84947713 + L1ME3A LINE L1 4980 5096 -1050 1115 253 122 63 chr6 97467542 97467704 -84947538 + L1ME3A LINE L1 5325 5476 -694 2481 54 17 3 chr6 97467704 97467999 -84947243 - AluY SINE Alu -12 299 1 1115 253 122 63 chr6 97467999 97468434 -84946808 + L1ME3A LINE L1 5476 5957 -213 306 338 14 7 chr6 97468557 97468702 -84946540 - L2 LINE L2 -1415 1899 1754 2368 87 7 7 chr6 97469276 97469575 -84945667 + AluSq SINE Alu 1 299 -14 1618 165 88 0 chr6 97469734 97470007 -84945235 + AluJo SINE Alu 1 297 -15 2404 89 0 13 chr6 97470279 97470592 -84944650 + AluSg SINE Alu 1 309 -1 251 351 0 11 chr6 97470744 97470838 -84944404 - L2 LINE L2 -3 3310 3218 21 100 0 0 chr6 97471339 97471409 -84943833 + GC_rich Low_complexity Low_complexity 1 70 0 274 311 128 7 chr6 97472327 97472475 -84942767 + MIR SINE MIR 10 175 -87 940 143 300 30 chr6 97472712 97472942 -84942300 - AluJo SINE Alu -11 301 10 1888 194 87 39 chr6 97474198 97474713 -84940529 - MER119 DNA MER1_type 0 583 44 929 186 12 0 chr6 97474742 97474914 -84940328 + L1MB3 LINE L1 5843 6016 -167 330 119 17 0 chr6 97474902 97474961 -84940281 + L1MC4 LINE L1 7981 8040 -2 * 346 161 25 12 chr6 97475718 97475799 -84939443 - MER113 DNA MER1_type? -426 95 14 1221 155 14 33 chr6 97476015 97476252 -84938990 - AluJb SINE Alu 0 307 75 776 221 141 24 chr6 97476400 97476756 -84938486 - MLT1J2 LTR MaLR -10 440 59 2085 120 10 10 chr6 97476878 97477169 -84938073 - AluSx SINE Alu -21 291 1 243 170 0 0 chr6 97477189 97477236 -84938006 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2181 130 7 0 chr6 97477922 97478223 -84937019 - AluSx SINE Alu -9 303 1 3010 145 32 49 chr6 97478274 97478841 -84936401 - MER34B LTR ERV1 0 565 9 1094 146 0 34 chr6 97478869 97479047 -84936195 + FAM SINE Alu 1 172 -3 237 280 20 0 chr6 97479060 97479110 -84936132 + MER58B DNA MER1_type 2 52 -289 * 613 211 8 8 chr6 97479109 97479232 -84936010 + MER58B DNA MER1_type 204 326 -15 2180 112 0 7 chr6 97479383 97479679 -84935563 - AluSx SINE Alu -18 294 1 280 288 18 45 chr6 97479728 97479752 -84935490 - MER5A DNA MER1_type 0 189 166 3421 162 104 76 chr6 97479752 97479847 -84935395 - MER4D LTR ERV1 0 903 812 2320 116 3 0 chr6 97479847 97480158 -84935084 - AluSq SINE Alu -1 312 1 3421 162 104 76 chr6 97480158 97480217 -84935025 - MER4D LTR ERV1 -91 812 756 2009 144 10 0 chr6 97480217 97480522 -84934720 - AluSx SINE Alu -4 308 1 3421 162 104 76 chr6 97480522 97480568 -84934674 - MER4D LTR ERV1 -147 756 713 1859 149 3 44 chr6 97480568 97480884 -84934358 + AluJb SINE Alu 1 303 -9 3421 162 104 76 chr6 97480884 97481558 -84933684 - MER4D LTR ERV1 -190 713 3 280 288 18 45 chr6 97481558 97481644 -84933598 - MER5A DNA MER1_type -23 166 82 1285 126 33 60 chr6 97481700 97481915 -84933327 - AluJb SINE Alu -19 293 85 2232 116 0 0 chr6 97482912 97483206 -84932036 + AluSq SINE Alu 1 294 -19 3552 144 14 48 chr6 97483283 97483487 -84931755 + Tigger1 DNA MER2_type 26 235 -2183 2288 103 6 13 chr6 97483487 97483664 -84931578 - AluSx SINE Alu -2 310 134 2157 118 3 0 chr6 97483664 97483970 -84931272 - AluSc SINE Alu -2 307 1 2288 103 6 13 chr6 97483970 97484104 -84931138 - AluSx SINE Alu -178 134 1 3552 144 14 48 chr6 97484104 97484297 -84930945 + Tigger1 DNA MER2_type 235 398 -2020 2164 117 3 0 chr6 97484297 97484608 -84930634 + AluSq SINE Alu 1 312 0 3552 144 14 48 chr6 97484608 97484827 -84930415 + Tigger1 DNA MER2_type 398 623 -1795 1840 165 0 24 chr6 97484827 97484925 -84930317 + AluJb SINE Alu 1 100 -212 2585 96 27 3 chr6 97484925 97485291 -84929951 + THE1C LTR MaLR 1 375 0 1840 165 0 24 chr6 97485291 97485489 -84929753 + AluJb SINE Alu 100 290 -22 7963 101 22 34 chr6 97485498 97485908 -84929334 + Tigger1 DNA MER2_type 614 1027 -1391 2239 112 7 0 chr6 97485908 97486213 -84929029 - AluSp SINE Alu -6 307 1 7963 101 22 34 chr6 97486213 97486379 -84928863 + Tigger1 DNA MER2_type 1027 1193 -1225 2081 137 17 0 chr6 97486379 97486679 -84928563 + AluJb SINE Alu 1 305 -7 7963 101 22 34 chr6 97486679 97486975 -84928267 + Tigger1 DNA MER2_type 1193 1491 -927 2712 46 0 0 chr6 97486975 97487282 -84927960 + AluY SINE Alu 1 307 -4 7963 101 22 34 chr6 97487282 97487653 -84927589 + Tigger1 DNA MER2_type 1491 1845 -573 364 295 80 52 chr6 97487655 97487980 -84927262 + MER65A LTR ERV1 1 334 -111 3315 144 26 29 chr6 97488079 97488281 -84926961 + Tigger1 DNA MER2_type 1836 2037 -381 1953 105 94 0 chr6 97488281 97488558 -84926684 + AluSx SINE Alu 1 303 -9 3315 144 26 29 chr6 97488558 97488738 -84926504 + Tigger1 DNA MER2_type 2037 2216 -202 1362 197 65 7 chr6 97488738 97489028 -84926214 - AluJo SINE Alu -5 307 1 3315 144 26 29 chr6 97489028 97489228 -84926014 + Tigger1 DNA MER2_type 2216 2417 -1 2019 148 0 3 chr6 97489252 97489555 -84925687 + AluJb SINE Alu 1 302 -10 1530 164 62 0 chr6 97490141 97490415 -84924827 + AluJo SINE Alu 1 291 -21 27 0 0 0 chr6 97490831 97490858 -84924384 + AT_rich Low_complexity Low_complexity 1 27 0 360 260 16 39 chr6 97491247 97491374 -84923868 - L1ME3A LINE L1 -70 6100 5977 2386 154 30 11 chr6 97491374 97491815 -84923427 - Tigger6a DNA MER2_type 0 1083 635 1062 138 31 0 chr6 97491815 97491974 -84923268 - AluSg/x SINE Alu -21 289 126 221 0 35 0 chr6 97491974 97492003 -84923239 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr6 97492007 97492036 -84923206 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2236 90 0 7 chr6 97492040 97492328 -84922914 - AluY SINE Alu -24 287 2 3033 191 39 10 chr6 97492329 97492953 -84922289 - Tigger6a DNA MER2_type -441 642 1 2020 143 0 10 chr6 97493074 97493368 -84921874 - AluSx SINE Alu -19 293 3 2439 149 39 15 chr6 97493412 97493706 -84921536 - MSTA LTR MaLR 0 428 120 2801 108 30 26 chr6 97493706 97494091 -84921151 + MSTA LTR MaLR 1 390 -38 1884 138 11 4 chr6 97494091 97494366 -84920876 - AluSx SINE Alu 0 312 36 2801 108 30 26 chr6 97494366 97494406 -84920836 + MSTA LTR MaLR 390 428 0 2439 149 39 15 chr6 97494406 97494520 -84920722 - MSTA LTR MaLR -308 120 10 1810 171 116 0 chr6 97494537 97494883 -84920359 - MLT1B LTR MaLR -4 386 1 1826 227 61 40 chr6 97495058 97495583 -84919659 - MLT1F LTR MaLR -6 536 1 2089 158 11 16 chr6 97496055 97496422 -84918820 + MLT1A1 LTR MaLR 1 365 0 2143 162 36 30 chr6 97496521 97497064 -84918178 - MLT2A2 LTR ERVL -8 546 1 2438 71 3 14 chr6 97497307 97497604 -84917638 - AluSp SINE Alu -19 294 1 1209 205 13 26 chr6 97497795 97498029 -84917213 - AluJo SINE Alu -81 231 1 27 81 0 0 chr6 97498452 97498514 -84916728 + AT_rich Low_complexity Low_complexity 1 62 0 2334 79 7 0 chr6 97498658 97498948 -84916294 - AluSx SINE Alu -6 306 15 1870 143 0 42 chr6 97499133 97499440 -84915802 - AluSx SINE Alu -18 294 1 2328 95 0 0 chr6 97500176 97500498 -84914744 + AluSx SINE Alu 1 322 0 1474 184 39 39 chr6 97501085 97501394 -84913848 - AluJo SINE Alu -3 309 1 658 224 107 31 chr6 97501428 97501718 -84913524 - L1ME4a LINE L1 -215 5906 5595 2003 104 0 7 chr6 97501808 97502077 -84913165 - AluSx SINE Alu -45 267 1 2273 107 0 3 chr6 97503347 97503647 -84911595 - AluSx SINE Alu -13 299 1 534 183 80 103 chr6 97503676 97503805 -84911437 + MIR SINE MIR 9 134 -128 1747 185 0 22 chr6 97503805 97504118 -84911124 + AluJb SINE Alu 1 306 -6 534 183 80 103 chr6 97504118 97504163 -84911079 + MIR SINE MIR 134 179 -83 972 275 181 23 chr6 97504182 97504919 -84910323 - L1ME4a LINE L1 -16 6105 5270 1770 178 3 3 chr6 97504941 97505233 -84910009 - AluJb SINE Alu -20 292 1 761 168 15 23 chr6 97505289 97505420 -84909822 + FLAM_A SINE Alu 1 130 -3 1347 91 0 76 chr6 97506728 97506926 -84908316 + MER30B DNA MER1_type 4 186 -4 527 279 130 68 chr6 97508240 97508563 -84906679 - L1ME4a LINE L1 -25 6096 5794 1686 158 21 11 chr6 97508563 97508869 -84906373 + AluJo SINE Alu 1 309 0 527 279 130 68 chr6 97508869 97508892 -84906350 - L1ME4a LINE L1 -327 5794 5774 260 53 26 0 chr6 97508892 97508930 -84906312 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 527 279 130 68 chr6 97508930 97509180 -84906062 - L1ME4a LINE L1 -347 5774 5461 1760 105 27 19 chr6 97509347 97509605 -84905637 + AluSx SINE Alu 53 312 0 960 230 84 88 chr6 97509606 97510058 -84905184 - L2 LINE L2 -1047 2267 1818 1008 90 0 0 chr6 97510058 97510191 -84905051 + AluSp/q SINE Alu 176 308 -5 186 240 20 0 chr6 97510194 97510244 -84904998 - L2 LINE L2 -1481 1833 1783 1684 142 54 19 chr6 97510245 97510562 -84904680 - MLT1C LTR MaLR -139 328 1 2192 116 26 0 chr6 97511355 97511657 -84903585 + AluSx SINE Alu 1 310 -2 1963 131 0 7 chr6 97511923 97512226 -84903016 + AluSx SINE Alu 1 301 0 279 0 0 0 chr6 97512333 97512364 -84902878 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2263 70 0 0 chr6 97512672 97512943 -84902299 - AluY SINE Alu -40 271 1 535 237 111 0 chr6 97513933 97514068 -84901174 - L1ME LINE L1 -442 5679 5530 1906 116 0 12 chr6 97514395 97514685 -84900557 - AluSx SINE Alu 0 317 31 323 232 106 28 chr6 97514912 97515054 -84900188 - L1ME4a LINE L1 -9 6112 5960 2502 66 0 0 chr6 97515167 97515470 -84899772 - AluY SINE Alu -8 303 1 246 280 0 13 chr6 97515538 97515613 -84899629 - L1ME4a LINE L1 -84 6037 5964 2489 73 0 0 chr6 97515716 97516018 -84899224 + AluY SINE Alu 1 302 -9 28 29 0 0 chr6 97516044 97516079 -84899163 + AT_rich Low_complexity Low_complexity 1 35 0 1478 237 62 34 chr6 97516188 97516367 -84898875 + MLT1C LTR MaLR 1 173 -294 2126 135 20 0 chr6 97516367 97516670 -84898572 + 7SLRNA srpRNA srpRNA 1 309 -11 2176 85 0 73 chr6 97516677 97517007 -84898235 + AluSx SINE Alu 1 306 -6 1478 237 62 34 chr6 97517007 97517236 -84898006 + MLT1C LTR MaLR 178 429 -38 279 338 142 38 chr6 97517244 97517484 -84897758 - L2 LINE L2 -14 3258 2994 337 255 199 14 chr6 97517485 97517626 -84897616 - L1ME4a LINE L1 -347 5774 5608 406 252 18 92 chr6 97517631 97517804 -84897438 - L1ME4a LINE L1 -294 5827 5643 305 74 0 19 chr6 97517804 97517858 -84897384 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 1282 41 0 0 chr6 97517858 97518004 -84897238 - L1PA4 LINE L1 -10 6145 6000 406 252 18 92 chr6 97518004 97518047 -84897195 - L1ME4a LINE L1 -476 5645 5626 46 62 0 0 chr6 97518739 97518820 -84896422 + AT_rich Low_complexity Low_complexity 1 81 0 1612 145 68 57 chr6 97518900 97519196 -84896046 + AluJb SINE Alu 12 310 -2 566 256 23 56 chr6 97519350 97519522 -84895720 + L1ME LINE L1 5388 5553 -568 1219 180 59 5 chr6 97519522 97519744 -84895498 + MER46A DNA MER2_type 1 234 -2 566 256 23 56 chr6 97519744 97519786 -84895456 + L1ME LINE L1 5553 5595 -526 189 159 0 0 chr6 97519953 97519997 -84895245 + (CTG)n Simple_repeat Simple_repeat 1 44 0 200 269 264 5 chr6 97520865 97521073 -84894169 - L3 LINE CR1 -183 1394 1133 430 237 201 66 chr6 97521123 97521427 -84893815 - L3 LINE CR1 -556 1021 677 237 33 0 0 chr6 97522120 97522150 -84893092 + (TC)n Simple_repeat Simple_repeat 2 31 0 1967 112 36 7 chr6 97522156 97522434 -84892808 - AluSx SINE Alu -26 286 1 302 230 93 58 chr6 97523210 97523349 -84891893 + MER20B DNA MER1_type 36 179 -604 21 0 0 0 chr6 97524197 97524218 -84891024 + AT_rich Low_complexity Low_complexity 1 21 0 430 225 0 0 chr6 97524375 97524455 -84890787 + Tigger3(Golem) DNA MER2_type 2 81 -2948 27 49 0 0 chr6 97524547 97524588 -84890654 + AT_rich Low_complexity Low_complexity 1 41 0 600 118 12 0 chr6 97524588 97524673 -84890569 + Tigger3(Golem) DNA MER2_type 2919 3004 -25 683 131 49 25 chr6 97524715 97524837 -84890405 - MLT1A1 LTR MaLR 0 374 250 26 0 0 0 chr6 97524838 97524864 -84890378 + AT_rich Low_complexity Low_complexity 1 26 0 730 160 59 0 chr6 97524864 97524983 -84890259 - AluJo SINE Alu -176 136 11 1015 159 60 76 chr6 97524985 97525236 -84890006 - MLT1A1 LTR MaLR -118 247 1 786 298 48 0 chr6 97525256 97525484 -84889758 + MIR SINE MIR 8 246 -16 476 253 31 25 chr6 97525566 97525728 -84889514 - L1ME LINE L1 -425 5696 5534 1053 165 0 0 chr6 97526529 97526693 -84888549 + FRAM SINE Alu 1 163 -13 300 158 129 119 chr6 97526974 97527075 -84888167 + MER112 DNA MER1_type 1 102 -158 537 44 0 0 chr6 97527093 97527161 -84888081 + (CTATT)n Simple_repeat Simple_repeat 5 72 0 363 229 0 0 chr6 97527163 97527233 -84888009 + MER112 DNA MER1_type 179 248 -12 201 219 24 0 chr6 97528413 97528454 -84886788 - MIR3 SINE MIR -10 198 157 256 278 14 0 chr6 97528457 97528529 -84886713 - MER112 DNA MER1_type -5 255 183 277 276 60 60 chr6 97528658 97528792 -84886450 - L2 LINE L2 0 3313 3180 1269 234 111 28 chr6 97529041 97529465 -84885777 + MLT1C LTR MaLR 1 459 -8 2787 41 0 6 chr6 97529705 97530023 -84885219 + L1PA5 LINE L1 5833 6148 -6 1317 180 29 64 chr6 97530037 97530381 -84884861 + MER39 LTR ERV1 354 685 -22 1497 215 80 80 chr6 97531344 97531632 -84883610 - MLT1D LTR MaLR -3 502 212 1923 152 0 26 chr6 97531632 97531942 -84883300 - AluJo SINE Alu -10 302 1 1497 215 80 80 chr6 97531942 97532155 -84883087 - MLT1D LTR MaLR -292 213 1 774 134 45 15 chr6 97532157 97532291 -84882951 - MER31B LTR ERV1 0 466 329 577 152 20 10 chr6 97532311 97532410 -84882832 + AluJo SINE Alu 52 151 -161 1536 152 26 45 chr6 97532426 97532735 -84882507 - MER31B LTR ERV1 -163 303 1 2338 57 4 0 chr6 97533179 97533493 -84881749 + AluY SINE Alu 1 315 0 421 309 67 27 chr6 97534000 97534223 -84881019 - MIR SINE MIR -12 250 19 1797 103 0 4 chr6 97534751 97534994 -84880248 - AluSx SINE Alu -14 298 57 1472 222 26 17 chr6 97535926 97536278 -84878964 - L1MB7 LINE L1 -1 6183 5829 327 213 147 47 chr6 97536337 97536487 -84878755 - L1MC5 LINE L1 -76 7885 7721 21 0 0 0 chr6 97536584 97536605 -84878637 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 97536739 97536763 -84878479 + AT_rich Low_complexity Low_complexity 1 24 0 530 305 62 48 chr6 97537253 97537627 -84877615 + MLT1J LTR MaLR 196 614 -1 241 308 85 31 chr6 97537785 97537915 -84877327 + MER20 DNA MER1_type 79 215 -4 180 0 0 0 chr6 97539199 97539219 -84876023 + (T)n Simple_repeat Simple_repeat 1 20 0 768 140 0 0 chr6 97540592 97540699 -84874543 + FLAM_C SINE Alu 3 109 -34 183 222 74 0 chr6 97540983 97541037 -84874205 - MIR SINE MIR -21 241 184 291 313 36 27 chr6 97541679 97541791 -84873451 + MIR SINE MIR 21 133 -129 1281 241 150 34 chr6 97541793 97542544 -84872698 - L2 LINE L2 -8 3305 2477 1515 168 35 39 chr6 97542645 97542931 -84872311 - AluJo SINE Alu -27 285 1 3811 146 75 19 chr6 97543876 97544542 -84870700 + L1MA9 LINE L1 5554 6264 -48 2176 114 13 0 chr6 97544542 97544841 -84870401 - AluSx SINE Alu -9 303 1 3811 146 75 19 chr6 97544841 97544893 -84870349 + L1MA9 LINE L1 6264 6312 0 1234 181 29 29 chr6 97546314 97546557 -84868685 - MLT1F1 LTR MaLR 0 567 325 241 218 39 51 chr6 97547607 97547685 -84867557 - MIR3 SINE MIR -21 187 111 816 236 21 56 chr6 97547902 97548135 -84867107 - MIR SINE MIR -34 228 4 1236 263 67 13 chr6 97548153 97548525 -84866717 + MLT1I LTR MaLR 10 401 -8 1394 169 30 8 chr6 97548749 97549016 -84866226 - L1MB7 LINE L1 -10 6174 5902 311 298 96 0 chr6 97549016 97549120 -84866122 + L2 LINE L2 3200 3313 0 685 290 42 19 chr6 97549694 97549908 -84865334 + MIR SINE MIR 12 230 -32 21 36 0 0 chr6 97550146 97550174 -84865068 + AT_rich Low_complexity Low_complexity 1 28 0 869 102 34 0 chr6 97550174 97550292 -84864950 - AluJo SINE Alu -177 135 14 1517 150 92 27 chr6 97551137 97551430 -84863812 - AluJo SINE Alu 0 312 1 1202 285 72 12 chr6 97551447 97551865 -84863377 - L1ME3A LINE L1 -1 6169 5727 1492 110 59 9 chr6 97552221 97552322 -84862920 - MER30 DNA MER1_type 0 230 136 2051 130 3 3 chr6 97552322 97552615 -84862627 + AluSx SINE Alu 1 293 -19 1492 110 59 9 chr6 97552615 97552627 -84862615 - MER30 DNA MER1_type -94 136 126 216 0 0 0 chr6 97552627 97552651 -84862591 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1492 110 59 9 chr6 97552651 97552755 -84862487 - MER30 DNA MER1_type -104 126 1 1335 245 78 19 chr6 97552873 97553371 -84861871 - L1ME3A LINE L1 -449 5721 5192 340 222 23 129 chr6 97553725 97553896 -84861346 + MLT1D LTR MaLR 1 153 -352 687 254 180 42 chr6 97554013 97554296 -84860946 + MLT1D LTR MaLR 111 432 -73 2079 178 90 49 chr6 97554296 97554715 -84860527 + MLT2B1 LTR ERVL 1 444 -76 2025 125 14 7 chr6 97554715 97555003 -84860239 - AluSx SINE Alu -22 290 1 2079 178 90 49 chr6 97555003 97555072 -84860170 + MLT2B1 LTR ERVL 444 509 -11 382 135 67 45 chr6 97555067 97555091 -84860151 + MLT1D LTR MaLR 415 437 -68 * 1646 203 0 3 chr6 97555091 97555396 -84859846 - AluJo SINE Alu -8 304 1 382 135 67 45 chr6 97555396 97555460 -84859782 + MLT1D LTR MaLR 437 505 0 384 279 75 37 chr6 97556187 97556348 -84858894 - L2 LINE L2 0 3313 3147 489 49 0 0 chr6 97556348 97556409 -84858833 + AluY SINE Alu 2 62 -256 1194 196 9 5 chr6 97606412 97606631 -84808611 + MLT1C LTR MaLR 248 467 0 1689 172 0 20 chr6 97606968 97607265 -84807977 - AluJb SINE Alu -14 298 8 2181 188 23 85 chr6 97607356 97607572 -84807670 + MLT1D LTR MaLR 1 229 -276 1818 137 13 36 chr6 97607572 97607878 -84807364 + AluJo SINE Alu 1 299 -13 2181 188 23 85 chr6 97607878 97607904 -84807338 + MLT1D LTR MaLR 229 255 -250 1804 130 68 14 chr6 97607904 97608197 -84807045 + AluJo SINE Alu 1 309 -3 2181 188 23 85 chr6 97608197 97608485 -84806757 + MLT1D LTR MaLR 255 499 -6 558 202 19 0 chr6 97608945 97609049 -84806193 - FLAM_C SINE Alu -33 110 5 642 178 23 0 chr6 97609112 97609411 -84805831 + (TCTA)n Simple_repeat Simple_repeat 1 460 -6 633 221 7 0 chr6 97609411 97609560 -84805682 - L1MA10 LINE L1 -1 6333 6184 642 178 23 0 chr6 97609560 97609568 -84805674 + (TCTA)n Simple_repeat Simple_repeat 460 466 0 255 170 0 0 chr6 97609647 97609694 -84805548 + (TA)n Simple_repeat Simple_repeat 1 47 0 26 0 0 0 chr6 97609824 97609850 -84805392 + AT_rich Low_complexity Low_complexity 1 26 0 305 133 33 47 chr6 97610702 97610913 -84804329 + AluJb SINE Alu 1 300 -2 309 223 18 69 chr6 97611015 97611152 -84804090 + MER110 LTR ERV1 375 484 0 980 281 83 10 chr6 97611169 97611553 -84803689 + L2 LINE L2 2898 3309 -4 2240 119 7 0 chr6 97611601 97611911 -84803331 - AluSx SINE Alu 0 312 1 199 261 0 0 chr6 97611999 97612045 -84803197 + L2 LINE L2 3263 3308 -5 396 82 0 0 chr6 97612675 97612736 -84802506 + (TATG)n Simple_repeat Simple_repeat 2 62 0 222 42 62 21 chr6 97612736 97612784 -84802458 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1611 185 3 14 chr6 97612784 97613076 -84802166 - AluJo SINE Alu -21 291 3 2137 103 0 21 chr6 97613809 97614099 -84801143 + AluSg SINE Alu 8 291 -19 208 321 38 46 chr6 97614103 97614234 -84801008 - MIR3 SINE MIR -65 143 14 750 178 0 0 chr6 97614715 97614833 -84800409 + FLAM_C SINE Alu 1 118 -15 2059 153 0 0 chr6 97614947 97615255 -84799987 + AluJb SINE Alu 1 308 -4 230 298 53 21 chr6 97615964 97616058 -84799184 - L2 LINE L2 -15 3257 3161 449 333 51 30 chr6 97616068 97616099 -84799143 + MIR SINE MIR 23 52 -210 1981 129 3 44 chr6 97616099 97616416 -84798826 + AluSx SINE Alu 1 304 -8 449 333 51 30 chr6 97616416 97616618 -84798624 + MIR SINE MIR 52 261 -1 747 183 0 42 chr6 97617083 97617225 -84798017 + AluJo SINE Alu 1 136 -176 2119 117 0 0 chr6 97617413 97617721 -84797521 + AluSx SINE Alu 1 308 0 2907 13 0 0 chr6 97618182 97618494 -84796748 + AluYb8 SINE Alu 1 312 -6 245 241 121 0 chr6 97619735 97619818 -84795424 - MIR3 SINE MIR -11 197 105 2409 98 0 0 chr6 97620851 97621156 -84794086 + AluSx SINE Alu 1 305 -7 226 286 43 0 chr6 97621287 97621357 -84793885 - MIR SINE MIR -108 154 82 366 213 0 75 chr6 97621409 97621503 -84793739 - L1MC1 LINE L1 -1 6332 6246 312 156 0 0 chr6 97621539 97621584 -84793658 - Alu SINE Alu -255 45 1 784 240 108 86 chr6 97621612 97621733 -84793509 + L1ME4a LINE L1 5387 5504 -617 821 167 0 0 chr6 97621733 97621865 -84793377 + FLAM_C SINE Alu 2 133 0 784 240 108 86 chr6 97621865 97622254 -84792988 + L1ME4a LINE L1 5504 5916 -205 243 0 0 0 chr6 97622254 97622281 -84792961 + (CA)n Simple_repeat Simple_repeat 2 28 0 784 240 108 86 chr6 97622281 97622420 -84792822 + L1ME4a LINE L1 5916 6051 -70 1886 177 3 0 chr6 97622560 97622871 -84792371 + AluJo SINE Alu 1 312 0 411 271 48 58 chr6 97622879 97623086 -84792156 + MIR SINE MIR 26 230 -32 1807 163 17 7 chr6 97624109 97624409 -84790833 - AluJb SINE Alu -8 304 2 266 139 0 0 chr6 97624945 97624981 -84790261 + Alu SINE Alu 1 36 -264 890 186 0 0 chr6 97624984 97625124 -84790118 + AluJb SINE Alu 154 293 -19 304 350 45 45 chr6 97625308 97625531 -84789711 - L2 LINE L2 -93 3179 2957 286 287 129 48 chr6 97625599 97625808 -84789434 - L2 LINE L2 -527 2787 2562 30 45 0 0 chr6 97625870 97625914 -84789328 + AT_rich Low_complexity Low_complexity 1 44 0 183 323 62 0 chr6 97627907 97627972 -84787270 - L2 LINE L2 -48 3265 3197 2139 110 41 0 chr6 97628299 97628618 -84786624 - L1PB1 LINE L1 -3 6148 5817 386 206 10 31 chr6 97628618 97628715 -84786527 + L1PB1 LINE L1 5804 5898 -253 247 83 0 0 chr6 97628694 97628730 -84786512 + L1P5 LINE L1 5798 5833 -318 * 2726 89 18 8 chr6 97628729 97629124 -84786118 - L1P5 LINE L1 -357 5794 5396 1902 153 3 10 chr6 97629148 97629449 -84785793 + AluSx SINE Alu 1 299 -13 3843 133 44 27 chr6 97629641 97630301 -84784941 - LTR51 LTR ERV1 0 671 1 2500 160 74 36 chr6 97630749 97631249 -84783993 - MLT2B1 LTR ERVL -1 519 1 14623 119 31 31 chr6 97631254 97631451 -84783791 - Tigger1 DNA MER2_type -1 2417 2222 2156 116 3 22 chr6 97631451 97631770 -84783472 + AluSq SINE Alu 1 313 0 14623 119 31 31 chr6 97631770 97631939 -84783303 - Tigger1 DNA MER2_type -196 2222 2055 188 0 74 0 chr6 97631939 97631966 -84783276 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1659 191 0 11 chr6 97631968 97632251 -84782991 - AluJo SINE Alu -32 280 1 14623 119 31 31 chr6 97632251 97634110 -84781132 - Tigger1 DNA MER2_type -363 2055 184 1927 160 0 3 chr6 97634110 97634404 -84780838 + AluJb SINE Alu 1 293 -19 14623 119 31 31 chr6 97634404 97634587 -84780655 - Tigger1 DNA MER2_type -2234 184 3 356 345 135 14 chr6 97635876 97635908 -84779334 + L2 LINE L2 2818 2845 -468 1267 244 77 50 chr6 97635908 97636413 -84778829 - MLT2B1 LTR ERVL 0 520 2 356 345 135 14 chr6 97636413 97636751 -84778491 + L2 LINE L2 2845 3233 -80 1278 184 0 18 chr6 97636838 97637007 -84778235 - AluJb SINE Alu -10 302 136 2222 101 3 10 chr6 97637007 97637313 -84777929 - AluSg SINE Alu -6 304 1 1278 184 0 18 chr6 97637313 97637366 -84777876 - AluJb SINE Alu -176 136 84 257 245 133 10 chr6 97637390 97637488 -84777754 - MIR SINE MIR -100 162 53 180 0 0 0 chr6 97637840 97637860 -84777382 + (GA)n Simple_repeat Simple_repeat 1 20 0 369 0 0 0 chr6 97637866 97637907 -84777335 + (TG)n Simple_repeat Simple_repeat 1 41 0 373 283 38 47 chr6 97638754 97638966 -84776276 - L2 LINE L2 0 3313 3104 419 301 80 0 chr6 97639896 97640072 -84775170 + MIR SINE MIR 2 191 -71 1447 145 9 5 chr6 97640085 97640306 -84774936 + AluSx SINE Alu 1 222 -90 27 0 0 0 chr6 97641365 97641392 -84773850 + AT_rich Low_complexity Low_complexity 1 27 0 44 20 0 0 chr6 97641702 97641753 -84773489 + AT_rich Low_complexity Low_complexity 1 51 0 1393 153 138 11 chr6 97641771 97642039 -84773203 + AluJo SINE Alu 11 312 0 630 206 125 76 chr6 97642080 97642449 -84772793 - L1MC5 LINE L1 -172 7789 7403 257 135 39 0 chr6 97642452 97642504 -84772738 + MER5C DNA MER1_type 71 124 -200 21 36 0 0 chr6 97643552 97643580 -84771662 + AT_rich Low_complexity Low_complexity 1 28 0 6648 124 42 17 chr6 97643660 97645517 -84769725 - L1MA1 LINE L1 0 6302 4392 2041 91 0 4 chr6 97645517 97645782 -84769460 - AluSg SINE Alu -7 303 40 6648 124 42 17 chr6 97645782 97645953 -84769289 - L1MA1 LINE L1 -1910 4392 4227 242 170 170 30 chr6 97646129 97646264 -84768978 + MER5C DNA MER1_type 127 280 -44 825 213 20 126 chr6 97646280 97646637 -84768605 - L1MC5 LINE L1 -560 7401 7083 961 279 75 40 chr6 97647445 97647847 -84767395 - HERVL LTR ERVL -3471 2183 1768 1068 304 63 20 chr6 97647978 97648469 -84766773 - HERVL LTR ERVL -3503 1493 982 2256 103 3 13 chr6 97648565 97648877 -84766365 + AluY SINE Alu 3 311 0 2631 58 0 0 chr6 97649061 97649371 -84765871 + AluY SINE Alu 1 310 -1 332 250 34 23 chr6 97649378 97649466 -84765776 - HERVL LTR ERVL -4361 635 547 238 378 39 39 chr6 97649872 97649946 -84765296 - MIR SINE MIR 0 262 189 2157 100 3 10 chr6 97649946 97650235 -84765007 - AluY SINE Alu -24 287 1 238 378 39 39 chr6 97650235 97650393 -84764849 - MIR SINE MIR -72 190 30 219 69 0 0 chr6 97650580 97650609 -84764633 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2014 126 4 0 chr6 97650609 97650879 -84764363 - AluSx SINE Alu -28 284 14 957 200 6 0 chr6 97651089 97651254 -84763988 - AluJb SINE Alu -10 302 137 358 314 77 0 chr6 97651946 97652102 -84763140 - MIR SINE MIR -15 247 80 3144 134 40 6 chr6 97652169 97652719 -84762523 - L1MB7 LINE L1 -19 6165 5597 1458 201 59 86 chr6 97652997 97653054 -84762188 + MSTD LTR MaLR 1 58 -338 2043 150 0 10 chr6 97653054 97653361 -84761881 + AluJb SINE Alu 1 304 -8 1458 201 59 86 chr6 97653361 97653710 -84761532 + MSTD LTR MaLR 58 396 0 1079 164 4 88 chr6 97653971 97654206 -84761036 + AluJo SINE Alu 48 254 -58 207 0 0 0 chr6 97654223 97654246 -84760996 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1683 255 66 28 chr6 97654250 97654780 -84760462 + L1ME3A LINE L1 5593 6142 -28 1984 107 40 0 chr6 97654803 97655101 -84760141 + AluSx SINE Alu 1 310 -2 509 267 5 89 chr6 97656771 97656962 -84758280 - MIR SINE MIR -8 254 80 1005 233 238 32 chr6 97658251 97658663 -84756579 - MLT1D LTR MaLR -8 497 1 258 282 80 80 chr6 97658755 97658918 -84756324 - L2 LINE L2 -1 3271 3109 223 149 37 37 chr6 97659131 97659238 -84756004 + CT-rich Low_complexity Low_complexity 1 107 0 455 290 103 7 chr6 97659511 97659656 -84755586 - MIR SINE MIR -70 192 34 249 305 76 56 chr6 97659821 97660070 -84755172 - L2 LINE L2 -425 2889 2636 267 270 108 0 chr6 97660744 97660818 -84754424 - L2 LINE L2 -680 2634 2553 927 261 91 0 chr6 97660866 97661096 -84754146 - MIR SINE MIR -11 251 1 335 344 85 45 chr6 97661109 97661687 -84753555 - L2 LINE L2 -802 2512 1912 4275 151 31 32 chr6 97661706 97661743 -84753499 + L1MC2 LINE L1 5537 5573 -771 3577 148 6 8 chr6 97661743 97662271 -84752971 + MER1A DNA MER1_type 1 527 0 4275 151 31 32 chr6 97662271 97663032 -84752210 + L1MC2 LINE L1 5573 6334 -10 264 263 121 93 chr6 97663181 97663517 -84751725 + L2 LINE L2 2701 3058 -214 197 261 162 27 chr6 97663616 97663727 -84751515 - L2 LINE L2 -1424 1890 1765 367 290 105 0 chr6 97664120 97664244 -84750998 - L2 LINE L2 -2 3270 3134 891 186 72 93 chr6 97664279 97664569 -84750673 - MLT1B LTR MaLR -7 383 100 1990 118 7 7 chr6 97664696 97665002 -84750240 + AluSq SINE Alu 1 306 -7 181 426 0 0 chr6 97668284 97668352 -84746890 + MIR SINE MIR 28 95 -113 185 286 27 98 chr6 97669642 97669754 -84745488 - MIR SINE MIR -74 188 85 219 356 29 10 chr6 97671533 97671637 -84743605 + MIR3 SINE MIR 91 196 -12 270 309 24 0 chr6 97671897 97671981 -84743261 - MIR SINE MIR -149 113 28 515 314 108 10 chr6 97672290 97672484 -84742758 + MIR SINE MIR 13 225 -37 333 205 12 0 chr6 97672527 97672610 -84742632 - L1MB8 LINE L1 -6 6172 6089 1124 248 38 31 chr6 97672617 97672936 -84742306 + MLT1A2 LTR MaLR 1 321 -53 1702 128 64 3 chr6 97673021 97673303 -84741939 - AluSq SINE Alu -14 299 1 3147 155 40 4 chr6 97673309 97673863 -84741379 - L1MB7 LINE L1 -148 6036 5463 405 189 112 71 chr6 97673879 97674075 -84741167 - HAL1 LINE L1 -2 2505 2302 351 65 0 0 chr6 97674131 97674177 -84741065 + (TG)n Simple_repeat Simple_repeat 2 47 0 1412 168 78 0 chr6 97674181 97674449 -84740793 - AluJo SINE Alu -23 289 1 5071 177 38 6 chr6 97674469 97675137 -84740105 - L1MB3 LINE L1 -1 6182 5537 1918 84 0 11 chr6 97675137 97675410 -84739832 - AluY SINE Alu -9 302 33 5071 177 38 6 chr6 97675410 97675702 -84739540 - L1MB3 LINE L1 -646 5537 5256 5233 138 40 11 chr6 97675702 97676586 -84738656 - L1MC1 LINE L1 -17 6316 5408 5071 177 38 6 chr6 97676586 97677044 -84738198 - L1MB3 LINE L1 -927 5256 4710 1019 124 0 13 chr6 97677046 97677219 -84738023 - AluJb SINE Alu 0 303 133 1300 248 159 46 chr6 97677243 97677877 -84737365 - HAL1 LINE L1 -297 2210 1505 933 232 9 27 chr6 97678251 97678471 -84736771 - MER20 DNA MER1_type 0 219 4 732 253 95 36 chr6 97678693 97678896 -84736346 - MIR SINE MIR -21 241 23 3871 106 49 18 chr6 97678896 97679526 -84735716 - MER39B LTR ERV1 -3 650 1 732 253 95 36 chr6 97679526 97679543 -84735699 - MIR SINE MIR -239 23 8 249 314 128 0 chr6 97679809 97679911 -84735331 - MIR SINE MIR -77 131 17 2361 73 3 0 chr6 97680138 97680438 -84734804 - AluY SINE Alu -10 301 1 212 200 57 71 chr6 97680675 97680745 -84734497 - L2 LINE L2 -68 3204 3136 608 205 82 8 chr6 97681020 97681142 -84734100 - FLAM_A SINE Alu -2 131 1 1356 149 5 0 chr6 97681710 97681925 -84733317 + AluJo SINE Alu 87 302 -10 2023 149 0 0 chr6 97682375 97682684 -84732558 - AluSx SINE Alu -3 309 1 379 328 52 11 chr6 97682768 97682966 -84732276 - MIR SINE MIR -10 252 45 815 275 60 9 chr6 97683183 97683416 -84731826 + MIR SINE MIR 2 246 -16 218 286 98 54 chr6 97683511 97683577 -84731665 + MIR SINE MIR 120 194 -68 1969 121 48 0 chr6 97683577 97683867 -84731375 + AluSx SINE Alu 1 304 -8 218 286 98 54 chr6 97683867 97683912 -84731330 + MIR SINE MIR 194 236 -26 603 168 56 24 chr6 97683922 97684047 -84731195 + L1ME1 LINE L1 4616 4744 -1402 * 1040 203 64 16 chr6 97684040 97684291 -84730951 + L1ME1 LINE L1 5899 6161 -5 207 180 0 60 chr6 97684318 97684368 -84730874 - MIR SINE MIR -57 151 105 798 304 28 0 chr6 97685271 97685525 -84729717 - L1MC/D LINE L1 -590 5584 5518 537 146 10 0 chr6 97686172 97686275 -84728967 - LTR37A LTR ERV1 -34 392 289 1290 172 0 5 chr6 97686358 97686579 -84728663 - AluJo SINE Alu -92 220 1 1131 150 5 24 chr6 97686579 97686806 -84728436 - L1MB3 LINE L1 -40 6143 5926 702 242 32 21 chr6 97686835 97687025 -84728217 + MIR SINE MIR 71 262 0 590 223 39 0 chr6 97687078 97687208 -84728034 - MER5B DNA MER1_type 0 178 44 1503 224 72 8 chr6 97688723 97688822 -84726420 + L1M4 LINE L1 3760 3851 -2295 1840 167 58 19 chr6 97688822 97689182 -84726060 - MLT1A2 LTR MaLR 0 374 1 1503 224 72 8 chr6 97689182 97689457 -84725785 + L1M4 LINE L1 3851 4158 -1988 777 135 0 8 chr6 97689477 97689603 -84725639 + L1MB4 LINE L1 6049 6173 -7 2061 113 14 0 chr6 97689715 97690006 -84725236 + AluSx SINE Alu 1 295 -17 405 290 165 23 chr6 97690009 97690361 -84724881 + L1M4 LINE L1 3520 3921 -2225 2086 118 7 0 chr6 97690495 97690792 -84724450 + AluSg SINE Alu 1 299 -11 2076 126 0 7 chr6 97690995 97691297 -84723945 + AluSx SINE Alu 1 300 -12 2163 101 0 0 chr6 97691297 97691593 -84723649 + AluSc SINE Alu 1 296 -13 354 309 86 12 chr6 97691714 97691876 -84723366 - L3 LINE CR1 -706 871 698 2148 81 44 7 chr6 97692812 97693107 -84722135 + AluSx SINE Alu 1 306 -6 373 239 60 17 chr6 97694431 97694548 -84720694 + MER5B DNA MER1_type 3 124 -54 730 238 55 66 chr6 97694794 97695050 -84720192 + MIR SINE MIR 2 254 -8 1732 164 10 7 chr6 97695185 97695489 -84719753 - AluJb SINE Alu -7 305 1 303 279 93 29 chr6 97696433 97696573 -84718669 - MIR SINE MIR -66 196 48 512 258 23 23 chr6 97696712 97696844 -84718398 - MLT1A2 LTR MaLR 0 374 234 1851 105 52 0 chr6 97696896 97697163 -84718079 + AluSg SINE Alu 2 282 -28 1960 133 3 7 chr6 97698258 97698560 -84716682 + AluJb SINE Alu 1 301 -11 1713 181 0 29 chr6 97698828 97699138 -84716104 - AluJo SINE Alu -10 302 2 1415 124 10 5 chr6 97699169 97699378 -84715864 + AluSx SINE Alu 1 210 -102 511 202 10 0 chr6 97699432 97699536 -84715706 + AluSx SINE Alu 198 302 -7 205 174 0 43 chr6 97703145 97703180 -84712062 + L2 LINE L2 3267 3301 -12 1697 168 0 3 chr6 97703180 97703465 -84711777 + AluJb SINE Alu 3 286 -26 216 145 65 32 chr6 97703612 97703674 -84711568 + (TATAG)n Simple_repeat Simple_repeat 2 65 0 2417 60 0 0 chr6 97703879 97704180 -84711062 - AluY SINE Alu -10 301 1 2296 111 0 0 chr6 97705101 97705399 -84709843 + AluSg SINE Alu 1 298 -12 203 286 271 0 chr6 97705512 97705582 -84709660 + L2 LINE L2 3151 3239 -33 290 87 22 0 chr6 97705929 97705975 -84709267 - AluJ/FLAM SINE Alu -223 79 33 2316 107 0 3 chr6 97705975 97706260 -84708982 + AluSx SINE Alu 1 286 -26 198 103 0 0 chr6 97706260 97706289 -84708953 + (CATA)n Simple_repeat Simple_repeat 4 32 0 2316 107 0 3 chr6 97706289 97706313 -84708929 + AluSx SINE Alu 286 309 -3 1251 131 0 0 chr6 97706313 97706481 -84708761 + AluSg/x SINE Alu 134 301 -11 228 171 0 0 chr6 97706481 97706516 -84708726 - Alu SINE Alu -267 36 2 822 156 0 22 chr6 97706663 97706798 -84708444 - FLAM_C SINE Alu 0 133 2 3647 184 60 50 chr6 97706808 97707567 -84707675 - MER21B LTR ERV1 0 863 94 2389 97 0 0 chr6 97707567 97707867 -84707375 - AluSq SINE Alu -13 300 1 3647 184 60 50 chr6 97707867 97707962 -84707280 - MER21B LTR ERV1 -769 94 1 1810 145 62 10 chr6 97708576 97708866 -84706376 + AluSx SINE Alu 1 305 -7 2315 96 0 0 chr6 97709859 97710152 -84705090 - AluY SINE Alu -18 293 1 180 0 0 0 chr6 97710326 97710346 -84704896 + (T)n Simple_repeat Simple_repeat 1 20 0 1843 114 87 112 chr6 97710466 97710914 -84704328 - Tigger4(Zombi) DNA MER2_type 0 2731 2295 271 169 225 0 chr6 97710911 97710952 -84704290 - Tigger4(Zombi) DNA MER2_type -2644 87 57 * 1954 128 17 3 chr6 97710952 97711242 -84704000 - AluSx SINE Alu -18 294 1 271 169 225 0 chr6 97711242 97711271 -84703971 - Tigger4(Zombi) DNA MER2_type -2674 57 1 2142 88 36 29 chr6 97713487 97713793 -84701449 + AluY SINE Alu 1 308 -3 459 0 0 0 chr6 97716770 97716821 -84698421 + (TG)n Simple_repeat Simple_repeat 2 52 0 355 167 0 0 chr6 97717182 97717242 -84698000 - AluSc SINE Alu -1 298 239 1150 119 0 50 chr6 97717348 97717550 -84697692 - AluSx SINE Alu -120 192 1 246 253 13 25 chr6 97717680 97717759 -84697483 + L2 LINE L2 3229 3306 -7 2341 93 17 0 chr6 97718283 97718585 -84696657 + AluSq SINE Alu 1 307 -6 261 241 48 0 chr6 97718912 97718995 -84696247 + L1ME LINE L1 5762 5848 -318 1903 182 76 8 chr6 97719323 97719692 -84695550 + MSTD LTR MaLR 1 394 -2 2016 135 42 0 chr6 97719838 97720127 -84695115 + AluSx SINE Alu 1 301 -11 1301 170 58 5 chr6 97720329 97720553 -84694689 + MER65A LTR ERV1 51 286 -159 2050 86 23 36 chr6 97721772 97722075 -84693167 + AluSp SINE Alu 1 299 -14 1136 146 222 42 chr6 97722787 97723062 -84692180 + AluSx SINE Alu 1 318 0 711 469 154 0 chr6 97723256 97723516 -84691726 + AluSg SINE Alu 1 300 0 2285 132 17 13 chr6 97724607 97725010 -84690232 + MER65A LTR ERV1 1 445 0 555 276 89 36 chr6 97725010 97725308 -84689934 - L2 LINE L2 -1155 2159 1840 2272 102 3 0 chr6 97725308 97725602 -84689640 + AluSg SINE Alu 1 295 -15 555 276 89 36 chr6 97725602 97725640 -84689602 - L2 LINE L2 -1474 1840 1805 255 323 92 27 chr6 97725641 97725851 -84689391 + L2 LINE L2 2997 3233 -80 1744 171 23 16 chr6 97725851 97726161 -84689081 - AluJb SINE Alu 0 312 1 255 323 92 27 chr6 97726161 97726244 -84688998 + L2 LINE L2 3233 3309 -4 381 298 32 0 chr6 97726273 97726397 -84688845 - MIR SINE MIR -45 163 32 555 76 63 0 chr6 97726462 97726541 -84688701 + AluSp/q SINE Alu 216 299 -14 2273 63 0 0 chr6 97726542 97726813 -84688429 + AluY SINE Alu 2 272 -39 482 132 13 0 chr6 97726914 97726990 -84688252 - AluSg/x SINE Alu -98 212 136 1469 145 35 62 chr6 97727067 97727356 -84687886 + AluJo SINE Alu 27 307 -5 1229 69 0 0 chr6 97727706 97727850 -84687392 - AluSg/x SINE Alu -14 298 155 2167 91 35 3 chr6 97727857 97727902 -84687340 - AluSx SINE Alu -17 295 253 180 0 0 0 chr6 97727902 97727922 -84687320 + (CAGTG)n Simple_repeat Simple_repeat 5 24 0 2167 91 35 3 chr6 97727922 97728162 -84687080 - AluSx SINE Alu -59 253 1 435 374 102 17 chr6 97728217 97728739 -84686503 - L2 LINE L2 -834 2480 1915 1527 121 81 102 chr6 97728827 97728880 -84686362 + MER65A LTR ERV1 1 54 -391 1780 176 17 0 chr6 97728880 97729170 -84686072 + AluJb SINE Alu 1 295 -17 1527 121 81 102 chr6 97729170 97729448 -84685794 + MER65A LTR ERV1 54 325 -120 1616 106 5 5 chr6 97729449 97729666 -84685576 + AluSq SINE Alu 1 217 -96 2074 158 0 0 chr6 97730605 97730916 -84684326 - AluSx SINE Alu -1 311 1 906 220 65 12 chr6 97731086 97731331 -84683911 + L2 LINE L2 2424 2681 -633 415 217 7 94 chr6 97731407 97731545 -84683697 + MER115 DNA AcHobo 109 234 -459 2330 106 0 0 chr6 97731888 97732190 -84683052 - AluSg SINE Alu -8 302 1 319 302 233 5 chr6 97732714 97732903 -84682339 + MIR SINE MIR 5 236 -26 32 0 0 0 chr6 97732935 97732967 -84682275 + AT_rich Low_complexity Low_complexity 1 32 0 2551 66 0 3 chr6 97733795 97734099 -84681143 - AluY SINE Alu -8 303 1 2168 107 7 3 chr6 97734916 97735216 -84680026 - AluSq SINE Alu -12 301 1 21 0 0 0 chr6 97735445 97735466 -84679776 + AT_rich Low_complexity Low_complexity 1 21 0 2275 81 11 3 chr6 97735571 97735855 -84679387 + AluSg SINE Alu 1 286 -24 1435 191 40 27 chr6 97735875 97736174 -84679068 + AluJb SINE Alu 1 303 -9 2011 157 0 3 chr6 97736448 97736754 -84678488 - AluJb SINE Alu -7 305 1 2158 92 54 3 chr6 97737057 97737352 -84677890 + AluSx SINE Alu 1 310 -2 2392 80 7 3 chr6 97737381 97737682 -84677560 + AluY SINE Alu 1 302 -9 2343 95 0 19 chr6 97737693 97738008 -84677234 + AluSx SINE Alu 2 310 -2 305 140 0 0 chr6 97738028 97738078 -84677164 + FLAM_A SINE Alu 84 133 0 327 250 23 34 chr6 97738104 97738192 -84677050 + AluJo SINE Alu 94 180 -122 250 338 56 46 chr6 97738532 97738837 -84676405 - HAL1 LINE L1 -2141 366 59 244 231 0 0 chr6 97738842 97738894 -84676348 + LTR30 LTR ERV1 1 52 -670 763 133 82 169 chr6 97738894 97739149 -84676093 + LTR12 LTR ERV1 53 285 -429 313 221 0 0 chr6 97739150 97739218 -84676024 + LTR30 LTR ERV1 553 620 -102 756 157 25 0 chr6 97739218 97739339 -84675903 + LTR12 LTR ERV1 355 478 -236 7407 127 12 34 chr6 97739361 97740723 -84674519 + HERV9 LTR ERV1 54 1464 -6935 2408 135 0 0 chr6 97740720 97741067 -84674175 + HERV9 LTR ERV1 2694 3040 -5217 * 32730 92 7 7 chr6 97741058 97745442 -84669800 + HERV9 LTR ERV1 1462 5848 -2551 4323 82 41 0 chr6 97745542 97746105 -84669137 + HSMAR1 DNA Mariner 702 1287 0 671 301 70 41 chr6 97746194 97746445 -84668797 - L2 LINE L2 -16 3297 3028 2304 105 0 3 chr6 97746445 97746740 -84668502 + AluSx SINE Alu 1 294 -18 671 301 70 41 chr6 97746740 97746900 -84668342 - L2 LINE L2 -285 3028 2874 1946 129 4 11 chr6 97747509 97747788 -84667454 + AluJb SINE Alu 14 290 -22 684 176 9 0 chr6 97747789 97747897 -84667345 - AluJo/FLAM SINE Alu -201 111 3 1124 187 14 14 chr6 97748059 97748273 -84666969 - MER20 DNA MER1_type -5 214 1 840 202 28 0 chr6 97748368 97748546 -84666696 + MER5A DNA MER1_type 1 183 -6 2089 135 16 3 chr6 97748813 97749116 -84666126 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr6 97749134 97749164 -84666078 + AT_rich Low_complexity Low_complexity 1 30 0 710 58 0 0 chr6 97749294 97749381 -84665861 - U6 snRNA snRNA -6 101 15 667 192 0 0 chr6 97749383 97749503 -84665739 - FLAM_C SINE Alu -22 121 2 1761 167 7 10 chr6 97749594 97749888 -84665354 + AluJb SINE Alu 1 293 -19 1721 126 10 68 chr6 97750449 97750759 -84664483 + AluJb SINE Alu 13 304 -8 4144 153 48 37 chr6 97750779 97750832 -84664410 + L1MB7 LINE L1 5318 5369 -815 2110 130 3 16 chr6 97750832 97751139 -84664103 + AluSq SINE Alu 1 303 -10 4144 153 48 37 chr6 97751139 97751373 -84663869 + L1MB7 LINE L1 5369 5599 -585 1698 189 33 35 chr6 97751373 97751600 -84663642 + MLT1A1 LTR MaLR 1 228 -137 2015 112 62 0 chr6 97751600 97751876 -84663366 - AluSg SINE Alu -17 293 1 1698 189 33 35 chr6 97751876 97752014 -84663228 + MLT1A1 LTR MaLR 228 365 0 4144 153 48 37 chr6 97752014 97752198 -84663044 + L1MB7 LINE L1 5599 5780 -404 1805 171 0 10 chr6 97752198 97752496 -84662746 - AluJb SINE Alu -17 295 1 4144 153 48 37 chr6 97752496 97752853 -84662389 + L1MB7 LINE L1 5780 6157 -27 2024 121 4 0 chr6 97753177 97753450 -84661792 + AluSx SINE Alu 5 278 -34 2046 175 72 36 chr6 97753480 97753955 -84661287 - LTR22B LTR ERVK 0 492 1 4913 153 16 20 chr6 97753955 97754922 -84660320 - HERVK22 LTR ERVK 0 6837 2623 3508 119 0 4 chr6 97754994 97755488 -84659754 - HERVK22 LTR ERVK -2015 4822 4331 679 139 0 0 chr6 97755488 97755589 -84659653 - LTR12 LTR ERV1 -133 581 481 293 303 10 0 chr6 97755590 97755689 -84659553 - LTR30 LTR ERV1 -79 643 544 253 179 90 0 chr6 97755689 97755756 -84659486 - LTR12 LTR ERV1 -437 277 205 1106 113 5 67 chr6 97755795 97755989 -84659253 - LTR12 LTR ERV1 -480 234 53 296 192 0 0 chr6 97755989 97756041 -84659201 - LTR30 LTR ERV1 -670 52 1 3178 96 9 5 chr6 97756041 97756479 -84658763 - HERVK22 LTR ERVK -2503 4334 3895 1686 52 9 0 chr6 97756581 97756791 -84658451 + AluY SINE Alu 94 305 -6 2071 136 0 10 chr6 97757106 97757428 -84657814 + AluSx SINE Alu 1 312 0 2035 144 0 0 chr6 97757465 97757770 -84657472 + AluSx SINE Alu 1 305 -7 650 174 116 16 chr6 97757791 97757912 -84657330 - FLAM_C SINE Alu 0 133 1 1213 156 73 5 chr6 97757976 97758181 -84657061 - MER20 DNA MER1_type 0 219 1 2442 68 3 3 chr6 97758285 97758595 -84656647 + AluY SINE Alu 1 310 -1 1431 93 13 26 chr6 97758625 97758851 -84656391 + HSMAR1 DNA Mariner 9 231 -1056 2350 98 0 0 chr6 97758976 97759273 -84655969 - AluSq SINE Alu -16 297 1 2257 111 0 0 chr6 97759598 97759887 -84655355 + AluSq SINE Alu 1 289 -24 1798 145 15 0 chr6 97760038 97760300 -84654942 + AluJb SINE Alu 1 266 -46 22 0 0 0 chr6 97760703 97760725 -84654517 + AT_rich Low_complexity Low_complexity 1 22 0 2407 71 3 10 chr6 97762354 97762663 -84652579 - AluSq SINE Alu -6 307 1 21 0 0 0 chr6 97763735 97763756 -84651486 + GC_rich Low_complexity Low_complexity 1 21 0 212 242 81 16 chr6 97766831 97766893 -84648349 - L2 LINE L2 0 3272 3207 1856 129 8 63 chr6 97767785 97768149 -84647093 - HERVK22 LTR ERVK -6491 346 3 2307 167 68 25 chr6 97768236 97768708 -84646534 - LTR22B LTR ERVK 0 492 1 815 144 0 8 chr6 97768742 97768867 -84646375 + FLAM_C SINE Alu 1 124 -19 715 174 22 12 chr6 97768897 97769033 -84646209 - LTR12 LTR ERV1 -234 480 296 308 221 0 0 chr6 97769039 97769107 -84646135 - LTR30 LTR ERV1 -102 620 553 728 147 76 119 chr6 97769108 97769364 -84645878 - LTR12 LTR ERV1 -429 1983 48 2361 82 7 3 chr6 97769366 97769669 -84645573 + AluSx SINE Alu 1 304 -8 241 163 0 0 chr6 97769687 97769730 -84645512 - LTR30 LTR ERV1 -679 43 1 1622 113 4 0 chr6 97769734 97769965 -84645277 - HERV9 LTR ERV1 -4 8395 8164 1796 173 0 22 chr6 97770094 97770406 -84644836 + AluJo SINE Alu 1 305 -7 6993 168 66 49 chr6 97770958 97772585 -84642657 + L1M4c LINE L1 7 1661 -4723 1858 161 0 26 chr6 97772585 97772895 -84642347 + AluJb SINE Alu 1 302 -10 201 39 0 0 chr6 97773040 97773066 -84642176 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1662 201 39 6 chr6 97773145 97773478 -84641764 - L1MC1 LINE L1 -14 6319 5976 3375 152 62 27 chr6 97773535 97773572 -84641670 - L1MB3 LINE L1 -15 6168 6134 2297 112 0 0 chr6 97773572 97773884 -84641358 - AluSx SINE Alu 0 312 1 3375 152 62 27 chr6 97773884 97774509 -84640733 - L1MB3 LINE L1 -49 6134 5483 307 79 101 0 chr6 97774518 97774593 -84640649 - L1MB3 LINE L1 -806 5377 5297 2311 71 0 20 chr6 97774607 97774902 -84640340 + AluY SINE Alu 1 289 -22 701 162 0 18 chr6 97774913 97775024 -84640218 - FLAM_C SINE Alu -24 119 11 6657 198 63 31 chr6 97775032 97775492 -84639750 - L1 LINE L1 -815 5331 4887 1596 199 0 7 chr6 97775492 97775793 -84639449 + AluJo SINE Alu 1 299 -13 6657 198 63 31 chr6 97775793 97775885 -84639357 - L1 LINE L1 -1259 4887 4799 1475 204 6 22 chr6 97775885 97776198 -84639044 - AluJo SINE Alu -1 311 4 6657 198 63 31 chr6 97776198 97776456 -84638786 - L1 LINE L1 -1347 4799 4551 1819 138 93 34 chr6 97776456 97776810 -84638432 - THE1C LTR MaLR 0 375 1 6657 198 63 31 chr6 97776810 97777770 -84637472 - L1 LINE L1 -1595 4551 3503 1779 134 16 59 chr6 97777770 97778091 -84637151 - AluJo SINE Alu -5 307 1 614 93 0 37 chr6 97778091 97778199 -84637043 - L1M4c LINE L1 -4371 2013 1910 2303 98 3 0 chr6 97778199 97778496 -84636746 + AluSc SINE Alu 1 298 -11 1474 181 23 29 chr6 97778617 97778926 -84636316 - AluSx SINE Alu -5 307 1 324 151 0 25 chr6 97778926 97778994 -84636248 - AluJo SINE Alu -167 135 85 375 318 36 9 chr6 97778997 97779107 -84636135 - MIR SINE MIR -78 130 18 707 287 62 0 chr6 97779225 97779434 -84635808 + MIR SINE MIR 13 234 -28 2092 153 0 0 chr6 97779605 97779913 -84635329 + AluJo SINE Alu 1 308 -4 907 289 41 65 chr6 97779945 97781101 -84634141 + L1PB2 LINE L1 5378 5922 -229 3681 157 15 62 chr6 97780010 97780238 -84635004 + L1MB7 LINE L1 5451 5688 -496 2272 102 3 3 chr6 97780238 97780543 -84634699 - AluSp SINE Alu -8 305 1 3681 157 15 62 chr6 97780543 97780698 -84634544 + L1MB7 LINE L1 5688 5849 -335 1697 186 3 7 chr6 97780698 97780993 -84634249 + AluJo SINE Alu 1 294 -18 3681 157 15 62 chr6 97780993 97781102 -84634140 + L1MB7 LINE L1 5849 5962 -222 2425 93 3 0 chr6 97781102 97781412 -84633830 - AluSx SINE Alu 0 312 2 3681 157 15 62 chr6 97781412 97781637 -84633605 + L1MB7 LINE L1 5962 6136 -48 1213 167 108 66 chr6 97781645 97781933 -84633309 + AluJo SINE Alu 4 303 -9 207 0 0 0 chr6 97781956 97781979 -84633263 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1812 71 4 0 chr6 97782118 97782344 -84632898 + AluY SINE Alu 83 309 -2 1845 38 5 0 chr6 97782439 97782649 -84632593 + AluSp SINE Alu 85 295 -18 2072 120 13 0 chr6 97783166 97783465 -84631777 - AluSx SINE Alu -9 303 1 350 240 128 67 chr6 97783574 97783753 -84631489 + MIR SINE MIR 2 191 -71 1969 128 21 0 chr6 97784252 97784540 -84630702 - AluSx SINE Alu -18 294 1 985 108 0 15 chr6 97784853 97785163 -84630079 - FLAM_C SINE Alu 0 310 3 617 241 110 84 chr6 97785164 97785545 -84629697 + L2 LINE L2 2923 3313 0 21 0 0 0 chr6 97785714 97785735 -84629507 + AT_rich Low_complexity Low_complexity 1 21 0 241 282 51 0 chr6 97785741 97785819 -84629423 - MIR SINE MIR -65 197 116 1711 144 49 46 chr6 97785822 97786127 -84629115 + AluJo SINE Alu 1 306 -6 1769 115 66 28 chr6 97786356 97786643 -84628599 + AluSx SINE Alu 1 298 -14 1129 160 6 6 chr6 97786691 97786872 -84628370 + AluJo SINE Alu 111 291 -21 835 188 0 0 chr6 97786995 97787123 -84628119 - FLAM_A SINE Alu -5 128 1 181 74 0 0 chr6 97787511 97787538 -84627704 + L2 LINE L2 3287 3313 0 2173 113 0 0 chr6 97787587 97787906 -84627336 + AluSx SINE Alu 1 319 0 2723 138 38 17 chr6 97787980 97788400 -84626842 + MSTB1 LTR MaLR 2 430 -2 2130 126 7 0 chr6 97788416 97788718 -84626524 - AluSx SINE Alu -7 305 2 2192 255 164 41 chr6 97788954 97789368 -84625874 - L2 LINE L2 -32 3281 2919 2075 117 0 0 chr6 97789368 97789663 -84625579 - AluSx SINE Alu 0 312 21 2192 255 164 41 chr6 97789663 97790191 -84625051 - L2 LINE L2 -394 2919 2457 2194 130 0 0 chr6 97790191 97790490 -84624752 + AluSx SINE Alu 1 299 -13 2192 255 164 41 chr6 97790490 97790813 -84624429 - L2 LINE L2 -856 2457 1826 233 315 99 0 chr6 97791367 97791478 -84623764 + MIR SINE MIR 83 204 -58 1416 181 35 35 chr6 97793503 97793785 -84621457 - AluJo SINE Alu -20 292 11 619 209 170 0 chr6 97794004 97794157 -84621085 + MER58A DNA MER1_type 46 224 0 1315 167 42 23 chr6 97794175 97794438 -84620804 + AluJo SINE Alu 45 312 0 587 248 0 0 chr6 97794688 97794801 -84620441 + AluJo SINE Alu 1 113 -199 289 236 28 0 chr6 97794960 97795032 -84620210 + L1MC4 LINE L1 7421 7494 -548 611 193 0 18 chr6 97795280 97795394 -84619848 + FLAM_A SINE Alu 25 136 -6 590 243 45 25 chr6 97795448 97795650 -84619592 + L1MC4 LINE L1 7273 7478 -564 1039 162 5 26 chr6 97795674 97795865 -84619377 + AluJo SINE Alu 120 306 -6 589 169 93 0 chr6 97795984 97796102 -84619140 + L1MC4 LINE L1 7914 8042 0 1322 87 0 17 chr6 97796103 97796275 -84618967 - AluSp SINE Alu -15 298 130 271 313 31 16 chr6 97797133 97797261 -84617981 + L1M4 LINE L1 4759 4888 -1258 300 158 0 0 chr6 97798584 97798641 -84616601 + (TA)n Simple_repeat Simple_repeat 2 58 0 2035 119 13 3 chr6 97798704 97799006 -84616236 - AluSx SINE Alu -7 305 1 204 40 0 0 chr6 97799582 97799607 -84615635 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 960 145 0 0 chr6 97799626 97799764 -84615478 + FLAM_C SINE Alu 3 140 -3 21 57 0 0 chr6 97799856 97799891 -84615351 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr6 97799932 97799963 -84615279 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2489 77 0 0 chr6 97800152 97800462 -84614780 + AluY SINE Alu 1 310 -1 295 228 54 87 chr6 97800625 97800774 -84614468 + L1ME4a LINE L1 5944 6087 -34 2233 104 0 43 chr6 97801418 97801744 -84613498 - AluSx SINE Alu 0 312 1 483 254 50 91 chr6 97801954 97802298 -84612944 + L1MC4a LINE L1 5653 5981 -140 28 48 0 0 chr6 97802355 97802397 -84612845 + AT_rich Low_complexity Low_complexity 1 42 0 723 245 151 0 chr6 97802831 97803023 -84612219 - MIR SINE MIR -24 238 18 2309 98 3 0 chr6 97803166 97803461 -84611781 + AluSp SINE Alu 1 296 -17 29 70 0 0 chr6 97804440 97804497 -84610745 + AT_rich Low_complexity Low_complexity 1 57 0 250 195 98 24 chr6 97804548 97804630 -84610612 - L3 LINE CR1 -820 757 670 273 370 34 0 chr6 97804675 97804794 -84610448 + MIR SINE MIR 20 142 -120 21 0 0 0 chr6 97805455 97805476 -84609766 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 97805530 97805551 -84609691 + AT_rich Low_complexity Low_complexity 1 21 0 1238 129 0 0 chr6 97806460 97806631 -84608611 - AluSg/x SINE Alu -5 305 135 231 36 0 0 chr6 97806686 97806714 -84608528 + (TTC)n Simple_repeat Simple_repeat 2 29 0 753 174 0 0 chr6 97806914 97807035 -84608207 + FLAM_A SINE Alu 2 122 -11 302 151 12 116 chr6 97807094 97807150 -84608092 + MER116 DNA Mariner 2 48 -32 1938 137 3 42 chr6 97807150 97807463 -84607779 - AluSx SINE Alu -11 301 1 302 151 12 116 chr6 97807463 97807492 -84607750 + MER116 DNA Mariner 48 78 -2 1652 178 0 14 chr6 97807548 97807834 -84607408 + AluJb SINE Alu 1 282 -30 316 200 14 0 chr6 97808208 97808278 -84606964 + MIR SINE MIR 73 143 -119 1575 170 87 7 chr6 97808532 97808808 -84606434 - AluJb SINE Alu -14 298 1 313 215 8 85 chr6 97808864 97808994 -84606248 + L1M4 LINE L1 4915 5034 -1112 456 227 147 98 chr6 97809097 97809485 -84605757 + LTR1B LTR ERV1 420 826 0 401 136 0 0 chr6 97809486 97809545 -84605697 + Alu SINE Alu 239 297 -15 2499 58 7 0 chr6 97809546 97809838 -84605404 + AluSg SINE Alu 1 294 -16 885 200 42 0 chr6 97810360 97810525 -84604717 - FAM SINE Alu -3 172 1 2231 129 0 3 chr6 97810794 97811103 -84604139 - AluSq SINE Alu -5 308 1 267 167 0 0 chr6 97811346 97811388 -84603854 - FLAM SINE Alu -13 120 79 237 158 0 0 chr6 97811385 97811423 -84603819 - Alu SINE Alu -137 166 129 * 1983 112 53 7 chr6 97812062 97812347 -84602895 + AluSx SINE Alu 1 298 -14 290 254 114 46 chr6 97812351 97812481 -84602761 + MIR SINE MIR 15 153 -55 208 278 0 0 chr6 97812622 97812676 -84602566 + L2 LINE L2 3255 3308 -5 1987 122 7 18 chr6 97812910 97813227 -84602015 - AluSx SINE Alu 0 314 1 2349 74 10 13 chr6 97816501 97816811 -84598431 + AluSg SINE Alu 1 309 -1 2296 91 31 0 chr6 97817114 97817401 -84597841 - AluSx SINE Alu -15 297 2 261 324 27 45 chr6 97817452 97817563 -84597679 + MIR SINE MIR 42 150 -58 1763 152 0 4 chr6 97817760 97818023 -84597219 - AluSx SINE Alu -2 310 49 2466 97 0 0 chr6 97818032 97818341 -84596901 - AluSx SINE Alu -3 309 1 988 320 55 16 chr6 97818393 97818939 -84596303 - L2 LINE L2 -590 2724 2158 1064 166 76 52 chr6 97818945 97819011 -84596231 + MER33 DNA MER1_type 1 64 -2521 2329 80 7 10 chr6 97819011 97819310 -84595932 + AluY SINE Alu 1 298 -13 1064 166 76 52 chr6 97819310 97819532 -84595710 + MER33 DNA MER1_type 64 296 -28 1150 189 66 9 chr6 97819574 97819802 -84595440 + AluJo SINE Alu 1 241 -71 365 239 46 9 chr6 97819808 97819917 -84595325 + LTR1B LTR ERV1 33 145 -681 552 212 97 76 chr6 97820243 97820495 -84594747 + MLT1H LTR MaLR 3 298 -251 1450 183 22 64 chr6 97820572 97820884 -84594358 - AluJo SINE Alu -13 299 1 195 283 152 0 chr6 97821019 97821111 -84594131 + MIR SINE MIR 89 194 -68 672 126 10 0 chr6 97822287 97822390 -84592852 + FLAM_C SINE Alu 23 126 -17 2208 107 3 0 chr6 97822503 97822813 -84592429 + AluY SINE Alu 1 311 0 1220 166 40 72 chr6 97823515 97823626 -84591616 + AluJb SINE Alu 25 138 -174 2162 119 0 13 chr6 97823626 97823928 -84591314 + AluSg SINE Alu 1 298 -12 1220 166 40 72 chr6 97823928 97824094 -84591148 + AluJb SINE Alu 138 293 -19 2298 105 0 0 chr6 97825345 97825641 -84589601 + AluSq SINE Alu 1 296 -17 2180 117 0 0 chr6 97825652 97825943 -84589299 + AluSx SINE Alu 1 291 -21 3001 167 36 61 chr6 97826302 97826741 -84588501 + L1MA7 LINE L1 5600 6016 -275 2436 72 0 20 chr6 97826741 97827046 -84588196 + AluY SINE Alu 1 299 -12 3001 167 36 61 chr6 97827046 97827306 -84587936 + L1MA7 LINE L1 6016 6281 -10 24 0 0 0 chr6 97827311 97827335 -84587907 + AT_rich Low_complexity Low_complexity 1 24 0 325 180 90 40 chr6 97827796 97827896 -84587346 - MIR SINE MIR -58 204 100 1738 175 13 7 chr6 97828635 97828938 -84586304 + AluJb SINE Alu 1 305 -7 363 168 0 119 chr6 97829212 97829313 -84585929 + MER106B DNA MER1_type 61 149 -910 1623 193 0 4 chr6 97829795 97830069 -84585173 + AluJo SINE Alu 1 273 -39 203 276 190 9 chr6 97830069 97830185 -84585057 - L2 LINE L2 0 3313 3177 1321 179 5 5 chr6 97830185 97830403 -84584839 + AluJb SINE Alu 1 218 -94 292 310 68 42 chr6 97830411 97830753 -84584489 - L2 LINE L2 -178 3135 2751 249 235 59 0 chr6 97830759 97830827 -84584415 + FLAM SINE Alu 55 126 -7 2056 77 11 7 chr6 97830839 97831112 -84584130 + AluY SINE Alu 1 274 -37 201 359 152 7 chr6 97831148 97831293 -84583949 - L2 LINE L2 -597 2717 2552 789 173 0 0 chr6 97831349 97831476 -84583766 - FLAM_C SINE Alu -6 127 1 734 261 90 5 chr6 97831538 97831749 -84583493 + MIR SINE MIR 12 240 -22 2078 125 0 13 chr6 97831875 97832178 -84583064 + AluSx SINE Alu 1 299 -13 333 257 0 9 chr6 97833073 97833178 -84582064 + L1MEc LINE L1 2329 2432 -3964 1985 123 14 3 chr6 97833337 97833622 -84581620 + AluSq SINE Alu 1 288 -25 1703 138 48 24 chr6 97833626 97833917 -84581325 + AluJb SINE Alu 1 298 -14 1524 176 3 46 chr6 97833951 97834046 -84581196 + AluJo SINE Alu 1 99 -213 2540 97 22 11 chr6 97834046 97834406 -84580836 + THE1B LTR MaLR 1 364 0 1524 176 3 46 chr6 97834406 97834612 -84580630 + AluJo SINE Alu 99 289 -23 25 0 0 0 chr6 97834615 97834640 -84580602 + AT_rich Low_complexity Low_complexity 1 25 0 2542 42 7 19 chr6 97834988 97835298 -84579944 + AluY SINE Alu 1 306 -5 242 303 82 16 chr6 97835365 97835487 -84579755 + L1ME LINE L1 5528 5657 -464 1769 161 0 11 chr6 97835498 97835783 -84579459 + AluJb SINE Alu 1 282 -30 1873 172 3 3 chr6 97836179 97836476 -84578766 - AluJb SINE Alu -15 297 1 1070 150 13 167 chr6 97836552 97836673 -84578569 + AluJo SINE Alu 34 81 -231 1997 129 0 32 chr6 97836673 97836982 -84578260 + AluSx SINE Alu 1 299 -13 1070 150 13 167 chr6 97836982 97837166 -84578076 + AluJo SINE Alu 81 292 -20 380 217 160 0 chr6 97837203 97837309 -84577933 - L1M4 LINE L1 -1808 4338 4216 1815 146 20 0 chr6 97837323 97837618 -84577624 - AluJb SINE Alu -5 307 7 814 294 104 16 chr6 97837632 97838211 -84577031 - L1ME LINE L1 -4814 1582 953 384 172 0 91 chr6 97838219 97838318 -84576924 - FLAM_A SINE Alu -1 132 43 388 273 161 17 chr6 97838322 97838561 -84576681 - L1ME LINE L1 -5311 894 664 * 585 279 157 50 chr6 97838539 97839173 -84576069 - L1ME LINE L1 -5662 734 26 2188 120 3 0 chr6 97839173 97839481 -84575761 + AluJb SINE Alu 1 309 -3 585 279 157 50 chr6 97839481 97839503 -84575739 - L1ME LINE L1 -6370 26 8 1854 146 0 62 chr6 97839598 97839732 -84575510 + AluJb SINE Alu 12 153 -159 1968 153 0 0 chr6 97839732 97840086 -84575156 + AluSx SINE Alu 1 354 0 1854 146 0 62 chr6 97840086 97840271 -84574971 + AluJb SINE Alu 153 312 0 1408 217 67 64 chr6 97840341 97840401 -84574841 - MLT1C LTR MaLR 0 467 409 2333 113 0 0 chr6 97840401 97840711 -84574531 + AluSx SINE Alu 1 310 -2 1408 217 67 64 chr6 97840711 97840964 -84574278 - MLT1C LTR MaLR -58 409 150 1836 128 35 0 chr6 97840964 97841222 -84574020 + AluSx SINE Alu 2 268 -44 1408 217 67 64 chr6 97841222 97841373 -84573869 - MLT1C LTR MaLR -317 150 1 532 40 0 15 chr6 97841763 97841840 -84573402 + pTR5 LTR ERV1 197 2020 -418 369 220 36 54 chr6 97841845 97841956 -84573286 + LTR30 LTR ERV1 372 642 -80 2133 92 16 10 chr6 97841956 97842260 -84572982 + pTR5 LTR ERV1 79 384 -2054 1520 184 37 32 chr6 97842263 97842611 -84572631 + L1MB7 LINE L1 5835 6184 0 1539 179 144 52 chr6 97842619 97842729 -84572513 + L1MD2 LINE L1 5821 5919 -440 2162 136 3 0 chr6 97842729 97843037 -84572205 - AluSx SINE Alu -3 309 1 1564 181 62 4 chr6 97843040 97843316 -84571926 - AluJo SINE Alu -20 292 1 1539 179 144 52 chr6 97843316 97843680 -84571562 + L1MD2 LINE L1 5920 6343 -16 615 207 18 0 chr6 97843780 97843891 -84571351 + AluJb SINE Alu 180 292 -20 511 264 149 7 chr6 97844118 97844367 -84570875 - LTR35 LTR ERV1 0 622 403 1752 137 12 4 chr6 97844804 97845059 -84570183 + AluSx SINE Alu 1 257 -55 801 126 7 15 chr6 97845285 97845420 -84569822 - L1MB3 LINE L1 -2 6181 6048 961 141 73 17 chr6 97846986 97847163 -84568079 - AluJo SINE Alu -6 306 120 1631 164 3 57 chr6 97847369 97847667 -84567575 + AluJo SINE Alu 1 282 -30 2427 88 0 7 chr6 97847710 97848017 -84567225 + AluSq SINE Alu 1 305 -8 764 144 59 20 chr6 97848192 97848345 -84566897 - L1ME3A LINE L1 -4 6166 6008 2069 123 25 0 chr6 97848770 97849055 -84566187 + AluSx SINE Alu 1 292 -20 995 208 0 24 chr6 97849368 97849575 -84565667 + MER105 DNA DNA 2 203 -1 236 286 33 22 chr6 97850136 97850227 -84565015 + L1ME4a LINE L1 5513 5604 -517 2052 114 4 0 chr6 97850239 97850511 -84564731 + AluSx SINE Alu 1 273 -39 2014 149 3 3 chr6 97850553 97850849 -84564393 + AluSx SINE Alu 1 296 -16 334 238 251 41 chr6 97850931 97851318 -84563924 + L1ME4a LINE L1 5653 6120 -1 1826 127 60 3 chr6 97851321 97851605 -84563637 - AluSg SINE Alu -10 300 1 1100 70 0 0 chr6 97851605 97851734 -84563508 - AluSg SINE Alu -177 133 5 2455 84 0 0 chr6 97852970 97853269 -84561973 - AluSq SINE Alu -14 299 1 1972 118 33 0 chr6 97853281 97853576 -84561666 - AluSc SINE Alu 0 304 1 1633 188 64 6 chr6 97853829 97854159 -84561083 - L1ME1 LINE L1 -57 6109 5761 268 151 19 0 chr6 97854392 97854445 -84560797 - MER5B DNA MER1_type 0 178 125 201 162 0 0 chr6 97854448 97854485 -84560757 + A-rich Low_complexity Low_complexity 1 37 0 455 205 0 0 chr6 97854500 97854578 -84560664 + MER81 DNA DNA 1 78 -36 338 195 9 71 chr6 97854587 97854700 -84560542 + MER5B DNA MER1_type 70 175 -3 1762 127 21 103 chr6 97857897 97858030 -84557212 + AluJo SINE Alu 1 143 -169 2138 132 0 3 chr6 97858030 97858325 -84556917 + AluSx SINE Alu 1 294 -18 1762 127 21 103 chr6 97858325 97858531 -84556711 + AluJo SINE Alu 143 312 0 468 278 66 7 chr6 97858878 97859029 -84556213 + MER5B DNA MER1_type 3 162 -16 726 230 23 0 chr6 97859105 97859279 -84555963 + MER5B DNA MER1_type 1 178 0 266 266 81 7 chr6 97862366 97862586 -84552656 - L1ME4a LINE L1 -185 5936 5696 2330 108 0 0 chr6 97863522 97863819 -84551423 - AluSx SINE Alu -15 297 1 309 190 52 0 chr6 97864197 97864255 -84550987 - Charlie1 DNA MER1_type -1 2760 2700 636 193 0 73 chr6 97864415 97864451 -84550791 - FLAM_C SINE Alu -172 140 103 2451 80 0 13 chr6 97864451 97864763 -84550479 + AluY SINE Alu 1 308 -3 636 193 0 73 chr6 97864763 97864876 -84550366 - FLAM_C SINE Alu -209 103 2 253 259 82 59 chr6 97864880 97865015 -84550227 - MIR3 SINE MIR -67 141 4 331 216 137 10 chr6 97865214 97865316 -84549926 + MER91C DNA MER1_type 26 140 0 931 167 86 0 chr6 97866024 97866198 -84549044 + MER5A DNA MER1_type 1 189 0 551 209 80 61 chr6 97866228 97866391 -84548851 - MER91A DNA MER1_type 0 196 31 223 154 0 0 chr6 97866670 97866709 -84548533 + G-rich Low_complexity Low_complexity 1 39 0 255 284 74 11 chr6 97868077 97868172 -84547070 + L2 LINE L2 3171 3271 -1 228 220 130 73 chr6 97868549 97868668 -84546574 - L1ME4a LINE L1 -5 6116 5982 2258 115 0 0 chr6 97868668 97868964 -84546278 + AluSx SINE Alu 1 296 -16 228 220 130 73 chr6 97868964 97869021 -84546221 - L1ME4a LINE L1 -139 5982 5930 511 206 103 64 chr6 97869085 97869289 -84545953 - L1MC4 LINE L1 0 8042 7831 1749 162 20 7 chr6 97869405 97869702 -84545540 - AluSx SINE Alu -11 301 1 1422 98 0 0 chr6 97870789 97870963 -84544279 - AluSx SINE Alu -77 235 62 195 279 128 12 chr6 97871612 97871698 -84543544 - L2 LINE L2 -24 3248 3153 2428 141 30 35 chr6 97871885 97872159 -84543083 - MSTB1 LTR MaLR 0 432 158 2300 67 0 7 chr6 97872159 97872469 -84542773 + AluY SINE Alu 5 312 0 2428 141 30 35 chr6 97872469 97872627 -84542615 - MSTB1 LTR MaLR -274 158 1 1236 148 50 5 chr6 97876090 97876292 -84538950 - AluJb SINE Alu -16 296 86 1480 167 22 22 chr6 97878107 97878382 -84536860 + AluJo SINE Alu 16 290 -22 1217 171 159 8 chr6 97878459 97878717 -84536525 - AluSx SINE Alu -15 297 1 1676 132 127 15 chr6 97879797 97880137 -84535105 - L1MB8 LINE L1 0 6178 5801 1235 208 51 32 chr6 97880149 97880348 -84534894 - L1MB8 LINE L1 -540 5638 5426 2183 127 7 3 chr6 97880348 97880648 -84534594 - AluSx SINE Alu -11 301 1 1235 208 51 32 chr6 97880648 97880791 -84534451 - L1MB8 LINE L1 -752 5426 5287 33 25 0 0 chr6 97881231 97881271 -84533971 + AT_rich Low_complexity Low_complexity 1 40 0 767 216 20 0 chr6 97881694 97881847 -84533395 + AluJb SINE Alu 134 289 -23 252 221 179 0 chr6 97882538 97882633 -84532609 + MIR SINE MIR 117 228 -34 262 102 0 20 chr6 97882659 97882708 -84532534 + Alu SINE Alu 1 48 -252 1084 94 0 0 chr6 97882714 97882852 -84532390 + AluSg/x SINE Alu 152 289 -21 235 226 271 0 chr6 97883322 97883477 -84531765 + MIR SINE MIR 46 242 -20 25 31 0 0 chr6 97883810 97883842 -84531400 + AT_rich Low_complexity Low_complexity 1 32 0 2331 86 17 3 chr6 97884261 97884563 -84530679 + AluSq SINE Alu 1 306 -7 2106 119 3 20 chr6 97885395 97885698 -84529544 - AluSx SINE Alu -14 298 1 23 33 0 0 chr6 97887558 97887588 -84527654 + AT_rich Low_complexity Low_complexity 1 30 0 410 265 177 0 chr6 97888412 97888559 -84526683 + MIR SINE MIR 56 228 -34 1076 197 8 74 chr6 97889660 97889904 -84525338 + MER8 DNA MER2_type 12 239 0 1603 156 45 21 chr6 97890461 97890749 -84524493 - AluJo SINE Alu -12 300 6 1868 142 8 0 chr6 97891364 97891631 -84523611 + AluJo SINE Alu 25 293 -19 719 149 0 0 chr6 97892254 97892361 -84522881 + AluJo/FLAM SINE Alu 2 108 -204 1461 156 3 90 chr6 97892361 97892682 -84522560 + AluJb SINE Alu 16 308 -4 376 194 54 151 chr6 97892874 97893060 -84522182 - MIR SINE MIR -48 214 47 2289 90 0 31 chr6 97894700 97895022 -84520220 + AluSx SINE Alu 1 312 0 2019 90 32 4 chr6 97895029 97895306 -84519936 + AluSx SINE Alu 21 305 -7 22 35 0 0 chr6 97896594 97896623 -84518619 + AT_rich Low_complexity Low_complexity 1 29 0 357 219 0 0 chr6 97897077 97897150 -84518092 + HAL1 LINE L1 2435 2507 0 224 272 74 0 chr6 97897166 97897247 -84517995 - MIR SINE MIR -119 143 57 1368 114 24 0 chr6 97898338 97898549 -84516693 + L1MA5 LINE L1 6083 6298 -2 305 259 92 40 chr6 97898593 97898767 -84516475 + MIR SINE MIR 77 259 -3 504 146 0 0 chr6 97899287 97899369 -84515873 + L1MA5 LINE L1 6206 6287 -13 262 300 43 38 chr6 97899644 97899854 -84515388 + L1ME LINE L1 5688 5898 -223 360 329 79 32 chr6 97900734 97900950 -84514292 + MIR SINE MIR 30 255 -7 1242 129 158 0 chr6 97901403 97901693 -84513549 + Tigger3(Golem) DNA MER2_type 1 3015 -14 889 191 8 133 chr6 97902692 97902762 -84512480 + MER58A DNA MER1_type 1 78 -2342 1562 173 32 18 chr6 97902762 97903046 -84512196 + AluJo SINE Alu 1 288 -24 889 191 8 133 chr6 97903046 97903231 -84512011 + MER58A DNA MER1_type 78 224 0 192 40 0 0 chr6 97903316 97903341 -84511901 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2317 106 3 0 chr6 97903553 97903854 -84511388 - AluSp SINE Alu -11 302 1 1777 180 7 7 chr6 97903856 97904151 -84511091 - AluJb SINE Alu -17 295 1 23 68 0 0 chr6 97904404 97904448 -84510794 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr6 97905271 97905303 -84509939 + AT_rich Low_complexity Low_complexity 1 32 0 236 288 0 0 chr6 97906319 97906385 -84508857 + A-rich Low_complexity Low_complexity 1 66 0 230 226 36 48 chr6 97906934 97907018 -84508224 + MIR3 SINE MIR 119 201 -7 408 226 38 30 chr6 97907209 97907320 -84507922 + L1ME4a LINE L1 5772 5886 -235 2422 88 0 25 chr6 97907320 97907639 -84507603 + AluY SINE Alu 1 311 0 408 226 38 30 chr6 97907639 97907660 -84507582 + L1ME4a LINE L1 5886 5905 -216 270 237 137 15 chr6 97907689 97907820 -84507422 + L1ME4a LINE L1 5975 6121 0 1771 150 10 3 chr6 97908701 97908994 -84506248 - AluJo SINE Alu -17 295 1 2239 118 0 3 chr6 97909094 97909400 -84505842 + AluSg1 SINE Alu 1 305 -4 2086 136 0 3 chr6 97909425 97909733 -84505509 + AluSx SINE Alu 1 307 -5 1478 147 5 0 chr6 97909930 97910148 -84505094 - AluSg/x SINE Alu -9 303 85 840 152 0 14 chr6 97910155 97910300 -84504942 - FLAM_C SINE Alu 0 143 1 860 205 20 13 chr6 97910331 97910482 -84504760 + FRAM SINE Alu 1 151 -25 364 262 75 86 chr6 97910499 97910778 -84504464 - L1MC4a LINE L1 -1959 5849 5574 235 100 0 40 chr6 97913043 97913093 -84502149 + (TTA)n Simple_repeat Simple_repeat 1 48 0 267 156 0 0 chr6 97913365 97913410 -84501832 - MIR SINE MIR -63 145 101 1275 110 0 0 chr6 97913590 97913753 -84501489 + AluSc SINE Alu 1 163 -146 288 0 0 0 chr6 97913807 97913839 -84501403 + (TA)n Simple_repeat Simple_repeat 2 33 0 2316 98 0 13 chr6 97913839 97914144 -84501098 - AluSq SINE Alu -11 302 2 457 163 209 0 chr6 97914781 97914867 -84500375 + L1MB5 LINE L1 6012 6115 -59 851 147 0 29 chr6 97915020 97915156 -84500086 + FLAM_C SINE Alu 1 132 -11 1033 209 5 9 chr6 97915166 97915376 -84499866 + AluJo SINE Alu 97 305 -7 24 67 0 0 chr6 97916548 97916593 -84498649 + AT_rich Low_complexity Low_complexity 1 45 0 352 200 0 14 chr6 97920131 97920201 -84495041 - Charlie8 DNA MER1_type -2 2415 2347 347 242 49 58 chr6 97920210 97920352 -84494890 - Charlie8 DNA MER1_type -2143 274 167 245 284 25 0 chr6 97920678 97920759 -84494483 + A-rich Low_complexity Low_complexity 2 84 0 2014 143 7 7 chr6 97920761 97921061 -84494181 - AluSx SINE Alu -12 300 1 578 187 134 8 chr6 97921458 97921592 -84493650 + MER5A DNA MER1_type 39 189 0 2120 78 0 0 chr6 97921660 97921916 -84493326 + AluSc SINE Alu 2 257 -52 641 106 0 71 chr6 97921920 97922033 -84493209 + AluSg/x SINE Alu 204 308 -1 220 417 63 8 chr6 97922463 97922590 -84492652 + L2 LINE L2 3124 3257 -15 214 200 0 55 chr6 97922706 97922761 -84492481 - L2 LINE L2 -6 3266 3215 347 309 28 40 chr6 97922872 97923028 -84492214 - MIR SINE MIR -62 146 3 1963 154 106 14 chr6 97923086 97923443 -84491799 + MLT1B LTR MaLR 1 390 0 2127 138 0 0 chr6 97924839 97925136 -84490106 - AluSx SINE Alu -10 302 6 851 129 8 0 chr6 97925495 97925619 -84489623 - FLAM_C SINE Alu -18 125 1 244 154 0 0 chr6 97925727 97925766 -84489476 - MER63 DNA MER1_type -43 1017 979 391 191 15 0 chr6 97925768 97925836 -84489406 - MER63 DNA MER1_type -311 749 681 1402 175 49 65 chr6 97926013 97926094 -84489148 + AluJb SINE Alu 1 82 -230 2457 66 27 0 chr6 97926094 97926395 -84488847 + AluY SINE Alu 1 309 -2 1402 175 49 65 chr6 97926395 97926621 -84488621 + AluJb SINE Alu 82 303 -9 328 233 38 51 chr6 97927167 97927272 -84487970 - MIR SINE MIR -62 146 59 2220 94 0 10 chr6 97927729 97928036 -84487206 + AluSc SINE Alu 1 304 -5 23 0 0 0 chr6 97928054 97928077 -84487165 + AT_rich Low_complexity Low_complexity 1 23 0 2088 136 3 0 chr6 97929811 97930112 -84485130 + AluSx SINE Alu 1 302 -10 1760 158 15 0 chr6 97932555 97932820 -84482422 + AluSx SINE Alu 1 269 -43 22 35 0 0 chr6 97933922 97933951 -84481291 + AT_rich Low_complexity Low_complexity 1 29 0 1711 147 55 0 chr6 97933958 97934230 -84481012 + AluJo SINE Alu 1 287 -25 318 304 16 0 chr6 97935253 97935378 -84479864 + L1ME4a LINE L1 5742 5868 -253 368 342 35 25 chr6 97936985 97937187 -84478055 - MIR SINE MIR -10 252 49 1096 138 107 58 chr6 97937197 97937422 -84477820 + MER46A DNA MER2_type 1 236 0 287 291 77 64 chr6 97937886 97938106 -84477136 + MLT1J LTR MaLR 289 511 0 1531 168 7 37 chr6 97938223 97938520 -84476722 - AluJb SINE Alu -24 288 1 2178 112 3 7 chr6 97938619 97938922 -84476320 + AluSg1 SINE Alu 1 302 -7 398 261 131 89 chr6 97940838 97941252 -84473990 + L1MC/D LINE L1 4873 5313 -833 2227 111 3 3 chr6 97941252 97941549 -84473693 - AluSx SINE Alu -15 297 1 398 261 131 89 chr6 97941549 97941639 -84473603 + L1MC/D LINE L1 5313 5398 -748 308 272 37 69 chr6 97941888 97942108 -84473134 + L1MC/D LINE L1 5604 5822 -299 270 284 186 26 chr6 97943990 97944184 -84471058 + MIR SINE MIR 8 232 -30 1718 187 48 12 chr6 97944776 97945107 -84470135 - MER2 DNA MER2_type -1 343 1 1008 268 53 22 chr6 97945988 97946309 -84468933 - L1ME LINE L1 -533 5633 5303 1224 252 67 61 chr6 97946331 97946606 -84468636 - L1ME LINE L1 -905 5241 4960 2219 104 3 10 chr6 97946606 97946905 -84468337 - AluSx SINE Alu -15 297 1 1224 252 67 61 chr6 97946905 97947169 -84468073 - L1ME LINE L1 -1186 4960 4699 450 184 69 0 chr6 97947220 97947307 -84467935 + Charlie1a DNA MER1_type 55 147 -1308 2495 218 140 32 chr6 97947307 97947398 -84467844 + Charlie1a DNA MER1_type 493 573 -2188 2176 112 3 3 chr6 97947398 97947701 -84467541 + AluSq SINE Alu 1 303 -10 2495 218 140 32 chr6 97947701 97947766 -84467476 + Charlie1a DNA MER1_type 573 630 -2131 2119 124 0 3 chr6 97947766 97948057 -84467185 + AluSx SINE Alu 1 290 -22 2495 218 140 32 chr6 97948057 97948261 -84466981 + Charlie1a DNA MER1_type 630 811 -1950 2137 98 21 0 chr6 97948261 97948547 -84466695 - AluY SINE Alu -19 292 1 2495 218 140 32 chr6 97948547 97949053 -84466189 + Charlie1a DNA MER1_type 811 1455 0 1647 209 60 17 chr6 97949163 97949565 -84465677 + L1ME1 LINE L1 5745 6163 -3 1270 147 161 19 chr6 97950015 97950331 -84464911 - MER46B DNA MER2_type 0 236 1 620 267 123 30 chr6 97950646 97950882 -84464360 + MIR SINE MIR 5 262 0 1882 176 0 3 chr6 97951687 97951994 -84463248 + AluJb SINE Alu 1 306 -6 835 196 7 26 chr6 97953574 97953727 -84461515 - FRAM SINE Alu -22 154 5 320 285 126 26 chr6 97953850 97954001 -84461241 - MIR3 SINE MIR -28 180 15 697 218 0 15 chr6 97954054 97954187 -84461055 + FLAM_C SINE Alu 1 131 -2 839 196 80 30 chr6 97954499 97954698 -84460544 + MER3 DNA MER1_type 1 209 0 21 0 0 0 chr6 97954698 97954719 -84460523 + AT_rich Low_complexity Low_complexity 1 21 0 1496 170 73 67 chr6 97954932 97955273 -84459969 - MER2 DNA MER2_type 0 344 2 230 359 174 5 chr6 97957291 97957434 -84457808 + MIR SINE MIR 20 206 -56 2265 71 41 10 chr6 97957434 97957729 -84457513 + AluY SINE Alu 1 304 -7 230 359 174 5 chr6 97957729 97957780 -84457462 + MIR SINE MIR 206 247 -15 337 329 36 15 chr6 97957982 97958119 -84457123 + MER5A DNA MER1_type 35 174 -15 867 218 193 46 chr6 97958743 97959091 -84456151 + L2 LINE L2 2262 2660 -654 469 238 30 0 chr6 97959096 97959197 -84456045 + L2 LINE L2 3210 3313 0 213 261 46 15 chr6 97959614 97959679 -84455563 + L2 LINE L2 3246 3312 -1 182 300 0 0 chr6 97959944 97959984 -84455258 - L2 LINE L2 -18 3254 3215 300 328 48 43 chr6 97961026 97961213 -84454029 + MIR SINE MIR 35 219 -43 262 288 144 27 chr6 97963281 97963427 -84451815 - MIR SINE MIR -12 250 88 22 35 0 0 chr6 97963770 97963799 -84451443 + AT_rich Low_complexity Low_complexity 1 29 0 963 57 73 0 chr6 97963962 97964085 -84451157 + AluSg/x SINE Alu 169 300 -12 230 59 0 0 chr6 97964379 97964413 -84450829 + L1MB8 LINE L1 6144 6177 -1 1572 192 0 20 chr6 97964517 97964819 -84450423 + AluJb SINE Alu 1 296 -16 498 179 126 0 chr6 97965289 97965384 -84449858 - FRAM SINE Alu -32 144 38 2056 126 13 3 chr6 97966234 97966535 -84448707 + AluSq SINE Alu 1 304 -9 2211 117 0 3 chr6 97967530 97967828 -84447414 + AluSc SINE Alu 1 297 -12 2263 112 0 0 chr6 97967955 97968250 -84446992 - AluSx SINE Alu -17 295 1 1589 199 7 20 chr6 97969246 97969542 -84445700 - AluJo SINE Alu -20 292 1 372 94 0 0 chr6 97969598 97969651 -84445591 + (CA)n Simple_repeat Simple_repeat 2 54 0 1920 135 13 31 chr6 97969846 97970164 -84445078 + AluSx SINE Alu 1 312 0 259 298 21 11 chr6 97971860 97971954 -84443288 - MER5B DNA MER1_type -5 173 79 1703 112 155 0 chr6 97972216 97972491 -84442751 + AluSq SINE Alu 1 314 0 222 105 0 0 chr6 97973328 97973366 -84441876 + (T)n Simple_repeat Simple_repeat 1 38 0 258 264 91 27 chr6 97973888 97973998 -84441244 - L2 LINE L2 0 3272 3156 3387 58 7 0 chr6 97974997 97975413 -84439829 + L1PA8 LINE L1 5710 6128 -44 3124 122 26 10 chr6 97975413 97975903 -84439339 + LTR10D LTR ERV1 16 513 0 23 0 0 0 chr6 97975918 97975941 -84439301 + AT_rich Low_complexity Low_complexity 1 23 0 30 89 0 0 chr6 97976762 97976841 -84438401 + AT_rich Low_complexity Low_complexity 1 79 0 2279 118 0 0 chr6 97977670 97977976 -84437266 + AluSx SINE Alu 1 306 -6 1303 169 8 33 chr6 97978114 97978357 -84436885 + AluSg/x SINE Alu 76 312 0 225 0 0 0 chr6 97978359 97978384 -84436858 + (GA)n Simple_repeat Simple_repeat 2 26 0 309 287 20 10 chr6 97978384 97978485 -84436757 + L1MB7 LINE L1 5488 5589 -2219 2075 104 10 3 chr6 97978567 97978855 -84436387 - AluSc SINE Alu -19 290 1 1012 210 0 18 chr6 97979038 97979205 -84436037 - FRAM SINE Alu -2 164 1 2046 95 77 0 chr6 97979407 97979680 -84435562 + AluSc SINE Alu 1 294 -15 1528 160 22 15 chr6 97980189 97980457 -84434785 + AluJb SINE Alu 13 282 -30 572 257 76 0 chr6 97980568 97980712 -84434530 + MER5A DNA MER1_type 9 163 -26 183 42 0 0 chr6 97981313 97981337 -84433905 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 306 140 120 0 chr6 97981337 97981387 -84433855 - AluS SINE Alu -18 282 227 2384 97 0 0 chr6 97981391 97981691 -84433551 - AluSx SINE Alu -12 300 1 192 337 74 0 chr6 97983573 97983668 -84431574 + MIR SINE MIR 124 225 -37 23 0 0 0 chr6 97983747 97983770 -84431472 + AT_rich Low_complexity Low_complexity 1 23 0 714 180 111 13 chr6 97984309 97984549 -84430693 + L1MB7 LINE L1 5691 5885 -299 1958 155 0 0 chr6 97984617 97984920 -84430322 + AluSx SINE Alu 1 303 -9 1551 219 79 121 chr6 97984944 97985486 -84429756 + LTR8 LTR ERV1 1 564 -127 2163 123 0 0 chr6 97985486 97985786 -84429456 + AluSx SINE Alu 1 300 -12 1551 219 79 121 chr6 97985786 97985798 -84429444 + LTR8 LTR ERV1 564 575 -116 1788 169 17 0 chr6 97985798 97986093 -84429149 + AluSx SINE Alu 1 300 -12 1551 219 79 121 chr6 97986093 97986258 -84428984 + LTR8 LTR ERV1 575 691 0 619 168 0 19 chr6 97986661 97986768 -84428474 + FRAM SINE Alu 59 163 -13 1214 131 0 0 chr6 97987623 97987799 -84427443 + AluSp SINE Alu 136 311 -2 1848 132 3 45 chr6 97987977 97988080 -84427162 + AluJb SINE Alu 12 118 -194 1930 155 0 0 chr6 97988080 97988370 -84426872 - AluSq SINE Alu -23 290 1 1848 132 3 45 chr6 97988370 97988555 -84426687 + AluJb SINE Alu 118 288 -24 1135 61 88 0 chr6 97988637 97988785 -84426457 - L1PA6 LINE L1 0 6154 5994 204 40 0 0 chr6 97988802 97988827 -84426415 + (A)n Simple_repeat Simple_repeat 1 25 0 183 80 0 0 chr6 97989297 97989322 -84425920 + (GGA)n Simple_repeat Simple_repeat 1 25 0 1505 233 73 63 chr6 97989346 97989931 -84425311 + L1ME3 LINE L1 5488 6078 -84 2276 94 3 38 chr6 97989971 97990323 -84424919 + AluSg SINE Alu 2 342 0 497 66 0 0 chr6 97991278 97991339 -84423903 + Alu SINE Alu 2 62 -248 1946 160 0 0 chr6 97992762 97993056 -84422186 - AluJb SINE Alu -18 294 1 1996 122 4 4 chr6 97994996 97995306 -84419936 + AluSg SINE Alu 1 310 0 852 153 15 0 chr6 97995921 97996052 -84419190 + AluJo SINE Alu 2 134 -178 32 26 0 0 chr6 97996052 97996091 -84419151 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr6 97997075 97997117 -84418125 + AT_rich Low_complexity Low_complexity 1 42 0 747 201 0 8 chr6 97997415 97997549 -84417693 + FLAM_C SINE Alu 1 133 0 282 216 227 41 chr6 97997636 97997733 -84417509 + L2 LINE L2 3186 3300 -13 219 350 43 17 chr6 97997817 97997934 -84417308 - MIR SINE MIR -102 106 4 845 100 0 0 chr6 97998873 97998983 -84416259 - AluSq/x SINE Alu -203 110 1 922 197 66 82 chr6 97998987 97999097 -84416145 - MLT1C LTR MaLR -167 300 190 2233 120 0 0 chr6 97999097 97999406 -84415836 - AluSg SINE Alu -1 309 1 922 197 66 82 chr6 97999406 97999600 -84415642 - MLT1C LTR MaLR -277 190 1 440 218 0 0 chr6 97999602 97999689 -84415553 - MIR SINE MIR -101 161 75 1180 161 16 63 chr6 98000362 98000617 -84414625 - AluJo SINE Alu -3 309 67 2172 246 40 18 chr6 98000749 98001143 -84414099 - L1M4 LINE L1 -2499 3647 3263 2747 148 39 2 chr6 98001143 98001554 -84413688 - MSTB LTR MaLR 0 426 1 2172 246 40 18 chr6 98001554 98001746 -84413496 - L1M4 LINE L1 -2883 3263 3041 2290 110 3 0 chr6 98001746 98002055 -84413187 - AluSq SINE Alu -3 310 1 2172 246 40 18 chr6 98002055 98002150 -84413092 - L1M4 LINE L1 -3105 3041 2950 444 19 0 0 chr6 98003056 98003109 -84412133 + (CA)n Simple_repeat Simple_repeat 2 54 0 252 0 0 0 chr6 98003168 98003196 -84412046 + (T)n Simple_repeat Simple_repeat 1 28 0 3664 50 46 6 chr6 98004369 98004930 -84410312 - MER11A LTR ERVK -457 809 1 1154 101 0 0 chr6 98004931 98005080 -84410162 - AluSc SINE Alu -160 149 1 1361 189 28 45 chr6 98005096 98005425 -84409817 - AluJb SINE Alu 0 324 1 1413 188 68 20 chr6 98005733 98006026 -84409216 - AluJb SINE Alu -1 311 5 702 168 0 0 chr6 98006358 98006471 -84408771 - AluSg/x SINE Alu 0 312 200 2206 85 0 0 chr6 98006696 98006966 -84408276 - AluSg SINE Alu -36 274 5 2167 121 0 0 chr6 98007149 98007446 -84407796 - AluSx SINE Alu -15 297 1 1786 104 55 104 chr6 98007505 98007832 -84407410 - AluSx SINE Alu -1 311 1 192 307 26 44 chr6 98007832 98007938 -84407304 - L2 LINE L2 -561 2753 2648 510 146 24 0 chr6 98008007 98008089 -84407153 - AluJo SINE Alu -13 299 216 1005 182 0 0 chr6 98008092 98008251 -84406991 - AluJo SINE Alu -153 159 1 581 86 49 0 chr6 98008499 98008580 -84406662 - AluSg/x SINE Alu -12 300 216 1782 124 84 7 chr6 98008835 98009108 -84406134 - AluSc SINE Alu -15 294 1 1677 152 0 77 chr6 98009454 98009777 -84405465 - AluJb SINE Alu -10 302 5 1719 166 10 14 chr6 98009794 98010090 -84405152 - AluSx SINE Alu -17 295 1 2280 88 0 25 chr6 98010098 98010416 -84404826 - AluY SINE Alu -1 310 1 455 272 37 31 chr6 98010416 98010520 -84404722 - L1M4 LINE L1 -2293 3853 3746 1905 132 11 0 chr6 98010520 98010792 -84404450 - AluSx SINE Alu -17 295 21 455 272 37 31 chr6 98010792 98010878 -84404364 - L1M4 LINE L1 -2400 3746 3662 2424 80 0 3 chr6 98010896 98011208 -84404034 - AluY SINE Alu 0 311 1 895 126 25 0 chr6 98011320 98011439 -84403803 - FLAM_C SINE Alu -11 122 1 412 240 131 22 chr6 98011508 98011821 -84403421 - L1M4 LINE L1 -2922 3224 2878 1962 126 17 3 chr6 98012105 98012398 -84402844 - AluSq SINE Alu -16 297 1 769 208 10 99 chr6 98012415 98012493 -84402749 - LTR41 LTR ERVL 0 773 690 2147 107 7 13 chr6 98012493 98012802 -84402440 + AluSx SINE Alu 1 307 -5 2458 72 0 0 chr6 98012802 98013107 -84402135 + AluY SINE Alu 1 305 -6 769 208 10 99 chr6 98013107 98013320 -84401922 - LTR41 LTR ERVL -81 692 507 667 229 202 14 chr6 98013499 98013722 -84401520 - LTR41 LTR ERVL -508 265 1 23 33 0 0 chr6 98013919 98013949 -84401293 + AT_rich Low_complexity Low_complexity 1 30 0 568 108 24 0 chr6 98014050 98014133 -84401109 + HY1 scRNA scRNA 2 86 -26 1472 158 0 65 chr6 98014236 98014527 -84400715 - AluJo SINE Alu -25 287 16 2248 108 0 0 chr6 98014528 98014824 -84400418 - AluSg SINE Alu -14 296 1 779 169 0 31 chr6 98014830 98014960 -84400282 - FLAM_C SINE Alu -12 131 6 806 90 45 0 chr6 98015489 98015600 -84399642 + FRAM SINE Alu 60 175 -1 2096 169 14 30 chr6 98015859 98016225 -84399017 - LTR57 LTR ERVL -7 404 45 195 42 0 0 chr6 98016402 98016426 -84398816 + (TG)n Simple_repeat Simple_repeat 1 24 0 2198 100 0 3 chr6 98016426 98016709 -84398533 - AluSq SINE Alu -31 282 1 417 257 45 97 chr6 98016776 98016998 -84398244 - L1ME LINE L1 -472 5649 5444 3068 179 29 14 chr6 98016998 98017551 -84397691 - MER68 LTR ERV1 -1 561 1 417 257 45 97 chr6 98017551 98017616 -84397626 - L1ME LINE L1 -677 5444 5377 2674 52 0 0 chr6 98017628 98017936 -84397306 - AluY SINE Alu -3 308 1 1220 221 131 36 chr6 98017940 98018352 -84396890 + L1ME3A LINE L1 5707 6157 -13 2330 94 0 0 chr6 98018621 98018919 -84396323 - AluSc SINE Alu -11 298 1 1337 153 102 0 chr6 98018952 98019187 -84396055 - L1PB3 LINE L1 -8 6146 5888 2151 110 3 3 chr6 98019638 98019938 -84395304 - AluSq SINE Alu -10 303 4 1484 122 73 4 chr6 98019943 98020188 -84395054 - L1PB3 LINE L1 -248 5906 5645 318 290 97 0 chr6 98020283 98020407 -84394835 - HAL1 LINE L1 -968 1539 1404 368 330 65 28 chr6 98020443 98020615 -84394627 - L1MEd LINE L1 -4960 1159 976 2011 100 43 4 chr6 98020615 98020896 -84394346 - AluSg1 SINE Alu -17 292 1 368 330 65 28 chr6 98020896 98020938 -84394304 - L1MEd LINE L1 -5143 976 937 28 48 0 0 chr6 98021849 98021891 -84393351 + AT_rich Low_complexity Low_complexity 1 42 0 879 137 0 0 chr6 98022659 98022776 -84392466 + FLAM_C SINE Alu 1 117 -16 964 145 0 0 chr6 98023014 98023152 -84392090 - AluSg/x SINE Alu -107 203 66 1027 178 0 0 chr6 98023253 98023422 -84391820 + AluSg/x SINE Alu 125 293 -19 1563 194 17 0 chr6 98023474 98023768 -84391474 - AluJo SINE Alu -9 303 5 632 174 68 38 chr6 98023769 98023901 -84391341 - AluJb SINE Alu -175 137 2 189 267 11 111 chr6 98024351 98024441 -84390801 - MIR SINE MIR -111 97 17 928 196 49 0 chr6 98024741 98024925 -84390317 + AluSp SINE Alu 85 277 -36 2364 80 0 3 chr6 98028392 98028693 -84386549 - AluY SINE Alu -11 300 1 258 232 43 14 chr6 98029132 98029201 -84386041 + L1ME3A LINE L1 6087 6157 -13 1409 110 5 37 chr6 98029309 98029527 -84385715 + AluSg SINE Alu 46 256 -54 849 129 0 50 chr6 98029956 98030096 -84385146 + FLAM_C SINE Alu 1 133 -10 237 86 0 0 chr6 98031408 98031443 -84383799 + Tigger5 DNA MER2_type 2237 2271 -52 316 258 133 33 chr6 98031710 98031830 -84383412 - L2 LINE L2 -3 3269 3138 920 195 74 0 chr6 98031928 98032118 -84383124 + AluJo SINE Alu 83 286 -26 2075 113 7 10 chr6 98032197 98032499 -84382743 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr6 98032537 98032558 -84382684 + AT_rich Low_complexity Low_complexity 1 21 0 2282 114 3 0 chr6 98032568 98032875 -84382367 + AluSq SINE Alu 1 308 -5 542 124 56 0 chr6 98032975 98033064 -84382178 + L1MC1 LINE L1 6240 6333 0 21 0 0 0 chr6 98033088 98033109 -84382133 + AT_rich Low_complexity Low_complexity 1 21 0 2297 94 3 0 chr6 98033112 98033410 -84381832 + AluSp SINE Alu 1 299 -14 2469 69 0 13 chr6 98033415 98033719 -84381523 + AluSc SINE Alu 1 300 -9 2645 51 0 6 chr6 98034224 98034536 -84380706 + AluY SINE Alu 1 310 -1 2134 88 42 0 chr6 98034557 98034840 -84380402 + AluSp SINE Alu 1 295 -18 312 192 212 20 chr6 98034976 98035075 -84380167 + L1MB8 LINE L1 6060 6177 -1 279 230 11 81 chr6 98035099 98035186 -84380056 + L1ME4a LINE L1 5947 6027 -94 2133 119 10 3 chr6 98035728 98036030 -84379212 + AluSq SINE Alu 1 304 -9 1942 234 67 78 chr6 98036251 98036471 -84378771 + MER21B LTR ERV1 98 319 -544 2268 104 3 0 chr6 98036471 98036780 -84378462 + AluSp SINE Alu 1 310 -3 1942 234 67 78 chr6 98036780 98037273 -84377969 + MER21B LTR ERV1 319 803 -60 771 183 0 23 chr6 98037441 98037572 -84377670 + AluJo SINE Alu 3 130 -172 1292 154 112 4 chr6 98037580 98037696 -84377546 + AluSx SINE Alu 14 116 -196 2207 124 3 0 chr6 98037696 98037995 -84377247 + AluSg SINE Alu 1 300 -10 1292 154 112 4 chr6 98037995 98038138 -84377104 + AluSx SINE Alu 116 301 -11 1000 191 12 0 chr6 98038141 98038303 -84376939 + AluJo SINE Alu 137 300 -2 2340 89 0 19 chr6 98038728 98039041 -84376201 + AluSc SINE Alu 1 307 -2 202 242 105 63 chr6 98039228 98039323 -84375919 - MIR3 SINE MIR -5 203 105 2442 71 0 0 chr6 98039910 98040206 -84375036 - AluY SINE Alu -15 296 1 1988 112 57 7 chr6 98040216 98040391 -84374851 - AluSx SINE Alu -1 311 113 183 42 0 0 chr6 98040391 98040415 -84374827 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1988 112 57 7 chr6 98040415 98040535 -84374707 - AluSx SINE Alu -199 113 1 2528 55 0 3 chr6 98041075 98041383 -84373859 + AluY SINE Alu 1 307 -4 950 119 26 17 chr6 98041395 98041644 -84373598 + LTR64 LTR ERVK 201 514 -44 1159 128 41 0 chr6 98041645 98041817 -84373425 - AluSg/x SINE Alu -22 290 112 749 86 11 0 chr6 98041824 98041917 -84373325 + AluSg/x SINE Alu 93 186 -124 457 213 48 100 chr6 98041995 98042204 -84373038 - MER34C LTR ERV1 -351 234 1 * 1648 180 28 37 chr6 98042204 98042529 -84372713 - MLT1A2 LTR MaLR -48 326 5 378 263 59 20 chr6 98042536 98042688 -84372554 - L1MC5 LINE L1 -447 7514 7357 1934 135 0 7 chr6 98042706 98042988 -84372254 + AluSx SINE Alu 1 280 -32 1027 178 0 0 chr6 98043098 98043267 -84371975 + AluSg/x SINE Alu 125 293 -19 1563 194 17 0 chr6 98043319 98043613 -84371629 - AluJo SINE Alu -9 303 5 632 174 68 38 chr6 98043614 98043746 -84371496 - AluJb SINE Alu -175 137 2 189 267 11 111 chr6 98044196 98044286 -84370956 - MIR SINE MIR -111 97 17 1367 87 56 15 chr6 98044586 98044812 -84370430 + AluSp SINE Alu 85 313 0 225 65 0 0 chr6 98044866 98044897 -84370345 - HSMAR1 DNA Mariner 0 1287 1257 1387 154 9 72 chr6 98045291 98045610 -84369632 - AluY SINE Alu -12 299 1 2291 98 10 0 chr6 98045612 98045919 -84369323 - AluY SINE Alu -1 310 1 1001 123 0 7 chr6 98045919 98046057 -84369185 - AluJb SINE Alu -175 137 1 2448 70 0 3 chr6 98049376 98049677 -84365565 - AluY SINE Alu -11 300 1 2011 129 0 10 chr6 98049743 98050037 -84365205 - AluSg SINE Alu -19 291 1 2083 110 33 0 chr6 98050075 98050374 -84364868 + AluSc SINE Alu 1 309 0 2231 104 0 13 chr6 98050383 98050690 -84364552 + AluSg SINE Alu 1 303 -7 22 35 0 0 chr6 98053087 98053116 -84362126 + AT_rich Low_complexity Low_complexity 1 29 0 2123 113 3 7 chr6 98053173 98053457 -84361785 + AluSx SINE Alu 1 283 -29 1726 167 3 44 chr6 98053495 98053812 -84361430 + AluJb SINE Alu 1 304 -8 2038 151 7 0 chr6 98054337 98054642 -84360600 - AluJo SINE Alu -5 307 1 1526 188 45 79 chr6 98054839 98055243 -84359999 + MLT1B LTR MaLR 1 390 0 1806 132 16 64 chr6 98055340 98055651 -84359591 + AluSx SINE Alu 1 296 -16 2046 78 35 85 chr6 98055653 98055799 -84359443 + AluSx SINE Alu 3 126 -186 2324 78 7 0 chr6 98055799 98056093 -84359149 + AluSx SINE Alu 1 296 -16 2046 78 35 85 chr6 98056093 98056265 -84358977 + AluSx SINE Alu 126 305 -7 1277 80 11 23 chr6 98056266 98056441 -84358801 + AluSc SINE Alu 1 173 -136 2044 135 0 22 chr6 98056793 98057111 -84358131 + AluSx SINE Alu 1 311 -1 238 267 0 0 chr6 98057372 98057432 -84357810 - MLT1L LTR MaLR -6 609 550 449 275 52 67 chr6 98057440 98057633 -84357609 - MLT1L LTR MaLR -425 190 1 242 333 24 0 chr6 98058518 98058602 -84356640 - MIR SINE MIR -17 245 160 790 197 22 28 chr6 98058603 98058781 -84356461 - MLT1C LTR MaLR 0 467 291 1199 134 0 0 chr6 98058788 98058960 -84356282 - AluSg/x SINE Alu -1 311 140 2424 70 7 0 chr6 98059075 98059373 -84355869 - AluY SINE Alu -5 306 7 664 241 65 74 chr6 98059377 98059701 -84355541 - L1MC5 LINE L1 -807 7154 6834 1443 183 50 21 chr6 98059800 98059940 -84355302 + AluJo SINE Alu 1 136 -176 2072 128 0 34 chr6 98059940 98060260 -84354982 + AluSx SINE Alu 1 309 -3 766 197 105 0 chr6 98060246 98060398 -84354844 + AluJo SINE Alu 120 287 -25 1443 183 50 21 chr6 98060260 98060398 -84354844 + AluJo SINE Alu 136 287 -25 500 226 20 0 chr6 98060414 98060516 -84354726 - U13 snRNA snRNA 0 104 1 309 217 40 79 chr6 98060525 98060580 -84354662 - L1MC5 LINE L1 -34 7927 7871 2266 106 0 25 chr6 98060580 98060900 -84354342 + AluSx SINE Alu 1 312 0 309 217 40 79 chr6 98060900 98060996 -84354246 - L1MC5 LINE L1 -90 7871 7782 1940 112 0 65 chr6 98061004 98061191 -84354051 - AluSg SINE Alu -10 300 141 2321 85 0 0 chr6 98061191 98061496 -84353746 - AluSx SINE Alu -7 305 1 1940 112 0 65 chr6 98061496 98061629 -84353613 - AluSg SINE Alu -169 141 1 416 233 0 78 chr6 98061856 98061985 -84353257 - HAL1 LINE L1 -715 1792 1674 2249 91 10 0 chr6 98062003 98062311 -84352931 - AluSq SINE Alu -2 311 1 2152 92 0 0 chr6 98062333 98062615 -84352627 - AluSp SINE Alu -31 282 1 668 92 229 0 chr6 98062615 98062724 -84352518 - AluSg SINE Alu -175 135 2 266 185 15 15 chr6 98062863 98062928 -84352314 - L1ME LINE L1 -440 5681 5617 1039 145 100 15 chr6 98062932 98063132 -84352110 + MER50 LTR ERV1 13 229 -505 * 1391 174 15 26 chr6 98063126 98063390 -84351852 + MER50 LTR ERV1 433 693 -41 2039 80 10 17 chr6 98063437 98063737 -84351505 - AluSx SINE Alu -14 298 1 232 376 62 25 chr6 98064707 98064869 -84350373 - L2 LINE L2 -10 3262 3095 2282 50 3 0 chr6 98064989 98065271 -84349971 - AluSc SINE Alu -15 294 12 727 178 0 0 chr6 98065331 98065460 -84349782 - FLAM_C SINE Alu -4 129 1 2198 103 0 10 chr6 98065464 98065776 -84349466 - AluSx SINE Alu -3 309 1 714 222 82 31 chr6 98065824 98066018 -84349224 + MER20 DNA MER1_type 16 219 0 198 343 80 36 chr6 98066169 98066306 -84348936 + L2 LINE L2 2914 3056 -216 251 299 60 0 chr6 98066390 98066457 -84348785 + L2 LINE L2 3201 3271 -1 2550 129 7 55 chr6 98066489 98066838 -84348404 - MER4E LTR ERV1 0 779 453 2259 97 0 0 chr6 98066838 98067138 -84348104 + AluY SINE Alu 1 300 -11 2550 129 7 55 chr6 98067138 98067221 -84348021 - MER4E LTR ERV1 -326 453 368 651 159 19 0 chr6 98067321 98067428 -84347814 - FLAM_C SINE Alu -21 122 14 2085 99 0 0 chr6 98067485 98067767 -84347475 - AluSx SINE Alu -30 282 1 1698 127 79 70 chr6 98069308 98069360 -84345882 - MER4D LTR ERV1 -543 360 310 804 152 0 36 chr6 98069360 98069498 -84345744 + FLAM_C SINE Alu 1 133 0 1698 127 79 70 chr6 98069498 98069800 -84345442 - MER4D LTR ERV1 -593 310 3 907 166 9 113 chr6 98069840 98070069 -84345173 - AluJo SINE Alu -89 223 19 1319 160 16 98 chr6 98070158 98070306 -84344936 - AluJo SINE Alu -30 282 124 2146 110 3 3 chr6 98070306 98070616 -84344626 - AluSx SINE Alu -2 310 1 1319 160 16 98 chr6 98070616 98070647 -84344595 - AluJo SINE Alu -188 124 92 2239 71 14 0 chr6 98070647 98070941 -84344301 + AluSp SINE Alu 1 298 -15 1319 160 16 98 chr6 98070941 98071067 -84344175 - AluJo SINE Alu -220 92 1 472 178 0 0 chr6 98071507 98071580 -84343662 - AluS SINE Alu -238 74 2 2168 95 3 0 chr6 98071600 98071894 -84343348 + AluSg SINE Alu 1 295 -15 2076 107 0 29 chr6 98072140 98072449 -84342793 + AluSc SINE Alu 1 300 -9 1834 123 3 18 chr6 98072583 98072867 -84342375 - AluSg SINE Alu -30 280 1 293 263 42 17 chr6 98072871 98072989 -84342253 - L1MEc LINE L1 -2451 3764 3644 3473 293 73 23 chr6 98072994 98074222 -84341020 - ERVL LTR ERVL -1189 4575 3168 1769 138 144 6 chr6 98074222 98074542 -84340700 - THE1B LTR MaLR 0 364 1 3473 293 73 23 chr6 98074542 98075123 -84340119 - ERVL LTR ERVL -2596 3168 2617 197 116 0 23 chr6 98075232 98075275 -84339967 + (TA)n Simple_repeat Simple_repeat 2 43 0 2004 106 14 7 chr6 98075366 98075659 -84339583 - AluSq SINE Alu -18 295 1 2021 92 7 7 chr6 98075703 98075996 -84339246 - AluY SINE Alu -17 294 2 2359 60 0 3 chr6 98075997 98076295 -84338947 - AluY SINE Alu -14 297 1 558 266 59 97 chr6 98076312 98076550 -84338692 - ERVL LTR ERVL -3064 2590 2367 1516 162 0 26 chr6 98076550 98076821 -84338421 - AluSx SINE Alu -18 294 31 558 266 59 97 chr6 98076821 98076921 -84338321 - ERVL LTR ERVL -3287 2367 2265 416 284 73 64 chr6 98076921 98077139 -84338103 - L1MEc LINE L1 -4154 2242 2023 259 211 306 48 chr6 98077548 98077695 -84337547 + MIR3 SINE MIR 9 193 -15 753 162 0 0 chr6 98077765 98077876 -84337366 + FLAM_A SINE Alu 10 120 -22 228 35 0 0 chr6 98077876 98077905 -84337337 + (CTA)n Simple_repeat Simple_repeat 1 29 0 2185 88 0 10 chr6 98077994 98078291 -84336951 + AluSx SINE Alu 1 294 -18 405 0 0 0 chr6 98078292 98078337 -84336905 + (CA)n Simple_repeat Simple_repeat 2 46 0 1302 160 0 5 chr6 98079449 98079668 -84335574 + AluSx SINE Alu 64 281 -31 423 0 0 0 chr6 98079668 98079715 -84335527 + (CA)n Simple_repeat Simple_repeat 2 48 0 306 212 30 0 chr6 98080428 98080527 -84334715 + GA-rich Low_complexity Low_complexity 3 104 0 1615 162 14 14 chr6 98080527 98080823 -84334419 - AluJb SINE Alu -9 303 8 1686 181 7 7 chr6 98080847 98081157 -84334085 - AluJo SINE Alu -2 310 1 26 0 0 0 chr6 98082513 98082539 -84332703 + AT_rich Low_complexity Low_complexity 1 26 0 199 125 62 0 chr6 98082754 98082802 -84332440 + (CATATA)n Simple_repeat Simple_repeat 1 51 0 372 203 0 13 chr6 98082841 98082920 -84332322 - L1M4 LINE L1 -1559 4587 4510 23 0 0 0 chr6 98082923 98082946 -84332296 + AT_rich Low_complexity Low_complexity 1 23 0 291 28 0 0 chr6 98082949 98082985 -84332257 + (TG)n Simple_repeat Simple_repeat 2 37 0 227 333 165 20 chr6 98082985 98083112 -84332130 + L2 LINE L2 1967 2074 -1240 6348 102 35 9 chr6 98083112 98084057 -84331185 + LTR5 LTR ERVK 1 969 0 227 333 165 20 chr6 98084057 98084232 -84331010 + L2 LINE L2 2074 2313 -1001 1795 152 0 19 chr6 98084263 98084578 -84330664 - AluJo SINE Alu -3 309 1 381 309 16 8 chr6 98084622 98084745 -84330497 - L1M4 LINE L1 -1051 5095 4972 235 264 40 136 chr6 98084867 98084951 -84330291 + L2 LINE L2 3160 3231 -41 1984 124 0 0 chr6 98084951 98085261 -84329981 - AluSg SINE Alu 0 310 1 235 264 40 136 chr6 98085261 98085300 -84329942 + L2 LINE L2 3231 3272 0 2119 110 3 0 chr6 98085328 98085620 -84329622 - AluSx SINE Alu -19 293 1 258 358 73 56 chr6 98088379 98088829 -84326413 - L2 LINE L2 0 3272 2815 798 222 18 0 chr6 98089545 98089716 -84325526 + MER5B DNA MER1_type 5 178 0 1743 140 42 39 chr6 98089732 98090039 -84325203 + AluJb SINE Alu 1 308 -4 240 243 14 14 chr6 98090217 98090287 -84324955 - L1MCa LINE L1 -3239 2976 2907 1313 180 0 4 chr6 98090348 98090581 -84324661 - AluJo SINE Alu -80 232 1 696 249 32 32 chr6 98090585 98090770 -84324472 - L1MCa LINE L1 -3318 2897 2713 2324 78 0 3 chr6 98090772 98091081 -84324161 - AluY SINE Alu -3 308 1 424 235 0 0 chr6 98091095 98091180 -84324062 - AluJo SINE Alu -167 135 51 2199 239 40 57 chr6 98091182 98091587 -84323655 - L1MCa LINE L1 -3492 2723 2312 2326 48 41 0 chr6 98091587 98091881 -84323361 - AluY SINE Alu -5 306 1 2199 239 40 57 chr6 98091881 98091920 -84323322 - L1MCa LINE L1 -3903 2312 2274 1446 164 3 69 chr6 98091920 98092087 -84323155 - AluJb SINE Alu -11 301 163 2239 74 20 0 chr6 98092087 98092384 -84322858 - AluSq SINE Alu -2 311 9 1446 164 3 69 chr6 98092384 98092534 -84322708 - AluJb SINE Alu -149 163 5 2199 239 40 57 chr6 98092534 98092748 -84322494 - L1MCa LINE L1 -3941 2274 2058 2127 109 3 19 chr6 98092748 98093059 -84322183 - AluSx SINE Alu -5 307 2 2199 239 40 57 chr6 98093059 98093073 -84322169 - L1MCa LINE L1 -4157 2058 2045 2106 100 0 19 chr6 98093073 98093383 -84321859 - AluSg SINE Alu -6 304 1 2199 239 40 57 chr6 98093383 98093847 -84321395 - L1MCa LINE L1 -4170 2045 1648 1765 168 20 0 chr6 98093847 98094145 -84321097 - AluSx SINE Alu -6 306 3 2199 239 40 57 chr6 98094145 98094253 -84320989 - L1MCa LINE L1 -4567 1648 1540 1320 76 6 0 chr6 98094354 98094526 -84320716 + AluSc SINE Alu 121 293 -16 1816 129 6 66 chr6 98094894 98095089 -84320153 - AluSx SINE Alu 0 312 144 1924 106 23 43 chr6 98095089 98095392 -84319850 - AluSp SINE Alu -16 297 1 1816 129 6 66 chr6 98095392 98095528 -84319714 - AluSx SINE Alu -168 144 1 1701 169 0 28 chr6 98095555 98095875 -84319367 + AluJo SINE Alu 1 311 -1 296 204 41 71 chr6 98096171 98096269 -84318973 - MIR SINE MIR -64 198 104 1860 108 7 55 chr6 98096457 98096764 -84318478 + AluSx SINE Alu 3 294 -18 1559 179 23 10 chr6 98097290 98097592 -84317650 - AluJo SINE Alu -4 308 3 1581 106 22 55 chr6 98098403 98098678 -84316564 - AluSx SINE Alu -11 301 36 2277 80 0 7 chr6 98098807 98099107 -84316135 + AluSc SINE Alu 1 298 -11 820 158 0 0 chr6 98099605 98099738 -84315504 + AluJo/FLAM SINE Alu 1 133 -179 1831 139 0 7 chr6 98099739 98100026 -84315216 + AluSx SINE Alu 1 285 -27 1218 180 155 0 chr6 98100170 98100415 -84314827 + AluJo SINE Alu 1 283 -19 1082 285 114 29 chr6 98100435 98101021 -84314221 + L1ME LINE L1 137 772 -5433 1753 153 0 17 chr6 98101030 98101325 -84313917 + AluJb SINE Alu 1 290 -22 635 231 160 13 chr6 98101352 98101610 -84313632 + L1ME LINE L1 943 1221 -4984 376 280 76 101 chr6 98101629 98101767 -84313475 + L1ME LINE L1 1766 1906 -4309 2032 99 3 40 chr6 98101767 98102091 -84313151 - AluSx SINE Alu 0 312 1 376 280 76 101 chr6 98102091 98102491 -84312751 + L1ME LINE L1 1906 2256 -3959 687 231 15 15 chr6 98102504 98102699 -84312543 + L1MC4 LINE L1 7726 7920 -122 252 0 0 0 chr6 98102700 98102728 -84312514 + (TG)n Simple_repeat Simple_repeat 2 29 0 2164 106 0 0 chr6 98102746 98103039 -84312203 + AluSx SINE Alu 1 293 -19 2242 74 0 0 chr6 98103141 98103468 -84311774 + AluY SINE Alu 1 327 0 2191 87 7 7 chr6 98103476 98103776 -84311466 + AluSq SINE Alu 1 300 -13 210 37 0 0 chr6 98103779 98103806 -84311436 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1981 120 0 3 chr6 98104342 98104633 -84310609 - AluSg SINE Alu -20 290 1 328 289 20 94 chr6 98105353 98105502 -84309740 + L2 LINE L2 3134 3271 -1 2284 79 7 7 chr6 98105632 98105935 -84309307 + AluSg SINE Alu 1 303 -7 2195 107 0 3 chr6 98105935 98106244 -84308998 + AluSx SINE Alu 1 308 -4 1829 106 0 4 chr6 98106565 98106819 -84308423 + AluSx SINE Alu 39 291 -21 2352 64 3 0 chr6 98106824 98107121 -84308121 + AluY SINE Alu 1 298 -13 1746 148 47 3 chr6 98107270 98107568 -84307674 + AluJb SINE Alu 1 311 -1 800 247 44 22 chr6 98107751 98107978 -84307264 - MIR SINE MIR 0 262 31 195 244 0 0 chr6 98108315 98108356 -84306886 - L2 LINE L2 -27 3286 3246 1643 154 0 50 chr6 98109577 98109749 -84305493 - AluJo SINE Alu -9 303 153 2091 115 0 3 chr6 98109749 98110053 -84305189 - AluSq SINE Alu -10 303 1 1643 154 0 50 chr6 98110053 98110199 -84305043 - AluJo SINE Alu -159 153 1 2151 92 26 3 chr6 98110234 98110540 -84304702 - AluSq SINE Alu 0 313 1 1469 165 0 55 chr6 98110540 98110848 -84304394 - AluJo SINE Alu -9 303 12 180 0 0 0 chr6 98110895 98110915 -84304327 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2216 91 0 7 chr6 98110915 98111215 -84304027 - AluSq SINE Alu -13 300 1 310 93 0 56 chr6 98111224 98111278 -84303964 - L1MB8 LINE L1 0 6178 6128 764 233 0 0 chr6 98111304 98111450 -84303792 - FRAM SINE Alu -30 146 1 303 229 67 19 chr6 98111521 98111626 -84303616 + L1MC4a LINE L1 6097 6206 -1602 1247 108 11 0 chr6 98111721 98111907 -84303335 + LTR64 LTR ERVK 1 188 -370 2386 51 41 3 chr6 98111909 98112201 -84303041 + AluY SINE Alu 1 303 -8 854 159 0 0 chr6 98112261 98112387 -84302855 - FLAM_C SINE Alu -17 126 1 614 227 110 36 chr6 98112456 98112791 -84302451 - L1MC5 LINE L1 -30 7931 7572 2138 128 3 6 chr6 98113026 98113338 -84301904 - AluSq SINE Alu -2 311 1 733 194 32 7 chr6 98113358 98113513 -84301729 - FRAM SINE Alu -4 162 4 2457 82 0 0 chr6 98114928 98115233 -84300009 - AluSg SINE Alu -5 305 1 262 290 19 84 chr6 98115615 98115722 -84299520 + L2 LINE L2 2953 3052 -220 213 254 0 34 chr6 98116495 98116554 -84298688 + MIR SINE MIR 38 94 -168 803 196 0 0 chr6 98116984 98117117 -84298125 - FLAM_A SINE Alu 0 133 1 2332 90 7 0 chr6 98117129 98117430 -84297812 - AluSg SINE Alu -7 303 1 1588 177 7 52 chr6 98117456 98117766 -84297476 - AluJo SINE Alu -15 297 2 1894 134 30 13 chr6 98117790 98118089 -84297153 - AluSx SINE Alu -5 307 4 669 167 83 0 chr6 98118094 98118214 -84297028 - FLAM_C SINE Alu -2 131 2 298 221 15 52 chr6 98119249 98119385 -84295857 - L1MC5 LINE L1 -233 7728 7598 197 32 0 32 chr6 98119733 98119764 -84295478 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1951 122 4 11 chr6 98119767 98120045 -84295197 - AluSq SINE Alu -37 276 1 868 156 0 0 chr6 98120071 98120212 -84295030 - AluSg/x SINE Alu -6 304 164 677 81 0 0 chr6 98120222 98120308 -84294934 - MER11A LTR ERVK 0 1266 1181 2183 119 10 0 chr6 98120414 98120708 -84294534 - AluSg SINE Alu -13 297 1 1673 195 3 3 chr6 98121015 98121317 -84293925 + AluJo SINE Alu 1 302 -10 1788 134 0 101 chr6 98121554 98121882 -84293360 - AluSx SINE Alu -17 295 1 2046 147 3 0 chr6 98121990 98122296 -84292946 + AluJb SINE Alu 1 307 -5 907 153 0 0 chr6 98122360 98122497 -84292745 - AluSp/q SINE Alu -20 293 157 2305 74 16 32 chr6 98122668 98122980 -84292262 + AluSg SINE Alu 1 307 -3 184 57 29 29 chr6 98123284 98123319 -84291923 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 2356 98 0 6 chr6 98123518 98123833 -84291409 - AluSq SINE Alu 0 313 1 374 147 93 0 chr6 98124543 98124618 -84290624 - MER2 DNA MER2_type -174 171 90 2246 91 0 7 chr6 98124678 98125014 -84290228 - AluY SINE Alu 0 334 1 605 188 0 0 chr6 98125017 98125113 -84290129 - MER2 DNA MER2_type -249 96 1 25 0 0 0 chr6 98125263 98125288 -84289954 + AT_rich Low_complexity Low_complexity 1 25 0 826 133 74 0 chr6 98125518 98125653 -84289589 - LTR8 LTR ERV1 0 691 547 2037 164 70 80 chr6 98125654 98126180 -84289062 - LTR8A LTR ERV1 -64 663 143 1252 94 6 0 chr6 98126286 98126446 -84288796 + AluSp SINE Alu 107 267 -46 1157 75 6 0 chr6 98126452 98126613 -84288629 + (TTTCC)n Simple_repeat Simple_repeat 5 166 0 344 58 0 19 chr6 98126614 98126666 -84288576 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 805 87 0 0 chr6 98126666 98126770 -84288472 - HY1 scRNA scRNA -8 104 1 2483 68 0 3 chr6 98126904 98127212 -84288030 - AluY SINE Alu -4 307 1 2376 93 10 0 chr6 98127394 98127695 -84287547 - AluSc SINE Alu -5 304 1 5282 140 29 6 chr6 98128023 98128890 -84286352 - L1MC1 LINE L1 -11 6322 5436 621 85 0 0 chr6 98128890 98128972 -84286270 - AluS SINE Alu -231 82 1 536 118 32 0 chr6 98128976 98129069 -84286173 - L1MC1 LINE L1 -908 5436 5341 340 97 32 0 chr6 98129105 98129167 -84286075 + (TA)n Simple_repeat Simple_repeat 1 64 0 2100 102 28 3 chr6 98129168 98129452 -84285790 - AluSx SINE Alu -21 291 1 548 263 47 90 chr6 98129452 98129599 -84285643 - L1M4 LINE L1 -1764 4382 4230 2347 99 0 3 chr6 98129599 98129903 -84285339 - AluSx SINE Alu -4 308 6 548 263 47 90 chr6 98129903 98130004 -84285238 - L1M4 LINE L1 -1916 4230 4147 180 111 0 0 chr6 98130004 98130031 -84285211 + (TCTTG)n Simple_repeat Simple_repeat 2 28 0 548 263 47 90 chr6 98130031 98130081 -84285161 - L1M4 LINE L1 -1999 4147 4096 228 182 58 91 chr6 98130084 98130205 -84285037 - Tigger7 DNA MER2_type -218 515 399 883 166 10 55 chr6 98130205 98130335 -84284907 - L1M4 LINE L1 -2178 3968 3849 2203 128 0 0 chr6 98130335 98130633 -84284609 - AluSx SINE Alu -14 298 1 883 166 10 55 chr6 98130633 98130701 -84284541 - L1M4 LINE L1 -2297 3849 3779 2236 70 3 14 chr6 98130701 98131020 -84284222 - AluY SINE Alu 0 316 1 1832 177 0 3 chr6 98131021 98131320 -84283922 - AluJb SINE Alu -13 299 2 299 154 0 0 chr6 98131420 98131472 -84283770 + Alu SINE Alu 251 302 0 491 134 24 0 chr6 98131481 98131563 -84283679 - L1MCa LINE L1 -5654 772 689 828 201 29 23 chr6 98131573 98131747 -84283495 - L1MCa LINE L1 -6248 178 4 865 158 0 0 chr6 98131984 98132117 -84283125 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr6 98132730 98132751 -84282491 + (TAA)n Simple_repeat Simple_repeat 2 22 0 479 172 60 0 chr6 98132991 98133125 -84282117 + CT-rich Low_complexity Low_complexity 3 144 0 2439 53 0 13 chr6 98133145 98133446 -84281796 - AluY SINE Alu -14 297 1 236 111 0 0 chr6 98133449 98133485 -84281757 - MER5B DNA MER1_type -137 41 6 893 194 0 0 chr6 98133825 98133980 -84281262 - FRAM SINE Alu -9 167 13 472 268 234 10 chr6 98133989 98134574 -84280668 - L2 LINE L2 -15 3298 2578 203 179 0 0 chr6 98134655 98134694 -84280548 + A-rich Low_complexity Low_complexity 3 41 0 2099 119 30 0 chr6 98134873 98135175 -84280067 - AluSx SINE Alu -1 311 1 23 0 0 0 chr6 98135177 98135200 -84280042 + AT_rich Low_complexity Low_complexity 1 23 0 5603 111 52 6 chr6 98135200 98136060 -84279182 - L1MA4A LINE L1 -5 6298 5399 1234 233 40 0 chr6 98136062 98136337 -84278905 - AluJo SINE Alu -4 308 23 15548 160 57 17 chr6 98136354 98137713 -84277529 - L1 LINE L1 -3001 3847 2544 1800 181 0 6 chr6 98137713 98138027 -84277215 - AluJb SINE Alu 0 312 1 15548 160 57 17 chr6 98138027 98140365 -84274877 - L1 LINE L1 -4304 2544 3 318 267 148 5 chr6 98140400 98140610 -84274632 - L1MC4a LINE L1 -1897 5911 5672 2108 132 0 0 chr6 98140688 98140975 -84274267 - AluSx SINE Alu -25 287 1 903 205 0 6 chr6 98140983 98141149 -84274093 - FRAM SINE Alu -17 159 1 379 323 145 0 chr6 98141151 98141433 -84273809 - L1MC4a LINE L1 -2213 5595 5273 851 142 54 14 chr6 98141633 98141781 -84273461 - FRAM SINE Alu -22 154 1 200 224 104 30 chr6 98141990 98142021 -84273221 - MIR SINE MIR -65 143 116 2415 75 0 0 chr6 98142021 98142316 -84272926 + AluSc SINE Alu 1 295 -14 200 224 104 30 chr6 98142316 98142351 -84272891 - MIR SINE MIR -92 116 72 184 260 0 0 chr6 98142354 98142404 -84272838 + L2 LINE L2 3217 3266 -6 1606 93 42 13 chr6 98143776 98144012 -84271230 - AluSq SINE Alu -70 243 1 1568 177 3 47 chr6 98144485 98144807 -84270435 - AluJb SINE Alu -4 308 1 198 350 136 0 chr6 98145055 98145158 -84270084 + L2 LINE L2 3109 3225 -47 2064 119 20 0 chr6 98145399 98145693 -84269549 + AluSc SINE Alu 1 300 -9 950 182 18 0 chr6 98145702 98145872 -84269370 + FAM SINE Alu 1 173 -2 2063 131 6 29 chr6 98146581 98146924 -84268318 - MER1B DNA MER1_type -2 335 1 1548 184 88 0 chr6 98147560 98147880 -84267362 + MER7A DNA MER2_type 1 346 0 604 163 141 22 chr6 98147975 98148110 -84267132 - L1MD2 LINE L1 -2 6357 6207 198 0 0 0 chr6 98149925 98149947 -84265295 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 234 0 0 0 chr6 98151588 98151614 -84263628 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 294 39 58 0 chr6 98151932 98151984 -84263258 + (TA)n Simple_repeat Simple_repeat 2 56 0 2418 132 40 2 chr6 98153303 98153698 -84261544 + L1MC1 LINE L1 5914 6323 -10 1800 148 6 46 chr6 98153699 98154023 -84261219 + AluJb SINE Alu 1 311 -1 2225 117 7 3 chr6 98154373 98154672 -84260570 + AluSx SINE Alu 1 300 -12 24 77 0 0 chr6 98154970 98155022 -84260220 + AT_rich Low_complexity Low_complexity 1 52 0 341 247 108 131 chr6 98156062 98156317 -84258925 - L2 LINE L2 -11 3261 3015 818 150 0 0 chr6 98156317 98156437 -84258805 - FLAM_C SINE Alu -13 120 1 341 247 108 131 chr6 98156437 98156525 -84258717 - L2 LINE L2 -257 3015 2926 186 43 0 0 chr6 98156708 98156731 -84258511 + (CAA)n Simple_repeat Simple_repeat 2 24 0 572 253 122 5 chr6 98157307 98157528 -84257714 + MIR SINE MIR 13 259 -3 2076 140 0 3 chr6 98157534 98157826 -84257416 - AluSx SINE Alu -21 291 1 207 69 0 0 chr6 98157950 98157979 -84257263 + (CA)n Simple_repeat Simple_repeat 2 30 0 368 283 80 0 chr6 98158864 98158977 -84256265 + MIR SINE MIR 25 146 -62 1650 214 74 53 chr6 98159039 98159497 -84255745 + MLT1F LTR MaLR 60 533 -9 1457 130 38 148 chr6 98159658 98159997 -84255245 - AluJb SINE Alu 0 302 1 2092 136 3 0 chr6 98160004 98160305 -84254937 - AluSx SINE Alu -10 302 1 1422 194 38 13 chr6 98160667 98160981 -84254261 - MER33 DNA MER1_type 0 324 3 861 139 0 0 chr6 98162977 98163106 -84252136 - FLAM_C SINE Alu -3 130 2 34 79 0 0 chr6 98163396 98163472 -84251770 + AT_rich Low_complexity Low_complexity 1 76 0 197 255 31 93 chr6 98164106 98164260 -84250982 + MIR SINE MIR 43 186 -76 186 133 0 0 chr6 98164662 98164692 -84250550 + (TC)n Simple_repeat Simple_repeat 1 30 0 3560 172 19 61 chr6 98164947 98165716 -84249526 + L1MB7 LINE L1 5429 6165 -19 649 288 153 38 chr6 98166115 98166587 -84248655 + L1MC/D LINE L1 5255 5780 -2028 2500 55 0 19 chr6 98167556 98167866 -84247376 - AluY SINE Alu -7 304 1 1998 138 0 3 chr6 98168206 98168503 -84246739 - AluJb SINE Alu -16 296 1 195 377 41 25 chr6 98173561 98173683 -84241559 + L2 LINE L2 3136 3259 -13 1455 51 22 0 chr6 98174298 98174476 -84240766 - L1PA3 LINE L1 0 6155 5974 392 291 50 14 chr6 98175078 98175219 -84240023 - MIR SINE MIR -81 181 36 862 153 0 0 chr6 98177394 98177525 -84237717 - FLAM_C SINE Alu -2 131 1 23 0 0 0 chr6 98177528 98177551 -84237691 + AT_rich Low_complexity Low_complexity 1 23 0 1588 204 4 11 chr6 98177553 98177833 -84237409 - AluJb SINE Alu -32 280 3 915 132 0 0 chr6 98178143 98178272 -84236970 - FLAM_C SINE Alu 0 133 5 471 210 7 116 chr6 98178351 98178489 -84236753 + MIR SINE MIR 47 169 -93 189 298 71 90 chr6 98178537 98178792 -84236450 - L2 LINE L2 -60 3212 2963 * 203 323 71 0 chr6 98178789 98178888 -84236354 + L2 LINE L2 2986 3091 -222 910 184 46 23 chr6 98178894 98179068 -84236174 - MER45A DNA AcHobo 0 178 1 450 0 0 0 chr6 98179093 98179143 -84236099 + (CA)n Simple_repeat Simple_repeat 1 50 0 296 313 15 15 chr6 98179251 98179382 -84235860 + ERVL LTR ERVL 1664 1794 -3970 244 262 120 62 chr6 98179741 98179966 -84235276 + LTR50 LTR ERVL 1 238 -557 639 219 26 31 chr6 98180064 98180256 -84234986 + LTR33A LTR ERVL 316 506 -17 346 256 101 8 chr6 98180264 98180393 -84234849 - MIR3 SINE MIR -65 143 3 3948 174 18 41 chr6 98182742 98183279 -84231963 + L1MB2 LINE L1 5019 5567 -588 1783 188 13 0 chr6 98183279 98183587 -84231655 - AluJb SINE Alu 0 312 1 3948 174 18 41 chr6 98183587 98184215 -84231027 + L1MB2 LINE L1 5567 6155 0 1098 131 45 90 chr6 98184222 98184467 -84230775 + L1MB2 LINE L1 5936 6169 -2 2142 122 3 7 chr6 98184886 98185182 -84230060 - AluSx SINE Alu -17 295 1 334 244 67 0 chr6 98185593 98185683 -84229559 - L3 LINE CR1 -247 1330 1235 665 161 0 9 chr6 98186864 98186976 -84228266 - FLAM_C SINE Alu -12 131 21 2156 142 0 0 chr6 98188724 98189026 -84226216 + AluSx SINE Alu 1 302 -10 2407 79 3 7 chr6 98189046 98189349 -84225893 - AluSp SINE Alu -10 303 2 300 301 74 81 chr6 98191364 98191560 -84223682 - L2 LINE L2 -2 3270 3074 2355 108 16 38 chr6 98191560 98191932 -84223310 - THE1B LTR MaLR 0 364 1 300 301 74 81 chr6 98191932 98192154 -84223088 - L2 LINE L2 -198 3074 2855 2236 101 10 7 chr6 98192804 98193112 -84222130 + AluSq SINE Alu 1 309 -4 734 173 15 15 chr6 98193116 98193249 -84221993 + FLAM_A SINE Alu 1 133 0 910 168 119 5 chr6 98193508 98193693 -84221549 - MLT1D LTR MaLR -299 206 1 808 247 87 4 chr6 98194160 98194391 -84220851 + MIR SINE MIR 8 257 -5 198 147 29 0 chr6 98195524 98195558 -84219684 + MIR SINE MIR 222 256 -6 219 88 0 0 chr6 98198629 98198663 -84216579 + (A)n Simple_repeat Simple_repeat 1 34 0 190 305 104 73 chr6 98199292 98199456 -84215786 - L2 LINE L2 -1 3271 3103 2448 74 3 7 chr6 98200006 98200304 -84214938 + AluSx SINE Alu 1 297 -15 2290 72 0 39 chr6 98201129 98201436 -84213806 - AluY SINE Alu -16 295 1 978 196 0 0 chr6 98201965 98202133 -84213109 - AluJb SINE Alu -11 301 134 309 287 57 51 chr6 98202685 98202883 -84212359 - MIR SINE MIR -63 145 2 230 192 19 0 chr6 98203238 98203290 -84211952 - L2 LINE L2 0 3313 3261 480 129 439 0 chr6 98203329 98203382 -84211860 - MER3 DNA MER1_type 0 209 180 2349 101 3 0 chr6 98203382 98203690 -84211552 + AluSq SINE Alu 1 309 -4 480 129 439 0 chr6 98203690 98203768 -84211474 - MER3 DNA MER1_type -29 180 20 1093 311 204 27 chr6 98206774 98207788 -84207454 + L3 LINE CR1 336 1529 -48 1291 194 12 10 chr6 98209153 98209451 -84205791 - L1MB2 LINE L1 -34 6134 5846 477 328 115 13 chr6 98210609 98210923 -84204319 + L2 LINE L2 2967 3312 -1 697 297 84 7 chr6 98210925 98211221 -84204021 + L2 LINE L2 2994 3312 -1 1223 254 56 21 chr6 98211489 98211867 -84203375 - L1MC4 LINE L1 -130 7912 7522 393 219 66 147 chr6 98211926 98212354 -84202888 - L1MC4a LINE L1 -1558 6250 5868 2204 108 3 34 chr6 98212354 98212677 -84202565 + AluSp SINE Alu 1 313 0 393 219 66 147 chr6 98212677 98212760 -84202482 - L1MC4a LINE L1 -1940 5868 5780 1833 174 40 26 chr6 98212867 98213218 -84202024 + MLT1B LTR MaLR 33 388 -2 394 266 102 49 chr6 98214769 98214995 -84200247 - L1ME4a LINE L1 -4 6117 5880 235 265 115 70 chr6 98215028 98215228 -84200014 - L1MC4 LINE L1 -312 7730 7522 243 125 0 0 chr6 98216987 98217027 -84198215 + (CA)n Simple_repeat Simple_repeat 1 40 0 285 333 111 7 chr6 98217040 98217193 -84198049 - L3b LINE CR1 -139 1444 1276 232 191 21 0 chr6 98221041 98221088 -84194154 - MIR3 SINE MIR -34 174 127 375 219 124 0 chr6 98221107 98221212 -84194030 + L2 LINE L2 1549 1666 -1648 683 142 13 184 chr6 98221268 98221501 -84193741 - 7SK RNA RNA 0 193 1 420 174 52 26 chr6 98221509 98221624 -84193618 - MLT1J2 LTR MaLR -42 408 291 3455 252 153 20 chr6 98221832 98222484 -84192758 + L2 LINE L2 1652 2216 -1097 2241 114 3 7 chr6 98222484 98222792 -84192450 + AluSx SINE Alu 1 307 -5 3455 252 153 20 chr6 98222792 98223616 -84191626 + L2 LINE L2 2216 3313 0 194 280 0 0 chr6 98223623 98223673 -84191569 - MIR SINE MIR -76 132 83 281 242 108 33 chr6 98224064 98224184 -84191058 - L3b LINE CR1 -87 1496 1368 437 187 0 0 chr6 98226157 98226232 -84189010 + FLAM SINE Alu 48 122 -21 1801 178 0 7 chr6 98226610 98226913 -84188329 - AluJo SINE Alu -11 301 1 26 0 0 0 chr6 98227054 98227080 -84188162 + AT_rich Low_complexity Low_complexity 1 26 0 1926 104 0 4 chr6 98227080 98227331 -84187911 - AluSg SINE Alu -22 288 39 816 146 0 0 chr6 98227338 98227461 -84187781 - FLAM_A SINE Alu -10 123 1 309 232 13 20 chr6 98227487 98227601 -84187641 + Charlie8 DNA MER1_type 232 2417 0 320 333 49 10 chr6 98227694 98227796 -84187446 + MER91C DNA MER1_type 33 138 -2 300 27 0 0 chr6 98228854 98228891 -84186351 + (GAAA)n Simple_repeat Simple_repeat 1 37 0 2253 113 0 3 chr6 98229658 98229960 -84185282 - AluSq SINE Alu -12 301 1 522 187 122 0 chr6 98230085 98230103 -84185139 - L1MA10 LINE L1 0 6334 6317 5051 214 86 91 chr6 98230103 98231526 -84183716 - L1ME1 LINE L1 -23 6212 4783 180 0 0 0 chr6 98231526 98231546 -84183696 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5051 214 86 91 chr6 98231546 98231595 -84183647 - L1ME1 LINE L1 -1452 4783 4735 988 190 0 28 chr6 98231595 98231657 -84183585 - AluJo SINE Alu -138 174 112 2091 100 4 0 chr6 98231657 98231926 -84183316 + AluSg SINE Alu 22 291 -19 396 40 0 0 chr6 98231928 98231978 -84183264 + (TG)n Simple_repeat Simple_repeat 1 50 0 988 190 0 28 chr6 98231978 98232091 -84183151 - AluJo SINE Alu -201 111 1 5051 214 86 91 chr6 98232091 98232343 -84182899 - L1ME1 LINE L1 -1500 4735 4483 2135 127 3 0 chr6 98232343 98232643 -84182599 + AluSx SINE Alu 1 301 -11 5051 214 86 91 chr6 98232643 98232673 -84182569 - L1ME1 LINE L1 -1752 4483 4454 1781 127 54 7 chr6 98232673 98232949 -84182293 - AluSg SINE Alu -21 289 1 5051 214 86 91 chr6 98232949 98233490 -84181752 - L1ME1 LINE L1 -1781 4454 3912 2486 77 0 6 chr6 98233490 98233803 -84181439 - AluY SINE Alu 0 311 1 5051 214 86 91 chr6 98233803 98233831 -84181411 - L1ME1 LINE L1 -2323 3912 3885 1536 153 12 20 chr6 98233831 98234079 -84181163 - AluJo SINE Alu -66 246 1 5051 214 86 91 chr6 98234079 98234416 -84180826 - L1ME1 LINE L1 -2350 3885 3548 189 0 0 0 chr6 98234416 98234437 -84180805 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 261 0 0 0 chr6 98234436 98234465 -84180777 + (TA)n Simple_repeat Simple_repeat 1 29 0 5051 214 86 91 chr6 98234437 98234465 -84180777 - L1ME1 LINE L1 -2687 3548 3521 2253 102 3 7 chr6 98234465 98234768 -84180474 - AluSc SINE Alu -7 302 1 1724 165 3 23 chr6 98234768 98235077 -84180165 - AluJo SINE Alu -9 303 1 5051 214 86 91 chr6 98235077 98236681 -84178561 - L1ME1 LINE L1 -2712 3523 1829 4588 240 65 28 chr6 98236682 98237236 -84178006 - L1ME1 LINE L1 -4683 1713 1181 1725 157 89 7 chr6 98237236 98237517 -84177725 - AluSx SINE Alu -8 304 1 4588 240 65 28 chr6 98237517 98238581 -84176661 - L1ME1 LINE L1 -5215 1181 36 414 339 38 21 chr6 98239371 98239557 -84175685 + MIR3 SINE MIR 17 205 -3 2144 140 82 12 chr6 98240249 98240649 -84174593 + MSTC LTR MaLR 1 428 0 189 132 0 0 chr6 98241287 98241325 -84173917 + (A)n Simple_repeat Simple_repeat 1 38 0 2237 115 0 0 chr6 98242297 98242584 -84172658 + AluSx SINE Alu 1 287 -25 952 272 42 26 chr6 98242780 98243162 -84172080 + L1ME3A LINE L1 5560 5947 -223 2376 102 50 17 chr6 98243191 98243595 -84171647 + MSTA LTR MaLR 1 417 -11 1571 179 60 9 chr6 98243601 98243942 -84171300 + MLT1A1 LTR MaLR 5 365 0 290 292 118 25 chr6 98243975 98244136 -84171106 + L1ME3A LINE L1 5968 6143 -27 260 278 211 0 chr6 98244502 98244592 -84170650 + MIR3 SINE MIR 97 205 -3 263 308 187 39 chr6 98247677 98247859 -84167383 + MIR SINE MIR 53 261 -1 253 284 156 0 chr6 98248513 98248622 -84166620 + MIR SINE MIR 13 138 -124 745 264 16 16 chr6 98248739 98248921 -84166321 + MIR SINE MIR 7 188 -74 249 284 80 11 chr6 98249243 98249331 -84165911 + MIR SINE MIR 56 149 -113 562 280 87 31 chr6 98249371 98249660 -84165582 + L2 LINE L2 2988 3292 -21 18239 30 3 0 chr6 98250406 98253363 -84161879 + L1PA4 LINE L1 3194 6155 0 352 367 13 13 chr6 98255726 98255884 -84159358 - MIR3 SINE MIR -18 190 33 357 264 40 30 chr6 98256467 98256668 -84158574 - L1MC4 LINE L1 -4 8038 7836 818 229 37 5 chr6 98256716 98256934 -84158308 - L1ME2 LINE L1 -10 6154 5930 2145 156 41 27 chr6 98257692 98258134 -84157108 + MLT1C LTR MaLR 20 467 0 928 236 93 16 chr6 98258178 98258488 -84156754 - L1ME3A LINE L1 -17 6153 5820 2255 97 7 10 chr6 98258754 98259053 -84156189 + AluSq SINE Alu 3 300 -13 785 295 84 51 chr6 98259104 98259388 -84155854 - L1MC4a LINE L1 -831 5315 5042 2123 113 0 0 chr6 98259388 98259679 -84155563 - AluY SINE Alu -20 291 1 785 295 84 51 chr6 98259679 98260603 -84154639 - L1MC4a LINE L1 -1104 5042 4579 194 174 22 0 chr6 98260756 98260802 -84154440 + (TA)n Simple_repeat Simple_repeat 2 48 0 390 218 56 35 chr6 98260990 98261132 -84154110 - L1MC4a LINE L1 -1922 4224 4080 379 87 5 0 chr6 98261174 98261233 -84154009 - L1P4 LINE L1 -493 5658 5602 39 0 0 0 chr6 98261277 98261316 -84153926 + AT_rich Low_complexity Low_complexity 1 39 0 462 286 58 27 chr6 98261317 98261602 -84153640 - L1MC4a LINE L1 -2154 3992 3700 258 319 46 4 chr6 98261771 98262031 -84153211 - L1MC4a LINE L1 -2904 3242 2972 1733 152 19 39 chr6 98262184 98262494 -84152748 - AluJb SINE Alu -8 304 1 783 297 14 40 chr6 98262845 98263141 -84152101 - L2 LINE L2 -656 2658 2371 901 162 60 5 chr6 98263193 98263378 -84151864 + MSTD LTR MaLR 1 195 -201 362 132 0 15 chr6 98263468 98263536 -84151706 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 268 239 0 0 chr6 98263536 98263603 -84151639 + MSTD LTR MaLR 391 457 0 577 328 83 28 chr6 98263658 98263984 -84151258 + L2 LINE L2 2914 3257 -15 * 1977 259 109 34 chr6 98263983 98265028 -84150214 - L2 LINE L2 -1 3312 2170 284 252 161 71 chr6 98266241 98266396 -84148846 - L2 LINE L2 0 3272 3104 198 244 160 34 chr6 98266548 98266667 -84148575 + L3 LINE CR1 1218 1351 -226 2035 95 37 0 chr6 98266917 98267217 -84148025 - AluSq SINE Alu 0 310 1 1699 170 0 0 chr6 98268113 98268384 -84146858 - AluJo SINE Alu -1 311 41 22 0 0 0 chr6 98268675 98268697 -84146545 + AT_rich Low_complexity Low_complexity 1 22 0 309 306 109 14 chr6 98268845 98268992 -84146250 + MIR SINE MIR 49 209 -53 749 283 116 50 chr6 98269121 98269439 -84145803 - L2 LINE L2 0 3313 2975 5819 186 60 20 chr6 98269451 98270770 -84144472 + Charlie1a DNA MER1_type 15 1394 -1367 2184 94 0 7 chr6 98270770 98271047 -84144195 - AluSx SINE Alu -17 295 21 5819 186 60 20 chr6 98271047 98271107 -84144135 + Charlie1a DNA MER1_type 1394 1450 -5 378 238 88 88 chr6 98271136 98271317 -84143925 - L1MDa LINE L1 -1687 4442 4262 740 260 113 30 chr6 98271332 98271361 -84143881 - L1MDa LINE L1 -2887 3242 3217 949 244 23 5 chr6 98271361 98271578 -84143664 + MER58A DNA MER1_type 4 224 0 740 260 113 30 chr6 98271578 98271752 -84143490 - L1MDa LINE L1 -2912 3217 3059 391 62 0 31 chr6 98271752 98271817 -84143425 + L1PA8 LINE L1 6110 6172 0 740 260 113 30 chr6 98271817 98272178 -84143064 - L1MDa LINE L1 -3070 3059 2630 2091 132 0 16 chr6 98272383 98272406 -84142836 - AluSx SINE Alu -6 306 284 186 43 0 0 chr6 98272406 98272429 -84142813 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2091 132 0 16 chr6 98272429 98272716 -84142526 - AluSx SINE Alu -28 284 1 229 246 16 0 chr6 98272717 98272778 -84142464 - L1MDa LINE L1 -3783 2346 2285 398 289 54 54 chr6 98272792 98272996 -84142246 - L1MDa LINE L1 -4038 2272 2069 547 275 63 55 chr6 98273180 98273274 -84141968 - L1MDa LINE L1 -4549 1580 1488 1613 207 13 10 chr6 98273274 98273574 -84141668 - AluJo SINE Alu -11 301 1 547 275 63 55 chr6 98273574 98273843 -84141399 - L1MDa LINE L1 -4641 1488 1322 42352 38 1 2 chr6 98273977 98280137 -84135105 + L1PA4 LINE L1 2 6155 0 330 272 34 58 chr6 98280195 98280401 -84134841 - L1MDa LINE L1 -4922 1197 997 338 255 151 96 chr6 98280418 98280802 -84134440 - L1MDa LINE L1 -5155 964 560 2112 295 123 25 chr6 98281074 98282119 -84133123 - L2 LINE L2 -580 2734 1587 289 340 79 20 chr6 98282552 98282755 -84132487 - L3b LINE CR1 -252 1331 1117 343 286 15 53 chr6 98283619 98283752 -84131490 + MIR SINE MIR 63 190 -72 405 245 122 0 chr6 98283822 98283969 -84131273 + MER104 DNA Tc2 1 165 -15 307 250 50 25 chr6 98284777 98284857 -84130385 + L2 LINE L2 3153 3234 -38 261 0 0 0 chr6 98285266 98285295 -84129947 + (T)n Simple_repeat Simple_repeat 1 29 0 437 253 0 0 chr6 98285306 98285405 -84129837 + MLT1H LTR MaLR 247 345 -204 904 189 114 15 chr6 98285412 98285613 -84129629 - MER58A DNA MER1_type -2 222 2 469 134 31 118 chr6 98285630 98285757 -84129485 + MLT1H LTR MaLR 431 546 -3 338 354 82 6 chr6 98286023 98286181 -84129061 + L2 LINE L2 3103 3272 0 202 350 45 23 chr6 98287166 98287343 -84127899 - L2 LINE L2 -264 3008 2828 184 318 34 45 chr6 98287672 98287760 -84127482 - L2 LINE L2 0 3272 3186 247 257 54 68 chr6 98287843 98287917 -84127325 + L2 LINE L2 3191 3263 -9 478 242 0 0 chr6 98287920 98288011 -84127231 - L2 LINE L2 0 3313 3223 224 283 71 26 chr6 98288256 98288369 -84126873 - L2 LINE L2 -4 3309 3192 180 209 15 60 chr6 98288778 98288845 -84126397 - L2 LINE L2 -3140 174 111 223 241 17 0 chr6 98288970 98289028 -84126214 + CT-rich Low_complexity Low_complexity 2 60 0 220 150 25 88 chr6 98289768 98289848 -84125394 + GA-rich Low_complexity Low_complexity 3 77 0 233 274 53 62 chr6 98290022 98290135 -84125107 - MIR SINE MIR -32 230 119 705 306 128 20 chr6 98290563 98290962 -84124280 - L3 LINE CR1 -32 1545 1104 813 197 11 44 chr6 98290963 98291146 -84124096 - FRAM SINE Alu 0 176 1 379 322 91 7 chr6 98291147 98291290 -84123952 - L3 LINE CR1 -466 1111 957 308 304 78 37 chr6 98291354 98291545 -84123697 - L2 LINE L2 -165 3107 2909 2370 121 74 2 chr6 98291650 98292054 -84123188 - Tigger2 DNA MER2_type -5 2713 2281 433 127 0 0 chr6 98292061 98292124 -84123118 + MER8 DNA MER2_type 177 239 0 389 232 81 85 chr6 98298657 98298868 -84116374 - MIR SINE MIR -52 210 1 375 191 51 51 chr6 98302580 98302737 -84112505 + L1ME4a LINE L1 5965 6121 0 3296 137 21 21 chr6 98305810 98306414 -84108828 - L1MB3 LINE L1 -7 6176 5573 409 193 18 28 chr6 98306423 98306532 -84108710 - L1MC2 LINE L1 0 6344 6237 188 333 0 0 chr6 98306756 98306813 -84108429 - MIR3 SINE MIR -16 192 136 2601 89 31 31 chr6 98307735 98308149 -84107093 - L1MA1 LINE L1 0 6302 5889 1037 183 16 0 chr6 98308599 98308785 -84106457 + MER5A DNA MER1_type 1 189 0 340 200 93 50 chr6 98309596 98309721 -84105521 - L1ME4a LINE L1 -2 6119 5986 871 221 80 55 chr6 98309721 98310047 -84105195 - MER46C DNA MER2_type -2 336 3 340 200 93 50 chr6 98310047 98310061 -84105181 - L1ME4a LINE L1 -135 5986 5974 506 277 118 33 chr6 98310124 98310453 -84104789 - L1ME4a LINE L1 -252 5869 5513 183 219 141 16 chr6 98310561 98310625 -84104617 + L3b LINE CR1 1271 1342 -241 225 0 0 0 chr6 98312287 98312312 -84102930 + (TA)n Simple_repeat Simple_repeat 1 25 0 414 280 227 0 chr6 98312709 98312841 -84102401 + MIR3 SINE MIR 16 177 -31 1012 189 35 0 chr6 98313413 98313614 -84101628 + MER3 DNA MER1_type 2 209 0 241 308 29 39 chr6 98313691 98313795 -84101447 - L2 LINE L2 -6 3266 3164 285 209 0 0 chr6 98315740 98315807 -84099435 + (CACCAT)n Simple_repeat Simple_repeat 1 67 0 183 205 26 0 chr6 98315809 98315848 -84099394 - L2 LINE L2 -18 3254 3215 240 365 19 9 chr6 98315861 98315968 -84099274 - MIR SINE MIR -109 153 46 433 318 135 26 chr6 98316209 98316558 -84098684 + L2 LINE L2 2889 3275 -38 294 246 0 0 chr6 98317304 98317365 -84097877 - MIR3 SINE MIR -22 186 126 185 219 0 0 chr6 98317441 98317482 -84097760 - MIR SINE MIR -111 97 57 674 178 15 22 chr6 98317643 98317778 -84097464 - L1MB3 LINE L1 -2 6181 6048 191 245 213 21 chr6 98319263 98319357 -84095885 + MIR SINE MIR 38 149 -59 1180 140 0 0 chr6 98319375 98319554 -84095688 - AluJo SINE Alu -13 299 121 4927 173 32 12 chr6 98319756 98320312 -84094930 - L1MB7 LINE L1 -9 6175 5631 2370 160 24 27 chr6 98320312 98320682 -84094560 + MLT2D LTR ERVL 4 374 -40 510 31 0 0 chr6 98320682 98320746 -84094496 + (CA)n Simple_repeat Simple_repeat 2 65 0 2370 160 24 27 chr6 98320746 98320787 -84094455 + MLT2D LTR ERVL 374 414 0 4927 173 32 12 chr6 98320787 98321546 -84093696 - L1MB7 LINE L1 -553 5631 4838 2106 179 66 2 chr6 98321569 98322037 -84093205 - L1MB7 LINE L1 -1398 4748 4251 2254 95 0 3 chr6 98322502 98322843 -84092399 + AluSq SINE Alu 1 340 0 231 36 0 0 chr6 98322998 98323026 -84092216 + (TA)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr6 98323026 98323047 -84092195 + (T)n Simple_repeat Simple_repeat 1 21 0 269 297 49 49 chr6 98323872 98324053 -84091189 - MIR SINE MIR -58 204 31 1599 266 74 37 chr6 98324608 98325097 -84090145 + MER115 DNA AcHobo 187 693 0 2089 173 36 3 chr6 98326299 98326635 -84088607 + MER7A DNA MER2_type 2 346 0 477 277 103 128 chr6 98326644 98327087 -84088155 - L3 LINE CR1 -20 1557 1140 2246 93 0 0 chr6 98327087 98327404 -84087838 + AluSc SINE Alu 1 317 0 477 277 103 128 chr6 98327404 98327756 -84087486 - L3 LINE CR1 -437 1140 781 22 56 0 0 chr6 98328250 98328286 -84086956 + AT_rich Low_complexity Low_complexity 1 36 0 2382 288 122 33 chr6 98328892 98329797 -84085445 + L2 LINE L2 1541 2364 -949 7126 182 34 17 chr6 98329797 98331221 -84084021 - Charlie1a DNA MER1_type -3 1452 4 2382 288 122 33 chr6 98331221 98331906 -84083336 + L2 LINE L2 2364 3310 -3 6540 212 14 2 chr6 98332254 98333620 -84081622 + L1PA14 LINE L1 1644 3025 -3121 12801 176 73 0 chr6 98333623 98336622 -84078620 + L1PA14 LINE L1 3083 6159 -2 396 293 174 40 chr6 98337119 98337671 -84077571 + L2 LINE L2 2680 3312 -1 195 42 0 0 chr6 98338788 98338812 -84076430 + (CAGTA)n Simple_repeat Simple_repeat 1 24 0 462 299 85 11 chr6 98338814 98338991 -84076251 + MIR SINE MIR 18 207 -55 23 33 0 0 chr6 98339707 98339737 -84075505 + AT_rich Low_complexity Low_complexity 1 30 0 254 268 28 14 chr6 98339984 98340055 -84075187 + MIR SINE MIR 19 90 -118 185 205 51 0 chr6 98340083 98340122 -84075120 - L2 LINE L2 -52 3220 3180 26 64 0 0 chr6 98341450 98341497 -84073745 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr6 98341525 98341547 -84073695 + AT_rich Low_complexity Low_complexity 1 22 0 2216 85 3 17 chr6 98341547 98341841 -84073401 - AluSx SINE Alu -22 290 1 1137 213 91 69 chr6 98342999 98343449 -84071793 + MLT1C LTR MaLR 7 466 -1 2856 10 0 0 chr6 98343484 98343792 -84071450 + AluYa5 SINE Alu 1 308 -3 285 295 65 29 chr6 98343977 98344116 -84071126 - MER5A DNA MER1_type -10 179 36 392 192 0 32 chr6 98344414 98344515 -84070727 + MER5A DNA MER1_type 4 100 -89 504 313 99 30 chr6 98344521 98345057 -84070185 - L1MC4a LINE L1 -1895 5913 5341 208 182 0 23 chr6 98345137 98345181 -84070061 + A-rich Low_complexity Low_complexity 3 45 0 2316 94 0 0 chr6 98348296 98348593 -84066649 + AluSc SINE Alu 1 297 -12 5571 35 0 9 chr6 98348593 98349223 -84066019 + L1PA4 LINE L1 5528 6151 -4 1212 115 50 6 chr6 98349325 98349507 -84065735 - L1PA8A LINE L1 -5 6126 5937 380 60 0 0 chr6 98349507 98349555 -84065687 - L1PA7 LINE L1 -1 6153 6104 2206 87 0 10 chr6 98349555 98349853 -84065389 - L1P LINE L1 -1588 4558 4262 2170 128 0 3 chr6 98349853 98350166 -84065076 - AluSx SINE Alu 0 312 1 435 258 38 23 chr6 98350479 98350611 -84064631 - MIR SINE MIR -90 172 39 471 266 87 38 chr6 98350781 98350965 -84064277 + MIR SINE MIR 20 212 -50 6688 22 4 4 chr6 98353506 98354272 -84060970 - L1PA4 LINE L1 0 6155 5418 1511 161 64 11 chr6 98355441 98355708 -84059534 + AluJb SINE Alu 1 281 -31 462 295 116 18 chr6 98356302 98356526 -84058716 + MIR SINE MIR 3 248 -14 189 107 0 0 chr6 98356823 98356851 -84058391 + (T)n Simple_repeat Simple_repeat 1 28 0 327 298 32 24 chr6 98357901 98358025 -84057217 + MIR3 SINE MIR 73 197 -11 333 0 0 0 chr6 98358049 98358086 -84057156 + (CA)n Simple_repeat Simple_repeat 2 38 0 2180 115 16 0 chr6 98358216 98358520 -84056722 + AluSx SINE Alu 1 309 -3 1066 230 119 39 chr6 98359902 98360337 -84054905 - MLT1J LTR MaLR -41 470 1 642 283 69 44 chr6 98360827 98361145 -84054097 + L1ME4a LINE L1 5572 5897 -224 2156 107 0 0 chr6 98361196 98361476 -84053766 - AluSx SINE Alu -32 280 1 1930 155 3 3 chr6 98361794 98362084 -84053158 + AluSx SINE Alu 1 290 -22 236 262 99 35 chr6 98362664 98362836 -84052406 + L1ME4a LINE L1 5936 6118 -3 627 266 30 18 chr6 98363301 98363470 -84051772 + MIR SINE MIR 3 173 -89 243 324 178 9 chr6 98363535 98363748 -84051494 + L2 LINE L2 2807 3055 -217 427 179 0 26 chr6 98363770 98363848 -84051394 - L2 LINE L2 -10 3303 3228 326 353 57 0 chr6 98363942 98364064 -84051178 + L2 LINE L2 3182 3310 -3 298 267 23 12 chr6 98364244 98364330 -84050912 + L2 LINE L2 3183 3269 -3 302 183 14 0 chr6 98364330 98364401 -84050841 + GA-rich Low_complexity Low_complexity 2 73 0 204 225 0 0 chr6 98365143 98365183 -84050059 + L2 LINE L2 3218 3257 -15 302 263 2 23 chr6 98368314 98368425 -84046817 + L1ME LINE L1 5537 5647 -474 207 100 0 0 chr6 98368683 98368713 -84046529 + (CA)n Simple_repeat Simple_repeat 2 31 0 180 319 33 22 chr6 98368898 98368989 -84046253 - MIR3 SINE MIR -13 195 104 347 273 199 14 chr6 98369226 98369442 -84045800 - MIR SINE MIR -3 259 4 215 254 55 0 chr6 98370235 98370290 -84044952 + L2 LINE L2 2608 2665 -649 1407 249 84 12 chr6 98370486 98370862 -84044380 - LTR16B LTR ERVL -4 460 48 189 0 0 0 chr6 98370862 98370883 -84044359 + (CAGT)n Simple_repeat Simple_repeat 3 23 0 1407 249 84 12 chr6 98370883 98370935 -84044307 - LTR16B LTR ERVL -416 48 1 470 227 39 23 chr6 98370935 98371063 -84044179 + MER94 DNA DNA 5 134 0 191 346 69 85 chr6 98371106 98371286 -84043956 + L2 LINE L2 2929 3105 -167 1742 193 0 20 chr6 98371286 98371586 -84043656 - AluJb SINE Alu -18 294 1 191 346 69 85 chr6 98371586 98371665 -84043577 + L2 LINE L2 3105 3184 -88 184 179 77 0 chr6 98372630 98372669 -84042573 + L2 LINE L2 3272 3313 0 575 333 50 27 chr6 98372878 98373136 -84042106 + L3b LINE CR1 1269 1532 -51 210 314 115 6 chr6 98373250 98373356 -84041886 + MIR SINE MIR 36 147 -61 376 290 16 40 chr6 98374389 98374513 -84040729 - MIR3 SINE MIR -21 187 67 832 253 18 50 chr6 98375621 98375898 -84039344 + L2 LINE L2 3041 3308 -5 453 289 33 7 chr6 98377418 98377570 -84037672 - MLT1L LTR MaLR -28 587 432 250 402 137 12 chr6 98377800 98378210 -84037032 - L2 LINE L2 -6 3266 2806 22 0 0 0 chr6 98378247 98378269 -84036973 + AT_rich Low_complexity Low_complexity 1 22 0 2410 68 3 0 chr6 98380804 98381100 -84034142 + AluSc SINE Alu 1 297 -12 189 261 157 43 chr6 98381370 98381485 -84033757 - MIR SINE MIR -51 211 84 23 0 0 0 chr6 98381500 98381523 -84033719 + AT_rich Low_complexity Low_complexity 1 23 0 1948 168 0 13 chr6 98382352 98382668 -84032574 + AluJo SINE Alu 1 312 0 35 24 0 0 chr6 98383552 98383594 -84031648 + AT_rich Low_complexity Low_complexity 1 42 0 19261 33 5 1 chr6 98383923 98387057 -84028185 + L1PA4 LINE L1 3002 6147 -8 2168 130 0 10 chr6 98387346 98387654 -84027588 - AluSq SINE Alu -8 305 1 472 252 38 64 chr6 98387936 98388072 -84027170 + L1ME4a LINE L1 5592 5730 -391 1662 159 19 0 chr6 98388072 98388336 -84026906 + AluJb SINE Alu 1 269 -43 472 252 38 64 chr6 98388336 98388513 -84026729 + L1ME4a LINE L1 5730 5897 -224 2100 194 92 47 chr6 98388558 98389115 -84026127 - MER119 DNA MER1_type -1 582 1 21 57 0 0 chr6 98390206 98390241 -84025001 + AT_rich Low_complexity Low_complexity 1 35 0 591 203 93 71 chr6 98390316 98390498 -84024744 + L2 LINE L2 3119 3304 -9 232 318 63 0 chr6 98390783 98390909 -84024333 + L1ME3A LINE L1 146 279 -5926 21 0 0 0 chr6 98391018 98391039 -84024203 + AT_rich Low_complexity Low_complexity 1 21 0 2175 127 0 10 chr6 98391124 98391431 -84023811 + AluSx SINE Alu 1 304 -8 561 282 68 81 chr6 98391506 98392021 -84023221 + L1ME3A LINE L1 654 1159 -5046 2310 104 0 0 chr6 98392021 98392319 -84022923 + AluSg SINE Alu 1 298 -12 561 282 68 81 chr6 98392319 98392495 -84022747 + L1ME3A LINE L1 1159 1336 -4869 267 320 11 11 chr6 98392581 98392756 -84022486 + L1ME3A LINE L1 1553 1727 -4669 366 328 50 88 chr6 98392833 98393309 -84021933 + L1ME3A LINE L1 1849 2306 -4090 2252 194 8 40 chr6 98393311 98393838 -84021404 + L1ME1 LINE L1 5652 6161 -5 851 249 157 14 chr6 98394146 98394592 -84020650 + L1ME3A LINE L1 3782 4291 -1924 423 269 50 6 chr6 98394661 98394843 -84020399 + L1ME3A LINE L1 5817 6006 -233 22 0 0 0 chr6 98395248 98395270 -84019972 + AT_rich Low_complexity Low_complexity 1 22 0 1427 251 49 25 chr6 98395673 98396143 -84019099 + MER74B LTR ERVL 65 545 -77 322 302 33 39 chr6 98396737 98396919 -84018323 + L2 LINE L2 2616 2796 -518 24 53 0 0 chr6 98396994 98397032 -84018210 + AT_rich Low_complexity Low_complexity 1 38 0 350 340 95 52 chr6 98397032 98397338 -84017904 + L2 LINE L2 2918 3236 -36 561 325 66 0 chr6 98397339 98397551 -84017691 - MIR SINE MIR -3 259 34 186 324 69 10 chr6 98397676 98397778 -84017464 + MIR SINE MIR 36 143 -65 508 274 119 15 chr6 98398931 98399132 -84016110 - MIR SINE MIR -16 246 25 412 263 30 23 chr6 98399561 98399694 -84015548 + MIR SINE MIR 73 206 -56 410 305 37 33 chr6 98399756 98400028 -84015214 + L1MC4a LINE L1 5585 5857 -1951 25 90 0 0 chr6 98400152 98400219 -84015023 + AT_rich Low_complexity Low_complexity 1 67 0 2397 110 14 0 chr6 98400382 98400738 -84014504 - L1PB3 LINE L1 -5 6149 5789 316 96 0 0 chr6 98400794 98400854 -84014388 + L1M1 LINE L1 5782 5841 -328 279 0 0 0 chr6 98400856 98400887 -84014355 + (CA)n Simple_repeat Simple_repeat 2 32 0 2307 104 20 0 chr6 98400892 98401248 -84013994 - L1P5 LINE L1 -374 5780 5418 230 0 33 0 chr6 98401318 98401348 -84013894 + (TG)n Simple_repeat Simple_repeat 2 32 0 834 175 18 105 chr6 98401566 98401795 -84013447 - AluJo SINE Alu -17 295 87 323 257 10 49 chr6 98401818 98401930 -84013312 - MIR SINE MIR -93 115 6 423 325 75 62 chr6 98402261 98402633 -84012609 + L2 LINE L2 2891 3267 -5 412 70 0 0 chr6 98402891 98402948 -84012294 - L1PA16 LINE L1 -9 6157 6101 364 237 158 7 chr6 98405339 98405617 -84009625 + L1ME4a LINE L1 5798 6117 -4 187 356 0 17 chr6 98405772 98405831 -84009411 + L2 LINE L2 3139 3196 -76 614 260 48 52 chr6 98406695 98406926 -84008316 - MIR SINE MIR -21 241 12 461 281 43 22 chr6 98407740 98407925 -84007317 - MIR SINE MIR -10 252 64 219 194 16 16 chr6 98408486 98408548 -84006694 + A-rich Low_complexity Low_complexity 2 63 0 2858 10 0 0 chr6 98409322 98409635 -84005607 + AluYb8 SINE Alu 1 313 -5 1972 134 0 3 chr6 98409946 98410230 -84005012 - AluSg SINE Alu -19 291 9 233 338 0 0 chr6 98410827 98410895 -84004347 - MIR3 SINE MIR -48 160 93 448 321 67 38 chr6 98411538 98411778 -84003464 + MIR SINE MIR 2 248 -14 273 292 31 0 chr6 98413029 98413125 -84002117 + MLT1J1 LTR MaLR 63 161 -285 1917 144 2 84 chr6 98413166 98413583 -84001659 + MLT1B LTR MaLR 1 383 -7 345 296 22 56 chr6 98413589 98413768 -84001474 + MLT1J2 LTR MaLR 266 438 -12 208 295 16 0 chr6 98415159 98415220 -84000022 + CT-rich Low_complexity Low_complexity 3 64 0 370 331 86 0 chr6 98415925 98416100 -83999142 - MIR SINE MIR -21 241 52 1861 137 17 144 chr6 98417969 98418378 -83996864 + LTR18A LTR ERVL 1 357 0 2608 76 35 46 chr6 98418786 98419154 -83996088 + THE1B LTR MaLR 1 364 0 602 252 29 0 chr6 98419937 98420076 -83995166 - Charlie1 DNA MER1_type 0 2761 2619 * 738 232 90 43 chr6 98420054 98420287 -83994955 - Charlie1 DNA MER1_type -2517 244 1 327 285 44 38 chr6 98420631 98420789 -83994453 - L1ME4a LINE L1 -7 6114 5956 30 45 0 0 chr6 98420810 98420854 -83994388 + AT_rich Low_complexity Low_complexity 1 44 0 227 265 152 23 chr6 98420941 98421073 -83994169 - L1ME4a LINE L1 -145 5976 5828 755 275 75 43 chr6 98421122 98421564 -83993678 - L1ME4a LINE L1 -396 5725 5269 280 276 53 0 chr6 98422100 98422176 -83993066 + L2 LINE L2 3225 3304 -9 1854 118 97 31 chr6 98423124 98423412 -83991830 + AluJb SINE Alu 1 307 -5 743 214 156 16 chr6 98425406 98425598 -83989644 + MER20 DNA MER1_type 1 219 0 526 282 65 42 chr6 98425598 98425814 -83989428 + L2 LINE L2 2871 3091 -181 833 286 4 18 chr6 98426055 98426282 -83988960 - MIR SINE MIR -10 252 29 604 177 0 26 chr6 98426740 98426853 -83988389 + MER3 DNA MER1_type 7 116 -93 1879 172 20 0 chr6 98427106 98427408 -83987834 - AluJb SINE Alu -4 308 1 30 45 0 0 chr6 98427655 98427699 -83987543 + AT_rich Low_complexity Low_complexity 1 44 0 7502 62 3 0 chr6 98428057 98429209 -83986033 + L1PA7 LINE L1 4997 6152 -2 265 267 147 27 chr6 98430075 98430225 -83985017 - MIR SINE MIR -42 220 53 405 58 0 0 chr6 98430308 98430360 -83984882 + (CA)n Simple_repeat Simple_repeat 2 53 0 1581 106 134 0 chr6 98430899 98431145 -83984097 + AluSx SINE Alu 27 305 -7 396 0 0 0 chr6 98431584 98431628 -83983614 + (TG)n Simple_repeat Simple_repeat 1 44 0 322 261 145 29 chr6 98433103 98433344 -83981898 - MER102b DNA MER1_type 0 341 73 244 303 137 14 chr6 98433518 98433678 -83981564 + MIR SINE MIR 6 185 -61 242 241 36 116 chr6 98433673 98433785 -83981457 + L2 LINE L2 3152 3254 -18 * 2058 135 26 3 chr6 98434747 98435050 -83980192 - AluJb SINE Alu -2 310 1 1265 165 33 0 chr6 98436735 98436947 -83978295 + MER20 DNA MER1_type 1 219 0 198 103 0 0 chr6 98438487 98438516 -83976726 + (T)n Simple_repeat Simple_repeat 1 29 0 333 0 0 0 chr6 98438916 98438953 -83976289 + (TG)n Simple_repeat Simple_repeat 1 37 0 303 28 0 0 chr6 98439775 98439811 -83975431 + (CA)n Simple_repeat Simple_repeat 2 37 0 336 224 147 35 chr6 98440896 98441012 -83974230 + MER5B DNA MER1_type 44 172 -6 236 351 127 49 chr6 98441471 98441898 -83973344 - L2 LINE L2 -5 3267 2808 1307 186 98 3 chr6 98441931 98442227 -83973015 - MER33 DNA MER1_type 0 324 1 2483 144 24 59 chr6 98442642 98443182 -83972060 + LTR10A LTR ERV1 25 545 -64 375 314 102 8 chr6 98443196 98443314 -83971928 - L2 LINE L2 -7 3265 3137 1761 163 0 24 chr6 98443475 98443770 -83971472 - AluJb SINE Alu -24 288 1 21 71 0 0 chr6 98444627 98444669 -83970573 + AT_rich Low_complexity Low_complexity 1 42 0 620 281 54 48 chr6 98444993 98445062 -83970180 - L2 LINE L2 0 3313 3246 288 0 0 0 chr6 98445062 98445094 -83970148 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1705 143 17 34 chr6 98445098 98445392 -83969850 + AluJb SINE Alu 1 289 -23 620 281 54 48 chr6 98445392 98445518 -83969724 - L2 LINE L2 -69 3244 3120 1943 89 19 12 chr6 98445518 98445776 -83969466 + L1PA10 LINE L1 5901 6160 -8 620 281 54 48 chr6 98445776 98445908 -83969334 - L2 LINE L2 -193 3120 2978 444 247 294 0 chr6 98445916 98446062 -83969180 + MER5A DNA MER1_type 1 189 0 275 311 200 13 chr6 98446071 98446296 -83968946 - L2 LINE L2 -375 2939 2673 859 184 61 0 chr6 98446357 98446520 -83968722 + MER63A DNA MER1_type 1 173 -37 653 122 0 22 chr6 98446693 98446783 -83968459 - FRAM SINE Alu -18 158 71 1722 136 42 25 chr6 98448455 98448741 -83966501 + AluSx SINE Alu 1 291 -21 802 201 6 6 chr6 98449089 98449174 -83966068 + MER5B DNA MER1_type 10 94 -84 2252 96 7 3 chr6 98449174 98449477 -83965765 + AluSx SINE Alu 1 304 -8 802 201 6 6 chr6 98449477 98449560 -83965682 + MER5B DNA MER1_type 93 178 0 290 252 235 17 chr6 98449967 98450086 -83965156 - MER5B DNA MER1_type 0 178 34 459 214 182 104 chr6 98450118 98450338 -83964904 + MIR SINE MIR 9 245 -17 267 276 40 0 chr6 98450381 98450457 -83964785 + MIR SINE MIR 173 251 -11 288 233 167 0 chr6 98450774 98450864 -83964378 - MIR SINE MIR -56 152 48 345 24 0 0 chr6 98451968 98452010 -83963232 + (GA)n Simple_repeat Simple_repeat 1 42 0 541 286 79 25 chr6 98453465 98453684 -83961558 + MIR SINE MIR 40 259 -3 390 225 25 92 chr6 98454824 98454944 -83960298 + MIR SINE MIR 22 133 -129 681 265 121 5 chr6 98455227 98455450 -83959792 + MIR SINE MIR 14 262 0 613 193 42 17 chr6 98455535 98455654 -83959588 + FLAM_A SINE Alu 1 122 -11 23 33 0 0 chr6 98455654 98455684 -83959558 + AT_rich Low_complexity Low_complexity 1 30 0 279 214 0 0 chr6 98456162 98456218 -83959024 - L2 LINE L2 0 3272 3217 291 330 21 56 chr6 98456496 98456729 -83958513 - L2 LINE L2 -555 2759 2535 2379 75 7 0 chr6 98456922 98457217 -83958025 - AluY SINE Alu -14 297 1 450 0 0 0 chr6 98459793 98459843 -83955399 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 51 0 0 chr6 98460368 98460407 -83954835 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr6 98460866 98460897 -83954345 + AT_rich Low_complexity Low_complexity 1 31 0 1414 70 0 22 chr6 98460964 98461149 -83954093 + AluSg/x SINE Alu 118 298 -14 27 29 0 0 chr6 98461183 98461217 -83954025 + AT_rich Low_complexity Low_complexity 1 34 0 203 196 294 54 chr6 98461475 98461567 -83953675 + MIR SINE MIR 108 221 -41 3830 160 78 17 chr6 98461947 98462695 -83952547 - L1MC2 LINE L1 -10 6334 5542 2185 96 0 45 chr6 98462880 98463192 -83952050 - AluSp SINE Alu -15 298 1 208 143 0 0 chr6 98463457 98463492 -83951750 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 2264 116 0 0 chr6 98463917 98464218 -83951024 - AluSx SINE Alu -9 303 3 588 304 6 0 chr6 98464271 98464432 -83950810 - MIR SINE MIR 0 262 101 200 216 0 0 chr6 98464605 98464642 -83950600 + (CA)n Simple_repeat Simple_repeat 1 37 0 2229 103 0 17 chr6 98464910 98465210 -83950032 + AluSx SINE Alu 1 295 -17 1282 174 123 16 chr6 98465309 98465562 -83949680 + AluJo SINE Alu 3 282 -30 23 68 0 0 chr6 98466656 98466700 -83948542 + AT_rich Low_complexity Low_complexity 1 44 0 1751 157 48 3 chr6 98467229 98467523 -83947719 - AluJo SINE Alu 0 312 6 290 377 63 9 chr6 98467658 98467881 -83947361 + L2 LINE L2 2825 3059 -213 234 209 0 0 chr6 98467996 98468039 -83947203 + L2 LINE L2 3271 3313 0 34 24 0 0 chr6 98468284 98468325 -83946917 + AT_rich Low_complexity Low_complexity 1 41 0 344 307 174 32 chr6 98468325 98468762 -83946480 - L2 LINE L2 -6 3307 2809 29 0 0 0 chr6 98468996 98469025 -83946217 + AT_rich Low_complexity Low_complexity 1 29 0 1754 166 13 13 chr6 98469488 98469790 -83945452 + AluJb SINE Alu 1 302 -10 243 0 0 0 chr6 98470490 98470517 -83944725 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 460 232 9 9 chr6 98470518 98470630 -83944612 - L2 LINE L2 -13 3300 3189 490 192 10 0 chr6 98470693 98470797 -83944445 + L1MB2 LINE L1 6032 6136 -35 806 242 130 5 chr6 98470840 98471055 -83944187 - MIR SINE MIR -4 258 17 284 143 0 0 chr6 98471326 98471368 -83943874 - 5S rRNA rRNA -79 42 1 222 204 23 0 chr6 98471950 98471994 -83943248 + GA-rich Low_complexity Low_complexity 4 48 0 21 0 0 0 chr6 98472448 98472469 -83942773 + AT_rich Low_complexity Low_complexity 1 21 0 423 295 278 26 chr6 98472647 98472963 -83942279 + L3 LINE CR1 644 879 -698 1835 171 3 3 chr6 98472963 98473255 -83941987 + AluJb SINE Alu 1 292 -20 423 295 278 26 chr6 98473255 98473406 -83941836 + L3 LINE CR1 879 1229 -348 270 326 12 0 chr6 98473465 98473551 -83941691 + L3 LINE CR1 1486 1572 -5 25 51 0 0 chr6 98474325 98474364 -83940878 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr6 98474615 98474651 -83940591 + AT_rich Low_complexity Low_complexity 1 36 0 316 293 91 97 chr6 98475269 98475600 -83939642 - L2 LINE L2 0 3272 2944 738 249 58 97 chr6 98476220 98476601 -83938641 + MLT1J2 LTR MaLR 44 409 -41 21 36 0 0 chr6 98476612 98476640 -83938602 + AT_rich Low_complexity Low_complexity 1 28 0 11344 186 38 33 chr6 98476640 98477776 -83937466 - L1MA9 LINE L1 -38 6274 5145 2218 107 0 3 chr6 98477776 98478075 -83937167 - AluSg SINE Alu -12 298 1 11344 186 38 33 chr6 98478075 98480633 -83934609 - L1MA9 LINE L1 -1167 5145 2560 916 269 42 13 chr6 98480803 98481115 -83934127 - LTR16B LTR ERVL -143 321 1 589 288 212 40 chr6 98481122 98481806 -83933436 + L2 LINE L2 1429 2230 -1084 293 373 131 18 chr6 98481832 98482274 -83932968 + L2 LINE L2 2480 2971 -343 212 239 0 0 chr6 98482514 98482560 -83932682 + L2 LINE L2 3268 3313 0 426 296 22 62 chr6 98484222 98484496 -83930746 + L1MC4 LINE L1 7780 8042 0 264 295 29 43 chr6 98485706 98485845 -83929397 - MIR SINE MIR -16 246 110 410 304 107 0 chr6 98485853 98486021 -83929221 - MIR SINE MIR -6 256 71 2344 177 24 9 chr6 98486465 98486918 -83928324 + L1MB5 LINE L1 5709 6168 -6 705 302 112 10 chr6 98487298 98487709 -83927533 + L1MC/D LINE L1 5367 5819 -1989 2123 141 10 0 chr6 98488001 98488300 -83926942 - AluSx SINE Alu -7 305 4 1103 188 111 34 chr6 98488429 98488727 -83926515 + MER5C DNA MER1_type 1 321 -3 25 0 0 0 chr6 98489838 98489863 -83925379 + AT_rich Low_complexity Low_complexity 1 25 0 393 95 16 0 chr6 98489863 98489926 -83925316 - L1PB2 LINE L1 -3 6148 6085 2554 78 10 0 chr6 98489928 98490325 -83924917 - L1PB2 LINE L1 -155 5996 5555 3960 200 55 8 chr6 98490327 98491369 -83923873 + L1 LINE L1 4232 5322 -824 345 140 0 0 chr6 98491369 98491426 -83923816 + (A)n Simple_repeat Simple_repeat 1 57 0 1455 112 25 0 chr6 98491558 98491799 -83923443 + L1P5 LINE L1 5311 5557 -594 271 303 0 11 chr6 98492257 98492346 -83922896 + CT-rich Low_complexity Low_complexity 2 89 0 553 248 137 60 chr6 98492961 98493074 -83922168 + MIR SINE MIR 1 104 -158 1811 174 11 0 chr6 98493074 98493361 -83921881 + AluJo SINE Alu 1 290 -22 553 248 137 60 chr6 98493361 98493481 -83921761 + MIR SINE MIR 104 252 -10 183 346 161 0 chr6 98493816 98493946 -83921296 + MIR SINE MIR 63 213 -49 28 29 0 0 chr6 98495467 98495502 -83919740 + AT_rich Low_complexity Low_complexity 1 35 0 1018 141 32 16 chr6 98495503 98495688 -83919554 - L1PA13 LINE L1 -9 6154 5967 2064 123 24 0 chr6 98495693 98495985 -83919257 + AluSx SINE Alu 5 303 -9 1481 219 80 35 chr6 98497137 98497649 -83917593 + L1ME3A LINE L1 5629 6163 -7 192 328 151 25 chr6 98498523 98498642 -83916600 + L2 LINE L2 3127 3260 -12 1084 147 139 17 chr6 98498827 98499122 -83916120 - MER33 DNA MER1_type 0 324 1 2379 90 0 0 chr6 98499236 98499535 -83915707 + AluSx SINE Alu 1 299 -13 226 254 16 32 chr6 98500527 98500590 -83914652 - MIR3 SINE MIR -5 203 142 465 114 80 0 chr6 98500635 98500723 -83914519 - MER5A DNA MER1_type -77 112 18 190 278 14 42 chr6 98500760 98500832 -83914410 - L3 LINE CR1 -101 1476 1407 712 324 115 25 chr6 98500885 98501320 -83913922 - L3 LINE CR1 -312 1265 792 463 186 42 0 chr6 98501607 98501725 -83913517 - L1ME3A LINE L1 -208 5962 5840 812 263 85 0 chr6 98501739 98501975 -83913267 - MIR SINE MIR -5 257 2 1162 267 20 54 chr6 98502014 98502160 -83913082 - L1ME3A LINE L1 -344 5818 5669 4469 93 29 9 chr6 98502160 98502814 -83912428 - L1PA13 LINE L1 -14 6149 5483 1162 267 20 54 chr6 98502814 98503169 -83912073 - L1ME3A LINE L1 -493 5669 5334 2416 83 0 0 chr6 98503370 98503670 -83911572 - AluY SINE Alu -11 300 1 1718 132 4 0 chr6 98503721 98503972 -83911270 + AluSx SINE Alu 1 252 -60 38 0 0 0 chr6 98504206 98504244 -83910998 + AT_rich Low_complexity Low_complexity 1 38 0 311 293 28 9 chr6 98504244 98504350 -83910892 + L1MC4 LINE L1 6614 6721 -1321 312 359 84 0 chr6 98505072 98505203 -83910039 + MLT1J LTR MaLR 1 142 -369 279 330 34 17 chr6 98505374 98505492 -83909750 - L2 LINE L2 -357 2957 2838 1460 125 110 0 chr6 98505619 98505883 -83909359 - MER4A-int LTR ERV1 -6305 293 1 1591 128 8 84 chr6 98505886 98506260 -83908982 - MER4A LTR ERV1 0 664 261 913 79 86 0 chr6 98507051 98507191 -83908051 - MER41A-int LTR ERV1 -7604 152 1 3908 102 9 0 chr6 98507277 98507826 -83907416 - MER41A LTR ERV1 0 554 1 444 188 29 29 chr6 98507831 98508001 -83907241 - LTR23-int LTR ERV1 -3028 2095 1926 7657 87 5 30 chr6 98508304 98509499 -83905743 - LTR23-int LTR ERV1 -5014 2699 1535 6217 111 67 24 chr6 98509599 98509967 -83905275 + MER4-int LTR ERV1 4139 4490 -2108 1991 93 16 0 chr6 98509967 98510225 -83905017 - AluY SINE Alu -11 300 39 6217 111 67 24 chr6 98510225 98511053 -83904189 + MER4-int LTR ERV1 4490 5386 -1212 237 344 122 22 chr6 98511296 98511476 -83903766 + L2 LINE L2 1164 1361 -1953 209 326 30 91 chr6 98511507 98511639 -83903603 - L2 LINE L2 -12 3260 3137 1042 145 0 16 chr6 98511772 98511958 -83903284 - MLT1B LTR MaLR -16 374 192 407 111 0 14 chr6 98511988 98512060 -83903182 + (TTTTC)n Simple_repeat Simple_repeat 5 75 0 1966 121 13 36 chr6 98512073 98512380 -83902862 - AluJb SINE Alu -7 305 6 422 307 36 7 chr6 98512863 98513003 -83902239 - MIR SINE MIR -111 151 8 1750 176 10 0 chr6 98513235 98513531 -83901711 - AluJb SINE Alu -8 304 6 454 220 31 107 chr6 98513717 98513863 -83901379 + L1MEc LINE L1 2191 2281 -3934 1998 137 13 0 chr6 98513863 98514176 -83901066 + L1PA16 LINE L1 5836 6152 -14 454 220 31 107 chr6 98514176 98514298 -83900944 + L1MEc LINE L1 2281 2411 -3804 731 292 50 26 chr6 98514485 98514865 -83900377 - L1MCc LINE L1 -5958 465 77 417 306 57 35 chr6 98515122 98515494 -83899748 - L1MEc LINE L1 -4580 1816 1437 499 265 91 44 chr6 98515641 98515742 -83899500 - L1MEc LINE L1 -3653 2562 2467 1834 167 20 0 chr6 98515742 98516047 -83899195 - AluJb SINE Alu -1 311 1 499 265 91 44 chr6 98516047 98516405 -83898837 - L1MEc LINE L1 -3748 2467 2113 663 283 123 43 chr6 98516538 98517076 -83898166 - L1MEc LINE L1 -4445 1951 1371 474 239 68 8 chr6 98517492 98517609 -83897633 + L2 LINE L2 3189 3312 -1 22 65 0 0 chr6 98517640 98517671 -83897571 + AT_rich Low_complexity Low_complexity 1 31 0 367 267 0 52 chr6 98517737 98517853 -83897389 + MLT1J2 LTR MaLR 37 146 -304 502 200 70 0 chr6 98518626 98518741 -83896501 + MLT1J2 LTR MaLR 4 126 -324 508 253 90 24 chr6 98518780 98518946 -83896296 + MLT1J1 LTR MaLR 204 380 -66 339 275 8 23 chr6 98519031 98519162 -83896080 - LTR16C LTR ERVL 0 491 363 363 238 139 0 chr6 98519480 98519581 -83895661 - MLT1A2-int LTR MaLR -320 1051 937 485 306 20 7 chr6 98519710 98519857 -83895385 - MLT1A2-int LTR MaLR -518 853 705 906 253 58 66 chr6 98520059 98520486 -83894756 - MLT1A2-int LTR MaLR -781 590 167 1782 147 7 46 chr6 98521383 98521689 -83893553 + AluSx SINE Alu 1 294 -18 516 96 0 0 chr6 98521690 98521763 -83893479 + AluSp/q SINE Alu 236 308 -5 1671 133 30 15 chr6 98524652 98524923 -83890319 - LTR24B LTR ERV1 -239 337 63 3476 169 15 31 chr6 98525075 98525690 -83889552 + MER6A DNA MER2_type 1 605 0 788 249 93 9 chr6 98526205 98526430 -83888812 - MLT1H LTR MaLR -305 244 1 245 221 10 67 chr6 98526786 98526890 -83888352 - L1M4 LINE L1 -1528 4618 4521 241 295 64 51 chr6 98527143 98527299 -83887943 - L1P LINE L1 -1908 4238 4081 243 0 0 0 chr6 98527300 98527327 -83887915 + (T)n Simple_repeat Simple_repeat 1 27 0 1783 117 0 4 chr6 98527336 98527583 -83887659 - AluYb8 SINE Alu -72 246 1 242 180 0 20 chr6 98527719 98527769 -83887473 - L1P LINE L1 -2206 3940 3892 504 297 115 35 chr6 98527890 98528291 -83886951 + L2 LINE L2 1585 2017 -1297 357 272 0 0 chr6 98528991 98529083 -83886159 - MIR SINE MIR -89 173 82 911 229 14 120 chr6 98529112 98529478 -83885764 + MLT1A1 LTR MaLR 1 327 -38 239 294 49 12 chr6 98530086 98530249 -83884993 + L1M4 LINE L1 3805 3973 -2173 * 976 205 54 121 chr6 98530241 98530451 -83884791 + L1M4 LINE L1 4742 4908 -1238 849 231 103 64 chr6 98530451 98530811 -83884431 - MLT1A2 LTR MaLR 0 374 1 976 205 54 121 chr6 98530811 98531048 -83884194 + L1M4 LINE L1 4908 5159 -987 365 132 44 0 chr6 98531074 98531142 -83884100 + AluS SINE Alu 225 295 -5 22 88 0 0 chr6 98532155 98532212 -83883030 + AT_rich Low_complexity Low_complexity 1 57 0 2009 127 17 0 chr6 98532696 98532988 -83882254 + AluSc SINE Alu 1 297 -12 4659 160 16 0 chr6 98533241 98533952 -83881290 - MER72 LTR ERV1 0 722 1 329 314 42 0 chr6 98533954 98534072 -83881170 - MIR SINE MIR -28 234 112 1751 191 88 3 chr6 98534077 98534428 -83880814 + MER34C LTR ERV1 1 381 -204 943 156 27 137 chr6 98534432 98534695 -83880547 - MER2 DNA MER2_type 0 345 112 2216 161 12 9 chr6 98534830 98535172 -83880070 + MER61A LTR ERV1 1 343 0 2333 188 110 15 chr6 98535172 98535815 -83879427 + MER61A-int LTR ERV1 1 787 -4430 287 149 0 0 chr6 98535800 98535847 -83879395 + MER61A-int LTR ERV1 1320 1366 -3851 * 399 21 0 0 chr6 98535863 98535911 -83879331 + (TG)n Simple_repeat Simple_repeat 1 48 0 4310 107 29 36 chr6 98535911 98536641 -83878601 + MER61A-int LTR ERV1 1462 2186 -3031 332 43 109 0 chr6 98536635 98536681 -83878561 + MER61A-int LTR ERV1 2591 2641 -2576 * 855 171 91 87 chr6 98536797 98537061 -83878181 - MLT1B LTR MaLR -125 265 1 305 289 83 83 chr6 98537081 98537299 -83877943 + L1MEd LINE L1 268 485 -5634 7075 15 4 0 chr6 98537314 98538103 -83877139 - L1PA3 LINE L1 -2 6153 5362 1811 155 9 43 chr6 98538247 98538596 -83876646 - MER4B LTR ERV1 -273 337 1 3331 180 61 26 chr6 98538723 98539423 -83875819 - LTR8A LTR ERV1 0 727 3 352 314 97 20 chr6 98539526 98539774 -83875468 + L2 LINE L2 2853 3119 -194 12242 150 26 14 chr6 98540567 98542757 -83872485 + L1PA12 LINE L1 1085 3314 -4270 401 144 167 0 chr6 98542764 98542854 -83872388 + AluSq/x SINE Alu 4 108 -204 2244 73 7 7 chr6 98544090 98544376 -83870866 + AluSq SINE Alu 23 308 -5 810 227 54 98 chr6 98546497 98546896 -83868346 + MLT2C1 LTR ERVL 18 663 0 678 339 131 34 chr6 98548021 98548555 -83866687 + L1PA13 LINE L1 789 1374 -6200 314 235 0 25 chr6 98548721 98548802 -83866440 + L1PA13 LINE L1 2101 2179 -5402 180 0 0 0 chr6 98548941 98548961 -83866281 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1370 310 38 8 chr6 98549068 98549590 -83865652 + L1PA13 LINE L1 2185 2722 -4859 3441 260 32 33 chr6 98549709 98551011 -83864231 + L1 LINE L1 3574 4874 -2710 291 284 347 0 chr6 98556344 98556534 -83858708 + MIR SINE MIR 6 261 -1 925 144 86 54 chr6 98556639 98556861 -83858381 + MER30 DNA MER1_type 2 230 0 385 360 19 70 chr6 98557319 98557577 -83857665 + L2 LINE L2 3028 3272 0 200 284 0 0 chr6 98558605 98558672 -83856570 + A-rich Low_complexity Low_complexity 1 67 0 340 333 14 21 chr6 98559315 98559459 -83855783 + MIR SINE MIR 120 262 0 440 225 8 25 chr6 98559902 98560022 -83855220 + Charlie8 DNA MER1_type 66 183 -2234 925 183 5 73 chr6 98560099 98560290 -83854952 - MER45A DNA AcHobo 0 178 1 22 0 0 0 chr6 98562188 98562210 -83853032 + GC_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr6 98562756 98562792 -83852450 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 57 0 0 chr6 98563151 98563186 -83852056 + GC_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 98563359 98563380 -83851862 + GC_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 98563429 98563468 -83851774 + GC_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr6 98563496 98563528 -83851714 + GC_rich Low_complexity Low_complexity 1 32 0 33 43 0 0 chr6 98563534 98563581 -83851661 + GC_rich Low_complexity Low_complexity 1 47 0 292 200 32 42 chr6 98563752 98563847 -83851395 + G-rich Low_complexity Low_complexity 4 97 0 291 54 0 0 chr6 98563889 98563926 -83851316 + (CTG)n Simple_repeat Simple_repeat 1 37 0 196 50 0 50 chr6 98564142 98564182 -83851060 + (CGGGGG)n Simple_repeat Simple_repeat 1 38 0 1519 297 129 21 chr6 98566801 98567431 -83847811 - L2 LINE L2 -548 2766 2069 444 292 75 13 chr6 98567450 98567676 -83847566 - L2 LINE L2 -1791 1523 1284 32 26 0 0 chr6 98568214 98568253 -83846989 + AT_rich Low_complexity Low_complexity 1 39 0 333 244 9 35 chr6 98568314 98568429 -83846813 + L1ME LINE L1 5715 5826 -295 904 150 0 0 chr6 98568432 98568559 -83846683 + AluJb SINE Alu 1 127 -185 21 57 0 0 chr6 98568780 98568815 -83846427 + AT_rich Low_complexity Low_complexity 1 35 0 238 324 14 0 chr6 98568928 98568999 -83846243 - L2 LINE L2 -251 3062 2991 361 312 135 35 chr6 98569333 98569615 -83845627 - L2 LINE L2 -35 3237 2928 26 0 0 0 chr6 98571068 98571094 -83844148 + AT_rich Low_complexity Low_complexity 1 26 0 195 129 0 0 chr6 98571105 98571136 -83844106 + (T)n Simple_repeat Simple_repeat 1 31 0 1267 242 41 74 chr6 98572314 98572788 -83842454 - L1MC3 LINE L1 -1 8040 7595 210 294 176 20 chr6 98573039 98573141 -83842101 + L2 LINE L2 2921 3038 -234 993 172 182 8 chr6 98573204 98573445 -83841797 - L1MB2 LINE L1 -1 6170 5929 * 1029 134 0 79 chr6 98573439 98573655 -83841587 - L1MB2 LINE L1 -657 5526 5328 447 19 0 0 chr6 98573657 98573709 -83841533 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1441 184 21 49 chr6 98573713 98574001 -83841241 - AluJo SINE Alu -32 280 1 3913 228 39 7 chr6 98574001 98574955 -83840287 - L1MB2 LINE L1 -818 5328 4345 374 336 7 15 chr6 98574983 98575120 -83840122 + L2 LINE L2 3169 3304 -9 1674 72 0 5 chr6 98575255 98575463 -83839779 + L1PA8 LINE L1 5958 6164 -8 223 213 213 12 chr6 98575477 98575557 -83839685 - MIR SINE MIR -8 254 159 379 281 138 0 chr6 98575591 98575751 -83839491 + MIR SINE MIR 81 262 0 430 308 223 0 chr6 98576419 98576486 -83838756 - MIR SINE MIR -3 259 208 672 218 0 0 chr6 98576486 98576596 -83838646 - MER81 DNA DNA -2 112 3 430 308 223 0 chr6 98576596 98576739 -83838503 - MIR SINE MIR -54 208 2 209 133 0 44 chr6 98579949 98579994 -83835248 + (TG)n Simple_repeat Simple_repeat 2 44 0 368 295 35 70 chr6 98580523 98580781 -83834461 - MLT1K LTR MaLR -172 416 168 265 236 40 81 chr6 98581199 98581347 -83833895 - L2 LINE L2 -1008 2306 2165 802 325 86 27 chr6 98581353 98581842 -83833400 + L2 LINE L2 2431 2948 -366 231 339 99 25 chr6 98582334 98582455 -83832787 - MIR SINE MIR -111 151 22 544 244 107 6 chr6 98583669 98583837 -83831405 - MIR SINE MIR -9 253 69 2151 139 0 0 chr6 98583959 98584269 -83830973 - AluSx SINE Alu -2 310 1 1626 51 5 10 chr6 98584280 98584477 -83830765 - L1PA7 LINE L1 0 6154 5959 504 227 59 0 chr6 98584779 98584898 -83830344 - L1ME3A LINE L1 -5 6165 6040 1664 108 173 11 chr6 98584899 98585159 -83830083 + AluSx SINE Alu 1 302 0 863 242 0 0 chr6 98585203 98585360 -83829882 - FRAM SINE Alu -9 157 1 1900 158 3 3 chr6 98585493 98585785 -83829457 - AluJo SINE Alu -14 298 7 262 256 35 23 chr6 98586636 98586722 -83828520 + MER5B DNA MER1_type 92 178 0 189 286 79 0 chr6 98587862 98587925 -83827317 - MER5C DNA MER1_type -254 70 3 460 252 55 0 chr6 98587952 98588079 -83827163 + LTR16C LTR ERVL 358 491 0 1415 273 48 16 chr6 98588212 98588648 -83826594 + LTR16A LTR ERVL 1 450 0 276 262 155 10 chr6 98588654 98588757 -83826485 - L2 LINE L2 -23 3290 3173 992 234 14 14 chr6 98588765 98588983 -83826259 - MER58A DNA MER1_type 0 224 7 214 263 38 0 chr6 98588984 98589064 -83826178 - L2 LINE L2 -112 3201 3119 2061 135 0 20 chr6 98589102 98589405 -83825837 - AluSx SINE Alu -15 297 1 22 35 0 0 chr6 98589406 98589435 -83825807 + AT_rich Low_complexity Low_complexity 1 29 0 397 259 49 73 chr6 98589553 98589751 -83825491 - L1MC4a LINE L1 -1815 5993 5801 12925 137 44 59 chr6 98589751 98591102 -83824140 - Tigger1 DNA MER2_type -3 2415 1118 2378 93 7 0 chr6 98591102 98591404 -83823838 - AluSc SINE Alu -5 304 1 12925 137 44 59 chr6 98591404 98592504 -83822738 - Tigger1 DNA MER2_type -1300 1118 2 397 259 49 73 chr6 98592504 98592552 -83822690 - L1MC4a LINE L1 -2007 5801 5753 1546 209 81 100 chr6 98592552 98592620 -83822622 - MLT2B1 LTR ERVL 0 520 452 1262 207 0 0 chr6 98592620 98592852 -83822390 + MER46A DNA MER2_type 5 236 0 1546 209 81 100 chr6 98592852 98593313 -83821929 - MLT2B1 LTR ERVL -68 452 1 1447 214 36 93 chr6 98593313 98593388 -83821854 - L1MC4a LINE L1 -748 5398 5320 1778 178 0 19 chr6 98593388 98593702 -83821540 - AluJb SINE Alu 0 312 5 1447 214 36 93 chr6 98593702 98594062 -83821180 - L1MC4a LINE L1 -826 5320 5344 2185 85 0 31 chr6 98594062 98594389 -83820853 - AluSq SINE Alu 0 318 1 1447 214 36 93 chr6 98594389 98594531 -83820711 - L1MC4a LINE L1 -801 5345 5197 1368 108 0 10 chr6 98595814 98596008 -83819234 - MER115 DNA AcHobo -1 692 501 1942 143 4 0 chr6 98597318 98597598 -83817644 + AluSx SINE Alu 1 281 -31 308 239 11 0 chr6 98597611 98597699 -83817543 + L1MC4 LINE L1 6617 6705 -1337 275 157 45 0 chr6 98597703 98597792 -83817450 + (TA)n Simple_repeat Simple_repeat 2 94 0 243 275 0 11 chr6 98597794 98597885 -83817357 + L1MC4 LINE L1 6614 6703 -1339 327 242 0 121 chr6 98599454 98599517 -83815725 + MIR SINE MIR 43 85 -123 1742 155 16 36 chr6 98599517 98599826 -83815416 - AluJb SINE Alu -9 303 1 327 242 0 121 chr6 98599826 98599886 -83815356 + MIR SINE MIR 85 151 -57 328 249 12 144 chr6 98599901 98599968 -83815274 - MER5A DNA MER1_type -1 188 114 2567 131 5 13 chr6 98599968 98600343 -83814899 - THE1C LTR MaLR 0 375 4 10892 105 41 39 chr6 98600346 98601924 -83813318 - THE1C-int LTR MaLR 0 1580 1 2248 114 74 17 chr6 98601924 98602275 -83812967 - THE1C LTR MaLR 0 375 5 328 249 12 144 chr6 98602275 98602375 -83812867 - MER5A DNA MER1_type -75 114 39 241 303 40 20 chr6 98602289 98602388 -83812854 + MER5B DNA MER1_type 65 165 -13 * 375 296 127 0 chr6 98602558 98602700 -83812542 - MIR SINE MIR -28 234 75 236 311 11 11 chr6 98602908 98602998 -83812244 - L2 LINE L2 -1001 2313 2224 1649 203 28 38 chr6 98604130 98604566 -83810676 + MLT2B1 LTR ERVL 1 414 0 3301 211 39 28 chr6 98604566 98604720 -83810522 + ERVL-B1 LTR ERVL 1 152 -5612 2233 125 3 0 chr6 98604720 98605023 -83810219 + AluSx SINE Alu 1 304 -8 3301 211 39 28 chr6 98605023 98605590 -83809652 + ERVL-B1 LTR ERVL 152 730 -5034 * 8686 129 10 17 chr6 98605584 98606905 -83808337 + ERVL-B2 LTR ERVL 4444 5755 -9 2111 188 103 41 chr6 98606907 98607347 -83807895 + MLT2B2 LTR ERVL 1 475 -40 2349 153 50 29 chr6 98607347 98607764 -83807478 + MSTB LTR MaLR 1 426 0 2111 188 103 41 chr6 98607764 98607808 -83807434 + MLT2B2 LTR ERVL 475 515 0 288 241 63 0 chr6 98608121 98608200 -83807042 + MIR SINE MIR 155 238 -24 197 339 0 0 chr6 98608170 98608229 -83807013 + L2 LINE L2 3254 3312 -1 * 2214 131 0 0 chr6 98609357 98609669 -83805573 + AluSx SINE Alu 1 312 0 396 40 0 0 chr6 98609749 98609799 -83805443 + (GA)n Simple_repeat Simple_repeat 1 50 0 2540 68 3 0 chr6 98609825 98610133 -83805109 - AluY SINE Alu -2 309 1 474 241 230 16 chr6 98611262 98611449 -83803793 - MIR SINE MIR -31 231 5 1143 251 114 27 chr6 98612747 98613150 -83802092 + LTR16A LTR ERVL 12 449 -1 182 378 81 37 chr6 98615165 98615411 -83799831 - L2 LINE L2 -403 2911 2655 246 263 35 0 chr6 98615891 98615948 -83799294 - LTR67 LTR ERVL -365 192 134 1501 210 20 7 chr6 98615977 98616277 -83798965 + AluJo SINE Alu 1 304 -8 747 297 127 32 chr6 98616562 98616659 -83798583 + L2 LINE L2 2481 2567 -746 862 168 14 136 chr6 98616659 98616759 -83798483 - MER5A DNA MER1_type 0 189 127 1475 179 50 21 chr6 98616759 98617039 -83798203 - AluJb SINE Alu -24 288 1 862 168 14 136 chr6 98617039 98617152 -83798090 - MER5A DNA MER1_type -62 127 2 747 297 127 32 chr6 98617152 98617739 -83797503 + L2 LINE L2 2567 3313 0 2140 127 92 82 chr6 98617763 98618187 -83797055 + MSTA LTR MaLR 1 428 0 3331 117 48 48 chr6 98619589 98619936 -83795306 - L1MB4 LINE L1 -1 6179 5830 1856 144 42 23 chr6 98619936 98620242 -83795000 - AluJb SINE Alu 0 312 1 3331 117 48 48 chr6 98620242 98620484 -83794758 - L1MB4 LINE L1 -349 5831 5590 228 260 82 0 chr6 98621513 98621586 -83793656 + MIR SINE MIR 171 249 -13 547 208 130 12 chr6 98621692 98621915 -83793327 - MLT1K LTR MaLR -3 585 295 218 220 0 20 chr6 98622060 98622110 -83793132 + L2 LINE L2 3219 3267 -5 324 235 76 24 chr6 98622244 98622358 -83792884 - MIR SINE MIR -63 145 20 1890 159 0 26 chr6 98622474 98622782 -83792460 - AluJo SINE Alu -10 302 3 327 337 42 30 chr6 98622860 98623026 -83792216 - L3b LINE CR1 -263 1320 1153 533 312 67 41 chr6 98623841 98624305 -83790937 + L1M4 LINE L1 2268 2743 -3403 1569 206 69 58 chr6 98625188 98625336 -83789906 + L1MB8 LINE L1 5618 5763 -415 2239 95 0 0 chr6 98625336 98625643 -83789599 + AluSq SINE Alu 1 307 0 1569 206 69 58 chr6 98625643 98626047 -83789195 + L1MB8 LINE L1 5763 6177 -1 990 264 130 28 chr6 98626163 98626709 -83788533 + L1ME4a LINE L1 5515 6116 -5 279 0 0 0 chr6 98626945 98626976 -83788266 + (TG)n Simple_repeat Simple_repeat 1 31 0 205 253 67 27 chr6 98627801 98627876 -83787366 + MIR SINE MIR 89 166 -96 2283 100 0 7 chr6 98629089 98629398 -83785844 + AluSg1 SINE Alu 1 307 -2 711 298 28 5 chr6 98630341 98630559 -83784683 - MIR SINE MIR -21 241 19 200 301 0 41 chr6 98631859 98631932 -83783310 + L2 LINE L2 3199 3268 -4 663 259 5 30 chr6 98633094 98633291 -83781951 - MIR SINE MIR 0 262 71 2241 185 16 36 chr6 98633324 98633813 -83781429 - L1MA9 LINE L1 -38 6274 5794 330 26 0 0 chr6 98633813 98633852 -83781390 + (TC)n Simple_repeat Simple_repeat 2 40 0 2241 185 16 36 chr6 98633852 98633865 -83781377 - L1MA9 LINE L1 -518 5794 5782 400 163 11 11 chr6 98633865 98633957 -83781285 + (TA)n Simple_repeat Simple_repeat 1 92 0 403 279 13 0 chr6 98634063 98634217 -83781025 + (TA)n Simple_repeat Simple_repeat 1 156 0 276 114 14 29 chr6 98634248 98634318 -83780924 + (TA)n Simple_repeat Simple_repeat 2 70 0 256 267 47 0 chr6 98634324 98634410 -83780832 - L1MC4 LINE L1 -1340 6702 6613 2722 192 74 11 chr6 98634411 98635057 -83780185 - L1MA9 LINE L1 -800 5346 4660 302 261 43 11 chr6 98635138 98635230 -83780012 - MIR SINE MIR -73 189 95 2864 152 13 21 chr6 98636690 98637157 -83778085 - MLT1C LTR MaLR 0 467 5 761 241 25 0 chr6 98638341 98638503 -83776739 - MIR3 SINE MIR -6 202 37 1735 226 78 13 chr6 98641834 98642344 -83772898 - L1MDa LINE L1 -3519 3021 2479 535 236 69 0 chr6 98642365 98642509 -83772733 + LTR37B LTR ERV1 1 154 -314 367 274 133 0 chr6 98642510 98642623 -83772619 - MIR SINE MIR -133 129 2 39 80 0 0 chr6 98644122 98644210 -83771032 + AT_rich Low_complexity Low_complexity 1 88 0 373 266 53 9 chr6 98644606 98644719 -83770523 - MIR SINE MIR 0 262 145 203 138 0 0 chr6 98644720 98644749 -83770493 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 652 177 9 9 chr6 98644750 98644967 -83770275 + CT-rich Low_complexity Low_complexity 1 217 0 189 74 0 0 chr6 98645021 98645048 -83770194 + (CTTG)n Simple_repeat Simple_repeat 2 28 0 2037 136 13 3 chr6 98645053 98645361 -83769881 - AluSx SINE Alu -1 311 1 444 354 14 0 chr6 98645361 98645508 -83769734 - MIR SINE MIR -111 151 3 423 0 0 0 chr6 98645655 98645702 -83769540 + (CA)n Simple_repeat Simple_repeat 2 48 0 3373 198 71 12 chr6 98645928 98646665 -83768577 + L1ME1 LINE L1 5343 6122 -44 268 330 19 29 chr6 98647335 98647438 -83767804 - L2 LINE L2 -2 3270 3169 1230 146 5 0 chr6 98647492 98647677 -83767565 + MER2 DNA MER2_type 1 186 -159 242 119 0 0 chr6 98647718 98647760 -83767482 + MER2 DNA MER2_type 154 195 -150 375 226 0 0 chr6 98647804 98647866 -83767376 + MER2 DNA MER2_type 280 341 -4 304 238 52 22 chr6 98648289 98648407 -83766835 + MER5A DNA MER1_type 9 120 -58 435 270 0 0 chr6 98649137 98649226 -83766016 + MIR3 SINE MIR 89 177 -31 417 221 16 94 chr6 98649516 98649643 -83765599 - MIR SINE MIR -118 144 28 193 333 60 0 chr6 98649909 98649993 -83765249 - MIR SINE MIR -97 165 77 297 0 0 0 chr6 98650435 98650468 -83764774 + (T)n Simple_repeat Simple_repeat 1 33 0 644 226 92 51 chr6 98650519 98650714 -83764528 + MIR SINE MIR 8 210 -52 33 56 0 0 chr6 98651778 98651832 -83763410 + AT_rich Low_complexity Low_complexity 1 54 0 510 313 61 12 chr6 98651838 98652084 -83763158 + MARNA DNA Mariner 279 536 -50 953 218 111 4 chr6 98652090 98652324 -83762918 + MIR SINE MIR 3 261 -1 251 235 24 24 chr6 98652441 98652526 -83762716 + CT-rich Low_complexity Low_complexity 1 85 0 66 25 0 0 chr6 98657653 98657733 -83757509 + AT_rich Low_complexity Low_complexity 1 80 0 773 263 61 20 chr6 98658096 98658343 -83756899 - MIR SINE MIR -3 259 3 2279 95 17 0 chr6 98658542 98658837 -83756405 - AluSg SINE Alu -10 300 1 204 242 0 15 chr6 98659356 98659422 -83755820 + (TA)n Simple_repeat Simple_repeat 1 65 0 351 0 0 0 chr6 98659451 98659490 -83755752 + (TA)n Simple_repeat Simple_repeat 1 39 0 2138 111 31 0 chr6 98659718 98660007 -83755235 - AluSx SINE Alu -14 298 1 408 111 0 0 chr6 98660143 98660206 -83755036 + (TAG)n Simple_repeat Simple_repeat 1 63 0 475 241 123 59 chr6 98660236 98660423 -83754819 + MIR SINE MIR 53 251 -11 1280 150 5 0 chr6 98661793 98662000 -83753242 - L1PA16 LINE L1 -4 6162 5955 324 271 143 69 chr6 98662269 98662646 -83752596 - L1ME4a LINE L1 -232 5889 5485 229 364 10 38 chr6 98662646 98662855 -83752387 + L2 LINE L2 1977 2179 -1135 259 299 23 0 chr6 98662940 98663027 -83752215 + L2 LINE L2 2632 2720 -594 243 269 102 46 chr6 98664842 98664950 -83750292 + L2 LINE L2 3200 3313 0 293 287 79 0 chr6 98665932 98666033 -83749209 + MIR3 SINE MIR 47 155 -53 303 130 0 0 chr6 98666033 98666087 -83749155 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 275 254 16 0 chr6 98666942 98667005 -83748237 + L2 LINE L2 3206 3269 -3 2295 95 0 0 chr6 98668433 98668728 -83746514 - AluSc SINE Alu -14 295 1 998 303 70 11 chr6 98669145 98669502 -83745740 + MLT1I LTR MaLR 30 407 -2 696 198 6 11 chr6 98669990 98670167 -83745075 + CT-rich Low_complexity Low_complexity 4 179 0 352 330 8 0 chr6 98670178 98670296 -83744946 - L2 LINE L2 -1 3312 3194 421 311 61 0 chr6 98671118 98671282 -83743960 + MIR SINE MIR 40 213 -49 1156 233 69 85 chr6 98671864 98672319 -83742923 + MER34 LTR ERV1 1 449 -93 1625 174 6 64 chr6 98672319 98672496 -83742746 - AluJb SINE Alu -4 308 157 2121 112 3 0 chr6 98672496 98672782 -83742460 - AluSx SINE Alu -15 297 11 1625 174 6 64 chr6 98672782 98672931 -83742311 - AluJb SINE Alu -155 157 1 1156 233 69 85 chr6 98672931 98672956 -83742286 + MER34 LTR ERV1 449 473 -69 367 147 51 19 chr6 98673142 98673299 -83741943 + (TA)n Simple_repeat Simple_repeat 1 162 0 313 278 56 24 chr6 98673382 98673643 -83741599 - MER110A LTR ERV1 0 468 158 353 177 13 63 chr6 98673881 98673960 -83741282 - MLT1L LTR MaLR -538 77 3 795 275 113 15 chr6 98674236 98674633 -83740609 + L2 LINE L2 2835 3270 -43 2592 187 22 30 chr6 98674636 98675145 -83740097 - LTR22 LTR ERVK -4 505 1 352 190 219 44 chr6 98675180 98675317 -83739925 - MIR SINE MIR 0 262 102 30 0 0 0 chr6 98675371 98675401 -83739841 + AT_rich Low_complexity Low_complexity 1 30 0 2029 134 3 0 chr6 98675640 98675949 -83739293 - AluSx SINE Alu 0 310 1 675 304 101 41 chr6 98676378 98676911 -83738331 - L2 LINE L2 -5 3267 2704 503 330 123 18 chr6 98676989 98677265 -83737977 - L2 LINE L2 -993 2321 2017 1048 265 196 37 chr6 98677267 98677753 -83737489 - MLT1K LTR MaLR -6 582 20 2275 102 16 0 chr6 98677835 98678139 -83737103 + AluSg SINE Alu 1 309 -1 257 337 45 65 chr6 98678299 98678498 -83736744 - L2 LINE L2 -173 3099 2905 207 0 0 0 chr6 98678973 98678996 -83736246 + (TA)n Simple_repeat Simple_repeat 2 24 0 776 156 8 33 chr6 98678997 98679119 -83736123 - FLAM_A SINE Alu -14 119 1 270 189 0 42 chr6 98679797 98679892 -83735350 + GA-rich Low_complexity Low_complexity 4 94 0 303 113 0 0 chr6 98681244 98681297 -83733945 + (TG)n Simple_repeat Simple_repeat 1 53 0 * 762 73 0 0 chr6 98681296 98681406 -83733836 + (GA)n Simple_repeat Simple_repeat 1 110 0 255 303 119 0 chr6 98681685 98681794 -83733448 + MIR SINE MIR 28 149 -113 21 57 0 0 chr6 98681994 98682029 -83733213 + AT_rich Low_complexity Low_complexity 1 35 0 522 162 0 0 chr6 98682029 98682103 -83733139 + AluJo SINE Alu 123 196 -116 1044 154 0 12 chr6 98682705 98682874 -83732368 - FRAM SINE Alu -6 170 4 374 289 206 24 chr6 98683071 98683611 -83731631 - L1MC4a LINE L1 -539 5582 5261 353 383 21 12 chr6 98684189 98684429 -83730813 - HERV16 LTR ERVL -1793 3861 3620 736 310 84 4 chr6 98684519 98684793 -83730449 - HERV16 LTR ERVL -2320 3334 3039 2118 325 71 34 chr6 98684802 98685727 -83729515 - HERV16 LTR ERVL -3047 2717 1828 1671 110 7 75 chr6 98685727 98686008 -83729234 - AluSx SINE Alu -11 301 40 2118 325 71 34 chr6 98686008 98687408 -83727834 - HERV16 LTR ERVL -3936 1828 149 386 280 16 55 chr6 98687987 98688169 -83727073 - L1MEd LINE L1 -5934 185 11 2094 94 4 4 chr6 98689331 98689608 -83725634 - AluSp SINE Alu -13 300 24 317 307 57 14 chr6 98690588 98690728 -83724514 - L2 LINE L2 -815 2499 2354 548 278 25 0 chr6 98690731 98690754 -83724488 - L1MA10 LINE L1 0 6334 6312 3810 203 18 47 chr6 98690754 98691765 -83723477 - L1ME1 LINE L1 -17 6149 5172 308 314 0 0 chr6 98691765 98691851 -83723391 - L2 LINE L2 -968 2346 2261 819 204 32 11 chr6 98691864 98692050 -83723192 + L1ME1 LINE L1 5976 6165 -1 311 213 82 41 chr6 98692069 98692191 -83723051 + L1MC5 LINE L1 7806 7932 -29 1443 291 121 40 chr6 98692212 98693038 -83722204 + L2 LINE L2 1714 2606 -708 22 0 0 0 chr6 98693593 98693615 -83721627 + AT_rich Low_complexity Low_complexity 1 22 0 1513 170 58 11 chr6 98693866 98694142 -83721100 + AluJb SINE Alu 18 306 -6 2188 99 7 7 chr6 98694252 98694545 -83720697 + AluSg SINE Alu 2 294 -16 715 223 8 0 chr6 98695043 98695173 -83720069 - FLAM_C SINE Alu -11 132 2 523 231 119 33 chr6 98695357 98695600 -83719642 - HAL1 LINE L1 0 2507 2244 438 231 30 45 chr6 98695619 98695753 -83719489 + L2 LINE L2 3182 3313 0 621 327 36 5 chr6 98695941 98696161 -83719081 + MIR SINE MIR 17 243 -19 302 264 38 28 chr6 98696663 98696769 -83718473 - L1P4 LINE L1 -309 5857 5751 626 270 106 10 chr6 98697468 98697761 -83717481 - L1MC4 LINE L1 0 8042 7722 956 226 0 5 chr6 98697769 98697955 -83717287 - MER58A DNA MER1_type 0 224 40 23 0 0 0 chr6 98697965 98697988 -83717254 + AT_rich Low_complexity Low_complexity 1 23 0 2967 136 17 8 chr6 98698235 98698714 -83716528 - L1MB3 LINE L1 -10 6173 5691 368 353 80 47 chr6 98698860 98699546 -83715696 + L2 LINE L2 2559 3263 -9 585 321 78 48 chr6 98699561 98700039 -83715203 + L2 LINE L2 2781 3272 0 2473 205 24 16 chr6 98700683 98701216 -83714026 + LTR27 LTR ERV1 7 1251 -137 1913 190 6 23 chr6 98703500 98703667 -83711575 - MER2 DNA MER2_type 0 345 177 2433 145 84 5 chr6 98703667 98704060 -83711182 + MSTB LTR MaLR 3 426 0 1913 190 6 23 chr6 98704060 98704240 -83711002 - MER2 DNA MER2_type -168 177 4 465 311 0 0 chr6 98704278 98704400 -83710842 + MIR SINE MIR 137 258 -4 2155 170 5 15 chr6 98704561 98704950 -83710292 - L1MB3 LINE L1 -9 6174 5790 184 300 0 89 chr6 98705111 98705201 -83710041 + MIR SINE MIR 22 103 -159 289 229 84 36 chr6 98705272 98705355 -83709887 + MIR SINE MIR 104 190 -72 213 293 159 25 chr6 98705593 98705750 -83709492 - L2 LINE L2 -63 3250 3073 690 144 10 0 chr6 98705935 98706039 -83709203 - AluJb SINE Alu -207 105 1 2361 72 0 59 chr6 98706075 98706396 -83708846 - AluY SINE Alu -9 302 1 447 230 182 14 chr6 98706483 98706631 -83708611 - MER5A DNA MER1_type -7 182 10 287 336 8 47 chr6 98706640 98706768 -83708474 + L2 LINE L2 3191 3313 0 28 61 0 0 chr6 98708848 98708897 -83706345 + AT_rich Low_complexity Low_complexity 1 49 0 1596 187 37 0 chr6 98708915 98709215 -83706027 - AluJo SINE Alu -1 311 1 225 219 141 0 chr6 98709638 98709702 -83705540 - L2 LINE L2 -18 3254 3182 403 273 180 0 chr6 98713845 98713973 -83701269 - MER5A DNA MER1_type -1 188 38 398 277 85 8 chr6 98714369 98714499 -83700743 + MIR SINE MIR 2 141 -121 398 390 18 0 chr6 98714762 98714931 -83700311 - L2 LINE L2 -375 2939 2768 598 191 33 82 chr6 98715014 98715105 -83700137 - MIR SINE MIR -15 247 153 1317 188 116 29 chr6 98715105 98715381 -83699861 - AluJb SINE Alu -1 301 2 598 191 33 82 chr6 98715381 98715398 -83699844 - MIR SINE MIR -109 153 137 2331 129 3 30 chr6 98715398 98715769 -83699473 - MER46B DNA MER2_type 0 236 1 598 191 33 82 chr6 98715769 98715842 -83699400 - MIR SINE MIR -125 137 74 3724 144 46 23 chr6 98717176 98717959 -83697283 - MER4D LTR ERV1 0 872 12 721 292 145 30 chr6 98718002 98718375 -83696867 - L2 LINE L2 -7 3306 2891 3652 129 7 19 chr6 98718386 98718967 -83696275 + MER4B LTR ERV1 1 574 -36 324 336 27 7 chr6 98719014 98719160 -83696082 - L2 LINE L2 -454 2860 2712 274 167 0 0 chr6 98719181 98719229 -83696013 - L1MC4 LINE L1 0 8042 7995 1457 114 93 29 chr6 98719229 98719509 -83695733 + THE1C LTR MaLR 1 298 -77 1065 171 43 0 chr6 98719513 98719776 -83695466 - L1MC4 LINE L1 -642 7400 7083 2140 291 152 35 chr6 98719777 98721111 -83694131 - L2 LINE L2 -635 2679 1190 2153 91 3 14 chr6 98721164 98721500 -83693742 - AluSx SINE Alu 0 333 1 201 299 87 63 chr6 98721504 98721631 -83693611 - MIR SINE MIR -51 211 82 1932 149 3 13 chr6 98721762 98722078 -83693164 + AluSq SINE Alu 1 313 0 926 260 13 13 chr6 98722232 98722467 -83692775 + MIR SINE MIR 8 242 -20 1776 182 16 7 chr6 98722620 98722928 -83692314 - AluJo SINE Alu -1 311 1 378 297 68 14 chr6 98723827 98723975 -83691267 + MER5B DNA MER1_type 3 158 -20 200 233 0 0 chr6 98724035 98724078 -83691164 + (TA)n Simple_repeat Simple_repeat 1 43 0 504 288 86 65 chr6 98724214 98724313 -83690929 - MLT1J LTR MaLR -2 509 414 2263 81 3 0 chr6 98724313 98724617 -83690625 + AluSx SINE Alu 1 305 0 504 288 86 65 chr6 98724617 98724902 -83690340 - MLT1J LTR MaLR -97 414 116 621 298 33 29 chr6 98725130 98725378 -83689864 - MIR SINE MIR -6 256 8 1968 88 0 63 chr6 98728024 98728309 -83686933 + AluSq SINE Alu 28 294 -19 268 190 17 17 chr6 98728533 98728591 -83686651 - L2 LINE L2 -74 3239 3182 * 835 275 112 22 chr6 98728586 98728953 -83686289 - L2 LINE L2 -401 2913 2514 281 213 120 13 chr6 98729282 98729357 -83685885 + MIR3 SINE MIR 119 201 -7 2032 134 10 0 chr6 98730100 98730399 -83684843 + AluSx SINE Alu 1 302 -10 250 278 78 11 chr6 98731106 98731196 -83684046 - MIR3 SINE MIR -5 203 108 2366 109 0 0 chr6 98731338 98731640 -83683602 - AluSx SINE Alu -10 302 1 2078 207 73 69 chr6 98732567 98733118 -83682124 - MLT2B3 LTR ERVL -1 553 1 3455 190 30 29 chr6 98734151 98734937 -83680305 - L1ME1 LINE L1 -5 6161 5375 281 229 144 68 chr6 98735042 98735160 -83680082 - MER5A DNA MER1_type 0 189 63 838 136 8 8 chr6 98735160 98735292 -83679950 - AluJo SINE Alu -176 136 5 183 206 0 0 chr6 98735330 98735364 -83679878 + MER5A DNA MER1_type 153 186 -3 1532 171 29 14 chr6 98735475 98735750 -83679492 + MER1B DNA MER1_type 57 335 -4 182 355 0 0 chr6 98737611 98737673 -83677569 - MIR3 SINE MIR -19 189 128 856 205 24 38 chr6 98738045 98738255 -83676987 - L1MC4 LINE L1 -5 8037 7831 347 241 108 30 chr6 98738264 98738430 -83676812 - L1ME4a LINE L1 -16 6105 5927 271 243 81 0 chr6 98738459 98738533 -83676709 + MIR SINE MIR 2 81 -181 1681 210 42 42 chr6 98738533 98738980 -83676262 - MLT1C LTR MaLR 0 467 21 452 214 161 18 chr6 98738998 98739166 -83676076 + MIR SINE MIR 68 259 -3 398 191 45 76 chr6 98739186 98739343 -83675899 - L1ME4a LINE L1 -338 5783 5632 1492 184 86 4 chr6 98739380 98739658 -83675584 + AluJb SINE Alu 1 301 -11 1993 134 20 13 chr6 98740316 98740495 -83674747 - AluSx SINE Alu -4 308 125 387 0 0 0 chr6 98740495 98740538 -83674704 + (TG)n Simple_repeat Simple_repeat 2 44 0 1993 134 20 13 chr6 98740538 98740664 -83674578 - AluSx SINE Alu -187 125 1 193 225 14 99 chr6 98741439 98741510 -83673732 + MIR SINE MIR 116 180 -82 1245 168 0 69 chr6 98741870 98742335 -83672907 - MLT1D LTR MaLR 0 505 6 382 278 46 0 chr6 98742338 98742446 -83672796 + L2 LINE L2 3200 3312 -1 2172 116 0 0 chr6 98743298 98743590 -83671652 + AluSx SINE Alu 1 292 -20 324 0 0 0 chr6 98744187 98744223 -83671019 + (CA)n Simple_repeat Simple_repeat 2 37 0 1297 172 44 78 chr6 98744417 98744713 -83670529 + AluJb SINE Alu 21 306 -6 1770 177 41 33 chr6 98745121 98745483 -83669759 + MLT1A1 LTR MaLR 1 365 0 434 335 55 0 chr6 98745904 98746068 -83669174 + MIR SINE MIR 90 262 0 229 241 202 40 chr6 98747371 98747544 -83667698 + MIR SINE MIR 5 197 -45 211 235 59 0 chr6 98748419 98748487 -83666755 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 23 0 0 0 chr6 98748591 98748614 -83666628 + AT_rich Low_complexity Low_complexity 1 23 0 290 169 14 128 chr6 98748705 98748820 -83666422 - MIR SINE MIR -56 206 109 384 244 63 62 chr6 98749217 98749380 -83665862 - MER39 LTR ERV1 -353 354 1 2320 119 23 52 chr6 98749497 98749883 -83665359 + THE1C LTR MaLR 1 375 0 367 339 63 11 chr6 98750268 98750457 -83664785 + MIR SINE MIR 47 245 -17 368 214 155 0 chr6 98750859 98750943 -83664299 + MER5A DNA MER1_type 13 109 -80 341 131 66 0 chr6 98751296 98751357 -83663885 - MER39 LTR ERV1 -353 354 290 252 0 0 0 chr6 98751444 98751472 -83663770 + (CA)n Simple_repeat Simple_repeat 1 28 0 560 331 102 21 chr6 98751475 98751807 -83663435 + L2 LINE L2 2906 3264 -8 21 57 0 0 chr6 98752630 98752665 -83662577 + AT_rich Low_complexity Low_complexity 1 35 0 2383 126 6 30 chr6 98753048 98753413 -83661829 + THE1B LTR MaLR 1 356 -8 627 122 0 47 chr6 98753474 98753581 -83661661 + FRAM SINE Alu 72 173 -3 2272 163 72 54 chr6 98753609 98754187 -83661055 + LTR8A LTR ERV1 68 727 0 496 252 163 0 chr6 98754318 98754461 -83660781 + MLT1G1 LTR MaLR 8 174 -421 2771 147 17 9 chr6 98754461 98755003 -83660239 - MER41B LTR ERV1 0 554 1 1120 221 64 1 chr6 98755030 98755456 -83659786 + LTR54 LTR ERV1 1 403 0 959 239 104 48 chr6 98755459 98755832 -83659410 + MLT1G LTR MaLR 122 580 -10 2125 172 34 5 chr6 98755931 98756314 -83658928 - L1MB3 LINE L1 -9 6174 5781 499 143 13 0 chr6 98756315 98756392 -83658850 - AluJ/FLAM SINE Alu -233 79 2 2517 169 19 27 chr6 98756394 98756880 -83658362 - L1MB3 LINE L1 -405 5778 5297 216 0 0 0 chr6 98758151 98758175 -83657067 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 800 219 0 0 chr6 98758175 98758321 -83656921 - FRAM SINE Alu -30 146 1 2124 116 0 3 chr6 98758354 98758671 -83656571 + AluSg SINE Alu 1 316 0 857 136 14 7 chr6 98758758 98758905 -83656337 + L1MB3 LINE L1 6028 6175 -8 756 143 11 1 chr6 98759306 98759438 -83655804 - MSTC LTR MaLR 0 428 231 286 321 66 19 chr6 98759485 98759591 -83655651 - L2 LINE L2 -6 3266 3156 498 286 14 7 chr6 98759694 98759841 -83655401 - MIR SINE MIR -40 222 75 286 294 235 0 chr6 98759869 98759988 -83655254 - L2 LINE L2 0 3272 3126 324 335 135 41 chr6 98760224 98760399 -83654843 - L2 LINE L2 -1 3271 3114 3622 162 7 11 chr6 98760399 98761016 -83654226 + L1MB5 LINE L1 5561 6174 0 324 335 135 41 chr6 98761016 98761316 -83653926 - L2 LINE L2 -158 3114 2653 340 309 21 0 chr6 98762377 98762471 -83652771 + MIR SINE MIR 29 124 -138 607 160 44 122 chr6 98762474 98762558 -83652684 - MER39 LTR ERV1 -1 706 642 1905 141 0 3 chr6 98762558 98762849 -83652393 + AluJb SINE Alu 1 290 -22 607 160 44 122 chr6 98762849 98762945 -83652297 - MER39 LTR ERV1 -65 642 540 602 192 232 46 chr6 98762969 98763120 -83652122 + Tigger7 DNA MER2_type 32 210 -495 * 1410 169 49 0 chr6 98763116 98763383 -83651859 + Tigger7 DNA MER2_type 2304 2583 -4 724 239 53 46 chr6 98763393 98763738 -83651504 - MER39 LTR ERV1 -199 508 1 427 226 39 0 chr6 98763738 98763840 -83651402 + MIR SINE MIR 123 228 -34 303 313 162 34 chr6 98765123 98765481 -83649761 - MLT1L LTR MaLR -4 611 208 1203 226 119 87 chr6 98766167 98766605 -83648637 + HAL1 LINE L1 1623 2094 -413 1803 181 92 12 chr6 98766605 98766941 -83648301 - MLT1A1 LTR MaLR -2 363 1 1203 226 119 87 chr6 98766941 98767224 -83648018 + HAL1 LINE L1 2094 2367 -140 339 141 70 0 chr6 98767256 98767327 -83647915 + HAL1 LINE L1 2292 2367 -140 2409 65 0 19 chr6 98768383 98768690 -83646552 - AluY SINE Alu -10 301 1 220 254 0 17 chr6 98768841 98768900 -83646342 + (TA)n Simple_repeat Simple_repeat 1 58 0 1875 162 10 0 chr6 98769146 98769466 -83645776 + AluJb SINE Alu 1 312 0 284 234 73 107 chr6 98770969 98771174 -83644068 - L1ME LINE L1 -335 5786 5589 244 170 53 21 chr6 98771209 98771303 -83643939 + (TATAA)n Simple_repeat Simple_repeat 3 99 0 3309 203 72 32 chr6 98771305 98771919 -83643323 + L1ME1 LINE L1 4383 4971 -1195 434 62 231 0 chr6 98771919 98771984 -83643258 - MADE1 DNA Mariner 0 80 1 3309 203 72 32 chr6 98771984 98773066 -83642176 + L1ME1 LINE L1 4971 6157 -9 431 321 144 46 chr6 98773274 98773844 -83641398 - L1 LINE L1 -1679 4649 4024 279 261 142 0 chr6 98774010 98774144 -83641098 - L1PA8A LINE L1 -303 5828 5676 517 138 0 0 chr6 98774147 98774227 -83641015 - MADE1 DNA Mariner 0 80 1 2823 166 43 0 chr6 98774251 98774874 -83640368 - L1M1 LINE L1 -513 5787 5137 1121 173 4 126 chr6 98774886 98775164 -83640078 - AluSx SINE Alu -66 246 3 5677 158 111 17 chr6 98775165 98776531 -83638711 - L1 LINE L1 -4065 1263 2 196 297 123 23 chr6 98777185 98777343 -83637899 + MIR SINE MIR 26 256 -6 475 261 64 27 chr6 98777748 98777936 -83637306 + MLT1J LTR MaLR 1 195 -316 278 123 206 14 chr6 98778004 98778077 -83637165 + MLT1J LTR MaLR 416 502 -9 703 270 9 17 chr6 98779419 98779649 -83635593 + L1ME1 LINE L1 5892 6119 -47 220 193 70 35 chr6 98780113 98780170 -83635072 + MIR SINE MIR 90 148 -114 21 36 0 0 chr6 98785521 98785549 -83629693 + AT_rich Low_complexity Low_complexity 1 28 0 210 91 0 0 chr6 98787482 98787515 -83627727 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 213 350 0 0 chr6 98787571 98787651 -83627591 + MIR SINE MIR 182 261 -1 276 30 0 0 chr6 98788362 98788395 -83626847 + (TG)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr6 98789832 98789857 -83625385 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr6 98790036 98790061 -83625181 + AT_rich Low_complexity Low_complexity 1 25 0 429 288 68 79 chr6 98791082 98791450 -83623792 + L1MEc LINE L1 199 562 -5643 388 258 99 7 chr6 98791598 98791742 -83623500 + L1MEc LINE L1 1540 1752 -824 418 253 126 19 chr6 98792166 98792435 -83622807 + L1MEc LINE L1 2201 2498 -3717 715 168 46 0 chr6 98792465 98792596 -83622646 - AluJo SINE Alu -175 137 1 1737 179 3 0 chr6 98792683 98792974 -83622268 - AluJo SINE Alu -20 292 1 1178 194 28 0 chr6 98793039 98793250 -83621992 - AluJo SINE Alu -95 217 1 619 280 121 8 chr6 98793372 98793761 -83621481 + L1MEc LINE L1 2727 3159 -3056 364 266 84 102 chr6 98793873 98794336 -83620906 + L1MEc LINE L1 3583 4037 -2178 1762 167 0 13 chr6 98794360 98794672 -83620570 - AluJo SINE Alu -2 310 3 2841 6 0 0 chr6 98794974 98795285 -83619957 - AluY SINE Alu 0 311 1 1204 62 25 0 chr6 98795723 98795884 -83619358 - L1MA2 LINE L1 0 6304 6140 423 270 70 0 chr6 98796485 98796600 -83618642 + MIR SINE MIR 30 152 -110 367 291 121 33 chr6 98796604 98796786 -83618456 + MIR SINE MIR 12 209 -53 286 349 32 32 chr6 98796881 98797007 -83618235 + L2 LINE L2 3183 3308 -5 23 0 0 0 chr6 98798535 98798558 -83616684 + AT_rich Low_complexity Low_complexity 1 23 0 1969 142 3 10 chr6 98798778 98799087 -83616155 + AluSx SINE Alu 1 307 -5 356 246 45 36 chr6 98799517 98799627 -83615615 - MIR SINE MIR -86 176 66 336 290 74 69 chr6 98800075 98800306 -83614936 + MIR SINE MIR 31 262 0 2204 222 71 29 chr6 98800384 98800973 -83614269 - MER90 LTR ERV1 0 614 1 212 261 0 0 chr6 98803653 98803699 -83611543 + A-rich Low_complexity Low_complexity 4 49 0 25 31 0 0 chr6 98804166 98804198 -83611044 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr6 98809328 98809351 -83605891 + AT_rich Low_complexity Low_complexity 1 23 0 264 322 148 43 chr6 98809687 98809853 -83605389 + MIR3 SINE MIR 15 192 -67 708 202 0 0 chr6 98809895 98810024 -83605218 - MER20 DNA MER1_type 0 219 91 258 206 11 211 chr6 98810532 98810707 -83604535 - L2 LINE L2 -1 3312 3173 640 264 93 68 chr6 98812797 98813294 -83601948 + MLT1J LTR MaLR 1 509 -2 436 187 148 13 chr6 98813472 98813627 -83601615 + L1ME4a LINE L1 5938 6113 -8 28 48 0 0 chr6 98813835 98813877 -83601365 + AT_rich Low_complexity Low_complexity 1 42 0 3284 253 226 9 chr6 98815501 98816796 -83598446 - L2 LINE L2 -845 2469 894 273 159 63 151 chr6 98818779 98818905 -83596337 - MIR3 SINE MIR -1 207 92 804 243 37 11 chr6 98819945 98820134 -83595108 + MIR SINE MIR 18 211 -51 1376 169 123 4 chr6 98821054 98821314 -83593928 - AluJo SINE Alu -21 291 1 21 36 0 0 chr6 98821868 98821896 -83593346 + AT_rich Low_complexity Low_complexity 1 28 0 2394 64 0 0 chr6 98822366 98822662 -83592580 - AluY SINE Alu -15 296 1 2985 192 38 48 chr6 98822742 98823402 -83591840 + MER82 DNA MER2_type 1 653 0 2319 89 0 0 chr6 98825148 98825440 -83589802 + AluY SINE Alu 1 292 -19 33 0 0 0 chr6 98825440 98825473 -83589769 + AT_rich Low_complexity Low_complexity 1 33 0 221 323 16 0 chr6 98826812 98826874 -83588368 - L2 LINE L2 -50 3222 3160 2381 97 0 0 chr6 98827458 98827767 -83587475 - AluSc SINE Alu 0 309 1 22 35 0 0 chr6 98828151 98828180 -83587062 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 98828665 98828696 -83586546 + AT_rich Low_complexity Low_complexity 1 31 0 193 239 0 22 chr6 98828824 98828870 -83586372 - MIR3 SINE MIR -32 176 132 40655 67 7 3 chr6 98829212 98835328 -83579914 + L1PA5 LINE L1 4 6148 -6 22 70 0 0 chr6 98835540 98835583 -83579659 + AT_rich Low_complexity Low_complexity 1 43 0 364 326 74 47 chr6 98835832 98836022 -83579220 - L2 LINE L2 -6 3266 3072 340 271 135 46 chr6 98836166 98836363 -83578879 - MIR SINE MIR -27 235 18 199 349 53 23 chr6 98836406 98836538 -83578704 + L2 LINE L2 2553 2688 -626 1549 187 29 4 chr6 98836584 98836879 -83578363 - AluJb SINE Alu 0 305 4 227 175 35 18 chr6 98836937 98836994 -83578248 + CT-rich Low_complexity Low_complexity 5 62 0 25 65 0 0 chr6 98837128 98837174 -83578068 + AT_rich Low_complexity Low_complexity 1 46 0 1114 293 89 20 chr6 98837203 98837661 -83577581 + HAL1 LINE L1 14 503 -2004 574 367 34 20 chr6 98837820 98838117 -83577125 - L3 LINE CR1 -808 769 469 21 0 0 0 chr6 98838509 98838530 -83576712 + AT_rich Low_complexity Low_complexity 1 21 0 199 0 65 0 chr6 98838922 98838953 -83576289 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr6 98839015 98839037 -83576205 + AT_rich Low_complexity Low_complexity 1 22 0 1206 226 83 39 chr6 98839408 98839815 -83575427 + L1MB7 LINE L1 5759 6183 -1 212 224 0 105 chr6 98839978 98840054 -83575188 - L3 LINE CR1 -1 1576 1509 622 280 81 0 chr6 98840108 98840319 -83574923 - MIR SINE MIR -5 257 30 517 224 213 38 chr6 98840659 98840842 -83574400 - MIR SINE MIR -3 259 45 258 271 110 59 chr6 98841122 98841240 -83574002 + MIR SINE MIR 20 143 -119 809 176 0 22 chr6 98841380 98841516 -83573726 - FLAM_C SINE Alu 0 133 1 237 323 56 99 chr6 98842942 98843264 -83571978 - L2 LINE L2 -1 3312 3005 2060 71 0 0 chr6 98843275 98843527 -83571715 + AluY SINE Alu 27 278 -33 468 0 0 0 chr6 98843527 98843579 -83571663 + (CA)n Simple_repeat Simple_repeat 1 52 0 1572 306 97 36 chr6 98843651 98844770 -83570472 - L2 LINE L2 -25 3288 1987 783 222 105 0 chr6 98844798 98844969 -83570273 + MER5A DNA MER1_type 1 189 0 1943 132 0 7 chr6 98845368 98845682 -83569560 - AluSx SINE Alu 0 312 1 307 328 25 17 chr6 98846054 98846173 -83569069 - MIR SINE MIR -82 180 61 328 292 234 19 chr6 98846471 98846728 -83568514 + L2 LINE L2 2065 2376 -938 342 200 50 0 chr6 98846729 98846809 -83568433 + Charlie7 DNA MER1_type 298 381 -2231 852 135 7 28 chr6 98847586 98847727 -83567515 - FLAM_C SINE Alu -5 138 1 22 35 0 0 chr6 98848082 98848111 -83567131 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 98848339 98848369 -83566873 + AT_rich Low_complexity Low_complexity 1 30 0 454 228 370 21 chr6 98849458 98849739 -83565503 - L2 LINE L2 0 3313 2935 2057 142 0 0 chr6 98849988 98850290 -83564952 - AluSx SINE Alu -10 302 1 261 323 55 16 chr6 98850456 98850583 -83564659 + MIR SINE MIR 13 144 -118 456 314 74 11 chr6 98850717 98850892 -83564350 - MIR3 SINE MIR -18 190 5 242 267 0 17 chr6 98852103 98852163 -83563079 + MIR SINE MIR 79 137 -71 * 514 291 70 26 chr6 98852153 98852380 -83562862 - MIR SINE MIR -25 237 1 264 343 0 0 chr6 98853095 98853165 -83562077 - L2 LINE L2 0 3272 3203 2858 13 0 0 chr6 98853198 98853510 -83561732 + AluYb8 SINE Alu 1 312 -6 276 325 140 37 chr6 98855316 98855587 -83559655 + L2 LINE L2 2153 2451 -863 310 248 59 20 chr6 98855964 98856065 -83559177 - L1MC4 LINE L1 -15 8027 7923 345 297 14 54 chr6 98856330 98856478 -83558764 + MLT1K LTR MaLR 445 586 -2 725 179 90 25 chr6 98857074 98857291 -83557951 - MER106B DNA MER1_type -1 1058 1 6876 107 48 53 chr6 98857447 98858684 -83556558 + Tigger3b DNA MER2_type 1 1231 0 2621 214 40 2 chr6 98858864 98859391 -83555851 + MLT2B3 LTR ERVL 1 547 -7 24 32 0 0 chr6 98860169 98860200 -83555042 + AT_rich Low_complexity Low_complexity 1 31 0 2361 99 0 0 chr6 98860425 98860737 -83554505 - AluSx SINE Alu 0 312 1 521 287 146 73 chr6 98860779 98861415 -83553827 - L2 LINE L2 -673 2641 1927 2496 62 0 0 chr6 98861415 98861721 -83553521 + AluY SINE Alu 1 306 -5 521 287 146 73 chr6 98861721 98861924 -83553318 - L2 LINE L2 -1387 1927 1740 360 308 107 34 chr6 98861943 98862297 -83552945 - L2 LINE L2 -2235 1079 700 200 308 315 0 chr6 98862520 98862650 -83552592 + MIR SINE MIR 18 188 -74 227 262 0 0 chr6 98862888 98862930 -83552312 + Zaphod DNA AcHobo 17 58 -3973 790 258 18 23 chr6 98863046 98863384 -83551858 + MER115 DNA AcHobo 300 693 0 623 160 0 10 chr6 98865727 98865877 -83549365 + AluJ SINE Alu 88 284 -28 1208 206 99 0 chr6 98866221 98866464 -83548778 + Tigger7 DNA MER2_type 1 267 -466 552 168 42 0 chr6 98866462 98866557 -83548685 + Tigger7 DNA MER2_type 2393 2491 0 * 402 347 28 36 chr6 98868440 98868688 -83546554 + LTR16C LTR ERVL 1 246 -245 321 239 34 120 chr6 98869235 98869352 -83545890 - L2 LINE L2 -8 3305 3199 1077 320 70 24 chr6 98870230 98870686 -83544556 + MLT1K LTR MaLR 44 520 -68 262 266 149 21 chr6 98870971 98871065 -83544177 - L2 LINE L2 -18 3295 3190 664 312 82 59 chr6 98871135 98871711 -83543531 + L2 LINE L2 2722 3307 -6 582 220 25 6 chr6 98872733 98872892 -83542350 - L1ME2 LINE L1 -21 6143 5982 2442 67 3 13 chr6 98873525 98873839 -83541403 - AluY SINE Alu 0 311 1 829 279 61 59 chr6 98874081 98874587 -83540655 + Tigger8 DNA MER2_type 63 569 -97 361 298 56 25 chr6 98875203 98875364 -83539878 + L1MC4a LINE L1 5730 5895 -1913 195 69 0 0 chr6 98875377 98875406 -83539836 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 98876382 98876403 -83538839 + AT_rich Low_complexity Low_complexity 1 21 0 3101 99 4 2 chr6 98876542 98877017 -83538225 + L1PA7 LINE L1 4169 4644 -1502 3272 14 0 0 chr6 98877017 98877385 -83537857 + L1PA3 LINE L1 5786 6155 0 6640 57 24 11 chr6 98877483 98878982 -83536260 + L1PA7 LINE L1 4630 6148 -6 356 353 77 19 chr6 98879079 98879235 -83536007 - MIR3 SINE MIR -25 183 19 292 242 16 0 chr6 98881311 98881373 -83533869 - L2 LINE L2 -5 3308 3246 277 233 206 17 chr6 98882402 98882698 -83532544 + L1ME4a LINE L1 5764 6115 -6 293 239 100 15 chr6 98884130 98884260 -83530982 - MIR SINE MIR -63 145 5 24 100 0 0 chr6 98884277 98884357 -83530885 + GC_rich Low_complexity Low_complexity 1 80 0 316 329 100 54 chr6 98884618 98884858 -83530384 - L1M2 LINE L1 -5965 884 634 244 310 124 23 chr6 98885262 98885391 -83529851 - MIR3 SINE MIR -21 187 46 22 0 0 0 chr6 98886003 98886025 -83529217 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr6 98886974 98887003 -83528239 + (TA)n Simple_repeat Simple_repeat 1 29 0 1006 236 40 65 chr6 98887120 98887569 -83527673 - MER39 LTR ERV1 -20 687 250 245 252 84 92 chr6 98887536 98887667 -83527575 - MER39 LTR ERV1 -574 133 4 * 235 343 0 0 chr6 98887990 98888057 -83527185 + L2 LINE L2 3204 3270 -2 474 353 86 13 chr6 98890628 98890931 -83524311 + L2 LINE L2 2518 2842 -472 25 0 0 0 chr6 98893981 98894006 -83521236 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 98894053 98894075 -83521167 + AT_rich Low_complexity Low_complexity 1 22 0 213 245 38 19 chr6 98894137 98894190 -83521052 - MIR3 SINE MIR -35 173 120 518 172 0 0 chr6 98894206 98894299 -83520943 + MER94 DNA DNA 1 93 -41 969 282 24 0 chr6 98894442 98894697 -83520545 - MIR SINE MIR 0 262 2 21929 127 13 79 chr6 98895998 98900533 -83514709 + L1P LINE L1 12 4246 -1900 22 0 0 0 chr6 98900707 98900729 -83514513 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr6 98900952 98900983 -83514259 + AT_rich Low_complexity Low_complexity 1 31 0 24 85 0 0 chr6 98901002 98901061 -83514181 + AT_rich Low_complexity Low_complexity 1 59 0 2346 103 0 0 chr6 98902557 98902868 -83512374 - AluSx SINE Alu -1 311 1 1940 241 103 17 chr6 98902879 98903522 -83511720 - L1MC4a LINE L1 -1856 5952 5255 638 304 64 50 chr6 98903537 98904063 -83511179 - L1MC4a LINE L1 -907 5239 4698 1413 198 18 18 chr6 98904195 98904468 -83510774 - AluJo SINE Alu -28 284 12 321 276 49 68 chr6 98904486 98904649 -83510593 - HAL1b LINE L1 -1100 248 89 375 300 68 78 chr6 98906359 98906856 -83508386 + L2 LINE L2 1444 1935 -1379 438 267 110 11 chr6 98907197 98907388 -83507854 + MER102b DNA MER1_type 101 310 -31 1215 193 8 29 chr6 98908341 98908585 -83506657 - AluJo SINE Alu -73 239 1 199 357 112 10 chr6 98908749 98908847 -83506395 - L2 LINE L2 -21 3292 3185 324 362 88 30 chr6 98909324 98909653 -83505589 - L2 LINE L2 -728 2586 2239 311 349 47 47 chr6 98909943 98910092 -83505150 + MIR3 SINE MIR 33 181 -27 252 350 85 20 chr6 98911988 98912188 -83503054 - MIR SINE MIR -1 261 49 330 338 50 12 chr6 98912460 98912620 -83502622 - L3b LINE CR1 -103 1480 1315 2206 115 6 6 chr6 98913285 98913598 -83501644 - AluSq SINE Alu 0 313 1 22 0 0 0 chr6 98914118 98914140 -83501102 + AT_rich Low_complexity Low_complexity 1 22 0 1556 192 71 3 chr6 98914299 98914663 -83500579 + MLT1B LTR MaLR 2 390 0 2474 71 0 3 chr6 98914894 98915202 -83500040 + AluY SINE Alu 1 307 -4 25 51 0 0 chr6 98915509 98915548 -83499694 + AT_rich Low_complexity Low_complexity 1 39 0 920 190 15 63 chr6 98915719 98915988 -83499254 - MLT2E LTR ERVL 0 628 373 541 188 160 35 chr6 98915991 98916135 -83499107 - MLT2E LTR ERVL -466 162 1 1846 133 11 35 chr6 98916449 98916775 -83498467 + AluSx SINE Alu 3 321 0 211 205 0 0 chr6 98917232 98917271 -83497971 + CT-rich Low_complexity Low_complexity 2 40 0 22 0 0 0 chr6 98918497 98918519 -83496723 + AT_rich Low_complexity Low_complexity 1 22 0 469 229 57 51 chr6 98918708 98918883 -83496359 + MIR SINE MIR 1 176 -86 351 0 0 0 chr6 98919662 98919701 -83495541 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2244 84 3 3 chr6 98919704 98919991 -83495251 - AluSp SINE Alu -26 287 1 2052 118 3 51 chr6 98920151 98920466 -83494776 + AluSq SINE Alu 1 300 -13 241 258 0 45 chr6 98921674 98921763 -83493479 + T-rich Low_complexity Low_complexity 4 88 0 336 305 124 37 chr6 98922445 98922713 -83492529 + L2 LINE L2 2749 3040 -273 929 234 0 0 chr6 98923067 98923255 -83491987 + MER58A DNA MER1_type 1 188 -36 305 272 68 48 chr6 98923276 98923381 -83491861 - MIR SINE MIR -62 146 42 263 331 154 22 chr6 98923438 98923574 -83491668 - L2 LINE L2 -226 3046 2893 1600 236 96 36 chr6 98923765 98924545 -83490697 - Charlie7 DNA MER1_type -72 2540 1714 595 273 92 12 chr6 98924596 98924845 -83490397 - Charlie7 DNA MER1_type -2075 537 269 474 238 48 7 chr6 98924852 98924999 -83490243 - Charlie7 DNA MER1_type -2457 155 3 4700 129 38 22 chr6 98926191 98927043 -83488199 + L1PA16 LINE L1 5284 6148 -18 246 128 0 0 chr6 98927349 98927388 -83487854 + 5S rRNA rRNA 1 39 -82 2071 166 14 6 chr6 98928316 98928678 -83486564 + MLT1A1 LTR MaLR 1 365 0 519 60 0 0 chr6 98928789 98928856 -83486386 + (TA)n Simple_repeat Simple_repeat 2 68 0 294 29 0 0 chr6 98928884 98928919 -83486323 + (TG)n Simple_repeat Simple_repeat 2 36 0 504 343 185 0 chr6 98929036 98929252 -83485990 + MIR SINE MIR 2 257 -5 3017 207 27 8 chr6 98929279 98929918 -83485324 + MER82 DNA MER2_type 2 652 -1 399 93 0 0 chr6 98929928 98929982 -83485260 + MSTD LTR MaLR 2 55 -341 1119 134 0 38 chr6 98929997 98930183 -83485059 - AluSg/x SINE Alu 0 312 134 1778 169 6 30 chr6 98930206 98930543 -83484699 + MSTD LTR MaLR 68 396 0 718 298 168 47 chr6 98930555 98930984 -83484258 - L3 LINE CR1 -96 1481 1001 276 248 29 64 chr6 98931028 98931263 -83483979 + MLT1J2 LTR MaLR 55 325 -125 23 0 0 0 chr6 98931309 98931332 -83483910 + AT_rich Low_complexity Low_complexity 1 23 0 535 323 61 25 chr6 98931379 98931658 -83483584 - L3 LINE CR1 -597 980 692 195 42 0 0 chr6 98931808 98931832 -83483410 + (TTC)n Simple_repeat Simple_repeat 2 25 0 381 270 20 113 chr6 98932120 98932324 -83482918 + MIR SINE MIR 13 197 -65 1792 149 4 4 chr6 98932542 98932651 -83482591 - AluSx SINE Alu 0 408 300 1159 89 6 6 chr6 98932651 98932831 -83482411 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1792 149 4 4 chr6 98932831 98933098 -83482144 - AluSx SINE Alu -107 301 32 552 195 0 17 chr6 98933269 98933387 -83481855 - MER103 DNA DNA -49 117 2 282 319 233 18 chr6 98934126 98934289 -83480953 - MIR SINE MIR -37 225 28 1400 177 30 114 chr6 98934544 98934940 -83480302 - MLT1A2 LTR MaLR -11 363 1 3512 54 5 2 chr6 98937360 98937807 -83477435 - LTR7 LTR ERV1 -2 448 1 2547 62 46 0 chr6 98937807 98938180 -83477062 - HERVH LTR ERV1 0 7713 7324 1249 143 18 5 chr6 98938180 98938397 -83476845 - HERVH LTR ERV1 -1894 5819 5600 3930 147 5 9 chr6 98938398 98939063 -83476179 - HERVH LTR ERV1 -2564 5149 4488 3214 108 6 2 chr6 98939065 98939565 -83475677 - HERVH LTR ERV1 -3720 3993 3492 928 113 7 0 chr6 98939555 98939705 -83475537 - HERVH LTR ERV1 -4423 3290 3140 * 15644 86 40 15 chr6 98939684 98942142 -83473100 - HERVH LTR ERV1 -4718 2995 476 3491 55 0 7 chr6 98942147 98942598 -83472644 - LTR7 LTR ERV1 -2 448 1 207 100 0 0 chr6 98944981 98945011 -83470231 + (TG)n Simple_repeat Simple_repeat 1 30 0 799 312 21 4 chr6 98946197 98946431 -83468811 + MIR SINE MIR 15 252 -10 195 382 10 20 chr6 98946455 98946557 -83468685 + MIR SINE MIR 36 136 -126 1401 127 120 11 chr6 98946768 98947051 -83468191 - MLT1B LTR MaLR -4 386 73 632 144 0 0 chr6 98947164 98947254 -83467988 + AluS SINE Alu 3 92 -221 303 240 49 104 chr6 98947370 98947386 -83467856 - MLT1J2 LTR MaLR -12 438 423 2365 138 6 0 chr6 98947386 98947748 -83467494 + THE1B LTR MaLR 1 364 0 303 240 49 104 chr6 98947748 98947914 -83467328 - MLT1J2 LTR MaLR -27 423 266 1896 182 112 6 chr6 98947945 98948365 -83466877 - MLT1C LTR MaLR -5 451 3 236 339 36 27 chr6 98948435 98948547 -83466695 + MIR SINE MIR 16 128 -80 219 261 29 0 chr6 98948602 98948671 -83466571 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 414 344 38 8 chr6 98948674 98948805 -83466437 - L2 LINE L2 -2 3270 3136 365 281 7 68 chr6 98948824 98948970 -83466272 - L3 LINE CR1 -286 1291 1155 222 137 0 59 chr6 98949292 98949326 -83465916 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 -15 1536 210 3 13 chr6 98949326 98949631 -83465611 + AluJo SINE Alu 1 302 -10 222 137 0 59 chr6 98949631 98949647 -83465595 + (CAAAAA)n Simple_repeat Simple_repeat 38 53 0 305 322 58 56 chr6 98949685 98949870 -83465372 - MIR SINE MIR -70 192 1 222 227 106 45 chr6 98951753 98951819 -83463423 - MER5C DNA MER1_type -249 75 6 30 69 0 0 chr6 98952775 98952833 -83462409 + AT_rich Low_complexity Low_complexity 1 58 0 3444 182 47 3 chr6 98953390 98954077 -83461165 + L1MB3 LINE L1 5450 6166 -17 40 0 0 0 chr6 98954078 98954118 -83461124 + AT_rich Low_complexity Low_complexity 1 40 0 374 276 281 5 chr6 98954136 98954328 -83460914 + MIR SINE MIR 9 253 -9 21 0 0 0 chr6 98954371 98954392 -83460850 + AT_rich Low_complexity Low_complexity 1 21 0 244 340 10 19 chr6 98956719 98956822 -83458420 - MIR SINE MIR -115 147 46 312 311 210 0 chr6 98957165 98957284 -83457958 + MIR3 SINE MIR 31 174 -34 432 300 61 17 chr6 98957533 98957713 -83457529 + L2 LINE L2 2874 3061 -211 239 277 0 15 chr6 98957715 98957780 -83457462 - L2 LINE L2 -5 3308 3245 2143 93 14 0 chr6 98957819 98958120 -83457122 + AluSx SINE Alu 1 305 0 1209 148 30 0 chr6 98958327 98958529 -83456713 - MER3 DNA MER1_type -1 208 1 1734 264 136 14 chr6 98958603 98959550 -83455692 - L2 LINE L2 0 3313 2242 834 173 11 16 chr6 98959830 98960015 -83455227 - MLT1D LTR MaLR -2 503 320 588 245 5 83 chr6 98960017 98960221 -83455021 - MLT1D LTR MaLR -296 209 22 183 100 0 0 chr6 98960534 98960564 -83454678 + (TG)n Simple_repeat Simple_repeat 1 30 0 426 236 41 162 chr6 98960936 98960969 -83454273 + MIR SINE MIR 2 37 -225 2108 134 3 10 chr6 98960969 98961275 -83453967 + AluSx SINE Alu 1 304 -8 426 236 41 162 chr6 98961275 98961512 -83453730 + MIR SINE MIR 37 239 -23 296 240 164 19 chr6 98961468 98961572 -83453670 - L2 LINE L2 -404 2910 2792 * 544 310 67 35 chr6 98961619 98961990 -83453252 - L2 LINE L2 -741 2573 2191 525 165 0 0 chr6 98962298 98962377 -83452865 - AluJb SINE Alu -194 118 40 457 218 84 56 chr6 98962586 98962765 -83452477 + LTR41 LTR ERVL 1 184 -589 559 236 3 123 chr6 98963008 98963301 -83451941 + LTR41 LTR ERVL 515 772 -1 391 286 76 12 chr6 98963301 98963472 -83451770 + L1MC4a LINE L1 744 925 -5194 807 163 11 56 chr6 98963487 98963665 -83451577 + AluJb SINE Alu 120 289 -23 274 230 242 6 chr6 98963666 98963831 -83451411 + L1MC4a LINE L1 933 1136 -4983 401 286 82 54 chr6 98963964 98964577 -83450665 + L1MC4a LINE L1 3781 4375 -1754 309 47 0 0 chr6 98964577 98964620 -83450622 - MADE1 DNA Mariner -37 43 1 401 286 82 54 chr6 98964620 98965217 -83450025 + L1MC4a LINE L1 4375 4501 -1628 2240 114 0 3 chr6 98965217 98965525 -83449717 - AluSx SINE Alu -5 307 1 401 286 82 54 chr6 98965525 98966371 -83448871 + L1MC4a LINE L1 4501 5321 -808 268 315 14 0 chr6 98967585 98967658 -83447584 - MIR3 SINE MIR 0 208 135 21 36 0 0 chr6 98968065 98968093 -83447149 + AT_rich Low_complexity Low_complexity 1 28 0 473 276 71 28 chr6 98968403 98968657 -83446585 - LTR16B LTR ERVL -26 438 174 268 243 14 0 chr6 98969019 98969093 -83446149 - Charlie2 DNA MER1_type -3 2859 2785 306 0 0 0 chr6 98971124 98971158 -83444084 + (TG)n Simple_repeat Simple_repeat 2 35 0 256 64 43 0 chr6 98971229 98971276 -83443966 + (TA)n Simple_repeat Simple_repeat 1 49 0 317 196 22 43 chr6 98971281 98971373 -83443869 - L1MC4 LINE L1 -1339 6703 6614 344 236 22 11 chr6 98971380 98971469 -83443773 - L1MC4 LINE L1 -1339 6703 6614 219 154 0 0 chr6 98971474 98971513 -83443729 + (TA)n Simple_repeat Simple_repeat 2 40 0 431 306 12 19 chr6 98971956 98972116 -83443126 + MIR3 SINE MIR 9 167 -41 500 304 12 67 chr6 98972717 98972970 -83442272 - MIR SINE MIR -12 250 12 234 0 0 0 chr6 98975824 98975850 -83439392 + (A)n Simple_repeat Simple_repeat 1 26 0 187 328 55 31 chr6 98977207 98977335 -83437907 + L3 LINE CR1 643 773 -804 24 0 0 0 chr6 98980281 98980305 -83434937 + AT_rich Low_complexity Low_complexity 1 24 0 454 255 157 37 chr6 98980596 98980812 -83434430 - MIR SINE MIR 0 262 21 520 249 85 34 chr6 98981407 98981584 -83433658 + MER117 DNA MER1_type 1 186 -11 470 196 108 29 chr6 98981679 98981781 -83433461 + MER81 DNA DNA 1 110 -4 532 230 44 22 chr6 98981785 98981920 -83433322 - L1MD2 LINE L1 0 6359 6222 234 0 0 0 chr6 98981976 98982002 -83433240 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 187 300 0 0 chr6 98984135 98984175 -83431067 - MIR SINE MIR -57 151 112 735 205 135 0 chr6 98984626 98984787 -83430455 + MER5A DNA MER1_type 4 189 0 826 241 42 42 chr6 98986381 98986643 -83428599 - MIR SINE MIR 0 262 1 30 0 0 0 chr6 98987442 98987472 -83427770 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr6 98988597 98988621 -83426621 + (T)n Simple_repeat Simple_repeat 1 24 0 184 157 71 129 chr6 98989433 98989503 -83425739 + L2 LINE L2 3240 3305 -8 460 279 97 18 chr6 98989662 98989827 -83425415 + MIR SINE MIR 1 178 -84 23 33 0 0 chr6 98992852 98992882 -83422360 + AT_rich Low_complexity Low_complexity 1 30 0 331 253 271 0 chr6 98993380 98993546 -83421696 - MIR SINE MIR -42 220 10 443 228 0 60 chr6 98994013 98994162 -83421080 + L1MA9 LINE L1 6143 6282 -30 222 309 38 76 chr6 98994165 98994375 -83420867 - L2 LINE L2 -1240 2074 1873 1809 156 40 32 chr6 98994561 98994933 -83420309 + THE1C LTR MaLR 1 375 0 1075 193 39 0 chr6 98995044 98995251 -83419991 - MER20 DNA MER1_type 0 219 5 513 315 63 43 chr6 98995308 98995744 -83419498 + MLT1K LTR MaLR 47 588 0 305 256 87 83 chr6 98996680 98996934 -83418308 - L2 LINE L2 -14 3299 3045 349 314 65 0 chr6 98997533 98997657 -83417585 - MIR3 SINE MIR -1 207 76 363 298 48 0 chr6 98998320 98998444 -83416798 - L2 LINE L2 0 3313 3184 1187 178 35 0 chr6 98998458 98998655 -83416587 - MER20 DNA MER1_type -15 204 1 468 275 6 56 chr6 98998783 98998961 -83416281 - L1ME3A LINE L1 -5 6165 5997 428 212 166 26 chr6 98998978 98999171 -83416071 - L1ME3A LINE L1 -260 5910 5691 3934 177 19 49 chr6 98999186 98999640 -83415602 - L1MB7 LINE L1 -12 6241 5775 2257 103 0 0 chr6 98999640 98999921 -83415321 + AluSx SINE Alu 2 282 -30 3934 177 19 49 chr6 98999921 99000277 -83414965 - L1MB7 LINE L1 -478 5775 5458 1505 68 0 0 chr6 99000277 99000468 -83414774 - L1PA7 LINE L1 0 6154 5964 3934 177 19 49 chr6 99000468 99000560 -83414682 - L1MB7 LINE L1 -795 5458 5365 1535 105 13 0 chr6 99000589 99000818 -83414424 - L1MA5A LINE L1 -10 6287 6056 30644 111 15 61 chr6 99000900 99007355 -83407887 - L1PA7 LINE L1 0 6154 12 10458 231 43 21 chr6 99007368 99009289 -83405953 - L1MB7 LINE L1 -920 5295 3417 1837 198 42 13 chr6 99009289 99009668 -83405574 + MLT1B LTR MaLR 1 390 0 10458 231 43 21 chr6 99009668 99010039 -83405203 - L1MB7 LINE L1 -2798 3417 3055 2270 71 0 0 chr6 99010039 99010345 -83404897 + AluY SINE Alu 1 306 0 10458 231 43 21 chr6 99010345 99011645 -83403597 - L1MB7 LINE L1 -3160 3055 1654 27 29 0 0 chr6 99013016 99013050 -83402192 + AT_rich Low_complexity Low_complexity 1 34 0 528 287 67 24 chr6 99013327 99013581 -83401661 - L1ME3A LINE L1 -232 5938 5674 369 214 61 61 chr6 99013650 99013879 -83401363 - L1ME3A LINE L1 -663 5501 5273 683 261 72 46 chr6 99013971 99014366 -83400876 - L1MC/D LINE L1 -468 5653 5343 218 341 82 12 chr6 99014662 99014832 -83400410 - L2 LINE L2 -181 3091 2910 887 325 77 13 chr6 99015292 99015668 -83399574 - MER115 DNA AcHobo -259 434 35 323 255 144 43 chr6 99016118 99016326 -83398916 - L2 LINE L2 -7 3306 3078 186 260 110 50 chr6 99016484 99016584 -83398658 + L2 LINE L2 3115 3220 -93 786 156 0 22 chr6 99017208 99017343 -83397899 + FLAM_C SINE Alu 1 132 -1 1281 311 144 28 chr6 99017660 99018530 -83396712 - L3 LINE CR1 -106 1471 494 891 237 6 0 chr6 99018530 99018707 -83396535 + MER5B DNA MER1_type 1 178 0 1281 311 144 28 chr6 99018707 99018727 -83396515 - L3 LINE CR1 -1083 494 478 262 298 12 12 chr6 99018865 99018949 -83396293 - L3 LINE CR1 -1089 488 405 482 0 17 0 chr6 99019049 99019107 -83396135 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 635 299 143 47 chr6 99019131 99019925 -83395317 - L2 LINE L2 0 3313 2438 190 209 23 0 chr6 99020099 99020142 -83395100 + MIR SINE MIR 36 79 -129 290 275 22 11 chr6 99020287 99020378 -83394864 + MIR3 SINE MIR 112 203 -5 347 308 87 16 chr6 99020937 99021122 -83394120 + MIR SINE MIR 41 238 -24 379 331 0 16 chr6 99022615 99022736 -83392506 + MIR3 SINE MIR 73 191 -17 196 289 30 133 chr6 99022805 99022868 -83392374 + L2 LINE L2 3165 3233 -80 1958 142 33 10 chr6 99022868 99023170 -83392072 - AluSx SINE Alu -3 309 1 196 289 30 133 chr6 99023170 99023272 -83391970 + L2 LINE L2 3233 3313 0 306 297 195 16 chr6 99023441 99023626 -83391616 + MLT1I LTR MaLR 1 218 -191 239 225 101 34 chr6 99023751 99023840 -83391402 + MLT1I LTR MaLR 305 399 -10 746 279 76 8 chr6 99024415 99024652 -83390590 + MIR SINE MIR 1 253 -9 416 301 120 22 chr6 99027679 99027862 -83387380 - MIR SINE MIR -12 250 50 632 260 54 9 chr6 99028616 99028718 -83386524 + MER106A DNA MER1_type 4 100 -136 2193 167 30 23 chr6 99028718 99029149 -83386093 - Tigger2a DNA MER2_type 0 434 1 632 260 54 9 chr6 99029149 99029269 -83385973 + MER106A DNA MER1_type 100 236 0 702 192 96 28 chr6 99029762 99029939 -83385303 - MER5A DNA MER1_type 0 189 1 317 340 40 20 chr6 99029971 99030121 -83385121 - MER5B DNA MER1_type -24 154 2 2308 105 0 10 chr6 99030703 99031017 -83384225 + AluSq SINE Alu 1 311 -2 622 342 71 0 chr6 99033684 99033924 -83381318 + MIR SINE MIR 6 262 0 308 61 20 0 chr6 99034636 99034685 -83380557 + L1MA9 LINE L1 6253 6302 -10 2229 122 0 6 chr6 99035169 99035481 -83379761 - AluSx SINE Alu 0 312 3 21 0 0 0 chr6 99035642 99035663 -83379579 + AT_rich Low_complexity Low_complexity 1 21 0 576 148 23 0 chr6 99036470 99036591 -83378651 + L1MA9 LINE L1 6003 6135 -165 2044 141 0 0 chr6 99036930 99037220 -83378022 - AluSx SINE Alu -22 290 1 3736 213 43 29 chr6 99037509 99038359 -83376883 - MER21B LTR ERV1 0 863 2 2780 165 4 6 chr6 99038855 99039341 -83375901 + MER31A LTR ERV1 1 485 0 243 317 10 29 chr6 99039362 99039466 -83375776 - MIR3 SINE MIR -93 115 14 772 287 37 0 chr6 99039785 99040001 -83375241 + MIR SINE MIR 39 262 0 479 366 53 28 chr6 99040123 99040443 -83374799 - L3 LINE CR1 -37 1540 1213 226 345 0 35 chr6 99040993 99041106 -83374136 + MIR SINE MIR 141 249 -13 679 285 77 42 chr6 99041261 99041640 -83373602 - L1MC4a LINE L1 -159 5962 5571 1576 183 98 25 chr6 99041644 99042011 -83373231 - MSTD LTR MaLR -2 394 1 419 289 33 33 chr6 99042158 99042400 -83372842 - L1MC4a LINE L1 -638 5526 5285 190 352 210 19 chr6 99042517 99042679 -83372563 + MIR SINE MIR 20 212 -50 620 341 136 34 chr6 99042837 99043336 -83371906 + L3 LINE CR1 998 1547 -30 227 302 0 12 chr6 99043607 99043693 -83371549 + CT-rich Low_complexity Low_complexity 4 88 0 517 263 51 20 chr6 99043902 99044164 -83371078 - L1ME3A LINE L1 -208 5962 5696 1011 73 0 0 chr6 99044210 99044347 -83370895 + AluY SINE Alu 175 311 0 209 333 47 31 chr6 99044537 99044666 -83370576 + L2 LINE L2 2761 2891 -423 736 283 76 0 chr6 99044740 99044938 -83370304 + MIR SINE MIR 5 217 -45 34 42 0 0 chr6 99046264 99046312 -83368930 + AT_rich Low_complexity Low_complexity 1 48 0 1908 93 108 0 chr6 99046981 99047250 -83367992 - AluSx SINE Alu -14 298 1 509 293 8 0 chr6 99049199 99049322 -83365920 - MIR SINE MIR -74 188 65 382 226 109 0 chr6 99049570 99049707 -83365535 - MER103 DNA DNA -14 152 1 490 163 17 99 chr6 99050543 99050715 -83364527 + L1ME4a LINE L1 5961 6118 -3 1899 131 43 38 chr6 99051621 99051994 -83363248 - THE1C LTR MaLR 0 375 1 1975 200 24 15 chr6 99052316 99052726 -83362516 - MLT2D LTR ERVL 0 414 1 1943 128 49 7 chr6 99052988 99053276 -83361966 + AluSx SINE Alu 1 300 -12 1326 198 133 17 chr6 99053430 99053783 -83361459 - MSTD LTR MaLR -2 394 1 1165 168 43 0 chr6 99055513 99055721 -83359521 - MER20 DNA MER1_type -1 218 2 308 51 0 0 chr6 99055933 99055972 -83359270 - MLT2C1 LTR ERVL 0 397 359 308 51 0 0 chr6 99055980 99056019 -83359223 - MADE1 DNA Mariner -41 39 1 2420 165 37 63 chr6 99056118 99056626 -83358616 - MLT2B2 LTR ERVL -20 495 1 1121 240 59 77 chr6 99060483 99060975 -83354267 + Charlie4a DNA MER1_type 26 508 0 226 253 0 96 chr6 99062078 99062161 -83353081 - L2 LINE L2 -19 3294 3220 193 259 24 82 chr6 99062293 99062378 -83352864 + MIR SINE MIR 123 202 -60 304 345 40 52 chr6 99063142 99063470 -83351772 - L2 LINE L2 -835 2479 2156 516 237 107 13 chr6 99063624 99063853 -83351389 - Charlie8 DNA MER1_type -2233 184 19 212 0 36 0 chr6 99064010 99064038 -83351204 + (GA)n Simple_repeat Simple_repeat 2 30 0 260 167 0 74 chr6 99065307 99065361 -83349881 + L2 LINE L2 3262 3311 -2 1088 179 85 5 chr6 99065451 99065663 -83349579 + MER30 DNA MER1_type 2 230 0 2373 168 17 2 chr6 99066350 99066772 -83348470 - MSTA LTR MaLR 0 428 1 1225 188 29 0 chr6 99067512 99067719 -83347523 + MER20 DNA MER1_type 2 214 -5 431 288 79 74 chr6 99067944 99068159 -83347083 - L2 LINE L2 0 3272 3057 290 297 135 20 chr6 99068865 99069013 -83346229 - L2 LINE L2 -212 3060 2896 285 301 64 113 chr6 99069044 99069247 -83345995 - L2 LINE L2 -524 2790 2598 264 314 101 31 chr6 99070225 99070384 -83344858 + MIR SINE MIR 43 212 -50 186 43 0 0 chr6 99071486 99071509 -83343733 + (A)n Simple_repeat Simple_repeat 1 23 0 890 41 91 0 chr6 99073755 99073876 -83341366 - L1PA8 LINE L1 -2 6170 6039 319 263 68 8 chr6 99074029 99074147 -83341095 - L1M4c LINE L1 -4678 1706 1582 33 56 0 0 chr6 99074554 99074608 -83340634 + AT_rich Low_complexity Low_complexity 1 54 0 28 0 0 0 chr6 99075551 99075579 -83339663 + AT_rich Low_complexity Low_complexity 1 28 0 1845 163 10 0 chr6 99075764 99076071 -83339171 + AluSx SINE Alu 1 310 -2 1668 192 7 7 chr6 99076657 99076959 -83338283 - MLT1B LTR MaLR 0 390 89 180 0 0 0 chr6 99077269 99077289 -83337953 + (CAA)n Simple_repeat Simple_repeat 2 21 0 420 301 123 0 chr6 99080120 99080266 -83334976 - MIR3 SINE MIR 0 208 45 288 264 77 0 chr6 99080269 99080360 -83334882 - L2 LINE L2 -2 3270 3173 9533 134 11 4 chr6 99080429 99082764 -83332478 - L1PA11 LINE L1 0 6174 3818 254 291 18 55 chr6 99083374 99083484 -83331758 - MIR SINE MIR -51 211 106 832 187 51 93 chr6 99083852 99084109 -83331133 + MIR SINE MIR 8 253 -9 23 86 0 0 chr6 99084274 99084332 -83330910 + AT_rich Low_complexity Low_complexity 1 58 0 4226 159 25 3 chr6 99084466 99085229 -83330013 - L1MA4 LINE L1 0 6300 5521 243 0 0 0 chr6 99085348 99085375 -83329867 + (T)n Simple_repeat Simple_repeat 1 27 0 201 365 56 16 chr6 99085752 99085878 -83329364 + L2 LINE L2 3179 3309 -4 207 0 0 0 chr6 99086206 99086229 -83329013 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 275 298 120 32 chr6 99087273 99087431 -83327811 + L2 LINE L2 3142 3313 0 994 263 44 0 chr6 99087547 99087798 -83327444 + MIR SINE MIR 1 262 0 23 0 0 0 chr6 99089223 99089246 -83325996 + AT_rich Low_complexity Low_complexity 1 23 0 1460 300 24 6 chr6 99090436 99091018 -83324224 - L1ME3A LINE L1 -286 5884 5294 4519 173 40 18 chr6 99091031 99092070 -83323172 - L1MB4 LINE L1 -4 6176 5118 241 293 31 68 chr6 99092047 99092324 -83322918 - L1ME3A LINE L1 -816 5330 5044 * 2272 132 24 16 chr6 99092324 99092696 -83322546 + THE1C LTR MaLR 1 375 0 8768 113 107 21 chr6 99092696 99094151 -83321091 + THE1C-int LTR MaLR 1 1580 0 2405 133 11 16 chr6 99094151 99094528 -83320714 + THE1C LTR MaLR 1 375 0 241 293 31 68 chr6 99094528 99094599 -83320643 - L1ME3A LINE L1 -1099 5047 4993 1755 154 40 17 chr6 99095620 99095919 -83319323 - AluSx SINE Alu -6 306 1 315 239 34 11 chr6 99097253 99097341 -83317901 + L1MC4 LINE L1 6614 6703 -1339 * 392 293 32 8 chr6 99097280 99097403 -83317839 - L1MC4 LINE L1 -1346 6696 6571 292 310 110 0 chr6 99098830 99098930 -83316312 - L2 LINE L2 -2 3270 3160 209 328 0 0 chr6 99099213 99099271 -83315971 - MIR SINE MIR -19 243 186 195 42 0 0 chr6 99099825 99099849 -83315393 + (A)n Simple_repeat Simple_repeat 1 24 0 866 170 22 0 chr6 99100468 99100603 -83314639 - MER45A DNA AcHobo 0 178 41 359 399 50 10 chr6 99102028 99102331 -83312911 + L2 LINE L2 2525 2839 -475 205 303 202 0 chr6 99102583 99102682 -83312560 - L2 LINE L2 -4 3309 3191 532 280 69 30 chr6 99102883 99103115 -83312127 + MIR SINE MIR 21 261 -1 374 257 35 76 chr6 99103137 99103308 -83311934 + MIR SINE MIR 80 243 -19 257 281 94 55 chr6 99103506 99103634 -83311608 - L2 LINE L2 -299 2973 2841 622 228 164 41 chr6 99103648 99103867 -83311375 - MER45C DNA AcHobo -2 951 706 690 293 206 16 chr6 99103871 99104124 -83311118 - MER45C DNA AcHobo -564 389 89 24 0 0 0 chr6 99104241 99104265 -83310977 + AT_rich Low_complexity Low_complexity 1 24 0 31 68 0 0 chr6 99104403 99104462 -83310780 + AT_rich Low_complexity Low_complexity 1 59 0 25 0 0 0 chr6 99104608 99104633 -83310609 + AT_rich Low_complexity Low_complexity 1 25 0 1857 198 133 15 chr6 99104645 99105044 -83310198 + MLT2B1 LTR ERVL 1 446 -74 21 0 0 0 chr6 99105049 99105070 -83310172 + AT_rich Low_complexity Low_complexity 1 21 0 338 86 9 26 chr6 99105186 99105202 -83310040 + MLT2B2 LTR ERVL 455 470 -45 2022 136 7 0 chr6 99105202 99105489 -83309753 - AluSx SINE Alu -23 289 1 338 86 9 26 chr6 99105489 99105540 -83309702 + MLT2B2 LTR ERVL 470 513 -2 183 250 50 17 chr6 99105626 99105686 -83309556 - L2 LINE L2 -543 2771 2710 609 331 158 18 chr6 99105804 99106315 -83308927 - L1MEd LINE L1 -2472 3910 3328 265 225 99 9 chr6 99106322 99106433 -83308809 - L1MEd LINE L1 -3123 3259 3139 475 220 24 36 chr6 99106485 99106502 -83308740 - L1MA10 LINE L1 0 6334 6318 1200 191 4 0 chr6 99106502 99106727 -83308515 - L1ME1 LINE L1 -5 6161 5936 651 233 98 35 chr6 99106726 99107073 -83308169 - L1MEd LINE L1 -3319 3063 2695 * 245 302 28 0 chr6 99107140 99107246 -83307996 - L1MEd LINE L1 -3908 2476 2368 374 294 62 28 chr6 99107866 99108077 -83307165 - L1MEd LINE L1 -4894 1478 1261 495 274 98 82 chr6 99108083 99108451 -83306791 - L1MEd LINE L1 -5743 629 256 22 70 0 0 chr6 99108614 99108657 -83306585 + AT_rich Low_complexity Low_complexity 1 43 0 187 343 91 10 chr6 99109242 99109341 -83305901 + L2 LINE L2 3144 3250 -22 2007 174 69 8 chr6 99109341 99109794 -83305448 + MER6A DNA MER2_type 1 581 -24 269 259 19 0 chr6 99110214 99110268 -83304974 - L2 LINE L2 -12 3260 3206 438 282 77 32 chr6 99110755 99110911 -83304331 + MIR SINE MIR 11 173 -89 2199 87 31 7 chr6 99111799 99112087 -83303155 - AluSx SINE Alu -17 295 1 468 51 0 0 chr6 99112627 99112686 -83302556 + (GA)n Simple_repeat Simple_repeat 2 60 0 210 269 16 82 chr6 99113452 99113558 -83301684 + MER5B DNA MER1_type 8 98 -80 272 211 303 0 chr6 99115392 99115468 -83299774 + AluJ/FLAM SINE Alu 1 99 -203 2427 81 0 0 chr6 99115469 99115766 -83299476 + AluSc SINE Alu 1 297 -12 741 189 8 0 chr6 99115766 99115898 -83299344 + AluJo/FRAM SINE Alu 134 266 -46 219 36 0 0 chr6 99115912 99115940 -83299302 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 279 0 0 0 chr6 99116687 99116718 -83298524 + (TG)n Simple_repeat Simple_repeat 2 32 0 356 341 37 0 chr6 99118520 99118655 -83296587 + MIR SINE MIR 2 141 -121 416 273 79 14 chr6 99118702 99118918 -83296324 - L1ME LINE L1 -374 5747 5518 21 71 0 0 chr6 99119040 99119082 -83296160 + AT_rich Low_complexity Low_complexity 1 42 0 374 275 9 0 chr6 99119423 99119532 -83295710 - MER103 DNA DNA -54 112 3 400 300 39 48 chr6 99119815 99120311 -83294931 - L1ME LINE L1 -2309 3837 3343 527 276 212 5 chr6 99120914 99121117 -83294125 - MIR SINE MIR -16 246 2 917 199 16 0 chr6 99122762 99122948 -83292294 - MER5A DNA MER1_type 0 189 1 257 344 62 16 chr6 99123711 99123839 -83291403 - L3b LINE CR1 -153 1430 1297 292 111 16 79 chr6 99124024 99124087 -83291155 - MIR SINE MIR -10 252 194 201 154 0 0 chr6 99125434 99125473 -83289769 + (TATAA)n Simple_repeat Simple_repeat 5 43 0 285 312 146 45 chr6 99125680 99125879 -83289363 - MIR SINE MIR -23 239 21 26 0 0 0 chr6 99126045 99126071 -83289171 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 99126840 99126861 -83288381 + AT_rich Low_complexity Low_complexity 1 21 0 31 76 0 0 chr6 99127443 99127509 -83287733 + AT_rich Low_complexity Low_complexity 1 66 0 775 209 70 30 chr6 99128115 99128316 -83286926 - MER63A DNA MER1_type 0 210 2 1228 237 283 13 chr6 99129239 99129864 -83285378 + LTR50 LTR ERVL 2 795 0 289 258 0 0 chr6 99129907 99129973 -83285269 + L2 LINE L2 3248 3313 0 370 298 37 43 chr6 99131311 99131472 -83283770 + MIR SINE MIR 97 256 -6 1430 258 32 70 chr6 99133245 99133988 -83281254 + L2 LINE L2 2569 3286 -27 602 324 138 44 chr6 99134133 99134551 -83280691 - L2 LINE L2 -516 2798 2316 2031 161 144 40 chr6 99134551 99134702 -83280540 + MLT1C LTR MaLR 1 135 -332 2195 75 8 0 chr6 99134702 99134970 -83280272 - AluSc SINE Alu -13 296 27 2031 161 144 40 chr6 99134970 99135241 -83280001 + MLT1C LTR MaLR 135 467 0 602 324 138 44 chr6 99135241 99135365 -83279877 - L2 LINE L2 -998 2316 2205 2072 109 10 13 chr6 99136166 99136183 -83279059 - AluSq SINE Alu 0 313 297 401 50 17 0 chr6 99136183 99136243 -83278999 + (TA)n Simple_repeat Simple_repeat 1 61 0 2072 109 10 13 chr6 99136243 99136529 -83278713 - AluSq SINE Alu -16 297 11 798 89 0 0 chr6 99136532 99136644 -83278598 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 330 313 75 63 chr6 99136650 99136918 -83278324 - L2 LINE L2 -2807 507 237 242 237 61 79 chr6 99137192 99137306 -83277936 + L1ME LINE L1 5602 5713 -408 1236 248 172 13 chr6 99137431 99137814 -83277428 + MLT1J2 LTR MaLR 7 450 0 520 350 62 10 chr6 99137815 99138215 -83277027 + L2 LINE L2 2078 2498 -816 1644 162 53 14 chr6 99143813 99144097 -83271145 - AluJo SINE Alu -17 295 1 218 348 45 49 chr6 99144857 99145081 -83270161 + L2 LINE L2 2814 3036 -236 214 231 39 0 chr6 99145126 99145178 -83270064 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 14742 200 48 15 chr6 99146654 99147371 -83267871 - L1PB1 LINE L1 -1 6866 6174 2604 60 0 0 chr6 99147371 99147672 -83267570 - AluY SINE Alu -10 301 1 14742 200 48 15 chr6 99147672 99148316 -83266926 - L1PB1 LINE L1 -693 6174 5553 189 0 0 0 chr6 99148316 99148337 -83266905 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 14742 200 48 15 chr6 99148337 99153479 -83261763 - L1PB1 LINE L1 -1314 5553 6 201 39 0 0 chr6 99154980 99155006 -83260236 + (TTA)n Simple_repeat Simple_repeat 2 27 0 270 0 0 0 chr6 99155675 99155705 -83259537 + (T)n Simple_repeat Simple_repeat 1 30 0 276 313 9 18 chr6 99157726 99157838 -83257404 + MLT1H LTR MaLR 432 542 -7 333 0 0 0 chr6 99159053 99159090 -83256152 + (CA)n Simple_repeat Simple_repeat 2 38 0 2492 130 13 19 chr6 99159528 99159904 -83255338 + THE1C LTR MaLR 1 374 -1 2191 152 87 0 chr6 99160135 99160491 -83254751 - MLT1B LTR MaLR -1 389 3 246 390 10 6 chr6 99161228 99161384 -83253858 + MIR3 SINE MIR 12 169 -63 331 232 32 11 chr6 99164734 99164829 -83250413 - MIR SINE MIR -56 206 110 354 230 7 86 chr6 99165340 99165479 -83249763 + HAL1b LINE L1 746 873 -475 281 258 195 38 chr6 99166089 99166248 -83248994 + MIR3 SINE MIR 25 208 0 311 304 190 8 chr6 99167425 99167611 -83247631 - MIR SINE MIR -44 218 3 300 323 26 7 chr6 99168422 99168577 -83246665 + L2 LINE L2 1916 2073 -1241 2230 102 0 34 chr6 99169796 99170120 -83245122 + AluSq SINE Alu 1 313 0 1784 224 59 21 chr6 99170285 99170763 -83244479 + MLT1D LTR MaLR 10 505 0 823 194 163 35 chr6 99170902 99171160 -83244082 - L2 LINE L2 0 3313 3023 2339 111 46 27 chr6 99171246 99171614 -83243628 + THE1C LTR MaLR 1 375 0 15267 155 57 8 chr6 99172835 99175446 -83239796 - L1M1 LINE L1 -4810 2755 19 1511 185 27 17 chr6 99176529 99176826 -83238416 - AluJo SINE Alu -1 311 12 221 321 170 30 chr6 99176879 99177150 -83238092 + L2 LINE L2 3005 3313 0 192 411 9 0 chr6 99179034 99179141 -83236101 + MIR SINE MIR 28 135 -73 545 221 214 13 chr6 99180010 99180168 -83235074 + MER45C DNA AcHobo 765 953 0 183 129 0 0 chr6 99181063 99181094 -83234148 + (T)n Simple_repeat Simple_repeat 1 31 0 1687 142 124 149 chr6 99181553 99181990 -83233252 + THE1C LTR MaLR 1 373 -2 9699 115 55 8 chr6 99181992 99183501 -83231741 + THE1C-int LTR MaLR 1 1580 0 2118 123 15 54 chr6 99183501 99183891 -83231351 + THE1C LTR MaLR 1 375 0 183 218 115 103 chr6 99184701 99184788 -83230454 + MIR3 SINE MIR 119 206 -2 346 293 16 24 chr6 99186660 99186783 -83228459 + L1MEd LINE L1 94 215 -5990 307 409 15 5 chr6 99187106 99187309 -83227933 + L1MEd LINE L1 585 789 -5416 30 27 0 0 chr6 99187400 99187437 -83227805 + AT_rich Low_complexity Low_complexity 1 37 0 404 286 92 10 chr6 99187555 99187751 -83227491 + L1MEd LINE L1 1372 1583 -4813 978 298 114 24 chr6 99188140 99189430 -83225812 + L1MEd LINE L1 2216 3621 -2594 232 347 7 0 chr6 99189644 99189788 -83225454 + L1MCc LINE L1 1301 1445 -4978 705 278 70 25 chr6 99189813 99190210 -83225032 - L1M4 LINE L1 -1922 4224 3817 * 1665 224 39 65 chr6 99190189 99190708 -83224534 - L1M4 LINE L1 -743 5403 4899 208 320 67 13 chr6 99191670 99191745 -83223497 - L2 LINE L2 -78 3194 3116 290 352 64 52 chr6 99193778 99194045 -83221197 - L2 LINE L2 -18 3254 2985 347 301 62 0 chr6 99194164 99194277 -83220965 - L2 LINE L2 -1 3312 3193 375 333 0 19 chr6 99195759 99195915 -83219327 - MLT1K LTR MaLR -119 469 317 1061 161 96 18 chr6 99196828 99197046 -83218196 - MER46A DNA MER2_type -1 235 1 202 100 57 14 chr6 99197770 99197840 -83217402 + (TA)n Simple_repeat Simple_repeat 2 74 0 227 214 0 18 chr6 99197961 99198017 -83217225 + T-rich Low_complexity Low_complexity 2 56 0 359 300 123 18 chr6 99198681 99198851 -83216391 - L2 LINE L2 -5 3308 3121 272 250 315 25 chr6 99200173 99200339 -83214903 - MIR SINE MIR -8 254 43 184 270 14 81 chr6 99201151 99201225 -83214017 + MER5A DNA MER1_type 93 161 -28 256 222 50 40 chr6 99204137 99204236 -83211006 + MIR SINE MIR 75 174 -88 269 289 0 96 chr6 99204775 99204879 -83210363 - MIR SINE MIR -79 183 90 715 218 50 11 chr6 99204912 99205091 -83210151 - MER5A DNA MER1_type -2 187 2 421 223 74 0 chr6 99205862 99205983 -83209259 - MER103 DNA DNA -12 154 25 21 57 0 0 chr6 99207823 99207858 -83207384 + AT_rich Low_complexity Low_complexity 1 35 0 301 294 4 15 chr6 99208017 99208128 -83207114 + MIR SINE MIR 38 146 -62 904 148 7 0 chr6 99210976 99211111 -83204131 - AluJo SINE Alu -176 136 1 245 167 0 0 chr6 99211344 99211386 -83203856 - tRNA-Thr-ACA tRNA tRNA -34 42 1 572 76 13 0 chr6 99212362 99212441 -83202801 - MADE1 DNA Mariner 0 80 1 408 303 91 23 chr6 99212969 99213190 -83202052 - MIR SINE MIR -19 243 8 261 0 0 0 chr6 99213290 99213319 -83201923 + (T)n Simple_repeat Simple_repeat 1 29 0 327 179 0 0 chr6 99213793 99213860 -83201382 + (TA)n Simple_repeat Simple_repeat 2 68 0 5741 207 99 45 chr6 99214423 99216062 -83199180 + MER52A LTR ERV1 28 1755 0 359 61 0 298 chr6 99216465 99216519 -83198723 - MADE1 DNA Mariner 0 80 76 2471 53 30 0 chr6 99216519 99216819 -83198423 + AluY SINE Alu 3 311 0 359 61 0 298 chr6 99216819 99216878 -83198364 - MADE1 DNA Mariner -4 76 1 434 311 120 22 chr6 99217781 99218006 -83197236 + MIR SINE MIR 6 252 -10 45 45 0 0 chr6 99218778 99218844 -83196398 + AT_rich Low_complexity Low_complexity 1 66 0 26 50 0 0 chr6 99218867 99218907 -83196335 + AT_rich Low_complexity Low_complexity 1 40 0 509 242 68 0 chr6 99218968 99219100 -83196142 + MIR SINE MIR 36 176 -86 29 70 0 0 chr6 99219117 99219174 -83196068 + AT_rich Low_complexity Low_complexity 1 57 0 854 298 123 27 chr6 99219259 99220851 -83194391 - L1ME LINE L1 -359 5811 4066 227 143 107 0 chr6 99220912 99220968 -83194274 - L1MB2 LINE L1 -3 6168 6107 * 306 241 65 81 chr6 99220953 99221214 -83194028 - L1ME LINE L1 -2101 4045 3789 206 425 0 9 chr6 99221218 99221331 -83193911 - L2 LINE L2 -308 3005 2894 198 311 0 0 chr6 99223059 99223133 -83192109 - MIR SINE MIR -46 216 143 804 256 123 4 chr6 99223142 99223369 -83191873 + MIR SINE MIR 2 255 -7 316 218 36 82 chr6 99223399 99223509 -83191733 - MIR SINE MIR -122 140 36 26 0 0 0 chr6 99223574 99223600 -83191642 + AT_rich Low_complexity Low_complexity 1 26 0 319 347 185 5 chr6 99224004 99224393 -83190849 + L3 LINE CR1 666 1124 -453 22 0 0 0 chr6 99224774 99224796 -83190446 + AT_rich Low_complexity Low_complexity 1 22 0 439 315 106 13 chr6 99225033 99225403 -83189839 - L1ME4a LINE L1 -290 5831 5421 512 269 102 33 chr6 99225690 99225965 -83189277 + LTR16C LTR ERVL 192 485 -6 2057 122 0 10 chr6 99225968 99226280 -83188962 + AluSq SINE Alu 1 309 0 1908 53 53 0 chr6 99226375 99226638 -83188604 - L1PA13 LINE L1 -19 6144 5868 225 91 0 0 chr6 99226638 99226671 -83188571 + L1PA13 LINE L1 5843 5875 -293 29 60 0 0 chr6 99226791 99226841 -83188401 + AT_rich Low_complexity Low_complexity 1 50 0 3025 267 51 43 chr6 99226877 99228218 -83187024 - L1MEc LINE L1 -5012 1384 34 283 318 45 60 chr6 99228994 99229195 -83186047 - L1ME3A LINE L1 -8 6398 6201 570 271 112 30 chr6 99229251 99229554 -83185688 - L1ME3A LINE L1 -209 6197 5870 564 294 59 50 chr6 99229555 99230084 -83185158 - L1ME3A LINE L1 -710 5696 5157 1499 150 65 71 chr6 99230084 99230378 -83184864 - AluSx SINE Alu -20 292 1 564 294 59 50 chr6 99230378 99230486 -83184756 - L1ME3A LINE L1 -1249 5157 5051 1043 123 0 0 chr6 99230512 99230667 -83184575 - L1MA2 LINE L1 0 6304 6150 359 277 0 0 chr6 99230667 99230761 -83184481 + L1M4 LINE L1 3751 3844 -2302 655 88 2 91 chr6 99230792 99232083 -83183159 + (TA)n Simple_repeat Simple_repeat 1 1175 0 2184 113 11 14 chr6 99232108 99232463 -83182779 - L1MA3 LINE L1 -265 6040 5687 581 304 44 30 chr6 99232462 99232827 -83182415 - L1ME3A LINE L1 -1321 5061 4692 * 1129 284 17 17 chr6 99232911 99233379 -83181863 - L1ME3A LINE L1 -2214 4168 3701 22 0 0 0 chr6 99233379 99233401 -83181841 + AT_rich Low_complexity Low_complexity 1 22 0 818 218 80 11 chr6 99233418 99233606 -83181636 - MLT1B LTR MaLR 0 390 190 326 275 96 45 chr6 99233618 99234007 -83181235 - L1MEc LINE L1 -3685 2697 2322 432 325 33 12 chr6 99234184 99234427 -83180815 - L1MEc LINE L1 -4886 1498 1251 1213 213 40 22 chr6 99234549 99234826 -83180416 - MLT1F1 LTR MaLR -1 566 285 2530 217 83 12 chr6 99234985 99235673 -83179569 + LTR68 LTR ERV1 1 737 -3 180 111 0 0 chr6 99236086 99236113 -83179129 + (T)n Simple_repeat Simple_repeat 1 27 0 391 304 41 26 chr6 99236247 99236441 -83178801 - MLT1F1 LTR MaLR -302 247 51 364 220 66 22 chr6 99236695 99236786 -83178456 + MLT1J2 LTR MaLR 65 159 -291 322 319 101 27 chr6 99236836 99237024 -83178218 + MLT1J2 LTR MaLR 244 445 -5 216 254 0 45 chr6 99237168 99237235 -83178007 + MIR3 SINE MIR 131 194 -14 1478 124 0 30 chr6 99237237 99237470 -83177772 - AluSg/x SINE Alu 0 312 87 626 273 35 0 chr6 99237671 99237843 -83177399 + MIR SINE MIR 85 262 0 23 0 0 0 chr6 99238235 99238258 -83176984 + AT_rich Low_complexity Low_complexity 1 23 0 444 304 16 8 chr6 99241637 99241762 -83173480 + L2 LINE L2 3188 3313 0 458 279 159 75 chr6 99243250 99243395 -83171847 + MLT1J LTR MaLR 1 132 -379 650 148 9 9 chr6 99243395 99243510 -83171732 + L1PA15 LINE L1 6051 6165 0 458 279 159 75 chr6 99243510 99243672 -83171570 + MLT1J LTR MaLR 132 334 -177 1199 188 40 12 chr6 99245085 99245335 -83169907 + MLT1C LTR MaLR 210 466 -1 342 0 0 0 chr6 99246669 99246707 -83168535 + (CA)n Simple_repeat Simple_repeat 2 39 0 2252 232 19 5 chr6 99247922 99248487 -83166755 - L1M4 LINE L1 -1646 4500 3928 1071 285 21 48 chr6 99248473 99248532 -83166710 - L1MDb LINE L1 -5057 1352 1293 * 209 56 0 28 chr6 99248532 99248568 -83166674 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1854 153 4 0 chr6 99248570 99248851 -83166391 - AluJo SINE Alu -30 282 1 1071 285 21 48 chr6 99248851 99249367 -83165875 - L1MDb LINE L1 -5117 1292 790 240 304 0 25 chr6 99250101 99250180 -83165062 + CT-rich Low_complexity Low_complexity 2 78 0 186 103 0 0 chr6 99250195 99250224 -83165018 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 330 314 34 8 chr6 99250360 99250478 -83164764 - MIR3 SINE MIR -79 129 9 673 267 65 4 chr6 99250754 99251001 -83164241 - MLT1C LTR MaLR 0 467 206 287 287 211 0 chr6 99252303 99252430 -83162812 + MIR3 SINE MIR 20 173 -35 313 267 33 11 chr6 99252911 99253001 -83162241 + Charlie7 DNA MER1_type 10 101 -2511 443 240 48 62 chr6 99254655 99254801 -83160441 + MIR SINE MIR 109 252 -10 21 57 0 0 chr6 99255579 99255614 -83159628 + AT_rich Low_complexity Low_complexity 1 35 0 1815 190 73 39 chr6 99258244 99258644 -83156598 - MLT1C LTR MaLR -1 466 49 245 208 38 0 chr6 99258830 99258883 -83156359 - L2 LINE L2 -35 3237 3183 293 212 15 0 chr6 99259211 99259277 -83155965 - Charlie8 DNA MER1_type -2270 147 81 696 160 14 35 chr6 99261104 99261248 -83153994 - L1MD3 LINE L1 -210 7785 7645 655 164 9 9 chr6 99261492 99261608 -83153634 - MLT1A2 LTR MaLR 0 374 259 768 294 63 53 chr6 99261615 99262009 -83153233 - LTR67 LTR ERVL -141 416 19 256 277 10 0 chr6 99262384 99262485 -83152757 - L1M1 LINE L1 -852 5453 5352 2309 77 10 0 chr6 99262507 99262806 -83152436 - AluSc SINE Alu -2 307 6 247 254 143 51 chr6 99262831 99263182 -83152060 - L1M4 LINE L1 -831 5315 4933 332 314 119 31 chr6 99263334 99263595 -83151647 - L1M4 LINE L1 -1386 4760 4477 225 0 0 0 chr6 99264699 99264724 -83150518 + (T)n Simple_repeat Simple_repeat 1 25 0 287 267 44 22 chr6 99265374 99265464 -83149778 + L2 LINE L2 3221 3312 -1 231 358 80 13 chr6 99265706 99265857 -83149385 + MIR SINE MIR 31 191 -71 627 67 0 0 chr6 99265941 99266030 -83149212 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 2049 109 16 22 chr6 99266032 99266345 -83148897 - AluSx SINE Alu -1 311 1 26 0 0 0 chr6 99266400 99266426 -83148816 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr6 99266570 99266596 -83148646 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1709 144 73 28 chr6 99267797 99268152 -83147090 + THE1C LTR MaLR 5 375 0 236 230 14 27 chr6 99268621 99268695 -83146547 - L1MC5 LINE L1 -385 7576 7504 1157 288 56 59 chr6 99268858 99269719 -83145523 - L1MEd LINE L1 -4867 1252 395 815 163 114 45 chr6 99269824 99270026 -83145216 + MER20 DNA MER1_type 1 216 -3 654 274 153 7 chr6 99270239 99270520 -83144722 - L1MC4a LINE L1 -1982 5826 5505 369 256 117 78 chr6 99270577 99271140 -83144102 - L1MC5 LINE L1 -86 7875 7291 238 250 109 71 chr6 99271107 99271291 -83143951 - L1MC4 LINE L1 -547 7495 7305 * 428 246 45 90 chr6 99271307 99271386 -83143856 - L1MC5 LINE L1 -747 7214 7133 2467 63 3 0 chr6 99271386 99271687 -83143555 - AluY SINE Alu -9 302 1 428 246 45 90 chr6 99271687 99271875 -83143367 - L1MC5 LINE L1 -828 7133 6959 681 270 8 4 chr6 99271911 99271967 -83143275 - L1MC4 LINE L1 -974 7068 7014 2311 41 21 0 chr6 99271967 99272132 -83143110 - AluY SINE Alu -15 296 121 405 0 0 0 chr6 99272132 99272177 -83143065 + (TG)n Simple_repeat Simple_repeat 2 46 0 2311 41 21 0 chr6 99272177 99272301 -83142941 - AluY SINE Alu -190 121 1 681 270 8 4 chr6 99272301 99272485 -83142757 - L1MC4 LINE L1 -1028 7014 6827 401 308 150 25 chr6 99272738 99273333 -83141909 - L1MC4a LINE L1 -991 5155 4487 442 306 81 48 chr6 99273500 99273833 -83141409 - MLT1J LTR MaLR -144 367 24 353 294 69 70 chr6 99274045 99274560 -83140682 - L1MC4a LINE L1 -1929 4217 3700 290 280 60 77 chr6 99275364 99275919 -83139323 - HAL1b LINE L1 -569 779 169 5426 171 22 14 chr6 99275932 99277703 -83137539 - L1PA16 LINE L1 -9 6157 4365 369 0 0 0 chr6 99277703 99277744 -83137498 + (TG)n Simple_repeat Simple_repeat 2 42 0 5426 171 22 14 chr6 99277744 99277987 -83137255 - L1PA16 LINE L1 -1801 4365 4125 243 61 0 0 chr6 99278562 99278595 -83136647 + (TG)n Simple_repeat Simple_repeat 1 33 0 264 231 0 0 chr6 99279312 99279364 -83135878 + MIR SINE MIR 205 256 -6 22 35 0 0 chr6 99279425 99279454 -83135788 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 99281228 99281258 -83133984 + AT_rich Low_complexity Low_complexity 1 30 0 289 239 14 0 chr6 99283717 99283788 -83131454 + MIR SINE MIR 121 192 -70 1253 191 110 46 chr6 99284110 99284286 -83130956 - MSTD LTR MaLR 0 396 233 465 34 0 0 chr6 99284286 99284345 -83130897 + (GA)n Simple_repeat Simple_repeat 2 60 0 1253 191 110 46 chr6 99284345 99284540 -83130702 - MSTD LTR MaLR -163 233 1 2255 102 0 3 chr6 99284841 99285136 -83130106 - AluSx SINE Alu -18 294 1 595 228 51 23 chr6 99285405 99285638 -83129604 - MLT1I LTR MaLR -23 386 97 1542 194 12 80 chr6 99285840 99286241 -83129001 - MLT1A2 LTR MaLR 0 374 1 621 280 152 25 chr6 99286795 99287316 -83127926 + L2 LINE L2 2695 3279 -34 541 336 22 47 chr6 99287372 99287646 -83127596 - L3 LINE CR1 -219 1358 1092 232 359 83 44 chr6 99288300 99288481 -83126761 - L3 LINE CR1 -793 784 597 3777 132 49 71 chr6 99288914 99289717 -83125525 + LTR1 LTR ERV1 1 785 0 250 301 68 0 chr6 99290255 99290328 -83124914 - L2 LINE L2 -11 3302 3225 639 214 92 33 chr6 99290769 99291041 -83124201 - MLT1F LTR MaLR -32 510 204 239 162 0 0 chr6 99291038 99291075 -83124167 + MLT1B LTR MaLR 354 390 0 * 231 146 0 0 chr6 99291490 99291531 -83123711 + (CA)n Simple_repeat Simple_repeat 2 42 0 1907 150 52 3 chr6 99291531 99291858 -83123384 - MER2 DNA MER2_type 0 344 2 25 31 0 0 chr6 99292570 99292602 -83122640 + AT_rich Low_complexity Low_complexity 1 32 0 339 65 0 0 chr6 99292811 99292857 -83122385 + (TG)n Simple_repeat Simple_repeat 1 46 0 371 293 122 24 chr6 99293660 99293865 -83121377 - L2 LINE L2 -1 3312 3088 400 333 69 48 chr6 99293994 99294414 -83120828 - L2 LINE L2 -21 3251 2823 684 366 46 30 chr6 99294709 99295271 -83119971 + L2 LINE L2 1707 2277 -1037 206 358 0 0 chr6 99295268 99295349 -83119893 - L2 LINE L2 -1985 1329 1249 * 298 340 158 27 chr6 99295411 99295885 -83119357 - L2 LINE L2 -2197 1117 582 268 250 0 0 chr6 99297721 99297789 -83117453 + A-rich Low_complexity Low_complexity 1 68 0 251 308 179 54 chr6 99298497 99299088 -83116154 + L2 LINE L2 2579 3251 -21 973 220 75 19 chr6 99299490 99299758 -83115484 + LTR37B LTR ERV1 186 468 0 239 157 20 0 chr6 99300858 99300909 -83114333 + CT-rich Low_complexity Low_complexity 1 52 0 180 167 0 0 chr6 99300910 99300940 -83114302 + L2 LINE L2 3265 3294 -19 215 224 20 20 chr6 99301148 99301197 -83114045 - L2 LINE L2 -12 3260 3212 399 286 82 6 chr6 99303697 99303868 -83111374 + MIR SINE MIR 79 262 0 475 224 141 21 chr6 99304250 99304442 -83110800 + MIR SINE MIR 36 250 -12 201 74 0 0 chr6 99304856 99304883 -83110359 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 219 317 127 43 chr6 99305677 99305890 -83109352 - MIR SINE MIR -12 250 22 369 272 16 40 chr6 99306184 99306309 -83108933 - L2 LINE L2 0 3313 3192 923 280 121 27 chr6 99306373 99306777 -83108465 + MLT1J LTR MaLR 59 500 -11 270 202 225 22 chr6 99306919 99307008 -83108234 + MLT1K LTR MaLR 440 546 -42 230 329 37 12 chr6 99307151 99307233 -83108009 - MIR3 SINE MIR -40 168 85 183 184 208 64 chr6 99308337 99308462 -83106780 + L2 LINE L2 3076 3218 -95 341 253 81 0 chr6 99308587 99308674 -83106568 + L1MC4 LINE L1 6610 6703 -1339 482 310 105 0 chr6 99308784 99308955 -83106287 - MIR3 SINE MIR -3 205 17 21 0 0 0 chr6 99309205 99309226 -83106016 + AT_rich Low_complexity Low_complexity 1 21 0 1625 45 0 10 chr6 99309502 99309704 -83105538 + L1PA3 LINE L1 5956 6155 0 438 255 152 7 chr6 99310633 99310778 -83104464 + MIR3 SINE MIR 22 187 -21 235 337 82 10 chr6 99311320 99311418 -83103824 - L2 LINE L2 0 3313 3209 246 331 120 30 chr6 99311660 99311793 -83103449 - L2 LINE L2 -411 2903 2759 368 310 152 18 chr6 99312266 99312437 -83102805 + MIR3 SINE MIR 10 203 -5 2259 57 7 0 chr6 99313063 99313395 -83101847 + AluY SINE Alu 1 334 0 1420 183 41 52 chr6 99314012 99314416 -83100826 - L1ME1 LINE L1 -5 6161 5762 42616 34 22 0 chr6 99314463 99320473 -83094769 - L1PA2 LINE L1 -4 6151 9 2249 248 112 28 chr6 99320508 99322205 -83093037 - L1ME1 LINE L1 -520 5646 3798 * 7670 208 69 11 chr6 99322200 99325222 -83090020 - L1MA4 LINE L1 -267 6215 2857 222 118 0 0 chr6 99325239 99325273 -83089969 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 513 84 0 0 chr6 99325502 99325573 -83089669 + (TCCCC)n Simple_repeat Simple_repeat 5 75 0 436 260 19 13 chr6 99325593 99325747 -83089495 - L1MA4 LINE L1 -4067 2261 2107 185 32 48 63 chr6 99325755 99325818 -83089424 + (TA)n Simple_repeat Simple_repeat 1 62 0 455 254 30 47 chr6 99325832 99326068 -83089174 - L1MA4 LINE L1 -4244 2084 1853 3512 246 34 26 chr6 99326070 99327312 -83087930 - L1MA4 LINE L1 -4107 1221 539 351 322 19 74 chr6 99328174 99328444 -83086798 - L1MA4 LINE L1 -5532 717 463 2776 151 7 9 chr6 99328449 99328887 -83086355 + MER1A DNA MER1_type 1 437 -92 1620 159 16 12 chr6 99328888 99329146 -83086096 - AluJb SINE Alu -53 259 1 796 266 35 49 chr6 99329146 99329698 -83085544 - L1PA12 LINE L1 -4858 1345 792 3442 264 69 8 chr6 99330597 99333162 -83082080 - L1MEc LINE L1 -3390 2825 43 198 376 105 23 chr6 99333258 99333391 -83081851 + L2 LINE L2 3128 3271 -1 394 140 58 6 chr6 99333474 99333645 -83081597 + (TA)n Simple_repeat Simple_repeat 1 180 0 232 185 56 0 chr6 99333655 99333709 -83081533 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 30 45 0 0 chr6 99333999 99334043 -83081199 + AT_rich Low_complexity Low_complexity 1 44 0 1198 214 33 0 chr6 99335299 99335606 -83079636 + MLT1A1 LTR MaLR 1 341 -24 21 0 0 0 chr6 99335700 99335721 -83079521 + AT_rich Low_complexity Low_complexity 1 21 0 1758 282 176 24 chr6 99336367 99337523 -83077719 - L2 LINE L2 -4 3309 1977 2001 136 41 12 chr6 99338311 99338650 -83076592 + THE1C LTR MaLR 1 349 -26 3674 108 10 45 chr6 99338659 99339235 -83076007 + THE1C-int LTR MaLR 1025 1580 0 2129 133 32 16 chr6 99339235 99339604 -83075638 + THE1C LTR MaLR 1 375 0 2353 164 69 42 chr6 99339933 99340439 -83074803 - MLT2B1 LTR ERVL 0 520 1 256 296 31 10 chr6 99340524 99340622 -83074620 + MIR SINE MIR 122 221 -41 584 229 170 0 chr6 99341987 99342140 -83073102 - MER5A DNA MER1_type -1 188 10 183 276 0 0 chr6 99344152 99344228 -83071014 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 472 302 19 7 chr6 99344690 99344860 -83070382 - MIR SINE MIR -31 177 5 350 236 181 70 chr6 99344995 99345369 -83069873 - L2 LINE L2 -124 3189 2754 182 161 66 7 chr6 99345418 99345555 -83069687 + (TA)n Simple_repeat Simple_repeat 1 145 0 22 0 0 0 chr6 99345564 99345586 -83069656 + AT_rich Low_complexity Low_complexity 1 22 0 216 266 127 0 chr6 99346984 99347063 -83068179 + L2 LINE L2 3193 3281 -32 286 316 79 33 chr6 99348662 99348877 -83066365 + MIR SINE MIR 35 259 -3 820 203 6 0 chr6 99349066 99349224 -83066018 - MER5A DNA MER1_type 0 189 31 268 236 18 0 chr6 99349589 99349644 -83065598 + L2 LINE L2 3258 3313 0 188 219 24 0 chr6 99349697 99349738 -83065504 + MIR SINE MIR 64 105 -157 409 205 0 0 chr6 99349818 99349896 -83065346 + MER116 DNA Mariner 1 78 -2 202 205 0 0 chr6 99350329 99350368 -83064874 + CT-rich Low_complexity Low_complexity 1 39 0 868 214 124 0 chr6 99350891 99351121 -83064121 + MIR SINE MIR 5 262 0 2454 58 0 3 chr6 99352724 99353019 -83062223 + AluY SINE Alu 1 294 -17 211 237 144 41 chr6 99353544 99353641 -83061601 - MIR SINE MIR -75 187 81 2028 144 0 0 chr6 99354051 99354356 -83060886 - AluSx SINE Alu -7 305 1 23 68 0 0 chr6 99354356 99354400 -83060842 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 99354619 99354640 -83060602 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 99355076 99355097 -83060145 + AT_rich Low_complexity Low_complexity 1 21 0 266 272 157 27 chr6 99355965 99356112 -83059130 - L2 LINE L2 -856 2458 2293 27 29 0 0 chr6 99356339 99356373 -83058869 + AT_rich Low_complexity Low_complexity 1 34 0 209 156 44 0 chr6 99356494 99356539 -83058703 + CT-rich Low_complexity Low_complexity 2 48 0 234 0 0 0 chr6 99357331 99357357 -83057885 + (T)n Simple_repeat Simple_repeat 1 26 0 398 77 0 0 chr6 99357660 99357712 -83057530 + MSTA LTR MaLR 377 428 0 181 362 39 31 chr6 99357826 99357953 -83057289 + MIR SINE MIR 20 147 -115 408 226 55 62 chr6 99359082 99359201 -83056041 + MLT1B LTR MaLR 1 118 -272 966 75 52 22 chr6 99359201 99359335 -83055907 + THE1C LTR MaLR 3 140 -235 480 238 24 24 chr6 99359665 99359791 -83055451 - MSTA LTR MaLR -302 126 1 2183 100 0 19 chr6 99359856 99360166 -83055076 - AluSg SINE Alu -6 304 1 1921 189 112 13 chr6 99360484 99360938 -83054304 + MLT1D LTR MaLR 3 501 -4 22 0 0 0 chr6 99363168 99363190 -83052052 + AT_rich Low_complexity Low_complexity 1 22 0 562 258 66 59 chr6 99364109 99364537 -83050705 + L2 LINE L2 2786 3313 0 236 286 0 0 chr6 99366255 99366318 -83048924 - MIR SINE MIR -21 241 179 247 238 70 116 chr6 99366623 99366735 -83048507 - MER103 DNA DNA -1 165 62 3147 161 48 0 chr6 99366735 99367314 -83047928 + L1MB3 LINE L1 5577 6183 0 247 238 70 116 chr6 99367314 99367373 -83047869 - MER103 DNA DNA -104 62 2 229 279 150 21 chr6 99367644 99367784 -83047458 - L2 LINE L2 -819 2495 2338 342 238 0 0 chr6 99368529 99368592 -83046650 + L2 LINE L2 3251 3313 0 25 31 0 0 chr6 99369055 99369087 -83046155 + AT_rich Low_complexity Low_complexity 1 32 0 209 229 16 0 chr6 99371663 99371724 -83043518 + A-rich Low_complexity Low_complexity 1 62 0 895 183 11 48 chr6 99371966 99372152 -83043090 + MER20 DNA MER1_type 38 216 -3 349 348 46 40 chr6 99372826 99373154 -83042088 - L1 LINE L1 -1637 4509 4180 527 309 18 12 chr6 99373249 99373417 -83041825 - MER91A DNA MER1_type -25 171 3 313 351 20 0 chr6 99373431 99373579 -83041663 - L1 LINE L1 -1967 4179 4029 511 294 99 59 chr6 99373641 99374358 -83040884 + L1M4 LINE L1 4312 5057 -1089 341 44 73 44 chr6 99374573 99374710 -83040532 + (TA)n Simple_repeat Simple_repeat 1 141 0 282 250 19 9 chr6 99375632 99375740 -83039502 + (TA)n Simple_repeat Simple_repeat 2 110 0 1709 189 18 6 chr6 99375778 99376117 -83039125 + MER2 DNA MER2_type 1 343 -1 24 32 0 0 chr6 99376322 99376353 -83038889 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr6 99377952 99377987 -83037255 + AT_rich Low_complexity Low_complexity 1 35 0 1502 162 98 11 chr6 99380371 99380637 -83034605 + AluJo SINE Alu 1 289 -23 207 0 0 0 chr6 99380770 99380793 -83034449 + (CA)n Simple_repeat Simple_repeat 1 23 0 338 154 13 0 chr6 99380799 99380877 -83034365 + CT-rich Low_complexity Low_complexity 2 80 0 270 0 0 0 chr6 99380879 99380909 -83034333 + (CA)n Simple_repeat Simple_repeat 1 30 0 329 234 43 11 chr6 99381841 99381935 -83033307 - MIR SINE MIR -3 259 163 634 242 198 18 chr6 99381942 99382215 -83033027 - LTR50 LTR ERVL -2 793 472 518 244 13 26 chr6 99382440 99382596 -83032646 - MIR SINE MIR -103 159 6 334 338 55 7 chr6 99382657 99382802 -83032440 + MIR3 SINE MIR 41 192 -16 194 256 0 0 chr6 99383256 99383295 -83031947 - L2 LINE L2 -218 3054 3016 23 33 0 0 chr6 99383396 99383426 -83031816 + AT_rich Low_complexity Low_complexity 1 30 0 780 202 84 14 chr6 99383622 99383835 -83031407 + L1ME1 LINE L1 5785 6012 -154 349 314 101 0 chr6 99384105 99384274 -83030968 + MIR SINE MIR 20 205 -57 247 221 130 0 chr6 99384334 99384411 -83030831 + MIR3 SINE MIR 109 195 -13 384 59 0 0 chr6 99386151 99386202 -83029040 + (TC)n Simple_repeat Simple_repeat 2 52 0 243 259 17 0 chr6 99386202 99386260 -83028982 + (TG)n Simple_repeat Simple_repeat 1 59 0 191 410 51 0 chr6 99386565 99386682 -83028560 + MER5A DNA MER1_type 63 185 -4 324 113 88 62 chr6 99386791 99386871 -83028371 - L1ME4a LINE L1 -100 6021 5940 500 238 82 2 chr6 99386928 99387101 -83028141 - L1ME4a LINE L1 -307 5814 5615 4182 106 21 13 chr6 99387318 99387948 -83027294 - MER41B LTR ERV1 0 635 1 337 297 30 0 chr6 99387948 99388049 -83027193 + MER81 DNA DNA 10 113 -1 3411 162 98 8 chr6 99388595 99389250 -83025992 - MER72 LTR ERV1 0 722 9 373 303 287 7 chr6 99389716 99390023 -83025219 - L2 LINE L2 0 3313 2921 688 215 215 26 chr6 99390630 99390863 -83024379 - MLT1E LTR MaLR 0 626 311 478 242 50 45 chr6 99390921 99391119 -83024123 - HAL1 LINE L1 -1060 1447 1249 567 275 72 44 chr6 99391122 99391373 -83023869 - HAL1 LINE L1 -1485 1022 765 565 251 66 56 chr6 99391448 99391735 -83023507 - HAL1 LINE L1 -2113 394 105 180 111 0 0 chr6 99391743 99391770 -83023472 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1759 212 54 41 chr6 99392470 99392955 -83022287 + MLT1D LTR MaLR 12 502 -3 233 310 0 23 chr6 99393439 99393526 -83021716 - MLT1J2 LTR MaLR -332 118 34 235 235 210 12 chr6 99393556 99393637 -83021605 + MIR SINE MIR 86 182 -80 711 313 99 21 chr6 99394161 99394593 -83020649 - L3 LINE CR1 -145 1432 967 182 290 14 29 chr6 99396132 99396201 -83019041 + L2 LINE L2 3201 3268 -4 294 289 133 30 chr6 99396395 99396561 -83018681 - MIR SINE MIR -46 216 34 572 299 105 66 chr6 99397490 99398299 -83016943 + L1M4 LINE L1 3150 3989 -2157 1662 154 0 52 chr6 99398371 99398676 -83016566 + AluJb SINE Alu 9 297 -15 331 344 31 31 chr6 99398997 99399192 -83016050 - L1 LINE L1 -2421 3725 3531 2057 104 0 0 chr6 99399436 99399705 -83015537 - AluSx SINE Alu -11 301 33 483 223 29 0 chr6 99399771 99399874 -83015368 + MIR SINE MIR 31 136 -126 364 33 83 33 chr6 99399950 99400070 -83015172 + (TA)n Simple_repeat Simple_repeat 2 127 0 26 0 0 0 chr6 99450856 99450882 -82964360 + AT_rich Low_complexity Low_complexity 1 26 0 374 269 0 0 chr6 99452224 99452317 -82962925 + MLT2F LTR ERVL 1 93 -570 546 238 6 58 chr6 99452357 99452529 -82962713 + MLT1E3 LTR MaLR 60 222 -402 229 188 0 21 chr6 99452545 99452593 -82962649 + MLT2F LTR ERVL 242 288 -375 348 270 263 7 chr6 99455055 99455192 -82960050 + MER5A DNA MER1_type 11 182 -7 396 314 22 0 chr6 99455397 99455534 -82959708 - MIR3 SINE MIR -50 158 19 1246 208 42 78 chr6 99455903 99456287 -82958955 + MLT1A2 LTR MaLR 1 370 -4 230 171 0 0 chr6 99456367 99456402 -82958840 - L2 LINE L2 -18 3254 3220 671 261 25 20 chr6 99456638 99456837 -82958405 + MLT1H LTR MaLR 1 200 -349 352 235 69 0 chr6 99456948 99457050 -82958192 + MLT1H LTR MaLR 398 506 -43 423 272 114 0 chr6 99457149 99457307 -82957935 - MIR SINE MIR -16 246 71 1531 225 31 50 chr6 99457455 99457567 -82957675 + MLT1D LTR MaLR 5 118 -387 1722 226 73 29 chr6 99457567 99458049 -82957193 - MLT1D LTR MaLR 0 505 3 1531 225 31 50 chr6 99458049 99458393 -82956849 + MLT1D LTR MaLR 118 452 -53 282 349 103 43 chr6 99458427 99458659 -82956583 - MIR SINE MIR -6 256 11 412 324 9 0 chr6 99460382 99460514 -82954728 - MIR SINE MIR -62 146 12 240 365 25 14 chr6 99460951 99461122 -82954120 - MER5B DNA MER1_type -5 184 1 2007 293 90 27 chr6 99461137 99461870 -82953372 - L2 LINE L2 -2 3311 2464 1680 189 0 23 chr6 99461870 99462171 -82953071 + AluJo SINE Alu 1 294 -18 2007 293 90 27 chr6 99462171 99462605 -82952637 - L2 LINE L2 -849 2464 2059 1472 193 55 15 chr6 99463987 99464261 -82950981 + AluJo SINE Alu 1 285 -27 2302 132 31 3 chr6 99464954 99465340 -82949902 - MER57A LTR ERV1 -6 397 1 509 354 62 41 chr6 99465604 99466032 -82949210 + L2 LINE L2 2779 3216 -97 207 0 0 0 chr6 99466087 99466110 -82949132 + (CCA)n Simple_repeat Simple_repeat 1 23 0 514 272 44 13 chr6 99466110 99466268 -82948974 - MIR SINE MIR -11 251 89 1920 142 60 34 chr6 99466452 99466832 -82948410 - MLT1B LTR MaLR 0 390 1 4598 89 59 12 chr6 99467075 99467735 -82947507 - LTR8 LTR ERV1 0 691 1 2775 142 86 93 chr6 99468586 99469367 -82945875 - LTR48 LTR ERV1 -12 775 1 303 357 89 0 chr6 99469576 99469733 -82945509 + MER5A DNA MER1_type 19 189 0 6916 61 14 19 chr6 99469878 99471672 -82943570 - L1PA8 LINE L1 -10 6162 4389 3201 186 38 12 chr6 99472016 99472708 -82942534 - MER67C LTR ERV1 0 710 1 641 275 12 12 chr6 99473964 99474207 -82941035 + MIR SINE MIR 18 258 -4 2124 133 32 55 chr6 99474587 99475024 -82940218 - MER39 LTR ERV1 -38 669 243 1685 222 46 96 chr6 99475040 99475607 -82939635 - LTR8 LTR ERV1 0 691 98 231 36 0 0 chr6 99475607 99475635 -82939607 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1600 182 7 18 chr6 99475635 99475910 -82939332 - AluJb SINE Alu -28 284 13 1685 222 46 96 chr6 99475910 99476052 -82939190 - LTR8 LTR ERV1 -591 100 16 1073 161 23 37 chr6 99476092 99476309 -82938933 - MER39 LTR ERV1 -493 214 1 3947 103 156 67 chr6 99476324 99477083 -82938159 - LTR12 LTR ERV1 0 826 1 643 214 53 49 chr6 99477161 99477446 -82937796 - pTR5 LTR ERV1 -1410 1028 743 22 56 0 0 chr6 99477454 99477490 -82937752 + AT_rich Low_complexity Low_complexity 1 36 0 2360 67 0 0 chr6 99478989 99479306 -82935936 + AluY SINE Alu 1 317 0 24 67 0 0 chr6 99479945 99479990 -82935252 + AT_rich Low_complexity Low_complexity 1 45 0 2038 134 3 13 chr6 99481156 99481463 -82933779 + AluSx SINE Alu 1 304 -8 346 314 93 29 chr6 99481767 99481939 -82933303 + MER5A DNA MER1_type 1 183 -6 1026 285 178 12 chr6 99482140 99482635 -82932607 + MLT1G1 LTR MaLR 9 585 -10 1941 129 51 0 chr6 99482670 99482964 -82932278 - AluSx SINE Alu -3 309 1 236 325 66 24 chr6 99483405 99483571 -82931671 - L2 LINE L2 -44 3269 3097 327 230 70 20 chr6 99484369 99484469 -82930773 - MIR SINE MIR -44 218 114 243 0 0 0 chr6 99485640 99485667 -82929575 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr6 99485951 99485981 -82929261 + AT_rich Low_complexity Low_complexity 1 30 0 207 256 308 12 chr6 99486203 99486375 -82928867 - MIR SINE MIR -1 261 39 21 0 0 0 chr6 99486418 99486439 -82928803 + AT_rich Low_complexity Low_complexity 1 21 0 201 232 21 21 chr6 99487119 99487214 -82928028 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 333 353 41 45 chr6 99487339 99487583 -82927659 + MIR SINE MIR 8 250 -12 26 0 0 0 chr6 99488724 99488750 -82926492 + AT_rich Low_complexity Low_complexity 1 26 0 199 375 47 23 chr6 99489600 99489728 -82925514 + L2 LINE L2 3137 3267 -5 443 263 125 20 chr6 99490113 99490265 -82924977 + MER58C DNA MER1_type 27 194 -21 318 301 28 17 chr6 99491436 99491584 -82923658 + MIR SINE MIR 3 153 -66 282 243 14 14 chr6 99491616 99491690 -82923552 - L2 LINE L2 -15 3257 3184 2312 78 3 7 chr6 99492167 99492475 -82922767 + AluY SINE Alu 1 307 -4 186 337 45 73 chr6 99492865 99492889 -82922353 + L2 LINE L2 2688 2711 -603 1187 245 24 51 chr6 99492889 99493261 -82921981 + MLT1A1 LTR MaLR 3 364 -1 186 337 45 73 chr6 99493261 99493414 -82921828 + L2 LINE L2 2711 2860 -454 196 288 169 0 chr6 99493716 99493775 -82921467 + L2 LINE L2 3234 3302 -11 235 306 28 65 chr6 99494380 99494488 -82920754 - L2 LINE L2 -1 3271 3168 245 284 11 53 chr6 99494615 99494710 -82920532 + L3 LINE CR1 75 165 -1412 207 394 0 0 chr6 99494847 99494913 -82920329 + L3 LINE CR1 318 383 -1194 205 305 137 0 chr6 99494931 99495026 -82920216 + L3 LINE CR1 541 648 -929 401 351 174 20 chr6 99495128 99495535 -82919707 + L3 LINE CR1 660 1129 -448 2551 239 52 42 chr6 99496606 99497362 -82917880 - MER21B LTR ERV1 -81 782 20 22 0 0 0 chr6 99497822 99497844 -82917398 + AT_rich Low_complexity Low_complexity 1 22 0 244 352 176 9 chr6 99497857 99498067 -82917175 - MIR SINE MIR 0 262 18 31 26 0 0 chr6 99499146 99499184 -82916058 + AT_rich Low_complexity Low_complexity 1 38 0 225 0 0 0 chr6 99500167 99500192 -82915050 + (TG)n Simple_repeat Simple_repeat 1 25 0 240 282 54 59 chr6 99500975 99501155 -82914087 - MIR SINE MIR -50 212 38 947 215 43 19 chr6 99504029 99504238 -82911004 - MER20 DNA MER1_type -5 214 1 369 0 0 0 chr6 99504473 99504514 -82910728 + (TG)n Simple_repeat Simple_repeat 2 42 0 258 173 0 39 chr6 99504863 99504915 -82910327 - L2 LINE L2 0 3313 3264 182 118 29 0 chr6 99504929 99504963 -82910279 + CT-rich Low_complexity Low_complexity 2 36 0 1060 173 118 47 chr6 99505607 99505723 -82909519 + AluJo SINE Alu 1 107 -205 215 61 30 0 chr6 99505723 99505756 -82909486 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1060 173 118 47 chr6 99505756 99505894 -82909348 + AluJo SINE Alu 107 273 -39 776 221 146 50 chr6 99506788 99507069 -82908173 - MER97a DNA MER1_type? -586 308 1 217 218 211 68 chr6 99507089 99507222 -82908020 + MIR SINE MIR 108 259 -3 270 81 0 0 chr6 99507664 99507701 -82907541 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6612 85 0 0 chr6 99507701 99508836 -82906406 - L1PA8 LINE L1 -17 6155 5024 231 114 0 0 chr6 99508886 99508921 -82906321 + (CA)n Simple_repeat Simple_repeat 2 36 0 320 94 19 0 chr6 99509146 99509199 -82906043 + (TG)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr6 99509867 99509888 -82905354 + AT_rich Low_complexity Low_complexity 1 21 0 672 107 0 0 chr6 99509940 99510043 -82905199 - AluY SINE Alu -16 295 193 1796 183 35 46 chr6 99510090 99510350 -82904892 - MLT1B LTR MaLR 0 390 134 1502 94 26 43 chr6 99510350 99510584 -82904658 - MER30 DNA MER1_type 0 230 1 1796 183 35 46 chr6 99510584 99510717 -82904525 - MLT1B LTR MaLR -256 134 1 23 0 0 0 chr6 99510745 99510768 -82904474 + AT_rich Low_complexity Low_complexity 1 23 0 8021 75 9 9 chr6 99512043 99513158 -82902084 - L1P LINE L1 -2109 4037 2920 6192 87 2 32 chr6 99513158 99514109 -82901133 + L1PA7 LINE L1 5232 6154 0 1630 229 52 16 chr6 99514657 99515103 -82900139 + LTR40b LTR ERVL 1 462 0 23 68 0 0 chr6 99516521 99516565 -82898677 + AT_rich Low_complexity Low_complexity 1 44 0 1371 148 20 0 chr6 99517320 99517564 -82897678 + L1PA16 LINE L1 5909 6157 -9 429 267 91 27 chr6 99518172 99518359 -82896883 + L1M4 LINE L1 2979 3177 -2969 413 312 101 35 chr6 99518620 99519107 -82896135 + L1M4 LINE L1 3521 4039 -2107 897 268 28 97 chr6 99519186 99519608 -82895634 + LTR40c LTR ERVL 44 436 -29 381 329 80 44 chr6 99519724 99520113 -82895129 + L1M4 LINE L1 4109 4511 -1635 228 321 60 0 chr6 99520140 99520324 -82894918 + L1M4 LINE L1 4455 4649 -1497 296 330 67 26 chr6 99520472 99520742 -82894500 + L1M4 LINE L1 4878 5158 -988 359 299 16 18 chr6 99520806 99520985 -82894257 + L1P5 LINE L1 5299 5484 -672 374 316 91 32 chr6 99520999 99521252 -82893990 - MLT1L LTR MaLR -2 613 346 271 243 14 14 chr6 99521352 99521422 -82893820 - MLT1J LTR MaLR -333 178 109 255 282 120 0 chr6 99521754 99521871 -82893371 + MIR SINE MIR 16 146 -62 14631 147 14 6 chr6 99522609 99523433 -82891809 + Tigger1 DNA MER2_type 1 817 -1601 1967 145 40 0 chr6 99523433 99523730 -82891512 + AluSx SINE Alu 2 310 -2 14631 147 14 6 chr6 99523730 99525304 -82889938 + Tigger1 DNA MER2_type 817 2418 0 2280 87 7 23 chr6 99527339 99527649 -82887593 - AluSq SINE Alu -5 308 4 386 278 189 22 chr6 99528381 99528561 -82886681 - MIR SINE MIR -13 249 40 204 97 0 0 chr6 99528794 99528825 -82886417 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 273 333 43 89 chr6 99529005 99529287 -82885955 + L2 LINE L2 2550 2818 -496 331 143 57 29 chr6 99529774 99529844 -82885398 + L1P5 LINE L1 5721 5792 -359 329 311 0 0 chr6 99529848 99529938 -82885304 - L1MC4 LINE L1 -1339 6703 6614 719 99 0 0 chr6 99529941 99530042 -82885200 + L1PB1 LINE L1 5782 5882 -269 1388 50 0 11 chr6 99530233 99530414 -82884828 + L1PA5 LINE L1 5976 6154 0 2076 180 53 2 chr6 99531875 99532270 -82882972 - MSTB LTR MaLR -11 415 1 208 260 14 14 chr6 99532530 99532603 -82882639 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 288 233 0 0 chr6 99533572 99533632 -82881610 - MER5A DNA MER1_type -6 183 124 25 31 0 0 chr6 99533915 99533947 -82881295 + AT_rich Low_complexity Low_complexity 1 32 0 313 292 67 0 chr6 99534247 99534336 -82880906 + L2 LINE L2 3177 3271 -1 1777 121 9 96 chr6 99536085 99536195 -82879047 + MLT2A2 LTR ERVL 1 119 -334 2107 117 0 0 chr6 99536195 99536476 -82878766 + AluSx SINE Alu 1 310 0 229 35 0 0 chr6 99536476 99536505 -82878737 + (CAAAA)n Simple_repeat Simple_repeat 1 165 0 1777 121 9 96 chr6 99536505 99536725 -82878517 + MLT2A2 LTR ERVL 119 303 -150 9481 100 23 4 chr6 99536725 99538036 -82877206 + HERVL-A2 LTR ERVL 4319 5654 0 1886 182 32 41 chr6 99538036 99538539 -82876703 + MLT2A2 LTR ERVL 1 491 -63 2013 101 3 35 chr6 99538539 99538854 -82876388 + AluSx SINE Alu 3 308 0 1886 182 32 41 chr6 99538854 99538911 -82876331 + MLT2A2 LTR ERVL 491 547 -7 707 287 60 8 chr6 99539503 99539754 -82875488 - MLT1J1 LTR MaLR -177 269 6 467 30 0 69 chr6 99541185 99541286 -82873956 + (TA)n Simple_repeat Simple_repeat 1 94 0 467 338 22 35 chr6 99541743 99541971 -82873271 + L2 LINE L2 2601 2825 -489 11834 113 12 8 chr6 99541998 99544586 -82870656 - L1PA8A LINE L1 -1 6130 3533 2025 148 9 32 chr6 99544587 99544925 -82870317 + THE1C LTR MaLR 46 375 0 6588 88 2 0 chr6 99545163 99546406 -82868836 - L1PA7 LINE L1 -3 6466 5225 12950 104 22 13 chr6 99546420 99548434 -82866808 - L1PA7 LINE L1 -1407 5054 3023 3429 120 43 0 chr6 99548430 99548913 -82866329 - L1PA7 LINE L1 -5950 511 8 * 213 346 109 51 chr6 99548917 99549229 -82866013 - L2 LINE L2 -533 2781 2452 662 324 49 34 chr6 99550535 99550946 -82864296 + LTR16A LTR ERVL 1 417 -33 24 0 0 0 chr6 99552115 99552139 -82863103 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 99552433 99552454 -82862788 + AT_rich Low_complexity Low_complexity 1 21 0 651 196 16 79 chr6 99554115 99554304 -82860938 - MER3 DNA MER1_type -24 185 9 212 194 42 14 chr6 99554347 99554419 -82860823 + (TTATA)n Simple_repeat Simple_repeat 5 78 0 31 26 0 0 chr6 99555226 99555264 -82859978 + AT_rich Low_complexity Low_complexity 1 38 0 542 320 17 6 chr6 99555386 99555561 -82859681 + MER5B DNA MER1_type 2 178 0 27 49 0 0 chr6 99555682 99555723 -82859519 + AT_rich Low_complexity Low_complexity 1 41 0 574 323 47 0 chr6 99556299 99556491 -82858751 - MIR SINE MIR -52 210 10 218 327 93 19 chr6 99557123 99557230 -82858012 + L2 LINE L2 2262 2376 -938 221 309 91 9 chr6 99557759 99557869 -82857373 + L2 LINE L2 3023 3141 -172 240 318 82 0 chr6 99557919 99558004 -82857238 + L2 LINE L2 3177 3268 -4 22 35 0 0 chr6 99558657 99558686 -82856556 + AT_rich Low_complexity Low_complexity 1 29 0 1752 187 0 22 chr6 99558746 99559061 -82856181 + AluJo SINE Alu 1 308 -4 411 297 86 72 chr6 99559949 99560393 -82854849 - ERVL LTR ERVL -507 5257 4808 319 301 106 16 chr6 99560484 99560607 -82854635 - L2 LINE L2 0 3272 3139 1045 191 5 0 chr6 99560961 99561160 -82854082 + L1PB1 LINE L1 1 200 -6663 7711 118 150 10 chr6 99561160 99562501 -82852741 + L1PB1 LINE L1 634 2161 -4702 6338 143 8 2 chr6 99562511 99564045 -82851197 + L1PB1 LINE L1 5329 6867 0 32 0 0 0 chr6 99564085 99564117 -82851125 + AT_rich Low_complexity Low_complexity 1 32 0 339 25 0 0 chr6 99564540 99564580 -82850662 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 1609 153 108 0 chr6 99564992 99565260 -82849982 - AluSx SINE Alu -15 297 1 447 343 109 40 chr6 99565260 99565928 -82849314 - L2 LINE L2 -2084 1230 517 198 333 82 41 chr6 99566399 99566594 -82848648 + MIR SINE MIR 34 236 -26 234 388 52 0 chr6 99568176 99568292 -82846950 + L2 LINE L2 3115 3236 -36 236 297 14 0 chr6 99568292 99568366 -82846876 - MIR SINE MIR -109 153 79 206 400 30 0 chr6 99568476 99568576 -82846666 - L2 LINE L2 -1 3271 3169 2210 143 19 14 chr6 99570034 99570397 -82844845 + MER47A DNA MER2_type 2 366 0 24 67 0 0 chr6 99570485 99570530 -82844712 + AT_rich Low_complexity Low_complexity 1 45 0 258 389 8 15 chr6 99570621 99570752 -82844490 - MIR SINE MIR -130 132 3 399 347 7 13 chr6 99570894 99571044 -82844198 - MIR SINE MIR -106 156 8 559 256 19 43 chr6 99571146 99571357 -82843885 - L1ME LINE L1 -602 5568 5363 4614 219 35 12 chr6 99572011 99572146 -82843096 - L1MD1 LINE L1 0 6242 6112 2119 160 6 9 chr6 99572146 99572484 -82842758 + MER1B DNA MER1_type 1 337 0 4614 219 35 12 chr6 99572484 99574162 -82841080 - L1MD1 LINE L1 -130 6112 4383 402 259 133 77 chr6 99574170 99574652 -82840590 - L1ME LINE L1 -1487 4659 4151 13172 34 1 1 chr6 99574693 99577045 -82838197 - L1PA5 LINE L1 -2 6152 3799 1591 143 0 0 chr6 99577175 99577426 -82837816 - L1PA13 LINE L1 -1 6162 5912 8057 139 32 12 chr6 99577441 99579947 -82835295 + L1PBa LINE L1 6 2782 -4081 5822 217 19 1 chr6 99579953 99581275 -82833967 + L1 LINE L1 2827 4171 -2691 3575 117 18 0 chr6 99581274 99581832 -82833410 - L1PA13 LINE L1 -243 5925 5358 * 6481 193 61 9 chr6 99581902 99582036 -82833206 - L1MA9 LINE L1 0 7333 7207 2381 121 5 50 chr6 99582036 99582342 -82832900 + THE1B LTR MaLR 1 288 -76 2250 116 0 3 chr6 99582342 99582653 -82832589 + AluSq SINE Alu 1 310 -3 2381 121 5 50 chr6 99582653 99582727 -82832515 + THE1B LTR MaLR 288 364 0 6481 193 61 9 chr6 99582727 99585060 -82830182 - L1MA9 LINE L1 -126 7207 4721 307 152 0 0 chr6 99585064 99585110 -82830132 - MER21B LTR ERV1 -817 46 1 981 299 27 25 chr6 99585113 99585588 -82829654 - L1MA9 LINE L1 -4961 2207 1732 433 277 43 29 chr6 99586072 99586401 -82828841 - L1MEd LINE L1 -4875 1244 975 1253 149 70 5 chr6 99586482 99586696 -82828546 - MER30 DNA MER1_type 0 230 3 550 258 37 37 chr6 99586698 99586888 -82828354 + MIR SINE MIR 72 261 -1 242 352 56 0 chr6 99587410 99587518 -82827724 - L1MEd LINE L1 -5462 657 544 1353 229 104 37 chr6 99587598 99588060 -82827182 + MLT1D LTR MaLR 7 499 -6 273 57 0 0 chr6 99589734 99589769 -82825473 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr6 99590047 99590075 -82825167 + AT_rich Low_complexity Low_complexity 1 28 0 5603 189 24 14 chr6 99592000 99592395 -82822847 + L1PA16 LINE L1 3998 4388 -1778 261 0 0 0 chr6 99592395 99592424 -82822818 + (CA)n Simple_repeat Simple_repeat 2 30 0 5603 189 24 14 chr6 99592424 99594050 -82821192 + L1PA16 LINE L1 4388 5997 -169 1986 174 36 22 chr6 99594050 99594407 -82820835 + THE1B LTR MaLR 1 362 -2 11628 97 8 0 chr6 99594409 99595977 -82819265 + THE1B-int LTR MaLR 1 1580 0 2224 144 28 19 chr6 99595977 99596338 -82818904 + THE1B LTR MaLR 1 364 0 5603 189 24 14 chr6 99596338 99596466 -82818776 + L1PA16 LINE L1 5996 6166 0 3148 240 43 14 chr6 99596755 99596876 -82818366 - L1MC4a LINE L1 0 7808 7692 7655 25 0 0 chr6 99596876 99597854 -82817388 + L1PA4 LINE L1 5179 6155 0 3148 240 43 14 chr6 99597854 99598642 -82816600 - L1MC4a LINE L1 -116 7692 6873 584 271 38 17 chr6 99598641 99598877 -82816365 - L1M4 LINE L1 -2467 3679 3439 * 976 92 7 59 chr6 99598888 99599040 -82816202 - AluY SINE Alu -132 179 36 1860 240 69 13 chr6 99599041 99599733 -82815509 - L1M4 LINE L1 -2972 3174 2444 26 50 0 0 chr6 99599789 99599829 -82815413 + AT_rich Low_complexity Low_complexity 1 40 0 1531 206 21 41 chr6 99600105 99600444 -82814798 + MLT1E1 LTR MaLR 3 334 -320 304 314 27 53 chr6 99600471 99600659 -82814583 + ERVL LTR ERVL 1246 1428 -4336 1986 97 19 4 chr6 99601075 99601343 -82813899 + AluSg SINE Alu 24 295 -15 23 0 0 0 chr6 99601371 99601394 -82813848 + AT_rich Low_complexity Low_complexity 1 23 0 4582 228 68 23 chr6 99601551 99603176 -82812066 + L1MD1 LINE L1 984 2677 -3863 3908 211 75 14 chr6 99603168 99604312 -82810930 + L1MD1 LINE L1 5433 6636 0 * 2224 79 4 0 chr6 99605480 99605803 -82809439 - AluY SINE Alu 0 324 1 1567 208 10 7 chr6 99606026 99606039 -82809203 - AluJb SINE Alu -17 295 284 237 83 0 0 chr6 99606039 99606075 -82809167 + (TG)n Simple_repeat Simple_repeat 1 36 0 1567 208 10 7 chr6 99606075 99606355 -82808887 - AluJb SINE Alu -28 284 1 2037 132 10 3 chr6 99606559 99606862 -82808380 + AluSx SINE Alu 1 305 -7 589 290 61 13 chr6 99608376 99608604 -82806638 - MIR SINE MIR -11 251 17 345 290 161 13 chr6 99608626 99608781 -82806461 - MIR SINE MIR -1 261 84 26 0 0 0 chr6 99608934 99608960 -82806282 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr6 99608999 99609025 -82806217 + (CA)n Simple_repeat Simple_repeat 2 27 0 249 196 0 0 chr6 99609747 99609798 -82805444 + CT-rich Low_complexity Low_complexity 2 52 0 1568 158 91 3 chr6 99609800 99609959 -82805283 - AluSx SINE Alu -1 311 167 387 0 0 0 chr6 99609959 99610002 -82805240 + (TG)n Simple_repeat Simple_repeat 2 44 0 1568 158 91 3 chr6 99610002 99610127 -82805115 - AluSx SINE Alu -145 167 2 895 109 0 61 chr6 99610153 99610318 -82804924 - L1PA11 LINE L1 -1 6173 6019 26 0 0 0 chr6 99610636 99610662 -82804580 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr6 99612602 99612645 -82802597 + AT_rich Low_complexity Low_complexity 1 43 0 260 259 0 0 chr6 99612729 99612783 -82802459 - HsTC2 DNA Tc2 -606 1292 1239 368 163 31 20 chr6 99612814 99612912 -82802330 - HsTC2 DNA Tc2 -1799 99 1 229 324 159 14 chr6 99612917 99613062 -82802180 - MIR3 SINE MIR -40 168 3 216 370 101 0 chr6 99613510 99613629 -82801613 - L2 LINE L2 -242 3030 2900 396 290 205 36 chr6 99614136 99614172 -82801070 - L2 LINE L2 -13 3300 3271 1097 162 99 33 chr6 99614172 99614475 -82800767 + MER33 DNA MER1_type 2 324 0 396 290 205 36 chr6 99614475 99614638 -82800604 - L2 LINE L2 -42 3271 3137 2162 116 0 0 chr6 99614638 99614948 -82800294 - AluSg SINE Alu 0 310 1 396 290 205 36 chr6 99614948 99615223 -82800019 - L2 LINE L2 -176 3137 2755 764 262 129 60 chr6 99615223 99615525 -82799717 + MLT1H LTR MaLR 1 323 -226 2648 320 126 18 chr6 99615712 99617314 -82797928 - L2 LINE L2 -742 2572 799 386 255 69 48 chr6 99617317 99617462 -82797780 + MER20B DNA MER1_type 7 154 -629 247 258 32 0 chr6 99617458 99617520 -82797722 + MER20B DNA MER1_type 453 516 -267 * 27 0 0 0 chr6 99618183 99618210 -82797032 + AT_rich Low_complexity Low_complexity 1 27 0 730 187 71 19 chr6 99619167 99619322 -82795920 - AluJb SINE Alu -10 302 140 616 13 0 0 chr6 99719657 99719735 -82695507 - AluY SINE Alu -232 78 1 302 270 22 0 chr6 99721101 99721190 -82694052 + L2 LINE L2 3223 3313 0 24 0 0 0 chr6 99722594 99722618 -82692624 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr6 99723033 99723054 -82692188 + (CCA)n Simple_repeat Simple_repeat 3 23 0 251 343 50 70 chr6 99724103 99724444 -82690798 + L1M3d LINE L1 456 789 -5514 1846 245 65 26 chr6 99724532 99725340 -82689902 + L1M3d LINE L1 797 1784 -4519 523 319 16 16 chr6 99725464 99725649 -82689593 + MIR SINE MIR 19 203 -59 306 0 0 0 chr6 99727677 99727711 -82687531 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr6 99730410 99730432 -82684810 + AT_rich Low_complexity Low_complexity 1 22 0 1963 118 7 4 chr6 99730440 99730719 -82684523 - AluSg SINE Alu -30 280 1 502 324 80 0 chr6 99730883 99731121 -82684121 - LTR16B LTR ERVL 0 464 208 333 250 26 0 chr6 99731127 99731203 -82684039 - MER69 DNA AcHobo -2071 455 378 1326 261 112 74 chr6 99731282 99731350 -82683892 + MLT1E LTR MaLR 1 65 -528 842 210 6 0 chr6 99731350 99731507 -82683735 + FRAM SINE Alu 1 158 -8 369 0 0 0 chr6 99731508 99731549 -82683693 + (CA)n Simple_repeat Simple_repeat 2 42 0 1326 261 112 74 chr6 99731549 99732049 -82683193 + MLT1E LTR MaLR 64 593 0 183 80 0 0 chr6 99733561 99733586 -82681656 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 189 229 0 0 chr6 99733788 99733836 -82681406 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 1835 232 114 7 chr6 99735369 99735834 -82679408 - MLT1E2 LTR MaLR 0 626 112 21 0 0 0 chr6 99735969 99735990 -82679252 + AT_rich Low_complexity Low_complexity 1 21 0 2484 44 0 7 chr6 99736632 99736926 -82678316 - AluY SINE Alu -18 293 2 2213 103 10 0 chr6 99737312 99737622 -82677620 - AluSp SINE Alu 0 313 1 992 311 38 57 chr6 99737627 99738080 -82677162 + LTR16C LTR ERVL 47 490 -1 22 0 0 0 chr6 99740175 99740197 -82675045 + AT_rich Low_complexity Low_complexity 1 22 0 2222 202 62 52 chr6 99741647 99742121 -82673121 + MLT2B3 LTR ERVL 3 485 -69 609 14 0 0 chr6 99742121 99742191 -82673051 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 2222 202 62 52 chr6 99742191 99742260 -82672982 + MLT2B3 LTR ERVL 485 552 -2 354 169 0 0 chr6 99742273 99742338 -82672904 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 304 197 70 0 chr6 99742339 99742410 -82672832 + L1MCa LINE L1 2006 2081 -4345 1653 186 4 0 chr6 99742416 99742685 -82672557 - AluJb SINE Alu -32 280 11 254 297 108 94 chr6 99742790 99743002 -82672240 - L2 LINE L2 -16 3297 3083 358 367 103 19 chr6 99743039 99743456 -82671786 + L2 LINE L2 827 1278 -2036 626 346 134 30 chr6 99743890 99744276 -82670966 + L2 LINE L2 2000 2344 -970 2755 171 16 57 chr6 99744276 99744330 -82670912 - MLT2B3 LTR ERVL 0 554 499 503 15 0 15 chr6 99744330 99744395 -82670847 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2755 171 16 57 chr6 99744395 99744705 -82670537 - MLT2B3 LTR ERVL -55 499 220 1912 161 33 0 chr6 99744705 99745009 -82670233 - 7SLRNA srpRNA srpRNA -6 314 1 2755 171 16 57 chr6 99745009 99745221 -82670021 - MLT2B3 LTR ERVL -334 220 1 626 346 134 30 chr6 99745221 99745660 -82669582 + L2 LINE L2 2344 2911 -403 251 244 0 39 chr6 99745739 99745817 -82669425 + MER94 DNA DNA 32 106 -28 672 267 17 30 chr6 99745885 99746161 -82669081 + MER20B DNA MER1_type 410 683 -100 1568 205 70 3 chr6 99746161 99746503 -82668739 + MLT1A1 LTR MaLR 1 365 0 672 267 17 30 chr6 99746503 99746522 -82668720 + MER20B DNA MER1_type 683 701 -82 647 332 18 5 chr6 99746990 99747207 -82668035 + MER115 DNA AcHobo 19 238 -455 981 303 36 31 chr6 99747237 99747593 -82667649 + MER115 DNA AcHobo 334 691 -2 465 254 0 0 chr6 99747682 99747792 -82667450 + LTR33 LTR ERVL 402 511 -10 526 330 61 27 chr6 99748887 99749184 -82666058 - L2 LINE L2 -1 3312 3006 2293 92 7 0 chr6 99750328 99750631 -82664611 + AluSx SINE Alu 1 305 -7 254 191 0 15 chr6 99750943 99751011 -82664231 + (TA)n Simple_repeat Simple_repeat 2 68 0 2393 70 0 13 chr6 99751088 99751387 -82663855 + AluY SINE Alu 1 295 -16 398 208 28 97 chr6 99751510 99751545 -82663697 + MIR3 SINE MIR 47 83 -125 3357 138 32 17 chr6 99751545 99752141 -82663101 + L1MA3 LINE L1 5701 6305 0 398 208 28 97 chr6 99752141 99752249 -82662993 + MIR3 SINE MIR 83 180 -28 1162 216 48 16 chr6 99752363 99752696 -82662546 - MLT1B LTR MaLR 0 390 1 24 53 0 0 chr6 99752949 99752987 -82662255 + AT_rich Low_complexity Low_complexity 1 38 0 675 337 23 27 chr6 99754051 99754312 -82660930 + MIR SINE MIR 3 262 0 302 258 45 0 chr6 99755211 99755300 -82659942 + MLT1L LTR MaLR 477 569 -46 245 245 0 0 chr6 99755553 99755602 -82659640 + GA-rich Low_complexity Low_complexity 2 50 0 210 37 0 0 chr6 99755922 99755949 -82659293 + (TA)n Simple_repeat Simple_repeat 1 27 0 6983 86 10 0 chr6 99756078 99757082 -82658160 + L1PA7 LINE L1 2399 3412 -2734 14484 75 7 0 chr6 99757898 99760624 -82654618 + L1PA7 LINE L1 3419 6153 -1 35 71 0 0 chr6 99760669 99760739 -82654503 + AT_rich Low_complexity Low_complexity 1 70 0 1709 144 11 0 chr6 99761452 99761715 -82653527 - AluJo SINE Alu -18 294 29 21 0 0 0 chr6 99762447 99762468 -82652774 + AT_rich Low_complexity Low_complexity 1 21 0 411 300 0 0 chr6 99764794 99764915 -82650327 + MIR3 SINE MIR 46 167 -41 242 280 268 13 chr6 99765381 99765538 -82649704 - MIR SINE MIR -36 226 30 200 119 0 24 chr6 99767136 99767178 -82648064 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 555 126 0 0 chr6 99767178 99767265 -82647977 + (TTC)n Simple_repeat Simple_repeat 2 88 0 649 133 42 7 chr6 99767269 99767412 -82647830 + CT-rich Low_complexity Low_complexity 1 148 0 871 199 13 0 chr6 99767415 99767571 -82647671 - AluJb SINE Alu -20 292 135 2240 117 0 3 chr6 99769217 99769525 -82645717 + AluSx SINE Alu 1 307 -5 314 190 37 7 chr6 99772100 99772378 -82642864 + (TA)n Simple_repeat Simple_repeat 1 286 0 207 69 0 0 chr6 99772378 99772407 -82642835 + (GA)n Simple_repeat Simple_repeat 2 30 0 520 256 22 7 chr6 99772408 99772545 -82642697 + L1MDa LINE L1 121 259 -6281 * 998 202 36 12 chr6 99772542 99772790 -82642452 + L1MDa LINE L1 2154 2407 -4133 243 100 0 0 chr6 99773226 99773266 -82641976 - L1MA10 LINE L1 -18 6316 6277 262 208 0 0 chr6 99773270 99773323 -82641919 + L1MD2 LINE L1 5894 5946 -413 553 247 20 13 chr6 99773397 99773547 -82641695 + L1MD2 LINE L1 6194 6344 -15 902 266 11 28 chr6 99773563 99773845 -82641397 + L1ME1 LINE L1 5884 6160 -6 1162 257 30 24 chr6 99775176 99775515 -82639727 - MLT1A2 LTR MaLR -1 373 33 22 0 0 0 chr6 99775570 99775592 -82639650 + AT_rich Low_complexity Low_complexity 1 22 0 1361 185 48 60 chr6 99775819 99776133 -82639109 - AluJo SINE Alu -2 310 1 358 297 138 18 chr6 99777370 99777646 -82637596 - L1ME4a LINE L1 -244 5877 5569 898 269 76 4 chr6 99778820 99779116 -82636126 + MLT2B1 LTR ERVL 1 310 -205 5363 140 30 5 chr6 99779131 99780152 -82635090 - L1PA16 LINE L1 -9 6157 5096 189 0 0 0 chr6 99780152 99780173 -82635069 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5363 140 30 5 chr6 99780173 99780631 -82634611 - L1PA16 LINE L1 -1070 5096 4651 992 286 69 56 chr6 99780749 99780952 -82634290 + L2 LINE L2 2535 2734 -579 977 215 157 66 chr6 99780952 99781315 -82633927 + MSTD LTR MaLR 1 396 0 992 286 69 56 chr6 99781315 99781893 -82633349 + L2 LINE L2 2734 3311 -2 1393 227 43 0 chr6 99782671 99782948 -82632294 + AluJo SINE Alu 1 289 -23 267 316 53 64 chr6 99783155 99783326 -82631916 + L2 LINE L2 2930 3098 -174 24 0 0 0 chr6 99783829 99783853 -82631389 + AT_rich Low_complexity Low_complexity 1 24 0 13869 153 20 4 chr6 99784611 99786989 -82628253 + Tigger1 DNA MER2_type 3 2418 0 6991 142 26 7 chr6 99787070 99788276 -82626966 - Tigger3b DNA MER2_type -1 1230 1 482 247 185 22 chr6 99788337 99788515 -82626727 + MIR SINE MIR 4 210 -52 2357 74 7 3 chr6 99790556 99790854 -82624388 + AluY SINE Alu 1 299 -12 231 263 0 38 chr6 99792447 99792527 -82622715 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 3023 221 116 10 chr6 99792591 99793300 -82621942 + Zaphod DNA AcHobo 1 826 -3205 2194 89 14 0 chr6 99793300 99793591 -82621651 - AluSg SINE Alu -5 305 11 3023 221 116 10 chr6 99793591 99793776 -82621466 + Zaphod DNA AcHobo 826 990 -3041 272 188 75 0 chr6 99793774 99793854 -82621388 + Zaphod DNA AcHobo 3595 3680 -351 * 326 229 180 8 chr6 99793866 99793988 -82621254 + Zaphod DNA AcHobo 3833 3975 -56 21 71 0 0 chr6 99795767 99795809 -82619433 + AT_rich Low_complexity Low_complexity 1 42 0 772 160 0 12 chr6 99796069 99796238 -82619004 + GA-rich Low_complexity Low_complexity 3 169 0 30 59 0 0 chr6 99796679 99796730 -82618512 + AT_rich Low_complexity Low_complexity 1 51 0 258 252 9 27 chr6 99797130 99797241 -82618001 + (TA)n Simple_repeat Simple_repeat 1 109 0 23 0 0 0 chr6 99797364 99797387 -82617855 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr6 99798676 99798723 -82616519 + AT_rich Low_complexity Low_complexity 1 47 0 300 320 10 0 chr6 99798723 99798826 -82616416 + L1MC4 LINE L1 7327 7430 -612 487 256 141 51 chr6 99798851 99799241 -82616001 + L1MC5 LINE L1 7311 7735 -226 1003 203 43 117 chr6 99799247 99799641 -82615601 + MLT1A1 LTR MaLR 1 365 0 285 98 0 0 chr6 99799675 99799716 -82615526 + (TG)n Simple_repeat Simple_repeat 1 41 0 222 174 0 0 chr6 99799850 99799896 -82615346 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 239 250 0 18 chr6 99800466 99800522 -82614720 - MIR SINE MIR -8 254 200 1575 144 0 20 chr6 99800694 99800968 -82614274 + AluSx SINE Alu 37 305 0 1345 304 71 14 chr6 99801227 99801805 -82613437 + MLT1L LTR MaLR 1 611 -4 326 217 0 0 chr6 99803167 99803227 -82612015 + L2 LINE L2 3210 3269 -3 182 114 0 29 chr6 99805471 99805506 -82609736 + (GAA)n Simple_repeat Simple_repeat 2 35 0 460 360 33 14 chr6 99807201 99807412 -82607830 - MLT1J2 LTR MaLR -213 237 23 847 196 6 0 chr6 99807794 99807952 -82607290 - MLT-int LTR MaLR -1572 163 5 2118 203 62 26 chr6 99807956 99808458 -82606784 - MLT2B1 LTR ERVL 0 520 1 195 374 88 14 chr6 99808514 99808661 -82606581 - L2 LINE L2 -2470 844 687 2064 120 0 3 chr6 99809058 99809358 -82605884 + AluSx SINE Alu 1 299 -13 203 139 47 0 chr6 99809960 99810003 -82605239 + GA-rich Low_complexity Low_complexity 2 46 0 219 162 0 0 chr6 99810217 99810254 -82604988 + L2 LINE L2 3277 3313 0 2789 231 38 19 chr6 99812489 99813124 -82602118 - MER82 DNA MER2_type 0 653 7 22 0 0 0 chr6 99813130 99813152 -82602090 + AT_rich Low_complexity Low_complexity 1 22 0 1536 173 0 0 chr6 99813443 99813691 -82601551 + AluJb SINE Alu 62 309 -3 3331 178 47 10 chr6 99815427 99816110 -82599132 - L1MB3 LINE L1 -2 6181 5470 207 0 0 0 chr6 99816110 99816133 -82599109 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3331 178 47 10 chr6 99816133 99816159 -82599083 - L1MB3 LINE L1 -713 5470 5446 255 361 146 15 chr6 99816160 99816290 -82598952 - MIR3 SINE MIR -38 170 24 417 257 114 29 chr6 99816795 99816935 -82598307 - L2 LINE L2 0 3313 3162 526 260 51 45 chr6 99816964 99817141 -82598101 + Charlie8 DNA MER1_type 1 178 -2239 198 336 37 37 chr6 99817156 99817263 -82597979 - L2 LINE L2 -253 3060 2954 240 326 136 54 chr6 99819146 99819325 -82595917 - L2 LINE L2 -6 3307 3144 2011 128 24 7 chr6 99819325 99819623 -82595619 + AluSx SINE Alu 1 303 -9 240 326 136 54 chr6 99819623 99819953 -82595289 - L2 LINE L2 -169 3144 2717 197 333 151 41 chr6 99820362 99820419 -82594823 - MIR SINE MIR 0 262 213 2125 133 33 28 chr6 99820419 99820781 -82594461 - THE1B LTR MaLR 0 364 1 197 333 151 41 chr6 99820781 99820942 -82594300 - MIR SINE MIR -49 213 20 22 35 0 0 chr6 99821130 99821159 -82594083 + AT_rich Low_complexity Low_complexity 1 29 0 2402 90 3 0 chr6 99821568 99821880 -82593362 + AluSp SINE Alu 1 313 0 214 275 113 38 chr6 99822187 99822267 -82592975 + MIR SINE MIR 20 105 -157 210 219 0 0 chr6 99822332 99822373 -82592869 + L2 LINE L2 3261 3301 -12 180 339 0 0 chr6 99822471 99822536 -82592706 + MIR SINE MIR 71 135 -73 319 130 0 0 chr6 99823745 99823799 -82591443 - MER116 DNA Mariner -21 59 6 225 350 48 27 chr6 99824972 99825158 -82590084 - LTR16A1 LTR ERVL -257 200 11 288 0 0 0 chr6 99825528 99825560 -82589682 + (GA)n Simple_repeat Simple_repeat 1 32 0 649 317 22 22 chr6 99828522 99828746 -82586496 + MIR SINE MIR 28 251 -11 301 302 68 0 chr6 99829319 99829450 -82585792 + MIR SINE MIR 15 163 -65 21 0 0 0 chr6 99829810 99829831 -82585411 + AT_rich Low_complexity Low_complexity 1 21 0 265 264 83 33 chr6 99830261 99830382 -82584860 - MIR SINE MIR -76 186 60 3696 30 0 0 chr6 99831740 99832223 -82583019 + L1PA4 LINE L1 5704 6186 0 321 360 35 15 chr6 99833133 99833333 -82581909 + MIR SINE MIR 49 252 -10 1918 147 14 0 chr6 99834437 99834730 -82580512 + AluSx SINE Alu 1 297 -15 579 298 44 19 chr6 99835365 99835570 -82579672 + MIR SINE MIR 53 262 0 180 0 0 0 chr6 99836133 99836153 -82579089 + (A)n Simple_repeat Simple_repeat 1 20 0 349 241 32 50 chr6 99836932 99837076 -82578166 + MLT1J2 LTR MaLR 296 401 -8 312 27 0 0 chr6 99837599 99837636 -82577606 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 1211 195 62 4 chr6 99837658 99837915 -82577327 - MLT1E LTR MaLR -46 547 276 1148 277 73 40 chr6 99837930 99838424 -82576818 + LTR33 LTR ERVL 5 514 -7 7469 208 31 16 chr6 99838510 99841295 -82573947 - L1MB3 LINE L1 -2 6417 3595 10670 196 51 26 chr6 99841316 99843986 -82571256 - L1MB3 LINE L1 -3625 2757 21 2665 144 9 21 chr6 99844784 99845215 -82570027 - MSTB LTR MaLR 0 426 1 2095 132 0 0 chr6 99845351 99845646 -82569596 - AluSc SINE Alu -12 297 3 215 167 0 21 chr6 99846102 99846150 -82569092 + CT-rich Low_complexity Low_complexity 3 49 0 316 295 65 36 chr6 99846348 99846487 -82568755 + LTR67 LTR ERVL 10 152 -405 440 184 83 18 chr6 99846628 99846737 -82568505 + LTR67 LTR ERVL 434 549 -8 283 322 24 24 chr6 99847023 99847159 -82568083 + MER5B DNA MER1_type 54 178 0 290 301 62 9 chr6 99847372 99847485 -82567757 + MIR SINE MIR 37 155 -107 343 232 91 10 chr6 99847599 99847698 -82567544 + MLT1J2 LTR MaLR 15 121 -329 369 174 0 0 chr6 99850958 99851027 -82564215 + (TG)n Simple_repeat Simple_repeat 1 69 0 245 128 21 0 chr6 99851026 99851073 -82564169 + GA-rich Low_complexity Low_complexity 1 48 0 * 540 262 96 16 chr6 99852372 99852559 -82562683 + MIR SINE MIR 49 250 -12 392 211 59 9 chr6 99852673 99852780 -82562462 + L1MC4a LINE L1 7675 8021 -21 357 82 0 0 chr6 99852976 99853025 -82562217 + (TG)n Simple_repeat Simple_repeat 1 49 0 348 281 7 67 chr6 99853494 99853629 -82561613 - L2 LINE L2 -170 3102 2976 600 363 102 25 chr6 99853675 99854246 -82560996 - L2 LINE L2 -416 2898 2284 3026 78 39 18 chr6 99854246 99854706 -82560536 + L1PA10 LINE L1 5703 6171 0 1112 201 27 15 chr6 99854713 99854976 -82560266 + L1MD3 LINE L1 7730 7995 0 2561 174 45 54 chr6 99855987 99856546 -82558696 - MLT2B3 LTR ERVL 0 554 1 228 35 0 0 chr6 99856846 99856875 -82558367 + (T)n Simple_repeat Simple_repeat 1 29 0 496 345 24 17 chr6 99857365 99857774 -82557468 - Charlie4 DNA MER1_type -1127 834 423 317 327 9 9 chr6 99858266 99858379 -82556863 - L2 LINE L2 -4 3309 3197 21 57 0 0 chr6 99858493 99858528 -82556714 + AT_rich Low_complexity Low_complexity 1 35 0 29 60 0 0 chr6 99859986 99860036 -82555206 + AT_rich Low_complexity Low_complexity 1 50 0 926 298 86 37 chr6 99860773 99861269 -82553973 - L2 LINE L2 0 3313 2798 275 206 32 0 chr6 99861325 99861388 -82553854 - MER5A DNA MER1_type -83 106 42 * 2629 275 117 103 chr6 99861373 99862412 -82552830 - L2 LINE L2 -484 2830 1660 242 216 31 52 chr6 99862412 99862509 -82552733 - L1MC5 LINE L1 -53 7908 7814 2629 275 117 103 chr6 99862509 99863210 -82552032 - L2 LINE L2 -1654 1660 970 304 314 50 69 chr6 99863662 99863923 -82551319 + MIR SINE MIR 1 256 -6 202 319 111 0 chr6 99864124 99864259 -82550983 + L2 LINE L2 3160 3309 -4 242 56 28 0 chr6 99864546 99864582 -82550660 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 29 60 0 0 chr6 99865107 99865157 -82550085 + AT_rich Low_complexity Low_complexity 1 50 0 200 278 0 28 chr6 99865168 99865240 -82550002 + (CATA)n Simple_repeat Simple_repeat 3 72 0 1218 118 0 5 chr6 99865909 99866096 -82549146 - L1PA13 LINE L1 -1 6162 5977 2505 131 133 2 chr6 99866096 99866583 -82548659 + Tigger3(Golem) DNA MER2_type 2186 2736 -293 1925 192 32 31 chr6 99866583 99867135 -82548107 + MLT2A2 LTR ERVL 1 554 0 1590 157 36 52 chr6 99867135 99867435 -82547807 + Tigger3(Golem) DNA MER2_type 2733 3027 -2 306 247 71 12 chr6 99867484 99867569 -82547673 + L1MC4 LINE L1 6614 6703 -1339 280 250 110 20 chr6 99868287 99868387 -82546855 - MER115 DNA AcHobo -584 109 1 198 313 164 0 chr6 99869603 99869731 -82545511 + MIR SINE MIR 90 238 -24 1942 269 51 9 chr6 99869856 99870406 -82544836 - MER119 DNA MER1_type -10 573 1 180 277 265 0 chr6 99870577 99870660 -82544582 - MER5A DNA MER1_type -20 169 65 680 264 47 14 chr6 99871418 99871634 -82543608 + MIR SINE MIR 35 261 -1 341 384 78 0 chr6 99871670 99871954 -82543288 - L1M4 LINE L1 -2330 3816 3511 21 0 0 0 chr6 99872020 99872041 -82543201 + AT_rich Low_complexity Low_complexity 1 21 0 18491 68 7 2 chr6 99872062 99875315 -82539927 - L1PA6 LINE L1 -1 6153 2887 10263 141 12 25 chr6 99875322 99877063 -82538179 - L1PA6 LINE L1 -4417 1729 11 598 135 7 135 chr6 99877108 99877249 -82537993 - MSTC LTR MaLR -85 343 221 1925 251 54 9 chr6 99877826 99878360 -82536882 + MER63C DNA MER1_type 91 648 -282 2702 225 47 10 chr6 99878392 99879013 -82536229 - MER82 DNA MER2_type 0 653 10 919 203 87 4 chr6 99879019 99879260 -82535982 + MER63C DNA MER1_type 671 931 0 2495 282 107 65 chr6 99879337 99880966 -82534276 - L2 LINE L2 -164 3149 1452 1649 134 0 0 chr6 99881106 99881337 -82533905 + AluSx SINE Alu 1 231 -81 23 33 0 0 chr6 99881482 99881512 -82533730 + AT_rich Low_complexity Low_complexity 1 30 0 358 331 43 66 chr6 99881751 99881892 -82533350 - HAL1b LINE L1 -616 732 589 1485 224 24 27 chr6 99881892 99882267 -82532975 + MLT1A2 LTR MaLR 1 374 0 358 331 43 66 chr6 99882267 99882287 -82532955 - HAL1b LINE L1 -759 589 570 573 55 0 0 chr6 99882287 99882360 -82532882 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 358 331 43 66 chr6 99882360 99882544 -82532698 - HAL1b LINE L1 -778 570 394 201 175 0 0 chr6 99882593 99882633 -82532609 + CT-rich Low_complexity Low_complexity 3 42 0 216 67 0 0 chr6 99882804 99882834 -82532408 + (TA)n Simple_repeat Simple_repeat 2 31 0 29 90 0 0 chr6 99884531 99884609 -82530633 + AT_rich Low_complexity Low_complexity 1 78 0 369 273 23 68 chr6 99885400 99885532 -82529710 - L2 LINE L2 -10 3303 3178 386 230 35 0 chr6 99886203 99886290 -82528952 + L1MC4 LINE L1 6614 6703 -1339 196 111 44 0 chr6 99886293 99886338 -82528904 + (TA)n Simple_repeat Simple_repeat 2 48 0 367 304 78 30 chr6 99886338 99886353 -82528889 - L1ME4a LINE L1 -157 5964 5951 2112 118 0 3 chr6 99886353 99886667 -82528575 - AluSq SINE Alu 0 313 1 367 304 78 30 chr6 99886667 99886880 -82528362 - L1ME4a LINE L1 -170 5951 5724 1783 156 0 18 chr6 99886897 99887179 -82528063 + AluJo SINE Alu 1 277 -35 195 162 0 0 chr6 99887180 99887217 -82528025 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2432 77 0 3 chr6 99887427 99887738 -82527504 + AluY SINE Alu 1 310 -1 537 303 42 0 chr6 99887748 99887913 -82527329 + MIR SINE MIR 26 197 -65 712 154 0 54 chr6 99887943 99888073 -82527169 - AluSq/x SINE Alu -190 123 1 183 224 61 0 chr6 99888073 99888122 -82527120 + MIR SINE MIR 173 224 -38 421 183 58 42 chr6 99888516 99888636 -82526606 - MER101B LTR ERV1 -448 122 1 33 66 0 0 chr6 99889107 99889168 -82526074 + AT_rich Low_complexity Low_complexity 1 61 0 2039 169 16 53 chr6 99889308 99889759 -82525483 - Tigger2a DNA MER2_type 0 434 1 1590 154 59 16 chr6 99889765 99890057 -82525185 - Tigger3(Golem) DNA MER2_type 0 3029 2725 3220 196 67 60 chr6 99890057 99890274 -82524968 + MER21B LTR ERV1 1 215 -648 1802 168 165 5 chr6 99890274 99890643 -82524599 + MSTA LTR MaLR 1 428 0 3220 196 67 60 chr6 99890643 99891196 -82524046 + MER21B LTR ERV1 215 777 -86 324 48 0 0 chr6 99891687 99891729 -82523513 + (CA)n Simple_repeat Simple_repeat 2 43 0 2343 104 0 10 chr6 99892204 99892513 -82522729 + AluSq SINE Alu 1 306 -7 897 196 6 0 chr6 99892528 99892686 -82522556 - FRAM SINE Alu -7 159 1 288 297 57 57 chr6 99892695 99892920 -82522322 + L1MC4a LINE L1 5607 5834 -1974 2436 83 0 0 chr6 99892920 99893220 -82522022 + AluSq SINE Alu 1 300 -13 288 297 57 57 chr6 99893220 99893294 -82521948 + L1MC4a LINE L1 5833 5906 -1902 1605 129 4 4 chr6 99894474 99894715 -82520527 - AluSg SINE Alu -6 304 64 1555 166 29 16 chr6 99894908 99895215 -82520027 - MSTA-int LTR MaLR -1336 315 5 2333 158 57 2 chr6 99895219 99895625 -82519617 - MSTA LTR MaLR 0 428 1 354 233 0 0 chr6 99895659 99895732 -82519510 + Tigger3(Golem) DNA MER2_type 10 82 -2947 29 47 0 0 chr6 99896340 99896383 -82518859 + AT_rich Low_complexity Low_complexity 1 43 0 360 317 93 12 chr6 99947062 99947321 -82467921 + L1ME3A LINE L1 5683 5962 -208 1504 40 5 25 chr6 99947691 99947942 -82467300 + L1PA4 LINE L1 5958 6204 0 574 181 9 0 chr6 99948756 99948872 -82466370 - L1MA4A LINE L1 0 6303 6187 457 321 180 16 chr6 99948961 99949266 -82465976 - L3 LINE CR1 -5 1572 1218 1490 51 0 0 chr6 99949774 99949950 -82465292 + AluY SINE Alu 131 306 -5 34 93 0 0 chr6 99950613 99950710 -82464532 + AT_rich Low_complexity Low_complexity 1 97 0 333 0 0 0 chr6 99950810 99950847 -82464395 + (CA)n Simple_repeat Simple_repeat 2 38 0 398 109 16 0 chr6 99952636 99952700 -82462542 - Tigger1 DNA MER2_type -1423 995 931 194 386 70 18 chr6 99952700 99952814 -82462428 + MIR SINE MIR 9 128 -134 38 81 0 0 chr6 99953299 99953386 -82461856 + AT_rich Low_complexity Low_complexity 1 87 0 341 281 126 18 chr6 99953386 99953553 -82461689 + MER102b DNA MER1_type 131 315 -26 602 299 108 56 chr6 99954036 99954167 -82461075 + L2 LINE L2 2366 2489 -824 2216 187 67 29 chr6 99954167 99954644 -82460598 - LTR42 LTR ERVL 0 495 1 602 299 108 56 chr6 99954644 99955399 -82459843 + L2 LINE L2 2489 3312 -1 3693 100 6 111 chr6 99955606 99956255 -82458987 + LTR12 LTR ERV1 1 581 -133 2134 254 113 19 chr6 99958636 99958920 -82456322 - L1M4 LINE L1 -2598 3548 3292 180 0 0 0 chr6 99958920 99958940 -82456302 + (TC)n Simple_repeat Simple_repeat 2 21 0 2134 254 113 19 chr6 99958940 99959638 -82455604 - L1M4 LINE L1 -2854 3292 2474 450 0 0 0 chr6 99959675 99959725 -82455517 + (TG)n Simple_repeat Simple_repeat 1 50 0 919 178 7 7 chr6 99959725 99959877 -82455365 - AluJb SINE Alu -33 279 128 2103 126 0 13 chr6 99960056 99960357 -82454885 - AluSx SINE Alu -15 297 1 2293 120 14 19 chr6 99960575 99960941 -82454301 - THE1C LTR MaLR -11 364 1 378 0 0 0 chr6 99961664 99961706 -82453536 + (CA)n Simple_repeat Simple_repeat 1 42 0 551 253 194 20 chr6 99963518 99963957 -82451285 + L1MEd LINE L1 700 1214 -4905 1055 235 34 99 chr6 99963957 99964340 -82450902 - MLT1A2 LTR MaLR 0 374 17 316 261 50 37 chr6 99964428 99964589 -82450653 + L1M2 LINE L1 2287 2449 -4400 1380 310 104 21 chr6 99964589 99964944 -82450298 - L2 LINE L2 -282 3031 2707 3177 158 28 23 chr6 99964944 99965544 -82449698 - LTR26 LTR ERV1 0 603 1 1380 310 104 21 chr6 99965544 99965842 -82449400 - L2 LINE L2 -606 2707 2334 417 248 68 0 chr6 99965870 99966003 -82449239 + LTR33 LTR ERVL 377 518 -3 194 62 31 0 chr6 99966221 99966253 -82448989 + (CTTTG)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr6 99966954 99966979 -82448263 + AT_rich Low_complexity Low_complexity 1 25 0 5469 39 3 0 chr6 99967627 99968289 -82446953 - L1PA4 LINE L1 0 6155 5492 6634 48 1 3 chr6 99968289 99969226 -82446016 + L1PA4 LINE L1 4554 5489 -665 21 57 0 0 chr6 99969261 99969296 -82445946 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr6 99969349 99969375 -82445867 + AT_rich Low_complexity Low_complexity 1 26 0 2239 144 28 0 chr6 99969970 99970324 -82444918 - THE1B LTR MaLR 0 364 1 8432 154 38 70 chr6 99970324 99971957 -82443285 - THE1B-int LTR MaLR 0 1580 1 2371 129 20 0 chr6 99971957 99972314 -82442928 - THE1B LTR MaLR 0 364 1 1414 163 40 9 chr6 99972471 99972837 -82442405 - L1PA13 LINE L1 -444 5724 5201 3029 116 22 0 chr6 99972837 99973293 -82441949 + L1PA13 LINE L1 5696 6161 -2 1895 204 21 3 chr6 99974363 99974697 -82440545 + MSTB LTR MaLR 1 340 -86 610 195 13 39 chr6 99975159 99975313 -82439929 + pTR5 LTR ERV1 741 890 -1548 * 2465 150 66 51 chr6 99975295 99975897 -82439345 + pTR5 LTR ERV1 1088 2020 -418 331 263 10 0 chr6 99975902 99976001 -82439241 + LTR30 LTR ERV1 544 643 -79 1321 99 1 5 chr6 99976001 99976196 -82439046 + pTR5 LTR ERV1 67 393 -2045 29 28 0 0 chr6 99976756 99976792 -82438450 + AT_rich Low_complexity Low_complexity 1 36 0 194 103 0 51 chr6 99978016 99978055 -82437187 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 312 133 0 0 chr6 99978625 99978685 -82436557 + (CA)n Simple_repeat Simple_repeat 1 60 0 4783 39 0 3 chr6 99979546 99980139 -82435103 - L1P LINE L1 -1045 5101 4511 7222 44 2 6 chr6 99980139 99981152 -82434090 + L1PA5 LINE L1 5145 6154 0 36 62 0 0 chr6 99981350 99981414 -82433828 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr6 99981426 99981456 -82433786 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 0 chr6 99981840 99981877 -82433365 + AT_rich Low_complexity Low_complexity 1 37 0 231 322 92 13 chr6 99982994 99983146 -82432096 - MIR SINE MIR -25 237 74 27 49 0 0 chr6 99983474 99983515 -82431727 + AT_rich Low_complexity Low_complexity 1 41 0 225 275 33 11 chr6 99984085 99984176 -82431066 - MIR SINE MIR -64 198 106 187 262 0 0 chr6 99984446 99984488 -82430754 + L2 LINE L2 3267 3308 -5 531 344 90 42 chr6 99984954 99985567 -82429675 + L2 LINE L2 1864 2505 -809 270 0 0 0 chr6 99986238 99986268 -82428974 + (A)n Simple_repeat Simple_repeat 1 30 0 374 174 17 23 chr6 99986514 99986686 -82428556 + (TA)n Simple_repeat Simple_repeat 2 172 0 186 298 0 0 chr6 99989406 99989463 -82425779 - L2 LINE L2 -974 2340 2284 3303 111 6 2 chr6 99990205 99990693 -82424549 - L1PA13 LINE L1 -348 5815 5326 2480 93 0 0 chr6 99990670 99991014 -82424228 + L1PA13 LINE L1 5818 6161 -2 * 21 71 0 0 chr6 99991762 99991804 -82423438 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr6 99992390 99992412 -82422830 + AT_rich Low_complexity Low_complexity 1 22 0 10201 146 24 8 chr6 99992740 99995069 -82420173 - Tigger1 DNA MER2_type -1 2417 1 198 0 0 0 chr6 99995111 99995133 -82420109 + (TC)n Simple_repeat Simple_repeat 2 23 0 266 306 48 63 chr6 99995142 99995348 -82419894 - MIR SINE MIR -58 204 2 1925 164 3 0 chr6 99996623 99996934 -82418308 - AluSx SINE Alu 0 312 1 204 323 11 11 chr6 99997064 99997157 -82418085 + CT-rich Low_complexity Low_complexity 1 93 0 363 287 0 11 chr6 99997230 99997324 -82417918 + MLT1H LTR MaLR 82 174 -375 817 207 48 27 chr6 99997344 99997532 -82417710 - MER20 DNA MER1_type -21 198 7 2149 110 0 0 chr6 99997558 99997849 -82417393 + AluSc SINE Alu 16 306 -3 348 303 150 39 chr6 99997882 99998116 -82417126 + MLT1H LTR MaLR 233 492 -57 483 306 25 19 chr6 99998224 99998384 -82416858 + MIR SINE MIR 1 161 -101 2292 100 3 0 chr6 99998549 99998881 -82416361 + AluSx SINE Alu 2 334 0 24 32 0 0 chr6 100000577 100000608 -82414634 + AT_rich Low_complexity Low_complexity 1 31 0 182 36 0 36 chr6 100000706 100000734 -82414508 + (CTTAT)n Simple_repeat Simple_repeat 2 28 0 182 364 70 21 chr6 100000839 100000982 -82414260 + L2 LINE L2 2935 3084 -188 193 342 42 17 chr6 100001421 100001541 -82413701 - MIR SINE MIR -54 208 86 5496 168 20 11 chr6 100002703 100004057 -82411185 + L1PA16 LINE L1 4781 6157 -9 1330 187 13 0 chr6 100004071 100004306 -82410936 + Tigger1 DNA MER2_type 66 303 -2115 946 221 36 92 chr6 100006985 100007294 -82407948 + L1MC4 LINE L1 7559 7847 -195 1990 120 7 3 chr6 100007294 100007586 -82407656 - AluSc SINE Alu -16 293 1 946 221 36 92 chr6 100007586 100007634 -82407608 + L1MC4 LINE L1 7847 7896 -146 1447 204 3 32 chr6 100007714 100008027 -82407215 - AluJo SINE Alu -8 304 1 1993 117 0 0 chr6 100008231 100008552 -82406690 - AluY SINE Alu 0 321 1 512 265 0 0 chr6 100008958 100009075 -82406167 + Tigger5 DNA MER2_type 1 117 -2206 * 681 126 0 213 chr6 100009067 100009274 -82405968 + Tigger5 DNA MER2_type 2153 2315 -8 6387 190 79 12 chr6 100009442 100011308 -82403934 + L1MA3 LINE L1 4297 6305 0 239 307 11 0 chr6 100011666 100011754 -82403488 - L1ME LINE L1 -356 5765 5677 431 297 101 74 chr6 100013398 100013633 -82401609 - L1ME LINE L1 -1923 4223 3969 3767 139 24 68 chr6 100013633 100014454 -82400788 - LTR1 LTR ERV1 0 785 1 431 297 101 74 chr6 100014454 100014653 -82400589 - L1ME LINE L1 -2177 3969 3777 306 0 0 0 chr6 100015073 100015107 -82400135 + (TG)n Simple_repeat Simple_repeat 1 34 0 376 153 0 135 chr6 100015116 100015227 -82400015 - L1MC/D LINE L1 -816 5528 5433 2936 266 69 26 chr6 100016308 100017529 -82397713 + L1MEc LINE L1 37 1184 -4929 23 0 0 0 chr6 100018288 100018311 -82396931 + AT_rich Low_complexity Low_complexity 1 23 0 267 300 14 0 chr6 100020259 100020329 -82394913 - L2 LINE L2 -1 3271 3201 28 71 0 0 chr6 100021261 100021317 -82393925 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr6 100024170 100024191 -82391051 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 100025459 100025483 -82389759 + AT_rich Low_complexity Low_complexity 1 24 0 366 23 0 0 chr6 100025607 100025650 -82389592 + (GA)n Simple_repeat Simple_repeat 2 44 0 32 75 0 0 chr6 100026672 100026739 -82388503 + AT_rich Low_complexity Low_complexity 1 67 0 325 332 153 0 chr6 100027104 100027300 -82387942 - HAL1 LINE L1 -596 1911 1686 415 352 44 31 chr6 100027356 100027583 -82387659 - HAL1 LINE L1 -964 1543 1314 2501 174 25 80 chr6 100027585 100028213 -82387029 - L1MB3 LINE L1 -38 6145 5552 380 149 30 0 chr6 100028213 100028280 -82386962 + MLT1E1 LTR MaLR 584 652 -2 2062 104 0 0 chr6 100028627 100028895 -82386347 + AluSx SINE Alu 29 296 -16 7773 14 0 0 chr6 100028996 100030037 -82385205 - L1PA2 LINE L1 -3 6152 5110 8944 26 0 4 chr6 100030037 100031101 -82384141 + L1PA2 LINE L1 4046 5105 -1041 336 289 13 6 chr6 100031288 100031444 -82383798 + (TA)n Simple_repeat Simple_repeat 2 158 0 299 133 0 33 chr6 100031463 100031523 -82383719 + (TATG)n Simple_repeat Simple_repeat 2 59 0 627 242 113 19 chr6 100031530 100031788 -82383454 - MER58B DNA MER1_type 0 341 10 25 0 0 0 chr6 100031816 100031841 -82383401 + AT_rich Low_complexity Low_complexity 1 25 0 391 249 91 18 chr6 100031855 100032020 -82383222 - L1ME3A LINE L1 -264 5906 5730 337 317 112 45 chr6 100032020 100032288 -82382954 - HAL1 LINE L1 -2206 301 16 328 297 45 20 chr6 100032384 100032586 -82382656 + L1M4 LINE L1 17 223 -6319 2310 244 16 40 chr6 100033264 100033960 -82381282 + L1MB7 LINE L1 5493 6171 -13 194 240 0 20 chr6 100034080 100034130 -82381112 + MIR SINE MIR 82 130 -78 233 118 0 0 chr6 100035087 100035121 -82380121 + (T)n Simple_repeat Simple_repeat 1 34 0 718 83 9 0 chr6 100035121 100035229 -82380013 - AluY SINE Alu -64 247 139 27 49 0 0 chr6 100036097 100036138 -82379104 + AT_rich Low_complexity Low_complexity 1 41 0 263 168 59 20 chr6 100036519 100036620 -82378622 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 220 351 27 0 chr6 100036802 100036876 -82378366 + MIR SINE MIR 78 153 -55 1757 142 36 8 chr6 100038845 100039260 -82375982 + LTR32 LTR ERVL 16 471 0 1637 184 0 0 chr6 100039580 100039863 -82375379 - AluJo SINE Alu -29 283 1 337 380 8 0 chr6 100039936 100040065 -82375177 - MIR SINE MIR -88 174 45 608 259 126 51 chr6 100040539 100040989 -82374253 - LTR33A LTR ERVL -23 500 1 37 52 0 0 chr6 100041137 100041195 -82374047 + AT_rich Low_complexity Low_complexity 1 58 0 252 0 0 0 chr6 100041990 100042018 -82373224 + (TG)n Simple_repeat Simple_repeat 1 28 0 1276 172 4 97 chr6 100042018 100042286 -82372956 - AluJb SINE Alu -68 244 2 307 350 51 34 chr6 100043215 100043392 -82371850 - L1ME3A LINE L1 -30 6140 5961 1084 220 42 92 chr6 100043446 100043991 -82371251 - L1MC5 LINE L1 -426 7535 7018 228 342 175 17 chr6 100044787 100045021 -82370221 - L2 LINE L2 -493 2821 2551 212 356 144 15 chr6 100045442 100045574 -82369668 - MIR SINE MIR -58 204 56 207 271 0 31 chr6 100046341 100046437 -82368805 + CT-rich Low_complexity Low_complexity 2 94 0 370 233 105 0 chr6 100046483 100046569 -82368673 + MLT1K LTR MaLR 79 173 -415 253 355 6 23 chr6 100046599 100046768 -82368474 + MIR SINE MIR 5 262 0 291 241 52 0 chr6 100046853 100046911 -82368331 + MLT1K LTR MaLR 326 386 -202 930 148 89 10 chr6 100046938 100047145 -82368097 - THE1C LTR MaLR 0 375 188 4164 109 73 29 chr6 100047153 100047833 -82367409 - THE1C-int LTR MaLR -870 710 1 2044 122 73 14 chr6 100047833 100048187 -82367055 - THE1C LTR MaLR 0 375 1 320 228 130 11 chr6 100048197 100048289 -82366953 + MLT1K LTR MaLR 436 538 -50 34 94 0 0 chr6 100048359 100048444 -82366798 + AT_rich Low_complexity Low_complexity 1 85 0 524 347 83 74 chr6 100049180 100050117 -82365125 - HAL1 LINE L1 -586 1921 976 2670 14 0 0 chr6 100050363 100050660 -82364582 + AluYa5 SINE Alu 1 297 -14 521 289 132 10 chr6 100050823 100051020 -82364222 + MIR SINE MIR 32 252 -10 23 33 0 0 chr6 100051901 100051931 -82363311 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr6 100052331 100052351 -82362891 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr6 100052863 100052885 -82362357 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 100053774 100053801 -82361441 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr6 100053888 100053909 -82361333 + AT_rich Low_complexity Low_complexity 1 21 0 2360 66 0 35 chr6 100054588 100054907 -82360335 - AluY SINE Alu -3 308 1 357 346 26 0 chr6 100055136 100055292 -82359950 + MIR SINE MIR 83 242 -20 577 45 34 0 chr6 100055311 100055399 -82359843 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 24 0 0 0 chr6 100056559 100056583 -82358659 + AT_rich Low_complexity Low_complexity 1 24 0 355 171 57 0 chr6 100056726 100056796 -82358446 - L1M4 LINE L1 -620 5558 5485 2070 103 4 4 chr6 100056796 100057112 -82358130 - AluSq SINE Alu 0 317 2 1203 255 67 87 chr6 100057114 100057874 -82357368 - L1M4 LINE L1 -1957 4189 3445 245 275 14 0 chr6 100058202 100058271 -82356971 - HAL1b LINE L1 -92 1256 1187 257 309 37 19 chr6 100058273 100058435 -82356807 - L1MC4a LINE L1 -1877 5931 5767 5388 199 36 3 chr6 100058913 100060122 -82355120 + L1PB4 LINE L1 4080 5328 -818 339 182 26 13 chr6 100060122 100060199 -82355043 + AluSp/q SINE Alu 226 303 0 306 71 0 0 chr6 100060202 100060244 -82354998 + L1PB4 LINE L1 5326 5367 -799 1618 165 8 0 chr6 100060252 100060507 -82354735 + AluSx SINE Alu 11 267 -45 973 51 0 22 chr6 100060544 100060682 -82354560 + (GAAA)n Simple_repeat Simple_repeat 3 137 0 4677 150 6 21 chr6 100060689 100061510 -82353732 + L1PB4 LINE L1 5345 6153 -3 236 311 107 33 chr6 100061524 100061646 -82353596 + L2 LINE L2 3182 3312 -1 22 0 0 0 chr6 100061745 100061767 -82353475 + AT_rich Low_complexity Low_complexity 1 22 0 641 197 59 67 chr6 100062599 100062838 -82352404 - Charlie5 DNA MER1_type 0 2622 2386 450 365 79 6 chr6 100064311 100064640 -82350602 + L2 LINE L2 2420 2772 -542 373 269 131 8 chr6 100065008 100065138 -82350104 + L2 LINE L2 3168 3313 0 462 138 69 0 chr6 100066500 100066587 -82348655 - AluSg/x SINE Alu -5 305 213 795 232 104 83 chr6 100066924 100067299 -82347943 - MLT1C LTR MaLR -7 460 1 580 210 59 0 chr6 100067331 100067450 -82347792 + FLAM_C SINE Alu 1 126 -17 318 114 43 0 chr6 100067451 100067521 -82347721 + (TA)n Simple_repeat Simple_repeat 1 73 0 288 120 0 0 chr6 100067521 100067571 -82347671 + (TG)n Simple_repeat Simple_repeat 1 50 0 900 201 0 0 chr6 100067571 100067730 -82347512 + AluJb SINE Alu 147 305 -7 202 189 0 0 chr6 100068353 100068390 -82346852 + GA-rich Low_complexity Low_complexity 3 39 0 192 208 14 139 chr6 100069017 100069089 -82346153 - MIR SINE MIR -80 182 120 30 0 0 0 chr6 100069505 100069535 -82345707 + AT_rich Low_complexity Low_complexity 1 30 0 378 323 10 0 chr6 100070720 100070816 -82344426 + L2 LINE L2 3176 3272 0 192 323 0 86 chr6 100072388 100072481 -82342761 - L2 LINE L2 0 3272 3188 333 298 72 75 chr6 100072615 100072894 -82342348 - L3 LINE CR1 -250 1327 1050 27 87 0 0 chr6 100073446 100073515 -82341727 + AT_rich Low_complexity Low_complexity 1 69 0 23 33 0 0 chr6 100073730 100073760 -82341482 + AT_rich Low_complexity Low_complexity 1 30 0 227 253 53 11 chr6 100074334 100074429 -82340813 - HAL1 LINE L1 -899 1608 1510 824 330 107 54 chr6 100074586 100075131 -82340111 - L1MEd LINE L1 -4880 1239 639 20030 36 0 2 chr6 100075131 100078352 -82336890 - L1PA4 LINE L1 -1 6154 2938 824 330 107 54 chr6 100078352 100078579 -82336663 - L1MEd LINE L1 -5480 639 426 24 32 0 0 chr6 100080577 100080608 -82334634 + AT_rich Low_complexity Low_complexity 1 31 0 204 256 0 0 chr6 100081404 100081443 -82333799 - L2 LINE L2 -9 3304 3266 48 32 0 0 chr6 100082391 100082453 -82332789 + AT_rich Low_complexity Low_complexity 1 62 0 416 289 235 0 chr6 100082919 100083085 -82332157 - MIR SINE MIR -21 241 37 227 177 24 97 chr6 100083117 100083133 -82332109 - L1MA7 LINE L1 0 6291 6276 7288 260 70 26 chr6 100083133 100085627 -82329615 - L1ME1 LINE L1 -25 6421 3715 1836 130 40 13 chr6 100085627 100085927 -82329315 - AluSg SINE Alu -2 308 1 7288 260 70 26 chr6 100085927 100087212 -82328030 - L1ME1 LINE L1 -2731 3715 2488 368 252 49 14 chr6 100087217 100087360 -82327882 + L1MEc LINE L1 2028 2175 -4221 450 257 115 9 chr6 100087370 100087588 -82327654 - L1ME1 LINE L1 -4108 2499 2259 922 288 38 47 chr6 100087644 100088242 -82327000 - L1ME1 LINE L1 -4202 2225 1374 344 316 57 20 chr6 100088251 100088495 -82326747 - L1MEc LINE L1 -5002 1394 1142 2546 264 79 21 chr6 100088500 100089460 -82325782 - L1MEc LINE L1 -5344 1052 37 877 244 132 65 chr6 100089472 100089507 -82325735 - MLT2B1 LTR ERVL -5 515 484 276 91 0 0 chr6 100089507 100089551 -82325691 + (TG)n Simple_repeat Simple_repeat 1 44 0 877 244 132 65 chr6 100089551 100089933 -82325309 - MLT2B1 LTR ERVL -36 484 70 22 0 0 0 chr6 100090864 100090886 -82324356 + AT_rich Low_complexity Low_complexity 1 22 0 239 290 0 10 chr6 100091519 100091619 -82323623 + (TTTA)n Simple_repeat Simple_repeat 4 102 0 180 0 0 0 chr6 100094418 100094438 -82320804 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 191 293 0 35 chr6 100096596 100096654 -82318588 - L2 LINE L2 -2 3311 3256 479 253 35 11 chr6 100097144 100097318 -82317924 + MER5B DNA MER1_type 1 178 0 277 309 12 12 chr6 100098315 100098396 -82316846 - L2 LINE L2 -8 3264 3184 26 30 0 0 chr6 100099089 100099122 -82316120 + AT_rich Low_complexity Low_complexity 1 33 0 443 258 100 48 chr6 100100814 100101105 -82314137 - HAL1 LINE L1 -801 1706 1401 410 315 45 45 chr6 100101201 100101423 -82313819 - L1MEd LINE L1 -4958 1161 940 204 200 0 0 chr6 100101774 100101819 -82313423 + (TA)n Simple_repeat Simple_repeat 1 45 0 358 348 107 6 chr6 100103199 100103377 -82311865 + MIR SINE MIR 3 198 -64 206 300 57 0 chr6 100103508 100103578 -82311664 + L3b LINE CR1 1424 1497 -86 24 0 0 0 chr6 100105097 100105121 -82310121 + AT_rich Low_complexity Low_complexity 1 24 0 279 0 0 0 chr6 100106160 100106191 -82309051 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr6 100106478 100106499 -82308743 + AT_rich Low_complexity Low_complexity 1 21 0 725 86 78 0 chr6 100106988 100107104 -82308138 - L1PA13 LINE L1 -13 6150 6026 273 289 10 41 chr6 100108266 100108363 -82306879 + L2 LINE L2 2991 3084 -188 6443 77 24 1 chr6 100108706 100109693 -82305549 + L1PA8 LINE L1 5162 6168 -4 209 294 50 34 chr6 100110481 100110600 -82304642 + L2 LINE L2 2916 3036 -236 192 111 0 0 chr6 100110827 100110863 -82304379 + (A)n Simple_repeat Simple_repeat 1 36 0 420 198 12 0 chr6 100110863 100110944 -82304298 - MLT1C LTR MaLR -376 91 10 1220 88 109 10 chr6 100161643 100161836 -82253406 + MSTA LTR MaLR 217 428 0 2562 204 46 58 chr6 100161885 100162690 -82252552 + L1M4 LINE L1 3592 4386 -1760 925 182 33 23 chr6 100162790 100163004 -82252238 - MER33 DNA MER1_type -259 65 1 530 252 142 0 chr6 100164625 100164702 -82250540 - MER58C DNA MER1_type -2243 177 112 1749 156 0 41 chr6 100164702 100165016 -82250226 + AluJo SINE Alu 1 301 -11 530 252 142 0 chr6 100165016 100165093 -82250149 - MER58C DNA MER1_type -2308 112 1 1015 197 24 28 chr6 100167033 100167351 -82247891 + Ricksha DNA DNA 2984 3254 -13 1113 202 105 68 chr6 100167447 100167689 -82247553 - MLT1A1 LTR MaLR 0 365 105 2763 97 20 56 chr6 100167689 100168093 -82247149 + MSTA LTR MaLR 1 389 -39 2505 74 0 6 chr6 100168093 100168404 -82246838 - AluSc SINE Alu 0 309 1 2763 97 20 56 chr6 100168404 100168443 -82246799 + MSTA LTR MaLR 389 428 0 1113 202 105 68 chr6 100168443 100168552 -82246690 - MLT1A1 LTR MaLR -260 105 1 841 179 0 37 chr6 100168561 100168723 -82246519 - MLT1E LTR MaLR -8 585 430 912 460 61 4 chr6 100168723 100169001 -82246241 + AluSc SINE Alu 1 294 -5 2725 146 60 21 chr6 100169001 100169515 -82245727 - L1MC1 LINE L1 -70 6263 5730 461 333 201 33 chr6 100169618 100170251 -82244991 + L2 LINE L2 1943 2760 -554 2047 123 3 25 chr6 100170251 100170568 -82244674 + AluSx SINE Alu 1 310 -2 461 333 201 33 chr6 100170568 100170794 -82244448 + L2 LINE L2 2760 2947 -367 180 0 0 0 chr6 100171518 100171538 -82243704 + (CA)n Simple_repeat Simple_repeat 2 21 0 2064 122 0 13 chr6 100171917 100172228 -82243014 + AluSc SINE Alu 1 307 -2 2158 101 0 7 chr6 100173135 100173432 -82241810 + AluSg1 SINE Alu 1 295 -14 404 262 24 0 chr6 100173439 100173574 -82241668 + L1MB8 LINE L1 5721 5859 -319 621 167 28 21 chr6 100173612 100173756 -82241486 + L1MB8 LINE L1 6034 6178 0 23 0 0 0 chr6 100174140 100174163 -82241079 + AT_rich Low_complexity Low_complexity 1 23 0 6807 55 18 5 chr6 100175405 100176399 -82238843 - L1PA7 LINE L1 0 6154 5177 1631 77 5 0 chr6 100176401 100176623 -82238619 - L1PA7 LINE L1 -4066 2080 1858 23 68 0 0 chr6 100176955 100176999 -82238243 + AT_rich Low_complexity Low_complexity 1 44 0 1025 250 86 19 chr6 100177330 100177842 -82237400 - MER114 LTR ERV -3 645 100 527 262 187 82 chr6 100178348 100178812 -82236430 - MLT1G1 LTR MaLR -56 511 1 803 292 306 23 chr6 100179389 100180229 -82235013 - L2 LINE L2 -966 2348 1271 362 301 115 6 chr6 100180421 100180577 -82234665 - MIR SINE MIR -21 241 69 398 305 115 32 chr6 100182710 100183084 -82232158 - MLT1I LTR MaLR 0 409 5 21 57 0 0 chr6 100183962 100183997 -82231245 + AT_rich Low_complexity Low_complexity 1 35 0 240 233 12 12 chr6 100184814 100184900 -82230342 + (TA)n Simple_repeat Simple_repeat 2 87 0 431 100 14 0 chr6 100185054 100185124 -82230118 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 4662 208 26 11 chr6 100185629 100186620 -82228622 + L1MC1 LINE L1 5322 6327 -6 263 306 0 9 chr6 100186664 100186775 -82228467 + L1ME4a LINE L1 5474 5583 -538 766 310 16 4 chr6 100186775 100187017 -82228225 - MIR SINE MIR -1 261 17 528 288 46 8 chr6 100187113 100187353 -82227889 + L1ME4a LINE L1 5678 5926 -195 188 244 260 31 chr6 100188812 100188939 -82226303 - L2 LINE L2 0 3313 3158 235 291 8 33 chr6 100189558 100189765 -82225477 + GA-rich Low_complexity Low_complexity 1 201 0 242 268 57 84 chr6 100190099 100190468 -82224774 - L1ME LINE L1 -238 5883 5525 21 36 0 0 chr6 100191309 100191337 -82223905 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr6 100191867 100191902 -82223340 + AT_rich Low_complexity Low_complexity 1 35 0 269 276 67 19 chr6 100194215 100194320 -82220922 + L2 LINE L2 3162 3271 -1 1725 209 40 10 chr6 100194583 100194985 -82220257 - MLT2D LTR ERVL 0 414 1 22 56 0 0 chr6 100195431 100195467 -82219775 + AT_rich Low_complexity Low_complexity 1 36 0 597 228 184 6 chr6 100195528 100195686 -82219556 + MER5A DNA MER1_type 4 189 0 261 324 103 7 chr6 100196171 100196316 -82218926 + L2 LINE L2 3145 3303 -10 425 352 0 6 chr6 100198789 100198948 -82216294 - MIR SINE MIR -104 158 1 1918 128 84 6 chr6 100199060 100199380 -82215862 + MER61C LTR ERV1 86 430 -4 248 379 136 6 chr6 100199486 100199663 -82215579 - L3 LINE CR1 -811 766 567 26 74 0 0 chr6 100199866 100199920 -82215322 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr6 100200386 100200407 -82214835 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 100201567 100201594 -82213648 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr6 100203229 100203250 -82211992 + AT_rich Low_complexity Low_complexity 1 21 0 1255 240 82 126 chr6 100204625 100205316 -82209926 + L1MC4a LINE L1 6139 6770 -1038 219 69 0 0 chr6 100205316 100205345 -82209897 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1255 240 82 126 chr6 100205345 100205709 -82209533 + L1MC4a LINE L1 6770 7148 -660 613 174 60 13 chr6 100206322 100206471 -82208771 - MER34 LTR ERV1 -6 536 381 2190 184 90 5 chr6 100206513 100206947 -82208295 - MER39 LTR ERV1 -236 471 1 21 36 0 0 chr6 100208139 100208167 -82207075 + AT_rich Low_complexity Low_complexity 1 28 0 862 258 37 18 chr6 100208398 100208752 -82206490 + L1ME4a LINE L1 5525 5883 -238 32 43 0 0 chr6 100208929 100208975 -82206267 + AT_rich Low_complexity Low_complexity 1 46 0 1455 245 59 3 chr6 100210461 100210836 -82204406 - MSTD LTR MaLR 0 396 1 2160 154 11 14 chr6 100211550 100211913 -82203329 + THE1B LTR MaLR 1 362 -2 3269 104 10 0 chr6 100211915 100212403 -82202839 + THE1B-int LTR MaLR 1 493 -1087 530 143 0 0 chr6 100212404 100212481 -82202761 + AluSg1 SINE Alu 21 97 -212 564 130 0 0 chr6 100212524 100212601 -82202641 + AluSg1 SINE Alu 21 97 -212 1860 172 0 16 chr6 100212604 100212644 -82202598 + THE1B-int LTR MaLR 455 494 -1086 1842 158 11 0 chr6 100212644 100212928 -82202314 + AluSg SINE Alu 21 307 -3 1860 172 0 16 chr6 100212928 100213206 -82202036 + THE1B-int LTR MaLR 494 768 -812 2575 21 0 0 chr6 100213306 100213597 -82201645 + AluYb8 SINE Alu 27 317 -1 310 287 49 94 chr6 100215210 100215433 -82199809 + L1MC4 LINE L1 7829 8041 -1 22 0 0 0 chr6 100216194 100216216 -82199026 + AT_rich Low_complexity Low_complexity 1 22 0 6738 145 49 16 chr6 100216349 100217587 -82197655 + pTR5 LTR ERV1 743 2021 -417 308 284 10 0 chr6 100217588 100217690 -82197552 + LTR30 LTR ERV1 541 643 -79 1602 120 25 4 chr6 100217692 100217933 -82197309 + pTR5 LTR ERV1 172 417 -2021 26 50 0 0 chr6 100218007 100218047 -82197195 + AT_rich Low_complexity Low_complexity 1 40 0 4307 14 0 0 chr6 100218489 100218983 -82196259 - L1PA2 LINE L1 -1 6154 5661 27 0 0 0 chr6 100219110 100219137 -82196105 + AT_rich Low_complexity Low_complexity 1 27 0 270 203 16 16 chr6 100219496 100219560 -82195682 + MIR SINE MIR 186 249 -13 24 32 0 0 chr6 100220153 100220184 -82195058 + AT_rich Low_complexity Low_complexity 1 31 0 211 222 37 12 chr6 100220297 100220378 -82194864 + (TA)n Simple_repeat Simple_repeat 1 83 0 926 228 68 17 chr6 100220627 100220864 -82194378 + MLT1C LTR MaLR 50 298 -169 1743 104 42 117 chr6 100220921 100221324 -82193918 + THE1C LTR MaLR 1 373 -2 345 298 135 7 chr6 100221449 100221590 -82193652 + MLT2F LTR ERVL 89 247 -416 695 195 12 59 chr6 100221592 100221761 -82193481 + ERVL LTR ERVL 2044 2204 -3560 2847 76 0 13 chr6 100221894 100222287 -82192955 + L1PA13 LINE L1 5771 6158 -5 21 0 0 0 chr6 100222288 100222309 -82192933 + AT_rich Low_complexity Low_complexity 1 21 0 329 326 94 0 chr6 100222431 100222719 -82192523 + L1ME3A LINE L1 4634 4948 -1198 248 271 19 97 chr6 100222739 100222997 -82192245 + L1ME3A LINE L1 5042 5279 -867 198 0 0 0 chr6 100223033 100223055 -82192187 + (TAA)n Simple_repeat Simple_repeat 2 23 0 876 298 78 27 chr6 100223057 100223644 -82191598 + L1ME3A LINE L1 5330 5946 -224 204 341 0 78 chr6 100223725 100223892 -82191350 - L2 LINE L2 -1345 1969 1816 22 35 0 0 chr6 100224191 100224220 -82191022 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 100224472 100224497 -82190745 + AT_rich Low_complexity Low_complexity 1 25 0 317 270 111 44 chr6 100224515 100224767 -82190475 - HAL1 LINE L1 -812 1695 1427 315 359 57 26 chr6 100224790 100224982 -82190260 - L1MEd LINE L1 -4905 1214 1017 337 217 25 117 chr6 100225269 100225389 -82189853 - L2 LINE L2 -16 3297 3189 15703 148 26 21 chr6 100226161 100226788 -82188454 - Tigger4(Zombi) DNA MER2_type 0 2731 2109 1956 152 116 13 chr6 100226788 100227176 -82188066 - MSTA LTR MaLR 0 428 1 15703 148 26 21 chr6 100227176 100229260 -82185982 - Tigger4(Zombi) DNA MER2_type -622 2109 6 1019 234 119 27 chr6 100229430 100229985 -82185257 - MLT2F LTR ERVL -11 652 1 898 206 109 66 chr6 100230603 100230952 -82184290 - MLT1A1 LTR MaLR -1 364 1 26 30 0 0 chr6 100231092 100231125 -82184117 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr6 100231213 100231241 -82184001 + AT_rich Low_complexity Low_complexity 1 28 0 4721 96 4 1 chr6 100231399 100232076 -82183166 - L1PA13 LINE L1 -1 6162 5484 2279 138 5 8 chr6 100232211 100232582 -82182660 - L1PB1 LINE L1 0 6151 5782 234 220 0 17 chr6 100232585 100232644 -82182598 + (TA)n Simple_repeat Simple_repeat 1 58 0 318 239 0 22 chr6 100232645 100232737 -82182505 - L1MC4 LINE L1 -1339 6703 6614 1891 76 30 4 chr6 100232739 100233001 -82182241 - L1P5 LINE L1 -356 5795 5527 315 251 52 89 chr6 100233008 100233199 -82182043 - L1ME LINE L1 -339 5782 5599 24 53 0 0 chr6 100233297 100233335 -82181907 + AT_rich Low_complexity Low_complexity 1 38 0 2515 211 38 35 chr6 100233509 100234134 -82181108 - L1MB3 LINE L1 -9 6174 5548 250 267 44 22 chr6 100234495 100234585 -82180657 + L2 LINE L2 3218 3309 -4 3114 139 12 2 chr6 100235216 100235727 -82179515 - L1MA1 LINE L1 0 6302 5787 7608 86 6 17 chr6 100235727 100236810 -82178432 + MER11C LTR ERVK 1 1071 0 850 103 0 0 chr6 100237844 100237961 -82177281 + AluY SINE Alu 188 304 -7 237 329 84 26 chr6 100238203 100238358 -82176884 - MIR SINE MIR -98 164 1 1335 119 32 0 chr6 100239881 100240100 -82175142 - L1MA1 LINE L1 -121 6181 5956 503 270 0 24 chr6 100240262 100240388 -82174854 + L2 LINE L2 3188 3310 -3 2112 284 68 31 chr6 100240417 100241498 -82173744 + L1MC/D LINE L1 3278 4415 -1731 1246 216 9 90 chr6 100241498 100241832 -82173410 + AluJb SINE Alu 1 307 -5 2112 284 68 31 chr6 100241832 100242023 -82173219 + L1MC/D LINE L1 4415 4597 -1549 395 282 104 78 chr6 100242308 100242684 -82172558 + L1MC/D LINE L1 5258 5660 -516 1357 213 38 14 chr6 100243204 100243491 -82171751 - MLT1A1 LTR MaLR 0 365 72 276 27 0 0 chr6 100243501 100243538 -82171704 - L1PA3 LINE L1 -3 6152 6116 1462 268 34 71 chr6 100243742 100244294 -82170948 - MLT1E LTR MaLR 0 593 62 22 43 0 21 chr6 100244645 100244670 -82170572 + AT_rich Low_complexity Low_complexity 1 26 -20 2246 187 94 23 chr6 100244670 100245151 -82170091 + MLT2B2 LTR ERVL 1 515 0 22 43 0 21 chr6 100245151 100245172 -82170070 + AT_rich Low_complexity Low_complexity 26 46 0 24 0 0 0 chr6 100245355 100245379 -82169863 + AT_rich Low_complexity Low_complexity 1 24 0 199 330 96 11 chr6 100245663 100245757 -82169485 + L2 LINE L2 3162 3263 -9 240 242 32 0 chr6 100246246 100246308 -82168934 + (TATG)n Simple_repeat Simple_repeat 4 67 0 684 270 92 0 chr6 100246327 100246523 -82168719 - MIR SINE MIR -45 217 4 776 213 72 18 chr6 100248434 100248655 -82166587 + MARNA DNA Mariner 8 240 -346 268 367 64 16 chr6 100249067 100249255 -82165987 + L2 LINE L2 2571 2767 -547 496 311 181 45 chr6 100249914 100250339 -82164903 + MLT1G3 LTR MaLR 1 514 -41 238 328 124 16 chr6 100250750 100250936 -82164306 + LTR16C LTR ERVL 191 396 -95 1045 217 70 90 chr6 100251061 100251448 -82163794 + MLT1B LTR MaLR 1 379 -11 959 201 5 26 chr6 100252264 100252453 -82162789 - MLT1A2 LTR MaLR 0 374 190 646 272 25 12 chr6 100252519 100252681 -82162561 - MLT1A2 LTR MaLR -189 185 22 2056 134 57 20 chr6 100252794 100253145 -82162097 + THE1B LTR MaLR 1 364 0 5550 132 25 2 chr6 100253145 100253986 -82161256 + THE1B-int LTR MaLR 1 860 -720 * 13056 38 3 2 chr6 100253979 100255605 -82159637 - L1PA4 LINE L1 -1436 4710 3083 7389 30 0 10 chr6 100255605 100257093 -82158149 + L1PA4 LINE L1 4690 6168 0 1052 132 13 0 chr6 100257099 100257258 -82157984 + THE1B-int LTR MaLR 846 1006 -574 * 3472 71 0 17 chr6 100257253 100257715 -82157527 + THE1B-int LTR MaLR 1127 1580 0 1862 148 57 20 chr6 100257715 100258066 -82157176 + THE1B LTR MaLR 1 364 0 196 106 0 43 chr6 100258560 100258607 -82156635 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 270 359 109 0 chr6 100259310 100259466 -82155776 - MIR SINE MIR -36 226 54 2156 148 36 6 chr6 100261640 100262004 -82153238 - THE1C LTR MaLR 0 375 1 9295 124 32 45 chr6 100262004 100263604 -82151638 - THE1C-int LTR MaLR 0 1580 1 2406 132 8 0 chr6 100263604 100263976 -82151266 - THE1C LTR MaLR 0 375 1 37 69 0 0 chr6 100264113 100264185 -82151057 + AT_rich Low_complexity Low_complexity 1 72 0 408 353 82 18 chr6 100264474 100264644 -82150598 - L3b LINE CR1 -126 1457 1277 1955 178 5 22 chr6 100265297 100265667 -82149575 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr6 100266280 100266311 -82148931 + AT_rich Low_complexity Low_complexity 1 31 0 508 29 29 0 chr6 100267074 100267144 -82148098 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 225 180 0 0 chr6 100267562 100267612 -82147630 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1669 171 3 35 chr6 100268254 100268570 -82146672 - AluJb SINE Alu -6 306 1 30 0 0 0 chr6 100269866 100269896 -82145346 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr6 100270689 100270716 -82144526 + AT_rich Low_complexity Low_complexity 1 27 0 291 292 40 69 chr6 100270969 100271171 -82144071 - L1ME LINE L1 -297 5867 5672 300 294 67 83 chr6 100271278 100271458 -82143784 + L1MEd LINE L1 2 178 -5941 21 0 0 0 chr6 100271668 100271689 -82143553 + AT_rich Low_complexity Low_complexity 1 21 0 252 255 5 93 chr6 100272158 100272374 -82142868 + L1MEd LINE L1 895 1091 -5028 562 170 35 7 chr6 100272388 100272529 -82142713 + Charlie5 DNA MER1_type 2429 2573 -39 249 373 24 8 chr6 100272781 100272907 -82142335 + MIR3 SINE MIR 67 194 -14 231 36 0 0 chr6 100273593 100273621 -82141621 + (TA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr6 100274076 100274097 -82141145 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 100274453 100274485 -82140757 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 100275930 100275951 -82139291 + AT_rich Low_complexity Low_complexity 1 21 0 554 163 44 59 chr6 100276047 100276182 -82139060 + L1MB1 LINE L1 6036 6168 0 924 161 0 67 chr6 100276201 100276424 -82138818 + L1MB1 LINE L1 5196 5403 -743 610 272 2 1 chr6 100276429 100276598 -82138644 - MLT1A2 LTR MaLR 0 374 219 3352 175 29 24 chr6 100276598 100277296 -82137946 + L1MB1 LINE L1 5468 6168 0 206 81 27 0 chr6 100278596 100278633 -82136609 + (CA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr6 100278881 100278903 -82136339 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr6 100279078 100279123 -82136119 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr6 100279484 100279510 -82135732 + AT_rich Low_complexity Low_complexity 1 26 0 925 328 47 17 chr6 100279699 100280101 -82135141 - MLT1J LTR MaLR 0 511 98 1017 212 65 97 chr6 100281807 100282179 -82133063 - MLT1A1 LTR MaLR -5 360 1 350 380 85 15 chr6 100282190 100282651 -82132591 - L3 LINE CR1 -2 1575 1083 37149 95 7 8 chr6 100283461 100289611 -82125631 + L1PA6 LINE L1 11 6153 -1 21 36 0 0 chr6 100289724 100289752 -82125490 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 100290255 100290278 -82124964 + AT_rich Low_complexity Low_complexity 1 23 0 1335 134 40 200 chr6 100290954 100291400 -82123842 + THE1C LTR MaLR 1 375 0 200 274 0 0 chr6 100292312 100292363 -82122879 + GA-rich Low_complexity Low_complexity 4 54 0 36 0 0 0 chr6 100293311 100293347 -82121895 + AT_rich Low_complexity Low_complexity 1 36 0 645 320 44 16 chr6 100293952 100294339 -82120903 - L1MC/D LINE L1 -480 5762 5365 917 200 36 5 chr6 100294404 100294599 -82120643 - AluJo SINE Alu -25 287 87 227 188 158 61 chr6 100295036 100295201 -82120041 - L1M4 LINE L1 -3756 2390 2210 25 51 0 0 chr6 100296598 100296637 -82118605 + AT_rich Low_complexity Low_complexity 1 39 0 1456 188 10 108 chr6 100296951 100297034 -82118208 + MLT1B LTR MaLR 30 119 -271 2046 99 21 0 chr6 100297034 100297318 -82117924 + AluSc SINE Alu 5 294 -15 1456 188 10 108 chr6 100297318 100297634 -82117608 + MLT1B LTR MaLR 119 390 0 1990 117 0 14 chr6 100299311 100299594 -82115648 + AluSx SINE Alu 1 279 -33 198 0 0 0 chr6 100299595 100299617 -82115625 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 37 23 0 0 chr6 100299937 100299981 -82115261 + AT_rich Low_complexity Low_complexity 1 44 0 309 322 110 57 chr6 100300168 100300485 -82114757 - L1ME4a LINE L1 -260 5861 5528 5363 149 121 37 chr6 100300485 100301257 -82113985 + Tigger3b DNA MER2_type 1 707 -2321 2265 119 57 3 chr6 100301257 100301610 -82113632 + THE1C LTR MaLR 1 372 -3 5363 149 121 37 chr6 100301610 100301759 -82113483 + Tigger3b DNA MER2_type 707 842 -2186 4553 73 3 19 chr6 100301759 100302388 -82112854 + L1PA7 LINE L1 5532 6150 -4 5363 149 121 37 chr6 100302388 100302601 -82112641 + Tigger3b DNA MER2_type 842 1231 0 225 0 0 0 chr6 100303226 100303251 -82111991 + (TA)n Simple_repeat Simple_repeat 2 26 0 1884 133 0 4 chr6 100303251 100303530 -82111712 - AluSg SINE Alu -28 282 5 29 28 0 0 chr6 100304175 100304211 -82111031 + AT_rich Low_complexity Low_complexity 1 36 0 1184 276 84 48 chr6 100304430 100304852 -82110390 - L1MD3 LINE L1 -10 7985 7537 2309 74 10 0 chr6 100304852 100305148 -82110094 - AluY SINE Alu -12 299 1 1184 276 84 48 chr6 100305148 100305287 -82109955 - L1MD3 LINE L1 -458 7537 7404 2508 216 45 101 chr6 100305294 100306213 -82109029 - L1MC4a LINE L1 -818 6990 6124 21 57 0 0 chr6 100307111 100307146 -82108096 + AT_rich Low_complexity Low_complexity 1 35 0 732 243 12 0 chr6 100307729 100307902 -82107340 - MER5B DNA MER1_type -2 176 2 8891 239 38 20 chr6 100307980 100308835 -82106407 - L1PA16 LINE L1 -9 7595 6757 1638 156 95 20 chr6 100308835 100309182 -82106060 + THE1C LTR MaLR 1 373 -2 8891 239 38 20 chr6 100309182 100311570 -82103672 - L1PA16 LINE L1 -847 6757 4414 541 113 0 0 chr6 100311570 100311650 -82103592 - MADE1 DNA Mariner 0 80 1 8891 239 38 20 chr6 100311650 100312523 -82102719 - L1PA16 LINE L1 -3190 4414 3558 2077 104 14 0 chr6 100312523 100312820 -82102422 + AluY SINE Alu 1 301 -10 8891 239 38 20 chr6 100312820 100313417 -82101825 - L1PA16 LINE L1 -4046 3558 2973 222 37 0 0 chr6 100313417 100313444 -82101798 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8891 239 38 20 chr6 100313444 100313915 -82101327 - L1PA16 LINE L1 -4631 2973 2182 413 270 105 57 chr6 100314537 100314926 -82100316 - L1PA16 LINE L1 -7172 409 2 1071 217 37 80 chr6 100315119 100315584 -82099658 - LTR56 LTR ERV1 0 445 1 507 363 75 42 chr6 100317017 100317605 -82097637 - L2 LINE L2 0 3313 2696 24 53 0 0 chr6 100317625 100317663 -82097579 + AT_rich Low_complexity Low_complexity 1 38 0 363 277 56 77 chr6 100317917 100318112 -82097130 + MLT1J LTR MaLR 291 481 -30 198 0 0 0 chr6 100318477 100318499 -82096743 + (T)n Simple_repeat Simple_repeat 1 22 0 1478 108 10 5 chr6 100368787 100368991 -82046251 - AluSq SINE Alu -106 207 3 2078 113 0 0 chr6 100369565 100369858 -82045384 - AluSc SINE Alu -16 293 1 470 257 0 18 chr6 100369897 100370006 -82045236 - MIR SINE MIR -112 150 44 2152 96 0 23 chr6 100370022 100370324 -82044918 - AluSg SINE Alu -15 295 1 27 0 0 0 chr6 100371630 100371657 -82043585 + AT_rich Low_complexity Low_complexity 1 27 0 207 296 134 7 chr6 100371940 100372082 -82043160 - MIR SINE MIR -6 256 97 28 29 0 0 chr6 100372438 100372473 -82042769 + AT_rich Low_complexity Low_complexity 1 35 0 356 0 23 0 chr6 100373102 100373146 -82042096 + (CA)n Simple_repeat Simple_repeat 2 46 0 233 322 140 47 chr6 100375816 100376030 -82039212 + MIR SINE MIR 29 262 0 24 53 0 0 chr6 100376265 100376303 -82038939 + AT_rich Low_complexity Low_complexity 1 38 0 199 289 89 44 chr6 100376356 100376491 -82038751 + L2 LINE L2 3044 3184 -129 741 290 68 16 chr6 100376620 100376868 -82038374 - MIR SINE MIR -1 261 1 452 320 86 41 chr6 100377213 100377410 -82037832 + MIR SINE MIR 49 254 -8 260 303 35 41 chr6 100377564 100377709 -82037533 - L2 LINE L2 -77 3236 3093 193 350 122 20 chr6 100377848 100378045 -82037197 + L2 LINE L2 2297 2513 -801 681 338 75 64 chr6 100378115 100378772 -82036470 - L2 LINE L2 -498 2816 2153 852 277 59 12 chr6 100378789 100379042 -82036200 - LTR16C LTR ERVL -1 490 226 775 167 74 12 chr6 100379045 100379207 -82036035 - L1MA10 LINE L1 -7 6327 6156 1239 185 95 43 chr6 100379219 100379757 -82035485 + L1MB1 LINE L1 5430 6036 -132 4878 132 20 25 chr6 100379757 100380615 -82034627 - L1PA13 LINE L1 0 6163 5282 198 0 0 0 chr6 100380615 100380637 -82034605 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 4878 132 20 25 chr6 100380637 100381009 -82034233 - L1PA13 LINE L1 -881 5282 4910 1239 185 95 43 chr6 100381009 100381137 -82034105 + L1MB1 LINE L1 6036 6156 -12 435 154 8 103 chr6 100381360 100381477 -82033765 - MER53 DNA DNA -83 106 1 227 200 0 0 chr6 100382933 100382983 -82032259 + A-rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 100383090 100383115 -82032127 + AT_rich Low_complexity Low_complexity 1 25 0 2078 169 22 0 chr6 100383970 100384326 -82030916 + THE1B LTR MaLR 1 364 0 418 309 142 20 chr6 100384684 100385030 -82030212 + LTR33 LTR ERVL 121 508 -13 394 292 91 69 chr6 100385147 100385555 -82029687 - L1M4 LINE L1 -3528 2618 2202 479 255 138 22 chr6 100385565 100385796 -82029446 - MIR SINE MIR 0 262 5 39 22 0 0 chr6 100386013 100386059 -82029183 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr6 100386297 100386332 -82028910 + AT_rich Low_complexity Low_complexity 1 35 0 309 187 0 0 chr6 100386783 100386858 -82028384 + (TA)n Simple_repeat Simple_repeat 2 76 0 317 320 256 6 chr6 100388114 100388426 -82026816 - L2 LINE L2 -2234 1080 691 292 258 0 48 chr6 100389366 100389490 -82025752 - Charlie7 DNA MER1_type 0 2612 2495 685 279 61 0 chr6 100389624 100389789 -82025453 + MER58A DNA MER1_type 1 175 -49 888 199 47 0 chr6 100390818 100390989 -82024253 - MER58A DNA MER1_type -1 223 45 22 0 0 0 chr6 100392506 100392528 -82022714 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 100393081 100393101 -82022141 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2250 80 3 0 chr6 100393104 100393390 -82021852 - AluY SINE Alu -24 287 1 16565 172 25 43 chr6 100393426 100395964 -82019278 + L1MA1 LINE L1 16 2562 -5003 521 99 0 0 chr6 100395964 100396045 -82019197 - Alu SINE Alu -2 307 227 16565 172 25 43 chr6 100396045 100396734 -82018508 + L1MA1 LINE L1 2562 3262 -4303 1668 168 64 14 chr6 100396737 100397082 -82018160 + THE1C LTR MaLR 1 362 -13 8777 191 16 32 chr6 100397085 100399450 -82015792 + L1MA1 LINE L1 3260 5586 -1979 5050 145 34 16 chr6 100399448 100400764 -82014478 + L1MA1 LINE L1 5811 7179 -542 * 2150 119 0 3 chr6 100400764 100401066 -82014176 - AluSg SINE Alu -9 301 1 5050 145 34 16 chr6 100401066 100401619 -82013623 + L1MA1 LINE L1 7179 7721 0 197 260 174 9 chr6 100401971 100402087 -82013155 - MIR3 SINE MIR -16 192 58 276 143 0 0 chr6 100402195 100402251 -82012991 + (TG)n Simple_repeat Simple_repeat 1 56 0 349 310 125 74 chr6 100403818 100404321 -82010921 + MLT1H LTR MaLR 5 533 -16 882 156 11 6 chr6 100404630 100404809 -82010433 + CT-rich Low_complexity Low_complexity 1 180 0 285 29 0 0 chr6 100404810 100404844 -82010398 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 590 182 36 0 chr6 100404844 100404954 -82010288 - AluSg/x SINE Alu -22 288 175 1360 156 18 0 chr6 100404954 100405172 -82010070 - AluSq SINE Alu -91 222 1 1586 220 49 6 chr6 100405483 100405833 -82009409 + MLT1A1 LTR MaLR 1 365 0 1081 253 132 42 chr6 100406032 100406510 -82008732 + LTR33 LTR ERVL 1 521 0 22 70 0 0 chr6 100406658 100406701 -82008541 + AT_rich Low_complexity Low_complexity 1 43 0 315 322 70 43 chr6 100406806 100407063 -82008179 + HAL1b LINE L1 182 454 -894 1663 163 53 51 chr6 100407063 100407437 -82007805 + THE1C LTR MaLR 1 375 0 315 322 70 43 chr6 100407437 100407552 -82007690 + HAL1b LINE L1 454 564 -784 1947 145 0 14 chr6 100408257 100408554 -82006688 + AluSx SINE Alu 1 293 -19 300 260 29 0 chr6 100408796 100408900 -82006342 + (TA)n Simple_repeat Simple_repeat 2 108 0 380 289 101 64 chr6 100408902 100409498 -82005744 + L1M4 LINE L1 2652 3269 -2877 1283 308 141 23 chr6 100410048 100411012 -82004230 - L2 LINE L2 0 3313 2238 1983 107 36 0 chr6 100411495 100411776 -82003466 - AluSx SINE Alu -8 304 14 294 29 0 0 chr6 100412030 100412065 -82003177 + (TA)n Simple_repeat Simple_repeat 1 35 0 322 271 73 0 chr6 100413821 100413917 -82001325 + MIR SINE MIR 147 249 -13 23 33 0 0 chr6 100415012 100415042 -82000200 + AT_rich Low_complexity Low_complexity 1 30 0 229 264 138 58 chr6 100415262 100415349 -81999893 + L2 LINE L2 3187 3280 -33 1124 248 147 28 chr6 100415481 100415904 -81999338 - MLT1D LTR MaLR -2 503 31 250 349 126 13 chr6 100418516 100418906 -81996336 + L1MC/D LINE L1 5256 5689 -2119 185 182 0 45 chr6 100419023 100419089 -81996153 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 205 255 0 20 chr6 100419293 100419344 -81995898 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 57 0 0 chr6 100419380 100419415 -81995827 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr6 100419873 100419912 -81995330 + AT_rich Low_complexity Low_complexity 1 39 0 25 65 0 0 chr6 100420232 100420278 -81994964 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr6 100420458 100420487 -81994755 + AT_rich Low_complexity Low_complexity 1 29 0 354 279 88 7 chr6 100420535 100420682 -81994560 + MIR SINE MIR 104 262 0 208 236 18 0 chr6 100422741 100422851 -81992391 + GA-rich Low_complexity Low_complexity 2 113 0 290 297 250 7 chr6 100422869 100423017 -81992225 + MER5A DNA MER1_type 6 189 0 13141 192 71 8 chr6 100423844 100429346 -81985896 - L1PBa LINE L1 -1007 5855 6 401 313 52 0 chr6 100429405 100429539 -81985703 + MER5A DNA MER1_type 1 141 -48 213 323 63 70 chr6 100429437 100429595 -81985647 - MER5A DNA MER1_type -23 166 10 * 1106 194 27 143 chr6 100431565 100431978 -81983264 + MLT1A1 LTR MaLR 1 365 0 1402 193 48 78 chr6 100432069 100432443 -81982799 - MER89 LTR ERV1 0 559 197 509 146 22 0 chr6 100432415 100432504 -81982738 - MER89 LTR ERV1 -468 91 1 * 7183 186 44 60 chr6 100432663 100432694 -81982548 + LTR8A-int LTR ERV1 3717 3747 -2516 2064 134 23 0 chr6 100432694 100432873 -81982369 - AluSp SINE Alu 0 313 123 282 87 0 0 chr6 100432873 100432919 -81982323 + (TA)n Simple_repeat Simple_repeat 2 47 0 2064 134 23 0 chr6 100432919 100433045 -81982197 - AluSp SINE Alu -190 123 1 7183 186 44 60 chr6 100433045 100434003 -81981239 + LTR8A-int LTR ERV1 3747 4719 -1544 1792 164 7 13 chr6 100434003 100434302 -81980940 - AluJb SINE Alu -13 299 3 7183 186 44 60 chr6 100434302 100434458 -81980784 + LTR8A-int LTR ERV1 4719 4876 -1387 249 57 0 0 chr6 100434458 100434493 -81980749 + (TTG)n Simple_repeat Simple_repeat 3 37 0 7183 186 44 60 chr6 100434493 100435376 -81979866 + LTR8A-int LTR ERV1 4876 6184 -79 2645 25 0 6 chr6 100435376 100435690 -81979552 + AluYb8 SINE Alu 1 312 -6 7183 186 44 60 chr6 100435690 100435769 -81979473 + LTR8A-int LTR ERV1 6184 6263 0 2062 201 68 100 chr6 100435784 100436446 -81978796 + LTR8A LTR ERV1 34 674 -53 234 91 0 0 chr6 100436522 100436555 -81978687 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2887 160 7 0 chr6 100437080 100437530 -81977712 + MER1A DNA MER1_type 77 529 0 232 342 34 8 chr6 100438723 100438840 -81976402 + L1MC/D LINE L1 5705 5824 -1984 1909 136 7 0 chr6 100438926 100439247 -81975995 - AluSg SINE Alu 0 323 1 1661 241 85 62 chr6 100439480 100439769 -81975473 - L1ME2 LINE L1 -10 6223 5942 1567 131 80 75 chr6 100439769 100440142 -81975100 - THE1C LTR MaLR 0 375 1 1661 241 85 62 chr6 100440142 100440312 -81974930 - L1ME2 LINE L1 -291 5942 5777 399 41 0 0 chr6 100440312 100440361 -81974881 + (TA)n Simple_repeat Simple_repeat 2 50 0 1661 241 85 62 chr6 100440361 100440736 -81974506 - L1ME2 LINE L1 -456 5777 5372 264 59 0 0 chr6 100440739 100440773 -81974469 + (TA)n Simple_repeat Simple_repeat 2 35 0 1823 119 20 40 chr6 100440773 100441076 -81974166 - AluSq SINE Alu -16 297 1 1389 271 85 38 chr6 100441078 100442012 -81973230 - L1ME2 LINE L1 -872 5343 4366 367 259 13 25 chr6 100442261 100442419 -81972823 + (TA)n Simple_repeat Simple_repeat 1 156 0 26 0 0 0 chr6 100442540 100442566 -81972676 + AT_rich Low_complexity Low_complexity 1 26 0 1147 284 66 49 chr6 100443835 100444592 -81970650 - L1ME2 LINE L1 -4496 1900 1131 2306 142 45 45 chr6 100444594 100445017 -81970225 + Tigger2a DNA MER2_type 2 424 -10 1606 286 118 28 chr6 100445032 100446004 -81969238 - L1ME2 LINE L1 -5289 1107 48 4760 174 35 35 chr6 100446765 100447746 -81967496 + L1MC1 LINE L1 5352 6332 -1 27 0 0 0 chr6 100447750 100447777 -81967465 + AT_rich Low_complexity Low_complexity 1 27 0 208 292 85 31 chr6 100448116 100448246 -81966996 + MIR SINE MIR 120 256 -6 255 288 0 0 chr6 100448258 100448317 -81966925 + (CAT)n Simple_repeat Simple_repeat 2 60 0 2247 113 33 30 chr6 100449376 100449739 -81965503 - THE1B LTR MaLR 0 364 1 1390 225 180 31 chr6 100449839 100450288 -81964954 - MLT2B1 LTR ERVL 0 520 5 2604 112 5 3 chr6 100450288 100450662 -81964580 + THE1C LTR MaLR 1 375 0 9012 125 36 59 chr6 100450662 100452279 -81962963 + THE1C-int LTR MaLR 1 1580 0 2426 116 3 26 chr6 100452281 100452661 -81962581 + THE1C LTR MaLR 3 373 -2 1559 161 65 7 chr6 100453584 100453875 -81961367 + AluSx SINE Alu 1 308 -4 666 272 122 39 chr6 100453896 100454403 -81960839 + L1ME4a LINE L1 5562 6110 -11 1967 94 64 0 chr6 100454586 100454907 -81960335 - AluSp SINE Alu 0 338 1 186 43 0 0 chr6 100456228 100456251 -81958991 + (A)n Simple_repeat Simple_repeat 1 23 0 285 274 145 0 chr6 100456676 100456741 -81958501 - L2 LINE L2 0 3313 3259 207 0 0 0 chr6 100456741 100456764 -81958478 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 285 274 145 0 chr6 100456764 100456815 -81958427 - L2 LINE L2 -54 3259 3180 23 68 0 0 chr6 100458430 100458474 -81956768 + AT_rich Low_complexity Low_complexity 1 44 0 1946 92 12 67 chr6 100458539 100458866 -81956376 - AluY SINE Alu -2 309 1 251 294 92 42 chr6 100458956 100459218 -81956024 - L1MC/D LINE L1 -1961 5847 5573 239 369 47 35 chr6 100459430 100459774 -81955468 + L2 LINE L2 2234 2581 -733 388 222 198 25 chr6 100460099 100460261 -81954981 + L2 LINE L2 3115 3304 -9 309 323 90 20 chr6 100460413 100460614 -81954628 - L1MEc LINE L1 -4730 1580 1366 335 266 21 0 chr6 100460630 100460724 -81954518 + CT-rich Low_complexity Low_complexity 1 96 0 514 254 77 42 chr6 100460729 100461016 -81954226 - L1MEc LINE L1 -4863 1256 960 328 290 72 43 chr6 100461053 100461260 -81953982 - L1MEc LINE L1 -5219 900 688 5400 159 45 11 chr6 100461264 100463167 -81952075 - L1PB2 LINE L1 -2 6149 4199 405 121 0 0 chr6 100463163 100463229 -81952013 + L1PBa LINE L1 2594 2659 -4204 * 1627 134 17 65 chr6 100463296 100463633 -81951609 - AluSx SINE Alu 0 329 7 2541 190 25 46 chr6 100463898 100464424 -81950818 + MLT2B2 LTR ERVL 1 515 0 758 239 31 0 chr6 100464743 100464902 -81950340 - FRAM SINE Alu -11 165 2 297 151 0 0 chr6 100465246 100465299 -81949943 + (CA)n Simple_repeat Simple_repeat 2 54 0 306 323 79 6 chr6 100467169 100467333 -81947909 + MIR SINE MIR 10 185 -77 271 346 30 13 chr6 100467446 100467683 -81947559 + L1ME3A LINE L1 4942 5182 -964 * 963 324 87 4 chr6 100467678 100468162 -81947080 + L1ME3A LINE L1 5440 5963 -207 308 250 121 26 chr6 100468421 100468537 -81946705 + LTR33 LTR ERVL 1 127 -394 393 319 123 17 chr6 100468611 100468846 -81946396 + LTR33 LTR ERVL 262 521 0 23 0 0 0 chr6 100470178 100470201 -81945041 + AT_rich Low_complexity Low_complexity 1 23 0 11155 159 22 5 chr6 100470278 100473062 -81942180 - L1PA13 LINE L1 -2 6161 3338 959 177 23 0 chr6 100473062 100473282 -81941960 + L1PA13 LINE L1 3110 3334 -2812 2433 106 5 8 chr6 100473354 100473711 -81941531 - L1PB1 LINE L1 -1 6150 5793 262 13 0 107 chr6 100473711 100473786 -81941456 + (TA)n Simple_repeat Simple_repeat 1 67 0 2433 106 5 8 chr6 100473786 100473797 -81941445 - L1PB1 LINE L1 -358 5793 5783 264 79 0 79 chr6 100473798 100473874 -81941368 + (TA)n Simple_repeat Simple_repeat 1 70 0 282 259 0 37 chr6 100473878 100473986 -81941256 + L1MC4 LINE L1 6614 6717 -1325 * 941 174 0 6 chr6 100473975 100474147 -81941095 - L1P LINE L1 -2466 3680 3510 314 244 58 12 chr6 100474161 100474247 -81940995 - L1MC4 LINE L1 -1339 6703 6614 308 208 0 109 chr6 100474165 100474266 -81940976 + L1MC4 LINE L1 6614 6703 -1339 * 224 172 0 69 chr6 100474272 100474359 -81940883 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 344 22 0 22 chr6 100474362 100474408 -81940834 + (TA)n Simple_repeat Simple_repeat 2 46 0 252 111 0 0 chr6 100474522 100474567 -81940675 + (GA)n Simple_repeat Simple_repeat 1 45 0 696 242 124 71 chr6 100474879 100475089 -81940153 + MER39 LTR ERV1 68 265 -422 2136 127 0 7 chr6 100475089 100475397 -81939845 - AluSc SINE Alu -3 306 1 696 242 124 71 chr6 100475397 100475654 -81939588 + MER39 LTR ERV1 265 687 0 184 342 114 32 chr6 100476729 100476887 -81938355 + MIR3 SINE MIR 37 207 -1 216 345 8 42 chr6 100479138 100479257 -81935985 + L2 LINE L2 2185 2299 -1015 2085 93 65 0 chr6 100479954 100480244 -81934998 - AluSc SINE Alu 0 309 1 2549 94 0 3 chr6 100480608 100480970 -81934272 - L1P5 LINE L1 -419 5732 5372 978 276 137 23 chr6 100481905 100482336 -81932906 - MLT1H LTR MaLR -60 489 10 289 270 0 40 chr6 100482420 100482494 -81932748 + MLT1J1 LTR MaLR 44 114 -332 * 500 292 69 26 chr6 100482483 100482776 -81932466 + MLT1J2 LTR MaLR 125 437 -11 57 82 0 0 chr6 100483280 100483414 -81931828 + AT_rich Low_complexity Low_complexity 1 134 0 2760 203 28 18 chr6 100484250 100484866 -81930376 - L1MC3 LINE L1 -9 7776 7155 483 281 156 43 chr6 100485606 100485862 -81929380 + L3 LINE CR1 833 1117 -460 2132 207 62 41 chr6 100486062 100487045 -81928197 + Charlie1 DNA MER1_type 46 2760 -1 608 336 81 53 chr6 100487117 100487551 -81927691 + MLT1K LTR MaLR 3 448 -140 2277 108 0 0 chr6 100487779 100488074 -81927168 - AluSx SINE Alu -16 296 2 234 81 0 0 chr6 100488554 100488591 -81926651 + (TG)n Simple_repeat Simple_repeat 2 38 0 314 297 83 28 chr6 100489438 100489583 -81925659 - MER5A DNA MER1_type -1 188 36 384 22 0 0 chr6 100490833 100490878 -81924364 + (TG)n Simple_repeat Simple_repeat 2 46 0 1007 243 126 83 chr6 100494212 100494791 -81920451 - MLT1E1 LTR MaLR 0 654 1 650 225 42 7 chr6 100495008 100495150 -81920092 + MER63 DNA MER1_type 9 781 -281 1666 65 0 19 chr6 100495152 100495368 -81919874 + AluY SINE Alu 86 297 -14 26 74 0 0 chr6 100495634 100495688 -81919554 + AT_rich Low_complexity Low_complexity 1 54 0 2754 185 20 16 chr6 100496835 100497382 -81917860 - MER44D DNA MER2_type 0 605 2 2085 108 0 3 chr6 100497899 100498185 -81917057 + AluSg SINE Alu 2 286 -24 21 0 0 0 chr6 100498185 100498206 -81917036 + AT_rich Low_complexity Low_complexity 1 21 0 303 204 0 0 chr6 100498695 100498749 -81916493 + L2 LINE L2 3163 3216 -56 1718 159 10 3 chr6 100500368 100500658 -81914584 - AluSq SINE Alu -20 293 2 1639 318 182 21 chr6 100500680 100501317 -81913925 + L2 LINE L2 1962 2495 -818 1951 148 146 11 chr6 100501317 100501694 -81913548 + MSTA LTR MaLR 1 428 0 1639 318 182 21 chr6 100501694 100502211 -81913031 + L2 LINE L2 2495 3313 0 32 43 0 0 chr6 100502299 100502345 -81912897 + AT_rich Low_complexity Low_complexity 1 46 0 1852 200 46 0 chr6 100502661 100503011 -81912231 + MSTB LTR MaLR 1 366 -60 1245 262 144 56 chr6 100503092 100503843 -81911399 - L2 LINE L2 -66 3247 2405 742 342 87 40 chr6 100503887 100504459 -81910783 + HERVL LTR ERVL 2389 2987 -2084 310 239 0 0 chr6 100504791 100504858 -81910384 + HERVL LTR ERVL 3410 3476 -2288 1017 326 51 30 chr6 100505128 100505691 -81909551 + HERVL LTR ERVL 4190 4842 -922 388 310 135 62 chr6 100505876 100506247 -81908995 - L1 LINE L1 -2409 3737 3340 4129 215 50 33 chr6 100506448 100507858 -81907384 - L1M3 LINE L1 -539 5629 4188 2014 202 8 5 chr6 100507860 100508246 -81906996 + L1MB1 LINE L1 5728 6114 -75 469 207 10 7 chr6 100508250 100508352 -81906890 - L1M4 LINE L1 -1162 4984 4888 777 222 19 37 chr6 100508380 100508596 -81906646 + L1MA10 LINE L1 6120 6331 -3 646 298 46 25 chr6 100508830 100509068 -81906174 - MLT1H LTR MaLR -229 320 78 191 61 30 0 chr6 100509072 100509105 -81906137 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 327 272 75 119 chr6 100509131 100509491 -81905751 - MLT1H-int LTR MaLR 0 1371 1028 854 232 85 49 chr6 100509882 100510218 -81905024 + MLT1A1 LTR MaLR 1 453 -4 321 270 40 2 chr6 100510785 100510897 -81904345 - MLT1H LTR MaLR 0 654 466 547 293 90 47 chr6 100510960 100511172 -81904070 - MLT1H LTR MaLR -225 324 104 2053 118 7 3 chr6 100511172 100511459 -81903783 + AluSq SINE Alu 1 288 -25 561 316 21 11 chr6 100511547 100511734 -81903508 + MIR SINE MIR 17 205 -57 234 373 27 0 chr6 100511764 100511874 -81903368 + L2 LINE L2 1797 1909 -1405 1722 151 3 14 chr6 100512511 100512827 -81902415 + AluJb SINE Alu 1 313 0 32 26 0 0 chr6 100513572 100513611 -81901631 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 100513867 100513888 -81901354 + AT_rich Low_complexity Low_complexity 1 21 0 1786 219 104 75 chr6 100515258 100516050 -81899192 - LTR1B LTR ERV1 0 1020 1 660 291 88 32 chr6 100566558 100566843 -81848399 - MLT1L LTR MaLR -149 466 166 23 33 0 0 chr6 100567002 100567032 -81848210 + AT_rich Low_complexity Low_complexity 1 30 0 184 271 146 76 chr6 100567436 100567580 -81847662 - MIR SINE MIR -100 162 9 362 191 36 0 chr6 100568425 100568509 -81846733 + MER53 DNA DNA 9 95 -94 323 184 46 11 chr6 100568439 100568526 -81846716 - MER53 DNA DNA -12 177 88 * 227 304 0 0 chr6 100569901 100569957 -81845285 + MIR3 SINE MIR 114 169 -39 637 282 56 78 chr6 100570564 100570883 -81844359 + MLT1I LTR MaLR 48 359 -50 399 340 78 50 chr6 100570914 100571338 -81843904 + L1M4 LINE L1 2204 2639 -3507 659 224 9 0 chr6 100571354 100571470 -81843772 - FLAM_C SINE Alu -15 118 2 762 179 0 0 chr6 100571524 100571641 -81843601 - FLAM_C SINE Alu -26 117 1 339 318 74 33 chr6 100571653 100572204 -81843038 + L1M4 LINE L1 2639 3212 -2934 2684 259 154 26 chr6 100572397 100572625 -81842617 + L1MEc LINE L1 470 667 -5548 180 0 0 0 chr6 100572625 100572645 -81842597 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2684 259 154 26 chr6 100572645 100575663 -81839579 + L1MEc LINE L1 667 4117 -2098 303 250 59 7 chr6 100575780 100575932 -81839310 - L1M4 LINE L1 -2983 3163 3004 597 330 35 13 chr6 100575949 100576176 -81839066 - MIR SINE MIR -3 259 28 421 283 97 27 chr6 100578417 100578728 -81836514 + MLT1G1 LTR MaLR 2 347 -195 2545 30 20 0 chr6 100579203 100579500 -81835742 - AluY SINE Alu -8 303 1 2224 165 72 18 chr6 100580308 100580751 -81834491 - MLT1C LTR MaLR 0 467 1 2150 127 0 0 chr6 100581175 100581482 -81833760 + AluSg SINE Alu 1 307 -3 183 244 0 0 chr6 100581686 100581727 -81833515 + L2 LINE L2 3273 3313 0 243 0 0 0 chr6 100583399 100583426 -81831816 + (CA)n Simple_repeat Simple_repeat 2 28 0 8189 96 30 2 chr6 100583765 100584983 -81830259 + L1P LINE L1 2432 3683 -2463 2296 96 0 3 chr6 100585973 100586275 -81828967 - AluSq SINE Alu -9 304 4 28 48 0 0 chr6 100586853 100586895 -81828347 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr6 100586921 100586950 -81828292 + AT_rich Low_complexity Low_complexity 1 29 0 2409 243 93 37 chr6 100587305 100589030 -81826212 + L1ME1 LINE L1 842 6435 -11 366 23 0 0 chr6 100589056 100589099 -81826143 + (CA)n Simple_repeat Simple_repeat 2 44 0 199 368 23 58 chr6 100589839 100590013 -81825229 - L2 LINE L2 -15 3257 3090 1346 177 143 0 chr6 100590186 100590480 -81824762 + MER1B DNA MER1_type 2 337 0 432 235 0 0 chr6 100590752 100590833 -81824409 - MER63A DNA MER1_type 0 210 130 560 238 35 108 chr6 100591301 100591532 -81823710 + MER58C DNA MER1_type 1 214 -1 400 283 94 56 chr6 100591933 100592166 -81823076 + MIR SINE MIR 21 262 0 2035 98 0 18 chr6 100592374 100592659 -81822583 + AluSx SINE Alu 1 280 -32 387 0 0 0 chr6 100592660 100592703 -81822539 + (TAA)n Simple_repeat Simple_repeat 2 44 0 347 235 42 42 chr6 100593984 100594103 -81821139 - MIR3 SINE MIR -2 206 88 1041 171 79 30 chr6 100594125 100594507 -81820735 - MER39 LTR ERV1 0 639 312 2083 155 30 28 chr6 100594508 100594870 -81820372 - THE1B LTR MaLR 0 364 2 292 293 38 38 chr6 100594904 100595010 -81820232 - LTR48B LTR ERV1 -538 106 1 1578 191 112 10 chr6 100595655 100596038 -81819204 + L1MB7 LINE L1 5753 6174 -10 21 0 0 0 chr6 100596204 100596225 -81819017 + AT_rich Low_complexity Low_complexity 1 21 0 956 231 150 49 chr6 100597172 100597606 -81817636 + MLT1D LTR MaLR 1 467 0 317 293 64 124 chr6 100597773 100598056 -81817186 - L3 LINE CR1 -106 1471 1206 775 239 33 11 chr6 100598103 100598287 -81816955 + MER5A DNA MER1_type 1 188 -1 401 300 230 5 chr6 100598960 100599160 -81816082 - MIR SINE MIR -16 246 2 207 0 0 0 chr6 100599405 100599428 -81815814 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 188 314 85 78 chr6 100600463 100600616 -81814626 + L2 LINE L2 3118 3271 -1 461 298 40 0 chr6 100600721 100600872 -81814370 + L1ME2 LINE L1 6000 6156 -8 323 279 48 29 chr6 100601557 100601661 -81813581 + MIR SINE MIR 36 141 -67 21 36 0 0 chr6 100602693 100602721 -81812521 + AT_rich Low_complexity Low_complexity 1 28 0 247 298 29 0 chr6 100603361 100603465 -81811777 - L2 LINE L2 -1044 2270 2164 396 246 98 16 chr6 100603904 100604026 -81811216 - FLAM_A SINE Alu -1 132 1 213 371 18 12 chr6 100604534 100604697 -81810545 + MER5B DNA MER1_type 15 189 0 1993 145 0 0 chr6 100607601 100607891 -81807351 - AluSq SINE Alu -15 298 9 1824 162 0 4 chr6 100607947 100608225 -81807017 + AluJb SINE Alu 3 279 -33 1931 250 34 2 chr6 100609871 100610347 -81804895 - LTR40a LTR ERVL 0 519 29 21 0 0 0 chr6 100610834 100610855 -81804387 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr6 100612040 100612099 -81803143 + AT_rich Low_complexity Low_complexity 1 59 0 434 305 134 42 chr6 100612413 100612958 -81802284 + L1MC4a LINE L1 5315 5909 -1899 1748 132 64 3 chr6 100615403 100615698 -81799544 + AluSq SINE Alu 1 313 0 242 315 103 72 chr6 100615933 100616254 -81798988 + L3 LINE CR1 866 1196 -381 228 147 0 0 chr6 100616374 100616408 -81798834 - MLT2B1 LTR ERVL 0 414 381 678 130 9 9 chr6 100616416 100616519 -81798723 - LTR12 LTR ERV1 -2 712 611 5901 97 8 5 chr6 100616519 100617342 -81797900 - LTR12 LTR ERV1 0 826 1 1071 195 52 28 chr6 100617356 100617607 -81797635 - MLT2B1 LTR ERVL -263 257 1 227 257 277 0 chr6 100619896 100619997 -81795245 + MER5A DNA MER1_type 60 188 -1 3879 183 48 10 chr6 100620073 100620865 -81794377 + LTR1B LTR ERV1 5 826 0 23 33 0 0 chr6 100620890 100620920 -81794322 + AT_rich Low_complexity Low_complexity 1 30 0 271 359 61 8 chr6 100621011 100621142 -81794100 - MER115 DNA AcHobo -273 420 283 1876 120 3 18 chr6 100621318 100621634 -81793608 + AluSg SINE Alu 1 312 0 4587 177 113 96 chr6 100623182 100623741 -81791501 - L1MC3 LINE L1 0 7785 7237 303 261 11 11 chr6 100623741 100623829 -81791413 - MLT1F1 LTR MaLR -445 122 35 4587 177 113 96 chr6 100623829 100624638 -81790604 - L1MC3 LINE L1 -548 7237 6305 329 320 41 0 chr6 100624629 100624696 -81790546 - L1MCa LINE L1 -6271 155 92 * 216 0 0 0 chr6 100624696 100624720 -81790522 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 329 320 41 0 chr6 100624720 100624774 -81790468 - L1MCa LINE L1 -6334 92 29 252 59 0 0 chr6 100626349 100626383 -81788859 + (T)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr6 100629127 100629155 -81786087 + AT_rich Low_complexity Low_complexity 1 28 0 11702 154 51 68 chr6 100629209 100630149 -81785093 - Tigger1 DNA MER2_type -1 2417 1462 7120 58 1 0 chr6 100630149 100631619 -81783623 - L1PA6 LINE L1 0 6154 4683 11702 154 51 68 chr6 100631619 100633138 -81782104 - Tigger1 DNA MER2_type -956 1462 1 699 260 39 10 chr6 100633204 100633412 -81781830 + MER20 DNA MER1_type 5 218 -1 10541 193 36 24 chr6 100633555 100636866 -81778376 - L1MA7 LINE L1 0 6877 3529 3330 216 5 13 chr6 100636835 100637433 -81777809 - L1MA7 LINE L1 -5003 1650 1058 * 2709 128 222 8 chr6 100637433 100637942 -81777300 + MER51A LTR ERV1 1 618 -16 4434 278 27 11 chr6 100637972 100639339 -81775903 - L1MA7 LINE L1 -5465 1188 58 7461 172 42 37 chr6 100639546 100641199 -81774043 + L1M4c LINE L1 3 1664 -4720 1836 160 56 8 chr6 100641200 100641557 -81773685 + L1MB3 LINE L1 5808 6181 -2 350 325 40 7 chr6 100641930 100642081 -81773161 - MER69A DNA AcHobo -20 157 2 249 183 0 0 chr6 100642614 100642674 -81772568 + A-rich Low_complexity Low_complexity 1 60 0 364 307 104 53 chr6 100642992 100643445 -81771797 + L1ME LINE L1 5313 5788 -333 232 293 73 41 chr6 100644173 100644296 -81770946 + MIR SINE MIR 106 232 -30 245 293 113 0 chr6 100644978 100645084 -81770158 - L2 LINE L2 -1357 1957 1840 282 318 101 18 chr6 100645266 100645483 -81769759 + LTR16A LTR ERVL 207 441 -9 1553 181 0 0 chr6 100647495 100647754 -81767488 + MER2 DNA MER2_type 1 259 -86 315 233 12 29 chr6 100647794 100647966 -81767276 + (TA)n Simple_repeat Simple_repeat 2 170 0 228 292 34 0 chr6 100647982 100648071 -81767171 - L1MD2 LINE L1 -196 6163 6072 * 232 247 24 12 chr6 100648067 100648152 -81767090 - L1MC4 LINE L1 -1346 6696 6611 3193 101 14 0 chr6 100648257 100648703 -81766539 - MLT2A2 LTR ERVL 0 453 2 25929 98 9 10 chr6 100648890 100652660 -81762582 + L1PA5 LINE L1 11 3777 -2369 6956 54 7 3 chr6 100652660 100653917 -81761325 + L1PA5 LINE L1 4883 6147 -7 2036 143 0 0 chr6 100654271 100654578 -81760664 - AluSc SINE Alu -2 307 1 341 350 30 65 chr6 100654905 100655108 -81760134 + L3 LINE CR1 1192 1386 -191 2234 101 7 0 chr6 100655108 100655404 -81759838 - AluSg SINE Alu -12 298 1 341 350 30 65 chr6 100655404 100655463 -81759779 + L3 LINE CR1 1386 1445 -132 369 93 0 0 chr6 100656158 100656212 -81759030 + (TAG)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr6 100656868 100656889 -81758353 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 100657119 100657147 -81758095 + AT_rich Low_complexity Low_complexity 1 28 0 820 273 61 37 chr6 100658062 100658801 -81756441 + L1MEc LINE L1 2030 2757 -3458 21 0 0 0 chr6 100659218 100659239 -81756003 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr6 100660329 100660366 -81754876 + AT_rich Low_complexity Low_complexity 1 37 0 2208 104 0 0 chr6 100660876 100661173 -81754069 - AluSg SINE Alu -13 297 1 1846 175 0 0 chr6 100661497 100661800 -81753442 - AluSx SINE Alu -4 308 6 1882 189 74 3 chr6 100662346 100662737 -81752505 + MSTB1 LTR MaLR 1 419 -13 999 187 59 59 chr6 100663089 100663362 -81751880 + MER46B DNA MER2_type 1 148 -88 2105 200 44 0 chr6 100663362 100663747 -81751495 + LTR57 LTR ERVL 1 402 -9 249 108 0 0 chr6 100663764 100663801 -81751441 + (TG)n Simple_repeat Simple_repeat 2 38 0 244 291 0 13 chr6 100664387 100664466 -81750776 - MLT1I LTR MaLR -325 84 7 21 0 0 0 chr6 100664678 100664699 -81750543 + AT_rich Low_complexity Low_complexity 1 21 0 377 382 64 24 chr6 100665630 100666004 -81749238 - MLT1I LTR MaLR 0 409 21 25 51 0 0 chr6 100666151 100666190 -81749052 + AT_rich Low_complexity Low_complexity 1 39 0 350 282 73 0 chr6 100667454 100667564 -81747678 + MIR SINE MIR 69 186 -76 590 322 30 15 chr6 100668041 100668243 -81746999 + MIR SINE MIR 33 237 -25 298 336 18 9 chr6 100668527 100668637 -81746605 - L1MC/D LINE L1 -2185 5623 5513 182 235 0 0 chr6 100669458 100669492 -81745750 + L2 LINE L2 3267 3300 -13 901 271 127 39 chr6 100669653 100670115 -81745127 - MLT1H LTR MaLR 0 549 5 378 129 0 0 chr6 100671155 100671217 -81744025 + (TC)n Simple_repeat Simple_repeat 1 62 0 240 35 0 0 chr6 100671217 100671246 -81743996 + (TG)n Simple_repeat Simple_repeat 2 30 0 1884 89 11 7 chr6 100672223 100672493 -81742749 - L1PA8 LINE L1 -6 6166 5896 225 372 95 0 chr6 100672511 100672659 -81742583 + MIR SINE MIR 51 212 -50 2026 113 0 17 chr6 100672921 100673221 -81742021 + AluSc SINE Alu 1 295 -14 336 24 0 0 chr6 100673522 100673563 -81741679 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 242 71 30 chr6 100674011 100674110 -81741132 - MIR SINE MIR -62 200 98 203 94 62 62 chr6 100675403 100675467 -81739775 + (TTTA)n Simple_repeat Simple_repeat 3 66 0 369 0 0 0 chr6 100675497 100675538 -81739704 + (CA)n Simple_repeat Simple_repeat 2 42 0 4560 137 6 0 chr6 100676202 100676925 -81738317 + L1PA14 LINE L1 5426 6152 -9 356 211 67 0 chr6 100676963 100677053 -81738189 + L1MEc LINE L1 53 148 -6248 1678 286 62 59 chr6 100677054 100677892 -81737350 + L1MEc LINE L1 169 1012 -5384 1846 151 3 10 chr6 100677892 100678190 -81737052 + AluSx SINE Alu 1 296 -16 1678 286 62 59 chr6 100678190 100678256 -81736986 + L1MEc LINE L1 1012 1076 -5320 5420 263 88 63 chr6 100678280 100679160 -81736082 + L1M2 LINE L1 12 869 -5979 1466 106 89 17 chr6 100679160 100679396 -81735846 - AluSg SINE Alu 0 310 58 5420 263 88 63 chr6 100679396 100681420 -81733822 + L1M2 LINE L1 869 2842 -4006 1703 142 104 17 chr6 100681420 100681765 -81733477 + THE1C LTR MaLR 1 375 0 5420 263 88 63 chr6 100681765 100681860 -81733382 + L1M2 LINE L1 2842 2933 -3915 1556 198 22 0 chr6 100681860 100682138 -81733104 - AluJb SINE Alu -28 284 1 5420 263 88 63 chr6 100682138 100682387 -81732855 + L1M2 LINE L1 2933 3345 -3503 751 231 57 8 chr6 100682411 100682751 -81732491 + LTR54 LTR ERV1 99 510 0 26 30 0 0 chr6 100685005 100685038 -81730204 + AT_rich Low_complexity Low_complexity 1 33 0 238 323 0 0 chr6 100685268 100685330 -81729912 + L2 LINE L2 3211 3272 0 23 33 0 0 chr6 100685557 100685587 -81729655 + AT_rich Low_complexity Low_complexity 1 30 0 949 262 27 5 chr6 100685828 100686049 -81729193 - MER8 DNA MER2_type -13 226 1 334 299 39 24 chr6 100686055 100686182 -81729060 - MER112 DNA MER1_type -126 134 6 187 297 66 22 chr6 100686395 100686486 -81728756 - MIR3 SINE MIR 0 208 114 192 286 55 33 chr6 100686669 100686760 -81728482 + MIR3 SINE MIR 113 205 -3 22 70 0 0 chr6 100688392 100688435 -81726807 + AT_rich Low_complexity Low_complexity 1 43 0 229 182 39 52 chr6 100688459 100688536 -81726706 + L1MC4 LINE L1 6625 6700 -1342 244 272 0 22 chr6 100688690 100688782 -81726460 + L1MC4 LINE L1 6614 6703 -1339 252 246 0 33 chr6 100688787 100688848 -81726394 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 318 315 0 0 chr6 100688849 100688938 -81726304 + L1MC4 LINE L1 6615 6703 -1339 21 0 0 0 chr6 100688989 100689010 -81726232 + AT_rich Low_complexity Low_complexity 1 21 0 36 40 0 0 chr6 100689395 100689445 -81725797 + AT_rich Low_complexity Low_complexity 1 50 0 346 230 0 0 chr6 100689580 100689654 -81725588 - MIR SINE MIR -73 189 116 21 36 0 0 chr6 100690476 100690504 -81724738 + AT_rich Low_complexity Low_complexity 1 28 0 191 344 143 32 chr6 100691141 100691295 -81723947 + MIR SINE MIR 89 259 -3 184 308 0 77 chr6 100691760 100691825 -81723417 - MIR SINE MIR -133 75 16 279 0 0 0 chr6 100692065 100692096 -81723146 + (CA)n Simple_repeat Simple_repeat 2 32 0 264 296 0 23 chr6 100692370 100692458 -81722784 + T-rich Low_complexity Low_complexity 3 88 0 405 311 114 3 chr6 100693504 100693838 -81721404 - L1ME4a LINE L1 -246 5875 5505 2052 157 75 10 chr6 100693845 100694247 -81720995 - MSTA LTR MaLR 0 428 1 8424 189 45 6 chr6 100694247 100695836 -81719406 - MSTA-int LTR MaLR 0 1651 1 1487 172 143 39 chr6 100695840 100696224 -81719018 - MSTA LTR MaLR -4 424 1 24 0 0 0 chr6 100696682 100696706 -81718536 + AT_rich Low_complexity Low_complexity 1 24 0 2210 98 0 3 chr6 100696744 100697040 -81718202 + AluSp SINE Alu 1 295 -18 242 371 63 7 chr6 100697437 100697580 -81717662 + L2 LINE L2 2594 2744 -570 824 219 5 65 chr6 100697911 100698112 -81717130 - MER5A DNA MER1_type 0 189 1 32 26 0 0 chr6 100698221 100698260 -81716982 + AT_rich Low_complexity Low_complexity 1 39 0 435 280 88 8 chr6 100699505 100699630 -81715612 + MER5A DNA MER1_type 6 140 -49 310 330 9 0 chr6 100700561 100700673 -81714569 + L1M4 LINE L1 3724 3836 -2310 3141 196 66 56 chr6 100700708 100701439 -81713803 + L1MB7 LINE L1 5299 6042 -142 345 47 0 0 chr6 100701439 100701482 -81713760 + (TG)n Simple_repeat Simple_repeat 2 44 0 3141 196 66 56 chr6 100701482 100701614 -81713628 + L1MB7 LINE L1 6042 6171 -13 6405 195 34 61 chr6 100701717 100702558 -81712684 + L1MC2 LINE L1 29 892 -5534 243 0 0 0 chr6 100702558 100702585 -81712657 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6405 195 34 61 chr6 100702585 100703076 -81712166 + L1MC2 LINE L1 892 1308 -5118 674 217 0 0 chr6 100703076 100703205 -81712037 + FLAM_C SINE Alu 5 133 0 6405 195 34 61 chr6 100703205 100703550 -81711692 + L1MC2 LINE L1 1308 1661 -4765 1560 213 0 3 chr6 100703554 100703845 -81711397 + AluJo SINE Alu 3 292 -20 6221 238 48 16 chr6 100703847 100706014 -81709228 + L1MC2 LINE L1 1834 3930 -2694 1882 139 21 0 chr6 100706014 100706301 -81708941 + AluSx SINE Alu 1 293 -19 6221 238 48 16 chr6 100706301 100708459 -81706783 + L1MC2 LINE L1 3930 6338 -286 1651 181 3 16 chr6 100708459 100708774 -81706468 + AluJb SINE Alu 1 311 -1 6221 238 48 16 chr6 100708774 100709046 -81706196 + L1MC2 LINE L1 6338 6600 -24 206 290 0 0 chr6 100709600 100709662 -81705580 + (CATA)n Simple_repeat Simple_repeat 3 64 0 491 194 29 0 chr6 100709664 100709767 -81705475 - L1ME2 LINE L1 -10 6154 6049 * 572 237 47 26 chr6 100709762 100709952 -81705290 - L1MEc LINE L1 -2114 4101 3908 * 672 200 18 12 chr6 100709951 100710116 -81705126 - L1MD3 LINE L1 -8 7987 7822 470 249 132 0 chr6 100710127 100710316 -81704926 - L1MEc LINE L1 -2303 3912 3699 401 256 180 17 chr6 100710329 100710740 -81704502 - L1MEc LINE L1 -2551 3664 3187 18105 185 27 29 chr6 100710745 100712989 -81702253 - L1MA2 LINE L1 -7 7716 5469 1439 207 39 3 chr6 100712989 100713274 -81701968 - AluJo SINE Alu -17 295 1 18105 185 27 29 chr6 100713274 100718680 -81696562 - L1MA2 LINE L1 -2254 5469 12 1671 174 14 4 chr6 100718695 100718971 -81696271 - AluJb SINE Alu -23 289 11 1521 244 51 45 chr6 100718994 100719663 -81695579 - L1MEc LINE L1 -3027 3188 2516 911 243 73 99 chr6 100719700 100719924 -81695318 - L1MEc LINE L1 -4033 2363 2135 1731 180 7 0 chr6 100719924 100720213 -81695029 - AluSx SINE Alu -20 292 2 911 243 73 99 chr6 100720213 100720729 -81694513 - L1MEc LINE L1 -4261 2135 1643 2292 98 0 0 chr6 100720729 100721026 -81694216 - AluSc SINE Alu -12 297 1 911 243 73 99 chr6 100721026 100721100 -81694142 - L1MEc LINE L1 -4753 1643 1569 403 304 153 38 chr6 100721358 100721783 -81693459 + L1ME LINE L1 3338 3811 -2335 488 314 55 11 chr6 100721913 100722187 -81693055 + L1ME LINE L1 3953 4238 -1908 325 67 0 0 chr6 100722331 100722376 -81692866 - MADE1 DNA Mariner 0 80 36 458 333 73 44 chr6 100722495 100722959 -81692283 + L1ME LINE L1 4807 5302 -860 1877 148 3 3 chr6 100722959 100723249 -81691993 - AluSx SINE Alu -22 290 1 458 333 73 44 chr6 100723249 100723469 -81691773 + L1ME LINE L1 5302 5514 -648 252 86 0 0 chr6 100723709 100723744 -81691498 + (CA)n Simple_repeat Simple_repeat 2 36 0 316 264 112 67 chr6 100723838 100724264 -81690978 + MLT1J2 LTR MaLR 8 478 -33 2184 182 70 5 chr6 100725797 100726226 -81689016 + MSTB2 LTR MaLR 1 457 0 28 48 0 0 chr6 100726543 100726585 -81688657 + AT_rich Low_complexity Low_complexity 1 42 0 22 94 0 0 chr6 100727122 100727186 -81688056 + AT_rich Low_complexity Low_complexity 1 64 0 207 100 0 0 chr6 100727310 100727340 -81687902 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 1412 226 0 6 chr6 100727345 100727659 -81687583 - AluSx SINE Alu 0 312 1 29 78 0 0 chr6 100728205 100728269 -81686973 + AT_rich Low_complexity Low_complexity 1 64 0 216 97 0 0 chr6 100728392 100728423 -81686819 + (T)n Simple_repeat Simple_repeat 1 31 0 2275 115 0 0 chr6 100728430 100728742 -81686500 - AluSx SINE Alu 0 312 1 246 340 96 32 chr6 100729455 100729611 -81685631 + MIR SINE MIR 25 190 -72 30 27 0 0 chr6 100730042 100730079 -81685163 + AT_rich Low_complexity Low_complexity 1 37 0 195 220 0 0 chr6 100730420 100730470 -81684772 + (TATG)n Simple_repeat Simple_repeat 2 51 0 248 360 29 10 chr6 100730536 100730694 -81684548 - MER5B DNA MER1_type -18 171 1 211 197 26 40 chr6 100731116 100731192 -81684050 + GA-rich Low_complexity Low_complexity 1 75 0 2159 112 20 0 chr6 100733525 100733828 -81681414 + AluSc SINE Alu 1 309 0 2799 258 100 36 chr6 100734380 100735528 -81679714 + L1MEc LINE L1 49 1270 -5126 850 138 4 180 chr6 100735532 100735771 -81679471 - MER7A DNA MER2_type -151 195 1 3304 256 63 38 chr6 100735862 100736335 -81678907 + L1MEc LINE L1 1953 2413 -3802 1659 176 3 14 chr6 100736335 100736644 -81678598 + AluSx SINE Alu 1 306 0 249 33 0 0 chr6 100736644 100736674 -81678568 + (GA)n Simple_repeat Simple_repeat 2 31 0 3304 256 63 38 chr6 100736674 100737931 -81677311 + L1MEc LINE L1 2412 3712 -2503 5821 251 37 31 chr6 100737959 100740893 -81674349 + L1PA11 LINE L1 1 3768 -3816 1754 180 48 17 chr6 100740897 100741252 -81673990 + THE1C LTR MaLR 8 373 -2 8638 162 52 5 chr6 100741257 100742764 -81672478 + THE1C-int LTR MaLR 3 1580 0 * 2030 143 38 24 chr6 100742764 100743134 -81672108 + THE1C LTR MaLR 1 375 0 15652 158 28 7 chr6 100743134 100746658 -81668584 + L1PA11 LINE L1 3765 7368 -244 1365 251 29 11 chr6 100746653 100747032 -81668210 + L1ME1 LINE L1 5550 5935 -231 * 961 254 12 31 chr6 100747036 100747292 -81667950 + AluJo SINE Alu 32 282 -30 28 0 0 0 chr6 100747294 100747322 -81667920 + AT_rich Low_complexity Low_complexity 1 28 0 255 300 59 64 chr6 100747334 100747554 -81667688 + L1ME1 LINE L1 5945 6163 -3 246 220 0 0 chr6 100748037 100748096 -81667146 + (TA)n Simple_repeat Simple_repeat 1 59 0 28 48 0 0 chr6 100748209 100748251 -81666991 + AT_rich Low_complexity Low_complexity 1 42 0 2144 192 86 18 chr6 100748406 100748752 -81666490 - L1MB1 LINE L1 -7 6161 5767 474 18 0 0 chr6 100748752 100748807 -81666435 + (TA)n Simple_repeat Simple_repeat 1 55 0 2144 192 86 18 chr6 100748807 100748970 -81666272 - L1MB1 LINE L1 -401 5767 5617 * 3053 187 58 42 chr6 100748967 100749550 -81665692 + L1M3 LINE L1 4499 5109 -1059 2226 154 38 17 chr6 100749550 100749971 -81665271 - MSTB1 LTR MaLR -2 430 1 3053 187 58 42 chr6 100749971 100750495 -81664747 + L1M3 LINE L1 5109 5623 -545 850 262 25 25 chr6 100750659 100750903 -81664339 + MIR SINE MIR 19 262 0 227 146 42 0 chr6 100751335 100751383 -81663859 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 421 307 95 0 chr6 100751933 100752122 -81663120 + MER58C DNA MER1_type 9 215 0 520 271 24 6 chr6 100752813 100752979 -81662263 - L1M4 LINE L1 -4831 2024 1856 * 3608 252 67 51 chr6 100752973 100754514 -81660728 - L1M4 LINE L1 -4831 2024 483 942 192 18 40 chr6 100754525 100754749 -81660493 - L1M4 LINE L1 -6640 219 1 425 278 41 47 chr6 100754829 100754998 -81660244 + MLT1L LTR MaLR 440 607 -8 4337 243 42 48 chr6 100756495 100758347 -81656895 + L1MA6 LINE L1 778 3107 -4459 12314 188 38 68 chr6 100758361 100758927 -81656315 + L1MA6 LINE L1 3008 3590 -4129 1850 123 0 0 chr6 100758927 100759178 -81656064 + AluSx SINE Alu 46 296 -16 12314 188 38 68 chr6 100759178 100760847 -81654395 + L1MA6 LINE L1 3590 5308 -2411 1054 42 0 109 chr6 100760847 100761012 -81654230 + AluY SINE Alu 156 302 -9 12314 188 38 68 chr6 100761012 100763454 -81651788 + L1MA6 LINE L1 5308 7719 0 214 147 0 0 chr6 100764104 100764138 -81651104 + (CA)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chr6 100764556 100764584 -81650658 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 100765453 100765486 -81649756 + AT_rich Low_complexity Low_complexity 1 33 0 2292 295 109 53 chr6 100765817 100767292 -81647950 - L2 LINE L2 -7 3306 1750 197 308 128 0 chr6 100768137 100768215 -81647027 - L2 LINE L2 -2 3270 3183 212 377 197 0 chr6 100768219 100768341 -81646901 - L2 LINE L2 -6 3266 3121 234 82 10 112 chr6 100769861 100770057 -81645185 + (TA)n Simple_repeat Simple_repeat 2 177 0 208 325 106 31 chr6 100770223 100770383 -81644859 - L2 LINE L2 -237 3035 2864 222 213 0 0 chr6 100771021 100771068 -81644174 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 358 335 38 33 chr6 100771263 100771475 -81643767 - L2 LINE L2 -10 3303 3091 * 477 331 163 14 chr6 100771449 100771817 -81643425 - L2 LINE L2 -740 2574 2152 228 67 0 0 chr6 100772684 100772714 -81642528 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 23 33 0 0 chr6 100772810 100772840 -81642402 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr6 100773234 100773257 -81641985 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 307 192 0 0 chr6 100773454 100773535 -81641707 - Alu SINE Alu 0 314 234 978 179 0 0 chr6 100773539 100773701 -81641541 - AluJb SINE Alu -15 297 136 213 39 0 0 chr6 100774780 100774806 -81640436 + (TG)n Simple_repeat Simple_repeat 1 26 0 252 160 120 0 chr6 100776792 100776842 -81638400 - L2 LINE L2 0 3313 3258 2087 130 7 0 chr6 100777149 100777448 -81637794 - AluSq SINE Alu -12 301 1 9545 103 10 0 chr6 100777537 100778853 -81636389 + THE1A-int LTR MaLR 252 1580 0 2055 137 41 6 chr6 100778853 100779196 -81636046 + THE1A LTR MaLR 1 355 0 200 182 0 36 chr6 100779582 100779637 -81635605 + (CATA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 100780530 100780551 -81634691 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr6 100781307 100781359 -81633883 + AT_rich Low_complexity Low_complexity 1 52 0 27 29 0 0 chr6 100782082 100782116 -81633126 + AT_rich Low_complexity Low_complexity 1 34 0 307 304 78 0 chr6 100782462 100782564 -81632678 - L2 LINE L2 -3 3310 3201 227 309 0 49 chr6 100782605 100782686 -81632556 - L2 LINE L2 -1 3271 3195 399 132 0 0 chr6 100783515 100783583 -81631659 + (TG)n Simple_repeat Simple_repeat 1 68 0 216 0 0 0 chr6 100784066 100784090 -81631152 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1885 138 3 10 chr6 100784395 100784707 -81630535 - AluSg SINE Alu 0 310 1 2174 91 3 25 chr6 100785338 100785656 -81629586 + AluY SINE Alu 1 311 0 295 301 25 30 chr6 100787757 100787960 -81627282 - L1ME LINE L1 -382 5739 5538 25 0 0 0 chr6 100788063 100788088 -81627154 + AT_rich Low_complexity Low_complexity 1 25 0 5645 154 110 15 chr6 100788201 100789026 -81626216 + Tigger2 DNA MER2_type 2 954 -1764 1401 183 186 16 chr6 100789026 100789392 -81625850 - MSTA LTR MaLR 0 428 1 5645 154 110 15 chr6 100789392 100789643 -81625599 + Tigger2 DNA MER2_type 954 1180 -1538 13230 190 35 36 chr6 100789761 100792952 -81622290 - L1MA4 LINE L1 -280 7439 4246 180 0 0 0 chr6 100792952 100792972 -81622270 + (TTG)n Simple_repeat Simple_repeat 2 21 0 13230 190 35 36 chr6 100792972 100793959 -81621283 - L1MA4 LINE L1 -3473 4246 3269 228 67 0 0 chr6 100793959 100793989 -81621253 + (CA)n Simple_repeat Simple_repeat 1 30 0 13230 190 35 36 chr6 100793989 100794009 -81621233 - L1MA4 LINE L1 -4450 3269 3250 2884 233 19 0 chr6 100794009 100794594 -81620648 - L1MA4 LINE L1 -4722 1843 1248 3283 179 49 10 chr6 100794597 100795207 -81620035 + Tigger2 DNA MER2_type 1166 1799 -919 * 3921 171 51 15 chr6 100795203 100795934 -81619308 + Tigger2 DNA MER2_type 1962 2718 0 23 68 0 0 chr6 100796955 100796999 -81618243 + AT_rich Low_complexity Low_complexity 1 44 0 844 202 50 55 chr6 100797462 100797680 -81617562 - MER20 DNA MER1_type -1 218 2 2042 160 16 30 chr6 100799765 100800134 -81615108 - THE1B LTR MaLR 0 364 1 193 406 13 13 chr6 100802277 100802432 -81612810 - L3 LINE CR1 -961 616 462 2061 158 8 35 chr6 100802723 100803097 -81612145 + THE1B LTR MaLR 1 364 0 329 320 29 10 chr6 100803991 100804094 -81611148 - L2 LINE L2 -2 3311 3207 398 284 87 9 chr6 100805834 100806063 -81609179 + L1ME4a LINE L1 5608 5854 -267 11525 230 33 20 chr6 100806136 100809940 -81605302 + L1PA11 LINE L1 6 4689 -2895 189 0 0 0 chr6 100809940 100809961 -81605281 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 11525 230 33 20 chr6 100809961 100810445 -81604797 + L1PA11 LINE L1 4689 5165 -2419 5754 117 13 34 chr6 100810445 100810610 -81604632 + L1PA11 LINE L1 5977 6144 -1468 2356 94 0 7 chr6 100810610 100810918 -81604324 + AluY SINE Alu 1 306 -5 5754 117 13 34 chr6 100810918 100811011 -81604231 + L1PA11 LINE L1 6144 6237 -1375 1677 181 0 11 chr6 100811011 100811298 -81603944 + AluSx SINE Alu 7 290 -22 5754 117 13 34 chr6 100811298 100812709 -81602533 + L1PA11 LINE L1 6237 7612 0 308 250 46 9 chr6 100812737 100812845 -81602397 + L1ME4a LINE L1 5999 6110 -11 365 0 22 0 chr6 100815107 100815152 -81600090 + (TG)n Simple_repeat Simple_repeat 1 46 0 215 312 11 0 chr6 100818809 100818874 -81596368 + MIR SINE MIR 94 162 -46 458 288 39 42 chr6 100819639 100819893 -81595349 + MIR SINE MIR 14 262 0 24 67 0 0 chr6 100822578 100822623 -81592619 + AT_rich Low_complexity Low_complexity 1 45 0 190 368 24 32 chr6 100823988 100824113 -81591129 - L3 LINE CR1 -44 1533 1410 29 0 0 0 chr6 100824154 100824183 -81591059 + AT_rich Low_complexity Low_complexity 1 29 0 284 307 80 44 chr6 100825302 100825439 -81589803 - MIR SINE MIR -106 156 15 2797 158 25 8 chr6 100825791 100826303 -81588939 + L1MC1 LINE L1 5804 6324 -9 21 36 0 0 chr6 100826829 100826857 -81588385 + AT_rich Low_complexity Low_complexity 1 28 0 379 295 147 26 chr6 100827537 100827693 -81587549 - MLT1I LTR MaLR -137 272 98 216 86 0 0 chr6 100827818 100827853 -81587389 + (CA)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr6 100828259 100828282 -81586960 + (CA)n Simple_repeat Simple_repeat 2 24 0 255 31 0 0 chr6 100828304 100828336 -81586906 + (TG)n Simple_repeat Simple_repeat 2 33 0 12799 197 29 7 chr6 100828491 100832213 -81583029 + L1PA15 LINE L1 2356 6163 -2 563 304 13 40 chr6 100832424 100832651 -81582591 - MIR SINE MIR -11 251 31 13355 173 33 12 chr6 100832974 100836079 -81579163 + L1MA1 LINE L1 2934 6179 -1542 2294 74 0 0 chr6 100836079 100836399 -81578843 + AluY SINE Alu 1 320 0 13355 173 33 12 chr6 100836399 100837975 -81577267 + L1MA1 LINE L1 6179 7721 0 279 54 0 0 chr6 100838083 100838120 -81577122 + (TG)n Simple_repeat Simple_repeat 2 38 0 31 26 0 0 chr6 100839033 100839071 -81576171 + AT_rich Low_complexity Low_complexity 1 38 0 544 185 8 42 chr6 100839613 100839732 -81575510 + MIR SINE MIR 141 255 -7 400 250 0 12 chr6 100839734 100839902 -81575340 + CT-rich Low_complexity Low_complexity 3 168 0 2444 263 52 13 chr6 100840003 100840902 -81574340 - L1M4 LINE L1 -2211 3935 3002 1023 198 12 27 chr6 100840899 100841157 -81574085 - L1MB1 LINE L1 -337 5852 5599 * 6095 116 4 0 chr6 100841157 100842149 -81573093 - L1PA11 LINE L1 0 6174 5177 13849 179 33 10 chr6 100842154 100848097 -81567145 - L1PB1 LINE L1 -2 6865 634 1055 159 5 25 chr6 100848097 100848298 -81566944 - L1PB1 LINE L1 -6663 200 4 994 117 80 6 chr6 100848295 100848458 -81566784 - L1M3 LINE L1 -559 5609 5435 * 818 149 43 0 chr6 100848458 100848599 -81566643 + L1MB1 LINE L1 5865 6011 -157 1031 165 38 17 chr6 100848600 100848836 -81566406 - L1MCa LINE L1 -5409 1017 777 1031 227 14 5 chr6 100848846 100849062 -81566180 - L1MCa LINE L1 -6188 238 21 541 15 0 0 chr6 100849282 100849348 -81565894 + L1PA3 LINE L1 6087 6152 -3 263 48 0 24 chr6 100849351 100849393 -81565849 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 26 30 0 0 chr6 100849591 100849624 -81565618 + AT_rich Low_complexity Low_complexity 1 33 0 247 240 0 0 chr6 100850674 100850724 -81564518 + (TG)n Simple_repeat Simple_repeat 2 51 0 214 288 0 14 chr6 100851180 100851253 -81563989 + (TA)n Simple_repeat Simple_repeat 2 73 0 2342 82 0 19 chr6 100852186 100852502 -81562740 + AluY SINE Alu 1 310 -1 2438 175 7 7 chr6 100852575 100853039 -81562203 - L1MC1 LINE L1 -188 6145 5682 207 0 0 0 chr6 100853039 100853062 -81562180 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1251 183 84 8 chr6 100853086 100853337 -81561905 - AluJb SINE Alu -42 270 1 2398 159 60 0 chr6 100853338 100853817 -81561425 - L1MC1 LINE L1 -652 5692 5188 25 0 0 0 chr6 100853819 100853844 -81561398 + AT_rich Low_complexity Low_complexity 1 25 0 6997 50 7 0 chr6 100853844 100855481 -81559761 - L1PA5 LINE L1 -8 6146 4504 241 24 73 0 chr6 100855481 100855522 -81559720 + T-rich Low_complexity Low_complexity 1 44 0 2555 14 0 0 chr6 100855522 100855809 -81559433 - AluYb8 SINE Alu -31 287 1 5461 102 0 1 chr6 100855819 100856615 -81558627 + L1P LINE L1 1944 2738 -3408 7099 52 9 1 chr6 100856877 100857980 -81557262 - L1P2 LINE L1 -549 5605 4497 2797 19 0 0 chr6 100857980 100858298 -81556944 - AluYb8 SINE Alu 0 318 1 19553 47 3 0 chr6 100858308 100860864 -81554378 + L1P LINE L1 1944 4505 -1641 5881 252 58 18 chr6 100860872 100861049 -81554193 - L1MC1 LINE L1 -945 5201 5033 2034 155 0 0 chr6 100861049 100861358 -81553884 - AluSx SINE Alu -3 309 1 5881 252 58 18 chr6 100861358 100863177 -81552065 - L1MC1 LINE L1 -1113 5033 3124 333 307 36 43 chr6 100863206 100863346 -81551896 + L1M4 LINE L1 2482 2620 -3526 1066 257 88 44 chr6 100863585 100864017 -81551225 - MLT1C LTR MaLR 0 467 17 727 190 0 29 chr6 100865495 100865632 -81549610 + FLAM_C SINE Alu 1 133 0 470 280 0 30 chr6 100866378 100866510 -81548732 + MIR SINE MIR 94 221 -41 21 0 0 0 chr6 100866867 100866888 -81548354 + AT_rich Low_complexity Low_complexity 1 21 0 267 93 0 0 chr6 100867167 100867210 -81548032 + (TG)n Simple_repeat Simple_repeat 2 44 0 30 0 0 0 chr6 100867398 100867428 -81547814 + AT_rich Low_complexity Low_complexity 1 30 0 5454 149 52 37 chr6 100868674 100869455 -81545787 + L1MA6 LINE L1 5066 5880 -420 1981 144 18 26 chr6 100869455 100869795 -81545447 - MER1B DNA MER1_type 0 337 1 5454 149 52 37 chr6 100869795 100870223 -81545019 + L1MA6 LINE L1 5880 6300 0 191 203 17 0 chr6 100870493 100870552 -81544690 + CT-rich Low_complexity Low_complexity 1 60 0 225 346 45 0 chr6 100871661 100871794 -81543448 - MLT1K LTR MaLR -2 586 448 1170 52 7 0 chr6 100872328 100872481 -81542761 - L1PA5 LINE L1 0 6154 6001 4873 42 4 1 chr6 100872481 100873431 -81541811 + L1PA5 LINE L1 4906 5858 -296 553 341 69 54 chr6 100873434 100874247 -81540995 - L1MC1 LINE L1 -3056 3090 2266 215 259 8 46 chr6 100874382 100874513 -81540729 + T-rich Low_complexity Low_complexity 1 126 0 377 318 96 29 chr6 100874628 100874867 -81540375 - HAL1b LINE L1 -422 926 672 22 35 0 0 chr6 100875081 100875110 -81540132 + AT_rich Low_complexity Low_complexity 1 29 0 680 203 8 0 chr6 100875508 100875651 -81539591 + FLAM_A SINE Alu 1 144 0 4383 32 0 0 chr6 100875763 100876289 -81538953 - L1P LINE L1 -951 5195 4670 7238 48 0 0 chr6 100877144 100878103 -81537139 + L1PA3 LINE L1 5194 6155 0 1270 186 128 25 chr6 100878221 100878548 -81536694 + THE1C LTR MaLR 15 375 0 2031 93 0 11 chr6 100879096 100879375 -81535867 + AluSc SINE Alu 34 309 0 352 310 35 0 chr6 100880094 100880236 -81535006 + HAL1b LINE L1 1195 1341 -7 444 303 12 6 chr6 100880600 100880765 -81534477 + L1ME3 LINE L1 4625 4790 -1356 1515 187 145 14 chr6 100880775 100881209 -81534033 + LTR54B LTR ERV1 1 491 -7 1124 196 115 56 chr6 100881367 100881840 -81533402 + MER31B LTR ERV1 1 485 0 524 311 17 18 chr6 100881966 100882349 -81532893 + L1ME3 LINE L1 5078 5462 -702 996 257 37 58 chr6 100882389 100882827 -81532415 + MER39 LTR ERV1 73 673 -5 877 276 84 13 chr6 100882833 100883144 -81532098 + L1ME3 LINE L1 5452 5784 -386 32530 64 4 2 chr6 100883171 100888221 -81527021 - L1PA5 LINE L1 -2 6152 1094 712 266 35 76 chr6 100888215 100888556 -81526686 + L1ME3 LINE L1 5785 6111 -59 * 291 332 81 29 chr6 100888695 100889078 -81526164 + L1ME4a LINE L1 5541 5943 -178 265 228 79 10 chr6 100889083 100889184 -81526058 + L1ME4a LINE L1 6001 6108 -13 2173 112 7 0 chr6 100890494 100890790 -81524452 + AluSq SINE Alu 2 299 -14 503 204 9 0 chr6 100891096 100891204 -81524038 - L1 LINE L1 -3524 2622 2514 25 31 0 0 chr6 100892667 100892699 -81522543 + AT_rich Low_complexity Low_complexity 1 32 0 475 378 92 34 chr6 100892952 100893309 -81521933 + L2 LINE L2 220 597 -2717 298 257 64 82 chr6 100894079 100894250 -81520992 - MIR SINE MIR -10 252 85 * 386 367 194 12 chr6 100894236 100894746 -81520496 + L2 LINE L2 1884 2486 -828 21 89 0 0 chr6 100894926 100894982 -81520260 + AT_rich Low_complexity Low_complexity 1 56 0 316 340 33 42 chr6 100895038 100895250 -81519992 - L2 LINE L2 -1 3312 3103 219 88 0 0 chr6 100895260 100895294 -81519948 + (TG)n Simple_repeat Simple_repeat 2 35 0 2139 101 7 7 chr6 100895451 100895749 -81519493 - AluSc SINE Alu -8 301 4 225 0 0 0 chr6 100898737 100898762 -81516480 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr6 100898860 100898881 -81516361 + AT_rich Low_complexity Low_complexity 1 21 0 220 288 250 0 chr6 100900636 100900716 -81514526 - MER5B DNA MER1_type -6 172 73 1421 246 41 47 chr6 100900916 100901424 -81513818 + MLT1D LTR MaLR 1 505 0 26 50 0 0 chr6 100901656 100901696 -81513546 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr6 100902007 100902038 -81513204 + AT_rich Low_complexity Low_complexity 1 31 0 425 50 17 0 chr6 100902156 100902216 -81513026 + (CA)n Simple_repeat Simple_repeat 2 62 0 898 235 59 13 chr6 100902596 100902939 -81512303 + MSTD LTR MaLR 1 396 0 1036 231 44 10 chr6 100902939 100903234 -81512008 + L1MEc LINE L1 643 947 -5449 554 218 16 32 chr6 100903241 100903429 -81511813 + L1MEc LINE L1 985 1169 -5227 338 327 0 0 chr6 100903413 100903523 -81511719 + L1MDa LINE L1 262 371 -6426 * 1591 291 141 27 chr6 100903590 100904114 -81511128 - L2 LINE L2 -1299 2015 1365 1678 69 5 0 chr6 100904114 100904330 -81510912 + AluY SINE Alu 86 302 -9 1591 291 141 27 chr6 100904330 100904612 -81510630 - L2 LINE L2 -1949 1365 1117 1784 182 3 47 chr6 100904623 100904996 -81510246 + L1MD2 LINE L1 232 557 -6230 1522 139 0 8 chr6 100904993 100905230 -81510012 + L1PA13 LINE L1 1634 1868 -4919 * 276 30 0 0 chr6 100905231 100905264 -81509978 + (CA)n Simple_repeat Simple_repeat 2 34 0 12405 204 59 17 chr6 100905288 100908153 -81507089 + L1PA13 LINE L1 2138 5121 -1676 240 22 67 22 chr6 100908133 100908178 -81507064 + L1PA4 LINE L1 5938 5984 -171 * 5731 100 31 5 chr6 100908181 100909213 -81506029 + L1PA13 LINE L1 5755 6809 -5 404 193 147 0 chr6 100909213 100909322 -81505920 + L1MD2 LINE L1 4223 4347 -2450 * 2715 236 93 32 chr6 100909295 100910113 -81505129 + L1MD2 LINE L1 6109 6976 -34 347 281 60 32 chr6 100910168 100910353 -81504889 + L1ME1 LINE L1 1761 1950 -5028 3019 240 84 23 chr6 100910372 100912176 -81503066 + L1ME1 LINE L1 4896 6813 -4 1896 166 3 0 chr6 100912233 100912540 -81502702 + AluSg SINE Alu 1 308 -2 224 155 0 56 chr6 100912609 100912680 -81502562 + (TAA)n Simple_repeat Simple_repeat 2 68 0 533 207 89 49 chr6 100912714 100912917 -81502325 + L1MC5 LINE L1 7305 7515 -446 482 321 55 42 chr6 100913495 100913947 -81501295 - L1ME1 LINE L1 -332 5834 5377 216 0 0 0 chr6 100917226 100917250 -81497992 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 303 346 124 35 chr6 100919088 100919717 -81495525 - L2 LINE L2 -2 3311 2627 182 302 32 0 chr6 100919992 100920055 -81495187 - L2 LINE L2 -1 3312 3248 37 0 0 0 chr6 100920250 100920287 -81494955 + AT_rich Low_complexity Low_complexity 1 37 0 2810 155 18 2 chr6 100920348 100920837 -81494405 + LOR1a LTR ERV1 1 497 0 215 103 26 0 chr6 100920886 100920925 -81494317 + (TA)n Simple_repeat Simple_repeat 2 41 0 379 313 60 20 chr6 100921543 100921693 -81493549 + MIR SINE MIR 29 184 -78 1935 141 10 13 chr6 100921737 100922035 -81493207 - AluSx SINE Alu -15 297 1 25 51 0 0 chr6 100922176 100922215 -81493027 + AT_rich Low_complexity Low_complexity 1 39 0 3398 132 13 4 chr6 100923194 100923741 -81491501 + MER41A LTR ERV1 3 554 0 29 60 0 0 chr6 100924629 100924679 -81490563 + AT_rich Low_complexity Low_complexity 1 50 0 665 212 163 20 chr6 100924687 100924890 -81490352 + MER67C LTR ERV1 1 232 -478 1912 207 26 10 chr6 100924918 100925305 -81489937 + MER57A LTR ERV1 11 403 0 2484 166 16 29 chr6 100925305 100925437 -81489805 + MER67C LTR ERV1 229 361 -349 261 0 0 0 chr6 100925437 100925466 -81489776 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2484 166 16 29 chr6 100925466 100925821 -81489421 + MER67C LTR ERV1 361 710 0 237 225 45 45 chr6 100927397 100927508 -81487734 + (TATATG)n Simple_repeat Simple_repeat 5 115 0 23 78 0 0 chr6 100927596 100927647 -81487595 + AT_rich Low_complexity Low_complexity 1 51 0 275 277 11 11 chr6 100928521 100928615 -81486627 + L1ME4a LINE L1 5317 5410 -711 441 0 0 0 chr6 100928910 100928959 -81486283 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 23 0 0 0 chr6 100928978 100929001 -81486241 + AT_rich Low_complexity Low_complexity 1 23 0 445 324 120 25 chr6 100929620 100930027 -81485215 + L1ME4a LINE L1 5584 6029 -92 22 0 0 0 chr6 100930031 100930053 -81485189 + AT_rich Low_complexity Low_complexity 1 22 0 32 26 0 0 chr6 100930855 100930894 -81484348 + AT_rich Low_complexity Low_complexity 1 39 0 2245 75 0 35 chr6 100930899 100931218 -81484024 + AluY SINE Alu 1 308 -3 538 310 105 5 chr6 100932176 100932376 -81482866 - MIR SINE MIR -3 259 40 3085 239 157 69 chr6 100932438 100934052 -81481190 - MER52A LTR ERV1 0 1755 1 234 191 0 0 chr6 100934119 100934166 -81481076 + A-rich Low_complexity Low_complexity 1 47 0 372 242 148 8 chr6 100934286 100934414 -81480828 - MIR SINE MIR -7 255 110 981 253 49 54 chr6 100934594 100934982 -81480260 - MLT1B LTR MaLR -4 386 1 514 312 95 26 chr6 100935840 100936071 -81479171 - MIR SINE MIR -7 255 9 246 32 0 0 chr6 100936367 100936398 -81478844 + (ATG)n Simple_repeat Simple_repeat 1 31 0 527 303 140 48 chr6 100937057 100937470 -81477772 - L2 LINE L2 -54 3259 2809 517 248 83 0 chr6 100937642 100937775 -81477467 - MER3 DNA MER1_type -87 122 26 1746 194 5 13 chr6 100938572 100938953 -81476289 - L1MB8 LINE L1 -1 6177 5800 2654 210 22 15 chr6 100938959 100939498 -81475744 + MER44D DNA MER2_type 7 604 -1 1895 178 68 22 chr6 100939498 100939908 -81475334 - L1MB8 LINE L1 -376 5802 5374 7960 139 9 18 chr6 100940607 100941915 -81473327 + HSMAR2 DNA Mariner 6 1302 0 21 57 0 0 chr6 100942146 100942181 -81473061 + AT_rich Low_complexity Low_complexity 1 35 0 238 367 13 0 chr6 100942303 100942382 -81472860 + L2 LINE L2 3151 3230 -42 1726 199 35 61 chr6 100942632 100943059 -81472183 + MLT2C2 LTR ERVL 1 416 -48 237 317 49 0 chr6 100943085 100943167 -81472075 + L2 LINE L2 2558 2643 -671 207 0 0 0 chr6 100943224 100943247 -81471995 + (TG)n Simple_repeat Simple_repeat 1 23 0 1072 190 22 18 chr6 100943249 100943475 -81471767 + MER2 DNA MER2_type 13 239 -106 272 255 0 0 chr6 100943486 100943537 -81471705 - MER2 DNA MER2_type -5 340 290 306 118 20 0 chr6 100943561 100943612 -81471630 + MLT2C2 LTR ERVL 413 464 0 1274 207 59 28 chr6 100944080 100944370 -81470872 + AluJo SINE Alu 3 301 -1 266 24 5 0 chr6 100944577 100944623 -81470619 - L1PA3 LINE L1 -3 6152 6106 22 0 0 0 chr6 100944846 100944868 -81470374 + AT_rich Low_complexity Low_complexity 1 22 0 588 40 0 0 chr6 100946061 100946136 -81469106 + AluY SINE Alu 222 296 -13 520 289 78 15 chr6 100946428 100946632 -81468610 + MIR SINE MIR 25 241 -21 22 0 0 0 chr6 100946883 100946905 -81468337 + AT_rich Low_complexity Low_complexity 1 22 0 213 282 0 35 chr6 100947314 100947399 -81467843 + CT-rich Low_complexity Low_complexity 3 84 0 299 152 0 15 chr6 100947634 100947700 -81467542 + (TA)n Simple_repeat Simple_repeat 2 66 0 245 288 51 25 chr6 100948814 100948932 -81466310 + MIR SINE MIR 29 149 -113 33 0 0 0 chr6 100949073 100949106 -81466136 + AT_rich Low_complexity Low_complexity 1 33 0 1594 157 27 27 chr6 100949916 100950216 -81465026 - AluJb SINE Alu -12 300 1 2357 53 0 17 chr6 100950587 100950888 -81464354 + AluY SINE Alu 1 296 -15 21 36 0 0 chr6 100951283 100951311 -81463931 + AT_rich Low_complexity Low_complexity 1 28 0 6876 60 6 0 chr6 100952737 100953617 -81461625 + L1PA7 LINE L1 5256 6140 -14 1550 220 96 19 chr6 100954701 100955170 -81460072 - MLT1D LTR MaLR 0 505 1 5874 133 132 122 chr6 100955586 100957292 -81457950 + pTR5 LTR ERV1 742 2438 0 1844 66 6 170 chr6 100957764 100958111 -81457131 - AluY SINE Alu -19 292 3 342 332 168 21 chr6 100958154 100958344 -81456898 - L3 LINE CR1 -364 1213 996 252 241 0 69 chr6 100958392 100958537 -81456705 + T-rich Low_complexity Low_complexity 1 135 0 311 359 51 18 chr6 100958537 100958754 -81456488 - L3 LINE CR1 -732 845 622 821 147 38 0 chr6 100959684 100959841 -81455401 - L1MA4 LINE L1 -4 6296 6134 16466 73 13 11 chr6 100961189 100962154 -81453088 - L1PA6 LINE L1 -6 6148 5187 243 0 0 0 chr6 100962154 100962181 -81453061 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 16466 73 13 11 chr6 100962181 100963790 -81451452 - L1PA6 LINE L1 -967 5187 3559 2809 7 0 0 chr6 100963790 100964097 -81451145 + AluYa5 SINE Alu 1 307 -4 16466 73 13 11 chr6 100964097 100964592 -81450650 - L1PA6 LINE L1 -2595 3559 3067 6555 63 6 0 chr6 100964592 100965450 -81449792 + L1PA6 LINE L1 2199 3061 -3085 34 24 0 0 chr6 100966656 100966697 -81448545 + AT_rich Low_complexity Low_complexity 1 41 0 1870 136 4 0 chr6 100967586 100967865 -81447377 - AluSq SINE Alu -30 283 4 21 0 0 0 chr6 100967868 100967889 -81447353 + AT_rich Low_complexity Low_complexity 1 21 0 888 299 62 12 chr6 100967899 100968398 -81446844 - L1ME LINE L1 -373 5797 5274 1501 191 4 0 chr6 100968428 100968685 -81446557 - AluSq SINE Alu -53 260 3 313 285 92 89 chr6 100968702 100969081 -81446161 - L1ME LINE L1 -896 5250 4874 2371 134 16 11 chr6 100969081 100969454 -81445788 + THE1C LTR MaLR 1 375 0 9911 122 35 12 chr6 100969454 100970999 -81444243 + THE1C-int LTR MaLR 1 1580 0 2268 164 13 5 chr6 100970999 100971371 -81443871 + THE1C LTR MaLR 1 375 0 313 285 92 89 chr6 100971371 100971653 -81443589 - L1ME LINE L1 -1271 4875 4585 1916 151 16 49 chr6 100971885 100972270 -81442972 - THE1C LTR MaLR -3 372 1 38 75 0 0 chr6 100972288 100972368 -81442874 + AT_rich Low_complexity Low_complexity 1 80 0 32 26 0 0 chr6 100972430 100972469 -81442773 + AT_rich Low_complexity Low_complexity 1 39 0 249 323 48 24 chr6 100973265 100973389 -81441853 - LTR16C LTR ERVL 0 491 365 255 271 168 47 chr6 100973513 100973620 -81441622 + L2 LINE L2 3190 3309 -4 354 317 118 30 chr6 100973620 100973882 -81441360 - L1MEd LINE L1 -4911 1208 924 545 147 0 32 chr6 100973893 100973988 -81441254 + FLAM_A SINE Alu 42 133 -9 26 50 0 0 chr6 100973990 100974030 -81441212 + AT_rich Low_complexity Low_complexity 1 40 0 259 241 71 27 chr6 100974143 100974255 -81440987 - L1MEd LINE L1 -5302 817 701 1678 160 46 0 chr6 100974421 100974703 -81440539 + AluSx SINE Alu 1 295 -17 243 41 61 20 chr6 100975047 100975096 -81440146 + A-rich Low_complexity Low_complexity 2 52 0 30 77 0 0 chr6 100975292 100975357 -81439885 + AT_rich Low_complexity Low_complexity 1 65 0 1365 167 115 35 chr6 100976144 100976315 -81438927 + THE1C LTR MaLR 1 157 -218 378 0 0 0 chr6 100976315 100976357 -81438885 + (TC)n Simple_repeat Simple_repeat 1 42 0 1365 167 115 35 chr6 100976357 100976532 -81438710 + THE1C LTR MaLR 157 375 0 275 298 71 28 chr6 100977620 100977761 -81437481 + HAL1 LINE L1 1 147 -2360 303 257 116 92 chr6 100977818 100978121 -81437121 + HAL1 LINE L1 1302 1611 -896 259 304 107 82 chr6 100978125 100978480 -81436762 + L2 LINE L2 2545 2908 -406 26 0 0 0 chr6 100979007 100979033 -81436209 + AT_rich Low_complexity Low_complexity 1 26 0 1067 212 0 0 chr6 100979100 100979289 -81435953 + MER58A DNA MER1_type 27 215 -9 321 277 79 62 chr6 100979411 100979588 -81435654 - HAL1 LINE L1 -910 1597 1418 518 303 90 66 chr6 100979642 100980182 -81435060 - L1M4b LINE L1 -4901 2046 1367 12782 215 35 16 chr6 100981144 100985839 -81429403 - L1 LINE L1 -797 6370 1583 577 152 19 9 chr6 100985939 100986044 -81429198 + MER4A LTR ERV1 559 664 0 2330 129 118 55 chr6 100986047 100986604 -81428638 + MER4A-int LTR ERV1 1 686 -5912 1189 262 39 16 chr6 100986751 100987060 -81428182 + MER4A-int LTR ERV1 1852 2167 -4164 1478 160 2 13 chr6 100987117 100987590 -81427652 + MER4B-int LTR ERV1 196 706 -6052 1530 191 3 7 chr6 100987901 100988212 -81427030 + AluJb SINE Alu 3 312 0 390 268 171 30 chr6 100988678 100988842 -81426400 + L2 LINE L2 2593 2779 -535 238 315 90 18 chr6 100988906 100989017 -81426225 + L2 LINE L2 3194 3312 -1 1124 323 62 30 chr6 100990458 100991019 -81424223 - HERVL40 LTR ERVL -4137 1393 815 696 287 19 23 chr6 100991161 100991377 -81423865 - HERVL40 LTR ERVL -4748 782 568 1469 231 39 97 chr6 100991404 100991993 -81423249 - HERVL40 LTR ERVL -4960 570 16 1576 248 72 14 chr6 100992029 100992472 -81422770 - LTR40a LTR ERVL -50 469 1 191 248 30 10 chr6 100993375 100993476 -81421766 + GA-rich Low_complexity Low_complexity 1 103 0 5902 102 22 6 chr6 100994211 100995377 -81419865 + L1PA14 LINE L1 4987 6159 -2 705 319 78 64 chr6 100996416 100997277 -81417965 + L2 LINE L2 2442 3313 0 21 71 0 0 chr6 100997411 100997453 -81417789 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr6 100997482 100997531 -81417711 + AT_rich Low_complexity Low_complexity 1 49 0 2226 110 0 0 chr6 100997540 100997832 -81417410 - AluSx SINE Alu -20 292 1 235 200 0 20 chr6 100998247 100998297 -81416945 + L2 LINE L2 3262 3310 -3 250 418 29 6 chr6 100998516 100998686 -81416556 - MIR3 SINE MIR -5 203 30 1946 116 14 0 chr6 101000376 101000660 -81414582 + AluSc SINE Alu 3 290 -19 22 0 0 0 chr6 101001932 101001954 -81413288 + AT_rich Low_complexity Low_complexity 1 22 0 2971 122 69 13 chr6 101002163 101002578 -81412664 + MER41A LTR ERV1 3 454 -100 2096 105 3 29 chr6 101002578 101002892 -81412350 - AluSq SINE Alu -1 312 7 2971 122 69 13 chr6 101002892 101002999 -81412243 + MER41A LTR ERV1 454 554 0 370 226 32 102 chr6 101003353 101003539 -81411703 - MER5B DNA MER1_type -1 177 5 270 374 36 14 chr6 101004156 101004295 -81410947 - L3 LINE CR1 -124 1453 1312 1144 212 0 9 chr6 101004318 101004535 -81410707 - MER58A DNA MER1_type -8 216 2 332 324 163 26 chr6 101004566 101004872 -81410370 - L3 LINE CR1 -319 1258 911 279 339 41 8 chr6 101005524 101005645 -81409597 - L2 LINE L2 -32 3240 3116 840 291 174 18 chr6 101005754 101006201 -81409041 - MLT1G1 LTR MaLR 0 595 79 384 241 5 118 chr6 101006424 101006619 -81408623 - MLT1G1-int LTR MaLR -182 1189 1017 2098 116 0 7 chr6 101006834 101007128 -81408114 - AluSc SINE Alu -17 292 1 23 0 0 0 chr6 101007136 101007159 -81408083 + AT_rich Low_complexity Low_complexity 1 23 0 1367 147 193 14 chr6 101007361 101007646 -81407596 + MER1B DNA MER1_type 2 337 0 615 247 23 11 chr6 101007757 101007931 -81407311 - MLT1G1-int LTR MaLR -793 578 403 225 254 0 0 chr6 101007931 101007990 -81407252 - MLT1F1 LTR MaLR -508 59 1 24 32 0 0 chr6 101008092 101008123 -81407119 + AT_rich Low_complexity Low_complexity 1 31 0 210 340 98 13 chr6 101008178 101008331 -81406911 - L3 LINE CR1 -1181 396 231 197 308 0 0 chr6 101008563 101008615 -81406627 - L3b LINE CR1 -2 1581 1530 1795 254 113 13 chr6 101008821 101009450 -81405792 + Zaphod DNA AcHobo 2406 3097 -934 1348 233 231 75 chr6 101009617 101010476 -81404766 + Zaphod DNA AcHobo 3026 4018 -13 423 271 83 14 chr6 101010490 101010634 -81404608 + L2 LINE L2 2239 2392 -922 5780 127 51 29 chr6 101010642 101011311 -81403931 + Tigger3b DNA MER2_type 1 713 -2315 2068 117 0 13 chr6 101011311 101011610 -81403632 + AluSc SINE Alu 1 295 -14 5780 127 51 29 chr6 101011610 101012139 -81403103 + Tigger3b DNA MER2_type 713 1229 -2 393 351 142 0 chr6 101012228 101012439 -81402803 + L2 LINE L2 2518 2758 -556 192 40 0 0 chr6 101013201 101013226 -81402016 + (TC)n Simple_repeat Simple_repeat 2 26 0 980 265 152 18 chr6 101013592 101014034 -81401208 + MLT1D LTR MaLR 3 503 -2 216 97 0 0 chr6 101014093 101014124 -81401118 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr6 101015074 101015105 -81400137 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr6 101015240 101015275 -81399967 + AT_rich Low_complexity Low_complexity 1 35 0 334 250 121 0 chr6 101015648 101015764 -81399478 + LTR58 LTR ERV1 300 429 -250 343 331 8 15 chr6 101016922 101017052 -81398190 + MIR SINE MIR 17 145 -117 26 30 0 0 chr6 101017201 101017234 -81398008 + AT_rich Low_complexity Low_complexity 1 33 0 1671 186 126 31 chr6 101017303 101017748 -81397494 + LTR2B LTR ERV1 4 490 0 182 263 18 0 chr6 101017860 101017917 -81397325 + MIR SINE MIR 92 149 -113 633 194 167 7 chr6 101018357 101018501 -81396741 - MER5A DNA MER1_type -2 187 21 1915 199 63 5 chr6 101018944 101019356 -81395886 + MER67D LTR ERV1 79 514 0 333 307 55 0 chr6 101019929 101020056 -81395186 + MER94 DNA DNA 1 134 0 302 123 215 0 chr6 101021900 101021956 -81393286 + MLT2B1 LTR ERVL 1 70 -445 824 158 180 44 chr6 101021956 101022245 -81392997 - LTR49 LTR ERV1 0 596 304 * 998 171 249 0 chr6 101022224 101022441 -81392801 - LTR29 LTR ERV1 -350 272 2 1879 197 50 63 chr6 101022443 101022869 -81392373 + MLT2B1 LTR ERVL 65 486 -34 441 0 0 0 chr6 101022869 101022918 -81392324 + (TG)n Simple_repeat Simple_repeat 1 49 0 1879 197 50 63 chr6 101022918 101022953 -81392289 + MLT2B1 LTR ERVL 486 520 0 59 65 0 0 chr6 101023072 101023180 -81392062 + AT_rich Low_complexity Low_complexity 1 108 0 331 301 59 22 chr6 101023394 101023554 -81391688 + MIR SINE MIR 30 196 -64 21 0 0 0 chr6 101023903 101023924 -81391318 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr6 101025750 101025801 -81389441 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr6 101026105 101026129 -81389113 + AT_rich Low_complexity Low_complexity 1 24 0 491 288 104 29 chr6 101026133 101026442 -81388800 - MER110 LTR ERV1 0 491 160 2085 125 98 15 chr6 101026476 101026812 -81388430 - THE1B LTR MaLR 0 364 1 917 107 0 0 chr6 101026812 101026952 -81388290 - THE1B-int LTR MaLR 0 1580 1441 6778 204 48 48 chr6 101027052 101028585 -81386657 - L1M2a LINE L1 -5629 1539 8 38 0 0 0 chr6 101028820 101028858 -81386384 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr6 101028987 101029025 -81386217 + AT_rich Low_complexity Low_complexity 1 38 0 1283 231 0 16 chr6 101030410 101030730 -81384512 - MER33 DNA MER1_type -9 315 1 283 167 14 28 chr6 101031201 101031273 -81383969 + GA-rich Low_complexity Low_complexity 3 73 0 192 111 0 0 chr6 101031286 101031322 -81383920 + (CAG)n Simple_repeat Simple_repeat 2 37 0 257 246 0 29 chr6 101031355 101031424 -81383818 + GA-rich Low_complexity Low_complexity 5 71 0 333 331 159 39 chr6 101031608 101031992 -81383250 - L3 LINE CR1 -70 1507 1078 316 320 80 32 chr6 101032060 101032185 -81383057 - L2 LINE L2 0 3272 3142 666 348 108 24 chr6 101032264 101032847 -81382395 - L3 LINE CR1 -636 941 310 3190 134 2 2 chr6 101032905 101033375 -81381867 + MER1A DNA MER1_type 60 529 0 5373 129 63 16 chr6 101033375 101034336 -81380906 + Tigger3b DNA MER2_type 224 1230 -1 229 171 53 13 chr6 101034358 101034434 -81380808 + (TATAA)n Simple_repeat Simple_repeat 4 82 0 21 36 0 0 chr6 101035089 101035117 -81380125 + AT_rich Low_complexity Low_complexity 1 28 0 356 320 110 0 chr6 101035459 101035687 -81379555 - MIR SINE MIR -2 260 8 316 377 13 6 chr6 101036999 101037158 -81378084 + MIR SINE MIR 8 167 -95 2220 209 31 25 chr6 101037159 101037672 -81377570 + LTR40a LTR ERVL 3 518 -1 1642 206 3 6 chr6 101039123 101039434 -81375808 + AluSx SINE Alu 1 310 -2 290 352 48 8 chr6 101039933 101040058 -81375184 + L2 LINE L2 3137 3266 -6 227 250 48 24 chr6 101041150 101041234 -81374008 + HsTC2 DNA Tc2 1 86 -1812 422 314 110 25 chr6 101042097 101042416 -81372826 + L1MEd LINE L1 26 371 -5748 1978 192 28 13 chr6 101042436 101042826 -81372416 + MSTD LTR MaLR 1 396 0 5008 242 70 33 chr6 101042828 101044191 -81371051 + MSTD-int LTR MaLR 2 1415 -320 23 0 0 0 chr6 101044389 101044412 -81370830 + AT_rich Low_complexity Low_complexity 1 23 0 1817 119 22 4 chr6 101044419 101044696 -81370546 - THE1C LTR MaLR 0 375 94 1103 178 51 20 chr6 101044696 101044949 -81370293 - Tigger1 DNA MER2_type -80 2338 2078 2401 127 19 0 chr6 101044992 101045371 -81369871 - Tigger1 DNA MER2_type -331 2087 1702 * 2614 194 8 2 chr6 101045369 101045849 -81369393 - Tigger1 DNA MER2_type -1934 484 2 1467 200 0 35 chr6 101046158 101046482 -81368760 - AluJb SINE Alu 0 316 3 593 209 90 23 chr6 101047621 101047798 -81367444 - MER3 DNA MER1_type -18 191 3 1094 115 44 11 chr6 101048137 101048319 -81366923 + L1MA4 LINE L1 5694 5881 -419 2277 103 0 3 chr6 101048512 101048824 -81366418 - AluY SINE Alu 0 311 1 2088 135 0 0 chr6 101049069 101049365 -81365877 - AluSx SINE Alu -16 296 1 1596 159 36 4 chr6 101049396 101049672 -81365570 + AluJo SINE Alu 1 285 -27 31 44 0 0 chr6 101051644 101051689 -81363553 + AT_rich Low_complexity Low_complexity 1 45 0 240 35 0 0 chr6 101052407 101052436 -81362806 + (A)n Simple_repeat Simple_repeat 1 29 0 328 108 62 0 chr6 101053415 101053480 -81361762 + CT-rich Low_complexity Low_complexity 2 70 0 1867 160 19 43 chr6 101053878 101054253 -81360989 + MER47A DNA MER2_type 1 366 0 807 168 140 11 chr6 101055303 101055482 -81359760 - MLT1F LTR MaLR -1 541 340 383 221 19 58 chr6 101055500 101055604 -81359638 + MLT1E2 LTR MaLR 1 100 -526 575 229 94 131 chr6 101055672 101055947 -81359295 - MLT1F LTR MaLR -249 293 29 1109 233 144 48 chr6 101056971 101057425 -81357817 + MLT1D LTR MaLR 3 393 -16 1441 212 77 26 chr6 101057669 101058046 -81357196 + MSTD LTR MaLR 1 396 0 314 235 20 31 chr6 101058455 101058553 -81356689 + GA-rich Low_complexity Low_complexity 4 100 0 262 259 134 54 chr6 101058621 101058733 -81356509 + MIR SINE MIR 28 148 -114 1644 224 53 31 chr6 101059337 101059788 -81355454 + MLT1C LTR MaLR 1 461 -6 289 214 62 45 chr6 101060194 101060306 -81354936 + L1MCa LINE L1 1093 1206 -5220 3117 74 8 1 chr6 101060335 101060739 -81354503 - MLT2A1 LTR ERVL -43 477 1 960 181 35 3 chr6 101060756 101060962 -81354280 + L1MC3 LINE L1 6397 6634 -1174 32 81 0 0 chr6 101061385 101061459 -81353783 + AT_rich Low_complexity Low_complexity 1 74 0 288 324 10 10 chr6 101061515 101061673 -81353569 + L1M4 LINE L1 2676 2833 -3313 300 359 35 23 chr6 101061984 101062240 -81353002 + L1MEd LINE L1 555 813 -5306 2097 143 0 6 chr6 101062274 101062588 -81352654 + AluSx SINE Alu 1 312 0 401 259 49 24 chr6 101062678 101062883 -81352359 + L1MEd LINE L1 891 1100 -5019 226 281 16 25 chr6 101062983 101063104 -81352138 + L1MEd LINE L1 1273 1392 -4918 769 254 40 0 chr6 101063316 101063517 -81351725 + U3 snRNA snRNA 1 209 -8 640 292 83 31 chr6 101063544 101063968 -81351274 + L1MEd LINE L1 2457 2858 -3271 1493 58 0 0 chr6 101063968 101064158 -81351084 - L1PA5 LINE L1 0 6154 5965 640 292 83 31 chr6 101064158 101064526 -81350716 + L1MEd LINE L1 2858 3322 -2807 21 0 0 0 chr6 101064527 101064548 -81350694 + AT_rich Low_complexity Low_complexity 1 21 0 2004 122 3 17 chr6 101064564 101064905 -81350337 + AluSq SINE Alu 7 313 0 892 184 41 18 chr6 101066168 101066386 -81348856 - L1MB3 LINE L1 -2 6181 5959 398 174 0 88 chr6 101066394 101066510 -81348732 - L1MB3 LINE L1 -1114 5032 4930 1276 265 21 9 chr6 101066566 101066985 -81348257 - L1MB3 LINE L1 -1207 4939 4516 12080 203 36 26 chr6 101067088 101067291 -81347951 - L1M4 LINE L1 -1494 4888 4689 1637 184 57 25 chr6 101067291 101067645 -81347597 + MLT1A1 LTR MaLR 1 365 0 12080 203 36 26 chr6 101067645 101069945 -81345297 - L1M4 LINE L1 -1693 4689 2414 1808 157 7 0 chr6 101069945 101070225 -81345017 + AluSx SINE Alu 1 282 -30 12080 203 36 26 chr6 101070225 101070904 -81344338 - L1M4 LINE L1 -3968 2414 1744 207 0 0 0 chr6 101070904 101070927 -81344315 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 12080 203 36 26 chr6 101070927 101072558 -81342684 - L1M4 LINE L1 -4638 1744 20 261 0 0 0 chr6 101073180 101073209 -81342033 + (TG)n Simple_repeat Simple_repeat 1 29 0 2116 98 7 26 chr6 101073575 101073880 -81341362 - AluY SINE Alu -12 299 1 1282 103 10 0 chr6 101073880 101074074 -81341168 + MER4A-int LTR ERV1 2300 2495 -4103 1296 167 71 0 chr6 101074074 101074314 -81340928 - LTR8 LTR ERV1 -434 257 1 1881 125 56 112 chr6 101074314 101074734 -81340508 + MER4A-int LTR ERV1 1738 2180 -4418 2036 121 0 0 chr6 101074734 101075007 -81340235 + AluSc SINE Alu 5 277 -32 605 47 0 12 chr6 101075007 101075093 -81340149 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 1881 125 56 112 chr6 101075093 101075118 -81340124 + MER4A-int LTR ERV1 2178 3150 -3448 500 173 25 17 chr6 101075119 101075246 -81339996 + MER4A-int LTR ERV1 3550 4307 -2369 * 16667 104 43 20 chr6 101075245 101076324 -81338918 + MER4A-int LTR ERV1 3837 4890 -1708 2045 112 14 0 chr6 101076324 101076610 -81338632 - AluSx SINE Alu -22 290 1 16667 104 43 20 chr6 101076610 101078216 -81337026 + MER4A-int LTR ERV1 4890 6584 -14 555 130 10 30 chr6 101078230 101078330 -81336912 + MER4A LTR ERV1 1 98 -566 1634 131 5 82 chr6 101078330 101078704 -81336538 + MER4A LTR ERV1 261 664 0 2399 57 10 0 chr6 101079277 101079578 -81335664 - AluY SINE Alu -7 304 1 22 35 0 0 chr6 101079675 101079704 -81335538 + AT_rich Low_complexity Low_complexity 1 29 0 237 381 8 45 chr6 101081947 101082081 -81333161 + L2 LINE L2 2963 3091 -181 23 0 0 0 chr6 101082161 101082184 -81333058 + AT_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr6 101083243 101083297 -81331945 + AT_rich Low_complexity Low_complexity 1 54 0 343 272 17 17 chr6 101083519 101083699 -81331543 + (TA)n Simple_repeat Simple_repeat 1 180 0 2084 116 3 3 chr6 101084162 101084463 -81330779 + AluSx SINE Alu 1 301 -11 31 68 0 0 chr6 101085163 101085222 -81330020 + AT_rich Low_complexity Low_complexity 1 59 0 21 36 0 0 chr6 101086021 101086049 -81329193 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr6 101087073 101087105 -81328137 + AT_rich Low_complexity Low_complexity 1 32 0 7680 140 19 8 chr6 101087205 101088503 -81326739 - THE1B-int LTR MaLR -269 1311 1 2076 118 102 6 chr6 101088503 101088835 -81326407 - THE1B LTR MaLR 0 364 1 310 217 24 36 chr6 101088860 101088943 -81326299 - MER110A LTR ERV1 -292 176 95 312 70 0 0 chr6 101089067 101089110 -81326132 + (GA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr6 101091449 101091472 -81323770 + AT_rich Low_complexity Low_complexity 1 23 0 309 51 0 0 chr6 101091630 101091669 -81323573 + (TG)n Simple_repeat Simple_repeat 2 40 0 2360 68 6 6 chr6 101091736 101092047 -81323195 + AluY SINE Alu 1 311 0 698 307 59 13 chr6 101093028 101093266 -81321976 - MIR SINE MIR 0 262 14 23 33 0 0 chr6 101093653 101093683 -81321559 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr6 101093984 101094015 -81321227 + AT_rich Low_complexity Low_complexity 1 31 0 307 355 54 42 chr6 101094385 101094551 -81320691 - MIR3 SINE MIR -21 187 20 4222 177 30 24 chr6 101094749 101095539 -81319703 - L1MCa LINE L1 -5612 814 20 225 317 161 10 chr6 101095552 101095665 -81319577 + MIR3 SINE MIR 30 160 -48 181 302 70 47 chr6 101096545 101096631 -81318611 - L2 LINE L2 -14 3258 3171 533 365 71 33 chr6 101099006 101099587 -81315655 + L2 LINE L2 2310 2912 -402 21824 94 11 3 chr6 101099800 101102827 -81312415 + L1P LINE L1 1 3051 -3095 256 300 36 73 chr6 101103672 101103782 -81311460 + LTR67 LTR ERVL 95 200 -357 251 273 58 16 chr6 101104040 101104161 -81311081 - L1P5 LINE L1 -684 5470 5345 1954 190 48 21 chr6 101104181 101104512 -81310730 + MSTD LTR MaLR 8 352 -44 2270 119 14 8 chr6 101104512 101104865 -81310377 + THE1A LTR MaLR 1 355 0 1954 190 48 21 chr6 101104865 101104912 -81310330 + MSTD LTR MaLR 352 396 0 396 372 163 15 chr6 101105268 101105666 -81309576 + L3 LINE CR1 88 544 -1033 22 35 0 0 chr6 101105782 101105811 -81309431 + AT_rich Low_complexity Low_complexity 1 29 0 3101 158 77 40 chr6 101105829 101106454 -81308788 - L1MA8 LINE L1 -18 6273 5619 1213 223 27 41 chr6 101106454 101106746 -81308496 - AluJo SINE Alu -22 290 3 3101 158 77 40 chr6 101106746 101106811 -81308431 - L1MA8 LINE L1 -672 5619 5558 22 0 0 0 chr6 101106832 101106854 -81308388 + AT_rich Low_complexity Low_complexity 1 22 0 818 194 4 127 chr6 101106873 101107110 -81308132 + AluJo SINE Alu 4 211 -101 586 113 40 13 chr6 101107131 101107281 -81307961 + GA-rich Low_complexity Low_complexity 4 157 0 195 100 0 0 chr6 101107286 101107316 -81307926 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 6190 198 48 1 chr6 101107333 101109002 -81306240 - L1M4 LINE L1 -1526 5580 3833 226 216 80 88 chr6 101109002 101109127 -81306115 + LTR47B LTR ERVL 295 418 -25 23 33 0 0 chr6 101109264 101109294 -81305948 + AT_rich Low_complexity Low_complexity 1 30 0 3645 232 238 35 chr6 101110570 101111121 -81304121 - L1M4 LINE L1 -4312 2794 2356 311 0 26 0 chr6 101111121 101111160 -81304082 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 1419 191 52 4 chr6 101111163 101111430 -81303812 - AluJo SINE Alu -30 282 3 3645 232 238 35 chr6 101111430 101113471 -81301771 - L1M4 LINE L1 -4751 2355 1 804 287 50 6 chr6 101113627 101113965 -81301277 - Charlie7 DNA MER1_type -1876 736 384 255 284 74 34 chr6 101114113 101114261 -81300981 - Charlie7 DNA MER1_type -2456 156 3 449 200 11 21 chr6 101114264 101114359 -81300883 + L3 LINE CR1 646 739 -838 549 303 112 52 chr6 101114821 101115187 -81300055 + L3 LINE CR1 1188 1575 -2 967 213 57 124 chr6 101117433 101118014 -81297228 + MER34 LTR ERV1 1 542 0 21 36 0 0 chr6 101118161 101118189 -81297053 + AT_rich Low_complexity Low_complexity 1 28 0 213 237 31 21 chr6 101118491 101118588 -81296654 + (TA)n Simple_repeat Simple_repeat 2 99 0 1418 142 42 137 chr6 101118616 101118975 -81296267 + MER7A DNA MER2_type 1 323 -23 205 183 33 0 chr6 101119088 101119148 -81296094 + (TA)n Simple_repeat Simple_repeat 1 62 0 1199 173 24 40 chr6 101120154 101120403 -81294839 - AluJo SINE Alu -67 245 1 183 80 0 0 chr6 101121365 101121390 -81293852 + (T)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr6 101122574 101122604 -81292638 + AT_rich Low_complexity Low_complexity 1 30 0 184 184 53 0 chr6 101122959 101122997 -81292245 + L2 LINE L2 3262 3301 -12 270 225 117 33 chr6 101124144 101124264 -81290978 - L1ME3A LINE L1 -5 6165 6036 718 248 71 24 chr6 101124308 101124672 -81290570 - L1ME3A LINE L1 -632 5530 5155 377 261 143 6 chr6 101124885 101125170 -81290072 - L1ME3A LINE L1 -2028 4118 3793 31 0 0 0 chr6 101126080 101126111 -81289131 + AT_rich Low_complexity Low_complexity 1 31 0 1085 100 19 0 chr6 101126200 101126360 -81288882 + L1PA11 LINE L1 6011 6173 -1 606 223 35 106 chr6 101126408 101126811 -81288431 - MSTD LTR MaLR 0 396 3 321 26 0 0 chr6 101127272 101127310 -81287932 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 306 345 23 61 chr6 101127319 101127580 -81287662 + L2 LINE L2 2522 2772 -542 223 359 28 38 chr6 101127870 101127976 -81287266 + L2 LINE L2 3168 3272 0 21 57 0 0 chr6 101128221 101128256 -81286986 + AT_rich Low_complexity Low_complexity 1 35 0 234 342 54 9 chr6 101130735 101130846 -81284396 - L2 LINE L2 -55 3258 3143 203 196 22 0 chr6 101131414 101131460 -81283782 + CT-rich Low_complexity Low_complexity 2 48 0 218 208 0 0 chr6 101132747 101132795 -81282447 + T-rich Low_complexity Low_complexity 2 49 0 559 289 116 66 chr6 101132905 101132992 -81282250 + MLT1K LTR MaLR 208 289 -299 2257 88 3 7 chr6 101132992 101133297 -81281945 + AluSc SINE Alu 1 304 -5 559 289 116 66 chr6 101133297 101133572 -81281670 + MLT1K LTR MaLR 289 588 0 477 284 86 78 chr6 101134606 101134863 -81280379 - MIR SINE MIR 0 262 4 1859 205 35 2 chr6 101135074 101135527 -81279715 - L1 LINE L1 -1445 4701 4234 961 148 0 11 chr6 101135537 101135719 -81279523 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 969 237 217 0 chr6 101135721 101135970 -81279272 - AluJo SINE Alu -8 304 2 963 224 5 0 chr6 101135971 101136163 -81279079 - L1 LINE L1 -1897 4249 4057 3614 164 35 77 chr6 101136164 101137834 -81277408 + L1MA10 LINE L1 4716 6321 -13 181 327 0 0 chr6 101140036 101140091 -81275151 - MIR3 SINE MIR -41 167 113 185 294 29 0 chr6 101143754 101143822 -81271420 - MER5B DNA MER1_type -18 160 91 188 33 0 33 chr6 101144047 101144077 -81271165 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 737 231 130 120 chr6 101144154 101144731 -81270511 - MLT1G LTR MaLR -12 578 1 24 0 0 0 chr6 101145019 101145043 -81270199 + AT_rich Low_complexity Low_complexity 1 24 0 2079 191 7 22 chr6 101145052 101145512 -81269730 - L1MB4 LINE L1 -3 6177 5725 4571 168 16 26 chr6 101145512 101146759 -81268483 - L1MA3 LINE L1 -230 6075 4855 6511 189 12 2 chr6 101146767 101147386 -81267856 - L1MB4 LINE L1 -1115 5031 4420 189 0 0 0 chr6 101147386 101147407 -81267835 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 6511 189 12 2 chr6 101147407 101148071 -81267171 - L1MB4 LINE L1 -1726 4420 3734 23 33 0 0 chr6 101148918 101148948 -81266294 + AT_rich Low_complexity Low_complexity 1 30 0 429 264 82 24 chr6 101149151 101149359 -81265883 + L1ME4a LINE L1 5708 5927 -194 267 31 0 0 chr6 101149361 101149393 -81265849 + (CA)n Simple_repeat Simple_repeat 2 33 0 212 220 20 0 chr6 101149401 101149451 -81265791 + (TA)n Simple_repeat Simple_repeat 1 51 0 2317 174 29 14 chr6 101149461 101149875 -81265367 + MSTB LTR MaLR 1 420 -6 1939 146 39 39 chr6 101150057 101150421 -81264821 + THE1B LTR MaLR 1 364 0 40 0 0 0 chr6 101151158 101151198 -81264044 + AT_rich Low_complexity Low_complexity 1 40 0 1965 141 10 16 chr6 101151269 101151574 -81263668 + AluSx SINE Alu 1 303 -9 1365 240 19 32 chr6 101153143 101153522 -81261720 - MLT1A2 LTR MaLR 0 374 1 1151 238 60 64 chr6 101154677 101155210 -81260032 + L1ME3A LINE L1 5634 6164 -6 2289 127 13 19 chr6 101155592 101155969 -81259273 - THE1C LTR MaLR 0 375 1 9557 116 35 45 chr6 101155970 101157563 -81257679 - THE1C-int LTR MaLR -1 1579 3 2708 80 8 19 chr6 101157565 101157942 -81257300 - THE1C LTR MaLR 0 375 3 1478 179 29 68 chr6 101158016 101158396 -81256846 + MLT1A1 LTR MaLR 1 365 0 553 204 0 0 chr6 101158623 101158716 -81256526 - LTR32 LTR ERVL -2 469 377 284 247 25 0 chr6 101158834 101158915 -81256327 + L1MA4A LINE L1 6057 6139 -164 3824 284 36 29 chr6 101158922 101160240 -81255002 - HERVL32 LTR ERVL -2090 1328 1 709 198 73 17 chr6 101160240 101160417 -81254825 - LTR32 LTR ERVL 0 471 285 325 91 0 0 chr6 101160433 101160477 -81254765 - LTR32 LTR ERVL -409 62 19 266 291 23 23 chr6 101160828 101160914 -81254328 + L2 LINE L2 3184 3269 -3 1998 154 15 0 chr6 101162511 101163080 -81252162 + L1PA8A LINE L1 10 624 -5251 4190 89 6 17 chr6 101163080 101163774 -81251468 - L1P LINE L1 -2220 3926 3116 * 23574 162 22 23 chr6 101163770 101169532 -81245710 + L1PA8A LINE L1 615 6442 -4 1421 262 70 42 chr6 101170677 101171204 -81244038 - MLT1F LTR MaLR 0 542 1 277 319 0 0 chr6 101171321 101171393 -81243849 + MIR3 SINE MIR 128 199 -9 294 243 14 14 chr6 101172537 101172611 -81242631 + CT-rich Low_complexity Low_complexity 6 79 0 342 321 42 24 chr6 101172612 101172777 -81242465 + LTR33 LTR ERVL 95 262 -259 205 184 0 0 chr6 101173077 101173115 -81242127 + A-rich Low_complexity Low_complexity 3 40 0 28 29 0 0 chr6 101174031 101174066 -81241176 + AT_rich Low_complexity Low_complexity 1 35 0 986 257 63 93 chr6 101174095 101174616 -81240626 + MLT1H LTR MaLR 1 624 0 201 244 0 0 chr6 101174749 101174790 -81240452 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 462 162 36 9 chr6 101174792 101174903 -81240339 + GA-rich Low_complexity Low_complexity 3 116 0 1797 158 3 3 chr6 101175179 101175471 -81239771 - AluSx SINE Alu -20 292 1 23 0 0 0 chr6 101175480 101175503 -81239739 + AT_rich Low_complexity Low_complexity 1 23 0 273 302 56 56 chr6 101175512 101175638 -81239604 + L2 LINE L2 3141 3266 -6 21 0 0 0 chr6 101176339 101176360 -81238882 + AT_rich Low_complexity Low_complexity 1 21 0 2373 73 20 0 chr6 101177156 101177456 -81237786 + AluY SINE Alu 1 306 -5 418 276 135 0 chr6 101178175 101178331 -81236911 - MER5A DNA MER1_type -3 186 10 186 43 0 0 chr6 101178763 101178786 -81236456 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 261 0 0 0 chr6 101178835 101178864 -81236378 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 27 62 0 0 chr6 101179210 101179258 -81235984 + AT_rich Low_complexity Low_complexity 1 48 0 353 21 0 21 chr6 101180985 101181032 -81234210 + (TA)n Simple_repeat Simple_repeat 1 46 0 422 263 18 18 chr6 101181114 101181228 -81234014 + MER81 DNA DNA 1 114 0 350 304 0 0 chr6 101182367 101182469 -81232773 + MER94 DNA DNA 28 129 -5 323 284 108 10 chr6 101182648 101182750 -81232492 - L2 LINE L2 -3 3310 3199 191 95 32 48 chr6 101183265 101183328 -81231914 + T-rich Low_complexity Low_complexity 4 65 0 6414 19 3 0 chr6 101183329 101184074 -81231168 - L1PA2 LINE L1 -2 6153 5407 5197 27 0 0 chr6 101184074 101184703 -81230539 + L1PA2 LINE L1 4775 5403 -743 415 244 26 26 chr6 101185451 101185566 -81229676 - MLT1I LTR MaLR -17 392 278 298 234 0 0 chr6 101185634 101185698 -81229544 - MLT1I LTR MaLR -236 173 110 1802 157 3 26 chr6 101186885 101187191 -81228051 + AluSx SINE Alu 1 299 -13 203 242 76 0 chr6 101187463 101187529 -81227713 + MIR SINE MIR 98 168 -94 213 235 59 0 chr6 101188006 101188057 -81227185 + L2 LINE L2 3217 3270 -2 2514 46 0 7 chr6 101189497 101189800 -81225442 - AluY SINE Alu -10 301 1 368 303 66 0 chr6 101190692 101190814 -81224428 + MER94 DNA DNA 4 133 -1 26 50 0 0 chr6 101191979 101192019 -81223223 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr6 101192025 101192047 -81223195 + AT_rich Low_complexity Low_complexity 1 22 0 1579 198 3 17 chr6 101192050 101192343 -81222899 + AluJo SINE Alu 1 289 -23 5782 111 24 13 chr6 101192347 101193270 -81221972 - L1MA5A LINE L1 -10 6287 5355 1729 126 0 4 chr6 101194332 101194586 -81220656 - AluSx SINE Alu -2 310 58 270 283 81 33 chr6 101194891 101195163 -81220079 - HAL1b LINE L1 0 1348 1064 1066 262 135 6 chr6 101195340 101195829 -81219413 - HAL1b LINE L1 -497 851 300 39 22 0 0 chr6 101195833 101195879 -81219363 + AT_rich Low_complexity Low_complexity 1 46 0 219 284 15 0 chr6 101196039 101196106 -81219136 + (TA)n Simple_repeat Simple_repeat 2 69 0 22 56 0 0 chr6 101196298 101196334 -81218908 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr6 101196820 101196855 -81218387 + AT_rich Low_complexity Low_complexity 1 35 0 319 190 33 8 chr6 101197554 101197670 -81217572 + (TA)n Simple_repeat Simple_repeat 1 120 0 1821 200 0 6 chr6 101197670 101198015 -81217227 - MER2 DNA MER2_type -1 343 1 1165 259 187 73 chr6 101198019 101198488 -81216754 + L1M4 LINE L1 3465 3879 -2267 2346 71 0 3 chr6 101198488 101198796 -81216446 - L1PA7 LINE L1 -11 6143 5837 1165 259 187 73 chr6 101198796 101199015 -81216227 + L1M4 LINE L1 3879 4072 -2074 741 193 99 35 chr6 101199015 101199217 -81216025 - MER20 DNA MER1_type -4 215 1 1165 259 187 73 chr6 101199217 101200219 -81215023 + L1M4 LINE L1 4072 5348 -798 29 0 0 0 chr6 101200969 101200998 -81214244 + AT_rich Low_complexity Low_complexity 1 29 0 362 295 29 0 chr6 101201125 101201230 -81214012 - MIR SINE MIR -74 188 81 21 0 0 0 chr6 101204040 101204061 -81211181 + AT_rich Low_complexity Low_complexity 1 21 0 197 351 0 27 chr6 101204414 101204488 -81210754 + L2 LINE L2 3197 3268 -4 2092 126 15 9 chr6 101205378 101205712 -81209530 - L1PA13 LINE L1 -5 6158 5823 196 311 0 14 chr6 101205903 101205977 -81209265 + L2 LINE L2 3236 3308 -5 341 221 24 34 chr6 101206923 101207034 -81208208 - L1MC4 LINE L1 -1450 6545 6442 1811 130 38 54 chr6 101207253 101207623 -81207619 + THE1B LTR MaLR 1 364 0 7116 92 8 0 chr6 101207623 101208590 -81206652 + THE1B-int LTR MaLR 1 975 -605 1147 188 12 43 chr6 101208739 101208994 -81206248 + THE1B LTR MaLR 118 364 0 320 250 65 0 chr6 101209149 101209241 -81206001 - L1MD3 LINE L1 -25 7970 7873 42171 57 2 0 chr6 101209362 101215504 -81199738 - L1PA4 LINE L1 -3 6152 2 356 259 86 78 chr6 101215512 101215783 -81199459 - L1MEd LINE L1 -4862 1510 1262 27 29 0 0 chr6 101215815 101215849 -81199393 + AT_rich Low_complexity Low_complexity 1 34 0 1201 105 66 190 chr6 101216042 101216347 -81198895 - AluSq SINE Alu -45 268 2 492 253 27 60 chr6 101216697 101216847 -81198395 + MER106B DNA MER1_type 2 146 -913 282 95 0 0 chr6 101217200 101217242 -81198000 + (GA)n Simple_repeat Simple_repeat 2 43 0 20058 50 2 1 chr6 101218726 101221288 -81193954 + L1P LINE L1 1050 3613 -2533 11464 174 50 14 chr6 101221282 101223481 -81191761 - L1PA15-16 LINE L1 -3915 2934 716 * 1148 181 5 15 chr6 101223478 101223682 -81191560 - L1PA15-16 LINE L1 -6646 203 2 * 483 266 92 22 chr6 101225076 101225260 -81189982 - Charlie8 DNA MER1_type -1015 1402 108 235 200 130 78 chr6 101225664 101225779 -81189463 + LTR67 LTR ERVL 426 546 -11 636 196 38 0 chr6 101225983 101226116 -81189126 + FLAM_C SINE Alu 5 142 -1 394 343 59 18 chr6 101226344 101226563 -81188679 + MIR SINE MIR 16 243 -19 689 215 74 18 chr6 101226901 101227064 -81188178 + MER5B DNA MER1_type 2 173 -5 1017 175 18 63 chr6 101227452 101227675 -81187567 - MER20 DNA MER1_type -5 214 2 21 36 0 0 chr6 101227816 101227844 -81187398 + AT_rich Low_complexity Low_complexity 1 28 0 554 270 160 10 chr6 101227954 101228366 -81186876 - L1MC4 LINE L1 -1190 6618 6198 182 272 39 78 chr6 101228671 101228774 -81186468 + MER5A DNA MER1_type 11 109 -80 21 36 0 0 chr6 101228947 101228975 -81186267 + AT_rich Low_complexity Low_complexity 1 28 0 1012 259 56 44 chr6 101230218 101230558 -81184684 + LTR16C LTR ERVL 148 491 0 24 77 0 0 chr6 101231258 101231310 -81183932 + AT_rich Low_complexity Low_complexity 1 52 0 180 111 0 0 chr6 101231612 101231639 -81183603 + (CA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr6 101231683 101231705 -81183537 + AT_rich Low_complexity Low_complexity 1 22 0 279 0 0 0 chr6 101232197 101232228 -81183014 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2082 104 0 0 chr6 101232228 101232506 -81182736 - AluY SINE Alu -33 278 1 201 121 0 0 chr6 101234429 101234462 -81180780 + (A)n Simple_repeat Simple_repeat 1 33 0 28 29 0 0 chr6 101234658 101234693 -81180549 + AT_rich Low_complexity Low_complexity 1 35 0 189 213 0 0 chr6 101234776 101234823 -81180419 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 500 201 7 20 chr6 101234970 101235119 -81180123 + (TA)n Simple_repeat Simple_repeat 1 147 0 302 222 4 85 chr6 101235195 101235300 -81179942 - MIR SINE MIR -42 166 65 222 133 67 0 chr6 101235776 101235821 -81179421 + A-rich Low_complexity Low_complexity 5 52 0 308 149 0 15 chr6 101236278 101236345 -81178897 + (TA)n Simple_repeat Simple_repeat 1 66 0 222 62 0 0 chr6 101236486 101236518 -81178724 + (A)n Simple_repeat Simple_repeat 1 32 0 9277 198 12 20 chr6 101238441 101239095 -81176147 - L1PB4 LINE L1 -1 6155 5497 2226 112 0 3 chr6 101239095 101239399 -81175843 - AluSx SINE Alu -9 303 1 9277 198 12 20 chr6 101239399 101241587 -81173655 - L1PB4 LINE L1 -659 5497 3256 319 292 88 35 chr6 101242057 101242228 -81173014 + MIR SINE MIR 79 258 -4 900 171 7 0 chr6 101242337 101242483 -81172759 + FRAM SINE Alu 1 146 -30 2217 166 70 0 chr6 101242646 101243043 -81172199 - MSTA LTR MaLR 0 428 4 269 320 62 0 chr6 101243055 101243152 -81172090 + MIR SINE MIR 49 151 -111 295 239 19 18 chr6 101243279 101243536 -81171706 + GA-rich Low_complexity Low_complexity 1 257 0 5017 140 163 5 chr6 101244308 101245374 -81169868 - Tigger3b DNA MER2_type 0 1232 1 376 194 21 65 chr6 101246158 101246251 -81168991 + MLT1I LTR MaLR 232 320 -89 488 194 71 52 chr6 101247231 101247386 -81167856 + L1ME4a LINE L1 5960 6117 -4 27 0 0 0 chr6 101247612 101247639 -81167603 + AT_rich Low_complexity Low_complexity 1 27 0 213 359 64 0 chr6 101248823 101248901 -81166341 + L2 LINE L2 3190 3272 0 22 0 0 0 chr6 101249144 101249166 -81166076 + AT_rich Low_complexity Low_complexity 1 22 0 201 289 13 0 chr6 101251418 101251494 -81163748 + GA-rich Low_complexity Low_complexity 1 77 0 281 306 0 54 chr6 101251668 101251779 -81163463 + MIR SINE MIR 100 204 -58 525 16 0 0 chr6 101252489 101252551 -81162691 + (TG)n Simple_repeat Simple_repeat 1 62 0 527 280 140 0 chr6 101252988 101253181 -81162061 - LTR16A LTR ERVL -14 436 217 349 389 56 12 chr6 101253403 101253655 -81161587 - L2 LINE L2 -2202 1112 850 2373 51 0 3 chr6 101254045 101254339 -81160903 - AluY SINE Alu -18 293 1 21 0 0 0 chr6 101255135 101255156 -81160086 + AT_rich Low_complexity Low_complexity 1 21 0 272 302 56 56 chr6 101255857 101255983 -81159259 - L2 LINE L2 -6 3266 3141 26 52 0 17 chr6 101255992 101256024 -81159218 + AT_rich Low_complexity Low_complexity 1 33 -24 1974 138 3 0 chr6 101256024 101256315 -81158927 + AluSx SINE Alu 1 292 -20 26 52 0 17 chr6 101256315 101256340 -81158902 + AT_rich Low_complexity Low_complexity 33 57 0 972 264 5 5 chr6 101256517 101256733 -81158509 - MER58A DNA MER1_type 0 224 9 40868 64 4 2 chr6 101258725 101264857 -81150385 + L1PA5 LINE L1 11 6154 0 1366 186 72 14 chr6 101265601 101265720 -81149522 + AluJo SINE Alu 1 112 -200 225 0 0 0 chr6 101265720 101265745 -81149497 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1366 186 72 14 chr6 101265745 101265904 -81149338 + AluJo SINE Alu 112 295 -17 2770 108 23 20 chr6 101266027 101266470 -81148772 + MLT2A1 LTR ERVL 1 444 0 26 64 0 0 chr6 101266649 101266696 -81148546 + AT_rich Low_complexity Low_complexity 1 47 0 1594 184 14 10 chr6 101268192 101268485 -81146757 + AluJb SINE Alu 17 310 -2 180 235 0 0 chr6 101269927 101269961 -81145281 - L2 LINE L2 -11 3261 3228 492 296 141 29 chr6 101271040 101271317 -81143925 - MLT1I LTR MaLR 0 409 102 372 332 63 36 chr6 101271545 101271768 -81143474 - MIR SINE MIR -29 233 5 840 240 105 24 chr6 101271829 101272183 -81143059 + MER57A LTR ERV1 49 403 0 21 36 0 0 chr6 101274724 101274752 -81140490 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr6 101275221 101275247 -81139995 + AT_rich Low_complexity Low_complexity 1 26 0 329 214 19 48 chr6 101275474 101275577 -81139665 - L1MC4 LINE L1 -1339 6703 6604 456 268 30 6 chr6 101275577 101275745 -81139497 + (TA)n Simple_repeat Simple_repeat 2 173 0 391 366 33 25 chr6 101277999 101278242 -81137000 - MIR SINE MIR -15 247 3 5714 242 25 18 chr6 101278368 101279651 -81135591 + L1PA15-16 LINE L1 2 1260 -5589 3101 270 32 15 chr6 101279652 101280468 -81134774 + L1PA15-16 LINE L1 734 1563 -5286 806 244 0 0 chr6 101280454 101280647 -81134595 + L1PA15-16 LINE L1 1336 1528 -5322 * 430 213 41 47 chr6 101281034 101281203 -81134039 + L1PA15-16 LINE L1 1427 1594 -5256 446 212 20 20 chr6 101281234 101281380 -81133862 + GA-rich Low_complexity Low_complexity 1 146 0 5043 229 31 25 chr6 101281380 101282046 -81133196 + L1PA15-16 LINE L1 1617 2277 -4572 1673 155 57 41 chr6 101282046 101282413 -81132829 + THE1C LTR MaLR 1 373 -2 5043 229 31 25 chr6 101282413 101282986 -81132256 + L1PA15-16 LINE L1 2277 2872 -3977 2048 72 4 0 chr6 101282986 101283251 -81131991 + AluY SINE Alu 40 305 -6 5043 229 31 25 chr6 101283251 101283751 -81131491 + L1PA15-16 LINE L1 2872 3367 -3482 2064 194 36 60 chr6 101283726 101284341 -81130901 + L1 LINE L1 5062 5661 -1188 * 236 123 0 123 chr6 101284337 101284402 -81130840 + L1PA16 LINE L1 6109 6165 -1 * 1476 139 33 107 chr6 101284681 101285018 -81130224 - AluJb SINE Alu 0 312 1 1774 226 8 45 chr6 101287336 101287735 -81127507 - MLT1D LTR MaLR -121 384 1 266 329 22 36 chr6 101287742 101287879 -81127363 + MIR SINE MIR 128 262 0 1668 165 63 33 chr6 101288072 101288436 -81126806 - THE1C LTR MaLR 0 375 1 8984 149 18 31 chr6 101288436 101290036 -81125206 - THE1C-int LTR MaLR 0 1580 3 1643 192 54 31 chr6 101290038 101290392 -81124850 - THE1C LTR MaLR 0 375 14 745 192 32 0 chr6 101290747 101290872 -81124370 + AluJb SINE Alu 158 286 -26 2314 122 3 0 chr6 101290999 101291311 -81123931 + AluSp SINE Alu 1 313 0 1227 194 0 126 chr6 101291320 101291676 -81123566 + AluJb SINE Alu 1 311 -1 3106 192 21 5 chr6 101291679 101292258 -81122984 - LTR69 LTR ERVL 0 588 1 1760 161 46 40 chr6 101292315 101292688 -81122554 - THE1C LTR MaLR 0 375 1 9430 139 23 30 chr6 101292688 101294279 -81120963 - THE1C-int LTR MaLR 0 1580 1 2033 148 19 29 chr6 101294279 101294656 -81120586 - THE1C LTR MaLR 0 375 3 28262 62 1 1 chr6 101295573 101299185 -81116057 + L1P LINE L1 2 3613 -2533 6132 136 30 14 chr6 101299179 101300297 -81114945 - L1PA15-16 LINE L1 -3915 2934 1799 * 223 240 0 0 chr6 101300424 101300474 -81114768 - L2 LINE L2 0 3313 3264 2350 94 0 0 chr6 101300476 101300773 -81114469 - AluSx SINE Alu -15 297 1 1286 318 42 4 chr6 101300832 101301390 -81113852 - L2 LINE L2 -180 3133 2543 1202 214 8 0 chr6 101301448 101301682 -81113560 + MLT1A1 LTR MaLR 130 365 0 648 263 116 5 chr6 101301686 101301884 -81113358 - L2 LINE L2 -790 2524 2305 788 213 0 13 chr6 101301982 101302137 -81113105 + FRAM SINE Alu 1 152 -24 22 0 0 0 chr6 101302529 101302551 -81112691 + AT_rich Low_complexity Low_complexity 1 22 0 2284 88 0 0 chr6 101303160 101303456 -81111786 + AluY SINE Alu 1 296 -15 387 94 0 0 chr6 101303574 101303627 -81111615 + MADE1 DNA Mariner 28 80 0 27 0 0 0 chr6 101305655 101305682 -81109560 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr6 101306925 101306950 -81108292 + AT_rich Low_complexity Low_complexity 1 25 0 2236 268 143 46 chr6 101307187 101307332 -81107910 + L2 LINE L2 1713 1842 -1471 1457 144 45 96 chr6 101307332 101307644 -81107598 - AluJo SINE Alu -16 296 1 2236 268 143 46 chr6 101307644 101308891 -81106351 + L2 LINE L2 1842 3306 -7 385 218 0 13 chr6 101308923 101309001 -81106241 - L2 LINE L2 -681 2633 2557 410 176 148 9 chr6 101309213 101309321 -81105921 + MER53 DNA DNA 1 123 -66 29 0 0 0 chr6 101310580 101310609 -81104633 + AT_rich Low_complexity Low_complexity 1 29 0 2116 123 0 19 chr6 101311132 101311448 -81103794 - AluSq SINE Alu -3 310 1 220 292 28 28 chr6 101312343 101312415 -81102827 - MER5A DNA MER1_type -5 184 113 194 254 17 17 chr6 101312362 101312421 -81102821 + MER5A DNA MER1_type 36 94 -95 * 1929 156 0 0 chr6 101313238 101313521 -81101721 - AluJb SINE Alu -28 284 2 22 0 0 0 chr6 101313729 101313751 -81101491 + AT_rich Low_complexity Low_complexity 1 22 0 488 277 68 76 chr6 101314485 101314944 -81100298 + L1MC/D LINE L1 4798 5252 -894 426 292 39 81 chr6 101315019 101315177 -81100065 + L1MC/D LINE L1 5345 5508 -2300 2037 152 30 28 chr6 101315177 101315540 -81099702 + THE1B LTR MaLR 1 364 0 426 292 39 81 chr6 101315540 101315864 -81099378 + L1MC/D LINE L1 5508 5807 -2001 635 322 62 9 chr6 101319414 101319833 -81095409 - L1M4c LINE L1 -4907 1477 1037 552 74 0 12 chr6 101320202 101320283 -81094959 + MADE1 DNA Mariner 1 80 0 839 233 90 10 chr6 101320807 101321107 -81094135 - MER33 DNA MER1_type 0 324 1 427 357 33 33 chr6 101321840 101322022 -81093220 - MIR SINE MIR -80 182 1 2128 84 17 0 chr6 101323026 101323322 -81091920 + AluSc SINE Alu 1 301 -8 252 0 0 0 chr6 101323831 101323859 -81091383 + (TG)n Simple_repeat Simple_repeat 2 29 0 239 315 63 42 chr6 101323865 101324008 -81091234 + L1MC/D LINE L1 5612 5757 -2051 22 0 0 0 chr6 101324295 101324317 -81090925 + AT_rich Low_complexity Low_complexity 1 22 0 631 247 57 53 chr6 101324711 101324938 -81090304 - MLT1L LTR MaLR -384 231 4 22 0 0 0 chr6 101325015 101325037 -81090205 + AT_rich Low_complexity Low_complexity 1 22 0 1870 135 3 3 chr6 101325566 101325895 -81089347 + AluSx SINE Alu 1 329 0 22 70 0 0 chr6 101327611 101327654 -81087588 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr6 101327789 101327812 -81087430 + (TC)n Simple_repeat Simple_repeat 2 24 0 235 197 0 30 chr6 101328405 101328471 -81086771 + T-rich Low_complexity Low_complexity 2 65 0 219 232 0 0 chr6 101328511 101328567 -81086675 + GA-rich Low_complexity Low_complexity 5 60 0 772 160 0 0 chr6 101328872 101328997 -81086245 - FLAM_C SINE Alu -7 126 2 215 299 39 13 chr6 101331066 101331143 -81084099 - MIR SINE MIR -1 261 183 23 0 0 0 chr6 101331471 101331494 -81083748 + AT_rich Low_complexity Low_complexity 1 23 0 1180 112 0 0 chr6 101333075 101333236 -81082006 - AluSg/x SINE Alu -17 295 135 655 276 22 0 chr6 101333838 101334023 -81081219 + MIR SINE MIR 74 261 -1 24 0 0 0 chr6 101337016 101337040 -81078202 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 101337219 101337247 -81077995 + AT_rich Low_complexity Low_complexity 1 28 0 1528 219 45 14 chr6 101337672 101338024 -81077218 + MLT1A2 LTR MaLR 7 369 -5 444 281 65 7 chr6 101340412 101340551 -81074691 - MIR SINE MIR -87 175 29 341 301 38 8 chr6 101341593 101341726 -81073516 - MIR SINE MIR -72 190 54 616 196 63 58 chr6 101342555 101342744 -81072498 - MER34 LTR ERV1 0 542 353 1144 128 75 62 chr6 101342760 101342987 -81072255 + MER30 DNA MER1_type 1 230 0 935 274 25 87 chr6 101343035 101343392 -81071850 - MER34 LTR ERV1 -207 335 1 429 335 98 49 chr6 101343600 101343835 -81071407 - L1M4 LINE L1 -2205 3941 3719 198 71 0 0 chr6 101343835 101343863 -81071379 + (TG)n Simple_repeat Simple_repeat 2 29 0 429 335 98 49 chr6 101343863 101344180 -81071062 - L1M4 LINE L1 -2427 3719 3362 39 0 0 0 chr6 101344322 101344361 -81070881 + AT_rich Low_complexity Low_complexity 1 39 0 6860 84 173 4 chr6 101344791 101345848 -81069394 - MER11B LTR ERVK 0 1236 1 881 317 74 62 chr6 101345888 101346578 -81068664 - HAL1 LINE L1 -966 1541 844 371 351 39 19 chr6 101346953 101347161 -81068081 + MIR SINE MIR 46 257 -5 188 328 17 0 chr6 101347429 101347487 -81067755 - L2 LINE L2 -6 3307 3249 25 0 0 0 chr6 101349170 101349195 -81066047 + AT_rich Low_complexity Low_complexity 1 25 0 239 199 52 47 chr6 101349385 101349471 -81065771 - MLT1J2 LTR MaLR -121 367 253 2012 57 8 0 chr6 101349649 101349896 -81065346 + AluY SINE Alu 1 249 -62 415 51 0 0 chr6 101350021 101350080 -81065162 + AluSc SINE Alu 244 302 -7 2259 53 0 7 chr6 101350113 101350397 -81064845 + AluY SINE Alu 12 293 -18 349 389 56 12 chr6 101350787 101351039 -81064203 + L2 LINE L2 850 1112 -2202 527 280 140 0 chr6 101351261 101351454 -81063788 + LTR16A LTR ERVL 217 436 -14 525 16 0 0 chr6 101351890 101351952 -81063290 + (CA)n Simple_repeat Simple_repeat 1 62 0 281 306 0 54 chr6 101352662 101352773 -81062469 - MIR SINE MIR -58 204 100 201 289 13 0 chr6 101352947 101353023 -81062219 + CT-rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr6 101355275 101355297 -81059945 + AT_rich Low_complexity Low_complexity 1 22 0 213 359 64 0 chr6 101355544 101355622 -81059620 - L2 LINE L2 0 3272 3190 27 0 0 0 chr6 101356806 101356833 -81058409 + AT_rich Low_complexity Low_complexity 1 27 0 488 194 71 52 chr6 101357059 101357214 -81058028 - L1ME4a LINE L1 -4 6117 5960 262 268 0 0 chr6 101358038 101358109 -81057133 - L1MC4 LINE L1 -390 7652 7582 202 227 9 73 chr6 101358197 101358307 -81056935 + (TAAA)n Simple_repeat Simple_repeat 3 105 0 23 68 0 0 chr6 101358644 101358688 -81056554 + AT_rich Low_complexity Low_complexity 1 44 0 4179 222 76 16 chr6 101358887 101359985 -81055257 - L1MC4 LINE L1 -175 7867 6704 258 301 0 0 chr6 101359996 101360069 -81055173 + CT-rich Low_complexity Low_complexity 2 74 0 675 93 50 14 chr6 101360169 101360308 -81054934 + CT-rich Low_complexity Low_complexity 2 145 0 973 243 126 10 chr6 101360309 101360618 -81054624 - L1MC4a LINE L1 -1218 6590 6246 5587 187 50 16 chr6 101360982 101362800 -81052442 - L1MC1 LINE L1 0 6333 4470 253 202 139 81 chr6 101363095 101363268 -81051974 - MLT1H1 LTR MaLR -7 535 353 491 289 87 21 chr6 101363344 101363560 -81051682 - MLT1H1 LTR MaLR -309 246 18 24 32 0 0 chr6 101364743 101364774 -81050468 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr6 101365290 101365322 -81049920 + (CA)n Simple_repeat Simple_repeat 2 33 0 225 154 0 0 chr6 101365389 101365428 -81049814 + T-rich Low_complexity Low_complexity 1 39 0 679 294 110 0 chr6 101365850 101366068 -81049174 - MIR SINE MIR -5 257 16 12302 132 43 13 chr6 101366089 101368451 -81046791 - Tigger1 DNA MER2_type -3 2415 1 203 385 44 10 chr6 101368504 101368709 -81046533 - MIR SINE MIR -49 213 2 371 322 105 45 chr6 101369008 101369340 -81045902 - L2 LINE L2 -799 2515 2164 200 81 27 0 chr6 101370250 101370261 -81044981 + (TA)n Simple_repeat Simple_repeat 2 11 -28 1213 48 0 0 chr6 101370261 101370408 -81044834 + L1PA3 LINE L1 6001 6147 -8 200 81 27 0 chr6 101370408 101370433 -81044809 + (TA)n Simple_repeat Simple_repeat 11 39 0 411 38 0 0 chr6 101370433 101370486 -81044756 + (GA)n Simple_repeat Simple_repeat 2 54 0 198 191 0 0 chr6 101371680 101371722 -81043520 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 24 0 0 0 chr6 101372578 101372602 -81042640 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr6 101374655 101374687 -81040555 + AT_rich Low_complexity Low_complexity 1 32 0 899 330 72 27 chr6 101375192 101375749 -81039493 - L2 LINE L2 -439 2875 2294 564 316 172 6 chr6 101375768 101376122 -81039120 + L2 LINE L2 2648 3060 -253 236 214 0 0 chr6 101376161 101376203 -81039039 + MER45 DNA AcHobo 1540 1581 0 279 275 73 18 chr6 101376221 101376330 -81038912 + L2 LINE L2 3083 3197 -116 702 180 31 0 chr6 101376340 101376468 -81038774 + L1MC/D LINE L1 5643 5774 -559 403 287 126 35 chr6 101376478 101376764 -81038478 - L2 LINE L2 -1191 2123 1812 26 30 0 0 chr6 101377063 101377096 -81038146 + AT_rich Low_complexity Low_complexity 1 33 0 265 313 76 0 chr6 101377497 101377628 -81037614 + MIR SINE MIR 119 259 -3 1360 269 83 12 chr6 101377968 101378447 -81036795 - L1ME3 LINE L1 -42 6120 5608 895 247 4 85 chr6 101378486 101379060 -81036182 + L1ME LINE L1 5029 5569 -601 291 324 28 0 chr6 101379072 101379143 -81036099 - Charlie8 DNA MER1_type -2344 73 1 362 239 188 34 chr6 101379145 101379262 -81035980 - MIR SINE MIR -57 151 17 27 62 0 0 chr6 101379947 101379995 -81035247 + AT_rich Low_complexity Low_complexity 1 48 0 2311 70 3 10 chr6 101382640 101382938 -81032304 + AluY SINE Alu 1 296 -15 22 0 0 0 chr6 101383213 101383235 -81032007 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 101383268 101383289 -81031953 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 101385470 101385494 -81029748 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 101386602 101386628 -81028614 + AT_rich Low_complexity Low_complexity 1 26 0 2315 70 3 3 chr6 101386900 101387201 -81028041 - AluSc SINE Alu -8 301 1 14393 219 18 5 chr6 101390237 101394627 -81020615 - L1PB1 LINE L1 0 6867 2412 3585 81 2 0 chr6 101394647 101395114 -81020128 - MER41A LTR ERV1 -86 468 1 6364 129 11 9 chr6 101395144 101396709 -81018533 - L1PB1 LINE L1 -4494 2369 634 1060 186 5 0 chr6 101396709 101396903 -81018339 - L1PB1 LINE L1 -6663 200 6 5522 173 47 4 chr6 101397051 101399000 -81016242 - L1PA16 LINE L1 -10 6156 4125 201 293 74 116 chr6 101399129 101399344 -81015898 + MIR SINE MIR 57 262 0 347 341 62 85 chr6 101399353 101399484 -81015758 + L2 LINE L2 3012 3136 -136 7324 42 0 3 chr6 101399484 101400564 -81014678 - L1PA4 LINE L1 0 6155 5076 347 341 62 85 chr6 101400564 101400690 -81014552 + L2 LINE L2 3136 3263 -9 183 365 170 0 chr6 101400772 101400931 -81014311 - MIR SINE MIR -3 259 74 706 205 7 26 chr6 101401054 101401205 -81014037 - FRAM SINE Alu -27 149 2 2364 40 0 13 chr6 101402119 101402417 -81012825 + L1PA5 LINE L1 5861 6154 0 191 281 62 16 chr6 101402964 101403028 -81012214 - MER5C DNA MER1_type -245 79 13 280 344 25 8 chr6 101403108 101403230 -81012012 + LTR67 LTR ERVL 417 540 -17 23 33 0 0 chr6 101404261 101404291 -81010951 + AT_rich Low_complexity Low_complexity 1 30 0 367 314 67 85 chr6 101404464 101404805 -81010437 + MLT1I LTR MaLR 71 405 -4 438 230 40 10 chr6 101406618 101406718 -81008524 + MER5A DNA MER1_type 10 112 -77 200 206 152 87 chr6 101406892 101406984 -81008258 - L2 LINE L2 -27 3286 3189 321 118 0 0 chr6 101407665 101407716 -81007526 + (CA)n Simple_repeat Simple_repeat 2 52 0 333 241 301 15 chr6 101408479 101408612 -81006630 + MER5A DNA MER1_type 7 177 -12 356 357 65 5 chr6 101408650 101408835 -81006407 + MIR SINE MIR 46 241 -21 198 161 36 54 chr6 101409119 101409175 -81006067 - MER5C DNA MER1_type -10 314 260 322 272 175 0 chr6 101409287 101409390 -81005852 - MER5C DNA MER1_type -200 124 4 30 69 0 0 chr6 101409475 101409533 -81005709 + AT_rich Low_complexity Low_complexity 1 58 0 30 93 0 0 chr6 101409979 101410065 -81005177 + AT_rich Low_complexity Low_complexity 1 86 0 543 264 81 92 chr6 101411022 101411393 -81003849 - MLT1I LTR MaLR -3 406 40 1919 115 72 0 chr6 101411983 101412262 -81002980 + AluSx SINE Alu 6 304 -8 183 80 0 0 chr6 101412731 101412756 -81002486 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1896 197 10 37 chr6 101412758 101413018 -81002224 + MLT1B LTR MaLR 1 248 -142 8056 55 3 0 chr6 101413018 101413980 -81001262 + LTR5 LTR ERVK 2 966 -3 1896 197 10 37 chr6 101413980 101414120 -81001122 + MLT1B LTR MaLR 248 390 0 335 292 89 54 chr6 101415089 101415404 -80999838 - HAL1 LINE L1 -939 1568 1243 327 49 0 0 chr6 101415607 101415648 -80999594 + (TG)n Simple_repeat Simple_repeat 1 41 0 189 171 0 0 chr6 101415671 101415706 -80999536 + CT-rich Low_complexity Low_complexity 3 37 0 1202 89 13 0 chr6 101416169 101416327 -80998915 - AluSc SINE Alu -17 292 133 202 224 0 0 chr6 101416490 101416539 -80998703 + T-rich Low_complexity Low_complexity 1 49 0 267 306 97 8 chr6 101416577 101416711 -80998531 + MLT1L LTR MaLR 131 276 -339 180 0 0 0 chr6 101417591 101417611 -80997631 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 319 284 170 7 chr6 101418178 101418319 -80996923 + MIR3 SINE MIR 32 195 -13 345 47 0 0 chr6 101418568 101418611 -80996631 + (CA)n Simple_repeat Simple_repeat 2 44 0 221 259 0 19 chr6 101419830 101419884 -80995358 + CT-rich Low_complexity Low_complexity 4 56 0 7491 33 5 0 chr6 101420675 101421616 -80993626 - L1PA4 LINE L1 -1 6154 5213 28 29 0 0 chr6 101421889 101421924 -80993318 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 101424420 101424441 -80990801 + AT_rich Low_complexity Low_complexity 1 21 0 550 286 70 19 chr6 101424657 101424870 -80990372 + MIR SINE MIR 37 260 -2 222 221 44 0 chr6 101425269 101425337 -80989905 + (TA)n Simple_repeat Simple_repeat 1 71 0 1657 198 46 0 chr6 101425611 101425960 -80989282 + MLT1A1 LTR MaLR 1 365 0 406 348 125 10 chr6 101426270 101426575 -80988667 - L3 LINE CR1 -32 1545 1206 204 219 94 0 chr6 101426597 101426661 -80988581 + MER5B DNA MER1_type 76 145 -33 340 252 57 57 chr6 101426661 101426784 -80988458 - L1MC/D LINE L1 -2263 5545 5423 55 48 0 0 chr6 101426796 101426879 -80988363 + AT_rich Low_complexity Low_complexity 1 83 0 25 0 0 0 chr6 101427033 101427058 -80988184 + AT_rich Low_complexity Low_complexity 1 25 0 720 308 98 36 chr6 101427299 101428296 -80986946 - L1MC/D LINE L1 -1797 4349 3291 1229 67 0 6 chr6 101429228 101429392 -80985850 - L1PA7 LINE L1 -6 6148 5986 351 280 24 32 chr6 101430015 101430140 -80985102 + L2 LINE L2 3189 3312 -1 260 321 12 0 chr6 101431388 101431469 -80983773 + GA-rich Low_complexity Low_complexity 3 84 0 22 56 0 0 chr6 101431565 101431601 -80983641 + AT_rich Low_complexity Low_complexity 1 36 0 1876 160 0 3 chr6 101431986 101432292 -80982950 - AluSx SINE Alu -7 305 1 1426 68 0 16 chr6 101432310 101432501 -80982741 + L1PA7 LINE L1 5956 6143 -11 189 0 0 0 chr6 101432674 101432695 -80982547 + (CA)n Simple_repeat Simple_repeat 2 22 0 281 231 56 46 chr6 101432774 101432882 -80982360 - L1MC/D LINE L1 -1946 5862 5754 21 57 0 0 chr6 101433161 101433196 -80982046 + AT_rich Low_complexity Low_complexity 1 35 0 1463 188 103 9 chr6 101433266 101433596 -80981646 + MER46B DNA MER2_type 1 236 0 188 299 15 30 chr6 101433873 101433940 -80981302 - L3 LINE CR1 -980 597 532 379 334 142 30 chr6 101433978 101434310 -80980932 - L3 LINE CR1 -1125 452 84 511 227 9 9 chr6 101434313 101434423 -80980819 + L2 LINE L2 3200 3309 -4 4368 265 77 28 chr6 101435772 101437319 -80977923 + L1ME1 LINE L1 34 1680 -4716 2653 23 0 7 chr6 101437319 101437625 -80977617 - AluYa5 SINE Alu -7 304 1 4368 265 77 28 chr6 101437625 101437841 -80977401 + L1ME1 LINE L1 1680 1884 -4512 3522 115 0 4 chr6 101437842 101438355 -80976887 - MER9 LTR ERVK 0 511 1 4111 185 49 73 chr6 101438355 101439556 -80975686 - HERVK9 LTR ERVK 0 5916 4745 328 219 57 32 chr6 101439602 101439725 -80975517 + L1ME1 LINE L1 1879 2004 -4392 * 2322 196 88 8 chr6 101439722 101440348 -80974894 + L1ME1 LINE L1 4691 5366 -849 1283 143 32 54 chr6 101440360 101440639 -80974603 + L1MA6 LINE L1 6028 6300 0 26 0 0 0 chr6 101440642 101440668 -80974574 + AT_rich Low_complexity Low_complexity 1 26 0 435 199 23 23 chr6 101440700 101440831 -80974411 - L1MA10 LINE L1 0 6334 6204 42 0 0 0 chr6 101440834 101440876 -80974366 + AT_rich Low_complexity Low_complexity 1 42 0 3037 243 32 15 chr6 101440892 101441762 -80973480 + L1ME1 LINE L1 5364 6403 0 230 260 0 0 chr6 101441796 101441846 -80973396 + GA-rich Low_complexity Low_complexity 3 52 0 518 304 121 42 chr6 101443074 101443631 -80971611 + MLT1H1 LTR MaLR 2 555 0 5898 157 9 38 chr6 101444216 101445574 -80969668 - L1MA4 LINE L1 -7 6293 4974 * 8122 163 15 20 chr6 101445572 101446949 -80968293 + L1 LINE L1 3394 4764 -1382 508 227 118 0 chr6 101446949 101447068 -80968174 + FLAM_A SINE Alu 1 133 0 8122 163 15 20 chr6 101447068 101447259 -80967983 + L1 LINE L1 4764 4954 -1192 1756 90 0 0 chr6 101447475 101447720 -80967522 + L1PA13 LINE L1 5911 6155 -8 314 278 127 54 chr6 101447889 101448214 -80967028 + MLT1H1-int LTR MaLR 1028 1715 -20 774 292 114 38 chr6 101448270 101448743 -80966499 + MLT1H1 LTR MaLR 41 549 -6 297 192 55 0 chr6 101449964 101450037 -80965205 + L1MA7 LINE L1 6203 6279 -12 281 293 49 16 chr6 101450223 101450346 -80964896 - L2 LINE L2 -4 3309 3183 537 176 0 0 chr6 101450978 101451086 -80964156 + GA-rich Low_complexity Low_complexity 3 110 0 370 315 9 9 chr6 101451086 101451197 -80964045 + G-rich Low_complexity Low_complexity 3 113 0 568 276 122 19 chr6 101451569 101451783 -80963459 + MIR SINE MIR 22 257 -5 2457 57 3 3 chr6 101451922 101452223 -80963019 + AluSp SINE Alu 1 301 -12 484 291 21 43 chr6 101452484 101452718 -80962524 + Charlie7 DNA MER1_type 263 491 -2121 475 319 133 6 chr6 101452778 101453095 -80962147 + LTR16B LTR ERVL 1 357 -93 277 269 79 48 chr6 101453099 101453273 -80961969 + LTR16A LTR ERVL 292 447 -3 341 305 43 28 chr6 101453597 101453738 -80961504 - L2 LINE L2 -8 3305 3163 499 292 148 4 chr6 101453742 101453978 -80961264 + L2 LINE L2 2955 3224 -89 571 170 20 0 chr6 101454150 101454250 -80960992 + FLAM_A SINE Alu 32 133 -9 357 269 28 19 chr6 101454297 101454405 -80960837 + Charlie7 DNA MER1_type 595 703 -1909 8913 183 30 17 chr6 101454528 101457298 -80957944 - L1PB4 LINE L1 0 6156 3346 24 0 0 0 chr6 101457356 101457380 -80957862 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 101457947 101457969 -80957273 + AT_rich Low_complexity Low_complexity 1 22 0 1823 275 90 36 chr6 101458414 101459193 -80956049 + L2 LINE L2 1796 2616 -698 446 253 58 39 chr6 101459725 101459879 -80955363 + L2 LINE L2 2652 2808 -506 265 274 0 0 chr6 101459887 101459960 -80955282 - MLT1K LTR MaLR -382 206 134 1700 179 19 3 chr6 101460241 101460565 -80954677 + L1PA15 LINE L1 5837 6165 0 220 231 22 110 chr6 101463005 101463048 -80952194 - MIR3 SINE MIR -14 194 162 909 222 16 0 chr6 101463048 101463233 -80952009 + MER5A DNA MER1_type 2 189 0 220 231 22 110 chr6 101463233 101463280 -80951962 - MIR3 SINE MIR -46 162 112 7192 31 1 0 chr6 101463410 101464300 -80950942 - L1P LINE L1 -736 5419 4524 6307 33 1 0 chr6 101464300 101465050 -80950192 + L1PA4 LINE L1 5399 6152 -3 240 287 191 0 chr6 101465871 101465965 -80949277 + MIR SINE MIR 69 180 -82 882 171 7 20 chr6 101466284 101466436 -80948806 - AluJo SINE Alu -162 150 1 389 347 45 10 chr6 101467208 101467407 -80947835 + MIR SINE MIR 23 228 -34 598 271 41 12 chr6 101468428 101468598 -80946644 + MER5B DNA MER1_type 1 175 -3 21 0 0 0 chr6 101468780 101468801 -80946441 + AT_rich Low_complexity Low_complexity 1 21 0 214 200 0 0 chr6 101470405 101470445 -80944797 + T-rich Low_complexity Low_complexity 1 40 0 688 246 46 6 chr6 101471446 101471621 -80943621 - MIR SINE MIR -28 234 53 241 325 29 49 chr6 101473318 101473460 -80941782 - MIR SINE MIR -66 142 19 258 336 185 17 chr6 101474313 101474670 -80940572 - L2 LINE L2 -411 2903 2487 186 71 0 0 chr6 101474748 101474776 -80940466 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 331 328 159 10 chr6 101474926 101475127 -80940115 - MIR SINE MIR 0 262 32 311 304 79 83 chr6 101475832 101476085 -80939157 - L2 LINE L2 -15 3257 3006 1960 107 7 4 chr6 101476120 101476400 -80938842 + AluSx SINE Alu 1 281 -31 279 0 0 0 chr6 101476404 101476435 -80938807 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 286 216 0 128 chr6 101476510 101476612 -80938630 + Tigger5 DNA MER2_type 2 90 -2233 262 188 0 0 chr6 101476714 101476762 -80938480 - Tigger5 DNA MER2_type -5 2318 2271 501 179 0 0 chr6 101476799 101476883 -80938359 + Tigger5 DNA MER2_type 2237 2320 -3 21 0 0 0 chr6 101478759 101478780 -80936462 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 101481907 101481927 -80933315 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 205 369 63 9 chr6 101484180 101484291 -80930951 - MIR SINE MIR -64 144 28 380 318 123 41 chr6 101484605 101484825 -80930417 + MIR SINE MIR 11 248 -14 2429 78 0 0 chr6 101485696 101486002 -80929240 - AluSg SINE Alu -4 306 1 536 239 85 32 chr6 101487176 101487364 -80927878 - MER63A DNA MER1_type -12 198 1 244 324 129 14 chr6 101488107 101488317 -80926925 + L2 LINE L2 2250 2483 -831 234 0 0 0 chr6 101488324 101488350 -80926892 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 493 98 9 125 chr6 101488360 101488472 -80926770 - FRAM SINE Alu -31 145 47 23 33 0 0 chr6 101488927 101488957 -80926285 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 101494192 101494213 -80921029 + AT_rich Low_complexity Low_complexity 1 21 0 2065 109 0 11 chr6 101494718 101495036 -80920206 + AluSq SINE Alu 1 315 0 24 67 0 0 chr6 101496039 101496084 -80919158 + AT_rich Low_complexity Low_complexity 1 45 0 47 19 0 0 chr6 101498297 101498351 -80916891 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr6 101498425 101498450 -80916792 + AT_rich Low_complexity Low_complexity 1 25 0 202 256 11 11 chr6 101500453 101500543 -80914699 + GA-rich Low_complexity Low_complexity 1 90 0 183 172 0 103 chr6 101500923 101500981 -80914261 - MER5C DNA MER1_type -196 128 77 488 270 13 57 chr6 101502062 101502221 -80913021 - MER69A DNA AcHobo 0 177 26 980 246 44 0 chr6 101506545 101506773 -80908469 + Charlie1 DNA MER1_type 1 238 -2523 459 235 44 0 chr6 101506757 101506893 -80908349 + Charlie1 DNA MER1_type 2620 2761 0 * 267 333 188 11 chr6 101506898 101507084 -80908158 - MIR SINE MIR 0 262 44 352 310 62 0 chr6 101507141 101507270 -80907972 - L2 LINE L2 0 3313 3177 21 57 0 0 chr6 101508080 101508115 -80907127 + AT_rich Low_complexity Low_complexity 1 35 0 206 77 0 103 chr6 101508421 101508460 -80906782 + (CAAAAA)n Simple_repeat Simple_repeat 5 39 0 205 179 0 0 chr6 101508818 101508857 -80906385 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 33 43 0 0 chr6 101509683 101509730 -80905512 + AT_rich Low_complexity Low_complexity 1 47 0 27 0 0 0 chr6 101509939 101509966 -80905276 + AT_rich Low_complexity Low_complexity 1 27 0 198 71 0 0 chr6 101510326 101510354 -80904888 + (CAATA)n Simple_repeat Simple_repeat 3 30 0 21 36 0 0 chr6 101511234 101511262 -80903980 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr6 101511320 101511369 -80903873 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr6 101511524 101511545 -80903697 + AT_rich Low_complexity Low_complexity 1 21 0 2040 205 106 26 chr6 101515536 101516112 -80899130 + MLT1E2 LTR MaLR 5 626 0 245 222 0 0 chr6 101518043 101518088 -80897154 - L2 LINE L2 -8 3305 3261 257 304 63 0 chr6 101518384 101518463 -80896779 - L2 LINE L2 -2 3270 3187 357 289 26 26 chr6 101518762 101518914 -80896328 - L1MC4a LINE L1 -1961 5847 5696 744 269 98 27 chr6 101520054 101520316 -80894926 + MIR SINE MIR 2 262 0 322 310 78 17 chr6 101520338 101520454 -80894788 - MER5B DNA MER1_type -49 129 7 31 82 0 0 chr6 101521414 101521487 -80893755 + AT_rich Low_complexity Low_complexity 1 73 0 21 36 0 0 chr6 101521898 101521926 -80893316 + AT_rich Low_complexity Low_complexity 1 28 0 4327 111 101 86 chr6 101521946 101523290 -80891952 + pTR5 LTR ERV1 743 2438 0 22 0 0 0 chr6 101523796 101523818 -80891424 + AT_rich Low_complexity Low_complexity 1 22 0 207 45 0 68 chr6 101523878 101523922 -80891320 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 3627 64 4 12 chr6 101524002 101524485 -80890757 + L1PA7 LINE L1 5674 6152 -2 895 264 10 0 chr6 101525347 101525555 -80889687 + MER58A DNA MER1_type 15 224 0 230 71 0 24 chr6 101525626 101525668 -80889574 + (CA)n Simple_repeat Simple_repeat 2 42 0 561 337 133 7 chr6 101526600 101527008 -80888234 + L2 LINE L2 1611 2079 -1235 1725 71 4 0 chr6 101527008 101527246 -80887996 - L1PA13 LINE L1 0 6163 5925 561 337 133 7 chr6 101527246 101527273 -80887969 + L2 LINE L2 2079 2101 -1213 2907 219 59 13 chr6 101527299 101528062 -80887180 + L1MB8 LINE L1 5380 6177 -1 302 359 39 39 chr6 101528369 101528525 -80886717 + L2 LINE L2 3117 3272 0 22 35 0 0 chr6 101528795 101528824 -80886418 + AT_rich Low_complexity Low_complexity 1 29 0 1602 103 0 22 chr6 101528902 101529134 -80886108 + AluY SINE Alu 85 311 0 2740 3 0 0 chr6 101530967 101531268 -80883974 + AluYa5 SINE Alu 1 301 -10 250 241 0 17 chr6 101531641 101531699 -80883543 + MIR SINE MIR 57 113 -149 22 35 0 0 chr6 101531724 101531753 -80883489 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 101532649 101532686 -80882556 + AT_rich Low_complexity Low_complexity 1 37 0 224 261 0 11 chr6 101534516 101534604 -80880638 + GA-rich Low_complexity Low_complexity 2 88 0 23 78 0 0 chr6 101534951 101535002 -80880240 + AT_rich Low_complexity Low_complexity 1 51 0 360 308 91 67 chr6 101535149 101535610 -80879632 - L1M4 LINE L1 -1239 4907 4436 2061 216 15 29 chr6 101535644 101535900 -80879342 + L1MA9 LINE L1 5521 5768 -544 344 71 18 0 chr6 101535900 101535956 -80879286 + (TA)n Simple_repeat Simple_repeat 1 57 0 2061 216 15 29 chr6 101535956 101536217 -80879025 + L1MA9 LINE L1 5768 6031 -281 711 237 23 19 chr6 101536341 101536556 -80878686 + L1MA9 LINE L1 6059 6274 -38 21 36 0 0 chr6 101536556 101536584 -80878658 + AT_rich Low_complexity Low_complexity 1 28 0 348 271 81 1 chr6 101536639 101536785 -80878457 - MIR SINE MIR -50 212 57 271 122 0 0 chr6 101538342 101538391 -80876851 - L1 LINE L1 -2852 3294 3246 5662 116 24 9 chr6 101538393 101538523 -80876719 + L1PA14 LINE L1 5256 5383 -778 2539 40 0 0 chr6 101538523 101538861 -80876381 + AluY SINE Alu 1 311 0 5662 116 24 9 chr6 101538861 101539607 -80875635 + L1PA14 LINE L1 5383 6145 -16 225 259 160 61 chr6 101539742 101540005 -80875237 + L1ME4a LINE L1 5817 6105 -16 2091 156 24 0 chr6 101540259 101540599 -80874643 - MER7A DNA MER2_type 0 346 1 840 134 64 37 chr6 101540698 101540885 -80874357 - L1MA4 LINE L1 0 6300 6109 24 53 0 0 chr6 101540986 101541024 -80874218 + AT_rich Low_complexity Low_complexity 1 38 0 1633 314 100 24 chr6 101541184 101542045 -80873197 + L2 LINE L2 33 958 -2356 297 227 0 0 chr6 101542115 101542181 -80873061 - LTR33A LTR ERVL -44 479 414 583 324 188 0 chr6 101542553 101542846 -80872396 + L2 LINE L2 2322 2669 -645 284 237 32 103 chr6 101542864 101543020 -80872222 - L2 LINE L2 -107 3206 3062 21 0 0 0 chr6 101543145 101543166 -80872076 + AT_rich Low_complexity Low_complexity 1 21 0 573 295 163 45 chr6 101544125 101544639 -80870603 + L2 LINE L2 2694 3280 -33 2067 106 7 17 chr6 101548464 101548765 -80866477 - AluSx SINE Alu -14 298 1 2077 116 7 0 chr6 101549901 101550193 -80865049 + AluSg1 SINE Alu 1 294 -15 1564 151 91 0 chr6 101550200 101550485 -80864757 - Tigger1 DNA MER2_type -110 2308 1998 887 185 84 111 chr6 101550486 101550784 -80864458 - AluSx SINE Alu -9 303 14 11571 153 29 9 chr6 101550784 101552756 -80862486 - Tigger1 DNA MER2_type -405 2013 1 2814 3 0 0 chr6 101554389 101554697 -80860545 - AluY SINE Alu -3 308 1 208 297 14 27 chr6 101557681 101557755 -80857487 + MIR SINE MIR 184 256 -6 23 0 0 0 chr6 101558049 101558072 -80857170 + AT_rich Low_complexity Low_complexity 1 23 0 1185 300 62 50 chr6 101558549 101559361 -80855881 - L2 LINE L2 0 3313 2491 336 305 26 40 chr6 101560651 101560802 -80854440 + MER5A DNA MER1_type 1 149 -40 398 256 0 11 chr6 101560903 101560993 -80854249 + LTR16A LTR ERVL 360 448 -2 456 262 40 16 chr6 101561454 101561580 -80853662 + MIR SINE MIR 74 202 -60 24 0 0 0 chr6 101563155 101563179 -80852063 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 101564828 101564853 -80850389 + AT_rich Low_complexity Low_complexity 1 25 0 381 307 87 0 chr6 101565713 101565840 -80849402 + L2 LINE L2 3134 3271 -1 201 350 89 32 chr6 101566230 101566353 -80848889 + L2 LINE L2 3184 3313 0 * 266 273 26 0 chr6 101566347 101566424 -80848818 + L3 LINE CR1 1326 1404 -173 323 336 160 8 chr6 101566434 101566702 -80848540 - L3 LINE CR1 -338 1239 931 2366 283 124 29 chr6 101566705 101567976 -80847266 + L2 LINE L2 1916 3307 -6 25 65 0 0 chr6 101569242 101569288 -80845954 + AT_rich Low_complexity Low_complexity 1 46 0 3490 135 30 22 chr6 101569689 101570324 -80844918 - L1MA5 LINE L1 -5 6295 5656 229 341 23 0 chr6 101570822 101570910 -80844332 + L2 LINE L2 1863 1952 -1362 21 57 0 0 chr6 101571822 101571857 -80843385 + AT_rich Low_complexity Low_complexity 1 35 0 5107 141 21 4 chr6 101572422 101573261 -80841981 - L1PA15 LINE L1 -8 6157 5304 3445 206 72 1 chr6 101573280 101574077 -80841165 + L1PA15 LINE L1 4438 5290 -856 21 0 0 0 chr6 101575048 101575069 -80840173 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 101575191 101575213 -80840029 + AT_rich Low_complexity Low_complexity 1 22 0 2118 106 0 3 chr6 101575954 101576238 -80839004 - AluSc SINE Alu -26 283 1 317 263 10 30 chr6 101577463 101577562 -80837680 + GA-rich Low_complexity Low_complexity 4 100 0 255 236 64 0 chr6 101578393 101578550 -80836692 + (TA)n Simple_repeat Simple_repeat 2 168 0 229 299 96 52 chr6 101579077 101579173 -80836069 - MIR SINE MIR -93 115 18 217 321 0 12 chr6 101579691 101579775 -80835467 + (TA)n Simple_repeat Simple_repeat 1 83 0 1135 181 35 17 chr6 101579941 101580173 -80835069 + MER46A DNA MER2_type 1 236 0 226 0 59 0 chr6 101583644 101583678 -80831564 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 922 216 25 5 chr6 101587112 101587311 -80827931 - MLT1B LTR MaLR -1 389 187 352 157 0 3 chr6 101587321 101587388 -80827854 - MLT1A2 LTR MaLR -303 71 1 21 0 0 0 chr6 101587876 101587897 -80827345 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 101587978 101588009 -80827233 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr6 101588683 101588705 -80826537 + AT_rich Low_complexity Low_complexity 1 22 0 1129 297 74 10 chr6 101590551 101590969 -80824273 + LTR16A LTR ERVL 1 445 -5 202 238 0 0 chr6 101591294 101591336 -80823906 + MIR SINE MIR 208 249 -13 206 339 0 0 chr6 101591467 101591523 -80823719 - MIR SINE MIR -129 133 78 209 329 82 0 chr6 101591620 101591705 -80823537 - L2 LINE L2 -8 3264 3173 2525 103 0 3 chr6 101592270 101592639 -80822603 + L1PA13 LINE L1 5791 6158 -5 24 53 0 0 chr6 101592866 101592904 -80822338 + AT_rich Low_complexity Low_complexity 1 38 0 232 357 62 21 chr6 101593220 101593383 -80821859 - MIR SINE MIR -65 197 18 369 177 50 71 chr6 101594027 101594168 -80821074 - L1MB7 LINE L1 -16 6168 6031 2049 116 10 3 chr6 101595729 101596021 -80819221 - AluSg SINE Alu -16 294 1 206 211 35 18 chr6 101596585 101596642 -80818600 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 2221 102 0 20 chr6 101597174 101597479 -80817763 - AluSq SINE Alu -14 299 1 37 39 0 0 chr6 101597626 101597677 -80817565 + AT_rich Low_complexity Low_complexity 1 51 0 39 80 0 0 chr6 101598816 101598904 -80816338 + AT_rich Low_complexity Low_complexity 1 88 0 504 72 52 0 chr6 101599365 101599462 -80815780 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 209 310 62 47 chr6 101600276 101600405 -80814837 - MIR SINE MIR -61 147 17 27 62 0 0 chr6 101601500 101601548 -80813694 + AT_rich Low_complexity Low_complexity 1 48 0 33 0 0 0 chr6 101601934 101601967 -80813275 + AT_rich Low_complexity Low_complexity 1 33 0 191 333 180 9 chr6 101602608 101602719 -80812523 + MER5B DNA MER1_type 4 133 -45 3678 191 63 20 chr6 101602870 101603756 -80811486 + L1MB8 LINE L1 5289 6178 0 2245 92 0 35 chr6 101603764 101604079 -80811163 + AluSq SINE Alu 1 304 -9 227 111 0 0 chr6 101604235 101604271 -80810971 + L1MA3 LINE L1 6270 6305 0 218 355 74 10 chr6 101605752 101605876 -80809366 + MIR SINE MIR 3 135 -73 563 267 47 31 chr6 101607171 101607362 -80807880 + MIR SINE MIR 64 257 -5 21 57 0 0 chr6 101607713 101607748 -80807494 + AT_rich Low_complexity Low_complexity 1 35 0 210 71 0 0 chr6 101608668 101608696 -80806546 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 315 0 0 0 chr6 101608704 101608739 -80806503 + (CA)n Simple_repeat Simple_repeat 1 35 0 453 356 49 34 chr6 101609054 101609321 -80805921 + L2 LINE L2 3002 3272 0 2278 65 0 59 chr6 101610385 101610708 -80804534 + AluY SINE Alu 1 304 -7 1260 209 72 33 chr6 101610711 101611042 -80804200 - MER2 DNA MER2_type 0 344 1 31 0 0 0 chr6 101612717 101612748 -80802494 + AT_rich Low_complexity Low_complexity 1 31 0 534 308 108 17 chr6 101614168 101614408 -80800834 + MIR SINE MIR 1 262 0 1158 193 21 30 chr6 101614855 101615088 -80800154 + AluJb SINE Alu 1 231 -81 1553 197 17 7 chr6 101615665 101615960 -80799282 - AluJo SINE Alu -12 300 3 910 231 52 19 chr6 101616599 101616811 -80798431 + MER20 DNA MER1_type 1 219 0 370 327 45 0 chr6 101617384 101617494 -80797748 - L2 LINE L2 -4 3268 3154 322 288 44 56 chr6 101618168 101618328 -80796914 - MIR SINE MIR -79 183 26 244 193 158 0 chr6 101619146 101619203 -80796039 + MER94 DNA DNA 5 70 -64 183 129 0 0 chr6 101621235 101621266 -80793976 + (T)n Simple_repeat Simple_repeat 1 31 0 1626 158 11 78 chr6 101621682 101622042 -80793200 - MER1B DNA MER1_type -1 336 1 243 152 0 0 chr6 101622708 101622754 -80792488 + LTR66 LTR ERVL 394 439 -171 288 0 0 0 chr6 101622785 101622817 -80792425 + (TG)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr6 101622843 101622864 -80792378 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 211 54 27 chr6 101622906 101623023 -80792219 - MIR SINE MIR -62 146 37 186 162 27 0 chr6 101623183 101623220 -80792022 - L2 LINE L2 -216 3056 3019 1313 219 49 0 chr6 101623221 101623509 -80791733 - AluJo SINE Alu -10 302 1 23 0 0 0 chr6 101625183 101625206 -80790036 + AT_rich Low_complexity Low_complexity 1 23 0 245 73 0 24 chr6 101625232 101625273 -80789969 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 1620 158 122 15 chr6 101625273 101625609 -80789633 - THE1C LTR MaLR -3 372 1 6834 190 131 3 chr6 101625609 101627068 -80788174 - THE1C-int LTR MaLR 0 1651 6 1859 176 42 6 chr6 101627073 101627431 -80787811 - THE1C LTR MaLR 0 375 5 659 12 0 12 chr6 101627433 101627514 -80787728 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 358 274 52 7 chr6 101627672 101627825 -80787417 - L1ME4a LINE L1 -225 5896 5737 341 331 38 72 chr6 101628344 101628637 -80786605 - L2 LINE L2 -528 2786 2504 310 273 0 0 chr6 101628695 101628772 -80786470 - MIR SINE MIR 0 262 186 437 306 102 21 chr6 101628778 101628964 -80786278 - MIR SINE MIR -11 251 51 794 263 124 65 chr6 101629347 101630241 -80785001 + L1MC4 LINE L1 7094 8040 -2 21 0 0 0 chr6 101632480 101632501 -80782741 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 101634408 101634430 -80780812 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr6 101635097 101635135 -80780107 + (CA)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr6 101638962 101638984 -80776258 + AT_rich Low_complexity Low_complexity 1 22 0 325 306 10 0 chr6 101639192 101639290 -80775952 + (TG)n Simple_repeat Simple_repeat 2 100 0 1398 219 7 23 chr6 101640052 101640354 -80774888 - AluJo SINE Alu -10 302 6 242 219 49 37 chr6 101641503 101641585 -80773657 - L1ME4a LINE L1 -517 5604 5522 22 0 0 0 chr6 101642270 101642292 -80772950 + AT_rich Low_complexity Low_complexity 1 22 0 965 146 5 60 chr6 101643014 101643199 -80772043 + FAM SINE Alu 1 175 0 281 263 132 44 chr6 101643943 101644057 -80771185 + MIR SINE MIR 8 131 -131 290 185 12 0 chr6 101644078 101644159 -80771083 + (TA)n Simple_repeat Simple_repeat 1 82 0 204 40 0 0 chr6 101644170 101644195 -80771047 + (GA)n Simple_repeat Simple_repeat 2 26 0 189 304 18 0 chr6 101644287 101644343 -80770899 + MIR SINE MIR 180 236 -26 243 229 138 18 chr6 101644620 101644729 -80770513 - L1ME4a LINE L1 -81 6040 5919 631 310 93 9 chr6 101645050 101645276 -80769966 - MIR SINE MIR -2 260 16 354 214 0 0 chr6 101645289 101645373 -80769869 + (TA)n Simple_repeat Simple_repeat 1 84 0 25 0 0 0 chr6 101645556 101645581 -80769661 + AT_rich Low_complexity Low_complexity 1 25 0 227 114 29 0 chr6 101645913 101645948 -80769294 + MER94 DNA DNA 99 134 0 350 230 0 53 chr6 101646085 101646198 -80769044 + MIR SINE MIR 99 205 -57 25 51 0 0 chr6 101647160 101647199 -80768043 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr6 101647247 101647270 -80767972 + AT_rich Low_complexity Low_complexity 1 23 0 1181 201 25 40 chr6 101648313 101648636 -80766606 - MER33 DNA MER1_type -6 318 1 31 0 0 0 chr6 101648644 101648675 -80766567 + AT_rich Low_complexity Low_complexity 1 31 0 469 318 109 27 chr6 101648809 101649029 -80766213 + MIR SINE MIR 24 261 -1 32 0 0 0 chr6 101652447 101652479 -80762763 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr6 101655733 101655771 -80759471 + AT_rich Low_complexity Low_complexity 1 38 0 21 71 0 0 chr6 101656382 101656424 -80758818 + GC_rich Low_complexity Low_complexity 1 42 0 28 79 0 0 chr6 101658632 101658695 -80756547 + GC_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr6 101662882 101662912 -80752330 + AT_rich Low_complexity Low_complexity 1 30 0 234 208 57 0 chr6 101663386 101663439 -80751803 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 1254 217 74 107 chr6 101667543 101668122 -80747120 - MLT1F1 LTR MaLR 0 567 8 486 287 85 26 chr6 101668552 101668967 -80746275 - L1ME3A LINE L1 -3 6161 5710 1285 219 58 26 chr6 101668998 101669340 -80745902 + MLT1A1 LTR MaLR 1 353 -12 1470 256 55 10 chr6 101669426 101669933 -80745309 - L1ME3A LINE L1 -762 5384 4855 1460 229 28 33 chr6 101670138 101670214 -80745028 + MSTD LTR MaLR 1 76 -320 2206 122 0 0 chr6 101670214 101670517 -80744725 + AluSq SINE Alu 1 303 -10 1460 229 28 33 chr6 101670517 101670838 -80744404 + MSTD LTR MaLR 76 396 0 616 314 227 3 chr6 101670964 101671475 -80743767 + L2 LINE L2 2683 3313 0 399 326 39 55 chr6 101672089 101672270 -80742972 - MER5B DNA MER1_type 0 178 1 736 160 47 0 chr6 101672278 101672428 -80742814 - Charlie5 DNA MER1_type 0 2624 2468 349 169 0 0 chr6 101672431 101672490 -80742752 - Charlie5 DNA MER1_type -2548 64 6 2227 159 56 20 chr6 101672490 101672899 -80742343 + MSTC LTR MaLR 1 424 -4 2305 208 39 30 chr6 101672916 101673478 -80741764 - L1MD2 LINE L1 -247 6112 5546 1364 170 11 17 chr6 101673476 101673783 -80741459 + L1MD2 LINE L1 5255 5529 -713 * 599 216 36 103 chr6 101673782 101674111 -80741131 - L1MD2 LINE L1 -931 5215 4909 * 247 317 12 0 chr6 101674303 101674385 -80740857 + CT-rich Low_complexity Low_complexity 2 84 0 313 341 100 31 chr6 101674388 101674649 -80740593 - L2 LINE L2 -38 3275 2997 8319 92 11 0 chr6 101674649 101676575 -80738667 + L1PA7 LINE L1 4216 6150 -4 27 73 0 0 chr6 101676627 101676682 -80738560 + AT_rich Low_complexity Low_complexity 1 55 0 183 156 0 0 chr6 101677002 101677034 -80738208 + (TG)n Simple_repeat Simple_repeat 1 32 0 335 147 0 13 chr6 101677035 101677110 -80738132 + (TA)n Simple_repeat Simple_repeat 2 75 0 331 325 80 35 chr6 101677939 101678139 -80737103 + MIR SINE MIR 54 262 0 24 0 0 0 chr6 101678174 101678198 -80737044 + AT_rich Low_complexity Low_complexity 1 24 0 237 305 85 0 chr6 101679278 101679360 -80735882 + L2 LINE L2 410 498 -2816 311 0 26 0 chr6 101679370 101679409 -80735833 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr6 101679591 101679614 -80735628 + AT_rich Low_complexity Low_complexity 1 23 0 262 279 81 56 chr6 101680093 101680290 -80734952 - L1MD2 LINE L1 -1998 4148 3947 336 155 14 28 chr6 101680309 101680380 -80734862 + MLT1A1 LTR MaLR 295 364 -1 5636 229 55 89 chr6 101680499 101684548 -80730694 - L1MB5 LINE L1 -11 6163 2259 190 282 244 0 chr6 101684657 101684735 -80730507 - MIR SINE MIR -27 235 139 571 251 113 35 chr6 101685448 101685651 -80729591 + MIR SINE MIR 35 253 -9 282 29 0 0 chr6 101685695 101685730 -80729512 + (GA)n Simple_repeat Simple_repeat 2 36 0 1712 155 65 39 chr6 101685770 101686125 -80729117 - THE1B LTR MaLR 0 364 1 42 20 0 0 chr6 101689968 101690017 -80725225 + AT_rich Low_complexity Low_complexity 1 49 0 986 311 59 22 chr6 101690926 101691386 -80723856 + LTR33 LTR ERVL 45 521 0 192 278 100 0 chr6 101692001 101692091 -80723151 + L2 LINE L2 1990 2088 -1226 237 308 11 22 chr6 101692133 101692224 -80723018 + CT-rich Low_complexity Low_complexity 1 90 0 668 124 0 0 chr6 101692590 101692695 -80722547 - L1MA3 LINE L1 0 6305 6201 180 0 0 0 chr6 101693364 101693384 -80721858 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 240 340 292 12 chr6 101693535 101693867 -80721375 + L2 LINE L2 2805 3229 -43 327 275 106 57 chr6 101694139 101694536 -80720706 + LTR33 LTR ERVL 5 521 0 35 83 0 0 chr6 101694967 101695051 -80720191 + AT_rich Low_complexity Low_complexity 1 84 0 1597 157 82 0 chr6 101695099 101695379 -80719863 - AluSx SINE Alu -9 303 1 2371 91 3 0 chr6 101697785 101698092 -80717150 + AluY SINE Alu 1 308 -3 444 77 0 0 chr6 101698214 101698279 -80716963 + (TG)n Simple_repeat Simple_repeat 2 66 0 342 250 60 0 chr6 101698437 101698521 -80716721 + L2 LINE L2 3221 3309 -4 670 181 43 7 chr6 101698682 101698820 -80716422 + MIR3 SINE MIR 57 199 -9 1969 244 32 56 chr6 101699572 101700322 -80714920 - L1ME1 LINE L1 -5 6161 5430 600 237 18 6 chr6 101700324 101700493 -80714749 + L1M LINE L1 5254 5424 -738 24 53 0 0 chr6 101700806 101700844 -80714398 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr6 101701398 101701428 -80713814 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 101701638 101701659 -80713583 + AT_rich Low_complexity Low_complexity 1 21 0 385 96 14 27 chr6 101701753 101701826 -80713416 + (TATG)n Simple_repeat Simple_repeat 2 73 0 1817 176 20 15 chr6 101701835 101702176 -80713066 - MER2 DNA MER2_type 0 344 2 231 268 78 54 chr6 101702206 101702411 -80712831 - L1ME1 LINE L1 -1813 4333 4124 27 0 0 0 chr6 101702520 101702547 -80712695 + AT_rich Low_complexity Low_complexity 1 27 0 194 188 60 51 chr6 101702824 101702910 -80712332 + MIR SINE MIR 30 116 -92 2735 85 6 3 chr6 101703067 101703430 -80711812 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr6 101703504 101703526 -80711716 + AT_rich Low_complexity Low_complexity 1 22 0 228 371 23 0 chr6 101703585 101703717 -80711525 + MIR SINE MIR 57 191 -71 322 332 54 27 chr6 101703762 101703985 -80711257 - LTR33 LTR ERVL 0 521 293 240 291 13 119 chr6 101704935 101705086 -80710156 + MIR SINE MIR 71 205 -57 2360 71 0 3 chr6 101705627 101705923 -80709319 + AluY SINE Alu 3 297 -14 357 320 28 44 chr6 101705935 101706116 -80709126 - L2 LINE L2 -167 3146 2969 915 321 36 47 chr6 101706331 101706888 -80708354 - L2 LINE L2 -552 2762 2212 21 36 0 0 chr6 101707304 101707332 -80707910 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 101707576 101707597 -80707645 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr6 101708638 101708661 -80706581 + AT_rich Low_complexity Low_complexity 1 23 0 797 203 44 16 chr6 101709131 101709313 -80705929 + MER5A DNA MER1_type 3 189 0 424 320 5 73 chr6 101710069 101710275 -80704967 + MIR SINE MIR 68 259 -3 1688 157 117 3 chr6 101710282 101710606 -80704636 - MER46B DNA MER2_type 0 236 1 23 54 0 0 chr6 101710739 101710776 -80704466 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr6 101711263 101711295 -80703947 + AT_rich Low_complexity Low_complexity 1 32 0 501 254 65 0 chr6 101712734 101712872 -80702370 - MIR SINE MIR 0 262 116 2255 66 0 3 chr6 101713387 101713725 -80701517 + AluY SINE Alu 1 337 0 211 386 68 8 chr6 101714630 101714866 -80700376 - L2 LINE L2 -215 3057 2808 418 312 32 0 chr6 101714872 101714997 -80700245 + MER94 DNA DNA 6 134 0 227 191 0 0 chr6 101715305 101715347 -80699895 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2982 98 9 0 chr6 101715564 101715994 -80699248 + L1PA13 LINE L1 5730 6163 0 258 122 82 0 chr6 101716187 101716236 -80699006 + L1MC4 LINE L1 6651 6703 -1339 204 200 40 0 chr6 101717208 101717258 -80697984 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 27 62 0 0 chr6 101717405 101717453 -80697789 + AT_rich Low_complexity Low_complexity 1 48 0 244 370 116 0 chr6 101717648 101717786 -80697456 + MIR3 SINE MIR 54 207 -1 280 229 0 14 chr6 101719205 101719275 -80695967 - MER45 DNA AcHobo 0 1581 1513 21923 90 18 3 chr6 101719609 101723532 -80691710 + L1PA7 LINE L1 2176 6152 -2 862 304 41 22 chr6 101724539 101725002 -80690240 + HAL1b LINE L1 150 621 -727 280 218 18 18 chr6 101725786 101725896 -80689346 + L1MC4a LINE L1 5177 5286 -860 2744 215 23 23 chr6 101725909 101726052 -80689190 + L1MA7 LINE L1 5636 5778 -513 2500 38 3 19 chr6 101726052 101726368 -80688874 + AluY SINE Alu 1 311 0 2744 215 23 23 chr6 101726368 101726880 -80688362 + L1MA7 LINE L1 5777 6291 0 750 241 79 8 chr6 101726892 101727145 -80688097 + L1MC4a LINE L1 5285 5555 -2253 954 253 111 87 chr6 101727145 101727603 -80687639 - MLT1D LTR MaLR -36 469 1 1743 215 36 95 chr6 101727606 101728290 -80686952 + L1MC4a LINE L1 5622 6265 -1543 769 242 67 0 chr6 101728283 101728477 -80686765 - L1MC4 LINE L1 -1195 6847 6641 * 571 312 60 14 chr6 101728840 101729055 -80686187 + MIR SINE MIR 33 257 -5 332 322 126 9 chr6 101730632 101730825 -80684417 + MIR SINE MIR 6 216 -46 1400 166 88 25 chr6 101731414 101731697 -80683545 - AluJo SINE Alu 0 312 12 1743 188 9 14 chr6 101731724 101732069 -80683173 + MER2 DNA MER2_type 1 343 -1 570 270 44 25 chr6 101732922 101733081 -80682161 - MLT1F1 LTR MaLR -286 281 120 723 239 61 49 chr6 101733089 101733352 -80681890 + L2 LINE L2 3024 3289 -24 267 347 51 11 chr6 101734393 101734569 -80680673 + L2 LINE L2 3117 3299 -14 36 53 0 0 chr6 101734800 101734857 -80680385 + AT_rich Low_complexity Low_complexity 1 57 0 29 28 0 0 chr6 101735785 101735821 -80679421 + AT_rich Low_complexity Low_complexity 1 36 0 216 266 46 64 chr6 101735862 101735971 -80679271 - MIR SINE MIR -34 228 122 366 292 84 48 chr6 101737700 101738024 -80677218 - L3 LINE CR1 -1 1576 1199 467 235 6 34 chr6 101738377 101738508 -80676734 + MLT1E LTR MaLR 55 186 -381 730 219 38 6 chr6 101738543 101738703 -80676539 + MLT1E LTR MaLR 429 593 0 29 70 0 0 chr6 101739374 101739431 -80675811 + AT_rich Low_complexity Low_complexity 1 57 0 489 282 58 37 chr6 101740369 101740610 -80674632 + L1ME3A LINE L1 4507 4752 -1394 * 1226 178 82 15 chr6 101740600 101740755 -80674487 - L1MA10 LINE L1 -5 6329 6147 198 71 0 0 chr6 101740755 101740783 -80674459 + (TG)n Simple_repeat Simple_repeat 1 28 0 1226 178 82 15 chr6 101740783 101740896 -80674346 - L1MA10 LINE L1 -187 6147 6043 438 304 39 19 chr6 101740895 101741102 -80674140 + L1ME3A LINE L1 4750 4960 -1186 * 240 318 56 18 chr6 101741105 101741391 -80673851 + L1ME3A LINE L1 4996 5292 -854 794 280 64 14 chr6 101741433 101741779 -80673463 + L1ME3A LINE L1 5386 5748 -422 577 277 46 75 chr6 101741781 101741979 -80673263 + L1ME3A LINE L1 5851 6038 -132 855 289 113 38 chr6 101741979 101742481 -80672761 - MLT1F LTR MaLR -2 540 1 577 277 46 75 chr6 101742481 101742589 -80672653 + L1ME3A LINE L1 6038 6148 -22 1337 222 0 32 chr6 101742634 101742945 -80672297 - AluJo SINE Alu -11 301 1 324 195 52 39 chr6 101744000 101744077 -80671165 + LTR50 LTR ERVL 2 79 -716 249 232 12 37 chr6 101744160 101744242 -80671000 + LTR50 LTR ERVL 210 289 -506 276 261 188 0 chr6 101744363 101744501 -80670741 + LTR50 LTR ERVL 632 795 0 575 274 0 50 chr6 101747472 101747651 -80667591 - MLT1I LTR MaLR 0 409 240 1134 102 77 41 chr6 101747655 101747851 -80667391 + MER84 LTR ERVI 71 273 -234 270 0 0 0 chr6 101748021 101748051 -80667191 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 592 261 12 0 chr6 101750655 101750816 -80664426 + FRAM SINE Alu 1 163 -13 35 41 0 0 chr6 101751179 101751228 -80664014 + AT_rich Low_complexity Low_complexity 1 49 0 864 152 0 0 chr6 101751619 101751751 -80663491 + FLAM_A SINE Alu 1 132 -1 445 56 0 0 chr6 101753015 101753069 -80662173 + AluY SINE Alu 61 114 -197 657 177 0 57 chr6 101754225 101754366 -80660876 + FLAM_A SINE Alu 1 133 0 520 154 77 10 chr6 101754570 101754674 -80660568 + THE1C LTR MaLR 3 113 -262 851 114 6 89 chr6 101754774 101754808 -80660434 + MER84 LTR ERVI 363 398 -109 5940 99 14 24 chr6 101754808 101755493 -80659749 - L1PA12 LINE L1 -1 6167 5477 207 88 0 0 chr6 101755493 101755527 -80659715 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2158 82 0 0 chr6 101755527 101755808 -80659434 - AluY SINE Alu -30 281 1 5940 99 14 24 chr6 101755808 101756100 -80659142 - L1PA12 LINE L1 -689 5479 5197 851 114 6 89 chr6 101756100 101756223 -80659019 + MER84 LTR ERVI 398 507 0 292 333 129 0 chr6 101756579 101756726 -80658516 + MIR SINE MIR 1 166 -96 4312 154 78 53 chr6 101756767 101757881 -80657361 - L1MA7 LINE L1 0 6291 5154 627 185 0 60 chr6 101757884 101758035 -80657207 + L1MA7 LINE L1 5016 5157 -989 24 0 0 0 chr6 101759045 101759069 -80656173 + AT_rich Low_complexity Low_complexity 1 24 0 239 340 39 30 chr6 101759560 101759763 -80655479 + L1M4 LINE L1 2417 2621 -3525 260 147 27 27 chr6 101760037 101760123 -80655119 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 30 45 0 0 chr6 101760292 101760336 -80654906 + AT_rich Low_complexity Low_complexity 1 44 0 2034 287 115 54 chr6 101760623 101761555 -80653687 + L2 LINE L2 894 1902 -1412 1635 185 3 20 chr6 101761555 101761847 -80653395 + AluJo SINE Alu 5 291 -21 2034 287 115 54 chr6 101761847 101761992 -80653250 + L2 LINE L2 1902 2037 -1277 1024 248 62 73 chr6 101761994 101762110 -80653132 + MLT1C LTR MaLR 6 122 -345 1706 149 61 25 chr6 101762110 101762472 -80652770 + THE1C LTR MaLR 1 375 0 1024 248 62 73 chr6 101762472 101762822 -80652420 + MLT1C LTR MaLR 122 467 0 395 297 31 0 chr6 101762826 101762954 -80652288 + L2 LINE L2 2036 2167 -1147 373 348 7 0 chr6 101763158 101763296 -80651946 - L2 LINE L2 -564 2750 2612 222 174 0 0 chr6 101763311 101763357 -80651885 + (CA)n Simple_repeat Simple_repeat 2 47 0 1894 154 34 9 chr6 101763658 101764008 -80651234 - L1M2 LINE L1 -547 5750 5392 879 158 6 0 chr6 101764008 101764165 -80651077 + L1MA5A LINE L1 6129 6287 -10 30 27 0 0 chr6 101764256 101764293 -80650949 + AT_rich Low_complexity Low_complexity 1 37 0 339 327 0 54 chr6 101764541 101764746 -80650496 - L1MC4a LINE L1 -1871 5937 5744 1941 205 0 8 chr6 101764959 101765325 -80649917 - MLT1A1 LTR MaLR -2 363 1 2428 77 0 10 chr6 101765389 101765701 -80649541 - AluSq SINE Alu -4 309 1 532 345 104 27 chr6 101766067 101766510 -80648732 - L1ME2 LINE L1 -304 5860 5384 313 207 0 24 chr6 101766518 101766600 -80648642 + MER116 DNA Mariner 1 80 0 492 226 260 0 chr6 101766839 101766985 -80648257 - MIR SINE MIR -15 247 64 25 31 0 0 chr6 101767173 101767205 -80648037 + AT_rich Low_complexity Low_complexity 1 32 0 228 320 31 31 chr6 101768088 101768216 -80647026 + HAL1b LINE L1 373 500 -848 270 0 0 0 chr6 101768379 101768409 -80646833 + (TG)n Simple_repeat Simple_repeat 2 31 0 477 211 57 32 chr6 101768438 101768562 -80646680 + L1MC4 LINE L1 6721 6846 -1115 2157 133 0 0 chr6 101768562 101768870 -80646372 + AluSx SINE Alu 1 308 -4 24 53 0 0 chr6 101769393 101769431 -80645811 + AT_rich Low_complexity Low_complexity 1 38 0 23 92 0 0 chr6 101769547 101769612 -80645630 + AT_rich Low_complexity Low_complexity 1 65 0 209 95 63 32 chr6 101770486 101770549 -80644693 + GA-rich Low_complexity Low_complexity 4 68 0 495 0 0 0 chr6 101770942 101770997 -80644245 + (CA)n Simple_repeat Simple_repeat 2 56 0 250 233 121 17 chr6 101772029 101772145 -80643097 - L1ME4a LINE L1 -92 6029 5902 29 60 0 0 chr6 101772578 101772628 -80642614 + AT_rich Low_complexity Low_complexity 1 50 0 254 274 128 0 chr6 101772784 101772886 -80642356 + MIR SINE MIR 83 197 -65 1993 194 19 12 chr6 101772977 101773405 -80641837 + MER95 LTR ERV 1 431 0 226 182 0 36 chr6 101773528 101773583 -80641659 + CT-rich Low_complexity Low_complexity 4 56 0 321 331 41 8 chr6 101774196 101774317 -80640925 + MIR3 SINE MIR 1 125 -83 * 384 293 29 29 chr6 101774301 101774441 -80640801 + MIR SINE MIR 73 212 -50 375 269 41 58 chr6 101774703 101774890 -80640352 - MIR SINE MIR -62 146 7 21 36 0 0 chr6 101777781 101777809 -80637433 + AT_rich Low_complexity Low_complexity 1 28 0 261 267 67 59 chr6 101778092 101778227 -80637015 - MIR SINE MIR -57 205 70 2523 67 0 15 chr6 101780428 101780769 -80634473 - L1PA8 LINE L1 0 6172 5837 3616 114 45 2 chr6 101780769 101781328 -80633914 + L1P LINE L1 4423 5005 -1141 230 229 24 72 chr6 101781549 101781632 -80633610 + MER103 DNA DNA 7 85 -81 5075 103 11 3 chr6 101781659 101782405 -80632837 - L1PA8 LINE L1 -5 6167 5416 2299 107 17 6 chr6 101782405 101782746 -80632496 - L1PA13 LINE L1 0 6163 5815 27 62 0 0 chr6 101783429 101783477 -80631765 + AT_rich Low_complexity Low_complexity 1 48 0 42 36 0 0 chr6 101784903 101784959 -80630283 + AT_rich Low_complexity Low_complexity 1 56 0 267 292 117 13 chr6 101785123 101785277 -80629965 - HAL1 LINE L1 -746 1761 1592 5011 178 7 6 chr6 101785494 101786435 -80628807 + L1PA10 LINE L1 1494 2435 -3711 10093 147 10 3 chr6 101786435 101788907 -80626335 + L1PA10 LINE L1 3681 6157 -11 25 75 0 0 chr6 101789744 101789797 -80625445 + AT_rich Low_complexity Low_complexity 1 53 0 467 295 158 53 chr6 101791159 101791481 -80623761 - L2 LINE L2 -7 3306 2951 8177 51 5 1 chr6 101792032 101793851 -80621391 - L1PA5 LINE L1 -2 6152 4328 13205 39 1 0 chr6 101793851 101795474 -80619768 + L1PA5 LINE L1 2721 4344 -1802 310 264 25 80 chr6 101795936 101796099 -80619143 - L2 LINE L2 0 3313 3160 202 211 88 18 chr6 101798622 101798679 -80616563 - MIR SINE MIR -76 186 126 365 176 190 56 chr6 101799011 101799153 -80616089 + MLT1H LTR MaLR 378 538 -11 765 259 111 71 chr6 101800089 101800613 -80614629 + MLT1H LTR MaLR 1 545 -4 24 91 0 0 chr6 101800882 101800948 -80614294 + AT_rich Low_complexity Low_complexity 1 66 0 711 112 0 0 chr6 101803318 101803425 -80611817 + (TA)n Simple_repeat Simple_repeat 1 107 0 754 257 56 16 chr6 101803598 101803847 -80611395 + MIR SINE MIR 2 260 -2 202 374 66 36 chr6 101804555 101804721 -80610521 - MIR3 SINE MIR -14 194 24 261 135 0 0 chr6 101805191 101805243 -80609999 + (TA)n Simple_repeat Simple_repeat 2 53 0 268 217 22 11 chr6 101805270 101805362 -80609880 + (TA)n Simple_repeat Simple_repeat 1 93 0 190 138 35 0 chr6 101805381 101805439 -80609803 + (TA)n Simple_repeat Simple_repeat 1 60 0 255 175 32 0 chr6 101805489 101805552 -80609690 + (TG)n Simple_repeat Simple_repeat 2 66 0 2513 82 3 3 chr6 101805864 101806206 -80609036 - L1PA13 LINE L1 -4 6159 5818 2389 134 8 5 chr6 101807674 101808048 -80607194 + THE1C LTR MaLR 1 375 0 271 221 132 0 chr6 101808064 101808132 -80607110 + Tigger4(Zombi) DNA MER2_type 1 77 -2654 * 861 203 80 28 chr6 101808129 101808380 -80606862 + Tigger4(Zombi) DNA MER2_type 2468 2731 0 229 307 153 75 chr6 101808526 101808982 -80606260 + MLT1K LTR MaLR 97 588 0 535 231 20 61 chr6 101809216 101809424 -80605818 + MLT1F1 LTR MaLR 10 209 -358 843 210 78 9 chr6 101809453 101809672 -80605570 + MLT1F1 LTR MaLR 334 567 0 209 139 23 23 chr6 101810846 101810889 -80604353 + GA-rich Low_complexity Low_complexity 2 44 0 432 211 246 14 chr6 101811211 101811353 -80603889 - MER5A DNA MER1_type -3 186 12 933 189 5 43 chr6 101811532 101811637 -80603605 + MER45A DNA AcHobo 1 98 -1483 5383 54 10 1 chr6 101811637 101812339 -80602903 - L1PA7 LINE L1 -2 6152 5445 933 189 5 43 chr6 101812339 101812418 -80602824 + MER45A DNA AcHobo 98 178 0 2470 52 0 7 chr6 101812458 101812767 -80602475 + AluY SINE Alu 1 307 -4 770 223 12 30 chr6 101815655 101815982 -80599260 + L1MB8 LINE L1 5880 6167 -11 324 0 0 0 chr6 101817052 101817088 -80598154 + (CAA)n Simple_repeat Simple_repeat 1 36 0 190 276 172 0 chr6 101817784 101817842 -80597400 + L2 LINE L2 3179 3246 -67 211 347 14 14 chr6 101818162 101818234 -80597008 + L2 LINE L2 3201 3272 0 22 35 0 0 chr6 101819917 101819946 -80595296 + AT_rich Low_complexity Low_complexity 1 29 0 345 328 18 29 chr6 101822879 101823050 -80592192 + MIR SINE MIR 38 206 -56 25 0 0 0 chr6 101823293 101823318 -80591924 + AT_rich Low_complexity Low_complexity 1 25 0 1282 187 24 114 chr6 101823402 101823857 -80591385 + MLT2D LTR ERVL 1 414 0 570 356 107 28 chr6 101824030 101824684 -80590558 - L2 LINE L2 -474 2840 2135 4208 149 22 14 chr6 101825242 101825612 -80589630 - L1PB3 LINE L1 0 6154 5789 185 0 40 0 chr6 101825612 101825637 -80589605 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 321 68 0 0 chr6 101825636 101825680 -80589562 + (CA)n Simple_repeat Simple_repeat 2 45 0 4208 149 22 14 chr6 101825637 101826034 -80589208 - L1PB3 LINE L1 -365 5789 5424 375 316 0 0 chr6 101826192 101826290 -80588952 + MER58 DNA MER1_type 1 98 -117 223 216 20 0 chr6 101826309 101826360 -80588882 + GA-rich Low_complexity Low_complexity 1 52 0 239 170 21 0 chr6 101827173 101827220 -80588022 + (CA)n Simple_repeat Simple_repeat 1 48 0 903 127 0 0 chr6 101828403 101828537 -80586705 - AluSg/x SINE Alu -2 307 174 24 0 0 0 chr6 101829405 101829429 -80585813 + AT_rich Low_complexity Low_complexity 1 24 0 2145 108 7 0 chr6 101829679 101829985 -80585257 + AluSg SINE Alu 1 308 -2 449 349 23 6 chr6 101830261 101830436 -80584806 - MIR SINE MIR -7 255 78 938 256 18 75 chr6 101830889 101831276 -80583966 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr6 101833224 101833252 -80581990 + AT_rich Low_complexity Low_complexity 1 28 0 7394 138 5 0 chr6 101883723 101884820 -80530422 + HERVL LTR ERVL 1459 2560 -3094 890 306 80 42 chr6 101885009 101885434 -80529808 + L2 LINE L2 2866 3306 -7 307 286 0 0 chr6 101885497 101885574 -80529668 - L1MC4 LINE L1 -1351 6691 6615 2690 80 10 0 chr6 101886723 101887109 -80528133 - L1P LINE L1 -771 5375 4986 450 123 0 0 chr6 101887108 101887173 -80528069 + L1P LINE L1 3695 3759 -2387 * 21 0 0 0 chr6 101887292 101887313 -80527929 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr6 101887662 101887697 -80527545 + AT_rich Low_complexity Low_complexity 1 35 0 202 282 26 13 chr6 101888175 101888253 -80526989 + MIR SINE MIR 182 260 -2 383 274 0 0 chr6 101889188 101889283 -80525959 + MIR SINE MIR 68 162 -100 925 73 0 8 chr6 101889283 101889407 -80525835 - L1PA7 LINE L1 -432 5722 5600 2909 78 2 17 chr6 101889407 101889819 -80525423 + L1PA7 LINE L1 5734 6140 -14 2537 36 0 7 chr6 101889819 101890123 -80525119 - AluY SINE Alu -9 302 1 210 171 0 0 chr6 101890274 101890315 -80524927 + (CAT)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr6 101890409 101890431 -80524811 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 101890529 101890561 -80524681 + AT_rich Low_complexity Low_complexity 1 32 0 524 179 30 12 chr6 101890723 101890837 -80524405 - LTR48 LTR ERV1 -592 115 1 578 209 11 2 chr6 101890938 101891114 -80524128 - LTR48-int LTR ERV1 -162 6169 5958 397 165 0 13 chr6 101891254 101891333 -80523909 + THE1C-int LTR MaLR 1503 1580 0 2470 123 8 24 chr6 101891333 101891714 -80523528 + THE1C LTR MaLR 1 375 0 323 372 85 24 chr6 101891825 101891989 -80523253 + L2 LINE L2 3098 3271 -1 190 348 43 0 chr6 101892257 101892349 -80522893 + MIR SINE MIR 81 176 -86 1468 204 0 4 chr6 101892618 101892898 -80522344 - AluJb SINE Alu -33 279 1 202 254 18 0 chr6 101895386 101895441 -80519801 + GA-rich Low_complexity Low_complexity 2 57 0 1513 248 26 36 chr6 101896396 101896787 -80518455 - MSTB1 LTR MaLR 0 432 46 4991 157 32 15 chr6 101896837 101898066 -80517176 - L1PA15 LINE L1 -3 6162 4924 303 140 20 0 chr6 101898067 101898117 -80517125 - MSTB1 LTR MaLR -378 54 4 627 321 57 19 chr6 101898298 101898507 -80516735 + LTR33 LTR ERVL 10 226 -295 315 354 83 29 chr6 101898504 101898744 -80516498 - LTR33 LTR ERVL -168 353 101 * 250 268 14 0 chr6 101898832 101898903 -80516339 + LTR33 LTR ERVL 450 521 0 225 65 0 0 chr6 101899277 101899308 -80515934 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 936 305 41 9 chr6 101899733 101900074 -80515168 + ERVL LTR ERVL 1622 1973 -3791 1025 307 71 70 chr6 101900130 101900901 -80514341 + ERVL LTR ERVL 2056 2827 -2937 2071 190 29 79 chr6 101901038 101901621 -80513621 + MLT2B3 LTR ERVL 1 554 0 6475 168 6 5 chr6 101901621 101902743 -80512499 + HERVL-B3 LTR ERVL 1 1123 -4531 1640 194 33 57 chr6 101902895 101903318 -80511924 - MER31-int LTR ERV1 -401 4535 4123 2208 232 99 27 chr6 101903318 101903500 -80511742 - MER50 LTR ERV1 0 734 567 1774 120 4 15 chr6 101903500 101903767 -80511475 + AluSq SINE Alu 36 299 -14 2208 232 99 27 chr6 101903767 101904260 -80510982 - MER50 LTR ERV1 -167 567 10 4677 213 85 114 chr6 101904263 101905223 -80510019 - MER31-int LTR ERV1 -898 5433 4446 13364 164 55 15 chr6 101905223 101907836 -80507406 + Tigger2 DNA MER2_type 2 2718 0 4677 213 85 114 chr6 101907836 101909652 -80505590 - MER31-int LTR ERV1 -1885 4446 2740 284 236 0 0 chr6 101909743 101909798 -80505444 - MER31A LTR ERV1 -397 88 34 189 0 0 0 chr6 101909842 101909863 -80505379 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1077 305 27 15 chr6 101909916 101910244 -80504998 - MER31-int LTR ERV1 -4091 2240 1909 502 211 211 49 chr6 101910280 101910596 -80504646 - MER31-int LTR ERV1 -4329 1908 445 253 231 62 0 chr6 101910906 101910971 -80504271 + L1MC4 LINE L1 6956 7024 -1018 4043 77 2 5 chr6 101911003 101912319 -80502923 + L1P LINE L1 1 1439 -4707 26 30 0 0 chr6 101912492 101912525 -80502717 + AT_rich Low_complexity Low_complexity 1 33 0 441 291 156 11 chr6 101912526 101912705 -80502537 - MIR SINE MIR -1 261 57 24 32 0 0 chr6 101912761 101912792 -80502450 + AT_rich Low_complexity Low_complexity 1 31 0 1289 220 137 26 chr6 101913694 101913863 -80501379 - MSTD LTR MaLR -7 389 240 186 43 0 0 chr6 101913863 101913886 -80501356 + (GA)n Simple_repeat Simple_repeat 2 24 0 1289 220 137 26 chr6 101913886 101914066 -80501176 - MSTD LTR MaLR -156 240 1 324 0 0 0 chr6 101914120 101914156 -80501086 + (TG)n Simple_repeat Simple_repeat 2 37 0 640 261 121 76 chr6 101914485 101914965 -80500277 + MLT1G3 LTR MaLR 21 562 -5 1409 261 28 15 chr6 101914998 101915389 -80499853 + MSTD LTR MaLR 1 396 0 465 305 111 48 chr6 101916827 101917326 -80497916 + MLT1F LTR MaLR 58 542 0 247 263 53 0 chr6 101917405 101917481 -80497761 + MER110 LTR ERV1 101 180 -311 843 262 83 51 chr6 101917572 101917885 -80497357 + MER110 LTR ERV1 167 489 -2 1025 303 51 14 chr6 101918353 101918782 -80496460 + L1MCc LINE L1 40 484 -5939 2046 304 61 55 chr6 101918999 101919767 -80495475 + L1MCc LINE L1 787 1548 -5393 180 111 0 0 chr6 101919767 101919794 -80495448 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2046 304 61 55 chr6 101919794 101920651 -80494591 + L1MCc LINE L1 1548 2434 -4507 2237 139 69 10 chr6 101921182 101921586 -80493656 + MSTA LTR MaLR 1 428 0 255 192 0 0 chr6 101922485 101922558 -80492684 + CT-rich Low_complexity Low_complexity 2 74 0 429 20 0 0 chr6 101922558 101922608 -80492634 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr6 101922656 101922678 -80492564 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 101924353 101924376 -80490866 + AT_rich Low_complexity Low_complexity 1 23 0 1866 153 15 32 chr6 101924543 101924884 -80490358 + MER44D DNA MER2_type 4 608 -1 216 160 0 40 chr6 101925389 101925439 -80489803 + A-rich Low_complexity Low_complexity 2 49 0 22 0 0 0 chr6 101926479 101926501 -80488741 + AT_rich Low_complexity Low_complexity 1 22 0 211 193 0 35 chr6 101927313 101927370 -80487872 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 23 54 0 0 chr6 101927536 101927573 -80487669 + AT_rich Low_complexity Low_complexity 1 37 0 268 354 105 19 chr6 101930413 101930622 -80484620 + L2 LINE L2 2804 3030 -242 29 0 0 0 chr6 101930709 101930738 -80484504 + AT_rich Low_complexity Low_complexity 1 29 0 2283 91 7 13 chr6 101932051 101932359 -80482883 - AluSg SINE Alu -4 306 1 38 68 0 0 chr6 101932949 101933022 -80482220 + AT_rich Low_complexity Low_complexity 1 73 0 214 119 24 24 chr6 101934897 101934939 -80480303 + GA-rich Low_complexity Low_complexity 1 42 0 192 77 0 0 chr6 101936248 101936274 -80478968 + MIR SINE MIR 116 141 -121 396 125 0 47 chr6 101936613 101936677 -80478565 + MLT1D LTR MaLR 4 64 -441 1230 162 57 0 chr6 101936677 101936887 -80478355 - MER47B DNA MER2_type 0 418 197 920 210 6 0 chr6 101936994 101937161 -80478081 - MER47B DNA MER2_type -243 175 8 1629 210 79 30 chr6 101937168 101937596 -80477646 + MLT1D LTR MaLR 57 505 0 2254 97 3 10 chr6 101937900 101938211 -80477031 + AluSc SINE Alu 1 309 0 1674 210 12 3 chr6 101938371 101938699 -80476543 + MLT1C LTR MaLR 135 465 -2 5280 72 9 0 chr6 101939206 101939901 -80475341 + L1PA7 LINE L1 5454 6154 0 180 244 85 61 chr6 101939914 101939996 -80475246 - L2 LINE L2 -1891 1423 1340 36 0 0 0 chr6 101941065 101941101 -80474141 + AT_rich Low_complexity Low_complexity 1 36 0 1027 289 171 40 chr6 101941596 101942311 -80472931 + L2 LINE L2 2500 3308 -5 834 168 0 0 chr6 101942335 101942466 -80472776 - FLAM_C SINE Alu -2 131 1 2166 189 36 2 chr6 101943233 101943645 -80471597 + MSTB LTR MaLR 1 426 0 264 267 91 48 chr6 101944312 101944499 -80470743 - LTR33 LTR ERVL -20 501 307 615 321 16 11 chr6 101944553 101944740 -80470502 - LTR33 LTR ERVL -311 210 23 1216 208 35 109 chr6 101946309 101946704 -80468538 - MLT1A2 LTR MaLR 0 374 9 335 325 67 29 chr6 101946969 101947148 -80468094 + L1ME LINE L1 5376 5551 -570 622 282 13 6 chr6 101947184 101947340 -80467902 + MLT1E1 LTR MaLR 4 160 -433 4300 252 106 45 chr6 101947347 101948851 -80466391 + Tigger6b DNA MER2_type 1 1597 0 897 259 89 33 chr6 101948851 101949192 -80466050 + MLT1E1 LTR MaLR 165 630 -24 403 292 15 15 chr6 101949955 101950085 -80465157 + MER5A DNA MER1_type 38 167 -22 331 168 35 29 chr6 101950171 101950344 -80464898 + (TA)n Simple_repeat Simple_repeat 2 175 0 261 0 0 0 chr6 101950375 101950404 -80464838 + (CA)n Simple_repeat Simple_repeat 2 30 0 1606 242 138 13 chr6 101950621 101951402 -80463840 - L1MC4 LINE L1 -27 8015 7137 31 0 0 0 chr6 101951452 101951483 -80463759 + AT_rich Low_complexity Low_complexity 1 31 0 31936 29 5 0 chr6 101951496 101956151 -80459091 - L1PA2 LINE L1 0 6155 1485 11171 138 16 12 chr6 101956251 101957967 -80457275 + HERVL-B3 LTR ERVL 3931 5654 0 2021 208 31 78 chr6 101957967 101958548 -80456694 + MLT2B3 LTR ERVL 1 554 0 577 327 32 0 chr6 101958560 101958780 -80456462 + HERVL LTR ERVL 3048 3274 -2380 347 299 84 19 chr6 101958924 101959078 -80456164 + LTR33 LTR ERVL 5 168 -353 382 311 77 10 chr6 101959165 101959361 -80455881 + LTR33 LTR ERVL 280 488 -33 285 242 10 20 chr6 101959428 101959527 -80455715 + MLT1J LTR MaLR 414 511 0 245 326 35 58 chr6 101960212 101960384 -80454858 + L2 LINE L2 3122 3289 -24 268 356 74 15 chr6 101960589 101960724 -80454518 + MIR SINE MIR 8 150 -112 215 300 0 0 chr6 101960780 101960840 -80454402 + A-rich Low_complexity Low_complexity 2 61 0 286 345 124 0 chr6 101961092 101961237 -80454005 + MLT1I LTR MaLR 44 206 -203 1530 168 113 20 chr6 101962790 101963135 -80452107 - L1MB1 LINE L1 -262 5927 5551 1197 226 9 49 chr6 101963144 101963494 -80451748 + L1MA10 LINE L1 5996 6331 -3 27 62 0 0 chr6 101963637 101963685 -80451557 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr6 101963753 101963777 -80451465 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 101963934 101963959 -80451283 + AT_rich Low_complexity Low_complexity 1 25 0 4876 171 14 0 chr6 101964975 101965755 -80449487 + ERVL LTR ERVL 4490 5280 -484 43 20 0 0 chr6 101967128 101967178 -80448064 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr6 101968650 101968671 -80446571 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 101968946 101968968 -80446274 + AT_rich Low_complexity Low_complexity 1 22 0 307 306 52 37 chr6 101970414 101970548 -80444694 - L2 LINE L2 -184 3088 2953 2258 103 0 10 chr6 101970817 101971127 -80444115 - AluSc SINE Alu -2 307 1 622 12 37 0 chr6 101971127 101971209 -80444033 + (TTTTC)n Simple_repeat Simple_repeat 2 86 0 2009 100 7 11 chr6 101971209 101971489 -80443753 - AluSc SINE Alu -30 279 1 711 294 166 35 chr6 101971575 101972038 -80443204 - MLT1H1 LTR MaLR 0 555 32 827 182 6 68 chr6 101972229 101972405 -80442837 - AluJ SINE Alu -17 295 131 303 140 0 0 chr6 101972408 101972458 -80442784 + (T)n Simple_repeat Simple_repeat 1 50 0 839 181 0 0 chr6 101972460 101972593 -80442649 - AluJ SINE Alu -169 133 1 231 61 0 0 chr6 101972800 101972833 -80442409 + (TC)n Simple_repeat Simple_repeat 2 34 0 326 280 98 8 chr6 101972865 101972997 -80442245 + MIR SINE MIR 53 196 -66 2819 191 60 67 chr6 101973880 101974729 -80440513 - L1MA9 LINE L1 -7 6305 5463 13083 178 53 22 chr6 101974729 101977220 -80438022 + L1MA2 LINE L1 16 2582 -4983 3068 109 2 30 chr6 101977461 101977955 -80437287 + L1MA2 LINE L1 2584 3063 -4502 635 156 0 0 chr6 101977953 101978062 -80437180 + L1MA2 LINE L1 2947 3055 -4510 * 9684 168 23 11 chr6 101978059 101980943 -80434299 + L1MA2 LINE L1 4745 7698 -25 1611 254 77 12 chr6 101981269 101981750 -80433492 - LTR40a LTR ERVL 0 519 8 1230 216 31 4 chr6 101981779 101982034 -80433208 - HERVL40 LTR ERVL -22 5508 5247 276 308 21 77 chr6 101983081 101983224 -80432018 - HERVL40 LTR ERVL -874 4656 4522 * 3983 279 31 42 chr6 101983222 101985327 -80429915 - HERVL40 LTR ERVL -1222 4308 2104 3327 263 68 91 chr6 101985346 101986899 -80428343 - HERVL40 LTR ERVL -3994 1536 19 784 268 41 61 chr6 101986946 101987241 -80428001 - LTR40b LTR ERVL -42 420 132 826 217 0 0 chr6 101987305 101987457 -80427785 - LTR40a LTR ERVL -367 152 1 234 196 0 18 chr6 101987494 101987550 -80427692 + CT-rich Low_complexity Low_complexity 2 56 0 312 70 0 0 chr6 101987553 101987596 -80427646 + (CA)n Simple_repeat Simple_repeat 2 44 0 395 314 6 57 chr6 101989445 101989604 -80425638 - MIR SINE MIR -103 159 9 249 264 77 44 chr6 101990370 101990461 -80424781 - L2 LINE L2 -42 3230 3137 269 326 52 107 chr6 101990534 101991077 -80424165 - L2 LINE L2 -453 2861 2349 219 362 0 0 chr6 101991145 101991214 -80424028 - L2 LINE L2 -993 2321 2253 315 237 195 8 chr6 101992222 101992340 -80422902 + HAL1b LINE L1 250 389 -959 392 280 28 9 chr6 101992347 101992454 -80422788 - L2 LINE L2 -6 3307 3199 281 291 33 66 chr6 101992457 101992639 -80422603 + HAL1b LINE L1 393 568 -780 258 263 64 19 chr6 101992824 101992980 -80422262 + HAL1b LINE L1 646 808 -540 238 285 76 21 chr6 101993207 101993351 -80421891 + L1P LINE L1 3593 3744 -2402 1134 241 60 65 chr6 101994045 101994443 -80420799 - MER110 LTR ERV1 -33 458 63 222 318 252 12 chr6 101994475 101994796 -80420446 + L2 LINE L2 1701 2098 -1216 628 184 14 0 chr6 101995465 101995612 -80419630 + CT-rich Low_complexity Low_complexity 4 152 0 305 228 0 10 chr6 101995634 101995735 -80419507 + CT-rich Low_complexity Low_complexity 2 101 0 1331 114 43 0 chr6 101995952 101996163 -80419079 - L1PA16 LINE L1 -592 5574 5355 3035 150 71 16 chr6 101996163 101996706 -80418536 + L1PA16 LINE L1 5575 6165 -1 1983 138 79 15 chr6 101997224 101997565 -80417677 + THE1B LTR MaLR 2 364 0 11190 114 2 5 chr6 101997565 101999149 -80416093 + THE1B-int LTR MaLR 1 1580 0 1900 133 81 26 chr6 101999149 101999494 -80415748 + THE1B LTR MaLR 1 364 0 306 336 53 6 chr6 101999626 101999786 -80415456 + MER20B DNA MER1_type 32 201 -18 2003 132 0 7 chr6 101999791 102000086 -80415156 + AluSx SINE Alu 1 293 -19 23 68 0 0 chr6 102000182 102000226 -80415016 + AT_rich Low_complexity Low_complexity 1 44 0 8801 219 26 24 chr6 102000586 102001373 -80413869 - L1MA9 LINE L1 -38 7295 6511 1783 130 4 0 chr6 102001373 102001661 -80413581 - AluSc SINE Alu 0 309 44 8801 219 26 24 chr6 102001661 102002141 -80413101 - L1MA9 LINE L1 -822 6511 6033 2284 86 0 0 chr6 102002141 102002433 -80412809 - AluY SINE Alu -19 292 1 8801 219 26 24 chr6 102002433 102002964 -80412278 - L1MA9 LINE L1 -1300 6033 5505 2776 78 0 26 chr6 102002964 102003349 -80411893 + THE1C LTR MaLR 1 375 0 8801 219 26 24 chr6 102003349 102004772 -80410470 - L1MA9 LINE L1 -1828 5505 4064 8621 234 54 34 chr6 102004788 102007563 -80407679 - L1MA9 LINE L1 -4323 2845 13 348 321 135 17 chr6 102007596 102007892 -80407350 - L1M4 LINE L1 -1873 4273 3943 333 346 43 22 chr6 102008147 102008332 -80406910 - MIR SINE MIR -5 257 69 227 233 139 23 chr6 102008725 102008811 -80406431 + LTR67 LTR ERVL 458 553 -4 317 364 79 0 chr6 102009885 102010025 -80405217 + ERVL LTR ERVL 4074 4224 -1540 429 278 67 22 chr6 102010492 102010672 -80404570 + ERVL LTR ERVL 4883 5070 -694 356 128 0 3 chr6 102011158 102011392 -80403850 + AluSg SINE Alu 1 302 0 1489 270 165 25 chr6 102012097 102012789 -80402453 + LTR50 LTR ERVL 7 795 0 412 307 28 22 chr6 102013031 102013210 -80402032 - LTR33 LTR ERVL -3 518 339 607 264 156 26 chr6 102013245 102013476 -80401766 - LTR33 LTR ERVL -247 274 14 1225 233 45 28 chr6 102015745 102016102 -80399140 - MLT1A2 LTR MaLR -11 363 1 217 264 44 22 chr6 102016286 102016377 -80398865 + MIR SINE MIR 112 204 -58 348 24 0 0 chr6 102016454 102016495 -80398747 + (TA)n Simple_repeat Simple_repeat 2 42 0 2105 124 0 3 chr6 102017116 102017422 -80397820 + AluSx SINE Alu 1 305 -7 1873 162 16 3 chr6 102017433 102017561 -80397681 + AluSx SINE Alu 1 126 -186 192 40 0 0 chr6 102017561 102017586 -80397656 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1873 162 16 3 chr6 102017586 102017765 -80397477 + AluSx SINE Alu 126 312 0 1387 234 87 80 chr6 102019485 102020048 -80395194 + MLT1F1 LTR MaLR 1 567 0 395 281 101 65 chr6 102020226 102020532 -80394710 - L2 LINE L2 -126 3187 2871 400 243 50 50 chr6 102020596 102020736 -80394506 - LTR16A1 LTR ERVL -317 140 1 207 0 0 0 chr6 102021061 102021084 -80394158 + (T)n Simple_repeat Simple_repeat 1 23 0 1328 212 78 18 chr6 102021493 102021879 -80393363 + Charlie1 DNA MER1_type 2353 2761 0 3006 165 21 30 chr6 102022050 102022673 -80392569 - Tigger3(Golem) DNA MER2_type -6 3023 2407 23 78 0 0 chr6 102022721 102022772 -80392470 + AT_rich Low_complexity Low_complexity 1 51 0 23 86 0 0 chr6 102023477 102023535 -80391707 + AT_rich Low_complexity Low_complexity 1 58 0 229 305 0 0 chr6 102023904 102023963 -80391279 - MIR SINE MIR -128 134 76 2126 127 0 13 chr6 102024023 102024331 -80390911 + AluSg SINE Alu 1 304 -6 212 304 101 0 chr6 102024412 102024491 -80390751 + MIR SINE MIR 103 189 -73 2157 228 55 40 chr6 102024744 102025256 -80389986 - MLT1E1 LTR MaLR 0 654 131 2334 58 0 3 chr6 102025256 102025548 -80389694 + AluY SINE Alu 1 291 -20 2157 228 55 40 chr6 102025548 102025613 -80389629 - MLT1E1 LTR MaLR -523 131 68 466 218 69 149 chr6 102025762 102026037 -80389205 + MER112 DNA MER1_type 2 254 -6 22 0 0 0 chr6 102027013 102027035 -80388207 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 102028315 102028339 -80386903 + AT_rich Low_complexity Low_complexity 1 24 0 707 108 0 0 chr6 102029139 102029250 -80385992 - L1PA13 LINE L1 -2 6161 6051 619 105 0 0 chr6 102029250 102029336 -80385906 + L1PA13 LINE L1 5856 5941 -222 189 0 0 0 chr6 102029572 102029593 -80385649 + (T)n Simple_repeat Simple_repeat 1 21 0 23 101 0 0 chr6 102029939 102030018 -80385224 + AT_rich Low_complexity Low_complexity 1 79 0 33 66 0 0 chr6 102031399 102031460 -80383782 + AT_rich Low_complexity Low_complexity 1 61 0 1668 155 38 76 chr6 102031954 102032347 -80382895 + L1MA8 LINE L1 5667 6044 -247 5842 101 21 14 chr6 102032347 102033963 -80381279 + L1PA13 LINE L1 4532 6163 0 589 195 57 16 chr6 102034049 102034172 -80381070 + FRAM SINE Alu 38 165 -11 388 297 85 29 chr6 102034393 102034639 -80380603 + L1MC4 LINE L1 7161 7420 -622 534 104 1 0 chr6 102034964 102035060 -80380182 - L1M LINE L1 -809 5357 5273 4048 151 51 17 chr6 102035060 102035811 -80379431 + L1PA16 LINE L1 5377 6152 -14 884 284 132 38 chr6 102035862 102036873 -80378369 - L1M4 LINE L1 -1101 5045 3940 26 74 0 0 chr6 102036964 102037018 -80378224 + AT_rich Low_complexity Low_complexity 1 54 0 523 272 141 45 chr6 102037072 102037384 -80377858 - L1M4 LINE L1 -2478 3668 3327 233 209 0 0 chr6 102037403 102037446 -80377796 - MLT1H LTR MaLR -18 537 495 261 0 0 0 chr6 102037476 102037505 -80377737 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 249 271 23 30 chr6 102037517 102037650 -80377592 - L1M4 LINE L1 -1859 4287 4156 1273 249 41 72 chr6 102037701 102038143 -80377099 - MLT1H LTR MaLR -121 428 1 391 286 56 73 chr6 102038143 102038455 -80376787 - L1M4 LINE L1 -2802 3344 3034 249 255 64 85 chr6 102041176 102041317 -80373925 + MIR SINE MIR 110 247 -15 321 82 0 0 chr6 102042737 102042786 -80372456 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr6 102043629 102043657 -80371585 + AT_rich Low_complexity Low_complexity 1 28 0 226 279 29 0 chr6 102044224 102044292 -80370950 - L3 LINE CR1 -19 1558 1489 238 293 9 38 chr6 102044302 102044408 -80370834 - MLT1K LTR MaLR -18 570 468 2491 54 0 16 chr6 102044454 102044800 -80370442 - AluY SINE Alu 0 341 1 1045 235 87 16 chr6 102045221 102045661 -80369581 + MLT1D LTR MaLR 1 505 0 230 322 0 110 chr6 102046150 102046268 -80368974 - L3 LINE CR1 -462 1115 1011 2251 114 0 0 chr6 102046637 102046943 -80368299 - AluSg SINE Alu -4 306 1 432 291 72 57 chr6 102047052 102047541 -80367701 - L1M3 LINE L1 -390 5793 5280 1644 184 45 0 chr6 102047857 102048188 -80367054 + MER7A DNA MER2_type 2 345 -1 577 306 114 22 chr6 102048299 102049068 -80366174 - L1M3 LINE L1 -1465 4681 3842 242 196 20 20 chr6 102049231 102049282 -80365960 - MER81 DNA DNA -29 85 35 1147 180 24 28 chr6 102051533 102051783 -80363459 + MER44D DNA MER2_type 1 519 -90 734 251 51 9 chr6 102051786 102052000 -80363242 + MER8 DNA MER2_type 1 344 -1 463 244 0 0 chr6 102052000 102052085 -80363157 + MER44D DNA MER2_type 620 704 -1 272 337 59 28 chr6 102052511 102053125 -80362117 - L1M3 LINE L1 -3401 2745 2113 479 152 30 20 chr6 102053176 102053275 -80361967 - L1MC2 LINE L1 -1 6343 6244 2498 244 65 29 chr6 102053275 102054150 -80361092 - L1M4 LINE L1 -929 5217 4309 408 292 90 75 chr6 102054151 102054794 -80360448 - L1MEd LINE L1 -5040 1079 427 307 284 56 37 chr6 102055004 102055166 -80360076 - L1MEd LINE L1 -5948 171 7 198 315 14 27 chr6 102055713 102055786 -80359456 + L2 LINE L2 3242 3313 0 216 0 0 0 chr6 102056370 102056394 -80358848 + (T)n Simple_repeat Simple_repeat 1 24 0 244 256 26 13 chr6 102056885 102056963 -80358279 - MER116 DNA Mariner 0 80 2 376 311 79 67 chr6 102056964 102057369 -80357873 - MLT1L LTR MaLR 0 615 206 1325 191 30 88 chr6 102058959 102059218 -80356024 - MER58B DNA MER1_type -2079 341 106 2547 4 0 0 chr6 102059218 102059534 -80355708 + AluY SINE Alu 1 316 0 1325 191 30 88 chr6 102059534 102059635 -80355607 - MER58B DNA MER1_type -2314 106 1 439 121 73 12 chr6 102059719 102059884 -80355358 + (TA)n Simple_repeat Simple_repeat 2 176 0 263 129 43 29 chr6 102059890 102059960 -80355282 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 516 121 28 39 chr6 102059966 102060148 -80355094 + (TA)n Simple_repeat Simple_repeat 1 180 0 188 35 35 0 chr6 102060159 102060188 -80355054 + (TA)n Simple_repeat Simple_repeat 1 30 0 278 277 48 12 chr6 102060188 102060271 -80354971 - MIR SINE MIR -137 125 40 1417 24 0 0 chr6 102060795 102060964 -80354278 - L1PA2 LINE L1 0 6155 5987 525 190 15 58 chr6 102061313 102061450 -80353792 - MLT1E2 LTR MaLR -445 181 51 289 293 8 68 chr6 102061642 102061775 -80353467 + MIR SINE MIR 82 206 -56 21 0 0 0 chr6 102061893 102061914 -80353328 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 102064051 102064074 -80351168 + (T)n Simple_repeat Simple_repeat 1 23 0 2374 47 33 0 chr6 102064548 102064849 -80350393 + AluY SINE Alu 1 311 0 650 295 70 13 chr6 102065058 102065285 -80349957 - MIR SINE MIR -17 245 6 309 291 9 82 chr6 102065397 102065507 -80349735 + L2 LINE L2 3210 3311 -2 24 32 0 0 chr6 102065588 102065619 -80349623 + AT_rich Low_complexity Low_complexity 1 31 0 304 337 10 10 chr6 102066622 102066720 -80348522 - MIR SINE MIR -121 141 44 421 352 56 10 chr6 102067519 102067715 -80347527 - MIR SINE MIR -21 241 37 1986 115 14 3 chr6 102068942 102069229 -80346013 - AluSp SINE Alu -22 291 2 183 204 0 0 chr6 102069334 102069383 -80345859 + (TA)n Simple_repeat Simple_repeat 2 50 0 25 65 0 0 chr6 102070540 102070586 -80344656 + AT_rich Low_complexity Low_complexity 1 46 0 231 36 0 0 chr6 102070650 102070678 -80344564 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 183 42 0 0 chr6 102070881 102070905 -80344337 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 209 305 49 24 chr6 102071173 102071255 -80343987 - L2 LINE L2 -27 3286 3203 21 82 0 0 chr6 102071457 102071506 -80343736 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr6 102071645 102071677 -80343565 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 102073125 102073147 -80342095 + AT_rich Low_complexity Low_complexity 1 22 0 273 235 44 15 chr6 102073324 102073392 -80341850 + L2 LINE L2 3203 3272 0 260 280 50 33 chr6 102073730 102073912 -80341330 + L1MC/D LINE L1 5610 5794 -2014 31 0 0 0 chr6 102073991 102074022 -80341220 + AT_rich Low_complexity Low_complexity 1 31 0 496 65 26 0 chr6 102074122 102074199 -80341043 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 315 259 148 30 chr6 102074463 102074598 -80340644 + MIR SINE MIR 109 259 -3 187 353 0 15 chr6 102074668 102074736 -80340506 + L2 LINE L2 3196 3262 -10 216 0 0 0 chr6 102075414 102075438 -80339804 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 207 0 0 0 chr6 102075545 102075568 -80339674 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 294 158 13 26 chr6 102076353 102076429 -80338813 + CT-rich Low_complexity Low_complexity 3 77 0 228 67 0 0 chr6 102076498 102076528 -80338714 + (TG)n Simple_repeat Simple_repeat 1 30 0 31 88 0 0 chr6 102078884 102078964 -80336278 + AT_rich Low_complexity Low_complexity 1 80 0 1788 122 7 4 chr6 102079169 102079439 -80335803 - AluSc SINE Alu 0 309 39 186 133 0 0 chr6 102079444 102079474 -80335768 + (TC)n Simple_repeat Simple_repeat 1 30 0 2433 79 3 0 chr6 102079802 102080107 -80335135 + AluSp SINE Alu 1 306 -7 324 0 0 0 chr6 102080107 102080143 -80335099 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr6 102081052 102081073 -80334169 + AT_rich Low_complexity Low_complexity 1 21 0 388 330 102 25 chr6 102081696 102081932 -80333310 - MIR SINE MIR 0 262 9 247 320 104 24 chr6 102082596 102082721 -80332521 + MIR SINE MIR 5 139 -123 1979 151 3 0 chr6 102082759 102083064 -80332178 - AluSq SINE Alu -7 306 1 297 298 149 57 chr6 102083118 102083521 -80331721 - L2 LINE L2 -14 3299 2860 21 57 0 0 chr6 102083635 102083670 -80331572 + AT_rich Low_complexity Low_complexity 1 35 0 650 319 0 0 chr6 102083686 102083874 -80331368 - MIR SINE MIR -10 252 65 23 0 0 0 chr6 102084811 102084834 -80330408 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr6 102085714 102085749 -80329493 + AT_rich Low_complexity Low_complexity 1 35 0 2010 149 116 18 chr6 102086129 102086517 -80328725 - MSTA LTR MaLR -2 426 1 200 121 30 0 chr6 102086625 102086658 -80328584 + T-rich Low_complexity Low_complexity 3 36 0 264 246 31 0 chr6 102086732 102086797 -80328445 - MIR SINE MIR -111 151 85 24 0 0 0 chr6 102086976 102087000 -80328242 + AT_rich Low_complexity Low_complexity 1 24 0 4121 170 74 11 chr6 102087087 102088151 -80327091 + L1MA7 LINE L1 4965 6291 0 460 261 23 23 chr6 102089245 102089421 -80325821 + MER104 DNA MER2_type 4 179 -1 195 100 0 0 chr6 102090243 102090273 -80324969 + (TG)n Simple_repeat Simple_repeat 2 31 0 378 0 0 0 chr6 102090908 102090950 -80324292 + (TA)n Simple_repeat Simple_repeat 2 43 0 627 81 0 0 chr6 102091178 102091264 -80323978 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 327 213 0 0 chr6 102091270 102091350 -80323892 + (TA)n Simple_repeat Simple_repeat 1 80 0 1269 234 37 58 chr6 102091814 102092195 -80323047 - MLT1B LTR MaLR -7 383 11 528 226 0 0 chr6 102092212 102092314 -80322928 - MLT1B-int LTR MaLR 0 1735 1634 2618 23 0 0 chr6 102092646 102092945 -80322297 - AluY SINE Alu -11 300 2 857 325 66 13 chr6 102093025 102093671 -80321571 - L1M4 LINE L1 -4541 2597 1770 207 0 0 0 chr6 102093673 102093696 -80321546 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 300 239 67 30 chr6 102093837 102093971 -80321271 - L1M4 LINE L1 -5324 1535 1397 1091 244 98 58 chr6 102094045 102094524 -80320718 - L1MC4 LINE L1 -149 7893 7396 872 222 119 11 chr6 102094523 102094784 -80320458 - L1MC4 LINE L1 -980 7062 6774 * 266 267 0 17 chr6 102094826 102094886 -80320356 + (TG)n Simple_repeat Simple_repeat 2 60 0 400 188 0 0 chr6 102094887 102094956 -80320286 + Tigger2 DNA MER2_type 1 69 -2649 * 690 214 57 13 chr6 102094940 102095099 -80320143 + Tigger2 DNA MER2_type 2267 2432 -286 7264 45 0 2 chr6 102095364 102096638 -80318604 - L1PA5 LINE L1 0 6154 4884 1621 166 18 0 chr6 102096644 102096927 -80318315 + Tigger2 DNA MER2_type 2429 2716 -2 488 302 52 16 chr6 102096929 102097177 -80318065 - L1MC4 LINE L1 -1336 6706 6450 1019 220 36 118 chr6 102097341 102097755 -80317487 + MLT1B LTR MaLR 11 390 0 260 320 30 10 chr6 102098446 102098546 -80316696 - L1ME LINE L1 -5448 622 521 300 309 34 99 chr6 102098725 102098958 -80316284 - L1ME LINE L1 -5549 521 304 252 318 12 0 chr6 102099079 102099164 -80316078 - L1ME LINE L1 -5888 182 97 230 177 0 32 chr6 102099861 102099923 -80315319 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 29 70 0 0 chr6 102100025 102100082 -80315160 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr6 102100126 102100147 -80315095 + AT_rich Low_complexity Low_complexity 1 21 0 13251 148 29 25 chr6 102101101 102103509 -80311733 + Tigger1 DNA MER2_type 3 2418 0 26 74 0 0 chr6 102103602 102103656 -80311586 + AT_rich Low_complexity Low_complexity 1 54 0 559 299 21 0 chr6 102104230 102104471 -80310771 + L1ME1 LINE L1 892 1137 -5259 886 283 68 49 chr6 102104534 102104642 -80310600 + L1ME1 LINE L1 1263 1368 -5028 351 0 0 0 chr6 102104642 102104681 -80310561 + (CA)n Simple_repeat Simple_repeat 2 40 0 886 283 68 49 chr6 102104681 102105162 -80310080 + L1ME1 LINE L1 1368 1863 -4533 1612 208 0 10 chr6 102105163 102105475 -80309767 + AluJo SINE Alu 1 309 -3 383 290 14 7 chr6 102105482 102105620 -80309622 + L1ME1 LINE L1 5259 5397 -818 21 0 0 0 chr6 102105623 102105644 -80309598 + AT_rich Low_complexity Low_complexity 1 21 0 2127 252 41 43 chr6 102105646 102105796 -80309446 + L1ME1 LINE L1 5360 5509 -726 1536 172 17 3 chr6 102105796 102106087 -80309155 + L1PB4 LINE L1 5857 6151 -5 2127 252 41 43 chr6 102106087 102106757 -80308485 + L1ME1 LINE L1 5509 6179 -56 27 49 0 0 chr6 102108361 102108402 -80306840 + AT_rich Low_complexity Low_complexity 1 41 0 211 357 57 0 chr6 102108477 102108547 -80306695 - L2 LINE L2 -36 3277 3204 383 324 29 0 chr6 102108620 102108759 -80306483 + MIR SINE MIR 72 214 -48 243 0 0 0 chr6 102109414 102109441 -80305801 + (TA)n Simple_repeat Simple_repeat 1 27 0 216 0 0 0 chr6 102109808 102109832 -80305410 + (T)n Simple_repeat Simple_repeat 1 24 0 488 275 144 53 chr6 102111110 102111563 -80303679 - MLT1F LTR MaLR -3 539 49 26 50 0 0 chr6 102111699 102111739 -80303503 + AT_rich Low_complexity Low_complexity 1 40 0 773 360 88 13 chr6 102112976 102113431 -80301811 + L2 LINE L2 2456 2944 -370 4415 243 66 88 chr6 102113452 102115182 -80300060 - L1M4 LINE L1 -1150 5494 3727 1537 192 22 41 chr6 102115182 102115318 -80299924 + MLT1A1 LTR MaLR 5 142 -223 2736 10 0 0 chr6 102115318 102115621 -80299621 - AluYa5 SINE Alu -8 303 1 1537 192 22 41 chr6 102115621 102115849 -80299393 + MLT1A1 LTR MaLR 142 362 -3 4415 243 66 88 chr6 102115849 102116587 -80298655 - L1M4 LINE L1 -2917 3727 3087 1817 216 108 4 chr6 102116587 102117040 -80298202 + MLT1D LTR MaLR 3 502 -3 4415 243 66 88 chr6 102117040 102117238 -80298004 - L1M4 LINE L1 -3557 3087 2886 303 180 67 11 chr6 102117246 102117335 -80297907 - L1M4 LINE L1 -4087 2738 2645 620 304 81 32 chr6 102117337 102118216 -80297026 - L1M4 LINE L1 -4235 2590 1513 212 310 0 0 chr6 102118793 102118851 -80296391 + CT-rich Low_complexity Low_complexity 3 60 0 2767 155 35 4 chr6 102118863 102119353 -80295889 + L1PA16 LINE L1 5541 6045 -121 4358 184 51 5 chr6 102119615 102120316 -80294926 - L1P LINE L1 -1739 4407 3657 243 0 0 0 chr6 102120316 102120343 -80294899 + (TG)n Simple_repeat Simple_repeat 2 28 0 4358 184 51 5 chr6 102120343 102120508 -80294734 - L1P LINE L1 -2489 3657 3501 2305 111 3 12 chr6 102120508 102120842 -80294400 + THE1C LTR MaLR 1 331 -44 * 3012 62 2 7 chr6 102120840 102121246 -80293996 - LTR7 LTR ERV1 -46 404 1 1892 79 6 23 chr6 102121246 102121572 -80293670 - HERVH LTR ERV1 0 7713 7322 1379 134 19 0 chr6 102121570 102121786 -80293456 - HERVH LTR ERV1 -1894 5819 5600 * 4328 143 1 1 chr6 102121787 102122449 -80292793 - HERVH LTR ERV1 -2564 5149 4488 3354 111 0 8 chr6 102122451 102122957 -80292285 - HERVH LTR ERV1 -3720 3993 3492 916 140 7 0 chr6 102122947 102123097 -80292145 - HERVH LTR ERV1 -4423 3290 3140 * 19354 88 45 14 chr6 102123076 102125981 -80289261 - HERVH LTR ERV1 -4718 2995 1 3471 55 0 7 chr6 102125983 102126434 -80288808 - LTR7 LTR ERV1 -2 448 1 2972 206 52 2 chr6 102126434 102127052 -80288190 - L1P LINE L1 -3129 3017 2369 * 3050 194 9 20 chr6 102127049 102127693 -80287549 + L1PA13 LINE L1 4391 5027 -1119 * 5284 118 12 12 chr6 102127690 102128512 -80286730 + L1PA13 LINE L1 5338 6159 -4 1069 167 14 27 chr6 102128807 102129097 -80286145 + L1MB2 LINE L1 5188 5471 -700 1714 203 5 63 chr6 102129097 102129245 -80285997 - MLT1B LTR MaLR 0 390 235 2037 144 29 29 chr6 102129245 102129620 -80285622 - THE1C LTR MaLR 0 375 1 1714 203 5 63 chr6 102129620 102129885 -80285357 - MLT1B LTR MaLR -155 235 1 3078 191 37 15 chr6 102129922 102130602 -80284640 + L1MB2 LINE L1 5475 6169 -2 1586 160 31 25 chr6 102130285 102130604 -80284638 + L1MB2 LINE L1 5851 6171 0 303 202 96 0 chr6 102130978 102131072 -80284170 - L1MC4 LINE L1 -1334 6708 6606 1176 217 71 116 chr6 102131270 102131703 -80283539 - MLT2B1 LTR ERVL 0 520 114 1984 142 0 0 chr6 102131703 102131999 -80283243 + AluSx SINE Alu 1 296 -16 1176 217 71 116 chr6 102131999 102132099 -80283143 - MLT2B1 LTR ERVL -406 114 11 694 339 50 56 chr6 102132460 102133104 -80282138 + ERVL LTR ERVL 4687 5326 -438 814 297 28 37 chr6 102133251 102133507 -80281735 + LTR16A LTR ERVL 31 285 -165 2689 10 0 0 chr6 102133507 102133805 -80281437 - AluYa5 SINE Alu -13 298 1 814 297 28 37 chr6 102133805 102133875 -80281367 + LTR16A LTR ERVL 285 354 -96 21 36 0 0 chr6 102133984 102134012 -80281230 + AT_rich Low_complexity Low_complexity 1 28 0 543 249 50 116 chr6 102135781 102136022 -80279220 + MIR SINE MIR 38 262 0 284 362 65 36 chr6 102136182 102136320 -80278922 - L2 LINE L2 -9 3263 3122 181 318 0 0 chr6 102136433 102136496 -80278746 + L2 LINE L2 3207 3269 -3 2542 184 42 20 chr6 102137242 102137751 -80277491 - MLT2A1 LTR ERVL 0 520 1 1251 202 50 66 chr6 102140489 102140885 -80274357 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr6 102141144 102141165 -80274077 + AT_rich Low_complexity Low_complexity 1 21 0 12379 225 49 22 chr6 102141395 102144486 -80270756 - L1PB3 LINE L1 -1 6869 3604 2071 87 3 32 chr6 102144486 102144797 -80270445 - AluY SINE Alu -9 302 1 12379 225 49 22 chr6 102144797 102146810 -80268432 - L1PB3 LINE L1 -3266 3604 1647 2554 125 3 8 chr6 102146811 102147188 -80268054 + THE1C LTR MaLR 1 375 0 201 74 0 0 chr6 102147203 102147230 -80268012 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 370 0 0 0 chr6 102147238 102147280 -80267962 - L1PB2 LINE L1 -54 6097 6056 995 171 57 5 chr6 102147280 102147491 -80267751 - L1PB3 LINE L1 -5239 1624 1403 513 285 6 6 chr6 102147526 102147684 -80267558 - L1PB3 LINE L1 -6704 159 2 506 313 12 12 chr6 102147844 102148007 -80267235 + LTR16A LTR ERVL 113 275 -175 656 302 105 12 chr6 102148263 102148511 -80266731 + LTR16A LTR ERVL 18 288 -162 250 247 37 0 chr6 102148710 102148791 -80266451 + (TA)n Simple_repeat Simple_repeat 2 85 0 2376 59 0 10 chr6 102151353 102151657 -80263585 + AluY SINE Alu 1 301 -10 25 65 0 0 chr6 102152403 102152449 -80262793 + AT_rich Low_complexity Low_complexity 1 46 0 275 303 126 0 chr6 102152969 102153088 -80262154 + L2 LINE L2 3179 3312 -1 941 261 39 69 chr6 102153703 102154067 -80261175 - MLT1H1 LTR MaLR -33 522 170 235 362 61 58 chr6 102154131 102154457 -80260785 + L2 LINE L2 2946 3272 0 42579 33 21 1 chr6 102156426 102162457 -80252785 - L1HS LINE L1 0 6155 1 277 333 117 40 chr6 102162650 102162899 -80252343 + L1ME LINE L1 5494 5761 -360 1748 169 3 21 chr6 102164724 102164826 -80250416 + L1PA16 LINE L1 5828 5930 -236 2040 182 52 0 chr6 102164826 102165233 -80250009 + MSTA LTR MaLR 1 428 0 1748 169 3 21 chr6 102165233 102165462 -80249780 + L1PA16 LINE L1 5930 6153 -13 227 125 18 18 chr6 102165893 102165949 -80249293 + L1MC4 LINE L1 6649 6704 -1338 194 173 53 0 chr6 102166000 102166075 -80249167 + (TA)n Simple_repeat Simple_repeat 2 80 0 186 191 0 0 chr6 102167033 102167075 -80248167 + T-rich Low_complexity Low_complexity 1 42 0 247 358 105 21 chr6 102167146 102167336 -80247906 + MIR SINE MIR 2 207 -55 263 278 78 56 chr6 102168111 102168291 -80246951 - L1ME3A LINE L1 -22 6148 5965 1337 260 33 37 chr6 102168485 102168996 -80246246 - L1ME3A LINE L1 -372 5798 5290 1010 254 52 15 chr6 102169008 102169280 -80245962 - AluJo SINE Alu -30 282 1 229 255 113 35 chr6 102169281 102169422 -80245820 - L1ME3A LINE L1 -840 5306 5155 22 35 0 0 chr6 102170808 102170837 -80244405 + AT_rich Low_complexity Low_complexity 1 29 0 7323 43 1 0 chr6 102171345 102172828 -80242414 - L1PA5 LINE L1 0 6154 4674 3165 34 0 0 chr6 102172828 102173209 -80242033 + L1PA5 LINE L1 4278 4658 -1488 881 208 40 5 chr6 102174006 102174208 -80241034 + MER3 DNA MER1_type 1 209 0 21 0 0 0 chr6 102174604 102174625 -80240617 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 102174746 102174774 -80240468 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr6 102174906 102174932 -80240310 + AT_rich Low_complexity Low_complexity 1 26 0 1677 113 4 0 chr6 102175608 102175837 -80239405 - AluSx SINE Alu -82 230 1 22 35 0 0 chr6 102177546 102177575 -80237667 + AT_rich Low_complexity Low_complexity 1 29 0 737 194 38 5 chr6 102178102 102178288 -80236954 - L1MC3 LINE L1 -6 7779 7588 242 275 120 35 chr6 102178355 102178497 -80236745 + MIR3 SINE MIR 46 199 -9 356 121 30 76 chr6 102178609 102178675 -80236567 + AluJ/FRAM SINE Alu 229 291 -11 283 178 0 0 chr6 102178732 102178777 -80236465 - L2 LINE L2 -6 3307 3263 188 219 0 24 chr6 102179036 102179077 -80236165 - L2 LINE L2 -87 3226 3187 266 291 19 0 chr6 102179330 102179433 -80235809 - MER94 DNA DNA -29 105 1 24 32 0 0 chr6 102180227 102180258 -80234984 + AT_rich Low_complexity Low_complexity 1 31 0 1513 218 0 0 chr6 102181877 102182171 -80233071 + AluJo SINE Alu 1 294 -18 305 293 15 0 chr6 102182607 102182740 -80232502 + HAL1 LINE L1 2245 2379 -128 324 278 41 0 chr6 102182839 102182936 -80232306 + L2 LINE L2 2221 2321 -993 235 258 206 41 chr6 102182931 102183028 -80232214 + L2 LINE L2 3180 3292 -21 * 23 0 0 0 chr6 102183235 102183258 -80231984 + AT_rich Low_complexity Low_complexity 1 23 0 400 310 60 27 chr6 102183730 102183914 -80231328 + MLT1K LTR MaLR 369 558 -30 235 363 48 20 chr6 102184282 102184428 -80230814 + L2 LINE L2 3029 3178 -94 1667 200 165 35 chr6 102185346 102185831 -80229411 + MER44D DNA MER2_type 3 605 0 364 307 89 35 chr6 102186532 102186734 -80228508 - L3b LINE CR1 -263 1320 1108 396 269 47 71 chr6 102187841 102188053 -80227189 + L2 LINE L2 2012 2218 -1096 510 299 96 94 chr6 102188064 102188545 -80226697 + L2 LINE L2 2816 3297 -16 326 343 62 20 chr6 102188591 102188737 -80226505 + MIR SINE MIR 10 161 -101 892 279 57 11 chr6 102188739 102189019 -80226223 - MLT1C LTR MaLR 0 467 175 390 325 41 0 chr6 102189041 102189164 -80226078 + L2 LINE L2 3184 3311 -2 428 252 120 44 chr6 102189942 102190192 -80225050 + L1ME LINE L1 4783 5051 -1095 22 0 0 0 chr6 102190394 102190416 -80224826 + AT_rich Low_complexity Low_complexity 1 22 0 607 334 41 44 chr6 102190534 102191128 -80224114 - L2 LINE L2 -27 3286 2691 373 353 34 30 chr6 102191130 102191425 -80223817 + L1ME LINE L1 5281 5576 -588 203 250 0 0 chr6 102191889 102191933 -80223309 + (TATG)n Simple_repeat Simple_repeat 4 47 0 355 179 57 0 chr6 102192236 102192342 -80222900 - L1MA7 LINE L1 -1 6290 6179 672 287 49 12 chr6 102192538 102192782 -80222460 + MIR SINE MIR 10 262 0 26 74 0 0 chr6 102192787 102192841 -80222401 + AT_rich Low_complexity Low_complexity 1 54 0 375 286 54 44 chr6 102193018 102193221 -80222021 - L1M4 LINE L1 -3732 2414 2210 1844 136 0 11 chr6 102193255 102193582 -80221660 - AluSx SINE Alu 0 324 1 237 286 103 8 chr6 102194082 102194208 -80221034 - HAL1 LINE L1 -950 1557 1420 1195 248 12 65 chr6 102194208 102194620 -80220622 + MLT1B LTR MaLR 1 390 0 2181 169 3 3 chr6 102195152 102195520 -80219722 - THE1C LTR MaLR -3 372 5 347 145 0 14 chr6 102195524 102195593 -80219649 - THE1C-int LTR MaLR 0 1580 1513 * 5373 228 36 12 chr6 102195591 102196796 -80218446 - THE1C-int LTR MaLR -414 1237 3 2382 139 5 3 chr6 102196798 102197172 -80218070 - THE1C LTR MaLR 0 375 1 3907 146 15 26 chr6 102197803 102198044 -80217198 - HSMAR2 DNA Mariner 0 1302 1060 2058 130 22 43 chr6 102198044 102198414 -80216828 + THE1B LTR MaLR 1 362 -2 3907 146 15 26 chr6 102198414 102198858 -80216384 - HSMAR2 DNA Mariner -242 1060 625 2808 99 11 25 chr6 102198859 102199012 -80216230 - L1PA8A LINE L1 -461 5670 5516 2367 90 0 0 chr6 102199012 102199323 -80215919 + AluY SINE Alu 1 311 0 2808 99 11 25 chr6 102199323 102199772 -80215470 - L1PA8A LINE L1 -615 5516 5077 3033 133 21 0 chr6 102199772 102200250 -80214992 + L1PA10 LINE L1 5667 6156 -12 3593 140 58 2 chr6 102200253 102200860 -80214382 - HSMAR2 DNA Mariner -661 641 1 1941 184 148 40 chr6 102201078 102201633 -80213609 - LTR29 LTR ERV1 -3 619 5 270 345 74 60 chr6 102201826 102202206 -80213036 + LTR16C LTR ERVL 90 474 -17 260 341 94 61 chr6 102203087 102203448 -80211794 + L2 LINE L2 823 1195 -2119 23 33 0 0 chr6 102203639 102203669 -80211573 + AT_rich Low_complexity Low_complexity 1 30 0 314 326 83 23 chr6 102204876 102205094 -80210148 - MIR SINE MIR -30 232 2 48 85 0 0 chr6 102205222 102205340 -80209902 + AT_rich Low_complexity Low_complexity 1 118 0 2100 206 103 38 chr6 102206083 102206620 -80208622 + LTR48B LTR ERV1 5 587 -57 2711 202 45 68 chr6 102206620 102207327 -80207915 - LTR8 LTR ERV1 0 691 1 2100 206 103 38 chr6 102207327 102207390 -80207852 + LTR48B LTR ERV1 587 644 0 24 0 0 0 chr6 102207593 102207617 -80207625 + AT_rich Low_complexity Low_complexity 1 24 0 213 108 0 0 chr6 102208320 102208357 -80206885 + (A)n Simple_repeat Simple_repeat 1 37 0 341 244 80 36 chr6 102208763 102208979 -80206263 + L1ME4a LINE L1 5473 5732 -389 1759 241 53 13 chr6 102208981 102209433 -80205809 + MLT2B2 LTR ERVL 2 471 -44 390 303 139 33 chr6 102209691 102210122 -80205120 + MLT1G1 LTR MaLR 1 537 -58 1910 254 57 12 chr6 102210134 102210692 -80204550 + MER119 DNA MER1_type 1 583 0 314 289 54 59 chr6 102210731 102210935 -80204307 + L1ME4a LINE L1 5834 6036 -85 382 278 52 0 chr6 102210985 102211100 -80204142 + MIR SINE MIR 74 194 -68 270 81 0 0 chr6 102211678 102211715 -80203527 + (TG)n Simple_repeat Simple_repeat 2 38 0 35 54 0 0 chr6 102211958 102212014 -80203228 + AT_rich Low_complexity Low_complexity 1 56 0 3537 97 48 6 chr6 102212073 102212590 -80202652 + L1PA10 LINE L1 5627 6165 -3 1221 40 0 0 chr6 102214833 102214981 -80200261 + L1PA5 LINE L1 6000 6147 -7 201 39 0 0 chr6 102214999 102215025 -80200217 + (TA)n Simple_repeat Simple_repeat 1 26 0 993 234 66 36 chr6 102216159 102216522 -80198720 - MLT1A2 LTR MaLR 0 374 1 225 0 0 0 chr6 102217478 102217503 -80197739 + (A)n Simple_repeat Simple_repeat 1 25 0 1881 168 24 115 chr6 102218409 102218804 -80196438 + MSTB LTR MaLR 1 348 -78 1899 139 14 3 chr6 102218804 102219098 -80196144 - AluSx SINE Alu -13 299 3 1881 168 24 115 chr6 102219098 102219171 -80196071 + MSTB LTR MaLR 348 426 0 22 35 0 0 chr6 102219573 102219602 -80195640 + AT_rich Low_complexity Low_complexity 1 29 0 261 57 0 0 chr6 102219709 102219744 -80195498 + (TG)n Simple_repeat Simple_repeat 1 35 0 213 132 0 0 chr6 102220559 102220597 -80194645 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 282 32 32 chr6 102221278 102221402 -80193840 - L1ME LINE L1 -430 5691 5568 970 304 81 18 chr6 102221886 102222330 -80192912 + MLT1J LTR MaLR 25 496 -15 1664 199 42 0 chr6 102222549 102222880 -80192362 + L1MC3 LINE L1 7361 7705 -80 1471 288 34 13 chr6 102222881 102223356 -80191886 + MLT2F LTR ERVL 179 663 0 1062 308 99 13 chr6 102224836 102225300 -80189942 - MLT1G1 LTR MaLR -1 594 91 552 325 25 0 chr6 102225660 102225817 -80189425 - MIR SINE MIR -73 189 29 891 180 52 28 chr6 102226762 102226973 -80188269 - L1MB8 LINE L1 -2 6176 5961 2587 35 0 10 chr6 102227665 102227979 -80187263 + AluY SINE Alu 1 311 0 24 91 0 0 chr6 102228473 102228539 -80186703 + AT_rich Low_complexity Low_complexity 1 66 0 181 392 63 0 chr6 102229133 102229212 -80186030 + L2 LINE L2 3119 3202 -70 30 27 0 0 chr6 102230085 102230122 -80185120 + AT_rich Low_complexity Low_complexity 1 37 0 294 73 0 0 chr6 102230407 102230448 -80184794 + (TG)n Simple_repeat Simple_repeat 1 41 0 189 0 0 0 chr6 102230447 102230468 -80184774 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 199 358 42 8 chr6 102230916 102231036 -80184206 + L2 LINE L2 2933 3056 -216 315 0 0 0 chr6 102231464 102231499 -80183743 + (TG)n Simple_repeat Simple_repeat 2 36 0 354 349 20 7 chr6 102232280 102232432 -80182810 + MIR3 SINE MIR 50 203 -5 417 70 0 0 chr6 102233116 102233173 -80182069 + (TG)n Simple_repeat Simple_repeat 2 58 0 350 302 16 74 chr6 102236481 102236670 -80178572 + MER5B DNA MER1_type 1 178 0 1085 244 91 12 chr6 102237755 102238075 -80177167 - L1MC3 LINE L1 -265 7520 7176 283 191 15 15 chr6 102238078 102238146 -80177096 - MLT1F1 LTR MaLR -465 102 35 1236 161 19 35 chr6 102238200 102238460 -80176782 - L1MA9 LINE L1 -5 6307 6052 252 313 72 42 chr6 102238460 102238626 -80176616 + L2 LINE L2 2615 2785 -529 220 336 65 9 chr6 102238668 102238775 -80176467 - MER5B DNA MER1_type 0 178 66 21 36 0 0 chr6 102238858 102238886 -80176356 + AT_rich Low_complexity Low_complexity 1 28 0 325 314 44 29 chr6 102239825 102239962 -80175280 + MIR SINE MIR 74 212 -50 410 286 73 97 chr6 102240382 102240641 -80174601 + MLT1J LTR MaLR 177 429 -82 205 352 14 0 chr6 102240739 102240810 -80174432 + L2 LINE L2 3201 3272 0 357 147 46 138 chr6 102240997 102241046 -80174196 + HSMAR2 DNA Mariner 1167 1202 -100 1707 170 32 35 chr6 102241046 102241358 -80173884 + AluJo SINE Alu 2 312 0 357 147 46 138 chr6 102241358 102241417 -80173825 + HSMAR2 DNA Mariner 1202 1265 -37 188 321 188 18 chr6 102241829 102241941 -80173301 - MIR3 SINE MIR -64 144 14 282 116 0 0 chr6 102241966 102242009 -80173233 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 463 254 28 14 chr6 102242041 102242183 -80173059 - MIR SINE MIR -48 214 71 251 267 47 0 chr6 102242188 102242274 -80172968 + (TATG)n Simple_repeat Simple_repeat 2 91 0 237 359 21 21 chr6 102242305 102242447 -80172795 - MIR3 SINE MIR -32 176 35 261 350 14 49 chr6 102242606 102242749 -80172493 - MER5A DNA MER1_type 0 189 52 601 255 66 14 chr6 102242822 102243034 -80172208 - MIR SINE MIR -33 229 7 279 283 31 158 chr6 102243389 102243845 -80171397 - LTR67 LTR ERVL -141 416 19 2061 122 0 31 chr6 102244262 102244582 -80170660 - AluSq SINE Alu -2 311 2 1369 229 157 0 chr6 102245670 102246020 -80169222 + MLT1D LTR MaLR 1 405 -100 435 184 31 12 chr6 102246338 102246453 -80168789 + MLT1D LTR MaLR 407 503 -2 261 0 0 0 chr6 102246472 102246501 -80168741 + (T)n Simple_repeat Simple_repeat 1 29 0 5566 154 33 5 chr6 102246996 102247040 -80168202 + L1MA5 LINE L1 5258 5299 -1001 459 0 0 0 chr6 102247040 102247091 -80168151 + (CA)n Simple_repeat Simple_repeat 2 52 0 5566 154 33 5 chr6 102247091 102248039 -80167203 + L1MA5 LINE L1 5299 6278 -22 22 0 0 0 chr6 102248040 102248062 -80167180 + AT_rich Low_complexity Low_complexity 1 22 0 41 58 0 0 chr6 102248490 102248559 -80166683 + AT_rich Low_complexity Low_complexity 1 69 0 24 32 0 0 chr6 102248624 102248655 -80166587 + AT_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chr6 102250136 102250177 -80165065 + AT_rich Low_complexity Low_complexity 1 41 0 2200 82 26 3 chr6 102250274 102250577 -80164665 - AluY SINE Alu -1 310 1 1371 203 49 21 chr6 102250688 102251013 -80164229 + L1MC3 LINE L1 7135 7468 -317 195 129 0 0 chr6 102251358 102251389 -80163853 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 258 297 169 14 chr6 102253131 102253279 -80161963 + MLT1J LTR MaLR 335 505 -6 21 36 0 0 chr6 102253643 102253671 -80161571 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr6 102253683 102253723 -80161519 + AT_rich Low_complexity Low_complexity 1 40 0 26 82 0 0 chr6 102253798 102253859 -80161383 + AT_rich Low_complexity Low_complexity 1 61 0 440 234 23 105 chr6 102253979 102254150 -80161092 - MER63 DNA MER1_type -53 783 1 766 187 0 0 chr6 102255629 102255768 -80159474 + FLAM_C SINE Alu 1 139 -4 701 300 142 28 chr6 102257695 102258018 -80157224 + L2 LINE L2 2535 2894 -420 410 321 33 28 chr6 102258133 102258345 -80156897 + L2 LINE L2 3101 3313 0 26 0 0 0 chr6 102258671 102258697 -80156545 + AT_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr6 102261057 102261117 -80154125 + AT_rich Low_complexity Low_complexity 1 60 0 748 169 0 29 chr6 102261117 102261253 -80153989 - FLAM_C SINE Alu -11 132 1 1752 234 16 6 chr6 102261961 102262324 -80152918 + MLT1A2 LTR MaLR 8 374 0 1216 234 23 0 chr6 102263758 102264014 -80151228 + MLT1A1 LTR MaLR 1 262 -103 562 263 29 0 chr6 102264028 102264199 -80151043 + L1M4 LINE L1 3353 3528 -2618 3324 224 24 32 chr6 102264204 102264990 -80150252 + L1 LINE L1 21 800 -6765 1290 168 22 0 chr6 102264991 102265259 -80149983 + L1 LINE L1 5650 5923 -1642 26 0 0 0 chr6 102266172 102266198 -80149044 + AT_rich Low_complexity Low_complexity 1 26 0 250 259 0 0 chr6 102267617 102267628 -80147614 + MER3 DNA MER1_type 37 47 -162 516 220 9 0 chr6 102267628 102267737 -80147505 - MER3 DNA MER1_type 0 209 100 751 194 174 58 chr6 102267758 102268016 -80147226 - L1MA5A LINE L1 -5 6292 6005 307 189 100 22 chr6 102268038 102268128 -80147114 - MER3 DNA MER1_type -108 101 5 765 167 7 7 chr6 102268224 102268362 -80146880 - L1MA5A LINE L1 -360 5952 5815 204 40 0 0 chr6 102268363 102268388 -80146854 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1329 148 61 75 chr6 102268427 102268786 -80146456 + L1MA9 LINE L1 5957 6310 -2 191 291 0 18 chr6 102269229 102269284 -80145958 + MIR SINE MIR 13 66 -196 282 342 81 34 chr6 102269707 102269941 -80145301 + L3 LINE CR1 324 568 -1009 325 320 180 60 chr6 102270071 102270288 -80144954 + L3 LINE CR1 610 800 -777 1317 197 19 0 chr6 102270288 102270547 -80144695 + L1PB4 LINE L1 5880 6143 -13 325 320 180 60 chr6 102270547 102271045 -80144197 + L3 LINE CR1 800 1411 -166 319 226 16 73 chr6 102272796 102272880 -80142362 - LTR41 LTR ERVL -6 767 691 1999 243 64 8 chr6 102272880 102273412 -80141830 + MER68 LTR ERV1 1 562 0 319 226 16 73 chr6 102273412 102273451 -80141791 - LTR41 LTR ERVL -82 691 651 469 262 65 39 chr6 102273958 102274164 -80141078 - LTR41 LTR ERVL -557 238 4 265 266 75 11 chr6 102276606 102276700 -80138542 + MER94 DNA DNA 1 100 -34 242 220 0 0 chr6 102277896 102277955 -80137287 + (TA)n Simple_repeat Simple_repeat 1 59 0 1192 230 150 0 chr6 102277955 102278305 -80136937 - MLT2B2 LTR ERVL -64 456 6 419 291 74 40 chr6 102280372 102280547 -80134695 + MIR SINE MIR 25 205 -57 187 271 56 47 chr6 102280543 102280650 -80134592 - MIR SINE MIR -1 261 154 * 224 283 17 17 chr6 102280708 102280768 -80134474 + L2 LINE L2 2230 2289 -1025 355 340 76 70 chr6 102280867 102281352 -80133890 + L2 LINE L2 2490 2977 -337 204 278 120 28 chr6 102281463 102281571 -80133671 + L2 LINE L2 3187 3304 -9 457 313 84 6 chr6 102281921 102282100 -80133142 - MIR SINE MIR -56 206 14 2057 165 29 8 chr6 102282469 102282851 -80132391 - MLT1B LTR MaLR 0 390 1 207 0 0 0 chr6 102283166 102283189 -80132053 + (T)n Simple_repeat Simple_repeat 1 23 0 421 306 78 67 chr6 102283242 102283628 -80131614 + MLT1L LTR MaLR 1 390 -225 1252 242 40 30 chr6 102283703 102283800 -80131442 + MLT1C LTR MaLR 67 162 -305 302 0 26 0 chr6 102283800 102283838 -80131404 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2016 111 0 0 chr6 102283838 102284117 -80131125 - AluY SINE Alu -32 279 1 1252 242 40 30 chr6 102284117 102284415 -80130827 + MLT1C LTR MaLR 161 467 0 236 289 186 26 chr6 102286316 102286472 -80128770 - L3 LINE CR1 -244 1333 1153 1716 254 39 26 chr6 102286901 102287548 -80127694 - L1M4 LINE L1 -1632 4514 3860 1773 254 46 4 chr6 102287600 102288077 -80127165 + MLT1D-int LTR MaLR 6 502 -869 1171 226 44 109 chr6 102288071 102288456 -80126786 + MLT1D-int LTR MaLR 978 1337 -34 * 474 182 11 11 chr6 102288486 102288574 -80126668 + MLT1D LTR MaLR 3 90 -415 405 306 21 0 chr6 102288576 102288720 -80126522 - L1M4 LINE L1 -2278 3868 3722 216 182 45 0 chr6 102289753 102289819 -80125423 + (TA)n Simple_repeat Simple_repeat 2 70 0 321 333 83 0 chr6 102289947 102290067 -80125175 - L2 LINE L2 -2 3270 3141 315 319 31 58 chr6 102290276 102290467 -80124775 - LTR16C LTR ERVL -3 488 303 221 310 234 19 chr6 102291745 102292061 -80123181 - L2 LINE L2 -1325 1989 1606 237 111 0 0 chr6 102292132 102292222 -80123020 + Alu SINE Alu 247 336 0 180 229 0 0 chr6 102292636 102292671 -80122571 + L2 LINE L2 3269 3303 -10 329 299 58 32 chr6 102294349 102294503 -80120739 + Charlie8 DNA MER1_type 1 158 -2259 283 342 34 26 chr6 102294613 102294730 -80120512 + MIR SINE MIR 51 168 -94 21 57 0 0 chr6 102295228 102295263 -80119979 + AT_rich Low_complexity Low_complexity 1 35 0 2164 120 0 3 chr6 102295829 102296137 -80119105 - AluSq SINE Alu -2 311 5 1920 241 74 34 chr6 102296258 102296813 -80118429 + L1M2b LINE L1 13 589 -6620 8928 223 35 13 chr6 102296982 102300798 -80114444 + L1M2b LINE L1 1726 5626 -1582 252 0 0 0 chr6 102301179 102301207 -80114035 + (T)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr6 102301945 102301972 -80113270 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 359 225 99 18 chr6 102302397 102302508 -80112734 - L2 LINE L2 0 3313 3194 23 0 0 0 chr6 102303220 102303243 -80111999 + AT_rich Low_complexity Low_complexity 1 23 0 398 322 39 30 chr6 102303337 102303567 -80111675 - L1M4 LINE L1 -1542 4604 4373 802 216 30 30 chr6 102303893 102304092 -80111150 - MER3 DNA MER1_type -4 205 7 407 212 162 0 chr6 102304157 102304256 -80110986 + MLT2B3 LTR ERVL 1 115 -405 1733 276 14 14 chr6 102304311 102304727 -80110515 + MLT2B3 LTR ERVL 101 516 -38 200 188 21 21 chr6 102304739 102304787 -80110455 + (TTA)n Simple_repeat Simple_repeat 2 49 0 319 119 45 30 chr6 102304796 102304863 -80110379 + MLT1E1 LTR MaLR 587 654 0 1113 273 92 21 chr6 102305569 102306002 -80109240 - MLT1C LTR MaLR 0 467 4 1221 106 5 40 chr6 102306155 102306354 -80108888 - L1PB1 LINE L1 -1 6150 5959 506 46 0 0 chr6 102306354 102306419 -80108823 - AluY SINE Alu -13 299 235 1136 134 13 1 chr6 102306421 102306606 -80108636 - L1PB1 LINE L1 -181 5970 5784 265 130 7 68 chr6 102306617 102306763 -80108479 + (TA)n Simple_repeat Simple_repeat 1 137 0 697 133 74 0 chr6 102306784 102306919 -80108323 - L1PB1 LINE L1 -350 5801 5657 6087 160 18 32 chr6 102307180 102307907 -80107335 - L1PB1 LINE L1 -2 6149 5413 1944 102 0 0 chr6 102307907 102308162 -80107080 - AluY SINE Alu -4 307 53 6087 160 18 32 chr6 102308162 102309607 -80105635 - L1PB1 LINE L1 -738 5413 4006 7322 155 29 5 chr6 102310172 102311433 -80103809 - HSMAR2 DNA Mariner -10 1292 2 868 324 82 3 chr6 102311563 102311943 -80103299 + HAL1 LINE L1 459 868 -1639 284 284 14 93 chr6 102312345 102312415 -80102827 + HAL1 LINE L1 976 1050 -1457 1640 168 3 42 chr6 102312415 102312548 -80102694 + AluSx SINE Alu 1 138 -185 2155 116 0 0 chr6 102312548 102312841 -80102401 + AluSg SINE Alu 2 294 -16 1640 168 3 42 chr6 102312841 102313042 -80102200 + AluSx SINE Alu 138 323 0 284 284 14 93 chr6 102313042 102313183 -80102059 + HAL1 LINE L1 1050 1173 -1334 210 154 0 0 chr6 102313934 102313973 -80101269 + A-rich Low_complexity Low_complexity 1 39 0 275 294 66 66 chr6 102316104 102316240 -80099002 + L2 LINE L2 3137 3272 0 14064 190 42 6 chr6 102316373 102319018 -80096224 + L1MA2 LINE L1 19 2759 -4806 2063 102 26 41 chr6 102319022 102319366 -80095876 - L1M1 LINE L1 -4463 3102 2764 * 5638 159 10 9 chr6 102319358 102320377 -80094865 + L1MA2 LINE L1 6704 7723 0 183 80 0 0 chr6 102320763 102320788 -80094454 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr6 102321125 102321153 -80094089 + AT_rich Low_complexity Low_complexity 1 28 0 444 19 0 0 chr6 102321247 102321300 -80093942 + (TG)n Simple_repeat Simple_repeat 2 54 0 915 282 75 20 chr6 102322786 102323425 -80091817 - L1M4 LINE L1 -2452 4192 3519 365 197 0 0 chr6 102323435 102323501 -80091741 - MER1B DNA MER1_type 0 339 274 1706 169 67 14 chr6 102323501 102323857 -80091385 + THE1C LTR MaLR 1 375 0 8902 143 34 38 chr6 102323859 102325443 -80089799 + THE1C-int LTR MaLR 3 1580 0 1454 146 122 12 chr6 102325453 102325766 -80089476 + THE1C LTR MaLR 3 367 -8 1459 220 27 0 chr6 102325769 102326028 -80089214 - MER1B DNA MER1_type -73 266 1 917 297 9 0 chr6 102326031 102326358 -80088884 - L1M4 LINE L1 -3131 3513 3184 2629 210 128 11 chr6 102326442 102327146 -80088096 - LTR48 LTR ERV1 0 787 2 372 320 58 40 chr6 102327148 102327426 -80087816 - L1M4 LINE L1 -4149 2497 2215 1779 289 46 25 chr6 102327451 102328320 -80086922 - L1M4 LINE L1 -4553 2093 1207 322 239 0 0 chr6 102328374 102328445 -80086797 - L1M4 LINE L1 -5344 1198 1128 396 194 24 16 chr6 102328454 102328578 -80086664 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 5111 136 32 15 chr6 102328580 102329458 -80085784 - L1PB3 LINE L1 -7 6147 5255 3688 245 40 33 chr6 102329491 102330570 -80084672 - L1M4 LINE L1 -5437 1105 20 345 247 84 39 chr6 102330576 102330730 -80084512 - L1MC4a LINE L1 -501 7307 7147 * 465 235 0 0 chr6 102330726 102330828 -80084414 - L1MC4 LINE L1 -985 7057 6956 200 143 24 0 chr6 102332036 102332078 -80083164 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr6 102335267 102335302 -80079940 + AT_rich Low_complexity Low_complexity 1 35 0 918 293 76 22 chr6 102335919 102336288 -80078954 - MLT1I LTR MaLR -17 392 4 186 43 0 0 chr6 102336902 102336925 -80078317 + (GAA)n Simple_repeat Simple_repeat 2 24 0 203 224 0 53 chr6 102339048 102339124 -80076118 + (CATTA)n Simple_repeat Simple_repeat 4 75 0 505 28 28 0 chr6 102339750 102339821 -80075421 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 1952 104 53 7 chr6 102339926 102340225 -80075017 + AluSp SINE Alu 1 313 0 354 107 0 0 chr6 102342333 102342389 -80072853 + (CA)n Simple_repeat Simple_repeat 1 56 0 29 0 0 0 chr6 102343905 102343934 -80071308 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr6 102344552 102344594 -80070648 + AT_rich Low_complexity Low_complexity 1 42 0 475 173 67 207 chr6 102345839 102346033 -80069209 + HsTC2 DNA Tc2 1288 1507 -391 545 64 26 0 chr6 102346033 102346111 -80069131 + L1PA5 LINE L1 6075 6154 0 475 173 67 207 chr6 102346111 102346252 -80068990 + HsTC2 DNA Tc2 1507 1749 -149 1278 236 20 10 chr6 102346252 102346544 -80068698 + AluJb SINE Alu 1 295 -7 475 173 67 207 chr6 102346544 102346565 -80068677 + HsTC2 DNA Tc2 1749 1771 -127 402 155 155 10 chr6 102346640 102346737 -80068505 + HsTC2 DNA Tc2 1780 1890 -8 27 49 0 0 chr6 102348151 102348192 -80067050 + AT_rich Low_complexity Low_complexity 1 41 0 690 185 0 30 chr6 102348210 102348345 -80066897 + MIR SINE MIR 88 218 -44 181 367 156 31 chr6 102348592 102348848 -80066394 + L3 LINE CR1 1249 1536 -41 22 70 0 0 chr6 102350841 102350884 -80064358 + AT_rich Low_complexity Low_complexity 1 43 0 62 68 0 0 chr6 102350974 102351092 -80064150 + AT_rich Low_complexity Low_complexity 1 118 0 1081 235 48 59 chr6 102351187 102351579 -80063663 + MLT1B LTR MaLR 3 390 0 521 288 99 25 chr6 102351827 102352297 -80062945 - L1ME3 LINE L1 -278 5884 5459 288 0 0 0 chr6 102354707 102354739 -80060503 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 368 299 32 25 chr6 102355162 102355319 -80059923 - MIR SINE MIR -52 210 53 22 56 0 0 chr6 102355617 102355653 -80059589 + AT_rich Low_complexity Low_complexity 1 36 0 306 0 0 0 chr6 102356025 102356059 -80059183 + (TA)n Simple_repeat Simple_repeat 2 35 0 216 86 0 0 chr6 102356060 102356095 -80059147 + (TC)n Simple_repeat Simple_repeat 2 36 0 309 307 121 33 chr6 102358971 102359186 -80056056 - L1ME4a LINE L1 -169 5952 5719 21 36 0 0 chr6 102359563 102359591 -80055651 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr6 102360023 102360070 -80055172 + AT_rich Low_complexity Low_complexity 1 47 0 246 288 129 36 chr6 102361086 102361225 -80054017 + MER5B DNA MER1_type 26 177 -1 358 205 51 0 chr6 102361510 102361588 -80053654 + L1MD2 LINE L1 6135 6216 -143 249 83 167 17 chr6 102361594 102361654 -80053588 + L1MD1 LINE L1 6172 6240 -2 353 294 91 53 chr6 102363433 102363773 -80051469 + L1M4 LINE L1 2670 3022 -3124 227 291 22 112 chr6 102365136 102365270 -80049972 - MER5B DNA MER1_type -51 127 6 697 151 0 17 chr6 102365608 102365727 -80049515 + FLAM_C SINE Alu 3 119 -24 307 299 102 29 chr6 102365763 102365900 -80049342 + HAL1 LINE L1 1174 1320 -1187 21 0 0 0 chr6 102366133 102366154 -80049088 + AT_rich Low_complexity Low_complexity 1 21 0 180 125 0 0 chr6 102366426 102366458 -80048784 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr6 102367073 102367094 -80048148 + AT_rich Low_complexity Low_complexity 1 21 0 195 129 0 0 chr6 102368769 102368800 -80046442 + (A)n Simple_repeat Simple_repeat 1 31 0 208 196 29 118 chr6 102368800 102368902 -80046340 + MIR SINE MIR 115 207 -55 284 297 130 36 chr6 102369095 102369287 -80045955 + L2 LINE L2 3104 3313 0 2485 66 0 0 chr6 102369670 102369975 -80045267 - AluY SINE Alu -6 305 1 275 261 144 0 chr6 102370374 102370485 -80044757 + MER63 DNA MER1_type 1 753 -83 387 0 0 0 chr6 102371194 102371237 -80044005 + (CA)n Simple_repeat Simple_repeat 2 44 0 228 323 0 0 chr6 102372342 102372407 -80042835 - L2 LINE L2 -86 3227 3163 14348 150 34 47 chr6 102373110 102375841 -80039401 + Tigger2 DNA MER2_type 23 2718 0 252 398 60 28 chr6 102376642 102376858 -80038384 + L2 LINE L2 2262 2484 -830 22 0 0 0 chr6 102378145 102378167 -80037075 + AT_rich Low_complexity Low_complexity 1 22 0 1044 237 51 110 chr6 102378757 102379145 -80036097 + MLT2B1 LTR ERVL 1 460 -60 16695 199 66 40 chr6 102379224 102379338 -80035904 + ERVL-B1 LTR ERVL 2 112 -5652 2369 66 0 0 chr6 102379338 102379626 -80035616 + AluY SINE Alu 11 298 -13 16695 199 66 40 chr6 102379626 102381637 -80033605 + ERVL-B1 LTR ERVL 112 2267 -3497 189 0 0 0 chr6 102381637 102381658 -80033584 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 16695 199 66 40 chr6 102381658 102383309 -80031933 + ERVL-B1 LTR ERVL 2267 3875 -1889 189 0 0 0 chr6 102383320 102383341 -80031901 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 24 53 0 0 chr6 102383401 102383439 -80031803 + AT_rich Low_complexity Low_complexity 1 38 0 23 68 0 0 chr6 102383503 102383547 -80031695 + AT_rich Low_complexity Low_complexity 1 44 0 216 323 62 10 chr6 102383627 102383723 -80031519 - MER5A DNA MER1_type -1 188 88 * 477 161 161 95 chr6 102383650 102383742 -80031500 + MER5A DNA MER1_type 39 144 -45 1701 139 45 21 chr6 102383742 102384030 -80031212 + AluSx SINE Alu 1 295 -17 477 161 161 95 chr6 102384030 102384074 -80031168 + MER5A DNA MER1_type 144 184 -5 290 281 121 65 chr6 102384084 102384453 -80030789 - LTR16A1 LTR ERVL -33 424 15 31 0 0 0 chr6 102384708 102384739 -80030503 + AT_rich Low_complexity Low_complexity 1 31 0 317 228 76 86 chr6 102385918 102386240 -80029002 + LTR16A1 LTR ERVL 94 455 -2 596 318 71 8 chr6 102386249 102386516 -80028726 + HERV16 LTR ERVL 8 291 -4705 364 294 57 34 chr6 102386889 102387066 -80028176 - MIR SINE MIR -48 214 34 359 258 67 45 chr6 102387949 102388127 -80027115 - MIR SINE MIR -48 214 33 415 307 8 16 chr6 102388231 102388358 -80026884 + MER94 DNA DNA 4 129 -5 203 304 47 0 chr6 102388816 102388888 -80026354 + MIR SINE MIR 69 144 -64 347 319 63 34 chr6 102389124 102389362 -80025880 - LTR16B LTR ERVL -124 340 96 471 304 44 69 chr6 102389405 102389839 -80025403 - HERV16 LTR ERVL -19 4977 4555 600 375 40 11 chr6 102390213 102390565 -80024677 - HERV16 LTR ERVL -1151 4613 4252 251 301 24 0 chr6 102391057 102391140 -80024102 - HERV16 LTR ERVL -4331 665 581 8586 108 30 11 chr6 102391263 102392519 -80022723 - HSMAR1 DNA Mariner -1 1286 7 216 215 11 43 chr6 102392519 102392612 -80022630 + (TA)n Simple_repeat Simple_repeat 1 90 0 483 335 37 39 chr6 102392672 102393027 -80022215 - LTR16B LTR ERVL -108 356 3 2032 158 111 5 chr6 102393186 102393573 -80021669 + MSTA LTR MaLR 1 428 0 294 254 21 0 chr6 102393790 102393932 -80021310 + (TA)n Simple_repeat Simple_repeat 2 146 0 208 263 0 18 chr6 102393936 102393993 -80021249 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 210 118 0 0 chr6 102393995 102394029 -80021213 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr6 102394701 102394729 -80020513 + AT_rich Low_complexity Low_complexity 1 28 0 206 375 50 12 chr6 102394983 102395063 -80020179 + L2 LINE L2 3140 3222 -50 460 266 77 0 chr6 102396375 102396420 -80018822 - L1MA10 LINE L1 -8 6326 6282 5934 258 69 33 chr6 102396420 102399711 -80015531 - L1ME1 LINE L1 -44 6122 2716 517 259 88 61 chr6 102400573 102401088 -80014154 + L1ME LINE L1 531 1107 -5007 677 262 183 33 chr6 102401116 102401733 -80013509 + L1ME LINE L1 1180 1939 -4322 721 315 15 29 chr6 102401736 102402076 -80013166 + L1ME2 LINE L1 5821 6155 -9 23 33 0 0 chr6 102402219 102402249 -80012993 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr6 102403118 102403162 -80012080 + AT_rich Low_complexity Low_complexity 1 44 0 612 235 53 0 chr6 102403810 102403997 -80011245 - Charlie5 DNA MER1_type 0 2624 2428 491 268 77 11 chr6 102404020 102404203 -80011039 + LTR33A LTR ERVL 327 521 -2 505 209 0 0 chr6 102404275 102404380 -80010862 - MER53 DNA DNA -84 105 1 736 0 0 0 chr6 102404790 102404877 -80010365 + L1PA2 LINE L1 6068 6154 -1 785 287 157 37 chr6 102405849 102406225 -80009017 - LTR16A LTR ERVL -6 444 24 201 298 0 0 chr6 102407163 102407210 -80008032 - MIR SINE MIR -123 85 39 25 51 0 0 chr6 102408178 102408217 -80007025 + AT_rich Low_complexity Low_complexity 1 39 0 229 324 141 14 chr6 102408800 102409013 -80006229 + MIR SINE MIR 23 262 0 25 75 0 0 chr6 102409366 102409419 -80005823 + AT_rich Low_complexity Low_complexity 1 53 0 567 81 0 0 chr6 102410876 102410977 -80004265 + L1PA7 LINE L1 6068 6168 0 180 152 0 0 chr6 102411427 102411460 -80003782 + (TTA)n Simple_repeat Simple_repeat 2 34 0 34 55 0 0 chr6 102412736 102412791 -80002451 + AT_rich Low_complexity Low_complexity 1 55 0 2189 109 13 0 chr6 102413356 102413658 -80001584 - AluSc SINE Alu -3 306 1 27 49 0 0 chr6 102413802 102413843 -80001399 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr6 102415510 102415535 -79999707 + AT_rich Low_complexity Low_complexity 1 25 0 1194 210 110 57 chr6 102417010 102417382 -79997860 + MSTD LTR MaLR 1 392 -4 307 270 27 47 chr6 102417571 102417719 -79997523 + L1ME3A LINE L1 6020 6164 -6 357 274 95 46 chr6 102418028 102418313 -79996929 - L1M4 LINE L1 -3261 3383 3085 749 214 81 6 chr6 102418722 102418895 -79996347 - MER20 DNA MER1_type 0 219 34 2135 103 0 14 chr6 102418976 102419297 -79995945 + AluSq SINE Alu 1 317 0 372 429 31 0 chr6 102419734 102419925 -79995317 - MLT1K LTR MaLR -326 262 66 38 51 0 0 chr6 102420061 102420120 -79995122 + AT_rich Low_complexity Low_complexity 1 59 0 24 67 0 0 chr6 102420204 102420249 -79994993 + AT_rich Low_complexity Low_complexity 1 45 0 1398 194 16 40 chr6 102420502 102420806 -79994436 - AluJo SINE Alu -15 297 1 279 157 0 0 chr6 102421345 102421396 -79993846 + (TG)n Simple_repeat Simple_repeat 1 51 0 23 0 0 0 chr6 102422564 102422587 -79992655 + AT_rich Low_complexity Low_complexity 1 23 0 2323 53 0 4 chr6 102422647 102422928 -79992314 - AluY SINE Alu -11 300 21 203 189 0 0 chr6 102423432 102423469 -79991773 + A-rich Low_complexity Low_complexity 1 37 0 3456 223 49 11 chr6 102424571 102425628 -79989614 - L1MB7 LINE L1 -19 6165 5068 701 272 35 0 chr6 102425632 102425860 -79989382 - MER34 LTR ERV1 -303 239 4 2675 181 73 2 chr6 102425900 102426447 -79988795 + L1 LINE L1 3623 4208 -1938 2383 229 84 90 chr6 102426446 102427069 -79988173 - L1M4 LINE L1 -5437 1105 480 * 1087 155 0 0 chr6 102427069 102427250 -79987992 - L1MA3 LINE L1 0 6305 6125 2383 229 84 90 chr6 102427250 102427330 -79987912 - L1M4 LINE L1 -6062 480 401 351 0 0 0 chr6 102427330 102427369 -79987873 + (TG)n Simple_repeat Simple_repeat 2 40 0 185 0 40 0 chr6 102427368 102427393 -79987849 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 2383 229 84 90 chr6 102427369 102427748 -79987494 - L1M4 LINE L1 -6141 401 52 23 54 0 0 chr6 102429023 102429060 -79986182 + AT_rich Low_complexity Low_complexity 1 37 0 588 121 0 0 chr6 102430560 102430651 -79984591 + (GGAA)n Simple_repeat Simple_repeat 1 91 0 25 31 0 0 chr6 102431428 102431460 -79983782 + AT_rich Low_complexity Low_complexity 1 32 0 2137 136 3 0 chr6 102431870 102432180 -79983062 + AluSx SINE Alu 2 312 0 381 245 66 40 chr6 102432283 102432434 -79982808 + L2 LINE L2 3159 3313 0 23 0 0 0 chr6 102433380 102433403 -79981839 + AT_rich Low_complexity Low_complexity 1 23 0 234 348 131 36 chr6 102433664 102434107 -79981135 - L2 LINE L2 -547 2767 2283 271 226 0 0 chr6 102434152 102434214 -79981028 - L1M4 LINE L1 -3450 2696 2635 422 311 54 0 chr6 102434456 102434678 -79980564 - L1M4 LINE L1 -2630 3516 3283 312 274 104 0 chr6 102434701 102434807 -79980435 + MER94 DNA DNA 12 128 -6 29 60 0 0 chr6 102434893 102434943 -79980299 + AT_rich Low_complexity Low_complexity 1 50 0 2930 162 11 8 chr6 102435568 102436092 -79979150 + L1PA13 LINE L1 5638 6163 0 1552 177 61 0 chr6 102436103 102436397 -79978845 + L1PA16 LINE L1 5855 6166 0 222 264 194 23 chr6 102436422 102436551 -79978691 - L2 LINE L2 -81 3232 3082 297 299 15 52 chr6 102437062 102437196 -79978046 + MLT2F LTR ERVL 13 141 -522 671 220 33 33 chr6 102437233 102437415 -79977827 + MLT1E3 LTR MaLR 49 230 -394 504 281 82 67 chr6 102437250 102437581 -79977661 + MLT2C1 LTR ERVL 44 379 -18 * 368 241 0 3 chr6 102437787 102437903 -79977339 + L1PA14 LINE L1 5928 6041 -133 1054 270 73 40 chr6 102438018 102438444 -79976798 - MLT1D LTR MaLR -44 461 22 1911 131 9 41 chr6 102439189 102439509 -79975733 + AluSx SINE Alu 1 310 -2 567 274 26 13 chr6 102441242 102441395 -79973847 + MIR SINE MIR 6 160 -102 881 207 156 60 chr6 102441889 102442222 -79973020 + MLT1A1 LTR MaLR 1 365 0 4984 188 22 13 chr6 102442627 102443151 -79972091 + L1MA4 LINE L1 5064 5582 -718 180 0 0 0 chr6 102443151 102443171 -79972071 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4984 188 22 13 chr6 102443171 102443862 -79971380 + L1MA4 LINE L1 5582 6294 -6 778 329 52 36 chr6 102443892 102444336 -79970906 - L2 LINE L2 -639 2675 2225 270 316 0 13 chr6 102444339 102444415 -79970827 - L2 LINE L2 -16 3297 3223 824 271 189 12 chr6 102444415 102444545 -79970697 + MLT1E LTR MaLR 1 107 -486 1630 138 125 20 chr6 102444545 102444850 -79970392 - MER1B DNA MER1_type 0 337 1 824 271 189 12 chr6 102444850 102445269 -79969973 + MLT1E LTR MaLR 107 590 -3 528 287 60 9 chr6 102446830 102447046 -79968196 + Tigger6 DNA MER2_type 1068 1294 -303 378 338 68 43 chr6 102447086 102447456 -79967786 + L1PA16 LINE L1 1 379 -7202 9128 236 31 40 chr6 102448199 102449614 -79965628 + L1PA16 LINE L1 2182 3607 -3982 2707 162 53 0 chr6 102449614 102450101 -79965141 - MER75 DNA T2_type 0 514 2 9128 236 31 40 chr6 102450101 102451675 -79963567 + L1PA16 LINE L1 3607 5193 -2396 2074 141 21 24 chr6 102451675 102452051 -79963191 - THE1C LTR MaLR 0 375 1 9128 236 31 40 chr6 102452051 102453485 -79961757 + L1PA16 LINE L1 5193 6637 -952 189 0 0 0 chr6 102453485 102453506 -79961736 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 9128 236 31 40 chr6 102453506 102453965 -79961277 + L1PA16 LINE L1 6637 7015 -574 1995 116 0 4 chr6 102453965 102454232 -79961010 - AluSx SINE Alu -44 268 3 9128 236 31 40 chr6 102454232 102454460 -79960782 + L1PA16 LINE L1 7015 7243 -346 1342 65 8 266 chr6 102454463 102454846 -79960396 + LTR12 LTR ERV1 1 284 -430 226 292 34 0 chr6 102454847 102454936 -79960306 + LTR30 LTR ERV1 552 643 -79 652 144 0 0 chr6 102454938 102455035 -79960207 + LTR12 LTR ERV1 615 711 -3 1776 189 29 0 chr6 102455035 102455379 -79959863 + L1PA16 LINE L1 7242 7595 -9 871 223 45 23 chr6 102455408 102455673 -79959569 + Tigger6 DNA MER2_type 1327 1597 0 25 0 0 0 chr6 102455783 102455808 -79959434 + AT_rich Low_complexity Low_complexity 1 25 0 2102 126 0 3 chr6 102455965 102456259 -79958983 + AluSc SINE Alu 1 293 -16 2223 105 3 10 chr6 102456589 102456902 -79958340 - AluSx SINE Alu -1 311 1 1640 123 20 0 chr6 102457701 102457953 -79957289 - L1PA13 LINE L1 0 6163 5907 24 32 0 0 chr6 102458583 102458614 -79956628 + AT_rich Low_complexity Low_complexity 1 31 0 239 246 62 0 chr6 102458834 102458899 -79956343 - L1ME LINE L1 -451 5670 5602 865 300 113 39 chr6 102459056 102459747 -79955495 + L1M4 LINE L1 74 815 -5727 180 111 0 0 chr6 102459758 102459785 -79955457 + (T)n Simple_repeat Simple_repeat 1 27 0 249 265 93 20 chr6 102462161 102462312 -79952930 + L1ME LINE L1 5718 5879 -242 1137 132 79 0 chr6 102462407 102462596 -79952646 - L1MA3 LINE L1 -15 6290 6087 315 316 37 15 chr6 102462770 102462906 -79952336 - L2 LINE L2 -4 3309 3171 302 346 70 67 chr6 102463074 102463476 -79951766 - L2 LINE L2 -1653 1661 1259 2124 176 41 7 chr6 102465460 102465691 -79949551 - MSTA LTR MaLR 0 428 175 1575 89 0 5 chr6 102465691 102465893 -79949349 - AluY SINE Alu -11 300 100 2124 176 41 7 chr6 102465893 102466075 -79949167 - MSTA LTR MaLR -253 175 1 7900 192 46 11 chr6 102466075 102467671 -79947571 - MSTA-int LTR MaLR 0 1651 1 638 144 10 0 chr6 102467671 102467775 -79947467 - MSTA LTR MaLR 0 428 324 1496 164 8 80 chr6 102467775 102468147 -79947095 - MER4A LTR ERV1 0 664 261 617 108 0 11 chr6 102468153 102468246 -79946996 - MER4A LTR ERV1 -572 92 1 1688 165 48 9 chr6 102468246 102468561 -79946681 - MSTA LTR MaLR -101 327 1 246 136 0 0 chr6 102469373 102469417 -79945825 + (A)n Simple_repeat Simple_repeat 1 44 0 1259 212 29 68 chr6 102470705 102470926 -79944316 + AluJo SINE Alu 1 208 -94 226 0 59 0 chr6 102470926 102470960 -79944282 + (TA)n Simple_repeat Simple_repeat 2 37 0 1259 212 29 68 chr6 102470960 102471049 -79944193 + AluJo SINE Alu 208 299 -3 372 138 0 35 chr6 102471281 102471368 -79943874 + (GGAGA)n Simple_repeat Simple_repeat 5 88 0 3291 85 2 11 chr6 102472512 102472911 -79942331 + MLT2A1 LTR ERVL 1 397 -47 459 48 0 0 chr6 102472911 102472973 -79942269 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 3291 85 2 11 chr6 102472973 102473021 -79942221 + MLT2A1 LTR ERVL 397 444 0 2075 125 3 3 chr6 102473774 102474071 -79941171 + AluSc SINE Alu 1 297 -12 23 0 0 0 chr6 102474496 102474519 -79940723 + AT_rich Low_complexity Low_complexity 1 23 0 1439 196 43 4 chr6 102474519 102474795 -79940447 - AluJb SINE Alu -25 287 1 2301 68 0 0 chr6 102475178 102475478 -79939764 + AluY SINE Alu 1 300 0 22 0 0 0 chr6 102476038 102476060 -79939182 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr6 102476362 102476386 -79938856 + (T)n Simple_repeat Simple_repeat 1 24 0 216 62 42 21 chr6 102476627 102476675 -79938567 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 192 77 0 0 chr6 102477837 102477863 -79937379 + (TA)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr6 102478480 102478511 -79936731 + AT_rich Low_complexity Low_complexity 1 31 0 186 103 0 0 chr6 102479684 102479713 -79935529 + (T)n Simple_repeat Simple_repeat 1 29 0 43099 31 21 1 chr6 102479715 102485749 -79929493 - L1HS LINE L1 0 6155 1 433 308 71 62 chr6 102486503 102486811 -79928431 - L2 LINE L2 -1 3312 3002 * 440 336 210 36 chr6 102486808 102487337 -79927905 - L2 LINE L2 -429 2885 2265 294 270 36 45 chr6 102487489 102487600 -79927642 + LTR16C LTR ERVL 158 267 -224 2042 176 12 40 chr6 102487653 102488027 -79927215 + MLT2D LTR ERVL 1 363 -51 198 0 0 0 chr6 102488027 102488049 -79927193 + (TC)n Simple_repeat Simple_repeat 1 22 0 2042 176 12 40 chr6 102488049 102488100 -79927142 + MLT2D LTR ERVL 363 414 0 651 290 87 0 chr6 102488164 102488371 -79926871 + ERVL-D LTR ERVL 25 249 -5515 269 226 99 105 chr6 102488373 102488554 -79926688 + MIR SINE MIR 81 260 -2 34 0 0 0 chr6 102488629 102488663 -79926579 + AT_rich Low_complexity Low_complexity 1 34 0 184 240 0 40 chr6 102488727 102488777 -79926465 - L2 LINE L2 -95 3218 3171 714 113 40 0 chr6 102489164 102489315 -79925927 + (TA)n Simple_repeat Simple_repeat 2 158 0 1886 137 0 11 chr6 102489317 102489601 -79925641 - AluSx SINE Alu -31 281 1 29 28 0 0 chr6 102490872 102490908 -79924334 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr6 102491402 102491432 -79923810 + AT_rich Low_complexity Low_complexity 1 30 0 2100 123 0 10 chr6 102491433 102491733 -79923509 - AluSx SINE Alu -15 297 1 1500 183 72 3 chr6 102491964 102492084 -79923158 + AluJb SINE Alu 1 111 -201 378 0 0 0 chr6 102492084 102492126 -79923116 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1500 183 72 3 chr6 102492126 102492295 -79922947 + AluJb SINE Alu 111 310 -2 21 0 0 0 chr6 102492480 102492501 -79922741 + AT_rich Low_complexity Low_complexity 1 21 0 213 355 0 14 chr6 102492672 102492810 -79922432 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 1524 256 63 18 chr6 102492914 102493407 -79921835 + MER34 LTR ERV1 26 540 -2 418 310 14 7 chr6 102493855 102494000 -79921242 - MER69A DNA AcHobo -16 161 16 22 0 0 0 chr6 102494326 102494348 -79920894 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 102496939 102496969 -79918273 + AT_rich Low_complexity Low_complexity 1 30 0 1619 213 39 36 chr6 102497790 102498175 -79917067 - MER88 LTR ERVL 0 464 79 240 111 0 0 chr6 102498731 102498767 -79916475 + (CA)n Simple_repeat Simple_repeat 1 36 0 32 0 0 0 chr6 102498995 102499027 -79916215 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr6 102499469 102499492 -79915750 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 102500327 102500349 -79914893 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 102500729 102500750 -79914492 + AT_rich Low_complexity Low_complexity 1 21 0 204 318 0 0 chr6 102501305 102501368 -79913874 + (CA)n Simple_repeat Simple_repeat 2 64 0 186 43 0 0 chr6 102501411 102501434 -79913808 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 34 24 0 0 chr6 102501715 102501756 -79913486 + AT_rich Low_complexity Low_complexity 1 41 0 267 263 74 42 chr6 102502486 102502581 -79912661 + L2 LINE L2 3171 3268 -4 21 36 0 0 chr6 102502788 102502816 -79912426 + AT_rich Low_complexity Low_complexity 1 28 0 2367 278 91 20 chr6 102502934 102504253 -79910989 + L1MEc LINE L1 1081 2492 -3904 1304 167 4 9 chr6 102504278 102504511 -79910731 - L1PA13 LINE L1 0 6163 5932 3771 146 5 14 chr6 102504512 102505684 -79909558 - L1PA13 LINE L1 -325 5836 4675 * 5563 166 9 31 chr6 102505680 102505799 -79909443 + L1P LINE L1 3592 3712 -2434 198 0 0 0 chr6 102505799 102505821 -79909421 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 5563 166 9 31 chr6 102505821 102506800 -79908442 + L1P LINE L1 3712 4666 -1480 526 251 167 4 chr6 102506822 102507049 -79908193 + L1MEc LINE L1 2710 2973 -3242 760 299 84 46 chr6 102508209 102508577 -79906665 - MLT1I LTR MaLR 0 409 28 735 219 22 128 chr6 102508732 102508929 -79906313 - MIR SINE MIR -13 249 87 234 0 0 0 chr6 102508929 102508955 -79906287 + (TG)n Simple_repeat Simple_repeat 2 27 0 735 219 22 128 chr6 102508955 102509031 -79906211 - MIR SINE MIR -175 87 5 286 61 41 0 chr6 102509353 102509402 -79905840 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 205 149 43 0 chr6 102510065 102510112 -79905130 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 25 75 0 0 chr6 102510292 102510345 -79904897 + AT_rich Low_complexity Low_complexity 1 53 0 2208 114 0 10 chr6 102510999 102511298 -79903944 - AluSg SINE Alu -14 296 1 230 343 30 20 chr6 102513150 102513249 -79901993 - MIR SINE MIR -148 114 15 1938 117 4 4 chr6 102513904 102514220 -79901022 + AluSc SINE Alu 1 316 0 390 21 0 0 chr6 102514486 102514533 -79900709 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr6 102514638 102514662 -79900580 + AT_rich Low_complexity Low_complexity 1 24 0 197 439 39 0 chr6 102514749 102514879 -79900363 - L2 LINE L2 -4 3268 3134 208 395 16 0 chr6 102515205 102515334 -79899908 - L2 LINE L2 -587 2727 2597 3460 145 82 87 chr6 102515351 102516181 -79899061 + LTR1B LTR ERV1 1 826 0 491 169 0 0 chr6 102516338 102516421 -79898821 + L1MD1 LINE L1 36 118 -6422 227 250 0 0 chr6 102516419 102516471 -79898771 - L1MC/D LINE L1 -2064 5721 5670 * 3525 230 63 15 chr6 102516473 102518508 -79896734 + L1MD1 LINE L1 4503 6636 0 249 350 21 0 chr6 102518648 102518745 -79896497 - LTR16A LTR ERVL -2 448 350 340 238 56 71 chr6 102518765 102518891 -79896351 - LTR16A LTR ERVL -205 245 122 11920 110 25 17 chr6 102520089 102521996 -79893246 + L1PA7 LINE L1 4 1937 -4524 15589 108 15 5 chr6 102521998 102525168 -79890074 + L1PA7 LINE L1 3298 6469 0 24 53 0 0 chr6 102525181 102525219 -79890023 + AT_rich Low_complexity Low_complexity 1 38 0 25 65 0 0 chr6 102526126 102526172 -79889070 + AT_rich Low_complexity Low_complexity 1 46 0 3662 174 31 3 chr6 102526323 102527028 -79888214 - L1MC1 LINE L1 0 6333 5609 342 152 13 89 chr6 102527047 102527076 -79888166 - MLT1A1 LTR MaLR -292 73 43 1014 221 25 113 chr6 102527076 102527475 -79887767 - MLT1A1 LTR MaLR 0 365 2 342 152 13 89 chr6 102527475 102527524 -79887718 - MLT1A1 LTR MaLR -322 43 1 238 381 21 0 chr6 102529567 102529664 -79885578 + L2 LINE L2 2243 2341 -973 1966 224 3 0 chr6 102529796 102530180 -79885062 - MLT1B LTR MaLR -5 385 1 233 333 67 7 chr6 102530198 102530348 -79884894 + L2 LINE L2 2481 2639 -675 1592 261 83 57 chr6 102530407 102531069 -79884173 - MER76 LTR ERV -7 681 3 691 321 25 4 chr6 102531090 102531330 -79883912 + MIR SINE MIR 18 262 0 21 36 0 0 chr6 102531375 102531403 -79883839 + AT_rich Low_complexity Low_complexity 1 28 0 1347 301 113 6 chr6 102533513 102533984 -79881258 + MLT1G1 LTR MaLR 75 595 0 341 374 101 17 chr6 102534328 102534625 -79880617 + L2 LINE L2 2384 2705 -609 341 264 86 35 chr6 102534888 102535062 -79880180 + L2 LINE L2 3119 3301 -12 22 56 0 0 chr6 102535549 102535585 -79879657 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 102535918 102535946 -79879296 + AT_rich Low_complexity Low_complexity 1 28 0 460 287 77 92 chr6 102536309 102536570 -79878672 - MIR SINE MIR -4 258 2 340 315 44 88 chr6 102536614 102536887 -79878355 + MIR SINE MIR 2 262 0 245 341 11 23 chr6 102537278 102537366 -79877876 + MER91A DNA MER1_type 18 104 -92 304 353 82 12 chr6 102537934 102538104 -79877138 - L1MC/D LINE L1 -2206 5602 5421 450 257 132 27 chr6 102538310 102538541 -79876701 - L1ME3 LINE L1 -71 6099 5846 348 271 29 6 chr6 102539910 102540080 -79875162 + (TTTA)n Simple_repeat Simple_repeat 2 175 0 22 0 0 0 chr6 102540117 102540139 -79875103 + AT_rich Low_complexity Low_complexity 1 22 0 1663 216 97 31 chr6 102540467 102540953 -79874289 - MLT2B1 LTR ERVL -2 518 1 303 49 0 0 chr6 102541458 102541499 -79873743 + (CA)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr6 102541615 102541635 -79873607 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 346 287 0 0 chr6 102541635 102541722 -79873520 + CT-rich Low_complexity Low_complexity 2 88 0 242 359 78 0 chr6 102542304 102542433 -79872809 + MIR SINE MIR 40 179 -66 23 0 0 0 chr6 102544168 102544191 -79871051 + AT_rich Low_complexity Low_complexity 1 23 0 1500 106 148 4 chr6 102544661 102544897 -79870345 - THE1C LTR MaLR -105 270 1 8551 123 78 46 chr6 102544897 102545950 -79869292 - THE1C-int LTR MaLR 0 1580 461 2453 48 0 35 chr6 102545950 102546263 -79868979 - AluY SINE Alu -9 302 1 8551 123 78 46 chr6 102546263 102546740 -79868502 - THE1C-int LTR MaLR -1119 461 1 2367 151 0 5 chr6 102546740 102547117 -79868125 - THE1C LTR MaLR 0 375 1 4568 99 34 4 chr6 102547257 102547942 -79867300 + L1PA14 LINE L1 5456 6160 -1 227 267 178 22 chr6 102547977 102548112 -79867130 - L2 LINE L2 -661 2653 2498 500 291 62 53 chr6 102548544 102548788 -79866454 - MIR SINE MIR 0 262 17 1293 216 57 54 chr6 102550702 102551054 -79864188 + MLT1A2 LTR MaLR 4 356 -18 24 0 0 0 chr6 102551422 102551446 -79863796 + AT_rich Low_complexity Low_complexity 1 24 0 213 178 0 0 chr6 102552638 102552683 -79862559 + (TA)n Simple_repeat Simple_repeat 1 45 0 1795 141 0 11 chr6 102553239 102553515 -79861727 - AluSx SINE Alu -7 305 33 942 242 161 9 chr6 102553769 102554104 -79861138 + HAL1 LINE L1 11 396 -2111 988 298 80 8 chr6 102554181 102554543 -79860699 + LTR16A LTR ERVL 36 423 -27 1168 289 140 17 chr6 102554614 102555423 -79859819 + HAL1 LINE L1 467 1374 -1133 22 35 0 0 chr6 102555445 102555474 -79859768 + AT_rich Low_complexity Low_complexity 1 29 0 248 170 21 0 chr6 102555573 102555620 -79859622 + HAL1 LINE L1 1499 1546 -961 355 242 64 113 chr6 102555634 102556163 -79859079 + L1MC5 LINE L1 7405 7907 -54 259 311 14 54 chr6 102556207 102556355 -79858887 + HAL1 LINE L1 1660 1801 -706 243 175 0 0 chr6 102556408 102556465 -79858777 + (CA)n Simple_repeat Simple_repeat 2 58 0 279 306 70 94 chr6 102556990 102557445 -79857797 - LTR67 LTR ERVL 0 557 114 272 228 44 52 chr6 102557480 102557616 -79857626 + L1MC5 LINE L1 7411 7545 -416 232 164 30 0 chr6 102558425 102558492 -79856750 + (TA)n Simple_repeat Simple_repeat 1 69 0 21 36 0 0 chr6 102559696 102559724 -79855518 + AT_rich Low_complexity Low_complexity 1 28 0 288 53 0 0 chr6 102560403 102560441 -79854801 + (GA)n Simple_repeat Simple_repeat 2 39 0 267 150 0 0 chr6 102561153 102561213 -79854029 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 2021 182 59 5 chr6 102561345 102561751 -79853491 + MSTA LTR MaLR 1 428 0 207 162 0 0 chr6 102562905 102562942 -79852300 + (CA)n Simple_repeat Simple_repeat 2 38 0 231 276 102 55 chr6 102563113 102563240 -79852002 - MIR SINE MIR -113 149 17 1883 159 32 41 chr6 102563302 102563642 -79851600 - MER1B DNA MER1_type 0 337 1 23 33 0 0 chr6 102564341 102564371 -79850871 + AT_rich Low_complexity Low_complexity 1 30 0 1772 103 10 103 chr6 102564833 102565135 -79850107 + AluSg SINE Alu 2 275 -35 236 245 61 41 chr6 102565458 102565556 -79849686 - Charlie7 DNA MER1_type -2512 100 1 320 210 16 0 chr6 102566221 102566283 -79848959 - MER5A DNA MER1_type -118 71 9 993 212 23 46 chr6 102566898 102567115 -79848127 + MER58A DNA MER1_type 1 212 -12 24 32 0 0 chr6 102567132 102567163 -79848079 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr6 102567240 102567263 -79847979 + (T)n Simple_repeat Simple_repeat 1 23 0 2291 91 0 3 chr6 102567974 102568272 -79846970 + AluSq SINE Alu 2 298 -15 701 306 61 36 chr6 102568771 102569130 -79846112 + Charlie8 DNA MER1_type 87 454 -1963 246 240 32 120 chr6 102569420 102569520 -79845722 - MIR SINE MIR -46 162 69 220 268 0 18 chr6 102571342 102571398 -79843844 + MER5A DNA MER1_type 113 167 -22 616 192 51 0 chr6 102572415 102572592 -79842650 - L1MA7 LINE L1 -5 6286 6101 1617 169 124 17 chr6 102572593 102572676 -79842566 + L1MA7 LINE L1 5696 5769 -522 225 0 0 0 chr6 102572676 102572701 -79842541 + (CA)n Simple_repeat Simple_repeat 2 26 0 1617 169 124 17 chr6 102572701 102572973 -79842269 + L1MA7 LINE L1 5769 6089 -202 684 295 12 85 chr6 102572986 102573328 -79841914 + MLT2C1 LTR ERVL 1 317 -80 383 180 29 166 chr6 102573681 102573820 -79841422 + L1MD3 LINE L1 6836 7000 -853 286 225 40 22 chr6 102573828 102574111 -79841131 + L1MD3 LINE L1 7622 7944 -51 1586 219 104 39 chr6 102574111 102574554 -79840688 + MLT2B1 LTR ERVL 1 480 -40 314 23 0 23 chr6 102574554 102574598 -79840644 + (TG)n Simple_repeat Simple_repeat 2 44 0 1586 219 104 39 chr6 102574598 102574642 -79840600 + MLT2B1 LTR ERVL 480 520 0 286 225 40 22 chr6 102574642 102574685 -79840557 + L1MD3 LINE L1 7944 7985 -10 296 295 45 0 chr6 102575123 102575235 -79840007 + MER103 DNA DNA 8 124 -42 240 35 0 0 chr6 102576362 102576391 -79838851 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1338 269 85 42 chr6 102576729 102577689 -79837553 + L1ME LINE L1 924 1866 -4674 419 279 18 48 chr6 102577719 102577884 -79837358 + L1ME LINE L1 2357 2516 -4024 6674 152 20 18 chr6 102577894 102579115 -79836127 - Tigger3b DNA MER2_type -1 1230 7 557 171 41 18 chr6 102580228 102580398 -79834844 + GA-rich Low_complexity Low_complexity 2 175 0 1309 281 60 18 chr6 102580796 102581539 -79833703 + L1ME LINE L1 2392 3167 -3373 245 230 101 56 chr6 102581534 102581821 -79833421 + L1ME LINE L1 3552 3851 -2689 * 5547 225 89 3 chr6 102581819 102582996 -79832246 + L1M1 LINE L1 13 1290 -6275 1878 125 40 9 chr6 102582995 102583322 -79831920 + L1MA3 LINE L1 5924 6260 -45 * 488 168 11 0 chr6 102583321 102583416 -79831826 + L1PA16 LINE L1 5415 5510 -656 * 254 122 0 0 chr6 102583411 102583452 -79831790 - L1P LINE L1 -4125 2021 1981 * 5388 60 7 1 chr6 102583452 102584138 -79831104 + L1PA7 LINE L1 5463 6152 -2 2797 145 87 11 chr6 102584158 102584688 -79830554 + L1PA16 LINE L1 5597 6166 0 245 163 0 0 chr6 102584697 102584746 -79830496 + L1MA1 LINE L1 6244 6292 -10 554 276 110 17 chr6 102584766 102585056 -79830186 + L1ME1 LINE L1 3491 3807 -2339 2160 226 46 72 chr6 102585059 102585666 -79829576 + L1ME1 LINE L1 5318 5904 -262 2246 116 10 0 chr6 102585666 102585976 -79829266 - AluSq SINE Alu 0 313 1 2160 226 46 72 chr6 102585976 102586122 -79829120 + L1ME1 LINE L1 5904 6052 -114 2283 247 71 26 chr6 102586278 102586383 -79828859 + L1ME1 LINE L1 5325 5424 -742 3392 167 9 17 chr6 102586383 102587019 -79828223 + L1MC1 LINE L1 5703 6333 0 2283 247 71 26 chr6 102587019 102587714 -79827528 + L1ME1 LINE L1 5424 6161 -5 511 262 180 5 chr6 102588243 102588449 -79826793 - MIR SINE MIR 0 262 21 24 53 0 0 chr6 102589460 102589498 -79825744 + AT_rich Low_complexity Low_complexity 1 38 0 1726 166 27 0 chr6 102589511 102589807 -79825435 - AluSg SINE Alu -6 304 1 6377 65 5 1 chr6 102590078 102591443 -79823799 - L1PA5 LINE L1 -57 6097 4726 198 0 0 0 chr6 102591594 102591616 -79823626 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1491 176 3 40 chr6 102591620 102591916 -79823326 - AluJo SINE Alu -27 285 1 198 369 0 0 chr6 102592375 102592440 -79822802 + MIR3 SINE MIR 90 154 -54 23 0 0 0 chr6 102592557 102592580 -79822662 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr6 102592862 102592899 -79822343 + AT_rich Low_complexity Low_complexity 1 37 0 225 115 16 49 chr6 102593027 102593088 -79822154 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 1620 148 15 26 chr6 102593089 102593360 -79821882 - AluSx SINE Alu -19 293 26 2538 62 26 3 chr6 102593591 102593930 -79821312 + L1PA7 LINE L1 5794 6140 -14 2492 64 0 0 chr6 102594327 102594638 -79820604 + AluY SINE Alu 1 311 0 22 56 0 0 chr6 102594675 102594711 -79820531 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr6 102595282 102595305 -79819937 + AT_rich Low_complexity Low_complexity 1 23 0 276 102 0 0 chr6 102597312 102597361 -79817881 + (A)n Simple_repeat Simple_repeat 1 49 0 205 369 39 10 chr6 102598246 102598349 -79816893 - MER5A DNA MER1_type 0 189 84 305 133 0 0 chr6 102599337 102599397 -79815845 - L1PA14 LINE L1 -2 6159 6100 1822 149 4 7 chr6 102599397 102599738 -79815504 - L1PA14 LINE L1 -142 6019 5675 392 58 0 0 chr6 102599710 102599762 -79815480 + L1P4 LINE L1 5675 5726 -437 * 2882 109 5 2 chr6 102599798 102600220 -79815022 - L1P4 LINE L1 -448 5726 5304 234 222 0 0 chr6 102600529 102600574 -79814668 - MIR SINE MIR -63 145 101 1620 182 37 66 chr6 102601176 102601555 -79813687 + MLT1B LTR MaLR 23 390 0 1850 240 33 13 chr6 102601816 102602274 -79812968 - MLT1C LTR MaLR 0 467 1 25 75 0 0 chr6 102602763 102602816 -79812426 + AT_rich Low_complexity Low_complexity 1 53 0 183 205 0 0 chr6 102602934 102602973 -79812269 + CT-rich Low_complexity Low_complexity 5 43 0 3331 136 17 8 chr6 102605372 102605894 -79809348 - MER1A DNA MER1_type 0 527 1 301 294 106 0 chr6 102605999 102606128 -79809114 - MIR SINE MIR -62 146 30 614 38 0 0 chr6 102606963 102607043 -79808199 - AluYb8 SINE Alu 0 318 239 18604 188 45 18 chr6 102609300 102616636 -79798606 + L1PA7 LINE L1 23 7571 -2 3097 127 41 0 chr6 102616636 102617146 -79798096 + L1MA1 LINE L1 5769 6302 0 308 188 82 24 chr6 102617422 102617507 -79797735 + L1MC4 LINE L1 6614 6703 -1339 345 217 93 16 chr6 102617518 102617647 -79797595 - MIR SINE MIR -3 259 121 1952 56 0 8 chr6 102618021 102618273 -79796969 + L1PA7 LINE L1 5890 6139 -15 242 276 164 30 chr6 102618316 102618450 -79796792 + MIR SINE MIR 3 154 -108 235 188 0 0 chr6 102618472 102618520 -79796722 + L2 LINE L2 3222 3269 -3 297 0 0 0 chr6 102619231 102619264 -79795978 + (CA)n Simple_repeat Simple_repeat 2 34 0 31 44 0 0 chr6 102620562 102620607 -79794635 + AT_rich Low_complexity Low_complexity 1 45 0 1142 262 27 40 chr6 102621247 102621621 -79793621 - LTR40c LTR ERVL -37 428 60 207 0 0 0 chr6 102621621 102621644 -79793598 + (T)n Simple_repeat Simple_repeat 1 23 0 818 298 24 16 chr6 102622030 102622282 -79792960 - MIR SINE MIR -6 256 3 205 297 99 59 chr6 102622292 102622393 -79792849 + L2 LINE L2 3209 3313 0 22 0 0 0 chr6 102622507 102622529 -79792713 + AT_rich Low_complexity Low_complexity 1 22 0 321 218 39 0 chr6 102622722 102622800 -79792442 + MIR3 SINE MIR 121 201 -7 214 341 114 8 chr6 102623394 102623517 -79791725 - MIR SINE MIR -55 207 72 1381 123 186 108 chr6 102623870 102624106 -79791136 - MSTA LTR MaLR 0 428 147 2523 37 0 46 chr6 102624106 102624432 -79790810 - AluY SINE Alu 0 311 1 1381 123 186 108 chr6 102624432 102624592 -79790650 - MSTA LTR MaLR -281 147 1 421 285 60 52 chr6 102625545 102625812 -79789430 + MLT1J LTR MaLR 224 492 -19 2185 114 0 3 chr6 102625828 102626136 -79789106 - AluSg SINE Alu -3 307 1 207 211 42 11 chr6 102626709 102626804 -79788438 + (TTA)n Simple_repeat Simple_repeat 3 100 0 656 241 15 0 chr6 102626852 102626989 -79788253 + FAM SINE Alu 1 40 -9 234 314 57 29 chr6 102627005 102627145 -79788097 - L1ME LINE L1 -459 5662 5519 661 170 0 0 chr6 102627152 102627264 -79787978 + FRAM SINE Alu 51 162 -14 32 57 0 0 chr6 102627335 102627388 -79787854 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr6 102627605 102627626 -79787616 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 102627727 102627748 -79787494 + AT_rich Low_complexity Low_complexity 1 21 0 3563 120 3 68 chr6 102628361 102629004 -79786238 - LTR43 LTR ERV1 0 602 2 24 53 0 0 chr6 102630106 102630144 -79785098 + AT_rich Low_complexity Low_complexity 1 38 0 420 306 24 0 chr6 102630277 102630401 -79784841 - MIR SINE MIR -108 154 28 21 36 0 0 chr6 102630577 102630605 -79784637 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 102631673 102631696 -79783546 + (CAA)n Simple_repeat Simple_repeat 2 24 0 29 0 0 0 chr6 102631868 102631897 -79783345 + AT_rich Low_complexity Low_complexity 1 29 0 786 236 234 9 chr6 102631980 102632548 -79782694 + LTR50 LTR ERVL 8 793 -2 186 312 130 0 chr6 102632648 102632725 -79782517 - L2 LINE L2 -31 3282 3196 188 83 0 28 chr6 102632886 102632922 -79782320 + (CGGGGG)n Simple_repeat Simple_repeat 6 40 0 493 276 53 53 chr6 102632930 102633213 -79782029 - L2 LINE L2 -443 2871 2589 862 159 0 0 chr6 102633354 102633486 -79781756 + AluSq/x SINE Alu 2 133 -179 21 57 0 0 chr6 102634020 102634055 -79781187 + AT_rich Low_complexity Low_complexity 1 35 0 1937 255 63 25 chr6 102634159 102634790 -79780452 - L1ME1 LINE L1 -124 6042 5388 253 301 71 51 chr6 102635083 102635266 -79779976 - MIR SINE MIR -57 205 15 226 197 0 15 chr6 102635885 102635951 -79779291 - L1MC4 LINE L1 -1334 6708 6644 2173 143 11 26 chr6 102635999 102636377 -79778865 + Tigger2a DNA MER2_type 2 373 -61 443 306 48 69 chr6 102636388 102636679 -79778563 + L2 LINE L2 1027 1311 -2003 360 0 0 0 chr6 102637234 102637274 -79777968 + (CA)n Simple_repeat Simple_repeat 2 41 0 328 389 20 7 chr6 102637309 102637458 -79777784 + L3 LINE CR1 1394 1544 -33 23 54 0 0 chr6 102638378 102638415 -79776827 + AT_rich Low_complexity Low_complexity 1 37 0 283 326 52 12 chr6 102639569 102639741 -79775501 - HAL1 LINE L1 -84 2423 2245 29 28 0 0 chr6 102639856 102639892 -79775350 + AT_rich Low_complexity Low_complexity 1 36 0 813 268 14 1 chr6 102640721 102640936 -79774306 - MIR SINE MIR -15 247 31 281 293 51 18 chr6 102641064 102641323 -79773919 - HAL1b LINE L1 -832 1675 373 320 284 106 14 chr6 102641404 102641545 -79773697 - HAL1 LINE L1 -1322 1185 1032 5720 199 114 60 chr6 102642022 102643644 -79771598 - MER52A LTR ERV1 0 1755 46 333 305 148 24 chr6 102644121 102644331 -79770911 - L1M2 LINE L1 -6225 624 389 625 272 18 111 chr6 102644930 102645272 -79769970 + L2 LINE L2 1711 2020 -1294 2130 123 3 7 chr6 102645331 102645633 -79769609 - AluSx SINE Alu -11 301 1 889 232 53 76 chr6 102645722 102646024 -79769218 + LTR52 LTR ERVL 79 373 -48 245 310 133 9 chr6 102646026 102646139 -79769103 + L2 LINE L2 2096 2222 -1092 428 100 58 0 chr6 102646143 102646263 -79768979 + (TA)n Simple_repeat Simple_repeat 1 127 0 1673 304 111 34 chr6 102646268 102646696 -79768546 + L2 LINE L2 2260 2654 -659 1797 122 0 113 chr6 102646696 102647040 -79768202 + AluSx SINE Alu 1 305 -7 1673 304 111 34 chr6 102647040 102647580 -79767662 + L2 LINE L2 2654 3311 -2 234 105 0 0 chr6 102647842 102647880 -79767362 + (TG)n Simple_repeat Simple_repeat 1 38 0 1068 175 24 32 chr6 102651140 102651386 -79763856 + L1MA8 LINE L1 4963 5206 -940 4842 178 31 21 chr6 102651401 102652013 -79763229 + L1MA8 LINE L1 5181 5808 -483 255 61 0 0 chr6 102652013 102652046 -79763196 + (CA)n Simple_repeat Simple_repeat 2 34 0 4842 178 31 21 chr6 102652046 102652531 -79762711 + L1MA8 LINE L1 5808 6287 -4 395 226 32 0 chr6 102652533 102652626 -79762616 + MER5A DNA MER1_type 11 106 -83 1493 128 155 0 chr6 102652854 102653112 -79762130 + AluSx SINE Alu 12 309 -3 200 312 21 57 chr6 102653481 102653622 -79761620 - L2 LINE L2 -464 2850 2715 195 100 0 0 chr6 102654069 102654099 -79761143 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 225 238 0 48 chr6 102654370 102654475 -79760767 - L1ME4a LINE L1 -31 6090 5991 409 341 72 54 chr6 102654843 102655082 -79760160 - HAL1b LINE L1 -605 743 510 1895 184 83 5 chr6 102655082 102655479 -79759763 - MSTA LTR MaLR 0 428 1 409 341 72 54 chr6 102655479 102655755 -79759487 - HAL1b LINE L1 -838 510 219 378 0 0 0 chr6 102656836 102656878 -79758364 + (CA)n Simple_repeat Simple_repeat 1 42 0 629 168 24 24 chr6 102656884 102657009 -79758233 - AluJb SINE Alu -59 253 129 232 405 25 0 chr6 102658505 102658626 -79756616 + MIR SINE MIR 52 175 -87 321 264 140 45 chr6 102659030 102659208 -79756034 - MIR SINE MIR -2 260 66 225 0 0 0 chr6 102659293 102659318 -79755924 + (TA)n Simple_repeat Simple_repeat 1 25 0 1366 246 94 65 chr6 102659721 102660488 -79754754 - HAL1 LINE L1 -728 1779 991 1621 235 22 3 chr6 102660620 102660977 -79754265 + MLT1A1 LTR MaLR 1 364 -1 222 152 61 0 chr6 102661165 102661231 -79754011 + (TA)n Simple_repeat Simple_repeat 1 70 0 329 170 41 7 chr6 102661247 102661394 -79753848 + (TA)n Simple_repeat Simple_repeat 1 152 0 192 253 66 55 chr6 102662648 102662739 -79752503 + MIR SINE MIR 49 140 -122 187 289 127 78 chr6 102663072 102663214 -79752028 + L2 LINE L2 3124 3272 0 1732 168 37 19 chr6 102663354 102663676 -79751566 - MLT2C1 LTR ERVL -59 338 11 2021 68 0 79 chr6 102664254 102664575 -79750667 + AluY SINE Alu 21 318 0 2323 114 6 3 chr6 102664801 102665134 -79750108 + THE1C LTR MaLR 42 375 0 36 23 0 0 chr6 102665242 102665285 -79749957 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 102665471 102665492 -79749750 + AT_rich Low_complexity Low_complexity 1 21 0 1240 179 289 77 chr6 102665736 102666193 -79749049 + MLT2B3 LTR ERVL 1 554 0 25 0 0 0 chr6 102666407 102666432 -79748810 + AT_rich Low_complexity Low_complexity 1 25 0 240 374 47 11 chr6 102666459 102666649 -79748593 - MIR SINE MIR -18 244 48 27 49 0 0 chr6 102667242 102667283 -79747959 + AT_rich Low_complexity Low_complexity 1 41 0 181 254 51 0 chr6 102667669 102667728 -79747514 - MIR SINE MIR -72 190 129 1974 141 0 3 chr6 102667874 102668165 -79747077 + AluSx SINE Alu 3 292 -20 35 0 0 0 chr6 102668266 102668301 -79746941 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr6 102668476 102668505 -79746737 + AT_rich Low_complexity Low_complexity 1 29 0 328 286 164 29 chr6 102668855 102669026 -79746216 + MIR SINE MIR 45 238 -24 180 77 0 0 chr6 102669656 102669682 -79745560 + (A)n Simple_repeat Simple_repeat 1 26 0 704 152 24 0 chr6 102670147 102670272 -79744970 + AluSg/x SINE Alu 176 303 -9 1764 188 76 3 chr6 102670500 102670830 -79744412 - MLT1A1 LTR MaLR -11 354 1 21 0 0 0 chr6 102671786 102671807 -79743435 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr6 102672137 102672185 -79743057 + AT_rich Low_complexity Low_complexity 1 48 0 21 71 0 0 chr6 102673140 102673182 -79742060 + AT_rich Low_complexity Low_complexity 1 42 0 189 269 215 39 chr6 102673193 102673323 -79741919 - MIR SINE MIR -81 181 29 33 0 0 0 chr6 102673609 102673642 -79741600 + AT_rich Low_complexity Low_complexity 1 33 0 2325 127 36 5 chr6 102673689 102674100 -79741142 + L1MA2 LINE L1 5881 6304 0 669 193 76 12 chr6 102677326 102677629 -79737613 - MLT1A2 LTR MaLR 0 365 1 180 0 0 0 chr6 102678006 102678026 -79737216 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1685 188 5 60 chr6 102678865 102679233 -79736009 + MER7A DNA MER2_type 1 346 0 385 276 94 0 chr6 102679399 102679526 -79735716 - MER103 DNA DNA -5 161 23 3383 124 18 16 chr6 102681061 102681625 -79733617 + L1PA13 LINE L1 5599 6163 0 255 298 298 0 chr6 102682001 102682132 -79733110 - MIR3 SINE MIR -7 201 32 21 36 0 0 chr6 102682461 102682489 -79732753 + AT_rich Low_complexity Low_complexity 1 28 0 318 117 91 26 chr6 102683422 102683499 -79731743 + Tigger3(Golem) DNA MER2_type 203 284 -2745 427 294 84 0 chr6 102684052 102684195 -79731047 - MIR SINE MIR -4 258 104 316 181 24 0 chr6 102684342 102684425 -79730817 + (TA)n Simple_repeat Simple_repeat 1 85 0 6460 154 32 16 chr6 102684828 102686039 -79729203 + Tigger3b DNA MER2_type 2 1231 0 226 345 115 46 chr6 102686252 102686556 -79728686 - L2 LINE L2 0 3272 2948 189 0 0 0 chr6 102686926 102686947 -79728295 + (TG)n Simple_repeat Simple_repeat 1 21 0 32 43 0 0 chr6 102687966 102688012 -79727230 + AT_rich Low_complexity Low_complexity 1 46 0 26 50 0 0 chr6 102688104 102688144 -79727098 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr6 102688464 102688492 -79726750 + AT_rich Low_complexity Low_complexity 1 28 0 419 228 33 0 chr6 102689313 102689405 -79725837 - FRAM SINE Alu -65 101 7 464 48 16 0 chr6 102689405 102689468 -79725774 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 1725 128 22 4 chr6 102689472 102689745 -79725497 - AluSx SINE Alu -22 290 13 4660 178 22 54 chr6 102689764 102689961 -79725281 + L1PA16 LINE L1 4842 5044 -1122 21 0 0 0 chr6 102689961 102689982 -79725260 + AT_rich Low_complexity Low_complexity 1 21 0 4660 178 22 54 chr6 102689982 102691153 -79724089 + L1PA16 LINE L1 5044 6166 0 33 25 0 0 chr6 102691467 102691507 -79723735 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr6 102691589 102691613 -79723629 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 102691782 102691808 -79723434 + AT_rich Low_complexity Low_complexity 1 26 0 827 182 12 18 chr6 102692422 102692587 -79722655 + FRAM SINE Alu 1 40 0 237 318 87 17 chr6 102693370 102693543 -79721699 + L1ME3A LINE L1 5374 5558 -606 464 364 50 19 chr6 102693546 102693909 -79721333 + L1ME3A LINE L1 5591 5964 -206 935 213 84 0 chr6 102695945 102696170 -79719072 - MER58 DNA MER1_type -2139 281 38 237 333 179 6 chr6 102697676 102697844 -79717398 - MIR SINE MIR -31 231 35 21 0 0 0 chr6 102697916 102697937 -79717305 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 102698413 102698437 -79716805 + AT_rich Low_complexity Low_complexity 1 24 0 454 247 19 76 chr6 102699876 102700034 -79715208 + MIR SINE MIR 57 205 -57 232 233 23 23 chr6 102700147 102700233 -79715009 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 4614 191 20 22 chr6 102700525 102701969 -79713273 - L1MA7 LINE L1 -46 7664 6226 281 70 0 0 chr6 102702012 102702055 -79713187 - L1PA6 LINE L1 -1 6153 6111 815 48 67 0 chr6 102702057 102702162 -79713080 - L1PA6 LINE L1 -12 6142 6031 1468 77 5 0 chr6 102702162 102702356 -79712886 + L1PA6 LINE L1 5846 6040 -114 * 4392 194 21 33 chr6 102702352 102703064 -79712178 - L1MA7 LINE L1 -1350 6215 5519 2106 44 4 0 chr6 102703064 102703315 -79711927 - AluY SINE Alu -3 308 57 4392 194 21 33 chr6 102703315 102703679 -79711563 - L1MA7 LINE L1 -2046 5519 5152 2498 244 36 29 chr6 102703678 102704923 -79710319 - L1MA7 LINE L1 -3413 4152 2900 * 1189 218 72 0 chr6 102704938 102705231 -79710011 - L1MA3 LINE L1 0 6305 5992 * 3050 179 83 5 chr6 102705224 102705866 -79709376 - L1 LINE L1 -1224 6341 5650 * 4084 165 42 47 chr6 102705844 102706590 -79708652 - L1 LINE L1 -3324 4241 3500 365 0 22 0 chr6 102706590 102706635 -79708607 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 4084 165 42 47 chr6 102706635 102707332 -79707910 - L1 LINE L1 -4065 3500 2801 * 5794 231 22 5 chr6 102707328 102709146 -79706096 - L1 LINE L1 -5029 2536 5 1409 291 31 19 chr6 102709197 102709640 -79705602 - L1M4c LINE L1 -4761 1623 1170 1743 93 74 19 chr6 102709640 102709898 -79705344 - AluSg SINE Alu -9 301 30 1409 291 31 19 chr6 102709898 102710042 -79705200 - L1M4c LINE L1 -5214 1170 1029 1288 203 111 16 chr6 102710044 102710359 -79704883 + MER2 DNA MER2_type 1 345 0 5070 277 24 15 chr6 102710359 102711800 -79703442 - L1M3de LINE L1 -4872 1781 583 187 324 108 36 chr6 102711963 102712074 -79703168 + L2 LINE L2 3154 3272 0 217 278 135 48 chr6 102712553 102712679 -79702563 + L2 LINE L2 3121 3257 -15 1994 114 0 0 chr6 102713426 102713716 -79701526 - L1PA7 LINE L1 -1367 4779 4490 6556 82 9 0 chr6 102713716 102715058 -79700184 + L1PA7 LINE L1 4800 6151 -3 1314 179 0 0 chr6 102715867 102716079 -79699163 + AluJo SINE Alu 18 229 -83 354 224 13 13 chr6 102716287 102716363 -79698879 + L1PB4 LINE L1 6069 6144 -12 241 221 0 70 chr6 102716361 102716447 -79698795 - L1MC4 LINE L1 -1346 6696 6617 * 22 35 0 0 chr6 102717582 102717611 -79697631 + AT_rich Low_complexity Low_complexity 1 29 0 594 244 144 61 chr6 102718679 102719122 -79696120 - L1MC4 LINE L1 -98 7944 7465 227 200 0 0 chr6 102719368 102719408 -79695834 + MER58B DNA MER1_type 1 40 -301 * 673 253 7 0 chr6 102719403 102719549 -79695693 + MER58B DNA MER1_type 195 341 0 280 316 140 35 chr6 102720862 102721033 -79694209 - MIR SINE MIR -43 219 31 1105 228 9 0 chr6 102723102 102723334 -79691908 + MER46A DNA MER2_type 3 236 0 909 199 76 69 chr6 102724176 102724438 -79690804 + MSTB LTR MaLR 161 424 -2 219 69 0 0 chr6 102726436 102726465 -79688777 + (T)n Simple_repeat Simple_repeat 1 29 0 1991 118 4 0 chr6 102726495 102726766 -79688476 - AluSp SINE Alu -38 275 4 226 323 30 0 chr6 102726785 102726884 -79688358 - MIR SINE MIR -61 201 100 24 53 0 0 chr6 102727493 102727531 -79687711 + AT_rich Low_complexity Low_complexity 1 38 0 2154 268 86 64 chr6 102727553 102728410 -79686832 + L1MD2 LINE L1 32 907 -5633 3507 230 84 84 chr6 102729145 102730873 -79684369 + L1MD2 LINE L1 908 2646 -3894 2320 96 48 31 chr6 102730873 102731229 -79684013 - THE1B LTR MaLR 0 364 3 3507 230 84 84 chr6 102731229 102732723 -79682519 + L1MD2 LINE L1 2646 4139 -2401 1451 210 38 0 chr6 102732725 102733016 -79682226 - MER2 DNA MER2_type 0 345 44 832 206 12 193 chr6 102733023 102733145 -79682097 + L1MD2 LINE L1 4139 4281 -2259 1716 142 3 69 chr6 102733145 102733490 -79681752 - AluSx SINE Alu 0 312 1 832 206 12 193 chr6 102733490 102733792 -79681450 + L1MD2 LINE L1 4281 4429 -2111 2278 100 0 0 chr6 102733792 102734092 -79681150 + AluY SINE Alu 1 300 -11 832 206 12 193 chr6 102734092 102734258 -79680984 + L1MD2 LINE L1 4429 4623 -1917 1709 152 194 8 chr6 102734268 102734629 -79680613 + MSTA LTR MaLR 1 428 0 3654 219 38 64 chr6 102734671 102735879 -79679363 + L1MD2 LINE L1 5444 6618 -18 27 29 0 0 chr6 102735882 102735916 -79679326 + AT_rich Low_complexity Low_complexity 1 34 0 420 255 20 39 chr6 102736012 102736165 -79679077 + L2 LINE L2 3158 3307 -6 182 171 24 0 chr6 102737096 102737137 -79678105 + CT-rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr6 102737137 102737160 -79678082 + AT_rich Low_complexity Low_complexity 1 23 0 451 202 111 10 chr6 102737780 102737879 -79677363 + MLT1B LTR MaLR 2 110 -280 281 294 40 32 chr6 102737882 102738008 -79677234 - MER89-int LTR ERV1 -2148 4653 4527 246 121 0 0 chr6 102738904 102738937 -79676305 + U2 snRNA snRNA 1 33 -155 34 55 0 0 chr6 102739341 102739396 -79675846 + AT_rich Low_complexity Low_complexity 1 55 0 2276 116 0 0 chr6 102739461 102739771 -79675471 - AluSg SINE Alu 0 310 1 26 64 0 0 chr6 102740040 102740087 -79675155 + AT_rich Low_complexity Low_complexity 1 47 0 8409 196 21 4 chr6 102740661 102742443 -79672799 - L1 LINE L1 -1170 6395 4584 8089 176 47 10 chr6 102742483 102743969 -79671273 - L1 LINE L1 -6002 1563 23 218 200 22 0 chr6 102744148 102744193 -79671049 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr6 102745080 102745103 -79670139 + AT_rich Low_complexity Low_complexity 1 23 0 3889 129 33 10 chr6 102745304 102745918 -79669324 - MER41B LTR ERV1 -7 628 1 231 389 89 5 chr6 102747227 102747430 -79667812 + L2 LINE L2 2808 3027 -286 269 259 250 0 chr6 102747480 102747588 -79667654 + L2 LINE L2 3179 3313 0 312 276 52 60 chr6 102748117 102748251 -79666991 + MIR SINE MIR 100 232 -30 251 319 21 0 chr6 102748308 102748402 -79666840 - MIR SINE MIR -93 169 74 2148 114 10 0 chr6 102748440 102748737 -79666505 - AluSq SINE Alu -13 300 1 345 354 46 21 chr6 102748971 102749208 -79666034 + MIR SINE MIR 3 245 -17 1812 165 15 26 chr6 102749245 102749584 -79665658 + MER1B DNA MER1_type 3 337 0 1178 296 39 21 chr6 102749665 102750054 -79665188 + MLT1I LTR MaLR 1 396 -13 192 40 0 0 chr6 102750853 102750878 -79664364 + (GA)n Simple_repeat Simple_repeat 2 26 0 1784 205 40 0 chr6 102750912 102751259 -79663983 - MLT2D LTR ERVL -53 361 1 24 0 0 0 chr6 102751347 102751371 -79663871 + AT_rich Low_complexity Low_complexity 1 24 0 2559 40 0 0 chr6 102752159 102752458 -79662784 + AluY SINE Alu 4 302 -9 356 206 0 52 chr6 102752627 102752724 -79662518 - L1MC4 LINE L1 -1337 6705 6614 207 100 0 0 chr6 102752735 102752765 -79662477 + (TA)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr6 102752814 102752843 -79662399 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr6 102754081 102754107 -79661135 + (TC)n Simple_repeat Simple_repeat 1 26 0 6230 168 29 64 chr6 102754479 102756514 -79658728 - L1MA6 LINE L1 -10 6290 4186 1258 225 69 0 chr6 102756514 102756790 -79658452 + AluJo SINE Alu 1 295 -7 3838 119 3 2 chr6 102756791 102757378 -79657864 + L1PB1 LINE L1 5564 6151 0 6230 168 29 64 chr6 102757378 102757833 -79657409 - L1MA6 LINE L1 -2113 4187 3894 21 36 0 0 chr6 102758240 102758268 -79656974 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr6 102759793 102759837 -79655405 + AT_rich Low_complexity Low_complexity 1 44 0 216 175 0 0 chr6 102760140 102760180 -79655062 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 2036 246 69 30 chr6 102760283 102760951 -79654291 - HsTC2a DNA Tc2 -6 738 45 370 372 59 16 chr6 102761082 102761386 -79653856 - HAL1 LINE L1 -381 2126 1810 579 285 164 18 chr6 102761392 102761673 -79653569 - HAL1 LINE L1 -733 1774 1453 259 279 15 83 chr6 102761765 102762091 -79653151 - HAL1 LINE L1 -1216 1291 988 262 324 0 0 chr6 102762739 102762813 -79652429 - HAL1 LINE L1 -2427 80 7 239 336 45 0 chr6 102762838 102762880 -79652362 - L1MA10 LINE L1 -25 6309 6268 732 311 52 18 chr6 102762880 102763266 -79651976 - L1ME1 LINE L1 -62 6173 5775 3233 259 114 8 chr6 102763300 102764619 -79650623 - L1ME1 LINE L1 -905 5310 3851 430 36 24 48 chr6 102764625 102764709 -79650533 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1882 288 104 30 chr6 102764757 102765772 -79649470 - L1ME1 LINE L1 -5255 1141 51 1284 223 65 39 chr6 102766719 102767105 -79648137 + MSTD LTR MaLR 1 396 0 334 270 58 83 chr6 102767338 102767579 -79647663 - L1MCa LINE L1 -4865 2076 1842 582 228 11 63 chr6 102767596 102767785 -79647457 - L1MCa LINE L1 -5139 1284 1106 2723 56 0 0 chr6 102767794 102768131 -79647111 - L1PA4 LINE L1 -417 5737 5401 3205 30 23 0 chr6 102768131 102768522 -79646720 + L1PA4 LINE L1 5743 6144 -11 29 0 0 0 chr6 102768522 102768551 -79646691 + AT_rich Low_complexity Low_complexity 1 29 0 290 325 84 42 chr6 102768617 102768808 -79646434 - L1MCa LINE L1 -5406 1017 819 987 329 53 32 chr6 102769472 102770459 -79644783 - L1MEc LINE L1 -4755 1641 635 1617 101 93 0 chr6 102770860 102771165 -79644077 - AluSq SINE Alu 0 331 3 484 347 34 15 chr6 102771183 102771509 -79643733 - L1MEc LINE L1 -5974 422 91 207 256 0 0 chr6 102771784 102771827 -79643415 + (CTG)n Simple_repeat Simple_repeat 2 44 0 35 0 0 0 chr6 102772258 102772293 -79642949 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 102772547 102772568 -79642674 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 102774464 102774486 -79640756 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 102774538 102774561 -79640681 + AT_rich Low_complexity Low_complexity 1 23 0 200 59 29 0 chr6 102775377 102775411 -79639831 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1593 290 84 22 chr6 102775708 102776509 -79638733 + L1ME3A LINE L1 5318 6167 -3 3406 160 30 28 chr6 102778337 102779012 -79636230 - Tigger3(Golem) DNA MER2_type -1 3028 2353 791 220 39 28 chr6 102779001 102779183 -79636059 - Tigger3(Golem) DNA MER2_type -2825 204 21 * 425 266 47 0 chr6 102781285 102781413 -79633829 - MER94 DNA DNA 0 134 1 285 343 54 12 chr6 102781528 102781694 -79633548 + MIR SINE MIR 20 192 -70 232 365 19 0 chr6 102782608 102782712 -79632530 - L2 LINE L2 -1018 2296 2191 1701 268 139 52 chr6 102782966 102783744 -79631498 + L1MCa LINE L1 20 729 -5697 1210 197 77 79 chr6 102783744 102784175 -79631067 + MSTB1 LTR MaLR 3 432 0 1701 268 139 52 chr6 102784175 102784434 -79630808 + L1MCa LINE L1 729 964 -5462 1826 166 14 0 chr6 102784434 102784729 -79630513 + AluSx SINE Alu 1 299 -13 1701 268 139 52 chr6 102784729 102784987 -79630255 + L1MCa LINE L1 964 1429 -4997 3040 240 28 8 chr6 102785004 102786441 -79628801 + L1MB7 LINE L1 4457 5925 -259 1515 149 8 0 chr6 102786451 102786686 -79628556 - AluJb SINE Alu -25 287 51 1993 137 3 0 chr6 102786692 102786991 -79628251 - AluSx SINE Alu -12 300 1 248 273 0 0 chr6 102786991 102787046 -79628196 - AluJb SINE Alu -247 55 1 964 221 37 8 chr6 102787054 102787298 -79627944 + L1MB7 LINE L1 5920 6170 -14 1703 198 86 90 chr6 102787361 102788027 -79627215 + L1ME1 LINE L1 5406 6091 -73 337 259 38 8 chr6 102787965 102788096 -79627146 + L1MA10 LINE L1 6192 6326 -8 * 233 258 16 16 chr6 102788504 102788566 -79626676 - L2 LINE L2 -1 3271 3210 21706 143 15 19 chr6 102789012 102795441 -79619801 + L1PA8A LINE L1 3 6446 0 237 65 0 0 chr6 102796722 102796753 -79618489 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 243 0 0 0 chr6 102796797 102796824 -79618418 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr6 102797107 102797128 -79618114 + AT_rich Low_complexity Low_complexity 1 21 0 368 188 17 120 chr6 102797260 102797377 -79617865 - MER31A LTR ERV1 -28 457 353 28 0 0 0 chr6 102798565 102798593 -79616649 + AT_rich Low_complexity Low_complexity 1 28 0 1388 205 120 19 chr6 102800224 102800648 -79614594 + MLT1C LTR MaLR 1 467 0 279 284 74 58 chr6 102801051 102801402 -79613840 - L1MEd LINE L1 -4839 1710 1371 366 42 0 0 chr6 102801846 102801894 -79613348 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 23 33 0 0 chr6 102802671 102802701 -79612541 + AT_rich Low_complexity Low_complexity 1 30 0 492 321 112 34 chr6 102803187 102803688 -79611554 - L1M4 LINE L1 -1488 4658 4119 528 301 39 5 chr6 102803717 102803920 -79611322 - L1MB7 LINE L1 -9 6175 5966 320 286 85 30 chr6 102804050 102804249 -79610993 - L1M4 LINE L1 -2162 3984 3775 1197 304 100 6 chr6 102804258 102804728 -79610514 - MLT1F LTR MaLR 0 542 29 352 329 123 9 chr6 102805154 102805373 -79609869 - MIR SINE MIR -14 248 5 593 305 65 47 chr6 102805400 102805829 -79609413 + L1 LINE L1 2752 3188 -2958 351 319 107 62 chr6 102805892 102806490 -79608752 - HAL1 LINE L1 -788 1719 1095 362 284 160 0 chr6 102806545 102806714 -79608528 - L1ME LINE L1 -5098 1107 912 254 311 15 15 chr6 102806725 102806860 -79608382 - L1ME LINE L1 -5456 940 806 557 94 12 0 chr6 102807230 102807315 -79607927 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 510 308 41 37 chr6 102807475 102807966 -79607276 - L1ME LINE L1 -5046 1024 532 431 280 41 118 chr6 102808258 102808697 -79606545 - L1ME LINE L1 -5654 416 12 432 282 78 35 chr6 102809044 102809186 -79606056 - L3 LINE CR1 -1 1576 1429 501 17 0 0 chr6 102810104 102810162 -79605080 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2145 131 3 0 chr6 102811516 102811829 -79603413 - MER4A LTR ERV1 0 664 351 1728 119 38 38 chr6 102811826 102812014 -79603228 - MER4A LTR ERV1 -143 521 335 * 2017 142 0 0 chr6 102812014 102812309 -79602933 - AluSg SINE Alu -15 295 1 1728 119 38 38 chr6 102812309 102812573 -79602669 - MER4A LTR ERV1 -329 335 1 247 250 0 0 chr6 102812583 102812635 -79602607 + GA-rich Low_complexity Low_complexity 1 52 0 316 307 68 31 chr6 102813001 102813164 -79602078 + L2 LINE L2 3114 3282 -31 4741 196 7 10 chr6 102813302 102814234 -79601008 - L1MA4 LINE L1 -7 6293 5360 2369 143 11 0 chr6 102814234 102814605 -79600637 - THE1C LTR MaLR 0 375 1 8471 142 42 48 chr6 102814605 102816195 -79599047 - THE1C-int LTR MaLR 0 1580 1 2025 170 5 24 chr6 102816195 102816577 -79598665 - THE1C LTR MaLR 0 375 1 4741 196 7 10 chr6 102816577 102816601 -79598641 - L1MA4 LINE L1 -937 5363 5338 * 5310 214 51 46 chr6 102816595 102816737 -79598505 + L1 LINE L1 3535 3675 -2471 237 108 0 0 chr6 102816737 102816774 -79598468 + (CA)n Simple_repeat Simple_repeat 2 38 0 5310 214 51 46 chr6 102816774 102817831 -79597411 + L1 LINE L1 3675 4800 -1346 1283 137 83 0 chr6 102817831 102817890 -79597352 + AluSq SINE Alu 62 115 -214 243 0 0 0 chr6 102817890 102817917 -79597325 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1283 137 83 0 chr6 102817917 102818108 -79597134 + AluSq SINE Alu 115 329 0 5310 214 51 46 chr6 102818108 102818636 -79596606 + L1 LINE L1 4800 5324 -822 611 188 58 7 chr6 102819283 102819437 -79595805 - L1MA4 LINE L1 -1362 4784 4623 801 254 0 0 chr6 102819484 102819685 -79595557 + L1PA15 LINE L1 4783 4983 -1163 5015 156 14 12 chr6 102819694 102820573 -79594669 + L1PA15 LINE L1 5286 6165 0 506 361 136 15 chr6 102821310 102821847 -79593395 - L2 LINE L2 -337 2977 2376 1278 198 146 34 chr6 102821891 102822301 -79592941 - MSTB2 LTR MaLR -1 456 1 2205 113 0 3 chr6 102822307 102822608 -79592634 - AluSx SINE Alu -12 300 1 330 225 62 0 chr6 102822613 102822693 -79592549 - L2 LINE L2 -971 2343 2259 30 0 0 0 chr6 102822784 102822814 -79592428 + AT_rich Low_complexity Low_complexity 1 30 0 454 301 94 66 chr6 102823401 102823720 -79591522 + LTR33 LTR ERVL 23 350 -171 288 297 0 0 chr6 102824414 102824488 -79590754 + (CA)n Simple_repeat Simple_repeat 1 74 0 1373 212 92 22 chr6 102824668 102824713 -79590529 - MLT2C1 LTR ERVL -3 394 354 195 114 0 0 chr6 102824713 102824748 -79590494 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 1373 212 92 22 chr6 102824748 102825070 -79590172 - MLT2C1 LTR ERVL -43 354 1 189 0 0 0 chr6 102825433 102825454 -79589788 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 230 340 49 28 chr6 102825454 102825598 -79589644 + MIR SINE MIR 100 246 -16 294 312 25 6 chr6 102826844 102827001 -79588241 + L1ME LINE L1 5490 5649 -472 1856 188 31 6 chr6 102827006 102827362 -79587880 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr6 102827367 102827395 -79587847 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 102827982 102828015 -79587227 + AT_rich Low_complexity Low_complexity 1 33 0 351 0 0 0 chr6 102830350 102830389 -79584853 + (TG)n Simple_repeat Simple_repeat 2 40 0 470 329 60 12 chr6 102830743 102830995 -79584247 + LTR16C LTR ERVL 163 426 -65 227 114 23 0 chr6 102831528 102831572 -79583670 + (TG)n Simple_repeat Simple_repeat 2 46 0 3187 73 2 7 chr6 102831673 102832123 -79583119 - LTR7 LTR ERV1 -2 448 1 2452 89 45 13 chr6 102832123 102832503 -79582739 - HERVH LTR ERV1 0 7713 7322 1314 122 18 44 chr6 102832501 102832730 -79582512 - HERVH LTR ERV1 -1894 5819 5597 * 4278 148 0 3 chr6 102832727 102833391 -79581851 - HERVH LTR ERV1 -2564 5149 4488 3297 116 6 2 chr6 102833393 102833893 -79581349 - HERVH LTR ERV1 -3720 3993 3492 917 133 7 0 chr6 102833883 102834033 -79581209 - HERVH LTR ERV1 -4423 3290 3140 * 19024 87 50 18 chr6 102834012 102836913 -79578329 - HERVH LTR ERV1 -4718 2995 1 3272 67 2 7 chr6 102836915 102837365 -79577877 - LTR7 LTR ERV1 -2 448 1 4216 270 62 33 chr6 102837365 102838918 -79576324 + L1MDa LINE L1 72 1669 -4871 361 190 103 9 chr6 102838942 102839058 -79576184 + L1MDa LINE L1 1914 2040 -4500 334 324 29 7 chr6 102839102 102839238 -79576004 + L2 LINE L2 2736 2874 -440 872 209 42 4 chr6 102840141 102840380 -79574862 - Charlie5 DNA MER1_type 0 2618 2371 569 291 86 16 chr6 102841467 102841711 -79573531 - L2 LINE L2 -813 2501 2241 305 225 35 6 chr6 102841715 102841888 -79573354 + (TA)n Simple_repeat Simple_repeat 1 178 0 1103 84 7 0 chr6 102842675 102842829 -79572413 + THE1A-int LTR MaLR 1426 1580 0 2215 137 6 11 chr6 102842829 102843186 -79572056 + THE1A LTR MaLR 1 355 0 544 219 0 34 chr6 102843193 102843312 -79571930 - L2 LINE L2 0 3313 3199 223 303 101 56 chr6 102845508 102845686 -79569556 + MIR3 SINE MIR 6 191 -17 1422 181 43 25 chr6 102846010 102846287 -79568955 + AluJb SINE Alu 1 282 -30 279 0 0 0 chr6 102846301 102846332 -79568910 + (CA)n Simple_repeat Simple_repeat 2 32 0 241 79 63 16 chr6 102846336 102846399 -79568843 + (TA)n Simple_repeat Simple_repeat 1 66 0 24 91 0 0 chr6 102848989 102849055 -79566187 + AT_rich Low_complexity Low_complexity 1 66 0 34 24 0 0 chr6 102849450 102849491 -79565751 + AT_rich Low_complexity Low_complexity 1 41 0 310 365 80 0 chr6 102849557 102849757 -79565485 - L1ME LINE L1 -392 5729 5514 32 67 0 0 chr6 102849813 102849873 -79565369 + AT_rich Low_complexity Low_complexity 1 60 0 242 280 32 21 chr6 102850379 102850472 -79564770 + L1MC/D LINE L1 5489 5582 -2413 192 40 0 0 chr6 102850782 102850807 -79564435 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr6 102850834 102850856 -79564386 + AT_rich Low_complexity Low_complexity 1 22 0 7355 43 1 0 chr6 102851743 102852841 -79562401 + L1PA5 LINE L1 5056 6154 0 2271 155 5 5 chr6 102854005 102854380 -79560862 - THE1C LTR MaLR 0 375 1 9212 129 41 41 chr6 102854380 102855959 -79559283 - THE1C-int LTR MaLR 0 1580 2 2267 116 44 6 chr6 102855960 102856321 -79558921 - THE1C LTR MaLR 0 375 1 1550 206 3 3 chr6 102856715 102857026 -79558216 - AluJb SINE Alu -1 311 1 22 0 0 0 chr6 102857116 102857138 -79558104 + AT_rich Low_complexity Low_complexity 1 22 0 557 329 72 13 chr6 102857983 102858220 -79557022 - MIR SINE MIR 0 262 12 1669 179 0 45 chr6 102858579 102858891 -79556351 + AluJo SINE Alu 3 300 -12 303 28 0 0 chr6 102859320 102859356 -79555886 + (TG)n Simple_repeat Simple_repeat 2 37 0 308 296 113 45 chr6 102859502 102859857 -79555385 - L1ME4a LINE L1 -25 6096 5718 954 283 124 59 chr6 102859863 102861467 -79553775 - L1ME LINE L1 -738 5426 3720 349 291 83 12 chr6 102861461 102861702 -79553540 - L1ME LINE L1 -3519 2627 2370 * 1336 252 57 12 chr6 102861949 102862027 -79553215 + MER76 LTR ERV 1 74 -614 310 138 231 0 chr6 102862027 102862092 -79553150 + MADE1 DNA Mariner 1 80 0 1336 252 57 12 chr6 102862092 102862608 -79552634 + MER76 LTR ERV 74 676 -12 335 163 78 0 chr6 102862820 102862986 -79552256 + (TA)n Simple_repeat Simple_repeat 2 180 0 251 273 0 0 chr6 102863082 102863137 -79552105 + L2 LINE L2 3217 3271 -1 1926 91 12 0 chr6 102863410 102863664 -79551578 + AluSg SINE Alu 32 288 -22 331 204 84 33 chr6 102863668 102863799 -79551443 + L1PB4 LINE L1 4977 5116 -1030 * 765 250 53 10 chr6 102863791 102863999 -79551243 + L1PB4 LINE L1 5937 6153 -3 2323 49 3 30 chr6 102865111 102865416 -79549826 + AluY SINE Alu 1 297 -14 405 39 0 0 chr6 102865417 102865468 -79549774 + (CA)n Simple_repeat Simple_repeat 2 52 0 248 220 17 17 chr6 102865470 102865529 -79549713 + HAL1 LINE L1 810 868 -1639 589 285 57 114 chr6 102865740 102866354 -79548888 - MLT1K LTR MaLR -5 583 5 408 320 93 8 chr6 102866440 102866699 -79548543 + HAL1 LINE L1 1407 1687 -820 24 0 0 0 chr6 102866708 102866732 -79548510 + AT_rich Low_complexity Low_complexity 1 24 0 1801 177 0 3 chr6 102867442 102867742 -79547500 + AluSx SINE Alu 1 299 -13 30 27 0 0 chr6 102868928 102868965 -79546277 + AT_rich Low_complexity Low_complexity 1 37 0 837 117 0 0 chr6 102869100 102869220 -79546022 + MER57A LTR ERV1 1 120 -283 914 204 87 52 chr6 102869502 102869791 -79545451 + MER33 DNA MER1_type 9 307 -17 2367 133 25 5 chr6 102870167 102870535 -79544707 - THE1C LTR MaLR 0 375 1 216 135 0 0 chr6 102870581 102870618 -79544624 + (TA)n Simple_repeat Simple_repeat 1 37 0 203 310 17 0 chr6 102871945 102872003 -79543239 - L2 LINE L2 -23 3249 3191 432 293 30 8 chr6 102873017 102873150 -79542092 - MIR SINE MIR -35 227 92 635 287 17 11 chr6 102873926 102874107 -79541135 - MER5A DNA MER1_type -1 188 7 487 260 138 17 chr6 102875072 102875253 -79539989 + LTR33 LTR ERVL 15 217 -304 490 213 55 92 chr6 102875447 102875611 -79539631 - MER20 DNA MER1_type -61 158 1 31 68 0 0 chr6 102875831 102875890 -79539352 + AT_rich Low_complexity Low_complexity 1 59 0 370 343 0 0 chr6 102876082 102876216 -79539026 + MLT1I LTR MaLR 2 135 -274 225 314 33 25 chr6 102876858 102876979 -79538263 - MIR SINE MIR -3 259 138 393 22 0 0 chr6 102878049 102878095 -79537147 + (TG)n Simple_repeat Simple_repeat 1 46 0 1896 103 66 0 chr6 102878981 102879252 -79535990 - AluSg SINE Alu -21 289 1 234 235 103 0 chr6 102879352 102879420 -79535822 - MIR SINE MIR -67 195 121 2863 9 0 0 chr6 102879481 102879799 -79535443 - AluYb8 SINE Alu 0 318 1 603 181 147 11 chr6 102880312 102880489 -79534753 - MER3 DNA MER1_type -7 202 2 26 30 0 0 chr6 102880563 102880596 -79534646 + AT_rich Low_complexity Low_complexity 1 33 0 228 210 81 0 chr6 102880596 102880658 -79534584 + L1MCc LINE L1 1403 1469 -4954 358 281 67 47 chr6 102880688 102881030 -79534212 + L1MCc LINE L1 1586 1934 -5007 878 317 21 6 chr6 102881065 102881393 -79533849 + L1MCb LINE L1 345 677 -5719 1831 169 51 28 chr6 102881398 102881754 -79533488 - THE1B LTR MaLR 0 364 1 10992 102 30 1 chr6 102881754 102883290 -79531952 - THE1B-int LTR MaLR 0 1580 1 1945 146 48 25 chr6 102883290 102883646 -79531596 - THE1B LTR MaLR 0 364 1 1479 267 127 24 chr6 102883663 102883848 -79531394 + L1MCb LINE L1 686 851 -5545 1885 103 0 11 chr6 102883848 102884129 -79531113 + L1PB1 LINE L1 5874 6151 0 1479 267 127 24 chr6 102884129 102884902 -79530340 + L1MCb LINE L1 851 1743 -4653 820 251 22 6 chr6 102884936 102885115 -79530127 + MER70A LTR ERVL 227 408 -64 567 160 34 50 chr6 102885102 102885221 -79530021 + MER70A LTR ERVL 356 472 0 * 1021 277 44 117 chr6 102885229 102885864 -79529378 + L1MCa LINE L1 310 898 -5147 261 139 0 0 chr6 102885874 102885917 -79529325 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 261 43 0 chr6 102886082 102886197 -79529045 + L1MCb LINE L1 1673 1792 -4423 4743 256 78 24 chr6 102886263 102886809 -79528433 + L1MCa LINE L1 952 1467 -5097 306 0 0 0 chr6 102886809 102886843 -79528399 + (CA)n Simple_repeat Simple_repeat 2 35 0 4743 256 78 24 chr6 102886843 102888594 -79526648 + L1MCa LINE L1 1467 3598 -2966 180 0 0 0 chr6 102888594 102888614 -79526628 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4743 256 78 24 chr6 102888614 102889772 -79525470 + L1MCa LINE L1 3598 4692 -1872 527 257 7 37 chr6 102940196 102940332 -79474910 - MER58C DNA MER1_type -45 170 39 383 314 128 57 chr6 102940859 102941312 -79473930 + L2 LINE L2 2825 3309 -4 1927 127 65 3 chr6 102941820 102942112 -79473130 - AluSx SINE Alu -2 310 1 1421 197 44 30 chr6 102942377 102942743 -79472499 + L1MA8 LINE L1 5917 6287 -4 260 315 94 27 chr6 102942748 102942973 -79472269 + L1MC/D LINE L1 5489 5726 -519 1171 195 59 18 chr6 102943124 102943286 -79471956 + L1PA15 LINE L1 831 985 -5249 1171 159 26 9 chr6 102943286 102943513 -79471729 + L1PA15 LINE L1 6004 6234 0 1171 195 59 18 chr6 102943513 102943653 -79471589 + L1PA15 LINE L1 985 6234 0 24 32 0 0 chr6 102943912 102943943 -79471299 + AT_rich Low_complexity Low_complexity 1 31 0 309 338 31 4 chr6 102943992 102944220 -79471022 + L1ME2 LINE L1 1558 1791 -4605 491 268 42 83 chr6 102944243 102944767 -79470475 + L1ME2 LINE L1 2182 2641 -3574 589 263 201 6 chr6 102944813 102944992 -79470250 + L1PA13 LINE L1 1090 1303 -5484 * 3522 252 145 25 chr6 102944989 102945987 -79469255 + L1PA13 LINE L1 2903 3780 -3017 6503 180 10 4 chr6 102945987 102948060 -79467182 + L1PA13 LINE L1 4727 6811 -3 3522 252 145 25 chr6 102948060 102948534 -79466708 + L1PA13 LINE L1 3780 4196 -2601 1540 202 52 73 chr6 102948534 102948975 -79466267 - MSTB1 LTR MaLR 0 432 1 3522 252 145 25 chr6 102948975 102949360 -79465882 + L1PA13 LINE L1 4196 5047 -1750 264 296 83 38 chr6 102949357 102949621 -79465621 + L1ME2 LINE L1 5070 5345 -870 * 732 221 62 90 chr6 102949642 102949870 -79465372 - MLT1A2 LTR MaLR 0 374 141 2050 137 59 14 chr6 102949870 102950228 -79465014 - THE1C LTR MaLR 0 375 2 8826 124 47 58 chr6 102950229 102951826 -79463416 - THE1C-int LTR MaLR 0 1580 1 2155 153 25 3 chr6 102951826 102952192 -79463050 - THE1C LTR MaLR 0 375 2 732 221 62 90 chr6 102952192 102952250 -79462992 - MLT1A2 LTR MaLR -231 143 93 1007 275 59 53 chr6 102952315 102952861 -79462381 + L1ME2 LINE L1 5332 5880 -355 2085 101 3 20 chr6 102952864 102953162 -79462080 + AluSp SINE Alu 1 293 -20 228 200 14 14 chr6 102953167 102953237 -79462005 + (TTA)n Simple_repeat Simple_repeat 1 70 0 580 239 27 97 chr6 102953275 102953618 -79461624 + L1ME2 LINE L1 5899 6230 -5 192 40 0 0 chr6 102954228 102954253 -79460989 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 240 35 0 0 chr6 102955418 102955447 -79459795 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1664 71 35 0 chr6 102956382 102956608 -79458634 - L1PA7 LINE L1 -11 6143 5910 991 204 22 152 chr6 102956967 102957369 -79457873 - MLT1A1 LTR MaLR 0 365 16 312 27 0 0 chr6 102957510 102957547 -79457695 + (TA)n Simple_repeat Simple_repeat 1 37 0 13106 226 31 15 chr6 102958501 102963165 -79452077 + L1PB3 LINE L1 11 4598 -2272 180 0 0 0 chr6 102963165 102963185 -79452057 + (CAA)n Simple_repeat Simple_repeat 2 21 0 13106 226 31 15 chr6 102963185 102965915 -79449327 + L1PB3 LINE L1 4598 6655 -215 2289 109 3 0 chr6 102965915 102966227 -79449015 + AluSp SINE Alu 1 313 0 13106 226 31 15 chr6 102966227 102966446 -79448796 + L1PB3 LINE L1 6655 6869 -1 245 308 77 10 chr6 102966936 102967040 -79448202 - MIR SINE MIR -24 238 128 228 35 0 0 chr6 102967806 102967835 -79447407 + (TTC)n Simple_repeat Simple_repeat 2 30 0 2205 85 3 0 chr6 102967845 102968127 -79447115 - AluSg SINE Alu -27 283 1 274 383 31 0 chr6 102968152 102968280 -79446962 + MIR3 SINE MIR 62 193 -15 500 286 88 82 chr6 102969612 102970102 -79445140 - L1MEd LINE L1 -4989 1130 638 11739 168 55 30 chr6 102970851 102972429 -79442813 - Tigger1 DNA MER2_type 0 2418 881 6834 58 79 5 chr6 102972429 102973367 -79441875 - L1PA7 LINE L1 -3 6151 5200 11739 168 55 30 chr6 102973367 102973643 -79441599 - Tigger1 DNA MER2_type -1537 881 613 1819 176 0 0 chr6 102973643 102973933 -79441309 + AluSx SINE Alu 3 292 -20 11739 168 55 30 chr6 102973933 102974133 -79441109 - Tigger1 DNA MER2_type -1805 613 419 2089 196 11 36 chr6 102974133 102974572 -79440670 + MSTA LTR MaLR 1 428 0 11739 168 55 30 chr6 102974572 102974874 -79440368 - Tigger1 DNA MER2_type -1999 419 1 1680 195 56 51 chr6 102975190 102975620 -79439622 - MSTB1 LTR MaLR 0 432 1 797 218 24 6 chr6 102975917 102976082 -79439160 - FAM SINE Alu -7 168 1 2793 206 28 30 chr6 102976256 102977306 -79437936 - L1MC/D LINE L1 -511 5822 4777 384 291 33 84 chr6 102978412 102978711 -79436531 - L2 LINE L2 -4 3309 3026 682 187 0 60 chr6 102978714 102978864 -79436378 + AluJb SINE Alu 140 280 -32 1139 295 44 61 chr6 102978910 102979257 -79435985 - L2 LINE L2 -276 3037 2704 1804 88 92 37 chr6 102979257 102979552 -79435690 - AluY SINE Alu 0 311 1 1139 295 44 61 chr6 102979552 102979780 -79435462 - L2 LINE L2 -609 2704 2474 769 187 26 13 chr6 102979792 102979947 -79435295 - LTR40a LTR ERVL -359 160 4 243 316 59 43 chr6 102980154 102980341 -79434901 + MLT1K LTR MaLR 375 564 -24 296 241 176 19 chr6 102980893 102981001 -79434241 - MIR SINE MIR -29 233 109 43845 39 3 1 chr6 102981008 102987155 -79428087 + L1PA3 LINE L1 3 6155 0 267 54 0 0 chr6 102988405 102988442 -79426800 + (TG)n Simple_repeat Simple_repeat 1 37 0 23 33 0 0 chr6 102988518 102988548 -79426694 + AT_rich Low_complexity Low_complexity 1 30 0 191 300 8 85 chr6 102989475 102989605 -79425637 - L2 LINE L2 -638 2676 2557 680 290 52 39 chr6 102990521 102990752 -79424490 - MIR SINE MIR 0 262 29 180 318 167 0 chr6 102990889 102990955 -79424287 - MIR SINE MIR -157 105 29 510 229 0 0 chr6 102991406 102991528 -79423714 + (CATATA)n Simple_repeat Simple_repeat 2 123 0 365 291 51 34 chr6 102991532 102991707 -79423535 + L1ME4a LINE L1 5932 6109 -12 21 57 0 0 chr6 102991925 102991960 -79423282 + AT_rich Low_complexity Low_complexity 1 35 0 213 211 0 133 chr6 102993652 102993742 -79421500 + MIR SINE MIR 120 197 -65 324 311 124 12 chr6 102993932 102994093 -79421149 - MIR SINE MIR -19 243 65 197 316 113 15 chr6 102994737 102994870 -79420372 + MIR SINE MIR 104 249 -13 2800 3 0 3 chr6 102995084 102995394 -79419848 + AluYa5 SINE Alu 1 309 -2 285 204 35 106 chr6 102995555 102995668 -79419574 + MIR SINE MIR 103 207 -55 459 323 70 42 chr6 102995780 102996210 -79419032 + MLT1J1 LTR MaLR 5 446 0 24 0 0 0 chr6 102996441 102996465 -79418777 + AT_rich Low_complexity Low_complexity 1 24 0 518 257 47 0 chr6 102996585 102996733 -79418509 - MIR SINE MIR -26 236 82 553 261 100 46 chr6 102996903 102997144 -79418098 - MLT1I LTR MaLR -143 266 13 313 288 0 0 chr6 102997163 102997236 -79418006 - MIR SINE MIR -182 80 8 2255 252 63 40 chr6 102998109 102998933 -79416309 - L1ME1 LINE L1 -50 6185 5343 1576 231 114 36 chr6 102999038 102999425 -79415817 - L1ME1 LINE L1 -896 5319 4964 205 0 114 0 chr6 102999425 102999460 -79415782 + T-rich Low_complexity Low_complexity 2 40 0 2246 66 0 3 chr6 102999463 102999750 -79415492 - AluY SINE Alu -24 287 2 1576 231 114 36 chr6 102999750 103000141 -79415101 - L1ME1 LINE L1 -1252 4963 4476 21 57 0 0 chr6 103000157 103000192 -79415050 + AT_rich Low_complexity Low_complexity 1 35 0 338 233 95 26 chr6 103000336 103000452 -79414790 - L1ME1 LINE L1 -6017 379 256 180 77 0 0 chr6 103000468 103000494 -79414748 + (TG)n Simple_repeat Simple_repeat 1 26 0 218 135 27 27 chr6 103000518 103000592 -79414650 + (TA)n Simple_repeat Simple_repeat 2 75 0 833 278 101 34 chr6 103000863 103001360 -79413882 + HAL1 LINE L1 1861 2390 -117 807 301 9 4 chr6 103001517 103001743 -79413499 + MIR SINE MIR 15 241 -21 29635 121 18 60 chr6 103003198 103006193 -79409049 - L1PA7 LINE L1 -1 6153 3584 333 0 0 0 chr6 103006193 103006230 -79409012 + (TG)n Simple_repeat Simple_repeat 2 38 0 29635 121 18 60 chr6 103006230 103009663 -79405579 - L1PA7 LINE L1 -2570 3584 8 2076 158 55 19 chr6 103011236 103011615 -79403627 + MSTD LTR MaLR 1 393 -3 31 44 0 0 chr6 103011999 103012044 -79403198 + AT_rich Low_complexity Low_complexity 1 45 0 273 57 0 0 chr6 103013317 103013352 -79401890 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr6 103013527 103013562 -79401680 + AT_rich Low_complexity Low_complexity 1 35 0 212 188 14 0 chr6 103013882 103013951 -79401291 + (TTA)n Simple_repeat Simple_repeat 2 71 0 25 0 0 0 chr6 103014434 103014459 -79400783 + AT_rich Low_complexity Low_complexity 1 25 0 232 258 169 0 chr6 103015712 103015801 -79399441 + MER5A DNA MER1_type 9 112 -77 452 288 28 64 chr6 103016159 103016409 -79398833 - MLT1L LTR MaLR -333 282 42 199 382 18 18 chr6 103016715 103016825 -79398417 + L2 LINE L2 3204 3313 0 1756 161 14 4 chr6 103016943 103017260 -79397982 + AluSx SINE Alu 1 320 0 772 197 0 7 chr6 103017269 103017416 -79397826 - L1MA6 LINE L1 -200 6100 5955 642 224 0 0 chr6 103017432 103017575 -79397667 + L1MA6 LINE L1 6151 6293 -7 261 0 0 0 chr6 103018940 103018969 -79396273 + (TA)n Simple_repeat Simple_repeat 1 29 0 222 344 77 22 chr6 103019833 103020016 -79395226 + MIR SINE MIR 6 198 -64 199 384 0 12 chr6 103020168 103020254 -79394988 + MIR SINE MIR 44 128 -80 534 261 80 32 chr6 103020341 103020590 -79394652 - MIR SINE MIR 0 262 2 2304 113 6 6 chr6 103021443 103021788 -79393454 - L1PB1 LINE L1 0 6151 5807 287 294 98 2 chr6 103021797 103021949 -79393293 - L1ME LINE L1 -656 5514 5350 264 312 26 65 chr6 103022337 103022491 -79392751 - L2 LINE L2 -856 2458 2311 567 315 75 13 chr6 103022589 103022980 -79392262 - L2 LINE L2 -1220 2094 1594 21 0 0 0 chr6 103023081 103023102 -79392140 + AT_rich Low_complexity Low_complexity 1 21 0 586 236 42 31 chr6 103023270 103023461 -79391781 + MER106A DNA MER1_type 29 221 -15 35 54 0 0 chr6 103024833 103024889 -79390353 + AT_rich Low_complexity Low_complexity 1 56 0 12589 166 19 14 chr6 103025577 103027858 -79387384 + Tigger1 DNA MER2_type 28 2321 -97 204 125 0 0 chr6 103028012 103028044 -79387198 + (CA)n Simple_repeat Simple_repeat 2 33 0 1545 164 47 7 chr6 103028139 103028413 -79386829 - AluJo SINE Alu -27 285 1 1608 222 42 50 chr6 103028688 103029143 -79386099 - MLT1D LTR MaLR -3 502 52 21 57 0 0 chr6 103029332 103029367 -79385875 + AT_rich Low_complexity Low_complexity 1 35 0 242 250 73 0 chr6 103029974 103030042 -79385200 - L2 LINE L2 -954 2360 2288 8406 38 9 0 chr6 103030294 103032094 -79383148 + L1PA4 LINE L1 4348 6155 0 5902 111 41 1 chr6 103032100 103033107 -79382135 + L1PA10 LINE L1 5103 6148 -20 315 0 0 0 chr6 103033107 103033142 -79382100 + (CA)n Simple_repeat Simple_repeat 2 36 0 5902 111 41 1 chr6 103033142 103033159 -79382083 + L1PA10 LINE L1 6148 6163 -5 23 33 0 0 chr6 103034911 103034941 -79380301 + AT_rich Low_complexity Low_complexity 1 30 0 3742 202 48 59 chr6 103035389 103036337 -79378905 - L1MC3 LINE L1 -1 7784 6848 2595 156 13 5 chr6 103036337 103036785 -79378457 - L1PA16 LINE L1 -9 6157 5706 3742 202 48 59 chr6 103036785 103036905 -79378337 - L1MC3 LINE L1 -937 6848 6728 1713 305 51 17 chr6 103037228 103037831 -79377411 - MLT1E3 LTR MaLR 0 624 1 2279 109 3 0 chr6 103042508 103042819 -79372423 + AluSp SINE Alu 2 313 0 22 0 0 0 chr6 103042962 103042984 -79372258 + AT_rich Low_complexity Low_complexity 1 22 0 237 338 39 0 chr6 103043151 103043228 -79372014 + MER5B DNA MER1_type 10 89 -89 25 65 0 0 chr6 103043665 103043711 -79371531 + AT_rich Low_complexity Low_complexity 1 46 0 816 175 0 0 chr6 103046090 103046250 -79368992 + CT-rich Low_complexity Low_complexity 2 161 0 358 183 43 0 chr6 103046368 103046483 -79368759 + (TA)n Simple_repeat Simple_repeat 2 121 0 333 0 0 0 chr6 103047035 103047072 -79368170 + (TA)n Simple_repeat Simple_repeat 2 38 0 2096 132 0 0 chr6 103047073 103047376 -79367866 - AluSg SINE Alu -7 303 1 247 289 122 16 chr6 103047493 103047639 -79367603 - MIR SINE MIR -64 144 34 44085 35 1 0 chr6 103047929 103054073 -79361169 + L1PA2 LINE L1 3 6151 -4 23 0 0 0 chr6 103054073 103054096 -79361146 + AT_rich Low_complexity Low_complexity 1 23 0 1322 294 88 36 chr6 103054096 103054780 -79360462 + L1ME3A LINE L1 5452 6170 0 231 159 45 80 chr6 103054827 103054915 -79360327 + L1MC5 LINE L1 7643 7727 -234 22 0 0 0 chr6 103054952 103054974 -79360268 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr6 103055051 103055094 -79360148 + AT_rich Low_complexity Low_complexity 1 43 0 479 301 48 71 chr6 103055127 103055479 -79359763 + L2 LINE L2 2376 2719 -595 255 61 0 0 chr6 103055701 103055734 -79359508 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 22 56 0 0 chr6 103057010 103057046 -79358196 + AT_rich Low_complexity Low_complexity 1 36 0 378 0 0 0 chr6 103058205 103058247 -79356995 + (TG)n Simple_repeat Simple_repeat 1 42 0 497 315 98 49 chr6 103059786 103060091 -79355151 + L2 LINE L2 82 401 -2913 224 77 26 0 chr6 103060091 103060130 -79355112 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 914 54 0 0 chr6 103060130 103060241 -79355001 - L1PA4 LINE L1 -24 6131 6021 275 284 26 26 chr6 103060241 103060357 -79354885 + L2 LINE L2 406 521 -2793 1715 206 27 3 chr6 103060437 103060772 -79354470 + MER2 DNA MER2_type 2 344 0 2052 125 0 13 chr6 103060834 103061138 -79354104 - AluSx SINE Alu -12 300 1 685 298 105 28 chr6 103061262 103061615 -79353627 + L2 LINE L2 1274 1653 -1661 30 27 0 0 chr6 103061914 103061951 -79353291 + AT_rich Low_complexity Low_complexity 1 37 0 320 272 22 60 chr6 103062052 103062320 -79352922 - L1M4 LINE L1 -2167 3979 3722 501 210 0 25 chr6 103062803 103062922 -79352320 - L1MB8 LINE L1 0 6178 6063 584 177 23 15 chr6 103062929 103063059 -79352183 - L1MB8 LINE L1 -398 5780 5650 25 51 0 0 chr6 103063602 103063641 -79351601 + AT_rich Low_complexity Low_complexity 1 39 0 261 214 145 28 chr6 103063953 103064098 -79351144 + L1ME LINE L1 5124 5285 -861 21 0 0 0 chr6 103064195 103064216 -79351026 + AT_rich Low_complexity Low_complexity 1 21 0 230 157 43 86 chr6 103064376 103064422 -79350820 + L1ME LINE L1 5734 5778 -384 2132 141 141 0 chr6 103064422 103064797 -79350445 + MSTA LTR MaLR 1 428 0 230 157 43 86 chr6 103064797 103064820 -79350422 + L1ME LINE L1 5778 5800 -362 280 125 0 0 chr6 103064895 103064935 -79350307 - MLT1D LTR MaLR -437 68 29 21 0 0 0 chr6 103064955 103064976 -79350266 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 103065423 103065452 -79349790 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr6 103065529 103065565 -79349677 + AT_rich Low_complexity Low_complexity 1 36 0 1548 220 28 28 chr6 103065672 103066035 -79349207 - MLT1A2 LTR MaLR -11 363 1 27 49 0 0 chr6 103069879 103069920 -79345322 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr6 103070412 103070433 -79344809 + AT_rich Low_complexity Low_complexity 1 21 0 330 328 151 13 chr6 103071095 103071333 -79343909 - L2 LINE L2 -461 2853 2583 648 280 57 17 chr6 103071364 103071539 -79343703 - MER5A DNA MER1_type -6 183 2 763 152 49 22 chr6 103071609 103071793 -79343449 + MER53 DNA DNA 1 189 0 265 309 64 18 chr6 103071848 103071958 -79343284 - L1MB8 LINE L1 -566 5598 5484 65 0 0 0 chr6 103072315 103072380 -79342862 + AT_rich Low_complexity Low_complexity 1 65 0 298 336 86 0 chr6 103072515 103072655 -79342587 - L1ME LINE L1 -445 5717 5566 756 214 100 63 chr6 103072670 103073131 -79342111 - L1M4 LINE L1 -3316 2830 2243 27 29 0 0 chr6 103073896 103073930 -79341312 + AT_rich Low_complexity Low_complexity 1 34 0 381 95 11 53 chr6 103074007 103074102 -79341140 + (TA)n Simple_repeat Simple_repeat 1 91 0 265 286 30 53 chr6 103074270 103074427 -79340815 - L1ME LINE L1 -1929 4217 4062 28 0 0 0 chr6 103074505 103074533 -79340709 + AT_rich Low_complexity Low_complexity 1 28 0 691 290 88 13 chr6 103074581 103074819 -79340423 - LTR40a LTR ERVL 0 519 264 41704 41 22 1 chr6 103074895 103080924 -79334318 + L1PA3 LINE L1 1 6155 0 238 67 44 0 chr6 103080951 103080996 -79334246 + A-rich Low_complexity Low_complexity 2 48 0 962 195 29 139 chr6 103083050 103083335 -79331907 - MLT1C LTR MaLR -67 400 166 1931 149 50 14 chr6 103083335 103083697 -79331545 - THE1C LTR MaLR 0 375 1 962 195 29 139 chr6 103083697 103083791 -79331451 - MLT1C LTR MaLR -301 166 63 972 235 88 77 chr6 103085040 103085699 -79329543 - L1MC5 LINE L1 -25 7936 7271 2422 238 54 34 chr6 103086820 103087739 -79327503 + L1MC/D LINE L1 4398 5357 -894 2785 10 0 3 chr6 103087739 103088051 -79327191 + AluYa5 SINE Alu 1 311 0 2422 238 54 34 chr6 103088051 103088199 -79327043 + L1MC/D LINE L1 5357 5501 -750 183 292 0 31 chr6 103088257 103088322 -79326920 + MIR SINE MIR 117 179 -83 1215 207 123 4 chr6 103089815 103090153 -79325089 - MER47B DNA MER2_type 0 418 1 5710 173 39 21 chr6 103090220 103090393 -79324849 - Tigger3b DNA MER2_type -1823 1205 1037 2000 137 0 7 chr6 103090393 103090692 -79324550 + AluSx SINE Alu 1 297 -15 5710 173 39 21 chr6 103090692 103091701 -79323541 - Tigger3b DNA MER2_type -1991 1037 2 27 0 0 0 chr6 103092306 103092333 -79322909 + AT_rich Low_complexity Low_complexity 1 27 0 35759 43 6 2 chr6 103092805 103098209 -79317033 - L1P LINE L1 -733 5422 3 253 348 97 38 chr6 103098993 103099283 -79315959 + L2 LINE L2 2062 2368 -946 21 36 0 0 chr6 103099383 103099411 -79315831 + AT_rich Low_complexity Low_complexity 1 28 0 1309 67 28 0 chr6 103099440 103099619 -79315623 - L1PA4 LINE L1 -3 6152 5969 22 0 0 0 chr6 103100523 103100545 -79314697 + AT_rich Low_complexity Low_complexity 1 22 0 388 282 68 10 chr6 103100599 103100763 -79314479 - MIR SINE MIR -14 248 70 511 303 90 32 chr6 103101122 103101310 -79313932 - MIR SINE MIR -51 211 13 39 60 0 0 chr6 103101344 103101411 -79313831 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr6 103102254 103102278 -79312964 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 103102881 103102907 -79312335 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr6 103103326 103103358 -79311884 + AT_rich Low_complexity Low_complexity 1 32 0 255 321 48 0 chr6 103105224 103105308 -79309934 - L2 LINE L2 -6 3307 3220 1039 276 104 36 chr6 103105990 103106596 -79308646 - L1ME1 LINE L1 -169 5997 5351 252 258 39 8 chr6 103106640 103106768 -79308474 + (TA)n Simple_repeat Simple_repeat 2 133 0 563 259 121 40 chr6 103106768 103107116 -79308126 - L1ME1 LINE L1 -886 5260 4885 665 188 32 19 chr6 103107125 103107279 -79307963 - L1MC1 LINE L1 -4 6609 6454 1177 29 0 0 chr6 103107284 103107452 -79307790 + L1PA4 LINE L1 6001 6168 0 7633 262 35 14 chr6 103107463 103111142 -79304100 - L1MC1 LINE L1 -162 6451 2593 3416 175 14 3 chr6 103111138 103111767 -79303475 - L1MA4 LINE L1 -37 6263 5628 * 721 182 127 55 chr6 103111787 103111968 -79303274 - L1MC1 LINE L1 -6217 209 16 678 258 121 24 chr6 103111986 103112234 -79303008 - L1M4 LINE L1 -1254 5390 5119 1979 275 80 39 chr6 103112238 103112477 -79302765 - L1MEc LINE L1 -2637 4007 3779 2301 56 0 7 chr6 103112477 103112792 -79302450 - AluY SINE Alu 0 313 1 1979 275 80 39 chr6 103112792 103113094 -79302148 - L1MEc LINE L1 -2865 3779 3491 1484 150 79 14 chr6 103113094 103113374 -79301868 - AluJb SINE Alu -2 310 13 1979 275 80 39 chr6 103113374 103114785 -79300457 - L1MEc LINE L1 -3153 3491 2005 429 265 79 9 chr6 103114969 103115299 -79299943 - L1MEc LINE L1 -4938 1611 1329 25 75 0 0 chr6 103115357 103115410 -79299832 + AT_rich Low_complexity Low_complexity 1 53 0 409 279 63 37 chr6 103115840 103116030 -79299212 - L1MEc LINE L1 -6128 697 503 222 278 0 0 chr6 103116086 103116140 -79299102 + (ATG)n Simple_repeat Simple_repeat 3 56 0 22 88 0 0 chr6 103118479 103118536 -79296706 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr6 103119917 103119938 -79295304 + AT_rich Low_complexity Low_complexity 1 21 0 226 389 22 61 chr6 103120161 103120341 -79294901 + L2 LINE L2 3084 3256 -16 1953 195 44 7 chr6 103121483 103121894 -79293348 - MSTB LTR MaLR 0 426 1 188 111 28 0 chr6 103123394 103123430 -79291812 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 283 293 78 96 chr6 103124831 103124998 -79290244 - MIR SINE MIR -5 257 94 18833 169 49 13 chr6 103125695 103129190 -79286052 + L1MA1 LINE L1 10 3631 -3934 793 203 11 0 chr6 103129183 103129360 -79285882 + L1M1 LINE L1 5088 5266 -2299 * 558 196 45 8 chr6 103129398 103129531 -79285711 + L1MA1 LINE L1 3702 3839 -3726 6871 134 15 2 chr6 103129571 103130939 -79284303 + L1MA1 LINE L1 6328 7717 -4 31 0 0 0 chr6 103130939 103130970 -79284272 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr6 103132009 103132033 -79283209 + (A)n Simple_repeat Simple_repeat 1 24 0 218 319 14 0 chr6 103132151 103132220 -79283022 + MIR SINE MIR 101 170 -92 24 0 0 0 chr6 103132416 103132440 -79282802 + AT_rich Low_complexity Low_complexity 1 24 0 286 185 25 12 chr6 103133100 103133181 -79282061 + CT-rich Low_complexity Low_complexity 4 85 0 1400 248 56 34 chr6 103133924 103134548 -79280694 - L1M4 LINE L1 -1292 4854 4217 4803 22 0 0 chr6 103134554 103135133 -79280109 - L1PA3 LINE L1 -743 5403 4825 6749 16 0 0 chr6 103135133 103135906 -79279336 + L1PA3 LINE L1 5382 6155 0 268 347 19 42 chr6 103135924 103136140 -79279102 - L1M4 LINE L1 -1918 4228 4018 267 173 0 0 chr6 103136196 103136248 -79278994 + (TG)n Simple_repeat Simple_repeat 1 52 0 1515 250 117 56 chr6 103136356 103137550 -79277692 - L1M4 LINE L1 -2273 3873 2607 1029 308 120 22 chr6 103137640 103137739 -79277503 + L2 LINE L2 2588 2676 -637 330 26 0 0 chr6 103137739 103137778 -79277464 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 2079 101 0 0 chr6 103137782 103138058 -79277184 - AluSx SINE Alu -36 276 1 1029 308 120 22 chr6 103138058 103138606 -79276636 + L2 LINE L2 2678 3313 0 245 329 0 0 chr6 103140949 103141028 -79274214 + L1MDa LINE L1 31 109 -6431 2421 56 0 10 chr6 103141040 103141345 -79273897 - AluY SINE Alu 0 311 10 1565 124 0 0 chr6 103141419 103141645 -79273597 + AluSg/x SINE Alu 82 307 -3 851 172 176 34 chr6 103141812 103142028 -79273214 + MSTA LTR MaLR 3 256 -172 2000 109 95 14 chr6 103142028 103142375 -79272867 - THE1C LTR MaLR 0 375 1 851 172 176 34 chr6 103142375 103142391 -79272851 + MSTA LTR MaLR 256 268 -160 6724 145 16 32 chr6 103142391 103143547 -79271695 - THE1C-int LTR MaLR -16 1564 428 6506 171 18 6 chr6 103143658 103144798 -79270444 + Tigger1 DNA MER2_type 1 1154 -1264 3854 170 6 0 chr6 103144808 103145462 -79269780 + Tigger1 DNA MER2_type 1761 2418 0 185 136 0 45 chr6 103145470 103145514 -79269728 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 186 133 0 0 chr6 103145658 103145688 -79269554 + (TTC)n Simple_repeat Simple_repeat 3 32 0 716 298 116 21 chr6 103145917 103146253 -79268989 + LTR33A LTR ERVL 67 437 -84 232 326 46 63 chr6 103146444 103146531 -79268711 - MIR SINE MIR -55 207 123 2373 59 0 13 chr6 103146531 103146838 -79268404 + AluY SINE Alu 1 303 -8 232 326 46 63 chr6 103146838 103146925 -79268317 - MIR SINE MIR -139 123 36 26 30 0 0 chr6 103146925 103146958 -79268284 + AT_rich Low_complexity Low_complexity 1 33 0 204 220 0 165 chr6 103147717 103147826 -79267416 + MIR SINE MIR 122 212 -50 27 29 0 0 chr6 103148104 103148138 -79267104 + AT_rich Low_complexity Low_complexity 1 34 0 183 42 0 0 chr6 103149334 103149358 -79265884 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1013 73 0 0 chr6 103149359 103149483 -79265759 - AluY SINE Alu -187 124 1 260 198 178 30 chr6 103149588 103149689 -79265553 - MLT1C LTR MaLR -314 153 38 725 269 34 6 chr6 103150350 103150525 -79264717 + MER58A DNA MER1_type 28 207 -17 18918 213 33 20 chr6 103150696 103151892 -79263350 - L1PA12 LINE L1 -1052 6532 5353 2791 10 0 0 chr6 103151892 103152199 -79263043 - AluYb8 SINE Alu -11 307 1 18918 213 33 20 chr6 103152199 103156380 -79258862 - L1PA12 LINE L1 -2231 5353 2 257 365 8 0 chr6 103156900 103157026 -79258216 + L1M3e LINE L1 62 188 -6903 2318 278 9 28 chr6 103158378 103159137 -79256105 + L1M3e LINE L1 1592 2375 -4723 2325 63 0 30 chr6 103159137 103159478 -79255764 + AluY SINE Alu 1 332 0 2318 278 9 28 chr6 103159478 103159659 -79255583 + L1M3e LINE L1 2375 2558 -4540 1679 202 20 14 chr6 103159669 103160021 -79255221 + MER47A DNA MER2_type 13 366 0 1733 284 73 30 chr6 103160023 103161303 -79253939 + L1M1 LINE L1 2616 4067 -3498 5301 210 19 8 chr6 103161338 103163412 -79251830 + L1PA15 LINE L1 4089 6157 -8 22 0 0 0 chr6 103163413 103163435 -79251807 + AT_rich Low_complexity Low_complexity 1 22 0 292 298 38 72 chr6 103163441 103163503 -79251739 + L1ME4a LINE L1 5642 5705 -416 1897 149 4 0 chr6 103163503 103163811 -79251431 - AluSx SINE Alu 0 311 3 292 298 38 72 chr6 103163811 103164008 -79251234 + L1ME4a LINE L1 5705 5894 -227 25 65 0 0 chr6 103164021 103164067 -79251175 + AT_rich Low_complexity Low_complexity 1 46 0 689 214 0 0 chr6 103164078 103164209 -79251033 + L1M1 LINE L1 4190 4320 -3245 614 228 7 7 chr6 103164202 103164347 -79250895 + L1MA7 LINE L1 2438 2582 -4914 * 385 258 0 10 chr6 103164359 103164456 -79250786 - L1MA7 LINE L1 -3249 4316 4221 1865 240 90 23 chr6 103164470 103165348 -79249894 + L1MA7 LINE L1 4322 5341 -2224 * 2073 180 18 13 chr6 103165334 103165901 -79249341 + L1MA7 LINE L1 6534 7106 -604 * 41719 41 22 1 chr6 103165900 103171925 -79243317 + L1PA2 LINE L1 3 6155 0 619 178 17 8 chr6 103171923 103172041 -79243201 + L1MA7 LINE L1 7094 7212 -498 * 233 132 0 19 chr6 103172052 103172105 -79243137 + LTR66 LTR ERVL 386 437 -173 629 143 0 10 chr6 103172129 103172227 -79243015 + MER4A LTR ERV1 2 98 -566 1598 146 162 77 chr6 103172228 103172592 -79242650 + MER4A LTR ERV1 262 656 -8 1886 223 31 13 chr6 103172620 103172922 -79242320 + L1MA7 LINE L1 7202 7518 -192 2917 3 0 0 chr6 103172922 103173240 -79242002 + AluYb8 SINE Alu 1 318 0 1886 223 31 13 chr6 103173240 103173413 -79241829 + L1MA7 LINE L1 7518 7686 -24 1523 297 36 40 chr6 103174695 103175463 -79239779 + L1ME LINE L1 11 775 -5295 25 31 0 0 chr6 103175497 103175529 -79239713 + AT_rich Low_complexity Low_complexity 1 32 0 208 380 0 0 chr6 103175546 103175625 -79239617 - MIR SINE MIR -164 98 20 181 311 40 0 chr6 103175646 103175720 -79239522 - MIR SINE MIR -91 171 95 231 146 0 24 chr6 103178334 103178375 -79236867 + MLT1I LTR MaLR 369 408 -1 1303 32 0 0 chr6 103178387 103178543 -79236699 + L1PA4 LINE L1 5999 6154 -1 198 0 0 0 chr6 103180776 103180798 -79234444 + (CA)n Simple_repeat Simple_repeat 2 23 0 432 184 5 189 chr6 103180813 103180998 -79234244 - FRAM SINE Alu -11 155 5 544 68 86 0 chr6 103181128 103181291 -79233951 + (TA)n Simple_repeat Simple_repeat 1 177 0 30 0 0 0 chr6 103181291 103181321 -79233921 + AT_rich Low_complexity Low_complexity 1 30 0 498 70 86 5 chr6 103181321 103181679 -79233563 + (TA)n Simple_repeat Simple_repeat 1 386 0 677 60 16 55 chr6 103181679 103181861 -79233381 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 23 0 0 0 chr6 103181861 103181884 -79233358 + AT_rich Low_complexity Low_complexity 1 23 0 466 298 35 0 chr6 103181887 103182028 -79233214 + L1MEc LINE L1 129 274 -6122 862 267 53 9 chr6 103182262 103182487 -79232755 + LTR40a LTR ERVL 282 516 -3 2020 213 83 42 chr6 103182549 103183342 -79231900 + L1ME1 LINE L1 5094 5919 -247 37 52 0 0 chr6 103184345 103184403 -79230839 + AT_rich Low_complexity Low_complexity 1 58 0 296 253 0 0 chr6 103184447 103184526 -79230716 - L1M4 LINE L1 -5134 1408 1330 * 1954 244 36 7 chr6 103184517 103185078 -79230164 - L1MB7 LINE L1 -56 6128 5552 1771 272 67 24 chr6 103185128 103186282 -79228960 - L1M4c LINE L1 -4589 2057 875 29 0 0 0 chr6 103186837 103186866 -79228376 + AT_rich Low_complexity Low_complexity 1 29 0 2131 220 19 38 chr6 103186995 103187576 -79227666 - L1MD1 LINE L1 -356 5886 5317 374 340 27 69 chr6 103187658 103187993 -79227249 + MARNA DNA Mariner 128 448 -138 192 111 0 0 chr6 103188056 103188092 -79227150 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 222 37 0 0 chr6 103188297 103188324 -79226918 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chr6 103188324 103188355 -79226887 + AT_rich Low_complexity Low_complexity 1 31 0 5945 84 11 4 chr6 103188355 103189606 -79225636 - L1PA8A LINE L1 0 6131 4855 346 247 65 12 chr6 103189680 103189850 -79225392 - L1MDa LINE L1 -4043 2497 2319 21 0 0 0 chr6 103189853 103189874 -79225368 + AT_rich Low_complexity Low_complexity 1 21 0 980 180 38 42 chr6 103189908 103189988 -79225254 - L1MDa LINE L1 -4220 2320 2241 14638 188 31 0 chr6 103189988 103191969 -79223273 + L1PA13 LINE L1 2266 4185 -1978 2477 52 0 3 chr6 103191969 103192276 -79222966 + AluY SINE Alu 3 308 -3 14638 188 31 0 chr6 103192276 103194167 -79221075 + L1PA13 LINE L1 4185 6160 -3 980 180 38 42 chr6 103194167 103194325 -79220917 - L1MDa LINE L1 -4299 2241 2083 1184 183 75 4 chr6 103194333 103194585 -79220657 - Tigger2 DNA MER2_type -1 2717 2448 201 232 0 54 chr6 103396353 103396409 -79018833 + MIR SINE MIR 97 149 -59 23 0 0 0 chr6 103397126 103397149 -79018093 + AT_rich Low_complexity Low_complexity 1 23 0 353 301 88 0 chr6 103399149 103399262 -79015980 + L2 LINE L2 3182 3304 -9 2756 102 0 0 chr6 103399436 103399799 -79015443 - THE1B LTR MaLR -1 363 1 4282 116 5 0 chr6 103399799 103400412 -79014830 - THE1B-int LTR MaLR 0 1580 965 5238 106 3 0 chr6 103400412 103401150 -79014092 + HERVL LTR ERVL 2705 3444 -2210 1072 146 32 10 chr6 103401150 103401357 -79013885 + MLT2A2 LTR ERVL 293 453 0 2049 113 26 16 chr6 103401358 103401669 -79013573 - THE1B LTR MaLR -50 314 1 27 29 0 0 chr6 103401721 103401755 -79013487 + AT_rich Low_complexity Low_complexity 1 34 0 280 155 12 131 chr6 103403055 103403139 -79012103 - LTR50 LTR ERVL -721 74 1 305 345 121 0 chr6 103403700 103403816 -79011426 + L2 LINE L2 3129 3258 -14 245 95 0 24 chr6 103403849 103403891 -79011351 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 23 86 0 0 chr6 103403920 103403978 -79011264 + AT_rich Low_complexity Low_complexity 1 58 0 2076 122 26 50 chr6 103404723 103405107 -79010135 + THE1C LTR MaLR 1 375 0 1566 279 76 54 chr6 103405506 103406719 -79008523 - HAL1b LINE L1 -41 1307 68 207 194 32 0 chr6 103407316 103407409 -79007833 + CT-rich Low_complexity Low_complexity 1 96 0 1198 240 3 24 chr6 103408663 103408951 -79006291 + AluJo SINE Alu 1 282 -30 1096 246 54 23 chr6 103409115 103409670 -79005572 - MLT1E1 LTR MaLR 0 654 1 580 314 62 43 chr6 103409719 103410044 -79005198 + MLT1I LTR MaLR 51 381 -28 540 214 38 0 chr6 103410189 103410320 -79004922 + FLAM_A SINE Alu 6 141 -1 194 0 0 37 chr6 103414316 103414343 -79000899 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 2643 26 0 0 chr6 103415480 103415790 -78999452 + L1PA3 LINE L1 5845 6154 -1 833 242 0 16 chr6 103415910 103416100 -78999142 + MER5A DNA MER1_type 1 187 -2 24 53 0 0 chr6 103416148 103416186 -78999056 + AT_rich Low_complexity Low_complexity 1 38 0 2123 113 0 28 chr6 103417321 103417640 -78997602 + AluSq SINE Alu 1 310 -3 611 198 0 33 chr6 103417767 103417888 -78997354 - FLAM_C SINE Alu -14 129 13 509 285 65 27 chr6 103418592 103418852 -78996390 - MLT1L LTR MaLR -226 389 120 428 287 40 27 chr6 103419313 103419463 -78995779 + MER5B DNA MER1_type 26 177 -1 269 298 229 45 chr6 103419521 103419857 -78995385 - L2 LINE L2 -4 3309 2912 23 33 0 0 chr6 103420865 103420895 -78994347 + AT_rich Low_complexity Low_complexity 1 30 0 57 112 0 0 chr6 103422423 103422690 -78992552 + AT_rich Low_complexity Low_complexity 1 267 0 1563 134 0 0 chr6 103423344 103423568 -78991674 - AluSc SINE Alu -15 294 71 2430 69 3 0 chr6 103423568 103423870 -78991372 - AluY SINE Alu -6 305 1 24 85 0 0 chr6 103423875 103423934 -78991308 + AT_rich Low_complexity Low_complexity 1 59 0 1686 20 0 0 chr6 103426160 103426361 -78988881 - L1PA2 LINE L1 -1 6154 5954 188 279 38 76 chr6 103426993 103427072 -78988170 - MIR3 SINE MIR -32 176 101 24 53 0 0 chr6 103428074 103428112 -78987130 + AT_rich Low_complexity Low_complexity 1 38 0 1446 325 96 35 chr6 103428359 103429425 -78985817 - L2 LINE L2 -73 3240 2112 603 272 7 0 chr6 103430895 103431031 -78984211 + MIR SINE MIR 5 141 -121 185 293 103 78 chr6 103432119 103432235 -78983007 + MIR SINE MIR 20 138 -70 190 73 49 0 chr6 103434149 103434190 -78981052 + (TA)n Simple_repeat Simple_repeat 1 43 0 195 69 0 0 chr6 103434623 103434652 -78980590 + (CA)n Simple_repeat Simple_repeat 2 30 0 258 188 0 0 chr6 103435330 103435378 -78979864 - L2 LINE L2 -5 3308 3261 187 227 68 0 chr6 103435344 103435388 -78979854 - MIR SINE MIR -13 249 203 * 261 57 0 0 chr6 103435976 103436011 -78979231 + (CA)n Simple_repeat Simple_repeat 1 35 0 28 0 0 0 chr6 103436683 103436711 -78978531 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 103436922 103436951 -78978291 + AT_rich Low_complexity Low_complexity 1 29 0 308 286 151 4 chr6 103437678 103437837 -78977405 - MIR SINE MIR -9 253 63 1676 201 80 24 chr6 103438722 103439096 -78976146 + MSTD LTR MaLR 1 395 -1 266 347 51 10 chr6 103439165 103439263 -78975979 + MIR SINE MIR 41 142 -66 187 200 17 17 chr6 103439287 103439347 -78975895 + (TA)n Simple_repeat Simple_repeat 2 61 0 255 125 0 0 chr6 103439446 103439486 -78975756 + (TG)n Simple_repeat Simple_repeat 2 41 0 281 273 132 0 chr6 103440069 103440190 -78975052 + L2 LINE L2 2943 3079 -234 1526 253 78 29 chr6 103440372 103441058 -78974184 - L1ME2 LINE L1 -192 6041 5325 232 244 102 30 chr6 103441192 103441389 -78973853 - L1ME2 LINE L1 -954 5261 5051 * 950 282 91 13 chr6 103441373 103441837 -78973405 - L1ME2 LINE L1 -3036 3179 2680 1287 300 89 20 chr6 103441896 103442822 -78972420 - L1ME2 LINE L1 -4451 1945 917 234 270 22 11 chr6 103442943 103443032 -78972210 - L1ME2 LINE L1 -6211 185 96 21 0 0 0 chr6 103443248 103443269 -78971973 + AT_rich Low_complexity Low_complexity 1 21 0 210 336 75 19 chr6 103443858 103443965 -78971277 - L2 LINE L2 0 3313 3201 219 244 0 0 chr6 103444029 103444074 -78971168 + (CATA)n Simple_repeat Simple_repeat 4 48 0 184 318 71 0 chr6 103444074 103444159 -78971083 - MIR SINE MIR -58 204 114 256 295 54 23 chr6 103447570 103447699 -78967543 + MIR SINE MIR 84 216 -46 328 182 0 0 chr6 103448158 103448213 -78967029 + MER67D LTR ERV1 14 68 -446 1124 225 134 41 chr6 103448215 103448660 -78966582 + MER39 LTR ERV1 1 638 -69 4903 163 34 15 chr6 103448687 103449560 -78965682 - MER49 LTR ERV1 -33 890 1 1605 223 21 24 chr6 103449591 103449968 -78965274 + MER67D LTR ERV1 137 512 -2 212 296 254 7 chr6 103450087 103450229 -78965013 - MER5B DNA MER1_type 0 178 2 251 287 81 0 chr6 103450613 103450700 -78964542 + MER5A DNA MER1_type 13 106 -83 195 338 44 0 chr6 103450829 103450897 -78964345 + L2 LINE L2 3234 3304 -9 2083 115 14 0 chr6 103450945 103451240 -78964002 - AluSx SINE Alu -13 299 1 242 175 39 39 chr6 103451959 103452062 -78963180 + (TTATA)n Simple_repeat Simple_repeat 1 103 0 682 302 185 18 chr6 103452152 103452903 -78962339 + L2 LINE L2 2425 3312 -1 931 233 19 10 chr6 103453093 103453299 -78961943 - MER2 DNA MER2_type -136 209 2 21 36 0 0 chr6 103453685 103453713 -78961529 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 103454075 103454098 -78961144 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1209 237 30 10 chr6 103454532 103454882 -78960360 + MSTD LTR MaLR 1 392 -4 1585 191 0 14 chr6 103455032 103455315 -78959927 + AluJo SINE Alu 1 279 -33 195 69 0 0 chr6 103455317 103455346 -78959896 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr6 103455387 103455410 -78959832 + AT_rich Low_complexity Low_complexity 1 23 0 3596 38 9 9 chr6 103456003 103456447 -78958795 + L1PA4 LINE L1 5704 6147 -8 312 323 31 97 chr6 103457184 103457291 -78957951 + MIR SINE MIR 8 99 -163 2264 64 0 0 chr6 103457291 103457594 -78957648 + AluY SINE Alu 1 303 0 312 323 31 97 chr6 103457594 103457680 -78957562 + MIR SINE MIR 99 189 -73 24 0 0 0 chr6 103457711 103457735 -78957507 + AT_rich Low_complexity Low_complexity 1 24 0 35 41 0 0 chr6 103457944 103457993 -78957249 + AT_rich Low_complexity Low_complexity 1 49 0 13514 179 47 34 chr6 103458382 103458735 -78956507 - Tigger2 DNA MER2_type -3 2715 2368 2085 53 0 0 chr6 103458735 103458997 -78956245 + L1PA5 LINE L1 5890 6151 -3 13514 179 47 34 chr6 103458997 103461323 -78953919 - Tigger2 DNA MER2_type -350 2368 1 22 70 0 0 chr6 103462313 103462356 -78952886 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr6 103462796 103462816 -78952426 + (CAA)n Simple_repeat Simple_repeat 2 21 0 226 158 0 35 chr6 103462874 103462931 -78952311 + L1MCa LINE L1 2006 2060 -4366 332 278 99 37 chr6 103463203 103463665 -78951577 - L1ME LINE L1 -305 5861 5366 301 332 34 71 chr6 103463668 103463990 -78951252 - L1ME LINE L1 -826 5320 5011 195 186 0 0 chr6 103464055 103464098 -78951144 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 201 39 0 0 chr6 103464224 103464250 -78950992 + (TTTTTA)n Simple_repeat Simple_repeat 2 27 0 208 156 0 0 chr6 103464356 103464388 -78950854 + polypyrimidine Low_complexity Low_complexity 3 34 0 910 161 6 6 chr6 103464388 103464568 -78950674 + CT-rich Low_complexity Low_complexity 1 180 0 1828 148 3 62 chr6 103464568 103464893 -78950349 - AluSx SINE Alu -6 306 1 1292 279 28 17 chr6 103464949 103465311 -78949931 + MLT1A2 LTR MaLR 1 366 -8 234 309 10 10 chr6 103465927 103466024 -78949218 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 258 370 108 23 chr6 103466825 103467346 -78947896 + L2 LINE L2 1782 2346 -968 1358 279 50 30 chr6 103467346 103467923 -78947319 + L1ME3A LINE L1 5567 6155 -15 222 375 47 16 chr6 103468008 103468136 -78947106 + L2 LINE L2 2716 2847 -467 21 0 0 0 chr6 103468707 103468728 -78946514 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 103468910 103468933 -78946309 + AT_rich Low_complexity Low_complexity 1 23 0 1018 257 85 106 chr6 103469489 103470194 -78945048 + MER21B LTR ERV1 24 713 -150 338 290 35 21 chr6 103470272 103470417 -78944825 - Charlie8 DNA MER1_type -2168 249 103 677 252 115 68 chr6 103470587 103470865 -78944377 + L1MCb LINE L1 125 415 -5630 245 257 69 10 chr6 103470877 103470978 -78944264 + L1MCb LINE L1 2883 2989 -3575 254 226 0 0 chr6 103471549 103471602 -78943640 - MLT1J2 LTR MaLR -46 404 352 233 311 100 0 chr6 103471686 103471776 -78943466 - MLT1J1 LTR MaLR -244 202 104 319 162 161 2 chr6 103472023 103472095 -78943147 - AluSp/q SINE Alu -3 300 226 1040 60 0 0 chr6 103473531 103473664 -78941578 - L1PA13 LINE L1 -40 6123 5991 182 337 133 33 chr6 103474905 103475086 -78940156 - MIR SINE MIR -55 207 9 21 71 0 0 chr6 103475907 103475949 -78939293 + AT_rich Low_complexity Low_complexity 1 42 0 2251 136 78 29 chr6 103476475 103476888 -78938354 - Tigger2a DNA MER2_type -1 433 1 1441 128 4 9 chr6 103477380 103477606 -78937636 + L1PA8 LINE L1 5945 6169 -3 22 35 0 0 chr6 103478340 103478369 -78936873 + AT_rich Low_complexity Low_complexity 1 29 0 288 102 0 0 chr6 103479565 103479614 -78935628 + (CA)n Simple_repeat Simple_repeat 2 50 0 672 204 21 31 chr6 103479677 103479868 -78935374 - MER53 DNA DNA 0 189 1 247 293 0 50 chr6 103480623 103480722 -78934520 - MLT1L LTR MaLR -372 243 150 12954 161 17 40 chr6 103480782 103480839 -78934403 - Tigger1 DNA MER2_type 0 2418 2361 1837 147 70 14 chr6 103480839 103481194 -78934048 - THE1C LTR MaLR 0 375 1 12954 161 17 40 chr6 103481194 103483610 -78931632 - Tigger1 DNA MER2_type -57 2361 1 189 74 0 0 chr6 103484362 103484389 -78930853 + (TG)n Simple_repeat Simple_repeat 2 28 0 596 305 61 71 chr6 103484521 103484736 -78930506 - L2 LINE L2 -1 3312 3096 1769 120 4 0 chr6 103484736 103485022 -78930220 + AluSx SINE Alu 23 309 0 596 305 61 71 chr6 103485022 103485428 -78929814 - L2 LINE L2 -217 3096 2700 382 357 35 0 chr6 103485470 103485641 -78929601 - L2 LINE L2 -962 2352 2176 334 308 17 0 chr6 103485641 103485761 -78929481 + L1ME LINE L1 5578 5699 -422 220 274 24 0 chr6 103485821 103485905 -78929337 + (TATG)n Simple_repeat Simple_repeat 3 88 0 262 179 0 0 chr6 103486153 103486209 -78929033 - L1MC4 LINE L1 -1339 6703 6648 263 245 0 43 chr6 103486227 103486321 -78928921 - L1MC4 LINE L1 -1339 6703 6614 212 210 0 32 chr6 103486323 103486385 -78928857 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 240 315 0 0 chr6 103486385 103486474 -78928768 + L1MC4 LINE L1 6614 6702 -1340 * 254 250 0 62 chr6 103486411 103486507 -78928735 - L1MC4 LINE L1 -1339 6703 6614 204 320 0 0 chr6 103486507 103486557 -78928685 + (CATA)n Simple_repeat Simple_repeat 4 53 0 310 322 0 0 chr6 103486558 103486645 -78928597 + L1MC4 LINE L1 6617 6703 -1339 * 316 287 23 0 chr6 103486617 103486704 -78928538 - L1MC4 LINE L1 -1339 6703 6615 204 237 0 0 chr6 103486704 103486742 -78928500 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 333 272 0 22 chr6 103486743 103486835 -78928407 - L1MC4 LINE L1 -1339 6703 6614 308 235 0 82 chr6 103486789 103486887 -78928355 + L1MC4 LINE L1 6614 6703 -1339 * 226 266 0 43 chr6 103486899 103486993 -78928249 + L1MC4 LINE L1 6614 6703 -1339 225 178 0 0 chr6 103486994 103487039 -78928203 + (TA)n Simple_repeat Simple_repeat 2 46 0 626 90 0 0 chr6 103489877 103489966 -78925276 - L1MA3 LINE L1 0 6305 6217 338 370 65 89 chr6 103490153 103490569 -78924673 + L1MEd LINE L1 224 629 -5490 300 280 171 30 chr6 103490620 103490924 -78924318 + L1MEd LINE L1 2119 2465 -3664 21 36 0 0 chr6 103491001 103491029 -78924213 + AT_rich Low_complexity Low_complexity 1 28 0 22 88 0 0 chr6 103491597 103491654 -78923588 + AT_rich Low_complexity Low_complexity 1 57 0 300 323 65 8 chr6 103491722 103491846 -78923396 + L1MC/D LINE L1 5502 5632 -2176 219 139 0 0 chr6 103492477 103492513 -78922729 + (TG)n Simple_repeat Simple_repeat 2 37 0 224 392 55 23 chr6 103492860 103493258 -78921984 - L2 LINE L2 -2235 1079 669 21 36 0 0 chr6 103493398 103493426 -78921816 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 103493618 103493645 -78921597 + AT_rich Low_complexity Low_complexity 1 27 0 1890 137 0 7 chr6 103494099 103494409 -78920833 - AluSq SINE Alu 0 308 1 26 30 0 0 chr6 103494754 103494787 -78920455 + AT_rich Low_complexity Low_complexity 1 33 0 238 256 37 37 chr6 103494846 103494928 -78920314 - MLT1G1 LTR MaLR -188 389 286 269 328 95 0 chr6 103494944 103495060 -78920182 - MLT1G1 LTR MaLR -466 129 3 1296 263 77 63 chr6 103495076 103495661 -78919581 + MLT1E LTR MaLR 1 593 0 208 356 167 20 chr6 103495996 103496344 -78918898 + L2 LINE L2 451 849 -2465 226 205 214 60 chr6 103496397 103496514 -78918728 - MLT1J LTR MaLR -165 346 212 228 250 36 0 chr6 103496637 103496693 -78918549 - MLT1J LTR MaLR -412 99 42 417 254 127 36 chr6 103497030 103497255 -78917987 + MIR SINE MIR 14 262 0 353 58 19 0 chr6 103499133 103499185 -78916057 + (TG)n Simple_repeat Simple_repeat 2 54 0 332 253 33 22 chr6 103499470 103499561 -78915681 - L1MC4 LINE L1 -1338 6704 6613 889 228 0 0 chr6 103499792 103499963 -78915279 - AluJb SINE Alu -3 309 139 217 246 98 0 chr6 103499993 103500054 -78915188 + L2 LINE L2 3245 3311 -2 206 203 153 17 chr6 103500344 103500403 -78914839 - L3b LINE CR1 -276 1307 1241 999 302 76 10 chr6 103501058 103501415 -78913827 - MLT1I LTR MaLR 0 409 32 25 75 0 0 chr6 103501718 103501771 -78913471 + AT_rich Low_complexity Low_complexity 1 53 0 294 293 91 107 chr6 103501863 103502378 -78912864 + L2 LINE L2 1881 2387 -927 1432 204 53 0 chr6 103502724 103503188 -78912054 - AluJo SINE Alu 0 481 3 205 293 152 10 chr6 103503202 103503301 -78911941 + L2 LINE L2 2702 2814 -500 246 341 62 28 chr6 103503383 103503559 -78911683 - MER5A DNA MER1_type 0 189 8 26 64 0 0 chr6 103503723 103503770 -78911472 + AT_rich Low_complexity Low_complexity 1 47 0 1153 333 128 13 chr6 103503989 103504692 -78910550 + L3 LINE CR1 676 1459 -118 216 0 0 0 chr6 103504695 103504719 -78910523 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1519 153 86 0 chr6 103504736 103504991 -78910251 - AluSx SINE Alu -35 277 1 800 252 27 46 chr6 103505123 103505385 -78909857 - L1ME1 LINE L1 -5 6161 5905 932 202 5 40 chr6 103505407 103505630 -78909612 + L1MA4A LINE L1 5751 5965 -338 23 65 0 39 chr6 103505640 103505717 -78909525 + AT_rich Low_complexity Low_complexity 1 74 0 195 69 0 0 chr6 103505808 103505837 -78909405 + (CA)n Simple_repeat Simple_repeat 1 29 0 233 313 99 23 chr6 103506364 103506495 -78908747 - MIR SINE MIR -43 219 79 244 351 78 45 chr6 103507030 103507272 -78907970 + MIR SINE MIR 3 252 -10 34 42 0 0 chr6 103508198 103508246 -78906996 + AT_rich Low_complexity Low_complexity 1 48 0 39 108 0 0 chr6 103508450 103508608 -78906634 + AT_rich Low_complexity Low_complexity 1 158 0 234 204 151 21 chr6 103510898 103510991 -78904251 - MER103 DNA DNA -9 157 53 400 300 57 70 chr6 103511132 103511362 -78903880 + L3 LINE CR1 1351 1577 0 189 0 0 0 chr6 103511994 103512015 -78903227 + (GA)n Simple_repeat Simple_repeat 2 22 0 3195 153 41 3 chr6 103514037 103514619 -78900623 + MER6A DNA MER2_type 1 604 -1 2233 129 73 2 chr6 103514766 103515161 -78900081 - L1MA3 LINE L1 0 6305 5883 21 57 0 0 chr6 103515486 103515521 -78899721 + AT_rich Low_complexity Low_complexity 1 35 0 833 283 119 40 chr6 103517736 103518188 -78897054 + LTR33A LTR ERVL 8 495 -28 607 287 194 24 chr6 103518518 103518853 -78896389 - L2 LINE L2 -588 2726 2335 240 287 97 101 chr6 103520849 103521107 -78894135 + MLT1J1 LTR MaLR 58 314 -132 * 270 274 34 34 chr6 103521085 103521202 -78894040 + MLT1J LTR MaLR 360 476 -35 733 290 81 35 chr6 103521490 103521970 -78893272 + HAL1b LINE L1 84 585 -763 1681 148 0 35 chr6 103521974 103522264 -78892978 + AluSx SINE Alu 1 280 -32 704 164 0 7 chr6 103522264 103522404 -78892838 + GA-rich Low_complexity Low_complexity 4 142 0 804 224 102 50 chr6 103523261 103523644 -78891598 + HAL1b LINE L1 858 1260 -88 1621 200 58 0 chr6 103523923 103524368 -78890874 + MLT2B1 LTR ERVL 1 520 0 330 318 32 8 chr6 103524862 103524988 -78890254 + L1MC4 LINE L1 7323 7451 -591 * 477 273 87 27 chr6 103524980 103525347 -78889895 + L1MC5 LINE L1 7270 7658 -303 1350 203 22 0 chr6 103525386 103525662 -78889580 - AluJb SINE Alu -30 282 1 337 286 264 0 chr6 103525694 103525831 -78889411 + L1MC4 LINE L1 7791 7891 -151 2328 98 0 0 chr6 103525831 103526137 -78889105 - AluSg SINE Alu -4 306 1 337 286 264 0 chr6 103526137 103526177 -78889065 + L1MC4 LINE L1 7891 8015 -27 288 318 101 27 chr6 103526259 103526407 -78888835 - MER117 DNA MER1_type -38 159 1 391 192 37 2 chr6 103526849 103526958 -78888284 - L1MC3 LINE L1 -2 7806 7669 195 271 157 0 chr6 103527065 103527135 -78888107 - MIR SINE MIR -135 127 47 185 327 28 37 chr6 103528001 103528108 -78887134 - MIR SINE MIR -76 186 81 310 344 122 0 chr6 103529766 103529897 -78885345 + L2 LINE L2 3109 3255 -17 27 81 0 0 chr6 103530336 103530398 -78884844 + AT_rich Low_complexity Low_complexity 1 62 0 186 103 0 0 chr6 103531038 103531067 -78884175 + (TC)n Simple_repeat Simple_repeat 2 30 0 471 18 0 0 chr6 103531067 103531123 -78884119 + (CA)n Simple_repeat Simple_repeat 1 56 0 466 214 113 119 chr6 103531123 103531363 -78883879 + L1MC5 LINE L1 6719 6956 -1005 195 42 0 0 chr6 103531363 103531387 -78883855 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 466 214 113 119 chr6 103531387 103531608 -78883634 + L1MC5 LINE L1 6956 7177 -784 493 204 8 68 chr6 103532166 103532298 -78882944 + FLAM_A SINE Alu 3 126 -7 23 33 0 0 chr6 103532602 103532632 -78882610 + AT_rich Low_complexity Low_complexity 1 30 0 181 98 49 0 chr6 103532734 103532775 -78882467 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 259 293 71 43 chr6 103533159 103533299 -78881943 + MIR SINE MIR 92 235 -27 2089 132 0 0 chr6 103534423 103534726 -78880516 - AluSg SINE Alu -5 305 3 1447 167 28 50 chr6 103535867 103536184 -78879058 + MER44D DNA MER2_type 23 602 -7 637 372 103 15 chr6 103536189 103536985 -78878257 - L2 LINE L2 -28 3285 2409 1455 239 97 108 chr6 103537007 103537842 -78877400 - LTR1B LTR ERV1 0 826 1 13448 176 47 28 chr6 103537842 103538066 -78877176 - HUERS-P2 LTR ERV1 0 3088 2870 2045 135 0 0 chr6 103538066 103538362 -78876880 - AluSx SINE Alu -16 296 1 13448 176 47 28 chr6 103538362 103541111 -78874131 - HUERS-P2 LTR ERV1 -218 2870 2 1827 222 72 105 chr6 103541112 103541963 -78873279 - LTR1B LTR ERV1 0 826 4 25 31 0 0 chr6 103542342 103542374 -78872868 + AT_rich Low_complexity Low_complexity 1 32 0 512 242 22 102 chr6 103543981 103544304 -78870938 - L1M4 LINE L1 -1359 4787 4497 203 333 96 30 chr6 103546088 103546223 -78869019 + MIR SINE MIR 119 262 0 865 304 78 28 chr6 103546448 103546986 -78868256 + L2 LINE L2 2750 3312 -1 254 297 0 0 chr6 103547003 103547067 -78868175 + MIR SINE MIR 196 259 -3 536 344 42 4 chr6 103547130 103547371 -78867871 - MIR SINE MIR -12 250 1 1945 92 0 0 chr6 103548052 103548325 -78866917 - L1PA13 LINE L1 -1 6162 5890 681 213 26 13 chr6 103548475 103548630 -78866612 - MER90 LTR ERV1 -387 188 32 661 169 31 72 chr6 103548662 103548857 -78866385 - MER53 DNA DNA 0 189 3 26 64 0 0 chr6 103550367 103550414 -78864828 + AT_rich Low_complexity Low_complexity 1 47 0 31 26 0 0 chr6 103553676 103553714 -78861528 + AT_rich Low_complexity Low_complexity 1 38 0 279 306 20 10 chr6 103556918 103557016 -78858226 - MLT1E LTR MaLR -494 99 1 260 353 66 15 chr6 103557350 103557486 -78857756 + MIR SINE MIR 78 220 -42 262 239 155 38 chr6 103558306 103558570 -78856672 - L1ME4a LINE L1 -157 5964 5670 25 0 0 0 chr6 103558820 103558845 -78856397 + AT_rich Low_complexity Low_complexity 1 25 0 456 304 6 25 chr6 103559478 103559636 -78855606 + MIR SINE MIR 95 249 -13 401 343 66 25 chr6 103560373 103560615 -78854627 + L2 LINE L2 2832 3083 -230 5533 176 41 51 chr6 103561739 103562873 -78852369 + Tigger3b DNA MER2_type 110 1231 0 2278 198 25 25 chr6 103563732 103564246 -78850996 + MER67D LTR ERV1 1 514 0 29 0 0 0 chr6 103565328 103565357 -78849885 + AT_rich Low_complexity Low_complexity 1 29 0 264 149 0 0 chr6 103565520 103565567 -78849675 + (TA)n Simple_repeat Simple_repeat 2 48 0 298 212 53 6 chr6 103565598 103565768 -78849474 + (TA)n Simple_repeat Simple_repeat 1 178 0 214 288 125 0 chr6 103566277 103566357 -78848885 - MIR3 SINE MIR -35 173 84 1862 203 48 30 chr6 103567109 103567568 -78847674 + MLT1C LTR MaLR 1 467 0 829 292 109 34 chr6 103567569 103567953 -78847289 + MLT1J2 LTR MaLR 1 413 -37 22 0 0 0 chr6 103568433 103568455 -78846787 + AT_rich Low_complexity Low_complexity 1 22 0 1305 228 0 40 chr6 103568727 103569030 -78846212 + AluJb SINE Alu 15 305 -7 22 0 0 0 chr6 103571004 103571026 -78844216 + AT_rich Low_complexity Low_complexity 1 22 0 244 365 0 0 chr6 103571281 103571377 -78843865 - MIR SINE MIR -6 256 161 21 0 0 0 chr6 103571803 103571824 -78843418 + AT_rich Low_complexity Low_complexity 1 21 0 32 75 0 0 chr6 103573163 103573230 -78842012 + AT_rich Low_complexity Low_complexity 1 67 0 29 47 0 0 chr6 103574234 103574277 -78840965 + AT_rich Low_complexity Low_complexity 1 43 0 25 83 0 0 chr6 103574407 103574467 -78840775 + AT_rich Low_complexity Low_complexity 1 60 0 266 354 12 0 chr6 103575667 103575749 -78839493 - L2 LINE L2 -669 2645 2563 294 225 0 0 chr6 103575896 103575976 -78839266 + CT-rich Low_complexity Low_complexity 2 81 0 1044 142 6 38 chr6 103576443 103576626 -78838616 - FRAM SINE Alu 0 176 1 27 49 0 0 chr6 103576853 103576894 -78838348 + AT_rich Low_complexity Low_complexity 1 41 0 2348 41 7 7 chr6 103576897 103577191 -78838051 - L1PA5 LINE L1 -6 6148 5855 4745 43 2 19 chr6 103577291 103577922 -78837320 - L1P LINE L1 -3192 2954 2335 297 287 40 53 chr6 103578039 103578189 -78837053 + MLT1H LTR MaLR 13 160 -389 1539 125 31 0 chr6 103578572 103578828 -78836414 - L1MA3 LINE L1 0 6305 6042 430 313 61 37 chr6 103579723 103580001 -78835241 + LTR33A LTR ERVL 29 284 -239 21 0 0 0 chr6 103581226 103581247 -78833995 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 103581676 103581703 -78833539 + AT_rich Low_complexity Low_complexity 1 27 0 223 284 239 0 chr6 103582412 103582567 -78832675 + L2 LINE L2 3116 3307 -6 228 67 0 0 chr6 103583587 103583617 -78831625 + (T)n Simple_repeat Simple_repeat 1 30 0 294 352 66 28 chr6 103583833 103584015 -78831227 - MIR SINE MIR -28 234 46 23 0 0 0 chr6 103585160 103585183 -78830059 + AT_rich Low_complexity Low_complexity 1 23 0 417 276 0 32 chr6 103586342 103586465 -78828777 - MIR SINE MIR -142 120 2 436 299 77 26 chr6 103586645 103586839 -78828403 + MIR SINE MIR 54 257 -5 26 30 0 0 chr6 103587354 103587387 -78827855 + AT_rich Low_complexity Low_complexity 1 33 0 350 105 66 26 chr6 103588243 103588319 -78826923 + L1PB4 LINE L1 4403 4481 -1665 4996 174 21 10 chr6 103588333 103589881 -78825361 + L1PB4 LINE L1 4589 6155 -1 323 350 19 12 chr6 103589946 103590106 -78825136 + MIR SINE MIR 89 249 -13 23 33 0 0 chr6 103590332 103590362 -78824880 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 103592637 103592662 -78822580 + AT_rich Low_complexity Low_complexity 1 25 0 228 209 0 0 chr6 103593067 103593110 -78822132 + GA-rich Low_complexity Low_complexity 2 44 0 770 319 63 26 chr6 103594582 103595011 -78820231 + MLT1J LTR MaLR 13 457 -54 7083 56 0 2 chr6 103597311 103598457 -78816785 - L1PA5 LINE L1 -2 6152 5007 22 0 0 0 chr6 103598818 103598840 -78816402 + AT_rich Low_complexity Low_complexity 1 22 0 217 263 0 62 chr6 103599935 103600015 -78815227 + L3 LINE CR1 431 505 -1072 368 283 198 19 chr6 103600071 103600283 -78814959 + L3 LINE CR1 626 875 -702 239 282 0 28 chr6 103600330 103600401 -78814841 + L3 LINE CR1 1508 1576 -1 21 36 0 0 chr6 103600811 103600839 -78814403 + AT_rich Low_complexity Low_complexity 1 28 0 192 152 0 0 chr6 103601036 103601069 -78814173 + GA-rich Low_complexity Low_complexity 3 35 0 1684 165 11 25 chr6 103601683 103601992 -78813250 + AluJb SINE Alu 1 305 0 207 0 0 0 chr6 103602277 103602300 -78812942 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1121 77 26 0 chr6 103602302 103602458 -78812784 - L1PA8 LINE L1 -19 6153 5994 596 239 148 123 chr6 103605207 103605247 -78809995 - MLT1G1 LTR MaLR -2 593 555 4294 168 63 23 chr6 103605247 103606115 -78809127 - MER4D LTR ERV1 0 903 1 596 239 148 123 chr6 103606115 103606552 -78808690 - MLT1G1 LTR MaLR -40 555 64 760 62 0 0 chr6 103607184 103607280 -78807962 + MER4B LTR ERV1 2 97 -513 24145 48 2 4 chr6 103607383 103610960 -78804282 - L1PA5 LINE L1 -249 5905 2335 291 287 40 53 chr6 103611077 103611227 -78804015 + MLT1H LTR MaLR 13 160 -389 2799 10 0 7 chr6 103611594 103611904 -78803338 - AluYa5 SINE Alu -2 309 2 362 226 185 36 chr6 103611940 103612135 -78803107 - HAL1b LINE L1 -392 956 733 379 265 108 29 chr6 103612162 103612366 -78802876 - HAL1b LINE L1 -664 684 465 519 257 197 13 chr6 103612369 103612521 -78802721 - MER5A DNA MER1_type -1 188 9 580 284 65 32 chr6 103612528 103612866 -78802376 - HAL1b LINE L1 -877 471 123 2634 143 29 0 chr6 103613006 103613426 -78801816 - MER41B LTR ERV1 -74 561 130 1309 199 72 8 chr6 103613485 103613847 -78801395 + LTR37A LTR ERV1 39 423 -3 2080 141 3 3 chr6 103613884 103614183 -78801059 - AluJb SINE Alu -13 299 1 191 223 62 0 chr6 103614393 103614505 -78800737 + (TA)n Simple_repeat Simple_repeat 1 119 0 207 0 0 0 chr6 103614925 103614948 -78800294 + (TC)n Simple_repeat Simple_repeat 2 24 0 226 245 0 61 chr6 103614952 103615050 -78800192 + L1MC4 LINE L1 6614 6705 -1337 298 213 0 0 chr6 103615102 103615149 -78800093 - Tigger1 DNA MER2_type -7 2411 2365 201 270 0 0 chr6 103615181 103615281 -78799961 + (TA)n Simple_repeat Simple_repeat 2 101 0 285 224 0 17 chr6 103615290 103615348 -78799894 - Tigger1 DNA MER2_type 0 2418 2362 27 29 0 0 chr6 103615351 103615385 -78799857 + AT_rich Low_complexity Low_complexity 1 34 0 518 184 92 0 chr6 103615485 103615626 -78799616 - Tigger2 DNA MER2_type -104 2614 2461 4290 151 25 7 chr6 103615697 103616432 -78798810 - Tigger2 DNA MER2_type -1969 749 2 22 56 0 0 chr6 103616804 103616840 -78798402 + AT_rich Low_complexity Low_complexity 1 36 0 749 162 150 29 chr6 103616989 103617162 -78798080 + AluJo SINE Alu 99 292 -20 457 279 62 43 chr6 103617410 103617618 -78797624 + MIR SINE MIR 21 232 -30 307 304 116 74 chr6 103618057 103618599 -78796643 + L1M2 LINE L1 563 1127 -5722 3492 164 22 9 chr6 103618999 103619638 -78795604 - L1MB2 LINE L1 -106 6065 5419 2454 74 0 3 chr6 103619916 103620213 -78795029 - AluSx SINE Alu -12 300 5 280 299 109 3 chr6 103620407 103620535 -78794707 + MIR3 SINE MIR 31 169 -39 440 136 111 0 chr6 103620609 103620690 -78794552 - AluSg/x SINE Alu -3 306 217 676 243 88 12 chr6 103620799 103620985 -78794257 + MLT1C LTR MaLR 284 467 0 2376 93 0 0 chr6 103621268 103621570 -78793672 + AluSx SINE Alu 1 302 -10 216 0 0 0 chr6 103621570 103621594 -78793648 + (TA)n Simple_repeat Simple_repeat 2 25 0 2075 162 3 0 chr6 103621594 103621940 -78793302 + L1P LINE L1 4655 5001 -1145 2019 169 60 22 chr6 103622075 103622489 -78792753 - Tigger2a DNA MER2_type 0 434 5 2119 145 3 0 chr6 103622489 103622800 -78792442 + AluSx SINE Alu 1 312 0 998 148 17 6 chr6 103622919 103623095 -78792147 - L1PA16 LINE L1 -142 6024 5847 * 7105 198 22 8 chr6 103623081 103624420 -78790822 - MSTA-int LTR MaLR -294 1357 1 2130 183 61 19 chr6 103624420 103624831 -78790411 - MSTA LTR MaLR 0 428 1 3140 199 12 7 chr6 103624833 103625507 -78789735 - L1 LINE L1 -1798 4348 3672 12168 187 48 35 chr6 103625513 103626060 -78789182 - L1PA15-16 LINE L1 -3260 3589 3050 6594 68 25 0 chr6 103626060 103627241 -78788001 + L1PA7 LINE L1 4950 6153 -1 12168 187 48 35 chr6 103627241 103628338 -78786904 - L1PA15-16 LINE L1 -3799 3050 1968 1747 170 37 0 chr6 103628338 103628632 -78786610 - AluSx SINE Alu -7 305 1 12168 187 48 35 chr6 103628632 103628848 -78786394 - L1PA15-16 LINE L1 -4881 1968 1756 366 23 0 0 chr6 103628848 103628891 -78786351 + (TTA)n Simple_repeat Simple_repeat 2 44 0 12168 187 48 35 chr6 103628891 103629903 -78785339 - L1PA15-16 LINE L1 -5093 1756 615 2354 54 0 4 chr6 103630937 103631216 -78784026 - AluY SINE Alu -33 278 1 25 0 0 0 chr6 103631279 103631304 -78783938 + AT_rich Low_complexity Low_complexity 1 25 0 311 189 16 11 chr6 103631443 103631521 -78783721 + AluJ/FLAM SINE Alu 12 71 -231 6088 148 45 16 chr6 103631621 103632211 -78783031 - Tigger1 DNA MER2_type -929 1489 851 2442 59 3 10 chr6 103632211 103632514 -78782728 - AluY SINE Alu -10 301 1 6088 148 45 16 chr6 103632514 103633029 -78782213 - Tigger1 DNA MER2_type -1567 851 352 23 68 0 0 chr6 103633186 103633230 -78782012 + AT_rich Low_complexity Low_complexity 1 44 0 50 42 0 0 chr6 103633431 103633502 -78781740 + AT_rich Low_complexity Low_complexity 1 71 0 1367 213 22 29 chr6 103633851 103634165 -78781077 + AluJb SINE Alu 1 312 0 25 0 0 0 chr6 103636131 103636156 -78779086 + AT_rich Low_complexity Low_complexity 1 25 0 186 167 0 0 chr6 103637174 103637210 -78778032 + (CATA)n Simple_repeat Simple_repeat 3 38 0 287 83 0 0 chr6 103637951 103637987 -78777255 - U2 snRNA snRNA -152 36 1 1904 142 40 7 chr6 103639828 103640130 -78775112 + AluSx SINE Alu 1 312 0 449 206 28 28 chr6 103640376 103640556 -78774686 + GA-rich Low_complexity Low_complexity 1 180 0 238 321 52 48 chr6 103640590 103640839 -78774403 - L2 LINE L2 -124 3189 2940 5243 100 5 30 chr6 103640865 103641637 -78773605 + LTR17 LTR ERV1 1 753 -27 1231 309 145 23 chr6 103641653 103642040 -78773202 - L2 LINE L2 -360 2954 2616 2154 79 0 14 chr6 103642040 103642320 -78772922 - AluY SINE Alu -15 296 21 2189 104 0 17 chr6 103642320 103642619 -78772623 - AluSg1 SINE Alu -15 294 1 1231 309 145 23 chr6 103642619 103642794 -78772448 - L2 LINE L2 -697 2617 2322 616 237 12 47 chr6 103642803 103642972 -78772270 - L2 LINE L2 -1239 2075 1913 990 138 42 6 chr6 103643144 103643311 -78771931 + AluSg/x SINE Alu 134 306 -6 228 182 0 0 chr6 103643312 103643356 -78771886 + GA-rich Low_complexity Low_complexity 1 44 0 413 266 252 28 chr6 103643356 103643642 -78771600 - L2 LINE L2 -1736 1578 1229 32 81 0 0 chr6 103645195 103645269 -78769973 + AT_rich Low_complexity Low_complexity 1 74 0 21 36 0 0 chr6 103645313 103645341 -78769901 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr6 103645881 103645920 -78769322 + AT_rich Low_complexity Low_complexity 1 39 0 1217 308 235 4 chr6 103645984 103646753 -78768489 + L2 LINE L2 1329 2275 -1039 495 227 130 24 chr6 103647220 103647427 -78767815 + MER96B DNA MER1_type? 188 416 -1 3308 194 30 77 chr6 103647740 103648756 -78766486 - LTR5 LTR ERVK 0 969 1 1076 233 12 8 chr6 103649081 103649321 -78765921 + L1M4 LINE L1 14 254 -6288 552 251 72 48 chr6 103649331 103649498 -78765744 + FRAM SINE Alu 1 170 -6 2324 149 42 42 chr6 103649515 103649966 -78765276 + L1PB3 LINE L1 5699 6149 -5 1199 300 21 10 chr6 103650027 103650414 -78764828 + L1M4 LINE L1 281 671 -5871 25 90 0 0 chr6 103650478 103650545 -78764697 + AT_rich Low_complexity Low_complexity 1 67 0 233 235 0 0 chr6 103651491 103651542 -78763700 - MIR SINE MIR -155 107 57 427 127 14 0 chr6 103651683 103651754 -78763488 - MSTB LTR MaLR 0 426 355 8860 186 13 8 chr6 103651757 103653401 -78761841 - MSTB-int LTR MaLR 0 1651 1 1897 188 51 24 chr6 103653401 103653816 -78761426 - MSTB LTR MaLR 0 426 1 883 264 82 49 chr6 103654089 103654457 -78760785 + MLT1H LTR MaLR 43 422 -127 2070 194 65 45 chr6 103654458 103654923 -78760319 + MLT1D LTR MaLR 1 474 -31 735 208 45 48 chr6 103656044 103656299 -78758943 - MER33 DNA MER1_type -78 246 1 268 286 64 11 chr6 103656383 103656396 -78758846 + MER5A DNA MER1_type 44 55 -134 2372 172 105 25 chr6 103656396 103656873 -78758369 + MLT2B2 LTR ERVL 1 515 0 268 286 64 11 chr6 103656873 103656949 -78758293 + MER5A DNA MER1_type 55 156 -33 184 290 37 75 chr6 103656881 103656988 -78758254 - MER5B DNA MER1_type -75 103 1 * 228 310 121 46 chr6 103657052 103657226 -78758016 + MIR SINE MIR 21 207 -55 1154 212 52 85 chr6 103657324 103657687 -78757555 - MLT1B LTR MaLR -38 352 2 509 223 81 83 chr6 103658371 103658584 -78756658 + MLT2B1 LTR ERVL 110 356 -41 270 0 0 0 chr6 103658584 103658614 -78756628 + (CA)n Simple_repeat Simple_repeat 2 31 0 509 223 81 83 chr6 103658614 103658656 -78756586 + MLT2B1 LTR ERVL 356 397 0 3571 133 50 22 chr6 103658933 103659533 -78755709 + L1PA15 LINE L1 5431 6047 -118 247 315 101 23 chr6 103659740 103659959 -78755283 + HAL1b LINE L1 205 440 -908 498 235 65 46 chr6 103660353 103660506 -78754736 + MLT2E LTR ERVL 22 177 -451 1811 279 39 28 chr6 103710587 103711509 -78703733 + L1M1 LINE L1 2262 3386 -4180 11468 220 42 19 chr6 103712774 103716044 -78699198 + L1M4c LINE L1 2030 5387 -995 882 321 44 42 chr6 103717029 103717506 -78697736 - MLT1H LTR MaLR -1 548 71 21 36 0 0 chr6 103717755 103717783 -78697459 + AT_rich Low_complexity Low_complexity 1 28 0 344 310 40 23 chr6 103719910 103720084 -78695158 + MLT1L LTR MaLR 90 266 -349 523 308 43 43 chr6 103721412 103721688 -78693554 - MER102a DNA MER1_type 0 330 55 2218 127 0 3 chr6 103721716 103722030 -78693212 + AluSq SINE Alu 1 313 0 1232 167 28 52 chr6 103722045 103722333 -78692909 + L1MA7 LINE L1 5521 5801 -379 2545 201 3 0 chr6 103722433 103723127 -78692115 + L1P5 LINE L1 4771 5465 -686 9180 26 1 0 chr6 103723152 103724235 -78691007 - L1PA3 LINE L1 -1030 5116 4033 7585 28 1 1 chr6 103724235 103725278 -78689964 + L1PA3 LINE L1 5110 6152 -3 29 0 0 0 chr6 103725281 103725310 -78689932 + AT_rich Low_complexity Low_complexity 1 29 0 3113 163 18 3 chr6 103725713 103725750 -78689492 - L1MA8 LINE L1 -459 5832 5797 387 0 0 0 chr6 103725750 103725793 -78689449 + (TG)n Simple_repeat Simple_repeat 2 44 0 3113 163 18 3 chr6 103725793 103726401 -78688841 - L1MA8 LINE L1 -494 5797 5172 2563 169 17 122 chr6 103726400 103726593 -78688649 - L1MA8 LINE L1 -1255 4891 4679 * 273 57 0 0 chr6 103726593 103726628 -78688614 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2563 169 17 122 chr6 103726628 103727198 -78688044 - L1MA8 LINE L1 -1467 4679 4208 1876 184 28 18 chr6 103727198 103727632 -78687610 + L1MA7 LINE L1 5847 6285 -6 28 29 0 0 chr6 103727652 103727687 -78687555 + AT_rich Low_complexity Low_complexity 1 35 0 254 294 72 94 chr6 103727866 103728046 -78687196 + MIR SINE MIR 23 198 -64 26 0 0 0 chr6 103728581 103728607 -78686635 + AT_rich Low_complexity Low_complexity 1 26 0 1192 231 15 47 chr6 103728743 103729157 -78686085 - MSTB2 LTR MaLR 0 457 1 1858 203 30 35 chr6 103729395 103729823 -78685419 - MSTC LTR MaLR -2 426 1 254 346 32 16 chr6 103729872 103730057 -78685185 - L1MC/D LINE L1 -2171 5614 5427 1525 189 44 39 chr6 103730076 103730436 -78684806 - L1MB3 LINE L1 -19 6164 5803 1256 194 25 16 chr6 103730436 103730783 -78684459 + Tigger2a DNA MER2_type 1 444 0 2424 192 40 15 chr6 103730784 103731310 -78683932 - L1MB3 LINE L1 -381 5802 5264 22 0 0 0 chr6 103731438 103731460 -78683782 + AT_rich Low_complexity Low_complexity 1 22 0 243 299 73 63 chr6 103731517 103732200 -78683042 - L1MB3 LINE L1 -978 5168 4479 2209 98 14 3 chr6 103732388 103732685 -78682557 + AluSc SINE Alu 1 300 -9 21 57 0 0 chr6 103732703 103732738 -78682504 + AT_rich Low_complexity Low_complexity 1 35 0 2146 125 91 21 chr6 103733363 103733748 -78681494 - MSTA LTR MaLR -2 426 15 232 111 0 0 chr6 103734446 103734482 -78680760 - MSTA LTR MaLR -392 36 1 520 292 77 57 chr6 103734581 103734930 -78680312 - L1MB3 LINE L1 -2705 3441 3086 25 31 0 0 chr6 103735219 103735251 -78679991 + AT_rich Low_complexity Low_complexity 1 32 0 252 226 0 0 chr6 103735624 103735677 -78679565 - MER103 DNA DNA -112 54 2 548 144 18 9 chr6 103736377 103736488 -78678754 + L1MA4A LINE L1 6173 6284 -19 466 335 50 17 chr6 103737470 103737649 -78677593 + MIR SINE MIR 20 204 -58 22 35 0 0 chr6 103738301 103738330 -78676912 + AT_rich Low_complexity Low_complexity 1 29 0 39481 75 7 9 chr6 103738346 103744343 -78670899 + L1PA6 LINE L1 11 5995 -159 3953 42 18 2 chr6 103744443 103744938 -78670304 - MER11B LTR ERVK -733 503 1 248 276 0 41 chr6 103744971 103745069 -78670173 - LTR67 LTR ERVL -374 183 90 5368 138 50 48 chr6 103746833 103747979 -78667263 - L1MC1 LINE L1 -23 6310 5152 1571 210 16 22 chr6 103748111 103748478 -78666764 - MLT1A1 LTR MaLR 0 365 1 305 378 66 52 chr6 103748649 103748935 -78666307 + L2 LINE L2 2983 3272 0 27 0 0 0 chr6 103752073 103752100 -78663142 + AT_rich Low_complexity Low_complexity 1 27 0 6175 53 7 0 chr6 103752101 103752871 -78662371 - L1PA5 LINE L1 -9 6145 5371 3670 36 48 0 chr6 103752870 103753367 -78661875 - L1PA5 LINE L1 -2851 3295 2775 * 2249 100 0 13 chr6 103753793 103754103 -78661139 + AluSq SINE Alu 1 306 -7 21 0 0 0 chr6 103754397 103754418 -78660824 + AT_rich Low_complexity Low_complexity 1 21 0 629 295 6 12 chr6 103755402 103755575 -78659667 - MER58A DNA MER1_type -15 209 38 202 308 128 0 chr6 103756469 103756547 -78658695 - MIR SINE MIR -142 120 33 4093 40 0 0 chr6 103756605 103757100 -78658142 + L1PA4 LINE L1 5659 6153 -2 192 77 0 0 chr6 103757130 103757156 -78658086 + (A)n Simple_repeat Simple_repeat 1 26 0 318 258 24 32 chr6 103757260 103757384 -78657858 - LTR67 LTR ERVL -3 554 432 31 26 0 0 chr6 103758662 103758700 -78656542 + AT_rich Low_complexity Low_complexity 1 38 0 213 65 0 0 chr6 103760246 103760277 -78654965 + (A)n Simple_repeat Simple_repeat 1 31 0 445 183 15 102 chr6 103761759 103761896 -78653346 - MER103 DNA DNA -40 126 2 27 81 0 0 chr6 103762968 103763030 -78652212 + AT_rich Low_complexity Low_complexity 1 62 0 678 195 8 0 chr6 103763281 103763399 -78651843 + AluJb SINE Alu 133 251 -61 396 291 97 31 chr6 103763545 103763741 -78651501 - Charlie8 DNA MER1_type -2170 247 39 1943 172 0 3 chr6 103763750 103764064 -78651178 + AluSq SINE Alu 1 313 0 3207 160 26 33 chr6 103764079 103764743 -78650499 + L1MB4 LINE L1 5521 6179 -1 3035 143 0 99 chr6 103766552 103767139 -78648103 + MER1A DNA MER1_type 1 529 0 3100 194 118 129 chr6 103768047 103769621 -78645621 - MER52A LTR ERV1 -174 1581 26 1726 158 31 136 chr6 103769630 103769811 -78645431 + MER65C LTR ERV1 59 257 -204 1965 131 0 0 chr6 103769811 103770094 -78645148 - AluSq SINE Alu -30 283 1 1726 158 31 136 chr6 103770094 103770362 -78644880 + MER65C LTR ERV1 257 461 0 279 0 0 0 chr6 103770528 103770559 -78644683 + (TTG)n Simple_repeat Simple_repeat 2 32 0 838 232 176 20 chr6 103771237 103771543 -78643699 + MER34 LTR ERV1 25 378 -164 2201 195 60 67 chr6 103771545 103772248 -78642994 + LTR23-int LTR ERV1 1570 2267 -2604 692 240 13 17 chr6 103772467 103772700 -78642542 + LTR23-int LTR ERV1 2263 2494 -2377 29 0 0 0 chr6 103772800 103772829 -78642413 + AT_rich Low_complexity Low_complexity 1 29 0 406 325 29 19 chr6 103772864 103773070 -78642172 + LTR23-int LTR ERV1 2351 2558 -2565 189 0 0 0 chr6 103773428 103773449 -78641793 + (T)n Simple_repeat Simple_repeat 1 21 0 792 136 11 57 chr6 103773449 103773626 -78641616 + LTR23-int LTR ERV1 3562 3730 -2868 986 198 37 45 chr6 103773693 103774018 -78641224 + LTR23-int LTR ERV1 3732 4077 -2254 3940 110 33 78 chr6 103774018 103774738 -78640504 + LTR12 LTR ERV1 1 688 0 986 198 37 45 chr6 103774738 103774825 -78640417 + LTR23-int LTR ERV1 4077 4163 -2168 647 140 88 7 chr6 103776245 103776381 -78638861 + L1MB8 LINE L1 6031 6177 -1 411 310 169 54 chr6 103777779 103778198 -78637044 - L2 LINE L2 0 3313 2811 1714 181 105 0 chr6 103778198 103778551 -78636691 + MLT1B LTR MaLR 1 390 0 411 310 169 54 chr6 103778551 103778682 -78636560 - L2 LINE L2 -502 2811 2697 29 70 0 0 chr6 103779067 103779124 -78636118 + AT_rich Low_complexity Low_complexity 1 57 0 1320 193 28 163 chr6 103779832 103780299 -78634943 - MER67D LTR ERV1 -110 404 1 26 0 0 0 chr6 103780330 103780356 -78634886 + AT_rich Low_complexity Low_complexity 1 26 0 289 359 159 15 chr6 103780473 103780668 -78634574 + MIR SINE MIR 15 237 -25 21 36 0 0 chr6 103781068 103781096 -78634146 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 103781323 103781345 -78633897 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 103781686 103781725 -78633517 + AT_rich Low_complexity Low_complexity 1 39 0 343 374 28 0 chr6 103781990 103782169 -78633073 + MIR SINE MIR 71 254 -8 310 286 60 15 chr6 103782185 103782318 -78632924 - L1ME LINE L1 -412 5709 5571 1999 184 39 22 chr6 103782450 103782907 -78632335 - L1MA4 LINE L1 -15 6285 5821 21 36 0 0 chr6 103783025 103783053 -78632189 + AT_rich Low_complexity Low_complexity 1 28 0 229 258 98 38 chr6 103783063 103783195 -78632047 + L1M4 LINE L1 4203 4342 -1804 4363 232 33 12 chr6 103784093 103785228 -78630014 + L1P LINE L1 2837 3994 -2152 270 0 0 0 chr6 103785379 103785409 -78629833 + (A)n Simple_repeat Simple_repeat 1 30 0 462 313 81 41 chr6 103785487 103785832 -78629410 - MLT1I LTR MaLR -34 375 17 504 0 0 0 chr6 103786331 103786387 -78628855 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 683 285 105 57 chr6 103786604 103786842 -78628400 - L1ME3 LINE L1 -237 5925 5700 2258 88 0 20 chr6 103786842 103787147 -78628095 + AluSq SINE Alu 3 301 -12 683 285 105 57 chr6 103787147 103788122 -78627120 - L1ME3 LINE L1 -462 5700 4625 2158 110 0 16 chr6 103788122 103788430 -78626812 - AluSq SINE Alu -10 303 1 683 285 105 57 chr6 103788430 103788820 -78626422 - L1ME3 LINE L1 -1537 4625 4255 357 321 104 24 chr6 103788839 103789051 -78626191 - L1ME3 LINE L1 -1949 4197 3969 2283 225 28 6 chr6 103789681 103790147 -78625095 - MER70B LTR ERVL -102 476 1 538 260 39 22 chr6 103790661 103790842 -78624400 - LTR33 LTR ERVL -4 517 334 534 291 73 22 chr6 103791127 103791306 -78623936 - LTR33 LTR ERVL -333 188 1 779 333 24 0 chr6 103791321 103791567 -78623675 + MIR SINE MIR 11 262 0 350 160 13 13 chr6 103792346 103792421 -78622821 - MER116 DNA Mariner 0 80 6 532 274 103 0 chr6 103792672 103792847 -78622395 - MIR SINE MIR -67 195 3 5341 131 42 9 chr6 103792908 103793803 -78621439 - Tigger4(Zombi) DNA MER2_type 0 2731 1807 3723 142 24 50 chr6 103793799 103794481 -78620761 - Tigger4(Zombi) DNA MER2_type -2067 664 1 * 232 200 0 33 chr6 103794439 103794499 -78620743 + MER46A DNA MER2_type 103 160 -76 * 234 196 71 0 chr6 103794664 103794720 -78620522 + L1MC/D LINE L1 5695 5754 -488 2695 92 11 3 chr6 103794837 103795207 -78620035 - THE1C LTR MaLR 0 375 3 549 241 24 57 chr6 103795227 103795439 -78619803 - HAL1b LINE L1 -900 448 244 24 0 0 0 chr6 103795805 103795829 -78619413 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 103796750 103796775 -78618467 + AT_rich Low_complexity Low_complexity 1 25 0 2198 108 41 36 chr6 103797005 103797367 -78617875 + THE1B LTR MaLR 1 364 0 367 308 122 6 chr6 103797543 103797715 -78617527 + MIR SINE MIR 5 196 -66 22 56 0 19 chr6 103798275 103798316 -78616926 + AT_rich Low_complexity Low_complexity 1 42 -11 1201 118 11 0 chr6 103798316 103798502 -78616740 - L1PB1 LINE L1 -5 6146 5959 22 56 0 19 chr6 103798502 103798514 -78616728 + AT_rich Low_complexity Low_complexity 42 53 0 2836 84 91 12 chr6 103798514 103798931 -78616311 - L1PA7 LINE L1 -16 6138 5689 10613 95 28 1 chr6 103798931 103800392 -78614850 - L1P3 LINE L1 -4957 1504 4 1348 69 0 32 chr6 103800395 103800583 -78614659 - L1PB1 LINE L1 -176 5975 5794 190 56 56 0 chr6 103800584 103800620 -78614622 + (TA)n Simple_repeat Simple_repeat 2 39 0 573 25 0 3 chr6 103800630 103800704 -78614538 + L1P3 LINE L1 1121 1211 -5250 293 79 0 0 chr6 103800702 103800740 -78614502 + L1PA5 LINE L1 5663 5700 -451 * 871 70 0 0 chr6 103800840 103800955 -78614287 + L1PA5 LINE L1 6036 6150 -4 256 271 132 23 chr6 103801224 103801353 -78613889 + MIR SINE MIR 110 252 -10 291 175 0 0 chr6 103801357 103801414 -78613828 + (TA)n Simple_repeat Simple_repeat 1 57 0 547 263 63 6 chr6 103801462 103801637 -78613605 + MIR SINE MIR 1 185 -77 517 118 7 111 chr6 103802329 103802473 -78612769 - MER33 DNA MER1_type -9 354 226 42 89 0 0 chr6 103802474 103802586 -78612656 + AT_rich Low_complexity Low_complexity 1 112 0 775 219 1 18 chr6 103802586 103802756 -78612486 - MER33 DNA MER1_type -259 65 1 23 0 0 0 chr6 103803141 103803164 -78612078 + AT_rich Low_complexity Low_complexity 1 23 0 238 347 88 12 chr6 103803626 103803796 -78611446 + L2 LINE L2 2151 2333 -981 374 306 18 0 chr6 103803801 103803912 -78611330 - MER81 DNA DNA 0 114 2 818 231 0 0 chr6 103804089 103804262 -78610980 - L1PA16 LINE L1 -1280 4866 4694 * 3086 156 14 18 chr6 103804260 103805007 -78610235 + L1PA16 LINE L1 4881 5818 -348 2241 72 4 0 chr6 103805007 103805330 -78609912 + AluY SINE Alu 4 327 0 3086 156 14 18 chr6 103805330 103805669 -78609573 + L1PA16 LINE L1 5818 6157 -9 199 323 39 39 chr6 103805733 103805863 -78609379 - L2 LINE L2 -90 3223 3094 1837 175 94 13 chr6 103806137 103806531 -78608711 + MSTB LTR MaLR 1 426 0 343 177 48 3 chr6 103807456 103807665 -78607577 + AluJb SINE Alu 1 282 -20 2375 161 6 23 chr6 103808137 103808673 -78606569 + L1M1 LINE L1 4903 5425 -880 1548 199 34 3 chr6 103808673 103808970 -78606272 + AluJb SINE Alu 1 306 -6 2375 161 6 23 chr6 103808970 103809165 -78606077 + L1M1 LINE L1 5425 5622 -683 277 167 19 0 chr6 103809147 103809201 -78606041 - L1M1 LINE L1 -658 5647 5593 * 685 99 0 0 chr6 103809225 103809326 -78605916 + L1MA3 LINE L1 6205 6305 0 21 36 0 0 chr6 103809326 103809354 -78605888 + AT_rich Low_complexity Low_complexity 1 28 0 319 232 37 24 chr6 103809372 103809536 -78605706 + (CATATA)n Simple_repeat Simple_repeat 2 167 0 268 235 74 0 chr6 103809547 103809696 -78605546 + (CATATA)n Simple_repeat Simple_repeat 6 165 0 288 137 68 14 chr6 103809705 103809778 -78605464 - LTR38-int LTR ERV1 -354 1432 1356 210 236 0 0 chr6 103809778 103809833 -78605409 + (CATA)n Simple_repeat Simple_repeat 3 57 0 269 272 0 22 chr6 103809833 103809925 -78605317 + L1MC4 LINE L1 6614 6703 -1339 21 36 0 0 chr6 103810046 103810074 -78605168 + AT_rich Low_complexity Low_complexity 1 28 0 2224 76 3 22 chr6 103810204 103810521 -78604721 - AluY SINE Alu 0 311 1 487 261 185 0 chr6 103811622 103811779 -78603463 + MIR SINE MIR 15 200 -62 249 327 70 105 chr6 103812548 103812918 -78602324 + L2 LINE L2 2915 3271 -1 243 217 0 0 chr6 103813336 103813396 -78601846 + (TA)n Simple_repeat Simple_repeat 2 61 0 231 88 0 0 chr6 103813454 103813488 -78601754 + (CA)n Simple_repeat Simple_repeat 1 34 0 518 325 119 56 chr6 103814219 103814680 -78600562 + LTR33 LTR ERVL 19 508 -13 807 214 90 53 chr6 103815148 103815379 -78599863 - MER69 DNA AcHobo -4 2522 2270 1443 219 13 3 chr6 103815379 103815685 -78599557 - AluJo SINE Alu -3 309 1 807 214 90 53 chr6 103815685 103815831 -78599411 - MER69 DNA AcHobo -256 2270 2131 1868 274 105 34 chr6 103815835 103816570 -78598672 - MER69 DNA AcHobo -1739 787 1 231 283 0 0 chr6 103816571 103816631 -78598611 + MLT1K LTR MaLR 189 248 -340 24 0 0 0 chr6 103816826 103816850 -78598392 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 103817068 103817090 -78598152 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 103817630 103817662 -78597580 + AT_rich Low_complexity Low_complexity 1 32 0 209 173 19 19 chr6 103817852 103817904 -78597338 + (TA)n Simple_repeat Simple_repeat 2 53 0 420 288 52 69 chr6 103817904 103818302 -78596940 - L1ME3 LINE L1 -285 5885 5535 2025 61 0 11 chr6 103819040 103819302 -78595940 + AluY SINE Alu 47 305 -6 28 61 0 0 chr6 103819307 103819356 -78595886 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr6 103819408 103819432 -78595810 + AT_rich Low_complexity Low_complexity 1 24 0 342 333 9 0 chr6 103819825 103819939 -78595303 - L2 LINE L2 -7 3306 3192 22 106 0 0 chr6 103820030 103820115 -78595127 + AT_rich Low_complexity Low_complexity 1 85 0 6161 137 134 116 chr6 103820139 103821806 -78593436 + pTR5 LTR ERV1 741 2438 0 264 262 71 0 chr6 103822785 103822869 -78592373 + L2 LINE L2 2459 2548 -766 564 305 192 25 chr6 103822885 103823396 -78591846 + L1MCc LINE L1 19 614 -5809 2269 101 0 0 chr6 103823400 103823706 -78591536 + AluSc SINE Alu 1 306 -3 475 290 79 32 chr6 103823816 103824095 -78591147 + L1MCc LINE L1 814 1105 -5318 571 251 35 0 chr6 103824122 103824293 -78590949 + L1MCc LINE L1 1166 1342 -5081 1385 333 43 56 chr6 103824329 103825221 -78590021 + L1M3b LINE L1 445 1324 -4957 302 216 10 72 chr6 103825234 103825331 -78589911 - L1MC4 LINE L1 -1340 6702 6612 942 73 13 24 chr6 103825331 103825577 -78589665 + (TA)n Simple_repeat Simple_repeat 2 244 0 23 0 0 0 chr6 103825993 103826016 -78589226 + AT_rich Low_complexity Low_complexity 1 23 0 746 225 0 12 chr6 103826130 103826303 -78588939 - L1PA16 LINE L1 -1179 4967 4797 5317 137 16 13 chr6 103826303 103827496 -78587746 + L1PA16 LINE L1 4966 6154 -12 33 0 0 0 chr6 103827496 103827529 -78587713 + AT_rich Low_complexity Low_complexity 1 33 0 31 0 0 0 chr6 103828170 103828201 -78587041 + AT_rich Low_complexity Low_complexity 1 31 0 1394 208 202 0 chr6 103830093 103830280 -78584962 + MLT2B1 LTR ERVL 3 151 -369 297 0 0 0 chr6 103830280 103830313 -78584929 + (TC)n Simple_repeat Simple_repeat 2 34 0 1394 208 202 0 chr6 103830313 103830466 -78584776 + MLT2B1 LTR ERVL 151 412 -108 258 332 64 25 chr6 103830860 103831062 -78584180 + MLT1J LTR MaLR 301 510 -1 433 322 60 13 chr6 103832284 103832433 -78582809 - MIR3 SINE MIR -30 178 23 228 149 0 0 chr6 103833020 103833067 -78582175 + (CAGAGA)n Simple_repeat Simple_repeat 1 47 0 1744 145 40 43 chr6 103833111 103833462 -78581780 + MER46B DNA MER2_type 11 235 -1 474 288 194 52 chr6 103834226 103834535 -78580707 - MLT1J2 LTR MaLR -23 427 75 31 44 0 0 chr6 103834641 103834686 -78580556 + AT_rich Low_complexity Low_complexity 1 45 0 1971 173 54 61 chr6 103835391 103835820 -78579422 + MSTB LTR MaLR 1 426 0 346 310 27 48 chr6 103836298 103836485 -78578757 + HERVL40 LTR ERVL 2316 2498 -3032 199 316 18 0 chr6 103836679 103836736 -78578506 - MIR3 SINE MIR -36 172 115 2102 280 53 47 chr6 103836739 103836894 -78578348 + HERVL40 LTR ERVL 2812 2965 -2565 403 158 12 0 chr6 103836894 103836976 -78578266 - L1MA3 LINE L1 0 6305 6223 2102 280 53 47 chr6 103836976 103837652 -78577590 + HERVL40 LTR ERVL 2965 3648 -1882 876 250 51 117 chr6 103837980 103838149 -78577093 + L1ME3 LINE L1 5593 5772 -390 2062 120 133 16 chr6 103838149 103838532 -78576710 - MSTA LTR MaLR 0 428 1 8576 170 7 31 chr6 103838532 103840148 -78575094 - MSTA-int LTR MaLR 0 1580 3 2064 119 129 21 chr6 103840151 103840537 -78574705 - MSTA LTR MaLR 0 428 1 876 250 51 117 chr6 103840537 103840935 -78574307 + L1ME3 LINE L1 5773 6127 -35 25 31 0 0 chr6 103841260 103841292 -78573950 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 103841734 103841755 -78573487 + AT_rich Low_complexity Low_complexity 1 21 0 760 301 65 0 chr6 103842880 103843096 -78572146 + MIR SINE MIR 18 247 -15 186 103 0 0 chr6 103843103 103843132 -78572110 + (TTA)n Simple_repeat Simple_repeat 2 30 0 244 167 0 0 chr6 103844025 103844073 -78571169 - Alu SINE Alu -1 301 254 2067 115 0 7 chr6 103844262 103844549 -78570693 - AluSg SINE Alu -25 285 1 213 108 0 0 chr6 103845204 103845241 -78570001 + (TA)n Simple_repeat Simple_repeat 2 38 0 234 273 15 0 chr6 103845245 103845311 -78569931 + MER103 DNA DNA 55 121 -45 289 250 57 86 chr6 103845566 103845706 -78569536 - MIR SINE MIR -4 258 123 2575 114 3 5 chr6 103845913 103846289 -78568953 + THE1C LTR MaLR 1 375 0 8357 121 151 4 chr6 103846289 103847666 -78567576 + THE1C-int LTR MaLR 1 1580 0 2474 101 2 56 chr6 103847666 103848062 -78567180 + THE1C LTR MaLR 1 375 0 283 364 15 0 chr6 103848244 103848376 -78566866 + L1MEc LINE L1 167 300 -6096 254 246 0 0 chr6 103849194 103849255 -78565987 + (AATTG)n Simple_repeat Simple_repeat 3 63 0 191 374 70 47 chr6 103849297 103849468 -78565774 - MIR3 SINE MIR -28 180 6 22 35 0 0 chr6 103849490 103849519 -78565723 + AT_rich Low_complexity Low_complexity 1 29 0 31 26 0 0 chr6 103850990 103851028 -78564214 + AT_rich Low_complexity Low_complexity 1 38 0 549 0 0 0 chr6 103851035 103851096 -78564146 + (TA)n Simple_repeat Simple_repeat 2 62 0 465 129 0 89 chr6 103851149 103851250 -78563992 - L1MA10 LINE L1 -735 5577 5486 3309 193 17 33 chr6 103851250 103851837 -78563405 + L1MA10 LINE L1 5584 6158 -176 206 0 0 65 chr6 103851837 103851868 -78563374 + (CAT)n Simple_repeat Simple_repeat 2 30 0 3309 193 17 33 chr6 103851868 103852033 -78563209 + L1MA10 LINE L1 6158 6324 -10 191 59 0 29 chr6 103852405 103852439 -78562803 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 507 294 12 19 chr6 103953838 103953998 -78461244 - MIR SINE MIR -22 240 82 5701 145 11 44 chr6 103954738 103955833 -78459409 + L1P LINE L1 3233 4290 -1856 1531 161 74 40 chr6 103956155 103956479 -78458763 + MER1B DNA MER1_type 3 337 0 3252 240 40 52 chr6 103956483 103957492 -78457750 + HERVL74 LTR ERVL 4246 5241 -444 588 220 43 14 chr6 103957514 103957655 -78457587 + HERVL74 LTR ERVL 5388 5532 -153 198 220 55 119 chr6 103957656 103957765 -78457477 - L3 LINE CR1 -397 1180 1079 1896 183 43 11 chr6 103957796 103958251 -78456991 + MER74A LTR ERVL 2 558 0 6571 196 26 14 chr6 103958629 103960820 -78454422 + L1MA7 LINE L1 3910 6120 -171 286 367 0 3 chr6 103962514 103962625 -78452617 + MIR SINE MIR 37 145 -63 484 299 45 13 chr6 103962775 103962929 -78452313 + MIR SINE MIR 1 159 -103 24 32 0 0 chr6 103962929 103962960 -78452282 + AT_rich Low_complexity Low_complexity 1 31 0 1920 153 120 30 chr6 103963162 103963555 -78451687 - MSTA LTR MaLR 0 428 1 184 255 21 0 chr6 103964929 103964976 -78450266 - L3 LINE CR1 -75 1502 1455 553 302 82 26 chr6 103964984 103965216 -78450026 - MIR SINE MIR 0 262 18 264 290 0 0 chr6 103965246 103965308 -78449934 - L3 LINE CR1 -175 1402 1341 1812 194 94 0 chr6 103965735 103966117 -78449125 + MSTB1 LTR MaLR 15 432 0 500 222 108 119 chr6 103966392 103966577 -78448665 - MER5A DNA MER1_type -6 183 1 334 221 90 0 chr6 103968489 103968611 -78446631 + MER69 DNA AcHobo 2382 2514 -12 338 266 133 44 chr6 103969766 103969924 -78445318 - MIR SINE MIR -25 237 66 258 32 0 0 chr6 103970412 103970443 -78444799 + (TG)n Simple_repeat Simple_repeat 2 32 0 236 293 108 64 chr6 103970445 103970602 -78444640 - MIR SINE MIR -14 248 85 1807 180 39 49 chr6 103970602 103970990 -78444252 + MLT1B LTR MaLR 1 384 -6 21 36 0 0 chr6 103971225 103971253 -78443989 + AT_rich Low_complexity Low_complexity 1 28 0 2900 48 0 0 chr6 103971875 103972247 -78442995 - L1P2 LINE L1 -521 5634 5263 1035 324 100 53 chr6 103972275 103972936 -78442306 + L2 LINE L2 2261 2952 -362 1281 191 0 16 chr6 103972936 103973192 -78442050 - L1M4 LINE L1 -1163 4983 4732 188 379 0 0 chr6 103973447 103973505 -78441737 + L2 LINE L2 3187 3244 -28 897 238 0 5 chr6 103973528 103973734 -78441508 - L1M4 LINE L1 -2086 4060 3856 30 27 0 0 chr6 103973986 103974023 -78441219 + AT_rich Low_complexity Low_complexity 1 37 0 319 210 31 43 chr6 103974067 103974229 -78441013 + (TA)n Simple_repeat Simple_repeat 1 160 0 559 188 40 34 chr6 103974327 103974476 -78440766 - L1MA9 LINE L1 -153 6159 6010 1480 196 11 7 chr6 103974723 103975008 -78440234 - AluJo SINE Alu -26 286 1 309 197 15 0 chr6 103975458 103975524 -78439718 - L1MC4 LINE L1 0 8042 7976 8040 168 99 21 chr6 103975668 103978478 -78436764 + L1PBa LINE L1 928 3952 -2910 261 0 0 0 chr6 103981199 103981228 -78434014 + (A)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr6 103984231 103984253 -78430989 + (T)n Simple_repeat Simple_repeat 1 22 0 2003 161 20 13 chr6 103984998 103985382 -78429860 - MLT2A2 LTR ERVL -149 304 1 38 51 0 0 chr6 103986479 103986538 -78428704 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr6 103987155 103987179 -78428063 + AT_rich Low_complexity Low_complexity 1 24 0 4584 177 22 45 chr6 103987308 103988325 -78426917 - L1MA9 LINE L1 0 6312 5320 1027 101 7 0 chr6 103988326 103988475 -78426767 - L1PA10 LINE L1 0 6168 6019 430 209 0 18 chr6 103988646 103988756 -78426486 - L1MA9 LINE L1 -815 5331 5224 1865 179 65 43 chr6 103988761 103989253 -78425989 - L1MA9 LINE L1 -1395 4751 4249 1297 81 17 0 chr6 103989254 103989428 -78425814 - AluY SINE Alu -15 296 120 7775 230 54 31 chr6 103989535 103989907 -78425335 - L1M4c LINE L1 -1518 4864 4502 1556 183 0 13 chr6 103989907 103990207 -78425035 - AluY SINE Alu -14 297 2 7775 230 54 31 chr6 103990207 103991913 -78423329 - L1M4c LINE L1 -1880 4502 2837 2491 65 0 0 chr6 103991913 103992223 -78423019 + AluY SINE Alu 1 310 -1 360 0 0 0 chr6 103992223 103992263 -78422979 + (TA)n Simple_repeat Simple_repeat 2 41 0 7775 230 54 31 chr6 103992263 103992611 -78422631 - L1M4c LINE L1 -3544 2838 2379 249 286 14 0 chr6 103992615 103992685 -78422557 + Tigger5 DNA MER2_type 4 74 -2249 1104 234 54 27 chr6 103992686 103993057 -78422185 - L1M4c LINE L1 -4876 1508 1128 240 187 110 55 chr6 103993072 103993163 -78422079 - L1MDa LINE L1 -3908 2632 2537 2338 242 52 21 chr6 103993167 103994377 -78420865 - L1MDa LINE L1 -4762 1709 332 195 42 0 0 chr6 103995305 103995329 -78419913 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 71 0 0 chr6 103995850 103995892 -78419350 + AT_rich Low_complexity Low_complexity 1 42 0 546 310 79 70 chr6 103996135 103996603 -78418639 - L2 LINE L2 -1501 1813 1342 499 292 60 22 chr6 103996663 103996848 -78418394 - L1MDa LINE L1 -6329 211 20 9228 38 0 1 chr6 103999114 104001015 -78414227 - L1PA3 LINE L1 -3 6152 4254 614 74 0 0 chr6 104001151 104001232 -78414010 - L1P LINE L1 -1517 4629 4549 12073 39 0 1 chr6 104001232 104002723 -78412519 + L1P LINE L1 3055 4544 -1602 248 312 29 77 chr6 104003454 104003624 -78411618 + MIR3 SINE MIR 35 196 -12 2556 149 15 31 chr6 104004547 104005002 -78410240 + MER83 LTR ERV1 1 448 0 275 229 46 83 chr6 104005266 104005375 -78409867 + MIR SINE MIR 88 192 -70 29 47 0 0 chr6 104005521 104005564 -78409678 + AT_rich Low_complexity Low_complexity 1 43 0 1567 201 0 7 chr6 104007830 104008119 -78407123 + AluJo SINE Alu 1 287 -25 3620 148 60 3 chr6 104008555 104009550 -78405692 + L1PA16 LINE L1 4836 5885 -281 2086 148 45 8 chr6 104009834 104010211 -78405031 + L1PA16 LINE L1 5767 6157 -9 290 174 29 0 chr6 104010244 104010313 -78404929 - L1MC4 LINE L1 -845 7197 7127 1631 193 30 25 chr6 104010570 104010932 -78404310 + MLT1A1 LTR MaLR 2 365 0 252 311 189 8 chr6 104011637 104011769 -78403473 - MIR SINE MIR -5 257 102 547 292 104 0 chr6 104012006 104012160 -78403082 + MER5B DNA MER1_type 1 170 -8 717 314 26 34 chr6 104012954 104013218 -78402024 + MIR SINE MIR 1 262 0 23 54 0 0 chr6 104013379 104013416 -78401826 + AT_rich Low_complexity Low_complexity 1 37 0 1082 199 167 78 chr6 104014293 104014356 -78400886 - MER67D LTR ERV1 0 514 458 3803 182 53 4 chr6 104014356 104015050 -78400192 + MER44D DNA MER2_type 2 601 -4 1082 199 167 78 chr6 104015050 104015458 -78399784 - MER67D LTR ERV1 -56 458 1 205 333 59 37 chr6 104015972 104016107 -78399135 + MER5B DNA MER1_type 2 139 -39 * 338 259 252 0 chr6 104016101 104016248 -78398994 + MER5A DNA MER1_type 6 189 0 318 289 10 65 chr6 104017216 104017417 -78397825 + L1MCa LINE L1 2 191 -6235 1158 266 92 34 chr6 104017793 104018606 -78396636 + L1MCa LINE L1 302 1171 -4890 2282 123 19 3 chr6 104018741 104019107 -78396135 - L1PA16 LINE L1 -8 6158 5787 27 49 0 0 chr6 104020120 104020161 -78395081 + AT_rich Low_complexity Low_complexity 1 41 0 35 98 0 0 chr6 104020256 104020368 -78394874 + AT_rich Low_complexity Low_complexity 1 112 0 306 73 0 0 chr6 104020478 104020519 -78394723 + (CA)n Simple_repeat Simple_repeat 2 42 0 2007 175 35 45 chr6 104021374 104021796 -78393446 + Tigger2a DNA MER2_type 3 420 -14 423 271 93 0 chr6 104021874 104022014 -78393228 - MIR SINE MIR 0 262 110 237 348 59 0 chr6 104022487 104022622 -78392620 - HAL1 LINE L1 -1837 670 528 1121 220 51 57 chr6 104022827 104023199 -78392043 - MLT1A2 LTR MaLR -1 373 4 443 147 0 0 chr6 104023243 104023311 -78391931 - L1MC4a LINE L1 -226 7582 7515 2020 141 34 37 chr6 104023314 104023688 -78391554 + THE1C LTR MaLR 1 380 -48 2787 92 25 5 chr6 104023688 104024088 -78391154 - L1PA10 LINE L1 -5 6163 5756 2020 141 34 37 chr6 104024088 104024137 -78391105 + THE1C LTR MaLR 380 428 0 1958 241 105 24 chr6 104024147 104024773 -78390469 - L1MC4a LINE L1 -302 7506 6830 636 246 0 0 chr6 104024824 104024946 -78390296 + AluJb SINE Alu 166 287 -25 345 175 0 0 chr6 104024956 104025019 -78390223 - L1MC3 LINE L1 -47 7738 7676 2113 149 28 25 chr6 104025019 104025382 -78389860 - THE1B LTR MaLR 0 364 1 3678 73 0 10 chr6 104025382 104025864 -78389378 - THE1B-int LTR MaLR 0 1580 1104 665 169 15 15 chr6 104025991 104026127 -78389115 + AluJb SINE Alu 162 297 -15 2856 231 64 47 chr6 104026128 104026306 -78388936 - L1MC3 LINE L1 -1438 6347 6173 1478 218 23 13 chr6 104026306 104026609 -78388633 - AluJo SINE Alu -6 306 1 2856 231 64 47 chr6 104026609 104027321 -78387921 - L1MC3 LINE L1 -1612 6173 5442 1421 218 104 45 chr6 104027348 104027382 -78387860 - MLT1C LTR MaLR -2 465 434 2294 45 7 7 chr6 104027382 104027672 -78387570 + AluY SINE Alu 1 290 -21 1421 218 104 45 chr6 104027672 104028060 -78387182 - MLT1C LTR MaLR -33 434 18 1109 274 63 60 chr6 104028060 104029106 -78386136 - L1MEc LINE L1 -3625 2590 1581 791 304 58 37 chr6 104029198 104029633 -78385609 - L1MC3 LINE L1 -1186 4960 4536 213 65 0 0 chr6 104029633 104029664 -78385578 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1001 26 0 0 chr6 104029664 104029781 -78385461 - L1PA4 LINE L1 -18 6137 6021 2121 73 0 0 chr6 104029781 104030055 -78385187 - AluY SINE Alu -37 274 1 791 304 58 37 chr6 104030055 104030410 -78384832 - L1MC3 LINE L1 -1609 4537 4151 408 303 144 11 chr6 104030588 104030808 -78384434 - L1 LINE L1 -2223 3923 3654 2454 111 7 25 chr6 104030808 104031212 -78384030 - L1PA13 LINE L1 0 6163 5767 408 303 144 11 chr6 104031212 104031302 -78383940 - L1 LINE L1 -2492 3654 3577 205 264 0 45 chr6 104031678 104031788 -78383454 + T-rich Low_complexity Low_complexity 1 105 0 231 267 81 29 chr6 104031893 104032065 -78383177 - L1 LINE L1 -3689 2457 2277 2106 173 134 7 chr6 104032596 104033006 -78382236 + MLT2B2 LTR ERVL 54 515 0 402 232 0 0 chr6 104033010 104033092 -78382150 - MER58A DNA MER1_type 0 128 47 250 303 11 22 chr6 104033120 104033209 -78382033 - HAL1b LINE L1 -750 598 511 7003 45 1 1 chr6 104033792 104035266 -78379976 - L1PA5 LINE L1 -1 6153 4687 684 60 0 0 chr6 104035266 104035349 -78379893 + THE1C LTR MaLR 293 375 0 4945 153 45 9 chr6 104036673 104037566 -78377676 - L1MA8 LINE L1 -1 6290 5366 7556 20 2 0 chr6 104038767 104039849 -78375393 + L1PA3 LINE L1 5083 6166 0 21 67 0 0 chr6 104041819 104041849 -78373393 + AT_rich Low_complexity Low_complexity 1 30 0 290 313 194 6 chr6 104041927 104042087 -78373155 + MIR SINE MIR 17 206 -56 562 275 116 39 chr6 104042096 104042554 -78372688 - L1M4 LINE L1 -2865 3281 2789 25 51 0 0 chr6 104042874 104042913 -78372329 + AT_rich Low_complexity Low_complexity 1 39 0 2333 76 0 19 chr6 104043650 104043967 -78371275 - AluY SINE Alu 0 311 1 1262 244 44 19 chr6 104044841 104045160 -78370082 - L1ME LINE L1 -402 5764 5438 413 57 0 0 chr6 104047233 104047286 -78367956 + MADE1 DNA Mariner 28 80 0 2242 135 42 20 chr6 104047919 104048275 -78366967 - THE1B LTR MaLR 0 364 1 510 352 83 26 chr6 104051088 104051557 -78363685 + L2 LINE L2 2818 3313 0 2225 120 7 0 chr6 104052152 104052461 -78362781 - AluSq SINE Alu -2 311 1 26 30 0 0 chr6 104053046 104053079 -78362163 + AT_rich Low_complexity Low_complexity 1 33 0 489 219 105 0 chr6 104053291 104053405 -78361837 - FLAM_C SINE Alu -12 131 6 3015 163 57 18 chr6 104053880 104054481 -78360761 + L1MC1 LINE L1 5710 6333 0 274 297 59 54 chr6 104054482 104054704 -78360538 + L1MC4 LINE L1 4739 4961 -1185 22 70 0 0 chr6 104054826 104054869 -78360373 + AT_rich Low_complexity Low_complexity 1 43 0 1750 243 127 3 chr6 104054943 104055536 -78359706 + L1MC4 LINE L1 5254 5919 -1889 22 35 0 0 chr6 104055593 104055622 -78359620 + AT_rich Low_complexity Low_complexity 1 29 0 874 295 101 35 chr6 104055852 104056632 -78358610 + L1MC4 LINE L1 7211 8042 0 629 339 72 24 chr6 104057058 104057477 -78357765 - MLT1K LTR MaLR -148 440 2 387 312 26 13 chr6 104058472 104058626 -78356616 - MLT1I LTR MaLR -235 174 19 433 243 28 0 chr6 104058862 104058969 -78356273 - MER58C DNA MER1_type 0 215 106 247 294 0 49 chr6 104059004 104059106 -78356136 - MER58C DNA MER1_type -107 108 12 499 284 76 73 chr6 104059515 104059832 -78355410 - L1MDb LINE L1 -5315 1228 911 191 306 48 16 chr6 104059881 104059943 -78355299 - MER5A DNA MER1_type -63 126 63 225 343 33 82 chr6 104060387 104060690 -78354552 - L1MDb LINE L1 -6235 305 18 2468 59 3 0 chr6 104060913 104061218 -78354024 - L1P3 LINE L1 -450 5704 5399 1053 80 13 0 chr6 104061218 104061367 -78353875 + L1PA7 LINE L1 6002 6153 -1 2225 77 0 26 chr6 104061682 104061992 -78353250 - AluY SINE Alu -9 302 1 247 328 41 31 chr6 104065219 104065509 -78349733 - L1M4 LINE L1 -934 5212 4920 2289 73 0 29 chr6 104065581 104065894 -78349348 - AluY SINE Alu -7 304 1 292 272 29 10 chr6 104066050 104066153 -78349089 - L1M4 LINE L1 -1542 4604 4500 1630 175 7 24 chr6 104066252 104066544 -78348698 - AluJb SINE Alu -21 291 5 216 0 0 0 chr6 104066632 104066656 -78348586 + (T)n Simple_repeat Simple_repeat 1 24 0 925 192 21 10 chr6 104066837 104067030 -78348212 - MER3 DNA MER1_type -1 208 14 1322 245 90 56 chr6 104067107 104067725 -78347517 - MLT1E3 LTR MaLR 0 624 1 310 324 25 29 chr6 104067775 104068013 -78347229 - L1M4 LINE L1 -2122 4024 3788 325 248 0 96 chr6 104068102 104068227 -78347015 - L1MC4 LINE L1 -1339 6703 6591 352 314 129 40 chr6 104068297 104068545 -78346697 + L1MEd LINE L1 647 916 -5289 330 296 51 23 chr6 104068624 104068800 -78346442 + L1MEd LINE L1 1041 1221 -4984 1055 246 92 27 chr6 104068858 104069196 -78346046 - MLT1C LTR MaLR -29 438 79 3111 143 16 13 chr6 104069224 104069771 -78345471 - L1PB3 LINE L1 -2 6152 5604 46 19 0 0 chr6 104069908 104069961 -78345281 + AT_rich Low_complexity Low_complexity 1 53 0 261 305 51 0 chr6 104069979 104070097 -78345145 + L1MEd LINE L1 1362 1485 -4730 457 248 94 74 chr6 104070385 104070736 -78344506 - L1MEd LINE L1 -4867 1252 895 324 310 48 7 chr6 104070746 104070891 -78344351 - L1MEd LINE L1 -5294 825 675 409 305 69 0 chr6 104071131 104071262 -78343980 - L1MEd LINE L1 -5734 385 246 394 265 48 24 chr6 104071292 104071458 -78343784 - L1MEd LINE L1 -5947 172 3 3223 156 7 38 chr6 104071722 104072279 -78342963 - MER44D DNA MER2_type -7 598 4 22 0 0 0 chr6 104072464 104072486 -78342756 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr6 104072738 104072767 -78342475 + AT_rich Low_complexity Low_complexity 1 29 0 1444 129 8 17 chr6 104073183 104073424 -78341818 + AluSg/x SINE Alu 73 311 -1 1160 258 93 0 chr6 104074264 104074555 -78340687 - 7SLRNA srpRNA srpRNA -2 318 1 1854 142 10 10 chr6 104076419 104076730 -78338512 + AluSq SINE Alu 1 311 -2 203 375 23 0 chr6 104077821 104077909 -78337333 - L2 LINE L2 -44 3228 3139 242 281 0 0 chr6 104078699 104078756 -78336486 - L2 LINE L2 -668 2646 2590 29 28 0 0 chr6 104079304 104079340 -78335902 + AT_rich Low_complexity Low_complexity 1 36 0 550 303 90 0 chr6 104079695 104079906 -78335336 + MIR SINE MIR 18 247 -15 306 342 34 14 chr6 104079953 104080273 -78334969 + L1M1 LINE L1 2702 3104 -4642 272 300 100 7 chr6 104080657 104080807 -78334435 + L1MEd LINE L1 2240 2403 -3993 303 252 19 19 chr6 104080868 104080971 -78334271 + L1MEd LINE L1 2541 2643 -3572 526 379 40 9 chr6 104081788 104082136 -78333106 + HERVL LTR ERVL 4126 4484 -1170 262 306 62 21 chr6 104082272 104082416 -78332826 + HERVL LTR ERVL 4656 4805 -849 270 297 54 36 chr6 104082471 104082582 -78332660 + HERVL LTR ERVL 4911 5023 -631 2366 198 35 69 chr6 104082991 104083644 -78331598 + L1MB8 LINE L1 5539 6169 -9 22 0 0 0 chr6 104083773 104083795 -78331447 + AT_rich Low_complexity Low_complexity 1 22 0 290 228 0 0 chr6 104083834 104083891 -78331351 + L1MB3 LINE L1 5962 6018 -165 575 154 26 17 chr6 104083899 104084016 -78331226 - L1MA10 LINE L1 -1 6333 6216 832 126 7 0 chr6 104084035 104084170 -78331072 + L1MB3 LINE L1 6048 6183 0 253 202 0 24 chr6 104084173 104084257 -78330985 + GA-rich Low_complexity Low_complexity 3 84 0 24 0 0 0 chr6 104084319 104084343 -78330899 + AT_rich Low_complexity Low_complexity 1 24 0 227 381 157 0 chr6 104085366 104085513 -78329729 + MIR3 SINE MIR 32 201 -7 23 0 0 0 chr6 104085815 104085838 -78329404 + AT_rich Low_complexity Low_complexity 1 23 0 541 284 147 44 chr6 104086932 104087456 -78327786 - L2 LINE L2 0 3313 2742 563 240 8 0 chr6 104087456 104087577 -78327665 + MER94 DNA DNA 1 122 -12 604 339 57 38 chr6 104087608 104087974 -78327268 - L2 LINE L2 -575 2739 2367 2108 112 10 0 chr6 104089158 104089452 -78325790 + AluSx SINE Alu 1 297 -15 384 367 28 0 chr6 104089611 104089791 -78325451 + MIR SINE MIR 72 256 -6 27 0 0 0 chr6 104089901 104089928 -78325314 + AT_rich Low_complexity Low_complexity 1 27 0 245 271 0 0 chr6 104090015 104090085 -78325157 + (TA)n Simple_repeat Simple_repeat 2 71 0 2884 113 30 3 chr6 104090479 104091063 -78324179 - L1PA11 LINE L1 -469 5705 5105 3157 106 13 0 chr6 104091064 104091526 -78323716 + L1PA11 LINE L1 5705 6172 -2 1330 168 48 39 chr6 104091526 104091836 -78323406 + L1MB8 LINE L1 5860 6172 -6 1906 187 6 11 chr6 104092209 104092572 -78322670 - MLT1A1 LTR MaLR -1 364 4 369 297 124 25 chr6 104092575 104092777 -78322465 - MIR SINE MIR -35 227 6 775 251 31 15 chr6 104093261 104093456 -78321786 + MLT1A1 LTR MaLR 168 365 0 344 297 109 35 chr6 104093457 104094181 -78321061 - L1MC/D LINE L1 -743 5403 4795 437 253 98 114 chr6 104094274 104094519 -78320723 + MIR SINE MIR 12 252 -10 212 292 83 31 chr6 104096189 104096285 -78318957 - MIR SINE MIR -150 112 12 464 0 18 0 chr6 104096365 104096421 -78318821 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 327 353 0 0 chr6 104097840 104097962 -78317280 - HAL1 LINE L1 -660 1847 1726 340 261 160 0 chr6 104098006 104098125 -78317117 - HAL1 LINE L1 -1788 719 582 425 333 74 45 chr6 104098209 104098496 -78316746 - HAL1 LINE L1 -2029 478 178 4176 96 6 86 chr6 104098496 104099218 -78316024 - MER4A LTR ERV1 0 664 1 425 333 74 45 chr6 104099218 104099266 -78315976 - HAL1 LINE L1 -2329 178 133 180 111 0 0 chr6 104099467 104099494 -78315748 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 326 318 102 25 chr6 104099920 104100203 -78315039 + L2 LINE L2 2976 3280 -33 242 316 59 59 chr6 104100676 104100863 -78314379 - L2 LINE L2 -781 2533 2347 26 50 0 0 chr6 104101774 104101814 -78313428 + AT_rich Low_complexity Low_complexity 1 40 0 468 262 34 56 chr6 104102276 104102509 -78312733 + L1MC4 LINE L1 6803 7030 -1012 357 259 99 22 chr6 104103172 104103404 -78311838 + L1MEc LINE L1 1232 1481 -4915 1345 125 125 96 chr6 104103433 104103777 -78311465 + Tigger3b DNA MER2_type 59 412 -819 6848 229 81 39 chr6 104103781 104104209 -78311033 + L1MA9 LINE L1 2689 3098 -4467 334 80 20 0 chr6 104104209 104104259 -78310983 - MADE1 DNA Mariner -1 79 29 6848 229 81 39 chr6 104104259 104107335 -78307907 + L1MA9 LINE L1 3098 6483 -1082 7645 23 3 3 chr6 104107347 104108515 -78306727 - L1PA4 LINE L1 -8 6147 4982 2295 196 19 38 chr6 104108493 104109296 -78305946 + L1MA9 LINE L1 6476 7214 -517 * 219 114 0 0 chr6 104109296 104109331 -78305911 + (CA)n Simple_repeat Simple_repeat 2 36 0 2295 196 19 38 chr6 104109331 104109840 -78305402 + L1MA9 LINE L1 7214 7731 0 199 342 84 32 chr6 104109884 104110074 -78305168 - L2 LINE L2 -1529 1785 1586 731 155 0 109 chr6 104110576 104110750 -78304492 + MER46A DNA MER2_type 1 155 -81 258 32 0 0 chr6 104110796 104110827 -78304415 + (CA)n Simple_repeat Simple_repeat 2 32 0 1373 191 38 46 chr6 104111448 104111831 -78303411 + MLT1C LTR MaLR 1 388 -2 216 362 40 20 chr6 104112016 104112165 -78303077 - L2 LINE L2 -1870 1444 1293 35 0 0 0 chr6 104112296 104112331 -78302911 + AT_rich Low_complexity Low_complexity 1 35 0 186 246 0 0 chr6 104113041 104113102 -78302140 + (TA)n Simple_repeat Simple_repeat 2 62 0 583 309 58 5 chr6 104113306 104113494 -78301748 + MIR SINE MIR 4 201 -61 1156 215 62 4 chr6 104113504 104113760 -78301482 + AluJo SINE Alu 24 294 -18 2112 113 7 0 chr6 104113770 104114062 -78301180 + AluSc SINE Alu 1 294 -15 25 0 0 0 chr6 104114102 104114127 -78301115 + AT_rich Low_complexity Low_complexity 1 25 0 201 372 47 0 chr6 104114139 104114225 -78301017 + L2 LINE L2 2397 2486 -828 584 339 40 0 chr6 104114720 104114944 -78300298 - MIR SINE MIR -28 234 2 210 185 0 56 chr6 104115092 104115146 -78300096 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 590 174 10 0 chr6 104115346 104115444 -78299798 - L1M2 LINE L1 -565 5726 5628 207 0 0 0 chr6 104115964 104115987 -78299255 + (T)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr6 104116000 104116023 -78299219 + AT_rich Low_complexity Low_complexity 1 23 0 14728 24 1 0 chr6 104116036 104118531 -78296711 - L1PA2 LINE L1 0 6155 3660 12502 30 1 0 chr6 104118531 104120053 -78295189 + L1PA2 LINE L1 2146 3668 -2478 30 27 0 0 chr6 104120276 104120313 -78294929 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 104121579 104121607 -78293635 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 104121630 104121662 -78293580 + AT_rich Low_complexity Low_complexity 1 32 0 2568 52 0 3 chr6 104122018 104122324 -78292918 + AluY SINE Alu 1 305 -6 1867 161 0 3 chr6 104122645 104122949 -78292293 - AluJb SINE Alu -8 304 2 309 290 35 28 chr6 104123329 104123474 -78291768 + LTR67 LTR ERVL 405 550 -7 952 243 60 4 chr6 104123874 104124125 -78291117 + MLT1J1 LTR MaLR 44 308 -138 1696 175 0 4 chr6 104124186 104124466 -78290776 + AluJb SINE Alu 1 279 -33 612 0 0 0 chr6 104124469 104124537 -78290705 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 189 0 0 0 chr6 104124547 104124568 -78290674 + (T)n Simple_repeat Simple_repeat 1 21 0 1620 197 43 0 chr6 104125256 104125555 -78289687 - AluJo SINE Alu 0 312 1 4505 77 31 5 chr6 104125620 104126625 -78288617 + MER11A LTR ERVK 1 1266 0 209 310 78 62 chr6 104126870 104126999 -78288243 + L2 LINE L2 3137 3267 -5 284 189 42 11 chr6 104129285 104129380 -78285862 + (TA)n Simple_repeat Simple_repeat 1 98 0 1605 218 29 5 chr6 104129389 104129775 -78285467 + L1MB4 LINE L1 5786 6180 0 27 0 0 0 chr6 104130151 104130178 -78285064 + AT_rich Low_complexity Low_complexity 1 27 0 1795 126 4 18 chr6 104131079 104131357 -78283885 + L1PB1 LINE L1 5520 5793 -358 224 164 30 30 chr6 104131357 104131424 -78283818 + (TA)n Simple_repeat Simple_repeat 1 67 0 2121 116 42 17 chr6 104131427 104131439 -78283803 + L1PB1 LINE L1 5785 5795 -356 243 0 0 0 chr6 104131439 104131466 -78283776 + (CA)n Simple_repeat Simple_repeat 1 27 0 2121 116 42 17 chr6 104131466 104131808 -78283434 + L1PB1 LINE L1 5795 6148 -3 3369 196 119 90 chr6 104132220 104132787 -78282455 - L1MC3 LINE L1 -25 7760 7211 288 262 24 24 chr6 104132787 104132871 -78282371 - MLT1F1 LTR MaLR -443 124 41 3369 196 119 90 chr6 104132871 104133339 -78281903 - L1MC3 LINE L1 -574 7211 6610 1331 230 36 39 chr6 104133350 104133706 -78281536 - MER82 DNA MER2_type -57 596 242 240 137 0 0 chr6 104133715 104133766 -78281476 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 348 164 0 0 chr6 104133777 104133832 -78281410 + L1MC3 LINE L1 6887 6941 -844 226 190 152 13 chr6 104133845 104133924 -78281318 + L1MC4 LINE L1 6614 6703 -1339 1108 209 8 8 chr6 104133929 104134173 -78281069 - MER82 DNA MER2_type -408 245 2 1079 127 142 79 chr6 104134173 104134440 -78280802 - L1MC3 LINE L1 -1177 6608 6325 4824 97 5 0 chr6 104134453 104135113 -78280129 - THE1B-int LTR MaLR -917 663 1 2012 139 54 31 chr6 104135116 104135469 -78279773 - THE1B LTR MaLR -3 361 1 8639 246 17 9 chr6 104135481 104137793 -78277449 + L1PA15 LINE L1 1615 3944 -2202 1805 236 178 38 chr6 104137793 104138679 -78276563 - MER52A LTR ERV1 0 1278 10 228 276 17 17 chr6 104139579 104139637 -78275605 - MER52A LTR ERV1 -1697 58 1 5847 182 35 7 chr6 104139638 104141802 -78273440 + L1PA15 LINE L1 3942 6164 -1 375 276 16 24 chr6 104142023 104142150 -78273092 + MLT1J LTR MaLR 39 164 -347 961 258 47 65 chr6 104142217 104142647 -78272595 + MLT2B1 LTR ERVL 3 424 -40 242 108 77 62 chr6 104142670 104142735 -78272507 + MLT2C1 LTR ERVL 332 397 0 1119 208 65 11 chr6 104142739 104143132 -78272110 + MLT1-int LTR MaLR 5 554 -817 4066 51 6 0 chr6 104144341 104144853 -78270389 + L1PA7 LINE L1 5639 6153 -1 2593 171 25 0 chr6 104144853 104145330 -78269912 + L1MC1 LINE L1 5841 6332 -1 24 53 0 0 chr6 104145346 104145384 -78269858 + AT_rich Low_complexity Low_complexity 1 38 0 461 273 0 43 chr6 104145631 104145770 -78269472 - MIR SINE MIR -10 252 120 243 238 25 25 chr6 104145853 104145933 -78269309 - L1P LINE L1 -2371 3775 3696 258 270 24 24 chr6 104146131 104146257 -78268985 - L1P LINE L1 -3748 2398 2273 1772 160 17 7 chr6 104146461 104146473 -78268769 - AluJb SINE Alu -15 297 287 297 0 0 0 chr6 104146473 104146506 -78268736 + (TG)n Simple_repeat Simple_repeat 2 34 0 1772 160 17 7 chr6 104146506 104146786 -78268456 - AluJb SINE Alu -25 287 2 591 307 46 56 chr6 104147241 104147844 -78267398 - HAL1b LINE L1 -697 651 55 243 0 0 0 chr6 104148698 104148725 -78266517 + (T)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr6 104149290 104149313 -78265929 + AT_rich Low_complexity Low_complexity 1 23 0 330 313 69 8 chr6 104149379 104149510 -78265732 + L2 LINE L2 3171 3309 -4 275 377 0 0 chr6 104152000 104152130 -78263112 + C-rich Low_complexity Low_complexity 1 130 0 21 71 0 0 chr6 104154818 104154860 -78260382 + AT_rich Low_complexity Low_complexity 1 42 0 229 303 61 0 chr6 104155998 104156064 -78259178 - MIR SINE MIR -103 105 36 22 0 0 0 chr6 104156570 104156592 -78258650 + AT_rich Low_complexity Low_complexity 1 22 0 197 301 81 16 chr6 104157084 104157207 -78258035 - L2 LINE L2 -20 3293 3163 185 0 40 0 chr6 104157429 104157454 -78257788 + (TTG)n Simple_repeat Simple_repeat 2 27 0 278 227 0 107 chr6 104158583 104158658 -78256584 - HERVL68 LTR ERVL -594 2443 2377 7967 273 48 52 chr6 104158777 104161628 -78253614 - HERVL68 LTR ERVL -2605 2925 88 421 182 52 0 chr6 104161852 104161929 -78253313 - HERVL68 LTR ERVL -5447 83 3 1418 223 110 21 chr6 104161936 104162354 -78252888 - LTR40b LTR ERVL -4 458 4 210 402 40 69 chr6 104162847 104163123 -78252119 + L2 LINE L2 3004 3271 -1 236 196 20 0 chr6 104164490 104164541 -78250701 + MADE1 DNA Mariner 1 52 -28 834 290 36 69 chr6 104165096 104165589 -78249653 + L1ME1 LINE L1 17 493 -5930 929 251 68 34 chr6 104165680 104166069 -78249173 + L1ME1 LINE L1 1184 1584 -4891 643 272 60 23 chr6 104166083 104166348 -78248894 + L1ME1 LINE L1 3202 3476 -3465 2747 235 66 31 chr6 104166348 104167274 -78247968 + L1ME1 LINE L1 6010 7128 -1 322 214 137 8 chr6 104167927 104168058 -78247184 + MER5C DNA MER1_type 176 323 -1 257 241 0 19 chr6 104169986 104170094 -78245148 + (CATATA)n Simple_repeat Simple_repeat 6 111 0 313 266 13 0 chr6 104171349 104171428 -78243814 + GA-rich Low_complexity Low_complexity 1 80 0 33 0 0 0 chr6 104171765 104171798 -78243444 + AT_rich Low_complexity Low_complexity 1 33 0 257 116 39 47 chr6 104171798 104171927 -78243315 + (TTATA)n Simple_repeat Simple_repeat 1 128 0 * 454 97 24 55 chr6 104171907 104172072 -78243170 + (TATAA)n Simple_repeat Simple_repeat 3 162 0 422 133 12 52 chr6 104172089 104172262 -78242980 + (TATAA)n Simple_repeat Simple_repeat 3 168 0 387 259 252 0 chr6 104173007 104173154 -78242088 - MER5A DNA MER1_type -2 187 4 330 308 64 6 chr6 104173374 104173531 -78241711 - MIR SINE MIR -63 145 1 427 366 87 46 chr6 104174766 104175352 -78239890 + L2 LINE L2 2662 3271 -1 372 308 224 30 chr6 104175605 104175998 -78239244 + L2 LINE L2 2844 3312 -1 206 183 33 0 chr6 104176111 104176171 -78239071 + CT-rich Low_complexity Low_complexity 3 64 0 22 0 0 0 chr6 104176250 104176272 -78238970 + AT_rich Low_complexity Low_complexity 1 22 0 226 304 167 59 chr6 104177305 104177407 -78237835 + L2 LINE L2 3127 3239 -33 24 0 0 0 chr6 104178547 104178571 -78236671 + AT_rich Low_complexity Low_complexity 1 24 0 400 298 0 0 chr6 104178914 104179018 -78236224 - MIR SINE MIR -58 204 101 2166 49 31 10 chr6 104179223 104179511 -78235731 - AluY SINE Alu -15 296 3 26 0 0 0 chr6 104180875 104180901 -78234341 + AT_rich Low_complexity Low_complexity 1 26 0 206 308 66 0 chr6 104181830 104181921 -78233321 + MER91A DNA MER1_type 20 116 -80 475 213 121 54 chr6 104182297 104182374 -78232868 + MER112 DNA MER1_type 1 71 -185 210 118 0 0 chr6 104182374 104182408 -78232834 + (CA)n Simple_repeat Simple_repeat 2 35 0 475 213 121 54 chr6 104182408 104182569 -78232673 + MER112 DNA MER1_type 71 255 -1 354 293 67 56 chr6 104182590 104182912 -78232330 + L2 LINE L2 2924 3301 -12 308 219 98 12 chr6 104183236 104183318 -78231924 - MER69 DNA AcHobo -3 2523 2435 358 319 213 0 chr6 104183325 104183513 -78231729 - MER69 DNA AcHobo -2298 228 1 2075 235 21 12 chr6 104183997 104184478 -78230764 - MLT1D LTR MaLR 0 505 21 686 298 88 13 chr6 104185024 104185252 -78229990 + MIR SINE MIR 14 258 -4 312 305 130 15 chr6 104186018 104186149 -78229093 - MIR SINE MIR -5 257 112 1272 244 22 4 chr6 104186167 104186438 -78228804 - MER45B DNA AcHobo -764 276 1 223 279 165 0 chr6 104186623 104186702 -78228540 - MER5C DNA MER1_type 0 324 233 401 168 177 26 chr6 104186721 104186834 -78228408 - MER5C DNA MER1_type -194 130 1 1500 220 7 7 chr6 104187535 104187826 -78227416 + AluJo SINE Alu 1 291 -21 26 74 0 0 chr6 104187931 104187985 -78227257 + AT_rich Low_complexity Low_complexity 1 54 0 2493 130 3 8 chr6 104188123 104188500 -78226742 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr6 104189210 104189232 -78226010 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 104189314 104189336 -78225906 + AT_rich Low_complexity Low_complexity 1 22 0 2209 97 0 3 chr6 104189591 104189889 -78225353 + AluY SINE Alu 1 297 -14 26 50 0 0 chr6 104190021 104190061 -78225181 + AT_rich Low_complexity Low_complexity 1 40 0 307 328 8 56 chr6 104190352 104190477 -78224765 - L2 LINE L2 0 3272 3154 252 368 14 42 chr6 104190580 104190724 -78224518 - L2 LINE L2 0 3272 3133 480 291 20 39 chr6 104190870 104191073 -78224169 + MIR SINE MIR 64 262 0 316 300 78 78 chr6 104191239 104191672 -78223570 - L1M4 LINE L1 -2969 3177 2745 507 110 55 0 chr6 104191696 104191787 -78223455 - L1PA13 LINE L1 -2 6161 6066 231 36 0 0 chr6 104191833 104191861 -78223381 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 760 191 0 0 chr6 104191868 104192009 -78223233 - FLAM_C SINE Alu -2 141 1 924 164 36 0 chr6 104192767 104192932 -78222310 + FRAM SINE Alu 1 170 -6 1665 181 77 3 chr6 104193003 104193341 -78221901 + MER47A DNA MER2_type 4 366 0 184 345 35 0 chr6 104195729 104195787 -78219455 - L3 LINE CR1 -3 1574 1515 431 292 49 0 chr6 104195950 104196094 -78219148 - MARNA DNA Mariner -345 241 91 258 287 61 35 chr6 104195999 104196114 -78219128 + MARNA DNA Mariner 394 511 -75 * 2055 134 0 3 chr6 104196689 104197002 -78218240 - AluSx SINE Alu 0 312 1 969 115 0 0 chr6 104198226 104198365 -78216877 + L1PA7 LINE L1 6014 6152 -2 23 0 0 0 chr6 104198377 104198400 -78216842 + AT_rich Low_complexity Low_complexity 1 23 0 352 293 63 31 chr6 104198484 104198675 -78216567 + HAL1 LINE L1 2245 2441 -66 227 77 0 26 chr6 104198735 104198774 -78216468 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 284 269 43 0 chr6 104198833 104198926 -78216316 + HAL1b LINE L1 1252 1348 0 202 87 43 0 chr6 104198989 104199035 -78216207 + (CAA)n Simple_repeat Simple_repeat 1 48 0 2272 157 36 7 chr6 104199369 104199783 -78215459 - MSTB LTR MaLR 0 426 1 8393 188 10 17 chr6 104300340 104303154 -78112088 + L1PB2 LINE L1 3336 6143 -8 9346 190 20 8 chr6 104303157 104306254 -78108988 + L1PB3 LINE L1 3026 6152 -2 287 224 53 0 chr6 104306265 104306341 -78108901 - HAL1 LINE L1 -917 1590 1511 815 235 109 4 chr6 104306691 104306921 -78108321 - L1ME1 LINE L1 -10 6156 5903 1542 99 92 50 chr6 104306996 104307278 -78107964 + MER4C LTR ERV1 1 294 -171 1022 133 0 0 chr6 104307291 104307442 -78107800 - AluSg/x SINE Alu -4 308 158 23 54 0 0 chr6 104308000 104308037 -78107205 + AT_rich Low_complexity Low_complexity 1 37 0 1538 268 53 7 chr6 104308061 104308512 -78106730 - L1MC4 LINE L1 -141 7901 7430 4435 146 8 10 chr6 104308526 104309237 -78106005 - MER50 LTR ERV1 -23 711 2 280 200 17 0 chr6 104309240 104309300 -78105942 - L1MC4 LINE L1 -627 7415 7355 201 132 0 0 chr6 104309474 104309512 -78105730 + (CAAAT)n Simple_repeat Simple_repeat 5 42 0 1927 153 0 7 chr6 104309635 104309922 -78105320 + AluSx SINE Alu 1 285 -27 2531 135 47 21 chr6 104310021 104310448 -78104794 + LTR35 LTR ERV1 1 507 -111 237 33 0 0 chr6 104310448 104310478 -78104764 + (TC)n Simple_repeat Simple_repeat 1 30 0 2531 135 47 21 chr6 104310478 104310593 -78104649 + LTR35 LTR ERV1 507 618 0 186 266 25 51 chr6 104310644 104310723 -78104519 - MIR3 SINE MIR -131 77 1 529 373 11 15 chr6 104310789 104311049 -78104193 - MIR SINE MIR -2 260 2 198 0 0 0 chr6 104311110 104311132 -78104110 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 307 236 45 18 chr6 104313919 104314029 -78101213 - L1ME1 LINE L1 -333 5829 5717 238 301 78 13 chr6 104314577 104314730 -78100512 - L1ME1 LINE L1 -523 5647 5485 236 251 133 20 chr6 104314836 104315031 -78100211 - L1ME1 LINE L1 -807 5339 5123 28 0 0 0 chr6 104315068 104315096 -78100146 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr6 104315212 104315244 -78099998 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr6 104315274 104315306 -78099936 + AT_rich Low_complexity Low_complexity 1 32 0 2141 111 3 0 chr6 104315312 104315610 -78099632 - AluSg SINE Alu -11 299 1 2797 154 15 10 chr6 104315791 104316271 -78098971 + L1MB3 LINE L1 5368 5849 -334 383 222 119 0 chr6 104316697 104316823 -78098419 - MER50 LTR ERV1 -352 382 242 390 228 165 16 chr6 104316884 104317011 -78098231 - MER50 LTR ERV1 -579 155 10 399 235 107 37 chr6 104317122 104317309 -78097933 - L1M4 LINE L1 -3285 2861 2662 2883 168 6 2 chr6 104317459 104317954 -78097288 - LOR1a LTR ERV1 0 497 1 492 298 108 45 chr6 104318919 104319272 -78095970 + L2 LINE L2 2938 3312 -1 296 313 56 42 chr6 104319354 104319498 -78095744 + LTR50 LTR ERVL 38 183 -612 213 39 0 0 chr6 104319768 104319794 -78095448 + (TTG)n Simple_repeat Simple_repeat 2 27 0 361 318 24 8 chr6 104320127 104320253 -78094989 + HsTC2 DNA Tc2 15 142 -1756 1459 232 167 22 chr6 104320271 104320810 -78094432 + HsTC2 DNA Tc2 1282 1898 0 27 73 0 0 chr6 104320835 104320890 -78094352 + AT_rich Low_complexity Low_complexity 1 55 0 25 31 0 0 chr6 104322523 104322555 -78092687 + AT_rich Low_complexity Low_complexity 1 32 0 1617 174 53 10 chr6 104322856 104323155 -78092087 - AluJo SINE Alu 0 312 1 23 33 0 0 chr6 104323228 104323258 -78091984 + AT_rich Low_complexity Low_complexity 1 30 0 308 122 18 16 chr6 104323575 104323648 -78091594 - MLT2B1 LTR ERVL 0 515 451 207 162 0 0 chr6 104323652 104323689 -78091553 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 750 242 11 33 chr6 104323690 104323872 -78091370 - MLT2B1 LTR ERVL -40 480 303 1308 184 73 0 chr6 104323877 104324122 -78091120 + MSTB LTR MaLR 164 426 0 1844 171 153 18 chr6 104324460 104324899 -78090343 + MLT1D LTR MaLR 1 498 -7 2167 126 48 25 chr6 104326199 104326555 -78088687 - THE1B LTR MaLR 0 364 1 11081 119 2 0 chr6 104326555 104328131 -78087111 - THE1B-int LTR MaLR 0 1580 1 1368 157 10 41 chr6 104328134 104328417 -78086825 - THE1B LTR MaLR -3 361 1 283 193 97 26 chr6 104330218 104330332 -78084910 + L1M4 LINE L1 3732 3853 -2293 477 254 163 16 chr6 104330552 104330985 -78084257 + L1MC5 LINE L1 7260 7693 -268 3137 233 30 37 chr6 104330993 104332028 -78083214 + L1M4 LINE L1 3839 4866 -1280 1084 191 94 55 chr6 104332100 104332430 -78082812 + MER2 DNA MER2_type 2 344 0 28 71 0 0 chr6 104332516 104332572 -78082670 + AT_rich Low_complexity Low_complexity 1 56 0 27 110 0 0 chr6 104333858 104333976 -78081266 + AT_rich Low_complexity Low_complexity 1 118 0 32 57 0 0 chr6 104334221 104334274 -78080968 + AT_rich Low_complexity Low_complexity 1 53 0 841 147 0 32 chr6 104335649 104335806 -78079436 - L1MA9 LINE L1 -37 6275 6124 5812 99 30 8 chr6 104335956 104337464 -78077778 + L1PA14 LINE L1 4621 6159 -2 2044 110 0 0 chr6 104338625 104338897 -78076345 - AluSc SINE Alu -21 288 17 1855 202 42 16 chr6 104339129 104339510 -78075732 + MSTD LTR MaLR 6 396 0 462 346 17 50 chr6 104339842 104340082 -78075160 + MIR SINE MIR 26 257 -5 265 227 0 27 chr6 104340117 104340192 -78075050 - L1MD3 LINE L1 -8 8782 8710 987 210 31 36 chr6 104340192 104340416 -78074826 - MER58A DNA MER1_type 0 224 2 5991 233 91 66 chr6 104340419 104340840 -78074402 - L1MD3 LINE L1 -172 8618 8209 483 189 38 0 chr6 104340840 104340946 -78074296 - MLT1F1 LTR MaLR -457 110 1 5991 233 91 66 chr6 104340946 104341168 -78074074 - L1MD3 LINE L1 -581 8209 7994 198 71 0 0 chr6 104341168 104341196 -78074046 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 5991 233 91 66 chr6 104341196 104341633 -78073609 - L1MD3 LINE L1 -796 7994 7569 628 170 15 107 chr6 104341633 104341766 -78073476 - MER53 DNA DNA 0 189 80 2329 91 0 0 chr6 104341766 104342062 -78073180 + AluY SINE Alu 1 296 -15 628 170 15 107 chr6 104342062 104342134 -78073108 - MER53 DNA DNA -109 80 3 5991 233 91 66 chr6 104342134 104343580 -78071662 - L1MD3 LINE L1 -1221 7569 6160 2033 147 36 28 chr6 104343580 104343941 -78071301 + THE1B LTR MaLR 1 364 0 10868 108 19 0 chr6 104343941 104345491 -78069751 + THE1B-int LTR MaLR 1 1580 0 1846 161 56 37 chr6 104345493 104345848 -78069394 + THE1B LTR MaLR 3 364 0 5991 233 91 66 chr6 104345848 104346672 -78068570 - L1MD3 LINE L1 -2630 6160 5070 1481 254 30 21 chr6 104346663 104347227 -78068015 - L1MD3 LINE L1 -3421 3520 2952 * 674 221 9 122 chr6 104347249 104347331 -78067911 + MER58B DNA MER1_type 26 116 -2304 1651 166 39 21 chr6 104347331 104347614 -78067628 + AluSx SINE Alu 6 293 -19 674 221 9 122 chr6 104347614 104347884 -78067358 + MER58B DNA MER1_type 116 341 0 876 273 88 12 chr6 104347934 104348345 -78066897 - L1MD3 LINE L1 -4202 2920 2479 * 1275 262 109 34 chr6 104348340 104348880 -78066362 - L1MD3 LINE L1 -4872 2069 1571 676 274 78 5 chr6 104348880 104349084 -78066158 - MER20 DNA MER1_type 0 219 1 1275 262 109 34 chr6 104349084 104349693 -78065549 - L1MD3 LINE L1 -5370 1571 816 295 292 130 47 chr6 104349857 104350029 -78065213 - L1MD3 LINE L1 -5623 799 643 2198 138 11 8 chr6 104350029 104350383 -78064859 - THE1A LTR MaLR 0 355 1 11582 93 6 1 chr6 104350383 104351954 -78063288 - THE1A-int LTR MaLR 0 1580 1 2285 121 11 11 chr6 104351954 104352309 -78062933 - THE1A LTR MaLR 0 355 1 295 292 130 47 chr6 104352309 104352555 -78062687 - L1MD3 LINE L1 -5778 644 33 5648 152 37 9 chr6 104353864 104355056 -78060186 - L1MA6 LINE L1 0 6300 5077 23 33 0 0 chr6 104355694 104355724 -78059518 + AT_rich Low_complexity Low_complexity 1 30 0 185 370 12 0 chr6 104356197 104356278 -78058964 - MIR3 SINE MIR -53 155 74 1217 268 66 55 chr6 104356760 104357490 -78057752 - MER49 LTR ERV1 0 923 4 21 0 0 0 chr6 104358386 104358407 -78056835 + AT_rich Low_complexity Low_complexity 1 21 0 1409 93 10 10 chr6 104358408 104358601 -78056641 + AluY SINE Alu 108 300 -11 23 0 0 0 chr6 104359030 104359053 -78056189 + AT_rich Low_complexity Low_complexity 1 23 0 2170 107 3 0 chr6 104359398 104359689 -78055553 - AluSq SINE Alu -21 292 1 275 273 10 30 chr6 104360022 104360121 -78055121 - L1MC/D LINE L1 -2515 5527 5431 318 177 48 0 chr6 104360122 104360184 -78055058 - MIR SINE MIR -36 226 162 267 300 0 12 chr6 104363087 104363167 -78052075 - L2 LINE L2 -200 3072 2994 1903 278 131 24 chr6 104363618 104364740 -78050502 + L2 LINE L2 2051 3273 -40 598 241 65 30 chr6 104365190 104365389 -78049853 + MIR SINE MIR 3 208 -54 459 276 0 32 chr6 104365976 104366099 -78049143 + L2 LINE L2 3195 3313 0 380 335 63 31 chr6 104366129 104366383 -78048859 + MIR SINE MIR 1 262 0 21 36 0 0 chr6 104367064 104367092 -78048150 + AT_rich Low_complexity Low_complexity 1 28 0 1508 197 31 0 chr6 104367199 104367493 -78047749 + AluJb SINE Alu 1 303 -9 726 256 12 0 chr6 104367662 104367834 -78047408 + MIR SINE MIR 81 254 -8 220 224 20 0 chr6 104367840 104367889 -78047353 + (CTA)n Simple_repeat Simple_repeat 2 51 0 541 241 167 12 chr6 104368410 104368572 -78046670 + Charlie8 DNA MER1_type 87 273 -2144 2411 318 82 36 chr6 104368663 104369663 -78045579 + L2 LINE L2 1457 2409 -905 456 155 29 39 chr6 104369663 104369790 -78045452 + L1PA8 LINE L1 6071 6172 0 2411 318 82 36 chr6 104369790 104370016 -78045226 + L2 LINE L2 2409 2623 -691 339 360 0 0 chr6 104370016 104370127 -78045115 - MER81 DNA DNA 0 114 4 2411 318 82 36 chr6 104370127 104370309 -78044933 + L2 LINE L2 2623 2931 -383 1862 143 59 0 chr6 104370368 104370654 -78044588 + AluSx SINE Alu 1 303 -9 12280 185 42 58 chr6 104370689 104371004 -78044238 + L1MA9 LINE L1 3407 3726 -4005 2160 243 34 31 chr6 104371004 104371519 -78043723 + MLT2B3 LTR ERVL 1 520 -34 518 62 0 12 chr6 104371519 104371599 -78043643 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 2160 243 34 31 chr6 104371599 104371635 -78043607 + MLT2B3 LTR ERVL 520 554 0 12280 185 42 58 chr6 104371635 104372346 -78042896 + L1MA9 LINE L1 3726 4447 -3284 1969 140 0 3 chr6 104372346 104372653 -78042589 + AluSx SINE Alu 1 306 -6 12280 185 42 58 chr6 104372653 104374635 -78040607 + L1MA9 LINE L1 4447 6430 -1301 533 184 0 0 chr6 104374635 104374722 -78040520 + Tigger5 DNA MER2_type 2237 2323 0 12280 185 42 58 chr6 104374722 104375979 -78039263 + L1MA9 LINE L1 6430 7706 -25 255 333 35 11 chr6 104376285 104376372 -78038870 + MIR SINE MIR 39 127 -81 2191 82 26 13 chr6 104376491 104376796 -78038446 - AluSc SINE Alu 0 309 1 2093 130 0 0 chr6 104377029 104377322 -78037920 + AluSx SINE Alu 1 293 -19 1296 219 109 13 chr6 104379446 104379764 -78035478 - MLT1G3 LTR MaLR 0 530 194 26 0 0 0 chr6 104379768 104379794 -78035448 + AT_rich Low_complexity Low_complexity 1 26 0 561 280 34 58 chr6 104379941 104380320 -78034922 + L1ME4a LINE L1 5360 5729 -2079 303 230 121 75 chr6 104380365 104380539 -78034703 + L1ME4a LINE L1 5717 5898 -223 1488 192 33 7 chr6 104380562 104380864 -78034378 - AluJo SINE Alu 0 313 5 190 351 26 13 chr6 104381020 104381097 -78034145 - L2 LINE L2 -18 3254 3177 196 358 148 12 chr6 104381532 104381694 -78033548 - L2 LINE L2 -172 3100 2917 2381 240 25 6 chr6 104381924 104382574 -78032668 + L1MC/D LINE L1 4501 5162 -984 1720 206 14 30 chr6 104382614 104382978 -78032264 - MLT1A1 LTR MaLR 0 365 8 1724 191 116 71 chr6 104382984 104383376 -78031866 + L1M2 LINE L1 5197 5622 -557 1804 131 26 26 chr6 104383376 104383715 -78031527 + AluSg SINE Alu 2 310 0 1724 191 116 71 chr6 104383715 104383878 -78031364 + L1M2 LINE L1 5622 5776 -403 394 202 32 11 chr6 104383894 104383988 -78031254 + L1MC/D LINE L1 5589 5684 -2101 380 236 74 128 chr6 104384248 104384545 -78030697 + L1MEd LINE L1 717 997 -5122 282 319 71 0 chr6 104384561 104384674 -78030568 - L2 LINE L2 -695 2619 2499 198 103 0 0 chr6 104385117 104385146 -78030096 + (CAG)n Simple_repeat Simple_repeat 1 29 0 425 272 126 29 chr6 104385300 104385609 -78029633 + L1ME LINE L1 5482 5820 -301 657 286 73 60 chr6 104385652 104385907 -78029335 + LTR33 LTR ERVL 13 278 -243 2173 69 41 3 chr6 104385907 104386198 -78029044 + AluY SINE Alu 1 302 -9 657 286 73 60 chr6 104386198 104386396 -78028846 + LTR33 LTR ERVL 278 472 -49 1903 107 181 0 chr6 104386911 104387249 -78027993 - L1PA16 LINE L1 -9 6157 5759 25 99 0 0 chr6 104388344 104388425 -78026817 + AT_rich Low_complexity Low_complexity 1 81 0 316 343 30 18 chr6 104388979 104389145 -78026097 + MIR3 SINE MIR 38 205 -3 248 304 73 59 chr6 104389763 104389983 -78025259 - MLT1I LTR MaLR -127 282 60 305 313 12 0 chr6 104390246 104390326 -78024916 + L2 LINE L2 3192 3272 0 193 29 29 29 chr6 104390731 104390766 -78024476 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 239 374 103 15 chr6 104390874 104391069 -78024173 - L2 LINE L2 -182 3090 2879 1975 220 62 24 chr6 104391092 104391748 -78023494 - Tigger7 DNA MER2_type -27 2560 1 1165 82 154 67 chr6 104392764 104392972 -78022270 - AluY SINE Alu -2 309 84 306 0 0 0 chr6 104393116 104393150 -78022092 + (TG)n Simple_repeat Simple_repeat 1 34 0 533 242 46 33 chr6 104394168 104394321 -78020921 - MER5A DNA MER1_type -21 168 14 714 186 0 0 chr6 104394532 104394656 -78020586 + FLAM_C SINE Alu 3 126 -7 1819 134 72 28 chr6 104395216 104395575 -78019667 + THE1C LTR MaLR 1 375 0 449 263 6 44 chr6 104396149 104396309 -78018933 + MIR SINE MIR 108 261 -1 364 344 23 0 chr6 104396410 104396538 -78018704 + MER5A DNA MER1_type 56 186 -3 182 380 70 32 chr6 104396605 104396630 -78018612 + MIR SINE MIR 89 112 -150 341 155 24 71 chr6 104396630 104396714 -78018528 + MADE1 DNA Mariner 1 80 0 182 380 70 32 chr6 104396714 104396846 -78018396 + MIR SINE MIR 112 252 -10 197 350 33 58 chr6 104397878 104397998 -78017244 - L2 LINE L2 -328 2985 2869 186 330 48 19 chr6 104398163 104398266 -78016976 - L2 LINE L2 0 3313 3208 224 245 157 49 chr6 104398487 104398589 -78016653 - L2 LINE L2 -5 3267 3155 493 275 63 21 chr6 104399007 104399196 -78016046 - MIR SINE MIR -65 197 1 384 304 68 19 chr6 104399367 104399528 -78015714 - MIR3 SINE MIR -9 199 31 304 241 0 74 chr6 104402403 104402511 -78012731 - MER5B DNA MER1_type -4 174 75 2463 66 0 3 chr6 104403009 104403310 -78011932 - AluSx SINE Alu -12 300 1 335 301 52 7 chr6 104403705 104403841 -78011401 - LTR67 LTR ERVL -6 551 410 363 307 77 20 chr6 104404596 104404896 -78010346 + L1 LINE L1 2915 3231 -2915 249 179 112 73 chr6 104404881 104404976 -78010266 + L1 LINE L1 3847 3938 -2208 * 1228 210 40 40 chr6 104404976 104405276 -78009966 - AluJo SINE Alu -2 300 1 249 179 112 73 chr6 104405276 104405324 -78009918 + L1 LINE L1 3938 3983 -2163 * 3234 216 40 15 chr6 104405322 104405865 -78009377 + L1ME2 LINE L1 5339 5910 -254 216 0 0 0 chr6 104405865 104405889 -78009353 + (TG)n Simple_repeat Simple_repeat 2 25 0 3234 216 40 15 chr6 104405889 104406141 -78009101 + L1ME2 LINE L1 5910 6154 -10 1422 222 95 16 chr6 104406138 104406625 -78008617 + L1MC4 LINE L1 6343 7030 -1012 * 1165 220 14 0 chr6 104406655 104406941 -78008301 + L1PA16 LINE L1 5056 5345 -801 1433 69 0 30 chr6 104406941 104407143 -78008099 + AluY SINE Alu 114 309 -2 4182 169 16 8 chr6 104407155 104407916 -78007326 + L1PA16 LINE L1 5376 6142 -24 21 0 0 0 chr6 104407916 104407937 -78007305 + AT_rich Low_complexity Low_complexity 1 21 0 1645 223 118 34 chr6 104408184 104408776 -78006466 + L1MC4 LINE L1 7033 7674 -368 887 225 41 26 chr6 104408792 104409059 -78006183 + L1MC4 LINE L1 7768 8038 -4 2179 90 0 42 chr6 104409059 104409369 -78005873 + AluSg SINE Alu 1 297 -13 402 204 301 0 chr6 104410394 104410507 -78004735 + MIR SINE MIR 104 250 -12 22 35 0 0 chr6 104410513 104410542 -78004700 + AT_rich Low_complexity Low_complexity 1 29 0 1890 152 149 11 chr6 104410876 104411252 -78003990 + MSTA LTR MaLR 1 428 0 588 311 57 22 chr6 104411771 104412141 -78003101 + HAL1 LINE L1 1141 1523 -984 1032 131 0 0 chr6 104412349 104412494 -78002748 + LTR8 LTR ERV1 547 691 0 9446 111 62 15 chr6 104412495 104413646 -78001596 + HUERS-P1 LTR ERV1 2 1097 -5166 477 34 0 0 chr6 104413646 104413705 -78001537 + (TC)n Simple_repeat Simple_repeat 2 60 0 312 27 0 0 chr6 104413704 104413741 -78001501 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 9446 111 62 15 chr6 104413705 104414290 -78000952 + HUERS-P1 LTR ERV1 1097 1811 -4452 * 18171 117 33 44 chr6 104414278 104414888 -78000354 + HUERS-P1 LTR ERV1 1456 2071 -3875 2579 99 11 11 chr6 104414888 104415252 -77999990 - THE1B LTR MaLR 0 364 1 18171 117 33 44 chr6 104415252 104418241 -77997001 + HUERS-P1 LTR ERV1 2071 4771 -1175 1471 154 0 24 chr6 104418241 104418487 -77996755 + LTR8 LTR ERV1 340 579 -112 213 39 0 0 chr6 104418487 104418513 -77996729 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr6 104418512 104418546 -77996696 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1913 148 123 50 chr6 104419965 104420364 -77994878 - MSTA LTR MaLR 0 428 1 240 220 40 0 chr6 104420704 104420754 -77994488 + polypyrimidine Low_complexity Low_complexity 4 55 0 1234 259 163 53 chr6 104420875 104421403 -77993839 - MLT1E LTR MaLR 0 593 8 246 208 21 0 chr6 104423429 104423477 -77991765 + GA-rich Low_complexity Low_complexity 3 51 0 737 288 126 33 chr6 104423567 104423932 -77991310 + MLT1J LTR MaLR 36 434 -77 5459 174 47 35 chr6 104423935 104425227 -77990015 + L1PA16 LINE L1 4125 5419 -747 1672 117 3 91 chr6 104425227 104425536 -77989706 + AluSq SINE Alu 22 303 -10 5459 174 47 35 chr6 104425536 104426285 -77988957 + L1PA16 LINE L1 5419 6157 -9 232 230 23 46 chr6 104426294 104426381 -77988861 + MLT1J LTR MaLR 427 511 0 789 173 29 0 chr6 104426508 104426647 -77988595 - MER5A DNA MER1_type -13 176 34 528 278 13 7 chr6 104426975 104427126 -77988116 + MER5A DNA MER1_type 38 189 0 26 0 0 0 chr6 104427261 104427287 -77987955 + AT_rich Low_complexity Low_complexity 1 26 0 344 328 120 59 chr6 104427601 104428323 -77986919 + L2 LINE L2 2515 3271 -1 519 277 121 0 chr6 104428514 104428655 -77986587 - MIR SINE MIR -92 170 13 4166 145 48 14 chr6 104430834 104431627 -77983615 - L1MA4 LINE L1 -5 6295 5476 6470 148 13 22 chr6 104431632 104432170 -77983072 - L1MA3 LINE L1 -2 6303 5761 2368 148 3 3 chr6 104432170 104432534 -77982708 - THE1B LTR MaLR 0 364 1 10583 111 40 0 chr6 104432534 104434054 -77981188 - THE1B-int LTR MaLR 0 1580 1 2271 132 25 3 chr6 104434054 104434410 -77980832 - THE1B LTR MaLR 0 364 1 6470 148 13 22 chr6 104434410 104435813 -77979429 - L1MA3 LINE L1 -542 5763 4381 2151 118 6 13 chr6 104435813 104436128 -77979114 - AluSq SINE Alu 0 313 1 6470 148 13 22 chr6 104436128 104436196 -77979046 - L1MA3 LINE L1 -1924 4381 4314 6191 176 35 12 chr6 104436195 104436548 -77978694 - L1PB2 LINE L1 -1 6150 5807 * 306 0 0 0 chr6 104436548 104436582 -77978660 + (TG)n Simple_repeat Simple_repeat 2 35 0 6191 176 35 12 chr6 104436582 104437968 -77977274 - L1PB2 LINE L1 -344 5807 4359 6227 93 8 0 chr6 104437968 104439109 -77976133 - L1PA10 LINE L1 -1 6167 5021 6191 176 35 12 chr6 104439109 104439689 -77975553 - L1PB2 LINE L1 -1792 4359 3794 259 299 161 46 chr6 104490320 104490494 -77924748 - L2 LINE L2 -1 3312 3119 533 301 68 0 chr6 104490584 104490760 -77924482 - L2 LINE L2 -961 2353 2166 255 224 233 43 chr6 104491795 104491911 -77923331 + MIR SINE MIR 75 212 -50 517 282 110 49 chr6 104493087 104493140 -77922102 + L2 LINE L2 2837 2885 -428 225 0 0 0 chr6 104493140 104493165 -77922077 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 517 282 110 49 chr6 104493165 104493437 -77921805 + L2 LINE L2 2885 3182 -131 22 56 0 0 chr6 104494100 104494136 -77921106 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr6 104494895 104494918 -77920324 + AT_rich Low_complexity Low_complexity 1 23 0 2726 168 42 18 chr6 104495309 104496308 -77918934 + Tigger6a DNA MER2_type 1 1074 -9 22 35 0 0 chr6 104496505 104496534 -77918708 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr6 104497779 104497815 -77917427 + AT_rich Low_complexity Low_complexity 1 36 0 6324 184 44 8 chr6 104498024 104500171 -77915071 + L1PB4 LINE L1 3942 6153 -3 22 0 0 0 chr6 104500319 104500341 -77914901 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 104501112 104501139 -77914103 + AT_rich Low_complexity Low_complexity 1 27 0 255 195 0 35 chr6 104502498 104502585 -77912657 + CT-rich Low_complexity Low_complexity 3 86 0 48 77 0 0 chr6 104506770 104506874 -77908368 + AT_rich Low_complexity Low_complexity 1 104 0 2171 142 28 17 chr6 104508096 104508455 -77906787 - THE1B LTR MaLR 0 364 2 10912 79 48 4 chr6 104508456 104509970 -77905272 - THE1B-int LTR MaLR 0 1580 1 2304 137 29 0 chr6 104509972 104510314 -77904928 - THE1B LTR MaLR -12 352 1 266 143 41 0 chr6 104511430 104511479 -77903763 + L1ME LINE L1 5563 5613 -508 3054 83 0 0 chr6 104512092 104512501 -77902741 + L1PA7 LINE L1 5746 6154 0 1469 210 74 25 chr6 104512562 104513013 -77902229 + MER39 LTR ERV1 4 700 -7 27 49 0 0 chr6 104513249 104513290 -77901952 + AT_rich Low_complexity Low_complexity 1 41 0 180 338 0 44 chr6 104514154 104514222 -77901020 + MIR SINE MIR 124 188 -74 216 182 0 0 chr6 104517082 104517126 -77898116 + GA-rich Low_complexity Low_complexity 2 45 0 673 150 39 8 chr6 104517175 104517302 -77897940 + FLAM_C SINE Alu 1 131 -2 14248 198 39 16 chr6 104518089 104525210 -77890032 - L1MA5 LINE L1 -23 7298 2 219 163 0 20 chr6 104525295 104525344 -77889898 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 2312 68 41 0 chr6 104525728 104526021 -77889221 - AluY SINE Alu -6 305 1 282 230 184 17 chr6 104526195 104526369 -77888873 - L1ME4a LINE L1 -121 6000 5798 1142 196 171 4 chr6 104526515 104526790 -77888452 - MER58B DNA MER1_type -1 340 20 267 333 12 0 chr6 104528913 104528997 -77886245 - L2 LINE L2 -19 3294 3210 207 0 0 0 chr6 104529309 104529332 -77885910 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 293 180 18 18 chr6 104529576 104529687 -77885555 + (CA)n Simple_repeat Simple_repeat 2 112 0 360 283 9 53 chr6 104530157 104530270 -77884972 + MIR3 SINE MIR 98 205 -3 2045 143 0 0 chr6 104530762 104531070 -77884172 + AluSx SINE Alu 3 310 -2 255 269 128 0 chr6 104531193 104531271 -77883971 + MIR3 SINE MIR 111 198 -10 23 68 0 0 chr6 104531541 104531585 -77883657 + AT_rich Low_complexity Low_complexity 1 44 0 192 356 38 68 chr6 104535204 104535336 -77879906 - MIR SINE MIR -63 145 18 259 341 79 81 chr6 104536221 104536628 -77878614 - L2 LINE L2 -1 3271 2866 444 19 0 0 chr6 104536636 104536689 -77878553 + (TG)n Simple_repeat Simple_repeat 2 54 0 8453 112 20 2 chr6 104538493 104539768 -77875474 + HSMAR2 DNA Mariner 2 1300 -2 733 294 86 56 chr6 104539994 104540408 -77874834 - L1ME3 LINE L1 -216 6015 5582 2099 106 34 0 chr6 104540408 104540701 -77874541 - AluSx SINE Alu -9 303 1 733 294 86 56 chr6 104540701 104540789 -77874453 - L1ME3 LINE L1 -649 5582 5498 343 307 57 33 chr6 104540946 104541190 -77874052 - L1ME3 LINE L1 -852 5363 5114 427 276 81 9 chr6 104541223 104541433 -77873809 - L1ME3 LINE L1 -1163 5052 4828 245 253 38 0 chr6 104541547 104541626 -77873616 - L1ME3 LINE L1 -1785 4430 4349 3574 286 83 15 chr6 104541629 104543561 -77871681 - L1M LINE L1 -743 5403 3356 357 274 99 69 chr6 104543653 104543923 -77871319 - L1ME3 LINE L1 -862 1714 1409 7615 92 5 14 chr6 104543923 104545004 -77870238 - MER11C LTR ERVK 0 1071 1 357 274 99 69 chr6 104545004 104545204 -77870038 - L1ME3 LINE L1 -1167 1409 1216 370 290 129 48 chr6 104545217 104545575 -77869667 - L1ME3 LINE L1 -5065 1174 791 468 51 0 0 chr6 104546428 104546487 -77868755 + (TA)n Simple_repeat Simple_repeat 1 59 0 571 298 81 40 chr6 104547316 104548277 -77866965 - L1MEd LINE L1 -4657 1653 603 303 272 0 0 chr6 104548421 104548502 -77866740 - L1MEd LINE L1 -5937 182 102 22 56 0 0 chr6 104549386 104549422 -77865820 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr6 104549477 104549514 -77865728 + AT_rich Low_complexity Low_complexity 1 37 0 279 348 37 22 chr6 104550088 104550223 -77865019 + MIR SINE MIR 96 232 -30 403 253 152 38 chr6 104550751 104550909 -77864333 - MER5B DNA MER1_type -2 176 1 196 356 130 26 chr6 104550988 104551103 -77864139 + L2 LINE L2 3146 3272 0 2133 118 3 0 chr6 104551392 104551689 -77863553 - AluSp SINE Alu -9 304 7 303 181 0 0 chr6 104552645 104552717 -77862525 + CT-rich Low_complexity Low_complexity 4 75 0 2127 116 0 3 chr6 104553254 104553557 -77861685 + AluSc SINE Alu 1 302 -7 1366 25 0 0 chr6 104554635 104554792 -77860450 - AluY SINE Alu 0 311 155 246 293 0 0 chr6 104556185 104556243 -77858999 - MIR SINE MIR -128 134 77 377 231 8 0 chr6 104556443 104556564 -77858678 + CT-rich Low_complexity Low_complexity 2 123 0 2220 128 0 0 chr6 104558540 104558852 -77856390 - AluSx SINE Alu 0 312 1 249 108 0 0 chr6 104559593 104559630 -77855612 + (CA)n Simple_repeat Simple_repeat 2 38 0 1860 149 7 30 chr6 104559901 104560197 -77855045 + AluJo SINE Alu 1 289 -23 180 234 43 0 chr6 104561899 104561946 -77853296 - L2 LINE L2 0 3313 3265 453 305 109 17 chr6 104561955 104562194 -77853048 + MIR SINE MIR 2 262 0 22 0 0 0 chr6 104564881 104564903 -77850339 + AT_rich Low_complexity Low_complexity 1 22 0 1458 98 49 26 chr6 104565176 104565441 -77849801 + L1MA8 LINE L1 6013 6283 -8 227 259 147 49 chr6 104565644 104565787 -77849455 + MIR3 SINE MIR 30 186 -22 878 274 12 32 chr6 104565895 104566147 -77849095 + MIR SINE MIR 16 262 0 201 333 54 32 chr6 104567404 104567497 -77847745 - MIR SINE MIR -167 95 1 194 329 101 0 chr6 104567703 104567782 -77847460 + L2 LINE L2 3227 3313 0 258 326 47 12 chr6 104570396 104570482 -77844760 + L3 LINE CR1 1365 1453 -124 2538 49 0 0 chr6 104571352 104571658 -77843584 + AluY SINE Alu 1 306 -5 29 0 0 0 chr6 104573618 104573647 -77841595 + AT_rich Low_complexity Low_complexity 1 29 0 476 358 118 19 chr6 104573756 104574279 -77840963 + L2 LINE L2 1841 2415 -899 3438 185 43 17 chr6 104574328 104575086 -77840156 + L1MB7 LINE L1 5405 6182 -2 367 354 32 0 chr6 104575180 104575338 -77839904 + L2 LINE L2 2897 3059 -213 473 297 118 14 chr6 104575436 104575648 -77839594 + MIR SINE MIR 15 248 -14 265 313 0 12 chr6 104575710 104575790 -77839452 + L2 LINE L2 3230 3308 -5 265 283 20 30 chr6 104577128 104577227 -77838015 - MIR SINE MIR -75 187 90 420 290 23 23 chr6 104577664 104577795 -77837447 + L2 LINE L2 3182 3312 -1 455 289 113 25 chr6 104578305 104578464 -77836778 - MIR SINE MIR -74 188 16 1818 153 7 0 chr6 104578618 104578905 -77836337 - AluJb SINE Alu -19 293 5 211 230 350 20 chr6 104579501 104579601 -77835641 + MER5B DNA MER1_type 4 136 -42 * 219 342 13 13 chr6 104579594 104579673 -77835569 + MIR3 SINE MIR 121 199 -9 257 209 70 58 chr6 104579796 104579882 -77835360 - MIR SINE MIR -136 126 40 609 198 61 42 chr6 104580628 104580840 -77834402 - L1MC5 LINE L1 -36 7925 7710 2184 105 10 7 chr6 104582258 104582564 -77832678 - AluSg SINE Alu -3 307 1 1432 134 63 0 chr6 104582805 104583089 -77832153 - L1MA8 LINE L1 -2 6289 5988 811 263 64 17 chr6 104583291 104583527 -77831715 + MIR SINE MIR 8 254 -8 655 135 0 0 chr6 104583906 104584017 -77831225 - L1MA2 LINE L1 0 6304 6194 4317 188 45 27 chr6 104584455 104585533 -77829709 - L1MD1 LINE L1 -5 6631 5528 2043 189 47 95 chr6 104585528 104586085 -77829157 - L1MD1 LINE L1 -5986 554 25 * 1401 228 103 16 chr6 104586084 104586522 -77828720 - L1MC4a LINE L1 -1915 5893 5418 * 201 175 0 0 chr6 104586541 104586581 -77828661 + (TA)n Simple_repeat Simple_repeat 2 41 0 231 214 0 0 chr6 104586585 104586641 -77828601 - L1MC4 LINE L1 -1339 6703 6648 520 210 31 37 chr6 104586769 104586931 -77828311 - L1ME1 LINE L1 -14 6152 5992 27 0 0 0 chr6 104588636 104588663 -77826579 + AT_rich Low_complexity Low_complexity 1 27 0 263 256 33 11 chr6 104588980 104589070 -77826172 - MARNA DNA Mariner -241 345 254 1823 274 80 23 chr6 104589089 104589938 -77825304 + L1MC4 LINE L1 6897 7713 -95 33797 75 32 1 chr6 104589967 104594432 -77820810 + L1PA4 LINE L1 3 4605 -1541 7394 31 3 12 chr6 104594432 104595680 -77819562 + L1PA4 LINE L1 4962 6183 0 258 222 49 49 chr6 104595693 104595837 -77819405 + L1MC4 LINE L1 7896 8039 -3 231 114 0 0 chr6 104596366 104596401 -77818841 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 2332 146 35 11 chr6 104596667 104597118 -77818124 - L1MA4 LINE L1 -4 6296 5835 523 335 11 150 chr6 104598713 104598973 -77816269 - L1PA16 LINE L1 -2 6164 5941 453 239 18 0 chr6 104598971 104599080 -77816162 + L1P LINE L1 3999 4109 -2037 * 450 280 132 6 chr6 104599088 104599270 -77815972 - MIR SINE MIR -56 206 2 258 239 15 0 chr6 104599633 104599700 -77815542 + MER116 DNA Mariner 1 68 -12 259 285 46 54 chr6 104599717 104599847 -77815395 - HAL1 LINE L1 -57 2450 2322 269 288 12 0 chr6 104601343 104601423 -77813819 - HAL1 LINE L1 -612 1895 1815 947 126 0 0 chr6 104601503 104601638 -77813604 - U4 snRNA snRNA -10 135 1 356 247 0 12 chr6 104601639 104601724 -77813518 - HAL1 LINE L1 -757 1750 1667 231 203 36 7 chr6 104601766 104601795 -77813447 + (TAGA)n Simple_repeat Simple_repeat 1 28 -77 210 118 0 0 chr6 104601795 104601829 -77813413 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 231 203 36 7 chr6 104601829 104601838 -77813404 + (TAGA)n Simple_repeat Simple_repeat 28 105 0 218 32 32 0 chr6 104601838 104601869 -77813373 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 1628 146 16 0 chr6 104602036 104602290 -77812952 - AluSx SINE Alu -54 258 1 619 320 106 53 chr6 104602290 104602799 -77812443 - HAL1 LINE L1 -1337 1170 635 941 281 115 16 chr6 104603368 104603734 -77811508 - LTR33 LTR ERVL -20 501 100 23 0 0 0 chr6 104603889 104603912 -77811330 + AT_rich Low_complexity Low_complexity 1 23 0 233 284 15 0 chr6 104604047 104604114 -77811128 - HAL1 LINE L1 -2427 80 13 296 362 100 14 chr6 104604132 104604342 -77810900 + L2 LINE L2 2860 3087 -185 441 185 65 0 chr6 104604450 104604558 -77810684 - MER20B DNA MER1_type 0 783 669 22 35 0 0 chr6 104605873 104605902 -77809340 + AT_rich Low_complexity Low_complexity 1 29 0 304 212 230 24 chr6 104605917 104606082 -77809160 - MER20B DNA MER1_type -125 658 460 1119 243 114 9 chr6 104606252 104606593 -77808649 + HsTC2 DNA Tc2 35 411 -1487 1584 285 11 13 chr6 104606959 104607485 -77807757 + L1PA16 LINE L1 2182 2706 -4875 768 183 233 11 chr6 104607489 104607669 -77807573 - AluJb SINE Alu -6 306 87 4757 229 16 5 chr6 104607672 104609279 -77805963 + L1PA16 LINE L1 2702 4325 -3259 7772 214 14 16 chr6 104609409 104610426 -77804816 + L1PA16 LINE L1 4798 5814 -1770 2390 55 0 7 chr6 104610426 104610719 -77804523 - AluY SINE Alu -20 291 1 7772 214 14 16 chr6 104610719 104611508 -77803734 + L1PA16 LINE L1 5814 6602 -982 4276 142 71 10 chr6 104611691 104612611 -77802631 + L1PA16 LINE L1 6580 7595 -9 2572 124 39 5 chr6 104612626 104613061 -77802181 - L1MB3 LINE L1 -33 6150 5701 981 171 89 162 chr6 104613061 104613511 -77801731 - LOR1a LTR ERV1 0 497 81 470 291 60 0 chr6 104615641 104615775 -77799467 + LTR50 LTR ERVL 18 159 -636 2692 302 31 10 chr6 104616297 104617128 -77798114 + HERVL LTR ERVL 3764 4612 -1042 631 282 6 0 chr6 104617287 104617450 -77797792 + HERVL LTR ERVL 4910 5073 -691 736 261 0 0 chr6 104617451 104617616 -77797626 + MER77 LTR ERV1 441 605 0 243 169 91 0 chr6 104617783 104617860 -77797382 - L1M4 LINE L1 -2157 3989 3906 476 314 65 46 chr6 104618072 104618333 -77796909 - MLT1H LTR MaLR -247 302 37 1838 202 138 15 chr6 104618592 104619910 -77795332 + L1MCa LINE L1 1314 2885 -3541 32 26 0 0 chr6 104621202 104621241 -77794001 + AT_rich Low_complexity Low_complexity 1 39 0 2546 116 6 0 chr6 104621660 104622022 -77793220 + THE1B LTR MaLR 1 364 0 1509 195 99 9 chr6 104622302 104622636 -77792606 - MLT1A1 LTR MaLR 0 365 2 327 364 0 0 chr6 104622942 104623052 -77792190 - L2 LINE L2 -6 3307 3198 183 253 127 76 chr6 104623071 104623150 -77792092 - L2 LINE L2 -221 3051 2969 396 205 36 12 chr6 104623233 104623316 -77791926 - L2 LINE L2 0 3313 3229 461 270 119 13 chr6 104624494 104624653 -77790589 - MIR SINE MIR -3 259 84 1991 111 51 87 chr6 104626328 104626717 -77788525 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr6 104626761 104626784 -77788458 + AT_rich Low_complexity Low_complexity 1 23 0 661 216 10 108 chr6 104626810 104627014 -77788228 - MIR SINE MIR -71 191 8 355 341 119 0 chr6 104627017 104627153 -77788089 - MIR SINE MIR -55 153 1 1867 153 0 3 chr6 104627369 104627651 -77787591 - AluSx SINE Alu -2 310 30 925 289 162 18 chr6 104627767 104628328 -77786914 - HAL1 LINE L1 -1783 724 83 182 80 0 0 chr6 104628664 104628689 -77786553 + L2 LINE L2 2715 2739 -575 334 368 67 40 chr6 104628876 104629205 -77786037 + L2 LINE L2 2857 3194 -78 21 0 0 0 chr6 104629319 104629340 -77785902 + AT_rich Low_complexity Low_complexity 1 21 0 324 257 160 28 chr6 104629909 104630053 -77785189 - MIR SINE MIR -13 249 87 655 138 19 4 chr6 104631491 104631610 -77783632 + MLT2D LTR ERVL 84 191 -223 285 300 72 61 chr6 104631781 104631961 -77783281 - MER5A DNA MER1_type -1 188 7 2035 131 79 18 chr6 104633169 104633512 -77781730 + THE1B LTR MaLR 1 364 0 9145 100 4 28 chr6 104633512 104633900 -77781342 + MSTA-int LTR MaLR 1 397 -1183 2237 97 3 3 chr6 104633900 104634198 -77781044 - AluSx SINE Alu -14 298 1 9145 100 4 28 chr6 104634198 104635187 -77780055 + MSTA-int LTR MaLR 397 1345 -235 18973 177 24 27 chr6 104635288 104637941 -77777301 + L1M1 LINE L1 24 2683 -4882 2515 123 54 5 chr6 104637941 104638349 -77776893 + MSTA LTR MaLR 1 428 0 18973 177 24 27 chr6 104638349 104641085 -77774157 + L1M1 LINE L1 2683 5407 -2158 9068 167 143 8 chr6 104641108 104643242 -77772000 + L1MA3 LINE L1 709 3131 -4435 3650 112 14 2 chr6 104643243 104643797 -77771445 + L1PB1 LINE L1 5590 6150 -1 6756 138 32 9 chr6 104643808 104646097 -77769145 + L1MA3 LINE L1 5395 7724 0 1617 186 29 23 chr6 104646888 104647194 -77768048 - AluJo SINE Alu -4 308 1 1266 244 26 51 chr6 104647898 104648328 -77766914 - MLT1D LTR MaLR -86 419 1 275 282 68 29 chr6 104648368 104648471 -77766771 - MIR SINE MIR 0 262 156 2244 181 58 36 chr6 104648660 104649128 -77766114 + MLT2B1 LTR ERVL 1 482 -38 186 71 0 0 chr6 104649128 104649156 -77766086 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 2244 181 58 36 chr6 104649156 104649191 -77766051 + MLT2B1 LTR ERVL 482 515 -5 14667 179 42 16 chr6 104649191 104652616 -77762626 + ERVL LTR ERVL 1 3575 -2118 1885 155 43 43 chr6 104652871 104653204 -77762038 + THE1C LTR MaLR 1 336 -39 2039 88 92 3 chr6 104653204 104653487 -77761755 - AluSc SINE Alu -1 308 1 1885 155 43 43 chr6 104653487 104653528 -77761714 + THE1C LTR MaLR 335 375 0 360 229 64 18 chr6 104654495 104654604 -77760638 - L1ME4a LINE L1 -49 6072 5959 314 257 29 0 chr6 104654894 104654964 -77760278 + L2 LINE L2 3201 3272 0 981 164 0 61 chr6 104654972 104655186 -77760056 + MLT1B LTR MaLR 2 202 -188 709 193 28 7 chr6 104655180 104655325 -77759917 + MLT2D LTR ERVL 219 366 -48 * 288 53 0 0 chr6 104655328 104655366 -77759876 + (TC)n Simple_repeat Simple_repeat 1 38 0 201 74 0 0 chr6 104655366 104655393 -77759849 + (TG)n Simple_repeat Simple_repeat 2 28 0 432 0 0 0 chr6 104655574 104655622 -77759620 + (TA)n Simple_repeat Simple_repeat 1 48 0 * 495 33 0 0 chr6 104655621 104655682 -77759560 + (GA)n Simple_repeat Simple_repeat 2 62 0 2021 104 0 4 chr6 104655699 104655968 -77759274 - AluSx SINE Alu -44 268 1 765 216 193 19 chr6 104656795 104657054 -77758188 - MER2 DNA MER2_type 0 345 42 252 269 0 0 chr6 104657099 104657151 -77758091 + MIR SINE MIR 93 144 -64 25 0 0 0 chr6 104657762 104657787 -77757455 + AT_rich Low_complexity Low_complexity 1 25 0 267 359 117 10 chr6 104658049 104658092 -77757150 + L2 LINE L2 2841 2878 -435 192 40 0 0 chr6 104658092 104658117 -77757125 + (CA)n Simple_repeat Simple_repeat 2 26 0 267 359 117 10 chr6 104658117 104658223 -77757019 + L2 LINE L2 2878 2971 -342 1924 154 8 50 chr6 104658223 104658586 -77756656 + MER7A DNA MER2_type 1 346 0 267 359 117 10 chr6 104658586 104658641 -77756601 + L2 LINE L2 2971 3068 -245 408 55 0 0 chr6 104658673 104658728 -77756514 + (TG)n Simple_repeat Simple_repeat 2 56 0 641 298 28 36 chr6 104660471 104660719 -77754523 + MIR SINE MIR 13 258 -4 25 83 0 0 chr6 104661007 104661067 -77754175 + AT_rich Low_complexity Low_complexity 1 60 0 371 308 68 4 chr6 104661193 104661427 -77753815 - L1ME4a LINE L1 -256 5865 5617 322 301 139 17 chr6 104661463 104661636 -77753606 - L1ME4a LINE L1 -637 5484 5291 189 0 0 0 chr6 104663053 104663074 -77752168 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 26 64 0 0 chr6 104663426 104663473 -77751769 + AT_rich Low_complexity Low_complexity 1 47 0 343 217 14 0 chr6 104663490 104663559 -77751683 + MIR SINE MIR 173 242 -20 335 363 0 0 chr6 104664124 104664215 -77751027 + L2 LINE L2 3146 3236 -36 22 0 0 0 chr6 104664332 104664354 -77750888 + AT_rich Low_complexity Low_complexity 1 22 0 267 93 0 0 chr6 104664563 104664606 -77750636 + (TC)n Simple_repeat Simple_repeat 2 44 0 251 234 28 83 chr6 104664610 104664755 -77750487 - L1MCc LINE L1 -5113 1310 1174 263 301 18 35 chr6 104664976 104665089 -77750153 + MLT1I LTR MaLR 114 224 -185 1435 172 44 99 chr6 104665093 104665312 -77749930 - MLT1B LTR MaLR 0 390 203 4921 128 68 9 chr6 104665312 104666165 -77749077 + MER4D LTR ERV1 1 903 0 1435 172 44 99 chr6 104666165 104666358 -77748884 - MLT1B LTR MaLR -187 203 1 469 241 0 68 chr6 104666374 104666536 -77748706 + MLT1I LTR MaLR 241 391 -18 1113 222 38 43 chr6 104666601 104667015 -77748227 + MLT1C LTR MaLR 1 467 0 23 0 0 0 chr6 104667514 104667537 -77747705 + AT_rich Low_complexity Low_complexity 1 23 0 540 269 138 20 chr6 104668248 104668747 -77746495 - HAL1b LINE L1 -7 1341 784 885 272 153 40 chr6 104668798 104669342 -77745900 + MLT1L LTR MaLR 1 605 -10 265 268 6 89 chr6 104669574 104669742 -77745500 - L2 LINE L2 -123 3190 3037 268 232 111 0 chr6 104671406 104671505 -77743737 + MLT1G LTR MaLR 10 119 -471 681 69 0 40 chr6 104671510 104671611 -77743631 - MLT2A2 LTR ERVL -10 443 347 1108 120 0 0 chr6 104671613 104671792 -77743450 + AluSg/x SINE Alu 132 310 0 1749 122 95 51 chr6 104671798 104672247 -77742995 - MLT2A2 LTR ERVL -93 461 1 546 245 59 63 chr6 104672258 104672607 -77742635 + MLT1G LTR MaLR 123 590 0 324 0 0 0 chr6 104672769 104672805 -77742437 + (TTG)n Simple_repeat Simple_repeat 2 37 0 556 270 152 17 chr6 104674032 104674328 -77740914 - MLT1J2 LTR MaLR -30 420 85 542 185 34 8 chr6 104674446 104674565 -77740677 + MLT1D LTR MaLR 1 122 -383 407 308 56 0 chr6 104675669 104675776 -77739466 - L2 LINE L2 0 3272 3160 1726 181 3 3 chr6 104676577 104676865 -77738377 + AluJo SINE Alu 1 288 -24 293 145 16 0 chr6 104676865 104676927 -77738315 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 1672 166 163 38 chr6 104677166 104677613 -77737629 + MLT1D LTR MaLR 1 503 -2 219 373 78 10 chr6 104678067 104678169 -77737073 + L2 LINE L2 3154 3262 -10 6972 56 10 2 chr6 104678207 104679561 -77735681 + L1PA7 LINE L1 4799 6154 0 282 160 0 0 chr6 104680981 104681031 -77734211 + (CA)n Simple_repeat Simple_repeat 2 51 0 213 211 0 0 chr6 104681102 104681154 -77734088 + (TG)n Simple_repeat Simple_repeat 1 52 0 195 129 0 0 chr6 104683271 104683302 -77731940 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 517 186 11 147 chr6 104683582 104683670 -77731572 - MER45A DNA AcHobo -1403 178 124 1935 69 0 16 chr6 104683670 104683916 -77731326 + AluY SINE Alu 1 242 -69 517 186 11 147 chr6 104683916 104684004 -77731238 - MER45A DNA AcHobo -1457 124 26 1199 83 0 0 chr6 104684244 104684400 -77730842 - AluY SINE Alu -8 303 148 3270 143 22 2 chr6 104684488 104684998 -77730244 + MLT2B1 LTR ERVL 1 520 0 207 283 33 0 chr6 104687009 104687069 -77728173 + MIR3 SINE MIR 96 157 -51 1927 181 13 20 chr6 104687167 104687537 -77727705 - MER67C LTR ERV1 -314 396 28 2155 112 0 10 chr6 104687537 104687841 -77727401 - AluSx SINE Alu -11 301 1 1927 181 13 20 chr6 104687841 104687867 -77727375 - MER67C LTR ERV1 -682 28 3 610 198 13 106 chr6 104688645 104688872 -77726370 - MER67C LTR ERV1 -18 692 487 554 250 128 0 chr6 104688882 104689054 -77726188 - MER67C LTR ERV1 -353 357 164 301 401 67 45 chr6 104689447 104689714 -77725528 - L2 LINE L2 -8 3264 2992 1931 166 0 0 chr6 104689775 104690070 -77725172 + AluJo SINE Alu 1 295 -17 1845 169 19 3 chr6 104690677 104690984 -77724258 - AluSx SINE Alu 0 312 1 1510 176 4 4 chr6 104691035 104691285 -77723957 + AluJo SINE Alu 24 273 -39 23 0 0 0 chr6 104691407 104691430 -77723812 + AT_rich Low_complexity Low_complexity 1 23 0 411 265 31 12 chr6 104691972 104692134 -77723108 - L1ME4a LINE L1 -2 6119 5955 238 325 104 13 chr6 104692234 104692542 -77722700 - L1ME4a LINE L1 -304 5817 5482 289 293 22 1 chr6 104692602 104692723 -77722519 + L1MA10 LINE L1 6017 6293 -24 1745 188 100 48 chr6 104693984 104694425 -77720817 + MLT2B1 LTR ERVL 57 520 0 321 219 323 0 chr6 104694463 104694559 -77720683 - L2 LINE L2 0 3313 3187 332 59 20 0 chr6 104695268 104695319 -77719923 + (TC)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr6 104695478 104695501 -77719741 + AT_rich Low_complexity Low_complexity 1 23 0 2404 68 0 10 chr6 104697193 104697504 -77717738 - AluY SINE Alu -3 308 1 333 279 10 19 chr6 104697971 104698075 -77717167 + L2 LINE L2 2440 2542 -772 838 295 16 8 chr6 104699339 104699593 -77715649 + L2 LINE L2 2538 2793 -521 277 347 42 46 chr6 104699620 104699905 -77715337 + L2 LINE L2 454 737 -2577 364 305 54 35 chr6 104700185 104700388 -77714854 + L2 LINE L2 1182 1388 -1926 1362 62 0 0 chr6 104700637 104700813 -77714429 + L1PA8 LINE L1 5994 6169 -3 498 259 123 42 chr6 104700816 104701198 -77714044 + L1M4 LINE L1 2154 2566 -3580 208 241 37 0 chr6 104701220 104701274 -77713968 - MIR SINE MIR -26 236 181 * 1793 272 51 41 chr6 104701272 104702045 -77713197 + L2 LINE L2 2294 3070 -243 478 173 29 72 chr6 104702229 104702368 -77712874 - MIR SINE MIR -73 189 57 1267 283 99 48 chr6 104702435 104702695 -77712547 + L1M4 LINE L1 2559 2804 -3342 2301 116 11 8 chr6 104702695 104703049 -77712193 - THE1A LTR MaLR 0 355 1 1267 283 99 48 chr6 104703049 104703155 -77712087 + L1M4 LINE L1 2804 2903 -3243 2242 112 3 10 chr6 104703155 104703469 -77711773 + AluSx SINE Alu 1 312 0 1267 283 99 48 chr6 104703469 104704009 -77711233 + L1M4 LINE L1 2903 3512 -2634 334 268 0 48 chr6 104704120 104704288 -77710954 + L1P LINE L1 3606 3765 -2381 2286 118 67 58 chr6 104704618 104705099 -77710143 + L1MA8 LINE L1 5807 6291 0 354 228 8 122 chr6 104705268 104705523 -77709719 + HAL1 LINE L1 2281 2506 -1 492 245 10 42 chr6 104705541 104705698 -77709544 + L1M4 LINE L1 3849 4000 -2146 2543 111 67 10 chr6 104705698 104706103 -77709139 + MSTA LTR MaLR 1 428 0 492 245 10 42 chr6 104706103 104706137 -77709105 + L1M4 LINE L1 4000 4034 -2112 614 258 38 7 chr6 104706142 104706351 -77708891 - MIR SINE MIR -2 260 4 316 329 65 13 chr6 104706351 104706506 -77708736 + L1M4 LINE L1 4029 4191 -1955 1017 197 6 0 chr6 104706509 104706687 -77708555 + AluJo SINE Alu 1 179 -133 282 311 61 20 chr6 104706711 104707119 -77708123 + L1M4 LINE L1 4182 4606 -1540 22 56 0 0 chr6 104707163 104707199 -77708043 + AT_rich Low_complexity Low_complexity 1 36 0 423 351 54 5 chr6 104707402 104707607 -77707635 - L2 LINE L2 -1308 2006 1792 293 283 25 25 chr6 104708401 104708599 -77706643 - L1MC4 LINE L1 -1 8041 7844 257 253 24 0 chr6 104708649 104708732 -77706510 - L1ME2 LINE L1 -10 6154 6070 3406 163 14 14 chr6 104709292 104709919 -77705323 - MER52A LTR ERV1 0 1755 1129 1610 158 110 122 chr6 104709915 104710497 -77704745 - MER52A LTR ERV1 -282 1012 379 * 438 175 2 45 chr6 104710490 104710599 -77704643 - MER52C LTR ERV1 -1190 102 1 * 546 157 0 0 chr6 104710837 104710926 -77704316 + FLAM_A SINE Alu 41 129 -13 201 147 0 0 chr6 104712367 104712401 -77702841 + (CTA)n Simple_repeat Simple_repeat 3 36 0 198 0 0 0 chr6 104712399 104712421 -77702821 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 392 236 136 0 chr6 104712954 104713064 -77702178 + L2 LINE L2 3181 3305 -8 1804 184 0 10 chr6 104713346 104713655 -77701587 - AluJo SINE Alu -2 310 5 21 71 0 0 chr6 104713684 104713726 -77701516 + AT_rich Low_complexity Low_complexity 1 42 0 1438 285 123 16 chr6 104713996 104714734 -77700508 - L1MC4a LINE L1 -1732 6076 5260 241 293 81 0 chr6 104714862 104714961 -77700281 - MIR SINE MIR -74 188 82 184 263 70 35 chr6 104715068 104715182 -77700060 - MIR SINE MIR -53 209 92 418 141 0 13 chr6 104715183 104715261 -77699981 - L1P3 LINE L1 -5096 1365 1289 1150 263 25 28 chr6 104715734 104716335 -77698907 + L1PA10 LINE L1 78 797 -5078 * 6195 120 13 76 chr6 104716333 104718423 -77696819 + L1PA10 LINE L1 1628 3849 -2634 2184 140 3 0 chr6 104718423 104718731 -77696511 + AluSx SINE Alu 1 309 -3 6195 120 13 76 chr6 104718731 104719831 -77695411 + L1PA10 LINE L1 3849 5017 -1466 6597 28 3 1 chr6 104719831 104720612 -77694630 + L1PA5 LINE L1 5365 6146 -8 6195 120 13 76 chr6 104720612 104722625 -77692617 + L1PA10 LINE L1 5017 6483 0 25 65 0 0 chr6 104722748 104722794 -77692448 + AT_rich Low_complexity Low_complexity 1 46 0 1901 164 0 7 chr6 104722962 104723266 -77691976 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr6 104723299 104723323 -77691919 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 104723336 104723357 -77691885 + AT_rich Low_complexity Low_complexity 1 21 0 246 62 0 0 chr6 104724646 104724678 -77690564 + (A)n Simple_repeat Simple_repeat 1 32 0 278 104 0 21 chr6 104724752 104724800 -77690442 + (TTCTCC)n Simple_repeat Simple_repeat 3 49 0 920 167 6 19 chr6 104724813 104724969 -77690273 - AluSg/x SINE Alu -38 274 121 2515 54 0 0 chr6 104725142 104725440 -77689802 + AluY SINE Alu 1 298 -13 2489 18 0 0 chr6 104725440 104725781 -77689461 + L1PA4 LINE L1 5842 6149 -6 21 36 0 0 chr6 104726186 104726214 -77689028 + AT_rich Low_complexity Low_complexity 1 28 0 318 287 43 0 chr6 104726332 104726447 -77688795 - MLT1L LTR MaLR 0 615 496 310 289 162 61 chr6 104726570 104726798 -77688444 - MLT1L LTR MaLR -355 260 10 27 29 0 0 chr6 104727031 104727065 -77688177 + AT_rich Low_complexity Low_complexity 1 34 0 385 269 115 75 chr6 104727386 104727822 -77687420 + L1ME LINE L1 5274 5721 -400 1730 153 7 28 chr6 104727877 104728165 -77687077 + AluJo SINE Alu 1 282 -30 240 328 74 16 chr6 104728789 104728911 -77686331 - MIR SINE MIR -48 214 86 191 239 239 11 chr6 104729047 104729135 -77686107 - L2 LINE L2 -4 3309 3202 240 344 104 42 chr6 104729140 104729352 -77685890 - L2 LINE L2 -1921 1393 1169 3080 185 39 76 chr6 104729436 104730182 -77685060 + MER50 LTR ERV1 1 718 -16 728 260 85 85 chr6 104732941 104733387 -77681855 + MLT1J2 LTR MaLR 5 450 0 1247 238 85 23 chr6 104733924 104734360 -77680882 - MER74A LTR ERVL -12 546 5 2856 133 41 12 chr6 104735423 104735906 -77679336 + LOR1a LTR ERV1 1 497 0 1972 147 3 3 chr6 104736327 104736627 -77678615 - AluSx SINE Alu -12 300 1 287 240 94 21 chr6 104737771 104737867 -77677375 - L2 LINE L2 -32 3240 3138 33 0 0 0 chr6 104738446 104738479 -77676763 + AT_rich Low_complexity Low_complexity 1 33 0 243 308 31 64 chr6 104738648 104738707 -77676535 + MIR SINE MIR 13 72 -136 2643 40 0 0 chr6 104738707 104739008 -77676234 - AluY SINE Alu -10 301 1 243 308 31 64 chr6 104739008 104739090 -77676152 + MIR SINE MIR 72 136 -72 2056 115 7 0 chr6 104739544 104739843 -77675399 - AluSx SINE Alu 0 301 1 216 0 0 0 chr6 104739972 104739996 -77675246 + (A)n Simple_repeat Simple_repeat 1 24 0 323 259 93 19 chr6 104740010 104740118 -77675124 - L2 LINE L2 -16 3297 3182 22 0 0 0 chr6 104741823 104741845 -77673397 + AT_rich Low_complexity Low_complexity 1 22 0 201 252 171 63 chr6 104742615 104742726 -77672516 - MER5A DNA MER1_type -27 162 40 * 331 229 181 29 chr6 104742642 104742747 -77672495 + MER5A DNA MER1_type 60 180 -9 375 211 0 14 chr6 104743843 104743914 -77671328 - MIR3 SINE MIR -24 184 115 1706 151 16 71 chr6 104744475 104744786 -77670456 + AluJb SINE Alu 1 294 -18 514 251 231 0 chr6 104744971 104745170 -77670072 + MIR SINE MIR 7 251 -11 25 31 0 0 chr6 104747733 104747765 -77667477 + AT_rich Low_complexity Low_complexity 1 32 0 2239 80 42 0 chr6 104748760 104749048 -77666194 - AluSp SINE Alu -13 300 1 233 143 0 89 chr6 104749848 104749904 -77665338 - L2 LINE L2 0 3313 3263 582 307 110 58 chr6 104749976 104750080 -77665162 + HAL1 LINE L1 52 149 -2358 1579 99 0 43 chr6 104750080 104750313 -77664929 - AluY SINE Alu -5 306 84 582 307 110 58 chr6 104750313 104750937 -77664305 + HAL1 LINE L1 149 818 -1689 726 159 0 0 chr6 104751789 104751896 -77663346 - AluJb SINE Alu -14 298 192 327 314 108 15 chr6 104752092 104752499 -77662743 - HAL1 LINE L1 -21 2486 2042 250 202 64 37 chr6 104752520 104752629 -77662613 - L1P LINE L1 -762 5393 5282 1983 163 77 8 chr6 104752681 104753044 -77662198 - MSTB LTR MaLR -38 388 1 2450 244 111 11 chr6 104753067 104754171 -77661071 + ERVL LTR ERVL 2045 3302 -2462 1484 278 48 30 chr6 104754166 104754670 -77660572 + ERVL LTR ERVL 3403 3915 -1849 * 1495 266 37 8 chr6 104754668 104755051 -77660191 + ERVL LTR ERVL 4024 4417 -1347 721 252 102 15 chr6 104755359 104755565 -77659677 - MIR SINE MIR -38 224 1 1587 51 0 0 chr6 104756328 104756524 -77658718 - L1PA3 LINE L1 -3 6152 5957 285 227 11 11 chr6 104756997 104757085 -77658157 + (TA)n Simple_repeat Simple_repeat 1 88 0 310 303 99 12 chr6 104757293 104757455 -77657787 + MIR SINE MIR 34 209 -53 311 210 109 99 chr6 104757557 104757766 -77657476 + L1ME4a LINE L1 5539 5744 -377 2079 135 3 0 chr6 104757766 104758062 -77657180 + AluSx SINE Alu 5 301 -11 311 210 109 99 chr6 104758062 104758259 -77656983 + L1ME4a LINE L1 5744 5964 -157 495 0 0 0 chr6 104759386 104759441 -77655801 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1489 190 150 5 chr6 104760201 104760252 -77654990 - L1 LINE L1 -3183 2963 2921 4025 156 17 0 chr6 104760252 104760968 -77654274 - L1MA4A LINE L1 0 6303 5576 1489 190 150 5 chr6 104760968 104761290 -77653952 - L1 LINE L1 -3225 2921 2536 522 213 0 0 chr6 104761747 104761841 -77653401 - MIR SINE MIR -124 138 45 537 265 143 13 chr6 104761932 104762162 -77653080 - MIR SINE MIR -1 261 2 2049 171 29 14 chr6 104762890 104763305 -77651937 + L1MA10 LINE L1 5913 6333 -1 363 261 46 14 chr6 104763960 104764120 -77651122 + L1ME LINE L1 2 169 -5901 372 275 139 78 chr6 104765640 104765772 -77649470 - L1MC4a LINE L1 -1907 5901 5779 1546 195 3 14 chr6 104765772 104766085 -77649157 - AluJb SINE Alu 0 312 3 372 275 139 78 chr6 104766085 104766260 -77648982 - L1MC4a LINE L1 -2029 5779 5574 305 253 93 11 chr6 104766333 104766515 -77648727 + L1ME4a LINE L1 5737 5933 -188 218 247 117 13 chr6 104766515 104766592 -77648650 + MIR SINE MIR 108 192 -70 2329 76 0 0 chr6 104766595 104766886 -77648356 + AluY SINE Alu 1 291 -20 378 214 199 70 chr6 104767373 104767574 -77647668 + MIR SINE MIR 36 262 0 21 0 0 0 chr6 104770612 104770633 -77644609 + AT_rich Low_complexity Low_complexity 1 21 0 212 339 15 0 chr6 104771092 104771157 -77644085 - L2 LINE L2 -6 3266 3201 1229 327 55 87 chr6 104771163 104771406 -77643836 + L1ME3 LINE L1 5330 5579 -583 827 154 0 22 chr6 104771406 104771542 -77643700 - FLAM_C SINE Alu 0 133 1 1229 327 55 87 chr6 104771542 104772152 -77643090 + L1ME3 LINE L1 5579 6156 -6 2194 105 0 3 chr6 104773136 104773432 -77641810 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr6 104774809 104774830 -77640412 + AT_rich Low_complexity Low_complexity 1 21 0 2187 125 0 0 chr6 104776580 104776883 -77638359 + AluSq SINE Alu 3 305 -8 512 282 48 60 chr6 104778258 104778510 -77636732 + MIR SINE MIR 14 262 0 184 325 190 18 chr6 104779809 104779972 -77635270 + MIR3 SINE MIR 15 205 -3 2345 143 5 30 chr6 104780115 104780515 -77634727 + MLT1B LTR MaLR 1 390 0 293 340 120 10 chr6 104781373 104781573 -77633669 - L2 LINE L2 -456 2858 2637 22 0 0 0 chr6 104781708 104781730 -77633512 + AT_rich Low_complexity Low_complexity 1 22 0 452 256 82 14 chr6 104781731 104781897 -77633345 - L1ME3 LINE L1 -2 6164 5995 * 797 152 58 0 chr6 104781895 104782033 -77633209 + L1MC4a LINE L1 7216 7361 -447 937 253 90 89 chr6 104782033 104782184 -77633058 + MLT1G1 LTR MaLR 14 163 -432 2381 98 0 3 chr6 104782184 104782489 -77632753 + AluSq SINE Alu 1 304 -9 937 253 90 89 chr6 104782489 104782875 -77632367 + MLT1G1 LTR MaLR 163 592 -3 530 190 52 9 chr6 104782890 104783006 -77632236 + L2 LINE L2 3192 3312 -1 1723 229 71 62 chr6 104784545 104785375 -77629867 + L1ME3 LINE L1 5171 6013 -149 747 120 49 35 chr6 104785543 104785685 -77629557 + L1 LINE L1 4558 4701 -1445 2119 125 0 3 chr6 104785700 104785996 -77629246 + AluSq SINE Alu 1 295 -18 377 244 118 0 chr6 104786066 104786201 -77629041 + L1ME4a LINE L1 5785 5935 -186 6813 62 18 4 chr6 104786244 104787217 -77628025 + L1PA8 LINE L1 5187 6172 0 192 136 0 0 chr6 104787245 104787273 -77627969 + (A)n Simple_repeat Simple_repeat 1 31 -13 1687 78 45 16 chr6 104787273 104787517 -77627725 + AluY SINE Alu 53 303 -8 192 136 0 0 chr6 104787517 104787532 -77627710 + (A)n Simple_repeat Simple_repeat 30 44 0 487 297 73 24 chr6 104788587 104788752 -77626490 + MIR SINE MIR 60 232 -30 361 336 31 8 chr6 104790152 104790280 -77624962 - L2 LINE L2 -2 3270 3140 5777 145 88 25 chr6 104790390 104791521 -77623721 + Tigger3b DNA MER2_type 1 1203 -28 22 56 0 0 chr6 104792158 104792194 -77623048 + AT_rich Low_complexity Low_complexity 1 36 0 180 111 0 0 chr6 104792682 104792709 -77622533 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 25 51 0 0 chr6 104793504 104793543 -77621699 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 104794306 104794327 -77620915 + AT_rich Low_complexity Low_complexity 1 21 0 273 287 150 47 chr6 104794422 104795022 -77620220 + L1MEd LINE L1 636 1297 -4908 1430 168 114 54 chr6 104795610 104795964 -77619278 - MLT1B LTR MaLR -14 579 1 851 288 114 17 chr6 104796122 104796930 -77618312 + L1MEd LINE L1 2149 2999 -3216 1625 200 0 23 chr6 104796934 104797234 -77618008 + AluJo SINE Alu 4 296 -16 206 219 0 62 chr6 104797333 104797397 -77617845 + A-rich Low_complexity Low_complexity 2 61 0 253 207 0 0 chr6 104797405 104797463 -77617779 - L1M4 LINE L1 -2917 3229 3172 302 206 30 84 chr6 104797496 104797627 -77617615 + L1ME3A LINE L1 5821 5944 -226 203 274 16 0 chr6 104798474 104798536 -77616706 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 249 270 0 67 chr6 104799049 104799138 -77616104 + L1ME4a LINE L1 5601 5683 -438 2043 132 6 0 chr6 104799145 104799456 -77615786 + AluSq SINE Alu 1 313 0 244 191 107 0 chr6 104799521 104799605 -77615637 + L1ME4a LINE L1 5770 5862 -259 348 203 109 55 chr6 104799699 104799777 -77615465 + L1ME4a LINE L1 5986 6075 -46 1761 174 0 29 chr6 104799777 104800093 -77615149 - AluJb SINE Alu -5 307 1 348 203 109 55 chr6 104800093 104800142 -77615100 + L1ME4a LINE L1 6075 6120 -1 1187 88 6 0 chr6 104800155 104800325 -77614917 + L1PA13 LINE L1 5992 6162 -1 188 172 0 46 chr6 104802848 104802935 -77612307 + (TA)n Simple_repeat Simple_repeat 1 83 0 210 219 0 0 chr6 104804940 104804981 -77610261 + (CGG)n Simple_repeat Simple_repeat 2 42 0 285 246 36 18 chr6 104805104 104805214 -77610028 + GA-rich Low_complexity Low_complexity 1 112 0 305 279 130 68 chr6 104806081 104806242 -77609000 + MER91A DNA MER1_type 3 173 -23 689 282 114 92 chr6 104806495 104806617 -77608625 - MLT1K LTR MaLR -6 582 464 297 0 0 0 chr6 104806617 104806650 -77608592 + (CA)n Simple_repeat Simple_repeat 1 33 0 689 282 114 92 chr6 104806650 104807095 -77608147 - MLT1K LTR MaLR -124 464 2 336 291 77 0 chr6 104807757 104807874 -77607368 - MIR3 SINE MIR -2 206 81 193 330 136 25 chr6 104808456 104808574 -77606668 + MIR SINE MIR 10 140 -122 751 200 41 29 chr6 104808643 104808813 -77606429 - MER5B DNA MER1_type -6 172 1 642 283 74 25 chr6 104809654 104810060 -77605182 + L1MC5 LINE L1 7311 7736 -225 2317 78 3 16 chr6 104811073 104811381 -77603861 - AluY SINE Alu -7 304 1 827 145 8 0 chr6 104811508 104811632 -77603610 + FLAM_C SINE Alu 1 125 -18 252 269 28 0 chr6 104811643 104811751 -77603491 - MER113 DNA MER1_type? -410 111 1 16497 187 25 25 chr6 104812325 104816315 -77598927 + L1PA15 LINE L1 2816 6816 -787 1581 180 0 43 chr6 104816315 104816458 -77598784 + AluJb SINE Alu 1 126 -186 2134 107 23 3 chr6 104816458 104816758 -77598484 + AluSx SINE Alu 1 306 -6 1581 180 0 43 chr6 104816758 104816914 -77598328 + AluJb SINE Alu 126 287 -25 16497 187 25 25 chr6 104816914 104817687 -77597555 + L1PA15 LINE L1 6816 7588 -15 459 256 261 35 chr6 104818088 104818274 -77596968 - L2 LINE L2 -54 3259 3116 2467 48 0 19 chr6 104818274 104818584 -77596658 + AluY SINE Alu 1 304 -7 459 256 261 35 chr6 104818584 104818691 -77596551 - L2 LINE L2 -197 3116 3035 2604 20 0 3 chr6 104818691 104818986 -77596256 + AluYa5 SINE Alu 6 299 -12 459 256 261 35 chr6 104818986 104819039 -77596203 - L2 LINE L2 -278 3035 2833 376 258 61 0 chr6 104819085 104819217 -77596025 - MER103 DNA DNA -19 147 8 22 35 0 0 chr6 104819848 104819877 -77595365 + AT_rich Low_complexity Low_complexity 1 29 0 1982 158 111 35 chr6 104820021 104820446 -77594796 + MSTB2 LTR MaLR 1 457 0 3216 148 39 10 chr6 104820711 104821231 -77594011 + MER44D DNA MER2_type 7 596 -9 734 378 47 20 chr6 104821265 104821905 -77593337 - ERVL LTR ERVL -3606 2158 1502 890 228 17 0 chr6 104822439 104822619 -77592623 + MER5A DNA MER1_type 4 186 -3 4454 83 18 12 chr6 104823557 104824211 -77591031 - L1PB2 LINE L1 -1 6150 5493 193 366 75 12 chr6 104825643 104825804 -77589438 - L2 LINE L2 -168 3145 2975 349 211 110 0 chr6 104825967 104826076 -77589166 + L1ME4a LINE L1 5311 5431 -690 2086 112 70 48 chr6 104826235 104826404 -77588838 + THE1B LTR MaLR 1 165 -199 2152 120 0 0 chr6 104826404 104826695 -77588547 + AluSc SINE Alu 1 291 -18 2086 112 70 48 chr6 104826695 104826881 -77588361 + THE1B LTR MaLR 165 364 0 11955 87 3 1 chr6 104826881 104828458 -77586784 + THE1B-int LTR MaLR 1 1580 0 440 103 192 0 chr6 104828458 104828536 -77586706 + THE1B LTR MaLR 1 93 -271 855 114 0 0 chr6 104828537 104828660 -77586582 - THE1-int LTR MaLR -398 1182 1060 1459 144 42 23 chr6 104828660 104828924 -77586318 + THE1B LTR MaLR 96 364 0 558 241 110 28 chr6 104828924 104829215 -77586027 + L1ME4a LINE L1 5806 6120 -1 29 47 0 0 chr6 104830822 104830865 -77584377 + AT_rich Low_complexity Low_complexity 1 43 0 291 96 0 19 chr6 104830924 104830976 -77584266 - L1MA8 LINE L1 -20 6271 6221 1733 186 3 20 chr6 104831492 104831793 -77583449 + AluJo SINE Alu 1 296 -16 484 292 134 5 chr6 104833152 104833354 -77581888 + MIR SINE MIR 14 241 -21 21 71 0 0 chr6 104834157 104834199 -77581043 + AT_rich Low_complexity Low_complexity 1 42 0 356 258 70 23 chr6 104836390 104836518 -77578724 - MER94 DNA DNA 0 134 1 208 287 139 28 chr6 104836891 104836999 -77578243 + MER5B DNA MER1_type 51 170 -8 477 317 149 5 chr6 104837067 104837288 -77577954 + MIR SINE MIR 2 254 -8 247 299 103 40 chr6 104838069 104838243 -77576999 - MIR SINE MIR -71 191 7 2122 143 107 13 chr6 104839587 104839978 -77575264 + MSTA LTR MaLR 1 428 0 1082 334 104 21 chr6 104840654 104841653 -77573589 + L2 LINE L2 1894 2975 -339 2427 182 22 0 chr6 104842185 104842631 -77572611 + Tigger7 DNA MER2_type 42 497 -236 709 128 48 0 chr6 104842658 104842783 -77572459 + Tigger7 DNA MER2_type 2457 2587 0 330 310 110 19 chr6 104842857 104843338 -77571904 + L1M4 LINE L1 4533 5057 -1089 351 158 209 70 chr6 104843559 104843717 -77571525 - MER106B DNA MER1_type -17 1042 40 360 340 57 67 chr6 104844007 104844322 -77570920 + L2 LINE L2 2928 3239 -33 2192 87 7 0 chr6 104845024 104845324 -77569918 - AluSx SINE Alu -10 302 1 22 0 0 0 chr6 104845331 104845353 -77569889 + AT_rich Low_complexity Low_complexity 1 22 0 431 234 88 15 chr6 104846199 104846336 -77568906 - MER5B DNA MER1_type -28 150 4 428 204 165 0 chr6 104848048 104848151 -77567091 + L2 LINE L2 3189 3308 -5 344 315 135 10 chr6 104848190 104848390 -77566852 + MIR SINE MIR 22 246 -16 29 0 0 0 chr6 104848520 104848549 -77566693 + AT_rich Low_complexity Low_complexity 1 29 0 1626 187 152 42 chr6 104849278 104849733 -77565509 - MLT1D LTR MaLR 0 505 1 5493 110 13 15 chr6 104849747 104851153 -77564089 - L1PA11 LINE L1 -82 6092 4690 30 59 0 0 chr6 104851339 104851390 -77563852 + AT_rich Low_complexity Low_complexity 1 51 0 233 154 0 0 chr6 104851408 104851447 -77563795 + MLT1E LTR MaLR 95 133 -460 232 61 0 61 chr6 104851456 104851505 -77563737 + (AATAG)n Simple_repeat Simple_repeat 5 50 0 738 228 38 87 chr6 104851510 104851810 -77563432 + MLT1E LTR MaLR 140 469 -155 230 319 9 0 chr6 104851814 104851930 -77563312 + L1M4 LINE L1 3890 4006 -2140 249 298 96 28 chr6 104852051 104852159 -77563083 + L1M4 LINE L1 4234 4333 -1813 2001 148 6 3 chr6 104852159 104852470 -77562772 + AluSx SINE Alu 1 312 0 249 298 96 28 chr6 104852470 104852892 -77562350 + L1M4 LINE L1 4333 4800 -1346 583 261 78 20 chr6 104853557 104853802 -77561440 + MIR SINE MIR 4 262 0 631 197 15 8 chr6 104854283 104854415 -77560827 + MLT1E LTR MaLR 492 624 0 339 261 12 37 chr6 104855276 104855437 -77559805 - L1MC5 LINE L1 -44 7917 7761 443 203 0 0 chr6 104856082 104856161 -77559081 - L2 LINE L2 -327 2986 2908 210 222 127 0 chr6 104856755 104856818 -77558424 - MIR3 SINE MIR -8 200 130 231 276 0 58 chr6 104857261 104857348 -77557894 - MLT1K LTR MaLR -415 173 92 381 250 17 50 chr6 104857670 104857790 -77557452 - MIR SINE MIR -73 135 20 721 175 5 7 chr6 104859166 104859344 -77555898 - MLT1C LTR MaLR 0 467 211 1024 319 118 13 chr6 104859625 104860301 -77554941 + L2 LINE L2 1726 2472 -842 512 283 89 21 chr6 104860624 104860815 -77554427 + MIR SINE MIR 59 262 0 240 329 58 29 chr6 104860831 104860968 -77554274 + L2 LINE L2 3011 3151 -121 555 229 156 11 chr6 104861514 104861693 -77553549 + MER63A DNA MER1_type 1 205 -5 1172 270 40 50 chr6 104861947 104862428 -77552814 + MLT1D LTR MaLR 29 504 -1 2143 145 6 0 chr6 104862778 104863096 -77552146 - 7SLRNA srpRNA srpRNA 0 320 1 287 319 12 117 chr6 104863359 104863522 -77551720 - L2 LINE L2 -6 3266 3121 1263 229 14 86 chr6 104863862 104864074 -77551168 + MER34 LTR ERV1 1 227 -315 3120 103 12 0 chr6 104864074 104864503 -77550739 - MER57B LTR ERV1 0 434 1 1263 229 14 86 chr6 104864503 104864874 -77550368 + MER34 LTR ERV1 227 542 0 771 246 37 0 chr6 104866004 104866191 -77549051 - MER20 DNA MER1_type -25 194 1 23 54 0 0 chr6 104867781 104867818 -77547424 + AT_rich Low_complexity Low_complexity 1 37 0 192 97 0 0 chr6 104868660 104868691 -77546551 + (CA)n Simple_repeat Simple_repeat 2 32 0 327 288 198 23 chr6 104868697 104868874 -77546368 - L1MC4a LINE L1 -1862 5946 5739 222 180 40 0 chr6 104868875 104868925 -77546317 + CT-rich Low_complexity Low_complexity 1 52 0 374 282 81 60 chr6 104868944 104869192 -77546050 - L1MC4a LINE L1 -420 5701 5449 296 176 222 9 chr6 104870087 104870195 -77545047 + MER103 DNA DNA 35 165 -1 258 246 63 40 chr6 104870473 104870599 -77544643 + LTR67 LTR ERVL 418 546 -11 270 219 16 0 chr6 104871077 104871141 -77544101 - L2 LINE L2 -6 3307 3243 317 293 133 60 chr6 104872399 104872566 -77542676 - L1M2 LINE L1 -5443 1406 1253 180 0 0 0 chr6 104872566 104872586 -77542656 + (CGGGGG)n Simple_repeat Simple_repeat 5 24 0 317 293 133 60 chr6 104872586 104872743 -77542499 - L1M2 LINE L1 -5596 1253 560 384 130 0 0 chr6 104872886 104872955 -77542287 + (CA)n Simple_repeat Simple_repeat 1 69 0 24 32 0 0 chr6 104873439 104873470 -77541772 + AT_rich Low_complexity Low_complexity 1 31 0 408 261 211 0 chr6 104874524 104874685 -77540557 - MIR SINE MIR -50 212 18 274 274 65 0 chr6 104876015 104876077 -77539165 - MIR SINE MIR -80 182 117 603 310 67 5 chr6 104878404 104878646 -77536596 + MIR SINE MIR 3 256 -6 1702 183 7 14 chr6 104880676 104880966 -77534276 - AluJo SINE Alu -19 293 6 196 214 162 68 chr6 104882052 104882169 -77533073 + MIR SINE MIR 85 212 -50 180 136 68 68 chr6 104882296 104882340 -77532902 - MER5A DNA MER1_type -26 163 120 1053 275 99 0 chr6 104884517 104884862 -77530380 + L2 LINE L2 2384 2762 -552 479 296 8 70 chr6 104884907 104885150 -77530092 + L2 LINE L2 2910 3137 -176 737 219 21 17 chr6 104885166 104885399 -77529843 - L1ME1 LINE L1 -4 6162 5929 198 0 0 0 chr6 104886731 104886753 -77528489 + (CAG)n Simple_repeat Simple_repeat 3 24 0 445 363 54 5 chr6 104886769 104886992 -77528250 + MIR SINE MIR 26 259 -3 408 328 8 0 chr6 104887383 104887505 -77527737 - L2 LINE L2 -6 3266 3144 532 326 123 61 chr6 104887905 104888663 -77526579 - L2 LINE L2 -631 2683 1879 21 0 0 0 chr6 104889253 104889274 -77525968 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr6 104890755 104890792 -77524450 + (TG)n Simple_repeat Simple_repeat 1 37 0 578 221 0 6 chr6 104891137 104891295 -77523947 + (CA)n Simple_repeat Simple_repeat 2 158 0 360 253 81 0 chr6 104891634 104891733 -77523509 - MIR SINE MIR -59 149 43 183 367 0 13 chr6 104893498 104893577 -77521665 - L2 LINE L2 -99 3173 3096 22 0 0 0 chr6 104894274 104894296 -77520946 + AT_rich Low_complexity Low_complexity 1 22 0 642 238 21 48 chr6 104894425 104894614 -77520628 + L2 LINE L2 3120 3303 -10 1307 200 49 27 chr6 104895138 104895503 -77519739 + MER93b LTR ERV1 1 373 0 741 268 76 13 chr6 104895773 104895997 -77519245 - MIR SINE MIR -6 256 19 410 202 36 12 chr6 104896319 104896403 -77518839 + MIR SINE MIR 37 122 -140 362 330 182 8 chr6 104897100 104897358 -77517884 + L2 LINE L2 3011 3313 0 21 89 0 0 chr6 104897978 104898034 -77517208 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr6 104898171 104898201 -77517041 + AT_rich Low_complexity Low_complexity 1 30 0 254 93 0 23 chr6 104898696 104898739 -77516503 + (TGAG)n Simple_repeat Simple_repeat 1 42 0 27 62 0 0 chr6 104899186 104899234 -77516008 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr6 104899835 104899857 -77515385 + AT_rich Low_complexity Low_complexity 1 22 0 238 167 0 0 chr6 104899926 104899968 -77515274 - HAL1 LINE L1 -115 2392 2351 3473 131 37 14 chr6 104899969 104900498 -77514744 + MER6A DNA MER2_type 1 547 -318 2039 182 60 133 chr6 104900498 104901282 -77513960 + LTR8A LTR ERV1 1 727 0 3473 131 37 14 chr6 104901282 104901342 -77513900 + MER6A DNA MER2_type 547 604 -1 1703 237 90 44 chr6 104901343 104901449 -77513793 - HAL1 LINE L1 -155 2352 2252 2157 138 0 0 chr6 104901449 104901747 -77513495 + AluSx SINE Alu 2 299 -13 1703 237 90 44 chr6 104901747 104902386 -77512856 - HAL1 LINE L1 -255 2252 1573 1671 285 82 28 chr6 104902398 104902968 -77512274 - HAL1 LINE L1 -1574 933 302 1494 191 48 25 chr6 104902968 104903325 -77511917 - MLT1A1 LTR MaLR 0 365 1 1671 285 82 28 chr6 104903325 104903585 -77511657 - HAL1 LINE L1 -2205 302 58 21 0 0 0 chr6 104903605 104903626 -77511616 + AT_rich Low_complexity Low_complexity 1 21 0 2040 114 70 56 chr6 104903713 104903755 -77511487 - THE1B LTR MaLR 0 364 324 2353 105 0 0 chr6 104903755 104904059 -77511183 + AluSx SINE Alu 1 304 -8 2040 114 70 56 chr6 104904059 104904375 -77510867 - THE1B LTR MaLR -40 324 1 382 327 25 43 chr6 104904377 104904539 -77510703 - MIR SINE MIR -102 160 2 319 348 96 6 chr6 104904741 104904919 -77510323 + MIR SINE MIR 48 241 -21 235 353 43 52 chr6 104905171 104905287 -77509955 + L2 LINE L2 3153 3267 -5 21 0 0 0 chr6 104905608 104905629 -77509613 + AT_rich Low_complexity Low_complexity 1 21 0 268 276 29 9 chr6 104906161 104906266 -77508976 + MER94 DNA DNA 2 108 -26 550 300 73 17 chr6 104906420 104906653 -77508589 - L2 LINE L2 -191 3081 2836 2043 144 41 3 chr6 104907433 104907795 -77507447 - MLT1B LTR MaLR -14 376 1 391 318 93 16 chr6 104908077 104908206 -77507036 + MIR SINE MIR 14 152 -110 207 139 0 0 chr6 104908266 104908302 -77506940 + (CAT)n Simple_repeat Simple_repeat 2 37 0 586 188 40 69 chr6 104908403 104908605 -77506637 + MER34C LTR ERV1 307 502 -83 3972 132 82 26 chr6 104908684 104909420 -77505822 - MER4E LTR ERV1 0 779 3 1897 226 23 49 chr6 104909592 104910122 -77505120 - LTR31 LTR ERV1 0 619 104 223 333 142 14 chr6 104910782 104910923 -77504319 - MIR SINE MIR -14 248 90 1602 191 55 87 chr6 104911129 104911693 -77503549 - MER34C LTR ERV1 0 585 40 447 156 13 0 chr6 104911924 104912001 -77503241 - MER31B LTR ERV1 -388 78 1 2284 91 0 0 chr6 104912472 104912780 -77502462 + AluY SINE Alu 1 308 -3 2126 155 53 22 chr6 104912962 104913374 -77501868 - L1PA16 LINE L1 -9 6157 5733 29 47 0 0 chr6 104913954 104913997 -77501245 + AT_rich Low_complexity Low_complexity 1 43 0 306 194 0 0 chr6 104915504 104915576 -77499666 + (TA)n Simple_repeat Simple_repeat 1 72 0 306 115 0 0 chr6 104915575 104915627 -77499615 + (GA)n Simple_repeat Simple_repeat 2 53 0 511 280 81 21 chr6 104915699 104915885 -77499357 - L2 LINE L2 0 3313 3117 496 270 162 4 chr6 104916023 104916264 -77498978 - MARNA DNA Mariner -198 388 110 758 195 20 147 chr6 104916296 104916547 -77498695 + MER20 DNA MER1_type 1 219 0 821 352 92 38 chr6 104916723 104917643 -77497599 + L2 LINE L2 188 1157 -2157 843 329 199 14 chr6 104917878 104918770 -77496472 + L2 LINE L2 2212 3272 0 26 0 0 0 chr6 104918988 104919014 -77496228 + AT_rich Low_complexity Low_complexity 1 26 0 1307 184 23 23 chr6 104919876 104919954 -77495288 - MER33 DNA MER1_type -2267 318 241 2313 101 3 0 chr6 104919954 104920252 -77494990 - AluSq SINE Alu -14 299 1 1307 184 23 23 chr6 104920252 104920482 -77494760 - MER33 DNA MER1_type -2343 242 10 2250 107 3 0 chr6 104921831 104922122 -77493120 - AluSx SINE Alu -20 292 1 624 210 8 8 chr6 104922209 104922333 -77492909 + MIR SINE MIR 118 241 -21 205 348 0 0 chr6 104923899 104923968 -77491274 + GA-rich Low_complexity Low_complexity 2 70 0 2093 120 0 3 chr6 104924687 104924999 -77490243 - AluSx SINE Alu 0 311 1 448 241 39 112 chr6 104925217 104925449 -77489793 - MIR SINE MIR -12 250 36 13361 188 8 10 chr6 104926237 104928912 -77486330 - L1PA15 LINE L1 -3 7600 4931 2631 89 8 56 chr6 104928912 104929306 -77485936 - THE1C LTR MaLR 0 375 1 13361 188 8 10 chr6 104929306 104930672 -77484570 - L1PA15 LINE L1 -2672 4931 3564 * 33761 54 3 0 chr6 104930668 104935121 -77480121 - L1P LINE L1 -1681 4465 1 3047 32 0 0 chr6 104935121 104935526 -77479716 - L1P LINE L1 -2806 3340 2936 7641 27 0 0 chr6 104935526 104937213 -77478029 + L1PA4 LINE L1 4464 6150 -5 6284 251 45 30 chr6 104937213 104940614 -77474628 - L1PA15 LINE L1 -4007 3577 8 285 300 65 17 chr6 104940876 104941017 -77474225 - MIR SINE MIR -65 143 14 250 180 0 0 chr6 104941272 104941322 -77473920 - MLT1H LTR MaLR -4 545 496 1878 193 46 94 chr6 104941725 104942270 -77472972 - LTR40a LTR ERVL 0 519 1 183 372 55 35 chr6 104942291 104942436 -77472806 + L2 LINE L2 3165 3312 -1 333 141 129 94 chr6 104943017 104943102 -77472140 + L2 LINE L2 3172 3259 -13 284 317 84 30 chr6 104943132 104943299 -77471943 + MIR SINE MIR 84 259 -3 180 0 0 0 chr6 104944480 104944500 -77470742 + (CAA)n Simple_repeat Simple_repeat 2 21 0 522 274 7 20 chr6 104944821 104944974 -77470268 - MIR SINE MIR 0 262 112 1379 188 38 0 chr6 104945566 104945806 -77469436 + AluJo SINE Alu 1 249 -63 291 136 0 0 chr6 104945860 104945904 -77469338 - FRAM/FAM SINE Alu -100 66 23 21 36 0 0 chr6 104946258 104946286 -77468956 + AT_rich Low_complexity Low_complexity 1 28 0 1747 196 0 0 chr6 104947218 104947514 -77467728 + AluJb SINE Alu 5 300 -12 23 108 0 0 chr6 104947742 104947835 -77467407 + AT_rich Low_complexity Low_complexity 1 93 0 206 328 0 35 chr6 104947936 104947994 -77467248 - L2 LINE L2 -8 3264 3209 397 165 25 13 chr6 104948367 104948446 -77466796 + MER5C DNA MER1_type 4 83 -241 2974 162 39 5 chr6 104948857 104949450 -77465792 + L1MC1 LINE L1 5715 6327 -6 28 0 0 0 chr6 104949450 104949478 -77465764 + AT_rich Low_complexity Low_complexity 1 28 0 1071 203 19 14 chr6 104949545 104949780 -77465462 - AluJb SINE Alu 0 312 91 1381 229 83 29 chr6 104950046 104950421 -77464821 - MLT2B1 LTR ERVL -11 509 115 15117 197 17 17 chr6 104950561 104956073 -77459169 - L1PA15 LINE L1 0 6816 1297 2928 233 33 29 chr6 104956254 104957013 -77458229 - L1PA15 LINE L1 -6025 762 1 254 335 78 37 chr6 104957092 104957283 -77457959 + MIR SINE MIR 58 256 -6 23 68 0 0 chr6 104957412 104957456 -77457786 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr6 104958227 104958252 -77456990 + (A)n Simple_repeat Simple_repeat 1 25 0 331 357 49 31 chr6 104959989 104960213 -77455029 - MIR SINE MIR -34 228 1 1984 159 152 22 chr6 104960261 104960708 -77454534 + MLT1D LTR MaLR 1 505 0 205 379 38 3 chr6 104961394 104961554 -77453688 + MIR SINE MIR 53 216 -46 192 125 0 0 chr6 104961637 104961669 -77453573 + (CA)n Simple_repeat Simple_repeat 1 32 0 2303 42 42 3 chr6 104962125 104962411 -77452831 + AluY SINE Alu 1 297 -14 340 191 29 29 chr6 104962451 104962556 -77452686 + Charlie7 DNA MER1_type 2459 2563 -49 358 375 62 12 chr6 104962743 104962903 -77452339 - MIR SINE MIR -79 183 16 2077 157 13 13 chr6 104962958 104963333 -77451909 + THE1C LTR MaLR 1 375 0 9824 106 65 4 chr6 104963335 104964823 -77450419 + THE1C-int LTR MaLR 3 1580 0 2034 130 52 22 chr6 104964825 104965187 -77450055 + THE1C LTR MaLR 3 375 0 303 298 173 22 chr6 104965800 104966072 -77449170 + MLT1J2 LTR MaLR 59 371 -79 1723 107 0 52 chr6 104966446 104966716 -77448526 + AluSx SINE Alu 42 297 -15 393 313 58 8 chr6 104966792 104967035 -77448207 + L1M4 LINE L1 2329 2583 -3563 1209 248 115 8 chr6 104967351 104967742 -77447500 - LTR16A LTR ERVL -2 448 16 1219 83 0 0 chr6 104967887 104968044 -77447198 - AluSc SINE Alu -18 291 135 2291 95 17 0 chr6 104968047 104968341 -77446901 - AluSg SINE Alu -11 299 1 826 263 81 17 chr6 104968776 104969073 -77446169 + L2 LINE L2 1914 2229 -1085 1967 209 21 45 chr6 104969112 104969269 -77445973 - MLT2B1 LTR ERVL 0 520 361 776 154 14 0 chr6 104969269 104969412 -77445830 - L1PA16 LINE L1 -2 6164 6020 1967 209 21 45 chr6 104969412 104969785 -77445457 - MLT2B1 LTR ERVL -159 361 3 2169 262 109 10 chr6 104969789 104970539 -77444703 + L2 LINE L2 2225 3044 -269 2466 87 0 0 chr6 104970571 104970870 -77444372 - AluSq SINE Alu -14 299 1 2183 142 24 21 chr6 104970897 104971271 -77443971 - THE1C LTR MaLR 0 375 1 262 206 15 15 chr6 104972901 104972969 -77442273 - MIR SINE MIR 0 262 195 728 266 42 8 chr6 104973788 104974028 -77441214 + MIR SINE MIR 13 262 0 32 57 0 0 chr6 104974157 104974210 -77441032 + AT_rich Low_complexity Low_complexity 1 53 0 831 113 0 0 chr6 104974379 104974485 -77440757 + FRAM SINE Alu 54 159 -17 2352 101 0 0 chr6 104974982 104975289 -77439953 + AluSg SINE Alu 1 307 -3 247 264 110 26 chr6 104975355 104975510 -77439732 - MER117 DNA MER1_type -28 169 2 355 344 108 19 chr6 104975969 104976181 -77439061 + L3 LINE CR1 1232 1462 -115 557 236 153 13 chr6 104976224 104976381 -77438861 - MER5A DNA MER1_type -2 187 9 285 274 151 0 chr6 104979008 104979114 -77436128 - L2 LINE L2 0 3313 3192 1837 163 0 7 chr6 104979442 104979737 -77435505 - AluJo SINE Alu -18 294 2 488 274 82 0 chr6 104980050 104980196 -77435046 - MIR SINE MIR -21 241 84 270 315 54 8 chr6 104980579 104980709 -77434533 - L3b LINE CR1 -120 1463 1328 217 205 26 0 chr6 104981170 104981209 -77434033 - L2 LINE L2 -13 3259 3220 764 183 0 0 chr6 104981219 104981350 -77433892 + Tigger1 DNA MER2_type 2272 2402 -16 6040 155 27 14 chr6 104981354 104983145 -77432097 - L1MA9 LINE L1 -386 6947 5123 2759 261 42 43 chr6 104983152 104984665 -77430577 - L1MA9 LINE L1 -4083 3084 1865 308 309 65 7 chr6 104984866 104985005 -77430237 - L1MA9 LINE L1 -6712 456 310 23 68 0 0 chr6 104985164 104985208 -77430034 + AT_rich Low_complexity Low_complexity 1 44 0 31 68 0 0 chr6 104985225 104985284 -77429958 + AT_rich Low_complexity Low_complexity 1 59 0 5043 159 26 33 chr6 104985522 104986786 -77428456 + L1MA4 LINE L1 4377 5647 -653 216 86 0 0 chr6 104986786 104986821 -77428421 + (TA)n Simple_repeat Simple_repeat 2 36 0 5043 159 26 33 chr6 104986821 104986901 -77428341 + L1MA4 LINE L1 5647 5726 -574 2318 97 3 25 chr6 104986901 104987220 -77428022 + AluSx SINE Alu 1 312 0 5043 159 26 33 chr6 104987220 104987640 -77427602 + L1MA4 LINE L1 5726 6128 -172 2283 95 0 0 chr6 104987640 104987961 -77427281 + AluSg SINE Alu 1 321 0 5043 159 26 33 chr6 104987961 104988126 -77427116 + L1MA4 LINE L1 6128 6293 -7 21 0 0 0 chr6 104988126 104988147 -77427095 + AT_rich Low_complexity Low_complexity 1 21 0 899 204 16 5 chr6 104988558 104988744 -77426498 - MER5A DNA MER1_type -1 188 1 2140 121 15 64 chr6 104988762 104989152 -77426090 + THE1C LTR MaLR 5 375 0 184 253 81 103 chr6 104990359 104990533 -77424709 - L2 LINE L2 -90 3223 3054 5564 148 20 20 chr6 104990593 104990900 -77424342 - L1MA7 LINE L1 0 6291 5985 2507 164 19 0 chr6 104990900 104991322 -77423920 + MSTB1 LTR MaLR 1 430 -2 5564 148 20 20 chr6 104991322 104992017 -77423225 - L1MA7 LINE L1 -305 5986 5289 358 140 0 0 chr6 104992015 104992072 -77423170 - L1MA7 LINE L1 -1424 4722 4666 * 4940 174 12 24 chr6 104992081 104993101 -77422141 - L1MA7 LINE L1 -1984 4162 3155 183 205 0 0 chr6 104993811 104993850 -77421392 + (TG)n Simple_repeat Simple_repeat 2 40 0 233 310 102 31 chr6 104994248 104994464 -77420778 - MIR SINE MIR -8 254 28 217 211 0 0 chr6 104996107 104996145 -77419097 - MIR SINE MIR -28 234 197 3154 154 30 6 chr6 104997164 104997689 -77417553 - MER44D DNA MER2_type -7 598 6 1201 185 63 24 chr6 104998347 104998722 -77416520 - LTR52 LTR ERVL -10 411 1 2182 106 0 0 chr6 104998821 104999132 -77416110 + AluSq SINE Alu 1 311 0 2150 252 58 39 chr6 105000077 105000838 -77414404 - MER20B DNA MER1_type -2 781 7 21 0 0 0 chr6 105000845 105000866 -77414376 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr6 105001184 105001213 -77414029 + (CA)n Simple_repeat Simple_repeat 2 30 0 26 64 0 0 chr6 105001608 105001655 -77413587 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr6 105001858 105001888 -77413354 + AT_rich Low_complexity Low_complexity 1 30 0 375 256 13 0 chr6 105002442 105002520 -77412722 - L2 LINE L2 0 3272 3194 841 172 0 0 chr6 105002912 105003046 -77412196 + AluSg/x SINE Alu 156 289 -23 893 301 114 73 chr6 105003151 105003617 -77411625 + L2 LINE L2 1204 1649 -1665 1984 170 0 0 chr6 105003617 105003923 -77411319 + AluSx SINE Alu 2 307 -5 893 301 114 73 chr6 105003923 105004194 -77411048 + L2 LINE L2 1649 1907 -1407 2591 58 0 0 chr6 105004194 105004505 -77410737 - AluY SINE Alu 0 311 1 893 301 114 73 chr6 105004505 105004758 -77410484 + L2 LINE L2 1907 2236 -1078 938 194 20 107 chr6 105004779 105004858 -77410384 - MER58B DNA MER1_type -2079 341 257 704 179 0 0 chr6 105004858 105004975 -77410267 + FLAM_C SINE Alu 2 118 -15 938 194 20 107 chr6 105004975 105005194 -77410048 - MER58B DNA MER1_type -2163 257 69 2702 29 3 0 chr6 105005273 105005582 -77409660 - AluY SINE Alu -1 310 1 3304 224 22 38 chr6 105005582 105006538 -77408704 - L1M4 LINE L1 -750 5396 4456 572 279 67 89 chr6 105006575 105006933 -77408309 + MLT1J LTR MaLR 15 364 -147 462 331 35 0 chr6 105007036 105007205 -77408037 - MIR SINE MIR -69 193 19 734 255 119 35 chr6 105010773 105011059 -77404183 - L2 LINE L2 -22 3291 2982 1105 307 23 39 chr6 105011105 105011538 -77403704 - L2 LINE L2 -512 2802 2377 692 230 50 6 chr6 105011738 105011899 -77403343 - MER5A DNA MER1_type -21 168 1 442 278 35 35 chr6 105011899 105012066 -77403176 - L2 LINE L2 -2028 1286 1120 194 305 12 12 chr6 105013890 105013972 -77401270 - MIR SINE MIR -38 224 143 25 0 0 0 chr6 105014969 105014994 -77400248 + AT_rich Low_complexity Low_complexity 1 25 0 294 73 0 0 chr6 105016103 105016144 -77399098 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 105017819 105017840 -77397402 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr6 105018036 105018065 -77397177 + AT_rich Low_complexity Low_complexity 1 29 0 290 305 224 28 chr6 105019248 105019962 -77395280 + L2 LINE L2 1793 2646 -668 266 376 31 9 chr6 105020212 105020438 -77394804 + L2 LINE L2 2437 2667 -647 582 212 22 73 chr6 105020993 105021172 -77394070 + MIR SINE MIR 79 248 -14 21 0 0 0 chr6 105021503 105021524 -77393718 + AT_rich Low_complexity Low_complexity 1 21 0 766 206 51 6 chr6 105022255 105022430 -77392812 - MER5A DNA MER1_type -1 188 6 30 45 0 0 chr6 105022956 105023000 -77392242 + AT_rich Low_complexity Low_complexity 1 44 0 280 252 34 25 chr6 105023375 105023494 -77391748 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 247 338 144 6 chr6 105024450 105024610 -77390632 - MIR SINE MIR 0 262 81 52 41 0 0 chr6 105024923 105024996 -77390246 + AT_rich Low_complexity Low_complexity 1 73 0 336 290 169 32 chr6 105028500 105028624 -77386618 - L2 LINE L2 0 3272 3132 586 224 88 91 chr6 105028746 105029009 -77386233 - L2 LINE L2 -1 3312 3051 2418 198 54 11 chr6 105029103 105029638 -77385604 - MER74A LTR ERVL 0 558 1 238 254 42 14 chr6 105029674 105029745 -77385497 + L2 LINE L2 2998 3070 -202 263 312 140 73 chr6 105030107 105030434 -77384808 - L2 LINE L2 -582 2732 2360 2445 77 0 3 chr6 105030434 105030746 -77384496 + AluY SINE Alu 1 311 0 263 312 140 73 chr6 105030746 105030911 -77384331 - L2 LINE L2 -954 2360 2207 335 306 93 42 chr6 105031105 105031212 -77384030 - MIR SINE MIR -16 246 146 2348 101 0 0 chr6 105031212 105031508 -77383734 + AluSg SINE Alu 1 296 -14 335 306 93 42 chr6 105031508 105031616 -77383626 - MIR SINE MIR -116 146 20 434 203 87 7 chr6 105031720 105031858 -77383384 + L1ME4a LINE L1 5968 6116 -5 184 323 192 0 chr6 105034602 105034732 -77380510 - MIR SINE MIR -107 155 1 503 160 20 10 chr6 105036625 105036725 -77378517 + L1MA9 LINE L1 5981 6081 -231 569 155 0 0 chr6 105036732 105036835 -77378407 + L1MA9 LINE L1 6186 6288 -24 21 0 0 0 chr6 105036835 105036856 -77378386 + AT_rich Low_complexity Low_complexity 1 21 0 227 318 30 0 chr6 105037381 105037447 -77377795 - L2 LINE L2 -12 3260 3193 1896 145 10 14 chr6 105037604 105037901 -77377341 + AluSx SINE Alu 6 301 -11 1653 173 55 3 chr6 105039044 105039333 -77375909 + AluJb SINE Alu 1 304 -8 210 185 37 56 chr6 105039478 105039532 -77375710 - L2 LINE L2 -1 3271 3219 183 317 37 0 chr6 105039537 105039619 -77375623 - L2 LINE L2 -32 3281 3197 2271 97 10 6 chr6 105040080 105040391 -77374851 - AluSq SINE Alu -1 312 1 221 346 0 45 chr6 105041399 105041532 -77373710 - MIR SINE MIR -44 218 92 1501 128 15 0 chr6 105048045 105048248 -77366994 + AluSg/x SINE Alu 83 288 -24 25 0 0 0 chr6 105048251 105048276 -77366966 + AT_rich Low_complexity Low_complexity 1 25 0 1757 167 6 41 chr6 105048897 105049215 -77366027 - AluJo SINE Alu -5 307 1 243 61 0 0 chr6 105049716 105049749 -77365493 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 215 246 159 0 chr6 105050109 105050178 -77365064 - MIR SINE MIR -34 228 149 282 275 8 15 chr6 105050938 105050950 -77364292 + (TA)n Simple_repeat Simple_repeat 1 12 -118 1093 93 19 12 chr6 105050950 105051112 -77364130 - L1PA14 LINE L1 -8 6153 5991 282 275 8 15 chr6 105051112 105051230 -77364012 + (TA)n Simple_repeat Simple_repeat 12 130 0 2240 91 0 0 chr6 105051315 105051600 -77363642 - AluY SINE Alu -7 304 20 2095 138 3 3 chr6 105054566 105054862 -77360380 + AluSx SINE Alu 1 296 -16 2404 61 3 3 chr6 105055116 105055412 -77359830 + AluY SINE Alu 1 296 -15 392 338 35 7 chr6 105055525 105055667 -77359575 + MIR3 SINE MIR 54 199 -9 186 246 58 72 chr6 105055973 105056042 -77359200 - L2 LINE L2 -1 3312 3245 339 197 29 13 chr6 105057148 105057247 -77357995 + MER5A DNA MER1_type 6 105 -84 1169 233 78 47 chr6 105058976 105059363 -77355879 - LTR1B-int LTR ERV1 -6513 578 180 1554 213 114 71 chr6 105059545 105060301 -77354941 - LTR1B LTR ERV1 -39 981 1 2251 108 0 0 chr6 105060555 105060850 -77354392 - AluSg SINE Alu -15 295 1 26 0 0 0 chr6 105060856 105060882 -77354360 + AT_rich Low_complexity Low_complexity 1 26 0 61 27 0 0 chr6 105060943 105061018 -77354224 + AT_rich Low_complexity Low_complexity 1 75 0 1832 164 0 3 chr6 105063135 105063421 -77351821 - AluJb SINE Alu -27 285 1 303 227 11 0 chr6 105063576 105063664 -77351578 - L1MC5 LINE L1 -66 7895 7807 185 307 117 15 chr6 105064004 105064141 -77351101 - L3b LINE CR1 -148 1435 1285 21 0 0 0 chr6 105064680 105064701 -77350541 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr6 105066344 105066392 -77348850 + AT_rich Low_complexity Low_complexity 1 48 0 2474 78 0 0 chr6 105066446 105066754 -77348488 + AluSq SINE Alu 1 308 -5 209 209 0 0 chr6 105067974 105068017 -77347225 + GA-rich Low_complexity Low_complexity 4 46 0 185 323 48 0 chr6 105068206 105068268 -77346974 - L2 LINE L2 -26 3246 3182 397 317 35 7 chr6 105069239 105069381 -77345861 - MIR SINE MIR -113 149 4 183 42 0 0 chr6 105069750 105069774 -77345468 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 285 247 38 95 chr6 105070863 105070993 -77344249 - MIR SINE MIR -67 141 51 598 226 65 35 chr6 105073517 105073716 -77341526 - MER67D LTR ERV1 0 514 310 279 145 0 48 chr6 105073756 105073818 -77341424 - MER67D LTR ERV1 -195 319 261 644 132 0 0 chr6 105073818 105073909 -77341333 + AluSp/q SINE Alu 205 295 -18 1244 154 14 79 chr6 105073916 105074196 -77341046 - MER67D LTR ERV1 -252 262 1 1455 131 43 61 chr6 105074723 105075052 -77340190 + MER33 DNA MER1_type 2 324 0 2202 94 0 3 chr6 105077720 105078034 -77337208 + AluSx SINE Alu 1 313 0 1005 214 131 0 chr6 105078277 105078506 -77336736 - MIR SINE MIR -3 259 1 418 284 201 8 chr6 105081610 105081849 -77333393 - L1M4 LINE L1 -2633 3513 3229 556 260 81 35 chr6 105081986 105082271 -77332971 + L1M4 LINE L1 2685 2982 -3164 306 265 55 90 chr6 105083038 105083238 -77332004 + MARNA DNA Mariner 273 465 -121 2072 100 33 7 chr6 105083420 105083720 -77331522 - AluSg SINE Alu 0 310 3 528 279 66 0 chr6 105085074 105085210 -77330032 + MIR SINE MIR 47 191 -71 2155 92 7 0 chr6 105085664 105085956 -77329286 - AluY SINE Alu -17 294 1 1766 168 30 0 chr6 105086379 105086682 -77328560 + AluJo SINE Alu 1 312 0 228 200 282 0 chr6 105086799 105086884 -77328358 - MIR SINE MIR -28 234 126 390 178 141 135 chr6 105086908 105087093 -77328149 + MIR SINE MIR 67 252 -10 267 309 29 58 chr6 105087961 105088100 -77327142 + MIR SINE MIR 52 186 -76 25 31 0 0 chr6 105090288 105090320 -77324922 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr6 105090849 105090877 -77324365 + AT_rich Low_complexity Low_complexity 1 28 0 2226 39 29 55 chr6 105091936 105092245 -77322997 + AluY SINE Alu 11 311 0 1125 173 107 5 chr6 105092383 105092580 -77322662 + MER8 DNA MER2_type 23 239 0 414 69 0 0 chr6 105093141 105093199 -77322043 + (CA)n Simple_repeat Simple_repeat 1 58 0 371 322 94 0 chr6 105093762 105093911 -77321331 - MIR SINE MIR -56 206 44 231 88 0 0 chr6 105095089 105095123 -77320119 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 6722 130 39 15 chr6 105096128 105097329 -77317913 + Tigger3b DNA MER2_type 2 1231 0 539 300 124 23 chr6 105097473 105097820 -77317422 + MARNA DNA Mariner 194 575 -11 21 71 0 0 chr6 105097889 105097931 -77317311 + AT_rich Low_complexity Low_complexity 1 42 0 1962 175 0 20 chr6 105099283 105099638 -77315604 + MER7A DNA MER2_type 1 346 0 21 0 0 0 chr6 105100927 105100948 -77314294 + AT_rich Low_complexity Low_complexity 1 21 0 1782 143 10 29 chr6 105100953 105101260 -77313982 - AluJo SINE Alu -11 301 1 3974 203 42 20 chr6 105101267 105101483 -77313759 - L1MB7 LINE L1 0 6184 5974 2221 110 3 0 chr6 105101483 105101783 -77313459 - AluSx SINE Alu -6 306 6 3974 203 42 20 chr6 105101783 105103081 -77312161 - L1MB7 LINE L1 -210 5974 4646 713 265 28 19 chr6 105103098 105103415 -77311827 - L1M4b LINE L1 -3803 3154 2874 22752 77 16 10 chr6 105103430 105107423 -77307819 - L1PA7 LINE L1 -3 6545 2530 288 279 92 55 chr6 105107411 105107683 -77307559 - L1M4b LINE L1 -4292 2846 2565 * 1572 157 128 3 chr6 105107714 105108033 -77307209 + MER46B DNA MER2_type 2 235 -1 198 0 0 0 chr6 105108061 105108083 -77307159 + (T)n Simple_repeat Simple_repeat 1 22 0 2308 255 108 32 chr6 105108276 105109575 -77305667 - L1M4b LINE L1 -4543 2416 919 314 136 0 0 chr6 105109576 105109620 -77305622 - Alu SINE Alu -259 44 1 312 292 0 0 chr6 105110910 105110982 -77304260 + L2 LINE L2 3201 3272 0 265 261 92 15 chr6 105111217 105111282 -77303960 + L2 LINE L2 3216 3285 -28 194 319 62 31 chr6 105111262 105111422 -77303820 - L2 LINE L2 -12 3301 3137 * 1940 145 0 7 chr6 105112742 105113038 -77302204 - AluSx SINE Alu -18 294 1 439 296 59 0 chr6 105114064 105114233 -77301009 - MIR SINE MIR -3 259 81 381 320 153 47 chr6 105115145 105115766 -77299476 + L2 LINE L2 2155 2841 -473 1345 179 0 4 chr6 105116607 105116842 -77298400 + MER46A DNA MER2_type 3 236 0 1365 135 17 17 chr6 105118108 105118345 -77296897 + Tigger7 DNA MER2_type 2255 2491 0 26 74 0 0 chr6 105118601 105118655 -77296587 + AT_rich Low_complexity Low_complexity 1 54 0 1756 193 3 0 chr6 105118840 105119151 -77296091 + AluSx SINE Alu 1 312 0 2333 86 10 0 chr6 105122086 105122389 -77292853 + AluSc SINE Alu 1 306 -3 5767 174 72 16 chr6 105123120 105124330 -77290912 - Charlie1 DNA MER1_type -5 2756 1479 2594 194 81 4 chr6 105124534 105125056 -77290186 + MER68 LTR ERV1 1 562 0 25 0 0 0 chr6 105126039 105126064 -77289178 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr6 105126919 105126947 -77288295 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 105128160 105128183 -77287059 + AT_rich Low_complexity Low_complexity 1 23 0 2421 79 0 0 chr6 105128209 105128513 -77286729 - AluY SINE Alu -7 304 1 7297 260 109 22 chr6 105130784 105133457 -77281785 + L2 LINE L2 387 3312 -1 27 29 0 0 chr6 105133869 105133903 -77281339 + AT_rich Low_complexity Low_complexity 1 34 0 495 254 105 48 chr6 105136506 105136734 -77278508 - MIR SINE MIR -10 252 12 1782 131 8 8 chr6 105136830 105137089 -77278153 + AluSx SINE Alu 28 286 -26 36 0 0 0 chr6 105137089 105137125 -77278117 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 26 chr6 105137386 105137402 -77277840 + AT_rich Low_complexity Low_complexity 1 16 -21 1981 133 33 3 chr6 105137402 105137702 -77277540 + AluSx SINE Alu 1 309 -3 27 0 0 26 chr6 105137702 105137723 -77277519 + AT_rich Low_complexity Low_complexity 16 37 0 21 0 0 0 chr6 105138005 105138026 -77277216 + AT_rich Low_complexity Low_complexity 1 21 0 481 279 162 5 chr6 105138695 105138892 -77276350 - MIR SINE MIR -3 259 32 216 357 21 36 chr6 105138875 105139015 -77276227 + MIR SINE MIR 79 216 -46 * 426 85 0 0 chr6 105140284 105140343 -77274899 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 199 203 95 68 chr6 105140523 105140597 -77274645 + MIR SINE MIR 113 188 -74 826 243 105 5 chr6 105140901 105141111 -77274131 - MIR SINE MIR -30 232 2 2416 46 0 3 chr6 105141859 105142176 -77273066 - AluY SINE Alu 0 316 1 2092 116 0 0 chr6 105142179 105142471 -77272771 - AluSc SINE Alu -17 292 1 277 188 248 10 chr6 105142545 105142646 -77272596 + MIR SINE MIR 124 248 -14 1032 288 87 23 chr6 105143014 105143550 -77271692 - L2 LINE L2 -51 3262 2695 236 374 28 39 chr6 105143787 105143969 -77271273 - L2 LINE L2 -541 2773 2594 204 228 11 54 chr6 105144929 105145021 -77270221 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 1383 227 123 101 chr6 105146085 105146639 -77268603 + MLT1G LTR MaLR 5 570 -20 21 0 0 0 chr6 105147412 105147433 -77267809 + AT_rich Low_complexity Low_complexity 1 21 0 291 294 176 8 chr6 105150694 105150813 -77264429 - MIR SINE MIR -93 169 31 24 0 0 0 chr6 105151410 105151434 -77263808 + AT_rich Low_complexity Low_complexity 1 24 0 410 145 0 0 chr6 105152625 105152687 -77262555 + AluJ/FLAM SINE Alu 1 62 -250 213 352 139 0 chr6 105203225 105203333 -77211909 + L3b LINE CR1 1438 1560 -23 1791 188 3 3 chr6 105204750 105205043 -77210199 - AluJo SINE Alu -19 293 1 411 310 141 33 chr6 105205512 105205696 -77209546 - MIR SINE MIR -44 218 15 801 310 190 31 chr6 105206190 105207131 -77208111 + L2 LINE L2 1781 2871 -443 1062 295 87 38 chr6 105207485 105208318 -77206924 + L1MEc LINE L1 37 925 -5471 2259 103 0 0 chr6 105208318 105208608 -77206634 + AluSc SINE Alu 1 290 -19 1062 295 87 38 chr6 105208608 105208740 -77206502 + L1MEc LINE L1 925 1049 -5347 1700 182 6 28 chr6 105208794 105209112 -77206130 + AluJb SINE Alu 1 311 -1 203 363 106 55 chr6 105209764 105210056 -77205186 + L2 LINE L2 2948 3254 -18 963 243 62 77 chr6 105210127 105210206 -77205036 + MER90 LTR ERV1 70 149 -465 2204 95 0 3 chr6 105210206 105210518 -77204724 + AluSg SINE Alu 3 313 0 963 243 62 77 chr6 105210518 105210985 -77204257 + MER90 LTR ERV1 149 609 -5 2099 125 7 0 chr6 105211201 105211498 -77203744 + AluSq SINE Alu 9 307 -6 2354 75 0 3 chr6 105212273 105212568 -77202674 + AluY SINE Alu 1 294 -17 2027 114 3 7 chr6 105212578 105212875 -77202367 + AluSx SINE Alu 5 300 -12 2080 85 66 0 chr6 105213413 105213685 -77201557 - AluSg SINE Alu -20 290 1 427 261 86 27 chr6 105213695 105213917 -77201325 + L1MC5 LINE L1 7691 7925 -36 390 280 75 14 chr6 105214711 105214925 -77200317 - MARNA DNA Mariner -212 374 148 5201 260 89 45 chr6 105216696 105217585 -77197657 + L1M4 LINE L1 2558 3406 -2740 369 0 0 0 chr6 105217585 105217626 -77197616 + (CA)n Simple_repeat Simple_repeat 1 41 0 5201 260 89 45 chr6 105217626 105217668 -77197574 + L1M4 LINE L1 3406 3445 -2701 1566 163 0 36 chr6 105217668 105217945 -77197297 + AluJb SINE Alu 37 303 -9 5201 260 89 45 chr6 105217945 105218186 -77197056 + L1M4 LINE L1 3445 3674 -2472 2061 108 42 0 chr6 105218186 105218474 -77196768 + AluSx SINE Alu 1 300 -12 5201 260 89 45 chr6 105218474 105219679 -77195563 + L1M4 LINE L1 3674 5042 -1104 1368 318 100 22 chr6 105219708 105220571 -77194671 - L2 LINE L2 -1225 2089 1160 2245 124 0 0 chr6 105220588 105220894 -77194348 + AluSx SINE Alu 1 306 -6 214 240 40 0 chr6 105220993 105221043 -77194199 - L3 LINE CR1 -1285 292 241 206 317 102 30 chr6 105221086 105221253 -77193989 - L3b LINE CR1 -139 1444 1266 984 262 67 69 chr6 105221898 105222318 -77192924 + MLT1E LTR MaLR 1 419 -174 1458 233 55 79 chr6 105222389 105222948 -77192294 + MER77 LTR ERV1 53 598 -7 431 217 44 139 chr6 105223059 105223239 -77192003 + MLT1E LTR MaLR 431 593 0 1266 204 0 28 chr6 105223272 105223527 -77191715 + AluJo SINE Alu 61 308 -4 1918 145 3 3 chr6 105223531 105223813 -77191429 + AluSx SINE Alu 3 284 -28 734 175 0 70 chr6 105223990 105224133 -77191109 - FLAM_A SINE Alu 0 133 1 406 238 0 38 chr6 105224139 105224244 -77190998 - L1MC2 LINE L1 -37 6307 6207 1843 70 62 8 chr6 105224312 105224555 -77190687 - AluY SINE Alu -55 256 1 253 293 24 12 chr6 105224565 105224647 -77190595 + L2 LINE L2 3231 3313 0 387 0 0 0 chr6 105224877 105224920 -77190322 + (TG)n Simple_repeat Simple_repeat 2 44 0 441 387 39 17 chr6 105225358 105225708 -77189534 + L2 LINE L2 2702 3070 -243 1041 252 89 40 chr6 105225734 105226139 -77189103 - MLT1J LTR MaLR -23 488 64 183 412 0 29 chr6 105226177 105226279 -77188963 + L2 LINE L2 2971 3069 -244 290 298 44 0 chr6 105226338 105226452 -77188790 - MLT1J LTR MaLR -17 494 376 843 200 74 56 chr6 105226487 105226702 -77188540 + MER58A DNA MER1_type 6 224 0 1086 279 38 15 chr6 105227036 105227513 -77187729 - L1MDb LINE L1 -4988 1555 1068 360 282 103 6 chr6 105227765 105227939 -77187303 - L1MDb LINE L1 -5611 919 729 204 40 0 0 chr6 105228029 105228054 -77187188 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 318 297 59 79 chr6 105228269 105228572 -77186670 - L1MDb LINE L1 -6210 330 34 1640 187 0 23 chr6 105229325 105229630 -77185612 + AluJo SINE Alu 3 300 -12 2367 117 32 46 chr6 105229811 105229885 -77185357 - THE1B LTR MaLR 0 364 291 2273 113 0 3 chr6 105229885 105230196 -77185046 + AluSx SINE Alu 1 310 -2 2367 117 32 46 chr6 105230196 105230490 -77184752 - THE1B LTR MaLR -73 291 1 2325 126 113 38 chr6 105230884 105231124 -77184118 - MSTA LTR MaLR 0 428 208 1863 128 0 18 chr6 105231124 105231405 -77183837 + AluSx SINE Alu 1 276 -36 345 93 0 0 chr6 105231407 105231461 -77183781 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 2325 126 113 38 chr6 105231461 105231615 -77183627 - MSTA LTR MaLR -220 208 1 1547 240 71 162 chr6 105231643 105232964 -77182278 - L2 LINE L2 0 3313 1874 1909 164 0 23 chr6 105232964 105233269 -77181973 + AluJo SINE Alu 1 298 -14 1547 240 71 162 chr6 105233269 105233341 -77181901 - L2 LINE L2 -1439 1874 2041 1673 196 0 0 chr6 105233341 105233627 -77181615 + AluJo SINE Alu 1 286 -26 1547 240 71 162 chr6 105233627 105233891 -77181351 - L2 LINE L2 -1271 2042 1756 489 268 132 16 chr6 105234294 105234484 -77180758 + MIR SINE MIR 17 228 -34 384 243 112 47 chr6 105234834 105235048 -77180194 - MLT1H1 LTR MaLR -6 536 309 408 88 0 0 chr6 105235100 105235157 -77180085 + (TC)n Simple_repeat Simple_repeat 2 58 0 647 219 115 39 chr6 105235177 105235440 -77179802 - MLT1H1 LTR MaLR -298 257 13 3621 139 151 97 chr6 105235555 105235879 -77179363 - L1MC3 LINE L1 -1 7784 7479 2005 85 55 24 chr6 105235879 105236172 -77179070 - AluSc SINE Alu -7 302 1 1772 176 21 0 chr6 105236175 105236465 -77178777 - AluJb SINE Alu -16 296 1 3621 139 151 97 chr6 105236465 105236702 -77178540 - L1MC3 LINE L1 -307 7478 7255 245 250 33 0 chr6 105236702 105236762 -77178480 - MLT1F1 LTR MaLR -465 102 41 3621 139 151 97 chr6 105236762 105237126 -77178116 - L1MC3 LINE L1 -530 7255 6742 780 233 0 7 chr6 105237135 105237281 -77177961 - MER20 DNA MER1_type -74 145 1 232 298 64 92 chr6 105237286 105237427 -77177815 - L2 LINE L2 -128 3144 3008 403 265 116 20 chr6 105237442 105237589 -77177653 - MIR SINE MIR -14 248 88 292 344 82 0 chr6 105237736 105237858 -77177384 + L2 LINE L2 3141 3272 0 249 108 0 0 chr6 105238212 105238249 -77176993 + (TA)n Simple_repeat Simple_repeat 1 37 0 27 0 0 0 chr6 105238367 105238394 -77176848 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr6 105241308 105241335 -77173907 + AT_rich Low_complexity Low_complexity 1 27 0 231 273 36 0 chr6 105241340 105241395 -77173847 + MIR SINE MIR 21 77 -131 21 36 0 0 chr6 105241601 105241629 -77173613 + AT_rich Low_complexity Low_complexity 1 28 0 1727 135 10 83 chr6 105241964 105242276 -77172966 + AluSx SINE Alu 1 289 -23 281 216 49 88 chr6 105242382 105242429 -77172813 - MIR SINE MIR -114 148 101 2500 66 0 7 chr6 105242429 105242733 -77172509 + AluY SINE Alu 1 302 -9 281 216 49 88 chr6 105242733 105242787 -77172455 - MIR SINE MIR -161 101 51 187 244 24 0 chr6 105242962 105243003 -77172239 + MER5A DNA MER1_type 15 56 -133 464 242 188 7 chr6 105243012 105243161 -77172081 - MER5A DNA MER1_type -3 186 11 190 283 79 72 chr6 105243454 105243606 -77171636 - MER5B DNA MER1_type -24 154 2 277 402 59 16 chr6 105243931 105244185 -77171057 - L2 LINE L2 -454 2860 2596 2380 91 7 0 chr6 105244713 105245022 -77170220 + AluSx SINE Alu 1 311 -1 1737 191 158 14 chr6 105245278 105245335 -77169907 + MLT1D LTR MaLR 21 68 -437 3251 160 22 22 chr6 105245335 105245884 -77169358 + MER44D DNA MER2_type 1 604 -1 1737 191 158 14 chr6 105245884 105246250 -77168992 + MLT1D LTR MaLR 68 505 0 22 0 0 0 chr6 105246706 105246728 -77168514 + AT_rich Low_complexity Low_complexity 1 22 0 1939 259 65 35 chr6 105247310 105247915 -77167327 - MLT1E2 LTR MaLR -3 623 1 2126 139 0 0 chr6 105247985 105248287 -77166955 - AluSx SINE Alu -10 302 1 213 65 0 0 chr6 105248877 105248908 -77166334 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2226 67 0 14 chr6 105248910 105249194 -77166048 - AluY SINE Alu -31 280 1 2352 94 0 3 chr6 105249271 105249570 -77165672 - AluSg SINE Alu -12 298 1 435 291 189 0 chr6 105250569 105250744 -77164498 + L3 LINE CR1 1355 1562 -15 2277 100 0 0 chr6 105252431 105252748 -77162494 - AluSg SINE Alu 0 310 1 203 340 31 21 chr6 105252756 105252853 -77162389 - MIR SINE MIR -74 188 91 753 231 47 0 chr6 105253207 105253376 -77161866 - MIR SINE MIR -1 261 85 183 80 0 0 chr6 105253787 105253812 -77161430 + (T)n Simple_repeat Simple_repeat 1 25 0 2150 126 7 0 chr6 105254173 105254466 -77160776 - AluSq SINE Alu -15 298 4 1344 133 86 73 chr6 105254468 105254770 -77160472 - AluJb SINE Alu -6 306 1 838 185 79 17 chr6 105254796 105254974 -77160268 + MER5A DNA MER1_type 1 189 0 208 216 0 0 chr6 105255192 105255229 -77160013 + polypyrimidine Low_complexity Low_complexity 3 39 0 455 353 34 5 chr6 105255843 105256047 -77159195 + LTR16C LTR ERVL 250 459 -32 243 298 48 12 chr6 105256639 105256723 -77158519 - MER5B DNA MER1_type -23 155 69 913 227 77 0 chr6 105256724 105256918 -77158324 - MER63A DNA MER1_type 0 210 2 253 355 62 12 chr6 105257720 105257902 -77157340 + MIR SINE MIR 30 218 -44 446 258 25 37 chr6 105258189 105258352 -77156890 - MIR SINE MIR -100 162 2 299 267 150 35 chr6 105258719 105258869 -77156373 - MIR SINE MIR -62 146 20 24 53 0 0 chr6 105259148 105259186 -77156056 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 9 0 chr6 105259759 105259821 -77155421 + AT_rich Low_complexity Low_complexity 1 23 0 1112 155 0 32 chr6 105259894 105260081 -77155161 - AluJb SINE Alu 0 312 132 199 280 40 0 chr6 105260252 105260302 -77154940 - L2 LINE L2 -10 3303 3252 2849 76 31 6 chr6 105260302 105260657 -77154585 + THE1B LTR MaLR 1 364 0 9897 108 37 74 chr6 105260657 105261214 -77154028 + THE1B-int LTR MaLR 1 577 -1003 2421 102 0 0 chr6 105261214 105261517 -77153725 + AluSc SINE Alu 1 303 -6 9897 108 37 74 chr6 105261517 105262415 -77152827 + THE1B-int LTR MaLR 577 1391 -189 2339 87 3 3 chr6 105262415 105262713 -77152529 - AluY SINE Alu -13 298 1 9897 108 37 74 chr6 105262713 105262897 -77152345 + THE1B-int LTR MaLR 1391 1580 0 2363 120 33 38 chr6 105262897 105263263 -77151979 + THE1B LTR MaLR 1 364 0 2397 84 0 16 chr6 105263304 105263615 -77151627 - AluY SINE Alu -5 306 1 727 123 8 23 chr6 105263875 105264005 -77151237 - L1PB4 LINE L1 -292 5864 5737 1024 287 42 26 chr6 105264010 105264390 -77150852 - L1MC4a LINE L1 -1921 5887 5502 235 302 164 2 chr6 105264511 105264654 -77150588 - MIR3 SINE MIR -75 133 10 308 200 0 0 chr6 105264843 105264903 -77150339 + L1MA6 LINE L1 6236 6295 -5 2378 73 0 0 chr6 105264914 105265214 -77150028 + AluSg SINE Alu 1 300 -10 807 79 0 0 chr6 105265628 105265729 -77149513 - AluS SINE Alu -212 101 1 647 167 19 19 chr6 105265754 105265862 -77149380 + FLAM_A SINE Alu 1 108 -34 2032 57 4 0 chr6 105267336 105267580 -77147662 + AluSp SINE Alu 54 298 -15 2367 68 3 13 chr6 105269657 105269964 -77145278 + AluSq SINE Alu 1 304 -9 253 188 72 29 chr6 105270023 105270092 -77145150 - MER117 DNA MER1_type 0 197 126 * 395 307 48 32 chr6 105270071 105270260 -77144982 - MER117 DNA MER1_type -4 193 2 1438 120 0 5 chr6 105270483 105270683 -77144559 + AluSg/x SINE Alu 108 306 -6 3321 181 17 16 chr6 105270691 105271333 -77143909 - L1MB7 LINE L1 -54 6130 5488 823 176 0 0 chr6 105271335 105271477 -77143765 - AluJ SINE Alu -15 297 156 438 152 0 0 chr6 105271478 105271544 -77143698 - AluJ SINE Alu -202 110 45 2659 233 22 41 chr6 105271544 105272535 -77142707 - L1MB7 LINE L1 -683 5497 4562 236 250 36 0 chr6 105272785 105272841 -77142401 + L1MEc LINE L1 116 173 -6223 1815 125 64 4 chr6 105273014 105273294 -77141948 - AluSx SINE Alu -15 297 1 27 29 0 0 chr6 105273339 105273373 -77141869 + AT_rich Low_complexity Low_complexity 1 34 0 2279 143 0 37 chr6 105273492 105273841 -77141401 - MER1B DNA MER1_type -1 336 1 404 240 99 75 chr6 105274269 105274561 -77140681 - L1MB7 LINE L1 -1545 4601 4303 2424 85 0 3 chr6 105274620 105274927 -77140315 + AluSc SINE Alu 1 306 -3 820 188 0 0 chr6 105275178 105275311 -77139931 - FLAM_A SINE Alu 0 133 1 188 287 117 0 chr6 105275597 105275691 -77139551 + L2 LINE L2 3209 3313 0 249 33 0 0 chr6 105275733 105275763 -77139479 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 311 20 0 61 chr6 105275762 105275811 -77139431 + (TA)n Simple_repeat Simple_repeat 1 46 0 440 290 42 81 chr6 105275827 105276160 -77139082 - L2 LINE L2 -289 3024 2708 2210 110 0 0 chr6 105276233 105276524 -77138718 + AluSx SINE Alu 1 291 -21 1650 207 21 42 chr6 105277324 105277706 -77137536 + MLT1A2 LTR MaLR 1 374 0 2599 47 0 0 chr6 105277795 105278092 -77137150 + AluY SINE Alu 1 297 -14 518 243 189 27 chr6 105278846 105279031 -77136211 + MER58A DNA MER1_type 9 223 -1 183 377 0 0 chr6 105279549 105279602 -77135640 + L3b LINE CR1 1528 1580 -3 2238 229 98 30 chr6 105279732 105279743 -77135499 + L1ME2 LINE L1 4497 4506 -1658 1853 164 0 28 chr6 105279743 105280061 -77135181 + AluJb SINE Alu 1 309 -3 2238 229 98 30 chr6 105280061 105281408 -77133834 + L1ME2 LINE L1 4506 5948 -216 1037 164 73 109 chr6 105281405 105281585 -77133657 + L1ME1 LINE L1 5718 5903 -263 * 1743 174 3 3 chr6 105281585 105281879 -77133363 + AluSx SINE Alu 2 295 -17 1037 164 73 109 chr6 105281879 105282018 -77133224 + L1ME1 LINE L1 5903 6027 -139 2115 105 7 7 chr6 105282018 105282314 -77132928 - AluSx SINE Alu -16 296 1 1054 243 129 39 chr6 105282862 105283162 -77132080 - LTR16A1 LTR ERVL -9 448 100 1717 178 18 77 chr6 105283162 105283550 -77131692 - MLT1A1 LTR MaLR 0 365 1 1054 243 129 39 chr6 105283550 105283660 -77131582 - LTR16A1 LTR ERVL -357 100 1 225 0 0 0 chr6 105285275 105285300 -77129942 + (A)n Simple_repeat Simple_repeat 1 25 0 230 313 62 23 chr6 105286582 105286710 -77128532 - L2 LINE L2 -1012 2302 2170 451 279 85 23 chr6 105286715 105286891 -77128351 + MIR3 SINE MIR 19 205 -3 181 303 101 55 chr6 105287341 105287450 -77127792 - MIR SINE MIR -19 243 130 437 299 120 27 chr6 105287536 105287720 -77127522 + MIR SINE MIR 46 246 -16 263 266 13 13 chr6 105289477 105289556 -77125686 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 271 154 0 0 chr6 105289809 105289848 -77125394 - U2 snRNA snRNA -147 41 3 375 41 0 0 chr6 105290870 105290919 -77124323 + (CA)n Simple_repeat Simple_repeat 2 50 0 308 283 10 20 chr6 105291109 105291208 -77124034 - MER5B DNA MER1_type -80 98 1 304 301 148 17 chr6 105291233 105291409 -77123833 + MIR SINE MIR 21 219 -43 489 261 125 43 chr6 105292499 105292781 -77122461 - L1ME4a LINE L1 -3 6118 5790 225 0 0 0 chr6 105292781 105292806 -77122436 + (TA)n Simple_repeat Simple_repeat 2 26 0 489 261 125 43 chr6 105292806 105292940 -77122302 - L1ME4a LINE L1 -331 5790 5668 1659 173 24 18 chr6 105292950 105293280 -77121962 - L1MC1 LINE L1 0 6333 6002 307 248 204 0 chr6 105293332 105293469 -77121773 - L1ME4a LINE L1 -1 6120 5956 396 273 96 59 chr6 105293662 105293933 -77121309 - L1ME4a LINE L1 -240 5881 5601 346 295 67 87 chr6 105294370 105294682 -77120560 - L2 LINE L2 0 3272 2967 502 245 229 37 chr6 105294942 105295427 -77119815 - L1ME4a LINE L1 -23 6098 5521 2204 99 0 10 chr6 105295985 105296287 -77118955 + AluY SINE Alu 1 299 -12 442 107 69 0 chr6 105296287 105296446 -77118796 + (TA)n Simple_repeat Simple_repeat 1 170 0 23 54 0 0 chr6 105296480 105296517 -77118725 + AT_rich Low_complexity Low_complexity 1 37 0 700 211 34 11 chr6 105298989 105299164 -77116078 + MIR SINE MIR 81 259 -3 438 345 99 9 chr6 105299194 105299426 -77115816 - MIR SINE MIR -9 253 1 2206 95 0 0 chr6 105299541 105299826 -77115416 + AluSx SINE Alu 9 293 -19 1746 157 11 18 chr6 105300520 105300806 -77114436 - AluJb SINE Alu -26 286 3 2139 103 7 10 chr6 105300851 105301153 -77114089 + AluSq SINE Alu 1 301 -12 290 191 0 0 chr6 105306363 105306410 -77108832 + Alu SINE Alu 1 47 -253 275 355 78 99 chr6 105307812 105308094 -77107148 + L2 LINE L2 2997 3272 0 396 383 28 24 chr6 105309211 105309462 -77105780 - MLT1K LTR MaLR -237 351 100 9200 125 24 10 chr6 105309590 105311026 -77104216 + Tigger1 DNA MER2_type 23 1477 -941 5828 94 28 0 chr6 105311034 105311685 -77103557 - L1PA13 LINE L1 -19 6144 5513 225 0 0 0 chr6 105311685 105311710 -77103532 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 5828 94 28 0 chr6 105311710 105311795 -77103447 - L1PA13 LINE L1 -650 5513 5432 2392 69 0 16 chr6 105311795 105312099 -77103143 - AluY SINE Alu -11 300 2 5828 94 28 0 chr6 105312099 105312320 -77102922 - L1PA13 LINE L1 -731 5432 5177 5868 153 15 23 chr6 105312320 105312422 -77102820 - L1P LINE L1 -739 5422 5321 3293 76 2 5 chr6 105312422 105312869 -77102373 - L1PA7 LINE L1 -3 6151 5706 5868 153 15 23 chr6 105312869 105313943 -77101299 - L1P LINE L1 -840 5321 4250 2158 128 3 3 chr6 105313944 105314272 -77100970 + Tigger1 DNA MER2_type 1483 1810 -608 43549 37 3 6 chr6 105314272 105320441 -77094801 - L1PA3 LINE L1 -1 6154 1 3556 129 25 43 chr6 105320446 105320874 -77094368 + Tigger1 DNA MER2_type 1800 2215 -203 642 201 0 50 chr6 105320874 105321013 -77094229 - FLAM_C SINE Alu 0 133 2 3556 129 25 43 chr6 105321013 105321214 -77094028 + Tigger1 DNA MER2_type 2215 2418 0 306 326 39 4 chr6 105321543 105321572 -77093670 - MIR SINE MIR -25 183 156 437 0 19 0 chr6 105321572 105321625 -77093617 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 186 43 0 0 chr6 105321625 105321648 -77093594 + (CAT)n Simple_repeat Simple_repeat 1 23 0 306 326 39 4 chr6 105321648 105321744 -77093498 - MIR SINE MIR -51 157 51 250 298 0 75 chr6 105321787 105321881 -77093361 - MIR SINE MIR -104 104 18 2008 117 0 0 chr6 105322535 105322809 -77092433 + AluSc SINE Alu 1 274 -35 189 0 0 0 chr6 105322809 105322830 -77092412 + (TA)n Simple_repeat Simple_repeat 2 22 0 303 92 46 0 chr6 105323776 105323841 -77091401 + (TA)n Simple_repeat Simple_repeat 1 68 0 38 22 0 0 chr6 105324000 105324045 -77091197 + AT_rich Low_complexity Low_complexity 1 45 0 322 297 198 34 chr6 105324047 105324356 -77090886 - L1MC/D LINE L1 -2002 5806 5549 1817 167 0 0 chr6 105324356 105324665 -77090577 - AluSx SINE Alu 0 309 1 322 297 198 34 chr6 105324665 105324819 -77090423 - L1MC/D LINE L1 -2259 5549 5266 320 64 21 0 chr6 105325220 105325267 -77089975 + (TA)n Simple_repeat Simple_repeat 1 48 0 1488 54 0 0 chr6 105325267 105325451 -77089791 - L1PA5 LINE L1 -16 6138 5955 273 57 0 0 chr6 105325851 105325886 -77089356 + (TTG)n Simple_repeat Simple_repeat 2 36 0 249 343 118 69 chr6 105327017 105327349 -77087893 - L2 LINE L2 -92 3180 2833 1154 109 0 0 chr6 105327462 105327618 -77087624 + AluSc SINE Alu 137 292 -17 204 40 0 0 chr6 105327903 105327928 -77087314 + (CA)n Simple_repeat Simple_repeat 2 26 0 286 297 72 81 chr6 105328736 105328958 -77086284 + L2 LINE L2 3010 3229 -43 207 0 0 0 chr6 105328964 105328987 -77086255 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 207 114 0 0 chr6 105329195 105329230 -77086012 + (CA)n Simple_repeat Simple_repeat 1 35 0 330 183 20 15 chr6 105329671 105329852 -77085390 + (TA)n Simple_repeat Simple_repeat 1 181 0 1519 184 11 4 chr6 105329852 105330113 -77085129 - AluJo SINE Alu -49 263 1 269 367 22 33 chr6 105330280 105330460 -77084782 - L2 LINE L2 -178 3094 2917 21 0 0 0 chr6 105331343 105331364 -77083878 + AT_rich Low_complexity Low_complexity 1 21 0 309 306 111 30 chr6 105332315 105332550 -77082692 + L1ME4a LINE L1 5313 5566 -2242 2410 258 118 32 chr6 105332566 105333577 -77081665 - L1MC4 LINE L1 0 8042 6945 2216 99 0 7 chr6 105333632 105333926 -77081316 - AluSq SINE Alu -21 292 1 468 196 0 10 chr6 105333926 105334023 -77081219 - L1MC4 LINE L1 -1916 5892 5797 432 339 26 18 chr6 105334053 105334280 -77080962 + L1ME4a LINE L1 5598 5826 -295 315 268 51 38 chr6 105334333 105334490 -77080752 + L1ME4a LINE L1 5959 6117 -4 373 340 33 13 chr6 105335189 105335342 -77079900 - L3b LINE CR1 -215 1368 1213 591 311 134 20 chr6 105335473 105335817 -77079425 - L3b LINE CR1 -93 1490 1108 2068 143 36 0 chr6 105335819 105336154 -77079088 - MER7A DNA MER2_type -1 345 1 284 267 148 30 chr6 105336378 105336479 -77078763 + L2 LINE L2 3201 3313 0 562 218 0 0 chr6 105336637 105336747 -77078495 + FRAM SINE Alu 1 110 -66 184 313 75 0 chr6 105336956 105337023 -77078219 + MIR SINE MIR 90 161 -101 22 56 0 0 chr6 105337851 105337887 -77077355 + AT_rich Low_complexity Low_complexity 1 36 0 1220 138 26 0 chr6 105338292 105338487 -77076755 - Tigger2 DNA MER2_type -12 2706 2507 5318 129 12 20 chr6 105338621 105339453 -77075789 - Tigger2 DNA MER2_type -192 2526 1702 * 8993 141 16 26 chr6 105339447 105339899 -77075343 - Tigger2 DNA MER2_type -1216 1502 1047 5009 21 0 0 chr6 105339899 105340478 -77074764 - L1PA4 LINE L1 -3 6152 5574 8993 141 16 26 chr6 105340478 105341542 -77073700 - Tigger2 DNA MER2_type -1671 1047 1 1003 148 9 78 chr6 105341597 105341814 -77073428 - AluJb SINE Alu -26 286 85 565 284 47 17 chr6 105343659 105343891 -77071351 - MER57A LTR ERV1 0 403 165 235 255 71 28 chr6 105344033 105344168 -77071074 - MER93b LTR ERV1 -280 93 3 294 74 0 18 chr6 105345534 105345586 -77069656 - MLT2B1 LTR ERVL -2 518 483 2270 68 5 3 chr6 105345586 105346941 -77068301 + L1PA5 LINE L1 4716 6152 -2 2741 64 46 13 chr6 105346941 105347329 -77067913 + L1PA8 LINE L1 5769 6172 0 279 195 37 12 chr6 105347335 105347417 -77067825 + (TA)n Simple_repeat Simple_repeat 1 84 0 410 159 38 29 chr6 105347430 105347774 -77067468 + (TA)n Simple_repeat Simple_repeat 1 347 0 425 185 25 19 chr6 105347845 105348007 -77067235 + (TA)n Simple_repeat Simple_repeat 2 164 0 14266 147 25 10 chr6 105348011 105349703 -77065539 - Tigger1 DNA MER2_type 0 2418 678 3370 102 40 14 chr6 105349703 105350201 -77065041 + MER75 DNA T2_type 1 511 -3 14266 147 25 10 chr6 105350201 105350890 -77064352 - Tigger1 DNA MER2_type -1740 678 1 1709 184 31 16 chr6 105350901 105351294 -77063948 - MLT2B1 LTR ERVL -72 443 1 1898 124 26 89 chr6 105351294 105351524 -77063718 - ERVL-B1 LTR ERVL -7 5757 5565 1601 184 42 21 chr6 105351524 105351860 -77063382 + MER2 DNA MER2_type 2 344 0 1898 124 26 89 chr6 105351860 105352055 -77063187 - ERVL-B1 LTR ERVL -199 5565 5359 376 96 0 0 chr6 105352087 105352139 -77063103 + MADE1 DNA Mariner 29 80 0 2172 105 3 0 chr6 105352161 105352457 -77062785 + AluSp SINE Alu 1 297 -16 20155 177 26 33 chr6 105352664 105360488 -77054754 - L1MA1 LINE L1 -1 7720 89 315 0 0 0 chr6 105360488 105360523 -77054719 + (TG)n Simple_repeat Simple_repeat 2 36 0 20155 177 26 33 chr6 105360523 105360596 -77054646 - L1MA1 LINE L1 -7632 89 17 10455 147 33 27 chr6 105360611 105362406 -77052836 - ERVL-B1 LTR ERVL -392 5372 3567 364 85 0 0 chr6 105362398 105362445 -77052797 - ERVL-B1 LTR ERVL -3182 2582 2536 * 754 281 13 13 chr6 105362489 105362713 -77052529 - MIR SINE MIR -28 234 11 251 378 20 26 chr6 105362975 105363126 -77052116 + MIR SINE MIR 80 229 -33 431 367 97 20 chr6 105363321 105363928 -77051314 + L2 LINE L2 2286 2939 -375 550 0 0 0 chr6 105364095 105364160 -77051082 - AluY SINE Alu -17 292 228 566 325 46 4 chr6 105364172 105364409 -77050833 - MIR SINE MIR -2 260 14 728 224 25 7 chr6 105364881 105365047 -77050195 - MIR SINE MIR -56 206 40 336 321 146 46 chr6 105365132 105365427 -77049815 - L2 LINE L2 -221 3051 2697 838 221 43 39 chr6 105365427 105365685 -77049557 - MIR SINE MIR 0 262 4 336 321 146 46 chr6 105365685 105365826 -77049416 - L2 LINE L2 -575 2697 2572 323 271 32 101 chr6 105365921 105366109 -77049133 - MER102b DNA MER1_type -4 337 163 733 138 9 0 chr6 105366118 105366234 -77049008 - AluSp/q SINE Alu -3 310 194 380 340 25 19 chr6 105366238 105366400 -77048842 - MER102b DNA MER1_type -178 163 1 316 307 127 18 chr6 105366755 105366921 -77048321 - MIR SINE MIR -57 205 22 882 195 0 0 chr6 105366999 105367173 -77048069 - L1MD1 LINE L1 -5 6237 6064 4995 244 58 20 chr6 105367178 105368794 -77046448 - L1M4 LINE L1 -1701 4445 2769 331 232 221 0 chr6 105368796 105368891 -77046351 - L1M4 LINE L1 -2343 3803 3688 847 262 11 14 chr6 105368919 105369168 -77046074 - MLT1D LTR MaLR -3 487 262 1200 199 71 18 chr6 105369191 105369528 -77045714 - L1MDa LINE L1 -5104 1436 1082 * 1703 219 57 0 chr6 105369525 105369894 -77045348 - L1MDa LINE L1 -6132 408 19 22 0 0 0 chr6 105370071 105370093 -77045149 + AT_rich Low_complexity Low_complexity 1 22 0 229 292 146 44 chr6 105371341 105371478 -77043764 + L2 LINE L2 3099 3249 -23 309 172 0 0 chr6 105371957 105372021 -77043221 + CT-rich Low_complexity Low_complexity 1 64 0 1762 171 0 11 chr6 105372021 105372307 -77042935 - AluJo SINE Alu -29 283 1 201 319 68 118 chr6 105372637 105372916 -77042326 - L2 LINE L2 -14 3258 2994 1356 235 191 11 chr6 105373633 105374093 -77041149 + L1MC4a LINE L1 7264 7806 -2 2764 10 0 6 chr6 105374294 105374606 -77040636 + AluYb8 SINE Alu 1 310 -8 195 162 0 0 chr6 105377267 105377304 -77037938 + (TA)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr6 105378088 105378111 -77037131 + (TAA)n Simple_repeat Simple_repeat 2 24 0 30 69 0 0 chr6 105378934 105378992 -77036250 + AT_rich Low_complexity Low_complexity 1 58 0 28 0 0 0 chr6 105379326 105379354 -77035888 + AT_rich Low_complexity Low_complexity 1 28 0 310 42 42 0 chr6 105379753 105379801 -77035441 + (TA)n Simple_repeat Simple_repeat 2 51 0 27 62 0 0 chr6 105379902 105379950 -77035292 + AT_rich Low_complexity Low_complexity 1 48 0 420 160 0 0 chr6 105380398 105380473 -77034769 + L1PA16 LINE L1 6086 6160 -6 226 331 155 0 chr6 105380577 105380719 -77034523 - MIR SINE MIR -65 197 34 21 0 0 0 chr6 105383018 105383039 -77032203 + AT_rich Low_complexity Low_complexity 1 21 0 288 275 65 105 chr6 105384164 105384364 -77030878 - L3 LINE CR1 -128 1449 1258 * 322 211 0 0 chr6 105384363 105384420 -77030822 + L2 LINE L2 1734 1790 -1524 357 271 105 23 chr6 105384422 105384555 -77030687 - L2 LINE L2 -8 3305 3162 1115 252 51 175 chr6 105384577 105385053 -77030189 + L2 LINE L2 1800 2333 -981 594 229 7 14 chr6 105385053 105385197 -77030045 - MER104 DNA Tc2 -37 143 1 1115 252 51 175 chr6 105385197 105385866 -77029376 + L2 LINE L2 2333 2929 -385 824 271 163 19 chr6 105386003 105386487 -77028755 - L1ME3A LINE L1 -202 5951 5398 1178 285 72 34 chr6 105386494 105387291 -77027951 - L1ME3A LINE L1 -758 5371 4545 1535 173 7 63 chr6 105387299 105387599 -77027643 + MER68 LTR ERV1 243 525 -37 366 318 53 74 chr6 105387689 105387972 -77027270 - L1ME3A LINE L1 -5701 418 142 1550 193 21 3 chr6 105389174 105389459 -77025783 + AluJo SINE Alu 1 290 -22 205 281 88 0 chr6 105389470 105389527 -77025715 - MIR SINE MIR -122 140 79 1411 184 97 84 chr6 105389564 105389955 -77025287 - MSTD LTR MaLR 0 396 1 2155 117 3 16 chr6 105390768 105391085 -77024157 - AluSq SINE Alu 0 313 1 445 271 111 52 chr6 105391094 105391406 -77023836 + MLT1K LTR MaLR 42 438 -150 2865 177 34 65 chr6 105392519 105393225 -77022017 + L1MD3 LINE L1 7310 7993 -2 214 306 133 31 chr6 105393585 105393683 -77021559 - L2 LINE L2 -2 3311 3204 519 258 75 27 chr6 105393821 105394007 -77021235 + Charlie8 DNA MER1_type 37 231 -2186 248 247 39 39 chr6 105394451 105394528 -77020714 - L2 LINE L2 -8 3264 3188 219 274 48 24 chr6 105394598 105394682 -77020560 - MER5A DNA MER1_type -57 132 47 267 254 0 0 chr6 105394682 105394741 -77020501 + MER69 DNA AcHobo 1 59 -2467 295 214 71 0 chr6 105394883 105394939 -77020303 - MER2 DNA MER2_type 0 345 286 910 192 42 6 chr6 105395098 105395265 -77019977 - MER2 DNA MER2_type -171 174 2 462 205 51 0 chr6 105395265 105395381 -77019861 + MER69 DNA AcHobo 2380 2501 -25 252 59 0 0 chr6 105396600 105396634 -77018608 + (TA)n Simple_repeat Simple_repeat 1 34 0 230 360 47 0 chr6 105396651 105396737 -77018505 - MIR SINE MIR -125 137 48 709 214 7 0 chr6 105397179 105397324 -77017918 + FRAM SINE Alu 1 146 -30 248 0 31 0 chr6 105397327 105397359 -77017883 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 185 238 48 0 chr6 105398264 105398306 -77016936 + L2 LINE L2 3246 3289 -24 21 36 0 0 chr6 105399731 105399759 -77015483 + AT_rich Low_complexity Low_complexity 1 28 0 337 223 78 29 chr6 105403198 105403301 -77011941 - MIR SINE MIR -42 220 113 203 320 33 98 chr6 105404925 105405078 -77010164 - MIR SINE MIR -74 188 46 315 0 0 0 chr6 105405694 105405729 -77009513 + (TG)n Simple_repeat Simple_repeat 1 35 0 192 77 0 0 chr6 105406185 105406211 -77009031 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1972 132 4 0 chr6 105406213 105406494 -77008748 - AluSx SINE Alu -30 282 1 316 320 20 10 chr6 105406584 105406684 -77008558 + MIR SINE MIR 45 145 -63 669 101 0 0 chr6 105406914 105407013 -77008229 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 21 36 0 0 chr6 105407179 105407207 -77008035 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr6 105408493 105408519 -77006723 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 105408537 105408558 -77006684 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr6 105408916 105408975 -77006267 + AT_rich Low_complexity Low_complexity 1 59 0 402 254 101 124 chr6 105408980 105409318 -77005924 - LTR67 LTR ERVL -3 554 225 461 326 34 6 chr6 105409395 105409570 -77005672 + L3 LINE CR1 1385 1564 -13 247 200 108 62 chr6 105409854 105409984 -77005258 + HAL1 LINE L1 56 191 -2316 323 250 0 0 chr6 105410452 105410512 -77004730 - L2 LINE L2 -60 3212 3153 272 306 59 0 chr6 105410661 105410746 -77004496 + MIR SINE MIR 169 258 -4 * 370 319 17 62 chr6 105410721 105410946 -77004296 - MIR SINE MIR -49 213 2 199 333 103 48 chr6 105411694 105411859 -77003383 + MIR SINE MIR 47 220 -42 756 281 57 4 chr6 105412093 105412321 -77002921 - MIR SINE MIR -11 251 12 2343 199 65 16 chr6 105412409 105412966 -77002276 - L1MD3 LINE L1 -1 7994 7411 449 231 0 3 chr6 105412966 105413062 -77002180 - MLT1F1 LTR MaLR -445 122 36 557 230 6 19 chr6 105413063 105413224 -77002018 - L1MD3 LINE L1 -877 7118 6960 10021 215 57 45 chr6 105413405 105414879 -77000363 - L1MB2 LINE L1 -34 6373 4918 1000 148 25 10 chr6 105414879 105415075 -77000167 + L1MA4 LINE L1 6096 6294 -6 10021 215 57 45 chr6 105415075 105415377 -76999865 - L1MB2 LINE L1 -1489 4918 4621 282 29 0 0 chr6 105415377 105415412 -76999830 + (TG)n Simple_repeat Simple_repeat 2 36 0 10021 215 57 45 chr6 105415412 105417254 -76997988 - L1MB2 LINE L1 -1786 4621 2683 246 62 0 0 chr6 105417254 105417286 -76997956 + (TA)n Simple_repeat Simple_repeat 2 33 0 10021 215 57 45 chr6 105417286 105417631 -76997611 - L1MB2 LINE L1 -3724 2683 2344 1671 248 42 67 chr6 105417636 105418313 -76996929 - L1MB2 LINE L1 -4516 1787 945 333 0 0 0 chr6 105418313 105418350 -76996892 + (TG)n Simple_repeat Simple_repeat 2 38 0 1671 248 42 67 chr6 105418350 105418471 -76996771 - L1MB2 LINE L1 -5358 945 823 2478 68 0 3 chr6 105418858 105419169 -76996073 - AluY SINE Alu -1 310 1 625 324 88 36 chr6 105419172 105419563 -76995679 - L1M3de LINE L1 -5215 676 2 2428 63 17 0 chr6 105419728 105420028 -76995214 - AluSc SINE Alu -2 307 3 22 35 0 0 chr6 105420736 105420765 -76994477 + AT_rich Low_complexity Low_complexity 1 29 0 1887 137 3 7 chr6 105421018 105421311 -76993931 + AluSx SINE Alu 4 295 -17 1275 193 90 113 chr6 105421531 105421850 -76993392 - L1MB7 LINE L1 0 6184 5880 2633 114 26 42 chr6 105421850 105422307 -76992935 - L1PB2 LINE L1 -6 6145 5696 1275 193 90 113 chr6 105422307 105422489 -76992753 - L1MB7 LINE L1 -304 5880 5695 1248 138 27 18 chr6 105422489 105422574 -76992668 - Tigger7 DNA MER2_type -1 2586 2503 1254 184 17 9 chr6 105422574 105422807 -76992435 - MER46A DNA MER2_type 0 236 2 1248 138 27 18 chr6 105422807 105422945 -76992297 - Tigger7 DNA MER2_type -84 2503 2361 9562 170 69 25 chr6 105422951 105425137 -76990105 - L1PB2 LINE L1 -743 5403 3122 3993 230 38 62 chr6 105425128 105427504 -76987738 - L1MC/D LINE L1 -571 5762 3545 * 790 307 142 27 chr6 105427516 105428075 -76987167 + L2 LINE L2 2698 3313 0 231 204 0 0 chr6 105428162 105428178 -76987064 + A-rich Low_complexity Low_complexity 1 16 -33 2301 65 13 3 chr6 105428178 105428485 -76986757 + AluY SINE Alu 1 310 -1 231 204 0 0 chr6 105428485 105428517 -76986725 + A-rich Low_complexity Low_complexity 15 49 0 38 51 0 0 chr6 105429239 105429298 -76985944 + AT_rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr6 105429585 105429607 -76985635 + AT_rich Low_complexity Low_complexity 1 22 0 478 308 27 7 chr6 105430155 105430301 -76984941 + MIR SINE MIR 1 149 -113 319 301 121 23 chr6 105430702 105430875 -76984367 - MIR SINE MIR -3 259 70 250 265 60 12 chr6 105432679 105432762 -76982480 - MIR SINE MIR -92 116 30 27 29 0 0 chr6 105433724 105433758 -76981484 + AT_rich Low_complexity Low_complexity 1 34 0 394 274 86 0 chr6 105434126 105434243 -76980999 - L3b LINE CR1 -199 1384 1258 344 111 0 0 chr6 105437018 105437063 -76978179 - AluSq SINE Alu -132 171 127 427 297 60 28 chr6 105437068 105437250 -76977992 + L2 LINE L2 3117 3304 -9 2244 91 3 23 chr6 105437810 105438119 -76977123 + AluY SINE Alu 1 303 -8 227 299 144 0 chr6 105438192 105438289 -76976953 + L3 LINE CR1 976 1086 -491 * 235 313 15 0 chr6 105438284 105438351 -76976891 + MER5A DNA MER1_type 79 146 -43 447 355 116 20 chr6 105438361 105438716 -76976526 + L3 LINE CR1 1091 1479 -98 22 0 0 0 chr6 105438813 105438835 -76976407 + AT_rich Low_complexity Low_complexity 1 22 0 1766 221 127 17 chr6 105439184 105439601 -76975641 - MLT1F LTR MaLR -79 463 1 807 334 40 9 chr6 105439622 105439951 -76975291 - HERV16 LTR ERVL -2807 2189 1851 2330 151 49 0 chr6 105440103 105440494 -76974748 - LTR57 LTR ERVL 0 411 2 302 286 107 14 chr6 105440736 105440876 -76974366 - HERV16 LTR ERVL -4344 1420 1268 263 308 48 19 chr6 105441317 105441421 -76973821 - HERV16 LTR ERVL -5243 521 415 252 276 0 35 chr6 105441761 105441848 -76973394 - LTR33A LTR ERVL 0 523 440 525 292 67 45 chr6 105442981 105443159 -76972083 - MIR3 SINE MIR -11 197 16 352 281 42 72 chr6 105445688 105445855 -76969387 + MIR3 SINE MIR 15 176 -32 280 260 83 10 chr6 105446234 105446330 -76968912 + MER94 DNA DNA 1 103 -31 180 301 138 65 chr6 105447720 105447843 -76967399 + L2 LINE L2 2934 3065 -248 968 203 46 14 chr6 105447851 105448068 -76967174 - MLT1E1 LTR MaLR 0 654 431 11378 199 42 2 chr6 105448171 105450709 -76964533 - L1 LINE L1 -1286 6279 3639 717 176 17 0 chr6 105450708 105450827 -76964415 - L1 LINE L1 -6212 1353 1233 * 2130 123 0 16 chr6 105450831 105451141 -76964101 - THE1B LTR MaLR -59 305 1 3997 191 41 25 chr6 105451141 105451967 -76963275 - L1 LINE L1 -6713 852 14 405 162 10 101 chr6 105451972 105452071 -76963171 - MLT1E1 LTR MaLR -391 263 174 * 654 231 2 0 chr6 105452064 105452189 -76963053 - MLT1E1 LTR MaLR -469 73 8 242 336 0 94 chr6 105452288 105452416 -76962826 + L2 LINE L2 3142 3257 -15 2324 75 14 0 chr6 105452430 105452724 -76962518 + AluY SINE Alu 1 298 -13 1154 211 41 15 chr6 105453107 105453377 -76961865 - MLT1A1 LTR MaLR -2 363 87 265 199 34 16 chr6 105453477 105453548 -76961694 - MLT1A1 LTR MaLR -293 72 1 290 70 0 140 chr6 105453936 105453993 -76961249 - MLT2D LTR ERVL 0 414 366 236 227 39 16 chr6 105453994 105454122 -76961120 + (TA)n Simple_repeat Simple_repeat 1 131 0 1014 186 41 18 chr6 105454203 105454423 -76960819 - MLT2D LTR ERVL -189 225 1 396 339 40 16 chr6 105454733 105454857 -76960385 - L2 LINE L2 -8 3264 3138 2064 119 41 29 chr6 105455316 105455659 -76959583 - THE1B LTR MaLR -17 347 1 1991 104 11 11 chr6 105455734 105456004 -76959238 + AluY SINE Alu 2 271 -40 612 133 19 9 chr6 105456104 105456209 -76959033 - L1P LINE L1 -1166 4980 4875 * 5955 111 5 9 chr6 105456208 105457103 -76958139 + L1PA14 LINE L1 5258 6148 -13 244 331 33 58 chr6 105457290 105457411 -76957831 + L2 LINE L2 3154 3271 -1 188 256 32 115 chr6 105457863 105458019 -76957223 + L3 LINE CR1 345 487 -1090 5280 133 25 5 chr6 105458542 105459720 -76955522 - L1PA15 LINE L1 0 6868 5652 422 141 0 0 chr6 105459721 105459792 -76955450 - L1PA15 LINE L1 -2111 4738 4668 * 3211 229 6 3 chr6 105459790 105460600 -76954642 - L1PA15 LINE L1 -3305 3544 2731 595 265 39 22 chr6 105461277 105461507 -76953735 - L1MC4 LINE L1 -119 7923 7690 1943 203 3 8 chr6 105463367 105463732 -76951510 - MLT1A1 LTR MaLR -2 363 1 435 234 65 0 chr6 105463968 105464075 -76951167 + MER94 DNA DNA 19 132 -2 259 307 89 0 chr6 105464077 105464178 -76951064 + MIR SINE MIR 147 256 -6 315 276 112 0 chr6 105464578 105464676 -76950566 + L2 LINE L2 3204 3312 -1 188 409 61 9 chr6 105466589 105466704 -76948538 + MIR3 SINE MIR 50 170 -38 659 167 0 8 chr6 105467716 105467842 -76947400 + L1P LINE L1 5130 5254 -892 3623 64 6 0 chr6 105469935 105470404 -76944838 + L1PA7 LINE L1 5683 6154 0 494 341 33 0 chr6 105470423 105470728 -76944514 - L1M4c LINE L1 -4896 1488 1174 672 328 108 46 chr6 105471417 105471789 -76943453 + L2 LINE L2 2861 3255 -17 901 198 39 6 chr6 105472095 105472277 -76942965 - MSTB LTR MaLR -237 189 2 477 232 32 59 chr6 105472283 105472447 -76942795 - L1MDa LINE L1 -5020 1520 1362 1891 109 3 85 chr6 105472447 105472776 -76942466 - AluSg SINE Alu -8 302 1 477 232 32 59 chr6 105472776 105472831 -76942411 - L1MDa LINE L1 -5178 1362 1307 271 191 16 16 chr6 105472848 105472911 -76942331 + L1M3c LINE L1 958 1020 -6078 2079 269 30 14 chr6 105473972 105474963 -76940279 + L1M3c LINE L1 1534 2564 -4534 314 279 12 0 chr6 105474963 105475049 -76940193 + L1MC4 LINE L1 6616 6702 -1340 207 204 0 0 chr6 105475083 105475127 -76940115 + (TA)n Simple_repeat Simple_repeat 2 45 0 2844 231 43 52 chr6 105475185 105475579 -76939663 + L1MA8 LINE L1 2611 3007 -4558 2279 92 0 3 chr6 105475579 105475873 -76939369 + AluSg SINE Alu 1 293 -17 2844 231 43 52 chr6 105475873 105476704 -76938538 + L1MA8 LINE L1 3007 3831 -3734 4926 36 11 5 chr6 105476710 105477324 -76937918 + L1PA4 LINE L1 4302 4919 -1227 3979 51 0 0 chr6 105477324 105477807 -76937435 + L1PA4 LINE L1 5664 6155 0 399 113 0 0 chr6 105477836 105477907 -76937335 + (TA)n Simple_repeat Simple_repeat 1 71 0 331 246 105 9 chr6 105477908 105478022 -76937220 + L1MA8 LINE L1 4018 4142 -3423 * 6065 154 26 22 chr6 105478017 105480136 -76935106 + L1MA8 LINE L1 5581 7705 -5 357 245 82 19 chr6 105480156 105480315 -76934927 - L1ME LINE L1 -5255 815 647 258 213 115 33 chr6 105480607 105480729 -76934513 + L1ME4a LINE L1 5987 6118 -3 342 295 40 58 chr6 105481166 105481339 -76933903 - MIR SINE MIR -9 253 84 9704 114 115 10 chr6 105483424 105485054 -76930188 - L1PBa LINE L1 -4429 2434 634 926 206 5 0 chr6 105485059 105485253 -76929989 - L1PBa LINE L1 -6666 197 3 22 35 0 0 chr6 105485272 105485301 -76929941 + AT_rich Low_complexity Low_complexity 1 29 0 1017 121 0 30 chr6 105485422 105485433 -76929809 + L1MA2 LINE L1 5695 5705 -599 1231 113 10 10 chr6 105485433 105485627 -76929615 - L1MA1 LINE L1 -4 6298 6105 1017 121 0 30 chr6 105485627 105485781 -76929461 + L1MA2 LINE L1 5705 5855 -449 216 354 38 13 chr6 105486210 105486289 -76928953 - L2 LINE L2 -1 3271 3191 414 286 73 25 chr6 105487816 105487936 -76927306 - MIR SINE MIR -62 146 37 2127 119 0 3 chr6 105488344 105488638 -76926604 - AluSc SINE Alu -16 293 1 2981 284 64 27 chr6 105488831 105490154 -76925088 + L1MEc LINE L1 25 1396 -5000 919 221 47 8 chr6 105491390 105491625 -76923617 + Charlie4 DNA MER1_type 48 291 -1670 1013 163 17 62 chr6 105491646 105491886 -76923356 + L1P LINE L1 4316 4544 -1602 1220 216 11 14 chr6 105491914 105492201 -76923041 + L1P LINE L1 4984 5269 -877 2213 77 0 46 chr6 105493541 105493865 -76921377 - AluY SINE Alu -2 309 1 804 374 67 18 chr6 105493967 105494564 -76920678 - L3 LINE CR1 -48 1529 904 969 0 0 0 chr6 105494948 105495061 -76920181 - L1HS LINE L1 -134 6021 5909 32 26 0 0 chr6 105495387 105495426 -76919816 + AT_rich Low_complexity Low_complexity 1 39 0 1922 68 0 4 chr6 105495608 105495860 -76919382 + L1PA6 LINE L1 5901 6151 -3 6704 135 10 19 chr6 105496181 105498028 -76917214 - L1MA3 LINE L1 0 6305 4479 312 345 35 0 chr6 105498632 105498748 -76916494 + MIR SINE MIR 47 166 -96 225 323 42 24 chr6 105548769 105548936 -76866306 + HAL1b LINE L1 1179 1348 0 332 119 17 0 chr6 105549786 105549845 -76865397 + (TA)n Simple_repeat Simple_repeat 1 60 0 2266 102 0 10 chr6 105549902 105550206 -76865036 + AluSx SINE Alu 1 301 -11 229 294 173 62 chr6 105551114 105551502 -76863740 - L2 LINE L2 0 3313 2883 251 364 52 13 chr6 105552329 105552483 -76862759 - L2 LINE L2 -556 2758 2599 220 267 13 127 chr6 105552933 105553083 -76862159 + MIR3 SINE MIR 67 199 -9 2302 57 3 0 chr6 105553710 105554037 -76861205 + AluY SINE Alu 1 328 0 227 250 28 0 chr6 105554164 105554236 -76861006 + (TA)n Simple_repeat Simple_repeat 1 74 0 303 241 0 0 chr6 105554316 105554399 -76860843 + (TA)n Simple_repeat Simple_repeat 2 84 0 1627 178 14 11 chr6 105556137 105556418 -76858824 + AluJo SINE Alu 2 283 -29 795 184 133 36 chr6 105556620 105556816 -76858426 + MER58A DNA MER1_type 10 224 0 1594 216 30 59 chr6 105558961 105559466 -76855776 - LTR55 LTR ERV -40 508 19 423 294 58 37 chr6 105559824 105560123 -76855119 - L1ME2 LINE L1 -224 5940 5635 694 227 101 25 chr6 105562751 105562949 -76852293 - MER58C DNA MER1_type 0 215 3 27 0 0 0 chr6 105564300 105564327 -76850915 + AT_rich Low_complexity Low_complexity 1 27 0 795 172 6 61 chr6 105565819 105565999 -76849243 - L1MC1 LINE L1 0 6333 6164 337 383 96 14 chr6 105566079 105566288 -76848954 + MIR SINE MIR 20 245 -17 23 33 0 0 chr6 105566417 105566447 -76848795 + AT_rich Low_complexity Low_complexity 1 30 0 256 270 60 10 chr6 105566464 105566564 -76848678 + Charlie7 DNA MER1_type 1 105 -2507 21 0 0 0 chr6 105566620 105566641 -76848601 + AT_rich Low_complexity Low_complexity 1 21 0 892 191 103 26 chr6 105567081 105567275 -76847967 - AluJo SINE Alu -17 295 87 24 0 0 0 chr6 105567516 105567540 -76847702 + AT_rich Low_complexity Low_complexity 1 24 0 259 350 112 19 chr6 105567668 105568088 -76847154 - L2 LINE L2 -430 2884 2426 1600 179 44 74 chr6 105568093 105568483 -76846759 - MLT1B LTR MaLR -1 389 12 240 282 26 0 chr6 105568930 105569008 -76846234 - L1MC4 LINE L1 -1339 6703 6624 478 320 48 0 chr6 105569261 105569408 -76845834 - L2 LINE L2 0 3313 3160 475 305 27 32 chr6 105570080 105570267 -76844975 + L1MEc LINE L1 1531 1716 -4680 367 309 11 0 chr6 105570349 105570443 -76844799 - L1MEd LINE L1 -5464 655 561 367 201 93 72 chr6 105570631 105570770 -76844472 - L1MEd LINE L1 -5928 191 50 511 257 100 72 chr6 105571137 105571456 -76843786 - L1ME4a LINE L1 0 6121 5794 920 238 32 119 chr6 105573020 105573515 -76841727 + LTR16A1 LTR ERVL 4 455 -2 2280 317 58 31 chr6 105573518 105574077 -76841165 + HERV16 LTR ERVL 6 548 -4448 4640 178 11 17 chr6 105574077 105574946 -76840296 - MER6 DNA MER2_type -1 864 1 2280 317 58 31 chr6 105574946 105575568 -76839674 + HERV16 LTR ERVL 548 1219 -3777 730 294 123 54 chr6 105575713 105576046 -76839196 + LTR16A LTR ERVL 95 450 0 610 329 69 32 chr6 105576046 105576393 -76838849 + HERVL LTR ERVL 3587 3946 -1708 910 368 41 19 chr6 105576444 105576960 -76838282 + HERVL LTR ERVL 4050 4576 -1188 786 196 134 11 chr6 105576964 105577143 -76838099 - MSTB2 LTR MaLR 0 457 257 275 361 14 14 chr6 105577167 105577311 -76837931 - HERVL LTR ERVL -1839 3815 3672 1188 184 53 0 chr6 105577334 105577562 -76837680 - MSTB2 LTR MaLR -217 240 1 478 303 46 51 chr6 105577568 105577759 -76837483 + HERVL LTR ERVL 4540 4733 -775 1452 206 75 37 chr6 105577759 105578133 -76837109 + MLT1B LTR MaLR 1 388 -2 478 303 46 51 chr6 105578133 105578276 -76836966 + HERVL LTR ERVL 4733 4875 -633 1068 244 46 57 chr6 105578815 105579274 -76835968 + LTR16A1 LTR ERVL 4 457 0 424 223 75 89 chr6 105581630 105581912 -76833330 + L1MC5 LINE L1 7649 7926 -35 21 0 0 0 chr6 105581912 105581933 -76833309 + AT_rich Low_complexity Low_complexity 1 21 0 262 326 201 0 chr6 105582182 105582366 -76832876 + MIR SINE MIR 40 260 -2 520 283 152 49 chr6 105582648 105582977 -76832265 - MLT1J2 LTR MaLR -6 444 82 26 50 0 0 chr6 105583497 105583537 -76831705 + AT_rich Low_complexity Low_complexity 1 40 0 1163 141 5 16 chr6 105586650 105586834 -76828408 + AluSg/x SINE Alu 83 264 -46 201 39 0 0 chr6 105586844 105586870 -76828372 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 105587278 105587300 -76827942 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 105587523 105587552 -76827690 + AT_rich Low_complexity Low_complexity 1 29 0 239 265 82 61 chr6 105587604 105587702 -76827540 - MIR SINE MIR -78 184 85 1922 121 67 0 chr6 105588569 105588851 -76826391 - AluSq SINE Alu -12 301 1 8866 97 7 3 chr6 105589033 105590337 -76824905 - L1PA7 LINE L1 -2699 3447 2139 13012 101 5 0 chr6 105590337 105593056 -76822186 + L1PA7 LINE L1 3441 6154 0 2470 238 54 21 chr6 105594393 105595478 -76819764 - L1ME1 LINE L1 -62 6038 4928 6687 133 8 11 chr6 105595486 105596558 -76818684 - Tigger1 DNA MER2_type 0 2418 1350 670 211 25 5 chr6 105596564 105596842 -76818400 - Charlie1b DNA MER1_type -137 386 70 1116 106 0 0 chr6 105596924 105597085 -76818157 - L1PB1 LINE L1 0 6151 5991 222 62 0 0 chr6 105597087 105597119 -76818123 + (A)n Simple_repeat Simple_repeat 1 32 0 1733 242 18 6 chr6 105597119 105597632 -76817610 - L1ME1 LINE L1 -1356 4724 4206 453 205 128 56 chr6 105597676 105597925 -76817317 - L1ME1 LINE L1 -3734 2346 2080 * 1581 250 101 0 chr6 105597924 105598440 -76816802 - L1MD3 LINE L1 -9 7986 7419 1628 256 138 33 chr6 105598481 105599586 -76815656 - L1ME1 LINE L1 -3995 2085 866 5157 178 26 19 chr6 105599596 105600621 -76814621 - L1MC1 LINE L1 -15 6318 5287 807 281 35 14 chr6 105600623 105600989 -76814253 - L1ME1 LINE L1 -5186 884 511 482 314 48 24 chr6 105601017 105601269 -76813973 - L1ME1 LINE L1 -5708 362 105 839 73 0 0 chr6 105601847 105601956 -76813286 + Alu SINE Alu 197 305 -5 583 309 61 6 chr6 105601957 105602138 -76813104 + MIR SINE MIR 41 231 -31 3286 73 2 0 chr6 105602154 105602580 -76812662 - L1PA8 LINE L1 0 6172 5746 207 315 202 10 chr6 105602917 105603120 -76812122 + MIR SINE MIR 2 243 -19 213 213 0 0 chr6 105604468 105604515 -76810727 + GA-rich Low_complexity Low_complexity 2 48 0 2203 98 3 16 chr6 105604705 105605032 -76810210 + AluSx SINE Alu 1 312 0 182 404 0 18 chr6 105605041 105605155 -76810087 + L3 LINE CR1 398 509 -1068 563 297 75 5 chr6 105605220 105605432 -76809810 + MIR SINE MIR 6 232 -30 333 0 0 0 chr6 105606177 105606214 -76809028 + (T)n Simple_repeat Simple_repeat 1 37 0 2478 67 0 10 chr6 105607519 105607831 -76807411 + AluY SINE Alu 1 309 -2 2208 94 0 13 chr6 105608452 105608750 -76806492 - AluY SINE Alu -17 294 1 213 278 19 0 chr6 105608890 105608944 -76806298 - L2 LINE L2 -4 3268 3214 644 124 9 0 chr6 105610555 105610660 -76804582 - AluY SINE Alu -15 296 191 874 246 45 68 chr6 105610780 105611117 -76804125 + MLT1L LTR MaLR 156 484 -131 326 341 93 16 chr6 105611174 105611420 -76803822 + L2 LINE L2 1812 2076 -1238 195 42 0 0 chr6 105612082 105612106 -76803136 + (CA)n Simple_repeat Simple_repeat 1 24 0 290 305 0 37 chr6 105612256 105612338 -76802904 - L2 LINE L2 0 3272 3194 371 185 39 85 chr6 105612734 105612864 -76802378 - MER103 DNA DNA -42 124 1 868 228 73 0 chr6 105613206 105613412 -76801830 - MER58A DNA MER1_type 0 224 4 280 279 231 40 chr6 105614911 105615288 -76799954 + L2 LINE L2 1911 2359 -955 835 218 42 32 chr6 105615322 105615538 -76799704 + MER20 DNA MER1_type 2 219 0 830 232 42 77 chr6 105615631 105615828 -76799414 + MIR SINE MIR 13 200 -62 2300 49 39 39 chr6 105615828 105616136 -76799106 - AluY SINE Alu -1 310 3 830 232 42 77 chr6 105616136 105616197 -76799045 + MIR SINE MIR 200 262 0 317 352 84 28 chr6 105616306 105616485 -76798757 + L2 LINE L2 2616 2804 -510 234 81 0 0 chr6 105619060 105619097 -76796145 + (T)n Simple_repeat Simple_repeat 1 37 0 286 308 176 53 chr6 105619665 105620022 -76795220 - L2 LINE L2 -5 3308 2908 220 120 40 0 chr6 105620172 105620222 -76795020 + (TA)n Simple_repeat Simple_repeat 1 52 0 14008 131 16 5 chr6 105620344 105623253 -76791989 - L1PA10 LINE L1 -5 6163 3235 2112 145 0 0 chr6 105623253 105623556 -76791686 - AluSx SINE Alu -9 303 1 14008 131 16 5 chr6 105623556 105623794 -76791448 - L1PA10 LINE L1 -2933 3235 3001 182 179 15 104 chr6 105623978 105624045 -76791197 + L3 LINE CR1 1312 1372 -205 2630 55 0 0 chr6 105626191 105626500 -76788742 - AluY SINE Alu -2 309 1 2452 81 0 3 chr6 105626582 105626890 -76788352 + AluSp SINE Alu 1 307 -6 1042 100 7 0 chr6 105627256 105627436 -76787806 - AluSq SINE Alu 0 325 145 200 342 91 30 chr6 105627513 105627712 -76787530 + L2 LINE L2 2265 2475 -839 4028 212 28 40 chr6 105627890 105629682 -76785560 + L1P3 LINE L1 3 1878 -4573 191 280 0 0 chr6 105629682 105629732 -76785510 + MIR SINE MIR 154 203 -59 1209 293 96 35 chr6 105629896 105631057 -76784185 + L1M4 LINE L1 2147 3378 -2768 534 286 114 19 chr6 105631097 105631475 -76783767 + L1M4 LINE L1 3674 4087 -2059 4720 154 42 26 chr6 105631649 105632538 -76782704 + MER4D LTR ERV1 1 903 0 204 240 20 0 chr6 105632540 105632590 -76782652 + (ATG)n Simple_repeat Simple_repeat 1 51 0 3367 57 0 26 chr6 105632780 105633240 -76782002 + LTR7 LTR ERV1 1 448 -2 20685 89 9 26 chr6 105633242 105636292 -76778950 + HERVH LTR ERV1 1 2995 -4718 924 122 27 0 chr6 105636271 105636418 -76778824 + HERVH LTR ERV1 3140 3290 -4423 * 3281 125 0 6 chr6 105636408 105636913 -76778329 + HERVH LTR ERV1 3492 3993 -3720 4252 139 11 1 chr6 105636915 105637571 -76777671 + HERVH LTR ERV1 4488 5149 -2564 1385 126 23 0 chr6 105637572 105637787 -76777455 + HERVH LTR ERV1 5600 5819 -1894 * 2451 87 48 13 chr6 105637785 105638164 -76777078 + HERVH LTR ERV1 7322 7713 0 3483 51 0 13 chr6 105638164 105638618 -76776624 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr6 105638629 105638650 -76776592 + AT_rich Low_complexity Low_complexity 1 21 0 234 314 77 41 chr6 105638682 105638851 -76776391 + L3b LINE CR1 1204 1378 -205 2274 81 0 0 chr6 105638975 105639282 -76775960 - AluY SINE Alu 0 307 1 201 89 67 22 chr6 105639366 105639411 -76775831 + (CTTAT)n Simple_repeat Simple_repeat 4 50 0 5469 195 98 10 chr6 105639556 105640596 -76774646 - L1MC1 LINE L1 0 6333 5387 2566 145 38 21 chr6 105640596 105641017 -76774225 - MSTA LTR MaLR 0 428 1 5469 195 98 10 chr6 105641017 105642027 -76773215 - L1MC1 LINE L1 -946 5387 4078 222 330 66 50 chr6 105643152 105643334 -76771908 + L2 LINE L2 2575 2759 -555 2283 242 101 93 chr6 105644120 105645202 -76770040 - MER52A LTR ERV1 0 1755 666 489 170 32 0 chr6 105645387 105645481 -76769761 + MLT2D LTR ERVL 10 106 -308 345 127 0 0 chr6 105645489 105645544 -76769698 - MLT2D LTR ERVL -300 114 60 323 291 35 28 chr6 105645948 105646089 -76769153 - L1MC1 LINE L1 -3814 2332 2191 1434 209 54 7 chr6 105646205 105646501 -76768741 - AluJb SINE Alu 0 312 3 322 314 38 19 chr6 105646803 105646908 -76768334 - HAL1b LINE L1 -741 607 501 434 304 123 12 chr6 105647575 105647746 -76767496 + MIR SINE MIR 59 248 -14 42771 52 1 1 chr6 105647937 105653826 -76761416 + L1PA4 LINE L1 9 5897 -258 2342 66 7 3 chr6 105653826 105654127 -76761115 + AluY SINE Alu 1 302 -9 42771 52 1 1 chr6 105654127 105654385 -76760857 + L1PA4 LINE L1 5897 6154 -1 450 346 49 25 chr6 105654564 105654850 -76760392 + L2 LINE L2 2116 2408 -906 532 354 48 22 chr6 105655005 105655316 -76759926 + L2 LINE L2 2625 2943 -371 252 356 74 30 chr6 105655464 105655599 -76759643 + L2 LINE L2 3171 3311 -2 24 53 0 0 chr6 105655953 105655991 -76759251 + AT_rich Low_complexity Low_complexity 1 38 0 216 67 0 0 chr6 105655997 105656027 -76759215 + (TTA)n Simple_repeat Simple_repeat 2 31 0 429 255 57 9 chr6 105656029 105656135 -76759107 - FLAM_A SINE Alu -19 114 4 689 175 7 7 chr6 105656541 105656678 -76758564 - Charlie1 DNA MER1_type -5 2756 2620 688 289 30 0 chr6 105656663 105656864 -76758378 - Charlie1 DNA MER1_type -2524 237 31 * 186 103 0 0 chr6 105659495 105659524 -76755718 + (GGA)n Simple_repeat Simple_repeat 2 30 0 254 242 32 65 chr6 105659654 105659778 -76755464 - MER103 DNA DNA -8 158 39 33 43 0 0 chr6 105660846 105660893 -76754349 + AT_rich Low_complexity Low_complexity 1 47 0 22 88 0 0 chr6 105662925 105662982 -76752260 + AT_rich Low_complexity Low_complexity 1 57 0 410 179 13 0 chr6 105663807 105663885 -76751357 - MER116 DNA Mariner 0 80 2 1410 255 34 32 chr6 105664919 105665393 -76749849 - L1ME1 LINE L1 0 6166 5692 1362 234 39 18 chr6 105665418 105665837 -76749405 + L1ME LINE L1 5189 5618 -548 1018 325 91 41 chr6 105665967 105666084 -76749158 + L2 LINE L2 2203 2313 -1000 2178 108 0 29 chr6 105666084 105666399 -76748843 + AluSx SINE Alu 1 306 -6 1018 325 91 41 chr6 105666399 105667267 -76747975 + L2 LINE L2 2313 3309 -4 6089 181 33 14 chr6 105669688 105671455 -76743787 - L1MC1 LINE L1 0 6333 4547 737 172 0 0 chr6 105671896 105672012 -76743230 - FLAM_C SINE Alu -15 118 3 22 35 0 0 chr6 105672550 105672579 -76742663 + AT_rich Low_complexity Low_complexity 1 29 0 350 215 85 54 chr6 105672888 105673018 -76742224 - LTR16B LTR ERVL -330 134 1 264 275 66 11 chr6 105673095 105673186 -76742056 - MIR SINE MIR -18 244 149 22 35 0 0 chr6 105673190 105673219 -76742023 + AT_rich Low_complexity Low_complexity 1 29 0 3525 210 142 38 chr6 105673689 105674942 -76740300 - Charlie1 DNA MER1_type -80 2681 1 385 346 37 5 chr6 105675094 105675282 -76739960 + MIR SINE MIR 42 235 -27 569 295 76 62 chr6 105675408 105675778 -76739464 - MLT1J LTR MaLR -102 409 35 868 287 91 20 chr6 105677668 105678065 -76737177 + L2 LINE L2 2886 3310 -3 1907 177 22 32 chr6 105678637 105679038 -76736204 + MLT2C1 LTR ERVL 1 397 0 187 348 34 0 chr6 105679073 105679162 -76736080 + MIR SINE MIR 170 261 -1 191 352 0 0 chr6 105679388 105679442 -76735800 + MIR SINE MIR 39 92 -170 24 0 0 0 chr6 105680424 105680448 -76734794 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr6 105680984 105681007 -76734235 + AT_rich Low_complexity Low_complexity 1 23 0 320 258 55 39 chr6 105681076 105681204 -76734038 - L1ME LINE L1 -350 5820 5691 30 0 0 0 chr6 105681239 105681269 -76733973 + AT_rich Low_complexity Low_complexity 1 30 0 192 163 0 0 chr6 105682101 105682144 -76733098 + T-rich Low_complexity Low_complexity 2 44 0 21 36 0 0 chr6 105682886 105682914 -76732328 + AT_rich Low_complexity Low_complexity 1 28 0 793 305 116 49 chr6 105683461 105684032 -76731210 + L2 LINE L2 1801 2409 -905 197 108 27 0 chr6 105684341 105684378 -76730864 + CT-rich Low_complexity Low_complexity 3 40 0 248 336 99 18 chr6 105684419 105684682 -76730560 + L2 LINE L2 2932 3276 -37 2313 67 3 17 chr6 105685177 105685475 -76729767 - AluSq SINE Alu -17 296 3 1359 182 61 30 chr6 105685692 105685988 -76729254 - AluJo SINE Alu -7 305 1 24 83 0 12 chr6 105689970 105690023 -76725219 + AT_rich Low_complexity Low_complexity 1 54 -29 2853 84 5 0 chr6 105690023 105690416 -76724826 + L1PA13 LINE L1 5767 6161 -2 24 83 0 12 chr6 105690416 105690446 -76724796 + AT_rich Low_complexity Low_complexity 54 83 0 1780 117 61 0 chr6 105690589 105690853 -76724389 + AluSq SINE Alu 2 281 -32 483 18 0 0 chr6 105690853 105690909 -76724333 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 225 94 0 0 chr6 105691213 105691245 -76723997 + (TG)n Simple_repeat Simple_repeat 2 33 0 1590 181 3 17 chr6 105691245 105691532 -76723710 - AluJo SINE Alu -27 285 3 425 356 45 6 chr6 105691688 105691865 -76723377 - MIR SINE MIR -55 207 24 23 0 0 0 chr6 105692639 105692662 -76722580 + AT_rich Low_complexity Low_complexity 1 23 0 381 43 0 0 chr6 105694207 105694254 -76720988 + (CAA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr6 105694937 105694959 -76720283 + AT_rich Low_complexity Low_complexity 1 22 0 503 269 91 24 chr6 105695028 105695236 -76720006 + MIR SINE MIR 10 231 -31 241 357 82 10 chr6 105697430 105697595 -76717647 - MIR SINE MIR -76 186 12 713 291 5 11 chr6 105697595 105697784 -76717458 - MER5A DNA MER1_type 0 189 2 849 283 90 0 chr6 105697867 105698100 -76717142 + MIR SINE MIR 9 262 0 507 134 0 0 chr6 105699581 105699663 -76715579 + (TA)n Simple_repeat Simple_repeat 1 82 0 1501 237 84 18 chr6 105701343 105702269 -76712973 + L1MEc LINE L1 32 1064 -5332 21 0 0 0 chr6 105702509 105702530 -76712712 + AT_rich Low_complexity Low_complexity 1 21 0 1127 121 12 0 chr6 105702692 105702865 -76712377 - AluSc SINE Alu -2 307 133 244 219 39 0 chr6 105703334 105703462 -76711780 + (TA)n Simple_repeat Simple_repeat 2 134 0 338 226 0 10 chr6 105703730 105703832 -76711410 + CT-rich Low_complexity Low_complexity 4 104 0 257 339 55 24 chr6 105703854 105703981 -76711261 - L2 LINE L2 -4 3309 3179 444 284 64 9 chr6 105704281 105704390 -76710852 - L2 LINE L2 -5 3308 3194 21 57 0 0 chr6 105704720 105704755 -76710487 + AT_rich Low_complexity Low_complexity 1 35 0 221 368 63 0 chr6 105705508 105705603 -76709639 + L3b LINE CR1 1452 1552 -31 355 291 168 17 chr6 105707736 105707915 -76707327 - MIR SINE MIR -16 246 41 231 36 0 0 chr6 105709523 105709551 -76705691 + (TG)n Simple_repeat Simple_repeat 1 28 0 283 250 113 0 chr6 105710937 105711017 -76704225 - L2 LINE L2 0 3272 3184 23 33 0 0 chr6 105711729 105711759 -76703483 + AT_rich Low_complexity Low_complexity 1 30 0 210 250 0 0 chr6 105713020 105713060 -76702182 + polypyrimidine Low_complexity Low_complexity 1 40 0 207 0 0 0 chr6 105713890 105713913 -76701329 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 244 237 0 0 chr6 105714375 105714434 -76700808 + (TA)n Simple_repeat Simple_repeat 1 59 0 280 257 131 102 chr6 105714584 105714790 -76700452 - MIR SINE MIR -18 244 33 454 310 107 37 chr6 105715164 105715406 -76699836 + MIR SINE MIR 4 262 0 392 113 0 16 chr6 105715408 105715470 -76699772 + AluS SINE Alu 1 61 -240 568 288 81 10 chr6 105716009 105716207 -76699035 + MIR SINE MIR 49 260 -2 569 103 19 0 chr6 105717703 105717810 -76697432 + (CATA)n Simple_repeat Simple_repeat 4 112 0 2652 93 16 3 chr6 105718044 105718411 -76696831 + THE1C LTR MaLR 1 372 -3 13148 48 0 1 chr6 105718442 105720837 -76694405 - L1PA5 LINE L1 -4 6150 3751 702 107 9 18 chr6 105720837 105720949 -76694293 + L1P LINE L1 550 660 -5486 * 2509 69 6 3 chr6 105720944 105721291 -76693951 + L1P LINE L1 1303 1650 -4496 2304 217 34 10 chr6 105721428 105721973 -76693269 - MER4D LTR ERV1 -271 543 1 382 300 115 24 chr6 105722163 105722503 -76692739 - L1M4 LINE L1 -2074 4072 3702 608 308 91 29 chr6 105722678 105723338 -76691904 - L1M4 LINE L1 -2884 3262 2562 27 62 0 0 chr6 105724473 105724521 -76690721 + AT_rich Low_complexity Low_complexity 1 48 0 852 202 0 33 chr6 105724840 105725023 -76690219 - FRAM SINE Alu 0 176 1 210 143 0 0 chr6 105725455 105725490 -76689752 + (TATG)n Simple_repeat Simple_repeat 3 37 0 24 0 0 0 chr6 105725670 105725694 -76689548 + AT_rich Low_complexity Low_complexity 1 24 0 5710 109 7 36 chr6 105725768 105726948 -76688294 - L1PB1 LINE L1 -3 6148 4970 26 50 0 0 chr6 105727908 105727948 -76687294 + AT_rich Low_complexity Low_complexity 1 40 0 452 236 209 28 chr6 105729921 105730103 -76685139 + MIR SINE MIR 48 262 0 23 54 0 0 chr6 105731350 105731387 -76683855 + AT_rich Low_complexity Low_complexity 1 37 0 383 273 152 30 chr6 105734075 105734339 -76680903 - MLT1L LTR MaLR -97 518 223 1427 244 83 14 chr6 105734528 105735048 -76680194 - Charlie7 DNA MER1_type -1751 861 306 600 321 64 9 chr6 105735061 105735279 -76679963 - MIR SINE MIR -26 236 7 2333 56 0 3 chr6 105735839 105736124 -76679118 + AluY SINE Alu 8 291 -20 3152 55 0 0 chr6 105736288 105736688 -76678554 - L1P LINE L1 -3869 2277 1878 26 30 0 0 chr6 105737553 105737586 -76677656 + AT_rich Low_complexity Low_complexity 1 33 0 267 246 100 36 chr6 105737833 105737943 -76677299 - L2 LINE L2 -208 3064 2948 22 35 0 0 chr6 105739446 105739475 -76675767 + AT_rich Low_complexity Low_complexity 1 29 0 381 169 22 11 chr6 105739477 105739566 -76675676 - L1PA16 LINE L1 -132 6034 5945 434 173 12 0 chr6 105739852 105739933 -76675309 + MER69 DNA AcHobo 29 110 -2416 272 169 60 72 chr6 105739965 105740048 -76675194 + MER69 DNA AcHobo 2436 2517 -9 329 187 13 0 chr6 105740816 105740891 -76674351 + CT-rich Low_complexity Low_complexity 1 76 0 199 197 197 16 chr6 105741128 105741189 -76674053 + MIR SINE MIR 186 257 -5 22 0 0 0 chr6 105742005 105742027 -76673215 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr6 105744839 105744869 -76670373 + AT_rich Low_complexity Low_complexity 1 30 0 621 248 147 10 chr6 105745229 105745427 -76669815 - MIR SINE MIR -1 261 37 34 0 0 0 chr6 105745537 105745571 -76669671 + AT_rich Low_complexity Low_complexity 1 34 0 356 267 9 0 chr6 105747159 105747264 -76667978 + L1ME3A LINE L1 6042 6147 -23 244 304 0 0 chr6 105747997 105748066 -76667176 + MER103 DNA DNA 11 79 -87 25 0 0 0 chr6 105748991 105749016 -76666226 + AT_rich Low_complexity Low_complexity 1 25 0 1941 136 17 0 chr6 105751025 105751319 -76663923 + AluSc SINE Alu 1 299 -10 296 228 22 22 chr6 105751952 105752044 -76663198 + L1MEc LINE L1 946 1037 -5082 351 273 143 50 chr6 105752054 105752652 -76662590 + L1MEc LINE L1 -18 752 -5558 603 308 43 31 chr6 105752669 105753114 -76662128 + L1MEc LINE L1 889 1338 -4791 1401 243 87 54 chr6 105753131 105753867 -76661375 + L1MEc LINE L1 1451 2210 -4100 215 268 0 0 chr6 105754105 105754161 -76661081 + L2 LINE L2 3257 3312 -1 766 175 0 14 chr6 105754605 105754748 -76660494 + FLAM_C SINE Alu 1 141 -2 393 348 63 9 chr6 105755934 105756155 -76659087 + L1MEc LINE L1 1022 1254 -4877 2282 116 3 32 chr6 105756155 105756721 -76658521 + MER51A LTR ERV1 1 634 0 982 252 21 0 chr6 105756823 105757065 -76658177 - L1M4 LINE L1 -1410 4736 4490 787 147 112 0 chr6 105757067 105757237 -76658005 + L1MC1 LINE L1 6139 6327 -6 2231 263 53 12 chr6 105757248 105758182 -76657060 + L1MEc LINE L1 3021 3993 -2136 2508 98 5 28 chr6 105858505 105858902 -76556340 + L1MA1 LINE L1 5896 6283 -19 23 33 0 0 chr6 105859225 105859255 -76555987 + AT_rich Low_complexity Low_complexity 1 30 0 234 239 0 0 chr6 105859491 105859537 -76555705 + CT-rich Low_complexity Low_complexity 3 48 0 4886 160 49 13 chr6 105859638 105860277 -76554965 - L1PA16 LINE L1 -39 6127 5512 2350 77 0 0 chr6 105860277 105860588 -76554654 - AluY SINE Alu 0 311 1 4886 160 49 13 chr6 105860588 105861284 -76553958 - L1PA16 LINE L1 -654 5512 4749 2425 156 23 3 chr6 105861393 105861968 -76553274 + L1M1 LINE L1 5105 5692 -608 4124 68 13 0 chr6 105862069 105862597 -76552645 + HERVL-A1 LTR ERVL 4430 4964 -690 2059 93 0 0 chr6 105862628 105862887 -76552355 - AluY SINE Alu -18 293 35 5531 69 7 0 chr6 105862890 105863589 -76551653 + HERVL-A1 LTR ERVL 4951 5654 0 3409 64 14 5 chr6 105863589 105864027 -76551215 + MLT2A1 LTR ERVL 1 442 -2 4266 171 55 6 chr6 105865208 105866061 -76549181 - L1MC3 LINE L1 0 7785 6891 12542 187 20 17 chr6 105866061 105869308 -76545934 + L1PA14 LINE L1 2574 5832 -329 31 0 0 0 chr6 105870842 105870873 -76544369 + AT_rich Low_complexity Low_complexity 1 31 0 1906 251 112 64 chr6 105870893 105871706 -76543536 - L1MEc LINE L1 -2682 3533 2760 2345 80 0 0 chr6 105871706 105871992 -76543250 - AluY SINE Alu -16 295 10 1906 251 112 64 chr6 105871992 105872779 -76542463 - L1MEc LINE L1 -3455 2760 1864 17945 155 71 40 chr6 105872788 105877246 -76537996 + L1P3 LINE L1 66 4826 -1635 304 71 0 141 chr6 105877381 105877431 -76537811 - L1MA4A LINE L1 -235 6068 6033 1974 82 4 4 chr6 105877431 105877701 -76537541 - L1PA8 LINE L1 0 6172 5903 304 71 0 141 chr6 105877701 105877735 -76537507 - L1MA4A LINE L1 -270 6033 5996 790 203 20 5 chr6 105877738 105877940 -76537302 + L1MA4 LINE L1 6087 6291 -9 913 353 46 30 chr6 105877960 105878594 -76536648 - HERV16 LTR ERVL -4047 949 306 1675 200 0 10 chr6 105879007 105879312 -76535930 + AluJb SINE Alu 1 302 -10 715 272 50 42 chr6 105879335 105879574 -76535668 - LTR16B LTR ERVL -223 241 1 523 259 13 38 chr6 105879895 105880053 -76535189 + L2 LINE L2 3160 3313 0 184 191 238 0 chr6 105880392 105880434 -76534808 - L2 LINE L2 -8 3305 3254 21 43 0 22 chr6 105881098 105881119 -76534123 + AT_rich Low_complexity Low_complexity 1 21 -24 2590 49 0 7 chr6 105881119 105881424 -76533818 + AluY SINE Alu 1 303 -8 21 43 0 22 chr6 105881424 105881448 -76533794 + AT_rich Low_complexity Low_complexity 21 45 0 1208 257 38 32 chr6 105881603 105881976 -76533266 - L1ME LINE L1 -357 5809 5435 1413 206 6 50 chr6 105881977 105882317 -76532925 + L1ME2 LINE L1 5829 6153 -11 362 243 285 0 chr6 105882621 105882909 -76532333 - L1ME4a LINE L1 -9 6112 5743 212 211 19 0 chr6 105882937 105882989 -76532253 + L2 LINE L2 3261 3313 0 333 0 0 0 chr6 105885291 105885328 -76529914 + (CA)n Simple_repeat Simple_repeat 1 37 0 14680 163 15 24 chr6 105886469 105890351 -76524891 - L1PA14 LINE L1 -27 6134 2278 31984 77 9 3 chr6 105890456 105894602 -76520640 - HERVL-A1 LTR ERVL -1482 4172 1 3203 83 9 7 chr6 105894602 105895045 -76520197 - MLT2A1 LTR ERVL 0 444 1 183 80 0 0 chr6 105895994 105896019 -76519223 + (TAAG)n Simple_repeat Simple_repeat 3 27 0 269 241 0 0 chr6 105896207 105896261 -76518981 + MIR SINE MIR 111 164 -98 24 0 0 0 chr6 105896959 105896983 -76518259 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 105897082 105897107 -76518135 + AT_rich Low_complexity Low_complexity 1 25 0 1860 148 0 4 chr6 105897566 105897843 -76517399 + AluSq SINE Alu 5 280 -33 306 0 0 0 chr6 105897843 105897877 -76517365 + (CA)n Simple_repeat Simple_repeat 1 34 0 883 152 7 7 chr6 105897880 105898025 -76517217 + FRAM SINE Alu 11 155 -21 1788 263 145 51 chr6 105899030 105899290 -76515952 - L1MC4 LINE L1 -653 7389 7155 246 62 0 0 chr6 105899290 105899322 -76515920 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1788 263 145 51 chr6 105899322 105899998 -76515244 - L1MC4 LINE L1 -887 7155 6365 2063 233 23 10 chr6 105900102 105900676 -76514566 - L1ME2 LINE L1 -232 5948 5373 2982 276 114 14 chr6 105900717 105902079 -76513163 - L1ME2 LINE L1 -1082 5064 3566 3014 220 68 7 chr6 105902209 105903483 -76511759 - L1PA13 LINE L1 -3700 3097 1396 795 295 97 42 chr6 105903486 105903999 -76511243 - L1PA13 LINE L1 -5529 1258 660 5712 157 26 2 chr6 105904200 105905181 -76510061 - HSMAR2 DNA Mariner -294 1008 4 336 308 107 58 chr6 105906027 105906325 -76508917 + L1M4 LINE L1 2734 3069 -3077 2143 116 7 0 chr6 105906325 105906619 -76508623 + AluSx SINE Alu 1 296 -16 336 308 107 58 chr6 105906619 105906824 -76508418 + L1M4 LINE L1 3069 3262 -2884 13925 139 36 12 chr6 105906830 105909179 -76506063 - Tigger1 DNA MER2_type -14 2404 1 512 271 0 0 chr6 105909188 105909295 -76505947 + Tigger3(Golem) DNA MER2_type 2 108 -2921 291 217 0 33 chr6 105909286 105909346 -76505896 + Tigger3(Golem) DNA MER2_type 2278 2335 -694 * 875 323 48 79 chr6 105909777 105910042 -76505200 - L2 LINE L2 -1 3312 3040 288 0 0 0 chr6 105910042 105910074 -76505168 + (TG)n Simple_repeat Simple_repeat 2 33 0 875 323 48 79 chr6 105910074 105910572 -76504670 - L2 LINE L2 -273 3040 2561 1469 295 184 23 chr6 105910577 105911245 -76503997 - L2 LINE L2 -1340 1974 1162 228 35 0 0 chr6 105911245 105911274 -76503968 + (TG)n Simple_repeat Simple_repeat 2 30 0 1469 295 184 23 chr6 105911274 105911381 -76503861 - L2 LINE L2 -2152 1162 1074 3268 152 79 13 chr6 105911382 105912002 -76503240 + L1MC1 LINE L1 5635 6295 -38 234 62 0 0 chr6 105912406 105912438 -76502804 + (CA)n Simple_repeat Simple_repeat 1 32 0 252 305 42 8 chr6 105913008 105913126 -76502116 - MER103 DNA DNA -34 132 11 1223 162 35 9 chr6 105913373 105913602 -76501640 - MER96B DNA MER1_type? -182 235 1 229 286 57 19 chr6 105914113 105914218 -76501024 + MER103 DNA DNA 56 164 -2 297 0 0 0 chr6 105914222 105914255 -76500987 + (TA)n Simple_repeat Simple_repeat 2 34 0 26 50 0 0 chr6 105917209 105917249 -76497993 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr6 105918171 105918191 -76497051 + (T)n Simple_repeat Simple_repeat 1 20 0 213 313 95 82 chr6 105918569 105918716 -76496526 + MIR SINE MIR 40 188 -74 558 298 147 38 chr6 105919088 105919537 -76495705 + MLT1H1 LTR MaLR 34 531 -24 2103 126 10 0 chr6 105919817 105920118 -76495124 + AluSx SINE Alu 1 304 -8 2169 32 111 0 chr6 105920720 105921000 -76494242 + AluY SINE Alu 1 311 0 182 37 37 0 chr6 105921192 105921219 -76494023 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 2183 90 0 0 chr6 105921504 105921783 -76493459 + AluSc SINE Alu 24 302 -7 268 221 161 87 chr6 105921887 105922036 -76493206 - MER5A DNA MER1_type -22 167 8 276 171 261 11 chr6 105922058 105922146 -76493096 - MER103 DNA DNA -48 118 9 25 51 0 0 chr6 105924344 105924383 -76490859 + AT_rich Low_complexity Low_complexity 1 39 0 215 240 0 0 chr6 105926165 105926215 -76489027 - MIR SINE MIR -26 236 187 189 74 0 0 chr6 105926749 105926776 -76488466 + (TC)n Simple_repeat Simple_repeat 2 28 0 514 311 150 28 chr6 105926826 105927260 -76487982 - MER20B DNA MER1_type -252 531 45 256 286 0 0 chr6 105927995 105928058 -76487184 - L2 LINE L2 -1 3271 3209 2153 127 0 9 chr6 105928378 105928693 -76486549 - AluSx SINE Alu 0 312 1 238 341 129 0 chr6 105928851 105928983 -76486259 - MIR SINE MIR -6 256 108 328 258 54 40 chr6 105929341 105929494 -76485748 - MIR SINE MIR -62 200 45 464 288 51 0 chr6 105930473 105930591 -76484651 - L2 LINE L2 0 3313 3190 28 29 0 0 chr6 105932499 105932534 -76482708 + AT_rich Low_complexity Low_complexity 1 35 0 198 167 0 0 chr6 105933790 105933826 -76481416 + (TG)n Simple_repeat Simple_repeat 1 36 0 2588 160 0 2 chr6 105937031 105937456 -76477786 - THE1C-int LTR MaLR -1153 427 4 1626 169 63 41 chr6 105937459 105937826 -76477416 - THE1C LTR MaLR 0 375 1 285 246 0 0 chr6 105937827 105937884 -76477358 - MLT1E2 LTR MaLR -551 75 19 1761 192 0 10 chr6 105938560 105938868 -76476374 - AluSx SINE Alu -5 307 3 346 277 38 122 chr6 105938995 105939130 -76476112 - HAL1 LINE L1 -1317 1190 1045 2075 105 99 9 chr6 105939130 105939464 -76475778 - THE1B LTR MaLR 0 364 1 346 277 38 122 chr6 105939464 105939671 -76475571 - HAL1 LINE L1 -1462 1045 877 1255 232 77 35 chr6 105939799 105940200 -76475042 - MLT1D LTR MaLR -13 492 75 1486 191 75 36 chr6 105940200 105940561 -76474681 - THE1C LTR MaLR 0 375 1 7120 144 4 20 chr6 105940561 105941733 -76473509 - THE1C-int LTR MaLR 0 1580 427 27 29 0 0 chr6 105941943 105941977 -76473265 + AT_rich Low_complexity Low_complexity 1 34 0 331 306 107 46 chr6 105942395 105942656 -76472586 + L1M4 LINE L1 2896 3172 -2974 36 77 0 0 chr6 105942727 105942805 -76472437 + AT_rich Low_complexity Low_complexity 1 78 0 589 266 0 0 chr6 105942909 105943033 -76472209 - FLAM_A SINE Alu -9 124 1 29 28 0 0 chr6 105943464 105943500 -76471742 + AT_rich Low_complexity Low_complexity 1 36 0 2847 214 50 28 chr6 105943502 105944225 -76471017 + L1MA9 LINE L1 5513 6251 -61 6900 61 22 0 chr6 105944227 105945160 -76470082 - L1PA7 LINE L1 0 6154 5221 387 329 108 33 chr6 105945529 105945863 -76469379 + L1M4 LINE L1 4478 4836 -1310 265 327 111 19 chr6 105945930 105946092 -76469150 + L2 LINE L2 3133 3309 -4 28 48 0 0 chr6 105946258 105946300 -76468942 + AT_rich Low_complexity Low_complexity 1 42 0 324 331 30 6 chr6 105946547 105946716 -76468526 + L1MEc LINE L1 27 199 -6197 843 266 84 75 chr6 105947030 105948118 -76467124 + L1MEc LINE L1 601 1717 -4498 21 82 0 0 chr6 105948181 105948230 -76467012 + AT_rich Low_complexity Low_complexity 1 49 0 6111 96 2 5 chr6 105948230 105949869 -76465373 - L1PA8 LINE L1 -6 6166 4536 180 245 0 0 chr6 105950202 105950255 -76464987 + CT-rich Low_complexity Low_complexity 4 56 0 2270 108 12 14 chr6 105951169 105951513 -76463729 + L1PA14 LINE L1 5814 6156 -5 1472 208 9 15 chr6 105951606 105951933 -76463309 - L1MC3 LINE L1 -937 6848 6524 4861 201 31 42 chr6 105951938 105953157 -76462085 - L1MC3 LINE L1 -744 5402 5213 1727 265 87 45 chr6 105953170 105953746 -76461496 - L1MCb LINE L1 -5191 854 303 216 0 0 0 chr6 105953746 105953770 -76461472 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1992 129 0 0 chr6 105953772 105954051 -76461191 - AluSx SINE Alu -31 281 3 1727 265 87 45 chr6 105954051 105954289 -76460953 - L1MCb LINE L1 -5742 303 3 27 29 0 0 chr6 105954318 105954352 -76460890 + AT_rich Low_complexity Low_complexity 1 34 0 376 355 9 6 chr6 105954892 105955124 -76460118 + L3 LINE CR1 343 618 -959 3366 115 29 4 chr6 105955128 105955674 -76459568 + L1PA13 LINE L1 5598 6157 -6 24 0 0 0 chr6 105955674 105955698 -76459544 + AT_rich Low_complexity Low_complexity 1 24 0 303 338 19 75 chr6 105955865 105956070 -76459172 + HAL1 LINE L1 1396 1590 -917 309 89 0 0 chr6 105956070 105956115 -76459127 + (CA)n Simple_repeat Simple_repeat 2 46 0 954 234 47 29 chr6 105956237 105956515 -76458727 + L1ME3A LINE L1 5512 5794 -368 489 307 28 6 chr6 105956530 105956709 -76458533 + LTR16C LTR ERVL 309 491 0 359 286 57 20 chr6 105956711 105956883 -76458359 + L1ME3A LINE L1 5977 6155 -15 37 52 0 0 chr6 105957074 105957132 -76458110 + AT_rich Low_complexity Low_complexity 1 58 0 1894 191 39 43 chr6 105959452 105959919 -76455323 + MER31B LTR ERV1 2 466 0 645 291 45 23 chr6 105959927 105960147 -76455095 - MIR SINE MIR -23 239 15 1974 138 3 0 chr6 105961163 105961470 -76453772 + AluSx SINE Alu 1 308 0 244 277 15 0 chr6 105961560 105961625 -76453617 + CT-rich Low_complexity Low_complexity 4 69 0 22 0 0 0 chr6 105961844 105961866 -76453376 + AT_rich Low_complexity Low_complexity 1 22 0 2021 105 0 37 chr6 105961974 105962311 -76452931 + AluY SINE Alu 1 326 0 320 249 141 93 chr6 105962700 105963054 -76452188 - HAL1 LINE L1 -3 2504 2134 360 246 9 42 chr6 105963316 105963475 -76451767 + CT-rich Low_complexity Low_complexity 1 153 0 281 100 120 0 chr6 105963731 105963781 -76451461 - MLT1K LTR MaLR -3 585 530 3603 173 31 20 chr6 105963865 105964606 -76450636 + L1MB2 LINE L1 5420 6168 -3 2762 7 0 0 chr6 105965917 105966220 -76449022 + AluYa5 SINE Alu 1 303 -8 21 0 0 0 chr6 105967320 105967341 -76447901 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 105968871 105968896 -76446346 + AT_rich Low_complexity Low_complexity 1 25 0 1518 228 63 12 chr6 105970065 105970477 -76444765 - MER63B DNA MER1_type 0 436 4 30 77 0 0 chr6 105970743 105970808 -76444434 + AT_rich Low_complexity Low_complexity 1 65 0 285 266 109 23 chr6 105974280 105974408 -76440834 - MIR SINE MIR -19 243 105 447 324 102 23 chr6 105976067 105976588 -76438654 - L1MC/D LINE L1 -460 5702 5255 278 225 306 18 chr6 105977715 105977826 -76437416 - MIR SINE MIR -77 185 43 3447 67 2 0 chr6 105978037 105978483 -76436759 + L1PA7 LINE L1 5707 6153 -1 861 81 81 0 chr6 105978696 105978819 -76436423 + MER85 DNA T2_type 5 137 -2 1487 165 88 51 chr6 105979624 105979976 -76435266 - MLT1A1 LTR MaLR 0 365 1 443 320 10 10 chr6 105980193 105980387 -76434855 - HAL1 LINE L1 -904 1603 1410 2813 188 15 0 chr6 105980798 105981331 -76433911 - L1MB1 LINE L1 -11 6157 5617 4530 193 25 6 chr6 105981332 105982567 -76432675 + L1MB1 LINE L1 4347 5606 -562 717 231 49 67 chr6 105983143 105983532 -76431710 + L1MC5 LINE L1 7544 7925 -36 2363 70 0 16 chr6 105983618 105983931 -76431311 + AluY SINE Alu 1 308 -3 24 0 0 0 chr6 105984005 105984029 -76431213 + AT_rich Low_complexity Low_complexity 1 24 0 2260 89 3 3 chr6 105984301 105984604 -76430638 + AluSq SINE Alu 1 303 -10 690 253 15 35 chr6 105984608 105984806 -76430436 - MER58A DNA MER1_type -30 194 1 2104 127 0 9 chr6 105986750 105987066 -76428176 + AluSq SINE Alu 1 313 0 1173 205 68 0 chr6 105988747 105989010 -76426232 + L1MC5 LINE L1 5304 5584 -2224 326 202 0 12 chr6 105989013 105989097 -76426145 + (TA)n Simple_repeat Simple_repeat 1 83 0 813 262 44 88 chr6 105989098 105989963 -76425279 + L1MC5 LINE L1 5844 6729 -1246 2156 96 0 19 chr6 105989963 105990139 -76425103 - AluY SINE Alu -3 308 139 2099 77 42 3 chr6 105990139 105990424 -76424818 - AluY SINE Alu -15 296 1 2156 96 0 19 chr6 105990424 105990561 -76424681 - AluY SINE Alu -172 139 1 813 262 44 88 chr6 105990561 105991054 -76424188 + L1MC5 LINE L1 6729 7242 -733 247 235 0 0 chr6 105991208 105991259 -76423983 + L1MC5 LINE L1 7308 7358 -603 307 234 145 24 chr6 105991272 105991396 -76423846 - MER106A DNA MER1_type -1 235 97 693 206 74 91 chr6 105991570 105991600 -76423642 + L1MC5 LINE L1 7507 7536 -425 1847 146 0 0 chr6 105991600 105991870 -76423372 + AluSx SINE Alu 1 271 -38 912 45 30 8 chr6 105991870 105992003 -76423239 + (GAAA)n Simple_repeat Simple_repeat 4 139 0 693 206 74 91 chr6 105992006 105992393 -76422849 + L1MC5 LINE L1 7536 7917 -44 9321 201 29 4 chr6 105992395 105994829 -76420413 + L1PA16 LINE L1 3001 5521 -645 2740 13 0 10 chr6 105994829 105995135 -76420107 + AluY SINE Alu 1 303 -8 9321 201 29 4 chr6 105995135 105995797 -76419445 + L1PA16 LINE L1 5521 6165 -1 2125 115 3 0 chr6 105995849 105996144 -76419098 + AluSx SINE Alu 3 298 -14 2358 102 0 0 chr6 105997290 105997593 -76417649 - AluSx SINE Alu -9 303 1 796 244 28 16 chr6 105998431 105998685 -76416557 - L1MB3 LINE L1 -891 5255 4999 * 4427 191 29 2 chr6 105998680 105999586 -76415656 + L1MB3 LINE L1 5254 6183 0 354 275 55 9 chr6 106000455 106000564 -76414678 + MIR SINE MIR 30 143 -65 278 288 138 31 chr6 106001216 106001376 -76413866 + MER5B DNA MER1_type 1 177 -1 365 299 22 54 chr6 106001380 106001564 -76413678 + MER5B DNA MER1_type 1 178 0 1587 169 57 38 chr6 106002291 106002659 -76412583 - THE1C LTR MaLR 0 375 1 9319 137 20 35 chr6 106002659 106004260 -76410982 - THE1C-int LTR MaLR 0 1580 4 229 226 16 16 chr6 106004263 106004325 -76410917 - THE1C LTR MaLR 0 364 303 1226 111 81 5 chr6 106004665 106004863 -76410379 - THE1C-int LTR MaLR -1364 216 4 1252 167 68 121 chr6 106004866 106004956 -76410286 - THE1C LTR MaLR 0 375 282 8832 58 20 1 chr6 106004956 106006891 -76408351 - L1PA6 LINE L1 -11 6143 4185 1252 167 68 121 chr6 106006891 106007196 -76408046 - THE1C LTR MaLR -93 282 1 201 260 60 0 chr6 106008244 106008294 -76406948 - MIR3 SINE MIR 0 208 156 207 167 0 0 chr6 106008321 106008363 -76406879 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1931 150 27 54 chr6 106008724 106009097 -76406145 - MER47A DNA MER2_type -1 365 3 406 258 42 78 chr6 106009267 106009484 -76405758 + HAL1b LINE L1 333 541 -807 23 33 0 0 chr6 106009562 106009592 -76405650 + AT_rich Low_complexity Low_complexity 1 30 0 982 338 146 20 chr6 106010625 106011452 -76403790 + L2 LINE L2 2332 3271 -1 1669 138 39 3 chr6 106011743 106012157 -76403085 + AluSx SINE Alu 1 424 0 365 342 116 47 chr6 106012633 106013205 -76402037 - L2 LINE L2 0 3272 2657 22 0 0 0 chr6 106013268 106013290 -76401952 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 106014451 106014488 -76400754 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 106014503 106014531 -76400711 + AT_rich Low_complexity Low_complexity 1 28 0 2961 3 0 0 chr6 106014533 106014851 -76400391 + AluYb8 SINE Alu 1 318 0 442 326 13 64 chr6 106014873 106015109 -76400133 - MIR SINE MIR -11 251 28 4299 171 24 13 chr6 106015167 106015987 -76399255 + L1MB1 LINE L1 5339 6167 -1 204 211 14 28 chr6 106016013 106016084 -76399158 + (TAA)n Simple_repeat Simple_repeat 2 71 0 22 35 0 0 chr6 106016184 106016213 -76399029 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr6 106016882 106016906 -76398336 + (TA)n Simple_repeat Simple_repeat 1 24 0 2824 7 0 0 chr6 106016907 106017213 -76398029 - AluYb8 SINE Alu -12 306 1 1724 143 43 18 chr6 106017223 106017380 -76397862 - AluSg SINE Alu -23 287 118 302 0 0 26 chr6 106017380 106017419 -76397823 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1724 143 43 18 chr6 106017419 106017541 -76397701 - AluSg SINE Alu -192 118 1 207 0 0 0 chr6 106017632 106017655 -76397587 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 414 353 48 34 chr6 106017995 106018346 -76396896 - L3 LINE CR1 -42 1535 1180 497 225 139 5 chr6 106018587 106018796 -76396446 + MER113 DNA MER1_type? 6 242 -279 1703 272 93 64 chr6 106019184 106019284 -76395958 + HAL1 LINE L1 12 108 -2399 1440 139 78 37 chr6 106019284 106019578 -76395664 + AluJb SINE Alu 1 306 -6 1703 272 93 64 chr6 106019578 106020168 -76395074 + HAL1 LINE L1 108 722 -1785 235 213 0 21 chr6 106020254 106020301 -76394941 - HAL1 LINE L1 -2041 466 421 303 336 157 7 chr6 106020354 106020494 -76394748 + HAL1 LINE L1 758 918 -1589 428 365 85 60 chr6 106021134 106021890 -76393352 - L3 LINE CR1 -754 823 49 299 226 0 0 chr6 106022502 106022564 -76392678 - L2 LINE L2 -217 3055 2994 4573 162 45 28 chr6 106024337 106025252 -76389990 - L1MA8 LINE L1 0 6291 5362 1426 249 211 26 chr6 106025464 106025966 -76389276 + MLT1G1 LTR MaLR 1 595 0 2060 171 42 40 chr6 106028661 106029213 -76386029 + MLT2A2 LTR ERVL 3 554 0 348 280 66 86 chr6 106029441 106029698 -76385544 + L1ME LINE L1 5336 5587 -577 191 219 10 94 chr6 106029859 106029955 -76385287 + MER5C DNA MER1_type 33 120 -204 1893 136 94 9 chr6 106030896 106031235 -76384007 + THE1C LTR MaLR 1 368 -7 333 288 22 14 chr6 106031534 106031673 -76383569 + L1MEd LINE L1 19 158 -5961 378 0 0 0 chr6 106031755 106031797 -76383445 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1353 140 0 0 chr6 106031801 106032001 -76383241 - L1PB3 LINE L1 -15 6139 5940 36 23 0 0 chr6 106032664 106032707 -76382535 + AT_rich Low_complexity Low_complexity 1 43 0 28 0 0 0 chr6 106032880 106032908 -76382334 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 106032939 106032960 -76382282 + AT_rich Low_complexity Low_complexity 1 21 0 259 359 13 44 chr6 106033253 106033412 -76381830 + L3 LINE CR1 1060 1213 -364 181 362 0 0 chr6 106035050 106035097 -76380145 - L2 LINE L2 -18 3254 3208 1856 175 29 8 chr6 106035175 106035550 -76379692 - MLT1A1 LTR MaLR 0 365 1 25 0 0 0 chr6 106036127 106036152 -76379090 + AT_rich Low_complexity Low_complexity 1 25 0 326 306 83 57 chr6 106036153 106036346 -76378896 - MIR SINE MIR -57 205 8 512 231 56 19 chr6 106036924 106037084 -76378158 + MIR SINE MIR 49 214 -48 2128 121 7 0 chr6 106037476 106037773 -76377469 + AluSg SINE Alu 1 299 -11 31 0 0 0 chr6 106037773 106037804 -76377438 + AT_rich Low_complexity Low_complexity 1 31 0 780 59 0 0 chr6 106038674 106038776 -76376466 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 566 172 94 0 chr6 106038939 106039067 -76376175 - L1PB4 LINE L1 0 6156 6017 1228 202 15 110 chr6 106039618 106040019 -76375223 - MLT1A1 LTR MaLR -2 363 1 360 359 66 6 chr6 106040053 106040220 -76375022 + MIR SINE MIR 24 200 -62 356 224 112 93 chr6 106040223 106040489 -76374753 - MER96B DNA MER1_type? -7 410 140 875 195 136 172 chr6 106040489 106041011 -76374231 + MLT1E2 LTR MaLR 1 503 -2 2003 112 32 0 chr6 106041041 106041318 -76373924 - AluY SINE Alu -20 291 6 243 119 0 0 chr6 106041338 106041380 -76373862 - MER96B DNA MER1_type? -237 180 139 300 168 8 64 chr6 106041380 106041497 -76373745 + MLT1E1 LTR MaLR 1 151 -503 405 223 19 0 chr6 106041532 106041635 -76373607 - MER96B DNA MER1_type? -305 112 8 328 261 45 54 chr6 106044765 106044876 -76370366 - MIR3 SINE MIR -30 178 69 23 0 0 0 chr6 106045109 106045132 -76370110 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr6 106046743 106046773 -76368469 + AT_rich Low_complexity Low_complexity 1 30 0 291 267 44 96 chr6 106047734 106047869 -76367373 + L2 LINE L2 3181 3308 -5 260 301 176 7 chr6 106047991 106048127 -76367115 + MIR3 SINE MIR 43 201 -7 266 291 238 17 chr6 106048196 106048368 -76366874 - MIR SINE MIR -2 260 51 2478 181 74 12 chr6 106049293 106049778 -76365464 + MLT2B2 LTR ERVL 1 515 0 213 176 0 0 chr6 106050273 106050307 -76364935 + L3 LINE CR1 1541 1574 -3 264 158 0 0 chr6 106051664 106051721 -76363521 + CT-rich Low_complexity Low_complexity 1 57 0 234 0 0 0 chr6 106053492 106053518 -76361724 + (TG)n Simple_repeat Simple_repeat 1 26 0 193 351 16 63 chr6 106053518 106053704 -76361538 + L2 LINE L2 2191 2367 -947 2049 152 44 0 chr6 106053706 106054049 -76361193 - MER47A DNA MER2_type -7 359 2 244 353 10 20 chr6 106054194 106054296 -76360946 - MIR SINE MIR -113 149 49 26 0 0 0 chr6 106055118 106055144 -76360098 + AT_rich Low_complexity Low_complexity 1 26 0 32 57 0 0 chr6 106055524 106055577 -76359665 + AT_rich Low_complexity Low_complexity 1 53 0 25 0 0 0 chr6 106057568 106057593 -76357649 + AT_rich Low_complexity Low_complexity 1 25 0 1296 215 26 8 chr6 106059219 106059484 -76355758 - MER93b LTR ERV1 0 373 104 378 0 0 0 chr6 106059487 106059529 -76355713 + (TG)n Simple_repeat Simple_repeat 2 43 0 349 284 14 14 chr6 106059877 106060028 -76355214 - MER51-int LTR ERV1 -590 7129 6797 5646 158 24 19 chr6 106060200 106061682 -76353560 + L1MA4 LINE L1 4767 6249 -51 2140 132 7 16 chr6 106061682 106061992 -76353250 + AluSq SINE Alu 1 307 -6 5646 158 24 19 chr6 106061992 106062044 -76353198 + L1MA4 LINE L1 6249 6299 -1 294 343 222 23 chr6 106062074 106062290 -76352952 - MIR SINE MIR 0 262 4 284 364 66 0 chr6 106062497 106062618 -76352624 + L2 LINE L2 3142 3270 -2 350 306 126 19 chr6 106062672 106062878 -76352364 + MIR SINE MIR 1 228 -34 201 74 0 0 chr6 106064961 106064988 -76350254 + (TC)n Simple_repeat Simple_repeat 2 28 0 1577 126 4 0 chr6 106064997 106065227 -76350015 - AluSp SINE Alu 0 313 83 183 100 0 0 chr6 106065347 106065377 -76349865 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1344 204 32 32 chr6 106065380 106065660 -76349582 - AluJo SINE Alu -30 282 3 436 303 27 38 chr6 106065762 106065947 -76349295 + MIR SINE MIR 5 187 -75 185 128 0 26 chr6 106067042 106067081 -76348161 + (GA)n Simple_repeat Simple_repeat 2 39 0 297 0 0 0 chr6 106067440 106067473 -76347769 + (TG)n Simple_repeat Simple_repeat 2 34 0 198 103 0 0 chr6 106067822 106067851 -76347391 + (TC)n Simple_repeat Simple_repeat 2 30 0 346 353 71 29 chr6 106069959 106070197 -76345045 - MIR SINE MIR 0 262 15 597 195 149 45 chr6 106072302 106072456 -76342786 + MER5A DNA MER1_type 14 183 -6 295 309 126 43 chr6 106072662 106073016 -76342226 - L2 LINE L2 -209 3063 2667 465 110 0 0 chr6 106073141 106073214 -76342028 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 340 254 145 58 chr6 106073259 106073484 -76341758 - MLT1G3 LTR MaLR -308 236 6 5894 166 13 8 chr6 106073487 106075564 -76339678 - L1PA16 LINE L1 -1 6165 4077 264 193 0 35 chr6 106075565 106075622 -76339620 - MLT1H1 LTR MaLR -500 55 1 257 274 132 0 chr6 106075900 106076006 -76339236 + LTR67 LTR ERVL 438 557 0 531 343 101 20 chr6 106076006 106076403 -76338839 - L2 LINE L2 -699 2615 2187 807 274 72 96 chr6 106077460 106077990 -76337252 - MLT1G LTR MaLR -31 536 16 1318 210 82 12 chr6 106077991 106078310 -76336932 + MER2 DNA MER2_type 2 342 -2 401 266 73 0 chr6 106078562 106078671 -76336571 + L2 LINE L2 2186 2302 -1012 2373 114 5 46 chr6 106078712 106079062 -76336180 - L1PA13 LINE L1 -2 6161 5829 2415 76 3 0 chr6 106079062 106079363 -76335879 - AluY SINE Alu -9 302 1 2373 114 5 46 chr6 106079363 106079423 -76335819 - L1PA13 LINE L1 -334 5829 5768 850 217 39 0 chr6 106079505 106079685 -76335557 + MER5A DNA MER1_type 3 189 0 835 253 65 27 chr6 106080000 106080261 -76334981 + L2 LINE L2 2516 2786 -528 5082 153 29 19 chr6 106080261 106081286 -76333956 - L1PA16 LINE L1 0 6166 5128 213 252 87 29 chr6 106081296 106081399 -76333843 + L2 LINE L2 2796 2904 -410 23 54 0 0 chr6 106082282 106082319 -76332923 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr6 106082498 106082527 -76332715 + AT_rich Low_complexity Low_complexity 1 29 0 208 318 75 52 chr6 106082527 106082700 -76332542 - L2 LINE L2 -115 3157 2981 180 200 0 0 chr6 106083199 106083244 -76331998 + (CA)n Simple_repeat Simple_repeat 2 46 0 28 0 0 0 chr6 106083327 106083355 -76331887 + AT_rich Low_complexity Low_complexity 1 28 0 309 100 0 0 chr6 106083384 106083434 -76331808 + (CA)n Simple_repeat Simple_repeat 2 51 0 1661 194 3 7 chr6 106083466 106083765 -76331477 + AluJo SINE Alu 1 298 -14 255 61 0 0 chr6 106084040 106084073 -76331169 + (CA)n Simple_repeat Simple_repeat 1 33 0 2144 182 65 109 chr6 106088217 106088897 -76326345 + MLT1E1 LTR MaLR 1 650 -4 2648 98 15 20 chr6 106089418 106089826 -76325416 - L1PA13 LINE L1 0 6163 5758 24 53 0 0 chr6 106091284 106091322 -76323920 + AT_rich Low_complexity Low_complexity 1 38 0 280 333 68 8 chr6 106091739 106091856 -76323386 + MIR SINE MIR 17 140 -68 2187 265 102 52 chr6 106092870 106093113 -76322129 + L2 LINE L2 2081 2311 -1002 2069 139 20 0 chr6 106093113 106093415 -76321827 + AluSx SINE Alu 2 309 -3 2187 265 102 52 chr6 106093415 106094232 -76321010 + L2 LINE L2 2311 3195 -118 509 261 244 22 chr6 106094232 106094412 -76320830 + MER58A DNA MER1_type 5 224 0 2187 265 102 52 chr6 106094412 106094538 -76320704 + L2 LINE L2 3195 3313 0 309 294 44 59 chr6 106097577 106097713 -76317529 - L2 LINE L2 -5 3308 3175 189 0 0 0 chr6 106098220 106098241 -76317001 + (TA)n Simple_repeat Simple_repeat 1 21 0 221 53 53 0 chr6 106098641 106098679 -76316563 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2466 104 3 8 chr6 106098679 106099044 -76316198 - L1PB1 LINE L1 -7 6144 5782 549 80 0 0 chr6 106099056 106099131 -76316111 + (TG)n Simple_repeat Simple_repeat 2 76 0 8189 158 17 10 chr6 106099140 106101234 -76314008 - L1PB1 LINE L1 -360 5791 3689 382 208 13 0 chr6 106101406 106101483 -76313759 - MER116 DNA Mariner -2 78 1 486 207 227 13 chr6 106101565 106101715 -76313527 - MER5A DNA MER1_type -2 187 6 738 305 70 29 chr6 106101778 106102234 -76313008 + L1ME LINE L1 5280 5754 -367 708 239 81 32 chr6 106102597 106102907 -76312335 + L1ME4a LINE L1 5623 5947 -174 281 343 47 70 chr6 106104066 106104279 -76310963 + L2 LINE L2 2841 3048 -224 1726 189 22 8 chr6 106104801 106105161 -76310081 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr6 106105759 106105782 -76309460 + AT_rich Low_complexity Low_complexity 1 23 0 228 67 0 0 chr6 106106761 106106791 -76308451 + (TC)n Simple_repeat Simple_repeat 1 30 0 303 140 0 0 chr6 106106794 106106844 -76308398 + (TA)n Simple_repeat Simple_repeat 2 51 0 331 360 11 81 chr6 106108083 106108269 -76306973 - MIR3 SINE MIR -1 207 35 1108 228 114 9 chr6 106108276 106108610 -76306632 + MLT1B LTR MaLR 5 373 -17 398 52 0 17 chr6 106109134 106109192 -76306050 + (GA)n Simple_repeat Simple_repeat 2 58 0 278 366 52 0 chr6 106109991 106110125 -76305117 - MIR SINE MIR -5 257 117 351 292 153 15 chr6 106110214 106110351 -76304891 - MIR SINE MIR -50 212 57 216 282 0 13 chr6 106111064 106111142 -76304100 + (TA)n Simple_repeat Simple_repeat 2 78 0 311 300 53 97 chr6 106111878 106112105 -76303137 + LTR16C LTR ERVL 159 375 -116 858 143 17 69 chr6 106112124 106112299 -76302943 + MER20 DNA MER1_type 6 171 -48 1574 166 14 7 chr6 106113308 106113603 -76301639 + L1MA9 LINE L1 6005 6301 -11 213 65 0 0 chr6 106115270 106115301 -76299941 + (CA)n Simple_repeat Simple_repeat 2 32 0 810 312 45 26 chr6 106116007 106116318 -76298924 + MLT1I LTR MaLR 91 407 -2 198 313 62 21 chr6 106116731 106116827 -76298415 - MIR SINE MIR -35 227 128 468 319 81 34 chr6 106118036 106118331 -76296911 - L2 LINE L2 -7 3306 2998 225 196 0 22 chr6 106118399 106118445 -76296797 + CT-rich Low_complexity Low_complexity 3 47 0 437 310 107 0 chr6 106119059 106119246 -76295996 + MIR SINE MIR 41 247 -15 24 32 0 0 chr6 106119797 106119828 -76295414 + AT_rich Low_complexity Low_complexity 1 31 0 252 237 158 86 chr6 106119828 106119967 -76295275 + L2 LINE L2 3161 3309 -4 183 186 0 0 chr6 106119969 106120012 -76295230 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 531 304 114 35 chr6 106120252 106120568 -76294674 - L3 LINE CR1 -28 1549 1209 1638 179 34 0 chr6 106120638 106120934 -76294308 + AluJb SINE Alu 1 306 -6 319 235 189 8 chr6 106121000 106121132 -76294110 - MIR SINE MIR -59 203 48 21 0 0 0 chr6 106121622 106121643 -76293599 + AT_rich Low_complexity Low_complexity 1 21 0 193 216 0 0 chr6 106122065 106122102 -76293140 - L2 LINE L2 -10 3262 3226 201 263 53 0 chr6 106122257 106122314 -76292928 - L2 LINE L2 -66 3247 3188 344 290 197 21 chr6 106122365 106122558 -76292684 + MIR SINE MIR 27 253 -9 424 351 15 8 chr6 106122558 106122692 -76292550 - MIR SINE MIR -124 138 4 2360 14 0 14 chr6 106122884 106123168 -76292074 + L1PA4 LINE L1 5876 6155 0 684 179 0 40 chr6 106123446 106123601 -76291641 + MIR SINE MIR 102 249 -13 247 175 53 35 chr6 106123608 106123665 -76291577 + MIR SINE MIR 89 146 -116 285 370 0 0 chr6 106124159 106124240 -76291002 + L2 LINE L2 3185 3265 -7 21 0 0 0 chr6 106124322 106124343 -76290899 + AT_rich Low_complexity Low_complexity 1 21 0 185 424 0 46 chr6 106124582 106124778 -76290464 - L3 LINE CR1 -1360 217 31 307 332 59 20 chr6 106126010 106126212 -76289030 + MIR SINE MIR 20 229 -33 210 37 0 0 chr6 106126944 106126971 -76288271 + (TC)n Simple_repeat Simple_repeat 2 28 0 300 246 68 68 chr6 106126986 106127104 -76288138 - L1MC4 LINE L1 -1339 6703 6586 545 350 31 5 chr6 106127235 106127429 -76287813 - MIR SINE MIR -50 212 14 518 302 131 5 chr6 106127912 106128134 -76287108 - MIR SINE MIR -2 260 11 225 108 0 0 chr6 106130064 106130101 -76285141 + (TG)n Simple_repeat Simple_repeat 2 38 0 417 263 122 27 chr6 106130286 106130568 -76284674 + L1ME3 LINE L1 5522 5875 -287 1705 114 71 0 chr6 106130568 106130849 -76284393 - L1PA13 LINE L1 -2 6161 5861 417 263 122 27 chr6 106130849 106130860 -76284382 + L1PA13 LINE L1 5875 5884 -278 459 242 68 0 chr6 106131061 106131193 -76284049 - MLT1G LTR MaLR -19 571 431 323 221 137 30 chr6 106131128 106131259 -76283983 + MLT1G3 LTR MaLR 194 338 -192 * 540 272 68 0 chr6 106131363 106131525 -76283717 + MLT1G1 LTR MaLR 1 173 -422 795 295 89 63 chr6 106131661 106132211 -76283031 - MLT1G1 LTR MaLR 0 590 1 730 270 89 21 chr6 106132549 106132786 -76282456 - MIR SINE MIR 0 262 10 246 259 9 103 chr6 106133468 106133584 -76281658 + L2 LINE L2 3208 3312 -1 270 56 0 0 chr6 106133761 106133797 -76281445 + (TG)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr6 106135653 106135683 -76279559 + AT_rich Low_complexity Low_complexity 1 30 0 531 317 40 18 chr6 106135925 106136152 -76279090 - MIR SINE MIR 0 262 31 23 78 0 0 chr6 106136550 106136601 -76278641 + AT_rich Low_complexity Low_complexity 1 51 0 29 47 0 0 chr6 106136640 106136683 -76278559 + AT_rich Low_complexity Low_complexity 1 43 0 192 254 0 0 chr6 106136912 106136971 -76278271 + CT-rich Low_complexity Low_complexity 2 60 0 353 343 92 46 chr6 106138831 106139158 -76276084 - L2 LINE L2 -5 3308 2967 202 225 0 0 chr6 106139453 106139493 -76275749 - L2 LINE L2 -692 2622 2583 262 377 90 35 chr6 106139519 106140153 -76275089 - L2 LINE L2 -1105 2209 1541 355 313 189 32 chr6 106140163 106140502 -76274740 - L2 LINE L2 -2059 1255 864 388 189 25 74 chr6 106140807 106140929 -76274313 + MER103 DNA DNA 8 123 -43 2217 153 3 6 chr6 106141066 106141432 -76273810 + MLT1A1 LTR MaLR 1 365 0 330 265 48 84 chr6 106143628 106143794 -76271448 + MIR SINE MIR 51 210 -52 23 0 0 0 chr6 106143847 106143870 -76271372 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr6 106144372 106144410 -76270832 + AT_rich Low_complexity Low_complexity 1 38 0 1198 146 26 43 chr6 106145289 106145522 -76269720 + AluJo SINE Alu 84 312 0 24 0 0 0 chr6 106146057 106146081 -76269161 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr6 106146141 106146172 -76269070 + AT_rich Low_complexity Low_complexity 1 31 0 320 322 73 50 chr6 106146404 106146705 -76268537 - L1M4 LINE L1 -3642 2504 2197 2089 116 7 0 chr6 106147041 106147425 -76267817 + AluSx SINE Alu 5 312 0 302 289 82 30 chr6 106147426 106147561 -76267681 - HAL1b LINE L1 -474 874 733 299 332 84 0 chr6 106147564 106147754 -76267488 - HAL1b LINE L1 -666 682 477 346 316 84 7 chr6 106148018 106148173 -76267069 - HAL1b LINE L1 -1150 198 32 23 0 0 0 chr6 106148240 106148263 -76266979 + AT_rich Low_complexity Low_complexity 1 23 0 7495 174 15 22 chr6 106148263 106150587 -76264655 - L1PA13 LINE L1 -7 6156 3847 224 382 27 0 chr6 106151184 106151294 -76263948 + MIR SINE MIR 21 133 -75 26 88 0 0 chr6 106151403 106151471 -76263771 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr6 106152478 106152510 -76262732 + AT_rich Low_complexity Low_complexity 1 32 0 220 200 0 0 chr6 106156055 106156095 -76259147 + CT-rich Low_complexity Low_complexity 4 43 0 22 35 0 0 chr6 106156815 106156844 -76258398 + AT_rich Low_complexity Low_complexity 1 29 0 36 23 0 0 chr6 106156982 106157025 -76258217 + AT_rich Low_complexity Low_complexity 1 43 0 830 216 54 15 chr6 106157112 106157316 -76257926 - MER20 DNA MER1_type -7 212 1 40 67 0 0 chr6 106157570 106157645 -76257597 + AT_rich Low_complexity Low_complexity 1 75 0 261 172 22 52 chr6 106157983 106158117 -76257125 + (TATAA)n Simple_repeat Simple_repeat 5 134 0 181 53 79 26 chr6 106158142 106158180 -76257062 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 384 179 45 50 chr6 106158208 106158387 -76256855 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 25 90 0 0 chr6 106158402 106158469 -76256773 + AT_rich Low_complexity Low_complexity 1 67 0 2165 126 25 3 chr6 106158807 106159171 -76256071 - L1PB3 LINE L1 -1 6153 5782 232 132 38 0 chr6 106159171 106159224 -76256018 + (TTATA)n Simple_repeat Simple_repeat 3 57 0 428 98 79 0 chr6 106159225 106159389 -76255853 + (TA)n Simple_repeat Simple_repeat 2 178 0 3189 165 106 11 chr6 106159399 106160437 -76254805 - L1PB3 LINE L1 -363 5791 4630 12095 35 0 1 chr6 106160825 106163038 -76252204 - L1PA3 LINE L1 -3 6152 3932 24805 39 0 0 chr6 106163038 106166097 -76249145 + L1PA3 LINE L1 873 3931 -2215 25 31 0 0 chr6 106167583 106167615 -76247627 + AT_rich Low_complexity Low_complexity 1 32 0 226 258 0 30 chr6 106167659 106167725 -76247517 + GA-rich Low_complexity Low_complexity 3 66 0 371 276 49 16 chr6 106168156 106168279 -76246963 - MIR SINE MIR -51 211 85 1569 161 4 4 chr6 106168909 106169170 -76246072 - AluSx SINE Alu -6 306 46 500 192 17 0 chr6 106169585 106169705 -76245537 + L1MB7 LINE L1 6048 6169 -15 315 0 0 0 chr6 106169707 106169742 -76245500 + (TA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 106169773 106169793 -76245449 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 377 236 115 18 chr6 106170848 106171013 -76244229 - L1ME4a LINE L1 -214 5907 5727 191 86 0 29 chr6 106171087 106171122 -76244120 + (TATAA)n Simple_repeat Simple_repeat 3 36 0 21 89 0 0 chr6 106171685 106171741 -76243501 + AT_rich Low_complexity Low_complexity 1 56 0 1684 191 26 0 chr6 106172061 106172364 -76242878 + AluSx SINE Alu 1 311 -1 560 194 8 0 chr6 106172364 106172493 -76242749 + GA-rich Low_complexity Low_complexity 1 130 0 253 329 20 13 chr6 106173150 106173299 -76241943 - L1PB3 LINE L1 -1792 4354 4205 267 247 27 0 chr6 106173572 106173645 -76241597 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 330 214 24 0 chr6 106174915 106174999 -76240243 + L1PA12 LINE L1 6083 6168 0 1076 244 286 2 chr6 106175317 106175722 -76239520 - MLT2B1 LTR ERVL 0 520 1 27348 181 36 44 chr6 106175722 106181220 -76234022 - ERVL-B1 LTR ERVL -7 5757 303 1719 208 11 28 chr6 106181226 106181586 -76233656 - MLT1A1 LTR MaLR 0 365 12 927 242 62 10 chr6 106181605 106181882 -76233360 - ERVL-B1 LTR ERVL -5381 273 1 1715 230 46 57 chr6 106181882 106182408 -76232834 - MLT2B1 LTR ERVL 0 520 1 4919 94 66 0 chr6 106182658 106183389 -76231853 - L1PA7 LINE L1 -3053 3093 2315 15705 94 6 2 chr6 106183392 106186427 -76228815 + L1PA7 LINE L1 3093 6151 -3 22 0 0 0 chr6 106186608 106186630 -76228612 + AT_rich Low_complexity Low_complexity 1 22 0 254 337 30 11 chr6 106186665 106186794 -76228448 - MIR SINE MIR -14 194 59 31 0 0 0 chr6 106186836 106186867 -76228375 + AT_rich Low_complexity Low_complexity 1 31 0 42735 34 21 1 chr6 106187937 106193993 -76221249 + L1PA2 LINE L1 5 6184 0 6957 57 39 0 chr6 106194795 106196051 -76219191 - L1PA7 LINE L1 -11 6143 4867 1816 189 37 6 chr6 106196344 106196698 -76218544 + MLT1A1 LTR MaLR 1 365 0 1188 231 21 0 chr6 106197189 106197427 -76217815 + MIR SINE MIR 18 260 -2 21 0 0 0 chr6 106198626 106198647 -76216595 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr6 106200131 106200155 -76215087 + (TA)n Simple_repeat Simple_repeat 2 25 0 2089 146 0 0 chr6 106200689 106200998 -76214244 + AluSx SINE Alu 1 309 -3 243 88 0 0 chr6 106200998 106201032 -76214210 + (TA)n Simple_repeat Simple_repeat 2 35 0 1250 222 8 8 chr6 106201227 106201475 -76213767 + MLT1A1 LTR MaLR 17 264 -101 1384 252 0 0 chr6 106201745 106202054 -76213188 + AluSx SINE Alu 1 309 -3 243 88 0 0 chr6 106202054 106202088 -76213154 + (TA)n Simple_repeat Simple_repeat 2 35 0 1853 177 18 21 chr6 106202298 106202631 -76212611 + MLT1A1 LTR MaLR 34 365 0 260 256 91 40 chr6 106203363 106203562 -76211680 + L1ME4a LINE L1 5741 5949 -172 195 42 0 0 chr6 106203610 106203634 -76211608 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 378 343 218 20 chr6 106203750 106204465 -76210777 - L2 LINE L2 -389 2925 2069 308 419 6 6 chr6 106204519 106204679 -76210563 + L3 LINE CR1 1380 1539 -38 419 307 173 11 chr6 106205133 106205312 -76209930 - MLT1J2 LTR MaLR -2 448 241 251 255 75 64 chr6 106205431 106205525 -76209717 - LTR16C LTR ERVL -260 231 137 719 286 140 18 chr6 106205676 106206012 -76209230 - MLT1J2 LTR MaLR -10 440 64 180 77 0 0 chr6 106207150 106207176 -76208066 + (CAA)n Simple_repeat Simple_repeat 3 28 0 1858 244 70 119 chr6 106207186 106208186 -76207056 + L1MCb LINE L1 64 1014 -5031 640 161 31 23 chr6 106208188 106208318 -76206924 + L1MA2 LINE L1 14 144 -7421 * 6748 141 12 15 chr6 106208313 106209503 -76205739 + L1MA2 LINE L1 5724 6907 -816 2751 82 3 0 chr6 106209503 106209857 -76205385 - THE1A LTR MaLR 0 355 1 6748 141 12 15 chr6 106209857 106210672 -76204570 + L1MA2 LINE L1 6907 7723 0 705 181 3 8 chr6 106210686 106210864 -76204378 + L1MCb LINE L1 1004 1180 -4891 4541 142 14 27 chr6 106210865 106211641 -76203601 - Tigger1 DNA MER2_type 0 2418 1653 1531 194 13 3 chr6 106211753 106212052 -76203190 - Tigger1 DNA MER2_type -2116 302 1 1339 243 84 36 chr6 106212052 106212880 -76202362 + L1MCb LINE L1 1180 2141 -4423 303 250 65 0 chr6 106212904 106212996 -76202246 + L1MCb LINE L1 2227 2324 -4240 * 1194 196 36 60 chr6 106212994 106213326 -76201916 + L1MC2 LINE L1 6010 6333 -11 296 225 75 0 chr6 106213327 106213407 -76201835 + L1M4 LINE L1 3951 4036 -2110 * 2612 196 41 21 chr6 106213406 106214273 -76200969 + L1MC3 LINE L1 6823 7785 0 928 212 6 0 chr6 106214820 106214999 -76200243 - AluJb SINE Alu -4 308 129 607 118 29 22 chr6 106215004 106215140 -76200102 + CT-rich Low_complexity Low_complexity 2 138 0 692 168 8 24 chr6 106215140 106215265 -76199977 - AluJb SINE Alu -187 125 3 22 0 0 0 chr6 106215267 106215289 -76199953 + AT_rich Low_complexity Low_complexity 1 22 0 777 303 113 6 chr6 106215697 106216024 -76199218 + L2 LINE L2 1010 1371 -1943 2952 258 29 62 chr6 106216647 106216901 -76198341 + L2 LINE L2 1364 1625 -1689 1653 127 53 32 chr6 106216901 106217239 -76198003 - L1MA8 LINE L1 -4 6287 5943 2952 258 29 62 chr6 106217239 106217989 -76197253 + L2 LINE L2 1625 2335 -979 3136 83 23 4 chr6 106218008 106218423 -76196819 + MLT2A1 LTR ERVL 1 480 -40 259 193 0 0 chr6 106218425 106218482 -76196760 + L1MC4 LINE L1 6648 6704 -1338 386 77 0 0 chr6 106218485 106218537 -76196705 + MLT2A1 LTR ERVL 393 444 0 1225 181 46 13 chr6 106218776 106218861 -76196381 + AluJb SINE Alu 39 120 -192 896 100 25 6 chr6 106218861 106219021 -76196221 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 1225 181 46 13 chr6 106219021 106219173 -76196069 + AluJb SINE Alu 120 284 -28 1339 275 97 61 chr6 106219366 106220294 -76194948 + L2 LINE L2 2355 3311 -2 544 269 78 10 chr6 106220294 106220588 -76194654 - HAL1 LINE L1 -1219 1288 975 304 245 21 112 chr6 106220670 106220858 -76194384 + L1ME4a LINE L1 5947 6117 -4 196 271 0 0 chr6 106221701 106221749 -76193493 + L2 LINE L2 3253 3300 -13 242 316 95 0 chr6 106221765 106221860 -76193382 - MIR SINE MIR -55 153 50 3270 229 56 16 chr6 106222064 106223139 -76192103 - L1ME1 LINE L1 -5 6161 5049 1162 140 0 0 chr6 106223139 106223303 -76191939 - AluSg/x SINE Alu -12 298 135 1037 231 43 7 chr6 106223303 106223606 -76191636 - L1ME1 LINE L1 -1090 5056 4743 1452 201 45 0 chr6 106224065 106224213 -76191029 - AluJo SINE Alu -30 282 115 216 0 0 0 chr6 106224213 106224237 -76191005 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1452 201 45 0 chr6 106224237 106224356 -76190886 - AluJo SINE Alu -197 115 3 248 241 56 0 chr6 106224555 106224609 -76190633 - MIR SINE MIR -72 190 134 300 111 0 0 chr6 106225865 106225910 -76189332 + (CA)n Simple_repeat Simple_repeat 2 46 0 312 224 0 0 chr6 106229215 106229264 -76185978 + (TG)n Simple_repeat Simple_repeat 2 53 -33 2143 190 14 25 chr6 106229264 106229701 -76185541 + Tigger2a DNA MER2_type 3 434 0 312 224 0 0 chr6 106229701 106229736 -76185506 + (TG)n Simple_repeat Simple_repeat 52 86 0 213 241 0 26 chr6 106229735 106229851 -76185391 + (TA)n Simple_repeat Simple_repeat 2 114 0 * 228 67 0 0 chr6 106230076 106230106 -76185136 + (A)n Simple_repeat Simple_repeat 1 30 0 1326 216 113 44 chr6 106230620 106231028 -76184214 + MER63B DNA MER1_type 1 436 0 2448 96 0 0 chr6 106233048 106233360 -76181882 + AluSq SINE Alu 1 312 -1 236 242 0 61 chr6 106233456 106233522 -76181720 - MIR SINE MIR -2 260 199 216 184 0 0 chr6 106235426 106235475 -76179767 + T-rich Low_complexity Low_complexity 1 49 0 359 310 121 11 chr6 106238117 106238291 -76176951 - MIR3 SINE MIR 0 208 16 230 321 49 0 chr6 106238261 106238342 -76176900 + L2 LINE L2 3229 3313 0 * 276 309 107 0 chr6 106238667 106238802 -76176440 - MIR SINE MIR -68 140 31 21 57 0 0 chr6 106239435 106239470 -76175772 + AT_rich Low_complexity Low_complexity 1 35 0 283 336 52 24 chr6 106239754 106239965 -76175277 - L2 LINE L2 -1291 2023 1807 317 221 136 21 chr6 106240043 106240183 -76175059 - L1ME4a LINE L1 -5 6116 5961 196 378 0 0 chr6 106240574 106240656 -76174586 - L2 LINE L2 -2065 1249 1168 973 37 15 15 chr6 106241174 106241308 -76173934 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 338 267 28 30 chr6 106243046 106243167 -76172075 + MIR SINE MIR 70 191 -63 390 240 21 10 chr6 106243194 106243290 -76171952 + L1MA6 LINE L1 11 107 -5848 * 9302 233 52 27 chr6 106243283 106245383 -76169859 + L1MA6 LINE L1 316 2362 -3826 2261 110 3 0 chr6 106245383 106245683 -76169559 + AluSp SINE Alu 1 301 -12 9302 233 52 27 chr6 106245683 106249564 -76165678 + L1MA6 LINE L1 2362 6179 -9 3521 107 0 2 chr6 106249664 106250160 -76165082 + LOR1a LTR ERV1 1 495 -2 21 36 0 0 chr6 106250491 106250519 -76164723 + AT_rich Low_complexity Low_complexity 1 28 0 1495 275 129 17 chr6 106251961 106252540 -76162702 - L2 LINE L2 -520 2794 2151 537 338 98 43 chr6 106252602 106253203 -76162039 - L2 LINE L2 -466 2848 2215 8032 48 4 6 chr6 106253224 106254992 -76160250 + L1PA5 LINE L1 4368 6137 -17 315 0 0 0 chr6 106254992 106255027 -76160215 + (TA)n Simple_repeat Simple_repeat 1 35 0 8032 48 4 6 chr6 106255027 106255045 -76160197 + L1PA5 LINE L1 6137 6154 0 191 308 19 0 chr6 106255684 106255736 -76159506 - L2 LINE L2 -10 3303 3251 182 288 34 34 chr6 106259211 106259270 -76155972 - L3 LINE CR1 -1101 476 418 21 36 0 0 chr6 106259808 106259836 -76155406 + AT_rich Low_complexity Low_complexity 1 28 0 462 268 84 16 chr6 106260489 106260679 -76154563 - MIR SINE MIR -3 259 57 240 335 25 63 chr6 106260735 106260893 -76154349 - MIR3 SINE MIR -26 182 31 4386 166 55 35 chr6 106260968 106261515 -76153727 - L1MB1 LINE L1 -2 6166 5576 207 0 0 0 chr6 106261515 106261538 -76153704 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4386 166 55 35 chr6 106261538 106262003 -76153239 - L1MB1 LINE L1 -592 5576 5122 272 254 0 0 chr6 106262212 106262275 -76152967 + LTR50 LTR ERVL 1 63 -732 451 312 16 103 chr6 106262364 106262617 -76152625 - L2 LINE L2 -32 3240 3010 35 0 0 0 chr6 106263031 106263066 -76152176 + AT_rich Low_complexity Low_complexity 1 35 0 305 215 11 0 chr6 106263154 106263247 -76151995 + (TA)n Simple_repeat Simple_repeat 1 94 0 360 243 230 47 chr6 106263653 106263801 -76151441 + MER5B DNA MER1_type 2 176 -2 266 275 8 67 chr6 106264455 106264575 -76150667 + MIR3 SINE MIR 75 187 -21 1782 247 26 6 chr6 106264696 106265227 -76150015 + L1ME LINE L1 4203 4744 -1402 1631 231 65 69 chr6 106265227 106265794 -76149448 + MLT1F1 LTR MaLR 1 565 -2 1524 246 59 40 chr6 106265809 106265971 -76149271 + L1ME LINE L1 4752 4909 -1255 243 0 0 0 chr6 106265971 106265998 -76149244 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1524 246 59 40 chr6 106265998 106266671 -76148571 + L1ME LINE L1 4909 5593 -571 260 341 30 30 chr6 106266705 106266869 -76148373 + L1ME4a LINE L1 5435 5598 -2210 242 292 0 69 chr6 106267083 106267155 -76148087 - MER2 DNA MER2_type -8 337 271 664 119 0 0 chr6 106267181 106267290 -76147952 - MER2 DNA MER2_type -135 210 102 252 266 51 0 chr6 106267291 106267370 -76147872 + MIR SINE MIR 67 149 -113 543 96 0 0 chr6 106267390 106267473 -76147769 + L1MA3 LINE L1 6223 6305 0 1155 203 5 0 chr6 106267498 106267700 -76147542 + Tigger7 DNA MER2_type 65 267 -2220 626 137 21 0 chr6 106267698 106267793 -76147449 + Tigger7 DNA MER2_type 2393 2489 -2 * 1884 271 68 21 chr6 106267794 106268620 -76146622 + L1M4 LINE L1 3023 3887 -2259 336 265 60 13 chr6 106268648 106268799 -76146443 + L1ME4a LINE L1 5955 6112 -9 210 182 0 23 chr6 106269303 106269347 -76145895 + CT-rich Low_complexity Low_complexity 2 44 0 2052 133 3 3 chr6 106269622 106269930 -76145312 - AluSx SINE Alu -1 311 4 351 298 8 24 chr6 106272356 106272480 -76142762 - L2 LINE L2 0 3313 3192 303 304 107 9 chr6 106272581 106272693 -76142549 + MIR SINE MIR 31 153 -55 664 170 7 68 chr6 106273724 106273871 -76141371 + L2 LINE L2 3176 3313 0 467 131 19 28 chr6 106275782 106275889 -76139353 + CT-rich Low_complexity Low_complexity 2 107 0 23 0 0 0 chr6 106279151 106279174 -76136068 + AT_rich Low_complexity Low_complexity 1 23 0 2638 35 0 16 chr6 106279556 106279869 -76135373 - AluY SINE Alu -3 308 1 24 32 0 0 chr6 106280250 106280281 -76134961 + AT_rich Low_complexity Low_complexity 1 31 0 1272 157 55 77 chr6 106281386 106281482 -76133760 - MER33 DNA MER1_type -2267 318 221 1768 185 45 13 chr6 106281482 106281860 -76133382 - MLT1B LTR MaLR 0 390 1 1272 157 55 77 chr6 106281860 106282088 -76133154 - MER33 DNA MER1_type -2364 221 1 340 307 11 0 chr6 106283508 106283596 -76131646 - L2 LINE L2 0 3313 3225 3349 132 8 0 chr6 106283596 106284080 -76131162 + MER1A DNA MER1_type 42 529 0 432 317 66 33 chr6 106284182 106284365 -76130877 - L2 LINE L2 -277 3036 2848 * 582 263 112 11 chr6 106284358 106284537 -76130705 - L2 LINE L2 -640 2674 2478 493 307 67 0 chr6 106285157 106285336 -76129906 - MIR SINE MIR -23 239 49 455 238 0 9 chr6 106285822 106285927 -76129315 + L1PA16 LINE L1 6054 6157 -9 226 265 15 0 chr6 106288344 106288412 -76126830 + (TA)n Simple_repeat Simple_repeat 1 69 0 183 80 0 0 chr6 106289298 106289323 -76125919 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr6 106289763 106289788 -76125454 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr6 106292361 106292383 -76122859 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 16776 51 2 1 chr6 106292752 106294882 -76120360 - L1PA5 LINE L1 -944 5202 3070 7286 40 1 0 chr6 106294883 106295834 -76119408 + L1PA5 LINE L1 5219 6170 0 381 252 105 7 chr6 106296009 106296152 -76119090 + MER103 DNA DNA 3 159 -7 604 296 91 17 chr6 106296717 106296947 -76118295 - MIR SINE MIR -12 250 4 237 98 0 0 chr6 106298113 106298154 -76117088 - MADE1 DNA Mariner -1 79 39 3014 220 21 3 chr6 106299847 106300457 -76114785 - MLT1E3 LTR MaLR -1 623 3 21 0 0 0 chr6 106301102 106301123 -76114119 + AT_rich Low_complexity Low_complexity 1 21 0 517 158 79 0 chr6 106301822 106301923 -76113319 + MLT2B1 LTR ERVL 1 109 -411 866 174 155 0 chr6 106301923 106302084 -76113158 + LTR18A LTR ERVL 1 186 -171 3628 193 9 27 chr6 106302095 106303065 -76112177 + HERVL18 LTR ERVL 160 1810 -4237 1276 113 305 0 chr6 106303064 106303320 -76111922 + HERVL18 LTR ERVL 2119 2452 -3595 * 5143 160 5 2 chr6 106303319 106304177 -76111065 + HERVL18 LTR ERVL 2720 3579 -2468 671 85 11 0 chr6 106304179 106304273 -76110969 + HERVL18 LTR ERVL 4394 4488 -1559 320 241 0 0 chr6 106304273 106304331 -76110911 + HERVL18 LTR ERVL 5209 5266 -781 524 206 0 0 chr6 106304332 106304434 -76110808 + HERVL18 LTR ERVL 5946 6047 0 2439 140 17 0 chr6 106304611 106304962 -76110280 + LTR18A LTR ERVL 1 357 0 1342 180 137 30 chr6 106304962 106305328 -76109914 + MLT2B1 LTR ERVL 106 510 -10 571 236 93 6 chr6 106305362 106305523 -76109719 - MIR SINE MIR -32 230 56 21 36 0 0 chr6 106305759 106305787 -76109455 + AT_rich Low_complexity Low_complexity 1 28 0 2003 99 88 0 chr6 106306692 106306975 -76108267 - AluSc SINE Alu -1 308 1 275 320 0 40 chr6 106307768 106307893 -76107349 + HAL1b LINE L1 781 900 -448 391 270 62 118 chr6 106308000 106308304 -76106938 + HAL1 LINE L1 2221 2507 0 282 56 0 0 chr6 106309091 106309127 -76106115 + (TA)n Simple_repeat Simple_repeat 1 36 0 575 178 0 78 chr6 106309321 106309450 -76105792 + LTR52 LTR ERVL 1 119 -302 2227 123 7 0 chr6 106309451 106309761 -76105481 + AluSp SINE Alu 1 312 -1 816 148 6 23 chr6 106309788 106309964 -76105278 + GA-rich Low_complexity Low_complexity 2 174 0 250 232 36 0 chr6 106309964 106310020 -76105222 + LTR52 LTR ERVL 102 159 -262 580 205 88 12 chr6 106310046 106310217 -76105025 + LTR52 LTR ERVL 216 399 -22 497 229 20 203 chr6 106310277 106310583 -76104659 - MIR SINE MIR 0 262 13 305 282 78 113 chr6 106310630 106311055 -76104187 + L2 LINE L2 2904 3313 0 359 254 153 29 chr6 106311533 106311742 -76103500 - MIR SINE MIR -7 255 21 23 33 0 0 chr6 106311939 106311969 -76103273 + AT_rich Low_complexity Low_complexity 1 30 0 339 25 0 0 chr6 106315927 106315967 -76099275 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 599 88 35 18 chr6 106316420 106316533 -76098709 + CT-rich Low_complexity Low_complexity 1 115 0 352 165 44 66 chr6 106316762 106316853 -76098389 + MIR SINE MIR 114 202 -60 181 286 0 18 chr6 106317703 106317759 -76097483 + L3 LINE CR1 1245 1299 -278 26 30 0 0 chr6 106318885 106318918 -76096324 + AT_rich Low_complexity Low_complexity 1 33 0 242 319 0 123 chr6 106318931 106319135 -76096107 + L2 LINE L2 3006 3184 -88 251 289 157 33 chr6 106319215 106319336 -76095906 + L2 LINE L2 3137 3272 0 180 289 0 0 chr6 106321986 106322038 -76093204 + L3 LINE CR1 1523 1574 -3 208 71 71 0 chr6 106323879 106323921 -76091321 + (TATG)n Simple_repeat Simple_repeat 2 46 0 203 200 0 22 chr6 106324868 106324913 -76090329 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 2267 118 0 0 chr6 106325033 106325339 -76089903 - AluSc SINE Alu -1 308 3 365 296 138 54 chr6 106325859 106326062 -76089180 + MIR SINE MIR 31 250 -12 203 113 65 0 chr6 106326543 106326605 -76088637 + (TA)n Simple_repeat Simple_repeat 2 67 0 2111 117 3 0 chr6 106326720 106327003 -76088239 - AluSg SINE Alu -26 284 1 2352 90 3 3 chr6 106327325 106327635 -76087607 + AluSx SINE Alu 1 310 -2 841 173 50 54 chr6 106327913 106328191 -76087051 - L1MC5 LINE L1 -32 7929 7653 626 289 30 15 chr6 106328736 106328937 -76086305 + MER63A DNA MER1_type 7 210 0 404 335 13 0 chr6 106328937 106329095 -76086147 + MIR SINE MIR 87 246 -16 184 309 274 0 chr6 106332556 106332640 -76082602 - L2 LINE L2 -1 3271 3165 180 111 0 0 chr6 106333528 106333555 -76081687 + (A)n Simple_repeat Simple_repeat 1 27 0 2549 232 48 56 chr6 106335690 106336801 -76078441 + L2 LINE L2 2202 3313 0 212 224 24 12 chr6 106336943 106337028 -76078214 + (TAA)n Simple_repeat Simple_repeat 1 86 0 2596 51 0 3 chr6 106337276 106337587 -76077655 + AluY SINE Alu 1 310 -1 194 392 31 31 chr6 106338118 106338215 -76077027 + L2 LINE L2 3174 3270 -2 268 255 47 57 chr6 106340564 106340776 -76074466 + L1MC4a LINE L1 5722 5931 -1877 25 31 0 0 chr6 106340959 106340991 -76074251 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr6 106343450 106343473 -76071769 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1993 125 0 4 chr6 106343476 106343757 -76071485 - AluSx SINE Alu -32 280 1 26 30 0 0 chr6 106345644 106345677 -76069565 + AT_rich Low_complexity Low_complexity 1 33 0 293 362 7 36 chr6 106346160 106346298 -76068944 + MIR3 SINE MIR 25 158 -50 451 251 144 41 chr6 106346300 106346412 -76068830 - MER58C DNA MER1_type -2205 215 116 2322 74 0 3 chr6 106346412 106346709 -76068533 - AluY SINE Alu -15 296 1 451 251 144 41 chr6 106346709 106346791 -76068451 - MER58C DNA MER1_type -2304 116 1 353 252 25 17 chr6 106347414 106347533 -76067709 - MIR SINE MIR 0 262 143 427 326 104 9 chr6 106348281 106348511 -76066731 + MIR SINE MIR 11 262 0 2393 241 103 30 chr6 106349233 106350318 -76064924 - L1MC4 LINE L1 -95 7713 6571 234 0 0 0 chr6 106350318 106350344 -76064898 + (TG)n Simple_repeat Simple_repeat 2 27 0 2393 241 103 30 chr6 106350344 106350456 -76064786 - L1MC4 LINE L1 -1237 6571 6469 204 333 0 0 chr6 106351081 106351147 -76064095 + MIR SINE MIR 75 140 -122 339 214 39 117 chr6 106351717 106351871 -76063371 + L1MC/D LINE L1 5679 5820 -1988 700 192 49 45 chr6 106351871 106352095 -76063147 + Charlie1 DNA MER1_type 2413 2637 -124 301 310 31 23 chr6 106352133 106352262 -76062980 + L1M LINE L1 5297 5426 -2382 192 356 0 41 chr6 106354557 106354630 -76060612 + MIR SINE MIR 13 82 -180 215 273 26 39 chr6 106354909 106354986 -76060256 - L2 LINE L2 -9 3263 3188 222 254 127 45 chr6 106354993 106355103 -76060139 - MIR3 SINE MIR -77 131 13 254 357 54 0 chr6 106355695 106355807 -76059435 - L2 LINE L2 0 3272 3155 357 319 8 0 chr6 106355993 106356112 -76059130 + L2 LINE L2 2230 2349 -965 348 188 115 31 chr6 106356466 106356562 -76058680 - MER58 DNA MER1_type -106 109 6 24 32 0 0 chr6 106357607 106357638 -76057604 + AT_rich Low_complexity Low_complexity 1 31 0 219 310 43 43 chr6 106357721 106357837 -76057405 - L3 LINE CR1 -45 1532 1417 196 121 30 0 chr6 106358083 106358116 -76057126 - L3 LINE CR1 -277 1300 1267 521 290 65 59 chr6 106358266 106358452 -76056790 - MER5A DNA MER1_type -2 187 1 224 313 61 61 chr6 106358452 106358615 -76056627 - L3 LINE CR1 -664 913 751 * 414 323 25 19 chr6 106358613 106358774 -76056468 + MIR SINE MIR 20 181 -81 363 261 86 108 chr6 106358775 106358997 -76056245 + MIR SINE MIR 32 248 -14 419 314 84 81 chr6 106359039 106359112 -76056130 - L3 LINE CR1 -937 640 569 1841 164 3 10 chr6 106359112 106359416 -76055826 - AluJb SINE Alu -9 303 2 419 314 84 81 chr6 106359416 106359839 -76055403 - L3 LINE CR1 -1008 569 142 301 333 91 41 chr6 106361389 106361608 -76053634 - L2 LINE L2 -2635 679 450 210 374 35 26 chr6 106361959 106362074 -76053168 - MIR SINE MIR -77 131 16 189 147 0 0 chr6 106363613 106363647 -76051595 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr6 106364159 106364188 -76051054 + AT_rich Low_complexity Low_complexity 1 29 0 361 234 227 0 chr6 106365106 106365234 -76050008 - MIR SINE MIR -78 184 28 396 300 50 71 chr6 106365915 106366155 -76049087 - MER102a DNA MER1_type 0 330 96 277 341 64 45 chr6 106367704 106368062 -76047180 - L2 LINE L2 0 3313 2949 2344 331 75 43 chr6 106369016 106370932 -76044310 + HAL1 LINE L1 418 2394 -113 2952 235 78 32 chr6 106371144 106372237 -76043005 - HAL1b LINE L1 -1 1347 205 1026 256 80 74 chr6 106372241 106372927 -76042315 - L2 LINE L2 -14 3299 2598 21 0 0 0 chr6 106373039 106373060 -76042182 + AT_rich Low_complexity Low_complexity 1 21 0 6104 175 26 9 chr6 106373060 106374701 -76040541 + L1MC1 LINE L1 4663 6317 -16 230 222 22 0 chr6 106375952 106375997 -76039245 + polypurine Low_complexity Low_complexity 1 46 0 1847 119 48 10 chr6 106376420 106376713 -76038529 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr6 106376893 106376922 -76038320 + AT_rich Low_complexity Low_complexity 1 29 0 549 313 56 49 chr6 106380557 106380845 -76034397 - L2 LINE L2 -3 3310 3021 261 215 65 47 chr6 106381763 106381870 -76033372 + MLT1K LTR MaLR 477 585 -3 246 105 0 0 chr6 106382343 106382381 -76032861 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 233 296 243 12 chr6 106382421 106382590 -76032652 - L3 LINE CR1 -103 1474 1267 347 289 198 20 chr6 106383405 106383602 -76031640 - MIR SINE MIR -12 250 19 22 0 0 0 chr6 106383682 106383704 -76031538 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr6 106383842 106383898 -76031344 + AT_rich Low_complexity Low_complexity 1 56 0 2006 239 84 2 chr6 106383982 106384238 -76031004 + L1MD1 LINE L1 18 252 -6288 339 25 0 0 chr6 106384238 106384278 -76030964 + (CA)n Simple_repeat Simple_repeat 1 40 0 2006 239 84 2 chr6 106384278 106384511 -76030731 + L1MD1 LINE L1 252 547 -5993 * 3215 222 32 45 chr6 106384510 106384600 -76030642 + L1MD1 LINE L1 4520 4610 -2026 1834 170 3 22 chr6 106384600 106384918 -76030324 - AluSx SINE Alu 0 312 1 3215 222 32 45 chr6 106384918 106385318 -76029924 + L1MD1 LINE L1 4610 5014 -1622 1873 144 0 7 chr6 106385318 106385631 -76029611 + AluSx SINE Alu 1 311 0 3215 222 32 45 chr6 106385631 106385653 -76029589 + L1MD1 LINE L1 5014 5035 -1601 2485 73 0 6 chr6 106385653 106385966 -76029276 + AluY SINE Alu 1 311 0 3215 222 32 45 chr6 106385966 106386933 -76028309 + L1MD1 LINE L1 5035 5980 -656 1357 144 8 17 chr6 106386933 106387164 -76028078 + L1MD1 LINE L1 6396 6629 -7 220 305 186 8 chr6 106387369 106387487 -76027755 - L2 LINE L2 -5 3267 3129 682 274 93 13 chr6 106387544 106387781 -76027461 - MIR SINE MIR -6 256 1 298 301 44 9 chr6 106387877 106387990 -76027252 - L2 LINE L2 -218 3054 2938 2372 175 26 22 chr6 106388064 106388522 -76026720 + MLT1C LTR MaLR 1 615 -11 391 66 229 0 chr6 106388510 106388571 -76026671 + MLT1C LTR MaLR 392 466 -1 * 1176 245 59 31 chr6 106388622 106389046 -76026196 - MER63B DNA MER1_type 0 436 1 5736 117 31 0 chr6 106389395 106390841 -76024401 - L1PA5 LINE L1 0 6154 4659 2129 136 48 20 chr6 106390841 106391193 -76024049 - THE1B LTR MaLR 0 364 3 8519 105 2 0 chr6 106391195 106392333 -76022909 - THE1B-int LTR MaLR 0 1580 441 3700 174 65 31 chr6 106392337 106393282 -76021960 - MER11C LTR ERVK 0 1071 1 2975 112 26 0 chr6 106393282 106393712 -76021530 - THE1B-int LTR MaLR -1138 442 2 2077 135 51 25 chr6 106393713 106394068 -76021174 - THE1B LTR MaLR 0 364 1 231 36 0 0 chr6 106395177 106395205 -76020037 + (TGGA)n Simple_repeat Simple_repeat 1 28 0 183 256 146 12 chr6 106395720 106395802 -76019440 - MIR SINE MIR -68 140 48 2326 67 0 0 chr6 106396675 106397006 -76018236 - AluY SINE Alu 0 331 1 460 116 21 11 chr6 106397069 106397164 -76018078 + GA-rich Low_complexity Low_complexity 3 98 0 393 152 22 11 chr6 106397283 106397375 -76017867 + CT-rich Low_complexity Low_complexity 1 93 0 424 279 137 58 chr6 106398725 106398951 -76016291 + MIR SINE MIR 7 250 -12 1975 168 0 0 chr6 106399021 106399319 -76015923 - AluJb SINE Alu -14 298 1 253 358 37 0 chr6 106399655 106399764 -76015478 - L2 LINE L2 -1 3271 3159 22 0 0 0 chr6 106399889 106399911 -76015331 + AT_rich Low_complexity Low_complexity 1 22 0 653 241 29 6 chr6 106399995 106400165 -76015077 + MER5B DNA MER1_type 4 177 -1 1517 229 108 59 chr6 106400303 106400896 -76014346 - MLT1E3 LTR MaLR 0 624 3 284 353 65 35 chr6 106400920 106401090 -76014152 + L2 LINE L2 3084 3258 -14 302 269 27 23 chr6 106401563 106401692 -76013550 + MIR SINE MIR 25 154 -59 1060 161 65 15 chr6 106402097 106402358 -76012884 - MER33 DNA MER1_type 0 324 51 318 87 0 0 chr6 106403270 106403316 -76011926 + (CA)n Simple_repeat Simple_repeat 1 46 0 221 290 43 32 chr6 106405347 106405440 -76009802 + L2 LINE L2 2907 3000 -272 310 369 48 30 chr6 106405988 106406156 -76009086 + L2 LINE L2 2698 2868 -446 25 90 0 0 chr6 106407773 106407840 -76007402 + AT_rich Low_complexity Low_complexity 1 67 0 221 188 12 75 chr6 106408492 106408572 -76006670 + CT-rich Low_complexity Low_complexity 3 77 0 296 214 0 0 chr6 106408746 106408802 -76006440 - L2 LINE L2 0 3313 3258 180 77 0 0 chr6 106412108 106412134 -76003108 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 180 0 0 0 chr6 106413778 106413798 -76001444 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr6 106415829 106415851 -75999391 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 106416687 106416726 -75998516 + AT_rich Low_complexity Low_complexity 1 39 0 215 281 125 0 chr6 106418613 106418709 -75996533 - MIR3 SINE MIR -3 205 98 267 326 118 27 chr6 106418783 106418970 -75996272 - MIR SINE MIR -48 214 11 216 273 26 13 chr6 106419061 106419138 -75996104 + GA-rich Low_complexity Low_complexity 1 78 0 1774 141 20 7 chr6 106419483 106419782 -75995460 - AluJb SINE Alu -9 303 1 24 0 0 0 chr6 106419817 106419841 -75995401 + AT_rich Low_complexity Low_complexity 1 24 0 217 345 144 35 chr6 106420461 106420690 -75994552 + L3b LINE CR1 1164 1417 -166 396 183 17 78 chr6 106421144 106421259 -75993983 - LTR33A LTR ERVL 0 523 416 386 270 119 54 chr6 106421475 106421660 -75993582 - LTR50 LTR ERVL -573 222 26 265 247 21 0 chr6 106421860 106421957 -75993285 - MER53 DNA DNA -90 99 1 270 288 79 58 chr6 106422181 106422320 -75992922 - MIR SINE MIR -46 216 75 21 36 0 0 chr6 106423548 106423576 -75991666 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 106425317 106425339 -75989903 + AT_rich Low_complexity Low_complexity 1 22 0 487 281 60 12 chr6 106426163 106426330 -75988912 + LTR33 LTR ERVL 307 481 -40 1911 160 0 7 chr6 106426351 106426672 -75988570 - AluSx SINE Alu 0 319 1 235 269 75 0 chr6 106427106 106427199 -75988043 + L2 LINE L2 2119 2218 -1096 724 152 6 6 chr6 106527735 106527906 -75887336 + (CATTA)n Simple_repeat Simple_repeat 2 172 0 355 274 0 0 chr6 106527907 106528031 -75887211 + (CATTC)n Satellite Satellite 4 127 0 627 188 0 0 chr6 106528044 106528220 -75887022 + (CATTC)n Satellite Satellite 1 176 0 501 143 0 82 chr6 106528239 106528435 -75886807 + (CATTC)n Satellite Satellite 1 180 0 752 142 0 27 chr6 106528446 106528629 -75886613 + (CATTC)n Satellite Satellite 2 179 0 618 140 0 37 chr6 106528663 106528827 -75886415 + (CATTC)n Satellite Satellite 4 161 0 836 125 0 27 chr6 106528843 106529027 -75886215 + (CATTC)n Satellite Satellite 2 180 0 1068 148 0 3 chr6 106529048 106529358 -75885884 + (CATTC)n Satellite Satellite 2 310 0 1116 107 0 0 chr6 106529373 106529726 -75885516 + (CATTC)n Satellite Satellite 1 353 0 1068 120 2 13 chr6 106529763 106530312 -75884930 + (CATTC)n Satellite Satellite 1 543 0 1134 140 3 8 chr6 106530328 106531050 -75884192 + (CATTC)n Satellite Satellite 1 718 0 629 145 0 26 chr6 106531078 106531230 -75884012 + (CATTC)n Satellite Satellite 4 151 0 934 117 6 6 chr6 106531249 106531429 -75883813 + (CATTC)n Satellite Satellite 1 180 0 1044 120 0 0 chr6 106531440 106531654 -75883588 + (CATTC)n Satellite Satellite 1 214 0 1206 116 2 11 chr6 106531665 106532207 -75883035 + (CATTC)n Satellite Satellite 1 536 0 1122 88 3 32 chr6 106532221 106532584 -75882658 + (CATTC)n Satellite Satellite 4 353 0 512 145 8 0 chr6 106532599 106532716 -75882526 + (CATTC)n Satellite Satellite 2 119 0 837 93 0 72 chr6 106532742 106532936 -75882306 + (CATTC)n Satellite Satellite 1 180 0 1132 78 6 6 chr6 106532957 106533136 -75882106 + (CATTC)n Satellite Satellite 2 180 0 737 133 4 20 chr6 106533147 106533401 -75881841 + (CATTC)n Satellite Satellite 1 249 0 1140 91 0 0 chr6 106533416 106533592 -75881650 + (CATTC)n Satellite Satellite 2 177 0 719 148 0 27 chr6 106533631 106533814 -75881428 + (CATTC)n Satellite Satellite 2 179 0 1177 75 3 34 chr6 106533830 106534200 -75881042 + (CATTC)n Satellite Satellite 1 359 0 1146 112 0 41 chr6 106534216 106534588 -75880654 + (CATTC)n Satellite Satellite 2 357 0 1281 112 2 3 chr6 106534600 106535205 -75880037 + (CATTC)n Satellite Satellite 1 604 0 311 132 15 0 chr6 106535220 106535288 -75879954 + (CATTC)n Satellite Satellite 2 70 0 180 77 0 0 chr6 106535303 106535329 -75879913 + (CATTC)n Satellite Satellite 1 26 0 990 118 0 0 chr6 106535345 106535515 -75879727 + (CATTC)n Simple_repeat Simple_repeat 2 171 0 249 135 0 0 chr6 106535622 106535674 -75879568 + (CATTC)n Satellite Satellite 5 56 0 891 132 0 0 chr6 106535692 106535866 -75879376 + (CATTC)n Satellite Satellite 5 178 0 912 165 2 0 chr6 106535909 106536456 -75878786 + (CATTC)n Satellite Satellite 1 548 0 1089 106 0 0 chr6 106536476 106536656 -75878586 + (CATTC)n Satellite Satellite 1 180 0 558 154 0 0 chr6 106536672 106536802 -75878440 + (CATTC)n Satellite Satellite 2 131 0 930 140 0 0 chr6 106536817 106536996 -75878246 + (CATTC)n Satellite Satellite 2 180 0 1083 107 0 0 chr6 106537022 106537191 -75878051 + (CATTC)n Satellite Satellite 2 170 0 1111 122 6 4 chr6 106537207 106537709 -75877533 + (CATTC)n Satellite Satellite 1 503 0 872 97 0 59 chr6 106537735 106537986 -75877256 + (CATTC)n Satellite Satellite 1 236 0 972 123 3 2 chr6 106538001 106538638 -75876604 + (CATTC)n Satellite Satellite 1 638 0 870 79 0 61 chr6 106538650 106538884 -75876358 + (CATTC)n Satellite Satellite 1 219 0 950 115 6 0 chr6 106538899 106539073 -75876169 + (CATTC)n Satellite Satellite 2 176 0 1152 89 0 0 chr6 106539092 106539272 -75875970 + (CATTC)n Satellite Satellite 1 180 0 603 146 0 0 chr6 106539288 106539418 -75875824 + (CATTC)n Satellite Satellite 2 131 0 1107 116 0 12 chr6 106539433 106539853 -75875389 + (CATTC)n Satellite Satellite 1 415 0 1176 89 0 0 chr6 106539872 106540052 -75875190 + (CATTC)n Satellite Satellite 1 180 0 288 53 0 0 chr6 106540068 106540106 -75875136 + (CATTC)n Satellite Satellite 2 39 0 1155 122 1 20 chr6 106540132 106541118 -75874124 + (CATTC)n Satellite Satellite 1 967 0 905 114 5 0 chr6 106541133 106541341 -75873901 + (CATTC)n Satellite Satellite 1 209 0 738 153 0 0 chr6 106541353 106541516 -75873726 + (CATTC)n Satellite Satellite 3 165 0 854 123 6 0 chr6 106541544 106541706 -75873536 + (CATTC)n Satellite Satellite 4 166 0 999 128 2 13 chr6 106541721 106542521 -75872721 + (CATTC)n Satellite Satellite 1 791 0 996 129 0 17 chr6 106542536 106543314 -75871928 + (CATTC)n Satellite Satellite 1 764 0 1167 115 1 14 chr6 106543325 106544024 -75871218 + (CATTC)n Satellite Satellite 1 690 0 1155 124 1 11 chr6 106544052 106544951 -75870291 + (CATTC)n Satellite Satellite 1 889 0 930 121 2 44 chr6 106544972 106545426 -75869816 + (CATTC)n Satellite Satellite 1 435 0 1116 146 0 4 chr6 106545437 106546105 -75869137 + (CATTC)n Satellite Satellite 1 665 0 1104 97 0 22 chr6 106546123 106546373 -75868869 + (CATTC)n Satellite Satellite 4 245 0 674 136 0 27 chr6 106546408 106546555 -75868687 + (CATTC)n Satellite Satellite 4 146 0 1209 83 0 0 chr6 106546579 106546759 -75868483 + (CATTC)n Satellite Satellite 1 180 0 723 118 0 0 chr6 106546770 106546905 -75868337 + (CATTC)n Satellite Satellite 2 136 0 309 270 9 0 chr6 106546922 106547037 -75868205 + (CATTC)n Satellite Satellite 4 119 0 189 132 0 0 chr6 106547053 106547091 -75868151 + (CATTT)n Simple_repeat Simple_repeat 1 38 0 631 137 7 7 chr6 106547306 106547445 -75867797 + (CATTA)n Simple_repeat Simple_repeat 1 139 0 585 147 13 6 chr6 106547457 106547614 -75867628 + (CATTA)n Simple_repeat Simple_repeat 2 159 0 313 247 0 0 chr6 106547618 106547707 -75867535 + (CATTC)n Simple_repeat Simple_repeat 4 92 0 395 189 0 33 chr6 106547721 106547874 -75867368 + (CATTA)n Simple_repeat Simple_repeat 2 149 0 204 200 0 0 chr6 106547886 106547956 -75867286 + (CATTC)n Satellite Satellite 2 71 0 617 131 0 26 chr6 106547981 106548134 -75867108 + (CATTC)n Satellite Satellite 2 150 0 443 127 0 45 chr6 106548194 106548304 -75866938 + (CATTC)n Satellite Satellite 2 106 0 1076 84 0 6 chr6 106548319 106548486 -75866756 + (CATTC)n Satellite Satellite 2 167 0 596 158 0 7 chr6 106548588 106548727 -75866515 + (CATTC)n Satellite Satellite 2 139 0 891 142 0 0 chr6 106548739 106548915 -75866327 + (CATTC)n Satellite Satellite 2 177 0 1026 134 0 16 chr6 106548943 106549306 -75865936 + (CATTC)n Satellite Satellite 2 358 0 857 125 0 35 chr6 106549318 106549580 -75865662 + (CATTC)n Satellite Satellite 1 252 0 996 99 6 6 chr6 106549593 106549764 -75865478 + (CATTC)n Satellite Satellite 3 173 0 940 84 0 53 chr6 106549882 106550072 -75865170 + (CATTC)n Satellite Satellite 1 180 0 1146 139 1 17 chr6 106550088 106551210 -75864032 + (CATTC)n Satellite Satellite 1 1104 0 366 167 0 0 chr6 106551221 106551305 -75863937 + (CATTC)n Satellite Satellite 2 85 0 1038 107 0 0 chr6 106551321 106551498 -75863744 + (CATTC)n Satellite Satellite 3 179 0 747 137 6 22 chr6 106551510 106551692 -75863550 + (CATTC)n Satellite Satellite 2 180 0 1119 94 0 0 chr6 106551722 106551902 -75863340 + (CATTC)n Satellite Satellite 1 180 0 1080 137 2 13 chr6 106551918 106553025 -75862217 + (CATTC)n Satellite Satellite 1 1094 0 1011 117 0 0 chr6 106553040 106553220 -75862022 + (CATTC)n Satellite Satellite 1 180 0 817 114 0 49 chr6 106553236 106553420 -75861822 + (CATTC)n Satellite Satellite 2 176 0 1104 106 0 0 chr6 106553435 106553614 -75861628 + (CATTC)n Satellite Satellite 2 180 0 981 145 0 22 chr6 106553632 106553987 -75861255 + (CATTC)n Satellite Satellite 4 348 0 314 139 14 0 chr6 106554005 106554077 -75861165 + (CATTC)n Satellite Satellite 2 74 0 864 134 0 0 chr6 106554091 106554262 -75860980 + (CATTC)n Satellite Satellite 4 174 0 447 87 0 0 chr6 106554274 106554343 -75860899 + (CATTC)n Satellite Satellite 2 70 0 1101 94 0 44 chr6 106554378 106554747 -75860495 + (CATTC)n Satellite Satellite 1 353 0 918 142 2 19 chr6 106554763 106555285 -75859957 + (CATTC)n Satellite Satellite 1 513 0 752 130 0 25 chr6 106555319 106555481 -75859761 + (CATTC)n Satellite Satellite 4 161 0 1068 136 2 2 chr6 106555500 106555965 -75859277 + (CATTC)n Satellite Satellite 1 465 0 738 108 0 72 chr6 106555985 106556179 -75859063 + (CATTC)n Satellite Satellite 1 180 0 1158 95 0 0 chr6 106556204 106556383 -75858859 + (CATTC)n Satellite Satellite 1 179 0 1134 102 3 19 chr6 106556397 106556750 -75858492 + (CATTC)n Satellite Satellite 4 348 0 1111 130 3 9 chr6 106556765 106557552 -75857690 + (CATTC)n Satellite Satellite 1 782 0 854 122 0 23 chr6 106557580 106557752 -75857490 + (CATTC)n Satellite Satellite 4 171 0 1116 95 0 0 chr6 106557767 106557995 -75857247 + (CATTC)n Satellite Satellite 1 228 0 1101 101 0 0 chr6 106558016 106558195 -75857047 + (CATTC)n Satellite Satellite 1 179 0 716 153 0 22 chr6 106558207 106558436 -75856806 + (CATTC)n Satellite Satellite 1 223 0 1098 121 2 9 chr6 106558451 106559428 -75855814 + (CATTC)n Satellite Satellite 1 969 0 1134 116 0 18 chr6 106559440 106559697 -75855545 + (CATTC)n Satellite Satellite 2 253 0 1045 115 5 34 chr6 106559718 106560088 -75855154 + (CATTC)n Satellite Satellite 1 360 0 785 125 4 39 chr6 106560114 106560622 -75854620 + (CATTC)n Satellite Satellite 1 490 0 1035 125 3 27 chr6 106560641 106561009 -75854233 + (CATTC)n Satellite Satellite 1 359 0 1160 84 6 0 chr6 106561030 106561209 -75854033 + (CATTC)n Satellite Satellite 1 180 0 1023 120 0 32 chr6 106561230 106561594 -75853648 + (CATTC)n Satellite Satellite 2 353 0 1158 126 0 17 chr6 106561605 106562292 -75852950 + (CATTC)n Satellite Satellite 1 675 0 1222 63 5 5 chr6 106562306 106562533 -75852709 + (CATTC)n Satellite Satellite 1 227 0 1056 119 4 21 chr6 106562579 106563121 -75852121 + (CATTC)n Satellite Satellite 1 532 0 978 117 0 0 chr6 106563133 106563312 -75851930 + (CATTC)n Satellite Satellite 2 180 0 696 157 0 0 chr6 106563328 106563475 -75851767 + (CATTC)n Satellite Satellite 2 148 0 490 152 0 54 chr6 106563501 106563685 -75851557 + (CATTC)n Satellite Satellite 5 178 0 332 296 0 0 chr6 106563703 106563855 -75851387 + (CATAC)n Simple_repeat Simple_repeat 2 153 0 295 71 18 18 chr6 106664117 106664173 -75751069 + (TA)n Simple_repeat Simple_repeat 1 56 0 194 0 39 0 chr6 106669361 106669387 -75745855 + (CA)n Simple_repeat Simple_repeat 2 28 0 198 143 0 0 chr6 106670418 106670453 -75744789 + (CA)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr6 106671189 106671211 -75744031 + (T)n Simple_repeat Simple_repeat 1 22 0 321 256 8 17 chr6 106675070 106675187 -75740055 + GA-rich Low_complexity Low_complexity 2 117 0 213 196 0 0 chr6 106675187 106675233 -75740009 + (CAG)n Simple_repeat Simple_repeat 3 48 0 423 100 0 0 chr6 106675580 106675650 -75739592 + (CGG)n Simple_repeat Simple_repeat 1 70 0 561 88 0 0 chr6 106675751 106675831 -75739411 + (CAG)n Simple_repeat Simple_repeat 3 82 0 23 0 0 0 chr6 106676093 106676116 -75739126 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 106676811 106676832 -75738410 + AT_rich Low_complexity Low_complexity 1 21 0 210 176 20 0 chr6 106676974 106677025 -75738217 + GA-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr6 106678468 106678490 -75736752 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 106679828 106679849 -75735393 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 106684376 106684404 -75730838 + GC_rich Low_complexity Low_complexity 1 28 0 230 186 34 0 chr6 106685733 106685792 -75729450 + (CCCCG)n Simple_repeat Simple_repeat 3 63 0 237 211 39 0 chr6 106686340 106686392 -75728850 + CT-rich Low_complexity Low_complexity 5 58 0 339 341 48 39 chr6 106687277 106687485 -75727757 + MIR SINE MIR 2 211 -51 1455 178 133 0 chr6 106687566 106687830 -75727412 - AluJo SINE Alu -2 300 2 7394 148 37 13 chr6 106690759 106692458 -75722784 + L1MA8 LINE L1 4045 5702 -589 324 0 0 0 chr6 106692458 106692494 -75722748 + (CA)n Simple_repeat Simple_repeat 2 37 0 7394 148 37 13 chr6 106692494 106692885 -75722357 + L1MA8 LINE L1 5702 6188 -103 1944 78 4 11 chr6 106692885 106693153 -75722089 - AluY SINE Alu -5 306 41 7394 148 37 13 chr6 106693153 106693250 -75721992 + L1MA8 LINE L1 6188 6281 -10 2522 53 0 0 chr6 106693493 106693796 -75721446 + AluY SINE Alu 1 303 -8 21 0 0 0 chr6 106694264 106694285 -75720957 + AT_rich Low_complexity Low_complexity 1 21 0 418 284 72 68 chr6 106695040 106695276 -75719966 + MLT1H LTR MaLR 1 237 -312 227 267 122 0 chr6 106695434 106695524 -75719718 + MLT1H LTR MaLR 445 545 -4 327 348 59 8 chr6 106696485 106696603 -75718639 - MLT1K LTR MaLR -398 190 67 1529 209 70 59 chr6 106697772 106698260 -75716982 - MLT2B1 LTR ERVL -27 493 1 7074 136 55 16 chr6 106698260 106698344 -75716898 - ERVL LTR ERVL 0 5757 5678 2243 161 68 22 chr6 106698344 106698753 -75716489 - MSTA LTR MaLR 0 428 1 7074 136 55 16 chr6 106698753 106700008 -75715234 - ERVL LTR ERVL -79 5678 4289 1934 120 20 7 chr6 106700583 106700883 -75714359 - AluJb SINE Alu -8 304 1 1113 255 80 21 chr6 106701355 106701692 -75713550 - L2 LINE L2 -4 3309 2953 356 193 385 0 chr6 106701785 106701894 -75713348 - L2 LINE L2 -528 2786 2636 287 302 95 32 chr6 106702293 106702419 -75712823 + MER5A DNA MER1_type 46 179 -10 5551 27 0 2 chr6 106702736 106703369 -75711873 - L1PA4 LINE L1 0 6155 5524 198 333 83 0 chr6 106703373 106703445 -75711797 - MIR SINE MIR -56 152 75 21 36 0 0 chr6 106703585 106703613 -75711629 + AT_rich Low_complexity Low_complexity 1 28 0 256 307 72 90 chr6 106703784 106704074 -75711168 + MLT1I LTR MaLR 92 376 -33 825 255 36 0 chr6 106704781 106704973 -75710269 - MER63A DNA MER1_type -10 200 2 22 35 0 0 chr6 106705006 106705035 -75710207 + AT_rich Low_complexity Low_complexity 1 29 0 222 174 0 0 chr6 106705713 106705759 -75709483 + (TA)n Simple_repeat Simple_repeat 1 46 0 269 245 117 0 chr6 106706454 106706548 -75708694 - MER103 DNA DNA -10 156 52 8683 27 1 1 chr6 106707071 106708876 -75706366 + L1PA3 LINE L1 4350 6154 -1 22 0 0 0 chr6 106709483 106709505 -75705737 + AT_rich Low_complexity Low_complexity 1 22 0 1750 170 14 3 chr6 106709857 106710139 -75705103 + AluJb SINE Alu 1 285 -27 228 111 0 0 chr6 106710147 106710183 -75705059 + (CATA)n Simple_repeat Simple_repeat 4 39 0 9293 176 143 19 chr6 106710770 106711306 -75703936 + Cheshire DNA MER1_type 2 470 -1950 2095 153 0 0 chr6 106711306 106711607 -75703635 + AluSx SINE Alu 1 301 -11 9293 176 143 19 chr6 106711607 106713221 -75702021 + Cheshire DNA MER1_type 470 2420 0 969 250 35 4 chr6 106713254 106713482 -75701760 + MIR SINE MIR 8 242 -20 431 123 65 18 chr6 106713714 106713884 -75701358 + (TA)n Simple_repeat Simple_repeat 2 179 0 843 228 6 6 chr6 106714089 106714256 -75700986 - FAM SINE Alu -8 167 1 225 0 0 0 chr6 106714959 106714984 -75700258 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 662 327 139 27 chr6 106717208 106717756 -75697486 - L2 LINE L2 -343 2971 2363 823 169 0 0 chr6 106718889 106719013 -75696229 - FRAM SINE Alu -53 123 1 834 93 0 0 chr6 106720107 106720215 -75695027 + AluSg SINE Alu 1 108 -202 1681 109 0 9 chr6 106720244 106720474 -75694768 + AluSg/x SINE Alu 80 307 -5 190 164 15 164 chr6 106720475 106720542 -75694700 - MIR3 SINE MIR -27 181 125 27 29 0 0 chr6 106721963 106721997 -75693245 + AT_rich Low_complexity Low_complexity 1 34 0 816 288 93 36 chr6 106723306 106724412 -75690830 - L1ME LINE L1 -362 5808 4633 328 189 100 44 chr6 106724628 106724718 -75690524 - MIR SINE MIR -2 260 166 519 184 11 0 chr6 106724724 106724811 -75690431 - L2 LINE L2 0 3313 3226 458 305 76 33 chr6 106724921 106725345 -75689897 - L1MEc LINE L1 -840 1736 1257 2019 204 82 32 chr6 106725381 106725539 -75689703 + MLT1F1 LTR MaLR 5 154 -413 1406 203 87 81 chr6 106725539 106725616 -75689626 + MLT2B1 LTR ERVL 1 76 -444 1970 145 7 0 chr6 106725616 106725906 -75689336 - AluSc SINE Alu -17 292 1 1406 203 87 81 chr6 106725906 106726345 -75688897 + MLT2B1 LTR ERVL 76 520 0 2019 204 82 32 chr6 106726345 106726720 -75688522 + MLT1F1 LTR MaLR 154 565 -2 192 222 44 0 chr6 106726721 106726766 -75688476 + L2 LINE L2 3263 3309 -4 180 0 0 0 chr6 106726792 106726812 -75688430 + (GA)n Simple_repeat Simple_repeat 1 20 0 1675 172 0 56 chr6 106727473 106727793 -75687449 + AluJb SINE Alu 1 302 -10 1395 184 0 0 chr6 106728669 106728892 -75686350 + MER58A DNA MER1_type 1 223 -1 1768 143 11 0 chr6 106729939 106730204 -75685038 + AluJb SINE Alu 34 301 -11 2151 132 0 0 chr6 106731143 106731453 -75683789 + AluSx SINE Alu 1 310 -2 793 150 15 15 chr6 106732111 106732244 -75682998 + FLAM_C SINE Alu 1 133 0 2449 141 16 0 chr6 106733743 106734127 -75681115 - MLT1B LTR MaLR 0 390 1 423 202 292 0 chr6 106734199 106734359 -75680883 + L1MC4 LINE L1 7847 8041 -1 1880 133 42 3 chr6 106734388 106734673 -75680569 - AluJo SINE Alu -16 296 1 222 347 102 10 chr6 106736058 106736156 -75679086 + MIR SINE MIR 39 145 -63 312 325 79 0 chr6 106737881 106738007 -75677235 - MIR SINE MIR -64 144 26 1458 170 10 42 chr6 106738063 106738352 -75676890 - MSTB2 LTR MaLR -2 455 176 668 325 126 22 chr6 106738393 106738805 -75676437 - L2 LINE L2 0 3313 2859 510 243 90 54 chr6 106738816 106738926 -75676316 + L1MC4a LINE L1 5584 5586 -584 1581 94 0 0 chr6 106738926 106739128 -75676114 + AluSg/x SINE Alu 96 297 -13 510 243 90 54 chr6 106739128 106739344 -75675898 + L1MC4a LINE L1 5586 5793 -377 889 256 169 26 chr6 106741482 106741960 -75673282 - L2 LINE L2 0 3313 2772 206 328 45 102 chr6 106744331 106744508 -75670734 + L2 LINE L2 3098 3264 -8 245 217 289 0 chr6 106746471 106746554 -75668688 - L2 LINE L2 -21 3251 3145 6941 55 13 1 chr6 106746702 106747655 -75667587 - L1PA7 LINE L1 -20 6134 5171 403 317 70 48 chr6 106747738 106748009 -75667233 - L2 LINE L2 -529 2785 2509 919 140 140 30 chr6 106748372 106748572 -75666670 + MER31A LTR ERV1 243 464 -21 581 305 147 8 chr6 106748780 106749160 -75666082 - L1MC4a LINE L1 -1882 5926 5494 336 253 102 102 chr6 106749305 106749609 -75665633 - L1MC4a LINE L1 -1312 4834 4531 185 355 39 26 chr6 106749868 106750023 -75665219 + L2 LINE L2 2827 2983 -289 2378 78 0 13 chr6 106750878 106751186 -75664056 + AluY SINE Alu 1 304 -7 43531 41 4 2 chr6 106751194 106757335 -75657907 + L1PA3 LINE L1 1 6154 -1 271 254 14 0 chr6 106759248 106759319 -75655923 - L1ME LINE L1 -500 5621 5550 303 315 39 31 chr6 106759370 106759500 -75655742 - L1ME LINE L1 -906 5453 5323 180 322 102 0 chr6 106759567 106759626 -75655616 - L2 LINE L2 -1035 2279 2215 24 53 0 0 chr6 106760623 106760661 -75654581 + AT_rich Low_complexity Low_complexity 1 38 0 402 21 0 0 chr6 106761316 106761363 -75653879 + (CA)n Simple_repeat Simple_repeat 2 48 0 1732 90 0 0 chr6 106762509 106762732 -75652510 - AluSg SINE Alu -87 223 1 288 250 223 71 chr6 106763515 106763811 -75651431 + LTR16A1 LTR ERVL 78 418 -39 323 284 251 21 chr6 106763950 106764284 -75650958 + L2 LINE L2 2861 3271 -1 341 214 36 57 chr6 106764284 106764424 -75650818 + L1ME4a LINE L1 5982 6118 -3 2150 119 0 0 chr6 106764782 106765077 -75650165 + AluSx SINE Alu 2 296 -16 408 232 27 89 chr6 106765422 106765534 -75649708 + L2 LINE L2 3207 3311 -2 1034 221 31 17 chr6 106765580 106765870 -75649372 + L1MC4a LINE L1 5311 5604 -2204 1321 229 85 9 chr6 106765938 106766361 -75648881 + L1MC4a LINE L1 5591 6045 -1763 25 0 0 0 chr6 106767881 106767906 -75647336 + AT_rich Low_complexity Low_complexity 1 25 0 23 86 0 0 chr6 106768455 106768513 -75646729 + AT_rich Low_complexity Low_complexity 1 58 0 2102 126 0 3 chr6 106768834 106769136 -75646106 - AluSq SINE Alu -12 301 1 31 26 0 0 chr6 106769610 106769648 -75645594 + AT_rich Low_complexity Low_complexity 1 38 0 2315 113 3 0 chr6 106769796 106770106 -75645136 + AluSp SINE Alu 1 311 -2 352 318 95 52 chr6 106770250 106770694 -75644548 + L1MEd LINE L1 308 770 -5349 945 180 0 6 chr6 106770774 106770946 -75644296 + AluSg/x SINE Alu 129 299 -11 23 0 0 0 chr6 106771125 106771148 -75644094 + AT_rich Low_complexity Low_complexity 1 23 0 751 138 0 0 chr6 106771148 106771257 -75643985 + FRAM SINE Alu 43 151 -25 261 365 229 8 chr6 106774020 106774269 -75640973 + L2 LINE L2 2958 3261 -11 884 73 0 0 chr6 106774807 106774917 -75640325 + AluSg/x SINE Alu 182 291 -18 2800 10 0 0 chr6 106776014 106776318 -75638924 + AluYb8 SINE Alu 1 304 -14 971 250 71 47 chr6 106776706 106776923 -75638319 - L1ME2 LINE L1 -47 6117 5907 2345 164 25 25 chr6 106776923 106777355 -75637887 + Tigger2a DNA MER2_type 3 434 0 971 250 71 47 chr6 106777355 106777466 -75637776 - L1ME2 LINE L1 -257 5907 5800 15453 132 28 45 chr6 106777466 106777545 -75637697 - Tigger2 DNA MER2_type 0 2718 2639 2029 116 36 0 chr6 106777545 106777821 -75637421 + AluSx SINE Alu 12 297 -15 15453 132 28 45 chr6 106777821 106779307 -75635935 - Tigger2 DNA MER2_type -79 2639 1129 1680 169 46 23 chr6 106779307 106779609 -75635633 + AluJo SINE Alu 1 309 -3 15453 132 28 45 chr6 106779609 106779652 -75635590 - Tigger2 DNA MER2_type -1589 1129 1087 225 94 0 0 chr6 106779652 106779684 -75635558 + (AAATG)n Simple_repeat Simple_repeat 5 36 0 15453 132 28 45 chr6 106779684 106780837 -75634405 - Tigger2 DNA MER2_type -1631 1087 2 971 250 71 47 chr6 106780837 106780887 -75634355 - L1ME2 LINE L1 -364 5800 5729 1278 191 79 8 chr6 106780896 106781270 -75633972 - L1ME2 LINE L1 -595 5571 5175 1981 236 32 30 chr6 106781455 106781985 -75633257 + L1ME1 LINE L1 5521 6051 -115 2294 148 54 0 chr6 106782855 106783261 -75631981 + MSTA LTR MaLR 1 428 0 1533 148 53 14 chr6 106783462 106783745 -75631497 + L1MD2 LINE L1 6039 6332 -27 2082 135 0 22 chr6 106783797 106784116 -75631126 + AluJb SINE Alu 1 312 0 300 292 83 12 chr6 106784791 106785051 -75630191 + L1MC4a LINE L1 5209 5487 -634 1889 217 86 17 chr6 106785066 106785531 -75629711 + LTR40a LTR ERVL 23 519 0 465 282 112 49 chr6 106785583 106786012 -75629230 + L1MC4a LINE L1 5556 6015 -147 231 286 16 0 chr6 106786558 106786621 -75628621 - L2 LINE L2 -5 3308 3245 201 132 75 19 chr6 106788135 106788188 -75627054 + G-rich Low_complexity Low_complexity 6 61 0 24 0 0 0 chr6 106788236 106788260 -75626982 + GC_rich Low_complexity Low_complexity 1 24 0 280 120 43 33 chr6 106788490 106788582 -75626660 + (CGGGG)n Simple_repeat Simple_repeat 5 97 0 2213 59 37 4 chr6 106789092 106789365 -75625877 - AluSc SINE Alu -24 285 4 23 0 0 0 chr6 106789555 106789578 -75625664 + AT_rich Low_complexity Low_complexity 1 23 0 10824 150 41 33 chr6 106789588 106792620 -75622622 - L1MA4 LINE L1 -12 6288 3203 939 250 4 4 chr6 106792615 106792843 -75622399 + L1MD3 LINE L1 7732 7959 -36 * 227 167 0 0 chr6 106792857 106792911 -75622331 + L1MD3 LINE L1 7942 7995 0 1438 237 120 15 chr6 106793038 106793503 -75621739 - L1ME3A LINE L1 -4 6166 5653 193 71 0 48 chr6 106794583 106794625 -75620617 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1737 126 92 7 chr6 106794642 106794913 -75620329 - AluSg SINE Alu -16 294 1 2091 127 0 0 chr6 106794915 106795214 -75620028 - AluSx SINE Alu -13 299 1 413 286 129 7 chr6 106795221 106795368 -75619874 - MIR3 SINE MIR -14 194 30 312 252 161 34 chr6 106795489 106795645 -75619597 + MIR SINE MIR 34 212 -50 23 0 0 0 chr6 106795676 106795699 -75619543 + AT_rich Low_complexity Low_complexity 1 23 0 437 369 31 6 chr6 106795731 106795891 -75619351 - MIR3 SINE MIR -12 196 33 26 0 0 0 chr6 106796822 106796848 -75618394 + AT_rich Low_complexity Low_complexity 1 26 0 5991 48 4 1 chr6 106797224 106797966 -75617276 + L1PA7 LINE L1 5409 6152 -2 452 242 221 7 chr6 106798799 106798948 -75616294 - MER5A DNA MER1_type 0 189 9 216 158 0 0 chr6 106800108 106800146 -75615096 + T-rich Low_complexity Low_complexity 1 38 0 199 249 54 0 chr6 106800685 106800761 -75614481 + MIR SINE MIR 34 117 -91 300 137 0 0 chr6 106801729 106801780 -75613462 + (CA)n Simple_repeat Simple_repeat 1 51 0 28 71 0 0 chr6 106801832 106801888 -75613354 + AT_rich Low_complexity Low_complexity 1 56 0 253 360 139 47 chr6 106801921 106802229 -75613013 - L2 LINE L2 -5 3267 2924 1300 187 116 33 chr6 106802229 106802566 -75612676 + MLT1A1 LTR MaLR 1 365 0 253 360 139 47 chr6 106802566 106802596 -75612646 - L2 LINE L2 -348 2924 2898 282 366 187 11 chr6 106803134 106803382 -75611860 + L2 LINE L2 2424 2729 -585 460 132 13 0 chr6 106803382 106803458 -75611784 - MADE1 DNA Mariner -3 77 1 282 366 187 11 chr6 106803458 106803493 -75611749 + L2 LINE L2 2729 2757 -557 545 294 130 19 chr6 106804112 106804687 -75610555 + L1M4 LINE L1 3277 3925 -2221 414 101 0 0 chr6 106805993 106806062 -75609180 + (GA)n Simple_repeat Simple_repeat 2 70 0 375 216 16 92 chr6 106806297 106806428 -75608814 + MIR SINE MIR 20 163 -45 209 161 0 0 chr6 106806751 106806782 -75608460 + (CA)n Simple_repeat Simple_repeat 2 32 0 1739 176 0 27 chr6 106807152 106807448 -75607794 - AluJb SINE Alu -24 288 1 604 285 135 19 chr6 106807485 106807745 -75607497 + MLT1K LTR MaLR 111 400 -188 184 276 105 0 chr6 106807773 106807849 -75607393 + L2 LINE L2 1950 2033 -1281 236 246 53 23 chr6 106807853 106808024 -75607218 + (TATAG)n Simple_repeat Simple_repeat 5 180 0 * 344 155 87 6 chr6 106807915 106808076 -75607166 + (TA)n Simple_repeat Simple_repeat 1 174 0 398 348 13 6 chr6 106808261 106808419 -75606823 - L2 LINE L2 -269 3003 2845 496 281 9 55 chr6 106808427 106808644 -75606598 + ERVL LTR ERVL 4335 4541 -1223 1279 206 12 8 chr6 106808981 106809238 -75606004 - MER77 LTR ERV1 -62 543 286 359 130 0 0 chr6 106809238 106809292 -75605950 - MLT1A1 LTR MaLR 0 365 312 1655 167 78 52 chr6 106809292 106809718 -75605524 - MSTB2 LTR MaLR 0 457 21 1557 134 10 48 chr6 106809723 106810014 -75605228 - MLT1A1 LTR MaLR -49 316 37 225 231 15 31 chr6 106810034 106810099 -75605143 - MER77 LTR ERV1 -315 290 227 2534 70 0 3 chr6 106810292 106810604 -75604638 + AluY SINE Alu 1 311 0 1128 246 62 32 chr6 106811517 106812046 -75603196 - L2 LINE L2 -1 3312 2766 395 289 78 14 chr6 106813022 106813164 -75602078 - MIR SINE MIR -27 235 85 223 355 131 0 chr6 106813499 106813606 -75601636 + MIR SINE MIR 34 154 -108 2893 183 14 30 chr6 106813758 106814326 -75600916 - MER89 LTR ERV1 0 559 1 568 319 47 50 chr6 106814679 106815043 -75600199 + MLT1K LTR MaLR 88 450 -138 1526 227 46 61 chr6 106815833 106816374 -75598868 + LTR55 LTR ERV 1 533 -15 1608 150 45 117 chr6 106820919 106821339 -75593903 + MLT1B LTR MaLR 1 390 0 453 333 21 27 chr6 106821340 106821526 -75593716 + L2 LINE L2 2896 3080 -192 222 229 17 34 chr6 106822042 106822160 -75593082 + (CATATA)n Simple_repeat Simple_repeat 1 116 0 223 232 0 85 chr6 106822392 106822474 -75592768 + L2 LINE L2 3238 3312 -1 402 204 99 88 chr6 106823968 106824149 -75591093 + MIR SINE MIR 38 220 -42 1088 271 79 42 chr6 106824468 106824655 -75590587 - L1ME4a LINE L1 -23 6098 5919 1672 181 24 45 chr6 106824655 106825030 -75590212 + MLT1A2 LTR MaLR 4 370 -4 1088 271 79 42 chr6 106825030 106825514 -75589728 - L1ME4a LINE L1 -202 5919 5402 32 43 0 0 chr6 106825590 106825636 -75589606 + AT_rich Low_complexity Low_complexity 1 46 0 29 0 0 0 chr6 106825797 106825826 -75589416 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 106826463 106826484 -75588758 + AT_rich Low_complexity Low_complexity 1 21 0 416 239 67 15 chr6 106827666 106827800 -75587442 + L2 LINE L2 3169 3309 -4 21 57 0 0 chr6 106827946 106827981 -75587261 + AT_rich Low_complexity Low_complexity 1 35 0 385 233 52 43 chr6 106829222 106829338 -75585904 - L2 LINE L2 -5 3267 3151 1270 259 9 32 chr6 106829548 106829895 -75585347 - MER58B DNA MER1_type -1 340 2 270 286 32 71 chr6 106830200 106830354 -75584888 + L2 LINE L2 2897 3044 -228 381 312 68 34 chr6 106830489 106830694 -75584548 + MIR SINE MIR 21 232 -30 702 261 11 11 chr6 106830763 106830943 -75584299 - MIR SINE MIR 0 262 83 556 267 139 11 chr6 106831675 106831862 -75583380 + MIR SINE MIR 9 219 -43 2217 126 0 0 chr6 106831907 106832209 -75583033 + AluSx SINE Alu 1 302 -10 295 251 135 61 chr6 106832363 106832526 -75582716 + MER5A DNA MER1_type 10 184 -5 300 284 46 18 chr6 106833624 106833733 -75581509 + L2 LINE L2 3190 3301 -12 943 168 0 13 chr6 106833734 106833883 -75581359 + FRAM SINE Alu 12 158 -18 206 79 0 26 chr6 106833888 106833926 -75581316 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 793 133 60 0 chr6 106833956 106834106 -75581136 - LTR47A LTR ERVL 0 452 294 1121 298 147 7 chr6 106834639 106835113 -75580129 + L2 LINE L2 2741 3271 -1 235 321 57 43 chr6 106836920 106837060 -75578182 + L2 LINE L2 2917 3058 -214 1039 224 81 32 chr6 106837096 106837444 -75577798 - MLT1A1 LTR MaLR 0 365 1 249 211 35 105 chr6 106837834 106837948 -75577294 - Charlie8 DNA MER1_type -9 2408 227 227 267 77 0 chr6 106838072 106838145 -75577097 - MIR SINE MIR -65 143 74 180 200 0 0 chr6 106838334 106838374 -75576868 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 21 36 0 0 chr6 106838390 106838418 -75576824 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 106838449 106838471 -75576771 + AT_rich Low_complexity Low_complexity 1 22 0 421 349 72 47 chr6 106839607 106839885 -75575357 - L2 LINE L2 0 3272 2988 1970 190 14 8 chr6 106839898 106840261 -75574981 + MLT1A1 LTR MaLR 1 365 0 445 262 37 0 chr6 106840794 106840901 -75574341 + L2 LINE L2 3196 3306 -7 326 234 16 0 chr6 106842319 106842383 -75572859 - L2 LINE L2 -5 3308 3244 232 230 11 92 chr6 106842326 106842413 -75572829 - MIR SINE MIR -6 256 177 * 2882 6 0 0 chr6 106842833 106843144 -75572098 - AluYb8 SINE Alu -7 311 1 282 304 10 97 chr6 106844118 106844325 -75570917 + MIR SINE MIR 33 221 -41 1097 257 214 46 chr6 106845010 106845934 -75569308 + L2 LINE L2 2230 3313 0 384 331 101 92 chr6 106846071 106846550 -75568692 + L2 LINE L2 2790 3272 0 589 230 0 0 chr6 106846651 106846790 -75568452 - L1 LINE L1 -1584 4562 4424 1282 91 16 16 chr6 106846793 106846961 -75568281 - AluY SINE Alu -8 303 133 2424 70 10 3 chr6 106846961 106847263 -75567979 - AluY SINE Alu -7 304 1 1282 91 16 16 chr6 106847263 106847281 -75567961 - AluY SINE Alu -177 134 117 448 205 29 95 chr6 106847282 106847492 -75567750 - L1 LINE L1 -1734 4412 4217 1341 171 7 14 chr6 106847494 106847775 -75567467 + L1 LINE L1 3933 4211 -1935 1170 165 23 8 chr6 106848221 106848482 -75566760 + L1MA4A LINE L1 6039 6303 0 2573 48 3 0 chr6 106848538 106848848 -75566394 - AluY SINE Alu 0 311 1 2284 113 0 0 chr6 106849778 106850088 -75565154 - AluSx SINE Alu 0 312 3 349 206 214 0 chr6 106850198 106850324 -75564918 - L1ME4a LINE L1 -4 6117 5965 208 276 174 0 chr6 106850956 106851054 -75564188 + L2 LINE L2 3199 3313 0 265 250 0 14 chr6 106851522 106851594 -75563648 + LTR33A LTR ERVL 453 523 0 5108 131 35 62 chr6 106852251 106853334 -75561908 + Tigger3b DNA MER2_type 1 1054 -177 225 162 0 0 chr6 106853327 106853364 -75561878 - Tigger3(Golem) DNA MER2_type -122 2907 2871 * 361 177 85 43 chr6 106853378 106853519 -75561723 - Tigger3(Golem) DNA MER2_type -584 2445 2299 * 1191 121 0 0 chr6 106853509 106853682 -75561560 + Tigger3(Golem) DNA MER2_type 2856 3028 -1 679 330 36 0 chr6 106855069 106855290 -75559952 - MIR SINE MIR -25 237 9 400 315 34 13 chr6 106855846 106855995 -75559247 - MIR SINE MIR -75 187 36 268 158 37 98 chr6 106856362 106856444 -75558798 + MIR3 SINE MIR 92 168 -40 979 266 90 56 chr6 106857175 106857618 -75557624 + L2 LINE L2 2833 3290 -23 436 225 18 0 chr6 106857719 106857830 -75557412 + MER94 DNA DNA 7 119 -15 2250 144 53 3 chr6 106859811 106860151 -75555091 - LTR18A LTR ERVL 0 357 1 35054 166 14 7 chr6 106860152 106861018 -75554224 - HERVL18-A1 LTR ERVL 0 6047 5189 2687 90 24 57 chr6 106861018 106861474 -75553768 - MLT2A1 LTR ERVL 0 444 4 35054 166 14 7 chr6 106861474 106866603 -75548639 - HERVL18-A1 LTR ERVL -858 5189 10 2256 133 53 0 chr6 106866618 106866957 -75548285 - LTR18A LTR ERVL 0 357 1 2326 101 48 31 chr6 106866991 106867346 -75547896 + THE1B LTR MaLR 4 364 0 194 352 11 0 chr6 106867415 106867503 -75547739 + L2 LINE L2 2900 2988 -284 345 317 58 0 chr6 106867552 106867672 -75547570 - L2 LINE L2 -30 3242 3116 926 254 105 6 chr6 106868005 106868339 -75546903 - L2 LINE L2 -121 3192 2826 796 241 34 24 chr6 106869357 106869564 -75545678 - MIR SINE MIR -49 213 5 3941 138 24 15 chr6 106873613 106874057 -75541185 + L1MC1 LINE L1 5657 6110 -223 2384 165 21 16 chr6 106874057 106874481 -75540761 + MSTB LTR MaLR 1 426 0 3941 138 24 15 chr6 106874481 106874702 -75540540 + L1MC1 LINE L1 6110 6328 -5 475 329 74 14 chr6 106875086 106875302 -75539940 + MIR SINE MIR 20 248 -14 319 326 79 16 chr6 106875402 106875592 -75539650 - L1M4 LINE L1 -1027 5119 4918 573 301 136 17 chr6 106876638 106876983 -75538259 + LTR16B LTR ERVL 77 462 -2 317 321 38 0 chr6 106877050 106877156 -75538086 - MER91C DNA MER1_type -30 110 1 1643 150 31 77 chr6 106877425 106877778 -75537464 - MER58B DNA MER1_type -4 337 1 630 298 21 0 chr6 106879233 106879421 -75535821 + MIR SINE MIR 10 201 -61 16242 37 3 1 chr6 106882968 106885064 -75530178 - L1P LINE L1 -2445 3701 1601 244 290 130 30 chr6 106885607 106885707 -75529535 - L3 LINE CR1 -6 1571 1462 313 295 47 11 chr6 106886093 106886249 -75528993 - L3 LINE CR1 -75 1502 1279 4175 129 74 22 chr6 106886403 106886895 -75528347 - L1MA9 LINE L1 -2 6310 5760 536 42 14 0 chr6 106886895 106886966 -75528276 + (TG)n Simple_repeat Simple_repeat 2 73 0 4175 129 74 22 chr6 106886966 106887274 -75527968 - L1MA9 LINE L1 -552 5760 5469 862 264 89 59 chr6 106887533 106887992 -75527250 + MLT1J LTR MaLR 1 473 -38 561 239 51 73 chr6 106890428 106890856 -75524386 + L1MDb LINE L1 992 1410 -4986 807 260 64 17 chr6 106890994 106891290 -75523952 + L1MDb LINE L1 1820 2129 -4458 2199 173 66 28 chr6 106891290 106891735 -75523507 + MLT2B1 LTR ERVL 2 467 -53 209 33 33 0 chr6 106891735 106891765 -75523477 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 2199 173 66 28 chr6 106891765 106891788 -75523454 + MLT2B1 LTR ERVL 467 488 -32 280 48 95 0 chr6 106891896 106891938 -75523304 + MLT2B1 LTR ERVL 475 520 0 555 250 164 0 chr6 106892321 106892473 -75522769 + MER5A DNA MER1_type 13 189 0 205 341 36 58 chr6 106892473 106892586 -75522656 - MER5A DNA MER1_type -34 155 46 187 222 111 0 chr6 106894486 106894531 -75520711 - MIR3 SINE MIR -28 180 131 2499 92 0 0 chr6 106894689 106894995 -75520247 + AluSx SINE Alu 1 306 -6 213 239 183 28 chr6 106895296 106895367 -75519875 + MIR SINE MIR 32 113 -149 22 56 0 0 chr6 106896163 106896199 -75519043 + AT_rich Low_complexity Low_complexity 1 36 0 332 340 0 19 chr6 106896338 106896441 -75518801 - L2 LINE L2 -10 3303 3203 2176 133 55 37 chr6 106896443 106896964 -75518278 + MLT2A2 LTR ERVL 1 554 0 1112 311 96 22 chr6 106897241 106897762 -75517480 - L2 LINE L2 -383 2931 2355 2003 121 0 65 chr6 106897762 106898084 -75517158 + AluSx SINE Alu 1 301 -11 1112 311 96 22 chr6 106898084 106898185 -75517057 - L2 LINE L2 -959 2355 2263 275 290 65 28 chr6 106898189 106898296 -75516946 + L2 LINE L2 2941 3051 -221 844 321 57 48 chr6 106898326 106898936 -75516306 - L2 LINE L2 -752 2562 1947 669 196 31 116 chr6 106898968 106899192 -75516050 - MER63A DNA MER1_type -4 206 2 595 288 12 12 chr6 106899194 106899354 -75515888 - MER5B DNA MER1_type -17 161 2 226 200 221 41 chr6 106899591 106899786 -75515456 + MLT1K LTR MaLR 349 578 -10 21 0 0 0 chr6 106900009 106900030 -75515212 + AT_rich Low_complexity Low_complexity 1 21 0 36 70 0 0 chr6 106901335 106901406 -75513836 + AT_rich Low_complexity Low_complexity 1 71 0 590 128 15 60 chr6 106901409 106901542 -75513700 - MER106B DNA MER1_type -904 155 29 382 326 21 42 chr6 106902859 106903049 -75512193 - L1ME3 LINE L1 -336 5826 5641 317 274 108 6 chr6 106903385 106903542 -75511700 - HAL1 LINE L1 -1089 1418 1246 322 290 165 58 chr6 106903583 106903911 -75511331 - HAL1 LINE L1 -1334 1173 811 360 236 268 0 chr6 106907467 106907590 -75507652 - MIR SINE MIR -101 161 6 200 167 0 0 chr6 106907801 106907837 -75507405 - MIR SINE MIR -12 250 215 221 206 14 41 chr6 106908650 106908723 -75506519 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 466 121 15 0 chr6 106908752 106908818 -75506424 + Tigger2 DNA MER2_type 3 69 -2649 * 2096 133 121 24 chr6 106908802 106909214 -75506028 + Tigger2 DNA MER2_type 2267 2718 0 766 242 87 35 chr6 106909246 106909477 -75505765 - MIR SINE MIR 0 262 20 26 64 0 0 chr6 106910174 106910221 -75505021 + AT_rich Low_complexity Low_complexity 1 47 0 253 205 0 84 chr6 106910287 106910314 -75504928 - L1MCc LINE L1 -3798 3143 3115 1751 154 0 48 chr6 106910314 106910626 -75504616 - AluJo SINE Alu -15 297 1 253 205 0 84 chr6 106910626 106910681 -75504561 - L1MCc LINE L1 -3826 3115 3068 1185 304 66 25 chr6 106910752 106911239 -75504003 + HERV16 LTR ERVL 1929 2435 -2561 761 214 181 14 chr6 106911257 106911467 -75503775 - MER93b LTR ERV1 -128 245 1 1016 371 57 34 chr6 106911470 106912031 -75503211 + HERV16 LTR ERVL 2818 3391 -1605 2861 119 29 0 chr6 106912070 106912489 -75502753 - Tigger3(Golem) DNA MER2_type -2 3027 2597 449 301 30 25 chr6 106912506 106912742 -75502500 + HERV16 LTR ERVL 4755 4991 -5 1499 260 83 25 chr6 106912751 106913186 -75502056 + LTR16B LTR ERVL 5 464 0 298 225 278 16 chr6 106913246 106913433 -75501809 - L1MCc LINE L1 -4891 1532 1297 371 330 86 43 chr6 106914183 106914556 -75500686 + L2 LINE L2 2921 3309 -4 582 248 166 44 chr6 106915530 106915849 -75499393 - L2 LINE L2 -10 3303 2946 609 239 0 11 chr6 106918898 106919185 -75496057 + GA-rich Low_complexity Low_complexity 1 283 0 724 155 7 14 chr6 106919805 106919953 -75495289 + CT-rich Low_complexity Low_complexity 4 150 0 588 298 93 23 chr6 106920272 106920487 -75494755 + MIR SINE MIR 3 232 -30 430 180 53 0 chr6 106921464 106921557 -75493685 - MLT1H1 LTR MaLR -35 520 415 322 314 41 0 chr6 106921562 106921683 -75493559 - L2 LINE L2 -1061 2253 2128 3762 138 7 37 chr6 106921692 106922263 -75492979 - MLT2B3 LTR ERVL 0 554 1 365 221 13 0 chr6 106922400 106922477 -75492765 - MLT1J2 LTR MaLR -118 424 347 1216 306 37 32 chr6 106922545 106922950 -75492292 - MLT1I LTR MaLR -2 407 1 185 150 0 25 chr6 106923367 106923407 -75491835 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 2195 91 37 0 chr6 106924842 106925138 -75490104 + AluSc SINE Alu 1 307 -2 261 167 91 30 chr6 106925259 106925325 -75489917 - HERV15 LTR ERV1 -9 8726 8657 197 279 0 0 chr6 106926187 106926230 -75489012 - L3b LINE CR1 -255 1328 1286 21 0 0 0 chr6 106927442 106927463 -75487779 + AT_rich Low_complexity Low_complexity 1 21 0 553 276 122 0 chr6 106927671 106927827 -75487415 + MER96 DNA MER1_type 1 175 0 1781 129 55 7 chr6 106928784 106929077 -75486165 + AluSx SINE Alu 1 306 0 2504 52 0 3 chr6 106929220 106929526 -75485716 + AluY SINE Alu 1 305 -6 367 333 133 18 chr6 106929685 106929970 -75485272 - MLT1J2 LTR MaLR -63 387 70 272 207 35 58 chr6 106930500 106930587 -75484655 - MIR3 SINE MIR 0 208 124 1971 130 0 11 chr6 106931113 106931398 -75483844 + AluSx SINE Alu 1 282 -30 272 233 0 17 chr6 106931820 106931880 -75483362 - L2 LINE L2 0 3313 3255 591 245 200 20 chr6 106932051 106932251 -75482991 - MIR SINE MIR -8 254 19 617 225 146 38 chr6 106933597 106933810 -75481432 - MIR SINE MIR -13 249 14 389 309 0 24 chr6 106935684 106935807 -75479435 + L2 LINE L2 2677 2796 -518 282 98 0 0 chr6 106936727 106936768 -75478474 + L1 LINE L1 4943 4983 -1163 295 266 138 0 chr6 106937256 106937350 -75477892 - MER5C DNA MER1_type 0 324 218 6184 125 15 17 chr6 106937369 106938168 -75477074 + L1PB3 LINE L1 4774 5569 -585 2563 52 0 13 chr6 106938168 106938476 -75476766 - AluY SINE Alu -7 304 1 6184 125 15 17 chr6 106938476 106939054 -75476188 + L1PB3 LINE L1 5569 6147 -7 1127 46 0 0 chr6 106939105 106939235 -75476007 + L1PA15 LINE L1 6023 6152 -13 275 349 37 0 chr6 106939235 106939334 -75475908 - MER5C DNA MER1_type -218 106 1 1402 165 137 0 chr6 106939347 106939632 -75475610 + MER33 DNA MER1_type 1 324 0 1897 150 0 33 chr6 106940842 106941148 -75474094 + AluJb SINE Alu 1 296 -16 418 260 21 0 chr6 106941345 106941441 -75473801 - MER94 DNA DNA -36 98 1 657 341 107 21 chr6 106942047 106942411 -75472831 + L2 LINE L2 2790 3207 -106 234 0 0 0 chr6 106942411 106942437 -75472805 + (TC)n Simple_repeat Simple_repeat 1 26 0 657 341 107 21 chr6 106942437 106942552 -75472690 + L2 LINE L2 3207 3311 -2 1488 153 8 8 chr6 106942680 106942929 -75472313 + L1MA1 LINE L1 6047 6295 -7 28 29 0 0 chr6 106942929 106942964 -75472278 + AT_rich Low_complexity Low_complexity 1 35 0 220 208 21 0 chr6 106943196 106943244 -75471998 + GA-rich Low_complexity Low_complexity 4 52 0 238 265 59 0 chr6 106943332 106943400 -75471842 + MIR SINE MIR 80 151 -111 24 32 0 0 chr6 106945254 106945285 -75469957 + AT_rich Low_complexity Low_complexity 1 31 0 903 228 14 28 chr6 106945310 106945521 -75469721 - AluJb SINE Alu -15 297 90 1880 140 124 30 chr6 106945569 106945933 -75469309 + L1PA16 LINE L1 5767 6164 -2 5553 137 37 45 chr6 106945943 106947094 -75468148 + L1MA8 LINE L1 5137 6279 -12 345 156 102 86 chr6 106947095 106947223 -75468019 - L1ME4a LINE L1 -27 6094 5965 3867 119 34 32 chr6 106947242 106947863 -75467379 - L1PA13 LINE L1 -7 6156 5535 496 335 138 16 chr6 106947980 106948284 -75466958 - L2 LINE L2 -6 3266 2926 2003 153 62 12 chr6 106948798 106949119 -75466123 - MER1B DNA MER1_type 0 337 1 894 208 74 65 chr6 106949365 106949581 -75465661 - MER58A DNA MER1_type -6 218 1 284 114 23 0 chr6 106949783 106949827 -75465415 - LTR67 LTR ERVL -13 544 500 502 335 55 31 chr6 106949874 106950131 -75465111 - LTR67 LTR ERVL -253 304 42 318 296 34 0 chr6 106951265 106951353 -75463889 + L2 LINE L2 3223 3313 0 1271 241 190 21 chr6 106954668 106955100 -75460142 - MLT1D LTR MaLR 0 505 1 1208 249 15 40 chr6 106956466 106956795 -75458447 - MLT1I LTR MaLR -2 407 87 450 362 68 0 chr6 106956902 106957079 -75458163 - L3 LINE CR1 -138 1439 1251 207 315 11 45 chr6 106958206 106958295 -75456947 - MIR SINE MIR -68 194 109 348 243 0 0 chr6 106958666 106958736 -75456506 + MER94 DNA DNA 8 77 -57 990 205 10 0 chr6 106959333 106959528 -75455714 + MER3 DNA MER1_type 1 197 -12 252 0 0 0 chr6 106959550 106959578 -75455664 + (TG)n Simple_repeat Simple_repeat 1 28 0 525 71 0 0 chr6 106959578 106959648 -75455594 + (TA)n Simple_repeat Simple_repeat 1 70 0 2198 102 27 0 chr6 106961943 106962236 -75453006 + AluSg SINE Alu 1 301 -9 432 253 187 31 chr6 106963242 106963467 -75451775 - MIR SINE MIR 0 262 3 225 178 0 0 chr6 106963546 106963591 -75451651 + (CA)n Simple_repeat Simple_repeat 2 46 0 225 0 0 0 chr6 106963595 106963620 -75451622 + (TG)n Simple_repeat Simple_repeat 2 26 0 1955 252 51 58 chr6 106965071 106965214 -75450028 + L1MC4 LINE L1 7179 7321 -721 505 110 12 37 chr6 106965214 106965296 -75449946 - MADE1 DNA Mariner 0 80 1 1955 252 51 58 chr6 106965296 106965788 -75449454 + L1MC4 LINE L1 7321 7811 -231 2254 91 0 44 chr6 106965788 106966108 -75449134 + AluSg1 SINE Alu 1 306 -3 1955 252 51 58 chr6 106966108 106966216 -75449026 + L1MC4 LINE L1 7811 7918 -124 359 230 21 71 chr6 106966241 106966403 -75448839 + L1MC4 LINE L1 7880 7995 0 229 283 51 43 chr6 106967439 106967577 -75447665 - L1ME LINE L1 -5891 179 41 806 191 158 0 chr6 106967964 106968147 -75447095 - MIR SINE MIR -9 253 42 301 214 101 0 chr6 106968486 106968575 -75446667 - MIR SINE MIR -70 192 95 2341 39 42 0 chr6 106968718 106969004 -75446238 + AluY SINE Alu 1 298 -13 2386 88 0 0 chr6 106969119 106969414 -75445828 + AluSc SINE Alu 1 295 -14 347 282 12 0 chr6 106969880 106969965 -75445277 + MIR SINE MIR 50 135 -127 196 200 33 0 chr6 106971347 106971407 -75443835 + CT-rich Low_complexity Low_complexity 1 62 0 311 309 106 32 chr6 106972572 106972883 -75442359 + MER102b DNA MER1_type 4 337 -4 23 68 0 0 chr6 106974010 106974054 -75441188 + AT_rich Low_complexity Low_complexity 1 44 0 261 368 59 15 chr6 106974342 106974478 -75440764 - MIR3 SINE MIR -5 203 62 183 259 0 0 chr6 106974996 106975054 -75440188 + GA-rich Low_complexity Low_complexity 3 60 0 247 374 91 9 chr6 106975523 106975742 -75439500 - MIR SINE MIR -5 257 21 286 244 24 37 chr6 106976937 106977019 -75438223 - MER5A DNA MER1_type -22 167 87 228 341 12 0 chr6 106977417 106977499 -75437743 - L2 LINE L2 -8 3305 3223 351 248 43 8 chr6 106978297 106978414 -75436828 + L1ME4a LINE L1 5955 6075 -46 306 50 0 0 chr6 106981162 106981202 -75434040 + (TCTCCC)n Simple_repeat Simple_repeat 6 45 0 1180 157 26 4 chr6 106981202 106981431 -75433811 + SVA Other Other 68 301 -1085 4350 42 0 0 chr6 106981534 106982011 -75433231 + SVA Other Other 905 1381 -5 735 245 38 0 chr6 106982038 106982197 -75433045 - MER5A DNA MER1_type -21 168 4 235 336 48 41 chr6 106982342 106982488 -75432754 - MIR3 SINE MIR -40 168 22 197 276 0 17 chr6 106983241 106983299 -75431943 + L2 LINE L2 3216 3272 0 654 245 80 30 chr6 106983714 106983914 -75431328 + MER63A DNA MER1_type 1 210 0 254 323 114 24 chr6 106984286 106984452 -75430790 - MIR3 SINE MIR -6 202 20 695 112 0 0 chr6 106984537 106984626 -75430616 - AluSc SINE Alu -220 89 1 21 71 0 0 chr6 106985733 106985775 -75429467 + AT_rich Low_complexity Low_complexity 1 42 0 351 314 75 37 chr6 106987912 106988100 -75427142 - MIR SINE MIR -15 247 53 21 0 0 31 chr6 106988601 106988613 -75426629 + AT_rich Low_complexity Low_complexity 1 12 -19 2136 151 23 37 chr6 106988613 106988885 -75426357 - MER7A DNA MER2_type -2692 346 80 1612 196 7 0 chr6 106988885 106989197 -75426045 + AluJb SINE Alu 1 314 0 2136 151 23 37 chr6 106989197 106989275 -75425967 - MER7A DNA MER2_type -2958 80 2 21 0 0 31 chr6 106989275 106989294 -75425948 + AT_rich Low_complexity Low_complexity 12 31 0 21 36 0 0 chr6 106989461 106989489 -75425753 + AT_rich Low_complexity Low_complexity 1 28 0 282 153 0 0 chr6 106990057 106990116 -75425126 + T-rich Low_complexity Low_complexity 1 59 0 346 350 56 48 chr6 106991538 106991895 -75423347 - L2 LINE L2 -357 2957 2598 1701 205 87 29 chr6 106991904 106992284 -75422958 + MLT1E1 LTR MaLR 1 402 -252 731 145 16 0 chr6 106992273 106992397 -75422845 + MLT1E1 LTR MaLR 529 654 0 * 243 245 16 147 chr6 106992432 106992616 -75422626 - L2 LINE L2 -912 2402 2243 428 325 81 14 chr6 106992871 106993166 -75422076 - L2 LINE L2 -1115 2199 1885 198 216 0 0 chr6 106993204 106993241 -75422001 + MIR SINE MIR 116 152 -110 268 352 105 0 chr6 106994642 106994747 -75420495 + MER5B DNA MER1_type 51 166 -12 2282 102 0 7 chr6 106994857 106995161 -75420081 + AluSq SINE Alu 1 302 -11 207 0 0 0 chr6 106995754 106995777 -75419465 + (TTG)n Simple_repeat Simple_repeat 2 24 0 241 354 16 47 chr6 106996095 106996222 -75419020 - L2 LINE L2 -27 3245 3123 7277 58 12 11 chr6 106996436 106997969 -75417273 + SVA Other Other 4 1381 -5 683 260 39 0 chr6 106998001 106998155 -75417087 - MER5A DNA MER1_type -26 163 4 368 256 107 16 chr6 106999288 106999409 -75415833 - L2 LINE L2 0 3313 3182 691 204 107 44 chr6 107000386 107000690 -75414552 + MSTB2 LTR MaLR 1 449 -8 815 157 0 43 chr6 107000691 107000831 -75414411 + AluJo SINE Alu 1 134 -178 634 257 41 41 chr6 107000980 107001225 -75414017 + L1ME LINE L1 5532 5776 -345 250 240 0 0 chr6 107004368 107004418 -75410824 + LTR41 LTR ERVL 468 517 -256 460 302 13 27 chr6 107004724 107004873 -75410369 + MIR SINE MIR 50 196 -66 3174 232 62 24 chr6 107007619 107008567 -75406675 - L1ME3A LINE L1 -6 6164 5183 2145 116 10 0 chr6 107008602 107008895 -75406347 + AluSq SINE Alu 1 296 -17 1801 194 30 19 chr6 107009976 107010337 -75404905 - MLT1A1 LTR MaLR 0 365 1 575 228 0 0 chr6 107010431 107010537 -75404705 + AluJ/FLAM SINE Alu 3 99 -213 * 722 140 40 0 chr6 107010530 107010630 -75404612 + AluJo/FRAM SINE Alu 176 279 -33 189 0 0 0 chr6 107010635 107010656 -75404586 + (TAA)n Simple_repeat Simple_repeat 2 22 0 21 57 0 0 chr6 107010662 107010697 -75404545 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 107011093 107011121 -75404121 + AT_rich Low_complexity Low_complexity 1 28 0 689 168 13 134 chr6 107011288 107011520 -75403722 + LTR41 LTR ERVL 530 733 -40 258 285 5 81 chr6 107013483 107013704 -75401538 + MLT1J LTR MaLR 106 309 -202 2494 48 0 0 chr6 107013878 107014170 -75401072 + AluY SINE Alu 1 292 -19 28 95 0 0 chr6 107014327 107014411 -75400831 + AT_rich Low_complexity Low_complexity 1 84 0 302 233 0 0 chr6 107014534 107014594 -75400648 + L2 LINE L2 3254 3313 0 1437 202 123 10 chr6 107015594 107015945 -75399297 - MLT1E LTR MaLR 0 582 206 374 284 145 52 chr6 107015945 107016146 -75399096 + L2 LINE L2 2432 2613 -701 1432 196 87 31 chr6 107016146 107016559 -75398683 + MER63B DNA MER1_type 1 436 0 374 284 145 52 chr6 107016559 107016723 -75398519 + L2 LINE L2 2613 2831 -483 652 261 75 0 chr6 107016771 107016959 -75398283 - MIR SINE MIR 0 262 61 221 297 0 0 chr6 107017276 107017340 -75397902 + GA-rich Low_complexity Low_complexity 1 64 0 240 59 59 0 chr6 107018210 107018261 -75396981 + (TA)n Simple_repeat Simple_repeat 1 54 0 32561 35 1 0 chr6 107018509 107023419 -75391823 + L1PA3 LINE L1 1239 6150 -5 196 333 0 0 chr6 107023444 107023498 -75391744 + L2 LINE L2 3242 3295 -18 180 111 0 0 chr6 107023517 107023544 -75391698 + (GAATG)n Simple_repeat Simple_repeat 1 27 0 2276 185 26 32 chr6 107024500 107025003 -75390239 - MLT1D LTR MaLR -2 503 4 4746 204 6 22 chr6 107025197 107025506 -75389736 + L1P LINE L1 4213 4525 -1621 2052 137 0 7 chr6 107025506 107025806 -75389436 + AluJb SINE Alu 1 298 -14 4746 204 6 22 chr6 107025806 107026694 -75388548 + L1P LINE L1 4525 5391 -755 1396 147 36 117 chr6 107027112 107027445 -75387797 - AluYb8 SINE Alu -12 306 1 180 372 54 16 chr6 107027722 107027851 -75387391 - MIR SINE MIR -42 220 87 188 111 28 0 chr6 107028697 107028733 -75386509 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 286 356 38 23 chr6 107028734 107028866 -75386376 - L2 LINE L2 0 3272 3139 759 279 62 16 chr6 107028990 107029295 -75385947 - LTR16C LTR ERVL -6 485 167 27 62 0 0 chr6 107029644 107029692 -75385550 + AT_rich Low_complexity Low_complexity 1 48 0 256 282 39 58 chr6 107030688 107030791 -75384451 - L2 LINE L2 -10 3262 3162 434 176 34 0 chr6 107030801 107030920 -75384322 + (TA)n Simple_repeat Simple_repeat 1 123 0 2079 115 42 3 chr6 107030968 107031256 -75383986 - AluSx SINE Alu -13 299 1 181 317 33 0 chr6 107031899 107031959 -75383283 - MIR SINE MIR -188 74 13 556 275 126 30 chr6 107033154 107033973 -75381269 - L1ME4a LINE L1 -3 6118 5209 1385 196 19 19 chr6 107034281 107034592 -75380650 - MER58B DNA MER1_type -29 312 2 699 274 91 19 chr6 107034661 107034924 -75380318 + MLT1I LTR MaLR 128 409 0 1849 144 3 11 chr6 107034989 107035273 -75379969 - AluSx SINE Alu -25 287 6 341 234 47 28 chr6 107035281 107035388 -75379854 + MIR SINE MIR 104 212 -50 237 217 0 0 chr6 107036534 107036580 -75378662 - L2 LINE L2 -85 3228 3183 1776 140 11 7 chr6 107036812 107037083 -75378159 + AluSx SINE Alu 22 293 -19 348 24 0 0 chr6 107037091 107037132 -75378110 + (TG)n Simple_repeat Simple_repeat 2 42 0 233 243 0 43 chr6 107037463 107037533 -75377709 + MIR SINE MIR 136 202 -60 261 0 0 0 chr6 107037578 107037607 -75377635 + (TG)n Simple_repeat Simple_repeat 2 30 0 186 261 43 29 chr6 107037610 107037679 -75377563 + MIR SINE MIR 193 262 0 1742 181 0 17 chr6 107038756 107039049 -75376193 - AluJo SINE Alu -22 290 3 495 184 0 0 chr6 107039061 107039164 -75376078 - MER53 DNA DNA -64 125 23 1677 143 196 16 chr6 107039170 107039533 -75375709 + MSTA LTR MaLR 1 428 0 219 269 26 51 chr6 107039542 107039620 -75375622 + MIR3 SINE MIR 109 184 -24 2059 131 42 34 chr6 107040102 107040460 -75374782 + THE1B LTR MaLR 1 361 -3 23 33 0 0 chr6 107040522 107040552 -75374690 + AT_rich Low_complexity Low_complexity 1 30 0 235 263 199 6 chr6 107040552 107040723 -75374519 + L1MC/D LINE L1 5600 5803 -2005 312 238 138 11 chr6 107041085 107041266 -75373976 + L1ME LINE L1 5606 5809 -312 227 111 44 0 chr6 107042089 107042134 -75373108 + Alu SINE Alu 256 302 -1 354 247 86 0 chr6 107042167 107042248 -75372994 - MER5A DNA MER1_type -84 105 18 913 192 0 22 chr6 107042275 107042457 -75372785 - MER5B DNA MER1_type 0 178 1 1134 277 26 57 chr6 107043038 107043684 -75371558 - L1MEc LINE L1 -972 5243 4618 2641 97 49 132 chr6 107043690 107043910 -75371332 + MER4B LTR ERV1 1 238 -541 2289 93 0 38 chr6 107043910 107044223 -75371019 + AluY SINE Alu 1 301 -10 2641 97 49 132 chr6 107044223 107044667 -75370575 + MER4B LTR ERV1 238 779 0 1812 247 41 14 chr6 107044669 107045330 -75369912 - L1MEc LINE L1 -1602 4613 3935 605 269 0 6 chr6 107045341 107045501 -75369741 - L1MEc LINE L1 -3338 2877 2719 998 191 10 21 chr6 107045722 107045916 -75369326 + MER20 DNA MER1_type 27 218 -1 1106 276 86 51 chr6 107045971 107047454 -75367788 - L1MEc LINE L1 -3983 2413 878 21 0 0 0 chr6 107051008 107051029 -75364213 + AT_rich Low_complexity Low_complexity 1 21 0 233 211 39 0 chr6 107053931 107053983 -75361259 + L2 LINE L2 3194 3247 -25 1984 184 45 45 chr6 107054380 107054737 -75360505 - MLT1D LTR MaLR 0 505 146 1310 137 78 5 chr6 107054737 107054956 -75360286 + MER46A DNA MER2_type 1 235 -1 1984 184 45 45 chr6 107054956 107055103 -75360139 - MLT1D LTR MaLR -358 147 1 288 137 0 0 chr6 107055589 107055640 -75359602 + (CA)n Simple_repeat Simple_repeat 2 52 0 440 62 0 15 chr6 107055838 107055903 -75359339 + (CA)n Simple_repeat Simple_repeat 2 65 0 186 43 0 0 chr6 107057350 107057373 -75357869 + (TG)n Simple_repeat Simple_repeat 2 24 0 3373 120 43 6 chr6 107057444 107057951 -75357291 + MER1A DNA MER1_type 2 527 0 276 30 0 0 chr6 107058738 107058771 -75356471 + (TAA)n Simple_repeat Simple_repeat 3 35 0 645 81 0 0 chr6 107059585 107059672 -75355570 + L1PB1 LINE L1 6021 6107 -44 195 309 123 0 chr6 107059771 107059852 -75355390 - L2 LINE L2 -24 3289 3199 214 383 0 32 chr6 107060482 107060576 -75354666 + L2 LINE L2 3090 3180 -92 763 208 39 45 chr6 107060803 107060883 -75354359 - MER45A DNA AcHobo -1404 177 98 1105 241 40 45 chr6 107060883 107061281 -75353961 - MSTD LTR MaLR 0 396 1 763 208 39 45 chr6 107061281 107061378 -75353864 - MER45A DNA AcHobo -1483 98 1 357 309 103 0 chr6 107061599 107061725 -75353517 - MIR SINE MIR -27 235 97 26810 130 16 16 chr6 107061731 107067143 -75348099 - L1PA8A LINE L1 0 6446 995 15539 59 0 4 chr6 107067582 107069487 -75345755 + L1P LINE L1 1 1898 -4248 264 302 119 0 chr6 107073284 107073410 -75341832 + MIR SINE MIR 108 248 -14 337 300 100 13 chr6 107075144 107075239 -75340003 + MER5A DNA MER1_type 21 135 -54 2155 129 0 3 chr6 107075239 107075542 -75339700 + AluSg SINE Alu 1 302 -8 337 300 100 13 chr6 107075542 107075596 -75339646 + MER5A DNA MER1_type 135 183 -6 683 256 188 36 chr6 107076404 107076877 -75338365 + MLT1H1 LTR MaLR 3 547 -8 328 235 52 0 chr6 107077784 107077899 -75337343 + L1ME4a LINE L1 5749 5869 -252 344 225 12 0 chr6 107077899 107077979 -75337263 + MIR SINE MIR 71 151 -111 392 197 55 98 chr6 107077982 107078165 -75337077 + MER104 DNA Tc2 1 175 -5 227 312 18 18 chr6 107078168 107078277 -75336965 + MIR SINE MIR 153 261 -1 618 209 5 128 chr6 107078461 107078657 -75336585 - MER5B DNA MER1_type -6 172 1 519 238 98 12 chr6 107078707 107078871 -75336371 + MIR SINE MIR 8 185 -77 23 0 0 0 chr6 107080344 107080367 -75334875 + AT_rich Low_complexity Low_complexity 1 23 0 433 217 150 33 chr6 107080702 107080882 -75334360 - MER3 DNA MER1_type -2 207 7 36 53 0 0 chr6 107081230 107081287 -75333955 + AT_rich Low_complexity Low_complexity 1 57 0 440 289 78 12 chr6 107081389 107081555 -75333687 + MIR3 SINE MIR 5 181 -27 760 263 98 28 chr6 107081945 107082230 -75333012 + L2 LINE L2 3008 3312 -1 835 315 72 55 chr6 107083103 107083214 -75332028 + L3 LINE CR1 770 878 -699 2231 116 3 3 chr6 107083214 107083525 -75331717 + AluSq SINE Alu 1 311 -2 835 315 72 55 chr6 107083525 107083987 -75331255 + L3 LINE CR1 878 1359 -218 4342 114 12 8 chr6 107083987 107084634 -75330608 - L1PA16 LINE L1 -9 6157 5508 835 315 72 55 chr6 107084634 107084735 -75330507 + L3 LINE CR1 1359 1457 -120 205 226 119 36 chr6 107084832 107084916 -75330326 + MIR3 SINE MIR 86 176 -32 38 39 0 0 chr6 107087023 107087075 -75328167 + AT_rich Low_complexity Low_complexity 1 52 0 2157 127 0 0 chr6 107087297 107087588 -75327654 - AluSx SINE Alu -20 292 2 233 143 24 0 chr6 107089317 107089359 -75325883 - LTR1 LTR ERV1 0 785 743 396 227 16 62 chr6 107089388 107089516 -75325726 + HUERS-P2 LTR ERV1 1 122 -2966 2603 18 0 0 chr6 107089535 107089845 -75325397 + AluY SINE Alu 3 312 0 4395 199 71 19 chr6 107089864 107090776 -75324466 + HUERS-P2 LTR ERV1 214 1173 -1915 6762 133 34 8 chr6 107090797 107092251 -75322991 + HUERS-P2 LTR ERV1 1545 3088 0 4353 130 50 52 chr6 107092293 107093080 -75322162 + LTR1 LTR ERV1 1 785 0 2218 93 0 0 chr6 107094459 107094737 -75320505 + AluSc SINE Alu 1 278 -31 207 0 0 0 chr6 107094740 107094763 -75320479 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1665 165 39 0 chr6 107094932 107095211 -75320031 - AluJo SINE Alu -22 290 1 1088 199 102 123 chr6 107095302 107095725 -75319517 - MLT2B1 LTR ERVL 0 414 1 804 145 187 0 chr6 107095725 107095891 -75319351 + L1MA5A LINE L1 6095 6291 -6 39 50 0 0 chr6 107095911 107095971 -75319271 + AT_rich Low_complexity Low_complexity 1 60 0 1111 208 122 39 chr6 107096152 107096489 -75318753 - MLT1A1 LTR MaLR 0 365 1 2074 141 20 3 chr6 107096781 107097087 -75318155 + AluSx SINE Alu 1 311 -1 2118 117 42 0 chr6 107097150 107097484 -75317758 + L1PA15 LINE L1 5814 6161 -4 235 310 132 20 chr6 107097603 107097800 -75317442 - L2 LINE L2 -924 2390 2172 2056 133 13 0 chr6 107097943 107098243 -75316999 + AluSx SINE Alu 1 304 -8 2190 53 365 181 chr6 107098336 107098444 -75316798 - LTR12 LTR ERV1 0 714 627 4409 30 0 0 chr6 107098444 107098953 -75316289 + L1PA4 LINE L1 5637 6145 -10 300 27 0 0 chr6 107098953 107098990 -75316252 + (TTAAA)n Simple_repeat Simple_repeat 4 40 0 2190 53 365 181 chr6 107098990 107099482 -75315760 - LTR12 LTR ERV1 -86 628 2 4736 97 3 14 chr6 107099483 107100134 -75315108 - HERV9 LTR ERV1 0 8399 7756 2525 147 151 76 chr6 107100128 107100947 -75314295 - Harlequin LTR ERV1 -5176 1720 840 * 29102 86 10 6 chr6 107100948 107104783 -75310459 - Harlequin LTR ERV1 -3455 4944 1093 6762 88 1 8 chr6 107104780 107105666 -75309576 - Harlequin LTR ERV1 -7480 919 40 * 5044 65 85 120 chr6 107105679 107106535 -75308707 - LTR12 LTR ERV1 0 826 1 346 331 8 8 chr6 107106744 107106868 -75308374 + MIR SINE MIR 33 156 -106 342 183 0 0 chr6 107106870 107106941 -75308301 + (TGG)n Simple_repeat Simple_repeat 1 71 0 364 264 41 16 chr6 107106980 107107101 -75308141 + MIR SINE MIR 139 262 0 211 242 61 15 chr6 107107205 107107271 -75307971 - MIR3 SINE MIR -15 193 125 1385 153 22 0 chr6 107108948 107109177 -75306065 + MER46A DNA MER2_type 1 234 -2 405 0 0 0 chr6 107109636 107109681 -75305561 + (TG)n Simple_repeat Simple_repeat 2 46 0 2223 95 7 0 chr6 107109681 107109964 -75305278 - AluSp SINE Alu -28 285 1 418 181 34 102 chr6 107111290 107111467 -75303775 + Charlie7 DNA MER1_type 2448 2612 0 23 33 0 0 chr6 107111547 107111577 -75303665 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 107112627 107112655 -75302587 + AT_rich Low_complexity Low_complexity 1 28 0 275 336 60 22 chr6 107114474 107114706 -75300536 - L2 LINE L2 -222 3050 2810 269 344 11 0 chr6 107114875 107114968 -75300274 + L2 LINE L2 3179 3272 0 21 36 0 0 chr6 107116352 107116380 -75298862 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 107117164 107117185 -75298057 + (CAA)n Simple_repeat Simple_repeat 2 22 0 579 241 11 65 chr6 107117928 107118135 -75297107 - MIR SINE MIR -45 217 23 293 208 0 0 chr6 107118115 107118168 -75297074 + L2 LINE L2 3251 3303 -10 * 1135 191 31 132 chr6 107119004 107119391 -75295851 + MLT1A2 LTR MaLR 16 363 -11 21 0 0 0 chr6 107119694 107119715 -75295527 + AT_rich Low_complexity Low_complexity 1 21 0 405 243 133 68 chr6 107120281 107120618 -75294624 - L1ME4a LINE L1 -48 6073 5715 467 211 6 78 chr6 107120636 107120816 -75294426 - L1ME4a LINE L1 0 6121 5955 199 217 48 48 chr6 107121534 107121617 -75293625 - MIR SINE MIR -1 261 179 372 22 0 0 chr6 107122044 107122089 -75293153 + (TG)n Simple_repeat Simple_repeat 1 45 0 2062 128 0 3 chr6 107122120 107122417 -75292825 + AluSq SINE Alu 1 296 -17 1029 255 124 43 chr6 107122479 107122946 -75292296 + L1ME4a LINE L1 5429 5933 -188 217 274 32 0 chr6 107123571 107123633 -75291609 - L2 LINE L2 0 3272 3209 323 301 22 29 chr6 107123650 107123786 -75291456 - L3b LINE CR1 -255 1328 1194 1159 271 106 24 chr6 107124251 107124903 -75290339 + L1ME4a LINE L1 5380 6086 -35 363 350 0 6 chr6 107125737 107125894 -75289348 + (TG)n Simple_repeat Simple_repeat 2 157 0 330 26 0 0 chr6 107126337 107126376 -75288866 + (CA)n Simple_repeat Simple_repeat 2 40 0 456 139 0 0 chr6 107126473 107126552 -75288690 + (TCCA)n Simple_repeat Simple_repeat 2 80 0 450 130 14 0 chr6 107126789 107126858 -75288384 - MER47B DNA MER2_type 0 418 349 1351 206 14 32 chr6 107126858 107127139 -75288103 + AluJo SINE Alu 1 276 -36 305 184 0 26 chr6 107127146 107127222 -75288020 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 1858 208 23 6 chr6 107127222 107127568 -75287674 - MER47B DNA MER2_type -66 352 1 384 22 0 0 chr6 107127591 107127636 -75287606 + (CA)n Simple_repeat Simple_repeat 1 45 0 2255 109 0 0 chr6 107127909 107128203 -75287039 + AluSx SINE Alu 1 294 -18 2274 106 0 7 chr6 107128297 107128599 -75286643 - AluSg SINE Alu -10 300 1 21 0 0 0 chr6 107129718 107129739 -75285503 + AT_rich Low_complexity Low_complexity 1 21 0 500 296 41 21 chr6 107130054 107130255 -75284987 + MIR SINE MIR 20 224 -38 2173 108 7 0 chr6 107130308 107130596 -75284646 - AluSx SINE Alu -22 290 1 606 14 0 0 chr6 107131155 107131226 -75284016 + (TG)n Simple_repeat Simple_repeat 1 71 0 218 254 0 99 chr6 107132407 107132478 -75282764 - MIR SINE MIR -123 85 22 367 66 82 0 chr6 107132798 107132859 -75282383 - L1MD3 LINE L1 0 7995 7930 1340 193 81 34 chr6 107132864 107133185 -75282057 + MLT2D LTR ERVL 79 414 0 2110 185 66 4 chr6 107133185 107133640 -75281602 - L1MC4a LINE L1 -449 7359 6877 395 224 149 9 chr6 107135431 107135538 -75279704 + MER5A DNA MER1_type 29 150 -39 200 255 21 0 chr6 107135542 107135589 -75279653 - MER5A DNA MER1_type 0 189 142 246 195 0 0 chr6 107135621 107135662 -75279580 + MER5A DNA MER1_type 149 189 0 910 177 10 79 chr6 107135675 107135723 -75279519 - MER5A DNA MER1_type 0 189 139 729 200 7 22 chr6 107135723 107135858 -75279384 - FLAM_A SINE Alu 0 133 1 910 177 10 79 chr6 107135858 107136012 -75279230 - MER5A DNA MER1_type -50 139 1 320 271 161 64 chr6 107136348 107136566 -75278676 - L3 LINE CR1 -46 1531 1293 626 53 0 0 chr6 107138895 107138971 -75276271 + L1MA2 LINE L1 6229 6304 0 1468 219 76 82 chr6 107139396 107139863 -75275379 - MLT1F1 LTR MaLR 0 567 106 2274 120 0 0 chr6 107139863 107140171 -75275071 + AluSx SINE Alu 1 308 -4 1468 219 76 82 chr6 107140171 107140277 -75274965 - MLT1F1 LTR MaLR -461 106 1 251 283 17 133 chr6 107140711 107140831 -75274411 + L2 LINE L2 3150 3255 -17 2173 102 3 34 chr6 107141489 107141812 -75273430 + AluSq SINE Alu 1 313 0 283 304 0 0 chr6 107142155 107142224 -75273018 - L2 LINE L2 -4 3309 3241 209 329 236 25 chr6 107142478 107142800 -75272442 - L2 LINE L2 -353 2961 2572 432 245 27 98 chr6 107142889 107143073 -75272169 + MIR SINE MIR 22 192 -70 190 91 91 0 chr6 107143168 107143223 -75272019 + (TA)n Simple_repeat Simple_repeat 1 60 0 208 204 0 23 chr6 107143279 107143323 -75271919 + MIR SINE MIR 219 261 -1 1065 333 53 4 chr6 107143346 107143805 -75271437 - L2 LINE L2 -34 3279 2792 330 286 60 21 chr6 107143823 107144057 -75271185 - L2 LINE L2 -842 2472 2230 598 199 237 0 chr6 107144204 107144360 -75270882 + MIR SINE MIR 48 240 -22 2089 111 24 0 chr6 107145504 107145792 -75269450 + AluSq SINE Alu 1 295 -18 243 355 18 27 chr6 107145941 107146051 -75269191 + L1MC/D LINE L1 5549 5657 -2151 390 237 23 121 chr6 107147859 107148032 -75267210 - MER5B DNA MER1_type -22 156 1 2211 98 0 0 chr6 107148791 107149105 -75266137 + AluSg SINE Alu 8 321 0 465 288 104 61 chr6 107149105 107149577 -75265665 - L3 LINE CR1 -6 1571 1080 248 340 175 0 chr6 107149592 107149786 -75265456 - L2 LINE L2 -9 3263 3036 348 262 85 64 chr6 107150432 107150500 -75264742 - L1MC/D LINE L1 -744 5402 5337 1942 160 0 0 chr6 107150500 107150806 -75264436 + AluJo SINE Alu 1 306 -6 348 262 85 64 chr6 107150806 107151334 -75263908 - L1MC/D LINE L1 -809 5337 4860 241 252 50 144 chr6 107151341 107151480 -75263762 + L2 LINE L2 2303 2453 -861 969 194 11 17 chr6 107151480 107151655 -75263587 - FAM SINE Alu -1 174 1 241 252 50 144 chr6 107151655 107151856 -75263386 + L2 LINE L2 2453 2611 -703 1201 129 6 0 chr6 107151876 107152047 -75263195 + AluJo SINE Alu 95 266 -46 319 312 83 37 chr6 107152100 107152382 -75262860 + L2 LINE L2 2705 3000 -272 2147 138 3 0 chr6 107152441 107152752 -75262490 + AluSx SINE Alu 1 312 0 238 306 81 9 chr6 107152891 107153002 -75262240 + L2 LINE L2 3116 3234 -38 471 299 7 2 chr6 107155029 107155172 -75260070 + MIR SINE MIR 8 148 -60 2446 54 0 3 chr6 107155466 107155750 -75259492 + AluY SINE Alu 1 285 -26 423 0 0 0 chr6 107155750 107155797 -75259445 + (CA)n Simple_repeat Simple_repeat 2 48 0 2446 54 0 3 chr6 107155797 107155809 -75259433 + AluY SINE Alu 285 296 -15 21 0 0 0 chr6 107155952 107155973 -75259269 + AT_rich Low_complexity Low_complexity 1 21 0 563 289 125 10 chr6 107156137 107156345 -75258897 - MIR SINE MIR -3 259 28 2552 55 0 7 chr6 107156605 107156912 -75258330 + AluY SINE Alu 1 305 -6 325 256 26 0 chr6 107157061 107157139 -75258103 - MIR SINE MIR -106 156 77 620 317 64 33 chr6 107157285 107157767 -75257475 - L1MC/D LINE L1 -1772 4374 3878 21 71 0 0 chr6 107157778 107157820 -75257422 + AT_rich Low_complexity Low_complexity 1 42 0 597 178 199 20 chr6 107158425 107158571 -75256671 - MER58C DNA MER1_type 0 215 44 398 271 94 26 chr6 107161500 107161692 -75253550 + L1ME3A LINE L1 5966 6170 0 749 168 0 58 chr6 107161719 107161856 -75253386 - FLAM_A SINE Alu -4 129 1 23 0 0 0 chr6 107161905 107161928 -75253314 + AT_rich Low_complexity Low_complexity 1 23 0 728 179 0 37 chr6 107162390 107162524 -75252718 + FLAM_A SINE Alu 1 129 -4 273 341 155 31 chr6 107163434 107164161 -75251081 - L2 LINE L2 -344 2970 2164 216 259 17 0 chr6 107164574 107164632 -75250610 + CT-rich Low_complexity Low_complexity 2 60 0 193 308 55 70 chr6 107165592 107165683 -75249559 + L2 LINE L2 2804 2895 -377 2136 176 0 8 chr6 107165683 107166047 -75249195 + MLT1A1 LTR MaLR 1 361 -4 193 308 55 70 chr6 107166047 107166267 -75248975 + L2 LINE L2 2895 3110 -162 1542 145 149 0 chr6 107167387 107167649 -75247593 - AluJo SINE Alu -11 301 1 1350 176 75 4 chr6 107170401 107170668 -75244574 + MER58B DNA MER1_type 56 341 0 252 297 34 17 chr6 107171559 107171677 -75243565 - MER5A DNA MER1_type -21 168 49 551 301 75 0 chr6 107171810 107171983 -75243259 - MER91A DNA MER1_type -2 194 9 265 329 15 36 chr6 107172136 107172273 -75242969 + L2 LINE L2 2620 2753 -561 3409 92 139 23 chr6 107172732 107173299 -75241943 + LTR10E LTR ERV1 1 633 0 24 0 0 0 chr6 107173557 107173581 -75241661 + AT_rich Low_complexity Low_complexity 1 24 0 897 121 0 8 chr6 107173581 107173705 -75241537 - FLAM_C SINE Alu -20 123 1 551 129 148 0 chr6 107173789 107173890 -75241352 - FLAM_C SINE Alu -17 116 1 344 270 92 66 chr6 107174102 107174254 -75240988 + MIR SINE MIR 1 156 -106 253 264 0 0 chr6 107174416 107174469 -75240773 + L1MC4 LINE L1 6944 6996 -1046 511 267 33 43 chr6 107174520 107174730 -75240512 + L1MC4 LINE L1 7795 8002 -40 282 181 42 0 chr6 107175144 107175216 -75240026 + L1MD3 LINE L1 7920 7994 -1 24 53 0 0 chr6 107175719 107175757 -75239485 + AT_rich Low_complexity Low_complexity 1 38 0 450 289 56 99 chr6 107177044 107177581 -75237661 + L1MDa LINE L1 1245 1855 -1046 2282 98 3 3 chr6 107177593 107177889 -75237353 - AluSx SINE Alu -16 296 1 255 267 0 0 chr6 107177935 107177995 -75237247 + HAL1 LINE L1 1610 1669 -838 2254 119 10 0 chr6 107178156 107178458 -75236784 - AluSx SINE Alu -7 305 1 432 256 185 63 chr6 107178762 107179400 -75235842 + L1MDa LINE L1 2509 3224 -3316 2288 108 3 0 chr6 107179836 107180133 -75235109 - AluSx SINE Alu -14 298 1 928 237 66 0 chr6 107180907 107181135 -75234107 - MIR SINE MIR -16 246 4 233 301 196 8 chr6 107181532 107181665 -75233577 + MIR SINE MIR 48 205 -57 335 206 11 180 chr6 107182394 107182583 -75232659 - MIR SINE MIR -17 245 89 705 278 58 5 chr6 107182738 107182961 -75232281 - MIR SINE MIR 0 262 28 2147 50 10 63 chr6 107183888 107184188 -75231054 - AluSc SINE Alu -23 286 3 469 250 162 0 chr6 107184237 107184373 -75230869 + MIR SINE MIR 51 208 -54 851 148 0 15 chr6 107184469 107184604 -75230638 + FLAM_C SINE Alu 1 133 -10 1996 160 0 0 chr6 107184609 107184921 -75230321 + AluSx SINE Alu 1 312 0 25 0 0 0 chr6 107186917 107186942 -75228300 + GC_rich Low_complexity Low_complexity 1 25 0 180 185 0 0 chr6 107186964 107187018 -75228224 + (CGG)n Simple_repeat Simple_repeat 2 55 0 2190 121 0 6 chr6 107188943 107189258 -75225984 + AluSq SINE Alu 1 313 0 2028 113 20 33 chr6 107189442 107189744 -75225498 + AluSx SINE Alu 1 298 -14 214 249 41 31 chr6 107190419 107190528 -75224714 - MIR SINE MIR -66 142 67 1174 88 193 0 chr6 107190578 107190770 -75224472 + MER30 DNA MER1_type 1 229 -1 433 123 0 0 chr6 107191203 107191268 -75223974 - MER5A DNA MER1_type -84 105 41 1911 94 0 0 chr6 107192024 107192268 -75222974 - AluSg SINE Alu -8 302 59 182 255 137 0 chr6 107242302 107242353 -75172889 + MIR SINE MIR 92 149 -113 25 31 0 0 chr6 107242790 107242822 -75172420 + AT_rich Low_complexity Low_complexity 1 32 0 2827 16 0 0 chr6 107243341 107243651 -75171591 + AluYb8 SINE Alu 1 310 -8 774 112 80 24 chr6 107243793 107243918 -75171324 - FLAM_A SINE Alu 0 133 2 1759 172 6 44 chr6 107243946 107244266 -75170976 - AluJo SINE Alu -4 308 1 1580 183 42 7 chr6 107244301 107244590 -75170652 + AluJo SINE Alu 1 299 -13 321 68 0 0 chr6 107244600 107244644 -75170598 + L1MC1 LINE L1 6285 6328 -5 2131 129 0 46 chr6 107244832 107245157 -75170085 + AluSx SINE Alu 1 310 -2 1017 205 61 26 chr6 107245195 107245507 -75169735 + L1ME3A LINE L1 5843 6165 -5 1411 209 60 34 chr6 107245534 107245980 -75169262 + L1M4 LINE L1 3743 4200 -1946 188 163 0 20 chr6 107246348 107246397 -75168845 + (TA)n Simple_repeat Simple_repeat 1 48 0 228 86 0 0 chr6 107246609 107246644 -75168598 + (CA)n Simple_repeat Simple_repeat 2 36 0 1654 244 62 39 chr6 107246680 107247242 -75168000 - MER90 LTR ERV1 0 575 1 2166 40 40 79 chr6 107247292 107247595 -75167647 + AluY SINE Alu 1 291 -20 31 26 0 0 chr6 107248663 107248701 -75166541 + AT_rich Low_complexity Low_complexity 1 38 0 809 253 107 17 chr6 107248901 107249257 -75165985 + L1MC4 LINE L1 6785 7172 -870 2220 116 0 13 chr6 107249449 107249752 -75165490 + AluSx SINE Alu 1 299 -13 1999 128 0 58 chr6 107249951 107250264 -75164978 - AluSx SINE Alu -17 295 1 293 53 0 0 chr6 107250615 107250653 -75164589 - Alu SINE Alu -263 39 2 22 0 0 0 chr6 107250917 107250939 -75164303 + AT_rich Low_complexity Low_complexity 1 22 0 249 242 16 0 chr6 107251321 107251383 -75163859 - MIR SINE MIR -61 147 85 2088 129 10 3 chr6 107252281 107252576 -75162666 - AluSx SINE Alu -15 297 1 2271 108 10 0 chr6 107252815 107253110 -75162132 - AluSx SINE Alu -14 298 1 216 0 0 0 chr6 107253272 107253296 -75161946 + (TATG)n Simple_repeat Simple_repeat 2 25 0 2225 101 0 3 chr6 107253296 107253583 -75161659 - AluSq SINE Alu -27 286 1 2231 108 10 0 chr6 107254397 107254694 -75160548 + AluSx SINE Alu 1 300 -12 355 227 182 23 chr6 107255278 107255410 -75159832 - MIR SINE MIR -109 153 1 760 188 50 11 chr6 107255584 107255765 -75159477 + MER105 DNA DNA 1 188 -16 632 208 0 25 chr6 107255950 107256070 -75159172 - FLAM_C SINE Alu -25 118 2 2112 142 16 16 chr6 107256556 107256929 -75158313 - L1MC1 LINE L1 -17 6316 5944 468 302 115 68 chr6 107257432 107258021 -75157221 + L2 LINE L2 2672 3272 0 213 211 77 19 chr6 107258309 107258361 -75156881 - L2 LINE L2 -222 3050 2996 1362 187 89 0 chr6 107258400 107258716 -75156526 + Charlie1b DNA MER1_type 1 344 -179 744 159 8 0 chr6 107258724 107258850 -75156392 - FLAM_C SINE Alu -6 137 11 208 323 75 38 chr6 107259510 107259643 -75155599 + L2 LINE L2 2948 3085 -187 206 310 81 11 chr6 107259810 107259897 -75155345 - MIR SINE MIR -79 129 37 2023 122 14 0 chr6 107259913 107260207 -75155035 - AluSx SINE Alu -14 298 1 237 246 70 0 chr6 107260550 107260607 -75154635 + L2 LINE L2 3212 3272 0 328 318 31 73 chr6 107260917 107261272 -75153970 + L2 LINE L2 2556 2895 -419 260 287 110 49 chr6 107261317 107261481 -75153761 + L2 LINE L2 3118 3291 -22 336 283 0 43 chr6 107261608 107261746 -75153496 + MER77 LTR ERV1 66 197 -408 993 213 109 123 chr6 107261776 107262363 -75152879 + MER21B LTR ERV1 141 719 -144 2676 133 21 7 chr6 107262407 107262829 -75152413 + MSTA LTR MaLR 1 428 0 422 302 156 11 chr6 107262850 107263029 -75152213 - MIR SINE MIR -37 225 21 2248 109 0 16 chr6 107263111 107263414 -75151828 - AluSg SINE Alu -12 298 1 425 289 191 58 chr6 107263756 107263923 -75151319 - L2 LINE L2 -438 2876 2733 2159 126 3 0 chr6 107263923 107264224 -75151018 - AluSx SINE Alu -10 302 1 425 289 191 58 chr6 107264224 107264433 -75150809 - L2 LINE L2 -581 2733 2450 761 154 89 93 chr6 107264493 107264707 -75150535 + MER20 DNA MER1_type 7 219 0 315 146 0 0 chr6 107264776 107264831 -75150411 + L1MC5 LINE L1 7843 7897 -64 1919 108 90 0 chr6 107265168 107265445 -75149797 + AluSx SINE Alu 1 302 -10 842 200 32 16 chr6 107265509 107265694 -75149548 + MER5A DNA MER1_type 1 188 -1 1973 109 66 0 chr6 107266115 107266389 -75148853 - AluSx SINE Alu -16 296 5 227 338 0 14 chr6 107266487 107266561 -75148681 + MER5B DNA MER1_type 5 77 -101 1959 128 3 7 chr6 107266708 107267005 -75148237 + AluSx SINE Alu 1 296 -16 236 218 167 0 chr6 107267682 107267760 -75147482 + MLT1L LTR MaLR 155 245 -370 418 244 69 15 chr6 107267826 107267957 -75147285 + MLT1L LTR MaLR 420 557 -58 652 200 127 0 chr6 107268693 107268898 -75146344 + L1MD2 LINE L1 5891 6121 -238 768 226 23 23 chr6 107269005 107269222 -75146020 - L1MD2 LINE L1 -22 6337 6121 301 183 75 21 chr6 107269228 107269321 -75145921 + L1MEd LINE L1 61 158 -5961 302 262 29 19 chr6 107269469 107269572 -75145670 + L1M4 LINE L1 4576 4679 -1467 1012 203 14 22 chr6 107269632 107269854 -75145388 + MER8 DNA MER2_type 20 239 0 28 0 0 0 chr6 107270057 107270085 -75145157 + AT_rich Low_complexity Low_complexity 1 28 0 1585 198 35 14 chr6 107270232 107270576 -75144666 + MLT1A1 LTR MaLR 4 354 -11 306 209 70 23 chr6 107270871 107270957 -75144285 - L1MC5 LINE L1 -36 7925 7836 285 29 0 0 chr6 107270957 107270991 -75144251 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1803 101 0 13 chr6 107270999 107271237 -75144005 - AluSc SINE Alu -74 235 1 1783 149 0 17 chr6 107271244 107271533 -75143709 - AluJb SINE Alu -24 288 5 399 145 0 0 chr6 107271609 107271678 -75143564 + (TA)n Simple_repeat Simple_repeat 2 70 0 583 235 102 48 chr6 107271680 107272012 -75143230 - L1MC4 LINE L1 -150 7892 7543 305 290 191 8 chr6 107272012 107272143 -75143099 - MER5A DNA MER1_type -23 166 12 225 88 29 0 chr6 107272821 107272855 -75142387 - MLT1I LTR MaLR -291 118 84 234 311 62 28 chr6 107273073 107273250 -75141992 + L2 LINE L2 1292 1474 -1840 864 166 74 0 chr6 107273674 107273837 -75141405 + L1PB4 LINE L1 5975 6149 -7 645 240 52 41 chr6 107273846 107274287 -75140955 - MER68 LTR ERV1 0 562 1 819 245 68 8 chr6 107274553 107274790 -75140452 - MIR SINE MIR -4 258 8 24 32 0 0 chr6 107275295 107275326 -75139916 + GC_rich Low_complexity Low_complexity 1 31 0 2534 42 0 10 chr6 107275555 107275861 -75139381 - AluY SINE Alu -8 303 1 205 281 78 0 chr6 107276341 107276405 -75138837 - L2 LINE L2 -3 3310 3242 2029 127 9 35 chr6 107277211 107277527 -75137715 - AluSx SINE Alu -4 308 1 344 315 78 62 chr6 107277614 107277845 -75137397 - L1MC4a LINE L1 -1742 6066 5827 2417 86 0 0 chr6 107277845 107278146 -75137096 - AluSx SINE Alu -11 301 1 344 315 78 62 chr6 107278146 107278235 -75137007 - L1MC4a LINE L1 -1981 5827 5741 21 0 0 0 chr6 107278450 107278471 -75136771 + AT_rich Low_complexity Low_complexity 1 21 0 2145 93 65 0 chr6 107278515 107278805 -75136437 + AluSx SINE Alu 2 310 -2 27 0 0 0 chr6 107279163 107279190 -75136052 + AT_rich Low_complexity Low_complexity 1 27 0 633 242 102 0 chr6 107279600 107279757 -75135485 - AluJo SINE Alu -20 292 120 2345 178 40 42 chr6 107279849 107280355 -75134887 + MLT1D LTR MaLR 1 505 0 334 301 122 84 chr6 107280850 107281136 -75134106 - L1M2 LINE L1 -5717 1132 836 209 207 35 17 chr6 107281383 107281441 -75133801 - MIR SINE MIR -60 148 90 1759 151 9 25 chr6 107281635 107281952 -75133290 - AluJo SINE Alu 0 312 1 1549 162 70 7 chr6 107281994 107282265 -75132977 + AluJb SINE Alu 5 292 -20 1651 181 0 14 chr6 107282287 107282580 -75132662 + AluJb SINE Alu 6 294 -18 688 153 248 0 chr6 107282785 107282922 -75132320 + AluJb SINE Alu 124 294 -18 2334 114 0 0 chr6 107282945 107283243 -75131999 + AluSx SINE Alu 1 298 -14 365 279 56 25 chr6 107283517 107283678 -75131564 - L1MC4a LINE L1 -2038 5770 5605 418 343 79 6 chr6 107283812 107283990 -75131252 - MIR SINE MIR -52 210 20 2413 76 0 3 chr6 107284025 107284326 -75130916 - AluSg SINE Alu -10 300 1 2350 138 122 10 chr6 107285289 107285791 -75129451 - L1MB4 LINE L1 0 6180 5623 790 37 47 9 chr6 107285881 107285988 -75129254 + HY1 scRNA scRNA 1 111 -1 562 202 9 0 chr6 107286069 107286178 -75129064 + MER119 DNA MER1_type 471 580 -3 734 281 60 22 chr6 107286254 107286760 -75128482 - L1MC/D LINE L1 -716 5438 5275 318 309 88 58 chr6 107286888 107286995 -75128247 - L1MC/D LINE L1 -1021 5125 5023 2407 75 0 0 chr6 107286995 107287289 -75127953 + AluY SINE Alu 1 294 -17 318 309 88 58 chr6 107287289 107287476 -75127766 - L1MC/D LINE L1 -1123 5023 4822 1910 152 3 25 chr6 107287582 107287898 -75127344 - AluJb SINE Alu -3 309 1 22 35 0 0 chr6 107287943 107287972 -75127270 + AT_rich Low_complexity Low_complexity 1 29 0 506 209 98 0 chr6 107287994 107288147 -75127095 - L1MD3 LINE L1 -24 7971 7804 * 1746 198 138 13 chr6 107288131 107288662 -75126580 - L1MC4a LINE L1 -290 7518 6922 1195 203 107 3 chr6 107288699 107289009 -75126233 - MER2 DNA MER2_type -2 342 1 2491 76 0 0 chr6 107289034 107289336 -75125906 + AluSc SINE Alu 1 302 -7 2216 93 21 0 chr6 107289650 107289940 -75125302 - AluSq SINE Alu -17 296 1 1065 164 6 0 chr6 107289940 107290111 -75125131 - AluJb SINE Alu -5 307 136 2402 241 94 18 chr6 107290133 107290866 -75124376 - MER21B LTR ERV1 -54 809 21 409 225 11 11 chr6 107290901 107290990 -75124252 - MER21B LTR ERV1 -773 90 2 29 28 0 0 chr6 107291337 107291373 -75123869 + AT_rich Low_complexity Low_complexity 1 36 0 2337 90 0 0 chr6 107291741 107292030 -75123212 + AluSc SINE Alu 1 289 -20 2137 108 3 20 chr6 107292660 107292943 -75122299 + AluSc SINE Alu 1 280 -29 216 0 0 0 chr6 107292943 107292967 -75122275 + (CA)n Simple_repeat Simple_repeat 1 24 0 2137 108 3 20 chr6 107292967 107292989 -75122253 + AluSc SINE Alu 280 301 -8 685 146 64 114 chr6 107292996 107293063 -75122179 + L1ME2 LINE L1 5954 6023 -141 1590 134 72 34 chr6 107293063 107293354 -75121888 + AluJb SINE Alu 11 312 0 685 146 64 114 chr6 107293354 107293506 -75121736 + L1ME2 LINE L1 6023 6162 -2 375 181 0 0 chr6 107293750 107293822 -75121420 + (TA)n Simple_repeat Simple_repeat 1 72 0 330 130 15 13 chr6 107293832 107293915 -75121327 + L1ME2 LINE L1 6017 6064 -100 1120 220 89 0 chr6 107294240 107294522 -75120720 - MER58B DNA MER1_type -34 307 1 257 193 23 34 chr6 107294658 107294746 -75120496 + L1MCc LINE L1 1376 1462 -4961 267 196 10 82 chr6 107294762 107294859 -75120383 + L1MCc LINE L1 1737 1826 -5105 238 272 87 0 chr6 107294846 107294938 -75120304 + L1ME LINE L1 5813 5912 -258 * 1818 189 0 0 chr6 107294940 107295246 -75119996 - AluJo SINE Alu -6 306 1 22 0 0 0 chr6 107295309 107295331 -75119911 + AT_rich Low_complexity Low_complexity 1 22 0 519 60 0 0 chr6 107295678 107295745 -75119497 + (TA)n Simple_repeat Simple_repeat 1 67 0 2401 95 0 7 chr6 107295747 107296053 -75119189 - AluY SINE Alu -7 304 1 600 113 0 0 chr6 107296053 107296150 -75119092 - AluSg/x SINE Alu -6 303 207 1793 133 75 0 chr6 107296195 107296473 -75118769 - AluJb SINE Alu -13 299 1 21 36 0 0 chr6 107297112 107297140 -75118102 + AT_rich Low_complexity Low_complexity 1 28 0 1920 101 10 47 chr6 107297140 107297292 -75117950 - AluSx SINE Alu -25 287 150 2432 77 3 0 chr6 107297292 107297590 -75117652 - AluSp SINE Alu -14 299 1 1920 101 10 47 chr6 107297590 107297735 -75117507 - AluSx SINE Alu -162 150 1 276 265 24 0 chr6 107297776 107297859 -75117383 + MIR SINE MIR 138 222 -40 600 259 113 70 chr6 107297998 107298387 -75116855 + HAL1 LINE L1 512 929 -1578 1820 130 121 3 chr6 107298387 107298710 -75116532 - MER46B DNA MER2_type 0 236 1 600 259 113 70 chr6 107298710 107298822 -75116420 + HAL1 LINE L1 929 1035 -1472 1495 201 48 4 chr6 107298835 107299104 -75116138 + AluJo SINE Alu 1 281 -31 291 266 97 59 chr6 107299286 107299606 -75115636 + HAL1 LINE L1 1981 2312 -195 733 142 35 0 chr6 107299699 107299812 -75115430 - FLAM_C SINE Alu -16 117 1 420 228 197 28 chr6 107299828 107300007 -75115235 + MIR SINE MIR 45 252 -10 282 227 45 78 chr6 107300020 107300149 -75115093 + HAL1 LINE L1 2326 2451 -56 1073 147 107 40 chr6 107300149 107300167 -75115075 - MER33 DNA MER1_type -2261 324 309 2175 103 0 32 chr6 107300167 107300478 -75114764 - AluSq SINE Alu -12 301 1 1073 147 107 40 chr6 107300478 107300759 -75114483 - MER33 DNA MER1_type -2276 309 5 282 227 45 78 chr6 107300759 107300783 -75114459 + HAL1 LINE L1 2451 2474 -33 1361 211 103 54 chr6 107300920 107301126 -75114116 + L1MC5 LINE L1 7302 7496 -465 1981 139 7 3 chr6 107301126 107301429 -75113813 + AluSx SINE Alu 1 304 -8 1361 211 103 54 chr6 107301429 107301794 -75113448 + L1MC5 LINE L1 7496 7901 -60 21 0 0 0 chr6 107304755 107304776 -75110466 + AT_rich Low_complexity Low_complexity 1 21 0 181 200 46 77 chr6 107305617 107305682 -75109560 + MER5B DNA MER1_type 33 95 -83 2225 107 10 0 chr6 107305759 107306050 -75109192 - AluSx SINE Alu -18 294 1 1026 182 91 0 chr6 107307342 107307540 -75107702 - MER20 DNA MER1_type -2 217 2 373 348 82 37 chr6 107307689 107308017 -75107225 - L2 LINE L2 -798 2516 2174 238 273 163 17 chr6 107308024 107308196 -75107046 - MER117 DNA MER1_type 0 197 1 2136 91 45 3 chr6 107308321 107308608 -75106634 + AluSx SINE Alu 5 303 -9 458 327 116 10 chr6 107308627 107308826 -75106416 - MIR SINE MIR -9 253 34 436 314 17 11 chr6 107311269 107311444 -75103798 - MER5B DNA MER1_type 0 178 3 21 0 0 0 chr6 107311686 107311707 -75103535 + AT_rich Low_complexity Low_complexity 1 21 0 265 182 223 33 chr6 107312073 107312194 -75103048 + L1ME4a LINE L1 5956 6099 -22 21 0 0 0 chr6 107312198 107312219 -75103023 + AT_rich Low_complexity Low_complexity 1 21 0 2195 110 10 0 chr6 107312545 107312845 -75102397 + AluSx SINE Alu 1 303 -9 627 124 0 0 chr6 107313535 107313632 -75101610 + MLT1A2 LTR MaLR 278 374 0 7369 151 59 16 chr6 107313638 107315071 -75100171 - L1MC3 LINE L1 -87 7698 6205 1700 200 0 20 chr6 107315221 107315526 -75099716 - AluJo SINE Alu -13 299 1 1090 136 100 3 chr6 107315994 107316211 -75099031 - L1MB2 LINE L1 -121 6059 5824 454 118 0 29 chr6 107316321 107316389 -75098853 + AluS SINE Alu 2 66 -246 1996 93 63 0 chr6 107316440 107316708 -75098534 + AluSx SINE Alu 1 285 -27 218 186 0 0 chr6 107317124 107317167 -75098075 + (ATG)n Simple_repeat Simple_repeat 2 44 0 1375 180 149 53 chr6 107317187 107317309 -75097933 + MLT1B LTR MaLR 1 110 -280 2116 99 58 3 chr6 107317309 107317603 -75097639 + AluSg SINE Alu 1 310 0 1375 180 149 53 chr6 107317603 107317836 -75097406 + MLT1B LTR MaLR 110 390 0 306 206 73 0 chr6 107317840 107317908 -75097334 - MIR SINE MIR -35 227 155 1144 144 139 5 chr6 107318478 107318686 -75096556 - MER46A DNA MER2_type 0 236 1 31 26 0 0 chr6 107318721 107318759 -75096483 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr6 107319435 107319457 -75095785 + AT_rich Low_complexity Low_complexity 1 22 0 2239 126 0 0 chr6 107319502 107319804 -75095438 - AluSx SINE Alu -10 302 1 740 282 40 0 chr6 107320771 107320973 -75094269 + MIR SINE MIR 2 211 -51 22 35 0 0 chr6 107321788 107321817 -75093425 + AT_rich Low_complexity Low_complexity 1 29 0 1768 138 134 0 chr6 107321847 107322108 -75093134 - AluSx SINE Alu -5 297 2 441 180 29 86 chr6 107322988 107323127 -75092115 + MER104 DNA Tc2 48 178 -2 225 174 290 0 chr6 107323366 107323435 -75091807 - L1MC/D LINE L1 -1986 5822 5734 323 299 96 37 chr6 107323734 107323927 -75091315 - L1MC/D LINE L1 -2107 5701 5521 2254 116 7 0 chr6 107323927 107324229 -75091013 + AluSx SINE Alu 1 304 -8 323 299 96 37 chr6 107324229 107324440 -75090802 - L1MC/D LINE L1 -2287 5521 5273 266 250 0 0 chr6 107324674 107324734 -75090508 - L1P LINE L1 -1135 5011 4952 337 207 95 62 chr6 107324883 107325062 -75090180 - L1MC/D LINE L1 -1418 4728 4544 266 278 56 28 chr6 107325668 107325776 -75089466 - L1P LINE L1 -2455 3691 3581 229 211 183 0 chr6 107326515 107326586 -75088656 - HsTC2 DNA Tc2 0 1898 1815 * 354 117 50 0 chr6 107326584 107326644 -75088598 - HsTC2 DNA Tc2 -1835 63 1 294 206 0 0 chr6 107327163 107327226 -75088016 + (CA)n Simple_repeat Simple_repeat 2 64 0 2367 83 0 10 chr6 107328894 107329206 -75086036 - AluSc SINE Alu 0 309 1 1791 132 30 34 chr6 107329208 107329503 -75085739 - AluSx SINE Alu -18 294 1 2516 60 0 3 chr6 107329515 107329816 -75085426 - AluSc SINE Alu -9 300 1 643 14 0 0 chr6 107329822 107329894 -75085348 - AluYa5/8 SINE Alu -12 298 227 202 182 0 0 chr6 107330349 107330382 -75084860 + (CA)n Simple_repeat Simple_repeat 2 34 0 2158 130 0 0 chr6 107330429 107330730 -75084512 + AluSx SINE Alu 4 304 -8 2255 96 7 0 chr6 107331109 107331411 -75083831 + AluSg SINE Alu 1 304 -6 2556 56 0 0 chr6 107331491 107331796 -75083446 + AluY SINE Alu 1 305 -6 28 29 0 0 chr6 107331796 107331831 -75083411 + AT_rich Low_complexity Low_complexity 1 35 0 1722 101 122 66 chr6 107332023 107332311 -75082931 - AluSx SINE Alu -7 305 2 376 219 95 9 chr6 107332384 107332489 -75082753 - MER69 DNA AcHobo -33 2493 2380 322 205 64 0 chr6 107332611 107332689 -75082553 - MER69 DNA AcHobo -2443 83 1 1412 93 33 5 chr6 107333037 107333251 -75081991 - L1MA3 LINE L1 0 6305 6086 21 36 0 0 chr6 107333539 107333567 -75081675 + AT_rich Low_complexity Low_complexity 1 28 0 1930 160 75 52 chr6 107333704 107333755 -75081487 - MSTD LTR MaLR 0 396 348 2762 152 4 22 chr6 107333755 107334208 -75081034 - MER65A LTR ERV1 0 445 1 1930 160 75 52 chr6 107334208 107334543 -75080699 - MSTD LTR MaLR -48 348 1 925 236 70 0 chr6 107334543 107334784 -75080458 + MIR SINE MIR 5 262 0 334 111 458 0 chr6 107335390 107335462 -75079780 - MLT1D LTR MaLR 0 505 401 1438 232 41 46 chr6 107336328 107336742 -75078500 - MLT1D LTR MaLR -93 412 1 886 139 0 16 chr6 107337081 107337210 -75078032 - FLAM_C SINE Alu -4 129 3 270 279 0 47 chr6 107337940 107338026 -75077216 + MER5B DNA MER1_type 3 84 -94 513 199 18 70 chr6 107338161 107338172 -75077070 + L1MC3 LINE L1 6940 6950 -835 2250 156 164 45 chr6 107338172 107338634 -75076608 - MLT2B1 LTR ERVL 0 520 4 513 199 18 70 chr6 107338634 107338793 -75076449 + L1MC3 LINE L1 6950 7101 -684 396 220 11 11 chr6 107338796 107338884 -75076358 + MLT1L LTR MaLR 43 130 -443 419 183 3 40 chr6 107338884 107339483 -75075759 + L1MD1 LINE L1 6112 6731 -1254 2116 150 96 10 chr6 107339483 107339877 -75075365 + MSTA LTR MaLR 1 428 0 419 183 3 40 chr6 107339877 107339893 -75075349 + L1MD1 LINE L1 6731 7985 0 2005 115 3 49 chr6 107339902 107340207 -75075035 + AluSx SINE Alu 1 291 -21 233 204 0 0 chr6 107340210 107340264 -75074978 + L1MC4 LINE L1 6649 6702 -1340 235 235 71 0 chr6 107340274 107340359 -75074883 + L1MC4 LINE L1 6615 6705 -1337 180 0 0 0 chr6 107340359 107340379 -75074863 + (TG)n Simple_repeat Simple_repeat 2 21 0 450 174 61 10 chr6 107340453 107340551 -75074691 + MLT1L LTR MaLR 168 270 -345 1003 175 19 62 chr6 107340629 107340840 -75074402 + MER20 DNA MER1_type 14 215 -4 260 286 42 42 chr6 107340884 107341003 -75074239 + MLT1L LTR MaLR 409 527 -88 2164 106 7 0 chr6 107341469 107341773 -75073469 - AluSp SINE Alu 0 306 1 26 0 0 0 chr6 107341783 107341809 -75073433 + AT_rich Low_complexity Low_complexity 1 26 0 1518 145 8 154 chr6 107341907 107342237 -75073005 + AluJb SINE Alu 1 279 -23 207 0 0 0 chr6 107342237 107342260 -75072982 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1518 145 8 154 chr6 107342260 107342280 -75072962 + AluJb SINE Alu 279 300 -2 1042 181 12 0 chr6 107342293 107342453 -75072789 + FRAM SINE Alu 1 162 -4 2208 78 0 14 chr6 107342476 107342798 -75072444 + AluSc SINE Alu 1 318 0 513 254 0 8 chr6 107343378 107343504 -75071738 - MIR SINE MIR -57 205 81 1967 99 16 160 chr6 107343510 107343712 -75071530 - Tigger1 DNA MER2_type -3 2415 2186 2292 107 0 0 chr6 107343712 107344012 -75071230 + AluSc SINE Alu 6 305 -4 1967 99 16 160 chr6 107344012 107344053 -75071189 - Tigger1 DNA MER2_type -232 2186 2141 2025 143 0 3 chr6 107344053 107344340 -75070902 - AluSx SINE Alu -26 286 1 1967 99 16 160 chr6 107344340 107344519 -75070723 - Tigger1 DNA MER2_type -277 2141 2053 410 52 0 17 chr6 107344696 107344754 -75070488 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 3246 125 12 57 chr6 107344754 107345259 -75069983 - Tigger1 DNA MER2_type -347 2071 1592 2044 146 3 0 chr6 107345259 107345554 -75069688 - AluJb SINE Alu -16 296 1 3246 125 12 57 chr6 107345554 107345608 -75069634 - Tigger1 DNA MER2_type -826 1592 1537 * 5719 139 99 20 chr6 107345606 107346582 -75068660 - Tigger1 DNA MER2_type -1344 1074 22 553 196 122 9 chr6 107347624 107347731 -75067511 - FLAM_A SINE Alu -14 119 1 1396 134 0 9 chr6 107348004 107348221 -75067021 + MSTA LTR MaLR 203 417 -11 211 271 0 0 chr6 107348289 107348337 -75066905 + L2 LINE L2 3264 3311 -2 237 254 16 16 chr6 107348340 107348403 -75066839 - L2 LINE L2 -16 3297 3235 579 168 106 0 chr6 107349878 107349991 -75065251 + FLAM_A SINE Alu 4 128 -5 971 269 65 47 chr6 107351947 107352334 -75062908 - MLT1L LTR MaLR -197 418 25 452 259 95 23 chr6 107352517 107352915 -75062327 - MLT1H LTR MaLR -8 558 26 30 27 0 0 chr6 107353117 107353154 -75062088 + AT_rich Low_complexity Low_complexity 1 37 0 2174 172 14 56 chr6 107354124 107354374 -75060868 + MSTD LTR MaLR 1 229 -167 2218 96 13 10 chr6 107354374 107354675 -75060567 - AluSp SINE Alu -11 302 1 2174 172 14 56 chr6 107354675 107354837 -75060405 + MSTD LTR MaLR 229 396 0 976 240 132 59 chr6 107355210 107355618 -75059624 - MLT1J LTR MaLR -52 459 22 666 344 90 19 chr6 107355677 107356142 -75059100 + LTR67 LTR ERVL 38 535 -22 1857 164 25 82 chr6 107356144 107356546 -75058696 - MLT1B LTR MaLR 0 390 12 981 161 58 112 chr6 107357141 107357265 -75057977 - L1MC5 LINE L1 -32 7929 7800 976 164 159 0 chr6 107357265 107357454 -75057788 + MER20 DNA MER1_type 1 219 0 981 161 58 112 chr6 107357454 107357659 -75057583 - L1MC5 LINE L1 -161 7800 7618 761 215 134 0 chr6 107357661 107357833 -75057409 - MLT1F1 LTR MaLR -372 195 1 1334 217 23 84 chr6 107357836 107358310 -75056932 - L1MC5 LINE L1 -441 7520 7076 675 274 37 0 chr6 107358515 107358679 -75056563 - MIR SINE MIR -92 170 1 348 322 92 7 chr6 107358761 107358913 -75056329 + MIR SINE MIR 24 188 -74 4001 163 77 41 chr6 107358966 107359341 -75055901 + L1MB8 LINE L1 5287 5647 -531 2105 140 0 10 chr6 107359341 107359655 -75055587 + AluSx SINE Alu 1 311 -1 4001 163 77 41 chr6 107359655 107359686 -75055556 + L1MB8 LINE L1 5647 5675 -503 204 97 0 0 chr6 107359686 107359717 -75055525 + (CA)n Simple_repeat Simple_repeat 2 32 0 4001 163 77 41 chr6 107359717 107360170 -75055072 + L1MB8 LINE L1 5675 6178 0 801 171 49 0 chr6 107361087 107361210 -75054032 - FLAM_C SINE Alu -13 130 2 234 254 45 0 chr6 107361233 107361300 -75053942 - L1MC4a LINE L1 -1659 6149 6080 1114 140 103 111 chr6 107361563 107361834 -75053408 + AluJb SINE Alu 1 269 -43 181 333 81 11 chr6 107365009 107365096 -75050146 - MIR SINE MIR -112 150 58 534 247 83 0 chr6 107368767 107368920 -75046322 - MIR SINE MIR -65 143 21 1973 144 7 3 chr6 107369393 107369699 -75045543 + AluJb SINE Alu 6 312 0 25 51 0 0 chr6 107371930 107371969 -75043273 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr6 107373409 107373440 -75041802 + GC_rich Low_complexity Low_complexity 1 31 0 197 29 0 86 chr6 107373473 107373508 -75041734 + (CCA)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chr6 107373533 107373553 -75041689 + (CCG)n Simple_repeat Simple_repeat 2 21 0 236 185 0 19 chr6 107374062 107374116 -75041126 + (CGG)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr6 107376975 107376996 -75038246 + AT_rich Low_complexity Low_complexity 1 21 0 1102 174 12 0 chr6 107376996 107377163 -75038079 + FAM SINE Alu 1 169 -6 632 217 106 21 chr6 107377753 107377942 -75037300 + MIR SINE MIR 40 244 -18 695 233 0 0 chr6 107380632 107380765 -75034477 - FLAM_A SINE Alu 0 133 1 785 157 0 30 chr6 107381504 107381638 -75033604 + FLAM_C SINE Alu 4 133 0 2799 69 29 3 chr6 107381833 107382179 -75033063 + THE1A LTR MaLR 1 355 0 280 279 13 0 chr6 107382189 107382268 -75032974 + MER69 DNA AcHobo 2447 2526 0 730 242 69 58 chr6 107382280 107382640 -75032602 - L1MC4a LINE L1 -1800 6008 5645 699 259 40 116 chr6 107383869 107383936 -75031306 - L2 LINE L2 -23 3249 3178 1473 171 96 0 chr6 107383936 107384217 -75031025 + AluJo SINE Alu 1 308 -4 699 259 40 116 chr6 107384217 107384597 -75030645 - L2 LINE L2 -94 3178 2836 699 287 5 28 chr6 107384612 107384828 -75030414 + MIR SINE MIR 3 213 -49 319 321 98 21 chr6 107384965 107385158 -75030084 - L2 LINE L2 -647 2667 2460 2102 141 3 0 chr6 107385618 107385916 -75029326 + AluSx SINE Alu 1 299 -13 22 35 0 0 chr6 107385975 107386004 -75029238 + AT_rich Low_complexity Low_complexity 1 29 0 7561 51 2 4 chr6 107386240 107387895 -75027347 + L1PA7 LINE L1 4465 6151 -3 252 232 51 7 chr6 107388343 107388481 -75026761 + (TA)n Simple_repeat Simple_repeat 2 145 0 303 240 98 44 chr6 107388936 107389119 -75026123 - L1MC4 LINE L1 -138 7904 7712 288 0 0 0 chr6 107389565 107389597 -75025645 + (T)n Simple_repeat Simple_repeat 1 32 0 1072 171 51 167 chr6 107389922 107390532 -75024710 - L1MC5 LINE L1 -288 7673 7135 420 83 0 56 chr6 107392382 107392454 -75022788 + Alu SINE Alu 245 312 0 21 0 0 0 chr6 107392456 107392477 -75022765 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 107392546 107392576 -75022666 + AT_rich Low_complexity Low_complexity 1 30 0 228 333 0 24 chr6 107392759 107392843 -75022399 - L2 LINE L2 -614 2700 2619 199 387 65 16 chr6 107393442 107393566 -75021676 + L2 LINE L2 3138 3267 -5 472 171 9 36 chr6 107393668 107393779 -75021463 - MIR SINE MIR -31 231 124 872 309 107 34 chr6 107393822 107394685 -75020557 - L2 LINE L2 -4 3309 2367 387 347 116 40 chr6 107394920 107395566 -75019676 - L2 LINE L2 -2412 902 208 1037 269 45 11 chr6 107395781 107396146 -75019096 + L1MC4 LINE L1 7348 7811 -184 2536 110 28 28 chr6 107396159 107396523 -75018719 - THE1B LTR MaLR 0 364 1 9580 89 15 150 chr6 107396523 107396821 -75018421 - THE1B-int LTR MaLR 0 1580 1244 1324 96 0 0 chr6 107396821 107396988 -75018254 - AluSp SINE Alu -4 309 143 9580 89 15 150 chr6 107396988 107398348 -75016894 - THE1B-int LTR MaLR -336 1244 1 2656 106 28 8 chr6 107398348 107398705 -75016537 - THE1B LTR MaLR 0 364 1 446 243 32 96 chr6 107398707 107398925 -75016317 + L1MC4 LINE L1 7708 7911 -131 48 32 0 0 chr6 107399080 107399142 -75016100 + AT_rich Low_complexity Low_complexity 1 62 0 572 159 9 26 chr6 107399856 107399969 -75015273 - MSTA LTR MaLR -317 111 1 21 36 0 0 chr6 107400466 107400494 -75014748 + AT_rich Low_complexity Low_complexity 1 28 0 873 65 19 0 chr6 107402024 107402131 -75013111 - HY1 scRNA scRNA -2 110 2 489 279 0 48 chr6 107402803 107402950 -75012292 + MIR SINE MIR 82 221 -41 5142 140 51 6 chr6 107403034 107403169 -75012073 + L1MA8 LINE L1 5347 5474 -817 2209 140 3 0 chr6 107403169 107403477 -75011765 + AluSx SINE Alu 1 309 -3 5142 140 51 6 chr6 107403477 107404220 -75011022 + L1MA8 LINE L1 5474 6265 -26 1796 167 17 6 chr6 107404450 107404809 -75010433 - Charlie5 DNA MER1_type -16 2596 2234 2466 136 8 19 chr6 107404810 107405178 -75010064 - THE1B LTR MaLR 0 364 1 188 83 0 28 chr6 107405187 107405223 -75010019 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 434 139 28 0 chr6 107405223 107405295 -75009947 - Charlie5 DNA MER1_type -2529 83 10 1379 164 9 14 chr6 107406501 107406720 -75008522 + MER20 DNA MER1_type 1 218 -1 435 260 193 17 chr6 107407453 107407634 -75007608 + L3 LINE CR1 1360 1572 -5 2036 99 4 0 chr6 107408945 107409207 -75006035 - AluSp SINE Alu -50 263 1 22 0 0 0 chr6 107409289 107409311 -75005931 + AT_rich Low_complexity Low_complexity 1 22 0 7422 41 9 35 chr6 107409320 107410826 -75004416 - SVA Other Other -840 1380 32 258 32 0 0 chr6 107410831 107410862 -75004380 + (AGGGGG)n Simple_repeat Simple_repeat 2 32 0 876 212 26 40 chr6 107411690 107411821 -75003421 + L1MA9 LINE L1 6052 6180 -132 2804 153 19 0 chr6 107411821 107412240 -75003002 + MSTA LTR MaLR 2 428 0 876 212 26 40 chr6 107412240 107412334 -75002908 + L1MA9 LINE L1 6180 6274 -38 373 386 88 16 chr6 107412353 107412728 -75002514 + L2 LINE L2 2621 3024 -289 189 231 0 0 chr6 107412825 107412864 -75002378 + MIR SINE MIR 140 178 -84 22 0 0 0 chr6 107413086 107413108 -75002134 + AT_rich Low_complexity Low_complexity 1 22 0 7029 51 3 0 chr6 107413370 107414942 -75000300 - L1PA5 LINE L1 -48 6106 4529 26359 51 1 1 chr6 107414943 107418196 -74997046 + L1PA5 LINE L1 1287 4541 -1605 215 137 59 0 chr6 107418842 107418893 -74996349 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 316 267 19 9 chr6 107419386 107419491 -74995751 - L1MC5 LINE L1 -50 7911 7806 2138 141 7 0 chr6 107420705 107421011 -74994231 - AluSx SINE Alu -4 308 1 2065 106 35 0 chr6 107421357 107421641 -74993601 + AluSx SINE Alu 1 294 -18 621 247 6 0 chr6 107422553 107422711 -74992531 - MER103 DNA DNA -6 160 2 581 345 41 59 chr6 107423645 107423984 -74991258 - L2 LINE L2 -17 3255 2923 3296 136 23 4 chr6 107424312 107424833 -74990409 - LTR26B LTR ERV1 0 531 1 264 328 8 67 chr6 107424964 107425083 -74990159 - L2 LINE L2 -43 3229 3118 641 224 8 0 chr6 107427238 107427363 -74987879 - FLAM_A SINE Alu -7 126 1 2255 100 10 3 chr6 107428912 107429212 -74986030 + AluSc SINE Alu 1 302 -7 1972 179 0 3 chr6 107429427 107429739 -74985503 + AluSx SINE Alu 1 311 -1 39351 61 3 2 chr6 107430588 107436724 -74978518 - L1PA5 LINE L1 -3 6151 12 497 333 7 20 chr6 107436939 107437089 -74978153 - L2 LINE L2 -4 3268 3121 431 333 106 26 chr6 107437318 107437666 -74977576 - L1MC4 LINE L1 -52 7990 7615 407 248 35 33 chr6 107437821 107437974 -74977268 - L1ME3A LINE L1 -294 5876 5720 392 312 144 19 chr6 107438759 107438974 -74976268 - MIR SINE MIR -13 249 8 1196 137 11 95 chr6 107440541 107440826 -74974416 + MLT1B LTR MaLR 1 261 -129 383 245 0 20 chr6 107440829 107440927 -74974315 - L1MC5 LINE L1 -1104 6857 6762 232 180 40 0 chr6 107441602 107441652 -74973590 + MLT1L LTR MaLR 1 52 -563 571 235 63 59 chr6 107441712 107441950 -74973292 + MLT1L LTR MaLR 196 434 -181 231 36 0 0 chr6 107442614 107442642 -74972600 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 765 243 103 5 chr6 107442702 107442916 -74972326 - MIR SINE MIR -16 246 12 2095 101 10 19 chr6 107443790 107444130 -74971112 + AluSq SINE Alu 1 313 0 265 345 127 28 chr6 107444191 107444333 -74970909 - MER91A DNA MER1_type -37 159 4 196 154 39 0 chr6 107444933 107444985 -74970257 + (TA)n Simple_repeat Simple_repeat 2 55 0 237 191 32 0 chr6 107444992 107445055 -74970187 - L1M4 LINE L1 -889 5257 5193 4793 237 55 18 chr6 107445234 107447241 -74968001 - L1ME1 LINE L1 -5 6230 4121 2314 112 7 0 chr6 107447241 107447546 -74967696 + AluSg SINE Alu 1 307 -3 4793 237 55 18 chr6 107447546 107447864 -74967378 - L1ME1 LINE L1 -2114 4121 3816 1264 228 131 12 chr6 107447875 107448449 -74966793 - L1ME1 LINE L1 -3906 2490 1849 682 144 64 24 chr6 107448449 107448574 -74966668 - FLAM_C SINE Alu -2 131 2 21 0 0 0 chr6 107448599 107448620 -74966622 + AT_rich Low_complexity Low_complexity 1 21 0 21725 150 29 16 chr6 107448625 107451260 -74963982 + L1M1 LINE L1 17 2616 -4949 7215 38 17 2 chr6 107451260 107452458 -74962784 + L1PA4 LINE L1 4944 6155 0 21725 150 29 16 chr6 107452458 107453355 -74961887 + L1M1 LINE L1 2616 3500 -4065 6537 51 12 2 chr6 107453355 107454175 -74961067 + L1PA6 LINE L1 5327 6154 0 21725 150 29 16 chr6 107454175 107454582 -74960660 + L1M1 LINE L1 3500 3900 -3665 2298 128 0 0 chr6 107454582 107454894 -74960348 + AluSq SINE Alu 1 312 -1 21725 150 29 16 chr6 107454894 107456300 -74958942 + L1M1 LINE L1 3900 5443 -2122 2387 213 25 57 chr6 107456298 107456899 -74958343 - L1M1 LINE L1 -6970 595 14 * 365 306 68 15 chr6 107456898 107457130 -74958112 - L1ME1 LINE L1 -4757 1639 1382 * 387 0 0 0 chr6 107457130 107457173 -74958069 + (TG)n Simple_repeat Simple_repeat 1 43 0 365 306 68 15 chr6 107457173 107457277 -74957965 - L1ME1 LINE L1 -5014 1382 1285 4984 200 35 22 chr6 107457278 107458192 -74957050 - L1MB2 LINE L1 -3 6404 5503 2233 114 3 0 chr6 107458192 107458491 -74956751 - AluSp SINE Alu -13 300 1 4984 200 35 22 chr6 107458491 107459340 -74955902 - L1MB2 LINE L1 -904 5503 4666 2097 158 0 0 chr6 107459340 107459644 -74955598 - AluSx SINE Alu -8 304 1 4984 200 35 22 chr6 107459644 107459773 -74955469 - L1MB2 LINE L1 -1741 4666 4540 324 0 0 0 chr6 107459773 107459809 -74955433 + (TG)n Simple_repeat Simple_repeat 1 36 0 4984 200 35 22 chr6 107459809 107460080 -74955162 - L1MB2 LINE L1 -1867 4540 4221 820 248 28 14 chr6 107460081 107460295 -74954947 - AluJo SINE Alu -8 304 88 4810 238 36 13 chr6 107460296 107461896 -74953346 - L1MB2 LINE L1 -2163 4219 2584 13611 90 8 12 chr6 107461916 107467906 -74947336 + L1PA6 LINE L1 11 6154 0 7041 163 69 17 chr6 107467906 107469638 -74945604 - L1MB2 LINE L1 -3786 2596 769 1353 220 45 53 chr6 107469695 107469915 -74945327 - L1MCc LINE L1 -5939 484 264 1750 177 17 3 chr6 107469915 107470215 -74945027 - AluJb SINE Alu -8 304 1 1353 220 45 53 chr6 107470215 107470466 -74944776 - L1MCc LINE L1 -6159 264 17 2230 107 0 7 chr6 107470479 107470779 -74944463 - AluSx SINE Alu -14 298 1 970 331 84 25 chr6 107470967 107471646 -74943596 - L2 LINE L2 -2293 1021 303 311 335 123 12 chr6 107472709 107472879 -74942363 + MIR3 SINE MIR 19 207 -1 388 274 35 9 chr6 107473236 107473349 -74941893 - MIR SINE MIR -13 249 134 1617 201 21 3 chr6 107473368 107473528 -74941714 - AluJb SINE Alu -18 294 125 183 42 0 0 chr6 107473528 107473552 -74941690 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1617 201 21 3 chr6 107473552 107473680 -74941562 - AluJb SINE Alu -187 125 1 21 0 0 0 chr6 107473932 107473953 -74941289 + AT_rich Low_complexity Low_complexity 1 21 0 530 75 0 0 chr6 107474198 107474278 -74940964 - L1PA15 LINE L1 0 6165 6086 24 53 0 0 chr6 107474324 107474362 -74940880 + AT_rich Low_complexity Low_complexity 1 38 0 14592 151 25 27 chr6 107474698 107474942 -74940300 - L1MA1 LINE L1 0 7721 7478 2261 109 23 0 chr6 107474942 107475244 -74939998 - AluSq SINE Alu -4 309 1 14592 151 25 27 chr6 107475244 107479523 -74935719 - L1MA1 LINE L1 -243 7478 3203 5648 124 5 0 chr6 107479523 107480849 -74934393 - L1PA14 LINE L1 -9 6152 4807 14592 151 25 27 chr6 107480849 107481186 -74934056 - L1MA1 LINE L1 -4518 3203 2867 1828 141 62 49 chr6 107481186 107481556 -74933686 + THE1C LTR MaLR 1 375 0 1608 94 0 0 chr6 107481559 107481794 -74933448 + THE1C-int LTR MaLR 4 238 -1342 6842 119 47 19 chr6 107481799 107482921 -74932321 + THE1C-int LTR MaLR 427 1580 0 1796 161 52 35 chr6 107482923 107483290 -74931952 + THE1C LTR MaLR 3 375 0 14944 168 32 8 chr6 107483290 107486074 -74929168 - L1MA1 LINE L1 -4694 2871 22 2809 150 6 11 chr6 107486843 107487363 -74927879 - L1MA6 LINE L1 0 6300 5784 1492 154 9 96 chr6 107487510 107487982 -74927260 - L1MA6 LINE L1 -414 5769 5380 1636 190 38 7 chr6 107487982 107488272 -74926970 - AluJb SINE Alu -13 299 1 1492 154 9 96 chr6 107488272 107488361 -74926881 - L1MA6 LINE L1 -803 5380 5285 1217 180 34 26 chr6 107488362 107488595 -74926647 - AluJo SINE Alu -7 305 71 3243 172 5 2 chr6 107488642 107489269 -74925973 - L1MA6 LINE L1 -875 5271 4643 1728 94 0 30 chr6 107489298 107489531 -74925711 - AluSg SINE Alu -26 284 59 3508 97 45 11 chr6 107489657 107490193 -74925049 + L1PA13 LINE L1 5610 6163 0 22 0 0 0 chr6 107490193 107490215 -74925027 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 107490544 107490574 -74924668 + AT_rich Low_complexity Low_complexity 1 30 0 287 241 179 9 chr6 107491523 107491635 -74923607 - MIR SINE MIR -14 248 118 236 338 132 7 chr6 107492434 107492570 -74922672 + MIR3 SINE MIR 43 195 -13 1160 160 32 32 chr6 107494128 107494347 -74920895 - MER20 DNA MER1_type 0 219 1 2063 84 58 4 chr6 107494603 107494877 -74920365 + AluSg SINE Alu 1 289 -21 910 190 6 0 chr6 107494877 107495035 -74920207 + AluJb SINE Alu 134 292 -20 242 363 119 37 chr6 107495623 107495918 -74919324 + L2 LINE L2 2949 3267 -5 200 284 137 29 chr6 107497322 107497424 -74917818 + MIR SINE MIR 40 152 -110 229 246 33 41 chr6 107497489 107497611 -74917631 - L1ME4a LINE L1 -45 6076 5956 244 200 217 9 chr6 107498292 107498407 -74916835 + LTR50 LTR ERVL 9 147 -648 225 188 73 42 chr6 107498573 107498669 -74916573 + LTR50 LTR ERVL 503 601 -194 1372 182 9 42 chr6 107498769 107499099 -74916143 - L1 LINE L1 -3626 2520 2202 * 3925 256 108 24 chr6 107499087 107499982 -74915260 - HAL1 LINE L1 -585 1922 1103 6925 64 0 5 chr6 107499982 107500921 -74914321 - L1PA7 LINE L1 0 6154 5217 3925 256 108 24 chr6 107500921 107501793 -74913449 - HAL1 LINE L1 -1404 1103 8 355 250 0 12 chr6 107502521 107502601 -74912641 + LTR16C LTR ERVL 411 489 -2 1817 168 7 0 chr6 107503755 107504040 -74911202 - AluJo SINE Alu -17 295 9 464 265 152 60 chr6 107504382 107504909 -74910333 + MLT1H1 LTR MaLR 3 583 -12 190 306 180 0 chr6 107504922 107505033 -74910209 - MIR SINE MIR -104 158 28 255 339 35 0 chr6 107505544 107505659 -74909583 - L1M4 LINE L1 -2329 3817 3699 23 33 0 0 chr6 107505915 107505945 -74909297 + AT_rich Low_complexity Low_complexity 1 30 0 2143 128 0 0 chr6 107506675 107506972 -74908270 + AluSx SINE Alu 1 297 -15 2127 191 103 15 chr6 107507000 107507465 -74907777 - MLT2B3 LTR ERVL -46 508 3 645 69 0 0 chr6 107507620 107507707 -74907535 + (GAA)n Simple_repeat Simple_repeat 2 88 0 207 0 0 0 chr6 107507707 107507730 -74907512 + (AGGGGG)n Simple_repeat Simple_repeat 3 25 0 2087 235 44 51 chr6 107507898 107508383 -74906859 - L1M4 LINE L1 -2904 3242 2766 2253 192 29 5 chr6 107508383 107508799 -74906443 - MSTB LTR MaLR 0 426 1 2087 235 44 51 chr6 107508799 107509288 -74905954 - L1M4 LINE L1 -3380 2766 2275 5813 119 15 2 chr6 107509288 107510587 -74904655 - L1PA13 LINE L1 -4 6810 5499 9545 171 18 22 chr6 107510688 107512326 -74902916 - L1PA13 LINE L1 -2654 4143 2516 1576 158 0 15 chr6 107512326 107512586 -74902656 + AluJb SINE Alu 38 293 -19 9545 171 18 22 chr6 107512586 107513317 -74901925 - L1PA13 LINE L1 -4281 2516 1783 10254 58 89 5 chr6 107513421 107514890 -74900352 - L1P LINE L1 -4533 1613 21 242 93 0 23 chr6 107514912 107514955 -74900287 + (CTTTG)n Simple_repeat Simple_repeat 3 44 0 1389 140 0 18 chr6 107515970 107516198 -74899044 - AluY SINE Alu -5 306 83 7185 51 2 3 chr6 107516305 107517292 -74897950 + L1PA5 LINE L1 5168 6154 0 320 206 109 11 chr6 107517368 107517460 -74897782 - MER5C DNA MER1_type 0 324 224 884 309 62 46 chr6 107517510 107517943 -74897299 + L2 LINE L2 2809 3248 -65 400 326 106 38 chr6 107518027 107518450 -74896792 - L2 LINE L2 -1069 2245 1794 1906 176 14 14 chr6 107518463 107518810 -74896432 + MER7A DNA MER2_type 1 345 -1 463 316 55 54 chr6 107519648 107519871 -74895371 + MIR SINE MIR 20 247 -15 588 247 52 0 chr6 107520245 107520399 -74894843 - MER50 LTR ERV1 -570 164 3 259 345 34 0 chr6 107520489 107520608 -74894634 + L2 LINE L2 2935 3057 -215 192 228 22 87 chr6 107520782 107520874 -74894368 + L2 LINE L2 2884 2969 -345 871 200 0 0 chr6 107521172 107521312 -74893930 - MLT2D LTR ERVL -91 323 184 211 381 110 9 chr6 107521721 107521939 -74893303 + L2 LINE L2 2499 2738 -576 1562 194 89 15 chr6 107522039 107522144 -74893098 + MLT1A1 LTR MaLR 1 97 -268 1811 171 57 38 chr6 107522144 107522512 -74892730 + THE1C LTR MaLR 1 375 0 1562 194 89 15 chr6 107522512 107522742 -74892500 + MLT1A1 LTR MaLR 97 361 -4 12144 31 1 1 chr6 107573538 107575168 -74840074 + L1P1 LINE L1 3863 5492 -663 16871 33 1 0 chr6 107575268 107577401 -74837841 + L1P LINE L1 2728 4862 -1284 6179 164 70 29 chr6 107577503 107579276 -74835966 - L1M1 LINE L1 -4065 1263 4 1596 212 8 30 chr6 107579297 107579670 -74835572 + MLT1A1 LTR MaLR 1 365 0 1467 202 39 36 chr6 107579986 107580397 -74834845 - MLT1C LTR MaLR -46 421 10 21 0 0 0 chr6 107581113 107581134 -74834108 + AT_rich Low_complexity Low_complexity 1 21 0 2573 73 3 6 chr6 107581156 107581498 -74833744 - L1PA3 LINE L1 -16 6139 5799 456 240 67 7 chr6 107582972 107583122 -74832120 + L1MD3 LINE L1 5678 5836 -1972 206 288 0 0 chr6 107583539 107583598 -74831644 + CT-rich Low_complexity Low_complexity 1 59 0 553 276 47 81 chr6 107583619 107583978 -74831264 - L2 LINE L2 -56 3257 2911 2611 147 33 27 chr6 107584222 107584704 -74830538 + MER31A LTR ERV1 1 485 0 13669 59 5 5 chr6 107587382 107589228 -74826014 - L1P LINE L1 -4300 1846 1 1398 97 5 0 chr6 107589229 107589445 -74825797 - L1M1 LINE L1 -4545 3020 2804 526 200 62 6 chr6 107589445 107589605 -74825637 + L1MD3 LINE L1 6944 7112 -883 307 204 37 102 chr6 107589619 107589727 -74825515 + MLT1F1 LTR MaLR 35 135 -432 2145 197 55 4 chr6 107589727 107590235 -74825007 + L1MD3 LINE L1 7412 7945 -50 26 30 0 0 chr6 107590277 107590310 -74824932 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr6 107590956 107590989 -74824253 + AT_rich Low_complexity Low_complexity 1 33 0 14761 183 21 11 chr6 107592059 107595802 -74819440 + L1M1 LINE L1 3147 6938 -743 2122 115 3 3 chr6 107595904 107596192 -74819050 - AluSp SINE Alu -25 288 1 866 252 40 20 chr6 107596250 107596552 -74818690 - L1ME1 LINE L1 -5 6161 5854 247 384 122 14 chr6 107597003 107597420 -74817822 - L2 LINE L2 -746 2568 2107 677 269 58 2 chr6 107597494 107597878 -74817364 + MLT1L LTR MaLR 126 589 -26 1585 179 38 82 chr6 107599158 107599610 -74815632 + MSTB1 LTR MaLR 1 432 0 436 177 24 205 chr6 107600014 107600146 -74815096 + L2 LINE L2 838 892 -2422 772 258 45 0 chr6 107600146 107600344 -74814898 + MER63A DNA MER1_type 4 210 0 436 177 24 205 chr6 107600344 107600499 -74814743 + L2 LINE L2 892 1073 -2241 193 333 0 0 chr6 107600622 107600682 -74814560 + L2 LINE L2 3254 3313 0 988 96 0 37 chr6 107600864 107601051 -74814191 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 725 202 8 0 chr6 107601053 107601182 -74814060 - FLAM_C SINE Alu -3 130 1 1501 176 32 25 chr6 107601353 107601637 -74813605 - AluJo SINE Alu -22 290 5 850 302 204 28 chr6 107601639 107602413 -74812829 + L3 LINE CR1 633 1542 -35 237 157 0 0 chr6 107602418 107602469 -74812773 - L1MA2 LINE L1 -291 6013 5963 428 209 11 0 chr6 107602506 107602597 -74812645 - MER54A LTR ERVL -444 457 366 25551 114 11 25 chr6 107602638 107606997 -74808245 + L1P LINE L1 773 5070 -1076 2817 122 13 0 chr6 107606996 107607471 -74807771 - L1P LINE L1 -2905 3241 2761 * 267 335 69 0 chr6 107607479 107607712 -74807530 - L1M4 LINE L1 -1870 4276 4028 280 341 71 6 chr6 107607734 107607916 -74807326 - L1ME1 LINE L1 -2038 5770 5577 289 244 33 22 chr6 107608003 107608093 -74807149 - MLT1H LTR MaLR -4 545 455 317 258 45 52 chr6 107608817 107608972 -74806270 - L2 LINE L2 -2 3311 3158 380 289 44 15 chr6 107609343 107609478 -74805764 + L2 LINE L2 3175 3313 0 456 192 29 0 chr6 107611527 107611631 -74803611 + MER53 DNA DNA 2 108 -81 282 297 21 28 chr6 107612082 107612227 -74803015 + L1MC5 LINE L1 7783 7926 -35 291 295 125 23 chr6 107613151 107613456 -74801786 + HAL1b LINE L1 72 407 -941 350 305 134 42 chr6 107613467 107613706 -74801536 + HAL1b LINE L1 647 907 -441 350 294 26 36 chr6 107614095 107614289 -74800953 - L1MC5 LINE L1 -770 7191 7000 348 271 71 30 chr6 107614464 107614800 -74800442 + L1MC5 LINE L1 7552 7901 -60 448 129 12 24 chr6 107615205 107615290 -74799952 - MER51D LTR ERV1 -74 583 500 380 260 188 7 chr6 107615393 107615547 -74799695 + MIR3 SINE MIR 20 201 -7 2167 138 69 23 chr6 107615639 107616031 -74799211 - MSTC LTR MaLR 0 428 19 2512 156 26 2 chr6 107616187 107616603 -74798639 + MSTB LTR MaLR 1 426 0 225 268 0 0 chr6 107618934 107618990 -74796252 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 278 209 35 12 chr6 107619031 107619117 -74796125 + MER112 DNA MER1_type 156 243 -17 630 319 99 53 chr6 107619275 107619749 -74795493 + L2 LINE L2 2818 3313 0 207 0 0 0 chr6 107621003 107621026 -74794216 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 333 282 97 79 chr6 107621026 107621234 -74794008 - L2 LINE L2 -14 3299 3085 226 294 20 0 chr6 107621462 107621513 -74793729 + MIR SINE MIR 31 82 -180 491 259 23 15 chr6 107621785 107621916 -74793326 + MIR SINE MIR 18 149 -59 2314 191 69 6 chr6 107622622 107623141 -74792101 + MLT1F1 LTR MaLR 1 552 -15 417 318 36 68 chr6 107623599 107623851 -74791391 - L2 LINE L2 -1 3271 3028 293 254 130 42 chr6 107624963 107625293 -74789949 + L1ME4a LINE L1 5758 6116 -5 372 182 267 145 chr6 107625379 107625675 -74789567 + LTR33A LTR ERVL 69 400 -123 269 261 0 0 chr6 107625713 107625778 -74789464 + MER117 DNA MER1_type 25 89 -108 185 316 174 31 chr6 107625907 107626005 -74789237 + MIR3 SINE MIR 6 117 -91 228 350 90 15 chr6 107628027 107628227 -74787015 + L2 LINE L2 3095 3309 -4 338 272 103 22 chr6 107628604 107628740 -74786502 + MIR SINE MIR 12 158 -104 1198 134 46 0 chr6 107628827 107629021 -74786221 + Tigger4(Zombi) DNA MER2_type 1 203 -2528 * 2847 134 8 10 chr6 107629016 107629509 -74785733 + Tigger4(Zombi) DNA MER2_type 2240 2731 0 643 200 9 0 chr6 107630053 107630163 -74785079 - MER5B DNA MER1_type -60 118 8 225 295 40 101 chr6 107631059 107631208 -74784034 - L2 LINE L2 -199 3073 2934 255 157 0 0 chr6 107631404 107631455 -74783787 + (TG)n Simple_repeat Simple_repeat 2 52 0 279 207 27 45 chr6 107631744 107631855 -74783387 - L1M4 LINE L1 -2154 3992 3884 298 226 139 7 chr6 107631938 107632075 -74783167 + L1M4 LINE L1 4037 4191 -1955 1172 264 51 24 chr6 107632108 107632751 -74782491 + L1M4 LINE L1 4280 4946 -1200 289 247 0 41 chr6 107632759 107632856 -74782386 + (CATA)n Simple_repeat Simple_repeat 4 96 0 1116 290 42 13 chr6 107633021 107633400 -74781842 + L1MB1 LINE L1 417 806 -5497 2253 245 82 8 chr6 107633792 107634277 -74780965 + L1MB1 LINE L1 806 1253 -5050 291 54 0 0 chr6 107634277 107634314 -74780928 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2253 245 82 8 chr6 107634314 107634748 -74780494 + L1MB1 LINE L1 1253 1787 -4516 * 6082 74 16 0 chr6 107634746 107635646 -74779596 + L1PA6 LINE L1 4447 5360 -786 4952 73 2 0 chr6 107635688 107636322 -74778920 + L1PA6 LINE L1 5519 6153 -1 229 171 0 0 chr6 107636330 107636371 -74778871 + L1MB1 LINE L1 3007 3047 -3335 2634 194 19 6 chr6 107636376 107636901 -74778341 - Tigger7 DNA MER2_type -1952 535 4 1886 165 20 54 chr6 107636909 107638138 -74777104 + L1MB1 LINE L1 5084 6404 0 424 310 68 3 chr6 107638285 107638651 -74776591 + L1ME3A LINE L1 5187 5575 -595 18071 54 4 8 chr6 107638764 107641161 -74774081 - L1P LINE L1 -3753 2393 6 823 211 154 7 chr6 107641444 107641724 -74773518 - MER69 DNA AcHobo 0 2526 2206 842 214 132 12 chr6 107642923 107643166 -74772076 + ORSL DNA AcHobo 2 273 -2 1574 148 39 42 chr6 107643338 107643697 -74771545 - THE1C LTR MaLR -15 360 3 787 210 62 5 chr6 107643697 107643921 -74771321 + L1ME3A LINE L1 5728 5964 -206 23 68 0 0 chr6 107645699 107645743 -74769499 + AT_rich Low_complexity Low_complexity 1 44 0 530 271 33 0 chr6 107646922 107647073 -74768169 + MIR SINE MIR 105 260 -2 1050 230 44 0 chr6 107647583 107647879 -74767363 + L1M4 LINE L1 2620 2928 -3218 2098 129 3 7 chr6 107648027 107648336 -74766906 - AluSx SINE Alu -4 308 1 234 91 0 0 chr6 107648626 107648659 -74766583 + (CA)n Simple_repeat Simple_repeat 1 33 0 249 83 0 0 chr6 107648659 107648695 -74766547 + (TC)n Simple_repeat Simple_repeat 1 36 0 297 109 0 0 chr6 107649555 107649601 -74765641 + (GA)n Simple_repeat Simple_repeat 2 47 0 1608 201 52 15 chr6 107650165 107650573 -74764669 - MER74A LTR ERVL 0 558 136 1951 117 40 85 chr6 107651163 107651515 -74763727 - MER1B DNA MER1_type -1 336 1 603 305 199 16 chr6 107652096 107652417 -74762825 - L2 LINE L2 -9 3263 2884 408 252 54 9 chr6 107652561 107652672 -74762570 + MIR SINE MIR 78 193 -69 359 231 33 0 chr6 107653044 107653135 -74762107 - MER117 DNA MER1_type -66 131 38 21 0 0 0 chr6 107653405 107653426 -74761816 + AT_rich Low_complexity Low_complexity 1 21 0 225 208 38 0 chr6 107654798 107654851 -74760391 + CT-rich Low_complexity Low_complexity 2 56 0 281 323 10 10 chr6 107655389 107655485 -74759757 + L2 LINE L2 3177 3272 0 218 255 0 159 chr6 107655482 107655627 -74759615 + MIR SINE MIR 137 258 -4 * 23 33 0 0 chr6 107655651 107655681 -74759561 + AT_rich Low_complexity Low_complexity 1 30 0 553 272 163 7 chr6 107656664 107656965 -74758277 - LTR33 LTR ERVL -171 350 3 2842 119 16 32 chr6 107657645 107657760 -74757482 - L1MA8 LINE L1 -3 6288 6173 2415 158 36 5 chr6 107657760 107658178 -74757064 + MSTB1 LTR MaLR 1 431 -1 2842 119 16 32 chr6 107658178 107658565 -74756677 - L1MA8 LINE L1 -118 6173 5794 386 43 58 0 chr6 107658565 107658634 -74756608 + (TA)n Simple_repeat Simple_repeat 2 74 0 1872 146 25 0 chr6 107658639 107658938 -74756304 - AluSx SINE Alu 0 306 1 588 225 9 9 chr6 107659098 107659209 -74756033 - MER5B DNA MER1_type -3 175 65 1793 143 7 11 chr6 107659979 107660317 -74754925 - AluJb SINE Alu 0 348 12 184 246 72 43 chr6 107660453 107660522 -74754720 + L2 LINE L2 3147 3217 -55 1349 206 25 38 chr6 107661482 107661798 -74753444 - AluJo SINE Alu 0 312 1 499 40 53 0 chr6 107662891 107662967 -74752275 + (TTATA)n Simple_repeat Simple_repeat 1 80 0 979 264 29 98 chr6 107664526 107665048 -74750194 + LTR33 LTR ERVL 34 519 -2 272 288 0 5 chr6 107665310 107665459 -74749783 - MIR SINE MIR -6 256 52 596 222 98 41 chr6 107665825 107666037 -74749205 - HAL1 LINE L1 -1 2506 2275 2134 110 0 23 chr6 107666037 107666336 -74748906 - AluSc SINE Alu -17 292 1 596 222 98 41 chr6 107666336 107666389 -74748853 - HAL1 LINE L1 -232 2275 2226 305 323 38 30 chr6 107666455 107666588 -74748654 - HAL1 LINE L1 -396 2111 1978 4679 187 135 16 chr6 107666592 107668376 -74746866 - L1MCb LINE L1 -4036 2528 533 670 283 61 33 chr6 107668386 107668746 -74746496 - L1MCb LINE L1 -5673 372 3 1764 271 102 47 chr6 107668812 107669957 -74745285 - HAL1 LINE L1 -557 1950 743 309 188 14 14 chr6 107670068 107670137 -74745105 + MLT1J2 LTR MaLR 67 135 -315 261 294 12 12 chr6 107670337 107670422 -74744820 - HAL1 LINE L1 -1830 677 593 399 277 131 73 chr6 107670440 107670714 -74744528 - HAL1 LINE L1 -2093 414 125 1149 35 0 0 chr6 107670715 107670860 -74744382 - L1HS LINE L1 0 6155 6011 347 282 30 15 chr6 107670852 107670983 -74744259 - HAL1 LINE L1 -2374 133 1 * 299 333 89 69 chr6 107671265 107671670 -74743572 + L2 LINE L2 2851 3263 -9 980 138 7 0 chr6 107671926 107672071 -74743171 + AluSg/x SINE Alu 144 289 -23 210 143 0 0 chr6 107672612 107672647 -74742595 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1031 217 133 6 chr6 107674032 107674351 -74740891 - MLT1E1 LTR MaLR -41 559 254 3067 35 3 0 chr6 107674835 107675285 -74739957 + L1PA4 LINE L1 5782 6232 0 307 293 172 9 chr6 107675335 107675550 -74739692 + L1ME LINE L1 5469 5718 -403 21 0 0 0 chr6 107675604 107675625 -74739617 + AT_rich Low_complexity Low_complexity 1 21 0 468 252 42 7 chr6 107677380 107677523 -74737719 - LTR33A LTR ERVL 0 523 376 207 200 0 62 chr6 107677531 107677596 -74737646 + (CTG)n Simple_repeat Simple_repeat 3 63 0 286 239 84 0 chr6 107680180 107680251 -74734991 + MER112 DNA MER1_type 177 253 -7 1916 155 0 0 chr6 107680952 107681256 -74733986 + AluSx SINE Alu 1 304 0 363 376 76 0 chr6 107681547 107681704 -74733538 + L3 LINE CR1 1407 1575 -2 5399 177 31 14 chr6 107682150 107682345 -74732897 + L1MA4 LINE L1 5016 5206 -1094 804 76 8 25 chr6 107682345 107682464 -74732778 + L1MA1 LINE L1 6181 6297 -5 5399 177 31 14 chr6 107682464 107683523 -74731719 + L1MA4 LINE L1 5206 6280 -20 2127 118 0 29 chr6 107683827 107684133 -74731109 + AluSx SINE Alu 1 297 -15 226 230 214 48 chr6 107684299 107684425 -74730817 - L2 LINE L2 -5 3308 3162 420 315 18 6 chr6 107684584 107684749 -74730493 + L1ME LINE L1 5578 5744 -377 377 171 14 79 chr6 107684910 107684989 -74730253 + L1ME4a LINE L1 5991 6059 -62 4506 121 21 8 chr6 107684989 107685716 -74729526 - L1MA5A LINE L1 -10 6287 5552 377 171 14 79 chr6 107685716 107685776 -74729466 + L1ME4a LINE L1 6059 6121 0 251 391 93 53 chr6 107686611 107686913 -74728329 - L2 LINE L2 -1 3271 2958 229 279 101 25 chr6 107687845 107687924 -74727318 + L2 LINE L2 3122 3206 -66 195 42 0 0 chr6 107687983 107688007 -74727235 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 851 254 119 59 chr6 107688118 107688566 -74726676 - MLT1H LTR MaLR -25 524 11 232 231 0 0 chr6 107688580 107688632 -74726610 + (ATG)n Simple_repeat Simple_repeat 3 54 0 602 276 78 26 chr6 107688641 107688869 -74726373 - MIR SINE MIR -16 246 6 573 196 20 0 chr6 107689339 107689441 -74725801 + MER5A DNA MER1_type 9 112 -77 612 246 102 0 chr6 107689505 107689672 -74725570 + MIR SINE MIR 74 257 -5 392 328 46 8 chr6 107689947 107690078 -74725164 + MIR SINE MIR 18 153 -55 5824 82 20 1 chr6 107690107 107690901 -74724341 - L1PA11 LINE L1 -40 6134 5326 184 298 18 0 chr6 107690902 107690959 -74724283 - MIR SINE MIR -115 93 36 2523 60 3 13 chr6 107691005 107691319 -74723923 + AluY SINE Alu 1 311 0 263 214 43 43 chr6 107692284 107692354 -74722888 + L2 LINE L2 3203 3272 0 189 358 137 0 chr6 107692925 107693020 -74722222 + MIR3 SINE MIR 98 205 -3 21 0 0 0 chr6 107693593 107693614 -74721628 + AT_rich Low_complexity Low_complexity 1 21 0 2179 123 7 7 chr6 107694458 107694768 -74720474 - AluSg SINE Alu 0 310 1 236 294 99 22 chr6 107695014 107695135 -74720107 + MIR SINE MIR 37 176 -84 4099 87 9 3 chr6 107696409 107696993 -74718249 - L1MA2 LINE L1 0 6304 5718 14967 166 15 16 chr6 107697002 107697036 -74718206 - L1 LINE L1 -981 6584 6551 2451 64 0 3 chr6 107697036 107697334 -74717908 - AluY SINE Alu -12 299 3 14967 166 15 16 chr6 107697334 107700724 -74714518 - L1 LINE L1 -1014 6551 3164 188 100 25 0 chr6 107700724 107700764 -74714478 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 5008 27 3 0 chr6 107700766 107701352 -74713890 - L1PA3 LINE L1 -3 6152 5565 2383 74 14 0 chr6 107701912 107702209 -74713033 - AluY SINE Alu -10 301 1 370 282 0 0 chr6 107702552 107702637 -74712605 + MER91B DNA MER1_type 46 130 -60 1613 129 32 32 chr6 107702898 107703207 -74712035 + MER33 DNA MER1_type 16 324 0 214 178 22 0 chr6 107704084 107704129 -74711113 + GA-rich Low_complexity Low_complexity 1 46 0 484 255 149 11 chr6 107704995 107705183 -74710059 + MIR SINE MIR 49 262 0 1778 159 0 33 chr6 107705838 107706140 -74709102 + AluJb SINE Alu 1 292 -20 1907 147 3 34 chr6 107706442 107706762 -74708480 - AluJb SINE Alu -2 310 1 479 323 36 10 chr6 107707026 107707218 -74708024 + L2 LINE L2 1845 2041 -1273 311 309 25 55 chr6 107707238 107707439 -74707803 - L1M4 LINE L1 -3838 2308 2114 308 245 61 10 chr6 107707502 107707600 -74707642 - MLT1L LTR MaLR -4 611 509 282 179 0 0 chr6 107707621 107707677 -74707565 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 217 241 0 38 chr6 107707689 107707752 -74707490 + T-rich Low_complexity Low_complexity 1 62 -14 1196 70 0 0 chr6 107707752 107707909 -74707333 - L1PA4 LINE L1 -1 6154 5998 217 241 0 38 chr6 107707909 107707924 -74707318 + T-rich Low_complexity Low_complexity 62 76 0 7183 174 12 6 chr6 107708033 107710283 -74704959 + L1PB4 LINE L1 3851 6115 -41 243 141 47 0 chr6 107710334 107710398 -74704844 + (TA)n Simple_repeat Simple_repeat 1 67 0 191 36 36 0 chr6 107710554 107710582 -74704660 + (TTGTG)n Simple_repeat Simple_repeat 2 30 0 1187 134 0 0 chr6 107710581 107710770 -74704472 - AluSg/x SINE Alu 0 310 122 251 229 108 38 chr6 107710846 107711003 -74704239 - HAL1b LINE L1 -500 848 681 313 340 39 0 chr6 107711007 107711110 -74704132 - MIR SINE MIR -153 109 3 894 308 45 29 chr6 107711695 107712075 -74703167 - MLT1L LTR MaLR -100 515 130 599 174 0 28 chr6 107712647 107712756 -74702486 + FRAM SINE Alu 52 157 -19 676 300 24 28 chr6 107712820 107713067 -74702175 - MIR SINE MIR -5 257 12 200 188 0 62 chr6 107713876 107713924 -74701318 + (TG)n Simple_repeat Simple_repeat 2 46 0 542 254 57 34 chr6 107714864 107715014 -74700228 + MIR SINE MIR 45 202 -60 2386 67 0 13 chr6 107715014 107715329 -74699913 + AluY SINE Alu 1 311 0 542 254 57 34 chr6 107715329 107715381 -74699861 + MIR SINE MIR 202 251 -11 474 297 27 45 chr6 107718141 107718363 -74696879 + MIR SINE MIR 29 246 -16 214 299 108 40 chr6 107719360 107719535 -74695707 - MIR SINE MIR -41 221 34 688 239 81 57 chr6 107720611 107720858 -74694384 + MLT1H LTR MaLR 38 290 -259 331 196 109 22 chr6 107721013 107721105 -74694137 - MER103 DNA DNA -6 160 61 34 55 0 0 chr6 107721140 107721195 -74694047 + AT_rich Low_complexity Low_complexity 1 55 0 241 390 42 0 chr6 107722205 107722300 -74692942 - L2 LINE L2 -48 3224 3126 349 264 0 0 chr6 107722908 107722980 -74692262 - MER94 DNA DNA -1 133 62 32 75 0 0 chr6 107723275 107723342 -74691900 + AT_rich Low_complexity Low_complexity 1 67 0 305 260 33 88 chr6 107723609 107723790 -74691452 + MIR SINE MIR 1 171 -91 298 273 109 9 chr6 107724116 107724226 -74691016 - L2 LINE L2 -23 3249 3129 244 267 40 27 chr6 107724664 107724739 -74690503 + MIR SINE MIR 91 166 -96 415 218 0 13 chr6 107724740 107724818 -74690424 + L2 LINE L2 3187 3263 -50 208 182 0 0 chr6 107724857 107724890 -74690352 + L2 LINE L2 3265 3297 -16 210 278 80 66 chr6 107725894 107726045 -74689197 + L2 LINE L2 739 891 -2423 804 154 179 136 chr6 107726154 107726434 -74688808 - MLT2B2 LTR ERVL -7 513 222 242 303 76 30 chr6 107726739 107726871 -74688371 + L2 LINE L2 3158 3295 -18 220 350 40 20 chr6 107727469 107727569 -74687673 + L2 LINE L2 3159 3260 -12 438 121 81 40 chr6 107727947 107728005 -74687237 - L1MDa LINE L1 -4358 2182 2117 2288 110 3 3 chr6 107728005 107728314 -74686928 + AluSg SINE Alu 1 309 -1 438 121 81 40 chr6 107728314 107728354 -74686888 - L1MDa LINE L1 -4423 2117 2080 7450 24 0 2 chr6 107728388 107729687 -74685555 - L1PA4 LINE L1 -9 6146 4840 15294 61 2 1 chr6 107729787 107731908 -74683334 + L1P LINE L1 2071 4192 -1954 495 305 104 12 chr6 107782458 107782717 -74632525 + L1MC/D LINE L1 5525 5807 -2001 188 296 56 0 chr6 107784026 107784097 -74631145 + L3 LINE CR1 656 730 -847 690 279 17 0 chr6 107785018 107785197 -74630045 - MIR SINE MIR -2 260 79 2679 39 0 0 chr6 107785527 107785835 -74629407 + AluY SINE Alu 1 308 -3 277 280 51 51 chr6 107786035 107786153 -74629089 + MER117 DNA MER1_type 1 118 -79 25 31 0 0 chr6 107786890 107786922 -74628320 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 107787557 107787579 -74627663 + AT_rich Low_complexity Low_complexity 1 22 0 417 117 0 0 chr6 107787586 107787646 -74627596 - AluS SINE Alu -257 61 2 1360 120 0 0 chr6 107787647 107787839 -74627403 + AluSg/x SINE Alu 103 294 -16 5984 88 5 11 chr6 107788175 107788834 -74626408 - L1PA13 LINE L1 -19 6144 5482 228 35 0 0 chr6 107788834 107788863 -74626379 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5984 88 5 11 chr6 107788863 107789495 -74625747 - L1PA13 LINE L1 -681 5482 4848 4789 206 18 12 chr6 107789497 107790569 -74624673 - L1 LINE L1 -975 5171 4094 396 280 59 0 chr6 107790611 107790729 -74624513 + L2 LINE L2 3177 3301 -12 2395 68 0 3 chr6 107790754 107791048 -74624194 + AluY SINE Alu 4 296 -15 21 36 0 0 chr6 107791067 107791095 -74624147 + AT_rich Low_complexity Low_complexity 1 28 0 247 270 135 16 chr6 107791294 107791420 -74623822 + L3 LINE CR1 1297 1437 -140 712 257 59 36 chr6 107791437 107791690 -74623552 - MIR SINE MIR 0 262 4 446 236 154 36 chr6 107791710 107791905 -74623337 - MIR SINE MIR -21 241 24 210 288 30 0 chr6 107791908 107791974 -74623268 + L3 LINE CR1 1456 1523 -54 1726 163 14 0 chr6 107792004 107792280 -74622962 + AluJo SINE Alu 1 280 -32 370 256 144 30 chr6 107793106 107793307 -74621935 + MIR SINE MIR 5 220 -42 254 257 48 4 chr6 107793365 107793470 -74621772 + MIR SINE MIR 105 258 -4 22 0 0 0 chr6 107793470 107793492 -74621750 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr6 107793534 107793574 -74621668 + (CA)n Simple_repeat Simple_repeat 1 40 0 23 54 0 0 chr6 107794083 107794120 -74621122 + AT_rich Low_complexity Low_complexity 1 37 0 392 303 135 50 chr6 107794194 107794464 -74620778 - L1M4 LINE L1 -2008 4138 3818 2060 126 64 14 chr6 107794464 107794821 -74620421 - THE1C LTR MaLR 0 375 1 392 303 135 50 chr6 107794821 107794972 -74620270 - L1M4 LINE L1 -2328 3818 3681 23 54 0 0 chr6 107795260 107795297 -74619945 + AT_rich Low_complexity Low_complexity 1 37 0 1608 213 147 5 chr6 107795714 107796123 -74619119 - MLT1E3 LTR MaLR -3 621 155 967 192 0 6 chr6 107796124 107796291 -74618951 - FRAM SINE Alu -17 159 1 712 219 8 0 chr6 107796323 107796451 -74618791 - MLT1E3 LTR MaLR -522 132 4 266 246 61 61 chr6 107796584 107796698 -74618544 + MLT1J1 LTR MaLR 224 337 -109 235 294 18 55 chr6 107796785 107796894 -74618348 + MLT1J LTR MaLR 301 405 -106 22 0 0 0 chr6 107797753 107797775 -74617467 + AT_rich Low_complexity Low_complexity 1 22 0 2111 106 3 0 chr6 107799153 107799481 -74615761 + AluSp SINE Alu 1 329 0 228 274 158 90 chr6 107799803 107800037 -74615205 - MLT1K LTR MaLR -159 429 180 201 306 59 35 chr6 107800216 107800301 -74614941 + L2 LINE L2 3186 3272 0 22 0 0 0 chr6 107801882 107801904 -74613338 + AT_rich Low_complexity Low_complexity 1 22 0 1801 202 11 6 chr6 107802401 107802748 -74612494 - MLT1A1 LTR MaLR -12 353 5 253 279 42 55 chr6 107802755 107802920 -74612322 + MER5C DNA MER1_type 60 222 -102 213 318 152 0 chr6 107803231 107803363 -74611879 + MIR SINE MIR 79 230 -32 1517 184 36 21 chr6 107803541 107803872 -74611370 - MER44D DNA MER2_type 0 609 4 205 280 80 0 chr6 107803875 107803950 -74611292 + MIR SINE MIR 175 255 -7 203 312 0 13 chr6 107803953 107804030 -74611212 + (CATA)n Simple_repeat Simple_repeat 3 78 0 2001 207 12 66 chr6 107804973 107805563 -74609679 - MER74A LTR ERVL 0 558 1 498 46 0 0 chr6 107806614 107806679 -74608563 + (TG)n Simple_repeat Simple_repeat 2 66 0 242 336 67 25 chr6 107808425 107808544 -74606698 + MIR SINE MIR 19 142 -66 794 252 96 0 chr6 107808942 107809160 -74606082 + MIR SINE MIR 13 251 -11 337 247 5 24 chr6 107810373 107810479 -74604763 - MIR SINE MIR -32 176 70 23 0 0 0 chr6 107811935 107811958 -74603284 + AT_rich Low_complexity Low_complexity 1 23 0 2043 116 0 11 chr6 107812420 107812732 -74602510 - AluSq SINE Alu 0 309 1 269 67 0 22 chr6 107812921 107812966 -74602276 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 332 315 127 6 chr6 107813159 107813340 -74601902 + MIR SINE MIR 32 234 -28 23 0 0 0 chr6 107813522 107813545 -74601697 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr6 107817389 107817414 -74597828 + (T)n Simple_repeat Simple_repeat 1 25 0 2156 126 11 53 chr6 107817451 107817809 -74597433 - MER61A LTR ERV1 0 343 1 1731 286 95 21 chr6 107820670 107821283 -74593959 + L1M2a LINE L1 1451 2108 -5060 261 344 61 46 chr6 107821462 107821593 -74593649 - L2 LINE L2 -15 3257 3125 837 225 81 10 chr6 107821949 107822158 -74593084 + MIR SINE MIR 10 233 -29 204 243 157 0 chr6 107822704 107822774 -74592468 + MIR SINE MIR 60 140 -122 192 77 0 0 chr6 107823166 107823192 -74592050 + (T)n Simple_repeat Simple_repeat 1 26 0 2002 141 7 3 chr6 107823406 107823711 -74591531 + AluSx SINE Alu 1 306 -6 27 29 0 0 chr6 107823929 107823963 -74591279 + AT_rich Low_complexity Low_complexity 1 34 0 226 118 59 0 chr6 107824241 107824292 -74590950 + CT-rich Low_complexity Low_complexity 3 56 0 22 35 0 0 chr6 107824634 107824663 -74590579 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr6 107824741 107824781 -74590461 + AT_rich Low_complexity Low_complexity 1 40 0 22 88 0 0 chr6 107824843 107824900 -74590342 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr6 107827513 107827535 -74587707 + AT_rich Low_complexity Low_complexity 1 22 0 204 97 0 0 chr6 107827563 107827594 -74587648 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 201 244 0 0 chr6 107827640 107827685 -74587557 + MIR3 SINE MIR 150 194 -14 1474 203 55 21 chr6 107828124 107828450 -74586792 + MER2 DNA MER2_type 9 345 0 3029 251 65 48 chr6 107828643 107829027 -74586215 - L1M4 LINE L1 -3776 2194 1818 1660 171 3 27 chr6 107829027 107829326 -74585916 - AluJo SINE Alu -20 292 1 3029 251 65 48 chr6 107829326 107831424 -74583818 - L1M4 LINE L1 -4152 1818 1 371 290 58 7 chr6 107831609 107831764 -74583478 + MER103 DNA DNA 3 165 -1 2345 95 0 10 chr6 107833987 107834292 -74580950 - AluSg1 SINE Alu -7 302 1 2114 189 22 88 chr6 107834316 107834531 -74580711 + L1MA9 LINE L1 5565 5793 -519 198 0 0 0 chr6 107834531 107834553 -74580689 + (TG)n Simple_repeat Simple_repeat 1 22 0 2114 189 22 88 chr6 107834553 107834936 -74580306 + L1MA9 LINE L1 5793 6123 -189 2530 68 3 0 chr6 107836034 107836344 -74578898 - AluY SINE Alu 0 311 1 264 385 83 56 chr6 107836407 107836817 -74578425 - L2 LINE L2 -7 3265 2845 431 321 68 21 chr6 107837102 107837292 -74577950 + MIR3 SINE MIR 5 203 -5 2133 108 0 23 chr6 107838354 107838661 -74576581 - AluSx SINE Alu -12 300 1 310 311 104 19 chr6 107838749 107838855 -74576387 + L2 LINE L2 3198 3312 -1 23 33 0 0 chr6 107839209 107839239 -74576003 + AT_rich Low_complexity Low_complexity 1 30 0 201 259 0 0 chr6 107840509 107840567 -74574675 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 1858 180 41 36 chr6 107840646 107841058 -74574184 + MLT1C LTR MaLR 54 467 0 245 283 92 14 chr6 107841162 107841413 -74573829 + L1ME4a LINE L1 5191 5468 -745 398 234 16 102 chr6 107841426 107841554 -74573688 - MIR SINE MIR -28 234 118 236 266 21 43 chr6 107841669 107841763 -74573479 + L1ME4a LINE L1 5567 5658 -2150 * 249 231 148 37 chr6 107841754 107841862 -74573380 + L1ME4a LINE L1 5962 6081 -40 258 150 0 0 chr6 107841904 107841944 -74573298 - MER91B DNA MER1_type -127 63 24 186 333 40 20 chr6 107843135 107843285 -74571957 + L3b LINE CR1 1123 1275 -308 2140 89 3 3 chr6 107843324 107843638 -74571604 + AluSc SINE Alu 1 314 0 858 207 78 12 chr6 107843656 107843898 -74571344 - ORSL DNA AcHobo -16 259 2 431 282 44 53 chr6 107844086 107844292 -74570950 - MIR SINE MIR -39 223 20 27 0 0 0 chr6 107845275 107845302 -74569940 + AT_rich Low_complexity Low_complexity 1 27 0 355 380 35 0 chr6 107848684 107848797 -74566445 - L3 LINE CR1 -418 1159 1043 1133 322 95 49 chr6 107848855 107850112 -74565130 - L2 LINE L2 0 3272 1950 733 289 109 12 chr6 107850186 107850508 -74564734 - MLT1J2 LTR MaLR -30 420 68 184 354 0 15 chr6 107851187 107851252 -74563990 - L3 LINE CR1 -1114 463 400 359 299 26 12 chr6 107851356 107851500 -74563742 + MLT1I LTR MaLR 68 212 -197 777 273 102 9 chr6 107851725 107851941 -74563301 + MIR SINE MIR 27 262 0 323 344 73 0 chr6 107853589 107853740 -74561502 - MIR SINE MIR -11 251 90 226 352 31 39 chr6 107854005 107854133 -74561109 + MIR SINE MIR 26 152 -110 1269 129 0 0 chr6 107855019 107855197 -74560045 + AluSg/x SINE Alu 134 311 -1 2580 169 67 18 chr6 107855198 107855237 -74560005 - MLT2B2 LTR ERVL 0 515 479 777 11 0 0 chr6 107855237 107855327 -74559915 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 2580 169 67 18 chr6 107855327 107855778 -74559464 - MLT2B2 LTR ERVL -36 479 1 2401 170 40 2 chr6 107855908 107856355 -74558887 + L1PB4 LINE L1 5693 6156 0 1104 269 161 35 chr6 107856500 107857121 -74558121 + HAL1 LINE L1 10 708 -1799 987 280 147 33 chr6 107857121 107857578 -74557664 + MLT1J LTR MaLR 3 511 0 507 325 5 16 chr6 107857586 107857777 -74557465 + HAL1 LINE L1 712 900 -1607 337 238 71 8 chr6 107857827 107857953 -74557289 + HAL1 LINE L1 908 1041 -1466 2098 114 7 0 chr6 107858065 107858345 -74556897 + AluSq SINE Alu 3 284 -29 207 0 0 0 chr6 107858345 107858368 -74556874 + (TA)n Simple_repeat Simple_repeat 2 24 0 1723 289 51 10 chr6 107858377 107859101 -74556141 + HAL1 LINE L1 1060 1813 -694 1476 236 45 32 chr6 107859101 107859541 -74555701 - LTR16A1 LTR ERVL 0 457 12 1132 244 36 43 chr6 107859563 107859956 -74555286 + HAL1 LINE L1 1825 2214 -293 366 252 106 24 chr6 107861003 107861126 -74554116 - L2 LINE L2 -2 3311 3179 452 141 0 0 chr6 107863365 107863450 -74551792 + MER53 DNA DNA 93 177 -12 * 527 133 0 0 chr6 107863381 107863471 -74551771 - MER53 DNA DNA -98 91 2 415 323 76 0 chr6 107864517 107864675 -74550567 + MIR3 SINE MIR 1 170 -38 371 270 19 75 chr6 107864763 107864922 -74550320 + MIR SINE MIR 64 213 -49 2666 36 0 0 chr6 107865098 107865402 -74549840 - AluY SINE Alu -7 304 1 213 154 0 0 chr6 107866421 107866460 -74548782 + GA-rich Low_complexity Low_complexity 1 39 0 180 77 0 0 chr6 107867717 107867743 -74547499 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 192 239 30 75 chr6 107867912 107867979 -74547263 - L2 LINE L2 -8 3264 3201 858 226 131 9 chr6 107868046 107868267 -74546975 - MIR SINE MIR -2 260 13 27 0 0 0 chr6 107868330 107868357 -74546885 + AT_rich Low_complexity Low_complexity 1 27 0 1381 184 12 81 chr6 107869625 107869957 -74545285 - AluJo SINE Alu -3 309 1 472 224 84 14 chr6 107870259 107870402 -74544840 + MER103 DNA DNA 14 166 0 202 308 46 0 chr6 107873291 107873356 -74541886 - MIR SINE MIR -107 155 88 1129 60 13 0 chr6 107874182 107874332 -74540910 - L1PA4 LINE L1 -1 6154 6003 342 98 0 0 chr6 107876017 107876068 -74539174 + L1MA8 LINE L1 6078 6128 -163 387 0 0 0 chr6 107877360 107877403 -74537839 + (TA)n Simple_repeat Simple_repeat 1 43 0 934 135 28 11 chr6 107877481 107877659 -74537583 + L1MA8 LINE L1 6107 6287 -4 370 282 143 19 chr6 107878019 107878247 -74536995 + L2 LINE L2 2750 3001 -312 421 187 22 0 chr6 107880026 107880117 -74535125 - L1MD2 LINE L1 -11 6348 6256 1950 185 28 15 chr6 107880155 107880555 -74534687 - L1MC1 LINE L1 0 6333 5929 219 69 0 0 chr6 107881752 107881781 -74533461 + (CA)n Simple_repeat Simple_repeat 1 29 0 513 206 37 0 chr6 107881791 107881927 -74533315 + L1MA9 LINE L1 6151 6291 -21 346 271 107 90 chr6 107882267 107882632 -74532610 - L2 LINE L2 -4 3309 2939 261 119 0 0 chr6 107882708 107882750 -74532492 + (TCTCCC)n Simple_repeat Simple_repeat 5 46 0 357 62 0 0 chr6 107882751 107882799 -74532443 + (TG)n Simple_repeat Simple_repeat 2 49 0 261 326 71 32 chr6 107885173 107885358 -74529884 + MIR SINE MIR 23 206 -56 867 285 98 11 chr6 107885513 107885881 -74529361 + MLT1J LTR MaLR 75 474 -37 230 302 189 19 chr6 107885935 107886094 -74529148 + L2 LINE L2 3127 3312 -1 201 175 0 0 chr6 107886676 107886716 -74528526 + GA-rich Low_complexity Low_complexity 4 43 0 231 361 102 11 chr6 107886786 107887071 -74528171 + L2 LINE L2 1507 1817 -1497 1286 277 223 23 chr6 107887325 107888197 -74527045 + L2 LINE L2 2177 3232 -81 216 67 0 0 chr6 107888747 107888777 -74526465 + (TG)n Simple_repeat Simple_repeat 2 31 0 357 62 0 0 chr6 107890678 107890726 -74524516 + (CA)n Simple_repeat Simple_repeat 2 49 0 21 57 0 0 chr6 107890759 107890794 -74524448 + AT_rich Low_complexity Low_complexity 1 35 0 361 298 124 47 chr6 107891741 107892168 -74523074 - L2 LINE L2 0 3313 2771 2156 124 7 0 chr6 107892843 107893150 -74522092 - AluSc SINE Alu 0 309 1 180 0 0 0 chr6 107893433 107893453 -74521789 + (CAA)n Simple_repeat Simple_repeat 2 21 0 277 254 41 65 chr6 107894327 107894384 -74520858 - L1ME4a LINE L1 -22 6099 6042 2950 49 0 3 chr6 107894384 107894751 -74520491 + L1PA5 LINE L1 5789 6154 0 277 254 41 65 chr6 107894751 107894862 -74520380 - L1ME4a LINE L1 -79 6042 5935 306 308 67 8 chr6 107894887 107895007 -74520235 - L1MC4 LINE L1 -1339 6703 6577 42729 33 22 1 chr6 107895433 107901462 -74513780 + L1PA2 LINE L1 3 6155 0 270 274 55 0 chr6 107902159 107902232 -74513010 - L1ME4a LINE L1 -480 5641 5565 1770 182 0 3 chr6 107902603 107902900 -74512342 + AluJb SINE Alu 3 298 -14 1660 239 138 59 chr6 107902960 107903405 -74511837 + L1MC4 LINE L1 7090 7498 -544 2477 150 36 7 chr6 107903405 107903819 -74511423 - MSTB LTR MaLR 0 426 1 1660 239 138 59 chr6 107903819 107904254 -74510988 + L1MC4 LINE L1 7498 8040 -2 290 315 31 19 chr6 107904347 107904509 -74510733 + L2 LINE L2 2133 2296 -1018 234 143 271 0 chr6 107904476 107904546 -74510696 + L2 LINE L2 3225 3313 0 * 238 351 65 6 chr6 107904727 107904895 -74510347 - Charlie8 DNA MER1_type -2140 277 100 970 57 8 0 chr6 107904896 107905019 -74510223 - L1PA10 LINE L1 0 6168 6045 348 272 12 0 chr6 107905764 107905845 -74509397 - L2 LINE L2 -7 3306 3225 22 0 0 0 chr6 107906133 107906155 -74509087 + AT_rich Low_complexity Low_complexity 1 22 0 1505 268 77 15 chr6 107906702 107907183 -74508059 + MER97a DNA MER1_type? 1 511 -383 398 214 20 0 chr6 107907431 107907529 -74507713 + MER97b DNA MER1_type? 947 1046 -7 334 235 78 48 chr6 107908440 107908606 -74506636 - MER117 DNA MER1_type -26 171 1 379 216 198 36 chr6 107908621 107908732 -74506510 - MIR SINE MIR -64 144 16 217 296 21 92 chr6 107910814 107910956 -74504286 + L2 LINE L2 3141 3272 0 228 121 0 0 chr6 107911717 107911750 -74503492 + MIR SINE MIR 107 139 -69 271 313 0 0 chr6 107912019 107912086 -74503156 - L2 LINE L2 -12 3301 3235 336 315 37 62 chr6 107912130 107912371 -74502871 - L2 LINE L2 -199 3073 2839 225 83 0 0 chr6 107912751 107912787 -74502455 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 429 91 0 0 chr6 107912797 107912852 -74502390 - Alu SINE Alu -20 292 238 4338 135 11 1 chr6 107912852 107913546 -74501696 + L1PA16 LINE L1 5466 6166 0 513 292 54 37 chr6 107913689 107913891 -74501351 + MIR SINE MIR 6 210 -52 2361 108 0 0 chr6 107913969 107914276 -74500966 + AluSx SINE Alu 1 307 -5 29 47 0 0 chr6 107916896 107916939 -74498303 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr6 107917577 107917607 -74497635 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr6 107917871 107917909 -74497333 + AT_rich Low_complexity Low_complexity 1 38 0 279 309 150 37 chr6 107919848 107920249 -74494993 + L2 LINE L2 2435 2880 -434 183 294 0 20 chr6 107920535 107920586 -74494656 + MIR SINE MIR 211 260 -2 6369 63 2 0 chr6 107921123 107921927 -74493315 - L1PA8 LINE L1 -8 6164 5359 377 42 0 0 chr6 107921927 107921975 -74493267 + L1P LINE L1 5307 5354 -800 * 506 266 38 52 chr6 107921964 107922286 -74492956 + L1ME3A LINE L1 5630 5949 -217 288 139 0 0 chr6 107922302 107922345 -74492897 - MLT2B1 LTR ERVL -2 513 471 7538 133 15 11 chr6 107922347 107923060 -74492182 + Tigger3b DNA MER2_type 3 725 -2303 2691 80 3 3 chr6 107923060 107923424 -74491818 + L1PA7 LINE L1 5790 6153 -1 7538 133 15 11 chr6 107923424 107923934 -74491308 + Tigger3b DNA MER2_type 725 1231 0 1656 197 37 42 chr6 107924023 107924429 -74490813 - MLT2B1 LTR ERVL -66 449 3 214 250 58 0 chr6 107925109 107925161 -74490081 + L2 LINE L2 3254 3308 -5 3555 136 88 10 chr6 107925621 107926291 -74488951 - L1MB3 LINE L1 -10 6173 5452 544 37 12 61 chr6 107928521 107928603 -74486639 + MADE1 DNA Mariner 1 78 -2 282 56 0 0 chr6 107928663 107928699 -74486543 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr6 107930671 107930692 -74484550 + AT_rich Low_complexity Low_complexity 1 21 0 868 251 41 29 chr6 107931129 107931378 -74483864 + MIR SINE MIR 14 259 -3 186 279 49 0 chr6 107932094 107932155 -74483087 + L3b LINE CR1 1426 1489 -94 525 300 18 68 chr6 107934387 107934607 -74480635 - MIR SINE MIR 0 262 54 27 49 0 0 chr6 107935370 107935411 -74479831 + AT_rich Low_complexity Low_complexity 1 41 0 593 307 44 40 chr6 107935943 107936171 -74479071 + MIR SINE MIR 34 262 0 201 39 0 0 chr6 107938018 107938044 -74477198 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2355 104 0 0 chr6 107938164 107938471 -74476771 - AluSq SINE Alu -6 307 1 4065 218 77 26 chr6 107938517 107940109 -74475133 + L1MD3 LINE L1 4199 5563 -603 404 297 52 65 chr6 107940197 107940507 -74474735 - MLT1I LTR MaLR -29 380 75 262 309 154 35 chr6 107941228 107941429 -74473813 - MIR SINE MIR -3 259 35 275 327 66 14 chr6 107941630 107941786 -74473456 - MIR SINE MIR -68 140 6 279 0 0 0 chr6 107942612 107942643 -74472599 + (CA)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr6 107942643 107942670 -74472572 + (A)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr6 107942996 107943025 -74472217 + AT_rich Low_complexity Low_complexity 1 29 0 254 349 47 0 chr6 107943206 107943292 -74471950 + MIR SINE MIR 62 151 -111 22 35 0 0 chr6 107945555 107945584 -74469658 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr6 107947136 107947170 -74468072 + AT_rich Low_complexity Low_complexity 1 34 0 483 18 0 0 chr6 107947568 107947624 -74467618 + (TA)n Simple_repeat Simple_repeat 2 57 0 2276 97 0 0 chr6 107947624 107947913 -74467329 - AluSg SINE Alu -11 299 11 1335 208 80 10 chr6 107948144 107948318 -74466924 - AluJo SINE Alu -4 308 105 180 0 0 0 chr6 107948318 107948338 -74466904 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1335 208 80 10 chr6 107948338 107948451 -74466791 - AluJo SINE Alu -207 105 1 21 0 0 0 chr6 107948477 107948498 -74466744 + AT_rich Low_complexity Low_complexity 1 21 0 374 296 15 22 chr6 107948746 107948881 -74466361 + MER20B DNA MER1_type 43 176 -607 372 268 63 24 chr6 107948982 107949109 -74466133 - L2 LINE L2 0 3272 3141 652 315 159 20 chr6 107949291 107949970 -74465272 - L2 LINE L2 0 3313 2550 562 256 191 24 chr6 107949988 107950281 -74464961 - L2 LINE L2 -941 2373 2032 391 300 194 54 chr6 107950339 107950555 -74464687 - L2 LINE L2 -354 2960 2776 2450 127 40 33 chr6 107950555 107950980 -74464262 + MSTA LTR MaLR 1 428 0 391 300 194 54 chr6 107950980 107951654 -74463588 - L2 LINE L2 -538 2776 1945 3065 222 68 6 chr6 107952011 107952794 -74462448 - MER97a DNA MER1_type? -59 835 5 22 0 0 0 chr6 108003348 108003370 -74411872 + AT_rich Low_complexity Low_complexity 1 22 0 502 227 144 48 chr6 108004034 108004325 -74410917 - L1ME LINE L1 -559 5603 5285 278 296 53 45 chr6 108004408 108004651 -74410591 - L1ME LINE L1 -905 5241 4997 673 206 122 0 chr6 108005739 108005870 -74409372 + FRAM SINE Alu 1 146 -30 666 0 0 0 chr6 108005873 108005947 -74409295 + (TAAAA)n Simple_repeat Simple_repeat 1 74 0 211 265 52 59 chr6 108007192 108007328 -74407914 - L3 LINE CR1 -32 1545 1411 209 260 68 14 chr6 108007401 108007474 -74407768 - L3 LINE CR1 -199 1378 1302 1843 130 47 0 chr6 108008235 108008511 -74406731 - AluSx SINE Alu -23 289 1 2191 110 0 0 chr6 108009364 108009654 -74405588 - AluSx SINE Alu -22 290 1 237 313 112 75 chr6 108010344 108010478 -74404764 + L2 LINE L2 3134 3272 0 1339 252 100 2 chr6 108011163 108011624 -74403618 - MLT1E LTR MaLR 0 593 1 642 326 16 101 chr6 108013934 108014311 -74400931 - L2 LINE L2 0 3272 2928 3500 122 23 73 chr6 108014359 108015089 -74400153 - L1MA4 LINE L1 -6 6294 5601 986 137 23 17 chr6 108015089 108015255 -74399987 - L1PA16 LINE L1 0 6166 5991 329 234 117 9 chr6 108016851 108016962 -74398280 + MER103 DNA DNA 35 157 -9 318 297 144 4 chr6 108018071 108018327 -74396915 - L1ME4a LINE L1 -5 6116 5825 248 187 40 27 chr6 108018505 108018580 -74396662 + L2 LINE L2 2921 2996 -317 271 326 139 28 chr6 108018588 108018732 -74396510 + L2 LINE L2 3108 3267 -5 272 250 52 81 chr6 108018749 108018921 -74396321 - L1ME4a LINE L1 -377 5744 5578 303 292 143 13 chr6 108019045 108019199 -74396043 - L1ME4a LINE L1 -718 5444 5271 29 0 0 0 chr6 108019269 108019298 -74395944 + AT_rich Low_complexity Low_complexity 1 29 0 5391 106 45 0 chr6 108019349 108020176 -74395066 + L1PB2 LINE L1 5288 6151 0 309 307 31 31 chr6 108020208 108020371 -74394871 - L1ME4a LINE L1 -1049 5097 4935 488 293 100 23 chr6 108020632 108021280 -74393962 + L1ME2 LINE L1 5149 5859 -295 352 335 64 23 chr6 108021719 108021937 -74393305 - L1ME4a LINE L1 -3339 2807 2581 326 208 107 81 chr6 108022108 108022257 -74392985 - L1ME4a LINE L1 -3775 2371 2219 2163 117 0 0 chr6 108022283 108022589 -74392653 + AluSx SINE Alu 1 306 0 1278 253 71 46 chr6 108022594 108023315 -74391927 + MER21B LTR ERV1 17 809 -54 186 43 0 0 chr6 108024339 108024362 -74390880 + (CA)n Simple_repeat Simple_repeat 2 24 0 1264 179 0 22 chr6 108024535 108024758 -74390484 - AluJb SINE Alu -76 236 19 8351 195 20 14 chr6 108024767 108025294 -74389948 - L1PA15-16 LINE L1 -2367 4482 3959 207 0 0 0 chr6 108025294 108025317 -74389925 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8351 195 20 14 chr6 108025317 108027580 -74387662 - L1PA15-16 LINE L1 -2890 3959 1670 238 335 110 41 chr6 108028702 108029021 -74386221 + L2 LINE L2 675 1015 -2299 351 0 0 0 chr6 108029135 108029174 -74386068 + (CA)n Simple_repeat Simple_repeat 1 39 0 234 366 9 0 chr6 108029683 108029795 -74385447 - L2 LINE L2 -2 3311 3199 359 323 196 25 chr6 108029852 108030366 -74384876 + L2 LINE L2 1742 2343 -971 982 295 153 18 chr6 108031215 108032360 -74382882 + L1MEc LINE L1 1012 2310 -4086 476 123 14 0 chr6 108032501 108032574 -74382668 + MADE1 DNA Mariner 7 80 0 202 246 0 16 chr6 108032581 108032642 -74382600 + (TA)n Simple_repeat Simple_repeat 2 61 0 1069 145 13 97 chr6 108032698 108032926 -74382316 - MER2 DNA MER2_type -135 210 2 206 335 53 113 chr6 108032931 108033197 -74382045 + L2 LINE L2 3004 3253 -19 22 0 0 0 chr6 108033333 108033355 -74381887 + AT_rich Low_complexity Low_complexity 1 22 0 889 250 24 9 chr6 108033461 108033673 -74381569 + MIR SINE MIR 11 225 -37 1071 138 0 0 chr6 108034650 108034863 -74380379 + (TA)n Simple_repeat Simple_repeat 1 213 0 26 0 0 0 chr6 108035004 108035030 -74380212 + AT_rich Low_complexity Low_complexity 1 26 0 32 57 0 0 chr6 108036905 108036958 -74378284 + AT_rich Low_complexity Low_complexity 1 53 0 198 282 183 0 chr6 108039843 108039914 -74375328 - L2 LINE L2 -3 3269 3186 2897 221 41 18 chr6 108042243 108042981 -74372261 + L1ME1 LINE L1 5427 6334 0 465 266 111 80 chr6 108043059 108043446 -74371796 + L1ME4a LINE L1 5529 5927 -194 1397 249 94 23 chr6 108043833 108044311 -74370931 - MLT1E3 LTR MaLR 0 624 113 21 0 0 0 chr6 108044316 108044337 -74370905 + AT_rich Low_complexity Low_complexity 1 21 0 861 185 196 0 chr6 108044342 108044531 -74370711 - MLT1E1 LTR MaLR -426 228 3 359 41 20 0 chr6 108044659 108044708 -74370534 + (CA)n Simple_repeat Simple_repeat 2 51 0 625 250 39 0 chr6 108044884 108045040 -74370202 - MER117 DNA MER1_type -35 162 1 252 0 0 0 chr6 108048035 108048063 -74367179 + (TC)n Simple_repeat Simple_repeat 1 28 0 215 31 31 0 chr6 108048062 108048094 -74367148 + (CA)n Simple_repeat Simple_repeat 1 33 0 * 327 286 0 71 chr6 108048988 108049100 -74366142 - L2 LINE L2 -1 3271 3168 1254 199 17 0 chr6 108049196 108049492 -74365750 - L1MA4 LINE L1 0 6300 6000 2240 213 112 75 chr6 108052935 108053640 -74361602 + MER21B LTR ERV1 1 731 -132 2608 164 42 46 chr6 108053866 108054391 -74360851 - LTR26B LTR ERV1 -7 524 2 2085 90 0 7 chr6 108054781 108055081 -74360161 - L1PA13 LINE L1 0 6163 5866 2083 113 0 55 chr6 108056197 108056526 -74358716 - AluY SINE Alu 0 311 1 42634 34 22 2 chr6 108056564 108062591 -74352651 + L1PA2 LINE L1 1 6154 -1 670 253 11 21 chr6 108062616 108062806 -74352436 - MIR SINE MIR -24 238 51 453 305 8 0 chr6 108065758 108065876 -74349366 + MIR SINE MIR 8 126 -136 806 294 117 29 chr6 108065984 108066369 -74348873 - MLT1J2 LTR MaLR -13 437 19 206 340 124 0 chr6 108066524 108066621 -74348621 + MIR SINE MIR 151 259 -3 223 260 0 0 chr6 108067509 108067559 -74347683 - MIR SINE MIR 0 262 213 2276 124 16 11 chr6 108067714 108068086 -74347156 + THE1C LTR MaLR 1 374 -1 184 295 115 0 chr6 108068273 108068351 -74346891 + MIR SINE MIR 19 105 -157 2177 128 3 0 chr6 108068384 108068689 -74346553 - AluSx SINE Alu -6 306 1 1805 216 82 55 chr6 108068810 108069357 -74345885 + MLT1E3 LTR MaLR 7 568 -56 1426 196 4 11 chr6 108069359 108069629 -74345613 + AluJb SINE Alu 1 268 -44 344 203 0 0 chr6 108069648 108069722 -74345520 + MLT1E3 LTR MaLR 581 654 0 1764 164 66 17 chr6 108069852 108070200 -74345042 + MLT1A1 LTR MaLR 1 365 0 7754 17 6 0 chr6 108070241 108071161 -74344081 - L1PA3 LINE L1 0 6155 5233 193 44 0 89 chr6 108071520 108071565 -74343677 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 311 237 133 17 chr6 108071577 108071750 -74343492 + L1ME4a LINE L1 5928 6120 -1 190 350 126 19 chr6 108071916 108072019 -74343223 + MIR SINE MIR 37 150 -58 277 137 0 0 chr6 108072417 108072468 -74342774 - L1PB4 LINE L1 -7 6149 6099 467 260 14 142 chr6 108073170 108073458 -74341784 + MIR SINE MIR 12 262 0 295 244 0 63 chr6 108075066 108075146 -74340096 + MIR SINE MIR 74 147 -62 280 304 71 65 chr6 108076225 108076393 -74338849 - MIR SINE MIR 0 262 94 23 68 0 0 chr6 108077222 108077266 -74337976 + AT_rich Low_complexity Low_complexity 1 44 0 184 154 138 62 chr6 108077368 108077433 -74337809 - L3 LINE CR1 -558 1019 950 21 0 0 0 chr6 108077608 108077629 -74337613 + AT_rich Low_complexity Low_complexity 1 21 0 650 24 0 0 chr6 108078702 108078784 -74336458 + L1PA2 LINE L1 6074 6155 0 368 310 152 6 chr6 108078825 108078996 -74336246 - MIR SINE MIR -36 226 31 204 328 82 33 chr6 108079015 108079137 -74336105 - L2 LINE L2 -24 3289 3162 334 340 110 0 chr6 108079147 108079347 -74335895 + L1MC4 LINE L1 3718 3939 -2207 415 281 94 53 chr6 108079371 108079670 -74335572 + L1MC4 LINE L1 4171 4481 -1665 671 295 132 12 chr6 108079681 108080023 -74335219 + L1MC4 LINE L1 5523 5905 -1903 23 0 0 0 chr6 108080073 108080096 -74335146 + AT_rich Low_complexity Low_complexity 1 23 0 208 368 65 22 chr6 108080214 108080399 -74334843 - L2 LINE L2 -255 3017 2825 229 303 63 35 chr6 108081114 108081256 -74333986 - L2 LINE L2 -2 3311 3166 472 305 150 5 chr6 108081609 108081796 -74333446 - MIR SINE MIR -2 260 47 1454 161 158 0 chr6 108081949 108082209 -74333033 + AluJb SINE Alu 2 302 0 249 163 146 81 chr6 108083092 108083215 -74332027 + L1MC5 LINE L1 7630 7760 -201 21 0 0 0 chr6 108083437 108083458 -74331784 + AT_rich Low_complexity Low_complexity 1 21 0 237 255 43 21 chr6 108084991 108085085 -74330157 + L1MC4 LINE L1 6608 6703 -1339 26 50 0 0 chr6 108085228 108085268 -74329974 + AT_rich Low_complexity Low_complexity 1 40 0 468 282 97 28 chr6 108085294 108085510 -74329732 + MIR SINE MIR 32 262 0 193 254 63 32 chr6 108085603 108085666 -74329576 + L2 LINE L2 3245 3309 -4 315 104 0 0 chr6 108086331 108086379 -74328863 + (TG)n Simple_repeat Simple_repeat 2 49 0 369 0 0 0 chr6 108087161 108087202 -74328040 + (TG)n Simple_repeat Simple_repeat 2 42 0 1096 229 4 17 chr6 108089670 108089910 -74325332 + MER8 DNA MER2_type 3 239 0 254 336 72 24 chr6 108090544 108090669 -74324573 - MIR3 SINE MIR -69 139 9 2303 89 0 3 chr6 108093382 108093674 -74321568 + AluSq SINE Alu 1 291 -22 326 267 87 27 chr6 108094456 108094606 -74320636 + MER20 DNA MER1_type 61 219 0 559 332 21 0 chr6 108095646 108095838 -74319404 - MIR SINE MIR -33 229 35 1685 182 14 3 chr6 108095905 108096196 -74319046 - AluJo SINE Alu -18 294 1 266 239 0 28 chr6 108096710 108096781 -74318461 - MIR SINE MIR -12 250 182 195 258 0 65 chr6 108098390 108098452 -74316790 + MIR3 SINE MIR 138 195 -13 2356 189 61 6 chr6 108098875 108099707 -74315535 + L1MD1 LINE L1 4839 5709 -533 4703 165 34 3 chr6 108099748 108100425 -74314817 - L1MB3 LINE L1 -1 6182 5471 276 30 0 0 chr6 108100425 108100458 -74314784 + (TG)n Simple_repeat Simple_repeat 2 34 0 4703 165 34 3 chr6 108100458 108100652 -74314590 - L1MB3 LINE L1 -712 5471 5284 2507 178 57 0 chr6 108100656 108101144 -74314098 + L1MD1 LINE L1 5706 6221 -21 299 291 84 47 chr6 108101267 108102005 -74313237 + L1M4 LINE L1 2147 2911 -3235 3397 227 48 48 chr6 108102075 108103211 -74312031 + L1MC4 LINE L1 6905 8040 -2 401 273 134 23 chr6 108103428 108103600 -74311642 + MIR SINE MIR 26 216 -46 2729 19 3 0 chr6 108104059 108104367 -74310875 - AluY SINE Alu -2 309 1 233 291 248 8 chr6 108104945 108105062 -74310180 - L2 LINE L2 -3 3269 3125 299 335 165 5 chr6 108105250 108105474 -74309768 - MIR SINE MIR 0 262 3 2546 156 74 4 chr6 108108172 108108686 -74306556 - L1MA9 LINE L1 -4 6308 5759 3234 161 52 58 chr6 108108691 108109974 -74305268 - L1MA9 LINE L1 -379 5933 4623 4912 192 27 94 chr6 108109976 108111491 -74303751 - L1MA9 LINE L1 -2059 4087 2674 21 0 0 0 chr6 108113083 108113104 -74302138 + AT_rich Low_complexity Low_complexity 1 21 0 392 349 147 26 chr6 108113104 108113519 -74301723 - L2 LINE L2 0 3272 2808 2083 134 0 10 chr6 108113746 108114027 -74301215 + AluSx SINE Alu 1 96 -216 198 0 0 0 chr6 108114027 108114049 -74301193 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 2083 134 0 10 chr6 108114049 108114264 -74300978 + AluSx SINE Alu 96 312 0 228 149 0 0 chr6 108114268 108114315 -74300927 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 4544 44 25 0 chr6 108117187 108117753 -74297489 + LTR19B LTR ERV1 1 580 0 21 36 0 0 chr6 108118098 108118126 -74297116 + AT_rich Low_complexity Low_complexity 1 28 0 1322 166 4 61 chr6 108119583 108119903 -74295339 + AluJo SINE Alu 34 312 0 2138 124 7 0 chr6 108120377 108120675 -74294567 + AluSx SINE Alu 1 300 -12 186 394 58 0 chr6 108120844 108120948 -74294294 + L2 LINE L2 3199 3308 -5 21 0 0 0 chr6 108121057 108121078 -74294164 + AT_rich Low_complexity Low_complexity 1 21 0 2209 117 10 0 chr6 108121123 108121432 -74293810 - AluSx SINE Alu 0 312 1 490 293 0 43 chr6 108122980 108123144 -74292098 - L2 LINE L2 -1 3312 3156 2015 130 7 7 chr6 108123702 108123994 -74291248 - AluSx SINE Alu -20 292 1 786 146 79 6 chr6 108124137 108124179 -74291063 + L1MA8 LINE L1 6110 6148 -143 195 42 0 0 chr6 108124179 108124203 -74291039 + (CA)n Simple_repeat Simple_repeat 1 24 0 786 146 79 6 chr6 108124203 108124325 -74290917 + L1MA8 LINE L1 6148 6286 -5 406 264 19 9 chr6 108124837 108124943 -74290299 - L2 LINE L2 -4 3309 3203 1679 166 0 18 chr6 108125917 108126222 -74289020 - AluJb SINE Alu 0 310 11 290 263 12 0 chr6 108126234 108126314 -74288928 + MIR SINE MIR 169 249 -13 2765 76 3 0 chr6 108126451 108126805 -74288437 + THE1A LTR MaLR 1 355 0 512 258 108 106 chr6 108129925 108130147 -74285095 + L1ME LINE L1 5386 5606 -515 1391 174 17 86 chr6 108130147 108130508 -74284734 - MER44D DNA MER2_type 0 609 4 512 258 108 106 chr6 108130508 108130578 -74284664 + L1ME LINE L1 5606 5674 -447 2151 118 3 3 chr6 108130578 108130875 -74284367 + AluSx SINE Alu 1 297 -15 512 258 108 106 chr6 108130875 108131019 -74284223 + L1ME LINE L1 5674 5824 -297 21 104 0 0 chr6 108131970 108132047 -74283195 + AT_rich Low_complexity Low_complexity 1 77 0 1511 166 0 16 chr6 108133397 108133644 -74281598 + AluJo SINE Alu 45 287 -25 836 220 28 6 chr6 108133719 108133901 -74281341 - MER5A DNA MER1_type 0 189 4 1627 263 168 12 chr6 108134076 108135040 -74280202 + L2 LINE L2 2048 3175 -138 850 162 7 20 chr6 108135073 108135221 -74280021 + AluJb SINE Alu 131 276 -36 237 33 0 0 chr6 108135228 108135258 -74279984 + (CA)n Simple_repeat Simple_repeat 1 30 0 416 243 90 0 chr6 108135294 108135405 -74279837 + L2 LINE L2 3193 3313 0 409 190 13 0 chr6 108136751 108136830 -74278412 + MER116 DNA Mariner 1 80 0 310 238 30 30 chr6 108136868 108136969 -74278273 + MIR SINE MIR 21 121 -141 239 53 0 26 chr6 108137477 108137515 -74277727 + (CA)n Simple_repeat Simple_repeat 1 37 0 276 321 0 0 chr6 108137771 108137852 -74277390 + L2 LINE L2 3226 3306 -7 311 291 31 8 chr6 108138055 108138182 -74277060 - MIR SINE MIR -2 260 131 2164 112 6 16 chr6 108138215 108138527 -74276715 - AluSc SINE Alu 0 309 1 323 314 14 36 chr6 108138527 108138667 -74276575 - MIR SINE MIR -120 142 6 6251 132 9 3 chr6 108139420 108140609 -74274633 + L1PB2 LINE L1 4955 6151 0 186 313 0 0 chr6 108141268 108141335 -74273907 + MIR SINE MIR 187 253 -9 652 303 17 8 chr6 108141603 108141844 -74273398 - MIR SINE MIR 0 262 20 299 240 23 131 chr6 108145229 108145450 -74269792 + L1MC4 LINE L1 7842 8038 -4 210 37 0 0 chr6 108145935 108145962 -74269280 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr6 108148178 108148206 -74267036 + GC_rich Low_complexity Low_complexity 1 28 0 297 183 0 0 chr6 108151382 108151442 -74263800 + (TAA)n Simple_repeat Simple_repeat 3 62 0 288 0 0 0 chr6 108152157 108152189 -74263053 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 324 0 0 0 chr6 108152188 108152224 -74263018 + (CA)n Simple_repeat Simple_repeat 1 36 0 292 293 92 63 chr6 108152570 108152809 -74262433 - L2 LINE L2 -79 3193 2948 266 312 101 53 chr6 108153260 108153657 -74261585 - L2 LINE L2 -899 2415 2000 544 227 116 34 chr6 108153669 108153876 -74261366 + L2 LINE L2 3000 3223 -90 185 0 40 0 chr6 108155147 108155172 -74260070 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 25 31 0 0 chr6 108158702 108158734 -74256508 + AT_rich Low_complexity Low_complexity 1 32 0 657 25 0 0 chr6 108159484 108159563 -74255679 + (TC)n Simple_repeat Simple_repeat 2 80 0 198 0 0 0 chr6 108162291 108162313 -74252929 + (TTG)n Simple_repeat Simple_repeat 2 23 0 312 137 0 0 chr6 108163301 108163352 -74251890 + (T)n Simple_repeat Simple_repeat 1 51 0 22 35 0 0 chr6 108170113 108170142 -74245100 + AT_rich Low_complexity Low_complexity 1 29 0 210 71 0 0 chr6 108170227 108170255 -74244987 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr6 108170446 108170471 -74244771 + AT_rich Low_complexity Low_complexity 1 25 0 1018 173 32 22 chr6 108171240 108171425 -74243817 - MER5A DNA MER1_type -2 187 1 764 183 53 88 chr6 108172019 108172304 -74242938 + ORSL DNA AcHobo 1 275 0 1547 254 117 27 chr6 108172719 108173242 -74242000 - L1MC4a LINE L1 -1898 5910 5341 342 238 48 12 chr6 108175135 108175219 -74240023 + MER91A DNA MER1_type 109 195 -1 201 293 20 40 chr6 108175944 108176043 -74239199 - MIR SINE MIR -81 181 85 2598 57 0 0 chr6 108176217 108176517 -74238725 - AluY SINE Alu -7 304 5 3644 192 29 51 chr6 108176525 108177415 -74237827 - L1MD2 LINE L1 -14 6345 5475 1416 168 0 4 chr6 108177448 108177674 -74237568 - AluJb SINE Alu -87 225 1 947 185 66 36 chr6 108177674 108178033 -74237209 - L1MD2 LINE L1 -746 5400 5123 1420 245 83 19 chr6 108178189 108178928 -74236314 - L2 LINE L2 -73 3240 2448 1765 164 0 25 chr6 108178945 108179251 -74235991 + AluJo SINE Alu 3 301 0 705 270 70 36 chr6 108179329 108179659 -74235583 + L1MC4a LINE L1 5554 5894 -1914 2247 99 34 0 chr6 108179910 108180203 -74235039 + AluSp SINE Alu 2 304 -9 717 201 22 22 chr6 108180231 108180370 -74234872 - FRAM SINE Alu -39 137 1 258 315 22 0 chr6 108181621 108181710 -74233532 + MIR3 SINE MIR 114 204 -4 413 328 138 0 chr6 108181731 108181920 -74233322 - MIR SINE MIR 0 262 48 310 284 12 0 chr6 108181960 108182041 -74233201 - MARNA DNA Mariner -66 520 439 1613 188 31 10 chr6 108182090 108182378 -74232864 - AluJo SINE Alu -18 294 1 445 243 7 79 chr6 108183241 108183381 -74231861 + MIR SINE MIR 15 144 -118 576 310 114 27 chr6 108183445 108183893 -74231349 + LTR33 LTR ERVL 23 509 -12 1802 180 3 3 chr6 108184876 108185171 -74230071 - AluJo SINE Alu -17 295 1 28 29 0 0 chr6 108187069 108187104 -74228138 + AT_rich Low_complexity Low_complexity 1 35 0 430 294 223 11 chr6 108188214 108188483 -74226759 + MARNA DNA Mariner 99 424 -162 1379 208 52 81 chr6 108191480 108191628 -74223614 - MLT1C LTR MaLR 0 467 316 3651 124 6 2 chr6 108191628 108192153 -74223089 + MER1A DNA MER1_type 1 527 0 1379 208 52 81 chr6 108192153 108192485 -74222757 - MLT1C LTR MaLR -151 316 1 2165 118 0 3 chr6 108192514 108192810 -74222432 - AluSg SINE Alu -15 295 1 254 265 153 24 chr6 108195372 108195542 -74219700 + L1ME LINE L1 5694 5885 -279 677 260 31 0 chr6 108195566 108195758 -74219484 - MLT1F1 LTR MaLR -2 565 368 525 176 75 140 chr6 108195774 108196052 -74219190 - MLT1F1 LTR MaLR -282 272 1 1950 122 33 79 chr6 108196916 108197309 -74217933 - THE1C LTR MaLR 0 375 1 4072 166 73 23 chr6 108197394 108198445 -74216797 - L1MB3 LINE L1 -16 6167 5072 7169 43 28 1 chr6 108198601 108199228 -74216014 - L1PA7 LINE L1 -3 6151 5543 2356 97 0 3 chr6 108199228 108199526 -74215716 + AluY SINE Alu 1 297 -14 7169 43 28 1 chr6 108199526 108200564 -74214678 - L1PA7 LINE L1 -611 5543 4464 8981 106 4 6 chr6 108200564 108201927 -74213315 + L1P LINE L1 1479 2838 -3308 304 143 20 0 chr6 108203619 108203668 -74211574 - L2 LINE L2 -4 3268 3219 1043 167 11 21 chr6 108203880 108204066 -74211176 + AluJb SINE Alu 129 312 0 895 241 172 50 chr6 108206488 108207212 -74208030 - L2 LINE L2 0 3313 2423 2404 31 42 0 chr6 108211110 108211399 -74203843 + AluY SINE Alu 1 301 -10 254 219 16 0 chr6 108212543 108212607 -74202635 + (TTA)n Simple_repeat Simple_repeat 2 66 0 1768 138 84 4 chr6 108212650 108212925 -74202317 + AluSq SINE Alu 2 298 -15 1658 150 77 7 chr6 108212941 108213214 -74202028 + AluSx SINE Alu 1 292 -20 270 300 43 0 chr6 108213659 108213729 -74201513 - MIR SINE MIR -72 136 64 494 285 21 38 chr6 108213786 108213972 -74201270 - MER5A DNA MER1_type 0 189 7 970 207 9 5 chr6 108214495 108214712 -74200530 - L1MD2 LINE L1 -7 6352 6135 189 74 0 0 chr6 108216101 108216128 -74199114 + (TA)n Simple_repeat Simple_repeat 2 28 0 296 270 20 17 chr6 108217424 108217601 -74197641 - MIR SINE MIR -12 250 21 23 54 0 0 chr6 108218172 108218209 -74197033 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 108219418 108219439 -74195803 + AT_rich Low_complexity Low_complexity 1 21 0 250 220 34 0 chr6 108220855 108220914 -74194328 + (TATG)n Simple_repeat Simple_repeat 2 62 0 222 356 150 17 chr6 108221562 108221742 -74193500 + L2 LINE L2 2554 2757 -557 186 133 0 0 chr6 108221907 108221937 -74193305 + (TTC)n Simple_repeat Simple_repeat 2 31 0 1504 155 120 28 chr6 108222055 108222372 -74192870 + MER7A DNA MER2_type 1 344 -2 21 0 0 0 chr6 108222528 108222549 -74192693 + AT_rich Low_complexity Low_complexity 1 21 0 260 195 0 0 chr6 108222663 108222704 -74192538 - MER44D DNA MER2_type -1 604 564 * 2440 163 5 9 chr6 108222700 108223135 -74192107 + MER44D DNA MER2_type 301 605 0 438 287 21 28 chr6 108224263 108224406 -74190836 - MIR SINE MIR -119 143 2 352 252 42 25 chr6 108224658 108224777 -74190465 + MIR3 SINE MIR 66 186 -22 318 260 21 31 chr6 108225487 108225583 -74189659 - MIR SINE MIR -70 192 98 25 51 0 0 chr6 108225818 108225857 -74189385 + AT_rich Low_complexity Low_complexity 1 39 0 1634 141 127 0 chr6 108226402 108226678 -74188564 + AluJb SINE Alu 2 312 0 1212 166 22 76 chr6 108226890 108227009 -74188233 + L1MC3 LINE L1 7450 7574 -211 471 134 0 0 chr6 108227009 108227091 -74188151 + L1MA4 LINE L1 6215 6296 -4 1212 166 22 76 chr6 108227091 108227326 -74187916 + L1MC3 LINE L1 7574 7785 0 1574 177 26 19 chr6 108229318 108229628 -74185614 - AluJo SINE Alu 0 312 1 401 78 0 0 chr6 108230066 108230130 -74185112 + MER41A LTR ERV1 402 465 -89 204 40 0 0 chr6 108230634 108230659 -74184583 + (TG)n Simple_repeat Simple_repeat 2 26 0 469 252 145 13 chr6 108231273 108231432 -74183810 + MIR SINE MIR 81 260 -2 200 200 0 0 chr6 108233460 108233500 -74181742 + T-rich Low_complexity Low_complexity 1 40 0 381 43 0 0 chr6 108233824 108233871 -74181371 + (TG)n Simple_repeat Simple_repeat 2 48 0 252 0 0 0 chr6 108233871 108233899 -74181343 + (TA)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr6 108233898 108233919 -74181323 + (T)n Simple_repeat Simple_repeat 1 21 0 * 191 59 0 29 chr6 108234585 108234619 -74180623 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1264 151 162 12 chr6 108235492 108235751 -74179491 + AluJb SINE Alu 1 298 -4 201 261 76 22 chr6 108236574 108236666 -74178576 - MIR SINE MIR -138 124 28 2269 97 0 0 chr6 108236958 108237257 -74177985 - AluSg1 SINE Alu -9 300 2 405 260 12 0 chr6 108237370 108237484 -74177758 + L1ME4a LINE L1 5727 5844 -277 1409 253 105 30 chr6 108237573 108237978 -74177264 + L1MC4 LINE L1 6345 6803 -1239 1293 224 58 4 chr6 108237978 108238255 -74176987 - AluJb SINE Alu -18 294 3 1409 253 105 30 chr6 108238255 108238391 -74176851 + L1MC4 LINE L1 6803 6927 -1115 2148 210 130 30 chr6 108238391 108239152 -74176090 + L1MC4a LINE L1 6243 7277 0 199 89 0 44 chr6 108239375 108239420 -74175822 + (TA)n Simple_repeat Simple_repeat 2 44 0 384 261 44 37 chr6 108240000 108240181 -74175061 - HAL1b LINE L1 -19 6058 1180 835 275 28 12 chr6 108240437 108240688 -74174554 + L2 LINE L2 2365 2619 -695 1460 170 38 28 chr6 108240694 108241012 -74174230 + Charlie1 DNA MER1_type 2212 2532 -229 762 333 58 36 chr6 108241047 108241464 -74173778 + L2 LINE L2 2886 3311 -2 228 317 12 24 chr6 108242093 108242175 -74173067 - L2 LINE L2 -4 3268 3188 193 372 18 35 chr6 108242264 108242377 -74172865 - L2 LINE L2 -195 3077 2967 633 268 11 91 chr6 108242731 108242996 -74172246 + L1ME1 LINE L1 63 306 -6090 3121 236 116 27 chr6 108243002 108243892 -74171350 + L1ME1 LINE L1 606 1632 -4764 2360 75 7 3 chr6 108243892 108244199 -74171043 + AluSc SINE Alu 1 308 -1 3121 236 116 27 chr6 108244199 108244507 -74170735 + L1ME1 LINE L1 1632 1911 -4485 2134 137 27 3 chr6 108244549 108244884 -74170358 + MER2 DNA MER2_type 1 343 -1 222 174 0 0 chr6 108244916 108244962 -74170280 + (TA)n Simple_repeat Simple_repeat 2 47 0 6964 240 63 40 chr6 108244967 108246664 -74168578 + L1ME1 LINE L1 2320 3975 -2240 2139 104 0 3 chr6 108246664 108246961 -74168281 - AluSc SINE Alu -7 302 7 6964 240 63 40 chr6 108246961 108247100 -74168142 + L1ME1 LINE L1 3975 4109 -2106 1279 193 67 30 chr6 108247100 108247370 -74167872 - AluJo SINE Alu -30 282 3 6964 240 63 40 chr6 108247370 108247957 -74167285 + L1ME1 LINE L1 4109 4802 -1413 1791 223 63 9 chr6 108248514 108249052 -74166190 + L1ME1 LINE L1 4851 5417 -798 2092 226 17 44 chr6 108249095 108249688 -74165554 + L1ME1 LINE L1 5524 6100 -135 22 0 0 0 chr6 108249980 108250002 -74165240 + AT_rich Low_complexity Low_complexity 1 22 0 373 329 50 50 chr6 108250163 108250289 -74164953 - L2 LINE L2 -203 3069 2941 2012 156 6 9 chr6 108250289 108250629 -74164613 - MER44D DNA MER2_type 0 609 1 373 329 50 50 chr6 108250629 108250642 -74164600 - L2 LINE L2 -330 2942 2930 21 36 0 0 chr6 108251262 108251290 -74163952 + AT_rich Low_complexity Low_complexity 1 28 0 305 279 0 81 chr6 108252718 108252829 -74162413 - L2 LINE L2 -67 3205 3104 21 0 0 0 chr6 108253249 108253270 -74161972 + AT_rich Low_complexity Low_complexity 1 21 0 280 292 69 31 chr6 108253429 108253559 -74161683 + MIR SINE MIR 19 153 -55 303 71 0 0 chr6 108253627 108253669 -74161573 + (TAA)n Simple_repeat Simple_repeat 2 43 0 21 82 0 0 chr6 108254324 108254373 -74160869 + AT_rich Low_complexity Low_complexity 1 49 0 943 184 0 0 chr6 108257339 108257507 -74157735 + AluJb SINE Alu 135 302 -10 836 216 125 4 chr6 108258611 108258875 -74156367 - L1M4 LINE L1 -2952 3194 2899 659 228 26 92 chr6 108258867 108259170 -74156072 - L1M4 LINE L1 -3630 2516 2234 * 1205 119 73 5 chr6 108259172 108259390 -74155852 + L1MA2 LINE L1 5972 6204 -100 527 294 127 30 chr6 108260546 108260845 -74154397 + MARNA DNA Mariner 9 336 -250 2089 110 13 13 chr6 108261059 108261358 -74153884 + AluSx SINE Alu 1 299 -13 438 20 0 0 chr6 108262240 108262291 -74152951 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 264 91 72 chr6 108264160 108264535 -74150707 - L1ME LINE L1 -392 5729 5348 32 26 0 0 chr6 108264584 108264623 -74150619 + AT_rich Low_complexity Low_complexity 1 39 0 23 68 0 0 chr6 108265301 108265345 -74149897 + AT_rich Low_complexity Low_complexity 1 44 0 329 251 344 18 chr6 108265369 108265532 -74149710 - MIR SINE MIR -27 235 20 2143 130 116 22 chr6 108265588 108266003 -74149239 - L1MA4 LINE L1 0 6300 5847 231 36 0 0 chr6 108266953 108266981 -74148261 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 353 232 116 0 chr6 108267240 108267335 -74147907 + L1MA9 LINE L1 6167 6272 -40 368 255 85 125 chr6 108267707 108267907 -74147335 - MIR SINE MIR -65 197 6 1342 285 118 25 chr6 108267934 108268534 -74146708 + L2 LINE L2 1343 1998 -1316 26 0 0 0 chr6 108268558 108268584 -74146658 + AT_rich Low_complexity Low_complexity 1 26 0 280 293 67 12 chr6 108268596 108268620 -74146622 - HAL1b LINE L1 -3 1345 1322 465 271 87 42 chr6 108268620 108268908 -74146334 - L1ME4a LINE L1 -48 6073 1173 5695 170 37 23 chr6 108268914 108269577 -74145665 - L1PA16 LINE L1 -8 6158 5506 2000 131 0 3 chr6 108269577 108269874 -74145368 + AluSx SINE Alu 1 296 -16 5695 170 37 23 chr6 108269874 108270244 -74144998 - L1PA16 LINE L1 -660 5506 5143 1799 102 0 8 chr6 108270244 108270527 -74144715 - AluY SINE Alu 0 324 44 5695 170 37 23 chr6 108270527 108270863 -74144379 - L1PA16 LINE L1 -1023 5143 4813 2250 71 0 10 chr6 108270863 108271158 -74144084 - AluY SINE Alu -2 309 18 5695 170 37 23 chr6 108271158 108271953 -74143289 - L1PA16 LINE L1 -1353 4813 3958 1205 255 207 33 chr6 108271958 108273054 -74142188 + L2 LINE L2 1989 3307 -6 543 239 225 28 chr6 108273049 108273262 -74141980 - MIR SINE MIR 0 262 8 * 1898 171 11 22 chr6 108273580 108273949 -74141293 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr6 108276015 108276039 -74139203 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 108276172 108276207 -74139035 + AT_rich Low_complexity Low_complexity 1 35 0 201 306 163 0 chr6 108278078 108278176 -74137066 + MIR SINE MIR 149 262 0 184 294 59 82 chr6 108278921 108279091 -74136151 - L3 LINE CR1 -420 1157 992 276 127 0 0 chr6 108279213 108279268 -74135974 + (CA)n Simple_repeat Simple_repeat 2 56 0 320 221 32 32 chr6 108279269 108279364 -74135878 + L2 LINE L2 3215 3309 -4 4222 113 6 3 chr6 108279762 108280383 -74134859 - L1PA15 LINE L1 -13 6152 5530 5205 170 15 19 chr6 108280383 108281676 -74133566 - L1P4 LINE L1 -570 5595 4295 198 0 0 0 chr6 108282069 108282091 -74133151 + (TTA)n Simple_repeat Simple_repeat 3 24 0 37507 49 6 2 chr6 108282091 108288196 -74127046 - L1PA3 LINE L1 -18 6137 1 329 226 53 68 chr6 108289596 108289729 -74125513 + MIR SINE MIR 131 261 -1 521 242 47 0 chr6 108290805 108290933 -74124309 - MER94 DNA DNA 0 134 1 28 0 0 0 chr6 108292311 108292339 -74122903 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 108292826 108292847 -74122395 + AT_rich Low_complexity Low_complexity 1 21 0 336 329 13 0 chr6 108295361 108295513 -74119729 + (TA)n Simple_repeat Simple_repeat 1 154 0 3901 148 38 55 chr6 108295973 108296786 -74118456 + L1MA7 LINE L1 5476 6274 -17 275 120 80 0 chr6 108296800 108296850 -74118392 + L1M4 LINE L1 5661 5714 -470 444 278 217 34 chr6 108297099 108297300 -74117942 + MIR SINE MIR 9 252 -10 304 256 83 17 chr6 108297311 108297491 -74117751 - L1M4 LINE L1 -2976 3170 2979 429 354 34 17 chr6 108297853 108298144 -74117098 - L1M4 LINE L1 -3594 2552 2257 1022 280 77 56 chr6 108298238 108298839 -74116403 + L2 LINE L2 2706 3313 0 24 77 0 0 chr6 108298839 108298891 -74116351 + AT_rich Low_complexity Low_complexity 1 52 0 2337 79 0 7 chr6 108299150 108299454 -74115788 + AluY SINE Alu 1 302 -9 1975 206 68 3 chr6 108300680 108301133 -74114109 + L1MC4a LINE L1 6079 6242 0 355 297 97 17 chr6 108301396 108301571 -74113671 - MIR SINE MIR -54 208 20 357 82 0 0 chr6 108301650 108301699 -74113543 + (CA)n Simple_repeat Simple_repeat 2 50 0 290 363 60 12 chr6 108301705 108301873 -74113369 + MIR3 SINE MIR 31 206 -2 313 345 85 40 chr6 108302177 108302640 -74112602 + L2 LINE L2 2563 3051 -221 21 82 0 0 chr6 108303493 108303542 -74111700 + AT_rich Low_complexity Low_complexity 1 49 0 192 189 0 27 chr6 108303820 108303857 -74111385 + L2 LINE L2 3219 3254 -18 * 212 244 0 0 chr6 108303824 108303869 -74111373 + MIR SINE MIR 218 262 0 349 260 182 22 chr6 108304197 108304378 -74110864 + L1ME4a LINE L1 5657 5866 -255 345 297 123 30 chr6 108304428 108304664 -74110578 + L1ME LINE L1 5545 5802 -368 506 270 119 5 chr6 108304713 108304898 -74110344 - L1ME3A LINE L1 -3 6167 5962 * 2178 273 98 7 chr6 108304892 108305846 -74109396 - L1M4 LINE L1 -1978 4168 3129 1296 188 70 30 chr6 108305904 108306202 -74109040 - AluJo SINE Alu -2 310 1 860 272 66 16 chr6 108306589 108306832 -74108410 - MIR SINE MIR -6 256 2 25 51 0 0 chr6 108306833 108306872 -74108370 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 108306944 108306966 -74108276 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr6 108307463 108307518 -74107724 + AT_rich Low_complexity Low_complexity 1 55 0 288 284 83 9 chr6 108308985 108309094 -74106148 + MIR SINE MIR 52 168 -94 1023 101 8 57 chr6 108309476 108310005 -74105237 + (TA)n Simple_repeat Simple_repeat 1 503 0 382 278 171 40 chr6 108310012 108310051 -74105191 - L1M4 LINE L1 -874 5272 5239 827 56 28 28 chr6 108310051 108310229 -74105013 + (TA)n Simple_repeat Simple_repeat 1 178 0 2362 55 3 0 chr6 108310230 108310521 -74104721 - AluY SINE Alu -19 292 1 382 278 171 40 chr6 108310521 108310806 -74104436 - L1M4 LINE L1 -906 5240 4903 27 29 0 0 chr6 108310849 108310883 -74104359 + AT_rich Low_complexity Low_complexity 1 34 0 2024 135 3 22 chr6 108311081 108311393 -74103849 + AluSx SINE Alu 1 306 -6 326 229 0 0 chr6 108312970 108313040 -74102202 - MIR SINE MIR -13 249 180 591 197 63 0 chr6 108313174 108313301 -74101941 - MER105 DNA DNA -41 163 29 28 0 0 0 chr6 108314023 108314051 -74101191 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 108314340 108314361 -74100881 + AT_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr6 108314507 108314540 -74100702 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 4044 135 37 92 chr6 108314584 108315445 -74099797 - L1PB4 LINE L1 -23 6133 5320 687 249 127 9 chr6 108315875 108316104 -74099138 - MIR SINE MIR 0 262 7 1325 135 176 8 chr6 108316488 108316732 -74098510 - AluSg SINE Alu -15 285 1 422 326 75 5 chr6 108316846 108317033 -74098209 + MIR SINE MIR 1 200 -62 2191 95 0 11 chr6 108318441 108318767 -74096475 - AluSx SINE Alu 0 323 1 25 0 0 0 chr6 108318941 108318966 -74096276 + AT_rich Low_complexity Low_complexity 1 25 0 698 309 126 26 chr6 108318967 108319514 -74095728 + L2 LINE L2 1767 2368 -946 1905 318 59 14 chr6 108319916 108320725 -74094517 + ERVL LTR ERVL 4068 4913 -851 274 340 21 21 chr6 108320986 108321130 -74094112 + ERVL LTR ERVL 5187 5330 -324 22 0 0 0 chr6 108321452 108321474 -74093768 + AT_rich Low_complexity Low_complexity 1 22 0 1443 46 0 0 chr6 108322529 108322704 -74092538 + L1PA10 LINE L1 5730 5904 -264 23 86 0 0 chr6 108322746 108322804 -74092438 + AT_rich Low_complexity Low_complexity 1 58 0 6485 84 19 7 chr6 108322819 108323652 -74091590 + L1PA11 LINE L1 5260 6106 -68 2172 132 11 19 chr6 108323652 108324030 -74091212 + THE1C LTR MaLR 1 375 0 6485 84 19 7 chr6 108324030 108324098 -74091144 + L1PA11 LINE L1 6106 6172 -2 44 56 0 0 chr6 108324098 108324170 -74091072 + AT_rich Low_complexity Low_complexity 1 72 0 2036 33 0 0 chr6 108325345 108325588 -74089654 + L1PA4 LINE L1 5912 6154 -1 217 254 14 0 chr6 108325653 108325724 -74089518 + (TA)n Simple_repeat Simple_repeat 2 73 0 429 265 6 99 chr6 108325935 108326116 -74089126 + L1ME LINE L1 5500 5663 -458 29 28 0 0 chr6 108326307 108326343 -74088899 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr6 108326448 108326486 -74088756 + AT_rich Low_complexity Low_complexity 1 38 0 209 33 33 0 chr6 108327603 108327633 -74087609 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr6 108327715 108327739 -74087503 + AT_rich Low_complexity Low_complexity 1 24 0 231 61 0 0 chr6 108329539 108329572 -74085670 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 986 162 8 77 chr6 108329617 108329851 -74085391 + L1MA7 LINE L1 5909 6126 -165 2227 158 33 20 chr6 108329865 108330258 -74084984 + MSTA LTR MaLR 31 428 0 657 150 85 0 chr6 108330258 108330411 -74084831 + L1MA7 LINE L1 6123 6288 -3 21 0 0 0 chr6 108330716 108330737 -74084505 + AT_rich Low_complexity Low_complexity 1 21 0 1861 145 30 0 chr6 108331352 108331648 -74083594 - AluSx SINE Alu -7 305 1 390 270 78 26 chr6 108331910 108332140 -74083102 - L1MC4a LINE L1 -1886 5922 5681 25 51 0 0 chr6 108333048 108333087 -74082155 + AT_rich Low_complexity Low_complexity 1 39 0 3981 194 38 38 chr6 108333522 108334531 -74080711 + L1MA9 LINE L1 4233 5241 -905 3433 181 27 22 chr6 108334531 108335043 -74080199 + Tigger7 DNA MER2_type 1 518 -1969 2222 92 0 35 chr6 108335043 108335360 -74079882 + AluSp SINE Alu 1 306 -7 3433 181 27 22 chr6 108335360 108335483 -74079759 + Tigger7 DNA MER2_type 518 639 -1848 2032 109 0 0 chr6 108335570 108335873 -74079369 - L1MA5A LINE L1 -1 6296 5994 381 151 41 0 chr6 108335877 108335950 -74079292 + Tigger7 DNA MER2_type 2409 2484 -3 4444 146 57 98 chr6 108335951 108336200 -74079042 + L1MA9 LINE L1 5239 5497 -815 823 127 8 15 chr6 108336200 108336334 -74078908 + FLAM_A SINE Alu 1 133 0 4444 146 57 98 chr6 108336334 108336644 -74078598 + L1MA9 LINE L1 5497 5818 -494 230 167 0 61 chr6 108336644 108336710 -74078532 - LTR66 LTR ERVL -171 439 378 4444 146 57 98 chr6 108336710 108337172 -74078070 + L1MA9 LINE L1 5818 6281 -31 14907 132 24 8 chr6 108337566 108339920 -74075322 + Tigger1 DNA MER2_type 26 2418 0 23 0 0 0 chr6 108341159 108341182 -74074060 + AT_rich Low_complexity Low_complexity 1 23 0 2185 110 3 0 chr6 108341292 108341600 -74073642 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr6 108341681 108341704 -74073538 + AT_rich Low_complexity Low_complexity 1 23 0 1867 39 0 0 chr6 108342781 108343013 -74072229 - L1PA4 LINE L1 -624 5530 5299 5088 43 5 0 chr6 108343013 108343634 -74071608 + L1PA4 LINE L1 5528 6155 0 737 226 71 8 chr6 108344481 108344790 -74070452 + MER113 DNA MER1_type? 6 379 -142 1539 172 46 49 chr6 108344934 108345283 -74069959 - MER7A DNA MER2_type 0 346 1 959 241 122 32 chr6 108345670 108346040 -74069202 - L1ME1 LINE L1 -5 6161 5759 330 228 114 47 chr6 108346072 108346265 -74068977 + MLT1L LTR MaLR 38 243 -372 236 324 50 22 chr6 108346371 108346510 -74068732 + MLT1K LTR MaLR 402 544 -44 184 354 112 31 chr6 108346777 108346938 -74068304 - MIR SINE MIR -71 191 18 279 361 92 8 chr6 108347054 108347173 -74068069 + L2 LINE L2 3139 3267 -5 1265 63 0 6 chr6 108347780 108347939 -74067303 - AluY SINE Alu -23 288 131 630 296 21 5 chr6 108349410 108349599 -74065643 - MIR SINE MIR -24 238 47 21 36 0 0 chr6 108351573 108351601 -74063641 + AT_rich Low_complexity Low_complexity 1 28 0 41 21 0 0 chr6 108353121 108353169 -74062073 + AT_rich Low_complexity Low_complexity 1 48 0 2011 110 0 0 chr6 108354817 108355090 -74060152 + AluSg SINE Alu 1 273 -37 25 31 0 0 chr6 108356321 108356353 -74058889 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 108358472 108358493 -74056749 + AT_rich Low_complexity Low_complexity 1 21 0 184 267 58 83 chr6 108359473 108359593 -74055649 - L2 LINE L2 -39 3233 3117 206 195 24 0 chr6 108360353 108360394 -74054848 + L2 LINE L2 3227 3268 -4 241 316 137 35 chr6 108361651 108361836 -74053406 + MIR SINE MIR 23 245 -17 324 0 0 0 chr6 108362783 108362819 -74052423 + (CA)n Simple_repeat Simple_repeat 1 36 0 280 242 247 55 chr6 108364330 108364512 -74050730 + L2 LINE L2 2745 2961 -353 477 197 66 49 chr6 108364525 108364647 -74050595 + MER90 LTR ERV1 490 613 -1 3734 177 43 15 chr6 108364690 108365402 -74049840 + MER44D DNA MER2_type 2 605 0 2037 110 0 55 chr6 108366902 108367229 -74048013 + AluSc SINE Alu 1 309 0 2168 274 27 36 chr6 108367289 108368065 -74047177 - L1ME1 LINE L1 -24 6142 5374 185 319 0 0 chr6 108368076 108368123 -74047119 + MER5A DNA MER1_type 137 183 -6 211 341 61 0 chr6 108368563 108368645 -74046597 + L2 LINE L2 3186 3272 0 295 242 16 0 chr6 108369282 108369344 -74045898 - L2 LINE L2 -527 2787 2725 677 223 34 29 chr6 108369486 108369661 -74045581 + MER58A DNA MER1_type 24 199 -25 489 295 140 32 chr6 108369916 108370316 -74044926 + L1MC4a LINE L1 3510 3952 -2194 311 301 147 31 chr6 108370327 108370613 -74044629 + L1MC4a LINE L1 4016 4334 -1812 51 89 0 0 chr6 108370637 108370772 -74044470 + AT_rich Low_complexity Low_complexity 1 135 0 304 321 164 23 chr6 108370793 108371232 -74044010 + L1MC4a LINE L1 4334 4834 -1312 26 0 0 0 chr6 108371343 108371369 -74043873 + AT_rich Low_complexity Low_complexity 1 26 0 489 283 59 32 chr6 108371555 108371742 -74043500 + L1MC4a LINE L1 5321 5512 -609 1538 174 16 40 chr6 108371750 108372054 -74043188 + MER2 DNA MER2_type 1 297 -48 495 181 69 52 chr6 108372052 108372168 -74043074 + MER2 DNA MER2_type 228 345 0 * 726 337 47 16 chr6 108372173 108372556 -74042686 + L1MC4a LINE L1 5531 5925 -1883 267 310 100 35 chr6 108373528 108373728 -74041514 + L2 LINE L2 3006 3218 -95 269 256 12 35 chr6 108374199 108374285 -74040957 + LTR33A LTR ERVL 440 523 0 185 342 26 13 chr6 108374325 108374401 -74040841 + L2 LINE L2 3190 3266 -6 24 32 0 0 chr6 108374706 108374737 -74040505 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr6 108375716 108375752 -74039490 + AT_rich Low_complexity Low_complexity 1 36 0 194 336 160 23 chr6 108376029 108376091 -74039151 - MIR SINE MIR -10 252 200 2253 90 7 3 chr6 108376091 108376391 -74038851 - AluSx SINE Alu -11 301 1 194 336 160 23 chr6 108376391 108376459 -74038783 - MIR SINE MIR -62 200 104 23 68 0 0 chr6 108376590 108376634 -74038608 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr6 108377457 108377489 -74037753 + AT_rich Low_complexity Low_complexity 1 32 0 273 29 0 0 chr6 108378210 108378244 -74036998 + (CA)n Simple_repeat Simple_repeat 1 34 0 454 271 76 28 chr6 108378870 108379014 -74036228 + MIR SINE MIR 3 153 -109 21 57 0 0 chr6 108379263 108379298 -74035944 + AT_rich Low_complexity Low_complexity 1 35 0 357 206 134 0 chr6 108379499 108379596 -74035646 + MIR SINE MIR 143 252 -10 212 214 0 0 chr6 108380041 108380083 -74035159 + L2 LINE L2 3210 3251 -21 24 0 0 0 chr6 108380103 108380127 -74035115 + AT_rich Low_complexity Low_complexity 1 24 0 487 269 167 5 chr6 108380188 108380374 -74034868 - MER58A DNA MER1_type 0 224 9 284 325 208 0 chr6 108380462 108380582 -74034660 - MER5A DNA MER1_type -1 188 44 649 146 129 18 chr6 108380627 108380798 -74034444 - Charlie1 DNA MER1_type -1 2760 2571 2527 74 0 0 chr6 108382906 108383215 -74032027 + AluSc SINE Alu 1 309 0 192 77 0 0 chr6 108383675 108383701 -74031541 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 206 294 37 28 chr6 108383712 108383821 -74031421 - L2 LINE L2 -43 3270 3161 183 397 99 23 chr6 108383824 108383955 -74031287 - L2 LINE L2 -5 3267 3127 304 236 42 0 chr6 108384036 108384108 -74031134 - L2 LINE L2 0 3313 3239 310 301 44 29 chr6 108384302 108384438 -74030804 + MER5A DNA MER1_type 7 144 -45 307 301 41 24 chr6 108384328 108384451 -74030791 - MER5A DNA MER1_type -22 167 43 * 22 35 0 0 chr6 108385250 108385279 -74029963 + AT_rich Low_complexity Low_complexity 1 29 0 588 196 84 39 chr6 108385795 108385974 -74029268 - MER5A DNA MER1_type -2 187 1 2528 49 0 3 chr6 108386262 108386566 -74028676 - AluY SINE Alu -8 303 1 233 217 0 0 chr6 108386825 108386871 -74028371 + MER105 DNA DNA 5 50 -154 183 42 0 0 chr6 108386907 108386931 -74028311 + (CAG)n Simple_repeat Simple_repeat 1 24 0 548 132 33 0 chr6 108386936 108387027 -74028215 + MER5A DNA MER1_type 96 189 0 300 253 10 50 chr6 108387030 108387129 -74028113 + MER105 DNA DNA 49 143 -61 180 271 83 0 chr6 108387467 108387515 -74027727 + L2 LINE L2 3217 3268 -4 411 209 47 0 chr6 108387615 108387701 -74027541 + MIR SINE MIR 165 254 -8 981 203 58 80 chr6 108387930 108388241 -74027001 - L1MC4a LINE L1 -1892 5916 5613 313 302 24 30 chr6 108388289 108388458 -74026784 - L1MC4a LINE L1 -827 5319 5152 216 0 0 0 chr6 108388471 108388495 -74026747 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 306 0 0 0 chr6 108388494 108388528 -74026714 + (CA)n Simple_repeat Simple_repeat 1 34 0 1300 83 0 0 chr6 108388819 108388988 -74026254 - AluSc SINE Alu -9 300 132 29 0 0 0 chr6 108388992 108389021 -74026221 + AT_rich Low_complexity Low_complexity 1 29 0 367 264 103 19 chr6 108390702 108390857 -74024385 - MIR SINE MIR -1 261 94 1885 145 62 3 chr6 108391513 108391838 -74023404 + MER2 DNA MER2_type 1 344 0 461 301 110 6 chr6 108393271 108393475 -74021767 + MIR SINE MIR 25 245 -17 425 256 17 26 chr6 108393614 108393731 -74021511 - L3 LINE CR1 -297 1280 1165 24 0 0 0 chr6 108393819 108393843 -74021399 + AT_rich Low_complexity Low_complexity 1 24 0 281 299 127 22 chr6 108394171 108394305 -74020937 + MIR3 SINE MIR 30 177 -31 24 0 0 0 chr6 108394365 108394389 -74020853 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 108395314 108395339 -74019903 + AT_rich Low_complexity Low_complexity 1 25 0 1408 168 3 62 chr6 108395654 108395945 -74019297 + AluJo SINE Alu 11 284 -28 1583 218 123 43 chr6 108395986 108396802 -74018440 + L1MC4 LINE L1 6783 7706 -336 279 125 0 0 chr6 108396801 108396849 -74018393 + L1 LINE L1 3707 3754 -2392 * 280 317 54 37 chr6 108397185 108397338 -74017904 + LTR40a LTR ERVL 135 314 -177 332 188 16 0 chr6 108397380 108397444 -74017798 + LTR40a LTR ERVL 454 518 -1 291 261 14 0 chr6 108400376 108400445 -74014797 - L2 LINE L2 0 3272 3203 355 222 0 0 chr6 108400447 108400510 -74014732 + Tigger3(Golem) DNA MER2_type 3 65 -2964 578 107 0 24 chr6 108400514 108400598 -74014644 + Tigger3(Golem) DNA MER2_type 2896 2977 -52 2213 129 8 32 chr6 108400609 108400980 -74014262 + THE1B LTR MaLR 3 364 0 10459 97 59 1 chr6 108400980 108402473 -74012769 + THE1B-int LTR MaLR 1 1580 0 718 93 0 0 chr6 108402473 108402570 -74012672 + THE1B LTR MaLR 1 97 -267 1634 122 15 33 chr6 108402725 108402995 -74012247 + THE1B LTR MaLR 100 364 0 325 137 0 20 chr6 108402997 108403048 -74012194 + Tigger3(Golem) DNA MER2_type 2975 3024 -5 589 328 101 57 chr6 108403297 108404191 -74011051 - L2 LINE L2 -342 2972 2040 24 0 0 0 chr6 108405051 108405075 -74010167 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr6 108405374 108405429 -74009813 + AT_rich Low_complexity Low_complexity 1 55 0 22 94 0 0 chr6 108405970 108406034 -74009208 + AT_rich Low_complexity Low_complexity 1 64 0 205 229 33 16 chr6 108407471 108407532 -74007710 + (CATA)n Simple_repeat Simple_repeat 3 64 0 21 0 0 0 chr6 108408715 108408736 -74006506 + AT_rich Low_complexity Low_complexity 1 21 0 211 224 0 0 chr6 108408991 108409040 -74006202 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 844 334 180 15 chr6 108409191 108409907 -74005335 - L3 LINE CR1 -63 1514 681 1019 184 5 30 chr6 108409977 108410178 -74005064 + MER20 DNA MER1_type 7 202 -17 21 57 0 0 chr6 108410682 108410717 -74004525 + AT_rich Low_complexity Low_complexity 1 35 0 280 331 72 0 chr6 108410878 108411017 -74004225 + MIR SINE MIR 40 188 -74 30 0 0 0 chr6 108412240 108412270 -74002972 + AT_rich Low_complexity Low_complexity 1 30 0 2328 101 0 10 chr6 108412902 108413209 -74002033 + AluSp SINE Alu 1 304 -9 4950 185 78 23 chr6 108413312 108414209 -74001033 + L1MC1 LINE L1 4667 5696 -637 2291 98 0 3 chr6 108414209 108414514 -74000728 - AluY SINE Alu -6 305 2 4950 185 78 23 chr6 108414514 108415189 -74000053 + L1MC1 LINE L1 5696 6333 0 1035 205 5 5 chr6 108415522 108415712 -73999530 + MER58A DNA MER1_type 35 224 0 22 56 0 0 chr6 108415772 108415808 -73999434 + AT_rich Low_complexity Low_complexity 1 36 0 404 285 35 21 chr6 108415906 108416050 -73999192 + MIR SINE MIR 60 205 -57 24 0 0 0 chr6 108416705 108416729 -73998513 + AT_rich Low_complexity Low_complexity 1 24 0 241 163 0 0 chr6 108417614 108417657 -73997585 + L1MA4 LINE L1 6175 6217 -83 21 0 0 0 chr6 108419072 108419093 -73996149 + AT_rich Low_complexity Low_complexity 1 21 0 1354 181 82 31 chr6 108419977 108420269 -73994973 + AluJo SINE Alu 5 311 -1 301 167 65 22 chr6 108422323 108422461 -73992781 + (TA)n Simple_repeat Simple_repeat 1 144 0 45 34 0 0 chr6 108422478 108422537 -73992705 + AT_rich Low_complexity Low_complexity 1 59 0 2774 192 0 4 chr6 108423339 108423895 -73991347 - L1P LINE L1 -984 5162 4609 574 56 11 34 chr6 108423895 108423984 -73991258 + L1PA16 LINE L1 6080 6166 0 419 266 70 39 chr6 108424039 108424167 -73991075 + L2 LINE L2 3182 3313 0 326 256 37 59 chr6 108424342 108424560 -73990682 - L1MC4a LINE L1 -302 5819 5630 22 0 0 0 chr6 108424741 108424763 -73990479 + AT_rich Low_complexity Low_complexity 1 22 0 554 129 16 16 chr6 108425376 108425500 -73989742 + (TA)n Simple_repeat Simple_repeat 1 124 0 195 69 0 0 chr6 108425656 108425685 -73989557 + (A)n Simple_repeat Simple_repeat 1 29 0 298 341 159 45 chr6 108426414 108426704 -73988538 - L2 LINE L2 -2068 1246 924 931 147 7 0 chr6 108427996 108428132 -73987110 - MER46A DNA MER2_type -99 137 1 288 0 0 0 chr6 108429165 108429197 -73986045 + (CAA)n Simple_repeat Simple_repeat 2 33 0 268 246 119 40 chr6 108429321 108429447 -73985795 + L1ME2 LINE L1 5965 6100 -64 28 61 0 0 chr6 108429693 108429742 -73985500 + AT_rich Low_complexity Low_complexity 1 49 0 209 264 0 0 chr6 108429746 108429799 -73985443 + GA-rich Low_complexity Low_complexity 2 54 0 1337 256 9 45 chr6 108429802 108430228 -73985014 + L1ME3A LINE L1 5441 5851 -319 413 326 68 42 chr6 108430376 108430612 -73984630 + L3 LINE CR1 285 526 -1051 228 288 0 0 chr6 108430724 108430783 -73984459 + GA-rich Low_complexity Low_complexity 2 60 0 262 205 39 26 chr6 108431455 108431533 -73983709 - HsTC2 DNA Tc2 0 1898 1820 1474 201 29 0 chr6 108431538 108431847 -73983395 + AluJo SINE Alu 1 317 0 2242 100 7 0 chr6 108433395 108433704 -73981538 + AluSq SINE Alu 1 311 -2 1509 175 107 38 chr6 108434811 108435177 -73980065 + MSTB1 LTR MaLR 40 430 -2 716 257 68 14 chr6 108435942 108436164 -73979078 + MIR SINE MIR 29 262 0 304 298 85 7 chr6 108437081 108437222 -73978020 + L1MC/D LINE L1 5547 5698 -2110 259 319 44 26 chr6 108437504 108437617 -73977625 + L2 LINE L2 3142 3256 -16 1887 83 16 0 chr6 108437778 108438030 -73977212 + AluSq SINE Alu 40 295 -18 1888 132 7 14 chr6 108438382 108438677 -73976565 + AluSx SINE Alu 1 293 -19 6185 94 16 6 chr6 108438750 108440287 -73974955 - L1PA11 LINE L1 -16 7596 6040 16203 214 27 17 chr6 108440288 108444899 -73970343 - L1PA11 LINE L1 -1825 5759 11 236 308 26 34 chr6 108445299 108445416 -73969826 + MIR SINE MIR 118 233 -29 25 0 0 0 chr6 108445742 108445767 -73969475 + AT_rich Low_complexity Low_complexity 1 25 0 2205 100 7 0 chr6 108446562 108446852 -73968390 + AluSg SINE Alu 1 292 -18 1120 135 0 38 chr6 108446852 108447037 -73968205 + AluSg/x SINE Alu 132 309 0 629 241 89 16 chr6 108447123 108447314 -73967928 + MER3 DNA MER1_type 3 207 -2 22 0 0 0 chr6 108447486 108447508 -73967734 + AT_rich Low_complexity Low_complexity 1 22 0 583 307 88 8 chr6 108447549 108447787 -73967455 - MIR SINE MIR -4 258 2 21 0 0 0 chr6 108447943 108447964 -73967278 + AT_rich Low_complexity Low_complexity 1 21 0 881 238 60 0 chr6 108448193 108448451 -73966791 + L1ME4a LINE L1 4622 4893 -1253 2405 233 56 30 chr6 108448451 108449258 -73965984 + L1ME4a LINE L1 5172 5999 -167 529 164 45 0 chr6 108449262 108449372 -73965870 + L1MA10 LINE L1 6210 6324 -10 25 65 0 0 chr6 108450175 108450221 -73965021 + AT_rich Low_complexity Low_complexity 1 46 0 248 197 30 0 chr6 108450926 108450992 -73964250 + L1ME4a LINE L1 6052 6119 -2 46 74 0 0 chr6 108451355 108451450 -73963792 + AT_rich Low_complexity Low_complexity 1 95 0 327 211 0 0 chr6 108453134 108453191 -73962051 + MER46C DNA MER2_type 167 223 -115 347 224 0 0 chr6 108453223 108453290 -73961952 + Tigger6 DNA MER2_type 1530 1596 -1 843 212 0 50 chr6 108455011 108455190 -73960052 - FAM SINE Alu -5 170 1 1913 107 90 90 chr6 108455854 108456221 -73959021 - L1MA2 LINE L1 0 6304 5935 2462 132 3 3 chr6 108456221 108456584 -73958658 + THE1B LTR MaLR 1 363 -1 1913 107 90 90 chr6 108456584 108456638 -73958604 - L1MA2 LINE L1 -368 5936 5883 731 179 8 8 chr6 108456881 108457015 -73958227 - AluJb SINE Alu -12 300 167 183 42 0 0 chr6 108457152 108457176 -73958066 + (CA)n Simple_repeat Simple_repeat 2 25 0 249 33 0 0 chr6 108457859 108457889 -73957353 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 617 290 97 67 chr6 108458210 108458416 -73956826 + L1M4 LINE L1 4585 4783 -1363 201 39 0 0 chr6 108458416 108458442 -73956800 + (CA)n Simple_repeat Simple_repeat 2 27 0 617 290 97 67 chr6 108458442 108458791 -73956451 + L1M4 LINE L1 4783 5157 -989 915 244 106 25 chr6 108458811 108459168 -73956074 + L1ME1 LINE L1 34 419 -6121 686 209 35 12 chr6 108459234 108459406 -73955836 + L1ME1 LINE L1 1002 1177 -5363 9652 100 49 11 chr6 108459428 108461699 -73953543 - L1PA8A LINE L1 -13 6118 3754 2453 207 58 45 chr6 108461698 108462381 -73952861 + L1ME1 LINE L1 1165 1861 -4679 * 1536 216 10 0 chr6 108462381 108462682 -73952560 + AluJb SINE Alu 1 304 -8 2453 207 58 45 chr6 108462682 108462767 -73952475 + L1ME1 LINE L1 1861 1943 -4597 1684 221 65 30 chr6 108464629 108465121 -73950121 + LTR22 LTR ERVK 1 509 0 270 330 125 0 chr6 108465134 108465246 -73949996 + MIR SINE MIR 107 232 -30 372 235 20 10 chr6 108465744 108465846 -73949396 - Charlie1 DNA MER1_type -1 2760 2658 253 170 0 0 chr6 108465853 108465900 -73949342 - Alu SINE Alu -3 305 259 554 151 7 122 chr6 108465901 108466040 -73949202 - MLT1A2 LTR MaLR -248 126 4 1514 177 46 31 chr6 108466042 108466392 -73948850 + MLT1C LTR MaLR 68 422 -45 3401 102 112 9 chr6 108466392 108466939 -73948303 + MER4B LTR ERV1 1 603 -7 273 250 0 0 chr6 108466938 108466994 -73948248 + MLT1C LTR MaLR 412 467 0 * 2278 64 6 29 chr6 108468773 108469087 -73946155 - AluY SINE Alu -4 307 1 460 232 18 27 chr6 108469400 108469512 -73945730 - MIR SINE MIR -64 198 88 3756 256 91 47 chr6 108469585 108470291 -73944951 + L1ME1 LINE L1 2712 3386 -3174 2020 163 54 3 chr6 108470291 108470678 -73944564 + L1MA6 LINE L1 5894 6300 0 3756 256 91 47 chr6 108470678 108473036 -73942206 + L1ME1 LINE L1 3386 5990 -570 1736 154 6 13 chr6 108473036 108473348 -73941894 - AluY SINE Alu -1 310 1 3756 256 91 47 chr6 108473348 108473618 -73941624 + L1ME1 LINE L1 5990 6247 -313 278 328 61 8 chr6 108473801 108473932 -73941310 + MIR SINE MIR 1 138 -124 202 231 77 0 chr6 108473945 108473997 -73941245 + MIR SINE MIR 83 138 -124 505 288 195 0 chr6 108474061 108474266 -73940976 - MIR SINE MIR -3 259 15 198 247 34 56 chr6 108474446 108474535 -73940707 + L2 LINE L2 2679 2765 -549 284 267 30 40 chr6 108474767 108474868 -73940374 + L2 LINE L2 3208 3307 -6 741 162 0 0 chr6 108475269 108475386 -73939856 - AluJo SINE Alu -25 287 171 767 207 0 47 chr6 108475441 108475470 -73939772 - AluJo SINE Alu -151 161 132 2055 126 0 0 chr6 108475470 108475763 -73939479 - AluY SINE Alu -18 293 1 767 207 0 47 chr6 108475763 108475902 -73939340 - AluJo SINE Alu -180 132 1 203 301 0 97 chr6 108476165 108476278 -73938964 - L2 LINE L2 -1 3271 3170 413 222 0 40 chr6 108476496 108476595 -73938647 - MIR SINE MIR -132 130 36 22 35 0 0 chr6 108477174 108477203 -73938039 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 108477815 108477846 -73937396 + AT_rich Low_complexity Low_complexity 1 31 0 1082 309 148 29 chr6 108478450 108479396 -73935846 - L2 LINE L2 0 3313 2252 330 270 73 0 chr6 108480222 108480359 -73934883 + L1ME4a LINE L1 5756 5902 -219 656 214 0 0 chr6 108480359 108480490 -73934752 - FLAM_A SINE Alu -2 131 1 21 36 0 0 chr6 108481081 108481109 -73934133 + AT_rich Low_complexity Low_complexity 1 28 0 520 225 62 5 chr6 108481121 108481383 -73933859 - MER33 DNA MER1_type 0 324 1 792 247 6 0 chr6 108481557 108481719 -73933523 + FRAM SINE Alu 1 163 -3 219 404 73 0 chr6 108482081 108482190 -73933052 + L2 LINE L2 3140 3256 -16 21 71 0 0 chr6 108482355 108482397 -73932845 + AT_rich Low_complexity Low_complexity 1 42 0 2016 94 0 24 chr6 108482475 108482786 -73932456 - AluSc SINE Alu 0 304 1 21 0 0 0 chr6 108483027 108483048 -73932194 + AT_rich Low_complexity Low_complexity 1 21 0 662 261 97 4 chr6 108483273 108483511 -73931731 - MER112 DNA MER1_type 0 260 1 985 249 88 16 chr6 108483627 108483992 -73931250 + L1MC4a LINE L1 5618 6008 -1800 244 259 38 76 chr6 108484223 108484381 -73930861 - L3 LINE CR1 -234 1343 1192 735 332 13 0 chr6 108484925 108485154 -73930088 - MIR SINE MIR -2 260 29 299 289 41 62 chr6 108485444 108485638 -73929604 + L1ME LINE L1 5599 5788 -333 1720 158 0 38 chr6 108486518 108486810 -73928432 - AluJo SINE Alu -31 281 1 832 152 60 60 chr6 108488114 108488298 -73926944 + MLT1E LTR MaLR 2 185 -408 752 252 96 18 chr6 108488333 108488666 -73926576 + L1ME1 LINE L1 4325 4683 -1463 2685 220 64 67 chr6 108488673 108490125 -73925117 + L1ME1 LINE L1 4725 6159 -7 227 149 0 21 chr6 108490189 108490236 -73925006 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 180 375 33 25 chr6 108491420 108491540 -73923702 + L2 LINE L2 3142 3262 -10 26 0 0 0 chr6 108492149 108492175 -73923067 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr6 108492185 108492222 -73923020 + AT_rich Low_complexity Low_complexity 1 37 0 325 313 123 19 chr6 108493000 108493211 -73922031 + MLT1L LTR MaLR 381 613 -2 297 267 36 0 chr6 108494828 108494945 -73920297 - MIR SINE MIR -147 115 15 330 337 139 36 chr6 108495005 108495423 -73919819 + L2 LINE L2 2397 2857 -457 230 295 92 95 chr6 108496027 108496322 -73918920 + MLT1K LTR MaLR 14 307 -281 304 291 47 29 chr6 108496506 108496678 -73918564 + MLT1K LTR MaLR 411 585 -3 1255 179 21 45 chr6 108497158 108497509 -73917733 + L1MC/D LINE L1 5400 5713 -529 1336 226 31 55 chr6 108497512 108497893 -73917349 + MLT1B LTR MaLR 1 372 -18 189 0 0 0 chr6 108497955 108497976 -73917266 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 455 141 13 26 chr6 108497996 108498074 -73917168 + MLT1D LTR MaLR 1 77 -428 2267 93 0 37 chr6 108498267 108498590 -73916652 + AluSp SINE Alu 3 313 0 28 48 0 0 chr6 108498591 108498633 -73916609 + AT_rich Low_complexity Low_complexity 1 42 0 286 312 70 83 chr6 108498703 108498860 -73916382 - MER5B DNA MER1_type -3 175 21 260 243 72 18 chr6 108499298 108499409 -73915833 + L1MC4 LINE L1 7926 8042 0 36 62 0 0 chr6 108501885 108501949 -73913293 + AT_rich Low_complexity Low_complexity 1 64 0 247 282 73 55 chr6 108502388 108502498 -73912744 - L2 LINE L2 -10 3262 3151 1472 145 41 0 chr6 108503412 108503654 -73911588 + MSTA LTR MaLR 177 428 0 1416 207 10 37 chr6 108503815 108504115 -73911127 + AluJb SINE Alu 1 292 -20 1725 162 38 27 chr6 108504307 108504678 -73910564 + THE1C LTR MaLR 1 375 0 427 234 181 32 chr6 108505210 108505458 -73909784 + L1MC4 LINE L1 7758 8042 0 337 109 0 0 chr6 108505525 108505571 -73909671 - L1PA16 LINE L1 -969 5177 5132 * 3506 128 44 0 chr6 108505567 108506189 -73909053 + L1PA16 LINE L1 5186 5836 -330 1856 165 29 0 chr6 108506296 108506612 -73908630 + L1PA16 LINE L1 5827 6151 -15 21 57 0 0 chr6 108507178 108507213 -73908029 + AT_rich Low_complexity Low_complexity 1 35 0 323 280 69 51 chr6 108507949 108508124 -73907118 - MIR SINE MIR -14 248 71 5280 199 45 27 chr6 108508535 108509812 -73905430 + Charlie1a DNA MER1_type 11 1311 -144 3905 144 47 29 chr6 108509817 108510555 -73904687 - Tigger3(Golem) DNA MER2_type -1 3028 2277 624 181 29 0 chr6 108510545 108510650 -73904592 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 688 199 14 7 chr6 108510650 108510791 -73904451 + Charlie1a DNA MER1_type 1314 1455 0 218 374 20 27 chr6 108511291 108511438 -73903804 + L2 LINE L2 2911 3056 -216 26 30 0 0 chr6 108512323 108512356 -73902886 + AT_rich Low_complexity Low_complexity 1 33 0 305 202 35 192 chr6 108512588 108512791 -73902451 + L1MC/D LINE L1 5315 5485 -2323 1941 244 66 80 chr6 108512896 108513745 -73901497 + L1MB8 LINE L1 890 1729 -5126 1769 171 0 0 chr6 108513745 108514031 -73901211 + AluJo SINE Alu 1 286 -26 1941 244 66 80 chr6 108514031 108514269 -73900973 + L1MB8 LINE L1 1729 1969 -4886 1920 142 7 10 chr6 108514271 108514581 -73900661 + AluSp SINE Alu 1 309 -4 326 324 0 0 chr6 108514586 108514691 -73900551 + L1MB8 LINE L1 2406 2510 -4628 189 121 0 0 chr6 108514719 108514752 -73900490 + (TG)n Simple_repeat Simple_repeat 2 34 0 266 271 10 0 chr6 108514818 108514914 -73900328 + L1MB8 LINE L1 3324 3420 -3537 6665 171 16 7 chr6 108514918 108516156 -73899086 - L1PA13 LINE L1 -1870 4276 3028 5876 112 14 2 chr6 108516158 108518016 -73897226 + L1PA13 LINE L1 4283 6158 -5 22 35 0 0 chr6 108518016 108518045 -73897197 + AT_rich Low_complexity Low_complexity 1 29 0 5031 221 97 24 chr6 108518045 108519384 -73895858 + L1MB8 LINE L1 3407 4648 -2309 1973 139 10 16 chr6 108519384 108519694 -73895548 + AluSg SINE Alu 1 308 -2 5031 221 97 24 chr6 108519694 108520014 -73895228 + L1MB8 LINE L1 4648 5192 -1765 3173 47 7 2 chr6 108520014 108520419 -73894823 + L1PA6 LINE L1 5743 6149 -5 5031 221 97 24 chr6 108520419 108520445 -73894797 + L1MB8 LINE L1 5192 5215 -1742 1972 172 35 43 chr6 108520448 108520998 -73894244 - MLT2A2 LTR ERVL 0 554 5 3198 211 69 24 chr6 108521018 108522129 -73893113 + L1MB8 LINE L1 5233 6293 -696 1520 197 49 0 chr6 108522129 108522413 -73892829 - AluJo SINE Alu -14 298 1 3198 211 69 24 chr6 108522413 108522641 -73892601 + L1MB8 LINE L1 6293 6509 -480 2178 127 0 0 chr6 108522641 108522948 -73892294 + AluSg SINE Alu 1 307 -3 3198 211 69 24 chr6 108522948 108523293 -73891949 + L1MB8 LINE L1 6509 6982 -7 1986 147 3 0 chr6 108523353 108523652 -73891590 + AluJb SINE Alu 2 301 -11 270 32 0 0 chr6 108525601 108525632 -73889610 + U2 snRNA snRNA 1 31 -157 542 317 110 74 chr6 108525662 108526242 -73889000 + L3 LINE CR1 563 1163 -414 981 112 0 21 chr6 108526260 108526403 -73888839 - MER30 DNA MER1_type 0 230 91 2941 115 2 0 chr6 108526573 108527016 -73888226 - L1P LINE L1 -4369 1777 1334 553 335 118 55 chr6 108527016 108527232 -73888010 - L3 LINE CR1 -493 1084 883 2219 91 7 3 chr6 108527232 108527528 -73887714 - AluSg SINE Alu -13 297 1 553 335 118 55 chr6 108527528 108527744 -73887498 - L3 LINE CR1 -694 883 625 864 217 11 0 chr6 108527971 108528151 -73887091 - MER3 DNA MER1_type -9 200 19 2181 165 13 45 chr6 108528267 108528715 -73886527 - L1MC2 LINE L1 -194 6150 5717 530 140 21 54 chr6 108529446 108529539 -73885703 - MER44D DNA MER2_type -1 604 515 3327 121 173 105 chr6 108529542 108530849 -73884393 - pTR5 LTR ERV1 0 2438 747 1996 155 106 24 chr6 108530849 108531275 -73883967 - MER44D DNA MER2_type -87 518 3 455 211 35 26 chr6 108531629 108531743 -73883499 + LTR40b LTR ERVL 244 358 -104 26 50 0 0 chr6 108532243 108532283 -73882959 + AT_rich Low_complexity Low_complexity 1 40 0 285 228 62 71 chr6 108533072 108533283 -73881959 + L1MEd LINE L1 1008 1216 -4903 333 264 68 64 chr6 108533315 108533611 -73881631 + L1MEd LINE L1 1355 1651 -4478 216 209 0 55 chr6 108534063 108534115 -73881127 + A-rich Low_complexity Low_complexity 2 48 -39 2922 164 44 24 chr6 108534115 108534729 -73880513 + L1MC2 LINE L1 5710 6335 -9 216 209 0 55 chr6 108534729 108534767 -73880475 + A-rich Low_complexity Low_complexity 48 87 0 1663 132 48 0 chr6 108534903 108535153 -73880089 + AluSx SINE Alu 11 272 -40 498 320 130 18 chr6 108535616 108536054 -73879188 + L1MEd LINE L1 3141 3627 -2502 9265 171 33 9 chr6 108536288 108538082 -73877160 - L1MA6 LINE L1 -908 5238 3403 6152 126 22 19 chr6 108538085 108539128 -73876114 + L1MA6 LINE L1 5255 6300 0 241 260 0 0 chr6 108539930 108539980 -73875262 + (TATG)n Simple_repeat Simple_repeat 3 52 0 497 342 166 3 chr6 108540643 108540962 -73874280 - L3 LINE CR1 -17 1560 1190 903 163 47 0 chr6 108541429 108541601 -73873641 - AluJb SINE Alu -13 299 120 298 312 179 33 chr6 108542345 108542767 -73872475 + L3 LINE CR1 35 594 -983 1799 185 48 75 chr6 108543413 108543786 -73871456 + Charlie1b DNA MER1_type 2 358 -2403 1627 201 0 19 chr6 108543786 108544104 -73871138 + AluJo SINE Alu 1 312 0 1799 185 48 75 chr6 108544104 108544266 -73870976 + Charlie1b DNA MER1_type 358 523 0 306 273 188 36 chr6 108545020 108545185 -73870057 - MIR SINE MIR -18 244 55 192 256 134 49 chr6 108545300 108545382 -73869860 + MIR SINE MIR 58 146 -62 21 0 0 0 chr6 108546545 108546566 -73868676 + AT_rich Low_complexity Low_complexity 1 21 0 322 255 122 31 chr6 108546645 108546743 -73868499 + MIR SINE MIR 156 262 0 340 319 43 22 chr6 108547971 108548109 -73867133 + L2 LINE L2 3168 3308 -5 346 284 127 46 chr6 108548713 108548910 -73866332 - MIR SINE MIR -44 218 6 1647 179 28 3 chr6 108549926 108550216 -73865026 + AluJb SINE Alu 3 299 -13 2155 109 7 3 chr6 108550923 108551226 -73864016 + AluSx SINE Alu 9 312 0 23 0 0 0 chr6 108552122 108552145 -73863097 + AT_rich Low_complexity Low_complexity 1 23 0 202 275 72 0 chr6 108552188 108552257 -73862985 - MIR SINE MIR -114 148 75 23 0 0 0 chr6 108552373 108552396 -73862846 + AT_rich Low_complexity Low_complexity 1 23 0 242 217 84 12 chr6 108552427 108552510 -73862732 + L1MC/D LINE L1 5703 5791 -2017 23 0 0 0 chr6 108554273 108554296 -73860946 + AT_rich Low_complexity Low_complexity 1 23 0 435 52 0 0 chr6 108554518 108554576 -73860666 - Alu SINE Alu -11 300 243 1774 155 11 3 chr6 108554576 108554860 -73860382 - AluSx SINE Alu -26 286 1 2086 131 0 10 chr6 108556208 108556514 -73858728 - AluJb SINE Alu -9 303 1 328 255 177 0 chr6 108556901 108557042 -73858200 - MIR SINE MIR -48 214 49 1946 273 126 17 chr6 108557581 108558958 -73856284 - L1ME3A LINE L1 -7 6163 4479 324 70 0 0 chr6 108558958 108559001 -73856241 + (CA)n Simple_repeat Simple_repeat 1 43 0 1946 273 126 17 chr6 108559001 108559672 -73855570 - L1ME3A LINE L1 -1691 4479 3883 531 260 115 34 chr6 108559764 108560060 -73855182 - L1MC4 LINE L1 -138 7904 7585 270 291 31 8 chr6 108560075 108560202 -73855040 - L1ME3A LINE L1 -2599 3547 3418 30 69 0 0 chr6 108561410 108561468 -73853774 + AT_rich Low_complexity Low_complexity 1 58 0 296 305 12 0 chr6 108562342 108562424 -73852818 + MIR3 SINE MIR 101 183 -25 689 341 139 20 chr6 108563710 108564164 -73851078 - L2 LINE L2 -1 3312 2805 1819 157 0 26 chr6 108564715 108565020 -73850222 - AluJb SINE Alu -15 297 1 183 80 0 0 chr6 108565130 108565155 -73850087 + (A)n Simple_repeat Simple_repeat 1 25 0 665 121 10 0 chr6 108565858 108565957 -73849285 - MLT1B LTR MaLR -40 350 251 350 266 0 39 chr6 108566206 108566334 -73848908 + L1MC5 LINE L1 7784 7906 -55 2125 106 0 0 chr6 108567048 108567367 -73847875 - AluSx SINE Alu 0 319 1 1556 180 59 57 chr6 108567583 108567971 -73847271 + MLT1B LTR MaLR 2 390 0 754 297 97 21 chr6 108569508 108569848 -73845394 + L2 LINE L2 2948 3313 0 832 191 27 37 chr6 108570173 108570361 -73844881 + MER20 DNA MER1_type 8 193 -26 22 56 0 0 chr6 108570540 108570576 -73844666 + AT_rich Low_complexity Low_complexity 1 36 0 345 225 117 17 chr6 108570593 108570713 -73844529 + L1MEd LINE L1 904 1035 -5084 305 261 116 68 chr6 108570771 108571273 -73843969 + L1MEd LINE L1 2114 2639 -3490 855 113 0 0 chr6 108571352 108571476 -73843766 + AluSg/x SINE Alu 172 295 -15 227 238 0 0 chr6 108571741 108571783 -73843459 - L2 LINE L2 -565 2749 2708 451 257 39 121 chr6 108571964 108572170 -73843072 - MER5A DNA MER1_type 0 189 1 2286 105 0 0 chr6 108572186 108572491 -73842751 - AluSg SINE Alu -5 305 1 1504 152 27 11 chr6 108572584 108572847 -73842395 + AluJb SINE Alu 1 267 -45 289 121 154 121 chr6 108572886 108572977 -73842265 - MER105 DNA DNA -1 203 110 717 241 27 0 chr6 108573578 108573765 -73841477 + L1PBa LINE L1 6 197 -6666 * 7584 122 38 5 chr6 108573762 108575021 -73840221 + L1PBa LINE L1 1392 2692 -4171 227 237 68 0 chr6 108575181 108575240 -73840002 - L2 LINE L2 -2 3270 3208 2476 70 0 0 chr6 108575283 108575584 -73839658 + AluSc SINE Alu 1 301 -8 335 286 14 71 chr6 108575682 108575822 -73839420 - L2 LINE L2 0 3313 3182 290 325 214 23 chr6 108576139 108576573 -73838669 - L2 LINE L2 -599 2715 2199 21 71 0 0 chr6 108577805 108577847 -73837395 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 108579569 108579590 -73835652 + AT_rich Low_complexity Low_complexity 1 21 0 4082 162 41 40 chr6 108579841 108580614 -73834628 - MER21B LTR ERV1 -1 862 89 413 125 0 0 chr6 108580622 108580686 -73834556 + AluJ/FLAM SINE Alu 21 84 -228 22 0 0 0 chr6 108580757 108580779 -73834463 + AT_rich Low_complexity Low_complexity 1 22 0 278 313 111 20 chr6 108581059 108581158 -73834084 + L2 LINE L2 3147 3254 -18 449 313 182 30 chr6 108583202 108583675 -73831567 + L3 LINE CR1 1020 1564 -13 199 250 20 90 chr6 108583688 108583788 -73831454 - L2 LINE L2 -93 3220 3128 1211 188 106 0 chr6 108583881 108584174 -73831068 + MER33 DNA MER1_type 1 324 0 1680 176 17 35 chr6 108584189 108584535 -73830707 - MER2 DNA MER2_type 0 344 5 907 213 6 0 chr6 108584598 108584767 -73830475 - FAM SINE Alu -5 170 1 1573 196 0 20 chr6 108585123 108585429 -73829813 + AluJo SINE Alu 1 300 -12 1694 160 10 52 chr6 108585459 108585765 -73829477 + AluJb SINE Alu 1 293 -19 303 344 39 33 chr6 108586031 108586211 -73829031 - MLT1L LTR MaLR -76 539 359 249 287 35 23 chr6 108586545 108586632 -73828610 + MLT1L LTR MaLR 3 90 -525 330 26 0 0 chr6 108587499 108587538 -73827704 + (TA)n Simple_repeat Simple_repeat 2 40 0 864 319 140 24 chr6 108587538 108588515 -73826727 + HAL1 LINE L1 832 1922 -585 2438 114 8 3 chr6 108588571 108588948 -73826294 + L1PB1 LINE L1 5772 6150 -1 24 53 0 0 chr6 108588942 108588980 -73826262 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 108589811 108589832 -73825410 + AT_rich Low_complexity Low_complexity 1 21 0 195 139 0 0 chr6 108590562 108590598 -73824644 + (CTG)n Simple_repeat Simple_repeat 2 37 0 491 355 29 0 chr6 108592173 108592345 -73822897 - MLT1J LTR MaLR -316 195 19 28 0 0 0 chr6 108592538 108592566 -73822676 + AT_rich Low_complexity Low_complexity 1 28 0 180 324 20 88 chr6 108592613 108592761 -73822481 - L2 LINE L2 -1 3271 3134 311 204 34 57 chr6 108593074 108593162 -73822080 + L2 LINE L2 3222 3307 -6 1223 165 56 5 chr6 108593299 108593587 -73821655 + MER61C LTR ERV1 1 395 -39 307 244 44 22 chr6 108593605 108593695 -73821547 + MER61B-int LTR ERV1 1 92 -5125 267 31 0 0 chr6 108593742 108593774 -73821468 + (TCCCC)n Simple_repeat Simple_repeat 4 35 0 1739 154 36 75 chr6 108594038 108594454 -73820788 + MER61B-int LTR ERV1 356 755 -4462 1894 27 0 0 chr6 108594454 108594678 -73820564 - L1PA2 LINE L1 -249 5906 5683 2130 20 0 0 chr6 108594678 108594919 -73820323 + L1PA2 LINE L1 5909 6155 0 619 177 0 0 chr6 108594957 108595070 -73820172 + MER61B-int LTR ERV1 743 855 -4362 * 27287 99 37 25 chr6 108595055 108595244 -73819998 + MER61B-int LTR ERV1 958 1143 -4074 1833 117 0 0 chr6 108595244 108595514 -73819728 - AluSg SINE Alu 0 309 40 27287 99 37 25 chr6 108595514 108595982 -73819260 + MER61B-int LTR ERV1 1143 1604 -3613 2110 127 3 10 chr6 108595982 108596282 -73818960 + AluSp SINE Alu 1 298 -15 27287 99 37 25 chr6 108596282 108597749 -73817493 + MER61B-int LTR ERV1 1604 3052 -2165 2124 117 21 0 chr6 108597749 108598040 -73817202 - AluSx SINE Alu -15 297 1 27287 99 37 25 chr6 108598040 108599150 -73816092 + MER61B-int LTR ERV1 3052 4260 -957 2578 59 0 0 chr6 108599150 108599453 -73815789 + AluY SINE Alu 1 303 -8 27287 99 37 25 chr6 108599453 108600423 -73814819 + MER61B-int LTR ERV1 4260 5217 0 1279 189 51 15 chr6 108600423 108600729 -73814513 + MER61B LTR ERV1 1 396 -28 557 181 6 110 chr6 108600739 108600921 -73814321 - L1ME3 LINE L1 -90 6072 5910 1102 267 58 34 chr6 108601330 108601746 -73813496 - MER77 LTR ERV1 -8 597 172 266 205 134 18 chr6 108601755 108601867 -73813375 - MER77 LTR ERV1 -363 242 118 223 208 21 0 chr6 108602865 108602913 -73812329 - L2 LINE L2 0 3313 3265 1904 146 0 4 chr6 108604630 108604936 -73810306 - AluSx SINE Alu 0 307 3 2501 184 25 61 chr6 108605223 108605759 -73809483 + MLT2B3 LTR ERVL 1 518 -36 334 83 17 17 chr6 108605759 108605819 -73809423 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 2501 184 25 61 chr6 108605819 108605841 -73809401 + MLT2B3 LTR ERVL 518 539 -15 282 125 0 0 chr6 108605886 108605926 -73809316 + LTR56 LTR ERV1 349 388 -57 24 32 0 0 chr6 108605926 108605957 -73809285 + AT_rich Low_complexity Low_complexity 1 31 0 204 40 0 0 chr6 108606182 108606207 -73809035 + (T)n Simple_repeat Simple_repeat 1 25 0 712 164 66 0 chr6 108606214 108606336 -73808906 - FLAM_C SINE Alu -3 130 1 296 284 172 37 chr6 108607029 108607163 -73808079 - MER5A DNA MER1_type -3 186 35 183 156 0 0 chr6 108607313 108607345 -73807897 + T-rich Low_complexity Low_complexity 1 32 0 826 279 80 29 chr6 108607452 108607901 -73807341 - MLT1C LTR MaLR 0 467 1 214 246 43 29 chr6 108607931 108608000 -73807242 - MIR SINE MIR 0 262 193 4396 74 5 3 chr6 108608222 108608804 -73806438 + L1PA7 LINE L1 5566 6148 -6 621 237 0 0 chr6 108608814 108608932 -73806310 + FLAM_A SINE Alu 1 118 -15 374 323 174 12 chr6 108609050 108609217 -73806025 - MIR SINE MIR -56 206 13 38036 81 9 7 chr6 108609223 108615362 -73799880 - L1PA4 LINE L1 -1 6154 12 408 228 122 8 chr6 108615579 108615702 -73799540 + LTR16A1 LTR ERVL 274 410 -47 431 77 0 15 chr6 108615875 108615940 -73799302 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 428 274 57 0 chr6 108615983 108616107 -73799135 + L2 LINE L2 2196 2326 -988 256 203 122 0 chr6 108616125 108616199 -73799043 - MLT1J2 LTR MaLR -28 422 340 245 259 74 25 chr6 108616224 108616305 -73798937 - MLT1I LTR MaLR -269 140 56 216 212 127 110 chr6 108616417 108616535 -73798707 + L2 LINE L2 2403 2522 -792 735 263 73 53 chr6 108616536 108616894 -73798348 + L1MC4 LINE L1 7556 7920 -122 233 157 48 20 chr6 108616896 108617043 -73798199 + (TA)n Simple_repeat Simple_repeat 1 151 0 910 237 67 25 chr6 108617196 108617479 -73797763 + L2 LINE L2 2640 2934 -380 22 35 0 0 chr6 108618643 108618672 -73796570 + AT_rich Low_complexity Low_complexity 1 29 0 31 76 0 0 chr6 108618986 108619052 -73796190 + AT_rich Low_complexity Low_complexity 1 66 0 28 29 0 0 chr6 108619144 108619179 -73796063 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr6 108619593 108619616 -73795626 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1857 176 7 3 chr6 108620225 108620526 -73794716 - AluJo SINE Alu -10 302 1 370 267 127 0 chr6 108620543 108620693 -73794549 + MIR SINE MIR 84 252 -10 244 291 93 0 chr6 108621226 108621312 -73793930 - L2 LINE L2 -4 3268 3175 819 234 109 0 chr6 108621615 108621816 -73793426 + MER58A DNA MER1_type 2 224 0 232 270 38 93 chr6 108621953 108622242 -73793000 - L1ME4a LINE L1 -13 6108 5836 23 0 0 0 chr6 108622300 108622323 -73792919 + AT_rich Low_complexity Low_complexity 1 23 0 5863 103 13 23 chr6 108622556 108623669 -73791573 + L1PA14 LINE L1 5044 6150 -11 446 301 42 12 chr6 108623718 108623863 -73791379 + MLT1J2 LTR MaLR 5 150 -259 1934 219 89 41 chr6 108623863 108624380 -73790862 - MLT1F LTR MaLR 0 542 1 446 301 42 12 chr6 108624380 108624399 -73790843 + MLT1J2 LTR MaLR 150 167 -242 486 162 0 0 chr6 108625193 108625267 -73789975 + LTR40b LTR ERVL 388 461 -1 1245 233 34 3 chr6 108625273 108625595 -73789647 + L1ME LINE L1 3350 3681 -2465 988 203 100 32 chr6 108625704 108625955 -73789287 + AluJb SINE Alu 37 304 -8 722 226 20 40 chr6 108625955 108626203 -73789039 + L1ME LINE L1 3676 3918 -2228 * 2389 209 54 5 chr6 108626199 108626783 -73788459 + L1ME LINE L1 5045 5671 -495 951 176 30 0 chr6 108626783 108626948 -73788294 + FAM SINE Alu 1 170 -5 2389 209 54 5 chr6 108626948 108627097 -73788145 + L1ME LINE L1 5671 5811 -355 894 67 0 37 chr6 108627720 108627854 -73787388 - L1PA14 LINE L1 -1 6160 6032 4571 100 5 0 chr6 108627855 108628496 -73786746 - L1PA14 LINE L1 -53 6108 5465 225 132 0 0 chr6 108629346 108629384 -73785858 + (TTCTC)n Simple_repeat Simple_repeat 5 42 0 670 223 22 0 chr6 108629384 108629523 -73785719 - FLAM_A SINE Alu 0 142 1 1946 176 28 76 chr6 108629524 108629984 -73785258 - MLT1D LTR MaLR -60 445 8 5475 130 29 9 chr6 108630814 108631997 -73783245 - L1PA15 LINE L1 0 6868 5652 422 141 0 0 chr6 108631998 108632069 -73783173 - L1PA15 LINE L1 -2111 4738 4668 * 5251 237 29 16 chr6 108632067 108633767 -73781475 - L1PA15 LINE L1 -3305 3544 1830 589 235 71 17 chr6 108634084 108634389 -73780853 - HAL1b LINE L1 -1 6311 746 489 287 81 32 chr6 108634601 108634911 -73780331 + HAL1 LINE L1 1266 1590 -917 2493 70 3 0 chr6 108634915 108635215 -73780027 + AluY SINE Alu 1 301 -10 3946 133 18 12 chr6 108635215 108636185 -73779057 + MER61B-int LTR ERV1 4188 5217 0 1279 189 51 15 chr6 108636185 108636491 -73778751 + MER61B LTR ERV1 1 396 -28 516 187 6 110 chr6 108636501 108636683 -73778559 - L1ME3 LINE L1 -90 6072 5910 479 202 26 0 chr6 108636985 108637099 -73778143 - L1MB2 LINE L1 0 6171 6055 306 167 37 0 chr6 108637130 108637184 -73778058 - MER66B LTR ERV1 -144 342 287 1073 175 10 0 chr6 108637187 108637381 -73777861 - L1MB2 LINE L1 -117 6054 5859 225 224 0 0 chr6 108637636 108637694 -73777548 + CT-rich Low_complexity Low_complexity 3 60 0 575 286 71 51 chr6 108637771 108637851 -73777391 - HAL1 LINE L1 -839 1668 1591 1780 124 46 0 chr6 108637851 108638134 -73777108 - AluY SINE Alu -15 296 1 575 286 71 51 chr6 108638134 108638448 -73776794 - HAL1 LINE L1 -916 1591 1266 607 229 71 16 chr6 108638660 108638952 -73776290 + HAL1b LINE L1 746 6294 -3 2418 60 0 10 chr6 108639326 108639626 -73775616 + AluY SINE Alu 1 297 -14 27 0 0 0 chr6 108639667 108639694 -73775548 + AT_rich Low_complexity Low_complexity 1 27 0 191 318 81 54 chr6 108640631 108640779 -73774463 - L2 LINE L2 -4 3309 3158 1938 155 0 0 chr6 108641979 108642270 -73772972 + AluJb SINE Alu 1 291 -21 13930 114 4 16 chr6 108642398 108645225 -73770017 - L1PA6 LINE L1 0 6154 3341 21 36 0 0 chr6 108645330 108645358 -73769884 + AT_rich Low_complexity Low_complexity 1 28 0 575 310 70 11 chr6 108645617 108645972 -73769270 - L1MB2 LINE L1 -342 5779 5404 641 212 24 18 chr6 108645975 108646145 -73769097 - L1MB2 LINE L1 -807 5339 5169 439 188 18 0 chr6 108646204 108646316 -73768926 + GA-rich Low_complexity Low_complexity 2 115 0 2167 196 76 27 chr6 108646767 108647252 -73767990 + LTR22 LTR ERVK 1 509 0 37419 74 14 3 chr6 108647252 108647943 -73767299 + HERVK22 LTR ERVK 1 683 -6154 2418 65 0 3 chr6 108647943 108648236 -73767006 - AluY SINE Alu -19 292 1 37419 74 14 3 chr6 108648236 108652379 -73762863 + HERVK22 LTR ERVK 683 4888 -1949 4295 87 2 0 chr6 108652377 108652942 -73762300 + HERVK22 LTR ERVK 5123 5688 -1149 * 1823 65 4 0 chr6 108653042 108653272 -73761970 + HERVK22 LTR ERVK 4658 4888 -1949 * 13271 80 1 3 chr6 108653270 108654990 -73760252 + HERVK22 LTR ERVK 5123 6837 0 2376 167 58 44 chr6 108654990 108655492 -73759750 + LTR22 LTR ERVK 1 509 0 1391 171 91 70 chr6 108656146 108656226 -73759016 + MLT2B2 LTR ERVL 1 78 -437 1996 127 4 0 chr6 108656226 108656525 -73758717 + AluSx SINE Alu 8 307 0 1391 171 91 70 chr6 108656525 108656899 -73758343 + MLT2B2 LTR ERVL 78 515 0 27 0 0 0 chr6 108657176 108657203 -73758039 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr6 108657584 108657615 -73757627 + AT_rich Low_complexity Low_complexity 1 31 0 380 240 19 19 chr6 108658712 108658816 -73756426 + U13 snRNA snRNA 1 104 0 281 114 26 0 chr6 108659087 108659147 -73756095 - L1MC1 LINE L1 -8 6336 6271 310 321 38 44 chr6 108659446 108659605 -73755637 + MER110-int LTR ERV1 152 309 -4338 653 360 26 40 chr6 108659805 108660299 -73754943 + MER110-int LTR ERV1 556 1042 -3605 781 277 37 100 chr6 108660368 108660919 -73754323 + MER110-int LTR ERV1 1059 3840 -2961 3713 142 42 3 chr6 108660977 108661617 -73753625 - L1MB4 LINE L1 -69 6111 5447 1652 206 21 34 chr6 108661652 108662030 -73753212 + MLT1A2 LTR MaLR 1 373 -1 1042 296 28 46 chr6 108662042 108662501 -73752741 + MER110-int LTR ERV1 1572 2022 -2625 656 333 45 9 chr6 108662695 108663031 -73752211 + MER110-int LTR ERV1 2242 2589 -2058 1557 282 82 61 chr6 108663191 108664184 -73751058 + MER110-int LTR ERV1 3621 4633 -14 232 232 18 18 chr6 108664330 108664386 -73750856 + MER110 LTR ERV1 107 162 -329 987 283 16 13 chr6 108664475 108664782 -73750460 + MER110 LTR ERV1 167 474 -17 26 64 0 0 chr6 108664909 108664956 -73750286 + AT_rich Low_complexity Low_complexity 1 47 0 23 78 0 0 chr6 108667112 108667163 -73748079 + AT_rich Low_complexity Low_complexity 1 51 0 660 215 55 43 chr6 108667691 108667854 -73747388 + MIR SINE MIR 24 188 -74 845 249 52 0 chr6 108668690 108668903 -73746339 - MER115 DNA AcHobo -3 690 467 4519 185 16 1 chr6 108669388 108670270 -73744972 + L1PA11 LINE L1 2306 3200 -2946 * 14546 128 18 24 chr6 108670265 108672670 -73742572 + L1PA6 LINE L1 1 2390 -3756 5122 48 0 20 chr6 108672670 108673329 -73741913 + L1PA5 LINE L1 5507 6154 0 * 22527 64 19 1 chr6 108673312 108677075 -73738167 + L1PA6 LINE L1 2367 6150 -4 8304 169 8 2 chr6 108677090 108679400 -73735842 + L1PA11 LINE L1 3839 6170 -4 25 31 0 0 chr6 108680529 108680561 -73734681 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 108681521 108681543 -73733699 + AT_rich Low_complexity Low_complexity 1 22 0 527 269 75 21 chr6 108681676 108681862 -73733380 - L2 LINE L2 0 3313 3118 1929 240 86 77 chr6 108682127 108682995 -73732247 - L1ME3A LINE L1 -5 6234 5359 2010 88 3 0 chr6 108683008 108683292 -73731950 - L1PA14 LINE L1 0 6161 5877 563 296 79 64 chr6 108683302 108683707 -73731535 - L1ME3A LINE L1 -848 5367 4957 482 238 149 72 chr6 108683784 108684309 -73730933 - L1ME3A LINE L1 -1278 4937 4373 1100 146 0 0 chr6 108684318 108684476 -73730766 - AluSg/x SINE Alu -22 290 133 1713 184 0 7 chr6 108684477 108684786 -73730456 - AluSx SINE Alu -5 307 1 248 240 53 0 chr6 108684787 108684862 -73730380 - L1ME3A LINE L1 -1905 4310 4232 1901 149 46 27 chr6 108684911 108685279 -73729963 - THE1C LTR MaLR 0 375 1 762 251 27 27 chr6 108685390 108685653 -73729589 - L1ME3A LINE L1 -2222 3993 3731 406 221 6 88 chr6 108685648 108685829 -73729413 - L1ME3A LINE L1 -3909 2306 2181 * 37 39 0 0 chr6 108685865 108685916 -73729326 + AT_rich Low_complexity Low_complexity 1 51 0 1835 148 10 10 chr6 108685916 108686206 -73729036 - AluSx SINE Alu -22 290 1 320 326 65 37 chr6 108686214 108686360 -73728882 - L1ME3A LINE L1 -5465 931 776 2303 89 0 0 chr6 108686360 108686651 -73728591 + AluSc SINE Alu 1 291 -18 320 326 65 37 chr6 108686651 108686719 -73728523 - L1ME3A LINE L1 -5620 776 711 2486 83 3 0 chr6 108686954 108687266 -73727976 - AluSp SINE Alu 0 313 1 1273 137 19 0 chr6 108687519 108687724 -73727518 + L1PA14 LINE L1 5951 6159 -2 302 303 28 14 chr6 108687780 108687922 -73727320 - L1ME3A LINE L1 -5923 282 139 251 347 28 0 chr6 108689016 108689088 -73726154 - L2 LINE L2 -9 3263 3190 1103 217 19 0 chr6 108689115 108689327 -73725915 - MER20 DNA MER1_type -3 216 1 418 291 155 28 chr6 108689575 108689788 -73725454 + MIR SINE MIR 23 262 0 1431 174 62 0 chr6 108691159 108691464 -73723778 + MER33 DNA MER1_type 1 324 0 835 342 50 16 chr6 108691727 108692303 -73722939 - L1MEc LINE L1 -5764 632 37 322 317 99 25 chr6 108692303 108692505 -73722737 - L1MEc LINE L1 -4247 2474 2258 543 268 50 29 chr6 108692590 108692935 -73722307 - L1MEc LINE L1 -861 2040 1835 * 4600 80 2 2 chr6 108692927 108693563 -73721679 - L1PA7 LINE L1 -894 5252 4617 6791 62 9 2 chr6 108693563 108694452 -73720790 + L1PA7 LINE L1 5260 6154 0 433 287 56 25 chr6 108694471 108694795 -73720447 - L1MEc LINE L1 -4786 1754 1421 672 328 108 46 chr6 108695465 108695837 -73719405 + L2 LINE L2 2861 3255 -17 225 280 45 38 chr6 108695900 108696032 -73719210 - MER103 DNA DNA -1 165 33 227 264 186 52 chr6 108697155 108697348 -73717894 + L2 LINE L2 2133 2351 -963 307 234 52 13 chr6 108697693 108697770 -73717472 - L2 LINE L2 -167 3105 3026 414 265 201 25 chr6 108698327 108698531 -73716711 + L2 LINE L2 3038 3277 -36 367 247 27 62 chr6 108699208 108699354 -73715888 + MIR SINE MIR 102 242 -20 200 286 52 26 chr6 108699403 108699480 -73715762 - MIR SINE MIR -164 98 20 1565 231 65 20 chr6 108699849 108700247 -73714995 + LTR52 LTR ERVL 1 416 -5 268 298 76 28 chr6 108700264 108700521 -73714721 + MLT1K LTR MaLR 290 582 -6 216 0 0 0 chr6 108700650 108700674 -73714568 + (T)n Simple_repeat Simple_repeat 1 24 0 309 243 83 127 chr6 108701615 108701796 -73713446 - MIR3 SINE MIR -5 203 31 * 322 299 41 0 chr6 108701789 108701886 -73713356 + MIR3 SINE MIR 91 191 -17 22 0 0 0 chr6 108702387 108702409 -73712833 + AT_rich Low_complexity Low_complexity 1 22 0 408 157 120 56 chr6 108702781 108702889 -73712353 - MLT1J2 LTR MaLR -7 439 325 1905 128 49 7 chr6 108702946 108703234 -73712008 - AluSx SINE Alu -12 300 1 329 206 44 0 chr6 108703375 108703443 -73711799 - MLT1J1 LTR MaLR -368 78 8 191 346 185 19 chr6 108703540 108703702 -73711540 - MER5A DNA MER1_type 0 189 1 367 277 93 2 chr6 108703714 108703843 -73711399 - MIR SINE MIR -87 175 37 23 68 0 0 chr6 108703921 108703965 -73711277 + AT_rich Low_complexity Low_complexity 1 44 0 3884 163 24 20 chr6 108704403 108705187 -73710055 + L1 LINE L1 4344 5130 -1016 * 8106 171 26 3 chr6 108705185 108706742 -73708500 - L1M LINE L1 -755 5391 3815 425 274 29 57 chr6 108706744 108706919 -73708323 - MLT-int LTR MaLR -751 984 815 1621 109 12 20 chr6 108707018 108707266 -73707976 + L1P4 LINE L1 5393 5638 -523 767 289 35 36 chr6 108707267 108707569 -73707673 + MLT-int LTR MaLR 929 1323 -368 2413 191 15 4 chr6 108707653 108708115 -73707127 + MLT1C LTR MaLR 1 467 0 282 350 50 31 chr6 108708201 108708366 -73706876 + MIR SINE MIR 25 191 -59 1958 185 45 3 chr6 108708417 108708795 -73706447 + MSTD LTR MaLR 3 396 0 219 36 0 0 chr6 108709020 108709048 -73706194 + (TG)n Simple_repeat Simple_repeat 2 29 0 740 255 53 65 chr6 108710994 108711241 -73704001 + MIR SINE MIR 1 244 -18 1737 162 129 6 chr6 108712217 108712550 -73702692 + MSTA LTR MaLR 1 374 -54 1985 192 91 81 chr6 108712572 108713180 -73702062 + MLT1E3 LTR MaLR 11 624 0 278 250 0 16 chr6 108713552 108713616 -73701626 + LTR16C LTR ERVL 427 489 -2 186 43 0 0 chr6 108714696 108714719 -73700523 + (T)n Simple_repeat Simple_repeat 1 23 0 708 183 0 44 chr6 108716422 108716559 -73698683 + FLAM_C SINE Alu 1 131 -2 266 0 0 29 chr6 108716571 108716606 -73698636 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 519 354 49 40 chr6 108716753 108717081 -73698161 - L2 LINE L2 -8 3264 2934 355 287 96 43 chr6 108717305 108717493 -73697749 + MIR SINE MIR 21 218 -44 533 281 83 38 chr6 108717735 108718048 -73697194 - MLT1H LTR MaLR 0 549 223 422 254 0 35 chr6 108718033 108718147 -73697095 - MLT1H LTR MaLR -427 122 13 * 707 269 47 10 chr6 108718657 108718850 -73696392 + LTR33 LTR ERVL 1 200 -321 180 0 0 0 chr6 108718851 108718871 -73696371 + (CAGC)n Simple_repeat Simple_repeat 1 20 0 281 321 27 27 chr6 108718978 108719090 -73696152 - MIR SINE MIR -59 203 92 1376 230 28 0 chr6 108721127 108721410 -73693832 + MLT1H LTR MaLR 1 291 -258 962 276 46 86 chr6 108721517 108721936 -73693306 + MLT1I LTR MaLR 1 402 -7 1518 239 81 5 chr6 108722019 108722450 -73692792 + L1ME1 LINE L1 5527 5990 -176 238 243 54 0 chr6 108722488 108722562 -73692680 + L1MB8 LINE L1 6100 6177 -1 201 358 25 25 chr6 108722579 108722660 -73692582 + L2 LINE L2 2260 2340 -974 6739 204 36 107 chr6 108723568 108724586 -73690656 + L1M2b LINE L1 1 806 -6403 1800 156 52 25 chr6 108724586 108724951 -73690291 + THE1C LTR MaLR 1 375 0 6739 204 36 107 chr6 108724951 108726173 -73689069 + L1M2b LINE L1 806 2113 -5096 12193 128 26 19 chr6 108726218 108729484 -73685758 + MER61C-int LTR ERV1 407 4102 -1115 4669 39 3 2 chr6 108729519 108730084 -73685158 - L1PA5 LINE L1 -8 6146 5581 22230 74 13 0 chr6 108730084 108733018 -73682224 - L1P LINE L1 -3176 2970 1 6725 137 42 10 chr6 108733020 108733076 -73682166 + MER61C-int LTR ERV1 4090 4143 -1074 351 0 0 0 chr6 108733076 108733115 -73682127 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6725 137 42 10 chr6 108733115 108734151 -73681091 + MER61C-int LTR ERV1 4143 5217 0 2713 101 46 26 chr6 108734151 108734567 -73680675 + MER61C LTR ERV1 1 424 -10 1085 253 121 15 chr6 108735337 108735792 -73679450 - L1MC4a LINE L1 -1634 6174 5672 2212 101 3 3 chr6 108736375 108736673 -73678569 + AluSx SINE Alu 1 298 -14 1528 163 16 95 chr6 108736849 108737217 -73678025 - MER44D DNA MER2_type 0 609 1 181 87 22 43 chr6 108737449 108737495 -73677747 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 189 171 0 0 chr6 108737753 108737788 -73677454 + CT-rich Low_complexity Low_complexity 1 35 0 293 239 15 0 chr6 108737789 108737856 -73677386 - L2 LINE L2 -1 3312 3245 1021 144 0 61 chr6 108738062 108738243 -73676999 + AluJo SINE Alu 101 270 -42 1177 245 31 13 chr6 108739402 108739720 -73675522 - L1M4 LINE L1 -2064 4082 3759 420 296 128 14 chr6 108739725 108740019 -73675223 - L1M4 LINE L1 -3404 2742 2396 1975 108 0 0 chr6 108740019 108740277 -73674965 + AluSx SINE Alu 40 297 -15 420 296 128 14 chr6 108740277 108740350 -73674892 - L1M4 LINE L1 -3750 2396 2333 27 29 0 0 chr6 108740400 108740434 -73674808 + AT_rich Low_complexity Low_complexity 1 34 0 2889 225 91 43 chr6 108740434 108742348 -73672894 - L1ME1 LINE L1 -9 6226 4207 389 132 0 26 chr6 108742607 108742683 -73672559 + (TTCTCC)n Simple_repeat Simple_repeat 3 76 0 22 35 0 0 chr6 108743160 108743189 -73672053 + AT_rich Low_complexity Low_complexity 1 29 0 2387 61 24 0 chr6 108743453 108743746 -73671496 - AluY SINE Alu -10 301 2 298 255 171 23 chr6 108744468 108744684 -73670558 + HAL1 LINE L1 2057 2304 -203 210 218 0 73 chr6 108744781 108744836 -73670406 + L2 LINE L2 3215 3265 -7 249 222 19 0 chr6 108746834 108746888 -73668354 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 21 0 0 0 chr6 108746922 108746943 -73668299 + AT_rich Low_complexity Low_complexity 1 21 0 838 176 9 109 chr6 108747530 108747740 -73667502 - MSTA LTR MaLR -50 378 190 6846 58 0 0 chr6 108747742 108749250 -73665992 - L1PA7 LINE L1 -12 6142 4630 30044 111 13 23 chr6 108749453 108749787 -73665455 - L1PA7 LINE L1 0 6469 6133 1926 110 88 0 chr6 108749787 108750060 -73665182 - AluY SINE Alu -14 297 1 30044 111 13 23 chr6 108750060 108755753 -73659489 - L1PA7 LINE L1 -336 6133 416 338 229 0 0 chr6 108805772 108805842 -73609400 - LTR33 LTR ERVL -427 94 25 513 221 66 0 chr6 108805862 108805984 -73609258 - MIR SINE MIR -69 193 64 695 247 101 39 chr6 108805995 108806383 -73608859 - L1ME1 LINE L1 -3085 3130 2719 311 247 87 13 chr6 108806581 108806731 -73608511 - L1ME1 LINE L1 -3756 2459 2299 500 323 102 20 chr6 108806775 108807168 -73608074 - L1ME1 LINE L1 -4096 2300 1876 23 33 0 0 chr6 108807177 108807207 -73608035 + AT_rich Low_complexity Low_complexity 1 30 0 352 259 82 82 chr6 108807246 108807478 -73607764 - L1ME1 LINE L1 -5566 639 408 476 300 98 9 chr6 108807526 108807872 -73607370 - L1MCc LINE L1 -899 2403 2106 540 277 184 51 chr6 108807914 108808615 -73606627 - L1MCc LINE L1 -5004 1927 1134 22 35 0 0 chr6 108809322 108809351 -73605891 + AT_rich Low_complexity Low_complexity 1 29 0 202 310 170 0 chr6 108809962 108810062 -73605180 - L2 LINE L2 0 3313 3197 386 282 0 0 chr6 108810200 108810271 -73604971 - MER58 DNA MER1_type -2349 71 1 22 80 0 0 chr6 108811001 108811051 -73604191 + AT_rich Low_complexity Low_complexity 1 50 0 460 255 84 21 chr6 108811302 108811510 -73603732 - MLT1H LTR MaLR 0 549 333 259 295 147 16 chr6 108812021 108812150 -73603092 + MIR SINE MIR 11 156 -106 200 301 236 16 chr6 108812580 108812703 -73602539 + MIR3 SINE MIR 2 151 -57 1424 261 42 52 chr6 108813642 108814387 -73600855 - L2 LINE L2 -80 3233 2499 1679 185 49 0 chr6 108814857 108815143 -73600099 + AluJb SINE Alu 2 301 -11 240 94 0 0 chr6 108816064 108816096 -73599146 + MLT1A2 LTR MaLR 1 32 -342 1618 168 41 47 chr6 108816100 108816464 -73598778 + MLT1A1 LTR MaLR 4 365 0 22 35 0 0 chr6 108816465 108816494 -73598748 + AT_rich Low_complexity Low_complexity 1 29 0 2089 105 0 11 chr6 108816706 108817011 -73598231 - AluSg SINE Alu 0 302 1 337 287 37 0 chr6 108817207 108817315 -73597927 + MIR SINE MIR 129 240 -22 305 354 51 0 chr6 108817898 108818056 -73597186 + MIR SINE MIR 20 185 -77 1142 232 53 43 chr6 108819390 108819757 -73595485 - L1MCc LINE L1 -5708 714 3 2382 235 73 35 chr6 108819764 108820977 -73594265 + L1ME1 LINE L1 4901 6161 -5 26 30 0 0 chr6 108821026 108821059 -73594183 + AT_rich Low_complexity Low_complexity 1 33 0 1520 195 174 5 chr6 108821853 108822227 -73593015 - MLT1C LTR MaLR -30 437 1 21 36 0 0 chr6 108822415 108822443 -73592799 + AT_rich Low_complexity Low_complexity 1 28 0 2019 108 7 14 chr6 108822447 108822744 -73592498 - AluSg SINE Alu -15 295 1 184 333 77 0 chr6 108824271 108824349 -73590893 + MIR SINE MIR 30 113 -95 190 338 45 53 chr6 108824551 108824684 -73590558 + L2 LINE L2 3180 3311 -2 5660 119 2 0 chr6 108825527 108826886 -73588356 - L1PA15 LINE L1 -3 6162 4783 552 302 34 19 chr6 108827364 108827569 -73587673 - LTR33 LTR ERVL -9 512 305 641 265 58 0 chr6 108827630 108827819 -73587423 - LTR33 LTR ERVL -321 200 1 447 276 75 51 chr6 108828437 108828623 -73586619 - MIR SINE MIR -23 239 45 1946 113 36 4 chr6 108828623 108828926 -73586316 + AluSq SINE Alu 1 312 0 447 276 75 51 chr6 108828926 108828952 -73586290 - MIR SINE MIR -217 45 21 188 345 18 0 chr6 108829050 108829105 -73586137 + MIR SINE MIR 37 92 -116 2895 13 0 0 chr6 108830840 108831158 -73584084 + AluYb8 SINE Alu 1 318 0 282 339 37 9 chr6 108831715 108831824 -73583418 + MIR3 SINE MIR 58 169 -39 313 325 25 51 chr6 108832194 108832351 -73582891 + L2 LINE L2 3118 3270 -2 272 336 20 55 chr6 108832680 108832826 -73582416 - MIR SINE MIR -57 205 65 394 352 85 32 chr6 108833969 108834370 -73580872 - L2 LINE L2 -343 2971 2550 412 348 15 113 chr6 108834400 108834880 -73580362 - L2 LINE L2 -32 3240 2808 534 86 0 0 chr6 108834970 108835051 -73580191 + L1MA4A LINE L1 5758 5838 -465 42091 39 23 1 chr6 108835065 108841082 -73574160 - L1PA3 LINE L1 -4 6151 2 2741 110 50 7 chr6 108841084 108841539 -73573703 + L1MA4A LINE L1 5824 6298 -5 933 289 185 61 chr6 108841558 108842441 -73572801 - L2 LINE L2 -607 2707 1716 595 320 18 18 chr6 108842735 108842960 -73572282 - MIR SINE MIR -36 226 2 652 249 60 74 chr6 108843387 108843888 -73571354 - L1ME4a LINE L1 -11 6110 5617 263 260 52 0 chr6 108843929 108844006 -73571236 + MIR SINE MIR 182 262 0 651 275 77 4 chr6 108844151 108844384 -73570858 - MIR SINE MIR 0 262 13 213 259 0 37 chr6 108846814 108846868 -73568374 - L2 LINE L2 0 3313 3262 213 108 0 0 chr6 108847142 108847179 -73568063 + (TC)n Simple_repeat Simple_repeat 1 37 0 22 88 0 0 chr6 108847271 108847328 -73567914 + AT_rich Low_complexity Low_complexity 1 57 0 391 330 0 0 chr6 108847337 108847428 -73567814 - MIR SINE MIR -57 151 61 862 279 20 12 chr6 108848588 108848839 -73566403 - MIR SINE MIR -2 260 8 372 259 19 19 chr6 108849016 108849124 -73566118 + MER5A DNA MER1_type 2 109 -80 265 265 169 0 chr6 108849351 108849434 -73565808 - MIR SINE MIR -68 140 44 265 423 34 6 chr6 108849480 108849655 -73565587 + MIR3 SINE MIR 16 195 -13 1013 218 0 0 chr6 108849686 108849906 -73565336 - AluJo SINE Alu 0 309 90 34 42 0 0 chr6 108849909 108849957 -73565285 + AT_rich Low_complexity Low_complexity 1 48 0 4066 130 42 49 chr6 108850355 108851146 -73564096 + LTR1 LTR ERV1 1 785 0 1382 244 67 9 chr6 108851268 108851733 -73563509 + MLT1E LTR MaLR 56 593 0 413 122 0 27 chr6 108852083 108852157 -73563085 - L1 LINE L1 -920 6645 6574 1997 95 79 0 chr6 108852158 108852474 -73562768 + L1MA1 LINE L1 5962 6302 0 291 278 81 29 chr6 108852772 108852945 -73562297 - L1 LINE L1 -1536 6029 5848 256 281 0 0 chr6 108852966 108853023 -73562219 + CT-rich Low_complexity Low_complexity 2 58 0 343 161 0 0 chr6 108853024 108853086 -73562156 - L1M1 LINE L1 -4606 2959 2898 1543 208 17 3 chr6 108853110 108853466 -73561776 - L1 LINE L1 -3592 3973 3613 5517 120 53 32 chr6 108853466 108854607 -73560635 - MER11A LTR ERVK 0 1266 3 2531 224 37 27 chr6 108854609 108855360 -73559882 - L1 LINE L1 -3947 3618 2860 956 212 21 0 chr6 108855353 108855542 -73559700 - L1 LINE L1 -5130 1435 1243 * 3836 259 43 21 chr6 108855545 108856888 -73558354 - L1ME LINE L1 -729 5437 4065 28 0 0 0 chr6 108857073 108857101 -73558141 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr6 108857227 108857252 -73557990 + (TA)n Simple_repeat Simple_repeat 2 26 0 1680 129 92 0 chr6 108857253 108857525 -73557717 - AluSq SINE Alu -16 297 1 225 267 0 0 chr6 108857944 108858004 -73557238 + L1MC4 LINE L1 7189 7248 -794 21 36 0 0 chr6 108858405 108858433 -73556809 + AT_rich Low_complexity Low_complexity 1 28 0 344 267 6 56 chr6 108858560 108858721 -73556521 - L1MC5 LINE L1 -50 7911 7759 664 267 72 35 chr6 108858782 108859100 -73556142 - L1MC5 LINE L1 -331 7630 7301 381 176 0 0 chr6 108860408 108860482 -73554760 + (TA)n Simple_repeat Simple_repeat 1 74 0 455 303 34 0 chr6 108861822 108861941 -73553301 - L2 LINE L2 0 3272 3150 476 325 45 42 chr6 108864758 108865136 -73550106 - ERVL LTR ERVL -588 5176 4798 447 35 0 0 chr6 108865334 108865391 -73549851 + (CA)n Simple_repeat Simple_repeat 2 58 0 316 328 46 52 chr6 108865985 108866159 -73549083 + MIR3 SINE MIR 2 174 -34 209 182 18 0 chr6 108867240 108867295 -73547947 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 23 0 0 0 chr6 108867560 108867583 -73547659 + AT_rich Low_complexity Low_complexity 1 23 0 778 313 12 12 chr6 108867624 108867864 -73547378 - MIR SINE MIR -8 254 15 8422 181 18 18 chr6 108868058 108869822 -73545420 - L1PA15-16 LINE L1 -2363 4486 2730 689 138 46 0 chr6 108869831 108869961 -73545281 - L1M LINE L1 -906 5397 5262 277 200 0 0 chr6 108869955 108870005 -73545237 + L1MA4A LINE L1 5827 5876 -427 * 721 163 0 0 chr6 108870006 108870147 -73545095 + L1MA4A LINE L1 6160 6300 -3 206 214 0 0 chr6 108870919 108870961 -73544281 + (TG)n Simple_repeat Simple_repeat 2 43 0 231 303 34 11 chr6 108871446 108871535 -73543707 - MIR SINE MIR -119 143 53 359 188 97 16 chr6 108871867 108871992 -73543250 + L1MC4 LINE L1 1995 7002 -1320 200 103 69 0 chr6 108871992 108872050 -73543192 + (TA)n Simple_repeat Simple_repeat 1 62 0 2412 247 30 35 chr6 108872176 108872823 -73542419 + L1PA16 LINE L1 3026 3689 -3876 2063 93 22 7 chr6 108872823 108873138 -73542104 + AluSg SINE Alu 1 319 0 2412 247 30 35 chr6 108873138 108873768 -73541474 + L1PA16 LINE L1 3689 4320 -3245 278 138 17 0 chr6 108873803 108873861 -73541381 + (CA)n Simple_repeat Simple_repeat 2 60 0 266 296 0 0 chr6 108873866 108873947 -73541295 - ERVL LTR ERVL -321 5443 5363 4543 183 40 8 chr6 108874924 108876543 -73538699 + L1PA16 LINE L1 5912 7575 -10 30 69 0 0 chr6 108876550 108876608 -73538634 + AT_rich Low_complexity Low_complexity 1 58 0 6739 50 0 0 chr6 108876702 108877537 -73537705 - L1PA5 LINE L1 -1997 4149 3312 10025 48 5 0 chr6 108877537 108879564 -73535678 + L1PA5 LINE L1 4122 6151 -3 6739 50 0 0 chr6 108879564 108879576 -73535666 - L1P LINE L1 -2833 3313 3302 27 81 0 0 chr6 108879853 108879915 -73535327 + AT_rich Low_complexity Low_complexity 1 62 0 550 311 94 9 chr6 108880163 108880375 -73534867 - L3 LINE CR1 -7 1570 1341 2157 107 0 0 chr6 108880386 108880684 -73534558 - AluY SINE Alu -13 298 1 276 374 34 14 chr6 108880781 108880928 -73534314 + L2 LINE L2 3123 3272 0 731 161 21 81 chr6 108881339 108881477 -73533765 + L1MD1 LINE L1 6067 6193 -49 2349 59 0 10 chr6 108881477 108881781 -73533461 + AluY SINE Alu 1 301 -10 731 161 21 81 chr6 108881781 108881828 -73533414 + L1MD1 LINE L1 6193 6241 -1 230 313 0 0 chr6 108883325 108883405 -73531837 + (TA)n Simple_repeat Simple_repeat 1 80 0 2120 130 37 34 chr6 108883562 108883917 -73531325 + THE1B LTR MaLR 9 364 0 21 36 0 0 chr6 108883985 108884013 -73531229 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 108884695 108884719 -73530523 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr6 108885136 108885172 -73530070 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 200 0 71 chr6 108885289 108885359 -73529883 + A-rich Low_complexity Low_complexity 2 66 0 14997 95 12 8 chr6 108885383 108888389 -73526853 - L1PA7 LINE L1 0 6154 3140 33 43 0 0 chr6 108888455 108888502 -73526740 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr6 108888716 108888741 -73526501 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr6 108889392 108889418 -73525824 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr6 108889829 108889874 -73525368 + AT_rich Low_complexity Low_complexity 1 45 0 203 171 0 0 chr6 108890629 108890664 -73524578 + A-rich Low_complexity Low_complexity 3 37 0 38 0 0 0 chr6 108891204 108891242 -73524000 + AT_rich Low_complexity Low_complexity 1 38 0 207 0 0 0 chr6 108891371 108891394 -73523848 + (CA)n Simple_repeat Simple_repeat 2 24 0 238 282 14 0 chr6 108892036 108892107 -73523135 - MER63 DNA MER1_type 0 1060 989 208 0 62 0 chr6 108892759 108892791 -73522451 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 327 200 0 0 chr6 108893055 108893110 -73522132 + LTR16B LTR ERVL 3 57 -407 903 318 20 0 chr6 108893429 108893731 -73521511 + HERV16 LTR ERVL 1159 1466 -3530 911 299 92 21 chr6 108893872 108894533 -73520709 + HERV16 LTR ERVL 1688 2455 -3309 676 360 74 26 chr6 108894596 108895016 -73520226 + HERV16 LTR ERVL 2523 2962 -2034 624 364 57 14 chr6 108895031 108895311 -73519931 + HERV16 LTR ERVL 4106 4397 -1257 181 256 81 35 chr6 108895328 108895414 -73519828 - MIR3 SINE MIR -4 204 115 316 409 20 23 chr6 108895438 108895834 -73519408 + HERV16 LTR ERVL 4605 4999 -765 305 290 58 45 chr6 108895871 108896026 -73519216 + HERV16 LTR ERVL 5062 5218 -436 747 321 10 5 chr6 108896257 108896466 -73518776 + LTR16B LTR ERVL 1 210 -254 234 221 29 0 chr6 108896472 108896540 -73518702 - MER69 DNA AcHobo -440 2086 2017 1001 319 91 31 chr6 108896565 108897114 -73518128 - MER69 DNA AcHobo -1750 776 195 3814 97 7 0 chr6 108897114 108897767 -73517475 - L1PA8 LINE L1 -673 5481 4823 4866 79 11 0 chr6 108897767 108898421 -73516821 + L1PA8 LINE L1 5499 6162 -10 395 243 32 122 chr6 108898431 108898620 -73516622 - MER69 DNA AcHobo -2320 206 35 1664 229 140 9 chr6 108901250 108901708 -73513534 + MLT2B1 LTR ERVL 3 520 0 1976 112 6 32 chr6 108901943 108902257 -73512985 - AluSg SINE Alu -4 306 1 2499 266 58 15 chr6 108902910 108903218 -73512024 + L1ME2 LINE L1 5254 5547 -787 2604 154 17 0 chr6 108903218 108903639 -73511603 - MSTA LTR MaLR 0 428 1 2499 266 58 15 chr6 108903639 108904211 -73511031 + L1ME2 LINE L1 5547 6333 -1 285 280 112 79 chr6 108905325 108906030 -73509212 - L1M4 LINE L1 -1589 4557 3824 8564 105 11 1 chr6 108906030 108908096 -73507146 - L1PA7 LINE L1 0 6154 4077 285 280 112 79 chr6 108908096 108908139 -73507103 - L1M4 LINE L1 -2322 3824 3784 207 0 0 0 chr6 108909025 108909048 -73506194 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1997 136 0 10 chr6 108909882 108910183 -73505059 - AluSx SINE Alu -14 298 1 211 259 103 0 chr6 108910209 108910267 -73504975 - L2 LINE L2 -37 3235 3172 252 130 0 0 chr6 108910350 108910396 -73504846 + LTR66 LTR ERVL 394 439 -171 305 250 0 0 chr6 108910396 108910464 -73504778 - L1MC4 LINE L1 -1341 6701 6634 1681 174 40 35 chr6 108910820 108911193 -73504049 - THE1C LTR MaLR 0 375 1 537 228 14 41 chr6 108911882 108912078 -73503164 + LTR41 LTR ERVL 585 795 0 21 0 0 0 chr6 108913016 108913037 -73502205 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr6 108914184 108914230 -73501012 + AT_rich Low_complexity Low_complexity 1 46 0 471 235 69 32 chr6 108914497 108914744 -73500498 - LTR37A LTR ERV1 0 426 213 31 26 0 0 chr6 108915114 108915152 -73500090 + AT_rich Low_complexity Low_complexity 1 38 0 2116 108 3 3 chr6 108915201 108915496 -73499746 - AluSc SINE Alu -14 295 1 24 0 0 0 chr6 108915526 108915550 -73499692 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr6 108915582 108915620 -73499622 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 108915739 108915760 -73499482 + AT_rich Low_complexity Low_complexity 1 21 0 405 236 45 0 chr6 108916558 108916715 -73498527 + (TA)n Simple_repeat Simple_repeat 1 164 0 23 0 0 0 chr6 108917745 108917768 -73497474 + AT_rich Low_complexity Low_complexity 1 23 0 2007 136 7 0 chr6 108917854 108918155 -73497087 - AluSq SINE Alu -8 305 3 626 313 83 22 chr6 108918351 108918770 -73496472 + MLT2F LTR ERVL 10 460 -203 1468 117 156 0 chr6 108919035 108919292 -73495950 - AluSg SINE Alu -3 297 1 261 305 21 11 chr6 108919384 108919479 -73495763 + MLT1J1 LTR MaLR 1 96 -350 570 331 66 15 chr6 108919491 108919763 -73495479 + MLT1J2 LTR MaLR 161 446 -4 363 285 147 53 chr6 108920299 108920950 -73494292 + L1M4 LINE L1 4409 5130 -1016 2570 160 77 1 chr6 108921258 108921903 -73493339 + L1PBa LINE L1 2635 3328 -3534 1881 124 3 31 chr6 108922163 108922503 -73492739 - AluSg SINE Alu 0 332 1 22 35 0 0 chr6 108922600 108922629 -73492613 + AT_rich Low_complexity Low_complexity 1 29 0 359 252 37 19 chr6 108922696 108922803 -73492439 + Zaphod DNA AcHobo 169 277 -3754 625 274 57 6 chr6 108923368 108923543 -73491699 - MIR SINE MIR -27 235 52 22 35 0 0 chr6 108923943 108923972 -73491270 + AT_rich Low_complexity Low_complexity 1 29 0 512 235 61 9 chr6 108924008 108924123 -73491119 + FLAM_C SINE Alu 1 121 -22 456 252 63 13 chr6 108924431 108924590 -73490652 + LTR43 LTR ERV1 155 321 -281 22 70 0 0 chr6 108925864 108925907 -73489335 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 108925951 108925972 -73489270 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr6 108927449 108927497 -73487745 + AT_rich Low_complexity Low_complexity 1 48 0 813 199 70 2 chr6 108927497 108927808 -73487434 + Ricksha DNA DNA 1 411 -2835 543 165 0 10 chr6 108927805 108927908 -73487334 + Ricksha DNA DNA 2494 2595 -651 * 1606 141 67 4 chr6 108927968 108928238 -73487004 - AluSx SINE Alu -21 291 5 272 281 0 0 chr6 108928238 108928293 -73486949 + MER21B LTR ERV1 33 90 -773 1985 280 71 56 chr6 108928314 108929079 -73486163 + MER21B LTR ERV1 19 794 -69 1127 126 31 129 chr6 108929499 108929785 -73485457 - Tigger2 DNA MER2_type -10 2708 2451 4475 143 21 4 chr6 108929849 108930575 -73484667 - Tigger2 DNA MER2_type -1972 746 9 514 207 138 0 chr6 108931266 108931382 -73483860 - MER69A DNA AcHobo -26 151 20 210 158 0 0 chr6 108931510 108931548 -73483694 + A-rich Low_complexity Low_complexity 1 38 0 225 292 180 78 chr6 108931689 108932216 -73483026 - L2 LINE L2 -447 2867 2287 663 243 130 0 chr6 108932227 108932412 -73482830 - MER3 DNA MER1_type 0 209 1 261 358 47 36 chr6 108932524 108932651 -73482591 - L2 LINE L2 -1240 2074 1950 2227 103 0 0 chr6 108932651 108932943 -73482299 + AluSx SINE Alu 1 292 -20 261 358 47 36 chr6 108932943 108933175 -73482067 - L2 LINE L2 -1364 1950 1711 207 170 0 0 chr6 108933181 108933228 -73482014 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 257 394 98 8 chr6 108936651 108936783 -73478459 + L2 LINE L2 3116 3259 -13 963 201 165 16 chr6 108939904 108940158 -73475084 + AluJb SINE Alu 2 293 -9 1765 180 58 0 chr6 108940169 108940496 -73474746 - MER7A DNA MER2_type 0 346 3 1846 185 5 44 chr6 108940914 108941324 -73473918 + L1MC1 LINE L1 5929 6322 -11 234 128 0 154 chr6 108941404 108941448 -73473794 - MLT2B1 LTR ERVL 0 520 491 264 30 0 0 chr6 108941448 108941481 -73473761 + (CA)n Simple_repeat Simple_repeat 2 34 0 234 128 0 154 chr6 108941481 108941514 -73473728 - MLT2B1 LTR ERVL -29 491 455 1787 175 7 0 chr6 108941523 108941843 -73473399 - AluSx SINE Alu 0 322 1 1643 238 82 21 chr6 108941900 108942328 -73472914 - MLT2B1 LTR ERVL -66 454 1 23 54 0 0 chr6 108942342 108942379 -73472863 + AT_rich Low_complexity Low_complexity 1 37 0 2098 150 28 19 chr6 108943428 108943789 -73471453 - THE1B LTR MaLR 0 364 1 11417 100 6 1 chr6 108943789 108945362 -73469880 - THE1B-int LTR MaLR 0 1580 1 1923 160 28 22 chr6 108945362 108945724 -73469518 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr6 108947762 108947783 -73467459 + AT_rich Low_complexity Low_complexity 1 21 0 1055 279 50 17 chr6 108947916 108948307 -73466935 - L2 LINE L2 -274 3039 2633 537 125 0 0 chr6 108948843 108948923 -73466319 + MADE1 DNA Mariner 1 80 0 26 30 0 0 chr6 108949028 108949061 -73466181 + AT_rich Low_complexity Low_complexity 1 33 0 1797 168 48 31 chr6 108950473 108950831 -73464411 - THE1B LTR MaLR 0 364 1 565 62 0 0 chr6 108950831 108950912 -73464330 - THE1B-int LTR MaLR 0 1580 1500 5664 43 16 0 chr6 108950913 108951607 -73463635 - L1PA4 LINE L1 -2 6153 5449 4542 48 0 7 chr6 108951607 108952196 -73463046 + L1P LINE L1 4819 5403 -743 1840 154 0 0 chr6 108952204 108952489 -73462753 - THE1B-int LTR MaLR -72 1508 1224 1122 161 17 0 chr6 108952496 108952676 -73462566 - THE1B LTR MaLR -181 183 1 25 0 0 0 chr6 108953524 108953549 -73461693 + AT_rich Low_complexity Low_complexity 1 25 0 1125 193 0 14 chr6 108953716 108953929 -73461313 + MER6B DNA MER2_type 1 210 0 273 322 30 15 chr6 108954811 108955010 -73460232 + L1ME LINE L1 4397 4598 -1548 27 29 0 0 chr6 108955679 108955713 -73459529 + AT_rich Low_complexity Low_complexity 1 34 0 461 272 64 17 chr6 108955802 108956037 -73459205 + L1ME LINE L1 5543 5788 -333 5343 151 24 41 chr6 108956139 108957224 -73458018 + MER11C LTR ERVK 1 1067 -4 1494 239 70 46 chr6 108957560 108958078 -73457164 + L1M3e LINE L1 -770 4294967055 -6493 962 259 22 33 chr6 108958184 108958707 -73456535 + L1M3e LINE L1 777 1233 -4095 1339 167 85 14 chr6 108958709 108958991 -73456251 - MSTA LTR MaLR -126 302 1 833 218 0 48 chr6 108958996 108959202 -73456040 - L1MA6 LINE L1 -211 6089 5894 261 98 0 0 chr6 108959284 108959325 -73455917 + (TG)n Simple_repeat Simple_repeat 2 42 0 888 300 94 48 chr6 108959910 108960485 -73454757 + L2 LINE L2 2709 3313 0 2041 142 0 3 chr6 108960930 108961241 -73454001 + AluSx SINE Alu 1 310 -2 2219 66 42 0 chr6 108961272 108961559 -73453683 - AluY SINE Alu -12 299 1 2068 117 0 0 chr6 108961559 108961841 -73453401 - AluSx SINE Alu -6 306 24 225 0 0 0 chr6 108962302 108962327 -73452915 + (CCA)n Simple_repeat Simple_repeat 3 27 0 230 259 86 0 chr6 108962413 108962471 -73452771 + L1M4c LINE L1 173 235 -6078 2743 179 56 53 chr6 108962685 108963350 -73451892 + L1M4c LINE L1 1060 1726 -4658 278 256 103 13 chr6 108963350 108963428 -73451814 + MLT1G1 LTR MaLR 232 316 -279 301 242 0 0 chr6 108963507 108963569 -73451673 - Tigger5 DNA MER2_type 0 2323 2262 1914 113 0 15 chr6 108963793 108964058 -73451184 + AluSg SINE Alu 1 261 -49 718 182 7 7 chr6 108964064 108964207 -73451035 - MER95 LTR ERV -288 143 1 183 339 17 17 chr6 108964416 108964475 -73450767 - MIR SINE MIR -196 66 8 415 252 168 13 chr6 108964622 108964777 -73450465 + MER5A DNA MER1_type 11 189 0 244 333 72 45 chr6 108964817 108964928 -73450314 - MIR SINE MIR -116 146 33 395 266 82 34 chr6 108965858 108966065 -73449177 + MER102a DNA MER1_type 104 320 -10 1768 266 63 56 chr6 108966936 108968566 -73446676 - L1MD3 LINE L1 -9 7986 6267 1007 248 61 21 chr6 108969248 108969575 -73445667 - MER58B DNA MER1_type 0 341 2 682 278 38 101 chr6 108969861 108970336 -73444906 - L2 LINE L2 -11 3302 2858 275 309 12 0 chr6 108970622 108970703 -73444539 + GA-rich Low_complexity Low_complexity 3 84 0 25 0 0 0 chr6 108971803 108971828 -73443414 + AT_rich Low_complexity Low_complexity 1 25 0 227 215 0 46 chr6 108971870 108971935 -73443307 + MIR SINE MIR 169 230 -32 196 348 11 22 chr6 108971914 108972003 -73443239 - MIR SINE MIR -128 134 47 * 480 307 39 71 chr6 108972036 108972458 -73442784 - L1MEd LINE L1 -4865 1254 980 200 288 0 0 chr6 108972571 108972637 -73442605 + T-rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr6 108973298 108973331 -73441911 + AT_rich Low_complexity Low_complexity 1 33 0 252 273 0 0 chr6 108973574 108973640 -73441602 + A-rich Low_complexity Low_complexity 1 66 0 211 287 46 0 chr6 108974833 108974920 -73440322 - MIR SINE MIR 0 262 172 651 207 0 0 chr6 108974930 108975051 -73440191 + FLAM_C SINE Alu 3 123 -10 23 0 0 0 chr6 108975200 108975223 -73440019 + AT_rich Low_complexity Low_complexity 1 23 0 482 301 28 0 chr6 108975398 108975611 -73439631 + LTR37B LTR ERV1 237 455 -13 1005 184 150 71 chr6 108975812 108976078 -73439164 + AluJo SINE Alu 2 288 -14 232 339 9 26 chr6 108976451 108976566 -73438676 - L2 LINE L2 -11 3302 3190 3126 158 12 49 chr6 108976693 108977268 -73437974 + MLT2B3 LTR ERVL 1 554 0 200 270 27 27 chr6 108978077 108978151 -73437091 - MIR3 SINE MIR -3 205 132 231 191 0 0 chr6 108978319 108978387 -73436855 + (CA)n Simple_repeat Simple_repeat 1 68 0 40595 36 21 2 chr6 108978432 108984262 -73430980 - L1PA2 LINE L1 -3 6152 207 218 300 0 75 chr6 108984331 108984411 -73430831 - L2 LINE L2 -1 3312 3239 23 0 0 0 chr6 108984467 108984490 -73430752 + AT_rich Low_complexity Low_complexity 1 23 0 429 304 8 0 chr6 108984504 108984629 -73430613 - MIR SINE MIR 0 262 137 10561 105 6 1 chr6 108984640 108987003 -73428239 - L1PA8 LINE L1 -4 6168 3798 11223 127 7 33 chr6 108987003 108988966 -73426276 + L1PA8 LINE L1 1887 3798 -2348 21 36 0 0 chr6 108989036 108989064 -73426178 + AT_rich Low_complexity Low_complexity 1 28 0 1552 90 0 18 chr6 108989145 108989368 -73425874 + AluSg/x SINE Alu 82 300 -10 227 398 82 4 chr6 108989532 108989763 -73425479 - L2 LINE L2 -459 2855 2607 290 80 20 0 chr6 108991534 108991584 -73423658 + (TC)n Simple_repeat Simple_repeat 2 52 0 444 250 75 0 chr6 108992048 108992208 -73423034 - MER113 DNA MER1_type? -344 177 6 188 83 0 28 chr6 108992356 108992392 -73422850 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1878 185 8 45 chr6 108992405 108992784 -73422458 + MLT1A1 LTR MaLR 1 365 0 19354 172 24 19 chr6 108993326 108998237 -73417005 - L1MA1 LINE L1 0 7721 2759 288 0 0 0 chr6 108998237 108998269 -73416973 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 19354 172 24 19 chr6 108998269 109001028 -73414214 - L1MA1 LINE L1 -4962 2759 13 1339 221 19 23 chr6 109001444 109001752 -73413490 - AluJb SINE Alu -4 308 2 498 277 14 27 chr6 109002025 109002173 -73413069 + MIR SINE MIR 47 192 -70 431 286 0 20 chr6 109002525 109002623 -73412619 + MER5B DNA MER1_type 4 99 -79 260 191 0 0 chr6 109002624 109002666 -73412576 - MER5A DNA MER1_type 0 189 148 219 308 22 33 chr6 109002649 109002740 -73412502 + MER5B DNA MER1_type 89 178 0 * 189 0 0 0 chr6 109002778 109002799 -73412443 + (T)n Simple_repeat Simple_repeat 1 21 0 241 286 32 0 chr6 109004999 109005062 -73410180 - MIR SINE MIR -68 140 76 218 315 62 31 chr6 109005343 109005473 -73409769 - L3 LINE CR1 -11 1566 1433 244 383 55 0 chr6 109005791 109005919 -73409323 - MIR SINE MIR -96 166 32 1704 248 21 0 chr6 109006926 109007349 -73407893 - L1P LINE L1 -926 5220 4789 * 5175 137 8 52 chr6 109007347 109008286 -73406956 + L1PA16 LINE L1 5254 6150 -16 307 299 30 45 chr6 109008334 109008468 -73406774 - L1MC4 LINE L1 -1339 6703 6572 25 0 0 0 chr6 109008689 109008714 -73406528 + AT_rich Low_complexity Low_complexity 1 25 0 756 258 88 0 chr6 109009611 109009805 -73405437 + MIR SINE MIR 3 213 -49 1191 124 6 0 chr6 109009818 109009996 -73405246 + AluSq SINE Alu 135 313 0 7469 29 9 0 chr6 109010545 109012182 -73403060 + L1PA4 LINE L1 4489 6155 0 196 364 66 8 chr6 109012791 109012912 -73402330 - L2 LINE L2 -894 2420 2293 204 330 75 11 chr6 109012954 109013048 -73402194 - L2 LINE L2 -5 3308 3209 24 0 0 0 chr6 109014005 109014029 -73401213 + AT_rich Low_complexity Low_complexity 1 24 0 224 267 209 19 chr6 109014182 109014287 -73400955 - MIR3 SINE MIR -1 207 83 359 261 44 89 chr6 109014664 109014844 -73400398 - MLT1J LTR MaLR -53 458 287 2015 174 62 7 chr6 109014988 109015391 -73399851 + MSTA LTR MaLR 4 428 0 283 93 0 0 chr6 109015435 109015478 -73399764 - MADE1 DNA Mariner -37 43 1 8356 187 38 6 chr6 109015478 109017049 -73398193 + MSTB-int LTR MaLR 31 1651 0 2056 180 18 52 chr6 109017051 109017490 -73397752 + MSTB LTR MaLR 3 426 0 288 352 62 37 chr6 109021506 109021779 -73393463 + L3 LINE CR1 566 845 -732 28 29 0 0 chr6 109021901 109021936 -73393306 + AT_rich Low_complexity Low_complexity 1 35 0 2624 272 16 22 chr6 109022001 109022832 -73392410 - L1ME1 LINE L1 -5 6230 5405 1271 260 38 3 chr6 109023011 109023380 -73391862 - L1ME1 LINE L1 -5515 881 500 446 265 99 68 chr6 109023691 109024178 -73391064 + L1ME LINE L1 5113 5618 -544 305 329 77 0 chr6 109024391 109024546 -73390696 + L3 LINE CR1 1218 1384 -193 183 80 0 0 chr6 109024646 109024671 -73390571 + (CA)n Simple_repeat Simple_repeat 2 26 0 201 121 0 0 chr6 109024714 109024747 -73390495 + (TG)n Simple_repeat Simple_repeat 2 34 0 1344 143 67 0 chr6 109024749 109024987 -73390255 - Tigger2 DNA MER2_type -13 2705 2452 2659 141 26 0 chr6 109025080 109025500 -73389742 - Tigger2 DNA MER2_type -1974 744 314 424 40 120 27 chr6 109025790 109025865 -73389377 - L1MA3 LINE L1 0 6305 6224 1261 241 189 52 chr6 109025924 109026447 -73388795 + MLT1E1 LTR MaLR 1 610 -44 1923 182 67 5 chr6 109026447 109026848 -73388394 + MSTB LTR MaLR 1 426 0 1261 241 189 52 chr6 109026848 109026896 -73388346 + MLT1E1 LTR MaLR 610 650 -4 21 0 0 0 chr6 109027873 109027894 -73387348 + AT_rich Low_complexity Low_complexity 1 21 0 238 290 65 65 chr6 109027925 109028187 -73387055 - L1ME LINE L1 -536 5585 5324 28 61 0 0 chr6 109028335 109028384 -73386858 + AT_rich Low_complexity Low_complexity 1 49 0 26 82 0 0 chr6 109028628 109028689 -73386553 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr6 109028951 109028974 -73386268 + AT_rich Low_complexity Low_complexity 1 23 0 248 224 30 0 chr6 109029089 109029156 -73386086 + (TA)n Simple_repeat Simple_repeat 2 70 0 1880 214 75 25 chr6 109029249 109029536 -73385706 - MLT1D LTR MaLR 0 505 182 1832 101 24 49 chr6 109029536 109029846 -73385396 - AluSx SINE Alu 0 306 4 1880 214 75 25 chr6 109029846 109030038 -73385204 - MLT1D LTR MaLR -323 182 1 21 71 0 0 chr6 109030617 109030659 -73384583 + AT_rich Low_complexity Low_complexity 1 42 0 286 170 38 28 chr6 109030941 109031047 -73384195 + (TATAA)n Simple_repeat Simple_repeat 2 108 0 367 295 9 9 chr6 109031231 109031336 -73383906 - L2 LINE L2 -1 3312 3208 273 278 87 43 chr6 109031336 109031451 -73383791 - MER63A DNA MER1_type 0 210 91 350 321 158 27 chr6 109031462 109031683 -73383559 - L2 LINE L2 -1822 1492 1243 335 304 84 69 chr6 109031693 109032098 -73383144 - LTR33 LTR ERVL -27 494 84 906 322 74 44 chr6 109032147 109032672 -73382570 - L2 LINE L2 -2070 1244 704 341 175 42 142 chr6 109032715 109032835 -73382407 - MLT2C1 LTR ERVL 0 397 290 635 224 13 0 chr6 109033459 109033615 -73381627 - L1MA10 LINE L1 -2 6332 6175 269 265 30 30 chr6 109033828 109033960 -73381282 - L1MDa LINE L1 -5084 1456 1325 289 416 64 12 chr6 109034257 109034586 -73380656 - L2 LINE L2 -379 2935 2590 257 346 37 22 chr6 109034761 109034897 -73380345 - L2 LINE L2 -684 2630 2493 677 207 7 29 chr6 109035775 109036032 -73379210 + CT-rich Low_complexity Low_complexity 1 251 0 25 31 0 0 chr6 109036207 109036239 -73379003 + AT_rich Low_complexity Low_complexity 1 32 0 228 209 11 143 chr6 109036978 109037069 -73378173 - MER94 DNA DNA -39 95 17 1648 216 49 14 chr6 109037179 109037624 -73377618 + L1 LINE L1 4154 4614 -1532 270 0 0 0 chr6 109037660 109037690 -73377552 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 12856 205 22 11 chr6 109037772 109042016 -73373226 + L1PA15-16 LINE L1 5 3971 -2878 2900 262 98 48 chr6 109042011 109044082 -73371160 - L1MEc LINE L1 -3079 3136 950 * 462 36 0 0 chr6 109044082 109044138 -73371104 + (TG)n Simple_repeat Simple_repeat 1 56 0 2900 262 98 48 chr6 109044138 109044522 -73370720 - L1MEc LINE L1 -5265 950 587 264 339 29 23 chr6 109044582 109044756 -73370486 - MER58C DNA MER1_type -34 181 7 433 315 13 0 chr6 109044762 109044911 -73370331 - L1MEc LINE L1 -5805 591 441 23 33 0 0 chr6 109044926 109044956 -73370286 + AT_rich Low_complexity Low_complexity 1 30 0 304 328 24 16 chr6 109045013 109045138 -73370104 - L1MEc LINE L1 -5994 402 277 516 296 89 0 chr6 109045139 109045308 -73369934 - L1M4 LINE L1 -1259 4887 4704 2356 160 48 2 chr6 109045329 109045767 -73369475 - MER34B LTR ERV1 -103 462 5 3215 80 0 11 chr6 109045917 109046370 -73368872 - LTR7 LTR ERV1 -2 448 1 2527 74 48 13 chr6 109046370 109046749 -73368493 - HERVH LTR ERV1 0 7713 7322 1295 142 23 5 chr6 109046747 109046966 -73368276 - HERVH LTR ERV1 -1894 5819 5597 * 8543 85 30 41 chr6 109046963 109048640 -73366602 - HERVH LTR ERV1 -2564 5149 3492 951 133 7 0 chr6 109048630 109048780 -73366462 - HERVH LTR ERV1 -4423 3290 3140 * 15942 104 21 9 chr6 109048759 109051594 -73363648 - HERVH LTR ERV1 -4718 2995 1 714 83 0 19 chr6 109051596 109051704 -73363538 - LTR7 LTR ERV1 -2 448 343 332 266 75 52 chr6 109051705 109052220 -73363022 - L1M4 LINE L1 -2786 3360 2859 2251 160 46 7 chr6 109052220 109052632 -73362610 + MSTA LTR MaLR 1 428 0 332 266 75 52 chr6 109052632 109053058 -73362184 - L1M4 LINE L1 -3287 2859 2320 187 172 0 62 chr6 109053060 109053124 -73362118 + (TA)n Simple_repeat Simple_repeat 2 61 0 3346 119 10 0 chr6 109053181 109053668 -73361574 - L1P3 LINE L1 -5962 499 8 14978 107 34 0 chr6 109053670 109056708 -73358534 + L1PA7 LINE L1 3074 6149 -5 1603 182 0 4 chr6 109056721 109056996 -73358246 - AluSx SINE Alu -36 276 3 290 216 118 0 chr6 109057015 109057117 -73358125 - L1M4 LINE L1 -3864 2282 2169 28 0 0 0 chr6 109057480 109057508 -73357734 + AT_rich Low_complexity Low_complexity 1 28 0 42192 38 22 1 chr6 109059902 109065931 -73349311 - L1PA3 LINE L1 0 6155 1 849 216 5 34 chr6 109067000 109067204 -73348038 - MER3 DNA MER1_type -11 198 1 192 391 75 15 chr6 109067500 109067633 -73347609 - L2 LINE L2 0 3272 3132 210 213 66 33 chr6 109067927 109067988 -73347254 + L2 LINE L2 2420 2482 -832 227 172 0 35 chr6 109068146 109068204 -73347038 + CT-rich Low_complexity Low_complexity 4 59 0 196 359 58 32 chr6 109068861 109069017 -73346225 - L2 LINE L2 -1007 2307 2148 301 380 42 19 chr6 109069633 109069846 -73345396 + L2 LINE L2 2676 2893 -421 1925 147 3 19 chr6 109070146 109070459 -73344783 + AluSx SINE Alu 3 310 -2 487 292 57 8 chr6 109071950 109072214 -73343028 + L1M4 LINE L1 4052 4328 -1818 352 247 84 63 chr6 109072831 109073021 -73342221 + L1M4 LINE L1 5006 5199 -947 638 181 0 125 chr6 109073025 109073185 -73342057 - Tigger3(Golem) DNA MER2_type -1 3028 2889 351 274 0 0 chr6 109073187 109073260 -73341982 - Tigger3(Golem) DNA MER2_type -2953 76 4 312 299 63 5 chr6 109073318 109073602 -73341640 + L1M2 LINE L1 5255 5571 -733 203 147 0 0 chr6 109074243 109074277 -73340965 + (TGG)n Simple_repeat Simple_repeat 1 34 0 775 168 0 0 chr6 109074299 109074424 -73340818 + FLAM_C SINE Alu 1 125 -8 227 319 37 37 chr6 109075886 109076021 -73339221 + MLT1J2 LTR MaLR 266 400 -50 399 300 150 6 chr6 109076051 109076231 -73339011 + MIR SINE MIR 8 213 -49 439 344 68 48 chr6 109076331 109076806 -73338436 + L2 LINE L2 2554 3042 -271 2052 108 10 0 chr6 109077400 109077688 -73337554 - AluSx SINE Alu -16 296 6 270 375 21 10 chr6 109077756 109077852 -73337390 + L2 LINE L2 3140 3236 -36 563 301 18 0 chr6 109078264 109078430 -73336812 + MLT1J LTR MaLR 6 174 -337 943 312 36 3 chr6 109078658 109078988 -73336254 + HAL1 LINE L1 4 344 -2163 514 301 67 0 chr6 109079768 109079961 -73335281 + HAL1 LINE L1 4 209 -2298 2433 142 30 30 chr6 109079962 109080428 -73334814 + LTR10A LTR ERV1 45 510 -99 335 283 20 0 chr6 109080439 109080538 -73334704 + HAL1 LINE L1 201 301 -2206 1014 289 48 63 chr6 109080659 109081217 -73334025 + HAL1 LINE L1 472 1021 -1486 879 287 115 52 chr6 109081282 109081959 -73333283 + HAL1 LINE L1 1160 1879 -628 396 0 0 0 chr6 109084789 109084833 -73330409 + (TTA)n Simple_repeat Simple_repeat 2 45 0 201 171 0 0 chr6 109084981 109085016 -73330226 + A-rich Low_complexity Low_complexity 1 35 0 1065 191 56 0 chr6 109086753 109087004 -73328238 + L1MA8 LINE L1 6023 6287 -4 209 250 0 0 chr6 109087081 109087129 -73328113 - MIR SINE MIR -132 130 83 * 235 335 92 35 chr6 109087112 109087339 -73327903 + L2 LINE L2 2475 2714 -600 31 26 0 0 chr6 109087970 109088008 -73327234 + AT_rich Low_complexity Low_complexity 1 38 0 231 88 0 0 chr6 109088223 109088257 -73326985 + (ATG)n Simple_repeat Simple_repeat 3 36 0 679 160 23 12 chr6 109089620 109089885 -73325357 + GA-rich Low_complexity Low_complexity 1 268 0 200 350 160 10 chr6 109091626 109091726 -73323516 - MIR SINE MIR -67 141 27 22 35 0 0 chr6 109092296 109092325 -73322917 + AT_rich Low_complexity Low_complexity 1 29 0 221 258 28 124 chr6 109092325 109092503 -73322739 - MIR SINE MIR -20 242 82 224 281 25 25 chr6 109092728 109092849 -73322393 + MIR SINE MIR 86 206 -56 27 0 0 0 chr6 109092896 109092923 -73322319 + AT_rich Low_complexity Low_complexity 1 27 0 29 0 0 0 chr6 109094102 109094131 -73321111 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr6 109094446 109094490 -73320752 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr6 109095129 109095154 -73320088 + AT_rich Low_complexity Low_complexity 1 25 0 372 133 0 0 chr6 109095742 109095802 -73319440 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 203 359 43 8 chr6 109096353 109096470 -73318772 - L2 LINE L2 -429 2885 2765 23 33 0 0 chr6 109098322 109098352 -73316890 + AT_rich Low_complexity Low_complexity 1 30 0 264 59 0 0 chr6 109100393 109100427 -73314815 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 291 54 0 0 chr6 109101000 109101037 -73314205 + (TG)n Simple_repeat Simple_repeat 2 38 0 1544 147 66 4 chr6 109101051 109101323 -73313919 - AluSx SINE Alu -21 291 3 22 0 0 0 chr6 109101334 109101356 -73313886 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 109102568 109102590 -73312652 + AT_rich Low_complexity Low_complexity 1 22 0 588 29 0 0 chr6 109102815 109102885 -73312357 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 311 221 21 0 chr6 109103281 109103376 -73311866 + CT-rich Low_complexity Low_complexity 1 97 0 443 254 5 78 chr6 109103397 109103461 -73311781 + CT-rich Low_complexity Low_complexity 2 69 -111 2063 95 24 7 chr6 109103461 109103755 -73311487 - AluSq SINE Alu -12 301 3 443 254 5 78 chr6 109103755 109103883 -73311359 + CT-rich Low_complexity Low_complexity 69 180 0 3762 192 40 21 chr6 109105424 109106359 -73308883 - L1M2 LINE L1 -756 6092 5257 2193 116 0 3 chr6 109106359 109106661 -73308581 - AluSg SINE Alu -9 301 1 3762 192 40 21 chr6 109106661 109106770 -73308472 - L1M2 LINE L1 -1591 5257 5152 2553 227 42 3 chr6 109106762 109107423 -73307819 - L1M2 LINE L1 -2829 4019 3333 * 1661 180 145 11 chr6 109107439 109107812 -73307430 - MSTA LTR MaLR -5 423 1 1405 239 72 17 chr6 109107812 109108313 -73306929 - L1M2 LINE L1 -3522 3326 2795 784 195 39 1 chr6 109108323 109108531 -73306711 - L1MC/D LINE L1 -743 5403 5218 251 324 29 0 chr6 109108946 109109014 -73306228 + L2 LINE L2 3154 3223 -49 2220 120 23 6 chr6 109109412 109109761 -73305481 + THE1A LTR MaLR 1 355 0 1103 196 10 0 chr6 109110065 109110264 -73304978 - THE1A LTR MaLR 0 355 155 2882 186 75 11 chr6 109110264 109110950 -73304292 + L1MA7 LINE L1 5505 6166 -2 28 0 0 0 chr6 109110960 109110988 -73304254 + AT_rich Low_complexity Low_complexity 1 28 0 276 349 96 19 chr6 109112362 109112571 -73302671 - MIR SINE MIR -10 252 28 22 0 0 0 chr6 109113896 109113918 -73301324 + AT_rich Low_complexity Low_complexity 1 22 0 234 342 125 8 chr6 109116001 109116121 -73299121 - MIR3 SINE MIR -21 187 54 1119 243 108 22 chr6 109116539 109116901 -73298341 + MER97b DNA MER1_type? 4 396 -657 30 0 0 0 chr6 109117056 109117086 -73298156 + AT_rich Low_complexity Low_complexity 1 30 0 344 239 75 110 chr6 109117192 109117302 -73297940 + MER97c DNA MER1_type? 768 880 -210 1118 171 98 154 chr6 109117302 109117834 -73297408 - MLT1D LTR MaLR -3 502 1 344 239 75 110 chr6 109117834 109117867 -73297375 + MER97c DNA MER1_type? 880 913 -177 279 0 0 0 chr6 109117867 109117898 -73297344 + (TG)n Simple_repeat Simple_repeat 2 32 0 344 239 75 110 chr6 109117898 109118088 -73297154 + MER97c DNA MER1_type? 913 1090 0 189 0 0 0 chr6 109118914 109118935 -73296307 + (TA)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr6 109119006 109119035 -73296207 + AT_rich Low_complexity Low_complexity 1 29 0 371 183 0 11 chr6 109120023 109120103 -73295139 - AluS SINE Alu -244 57 1 363 318 132 19 chr6 109120548 109120806 -73294436 + HAL1 LINE L1 267 553 -1954 21 36 0 0 chr6 109120894 109120922 -73294320 + AT_rich Low_complexity Low_complexity 1 28 0 613 350 45 0 chr6 109120941 109121164 -73294078 - MIR SINE MIR -26 236 4 596 281 59 5 chr6 109121171 109121374 -73293868 + HAL1 LINE L1 693 906 -1601 1489 204 88 41 chr6 109121735 109122258 -73292984 + MER67C LTR ERV1 61 514 0 36 19 0 19 chr6 109122272 109122284 -73292958 + AT_rich Low_complexity Low_complexity 1 12 -41 2173 134 27 16 chr6 109122284 109122656 -73292586 + L1PA16 LINE L1 5782 6157 -9 36 19 0 19 chr6 109122656 109122697 -73292545 + AT_rich Low_complexity Low_complexity 12 53 0 625 341 134 31 chr6 109122892 109123000 -73292242 - L2 LINE L2 -665 2649 2554 468 0 0 0 chr6 109123000 109123052 -73292190 + (TG)n Simple_repeat Simple_repeat 2 53 0 625 341 134 31 chr6 109123052 109123890 -73291352 - L2 LINE L2 -760 2554 1605 939 152 13 6 chr6 109123905 109124063 -73291179 - L1MA9 LINE L1 -289 6023 5865 598 173 107 13 chr6 109124054 109124204 -73291038 + L1MA9 LINE L1 6075 6238 -74 * 265 132 0 147 chr6 109124298 109124366 -73290876 + L1MA9 LINE L1 6255 6312 0 22 0 0 0 chr6 109125938 109125960 -73289282 + AT_rich Low_complexity Low_complexity 1 22 0 441 81 0 0 chr6 109127973 109128035 -73287207 + (TA)n Simple_repeat Simple_repeat 2 63 0 198 383 0 28 chr6 109128300 109128407 -73286835 - L2 LINE L2 -16 3256 3153 781 310 41 59 chr6 109128531 109128918 -73286324 + L2 LINE L2 2930 3309 -4 391 403 0 0 chr6 109128976 109129125 -73286117 + MIR3 SINE MIR 33 181 -27 331 198 30 0 chr6 109129167 109129268 -73285974 - L1MA4 LINE L1 0 6300 6197 22 35 0 0 chr6 109129394 109129423 -73285819 + AT_rich Low_complexity Low_complexity 1 29 0 414 150 38 38 chr6 109129659 109129739 -73285503 + MER63 DNA MER1_type 1 706 -130 29 0 0 0 chr6 109131011 109131040 -73284202 + AT_rich Low_complexity Low_complexity 1 29 0 361 234 0 0 chr6 109131584 109131661 -73283581 - AluJ/FRAM SINE Alu -2 300 224 24 0 0 0 chr6 109131936 109131960 -73283282 + AT_rich Low_complexity Low_complexity 1 24 0 276 30 0 0 chr6 109131962 109131995 -73283247 + (TG)n Simple_repeat Simple_repeat 2 34 0 33 0 0 0 chr6 109132078 109132111 -73283131 + AT_rich Low_complexity Low_complexity 1 33 0 2601 168 17 0 chr6 109133414 109133891 -73281351 + MER31A LTR ERV1 1 485 0 29 0 0 0 chr6 109135155 109135184 -73280058 + AT_rich Low_complexity Low_complexity 1 29 0 4886 191 107 55 chr6 109135317 109136664 -73278578 + L1MC1 LINE L1 28 1444 -4982 933 165 71 42 chr6 109136665 109136877 -73278365 + THE1C LTR MaLR 1 218 -157 6643 184 20 45 chr6 109136936 109137580 -73277662 - L1PA13 LINE L1 -4092 2705 2047 578 34 0 67 chr6 109137580 109137669 -73277573 - L1PA4 LINE L1 0 6155 6073 6643 184 20 45 chr6 109137669 109138668 -73276574 - L1PA13 LINE L1 -4750 2047 1076 * 12632 194 15 15 chr6 109138665 109141389 -73273853 + L1P LINE L1 2124 4848 -1298 4778 215 40 47 chr6 109141396 109142242 -73273000 + L1MC1 LINE L1 4545 5395 -1218 2392 67 0 13 chr6 109142242 109142557 -73272685 + AluY SINE Alu 1 311 0 4778 215 40 47 chr6 109142557 109143446 -73271796 + L1MC1 LINE L1 5395 6252 -361 2006 120 7 13 chr6 109143446 109143755 -73271487 + AluSc SINE Alu 1 307 -2 4778 215 40 47 chr6 109143755 109144109 -73271133 + L1MC1 LINE L1 6252 6607 -6 180 0 0 0 chr6 109146064 109146084 -73269158 + (TTG)n Simple_repeat Simple_repeat 2 21 0 180 324 14 42 chr6 109147046 109147117 -73268125 + L2 LINE L2 3228 3296 -17 1554 183 69 0 chr6 109147463 109147737 -73267505 + AluJb SINE Alu 3 295 -17 207 0 0 0 chr6 109147737 109147760 -73267482 + (TA)n Simple_repeat Simple_repeat 2 24 0 22 56 0 0 chr6 109147884 109147920 -73267322 + AT_rich Low_complexity Low_complexity 1 36 0 1633 185 43 56 chr6 109147983 109148378 -73266864 + MLT1B LTR MaLR 1 390 0 290 272 26 0 chr6 109148875 109148989 -73266253 + (TA)n Simple_repeat Simple_repeat 2 118 0 192 77 0 0 chr6 109149243 109149269 -73265973 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 200 292 0 21 chr6 109149931 109150027 -73265215 + A-rich Low_complexity Low_complexity 2 95 0 346 371 47 0 chr6 109150291 109150504 -73264738 + HAL1 LINE L1 1431 1653 -854 205 275 0 38 chr6 109150824 109150904 -73264338 + (TA)n Simple_repeat Simple_repeat 2 78 0 437 299 109 63 chr6 109150955 109151640 -73263602 + L1ME1 LINE L1 2120 2836 -3310 557 177 23 17 chr6 109151646 109151821 -73263421 + (TA)n Simple_repeat Simple_repeat 2 177 0 300 111 0 0 chr6 109151821 109151866 -73263376 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr6 109151978 109152001 -73263241 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 109152137 109152159 -73263083 + AT_rich Low_complexity Low_complexity 1 22 0 402 266 49 11 chr6 109152209 109152393 -73262849 + L1ME1 LINE L1 2801 2991 -3155 3608 57 0 0 chr6 109152482 109152938 -73262304 + L1PA8 LINE L1 5717 6172 0 4025 271 84 23 chr6 109153165 109153590 -73261652 + L1ME1 LINE L1 3073 3471 -2675 1258 177 62 0 chr6 109153590 109153850 -73261392 + L1PA16 LINE L1 5891 6166 0 4025 271 84 23 chr6 109153850 109155047 -73260195 + L1ME1 LINE L1 3471 4845 -1301 2044 104 0 0 chr6 109155047 109155325 -73259917 + AluSx SINE Alu 35 312 0 4025 271 84 23 chr6 109155325 109155732 -73259510 + L1ME1 LINE L1 4845 5226 -920 555 176 0 20 chr6 109155811 109155913 -73259329 + Tigger7 DNA MER2_type 23 122 -2365 734 264 11 62 chr6 109155917 109156190 -73259052 + L1ME1 LINE L1 5903 6161 -5 204 102 102 0 chr6 109156415 109156464 -73258778 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr6 109156678 109156706 -73258536 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr6 109156842 109156882 -73258360 + AT_rich Low_complexity Low_complexity 1 40 0 356 318 39 0 chr6 109159279 109159408 -73255834 + MER94 DNA DNA 1 134 0 254 365 52 0 chr6 109159422 109159537 -73255705 + MIR SINE MIR 19 139 -69 444 233 38 3 chr6 109160022 109160363 -73254879 + (TA)n Simple_repeat Simple_repeat 1 353 0 192 153 17 34 chr6 109160891 109160950 -73254292 + CT-rich Low_complexity Low_complexity 3 60 0 27 29 0 0 chr6 109162573 109162607 -73252635 + AT_rich Low_complexity Low_complexity 1 34 0 374 313 222 5 chr6 109162733 109162931 -73252311 + MIR SINE MIR 8 248 -14 650 319 20 32 chr6 109163700 109163948 -73251294 + MIR SINE MIR 5 249 -13 25 75 0 0 chr6 109164223 109164276 -73250966 + AT_rich Low_complexity Low_complexity 1 53 0 196 237 0 0 chr6 109165189 109165227 -73250015 - MIR SINE MIR -14 248 211 691 247 139 5 chr6 109165482 109165676 -73249566 - MIR SINE MIR -41 221 2 249 33 0 0 chr6 109165964 109165994 -73249248 + (CG)n Simple_repeat Simple_repeat 2 31 0 * 387 0 0 0 chr6 109165993 109166036 -73249206 + (CA)n Simple_repeat Simple_repeat 1 43 0 40 73 0 0 chr6 109166403 109166485 -73248757 + AT_rich Low_complexity Low_complexity 1 82 0 1465 208 0 34 chr6 109166947 109167269 -73247973 - AluJo SINE Alu -1 311 1 378 0 0 0 chr6 109169470 109169512 -73245730 + (TG)n Simple_repeat Simple_repeat 2 43 0 181 191 0 43 chr6 109169606 109169653 -73245589 - MIR3 SINE MIR -15 193 149 30 45 0 0 chr6 109169952 109169996 -73245246 + AT_rich Low_complexity Low_complexity 1 44 0 201 74 0 0 chr6 109173216 109173243 -73241999 + (A)n Simple_repeat Simple_repeat 1 27 0 183 371 0 0 chr6 109174268 109174330 -73240912 + L2 LINE L2 3210 3271 -1 411 326 179 19 chr6 109174559 109174866 -73240376 + L2 LINE L2 208 563 -2751 391 196 82 0 chr6 109174870 109174967 -73240275 + L2 LINE L2 811 915 -2399 1144 301 36 25 chr6 109176401 109176846 -73238396 + LTR16B LTR ERVL 9 458 -6 441 0 0 0 chr6 109176846 109176895 -73238347 + (CATAA)n Simple_repeat Simple_repeat 1 49 0 1571 170 35 17 chr6 109177422 109177710 -73237532 - AluJo SINE Alu -17 295 3 640 142 8 8 chr6 109178236 109178363 -73236879 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 752 313 124 14 chr6 109178554 109178982 -73236260 + L2 LINE L2 1898 2372 -942 1876 187 39 8 chr6 109179301 109179686 -73235556 + MLT2C1 LTR ERVL 1 397 0 291 307 47 24 chr6 109179750 109179877 -73235365 + L2 LINE L2 3179 3308 -5 279 237 0 41 chr6 109180221 109180318 -73234924 + MER103 DNA DNA 64 156 -10 371 344 13 25 chr6 109180805 109180962 -73234280 - MER5A DNA MER1_type -5 184 30 5246 162 38 30 chr6 109181094 109182582 -73232660 + L1PA16 LINE L1 4667 6155 0 287 181 12 60 chr6 109183291 109183374 -73231868 + MER66A LTR ERV1 1 79 -399 2109 197 10 17 chr6 109183440 109183856 -73231386 + MER66B LTR ERV1 74 486 0 21 0 0 0 chr6 109183959 109183980 -73231262 + AT_rich Low_complexity Low_complexity 1 21 0 979 237 98 18 chr6 109184777 109185266 -73229976 - Charlie2 DNA MER1_type -90 2772 2245 379 291 87 49 chr6 109185279 109185544 -73229698 - Charlie2 DNA MER1_type -2496 366 92 583 200 131 30 chr6 109185688 109186012 -73229230 + LTR37A LTR ERV1 116 423 -3 31 68 0 0 chr6 109186975 109187034 -73228208 + AT_rich Low_complexity Low_complexity 1 59 0 184 341 24 24 chr6 109187484 109187569 -73227673 - L2 LINE L2 -2 3311 3227 4746 171 4 11 chr6 109188937 109189736 -73225506 - MER54B LTR ERVL 0 793 1 271 251 28 28 chr6 109189826 109190005 -73225237 + (TA)n Simple_repeat Simple_repeat 1 179 0 440 246 39 8 chr6 109190005 109190135 -73225107 + L1M4b LINE L1 100 233 -6626 * 1076 222 10 0 chr6 109190127 109190330 -73224912 + L1M4b LINE L1 648 852 -6007 1119 53 0 0 chr6 109190475 109190607 -73224635 + AluY SINE Alu 1 132 -179 252 184 0 0 chr6 109190607 109190656 -73224586 + A-rich Low_complexity Low_complexity 1 49 0 1384 92 0 0 chr6 109190657 109190841 -73224401 + AluY SINE Alu 128 311 0 1690 269 43 41 chr6 109190858 109191774 -73223468 + L1M4b LINE L1 2707 3640 -3317 436 350 71 45 chr6 109191789 109192294 -73222948 + L1MB8 LINE L1 10 527 -6322 315 335 30 40 chr6 109192527 109192828 -73222414 + L1MB8 LINE L1 721 1018 -5831 710 307 87 11 chr6 109192937 109193374 -73221868 + L1MB8 LINE L1 998 1568 -5280 * 2529 239 53 28 chr6 109193366 109194394 -73220848 + L1PB4 LINE L1 702 1828 -4375 8557 199 33 34 chr6 109194408 109195843 -73219399 + L1PB4 LINE L1 3071 4507 -1706 270 0 0 0 chr6 109195843 109195873 -73219369 + (CA)n Simple_repeat Simple_repeat 1 30 0 8557 199 33 34 chr6 109195873 109196623 -73218619 + L1PB4 LINE L1 4507 5247 -966 269 26 0 26 chr6 109196623 109196662 -73218580 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 8557 199 33 34 chr6 109196662 109197264 -73217978 + L1PB4 LINE L1 5247 5848 -365 281 241 37 0 chr6 109197264 109197372 -73217870 + (TA)n Simple_repeat Simple_repeat 1 112 0 2164 137 11 3 chr6 109197373 109197738 -73217504 + L1PB4 LINE L1 5842 6209 -4 343 244 170 7 chr6 109197749 109197884 -73217358 + L1M4 LINE L1 4517 4673 -1473 1178 268 91 7 chr6 109197923 109198506 -73216736 + L1MB8 LINE L1 3519 4150 -2698 360 0 0 0 chr6 109198510 109198550 -73216692 + (GA)n Simple_repeat Simple_repeat 1 40 0 652 223 0 36 chr6 109198616 109198755 -73216487 - FLAM_C SINE Alu -7 136 3 5539 244 48 15 chr6 109198777 109201259 -73213983 + L1MB8 LINE L1 4204 6775 -105 2087 77 0 0 chr6 109201259 109201520 -73213722 + AluY SINE Alu 35 295 -16 5539 244 48 15 chr6 109201520 109201625 -73213617 + L1MB8 LINE L1 6775 6875 -5 2732 185 32 49 chr6 109201632 109202212 -73213030 + L1MD1 LINE L1 5593 6162 -80 2347 118 19 25 chr6 109202212 109202578 -73212664 - THE1B LTR MaLR 0 364 1 2732 185 32 49 chr6 109202578 109202650 -73212592 + L1MD1 LINE L1 6162 6234 -8 192 185 0 0 chr6 109203391 109203445 -73211797 + A-rich Low_complexity Low_complexity 1 54 0 4209 68 25 5 chr6 109204185 109204756 -73210486 + L1PA7 LINE L1 5571 6152 -2 742 171 0 50 chr6 109205352 109205492 -73209750 + FLAM_C SINE Alu 1 133 0 410 180 20 7 chr6 109205532 109205682 -73209560 + (TA)n Simple_repeat Simple_repeat 2 153 0 1425 217 32 58 chr6 109206943 109207329 -73207913 + MER67C LTR ERV1 1 401 -243 875 189 38 6 chr6 109207628 109207787 -73207455 - AluJb SINE Alu -62 250 87 226 280 25 59 chr6 109208257 109208375 -73206867 - L2 LINE L2 -88 3225 3112 343 354 17 27 chr6 109208558 109208798 -73206444 - L2 LINE L2 -719 2595 2314 6980 186 56 101 chr6 109208798 109209822 -73205420 - Charlie5 DNA MER1_type -158 2466 1397 1694 161 156 11 chr6 109209822 109210194 -73205048 - MSTA LTR MaLR -2 426 1 8987 142 21 39 chr6 109210194 109211800 -73203442 - MSTA-int LTR MaLR 0 1580 3 6980 186 56 101 chr6 109211800 109213327 -73201915 - Charlie5 DNA MER1_type -1225 1399 30 23 0 0 0 chr6 109213641 109213664 -73201578 + AT_rich Low_complexity Low_complexity 1 23 0 228 176 0 20 chr6 109214428 109214479 -73200763 + L1MC1 LINE L1 6284 6333 0 21 0 0 0 chr6 109215452 109215473 -73199769 + AT_rich Low_complexity Low_complexity 1 21 0 435 146 19 68 chr6 109219960 109220063 -73195179 + MIR SINE MIR 97 194 -68 206 207 17 0 chr6 109220104 109220162 -73195080 + GA-rich Low_complexity Low_complexity 2 60 0 195 204 0 0 chr6 109220774 109220818 -73194424 + GA-rich Low_complexity Low_complexity 5 48 0 24 32 0 0 chr6 109223426 109223457 -73191785 + AT_rich Low_complexity Low_complexity 1 31 0 1529 199 0 3 chr6 109223753 109224067 -73191175 - AluJb SINE Alu 0 313 1 24 0 0 0 chr6 109224320 109224344 -73190898 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr6 109224392 109224428 -73190814 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr6 109224606 109224655 -73190587 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr6 109226268 109226296 -73188946 + AT_rich Low_complexity Low_complexity 1 28 0 203 59 0 29 chr6 109227159 109227193 -73188049 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 21 0 0 0 chr6 109227622 109227643 -73187599 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr6 109227907 109227931 -73187311 + (A)n Simple_repeat Simple_repeat 1 24 0 30 69 0 0 chr6 109228067 109228125 -73187117 + AT_rich Low_complexity Low_complexity 1 58 0 2088 110 3 16 chr6 109230179 109230488 -73184754 - AluSx SINE Alu -7 305 1 196 349 0 23 chr6 109231422 109231508 -73183734 + MIR SINE MIR 114 197 -65 778 94 0 16 chr6 109231944 109232072 -73183170 + (GGAA)n Simple_repeat Simple_repeat 4 129 0 183 320 97 88 chr6 109232927 109233258 -73181984 + L2 LINE L2 2422 2755 -559 287 245 71 0 chr6 109233813 109233911 -73181331 + MLT1J LTR MaLR 378 482 -29 21 36 0 0 chr6 109235632 109235660 -73179582 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr6 109237930 109237972 -73177270 + AT_rich Low_complexity Low_complexity 1 42 0 501 58 0 0 chr6 109242014 109242083 -73173159 + (TG)n Simple_repeat Simple_repeat 2 70 0 225 261 171 0 chr6 109242304 109242392 -73172850 + MIR3 SINE MIR 83 185 -23 22 35 0 0 chr6 109242714 109242743 -73172499 + AT_rich Low_complexity Low_complexity 1 29 0 278 50 25 0 chr6 109243255 109243295 -73171947 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr6 109243439 109243467 -73171775 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr6 109244207 109244241 -73171001 + AT_rich Low_complexity Low_complexity 1 34 0 207 315 37 0 chr6 109244321 109244429 -73170813 + (TA)n Simple_repeat Simple_repeat 2 113 0 183 80 0 0 chr6 109244730 109244755 -73170487 + (A)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr6 109244967 109244993 -73170249 + AT_rich Low_complexity Low_complexity 1 26 0 269 321 57 0 chr6 109245133 109245239 -73170003 + MIR SINE MIR 38 149 -59 21 0 0 0 chr6 109245480 109245501 -73169741 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 109245583 109245604 -73169638 + AT_rich Low_complexity Low_complexity 1 21 0 449 71 24 94 chr6 109245788 109245873 -73169369 + MADE1 DNA Mariner 1 79 -1 26 74 0 0 chr6 109245929 109245983 -73169259 + AT_rich Low_complexity Low_complexity 1 54 0 186 395 70 0 chr6 109246617 109246703 -73168539 + MIR SINE MIR 55 146 -62 228 35 0 0 chr6 109247731 109247760 -73167482 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 78 0 0 chr6 109249628 109249679 -73165563 + AT_rich Low_complexity Low_complexity 1 51 0 485 243 74 0 chr6 109250065 109250213 -73165029 + MER103 DNA DNA 5 163 -3 333 328 81 62 chr6 109250900 109251159 -73164083 + MLT1J LTR MaLR 108 371 -140 755 266 35 5 chr6 109251870 109252073 -73163169 - MER63A DNA MER1_type -1 209 1 27 0 0 0 chr6 109253528 109253555 -73161687 + AT_rich Low_complexity Low_complexity 1 27 0 2052 61 4 47 chr6 109253666 109253944 -73161298 - AluSp SINE Alu -47 266 1 206 121 0 0 chr6 109255010 109255043 -73160199 + (A)n Simple_repeat Simple_repeat 1 33 0 25 51 0 0 chr6 109256503 109256542 -73158700 + AT_rich Low_complexity Low_complexity 1 39 0 205 211 0 0 chr6 109256872 109256910 -73158332 + A-rich Low_complexity Low_complexity 1 38 0 417 70 0 0 chr6 109257072 109257129 -73158113 + (TG)n Simple_repeat Simple_repeat 2 58 0 30 0 0 0 chr6 109258048 109258078 -73157164 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 109259446 109259468 -73155774 + AT_rich Low_complexity Low_complexity 1 22 0 29 84 0 0 chr6 109259965 109260036 -73155206 + AT_rich Low_complexity Low_complexity 1 71 0 203 360 35 0 chr6 109260302 109260388 -73154854 + L2 LINE L2 3225 3313 0 2331 90 0 3 chr6 109262589 109262890 -73152352 - AluSc SINE Alu -9 300 1 258 32 0 0 chr6 109263122 109263153 -73152089 + (TA)n Simple_repeat Simple_repeat 1 31 0 28 0 0 0 chr6 109263498 109263526 -73151716 + AT_rich Low_complexity Low_complexity 1 28 0 698 185 15 8 chr6 109263544 109263674 -73151568 - AluJo SINE Alu -176 136 6 237 132 0 0 chr6 109264506 109264544 -73150698 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 29 47 0 0 chr6 109264824 109264867 -73150375 + AT_rich Low_complexity Low_complexity 1 43 0 369 365 66 5 chr6 109265686 109265897 -73149345 - MIR SINE MIR 0 262 39 2027 147 85 20 chr6 109266190 109266592 -73148650 + MSTA LTR MaLR 1 428 0 833 143 37 0 chr6 109266791 109266952 -73148290 - L1MA8 LINE L1 0 6291 6125 714 165 13 122 chr6 109266954 109266999 -73148243 + L1MA8 LINE L1 5924 5972 -319 2156 101 3 16 chr6 109266999 109267306 -73147936 + AluSc SINE Alu 1 303 -6 714 165 13 122 chr6 109267306 109267490 -73147752 + L1MA8 LINE L1 5972 6128 -163 26 0 0 0 chr6 109267614 109267640 -73147602 + AT_rich Low_complexity Low_complexity 1 26 0 2744 147 23 60 chr6 109267787 109268386 -73146856 + L1MC2 LINE L1 5762 6338 -6 209 338 53 15 chr6 109268507 109268640 -73146602 - MIR SINE MIR 0 262 125 230 328 0 0 chr6 109269271 109269332 -73145910 + L2 LINE L2 3204 3264 -8 921 304 105 40 chr6 109270042 109270754 -73144488 + L2 LINE L2 2558 3312 -1 320 0 25 0 chr6 109270797 109270837 -73144405 + (TTA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr6 109271100 109271122 -73144120 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 109271313 109271335 -73143907 + AT_rich Low_complexity Low_complexity 1 22 0 1949 153 42 28 chr6 109271886 109272245 -73142997 + THE1B LTR MaLR 1 364 0 1031 202 0 29 chr6 109272246 109272478 -73142764 - AluJo SINE Alu 0 310 85 22 0 0 0 chr6 109273234 109273256 -73141986 + AT_rich Low_complexity Low_complexity 1 22 0 522 242 89 8 chr6 109273837 109273961 -73141281 - HERVL40 LTR ERVL -2168 3362 3229 354 296 0 11 chr6 109274111 109274199 -73141043 - HERVL40 LTR ERVL -2508 3022 2936 224 396 92 15 chr6 109274530 109274856 -73140386 - L2 LINE L2 -2493 821 471 827 344 33 13 chr6 109274861 109275253 -73139989 + MLT1I LTR MaLR 10 409 0 556 326 88 0 chr6 109275966 109275994 -73139248 - MIR SINE MIR 0 262 238 558 0 0 0 chr6 109275994 109276056 -73139186 + (TATAA)n Simple_repeat Simple_repeat 3 64 0 556 326 88 0 chr6 109276056 109276242 -73139000 - MIR SINE MIR -24 238 29 292 260 24 31 chr6 109276521 109276556 -73138686 + (CATATA)n Simple_repeat Simple_repeat 6 40 -91 1698 169 48 12 chr6 109276556 109276887 -73138355 + MER2 DNA MER2_type 2 344 0 292 260 24 31 chr6 109276887 109276978 -73138264 + (CATATA)n Simple_repeat Simple_repeat 40 131 0 318 26 0 0 chr6 109277607 109277646 -73137596 + (TG)n Simple_repeat Simple_repeat 2 40 0 242 181 97 14 chr6 109277881 109277953 -73137289 + MER116 DNA Mariner 3 80 0 264 77 0 0 chr6 109278094 109278133 -73137109 + (CA)n Simple_repeat Simple_repeat 2 40 0 10608 42 0 2 chr6 109278955 109281028 -73134214 + L1PA5 LINE L1 4077 6149 -5 2394 134 11 3 chr6 109281525 109281897 -73133345 + THE1C LTR MaLR 1 375 0 4155 156 16 15 chr6 109282013 109282751 -73132491 + L1PA16 LINE L1 5425 6163 -3 25 0 0 0 chr6 109282768 109282793 -73132449 + AT_rich Low_complexity Low_complexity 1 25 0 253 323 63 44 chr6 109283532 109283690 -73131552 - L2 LINE L2 -3 3310 3150 279 314 57 0 chr6 109283778 109283848 -73131394 - L2 LINE L2 0 3272 3199 1345 193 4 0 chr6 109284127 109284360 -73130882 + LTR45 LTR ERV1 1 234 -291 463 189 105 105 chr6 109284358 109284501 -73130741 + LTR45 LTR ERV1 381 523 -2 * 44 35 0 0 chr6 109286338 109286396 -73128846 + AT_rich Low_complexity Low_complexity 1 58 0 385 304 142 26 chr6 109287015 109287191 -73128051 + L1M4 LINE L1 4993 5147 -999 261 57 0 0 chr6 109287191 109287226 -73128016 + (CA)n Simple_repeat Simple_repeat 2 36 0 385 304 142 26 chr6 109287226 109287352 -73127890 + L1M4 LINE L1 5147 5330 -816 270 257 0 1 chr6 109287499 109287608 -73127634 + L1M1 LINE L1 5493 5597 -725 475 92 1 26 chr6 109287681 109287759 -73127483 - L1MA1 LINE L1 -22 6281 6204 2204 121 0 6 chr6 109288208 109288522 -73126720 - AluSx SINE Alu 0 312 1 219 88 0 0 chr6 109289456 109289490 -73125752 + (TAA)n Simple_repeat Simple_repeat 3 36 0 309 244 70 77 chr6 109289925 109289962 -73125280 - MIR SINE MIR -43 219 183 2801 10 0 0 chr6 109289962 109290271 -73124971 - AluYb8 SINE Alu -9 309 1 309 244 70 77 chr6 109290271 109290389 -73124853 - MIR SINE MIR -79 183 65 958 243 99 11 chr6 109291403 109291521 -73123721 + AluJo SINE Alu 2 108 -194 180 0 0 0 chr6 109291521 109291541 -73123701 + (TAA)n Simple_repeat Simple_repeat 2 21 0 958 243 99 11 chr6 109291541 109291685 -73123557 + AluJo SINE Alu 108 287 -15 345 263 0 5 chr6 109291787 109291889 -73123353 + MER34 LTR ERV1 1 136 -449 2408 166 49 23 chr6 109291889 109292359 -73122883 + LTR29 LTR ERV1 137 618 -4 260 346 126 22 chr6 109292902 109293084 -73122158 - MIR SINE MIR -13 249 49 3090 160 88 60 chr6 109293239 109293920 -73121322 + MER72 LTR ERV1 1 700 -22 1126 183 37 29 chr6 109294150 109294423 -73120819 + MER67C LTR ERV1 10 284 -426 198 295 74 21 chr6 109295291 109295386 -73119856 - MIR SINE MIR -17 245 146 2372 77 3 10 chr6 109295438 109295750 -73119492 + AluY SINE Alu 1 310 -1 399 334 73 58 chr6 109295792 109296343 -73118899 - L2 LINE L2 0 3313 2761 712 348 89 51 chr6 109296736 109297535 -73117707 + L2 LINE L2 223 1051 -2263 450 292 75 57 chr6 109297575 109297907 -73117335 + L2 LINE L2 2147 2484 -830 840 343 85 28 chr6 109297965 109298572 -73116670 + L2 LINE L2 2287 2985 -328 207 0 0 0 chr6 109298572 109298595 -73116647 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 840 343 85 28 chr6 109298595 109298943 -73116299 + L2 LINE L2 2985 3312 -1 521 347 181 11 chr6 109299033 109299382 -73115860 + L2 LINE L2 2902 3309 -4 1881 148 7 0 chr6 109299567 109299850 -73115392 + AluSx SINE Alu 1 285 -27 5362 169 14 4 chr6 109299864 109300806 -73114436 - L1MC1 LINE L1 -6 6327 5377 256 200 20 0 chr6 109300851 109300901 -73114341 - MIR SINE MIR -147 115 65 207 0 0 0 chr6 109301924 109301947 -73113295 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 564 241 53 72 chr6 109301998 109302205 -73113037 - MIR SINE MIR 0 262 60 21 0 0 0 chr6 109302644 109302665 -73112577 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr6 109303531 109303573 -73111669 + AT_rich Low_complexity Low_complexity 1 42 0 325 231 8 142 chr6 109303776 109303910 -73111332 - L2 LINE L2 -14 3299 3184 234 0 0 0 chr6 109304287 109304313 -73110929 + (A)n Simple_repeat Simple_repeat 1 26 0 236 196 0 0 chr6 109305594 109305640 -73109602 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 545 225 72 0 chr6 109305685 109305796 -73109446 - MER58B DNA MER1_type -1 340 222 2732 260 56 41 chr6 109305796 109306870 -73108372 + L1MB5 LINE L1 58 1147 -5395 2316 267 36 6 chr6 109306866 109307705 -73107537 + L1MB5 LINE L1 3382 4245 -2399 * 4100 214 10 23 chr6 109307708 109308817 -73106425 + L1MB5 LINE L1 5390 6483 -189 1384 193 40 7 chr6 109308817 109309124 -73106118 + AluJo SINE Alu 1 316 0 4100 214 10 23 chr6 109309124 109309304 -73105938 + L1MB5 LINE L1 6483 6664 -8 296 379 35 30 chr6 109310080 109310249 -73104993 - L2 LINE L2 -2 3270 3101 194 188 0 0 chr6 109310265 109310297 -73104945 + MER5B DNA MER1_type 4 35 -143 315 216 8 164 chr6 109310331 109310465 -73104777 - MER5B DNA MER1_type -46 132 20 674 243 12 12 chr6 109310467 109310640 -73104602 + MER45A DNA AcHobo 3 175 -3 182 338 27 14 chr6 109311561 109311635 -73103607 - L2 LINE L2 -86 3186 3112 23 0 0 0 chr6 109312045 109312068 -73103174 + AT_rich Low_complexity Low_complexity 1 23 0 259 288 27 14 chr6 109312118 109312191 -73103051 - MIR SINE MIR -154 108 35 2059 109 7 3 chr6 109312463 109312757 -73102485 + AluSq SINE Alu 1 295 -18 291 361 143 37 chr6 109314084 109314835 -73100407 + L2 LINE L2 2174 3002 -270 207 0 0 0 chr6 109315057 109315080 -73100162 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2167 108 0 3 chr6 109315176 109315472 -73099770 + AluSq SINE Alu 3 297 -16 1417 204 27 62 chr6 109315750 109316123 -73099119 - MER39 LTR ERV1 -18 689 330 1310 193 18 4 chr6 109316567 109316847 -73098395 - L1MA9 LINE L1 0 6312 6029 251 215 194 21 chr6 109316854 109316947 -73098295 - MER5B DNA MER1_type -24 154 46 1027 245 113 98 chr6 109317026 109317132 -73098110 + HAL1 LINE L1 1257 1360 -1147 873 176 73 94 chr6 109317132 109317163 -73098079 - MER33 DNA MER1_type -2261 324 294 2321 103 0 0 chr6 109317163 109317464 -73097778 + AluSg SINE Alu 1 301 -9 366 91 0 0 chr6 109317464 109317519 -73097723 + (TA)n Simple_repeat Simple_repeat 2 56 0 873 176 73 94 chr6 109317519 109317816 -73097426 - MER33 DNA MER1_type -2289 296 2 1027 245 113 98 chr6 109317816 109318362 -73096880 + HAL1 LINE L1 1360 1924 -583 2133 110 20 0 chr6 109318362 109318662 -73096580 + AluSx SINE Alu 1 306 -6 1027 245 113 98 chr6 109318662 109318771 -73096471 + HAL1 LINE L1 1924 2030 -477 1050 222 8 25 chr6 109319110 109319353 -73095889 - AluJb SINE Alu -16 296 58 327 339 84 45 chr6 109319950 109320557 -73094685 + L1M4 LINE L1 3350 3980 -2166 1867 114 0 15 chr6 109320628 109320899 -73094343 + AluSg1 SINE Alu 35 301 -8 22 0 0 0 chr6 109322146 109322168 -73093074 + AT_rich Low_complexity Low_complexity 1 22 0 1326 163 27 31 chr6 109322988 109323282 -73091960 - L1PA16 LINE L1 -2 6164 5872 11204 221 41 12 chr6 109323282 109324379 -73090863 - L1PA16 LINE L1 -545 5621 4557 186 43 0 0 chr6 109324379 109324402 -73090840 + (TTG)n Simple_repeat Simple_repeat 2 24 0 11204 221 41 12 chr6 109324402 109326616 -73088626 - L1PA16 LINE L1 -1609 4557 2222 192 40 0 0 chr6 109326629 109326654 -73088588 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1965 99 6 53 chr6 109329682 109329942 -73085300 + L1PB1 LINE L1 5844 6088 -63 1926 99 12 59 chr6 109329942 109330264 -73084978 + AluSx SINE Alu 1 307 -5 1965 99 6 53 chr6 109330264 109330326 -73084916 + L1PB1 LINE L1 6088 6151 0 31 58 0 0 chr6 109330731 109330783 -73084459 + AT_rich Low_complexity Low_complexity 1 52 0 25 51 0 0 chr6 109331369 109331408 -73083834 + AT_rich Low_complexity Low_complexity 1 39 0 372 327 0 0 chr6 109331418 109331531 -73083711 + MIR SINE MIR 150 262 0 387 290 54 32 chr6 109331595 109331781 -73083461 + L2 LINE L2 2870 3059 -213 369 43 0 0 chr6 109331872 109331919 -73083323 + (TG)n Simple_repeat Simple_repeat 2 48 0 224 326 158 0 chr6 109331950 109332045 -73083197 + L2 LINE L2 3199 3308 -5 434 362 0 17 chr6 109332652 109332829 -73082413 - MER5B DNA MER1_type -3 175 2 254 281 0 16 chr6 109333067 109333131 -73082111 - L2 LINE L2 -5 3308 3246 2052 106 7 0 chr6 109333385 109333660 -73081582 + AluSc SINE Alu 1 277 -32 207 100 0 0 chr6 109333660 109333690 -73081552 + (GAA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr6 109334148 109334169 -73081073 + AT_rich Low_complexity Low_complexity 1 21 0 212 100 25 0 chr6 109334244 109334284 -73080958 + (TTG)n Simple_repeat Simple_repeat 2 42 0 23 54 0 0 chr6 109335183 109335220 -73080022 + AT_rich Low_complexity Low_complexity 1 37 0 258 373 73 11 chr6 109337147 109337324 -73077918 + MER91A DNA MER1_type 9 196 0 39 0 0 0 chr6 109337390 109337429 -73077813 + AT_rich Low_complexity Low_complexity 1 39 0 2013 95 0 37 chr6 109337432 109337727 -73077515 - AluSc SINE Alu -25 284 1 277 291 35 47 chr6 109338788 109338960 -73076282 - L1ME4a LINE L1 0 6121 5952 480 305 62 11 chr6 109338979 109339156 -73076086 + MIR SINE MIR 6 191 -71 328 314 29 7 chr6 109339374 109339511 -73075731 - L1ME4a LINE L1 -419 5702 5563 2002 138 7 3 chr6 109340149 109340445 -73074797 - AluSx SINE Alu -15 297 1 258 105 0 0 chr6 109340953 109340991 -73074251 + (TG)n Simple_repeat Simple_repeat 1 38 0 181 198 45 27 chr6 109341000 109341111 -73074131 + (TATATG)n Simple_repeat Simple_repeat 1 113 0 22 80 0 0 chr6 109341776 109341826 -73073416 + AT_rich Low_complexity Low_complexity 1 50 0 30 27 0 0 chr6 109342078 109342115 -73073127 + AT_rich Low_complexity Low_complexity 1 37 0 201 204 20 0 chr6 109342245 109342294 -73072948 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 29 47 0 0 chr6 109342584 109342627 -73072615 + AT_rich Low_complexity Low_complexity 1 43 0 37 62 0 0 chr6 109345088 109345153 -73070089 + AT_rich Low_complexity Low_complexity 1 65 0 1716 232 17 6 chr6 109346246 109346697 -73068545 + MER89 LTR ERV1 5 559 0 450 348 17 96 chr6 109347075 109347429 -73067813 - L2 LINE L2 0 3272 2947 554 328 81 15 chr6 109347553 109347812 -73067430 - L2 LINE L2 -518 2796 2521 209 217 19 113 chr6 109348386 109348492 -73066750 + L2 LINE L2 3120 3215 -98 246 373 36 0 chr6 109348809 109348919 -73066323 - MIR SINE MIR -67 141 28 195 293 69 0 chr6 109348914 109348972 -73066270 + L2 LINE L2 3137 3198 -74 * 21 0 0 0 chr6 109350167 109350188 -73065054 + AT_rich Low_complexity Low_complexity 1 21 0 270 290 93 9 chr6 109350767 109350874 -73064368 + L2 LINE L2 1631 1746 -1568 22 0 0 0 chr6 109351908 109351930 -73063312 + AT_rich Low_complexity Low_complexity 1 22 0 243 204 0 0 chr6 109353703 109353757 -73061485 + (TA)n Simple_repeat Simple_repeat 2 55 0 261 0 0 0 chr6 109354820 109354849 -73060393 + (CA)n Simple_repeat Simple_repeat 2 30 0 334 274 122 51 chr6 109355955 109356291 -73058951 + L1ME4a LINE L1 5593 5952 -169 275 152 90 14 chr6 109356302 109356447 -73058795 + (TA)n Simple_repeat Simple_repeat 1 156 0 216 235 44 15 chr6 109356473 109356609 -73058633 + (TA)n Simple_repeat Simple_repeat 2 141 0 250 336 37 30 chr6 109356614 109356748 -73058494 - MIR SINE MIR -65 197 63 24 67 0 0 chr6 109357238 109357283 -73057959 + AT_rich Low_complexity Low_complexity 1 45 0 613 222 8 8 chr6 109357283 109357409 -73057833 + FLAM_A SINE Alu 1 126 -7 342 316 139 19 chr6 109357814 109358029 -73057213 - MIR SINE MIR -2 260 20 3856 218 117 28 chr6 109358250 109358960 -73056282 + L1MA4A LINE L1 817 1647 -5202 2037 140 0 3 chr6 109358960 109359260 -73055982 + AluSx SINE Alu 1 299 -13 3856 218 117 28 chr6 109359260 109359565 -73055677 + L1MA4A LINE L1 1647 1923 -4926 720 114 190 0 chr6 109359563 109359721 -73055521 + L1MA4A LINE L1 2717 2904 -3945 * 252 132 0 0 chr6 109359727 109359765 -73055477 + L1MDa LINE L1 2606 2643 -3897 43482 42 2 1 chr6 109359765 109365917 -73049325 + L1PA3 LINE L1 2 6154 -1 12952 195 28 25 chr6 109365919 109369215 -73046027 + L1MA4A LINE L1 2936 6247 -743 1637 131 114 43 chr6 109369215 109369565 -73045677 - THE1C LTR MaLR 0 375 1 1509 93 4 13 chr6 109369565 109369791 -73045451 - THE1C-int LTR MaLR 0 1580 1357 4425 132 10 69 chr6 109369797 109370620 -73044622 - THE1C-int LTR MaLR -803 777 4 1790 158 29 50 chr6 109370625 109370969 -73044273 - THE1C LTR MaLR -2 373 36 2390 63 7 7 chr6 109370969 109371269 -73043973 + AluY SINE Alu 1 300 -11 1790 158 29 50 chr6 109371269 109371305 -73043937 - THE1C LTR MaLR -339 36 1 4201 133 5 58 chr6 109371306 109372109 -73043133 + L1MA4A LINE L1 6244 7003 -2 668 244 36 18 chr6 109372109 109372277 -73042965 + MLT1A1 LTR MaLR 143 313 -52 27 0 0 0 chr6 109372418 109372445 -73042797 + AT_rich Low_complexity Low_complexity 1 27 0 259 200 0 18 chr6 109372458 109372513 -73042729 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 267 65 26 117 chr6 109372513 109372590 -73042652 + (TATG)n Simple_repeat Simple_repeat 2 71 0 208 267 0 30 chr6 109372987 109373088 -73042154 + A-rich Low_complexity Low_complexity 1 98 0 228 279 0 16 chr6 109373431 109373492 -73041750 + GA-rich Low_complexity Low_complexity 1 60 0 37 52 0 0 chr6 109373498 109373556 -73041686 + AT_rich Low_complexity Low_complexity 1 58 0 607 268 56 35 chr6 109373563 109373794 -73041448 - MIR SINE MIR -16 246 11 292 276 26 0 chr6 109374237 109374353 -73040889 + (TA)n Simple_repeat Simple_repeat 1 119 0 22 56 0 0 chr6 109375082 109375118 -73040124 + AT_rich Low_complexity Low_complexity 1 36 0 225 211 19 0 chr6 109377053 109377105 -73038137 + MIR SINE MIR 182 234 -28 370 282 18 36 chr6 109377526 109377636 -73037606 + MIR3 SINE MIR 85 192 -16 388 224 0 0 chr6 109378218 109378285 -73036957 + AluY SINE Alu 215 281 -20 240 181 36 0 chr6 109378300 109378383 -73036859 + (TA)n Simple_repeat Simple_repeat 2 87 0 266 146 0 18 chr6 109378564 109378619 -73036623 + (TA)n Simple_repeat Simple_repeat 1 54 0 314 270 98 7 chr6 109380274 109380419 -73034823 + MIR SINE MIR 44 206 -56 2371 81 0 3 chr6 109380621 109380928 -73034314 - AluSc SINE Alu -3 306 1 356 308 26 0 chr6 109381981 109382098 -73033144 + MLT1K LTR MaLR 376 495 -93 4008 27 2 2 chr6 109382111 109382593 -73032649 + L1PA4 LINE L1 5673 6154 -1 26 0 0 0 chr6 109382593 109382619 -73032623 + AT_rich Low_complexity Low_complexity 1 26 0 312 0 0 0 chr6 109382625 109382662 -73032580 - MER85 DNA T2_type -102 37 1 2275 165 34 29 chr6 109383974 109384417 -73030825 + MER65A LTR ERV1 1 445 0 1918 164 0 3 chr6 109385972 109386277 -73028965 + AluJb SINE Alu 5 308 -4 238 332 107 86 chr6 109388755 109389186 -73026056 - L2 LINE L2 -13 3259 2820 288 323 55 40 chr6 109389226 109389427 -73025815 - L2 LINE L2 -508 2806 2603 385 282 214 4 chr6 109389814 109390080 -73025162 - L2 LINE L2 -979 2335 2014 270 187 0 143 chr6 109390244 109390335 -73024907 - MER45A DNA AcHobo 0 178 101 324 196 77 16 chr6 109391556 109391667 -73023575 + AluJ/FLAM SINE Alu 1 77 -225 1291 173 68 32 chr6 109391690 109391939 -73023303 + AluJo SINE Alu 30 287 -25 240 59 0 0 chr6 109391941 109391975 -73023267 + (CAGAGA)n Simple_repeat Simple_repeat 2 35 0 661 136 23 34 chr6 109391979 109392156 -73023086 + GA-rich Low_complexity Low_complexity 4 178 0 597 152 11 43 chr6 109392171 109392355 -73022887 + GA-rich Low_complexity Low_complexity 1 178 0 258 199 0 32 chr6 109393362 109393548 -73021694 + (TA)n Simple_repeat Simple_repeat 1 180 0 27 0 0 0 chr6 109393548 109393575 -73021667 + AT_rich Low_complexity Low_complexity 1 27 0 298 138 50 25 chr6 109393575 109393735 -73021507 + (TAAA)n Simple_repeat Simple_repeat 3 166 0 271 176 27 0 chr6 109393743 109393817 -73021425 + (TA)n Simple_repeat Simple_repeat 1 76 0 2621 16 39 0 chr6 109393958 109394264 -73020978 + AluYb8 SINE Alu 1 318 0 24 32 0 0 chr6 109394318 109394349 -73020893 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr6 109394407 109394446 -73020796 + AT_rich Low_complexity Low_complexity 1 39 0 204 319 64 11 chr6 109394516 109394610 -73020632 + MIR SINE MIR 56 154 -108 21 0 0 0 chr6 109394923 109394944 -73020298 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 109395875 109395896 -73019346 + AT_rich Low_complexity Low_complexity 1 21 0 1585 191 21 3 chr6 109395896 109396179 -73019063 - AluJb SINE Alu -22 290 3 340 319 13 51 chr6 109396472 109396629 -73018613 + MIR SINE MIR 56 206 -56 2484 67 0 3 chr6 109398660 109398972 -73016270 + AluY SINE Alu 1 311 0 412 380 64 49 chr6 109399121 109399652 -73015590 + L2 LINE L2 2734 3271 -1 28 29 0 0 chr6 109400218 109400253 -73014989 + AT_rich Low_complexity Low_complexity 1 35 0 2365 44 41 3 chr6 109400819 109401114 -73014128 - AluYa5 SINE Alu -5 306 1 2091 233 35 61 chr6 109401483 109402443 -73012799 + L1MC5 LINE L1 6482 7419 -542 756 225 55 60 chr6 109402446 109402863 -73012379 + L1MC5 LINE L1 7517 7931 -30 776 173 0 8 chr6 109402888 109403015 -73012227 + FLAM_C SINE Alu 1 126 -17 544 296 63 27 chr6 109403788 109404011 -73011231 + MIR SINE MIR 2 232 -30 2030 144 0 6 chr6 109404013 109404326 -73010916 + AluSx SINE Alu 2 312 0 202 321 24 36 chr6 109404604 109404688 -73010554 + MIR SINE MIR 45 127 -81 1992 151 0 0 chr6 109404718 109405010 -73010232 + AluSx SINE Alu 1 292 -20 23 68 0 0 chr6 109405264 109405308 -73009934 + AT_rich Low_complexity Low_complexity 1 44 0 276 375 109 8 chr6 109405439 109405567 -73009675 - L2 LINE L2 -16 3256 3116 331 155 42 0 chr6 109405592 109405663 -73009579 + MER116 DNA Mariner 2 75 -5 22 0 0 0 chr6 109405780 109405802 -73009440 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 109407121 109407143 -73008099 + AT_rich Low_complexity Low_complexity 1 22 0 223 318 0 0 chr6 109407299 109407365 -73007877 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2097 125 3 0 chr6 109407500 109407796 -73007446 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr6 109408591 109408613 -73006629 + AT_rich Low_complexity Low_complexity 1 22 0 2588 118 4 55 chr6 109409173 109409246 -73005996 + L1PB1 LINE L1 5708 5783 -368 2404 98 0 6 chr6 109409246 109409561 -73005681 + AluSp SINE Alu 1 313 0 324 0 0 0 chr6 109409567 109409603 -73005639 + (TA)n Simple_repeat Simple_repeat 2 37 0 222 37 0 0 chr6 109409608 109409635 -73005607 + (CA)n Simple_repeat Simple_repeat 1 27 0 2588 118 4 55 chr6 109409635 109409885 -73005357 + L1PB1 LINE L1 5792 6018 -133 2297 89 0 0 chr6 109409885 109410178 -73005064 + AluY SINE Alu 1 293 -18 2588 118 4 55 chr6 109410178 109410297 -73004945 + L1PB1 LINE L1 6018 6141 -10 21 0 0 0 chr6 109410369 109410390 -73004852 + AT_rich Low_complexity Low_complexity 1 21 0 1248 261 18 18 chr6 109410804 109411130 -73004112 + LTR31 LTR ERV1 75 400 -219 2893 143 18 11 chr6 109411140 109411737 -73003505 + MER4E LTR ERV1 3 766 0 902 214 10 5 chr6 109411740 109411936 -73003306 + LTR31 LTR ERV1 408 604 -15 321 311 68 10 chr6 109412105 109412208 -73003034 + MIR SINE MIR 1 109 -153 249 206 76 54 chr6 109412679 109412771 -73002471 + MER34 LTR ERV1 449 542 0 217 283 33 0 chr6 109412774 109412834 -73002408 + L3 LINE CR1 410 471 -1106 329 309 12 0 chr6 109412874 109412955 -73002287 + MER5B DNA MER1_type 3 84 -94 2050 169 52 7 chr6 109413139 109413546 -73001696 + MSTB LTR MaLR 1 425 -1 353 301 128 4 chr6 109413727 109413953 -73001289 - MIR SINE MIR 0 262 9 316 204 57 57 chr6 109414122 109414210 -73001032 + MER106A DNA MER1_type 134 221 -15 229 343 119 28 chr6 109414221 109414364 -73000878 + L3 LINE CR1 1011 1166 -411 347 240 58 10 chr6 109414588 109414692 -73000550 - MIR SINE MIR -80 128 20 235 256 39 90 chr6 109415175 109415295 -72999947 + L2 LINE L2 3076 3188 -125 697 199 233 0 chr6 109415295 109415471 -72999771 + MER20 DNA MER1_type 3 219 0 235 256 39 90 chr6 109415471 109415506 -72999736 + L2 LINE L2 3188 3223 -90 225 94 0 0 chr6 109415523 109415555 -72999687 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 2064 140 28 30 chr6 109416460 109416824 -72998418 + THE1B LTR MaLR 1 363 -1 11276 94 20 3 chr6 109416825 109418379 -72996863 + THE1B-int LTR MaLR 1 1580 0 2116 152 19 30 chr6 109418379 109418747 -72996495 + THE1B LTR MaLR 1 364 0 198 314 128 67 chr6 109418993 109419455 -72995787 + L2 LINE L2 2331 2820 -494 1260 244 126 34 chr6 109419505 109419981 -72995261 + MLT2B1 LTR ERVL 1 520 0 1863 229 35 62 chr6 109419985 109420644 -72994598 + MLT1A2-int LTR MaLR 6 739 -632 1847 162 51 3 chr6 109420704 109421037 -72994205 + MLT1A2-int LTR MaLR 1387 1735 0 810 286 12 37 chr6 109421037 109421282 -72993960 + MLT1A2 LTR MaLR 1 239 -135 27 29 0 0 chr6 109421770 109421804 -72993438 + AT_rich Low_complexity Low_complexity 1 34 0 746 213 188 40 chr6 109422187 109422539 -72992703 + LTR37A LTR ERV1 4 407 -19 213 224 0 0 chr6 109424784 109424833 -72990409 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 420 257 83 56 chr6 109425463 109425607 -72989635 - MIR SINE MIR -108 154 7 210 296 157 19 chr6 109425718 109425826 -72989416 + MIR SINE MIR 123 245 -17 26 50 0 0 chr6 109426043 109426083 -72989159 + AT_rich Low_complexity Low_complexity 1 40 0 29 28 0 0 chr6 109426162 109426198 -72989044 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr6 109428121 109428163 -72987079 + AT_rich Low_complexity Low_complexity 1 42 0 2508 146 10 7 chr6 109429516 109429933 -72985309 + L1PA16 LINE L1 5739 6156 -10 473 265 86 0 chr6 109429965 109430082 -72985160 + MER94 DNA DNA 2 128 -6 326 310 30 0 chr6 109430451 109430551 -72984691 + MIR3 SINE MIR 105 207 -1 251 201 92 0 chr6 109432510 109432581 -72982661 - AluJ/FRAM SINE Alu -15 287 220 1471 153 4 20 chr6 109432595 109432843 -72982399 - AluJb SINE Alu -58 254 11 21 0 0 0 chr6 109433019 109433040 -72982202 + AT_rich Low_complexity Low_complexity 1 21 0 181 173 0 39 chr6 109434147 109434199 -72981043 + CT-rich Low_complexity Low_complexity 2 51 0 342 0 0 0 chr6 109434950 109434988 -72980254 + (A)n Simple_repeat Simple_repeat 1 38 0 281 192 64 13 chr6 109435371 109435449 -72979793 + MIR3 SINE MIR 108 189 -19 30 45 0 0 chr6 109435994 109436038 -72979204 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr6 109436113 109436138 -72979104 + AT_rich Low_complexity Low_complexity 1 25 0 216 281 18 0 chr6 109437256 109437313 -72977929 + MIR SINE MIR 91 148 -114 192 77 0 0 chr6 109437351 109437377 -72977865 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1213 57 0 0 chr6 109437377 109437534 -72977708 - L1PA5 LINE L1 -13 6141 5985 23 0 0 0 chr6 109440920 109440943 -72974299 + AT_rich Low_complexity Low_complexity 1 23 0 406 241 263 0 chr6 109441747 109441884 -72973358 - MER5A DNA MER1_type -2 187 15 22 0 0 0 chr6 109442784 109442806 -72972436 + AT_rich Low_complexity Low_complexity 1 22 0 401 281 94 1 chr6 109443711 109443886 -72971356 - MIR SINE MIR -63 145 3 534 210 61 53 chr6 109444753 109445050 -72970192 - MLT1B LTR MaLR -1 389 169 38 39 0 0 chr6 109445050 109445102 -72970140 + AT_rich Low_complexity Low_complexity 1 52 0 808 184 18 12 chr6 109445156 109445319 -72969923 - MLT1B LTR MaLR -226 164 1 240 255 53 11 chr6 109445349 109445443 -72969799 + L1ME LINE L1 5564 5661 -460 26 0 0 0 chr6 109445725 109445751 -72969491 + AT_rich Low_complexity Low_complexity 1 26 0 247 228 0 70 chr6 109446036 109446093 -72969149 + L2 LINE L2 3219 3271 -42 216 418 0 20 chr6 109446148 109446246 -72968996 + L2 LINE L2 3167 3262 -10 340 269 0 21 chr6 109446511 109446604 -72968638 - L1MC4 LINE L1 -1339 6703 6613 211 28 56 0 chr6 109446635 109446671 -72968571 + (TA)n Simple_repeat Simple_repeat 1 38 0 1272 282 76 14 chr6 109447196 109447618 -72967624 + LTR16B LTR ERVL 3 450 -14 24 0 0 0 chr6 109447665 109447689 -72967553 + AT_rich Low_complexity Low_complexity 1 24 0 328 101 56 0 chr6 109449072 109449161 -72966081 + (TA)n Simple_repeat Simple_repeat 2 95 0 21 0 0 0 chr6 109449188 109449209 -72966033 + AT_rich Low_complexity Low_complexity 1 21 0 2383 311 122 18 chr6 109449716 109451010 -72964232 + L2 LINE L2 877 2305 -1009 392 242 20 10 chr6 109451032 109451131 -72964111 - L2 LINE L2 -1 3312 3213 264 283 98 11 chr6 109451103 109451195 -72964047 + L2 LINE L2 2277 2376 -938 * 297 368 146 27 chr6 109451237 109451566 -72963676 + L2 LINE L2 2889 3256 -16 22 0 0 0 chr6 109451645 109451667 -72963575 + AT_rich Low_complexity Low_complexity 1 22 0 332 373 72 12 chr6 109453375 109453573 -72961669 + MIR SINE MIR 1 208 -54 29 47 0 0 chr6 109453864 109453907 -72961335 + AT_rich Low_complexity Low_complexity 1 43 0 1667 191 0 10 chr6 109453953 109454262 -72960980 - AluJb SINE Alu -6 306 1 239 281 0 0 chr6 109455447 109455504 -72959738 + L2 LINE L2 3216 3272 0 269 374 59 14 chr6 109456215 109456437 -72958805 - MIR SINE MIR -12 250 19 390 42 0 0 chr6 109456744 109456792 -72958450 + (CA)n Simple_repeat Simple_repeat 2 49 0 378 265 118 45 chr6 109456949 109457130 -72958112 - MIR SINE MIR -35 227 34 28 0 0 0 chr6 109457813 109457841 -72957401 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr6 109458026 109458076 -72957166 + AT_rich Low_complexity Low_complexity 1 50 0 2048 157 0 42 chr6 109458098 109458475 -72956767 + MER47A DNA MER2_type 6 366 0 207 265 24 12 chr6 109458552 109458635 -72956607 + (TAAA)n Simple_repeat Simple_repeat 3 86 0 1209 195 28 115 chr6 109458665 109459065 -72956177 + MLT1A1 LTR MaLR 1 365 0 42 58 0 29 chr6 109459074 109459177 -72956065 + AT_rich Low_complexity Low_complexity 1 100 0 22 35 0 0 chr6 109459666 109459695 -72955547 + AT_rich Low_complexity Low_complexity 1 29 0 310 86 0 13 chr6 109460212 109460262 -72954980 + MER34 LTR ERV1 1 39 -503 193 165 22 44 chr6 109460269 109460360 -72954882 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 29 0 0 0 chr6 109460382 109460411 -72954831 + AT_rich Low_complexity Low_complexity 1 29 0 577 271 69 17 chr6 109460412 109460700 -72954542 + MER34B LTR ERV1 263 565 0 832 173 86 0 chr6 109462059 109462221 -72953021 - AluJb SINE Alu -2 310 135 2018 117 10 16 chr6 109462525 109462832 -72952410 + AluSx SINE Alu 1 305 -7 223 343 36 80 chr6 109463005 109463142 -72952100 - L2 LINE L2 0 3272 3142 28 79 0 0 chr6 109465153 109465216 -72950026 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr6 109465240 109465261 -72949981 + AT_rich Low_complexity Low_complexity 1 21 0 191 145 48 0 chr6 109465989 109466072 -72949170 + (TA)n Simple_repeat Simple_repeat 1 87 0 21 36 0 0 chr6 109466181 109466209 -72949033 + AT_rich Low_complexity Low_complexity 1 28 0 613 221 86 39 chr6 109466883 109467177 -72948065 + MER33 DNA MER1_type 8 363 0 180 324 110 29 chr6 109468894 109469067 -72946175 - L2 LINE L2 -110 3203 3017 1632 231 80 36 chr6 109469067 109469577 -72945665 + MER39 LTR ERV1 1 707 0 2052 123 10 0 chr6 109470904 109471205 -72944037 - AluSx SINE Alu -8 304 1 892 63 70 0 chr6 109472449 109472592 -72942650 + L1MA2 LINE L1 6034 6186 -118 999 176 34 76 chr6 109472592 109472830 -72942412 + AluJo SINE Alu 1 228 -84 979 106 0 0 chr6 109472859 109473001 -72942241 + L1MA3 LINE L1 6164 6305 0 564 295 68 19 chr6 109473513 109473706 -72941536 - MIR SINE MIR -6 256 44 2009 108 0 4 chr6 109474089 109474366 -72940876 + AluSg1 SINE Alu 1 276 -33 180 0 0 0 chr6 109474366 109474386 -72940856 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 26 0 0 0 chr6 109475263 109475289 -72939953 + AT_rich Low_complexity Low_complexity 1 26 0 377 329 29 7 chr6 109476484 109476624 -72938618 + MIR SINE MIR 49 191 -71 444 294 73 11 chr6 109476770 109476947 -72938295 + MIR SINE MIR 49 236 -26 312 169 65 0 chr6 109477610 109477687 -72937555 - L1MA3 LINE L1 -1 6304 6223 21 0 0 0 chr6 109478273 109478294 -72936948 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 109478396 109478417 -72936825 + AT_rich Low_complexity Low_complexity 1 21 0 335 105 18 0 chr6 109478799 109478856 -72936386 + (TG)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr6 109478916 109478937 -72936305 + AT_rich Low_complexity Low_complexity 1 21 0 1633 161 26 3 chr6 109478937 109479241 -72936001 + L1MA6 LINE L1 5990 6300 0 222 224 30 60 chr6 109479817 109479884 -72935358 + MER5B DNA MER1_type 82 146 -32 339 113 13 0 chr6 109480210 109480274 -72934968 - L1M LINE L1 -806 5355 5288 226 291 0 58 chr6 109480419 109480505 -72934737 - L2 LINE L2 -199 3073 2993 1340 136 25 0 chr6 109480775 109481041 -72934201 - L1PA15 LINE L1 -680 5485 5212 * 2158 121 156 0 chr6 109481035 109481407 -72933835 + L1PA15 LINE L1 5455 5884 -281 792 152 7 7 chr6 109481408 109481553 -72933689 + L1PA15 LINE L1 6019 6163 -2 366 291 76 47 chr6 109481777 109481949 -72933293 - L2 LINE L2 -1278 2036 1860 1735 228 58 6 chr6 109482162 109482248 -72932994 + Charlie1b DNA MER1_type 1 81 -2680 2092 112 7 0 chr6 109482248 109482543 -72932699 - AluSg SINE Alu -13 297 1 1735 228 58 6 chr6 109482543 109482952 -72932290 + Charlie1b DNA MER1_type 81 522 -1 221 299 201 41 chr6 109483139 109483333 -72931909 + MIR SINE MIR 37 261 -1 264 203 0 17 chr6 109483848 109483907 -72931335 - L2 LINE L2 0 3313 3256 249 337 123 12 chr6 109487048 109487211 -72928031 + MIR SINE MIR 56 236 -26 2183 261 29 29 chr6 109487495 109488114 -72927128 + MER77 LTR ERV1 54 638 -4 914 308 36 9 chr6 109488141 109488476 -72926766 + L2 LINE L2 2302 2645 -669 2053 128 31 39 chr6 109489077 109489436 -72925806 + THE1B LTR MaLR 9 364 0 327 252 134 0 chr6 109489939 109490058 -72925184 - MLT1K LTR MaLR 0 588 454 12407 117 10 25 chr6 109492197 109494649 -72920593 + L1PA7 LINE L1 1 2458 -4003 6346 74 36 2 chr6 109494653 109496070 -72919172 + L1PA7 LINE L1 5006 6466 -3 1781 153 76 17 chr6 109496641 109496995 -72918247 - THE1C LTR MaLR 0 375 1 351 273 87 33 chr6 109497040 109497190 -72918052 - MIR SINE MIR -73 189 32 2158 130 3 0 chr6 109497799 109498106 -72917136 - AluSq SINE Alu -5 308 1 238 246 158 18 chr6 109498542 109498656 -72916586 - MIR SINE MIR -76 186 57 377 364 105 55 chr6 109500000 109500207 -72915035 - L2 LINE L2 -1 3271 3076 1865 138 40 3 chr6 109500207 109500503 -72914739 + AluSq SINE Alu 2 308 -5 377 364 105 55 chr6 109500503 109500732 -72914510 - L2 LINE L2 -196 3076 2813 627 291 29 10 chr6 109501411 109501617 -72913625 + L2 LINE L2 1614 1823 -1491 1475 211 44 15 chr6 109501617 109501958 -72913284 - MLT1A1 LTR MaLR -1 364 14 1284 223 309 10 chr6 109501971 109502450 -72912792 + L2 LINE L2 1819 2440 -874 833 243 160 45 chr6 109502463 109502776 -72912466 + L2 LINE L2 2952 3300 -13 216 0 0 0 chr6 109502776 109502800 -72912442 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 240 122 0 0 chr6 109503103 109503144 -72912098 + (A)n Simple_repeat Simple_repeat 1 41 0 204 235 0 20 chr6 109504757 109504808 -72910434 + MIR SINE MIR 81 130 -132 2180 134 43 3 chr6 109505015 109505365 -72909877 + THE1B LTR MaLR 1 364 0 272 321 0 12 chr6 109505779 109505863 -72909379 + L2 LINE L2 3227 3309 -4 788 222 134 10 chr6 109506032 109506226 -72909016 + MER20 DNA MER1_type 1 218 -1 377 314 109 29 chr6 109506943 109507182 -72908060 + MIR SINE MIR 4 261 -1 180 245 20 61 chr6 109507417 109507466 -72907776 - L3 LINE CR1 -1451 126 80 328 313 75 0 chr6 109507907 109508041 -72907201 - L2 LINE L2 0 3313 3170 21 36 0 0 chr6 109508210 109508238 -72907004 + AT_rich Low_complexity Low_complexity 1 28 0 300 229 82 41 chr6 109508891 109509013 -72906229 + L1ME4a LINE L1 5977 6103 -18 683 278 133 30 chr6 109509015 109509382 -72905860 - MLT1I LTR MaLR 0 409 5 4375 206 36 18 chr6 109510307 109511892 -72903350 + L1MB2 LINE L1 4558 6169 -2 21 82 0 0 chr6 109512004 109512053 -72903189 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr6 109512503 109512535 -72902707 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr6 109512890 109512933 -72902309 + AT_rich Low_complexity Low_complexity 1 43 0 245 208 0 148 chr6 109513290 109513314 -72901928 - MLT1I LTR MaLR 0 409 383 487 322 27 0 chr6 109513314 109513497 -72901745 + MER5A DNA MER1_type 1 188 -1 245 208 0 148 chr6 109513497 109513573 -72901669 - MLT1I LTR MaLR -26 383 324 293 305 92 18 chr6 109513711 109513875 -72901367 - MLT1I LTR MaLR -233 176 1 206 266 113 89 chr6 109513890 109514014 -72901228 + MER5A DNA MER1_type 63 189 0 327 49 0 0 chr6 109514494 109514535 -72900707 + (TATG)n Simple_repeat Simple_repeat 2 42 0 287 130 0 0 chr6 109514535 109514581 -72900661 - Alu SINE Alu -19 281 236 1903 121 28 3 chr6 109514793 109515082 -72900160 + AluSx SINE Alu 1 296 -16 1155 204 0 14 chr6 109515118 109515339 -72899903 - AluJb SINE Alu -8 304 87 1024 304 42 28 chr6 109515576 109515931 -72899311 + L2 LINE L2 2953 3312 -1 216 182 0 0 chr6 109515937 109515981 -72899261 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 29 60 0 0 chr6 109516117 109516167 -72899075 + AT_rich Low_complexity Low_complexity 1 50 0 439 372 110 36 chr6 109516222 109517182 -72898060 - L2 LINE L2 -339 2975 1945 6965 56 12 0 chr6 109517614 109518789 -72896453 - L1PA7 LINE L1 0 6154 4974 23 33 0 0 chr6 109519102 109519132 -72896110 + AT_rich Low_complexity Low_complexity 1 30 0 341 393 48 31 chr6 109519687 109520107 -72895135 + L2 LINE L2 2313 2739 -575 515 266 12 45 chr6 109520171 109520354 -72894888 + MIR SINE MIR 11 187 -21 254 327 103 26 chr6 109520649 109520805 -72894437 - MIR SINE MIR -84 178 11 200 250 0 0 chr6 109521743 109521783 -72893459 - L2 LINE L2 -42 3271 3232 351 332 194 14 chr6 109522179 109522534 -72892708 - L2 LINE L2 -493 2821 2403 185 343 14 14 chr6 109522574 109522644 -72892598 + MIR SINE MIR 165 234 -28 254 290 14 14 chr6 109522704 109522773 -72892469 - MIR SINE MIR -124 84 16 5663 124 11 3 chr6 109523480 109524413 -72890829 + L1PA16 LINE L1 5222 6161 -5 185 366 23 53 chr6 109524629 109524760 -72890482 + L2 LINE L2 3143 3269 -3 26 0 0 0 chr6 109525726 109525752 -72889490 + AT_rich Low_complexity Low_complexity 1 26 0 1890 146 7 0 chr6 109526689 109526964 -72888278 + AluSx SINE Alu 5 281 -31 462 49 0 0 chr6 109526976 109527037 -72888205 + (CA)n Simple_repeat Simple_repeat 2 62 0 231 114 0 0 chr6 109527148 109527183 -72888059 + (TG)n Simple_repeat Simple_repeat 2 36 0 437 327 65 51 chr6 109528443 109528706 -72886536 + L3 LINE CR1 1091 1349 -228 356 0 23 0 chr6 109528706 109528750 -72886492 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2143 102 0 0 chr6 109528752 109529035 -72886207 - AluY SINE Alu -28 283 1 437 327 65 51 chr6 109529035 109529057 -72886185 + L3 LINE CR1 1349 1369 -208 1250 185 0 116 chr6 109529057 109529386 -72885856 + AluJb SINE Alu 1 291 -11 437 327 65 51 chr6 109529386 109529466 -72885776 + L3 LINE CR1 1369 1465 -112 29 84 0 0 chr6 109530108 109530179 -72885063 + AT_rich Low_complexity Low_complexity 1 71 0 24 0 0 0 chr6 109531309 109531333 -72883909 + AT_rich Low_complexity Low_complexity 1 24 0 246 62 0 0 chr6 109532304 109532336 -72882906 + (GA)n Simple_repeat Simple_repeat 1 32 0 1783 149 14 7 chr6 109532662 109532951 -72882291 - AluJb SINE Alu -15 297 7 659 305 57 5 chr6 109533937 109534147 -72881095 + MIR SINE MIR 32 252 -10 244 307 23 23 chr6 109534208 109534296 -72880946 - MIR SINE MIR -163 99 12 21 57 0 0 chr6 109534788 109534823 -72880419 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 109535146 109535169 -72880073 + AT_rich Low_complexity Low_complexity 1 23 0 298 260 39 10 chr6 109536094 109536198 -72879044 + (CA)n Simple_repeat Simple_repeat 2 108 0 552 214 173 19 chr6 109536314 109536900 -72878342 + L1ME3A LINE L1 5271 6074 -96 353 309 99 29 chr6 109537012 109537338 -72877904 + L1ME4a LINE L1 5107 5461 -748 475 272 87 29 chr6 109537359 109537671 -72877571 + L1ME4a LINE L1 5530 5859 -262 22 35 0 0 chr6 109537763 109537792 -72877450 + AT_rich Low_complexity Low_complexity 1 29 0 273 348 56 30 chr6 109537862 109538129 -72877113 - L2 LINE L2 -1547 1767 1494 227 260 91 13 chr6 109539640 109539717 -72875525 + L1MC4 LINE L1 7783 7865 -177 491 348 161 45 chr6 109540074 109540990 -72874252 - L3 LINE CR1 -125 1452 431 333 0 0 0 chr6 109541373 109541410 -72873832 + (CA)n Simple_repeat Simple_repeat 2 38 0 191 302 79 0 chr6 109541653 109541716 -72873526 - MIR SINE MIR -2 260 193 21 71 0 0 chr6 109541776 109541818 -72873424 + AT_rich Low_complexity Low_complexity 1 42 0 208 352 19 38 chr6 109541965 109542070 -72873172 - MIR SINE MIR -158 104 2 263 306 14 0 chr6 109543386 109543458 -72871784 + MIR3 SINE MIR 93 165 -43 21 71 0 0 chr6 109543786 109543828 -72871414 + AT_rich Low_complexity Low_complexity 1 42 0 405 58 0 0 chr6 109545290 109545342 -72869900 + (CA)n Simple_repeat Simple_repeat 2 53 0 216 303 53 0 chr6 109545489 109545565 -72869677 + L2 LINE L2 3230 3309 -4 312 310 20 20 chr6 109545682 109545882 -72869360 + L1MC4a LINE L1 5674 5873 -1935 433 290 32 8 chr6 109545892 109546016 -72869226 + MIR SINE MIR 3 129 -133 32 26 0 0 chr6 109546076 109546115 -72869127 + AT_rich Low_complexity Low_complexity 1 39 0 312 342 9 9 chr6 109547515 109547626 -72867616 + MIR3 SINE MIR 44 154 -54 254 226 0 119 chr6 109547651 109547735 -72867507 + L2 LINE L2 3238 3311 -2 563 171 9 0 chr6 109548427 109548532 -72866710 - AluSp/q SINE Alu -9 304 199 271 229 0 29 chr6 109548691 109548761 -72866481 + GA-rich Low_complexity Low_complexity 2 69 0 383 295 16 31 chr6 109548825 109548954 -72866288 - MIR SINE MIR -96 166 40 28 61 0 0 chr6 109549828 109549877 -72865365 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr6 109551049 109551072 -72864170 + AT_rich Low_complexity Low_complexity 1 23 0 247 313 31 10 chr6 109551463 109551559 -72863683 + MIR3 SINE MIR 88 185 -23 9483 213 19 18 chr6 109551753 109555211 -72860031 + L1PA16 LINE L1 2705 6157 -9 308 141 0 42 chr6 109555463 109555534 -72859708 + (T)n Simple_repeat Simple_repeat 1 68 0 265 338 216 20 chr6 109555571 109555775 -72859467 - MIR SINE MIR -6 256 13 400 229 165 9 chr6 109556487 109556596 -72858646 - L2 LINE L2 0 3313 3188 3325 135 35 0 chr6 109556743 109557285 -72857957 - L1PA16 LINE L1 -11 6155 5595 27 29 0 0 chr6 109558156 109558190 -72857052 + AT_rich Low_complexity Low_complexity 1 34 0 226 133 0 0 chr6 109558372 109558417 -72856825 - LTR66 LTR ERVL -172 438 394 245 261 0 68 chr6 109558421 109558509 -72856733 - L1MC4 LINE L1 -1347 6695 6614 813 239 28 24 chr6 109558644 109558857 -72856385 + MER58A DNA MER1_type 6 219 -5 284 287 21 11 chr6 109558871 109558965 -72856277 + CT-rich Low_complexity Low_complexity 3 97 0 203 313 45 0 chr6 109559717 109559784 -72855458 + L2 LINE L2 3187 3256 -57 191 222 0 0 chr6 109559832 109559868 -72855374 - MIR3 SINE MIR -27 181 146 324 0 0 0 chr6 109561502 109561538 -72853704 + (TA)n Simple_repeat Simple_repeat 2 37 0 561 292 107 39 chr6 109561567 109561800 -72853442 + LTR16A LTR ERVL 26 274 -176 2197 144 100 8 chr6 109561879 109562269 -72852973 - MSTB LTR MaLR 0 426 1 21 0 0 0 chr6 109563048 109563069 -72852173 + AT_rich Low_complexity Low_complexity 1 21 0 358 222 32 106 chr6 109563198 109563387 -72851855 - LTR41 LTR ERVL -6 767 593 761 230 0 56 chr6 109563744 109563940 -72851302 - LTR41 LTR ERVL -588 185 1 268 285 58 36 chr6 109564260 109564397 -72850845 + L2 LINE L2 2228 2367 -947 239 186 0 0 chr6 109564441 109564484 -72850758 + MER63 DNA MER1_type 704 746 -316 1971 153 52 34 chr6 109564514 109564952 -72850290 + L1MA8 LINE L1 5846 6291 0 524 91 0 0 chr6 109565295 109565372 -72849870 - L1PA5 LINE L1 -8 6146 6070 885 179 34 22 chr6 109565415 109565442 -72849800 - FAM SINE Alu -136 49 148 237 65 0 0 chr6 109565442 109565473 -72849769 + (TG)n Simple_repeat Simple_repeat 2 32 0 885 179 34 22 chr6 109565473 109565624 -72849618 - FAM SINE Alu -36 149 1 185 352 66 0 chr6 109565763 109565854 -72849388 + L2 LINE L2 2866 2962 -310 348 324 46 46 chr6 109566204 109566445 -72848797 - HAL1 LINE L1 -754 1753 1513 366 221 60 163 chr6 109566519 109566656 -72848586 - L1MEd LINE L1 -4865 1254 1105 216 97 0 0 chr6 109566656 109566687 -72848555 + (TAGG)n Simple_repeat Simple_repeat 2 32 0 366 221 60 163 chr6 109566687 109566996 -72848246 - L1MEd LINE L1 -5014 1105 854 1724 143 3 68 chr6 109567213 109567521 -72847721 - AluSx SINE Alu -6 306 19 240 310 80 9 chr6 109567876 109567989 -72847253 - L1MEd LINE L1 -5732 387 267 30 27 0 0 chr6 109568136 109568173 -72847069 + AT_rich Low_complexity Low_complexity 1 37 0 180 344 153 6 chr6 109568565 109568722 -72846520 + L2 LINE L2 3134 3313 0 189 272 61 79 chr6 109570495 109570609 -72844633 - MIR3 SINE MIR -7 201 90 1111 142 71 212 chr6 109571513 109571759 -72843483 - THE1C LTR MaLR 0 375 201 2126 67 17 27 chr6 109571759 109572056 -72843186 + L1PA7 LINE L1 5859 6153 -1 1111 142 71 212 chr6 109572056 109572233 -72843009 - THE1C LTR MaLR -174 201 1 186 343 86 43 chr6 109572403 109572543 -72842699 + L2 LINE L2 3127 3272 0 * 198 152 0 0 chr6 109572541 109572574 -72842668 - L2 LINE L2 0 3272 3240 1462 94 52 14 chr6 109572600 109572812 -72842430 + MLT2A2 LTR ERVL 193 412 -41 263 292 0 0 chr6 109572840 109572929 -72842313 + L1MC4 LINE L1 6615 6703 -1339 262 154 0 39 chr6 109572952 109573004 -72842238 + MLT2B1 LTR ERVL 464 513 -7 1990 307 70 19 chr6 109573008 109574254 -72840988 - L2 LINE L2 -30 3283 1970 2308 103 0 0 chr6 109574254 109574556 -72840686 - AluSc SINE Alu -7 302 1 393 189 8 33 chr6 109574614 109574736 -72840506 + GA-rich Low_complexity Low_complexity 3 121 0 310 355 29 7 chr6 109574855 109574993 -72840249 + MIR SINE MIR 53 193 -69 472 294 92 46 chr6 109575016 109575254 -72839988 - MIR SINE MIR -12 250 2 23 0 0 0 chr6 109576695 109576718 -72838524 + AT_rich Low_complexity Low_complexity 1 23 0 225 164 73 0 chr6 109578013 109578093 -72837149 + (TATAA)n Simple_repeat Simple_repeat 1 85 0 23 86 0 0 chr6 109579029 109579087 -72836155 + AT_rich Low_complexity Low_complexity 1 58 0 27 49 0 0 chr6 109579226 109579267 -72835975 + AT_rich Low_complexity Low_complexity 1 41 0 286 147 18 28 chr6 109579735 109579844 -72835398 + (TA)n Simple_repeat Simple_repeat 1 108 0 191 318 106 0 chr6 109580485 109580551 -72834691 - L2 LINE L2 -13 3300 3228 1752 130 11 21 chr6 109580983 109581318 -72833924 + AluSx SINE Alu 3 334 0 186 43 0 0 chr6 109581355 109581378 -72833864 + (A)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr6 109581961 109581983 -72833259 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 109582303 109582332 -72832910 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr6 109582782 109582808 -72832434 + AT_rich Low_complexity Low_complexity 1 26 0 524 87 0 54 chr6 109582824 109582916 -72832326 + L1PA7 LINE L1 6014 6100 -54 524 327 40 24 chr6 109583779 109584027 -72831215 - MIR SINE MIR -4 258 7 27 0 0 0 chr6 109584628 109584655 -72830587 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr6 109584776 109584806 -72830436 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 109585332 109585354 -72829888 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 109587112 109587144 -72828098 + AT_rich Low_complexity Low_complexity 1 32 0 197 213 37 0 chr6 109587151 109587259 -72827983 + (TA)n Simple_repeat Simple_repeat 2 113 0 250 182 50 20 chr6 109587279 109587378 -72827864 + (TA)n Simple_repeat Simple_repeat 1 102 0 23 33 0 0 chr6 109587632 109587662 -72827580 + AT_rich Low_complexity Low_complexity 1 30 0 2211 144 18 70 chr6 109587924 109588167 -72827075 + Tigger2a DNA MER2_type 1 210 -2498 354 45 0 0 chr6 109588167 109588211 -72827031 + (TA)n Simple_repeat Simple_repeat 1 44 0 2211 144 18 70 chr6 109588211 109588425 -72826817 + Tigger2a DNA MER2_type 210 434 0 205 324 0 0 chr6 109591354 109591422 -72823820 - MIR SINE MIR -39 223 156 2094 124 0 13 chr6 109591484 109591790 -72823452 + AluSx SINE Alu 1 302 -10 295 259 60 42 chr6 109592147 109592313 -72822929 + L2 LINE L2 2205 2373 -941 1259 190 42 3 chr6 109592479 109592814 -72822428 - L1MA4 LINE L1 -6 6299 5928 205 250 42 42 chr6 109593057 109593129 -72822113 + L2 LINE L2 3224 3295 -18 24 0 0 0 chr6 109593834 109593858 -72821384 + AT_rich Low_complexity Low_complexity 1 24 0 207 394 32 14 chr6 109595945 109596161 -72819081 - L2 LINE L2 -1358 1956 1737 475 318 44 16 chr6 109597280 109597532 -72817710 + MIR SINE MIR 3 261 -1 1194 21 0 0 chr6 109597664 109597804 -72817438 + AluY SINE Alu 172 311 0 190 269 32 97 chr6 109600618 109600711 -72814531 - L2 LINE L2 0 3313 3227 428 336 0 0 chr6 109602433 109602552 -72812690 + L2 LINE L2 3195 3313 0 369 305 48 0 chr6 109603200 109603305 -72811937 - MIR3 SINE MIR -38 170 61 738 311 48 16 chr6 109604133 109604381 -72810861 + MIR SINE MIR 7 262 0 28 0 0 0 chr6 109604556 109604584 -72810658 + AT_rich Low_complexity Low_complexity 1 28 0 546 238 8 0 chr6 109605272 109605398 -72809844 + MIR SINE MIR 126 252 -10 202 148 37 0 chr6 109605402 109605456 -72809786 + (ATG)n Simple_repeat Simple_repeat 2 57 0 7511 32 0 0 chr6 109605468 109606802 -72808440 + L1PA4 LINE L1 4817 6150 -5 2770 10 0 3 chr6 109606995 109607306 -72807936 + AluYa5 SINE Alu 1 310 -1 720 288 96 8 chr6 109607420 109607660 -72807582 - MIR SINE MIR 0 262 2 625 307 48 0 chr6 109609277 109609466 -72805776 + MIR SINE MIR 47 244 -18 681 263 50 0 chr6 109610306 109610504 -72804738 - MIR SINE MIR -9 253 46 269 313 0 0 chr6 109610550 109610633 -72804609 + MIR SINE MIR 180 262 0 266 398 32 14 chr6 109610759 109610975 -72804267 - L3 LINE CR1 -1084 493 274 266 356 0 0 chr6 109612206 109612307 -72802935 + GA-rich Low_complexity Low_complexity 2 102 0 297 311 44 37 chr6 109612465 109612600 -72802642 - L2 LINE L2 0 3272 3137 462 49 0 0 chr6 109612696 109612757 -72802485 + (TG)n Simple_repeat Simple_repeat 1 61 0 265 340 165 24 chr6 109613352 109613564 -72801678 - L3 LINE CR1 -5 1572 1331 1352 127 35 0 chr6 109613581 109613810 -72801432 - L1MA2 LINE L1 0 6304 6068 462 49 0 0 chr6 109616648 109616709 -72798533 + (CA)n Simple_repeat Simple_repeat 2 62 0 204 179 0 0 chr6 109621404 109621443 -72793799 + (TATG)n Simple_repeat Simple_repeat 2 40 0 455 345 147 34 chr6 109621778 109622440 -72792802 - L2 LINE L2 -189 3083 2352 211 239 0 0 chr6 109622750 109622796 -72792446 + (TA)n Simple_repeat Simple_repeat 1 46 0 231 306 162 18 chr6 109623032 109623143 -72792099 + MIR3 SINE MIR 79 205 -3 257 353 167 9 chr6 109624313 109624534 -72790708 + L2 LINE L2 3014 3269 -3 963 244 97 3 chr6 109625609 109625917 -72789325 + MER46C DNA MER2_type 2 338 0 609 233 123 55 chr6 109625922 109626141 -72789101 - MIR SINE MIR -1 261 28 2271 108 0 3 chr6 109629101 109629408 -72785834 + AluSq SINE Alu 7 312 -1 21 0 0 0 chr6 109629721 109629742 -72785500 + AT_rich Low_complexity Low_complexity 1 21 0 396 231 11 0 chr6 109629769 109629860 -72785382 - MLT1I LTR MaLR -7 402 311 2148 122 6 6 chr6 109630103 109630414 -72784828 + AluSx SINE Alu 1 311 -1 223 348 148 9 chr6 109630525 109630640 -72784602 + L2 LINE L2 2931 3061 -211 42 48 0 0 chr6 109631183 109631246 -72783996 + AT_rich Low_complexity Low_complexity 1 63 0 296 289 35 9 chr6 109631697 109631811 -72783431 + MLT1I LTR MaLR 293 409 0 26 50 0 0 chr6 109632478 109632518 -72782724 + AT_rich Low_complexity Low_complexity 1 40 0 216 164 73 0 chr6 109633733 109633788 -72781454 + (TATAA)n Simple_repeat Simple_repeat 4 62 0 287 250 80 45 chr6 109634664 109634776 -72780466 + MIR SINE MIR 120 235 -27 414 0 0 0 chr6 109634791 109634837 -72780405 + (CA)n Simple_repeat Simple_repeat 2 47 0 242 331 41 0 chr6 109635076 109635197 -72780045 - L1ME LINE L1 -469 5652 5527 478 296 13 7 chr6 109635347 109635499 -72779743 + MER103 DNA DNA 12 164 -2 181 366 54 11 chr6 109635643 109635736 -72779506 + L2 LINE L2 3207 3303 -10 22 80 0 0 chr6 109636574 109636624 -72778618 + AT_rich Low_complexity Low_complexity 1 50 0 298 79 0 0 chr6 109636711 109636749 -72778493 - tRNA-Tyr-TAC tRNA tRNA -38 38 1 317 361 15 15 chr6 109636792 109636922 -72778320 - MIR SINE MIR -113 149 20 2706 189 2 6 chr6 109637496 109638037 -72777205 - L1 LINE L1 -1120 5026 4488 5624 123 1 23 chr6 109638038 109639220 -72776022 + L1PB1 LINE L1 4987 6148 -3 333 319 52 11 chr6 109639467 109639658 -72775584 + Charlie7 DNA MER1_type 1066 1264 -1348 * 1179 143 5 20 chr6 109639654 109639857 -72775385 + LTR9B LTR ERV1 445 644 0 637 228 7 21 chr6 109639862 109640007 -72775235 - L1ME LINE L1 -1139 5007 4865 546 303 36 24 chr6 109640056 109640393 -72774849 - L1ME LINE L1 -2847 3299 2959 3996 151 43 19 chr6 109640400 109641096 -72774146 + MER4E LTR ERV1 39 751 -28 29 0 0 0 chr6 109641096 109641125 -72774117 + AT_rich Low_complexity Low_complexity 1 29 0 635 287 39 4 chr6 109641198 109641452 -72773790 + Charlie7 DNA MER1_type 1350 1612 -1000 841 236 197 38 chr6 109641521 109641999 -72773243 + Charlie7 DNA MER1_type 1986 2539 -73 198 167 0 0 chr6 109642032 109642068 -72773174 + (TA)n Simple_repeat Simple_repeat 2 37 0 265 61 0 0 chr6 109642425 109642458 -72772784 - U2 snRNA snRNA -155 33 1 31 58 0 0 chr6 109642521 109642573 -72772669 + AT_rich Low_complexity Low_complexity 1 52 0 217 307 34 23 chr6 109642720 109642808 -72772434 - MIR3 SINE MIR -9 199 111 2200 111 0 3 chr6 109643293 109643599 -72771643 + AluSg SINE Alu 1 305 -5 266 248 70 102 chr6 109644878 109644932 -72770310 - MIR SINE MIR -58 204 150 2333 72 0 10 chr6 109644932 109645238 -72770004 - AluY SINE Alu -8 303 1 266 248 70 102 chr6 109645238 109645340 -72769902 - MIR SINE MIR -112 150 53 22 0 0 0 chr6 109645401 109645423 -72769819 + AT_rich Low_complexity Low_complexity 1 22 0 257 352 39 47 chr6 109645756 109645884 -72769358 + L2 LINE L2 3175 3301 -12 21 0 0 0 chr6 109646002 109646023 -72769219 + AT_rich Low_complexity Low_complexity 1 21 0 287 332 61 14 chr6 109646391 109646605 -72768637 - L1ME3A LINE L1 -213 5957 5734 416 299 249 6 chr6 109647926 109648103 -72767139 + MIR SINE MIR 28 247 -15 21 71 0 0 chr6 109649503 109649545 -72765697 + AT_rich Low_complexity Low_complexity 1 42 0 328 293 67 87 chr6 109650734 109651079 -72764163 + L2 LINE L2 1745 2082 -1232 611 265 45 70 chr6 109651648 109651961 -72763281 - L1ME LINE L1 -313 5808 5504 310 232 0 176 chr6 109652015 109652075 -72763167 - MIR SINE MIR -110 152 83 1484 168 74 0 chr6 109652075 109652331 -72762911 + AluSx SINE Alu 7 281 -31 216 0 0 0 chr6 109652334 109652358 -72762884 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 310 232 0 176 chr6 109652358 109652435 -72762807 - MIR SINE MIR -181 81 36 23 54 0 0 chr6 109653148 109653185 -72762057 + AT_rich Low_complexity Low_complexity 1 37 0 198 253 265 0 chr6 109654238 109654321 -72760921 - L2 LINE L2 -12 3301 3197 1290 0 0 0 chr6 109654955 109655098 -72760144 - L1PA3 LINE L1 -1126 5020 4878 7611 29 0 0 chr6 109655098 109656239 -72759003 + L1PA3 LINE L1 5010 6150 -5 419 336 8 8 chr6 109656704 109656832 -72758410 - L2 LINE L2 -3 3269 3142 183 259 19 0 chr6 109657039 109657093 -72758149 - L2 LINE L2 -424 2889 2835 2235 112 0 3 chr6 109657860 109658165 -72757077 + AluSx SINE Alu 1 304 -8 369 242 75 50 chr6 109658340 109658501 -72756741 + L1ME LINE L1 5519 5683 -438 250 33 0 0 chr6 109658570 109658600 -72756642 + (TTTA)n Simple_repeat Simple_repeat 2 176 0 2267 71 0 3 chr6 109658600 109658883 -72756359 - AluY SINE Alu -29 282 1 223 204 20 0 chr6 109658931 109658980 -72756262 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 420 55 0 0 chr6 109659106 109659161 -72756081 + (TA)n Simple_repeat Simple_repeat 1 55 0 1614 181 26 10 chr6 109659169 109659472 -72755770 - AluSx SINE Alu -4 308 1 25 0 0 0 chr6 109659580 109659605 -72755637 + AT_rich Low_complexity Low_complexity 1 25 0 268 263 126 0 chr6 109659910 109660005 -72755237 - MARNA DNA Mariner -17 569 463 378 97 83 0 chr6 109660065 109660209 -72755033 + (TA)n Simple_repeat Simple_repeat 1 156 0 442 353 12 4 chr6 109660572 109660827 -72754415 - L1MEc LINE L1 -4737 1573 1317 407 263 94 85 chr6 109660851 109661394 -72753848 - L1MEc LINE L1 -4889 1230 683 591 219 172 21 chr6 109661445 109661637 -72753605 + L1MC4a LINE L1 6733 6953 -855 478 328 15 19 chr6 109661888 109662147 -72753095 + L1MC4a LINE L1 7110 7367 -441 301 146 0 36 chr6 109662200 109662255 -72752987 - L1MC4 LINE L1 -1338 6704 6652 489 286 28 55 chr6 109662316 109662641 -72752601 + L1MC5 LINE L1 7609 7924 -37 397 286 146 79 chr6 109662662 109663183 -72752059 - L1MEc LINE L1 -5476 643 88 483 270 68 73 chr6 109663704 109663952 -72751290 + MIR SINE MIR 13 259 -3 246 238 179 0 chr6 109665452 109665536 -72749706 - MIR SINE MIR -69 139 41 325 281 52 74 chr6 109666291 109666426 -72748816 + L2 LINE L2 3182 3313 0 368 260 31 48 chr6 109666659 109666842 -72748400 - MIR SINE MIR -60 202 25 336 337 68 6 chr6 109668787 109668950 -72746292 + MIR3 SINE MIR 30 202 -6 333 0 0 0 chr6 109669555 109669592 -72745650 + (TG)n Simple_repeat Simple_repeat 2 38 0 1913 99 32 14 chr6 109670263 109670545 -72744697 + AluSx SINE Alu 3 289 -23 191 368 26 9 chr6 109671367 109671481 -72743761 + L2 LINE L2 2544 2659 -655 307 227 30 0 chr6 109671851 109671917 -72743325 + L2 LINE L2 3246 3313 0 1786 155 46 27 chr6 109672016 109672384 -72742858 - THE1C LTR MaLR 0 375 1 2037 71 0 46 chr6 109675339 109675622 -72739620 + AluY SINE Alu 34 303 -8 305 233 0 0 chr6 109677529 109677589 -72737653 - MIR SINE MIR -79 183 124 186 43 0 0 chr6 109677782 109677805 -72737437 + (TAAAAA)n Simple_repeat Simple_repeat 5 27 0 23 68 0 0 chr6 109679843 109679887 -72735355 + AT_rich Low_complexity Low_complexity 1 44 0 759 69 0 0 chr6 109680919 109681021 -72734221 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 259 312 32 76 chr6 109682845 109683002 -72732240 - MIR3 SINE MIR -41 167 18 205 349 45 0 chr6 109683948 109684014 -72731228 + L3 LINE CR1 1443 1511 -66 289 373 32 8 chr6 109684979 109685105 -72730137 - L3 LINE CR1 -5 1572 1444 41 36 0 0 chr6 109687781 109687836 -72727406 + AT_rich Low_complexity Low_complexity 1 55 0 307 374 7 22 chr6 109688422 109688561 -72726681 + MER5A DNA MER1_type 14 150 -39 2360 172 16 0 chr6 109688561 109688986 -72726256 + L1PB4 LINE L1 5715 6146 -10 21 0 0 0 chr6 109688986 109689007 -72726235 + AT_rich Low_complexity Low_complexity 1 21 0 2460 61 3 13 chr6 109689297 109689609 -72725633 + AluY SINE Alu 1 309 -2 278 233 27 14 chr6 109690079 109690152 -72725090 - MER103 DNA DNA -38 128 55 607 63 0 0 chr6 109690173 109690252 -72724990 - MLT2A2 LTR ERVL -374 79 1 22 0 0 0 chr6 109690259 109690281 -72724961 + AT_rich Low_complexity Low_complexity 1 22 0 385 238 67 88 chr6 109691943 109692136 -72723106 - MIR SINE MIR -33 229 41 1819 234 123 18 chr6 109692381 109692944 -72722298 + MLT1E2 LTR MaLR 1 622 -4 1829 120 72 4 chr6 109694056 109694332 -72720910 + AluSq SINE Alu 1 295 -18 205 167 0 0 chr6 109694502 109694538 -72720704 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 31 26 0 0 chr6 109696146 109696184 -72719058 + AT_rich Low_complexity Low_complexity 1 38 0 230 270 14 40 chr6 109697505 109697579 -72717663 - L2 LINE L2 -1 3312 3241 23 0 0 0 chr6 109697969 109697992 -72717250 + AT_rich Low_complexity Low_complexity 1 23 0 469 215 65 108 chr6 109701601 109701787 -72713455 + MER5B DNA MER1_type 1 178 0 226 313 74 45 chr6 109702320 109702496 -72712746 - MIR SINE MIR -34 228 48 329 357 14 0 chr6 109703095 109703235 -72712007 - MIR3 SINE MIR -3 205 64 333 295 19 0 chr6 109703276 109703381 -72711861 + T-rich Low_complexity Low_complexity 3 109 0 1133 199 35 15 chr6 109704417 109704678 -72710564 + MER39 LTR ERV1 393 658 -49 314 286 0 0 chr6 109705558 109705628 -72709614 - MIR3 SINE MIR -53 155 86 375 307 174 15 chr6 109705989 109706253 -72708989 + L3 LINE CR1 888 1193 -384 267 276 109 73 chr6 109706307 109706499 -72708743 + L3 LINE CR1 1352 1550 -27 453 166 41 0 chr6 109707035 109707180 -72708062 + (TA)n Simple_repeat Simple_repeat 2 152 0 24 67 0 0 chr6 109709720 109709765 -72705477 + AT_rich Low_complexity Low_complexity 1 45 0 1330 235 10 7 chr6 109709885 109710003 -72705239 + AluJo SINE Alu 1 117 -195 291 28 0 0 chr6 109710003 109710039 -72705203 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1330 235 10 7 chr6 109710039 109710209 -72705033 + AluJo SINE Alu 117 290 -22 202 48 0 71 chr6 109710212 109710254 -72704988 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 732 244 93 0 chr6 109711264 109711457 -72703785 + MER58A DNA MER1_type 12 222 -2 1519 155 12 21 chr6 109711615 109711948 -72703294 + MER61B LTR ERV1 2 425 0 1324 143 25 8 chr6 109712233 109712470 -72702772 + L1PA15 LINE L1 5925 6165 0 917 171 6 41 chr6 109712956 109713126 -72702116 + FRAM SINE Alu 1 164 -12 21 0 0 0 chr6 109713414 109713435 -72701807 + AT_rich Low_complexity Low_complexity 1 21 0 311 307 136 23 chr6 109714498 109714674 -72700568 + MIR SINE MIR 2 197 -65 201 364 0 0 chr6 109715239 109715305 -72699937 + L2 LINE L2 2174 2239 -1075 187 360 40 40 chr6 109715997 109716097 -72699145 - MIR SINE MIR -61 147 48 230 262 175 19 chr6 109716259 109716362 -72698880 - MIR SINE MIR -33 229 111 30 59 0 0 chr6 109717021 109717072 -72698170 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr6 109717192 109717221 -72698021 + AT_rich Low_complexity Low_complexity 1 29 0 458 36 0 0 chr6 109717231 109717315 -72697927 + L1PA5 LINE L1 6082 6165 0 188 347 95 50 chr6 109718128 109718390 -72696852 - L2 LINE L2 -660 2654 2381 208 222 0 74 chr6 109719679 109719733 -72695509 + L3 LINE CR1 1516 1565 -12 646 262 58 11 chr6 109720561 109720752 -72694490 - MIR SINE MIR -3 259 60 303 343 30 15 chr6 109720835 109720969 -72694273 - MIR SINE MIR -5 257 122 202 248 228 10 chr6 109721736 109721837 -72693405 + L2 LINE L2 3189 3311 -2 24 0 0 0 chr6 109721868 109721892 -72693350 + AT_rich Low_complexity Low_complexity 1 24 0 191 355 146 0 chr6 109722661 109722771 -72692471 + L2 LINE L2 3172 3297 -16 227 290 10 10 chr6 109726263 109726363 -72688879 + (ACTG)n Simple_repeat Simple_repeat 3 102 0 225 304 120 0 chr6 109726545 109726637 -72688605 - L2 LINE L2 -5 3267 3165 321 89 0 0 chr6 109727515 109727571 -72687671 - L1MA4A LINE L1 -4 6299 6244 1068 142 30 0 chr6 109727574 109727771 -72687471 + L1MA4 LINE L1 5957 6159 -141 500 270 52 46 chr6 109727772 109727946 -72687296 - MIR SINE MIR -87 175 1 230 310 14 0 chr6 109728046 109728117 -72687125 - L2 LINE L2 -817 2497 2426 32 57 0 0 chr6 109728669 109728722 -72686520 + AT_rich Low_complexity Low_complexity 1 53 0 1878 38 0 0 chr6 109728828 109729063 -72686179 + L1PA4 LINE L1 5550 5784 -371 3876 32 4 0 chr6 109729063 109729524 -72685718 + L1PA4 LINE L1 5680 6147 -8 3189 39 0 0 chr6 109729544 109729930 -72685312 + L1PA4 LINE L1 5770 6155 0 977 141 24 1 chr6 109730137 109730320 -72684922 - L1M3 LINE L1 -394 5786 5603 1488 164 19 36 chr6 109730394 109730759 -72684483 + L1M3 LINE L1 5254 5612 -556 330 336 9 9 chr6 109733319 109733432 -72681810 + L2 LINE L2 3183 3295 -18 878 239 17 0 chr6 109733445 109733625 -72681617 - MER5A DNA MER1_type -1 188 6 408 162 0 0 chr6 109733631 109733705 -72681537 - MER116 DNA Mariner -4 76 3 534 325 91 10 chr6 109733823 109734032 -72681210 + MIR SINE MIR 23 248 -14 364 263 60 15 chr6 109734387 109734520 -72680722 + MIR SINE MIR 91 229 -33 22 0 0 0 chr6 109735125 109735147 -72680095 + AT_rich Low_complexity Low_complexity 1 22 0 379 327 15 59 chr6 109736164 109736366 -72678876 - MIR3 SINE MIR -15 193 1 2589 101 22 0 chr6 109736769 109737125 -72678117 + THE1B LTR MaLR 1 364 0 198 143 0 0 chr6 109738075 109738110 -72677132 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 456 338 25 51 chr6 109738113 109738350 -72676892 - MIR SINE MIR -8 254 24 382 212 85 97 chr6 109738350 109738429 -72676813 + L1ME4a LINE L1 5754 5832 -289 2495 59 0 0 chr6 109738429 109738733 -72676509 + AluY SINE Alu 1 304 -7 382 212 85 97 chr6 109738733 109738818 -72676424 + L1ME4a LINE L1 5832 5916 -205 291 119 143 12 chr6 109738843 109738927 -72676315 + L1ME4a LINE L1 6018 6112 -9 268 208 132 0 chr6 109738969 109739075 -72676167 + L1ME4a LINE L1 5990 6109 -12 473 49 49 0 chr6 109739077 109739158 -72676084 + (CA)n Simple_repeat Simple_repeat 2 86 0 417 301 83 10 chr6 109739206 109739399 -72675843 + MLT1J LTR MaLR 1 207 -304 25 51 0 0 chr6 109739685 109739724 -72675518 + AT_rich Low_complexity Low_complexity 1 39 0 257 271 96 60 chr6 109739982 109740148 -72675094 + L2 LINE L2 3140 3311 -2 229 284 102 23 chr6 109742681 109742769 -72672473 + MER5B DNA MER1_type 84 178 0 587 117 0 0 chr6 109743296 109743390 -72671852 - L1PA15 LINE L1 -6 6159 6066 1700 142 11 0 chr6 109744658 109744940 -72670302 - MER7A DNA MER2_type 0 346 64 438 20 0 0 chr6 109744945 109744996 -72670246 + (CA)n Simple_repeat Simple_repeat 2 52 0 1065 214 89 102 chr6 109745225 109745716 -72669526 + MLT2B1 LTR ERVL 2 534 -20 244 157 20 20 chr6 109746365 109746416 -72668826 + L2 LINE L2 3263 3313 0 252 398 87 6 chr6 109746670 109746831 -72668411 + MIR3 SINE MIR 34 207 -1 25 0 0 0 chr6 109747855 109747880 -72667362 + AT_rich Low_complexity Low_complexity 1 25 0 327 284 27 7 chr6 109748167 109748315 -72666927 + Charlie8 DNA MER1_type 60 210 -2207 207 173 0 0 chr6 109751811 109751863 -72663379 + (TG)n Simple_repeat Simple_repeat 2 53 0 300 91 0 0 chr6 109752678 109752722 -72662520 + (TG)n Simple_repeat Simple_repeat 1 44 0 231 231 19 0 chr6 109753070 109753122 -72662120 + (CA)n Simple_repeat Simple_repeat 2 54 0 33 80 0 0 chr6 109756113 109756188 -72659054 + AT_rich Low_complexity Low_complexity 1 75 0 21 57 0 0 chr6 109756461 109756496 -72658746 + AT_rich Low_complexity Low_complexity 1 35 0 254 272 12 12 chr6 109760371 109760452 -72654790 + (CGG)n Simple_repeat Simple_repeat 1 81 0 205 330 88 22 chr6 109762524 109762615 -72652627 + L2 LINE L2 3156 3252 -20 304 306 132 16 chr6 109763345 109763466 -72651776 - MIR3 SINE MIR -16 192 58 321 297 101 27 chr6 109763729 109763877 -72651365 - MIR3 SINE MIR -48 160 2 539 248 32 13 chr6 109763913 109764070 -72651172 - L2 LINE L2 -1719 1595 1436 340 316 36 47 chr6 109764265 109764458 -72650784 - L2 LINE L2 -1880 1434 1244 2039 127 0 7 chr6 109764696 109764996 -72650246 - AluSx SINE Alu -12 300 3 246 282 141 0 chr6 109765001 109765079 -72650163 - L2 LINE L2 0 3313 3225 421 268 25 16 chr6 109765582 109765707 -72649535 - MIR SINE MIR -46 162 36 512 155 19 0 chr6 109766383 109766486 -72648756 - L1MA9 LINE L1 -39 6273 6169 693 106 0 0 chr6 109766488 109766592 -72648650 + (TTTC)n Simple_repeat Simple_repeat 4 107 0 193 225 0 0 chr6 109767868 109767908 -72647334 - MIR SINE MIR -111 151 112 209 260 19 34 chr6 109767980 109768072 -72647170 + MIR SINE MIR 88 176 -32 196 283 33 17 chr6 109768105 109768165 -72647077 - MIR SINE MIR -114 94 34 333 341 0 0 chr6 109768424 109768509 -72646733 + L2 LINE L2 1119 1203 -2111 1432 214 54 44 chr6 109768513 109768926 -72646316 + MLT1C LTR MaLR 7 330 -44 2040 310 135 36 chr6 109769061 109770122 -72645120 + L2 LINE L2 1654 2920 -393 2061 112 3 11 chr6 109770122 109770477 -72644765 - AluSp SINE Alu 0 353 1 2040 310 135 36 chr6 109770477 109770903 -72644339 + L2 LINE L2 2920 3303 -10 243 0 0 0 chr6 109771649 109771676 -72643566 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr6 109772331 109772352 -72642890 + (TA)n Simple_repeat Simple_repeat 1 21 0 315 0 0 0 chr6 109773772 109773807 -72641435 + (TG)n Simple_repeat Simple_repeat 1 35 0 3047 132 6 28 chr6 109774295 109774827 -72640415 + L1MC1 LINE L1 5814 6333 0 1770 191 13 29 chr6 109774984 109775360 -72639882 + MLT1A2 LTR MaLR 1 370 -4 29 47 0 0 chr6 109775613 109775656 -72639586 + AT_rich Low_complexity Low_complexity 1 43 0 216 366 11 0 chr6 109776680 109776773 -72638469 - MIR SINE MIR -143 119 26 292 364 6 29 chr6 109779461 109779634 -72635608 - MIR SINE MIR -74 188 20 28 29 0 0 chr6 109780271 109780306 -72634936 + AT_rich Low_complexity Low_complexity 1 35 0 2125 114 0 10 chr6 109780313 109780612 -72634630 + AluSc SINE Alu 1 296 -13 230 277 84 0 chr6 109781194 109781277 -72633965 - MIR SINE MIR -139 123 34 412 278 45 23 chr6 109783794 109783927 -72631315 + L2 LINE L2 3178 3313 0 547 333 131 33 chr6 109784958 109785355 -72629887 - L1MC4a LINE L1 -1879 5929 5494 26 0 0 0 chr6 109785538 109785564 -72629678 + AT_rich Low_complexity Low_complexity 1 26 0 363 100 25 25 chr6 109785638 109785718 -72629524 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 513 297 20 12 chr6 109786005 109786208 -72629034 - L2 LINE L2 -325 2988 2789 22 0 0 0 chr6 109786364 109786386 -72628856 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 109787053 109787074 -72628168 + AT_rich Low_complexity Low_complexity 1 21 0 284 375 35 43 chr6 109787534 109787766 -72627476 - L2 LINE L2 0 3272 3043 573 88 0 0 chr6 109788697 109788777 -72626465 + MADE1 DNA Mariner 1 80 0 517 256 143 12 chr6 109789391 109789559 -72625683 + MIR SINE MIR 73 262 0 704 329 31 12 chr6 109789703 109790119 -72625123 - L1ME4a LINE L1 -241 5880 5457 446 261 11 85 chr6 109790376 109790552 -72624690 - L2 LINE L2 -1 3312 3150 2159 121 3 0 chr6 109790631 109790921 -72624321 + AluSx SINE Alu 1 291 -21 493 266 76 13 chr6 109791035 109791193 -72624049 - MER5B DNA MER1_type -4 174 7 296 245 7 64 chr6 109791499 109791637 -72623605 - MLT1I LTR MaLR -10 440 266 23 0 0 0 chr6 109791792 109791815 -72623427 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr6 109793946 109793995 -72621247 + AT_rich Low_complexity Low_complexity 1 49 0 234 116 0 0 chr6 109797328 109797371 -72617871 + (GA)n Simple_repeat Simple_repeat 2 44 0 261 310 0 108 chr6 109797789 109797918 -72617324 - MIR3 SINE MIR -26 182 68 336 48 0 0 chr6 109798147 109798189 -72617053 + (CA)n Simple_repeat Simple_repeat 1 42 0 389 306 8 32 chr6 109798380 109798504 -72616738 - L2 LINE L2 -6 3307 3187 215 204 0 56 chr6 109798570 109798624 -72616618 + L3 LINE CR1 1504 1554 -23 195 42 0 0 chr6 109800086 109800110 -72615132 + (CA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr6 109800277 109800299 -72614943 + AT_rich Low_complexity Low_complexity 1 22 0 2393 213 65 90 chr6 109802894 109803246 -72611996 - Charlie7 DNA MER1_type -32 2580 2221 2238 97 7 0 chr6 109803246 109803544 -72611698 + AluSq SINE Alu 1 300 -13 2393 213 65 90 chr6 109803544 109804363 -72610879 - Charlie7 DNA MER1_type -391 2221 1438 663 274 116 17 chr6 109804371 109804663 -72610579 - Charlie7 DNA MER1_type -2291 321 1 1685 148 36 4 chr6 109804708 109805016 -72610226 - AluJo SINE Alu 0 317 1 2187 24 0 0 chr6 109807085 109807436 -72607806 - L1P2 LINE L1 -639 5516 5166 387 0 0 20 chr6 109807436 109807482 -72607760 + L1PA3 LINE L1 6103 6152 -3 23 54 0 0 chr6 109807482 109807519 -72607723 + AT_rich Low_complexity Low_complexity 1 37 0 1799 175 0 7 chr6 109807612 109807915 -72607327 - AluSx SINE Alu -10 302 2 23 0 0 0 chr6 109807920 109807943 -72607299 + AT_rich Low_complexity Low_complexity 1 23 0 690 288 106 42 chr6 109808101 109808459 -72606783 - L1ME3A LINE L1 -276 5894 5567 592 271 71 64 chr6 109811375 109811984 -72603258 + L1M4 LINE L1 2856 3468 -2678 2600 263 105 37 chr6 109812126 109812988 -72602254 + L1MEc LINE L1 196 1143 -5253 799 159 0 0 chr6 109812988 109813114 -72602128 + FLAM_C SINE Alu 1 126 -7 2600 263 105 37 chr6 109813114 109813297 -72601945 + L1MEc LINE L1 1143 1312 -5084 * 12869 179 40 14 chr6 109813294 109814555 -72600687 + L1MA1 LINE L1 13 1239 -6326 2559 56 0 0 chr6 109814555 109814861 -72600381 + AluY SINE Alu 1 306 -5 12869 179 40 14 chr6 109814861 109816038 -72599204 + L1MA1 LINE L1 1239 2515 -5050 14560 156 13 6 chr6 109816045 109819775 -72595467 + L1MA1 LINE L1 3964 7721 0 3455 247 63 45 chr6 109819822 109820372 -72594870 + L1MEc LINE L1 1449 1988 -4227 1338 272 44 30 chr6 109820372 109820831 -72594411 + LTR40c LTR ERVL 1 465 0 3455 247 63 45 chr6 109820831 109822307 -72592935 + L1MEc LINE L1 1988 3500 -2715 314 212 62 9 chr6 109822304 109822417 -72592825 - L1M LINE L1 -782 5380 5262 * 776 165 0 15 chr6 109822541 109822674 -72592568 + FLAM_C SINE Alu 1 131 -12 2434 62 3 3 chr6 109822729 109823035 -72592207 + AluY SINE Alu 4 309 -2 1498 182 21 80 chr6 109823075 109823473 -72591769 + MER67C LTR ERV1 1 403 -251 4681 259 56 14 chr6 109823659 109825202 -72590040 + L1MEc LINE L1 3557 5164 -1051 27 29 0 0 chr6 109826849 109826883 -72588359 + AT_rich Low_complexity Low_complexity 1 34 0 223 264 55 77 chr6 109827365 109827456 -72587786 + MER5B DNA MER1_type 6 94 -84 301 43 43 0 chr6 109827502 109827549 -72587693 + (GAAA)n Simple_repeat Simple_repeat 3 51 0 4415 251 24 7 chr6 109827549 109828900 -72586342 + L1MB4 LINE L1 2630 4003 -2143 1374 188 104 0 chr6 109828912 109829257 -72585985 - L1MA9 LINE L1 0 6312 5932 * 2434 260 19 45 chr6 109829242 109830132 -72585110 + L1MB4 LINE L1 3989 4855 -1291 5807 106 31 0 chr6 109830134 109831389 -72583853 - L1PA13 LINE L1 0 6163 4911 3452 186 9 0 chr6 109831391 109832046 -72583196 + L1P LINE L1 2258 2918 -3228 3054 202 34 35 chr6 109832039 109832210 -72583032 + L1MB4 LINE L1 4823 4993 -1187 * 1929 131 7 10 chr6 109832210 109832507 -72582735 + AluSx SINE Alu 1 296 -16 3054 202 34 35 chr6 109832507 109833099 -72582143 + L1MB4 LINE L1 4993 5584 -596 414 57 0 0 chr6 109833099 109833152 -72582090 + (TA)n Simple_repeat Simple_repeat 1 53 0 3054 202 34 35 chr6 109833152 109833689 -72581553 + L1MB4 LINE L1 5584 6179 -1 5143 227 57 12 chr6 109833700 109836092 -72579150 + L1MC3 LINE L1 3664 5403 -743 1698 235 24 27 chr6 109836233 109836723 -72578519 + MLT1E2 LTR MaLR 2 612 -14 2463 56 0 3 chr6 109837037 109837342 -72577900 + AluY SINE Alu 1 304 -7 252 283 132 19 chr6 109837426 109837532 -72577710 + MIR3 SINE MIR 8 125 -83 2415 65 10 0 chr6 109838528 109838836 -72576406 + AluY SINE Alu 1 311 0 755 253 65 41 chr6 109839961 109840206 -72575036 - MIR SINE MIR -3 259 9 22 0 0 0 chr6 109840313 109840335 -72574907 + AT_rich Low_complexity Low_complexity 1 22 0 835 237 11 6 chr6 109841084 109841261 -72573981 + MER45A DNA AcHobo 1 178 0 192 244 192 0 chr6 109842176 109842254 -72572988 + MIR SINE MIR 169 261 -1 23 33 0 0 chr6 109842302 109842332 -72572910 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 109842780 109842808 -72572434 + AT_rich Low_complexity Low_complexity 1 28 0 398 215 127 103 chr6 109842829 109843046 -72572196 - L1 LINE L1 -2763 3383 3154 1693 202 3 3 chr6 109843046 109843358 -72571884 - AluJo SINE Alu 0 312 1 398 215 127 103 chr6 109843358 109843480 -72571762 - L1 LINE L1 -2992 3154 3036 216 241 44 22 chr6 109843567 109843704 -72571538 + (TATATG)n Simple_repeat Simple_repeat 6 145 0 23 97 0 0 chr6 109843788 109843860 -72571382 + AT_rich Low_complexity Low_complexity 1 72 0 306 308 114 81 chr6 109844001 109844731 -72570511 - L1 LINE L1 -3144 3002 2249 2116 248 49 105 chr6 109844749 109845932 -72569310 + L1M4 LINE L1 3149 4218 -1928 1571 137 101 0 chr6 109845932 109846247 -72568995 + AluSq SINE Alu 11 350 0 2116 248 49 105 chr6 109846247 109846689 -72568553 + L1M4 LINE L1 4218 4683 -1463 1569 193 0 23 chr6 109846905 109847206 -72568036 + AluJb SINE Alu 1 294 -18 1035 225 109 31 chr6 109847304 109847424 -72567818 + L1M4 LINE L1 4732 4841 -1305 1768 169 62 0 chr6 109847424 109847749 -72567493 - L1PA16 LINE L1 0 6166 5822 1035 225 109 31 chr6 109847749 109848076 -72567166 + L1M4 LINE L1 4841 5214 -932 4631 168 52 0 chr6 109848150 109849216 -72566026 + L1MA4 LINE L1 5069 6184 -116 311 229 14 76 chr6 109849245 109849389 -72565853 - L1M4 LINE L1 -1778 4368 4234 1308 212 62 0 chr6 109850210 109850498 -72564744 - LTR43 LTR ERV1 -121 481 176 212 268 119 39 chr6 109850775 109850880 -72564362 + MIR SINE MIR 45 156 -62 1011 216 62 133 chr6 109851010 109851511 -72563731 - LTR8 LTR ERV1 0 727 142 1781 141 69 30 chr6 109851562 109851923 -72563319 - THE1C LTR MaLR 0 375 1 909 225 6 122 chr6 109851944 109852250 -72562992 - LTR8 LTR ERV1 -424 267 1 613 224 11 77 chr6 109852617 109852800 -72562442 - MER104 DNA Tc2 -8 172 2 216 314 20 39 chr6 109853064 109853166 -72562076 - L2 LINE L2 -1075 2239 2140 186 71 0 0 chr6 109853522 109853550 -72561692 + (CAA)n Simple_repeat Simple_repeat 2 29 0 432 320 20 7 chr6 109854605 109854755 -72560487 - MIR SINE MIR -6 256 105 247 289 13 26 chr6 109854820 109854896 -72560346 - L2 LINE L2 0 3313 3239 787 206 103 0 chr6 109855111 109855315 -72559927 + LTR55 LTR ERV 1 225 -323 451 296 39 44 chr6 109855803 109855908 -72559334 + MIR SINE MIR 48 153 -109 392 195 0 0 chr6 109855908 109855985 -72559257 + MER116 DNA Mariner 1 77 -3 451 296 39 44 chr6 109855985 109856085 -72559157 + MIR SINE MIR 153 252 -10 678 288 78 37 chr6 109858319 109858614 -72556628 + MLT1I LTR MaLR 96 402 -7 210 250 0 0 chr6 109859042 109859102 -72556140 + T-rich Low_complexity Low_complexity 1 60 0 329 353 132 50 chr6 109859221 109859402 -72555840 + L2 LINE L2 2310 2475 -839 1737 161 55 30 chr6 109859402 109859768 -72555474 + THE1C LTR MaLR 1 375 0 9195 137 20 37 chr6 109859771 109861376 -72553866 + THE1C-int LTR MaLR 4 1580 0 1680 163 61 25 chr6 109861376 109861738 -72553504 + THE1C LTR MaLR 1 375 0 329 353 132 50 chr6 109861738 109861968 -72553274 + L2 LINE L2 2475 2760 -554 2149 157 40 0 chr6 109862651 109863026 -72552216 - MLT1B LTR MaLR 0 390 1 515 293 98 25 chr6 109863627 109863978 -72551264 - MLT1H LTR MaLR -74 335 1 351 315 0 0 chr6 109864437 109864529 -72550713 + L2 LINE L2 3176 3267 -5 573 339 114 3 chr6 109865460 109865749 -72549493 + L2 LINE L2 2901 3221 -92 561 282 58 15 chr6 109865904 109866110 -72549132 - MIR SINE MIR 0 262 48 1368 94 0 0 chr6 109868717 109868897 -72546345 - AluSp SINE Alu 0 313 134 2228 98 10 0 chr6 109868897 109869193 -72546049 - AluSx SINE Alu -13 299 1 942 216 0 0 chr6 109869326 109869493 -72545749 - L1PA13 LINE L1 -6157 630 464 231 149 54 81 chr6 109869547 109869621 -72545621 + L1PA13 LINE L1 424 495 -6292 * 599 210 34 0 chr6 109869569 109869688 -72545554 - L1PA13 LINE L1 -6330 457 335 * 8571 172 23 7 chr6 109869682 109871400 -72543842 - L1PA12 LINE L1 -5577 2004 1 2005 43 0 4 chr6 109871476 109871711 -72543531 + AluY SINE Alu 33 266 -45 666 225 13 7 chr6 109872168 109872318 -72542924 - MLT1B LTR MaLR 0 374 227 371 251 60 70 chr6 109872407 109872622 -72542620 - MLT1J LTR MaLR -189 322 110 1621 213 97 69 chr6 109872701 109873308 -72541934 + MLT1E3 LTR MaLR 1 624 0 359 331 109 78 chr6 109875981 109876714 -72538528 + L2 LINE L2 2139 2894 -420 21 0 0 0 chr6 109878567 109878588 -72536654 + AT_rich Low_complexity Low_complexity 1 21 0 195 186 0 0 chr6 109879212 109879255 -72535987 + (CA)n Simple_repeat Simple_repeat 2 44 0 11790 194 73 11 chr6 109879265 109881691 -72533551 - L1MA6 LINE L1 -117 6183 3470 2409 97 0 0 chr6 109881691 109882001 -72533241 + AluSg SINE Alu 1 310 0 11790 194 73 11 chr6 109882001 109883196 -72532046 - L1MA6 LINE L1 -2830 3470 2350 5884 205 47 75 chr6 109883200 109885680 -72529562 - L1M1 LINE L1 -3881 3327 1 190 331 56 14 chr6 109885714 109885856 -72529386 - L2 LINE L2 -903 2411 2264 329 377 9 0 chr6 109886033 109886139 -72529103 + L2 LINE L2 3146 3252 -20 296 279 50 101 chr6 109886265 109886484 -72528758 + L2 LINE L2 2844 3051 -221 793 263 36 0 chr6 109886517 109886711 -72528531 - MER63A DNA MER1_type -9 201 1 200 267 167 0 chr6 109886844 109886904 -72528338 + L2 LINE L2 3203 3272 0 2752 147 10 12 chr6 109887682 109888164 -72527078 - L1MB2 LINE L1 -3 6168 5688 2220 90 6 26 chr6 109889147 109889625 -72525617 + AluY SINE Alu 1 472 0 473 231 165 0 chr6 109889931 109890052 -72525190 + MER82 DNA MER2_type 3 143 -510 2042 213 18 18 chr6 109890502 109890948 -72524294 + MER82 DNA MER2_type 201 646 -7 190 307 142 8 chr6 109891423 109891550 -72523692 - MIR SINE MIR -68 194 51 373 252 72 27 chr6 109891717 109891828 -72523414 + LTR33 LTR ERVL 49 164 -357 2180 111 3 7 chr6 109891919 109892216 -72523026 + AluSx SINE Alu 4 299 -13 32 43 0 0 chr6 109892411 109892457 -72522785 + AT_rich Low_complexity Low_complexity 1 46 0 1392 240 30 65 chr6 109892822 109893060 -72522182 - L1ME1 LINE L1 -5 6230 5985 19148 92 18 25 chr6 109893060 109895785 -72519457 - Charlie3 DNA MER1_type -4 2706 1 1392 240 30 65 chr6 109895785 109896055 -72519187 - L1ME1 LINE L1 -250 5985 5740 248 111 22 0 chr6 109896317 109896362 -72518880 + CT-rich Low_complexity Low_complexity 1 46 0 3325 237 53 18 chr6 109896578 109897951 -72517291 - L1ME1 LINE L1 -492 5743 4314 2548 243 100 41 chr6 109897968 109898945 -72516297 - L1ME1 LINE L1 -5179 1217 183 241 68 45 0 chr6 109898956 109899000 -72516242 - Alu SINE Alu 0 300 255 357 213 56 28 chr6 109899000 109899108 -72516134 - L1ME1 LINE L1 -6248 148 38 306 322 31 63 chr6 109899108 109899363 -72515879 - MLT1K LTR MaLR -168 420 174 1901 158 0 3 chr6 109900999 109901302 -72513940 - AluSx SINE Alu -10 302 1 2086 114 0 4 chr6 109901409 109901690 -72513552 + AluSq SINE Alu 1 280 -33 261 0 0 0 chr6 109901693 109901722 -72513520 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2003 286 53 6 chr6 109901733 109902449 -72512793 + L1ME1 LINE L1 35 784 -5612 466 257 68 8 chr6 109902450 109902663 -72512579 - LTR54B LTR ERV1 -221 277 1 3002 172 12 3 chr6 109902672 109903241 -72512001 - L1 LINE L1 -916 5230 4657 1241 203 21 12 chr6 109903242 109903597 -72511645 + LTR54 LTR ERV1 66 510 0 555 143 18 6 chr6 109903610 109903740 -72511502 + L1MA8 LINE L1 5236 5363 -783 1943 282 43 5 chr6 109903741 109904504 -72510738 - L1M1 LINE L1 -4469 3096 2305 1521 143 70 0 chr6 109904510 109904796 -72510446 + L1MA8 LINE L1 5527 5832 -459 2242 109 0 0 chr6 109904796 109905098 -72510144 + AluSc SINE Alu 1 302 -7 256 191 0 0 chr6 109905120 109905167 -72510075 + L1M2 LINE L1 5814 5860 -431 3341 253 99 32 chr6 109905169 109905208 -72510034 + L1ME1 LINE L1 2245 2280 -3935 17628 34 5 0 chr6 109905208 109908120 -72507122 + L1PA4 LINE L1 3238 6155 0 3341 253 99 32 chr6 109908120 109909647 -72505595 + L1ME1 LINE L1 2280 3916 -2299 2764 236 100 13 chr6 109909740 109911126 -72504116 + L1ME1 LINE L1 4455 5947 -288 476 179 0 0 chr6 109911625 109911720 -72503522 + MER53 DNA DNA 94 188 -1 1631 244 28 15 chr6 109912051 109912514 -72502728 + L1ME3 LINE L1 5665 6133 -29 219 333 0 0 chr6 109914416 109914515 -72500727 + T-rich Low_complexity Low_complexity 1 99 0 360 333 7 15 chr6 109914592 109914727 -72500515 + MIR3 SINE MIR 72 205 -3 324 0 0 0 chr6 109915080 109915116 -72500126 + (CA)n Simple_repeat Simple_repeat 2 37 0 430 325 94 5 chr6 109915122 109915164 -72500078 + MIR SINE MIR 31 68 -194 5939 156 63 24 chr6 109915164 109916347 -72498895 - Tigger3b DNA MER2_type 0 1231 2 430 325 94 5 chr6 109916347 109916507 -72498735 + MIR SINE MIR 68 251 -11 2042 115 11 0 chr6 109916528 109916848 -72498394 - AluSq SINE Alu 0 323 1 662 328 119 24 chr6 109917241 109917860 -72497382 + L2 LINE L2 1443 2120 -1194 1502 207 62 13 chr6 109917867 109918197 -72497045 - MLT1A1 LTR MaLR -11 354 11 714 327 71 40 chr6 109918206 109918655 -72496587 + L2 LINE L2 2115 2577 -737 21 0 0 0 chr6 109918872 109918893 -72496349 + AT_rich Low_complexity Low_complexity 1 21 0 1118 325 64 12 chr6 109921538 109921829 -72493413 - LTR16C LTR ERVL 0 491 170 312 48 0 0 chr6 109921829 109921871 -72493371 + (TG)n Simple_repeat Simple_repeat 1 42 0 1118 325 64 12 chr6 109921871 109921998 -72493244 - LTR16C LTR ERVL -321 170 51 288 279 40 85 chr6 109922177 109922378 -72492864 - HERVL LTR ERVL -330 5324 5133 951 233 11 42 chr6 109922392 109922750 -72492492 + LTR2 LTR ERV1 3 449 0 2220 128 60 14 chr6 109922750 109923117 -72492125 + Harlequin LTR ERV1 1 384 -6512 35377 152 18 9 chr6 109923159 109928888 -72486354 + Harlequin LTR ERV1 464 6238 -1575 309 158 0 0 chr6 109928886 109928943 -72486299 + Harlequin LTR ERV1 6839 6895 -1 * 948 227 22 66 chr6 109928945 109929308 -72485934 + LTR2 LTR ERV1 3 449 0 820 315 52 22 chr6 109929312 109929674 -72485568 - HERVL LTR ERVL -607 5157 4785 5479 147 20 32 chr6 109929782 109930188 -72485054 + L1MA4 LINE L1 4958 5368 -932 2137 118 0 22 chr6 109930188 109930503 -72484739 + AluSx SINE Alu 1 308 -4 5479 147 20 32 chr6 109930503 109930539 -72484703 + L1MA4 LINE L1 5368 5403 -897 2170 124 3 3 chr6 109930539 109930846 -72484396 + AluSq SINE Alu 1 307 -6 5479 147 20 32 chr6 109930846 109931753 -72483489 + L1MA4 LINE L1 5403 6293 -7 253 338 57 32 chr6 109931781 109931938 -72483304 - HERVL LTR ERVL -1137 4627 4467 292 359 19 0 chr6 109931957 109932060 -72483182 - LTR16C LTR ERVL -386 105 1 212 286 71 0 chr6 109932060 109932130 -72483112 + MIR SINE MIR 109 183 -79 189 107 0 0 chr6 109933893 109933921 -72481321 + (TA)n Simple_repeat Simple_repeat 1 28 0 1237 250 43 3 chr6 109935136 109935460 -72479782 - MER58B DNA MER1_type -4 337 1 29 0 0 0 chr6 109935685 109935714 -72479528 + AT_rich Low_complexity Low_complexity 1 29 0 1746 183 3 0 chr6 109935773 109936084 -72479158 + AluSx SINE Alu 1 312 0 224 327 89 36 chr6 109936221 109936389 -72478853 + L2 LINE L2 1993 2169 -1145 224 340 19 58 chr6 109936411 109936567 -72478675 + L2 LINE L2 2238 2387 -927 1384 152 54 14 chr6 109936626 109936923 -72478319 - L1MA8 LINE L1 0 6291 5983 702 148 8 0 chr6 109936936 109937058 -72478184 + L1MA8 LINE L1 5856 5978 -322 378 291 47 30 chr6 109937058 109937376 -72477866 + MLT1J2 LTR MaLR 80 450 0 285 262 82 16 chr6 109937376 109937498 -72477744 + L2 LINE L2 2330 2459 -855 560 324 93 8 chr6 109937510 109937829 -72477413 + L2 LINE L2 2698 3049 -223 22 56 0 0 chr6 109937899 109937935 -72477307 + AT_rich Low_complexity Low_complexity 1 36 0 477 256 19 6 chr6 109938058 109938218 -72477024 + Charlie7 DNA MER1_type 2440 2601 -11 7645 21 0 0 chr6 109939088 109940457 -72474785 + L1PA2 LINE L1 4772 6140 -15 242 319 129 0 chr6 109940647 109940763 -72474479 - L2 LINE L2 -1 3312 3182 200 244 0 0 chr6 109941692 109941733 -72473509 + T-rich Low_complexity Low_complexity 1 41 0 237 255 93 56 chr6 109943034 109943250 -72471992 + HAL1 LINE L1 2279 2502 -5 479 279 73 61 chr6 109943294 109943978 -72471264 + L1MC5 LINE L1 7225 7916 -45 329 325 11 21 chr6 109944942 109945133 -72470109 - L1ME LINE L1 -315 5806 5618 234 150 0 0 chr6 109945152 109945192 -72470050 + (A)n Simple_repeat Simple_repeat 1 40 0 185 239 65 0 chr6 109946195 109946241 -72469001 + L2 LINE L2 3171 3219 -94 183 298 88 0 chr6 109947834 109947891 -72467351 - L2 LINE L2 -1 3271 3210 1255 209 138 3 chr6 109948972 109949269 -72465973 - MER2 DNA MER2_type -8 337 1 1294 190 21 119 chr6 109950644 109951023 -72464219 - MLT1A1 LTR MaLR 0 365 24 642 176 5 88 chr6 109951301 109951494 -72463748 - MER104 DNA MER2_type -3 177 1 879 197 10 36 chr6 109953547 109953740 -72461502 + MER5A DNA MER1_type 1 188 -1 23 33 0 0 chr6 109953791 109953821 -72461421 + AT_rich Low_complexity Low_complexity 1 30 0 1101 304 46 14 chr6 109954601 109955015 -72460227 + LTR16A LTR ERVL 16 442 -8 252 241 0 0 chr6 109955280 109955338 -72459904 - L1ME LINE L1 -311 5810 5753 1972 121 33 0 chr6 109955967 109956264 -72458978 - AluSx SINE Alu 0 306 1 428 322 174 4 chr6 109956264 109956522 -72458720 - L2 LINE L2 -599 2715 2414 792 173 14 24 chr6 109956524 109956836 -72458406 + MSTC LTR MaLR 1 396 0 258 196 0 20 chr6 109956951 109957002 -72458240 + L2 LINE L2 3222 3271 -1 23 0 0 0 chr6 109957584 109957607 -72457635 + AT_rich Low_complexity Low_complexity 1 23 0 239 114 23 0 chr6 109958747 109958791 -72456451 + (CA)n Simple_repeat Simple_repeat 2 46 0 2858 155 54 4 chr6 109958996 109959479 -72455763 + Tigger3b DNA MER2_type 35 541 -690 33758 62 4 5 chr6 109959488 109959704 -72455538 - L1PA5 LINE L1 0 6154 5939 2400 77 0 13 chr6 109959704 109960014 -72455228 - AluY SINE Alu -5 306 1 33758 62 4 5 chr6 109960014 109965936 -72449306 - L1PA5 LINE L1 -215 5939 13 248 117 0 144 chr6 109965952 109966063 -72449179 + Tigger3b DNA MER2_type 534 628 -604 9520 33 4 10 chr6 109966063 109968043 -72447199 + L1PA3 LINE L1 4237 6141 -31 1445 136 36 60 chr6 109968044 109968272 -72446970 + Tigger3b DNA MER2_type 594 813 -2215 2178 125 0 0 chr6 109968272 109968567 -72446675 + AluSx SINE Alu 1 295 -17 1445 136 36 60 chr6 109968567 109968670 -72446572 + Tigger3b DNA MER2_type 813 917 -314 375 314 109 29 chr6 109969384 109969623 -72445619 + MIR SINE MIR 4 261 -1 180 245 20 61 chr6 109969858 109969907 -72445335 - L3 LINE CR1 -1451 126 80 332 313 75 0 chr6 109970348 109970482 -72444760 - L2 LINE L2 0 3313 3170 21 36 0 0 chr6 109970651 109970679 -72444563 + AT_rich Low_complexity Low_complexity 1 28 0 300 229 82 41 chr6 109971332 109971454 -72443788 + L1ME4a LINE L1 5977 6103 -18 689 278 133 30 chr6 109971456 109971823 -72443419 - MLT1I LTR MaLR 0 409 5 682 239 19 0 chr6 109972748 109972903 -72442339 + L1MB2 LINE L1 4558 4715 -1431 * 43152 28 21 1 chr6 109972899 109978930 -72436312 + L1HS LINE L1 1 6155 0 180 0 0 0 chr6 109978934 109978954 -72436288 + (A)n Simple_repeat Simple_repeat 1 20 0 4256 208 34 17 chr6 109978954 109980407 -72434835 + L1MB2 LINE L1 4693 6169 -2 21 82 0 0 chr6 109980519 109980568 -72434674 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr6 109981018 109981050 -72434192 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr6 109981405 109981448 -72433794 + AT_rich Low_complexity Low_complexity 1 43 0 241 208 0 148 chr6 109981805 109981829 -72433413 - MLT1I LTR MaLR 0 409 383 486 322 27 0 chr6 109981829 109982012 -72433230 + MER5A DNA MER1_type 1 188 -1 241 208 0 148 chr6 109982012 109982088 -72433154 - MLT1I LTR MaLR -26 383 324 287 305 92 18 chr6 109982226 109982390 -72432852 - MLT1I LTR MaLR -233 176 1 200 266 113 89 chr6 109982405 109982529 -72432713 + MER5A DNA MER1_type 63 189 0 306 73 0 0 chr6 109983009 109983050 -72432192 + (TATG)n Simple_repeat Simple_repeat 2 42 0 295 130 0 0 chr6 109983050 109983096 -72432146 - Alu SINE Alu -19 282 237 2197 90 13 3 chr6 109983308 109983607 -72431635 + AluSx SINE Alu 1 302 -10 431 214 143 8 chr6 109983610 109983736 -72431506 + L1MC1 LINE L1 6182 6324 -9 23 33 0 0 chr6 109983963 109983993 -72431249 + AT_rich Low_complexity Low_complexity 1 30 0 1169 210 23 13 chr6 109984270 109984625 -72430617 + LTR54 LTR ERV1 66 510 0 555 143 18 6 chr6 109984638 109984768 -72430474 + L1 LINE L1 5236 5363 -783 1346 302 30 10 chr6 109984769 109985460 -72429782 - L1M1 LINE L1 -4469 1913 1122 211 314 20 39 chr6 109985653 109985755 -72429487 + L2 LINE L2 2140 2239 -1075 272 294 11 82 chr6 109986020 109986204 -72429038 + MER104 DNA Tc2 2 172 -8 261 308 17 33 chr6 109986750 109986870 -72428372 + MLT1I LTR MaLR 266 383 -26 451 279 76 13 chr6 109987194 109987352 -72427890 + MER5B DNA MER1_type 7 174 -4 1394 168 4 0 chr6 109987466 109987698 -72427544 - AluSx SINE Alu -21 291 59 21 36 0 0 chr6 109987955 109987983 -72427259 + AT_rich Low_complexity Low_complexity 1 28 0 2702 253 35 21 chr6 109988917 109989107 -72426135 + L1 LINE L1 3396 3582 -2564 1916 135 0 3 chr6 109989107 109989404 -72425838 - AluSg SINE Alu -14 296 1 2702 253 35 21 chr6 109989404 109990060 -72425182 + L1 LINE L1 3582 4254 -1892 450 261 34 0 chr6 109991602 109991721 -72423521 - L1PA13 LINE L1 -6330 457 335 * 4264 230 23 22 chr6 109991715 109992707 -72422535 - L1PA12 LINE L1 -5577 2004 1012 1276 162 4 31 chr6 109992813 109993072 -72422170 - L1MC1 LINE L1 -268 6065 5814 369 0 0 0 chr6 109993560 109993601 -72421641 + (CA)n Simple_repeat Simple_repeat 1 41 0 2194 241 30 20 chr6 109994419 109995109 -72420133 - L1M4 LINE L1 -1786 5779 5083 2030 227 21 43 chr6 109995120 109995806 -72419436 - L1MB4 LINE L1 -1 6179 5521 1482 172 37 4 chr6 109996083 109996387 -72418855 + AluJo SINE Alu 1 313 0 637 277 116 17 chr6 109996432 109996724 -72418518 + Charlie7 DNA MER1_type 1 321 -2291 851 229 52 105 chr6 109996732 109997334 -72417908 + Charlie7 DNA MER1_type 1438 2007 -605 538 266 43 23 chr6 110097348 110097718 -72317524 - L1M4 LINE L1 -4153 3414 3026 454 166 45 6 chr6 110097844 110098001 -72317241 + (TA)n Simple_repeat Simple_repeat 1 163 0 233 303 34 11 chr6 110098333 110098422 -72316820 + MIR SINE MIR 53 143 -119 206 214 0 0 chr6 110098907 110098949 -72316293 + (CA)n Simple_repeat Simple_repeat 2 43 0 687 170 0 0 chr6 110099722 110099863 -72315379 - L1MA4A LINE L1 -3 6300 6160 273 200 0 0 chr6 110099864 110099914 -72315328 - L1MA4A LINE L1 -427 5876 5827 * 669 124 54 0 chr6 110099908 110100037 -72315205 + L1MA5 LINE L1 5262 5397 -906 15113 172 16 19 chr6 110100046 110103044 -72312198 + L1PA11 LINE L1 2730 5713 -1136 4142 92 9 0 chr6 110103044 110103610 -72311632 + L1PA11 LINE L1 6294 6875 -2 2365 166 18 0 chr6 110103624 110104058 -72311184 + L1MA5 LINE L1 5386 5827 -473 389 191 32 13 chr6 110104277 110104434 -72310808 + (TA)n Simple_repeat Simple_repeat 2 161 0 1023 160 93 70 chr6 110105617 110105757 -72309485 - L1MA6 LINE L1 0 6300 6165 1257 201 92 28 chr6 110105757 110106040 -72309202 + AluJb SINE Alu 1 301 -1 1023 160 93 70 chr6 110106040 110106199 -72309043 - L1MA6 LINE L1 -135 6165 5994 468 244 144 11 chr6 110107475 110107655 -72307587 + LTR16A1 LTR ERVL 251 454 -3 258 203 54 14 chr6 110107696 110107770 -72307472 + MER114 LTR ERV 93 169 -479 627 261 49 0 chr6 110107803 110108006 -72307236 + MER114 LTR ERV 222 434 -214 2572 88 58 21 chr6 110108521 110108953 -72306289 + LTR7 LTR ERV1 1 448 -2 18844 92 14 81 chr6 110108955 110112365 -72302877 + HERVH LTR ERV1 1 5819 -1894 2632 63 45 13 chr6 110112363 110112743 -72302499 + HERVH LTR ERV1 7322 7713 0 * 2308 125 63 23 chr6 110112743 110113174 -72302068 + LTR7 LTR ERV1 1 448 -2 246 367 75 0 chr6 110113202 110113349 -72301893 + L2 LINE L2 2629 2786 -528 189 107 0 0 chr6 110114012 110114040 -72301202 + (T)n Simple_repeat Simple_repeat 1 28 0 228 35 0 0 chr6 110114563 110114592 -72300650 + (CA)n Simple_repeat Simple_repeat 1 29 0 2287 239 49 42 chr6 110214827 110215200 -72200042 + L1ME3 LINE L1 5466 5835 -327 2275 154 26 8 chr6 110215200 110215583 -72199659 + MLT1B LTR MaLR 1 390 0 2287 239 49 42 chr6 110215583 110215632 -72199610 + L1ME3 LINE L1 5835 5882 -280 1854 122 0 0 chr6 110215632 110215920 -72199322 + AluSx SINE Alu 27 314 0 2287 239 49 42 chr6 110215920 110216184 -72199058 + L1ME3 LINE L1 5882 6159 -3 360 294 27 55 chr6 110217047 110217193 -72198049 - MIR SINE MIR -64 144 3 614 149 67 8 chr6 110217243 110217377 -72197865 + MER96B DNA MER1_type? 80 221 -196 366 374 138 16 chr6 110218231 110218477 -72196765 - L2 LINE L2 -2 3270 2995 372 88 0 0 chr6 110218499 110218556 -72196686 + (ATG)n Simple_repeat Simple_repeat 3 59 0 227 136 182 30 chr6 110220427 110220493 -72194749 + LTR33A LTR ERVL 7 82 -441 440 303 161 8 chr6 110220532 110220786 -72194456 + LTR16C LTR ERVL 169 461 -30 379 245 19 19 chr6 110220976 110221082 -72194160 - MIR3 SINE MIR -6 202 97 195 348 22 0 chr6 110221441 110221533 -72193709 - L2 LINE L2 -214 3058 2965 410 282 90 0 chr6 110221606 110221762 -72193480 + MIR SINE MIR 2 171 -91 1302 268 107 16 chr6 110222042 110222490 -72192752 - LTR16C LTR ERVL -2 489 1 837 256 86 6 chr6 110223070 110223394 -72191848 - LTR16C LTR ERVL -52 439 90 200 204 0 0 chr6 110223520 110223564 -72191678 + L2 LINE L2 2716 2759 -555 302 291 107 15 chr6 110224183 110224379 -72190863 + LTR16C LTR ERVL 1 214 -277 552 228 28 61 chr6 110224423 110224603 -72190639 + LTR16C LTR ERVL 306 479 -12 194 222 19 0 chr6 110225987 110226041 -72189201 + GA-rich Low_complexity Low_complexity 6 60 0 449 333 145 0 chr6 110226139 110226367 -72188875 + LTR16C LTR ERVL 3 263 -228 608 205 8 0 chr6 110226420 110226537 -72188705 + LTR16C LTR ERVL 370 487 -4 2306 145 19 128 chr6 110226727 110227204 -72188038 - MSTA LTR MaLR -1 425 1 1419 281 101 32 chr6 110227706 110228121 -72187121 + L2 LINE L2 2449 2834 -479 1917 166 0 7 chr6 110228121 110228423 -72186819 - AluSx SINE Alu -12 300 1 1419 281 101 32 chr6 110228423 110228641 -72186601 + L2 LINE L2 2834 3035 -278 333 118 0 0 chr6 110228641 110228692 -72186550 + (CA)n Simple_repeat Simple_repeat 1 51 0 1419 281 101 32 chr6 110228692 110228845 -72186397 + L2 LINE L2 3035 3313 0 21 0 0 0 chr6 110228911 110228932 -72186310 + AT_rich Low_complexity Low_complexity 1 21 0 4314 108 0 0 chr6 110229236 110229790 -72185452 - MER41A LTR ERV1 0 554 1 330 253 20 20 chr6 110230350 110230449 -72184793 - MIR SINE MIR -8 254 156 5550 151 46 20 chr6 110230483 110230786 -72184456 - L1MDb LINE L1 -3890 2516 2223 4367 98 32 0 chr6 110230786 110231348 -72183894 + LTR19B LTR ERV1 1 580 0 5550 151 46 20 chr6 110231348 110232211 -72183031 - L1MDb LINE L1 -4183 2223 1318 230 258 90 22 chr6 110232214 110232303 -72182939 + MIR SINE MIR 97 191 -71 2046 104 24 7 chr6 110232874 110233162 -72182080 - AluSc SINE Alu -16 293 1 601 174 174 19 chr6 110233931 110234092 -72181150 - MER5A DNA MER1_type 0 189 4 2482 76 0 0 chr6 110234288 110234589 -72180653 + AluY SINE Alu 3 303 -8 228 284 0 0 chr6 110234783 110234850 -72180392 + L1P LINE L1 4880 4946 -1200 290 259 82 13 chr6 110235063 110235221 -72180021 - L1M4 LINE L1 -3126 3020 2852 4647 138 72 35 chr6 110235856 110236306 -72178936 - L1MA7 LINE L1 -6 6285 5853 2442 76 0 3 chr6 110236306 110236609 -72178633 - AluY SINE Alu -9 302 1 4647 138 72 35 chr6 110236609 110237050 -72178192 - L1MA7 LINE L1 -438 5853 5361 * 9107 154 43 7 chr6 110237048 110238639 -72176603 + L1 LINE L1 3656 5311 -835 207 0 0 0 chr6 110238639 110238662 -72176580 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9107 154 43 7 chr6 110238662 110238724 -72176518 + L1 LINE L1 5311 5369 -777 342 0 0 0 chr6 110238896 110238934 -72176308 + (TG)n Simple_repeat Simple_repeat 2 39 0 1665 175 51 7 chr6 110239387 110239679 -72175563 - AluJb SINE Alu -7 305 1 317 356 47 13 chr6 110239885 110240034 -72175208 + L1ME LINE L1 4673 4826 -1320 459 237 0 17 chr6 110240510 110240628 -72174614 + L1ME LINE L1 5567 5682 -439 1254 156 0 5 chr6 110240745 110240937 -72174305 + MER20 DNA MER1_type 29 219 0 222 267 0 0 chr6 110241235 110241295 -72173947 - MIR SINE MIR 0 262 203 264 228 176 29 chr6 110241405 110241541 -72173701 - L1ME4a LINE L1 -96 6025 5870 197 183 17 0 chr6 110241650 110241710 -72173532 + GA-rich Low_complexity Low_complexity 2 62 0 350 230 137 36 chr6 110241715 110241854 -72173388 + L1MC5 LINE L1 6957 7109 -852 181 229 0 42 chr6 110241890 110241938 -72173304 + L2 LINE L2 3227 3272 0 351 260 48 10 chr6 110242722 110242826 -72172416 - MIR3 SINE MIR -54 154 47 396 224 70 29 chr6 110243477 110243627 -72171615 + MIR SINE MIR 16 182 -62 26 0 0 0 chr6 110244531 110244557 -72170685 + AT_rich Low_complexity Low_complexity 1 26 0 247 325 103 0 chr6 110244605 110244722 -72170520 + MLT1J2 LTR MaLR 34 162 -288 333 265 12 12 chr6 110244753 110244836 -72170406 + MLT1I LTR MaLR 196 278 -131 241 339 42 0 chr6 110244963 110245081 -72170161 - MIR3 SINE MIR -53 155 33 244 311 56 0 chr6 110245865 110245955 -72169287 - L2 LINE L2 -18 3295 3201 1074 184 44 72 chr6 110246139 110246552 -72168690 - MLT1A1 LTR MaLR 0 396 1 289 361 28 7 chr6 110246668 110246812 -72168430 - L2 LINE L2 -507 2807 2661 454 328 31 0 chr6 110247249 110247377 -72167865 - MER91C DNA MER1_type -8 132 1 280 175 0 289 chr6 110247411 110247577 -72167665 + MER5B DNA MER1_type 59 176 -2 297 348 170 8 chr6 110247590 110247972 -72167270 + L2 LINE L2 1135 1578 -1736 581 235 184 26 chr6 110248059 110248293 -72166949 - MLT1H1 LTR MaLR 0 555 285 532 286 83 18 chr6 110248388 110248605 -72166637 - MLT1H1 LTR MaLR -244 305 75 1604 184 16 12 chr6 110249360 110249680 -72165562 + MER74C LTR ERVL 155 460 0 999 298 91 17 chr6 110250538 110250957 -72164285 + LTR16C LTR ERVL 27 476 -15 2027 148 0 0 chr6 110251162 110251460 -72163782 - AluSx SINE Alu -14 298 1 249 108 0 0 chr6 110251990 110252027 -72163215 + (TG)n Simple_repeat Simple_repeat 2 38 0 1244 261 93 3 chr6 110252108 110252495 -72162747 - MLT2E LTR ERVL -206 422 1 307 363 109 11 chr6 110253632 110254009 -72161233 + L1ME3A LINE L1 5531 5944 -226 245 304 0 0 chr6 110254349 110254418 -72160824 + L2 LINE L2 1869 1937 -1377 1678 202 165 15 chr6 110254456 110254936 -72160306 - L1ME1 LINE L1 -34 6132 5581 251 285 118 60 chr6 110254989 110255098 -72160144 + L2 LINE L2 2040 2141 -1173 2432 233 13 27 chr6 110255098 110255647 -72159595 + MER87 LTR ERV1 1 541 0 251 285 118 60 chr6 110255647 110255951 -72159291 + L2 LINE L2 2141 2477 -837 1883 196 34 115 chr6 110255951 110256338 -72158904 - MLT1E2 LTR MaLR 0 626 209 2971 64 84 77 chr6 110256338 110256792 -72158450 + L1PA7 LINE L1 5698 6154 0 1883 196 34 115 chr6 110256792 110256979 -72158263 - MLT1E2 LTR MaLR -417 209 103 1186 231 61 72 chr6 110256979 110257162 -72158080 + MLT1C LTR MaLR 1 184 -283 2154 82 3 18 chr6 110257162 110257444 -72157798 + AluSp SINE Alu 30 307 -6 1186 231 61 72 chr6 110257444 110257732 -72157510 + MLT1C LTR MaLR 184 467 0 1883 196 34 115 chr6 110257732 110257774 -72157468 - MLT1E2 LTR MaLR -523 103 59 234 258 30 0 chr6 110257816 110257882 -72157360 - MLT1E2 LTR MaLR -434 71 4 471 285 98 38 chr6 110257885 110258120 -72157122 + L2 LINE L2 2478 2726 -588 623 317 58 31 chr6 110258120 110258549 -72156693 - MLT1L LTR MaLR 0 615 71 1278 241 189 52 chr6 110259583 110259631 -72155611 - MLT1E1 LTR MaLR -4 650 610 2139 177 70 8 chr6 110259631 110260032 -72155210 - MSTB LTR MaLR 0 426 1 1278 241 189 52 chr6 110260032 110260555 -72154687 - MLT1E1 LTR MaLR -44 610 1 457 40 120 27 chr6 110260614 110260689 -72154553 + L1MA3 LINE L1 6224 6305 0 2710 141 26 0 chr6 110260979 110261399 -72153843 + Tigger2 DNA MER2_type 314 744 -1974 1368 143 67 0 chr6 110261492 110261730 -72153512 + Tigger2 DNA MER2_type 2452 2705 -13 204 220 11 55 chr6 110261730 110261809 -72153433 + (CATATA)n Simple_repeat Simple_repeat 4 80 -10 183 80 0 0 chr6 110261809 110261834 -72153408 + (TG)n Simple_repeat Simple_repeat 2 26 0 204 220 11 55 chr6 110261834 110261845 -72153397 + (CATATA)n Simple_repeat Simple_repeat 80 90 0 262 329 77 0 chr6 110261934 110262089 -72153153 - L3 LINE CR1 -193 1384 1218 446 269 88 64 chr6 110262302 110262789 -72152453 - L1ME LINE L1 -552 5618 5113 1280 260 38 3 chr6 110263100 110263469 -72151773 + L1ME1 LINE L1 500 881 -5515 2649 271 16 22 chr6 110263648 110264479 -72150763 + L1ME1 LINE L1 5405 6230 -5 28 29 0 0 chr6 110264544 110264579 -72150663 + AT_rich Low_complexity Low_complexity 1 35 0 209 317 37 0 chr6 110264731 110264813 -72150429 - L3 LINE CR1 -927 650 566 2259 180 18 52 chr6 110268829 110269268 -72145974 - MSTB LTR MaLR 0 426 3 7226 191 39 7 chr6 110269270 110270841 -72144401 - MSTB-int LTR MaLR 0 1651 31 283 93 0 0 chr6 110270841 110270884 -72144358 + MADE1 DNA Mariner 1 43 -37 2015 174 62 7 chr6 110270928 110271331 -72143911 - MSTA LTR MaLR 0 428 4 359 261 44 89 chr6 110271475 110271655 -72143587 + MLT1J LTR MaLR 287 458 -53 224 267 209 19 chr6 110272032 110272137 -72143105 + MIR3 SINE MIR 83 207 -1 24 0 0 0 chr6 110272290 110272314 -72142928 + AT_rich Low_complexity Low_complexity 1 24 0 204 330 75 11 chr6 110273271 110273365 -72141877 + L2 LINE L2 3209 3308 -5 196 364 66 8 chr6 110273407 110273528 -72141714 + L2 LINE L2 2293 2420 -894 7469 29 25 0 chr6 110274137 110275774 -72139468 - L1PA4 LINE L1 0 6155 4489 1191 124 6 0 chr6 110276323 110276501 -72138741 - AluSq SINE Alu 0 313 135 756 258 88 0 chr6 110276514 110276708 -72138534 - MIR SINE MIR -49 213 3 25 0 0 0 chr6 110277605 110277630 -72137612 + AT_rich Low_complexity Low_complexity 1 25 0 390 120 0 0 chr6 110277899 110277974 -72137268 + (CATA)n Simple_repeat Simple_repeat 2 76 0 5191 136 8 52 chr6 110278009 110278948 -72136294 - L1PA16 LINE L1 -16 6150 5254 1704 248 21 0 chr6 110278946 110279369 -72135873 + L1P LINE L1 4789 5220 -926 * 244 383 55 0 chr6 110280375 110280503 -72134739 + MIR SINE MIR 32 166 -96 218 315 62 31 chr6 110280821 110280951 -72134291 + L3 LINE CR1 1433 1566 -11 241 286 32 0 chr6 110281232 110281295 -72133947 + MIR SINE MIR 76 140 -68 189 0 0 0 chr6 110283495 110283516 -72131726 + (A)n Simple_repeat Simple_repeat 1 21 0 219 308 22 33 chr6 110283554 110283645 -72131597 - MER5B DNA MER1_type 0 178 89 * 260 191 0 0 chr6 110283628 110283670 -72131572 + MER5A DNA MER1_type 148 189 0 431 286 0 20 chr6 110283671 110283769 -72131473 - MER5B DNA MER1_type -79 99 4 498 277 14 27 chr6 110284121 110284269 -72130973 - MIR SINE MIR -70 192 47 1339 221 19 23 chr6 110284542 110284850 -72130392 + AluJb SINE Alu 2 308 -4 19308 183 25 18 chr6 110285266 110288025 -72127217 + L1MA1 LINE L1 13 2752 -4969 288 0 0 0 chr6 110288025 110288057 -72127185 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 19308 183 25 18 chr6 110288057 110292952 -72122290 + L1MA1 LINE L1 2752 7721 0 1878 185 8 45 chr6 110293494 110293873 -72121369 - MLT1A1 LTR MaLR 0 365 1 188 83 0 28 chr6 110293886 110293922 -72121320 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 444 250 75 0 chr6 110294070 110294230 -72121012 + MER113 DNA MER1_type? 6 177 -344 290 80 20 0 chr6 110294694 110294744 -72120498 + (GA)n Simple_repeat Simple_repeat 2 52 0 227 398 82 4 chr6 110296515 110296746 -72118496 + L2 LINE L2 2607 2855 -459 1552 90 0 18 chr6 110296910 110297133 -72118109 - AluSg/x SINE Alu -10 302 84 21 36 0 0 chr6 110297214 110297242 -72118000 + AT_rich Low_complexity Low_complexity 1 28 0 11223 127 7 33 chr6 110297312 110299275 -72115967 - L1PA8 LINE L1 -2348 3798 1887 10561 105 3 0 chr6 110299275 110301638 -72113604 + L1PA8 LINE L1 3798 6168 -4 429 304 8 0 chr6 110301649 110301774 -72113468 + MIR SINE MIR 137 262 0 23 0 0 0 chr6 110301788 110301811 -72113431 + AT_rich Low_complexity Low_complexity 1 23 0 218 300 0 75 chr6 110301867 110301947 -72113295 + L2 LINE L2 3239 3312 -1 40595 36 21 2 chr6 110302016 110307846 -72107396 + L1PA2 LINE L1 207 6152 -3 231 191 0 0 chr6 110307891 110307959 -72107283 + (TG)n Simple_repeat Simple_repeat 1 68 0 200 270 27 27 chr6 110308127 110308201 -72107041 + MIR3 SINE MIR 132 205 -3 3126 158 12 49 chr6 110309010 110309585 -72105657 - MLT2B3 LTR ERVL 0 554 1 232 339 9 26 chr6 110309712 110309827 -72105415 + L2 LINE L2 3190 3302 -11 1005 184 150 71 chr6 110310200 110310466 -72104776 - AluJo SINE Alu -14 288 2 482 301 28 0 chr6 110310667 110310880 -72104362 - LTR37B LTR ERV1 -13 455 237 23 0 0 0 chr6 110311055 110311078 -72104164 + AT_rich Low_complexity Low_complexity 1 23 0 651 207 0 0 chr6 110311227 110311348 -72103894 - FLAM_C SINE Alu -10 123 3 211 287 46 0 chr6 110311358 110311445 -72103797 + MIR SINE MIR 172 262 0 252 273 0 0 chr6 110312638 110312704 -72102538 + T-rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr6 110312947 110312980 -72102262 + AT_rich Low_complexity Low_complexity 1 33 0 200 288 0 0 chr6 110313641 110313707 -72101535 + A-rich Low_complexity Low_complexity 1 66 0 31 26 0 0 chr6 110313835 110313873 -72101369 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr6 110313914 110313942 -72101300 + AT_rich Low_complexity Low_complexity 1 28 0 411 296 52 72 chr6 110314127 110314377 -72100865 + L1MEc LINE L1 1262 1506 -4890 196 348 11 22 chr6 110314410 110314499 -72100743 + MIR SINE MIR 47 134 -128 * 227 215 0 46 chr6 110314478 110314543 -72100699 - MIR SINE MIR -32 230 169 25 0 0 0 chr6 110314585 110314610 -72100632 + AT_rich Low_complexity Low_complexity 1 25 0 275 309 12 0 chr6 110315710 110315791 -72099451 + CT-rich Low_complexity Low_complexity 3 84 0 682 278 38 101 chr6 110316077 110316552 -72098690 + L2 LINE L2 2858 3302 -11 1007 248 61 21 chr6 110316838 110317165 -72098077 + MER58B DNA MER1_type 2 341 0 1768 266 63 56 chr6 110317848 110319478 -72095764 + L1MD3 LINE L1 6267 7986 -9 395 266 82 34 chr6 110320349 110320556 -72094686 - MER102a DNA MER1_type -10 320 104 232 333 72 45 chr6 110321486 110321597 -72093645 + MIR SINE MIR 33 146 -116 412 245 168 13 chr6 110321637 110321792 -72093450 - MER5A DNA MER1_type 0 189 11 669 179 8 0 chr6 110322216 110322350 -72092892 + MER95 LTR ERV 9 143 -288 1956 113 0 15 chr6 110322356 110322621 -72092621 - AluSg SINE Alu -49 261 1 278 242 0 0 chr6 110322845 110322907 -72092335 + Tigger5 DNA MER2_type 2262 2323 0 261 191 127 16 chr6 110322986 110323049 -72092193 - MLT1G1 LTR MaLR -279 316 247 2544 178 55 52 chr6 110323062 110323729 -72091513 - L1M4c LINE L1 -4656 1728 1060 225 0 0 0 chr6 110324087 110324112 -72091130 + (TGG)n Simple_repeat Simple_repeat 3 27 0 2117 117 0 0 chr6 110324573 110324855 -72090387 + AluSx SINE Alu 24 305 -7 2248 66 42 0 chr6 110324855 110325142 -72090100 + AluY SINE Alu 1 299 -12 1934 131 0 4 chr6 110325256 110325530 -72089712 - AluSx SINE Alu -39 273 1 879 300 94 48 chr6 110325975 110326550 -72088692 - L2 LINE L2 0 3313 2709 261 98 0 0 chr6 110327135 110327176 -72088066 + (CA)n Simple_repeat Simple_repeat 2 42 0 771 218 0 48 chr6 110327258 110327464 -72087778 + L1MA6 LINE L1 5894 6089 -211 1264 167 85 14 chr6 110327469 110327751 -72087491 + MSTA LTR MaLR 1 302 -126 830 265 19 30 chr6 110327753 110328276 -72086966 - L1M3f LINE L1 -4095 2113 1555 1346 239 70 46 chr6 110328382 110328900 -72086342 - L1M3f LINE L1 -6493 537 8 5379 147 27 43 chr6 110329236 110330321 -72084921 - MER11C LTR ERVK -4 1067 1 374 272 64 17 chr6 110330423 110330658 -72084584 - L1ME LINE L1 -333 5788 5543 27 29 0 0 chr6 110330747 110330781 -72084461 + AT_rich Low_complexity Low_complexity 1 34 0 625 337 63 43 chr6 110331450 110332005 -72083237 - L1ME LINE L1 -1548 4598 4033 1106 193 0 14 chr6 110332531 110332744 -72082498 - MER6B DNA MER2_type 0 210 1 25 0 0 0 chr6 110332911 110332936 -72082306 + AT_rich Low_complexity Low_complexity 1 25 0 1058 161 17 0 chr6 110333784 110333964 -72081278 + THE1B LTR MaLR 1 183 -181 1740 154 0 0 chr6 110333971 110334256 -72080986 + THE1B-int LTR MaLR 1224 1508 -72 4371 47 0 7 chr6 110334264 110334856 -72080386 - L1P LINE L1 -743 5403 4816 5693 43 16 0 chr6 110334856 110335547 -72079695 + L1PA4 LINE L1 5449 6153 -2 544 62 0 0 chr6 110335548 110335629 -72079613 + THE1B-int LTR MaLR 1500 1580 0 1812 168 48 31 chr6 110335629 110335987 -72079255 + THE1B LTR MaLR 1 364 0 2115 288 115 25 chr6 110336686 110337527 -72077715 - L1M4b LINE L1 -5914 945 29 1212 289 155 22 chr6 110337600 110337865 -72077377 + L2 LINE L2 2460 2688 -625 2168 156 95 0 chr6 110337865 110338256 -72076986 + MSTA LTR MaLR 1 428 0 1212 289 155 22 chr6 110338256 110338758 -72076484 + L2 LINE L2 2688 3313 0 514 219 185 14 chr6 110339747 110339893 -72075349 + MER5A DNA MER1_type 18 188 -1 447 221 106 0 chr6 110339901 110340014 -72075228 + MER58A DNA MER1_type 1 125 0 2071 159 49 30 chr6 110340014 110340536 -72074706 + MLT2A2 LTR ERVL 1 554 0 601 151 0 0 chr6 110340536 110340627 -72074615 + MER58A DNA MER1_type 121 211 -13 229 237 34 17 chr6 110340954 110341013 -72074229 + L2 LINE L2 3205 3264 -8 324 241 85 42 chr6 110341128 110341263 -72073979 - MIR SINE MIR -63 145 19 273 272 26 9 chr6 110342099 110342213 -72073029 + LTR16C LTR ERVL 355 470 -21 275 224 51 119 chr6 110342251 110342586 -72072656 - L1M4 LINE L1 -1933 4711 4400 2041 123 123 3 chr6 110342615 110342996 -72072246 - MSTA LTR MaLR 0 428 2 262 319 51 37 chr6 110343150 110343366 -72071876 - MLT1H LTR MaLR -300 249 31 252 226 52 43 chr6 110343396 110343511 -72071731 - L1M4 LINE L1 -2234 4410 4295 1803 179 40 37 chr6 110343856 110344402 -72070840 + MLT2A2 LTR ERVL 3 554 0 2280 161 38 5 chr6 110344408 110344830 -72070412 + MLT1C LTR MaLR 29 464 -3 224 306 14 0 chr6 110345239 110345311 -72069931 - MIR SINE MIR -109 153 81 1825 159 34 41 chr6 110345343 110345664 -72069578 - L1PB4 LINE L1 -7 6149 5830 1722 170 38 14 chr6 110345664 110345953 -72069289 - AluJb SINE Alu -16 296 1 1825 159 34 41 chr6 110345953 110346045 -72069197 - L1PB4 LINE L1 -326 5830 5739 397 310 70 0 chr6 110346083 110346241 -72069001 + MER117 DNA MER1_type 1 169 -28 283 276 100 119 chr6 110346856 110346990 -72068252 - L2 LINE L2 0 3272 3137 2407 67 0 0 chr6 110346990 110347287 -72067955 - AluY SINE Alu -14 297 1 283 276 100 119 chr6 110347287 110347463 -72067779 - L2 LINE L2 -135 3137 2968 318 260 156 21 chr6 110348052 110348148 -72067094 - L2 LINE L2 -1 3271 3163 1213 238 125 14 chr6 110348605 110349029 -72066213 + MLT1H LTR MaLR 43 513 -36 1861 126 7 23 chr6 110349035 110349344 -72065898 - L1MC1 LINE L1 -9 6324 6021 400 284 71 31 chr6 110350561 110350786 -72064456 + MLT1K LTR MaLR 332 565 -23 7770 17 2 0 chr6 110351744 110352710 -72062532 + L1PA2 LINE L1 5188 6155 0 4279 232 125 29 chr6 110352720 110353232 -72062010 - L1MDa LINE L1 -4923 1617 1155 180 0 0 0 chr6 110353232 110353252 -72061990 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2139 94 3 24 chr6 110353254 110353552 -72061690 - AluSq SINE Alu -20 293 2 4279 232 125 29 chr6 110353552 110354498 -72060744 - L1MDa LINE L1 -5385 1155 16 1181 221 31 3 chr6 110354766 110355119 -72060123 - L1M4 LINE L1 -3034 3610 3248 2387 77 0 10 chr6 110355126 110355423 -72059819 - AluY SINE Alu -17 294 1 2418 218 26 69 chr6 110355427 110356144 -72059098 - L1M4 LINE L1 -4659 1987 1329 2205 107 7 0 chr6 110356144 110356433 -72058809 + AluSc SINE Alu 1 291 -18 2418 218 26 69 chr6 110356433 110356868 -72058374 - L1M4 LINE L1 -5317 1329 877 2078 129 10 7 chr6 110357382 110357676 -72057566 - AluSx SINE Alu -17 295 1 1962 108 3 46 chr6 110357787 110358093 -72057149 - AluSc SINE Alu -16 293 1 362 318 53 121 chr6 110358591 110358931 -72056311 + L2 LINE L2 2956 3272 0 365 261 49 33 chr6 110359027 110359211 -72056031 + L1ME4a LINE L1 5931 6117 -4 315 71 0 0 chr6 110359251 110359293 -72055949 + (TG)n Simple_repeat Simple_repeat 1 42 0 183 231 0 0 chr6 110359951 110359990 -72055252 - L2 LINE L2 -555 2759 2721 944 200 65 28 chr6 110360111 110360326 -72054916 - MIR SINE MIR 0 262 40 624 234 136 7 chr6 110360701 110360855 -72054387 - MER5A DNA MER1_type -15 174 1 21 36 0 0 chr6 110361245 110361273 -72053969 + AT_rich Low_complexity Low_complexity 1 28 0 2032 184 59 36 chr6 110361765 110361828 -72053414 + MLT1D LTR MaLR 1 61 -444 1836 163 39 64 chr6 110361828 110362234 -72053008 - MSTD LTR MaLR 0 396 1 2032 184 59 36 chr6 110362234 110362664 -72052578 + MLT1D LTR MaLR 61 505 0 472 291 73 36 chr6 110362671 110363084 -72052158 + L1ME4a LINE L1 5513 5940 -181 190 320 0 0 chr6 110363774 110363824 -72051418 + MIR SINE MIR 206 255 -7 709 188 127 35 chr6 110364447 110364644 -72050598 - MLT1I LTR MaLR 0 409 195 311 197 0 33 chr6 110364699 110364760 -72050482 + MER45 DNA AcHobo 1 59 -119 2579 53 0 0 chr6 110364764 110365066 -72050176 - AluY SINE Alu -9 302 1 3611 215 31 82 chr6 110365069 110367111 -72048131 - L1MC/D LINE L1 -670 5689 3763 4372 193 70 54 chr6 110367211 110368338 -72046904 + L1MCa LINE L1 474 1785 -4641 2150 141 0 0 chr6 110368338 110368635 -72046607 + AluSx SINE Alu 1 297 -15 4372 193 70 54 chr6 110368635 110369126 -72046116 + L1MCa LINE L1 1785 2267 -4159 582 147 10 0 chr6 110369149 110369251 -72045991 - L1PB1 LINE L1 -35 6116 6014 21 0 0 0 chr6 110369909 110369930 -72045312 + AT_rich Low_complexity Low_complexity 1 21 0 1075 267 54 21 chr6 110370063 110370454 -72044788 - L2 LINE L2 -274 3039 2633 528 125 0 0 chr6 110370990 110371070 -72044172 + MADE1 DNA Mariner 1 80 0 26 30 0 0 chr6 110371175 110371208 -72044034 + AT_rich Low_complexity Low_complexity 1 33 0 26 82 0 0 chr6 110372247 110372308 -72042934 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr6 110372570 110372593 -72042649 + AT_rich Low_complexity Low_complexity 1 23 0 248 224 30 0 chr6 110372708 110372775 -72042467 + (TA)n Simple_repeat Simple_repeat 1 69 0 1880 214 75 25 chr6 110372868 110373155 -72042087 - MLT1D LTR MaLR 0 505 182 1832 101 24 49 chr6 110373155 110373465 -72041777 - AluSx SINE Alu 0 306 4 1880 214 75 25 chr6 110373465 110373657 -72041585 - MLT1D LTR MaLR -323 182 1 21 71 0 0 chr6 110374236 110374278 -72040964 + AT_rich Low_complexity Low_complexity 1 42 0 286 170 38 28 chr6 110374560 110374666 -72040576 + (TATAA)n Simple_repeat Simple_repeat 2 108 0 367 295 9 9 chr6 110374850 110374955 -72040287 - L2 LINE L2 -1 3312 3208 273 278 87 43 chr6 110374955 110375070 -72040172 - MER63A DNA MER1_type 0 210 91 303 324 169 27 chr6 110375081 110375300 -72039942 - L2 LINE L2 -1822 1492 1243 335 304 84 69 chr6 110375310 110375715 -72039527 - LTR33 LTR ERVL -27 494 84 906 322 74 44 chr6 110375764 110376289 -72038953 - L2 LINE L2 -2070 1244 704 341 175 42 142 chr6 110376332 110376452 -72038790 - MLT2C2 LTR ERVL 0 464 357 635 224 13 0 chr6 110377076 110377232 -72038010 - L1MA10 LINE L1 -2 6332 6175 269 265 30 30 chr6 110377445 110377577 -72037665 - L1MDa LINE L1 -5084 1456 1325 289 416 64 12 chr6 110377874 110378203 -72037039 - L2 LINE L2 -379 2935 2590 257 346 37 22 chr6 110378378 110378514 -72036728 - L2 LINE L2 -684 2630 2493 686 206 7 29 chr6 110379392 110379650 -72035592 + CT-rich Low_complexity Low_complexity 1 252 0 25 31 0 0 chr6 110379828 110379860 -72035382 + AT_rich Low_complexity Low_complexity 1 32 0 242 304 245 16 chr6 110380415 110380672 -72034570 + L3 LINE CR1 1203 1518 -59 538 227 116 17 chr6 110381444 110381616 -72033626 + MER5A DNA MER1_type 1 189 0 755 161 23 78 chr6 110381793 110381997 -72033245 + MER39B LTR ERV1 6 246 -461 1781 138 3 52 chr6 110382026 110382353 -72032889 + L1MA7 LINE L1 5398 5708 -583 2779 152 30 26 chr6 110382492 110383057 -72032185 + L1MA7 LINE L1 5720 6286 -5 3002 149 14 12 chr6 110383093 110383590 -72031652 + MER39 LTR ERV1 210 707 0 2164 116 0 3 chr6 110384127 110384429 -72030813 + AluSg SINE Alu 1 301 -9 1389 128 14 28 chr6 110385644 110385862 -72029380 - AluJo SINE Alu -95 217 3 2227 105 0 0 chr6 110385926 110386220 -72029022 - AluSg SINE Alu -14 296 3 1807 97 97 0 chr6 110386633 110386892 -72028350 + AluSx SINE Alu 1 284 -28 716 176 48 53 chr6 110387319 110387507 -72027735 - MER5A DNA MER1_type -2 187 1 762 168 0 142 chr6 110387829 110387960 -72027282 - AluJb SINE Alu -10 302 205 594 60 0 0 chr6 110387960 110388043 -72027199 - L1PB1 LINE L1 0 6151 6069 762 168 0 142 chr6 110388043 110388101 -72027141 - AluJb SINE Alu -107 205 140 1479 246 64 16 chr6 110388120 110388555 -72026687 - MLT1C LTR MaLR -1 466 11 453 204 78 131 chr6 110388699 110388890 -72026352 + MER5A DNA MER1_type 9 189 0 507 315 98 54 chr6 110388904 110389773 -72025469 - L1M4 LINE L1 -1252 4894 3982 522 309 76 7 chr6 110389798 110390089 -72025153 - HAL1 LINE L1 -961 1546 1236 263 246 21 21 chr6 110390184 110390305 -72024937 - L1MDa LINE L1 -5111 1419 1296 804 180 17 45 chr6 110390437 110390615 -72024627 - MER5B DNA MER1_type -4 174 2 421 301 18 0 chr6 110391332 110391495 -72023747 + L1M4 LINE L1 4931 5096 -1050 1923 160 28 22 chr6 110393211 110393573 -72021669 + THE1B LTR MaLR 1 364 0 11417 100 6 1 chr6 110393573 110395146 -72020096 + THE1B-int LTR MaLR 1 1580 0 2098 150 28 19 chr6 110395146 110395507 -72019735 + THE1B LTR MaLR 1 364 0 23 54 0 0 chr6 110396556 110396593 -72018649 + AT_rich Low_complexity Low_complexity 1 37 0 1643 238 82 21 chr6 110396607 110397035 -72018207 + MLT2B1 LTR ERVL 1 454 -66 1788 175 7 0 chr6 110397092 110397412 -72017830 + AluSx SINE Alu 1 322 0 234 128 0 154 chr6 110397421 110397454 -72017788 + MLT2B1 LTR ERVL 455 471 -49 264 30 0 0 chr6 110397454 110397487 -72017755 + (TG)n Simple_repeat Simple_repeat 2 34 0 234 128 0 154 chr6 110397487 110397531 -72017711 + MLT2B1 LTR ERVL 471 520 0 1846 185 5 44 chr6 110397611 110398021 -72017221 - L1MC1 LINE L1 -11 6322 5929 1765 180 58 0 chr6 110398439 110398766 -72016476 + MER7A DNA MER2_type 3 346 0 983 197 165 16 chr6 110398777 110399031 -72016211 - AluJb SINE Alu -9 293 2 257 394 98 8 chr6 110402152 110402284 -72012958 - L2 LINE L2 -13 3259 3116 201 74 0 0 chr6 110405707 110405734 -72009508 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 261 358 47 36 chr6 110405760 110405992 -72009250 + L2 LINE L2 1711 1950 -1364 2227 103 0 0 chr6 110405992 110406284 -72008958 - AluSx SINE Alu -20 292 1 261 358 47 36 chr6 110406284 110406411 -72008831 + L2 LINE L2 1950 2074 -1240 648 249 130 0 chr6 110406523 110406708 -72008534 + MER3 DNA MER1_type 1 209 0 229 204 61 0 chr6 110406666 110406715 -72008527 - MER3 DNA MER1_type -117 92 41 * 225 292 180 78 chr6 110406719 110407246 -72007996 + L2 LINE L2 2287 2867 -447 514 207 138 0 chr6 110407554 110407670 -72007572 + MER69A DNA AcHobo 20 151 -26 4489 142 21 4 chr6 110408361 110409087 -72006155 + Tigger2 DNA MER2_type 9 746 -1972 1127 126 31 129 chr6 110409151 110409437 -72005805 + Tigger2 DNA MER2_type 2451 2708 -10 2000 279 69 56 chr6 110409857 110410623 -72004619 - MER21B LTR ERV1 -69 794 19 272 281 0 0 chr6 110410644 110410699 -72004543 - MER21B LTR ERV1 -773 90 33 1606 141 67 4 chr6 110410699 110410969 -72004273 + AluSx SINE Alu 5 291 -21 543 165 0 10 chr6 110411029 110411132 -72004110 - Ricksha DNA DNA -651 2600 2499 * 813 199 70 2 chr6 110411129 110411440 -72003802 - Ricksha DNA DNA -2835 411 1 27 62 0 0 chr6 110411440 110411488 -72003754 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr6 110412965 110412986 -72002256 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr6 110413030 110413073 -72002169 + AT_rich Low_complexity Low_complexity 1 43 0 456 252 63 13 chr6 110414346 110414505 -72000737 - LTR43 LTR ERV1 -281 321 155 512 235 61 9 chr6 110414813 110414928 -72000314 - FLAM_C SINE Alu -22 121 1 22 35 0 0 chr6 110414964 110414993 -72000249 + AT_rich Low_complexity Low_complexity 1 29 0 193 317 0 0 chr6 110415341 110415382 -71999860 - MIR SINE MIR -90 118 78 625 274 57 6 chr6 110415391 110415566 -71999676 + MIR SINE MIR 52 235 -27 359 252 37 19 chr6 110416131 110416238 -71999004 - Zaphod DNA AcHobo -3754 277 169 22 35 0 0 chr6 110416305 110416334 -71998908 + AT_rich Low_complexity Low_complexity 1 29 0 1882 124 3 31 chr6 110416431 110416775 -71998467 + AluSg SINE Alu 1 336 0 2593 158 77 1 chr6 110417035 110417680 -71997562 - L1PBa LINE L1 -3534 3328 2635 362 295 115 30 chr6 110418221 110418545 -71996697 - L1 LINE L1 -1294 4852 4502 570 331 66 15 chr6 110419173 110419445 -71995797 - MLT1J2 LTR MaLR -4 446 161 261 305 21 11 chr6 110419457 110419552 -71995690 - MLT1J1 LTR MaLR -350 96 1 1468 117 156 0 chr6 110419644 110419901 -71995341 + AluSg SINE Alu 1 297 -3 628 313 83 22 chr6 110420166 110420585 -71994657 - MLT2F LTR ERVL -203 460 10 2007 136 7 0 chr6 110420781 110421082 -71994160 + AluSq SINE Alu 3 305 -8 23 0 0 0 chr6 110421168 110421191 -71994051 + AT_rich Low_complexity Low_complexity 1 23 0 405 236 45 0 chr6 110422221 110422378 -71992864 + (TA)n Simple_repeat Simple_repeat 1 164 0 21 0 0 0 chr6 110423176 110423197 -71992045 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr6 110423316 110423354 -71991888 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr6 110423386 110423410 -71991832 + AT_rich Low_complexity Low_complexity 1 24 0 2168 108 3 3 chr6 110423440 110423735 -71991507 + AluSc SINE Alu 1 295 -14 31 26 0 0 chr6 110423784 110423822 -71991420 + AT_rich Low_complexity Low_complexity 1 38 0 403 255 37 11 chr6 110424251 110424439 -71990803 + LTR37A LTR ERV1 234 426 0 25 65 0 0 chr6 110424706 110424752 -71990490 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr6 110425900 110425921 -71989321 + AT_rich Low_complexity Low_complexity 1 21 0 478 228 14 41 chr6 110426859 110427055 -71988187 - LTR41 LTR ERVL 0 795 585 1698 174 40 35 chr6 110427744 110428117 -71987125 + THE1C LTR MaLR 1 375 0 324 319 0 0 chr6 110428467 110428561 -71986681 + L1MC4 LINE L1 6610 6703 -1339 198 167 0 0 chr6 110428562 110428598 -71986644 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 214 259 103 0 chr6 110428672 110428730 -71986512 + L2 LINE L2 3172 3235 -37 2051 136 0 10 chr6 110428756 110429057 -71986185 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr6 110429891 110429914 -71985328 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 317 218 55 94 chr6 110430800 110430843 -71984399 + L1M4 LINE L1 3784 3827 -2319 8529 105 7 2 chr6 110430843 110432909 -71982333 + L1PA7 LINE L1 4077 6154 0 317 218 55 94 chr6 110432909 110433067 -71982175 + L1M4 LINE L1 3827 3977 -2169 21 71 0 0 chr6 110433095 110433137 -71982105 + AT_rich Low_complexity Low_complexity 1 42 0 552 314 130 20 chr6 110433174 110433613 -71981629 + L1M4 LINE L1 4071 4557 -1589 2182 268 59 15 chr6 110434745 110435299 -71979943 - L1ME2 LINE L1 -10 6154 5547 2636 154 17 0 chr6 110435299 110435720 -71979522 + MSTA LTR MaLR 1 428 0 2182 268 59 15 chr6 110435720 110436028 -71979214 - L1ME2 LINE L1 -617 5547 5254 2017 115 6 32 chr6 110436681 110436995 -71978247 + AluSg SINE Alu 1 306 -4 1510 221 144 13 chr6 110437230 110437688 -71977554 - MLT2B1 LTR ERVL 0 520 3 1906 162 14 10 chr6 110440476 110440773 -71974469 - AluJb SINE Alu -9 303 6 441 292 7 13 chr6 110440803 110440957 -71974285 - MLT1I LTR MaLR -256 153 1 867 245 155 31 chr6 110442140 110442528 -71972714 + LTR16A1 LTR ERVL 6 441 -16 268 333 162 8 chr6 110444333 110444450 -71970792 - MIR3 SINE MIR -64 144 10 589 197 146 39 chr6 110444599 110444832 -71970410 + LOR1a LTR ERV1 240 497 0 1429 236 38 33 chr6 110445338 110445758 -71969484 + LTR16C LTR ERVL 70 491 0 221 269 60 30 chr6 110446974 110447041 -71968201 - MIR SINE MIR -87 175 107 1145 253 88 62 chr6 110447148 110447682 -71967560 - MLT1H LTR MaLR 0 549 2 191 274 65 0 chr6 110448465 110448527 -71966715 - MIR3 SINE MIR -9 199 134 213 273 18 0 chr6 110448531 110448586 -71966656 - MER5C DNA MER1_type -268 56 1 551 258 138 63 chr6 110448621 110448889 -71966353 + MER115 DNA AcHobo 119 406 -287 182 242 15 0 chr6 110449721 110449787 -71965455 + (CA)n Simple_repeat Simple_repeat 2 68 0 2240 137 97 8 chr6 110450870 110451166 -71964076 - MSTC LTR MaLR 0 428 87 2550 59 0 3 chr6 110451166 110451472 -71963770 - AluY SINE Alu -6 305 1 2240 137 97 8 chr6 110451472 110451568 -71963674 - MSTC LTR MaLR -341 87 1 1209 271 75 0 chr6 110453505 110453881 -71961361 - LTR16C LTR ERVL -3 488 85 2251 93 31 3 chr6 110454700 110454990 -71960252 + AluSx SINE Alu 1 298 -14 285 113 141 14 chr6 110455107 110455178 -71960064 + L1MB3 LINE L1 6103 6182 -1 190 188 0 31 chr6 110456352 110456416 -71958826 + CT-rich Low_complexity Low_complexity 3 64 0 345 302 237 0 chr6 110456795 110456934 -71958308 - MER5A DNA MER1_type 0 189 18 581 249 85 6 chr6 110456958 110457123 -71958119 - MER5B DNA MER1_type 0 178 1 255 200 15 0 chr6 110457577 110457642 -71957600 + MER116 DNA Mariner 1 66 -14 337 267 12 23 chr6 110458077 110458163 -71957079 - L2 LINE L2 0 3272 3188 578 218 190 0 chr6 110458223 110458402 -71956840 - LTR16A LTR ERVL 0 450 238 1058 218 61 51 chr6 110458451 110458846 -71956396 - Charlie4a DNA MER1_type -85 423 25 2448 60 16 0 chr6 110459109 110459424 -71955818 - L1PA7 LINE L1 0 6154 5835 698 73 73 0 chr6 110459424 110459534 -71955708 + L1PA7 LINE L1 5728 5845 -327 275 263 26 0 chr6 110459984 110460060 -71955182 + MLT1I LTR MaLR 60 137 -272 236 230 103 11 chr6 110460249 110460336 -71954906 + MLT1I LTR MaLR 290 384 -25 334 280 112 9 chr6 110460629 110460736 -71954506 - L2 LINE L2 -8 3305 3188 780 269 143 36 chr6 110461381 110461592 -71953650 - MLT1J LTR MaLR -36 475 288 1813 155 59 0 chr6 110461592 110461882 -71953360 + AluJb SINE Alu 1 307 -5 780 269 143 36 chr6 110461882 110462078 -71953164 - MLT1J LTR MaLR -223 288 23 355 292 118 48 chr6 110462078 110462393 -71952849 - MLT1I LTR MaLR 0 409 73 187 351 96 21 chr6 110463308 110463402 -71951840 - L2 LINE L2 -17 3255 3155 29 60 0 0 chr6 110463460 110463510 -71951732 + AT_rich Low_complexity Low_complexity 1 50 0 2313 113 0 0 chr6 110463765 110464076 -71951166 - AluSq SINE Alu -2 311 1 21 0 0 0 chr6 110464137 110464158 -71951084 + AT_rich Low_complexity Low_complexity 1 21 0 4098 170 12 35 chr6 110464769 110465647 -71949595 - L1MB8 LINE L1 -11 6167 5310 980 231 30 36 chr6 110465648 110465985 -71949257 - L1MB8 LINE L1 -962 5184 4850 1584 219 39 9 chr6 110465993 110466532 -71948710 - L1MB8 LINE L1 -2797 3349 2795 422 191 28 51 chr6 110516554 110516732 -71898510 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 464 157 39 56 chr6 110516782 110516960 -71898282 + (TATAG)n Simple_repeat Simple_repeat 2 176 0 249 33 0 0 chr6 110517005 110517035 -71898207 + (GA)n Simple_repeat Simple_repeat 2 31 0 1253 219 22 33 chr6 110517035 110517309 -71897933 - AluJo SINE Alu -39 273 3 567 294 81 15 chr6 110517317 110517798 -71897444 + L1ME3 LINE L1 5090 5606 -558 340 259 29 29 chr6 110517877 110518016 -71897226 + MLT1G3 LTR MaLR 43 181 -349 371 232 195 56 chr6 110518186 110518488 -71896754 + L1ME3 LINE L1 5646 5989 -173 188 258 135 11 chr6 110518507 110518596 -71896646 + MIR SINE MIR 131 230 -32 24 0 0 0 chr6 110519498 110519522 -71895720 + AT_rich Low_complexity Low_complexity 1 24 0 493 286 65 54 chr6 110519705 110519999 -71895243 + HAL1 LINE L1 757 1053 -1454 6012 123 3 0 chr6 110520109 110521007 -71894235 + L1PA12 LINE L1 5255 6155 -13 1667 129 168 60 chr6 110521122 110521508 -71893734 + MSTA LTR MaLR 1 428 0 256 189 14 27 chr6 110521859 110521933 -71893309 + (TA)n Simple_repeat Simple_repeat 1 73 0 26 64 0 0 chr6 110522280 110522327 -71892915 + AT_rich Low_complexity Low_complexity 1 47 0 304 263 72 40 chr6 110522490 110522642 -71892600 + L1ME3 LINE L1 4456 4612 -1534 294 213 0 111 chr6 110522670 110522778 -71892464 - MLT1E2 LTR MaLR -442 184 89 439 243 48 48 chr6 110522778 110522984 -71892258 + L1ME3 LINE L1 5776 5981 -181 27 0 0 0 chr6 110523091 110523118 -71892124 + AT_rich Low_complexity Low_complexity 1 27 0 1000 251 67 92 chr6 110523433 110523943 -71891299 - MLT1D LTR MaLR -8 497 1 263 288 12 0 chr6 110524979 110525059 -71890183 + (TA)n Simple_repeat Simple_repeat 1 81 0 1485 174 79 9 chr6 110525624 110525941 -71889301 - MER61A LTR ERV1 -3 340 2 6979 117 49 4 chr6 110525942 110527005 -71888237 - MER61A-int LTR ERV1 0 5217 4107 11480 82 10 38 chr6 110527105 110528810 -71886432 - MER61A-int LTR ERV1 -1100 4117 2461 971 176 56 25 chr6 110528808 110529240 -71886002 - MER61A-int LTR ERV1 -4731 486 3 * 1734 177 12 17 chr6 110529242 110529587 -71885655 - MER61A LTR ERV1 0 343 1 777 370 86 5 chr6 110530322 110530755 -71884487 - L2 LINE L2 -16 3297 2830 555 251 63 21 chr6 110530983 110531222 -71884020 + L1M4 LINE L1 4119 4367 -1779 487 253 142 40 chr6 110531228 110531481 -71883761 + L1M4 LINE L1 4539 4817 -1329 1279 289 90 16 chr6 110531501 110532148 -71883094 - L1M4 LINE L1 -2064 4082 3388 564 248 83 21 chr6 110532153 110532395 -71882847 - MER58 DNA MER1_type 0 2420 130 * 955 234 151 40 chr6 110532394 110532719 -71882523 - Cheshire DNA MER1_type -2059 361 1 33 80 0 0 chr6 110532880 110532955 -71882287 + AT_rich Low_complexity Low_complexity 1 75 0 28 91 0 0 chr6 110533491 110533568 -71881674 + AT_rich Low_complexity Low_complexity 1 77 0 21 36 0 0 chr6 110533592 110533620 -71881622 + AT_rich Low_complexity Low_complexity 1 28 0 616 301 67 27 chr6 110534223 110534522 -71880720 + MER46C DNA MER2_type 19 329 -9 330 67 0 0 chr6 110534897 110534942 -71880300 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 589 392 32 37 chr6 110534959 110535400 -71879842 - L2 LINE L2 -250 3022 2580 240 200 0 0 chr6 110535426 110535481 -71879761 + (TA)n Simple_repeat Simple_repeat 1 55 0 1702 198 91 50 chr6 110535607 110536091 -71879151 - MER67D LTR ERV1 -4 510 7 223 328 108 32 chr6 110536563 110536813 -71878429 - L2 LINE L2 -2896 418 150 565 343 107 49 chr6 110537423 110538628 -71876614 - L2 LINE L2 -933 2381 1107 290 355 71 0 chr6 110538866 110539007 -71876235 - L2 LINE L2 -3 3310 3160 29 28 0 0 chr6 110539625 110539661 -71875581 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr6 110539796 110539822 -71875420 + AT_rich Low_complexity Low_complexity 1 26 0 856 234 176 85 chr6 110539871 110540416 -71874826 - MLT1G3 LTR MaLR 0 530 5 26 30 0 0 chr6 110541423 110541456 -71873786 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr6 110541746 110541774 -71873468 + AT_rich Low_complexity Low_complexity 1 28 0 22 94 0 0 chr6 110542075 110542139 -71873103 + AT_rich Low_complexity Low_complexity 1 64 0 200 93 0 70 chr6 110543359 110543402 -71871840 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 625 144 29 0 chr6 110546376 110546550 -71868692 + (TA)n Simple_repeat Simple_repeat 1 179 0 840 173 208 22 chr6 110546800 110547026 -71868216 + MSTA LTR MaLR 159 426 -2 2319 225 60 32 chr6 110547028 110547659 -71867583 - L1MC3 LINE L1 -531 7254 6606 12184 157 26 21 chr6 110547659 110549871 -71865371 + Tigger1 DNA MER2_type 1 2223 -195 1336 229 7 23 chr6 110549879 110550185 -71865057 - AluJo SINE Alu -3 309 9 299 181 0 138 chr6 110550187 110550281 -71864961 + Tigger1 DNA MER2_type 2233 2313 -105 2710 111 38 13 chr6 110550291 110550740 -71864502 - L1PA16 LINE L1 0 6166 5707 1141 217 96 24 chr6 110550742 110551279 -71863963 - L1MC3 LINE L1 -743 5403 5028 268 236 16 88 chr6 110551463 110551645 -71863597 - L1MC5 LINE L1 -178 7783 7615 222 37 0 0 chr6 110551754 110551781 -71863461 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 258 233 17 0 chr6 110551791 110551851 -71863391 - L1MC5 LINE L1 -519 7442 7382 1562 192 3 19 chr6 110551867 110552184 -71863058 + AluJo SINE Alu 1 312 0 8876 216 36 30 chr6 110552497 110554249 -71860993 + L1PA15 LINE L1 2672 4413 -1752 216 0 0 0 chr6 110554249 110554273 -71860969 + (CA)n Simple_repeat Simple_repeat 2 25 0 8876 216 36 30 chr6 110554273 110556002 -71859240 + L1PA15 LINE L1 4413 6165 0 2769 158 36 61 chr6 110556005 110556905 -71858337 + L1M1 LINE L1 4623 5492 -743 302 80 0 0 chr6 110556905 110556954 -71858288 + L1MA3 LINE L1 6256 6305 0 265 279 94 44 chr6 110557228 110557779 -71857463 - L1M4 LINE L1 -2451 3695 3117 2213 122 0 0 chr6 110557902 110558206 -71857036 - AluSc SINE Alu -5 304 1 35 0 0 0 chr6 110558215 110558250 -71856992 + AT_rich Low_complexity Low_complexity 1 35 0 2373 73 0 10 chr6 110558798 110559112 -71856130 + AluY SINE Alu 1 311 0 206 243 14 0 chr6 110559410 110559480 -71855762 + (TA)n Simple_repeat Simple_repeat 1 71 0 517 259 43 6 chr6 110560353 110560515 -71854727 + L1M4 LINE L1 4718 4885 -1261 6149 216 40 3 chr6 110560526 110562202 -71853040 + L1P4 LINE L1 3784 5514 -652 21 36 0 0 chr6 110562956 110562984 -71852258 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 110563145 110563167 -71852075 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 110564022 110564052 -71851190 + AT_rich Low_complexity Low_complexity 1 30 0 229 172 35 0 chr6 110564944 110565002 -71850240 + (TA)n Simple_repeat Simple_repeat 1 60 0 2028 138 0 0 chr6 110565334 110565630 -71849612 + AluSx SINE Alu 3 298 -14 239 186 17 0 chr6 110565753 110565812 -71849430 + L1MC4 LINE L1 6648 6707 -1335 551 75 0 0 chr6 110568227 110568307 -71846935 - AluY SINE Alu 0 309 230 1589 67 10 0 chr6 110568307 110568501 -71846741 - AluY SINE Alu -115 196 1 27 49 0 0 chr6 110569260 110569301 -71845941 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr6 110569621 110569642 -71845600 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 110570135 110570157 -71845085 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 110570636 110570659 -71844583 + AT_rich Low_complexity Low_complexity 1 23 0 513 277 11 64 chr6 110572546 110572734 -71842508 - MIR SINE MIR -45 217 40 406 348 87 30 chr6 110573153 110573923 -71841319 + L1MEd LINE L1 442 1255 -4864 1572 190 21 0 chr6 110574342 110574660 -71840582 - AluJb SINE Alu 0 324 1 282 186 46 40 chr6 110574973 110575065 -71840177 + MLT1J LTR MaLR 72 268 -304 24 32 0 0 chr6 110575927 110575958 -71839284 + AT_rich Low_complexity Low_complexity 1 31 0 258 142 60 8 chr6 110576025 110576159 -71839083 + (TA)n Simple_repeat Simple_repeat 1 141 0 5125 168 15 18 chr6 110576694 110578211 -71837031 - L1PB3 LINE L1 -7 6147 4630 399 182 68 0 chr6 110579709 110579797 -71835445 - L1MC4 LINE L1 -1003 7039 6946 408 223 54 0 chr6 110579812 110579924 -71835318 - L1MA8 LINE L1 -1 6290 6173 490 282 125 36 chr6 110579924 110580204 -71835038 - L1MC4a LINE L1 -977 6831 6612 198 192 0 0 chr6 110580210 110580262 -71834980 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 30 59 0 0 chr6 110580276 110580327 -71834915 + AT_rich Low_complexity Low_complexity 1 51 0 493 319 38 22 chr6 110580340 110580597 -71834645 - L1MC4a LINE L1 -1242 6566 6336 1974 178 18 52 chr6 110580641 110581080 -71834162 + Tigger2a DNA MER2_type 10 433 -1 1949 202 9 5 chr6 110581266 110581692 -71833550 + L1MA4 LINE L1 5865 6292 -8 1738 180 54 17 chr6 110582615 110582965 -71832277 - THE1B LTR MaLR 0 364 2 10856 118 2 4 chr6 110582966 110584548 -71830694 - THE1B-int LTR MaLR 0 1580 1 1984 145 42 25 chr6 110584548 110584897 -71830345 - THE1B LTR MaLR 0 364 20 293 310 29 17 chr6 110586500 110586674 -71828568 - L1ME3 LINE L1 -234 5928 5753 1100 242 44 36 chr6 110588576 110588960 -71826282 + MLT1B LTR MaLR 4 390 0 485 209 7 68 chr6 110589822 110589970 -71825272 - L1MB8 LINE L1 -12 6166 6028 882 280 115 58 chr6 110589994 110590022 -71825220 + L1MCb LINE L1 4 29 -6016 356 0 0 22 chr6 110590022 110590067 -71825175 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1900 148 0 11 chr6 110590069 110590352 -71824890 - AluSx SINE Alu -31 281 2 882 280 115 58 chr6 110590352 110590885 -71824357 + L1MCb LINE L1 29 600 -5445 26 30 0 0 chr6 110590985 110591018 -71824224 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr6 110591117 110591152 -71824090 + AT_rich Low_complexity Low_complexity 1 35 0 213 39 0 0 chr6 110591892 110591918 -71823324 + (ATG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr6 110591970 110591998 -71823244 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 110592018 110592046 -71823196 + AT_rich Low_complexity Low_complexity 1 28 0 457 259 97 40 chr6 110593116 110593363 -71821879 + MIR SINE MIR 2 262 0 404 283 67 0 chr6 110593608 110593728 -71821514 - MIR SINE MIR -49 213 86 187 424 0 0 chr6 110593809 110593875 -71821367 - L2 LINE L2 -86 3186 3121 2361 143 27 62 chr6 110594031 110594480 -71820762 - Tigger2a DNA MER2_type 0 434 2 21 36 0 0 chr6 110594527 110594555 -71820687 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr6 110594954 110594988 -71820254 + AT_rich Low_complexity Low_complexity 1 34 0 2688 156 70 28 chr6 110595025 110595557 -71819685 - MER52A LTR ERV1 0 1755 1202 4782 238 14 21 chr6 110595562 110596741 -71818501 + L1PBa LINE L1 474 1644 -5219 * 4986 191 28 15 chr6 110596712 110597657 -71817585 + L1PB2 LINE L1 12 968 -5236 6855 188 16 9 chr6 110597659 110599858 -71815384 + L1PB2 LINE L1 3773 5985 -223 2189 129 17 0 chr6 110599836 110600185 -71815057 - L1M1 LINE L1 -5121 2444 2090 * 191 339 136 30 chr6 110600758 110600994 -71814248 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 110601246 110601267 -71813975 + AT_rich Low_complexity Low_complexity 1 21 0 1789 114 28 3 chr6 110603061 110603351 -71811891 - L1MA2 LINE L1 -1 6303 6007 430 295 86 38 chr6 110604113 110604323 -71810919 - MER106A DNA MER1_type -11 225 6 24 32 0 0 chr6 110604755 110604786 -71810456 + AT_rich Low_complexity Low_complexity 1 31 0 375 269 39 15 chr6 110605146 110605276 -71809966 - MER94 DNA DNA -1 133 1 23 68 0 0 chr6 110607110 110607154 -71808088 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr6 110608106 110608131 -71807111 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 110608460 110608495 -71806747 + AT_rich Low_complexity Low_complexity 1 35 0 673 242 62 56 chr6 110609285 110609607 -71805635 + MER33 DNA MER1_type 1 324 0 840 304 49 80 chr6 110609782 110610255 -71804987 + MLT1H LTR MaLR 35 492 -57 23 68 0 0 chr6 110610443 110610487 -71804755 + AT_rich Low_complexity Low_complexity 1 44 0 369 239 108 54 chr6 110610631 110610798 -71804444 - MIR SINE MIR -74 188 13 2199 60 50 0 chr6 110611116 110611273 -71803969 - AluY SINE Alu -15 296 117 207 0 0 0 chr6 110611273 110611296 -71803946 + (TG)n Simple_repeat Simple_repeat 2 24 0 2199 60 50 0 chr6 110611296 110611420 -71803822 - AluY SINE Alu -194 117 1 245 53 0 92 chr6 110612777 110612853 -71802389 + (TA)n Simple_repeat Simple_repeat 2 70 0 758 156 0 29 chr6 110612916 110613089 -71802153 + CT-rich Low_complexity Low_complexity 1 168 0 321 100 0 20 chr6 110613089 110613139 -71802103 + (TTCCC)n Simple_repeat Simple_repeat 4 52 0 750 81 27 27 chr6 110613144 110613292 -71801950 + (TTCC)n Simple_repeat Simple_repeat 1 148 0 473 332 17 34 chr6 110613292 110613590 -71801652 + HAL1b LINE L1 226 518 -830 645 325 157 35 chr6 110614387 110614897 -71800345 + L2 LINE L2 2241 2812 -502 29 47 0 0 chr6 110615181 110615224 -71800018 + AT_rich Low_complexity Low_complexity 1 43 0 33 0 0 0 chr6 110615560 110615593 -71799649 + AT_rich Low_complexity Low_complexity 1 33 0 340 307 82 43 chr6 110615653 110616090 -71799152 - L1ME4a LINE L1 -72 6049 5596 23 78 0 0 chr6 110616098 110616149 -71799093 + AT_rich Low_complexity Low_complexity 1 51 0 2178 114 16 0 chr6 110617978 110618284 -71796958 - AluSp SINE Alu -2 311 1 398 262 64 91 chr6 110618495 110618682 -71796560 + L2 LINE L2 2526 2707 -607 22 56 0 0 chr6 110618923 110618959 -71796283 + AT_rich Low_complexity Low_complexity 1 36 0 265 247 14 0 chr6 110619199 110619272 -71795970 - L1ME2 LINE L1 -179 5985 5912 * 1829 273 52 43 chr6 110619253 110620239 -71795003 - L1ME2 LINE L1 -1203 4943 3949 958 201 0 16 chr6 110620263 110620447 -71794795 - AluJ SINE Alu -7 305 125 252 247 0 0 chr6 110620451 110620536 -71794706 + (TA)n Simple_repeat Simple_repeat 1 85 0 606 213 0 50 chr6 110620536 110620677 -71794565 - AluJ SINE Alu -178 134 1 2525 208 108 117 chr6 110620793 110621372 -71793870 - L1MC3 LINE L1 -2 7783 7131 255 314 35 0 chr6 110621372 110621458 -71793784 - MLT1F1 LTR MaLR -444 123 35 2525 208 108 117 chr6 110621458 110621897 -71793345 - L1MC3 LINE L1 -654 7131 6690 3963 247 24 22 chr6 110621908 110623613 -71791629 + L1PA12 LINE L1 1796 3516 -4068 267 281 0 0 chr6 110623612 110623676 -71791566 + L1PA12 LINE L1 3984 4047 -3537 * 1754 178 0 7 chr6 110623679 110623960 -71791282 + AluSx SINE Alu 1 279 -33 278 211 0 53 chr6 110623962 110624057 -71791185 - L1MC4 LINE L1 -1339 6703 6614 720 174 0 0 chr6 110624067 110624222 -71791020 + (TA)n Simple_repeat Simple_repeat 2 156 0 246 204 0 0 chr6 110624223 110624277 -71790965 - L1MC4 LINE L1 -1340 6702 6649 1407 180 4 8 chr6 110624345 110624612 -71790630 + AluSx SINE Alu 3 268 -44 1768 229 79 153 chr6 110624776 110625089 -71790153 - L1MD3 LINE L1 -371 7671 7336 256 303 98 0 chr6 110625089 110625211 -71790031 - MLT1F1 LTR MaLR -433 134 1 1768 229 79 153 chr6 110625211 110625932 -71789310 - L1MD3 LINE L1 -706 7336 6586 994 274 59 15 chr6 110625918 110626929 -71788313 - L1M4 LINE L1 -2382 3764 2653 * 903 251 19 8 chr6 110627090 110627349 -71787893 + Charlie4 DNA MER1_type 2 263 -1698 183 390 21 35 chr6 110627399 110627540 -71787702 + L2 LINE L2 2619 2757 -557 587 243 154 81 chr6 110627835 110628230 -71787012 - LTR1B LTR ERV1 0 826 403 5730 14 10 0 chr6 110628230 110628925 -71786317 + L1PA3 LINE L1 5228 5928 -227 1423 219 68 51 chr6 110629137 110629608 -71785634 - MLT1D LTR MaLR 0 505 27 361 352 70 16 chr6 110630706 110630962 -71784280 - MLT1I LTR MaLR -50 359 90 213 360 0 0 chr6 110631213 110631302 -71783940 - MIR3 SINE MIR -3 205 117 1821 152 7 7 chr6 110631491 110631787 -71783455 + AluSx SINE Alu 7 302 -10 28 0 0 0 chr6 110632726 110632754 -71782488 + AT_rich Low_complexity Low_complexity 1 28 0 21 89 0 0 chr6 110633010 110633066 -71782176 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr6 110633948 110633978 -71781264 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr6 110634098 110634128 -71781114 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr6 110634363 110634394 -71780848 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 110634524 110634545 -71780697 + AT_rich Low_complexity Low_complexity 1 21 0 888 328 26 38 chr6 110634734 110635155 -71780087 - MLT1J1 LTR MaLR -2 444 29 24 85 0 0 chr6 110635465 110635524 -71779718 + AT_rich Low_complexity Low_complexity 1 59 0 4171 222 52 16 chr6 110635592 110637124 -71778118 - L1MA10 LINE L1 -3 6331 4755 1021 216 97 0 chr6 110637124 110637266 -71777976 + L1 LINE L1 4088 4215 -1931 189 0 0 0 chr6 110637266 110637287 -71777955 + (CA)n Simple_repeat Simple_repeat 2 22 0 1021 216 97 0 chr6 110637287 110637422 -71777820 + L1 LINE L1 4215 4392 -1754 292 280 114 23 chr6 110637814 110637946 -71777296 - MLT1J2 LTR MaLR -204 246 103 6051 162 38 39 chr6 110638381 110639535 -71775707 + L1PA8 LINE L1 8 1160 -5301 8573 118 19 6 chr6 110639535 110641723 -71773519 + L1PA8 LINE L1 4307 6483 -4 2182 104 13 10 chr6 110641723 110642032 -71773210 + AluSp SINE Alu 1 310 -3 23 0 0 0 chr6 110642256 110642279 -71772963 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr6 110642347 110642374 -71772868 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr6 110642833 110642856 -71772386 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 369 322 27 40 chr6 110644638 110644787 -71770455 - MIR SINE MIR -84 178 32 216 185 15 31 chr6 110645320 110645385 -71769857 + (TA)n Simple_repeat Simple_repeat 1 64 0 21 36 0 0 chr6 110645442 110645470 -71769772 + AT_rich Low_complexity Low_complexity 1 28 0 2030 122 0 0 chr6 110646627 110646915 -71768327 - AluSx SINE Alu -19 293 6 263 93 23 0 chr6 110647358 110647401 -71767841 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 22 0 0 0 chr6 110647648 110647670 -71767572 + AT_rich Low_complexity Low_complexity 1 22 0 6645 249 38 17 chr6 110649099 110652631 -71762611 - L1MC1 LINE L1 -6 6261 2650 1301 116 45 0 chr6 110652643 110652841 -71762401 - MLT2A2 LTR ERVL -246 207 1 2016 259 54 20 chr6 110652846 110653529 -71761713 + L1ME1 LINE L1 5457 6162 -4 282 280 65 47 chr6 110653537 110653751 -71761491 + L1ME LINE L1 1628 1845 -4551 284 326 32 0 chr6 110654365 110654460 -71760782 - LTR16A LTR ERVL -15 435 338 300 299 47 0 chr6 110655244 110655371 -71759871 + L1ME LINE L1 5384 5516 -717 277 292 10 10 chr6 110655468 110655564 -71759678 + L1ME LINE L1 5660 5755 -484 588 302 68 74 chr6 110655564 110656008 -71759234 - L1MC1 LINE L1 -5226 844 404 4183 263 39 17 chr6 110656027 110657084 -71758158 + L1MEc LINE L1 2361 3461 -2754 1110 145 145 0 chr6 110657084 110657284 -71757958 - MER30 DNA MER1_type 0 230 2 4183 263 39 17 chr6 110657284 110657721 -71757521 + L1MEc LINE L1 3461 3887 -2328 9723 174 32 12 chr6 110657722 110659564 -71755678 - Tigger1 DNA MER2_type -539 1879 1 293 335 113 34 chr6 110659636 110659875 -71755367 - MIR SINE MIR 0 262 5 2137 109 0 3 chr6 110661573 110661867 -71753375 + AluSx SINE Alu 1 293 -19 787 0 58 0 chr6 110661869 110661972 -71753270 + (TATAA)n Simple_repeat Simple_repeat 1 109 0 1298 123 36 0 chr6 110662461 110662680 -71752562 + L1MA2 LINE L1 6078 6304 0 1156 299 36 19 chr6 110662951 110663429 -71751813 - L1ME1 LINE L1 -5 6161 5676 21 0 0 0 chr6 110663436 110663457 -71751785 + AT_rich Low_complexity Low_complexity 1 21 0 2423 157 12 2 chr6 110664287 110664714 -71750528 - L1MA6 LINE L1 0 6300 5870 28 29 0 0 chr6 110666283 110666318 -71748924 + AT_rich Low_complexity Low_complexity 1 35 0 3074 132 11 29 chr6 110666763 110667323 -71747919 - L1MA2 LINE L1 0 6304 5755 1344 263 14 83 chr6 110667419 110667913 -71747329 + L1MD1 LINE L1 82 541 -5999 308 278 12 52 chr6 110667938 110668111 -71747131 + L1MD1 LINE L1 4981 5146 -1394 334 266 16 71 chr6 110668130 110668314 -71746928 + L1MD1 LINE L1 5146 5319 -1221 567 253 51 46 chr6 110668324 110668696 -71746546 + L1MD1 LINE L1 5378 5751 -789 2283 235 39 6 chr6 110668703 110669214 -71746028 - MER74A LTR ERVL -16 542 15 3594 220 41 7 chr6 110669229 110669341 -71745901 + L1MD1 LINE L1 5753 5860 -776 432 0 0 0 chr6 110669341 110669389 -71745853 + (TA)n Simple_repeat Simple_repeat 2 49 0 3594 220 41 7 chr6 110669389 110670100 -71745142 + L1MD1 LINE L1 5860 6604 -32 22 70 0 0 chr6 110670109 110670152 -71745090 + AT_rich Low_complexity Low_complexity 1 43 0 29 47 0 0 chr6 110670180 110670223 -71745019 + AT_rich Low_complexity Low_complexity 1 43 0 240 86 0 0 chr6 110670453 110670488 -71744754 + (TG)n Simple_repeat Simple_repeat 2 36 0 199 71 48 0 chr6 110670487 110670529 -71744713 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 21 36 0 0 chr6 110670903 110670931 -71744311 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 110671390 110671418 -71743824 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 110673041 110673062 -71742180 + AT_rich Low_complexity Low_complexity 1 21 0 963 248 62 14 chr6 110673370 110673728 -71741514 + LTR43 LTR ERV1 176 459 -53 1481 152 103 33 chr6 110673796 110674098 -71741144 + LTR43-int LTR ERV1 1042 1364 -3434 519 290 31 50 chr6 110674532 110674791 -71740451 + LTR43-int LTR ERV1 1434 1687 -3111 274 314 0 0 chr6 110675386 110675456 -71739786 + LTR43-int LTR ERV1 1744 1813 -5278 957 324 34 37 chr6 110675755 110676769 -71738473 + LTR43-int LTR ERV1 1698 2804 -1994 5868 148 12 15 chr6 110676875 110678438 -71736804 - L1PB2 LINE L1 -7 6144 4591 2179 89 0 0 chr6 110678927 110679265 -71735977 + AluY SINE Alu 3 340 0 507 183 11 0 chr6 110679587 110679680 -71735562 + LTR43-int LTR ERV1 6350 6443 -233 236 129 65 0 chr6 110679682 110679756 -71735486 + (TTATA)n Simple_repeat Simple_repeat 1 78 0 477 234 51 32 chr6 110679832 110679990 -71735252 + LTR43-int LTR ERV1 4637 4797 -1 1077 215 58 7 chr6 110680235 110680509 -71734733 + LTR43 LTR ERV1 192 479 -123 236 294 54 43 chr6 110680482 110680574 -71734668 + MER41E LTR ERV1 361 453 -59 * 1914 187 13 3 chr6 110681547 110681937 -71733305 - L1MB3 LINE L1 -3 6416 6023 3129 237 33 30 chr6 110681937 110682967 -71732275 - L1MB3 LINE L1 -1909 4473 3441 3700 119 69 21 chr6 110682971 110684034 -71731208 - MER11A LTR ERVK 0 1236 1 1915 204 42 3 chr6 110684041 110685317 -71729925 - L1MB3 LINE L1 -2946 3436 2065 * 3717 211 12 10 chr6 110685314 110686112 -71729130 + L1M4c LINE L1 280 1079 -5305 1253 207 8 4 chr6 110686112 110686354 -71728888 - L1MB3 LINE L1 -6123 261 19 267 133 0 0 chr6 110686474 110686519 -71728723 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 67 0 0 chr6 110686899 110686944 -71728298 + AT_rich Low_complexity Low_complexity 1 45 0 27 62 0 0 chr6 110687794 110687842 -71727400 + AT_rich Low_complexity Low_complexity 1 48 0 339 258 75 63 chr6 110688125 110688377 -71726865 + L1M4 LINE L1 3806 4060 -2086 2031 170 6 20 chr6 110688619 110688972 -71726270 - MER7A DNA MER2_type 0 346 1 2423 68 13 0 chr6 110689606 110689913 -71725329 + AluSp SINE Alu 1 311 -2 225 243 40 14 chr6 110690172 110690246 -71724996 + MER104 DNA Tc2 29 104 -76 21 71 0 0 chr6 110690745 110690787 -71724455 + AT_rich Low_complexity Low_complexity 1 42 0 4514 226 27 7 chr6 110691179 110693228 -71722014 - L1MC1 LINE L1 -179 6154 4066 21 0 0 0 chr6 110693362 110693383 -71721859 + AT_rich Low_complexity Low_complexity 1 21 0 344 306 69 59 chr6 110693662 110693966 -71721276 - L1MC4a LINE L1 -1957 5851 5545 * 669 230 138 20 chr6 110693961 110694330 -71720912 - L1ME1 LINE L1 -327 5839 5403 1110 243 54 90 chr6 110694441 110694592 -71720650 - MLT1D LTR MaLR 0 505 350 378 0 0 0 chr6 110694592 110694634 -71720608 + (TG)n Simple_repeat Simple_repeat 1 42 0 1110 243 54 90 chr6 110694634 110695004 -71720238 - MLT1D LTR MaLR -155 350 3 23 0 0 0 chr6 110695635 110695658 -71719584 + AT_rich Low_complexity Low_complexity 1 23 0 317 289 30 66 chr6 110695710 110695876 -71719366 - HAL1b LINE L1 -429 919 760 568 307 28 0 chr6 110695954 110696172 -71719070 - HAL1b LINE L1 -806 542 319 24 67 0 0 chr6 110698461 110698506 -71716736 + AT_rich Low_complexity Low_complexity 1 45 0 315 0 0 0 chr6 110699467 110699502 -71715740 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 248 242 77 44 chr6 110699757 110699848 -71715394 + MLT1J2 LTR MaLR 357 450 0 1853 254 67 48 chr6 110699975 110700764 -71714478 - L1ME2 LINE L1 -18 6146 5343 34 0 0 0 chr6 110701439 110701473 -71713769 + AT_rich Low_complexity Low_complexity 1 34 0 396 304 82 57 chr6 110701483 110701921 -71713321 - L1ME4a LINE L1 -2 6119 5671 483 283 35 21 chr6 110701923 110702068 -71713174 - MIR SINE MIR -12 250 104 1965 155 108 5 chr6 110703372 110703760 -71711482 + MSTA LTR MaLR 1 428 0 24 77 0 0 chr6 110707101 110707153 -71708089 + AT_rich Low_complexity Low_complexity 1 52 0 962 174 92 0 chr6 110707513 110707697 -71707545 - Tigger7 DNA MER2_type 0 2491 2291 271 226 382 0 chr6 110707685 110707787 -71707455 - Tigger7 DNA MER2_type -2344 143 3 * 213 39 0 0 chr6 110709105 110709131 -71706111 + (TGG)n Simple_repeat Simple_repeat 3 28 0 630 388 36 33 chr6 110709322 110709928 -71705314 + L2 LINE L2 1898 2505 -809 2461 205 56 27 chr6 110710565 110711203 -71704039 - L1MA9 LINE L1 -1270 4876 4220 * 3485 198 49 39 chr6 110711201 110712526 -71702716 + L1MA9 LINE L1 4882 6332 -2 22 35 0 0 chr6 110712909 110712938 -71702304 + AT_rich Low_complexity Low_complexity 1 29 0 5073 179 39 7 chr6 110713154 110714880 -71700362 + L1MA5 LINE L1 4450 6234 -66 335 121 0 0 chr6 110714903 110714963 -71700279 + L1MA5 LINE L1 6175 6235 -65 38 39 0 0 chr6 110715040 110715092 -71700150 + AT_rich Low_complexity Low_complexity 1 52 0 6031 32 6 0 chr6 110715318 110716047 -71699195 - L1PA3 LINE L1 -1042 5104 4372 7738 18 1 1 chr6 110716047 110717131 -71698111 + L1PA3 LINE L1 5102 6155 0 2295 128 5 45 chr6 110717719 110718095 -71697147 + THE1B LTR MaLR 2 362 -2 9509 126 47 13 chr6 110718097 110719617 -71695625 + THE1B-int LTR MaLR 1 1572 -8 2108 149 5 37 chr6 110719619 110719995 -71695247 + THE1B LTR MaLR 1 364 0 3677 189 38 23 chr6 110719995 110720819 -71694423 - L1MB2 LINE L1 -18 6153 5318 1670 241 60 31 chr6 110720825 110721409 -71693833 - L1MB2 LINE L1 -904 5242 4642 27 49 0 0 chr6 110721460 110721501 -71693741 + AT_rich Low_complexity Low_complexity 1 41 0 6711 198 7 53 chr6 110721516 110723093 -71692149 - L1P LINE L1 -1177 4969 3465 235 111 67 0 chr6 110723128 110723173 -71692069 - L1 LINE L1 -1115 5031 4984 5490 121 10 29 chr6 110723173 110724370 -71690872 + L1PA15 LINE L1 4979 6162 -3 939 198 43 74 chr6 110724957 110725214 -71690028 - MLT1A1 LTR MaLR 0 365 117 606 204 0 0 chr6 110725220 110725333 -71689909 + L1PA15 LINE L1 5919 6031 -134 572 164 0 27 chr6 110725339 110725449 -71689793 - MLT1A1 LTR MaLR -256 109 3 34 90 0 8 chr6 110725475 110725577 -71689665 + AT_rich Low_complexity Low_complexity 1 103 -18 2143 123 0 0 chr6 110725577 110725879 -71689363 - AluSg SINE Alu -8 302 1 34 90 0 8 chr6 110725879 110725898 -71689344 + AT_rich Low_complexity Low_complexity 103 121 0 30 69 0 0 chr6 110725910 110725968 -71689274 + AT_rich Low_complexity Low_complexity 1 58 0 2054 124 0 3 chr6 110726509 110726808 -71688434 + AluSq SINE Alu 1 298 -15 283 363 9 9 chr6 110727313 110727426 -71687816 + MER110-int LTR ERV1 1969 2081 -2566 219 69 0 0 chr6 110727802 110727831 -71687411 + (T)n Simple_repeat Simple_repeat 1 29 0 1937 118 59 45 chr6 110727950 110728307 -71686935 + THE1B LTR MaLR 3 364 0 404 248 41 95 chr6 110728410 110728652 -71686590 + MER110-int LTR ERV1 2718 2946 -1701 2458 74 0 6 chr6 110730596 110730908 -71684334 + AluY SINE Alu 1 310 -1 33 0 0 0 chr6 110731409 110731442 -71683800 + AT_rich Low_complexity Low_complexity 1 33 0 460 222 74 23 chr6 110731562 110731738 -71683504 + L1ME4a LINE L1 5936 6120 -1 6125 27 1 4 chr6 110731742 110732478 -71682764 + L1PA4 LINE L1 5414 6147 -8 267 163 0 0 chr6 110732515 110732558 -71682684 - L1PA16 LINE L1 -10 6156 6114 23 0 0 0 chr6 110733818 110733841 -71681401 + AT_rich Low_complexity Low_complexity 1 23 0 236 291 117 82 chr6 110734721 110734927 -71680315 - L2 LINE L2 0 3313 3101 * 906 299 44 48 chr6 110734919 110735151 -71680091 - L2 LINE L2 -753 2561 2330 332 22 0 22 chr6 110735151 110735197 -71680045 + (CA)n Simple_repeat Simple_repeat 2 46 0 906 299 44 48 chr6 110735197 110735399 -71679843 - L2 LINE L2 -984 2330 2129 195 42 0 0 chr6 110735419 110735443 -71679799 + (TATG)n Simple_repeat Simple_repeat 4 27 0 351 0 0 0 chr6 110735455 110735494 -71679748 + (TG)n Simple_repeat Simple_repeat 2 40 0 29 84 0 0 chr6 110735832 110735903 -71679339 + AT_rich Low_complexity Low_complexity 1 71 0 228 67 0 0 chr6 110736614 110736644 -71678598 + (TA)n Simple_repeat Simple_repeat 2 31 0 1233 216 8 8 chr6 110736646 110736891 -71678351 - AluJo SINE Alu -26 286 42 255 290 14 0 chr6 110736891 110736960 -71678282 - AluJo SINE Alu -113 189 120 498 195 127 17 chr6 110736970 110737124 -71678118 - FLAM_C SINE Alu 0 169 3 224 272 49 12 chr6 110737595 110737676 -71677566 + L2 LINE L2 958 1041 -2273 272 191 43 11 chr6 110737803 110737897 -71677345 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 1972 306 144 70 chr6 110737899 110738902 -71676340 + L2 LINE L2 1055 1982 -1331 1669 138 49 75 chr6 110738902 110739287 -71675955 - THE1C LTR MaLR 0 375 1 1972 306 144 70 chr6 110739287 110740387 -71674855 + L2 LINE L2 1982 3313 0 294 368 15 15 chr6 110740404 110740540 -71674702 - MIR SINE MIR -124 138 3 21 57 0 0 chr6 110740572 110740607 -71674635 + AT_rich Low_complexity Low_complexity 1 35 0 186 320 13 27 chr6 110741130 110741205 -71674037 + L2 LINE L2 3232 3305 -8 36 82 0 0 chr6 110742643 110742728 -71672514 + AT_rich Low_complexity Low_complexity 1 85 0 2595 113 14 0 chr6 110743575 110743945 -71671297 - THE1C LTR MaLR 0 375 1 2537 292 64 40 chr6 110743998 110745570 -71669672 + L1MEc LINE L1 108 1717 -4679 21 0 0 0 chr6 110746388 110746409 -71668833 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 110746772 110746797 -71668445 + AT_rich Low_complexity Low_complexity 1 25 0 1495 87 78 0 chr6 110748029 110748248 -71666994 - L1PA8 LINE L1 -4 6168 5933 188 118 0 39 chr6 110748477 110748528 -71666714 + (TATAA)n Simple_repeat Simple_repeat 5 53 0 28 0 0 0 chr6 110749395 110749423 -71665819 + AT_rich Low_complexity Low_complexity 1 28 0 4637 147 37 2 chr6 110750576 110751435 -71663807 - L1PA11 LINE L1 -740 5428 4538 4325 150 9 7 chr6 110751436 110752170 -71663072 + L1PA11 LINE L1 5439 6174 0 3799 194 3 14 chr6 110752844 110753572 -71661670 + MER72 LTR ERV1 1 720 -2 489 285 106 0 chr6 110753845 110753996 -71661246 - MER5B DNA MER1_type -11 167 1 1028 226 25 4 chr6 110754027 110754270 -71660972 - L1MA7 LINE L1 0 6291 6044 1883 280 138 42 chr6 110754501 110755920 -71659322 + L1M4 LINE L1 3092 4765 -1381 2227 200 44 11 chr6 110755920 110756374 -71658868 + MER70A LTR ERVL 1 469 -3 1883 280 138 42 chr6 110756374 110756973 -71658269 + L1M4 LINE L1 4765 5305 -841 628 203 46 13 chr6 110756990 110757143 -71658099 + L1M4 LINE L1 2 159 -6383 670 115 106 0 chr6 110757437 110757550 -71657692 - L1M1 LINE L1 -518 5782 5658 747 200 30 30 chr6 110757580 110757792 -71657450 - L1PA8A LINE L1 -433 5698 5497 2435 225 31 3 chr6 110757800 110758503 -71656739 + L1PA8A LINE L1 4777 5489 -743 2529 71 0 0 chr6 110758575 110758884 -71656358 + AluY SINE Alu 3 311 0 21 71 0 0 chr6 110758937 110758979 -71656263 + AT_rich Low_complexity Low_complexity 1 42 0 7696 23 0 0 chr6 110758983 110759882 -71655360 - L1PA3 LINE L1 -3 6152 5254 524 289 34 79 chr6 110760204 110760470 -71654772 - MIR SINE MIR 0 262 9 1581 206 37 14 chr6 110760470 110760824 -71654418 + MLT2D LTR ERVL 5 366 -48 22 0 0 0 chr6 110760863 110760885 -71654357 + AT_rich Low_complexity Low_complexity 1 22 0 274 244 52 6 chr6 110760944 110761116 -71654126 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 30 0 0 chr6 110761930 110761963 -71653279 + AT_rich Low_complexity Low_complexity 1 33 0 228 229 33 74 chr6 110762083 110762205 -71653037 - MIR SINE MIR 0 262 146 836 106 0 0 chr6 110762947 110763060 -71652182 + THE1C LTR MaLR 1 113 -262 479 243 20 59 chr6 110763090 110763242 -71652000 + HERV16 LTR ERVL 1711 1856 -3140 1831 176 5 43 chr6 110763243 110763745 -71651497 + MER51A LTR ERV1 1 575 -59 1532 77 9 0 chr6 110763745 110763965 -71651277 + MER51A-int LTR ERV1 910 1131 -6989 * 3310 146 21 16 chr6 110763962 110764628 -71650614 + MER51A-int LTR ERV1 1375 2043 -6077 755 212 15 1 chr6 110764644 110764836 -71650406 + MER51A-int LTR ERV1 2022 4314 -566 802 181 39 19 chr6 110764839 110765044 -71650198 + MER51A-int LTR ERV1 3322 3530 -2416 337 284 0 3 chr6 110765040 110765206 -71650036 + MER51A-int LTR ERV1 5381 5595 -2161 * 292 157 0 0 chr6 110765697 110765748 -71649494 + MER51A-int LTR ERV1 7492 7542 -274 1675 267 47 55 chr6 110766202 110767267 -71647975 + MER51A-int LTR ERV1 6513 7816 0 2919 149 144 27 chr6 110767268 110767832 -71647410 + MER51A LTR ERV1 1 630 -4 263 287 56 46 chr6 110767841 110767949 -71647293 + HERV16 LTR ERVL 1912 2020 -3744 1228 125 0 23 chr6 110768066 110768282 -71646960 - AluY SINE Alu -100 211 1 582 281 101 10 chr6 110768303 110768591 -71646651 + L1MEc LINE L1 1755 2068 -4328 1018 210 33 21 chr6 110768642 110768885 -71646357 + MLT1D LTR MaLR 258 503 -2 599 198 35 20 chr6 110768894 110769091 -71646151 + L1MEc LINE L1 2100 2299 -4097 327 179 0 0 chr6 110769101 110769168 -71646074 + (TA)n Simple_repeat Simple_repeat 1 67 0 200 143 24 0 chr6 110769221 110769263 -71645979 + (TA)n Simple_repeat Simple_repeat 2 44 0 960 262 14 41 chr6 110769313 110769528 -71645714 + L1MEc LINE L1 2465 2667 -3548 2818 187 14 20 chr6 110769528 110770080 -71645162 - MER44D DNA MER2_type 0 605 2 960 262 14 41 chr6 110770080 110770231 -71645011 + L1MEc LINE L1 2667 2821 -3394 356 302 200 10 chr6 110770326 110770531 -71644711 - MLT1F1 LTR MaLR -3 564 321 841 254 48 3 chr6 110770554 110770845 -71644397 + L1M4 LINE L1 4645 4948 -1198 392 362 87 0 chr6 110773087 110773283 -71641959 + LTR16A LTR ERVL 225 437 -13 1349 322 33 0 chr6 110773302 110773817 -71641425 + HERV16 LTR ERVL 8 539 -4457 1908 166 54 117 chr6 110773968 110774593 -71640649 + L1MB8 LINE L1 5573 6158 -20 447 219 164 27 chr6 110774592 110774811 -71640431 - L1MD3 LINE L1 -41 7954 7706 * 257 254 0 16 chr6 110774851 110774914 -71640328 - MLT1F1 LTR MaLR -458 109 48 990 98 0 0 chr6 110774952 110775084 -71640158 + AluSp/q SINE Alu 171 302 -11 239 181 108 24 chr6 110775173 110775256 -71639986 + MER39 LTR ERV1 583 672 -35 431 253 126 47 chr6 110775308 110775809 -71639433 - L1MC4 LINE L1 -1290 6518 5980 2089 209 47 24 chr6 110776475 110776969 -71638273 - MLT1D LTR MaLR 0 505 1 26 30 0 0 chr6 110777776 110777809 -71637433 + AT_rich Low_complexity Low_complexity 1 33 0 25 65 0 0 chr6 110777821 110777867 -71637375 + AT_rich Low_complexity Low_complexity 1 46 0 234 213 16 0 chr6 110778157 110778218 -71637024 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 189 301 133 0 chr6 110780386 110780469 -71634773 - L2 LINE L2 -182 3090 2997 305 24 24 0 chr6 110780771 110780813 -71634429 + (CA)n Simple_repeat Simple_repeat 2 44 0 582 116 0 0 chr6 110782070 110782165 -71633077 - L1PA6 LINE L1 -1 6153 6059 293 333 118 55 chr6 110782789 110783170 -71632072 + L2 LINE L2 959 1363 -1951 528 236 118 38 chr6 110783192 110783494 -71631748 - L1MC4 LINE L1 -425 5759 5418 6616 194 150 28 chr6 110783496 110785060 -71630182 + MER52A LTR ERV1 1 1755 0 29 70 0 0 chr6 110785144 110785201 -71630041 + AT_rich Low_complexity Low_complexity 1 57 0 503 273 149 25 chr6 110785280 110785852 -71629390 - L1MC4 LINE L1 -1217 4929 4287 490 286 147 0 chr6 110785910 110786162 -71629080 - L1MC4 LINE L1 -1950 4196 3908 2396 260 64 21 chr6 110786191 110786952 -71628290 - MER21B LTR ERV1 -51 812 19 413 236 0 22 chr6 110786976 110787065 -71628177 - MER21B LTR ERV1 -776 87 1 1989 149 0 0 chr6 110787130 110787426 -71627816 - AluSx SINE Alu -16 296 1 415 224 71 18 chr6 110787561 110787731 -71627511 - L1MC4 LINE L1 -2429 3717 3539 34 65 0 0 chr6 110787731 110787793 -71627449 + AT_rich Low_complexity Low_complexity 1 62 0 358 266 113 11 chr6 110787827 110788004 -71627238 - L1MC4 LINE L1 -2865 3281 3087 232 121 0 0 chr6 110788238 110788271 -71626971 - Alu SINE Alu -23 279 247 919 124 0 0 chr6 110788271 110788400 -71626842 - AluJb SINE Alu -183 129 1 1391 208 3 45 chr6 110788405 110788713 -71626529 - AluJo SINE Alu -17 295 1 1516 196 0 38 chr6 110789004 110789321 -71625921 - AluJo SINE Alu -7 305 1 248 248 107 44 chr6 110789321 110789591 -71625651 - L1MC4 LINE L1 -3728 2418 2132 346 283 14 7 chr6 110790349 110790494 -71624748 + (TA)n Simple_repeat Simple_repeat 2 147 0 555 183 73 22 chr6 110790581 110790718 -71624524 + LTR50 LTR ERVL 3 146 -649 529 336 94 30 chr6 110790891 110791156 -71624086 + LTR50 LTR ERVL 387 668 -127 21 0 0 0 chr6 110791228 110791249 -71623993 + AT_rich Low_complexity Low_complexity 1 21 0 832 230 0 0 chr6 110791249 110791401 -71623841 - FRAM SINE Alu -23 153 2 3258 211 30 17 chr6 110792609 110793439 -71621803 + L1 LINE L1 4297 5137 -1009 23 0 0 0 chr6 110843470 110843493 -71571749 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 110844403 110844432 -71570810 + AT_rich Low_complexity Low_complexity 1 29 0 293 115 0 16 chr6 110844478 110844539 -71570703 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1688 117 0 0 chr6 110845150 110845380 -71569862 - AluSc SINE Alu 0 309 80 182 264 99 44 chr6 110845532 110845623 -71569619 + L2 LINE L2 1320 1415 -1899 228 342 119 40 chr6 110846027 110846229 -71569013 + L2 LINE L2 1821 2038 -1276 558 304 37 28 chr6 110846999 110847216 -71568026 - MIR SINE MIR -35 227 9 204 125 0 0 chr6 110847939 110847971 -71567271 + (TATG)n Simple_repeat Simple_repeat 3 34 0 477 353 66 0 chr6 110849922 110850166 -71565076 - MIR SINE MIR 0 262 3 30 27 0 0 chr6 110851284 110851321 -71563921 + AT_rich Low_complexity Low_complexity 1 37 0 31 44 0 0 chr6 110852679 110852724 -71562518 + AT_rich Low_complexity Low_complexity 1 45 0 272 136 0 45 chr6 110852748 110852814 -71562428 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 236 262 97 35 chr6 110853537 110853682 -71561560 + L1MC4 LINE L1 6891 7044 -998 1590 180 0 49 chr6 110854351 110854657 -71560585 - AluJo SINE Alu -16 296 6 258 200 0 17 chr6 110854710 110854770 -71560472 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1405 283 90 34 chr6 110855287 110855818 -71559424 - MLT2E LTR ERVL -14 614 54 23 33 0 0 chr6 110855835 110855865 -71559377 + AT_rich Low_complexity Low_complexity 1 30 0 209 210 16 0 chr6 110857082 110857144 -71558098 + (CA)n Simple_repeat Simple_repeat 2 64 0 22 35 0 0 chr6 110857251 110857280 -71557962 + AT_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr6 110857385 110857435 -71557807 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr6 110857466 110857501 -71557741 + AT_rich Low_complexity Low_complexity 1 35 0 340 234 57 8 chr6 110857966 110858090 -71557152 - L1MA8 LINE L1 -8 6283 6154 569 177 114 40 chr6 110858623 110858798 -71556444 + MER53 DNA DNA 2 189 0 1041 186 120 16 chr6 110859685 110859927 -71555315 - MER52A LTR ERV1 0 1755 1489 1987 228 206 25 chr6 110859952 110860953 -71554289 - MER52A LTR ERV1 -380 1375 1 2391 20 0 0 chr6 110861154 110861477 -71553765 - L1P LINE L1 -731 5424 5102 * 2462 21 0 0 chr6 110861475 110861762 -71553480 + L1P LINE L1 4370 4656 -1490 * 27234 54 36 2 chr6 110861758 110865325 -71549917 - L1P LINE L1 -2354 3792 105 9208 69 13 0 chr6 110865426 110867011 -71548231 - L1P2 LINE L1 -430 5724 4123 307 279 54 31 chr6 110867282 110867411 -71547831 - MLT1K LTR MaLR -267 321 190 21 0 0 0 chr6 110867576 110867597 -71547645 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 110868879 110868901 -71546341 + AT_rich Low_complexity Low_complexity 1 22 0 889 276 160 35 chr6 110870454 110871005 -71544237 - L1MCc LINE L1 -4981 1442 823 23 0 0 0 chr6 110871207 110871230 -71544012 + AT_rich Low_complexity Low_complexity 1 23 0 445 278 47 12 chr6 110872233 110872402 -71542840 + MER104 DNA Tc2 4 178 -2 24 53 0 0 chr6 110872859 110872897 -71542345 + AT_rich Low_complexity Low_complexity 1 38 0 2235 95 0 0 chr6 110872897 110873203 -71542039 + AluSg1 SINE Alu 1 306 0 1235 322 113 30 chr6 110873297 110873666 -71541576 - L2 LINE L2 -185 3128 2791 486 120 0 0 chr6 110873666 110873741 -71541501 + (TA)n Simple_repeat Simple_repeat 1 75 0 1235 322 113 30 chr6 110873741 110874087 -71541155 - L2 LINE L2 -522 2791 2330 2346 190 19 70 chr6 110874087 110874671 -71540571 + MLT2B3 LTR ERVL 1 554 0 1235 322 113 30 chr6 110874671 110874841 -71540401 - L2 LINE L2 -983 2330 2175 1657 136 3 86 chr6 110875306 110875644 -71539598 - AluSx SINE Alu 0 312 3 267 289 19 29 chr6 110876831 110876935 -71538307 + L2 LINE L2 3211 3313 0 39 50 0 0 chr6 110877650 110877710 -71537532 + AT_rich Low_complexity Low_complexity 1 60 0 22 35 0 0 chr6 110877746 110877775 -71537467 + AT_rich Low_complexity Low_complexity 1 29 0 23 56 5 0 chr6 110878178 110878264 -71536978 + AT_rich Low_complexity Low_complexity 1 51 0 26 0 0 0 chr6 110881383 110881409 -71533833 + AT_rich Low_complexity Low_complexity 1 26 0 280 358 83 4 chr6 110881613 110881842 -71533400 + L1MC/D LINE L1 5545 5791 -2017 30 27 0 0 chr6 110881957 110881994 -71533248 + AT_rich Low_complexity Low_complexity 1 37 0 363 299 111 45 chr6 110882216 110882460 -71532782 + HAL1 LINE L1 2248 2507 0 769 201 20 42 chr6 110884110 110884360 -71530882 - L1ME2 LINE L1 -223 5955 5709 273 75 0 0 chr6 110884377 110884417 -71530825 + (TG)n Simple_repeat Simple_repeat 2 41 0 411 320 60 34 chr6 110884634 110884868 -71530374 - L1MEc LINE L1 -6088 308 69 279 320 0 31 chr6 110885140 110885237 -71530005 + L2 LINE L2 2509 2602 -712 29 0 0 0 chr6 110885254 110885283 -71529959 + AT_rich Low_complexity Low_complexity 1 29 0 1876 118 7 28 chr6 110885283 110885598 -71529644 - AluSp SINE Alu 0 309 1 304 333 98 38 chr6 110885785 110886503 -71528739 - L1M4 LINE L1 -1797 4349 3589 710 279 0 0 chr6 110886716 110886877 -71528365 + MER63A DNA MER1_type 44 204 -6 422 245 9 19 chr6 110886877 110886983 -71528259 - LTR40b LTR ERVL -1 461 357 644 226 74 25 chr6 110887009 110887202 -71528040 + MSTC LTR MaLR 1 189 -207 1723 220 33 41 chr6 110887273 110887782 -71527460 - MLT1D LTR MaLR 0 505 1 1649 187 25 88 chr6 110887936 110888416 -71526826 + MER41B LTR ERV1 90 476 -10 33 43 0 0 chr6 110889124 110889171 -71526071 + AT_rich Low_complexity Low_complexity 1 47 0 775 212 0 0 chr6 110889177 110889314 -71525928 + FRAM SINE Alu 1 137 -39 228 67 0 0 chr6 110889325 110889355 -71525887 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2034 107 62 0 chr6 110889547 110889838 -71525404 + AluSx SINE Alu 1 309 -3 180 158 0 0 chr6 110890391 110890429 -71524813 + T-rich Low_complexity Low_complexity 1 38 0 42072 38 22 1 chr6 110890431 110896449 -71518793 - L1PA3 LINE L1 -3 6152 3 1208 124 56 20 chr6 110896449 110896708 -71518534 + MLT2A2 LTR ERVL 285 453 0 1283 145 32 14 chr6 110897054 110897275 -71517967 - AluSq SINE Alu -14 299 75 26 50 0 0 chr6 110897540 110897580 -71517662 + AT_rich Low_complexity Low_complexity 1 40 0 31 44 0 0 chr6 110898562 110898607 -71516635 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr6 110899105 110899127 -71516115 + AT_rich Low_complexity Low_complexity 1 22 0 381 236 99 39 chr6 110899746 110899979 -71515263 - LTR37B LTR ERV1 -10 458 212 207 0 0 0 chr6 110900909 110900932 -71514310 + (T)n Simple_repeat Simple_repeat 1 23 0 331 326 102 70 chr6 110901346 110901787 -71513455 - MLT1H LTR MaLR -12 537 83 957 140 11 62 chr6 110901993 110902171 -71513071 + AluSc SINE Alu 137 305 -4 622 320 133 55 chr6 110902417 110903237 -71512005 + L1MEc LINE L1 791 1747 -4649 191 36 36 0 chr6 110903237 110903265 -71511977 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 622 320 133 55 chr6 110903265 110903727 -71511515 + L1MEc LINE L1 1747 2172 -4224 21 71 0 0 chr6 110903839 110903881 -71511361 + AT_rich Low_complexity Low_complexity 1 42 0 758 279 24 20 chr6 110903885 110904182 -71511060 + L1MD2 LINE L1 5597 5894 -465 4290 175 25 16 chr6 110904197 110904866 -71510376 - L1PA16 LINE L1 -10 6156 5476 285 51 0 0 chr6 110904866 110904905 -71510337 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4290 175 25 16 chr6 110904905 110905069 -71510173 - L1PA16 LINE L1 -690 5476 5315 * 6123 133 21 0 chr6 110905063 110906210 -71509032 - L1PA14 LINE L1 -5 6156 4991 4285 192 18 7 chr6 110906208 110907064 -71508178 + L1PA14 LINE L1 4109 4973 -1173 * 2795 225 74 14 chr6 110907054 110908032 -71507210 - L1PA16 LINE L1 -813 5333 4231 * 5604 165 42 35 chr6 110908557 110910288 -71504954 + L1PA16 LINE L1 4410 6157 -9 1244 202 78 19 chr6 110910317 110910702 -71504540 + MSTC LTR MaLR 1 426 -2 336 24 0 0 chr6 110911750 110911791 -71503451 + (CA)n Simple_repeat Simple_repeat 1 41 0 252 0 0 0 chr6 110912456 110912484 -71502758 + (TG)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr6 110913022 110913051 -71502191 + AT_rich Low_complexity Low_complexity 1 29 0 374 296 117 65 chr6 110913348 110913842 -71501400 + L1M4 LINE L1 2633 3152 -2994 610 277 135 41 chr6 110914247 110914421 -71500821 - Charlie4a DNA MER1_type -1471 490 334 2182 65 45 0 chr6 110914421 110914712 -71500530 + AluY SINE Alu 1 304 -7 610 277 135 41 chr6 110914712 110914952 -71500290 - Charlie4a DNA MER1_type -1627 334 37 398 335 14 19 chr6 110916088 110916303 -71498939 + MIR SINE MIR 37 250 -12 416 277 18 54 chr6 110916338 110916504 -71498738 + MIR SINE MIR 41 200 -62 216 191 0 0 chr6 110916505 110916547 -71498695 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 78 0 0 chr6 110916714 110916765 -71498477 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr6 110917180 110917201 -71498041 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 110917255 110917280 -71497962 + AT_rich Low_complexity Low_complexity 1 25 0 343 330 70 51 chr6 110917339 110917554 -71497688 - LTR16A LTR ERVL -180 270 52 499 15 29 0 chr6 110918299 110918367 -71496875 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 21 36 0 0 chr6 110918494 110918522 -71496720 + AT_rich Low_complexity Low_complexity 1 28 0 289 238 122 55 chr6 110919142 110919306 -71495936 + MLT1J2 LTR MaLR 37 211 -239 2016 163 19 22 chr6 110920109 110920471 -71494771 + THE1B LTR MaLR 1 361 -3 11022 110 2 12 chr6 110920474 110922067 -71493175 + THE1B-int LTR MaLR 1 1578 -2 2067 149 19 32 chr6 110922069 110922438 -71492804 + THE1B LTR MaLR 1 364 0 24 53 0 0 chr6 110923067 110923105 -71492137 + AT_rich Low_complexity Low_complexity 1 38 0 359 197 13 13 chr6 110923191 110923267 -71491975 - MIR SINE MIR -30 232 157 1345 182 81 85 chr6 110923335 110923769 -71491473 + MSTB1 LTR MaLR 1 432 0 645 213 6 27 chr6 110923792 110923975 -71491267 - Charlie1 DNA MER1_type -5 2756 2578 244 242 129 73 chr6 110923982 110924064 -71491178 + L2 LINE L2 3128 3221 -92 1981 138 38 54 chr6 110924064 110924131 -71491111 - THE1B LTR MaLR 0 364 297 2112 142 0 0 chr6 110924131 110924441 -71490801 - AluSx SINE Alu -1 311 2 1981 138 38 54 chr6 110924441 110924743 -71490499 - THE1B LTR MaLR -67 297 1 244 242 129 73 chr6 110924743 110924784 -71490458 + L2 LINE L2 3221 3258 -55 27 62 0 0 chr6 110924789 110924837 -71490405 + AT_rich Low_complexity Low_complexity 1 48 0 24 32 0 0 chr6 110924906 110924937 -71490305 + AT_rich Low_complexity Low_complexity 1 31 0 2866 241 59 7 chr6 110924937 110925526 -71489716 - Charlie1 DNA MER1_type -185 2576 1924 2228 78 10 7 chr6 110925526 110925821 -71489421 - AluY SINE Alu -15 296 1 2866 241 59 7 chr6 110925821 110926117 -71489125 - Charlie1 DNA MER1_type -837 1924 1645 21 0 0 0 chr6 110927126 110927147 -71488095 + AT_rich Low_complexity Low_complexity 1 21 0 310 322 35 79 chr6 110927707 110927815 -71487427 + L1ME LINE L1 4625 4736 -1410 2001 104 4 0 chr6 110927815 110928084 -71487158 + AluSp SINE Alu 14 283 -30 216 97 0 0 chr6 110928084 110928115 -71487127 + (TAGA)n Simple_repeat Simple_repeat 1 31 0 310 322 35 79 chr6 110928115 110928399 -71486843 + L1ME LINE L1 4734 5001 -1145 608 271 52 27 chr6 110928426 110928872 -71486370 + L1ME LINE L1 5060 5518 -646 2208 109 3 3 chr6 110929055 110929368 -71485874 + AluSq SINE Alu 1 313 0 283 258 0 22 chr6 110930702 110930791 -71484451 - L1MC4 LINE L1 -1339 6703 6617 23 0 0 0 chr6 110931098 110931121 -71484121 + AT_rich Low_complexity Low_complexity 1 23 0 416 309 26 7 chr6 110931121 110931273 -71483969 + MER69 DNA AcHobo 17 171 -1055 488 284 86 19 chr6 110931726 110931983 -71483259 - L1MEc LINE L1 -5051 1345 1072 301 338 62 41 chr6 110932195 110932485 -71482757 + L1ME LINE L1 5378 5673 -448 3528 228 1 0 chr6 110932725 110933520 -71481722 - L1PB1 LINE L1 -876 5270 4475 3307 97 18 6 chr6 110933517 110933528 -71481714 + L1PB1 LINE L1 5279 5288 -863 * 180 0 0 0 chr6 110933528 110933548 -71481694 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3307 97 18 6 chr6 110933548 110934044 -71481198 + L1PB1 LINE L1 5288 5792 -359 206 103 0 26 chr6 110934044 110934083 -71481159 + (TA)n Simple_repeat Simple_repeat 2 39 0 2394 132 0 3 chr6 110934204 110934568 -71480674 + L1PB1 LINE L1 5783 6145 -6 1351 197 148 88 chr6 110936311 110937047 -71478195 + LTR1 LTR ERV1 6 785 0 1513 199 71 6 chr6 110937284 110937606 -71477636 + MER2 DNA MER2_type 1 343 -1 1642 265 65 30 chr6 110938814 110939227 -71476015 - MLT1E2 LTR MaLR -4 622 180 2037 74 42 18 chr6 110939227 110939511 -71475731 - AluSc SINE Alu -18 291 1 1642 265 65 30 chr6 110939511 110939698 -71475544 - MLT1E2 LTR MaLR -446 180 1 688 217 54 30 chr6 110939812 110939978 -71475264 - AluJo SINE Alu -140 172 3 1332 198 20 0 chr6 110940790 110941043 -71474199 + MER2 DNA MER2_type 1 258 -87 38053 87 5 9 chr6 110941055 110947213 -71468029 - L1PA6 LINE L1 -11 6143 11 26 50 0 0 chr6 110947337 110947377 -71467865 + AT_rich Low_complexity Low_complexity 1 40 0 264 210 59 0 chr6 110947473 110947592 -71467650 + (TA)n Simple_repeat Simple_repeat 2 127 0 25 65 0 0 chr6 110947718 110947764 -71467478 + AT_rich Low_complexity Low_complexity 1 46 0 278 288 168 5 chr6 110948273 110948464 -71466778 + L1M4 LINE L1 4076 4297 -1849 2690 20 0 0 chr6 110948824 110949123 -71466119 + AluY SINE Alu 1 299 -12 243 61 0 0 chr6 110949265 110949298 -71465944 + (TG)n Simple_repeat Simple_repeat 2 34 0 273 264 11 23 chr6 110949302 110949389 -71465853 - MLT1H LTR MaLR -306 243 158 427 186 168 0 chr6 110949456 110949569 -71465673 + L1MA7 LINE L1 6109 6240 -51 296 370 15 7 chr6 110949579 110949714 -71465528 + MIR SINE MIR 20 155 -107 1983 250 69 25 chr6 110950218 110950766 -71464476 - L1MC4 LINE L1 -174 7868 7281 987 137 0 0 chr6 110950766 110950927 -71464315 + (TA)n Simple_repeat Simple_repeat 2 162 0 1983 250 69 25 chr6 110950927 110951087 -71464155 - L1MC4 LINE L1 -761 7281 7129 813 98 35 7 chr6 110951423 110951566 -71463676 + L1MA4 LINE L1 6148 6294 -6 2018 133 3 0 chr6 110951601 110951894 -71463348 + AluSx SINE Alu 3 296 -16 509 246 68 21 chr6 110952057 110952248 -71462994 - L1MC4a LINE L1 -763 7045 6846 969 270 25 58 chr6 110952268 110952804 -71462438 - MER39 LTR ERV1 -20 687 9 3342 196 57 10 chr6 110952881 110953365 -71461877 + MER44D DNA MER2_type 12 411 -2076 2006 133 44 39 chr6 110953365 110953727 -71461515 - THE1B LTR MaLR 0 364 1 3342 196 57 10 chr6 110953727 110953930 -71461312 + MER44D DNA MER2_type 411 603 -2 492 18 0 0 chr6 110953931 110953988 -71461254 + (TA)n Simple_repeat Simple_repeat 2 58 0 537 265 88 29 chr6 110954003 110954419 -71460823 - L1MC4 LINE L1 -1243 6565 6240 282 249 61 85 chr6 110954406 110954571 -71460671 - L1MC4a LINE L1 -1591 6217 6057 * 647 242 83 11 chr6 110954573 110954847 -71460395 - L1ME LINE L1 -599 5563 5255 305 364 32 29 chr6 110955125 110955433 -71459809 - L1ME LINE L1 -1195 4951 4643 23 33 0 0 chr6 110955488 110955518 -71459724 + AT_rich Low_complexity Low_complexity 1 30 0 352 118 0 0 chr6 110955648 110955699 -71459543 + Tigger7 DNA MER2_type 358 408 -325 706 296 74 21 chr6 110955726 110956304 -71458938 - L1ME LINE L1 -1811 4335 3730 195 42 0 0 chr6 110956419 110956443 -71458799 + (T)n Simple_repeat Simple_repeat 1 24 0 200 35 35 0 chr6 110957185 110957214 -71458028 + (GA)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr6 110957589 110957617 -71457625 + AT_rich Low_complexity Low_complexity 1 28 0 389 31 0 62 chr6 110958291 110958355 -71456887 - L1PA2 LINE L1 0 6155 6096 2063 62 0 0 chr6 110958355 110958629 -71456613 + L1P LINE L1 1095 1368 -4778 207 296 56 0 chr6 110958666 110958737 -71456505 - MIR SINE MIR -71 191 117 840 249 67 18 chr6 110958908 110960017 -71455225 + L1ME1 LINE L1 4771 6116 -50 940 189 0 16 chr6 110961285 110961470 -71453772 + AluJb SINE Alu 129 310 -2 32 57 0 0 chr6 110961553 110961606 -71453636 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr6 110961633 110961661 -71453581 + AT_rich Low_complexity Low_complexity 1 28 0 1054 89 30 59 chr6 110961675 110961844 -71453398 + THE1C LTR MaLR 1 164 -211 243 0 0 0 chr6 110961844 110961871 -71453371 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6884 40 1 2 chr6 110961871 110962704 -71452538 - L1PA5 LINE L1 -11 6143 5312 3140 53 0 0 chr6 110962703 110963098 -71452144 + L1PA5 LINE L1 4894 5288 -858 * 1022 169 26 43 chr6 110963098 110963329 -71451913 + THE1C LTR MaLR 149 375 0 1026 248 31 21 chr6 110963379 110963727 -71451515 - MER110 LTR ERV1 -179 312 1 1077 105 6 6 chr6 110964488 110964650 -71450592 + L1MA1 LINE L1 6133 6294 -8 36 62 0 0 chr6 110964652 110964716 -71450526 + AT_rich Low_complexity Low_complexity 1 64 0 1356 168 13 0 chr6 110965245 110965477 -71449765 - MER46A DNA MER2_type -1 235 1 182 372 69 21 chr6 110965667 110965812 -71449430 - L2 LINE L2 -586 2728 2577 509 63 13 25 chr6 110965985 110966064 -71449178 + MADE1 DNA Mariner 3 80 0 233 262 252 9 chr6 110966545 110966652 -71448590 + MIR SINE MIR 10 142 -120 334 286 37 104 chr6 110966708 110966944 -71448298 + MLT1H1 LTR MaLR 34 234 -321 3361 156 14 8 chr6 110966956 110967940 -71447302 - L1PA15 LINE L1 -345 5820 4836 1991 155 3 9 chr6 110967940 110968289 -71446953 + L1PA15 LINE L1 5819 6165 0 551 245 129 31 chr6 110968523 110968686 -71446556 + MSTB2 LTR MaLR 200 408 -49 196 179 0 36 chr6 110969565 110969621 -71445621 + CT-rich Low_complexity Low_complexity 3 56 0 6852 155 23 6 chr6 110970086 110971249 -71443993 + Tigger1 DNA MER2_type 1 1183 -1235 1448 169 24 10 chr6 110971258 110971554 -71443688 + L1PB2 LINE L1 4727 5026 -1120 3308 134 13 11 chr6 110971554 110972090 -71443152 + L1PB2 LINE L1 5589 6132 -19 315 77 19 0 chr6 110972151 110972203 -71443039 + L1PB2 LINE L1 6098 6150 -1 6847 143 48 27 chr6 110972219 110973449 -71441793 + Tigger1 DNA MER2_type 1163 2418 0 420 114 14 29 chr6 110974175 110974245 -71440997 + THE1C LTR MaLR 3 71 -304 21 0 0 0 chr6 110975167 110975188 -71440054 + AT_rich Low_complexity Low_complexity 1 21 0 2262 98 0 6 chr6 110975731 110976046 -71439196 - AluSq SINE Alu 0 313 1 21 0 0 0 chr6 110976136 110976157 -71439085 + AT_rich Low_complexity Low_complexity 1 21 0 679 340 5 0 chr6 110976554 110976766 -71438476 + MIR SINE MIR 48 260 -2 2377 28 0 10 chr6 110976940 110977229 -71438013 - L1PA4 LINE L1 0 6155 5870 1503 54 0 0 chr6 110978818 110979004 -71436238 - L1PA5 LINE L1 -1123 5023 4838 7239 47 1 0 chr6 110979004 110980113 -71435129 + L1PA5 LINE L1 5041 6150 -4 203 189 0 0 chr6 110980465 110980502 -71434740 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 682 305 6 0 chr6 110980847 110981011 -71434231 - MLT1E LTR MaLR -428 165 1 1147 240 47 23 chr6 110981087 110981429 -71433813 + MLT2C1 LTR ERVL 1 350 -47 207 139 0 0 chr6 110981434 110981470 -71433772 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 273 273 0 15 chr6 110981609 110981675 -71433567 - MLT1E-int LTR MaLR -171 1200 1136 189 0 0 0 chr6 110981847 110981868 -71433374 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1889 146 7 0 chr6 110982904 110983191 -71432051 + AluSx SINE Alu 1 289 -23 220 27 54 0 chr6 110983195 110983232 -71432010 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 1383 254 31 65 chr6 110983925 110984433 -71430809 - MLT1D LTR MaLR -14 491 1 309 270 157 15 chr6 110984531 110984735 -71430507 - L1MC4a LINE L1 -1940 5868 5636 203 250 0 0 chr6 110985227 110985271 -71429971 + (TG)n Simple_repeat Simple_repeat 1 44 0 222 218 0 0 chr6 110985329 110985384 -71429858 + T-rich Low_complexity Low_complexity 1 55 0 2100 43 4 0 chr6 110987184 110987438 -71427804 + AluY SINE Alu 41 295 -16 576 298 44 18 chr6 110987613 110987841 -71427401 + MIR SINE MIR 29 262 0 27 0 0 0 chr6 110988849 110988876 -71426366 + AT_rich Low_complexity Low_complexity 1 27 0 219 186 0 0 chr6 110989519 110989562 -71425680 + (CA)n Simple_repeat Simple_repeat 2 44 0 499 278 172 22 chr6 110990508 110990735 -71424507 + MIR SINE MIR 1 261 -1 26 64 0 0 chr6 110991319 110991366 -71423876 + AT_rich Low_complexity Low_complexity 1 47 0 714 215 6 0 chr6 110991915 110992078 -71423164 - L1ME3 LINE L1 -1 6161 5998 337 301 52 16 chr6 110992076 110992099 -71423143 - L1MA3 LINE L1 -393 5912 5890 * 807 283 87 0 chr6 110992099 110992477 -71422765 - L1ME3 LINE L1 -281 5885 5474 29 60 0 0 chr6 110992487 110992537 -71422705 + AT_rich Low_complexity Low_complexity 1 50 0 22 48 0 48 chr6 110992577 110992639 -71422603 + AT_rich Low_complexity Low_complexity 1 59 0 28 0 0 0 chr6 110992902 110992930 -71422312 + AT_rich Low_complexity Low_complexity 1 28 0 1732 56 0 0 chr6 110994062 110994278 -71420964 + L1PA3 LINE L1 5937 6152 -3 23 0 0 0 chr6 110994278 110994301 -71420941 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 110994339 110994364 -71420878 + AT_rich Low_complexity Low_complexity 1 25 0 573 168 145 92 chr6 110994934 110995294 -71419948 - MLT2B1 LTR ERVL -7 508 1 204 179 0 0 chr6 110995321 110995360 -71419882 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 34 0 0 0 chr6 110995883 110995917 -71419325 + AT_rich Low_complexity Low_complexity 1 34 0 2178 135 0 0 chr6 110996038 110996342 -71418900 - AluSx SINE Alu -8 304 1 261 362 0 11 chr6 110996508 110996602 -71418640 + MIR SINE MIR 1 93 -169 21 0 0 0 chr6 110997089 110997110 -71418132 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 110997901 110997925 -71417317 + AT_rich Low_complexity Low_complexity 1 24 0 3474 171 34 0 chr6 110998138 110998791 -71416451 + L1MC1 LINE L1 5658 6332 -1 521 361 129 15 chr6 110998931 110999272 -71415970 + L1M3a LINE L1 11 390 -5565 5399 188 14 16 chr6 110999276 110999599 -71415643 + L1PA16 LINE L1 4073 4395 -1771 213 39 0 0 chr6 110999599 110999625 -71415617 + (CA)n Simple_repeat Simple_repeat 1 26 0 5399 188 14 16 chr6 110999625 111001398 -71413844 + L1PA16 LINE L1 4395 6165 -1 36 0 0 0 chr6 111001485 111001521 -71413721 + AT_rich Low_complexity Low_complexity 1 36 0 5143 203 120 10 chr6 111001526 111003956 -71411286 + L1PB3 LINE L1 3289 6153 -1 374 327 26 9 chr6 111004491 111004716 -71410526 + L1M3a LINE L1 311 703 -5252 250 386 5 11 chr6 111004685 111004803 -71410439 + L1M3a LINE L1 600 718 -5237 * 2273 94 3 10 chr6 111004803 111005111 -71410131 - AluSc SINE Alu -3 306 1 250 386 5 11 chr6 111005111 111005176 -71410066 + L1M3a LINE L1 718 782 -5173 * 1060 312 77 49 chr6 111005163 111005800 -71409442 + L1M3a LINE L1 309 963 -4992 1754 136 131 11 chr6 111005801 111006153 -71409089 + MER57A LTR ERV1 10 403 0 1076 167 35 0 chr6 111006157 111006384 -71408858 + L1MA7 LINE L1 6057 6291 0 22 35 0 0 chr6 111006594 111006623 -71408619 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr6 111006868 111006901 -71408341 + AT_rich Low_complexity Low_complexity 1 33 0 241 67 22 22 chr6 111007159 111007204 -71408038 + (TA)n Simple_repeat Simple_repeat 2 46 0 717 108 0 0 chr6 111007423 111007525 -71407717 + MLT2A2 LTR ERVL 1 102 -351 281 78 137 0 chr6 111007529 111007580 -71407662 + MLT2A1 LTR ERVL 346 403 -41 306 319 0 11 chr6 111007714 111007805 -71407437 + L1MC4 LINE L1 6614 6703 -1339 29409 92 10 3 chr6 111007958 111012968 -71402274 - HERVL LTR ERVL -416 5238 144 375 340 158 5 chr6 111013083 111013298 -71401944 + MIR SINE MIR 13 260 -2 23 33 0 0 chr6 111013393 111013423 -71401819 + AT_rich Low_complexity Low_complexity 1 30 0 28868 44 35 2 chr6 111013638 111017306 -71397936 + L1P LINE L1 3 3792 -2354 2440 21 0 0 chr6 111017302 111017587 -71397655 - L1P LINE L1 -1490 4656 4372 * 7331 19 26 1 chr6 111017587 111018618 -71396624 + L1PA2 LINE L1 5102 6154 -1 33 0 0 0 chr6 111018882 111018915 -71396327 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr6 111018962 111018985 -71396257 + AT_rich Low_complexity Low_complexity 1 23 0 2700 67 22 0 chr6 111019000 111019359 -71395883 - L1PA6 LINE L1 -5 6149 5783 2706 31 0 0 chr6 111019459 111019778 -71395464 - L1PA4 LINE L1 -55 6100 5782 1590 58 0 0 chr6 111019778 111019984 -71395258 + HERVL-A1 LTR ERVL 5449 5654 0 3182 99 2 5 chr6 111019984 111020429 -71394813 + MLT2A1 LTR ERVL 1 444 0 471 289 66 69 chr6 111020619 111020982 -71394260 + L1MEd LINE L1 758 1119 -5000 754 251 89 46 chr6 111021002 111021305 -71393937 - MLT1C LTR MaLR -92 375 60 409 288 56 10 chr6 111021326 111021524 -71393718 + L1ME3A LINE L1 5731 5937 -233 209 176 0 0 chr6 111021730 111021764 -71393478 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr6 111022054 111022077 -71393165 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr6 111022244 111022276 -71392966 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr6 111022485 111022513 -71392729 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 111024684 111024705 -71390537 + AT_rich Low_complexity Low_complexity 1 21 0 234 222 16 16 chr6 111024806 111024869 -71390373 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 1462 209 42 29 chr6 111027745 111028128 -71387114 + MLT1B LTR MaLR 1 388 -2 224 361 21 10 chr6 111028255 111028352 -71386890 + L3 LINE CR1 1453 1550 -27 1504 127 75 16 chr6 111028362 111028615 -71386627 - AluSc SINE Alu -10 299 32 3989 118 63 52 chr6 111030283 111031049 -71384193 - LTR1 LTR ERV1 0 785 12 316 247 0 0 chr6 111031736 111031809 -71383433 - MLT1I LTR MaLR 0 409 337 890 281 98 24 chr6 111034008 111034417 -71380825 - MER110 LTR ERV1 -41 450 12 336 143 0 0 chr6 111034520 111034576 -71380666 + (TA)n Simple_repeat Simple_repeat 2 57 0 372 253 11 0 chr6 111034576 111034667 -71380575 - L1MC4 LINE L1 -1339 6703 6612 624 296 60 22 chr6 111034683 111034950 -71380292 - MER110-int LTR ERV1 -19 4628 4352 496 292 41 33 chr6 111034975 111035218 -71380024 - MER110-int LTR ERV1 -1239 3408 3164 1769 170 0 3 chr6 111035218 111035522 -71379720 + AluJb SINE Alu 1 303 0 1987 142 16 67 chr6 111035731 111036119 -71379123 - MLT1B LTR MaLR 0 390 23 242 247 62 41 chr6 111036120 111036217 -71379025 - MLT1-int LTR MaLR -366 1005 907 450 363 45 3 chr6 111036474 111036766 -71378476 - L1MEc LINE L1 -5981 415 112 542 340 98 48 chr6 111037825 111038266 -71376976 + LTR33 LTR ERVL 56 518 -3 2209 113 3 25 chr6 111038296 111038616 -71376626 - AluSq SINE Alu 0 313 1 557 326 68 40 chr6 111038818 111039171 -71376071 + L2 LINE L2 2928 3290 -23 24 0 0 0 chr6 111040305 111040329 -71374913 + AT_rich Low_complexity Low_complexity 1 24 0 39 0 0 0 chr6 111040633 111040672 -71374570 + AT_rich Low_complexity Low_complexity 1 39 0 1869 154 38 35 chr6 111041391 111041760 -71373482 - THE1C LTR MaLR -5 370 1 5041 121 11 7 chr6 111041760 111042507 -71372735 - THE1C-int LTR MaLR 0 1580 831 226 269 0 0 chr6 111042508 111042560 -71372682 + LTR30 LTR ERV1 1 52 -670 626 132 92 175 chr6 111042563 111042814 -71372428 + LTR12 LTR ERV1 56 285 -429 300 235 0 0 chr6 111042815 111042883 -71372359 + LTR30 LTR ERV1 553 620 -102 765 165 25 0 chr6 111042883 111043004 -71372238 + LTR12 LTR ERV1 355 478 -236 4974 151 49 1 chr6 111043005 111043802 -71371440 - THE1C-int LTR MaLR -745 835 1 1986 140 21 49 chr6 111043802 111043912 -71371330 - THE1C LTR MaLR 0 375 263 2280 129 56 0 chr6 111043912 111044269 -71370973 + MER51B LTR ERV1 1 377 0 1986 140 21 49 chr6 111044269 111044544 -71370698 - THE1C LTR MaLR -112 263 1 518 289 103 75 chr6 111045125 111045838 -71369404 - LTR50 LTR ERVL -128 667 2 1349 280 71 34 chr6 111046120 111046655 -71368587 + MLT1H1 LTR MaLR 1 555 0 25 65 0 0 chr6 111046751 111046797 -71368445 + AT_rich Low_complexity Low_complexity 1 46 0 230 218 58 0 chr6 111046824 111046911 -71368331 + A-rich Low_complexity Low_complexity 1 92 0 25 31 0 0 chr6 111047006 111047038 -71368204 + AT_rich Low_complexity Low_complexity 1 32 0 2014 99 6 69 chr6 111047430 111047763 -71367479 - AluSq SINE Alu -1 312 1 1770 39 26 35 chr6 111047996 111048226 -71367016 + AluY SINE Alu 84 311 0 2107 96 7 3 chr6 111048238 111048531 -71366711 + AluSc SINE Alu 1 294 -15 240 35 0 0 chr6 111048537 111048566 -71366676 + (TA)n Simple_repeat Simple_repeat 1 29 0 1684 264 102 19 chr6 111048655 111049193 -71366049 + MLT1E LTR MaLR 8 590 -3 1075 329 81 14 chr6 111049244 111049801 -71365441 + L2 LINE L2 1990 2583 -731 184 280 120 0 chr6 111049992 111050092 -71365150 + L2 LINE L2 3104 3215 -98 3324 169 48 48 chr6 111050232 111051017 -71364225 - LTR1 LTR ERV1 0 785 1 27 62 0 0 chr6 111051022 111051070 -71364172 + AT_rich Low_complexity Low_complexity 1 48 0 2270 160 77 2 chr6 111051778 111052259 -71362983 - L1MA8 LINE L1 -5 6286 5770 1075 207 9 5 chr6 111052614 111052827 -71362415 - MER67C LTR ERV1 -311 399 186 5609 117 314 34 chr6 111052830 111054156 -71361086 - pTR5 LTR ERV1 0 2438 741 1699 181 38 24 chr6 111054190 111054560 -71360682 + THE1C LTR MaLR 1 375 0 506 145 222 0 chr6 111054563 111054680 -71360562 - MER67D LTR ERV1 -370 144 2 336 211 74 11 chr6 111054680 111054773 -71360469 + MLT1E3 LTR MaLR 405 503 -121 2441 22 0 0 chr6 111056449 111056727 -71358515 - L1P1 LINE L1 -415 5740 5463 704 195 0 16 chr6 111056727 111056855 -71358387 + Tigger7 DNA MER2_type 2358 2483 -4 270 0 0 0 chr6 111058068 111058098 -71357144 + (CA)n Simple_repeat Simple_repeat 2 31 0 6899 57 7 17 chr6 111058209 111059524 -71355718 - L1PA7 LINE L1 -13 6141 4829 31 68 0 0 chr6 111059525 111059584 -71355658 + AT_rich Low_complexity Low_complexity 1 59 0 202 309 52 52 chr6 111060128 111060264 -71354978 - MIR SINE MIR -120 142 7 763 193 8 23 chr6 111060799 111061060 -71354182 + CT-rich Low_complexity Low_complexity 1 257 0 233 160 0 60 chr6 111061060 111061110 -71354132 + T-rich Low_complexity Low_complexity 2 48 0 31 44 0 0 chr6 111062531 111062576 -71352666 + AT_rich Low_complexity Low_complexity 1 45 0 397 179 11 11 chr6 111062606 111062701 -71352541 + GA-rich Low_complexity Low_complexity 3 97 0 1412 313 28 13 chr6 111062701 111063309 -71351933 - L2 LINE L2 -909 2405 1789 2876 160 46 49 chr6 111063419 111064033 -71351209 + LTR9 LTR ERV1 1 612 0 5861 66 33 3 chr6 111064291 111065048 -71350194 - LTR17 LTR ERV1 0 780 1 282 319 84 0 chr6 111065117 111065236 -71350006 - L2 LINE L2 -1523 1791 1663 * 473 249 124 17 chr6 111065235 111065412 -71349830 + L2 LINE L2 3111 3306 -7 273 323 58 72 chr6 111065462 111065685 -71349557 + MIR3 SINE MIR 3 222 -40 254 336 50 14 chr6 111067095 111067235 -71348007 + MIR SINE MIR 79 223 -39 248 162 0 0 chr6 111067990 111068027 -71347215 + MSTA LTR MaLR 1 37 -391 2500 115 54 7 chr6 111068123 111068532 -71346710 + MSTA LTR MaLR 1 428 0 782 240 64 0 chr6 111069084 111069288 -71345954 + MLT1E1 LTR MaLR 65 281 -373 825 293 138 13 chr6 111069338 111069642 -71345600 + L2 LINE L2 2528 2869 -445 376 236 8 147 chr6 111069654 111069912 -71345330 + L2 LINE L2 3092 3313 0 21 36 0 0 chr6 111070588 111070616 -71344626 + AT_rich Low_complexity Low_complexity 1 28 0 985 298 51 88 chr6 111070634 111071559 -71343683 + L1M3c LINE L1 11 901 -5240 1702 201 8 45 chr6 111071725 111072104 -71343138 - MLT1A1 LTR MaLR 0 365 1 582 226 75 29 chr6 111075124 111075319 -71339923 + L1MCb LINE L1 212 602 -5655 422 211 42 0 chr6 111075356 111075451 -71339791 + L1MCb LINE L1 500 598 -5447 3715 259 82 39 chr6 111075472 111078097 -71337145 + L1MCb LINE L1 2516 5380 -1184 1191 82 12 6 chr6 111079408 111079578 -71335664 + L1PA14 LINE L1 5987 6157 -4 9657 208 68 21 chr6 111079959 111084801 -71330441 - L1MCa LINE L1 -744 5682 735 2388 84 0 0 chr6 111084801 111085109 -71330133 - AluY SINE Alu -3 308 1 9657 208 68 21 chr6 111085109 111085875 -71329367 - L1MCa LINE L1 -5691 735 7 21 0 0 0 chr6 111085882 111085903 -71329339 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr6 111086189 111086240 -71329002 + AT_rich Low_complexity Low_complexity 1 51 0 1655 186 0 10 chr6 111086254 111086555 -71328687 + AluJb SINE Alu 12 309 -3 25 0 0 0 chr6 111087149 111087174 -71328068 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 111087304 111087326 -71327916 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr6 111087370 111087404 -71327838 + AT_rich Low_complexity Low_complexity 1 34 0 21 71 0 0 chr6 111087461 111087503 -71327739 + AT_rich Low_complexity Low_complexity 1 42 0 274 217 0 14 chr6 111088270 111088339 -71326903 + (TA)n Simple_repeat Simple_repeat 1 68 0 533 304 136 49 chr6 111089502 111090037 -71325205 + L2 LINE L2 2559 3169 -144 234 0 0 0 chr6 111090037 111090063 -71325179 + (CA)n Simple_repeat Simple_repeat 2 27 0 533 304 136 49 chr6 111090063 111090107 -71325135 + L2 LINE L2 3169 3208 -105 488 168 50 34 chr6 111091150 111091210 -71324032 - L1MC3 LINE L1 -20 7765 7707 1571 201 66 24 chr6 111091210 111091543 -71323699 - MER7A DNA MER2_type -1 345 1 488 168 50 34 chr6 111091543 111091601 -71323641 - L1MC3 LINE L1 -78 7707 7645 * 5968 210 30 72 chr6 111091589 111092072 -71323170 - L1MC3 LINE L1 -468 7317 6815 2047 173 67 12 chr6 111092072 111092476 -71322766 - MSTB LTR MaLR 0 426 1 5968 210 30 72 chr6 111092476 111093597 -71321645 - L1MC3 LINE L1 -970 6815 5801 954 186 29 0 chr6 111093597 111093801 -71321441 - L1MA3 LINE L1 -2 6303 6094 5968 210 30 72 chr6 111093801 111094086 -71321156 - L1MC3 LINE L1 -1984 5801 5506 580 263 34 38 chr6 111094105 111094314 -71320928 - L1MCa LINE L1 -5482 563 356 667 256 55 32 chr6 111094320 111094584 -71320658 - L1MCa LINE L1 -5813 348 1 218 32 32 0 chr6 111094661 111094692 -71320550 + (CA)n Simple_repeat Simple_repeat 2 33 0 * 234 0 0 0 chr6 111094691 111094717 -71320525 + (TC)n Simple_repeat Simple_repeat 2 27 0 312 377 52 22 chr6 111094748 111094979 -71320263 + L2 LINE L2 2583 2820 -494 231 329 12 0 chr6 111096057 111096139 -71319103 + MIR SINE MIR 178 260 -2 379 202 18 0 chr6 111096365 111096479 -71318763 + (TA)n Simple_repeat Simple_repeat 1 116 0 491 224 7 0 chr6 111096517 111096660 -71318582 + (TA)n Simple_repeat Simple_repeat 1 144 0 236 244 98 0 chr6 111096661 111096743 -71318499 - L1MC4 LINE L1 -1337 6705 6616 26 50 0 0 chr6 111097164 111097204 -71318038 + AT_rich Low_complexity Low_complexity 1 40 0 1703 200 22 48 chr6 111097308 111097708 -71317534 - MLT1B LTR MaLR 0 390 1 182 356 114 15 chr6 111097895 111098027 -71317215 + L2 LINE L2 3107 3251 -21 231 220 0 0 chr6 111098142 111098201 -71317041 - L1MC4 LINE L1 -1339 6703 6645 23 0 0 0 chr6 111099367 111099390 -71315852 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 111099568 111099597 -71315645 + AT_rich Low_complexity Low_complexity 1 29 0 213 264 0 19 chr6 111100480 111100533 -71314709 + CT-rich Low_complexity Low_complexity 3 54 0 289 323 30 0 chr6 111100699 111100798 -71314444 - L2 LINE L2 -4 3309 3208 619 272 116 11 chr6 111101316 111101583 -71313659 - HsTC2a DNA Tc2 -3 739 445 824 198 45 50 chr6 111101583 111101805 -71313437 - MER34 LTR ERV1 -1 541 321 2154 160 45 30 chr6 111101836 111102376 -71312866 + MLT2A2 LTR ERVL 1 554 0 852 227 62 9 chr6 111102376 111102601 -71312641 - MER34 LTR ERV1 -279 263 27 819 320 61 23 chr6 111102639 111103033 -71312209 - HsTC2a DNA Tc2 -314 430 22 1904 138 35 0 chr6 111103743 111104032 -71311210 + AluSq SINE Alu 1 299 -14 1292 202 34 21 chr6 111104198 111104570 -71310672 + Tigger3(Golem) DNA MER2_type 21 3038 0 927 261 138 47 chr6 111104780 111105267 -71309975 + MER65B LTR ERV1 1 531 0 22 0 0 0 chr6 111106143 111106165 -71309077 + AT_rich Low_complexity Low_complexity 1 22 0 2198 95 0 0 chr6 111106165 111106450 -71308792 - AluSc SINE Alu -24 285 1 21 36 0 0 chr6 111107085 111107113 -71308129 + AT_rich Low_complexity Low_complexity 1 28 0 2030 125 3 0 chr6 111107139 111107428 -71307814 - AluSq SINE Alu -23 290 1 572 276 100 13 chr6 111108758 111108957 -71306285 + L1MA9 LINE L1 6015 6240 -72 195 42 0 0 chr6 111108957 111108981 -71306261 + (TA)n Simple_repeat Simple_repeat 1 24 0 572 276 100 13 chr6 111108981 111109020 -71306222 + L1MA9 LINE L1 6240 6274 -38 1592 201 31 57 chr6 111110029 111110290 -71304952 - MER92A LTR ERV1 0 412 165 282 29 0 0 chr6 111110290 111110325 -71304917 + (TG)n Simple_repeat Simple_repeat 1 35 0 1592 201 31 57 chr6 111110325 111110486 -71304756 - MER92A LTR ERV1 -247 165 1 1180 84 30 0 chr6 111110612 111110778 -71304464 + L1P4 LINE L1 5652 5822 -346 1796 151 24 3 chr6 111111626 111111918 -71303324 + AluJb SINE Alu 1 298 -14 892 266 126 23 chr6 111111956 111112257 -71302985 - MLT1E2 LTR MaLR -294 332 1 226 340 21 35 chr6 111112272 111112413 -71302829 + MIR SINE MIR 98 236 -26 200 146 36 36 chr6 111114720 111114775 -71300467 + A-rich Low_complexity Low_complexity 4 58 0 2368 73 0 3 chr6 111114830 111115133 -71300109 + AluY SINE Alu 1 302 -9 24 67 0 0 chr6 111115190 111115235 -71300007 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr6 111115313 111115335 -71299907 + AT_rich Low_complexity Low_complexity 1 22 0 14377 194 54 32 chr6 111116660 111122428 -71292814 + L1PB1 LINE L1 884 6859 -8 701 212 0 8 chr6 111123985 111124117 -71291125 - FLAM_C SINE Alu -2 131 1 333 262 94 88 chr6 111124268 111124403 -71290839 + L1MCb LINE L1 47 180 -5865 3460 191 32 3 chr6 111124403 111125093 -71290149 - MER67C LTR ERV1 0 710 1 333 262 94 88 chr6 111125093 111125319 -71289923 + L1MCb LINE L1 180 410 -5635 355 319 0 0 chr6 111125531 111125625 -71289617 + L1MCb LINE L1 444 537 -5509 1583 238 66 26 chr6 111125708 111126546 -71288696 + L1MCb LINE L1 658 1539 -4887 1523 184 91 6 chr6 111127578 111127695 -71287547 - MER7A DNA MER2_type -2692 346 240 1204 125 43 65 chr6 111127695 111127927 -71287315 + MER30 DNA MER1_type 4 230 0 1523 184 91 6 chr6 111127927 111128129 -71287113 - MER7A DNA MER2_type -2798 240 2 1447 213 30 30 chr6 111128131 111128492 -71286750 + L1MA7 LINE L1 5921 6281 -10 1017 242 45 20 chr6 111128492 111128792 -71286450 + MLT1D LTR MaLR 208 505 0 496 115 0 26 chr6 111128795 111128873 -71286369 - L1ME LINE L1 -520 5646 5571 279 0 0 0 chr6 111128976 111129007 -71286235 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr6 111130223 111130252 -71284990 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 111130615 111130644 -71284598 + AT_rich Low_complexity Low_complexity 1 29 0 557 147 53 0 chr6 111132131 111132226 -71283016 - LTR12 LTR ERV1 0 714 615 378 192 30 20 chr6 111132228 111132327 -71282915 - LTR30 LTR ERV1 -79 643 544 845 154 124 97 chr6 111132331 111132598 -71282644 - LTR12 LTR ERV1 -440 274 1 21 57 0 0 chr6 111132668 111132703 -71282539 + AT_rich Low_complexity Low_complexity 1 35 0 743 164 21 0 chr6 111133399 111133539 -71281703 - L1MA8 LINE L1 -19 6272 6130 1635 147 20 39 chr6 111133543 111134028 -71281214 - L1MA8 LINE L1 -737 5568 5091 3766 153 16 18 chr6 111134029 111134714 -71280528 + L1MA4 LINE L1 5611 6294 -6 495 124 31 21 chr6 111134717 111134814 -71280428 - L1MA8 LINE L1 -145 6146 6049 22 35 0 0 chr6 111134865 111134894 -71280348 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 111134958 111134980 -71280262 + AT_rich Low_complexity Low_complexity 1 22 0 253 282 0 13 chr6 111135187 111135265 -71279977 - HAL1b LINE L1 -610 738 662 235 225 11 79 chr6 111135336 111135425 -71279817 + MER58C DNA MER1_type 48 130 -85 410 133 0 0 chr6 111135492 111135552 -71279690 + MER58C DNA MER1_type 151 210 -5 1906 336 51 21 chr6 111135623 111136713 -71278529 - L2 LINE L2 -158 3155 2034 238 346 63 0 chr6 111137474 111137601 -71277641 + L2 LINE L2 3148 3282 -31 1316 314 25 54 chr6 111137768 111138319 -71276923 + MLT1G LTR MaLR 51 585 -5 401 280 9 9 chr6 111138580 111138687 -71276555 + L2 LINE L2 2034 2140 -1174 29 90 0 0 chr6 111138843 111138921 -71276321 + AT_rich Low_complexity Low_complexity 1 78 0 28 0 0 0 chr6 111140192 111140220 -71275022 + AT_rich Low_complexity Low_complexity 1 28 0 2329 81 3 0 chr6 111140517 111140814 -71274428 - AluSc SINE Alu -11 298 1 275 245 49 20 chr6 111141920 111142022 -71273220 - L1MCc LINE L1 -3060 3881 3777 * 1187 249 98 92 chr6 111142014 111143142 -71272100 - L1MCc LINE L1 -4887 1536 653 1188 254 43 17 chr6 111143215 111143421 -71271821 - L1MCc LINE L1 -5985 438 218 5166 78 10 1 chr6 111143421 111144137 -71271105 - LTR30 LTR ERV1 0 722 1 1188 254 43 17 chr6 111144137 111144276 -71270966 - L1MCc LINE L1 -6205 218 84 35767 56 5 1 chr6 111146592 111151977 -71263265 + L1PA5 LINE L1 749 6150 -4 2115 87 0 11 chr6 111151999 111152311 -71262931 + AluY SINE Alu 1 309 0 291 254 0 0 chr6 111154603 111154666 -71260576 - MER69 DNA AcHobo -2462 64 2 1016 378 53 11 chr6 111154668 111155416 -71259826 + L2 LINE L2 1802 2581 -733 25643 151 12 15 chr6 111155459 111161906 -71253336 - L1PA8 LINE L1 0 6487 1 1951 134 53 39 chr6 111162577 111162936 -71252306 + THE1B LTR MaLR 1 364 0 316 274 80 9 chr6 111163139 111163252 -71251990 - LTR33 LTR ERVL -299 222 102 725 342 46 32 chr6 111163443 111163876 -71251366 + LTR67 LTR ERVL 23 461 -96 282 309 43 0 chr6 111163979 111164073 -71251169 + L1ME LINE L1 5730 5827 -294 28 60 0 15 chr6 111164197 111164231 -71251011 + AT_rich Low_complexity Low_complexity 1 35 -31 1929 127 7 3 chr6 111164231 111164514 -71250728 - AluSx SINE Alu -27 285 2 28 60 0 15 chr6 111164514 111164546 -71250696 + AT_rich Low_complexity Low_complexity 35 66 0 1422 114 5 5 chr6 111164556 111164776 -71250466 - L1PA13 LINE L1 -3 6160 5941 2015 212 33 44 chr6 111164864 111165348 -71249894 + MLT2B1 LTR ERVL 1 480 -40 387 0 0 0 chr6 111165348 111165391 -71249851 + (CA)n Simple_repeat Simple_repeat 2 44 0 2015 212 33 44 chr6 111165391 111165424 -71249818 + MLT2B1 LTR ERVL 480 512 -8 2070 130 3 0 chr6 111166007 111166324 -71248918 + AluSp SINE Alu 1 318 0 279 0 0 0 chr6 111166632 111166663 -71248579 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 143 0 0 chr6 111166666 111166708 -71248534 + LTR66 LTR ERVL 398 439 -171 241 133 33 50 chr6 111166735 111166795 -71248447 - L1MCa LINE L1 -4362 2064 2006 231 322 0 0 chr6 111166736 111166826 -71248416 + L1MC4 LINE L1 6614 6703 -1339 * 279 281 0 0 chr6 111166806 111166895 -71248347 - L1MC4 LINE L1 -1339 6703 6615 238 261 0 23 chr6 111166845 111166933 -71248309 + L1MC4 LINE L1 6617 6702 -1340 * 226 177 0 48 chr6 111166929 111166991 -71248251 - L1MCa LINE L1 -4362 2064 2006 * 326 256 0 0 chr6 111166960 111167050 -71248192 + L1MC4 LINE L1 6614 6703 -1339 252 143 0 0 chr6 111167053 111167095 -71248147 + (TA)n Simple_repeat Simple_repeat 1 42 0 1603 292 38 30 chr6 111167167 111168159 -71247083 + L1ME LINE L1 4508 5514 -650 319 245 138 11 chr6 111168163 111168351 -71246891 + L1MEc LINE L1 2125 2336 -4060 383 327 101 5 chr6 111169251 111169468 -71245774 + MIR SINE MIR 3 240 -22 24 53 0 0 chr6 111169784 111169822 -71245420 + AT_rich Low_complexity Low_complexity 1 38 0 28 0 0 0 chr6 111169965 111169993 -71245249 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 111170025 111170054 -71245188 + AT_rich Low_complexity Low_complexity 1 29 0 208 309 0 74 chr6 111170105 111170186 -71245056 + L3 LINE CR1 1305 1379 -198 442 265 125 19 chr6 111170292 111170556 -71244686 - LTR43 LTR ERV1 -124 478 187 2380 137 6 6 chr6 111171233 111171597 -71243645 - THE1B LTR MaLR 0 364 1 599 252 99 14 chr6 111171948 111172170 -71243072 + L1ME2 LINE L1 5924 6164 0 6679 169 18 29 chr6 111172805 111174114 -71241128 - L1P LINE L1 -1094 5052 3759 760 152 28 0 chr6 111174203 111174348 -71240894 + L1MB1 LINE L1 6019 6167 -1 371 347 52 19 chr6 111174707 111174920 -71240322 + L1ME3A LINE L1 5265 5484 -686 254 338 61 38 chr6 111174988 111175201 -71240041 + L1ME3A LINE L1 5538 5755 -2053 314 232 61 20 chr6 111175273 111175372 -71239870 + L1ME3A LINE L1 5847 5949 -221 30 0 0 0 chr6 111175485 111175515 -71239727 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr6 111176444 111176473 -71238769 + AT_rich Low_complexity Low_complexity 1 29 0 214 270 0 0 chr6 111176769 111176832 -71238410 + T-rich Low_complexity Low_complexity 1 63 0 200 341 97 28 chr6 111176847 111177064 -71238178 - L2 LINE L2 -1882 1432 1201 216 67 0 0 chr6 111177236 111177266 -71237976 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3679 198 32 72 chr6 111177315 111177738 -71237504 - L1MA10 LINE L1 -1 6333 5894 1567 227 36 8 chr6 111177738 111177927 -71237315 - MSTD LTR MaLR 0 396 214 189 0 0 0 chr6 111177927 111177948 -71237294 + (GA)n Simple_repeat Simple_repeat 1 21 0 1567 227 36 8 chr6 111177948 111178142 -71237100 - MSTD LTR MaLR -182 214 2 3679 198 32 72 chr6 111178142 111179512 -71235730 - L1MA10 LINE L1 -440 5894 4616 2226 110 0 0 chr6 111179512 111179803 -71235439 + AluY SINE Alu 3 293 -18 3679 198 32 72 chr6 111179803 111179856 -71235386 - L1MA10 LINE L1 -1718 4616 4562 509 346 66 50 chr6 111179930 111180386 -71234856 - L1M3c LINE L1 -5678 463 1 2690 250 48 50 chr6 111182001 111182246 -71232996 - L1MD2 LINE L1 -11 6348 6104 363 96 0 0 chr6 111182246 111182298 -71232944 + (TA)n Simple_repeat Simple_repeat 2 53 0 2690 250 48 50 chr6 111182298 111183279 -71231963 - L1MD2 LINE L1 -255 6104 5121 905 289 107 11 chr6 111183313 111183836 -71231406 - L1MD2 LINE L1 -1234 4912 4340 1925 134 64 3 chr6 111183836 111184165 -71231077 - MER61C LTR ERV1 0 434 86 320 237 12 0 chr6 111184175 111184269 -71230973 - L1M4 LINE L1 -1788 4358 4264 437 285 0 0 chr6 111184303 111184440 -71230802 - L1M4 LINE L1 -2229 3917 3781 30 59 0 0 chr6 111184646 111184697 -71230545 + AT_rich Low_complexity Low_complexity 1 51 0 24 32 0 0 chr6 111184727 111184758 -71230484 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 111184866 111184887 -71230355 + AT_rich Low_complexity Low_complexity 1 21 0 282 312 43 14 chr6 111184988 111185126 -71230116 - MIR SINE MIR -46 216 75 763 296 139 39 chr6 111185308 111185748 -71229494 - MLT1H LTR MaLR -13 536 53 1750 115 73 0 chr6 111186067 111186328 -71228914 + AluSc SINE Alu 1 280 -29 1363 123 90 0 chr6 111186116 111186329 -71228913 + AluSc SINE Alu 50 321 0 229 100 0 0 chr6 111186329 111186369 -71228873 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 2042 131 3 10 chr6 111188761 111189075 -71226167 + AluSq SINE Alu 1 312 -1 26 0 0 0 chr6 111189529 111189555 -71225687 + AT_rich Low_complexity Low_complexity 1 26 0 28 48 0 0 chr6 111189662 111189704 -71225538 + AT_rich Low_complexity Low_complexity 1 42 0 1394 132 9 9 chr6 111189704 111189917 -71225325 - AluSq SINE Alu -19 294 82 4723 194 70 10 chr6 111189917 111191186 -71224056 - L1MC2 LINE L1 -51 6293 4899 216 67 0 0 chr6 111191186 111191216 -71224026 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 4723 194 70 10 chr6 111191216 111191499 -71223743 - L1MC2 LINE L1 -1445 4899 4635 201 136 45 45 chr6 111191653 111191719 -71223523 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 2988 186 20 22 chr6 111191754 111192346 -71222896 + MER6A DNA MER2_type 15 605 0 24 53 0 0 chr6 111192346 111192384 -71222858 + AT_rich Low_complexity Low_complexity 1 38 0 245 361 14 0 chr6 111194027 111194099 -71221143 - L2 LINE L2 0 3272 3200 357 105 18 18 chr6 111196670 111196727 -71218515 + MLT1A1 LTR MaLR 9 65 -300 630 329 94 51 chr6 111197061 111197456 -71217786 + LTR16C LTR ERVL 80 491 0 407 214 71 0 chr6 111197784 111197882 -71217360 - LTR1B LTR ERV1 0 826 722 * 1443 231 94 23 chr6 111197880 111198358 -71216884 - LTR1B LTR ERV1 -347 479 1 303 232 40 30 chr6 111198613 111198712 -71216530 + Charlie8 DNA MER1_type 308 407 -2010 10310 219 40 19 chr6 111199138 111201788 -71213454 - L1PA15 LINE L1 -917 5229 2524 5281 155 16 0 chr6 111201788 111202705 -71212537 + L1PA15 LINE L1 5226 6156 -9 23 54 0 0 chr6 111202723 111202760 -71212482 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr6 111202791 111202813 -71212429 + AT_rich Low_complexity Low_complexity 1 22 0 328 301 97 37 chr6 111203687 111203903 -71211339 + L1M4 LINE L1 2334 2562 -3584 225 139 0 0 chr6 111204005 111204048 -71211194 + (T)n Simple_repeat Simple_repeat 1 43 0 227 216 68 14 chr6 111204208 111204282 -71210960 + L1MD3 LINE L1 7901 7978 -17 983 318 74 36 chr6 111204291 111204820 -71210422 - MLT1H LTR MaLR 0 549 1 252 232 71 0 chr6 111204878 111204934 -71210308 - L2 LINE L2 0 3313 3254 1399 318 49 22 chr6 111205038 111205594 -71209648 + MLT1E LTR MaLR 1 571 -22 2614 174 36 7 chr6 111205993 111206546 -71208696 - L1MA4 LINE L1 -7 6475 5907 5238 196 67 22 chr6 111206565 111207582 -71207660 - L1MA4 LINE L1 -1577 4751 3654 3591 67 0 6 chr6 111207582 111208057 -71207185 - L1PA5 LINE L1 0 6154 5683 5238 196 67 22 chr6 111208057 111208421 -71206821 - L1MA4 LINE L1 -2674 3654 3308 * 5389 229 34 33 chr6 111208414 111209099 -71206143 - L1MA4 LINE L1 -3611 2717 2034 2116 89 0 60 chr6 111209099 111209415 -71205827 + AluY SINE Alu 1 297 -14 5389 229 34 33 chr6 111209415 111211439 -71203803 - L1MA4 LINE L1 -4294 2034 14 902 201 21 21 chr6 111212574 111212768 -71202474 + L1MA2 LINE L1 15 208 -7357 4635 127 4 1 chr6 111212768 111213486 -71201756 - L1PA14 LINE L1 0 6161 5442 6497 155 24 5 chr6 111213486 111215349 -71199893 + L1MA2 LINE L1 5822 7723 0 1107 308 62 17 chr6 111215539 111215955 -71199287 - L2 LINE L2 -391 2923 2489 183 100 0 0 chr6 111217092 111217122 -71198120 + (A)n Simple_repeat Simple_repeat 1 30 0 4563 111 6 4 chr6 111217367 111217730 -71197512 - L1PB1 LINE L1 -1 6150 5784 333 118 0 0 chr6 111217730 111217781 -71197461 + (TA)n Simple_repeat Simple_repeat 2 52 0 4563 111 6 4 chr6 111217781 111218103 -71197139 - L1PB1 LINE L1 -367 5784 5464 1296 178 44 62 chr6 111218103 111218412 -71196830 + L1P5 LINE L1 5031 5307 -844 198 0 0 0 chr6 111218412 111218434 -71196808 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1296 178 44 62 chr6 111218434 111218603 -71196639 + L1P5 LINE L1 5307 5478 -673 25 31 0 0 chr6 111219466 111219498 -71195744 + AT_rich Low_complexity Low_complexity 1 32 0 2249 56 25 0 chr6 111219776 111220062 -71195180 - AluY SINE Alu -13 298 6 1984 117 0 7 chr6 111220388 111220670 -71194572 + AluSx SINE Alu 14 293 -19 496 169 229 0 chr6 111221231 111221349 -71193893 - MSTA LTR MaLR -28 400 256 2842 162 4 2 chr6 111221349 111221842 -71193400 - MSTA-int LTR MaLR -1157 494 1 1865 143 168 11 chr6 111221842 111222212 -71193030 - MSTA LTR MaLR 0 428 1 2420 231 58 47 chr6 111222215 111223199 -71192043 + MER57-int LTR ERV1 2164 5821 -1504 673 233 30 136 chr6 111223518 111223848 -71191394 + MER57-int LTR ERV1 5907 6201 -1336 1678 281 75 47 chr6 111224400 111225202 -71190040 + MER57-int LTR ERV1 6321 7144 -393 941 238 68 82 chr6 111225208 111225574 -71189668 + MER57A LTR ERV1 42 402 -1 1143 210 16 0 chr6 111225575 111225818 -71189424 + L1MC1 LINE L1 6072 6318 -15 2259 81 0 10 chr6 111225827 111226124 -71189118 + AluY SINE Alu 1 294 -17 23 54 0 0 chr6 111226183 111226220 -71189022 + AT_rich Low_complexity Low_complexity 1 37 0 208 338 50 0 chr6 111226332 111226412 -71188830 + L2 LINE L2 2640 2723 -591 821 288 58 40 chr6 111226423 111226770 -71188472 + L2 LINE L2 2961 3313 0 1308 189 54 31 chr6 111227002 111227352 -71187890 - L1MA8 LINE L1 0 6291 5934 21 0 0 0 chr6 111227354 111227375 -71187867 + AT_rich Low_complexity Low_complexity 1 21 0 240 188 0 87 chr6 111227455 111227524 -71187718 + L1MC4 LINE L1 6641 6703 -1339 21 71 0 0 chr6 111228417 111228459 -71186783 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr6 111228786 111228809 -71186433 + AT_rich Low_complexity Low_complexity 1 23 0 1450 214 71 40 chr6 111229403 111229824 -71185418 - MER57B LTR ERV1 0 434 1 3044 184 40 27 chr6 111229840 111230539 -71184703 - MER67C LTR ERV1 0 710 3 297 0 0 0 chr6 111230610 111230643 -71184599 + (CA)n Simple_repeat Simple_repeat 1 33 0 2108 117 17 0 chr6 111231113 111231413 -71183829 - AluSc SINE Alu -4 305 1 237 250 0 0 chr6 111231765 111231813 -71183429 + CT-rich Low_complexity Low_complexity 3 50 0 221 191 0 21 chr6 111232868 111232915 -71182327 + A-rich Low_complexity Low_complexity 4 49 0 21 57 0 0 chr6 111233273 111233308 -71181934 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr6 111233891 111233921 -71181321 + AT_rich Low_complexity Low_complexity 1 30 0 1151 139 0 0 chr6 111233924 111234118 -71181124 + L1PA13 LINE L1 5168 5361 -785 2374 133 22 5 chr6 111234119 111234524 -71180718 + L1PA13 LINE L1 5752 6163 0 4558 65 10 18 chr6 111234984 111236025 -71179217 + MER11A LTR ERVK 1 1266 0 28 61 0 0 chr6 111236153 111236202 -71179040 + AT_rich Low_complexity Low_complexity 1 49 0 2177 123 0 0 chr6 111236311 111236604 -71178638 - AluSx SINE Alu -19 293 1 21 71 0 0 chr6 111237001 111237043 -71178199 + AT_rich Low_complexity Low_complexity 1 42 0 306 50 0 0 chr6 111237777 111237817 -71177425 + (CAT)n Simple_repeat Simple_repeat 2 41 0 1945 118 0 54 chr6 111237868 111238181 -71177061 + AluSc SINE Alu 1 296 -13 848 210 49 29 chr6 111238566 111238771 -71176471 + MER58A DNA MER1_type 10 218 -6 198 167 0 0 chr6 111238884 111238920 -71176322 + T-rich Low_complexity Low_complexity 1 36 0 24 67 0 0 chr6 111238994 111239039 -71176203 + AT_rich Low_complexity Low_complexity 1 45 0 397 332 102 12 chr6 111239968 111240302 -71174940 - L1ME3A LINE L1 -319 5851 5488 183 42 0 0 chr6 111240308 111240332 -71174910 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3800 159 5 3 chr6 111240928 111241602 -71173640 - L1MA4A LINE L1 0 6303 5629 10806 183 17 5 chr6 111241602 111243760 -71171482 + L1PA13 LINE L1 3129 5311 -835 2773 94 20 5 chr6 111243765 111244158 -71171084 + MLT2A1 LTR ERVL 2 400 -44 318 120 0 0 chr6 111244212 111244262 -71170980 + MLT2A1 LTR ERVL 395 444 0 2409 111 3 3 chr6 111244262 111244630 -71170612 + L1PA13 LINE L1 5312 5679 -489 344 46 92 11 chr6 111244631 111244718 -71170524 + (TTATA)n Simple_repeat Simple_repeat 4 97 0 3024 87 15 46 chr6 111244718 111245199 -71170043 + L1PA13 LINE L1 5694 6159 -4 4464 179 2 1 chr6 111245282 111246068 -71169174 - L1PA15 LINE L1 -16 6852 6066 846 219 107 0 chr6 111246073 111246278 -71168964 - L1PA15 LINE L1 -1938 4911 4685 1066 195 3 91 chr6 111246293 111246601 -71168641 - L1PA15 LINE L1 -4023 2826 2546 1302 226 54 0 chr6 111246694 111246852 -71168390 - AluJo SINE Alu -18 294 113 204 40 0 0 chr6 111246852 111246877 -71168365 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1302 226 54 0 chr6 111246877 111246997 -71168245 - AluJo SINE Alu -199 113 1 29 28 0 0 chr6 111247142 111247178 -71168064 + AT_rich Low_complexity Low_complexity 1 36 0 205 132 19 19 chr6 111247521 111247574 -71167668 + (TA)n Simple_repeat Simple_repeat 1 53 0 978 291 167 7 chr6 111247996 111248416 -71166826 - LTR50 LTR ERVL -302 493 7 297 221 125 0 chr6 111248993 111249097 -71166145 + L1ME3A LINE L1 6046 6162 -8 235 289 0 36 chr6 111249488 111249571 -71165671 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 31 44 0 0 chr6 111250471 111250516 -71164726 + AT_rich Low_complexity Low_complexity 1 45 0 462 311 37 6 chr6 111251976 111252137 -71163105 - MIR SINE MIR -49 213 48 2122 129 0 0 chr6 111252164 111252467 -71162775 + AluSx SINE Alu 1 303 -9 778 351 76 11 chr6 111252768 111253227 -71162015 - MLT1J LTR MaLR -8 503 15 188 196 0 20 chr6 111255015 111255066 -71160176 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 28 48 0 0 chr6 111255196 111255238 -71160004 + AT_rich Low_complexity Low_complexity 1 42 0 709 253 56 0 chr6 111255702 111255900 -71159342 + MER3 DNA MER1_type 1 209 0 21 36 0 0 chr6 111256147 111256175 -71159067 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr6 111257418 111257451 -71157791 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr6 111257487 111257518 -71157724 + AT_rich Low_complexity Low_complexity 1 31 0 236 250 0 0 chr6 111257607 111257659 -71157583 + (TG)n Simple_repeat Simple_repeat 1 52 0 435 242 27 20 chr6 111258307 111258456 -71156786 - L1M4 LINE L1 -1745 4401 4252 768 288 60 25 chr6 111258467 111258582 -71156660 - L1MEc LINE L1 -4416 2706 2597 2378 171 12 16 chr6 111258582 111259008 -71156234 + MSTB LTR MaLR 3 426 0 768 288 60 25 chr6 111259008 111259260 -71155982 - L1MEc LINE L1 -4525 2597 2326 3068 174 30 0 chr6 111259325 111259861 -71155381 + ERVL-B1 LTR ERVL 4781 5332 -432 825 153 0 21 chr6 111259849 111259993 -71155249 + ERVL-B1 LTR ERVL 5617 5757 -7 * 1695 200 32 5 chr6 111259993 111260451 -71154791 + MLT2B1 LTR ERVL 1 520 0 572 273 81 50 chr6 111260476 111260699 -71154543 - L1MEc LINE L1 -4809 2132 1918 378 42 0 0 chr6 111260699 111260747 -71154495 + (TG)n Simple_repeat Simple_repeat 1 48 0 572 273 81 50 chr6 111260747 111260967 -71154275 - L1MEc LINE L1 -5023 1918 1675 361 336 58 39 chr6 111261058 111261418 -71153824 - L1MEc LINE L1 -5794 629 263 269 192 19 0 chr6 111261468 111261520 -71153722 - L1MCa LINE L1 -6274 152 100 1716 214 25 24 chr6 111261742 111262366 -71152876 + MLT2B1 LTR ERVL 1 515 0 23 0 0 0 chr6 111262516 111262539 -71152703 + AT_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr6 111263178 111263242 -71152000 + AT_rich Low_complexity Low_complexity 1 64 0 1083 191 0 11 chr6 111263411 111263599 -71151643 - AluJo SINE Alu -75 237 52 22 0 0 0 chr6 111263710 111263732 -71151510 + AT_rich Low_complexity Low_complexity 1 22 0 383 216 70 113 chr6 111263800 111264013 -71151229 - L1MC4 LINE L1 -1 8041 7838 348 294 4 82 chr6 111264014 111264153 -71151089 - L1MC4 LINE L1 -289 7753 7638 1859 130 7 36 chr6 111264153 111264460 -71150782 + AluSx SINE Alu 5 302 -10 348 294 4 82 chr6 111264460 111264551 -71150691 - L1MC4 LINE L1 -404 7638 7541 21 95 0 0 chr6 111264566 111264629 -71150613 + AT_rich Low_complexity Low_complexity 1 63 0 813 195 85 17 chr6 111264785 111265021 -71150221 - L1MEc LINE L1 -4302 2238 1987 1754 89 11 50 chr6 111265039 111265320 -71149922 + L1PA13 LINE L1 5875 6144 -19 1115 289 23 0 chr6 111265423 111265727 -71149515 + MER93a LTR ERV1 92 402 0 350 254 115 9 chr6 111265727 111265890 -71149352 - L1MEc LINE L1 -4563 1977 1822 327 286 119 27 chr6 111266332 111266517 -71148725 - L1MEc LINE L1 -6128 412 211 4168 169 59 1 chr6 111267763 111268595 -71146647 - L1MA6 LINE L1 -4 6296 5417 4772 177 29 1 chr6 111268604 111269586 -71145656 - L1MA6 LINE L1 -1007 5139 4131 1085 341 82 15 chr6 111269738 111270260 -71144982 - MLT2E LTR ERVL -32 596 40 5056 91 10 0 chr6 111270437 111271118 -71144124 - LTR12 LTR ERV1 0 688 1 22 80 0 0 chr6 111272448 111272498 -71142744 + AT_rich Low_complexity Low_complexity 1 50 0 360 0 0 0 chr6 111272499 111272539 -71142703 + (TG)n Simple_repeat Simple_repeat 2 41 0 207 340 97 28 chr6 111273228 111273372 -71141870 - L2 LINE L2 -7 3306 3153 358 398 32 0 chr6 111273482 111273698 -71141544 - L2 LINE L2 -957 2357 2135 2089 101 10 10 chr6 111275321 111275618 -71139624 - AluSg SINE Alu -13 297 1 21 0 0 0 chr6 111276419 111276440 -71138802 + AT_rich Low_complexity Low_complexity 1 21 0 983 200 195 33 chr6 111276617 111276959 -71138283 + MER51A LTR ERV1 257 640 0 21 0 0 0 chr6 111277195 111277216 -71138026 + AT_rich Low_complexity Low_complexity 1 21 0 368 343 43 31 chr6 111277650 111277904 -71137338 + MLT1H LTR MaLR 23 279 -270 238 322 20 48 chr6 111278326 111278472 -71136770 + L2 LINE L2 2749 2890 -424 442 336 86 34 chr6 111278611 111278903 -71136339 + L2 LINE L2 2988 3294 -19 1329 194 25 22 chr6 111278956 111279270 -71135972 + L1MA10 LINE L1 6011 6325 -9 191 350 12 25 chr6 111279365 111279445 -71135797 - MIR SINE MIR -147 115 37 25 0 0 0 chr6 111281642 111281667 -71133575 + AT_rich Low_complexity Low_complexity 1 25 0 6969 193 101 20 chr6 111282317 111283867 -71131375 - MER52A LTR ERV1 -2 1753 1 373 357 62 18 chr6 111286455 111286682 -71128560 + L1MC/D LINE L1 5500 5736 -2072 29 60 0 0 chr6 111287251 111287301 -71127941 + AT_rich Low_complexity Low_complexity 1 50 0 1079 127 12 6 chr6 111287485 111287651 -71127591 - THE1B LTR MaLR 0 364 198 1691 90 4 0 chr6 111287651 111287885 -71127357 - THE1B-int LTR MaLR -1343 237 3 632 202 0 0 chr6 111287886 111287995 -71127247 - THE1B LTR MaLR 0 364 256 201 74 0 0 chr6 111288280 111288307 -71126935 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 570 337 50 10 chr6 111291091 111291391 -71123851 - MER69 DNA AcHobo -905 321 10 344 325 67 14 chr6 111291705 111291988 -71123254 + L1ME4a LINE L1 5543 5840 -281 303 330 133 23 chr6 111292490 111292708 -71122534 - MIR SINE MIR -1 261 20 23 33 0 0 chr6 111293144 111293174 -71122068 + AT_rich Low_complexity Low_complexity 1 30 0 1853 172 63 5 chr6 111294612 111295007 -71120235 + L1MA8 LINE L1 5768 6185 -106 2470 169 27 13 chr6 111295007 111295458 -71119784 - LTR32 LTR ERVL 0 471 15 372 174 112 0 chr6 111295458 111295556 -71119686 + L1MA8 LINE L1 6181 6289 -2 888 95 61 20 chr6 111298278 111298425 -71116817 + L1PB1 LINE L1 5999 6151 0 1885 122 22 0 chr6 111298976 111299254 -71115988 + AluSp SINE Alu 1 284 -29 315 0 0 0 chr6 111299258 111299293 -71115949 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 592 279 148 27 chr6 111299440 111300070 -71115172 + L1ME3A LINE L1 5282 5949 -213 204 125 0 0 chr6 111300499 111300531 -71114711 + (TC)n Simple_repeat Simple_repeat 1 32 0 635 197 0 61 chr6 111300744 111300876 -71114366 + FLAM_A SINE Alu 1 124 -9 24 0 0 0 chr6 111300876 111300900 -71114342 + AT_rich Low_complexity Low_complexity 1 24 0 1568 120 120 11 chr6 111301347 111301613 -71113629 - AluSg1 SINE Alu -14 295 1 267 194 54 11 chr6 111302242 111302335 -71112907 + (TA)n Simple_repeat Simple_repeat 1 97 0 205 175 0 25 chr6 111303347 111303387 -71111855 + CT-rich Low_complexity Low_complexity 2 40 0 545 189 22 81 chr6 111303388 111303573 -71111669 - Charlie1b DNA MER1_type -22 501 328 1143 179 13 34 chr6 111303573 111303807 -71111435 + L1MA7 LINE L1 5630 5858 -433 1962 185 68 29 chr6 111303807 111304325 -71110917 + MLT2A2 LTR ERVL 1 554 0 1763 177 34 44 chr6 111304325 111304761 -71110481 + L1MA7 LINE L1 5854 6285 -6 1344 229 56 3 chr6 111304779 111305084 -71110158 - Charlie1b DNA MER1_type -201 322 2 1659 154 98 50 chr6 111305760 111306001 -71109241 - Tigger7 DNA MER2_type -2 2485 2257 2042 110 0 27 chr6 111306001 111306302 -71108940 + AluY SINE Alu 1 293 -18 1659 154 98 50 chr6 111306302 111306506 -71108736 - Tigger7 DNA MER2_type -230 2257 68 298 200 18 0 chr6 111306643 111306698 -71108544 - MER58A DNA MER1_type -24 83 28 306 335 76 32 chr6 111307450 111307635 -71107607 + MLT1K LTR MaLR 334 526 -62 380 269 50 34 chr6 111307766 111307885 -71107357 - MER70-int LTR ERVL -1498 4266 4146 225 0 0 0 chr6 111308643 111308668 -71106574 + (T)n Simple_repeat Simple_repeat 1 25 0 847 335 39 15 chr6 111308982 111309391 -71105851 - MER70-int LTR ERVL -3398 2366 1948 200 254 32 32 chr6 111309764 111309827 -71105415 + MER5A DNA MER1_type 22 84 -105 1353 182 87 45 chr6 111309831 111310189 -71105053 + THE1C LTR MaLR 3 375 0 8904 145 20 39 chr6 111310189 111311799 -71103443 + THE1C-int LTR MaLR 1 1580 0 1398 165 65 56 chr6 111311801 111312123 -71103119 + THE1C LTR MaLR 5 329 -46 27 29 0 0 chr6 111314148 111314182 -71101060 + AT_rich Low_complexity Low_complexity 1 34 0 31 0 0 0 chr6 111314215 111314246 -71100996 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 111314535 111314556 -71100686 + AT_rich Low_complexity Low_complexity 1 21 0 1326 229 10 30 chr6 111314560 111314862 -71100380 - AluJo SINE Alu -14 298 3 54 62 0 0 chr6 111314900 111314996 -71100246 + AT_rich Low_complexity Low_complexity 1 96 0 266 299 35 89 chr6 111315136 111315598 -71099644 - L1M4 LINE L1 -1842 4304 3868 1619 142 221 14 chr6 111317278 111317631 -71097611 - MSTA LTR MaLR 0 428 3 197 364 0 0 chr6 111318649 111318704 -71096538 + L2 LINE L2 3247 3301 -12 24 32 0 0 chr6 111319307 111319338 -71095904 + AT_rich Low_complexity Low_complexity 1 31 0 403 332 57 39 chr6 111321168 111321554 -71093688 - MER70-int LTR ERVL -2936 2087 1695 1416 167 10 43 chr6 111322763 111323068 -71092174 - L1MD3 LINE L1 -310 7685 7391 740 271 23 27 chr6 111323070 111323291 -71091951 + MER58A DNA MER1_type 2 221 -3 1311 277 132 29 chr6 111323295 111324083 -71091159 - L1MC4a LINE L1 -605 7180 6312 1679 193 3 3 chr6 111324160 111324465 -71090777 - AluJo SINE Alu -2 310 6 212 100 25 0 chr6 111324641 111324681 -71090561 + (TA)n Simple_repeat Simple_repeat 1 41 0 2782 287 32 30 chr6 111325181 111325701 -71089541 + L1MCa LINE L1 43 491 -5554 1944 141 0 3 chr6 111325701 111326018 -71089224 - AluSx SINE Alu 0 316 1 2782 287 32 30 chr6 111326018 111326542 -71088700 + L1MCa LINE L1 491 1012 -5033 6544 209 66 35 chr6 111326543 111328135 -71087107 + MER52A LTR ERV1 2 1753 -2 571 272 96 63 chr6 111328137 111328552 -71086690 + L1MCa LINE L1 1010 1438 -5126 496 162 22 22 chr6 111328562 111328698 -71086544 + GA-rich Low_complexity Low_complexity 4 139 0 1271 222 48 30 chr6 111328702 111329332 -71085910 + L1MCa LINE L1 1395 2130 -4434 694 287 110 2 chr6 111329427 111329850 -71085392 + L1MCa LINE L1 2296 2809 -3936 1820 194 27 11 chr6 111329857 111330228 -71085014 + LTR45B LTR ERV1 113 489 0 67 102 0 0 chr6 111332002 111332237 -71083005 + AT_rich Low_complexity Low_complexity 1 235 0 34 89 0 0 chr6 111332282 111332372 -71082870 + AT_rich Low_complexity Low_complexity 1 90 0 1926 156 18 24 chr6 111332751 111333090 -71082152 + MER1B DNA MER1_type 1 337 0 1986 149 3 0 chr6 111333129 111333430 -71081812 + AluSx SINE Alu 1 302 -10 252 212 61 0 chr6 111333532 111333598 -71081644 - MLT1J1 LTR MaLR -284 162 93 26 30 0 0 chr6 111333854 111333887 -71081355 + AT_rich Low_complexity Low_complexity 1 33 0 1630 216 26 17 chr6 111334060 111334412 -71080830 - MSTB1 LTR MaLR 0 432 78 6893 219 48 33 chr6 111334421 111335687 -71079555 - MSTB1-int LTR MaLR -9 1642 345 2810 6 0 0 chr6 111335687 111335998 -71079244 - AluYa5 SINE Alu 0 311 1 6893 219 48 33 chr6 111335998 111336349 -71078893 - MSTB1-int LTR MaLR -1306 345 1 2009 170 48 17 chr6 111336349 111336767 -71078475 - MSTB1 LTR MaLR 0 432 2 186 209 0 0 chr6 111337644 111337687 -71077555 + (TG)n Simple_repeat Simple_repeat 2 44 0 32 26 0 0 chr6 111338081 111338120 -71077122 + AT_rich Low_complexity Low_complexity 1 39 0 27 81 0 0 chr6 111338796 111338858 -71076384 + AT_rich Low_complexity Low_complexity 1 62 0 877 244 109 20 chr6 111339223 111339625 -71075617 - Charlie5 DNA MER1_type -2057 555 118 30 83 0 0 chr6 111339745 111339817 -71075425 + AT_rich Low_complexity Low_complexity 1 72 0 4371 176 49 20 chr6 111339939 111341164 -71074078 + L1MA9 LINE L1 4898 6159 -153 1058 304 89 40 chr6 111341218 111341557 -71073685 - Zaphod DNA AcHobo -3309 722 340 2111 90 4 0 chr6 111341557 111341855 -71073387 - AluSc SINE Alu 0 299 1 1058 304 89 40 chr6 111341855 111342096 -71073146 - Zaphod DNA AcHobo -3691 340 112 228 318 19 47 chr6 111342972 111343079 -71072163 + MIR SINE MIR 30 133 -75 1048 139 33 19 chr6 111343219 111343434 -71071808 - L1MA7 LINE L1 0 6291 6074 209 191 0 24 chr6 111344073 111344115 -71071127 + GA-rich Low_complexity Low_complexity 1 41 0 24 91 0 0 chr6 111344148 111344214 -71071028 + AT_rich Low_complexity Low_complexity 1 66 0 204 386 71 38 chr6 111344746 111344930 -71070312 - L2 LINE L2 -4 3268 3079 22 70 0 0 chr6 111345423 111345466 -71069776 + AT_rich Low_complexity Low_complexity 1 43 0 7696 25 0 0 chr6 111346186 111347171 -71068071 + L1PA3 LINE L1 5168 6152 -3 200 93 0 70 chr6 111347880 111347923 -71067319 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 216 0 0 0 chr6 111347955 111347979 -71067263 + (CTA)n Simple_repeat Simple_repeat 3 26 0 350 288 56 25 chr6 111347997 111348157 -71067085 + L1ME3A LINE L1 5465 5629 -533 1143 105 0 15 chr6 111348163 111348852 -71066390 + (TTC)n Simple_repeat Simple_repeat 1 678 0 2045 150 0 0 chr6 111348855 111349149 -71066093 - AluSx SINE Alu -18 294 1 859 308 66 6 chr6 111349191 111349675 -71065567 + L1ME3A LINE L1 5651 6163 -7 398 284 43 67 chr6 111349923 111350131 -71065111 - L1MEc LINE L1 -6172 224 22 200 297 47 0 chr6 111352108 111352172 -71063070 + MER5B DNA MER1_type 112 178 0 705 266 71 6 chr6 111352266 111352605 -71062637 - Charlie5 DNA MER1_type 0 2624 2264 421 237 15 30 chr6 111352685 111352820 -71062422 - MER3 DNA MER1_type -87 122 37 214 360 80 0 chr6 111352883 111353008 -71062234 - MIR SINE MIR -108 154 20 26 0 0 0 chr6 111354474 111354500 -71060742 + AT_rich Low_complexity Low_complexity 1 26 0 228 314 0 47 chr6 111354701 111354787 -71060455 + MIR SINE MIR 48 129 -133 22 70 0 0 chr6 111355027 111355070 -71060172 + AT_rich Low_complexity Low_complexity 1 43 0 548 154 0 0 chr6 111356134 111356225 -71059017 - LTR24B LTR ERV1 -115 461 371 23 68 0 0 chr6 111356465 111356509 -71058733 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr6 111356562 111356586 -71058656 + AT_rich Low_complexity Low_complexity 1 24 0 240 353 120 35 chr6 111358498 111359125 -71056117 + HAL1 LINE L1 12 691 -1816 1240 296 58 51 chr6 111359677 111360651 -71054591 + HAL1 LINE L1 1051 2030 -477 23 33 0 0 chr6 111361723 111361753 -71053489 + AT_rich Low_complexity Low_complexity 1 30 0 1094 208 8 0 chr6 111361760 111362001 -71053241 - L1MA4 LINE L1 -20 6280 6038 312 306 54 33 chr6 111362581 111362823 -71052419 + L1MEc LINE L1 1844 2090 -4306 2702 248 28 11 chr6 111362841 111363760 -71051482 + L1MEc LINE L1 2469 3403 -2812 3338 191 35 1 chr6 111363763 111364424 -71050818 + L1MEc LINE L1 3810 4492 -1723 3999 193 37 49 chr6 111364433 111365857 -71049385 - L1MA4A LINE L1 0 6303 4895 15160 45 3 0 chr6 111365857 111368499 -71046743 + L1PA4 LINE L1 3510 6155 0 3038 206 26 13 chr6 111368512 111369665 -71045577 + L1MA6 LINE L1 4694 6059 -310 473 134 24 0 chr6 111369665 111369747 -71045495 + MER61E LTR ERV1 2 85 -484 230 210 145 0 chr6 111369954 111370016 -71045226 + MER51A LTR ERV1 211 281 -353 524 229 62 47 chr6 111370029 111370330 -71044912 + MER61D LTR ERV1 200 1232 -29 918 182 31 0 chr6 111370403 111370595 -71044647 + L1MA6 LINE L1 6062 6259 -110 7120 138 80 13 chr6 111370614 111371807 -71043435 + THE1C-int LTR MaLR 309 1580 0 1878 143 26 37 chr6 111371807 111372186 -71043056 + THE1C LTR MaLR 1 375 0 600 225 99 40 chr6 111372186 111372439 -71042803 + L1M4 LINE L1 3643 3910 -2236 * 958 257 48 6 chr6 111372436 111372751 -71042491 + L1MB8 LINE L1 5851 6178 0 21 36 0 0 chr6 111372841 111372869 -71042373 + AT_rich Low_complexity Low_complexity 1 28 0 1200 186 0 25 chr6 111372939 111373175 -71042067 + AluJo SINE Alu 64 293 -19 252 0 0 0 chr6 111373176 111373204 -71042038 + (GA)n Simple_repeat Simple_repeat 1 28 0 21 71 0 0 chr6 111373281 111373323 -71041919 + AT_rich Low_complexity Low_complexity 1 42 0 2240 70 0 14 chr6 111373464 111373775 -71041467 + AluY SINE Alu 1 307 0 2366 34 54 3 chr6 111375284 111375580 -71039662 - AluY SINE Alu 0 311 1 22 35 0 0 chr6 111375849 111375878 -71039364 + AT_rich Low_complexity Low_complexity 1 29 0 334 321 57 88 chr6 111376348 111376644 -71038598 + HAL1b LINE L1 392 678 -670 239 362 94 17 chr6 111377170 111377521 -71037721 - L2 LINE L2 -575 2739 2362 23 0 0 0 chr6 111377768 111377791 -71037451 + AT_rich Low_complexity Low_complexity 1 23 0 22 103 0 0 chr6 111377916 111377994 -71037248 + AT_rich Low_complexity Low_complexity 1 78 0 464 82 0 0 chr6 111378321 111378394 -71036848 + Alu SINE Alu 239 311 0 25 31 0 0 chr6 111378561 111378593 -71036649 + AT_rich Low_complexity Low_complexity 1 32 0 1527 77 10 0 chr6 111378704 111378913 -71036329 + L1PA7 LINE L1 5940 6150 -4 224 227 53 0 chr6 111379165 111379240 -71036002 + A-rich Low_complexity Low_complexity 2 80 0 31 26 0 0 chr6 111379596 111379634 -71035608 + AT_rich Low_complexity Low_complexity 1 38 0 2384 211 26 17 chr6 111380308 111380882 -71034360 - L1 LINE L1 -1905 4241 3663 * 2551 221 37 33 chr6 111380881 111381836 -71033406 + L1M2 LINE L1 2450 5497 -670 333 283 0 0 chr6 111381824 111381916 -71033326 + L1PA16 LINE L1 6057 6148 -18 * 1567 165 0 7 chr6 111381922 111382194 -71033048 + L1P5 LINE L1 5479 5748 -408 1881 152 42 33 chr6 111382198 111382559 -71032683 + THE1B LTR MaLR 1 364 0 9838 127 14 3 chr6 111382559 111384011 -71031231 + THE1B-int LTR MaLR 1 1467 -113 1703 191 48 28 chr6 111384029 111384386 -71030856 + THE1B LTR MaLR 1 364 0 271 83 0 181 chr6 111384392 111384464 -71030778 + L1PB4 LINE L1 5754 5812 -344 1930 155 48 3 chr6 111384500 111384854 -71030388 + L1PB4 LINE L1 5785 6154 -2 22 35 0 0 chr6 111385424 111385453 -71029789 + AT_rich Low_complexity Low_complexity 1 29 0 521 262 99 0 chr6 111385761 111385902 -71029340 - MIR SINE MIR -55 207 53 387 282 8 16 chr6 111386082 111386206 -71029036 + MIR SINE MIR 71 193 -69 22 0 0 0 chr6 111386248 111386270 -71028972 + AT_rich Low_complexity Low_complexity 1 22 0 2610 258 80 78 chr6 111386328 111387471 -71027771 + L1MC4a LINE L1 6014 7162 -646 447 120 0 0 chr6 111387471 111387546 -71027696 + L1MA4 LINE L1 6222 6296 -4 2610 258 80 78 chr6 111387546 111387934 -71027308 + L1MC4a LINE L1 7162 7548 -260 1096 155 11 11 chr6 111387945 111388132 -71027110 + AluSg/x SINE Alu 109 295 -17 409 192 26 53 chr6 111388148 111388299 -71026943 + L1MC4a LINE L1 7657 7803 -5 246 32 0 0 chr6 111388349 111388380 -71026862 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1918 287 30 17 chr6 111388535 111389257 -71025985 + L1ME3A LINE L1 259 990 -5406 1469 236 102 38 chr6 111389305 111389390 -71025852 + L1ME3A LINE L1 4565 4643 -1572 2118 108 0 3 chr6 111389390 111389685 -71025557 - AluY SINE Alu -17 294 1 1469 236 102 38 chr6 111389685 111390136 -71025106 + L1ME3A LINE L1 4643 5143 -1072 1365 216 121 51 chr6 111390136 111390195 -71025047 - MLT2B1 LTR ERVL 0 520 467 333 0 0 0 chr6 111390195 111390232 -71025010 + (TG)n Simple_repeat Simple_repeat 1 37 0 1365 216 121 51 chr6 111390232 111390658 -71024584 - MLT2B1 LTR ERVL -53 467 1 1469 236 102 38 chr6 111390658 111390697 -71024545 + L1ME3A LINE L1 5143 5178 -1037 2223 125 0 0 chr6 111390769 111391081 -71024161 + AluSq SINE Alu 1 312 -1 33063 56 3 1 chr6 111391092 111396222 -71019020 + L1PA5 LINE L1 10 6464 -5 1175 237 167 21 chr6 111396216 111396686 -71018556 + L1ME3A LINE L1 5257 5870 -369 * 2021 200 22 76 chr6 111396686 111397192 -71018050 + MLT2B1 LTR ERVL 1 476 -44 358 36 55 0 chr6 111397192 111397247 -71017995 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2021 200 22 76 chr6 111397247 111397290 -71017952 + MLT2B1 LTR ERVL 476 520 0 1175 237 167 21 chr6 111397290 111397478 -71017764 + L1ME3A LINE L1 5870 6029 -210 325 284 95 7 chr6 111397506 111397654 -71017588 - MLT1I LTR MaLR -236 173 13 193 284 45 45 chr6 111398798 111398865 -71016377 - MIR SINE MIR -183 79 13 355 306 218 8 chr6 111399105 111399366 -71015876 - L2 LINE L2 -16 3297 2982 21 36 0 0 chr6 111399418 111399446 -71015796 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 111399684 111399707 -71015535 + AT_rich Low_complexity Low_complexity 1 23 0 1656 129 108 4 chr6 111399737 111400015 -71015227 - AluSg1 SINE Alu -1 308 2 25 0 0 28 chr6 111400793 111400813 -71014429 + AT_rich Low_complexity Low_complexity 1 21 -14 1755 101 116 7 chr6 111400813 111401090 -71014152 + AluSc SINE Alu 1 307 -2 25 0 0 28 chr6 111401090 111401105 -71014137 + AT_rich Low_complexity Low_complexity 21 35 0 1760 133 14 4 chr6 111402102 111402362 -71012880 - AluSg SINE Alu 0 392 126 221 0 35 0 chr6 111402362 111402391 -71012851 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1760 133 14 4 chr6 111402391 111402519 -71012723 - AluSg SINE Alu -266 126 1 192 289 96 36 chr6 111402710 111402793 -71012449 + L2 LINE L2 3185 3272 0 29 28 0 0 chr6 111403249 111403285 -71011957 + AT_rich Low_complexity Low_complexity 1 36 0 270 164 0 0 chr6 111404256 111404311 -71010931 + (TG)n Simple_repeat Simple_repeat 2 56 0 2183 123 0 0 chr6 111405403 111405711 -71009531 - AluSx SINE Alu -4 308 1 1456 220 76 83 chr6 111406495 111407403 -71007839 + LTR28 LTR ERV1 1 1020 0 198 381 105 0 chr6 111407996 111408101 -71007141 + L2 LINE L2 3197 3312 -1 477 314 57 5 chr6 111408219 111408413 -71006829 + MIR SINE MIR 59 262 0 27 29 0 0 chr6 111408472 111408506 -71006736 + AT_rich Low_complexity Low_complexity 1 34 0 761 273 81 14 chr6 111410425 111410722 -71004520 - MER5C DNA MER1_type -6 318 2 201 74 0 0 chr6 111412098 111412125 -71003117 + (TAA)n Simple_repeat Simple_repeat 1 27 0 306 0 0 0 chr6 111413300 111413334 -71001908 + (CA)n Simple_repeat Simple_repeat 1 34 0 306 73 0 0 chr6 111414414 111414455 -71000787 + (CA)n Simple_repeat Simple_repeat 2 42 0 320 135 0 0 chr6 111414874 111414926 -71000316 - MADE1 DNA Mariner -28 52 1 329 167 42 0 chr6 111417674 111417746 -70997496 - L1M4 LINE L1 -1460 4686 4612 26 0 0 0 chr6 111418686 111418712 -70996530 + AT_rich Low_complexity Low_complexity 1 26 0 1036 292 28 47 chr6 111419572 111419792 -70995450 + L1M4 LINE L1 44 267 -6275 2104 135 0 0 chr6 111419792 111420096 -70995146 + AluSx SINE Alu 6 309 -3 1036 292 28 47 chr6 111420096 111420341 -70994901 + L1M4 LINE L1 267 500 -6042 273 283 25 76 chr6 111420385 111420583 -70994659 - MER57A LTR ERV1 -210 193 6 1505 190 41 36 chr6 111420645 111421009 -70994233 + MER47A DNA MER2_type 1 366 0 998 232 126 89 chr6 111421070 111421506 -70993736 - MER41B LTR ERV1 -34 601 150 2846 210 7 7 chr6 111422081 111422637 -70992605 + MER41D LTR ERV1 1 556 -1 2740 165 90 107 chr6 111423232 111424464 -70990778 + MER49-int LTR ERV1 1722 4173 -2158 719 201 5 92 chr6 111424660 111424844 -70990398 + MER49-int LTR ERV1 3786 3953 -4167 467 185 269 0 chr6 111425033 111425152 -70990090 + MER49-int LTR ERV1 5984 6134 -624 1542 208 67 17 chr6 111425157 111425513 -70989729 + MER49-int LTR ERV1 6384 6757 -1 979 194 26 81 chr6 111425525 111425834 -70989408 + MER49 LTR ERV1 3 294 -629 541 184 18 18 chr6 111425814 111425923 -70989319 + MER49 LTR ERV1 615 723 -200 * 1231 171 38 17 chr6 111425924 111426181 -70989061 + MER66-int LTR ERV1 4608 6271 -1485 2042 283 60 16 chr6 111426235 111427233 -70988009 - L1M4 LINE L1 -2019 4127 3086 1839 294 20 30 chr6 111427371 111428068 -70987174 - L1MCb LINE L1 -5353 692 3 412 230 54 14 chr6 111428099 111428247 -70986995 - L1M4 LINE L1 -985 5161 5008 24 77 0 0 chr6 111430024 111430076 -70985166 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr6 111431338 111431360 -70983882 + AT_rich Low_complexity Low_complexity 1 22 0 403 240 33 25 chr6 111431508 111431629 -70983613 - MIR SINE MIR -59 203 82 27 29 0 0 chr6 111432083 111432117 -70983125 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr6 111432173 111432201 -70983041 + AT_rich Low_complexity Low_complexity 1 28 0 255 333 10 0 chr6 111432510 111432609 -70982633 + L1MCc LINE L1 1007 1106 -5317 807 237 71 89 chr6 111432895 111433287 -70981955 + L1MCc LINE L1 1128 1512 -4911 453 314 109 37 chr6 111433559 111434275 -70980967 + L1MCc LINE L1 1977 2779 -4343 243 103 0 0 chr6 111434275 111434314 -70980928 + (CA)n Simple_repeat Simple_repeat 2 40 0 453 314 109 37 chr6 111434314 111434545 -70980697 + L1MCc LINE L1 2779 2992 -4130 3438 98 0 4 chr6 111434608 111435130 -70980112 + L1PA12 LINE L1 5684 6203 0 1269 174 0 0 chr6 111435163 111435358 -70979884 - AluJb SINE Alu -35 277 83 23 0 0 0 chr6 111435364 111435387 -70979855 + AT_rich Low_complexity Low_complexity 1 23 0 2556 272 97 28 chr6 111435412 111436465 -70978777 + L1MEc LINE L1 45 1170 -5226 4477 113 200 20 chr6 111436587 111437913 -70977329 - pTR5 LTR ERV1 0 2438 743 1375 277 58 26 chr6 111437974 111438751 -70976491 + L1MEc LINE L1 1409 2210 -4186 2063 191 13 26 chr6 111438756 111439216 -70976026 - L1MA9 LINE L1 -149 6163 5710 189 74 0 0 chr6 111439423 111439450 -70975792 + (GA)n Simple_repeat Simple_repeat 1 27 0 449 219 202 33 chr6 111439687 111439765 -70975477 - LTR50 LTR ERVL 0 795 732 1897 198 63 0 chr6 111439765 111440164 -70975078 - MSTB LTR MaLR -2 424 1 449 219 202 33 chr6 111440164 111440268 -70974974 - LTR50 LTR ERVL -63 732 582 259 318 82 0 chr6 111440341 111440426 -70974816 - LTR50 LTR ERVL -474 321 230 1388 180 19 41 chr6 111440430 111440746 -70974496 - L1MA9 LINE L1 -186 6126 5818 1958 200 60 72 chr6 111440753 111441253 -70973989 - MLT1D LTR MaLR -11 494 1 468 261 174 19 chr6 111441283 111441490 -70973752 - LTR50 LTR ERVL -555 240 2 1742 174 48 31 chr6 111441489 111441846 -70973396 + MLT1A1 LTR MaLR 3 365 0 261 0 0 0 chr6 111441881 111441910 -70973332 + (CA)n Simple_repeat Simple_repeat 2 30 0 32 0 0 0 chr6 111442114 111442146 -70973096 + AT_rich Low_complexity Low_complexity 1 32 0 23 68 0 0 chr6 111442583 111442627 -70972615 + AT_rich Low_complexity Low_complexity 1 44 0 330 194 0 0 chr6 111442861 111442923 -70972319 + L1MC4 LINE L1 6644 6705 -1337 2305 78 0 0 chr6 111442938 111443234 -70972008 - AluY SINE Alu -15 296 1 27 29 0 0 chr6 111443240 111443274 -70971968 + AT_rich Low_complexity Low_complexity 1 34 0 611 284 94 56 chr6 111443450 111444109 -70971133 - L1ME3A LINE L1 -219 5951 5268 634 232 70 80 chr6 111444432 111444932 -70970310 - L1ME3A LINE L1 -1231 4915 4415 27 29 0 0 chr6 111445642 111445676 -70969566 + AT_rich Low_complexity Low_complexity 1 34 0 4929 157 18 6 chr6 111446530 111447539 -70967703 + L1PA16 LINE L1 5137 6158 -8 24 0 0 0 chr6 111447609 111447633 -70967609 + AT_rich Low_complexity Low_complexity 1 24 0 1295 196 9 77 chr6 111448015 111448342 -70966900 - AluJo SINE Alu -7 305 1 463 209 139 118 chr6 111448500 111448906 -70966336 - MER110 LTR ERV1 -8 460 80 2093 135 21 0 chr6 111449559 111449893 -70965349 + L1PB1 LINE L1 5758 6098 -53 9187 168 56 35 chr6 111450006 111451849 -70963393 + Tigger2 DNA MER2_type 58 1939 -779 17731 179 31 19 chr6 111451856 111455218 -70960024 + L1M1 LINE L1 62 3463 -4102 440 244 12 12 chr6 111455229 111455315 -70959927 + Tigger2 DNA MER2_type 2623 2708 -10 350 205 0 2 chr6 111456800 111456875 -70958367 + FRAM/FAM SINE Alu 10 74 -101 2086 154 0 20 chr6 111456875 111457231 -70958011 + THE1C-int LTR MaLR 82 430 -1150 9729 96 45 0 chr6 111457264 111459491 -70955751 - L1PA7 LINE L1 -5 6149 3857 3568 128 4 2 chr6 111459492 111460039 -70955203 + L1PA7 LINE L1 4719 5266 -2299 6712 157 16 33 chr6 111460045 111460884 -70954358 + THE1C-int LTR MaLR 426 1241 -339 1724 185 0 0 chr6 111460884 111461160 -70954082 + AluSx SINE Alu 1 276 -36 6712 157 16 33 chr6 111461160 111461495 -70953747 + THE1C-int LTR MaLR 1241 1580 0 1633 170 29 47 chr6 111461495 111461877 -70953365 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr6 111462033 111462059 -70953183 + AT_rich Low_complexity Low_complexity 1 26 0 270 305 0 0 chr6 111462571 111462653 -70952589 + MERVL LTR ERVL 2701 2782 -2703 341 362 79 0 chr6 111463067 111463244 -70951998 - LTR50 LTR ERVL -603 192 2 368 244 35 26 chr6 111463265 111463380 -70951862 + L1ME LINE L1 3 118 -5952 1728 102 8 24 chr6 111463380 111463635 -70951607 + AluSc SINE Alu 59 309 0 1808 279 100 50 chr6 111463771 111463884 -70951358 + L1MC1 LINE L1 1 107 -6433 2480 70 0 19 chr6 111463884 111464200 -70951042 + AluSg SINE Alu 1 310 0 1808 279 100 50 chr6 111464200 111465298 -70949944 + L1MC1 LINE L1 107 1349 -5191 * 3998 257 69 40 chr6 111465290 111465599 -70949643 + L1MC1 LINE L1 3326 3625 -2915 1221 41 0 0 chr6 111465599 111465745 -70949497 - L1PA5 LINE L1 -9 6145 6000 3998 257 69 40 chr6 111465745 111466298 -70948944 + L1MC1 LINE L1 3625 4161 -2379 1608 220 88 0 chr6 111466298 111466662 -70948580 - MSTD LTR MaLR 0 396 1 3998 257 69 40 chr6 111466662 111466901 -70948341 + L1MC1 LINE L1 4161 4392 -2148 1512 183 40 81 chr6 111466901 111467348 -70947894 + MSTB1 LTR MaLR 1 429 -3 3998 257 69 40 chr6 111467348 111468205 -70947037 + L1MC1 LINE L1 4392 5342 -1198 1146 73 22 11 chr6 111468217 111468266 -70946976 + (GAAA)n Simple_repeat Simple_repeat 1 229 0 1146 73 22 11 chr6 111468266 111468444 -70946798 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr6 111468845 111468868 -70946374 + AT_rich Low_complexity Low_complexity 1 23 0 204 398 0 23 chr6 111469571 111469699 -70945543 - L2 LINE L2 -561 2753 2629 198 118 0 0 chr6 111471504 111471538 -70943704 + (TA)n Simple_repeat Simple_repeat 1 34 0 509 351 13 36 chr6 111471649 111471874 -70943368 - MIR SINE MIR -3 259 40 23 0 0 0 chr6 111472164 111472187 -70943055 + AT_rich Low_complexity Low_complexity 1 23 0 2237 84 7 3 chr6 111472993 111473291 -70941951 - AluY SINE Alu -12 299 1 28 0 0 0 chr6 111473343 111473371 -70941871 + AT_rich Low_complexity Low_complexity 1 28 0 352 357 49 0 chr6 111474130 111474273 -70940969 - MIR3 SINE MIR -53 155 6 273 225 180 0 chr6 111474494 111474583 -70940659 - MER5C DNA MER1_type 0 324 220 1325 305 73 7 chr6 111474585 111475037 -70940205 + L1M4b LINE L1 2 483 -6376 2316 214 41 69 chr6 111475187 111475988 -70939254 + LTR1 LTR ERV1 7 785 0 622 288 60 30 chr6 111475988 111476221 -70939021 + L1M4b LINE L1 642 881 -5978 * 5183 183 29 23 chr6 111476216 111477343 -70937899 + L1MC1 LINE L1 5599 8177 -2 1057 258 100 8 chr6 111477537 111478118 -70937124 + L1M4b LINE L1 2663 3250 -3707 506 216 58 14 chr6 111478120 111478259 -70936983 + L1ME1 LINE L1 1255 1399 -5039 230 296 11 0 chr6 111478280 111478368 -70936874 + L1ME1 LINE L1 4578 4666 -2291 2202 174 38 21 chr6 111478368 111478787 -70936455 - MSTB LTR MaLR 0 426 1 267 277 178 10 chr6 111478787 111478989 -70936253 + L1ME1 LINE L1 4662 4897 -2060 433 259 99 12 chr6 111479042 111479204 -70936038 + L1ME1 LINE L1 6560 6735 -242 201 237 0 0 chr6 111479230 111479289 -70935953 + (CATA)n Simple_repeat Simple_repeat 3 61 0 342 303 80 15 chr6 111479289 111479511 -70935731 + L1ME1 LINE L1 6736 6973 -2 26 30 0 0 chr6 111479634 111479667 -70935575 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr6 111479700 111479731 -70935511 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr6 111479758 111479810 -70935432 + AT_rich Low_complexity Low_complexity 1 52 0 1716 115 0 61 chr6 111481690 111481996 -70933246 - AluSq SINE Alu 0 312 24 396 351 71 75 chr6 111483666 111484185 -70931057 + L1MEd LINE L1 12 528 -5591 280 278 41 41 chr6 111484321 111484490 -70930752 - HAL1 LINE L1 -935 1572 1404 24 0 0 0 chr6 111484490 111484514 -70930728 + AT_rich Low_complexity Low_complexity 1 24 0 1130 203 54 8 chr6 111484514 111484775 -70930467 - AluJo SINE Alu -39 273 1 210 71 0 0 chr6 111484894 111484922 -70930320 + (TA)n Simple_repeat Simple_repeat 1 28 0 2164 206 29 58 chr6 111485222 111485808 -70929434 - L1MC3 LINE L1 -173 7681 7113 204 233 0 0 chr6 111485808 111485851 -70929391 + (TATG)n Simple_repeat Simple_repeat 3 45 0 365 220 50 0 chr6 111485883 111485983 -70929259 - L1MC3 LINE L1 -2045 5809 5705 22 56 0 0 chr6 111486145 111486181 -70929061 + AT_rich Low_complexity Low_complexity 1 36 0 195 291 81 23 chr6 111486303 111486389 -70928853 - MIR SINE MIR -101 161 71 270 280 140 0 chr6 111488004 111488154 -70927088 - L1MC3 LINE L1 -1483 4732 4562 27 0 0 0 chr6 111488369 111488396 -70926846 + AT_rich Low_complexity Low_complexity 1 27 0 998 329 27 8 chr6 111488838 111489312 -70925930 - L1MC3 LINE L1 -5861 535 53 37 52 0 0 chr6 111489643 111489701 -70925541 + AT_rich Low_complexity Low_complexity 1 58 0 2147 100 10 6 chr6 111490764 111491075 -70924167 + AluSx SINE Alu 1 312 0 24 0 0 0 chr6 111491562 111491586 -70923656 + AT_rich Low_complexity Low_complexity 1 24 0 1523 144 4 4 chr6 111491596 111491832 -70923410 + AluSx SINE Alu 1 236 -76 2246 108 3 0 chr6 111493326 111493633 -70921609 - AluSq SINE Alu -3 310 3 327 49 0 0 chr6 111494042 111494083 -70921159 + (TG)n Simple_repeat Simple_repeat 2 42 0 214 159 29 29 chr6 111494840 111494909 -70920333 + CT-rich Low_complexity Low_complexity 2 70 0 280 329 54 36 chr6 111495029 111495196 -70920046 + L2 LINE L2 2892 3061 -252 180 347 27 13 chr6 111495227 111495302 -70919940 + L2 LINE L2 3187 3262 -10 1719 175 24 68 chr6 111495444 111495856 -70919386 - MSTD LTR MaLR 0 396 3 381 328 86 14 chr6 111496991 111497616 -70917626 - L1M4 LINE L1 -1198 4948 4279 423 281 20 14 chr6 111498486 111498632 -70916610 - MIR SINE MIR -2 260 114 377 286 0 0 chr6 111498764 111498855 -70916387 - MER110 LTR ERV1 -209 282 192 28 0 0 0 chr6 111499942 111499970 -70915272 + AT_rich Low_complexity Low_complexity 1 28 0 6124 230 77 3 chr6 111499982 111501297 -70913945 + L1M2 LINE L1 8 1419 -5430 * 12400 200 47 16 chr6 111501280 111504528 -70910714 + L1M2 LINE L1 2623 5962 -886 5673 172 30 32 chr6 111504530 111504857 -70910385 + L1MA4A LINE L1 4126 4452 -1851 1524 203 125 23 chr6 111504857 111505242 -70910000 + MSTA LTR MaLR 5 428 0 8749 160 6 35 chr6 111505244 111506864 -70908378 + MSTA-int LTR MaLR 3 1576 -4 1420 203 162 14 chr6 111506870 111507240 -70908002 + MSTA LTR MaLR 4 428 0 5673 172 30 32 chr6 111507240 111508389 -70906853 + L1MA4A LINE L1 4458 5609 -694 1823 213 70 7 chr6 111508389 111508792 -70906450 - MSTA LTR MaLR 0 428 1 5673 172 30 32 chr6 111508792 111509259 -70905983 + L1MA4A LINE L1 5609 6083 -220 1667 194 7 0 chr6 111509259 111509558 -70905684 - AluSx SINE Alu 0 312 12 5673 172 30 32 chr6 111509558 111509774 -70905468 + L1MA4A LINE L1 6083 6298 -5 1709 171 12 54 chr6 111510141 111510534 -70904708 - MER67C LTR ERV1 -246 268 1 502 126 90 45 chr6 111510829 111510940 -70904302 + MER4A LTR ERV1 1 116 -548 1540 146 36 84 chr6 111510959 111511267 -70903975 + MER4A LTR ERV1 372 664 0 360 291 165 28 chr6 111511268 111511450 -70903792 - L2 LINE L2 -299 3014 2808 368 256 12 0 chr6 111511494 111511576 -70903666 + MER45A DNA AcHobo 42 124 -54 10250 100 5 9 chr6 111511649 111511665 -70903577 + L1P LINE L1 3574 3589 -2557 6294 70 3 5 chr6 111511665 111512334 -70902908 - L1PA7 LINE L1 -3 6151 5531 2202 113 0 0 chr6 111512334 111512635 -70902607 - AluSc SINE Alu -8 301 1 6294 70 3 5 chr6 111512635 111513132 -70902110 - L1PA7 LINE L1 -623 5531 5034 10250 100 5 9 chr6 111513132 111513501 -70901741 + L1P LINE L1 3589 3958 -2188 2337 71 7 0 chr6 111513501 111513796 -70901446 - AluY SINE Alu -14 297 1 10250 100 5 9 chr6 111513796 111514885 -70900357 + L1P LINE L1 3958 5043 -1103 271 208 26 13 chr6 111514904 111514981 -70900261 - L1M4 LINE L1 -1446 4700 4623 208 211 0 0 chr6 111514981 111515019 -70900223 + (ATG)n Simple_repeat Simple_repeat 1 38 0 2041 267 78 21 chr6 111515409 111516166 -70899076 - L1MC3 LINE L1 -1619 6166 5367 829 211 0 0 chr6 111516166 111516322 -70898920 - MSTC LTR MaLR 0 428 273 1162 276 19 14 chr6 111516322 111516749 -70898493 - L1MC3 LINE L1 -2537 3609 3181 369 285 55 106 chr6 111516802 111517037 -70898205 - MIR SINE MIR 0 262 40 28 29 0 0 chr6 111517802 111517837 -70897405 + AT_rich Low_complexity Low_complexity 1 35 0 2394 90 0 0 chr6 111517837 111518148 -70897094 - AluY SINE Alu 0 311 1 1823 27 14 0 chr6 111518869 111519090 -70896152 - L1PA4 LINE L1 -1786 4360 4137 8155 44 20 0 chr6 111519090 111520862 -70894380 + L1PA4 LINE L1 4361 6153 -2 237 125 87 48 chr6 111521877 111521981 -70893261 + (TTAA)n Simple_repeat Simple_repeat 3 110 0 2198 196 33 17 chr6 111522422 111522841 -70892401 - MSTB LTR MaLR 0 426 1 1769 171 68 78 chr6 111523952 111524390 -70890852 - MLT1C LTR MaLR 0 467 34 207 0 0 0 chr6 111524390 111524413 -70890829 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2204 244 82 22 chr6 111524809 111525479 -70889763 + L1MB7 LINE L1 2596 3343 -2803 2096 188 39 5 chr6 111525479 111525893 -70889349 - MSTA LTR MaLR 0 428 1 2204 244 82 22 chr6 111525893 111526190 -70889052 + L1MB7 LINE L1 3343 3621 -2525 1253 202 104 23 chr6 111526186 111526533 -70888709 + L1MB7 LINE L1 5682 6056 -128 * 249 294 153 0 chr6 111526567 111526652 -70888590 + L1MEc LINE L1 171 268 -6128 1375 255 87 5 chr6 111526653 111527069 -70888173 + L1MEc LINE L1 520 969 -5427 223 133 17 17 chr6 111527070 111527130 -70888112 + (TA)n Simple_repeat Simple_repeat 2 61 0 964 280 38 38 chr6 111527183 111527583 -70887659 + L1ME1 LINE L1 5762 6161 -5 524 266 53 18 chr6 111527658 111528107 -70887135 + L1ME2 LINE L1 5470 5932 -242 370 185 62 19 chr6 111528125 111528287 -70886955 + (TA)n Simple_repeat Simple_repeat 2 170 0 507 297 0 0 chr6 111528343 111528498 -70886744 + L1ME2 LINE L1 5998 6152 -12 253 250 0 28 chr6 111528498 111528570 -70886672 + MER21A LTR ERV1 1 70 -861 1647 158 75 39 chr6 111528583 111528945 -70886297 + THE1C LTR MaLR 1 375 0 6363 166 18 48 chr6 111528947 111530184 -70885058 + THE1C-int LTR MaLR 3 1202 -378 1921 143 73 27 chr6 111530184 111530513 -70884729 - THE1B LTR MaLR 0 364 21 2849 121 129 0 chr6 111530514 111530970 -70884272 - THE1-int LTR MaLR -814 766 252 1872 221 87 19 chr6 111530970 111531453 -70883789 + MER21B LTR ERV1 348 863 0 1808 143 55 3 chr6 111531516 111531809 -70883433 + AluSx SINE Alu 1 308 -4 436 359 78 64 chr6 111531981 111532405 -70882837 + L2 LINE L2 2838 3267 -5 205 156 0 0 chr6 111533168 111533200 -70882042 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 23 0 0 0 chr6 111533502 111533525 -70881717 + AT_rich Low_complexity Low_complexity 1 23 0 1705 194 45 0 chr6 111533993 111534323 -70880919 - MER7A DNA MER2_type 0 346 4 378 338 45 16 chr6 111534434 111534622 -70880620 + MIR SINE MIR 18 212 -50 282 266 0 0 chr6 111535262 111535439 -70879803 + (TA)n Simple_repeat Simple_repeat 2 178 0 249 108 0 0 chr6 111535574 111535611 -70879631 + (TA)n Simple_repeat Simple_repeat 2 38 0 350 243 78 0 chr6 111536810 111536913 -70878329 + Charlie1 DNA MER1_type 60 170 -2591 * 1129 216 65 48 chr6 111536912 111537096 -70878146 + Charlie1 DNA MER1_type 2351 2530 -231 1998 154 0 0 chr6 111537096 111537395 -70877847 - AluSx SINE Alu -9 303 5 1129 216 65 48 chr6 111537395 111537609 -70877633 + Charlie1 DNA MER1_type 2530 2756 -5 479 299 17 29 chr6 111538148 111538322 -70876920 + L2 LINE L2 650 821 -2493 2220 144 27 16 chr6 111538738 111539107 -70876135 + THE1C LTR MaLR 1 373 -2 7406 134 144 26 chr6 111539112 111539160 -70876082 + THE1C-int LTR MaLR 1 42 -1538 2170 130 0 0 chr6 111539160 111539460 -70875782 + AluSq SINE Alu 6 305 -8 7406 134 144 26 chr6 111539460 111540824 -70874418 + THE1C-int LTR MaLR 42 1580 0 2269 139 19 16 chr6 111540824 111541198 -70874044 + THE1C LTR MaLR 1 375 0 216 67 0 0 chr6 111541335 111541365 -70873877 + (TCC)n Simple_repeat Simple_repeat 2 31 0 32 0 0 0 chr6 111541463 111541495 -70873747 + AT_rich Low_complexity Low_complexity 1 32 0 661 252 79 5 chr6 111542650 111542864 -70872378 + MER5C DNA MER1_type 6 235 -89 531 259 82 6 chr6 111542865 111542991 -70872251 + MLT1B LTR MaLR 1 138 -252 1198 195 0 39 chr6 111542991 111543057 -70872185 - MLT1A1 LTR MaLR 0 365 298 265 59 0 0 chr6 111543057 111543091 -70872151 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1649 169 0 44 chr6 111543091 111543386 -70871856 - AluJo SINE Alu -1 315 1 1198 195 0 39 chr6 111543386 111543549 -70871693 - MLT1A1 LTR MaLR -65 300 144 773 268 26 0 chr6 111543620 111543814 -70871428 + MLT1B LTR MaLR 192 390 0 2083 116 0 0 chr6 111544084 111544369 -70870873 - AluSg SINE Alu 0 310 26 208 388 60 0 chr6 111544455 111544589 -70870653 + L2 LINE L2 3160 3301 -12 23 78 0 0 chr6 111544685 111544736 -70870506 + AT_rich Low_complexity Low_complexity 1 51 0 2290 165 12 5 chr6 111545031 111545443 -70869799 - L1PA16 LINE L1 -9 6157 5743 800 335 38 76 chr6 111545649 111546363 -70868879 + L2 LINE L2 2206 2892 -422 456 295 69 35 chr6 111546433 111546749 -70868493 + MLT1F1 LTR MaLR 8 335 -232 449 299 84 14 chr6 111546734 111546948 -70868294 + LTR33 LTR ERVL 280 508 -13 * 220 184 0 0 chr6 111547228 111547266 -70867976 + (CA)n Simple_repeat Simple_repeat 1 38 0 428 311 67 22 chr6 111547324 111547511 -70867731 - MLT1L LTR MaLR -72 543 343 1696 179 10 3 chr6 111547511 111547807 -70867435 - AluJb SINE Alu -14 298 1 428 311 67 22 chr6 111547807 111547844 -70867398 - MLT1L LTR MaLR -272 343 309 1475 206 163 43 chr6 111547847 111548308 -70866934 - LTR1B LTR ERV1 0 826 311 653 223 35 35 chr6 111548355 111548557 -70866685 - LTR1B LTR ERV1 -599 227 26 249 291 47 23 chr6 111549244 111549330 -70865912 - L3 LINE CR1 -194 1383 1296 30 27 0 0 chr6 111550292 111550329 -70864913 + AT_rich Low_complexity Low_complexity 1 37 0 219 368 187 0 chr6 111550543 111550752 -70864490 - L3 LINE CR1 -15 1562 1315 351 0 0 0 chr6 111551803 111551842 -70863400 + (TA)n Simple_repeat Simple_repeat 1 39 0 1149 238 83 54 chr6 111552434 111552879 -70862363 + MLT1C LTR MaLR 10 467 0 25 95 0 0 chr6 111553554 111553628 -70861614 + AT_rich Low_complexity Low_complexity 1 74 0 26 0 0 0 chr6 111553807 111553833 -70861409 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 111553922 111553943 -70861299 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 111554023 111554047 -70861195 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr6 111554149 111554180 -70861062 + AT_rich Low_complexity Low_complexity 1 31 0 283 340 136 25 chr6 111554461 111554623 -70860619 - LTR33A LTR ERVL -331 192 13 21 57 0 0 chr6 111554843 111554878 -70860364 + AT_rich Low_complexity Low_complexity 1 35 0 33 66 0 0 chr6 111555523 111555584 -70859658 + AT_rich Low_complexity Low_complexity 1 61 0 31 26 0 0 chr6 111556454 111556492 -70858750 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr6 111557197 111557221 -70858021 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 111557700 111557721 -70857521 + AT_rich Low_complexity Low_complexity 1 21 0 1746 166 31 0 chr6 111558751 111559040 -70856202 - AluSx SINE Alu -14 298 1 327 347 25 25 chr6 111559070 111559191 -70856051 - MIR SINE MIR -111 151 31 347 338 150 10 chr6 111560054 111560261 -70854981 + MIR SINE MIR 12 247 -15 443 317 39 29 chr6 111560754 111560959 -70854283 - L2 LINE L2 -518 2796 2590 899 308 31 0 chr6 111561208 111561468 -70853774 + LTR16A LTR ERVL 139 406 -44 442 393 71 38 chr6 111561491 111561913 -70853329 + L2 LINE L2 2836 3271 -1 207 100 0 0 chr6 111562044 111562074 -70853168 + (TAA)n Simple_repeat Simple_repeat 1 30 0 286 272 81 44 chr6 111562120 111562256 -70852986 - MIR SINE MIR -30 232 92 30 0 0 0 chr6 111562352 111562382 -70852860 + AT_rich Low_complexity Low_complexity 1 30 0 1107 51 0 0 chr6 111562382 111562520 -70852722 - L1PA4 LINE L1 -3 6152 6015 182 118 29 0 chr6 111563018 111563052 -70852190 + GA-rich Low_complexity Low_complexity 1 35 0 2708 16 0 10 chr6 111563816 111564125 -70851117 + AluYb8 SINE Alu 1 306 -12 24 0 0 0 chr6 111565311 111565335 -70849907 + AT_rich Low_complexity Low_complexity 1 24 0 269 146 0 0 chr6 111565619 111565660 -70849582 + MLT2C2 LTR ERVL 424 464 0 597 299 73 73 chr6 111565677 111566377 -70848865 - L1M4 LINE L1 -3316 2830 2131 244 172 39 47 chr6 111566734 111566862 -70848380 + (TA)n Simple_repeat Simple_repeat 1 127 0 * 255 87 11 109 chr6 111566771 111566863 -70848379 + (TTATA)n Simple_repeat Simple_repeat 4 86 0 2832 262 248 31 chr6 111567064 111568964 -70846278 + L1M3e LINE L1 6 2276 -4830 2166 106 0 0 chr6 111568964 111569273 -70845969 + AluSc SINE Alu 2 310 0 2832 262 248 31 chr6 111569273 111569917 -70845325 + L1M3e LINE L1 2276 2779 -4327 8314 203 16 12 chr6 111569987 111572834 -70842408 + L1PA16 LINE L1 3308 6161 -5 2678 249 51 7 chr6 111572866 111573776 -70841466 + L1M3e LINE L1 2840 3785 -3321 1092 206 36 4 chr6 111573763 111574015 -70841227 + L1M3e LINE L1 4798 5057 -2049 * 575 166 79 7 chr6 111574002 111574141 -70841101 + L1MA8 LINE L1 6140 6288 -3 * 37 23 0 0 chr6 111574432 111574476 -70840766 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr6 111574609 111574638 -70840604 + AT_rich Low_complexity Low_complexity 1 29 0 35 78 0 0 chr6 111574923 111575000 -70840242 + AT_rich Low_complexity Low_complexity 1 77 0 251 360 26 0 chr6 111575567 111575681 -70839561 - L2 LINE L2 -5 3308 3192 1736 190 3 7 chr6 111575848 111576153 -70839089 + AluSq SINE Alu 1 304 -9 362 267 33 50 chr6 111577785 111577965 -70837277 + L1MCc LINE L1 26 202 -6221 2335 151 5 0 chr6 111578502 111578873 -70836369 - THE1C LTR MaLR 0 375 3 8810 128 57 46 chr6 111578875 111580437 -70834805 - THE1C-int LTR MaLR 0 1580 2 2126 138 72 0 chr6 111580439 111580788 -70834454 - THE1C LTR MaLR -1 374 1 296 234 94 142 chr6 111581210 111581625 -70833617 + L1MCc LINE L1 1008 1402 -5021 509 249 18 41 chr6 111581626 111581795 -70833447 + L1ME2 LINE L1 17 181 -6245 460 243 109 23 chr6 111581856 111582234 -70833008 + L1ME2 LINE L1 5060 5551 -875 180 216 0 0 chr6 111582252 111582303 -70832939 + (TA)n Simple_repeat Simple_repeat 1 51 0 2122 249 112 20 chr6 111582304 111582372 -70832870 + L1ME2 LINE L1 5536 5596 -848 2100 126 0 3 chr6 111582372 111582673 -70832569 + AluSp SINE Alu 1 300 -13 2122 249 112 20 chr6 111582673 111583418 -70831824 + L1ME2 LINE L1 5596 6425 -19 319 252 94 31 chr6 111584803 111584930 -70830312 - MER46C DNA MER2_type -1 337 203 1231 142 142 58 chr6 111584951 111585238 -70830004 - AluSx SINE Alu 0 312 13 22 0 0 0 chr6 111585804 111585826 -70829416 + AT_rich Low_complexity Low_complexity 1 22 0 1621 166 48 27 chr6 111586060 111586435 -70828807 + Tigger3(Golem) DNA MER2_type 2 3029 0 187 103 51 0 chr6 111587056 111587095 -70828147 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr6 111587278 111587301 -70827941 + AT_rich Low_complexity Low_complexity 1 23 0 2382 135 89 0 chr6 111587377 111587769 -70827473 - MER57B LTR ERV1 -7 427 1 23 0 0 0 chr6 111588227 111588250 -70826992 + AT_rich Low_complexity Low_complexity 1 23 0 382 294 20 0 chr6 111588798 111588900 -70826342 + MER45A DNA AcHobo 75 178 0 186 43 0 0 chr6 111589853 111589876 -70825366 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 702 228 22 35 chr6 111590143 111590320 -70824922 - MER5A DNA MER1_type -12 166 3 486 235 11 28 chr6 111591284 111591443 -70823799 - L1ME1 LINE L1 -169 5993 5830 2062 122 56 19 chr6 111592522 111592882 -70822360 - THE1C LTR MaLR 0 375 3 29 28 0 0 chr6 111593556 111593592 -70821650 + AT_rich Low_complexity Low_complexity 1 36 0 330 289 9 44 chr6 111593745 111593859 -70821383 + L2 LINE L2 3200 3309 -4 205 328 172 15 chr6 111593905 111594109 -70821133 - L2 LINE L2 -1054 2260 2025 261 86 52 0 chr6 111594109 111594167 -70821075 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 680 181 16 0 chr6 111594981 111595108 -70820134 - FLAM_C SINE Alu -12 131 3 210 275 0 0 chr6 111596530 111596621 -70818621 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 2846 71 0 0 chr6 111596965 111597332 -70817910 - L1PA5 LINE L1 -3 6151 5785 612 125 10 0 chr6 111597474 111597570 -70817672 - AluSg/x SINE Alu -5 304 208 26 88 0 0 chr6 111597603 111597671 -70817571 + AT_rich Low_complexity Low_complexity 1 68 0 2600 177 17 6 chr6 111597684 111598164 -70817078 + MER66B LTR ERV1 2 486 0 2222 186 25 29 chr6 111598311 111598827 -70816415 + L1MA7 LINE L1 5778 6291 0 303 272 88 15 chr6 111598878 111599014 -70816228 - L1ME3A LINE L1 -12 6158 6013 207 0 0 0 chr6 111599113 111599136 -70816106 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 954 43 0 0 chr6 111599138 111599254 -70815988 - AluY SINE Alu -21 290 175 899 93 0 0 chr6 111599268 111599386 -70815856 - AluY SINE Alu -19 292 175 32 43 0 0 chr6 111599446 111599492 -70815750 + AT_rich Low_complexity Low_complexity 1 46 0 1387 313 18 17 chr6 111599502 111600099 -70815143 - L1ME3A LINE L1 -294 5876 5279 2106 137 0 0 chr6 111600152 111600459 -70814783 - AluSg SINE Alu -1 309 3 2063 157 0 0 chr6 111600576 111600987 -70814255 - AluSx SINE Alu 0 411 1 856 306 66 6 chr6 111601032 111601515 -70813727 + L1ME3A LINE L1 5652 6163 -7 385 289 43 67 chr6 111601763 111601971 -70813271 - L1MEc LINE L1 -6172 224 22 200 297 47 0 chr6 111603945 111604009 -70811233 + MER5B DNA MER1_type 112 178 0 705 266 71 6 chr6 111604103 111604442 -70810800 - Charlie5 DNA MER1_type 0 2624 2264 421 237 15 30 chr6 111604522 111604657 -70810585 - MER3 DNA MER1_type -87 122 37 214 360 80 0 chr6 111604720 111604845 -70810397 - MIR SINE MIR -108 154 20 26 0 0 0 chr6 111606311 111606337 -70808905 + AT_rich Low_complexity Low_complexity 1 26 0 228 314 0 47 chr6 111606538 111606624 -70808618 + MIR SINE MIR 48 129 -133 22 70 0 0 chr6 111606864 111606907 -70808335 + AT_rich Low_complexity Low_complexity 1 43 0 194 0 0 37 chr6 111607923 111607950 -70807292 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 519 179 0 43 chr6 111607976 111608093 -70807149 - LTR24B LTR ERV1 -115 461 350 23 68 0 0 chr6 111608308 111608352 -70806890 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr6 111608405 111608429 -70806813 + AT_rich Low_complexity Low_complexity 1 24 0 283 353 118 34 chr6 111610341 111610968 -70804274 + HAL1 LINE L1 12 691 -1816 1239 291 60 54 chr6 111611520 111612495 -70802747 + HAL1 LINE L1 1051 2030 -477 24 32 0 0 chr6 111612790 111612821 -70802421 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 111613568 111613598 -70801644 + AT_rich Low_complexity Low_complexity 1 30 0 1094 208 8 0 chr6 111613605 111613846 -70801396 - L1MA4 LINE L1 -20 6280 6038 312 306 54 33 chr6 111614426 111614668 -70800574 + L1MEc LINE L1 1844 2090 -4306 2684 248 28 11 chr6 111614686 111615605 -70799637 + L1MEc LINE L1 2469 3403 -2812 3296 192 35 3 chr6 111615608 111616270 -70798972 + L1MEc LINE L1 3810 4492 -1723 4025 191 38 48 chr6 111616279 111617701 -70797541 - L1MA4A LINE L1 0 6303 4895 15182 45 3 0 chr6 111617701 111620343 -70794899 + L1PA4 LINE L1 3510 6155 0 1040 236 14 11 chr6 111620356 111620824 -70794418 + L1MEc LINE L1 4694 5362 -853 243 289 84 36 chr6 111722142 111722225 -70693017 + MIR SINE MIR 59 145 -63 2302 99 0 0 chr6 111723251 111723554 -70691688 - AluSg SINE Alu -7 303 1 249 367 10 0 chr6 111723645 111723743 -70691499 - MIR3 SINE MIR -10 198 100 1155 215 54 18 chr6 111724338 111724685 -70690557 + MSTD LTR MaLR 3 394 -2 24 0 0 0 chr6 111725414 111725438 -70689804 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 111725779 111725814 -70689428 + AT_rich Low_complexity Low_complexity 1 35 0 369 333 29 17 chr6 111725849 111726023 -70689219 + MIR SINE MIR 28 203 -59 592 179 8 45 chr6 111726988 111727122 -70688120 + L1PB4 LINE L1 6027 6155 -1 25 0 0 0 chr6 111727356 111727381 -70687861 + AT_rich Low_complexity Low_complexity 1 25 0 499 281 121 17 chr6 111727591 111727997 -70687245 - L1M4 LINE L1 -3017 3129 2682 236 226 0 32 chr6 111728177 111728239 -70687003 + GA-rich Low_complexity Low_complexity 3 62 0 2653 232 74 32 chr6 111729171 111730411 -70684831 - L1ME1 LINE L1 -5 6144 4856 26 30 0 0 chr6 111731080 111731113 -70684129 + AT_rich Low_complexity Low_complexity 1 33 0 1918 66 8 0 chr6 111732747 111733003 -70682239 - L1PA13 LINE L1 -1 6162 5905 1099 145 0 0 chr6 111733004 111733183 -70682059 + L1P LINE L1 4795 4973 -1173 384 88 0 0 chr6 111733430 111733487 -70681755 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 205 171 0 0 chr6 111733560 111733595 -70681647 + (TG)n Simple_repeat Simple_repeat 2 36 0 1448 161 53 25 chr6 111734147 111734432 -70680810 - MER7A DNA MER2_type 0 346 56 10583 45 0 0 chr6 111734444 111735745 -70679497 - L1P LINE L1 -1608 4538 3238 7399 29 3 0 chr6 111735745 111737396 -70677846 + L1PA5 LINE L1 4504 6139 -15 246 32 0 0 chr6 111737396 111737427 -70677815 + (TA)n Simple_repeat Simple_repeat 2 32 0 1035 273 84 31 chr6 111739068 111739614 -70675628 - HAL1 LINE L1 -20 2487 1913 21 36 0 0 chr6 111739887 111739915 -70675327 + AT_rich Low_complexity Low_complexity 1 28 0 277 252 8 69 chr6 111740603 111740734 -70674508 - L1ME1 LINE L1 -2228 3901 3779 189 246 0 0 chr6 111740736 111740801 -70674441 + (TA)n Simple_repeat Simple_repeat 1 65 0 411 339 57 40 chr6 111741006 111741304 -70673938 - L1ME1 LINE L1 -5197 922 620 612 304 68 14 chr6 111742233 111742453 -70672789 + MIR SINE MIR 13 244 -18 341 258 45 96 chr6 111743076 111743274 -70671968 - MIR SINE MIR -54 208 21 489 311 44 11 chr6 111743603 111743783 -70671459 + MIR3 SINE MIR 23 208 0 1698 186 54 105 chr6 111744196 111744712 -70670530 + MLT1D LTR MaLR 16 505 0 193 292 0 0 chr6 111744980 111745028 -70670214 + L3b LINE CR1 1534 1581 -2 403 339 8 8 chr6 111745645 111745775 -70669467 - L2 LINE L2 -466 2848 2719 181 281 266 31 chr6 111746097 111746198 -70669044 - L2 LINE L2 -946 2368 2238 325 300 67 65 chr6 111746198 111746433 -70668809 + MIR SINE MIR 2 248 -14 234 360 135 23 chr6 111746998 111747473 -70667769 - L2 LINE L2 -1451 1863 1336 254 339 105 8 chr6 111749673 111749797 -70665445 + L2 LINE L2 2616 2751 -563 393 344 74 52 chr6 111749829 111750236 -70665006 + L2 LINE L2 2856 3271 -1 23 0 0 0 chr6 111750294 111750317 -70664925 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 111750471 111750492 -70664750 + AT_rich Low_complexity Low_complexity 1 21 0 1846 157 7 7 chr6 111750790 111751096 -70664146 + AluSx SINE Alu 1 306 -6 444 19 0 0 chr6 111753119 111753172 -70662070 + (CTG)n Simple_repeat Simple_repeat 1 53 0 477 256 36 29 chr6 111753730 111753867 -70661375 - L2 LINE L2 -1 3271 3134 321 364 23 0 chr6 111754122 111754254 -70660988 + L1MC4a LINE L1 5776 5910 -1898 285 182 0 0 chr6 111754305 111754360 -70660882 + (TA)n Simple_repeat Simple_repeat 2 56 0 793 222 148 8 chr6 111755168 111755525 -70659717 + MLT1D LTR MaLR 1 471 -34 375 235 110 44 chr6 111755558 111755694 -70659548 - MIR3 SINE MIR -31 177 33 238 276 114 9 chr6 111757554 111757659 -70657583 - MLT1J LTR MaLR -87 424 309 325 337 39 6 chr6 111757745 111757923 -70657319 - MLT1J LTR MaLR -327 184 1 23 54 0 0 chr6 111757932 111757969 -70657273 + AT_rich Low_complexity Low_complexity 1 37 0 241 171 14 14 chr6 111758049 111758119 -70657123 + (TA)n Simple_repeat Simple_repeat 2 71 0 22 35 0 0 chr6 111758642 111758671 -70656571 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 111758698 111758719 -70656523 + AT_rich Low_complexity Low_complexity 1 21 0 2512 61 0 6 chr6 111759026 111759338 -70655904 - AluY SINE Alu -1 310 1 2194 75 3 19 chr6 111760064 111760372 -70654870 - AluY SINE Alu -8 303 1 383 78 0 0 chr6 111760372 111760423 -70654819 - AluY SINE Alu -167 134 84 181 167 0 0 chr6 111761290 111761320 -70653922 + MIR SINE MIR 118 147 -61 217 265 44 0 chr6 111764219 111764287 -70650955 - L2 LINE L2 -3 3310 3240 648 291 100 28 chr6 111764295 111764584 -70650658 + L2 LINE L2 1943 2252 -1062 351 0 0 0 chr6 111764955 111764994 -70650248 + (TG)n Simple_repeat Simple_repeat 2 40 0 729 276 151 82 chr6 111765012 111765687 -70649555 + L2 LINE L2 2243 2964 -350 546 224 73 97 chr6 111765843 111766102 -70649140 - L1ME1 LINE L1 -4 6162 5910 27 49 0 0 chr6 111767045 111767086 -70648156 + AT_rich Low_complexity Low_complexity 1 41 0 1745 200 84 28 chr6 111768672 111768767 -70646475 + MLT1C LTR MaLR 3 91 -283 3069 164 18 20 chr6 111768767 111769377 -70645865 + L1MA9 LINE L1 5704 6312 0 1745 200 84 28 chr6 111769377 111769684 -70645558 + MLT1C LTR MaLR 91 338 -36 37 39 0 0 chr6 111770090 111770141 -70645101 + AT_rich Low_complexity Low_complexity 1 51 0 571 248 146 19 chr6 111770176 111770499 -70644743 + L1M4 LINE L1 4455 4818 -1328 206 62 31 0 chr6 111770873 111770905 -70644337 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 194 0 39 0 chr6 111770955 111770981 -70644261 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 183 129 0 0 chr6 111771517 111771548 -70643694 + (T)n Simple_repeat Simple_repeat 1 31 0 333 235 143 0 chr6 111771797 111771895 -70643347 - MLT1J LTR MaLR -1 510 399 180 319 121 51 chr6 111773664 111773821 -70641421 - L2 LINE L2 -3 3310 3143 7775 201 35 17 chr6 111773825 111773938 -70641304 + L1PA16 LINE L1 3155 3264 -2902 1871 138 4 7 chr6 111773938 111774213 -70641029 + AluSg SINE Alu 4 277 -33 7775 201 35 17 chr6 111774213 111774915 -70640327 + L1PA16 LINE L1 3264 3951 -2215 1793 148 148 13 chr6 111774915 111775292 -70639950 - MSTA LTR MaLR 0 428 1 7775 201 35 17 chr6 111775292 111777432 -70637810 + L1PA16 LINE L1 3951 6157 -9 773 264 7 102 chr6 111777502 111777915 -70637327 - MLT1A2 LTR MaLR 0 374 1 1349 333 128 29 chr6 111777937 111779096 -70636146 - L2 LINE L2 -194 3078 1801 26 64 0 0 chr6 111779553 111779600 -70635642 + AT_rich Low_complexity Low_complexity 1 47 0 184 369 126 0 chr6 111782637 111782851 -70632391 + L2 LINE L2 2191 2431 -883 311 308 33 11 chr6 111783365 111783456 -70631786 + L2 LINE L2 3199 3291 -22 1277 106 5 0 chr6 111783637 111783825 -70631417 + L1PB1 LINE L1 5963 6151 0 23 33 0 0 chr6 111783904 111783934 -70631308 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr6 111784191 111784220 -70631022 + AT_rich Low_complexity Low_complexity 1 29 0 694 341 92 25 chr6 111784941 111785334 -70629908 - L3b LINE CR1 -54 1529 1111 630 252 148 22 chr6 111786116 111786346 -70628896 + MIR SINE MIR 4 262 0 2014 133 52 33 chr6 111787262 111787630 -70627612 - THE1C LTR MaLR 0 375 1 251 323 88 31 chr6 111787803 111788063 -70627179 + MER102b DNA MER1_type 53 327 -14 8782 89 8 6 chr6 111789761 111791774 -70623468 + L1PA7 LINE L1 4127 6152 -2 22 56 0 0 chr6 111791902 111791938 -70623304 + AT_rich Low_complexity Low_complexity 1 36 0 1432 189 62 11 chr6 111791944 111792059 -70623183 + AluJb SINE Alu 1 109 -203 564 15 0 0 chr6 111792059 111792124 -70623118 + (CA)n Simple_repeat Simple_repeat 2 66 0 1432 189 62 11 chr6 111792124 111792283 -70622959 + AluJb SINE Alu 109 289 -23 1637 113 0 0 chr6 111792751 111792981 -70622261 + AluSg/x SINE Alu 81 310 0 23 0 0 0 chr6 111793111 111793134 -70622108 + AT_rich Low_complexity Low_complexity 1 23 0 899 282 63 7 chr6 111793174 111793475 -70621767 - LTR16B LTR ERVL -136 328 11 23 68 0 0 chr6 111793637 111793681 -70621561 + AT_rich Low_complexity Low_complexity 1 44 0 2567 231 54 26 chr6 111793728 111794569 -70620673 + L1ME2 LINE L1 4545 5406 -760 3502 212 55 0 chr6 111794569 111795315 -70619927 - LTR48 LTR ERV1 0 787 1 2567 231 54 26 chr6 111795315 111795469 -70619773 + L1ME2 LINE L1 5406 5554 -612 * 3745 43 0 0 chr6 111795468 111795928 -70619314 - L1P LINE L1 -2219 3927 3468 7536 33 0 0 chr6 111795928 111797022 -70618220 + L1PA3 LINE L1 5062 6155 0 1843 267 50 7 chr6 111797031 111797616 -70617626 + L1ME2 LINE L1 5546 6155 -9 187 341 89 22 chr6 111797899 111798034 -70617208 - MIR SINE MIR 0 262 119 23 0 0 0 chr6 111798116 111798139 -70617103 + AT_rich Low_complexity Low_complexity 1 23 0 459 246 106 0 chr6 111798206 111798348 -70616894 - MIR SINE MIR -32 230 74 255 380 25 33 chr6 111799405 111799526 -70615716 - L2 LINE L2 -22 3291 3172 1298 284 119 46 chr6 111799910 111800966 -70614276 + L2 LINE L2 2190 3313 0 25 0 0 0 chr6 111802159 111802184 -70613058 + AT_rich Low_complexity Low_complexity 1 25 0 227 196 36 36 chr6 111803176 111803232 -70612010 + MIR SINE MIR 61 116 -146 1212 95 0 18 chr6 111803424 111803444 -70611798 - MER107 DNA MER1_type -32 165 146 491 0 0 17 chr6 111803444 111803504 -70611738 + (TTGTG)n Simple_repeat Simple_repeat 4 62 0 1212 95 0 18 chr6 111803504 111803651 -70611591 - MER107 DNA MER1_type -51 146 1 193 358 0 0 chr6 111803764 111803831 -70611411 - MIR SINE MIR -10 252 186 1233 234 66 77 chr6 111803924 111804364 -70610878 + MLT2B1 LTR ERVL 6 440 -80 279 95 86 0 chr6 111804374 111804479 -70610763 + (TA)n Simple_repeat Simple_repeat 1 114 0 295 130 0 0 chr6 111804496 111804542 -70610700 + MLT2B1 LTR ERVL 419 464 0 867 224 42 123 chr6 111804578 111805002 -70610240 + MLT1B LTR MaLR 1 390 0 226 198 175 16 chr6 111805794 111805920 -70609322 - L1ME4a LINE L1 -40 6081 5936 219 69 0 0 chr6 111805921 111805950 -70609292 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 135 0 0 chr6 111806340 111806377 -70608865 + (GA)n Simple_repeat Simple_repeat 2 38 0 24 53 0 0 chr6 111806656 111806694 -70608548 + AT_rich Low_complexity Low_complexity 1 38 0 9177 34 1 0 chr6 111807522 111808658 -70606584 + L1P LINE L1 2695 3831 -2315 365 272 1 0 chr6 111808760 111808884 -70606358 - L1 LINE L1 -1359 4787 4663 * 2124 181 9 23 chr6 111808881 111809324 -70605918 - L1 LINE L1 -912 5234 4798 30 27 0 0 chr6 111810156 111810193 -70605049 + AT_rich Low_complexity Low_complexity 1 37 0 185 173 58 77 chr6 111812476 111812528 -70602714 - MIR SINE MIR -62 200 150 914 189 6 0 chr6 111812854 111813023 -70602219 + L1P LINE L1 4837 5006 -1140 * 2643 181 46 40 chr6 111813018 111813622 -70601620 + L1MA7 LINE L1 5677 6284 -7 33 0 0 0 chr6 111813626 111813659 -70601583 + AT_rich Low_complexity Low_complexity 1 33 0 191 376 11 11 chr6 111813931 111814024 -70601218 + MER5A DNA MER1_type 2 94 -95 644 143 9 0 chr6 111814232 111814337 -70600905 - MSTA-int LTR MaLR -1545 106 1 1654 182 185 3 chr6 111814337 111814699 -70600543 - MSTA LTR MaLR 0 428 1 1504 151 80 37 chr6 111814699 111815023 -70600219 - L1P LINE L1 -1147 4999 4662 1611 180 7 24 chr6 111815077 111815372 -70599870 - AluJo SINE Alu -18 294 5 342 332 122 24 chr6 111815502 111815748 -70599494 + L1ME4a LINE L1 3975 4240 -1906 349 330 62 10 chr6 111816650 111816859 -70598383 + L1ME4a LINE L1 5255 5474 -2334 1487 232 154 13 chr6 111817081 111817606 -70597636 - MLT1E2 LTR MaLR -15 611 13 296 288 88 29 chr6 111817633 111817873 -70597369 + L1ME4a LINE L1 5707 5960 -161 726 292 153 4 chr6 111818176 111818814 -70596428 + L1ME3 LINE L1 5374 6166 0 1271 82 31 0 chr6 111819318 111819499 -70595743 - L1P LINE L1 -1709 4437 4248 6843 57 14 0 chr6 111819499 111820501 -70594741 + L1PA7 LINE L1 5138 6151 -3 1271 82 31 0 chr6 111820501 111820513 -70594729 - L1P LINE L1 -1898 4248 4238 1050 131 31 31 chr6 111820772 111820994 -70594248 - L1 LINE L1 -769 5377 5156 1074 136 100 0 chr6 111820994 111821213 -70594029 + L1MA8 LINE L1 6047 6288 -3 22 0 0 0 chr6 111821433 111821455 -70593787 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr6 111822568 111822603 -70592639 + AT_rich Low_complexity Low_complexity 1 35 0 10029 29 2 3 chr6 111822959 111824928 -70590314 + L1PA4 LINE L1 4188 6155 0 731 280 28 0 chr6 111824960 111825171 -70590071 - L1M3e LINE L1 -6813 217 1 1200 277 38 7 chr6 111825193 111825615 -70589627 - L1M4 LINE L1 -1817 4329 3895 7567 27 3 0 chr6 111825696 111827166 -70588076 + L1PA3 LINE L1 4678 6155 0 462 299 77 55 chr6 111827995 111828450 -70586792 - L1ME4a LINE L1 -256 5865 5401 25 51 0 0 chr6 111828634 111828673 -70586569 + AT_rich Low_complexity Low_complexity 1 39 0 693 77 0 0 chr6 111828784 111828875 -70586367 + L1P LINE L1 1 91 -6055 249 97 0 0 chr6 111828877 111828908 -70586334 + (A)n Simple_repeat Simple_repeat 1 31 0 1222 122 0 0 chr6 111829014 111829203 -70586039 - L1P LINE L1 -926 5220 5032 * 3699 204 37 11 chr6 111829199 111830113 -70585129 - L1MC1 LINE L1 -387 5946 4973 1586 138 10 43 chr6 111830113 111830418 -70584824 - AluSx SINE Alu -17 295 1 3699 204 37 11 chr6 111830418 111830940 -70584302 - L1MC1 LINE L1 -1360 4973 4466 381 338 38 15 chr6 111831641 111831774 -70583468 - MIR SINE MIR -109 153 18 185 0 40 0 chr6 111831900 111831925 -70583317 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 276 280 128 16 chr6 111832083 111832208 -70583034 + MIR SINE MIR 79 217 -45 2243 101 0 0 chr6 111832394 111832690 -70582552 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr6 111833730 111833751 -70581491 + AT_rich Low_complexity Low_complexity 1 21 0 342 169 28 0 chr6 111834727 111834798 -70580444 - MLT1D LTR MaLR -2 503 431 * 1112 180 11 0 chr6 111834793 111834976 -70580266 - MLT1D LTR MaLR -316 189 5 2268 135 49 0 chr6 111835030 111835377 -70579865 + THE1B LTR MaLR 1 364 0 189 333 12 24 chr6 111835446 111835530 -70579712 - MIR SINE MIR -158 104 22 42 20 0 0 chr6 111836610 111836659 -70578583 + AT_rich Low_complexity Low_complexity 1 49 0 231 114 0 0 chr6 111838045 111838080 -70577162 + (TG)n Simple_repeat Simple_repeat 2 36 0 982 243 44 53 chr6 111838104 111838516 -70576726 - L1MC4 LINE L1 -171 7871 7464 21 0 0 0 chr6 111838516 111838537 -70576705 + AT_rich Low_complexity Low_complexity 1 21 0 559 299 30 35 chr6 111838751 111838952 -70576290 + MLT1J LTR MaLR 1 200 -311 8022 160 31 8 chr6 111838965 111841460 -70573782 - L1MA3 LINE L1 0 6305 3748 1836 145 125 33 chr6 111841460 111841852 -70573390 + MSTA LTR MaLR 1 428 0 1365 145 9 0 chr6 111841854 111842068 -70573174 + MSTA-int LTR MaLR 3 218 -1362 357 289 0 0 chr6 111842990 111843080 -70572162 + L1MC4 LINE L1 6614 6703 -1339 285 113 0 0 chr6 111843090 111843143 -70572099 + LTR66 LTR ERVL 394 446 -164 1021 251 88 11 chr6 111843172 111843535 -70571707 - L1M4 LINE L1 -1121 5985 5595 * 1230 127 5 27 chr6 111843528 111843748 -70571494 + L1MA3 LINE L1 5804 6018 -287 1921 141 28 19 chr6 111843749 111844068 -70571174 + THE1C LTR MaLR 1 322 -53 1036 77 0 0 chr6 111844090 111844220 -70571022 + AluY SINE Alu 164 293 -18 3978 203 31 11 chr6 111844222 111845276 -70569966 - L1MA9 LINE L1 -195 6117 5045 3392 206 50 18 chr6 111845282 111845439 -70569803 - L1M4 LINE L1 -1553 5553 5403 1664 186 3 19 chr6 111845439 111845750 -70569492 - AluJb SINE Alu -4 308 3 3392 206 50 18 chr6 111845750 111846483 -70568759 - L1M4 LINE L1 -1703 5403 4634 2890 69 60 35 chr6 111846499 111846888 -70568354 + MLT2A1 LTR ERVL 1 404 -40 231 88 0 0 chr6 111846888 111846922 -70568320 + (TA)n Simple_repeat Simple_repeat 2 35 0 2890 69 60 35 chr6 111846922 111846965 -70568277 + MLT2A1 LTR ERVL 404 444 0 19169 79 15 2 chr6 111846965 111850790 -70564452 + HERVL-A1 LTR ERVL 1 3870 -1784 11846 76 12 7 chr6 111850787 111852411 -70562831 + HERVL-A1 LTR ERVL 4023 5654 0 * 1774 110 29 4 chr6 111852411 111852692 -70562550 + MLT2A1 LTR ERVL 1 288 -156 459 0 0 0 chr6 111852692 111852743 -70562499 + (TG)n Simple_repeat Simple_repeat 2 52 0 292 25 0 25 chr6 111852746 111852786 -70562456 + MLT2A1 LTR ERVL 413 451 -2 4210 242 78 11 chr6 111852788 111854481 -70560761 - L1M4 LINE L1 -2466 4640 2827 1211 236 35 63 chr6 111854491 111854979 -70560263 - L1M4 LINE L1 -4977 2053 252 866 218 0 0 chr6 111855025 111855195 -70560047 - MSTC LTR MaLR 0 428 259 445 311 51 42 chr6 111856728 111857040 -70558202 - L1MC4a LINE L1 -1854 5954 5640 266 253 13 32 chr6 111857184 111857338 -70557904 - L1MC4a LINE L1 -1819 4327 4177 5561 148 28 17 chr6 111857346 111858979 -70556263 - L1PB2 LINE L1 -4 6147 4501 2381 101 6 3 chr6 111858993 111859341 -70555901 - THE1A LTR MaLR 0 355 7 11165 96 5 1 chr6 111859343 111860912 -70554330 - THE1A-int LTR MaLR -6 1574 1 2617 90 6 8 chr6 111860912 111861268 -70553974 - THE1A LTR MaLR 0 355 1 604 224 25 0 chr6 111861272 111861468 -70553774 - L1PB2 LINE L1 -1665 4481 4281 2150 208 164 8 chr6 111862022 111862613 -70552629 + MER76 LTR ERV 1 683 -5 269 337 61 49 chr6 111862636 111862799 -70552443 + MIR SINE MIR 53 217 -45 23 33 0 0 chr6 111862913 111862943 -70552299 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr6 111863052 111863083 -70552159 + AT_rich Low_complexity Low_complexity 1 31 0 1733 152 0 25 chr6 111863515 111863791 -70551451 - AluSx SINE Alu -18 294 26 734 273 91 88 chr6 111863989 111864330 -70550912 + L2 LINE L2 105 446 -2868 437 230 50 7 chr6 111864401 111864540 -70550702 + L1MC4 LINE L1 7784 7928 -114 3355 43 2 0 chr6 111864704 111865119 -70550123 - L1PA4 LINE L1 -2 6153 5738 1979 130 17 7 chr6 111865647 111865948 -70549294 + AluSx SINE Alu 1 304 -8 194 88 0 29 chr6 111867742 111867776 -70547466 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr6 111868036 111868057 -70547185 + AT_rich Low_complexity Low_complexity 1 21 0 459 277 27 0 chr6 111868587 111868699 -70546543 + L2 LINE L2 3193 3307 -6 185 239 0 22 chr6 111868939 111868985 -70546257 + MIR SINE MIR 73 117 -145 5583 128 72 17 chr6 111869022 111870109 -70545133 - Tigger3b DNA MER2_type -83 1148 2 1382 75 0 0 chr6 111870121 111870295 -70544947 + AluY SINE Alu 131 304 -7 13890 176 33 6 chr6 111870323 111871086 -70544156 + L1M1 LINE L1 19 760 -6805 213 39 0 0 chr6 111871086 111871112 -70544130 + (CATTC)n Simple_repeat Simple_repeat 1 26 0 13890 176 33 6 chr6 111871112 111872963 -70542279 + L1M1 LINE L1 760 2704 -4861 4313 212 18 9 chr6 111873019 111873947 -70541295 + L1M1 LINE L1 113 1049 -6516 * 10088 173 21 14 chr6 111873943 111874019 -70541223 + L1M1 LINE L1 3174 3248 -4317 2266 107 0 0 chr6 111874019 111874317 -70540925 + AluY SINE Alu 1 298 -13 10088 173 21 14 chr6 111874317 111876831 -70538411 + L1M1 LINE L1 3248 5783 -1782 1534 231 96 19 chr6 111877167 111877607 -70537635 + MLT2B2 LTR ERVL 1 481 -34 336 48 0 0 chr6 111877607 111877649 -70537593 + (TG)n Simple_repeat Simple_repeat 2 43 0 1534 231 96 19 chr6 111877649 111877679 -70537563 + MLT2B2 LTR ERVL 481 507 -8 1271 184 103 32 chr6 111877707 111878016 -70537226 + MLT2B1 LTR ERVL 122 547 -7 185 298 105 35 chr6 111879416 111879530 -70535712 - L2 LINE L2 -21 3292 3171 21 82 0 0 chr6 111883520 111883569 -70531673 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chr6 111883656 111883695 -70531547 + AT_rich Low_complexity Low_complexity 1 39 0 556 296 59 16 chr6 111884341 111884762 -70530480 + L1ME3 LINE L1 1371 1718 -4497 307 318 73 7 chr6 111885126 111885415 -70529827 + L1ME3 LINE L1 5153 5460 -755 275 258 0 0 chr6 111885491 111885553 -70529689 + MLT2E LTR ERVL 32 93 -535 461 280 98 0 chr6 111885661 111885854 -70529388 + L1ME3 LINE L1 5703 5914 -317 543 311 82 5 chr6 111886060 111886266 -70528976 - MIR SINE MIR -16 246 25 2109 119 0 11 chr6 111886658 111886943 -70528299 + AluSp SINE Alu 13 294 -19 877 277 171 6 chr6 111887354 111887696 -70527546 + L2 LINE L2 2589 2982 -331 1733 154 10 26 chr6 111887752 111888063 -70527179 - MER1B DNA MER1_type 0 339 34 357 269 149 34 chr6 111888085 111888293 -70526949 + L2 LINE L2 3082 3313 0 2221 86 10 7 chr6 111888579 111888869 -70526373 + AluY SINE Alu 1 291 -20 1718 197 61 8 chr6 111889035 111889411 -70525831 - MSTD LTR MaLR 0 396 1 2066 138 3 0 chr6 111893121 111893417 -70521825 + AluSx SINE Alu 1 297 -15 227 340 60 70 chr6 111893443 111893658 -70521584 + L2 LINE L2 308 520 -2794 887 276 28 6 chr6 111893818 111894137 -70521105 + L1PB3 LINE L1 3 328 -6535 1354 222 88 100 chr6 111894162 111894905 -70520337 + LTR1B LTR ERV1 1 734 -92 260 215 7 167 chr6 111894993 111895137 -70520105 + LTR28 LTR ERV1 900 1020 0 5413 251 27 24 chr6 111895155 111897633 -70517609 + L1PB3 LINE L1 368 1899 -4964 1284 20 0 0 chr6 111898022 111898170 -70517072 - L1PA5 LINE L1 -6 6148 6001 5855 34 6 0 chr6 111898170 111899095 -70516147 + L1PA5 LINE L1 5057 5987 -167 1229 187 21 0 chr6 111899095 111899378 -70515864 + L1PB3 LINE L1 1902 2190 -4673 644 260 0 0 chr6 111899375 111899529 -70515713 - L1 LINE L1 -3558 2588 2435 * 12084 230 30 16 chr6 111899545 111899880 -70515362 + L1PB3 LINE L1 2184 2513 -4349 2281 106 0 0 chr6 111899880 111900183 -70515059 + AluY SINE Alu 1 303 -8 12084 230 30 16 chr6 111900183 111903622 -70511620 + L1PB3 LINE L1 2513 6080 -782 2375 213 56 40 chr6 111903629 111904198 -70511044 + L1PA15 LINE L1 1162 1739 -5048 * 2542 223 42 9 chr6 111904187 111904859 -70510383 + L1PA15 LINE L1 2740 3433 -3364 7239 204 30 5 chr6 111904873 111907300 -70507942 + L1PA15 LINE L1 4331 6800 -16 5118 134 10 1 chr6 111907303 111908094 -70507148 + L1PB3 LINE L1 6064 6861 -9 208 346 65 9 chr6 111908102 111908209 -70507033 + L2 LINE L2 674 786 -2528 746 232 46 10 chr6 111908597 111908791 -70506451 - MER21B LTR ERV1 -54 809 609 2025 142 30 38 chr6 111908795 111909162 -70506080 + THE1B LTR MaLR 1 364 0 11326 100 14 1 chr6 111909162 111910723 -70504519 + THE1B-int LTR MaLR 1 1580 0 1760 139 70 49 chr6 111910723 111911068 -70504174 + THE1B LTR MaLR 1 352 -12 557 205 66 36 chr6 111911074 111911240 -70504002 - MER21B LTR ERV1 -251 612 442 660 162 0 0 chr6 111911240 111911351 -70503891 - L1PA10 LINE L1 -1559 4587 4477 6017 95 32 2 chr6 111911351 111912881 -70502361 + L1PA10 LINE L1 4601 6150 -18 912 268 53 53 chr6 111912886 111913241 -70502001 - MER21B LTR ERV1 -409 454 100 593 277 97 21 chr6 111913487 111913870 -70501372 - L1MEd LINE L1 -4912 1207 796 21 0 0 0 chr6 111914082 111914103 -70501139 + AT_rich Low_complexity Low_complexity 1 21 0 907 230 34 81 chr6 111914257 111914700 -70500542 + MLT1A1 LTR MaLR 5 372 -2 189 0 0 0 chr6 111914906 111914927 -70500315 + (TG)n Simple_repeat Simple_repeat 2 22 0 2276 85 0 0 chr6 111914991 111915284 -70499958 + AluY SINE Alu 1 293 -18 31 68 0 0 chr6 111915401 111915460 -70499782 + AT_rich Low_complexity Low_complexity 1 59 0 710 285 77 75 chr6 111916126 111916922 -70498320 + L1MC4 LINE L1 7097 7893 -149 395 73 176 0 chr6 111917015 111917083 -70498159 + MADE1 DNA Mariner 1 80 0 587 331 105 40 chr6 111917086 111917666 -70497576 - MLT2F LTR ERVL 0 663 46 210 275 126 66 chr6 111918245 111918412 -70496830 + MER5B DNA MER1_type 2 178 0 2604 221 8 0 chr6 111918681 111919175 -70496067 - MLT2B1 LTR ERVL -8 512 15 1267 177 9 102 chr6 111919392 111919714 -70495528 + AluJo SINE Alu 1 292 -20 264 238 0 12 chr6 111919960 111920040 -70495202 + A-rich Low_complexity Low_complexity 1 79 0 2430 227 35 6 chr6 111920258 111920804 -70494438 + MER68 LTR ERV1 1 562 0 569 313 75 23 chr6 111920823 111921106 -70494136 - L1MC4a LINE L1 -1879 5929 5662 339 44 0 0 chr6 111921106 111921151 -70494091 + (CA)n Simple_repeat Simple_repeat 2 46 0 569 313 75 23 chr6 111921151 111921491 -70493751 - L1MC4a LINE L1 -2146 5662 5254 250 327 27 0 chr6 111922240 111922350 -70492892 + CT-rich Low_complexity Low_complexity 4 116 0 289 350 93 11 chr6 111922412 111922595 -70492647 - MIR SINE MIR -62 200 3 280 305 60 43 chr6 111923374 111923532 -70491710 - MIR SINE MIR -81 127 4 25 0 0 0 chr6 111924126 111924151 -70491091 + AT_rich Low_complexity Low_complexity 1 25 0 2123 119 0 20 chr6 111924696 111924999 -70490243 - AluSq SINE Alu -14 299 3 228 35 0 0 chr6 111925955 111925984 -70489258 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5687 131 43 0 chr6 111926029 111927013 -70488229 - L1PA16 LINE L1 -9 6157 5160 2361 58 0 0 chr6 111927592 111927887 -70487355 + L1PA6 LINE L1 5858 6152 -2 351 300 55 0 chr6 111928337 111928447 -70486795 - Charlie8 DNA MER1_type -2264 153 38 2954 251 46 13 chr6 111929553 111930420 -70484822 - L1ME1 LINE L1 -5 6230 5335 189 107 0 0 chr6 111930650 111930678 -70484564 + (TA)n Simple_repeat Simple_repeat 2 29 0 940 314 47 42 chr6 111930747 111931542 -70483700 - L1ME1 LINE L1 -4543 1853 1055 424 291 162 9 chr6 111932026 111932236 -70483006 - MIR SINE MIR -8 254 13 1613 256 20 9 chr6 111932299 111932744 -70482498 - L1MD3 LINE L1 -39 7956 7507 281 330 136 26 chr6 111932745 111932936 -70482306 - L1MC/D LINE L1 -1984 5824 5613 201 238 0 0 chr6 111933189 111933231 -70482011 + L2 LINE L2 3231 3272 0 1270 187 26 26 chr6 111934002 111934298 -70480944 + AluJo SINE Alu 42 312 0 24 32 0 0 chr6 111934349 111934380 -70480862 + AT_rich Low_complexity Low_complexity 1 31 0 362 21 21 0 chr6 111934495 111934542 -70480700 + (TTA)n Simple_repeat Simple_repeat 2 49 0 186 328 125 62 chr6 111936344 111936472 -70478770 - L2 LINE L2 -21 3251 3116 2692 99 3 0 chr6 111936982 111937345 -70477897 + THE1B LTR MaLR 1 364 0 1597 218 6 16 chr6 111938439 111938751 -70476491 + AluJb SINE Alu 1 309 -3 2153 192 76 27 chr6 111939179 111939668 -70475574 + MLT2B1 LTR ERVL 7 519 -1 370 304 112 0 chr6 111940194 111940319 -70474923 - L2 LINE L2 -1 3271 3133 815 174 78 73 chr6 111940519 111940642 -70474600 - MER20 DNA MER1_type 0 219 93 438 79 0 0 chr6 111940642 111940705 -70474537 + (CA)n Simple_repeat Simple_repeat 2 64 0 815 174 78 73 chr6 111940705 111940799 -70474443 - MER20 DNA MER1_type -126 93 1 238 216 0 0 chr6 111941119 111941170 -70474072 + A-rich Low_complexity Low_complexity 1 51 0 216 97 0 0 chr6 111941200 111941231 -70474011 + L2 LINE L2 3281 3311 -2 339 316 26 0 chr6 111941407 111941524 -70473718 + MARNA DNA Mariner 437 556 -30 32 26 0 0 chr6 111942612 111942651 -70472591 + AT_rich Low_complexity Low_complexity 1 39 0 2199 103 0 0 chr6 111942993 111943313 -70471929 + AluSc SINE Alu 1 320 0 2524 264 83 26 chr6 111945283 111946215 -70469027 + L2 LINE L2 1560 2544 -770 431 265 136 41 chr6 111946215 111946509 -70468733 + L1M4 LINE L1 3163 3484 -2662 1207 256 126 86 chr6 111946573 111947529 -70467713 + L1M4 LINE L1 4105 5112 -1034 1186 182 81 71 chr6 111947529 111947688 -70467554 - AluJo SINE Alu -3 299 134 2303 86 0 20 chr6 111947688 111947992 -70467250 - AluY SINE Alu -13 298 1 1186 182 81 71 chr6 111947992 111948128 -70467114 - AluJo SINE Alu -168 134 1 1207 256 126 86 chr6 111948128 111948276 -70466966 + L1M4 LINE L1 5112 5253 -893 1492 248 137 17 chr6 111948277 111948760 -70466482 - MLT1E2 LTR MaLR -2 624 84 598 201 35 56 chr6 111948821 111948965 -70466277 - MLT1D LTR MaLR -383 122 1 195 219 92 109 chr6 111949028 111949147 -70466095 + L2 LINE L2 3109 3225 -88 2514 227 33 4 chr6 111949418 111949960 -70465282 + MER68 LTR ERV1 5 562 0 1967 157 0 0 chr6 111950266 111950571 -70464671 + AluY SINE Alu 1 305 -6 281 316 86 63 chr6 111950626 111950799 -70464443 - MER102a DNA MER1_type -1104 313 130 882 179 25 0 chr6 111950799 111950961 -70464281 + L1PA16 LINE L1 5992 6157 -9 281 316 86 63 chr6 111950961 111951056 -70464186 - MER102a DNA MER1_type -1287 130 39 19418 161 20 8 chr6 111951063 111955752 -70459490 + L1PA5 LINE L1 1408 6152 -2 5072 122 21 63 chr6 111955752 111957471 -70457771 + L1PA15 LINE L1 4480 6162 -3 224 176 15 0 chr6 111958566 111958634 -70456608 + (TA)n Simple_repeat Simple_repeat 1 69 0 1820 199 25 15 chr6 111959031 111959423 -70455819 + MSTD LTR MaLR 1 396 0 6109 231 100 27 chr6 111959425 111961036 -70454206 + MSTD-int LTR MaLR 2 1729 -6 1541 160 178 6 chr6 111961043 111961381 -70453861 + MSTD LTR MaLR 1 396 0 194 0 39 0 chr6 111962030 111962056 -70453186 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 22 0 0 0 chr6 111962311 111962333 -70452909 + AT_rich Low_complexity Low_complexity 1 22 0 1952 142 81 9 chr6 111962822 111963168 -70452074 - THE1C LTR MaLR 0 375 5 961 188 40 1 chr6 111964782 111964978 -70450264 - L1M2 LINE L1 -435 5733 5521 479 31 47 0 chr6 111964982 111965046 -70450196 + L1MB1 LINE L1 6101 6167 -1 591 236 155 0 chr6 111967883 111968044 -70447198 + MER5A DNA MER1_type 4 189 0 462 108 0 0 chr6 111969243 111969326 -70445916 + (CATA)n Simple_repeat Simple_repeat 2 84 0 282 284 56 43 chr6 111969683 111969845 -70445397 - MARNA DNA Mariner -249 337 174 234 348 0 0 chr6 111970028 111970097 -70445145 + L2 LINE L2 3203 3271 -1 276 30 0 0 chr6 111971161 111971194 -70444048 + (TA)n Simple_repeat Simple_repeat 2 34 0 304 308 158 27 chr6 111972199 111972345 -70442897 + L2 LINE L2 2526 2690 -624 382 226 22 29 chr6 111972387 111972524 -70442718 - Charlie2a DNA MER1_type -184 2678 2543 1036 137 73 116 chr6 111972584 111972913 -70442329 + MER33 DNA MER1_type 10 324 0 1512 246 130 27 chr6 111972915 111973831 -70441411 - Charlie2a DNA MER1_type -381 2481 1472 227 380 0 0 chr6 111973957 111974049 -70441193 - Charlie2a DNA MER1_type -2182 600 509 * 565 279 83 25 chr6 111974046 111974286 -70440956 - Charlie2a DNA MER1_type -2465 317 64 854 303 102 16 chr6 111974346 111974965 -70440277 + L2 LINE L2 2628 3308 -5 22 0 0 0 chr6 111976495 111976517 -70438725 + AT_rich Low_complexity Low_complexity 1 22 0 24 19 8 0 chr6 111976563 111976637 -70438605 + AT_rich Low_complexity Low_complexity 1 31 0 813 21 0 0 chr6 111978567 111978664 -70436578 - L1PA4 LINE L1 -2 6153 6057 2039 261 71 43 chr6 111979837 111981153 -70434089 - L1ME LINE L1 -3163 2917 1614 491 163 178 8 chr6 111981183 111981312 -70433930 + L1MB1 LINE L1 6017 6167 -1 1725 278 64 26 chr6 111981340 111982431 -70432811 - L1ME LINE L1 -4529 1551 425 5540 132 25 23 chr6 111982432 111983371 -70431871 - Tigger1 DNA MER2_type 0 2418 1475 2208 87 40 0 chr6 111983371 111983670 -70431572 - AluY SINE Alu 0 311 1 5540 132 25 23 chr6 111983670 111983686 -70431556 - Tigger1 DNA MER2_type -943 1475 1461 1288 102 16 0 chr6 111984001 111984187 -70431055 - AluSp SINE Alu 0 313 125 6035 89 33 9 chr6 111984384 111986078 -70429164 + L1PA11 LINE L1 4453 6174 0 8704 132 39 21 chr6 111986257 111987709 -70427533 - Tigger1 DNA MER2_type -939 1479 1 341 295 36 9 chr6 111987747 111987859 -70427383 - L1ME LINE L1 -5701 369 255 341 261 38 76 chr6 111987937 111988148 -70427094 - L1ME LINE L1 -5862 208 6 1169 305 126 9 chr6 111988171 111988730 -70426512 + L2 LINE L2 2465 3074 -239 272 286 245 14 chr6 111988709 111988856 -70426386 - MIR SINE MIR -24 238 58 * 2380 79 0 7 chr6 111989021 111989324 -70425918 - AluY SINE Alu -10 301 1 929 85 8 8 chr6 111989696 111989826 -70425416 + AluY SINE Alu 118 247 -64 1369 219 29 46 chr6 111990408 111990755 -70424487 - MER58B DNA MER1_type 0 341 1 2096 169 35 5 chr6 111991177 111991604 -70423638 + L1MA4 LINE L1 5855 6294 -6 2218 128 58 0 chr6 111991629 111992026 -70423216 + L1MA5A LINE L1 5878 6297 0 310 269 118 0 chr6 111993065 111993184 -70422058 - MIR SINE MIR 0 262 130 322 338 74 14 chr6 111993185 111993333 -70421909 - MIR3 SINE MIR -14 194 38 321 228 33 33 chr6 111993447 111993539 -70421703 - L2 LINE L2 -10 3303 3212 430 328 107 52 chr6 111994137 111994539 -70420703 - L2 LINE L2 -86 3227 2804 24 0 0 0 chr6 111996415 111996439 -70418803 + AT_rich Low_complexity Low_complexity 1 24 0 349 96 0 0 chr6 111997940 111997992 -70417250 + AluY SINE Alu 247 298 -3 840 209 27 73 chr6 111999374 111999594 -70415648 + MIR SINE MIR 32 241 -21 1736 133 139 0 chr6 111999781 112000097 -70415145 - MER46B DNA MER2_type 0 236 2 1808 194 91 8 chr6 112000098 112000495 -70414747 - MLT1C LTR MaLR -32 435 6 750 294 108 19 chr6 112001488 112001849 -70413393 - L3 LINE CR1 -163 1414 1022 1617 159 197 18 chr6 112002151 112002547 -70412695 + MLT1C LTR MaLR 1 467 0 919 235 140 52 chr6 112002610 112002764 -70412478 - MLT1H LTR MaLR -3 546 407 2801 10 0 10 chr6 112002764 112003077 -70412165 - AluYb8 SINE Alu -8 310 1 919 235 140 52 chr6 112003077 112003385 -70411857 - MLT1H LTR MaLR -142 407 43 294 27 0 0 chr6 112003657 112003694 -70411548 - L1P2 LINE L1 -356 5798 5762 511 16 0 0 chr6 112003694 112003755 -70411487 + L1PA6 LINE L1 6092 6154 0 801 222 64 15 chr6 112003830 112004033 -70411209 + MER20 DNA MER1_type 7 219 0 221 298 107 0 chr6 112004192 112004276 -70410966 - L2 LINE L2 -46 3226 3134 2287 147 48 5 chr6 112004290 112004684 -70410558 - LTR57 LTR ERVL 0 411 1 222 343 80 44 chr6 112004699 112004836 -70410406 + L2 LINE L2 3076 3217 -55 1805 164 4 4 chr6 112005558 112005838 -70409404 + AluSx SINE Alu 3 282 -30 536 292 128 56 chr6 112006242 112006656 -70408586 + MLT1J2 LTR MaLR 7 450 0 373 331 39 0 chr6 112006749 112006876 -70408366 - L2 LINE L2 0 3313 3182 219 342 18 18 chr6 112007037 112007151 -70408091 - L2 LINE L2 -3168 146 33 35 24 0 0 chr6 112008450 112008492 -70406750 + AT_rich Low_complexity Low_complexity 1 42 0 232 250 206 0 chr6 112008509 112008601 -70406641 - MIR SINE MIR -64 144 34 387 321 176 10 chr6 112008741 112008934 -70406308 - MIR SINE MIR -25 237 13 740 303 110 28 chr6 112009107 112009533 -70405709 - L2 LINE L2 -1 3312 2852 591 302 62 42 chr6 112009566 112009874 -70405368 - L2 LINE L2 -546 2768 2455 648 218 6 19 chr6 112010277 112010433 -70404809 - MARNA DNA Mariner -50 536 383 410 200 0 80 chr6 112011937 112012037 -70403205 - MER2 DNA MER2_type -250 95 4 239 293 68 15 chr6 112013475 112013608 -70401634 - LTR16B LTR ERVL -27 437 298 279 292 53 9 chr6 112013900 112014013 -70401229 - HERV16 LTR ERVL -4569 427 310 343 287 0 25 chr6 112014165 112014287 -70400955 + LTR16C LTR ERVL 373 491 0 419 209 73 0 chr6 112015007 112015117 -70400125 + LTR16C LTR ERVL 372 489 -2 931 61 76 23 chr6 112015410 112015542 -70399700 - MER85 DNA T2_type 0 139 1 1353 158 68 28 chr6 112015818 112016141 -70399101 + L1MA7 LINE L1 5956 6291 0 2248 86 0 0 chr6 112017664 112017976 -70397266 - AluSc SINE Alu 0 312 1 181 385 0 90 chr6 112018369 112018535 -70396707 + L2 LINE L2 2934 3084 -188 24 32 0 0 chr6 112020544 112020575 -70394667 + AT_rich Low_complexity Low_complexity 1 31 0 5980 142 90 5 chr6 112021125 112022259 -70392983 - Tigger3b DNA MER2_type 0 1231 2 643 221 8 0 chr6 112022373 112022500 -70392742 + MER58B DNA MER1_type 214 341 0 447 298 161 0 chr6 112024070 112024238 -70391004 + MIR SINE MIR 9 203 -59 984 255 64 71 chr6 112024964 112025403 -70389839 - LTR33A LTR ERVL -33 490 55 416 56 0 56 chr6 112025563 112025634 -70389608 + L1PA6 LINE L1 6088 6154 0 184 333 171 29 chr6 112025748 112025853 -70389389 + L2 LINE L2 3152 3271 -1 2173 78 0 0 chr6 112026668 112026936 -70388306 - AluY SINE Alu -4 307 40 789 201 6 41 chr6 112027791 112027960 -70387282 - FRAM SINE Alu -2 164 2 21 0 0 0 chr6 112028282 112028303 -70386939 + AT_rich Low_complexity Low_complexity 1 21 0 2271 99 0 0 chr6 112028326 112028618 -70386624 + AluSc SINE Alu 1 292 -17 2107 130 13 0 chr6 112029008 112029315 -70385927 + AluSx SINE Alu 2 312 0 2002 148 14 0 chr6 112032114 112032458 -70382784 + L1PA13 LINE L1 5815 6163 0 332 272 26 38 chr6 112032602 112032746 -70382496 - MIR SINE MIR -71 137 2 2787 7 0 3 chr6 112033207 112033515 -70381727 + AluYa5 SINE Alu 1 307 -4 345 363 133 4 chr6 112034583 112034823 -70380419 - L3b LINE CR1 -157 1426 1156 22 35 0 0 chr6 112035141 112035170 -70380072 + AT_rich Low_complexity Low_complexity 1 29 0 1722 255 28 30 chr6 112035256 112035961 -70379281 + L2 LINE L2 2473 3182 -131 2244 195 69 109 chr6 112035967 112036602 -70378640 - MLT1E2 LTR MaLR -6 620 9 509 256 8 8 chr6 112036637 112036762 -70378480 + L2 LINE L2 3189 3313 0 356 306 8 8 chr6 112036858 112036992 -70378250 - MER94 DNA DNA 0 134 1 228 35 0 0 chr6 112038703 112038732 -70376510 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 754 188 33 11 chr6 112038740 112038780 -70376462 - L1MB3 LINE L1 -12 6171 6133 656 58 0 0 chr6 112038780 112038866 -70376376 - L1PA8 LINE L1 -6 6166 6081 754 188 33 11 chr6 112038866 112039006 -70376236 - L1MB3 LINE L1 -50 6133 5987 26 0 0 0 chr6 112039012 112039038 -70376204 + AT_rich Low_complexity Low_complexity 1 26 0 931 187 36 71 chr6 112039416 112039641 -70375601 + MER20 DNA MER1_type 3 219 0 2160 110 0 0 chr6 112039991 112040272 -70374970 + AluSc SINE Alu 1 281 -28 231 36 0 0 chr6 112040285 112040313 -70374929 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 297 155 0 0 chr6 112043267 112043325 -70371917 + (CA)n Simple_repeat Simple_repeat 1 58 0 25 83 0 0 chr6 112045177 112045237 -70370005 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr6 112045687 112045710 -70369532 + AT_rich Low_complexity Low_complexity 1 23 0 477 301 69 10 chr6 112045944 112046147 -70369095 + MIR SINE MIR 15 229 -33 245 143 0 32 chr6 112046181 112046244 -70368998 + (TCC)n Simple_repeat Simple_repeat 3 63 0 271 286 29 0 chr6 112046574 112046644 -70368598 + L2 LINE L2 3231 3302 -11 356 232 30 71 chr6 112046744 112046843 -70368399 - L2 LINE L2 -1 3271 3177 255 138 121 0 chr6 112046843 112046901 -70368341 + MIR SINE MIR 184 248 -14 271 194 81 0 chr6 112046927 112046989 -70368253 + MIR SINE MIR 184 250 -12 201 74 0 0 chr6 112047414 112047441 -70367801 + (A)n Simple_repeat Simple_repeat 1 27 0 217 279 44 0 chr6 112047810 112047878 -70367364 - MIR SINE MIR -3 259 189 485 298 60 0 chr6 112048424 112048575 -70366667 + MIR SINE MIR 90 249 -13 375 231 26 26 chr6 112048789 112048906 -70366336 + MIR SINE MIR 146 262 0 301 235 20 20 chr6 112049958 112050056 -70365186 + (CAGAGA)n Simple_repeat Simple_repeat 6 103 0 1184 223 78 113 chr6 112050058 112050466 -70364776 - MLT2B1 LTR ERVL -20 394 1 2232 123 3 0 chr6 112050898 112051206 -70364036 + AluSx SINE Alu 1 309 -3 2901 137 6 12 chr6 112051207 112051726 -70363516 + L1M2 LINE L1 5278 5793 -498 30 0 0 0 chr6 112051746 112051776 -70363466 + AT_rich Low_complexity Low_complexity 1 30 0 288 191 0 16 chr6 112051779 112051842 -70363400 + L1M2 LINE L1 5783 5844 -447 1611 211 67 77 chr6 112051852 112052421 -70362821 - L1MDa LINE L1 -5088 1452 890 1862 174 58 138 chr6 112052421 112053185 -70362057 + LTR8A LTR ERV1 1 720 -7 2547 269 54 20 chr6 112053206 112053975 -70361267 - L1MDa LINE L1 -5758 782 16 1154 276 40 5 chr6 112053977 112054382 -70360860 + L1ME2 LINE L1 4681 5099 -1047 2140 130 14 8 chr6 112054383 112054631 -70360611 - L1P4 LINE L1 -551 5615 5363 9210 98 11 3 chr6 112054631 112055785 -70359457 + HSMAR1 DNA Mariner 1 1167 -120 2419 94 0 0 chr6 112055785 112056084 -70359158 + AluSg SINE Alu 1 299 -11 9210 98 11 3 chr6 112056084 112056206 -70359036 + HSMAR1 DNA Mariner 1167 1287 0 2140 130 14 8 chr6 112056206 112056310 -70358932 - L1P4 LINE L1 -803 5363 5261 2192 147 6 3 chr6 112056310 112056657 -70358585 + L1PA16 LINE L1 5809 6157 -9 2039 251 26 17 chr6 112056689 112057466 -70357776 + L1ME2 LINE L1 5122 5897 -267 180 0 0 0 chr6 112057952 112057972 -70357270 + (A)n Simple_repeat Simple_repeat 1 20 0 347 382 61 12 chr6 112057977 112058223 -70357019 + MLT1L LTR MaLR 358 615 0 343 280 17 17 chr6 112058543 112058661 -70356581 - MLT2E LTR ERVL -475 153 36 22 88 0 0 chr6 112058974 112059031 -70356211 + AT_rich Low_complexity Low_complexity 1 57 0 313 296 7 82 chr6 112059212 112059347 -70355895 + L2 LINE L2 3189 3313 0 231 382 0 0 chr6 112060012 112060122 -70355120 - MER117 DNA MER1_type -27 170 61 558 222 0 0 chr6 112060208 112060375 -70354867 + (TA)n Simple_repeat Simple_repeat 1 167 0 351 341 69 0 chr6 112060614 112060787 -70354455 - L2 LINE L2 -981 2333 2149 454 241 246 11 chr6 112060882 112061069 -70354173 + MLT1K LTR MaLR 353 583 -5 300 55 455 0 chr6 112061258 112061313 -70353929 + MADE1 DNA Mariner 1 80 0 223 211 211 40 chr6 112062991 112063067 -70352175 + L2 LINE L2 3168 3256 -16 435 291 81 7 chr6 112063475 112063623 -70351619 - MIR3 SINE MIR -46 162 4 1642 223 91 106 chr6 112064361 112065304 -70349938 + LTR1B LTR ERV1 1 1016 -4 222 277 15 0 chr6 112065306 112065371 -70349871 + MIR SINE MIR 197 262 0 219 36 0 0 chr6 112069036 112069064 -70346178 + (TC)n Simple_repeat Simple_repeat 1 28 0 619 35 23 0 chr6 112069065 112069151 -70346091 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 2310 153 15 0 chr6 112069348 112069741 -70345501 - MER57A LTR ERV1 -4 399 1 2487 14 61 0 chr6 112070013 112070306 -70344936 + AluYa5 SINE Alu 1 311 0 315 275 58 17 chr6 112072042 112072162 -70343080 + MIR SINE MIR 133 257 -5 604 275 113 18 chr6 112073013 112073242 -70342000 + MIR SINE MIR 2 252 -10 731 284 93 0 chr6 112075410 112075635 -70339607 + MIR SINE MIR 17 262 0 735 146 19 25 chr6 112076916 112076955 -70338287 - L1MB1 LINE L1 -1 6167 6129 2226 98 0 20 chr6 112076955 112077260 -70337982 - AluSq SINE Alu -14 299 1 735 146 19 25 chr6 112077260 112077378 -70337864 - L1MB1 LINE L1 -39 6129 6011 234 0 0 0 chr6 112077396 112077422 -70337820 + (T)n Simple_repeat Simple_repeat 1 26 0 1272 160 103 64 chr6 112077422 112077704 -70337538 + AluJo SINE Alu 1 293 -19 472 258 117 0 chr6 112077805 112077925 -70337317 + MER94 DNA DNA 1 134 0 986 221 77 46 chr6 112078956 112079332 -70335910 + MSTC LTR MaLR 1 428 0 379 236 45 27 chr6 112080733 112080843 -70334399 + MIR SINE MIR 48 159 -103 22 0 0 0 chr6 112080938 112080960 -70334282 + AT_rich Low_complexity Low_complexity 1 22 0 276 329 107 80 chr6 112081390 112082120 -70333122 - L2 LINE L2 -354 2960 2211 213 321 48 0 chr6 112082481 112082565 -70332677 + MIR3 SINE MIR 119 206 -2 394 313 9 0 chr6 112082637 112082749 -70332493 - L2 LINE L2 0 3313 3201 920 232 31 30 chr6 112082775 112083297 -70331945 + L1MA7 LINE L1 3287 3812 -3753 * 43919 41 2 1 chr6 112083294 112089442 -70325800 + L1PA4 LINE L1 1 6152 -3 455 231 0 0 chr6 112089449 112089557 -70325685 + L1MA7 LINE L1 3795 3902 -3663 448 311 98 82 chr6 112089582 112090094 -70325148 + L1M2 LINE L1 10 529 -6320 12608 221 16 16 chr6 112090797 112095892 -70319350 + L1PA16 LINE L1 614 5848 -365 326 186 10 72 chr6 112095938 112096035 -70319207 - L1MC4 LINE L1 -1339 6703 6613 244 76 61 15 chr6 112096039 112096105 -70319137 + (TA)n Simple_repeat Simple_repeat 1 69 0 353 181 0 14 chr6 112096105 112096184 -70319058 - L1M3 LINE L1 -371 5795 5728 285 149 23 11 chr6 112096186 112096273 -70318969 + (TA)n Simple_repeat Simple_repeat 2 89 0 1583 189 15 67 chr6 112096281 112096672 -70318570 + L1PA16 LINE L1 5850 6220 -3 10847 178 24 51 chr6 112096673 112097381 -70317861 + L1MA7 LINE L1 3904 4629 -2936 2347 103 3 0 chr6 112097381 112097691 -70317551 - AluSp SINE Alu -2 311 1 10847 178 24 51 chr6 112097691 112099607 -70315635 + L1MA7 LINE L1 4629 6458 -1107 1634 124 149 6 chr6 112099608 112099923 -70315319 + MER46B DNA MER2_type 1 235 -1 4668 154 36 57 chr6 112099924 112100213 -70315029 + L1MA7 LINE L1 6458 6751 -959 1050 80 40 0 chr6 112100213 112100364 -70314878 + L1MA5A LINE L1 6136 6292 -5 4668 154 36 57 chr6 112100364 112101244 -70313998 + L1MA7 LINE L1 6751 7616 -94 1523 169 20 37 chr6 112101244 112101539 -70313703 + AluJo SINE Alu 1 290 -22 4668 154 36 57 chr6 112101539 112101604 -70313638 + L1MA7 LINE L1 7616 7681 -29 2267 254 134 123 chr6 112101661 112102485 -70312757 - L2 LINE L2 -143 3170 2356 655 224 86 43 chr6 112102485 112102695 -70312547 + MLT1A2 LTR MaLR 145 363 -11 2267 254 134 123 chr6 112102695 112103671 -70311571 - L2 LINE L2 -957 2356 1144 2351 214 16 39 chr6 112103938 112104485 -70310757 + MLT2B3 LTR ERVL 1 484 -31 597 281 90 55 chr6 112105435 112105837 -70309405 + MLT1L LTR MaLR 112 527 -88 22 35 0 0 chr6 112105936 112105965 -70309277 + AT_rich Low_complexity Low_complexity 1 29 0 2258 81 3 14 chr6 112106073 112106368 -70308874 - AluSq SINE Alu -21 292 1 337 372 16 8 chr6 112106380 112106509 -70308733 - MIR3 SINE MIR -54 154 25 196 261 0 0 chr6 112106983 112107029 -70308213 + L2 LINE L2 3267 3312 -1 250 329 13 0 chr6 112107200 112107276 -70307966 + (CA)n Simple_repeat Simple_repeat 2 78 0 1911 60 0 17 chr6 112107278 112107513 -70307729 + AluY SINE Alu 81 311 0 465 274 184 24 chr6 112107711 112107999 -70307243 - HAL1 LINE L1 -2056 451 118 246 373 50 0 chr6 112108143 112108363 -70306879 - L1P LINE L1 -2312 3834 3604 1207 311 63 50 chr6 112108508 112109486 -70305756 - L1M4 LINE L1 -2701 3445 2455 21 36 0 0 chr6 112110436 112110464 -70304778 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr6 112110640 112110675 -70304567 + (CA)n Simple_repeat Simple_repeat 1 35 0 241 259 59 47 chr6 112111510 112111595 -70303647 - MIR SINE MIR -113 149 64 252 279 48 19 chr6 112111699 112111803 -70303439 + MIR SINE MIR 83 189 -73 958 226 48 16 chr6 112111997 112112249 -70302993 - MLT1D LTR MaLR -1 504 245 5504 192 56 22 chr6 112112251 112113017 -70302225 + L1MA9 LINE L1 3940 4678 -1634 1257 231 12 75 chr6 112113017 112113416 -70301826 - MLT1A2 LTR MaLR 0 374 1 5504 192 56 22 chr6 112113416 112114929 -70300313 + L1MA9 LINE L1 4678 6302 -10 1008 197 0 5 chr6 112115255 112115453 -70299789 - MER3 DNA MER1_type -3 206 10 2404 97 0 0 chr6 112116010 112116320 -70298922 + AluSx SINE Alu 1 310 -2 324 310 202 5 chr6 112117297 112117500 -70297742 - MIR SINE MIR -17 245 3 480 270 61 18 chr6 112117523 112117686 -70297556 + MER5A DNA MER1_type 7 176 -13 473 243 54 18 chr6 112117744 112117855 -70297387 + MIR SINE MIR 23 137 -125 398 239 23 100 chr6 112118902 112119032 -70296210 + L2 LINE L2 3190 3309 -4 2276 78 10 19 chr6 112119175 112119482 -70295760 + AluY SINE Alu 1 304 -7 1428 175 156 37 chr6 112119555 112119746 -70295496 - LTR54B LTR ERV1 -11 487 320 2186 121 3 10 chr6 112119746 112120060 -70295182 - AluSx SINE Alu 0 312 1 1428 175 156 37 chr6 112120060 112120303 -70294939 - LTR54B LTR ERV1 -178 320 1 2512 64 0 0 chr6 112120840 112121151 -70294091 + AluY SINE Alu 1 311 0 2647 159 151 2 chr6 112121525 112122140 -70293102 + MER39 LTR ERV1 1 707 0 36 62 0 0 chr6 112123343 112123407 -70291835 + AT_rich Low_complexity Low_complexity 1 64 0 202 257 114 76 chr6 112125482 112125587 -70289655 - MIR SINE MIR -142 120 12 306 0 0 0 chr6 112126461 112126495 -70288747 + (TG)n Simple_repeat Simple_repeat 2 35 0 692 117 0 0 chr6 112127686 112127780 -70287462 - FLAM_C SINE Alu -18 125 32 284 314 192 26 chr6 112127992 112128419 -70286823 - L2 LINE L2 -1069 2245 1748 447 274 81 14 chr6 112128473 112128808 -70286434 - MLT1I LTR MaLR 0 409 1 220 323 123 57 chr6 112128856 112129296 -70285946 - L2 LINE L2 -1668 1646 1178 233 326 62 23 chr6 112130756 112130885 -70284357 - L2 LINE L2 -22 3291 3158 2329 159 5 15 chr6 112130898 112131289 -70283953 + MLT1B LTR MaLR 4 390 0 592 57 65 16 chr6 112131813 112131936 -70283306 + GA-rich Low_complexity Low_complexity 4 132 0 191 243 0 14 chr6 112132730 112132804 -70282438 + GA-rich Low_complexity Low_complexity 1 73 0 1083 124 0 0 chr6 112132815 112132992 -70282250 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 711 179 0 0 chr6 112133001 112133146 -70282096 + GA-rich Low_complexity Low_complexity 4 148 0 490 232 40 26 chr6 112133461 112133612 -70281630 - LTR67 LTR ERVL -8 549 397 232 344 62 0 chr6 112134688 112134784 -70280458 + L2 LINE L2 3117 3218 -54 26 0 0 0 chr6 112135243 112135269 -70279973 + AT_rich Low_complexity Low_complexity 1 26 0 397 193 51 61 chr6 112135281 112135478 -70279764 + L1MC5 LINE L1 7578 7772 -189 440 287 61 2 chr6 112135508 112135672 -70279570 - MIR SINE MIR -63 145 18 487 266 42 46 chr6 112135760 112135997 -70279245 - MLT1J LTR MaLR -249 262 27 560 242 11 45 chr6 112136478 112136656 -70278586 - MER58C DNA MER1_type 0 215 44 288 0 0 0 chr6 112136671 112136703 -70278539 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 180 247 235 12 chr6 112137211 112137292 -70277950 - MER5A DNA MER1_type -42 147 49 1156 199 28 121 chr6 112137686 112138084 -70277158 + MLT1A1 LTR MaLR 5 365 0 2509 59 0 3 chr6 112138587 112138890 -70276352 + AluY SINE Alu 1 302 -9 249 390 37 30 chr6 112138973 112139273 -70275969 - L2 LINE L2 -868 2446 2145 1025 186 45 28 chr6 112139290 112139581 -70275661 + L1ME1 LINE L1 5761 6056 -110 526 229 8 1 chr6 112139611 112139747 -70275495 + L1ME1 LINE L1 6040 6334 0 2486 130 2 15 chr6 112139816 112140097 -70275145 + MER57A LTR ERV1 1 277 -126 2503 106 28 8 chr6 112140097 112140454 -70274788 + THE1B LTR MaLR 1 364 0 2486 130 2 15 chr6 112140454 112140580 -70274662 + MER57A LTR ERV1 277 403 0 2242 117 0 0 chr6 112140634 112140932 -70274310 + AluSx SINE Alu 1 298 -14 337 274 128 8 chr6 112141823 112141940 -70273302 + L2 LINE L2 3182 3312 -1 325 315 13 27 chr6 112143113 112143262 -70271980 - MIR SINE MIR -55 207 61 1107 191 28 55 chr6 112144314 112144639 -70270603 + LTR56 LTR ERV1 20 335 -110 2665 95 38 28 chr6 112144639 112145310 -70269932 - L1PA13 LINE L1 -510 5658 4992 3246 83 34 6 chr6 112145310 112145780 -70269462 + L1PA13 LINE L1 5679 6161 -2 286 254 51 29 chr6 112145798 112145936 -70269306 + LTR56 LTR ERV1 292 445 0 613 222 87 14 chr6 112146210 112146417 -70268825 - L1ME3 LINE L1 0 6162 5941 2240 95 27 0 chr6 112146500 112146794 -70268448 - AluSp SINE Alu -11 302 1 25 31 0 0 chr6 112146845 112146877 -70268365 + AT_rich Low_complexity Low_complexity 1 32 0 227 31 31 0 chr6 112147315 112147347 -70267895 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chr6 112147546 112147569 -70267673 + (GA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chr6 112148098 112148123 -70267119 + AT_rich Low_complexity Low_complexity 1 25 0 1762 142 57 3 chr6 112148641 112148923 -70266319 + AluSx SINE Alu 12 308 -4 255 265 48 12 chr6 112149127 112149210 -70266032 + MIR SINE MIR 105 190 -72 186 43 0 0 chr6 112149766 112149789 -70265453 + (CAT)n Simple_repeat Simple_repeat 3 25 0 580 308 33 38 chr6 112150372 112150612 -70264630 + MIR SINE MIR 6 244 -18 296 234 0 0 chr6 112150799 112150863 -70264379 + MER5A DNA MER1_type 9 72 -117 1938 117 10 30 chr6 112150863 112151162 -70264080 + AluSc SINE Alu 11 303 -6 260 27 27 0 chr6 112151162 112151199 -70264043 + (GA)n Simple_repeat Simple_repeat 1 38 0 192 77 0 0 chr6 112151196 112151222 -70264020 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 * 310 257 193 9 chr6 112151223 112151332 -70263910 + MER5A DNA MER1_type 61 189 0 449 311 49 27 chr6 112152199 112152382 -70262860 + MIR SINE MIR 25 211 -51 2256 50 0 0 chr6 112152750 112153029 -70262213 + L1PA7 LINE L1 5873 6151 -3 2483 67 0 0 chr6 112153076 112153376 -70261866 + AluY SINE Alu 1 300 -11 351 0 0 0 chr6 112153622 112153661 -70261581 + (CA)n Simple_repeat Simple_repeat 2 40 0 1292 212 29 19 chr6 112153665 112154042 -70261200 + L1ME1 LINE L1 4918 5298 -848 434 179 48 0 chr6 112154066 112154169 -70261073 + L1ME1 LINE L1 5496 5608 -558 576 279 34 42 chr6 112154218 112154455 -70260787 + L1ME1 LINE L1 5911 6145 -21 270 145 188 0 chr6 112154771 112154840 -70260402 + MLT2C1 LTR ERVL 1 82 -315 5341 115 225 76 chr6 112154861 112156337 -70258905 + pTR5 LTR ERV1 743 2438 0 1703 119 110 12 chr6 112156343 112156843 -70258399 - MER51A LTR ERV1 -23 611 1 769 260 68 7 chr6 112156843 112157124 -70258118 + MLT2C1 LTR ERVL 76 373 -24 333 318 35 29 chr6 112157199 112157514 -70257728 + L1M4 LINE L1 4557 4873 -1273 26 0 0 0 chr6 112158005 112158031 -70257211 + AT_rich Low_complexity Low_complexity 1 26 0 229 299 26 0 chr6 112158538 112158615 -70256627 + L2 LINE L2 3234 3312 -1 438 20 0 0 chr6 112160147 112160198 -70255044 + (TA)n Simple_repeat Simple_repeat 2 52 0 42 36 0 0 chr6 112160244 112160300 -70254942 + AT_rich Low_complexity Low_complexity 1 56 0 33951 29 0 2 chr6 112161107 112166169 -70249073 + L1PA2 LINE L1 1097 6148 -7 186 43 0 0 chr6 112166176 112166199 -70249043 + (TAA)n Simple_repeat Simple_repeat 3 25 0 300 70 0 0 chr6 112166199 112166242 -70249000 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 294 361 108 0 chr6 112166504 112166662 -70248580 + MIR3 SINE MIR 16 190 -18 2186 64 4 0 chr6 112171179 112171446 -70243796 - AluY SINE Alu -14 297 30 23 54 0 0 chr6 112171553 112171590 -70243652 + AT_rich Low_complexity Low_complexity 1 37 0 2164 109 0 3 chr6 112172483 112172789 -70242453 - AluSg SINE Alu 0 305 1 2827 10 0 0 chr6 112172903 112173213 -70242029 + AluYb8 SINE Alu 1 310 -8 558 123 12 0 chr6 112173216 112173297 -70241945 + AluJ/FLAM SINE Alu 1 82 -230 1715 178 6 23 chr6 112173397 112173746 -70241496 + MSTA-int LTR MaLR 556 898 -682 * 3098 168 18 12 chr6 112173744 112174317 -70240925 + MSTA-int LTR MaLR 802 1377 -203 1593 114 13 59 chr6 112174318 112174625 -70240617 - MER4A LTR ERV1 0 664 372 424 175 31 21 chr6 112174677 112174774 -70240468 - MER4A LTR ERV1 -566 98 1 1185 105 40 10 chr6 112174774 112174974 -70240268 + MSTA-int LTR MaLR 1375 1580 0 1599 153 175 24 chr6 112174974 112175322 -70239920 + MSTA LTR MaLR 1 410 -18 2489 112 31 8 chr6 112175322 112175678 -70239564 + THE1B LTR MaLR 1 364 0 1599 153 175 24 chr6 112175678 112175701 -70239541 + MSTA LTR MaLR 410 428 0 5857 97 26 3 chr6 112175701 112176843 -70238399 + L1PA13 LINE L1 4995 6159 -4 24 0 0 0 chr6 112177120 112177144 -70238098 + AT_rich Low_complexity Low_complexity 1 24 0 225 309 48 0 chr6 112177257 112177341 -70237901 + L2 LINE L2 3226 3313 0 1241 277 22 25 chr6 112177719 112177863 -70237379 + L1MEc LINE L1 2000 2143 -4072 2075 149 3 0 chr6 112177863 112178176 -70237066 + AluSx SINE Alu 1 314 0 1241 277 22 25 chr6 112178176 112178513 -70236729 + L1MEc LINE L1 2143 2435 -3780 2498 182 46 8 chr6 112178513 112179013 -70236229 - LTR53 LTR ERVL 0 519 1 1241 277 22 25 chr6 112179013 112179310 -70235932 + L1MEc LINE L1 2435 2731 -3484 11587 153 28 23 chr6 112179320 112181460 -70233782 - Tigger1 DNA MER2_type 0 2418 205 2093 121 4 0 chr6 112181460 112181741 -70233501 + AluSx SINE Alu 3 284 -28 11587 153 28 23 chr6 112181741 112181947 -70233295 - Tigger1 DNA MER2_type -2213 205 2 3448 210 101 12 chr6 112181947 112182976 -70232266 + L1MC3 LINE L1 5921 7041 -744 2014 166 72 2 chr6 112183093 112183538 -70231704 + L1MC3 LINE L1 7300 7775 -10 303 323 54 18 chr6 112184435 112184602 -70230640 + L1MEd LINE L1 732 904 -5215 1116 233 100 54 chr6 112184674 112185190 -70230052 + L1ME LINE L1 4901 5482 -682 1564 158 25 108 chr6 112185190 112185588 -70229654 + MLT1A1 LTR MaLR 1 365 0 1116 233 100 54 chr6 112185588 112185933 -70229309 + L1ME LINE L1 5482 5810 -354 415 272 98 52 chr6 112186068 112186355 -70228887 - MLT1J LTR MaLR -8 503 204 9131 177 30 27 chr6 112186363 112186457 -70228785 + L1M1 LINE L1 22 114 -7451 1956 86 21 101 chr6 112186457 112186784 -70228458 + AluSx SINE Alu 3 303 -9 9131 177 30 27 chr6 112186784 112189558 -70225684 + L1M1 LINE L1 114 3273 -4292 402 231 77 21 chr6 112189556 112189699 -70225543 - MST-int LTR MaLR -190 1461 1311 * 2816 13 0 0 chr6 112189850 112190159 -70225083 + AluYb8 SINE Alu 8 316 -2 1878 145 13 13 chr6 112190166 112190469 -70224773 + AluJb SINE Alu 1 303 -9 189 94 0 0 chr6 112190518 112190550 -70224692 + (A)n Simple_repeat Simple_repeat 1 32 0 1949 229 33 35 chr6 112191160 112191676 -70223566 - LTR40a LTR ERVL -1 518 4 518 265 19 25 chr6 112191685 112191847 -70223395 + MIR SINE MIR 89 249 -13 763 229 50 10 chr6 112193130 112193331 -70221911 + MER3 DNA MER1_type 1 209 0 374 346 46 11 chr6 112193376 112193564 -70221678 - MIR SINE MIR -67 141 3 228 358 106 32 chr6 112193820 112193943 -70221299 + L2 LINE L2 3121 3252 -20 602 296 6 12 chr6 112194769 112194941 -70220301 - MER5B DNA MER1_type 0 178 8 3564 146 7 11 chr6 112195371 112195979 -70219263 - MER6A DNA MER2_type 0 605 1 810 299 49 80 chr6 112196041 112196354 -70218888 + L2 LINE L2 2758 3046 -267 1875 159 0 3 chr6 112196354 112196650 -70218592 + AluJo SINE Alu 9 303 -9 810 299 49 80 chr6 112196650 112196910 -70218332 + L2 LINE L2 3046 3313 0 225 197 0 115 chr6 112197089 112197150 -70218092 - L2 LINE L2 0 3272 3219 228 86 0 0 chr6 112199440 112199475 -70215767 + (CA)n Simple_repeat Simple_repeat 1 35 0 272 309 34 39 chr6 112200130 112200308 -70214934 + L3b LINE CR1 1186 1362 -221 192 242 0 30 chr6 112200464 112200533 -70214709 - MIR3 SINE MIR -43 165 99 1237 213 63 98 chr6 112200553 112201067 -70214175 - MLT1F1 LTR MaLR -46 521 1 236 348 11 0 chr6 112201133 112201225 -70214017 + L3b LINE CR1 1370 1462 -121 1862 141 0 70 chr6 112201926 112202253 -70212989 - AluJo SINE Alu -8 304 1 508 287 110 57 chr6 112202446 112203112 -70212130 + L2 LINE L2 989 3313 0 292 251 54 25 chr6 112203960 112204047 -70211195 - MIR SINE MIR -63 145 103 1118 216 165 6 chr6 112204047 112204362 -70210880 - MLT1A1 LTR MaLR 0 365 1 292 251 54 25 chr6 112204362 112204386 -70210856 - MIR SINE MIR -105 103 81 810 188 5 97 chr6 112204806 112204992 -70210250 + AluJo SINE Alu 2 169 -143 2960 187 79 55 chr6 112205025 112206019 -70209223 - L1MC4 LINE L1 0 8042 6878 331 373 89 38 chr6 112206044 112206851 -70208391 - L2 LINE L2 -1660 1654 807 411 284 136 17 chr6 112207207 112207383 -70207859 - MIR SINE MIR -15 247 51 2063 135 0 0 chr6 112207763 112208071 -70207171 - AluSx SINE Alu 0 308 1 2424 49 0 33 chr6 112212425 112212729 -70202513 + AluY SINE Alu 1 294 -17 1344 228 87 6 chr6 112212877 112213224 -70202018 + MLT2F LTR ERVL 177 551 -112 320 186 36 14 chr6 112213280 112213420 -70201822 + (TA)n Simple_repeat Simple_repeat 1 143 0 44115 30 21 1 chr6 112215041 112221065 -70194177 + L1PA2 LINE L1 2 6148 -7 186 43 0 0 chr6 112221072 112221095 -70194147 + (TAA)n Simple_repeat Simple_repeat 3 25 0 300 70 0 0 chr6 112221095 112221138 -70194104 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 270 361 108 0 chr6 112221400 112221558 -70193684 + MIR3 SINE MIR 16 190 -18 1224 210 0 19 chr6 112225355 112225612 -70189630 + MIR SINE MIR 6 257 -5 2369 60 0 0 chr6 112225668 112225982 -70189260 - AluY SINE Alu 0 314 1 228 298 66 58 chr6 112226223 112226372 -70188870 + L2 LINE L2 2785 2934 -338 629 297 23 14 chr6 112226648 112226867 -70188375 - LTR16B LTR ERVL -180 284 64 249 347 13 0 chr6 112226868 112226943 -70188299 - MIR SINE MIR -180 82 7 745 106 0 0 chr6 112227213 112227317 -70187925 - L1MB1 LINE L1 -285 5904 5801 1953 165 84 32 chr6 112227317 112227687 -70187555 - MSTC LTR MaLR 0 428 40 239 269 13 13 chr6 112227836 112227914 -70187328 + T-rich Low_complexity Low_complexity 4 81 0 1027 238 33 0 chr6 112228594 112228808 -70186434 + MER58A DNA MER1_type 3 223 -1 470 211 61 106 chr6 112228817 112228997 -70186245 + MER5B DNA MER1_type 1 172 -6 443 241 75 5 chr6 112228998 112229166 -70186076 + MER89 LTR ERV1 1 281 -278 1231 99 0 12 chr6 112229266 112229438 -70185804 - AluY SINE Alu -141 170 1 422 262 43 30 chr6 112229561 112229709 -70185533 + L2 LINE L2 3148 3300 -13 246 62 0 0 chr6 112229709 112229741 -70185501 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 422 262 43 30 chr6 112229741 112229756 -70185486 + L2 LINE L2 3300 3313 0 970 145 40 0 chr6 112230563 112230715 -70184527 - MER7A DNA MER2_type -190 156 1 207 69 0 0 chr6 112230716 112230745 -70184497 + (CA)n Simple_repeat Simple_repeat 2 30 0 949 261 61 22 chr6 112230757 112231314 -70183928 + L1ME3 LINE L1 5165 5870 -292 2139 127 0 0 chr6 112231315 112231622 -70183620 - AluSq SINE Alu -6 307 1 526 244 51 6 chr6 112232148 112232304 -70182938 - MIR SINE MIR 0 262 100 2064 107 34 14 chr6 112232693 112232984 -70182258 + AluSx SINE Alu 5 301 -11 529 223 77 83 chr6 112233194 112233463 -70181779 - MLT1F1 LTR MaLR -285 282 14 478 236 28 137 chr6 112233609 112233931 -70181311 + L2 LINE L2 3027 3313 0 350 152 30 15 chr6 112234345 112234411 -70180831 - MLT1C LTR MaLR -5 462 396 1976 107 7 4 chr6 112234416 112234696 -70180546 - AluSp SINE Alu -27 286 6 262 309 71 78 chr6 112234968 112235250 -70179992 - L3 LINE CR1 -58 1519 1240 306 249 198 30 chr6 112235311 112235709 -70179533 + L2 LINE L2 2729 3191 -122 2090 177 22 39 chr6 112236267 112236554 -70178688 - L1PB4 LINE L1 -4 6152 5873 2096 115 6 34 chr6 112236554 112236875 -70178367 + AluSx SINE Alu 1 312 0 2090 177 22 39 chr6 112236875 112236994 -70178248 - L1PB4 LINE L1 -283 5873 5753 314 278 10 10 chr6 112238272 112238369 -70176873 + MIR SINE MIR 31 127 -135 1382 145 112 0 chr6 112238469 112238711 -70176531 + LTR34 LTR ERV1 431 699 0 2245 136 22 22 chr6 112238767 112239135 -70176107 - THE1C LTR MaLR -6 369 2 2410 87 0 3 chr6 112239288 112239600 -70175642 - AluY SINE Alu 0 311 1 730 300 109 20 chr6 112239778 112240452 -70174790 - HERV16 LTR ERVL -2140 2856 2113 751 205 81 0 chr6 112240549 112240710 -70174532 + MER96 DNA MER1_type 1 174 -1 537 302 31 16 chr6 112240980 112241235 -70174007 - HERV16 LTR ERVL -3828 1168 910 188 339 34 0 chr6 112242152 112242211 -70173031 - L2 LINE L2 -1 3271 3211 362 333 44 13 chr6 112242345 112242504 -70172738 + MLT1K LTR MaLR 258 421 -167 221 239 119 0 chr6 112242775 112242867 -70172375 - MIR SINE MIR -63 145 49 244 381 59 0 chr6 112242941 112243059 -70172183 + L2 LINE L2 3133 3257 -15 1101 145 193 10 chr6 112243381 112243588 -70171654 - AluSg1 SINE Alu -64 245 1 21 0 0 0 chr6 112243613 112243634 -70171608 + AT_rich Low_complexity Low_complexity 1 21 0 1531 216 27 37 chr6 112244244 112244437 -70170805 + MER93b LTR ERV1 1 190 -183 2279 12 0 0 chr6 112244437 112244681 -70170561 - L1PA2 LINE L1 0 6155 5912 1531 216 27 37 chr6 112244681 112244862 -70170380 + MER93b LTR ERV1 190 371 -2 1547 112 0 0 chr6 112245026 112245223 -70170019 - AluSc SINE Alu -112 197 1 808 232 132 6 chr6 112245237 112245558 -70169684 + L1M4 LINE L1 4459 4849 -1297 264 127 113 0 chr6 112245575 112245646 -70169596 - L1M LINE L1 -792 5378 5300 770 234 60 24 chr6 112245691 112245939 -70169303 + L1M4 LINE L1 4876 5132 -1014 720 195 0 0 chr6 112245992 112246110 -70169132 - Tigger3(Golem) DNA MER2_type 0 3038 2921 738 184 165 53 chr6 112246216 112246327 -70168915 - LTR50 LTR ERVL -564 231 134 2411 177 42 19 chr6 112246327 112246801 -70168441 + MER31A LTR ERV1 1 485 0 738 184 165 53 chr6 112246801 112246895 -70168347 - LTR50 LTR ERVL -661 134 3 288 284 78 10 chr6 112247147 112247249 -70167993 - L2 LINE L2 -8 3305 3197 668 184 99 7 chr6 112248194 112248335 -70166907 + L1MA10 LINE L1 6176 6329 -5 2111 184 10 31 chr6 112248388 112248780 -70166462 - MLT1B LTR MaLR -2 388 5 313 259 105 68 chr6 112249342 112249504 -70165738 + MIR3 SINE MIR 20 187 -21 261 0 0 0 chr6 112250137 112250166 -70165076 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 680 119 0 0 chr6 112250173 112250257 -70164985 - FLAM_C SINE Alu -25 118 35 2033 176 11 70 chr6 112250403 112250603 -70164639 + L1MDa LINE L1 16 226 -6314 1326 75 32 11 chr6 112250603 112250789 -70164453 - L1MA1 LINE L1 -14 6288 6099 2033 176 11 70 chr6 112250789 112251059 -70164183 + L1MDa LINE L1 226 458 -6082 351 248 101 16 chr6 112251062 112251191 -70164051 + L1ME1 LINE L1 5847 5986 -180 294 117 13 26 chr6 112251389 112251466 -70163776 + (TA)n Simple_repeat Simple_repeat 2 77 0 216 0 0 0 chr6 112253636 112253660 -70161582 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 242 308 103 100 chr6 112253665 112253986 -70161256 - L2 LINE L2 -12 3260 2939 254 301 39 33 chr6 112254065 112254218 -70161024 - MIR SINE MIR -77 185 32 227 314 38 38 chr6 112254530 112254695 -70160547 + MIR SINE MIR 18 187 -68 2157 135 3 0 chr6 112254735 112255032 -70160210 + AluSx SINE Alu 1 298 -14 482 221 0 0 chr6 112255186 112255281 -70159961 + MLT2E LTR ERVL 234 328 -300 648 239 19 13 chr6 112255334 112255493 -70159749 + MLT2E LTR ERVL 469 628 0 883 251 84 36 chr6 112255524 112255882 -70159360 + LTR33 LTR ERVL 115 489 -32 2025 181 24 26 chr6 112255882 112256520 -70158722 + L1M4 LINE L1 5000 5636 -548 891 242 40 5 chr6 112256620 112256843 -70158399 - L1M4 LINE L1 -1828 4318 4088 790 228 12 0 chr6 112257355 112257522 -70157720 + MER5A DNA MER1_type 21 189 0 407 327 19 12 chr6 112257789 112257951 -70157291 + MIR SINE MIR 30 192 -70 466 371 24 5 chr6 112258021 112258231 -70157011 + MIR SINE MIR 31 244 -18 451 108 108 0 chr6 112258478 112258561 -70156681 + LTR50 LTR ERVL 702 793 -2 323 308 61 15 chr6 112258611 112258772 -70156470 - MIR SINE MIR -54 208 44 381 299 30 37 chr6 112259024 112259188 -70156054 + MIR SINE MIR 26 188 -74 694 143 0 9 chr6 112259871 112259983 -70155259 + FRAM SINE Alu 66 176 0 2449 181 54 20 chr6 112259983 112260140 -70155102 + L1MB7 LINE L1 5664 5814 -370 2144 125 0 7 chr6 112260140 112260443 -70154799 + AluSx SINE Alu 1 301 -11 2449 181 54 20 chr6 112260443 112260789 -70154453 + L1MB7 LINE L1 5814 6184 0 272 171 0 0 chr6 112260789 112260830 -70154412 + LTR33 LTR ERVL 479 519 -2 202 293 47 28 chr6 112261046 112261152 -70154090 - MIR3 SINE MIR -16 192 85 357 296 68 39 chr6 112261336 112261553 -70153689 + MIR SINE MIR 16 241 -21 200 314 10 119 chr6 112261642 112261836 -70153406 - MER5A DNA MER1_type -16 173 1 574 183 0 10 chr6 112262527 112262631 -70152611 + MER49 LTR ERV1 1 103 -820 1834 119 11 4 chr6 112262735 112262995 -70152247 - AluSx SINE Alu -16 296 35 266 299 67 51 chr6 112263088 112263462 -70151780 - L1M4 LINE L1 -791 5355 4976 246 342 152 8 chr6 112263613 112263987 -70151255 - L1M4 LINE L1 -1007 5139 4712 356 286 70 75 chr6 112263989 112264548 -70150694 - L1M4 LINE L1 -1488 4658 4103 1546 191 36 23 chr6 112264644 112264822 -70150420 - AluJb SINE Alu 0 312 127 2071 102 0 27 chr6 112264822 112265117 -70150125 - AluSg SINE Alu -11 299 13 1546 191 36 23 chr6 112265117 112265241 -70150001 - AluJb SINE Alu -185 127 6 2124 313 70 37 chr6 112265458 112266712 -70148530 - ERVL LTR ERVL -366 5398 4103 2507 204 69 2 chr6 112266906 112267426 -70147816 - MER68 LTR ERV1 -7 555 1 629 168 0 25 chr6 112267497 112267513 -70147729 + GA-rich Low_complexity Low_complexity 4 19 -141 2230 82 6 38 chr6 112267513 112267832 -70147410 + AluY SINE Alu 1 309 -2 629 168 0 25 chr6 112267832 112267976 -70147266 + GA-rich Low_complexity Low_complexity 19 160 0 2066 185 88 35 chr6 112268232 112268712 -70146530 - MLT1D LTR MaLR 0 505 1 641 325 32 4 chr6 112270187 112270433 -70144809 + MIR SINE MIR 3 255 -7 373 307 100 7 chr6 112270807 112270957 -70144285 - MIR3 SINE MIR -24 184 21 417 329 67 13 chr6 112271120 112271269 -70143973 + MIR3 SINE MIR 2 158 -50 435 291 35 14 chr6 112271798 112271939 -70143303 + MLT1K LTR MaLR 278 421 -167 491 313 60 15 chr6 112272992 112273257 -70141985 - HAL1 LINE L1 -857 1650 1374 330 301 30 44 chr6 112273290 112273493 -70141749 - L1MEd LINE L1 -4941 1178 979 22 56 0 0 chr6 112273714 112273750 -70141492 + AT_rich Low_complexity Low_complexity 1 36 0 440 270 73 22 chr6 112274505 112274642 -70140600 + MIR SINE MIR 11 154 -108 436 296 43 48 chr6 112274720 112274906 -70140336 - MIR SINE MIR -43 219 35 395 286 61 7 chr6 112275171 112275318 -70139924 + MIR SINE MIR 65 219 -43 260 241 36 12 chr6 112275942 112276025 -70139217 + (TATG)n Simple_repeat Simple_repeat 3 87 0 753 253 85 18 chr6 112276092 112276457 -70138785 - L1ME LINE L1 -595 5567 5182 1415 294 46 34 chr6 112276601 112277192 -70138050 + ERVL LTR ERVL 2708 3305 -2459 607 323 70 7 chr6 112277563 112277863 -70137379 + LTR16A LTR ERVL 120 438 -12 850 85 8 31 chr6 112277924 112278054 -70137188 - THE1B LTR MaLR 0 364 238 1020 202 140 54 chr6 112278179 112278530 -70136712 + MLT1B LTR MaLR 10 390 0 2330 59 0 36 chr6 112279618 112279923 -70135319 - AluY SINE Alu -13 298 5 209 244 49 49 chr6 112280335 112280417 -70134825 + L2 LINE L2 2336 2417 -897 194 243 27 0 chr6 112280633 112280707 -70134535 + (CA)n Simple_repeat Simple_repeat 1 76 0 183 223 223 32 chr6 112281158 112281252 -70133990 + L2 LINE L2 3153 3264 -8 200 228 87 65 chr6 112281340 112281432 -70133810 - MIR SINE MIR -94 114 21 654 245 15 10 chr6 112282454 112282658 -70132584 + L1PA13 LINE L1 5939 6143 -20 706 222 87 14 chr6 112283098 112283305 -70131937 - L1ME3 LINE L1 0 6162 5941 2161 105 27 0 chr6 112283388 112283682 -70131560 - AluSp SINE Alu -11 302 1 25 31 0 0 chr6 112283733 112283765 -70131477 + AT_rich Low_complexity Low_complexity 1 32 0 227 31 31 0 chr6 112284203 112284235 -70131007 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 225 0 0 0 chr6 112284430 112284455 -70130787 + (GA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr6 112284984 112285009 -70130233 + AT_rich Low_complexity Low_complexity 1 25 0 1746 142 57 3 chr6 112285527 112285809 -70129433 + AluSx SINE Alu 12 308 -4 247 265 48 12 chr6 112286013 112286096 -70129146 + MIR SINE MIR 105 190 -72 186 43 0 0 chr6 112286652 112286675 -70128567 + (CAT)n Simple_repeat Simple_repeat 3 25 0 557 308 33 38 chr6 112287258 112287498 -70127744 + MIR SINE MIR 6 244 -18 296 234 0 0 chr6 112287685 112287749 -70127493 + MER5A DNA MER1_type 9 72 -117 1931 117 10 30 chr6 112287749 112288048 -70127194 + AluSc SINE Alu 11 303 -6 260 27 27 0 chr6 112288048 112288085 -70127157 + (GA)n Simple_repeat Simple_repeat 1 38 0 192 77 0 0 chr6 112288082 112288108 -70127134 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 * 303 257 193 9 chr6 112288109 112288218 -70127024 + MER5A DNA MER1_type 61 189 0 433 317 49 27 chr6 112289085 112289268 -70125974 + MIR SINE MIR 25 211 -51 2399 50 0 0 chr6 112289636 112289915 -70125327 + L1PA7 LINE L1 5873 6151 -3 2496 67 0 0 chr6 112289962 112290262 -70124980 + AluY SINE Alu 1 300 -11 351 0 0 0 chr6 112290508 112290547 -70124695 + (CA)n Simple_repeat Simple_repeat 2 40 0 1460 215 53 15 chr6 112290547 112291057 -70124185 + L1ME1 LINE L1 4914 5610 -556 668 285 45 36 chr6 112291054 112291344 -70123898 + L1ME1 LINE L1 5858 6148 -18 * 304 145 188 0 chr6 112291657 112291726 -70123516 + MLT2C1 LTR ERVL 1 82 -315 5931 115 225 76 chr6 112291747 112293223 -70122019 + pTR5 LTR ERV1 743 2438 0 1884 115 112 12 chr6 112293229 112293728 -70121514 - MER51A LTR ERV1 -23 611 1 884 261 67 7 chr6 112293728 112294018 -70121224 + MLT2C1 LTR ERVL 76 647 -16 454 311 35 29 chr6 112294084 112294399 -70120843 + L1M4 LINE L1 4557 4873 -1273 26 0 0 0 chr6 112294890 112294916 -70120326 + AT_rich Low_complexity Low_complexity 1 26 0 213 299 26 0 chr6 112295423 112295500 -70119742 + L2 LINE L2 3234 3312 -1 438 20 0 0 chr6 112297032 112297083 -70118159 + (TA)n Simple_repeat Simple_repeat 2 52 0 35 41 0 0 chr6 112297129 112297178 -70118064 + AT_rich Low_complexity Low_complexity 1 49 0 36560 26 0 2 chr6 112297990 112303058 -70112184 + L1PA2 LINE L1 1097 6155 0 396 274 8 12 chr6 112304232 112304355 -70110887 - MLT1J2 LTR MaLR -226 183 65 2299 102 3 3 chr6 112305669 112305972 -70109270 + AluY SINE Alu 1 303 -8 260 345 133 37 chr6 112310066 112310388 -70104854 + L2 LINE L2 2877 3229 -43 1853 136 75 23 chr6 112311651 112311997 -70103245 + THE1B LTR MaLR 1 364 0 438 236 321 5 chr6 112312337 112312549 -70102693 + MER5C DNA MER1_type 45 323 -1 987 179 92 0 chr6 112312757 112312941 -70102301 + MER58A DNA MER1_type 24 224 0 459 269 31 23 chr6 112313497 112313627 -70101615 - MLT1J2 LTR MaLR -37 413 283 382 168 0 3 chr6 112313686 112313760 -70101482 - MLT1J1 LTR MaLR -302 107 35 471 318 52 32 chr6 112315046 112315298 -70099944 - LTR67 LTR ERVL -8 549 293 350 364 100 0 chr6 112315347 112315487 -70099755 - LTR67 LTR ERVL -266 291 138 561 86 0 12 chr6 112315836 112315917 -70099325 + MADE1 DNA Mariner 1 80 0 273 241 76 38 chr6 112316595 112316674 -70098568 + L2 LINE L2 3180 3261 -11 222 245 0 0 chr6 112318875 112318924 -70096318 - L2 LINE L2 0 3313 3265 357 270 0 22 chr6 112319523 112319612 -70095630 + L2 LINE L2 3227 3313 0 29 0 0 0 chr6 112320480 112320509 -70094733 + AT_rich Low_complexity Low_complexity 1 29 0 2336 82 0 16 chr6 112320511 112320815 -70094427 + AluY SINE Alu 1 299 -12 598 226 154 39 chr6 112320931 112321101 -70094141 - HAL1 LINE L1 -160 2347 2198 2342 157 18 47 chr6 112321101 112321546 -70093696 + MSTB1 LTR MaLR 1 432 0 598 226 154 39 chr6 112321546 112321600 -70093642 - HAL1 LINE L1 -309 2198 2152 2501 142 30 23 chr6 112321600 112322031 -70093211 - Tigger2a DNA MER2_type 0 434 1 598 226 154 39 chr6 112322031 112322111 -70093131 - HAL1 LINE L1 -355 2152 2007 233 304 294 0 chr6 112322325 112322417 -70092825 + L2 LINE L2 3178 3296 -17 394 233 146 71 chr6 112323241 112323481 -70091761 + MER102b DNA MER1_type 84 341 0 318 218 0 0 chr6 112325331 112325386 -70089856 + Charlie5 DNA MER1_type 1 55 -2557 1481 30 0 60 chr6 112325388 112325589 -70089653 - L1PA10 LINE L1 -276 5892 5704 1704 131 39 0 chr6 112325589 112325849 -70089393 + L1PA10 LINE L1 5867 6136 -32 612 123 20 118 chr6 112325850 112325969 -70089273 + Charlie5 DNA MER1_type 2409 2503 -82 1757 102 78 4 chr6 112325969 112326225 -70089017 - AluJb SINE Alu -17 295 21 612 123 20 118 chr6 112326225 112326300 -70088942 + Charlie5 DNA MER1_type 2503 2584 -1 30 59 0 0 chr6 112329562 112329613 -70085629 + AT_rich Low_complexity Low_complexity 1 51 0 527 72 0 0 chr6 112330570 112330639 -70084603 - Alu SINE Alu -244 74 6 801 268 222 47 chr6 112331115 112331868 -70083374 + HAL1 LINE L1 1345 2229 -278 337 153 0 0 chr6 112331873 112331932 -70083310 + MER53 DNA DNA 2 60 -129 26 30 0 0 chr6 112332905 112332938 -70082304 + AT_rich Low_complexity Low_complexity 1 33 0 339 85 0 0 chr6 112334802 112334849 -70080393 + (TC)n Simple_repeat Simple_repeat 1 47 0 920 213 28 14 chr6 112336003 112336219 -70079023 - MER20 DNA MER1_type 0 219 1 191 268 171 0 chr6 112337182 112337264 -70077978 + MIR SINE MIR 59 154 -108 243 322 45 60 chr6 112337473 112337672 -70077570 + L3 LINE CR1 1371 1566 -11 308 301 0 0 chr6 112340835 112340908 -70074334 - L2 LINE L2 -3 3269 3197 392 289 31 50 chr6 112341314 112341473 -70073769 + MIR SINE MIR 76 231 -31 182 306 59 47 chr6 112341688 112341773 -70073469 + L2 LINE L2 2961 3046 -226 466 82 0 0 chr6 112342471 112342544 -70072698 - L1PA4 LINE L1 0 6155 6083 459 36 0 0 chr6 112342544 112342599 -70072643 + L1PA4 LINE L1 6034 6088 -67 330 26 0 0 chr6 112344194 112344233 -70071009 + (TC)n Simple_repeat Simple_repeat 1 39 0 1085 256 74 81 chr6 112344257 112344838 -70070404 + MLT1L LTR MaLR 38 614 -1 521 318 88 13 chr6 112345063 112345302 -70069940 + MIR SINE MIR 1 257 -5 1373 217 102 19 chr6 112345570 112345934 -70069308 - MSTD LTR MaLR 0 396 3 2396 236 30 2 chr6 112345936 112346432 -70068810 - MSTD-int LTR MaLR 0 1735 1226 * 2706 217 27 10 chr6 112346429 112347019 -70068223 - MSTD-int LTR MaLR -1134 601 2 1481 168 37 112 chr6 112347021 112347449 -70067793 - MSTD LTR MaLR 0 396 1 23 0 0 0 chr6 112347911 112347934 -70067308 + AT_rich Low_complexity Low_complexity 1 23 0 290 314 97 16 chr6 112347955 112348079 -70067163 - L2 LINE L2 -6 3266 3133 192 333 174 8 chr6 112348516 112348648 -70066594 + MIR SINE MIR 99 252 -10 303 114 68 0 chr6 112349104 112349148 -70066094 + 5S rRNA rRNA 19 65 -56 199 250 0 0 chr6 112349255 112349303 -70065939 + L2 LINE L2 3025 3072 -200 330 246 98 49 chr6 112349392 112349514 -70065728 - MIR SINE MIR -70 192 65 1330 216 117 60 chr6 112349519 112350006 -70065236 - MLT2B2 LTR ERVL 0 515 1 306 228 0 0 chr6 112350398 112350455 -70064787 - MER117 DNA MER1_type -140 57 1 273 345 69 20 chr6 112351174 112351377 -70063865 - L2 LINE L2 -235 3037 2825 254 286 143 42 chr6 112351710 112351878 -70063364 - L2 LINE L2 -914 2400 2216 574 277 9 95 chr6 112351896 112352127 -70063115 + Charlie8 DNA MER1_type 26 236 -2181 2058 41 0 0 chr6 112352434 112352680 -70062562 + L1PA3 LINE L1 5907 6152 -3 34 55 0 0 chr6 112352792 112352847 -70062395 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr6 112355476 112355501 -70059741 + AT_rich Low_complexity Low_complexity 1 25 0 407 19 19 0 chr6 112356134 112356186 -70059056 + (TA)n Simple_repeat Simple_repeat 1 53 0 337 335 24 24 chr6 112356669 112356833 -70058409 - MIR3 SINE MIR -12 196 33 2540 243 69 37 chr6 112357081 112357960 -70057282 + L1MDa LINE L1 306 1302 -5238 5955 134 21 8 chr6 112357961 112358027 -70057215 + L1MA8 LINE L1 4697 4761 -1530 2149 116 10 10 chr6 112358027 112358328 -70056914 + AluSx SINE Alu 1 301 -11 306 0 0 0 chr6 112358328 112358362 -70056880 + (TA)n Simple_repeat Simple_repeat 2 35 0 5955 134 21 8 chr6 112358362 112359847 -70055395 + L1MA8 LINE L1 4760 6264 -27 943 207 15 45 chr6 112359858 112360124 -70055118 + L1MDa LINE L1 1296 1553 -4987 308 363 65 0 chr6 112360189 112360313 -70054929 + L2 LINE L2 3141 3272 0 910 291 94 38 chr6 112361178 112361624 -70053618 + LTR33 LTR ERVL 47 517 -4 191 55 55 55 chr6 112361752 112361807 -70053435 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 4714 167 45 16 chr6 112362075 112362907 -70052335 + MER21B LTR ERV1 1 856 -7 467 252 82 14 chr6 112364570 112364717 -70050525 + MIR SINE MIR 57 213 -49 2356 130 89 10 chr6 112364813 112365206 -70050036 + MSTC LTR MaLR 1 424 -4 741 114 45 8 chr6 112365336 112365468 -70049774 - FRAM SINE Alu 0 176 40 292 272 49 0 chr6 112365537 112365618 -70049624 + MIR3 SINE MIR 86 170 -38 525 243 7 28 chr6 112365897 112366041 -70049201 - MER99 DNA DNA -4 824 684 1548 205 46 9 chr6 112366070 112366100 -70049142 - MER99 DNA DNA -272 556 529 2447 75 0 0 chr6 112366100 112366405 -70048837 - AluY SINE Alu -6 305 1 1548 205 46 9 chr6 112366405 112366721 -70048521 - MER99 DNA DNA -299 529 197 2342 58 0 45 chr6 112366784 112367096 -70048146 + AluY SINE Alu 1 298 -13 1844 18 22 13 chr6 112367226 112367455 -70047787 + L1PA7 LINE L1 5924 6154 0 290 247 200 0 chr6 112367976 112368061 -70047181 - MER99 DNA DNA -725 103 2 326 273 77 56 chr6 112368098 112368241 -70047001 - MLT1J LTR MaLR -238 273 128 346 336 66 0 chr6 112370189 112370326 -70044916 + MIR3 SINE MIR 30 175 -33 373 188 176 97 chr6 112372032 112372197 -70043045 - L2 LINE L2 -3 3310 3133 30 69 0 0 chr6 112373047 112373105 -70042137 + AT_rich Low_complexity Low_complexity 1 58 0 21 36 0 0 chr6 112373211 112373239 -70042003 + AT_rich Low_complexity Low_complexity 1 28 0 227 296 114 15 chr6 112373511 112373663 -70041579 - MIR SINE MIR -62 146 15 357 226 190 14 chr6 112374451 112374672 -70040570 - L1MC5 LINE L1 -87 7874 7615 507 87 0 189 chr6 112374672 112374767 -70040475 + L1MA8 LINE L1 6183 6250 -41 1611 206 0 0 chr6 112374767 112375049 -70040193 - AluJo SINE Alu -30 282 1 507 87 0 189 chr6 112375049 112375080 -70040162 + L1MA8 LINE L1 6250 6285 -6 569 263 103 0 chr6 112375118 112375312 -70039930 - L1MC5 LINE L1 -412 7549 7336 362 287 34 16 chr6 112375574 112375698 -70039544 - MIR SINE MIR -62 146 62 1358 200 171 6 chr6 112375819 112376159 -70039083 - MSTD LTR MaLR 0 396 1 4854 23 0 0 chr6 112376289 112376902 -70038340 - L1PA4 LINE L1 -335 5820 5208 2913 34 3 0 chr6 112376902 112377252 -70037990 + L1PA4 LINE L1 5800 6152 -3 521 266 104 3 chr6 112378294 112378465 -70036777 + MIR SINE MIR 60 252 -10 25 51 0 0 chr6 112378465 112378504 -70036738 + AT_rich Low_complexity Low_complexity 1 39 0 507 250 61 12 chr6 112379441 112379605 -70035637 + MER63A DNA MER1_type 3 174 -36 389 254 56 24 chr6 112380153 112380279 -70034963 + MIR SINE MIR 23 152 -56 395 264 68 47 chr6 112381408 112381620 -70033622 - LTR33 LTR ERVL 0 521 298 1181 203 60 2 chr6 112381637 112381950 -70033292 - MER33 DNA MER1_type 0 324 1 225 255 20 0 chr6 112381996 112382047 -70033195 - LTR33 LTR ERVL -380 141 90 308 348 76 0 chr6 112382620 112382738 -70032504 + MIR SINE MIR 21 147 -61 400 340 135 0 chr6 112382778 112382919 -70032323 - L2 LINE L2 -2 3270 3111 234 320 13 0 chr6 112383060 112383135 -70032107 + MIR SINE MIR 66 141 -121 22 70 0 0 chr6 112383409 112383452 -70031790 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 112383466 112383488 -70031754 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 112383928 112383950 -70031292 + AT_rich Low_complexity Low_complexity 1 22 0 1473 193 44 15 chr6 112384235 112384509 -70030733 + AluJo SINE Alu 1 282 -30 185 0 0 39 chr6 112384512 112384538 -70030704 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 24 0 0 0 chr6 112384618 112384642 -70030600 + AT_rich Low_complexity Low_complexity 1 24 0 352 351 145 33 chr6 112385388 112385781 -70029461 + L2 LINE L2 2821 3257 -15 193 263 26 0 chr6 112387237 112387275 -70027967 - L2 LINE L2 -2922 392 354 751 291 34 17 chr6 112387393 112387688 -70027554 - L1MEc LINE L1 -1958 4171 3872 884 175 7 0 chr6 112387691 112387717 -70027525 - LTR40b LTR ERVL 0 462 438 2880 47 17 0 chr6 112387717 112388079 -70027163 - L1PA7 LINE L1 0 6154 5787 884 175 7 0 chr6 112388079 112388206 -70027036 - LTR40b LTR ERVL -24 438 308 570 266 138 22 chr6 112388210 112388623 -70026619 - L1MEc LINE L1 -2863 3266 2806 211 250 17 0 chr6 112388677 112388737 -70026505 + (TA)n Simple_repeat Simple_repeat 1 61 0 356 261 162 59 chr6 112388822 112389075 -70026167 - L1MEc LINE L1 -3611 2518 2240 2169 110 0 7 chr6 112389146 112389445 -70025797 - AluSc SINE Alu -8 301 5 350 274 68 59 chr6 112389453 112389672 -70025570 - L1MEc LINE L1 -4117 2193 1973 257 305 63 22 chr6 112389993 112390262 -70024980 - L1MEc LINE L1 -4719 1591 1312 281 258 137 58 chr6 112390328 112390692 -70024550 - L1MEc LINE L1 -4916 1203 811 378 243 41 53 chr6 112391030 112391199 -70024043 + L2 LINE L2 3142 3308 -5 198 0 0 0 chr6 112391930 112391952 -70023290 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 1340 223 3 27 chr6 112392020 112392320 -70022922 - AluJb SINE Alu -19 293 1 387 0 0 0 chr6 112392718 112392761 -70022481 + (TG)n Simple_repeat Simple_repeat 2 44 0 182 236 101 56 chr6 112393326 112393415 -70021827 - L2 LINE L2 -4 3268 3176 1388 186 97 4 chr6 112393953 112394211 -70021031 + AluJo SINE Alu 1 282 -30 30 0 0 0 chr6 112394211 112394241 -70021001 + AT_rich Low_complexity Low_complexity 1 30 0 315 331 48 7 chr6 112394946 112395091 -70020151 - ERVL LTR ERVL -693 5071 4921 255 122 44 44 chr6 112395400 112395490 -70019752 + (TA)n Simple_repeat Simple_repeat 2 91 0 198 273 91 126 chr6 112395576 112395719 -70019523 - MIR SINE MIR -109 153 16 424 306 81 17 chr6 112396442 112396677 -70018565 - MIR SINE MIR 0 262 13 268 95 24 0 chr6 112396688 112396730 -70018512 + L2 LINE L2 3271 3313 0 542 308 89 17 chr6 112399411 112399648 -70015594 - MIR SINE MIR -1 261 8 279 203 0 0 chr6 112400172 112400246 -70014996 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 2130 171 121 41 chr6 112400398 112400785 -70014457 - MLT1D LTR MaLR -5 500 69 1778 148 0 56 chr6 112400785 112401088 -70014154 + AluJb SINE Alu 1 286 -26 2130 171 121 41 chr6 112401088 112401162 -70014080 - MLT1D LTR MaLR -436 69 2 2073 229 78 6 chr6 112401288 112401804 -70013438 + L2 LINE L2 2158 2710 -604 987 316 34 19 chr6 112401819 112402231 -70013011 + LTR16A LTR ERVL 25 442 -8 701 257 121 55 chr6 112402242 112402720 -70012522 + L2 LINE L2 2709 3313 0 456 302 70 23 chr6 112402723 112402938 -70012304 - MIR SINE MIR -19 243 19 26 0 0 0 chr6 112404211 112404237 -70011005 + AT_rich Low_complexity Low_complexity 1 26 0 909 254 23 0 chr6 112405036 112405256 -70009986 - MIR SINE MIR -37 225 1 345 47 0 0 chr6 112406186 112406229 -70009013 + (CA)n Simple_repeat Simple_repeat 1 43 0 28 0 0 0 chr6 112406822 112406850 -70008392 + AT_rich Low_complexity Low_complexity 1 28 0 400 307 69 10 chr6 112407754 112407956 -70007286 + MIR SINE MIR 28 241 -21 195 311 34 59 chr6 112408590 112408709 -70006533 - MIR SINE MIR -56 206 91 409 309 32 8 chr6 112410497 112410623 -70004619 + MIR3 SINE MIR 36 164 -44 355 299 89 19 chr6 112410625 112410782 -70004460 + MER117 DNA MER1_type 4 171 -26 841 117 0 0 chr6 112411717 112411845 -70003397 + L1MA9 LINE L1 6180 6307 -5 346 318 48 31 chr6 112412304 112412563 -70002679 + L2 LINE L2 2722 2986 -327 521 259 65 7 chr6 112412592 112412731 -70002511 + L2 LINE L2 3121 3267 -5 1573 181 44 4 chr6 112413223 112413542 -70001700 - MLT2C1 LTR ERVL -8 406 28 291 281 55 31 chr6 112413826 112413954 -70001288 + MLT1I LTR MaLR 246 376 -33 631 264 239 16 chr6 112414718 112415028 -70000214 + LTR50 LTR ERVL 1 379 -416 384 362 76 5 chr6 112415046 112415231 -70000011 + MIR3 SINE MIR 4 201 -7 307 299 111 0 chr6 112415421 112415538 -69999704 + Charlie8 DNA MER1_type 1 130 -2287 236 343 14 48 chr6 112415543 112415689 -69999553 - MIR3 SINE MIR -52 156 16 198 300 0 0 chr6 112416109 112416169 -69999073 + L2 LINE L2 1962 2021 -1293 1833 99 81 0 chr6 112416290 112416574 -69998668 + L1MA2 LINE L1 5982 6288 -16 245 231 22 66 chr6 112416588 112416679 -69998563 - MIR SINE MIR -108 154 68 1829 126 67 62 chr6 112416809 112416847 -69998395 - THE1C LTR MaLR 0 375 339 1934 130 0 67 chr6 112416847 112417162 -69998080 + AluSx SINE Alu 1 294 -18 1829 126 67 62 chr6 112417162 112417496 -69997746 - THE1C LTR MaLR -36 339 1 197 231 19 0 chr6 112417539 112417591 -69997651 + L2 LINE L2 2234 2286 -1028 473 266 215 0 chr6 112417629 112417787 -69997455 + MIR SINE MIR 63 254 -8 195 100 0 0 chr6 112417788 112417818 -69997424 + (TTA)n Simple_repeat Simple_repeat 3 32 0 302 330 42 17 chr6 112418484 112418602 -69996640 - MIR3 SINE MIR -9 199 79 224 263 76 85 chr6 112419220 112419338 -69995904 + L2 LINE L2 3140 3256 -16 210 188 21 0 chr6 112420183 112420231 -69995011 + T-rich Low_complexity Low_complexity 6 54 0 459 52 0 0 chr6 112420231 112420289 -69994953 + (TGG)n Simple_repeat Simple_repeat 1 58 0 791 294 29 33 chr6 112420586 112420892 -69994350 - L2 LINE L2 -4 3309 3005 21 0 0 0 chr6 112420951 112420972 -69994270 + AT_rich Low_complexity Low_complexity 1 21 0 371 175 58 4 chr6 112421356 112421443 -69993799 + MLT1F1 LTR MaLR 5 95 -474 908 245 195 10 chr6 112421484 112421560 -69993682 + MLT1F1 LTR MaLR 210 271 -296 2476 92 25 8 chr6 112421560 112421918 -69993324 - THE1B LTR MaLR 0 364 1 908 245 195 10 chr6 112421918 112422143 -69993099 + MLT1F1 LTR MaLR 271 567 0 2399 125 53 22 chr6 112422791 112423206 -69992036 + MSTC LTR MaLR 1 428 0 213 159 23 0 chr6 112424087 112424131 -69991111 + (TA)n Simple_repeat Simple_repeat 2 46 0 1966 102 32 48 chr6 112424595 112424910 -69990332 - AluSq SINE Alu -3 310 1 1153 140 19 0 chr6 112425445 112425652 -69989590 + L1MD3 LINE L1 7785 7995 0 298 336 55 23 chr6 112427875 112428003 -69987239 - L2 LINE L2 -5 3267 3136 296 286 7 86 chr6 112428191 112428331 -69986911 - MIR SINE MIR -50 212 84 22 35 0 0 chr6 112428653 112428682 -69986560 + AT_rich Low_complexity Low_complexity 1 29 0 2990 50 5 8 chr6 112430382 112430764 -69984478 - L1PA4 LINE L1 0 6155 5775 2104 127 3 0 chr6 112430863 112431155 -69984087 - AluSx SINE Alu -19 293 1 202 296 69 88 chr6 112432122 112432281 -69982961 - L2 LINE L2 -27 3245 3090 789 302 73 4 chr6 112433637 112433869 -69981373 - MIR SINE MIR 0 262 15 469 271 197 18 chr6 112434374 112434658 -69980584 + L1ME4a LINE L1 5787 6121 0 207 289 3 0 chr6 112434932 112434992 -69980250 + MIR SINE MIR 91 152 -56 251 105 26 0 chr6 112435033 112435071 -69980171 + MLT1F1 LTR MaLR 384 422 -145 252 194 0 16 chr6 112435373 112435435 -69979807 + CT-rich Low_complexity Low_complexity 3 63 0 262 378 25 0 chr6 112436151 112436270 -69978972 + L2 LINE L2 3151 3272 0 2180 132 0 10 chr6 112437838 112438149 -69977093 + AluSc SINE Alu 1 308 -1 224 217 29 43 chr6 112438172 112438241 -69977001 - MER5A DNA MER1_type -25 164 97 24 91 0 0 chr6 112438251 112438317 -69976925 + AT_rich Low_complexity Low_complexity 1 66 0 239 308 131 0 chr6 112438702 112438809 -69976433 + L2 LINE L2 3193 3313 0 2844 86 3 0 chr6 112439172 112439546 -69975696 - THE1C LTR MaLR 0 375 1 33 0 0 0 chr6 112439897 112439930 -69975312 + AT_rich Low_complexity Low_complexity 1 33 0 1521 169 14 55 chr6 112439930 112440220 -69975022 - AluJo SINE Alu -29 283 6 923 182 47 0 chr6 112440549 112440719 -69974523 - MER97c DNA MER1_type? -911 179 2 275 302 8 24 chr6 112441447 112441573 -69973669 - MER103 DNA DNA 0 166 43 1649 167 65 0 chr6 112442175 112442451 -69972791 + AluSx SINE Alu 1 294 -18 489 284 63 130 chr6 112444393 112444808 -69970434 - L2 LINE L2 0 3272 2886 463 254 69 46 chr6 112444938 112445111 -69970131 + MLT1K LTR MaLR 73 249 -339 4317 202 85 4 chr6 112445130 112446061 -69969181 + MER45B DNA AcHobo 3 1008 -32 500 239 42 142 chr6 112446121 112446410 -69968832 + MLT1K LTR MaLR 322 581 -7 42 48 0 0 chr6 112446544 112446607 -69968635 + AT_rich Low_complexity Low_complexity 1 63 0 2264 167 52 7 chr6 112446655 112447063 -69968179 + MSTB LTR MaLR 1 426 0 3672 28 0 0 chr6 112447727 112448157 -69967085 - L1PA5 LINE L1 -6 6148 5719 1271 62 0 0 chr6 112448157 112448317 -69966925 + L1PA5 LINE L1 5568 5727 -427 797 246 47 97 chr6 112450299 112450641 -69964601 - MER102a DNA MER1_type -5 325 1 435 210 259 14 chr6 112450960 112451103 -69964139 - MER5B DNA MER1_type 0 178 1 29 0 0 0 chr6 112452254 112452283 -69962959 + AT_rich Low_complexity Low_complexity 1 29 0 1304 140 14 0 chr6 112452290 112452497 -69962745 - MER2 DNA MER2_type -134 211 2 2720 100 11 0 chr6 112452733 112453093 -69962149 + THE1B LTR MaLR 1 364 0 348 242 183 8 chr6 112453365 112453485 -69961757 - MIR SINE MIR -40 222 82 309 82 0 0 chr6 112454347 112454396 -69960846 + (CA)n Simple_repeat Simple_repeat 2 50 0 466 299 101 43 chr6 112454574 112454882 -69960360 + L1MC4a LINE L1 5599 5931 -1877 479 68 0 27 chr6 112454882 112454955 -69960287 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 466 299 101 43 chr6 112454955 112454994 -69960248 + L1MC4a LINE L1 5931 5966 -1842 32 47 0 16 chr6 112455130 112455164 -69960078 + AT_rich Low_complexity Low_complexity 1 35 -28 1640 199 3 14 chr6 112455164 112455455 -69959787 + AluJo SINE Alu 1 288 -24 32 47 0 16 chr6 112455455 112455484 -69959758 + AT_rich Low_complexity Low_complexity 35 63 0 606 298 74 45 chr6 112455791 112456304 -69958938 + HAL1 LINE L1 1155 1682 -825 223 279 0 0 chr6 112456393 112456454 -69958788 + A-rich Low_complexity Low_complexity 1 61 0 395 214 0 79 chr6 112456716 112456842 -69958400 + HAL1b LINE L1 754 869 -479 681 210 0 0 chr6 112457193 112457470 -69957772 + (CATTC)n Satellite Satellite 1 277 0 741 163 0 0 chr6 112457483 112457661 -69957581 + (CATTC)n Satellite Satellite 3 180 0 747 173 0 0 chr6 112457673 112457980 -69957262 + (CATTC)n Satellite Satellite 1 307 0 684 206 0 0 chr6 112458027 112458361 -69956881 + (CATTC)n Satellite Satellite 1 334 0 186 150 0 0 chr6 112458386 112458426 -69956816 + (CATTC)n Satellite Satellite 1 40 0 872 122 6 0 chr6 112458444 112458608 -69956634 + (CATTC)n Satellite Satellite 4 168 0 725 163 3 19 chr6 112458631 112458950 -69956292 + (CATTC)n Satellite Satellite 1 314 0 663 185 1 2 chr6 112458968 112459643 -69955599 + (CATTC)n Satellite Satellite 1 674 0 787 272 81 20 chr6 112459977 112460223 -69955019 - MIR SINE MIR 0 262 2 2012 129 4 0 chr6 112460429 112460739 -69954503 + AluSx SINE Alu 1 311 0 210 233 150 0 chr6 112460971 112461031 -69954211 - L2 LINE L2 -47 3225 3157 748 253 106 26 chr6 112462244 112462509 -69952733 + MLT1L LTR MaLR 330 615 0 234 281 0 0 chr6 112463966 112464030 -69951212 + L1MD3 LINE L1 7854 7917 -78 1408 156 0 36 chr6 112464046 112464294 -69950948 + L1P LINE L1 3507 3746 -2400 1846 160 48 0 chr6 112464294 112464587 -69950655 + AluJb SINE Alu 1 307 -5 1408 156 0 36 chr6 112464587 112464614 -69950628 + L1P LINE L1 3746 3772 -2374 * 4028 214 34 76 chr6 112464607 112465955 -69949287 + L1PA11 LINE L1 737 2139 -5445 2204 83 0 4 chr6 112465955 112466232 -69949010 + AluY SINE Alu 1 276 -35 4028 214 34 76 chr6 112466232 112466252 -69948990 + L1PA11 LINE L1 2139 2158 -5426 372 55 0 0 chr6 112466252 112466307 -69948935 + Alu SINE Alu 247 301 0 4028 214 34 76 chr6 112466307 112467056 -69948186 + L1PA11 LINE L1 2158 3629 -3955 16585 166 28 9 chr6 112467071 112473804 -69941438 + L1PB1 LINE L1 1 6862 -5 13479 151 10 10 chr6 112473820 112476301 -69938941 + L1PA11 LINE L1 3614 6093 -1491 2024 153 39 21 chr6 112476301 112476798 -69938444 + MLT2A2 LTR ERVL 1 412 -41 467 9 116 0 chr6 112476800 112476912 -69938330 + (TA)n Simple_repeat Simple_repeat 2 126 0 386 73 0 0 chr6 112476922 112476977 -69938265 + MLT2A2 LTR ERVL 399 453 0 5983 119 4 11 chr6 112476977 112478524 -69936718 + L1PA11 LINE L1 6089 7612 0 21 0 0 0 chr6 112478602 112478623 -69936619 + AT_rich Low_complexity Low_complexity 1 21 0 1462 208 15 11 chr6 112478936 112479210 -69936032 + AluJb SINE Alu 6 280 -32 204 40 0 0 chr6 112479210 112479235 -69936007 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 29407 115 10 53 chr6 112479249 112485673 -69929569 + L1PA7 LINE L1 12 6154 0 23 0 0 0 chr6 112485674 112485697 -69929545 + AT_rich Low_complexity Low_complexity 1 23 0 1453 197 27 24 chr6 112485709 112486003 -69929239 + AluJo SINE Alu 8 302 -10 256 211 337 0 chr6 112486033 112486128 -69929114 - MIR3 SINE MIR -1 207 81 212 323 192 15 chr6 112486707 112486837 -69928405 - L2 LINE L2 -5 3267 3115 3247 170 27 22 chr6 112487071 112487968 -69927274 + L1MC2 LINE L1 4525 4931 -1215 1988 117 33 0 chr6 112487968 112488281 -69926961 + AluSg SINE Alu 1 322 0 3247 170 27 22 chr6 112488281 112488755 -69926487 + L1MC2 LINE L1 4931 5401 -745 365 149 0 0 chr6 112488798 112488865 -69926377 + LTR22B LTR ERVK 1 67 -425 282 170 0 0 chr6 112488897 112488950 -69926292 - LTR22B LTR ERVK -406 86 34 1591 185 51 29 chr6 112489083 112489494 -69925748 + L1MC2 LINE L1 5917 6336 -8 338 276 166 6 chr6 112489677 112489840 -69925402 + MER5A DNA MER1_type 1 189 0 1222 144 5 0 chr6 112490696 112490884 -69924358 - MER5A DNA MER1_type 0 189 1 208 259 189 45 chr6 112491956 112492104 -69923138 + MIR SINE MIR 19 186 -61 857 276 57 25 chr6 112493445 112493811 -69921431 + MLT1I LTR MaLR 31 408 -1 322 278 60 45 chr6 112493971 112494104 -69921138 + MIR SINE MIR 20 154 -108 21 0 0 0 chr6 112495063 112495084 -69920158 + AT_rich Low_complexity Low_complexity 1 21 0 267 157 0 0 chr6 112496919 112496970 -69918272 + (CA)n Simple_repeat Simple_repeat 2 52 0 2044 211 43 18 chr6 112497089 112497581 -69917661 - MLT1D LTR MaLR -1 504 1 21 36 0 0 chr6 112497995 112498023 -69917219 + AT_rich Low_complexity Low_complexity 1 28 0 247 310 42 78 chr6 112498753 112498895 -69916347 + MIR SINE MIR 41 177 -85 310 336 63 13 chr6 112499130 112499445 -69915797 + L1MC4a LINE L1 4734 5064 -1082 284 214 0 18 chr6 112499597 112499653 -69915589 + L2 LINE L2 2924 2978 -335 761 249 67 75 chr6 112499737 112500228 -69915014 + L1MC4a LINE L1 5315 5801 -2007 1174 209 106 0 chr6 112500231 112500485 -69914757 + AluJo SINE Alu 1 281 -31 186 43 0 0 chr6 112500486 112500509 -69914733 + (GAGAA)n Simple_repeat Simple_repeat 5 27 0 579 161 9 39 chr6 112500520 112500750 -69914492 + GA-rich Low_complexity Low_complexity 1 223 0 545 166 18 35 chr6 112500973 112501142 -69914100 + GA-rich Low_complexity Low_complexity 3 168 0 377 246 51 8 chr6 112501149 112501267 -69913975 + L1MC4a LINE L1 5803 5925 -1883 298 298 44 26 chr6 112501525 112501639 -69913603 + MIR SINE MIR 25 140 -68 315 0 0 0 chr6 112501981 112502016 -69913226 + (TG)n Simple_repeat Simple_repeat 1 35 0 927 181 112 0 chr6 112502370 112502558 -69912684 + MER2 DNA MER2_type 2 210 -135 301 248 75 75 chr6 112502804 112502842 -69912400 + MLT1F LTR MaLR 13 50 -540 4933 106 27 10 chr6 112502842 112503617 -69911625 + L1MA3 LINE L1 5516 6303 -2 301 248 75 75 chr6 112503617 112503711 -69911531 + MLT1F LTR MaLR 49 145 -445 * 750 224 18 0 chr6 112503710 112503875 -69911367 + MER45A DNA AcHobo 11 178 0 430 207 68 20 chr6 112503875 112504151 -69911091 + MLT1F LTR MaLR 141 530 -12 1472 122 143 8 chr6 112504548 112504785 -69910457 - AluSg1 SINE Alu -19 290 22 1609 69 0 5 chr6 112504785 112504987 -69910255 - AluY SINE Alu -110 201 1 547 294 83 9 chr6 112505200 112505418 -69909824 - MIR SINE MIR -10 252 19 1821 125 107 0 chr6 112506687 112506968 -69908274 - AluSq SINE Alu -2 311 1 199 365 72 0 chr6 112506995 112507162 -69908080 + MIR SINE MIR 84 262 0 28 0 0 0 chr6 112507411 112507439 -69907803 + AT_rich Low_complexity Low_complexity 1 28 0 934 123 0 36 chr6 112507837 112507975 -69907267 - FLAM_C SINE Alu -10 133 1 21 0 0 0 chr6 112508204 112508225 -69907017 + AT_rich Low_complexity Low_complexity 1 21 0 195 129 0 0 chr6 112509361 112509392 -69905850 + (A)n Simple_repeat Simple_repeat 1 31 0 200 271 0 106 chr6 112510432 112510517 -69904725 - MIR SINE MIR -43 219 144 182 345 0 0 chr6 112510563 112510618 -69904624 - MIR SINE MIR -121 87 33 1894 140 39 0 chr6 112512791 112513077 -69902165 + AluSx SINE Alu 1 297 -15 561 230 48 42 chr6 112515062 112515227 -69900015 + Charlie8 DNA MER1_type 53 218 -2199 8166 201 36 30 chr6 112515754 112516484 -69898758 + L1MB7 LINE L1 3244 3968 -2216 1269 153 82 82 chr6 112516484 112516849 -69898393 - MLT1A1 LTR MaLR 0 365 1 8166 201 36 30 chr6 112516849 112518280 -69896962 + L1MB7 LINE L1 3968 5425 -759 2199 154 43 31 chr6 112518280 112518701 -69896541 + MSTB LTR MaLR 1 426 0 8166 201 36 30 chr6 112518701 112519386 -69895856 + L1MB7 LINE L1 5425 6104 -80 1714 175 3 10 chr6 112520741 112521033 -69894209 - AluJo SINE Alu -22 290 1 198 288 117 63 chr6 112521103 112521214 -69894028 - MIR SINE MIR -34 228 112 871 232 33 117 chr6 112521309 112521449 -69893793 + MLT1A1 LTR MaLR 7 157 -208 2163 118 0 0 chr6 112521449 112521746 -69893496 + AluSg SINE Alu 1 297 -13 871 232 33 117 chr6 112521746 112521997 -69893245 + MLT1A1 LTR MaLR 157 365 0 724 294 81 9 chr6 112522352 112522573 -69892669 - MIR SINE MIR -5 257 21 297 338 36 39 chr6 112522661 112522969 -69892273 + L1ME LINE L1 4 310 -5809 324 320 61 44 chr6 112522991 112523106 -69892136 + L1ME LINE L1 466 578 -5541 411 242 46 119 chr6 112523106 112523586 -69891656 + MER65A LTR ERV1 1 445 0 324 320 61 44 chr6 112523586 112523814 -69891428 + L1ME LINE L1 578 815 -5304 477 259 108 11 chr6 112524001 112524186 -69891056 + LTR16C LTR ERVL 238 440 -51 650 209 122 38 chr6 112524252 112524539 -69890703 + L1ME LINE L1 898 1208 -4911 636 269 73 76 chr6 112524647 112524803 -69890439 + L1ME LINE L1 2130 2285 -3844 919 123 0 7 chr6 112524803 112524949 -69890293 + L1PA13 LINE L1 6014 6158 -5 636 269 73 76 chr6 112524949 112525367 -69889875 + L1ME LINE L1 2285 2704 -3425 2178 109 0 20 chr6 112525367 112525671 -69889571 + AluSg SINE Alu 1 298 -12 636 269 73 76 chr6 112525671 112525752 -69889490 + L1ME LINE L1 2704 2784 -3345 * 649 255 119 60 chr6 112525748 112526085 -69889157 + L1ME LINE L1 5322 5690 -455 2336 100 3 0 chr6 112526085 112526396 -69888846 - AluSp SINE Alu -1 312 1 649 255 119 60 chr6 112526396 112526477 -69888765 + L1ME LINE L1 5690 5765 -380 500 317 86 27 chr6 112526486 112527033 -69888209 - L1ME LINE L1 -487 5675 5093 612 294 138 26 chr6 112527269 112527887 -69887355 - L1ME LINE L1 -1910 4236 3550 540 240 265 12 chr6 112527910 112528310 -69886932 + L1M4 LINE L1 4618 5118 -1028 850 193 22 48 chr6 112528311 112528539 -69886703 + L1MA10 LINE L1 5989 6210 -124 249 108 0 0 chr6 112528743 112528780 -69886462 + (T)n Simple_repeat Simple_repeat 1 37 0 2342 72 7 3 chr6 112528809 112529101 -69886141 - AluY SINE Alu -18 293 1 7966 138 42 12 chr6 112529249 112530564 -69884678 + Tigger4(Zombi) DNA MER2_type 205 1558 -1173 9725 127 10 1 chr6 112530750 112532315 -69882927 - L1P LINE L1 -1558 4588 3010 26 0 0 0 chr6 112532825 112532851 -69882391 + AT_rich Low_complexity Low_complexity 1 26 0 816 170 0 7 chr6 112534270 112534411 -69880831 + FLAM_C SINE Alu 1 140 -3 423 294 25 25 chr6 112534711 112534830 -69880412 - MIR SINE MIR -60 148 30 714 249 105 58 chr6 112535984 112536326 -69878916 + L2 LINE L2 2269 2626 -688 376 244 24 12 chr6 112536340 112536422 -69878820 + MIR SINE MIR 2 84 -178 1225 187 85 61 chr6 112536422 112536785 -69878457 - MER76 LTR ERV 0 688 317 1881 109 21 0 chr6 112536809 112537093 -69878149 - AluSx SINE Alu -22 290 1 441 143 14 0 chr6 112537650 112537720 -69877522 + U6 snRNA snRNA 1 71 -36 445 275 181 0 chr6 112537722 112537882 -69877360 + MIR SINE MIR 63 251 -11 196 242 167 8 chr6 112537904 112538024 -69877218 + MIR SINE MIR 123 261 -1 365 345 58 68 chr6 112538067 112538600 -69876642 + L2 LINE L2 2411 2938 -376 26 0 0 0 chr6 112539760 112539786 -69875456 + AT_rich Low_complexity Low_complexity 1 26 0 1549 198 0 7 chr6 112539864 112540137 -69875105 - AluJo SINE Alu -14 298 28 362 215 28 117 chr6 112540557 112540680 -69874562 + L1ME4a LINE L1 5710 5802 -319 639 164 0 41 chr6 112540680 112540802 -69874440 + FLAM_A SINE Alu 1 117 -16 362 215 28 117 chr6 112540802 112540925 -69874317 + L1ME4a LINE L1 5802 5934 -187 213 226 0 0 chr6 112541363 112541416 -69873826 + (TA)n Simple_repeat Simple_repeat 1 53 0 642 297 70 23 chr6 112541591 112541934 -69873308 - L1MC4a LINE L1 -1908 5900 5542 270 250 15 0 chr6 112541970 112542038 -69873204 - Charlie8 DNA MER1_type -8 2409 2341 1874 100 48 15 chr6 112542064 112542335 -69872907 + AluSx SINE Alu 26 305 -7 558 304 70 37 chr6 112542370 112542643 -69872599 - Charlie8 DNA MER1_type -2132 285 4 306 253 0 0 chr6 112543215 112543314 -69871928 + (TA)n Simple_repeat Simple_repeat 1 99 0 245 261 0 22 chr6 112543314 112543406 -69871836 + L1MC4 LINE L1 6614 6703 -1339 528 267 0 0 chr6 112543411 112543591 -69871651 + (TA)n Simple_repeat Simple_repeat 1 180 0 219 265 0 0 chr6 112543594 112543643 -69871599 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 381 306 0 0 chr6 112543643 112543823 -69871419 + (CATA)n Simple_repeat Simple_repeat 1 180 0 303 307 23 0 chr6 112543826 112543914 -69871328 + L1MC4 LINE L1 6614 6703 -1339 225 178 0 0 chr6 112543918 112543963 -69871279 + (TA)n Simple_repeat Simple_repeat 1 45 0 1358 189 91 0 chr6 112543963 112544227 -69871015 - AluJo SINE Alu -22 290 3 23 33 0 0 chr6 112544958 112544988 -69870254 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr6 112545234 112545267 -69869975 + AT_rich Low_complexity Low_complexity 1 33 0 348 315 105 7 chr6 112546820 112546963 -69868279 + L2 LINE L2 3116 3272 0 1249 238 10 3 chr6 112547530 112547829 -69867413 + L1MB3 LINE L1 4674 4974 -1172 13726 26 0 0 chr6 112547930 112550321 -69864921 + L1PA2 LINE L1 3763 6154 -1 241 163 153 20 chr6 112550377 112550475 -69864767 + L1ME4a LINE L1 5964 6074 -47 35 24 0 0 chr6 112550819 112550861 -69864381 + AT_rich Low_complexity Low_complexity 1 42 0 2244 79 21 3 chr6 112552447 112552737 -69862505 - AluY SINE Alu -16 295 1 247 300 0 0 chr6 112552855 112552905 -69862337 + Charlie1 DNA MER1_type 21 70 -2691 * 1078 176 49 29 chr6 112552904 112553148 -69862094 + Charlie1 DNA MER1_type 2343 2591 -170 4161 157 76 31 chr6 112553269 112554217 -69861025 + L1MB3 LINE L1 5038 6173 -10 1988 114 54 7 chr6 112555074 112555372 -69859870 + AluSx SINE Alu 1 312 0 1961 125 37 3 chr6 112555374 112555670 -69859572 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr6 112555916 112555944 -69859298 + AT_rich Low_complexity Low_complexity 1 28 0 309 262 176 47 chr6 112556386 112556642 -69858600 + L1ME4a LINE L1 4877 5165 -981 2340 69 3 13 chr6 112556850 112557154 -69858088 + AluY SINE Alu 1 301 -10 307 266 62 40 chr6 112557468 112557645 -69857597 + L1ME4a LINE L1 5925 6105 -16 1844 144 11 0 chr6 112557781 112558065 -69857177 - AluJb SINE Alu -5 307 21 432 200 71 52 chr6 112558330 112558485 -69856757 + L1ME4a LINE L1 5959 6116 -5 2200 90 29 26 chr6 112558505 112558816 -69856426 + AluSx SINE Alu 1 312 0 23959 43 45 0 chr6 112558819 112561844 -69853398 + L1P LINE L1 1 3161 -2985 2643 93 8 8 chr6 112562086 112562463 -69852779 + LTR3b LTR ERVK 1 377 -123 2504 53 3 0 chr6 112562463 112562762 -69852480 + AluY SINE Alu 2 301 -10 282 302 208 13 chr6 112563555 112563714 -69851528 + MIR SINE MIR 50 239 -23 186 256 110 24 chr6 112563863 112563945 -69851297 - MIR SINE MIR 0 262 174 204 313 167 0 chr6 112564000 112564096 -69851146 + L2 LINE L2 3190 3301 -12 1994 107 38 24 chr6 112564097 112564388 -69850854 + AluSx SINE Alu 1 295 -17 1645 179 13 32 chr6 112565572 112565885 -69849357 - AluJb SINE Alu -5 307 1 21 0 0 0 chr6 112566964 112566985 -69848257 + AT_rich Low_complexity Low_complexity 1 21 0 2344 109 3 0 chr6 112567262 112567574 -69847668 + AluSq SINE Alu 1 313 0 196 321 0 18 chr6 112567667 112567723 -69847519 - MIR SINE MIR -137 71 17 371 325 82 5 chr6 112568577 112568662 -69846580 - MIR SINE MIR -13 249 172 418 279 159 39 chr6 112568662 112569021 -69846221 + MER93a LTR ERV1 1 402 0 371 325 82 5 chr6 112569021 112569141 -69846101 - MIR SINE MIR -90 172 28 34041 98 19 12 chr6 112569238 112575343 -69839899 + L1PA6 LINE L1 11 6154 0 1553 201 21 21 chr6 112575650 112575938 -69839304 + AluJo SINE Alu 1 288 -24 31 58 0 0 chr6 112575939 112575991 -69839251 + AT_rich Low_complexity Low_complexity 1 52 0 2460 85 0 3 chr6 112576488 112576793 -69838449 - AluSc SINE Alu -5 304 1 2105 120 3 7 chr6 112577376 112577677 -69837565 + AluSx SINE Alu 1 300 -12 323 339 90 37 chr6 112577783 112577972 -69837270 - MIR SINE MIR -13 249 51 1377 319 92 45 chr6 112578588 112579579 -69835663 - L2 LINE L2 0 3272 2243 295 288 50 0 chr6 112580123 112580203 -69835039 + L2 LINE L2 3230 3313 0 300 148 0 0 chr6 112580695 112580756 -69834486 + (TA)n Simple_repeat Simple_repeat 1 61 0 649 187 0 29 chr6 112581134 112581273 -69833969 + MER3 DNA MER1_type 65 199 -10 29 0 0 0 chr6 112581368 112581397 -69833845 + AT_rich Low_complexity Low_complexity 1 29 0 1169 214 8 24 chr6 112581680 112581932 -69833310 + AluJo SINE Alu 49 296 -16 1089 257 83 76 chr6 112581961 112582674 -69832568 + HAL1 LINE L1 21 738 -1769 786 250 0 6 chr6 112582679 112582835 -69832407 + AluJo SINE Alu 3 157 -155 826 233 69 5 chr6 112582927 112583129 -69832113 + MER20 DNA MER1_type 1 215 -4 1547 271 114 26 chr6 112583136 112584106 -69831136 + HAL1 LINE L1 750 1805 -702 1150 182 227 34 chr6 112584115 112584472 -69830770 + MSTB LTR MaLR 1 426 0 9348 128 18 51 chr6 112584474 112584842 -69830400 + MSTB-int LTR MaLR 3 382 -1198 1873 152 21 3 chr6 112584842 112585132 -69830110 - AluSx SINE Alu -15 297 3 9348 128 18 51 chr6 112585132 112585262 -69829980 + MSTB-int LTR MaLR 382 515 -1065 2285 109 0 0 chr6 112585262 112585565 -69829677 + AluSq SINE Alu 1 303 -10 9348 128 18 51 chr6 112585565 112586697 -69828545 + MSTB-int LTR MaLR 515 1580 0 716 155 230 30 chr6 112586697 112586897 -69828345 + MSTB LTR MaLR 1 240 -188 649 244 115 26 chr6 112587625 112587859 -69827383 + MIR SINE MIR 8 262 0 2483 246 99 9 chr6 112587999 112588116 -69827126 + L1ME3A LINE L1 5004 5109 -1061 181 0 69 0 chr6 112588116 112588145 -69827097 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2483 246 99 9 chr6 112588145 112589071 -69826171 + L1ME3A LINE L1 5109 6150 -20 21 36 0 0 chr6 112589906 112589934 -69825308 + AT_rich Low_complexity Low_complexity 1 28 0 1183 249 56 117 chr6 112590625 112591231 -69824011 + L2 LINE L2 2402 2970 -344 307 276 86 17 chr6 112591231 112591347 -69823895 + L2 LINE L2 3190 3313 0 935 166 0 19 chr6 112591518 112591675 -69823567 + AluJo SINE Alu 140 293 -19 271 219 0 0 chr6 112591960 112592024 -69823218 + A-rich Low_complexity Low_complexity 1 64 0 34 0 0 0 chr6 112592492 112592526 -69822716 + AT_rich Low_complexity Low_complexity 1 34 0 28 29 0 0 chr6 112592764 112592799 -69822443 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr6 112592822 112592846 -69822396 + AT_rich Low_complexity Low_complexity 1 24 0 10463 205 8 31 chr6 112593267 112596163 -69819079 + L1P3 LINE L1 831 3654 -2807 2130 132 0 3 chr6 112596164 112596459 -69818783 + AluSg SINE Alu 2 295 -15 189 0 0 0 chr6 112596459 112596480 -69818762 + (TA)n Simple_repeat Simple_repeat 2 22 0 33248 105 12 11 chr6 112596609 112602741 -69812501 + L1PA7 LINE L1 11 6151 -3 2447 85 0 3 chr6 112602741 112603048 -69812194 + AluY SINE Alu 1 306 -5 5121 123 60 26 chr6 112603336 112603801 -69811441 - Tigger4(Zombi) DNA MER2_type 0 2731 2283 2088 143 10 0 chr6 112603801 112604101 -69811141 + AluSx SINE Alu 1 303 -9 5121 123 60 26 chr6 112604101 112604112 -69811130 - Tigger4(Zombi) DNA MER2_type -448 2283 2274 2333 100 0 10 chr6 112604112 112604411 -69810831 - AluSx SINE Alu -16 296 1 5121 123 60 26 chr6 112604411 112605006 -69810236 - Tigger4(Zombi) DNA MER2_type -457 2274 1534 225 203 136 0 chr6 112605482 112605541 -69809701 - MIR SINE MIR -77 185 119 2185 106 0 0 chr6 112605915 112606218 -69809024 + AluSx SINE Alu 1 303 0 21 36 0 0 chr6 112607559 112607587 -69807655 + AT_rich Low_complexity Low_complexity 1 28 0 249 159 0 0 chr6 112607864 112607908 -69807334 + (CA)n Simple_repeat Simple_repeat 1 44 0 1305 157 34 15 chr6 112608248 112608515 -69806727 + L1MB4 LINE L1 5909 6180 0 219 288 61 0 chr6 112608643 112608709 -69806533 - L2 LINE L2 0 3272 3203 23 86 0 0 chr6 112609194 112609252 -69805990 + AT_rich Low_complexity Low_complexity 1 58 0 215 303 84 25 chr6 112609324 112609443 -69805799 - MIR SINE MIR 0 262 137 2382 14 7 7 chr6 112609462 112609747 -69805495 - AluYa5 SINE Alu -26 285 1 2248 98 0 3 chr6 112609751 112610037 -69805205 - AluSc SINE Alu -20 289 5 222 338 66 15 chr6 112610044 112610180 -69805062 - MIR SINE MIR -114 148 6 1135 154 29 134 chr6 112610417 112610761 -69804481 + AluYb8 SINE Alu 1 308 0 405 324 93 7 chr6 112611887 112612026 -69803216 + MIR SINE MIR 38 188 -74 21 57 0 0 chr6 112612236 112612271 -69802971 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr6 112612486 112612518 -69802724 + AT_rich Low_complexity Low_complexity 1 32 0 2250 95 3 0 chr6 112613131 112613416 -69801826 - AluSx SINE Alu -26 286 1 1625 152 10 55 chr6 112613870 112614179 -69801063 + AluJo SINE Alu 1 295 -17 578 281 48 6 chr6 112615031 112615198 -69800044 + MIR SINE MIR 23 196 -66 186 118 0 0 chr6 112615207 112615241 -69800001 + (TAA)n Simple_repeat Simple_repeat 3 36 0 446 195 70 23 chr6 112615243 112615371 -69799871 - MIR SINE MIR -5 257 124 203 147 0 0 chr6 112615636 112615670 -69799572 + (CA)n Simple_repeat Simple_repeat 1 34 0 1629 220 151 43 chr6 112615936 112616537 -69798705 - L1MC4 LINE L1 -138 7904 7239 1618 166 83 0 chr6 112616538 112616840 -69798402 - L1MC4 LINE L1 -957 7085 6759 424 224 210 0 chr6 112616839 112616982 -69798260 - L1MC4a LINE L1 -1193 6615 6443 * 449 19 0 269 chr6 112617350 112617458 -69797784 - MADE1 DNA Mariner 0 80 2 1745 184 16 0 chr6 112617565 112617869 -69797373 + AluJb SINE Alu 3 311 -1 361 289 211 0 chr6 112617875 112618069 -69797173 + MIR SINE MIR 28 262 0 499 271 188 10 chr6 112618763 112618955 -69796287 - MIR SINE MIR -3 259 34 492 174 94 29 chr6 112619012 112619150 -69796092 + MER103 DNA DNA 9 155 -11 219 280 0 0 chr6 112619249 112619299 -69795943 + L2 LINE L2 3218 3267 -5 2209 105 0 20 chr6 112621410 112621715 -69793527 + AluSx SINE Alu 1 299 -13 911 226 0 0 chr6 112621813 112621990 -69793252 + AluJb SINE Alu 135 311 -1 353 273 80 34 chr6 112622207 112622383 -69792859 - L3b LINE CR1 -76 1507 1324 26 0 0 0 chr6 112623481 112623507 -69791735 + AT_rich Low_complexity Low_complexity 1 26 0 1005 134 0 7 chr6 112625828 112625977 -69789265 + AluJo SINE Alu 1 148 -164 435 243 169 41 chr6 112676111 112676308 -69738934 + L1MC5 LINE L1 7661 7896 -65 2429 75 3 0 chr6 112676308 112676603 -69738639 - AluY SINE Alu -15 296 1 435 243 169 41 chr6 112676603 112676648 -69738594 + L1MC5 LINE L1 7896 7934 -27 248 184 51 92 chr6 112676773 112676871 -69738371 - L1MC4a LINE L1 -1633 6175 6082 305 297 10 0 chr6 112676953 112677054 -69738188 - L1ME LINE L1 -296 5825 5724 2108 130 0 0 chr6 112677134 112677427 -69737815 + AluSq SINE Alu 1 293 -20 579 340 136 52 chr6 112677686 112678377 -69736865 + L2 LINE L2 2208 2956 -358 2239 125 0 0 chr6 112678387 112678684 -69736558 - AluSx SINE Alu -15 297 1 319 241 13 13 chr6 112678796 112678875 -69736367 - AluJ/FLAM SINE Alu -223 79 1 22 0 0 0 chr6 112679148 112679170 -69736072 + AT_rich Low_complexity Low_complexity 1 22 0 1916 125 31 7 chr6 112679255 112679544 -69735698 - AluSg SINE Alu -14 296 1 293 338 38 53 chr6 112679580 112679843 -69735399 + L3 LINE CR1 514 772 -805 2327 100 3 0 chr6 112679858 112680157 -69735085 + AluSq SINE Alu 1 300 -13 2230 92 0 26 chr6 112680169 112680475 -69734767 + AluSq SINE Alu 1 298 -15 1968 109 14 14 chr6 112680492 112680785 -69734457 + AluSq SINE Alu 8 300 -13 1174 88 69 0 chr6 112680788 112680948 -69734294 + AluSc SINE Alu 123 293 -16 1859 160 7 0 chr6 112681701 112681989 -69733253 - AluSx SINE Alu -22 290 1 509 160 0 32 chr6 112682560 112682654 -69732588 + AluSg/x SINE Alu 217 307 -5 2332 100 0 0 chr6 112682659 112682958 -69732284 + AluSg SINE Alu 1 299 -11 2386 94 0 3 chr6 112682967 112683274 -69731968 + AluSq SINE Alu 1 306 -7 327 300 72 47 chr6 112683415 112683602 -69731640 - MIR SINE MIR 0 262 3 469 212 0 0 chr6 112683970 112684055 -69731187 + FLAM_A SINE Alu 5 89 -53 1500 180 97 66 chr6 112684555 112685129 -69730113 + LTR49 LTR ERV1 2 768 -19 220 282 105 8 chr6 112685315 112685439 -69729803 + MIR SINE MIR 127 262 0 2286 92 0 0 chr6 112685457 112685741 -69729501 - AluSc SINE Alu -25 284 1 27 0 0 0 chr6 112685999 112686026 -69729216 + AT_rich Low_complexity Low_complexity 1 27 0 1690 172 10 23 chr6 112686069 112686371 -69728871 - AluJo SINE Alu -12 300 3 2093 92 0 49 chr6 112686621 112686926 -69728316 - AluSq SINE Alu -23 290 1 186 325 154 26 chr6 112687039 112687156 -69728086 + MIR3 SINE MIR 15 146 -62 * 204 125 0 0 chr6 112687131 112687163 -69728079 + MIR SINE MIR 121 152 -110 393 147 118 20 chr6 112687565 112687665 -69727577 + Charlie7 DNA MER1_type 2443 2552 -60 562 317 41 12 chr6 112687665 112687908 -69727334 + MER34 LTR ERV1 1 250 -292 23 33 0 0 chr6 112688181 112688211 -69727031 + AT_rich Low_complexity Low_complexity 1 30 0 396 215 78 14 chr6 112688529 112688674 -69726568 - L1MC5 LINE L1 -20 8022 7806 1184 239 134 93 chr6 112688752 112689438 -69725804 - L1MC4a LINE L1 -1642 6166 5453 2196 90 3 0 chr6 112689478 112689766 -69725476 - AluSx SINE Alu -23 289 1 1064 193 82 99 chr6 112690063 112690416 -69724826 + MLT1B LTR MaLR 1 347 -43 617 191 0 0 chr6 112690437 112690542 -69724700 - AluJb SINE Alu -206 106 2 1221 183 54 20 chr6 112690557 112690852 -69724390 - AluJb SINE Alu -7 305 1 703 233 38 0 chr6 112690871 112691030 -69724212 - FRAM SINE Alu -1 165 1 1377 134 107 0 chr6 112691035 112691297 -69723945 - AluSq SINE Alu -13 290 1 182 324 29 0 chr6 112691534 112691602 -69723640 - L2 LINE L2 0 3313 3244 1065 219 12 109 chr6 112691664 112691984 -69723258 + AluJo SINE Alu 1 289 -13 1920 159 3 13 chr6 112692091 112692406 -69722836 + AluSx SINE Alu 1 312 0 491 289 105 21 chr6 112693377 112693567 -69721675 + L2 LINE L2 3106 3311 -2 900 163 34 0 chr6 112693777 112693924 -69721318 - MSTD LTR MaLR -4 392 241 485 270 111 107 chr6 112694082 112694615 -69720627 - LTR67 LTR ERVL -21 536 2 240 346 99 40 chr6 112694626 112695080 -69720162 + L2 LINE L2 2381 2861 -453 251 331 29 22 chr6 112695116 112695255 -69719987 + L2 LINE L2 2895 3034 -238 3012 169 224 9 chr6 112695282 112696033 -69719209 + MER52A LTR ERV1 1 912 -843 241 174 22 0 chr6 112696125 112696171 -69719071 - LTR67 LTR ERVL -509 48 2 237 255 142 19 chr6 112696182 112696288 -69718954 + L2 LINE L2 2381 2499 -815 600 178 10 1 chr6 112696416 112696534 -69718708 + MER52A LTR ERV1 908 1097 -658 2334 103 3 6 chr6 112696605 112696917 -69718325 + AluSq SINE Alu 1 311 -2 2331 169 97 12 chr6 112697557 112697585 -69717657 + LOR1b LTR ERV1 1 25 -436 2208 114 0 10 chr6 112697585 112697892 -69717350 - AluSc SINE Alu 0 309 6 2331 169 97 12 chr6 112697892 112698288 -69716954 + LOR1b LTR ERV1 25 461 0 841 240 64 15 chr6 112699748 112699952 -69715290 - MER58C DNA MER1_type -1 214 1 262 234 28 19 chr6 112700323 112700430 -69714812 + (TA)n Simple_repeat Simple_repeat 2 109 0 993 124 0 14 chr6 112700482 112700627 -69714615 - FLAM_C SINE Alu 0 143 1 898 169 0 0 chr6 112701422 112701564 -69713678 + AluJb SINE Alu 155 296 -16 238 293 121 10 chr6 112701663 112701762 -69713480 + MIR SINE MIR 33 142 -66 420 130 0 0 chr6 112701841 112701910 -69713332 + (TC)n Simple_repeat Simple_repeat 2 70 0 1840 130 4 4 chr6 112701911 112702180 -69713062 - AluSq SINE Alu -44 269 1 30 27 0 0 chr6 112702318 112702355 -69712887 + AT_rich Low_complexity Low_complexity 1 37 0 1886 167 0 7 chr6 112702499 112702798 -69712444 + AluJo SINE Alu 2 298 -14 3820 240 77 12 chr6 112702798 112703009 -69712233 - L1MEc LINE L1 -5223 1173 977 2068 120 3 0 chr6 112703009 112703325 -69711917 - AluSp SINE Alu 0 317 1 3820 240 77 12 chr6 112703325 112704179 -69711063 - L1MEc LINE L1 -5419 977 38 701 232 13 0 chr6 112704181 112704332 -69710910 + MER63 DNA MER1_type 910 1062 0 1691 190 17 14 chr6 112704567 112704857 -69710385 - AluSq SINE Alu -20 293 3 250 286 109 42 chr6 112705209 112705328 -69709914 + MLT1H LTR MaLR 93 219 -330 244 313 107 23 chr6 112705596 112705727 -69709515 - MIR SINE MIR -55 207 66 303 157 12 145 chr6 112706005 112706088 -69709154 + L2 LINE L2 3242 3313 0 1368 139 30 148 chr6 112706375 112706712 -69708530 - AluJo SINE Alu -5 297 1 22 70 0 0 chr6 112707257 112707300 -69707942 + AT_rich Low_complexity Low_complexity 1 43 0 2374 71 0 0 chr6 112707322 112707644 -69707598 + AluSc SINE Alu 1 322 0 21 0 0 0 chr6 112708497 112708518 -69706724 + AT_rich Low_complexity Low_complexity 1 21 0 359 260 20 0 chr6 112708688 112708788 -69706454 - HAL1b LINE L1 -563 785 684 719 224 0 0 chr6 112709476 112709601 -69705641 - FLAM_A SINE Alu -8 125 1 1007 180 23 0 chr6 112710356 112710528 -69704714 + AluJb SINE Alu 137 312 0 5268 140 29 62 chr6 112710586 112710648 -69704594 - L1MC1 LINE L1 0 6333 6270 2383 99 0 0 chr6 112710648 112710950 -69704292 + AluSx SINE Alu 1 302 -10 5268 140 29 62 chr6 112710950 112711311 -69703931 - L1MC1 LINE L1 -63 6270 5898 363 23 0 0 chr6 112711311 112711355 -69703887 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 5268 140 29 62 chr6 112711355 112711973 -69703269 - L1MC1 LINE L1 -435 5898 5326 963 44 0 0 chr6 112711974 112712088 -69703154 - AluY SINE Alu -17 294 181 1165 42 7 7 chr6 112712326 112712468 -69702774 - AluY SINE Alu -169 142 1 1877 131 34 17 chr6 112712470 112712761 -69702481 - AluSx SINE Alu -16 296 1 3845 211 18 37 chr6 112712763 112713105 -69702137 - L1MC1 LINE L1 -820 5326 4979 2225 120 3 0 chr6 112713105 112713405 -69701837 - AluSq SINE Alu -12 301 1 3845 211 18 37 chr6 112713405 112713642 -69701600 - L1MC1 LINE L1 -1167 4979 4739 1615 189 33 7 chr6 112713642 112713944 -69701298 + AluJb SINE Alu 3 312 0 3845 211 18 37 chr6 112713944 112714697 -69700545 - L1MC1 LINE L1 -1407 4739 3887 1321 95 11 32 chr6 112714698 112714869 -69700373 - AluSg/x SINE Alu -9 303 135 2297 84 0 32 chr6 112714869 112715179 -69700063 - AluY SINE Alu -10 301 2 1321 95 11 32 chr6 112715179 112715197 -69700045 - AluSg/x SINE Alu -177 135 118 1972 231 50 17 chr6 112715197 112715798 -69699444 - L1MC1 LINE L1 -2274 3872 3252 408 65 0 0 chr6 112715802 112715864 -69699378 - Alu SINE Alu -2 310 249 710 204 14 7 chr6 112716039 112716246 -69698996 + AluSc SINE Alu 133 340 0 593 190 123 0 chr6 112716249 112716460 -69698782 - L1MC1 LINE L1 -2940 3206 2970 27 0 0 0 chr6 112716482 112716509 -69698733 + AT_rich Low_complexity Low_complexity 1 27 0 15587 133 28 6 chr6 112716582 112719120 -69696122 + L1M1 LINE L1 15 2606 -4959 2204 111 3 3 chr6 112719555 112719861 -69695381 + AluSq SINE Alu 1 306 -7 21 0 0 0 chr6 112719921 112719942 -69695300 + AT_rich Low_complexity Low_complexity 1 21 0 412 227 146 5 chr6 112720627 112720812 -69694430 - MER112 DNA MER1_type -12 248 38 2317 101 3 0 chr6 112720829 112721127 -69694115 - AluY SINE Alu -12 299 1 601 169 68 0 chr6 112721187 112721305 -69693937 + MIR SINE MIR 99 224 -38 396 217 25 96 chr6 112721488 112721769 -69693473 - L1MC5 LINE L1 -214 7747 7487 1847 201 40 9 chr6 112721769 112722198 -69693044 - L1MD3 LINE L1 0 7995 7554 452 97 272 53 chr6 112722198 112722312 -69692930 + MER44D DNA MER2_type 1 409 -200 1298 215 168 6 chr6 112722549 112722888 -69692354 - MSTD LTR MaLR -2 394 1 25 75 0 0 chr6 112723018 112723071 -69692171 + AT_rich Low_complexity Low_complexity 1 53 0 294 125 0 0 chr6 112723633 112723681 -69691561 + (CA)n Simple_repeat Simple_repeat 1 48 0 194 327 109 0 chr6 112723694 112723795 -69691447 + MIR3 SINE MIR 87 198 -10 24 32 0 0 chr6 112724126 112724157 -69691085 + AT_rich Low_complexity Low_complexity 1 31 0 2191 89 0 4 chr6 112724495 112724795 -69690447 + AluSc SINE Alu 1 299 0 2314 107 0 0 chr6 112725626 112725926 -69689316 + AluSx SINE Alu 1 300 -12 2347 70 3 7 chr6 112725926 112726224 -69689018 + AluY SINE Alu 1 297 -14 998 172 0 35 chr6 112726233 112726407 -69688835 + AluJo SINE Alu 1 168 -144 792 247 108 25 chr6 112726521 112726845 -69688397 + HAL1 LINE L1 461 811 -1696 2198 252 97 34 chr6 112726852 112727952 -69687290 + HAL1 LINE L1 850 2019 -488 2841 241 65 26 chr6 112727967 112728024 -69687218 + L1MD2 LINE L1 4140 4193 -1953 2206 117 0 0 chr6 112728024 112728324 -69686918 + AluSx SINE Alu 1 300 -12 2841 241 65 26 chr6 112728324 112729276 -69685966 + L1MD2 LINE L1 4193 5189 -957 * 4878 173 13 50 chr6 112729269 112730843 -69684399 + L1M1 LINE L1 4096 5577 -727 2251 205 70 72 chr6 112730839 112731381 -69683861 + L1MD2 LINE L1 5625 6167 -192 * 2342 112 0 0 chr6 112731381 112731685 -69683557 + AluSx SINE Alu 1 304 -8 2251 205 70 72 chr6 112731685 112731854 -69683388 + L1MD2 LINE L1 6167 6335 -24 864 245 59 57 chr6 112731859 112732204 -69683038 + HAL1 LINE L1 2030 2378 -129 2227 99 10 17 chr6 112732204 112732339 -69682903 + AluSq SINE Alu 1 135 -178 2290 87 3 0 chr6 112732339 112732627 -69682615 + AluSp SINE Alu 1 289 -24 2227 99 10 17 chr6 112732627 112732793 -69682449 + AluSq SINE Alu 135 300 -13 864 245 59 57 chr6 112732793 112732924 -69682318 + HAL1 LINE L1 2378 2507 0 1435 184 8 16 chr6 112733716 112733972 -69681270 + AluJo SINE Alu 37 290 -22 1045 83 15 0 chr6 112733981 112734114 -69681128 + AluSq/x SINE Alu 1 135 -178 2423 53 3 31 chr6 112735066 112735384 -69679858 + AluY SINE Alu 1 309 -2 2771 104 52 166 chr6 112735439 112736150 -69679092 + MER51A LTR ERV1 1 630 -4 1742 175 7 0 chr6 112736232 112736518 -69678724 + MER1B DNA MER1_type 52 339 0 562 253 28 51 chr6 112736524 112736702 -69678540 - L2 LINE L2 -34 3279 3106 28 0 0 0 chr6 112737953 112737981 -69677261 + AT_rich Low_complexity Low_complexity 1 28 0 1177 163 128 69 chr6 112740071 112740360 -69674882 - 7SLRNA srpRNA srpRNA -2 318 13 2089 134 0 0 chr6 112740615 112740922 -69674320 + AluSx SINE Alu 1 307 0 2334 88 7 0 chr6 112740924 112741232 -69674010 + AluY SINE Alu 1 310 -1 583 121 57 0 chr6 112741232 112741372 -69673870 + GA-rich Low_complexity Low_complexity 3 150 0 1657 181 20 10 chr6 112741682 112742003 -69673239 - AluJo SINE Alu 0 312 1 1044 154 0 0 chr6 112742065 112742221 -69673021 + FRAM SINE Alu 1 156 -10 647 174 0 0 chr6 112742700 112742798 -69672444 - FLAM_A SINE Alu -20 122 25 257 313 48 12 chr6 112744429 112744512 -69670730 + L2 LINE L2 3202 3287 -26 1515 106 25 30 chr6 112745170 112745407 -69669835 + AluSx SINE Alu 1 236 -76 21 0 0 0 chr6 112745547 112745568 -69669674 + AT_rich Low_complexity Low_complexity 1 21 0 2527 74 0 0 chr6 112746648 112746958 -69668284 - AluY SINE Alu -1 310 1 209 289 254 0 chr6 112747221 112747335 -69667907 + MIR3 SINE MIR 3 145 -63 5631 45 0 4 chr6 112747576 112748311 -69666931 - L1PA5 LINE L1 -2006 4140 3409 9757 47 4 2 chr6 112748313 112750351 -69664891 + L1PA5 LINE L1 4125 6177 0 444 278 15 23 chr6 112750461 112750594 -69664648 + MIR SINE MIR 36 167 -95 2222 112 0 3 chr6 112750667 112750962 -69664280 - AluSc SINE Alu -1 308 15 1690 194 20 3 chr6 112751175 112751348 -69663894 - AluJo SINE Alu -8 304 122 189 0 0 0 chr6 112751348 112751369 -69663873 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1690 194 20 3 chr6 112751369 112751494 -69663748 - AluJo SINE Alu -190 122 1 236 128 0 21 chr6 112752780 112752827 -69662415 - L1PA16 LINE L1 -45 6121 6076 275 85 21 0 chr6 112752981 112753028 -69662214 + (TC)n Simple_repeat Simple_repeat 2 49 0 426 278 9 0 chr6 112753031 112753146 -69662096 + L1M4 LINE L1 4029 4144 -2002 * 802 257 89 20 chr6 112753144 112753502 -69661740 + L1M4 LINE L1 4909 5291 -855 2313 117 0 0 chr6 112754448 112754756 -69660486 + AluSx SINE Alu 1 308 -4 854 167 44 49 chr6 112755194 112755398 -69659844 + MER3 DNA MER1_type 6 208 -1 305 267 173 7 chr6 112755693 112755843 -69659399 + L1MCa LINE L1 2271 2445 -3981 1408 195 62 3 chr6 112755882 112756236 -69659006 + MER95 LTR ERV 1 375 -56 1081 154 78 139 chr6 112756368 112756713 -69658529 - MLT2D LTR ERVL -8 406 83 476 285 156 40 chr6 112756746 112757093 -69658149 + L1MCa LINE L1 2615 3001 -3425 405 318 56 47 chr6 112757599 112757828 -69657414 + MLT1I LTR MaLR 86 320 -89 2252 107 0 7 chr6 112757828 112758126 -69657116 + AluSx SINE Alu 1 296 -16 405 318 56 47 chr6 112758126 112758217 -69657025 + MLT1I LTR MaLR 320 409 0 24 0 0 0 chr6 112758339 112758363 -69656879 + AT_rich Low_complexity Low_complexity 1 24 0 312 253 98 58 chr6 112758676 112758901 -69656341 + MLT1H LTR MaLR 206 439 -110 2236 102 0 10 chr6 112759082 112759386 -69655856 - AluSx SINE Alu -7 305 5 761 138 0 82 chr6 112760049 112760208 -69655034 + FRAM SINE Alu 23 168 -8 349 341 36 0 chr6 112760275 112760413 -69654829 - MIR SINE MIR -3 259 117 322 310 9 18 chr6 112760424 112760537 -69654705 + MER5A DNA MER1_type 4 115 -74 2275 76 3 23 chr6 112760571 112760872 -69654370 + AluSc SINE Alu 1 295 -14 1823 128 59 3 chr6 112760894 112761182 -69654060 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr6 112761418 112761441 -69653801 + AT_rich Low_complexity Low_complexity 1 23 0 208 243 14 14 chr6 112761855 112761925 -69653317 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 257 290 178 0 chr6 112762583 112762690 -69652552 - MIR SINE MIR -1 261 136 1274 151 5 10 chr6 112762690 112762896 -69652346 + AluJb SINE Alu 87 291 -21 184 355 0 84 chr6 112762899 112763006 -69652236 - MIR SINE MIR -118 144 47 2182 87 35 7 chr6 112763923 112764212 -69651030 + AluSc SINE Alu 1 297 -12 273 180 0 0 chr6 112764609 112764659 -69650583 - AluJ/FLAM SINE Alu -216 86 37 2779 186 16 14 chr6 112764670 112765244 -69649998 - L1MDb LINE L1 -5177 1232 658 1165 285 20 7 chr6 112765312 112765617 -69649625 - L1MDb LINE L1 -6094 315 7 863 176 0 29 chr6 112765627 112765797 -69649445 - FRAM SINE Alu -1 175 11 338 286 88 0 chr6 112765884 112765975 -69649267 - L2 LINE L2 -8 3305 3207 5414 139 39 37 chr6 112766434 112766760 -69648482 + L1PA16 LINE L1 4697 5021 -1145 1642 171 11 7 chr6 112766760 112767040 -69648202 - AluJb SINE Alu -25 287 7 5414 139 39 37 chr6 112767040 112768205 -69647037 + L1PA16 LINE L1 5021 6166 0 197 229 33 33 chr6 112768224 112768285 -69646957 - L2 LINE L2 -2737 577 517 3473 137 26 11 chr6 112768396 112769009 -69646233 - L1MA3 LINE L1 0 6305 5684 2077 117 24 0 chr6 112769684 112769974 -69645268 - AluSx SINE Alu -15 297 1 285 93 0 0 chr6 112770035 112770078 -69645164 - MADE1 DNA Mariner -34 46 4 2040 93 0 0 chr6 112770298 112770556 -69644686 - AluSx SINE Alu -54 258 1 1541 156 0 92 chr6 112770559 112770727 -69644515 - AluJo SINE Alu -11 301 174 2007 92 13 60 chr6 112770727 112771044 -69644198 - AluY SINE Alu -9 302 1 1541 156 0 92 chr6 112771044 112771189 -69644053 - AluJo SINE Alu -138 174 17 403 254 198 30 chr6 112771390 112771587 -69643655 + MIR SINE MIR 6 235 -27 9544 159 15 11 chr6 112771778 112772909 -69642333 - L1PA13 LINE L1 -2 6161 5036 2313 108 0 0 chr6 112772909 112773215 -69642027 - AluSg SINE Alu -4 306 1 9544 159 15 11 chr6 112773215 112774680 -69640562 - L1PA13 LINE L1 -1127 5036 3551 215 214 0 18 chr6 112775983 112776039 -69639203 + (CCCCG)n Simple_repeat Simple_repeat 3 57 0 310 292 84 99 chr6 112776489 112776756 -69638486 - L1M2 LINE L1 -6078 771 510 186 43 0 0 chr6 112776756 112776779 -69638463 + (CGGGG)n Simple_repeat Simple_repeat 1 23 0 310 292 84 99 chr6 112776779 112776915 -69638327 - L1M2 LINE L1 -6339 510 374 21 57 0 0 chr6 112778954 112778989 -69636253 + AT_rich Low_complexity Low_complexity 1 35 0 32 57 0 0 chr6 112779820 112779873 -69635369 + AT_rich Low_complexity Low_complexity 1 53 0 25 65 0 0 chr6 112781380 112781426 -69633816 + AT_rich Low_complexity Low_complexity 1 46 0 2074 129 3 0 chr6 112782434 112782728 -69632514 - AluSx SINE Alu -12 300 6 38 75 0 0 chr6 112782937 112783017 -69632225 + AT_rich Low_complexity Low_complexity 1 80 0 23 0 0 0 chr6 112783080 112783103 -69632139 + AT_rich Low_complexity Low_complexity 1 23 0 256 361 9 37 chr6 112783180 112783288 -69631954 - L2 LINE L2 -60 3212 3108 2260 95 7 0 chr6 112783496 112783792 -69631450 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr6 112783920 112783942 -69631300 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 112785463 112785487 -69629755 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr6 112785826 112785870 -69629372 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr6 112786828 112786851 -69628391 + AT_rich Low_complexity Low_complexity 1 23 0 534 291 12 52 chr6 112787055 112787227 -69628015 - MIR3 SINE MIR -31 177 13 21 36 0 0 chr6 112787843 112787871 -69627371 + AT_rich Low_complexity Low_complexity 1 28 0 290 315 22 0 chr6 112789774 112789863 -69625379 + CT-rich Low_complexity Low_complexity 1 91 0 22 35 0 0 chr6 112790399 112790428 -69624814 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 112793280 112793301 -69621941 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 112795694 112795725 -69619517 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr6 112796489 112796536 -69618706 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr6 112796604 112796627 -69618615 + AT_rich Low_complexity Low_complexity 1 23 0 2248 97 0 3 chr6 112796710 112797009 -69618233 - AluSg SINE Alu -12 298 1 21 0 0 0 chr6 112797633 112797654 -69617588 + AT_rich Low_complexity Low_complexity 1 21 0 2409 60 3 7 chr6 112798353 112798655 -69616587 - AluY SINE Alu -10 301 1 1206 156 5 18 chr6 112798887 112799105 -69616137 - L1MC1 LINE L1 -18 6315 6101 23 0 0 0 chr6 112799172 112799195 -69616047 + AT_rich Low_complexity Low_complexity 1 23 0 548 172 82 33 chr6 112799514 112799636 -69615606 - FLAM_A SINE Alu -5 128 1 1458 191 43 11 chr6 112800557 112800835 -69614407 + AluJb SINE Alu 1 287 -15 863 175 13 13 chr6 112800841 112800995 -69614247 - FRAM SINE Alu -12 154 1 515 277 129 22 chr6 112801229 112801453 -69613789 + MIR SINE MIR 6 253 -9 319 313 28 48 chr6 112801472 112801675 -69613567 + MIR SINE MIR 16 206 -56 1560 169 10 48 chr6 112801764 112801929 -69613313 - AluJo SINE Alu -11 301 152 2437 76 0 0 chr6 112801929 112802230 -69613012 - AluY SINE Alu -10 301 1 1560 169 10 48 chr6 112802230 112802377 -69612865 - AluJo SINE Alu -160 152 1 2164 120 16 3 chr6 112802607 112802916 -69612326 + AluSq SINE Alu 1 313 0 24 0 0 0 chr6 112802960 112802984 -69612258 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr6 112802984 112803005 -69612237 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1568 163 3 66 chr6 112803007 112803308 -69611934 - AluJo SINE Alu -30 282 1 259 125 0 0 chr6 112806539 112806579 -69608663 + LTR62 LTR ERVK 1 40 -679 27 29 0 0 chr6 112807055 112807089 -69608153 + AT_rich Low_complexity Low_complexity 1 34 0 2043 120 0 3 chr6 112807276 112807581 -69607661 - AluSx SINE Alu 0 304 1 26 30 0 0 chr6 112807972 112808005 -69607237 + AT_rich Low_complexity Low_complexity 1 33 0 2219 114 0 0 chr6 112808138 112808435 -69606807 + AluSx SINE Alu 1 297 -15 2305 119 0 0 chr6 112809518 112809828 -69605414 + AluSg SINE Alu 1 310 0 2259 94 0 0 chr6 112810119 112810429 -69604813 - AluSx SINE Alu 0 310 1 236 253 67 27 chr6 112810918 112810956 -69604286 - L2 LINE L2 -16 3256 3221 1615 152 0 98 chr6 112810956 112811291 -69603951 - AluJb SINE Alu -10 302 1 236 253 67 27 chr6 112811291 112811327 -69603915 - L2 LINE L2 -51 3221 3179 365 335 48 67 chr6 112811446 112811759 -69603483 - L2 LINE L2 -50 3222 2916 625 197 31 31 chr6 112812340 112812467 -69602775 - FRAM SINE Alu -14 162 36 2075 144 0 0 chr6 112812869 112813175 -69602067 - AluSg SINE Alu -4 306 1 301 304 208 7 chr6 112813685 112813853 -69601389 + MIR SINE MIR 21 225 -21 24 0 0 0 chr6 112813876 112813900 -69601342 + AT_rich Low_complexity Low_complexity 1 24 0 349 266 89 72 chr6 112814049 112814286 -69600956 + MLT1L LTR MaLR 1 241 -374 541 183 28 35 chr6 112814434 112814500 -69600742 - L1ME4a LINE L1 -3 6118 6053 2217 88 9 25 chr6 112814500 112814817 -69600425 - AluSx SINE Alu 0 312 1 541 183 28 35 chr6 112814817 112814892 -69600350 - L1ME4a LINE L1 -68 6053 5978 23 0 0 0 chr6 112815216 112815239 -69600003 + AT_rich Low_complexity Low_complexity 1 23 0 2123 127 0 0 chr6 112817346 112817637 -69597605 + AluY SINE Alu 5 295 -16 294 298 38 0 chr6 112817778 112817909 -69597333 + MER103 DNA DNA 10 145 -21 1416 204 0 32 chr6 112818103 112818387 -69596855 - AluJo SINE Alu -7 305 31 2166 126 3 0 chr6 112818881 112819183 -69596059 - AluSq SINE Alu -8 305 3 236 337 0 22 chr6 112819243 112819332 -69595910 - MER5C DNA MER1_type -224 100 14 876 191 130 17 chr6 112819524 112819754 -69595488 + MER63C DNA MER1_type 5 260 -670 1381 160 86 8 chr6 112819754 112820010 -69595232 - AluJo SINE Alu -1 311 36 1997 188 17 22 chr6 112820010 112820424 -69594818 + MER63C DNA MER1_type 255 666 -264 734 274 91 39 chr6 112820424 112820731 -69594511 - MER34 LTR ERV1 0 542 220 2167 262 90 74 chr6 112820731 112821273 -69593969 - L1M LINE L1 -812 5334 4802 2191 111 140 11 chr6 112821273 112821652 -69593590 + MSTA LTR MaLR 1 428 0 2167 262 90 74 chr6 112821652 112821947 -69593295 - L1M LINE L1 -1344 4802 4513 2030 189 47 20 chr6 112821947 112822396 -69592846 + MER65C LTR ERV1 1 461 0 2167 262 90 74 chr6 112822396 112822687 -69592555 - L1M LINE L1 -1633 4513 4228 1249 172 143 4 chr6 112822687 112822931 -69592311 - AluJo SINE Alu -30 282 5 2167 262 90 74 chr6 112822931 112823062 -69592180 - L1M LINE L1 -1918 4228 4101 2143 113 3 0 chr6 112823062 112823353 -69591889 - AluSx SINE Alu -20 292 1 2167 262 90 74 chr6 112823353 112823879 -69591363 - L1M LINE L1 -2045 4101 3585 2137 100 7 26 chr6 112823879 112824188 -69591054 - AluSx SINE Alu -9 303 1 2167 262 90 74 chr6 112824188 112824525 -69590717 - L1M LINE L1 -2561 3585 3255 1689 174 23 13 chr6 112824525 112824830 -69590412 - AluSx SINE Alu -2 310 3 2167 262 90 74 chr6 112824830 112824888 -69590354 - L1M LINE L1 -2891 3255 3199 2082 120 9 22 chr6 112824888 112825204 -69590038 - AluSx SINE Alu 0 312 1 2167 262 90 74 chr6 112825204 112825690 -69589552 - L1M LINE L1 -2947 3199 2569 444 239 50 126 chr6 112825698 112825872 -69589370 - L1MEc LINE L1 -3939 2457 2271 6897 74 36 23 chr6 112825872 112827337 -69587905 - SVA Other Other -991 1386 26 444 239 50 126 chr6 112827337 112827380 -69587862 - L1MEc LINE L1 -4125 2271 2226 2069 91 39 7 chr6 112827380 112827666 -69587576 - AluSp SINE Alu -18 295 1 444 239 50 126 chr6 112827666 112827794 -69587448 - L1MEc LINE L1 -4170 2226 2090 279 0 0 0 chr6 112827794 112827825 -69587417 + (TG)n Simple_repeat Simple_repeat 2 32 0 1716 177 10 24 chr6 112827825 112828119 -69587123 - AluJb SINE Alu -22 290 1 444 239 50 126 chr6 112828119 112828247 -69586995 - L1MEc LINE L1 -4304 2092 2016 309 351 79 0 chr6 112828277 112828442 -69586800 - L1M4 LINE L1 -960 5186 5009 1629 150 41 20 chr6 112828499 112828792 -69586450 + AluJo SINE Alu 1 299 -13 2047 124 10 3 chr6 112828863 112829161 -69586081 + AluSx SINE Alu 1 300 -12 2322 73 0 0 chr6 112829327 112829613 -69585629 - AluY SINE Alu -25 286 1 206 396 30 20 chr6 112829725 112829826 -69585416 - L2 LINE L2 -33 3239 3138 442 318 141 40 chr6 112830051 112830234 -69585008 - L2 LINE L2 -446 2868 2705 1312 168 26 9 chr6 112830234 112830466 -69584776 + MER46A DNA MER2_type 1 236 0 442 318 141 40 chr6 112830466 112830885 -69584357 - L2 LINE L2 -609 2705 2205 31 0 0 0 chr6 112831235 112831266 -69583976 + AT_rich Low_complexity Low_complexity 1 31 0 219 114 23 23 chr6 112831266 112831310 -69583932 + (TA)n Simple_repeat Simple_repeat 1 44 0 1662 199 51 9 chr6 112831312 112831802 -69583440 - MER90 LTR ERV1 -23 552 1 790 204 6 29 chr6 112832145 112832309 -69582933 + FRAM SINE Alu 1 161 -151 2478 80 0 0 chr6 112832309 112832620 -69582622 + AluY SINE Alu 1 311 0 24 53 0 0 chr6 112832654 112832692 -69582550 + AT_rich Low_complexity Low_complexity 1 38 0 29 0 0 0 chr6 112834456 112834485 -69580757 + AT_rich Low_complexity Low_complexity 1 29 0 1400 204 4 0 chr6 112834493 112834748 -69580494 - AluJo SINE Alu -56 256 1 228 236 181 55 chr6 112834814 112834941 -69580301 + L1ME4a LINE L1 5666 5808 -2000 1935 106 7 7 chr6 112834995 112835268 -69579974 - AluSp SINE Alu -17 296 24 225 217 217 23 chr6 112835632 112835761 -69579481 + L1ME4a LINE L1 5968 6121 0 53 40 0 0 chr6 112835930 112836004 -69579238 + AT_rich Low_complexity Low_complexity 1 74 0 404 215 248 13 chr6 112836025 112836174 -69579068 - MIR SINE MIR 0 262 79 207 0 0 0 chr6 112837476 112837499 -69577743 + (T)n Simple_repeat Simple_repeat 1 23 0 735 270 29 10 chr6 112837765 112837969 -69577273 - MER3 DNA MER1_type 0 209 2 556 291 60 7 chr6 112838240 112838391 -69576851 + MIR3 SINE MIR 19 177 -31 202 309 73 58 chr6 112838584 112838775 -69576467 - L2 LINE L2 -1323 1991 1798 2122 120 13 7 chr6 112838819 112839120 -69576122 - AluSx SINE Alu -9 303 1 1055 256 135 60 chr6 112839137 112839189 -69576053 - HAL1 LINE L1 -1 2506 2459 3423 61 0 26 chr6 112839189 112839645 -69575597 - MLT2A1 LTR ERVL 0 444 1 1055 256 135 60 chr6 112839645 112840755 -69574487 - HAL1 LINE L1 -48 2459 1223 1337 147 84 47 chr6 112840781 112841118 -69574124 + MSTA LTR MaLR 1 428 0 549 244 138 26 chr6 112841128 112841440 -69573802 - HAL1 LINE L1 -1343 1164 818 2150 107 4 0 chr6 112841604 112841921 -69573321 - AluSq SINE Alu 0 318 1 832 299 62 42 chr6 112841921 112842279 -69572963 - MLT1I LTR MaLR -19 390 26 1376 163 9 21 chr6 112842841 112843074 -69572168 - AluJo SINE Alu -17 295 66 32 0 0 0 chr6 112843101 112843133 -69572109 + AT_rich Low_complexity Low_complexity 1 32 0 710 145 8 8 chr6 112843137 112843254 -69571988 - FLAM_C SINE Alu -16 117 1 2597 44 0 0 chr6 112843672 112843968 -69571274 + AluY SINE Alu 1 296 -15 37 23 0 0 chr6 112844607 112844651 -69570591 + AT_rich Low_complexity Low_complexity 1 44 0 1531 157 4 27 chr6 112845427 112845688 -69569554 + AluJb SINE Alu 44 298 -14 21 36 0 0 chr6 112845787 112845815 -69569427 + AT_rich Low_complexity Low_complexity 1 28 0 2430 229 92 28 chr6 112846028 112846307 -69568935 - L1ME2 LINE L1 -10 6154 5894 895 230 92 99 chr6 112846307 112846505 -69568737 + LTR40b LTR ERVL 1 199 -263 1762 179 3 3 chr6 112846505 112846796 -69568446 - AluJb SINE Alu -18 294 4 895 230 92 99 chr6 112846796 112846913 -69568329 + LTR40b LTR ERVL 199 315 -147 1909 104 19 11 chr6 112846913 112847182 -69568060 + AluSx SINE Alu 37 307 -5 2361 94 0 0 chr6 112847187 112847486 -69567756 + AluSg SINE Alu 1 299 -11 2392 96 0 3 chr6 112847495 112847808 -69567434 + AluSx SINE Alu 1 312 0 895 230 92 99 chr6 112847808 112847940 -69567302 + LTR40b LTR ERVL 327 462 0 2430 229 92 28 chr6 112847940 112848320 -69566922 - L1ME2 LINE L1 -270 5894 5435 2238 93 17 0 chr6 112848320 112848620 -69566622 - AluSp SINE Alu -8 305 1 2430 229 92 28 chr6 112848620 112848746 -69566496 - L1ME2 LINE L1 -729 5435 5318 1868 144 53 3 chr6 112848765 112849049 -69566193 + AluJb SINE Alu 1 298 -14 1682 247 165 29 chr6 112849132 112849460 -69565782 - L1MEc LINE L1 -2756 3459 3177 1421 215 7 39 chr6 112849460 112849635 -69565607 - AluJb SINE Alu -15 297 135 2253 95 3 10 chr6 112849635 112849931 -69565311 - AluSq SINE Alu -19 294 1 1421 215 7 39 chr6 112849931 112850062 -69565180 - AluJb SINE Alu -177 135 1 222 37 0 0 chr6 112850069 112850096 -69565146 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1682 247 165 29 chr6 112850096 112851018 -69564224 - L1MEc LINE L1 -3043 3172 2065 689 263 81 5 chr6 112851022 112851231 -69564011 + MER106A DNA MER1_type 1 225 -11 201 321 60 12 chr6 112851783 112851867 -69563375 + MIR SINE MIR 8 95 -167 250 378 56 85 chr6 112851971 112852084 -69563158 - L2 LINE L2 -14 3258 3143 1580 180 3 53 chr6 112852084 112852407 -69562835 + AluJb SINE Alu 1 307 -5 250 378 56 85 chr6 112852407 112852634 -69562608 - L2 LINE L2 -129 3143 2928 410 217 49 84 chr6 112852750 112852893 -69562349 - MIR SINE MIR -14 248 111 2013 124 3 7 chr6 112852908 112853215 -69562027 + L1PA16 LINE L1 5852 6157 -9 1651 149 7 57 chr6 112853315 112853616 -69561626 + AluJo SINE Alu 16 301 -11 2178 96 0 7 chr6 112854243 112854553 -69560689 - AluSq SINE Alu 0 312 5 404 352 96 52 chr6 112854824 112855208 -69560034 - HAL1 LINE L1 -2106 401 1 808 227 18 0 chr6 112855421 112855584 -69559658 - FRAM SINE Alu 0 166 1 1245 162 110 26 chr6 112855654 112855926 -69559316 - AluJo SINE Alu -15 297 3 21 36 0 0 chr6 112855936 112855964 -69559278 + AT_rich Low_complexity Low_complexity 1 28 0 3722 137 102 29 chr6 112855991 112856057 -69559185 - L1PB4 LINE L1 -129 6027 5967 2512 65 0 10 chr6 112856057 112856364 -69558878 - AluY SINE Alu -7 304 1 3722 137 102 29 chr6 112856364 112857173 -69558069 - L1PB4 LINE L1 -189 5967 5100 3488 126 62 29 chr6 112857563 112858180 -69557062 - MER39B LTR ERV1 -16 637 1 600 46 84 16 chr6 112858520 112858970 -69556272 + (TA)n Simple_repeat Simple_repeat 1 480 0 2144 106 0 31 chr6 112859279 112859601 -69555641 - AluSx SINE Alu 0 312 1 21 36 0 0 chr6 112859849 112859877 -69555365 + AT_rich Low_complexity Low_complexity 1 28 0 270 270 112 0 chr6 112860284 112860373 -69554869 + MER103 DNA DNA 67 165 -1 521 207 81 0 chr6 112860958 112861069 -69554173 + FLAM_A SINE Alu 14 133 -9 393 241 148 47 chr6 112861096 112861440 -69553802 - L1ME4a LINE L1 -214 5907 5529 579 277 122 36 chr6 112862231 112862844 -69552398 - L1ME4a LINE L1 -198 5923 5258 25 90 0 0 chr6 112862859 112862926 -69552316 + AT_rich Low_complexity Low_complexity 1 67 0 21 95 0 0 chr6 112863009 112863072 -69552170 + AT_rich Low_complexity Low_complexity 1 63 0 5058 264 123 23 chr6 112863482 112865316 -69549926 - L2 LINE L2 -436 2878 862 444 305 71 10 chr6 112865344 112865541 -69549701 - Tigger8 DNA MER2_type -258 408 200 2007 115 33 3 chr6 112865894 112866198 -69549044 - AluSq SINE Alu 0 313 1 186 103 0 0 chr6 112866251 112866280 -69548962 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 429 159 57 0 chr6 112866366 112866454 -69548788 - L1MC4a LINE L1 -558 7250 7158 847 185 31 10 chr6 112866458 112866667 -69548575 - L1MC4 LINE L1 -813 7080 6778 21 36 0 0 chr6 112866786 112866814 -69548428 + AT_rich Low_complexity Low_complexity 1 28 0 2107 91 0 7 chr6 112866834 112867110 -69548132 - AluY SINE Alu -3 308 35 2867 252 50 16 chr6 112867132 112867752 -69547490 - L1ME1 LINE L1 -50 6116 5519 1574 200 17 0 chr6 112867752 112868042 -69547200 + AluJb SINE Alu 1 295 -17 2867 252 50 16 chr6 112868042 112868524 -69546718 - L1ME1 LINE L1 -647 5519 4873 30 27 0 0 chr6 112869232 112869269 -69545973 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 112870988 112871011 -69544231 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr6 112872025 112872048 -69543194 + AT_rich Low_complexity Low_complexity 1 23 0 315 191 0 0 chr6 112872760 112872828 -69542414 + C-rich Low_complexity Low_complexity 4 71 0 1905 145 10 3 chr6 112872830 112873120 -69542122 - AluJb SINE Alu -20 292 1 23 33 0 0 chr6 112873185 112873215 -69542027 + AT_rich Low_complexity Low_complexity 1 30 0 345 302 144 10 chr6 112873215 112873417 -69541825 + L1MC/D LINE L1 4911 5139 -1007 979 226 96 45 chr6 112873439 112873969 -69541273 - MLT2E LTR ERVL -2 626 19 287 305 149 0 chr6 112874156 112874297 -69540945 + L1MC/D LINE L1 5427 5588 -578 794 216 53 22 chr6 112874350 112874577 -69540665 - MER112 DNA MER1_type -6 254 21 274 241 108 8 chr6 112874583 112874731 -69540511 + L1MC/D LINE L1 5671 5837 -333 534 266 75 26 chr6 112875218 112875523 -69539719 - L1ME1 LINE L1 -2015 4131 3812 434 276 72 61 chr6 112876056 112876209 -69539033 - L1ME1 LINE L1 -2685 3461 3311 1887 154 3 13 chr6 112876209 112876521 -69538721 - AluJb SINE Alu -3 309 1 434 276 72 61 chr6 112876521 112876758 -69538484 - L1ME1 LINE L1 -2835 3311 3067 456 193 111 94 chr6 112877007 112877188 -69538054 + MER5A DNA MER1_type 2 185 -4 262 115 23 4 chr6 112878454 112878671 -69536571 + AluSx SINE Alu 1 302 0 1650 147 15 61 chr6 112878883 112879209 -69536033 - AluJb SINE Alu -1 311 1 731 142 8 0 chr6 112880019 112880139 -69535103 - L1PB3 LINE L1 -2 6152 6032 691 228 0 0 chr6 112880197 112880320 -69534922 + FLAM_A SINE Alu 3 125 -8 24 32 0 0 chr6 112880527 112880558 -69534684 + AT_rich Low_complexity Low_complexity 1 31 0 604 125 0 133 chr6 112880558 112880594 -69534648 - U6 snRNA snRNA -3 104 65 2164 123 3 3 chr6 112880594 112880895 -69534347 - AluSx SINE Alu -11 301 1 604 125 0 133 chr6 112880895 112880978 -69534264 - U6 snRNA snRNA -42 65 1 28906 41 4 2 chr6 112881329 112885630 -69529612 - L1PA5 LINE L1 -3 6151 1836 2869 22 0 0 chr6 112885630 112885947 -69529295 + AluYb8 SINE Alu 1 317 -1 28906 41 4 2 chr6 112885947 112886031 -69529211 - L1PA5 LINE L1 -4318 1836 1754 733 183 8 0 chr6 112886242 112886373 -69528869 + FLAM_C SINE Alu 1 132 -1 2407 92 0 0 chr6 112886468 112886773 -69528469 + AluSg SINE Alu 1 305 -5 310 275 209 0 chr6 112886906 112886997 -69528245 + L2 LINE L2 3195 3304 -9 1431 299 48 21 chr6 112887051 112887591 -69527651 - L2 LINE L2 0 3313 2755 1572 216 81 9 chr6 112887591 112887924 -69527318 - MSTD LTR MaLR 0 396 40 3094 232 81 26 chr6 112887955 112888692 -69526550 - L1MEd LINE L1 -2752 3674 2979 279 0 0 0 chr6 112888692 112888723 -69526519 + (TG)n Simple_repeat Simple_repeat 1 31 0 3094 232 81 26 chr6 112888723 112889008 -69526234 - L1MEd LINE L1 -3447 2979 2711 360 43 0 0 chr6 112889008 112889054 -69526188 + (TG)n Simple_repeat Simple_repeat 2 47 0 1992 114 0 37 chr6 112889055 112889353 -69525889 - AluSq SINE Alu -26 287 1 3094 232 81 26 chr6 112889353 112889613 -69525629 - L1MEd LINE L1 -3714 2712 2356 344 225 7 78 chr6 112889629 112889771 -69525471 - L1MEd LINE L1 -4402 2205 2074 529 297 21 10 chr6 112889828 112890020 -69525222 + HERVL40 LTR ERVL 4445 4638 -892 557 137 0 21 chr6 112890031 112890126 -69525116 - GSATX Satellite centromeric -62 156 64 482 258 53 74 chr6 112890213 112890641 -69524601 - L1MEd LINE L1 -4754 1672 1223 426 264 42 94 chr6 112890898 112891097 -69524145 - L1ME LINE L1 -5066 1139 931 1462 154 59 29 chr6 112891097 112891370 -69523872 - AluJb SINE Alu -31 281 1 426 264 42 94 chr6 112891370 112891670 -69523572 - L1ME LINE L1 -5274 931 666 322 304 63 72 chr6 112892031 112892361 -69522881 - L1ME LINE L1 -5859 346 74 486 234 90 8 chr6 112892951 112893195 -69522047 + MER20B DNA MER1_type 514 777 -6 860 315 59 56 chr6 112893215 112894041 -69521201 - L1MEd LINE L1 -5287 918 90 256 349 63 61 chr6 112894413 112894791 -69520451 + L2 LINE L2 1903 2281 -1033 2389 85 3 0 chr6 112895217 112895512 -69519730 - AluSp SINE Alu -17 296 1 886 202 0 6 chr6 112895565 112895738 -69519504 - FRAM SINE Alu -4 172 1 217 350 62 0 chr6 112896321 112896401 -69518841 - L2 LINE L2 -1253 2061 1977 180 238 88 50 chr6 112897038 112897118 -69518124 - MIR SINE MIR -124 138 56 23 54 0 0 chr6 112897203 112897240 -69518002 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr6 112897395 112897431 -69517811 + AT_rich Low_complexity Low_complexity 1 36 0 274 146 36 0 chr6 112897451 112897506 -69517736 - MER66A LTR ERV1 -138 340 284 3337 186 142 36 chr6 112897712 112898692 -69516550 - Looper DNA T2_type -7 1551 448 1936 103 0 8 chr6 112898692 112898945 -69516297 + AluSx SINE Alu 32 282 -30 3337 186 142 36 chr6 112898945 112899026 -69516216 - Looper DNA T2_type -1110 448 377 562 220 18 0 chr6 112899045 112899154 -69516088 + FAM SINE Alu 53 163 -22 41 21 0 0 chr6 112899189 112899237 -69516005 + AT_rich Low_complexity Low_complexity 1 48 0 279 209 0 0 chr6 112899252 112899319 -69515923 - Looper DNA T2_type -1257 301 235 1528 205 80 15 chr6 112899456 112899856 -69515386 - LTR37A LTR ERV1 0 426 1 1947 124 0 21 chr6 112901206 112901488 -69513754 + AluJo SINE Alu 13 288 -24 184 132 94 57 chr6 112903991 112904044 -69511198 + MIR SINE MIR 145 199 -63 2177 129 0 3 chr6 112904244 112904555 -69510687 + AluSx SINE Alu 1 310 -2 1376 143 162 23 chr6 112904753 112905012 -69510230 + AluJb SINE Alu 2 296 -16 233 238 24 0 chr6 112905243 112905327 -69509915 + CT-rich Low_complexity Low_complexity 4 89 0 724 240 13 13 chr6 112905441 112905591 -69509651 - MER5B DNA MER1_type -2 176 27 1428 186 61 4 chr6 112905773 112905902 -69509340 + AluJb SINE Alu 1 121 -191 441 0 0 0 chr6 112905902 112905951 -69509291 + (CA)n Simple_repeat Simple_repeat 1 49 0 1428 186 61 4 chr6 112905951 112906100 -69509142 + AluJb SINE Alu 121 295 -17 216 0 0 0 chr6 112906181 112906205 -69509037 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 2024 128 0 11 chr6 112906206 112906487 -69508755 - AluSg SINE Alu -32 278 1 315 289 0 0 chr6 112906572 112906662 -69508580 - L1MC4a LINE L1 -1904 5904 5815 540 314 14 14 chr6 112906798 112907005 -69508237 - L1MC4a LINE L1 -2074 5734 5528 210 37 0 0 chr6 112907392 112907419 -69507823 + (TG)n Simple_repeat Simple_repeat 2 28 0 386 279 7 27 chr6 112907565 112907712 -69507530 + MIR SINE MIR 119 262 0 2456 61 0 3 chr6 112909512 112909807 -69505435 - AluY SINE Alu -17 294 1 2017 148 0 6 chr6 112910006 112910317 -69504925 - AluSx SINE Alu -3 309 1 2170 101 10 7 chr6 112911916 112912214 -69503028 - AluSc SINE Alu -10 299 1 2097 109 18 0 chr6 112912257 112912540 -69502702 + AluSx SINE Alu 1 288 -24 382 137 84 0 chr6 112919215 112919264 -69495978 - L1MB2 LINE L1 -2 6169 6126 1607 192 14 14 chr6 112919264 112919556 -69495686 - AluJo SINE Alu -20 292 1 382 137 84 0 chr6 112919556 112919601 -69495641 - L1MB2 LINE L1 -45 6126 6067 1757 138 6 72 chr6 112919746 112920066 -69495176 - AluJb SINE Alu -13 299 1 818 176 30 0 chr6 112920066 112920197 -69495045 - AluJb SINE Alu -177 135 1 280 187 93 27 chr6 112920207 112920282 -69494960 - L1ME4a LINE L1 -69 6052 5973 405 70 0 0 chr6 112920283 112920340 -69494902 + (CA)n Simple_repeat Simple_repeat 2 58 0 1721 129 86 11 chr6 112920349 112920629 -69494613 - AluSx SINE Alu -11 301 1 279 0 0 0 chr6 112921087 112921118 -69494124 + (TC)n Simple_repeat Simple_repeat 1 31 0 * 441 0 0 0 chr6 112921117 112921166 -69494076 + (CA)n Simple_repeat Simple_repeat 1 49 0 2132 129 6 3 chr6 112921715 112922026 -69493216 - AluSx SINE Alu 0 312 1 898 80 0 0 chr6 112922658 112922770 -69492472 + L1MA2 LINE L1 6193 6304 0 1554 174 40 20 chr6 112923464 112923573 -69491669 + AluJo SINE Alu 3 108 -204 2474 133 28 17 chr6 112923573 112923933 -69491309 + THE1B LTR MaLR 1 364 0 1554 174 40 20 chr6 112923933 112924127 -69491115 + AluJo SINE Alu 108 312 0 189 180 124 90 chr6 112924452 112924541 -69490701 - MIR SINE MIR -73 189 98 2322 95 0 0 chr6 112924838 112925133 -69490109 - AluSg SINE Alu -15 295 1 2141 101 20 10 chr6 112925135 112925432 -69489810 - AluSq SINE Alu -13 300 1 305 169 31 0 chr6 112925556 112925621 -69489621 + MER5B DNA MER1_type 1 67 -111 188 219 49 0 chr6 112925935 112925976 -69489266 + MER5A DNA MER1_type 2 44 -145 1383 151 0 0 chr6 112925976 112926188 -69489054 + AluJb SINE Alu 85 296 -16 702 244 151 58 chr6 112926208 112926519 -69488723 - MER87 LTR ERV1 -201 340 1 203 239 0 60 chr6 112926851 112926918 -69488324 - L2 LINE L2 -13 3259 3197 189 247 143 13 chr6 112926898 112926975 -69488267 - MIR SINE MIR -125 137 51 * 532 238 160 21 chr6 112927341 112927560 -69487682 + MIR SINE MIR 6 253 -9 1838 147 0 42 chr6 112927707 112928019 -69487223 - AluJb SINE Alu -13 299 1 1923 152 3 3 chr6 112928669 112928978 -69486264 + AluJb SINE Alu 1 309 -3 1343 166 0 18 chr6 112929131 112929360 -69485882 + AluJo SINE Alu 75 299 -13 240 273 13 13 chr6 112929415 112929492 -69485750 + MIR SINE MIR 72 148 -114 203 350 111 18 chr6 112929812 112930038 -69485204 - L2 LINE L2 -490 2824 2578 1722 157 63 178 chr6 112930057 112930366 -69484876 - Charlie1 DNA MER1_type -141 2620 2442 1801 153 45 3 chr6 112930366 112930654 -69484588 - AluSx SINE Alu -12 300 1 1722 157 63 178 chr6 112930654 112931076 -69484166 - Charlie1 DNA MER1_type -319 2442 1973 429 284 123 26 chr6 112931088 112931356 -69483886 + L2 LINE L2 2236 2529 -785 1867 159 21 0 chr6 112934185 112934468 -69480774 - AluJb SINE Alu -23 289 1 2422 74 0 3 chr6 112935537 112935833 -69479409 + AluY SINE Alu 1 295 -16 492 174 0 0 chr6 112935836 112935928 -69479314 + (TATG)n Simple_repeat Simple_repeat 1 92 0 213 388 0 0 chr6 112937195 112937262 -69477980 - L2 LINE L2 -1 3312 3246 640 304 83 0 chr6 112937834 112938074 -69477168 + MIR SINE MIR 3 262 0 807 220 28 17 chr6 112938425 112938602 -69476640 + MIR SINE MIR 77 255 -7 2838 103 25 27 chr6 112942124 112942562 -69472680 - L1MA3 LINE L1 -5 6300 5864 325 269 28 41 chr6 112943511 112943656 -69471586 + HAL1 LINE L1 1775 1917 -590 273 285 114 0 chr6 112944155 112944278 -69470964 + HAL1b LINE L1 746 882 -466 1610 159 35 17 chr6 112944278 112944567 -69470675 - AluJb SINE Alu -18 294 1 1694 137 0 85 chr6 112944785 112945092 -69470150 + AluJb SINE Alu 21 301 -11 284 200 46 0 chr6 112945443 112945478 -69469764 + MIR SINE MIR 125 162 -100 228 273 91 104 chr6 112945478 112945632 -69469610 + MIR3 SINE MIR 1 152 -56 1806 165 0 7 chr6 112945998 112946295 -69468947 - AluJo SINE Alu -17 295 1 311 229 85 17 chr6 112947230 112947348 -69467894 + L1MC5 LINE L1 7312 7437 -524 489 217 175 6 chr6 112947353 112947495 -69467747 + MER5A DNA MER1_type 6 175 -14 199 291 39 71 chr6 112948023 112948150 -69467092 + MIR SINE MIR 85 207 -55 1936 159 3 3 chr6 112948233 112948541 -69466701 - AluJb SINE Alu -4 308 1 253 276 78 43 chr6 112948542 112948658 -69466584 + MIR SINE MIR 23 142 -120 338 290 47 57 chr6 112948763 112948956 -69466286 + MLT1I LTR MaLR 82 272 -137 579 232 78 0 chr6 112949013 112949155 -69466087 - AluJb SINE Alu -54 258 106 537 187 0 104 chr6 112949150 112949284 -69465958 + AluJo/FRAM SINE Alu 192 311 -1 * 1597 157 105 81 chr6 112949299 112949708 -69465534 + MER34 LTR ERV1 124 542 0 2246 49 0 8 chr6 112950402 112950666 -69464576 - AluY SINE Alu -18 293 32 476 100 0 0 chr6 112950666 112950726 -69464516 - Alu SINE Alu -250 61 2 182 319 69 0 chr6 112951219 112951291 -69463951 + MIR SINE MIR 186 262 0 201 336 197 0 chr6 112953027 112953149 -69462093 + L2 LINE L2 3125 3270 -2 1074 147 0 103 chr6 112953167 112953399 -69461843 + AluJb SINE Alu 95 302 -10 566 300 58 9 chr6 112953777 112954000 -69461242 - L2 LINE L2 0 3313 3080 1956 142 3 7 chr6 112954211 112954514 -69460728 + AluSx SINE Alu 1 302 -10 210 95 0 95 chr6 112954698 112954740 -69460502 - L2 LINE L2 -104 3209 3172 2907 6 0 0 chr6 112955287 112955598 -69459644 + AluYa5 SINE Alu 1 311 0 2234 111 0 7 chr6 112956572 112956878 -69458364 - AluSx SINE Alu -8 304 1 2424 69 26 0 chr6 112958699 112959002 -69456240 - AluY SINE Alu 0 311 1 2532 75 0 0 chr6 112959412 112959720 -69455522 + AluY SINE Alu 1 308 -3 394 222 12 0 chr6 112960220 112960301 -69454941 + MER94 DNA DNA 5 86 -48 811 186 39 13 chr6 112961102 112961258 -69453984 + AluJo SINE Alu 11 170 -142 2257 95 3 7 chr6 112961263 112961568 -69453674 + AluSq SINE Alu 10 313 0 237 132 0 0 chr6 112961573 112961611 -69453631 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 988 144 14 0 chr6 112961617 112961763 -69453479 + AluJo SINE Alu 157 304 -8 1720 151 63 0 chr6 112962762 112963047 -69452195 - AluJo SINE Alu -9 303 1 2111 127 7 7 chr6 112963064 112963371 -69451871 - AluSx SINE Alu -5 307 1 209 282 13 39 chr6 112963393 112963471 -69451771 - L2 LINE L2 -3 3310 3235 733 273 53 77 chr6 112963570 112963870 -69451372 + MLT1I LTR MaLR 99 391 -18 23 0 0 0 chr6 112964666 112964689 -69450553 + AT_rich Low_complexity Low_complexity 1 23 0 543 198 0 0 chr6 112964899 112964995 -69450247 - Tigger7 DNA MER2_type 0 2487 2392 1201 237 72 0 chr6 112964996 112965245 -69449997 - Tigger7 DNA MER2_type -2220 267 1 440 246 179 65 chr6 112965329 112965836 -69449406 - L1ME4a LINE L1 -22 6099 5535 1387 171 115 25 chr6 112965866 112966152 -69449090 - MER7A DNA MER2_type -1 345 36 23 0 0 0 chr6 112966597 112966620 -69448622 + AT_rich Low_complexity Low_complexity 1 23 0 258 326 16 114 chr6 112966638 112966750 -69448492 + MIR3 SINE MIR 22 109 -99 1602 181 76 0 chr6 112966750 112967027 -69448215 - AluJb SINE Alu -14 298 1 258 326 16 114 chr6 112967027 112967107 -69448135 + MIR3 SINE MIR 109 195 -13 2267 110 3 0 chr6 112967278 112967577 -69447665 - AluSx SINE Alu -12 300 1 242 338 78 14 chr6 112967643 112967785 -69447457 + L2 LINE L2 2945 3095 -177 838 266 38 8 chr6 112968169 112968406 -69446836 - MIR SINE MIR 0 262 19 228 267 144 0 chr6 112969068 112969158 -69446084 + MIR SINE MIR 120 222 -40 219 219 61 0 chr6 112969448 112969530 -69445712 + (CATA)n Simple_repeat Simple_repeat 1 87 0 195 114 0 0 chr6 112971039 112971074 -69444168 + (TA)n Simple_repeat Simple_repeat 2 36 0 302 307 73 108 chr6 112971988 112972587 -69442655 + L1M2 LINE L1 661 1238 -5611 732 283 40 14 chr6 112973499 112973639 -69441603 + MIR SINE MIR 4 154 -108 309 89 0 0 chr6 112973639 112973684 -69441558 + (ATG)n Simple_repeat Simple_repeat 2 46 0 732 283 40 14 chr6 112973684 112973766 -69441476 + MIR SINE MIR 154 232 -30 1118 87 27 0 chr6 112973896 112974046 -69441196 - AluSp SINE Alu -20 293 140 385 237 51 0 chr6 112974102 112974220 -69441022 + L1ME LINE L1 5670 5793 -328 209 296 0 0 chr6 112974233 112974287 -69440955 + MIR SINE MIR 20 73 -189 1177 182 157 0 chr6 112974408 112974694 -69440548 + MER58B DNA MER1_type 10 340 -1 1694 136 44 0 chr6 112975438 112975689 -69439553 + AluSx SINE Alu 39 300 -12 1978 167 131 7 chr6 112975947 112976397 -69438845 - L1MC2 LINE L1 0 6344 5839 8639 170 52 12 chr6 112976408 112977899 -69437343 - L1MA9 LINE L1 -72 6240 4811 1937 122 0 14 chr6 112977899 112978217 -69437025 - AluSx SINE Alu 0 314 1 8639 170 52 12 chr6 112978217 112978800 -69436442 - L1MA9 LINE L1 -1501 4811 4253 1611 209 6 19 chr6 112978800 112979115 -69436127 - AluJo SINE Alu -1 311 1 8639 170 52 12 chr6 112979115 112979863 -69435379 - L1MA9 LINE L1 -2059 4253 3308 1649 146 96 44 chr6 112979863 112980247 -69434995 - L1MC2 LINE L1 -491 5853 5450 1591 194 40 3 chr6 112980541 112980840 -69434402 + AluJb SINE Alu 1 310 -2 2374 93 3 0 chr6 112980858 112981158 -69434084 + AluSc SINE Alu 1 301 -8 261 332 67 34 chr6 112981233 112981441 -69433801 + MIR SINE MIR 20 234 -28 1929 81 0 0 chr6 112981756 112981992 -69433250 + AluY SINE Alu 56 291 -20 22 35 0 0 chr6 112982205 112982234 -69433008 + AT_rich Low_complexity Low_complexity 1 29 0 2327 96 7 0 chr6 112982851 112983152 -69432090 + AluSx SINE Alu 1 303 -9 258 411 31 16 chr6 112984282 112984411 -69430831 + L2 LINE L2 3123 3253 -19 1167 171 30 26 chr6 112985049 112985283 -69429959 + AluJo SINE Alu 73 307 -5 5694 134 30 12 chr6 112985334 112986408 -69428834 - L1MA4 LINE L1 -6 6294 5202 1277 118 25 0 chr6 112986512 112986716 -69428526 + MER2 DNA MER2_type 2 210 -135 313 219 0 0 chr6 112986838 112986902 -69428340 + MER2 DNA MER2_type 282 345 0 1772 121 136 18 chr6 112986949 112987279 -69427963 + MER93b LTR ERV1 5 373 0 999 163 0 51 chr6 112987568 112987746 -69427496 + AluSg/x SINE Alu 121 289 -21 272 289 8 86 chr6 112987758 112987886 -69427356 - L2 LINE L2 -1 3312 3195 22 80 0 0 chr6 112988866 112988916 -69426326 + AT_rich Low_complexity Low_complexity 1 50 0 726 186 0 0 chr6 112990192 112990321 -69424921 + MER45A DNA AcHobo 2 130 -48 25 0 0 0 chr6 112990469 112990494 -69424748 + AT_rich Low_complexity Low_complexity 1 25 0 2927 239 142 8 chr6 112991371 112992307 -69422935 + L2 LINE L2 1342 2402 -912 1212 266 97 15 chr6 112992309 112992887 -69422355 + L2 LINE L2 2665 3305 -8 24 32 0 0 chr6 112994635 112994666 -69420576 + AT_rich Low_complexity Low_complexity 1 31 0 315 138 46 0 chr6 112995366 112995431 -69419811 + L1ME3A LINE L1 6094 6161 -9 2205 105 7 7 chr6 112995519 112995824 -69419418 - AluSx SINE Alu -7 305 1 1825 134 0 28 chr6 112995902 112996193 -69419049 - AluSx SINE Alu -11 301 19 237 143 0 24 chr6 112996193 112996229 -69419013 - AluSx SINE Alu -267 35 1 1781 147 7 14 chr6 112997760 112998046 -69417196 + AluSx SINE Alu 1 284 -28 387 211 63 11 chr6 112998060 112998155 -69417087 + MER5A DNA MER1_type 66 165 -24 353 253 53 73 chr6 112998152 112998302 -69416940 - MIR SINE MIR -61 201 55 * 237 291 36 36 chr6 113000332 113000442 -69414800 - MIR SINE MIR -97 165 56 467 261 190 0 chr6 113001229 113001413 -69413829 - MIR SINE MIR -11 251 33 377 261 217 14 chr6 113001396 113001534 -69413708 + MIR3 SINE MIR 41 206 -2 * 426 266 9 18 chr6 113001624 113001737 -69413505 - MER5B DNA MER1_type -60 118 7 243 0 0 0 chr6 113002179 113002206 -69413036 + (TG)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr6 113002243 113002278 -69412964 + AT_rich Low_complexity Low_complexity 1 35 0 617 168 168 5 chr6 113002737 113002775 -69412467 + Charlie5 DNA MER1_type 2397 2427 -197 2293 120 0 0 chr6 113002775 113003083 -69412159 + AluSx SINE Alu 1 308 -4 617 168 168 5 chr6 113003083 113003240 -69412002 + Charlie5 DNA MER1_type 2427 2624 0 1525 221 78 77 chr6 113003859 113004446 -69410796 + MLT1E LTR MaLR 2 589 -4 416 303 56 7 chr6 113005053 113005195 -69410047 - MIR SINE MIR -100 162 14 1925 146 0 7 chr6 113006697 113006984 -69408258 + AluJo SINE Alu 1 285 -27 35 0 0 0 chr6 113006984 113007019 -69408223 + AT_rich Low_complexity Low_complexity 1 35 0 207 161 0 0 chr6 113007019 113007050 -69408192 - L2 LINE L2 -96 3217 3187 809 181 0 0 chr6 113007161 113007294 -69407948 - FLAM_C SINE Alu 0 133 1 7491 29 0 3 chr6 113007323 113008353 -69406889 + L1PA4 LINE L1 5122 6148 -7 257 300 50 50 chr6 113008769 113008909 -69406333 - MIR SINE MIR 0 262 123 772 254 50 63 chr6 113009038 113009361 -69405881 + HAL1b LINE L1 80 397 -951 2168 104 14 3 chr6 113009361 113009649 -69405593 - AluSq SINE Alu -22 291 1 772 254 50 63 chr6 113009649 113009785 -69405457 + HAL1b LINE L1 397 533 -815 260 175 254 0 chr6 113009785 113009848 -69405394 - Tigger5 DNA MER2_type 0 2323 2245 426 200 0 12 chr6 113009921 113010001 -69405241 - Tigger5 DNA MER2_type -2244 79 1 917 227 141 54 chr6 113010002 113010197 -69405045 + HAL1b LINE L1 536 713 -635 2239 103 0 0 chr6 113010197 113010489 -69404753 + AluSg SINE Alu 1 292 -18 917 227 141 54 chr6 113010489 113010567 -69404675 + HAL1b LINE L1 713 783 -565 1723 185 3 7 chr6 113010567 113010869 -69404373 + AluJb SINE Alu 1 301 -11 2210 122 3 3 chr6 113010871 113011183 -69404059 + AluSx SINE Alu 1 312 0 917 227 141 54 chr6 113011183 113011460 -69403782 + HAL1b LINE L1 783 1138 -210 787 242 126 8 chr6 113011460 113011754 -69403488 - MER57A LTR ERV1 0 403 60 2339 78 0 7 chr6 113011875 113012169 -69403073 - AluSx SINE Alu -20 292 1 246 263 25 0 chr6 113012175 113012255 -69402987 + HAL1b LINE L1 1184 1265 -83 27 29 0 0 chr6 113012344 113012378 -69402864 + AT_rich Low_complexity Low_complexity 1 34 0 333 187 6 25 chr6 113012667 113012773 -69402469 - L1MC5 LINE L1 -1 8041 7832 227 304 123 14 chr6 113012864 113013002 -69402240 - MIR SINE MIR -3 259 107 423 0 0 0 chr6 113013874 113013921 -69401321 + (CA)n Simple_repeat Simple_repeat 2 48 0 224 307 80 0 chr6 113013932 113014007 -69401235 - MIR3 SINE MIR -13 195 115 331 281 92 53 chr6 113015235 113015463 -69399779 - L1M2 LINE L1 -5837 1012 776 938 159 31 6 chr6 113015704 113015867 -69399375 - AluJb SINE Alu -13 299 133 424 241 21 3 chr6 113016943 113017066 -69398176 - LTR43 LTR ERV1 -214 465 189 1558 239 49 33 chr6 113017287 113017776 -69397466 + MLT1E LTR MaLR 8 504 -89 297 302 109 52 chr6 113018023 113018148 -69397094 - L1MC/D LINE L1 -440 5681 5565 3713 82 89 7 chr6 113018148 113018735 -69396507 - LTR24C LTR ERV1 0 635 1 297 302 109 52 chr6 113018735 113018773 -69396469 - L1MC/D LINE L1 -556 5565 5531 2194 134 0 10 chr6 113018773 113019086 -69396156 - AluSx SINE Alu -2 310 1 297 302 109 52 chr6 113019086 113019354 -69395888 - L1MC/D LINE L1 -590 5531 5456 298 280 0 48 chr6 113019367 113019492 -69395750 + CT-rich Low_complexity Low_complexity 2 120 0 49 43 0 0 chr6 113019498 113019568 -69395674 + AT_rich Low_complexity Low_complexity 1 70 0 4923 167 38 0 chr6 113019682 113020588 -69394654 - L1MB5 LINE L1 -6 6168 5232 2047 109 48 0 chr6 113020590 113020884 -69394358 + AluSq SINE Alu 1 308 -5 216 281 20 16 chr6 113021067 113021247 -69393995 + GA-rich Low_complexity Low_complexity 3 253 0 243 164 0 66 chr6 113021370 113021431 -69393811 - AluJ/FLAM SINE Alu -245 57 1 2243 184 46 104 chr6 113021439 113021870 -69393372 - L1MB5 LINE L1 -978 5168 4803 2190 99 0 23 chr6 113021870 113022173 -69393069 - AluSx SINE Alu -16 296 1 2243 184 46 104 chr6 113022173 113022542 -69392700 - L1MB5 LINE L1 -1343 4803 4414 1657 188 13 23 chr6 113023055 113023364 -69391878 + AluJb SINE Alu 1 306 -6 24 0 0 0 chr6 113024280 113024304 -69390938 + AT_rich Low_complexity Low_complexity 1 24 0 221 123 140 0 chr6 113024789 113024846 -69390396 + MIR3 SINE MIR 111 175 -33 304 251 55 129 chr6 113025381 113025473 -69389769 + MIR SINE MIR 64 140 -122 2265 99 0 0 chr6 113025473 113025757 -69389485 + AluSc SINE Alu 1 284 -25 304 251 55 129 chr6 113025757 113025827 -69389415 + MIR SINE MIR 140 214 -48 783 259 57 13 chr6 113026457 113026685 -69388557 - MIR SINE MIR -23 239 2 508 113 0 25 chr6 113026792 113026872 -69388370 - MADE1 DNA Mariner 0 80 3 1036 170 0 0 chr6 113027364 113027529 -69387713 + MER75 DNA T2_type 2 166 -348 2125 100 41 3 chr6 113027531 113027822 -69387420 - AluSx SINE Alu -10 302 1 922 80 0 0 chr6 113027822 113027935 -69387307 - AluSq/x SINE Alu -177 135 23 2631 70 53 0 chr6 113027936 113028278 -69386964 + MER75 DNA T2_type 155 514 0 219 333 22 44 chr6 113028315 113028450 -69386792 - MIR SINE MIR -129 133 2 2435 134 27 61 chr6 113028698 113029139 -69386103 + MSTB LTR MaLR 1 426 0 1658 189 20 0 chr6 113030785 113031081 -69384161 + AluJo SINE Alu 1 302 -10 15730 116 40 28 chr6 113031150 113031204 -69384038 + Tigger1 DNA MER2_type 1 53 -2365 1838 127 57 25 chr6 113031204 113031487 -69383755 - AluSx SINE Alu -20 292 1 15730 116 40 28 chr6 113031487 113031961 -69383281 + Tigger1 DNA MER2_type 53 520 -1898 1932 123 11 3 chr6 113031961 113032245 -69382997 + AluSc SINE Alu 1 286 -23 15730 116 40 28 chr6 113032245 113032525 -69382717 + Tigger1 DNA MER2_type 520 795 -1623 2396 73 0 16 chr6 113032525 113032840 -69382402 + AluY SINE Alu 2 311 0 15730 116 40 28 chr6 113032840 113033457 -69381785 + Tigger1 DNA MER2_type 795 1403 -1015 1852 95 0 0 chr6 113033457 113033689 -69381553 + AluSc SINE Alu 77 308 -1 15730 116 40 28 chr6 113033689 113033808 -69381434 + Tigger1 DNA MER2_type 1403 1519 -899 2054 116 0 70 chr6 113033808 113034136 -69381106 + AluSx SINE Alu 1 305 -7 15730 116 40 28 chr6 113034136 113034518 -69380724 + Tigger1 DNA MER2_type 1519 1895 -523 2338 81 7 0 chr6 113034518 113034814 -69380428 - AluSx SINE Alu -14 298 1 15730 116 40 28 chr6 113034814 113035271 -69379971 + Tigger1 DNA MER2_type 1895 2418 0 189 107 0 0 chr6 113035648 113035676 -69379566 + (A)n Simple_repeat Simple_repeat 1 28 0 189 74 0 0 chr6 113036276 113036303 -69378939 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1592 149 78 19 chr6 113036306 113036574 -69378668 - AluJo SINE Alu -28 284 1 2252 121 0 7 chr6 113036585 113036892 -69378350 - AluSx SINE Alu -7 305 1 291 200 38 50 chr6 113036998 113037078 -69378164 - L1MC5 LINE L1 -48 7913 7835 248 211 118 0 chr6 113037134 113037210 -69378032 + L1ME3A LINE L1 3425 3509 -2637 2616 94 46 0 chr6 113037247 113037598 -69377644 + L1PA10 LINE L1 5798 6164 -4 1155 229 110 57 chr6 113037762 113038034 -69377208 + L1ME3A LINE L1 5665 5974 -196 1459 191 170 15 chr6 113038034 113038375 -69376867 + MSTD LTR MaLR 3 396 0 1155 229 110 57 chr6 113038375 113038574 -69376668 + L1ME3A LINE L1 5974 6161 -9 2250 103 3 13 chr6 113039002 113039177 -69376065 - AluSx SINE Alu -4 308 136 2160 91 7 7 chr6 113039177 113039486 -69375756 - AluSc SINE Alu 0 309 1 2250 103 3 13 chr6 113039486 113039621 -69375621 - AluSx SINE Alu -176 136 1 2277 110 20 0 chr6 113041038 113041339 -69373903 - AluSq SINE Alu -6 307 1 2912 171 91 12 chr6 113041707 113042304 -69372938 - MER73 LTR ERVL 0 644 1 2420 92 0 13 chr6 113042305 113042621 -69372621 + AluSq SINE Alu 1 312 -1 1932 177 46 0 chr6 113042888 113043216 -69372026 + MER2 DNA MER2_type 2 344 0 4920 95 79 80 chr6 113043228 113044125 -69371117 - Tigger3b DNA MER2_type 0 1231 336 890 141 0 7 chr6 113044125 113044260 -69370982 - AluJo SINE Alu -178 134 1 519 226 0 0 chr6 113044328 113044430 -69370812 - Tigger3b DNA MER2_type -1129 102 1 214 279 205 42 chr6 113044440 113044630 -69370612 + L2 LINE L2 2294 2514 -800 210 322 92 13 chr6 113044700 113044852 -69370390 + L2 LINE L2 2653 2816 -498 593 234 0 28 chr6 113044927 113045068 -69370174 - LTR16A LTR ERVL -1 449 313 1392 160 14 0 chr6 113045371 113045583 -69369659 + MER20 DNA MER1_type 1 215 -4 517 303 110 52 chr6 113045810 113046193 -69369049 - LTR67 LTR ERVL -1 556 152 844 133 0 49 chr6 113047032 113047175 -69368067 - AluJo SINE Alu -176 136 1 207 0 0 0 chr6 113047187 113047210 -69368032 + (A)n Simple_repeat Simple_repeat 1 23 0 332 143 0 0 chr6 113047621 113047684 -69367558 - L1MD3 LINE L1 0 7995 7933 232 283 0 0 chr6 113047832 113047885 -69367357 + MER5A DNA MER1_type 136 188 -1 372 279 174 36 chr6 113048062 113048338 -69366904 + L2 LINE L2 2938 3251 -62 28 61 0 0 chr6 113048743 113048792 -69366450 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr6 113048834 113048860 -69366382 + AT_rich Low_complexity Low_complexity 1 26 0 1207 252 32 24 chr6 113049324 113049693 -69365549 + L1ME2 LINE L1 5792 6163 -1 422 218 106 14 chr6 113051553 113051695 -69363547 - L1MC5 LINE L1 -722 7239 7085 3157 98 40 31 chr6 113051695 113051865 -69363377 - MLT2A2 LTR ERVL 0 453 286 2430 82 10 0 chr6 113051865 113052170 -69363072 + AluY SINE Alu 1 308 -3 3157 98 40 31 chr6 113052170 113052448 -69362794 - MLT2A2 LTR ERVL -167 286 1 20152 72 11 4 chr6 113052448 113052722 -69362520 - HERVL-A2 LTR ERVL 0 5654 5383 2272 99 0 3 chr6 113052722 113053024 -69362218 - AluY SINE Alu -10 301 1 20152 72 11 4 chr6 113053024 113055290 -69359952 - HERVL-A2 LTR ERVL -271 5383 3096 28902 74 26 2 chr6 113055394 113059091 -69356151 - HERVL-A2 LTR ERVL -1866 3788 1 3158 85 69 28 chr6 113059091 113059526 -69355716 - MLT2A2 LTR ERVL 0 453 1 2015 141 3 0 chr6 113059819 113060117 -69355125 + AluSx SINE Alu 1 299 -13 974 179 67 60 chr6 113060881 113061149 -69354093 - L1MC5 LINE L1 -999 6962 6693 1925 132 7 0 chr6 113061564 113061837 -69353405 - AluSx SINE Alu -37 275 1 507 17 0 0 chr6 113062458 113062518 -69352724 + (CA)n Simple_repeat Simple_repeat 1 60 0 438 178 33 0 chr6 113062661 113062751 -69352491 - MER5A DNA MER1_type -83 106 14 581 310 64 0 chr6 113062885 113063072 -69352170 - MLT1J LTR MaLR -312 199 1 234 0 0 0 chr6 113063237 113063263 -69351979 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2041 128 17 0 chr6 113064304 113064594 -69350648 - AluSg SINE Alu 0 310 16 1528 108 5 9 chr6 113064701 113064914 -69350328 + AluSx SINE Alu 25 236 -76 24883 119 105 63 chr6 113064933 113070838 -69344404 - L1PA8 LINE L1 -21 6151 2 15309 183 28 36 chr6 113071099 113072743 -69342499 + L1PB1 LINE L1 89 1744 -5123 2094 131 7 0 chr6 113072743 113073049 -69342193 + AluSx SINE Alu 3 310 -2 15309 183 28 36 chr6 113073049 113078102 -69337140 + L1PB1 LINE L1 1744 6865 -2 455 73 15 0 chr6 113078595 113078663 -69336579 + (TA)n Simple_repeat Simple_repeat 1 69 0 3930 208 58 29 chr6 113078667 113079672 -69335570 - L1MC3 LINE L1 -18 7767 6734 486 0 0 0 chr6 113080357 113080411 -69334831 + (CA)n Simple_repeat Simple_repeat 2 55 0 45002 39 3 1 chr6 113080753 113086899 -69328343 + L1PA3 LINE L1 3 6155 0 2530 163 103 4 chr6 113087109 113087574 -69327668 - MER68 LTR ERV1 -50 512 2 1973 207 88 19 chr6 113087742 113088210 -69327032 - MER74B LTR ERVL -67 555 56 2270 150 59 16 chr6 113088852 113089291 -69325951 + L1MB4 LINE L1 5722 6179 -1 237 221 67 87 chr6 113089720 113089824 -69325418 + MIR SINE MIR 50 151 -57 2120 197 45 32 chr6 113090146 113090588 -69324654 + MLT2B1 LTR ERVL 1 451 -69 2541 51 0 0 chr6 113090588 113090884 -69324358 - AluY SINE Alu -15 296 1 2120 197 45 32 chr6 113090884 113090913 -69324329 + MLT2B1 LTR ERVL 451 478 -42 904 131 0 0 chr6 113090926 113091056 -69324186 + AluSq/x SINE Alu 3 132 -181 2372 98 0 13 chr6 113091058 113091373 -69323869 + AluSx SINE Alu 1 311 -1 2079 262 103 55 chr6 113091387 113091642 -69323600 + L2 LINE L2 1474 1715 -1599 2230 113 0 7 chr6 113091642 113091952 -69323290 - AluSg SINE Alu -2 308 1 2079 262 103 55 chr6 113091952 113092653 -69322589 + L2 LINE L2 1715 2476 -838 250 310 80 10 chr6 113094399 113094499 -69320743 - MIR3 SINE MIR -13 195 89 2037 121 27 3 chr6 113095609 113095906 -69319336 - AluSx SINE Alu -8 304 1 1016 138 0 13 chr6 113095949 113096101 -69319141 + AluSq/x SINE Alu 1 150 -163 595 136 0 0 chr6 113096101 113096189 -69319053 + AluS SINE Alu 220 307 -5 1685 196 71 6 chr6 113096274 113096600 -69318642 + MER7A DNA MER2_type 2 346 0 195 257 168 35 chr6 113097239 113097352 -69317890 + L2 LINE L2 3141 3268 -4 1304 14 7 0 chr6 113098232 113098374 -69316868 + L1PA2 LINE L1 6008 6150 -5 187 267 33 17 chr6 113098665 113098725 -69316517 - MIR SINE MIR -66 142 82 2250 73 31 0 chr6 113099263 113099550 -69315692 - AluSp SINE Alu -17 296 1 1310 238 30 21 chr6 113099614 113099942 -69315300 + L1MC1 LINE L1 5 335 -6091 906 157 0 0 chr6 113099942 113100076 -69315166 + AluJb SINE Alu 1 134 -178 5749 123 46 147 chr6 113100077 113101244 -69313998 + L1MC1 LINE L1 329 1450 -4976 654 179 0 18 chr6 113101244 113101356 -69313886 + FRAM SINE Alu 62 171 -5 5749 123 46 147 chr6 113101356 113101496 -69313746 + L1MC1 LINE L1 1450 1603 -4823 901 157 0 22 chr6 113101496 113101630 -69313612 + FLAM_A SINE Alu 1 131 -2 7476 216 33 48 chr6 113101632 113101964 -69313278 + L1MC1 LINE L1 3564 3899 -2527 2459 80 3 0 chr6 113101964 113102263 -69312979 - AluSc SINE Alu -9 300 1 7476 216 33 48 chr6 113102263 113103191 -69312051 + L1MC1 LINE L1 3899 4781 -1645 2018 150 10 3 chr6 113103191 113103498 -69311744 + AluJb SINE Alu 1 309 -3 7476 216 33 48 chr6 113103498 113104381 -69310861 + L1MC1 LINE L1 4781 5676 -750 1178 108 0 0 chr6 113104383 113104540 -69310702 + AluSg/x SINE Alu 135 291 -19 5582 130 42 3 chr6 113104540 113105449 -69309793 + L1MC1 LINE L1 5670 6613 0 526 170 50 0 chr6 113105820 113105920 -69309322 - L1PB4 LINE L1 -2 6154 6050 60 37 0 0 chr6 113105938 113106019 -69309223 + AT_rich Low_complexity Low_complexity 1 81 0 2018 145 0 7 chr6 113106209 113106506 -69308736 + AluSx SINE Alu 1 295 -17 389 233 108 27 chr6 113106975 113107125 -69308117 + MER5A DNA MER1_type 1 164 -18 224 259 172 46 chr6 113107164 113107338 -69307904 - L2 LINE L2 -496 2818 2623 28 0 0 0 chr6 113107503 113107531 -69307711 + AT_rich Low_complexity Low_complexity 1 28 0 1063 166 6 0 chr6 113107622 113107797 -69307445 + L1MC4a LINE L1 7229 7404 -404 2112 103 0 3 chr6 113107798 113108080 -69307162 + AluSq SINE Alu 1 281 -32 279 0 0 0 chr6 113108080 113108111 -69307131 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2785 122 141 27 chr6 113108111 113108705 -69306537 - Tigger3b DNA MER2_type -556 676 1 1225 220 57 13 chr6 113109645 113109959 -69305283 - L1MB8 LINE L1 -22 6156 5829 454 261 117 11 chr6 113110145 113110409 -69304833 + L2 LINE L2 2843 3134 -179 2001 184 11 22 chr6 113110477 113110846 -69304396 - MLT1A1 LTR MaLR 0 365 1 2118 120 0 7 chr6 113110862 113111154 -69304088 + AluSq SINE Alu 1 290 -23 218 303 81 0 chr6 113111228 113111327 -69303915 + MIR SINE MIR 132 238 -24 212 188 21 21 chr6 113111349 113111397 -69303845 + L2 LINE L2 3180 3227 -86 2393 130 37 7 chr6 113111906 113112403 -69302839 + L1MA4 LINE L1 5588 6142 -158 22 0 0 0 chr6 113113331 113113353 -69301889 + AT_rich Low_complexity Low_complexity 1 22 0 217 333 94 0 chr6 113115289 113115385 -69299857 + MIR3 SINE MIR 81 185 -23 943 146 6 41 chr6 113116521 113116692 -69298550 + AluSg/x SINE Alu 128 292 -18 1413 158 140 38 chr6 113116981 113117246 -69297996 - AluJb SINE Alu -9 293 2 2001 199 150 88 chr6 113117348 113117927 -69297315 - MLT1E2 LTR MaLR -9 617 1 2150 129 0 0 chr6 113122166 113122452 -69292790 - AluSx SINE Alu -24 288 3 2162 99 0 20 chr6 113124743 113125035 -69290207 - AluSq SINE Alu -27 286 1 2366 141 59 12 chr6 113127318 113127721 -69287521 - Tigger1 DNA MER2_type 0 2418 1997 2801 91 98 7 chr6 113127721 113128128 -69287114 + MLT2A1 LTR ERVL 1 444 0 12163 127 51 4 chr6 113128128 113130038 -69285204 - Tigger1 DNA MER2_type -417 2001 1 196 339 16 0 chr6 113130268 113130330 -69284912 + L2 LINE L2 329 391 -2923 347 314 35 64 chr6 113130509 113130681 -69284561 - MER5A DNA MER1_type 0 189 23 186 354 67 17 chr6 113130758 113130936 -69284306 + L2 LINE L2 606 792 -2522 353 279 103 37 chr6 113130939 113131075 -69284167 - L2 LINE L2 -16 3256 3112 367 327 83 29 chr6 113132152 113132596 -69282646 - L1MC/D LINE L1 -307 5814 5405 251 263 216 30 chr6 113132728 113133029 -69282213 - L1MC/D LINE L1 -908 5238 4882 266 259 51 120 chr6 113135621 113135695 -69279547 - MIR3 SINE MIR -46 162 103 1976 155 0 0 chr6 113135695 113135986 -69279256 + AluSx SINE Alu 1 291 -21 266 259 51 120 chr6 113135986 113136069 -69279173 - MIR3 SINE MIR -105 103 16 2198 109 0 10 chr6 113136279 113136573 -69278669 - AluSc SINE Alu -16 293 3 186 139 0 0 chr6 113138721 113138757 -69276485 + L2 LINE L2 3274 3309 -4 405 0 0 0 chr6 113139491 113139536 -69275706 + (TATG)n Simple_repeat Simple_repeat 3 47 0 1004 169 55 6 chr6 113139547 113139730 -69275512 - AluJo SINE Alu -116 196 5 367 228 101 74 chr6 113139952 113140101 -69275141 - L3 LINE CR1 -56 1521 1369 244 195 0 65 chr6 113140332 113140409 -69274833 - MIR SINE MIR -10 252 181 329 274 0 0 chr6 113140425 113140487 -69274755 - MER2 DNA MER2_type 0 345 284 1094 212 0 0 chr6 113140539 113140732 -69274510 - MER2 DNA MER2_type -136 209 17 489 293 7 20 chr6 113140734 113140884 -69274358 - MIR SINE MIR -104 158 11 1952 139 0 20 chr6 113142218 113142521 -69272721 - AluJo SINE Alu -15 297 1 180 125 0 0 chr6 113143115 113143147 -69272095 + (CCA)n Simple_repeat Simple_repeat 2 33 0 2164 126 0 0 chr6 113143997 113144291 -69270951 - AluSx SINE Alu -18 294 1 284 225 275 36 chr6 113145149 113145513 -69269729 - L2 LINE L2 -50 3263 2813 1212 103 0 0 chr6 113145789 113145944 -69269298 - AluSg/x SINE Alu -73 239 85 186 103 0 0 chr6 113145953 113145982 -69269260 + (T)n Simple_repeat Simple_repeat 1 29 0 27 29 0 0 chr6 113146581 113146615 -69268627 + AT_rich Low_complexity Low_complexity 1 34 0 1840 299 115 26 chr6 113146751 113148130 -69267112 + L2 LINE L2 1813 3312 -1 15101 120 52 21 chr6 113150350 113151529 -69263713 - Tigger1 DNA MER2_type 0 2418 1277 1563 194 6 38 chr6 113151529 113151849 -69263393 - AluJb SINE Alu -2 310 1 15101 120 52 21 chr6 113151849 113153014 -69262228 - Tigger1 DNA MER2_type -1141 1277 1 28 95 0 0 chr6 113153097 113153181 -69262061 + AT_rich Low_complexity Low_complexity 1 84 0 1531 181 47 40 chr6 113153338 113153636 -69261606 - AluJo SINE Alu -12 300 1 444 321 13 25 chr6 113153699 113153858 -69261384 + MIR3 SINE MIR 16 172 -36 516 257 76 41 chr6 113154478 113154649 -69260593 + MLT1J LTR MaLR 1 177 -334 383 225 56 0 chr6 113158733 113158822 -69256420 - MIR SINE MIR -76 186 93 674 173 115 0 chr6 113158934 113159073 -69256169 - MER58B DNA MER1_type -6 335 181 211 149 64 21 chr6 113159571 113159618 -69255624 - L2 LINE L2 0 3313 3265 220 274 71 35 chr6 113159835 113159948 -69255294 + L2 LINE L2 3193 3309 -4 203 408 92 0 chr6 113212279 113212409 -69202833 - L2 LINE L2 -8 3264 3123 1039 307 50 12 chr6 113212749 113213150 -69202092 + LTR16A LTR ERVL 35 450 0 247 150 33 17 chr6 113214076 113214136 -69201106 + (CATA)n Simple_repeat Simple_repeat 3 63 0 2164 113 0 0 chr6 113215329 113215620 -69199622 + AluSx SINE Alu 1 291 -21 204 262 33 16 chr6 113217861 113217922 -69197320 - MIR SINE MIR -73 135 74 2031 129 4 0 chr6 113218118 113218396 -69196846 + AluSg SINE Alu 1 279 -31 239 252 8 73 chr6 113218751 113218874 -69196368 - 7SK RNA RNA -71 122 8 2120 101 0 7 chr6 113219123 113219439 -69195803 + AluSx SINE Alu 1 314 0 1486 159 58 52 chr6 113219775 113220139 -69195103 + L1MB3 LINE L1 5682 6047 -136 448 152 40 50 chr6 113220248 113220347 -69194895 + L1MB3 LINE L1 6032 6129 -54 274 94 0 57 chr6 113220372 113220425 -69194817 + L1MB4 LINE L1 6112 6161 -19 2342 15 8 4 chr6 113220696 113220961 -69194281 + AluYa5 SINE Alu 39 304 -7 931 203 72 29 chr6 113221025 113221232 -69194010 - MER58A DNA MER1_type -8 216 1 2209 220 69 15 chr6 113222327 113223046 -69192196 + L1MC1 LINE L1 4219 5036 -1110 744 132 164 0 chr6 113223045 113223077 -69192165 + L1MC1 LINE L1 5260 5285 -1048 * 255 31 0 0 chr6 113223077 113223109 -69192133 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 744 132 164 0 chr6 113223109 113223235 -69192007 + L1MC1 LINE L1 5285 5444 -889 1962 105 8 0 chr6 113223236 113223493 -69191749 + AluSx SINE Alu 1 259 -53 22 35 0 0 chr6 113223493 113223522 -69191720 + AT_rich Low_complexity Low_complexity 1 29 0 265 49 0 0 chr6 113223548 113223589 -69191653 + AluSx SINE Alu 259 299 0 5192 163 22 12 chr6 113223582 113224479 -69190763 + L1MC1 LINE L1 5428 6333 0 2204 99 20 13 chr6 113224489 113224793 -69190449 + AluSg SINE Alu 1 306 -4 199 295 63 0 chr6 113225575 113225670 -69189572 + MIR SINE MIR 64 164 -98 730 224 104 53 chr6 113226125 113226509 -69188733 + MLT1H LTR MaLR 102 549 0 388 345 52 26 chr6 113226939 113227130 -69188112 + MIR3 SINE MIR 3 198 -10 549 0 0 0 chr6 113227897 113227958 -69187284 + (TA)n Simple_repeat Simple_repeat 1 61 0 1040 244 9 14 chr6 113229908 113230129 -69185113 - MER58A DNA MER1_type -4 220 1 730 237 79 6 chr6 113231027 113231234 -69184008 - MIR SINE MIR -60 202 1 2038 132 7 3 chr6 113231441 113231745 -69183497 + AluSx SINE Alu 1 305 -7 549 217 184 7 chr6 113232457 113232609 -69182633 + MER58C DNA MER1_type 32 210 -5 199 329 49 12 chr6 113232765 113232847 -69182395 - MIR SINE MIR -115 147 63 216 259 47 24 chr6 113233020 113233105 -69182137 - L2 LINE L2 -47 3266 3180 504 254 25 0 chr6 113233181 113233299 -69181943 + MER5C DNA MER1_type 4 124 -200 518 288 146 16 chr6 113233396 113233817 -69181425 - L2 LINE L2 -225 3088 2599 206 254 18 0 chr6 113234684 113234739 -69180503 + A-rich Low_complexity Low_complexity 5 60 0 905 133 0 14 chr6 113235023 113235166 -69180076 + L1MB1 LINE L1 6028 6168 0 1899 135 151 8 chr6 113235296 113235535 -69179707 + L1MA8 LINE L1 5870 6073 -218 387 0 0 0 chr6 113235535 113235578 -69179664 + (CA)n Simple_repeat Simple_repeat 2 44 0 1899 135 151 8 chr6 113235578 113235703 -69179539 + L1MA8 LINE L1 6073 6288 -3 406 290 69 48 chr6 113238053 113238284 -69176958 + MLT1K LTR MaLR 346 581 -7 24 0 0 0 chr6 113238453 113238477 -69176765 + AT_rich Low_complexity Low_complexity 1 24 0 245 294 20 0 chr6 113238688 113238790 -69176452 + L1M4 LINE L1 3342 3445 -2701 430 297 86 35 chr6 113238958 113239102 -69176140 - MIR SINE MIR -10 252 90 2248 107 3 0 chr6 113239102 113239400 -69175842 + AluSg SINE Alu 1 299 -11 430 297 86 35 chr6 113239400 113239487 -69175755 - MIR SINE MIR -172 90 9 206 339 15 0 chr6 113240045 113240110 -69175132 - MER5A DNA MER1_type -88 101 36 2010 125 16 29 chr6 113240193 113240504 -69174738 + AluSx SINE Alu 1 307 -5 1410 86 19 164 chr6 113240770 113241039 -69174203 + MER30 DNA MER1_type 1 230 0 239 377 82 0 chr6 113242502 113242648 -69172594 - MIR3 SINE MIR -19 189 32 185 81 0 54 chr6 113243147 113243184 -69172058 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 234 0 0 0 chr6 113244296 113244322 -69170920 + (CA)n Simple_repeat Simple_repeat 2 27 0 2003 129 6 35 chr6 113244350 113244667 -69170575 + AluSx SINE Alu 1 308 -4 779 191 0 0 chr6 113244667 113244782 -69170460 - AluJb SINE Alu -196 116 2 2291 82 20 0 chr6 113245305 113245599 -69169643 - AluY SINE Alu -11 300 1 2263 117 0 0 chr6 113245839 113246138 -69169104 - AluSx SINE Alu -13 299 1 620 136 152 0 chr6 113246840 113246972 -69168270 - MER33 DNA MER1_type 0 363 212 845 179 29 11 chr6 113247151 113247329 -69167913 - MER33 DNA MER1_type -255 69 1 265 280 154 7 chr6 113247541 113247684 -69167558 + L1P LINE L1 4077 4240 -1906 736 125 227 0 chr6 113247916 113248044 -69167198 + FRAM SINE Alu 1 154 -22 352 313 66 0 chr6 113248220 113248386 -69166856 + L1ME4a LINE L1 5709 5885 -236 31 26 0 0 chr6 113248408 113248446 -69166796 + AT_rich Low_complexity Low_complexity 1 38 0 681 291 45 0 chr6 113248618 113248817 -69166425 + MIR SINE MIR 44 251 -11 2277 96 0 7 chr6 113250162 113250463 -69164779 + AluSx SINE Alu 1 299 -13 1980 138 3 3 chr6 113252275 113252566 -69162676 + AluSx SINE Alu 5 295 -17 180 0 0 0 chr6 113254835 113254855 -69160387 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 367 320 39 13 chr6 113254876 113255022 -69160220 - MIR SINE MIR -66 142 19 372 22 0 0 chr6 113255864 113255909 -69159333 + (CA)n Simple_repeat Simple_repeat 1 45 0 336 276 136 76 chr6 113256199 113256605 -69158637 - L1M2 LINE L1 -5770 1079 650 29 0 0 0 chr6 113256657 113256686 -69158556 + GC_rich Low_complexity Low_complexity 1 29 0 437 239 75 22 chr6 113257662 113257796 -69157446 - 7SLRNA srpRNA srpRNA -140 180 40 303 272 139 37 chr6 113257948 113258096 -69157146 - MIR SINE MIR -42 166 1 207 306 72 36 chr6 113258465 113258576 -69156666 - MIR SINE MIR -119 143 29 461 291 34 0 chr6 113258978 113259095 -69156147 + MER91A DNA MER1_type 36 156 -40 252 254 55 0 chr6 113259098 113259153 -69156089 + MER91A DNA MER1_type 119 176 -20 280 348 152 0 chr6 113259382 113259540 -69155702 + MIR3 SINE MIR 20 201 -7 2340 110 7 0 chr6 113260600 113260910 -69154332 - AluSx SINE Alu 0 312 1 198 0 0 0 chr6 113261656 113261678 -69153564 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 206 318 79 0 chr6 113261678 113261741 -69153501 - MER91C DNA MER1_type -42 98 31 2658 159 29 0 chr6 113262349 113262765 -69152477 - MSTA LTR MaLR 0 428 1 490 145 12 0 chr6 113262765 113262848 -69152394 - MSTA-int LTR MaLR 0 1651 1568 1570 196 4 11 chr6 113262851 113263127 -69152115 - AluJb SINE Alu -38 274 1 1861 150 3 0 chr6 113263128 113263414 -69151828 - MSTA-int LTR MaLR -680 971 685 * 14779 173 33 21 chr6 113263412 113266255 -69148987 + L1M1 LINE L1 1268 4201 -3364 2288 103 0 0 chr6 113266255 113266547 -69148695 + AluSc SINE Alu 1 292 -17 14779 173 33 21 chr6 113266547 113268428 -69146814 + L1M1 LINE L1 4201 6059 -1506 39294 82 7 6 chr6 113268439 113274576 -69140666 + L1PA5 LINE L1 11 6154 0 1008 270 23 44 chr6 113274576 113274673 -69140569 + L1ME LINE L1 5385 5482 -688 2425 72 7 0 chr6 113274673 113274980 -69140262 + AluY SINE Alu 1 309 -2 1008 270 23 44 chr6 113274980 113275315 -69139927 + L1ME LINE L1 5482 5808 -362 519 172 0 0 chr6 113275487 113275574 -69139668 + Tigger5 DNA MER2_type 2237 2323 0 429 141 33 11 chr6 113275582 113275674 -69139568 - HAL1b LINE L1 -257 1091 998 2409 97 0 0 chr6 113275674 113275974 -69139268 + AluSc SINE Alu 1 300 -9 276 77 0 0 chr6 113277650 113277689 -69137553 + (TATTG)n Simple_repeat Simple_repeat 4 42 0 254 103 0 0 chr6 113277689 113277728 -69137514 - Alu SINE Alu -22 280 242 21 0 0 0 chr6 113278425 113278446 -69136796 + AT_rich Low_complexity Low_complexity 1 21 0 5483 84 1 8 chr6 113278565 113279360 -69135882 + L1PA10 LINE L1 5388 6168 0 1279 159 180 8 chr6 113279898 113280143 -69135099 + AluJb SINE Alu 1 287 -15 386 326 134 58 chr6 113280338 113280703 -69134539 - L2 LINE L2 -2 3270 2865 2717 88 8 11 chr6 113280703 113281079 -69134163 - THE1C LTR MaLR 0 375 1 386 326 134 58 chr6 113281079 113281146 -69134096 - L2 LINE L2 -407 2865 2805 766 247 100 51 chr6 113281263 113281677 -69133565 - MLT1J1 LTR MaLR -15 427 1 22 35 0 0 chr6 113282775 113282804 -69132438 + AT_rich Low_complexity Low_complexity 1 29 0 742 267 92 40 chr6 113283182 113283485 -69131757 - MLT1I LTR MaLR -5 404 86 200 265 11 0 chr6 113283756 113283812 -69131430 - MIR SINE MIR -63 145 106 353 274 105 8 chr6 113284754 113284878 -69130364 + MIR3 SINE MIR 45 180 -28 1943 131 10 7 chr6 113285338 113285629 -69129613 - AluJo SINE Alu -12 300 9 286 222 0 0 chr6 113286123 113286177 -69129065 + L2 LINE L2 2262 2315 -999 21 36 0 0 chr6 113286282 113286310 -69128932 + AT_rich Low_complexity Low_complexity 1 28 0 200 242 136 15 chr6 113286474 113286540 -69128702 - MIR3 SINE MIR -52 156 83 848 209 71 5 chr6 113286650 113286846 -69128396 - MER3 DNA MER1_type 0 209 1 1331 211 54 30 chr6 113287528 113287864 -69127378 - MER2 DNA MER2_type 0 344 1 3054 166 18 15 chr6 113289042 113289651 -69125591 - L1MC3 LINE L1 -46 7739 7129 219 309 0 79 chr6 113290458 113290584 -69124658 - L2 LINE L2 -35 3237 3122 248 214 182 31 chr6 113291191 113291350 -69123892 - L1ME LINE L1 -213 5908 5726 2288 109 0 6 chr6 113291834 113292147 -69123095 - AluSq SINE Alu -2 311 1 219 36 0 0 chr6 113293688 113293716 -69121526 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 204 67 0 0 chr6 113293960 113293990 -69121252 + (CA)n Simple_repeat Simple_repeat 2 31 0 251 327 145 14 chr6 113294101 113294315 -69120927 + L3b LINE CR1 1223 1464 -119 2145 134 0 0 chr6 113294355 113294660 -69120582 - AluSx SINE Alu -4 308 4 26 64 0 0 chr6 113294736 113294783 -69120459 + AT_rich Low_complexity Low_complexity 1 47 0 1994 218 30 41 chr6 113295435 113295944 -69119298 + MLT1D LTR MaLR 3 505 0 531 45 0 0 chr6 113296270 113296336 -69118906 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1885 153 0 39 chr6 113296336 113296643 -69118599 - AluJb SINE Alu -11 301 7 8703 99 11 2 chr6 113296918 113298196 -69117046 - HSMAR2 DNA Mariner 0 1302 13 712 205 109 0 chr6 113298197 113298353 -69116889 - FAM SINE Alu -2 173 1 308 189 0 54 chr6 113298353 113298427 -69116815 - AluJo SINE Alu -166 136 73 202 238 0 24 chr6 113298463 113298505 -69116737 + L2 LINE L2 3205 3245 -27 361 296 137 6 chr6 113298512 113298687 -69116555 + MIR SINE MIR 16 212 -50 403 314 166 9 chr6 113298840 113299063 -69116179 + L3b LINE CR1 1178 1435 -148 2537 50 0 0 chr6 113300648 113300951 -69114291 + AluY SINE Alu 1 303 -8 652 258 58 79 chr6 113301044 113301163 -69114079 + L2 LINE L2 2781 2901 -412 1280 178 146 4 chr6 113301163 113301453 -69113789 - AluJo SINE Alu 0 325 1 652 258 58 79 chr6 113301453 113301683 -69113559 + L2 LINE L2 2901 3125 -188 333 271 24 0 chr6 113301691 113301776 -69113466 + L2 LINE L2 3227 3313 0 2249 102 3 0 chr6 113302402 113302696 -69112546 - AluSx SINE Alu -17 295 1 604 289 63 46 chr6 113302891 113303348 -69111894 - MLT1J LTR MaLR -44 467 3 662 308 151 11 chr6 113303408 113303886 -69111356 + LTR67 LTR ERVL 3 547 -10 420 363 75 21 chr6 113303970 113304601 -69110641 + HERVL LTR ERVL 4681 5345 -309 1234 264 45 3 chr6 113304718 113305071 -69110171 + LTR16C LTR ERVL 5 372 -119 1528 284 70 13 chr6 113305082 113305550 -69109692 + MER115 DNA AcHobo 170 664 -29 192 77 0 0 chr6 113307340 113307366 -69107876 + (TC)n Simple_repeat Simple_repeat 1 26 0 309 278 52 0 chr6 113307508 113307605 -69107637 - MER117 DNA MER1_type -53 144 43 339 258 94 8 chr6 113307624 113307752 -69107490 - L3 LINE CR1 -286 1291 1153 1441 210 25 89 chr6 113307870 113308462 -69106780 - MER34 LTR ERV1 0 542 14 1917 151 3 3 chr6 113308613 113308904 -69106338 + AluSx SINE Alu 1 291 -21 23 33 0 0 chr6 113309319 113309349 -69105893 + AT_rich Low_complexity Low_complexity 1 30 0 365 278 13 40 chr6 113309475 113309626 -69105616 - L3 LINE CR1 -774 803 657 254 180 16 0 chr6 113310427 113310488 -69104754 + (TA)n Simple_repeat Simple_repeat 2 63 0 288 0 0 0 chr6 113310662 113310694 -69104548 + (TG)n Simple_repeat Simple_repeat 2 33 0 196 389 101 0 chr6 113310764 113310903 -69104339 + MIR SINE MIR 3 155 -107 496 201 169 45 chr6 113312920 113313074 -69102168 - MIR SINE MIR -11 251 79 396 344 11 43 chr6 113313167 113313353 -69101889 - MIR3 SINE MIR -15 193 14 301 254 79 16 chr6 113314018 113314095 -69101147 + MIR SINE MIR 125 214 -48 3674 156 117 37 chr6 113314095 113314857 -69100385 + LTR1B LTR ERV1 1 823 -3 301 254 79 16 chr6 113314857 113314905 -69100337 + MIR SINE MIR 214 258 -4 2256 143 16 14 chr6 113315014 113315440 -69099802 - L1MD1 LINE L1 0 6242 5816 27 49 0 0 chr6 113315558 113315599 -69099643 + AT_rich Low_complexity Low_complexity 1 41 0 880 257 4 40 chr6 113316262 113316469 -69098773 - L1ME1 LINE L1 -101 6065 5879 1646 173 40 0 chr6 113316469 113316747 -69098495 - AluJb SINE Alu -22 290 2 880 257 4 40 chr6 113316747 113316817 -69098425 - L1ME1 LINE L1 -287 5879 5808 1900 150 4 4 chr6 113316849 113317129 -69098113 + AluSx SINE Alu 3 282 -30 4823 259 126 21 chr6 113317155 113319101 -69096141 - L2 LINE L2 -12 3301 1155 279 240 211 19 chr6 113319156 113319364 -69095878 - MLT1H1 LTR MaLR 0 555 308 450 285 162 54 chr6 113319695 113320176 -69095066 - MLT1F LTR MaLR -8 534 2 615 273 84 8 chr6 113320178 113320427 -69094815 - L2 LINE L2 -2208 1106 839 1700 112 33 20 chr6 113320434 113320738 -69094504 + L1MA8 LINE L1 5980 6287 -4 249 222 0 0 chr6 113320775 113320829 -69094413 - L2 LINE L2 -2461 853 800 397 298 7 53 chr6 113320845 113320996 -69094246 + MER5B DNA MER1_type 32 175 -3 474 277 27 34 chr6 113321012 113321160 -69094082 - MIR SINE MIR -12 250 104 221 340 43 106 chr6 113321800 113322082 -69093160 + L2 LINE L2 3008 3271 -1 385 325 77 21 chr6 113322148 113322342 -69092900 - MIR SINE MIR -56 206 2 183 222 0 0 chr6 113323175 113323220 -69092022 + T-rich Low_complexity Low_complexity 1 45 0 384 320 72 5 chr6 113323387 113323581 -69091661 + MIR SINE MIR 1 212 -50 22 0 0 0 chr6 113324531 113324553 -69090689 + AT_rich Low_complexity Low_complexity 1 22 0 35 54 0 0 chr6 113325137 113325193 -69090049 + AT_rich Low_complexity Low_complexity 1 56 0 224 313 30 50 chr6 113325704 113325803 -69089439 - MIR SINE MIR -92 116 20 180 317 0 0 chr6 113325954 113325995 -69089247 + L2 LINE L2 3251 3291 -22 192 374 50 10 chr6 113326052 113326151 -69089091 + L2 LINE L2 3140 3242 -30 2461 152 58 4 chr6 113326219 113326681 -69088561 + MLT1D LTR MaLR 1 487 -18 2142 116 23 0 chr6 113326715 113327016 -69088226 - AluSx SINE Alu -4 308 1 189 0 0 0 chr6 113327531 113327552 -69087690 + (TG)n Simple_repeat Simple_repeat 2 22 0 1725 128 27 0 chr6 113328381 113328678 -69086564 - L1MB3 LINE L1 0 6183 5879 5500 136 45 53 chr6 113328712 113330851 -69084391 - L1MA7 LINE L1 0 6291 4174 660 188 0 0 chr6 113330855 113330967 -69084275 - AluJb SINE Alu -7 305 194 248 326 112 10 chr6 113331027 113331125 -69084117 + MLT1K LTR MaLR 140 247 -341 292 308 0 8 chr6 113331206 113331326 -69083916 + MLT1K LTR MaLR 470 588 0 1294 230 37 49 chr6 113331842 113332273 -69082969 + MLT1C LTR MaLR 34 459 -8 2222 111 10 0 chr6 113332334 113332631 -69082611 - AluSx SINE Alu -8 304 5 2373 93 6 0 chr6 113334263 113334574 -69080668 + AluSp SINE Alu 1 313 0 226 167 33 0 chr6 113335183 113335243 -69079999 + T-rich Low_complexity Low_complexity 4 65 0 249 33 0 0 chr6 113339199 113339229 -69076013 + (CA)n Simple_repeat Simple_repeat 2 31 0 34 24 0 0 chr6 113339683 113339724 -69075518 + AT_rich Low_complexity Low_complexity 1 41 0 837 154 0 0 chr6 113339725 113339848 -69075394 - FLAM_C SINE Alu -20 123 1 2424 143 12 2 chr6 113340318 113340717 -69074525 - MER57A LTR ERV1 0 403 1 2251 120 0 0 chr6 113340958 113341257 -69073985 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr6 113341805 113341828 -69073414 + AT_rich Low_complexity Low_complexity 1 23 0 2224 117 3 0 chr6 113343574 113343874 -69071368 + AluSx SINE Alu 1 301 -11 1597 204 0 25 chr6 113344286 113344605 -69070637 - AluJb SINE Alu -1 311 1 225 0 0 0 chr6 113344796 113344821 -69070421 + (TA)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr6 113344821 113344841 -69070401 + (T)n Simple_repeat Simple_repeat 1 20 0 228 86 0 0 chr6 113347024 113347059 -69068183 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 963 264 47 8 chr6 113347537 113347772 -69067470 - MIR SINE MIR -15 247 4 188 325 113 26 chr6 113348022 113348253 -69066989 + L2 LINE L2 2235 2485 -829 181 0 69 0 chr6 113348471 113348500 -69066742 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 291 276 103 0 chr6 113348500 113348587 -69066655 - L2 LINE L2 -20 3293 3198 360 303 182 39 chr6 113349328 113349763 -69065479 - L2 LINE L2 0 3313 2817 444 224 0 0 chr6 113350353 113350438 -69064804 + FRAM/FAM SINE Alu 1 84 -92 205 273 0 0 chr6 113350462 113350506 -69064736 + L2 LINE L2 3251 3294 -19 192 340 165 0 chr6 113350528 113350631 -69064611 + MIR3 SINE MIR 79 198 -10 635 271 133 14 chr6 113350870 113351232 -69064010 + L1ME3A LINE L1 5482 5886 -284 26 50 0 0 chr6 113351545 113351585 -69063657 + AT_rich Low_complexity Low_complexity 1 40 0 2363 81 0 0 chr6 113351772 113352067 -69063175 - AluSc SINE Alu -14 295 1 465 250 103 43 chr6 113355742 113355926 -69059316 - MIR SINE MIR -56 206 12 435 306 25 56 chr6 113356055 113356215 -69059027 - L2 LINE L2 0 3272 3118 303 271 75 37 chr6 113357502 113357609 -69057633 - L2 LINE L2 -1 3271 3161 510 240 180 7 chr6 113359163 113359313 -69055929 - MER5A DNA MER1_type 0 189 14 197 292 31 0 chr6 113359334 113359399 -69055843 - L2 LINE L2 -22 3291 3225 1768 126 0 30 chr6 113360193 113360456 -69054786 + AluSq SINE Alu 1 255 -58 915 208 82 5 chr6 113360644 113360851 -69054391 - MER58A DNA MER1_type 0 224 2 318 50 0 0 chr6 113362989 113363029 -69052213 + (TG)n Simple_repeat Simple_repeat 1 40 0 184 263 92 26 chr6 113364217 113364293 -69050949 + L3 LINE CR1 839 919 -658 213 94 0 0 chr6 113364303 113364335 -69050907 + (TG)n Simple_repeat Simple_repeat 2 33 0 2089 122 13 10 chr6 113365316 113365627 -69049615 - AluSx SINE Alu 0 312 1 186 259 86 62 chr6 113366313 113366394 -69048848 - MER5B DNA MER1_type -29 149 67 283 303 53 53 chr6 113366584 113366716 -69048526 - MIR3 SINE MIR -63 145 14 1115 301 139 35 chr6 113368432 113368984 -69046258 + L2 LINE L2 123 799 -2515 1664 161 73 0 chr6 113368984 113369257 -69045985 - AluJb SINE Alu -19 293 1 1115 301 139 35 chr6 113369257 113369564 -69045678 + L2 LINE L2 799 1072 -2242 954 204 84 28 chr6 113369570 113369855 -69045387 + MLT1C LTR MaLR 6 306 -161 778 267 219 20 chr6 113369859 113370260 -69044982 + L2 LINE L2 1742 2222 -1092 6232 70 21 9 chr6 113370260 113371165 -69044077 + L1MA1 LINE L1 5381 6296 -6 1550 291 92 58 chr6 113371232 113372147 -69043095 + L2 LINE L2 2207 3156 -157 4296 56 4 11 chr6 113372147 113372700 -69042542 - L1PA10 LINE L1 -2 6166 5618 1550 291 92 58 chr6 113372700 113372859 -69042383 + L2 LINE L2 3156 3308 -5 382 275 45 34 chr6 113372911 113373089 -69042153 - MIR SINE MIR -2 260 81 228 342 13 13 chr6 113373270 113373346 -69041896 - MIR SINE MIR -160 102 27 477 316 119 54 chr6 113373487 113373841 -69041401 + L1MEd LINE L1 105 481 -5638 298 366 33 16 chr6 113373879 113374062 -69041180 + L1MEd LINE L1 540 725 -5394 2404 84 0 3 chr6 113374900 113375198 -69040044 - AluSq SINE Alu -16 297 1 2063 88 0 4 chr6 113375254 113375516 -69039726 - AluSq SINE Alu -52 261 1 360 281 92 26 chr6 113377285 113377438 -69037804 - L2 LINE L2 -21 3292 3130 439 323 67 91 chr6 113377743 113378328 -69036914 - L2 LINE L2 -539 2775 2205 242 204 0 0 chr6 113379166 113379215 -69036027 + L2 LINE L2 3264 3312 -1 317 303 34 79 chr6 113379325 113379383 -69035859 + MER5B DNA MER1_type 3 62 -116 1120 181 206 4 chr6 113379383 113379631 -69035611 + AluJo SINE Alu 2 299 -3 317 303 34 79 chr6 113379631 113379750 -69035492 + MER5B DNA MER1_type 62 172 -6 519 61 0 0 chr6 113380210 113380276 -69034966 - L1P4 LINE L1 -577 5586 5521 6458 82 16 3 chr6 113380566 113382042 -69033200 + L1PA13 LINE L1 4675 6163 0 429 310 43 0 chr6 113383147 113383331 -69031911 - LTR33 LTR ERVL -27 494 303 361 282 99 8 chr6 113383445 113383576 -69031666 - LTR33 LTR ERVL -373 148 6 567 254 164 47 chr6 113383679 113383911 -69031331 + MIR SINE MIR 3 261 -1 537 306 53 0 chr6 113384667 113384837 -69030405 - MIR SINE MIR -10 252 74 524 354 167 32 chr6 113385206 113386147 -69029095 - L2 LINE L2 0 3272 2206 410 220 63 75 chr6 113386146 113386305 -69028937 - MIR SINE MIR -1 261 105 * 229 244 0 0 chr6 113386424 113386465 -69028777 - MIR SINE MIR -16 246 206 315 268 78 112 chr6 113386965 113387144 -69028098 - MIR SINE MIR -12 250 78 2361 88 0 3 chr6 113387740 113388046 -69027196 - AluSg SINE Alu -5 305 1 2221 112 0 7 chr6 113388236 113388540 -69026702 - AluSq SINE Alu -11 302 1 1753 158 13 16 chr6 113389243 113389547 -69025695 + AluJo SINE Alu 6 308 -4 2214 123 0 10 chr6 113391036 113391345 -69023897 + AluSx SINE Alu 1 306 -6 272 371 102 28 chr6 113391706 113391989 -69023253 + L2 LINE L2 2956 3259 -13 4820 64 0 0 chr6 113391989 113392599 -69022643 + L1PA8 LINE L1 5562 6171 -1 1743 178 0 14 chr6 113392959 113393252 -69021990 - AluJb SINE Alu -23 289 1 261 298 174 20 chr6 113393427 113393645 -69021597 + MIR SINE MIR 13 262 0 2608 174 13 38 chr6 113393698 113393748 -69021494 + MER21A-int LTR ERV1 3655 3705 -486 1725 161 7 29 chr6 113393748 113394058 -69021184 + AluSq SINE Alu 1 303 -10 2608 174 13 38 chr6 113394058 113394558 -69020684 + MER21A-int LTR ERV1 3705 4191 0 1384 141 54 23 chr6 113394558 113395010 -69020232 + MER21A LTR ERV1 1 486 -377 2566 43 0 13 chr6 113396047 113396352 -69018890 - AluY SINE Alu -10 301 1 226 274 116 27 chr6 113396449 113396595 -69018647 + MER103 DNA DNA 1 159 -7 310 265 39 20 chr6 113397690 113397792 -69017450 + MIR SINE MIR 104 207 -55 2251 86 3 7 chr6 113398044 113398336 -69016906 + AluSx SINE Alu 18 308 -4 341 250 146 0 chr6 113400681 113400777 -69014465 + MIR3 SINE MIR 78 187 -21 271 164 30 45 chr6 113401124 113401191 -69014051 + GA-rich Low_complexity Low_complexity 3 68 0 180 0 0 0 chr6 113401291 113401311 -69013931 + (TG)n Simple_repeat Simple_repeat 2 21 0 286 334 203 43 chr6 113401372 113401441 -69013801 + L2 LINE L2 1758 1815 -1499 2325 84 0 10 chr6 113401441 113401740 -69013502 - AluSg SINE Alu -14 296 1 286 334 203 43 chr6 113401740 113402173 -69013069 + L2 LINE L2 1815 2177 -1137 2487 50 3 0 chr6 113402173 113402471 -69012771 - AluY SINE Alu -12 299 1 286 334 203 43 chr6 113402471 113402867 -69012375 + L2 LINE L2 2177 2801 -513 305 271 110 25 chr6 113403574 113403607 -69011635 + L2 LINE L2 3138 3167 -105 2325 78 7 3 chr6 113403607 113403902 -69011340 - AluSg SINE Alu -13 297 2 305 271 110 25 chr6 113403902 113403986 -69011256 + L2 LINE L2 3167 3265 -7 220 315 0 0 chr6 113406972 113407045 -69008197 + (CAT)n Simple_repeat Simple_repeat 1 73 0 361 320 131 28 chr6 113407123 113407568 -69007674 - MLT1K LTR MaLR -6 609 92 321 178 0 27 chr6 113407651 113407724 -69007518 - LTR67 LTR ERVL -58 499 429 1162 193 57 21 chr6 113407734 113408014 -69007228 - MLT1C LTR MaLR 0 467 178 213 410 67 9 chr6 113408358 113408463 -69006779 + L2 LINE L2 3122 3232 -40 25 0 0 0 chr6 113408577 113408602 -69006640 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 113408901 113408923 -69006319 + AT_rich Low_complexity Low_complexity 1 22 0 4686 127 18 0 chr6 113409473 113410269 -69004973 - L1P LINE L1 -3077 3069 2260 1591 199 3 14 chr6 113410705 113410996 -69004246 - AluJo SINE Alu -24 288 1 2591 129 43 17 chr6 113411074 113411491 -69003751 - MSTC LTR MaLR 0 428 1 264 263 8 93 chr6 113411514 113411632 -69003610 - MER102b DNA MER1_type -1 340 233 245 295 148 33 chr6 113413827 113413949 -69001293 - MIR3 SINE MIR -46 162 27 4442 198 27 35 chr6 113414214 113414314 -69000928 + MER45B DNA AcHobo 5 104 -1477 1642 133 8 0 chr6 113414314 113414555 -69000687 - AluSp SINE Alu -21 292 50 4442 198 27 35 chr6 113414555 113415077 -69000165 + MER45B DNA AcHobo 104 618 -963 1793 167 16 13 chr6 113415077 113415382 -68999860 + AluJb SINE Alu 1 306 -6 4442 198 27 35 chr6 113415382 113415793 -68999449 + MER45B DNA AcHobo 618 1031 -9 1485 215 105 46 chr6 113415800 113416275 -68998967 + MLT1D LTR MaLR 3 505 0 2331 122 0 0 chr6 113417078 113417390 -68997852 - AluSx SINE Alu 0 312 1 204 298 48 48 chr6 113417420 113417504 -68997738 - L2 LINE L2 -44 3228 3145 195 42 0 0 chr6 113417550 113417574 -68997668 + (CA)n Simple_repeat Simple_repeat 2 25 0 216 347 176 43 chr6 113417700 113418452 -68996790 - L2 LINE L2 -338 2976 2125 2255 87 7 3 chr6 113418456 113418755 -68996487 - AluSg SINE Alu -10 300 1 2113 199 21 11 chr6 113418777 113419249 -68995993 - L1ME1 LINE L1 -262 5904 5428 318 50 0 0 chr6 113420347 113420387 -68994855 + (CA)n Simple_repeat Simple_repeat 2 41 0 492 313 20 7 chr6 113420615 113420762 -68994480 + MIR SINE MIR 20 168 -94 222 206 82 27 chr6 113422333 113422406 -68992836 - MIR3 SINE MIR -38 170 94 443 298 82 29 chr6 113423625 113423833 -68991409 + MIR SINE MIR 28 246 -16 404 276 59 35 chr6 113424363 113424533 -68990709 - MIR SINE MIR -60 202 29 1693 214 64 5 chr6 113425153 113425526 -68989716 - MSTD LTR MaLR -1 395 1 378 299 134 6 chr6 113425931 113426088 -68989154 + MIR SINE MIR 15 191 -71 1223 241 85 22 chr6 113426091 113426552 -68988690 - Charlie4a DNA MER1_type 0 508 19 204 234 0 0 chr6 113426587 113426634 -68988608 + MIR SINE MIR 203 249 -13 311 195 39 0 chr6 113426684 113426761 -68988481 - MER116 DNA Mariner 0 80 1 406 218 32 48 chr6 113427351 113427475 -68987767 + L2 LINE L2 3192 3313 0 1639 114 0 0 chr6 113427663 113427874 -68987368 + AluSq SINE Alu 1 211 -102 318 279 43 54 chr6 113428047 113428230 -68987012 - L1MC/D LINE L1 -899 5445 5290 232 264 80 40 chr6 113428405 113428530 -68986712 - L1MC/D LINE L1 -1116 5030 4901 312 238 82 33 chr6 113428639 113428761 -68986481 - L1MC/D LINE L1 -1433 4713 4586 187 283 0 0 chr6 113428762 113428808 -68986434 + MIR SINE MIR 206 251 -11 201 294 141 12 chr6 113428921 113429006 -68986236 + L2 LINE L2 3169 3264 -8 1380 320 103 31 chr6 113429676 113430659 -68984583 + L2 LINE L2 1806 2858 -456 279 345 13 96 chr6 113430717 113430946 -68984296 + L2 LINE L2 2967 3176 -96 1234 171 67 53 chr6 113430951 113431281 -68983961 - L1MC4a LINE L1 -6 7802 6010 25 31 0 0 chr6 113431281 113431313 -68983929 + AT_rich Low_complexity Low_complexity 1 32 0 423 0 0 0 chr6 113431313 113431360 -68983882 + (CA)n Simple_repeat Simple_repeat 2 48 0 2064 123 69 26 chr6 113431821 113432170 -68983072 - THE1B LTR MaLR 0 364 1 412 263 73 75 chr6 113432359 113432599 -68982643 + MIR SINE MIR 7 243 -19 233 170 0 38 chr6 113432599 113432652 -68982590 + GA-rich Low_complexity Low_complexity 1 51 0 1745 141 193 11 chr6 113432915 113433277 -68981965 - MSTA LTR MaLR 0 428 1 28 29 0 0 chr6 113434218 113434253 -68980989 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr6 113434413 113434451 -68980791 + AT_rich Low_complexity Low_complexity 1 38 0 284 323 0 0 chr6 113434458 113434523 -68980719 - MIR SINE MIR -84 124 60 613 37 0 0 chr6 113435487 113435568 -68979674 + AluYa5/8 SINE Alu 230 310 -1 239 282 129 0 chr6 113435686 113435771 -68979471 - L2 LINE L2 -8 3264 3169 239 243 9 84 chr6 113436420 113436527 -68978715 + MER90 LTR ERV1 469 567 -8 1415 208 29 35 chr6 113437043 113437389 -68977853 + MLT1F LTR MaLR 199 542 0 1595 243 104 32 chr6 113437703 113438249 -68976993 + MLT1E LTR MaLR 1 588 -5 28 86 0 0 chr6 113438258 113438328 -68976914 + AT_rich Low_complexity Low_complexity 1 70 0 2231 110 0 0 chr6 113438999 113439298 -68975944 + AluY SINE Alu 1 299 -12 351 0 0 0 chr6 113439624 113439663 -68975579 + (TG)n Simple_repeat Simple_repeat 1 39 0 1758 163 7 0 chr6 113439709 113439979 -68975263 - AluJb SINE Alu -40 272 1 225 0 0 0 chr6 113440298 113440323 -68974919 + (A)n Simple_repeat Simple_repeat 1 25 0 1170 76 0 19 chr6 113442558 113442716 -68972526 - AluSp/q SINE Alu 0 313 159 245 167 0 0 chr6 113442720 113442768 -68972474 + MADE1 DNA Mariner 33 80 0 2154 111 7 3 chr6 113443853 113444165 -68971077 + AluSx SINE Alu 1 313 0 565 290 122 25 chr6 113446008 113446246 -68968996 - MIR SINE MIR 0 262 2 21 0 0 0 chr6 113447986 113448007 -68967235 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 113448950 113448985 -68966257 + AT_rich Low_complexity Low_complexity 1 35 0 187 380 11 11 chr6 113449125 113449217 -68966025 - MIR SINE MIR -91 171 80 4180 152 20 77 chr6 113450167 113450195 -68965047 - L1MA9 LINE L1 -38 6274 6246 471 35 0 0 chr6 113450195 113450252 -68964990 + (TA)n Simple_repeat Simple_repeat 1 57 0 2355 81 7 0 chr6 113450252 113450550 -68964692 - AluSp SINE Alu -13 300 1 4180 152 20 77 chr6 113450550 113451026 -68964216 - L1MA9 LINE L1 -65 6247 5746 219 88 0 0 chr6 113451026 113451060 -68964182 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 4180 152 20 77 chr6 113451060 113451261 -68963981 - L1MA9 LINE L1 -566 5746 5634 1529 198 20 30 chr6 113451261 113451559 -68963683 - AluJo SINE Alu -17 295 1 4180 152 20 77 chr6 113451559 113451826 -68963416 - L1MA9 LINE L1 -678 5634 5354 419 269 22 40 chr6 113451961 113452132 -68963110 - MIR SINE MIR -54 208 42 21 0 0 0 chr6 113452526 113452547 -68962695 + AT_rich Low_complexity Low_complexity 1 21 0 404 67 17 0 chr6 113453235 113453295 -68961947 + (TG)n Simple_repeat Simple_repeat 2 62 0 237 132 0 0 chr6 113455557 113455595 -68959647 + (TA)n Simple_repeat Simple_repeat 2 39 0 25 31 0 0 chr6 113455678 113455710 -68959532 + AT_rich Low_complexity Low_complexity 1 32 0 555 29 0 0 chr6 113455863 113455932 -68959310 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 208 303 158 0 chr6 113456334 113456410 -68958832 + L2 LINE L2 3163 3250 -22 311 343 69 33 chr6 113458396 113458641 -68956601 + L2 LINE L2 2526 2779 -535 540 326 35 85 chr6 113458719 113458978 -68956264 + L2 LINE L2 2891 3124 -148 1349 221 106 3 chr6 113458978 113459309 -68955933 + MLT1A1 LTR MaLR 1 365 0 540 326 35 85 chr6 113459309 113459451 -68955791 + L2 LINE L2 3124 3272 0 24 53 0 0 chr6 113459587 113459625 -68955617 + AT_rich Low_complexity Low_complexity 1 38 0 459 281 18 0 chr6 113459625 113459739 -68955503 - MIR3 SINE MIR -23 185 70 1982 256 125 0 chr6 113459825 113460411 -68954831 - Zaphod DNA AcHobo -3371 660 2 303 309 22 65 chr6 113460579 113460718 -68954524 + MIR3 SINE MIR 13 145 -63 259 282 28 0 chr6 113461753 113461824 -68953418 + L2 LINE L2 3241 3313 0 26 50 0 0 chr6 113463388 113463428 -68951814 + AT_rich Low_complexity Low_complexity 1 40 0 1765 172 3 3 chr6 113463428 113463718 -68951524 + AluJb SINE Alu 1 290 -22 1734 53 97 0 chr6 113463754 113464001 -68951241 - L1MA1 LINE L1 0 6302 6032 2308 117 3 0 chr6 113464357 113464666 -68950576 + AluSx SINE Alu 1 310 -2 2361 100 3 0 chr6 113467036 113467346 -68947896 - AluSp SINE Alu -1 312 2 3602 102 2 6 chr6 113467840 113468367 -68946875 - HERVK11 LTR ERVK -7428 525 1 8660 53 6 0 chr6 113468367 113469432 -68945810 - MER11C LTR ERVK 0 1071 1 1867 157 33 43 chr6 113470108 113470502 -68944740 + MLT1B LTR MaLR 1 390 0 1745 142 0 19 chr6 113470567 113470834 -68944408 - AluSx SINE Alu -23 289 28 281 231 123 0 chr6 113470862 113470927 -68944315 + L2 LINE L2 3200 3272 0 25 31 0 0 chr6 113472409 113472441 -68942801 + AT_rich Low_complexity Low_complexity 1 32 0 299 274 68 34 chr6 113472670 113472816 -68942426 + MIR SINE MIR 85 235 -27 2302 62 45 0 chr6 113472820 113473112 -68942130 - AluY SINE Alu -6 305 1 402 269 36 42 chr6 113473140 113473307 -68941935 + L2 LINE L2 3147 3312 -1 197 241 149 11 chr6 113473451 113473538 -68941704 + L3b LINE CR1 1127 1225 -358 746 273 163 19 chr6 113474691 113475109 -68940133 - LTR33 LTR ERVL 0 521 44 210 267 67 50 chr6 113475520 113475580 -68939662 + L2 LINE L2 3210 3270 -2 241 326 65 62 chr6 113476554 113476861 -68938381 + L2 LINE L2 2451 2758 -556 226 264 0 0 chr6 113477660 113477713 -68937529 + (TA)n Simple_repeat Simple_repeat 1 53 0 201 94 0 0 chr6 113477733 113477765 -68937477 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 267 262 95 48 chr6 113477966 113478092 -68937150 - MIR SINE MIR -13 249 118 195 42 0 0 chr6 113478625 113478649 -68936593 + (GA)n Simple_repeat Simple_repeat 1 24 0 258 299 22 79 chr6 113479258 113479452 -68935790 + MIR SINE MIR 30 212 -28 261 151 55 14 chr6 113479614 113479687 -68935555 + A-rich Low_complexity Low_complexity 2 77 0 308 296 9 153 chr6 113481094 113481435 -68933807 + L2 LINE L2 2978 3269 -3 347 302 160 24 chr6 113483010 113483222 -68932020 - L2 LINE L2 -4 3268 3028 652 335 115 47 chr6 113483453 113484381 -68930861 - L2 LINE L2 -445 2869 1879 193 229 257 40 chr6 113484815 113484990 -68930252 + MIR SINE MIR 10 222 -40 218 200 29 57 chr6 113485061 113485131 -68930111 + MIR SINE MIR 181 248 -14 2447 200 51 15 chr6 113485767 113486025 -68929217 + L1M3 LINE L1 4639 4886 -1282 2001 140 0 0 chr6 113486025 113486310 -68928932 + AluSc SINE Alu 25 309 0 2447 200 51 15 chr6 113486310 113487081 -68928161 + L1M3 LINE L1 4886 5719 -449 320 371 0 0 chr6 113487229 113487345 -68927897 + MLT1J LTR MaLR 111 226 -285 276 279 121 14 chr6 113488774 113488914 -68926328 + MLT1J1 LTR MaLR 5 159 -287 2342 113 3 0 chr6 113489809 113490118 -68925124 - AluY SINE Alu -1 310 1 409 286 36 0 chr6 113491703 113491815 -68923427 + L2 LINE L2 3191 3306 -7 203 0 37 0 chr6 113492137 113492164 -68923078 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 458 294 8 0 chr6 113493788 113493914 -68921328 + MER94 DNA DNA 8 134 0 412 252 68 0 chr6 113494439 113494542 -68920700 - MIR SINE MIR -80 182 73 180 77 0 0 chr6 113495262 113495288 -68919954 + (TC)n Simple_repeat Simple_repeat 1 26 0 1029 179 117 148 chr6 113496727 113497244 -68917998 - LTR50 LTR ERVL -2 793 309 1569 164 104 4 chr6 113497244 113497512 -68917730 + AluJb SINE Alu 1 295 -17 1029 179 117 148 chr6 113497512 113497812 -68917430 - LTR50 LTR ERVL -486 309 1 222 205 0 0 chr6 113500402 113500441 -68914801 + GA-rich Low_complexity Low_complexity 4 42 0 610 274 52 44 chr6 113500594 113500842 -68914400 - MIR SINE MIR 0 262 13 199 313 42 42 chr6 113501319 113501415 -68913827 + L2 LINE L2 3158 3253 -19 216 0 0 0 chr6 113502239 113502263 -68912979 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 341 348 80 16 chr6 113502979 113503166 -68912076 + MIR SINE MIR 15 212 -50 2215 127 0 3 chr6 113503272 113503572 -68911670 - AluSx SINE Alu -13 299 1 2186 104 0 0 chr6 113505700 113505999 -68909243 + AluSg SINE Alu 1 299 0 5127 193 50 20 chr6 113505999 113508306 -68906936 - L1MB7 LINE L1 -20 6164 3791 522 186 10 0 chr6 113508310 113508412 -68906830 - MLT1B LTR MaLR -4 386 284 10830 162 35 24 chr6 113508413 113510449 -68904793 + ERVL LTR ERVL 3094 5151 -613 4813 228 42 57 chr6 113510471 113511820 -68903422 + MSTD-int LTR MaLR 381 1709 -26 1545 197 70 44 chr6 113511829 113512215 -68903027 + MSTD LTR MaLR 1 396 0 2655 227 75 10 chr6 113512235 113513319 -68901923 - L1ME LINE L1 -563 5603 4455 1779 135 63 36 chr6 113513343 113513706 -68901536 - THE1C LTR MaLR -2 373 1 1136 239 90 35 chr6 113513722 113514123 -68901119 - MLT1J2 LTR MaLR -27 423 1 227 192 64 0 chr6 113514155 113514233 -68901009 + L1MC/D LINE L1 5667 5749 -2059 258 256 0 49 chr6 113514359 113514441 -68900801 + MER94 DNA DNA 16 93 -41 323 323 99 45 chr6 113514486 113514522 -68900720 + L1ME LINE L1 5261 5294 -872 1702 191 3 17 chr6 113514522 113514816 -68900426 + AluJo SINE Alu 1 290 -22 323 323 99 45 chr6 113514816 113515024 -68900218 + L1ME LINE L1 5294 5517 -649 403 113 0 0 chr6 113515026 113515088 -68900154 + MER21A LTR ERV1 512 573 -358 314 261 17 9 chr6 113516059 113516174 -68899068 + L1ME3A LINE L1 4960 5075 -1071 282 252 112 65 chr6 113516248 113516462 -68898780 + L1ME3A LINE L1 5939 6162 -8 7757 140 32 10 chr6 113516522 113517178 -68898064 - Tigger1 DNA MER2_type 0 2418 1778 2225 124 0 3 chr6 113517178 113517476 -68897766 - AluSq SINE Alu -16 297 1 7757 140 32 10 chr6 113517476 113518176 -68897066 - Tigger1 DNA MER2_type -640 1778 1032 4112 147 14 29 chr6 113518173 113518908 -68896334 - Tigger1 DNA MER2_type -1694 724 1 * 241 288 18 9 chr6 113518939 113519050 -68896192 + L1M1 LINE L1 5714 5825 -480 1777 160 42 0 chr6 113519170 113519458 -68895784 + AluJo SINE Alu 1 300 -12 24 0 0 0 chr6 113521742 113521766 -68893476 + AT_rich Low_complexity Low_complexity 1 24 0 3120 72 9 5 chr6 113521778 113522210 -68893032 - MLT2A1 LTR ERVL -10 434 1 16300 148 34 12 chr6 113522220 113526352 -68888890 + L1PB1 LINE L1 147 4381 -2481 5469 159 20 7 chr6 113526349 113526564 -68888678 + L1PB1 LINE L1 4898 5109 -1758 * 700 11 33 0 chr6 113526564 113526656 -68888586 + (TAAAA)n Simple_repeat Simple_repeat 4 98 0 5469 159 20 7 chr6 113526656 113528025 -68887217 + L1PB1 LINE L1 5109 6508 -359 273 57 0 0 chr6 113528025 113528060 -68887182 + (CA)n Simple_repeat Simple_repeat 1 35 0 5469 159 20 7 chr6 113528060 113528420 -68886822 + L1PB1 LINE L1 6508 6862 -5 2746 16 0 3 chr6 113528537 113528849 -68886393 + AluYa5 SINE Alu 1 311 0 1145 257 116 135 chr6 113530108 113530407 -68884835 + L2 LINE L2 1706 2009 -1304 505 230 63 0 chr6 113530407 113530533 -68884709 - L1MD3 LINE L1 0 7995 7862 1145 257 116 135 chr6 113530533 113531718 -68883524 + L2 LINE L2 2009 3312 -1 474 242 106 35 chr6 113532903 113533130 -68882112 + HAL1b LINE L1 182 424 -924 309 269 106 0 chr6 113533208 113533312 -68881930 + HAL1b LINE L1 528 642 -706 236 222 0 0 chr6 113533712 113533757 -68881485 - MLT1J LTR MaLR -358 153 109 1555 186 18 54 chr6 113533759 113533912 -68881330 - MER99 DNA DNA -11 817 660 1664 174 14 0 chr6 113533912 113534216 -68881026 + AluJb SINE Alu 3 310 0 1555 186 18 54 chr6 113534216 113534395 -68880847 - MER99 DNA DNA -168 660 496 3661 235 86 30 chr6 113534398 113535502 -68879740 + L1MEc LINE L1 377 1418 -4797 2669 48 0 0 chr6 113535502 113535813 -68879429 + AluY SINE Alu 1 311 0 3661 235 86 30 chr6 113535813 113536571 -68878671 + L1MEc LINE L1 1418 2946 -3269 429 307 60 23 chr6 113536617 113536832 -68878410 - MARNA DNA Mariner -356 230 8 203 179 0 0 chr6 113536902 113536941 -68878301 + T-rich Low_complexity Low_complexity 1 39 0 5999 23 0 0 chr6 113536944 113537593 -68877649 - L1PA3 LINE L1 0 6155 5507 482 198 132 71 chr6 113537676 113537888 -68877354 - L2 LINE L2 -9 3304 3080 2473 100 43 27 chr6 113538894 113539189 -68876053 + THE1C LTR MaLR 1 305 -70 2257 95 0 7 chr6 113539189 113539483 -68875759 - AluSg SINE Alu -18 292 1 2473 100 43 27 chr6 113539483 113539556 -68875686 + THE1C LTR MaLR 305 375 0 11447 104 25 27 chr6 113539556 113541139 -68874103 + THE1C-int LTR MaLR 1 1580 0 2666 110 39 8 chr6 113541139 113541503 -68873739 + THE1C LTR MaLR 1 375 0 194 292 80 26 chr6 113542810 113542923 -68872319 - MIR SINE MIR -71 137 19 24 0 0 0 chr6 113543110 113543134 -68872108 + AT_rich Low_complexity Low_complexity 1 24 0 568 322 62 25 chr6 113543202 113543444 -68871798 + MIR SINE MIR 1 251 -11 434 37 0 0 chr6 113543475 113543529 -68871713 + MADE1 DNA Mariner 27 80 0 23 0 0 0 chr6 113544078 113544101 -68871141 + AT_rich Low_complexity Low_complexity 1 23 0 233 296 0 14 chr6 113544791 113544862 -68870380 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 21 0 0 0 chr6 113546704 113546725 -68868517 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 113548246 113548270 -68866972 + AT_rich Low_complexity Low_complexity 1 24 0 1076 261 177 23 chr6 113548624 113548939 -68866303 - L2 LINE L2 0 3313 3048 1162 180 23 14 chr6 113548939 113549156 -68866086 - MER20 DNA MER1_type 0 219 1 1076 261 177 23 chr6 113549156 113549661 -68865581 - L2 LINE L2 -265 3048 2349 193 202 167 41 chr6 113550153 113550243 -68864999 + L2 LINE L2 3173 3313 0 208 130 43 22 chr6 113550338 113550384 -68864858 + CT-rich Low_complexity Low_complexity 1 47 0 275 326 0 22 chr6 113550384 113550483 -68864759 + MIR SINE MIR 10 103 -105 294 362 57 0 chr6 113550703 113550808 -68864434 - L2 LINE L2 -45 3227 3117 396 71 0 0 chr6 113551131 113551187 -68864055 + (CA)n Simple_repeat Simple_repeat 2 57 0 541 157 101 82 chr6 113553093 113553252 -68861990 - MER112 DNA MER1_type -11 249 88 285 98 0 0 chr6 113553252 113553293 -68861949 + (TG)n Simple_repeat Simple_repeat 1 41 0 2379 154 28 6 chr6 113553641 113553997 -68861245 + THE1B LTR MaLR 1 364 0 386 263 10 10 chr6 113554083 113554182 -68861060 - MIR SINE MIR -52 210 112 1546 96 14 5 chr6 113554287 113554507 -68860735 + AluY SINE Alu 86 307 -4 2410 82 0 16 chr6 113554878 113555194 -68860048 + AluY SINE Alu 1 311 0 5146 89 43 29 chr6 113555293 113556145 -68859097 + SVA Other Other 1 864 -522 29 47 0 0 chr6 113556763 113556806 -68858436 + GC_rich Low_complexity Low_complexity 1 43 0 2168 121 0 0 chr6 113557523 113557805 -68857437 + AluSx SINE Alu 1 282 -30 297 0 0 0 chr6 113557808 113557841 -68857401 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7438 56 7 2 chr6 113559004 113560079 -68855163 + L1PA7 LINE L1 5073 6154 0 3048 140 55 10 chr6 113560079 113560602 -68854640 + L1MA8 LINE L1 5605 6151 -140 1066 209 45 98 chr6 113560899 113560947 -68854295 + MER58B DNA MER1_type 3 52 -2368 2637 52 0 0 chr6 113560947 113561257 -68853985 - AluY SINE Alu -1 310 1 1066 209 45 98 chr6 113561257 113561566 -68853676 + MER58B DNA MER1_type 52 341 0 508 279 0 27 chr6 113562483 113562666 -68852576 + GA-rich Low_complexity Low_complexity 1 178 0 964 200 0 11 chr6 113563138 113563328 -68851914 + MER5A DNA MER1_type 2 189 0 357 330 86 30 chr6 113563845 113564078 -68851164 - L2 LINE L2 -203 3069 2824 954 270 133 51 chr6 113564095 113564780 -68850462 - L2 LINE L2 -596 2718 1978 287 246 29 0 chr6 113565529 113565616 -68849626 + L1ME3A LINE L1 6077 6169 -1 404 242 117 0 chr6 113565810 113565930 -68849312 - MIR SINE MIR -34 228 95 549 281 11 0 chr6 113566483 113566662 -68848580 - L1 LINE L1 -1909 4237 4047 2412 96 0 0 chr6 113567218 113567530 -68847712 - AluSx SINE Alu 0 312 1 334 273 23 0 chr6 113567900 113567988 -68847254 + L1MC4 LINE L1 6614 6703 -1339 311 322 0 0 chr6 113567940 113568030 -68847212 - L1MC4 LINE L1 -1339 6703 6614 * 310 287 23 0 chr6 113568013 113568100 -68847142 + L1MC4 LINE L1 6615 6703 -1339 * 42400 40 1 2 chr6 113568213 113573274 -68841968 - L1P LINE L1 -1084 5062 7 366 288 23 0 chr6 113573274 113573379 -68841863 - MER58 DNA MER1_type -107 108 1 211 219 124 95 chr6 113574637 113574774 -68840468 - MIR SINE MIR -100 162 22 198 348 54 11 chr6 113576315 113576407 -68838835 - L2 LINE L2 -52 3220 3125 194 61 0 30 chr6 113576949 113576982 -68838260 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 2028 75 0 8 chr6 113577535 113577803 -68837439 - L1MA2 LINE L1 0 6304 6039 717 251 64 30 chr6 113578033 113578268 -68836974 - MIR SINE MIR 0 262 20 235 343 9 29 chr6 113578963 113579068 -68836174 - MIR3 SINE MIR -39 169 67 612 251 66 18 chr6 113579280 113579447 -68835795 - MIR SINE MIR -52 210 36 2203 116 7 3 chr6 113579563 113579866 -68835376 - AluSx SINE Alu -8 304 1 22 0 0 0 chr6 113580154 113580176 -68835066 + AT_rich Low_complexity Low_complexity 1 22 0 401 265 38 23 chr6 113580830 113580962 -68834280 - MIR SINE MIR -1 261 128 956 273 50 56 chr6 113581176 113581229 -68834013 - L2 LINE L2 -1522 1792 1740 2055 126 75 40 chr6 113581229 113581507 -68833735 + THE1B LTR MaLR 1 295 -69 2083 130 0 23 chr6 113581507 113581807 -68833435 - AluSx SINE Alu -19 293 1 2055 126 75 40 chr6 113581807 113581877 -68833365 + THE1B LTR MaLR 295 361 -3 956 273 50 56 chr6 113581877 113582201 -68833041 - L2 LINE L2 -1574 1740 1417 657 149 0 0 chr6 113582255 113582369 -68832873 + (CA)n Simple_repeat Simple_repeat 2 115 0 245 250 73 65 chr6 113582369 113582493 -68832749 + L1MC5 LINE L1 7715 7839 -122 280 190 69 0 chr6 113582496 113582554 -68832688 - MIR SINE MIR 0 262 201 1683 185 2 87 chr6 113583363 113583789 -68831453 - MLT1B LTR MaLR 0 390 1 276 143 26 130 chr6 113585408 113585485 -68829757 + Tigger2 DNA MER2_type 1 69 -2649 * 2680 125 49 14 chr6 113585475 113585906 -68829336 + Tigger2 DNA MER2_type 2273 2718 0 1997 194 0 32 chr6 113586332 113586709 -68828533 + MLT1A1 LTR MaLR 1 365 0 1023 289 103 10 chr6 113587120 113587518 -68827724 - L2 LINE L2 -465 2849 2415 2132 247 51 3 chr6 113588206 113588776 -68826466 - L1ME3A LINE L1 -5 6165 5569 324 266 13 0 chr6 113589241 113589320 -68825922 + L2 LINE L2 3221 3300 -13 1073 267 132 36 chr6 113590138 113590799 -68824443 + L2 LINE L2 2599 3313 0 2845 240 85 34 chr6 113591243 113591532 -68823710 + L1ME1 LINE L1 726 999 -5216 2190 105 3 23 chr6 113591532 113591838 -68823404 + AluSq SINE Alu 3 302 -11 2845 240 85 34 chr6 113591838 113593322 -68821920 + L1ME1 LINE L1 999 2590 -3625 3677 138 36 0 chr6 113593322 113593903 -68821339 - MER7C DNA MER2_type 0 602 1 2845 240 85 34 chr6 113593903 113594425 -68820817 + L1ME1 LINE L1 2590 3084 -3131 293 253 11 46 chr6 113595773 113595860 -68819382 - MIR SINE MIR -56 206 123 205 280 37 37 chr6 113595930 113596037 -68819205 - MIR SINE MIR -50 212 106 1970 114 26 0 chr6 113596472 113596745 -68818497 - AluSx SINE Alu -12 300 21 303 326 45 38 chr6 113596919 113597051 -68818191 + L2 LINE L2 3180 3312 -1 198 0 0 0 chr6 113597182 113597204 -68818038 + (A)n Simple_repeat Simple_repeat 1 22 0 478 272 9 9 chr6 113600475 113600589 -68814653 - L2 LINE L2 0 3313 3200 459 35 0 0 chr6 113601393 113601450 -68813792 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 300 267 0 0 chr6 113602010 113602085 -68813157 + Charlie7 DNA MER1_type 37 111 -2501 7746 17 3 0 chr6 113602208 113603306 -68811936 + L1PA3 LINE L1 5050 6150 -5 377 167 0 15 chr6 113603396 113603462 -68811780 + MER58 DNA MER1_type 2356 2420 0 888 277 72 27 chr6 113603479 113604155 -68811087 + L1ME1 LINE L1 3326 4099 -2116 2993 221 64 36 chr6 113604161 113605504 -68809738 + L1ME1 LINE L1 4854 6235 0 273 146 0 0 chr6 113605518 113605566 -68809676 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1694 151 21 21 chr6 113605572 113605856 -68809386 - AluJb SINE Alu -28 284 1 1797 119 0 0 chr6 113605881 113606153 -68809089 + AluSx SINE Alu 47 318 0 296 257 48 28 chr6 113606338 113606489 -68808753 - MIR3 SINE MIR -65 143 4 336 349 57 6 chr6 113606599 113606774 -68808468 + MIR SINE MIR 21 204 -58 2829 64 3 18 chr6 113606866 113607256 -68807986 + L1PA7 LINE L1 5771 6154 0 325 305 148 14 chr6 113607256 113607466 -68807776 + L1M4 LINE L1 3955 4192 -1954 357 267 26 0 chr6 113607507 113607623 -68807619 + MER103 DNA DNA 46 164 -2 609 329 104 0 chr6 113607751 113607973 -68807269 + MIR SINE MIR 18 262 0 248 368 9 0 chr6 113608287 113608393 -68806849 + L3 LINE CR1 1117 1223 -354 446 308 0 15 chr6 113609112 113609245 -68805997 - MIR SINE MIR -130 132 2 234 213 43 0 chr6 113610065 113610112 -68805130 + polypurine Low_complexity Low_complexity 1 49 0 707 276 111 9 chr6 113610209 113610434 -68804808 + MIR SINE MIR 15 262 0 318 323 92 23 chr6 113610703 113610833 -68804409 - L2 LINE L2 -8 3264 3126 1628 148 10 48 chr6 113611788 113612078 -68803164 + AluJo SINE Alu 9 287 -25 26 30 0 0 chr6 113612284 113612317 -68802925 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr6 113613736 113613762 -68801480 + AT_rich Low_complexity Low_complexity 1 26 0 3493 148 60 12 chr6 113615631 113616287 -68798955 - L1MC1 LINE L1 0 6333 5647 223 299 130 0 chr6 113616379 113616456 -68798786 - MIR3 SINE MIR -7 201 115 378 0 0 0 chr6 113616521 113616563 -68798679 + (TG)n Simple_repeat Simple_repeat 2 43 0 383 192 0 14 chr6 113617722 113617795 -68797447 - L1MC1 LINE L1 -127 6206 6135 6729 72 7 8 chr6 113617826 113618943 -68796299 + L1PA10 LINE L1 5053 6168 0 1263 103 0 16 chr6 113620158 113620343 -68794899 - AluY SINE Alu -129 182 1 2217 124 0 0 chr6 113621228 113621526 -68793716 + AluSg SINE Alu 1 298 -12 6227 44 1 0 chr6 113622817 113623566 -68791676 - L1PA5 LINE L1 -4 6150 5401 245 278 0 0 chr6 113624182 113624236 -68791006 + GA-rich Low_complexity Low_complexity 1 54 0 286 214 29 14 chr6 113624335 113624405 -68790837 + CT-rich Low_complexity Low_complexity 3 73 0 4400 66 2 0 chr6 113625187 113625748 -68789494 + L1PA7 LINE L1 5591 6152 -2 432 0 0 0 chr6 113625763 113625811 -68789431 + (CA)n Simple_repeat Simple_repeat 1 48 0 25 31 0 0 chr6 113626060 113626092 -68789150 + AT_rich Low_complexity Low_complexity 1 32 0 565 285 99 67 chr6 113626454 113627285 -68787957 + HAL1 LINE L1 818 1674 -833 258 250 71 18 chr6 113627601 113627713 -68787529 + HAL1b LINE L1 754 871 -477 2610 229 72 42 chr6 113628550 113629403 -68785839 - L1ME3A LINE L1 -4 6166 5282 288 0 0 0 chr6 113629403 113629435 -68785807 + (TG)n Simple_repeat Simple_repeat 2 33 0 2610 229 72 42 chr6 113629435 113629514 -68785728 - L1ME3A LINE L1 -888 5282 5207 719 321 85 17 chr6 113629866 113630336 -68784906 + L2 LINE L2 2452 2953 -361 476 284 108 34 chr6 113630817 113631085 -68784157 + L2 LINE L2 3026 3313 0 489 330 117 33 chr6 113631953 113632482 -68782760 - L2 LINE L2 -63 3209 2633 269 282 126 29 chr6 113632938 113633041 -68782201 - L2 LINE L2 0 3272 3160 21 0 0 0 chr6 113633137 113633158 -68782084 + AT_rich Low_complexity Low_complexity 1 21 0 388 245 20 0 chr6 113633217 113633319 -68781923 + MER5A DNA MER1_type 6 109 -80 23 54 0 0 chr6 113633707 113633744 -68781498 + AT_rich Low_complexity Low_complexity 1 37 0 210 71 0 0 chr6 113635674 113635702 -68779540 + (A)n Simple_repeat Simple_repeat 1 28 0 341 272 22 11 chr6 113637565 113637657 -68777585 - L3 LINE CR1 -60 1517 1425 22 0 0 0 chr6 113637740 113637762 -68777480 + AT_rich Low_complexity Low_complexity 1 22 0 2317 113 0 3 chr6 113637772 113638072 -68777170 - AluSx SINE Alu -13 299 1 315 358 28 0 chr6 113638222 113638331 -68776911 + MER5B DNA MER1_type 8 119 -59 244 333 26 26 chr6 113638234 113638348 -68776894 - MER5A DNA MER1_type -21 168 55 * 294 289 0 0 chr6 113638843 113638919 -68776323 - L2 LINE L2 0 3313 3238 236 333 8 0 chr6 113639130 113639227 -68776015 + (TA)n Simple_repeat Simple_repeat 2 102 -17 514 77 13 26 chr6 113639227 113639305 -68775937 - MADE1 DNA Mariner -3 77 1 236 333 8 0 chr6 113639305 113639324 -68775918 + (TA)n Simple_repeat Simple_repeat 102 119 0 2061 156 11 11 chr6 113640410 113640770 -68774472 - MLT1A1 LTR MaLR -5 360 1 275 368 45 30 chr6 113641447 113641580 -68773662 - L2 LINE L2 -1 3271 3137 338 331 146 36 chr6 113641608 113642134 -68773108 - L2 LINE L2 -597 2717 2134 4740 131 47 2 chr6 113642213 113642565 -68772677 + L1MA4 LINE L1 5428 5763 -537 297 0 0 0 chr6 113642565 113642598 -68772644 + (CA)n Simple_repeat Simple_repeat 2 34 0 4740 131 47 2 chr6 113642598 113643077 -68772165 + L1MA4 LINE L1 5763 6296 -4 2270 106 10 0 chr6 113645108 113645411 -68769831 + AluSx SINE Alu 1 306 -6 24 53 0 0 chr6 113646480 113646518 -68768724 + AT_rich Low_complexity Low_complexity 1 38 0 267 31 0 0 chr6 113646983 113647015 -68768227 + (TC)n Simple_repeat Simple_repeat 1 32 0 187 302 70 12 chr6 113647903 113647989 -68767253 + L3b LINE CR1 1265 1355 -228 821 273 104 11 chr6 113648591 113648946 -68766296 + MLT1L LTR MaLR 218 605 -10 211 320 50 20 chr6 113651696 113651796 -68763446 - L2 LINE L2 -497 2817 2715 1337 141 67 11 chr6 113652662 113652946 -68762296 + L1MA8 LINE L1 5990 6289 -2 293 265 125 10 chr6 113653301 113653501 -68761741 - L1ME LINE L1 -360 5761 5539 1965 163 49 3 chr6 113653777 113654126 -68761116 + MLT2D LTR ERVL 1 365 -49 264 83 0 0 chr6 113654184 113654220 -68761022 + MLT2D LTR ERVL 476 511 -4 324 286 116 0 chr6 113654229 113654341 -68760901 + MIR SINE MIR 110 234 -28 249 33 0 0 chr6 113654443 113654473 -68760769 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 405 39 0 0 chr6 113654472 113654523 -68760719 + (CA)n Simple_repeat Simple_repeat 1 51 0 27 29 0 0 chr6 113655936 113655970 -68759272 + AT_rich Low_complexity Low_complexity 1 34 0 1422 225 99 12 chr6 113656287 113656691 -68758551 - MLT1C LTR MaLR -12 455 17 1074 233 137 6 chr6 113656686 113657008 -68758234 - Cheshire DNA MER1_type -2056 364 1 * 3905 103 23 21 chr6 113657329 113657904 -68757338 - L1MA3 LINE L1 0 6305 5726 1988 84 0 97 chr6 113657904 113658243 -68756999 + AluSc SINE Alu 1 309 0 3905 103 23 21 chr6 113658243 113658280 -68756962 - L1MA3 LINE L1 -579 5726 5691 1033 95 0 32 chr6 113659264 113659422 -68755820 - AluSx SINE Alu -159 153 1 224 297 0 0 chr6 113659587 113659651 -68755591 - MIR SINE MIR -13 249 186 3884 117 0 6 chr6 113659722 113660252 -68754990 + MER1A DNA MER1_type 1 527 0 249 239 0 0 chr6 113660602 113660648 -68754594 - L2 LINE L2 -17 3296 3251 453 269 217 9 chr6 113661127 113661339 -68753903 + MIR SINE MIR 3 258 -4 467 200 224 0 chr6 113661669 113661794 -68753448 - MIR SINE MIR -6 256 104 1342 168 0 0 chr6 113661795 113662004 -68753238 + AluJb SINE Alu 88 296 -16 240 277 128 32 chr6 113663044 113663213 -68752029 - MIR3 SINE MIR -62 146 9 1538 80 5 0 chr6 113663269 113663470 -68751772 - L1PA8 LINE L1 0 6172 5971 371 262 0 19 chr6 113663762 113663865 -68751377 + MLT1K LTR MaLR 445 545 -43 310 273 139 56 chr6 113665518 113665928 -68749314 + L1ME LINE L1 5318 5761 -360 27 29 0 0 chr6 113666028 113666062 -68749180 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr6 113666106 113666134 -68749108 + AT_rich Low_complexity Low_complexity 1 28 0 220 143 32 32 chr6 113666137 113666200 -68749042 + (TA)n Simple_repeat Simple_repeat 2 64 0 25 31 0 0 chr6 113666255 113666287 -68748955 + AT_rich Low_complexity Low_complexity 1 32 0 559 158 0 0 chr6 113666366 113666448 -68748794 + AluJo SINE Alu 3 84 -228 262 285 69 23 chr6 113667174 113667304 -68747938 + Charlie8 DNA MER1_type 10 145 -2272 1859 91 0 0 chr6 113667313 113667612 -68747630 - L1P3 LINE L1 -4692 1769 1480 2422 52 0 7 chr6 113667612 113667918 -68747324 + L1PA7 LINE L1 5848 6151 -3 189 0 0 0 chr6 113668660 113668681 -68746561 + (A)n Simple_repeat Simple_repeat 1 21 0 1005 279 67 48 chr6 113668853 113669315 -68745927 - MLT1H1 LTR MaLR -77 478 8 542 28 14 0 chr6 113671560 113671632 -68743610 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 2107 122 0 0 chr6 113671633 113671920 -68743322 - AluSx SINE Alu -25 287 1 227 310 222 30 chr6 113672319 113672522 -68742720 + MIR SINE MIR 12 253 -9 2602 274 49 50 chr6 113672750 113674112 -68741130 + L2 LINE L2 1713 3081 -232 2185 176 41 0 chr6 113674112 113674527 -68740715 + MSTB1 LTR MaLR 1 432 0 2602 274 49 50 chr6 113674527 113674760 -68740482 + L2 LINE L2 3081 3313 0 1139 158 35 0 chr6 113676683 113676885 -68738357 - MER3 DNA MER1_type 0 209 1 29 0 0 0 chr6 113677297 113677326 -68737916 + AT_rich Low_complexity Low_complexity 1 29 0 250 255 122 10 chr6 113677661 113677759 -68737483 + MIR SINE MIR 106 214 -48 335 239 34 17 chr6 113678025 113678142 -68737100 - MER119 DNA MER1_type -2 581 463 418 278 70 0 chr6 113678142 113678257 -68736985 - MER119 DNA MER1_type -456 127 5 1105 162 0 96 chr6 113678359 113678588 -68736654 + AluJo SINE Alu 86 292 -20 252 86 0 0 chr6 113678885 113678920 -68736322 + (CA)n Simple_repeat Simple_repeat 2 36 0 1447 184 42 36 chr6 113678970 113679307 -68735935 - MER44D DNA MER2_type 0 609 1 421 244 100 25 chr6 113679357 113679517 -68735725 - MIR SINE MIR 0 262 91 2259 200 111 16 chr6 113679532 113680598 -68734644 + L1ME1 LINE L1 4663 5834 -332 21 82 0 0 chr6 113681084 113681133 -68734109 + AT_rich Low_complexity Low_complexity 1 49 0 288 156 16 16 chr6 113681302 113681366 -68733876 + MLT1F LTR MaLR 20 83 -459 204 40 0 0 chr6 113681452 113681477 -68733765 + (T)n Simple_repeat Simple_repeat 1 25 0 * 285 250 0 14 chr6 113681473 113681545 -68733697 + MLT1F LTR MaLR 246 316 -279 1540 192 26 96 chr6 113681626 113681968 -68733274 - Charlie1b DNA MER1_type -2238 523 225 2529 53 20 0 chr6 113681968 113682268 -68732974 + AluY SINE Alu 1 306 -5 1540 192 26 96 chr6 113682268 113682426 -68732816 - Charlie1b DNA MER1_type -2536 225 58 2100 97 7 3 chr6 113683212 113683510 -68731732 + AluY SINE Alu 1 299 -12 4223 17 2 0 chr6 113684292 113684751 -68730491 + L1PA4 LINE L1 5696 6155 0 338 268 42 42 chr6 113684758 113684948 -68730294 + Charlie7 DNA MER1_type 2394 2583 -29 2396 81 7 0 chr6 113685812 113686109 -68729133 - AluSx SINE Alu -13 299 1 2186 106 0 7 chr6 113687473 113687765 -68727477 + AluSx SINE Alu 1 290 -22 554 255 54 39 chr6 113687921 113688125 -68727117 - MER113 DNA MER1_type? -101 420 214 2272 119 32 42 chr6 113688125 113688502 -68726740 - Tigger2 DNA MER2_type 0 2718 2346 1772 171 7 0 chr6 113688677 113688976 -68726266 - AluJb SINE Alu -11 301 1 359 267 23 30 chr6 113689255 113689386 -68725856 + MIR SINE MIR 103 232 -30 1929 136 0 0 chr6 113689471 113689743 -68725499 + AluSx SINE Alu 1 272 -40 709 153 32 0 chr6 113689753 113689910 -68725332 + GA-rich Low_complexity Low_complexity 1 162 0 358 138 35 0 chr6 113690982 113691040 -68724202 - L1ME4a LINE L1 -87 6034 5975 642 303 59 19 chr6 113691061 113691368 -68723874 - L1ME4a LINE L1 -200 5921 5603 278 291 40 61 chr6 113692236 113692384 -68722858 - L2 LINE L2 -5 3308 3164 240 35 0 0 chr6 113694380 113694409 -68720833 + (T)n Simple_repeat Simple_repeat 1 29 0 479 306 92 0 chr6 113695114 113695310 -68719932 - MIR SINE MIR -2 260 47 213 300 90 10 chr6 113697696 113697796 -68717446 - MER5B DNA MER1_type -69 109 2 359 261 80 45 chr6 113698020 113698196 -68717046 + MIR3 SINE MIR 26 207 -1 1296 170 72 64 chr6 113699173 113699549 -68715693 + Charlie1b DNA MER1_type 3 381 -142 212 331 115 19 chr6 113699683 113699840 -68715402 - L2 LINE L2 -182 3090 2919 279 79 0 0 chr6 113701340 113701378 -68713864 + (CA)n Simple_repeat Simple_repeat 2 39 0 227 312 65 51 chr6 113701393 113701531 -68713711 + MIR3 SINE MIR 4 143 -65 711 290 48 8 chr6 113702369 113702617 -68712625 - MER102a DNA MER1_type 0 330 73 269 296 14 0 chr6 113703447 113703518 -68711724 - MIR3 SINE MIR -27 181 110 2196 112 26 0 chr6 113703893 113704196 -68711046 + AluSp SINE Alu 1 311 -2 180 0 0 0 chr6 113704813 113704833 -68710409 + (T)n Simple_repeat Simple_repeat 1 20 0 263 248 206 33 chr6 113705366 113705521 -68709721 - MIR SINE MIR -50 212 36 191 279 101 0 chr6 113705674 113705753 -68709489 + L2 LINE L2 3225 3311 -2 362 223 41 66 chr6 113706752 113706873 -68708369 + MIR3 SINE MIR 85 202 -6 192 97 0 0 chr6 113707182 113707213 -68708029 + (GA)n Simple_repeat Simple_repeat 2 32 0 328 205 36 24 chr6 113710586 113710669 -68704573 - L2 LINE L2 -3 3310 3227 396 290 56 37 chr6 113710792 113710979 -68704263 - MIR SINE MIR -70 192 6 311 258 21 11 chr6 113712451 113712544 -68702698 + LTR67 LTR ERVL 458 551 -6 250 332 190 34 chr6 113712560 113712976 -68702266 + L2 LINE L2 1442 1922 -1392 211 297 55 0 chr6 113713149 113713240 -68702002 + L2 LINE L2 1904 1999 -1315 266 320 56 0 chr6 113713352 113713477 -68701765 + L2 LINE L2 2671 2802 -512 222 37 0 0 chr6 113713603 113713630 -68701612 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 409 349 97 54 chr6 113715524 113716492 -68698750 - L2 LINE L2 -581 2733 1724 294 164 0 0 chr6 113716648 113716703 -68698539 + (CA)n Simple_repeat Simple_repeat 2 56 0 2538 220 78 19 chr6 113717530 113718180 -68697062 - L1ME3A LINE L1 -5 6165 5477 323 191 0 12 chr6 113718506 113718590 -68696652 + GA-rich Low_complexity Low_complexity 4 86 0 378 91 0 0 chr6 113719525 113719580 -68695662 + (CA)n Simple_repeat Simple_repeat 1 55 0 1911 153 7 7 chr6 113721704 113722032 -68693210 - AluSx SINE Alu 0 312 1 239 279 59 0 chr6 113722148 113722216 -68693026 - L2 LINE L2 0 3272 3201 2798 87 32 0 chr6 113722985 113723355 -68691887 + L1PA10 LINE L1 5783 6164 -4 221 325 142 8 chr6 113727502 113727622 -68687620 + MIR3 SINE MIR 45 180 -28 318 263 51 0 chr6 113728029 113728166 -68687076 + Charlie7 DNA MER1_type 2426 2569 -43 1836 128 33 23 chr6 113728188 113728493 -68686749 + MER1B DNA MER1_type 32 339 0 1110 216 0 0 chr6 113728505 113728704 -68686538 + MER58A DNA MER1_type 26 224 0 209 261 43 29 chr6 113728704 113728773 -68686469 - MIR3 SINE MIR -48 160 91 261 0 0 0 chr6 113729234 113729263 -68685979 + (TA)n Simple_repeat Simple_repeat 2 30 0 1220 259 133 5 chr6 113730135 113730571 -68684671 - L1ME3A LINE L1 0 6170 5679 950 114 0 0 chr6 113730824 113730956 -68684286 + L1MA2 LINE L1 6173 6304 0 23 68 0 0 chr6 113730956 113731000 -68684242 + AT_rich Low_complexity Low_complexity 1 44 0 41 48 0 0 chr6 113731116 113731178 -68684064 + AT_rich Low_complexity Low_complexity 1 62 0 7827 76 0 4 chr6 113731278 113732304 -68682938 + L1P LINE L1 4014 5035 -1111 909 194 10 15 chr6 113932316 113932517 -68482725 + AluSq SINE Alu 102 301 -12 893 224 0 5 chr6 113932519 113932724 -68482518 + L1 LINE L1 4790 4993 -1153 582 126 8 7 chr6 113932724 113932962 -68482280 + AluSx SINE Alu 1 303 -7 2630 141 63 5 chr6 113932964 113933580 -68481662 + L1P5 LINE L1 5038 5685 -466 355 83 0 0 chr6 113933598 113933646 -68481596 + L1P5 LINE L1 5658 5705 -446 481 253 0 0 chr6 113933749 113933836 -68481406 + Tigger2 DNA MER2_type 2632 2718 0 734 208 50 0 chr6 113934258 113934415 -68480827 + Tigger6a DNA MER2_type 2 166 -917 2152 130 3 48 chr6 113934415 113934770 -68480472 + MER1B DNA MER1_type 1 339 0 1199 180 65 50 chr6 113934770 113935103 -68480139 + Tigger6a DNA MER2_type 156 493 -590 281 343 0 46 chr6 113935488 113935596 -68479646 - MIR SINE MIR -114 148 46 836 207 11 37 chr6 113935656 113935844 -68479398 - LTR39 LTR ERV1 0 783 601 1276 143 40 103 chr6 113935951 113936252 -68478990 - LTR39 LTR ERV1 -501 282 1 929 143 30 148 chr6 113936263 113936457 -68478785 + MER84 LTR ERVI 1 78 -429 2401 75 0 0 chr6 113936457 113936750 -68478492 + AluSx SINE Alu 6 298 -14 929 143 30 148 chr6 113936750 113936857 -68478385 + MER84 LTR ERVI 78 196 -311 2414 102 0 3 chr6 113936986 113937309 -68477933 + L1PA6 LINE L1 5833 6154 0 4121 145 30 6 chr6 113937360 113938016 -68477226 + Tigger2 DNA MER2_type 2047 2718 0 191 171 0 0 chr6 113938660 113938695 -68476547 + MIR SINE MIR 120 154 -108 1016 182 10 10 chr6 113939072 113939307 -68475935 + MER61D LTR ERV1 1 223 -211 220 271 0 14 chr6 113939321 113939391 -68475851 + CT-rich Low_complexity Low_complexity 2 70 0 306 0 0 0 chr6 113939394 113939428 -68475814 + (TA)n Simple_repeat Simple_repeat 2 35 0 2361 127 19 3 chr6 113939530 113939893 -68475349 - LTR24C LTR ERV1 -266 369 1 185 398 47 8 chr6 113939900 113940028 -68475214 - L2 LINE L2 -704 2610 2478 465 281 17 28 chr6 113940062 113940240 -68475002 - L2 LINE L2 -933 2381 2206 371 325 154 23 chr6 113940217 113940522 -68474720 - L2 LINE L2 -6 3307 2963 * 741 248 153 7 chr6 113940581 113941114 -68474128 + L1M4 LINE L1 2203 2851 -3295 2588 62 0 3 chr6 113941144 113941450 -68473792 + AluY SINE Alu 1 305 -6 226 150 0 0 chr6 113941507 113941547 -68473695 - U2 snRNA snRNA -144 44 5 1791 176 97 32 chr6 113943051 113943421 -68471821 - MSTD LTR MaLR -2 394 1 2029 105 0 0 chr6 113943822 113944088 -68471154 + AluY SINE Alu 1 266 -45 673 206 63 72 chr6 113944151 113944374 -68470868 - L1ME2 LINE L1 -36 6128 5908 211 267 120 0 chr6 113944578 113944653 -68470589 + MIR SINE MIR 122 205 -57 351 331 47 18 chr6 113945273 113945442 -68469800 + MIR SINE MIR 62 235 -27 265 267 12 58 chr6 113945738 113945824 -68469418 + L2 LINE L2 3142 3223 -49 221 296 65 37 chr6 113945851 113945959 -68469283 - MIR SINE MIR -13 249 139 453 284 40 7 chr6 113945962 113946110 -68469132 + MER5A DNA MER1_type 9 161 -28 2899 101 13 0 chr6 113946888 113947275 -68467967 - MLT2A2 LTR ERVL -61 392 1 232 268 36 0 chr6 113947452 113947508 -68467734 + MER5A DNA MER1_type 105 162 -27 186 315 34 11 chr6 113947456 113947545 -68467697 - MER5A DNA MER1_type -98 91 1 * 5109 55 13 0 chr6 113947670 113948269 -68466973 - L1PA4 LINE L1 -1 6154 5548 465 218 68 20 chr6 113949131 113949278 -68465964 + MIR3 SINE MIR 33 186 -22 244 307 98 60 chr6 113949559 113949868 -68465374 + L2 LINE L2 2717 3038 -234 229 312 82 86 chr6 113950583 113950875 -68464367 + L2 LINE L2 2976 3266 -6 1661 139 65 47 chr6 113952237 113952346 -68462896 + MSTB1 LTR MaLR 88 194 -238 2078 118 7 0 chr6 113952346 113952633 -68462609 + AluSc SINE Alu 3 291 -18 1661 139 65 47 chr6 113952633 113952862 -68462380 + MSTB1 LTR MaLR 194 432 0 1786 184 75 57 chr6 113952862 113952957 -68462285 - MLT1D LTR MaLR -73 432 340 1466 233 111 11 chr6 113952957 113953317 -68461925 + MSTD LTR MaLR 1 396 0 1786 184 75 57 chr6 113953317 113953645 -68461597 - MLT1D LTR MaLR -165 340 1 215 79 26 0 chr6 113954468 113954506 -68460736 + (CA)n Simple_repeat Simple_repeat 1 39 0 3432 218 82 64 chr6 113955022 113955839 -68459403 - L1M4 LINE L1 -918 5228 4343 267 75 0 0 chr6 113955839 113955879 -68459363 + MADE1 DNA Mariner 4 43 -37 3432 218 82 64 chr6 113955879 113956233 -68459009 - L1M4 LINE L1 -1803 4343 3997 1092 182 30 47 chr6 113956478 113956714 -68458528 - LTR52 LTR ERVL -185 236 5 2460 241 56 8 chr6 113956729 113957446 -68457796 - L1M4 LINE L1 -2750 3396 2646 337 359 38 11 chr6 113957449 113957633 -68457609 - L2 LINE L2 -240 3073 2885 509 302 32 26 chr6 113957945 113958134 -68457108 - MIR SINE MIR -71 191 2 333 204 9 62 chr6 113958652 113958765 -68456477 - Charlie7 DNA MER1_type -31 2581 2475 308 268 41 31 chr6 113959279 113959376 -68455866 - L2 LINE L2 0 3272 3175 621 293 150 33 chr6 113959627 113959986 -68455256 - L2 LINE L2 -482 2832 2432 282 143 0 0 chr6 113960522 113960571 -68454671 + (A)n Simple_repeat Simple_repeat 1 49 0 326 329 65 18 chr6 113960571 113960741 -68454501 - MIR3 SINE MIR -15 193 16 941 81 147 0 chr6 113960768 113960904 -68454338 - L1PB2 LINE L1 -1 6150 5995 657 142 92 42 chr6 113960933 113961053 -68454189 - FLAM_C SINE Alu -16 127 2 842 152 191 17 chr6 113961439 113961617 -68453625 - MER3 DNA MER1_type 0 209 1 2219 113 0 3 chr6 113961791 113962092 -68453150 + AluSq SINE Alu 1 300 -13 591 236 13 64 chr6 113962160 113962317 -68452925 - L1ME LINE L1 -533 5637 5489 21010 70 5 2 chr6 113963006 113966180 -68449062 - L1P1 LINE L1 -397 5758 2574 10213 23 4 0 chr6 113966310 113967487 -68447755 - L1P LINE L1 -1111 5035 3854 3413 38 2 5 chr6 113967487 113967869 -68447373 + L1PA4 LINE L1 5758 6151 -4 29 0 0 0 chr6 113968191 113968220 -68447022 + AT_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr6 113968240 113968281 -68446961 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr6 113968760 113968784 -68446458 + AT_rich Low_complexity Low_complexity 1 24 0 2627 33 3 0 chr6 113968793 113969092 -68446150 + AluY SINE Alu 1 300 -11 866 170 0 7 chr6 113969483 113969618 -68445624 - AluJb SINE Alu -20 292 159 721 160 17 0 chr6 113969721 113969840 -68445402 + MER5A DNA MER1_type 60 180 -9 887 112 0 0 chr6 113969972 113970088 -68445154 + AluJb SINE Alu 3 118 -194 266 132 0 0 chr6 113971162 113971200 -68444042 - L2 LINE L2 -17 3255 3218 1551 188 31 0 chr6 113972041 113972333 -68442909 + AluJo SINE Alu 1 301 -11 1061 171 11 0 chr6 113972367 113972542 -68442700 + MER5A DNA MER1_type 4 180 -9 2057 113 38 3 chr6 113972659 113972951 -68442291 + AluJb SINE Alu 1 302 -10 291 85 0 0 chr6 113973053 113973100 -68442142 + (CA)n Simple_repeat Simple_repeat 2 48 0 1464 179 34 56 chr6 113973101 113973458 -68441784 - MLT1B LTR MaLR -38 352 4 1719 168 34 0 chr6 113974132 113974424 -68440818 - AluJo SINE Alu -10 302 1 24 32 0 0 chr6 113974720 113974751 -68440491 + AT_rich Low_complexity Low_complexity 1 31 0 615 260 41 15 chr6 113975511 113975707 -68439535 + L1MC5 LINE L1 7740 7940 -21 1907 178 0 0 chr6 113975825 113976128 -68439114 - AluJb SINE Alu -9 303 1 2280 116 3 0 chr6 113976799 113977109 -68438133 + AluSq SINE Alu 1 311 -2 529 231 6 115 chr6 113977893 113978075 -68437167 + MER5B DNA MER1_type 14 175 -3 378 272 29 0 chr6 113978075 113978177 -68437065 - MIR SINE MIR -52 210 106 248 299 56 28 chr6 113978667 113978774 -68436468 + MER5B DNA MER1_type 31 140 -38 189 0 0 0 chr6 113980072 113980093 -68435149 + (T)n Simple_repeat Simple_repeat 1 21 0 1913 86 16 0 chr6 113981028 113981273 -68433969 + AluSg SINE Alu 49 297 -13 232 323 125 68 chr6 113981391 113981883 -68433359 - L2 LINE L2 -50 3222 2719 2089 168 187 2 chr6 113981908 113982304 -68432938 + MER44D DNA MER2_type 1 472 -233 3756 169 52 16 chr6 113982304 113983000 -68432242 - MER21B LTR ERV1 0 863 143 1319 139 63 8 chr6 113983098 113983335 -68431907 + Tigger7 DNA MER2_type 2236 2485 -6 1090 91 7 0 chr6 113983444 113983586 -68431656 - LTR24C LTR ERV1 0 635 493 5280 175 194 23 chr6 113983586 113984751 -68430491 + MER52A LTR ERV1 1 1364 -391 4765 35 0 0 chr6 113984851 113985419 -68429823 - L1P LINE L1 -850 5296 4729 1472 160 137 76 chr6 113986237 113986713 -68428529 - MER69 DNA AcHobo -9 2517 2013 1347 214 256 2 chr6 113986708 113987166 -68428076 - MER69 DNA AcHobo -652 574 1 * 1867 97 69 31 chr6 113987407 113987696 -68427546 + AluSg SINE Alu 4 303 -7 234 0 0 0 chr6 113988010 113988036 -68427206 + (T)n Simple_repeat Simple_repeat 1 26 0 873 208 28 112 chr6 113988270 113988592 -68426650 - MER51C LTR ERV1 0 640 346 1122 199 49 45 chr6 113989766 113990033 -68425209 - MER44D DNA MER2_type -437 268 1 401 298 101 6 chr6 113990033 113990201 -68425041 + MIR SINE MIR 75 258 -4 1741 156 3 65 chr6 113990489 113990810 -68424432 - AluJb SINE Alu -11 301 1 1960 152 3 0 chr6 113992702 113992992 -68422250 + AluJb SINE Alu 1 291 -21 183 42 0 0 chr6 113993041 113993065 -68422177 + (TG)n Simple_repeat Simple_repeat 2 25 0 456 298 45 20 chr6 113994295 113994493 -68420749 + L1ME3A LINE L1 5737 5939 -231 2208 113 7 0 chr6 113994512 113994813 -68420429 - AluSx SINE Alu -9 303 1 207 69 0 0 chr6 113994836 113994865 -68420377 + (CA)n Simple_repeat Simple_repeat 2 30 0 32 19 0 37 chr6 113995899 113995919 -68419323 + AT_rich Low_complexity Low_complexity 1 20 -32 2094 106 7 3 chr6 113995919 113996201 -68419041 - AluSc SINE Alu -26 283 1 32 19 0 37 chr6 113996201 113996234 -68419008 + AT_rich Low_complexity Low_complexity 20 52 0 971 192 157 42 chr6 113996314 113996601 -68418641 - LTR40c LTR ERVL -145 320 1 257 298 24 12 chr6 113997223 113997307 -68417935 - L2 LINE L2 -2 3270 3186 614 291 152 16 chr6 113998155 113998848 -68416394 + L1M4 LINE L1 4583 5393 -753 242 221 65 26 chr6 113998913 113998990 -68416252 + L1ME3A LINE L1 901 980 -5446 * 407 80 0 0 chr6 113998960 113999010 -68416232 + L1PA8A LINE L1 6305 6354 -57 1477 99 0 0 chr6 113999208 113999400 -68415842 - AluSg/x SINE Alu -15 297 106 653 232 22 71 chr6 113999516 113999740 -68415502 + MIR SINE MIR 18 230 -32 2368 89 0 3 chr6 114000441 114000745 -68414497 - AluSp SINE Alu -10 303 1 732 285 103 29 chr6 114001266 114001711 -68413531 + L1ME3A LINE L1 1077 1554 -4862 388 227 57 0 chr6 114001729 114001817 -68413425 + L1ME3A LINE L1 3588 3680 -2746 4676 226 82 11 chr6 114001822 114003160 -68412082 + L1ME3A LINE L1 3728 5160 -1266 1454 254 113 5 chr6 114003161 114003578 -68411664 + LTR16B LTR ERVL 1 462 -2 414 344 68 0 chr6 114003585 114003748 -68411494 + HERV16 LTR ERVL 3 176 -4820 322 270 130 20 chr6 114004061 114004161 -68411081 + MERVL LTR ERVL 4105 4215 -1270 2439 226 104 65 chr6 114004459 114005592 -68409650 + L1ME3A LINE L1 5135 6448 -2 254 327 88 35 chr6 114006476 114006702 -68408540 + L2 LINE L2 1177 1414 -1900 332 336 219 18 chr6 114006834 114007576 -68407666 + L2 LINE L2 2343 3271 -1 29 28 0 0 chr6 114007579 114007615 -68407627 + AT_rich Low_complexity Low_complexity 1 36 0 494 104 8 208 chr6 114009467 114009592 -68405650 + AluY SINE Alu 200 299 -12 180 361 0 14 chr6 114010072 114010144 -68405098 - L2 LINE L2 -1364 1950 1880 416 227 41 0 chr6 114011562 114011659 -68403583 - MER5A DNA MER1_type -88 101 1 21 0 0 0 chr6 114011959 114011980 -68403262 + AT_rich Low_complexity Low_complexity 1 21 0 1990 103 4 0 chr6 114012479 114012742 -68402500 + AluSp SINE Alu 35 298 -15 1090 218 32 82 chr6 114013533 114013937 -68401305 - L1ME3A LINE L1 -234 5936 5553 246 62 0 0 chr6 114014892 114014924 -68400318 + (GGA)n Simple_repeat Simple_repeat 2 33 0 461 194 350 11 chr6 114015269 114015449 -68399793 + MIR SINE MIR 22 262 0 586 258 84 42 chr6 114015922 114016350 -68398892 - L2 LINE L2 -105 3208 2773 2670 101 22 14 chr6 114016432 114016788 -68398454 - THE1B LTR MaLR -1 363 5 2413 134 30 32 chr6 114017137 114017570 -68397672 - LTR32 LTR ERVL -31 440 9 555 198 95 0 chr6 114018162 114018288 -68396954 - MER103 DNA DNA -21 145 8 846 225 46 39 chr6 114020173 114020453 -68394789 - MER74A LTR ERVL 0 558 277 208 357 31 20 chr6 114020557 114020655 -68394587 + MER5A DNA MER1_type 28 126 -63 901 179 36 0 chr6 114020661 114020829 -68394413 + MLT2B1 LTR ERVL 1 174 -346 3337 246 34 33 chr6 114021006 114022063 -68393179 - L1ME3A LINE L1 -1381 4765 3708 1967 130 0 0 chr6 114022233 114022503 -68392739 - AluSx SINE Alu -28 284 15 209 311 50 42 chr6 114022532 114022651 -68392591 - MIR SINE MIR -57 151 32 2354 107 126 3 chr6 114023379 114023761 -68391481 + Tigger7 DNA MER2_type 2053 2481 -6 398 241 13 0 chr6 114023762 114023841 -68391401 - MIR SINE MIR -181 81 2 1232 0 0 0 chr6 114025874 114026002 -68389240 + L1PA5 LINE L1 6016 6143 -11 303 49 0 0 chr6 114026003 114026044 -68389198 + (TA)n Simple_repeat Simple_repeat 2 42 0 268 308 33 22 chr6 114026149 114026240 -68389002 - MER5B DNA MER1_type -86 92 1 5954 105 16 14 chr6 114026631 114028403 -68386839 - L1PA16 LINE L1 -9 6157 4365 892 205 4 25 chr6 114028180 114028428 -68386814 - L1M4 LINE L1 -1563 4583 4348 347 298 157 6 chr6 114028510 114028688 -68386554 + MIR3 SINE MIR 1 205 -3 1017 229 37 16 chr6 114028706 114028950 -68386292 + MIR SINE MIR 10 258 -4 349 266 0 88 chr6 114028974 114029087 -68386155 - MIR3 SINE MIR -23 185 83 354 289 48 60 chr6 114029560 114029726 -68385516 + MIR3 SINE MIR 20 183 -25 994 253 69 3 chr6 114029731 114029979 -68385263 + MIR SINE MIR 5 262 0 21 0 0 0 chr6 114030004 114030025 -68385217 + AT_rich Low_complexity Low_complexity 1 21 0 1015 280 251 12 chr6 114030442 114031260 -68383982 - L2 LINE L2 0 3313 2692 2036 138 7 7 chr6 114031260 114031564 -68383678 - AluSq SINE Alu -9 304 1 1015 280 251 12 chr6 114031564 114031825 -68383417 - L2 LINE L2 -621 2692 1962 891 227 37 44 chr6 114034236 114034531 -68380711 - L1MEc LINE L1 -6072 324 32 453 286 211 54 chr6 114035105 114035930 -68379312 + L2 LINE L2 2267 3212 -60 344 59 20 0 chr6 114037386 114037437 -68377805 + (TG)n Simple_repeat Simple_repeat 2 53 0 275 262 36 12 chr6 114037616 114037700 -68377542 + MIR SINE MIR 91 176 -86 368 248 223 5 chr6 114037700 114037902 -68377340 - LTR16A LTR ERVL -6 444 199 1168 124 0 0 chr6 114038334 114038495 -68376747 + AluSg/x SINE Alu 137 297 -15 267 270 74 58 chr6 114040549 114040860 -68374382 + L1ME LINE L1 894 1209 -4910 349 261 85 56 chr6 114041397 114041773 -68373469 + L1ME LINE L1 2135 2521 -3608 1102 153 0 6 chr6 114042086 114042256 -68372986 - FRAM SINE Alu -12 164 1 670 272 150 30 chr6 114042337 114042764 -68372478 + L1ME LINE L1 3070 3547 -2582 405 314 33 67 chr6 114042995 114043770 -68371472 + L1ME LINE L1 4750 5493 -656 1669 147 45 51 chr6 114044127 114044440 -68370802 + AluJb SINE Alu 1 311 -1 222 298 71 0 chr6 114045016 114045100 -68370142 - L3b LINE CR1 -183 1400 1311 1858 166 0 0 chr6 114046220 114046498 -68368744 + AluJb SINE Alu 1 278 -34 211 298 92 8 chr6 114046628 114046759 -68368483 - MIR3 SINE MIR -52 156 15 664 174 197 46 chr6 114047604 114047822 -68367420 - MIR SINE MIR 0 262 12 637 266 59 0 chr6 114048621 114048790 -68366452 - MIR SINE MIR -82 180 2 217 267 20 116 chr6 114048808 114048954 -68366288 - MIR SINE MIR -130 132 1 912 129 138 146 chr6 114048961 114049042 -68366200 - MLT2B1 LTR ERVL -20 500 420 459 0 0 0 chr6 114049042 114049093 -68366149 + (TA)n Simple_repeat Simple_repeat 2 52 0 912 129 138 146 chr6 114049093 114049360 -68365882 - MLT2B1 LTR ERVL -100 420 155 193 281 0 35 chr6 114050980 114051037 -68364205 + L2 LINE L2 3218 3272 0 946 226 9 5 chr6 114053032 114053244 -68361998 + MER58A DNA MER1_type 11 223 -1 2202 124 0 0 chr6 114054406 114054704 -68360538 + AluSx SINE Alu 1 298 -14 325 261 65 0 chr6 114055053 114055145 -68360097 - MIR3 SINE MIR -23 185 88 265 261 0 0 chr6 114056045 114056110 -68359132 - Charlie8 DNA MER1_type -9 2408 2344 2064 83 101 0 chr6 114057784 114058061 -68357181 + AluY SINE Alu 1 305 -6 190 313 125 0 chr6 114059170 114059250 -68355992 + L2 LINE L2 3147 3236 -36 2228 103 0 32 chr6 114059449 114059759 -68355483 - AluSg SINE Alu -10 300 1 427 338 80 25 chr6 114060009 114060246 -68354996 - MIR SINE MIR -9 253 4 1004 174 10 0 chr6 114061253 114061501 -68353741 + L1MB8 LINE L1 5172 5426 -743 * 1501 109 44 117 chr6 114061499 114061866 -68353376 + L1MB8 LINE L1 5833 6172 -6 2312 96 17 0 chr6 114062519 114062820 -68352422 + AluSg SINE Alu 1 306 -4 9921 145 39 60 chr6 114063495 114064683 -68350559 + Tigger2 DNA MER2_type 1 1129 -1589 1812 158 0 43 chr6 114064683 114064987 -68350255 + AluJb SINE Alu 21 311 -1 9921 145 39 60 chr6 114064987 114065908 -68349334 + Tigger2 DNA MER2_type 1129 2067 -651 13492 141 23 24 chr6 114065917 114068420 -68346822 + L1P LINE L1 11 2510 -3636 406 0 18 18 chr6 114068558 114068613 -68346629 + (TC)n Simple_repeat Simple_repeat 2 56 0 282 29 0 0 chr6 114068612 114068647 -68346595 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 1256 100 16 0 chr6 114068647 114068837 -68346405 + MER61D LTR ERV1 309 501 0 2126 133 0 10 chr6 114068962 114069262 -68345980 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr6 114069530 114069560 -68345682 + AT_rich Low_complexity Low_complexity 1 30 0 1218 89 80 14 chr6 114072053 114072266 -68342976 + Tigger2a DNA MER2_type 3 229 -205 1411 271 119 38 chr6 114072492 114073587 -68341655 - L1ME3A LINE L1 -220 5950 4649 1705 150 23 4 chr6 114073587 114073853 -68341389 - AluSx SINE Alu -41 271 1 1411 271 119 38 chr6 114073853 114074585 -68340657 - L1ME3A LINE L1 -1521 4649 3977 2231 91 0 3 chr6 114074592 114074901 -68340341 - L1PB1 LINE L1 -3 6148 5841 1065 84 0 0 chr6 114075002 114075133 -68340109 - AluSq/x SINE Alu -182 131 1 2969 174 21 8 chr6 114075133 114075794 -68339448 - L1 LINE L1 -1349 4797 4128 267 205 128 51 chr6 114075841 114075958 -68339284 - L1 LINE L1 -2218 3928 3803 435 194 24 58 chr6 114075975 114076109 -68339133 + MLT1D LTR MaLR 1 192 -462 441 216 0 0 chr6 114276118 114276206 -68139036 - AluJo/FLAM SINE Alu -198 114 27 1795 222 56 89 chr6 114276289 114276735 -68138507 + L1MC5 LINE L1 6710 7118 -843 2163 108 7 7 chr6 114276735 114277040 -68138202 + AluSx SINE Alu 1 305 -7 1795 222 56 89 chr6 114277040 114277417 -68137825 + L1MC5 LINE L1 7118 7506 -455 592 222 29 130 chr6 114277418 114277431 -68137811 + MER93a LTR ERV1 120 133 -269 2238 104 0 7 chr6 114277431 114277738 -68137504 + AluSq SINE Alu 1 305 -8 592 222 29 130 chr6 114277738 114278039 -68137203 + MER93a LTR ERV1 133 402 0 2009 47 94 0 chr6 114279533 114279821 -68135421 - AluY SINE Alu 0 312 1 1077 141 151 5 chr6 114279954 114280139 -68135103 - AluJb SINE Alu -23 289 78 1928 148 48 3 chr6 114280244 114280535 -68134707 + AluJo SINE Alu 7 310 -2 1264 228 183 47 chr6 114280871 114281224 -68134018 - L2 LINE L2 -1181 2133 1829 2408 82 26 0 chr6 114281224 114281527 -68133715 - AluSx SINE Alu -1 311 1 1264 228 183 47 chr6 114281527 114281770 -68133472 - L2 LINE L2 -1485 1829 1456 252 0 0 0 chr6 114283315 114283343 -68131899 + (T)n Simple_repeat Simple_repeat 1 28 0 476 302 127 19 chr6 114283650 114283862 -68131380 - MIR SINE MIR -16 246 12 21 0 0 0 chr6 114284026 114284047 -68131195 + AT_rich Low_complexity Low_complexity 1 21 0 1547 164 63 3 chr6 114284351 114284637 -68130605 + AluJo SINE Alu 1 303 -9 2059 132 3 6 chr6 114284732 114285043 -68130199 - AluY SINE Alu -1 310 1 24 96 0 0 chr6 114285822 114285895 -68129347 + AT_rich Low_complexity Low_complexity 1 73 0 765 154 0 0 chr6 114285896 114286013 -68129229 + FLAM_C SINE Alu 1 117 -16 2219 112 0 16 chr6 114287645 114287957 -68127285 - AluSg SINE Alu -3 307 1 1456 233 114 13 chr6 114288318 114288774 -68126468 - L1MC4a LINE L1 -1886 5922 5421 972 252 80 19 chr6 114288769 114289403 -68125839 + L1MC4 LINE L1 6837 7558 -484 * 1746 153 36 0 chr6 114289407 114289741 -68125501 + L1MDa LINE L1 1846 2191 -4349 566 240 64 84 chr6 114289817 114290175 -68125067 + L1MC4 LINE L1 7691 8041 -1 2554 121 33 17 chr6 114290240 114290660 -68124582 + MSTA LTR MaLR 2 428 0 2390 82 3 22 chr6 114291978 114292297 -68122945 + AluSp SINE Alu 1 313 0 1984 85 11 21 chr6 114292576 114292887 -68122355 + AluSg SINE Alu 1 308 0 247 186 0 0 chr6 114292940 114292983 -68122259 + L1MEc LINE L1 41 83 -6313 1283 197 126 46 chr6 114292984 114293350 -68121892 + MSTD LTR MaLR 1 395 -1 3757 255 70 36 chr6 114293404 114293517 -68121725 + L1MEc LINE L1 89 197 -6199 933 179 143 44 chr6 114293517 114293790 -68121452 + AluJb SINE Alu 1 300 -2 3757 255 70 36 chr6 114293790 114294508 -68120734 + L1MEc LINE L1 197 889 -5507 2139 138 0 0 chr6 114294508 114294806 -68120436 - AluSx SINE Alu -14 298 1 3757 255 70 36 chr6 114294806 114295421 -68119821 + L1MEc LINE L1 889 1606 -4790 942 151 6 19 chr6 114295421 114295580 -68119662 - FRAM SINE Alu -9 157 1 3757 255 70 36 chr6 114295580 114295863 -68119379 + L1MEc LINE L1 1606 1878 -4518 339 215 66 58 chr6 114295863 114295984 -68119258 + L1MEc LINE L1 2159 2280 -4116 2327 98 3 0 chr6 114295986 114296282 -68118960 + AluSg SINE Alu 1 297 -13 2337 88 7 0 chr6 114296704 114297001 -68118241 - AluSq SINE Alu -14 299 1 1876 164 3 0 chr6 114297033 114297325 -68117917 + AluJo SINE Alu 1 293 -19 1273 203 84 12 chr6 114297729 114298050 -68117192 + MER2 DNA MER2_type 1 344 0 1157 135 6 0 chr6 114298455 114298625 -68116617 - AluSg/x SINE Alu -11 301 131 211 269 246 8 chr6 114298773 114298907 -68116335 - L2 LINE L2 0 3272 3107 2438 53 13 10 chr6 114299620 114299919 -68115323 - AluY SINE Alu -11 300 1 387 333 82 0 chr6 114299945 114300104 -68115138 - MIR SINE MIR -70 192 21 1816 154 27 10 chr6 114300143 114300442 -68114800 - AluJo SINE Alu -8 304 1 1026 153 13 74 chr6 114300495 114300724 -68114518 + MER20 DNA MER1_type 1 215 -4 1071 217 9 5 chr6 114300956 114301173 -68114069 + MER58A DNA MER1_type 2 219 -5 752 229 18 12 chr6 114301190 114301356 -68113886 - MIR SINE MIR -75 187 21 369 240 247 7 chr6 114301870 114302141 -68113101 - L1ME4a LINE L1 -1 6120 5785 225 270 24 32 chr6 114302349 114302475 -68112767 - L1ME4a LINE L1 -369 5752 5628 295 286 0 0 chr6 114302484 114302554 -68112688 - L1ME4a LINE L1 -522 5599 5530 1347 144 123 3 chr6 114302770 114303054 -68112188 + L1MB2 LINE L1 5853 6170 -1 24 0 0 0 chr6 114303101 114303125 -68112117 + AT_rich Low_complexity Low_complexity 1 24 0 355 228 20 0 chr6 114303276 114303377 -68111865 - L1MC4a LINE L1 -1913 5895 5793 587 211 18 136 chr6 114305355 114305677 -68109565 - L1MC4 LINE L1 -6 8036 7766 2392 71 3 0 chr6 114305677 114305972 -68109270 - AluSc SINE Alu -13 296 1 587 211 18 136 chr6 114305972 114306038 -68109204 - L1MC4 LINE L1 -276 7766 7694 975 114 9 47 chr6 114306155 114306366 -68108876 - AluY SINE Alu -14 297 5 1063 221 31 34 chr6 114306369 114306672 -68108570 - L1ME4a LINE L1 -728 5438 5140 2608 62 0 0 chr6 114306672 114306981 -68108261 - AluY SINE Alu -2 309 1 1063 221 31 34 chr6 114306981 114307070 -68108172 - L1ME4a LINE L1 -1026 5140 5052 887 150 0 14 chr6 114307071 114307211 -68108031 - FLAM_C SINE Alu -4 139 2 678 239 22 5 chr6 114307308 114307492 -68107750 - L1MC4 LINE L1 -500 7542 7356 2986 217 92 55 chr6 114307685 114308014 -68107228 + L1ME LINE L1 4042 4357 -1809 2373 93 3 0 chr6 114308014 114308316 -68106926 + AluSg SINE Alu 5 307 -3 2986 217 92 55 chr6 114308316 114308911 -68106331 + L1ME LINE L1 4357 4928 -1238 2034 102 7 31 chr6 114308911 114309230 -68106012 + AluSq SINE Alu 1 312 0 2986 217 92 55 chr6 114309230 114309273 -68105969 + L1ME LINE L1 4928 4968 -1198 716 218 0 0 chr6 114309273 114309406 -68105836 + FLAM_A SINE Alu 1 133 0 511 260 39 0 chr6 114309409 114309536 -68105706 + FLAM_C SINE Alu 1 132 -1 2986 217 92 55 chr6 114309536 114309558 -68105684 + L1ME LINE L1 4969 4989 -1177 2095 137 0 6 chr6 114309558 114309873 -68105369 + AluSq SINE Alu 1 313 0 2986 217 92 55 chr6 114309873 114310031 -68105211 + L1ME LINE L1 4989 5140 -1026 2274 87 0 0 chr6 114310031 114310320 -68104922 - AluSp SINE Alu -12 301 13 2986 217 92 55 chr6 114310320 114310509 -68104733 + L1ME LINE L1 5140 5460 -706 2011 129 4 0 chr6 114311374 114311685 -68103557 + AluSx SINE Alu 1 312 0 890 138 0 0 chr6 114312417 114312540 -68102702 - FLAM_A SINE Alu -7 135 13 597 184 44 146 chr6 114314223 114314305 -68100937 - MIR SINE MIR -13 249 160 2523 69 7 0 chr6 114314305 114314609 -68100633 + AluSc SINE Alu 1 306 -3 597 184 44 146 chr6 114314609 114314732 -68100510 - MIR SINE MIR -102 160 65 2281 109 3 0 chr6 114315125 114315427 -68099815 + AluSp SINE Alu 1 303 -10 704 293 145 48 chr6 114316026 114316549 -68098693 + L2 LINE L2 339 912 -2402 1038 168 35 77 chr6 114316551 114316837 -68098405 + MLT1E3 LTR MaLR 351 624 0 613 216 165 69 chr6 114316965 114317110 -68098132 - MIR SINE MIR -21 241 67 2469 87 0 0 chr6 114317110 114317410 -68097832 + AluSc SINE Alu 1 300 -9 613 216 165 69 chr6 114317410 114317482 -68097760 - MIR SINE MIR -195 67 3 1287 121 32 81 chr6 114317483 114317731 -68097511 - MER46A DNA MER2_type 0 236 1 2373 79 7 0 chr6 114317844 114318136 -68097106 - AluSg SINE Alu -16 294 1 2974 270 96 30 chr6 114318226 114318944 -68096298 + L2 LINE L2 1822 2491 -822 1810 183 3 0 chr6 114318944 114319244 -68095998 - AluJb SINE Alu -11 301 1 2974 270 96 30 chr6 114319244 114319912 -68095330 + L2 LINE L2 2491 3311 -2 686 150 8 0 chr6 114320733 114320853 -68094389 + MER65A LTR ERV1 1 121 -324 6403 89 24 38 chr6 114320870 114321213 -68094029 + L1MA3 LINE L1 5254 5600 -705 879 150 0 0 chr6 114321213 114321340 -68093902 + FLAM_C SINE Alu 1 127 -6 6403 89 24 38 chr6 114321340 114322058 -68093184 + L1MA3 LINE L1 5600 6300 -5 1460 174 49 18 chr6 114322065 114322392 -68092850 + MER65A LTR ERV1 109 445 0 2606 48 0 0 chr6 114322474 114322783 -68092459 - AluY SINE Alu -1 310 2 188 319 104 30 chr6 114323021 114323156 -68092086 - MER5A DNA MER1_type -25 164 20 240 385 58 52 chr6 114323194 114323594 -68091648 - L2 LINE L2 -723 2591 2190 2093 92 14 7 chr6 114325249 114325541 -68089701 - AluSx SINE Alu -18 294 1 610 161 54 18 chr6 114325721 114325833 -68089409 + AluSg/x SINE Alu 181 296 -14 2274 108 0 0 chr6 114325835 114326131 -68089111 + AluSc SINE Alu 1 296 -13 233 298 10 39 chr6 114326465 114326569 -68088673 + MARNA DNA Mariner 380 480 -106 3155 99 52 0 chr6 114326651 114327116 -68088126 - L1PA13 LINE L1 -19 6144 5656 1954 179 45 75 chr6 114327396 114327903 -68087339 - LTR22B LTR ERVK 0 492 1 428 237 237 0 chr6 114328288 114328427 -68086815 - MIR SINE MIR -41 221 50 1219 134 9 46 chr6 114329639 114329786 -68085456 - Tigger2a DNA MER2_type -2274 444 306 2166 93 0 53 chr6 114329786 114330088 -68085154 + AluSg SINE Alu 1 286 -24 1219 134 9 46 chr6 114330088 114330156 -68085086 - Tigger2a DNA MER2_type -2412 306 237 317 104 0 0 chr6 114330157 114330205 -68085037 - Tigger2a DNA MER2_type -160 284 237 1375 127 92 39 chr6 114330206 114330278 -68084964 - Tigger2a DNA MER2_type -2434 274 207 2647 48 0 6 chr6 114330278 114330591 -68084651 + AluY SINE Alu 1 311 0 1375 127 92 39 chr6 114330591 114330778 -68084464 - Tigger2a DNA MER2_type -2501 207 1 301 308 0 0 chr6 114331642 114331733 -68083509 + MIR SINE MIR 172 262 0 230 290 173 27 chr6 114332585 114332698 -68082544 + MIR3 SINE MIR 8 130 -117 2167 137 38 38 chr6 114332953 114333318 -68081924 - MLT1A1 LTR MaLR 0 365 1 2151 128 0 0 chr6 114333973 114334277 -68080965 + AluSc SINE Alu 1 304 -5 938 117 0 0 chr6 114334555 114334683 -68080559 + AluSg/x SINE Alu 141 268 -44 471 355 151 23 chr6 114335340 114335864 -68079378 + L2 LINE L2 1824 2414 -900 716 221 20 72 chr6 114335910 114336024 -68079218 - MER69 DNA AcHobo -407 2119 2023 3623 128 77 5 chr6 114336024 114336593 -68078649 - MER4B LTR ERV1 0 610 1 716 221 20 72 chr6 114336593 114336727 -68078515 - MER69 DNA AcHobo -503 2023 1884 * 1236 211 97 38 chr6 114336710 114337139 -68078103 - MER69 DNA AcHobo -639 587 111 1722 183 162 37 chr6 114337153 114337640 -68077602 - LTR10A LTR ERV1 -61 548 1 350 195 230 0 chr6 114337640 114337724 -68077518 - MER69 DNA AcHobo -1115 111 8 2436 84 7 0 chr6 114337777 114338085 -68077157 - AluSx SINE Alu -2 310 1 2341 78 0 7 chr6 114339827 114340122 -68075120 + AluSx SINE Alu 2 294 -18 1549 150 112 11 chr6 114340649 114340916 -68074326 - AluJo SINE Alu -18 294 1 180 365 135 16 chr6 114340933 114341059 -68074183 - L2 LINE L2 -10 3262 3122 384 126 78 126 chr6 114341440 114341543 -68073699 - LTR48B LTR ERV1 0 787 690 5895 171 35 85 chr6 114341553 114342374 -68072868 - L1MA5 LINE L1 0 7362 6502 728 112 31 0 chr6 114342374 114342472 -68072770 - U6 snRNA snRNA -4 103 3 5895 171 35 85 chr6 114342472 114343473 -68071769 - L1MA5 LINE L1 -860 6502 5453 662 110 0 11 chr6 114343473 114343564 -68071678 - AluJ/FLAM SINE Alu -221 91 2 5895 171 35 85 chr6 114343564 114343760 -68071482 - L1MA5 LINE L1 -1909 5453 5393 1780 169 10 3 chr6 114343760 114344050 -68071192 - AluSx SINE Alu -20 292 1 5895 171 35 85 chr6 114344050 114344252 -68070990 - L1MA5 LINE L1 -1969 5393 5182 1010 207 87 89 chr6 114344252 114344346 -68070896 - L1MA5 LINE L1 -5275 1934 1841 2484 74 0 13 chr6 114344346 114344657 -68070585 - AluY SINE Alu -3 308 2 1010 207 87 89 chr6 114344657 114344750 -68070492 - L1MA5 LINE L1 -5368 1841 1749 2097 108 28 0 chr6 114344750 114345036 -68070206 - AluSc SINE Alu -15 294 1 1010 207 87 89 chr6 114345036 114345263 -68069979 - L1MA5 LINE L1 -5460 1749 1520 1014 189 78 48 chr6 114345321 114345803 -68069439 - LTR48B LTR ERV1 -98 689 1 524 130 0 0 chr6 114347487 114347556 -68067686 - AluJ/FRAM SINE Alu -23 289 221 319 125 36 0 chr6 114347777 114347833 -68067409 + L1M4 LINE L1 4620 4677 -1469 * 4398 160 48 57 chr6 114347829 114348279 -68066963 + L1MB5 LINE L1 4540 4992 -1182 2099 150 3 0 chr6 114348279 114348585 -68066657 + AluSx SINE Alu 1 307 -5 4398 160 48 57 chr6 114348585 114349783 -68065459 + L1MB5 LINE L1 4992 6165 -9 1390 235 35 57 chr6 114350233 114350693 -68064549 + L1ME3A LINE L1 5514 5962 -208 227 326 78 21 chr6 114350754 114350947 -68064295 + L1ME3A LINE L1 5962 6165 -5 210 272 19 29 chr6 114351105 114351208 -68064034 + A-rich Low_complexity Low_complexity 2 103 0 439 283 73 110 chr6 114351275 114351294 -68063948 + HAL1b LINE L1 11 29 -1319 8131 28 0 1 chr6 114351294 114352496 -68062746 + L1PA2 LINE L1 4955 6155 0 439 283 73 110 chr6 114352496 114352548 -68062694 + HAL1b LINE L1 29 81 -1267 1904 147 20 0 chr6 114352548 114352847 -68062395 + AluJb SINE Alu 1 305 -7 439 283 73 110 chr6 114352847 114353527 -68061715 + HAL1b LINE L1 81 735 -613 1554 184 4 4 chr6 114353603 114353864 -68061378 - AluJo SINE Alu -25 287 27 247 246 0 29 chr6 114353865 114353934 -68061308 + L1MC4a LINE L1 6547 6613 -1195 2224 222 54 87 chr6 114353947 114354393 -68060849 + L1MC5 LINE L1 6710 7116 -845 2165 108 7 7 chr6 114354393 114354698 -68060544 + AluSx SINE Alu 1 305 -7 2224 222 54 87 chr6 114354698 114355089 -68060153 + L1MC5 LINE L1 7116 7519 -442 2125 109 6 16 chr6 114355089 114355402 -68059840 + AluSx SINE Alu 1 310 -2 1939 159 0 7 chr6 114355653 114355962 -68059280 - AluJb SINE Alu -1 311 5 304 165 177 25 chr6 114356533 114356612 -68058630 - L2 LINE L2 -8 3264 3174 22 70 0 0 chr6 114356881 114356924 -68058318 + AT_rich Low_complexity Low_complexity 1 43 0 2266 90 0 17 chr6 114357250 114357549 -68057693 - AluSq SINE Alu -18 295 2 553 270 278 0 chr6 114358868 114359109 -68056133 - L2 LINE L2 -2 3311 3004 283 190 40 80 chr6 114359123 114359223 -68056019 + L2 LINE L2 3216 3311 -2 302 308 22 11 chr6 114359224 114359315 -68055927 - L2 LINE L2 -329 2984 2893 2463 80 0 0 chr6 114359457 114359757 -68055485 - AluSg SINE Alu -10 300 1 1913 135 22 22 chr6 114359844 114360156 -68055086 - AluSx SINE Alu 0 312 1 342 336 129 25 chr6 114360202 114360488 -68054754 - L3 LINE CR1 -11 1566 1251 * 392 286 18 53 chr6 114360485 114360656 -68054586 - MIR3 SINE MIR -8 200 36 696 176 0 0 chr6 114360837 114360973 -68054269 + CT-rich Low_complexity Low_complexity 3 138 0 717 113 6 45 chr6 114361082 114361259 -68053983 + (TCC)n Simple_repeat Simple_repeat 2 171 0 2060 102 7 0 chr6 114361260 114361535 -68053707 - AluSp SINE Alu -36 277 1 413 113 0 175 chr6 114362095 114362192 -68053050 - MER20 DNA MER1_type 0 219 140 1004 261 16 8 chr6 114362778 114363035 -68052207 + MIR SINE MIR 4 262 0 1533 201 14 7 chr6 114363691 114363985 -68051257 + AluJo SINE Alu 1 296 -16 840 187 0 0 chr6 114365033 114365172 -68050070 - FLAM_C SINE Alu -4 139 1 395 253 0 0 chr6 114365423 114365514 -68049728 - MER94 DNA DNA -41 93 3 327 282 195 0 chr6 114365651 114365800 -68049442 - MIR SINE MIR -7 255 78 881 134 0 22 chr6 114366125 114366259 -68048983 + FLAM_C SINE Alu 1 131 -12 249 310 0 14 chr6 114366747 114366818 -68048424 - L2 LINE L2 -2 3270 3201 319 304 20 10 chr6 114367252 114367354 -68047888 - MIR3 SINE MIR -46 162 60 665 244 179 50 chr6 114369305 114369624 -68045618 - L1MC4a LINE L1 -1860 5948 5589 2238 107 10 0 chr6 114369626 114369926 -68045316 - AluSx SINE Alu -9 303 1 2598 60 0 0 chr6 114370130 114370430 -68044812 - AluY SINE Alu -11 300 1 853 183 0 0 chr6 114370450 114370581 -68044661 + FLAM_A SINE Alu 1 131 -2 1102 178 48 24 chr6 114371030 114371107 -68044135 + MER58C DNA MER1_type 2 76 -2344 2367 83 0 3 chr6 114371107 114371408 -68043834 - AluSc SINE Alu -9 300 1 1102 178 48 24 chr6 114371408 114371538 -68043704 + MER58C DNA MER1_type 76 214 -1 258 276 253 0 chr6 114372026 114372113 -68043129 - MIR SINE MIR -66 142 34 2376 133 160 22 chr6 114372344 114372788 -68042454 - MLT1D LTR MaLR 0 505 1 1691 163 12 53 chr6 114372890 114373209 -68042033 - AluJb SINE Alu -6 306 1 845 174 92 20 chr6 114373504 114373699 -68041543 + MER3 DNA MER1_type 1 209 0 319 301 39 0 chr6 114374550 114374653 -68040589 + MIR SINE MIR 40 146 -62 270 300 131 15 chr6 114375677 114375807 -68039435 - MER5A DNA MER1_type -2 187 43 2311 95 7 0 chr6 114375905 114376199 -68039043 - AluSx SINE Alu -16 296 1 283 229 197 8 chr6 114376293 114376415 -68038827 + MER117 DNA MER1_type 5 149 -48 781 238 95 5 chr6 114376617 114376827 -68038415 + MIR SINE MIR 9 237 -25 199 103 77 26 chr6 114376795 114376834 -68038408 + L2 LINE L2 3210 3250 -22 * 238 329 54 47 chr6 114377417 114377566 -68037676 - L2 LINE L2 -5 3308 3159 1820 150 37 7 chr6 114378651 114378945 -68036297 - AluJb SINE Alu -9 303 1 1847 125 43 11 chr6 114380840 114381119 -68034123 + AluJb SINE Alu 1 288 -24 26 30 0 0 chr6 114381161 114381194 -68034048 + AT_rich Low_complexity Low_complexity 1 33 0 1446 69 0 0 chr6 114383725 114383898 -68031344 + AluSg/x SINE Alu 135 307 -5 401 268 8 55 chr6 114384144 114384271 -68030971 + L2 LINE L2 3191 3311 -2 182 262 0 0 chr6 114384539 114384581 -68030661 + MIR SINE MIR 104 145 -63 2262 81 0 7 chr6 114385030 114385325 -68029917 - AluY SINE Alu -18 293 1 22 0 0 0 chr6 114385435 114385457 -68029785 + AT_rich Low_complexity Low_complexity 1 22 0 939 152 33 16 chr6 114385671 114385855 -68029387 + MER5A DNA MER1_type 1 187 -2 331 324 27 64 chr6 114386081 114386172 -68029070 + MIR SINE MIR 32 125 -137 207 0 0 0 chr6 114386172 114386195 -68029047 + (TTG)n Simple_repeat Simple_repeat 2 24 0 331 324 27 64 chr6 114386195 114386322 -68028920 + MIR SINE MIR 125 242 -20 1456 165 132 11 chr6 114387268 114387534 -68027708 + AluJb SINE Alu 1 298 -4 2256 83 0 7 chr6 114387576 114387864 -68027378 + AluSc SINE Alu 1 286 -23 216 0 0 0 chr6 114388226 114388250 -68026992 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1914 152 7 0 chr6 114390260 114390550 -68024692 - AluJb SINE Alu -20 292 1 2253 105 0 7 chr6 114390557 114390861 -68024381 - AluSq SINE Alu -11 302 1 1861 174 0 10 chr6 114391383 114391682 -68023560 - AluJb SINE Alu -16 296 1 2091 98 0 85 chr6 114392630 114392958 -68022284 + AluSx SINE Alu 1 300 -12 315 254 176 28 chr6 114394003 114394145 -68021097 + L1ME LINE L1 5393 5555 -566 225 241 74 0 chr6 114395071 114395125 -68020117 + MIR SINE MIR 90 147 -115 2202 119 0 28 chr6 114395157 114395476 -68019766 - AluSg SINE Alu 0 310 1 464 198 117 9 chr6 114395497 114395608 -68019634 - L2 LINE L2 -11 3302 3180 2018 136 14 0 chr6 114395735 114396029 -68019213 - AluSx SINE Alu -14 298 1 204 276 35 0 chr6 114396686 114396744 -68018498 + L2 LINE L2 3213 3272 0 2207 113 13 3 chr6 114397749 114398049 -68017193 - AluSx SINE Alu -9 303 1 24 32 0 0 chr6 114398100 114398131 -68017111 + AT_rich Low_complexity Low_complexity 1 31 0 3738 121 23 60 chr6 114398680 114399368 -68015874 + L1PA16 LINE L1 5500 6162 -4 300 235 154 29 chr6 114400048 114400184 -68015058 - MIR SINE MIR -42 220 68 277 301 72 0 chr6 114400153 114400236 -68015006 - L2 LINE L2 -29 3243 3155 * 284 252 37 47 chr6 114400287 114400394 -68014848 - MIR3 SINE MIR -101 107 2 27 0 0 0 chr6 114400744 114400771 -68014471 + AT_rich Low_complexity Low_complexity 1 27 0 921 121 8 0 chr6 114400771 114400895 -68014347 - AluSq/x SINE Alu -187 125 1 226 385 25 0 chr6 114400926 114401048 -68014194 + MIR3 SINE MIR 36 160 -48 3422 15 0 0 chr6 114401215 114401607 -68013635 + L1PA4 LINE L1 5761 6152 -3 185 222 30 126 chr6 114402799 114402934 -68012308 + L2 LINE L2 2970 3091 -181 256 232 18 0 chr6 114403001 114403057 -68012185 + L2 LINE L2 3251 3307 -6 264 100 0 0 chr6 114403141 114403181 -68012061 + (TG)n Simple_repeat Simple_repeat 2 41 0 1166 291 103 13 chr6 114404107 114404377 -68010865 + MLT1K LTR MaLR 5 249 -339 2007 144 0 3 chr6 114404377 114404669 -68010573 + AluJb SINE Alu 1 291 -21 1166 291 103 13 chr6 114404669 114404930 -68010312 + MLT1K LTR MaLR 249 584 -4 185 65 32 0 chr6 114406009 114406040 -68009202 + (TG)n Simple_repeat Simple_repeat 2 33 0 2192 92 4 4 chr6 114406306 114406587 -68008655 - AluSp SINE Alu -32 281 1 2005 125 11 4 chr6 114407027 114407374 -68007868 + AluSx SINE Alu 1 349 0 1911 146 11 4 chr6 114407403 114407723 -68007519 + AluSx SINE Alu 1 322 0 1921 166 10 0 chr6 114407752 114408048 -68007194 + AluJb SINE Alu 1 299 -13 260 158 18 0 chr6 114408161 114408218 -68007024 + (TA)n Simple_repeat Simple_repeat 1 58 0 180 238 0 0 chr6 114408640 114408703 -68006539 + (TA)n Simple_repeat Simple_repeat 2 64 0 281 214 74 128 chr6 114409004 114409247 -68005995 + MER102b DNA MER1_type 108 337 -4 23 68 0 0 chr6 114409498 114409542 -68005700 + AT_rich Low_complexity Low_complexity 1 44 0 273 250 130 46 chr6 114410047 114410155 -68005087 - L2 LINE L2 -19 3253 3137 506 228 195 7 chr6 114411272 114411421 -68003821 - MIR SINE MIR -71 191 15 2035 110 17 20 chr6 114411422 114411722 -68003520 - AluSx SINE Alu -13 299 1 745 215 53 29 chr6 114412543 114412752 -68002490 + L1ME3A LINE L1 5953 6166 -4 257 312 123 6 chr6 114413691 114413861 -68001381 + MARNA DNA Mariner 146 335 -251 600 273 66 52 chr6 114413924 114414695 -68000547 + L1MC4 LINE L1 7262 8042 0 280 320 107 13 chr6 114415003 114415153 -68000089 + MIR3 SINE MIR 40 203 -5 1895 249 156 30 chr6 114415994 114417089 -67998153 + L2 LINE L2 2074 3305 -8 2906 121 10 4 chr6 114417272 114417752 -67997490 + L1MA6 LINE L1 5319 5801 -499 1683 91 0 0 chr6 114417752 114417988 -67997254 + L1MA6 LINE L1 6058 6298 -2 341 257 88 0 chr6 114418211 114418347 -67996895 + L1ME3A LINE L1 6022 6169 -1 760 335 19 12 chr6 114418399 114418656 -67996586 - L3 LINE CR1 -75 1502 1244 457 188 67 7 chr6 114418914 114419063 -67996179 - Charlie7 DNA MER1_type -11 2601 2444 276 276 35 0 chr6 114419073 114419160 -67996082 - Charlie7 DNA MER1_type -2520 92 3 249 268 21 79 chr6 114420694 114420767 -67994475 + L1MC/D LINE L1 5609 5685 -436 2258 96 7 7 chr6 114420767 114421068 -67994174 + AluSx SINE Alu 1 301 -11 249 268 21 79 chr6 114421068 114421184 -67994058 + L1MC/D LINE L1 5685 5787 -334 2207 111 3 16 chr6 114423037 114423353 -67991889 - AluSx SINE Alu 0 312 1 2288 71 10 17 chr6 114425438 114425732 -67989510 - AluSc SINE Alu -17 292 1 2260 105 0 7 chr6 114425985 114426281 -67988961 + AluSx SINE Alu 5 298 -14 883 204 61 9 chr6 114426770 114427000 -67988242 + Charlie1 DNA MER1_type 1 242 -2519 461 225 25 0 chr6 114426983 114427103 -67988139 + Charlie1 DNA MER1_type 2622 2744 -17 * 2196 100 0 50 chr6 114427980 114428301 -67986941 + AluSg SINE Alu 1 305 -5 189 245 61 0 chr6 114428396 114428445 -67986797 + L2 LINE L2 3220 3271 -1 281 26 26 0 chr6 114430999 114431037 -67984205 + (TG)n Simple_repeat Simple_repeat 1 39 0 1756 140 22 25 chr6 114431049 114431327 -67983915 - AluJo SINE Alu -25 287 11 559 220 100 56 chr6 114431760 114432041 -67983201 - L1ME4a LINE L1 -80 6041 5751 443 306 0 0 chr6 114432187 114432295 -67982947 + MIR3 SINE MIR 52 159 -49 636 236 0 0 chr6 114432484 114432641 -67982601 + (TATATG)n Simple_repeat Simple_repeat 6 162 0 341 244 47 0 chr6 114432643 114432729 -67982513 + L1MC4 LINE L1 6614 6703 -1339 1815 144 4 7 chr6 114432729 114433006 -67982236 + AluJo SINE Alu 28 303 -9 504 296 52 0 chr6 114433135 114433270 -67981972 - MIR SINE MIR -119 143 2 2309 111 0 0 chr6 114433479 114433776 -67981466 + AluSx SINE Alu 1 297 -15 1925 128 11 3 chr6 114433922 114434256 -67980986 + AluJb SINE Alu 1 336 0 205 277 31 15 chr6 114436075 114436140 -67979102 + L2 LINE L2 3247 3312 -1 23 33 0 0 chr6 114437291 114437321 -67977921 + GC_rich Low_complexity Low_complexity 1 30 0 188 388 0 0 chr6 114440210 114440277 -67974965 - MIR3 SINE MIR -133 75 9 22 35 0 0 chr6 114441066 114441095 -67974147 + AT_rich Low_complexity Low_complexity 1 29 0 1585 184 66 61 chr6 114441219 114441659 -67973583 + L1ME1 LINE L1 5685 6126 -40 1802 164 14 0 chr6 114441773 114442048 -67973194 - AluJb SINE Alu -33 279 1 2356 111 7 0 chr6 114443260 114443566 -67971676 + AluSq SINE Alu 1 308 -5 21 0 0 0 chr6 114443608 114443629 -67971613 + AT_rich Low_complexity Low_complexity 1 21 0 217 308 122 9 chr6 114443655 114443762 -67971480 + L2 LINE L2 3184 3302 -11 1285 145 83 25 chr6 114444484 114444619 -67970623 + AluSx SINE Alu 1 127 -185 2356 82 10 3 chr6 114444619 114444912 -67970330 + AluSc SINE Alu 1 295 -14 1285 145 83 25 chr6 114444912 114445018 -67970224 + AluSx SINE Alu 127 256 -56 291 93 0 0 chr6 114445334 114445377 -67969865 + (CA)n Simple_repeat Simple_repeat 2 44 0 258 150 117 33 chr6 114445679 114445739 -67969503 + MER116 DNA Mariner 13 77 -3 31 26 0 0 chr6 114446133 114446171 -67969071 + AT_rich Low_complexity Low_complexity 1 38 0 231 196 0 0 chr6 114446354 114446400 -67968842 - L2 LINE L2 0 3313 3268 253 284 37 28 chr6 114446723 114446832 -67968410 + LTR33 LTR ERVL 42 151 -370 501 257 14 20 chr6 114447038 114447186 -67968056 - MER69A DNA AcHobo -2 175 29 561 139 35 26 chr6 114447194 114447309 -67967933 + LTR33 LTR ERVL 403 518 -3 666 243 102 25 chr6 114448749 114448984 -67966258 + L2 LINE L2 3054 3306 -7 5627 131 38 58 chr6 114449292 114450510 -67964732 + L1MA7 LINE L1 5095 6287 -4 28 29 0 0 chr6 114450510 114450545 -67964697 + AT_rich Low_complexity Low_complexity 1 35 0 2224 76 0 40 chr6 114450553 114450919 -67964323 + AluSx SINE Alu 1 312 0 2002 127 7 0 chr6 114451121 114451404 -67963838 - AluSq SINE Alu -12 301 17 364 113 0 0 chr6 114451591 114451644 -67963598 - Ricksha DNA DNA -1992 54 2 231 247 12 12 chr6 114451798 114451879 -67963363 - L1M LINE L1 -734 5428 5348 2191 100 0 32 chr6 114451894 114452204 -67963038 - AluSx SINE Alu -12 300 1 290 217 212 26 chr6 114452242 114452384 -67962858 - MIR SINE MIR -62 146 15 1866 124 28 96 chr6 114455606 114456034 -67959208 - L1MB2 LINE L1 -4 6167 5769 4095 176 78 5 chr6 114456034 114456853 -67958389 - L1PA11 LINE L1 -1 6173 5295 24 0 0 0 chr6 114457026 114457050 -67958192 + AT_rich Low_complexity Low_complexity 1 24 0 205 200 0 0 chr6 114457150 114457190 -67958052 - L2 LINE L2 0 3272 3233 500 147 0 11 chr6 114457441 114457536 -67957706 + (TTCC)n Simple_repeat Simple_repeat 2 95 0 1679 111 146 32 chr6 114460196 114460476 -67954766 - AluSx SINE Alu 0 312 1 2956 273 131 48 chr6 114460647 114462417 -67952825 + L1MA6 LINE L1 2 1918 -4871 4108 222 76 14 chr6 114462430 114464035 -67951207 + L1MA6 LINE L1 1883 3772 -3016 * 5600 152 40 25 chr6 114464031 114465014 -67950228 + L1MA6 LINE L1 4280 5247 -1695 1640 193 0 17 chr6 114465014 114465309 -67949933 - AluJo SINE Alu -22 290 1 5600 152 40 25 chr6 114465309 114465393 -67949849 + L1MA6 LINE L1 5247 5328 -1614 1664 163 0 78 chr6 114465393 114465724 -67949518 + AluJo SINE Alu 1 305 -7 5600 152 40 25 chr6 114465724 114466610 -67948632 + L1MA6 LINE L1 5328 6199 -743 183 42 0 0 chr6 114466610 114466634 -67948608 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 207 0 0 0 chr6 114466633 114466656 -67948586 + (CA)n Simple_repeat Simple_repeat 2 24 0 5600 152 40 25 chr6 114466634 114467155 -67948087 + L1MA6 LINE L1 6199 6937 -5 2353 88 0 22 chr6 114467201 114467519 -67947723 - AluY SINE Alu 0 311 1 1475 161 173 43 chr6 114467522 114467959 -67947283 + MLT1E1 LTR MaLR 11 513 -111 550 255 173 36 chr6 114468159 114468465 -67946777 - LTR33 LTR ERVL -169 352 5 2781 10 0 3 chr6 114468739 114469044 -67946198 + AluYa5 SINE Alu 1 304 -7 1872 146 4 0 chr6 114469044 114469317 -67945925 - AluSx SINE Alu -31 281 7 2098 110 7 17 chr6 114469329 114469630 -67945612 - AluY SINE Alu -13 298 1 2132 158 44 13 chr6 114469873 114470554 -67944688 + L1MB7 LINE L1 4919 5626 -552 699 194 7 0 chr6 114470557 114470696 -67944546 + MLT1A2 LTR MaLR 4 143 -231 477 143 52 0 chr6 114470691 114470768 -67944474 + MLT1A2 LTR MaLR 294 374 0 * 1651 128 99 0 chr6 114470768 114471041 -67944201 + L1MB7 LINE L1 5622 5921 -263 2482 131 9 0 chr6 114471042 114471386 -67943856 - MER1A DNA MER1_type -182 347 1 797 239 150 9 chr6 114472972 114473198 -67942044 - MIR SINE MIR 0 262 5 303 269 222 0 chr6 114473575 114473683 -67941559 - MIR3 SINE MIR -3 205 74 220 329 110 33 chr6 114474197 114474612 -67940630 + L2 LINE L2 2632 3083 -189 583 278 61 8 chr6 114475057 114475400 -67939842 - MER115 DNA AcHobo -8 685 242 685 225 94 0 chr6 114475664 114475802 -67939440 - FRAM SINE Alu -15 151 1 924 155 6 30 chr6 114476492 114476660 -67938582 - L1MC3 LINE L1 -1095 6690 6527 335 193 6 127 chr6 114476675 114476841 -67938401 + L1MC5 LINE L1 7786 7931 -30 1933 151 0 35 chr6 114477083 114477400 -67937842 - AluJb SINE Alu -6 306 1 185 264 75 0 chr6 114479140 114479193 -67936049 + MIR SINE MIR 124 180 -82 1207 123 0 0 chr6 114479431 114479594 -67935648 - AluSg/x SINE Alu -20 289 127 909 185 0 6 chr6 114479674 114479836 -67935406 - AluJb SINE Alu -16 296 136 216 206 32 16 chr6 114480065 114480128 -67935114 + L2 LINE L2 2704 2767 -547 868 312 124 28 chr6 114480521 114481167 -67934075 - L2 LINE L2 0 3313 2614 1050 166 0 0 chr6 114481317 114481474 -67933768 - AluJb SINE Alu -24 288 132 511 243 13 23 chr6 114482063 114482296 -67932946 - MER46C DNA MER2_type 0 338 59 1919 174 0 28 chr6 114482511 114482832 -67932410 - AluJb SINE Alu 0 312 1 181 231 39 0 chr6 114484325 114484377 -67930865 - MIR3 SINE MIR -4 204 151 390 265 20 60 chr6 114484585 114484736 -67930506 - MIR3 SINE MIR -41 167 23 225 370 102 53 chr6 114484752 114484998 -67930244 - L2 LINE L2 -30 3242 2985 2388 81 3 3 chr6 114485504 114485800 -67929442 - AluSg SINE Alu -14 296 1 1740 180 3 3 chr6 114486847 114487141 -67928101 - AluJo SINE Alu -18 294 1 2248 35 42 24 chr6 114487554 114487890 -67927352 + AluY SINE Alu 1 311 0 1991 129 7 0 chr6 114488928 114489240 -67926002 + AluSg SINE Alu 1 314 0 593 245 101 103 chr6 114489621 114489722 -67925520 + L1ME4a LINE L1 5299 5399 -722 1867 39 0 22 chr6 114489722 114489951 -67925291 + AluY SINE Alu 1 224 -87 593 245 101 103 chr6 114489951 114489968 -67925274 + L1ME4a LINE L1 5399 5415 -706 219 36 0 0 chr6 114489968 114489996 -67925246 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 593 245 101 103 chr6 114489996 114490436 -67924806 + L1ME4a LINE L1 5415 5861 -260 243 364 73 45 chr6 114491470 114491717 -67923525 - L2 LINE L2 -84 3188 2935 389 311 71 22 chr6 114491975 114492158 -67923084 - L1MC4a LINE L1 -1747 6061 5870 2612 143 7 36 chr6 114492498 114492939 -67922303 + MSTC LTR MaLR 1 428 0 2072 140 0 26 chr6 114493551 114493859 -67921383 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr6 114494466 114494489 -67920753 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 114494814 114494836 -67920406 + AT_rich Low_complexity Low_complexity 1 22 0 862 20 0 0 chr6 114495085 114495184 -67920058 - HY3 scRNA scRNA -1 100 2 26 82 0 0 chr6 114496590 114496651 -67918591 + AT_rich Low_complexity Low_complexity 1 61 0 542 65 19 201 chr6 114496809 114496963 -67918279 - L1MB2 LINE L1 -1 6170 6045 2038 110 6 54 chr6 114497571 114497888 -67917354 - AluSx SINE Alu -10 302 1 305 239 19 19 chr6 114497920 114498075 -67917167 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 323 262 101 13 chr6 114498928 114499077 -67916165 + MLT1L LTR MaLR 49 210 -405 327 223 39 19 chr6 114499390 114499493 -67915749 + MLT1L LTR MaLR 507 611 -4 2157 103 34 7 chr6 114499778 114500070 -67915172 - AluSx SINE Alu -12 300 1 610 118 0 0 chr6 114500549 114500634 -67914608 - 5S rRNA rRNA -35 86 2 1492 83 103 0 chr6 114502413 114502439 -67912803 - L1MA2 LINE L1 0 6304 6282 237 33 0 0 chr6 114502439 114502469 -67912773 + (TA)n Simple_repeat Simple_repeat 2 31 0 1492 83 103 0 chr6 114502469 114502684 -67912558 - L1MA2 LINE L1 -22 6282 6038 232 237 0 26 chr6 114503191 114503267 -67911975 - MER69 DNA AcHobo -4 2522 2449 218 372 18 37 chr6 114503876 114504040 -67911202 - MIR3 SINE MIR -4 204 44 642 250 159 0 chr6 114504263 114504439 -67910803 + MIR SINE MIR 58 261 -1 570 200 71 58 chr6 114504545 114504700 -67910542 - MIR3 SINE MIR -15 193 37 222 37 0 0 chr6 114505004 114505031 -67910211 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 827 149 0 0 chr6 114505037 114505151 -67910091 - FLAM_C SINE Alu -19 124 11 1934 84 0 0 chr6 114506018 114506293 -67908949 + L1MA3 LINE L1 6031 6305 0 205 321 0 0 chr6 114507280 114507333 -67907909 + L2 LINE L2 3220 3272 0 2185 121 0 7 chr6 114509446 114509744 -67905498 + AluSx SINE Alu 1 296 -16 234 91 0 0 chr6 114509744 114509777 -67905465 + (GA)n Simple_repeat Simple_repeat 1 33 0 358 160 27 0 chr6 114510050 114510125 -67905117 - MER116 DNA Mariner -2 78 2 21 57 0 0 chr6 114510378 114510413 -67904829 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr6 114510726 114510750 -67904492 + AT_rich Low_complexity Low_complexity 1 24 0 758 147 0 70 chr6 114510952 114511095 -67904147 - FLAM_C SINE Alu 0 133 1 735 237 52 20 chr6 114511438 114511687 -67903555 + MLT1C LTR MaLR 211 467 0 1777 189 0 16 chr6 114512276 114512593 -67902649 + AluJo SINE Alu 1 312 0 721 210 102 6 chr6 114512882 114513039 -67902203 - FAM SINE Alu -3 172 1 474 290 63 19 chr6 114513095 114513364 -67901878 + L1ME4a LINE L1 5536 5816 -305 2320 54 17 0 chr6 114513420 114513717 -67901525 + AluY SINE Alu 1 302 -9 321 203 237 0 chr6 114513755 114513873 -67901369 + L1ME4a LINE L1 5973 6118 -3 21 0 0 0 chr6 114513987 114514008 -67901234 + AT_rich Low_complexity Low_complexity 1 21 0 1514 154 138 4 chr6 114514146 114514406 -67900836 + AluSx SINE Alu 1 295 -17 25 0 0 0 chr6 114514406 114514431 -67900811 + AT_rich Low_complexity Low_complexity 1 25 0 1418 196 51 11 chr6 114514548 114514824 -67900418 + AluJo SINE Alu 1 287 -25 1019 203 9 22 chr6 114515207 114515434 -67899808 + MER58A DNA MER1_type 1 224 0 264 209 37 34 chr6 114515673 114515818 -67899424 + MLT1F1 LTR MaLR 1 197 -370 288 120 0 0 chr6 114515818 114515868 -67899374 + (TC)n Simple_repeat Simple_repeat 2 51 0 1452 192 19 0 chr6 114515886 114516157 -67899085 + MLT1F1 LTR MaLR 286 561 -6 335 330 18 9 chr6 114516206 114516318 -67898924 + L1MC4 LINE L1 6614 6726 -1316 2278 119 0 3 chr6 114516874 114517185 -67898057 + AluSg SINE Alu 1 310 0 377 160 27 0 chr6 114518499 114518574 -67896668 - L1PA16 LINE L1 -3 6163 6087 2286 106 0 0 chr6 114518852 114519153 -67896089 + AluSx SINE Alu 2 302 -10 247 305 21 0 chr6 114519460 114519555 -67895687 + MLT1H1 LTR MaLR 459 555 0 1580 155 115 11 chr6 114519587 114519865 -67895377 - AluJb SINE Alu -5 307 1 22 0 0 0 chr6 114519872 114519894 -67895348 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 114520007 114520035 -67895207 + AT_rich Low_complexity Low_complexity 1 28 0 833 228 75 43 chr6 114520136 114520390 -67894852 - MIR SINE MIR 0 262 1 536 289 19 6 chr6 114521304 114521479 -67893763 + MIR SINE MIR 36 212 -50 2460 232 157 147 chr6 114521803 114524075 -67891167 - L2 LINE L2 -68 3245 997 2178 103 3 23 chr6 114524075 114524377 -67890865 + AluSq SINE Alu 1 296 -17 2460 232 157 147 chr6 114524377 114525251 -67889991 - L2 LINE L2 -2316 997 67 2112 121 3 0 chr6 114525251 114525541 -67889701 + AluSq SINE Alu 1 291 -22 2460 232 157 147 chr6 114525541 114525553 -67889689 - L2 LINE L2 -3246 67 57 2225 129 3 0 chr6 114526008 114526317 -67888925 + AluJb SINE Alu 1 310 -2 207 0 0 0 chr6 114526738 114526761 -67888481 + (A)n Simple_repeat Simple_repeat 1 23 0 1633 171 3 14 chr6 114527378 114527691 -67887551 + AluJb SINE Alu 1 310 0 2186 108 44 42 chr6 114527935 114528296 -67886946 + THE1B LTR MaLR 3 364 0 809 50 0 0 chr6 114529207 114529307 -67885935 - HY3 scRNA scRNA -1 100 1 1039 213 44 109 chr6 114529398 114529895 -67885347 + MER4C LTR ERV1 1 465 0 1974 149 0 3 chr6 114530329 114530617 -67884625 + AluJb SINE Alu 1 287 -25 2826 168 27 67 chr6 114530678 114531316 -67883926 + LTR9 LTR ERV1 1 612 0 2405 206 127 35 chr6 114531532 114532395 -67882847 + LTR28 LTR ERV1 3 1020 0 417 245 140 14 chr6 114532577 114532720 -67882522 + MER96 DNA MER1_type? 1 161 -14 27 29 0 0 chr6 114532783 114532817 -67882425 + AT_rich Low_complexity Low_complexity 1 34 0 1157 163 56 0 chr6 114532817 114533013 -67882229 + AluJb SINE Alu 100 306 -6 273 226 20 29 chr6 114533257 114533359 -67881883 - L1ME LINE L1 -369 5793 5693 1800 159 3 7 chr6 114534274 114534557 -67880685 - AluJb SINE Alu -17 295 14 297 320 63 35 chr6 114535711 114536027 -67879215 - Charlie4 DNA MER1_type -1216 745 421 2119 132 0 3 chr6 114536323 114536618 -67878624 - AluSx SINE Alu -18 294 1 277 339 25 8 chr6 114536652 114536770 -67878472 + MLT1K LTR MaLR 33 152 -436 231 171 0 0 chr6 114536771 114536806 -67878436 - MLT1K LTR MaLR -383 205 171 394 245 136 78 chr6 114536836 114537093 -67878149 + MLT1K LTR MaLR 285 556 -32 376 292 144 48 chr6 114537597 114537878 -67877364 + L1MEd LINE L1 59 374 -5745 2365 188 44 75 chr6 114537878 114538448 -67876794 + MLT2B3 LTR ERVL 1 552 -2 376 292 144 48 chr6 114538448 114538478 -67876764 + L1MEd LINE L1 374 400 -5719 32412 95 12 23 chr6 114538989 114545432 -67869810 - L1PA7 LINE L1 -1 6468 1 216 306 76 28 chr6 114545722 114545866 -67869376 + MIR SINE MIR 1 151 -111 495 280 124 27 chr6 114546239 114546464 -67868778 - MER112 DNA MER1_type -7 253 7 296 320 87 23 chr6 114546479 114546651 -67868591 + L2 LINE L2 2701 2883 -431 1418 178 100 7 chr6 114546659 114546820 -67868422 - AluJo SINE Alu -5 307 162 180 0 0 0 chr6 114546820 114546840 -67868402 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1418 178 100 7 chr6 114546840 114546959 -67868283 - AluJo SINE Alu -150 162 1 347 246 74 57 chr6 114546971 114547093 -67868149 - L2 LINE L2 0 3313 3190 6649 21 0 0 chr6 114547309 114548073 -67867169 - L1P LINE L1 -1100 5046 4283 4833 13 0 0 chr6 114548070 114548606 -67866636 + L1HS LINE L1 5619 6154 -1 * 387 316 134 53 chr6 114549049 114549369 -67865873 + L2 LINE L2 2896 3241 -31 1695 172 0 65 chr6 114549737 114549855 -67865387 + AluJo SINE Alu 5 129 -183 2325 96 3 3 chr6 114549855 114550158 -67865084 - AluSx SINE Alu -9 303 1 1695 172 0 65 chr6 114550158 114550364 -67864878 + AluJo SINE Alu 129 308 -4 273 419 110 7 chr6 114551062 114551198 -67864044 - L2 LINE L2 0 3272 3123 714 174 0 0 chr6 114551540 114551675 -67863567 - AluJ SINE Alu 0 311 177 * 722 162 0 0 chr6 114551674 114551779 -67863463 - AluJ SINE Alu -206 106 2 1614 133 43 36 chr6 114552622 114552900 -67862342 + L1MA9 LINE L1 6031 6310 -2 2046 127 0 0 chr6 114553033 114553308 -67861934 + AluSg SINE Alu 1 275 -35 508 315 73 41 chr6 114553747 114554061 -67861181 + L1MEd LINE L1 45 368 -5751 403 236 49 92 chr6 114554375 114554680 -67860562 + L1M4 LINE L1 2873 3164 -2982 29 0 0 0 chr6 114554746 114554775 -67860467 + AT_rich Low_complexity Low_complexity 1 29 0 889 145 0 0 chr6 114554776 114554900 -67860342 - AluJb SINE Alu -188 124 1 24 32 0 0 chr6 114554909 114554940 -67860302 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr6 114554964 114554989 -67860253 + AT_rich Low_complexity Low_complexity 1 25 0 1160 132 13 0 chr6 114554994 114555153 -67860089 + AluSg/x SINE Alu 138 298 -14 2083 123 24 0 chr6 114556040 114556332 -67858910 + AluSx SINE Alu 1 299 -13 2094 120 0 30 chr6 114556940 114557239 -67858003 + AluSx SINE Alu 3 292 -20 405 58 0 0 chr6 114558032 114558084 -67857158 + (CA)n Simple_repeat Simple_repeat 2 53 0 3060 221 68 38 chr6 114558401 114558635 -67856607 + L1ME3 LINE L1 5266 5492 -670 2051 101 3 49 chr6 114558635 114558942 -67856300 + AluSx SINE Alu 5 297 -15 3060 221 68 38 chr6 114558942 114559576 -67855666 + L1ME3 LINE L1 5492 6160 -2 201 254 0 0 chr6 114559586 114559641 -67855601 + GA-rich Low_complexity Low_complexity 1 55 0 332 297 68 27 chr6 114560681 114560829 -67854413 + L1M LINE L1 5275 5428 -746 293 244 13 0 chr6 114561910 114561988 -67853254 + MER94 DNA DNA 22 100 -34 18961 91 59 29 chr6 114563124 114565751 -67849491 + Charlie3 DNA MER1_type 1 2706 -4 327 238 83 0 chr6 114566598 114566682 -67848560 + MIR SINE MIR 44 134 -74 29 70 0 0 chr6 114567276 114567333 -67847909 + AT_rich Low_complexity Low_complexity 1 57 0 24 32 0 0 chr6 114567380 114567411 -67847831 + AT_rich Low_complexity Low_complexity 1 31 0 354 157 0 0 chr6 114567411 114567462 -67847780 - Alu SINE Alu -249 51 1 898 266 158 3 chr6 114568185 114568520 -67846722 + LTR16C LTR ERVL 103 489 -2 332 333 0 0 chr6 114568590 114568683 -67846559 - MIR SINE MIR -68 140 48 247 374 113 0 chr6 114569303 114569418 -67845824 - MIR SINE MIR -60 148 21 1490 168 6 73 chr6 114570134 114570450 -67844792 + AluJo SINE Alu 1 295 -17 2462 87 0 0 chr6 114570452 114570763 -67844479 + AluY SINE Alu 1 311 0 1900 129 17 17 chr6 114570850 114571145 -67844097 - AluSx SINE Alu -17 295 1 182 255 0 20 chr6 114571362 114571413 -67843829 + MIR SINE MIR 116 165 -97 320 348 0 9 chr6 114572002 114572121 -67843121 - MIR SINE MIR -60 148 34 243 0 0 0 chr6 114572364 114572391 -67842851 + (TA)n Simple_repeat Simple_repeat 1 27 0 1356 227 162 22 chr6 114573211 114573661 -67841581 - LTR33 LTR ERVL -4 517 5 264 253 159 60 chr6 114573731 114573913 -67841329 + L1ME4a LINE L1 5838 6037 -84 1647 149 95 29 chr6 114573921 114574237 -67841005 + MER44D DNA MER2_type 2 608 -1 441 95 0 0 chr6 114574564 114574627 -67840615 + (CTTA)n Simple_repeat Simple_repeat 1 63 0 1771 144 14 25 chr6 114574628 114574912 -67840330 - AluJo SINE Alu -31 281 1 185 250 11 0 chr6 114575199 114575291 -67839951 + (TA)n Simple_repeat Simple_repeat 2 94 0 1701 154 13 30 chr6 114575442 114575741 -67839501 - AluJo SINE Alu -18 294 1 267 274 14 0 chr6 114575876 114575949 -67839293 + L2 LINE L2 3199 3272 0 227 328 190 6 chr6 114577067 114577241 -67838001 + MIR SINE MIR 32 237 -25 471 37 0 275 chr6 114577408 114577461 -67837781 - MADE1 DNA Mariner 0 80 70 1887 163 10 0 chr6 114577461 114577750 -67837492 + AluSx SINE Alu 1 292 -20 471 37 0 275 chr6 114577750 114577805 -67837437 - MADE1 DNA Mariner -10 70 2 223 332 208 0 chr6 114579283 114579413 -67835829 + MIR3 SINE MIR 38 196 -51 742 246 66 31 chr6 114580049 114580277 -67834965 + MIR SINE MIR 13 248 -14 255 61 0 0 chr6 114581717 114581750 -67833492 + (TG)n Simple_repeat Simple_repeat 2 34 0 830 142 0 31 chr6 114581753 114581880 -67833362 - FLAM_C SINE Alu -9 124 2 1562 161 67 15 chr6 114582058 114582325 -67832917 - AluJo SINE Alu -25 287 7 2291 114 0 0 chr6 114582407 114582706 -67832536 - AluSc SINE Alu -10 299 1 202 317 0 12 chr6 114583144 114583226 -67832016 + (CTA)n Simple_repeat Simple_repeat 3 83 0 498 272 133 5 chr6 114583232 114583427 -67831815 - MIR SINE MIR -14 248 29 204 205 0 0 chr6 114583464 114583503 -67831739 - L2 LINE L2 -19 3253 3215 25 0 0 0 chr6 114583505 114583530 -67831712 + AT_rich Low_complexity Low_complexity 1 25 0 846 128 8 0 chr6 114584425 114584542 -67830700 + FLAM_C SINE Alu 1 118 -25 2038 120 9 22 chr6 114584550 114584866 -67830376 - AluSx SINE Alu 0 312 1 30 45 0 0 chr6 114584866 114584910 -67830332 + AT_rich Low_complexity Low_complexity 1 44 0 588 252 113 67 chr6 114585034 114585272 -67829970 - MIR SINE MIR -3 259 11 2202 135 0 6 chr6 114585658 114585970 -67829272 - AluSq SINE Alu -3 310 1 243 0 0 0 chr6 114586064 114586091 -67829151 + (ATG)n Simple_repeat Simple_repeat 3 29 0 625 251 6 44 chr6 114586105 114586288 -67828954 - MIR SINE MIR -12 250 75 2757 20 3 0 chr6 114586745 114587049 -67828193 - AluY SINE Alu -6 305 1 2622 52 3 0 chr6 114587744 114588054 -67827188 + AluY SINE Alu 1 311 0 195 42 0 0 chr6 114588876 114588900 -67826342 + (GGA)n Simple_repeat Simple_repeat 3 26 0 24 0 0 0 chr6 114589342 114589366 -67825876 + GC_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr6 114589422 114589459 -67825783 + GC_rich Low_complexity Low_complexity 1 37 0 2305 90 0 0 chr6 114590251 114590541 -67824701 + AluSg SINE Alu 7 296 -14 2573 168 30 4 chr6 114590548 114591012 -67824230 - L1MB7 LINE L1 -84 6100 5625 1984 194 92 3 chr6 114591015 114591396 -67823846 + MSTC LTR MaLR 1 415 -13 2029 149 21 83 chr6 114591400 114591985 -67823257 - L1MB7 LINE L1 -548 5626 5096 269 325 25 0 chr6 114592244 114592324 -67822918 - MIR SINE MIR -140 122 41 2074 114 65 0 chr6 114592352 114592642 -67822600 + AluSx SINE Alu 1 309 -3 1949 134 0 32 chr6 114592655 114592968 -67822274 + AluJb SINE Alu 1 303 -9 192 225 25 113 chr6 114593015 114593095 -67822147 + L2 LINE L2 3241 3313 0 569 243 193 0 chr6 114593134 114593315 -67821927 + L1MC4 LINE L1 7539 7754 -288 402 263 26 0 chr6 114593811 114593925 -67821317 + L3 LINE CR1 1197 1313 -264 611 248 113 108 chr6 114594395 114594774 -67820468 + LTR16A LTR ERVL 6 386 -71 1843 208 63 8 chr6 114594791 114595190 -67820052 - MLT1C LTR MaLR -9 458 38 4376 125 4 58 chr6 114595212 114595942 -67819300 - LTR8 LTR ERV1 0 691 1 3322 139 35 16 chr6 114596074 114596649 -67818593 - LTR60 LTR ERV1 0 586 1 381 64 0 0 chr6 114596820 114596867 -67818375 + LTR47A LTR ERVL 3 49 -403 2428 83 0 3 chr6 114596867 114597168 -67818074 - AluSc SINE Alu -9 300 1 254 208 26 13 chr6 114597176 114597253 -67817989 - L1ME4a LINE L1 0 6121 6044 456 242 52 20 chr6 114597287 114597440 -67817802 - L1ME4a LINE L1 -331 5790 5633 416 290 141 20 chr6 114597613 114597868 -67817374 + L2 LINE L2 3026 3311 -2 24 0 0 0 chr6 114598441 114598465 -67816777 + AT_rich Low_complexity Low_complexity 1 24 0 2165 125 0 7 chr6 114598981 114599278 -67815964 + AluSx SINE Alu 2 296 -16 2781 70 5 8 chr6 114599391 114599763 -67815479 - L1PA8 LINE L1 0 6172 5802 272 347 135 5 chr6 114599837 114600136 -67815106 - L2 LINE L2 -218 3054 2727 2338 128 89 13 chr6 114600138 114600529 -67814713 + MSTA LTR MaLR 1 421 -7 1097 179 20 10 chr6 114600531 114600753 -67814489 + AluJo SINE Alu 87 310 0 500 315 142 3 chr6 114600763 114601065 -67814177 - L2 LINE L2 -575 2739 2396 1935 118 18 7 chr6 114601494 114601803 -67813439 - AluSg SINE Alu 0 312 1 1551 197 94 90 chr6 114601925 114602288 -67812954 + MER34B LTR ERV1 11 378 -187 2339 100 0 13 chr6 114602288 114602599 -67812643 - AluSg SINE Alu -1 309 3 1551 197 94 90 chr6 114602599 114602788 -67812454 + MER34B LTR ERV1 378 565 0 186 269 60 0 chr6 114602856 114602923 -67812319 + MIR SINE MIR 71 141 -121 656 298 45 44 chr6 114602977 114603349 -67811893 - MLT1J2 LTR MaLR -10 399 21 1287 228 63 91 chr6 114603604 114604086 -67811156 - MER34 LTR ERV1 0 542 77 252 0 44 44 chr6 114604086 114604131 -67811111 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 1287 228 63 91 chr6 114604131 114604206 -67811036 - MER34 LTR ERV1 -465 77 1 27 0 0 0 chr6 114604635 114604662 -67810580 + AT_rich Low_complexity Low_complexity 1 27 0 1682 157 83 46 chr6 114604662 114605178 -67810064 - MER39 LTR ERV1 -95 612 28 4399 118 14 50 chr6 114605178 114605758 -67809484 - LTR8 LTR ERV1 0 691 140 2155 101 0 7 chr6 114605758 114606045 -67809197 + AluSx SINE Alu 26 310 -2 4399 118 14 50 chr6 114606045 114606181 -67809061 - LTR8 LTR ERV1 -551 140 1 1682 157 83 46 chr6 114606181 114606211 -67809031 - MER39 LTR ERV1 -679 28 1 240 209 15 30 chr6 114606374 114606441 -67808801 + L2 LINE L2 3194 3259 -54 2190 113 7 0 chr6 114608376 114608668 -67806574 + AluSx SINE Alu 17 310 -2 590 118 10 0 chr6 114609159 114609261 -67805981 + (GA)n Simple_repeat Simple_repeat 2 104 0 2039 123 20 0 chr6 114609669 114609969 -67805273 - AluSx SINE Alu -6 306 1 276 293 50 0 chr6 114610696 114610795 -67804447 - MIR3 SINE MIR -103 105 2 1082 156 6 0 chr6 114611182 114611342 -67803900 - FRAM SINE Alu -17 159 1 238 333 20 10 chr6 114611446 114611548 -67803694 + L3 LINE CR1 626 728 -849 1045 250 20 111 chr6 114611942 114612433 -67802809 + MER34 LTR ERV1 1 535 -7 610 195 76 8 chr6 114612433 114612551 -67802691 + FLAM_A SINE Alu 1 126 -7 396 0 0 0 chr6 114612551 114612595 -67802647 + (CA)n Simple_repeat Simple_repeat 2 45 0 1045 250 20 111 chr6 114612595 114612698 -67802544 + MER34 LTR ERV1 533 542 0 1637 151 19 26 chr6 114613122 114613387 -67801855 - AluJo SINE Alu -49 263 1 2072 147 108 99 chr6 114613897 114614462 -67800780 + LTR29 LTR ERV1 1 570 -52 746 213 0 0 chr6 114614487 114614647 -67800595 - MER52A LTR ERV1 0 1755 1596 1084 233 31 112 chr6 114614659 114615384 -67799858 - MER52A LTR ERV1 -302 1453 660 1636 143 66 0 chr6 114615386 114615645 -67799597 - AluJb SINE Alu -33 279 4 521 107 0 13 chr6 114615649 114615724 -67799518 + LTR49 LTR ERV1 522 595 0 430 267 33 17 chr6 114616231 114616351 -67798891 + L3 LINE CR1 1039 1160 -417 532 296 34 17 chr6 114616356 114616589 -67798653 + L2 LINE L2 2242 2478 -836 794 241 46 14 chr6 114616647 114616863 -67798379 - MIR SINE MIR -19 243 21 183 306 176 9 chr6 114616907 114617015 -67798227 + L2 LINE L2 3170 3295 -18 2029 208 118 27 chr6 114617070 114617815 -67797427 + MER52A LTR ERV1 140 711 -681 2043 101 38 17 chr6 114617815 114618103 -67797139 - THE1B LTR MaLR 0 364 71 9123 93 21 1 chr6 114618104 114619310 -67795932 - THE1B-int LTR MaLR -350 1230 1 1217 124 52 31 chr6 114619310 114619503 -67795739 - THE1B LTR MaLR 0 364 168 1520 92 5 0 chr6 114619505 114619700 -67795542 - AluSp SINE Alu -17 296 101 3398 130 42 56 chr6 114620302 114620556 -67794686 + MER39B LTR ERV1 1 257 -396 1422 163 137 19 chr6 114620556 114620826 -67794416 + AluJo SINE Alu 1 302 0 3398 130 42 56 chr6 114620826 114621192 -67794050 + MER39B LTR ERV1 257 612 -41 2285 125 72 95 chr6 114621488 114621543 -67793699 - LTR54 LTR ERV1 -2 508 453 2924 90 68 172 chr6 114621543 114621919 -67793323 + MER4B LTR ERV1 1 276 -334 2091 133 3 0 chr6 114621919 114622213 -67793029 - AluSq SINE Alu -18 295 1 2924 90 68 172 chr6 114622213 114622515 -67792727 + MER4B LTR ERV1 276 608 -2 2285 125 72 95 chr6 114622515 114622962 -67792280 - LTR54 LTR ERV1 -57 453 18 324 151 27 41 chr6 114622961 114623034 -67792208 + U13 snRNA snRNA 2 73 -31 * 247 197 0 49 chr6 114623043 114623104 -67792138 + A-rich Low_complexity Low_complexity 4 61 0 407 175 0 0 chr6 114623125 114623240 -67792002 + L1MC2 LINE L1 5192 5267 -879 7667 119 28 15 chr6 114623241 114624408 -67790834 + Tigger1 DNA MER2_type 2 1183 -1235 1153 146 0 11 chr6 114624408 114624586 -67790656 + AluJb SINE Alu 134 309 -3 7571 123 41 11 chr6 114624589 114625797 -67789445 + Tigger1 DNA MER2_type 1174 2418 0 3662 149 40 22 chr6 114625797 114626465 -67788777 + L1MC2 LINE L1 5361 6041 -299 2344 129 77 12 chr6 114626465 114626867 -67788375 + MSTA LTR MaLR 1 428 0 8374 145 5 98 chr6 114626869 114627275 -67787967 + MSTA-int LTR MaLR 3 445 -1135 2433 98 0 0 chr6 114627275 114627582 -67787660 - AluY SINE Alu -4 307 1 8374 145 5 98 chr6 114627582 114628915 -67786327 + MSTA-int LTR MaLR 445 1580 0 2354 145 86 0 chr6 114628915 114629309 -67785933 + MSTA LTR MaLR 1 428 0 1325 149 39 65 chr6 114629309 114629336 -67785906 + L1MC2 LINE L1 6036 6062 -282 2276 139 103 0 chr6 114629336 114629724 -67785518 - MSTA LTR MaLR 0 428 1 1325 149 39 65 chr6 114629724 114630004 -67785238 + L1MC2 LINE L1 6062 6335 -9 2375 80 0 3 chr6 114630116 114630416 -67784826 - AluY SINE Alu -12 299 1 234 150 0 0 chr6 114630805 114630845 -67784397 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr6 114631515 114631536 -67783706 + AT_rich Low_complexity Low_complexity 1 21 0 23 92 0 0 chr6 114632680 114632745 -67782497 + AT_rich Low_complexity Low_complexity 1 65 0 1264 146 13 35 chr6 114633177 114633403 -67781839 - MLT1A1 LTR MaLR 0 365 145 223 37 0 0 chr6 114633404 114633431 -67781811 + (TTTA)n Simple_repeat Simple_repeat 3 160 0 241 225 0 0 chr6 114633431 114633471 -67781771 - AluSq SINE Alu -20 280 241 1040 155 13 0 chr6 114633471 114633626 -67781616 - AluSq SINE Alu -156 157 1 816 144 17 13 chr6 114633628 114633790 -67781452 - MLT1A1 LTR MaLR -208 166 2 516 90 0 0 chr6 114634115 114634182 -67781060 + MSTA LTR MaLR 1 67 -361 270 159 0 0 chr6 114634180 114634224 -67781018 + MSTB LTR MaLR 383 426 0 * 9541 176 17 3 chr6 114634224 114635853 -67779389 + MSTA-int LTR MaLR 1 1651 0 2314 150 61 10 chr6 114635853 114636260 -67778982 + MSTA LTR MaLR 1 428 0 2029 184 44 73 chr6 114636767 114637339 -67777903 - MER34B LTR ERV1 0 565 11 1507 266 96 49 chr6 114637684 114638359 -67776883 + L2 LINE L2 2298 2940 -373 3744 132 34 14 chr6 114638359 114638998 -67776244 + MER39B LTR ERV1 1 652 -1 1507 266 96 49 chr6 114638998 114639066 -67776176 + L2 LINE L2 2940 3003 -310 2040 115 0 14 chr6 114639066 114639380 -67775862 + AluSx SINE Alu 1 310 0 1507 266 96 49 chr6 114639380 114639595 -67775647 + L2 LINE L2 3003 3299 -14 180 111 0 0 chr6 114639595 114639622 -67775620 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 365 0 0 22 chr6 114640458 114640504 -67774738 + (TG)n Simple_repeat Simple_repeat 2 46 0 1997 133 0 23 chr6 114640522 114640822 -67774420 + AluJb SINE Alu 1 293 -19 21 36 0 0 chr6 114640834 114640862 -67774380 + AT_rich Low_complexity Low_complexity 1 28 0 1592 186 7 105 chr6 114640897 114641327 -67773915 + MLT1B LTR MaLR 1 388 -2 24 53 0 0 chr6 114642340 114642378 -67772864 + AT_rich Low_complexity Low_complexity 1 38 0 1654 171 39 0 chr6 114642391 114642672 -67772570 + AluJb SINE Alu 5 296 -16 2240 119 0 0 chr6 114642787 114643106 -67772136 + AluSx SINE Alu 1 312 0 621 285 152 63 chr6 114643182 114643997 -67771245 + L1MC4a LINE L1 5283 6170 -1638 3972 156 60 15 chr6 114644715 114645382 -67769860 - MER72 LTR ERV1 0 722 26 197 352 14 0 chr6 114647035 114647106 -67768136 - MIR SINE MIR -119 89 18 277 313 43 76 chr6 114647109 114647320 -67767922 + L2 LINE L2 2976 3179 -93 2266 90 21 3 chr6 114647332 114647620 -67767622 - AluSc SINE Alu -16 293 1 2242 117 0 7 chr6 114647620 114647929 -67767313 - AluSq SINE Alu -6 307 1 780 132 16 8 chr6 114647958 114648075 -67767167 + FLAM_C SINE Alu 3 123 -179 405 116 0 0 chr6 114648075 114648144 -67767098 + (TA)n Simple_repeat Simple_repeat 2 70 0 780 132 16 8 chr6 114648144 114648155 -67767087 + FLAM_C SINE Alu 123 132 -170 3701 207 102 20 chr6 114648155 114648985 -67766257 + L1M4 LINE L1 3905 4844 -1302 807 181 0 0 chr6 114648985 114649118 -67766124 + FLAM_C SINE Alu 1 133 0 3701 207 102 20 chr6 114649118 114649358 -67765884 + L1M4 LINE L1 4844 5063 -1083 2420 66 3 33 chr6 114649365 114649668 -67765574 + AluY SINE Alu 1 294 -17 1954 207 68 43 chr6 114650073 114650541 -67764701 + MLT2B1 LTR ERVL 1 480 -40 365 120 74 25 chr6 114650557 114650801 -67764441 + (TA)n Simple_repeat Simple_repeat 1 256 0 185 0 0 39 chr6 114651568 114651594 -67763648 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 207 290 32 0 chr6 114652475 114652537 -67762705 - MIR3 SINE MIR -32 176 113 201 234 0 170 chr6 114652654 114652704 -67762538 - MIR SINE MIR -61 147 155 431 283 89 87 chr6 114652704 114653153 -67762089 - MLT1J2 LTR MaLR 0 450 1 201 234 0 170 chr6 114653153 114653196 -67762046 - MIR SINE MIR -52 156 107 2119 169 21 52 chr6 114653286 114653512 -67761730 - MLT2D LTR ERVL 0 414 205 1872 134 7 7 chr6 114653512 114653820 -67761422 - AluJo SINE Alu 0 308 1 2119 169 21 52 chr6 114653820 114654019 -67761223 - MLT2D LTR ERVL -209 205 1 724 185 23 0 chr6 114654303 114654433 -67760809 - AluJb SINE Alu -178 134 2 1827 159 40 3 chr6 114654454 114654755 -67760487 + AluJo SINE Alu 1 312 0 235 196 54 0 chr6 114654755 114654811 -67760431 + GA-rich Low_complexity Low_complexity 4 62 0 207 0 0 0 chr6 114655329 114655352 -67759890 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1103 183 139 52 chr6 114655369 114655476 -67759766 - AluJb SINE Alu -38 274 178 2500 71 0 0 chr6 114655476 114655772 -67759470 - AluSq SINE Alu -16 297 2 1103 183 139 52 chr6 114655772 114655916 -67759326 - AluJb SINE Alu -134 178 1 1773 176 6 6 chr6 114655948 114656260 -67758982 + AluJo SINE Alu 1 312 0 205 268 87 55 chr6 114656421 114656548 -67758694 - L3 LINE CR1 -128 1449 1319 238 271 139 32 chr6 114656758 114657009 -67758233 - L1MC4a LINE L1 -1639 6169 5892 1324 287 64 14 chr6 114657021 114657520 -67757722 - L1MC4a LINE L1 -1994 5814 5291 1986 170 98 33 chr6 114657878 114658338 -67756904 + LTR2B LTR ERV1 1 490 0 1021 221 14 9 chr6 114658372 114658594 -67756648 + MER58A DNA MER1_type 1 223 -1 312 190 22 44 chr6 114658599 114658736 -67756506 + GA-rich Low_complexity Low_complexity 6 139 0 186 239 0 0 chr6 114659784 114659830 -67755412 - MIR SINE MIR -112 150 105 442 240 164 34 chr6 114659850 114660229 -67755013 - L1MC4a LINE L1 -1635 6173 5746 1652 172 50 7 chr6 114660230 114660509 -67754733 - AluJo SINE Alu -16 296 6 378 276 71 16 chr6 114661499 114661626 -67753616 + L3b LINE CR1 1421 1554 -29 1986 149 3 0 chr6 114662016 114662324 -67752918 + AluSx SINE Alu 1 309 -3 1027 277 89 35 chr6 114663107 114663501 -67751741 + LTR33 LTR ERVL 44 458 -63 204 67 0 0 chr6 114663568 114663598 -67751644 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 37 23 0 0 chr6 114663742 114663786 -67751456 + AT_rich Low_complexity Low_complexity 1 44 0 2178 113 0 3 chr6 114665508 114665800 -67749442 + AluSx SINE Alu 1 291 -21 1449 95 5 0 chr6 114666174 114666363 -67748879 - AluSp SINE Alu -5 308 119 641 168 88 8 chr6 114666565 114666690 -67748552 + AluSg/x SINE Alu 173 307 -5 2465 84 0 7 chr6 114666788 114667097 -67748145 + AluSq SINE Alu 3 309 -4 2364 87 0 7 chr6 114667363 114667661 -67747581 - AluSc SINE Alu -13 296 1 428 217 197 15 chr6 114668090 114668288 -67746954 - MIR SINE MIR -3 259 26 2030 110 3 73 chr6 114668433 114668760 -67746482 - AluSq SINE Alu -9 304 1 2209 103 7 0 chr6 114673279 114673579 -67741663 - AluSx SINE Alu -10 302 1 28 29 0 0 chr6 114674343 114674378 -67740864 + AT_rich Low_complexity Low_complexity 1 35 0 971 140 0 0 chr6 114674389 114674532 -67740710 - FLAM_C SINE Alu 0 143 1 433 183 0 0 chr6 114674580 114674662 -67740580 - AluS SINE Alu -1 308 227 201 333 91 20 chr6 114674662 114674761 -67740481 - L2 LINE L2 -285 3028 2923 619 164 64 0 chr6 114674837 114674947 -67740295 - FLAM_C SINE Alu -16 117 1 2271 106 3 0 chr6 114675099 114675401 -67739841 - AluSp SINE Alu -10 303 1 352 77 31 0 chr6 114675487 114675552 -67739690 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 9916 185 68 29 chr6 114675554 114675790 -67739452 - ERVL LTR ERVL -321 5443 5218 1830 138 60 7 chr6 114675790 114676073 -67739169 - AluSx SINE Alu -14 298 1 9916 185 68 29 chr6 114676073 114676234 -67739008 - ERVL LTR ERVL -546 5218 5065 2297 104 3 0 chr6 114676234 114676532 -67738710 - AluSp SINE Alu -14 299 1 9916 185 68 29 chr6 114676532 114678222 -67737020 - ERVL LTR ERVL -699 5065 3274 2116 140 0 0 chr6 114678297 114678597 -67736645 + AluSq SINE Alu 1 300 -13 3256 149 0 6 chr6 114679649 114680173 -67735069 + L1PA16 LINE L1 5646 6166 0 764 250 62 13 chr6 114680383 114680607 -67734635 + MIR SINE MIR 20 254 -8 234 261 182 0 chr6 114680651 114680739 -67734503 + L2 LINE L2 3153 3256 -16 406 147 9 264 chr6 114680943 114680987 -67734255 - MER5B DNA MER1_type 0 178 125 1738 136 34 31 chr6 114680987 114681281 -67733961 - AluJb SINE Alu -7 305 11 406 147 9 264 chr6 114681281 114681301 -67733941 - MER5B DNA MER1_type -53 125 102 2301 93 13 3 chr6 114681301 114681602 -67733640 - AluY SINE Alu -7 304 1 406 147 9 264 chr6 114681602 114681717 -67733525 - MER5B DNA MER1_type -76 102 -41 1346 45 4 146 chr6 114681717 114681876 -67733366 - L1MA5 LINE L1 -8 6292 6112 1795 189 0 10 chr6 114681876 114682189 -67733053 + AluJb SINE Alu 1 310 -2 1346 45 4 146 chr6 114682189 114682223 -67733019 - L1MA5 LINE L1 -188 6112 6138 1842 181 51 0 chr6 114682223 114682554 -67732688 - MER7A DNA MER2_type 0 346 1 1346 45 4 146 chr6 114682554 114682605 -67732637 - L1MA5 LINE L1 -161 6139 6082 406 147 9 264 chr6 114682605 114682654 -67732588 - MER5B DNA MER1_type -218 4294967256 7 2074 144 0 3 chr6 114683228 114683534 -67731708 - AluSx SINE Alu -7 305 1 460 270 40 46 chr6 114684636 114684788 -67730454 - MIR SINE MIR -27 235 85 864 163 0 0 chr6 114685047 114685182 -67730060 + AluJb SINE Alu 1 135 -177 2100 73 0 4 chr6 114685199 114685460 -67729782 - AluY SINE Alu -16 295 36 305 284 0 0 chr6 114685461 114685542 -67729700 - L1ME LINE L1 -507 5614 5534 21 36 0 0 chr6 114685627 114685655 -67729587 + AT_rich Low_complexity Low_complexity 1 28 0 1874 141 29 0 chr6 114685797 114686074 -67729168 - AluJb SINE Alu -23 289 5 578 280 81 31 chr6 114686295 114686556 -67728686 + LTR33 LTR ERVL 11 284 -237 22 0 0 0 chr6 114686795 114686817 -67728425 + AT_rich Low_complexity Low_complexity 1 22 0 1175 128 0 0 chr6 114686817 114686981 -67728261 - AluSg SINE Alu -22 290 127 308 208 10 73 chr6 114687003 114687099 -67728143 - L1MC4 LINE L1 -1339 6703 6614 222 121 35 17 chr6 114687109 114687167 -67728075 + (TA)n Simple_repeat Simple_repeat 2 60 0 1016 77 23 8 chr6 114687167 114687297 -67727945 - AluSg SINE Alu -178 132 1 198 0 0 0 chr6 114687513 114687535 -67727707 + (CCAA)n Simple_repeat Simple_repeat 3 24 0 2116 102 46 0 chr6 114687715 114687999 -67727243 + AluY SINE Alu 1 297 -14 361 302 40 60 chr6 114688055 114688303 -67726939 - L1ME3A LINE L1 -340 5830 5588 1794 138 17 34 chr6 114688565 114688861 -67726381 + AluJo SINE Alu 1 291 -21 2339 92 0 10 chr6 114689296 114689599 -67725643 - AluSx SINE Alu -12 300 1 1591 132 53 95 chr6 114690438 114690483 -67724759 - L1MB3 LINE L1 -2 6181 6136 2383 102 0 0 chr6 114690483 114690777 -67724465 - AluSx SINE Alu -18 294 1 2181 103 7 13 chr6 114690787 114691088 -67724154 - AluSg SINE Alu -11 299 1 2240 113 3 0 chr6 114691088 114691389 -67723853 - AluSq SINE Alu -11 302 1 2109 125 10 3 chr6 114691388 114691685 -67723557 - AluSp SINE Alu -14 299 1 1591 132 53 95 chr6 114691685 114692006 -67723236 - L1MB3 LINE L1 -350 5833 5819 2255 61 17 20 chr6 114692006 114692299 -67722943 - AluSq SINE Alu -20 293 2 760 170 68 0 chr6 114692302 114692449 -67722793 - L1MB3 LINE L1 -577 5606 5450 354 272 72 55 chr6 114692497 114692702 -67722540 - L1MC/D LINE L1 -371 5750 5538 1932 150 3 16 chr6 114692702 114693008 -67722234 - AluSx SINE Alu -10 302 1 354 272 72 55 chr6 114693008 114693177 -67722065 - L1MC/D LINE L1 -583 5538 5373 180 0 0 0 chr6 114693487 114693507 -67721735 + (TA)n Simple_repeat Simple_repeat 2 21 0 2092 133 24 0 chr6 114693507 114693801 -67721441 - AluSq SINE Alu -12 301 1 364 305 61 41 chr6 114693804 114693979 -67721263 - L1MC/D LINE L1 -1318 4828 4643 833 211 23 11 chr6 114693979 114694154 -67721088 - MER5B DNA MER1_type 0 178 2 364 305 61 41 chr6 114694154 114694273 -67720969 - L1MC/D LINE L1 -1503 4643 4528 749 147 37 26 chr6 114694324 114694563 -67720679 + MLT1A1 LTR MaLR 1 365 0 2554 60 0 0 chr6 114694994 114695296 -67719946 - AluY SINE Alu -7 304 3 2230 125 3 0 chr6 114695434 114695745 -67719497 - AluSx SINE Alu 0 312 1 1456 272 68 10 chr6 114695799 114696427 -67718815 - L1MC4a LINE L1 -814 5332 5156 2140 96 4 0 chr6 114696465 114696776 -67718466 - AluSc SINE Alu 0 312 1 896 186 47 17 chr6 114696777 114696949 -67718293 - AluJo SINE Alu -14 298 122 345 235 96 0 chr6 114696949 114697085 -67718157 - HAL1 LINE L1 -1193 1314 1166 735 151 0 0 chr6 114697115 114697241 -67718001 + CT-rich Low_complexity Low_complexity 1 126 0 1289 128 0 0 chr6 114697254 114697584 -67717658 - AluSx SINE Alu 0 440 111 676 189 0 0 chr6 114697644 114697755 -67717487 - AluJb SINE Alu -17 295 185 643 139 0 0 chr6 114697754 114697855 -67717387 - AluSq/x SINE Alu -207 106 6 * 407 243 28 40 chr6 114697860 114698037 -67717205 - HAL1 LINE L1 -1386 1121 947 1725 188 0 17 chr6 114698822 114699114 -67716128 - AluJo SINE Alu -25 287 1 21 0 0 0 chr6 114699119 114699140 -67716102 + AT_rich Low_complexity Low_complexity 1 21 0 1108 261 68 75 chr6 114699146 114699762 -67715480 - HAL1 LINE L1 -1570 937 326 1515 199 95 17 chr6 114700088 114700435 -67714807 - MLT1A2 LTR MaLR 0 374 1 449 193 23 0 chr6 114700501 114700589 -67714653 - MIR SINE MIR -118 144 55 2404 88 0 25 chr6 114702482 114702661 -67712581 - AluSg SINE Alu 0 310 141 2215 113 3 3 chr6 114702661 114702963 -67712279 - AluSx SINE Alu -10 302 1 2404 88 0 25 chr6 114702963 114703101 -67712141 - AluSg SINE Alu -169 141 1 354 229 156 8 chr6 114703619 114703741 -67711501 + Charlie7 DNA MER1_type 1 140 -2472 379 260 128 51 chr6 114704005 114704201 -67711041 + Charlie7 DNA MER1_type 308 518 -2094 2347 112 0 0 chr6 114704450 114704754 -67710488 - AluSq SINE Alu -9 304 1 24 67 0 0 chr6 114704806 114704851 -67710391 + AT_rich Low_complexity Low_complexity 1 45 0 1847 182 0 10 chr6 114705258 114705571 -67709671 - AluJo SINE Alu -2 310 1 2373 88 3 0 chr6 114705872 114706169 -67709073 - AluSp SINE Alu -15 298 1 233 301 32 21 chr6 114706289 114706382 -67708860 + L2 LINE L2 3209 3302 -11 280 298 23 15 chr6 114706460 114706591 -67708651 + L1MC4a LINE L1 4206 4337 -1809 293 240 77 143 chr6 114706594 114706718 -67708524 + MLT1C LTR MaLR 3 134 -333 1977 164 0 16 chr6 114706718 114707030 -67708212 - AluJb SINE Alu -4 308 2 293 240 77 143 chr6 114707030 114707192 -67708050 + MLT1C LTR MaLR 134 270 -197 858 146 0 0 chr6 114707197 114707327 -67707915 + AluSq/x SINE Alu 1 130 -183 1104 143 0 0 chr6 114707856 114708010 -67707232 - AluSq SINE Alu -26 287 134 2267 103 3 7 chr6 114708010 114708310 -67706932 - AluSx SINE Alu -11 301 3 672 152 88 8 chr6 114708408 114708533 -67706709 - AluSg/x SINE Alu -5 307 173 2353 76 3 0 chr6 114708857 114709145 -67706097 - AluSg SINE Alu -21 289 1 390 278 112 33 chr6 114709717 114709833 -67705409 + L1MC4a LINE L1 5494 5599 -2209 2175 97 0 0 chr6 114709833 114710100 -67705142 + AluSx SINE Alu 1 267 -45 390 278 112 33 chr6 114710100 114710314 -67704928 + L1MC4a LINE L1 5599 5924 -1884 962 180 22 0 chr6 114710316 114710494 -67704748 + AluJo SINE Alu 122 303 -9 2307 80 3 20 chr6 114711337 114711638 -67703604 - AluSg SINE Alu -14 296 1 744 146 0 51 chr6 114711949 114712086 -67703156 + FLAM_C SINE Alu 1 130 -3 207 0 0 0 chr6 114712103 114712126 -67703116 + (TTG)n Simple_repeat Simple_repeat 2 24 0 499 120 0 0 chr6 114712129 114712204 -67703038 - AluSg/x SINE Alu -35 277 203 248 118 0 0 chr6 114712204 114712238 -67703004 - Alu SINE Alu -51 252 219 421 136 0 0 chr6 114712238 114712304 -67702938 - AluSg/x SINE Alu -44 265 200 306 119 0 0 chr6 114712304 114712346 -67702896 - AluSp/q SINE Alu -51 252 211 2064 92 0 8 chr6 114712346 114712608 -67702634 - AluSq SINE Alu -53 260 1 237 121 0 181 chr6 114712631 114712680 -67702562 - L1ME4a LINE L1 0 6121 6103 1601 149 36 55 chr6 114712680 114712988 -67702254 + AluJo SINE Alu 1 302 -10 237 121 0 181 chr6 114712988 114713054 -67702188 - L1ME4a LINE L1 -18 6103 6027 758 175 0 29 chr6 114713058 114713195 -67702047 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr6 114713200 114713224 -67702018 + AT_rich Low_complexity Low_complexity 1 24 0 1824 149 0 58 chr6 114713359 114713688 -67701554 - AluJb SINE Alu -2 310 1 385 174 0 82 chr6 114714347 114714445 -67700797 + AluJb SINE Alu 211 300 -2 2133 118 7 0 chr6 114714451 114714738 -67700504 + AluSx SINE Alu 1 289 -23 32 26 0 0 chr6 114714738 114714777 -67700465 + AT_rich Low_complexity Low_complexity 1 39 0 288 224 145 0 chr6 114714803 114714879 -67700363 - L1ME LINE L1 -523 5598 5512 406 134 15 0 chr6 114714952 114715019 -67700223 - Alu SINE Alu 0 302 235 22 0 0 0 chr6 114715571 114715593 -67699649 + AT_rich Low_complexity Low_complexity 1 22 0 1806 171 7 3 chr6 114715609 114715918 -67699324 - AluJb SINE Alu -2 310 1 667 181 30 15 chr6 114715950 114716083 -67699159 + AluJ SINE Alu 2 136 -176 2395 87 0 0 chr6 114716106 114716394 -67698848 + AluSc SINE Alu 1 288 -21 2220 108 3 0 chr6 114716422 114716717 -67698525 + AluY SINE Alu 1 296 -15 944 172 0 46 chr6 114716717 114716891 -67698351 + AluJ SINE Alu 134 299 -13 863 215 11 5 chr6 114716899 114717090 -67698152 + L1PA16 LINE L1 5971 6162 -4 2624 68 0 0 chr6 114717090 114717401 -67697841 + AluY SINE Alu 1 311 0 2275 120 3 0 chr6 114717475 114717783 -67697459 + AluSq SINE Alu 1 309 -4 2219 115 0 0 chr6 114718162 114718470 -67696772 + AluSx SINE Alu 1 308 0 557 124 38 124 chr6 114719198 114719253 -67695989 - Charlie5 DNA MER1_type 0 2624 2566 2015 114 0 36 chr6 114719253 114719559 -67695683 + AluSx SINE Alu 1 295 -17 557 124 38 124 chr6 114719559 114719689 -67695553 - Charlie5 DNA MER1_type -58 2566 2455 574 107 24 0 chr6 114719693 114719777 -67695465 + AluSp/q SINE Alu 165 250 -63 1162 191 4 13 chr6 114719777 114720007 -67695235 + AluJb SINE Alu 85 312 0 2039 94 0 88 chr6 114720011 114720340 -67694902 + AluSg SINE Alu 1 300 -10 2139 104 3 7 chr6 114720703 114720991 -67694251 - AluSc SINE Alu -9 300 14 1760 90 8 12 chr6 114721005 114721250 -67693992 - AluSp SINE Alu -15 298 55 422 244 0 52 chr6 114721396 114721511 -67693731 + L2 LINE L2 3162 3270 -2 24 0 0 0 chr6 114722263 114722287 -67692955 + AT_rich Low_complexity Low_complexity 1 24 0 206 305 32 42 chr6 114722612 114722707 -67692535 + L2 LINE L2 3219 3312 -1 1976 150 41 77 chr6 114723208 114723647 -67691595 - MLT1C LTR MaLR -44 423 1 21 89 0 0 chr6 114723886 114723942 -67691300 + AT_rich Low_complexity Low_complexity 1 56 0 843 272 53 4 chr6 114724018 114724261 -67690981 + MIR SINE MIR 5 259 -3 270 202 77 87 chr6 114724242 114724346 -67690896 - L2 LINE L2 -10 3262 3160 * 1933 149 0 7 chr6 114724395 114724683 -67690559 + AluJb SINE Alu 3 288 -24 201 39 0 0 chr6 114724691 114724717 -67690525 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2250 189 70 107 chr6 114725413 114725980 -67689262 - LTR8A LTR ERV1 0 727 193 2328 113 0 3 chr6 114725980 114726289 -67688953 - AluSx SINE Alu -4 308 1 2250 189 70 107 chr6 114726289 114726476 -67688766 - LTR8A LTR ERV1 -534 193 1 297 0 0 0 chr6 114726527 114726560 -67688682 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 98 0 0 chr6 114726560 114726601 -67688641 + (TA)n Simple_repeat Simple_repeat 1 41 0 1907 123 7 43 chr6 114726605 114726769 -67688473 - AluSq SINE Alu -22 291 141 2379 87 0 3 chr6 114726769 114727068 -67688174 - AluY SINE Alu -13 298 1 1907 123 7 43 chr6 114727068 114727205 -67688037 - AluSq SINE Alu -172 141 1 534 180 30 10 chr6 114727229 114727329 -67687913 - AluJo SINE Alu -178 134 33 1567 185 7 11 chr6 114727330 114727606 -67687636 - AluJo SINE Alu -37 275 1 180 274 68 27 chr6 114727644 114727717 -67687525 - MIR SINE MIR -74 188 113 796 242 72 0 chr6 114727788 114727982 -67687260 - MER63A DNA MER1_type -1 209 2 2518 124 5 16 chr6 114729618 114729997 -67685245 - THE1C LTR MaLR 0 375 1 1708 158 7 10 chr6 114731776 114732068 -67683174 - AluJo SINE Alu -1 311 21 1901 170 0 3 chr6 114732236 114732548 -67682694 + AluJo SINE Alu 1 311 -1 213 39 0 0 chr6 114732835 114732861 -67682381 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 5272 150 8 24 chr6 114734472 114735491 -67679751 + L1MC1 LINE L1 5123 6126 -207 2324 85 6 25 chr6 114735491 114735807 -67679435 + AluSg SINE Alu 1 310 0 5272 150 8 24 chr6 114735807 114735952 -67679290 + L1MC1 LINE L1 6126 6272 -61 201 74 0 0 chr6 114736342 114736369 -67678873 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1987 133 0 3 chr6 114736384 114736669 -67678573 - AluJb SINE Alu -24 288 5 925 181 13 106 chr6 114737432 114737669 -67677573 + AluJo SINE Alu 6 220 -92 1993 147 3 7 chr6 114737745 114738051 -67677191 + AluJo SINE Alu 6 310 -2 698 171 0 0 chr6 114738076 114738181 -67677061 + Tigger1 DNA MER2_type 2 106 -2312 443 143 275 0 chr6 114738237 114738328 -67676914 + FLAM_C SINE Alu 3 118 -15 2590 180 106 105 chr6 114738341 114739430 -67675812 - LTR49-int LTR ERV1 -1933 4783 3696 2098 114 0 28 chr6 114739430 114739720 -67675522 + AluSx SINE Alu 2 283 -29 2590 180 106 105 chr6 114739720 114739905 -67675337 - LTR49-int LTR ERV1 -3020 3696 1686 546 204 45 87 chr6 114739920 114740184 -67675058 - LTR49-int LTR ERV1 -6646 1474 1222 1856 138 14 17 chr6 114740186 114740302 -67674940 + AluJb SINE Alu 1 116 -196 216 0 0 0 chr6 114740302 114740326 -67674916 + (CA)n Simple_repeat Simple_repeat 1 24 0 1856 138 14 17 chr6 114740326 114740499 -67674743 + AluJb SINE Alu 116 289 -23 665 179 24 79 chr6 114740516 114740718 -67674524 - LTR49-int LTR ERV1 -282 1504 1358 524 247 6 57 chr6 114740726 114740884 -67674358 - LTR49-int LTR ERV1 -4231 2100 1951 14172 151 16 17 chr6 114740890 114743008 -67672234 + L1M1 LINE L1 2783 4894 -1325 1662 115 0 4 chr6 114743008 114743234 -67672008 + AluSx SINE Alu 1 225 -87 14172 151 16 17 chr6 114743234 114743817 -67671425 + L1M1 LINE L1 4894 5476 -743 361 100 83 0 chr6 114743806 114743866 -67671376 - L1M1 LINE L1 -747 5555 5491 * 731 120 0 0 chr6 114743869 114743977 -67671265 + L1MA2 LINE L1 6197 6304 0 294 342 103 13 chr6 114745112 114745267 -67669975 - MIR3 SINE MIR -6 202 34 2118 108 0 7 chr6 114745695 114746016 -67669226 + AluSx SINE Alu 1 319 0 1915 161 0 7 chr6 114746111 114746409 -67668833 + AluJo SINE Alu 3 298 -14 2047 199 89 18 chr6 114746468 114746926 -67668316 - LTR54 LTR ERV1 0 510 20 2193 119 0 0 chr6 114747601 114747894 -67667348 - AluSx SINE Alu -18 294 2 4326 135 57 7 chr6 114747937 114748624 -67666618 - MER72 LTR ERV1 0 722 2 777 299 102 35 chr6 114748674 114749166 -67666076 + L1MC/D LINE L1 5254 5778 -2030 379 194 89 32 chr6 114749203 114749327 -67665915 + L1MC/D LINE L1 5649 5779 -2029 1922 194 0 22 chr6 114749460 114749831 -67665411 - MLT1A1 LTR MaLR -2 363 1 28 48 0 0 chr6 114749977 114750019 -67665223 + AT_rich Low_complexity Low_complexity 1 42 0 2310 100 3 10 chr6 114750026 114750336 -67664906 + AluSq SINE Alu 1 308 -5 226 203 35 98 chr6 114750397 114750540 -67664702 + HAL1b LINE L1 1187 1320 -28 184 103 0 0 chr6 114750668 114750697 -67664545 + L2 LINE L2 2920 2948 -366 1133 166 217 8 chr6 114750839 114751074 -67664168 - AluJo SINE Alu -18 284 1 552 210 19 6 chr6 114751119 114751281 -67663961 + CT-rich Low_complexity Low_complexity 4 167 0 1540 200 65 33 chr6 114751648 114751889 -67663353 + Charlie5 DNA MER1_type 1 221 -2403 1994 60 0 4 chr6 114751889 114752138 -67663104 - AluY SINE Alu 0 311 64 1540 200 65 33 chr6 114752138 114752399 -67662843 + Charlie5 DNA MER1_type 221 2624 0 632 215 0 0 chr6 114752911 114753041 -67662201 - Charlie1 DNA MER1_type -12 2749 2620 * 861 161 161 34 chr6 114753022 114753146 -67662096 - Charlie1 DNA MER1_type -2519 242 135 2530 70 7 0 chr6 114753146 114753445 -67661797 + AluSx SINE Alu 1 301 -11 861 161 161 34 chr6 114753445 114753525 -67661717 - Charlie1 DNA MER1_type -2626 135 12 1808 167 3 7 chr6 114754259 114754552 -67660690 + AluJb SINE Alu 7 298 -14 508 264 62 0 chr6 114754628 114754772 -67660470 - MIR SINE MIR -47 215 63 2142 113 3 3 chr6 114754994 114755287 -67659955 - AluSx SINE Alu -17 295 3 260 261 63 27 chr6 114755429 114755540 -67659702 + MIR3 SINE MIR 51 165 -43 795 150 0 8 chr6 114755545 114755678 -67659564 - FLAM_C SINE Alu 0 133 2 2252 112 0 0 chr6 114755729 114756024 -67659218 - AluSg SINE Alu -15 295 1 205 171 0 0 chr6 114756698 114756733 -67658509 + MIR SINE MIR 112 146 -62 2903 129 154 34 chr6 114756937 114757489 -67657753 - LTR35 LTR ERV1 0 618 1 440 290 134 14 chr6 114757509 114757726 -67657516 - LTR35-int LTR ERV1 -23 6653 6411 369 176 108 10 chr6 114757905 114758007 -67657235 - LTR35-int LTR ERV1 -277 6054 5943 253 265 15 15 chr6 114757978 114758046 -67657196 - LTR38-int LTR ERV1 -285 4651 4584 * 1720 149 18 23 chr6 114758068 114758421 -67656821 - LTR38-int LTR ERV1 -434 5736 4140 1924 153 21 0 chr6 114758446 114758734 -67656508 - AluJb SINE Alu -18 294 1 1612 204 76 73 chr6 114758735 114759458 -67655784 - LTR38-int LTR ERV1 -1694 3575 2856 2355 95 0 13 chr6 114759458 114759775 -67655467 - AluSq SINE Alu 0 313 1 1612 204 76 73 chr6 114759775 114760140 -67655102 - LTR38-int LTR ERV1 -2413 2856 1844 1758 86 9 0 chr6 114760225 114760446 -67654796 - AluSc SINE Alu -86 223 1 1041 219 15 15 chr6 114760454 114760655 -67654587 - LTR38-int LTR ERV1 -4121 3416 3216 * 6379 120 94 150 chr6 114760654 114762298 -67652944 + pTR5 LTR ERV1 743 2295 -143 3467 190 64 59 chr6 114762311 114763211 -67652031 - LTR38-int LTR ERV1 -3441 2505 1701 18788 193 19 19 chr6 114763211 114763566 -67651676 - L1P LINE L1 -1143 5003 4649 1907 158 0 19 chr6 114763566 114763876 -67651366 - AluJb SINE Alu -8 304 1 18788 193 19 19 chr6 114763876 114765905 -67649337 - L1P LINE L1 -1497 4649 2618 2939 57 3 0 chr6 114765905 114766259 -67648983 + THE1A LTR MaLR 1 355 0 18788 193 19 19 chr6 114766259 114767879 -67647363 - L1P LINE L1 -3528 2618 999 22 35 0 0 chr6 114767924 114767953 -67647289 + AT_rich Low_complexity Low_complexity 1 29 0 754 129 22 22 chr6 114767982 114768121 -67647121 - LTR38-int LTR ERV1 -3260 1620 1482 1425 181 66 54 chr6 114768175 114768796 -67646446 - LTR38-int LTR ERV1 -4449 1497 52 448 83 0 0 chr6 114768796 114768856 -67646386 - LTR38-int LTR ERV1 -848 938 879 200 111 28 0 chr6 114769081 114769117 -67646125 + GA-rich Low_complexity Low_complexity 2 38 0 902 178 57 73 chr6 114769293 114769540 -67645702 - LTR38-int LTR ERV1 -5290 656 414 2379 116 300 23 chr6 114769559 114769628 -67645614 - LTR35 LTR ERV1 0 618 569 216 0 0 0 chr6 114769628 114769652 -67645590 + (GA)n Simple_repeat Simple_repeat 1 24 0 2379 116 300 23 chr6 114769652 114769932 -67645310 - LTR35 LTR ERV1 -49 569 368 1829 153 24 0 chr6 114769932 114770220 -67645022 - AluJo SINE Alu -15 297 3 2379 116 300 23 chr6 114770220 114770353 -67644889 - LTR35 LTR ERV1 -250 368 1 2318 113 3 0 chr6 114771028 114771354 -67643888 - pTR5 LTR ERV1 -2046 392 66 359 204 31 20 chr6 114771354 114771452 -67643790 - LTR30 LTR ERV1 -80 642 544 4271 145 97 45 chr6 114771452 114772401 -67642841 - pTR5 LTR ERV1 -413 2025 741 742 288 5 5 chr6 114772444 114772635 -67642607 + MER117 DNA MER1_type 2 192 -5 437 311 34 7 chr6 114772969 114773117 -67642125 + MIR SINE MIR 31 182 -80 233 298 75 32 chr6 114773997 114774091 -67641151 + MIR SINE MIR 33 130 -78 409 250 0 0 chr6 114774855 114774955 -67640287 - MER5A DNA MER1_type -80 109 10 22 0 0 0 chr6 114775031 114775053 -67640189 + AT_rich Low_complexity Low_complexity 1 22 0 1993 137 10 17 chr6 114775056 114775349 -67639893 + AluJb SINE Alu 2 292 -20 1760 167 79 19 chr6 114776970 114777336 -67637906 - MLT1B LTR MaLR 0 390 3 505 127 13 0 chr6 114777867 114777946 -67637296 - MADE1 DNA Mariner 0 80 1 2165 103 35 0 chr6 114779127 114779417 -67635825 - AluSq SINE Alu -13 300 1 362 238 56 8 chr6 114779982 114780108 -67635134 - MIR SINE MIR -56 206 75 24 32 0 0 chr6 114781155 114781186 -67634056 + AT_rich Low_complexity Low_complexity 1 31 0 2266 96 0 34 chr6 114781248 114781571 -67633671 + AluSq SINE Alu 2 313 0 2322 102 0 0 chr6 114782593 114782888 -67632354 + AluSx SINE Alu 1 295 -17 183 331 96 73 chr6 114783691 114783869 -67631373 + L2 LINE L2 3021 3202 -70 1377 266 60 60 chr6 114784527 114785190 -67630052 - MLT2F LTR ERVL 0 663 1 699 244 70 104 chr6 114785190 114785489 -67629753 - ERVL-F LTR ERVL -8 5756 5468 539 90 0 0 chr6 114785788 114785866 -67629376 + Alu SINE Alu 228 305 -4 656 226 297 8 chr6 114786329 114786464 -67628778 + L1MD2 LINE L1 5978 6073 -286 192 40 0 0 chr6 114786464 114786489 -67628753 + (CA)n Simple_repeat Simple_repeat 2 26 0 656 226 297 8 chr6 114786489 114786592 -67628650 + L1MD2 LINE L1 6073 6285 -74 46 54 0 0 chr6 114786611 114786685 -67628557 + AT_rich Low_complexity Low_complexity 1 74 0 * 390 253 165 44 chr6 114786674 114786856 -67628386 - MIR SINE MIR -7 255 52 267 242 50 40 chr6 114787055 114787154 -67628088 + MIR SINE MIR 96 195 -67 223 250 69 132 chr6 114787851 114787995 -67627247 + MIR SINE MIR 81 215 -47 205 245 41 0 chr6 114789314 114789363 -67625879 + GA-rich Low_complexity Low_complexity 3 53 0 386 287 0 20 chr6 114789493 114789594 -67625648 - MIR SINE MIR -75 187 89 191 337 47 24 chr6 114790433 114790602 -67624640 - L2 LINE L2 -14 3299 3127 1731 138 0 7 chr6 114791280 114791570 -67623672 - AluSx SINE Alu 0 312 33 2138 102 3 3 chr6 114792597 114792921 -67622321 - AluSp SINE Alu 0 324 1 1162 283 205 41 chr6 114793331 114793886 -67621356 - MER115 DNA AcHobo -1 692 47 237 33 0 0 chr6 114793946 114793976 -67621266 + (GA)n Simple_repeat Simple_repeat 1 30 0 368 337 46 29 chr6 114794544 114794719 -67620523 + MIR3 SINE MIR 16 193 -15 24 0 0 0 chr6 114795884 114795908 -67619334 + AT_rich Low_complexity Low_complexity 1 24 0 800 123 0 22 chr6 114795945 114796083 -67619159 + LOR1a-int LTR ERV1 5930 6064 -2056 600 104 0 73 chr6 114796082 114796151 -67619091 + LOR1a-int LTR ERV1 8030 8102 -18 * 2382 102 51 20 chr6 114796151 114796504 -67618738 - THE1B LTR MaLR 0 364 1 11860 92 9 5 chr6 114796504 114798078 -67617164 - THE1B-int LTR MaLR 0 1580 1 2286 105 63 26 chr6 114798078 114798429 -67616813 - THE1B LTR MaLR 0 364 1 600 104 0 73 chr6 114798429 114798453 -67616789 + LOR1a-int LTR ERV1 8099 8118 -2 3704 104 0 2 chr6 114798461 114798959 -67616283 + LOR1a LTR ERV1 1 497 0 2129 129 6 2 chr6 114798960 114799291 -67615951 - L1PA16 LINE L1 -55 6111 5784 948 128 0 0 chr6 114799300 114799433 -67615809 + FLAM_C SINE Alu 1 133 0 573 245 164 13 chr6 114799592 114799751 -67615491 + MER5A DNA MER1_type 4 186 -3 334 304 51 20 chr6 114799753 114799902 -67615340 - MER5A DNA MER1_type -15 164 4 283 317 30 10 chr6 114799902 114800002 -67615240 - MIR3 SINE MIR -46 162 61 1287 168 9 5 chr6 114800008 114800228 -67615014 + AluJb SINE Alu 55 275 -37 192 97 0 0 chr6 114800233 114800264 -67614978 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 351 0 0 0 chr6 114800296 114800335 -67614907 + (CA)n Simple_repeat Simple_repeat 2 40 0 1888 189 30 22 chr6 114800843 114801214 -67614028 + MLT1A2 LTR MaLR 1 374 0 423 0 0 0 chr6 114801287 114801334 -67613908 + (TG)n Simple_repeat Simple_repeat 2 48 0 827 144 0 0 chr6 114801334 114801452 -67613790 - FLAM_C SINE Alu -15 118 1 2242 244 48 53 chr6 114801567 114801586 -67613656 - MER20B DNA MER1_type -6 777 759 2131 126 0 0 chr6 114801586 114801895 -67613347 - AluSx SINE Alu -3 309 1 2242 244 48 53 chr6 114801895 114802075 -67613167 - MER20B DNA MER1_type -24 759 580 1798 85 4 0 chr6 114802075 114802310 -67612932 + AluSp SINE Alu 65 300 -13 2242 244 48 53 chr6 114802310 114802607 -67612635 - MER20B DNA MER1_type -203 580 283 2103 117 3 10 chr6 114802607 114802915 -67612327 + AluSx SINE Alu 1 306 -6 2242 244 48 53 chr6 114802915 114803190 -67612052 - MER20B DNA MER1_type -500 283 8 307 130 0 0 chr6 114803281 114803327 -67611915 - MER5A DNA MER1_type -87 102 57 643 322 42 55 chr6 114805868 114806362 -67608880 + MLT1K LTR MaLR 86 573 -15 711 304 60 65 chr6 114806640 114807103 -67608139 + L1ME LINE L1 6 466 -5604 763 284 43 73 chr6 114807278 114807318 -67607924 + L1ME LINE L1 517 557 -5513 859 222 39 10 chr6 114807318 114807521 -67607721 - MER3 DNA MER1_type 0 209 1 763 284 43 73 chr6 114807521 114807960 -67607282 + L1ME LINE L1 557 871 -5199 2043 125 3 0 chr6 114807960 114808263 -67606979 + AluSx SINE Alu 1 304 -8 763 284 43 73 chr6 114808263 114808476 -67606766 + L1ME LINE L1 871 1089 -4981 1970 142 6 6 chr6 114808479 114808790 -67606452 + AluJb SINE Alu 1 311 -1 1506 167 0 60 chr6 114810485 114810808 -67604434 - AluJo SINE Alu 0 305 1 2247 336 121 21 chr6 114811811 114813642 -67601600 + L2 LINE L2 283 2296 -1018 581 291 129 17 chr6 114813693 114813934 -67601308 + LTR33 LTR ERVL 1 268 -253 317 254 97 22 chr6 114813952 114814086 -67601156 + LTR33 LTR ERVL 378 521 0 4587 165 81 30 chr6 114814292 114815178 -67600064 - MER21A LTR ERV1 0 931 1 1503 221 85 29 chr6 114815209 114815277 -67599965 - MSTD LTR MaLR 0 396 333 2411 66 0 3 chr6 114815277 114815582 -67599660 + AluY SINE Alu 1 304 -7 1503 221 85 29 chr6 114815582 114815888 -67599354 - MSTD LTR MaLR -63 333 1 299 337 58 29 chr6 114816305 114816548 -67598694 + ERVL LTR ERVL 862 1111 -4653 1887 147 10 0 chr6 114816704 114817003 -67598239 - AluJo SINE Alu -10 302 1 419 248 119 0 chr6 114817006 114817107 -67598135 + ERVL LTR ERVL 2157 2269 -3495 339 146 0 0 chr6 114817721 114817776 -67597466 - L1MD2 LINE L1 -10 6349 6295 364 234 122 65 chr6 114817787 114817894 -67597348 + FLAM_A SINE Alu 10 122 -11 3426 164 44 49 chr6 114817897 114818265 -67596977 - L1MD2 LINE L1 -64 6295 5930 2016 138 0 0 chr6 114818265 114818562 -67596680 + AluSx SINE Alu 1 297 -15 3426 164 44 49 chr6 114818562 114818893 -67596349 - L1MD2 LINE L1 -429 5930 5599 283 319 31 59 chr6 114818893 114818973 -67596269 + L1ME LINE L1 5509 5590 -531 1222 191 38 57 chr6 114818973 114819288 -67595954 + AluJb SINE Alu 1 309 -3 283 319 31 59 chr6 114819288 114819461 -67595781 + L1ME LINE L1 5590 5755 -366 35 0 0 0 chr6 114819479 114819514 -67595728 + AT_rich Low_complexity Low_complexity 1 35 0 1621 121 57 19 chr6 114819563 114819828 -67595414 + AluSx SINE Alu 1 275 -37 255 133 0 0 chr6 114819834 114819879 -67595363 + (GA)n Simple_repeat Simple_repeat 2 46 0 533 319 37 0 chr6 114821356 114821519 -67593723 - MIR3 SINE MIR -24 184 16 1507 158 10 50 chr6 114821959 114822136 -67593106 - AluJb SINE Alu 0 312 150 1994 75 29 59 chr6 114822136 114822442 -67592800 - AluSp SINE Alu -16 297 1 1507 158 10 50 chr6 114822442 114822567 -67592675 - AluJb SINE Alu -162 150 22 2099 93 0 35 chr6 114822812 114823124 -67592118 + AluSc SINE Alu 1 301 -8 233 250 70 47 chr6 114823649 114823735 -67591507 + LTR67 LTR ERVL 418 509 -48 453 84 0 158 chr6 114823735 114823830 -67591412 - MADE1 DNA Mariner 0 80 1 233 250 70 47 chr6 114823830 114823871 -67591371 + LTR67 LTR ERVL 509 548 -9 2386 226 88 20 chr6 114824223 114824881 -67590361 + L1ME3 LINE L1 5459 6161 -1 241 273 180 8 chr6 114827699 114827827 -67587415 + MIR3 SINE MIR 52 201 -7 252 246 0 33 chr6 114828452 114828513 -67586729 - L2 LINE L2 0 3313 3255 1323 186 24 4 chr6 114828561 114828813 -67586429 - L1ME1 LINE L1 -5 6161 5905 1214 325 72 37 chr6 114828926 114829683 -67585559 - L2 LINE L2 -235 3037 2255 292 113 75 0 chr6 114830215 114830268 -67584974 - MLT2B3 LTR ERVL 0 515 459 272 236 8 31 chr6 114830292 114830419 -67584823 + (TA)n Simple_repeat Simple_repeat 2 125 0 1072 204 158 4 chr6 114830419 114830659 -67584583 - MLT2B3 LTR ERVL -277 277 1 189 409 11 0 chr6 114831573 114831661 -67583581 + MIR SINE MIR 40 128 -80 378 378 46 46 chr6 114831955 114832151 -67583091 + L2 LINE L2 3077 3272 0 4055 93 56 2 chr6 114833631 114834181 -67581061 + LTR19B LTR ERV1 1 580 0 219 69 0 0 chr6 114835449 114835478 -67579764 + (CA)n Simple_repeat Simple_repeat 1 29 0 1998 70 44 4 chr6 114835515 114835811 -67579431 - AluY SINE Alu 0 307 1 1337 222 53 14 chr6 114836227 114836511 -67578731 - MER58B DNA MER1_type 0 341 47 587 144 221 0 chr6 114837230 114837334 -67577908 + FLAM_C SINE Alu 1 127 -6 1124 129 11 22 chr6 114837741 114837919 -67577323 - AluSg/x SINE Alu 0 312 137 498 298 106 68 chr6 114838779 114838928 -67576314 + L1M4 LINE L1 4509 4651 -1495 685 170 0 0 chr6 114838928 114839034 -67576208 + U6 snRNA snRNA 1 106 -1 498 298 106 68 chr6 114839034 114839629 -67575613 + L1M4 LINE L1 4651 5281 -865 341 190 0 0 chr6 114839909 114839967 -67575275 - MER69A DNA AcHobo 0 177 120 4630 182 27 15 chr6 114839974 114840778 -67574464 + MER21B LTR ERV1 1 814 -49 576 246 8 0 chr6 114840824 114840946 -67574296 - MER69A DNA AcHobo -52 125 3 415 185 7 148 chr6 114841598 114841733 -67573509 + MER34B LTR ERV1 1 116 -449 1461 198 73 39 chr6 114841879 114842211 -67573031 - MSTD LTR MaLR 0 396 48 952 107 0 0 chr6 114842211 114842333 -67572909 - FLAM_C SINE Alu -11 122 1 1461 198 73 39 chr6 114842333 114842383 -67572859 - MSTD LTR MaLR -348 48 1 707 231 48 36 chr6 114842395 114842646 -67572596 + MER34B LTR ERV1 312 565 0 2269 226 81 68 chr6 114842770 114843138 -67572104 - MER97c DNA MER1_type? 0 1090 728 2317 101 0 7 chr6 114843138 114843445 -67571797 + AluSq SINE Alu 1 305 -8 324 70 0 0 chr6 114843445 114843488 -67571754 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2269 226 81 68 chr6 114843488 114843553 -67571689 - MER97c DNA MER1_type? -362 728 665 1035 164 11 0 chr6 114843553 114843730 -67571512 + L1MB5 LINE L1 5996 6174 0 2269 226 81 68 chr6 114843730 114844368 -67570874 - MER97c DNA MER1_type? -425 665 3 2204 97 6 47 chr6 114844877 114845196 -67570046 - AluSx SINE Alu -6 306 1 299 24 0 24 chr6 114845268 114845309 -67569933 + (TG)n Simple_repeat Simple_repeat 2 41 0 233 250 139 0 chr6 114846094 114846202 -67569040 - L2 LINE L2 -249 3023 2901 343 127 42 0 chr6 114847461 114847532 -67567710 + T-rich Low_complexity Low_complexity 3 76 0 1309 164 138 33 chr6 114847555 114847830 -67567412 - AluJo SINE Alu -4 308 5 237 310 84 13 chr6 114848048 114848203 -67567039 + MLT1L LTR MaLR 41 206 -409 241 170 0 196 chr6 114848203 114848315 -67566927 - L1MC4 LINE L1 -493 7549 7460 5456 127 3 15 chr6 114848423 114849269 -67565973 - L1PA13 LINE L1 -1 6162 5327 183 132 26 0 chr6 114850140 114850178 -67565064 - L2 LINE L2 0 3313 3275 1494 188 28 88 chr6 114850423 114850587 -67564655 + MLT1A2 LTR MaLR 1 173 -201 2304 70 7 20 chr6 114850587 114850911 -67564331 + AluSq SINE Alu 1 313 0 1494 188 28 88 chr6 114850911 114851144 -67564098 + MLT1A2 LTR MaLR 173 374 0 834 285 31 24 chr6 114851481 114851772 -67563470 - L1ME3A LINE L1 -283 5887 5595 1933 136 3 27 chr6 114851830 114852125 -67563117 + AluJo SINE Alu 1 288 -24 270 0 0 0 chr6 114852147 114852177 -67563065 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 3091 15 0 0 chr6 114852177 114852520 -67562722 - L1PA2 LINE L1 -13 6142 5800 655 298 14 18 chr6 114852542 114852817 -67562425 - L1ME3A LINE L1 -1083 5063 4790 584 296 30 6 chr6 114852831 114853000 -67562242 - LTR16C LTR ERVL -216 275 103 * 1049 260 51 96 chr6 114852997 114853412 -67561830 - MLT1E LTR MaLR -197 396 1 1532 235 149 19 chr6 114853500 114854300 -67560942 + L2 LINE L2 2241 3162 -151 630 202 93 0 chr6 114854300 114854429 -67560813 - FLAM_C SINE Alu -1 142 2 518 264 0 61 chr6 114854432 114854595 -67560647 + L2 LINE L2 3161 3313 0 290 253 13 13 chr6 114854666 114854741 -67560501 - MIR3 SINE MIR -119 89 15 2285 94 7 3 chr6 114855152 114855460 -67559782 - AluSx SINE Alu -3 309 1 1307 87 46 18 chr6 114855515 114855733 -67559509 + L1MA8 LINE L1 6061 6284 -7 2054 110 33 0 chr6 114855945 114856241 -67559001 + AluSx SINE Alu 1 305 0 290 253 13 13 chr6 114856887 114856962 -67558280 + MIR3 SINE MIR 15 89 -119 518 264 0 61 chr6 114857033 114857196 -67558046 - L2 LINE L2 0 3313 3161 575 170 132 0 chr6 114857199 114857305 -67557937 + FLAM_C SINE Alu 2 121 -22 252 111 0 0 chr6 114857467 114857512 -67557730 - LTR66 LTR ERVL -172 438 394 360 333 0 0 chr6 114857513 114857693 -67557549 + (TA)n Simple_repeat Simple_repeat 1 180 0 210 262 0 0 chr6 114857702 114857744 -67557498 + (CATA)n Simple_repeat Simple_repeat 2 43 0 229 232 0 101 chr6 114857745 114857844 -67557398 + L1MC4 LINE L1 6615 6703 -1339 * 245 181 0 152 chr6 114857821 114857926 -67557316 - L1MC4 LINE L1 -1340 6702 6614 * 307 241 23 0 chr6 114857844 114857931 -67557311 + L1MC4 LINE L1 6614 6702 -1340 633 148 10 0 chr6 114857931 114858032 -67557210 - AluSg/x SINE Alu -16 294 193 432 0 0 0 chr6 114858071 114858119 -67557123 + (TA)n Simple_repeat Simple_repeat 2 49 0 2335 122 0 0 chr6 114858125 114858437 -67556805 - AluSx SINE Alu 0 312 1 184 143 0 48 chr6 114859560 114859623 -67555619 + (TTTTTA)n Simple_repeat Simple_repeat 5 64 0 445 345 7 0 chr6 114859772 114859911 -67555331 - MIR3 SINE MIR -31 177 38 498 291 90 30 chr6 114860777 114861011 -67554231 + MIR SINE MIR 8 255 -7 315 197 14 0 chr6 114861303 114861374 -67553868 + MER5A DNA MER1_type 35 106 -83 22 0 0 0 chr6 114861450 114861472 -67553770 + GC_rich Low_complexity Low_complexity 1 22 0 233 234 62 0 chr6 114861942 114862006 -67553236 + MIR3 SINE MIR 87 154 -54 486 259 53 42 chr6 114862189 114862335 -67552907 - Charlie8 DNA MER1_type -113 228 78 405 0 0 0 chr6 114862335 114862380 -67552862 + (CA)n Simple_repeat Simple_repeat 2 46 0 486 259 53 42 chr6 114862380 114862422 -67552820 - Charlie8 DNA MER1_type -263 78 38 2247 113 0 7 chr6 114862692 114863001 -67552241 + AluSq SINE Alu 2 308 -5 2312 93 3 13 chr6 114864820 114865122 -67550120 + AluSx SINE Alu 5 303 -9 811 303 104 24 chr6 114865147 114866425 -67548817 + L1M4 LINE L1 2127 3506 -2640 1935 146 4 0 chr6 114866438 114866718 -67548524 + AluJb SINE Alu 1 281 -31 356 222 25 0 chr6 114866719 114866800 -67548442 + GA-rich Low_complexity Low_complexity 4 86 0 340 311 59 9 chr6 114866800 114867019 -67548223 + L1M4 LINE L1 3523 3752 -2394 2481 209 111 142 chr6 114867023 114867942 -67547300 + HAL1 LINE L1 2 948 -1559 576 181 9 9 chr6 114867942 114868047 -67547195 - FLAM_C SINE Alu -36 107 3 2481 209 111 142 chr6 114868047 114868240 -67547002 + HAL1 LINE L1 948 1146 -1361 2275 105 0 0 chr6 114868240 114868525 -67546717 + AluSx SINE Alu 10 294 -18 540 179 185 43 chr6 114868526 114868594 -67546648 + MER53 DNA DNA 5 62 -127 2384 86 0 0 chr6 114868594 114868912 -67546330 + AluY SINE Alu 1 311 0 540 179 185 43 chr6 114868912 114869005 -67546237 + MER53 DNA DNA 62 189 0 2481 209 111 142 chr6 114869005 114869342 -67545900 + HAL1 LINE L1 1145 1509 -998 1072 112 7 0 chr6 114869402 114869545 -67545697 + FRAM SINE Alu 11 154 -22 22 0 0 0 chr6 114869581 114869603 -67545639 + AT_rich Low_complexity Low_complexity 1 22 0 4829 85 6 1 chr6 114869656 114870318 -67544924 - L1P LINE L1 -1275 4871 4207 6839 58 7 35 chr6 114870318 114871367 -67543875 + L1PA8 LINE L1 5190 6172 0 2866 142 44 11 chr6 114872243 114872721 -67542521 + LOR1a LTR ERV1 3 496 -1 941 181 44 6 chr6 114872800 114872982 -67542260 - MER5A DNA MER1_type 0 189 1 2099 98 14 4 chr6 114873117 114873424 -67541818 - AluSx SINE Alu 0 312 3 197 206 274 0 chr6 114873532 114873605 -67541637 - MIR SINE MIR 0 262 170 1374 196 89 53 chr6 114873681 114874074 -67541168 - MER39 LTR ERV1 0 707 301 482 270 108 31 chr6 114874169 114874428 -67540814 + L2 LINE L2 2950 3228 -85 348 224 272 0 chr6 114875822 114875947 -67539295 + MER103 DNA DNA 4 162 -4 371 255 20 0 chr6 114876283 114876381 -67538861 + MER112 DNA MER1_type 159 258 -2 1885 170 0 3 chr6 114876417 114876711 -67538531 + AluJo SINE Alu 1 293 -19 1112 203 100 63 chr6 114877075 114877455 -67537787 - MER39 LTR ERV1 -2 705 312 328 214 48 48 chr6 114877508 114877611 -67537631 - LTR48B LTR ERV1 -541 103 1 300 219 59 34 chr6 114878569 114878657 -67536585 + MIR SINE MIR 59 143 -119 2347 95 3 0 chr6 114878657 114878951 -67536291 + AluSx SINE Alu 1 295 -17 2091 106 32 3 chr6 114878953 114879237 -67536005 + AluSp SINE Alu 1 292 -21 300 219 59 34 chr6 114879237 114879248 -67535994 + MIR SINE MIR 143 152 -110 25 0 0 0 chr6 114879248 114879273 -67535969 + AT_rich Low_complexity Low_complexity 1 25 0 300 219 59 34 chr6 114879273 114879392 -67535850 + MIR SINE MIR 152 256 -6 768 185 116 21 chr6 114879529 114879718 -67535524 + MER20 DNA MER1_type 1 207 -12 780 266 31 35 chr6 114879815 114880071 -67535171 + LTR8 LTR ERV1 1 255 -436 207 261 162 18 chr6 114880650 114880761 -67534481 + MIR SINE MIR 20 146 -62 2349 104 0 0 chr6 114881341 114881649 -67533593 - AluSg SINE Alu -2 308 1 349 197 0 0 chr6 114881834 114881900 -67533342 + MIR SINE MIR 89 154 -108 758 250 175 64 chr6 114882132 114882607 -67532635 - MLT1G1 LTR MaLR 0 595 27 396 0 0 0 chr6 114884620 114884664 -67530578 + (TG)n Simple_repeat Simple_repeat 1 44 0 1457 185 17 27 chr6 114884753 114885051 -67530191 - MLT1B LTR MaLR 0 390 96 897 127 0 0 chr6 114885070 114885188 -67530054 - AluJb SINE Alu -194 118 1 2403 77 0 3 chr6 114886943 114887242 -67528000 + AluY SINE Alu 1 298 -13 2222 107 10 3 chr6 114887446 114887756 -67527486 + AluSp SINE Alu 1 312 -1 1189 132 0 62 chr6 114887694 114887937 -67527305 + AluSq SINE Alu 85 312 -1 23 0 0 0 chr6 114888001 114888024 -67527218 + AT_rich Low_complexity Low_complexity 1 23 0 1428 136 0 36 chr6 114888407 114888628 -67526614 + AluJb SINE Alu 77 289 -23 2269 81 0 3 chr6 114888660 114888969 -67526273 + AluY SINE Alu 1 308 -3 21 0 0 0 chr6 114889109 114889130 -67526112 + AT_rich Low_complexity Low_complexity 1 21 0 341 283 43 131 chr6 114889314 114889506 -67525736 + HAL1 LINE L1 1 154 -2353 1048 169 123 0 chr6 114889506 114889701 -67525541 - MER20 DNA MER1_type 0 219 1 341 283 43 131 chr6 114889701 114889837 -67525405 + HAL1 LINE L1 154 300 -2207 990 283 77 54 chr6 114889901 114890381 -67524861 + HAL1 LINE L1 443 933 -1574 2402 261 76 17 chr6 114890487 114891160 -67524082 + L1MC4 LINE L1 6877 7608 -434 2170 102 13 3 chr6 114891160 114891465 -67523777 + AluSp SINE Alu 1 308 -5 2402 261 76 17 chr6 114891465 114891603 -67523639 + L1MC4 LINE L1 7608 7736 -306 4483 252 110 56 chr6 114891603 114891825 -67523417 - HERV16 LTR ERVL -2510 2486 2277 222 37 0 0 chr6 114891825 114891852 -67523390 + (TG)n Simple_repeat Simple_repeat 2 28 0 4483 252 110 56 chr6 114891852 114892086 -67523156 - HERV16 LTR ERVL -2719 2277 2057 668 224 0 92 chr6 114892086 114892282 -67522960 - MER45A DNA AcHobo 0 178 1 4483 252 110 56 chr6 114892282 114892502 -67522740 - HERV16 LTR ERVL -2939 2057 1850 1976 114 14 4 chr6 114892502 114892813 -67522429 - AluSx SINE Alu 0 314 1 4483 252 110 56 chr6 114892813 114893225 -67522017 - HERV16 LTR ERVL -3146 1850 1461 2497 41 0 0 chr6 114893225 114893520 -67521722 - AluY SINE Alu -16 295 1 4483 252 110 56 chr6 114893520 114894592 -67520650 - HERV16 LTR ERVL -3535 1461 142 2133 97 0 26 chr6 114894592 114894900 -67520342 - AluSx SINE Alu -9 303 4 4483 252 110 56 chr6 114894900 114895049 -67520193 - HERV16 LTR ERVL -4854 142 2 412 224 32 40 chr6 114895051 114895176 -67520066 - LTR16A LTR ERVL 0 450 327 1705 131 12 76 chr6 114895357 114895686 -67519556 + AluJo SINE Alu 1 308 -4 285 277 59 34 chr6 114895692 114895811 -67519431 - MIR SINE MIR -39 223 102 1988 108 0 0 chr6 114895939 114896216 -67519026 + AluSc SINE Alu 29 305 -4 3617 123 15 10 chr6 114896548 114897132 -67518110 - L1MA4A LINE L1 -11 6292 5706 23 33 0 0 chr6 114897589 114897619 -67517623 + AT_rich Low_complexity Low_complexity 1 30 0 344 220 102 17 chr6 114897864 114897985 -67517257 - L1M4 LINE L1 -372 5812 5679 254 302 29 7 chr6 114897967 114898106 -67517136 - L1P LINE L1 -1115 5031 4890 * 2034 116 3 0 chr6 114898125 114898410 -67516832 - AluSx SINE Alu -16 296 11 271 214 14 0 chr6 114898665 114898735 -67516507 + Charlie5 DNA MER1_type 32 102 -2510 236 231 0 46 chr6 114898709 114898774 -67516468 - MER3 DNA MER1_type -100 109 48 * 303 328 26 11 chr6 114898786 114898975 -67516267 - L1 LINE L1 -1801 4345 4154 647 202 93 0 chr6 114899527 114899656 -67515586 + FLAM_C SINE Alu 2 142 -1 867 172 0 81 chr6 114899656 114899842 -67515400 + AluSg/x SINE Alu 104 274 -38 2061 154 21 32 chr6 114900410 114900786 -67514456 - LOR1b LTR ERV1 -1 460 89 513 254 9 0 chr6 114900889 114900999 -67514243 - MER3 DNA MER1_type -98 111 1 1892 158 0 3 chr6 114901014 114901324 -67513918 - AluJb SINE Alu -3 309 1 599 173 16 55 chr6 114901342 114901469 -67513773 - FLAM_C SINE Alu -10 133 12 372 318 129 66 chr6 114901511 114901829 -67513413 - L2 LINE L2 -31 3241 2904 2341 76 3 0 chr6 114901898 114902201 -67513041 - AluSp SINE Alu -9 304 1 263 267 12 35 chr6 114902305 114902391 -67512851 + MIR SINE MIR 173 256 -6 1333 190 142 0 chr6 114902768 114903021 -67512221 - AluJo SINE Alu -13 289 1 374 196 134 0 chr6 114903160 114903272 -67511970 - MER115 DNA AcHobo -30 663 537 1905 123 7 20 chr6 114903272 114903573 -67511669 + AluSx SINE Alu 1 297 -15 1674 172 0 7 chr6 114903648 114903944 -67511298 - AluJo SINE Alu -18 294 1 1811 132 0 0 chr6 114903970 114904236 -67511006 + AluSx SINE Alu 1 266 -46 180 0 0 0 chr6 114904246 114904266 -67510976 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 722 205 56 19 chr6 114904270 114904415 -67510827 - Zaphod DNA AcHobo -184 3847 3690 2322 71 0 3 chr6 114904415 114904711 -67510531 - AluSq SINE Alu -18 295 1 722 205 56 19 chr6 114904711 114904780 -67510462 - Zaphod DNA AcHobo -341 3690 3625 2236 104 0 0 chr6 114904809 114905117 -67510125 + AluSg SINE Alu 2 309 -1 581 200 45 0 chr6 114905159 114905269 -67509973 - AluSg/x SINE Alu 0 309 195 29 60 0 0 chr6 114905282 114905332 -67509910 + AT_rich Low_complexity Low_complexity 1 50 0 1469 114 5 0 chr6 114905432 114905643 -67509599 - AluSp SINE Alu -101 212 1 274 250 31 31 chr6 114905643 114905739 -67509503 + LTR32 LTR ERVL 376 471 0 506 320 63 74 chr6 114905762 114906046 -67509196 + L2 LINE L2 2974 3254 -18 1204 167 150 67 chr6 114907147 114907472 -67507770 - LTR48 LTR ERV1 -2 785 416 2283 82 0 13 chr6 114907472 114907775 -67507467 - AluSx SINE Alu -5 307 9 1204 167 150 67 chr6 114907775 114907868 -67507374 - LTR48 LTR ERV1 -371 416 332 2020 115 3 0 chr6 114907870 114908166 -67507076 + AluSx SINE Alu 10 306 -6 1234 174 85 53 chr6 114908174 114908290 -67506952 + AluJb SINE Alu 1 112 -190 261 57 0 0 chr6 114908290 114908325 -67506917 + (CA)n Simple_repeat Simple_repeat 2 36 0 1234 174 85 53 chr6 114908325 114908489 -67506753 + AluJb SINE Alu 112 290 -12 2052 95 21 0 chr6 114908497 114908780 -67506462 + AluSg SINE Alu 1 289 -21 24 53 0 0 chr6 114908782 114908820 -67506422 + AT_rich Low_complexity Low_complexity 1 38 0 1367 195 92 7 chr6 114908820 114909092 -67506150 - LTR48 LTR ERV1 -428 359 65 2129 100 3 0 chr6 114909376 114909665 -67505577 + AluSc SINE Alu 1 290 -19 747 157 17 0 chr6 114909740 114909855 -67505387 + FLAM_C SINE Alu 2 118 -25 216 97 0 0 chr6 114909855 114909886 -67505356 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1888 107 14 24 chr6 114910009 114910299 -67504943 + AluSx SINE Alu 1 287 -25 1433 130 0 5 chr6 114910405 114910621 -67504621 - AluSx SINE Alu -97 215 1 8034 125 59 48 chr6 114910621 114911173 -67504069 + PABL_A-int LTR ERV1 1130 1674 -3341 2224 96 7 0 chr6 114911173 114911475 -67503767 + AluSx SINE Alu 1 304 -8 8034 125 59 48 chr6 114911475 114911672 -67503570 + PABL_A-int LTR ERV1 1674 1867 -3148 2059 139 0 0 chr6 114911672 114911981 -67503261 + AluSx SINE Alu 1 309 -3 8034 125 59 48 chr6 114911981 114912283 -67502959 + PABL_A-int LTR ERV1 1867 2164 -2851 1832 108 63 0 chr6 114912283 114912552 -67502690 + AluSc SINE Alu 3 288 -21 8034 125 59 48 chr6 114912552 114912673 -67502569 + PABL_A-int LTR ERV1 2164 2282 -2733 2295 72 14 0 chr6 114912673 114912966 -67502276 + AluSp SINE Alu 1 297 -16 8034 125 59 48 chr6 114912966 114913727 -67501515 + PABL_A-int LTR ERV1 2282 3033 -1982 2016 112 14 0 chr6 114913727 114914021 -67501221 - AluSp SINE Alu -11 302 5 8034 125 59 48 chr6 114914021 114914277 -67500965 + PABL_A-int LTR ERV1 3033 3894 -1121 1898 109 46 0 chr6 114914277 114914561 -67500681 + AluSp SINE Alu 1 297 -16 1946 114 0 20 chr6 114914570 114914869 -67500373 + AluSx SINE Alu 1 293 -19 402 165 9 139 chr6 114914870 114914985 -67500257 + AluJo/FRAM SINE Alu 134 233 -79 1272 118 25 25 chr6 114915091 114915336 -67499906 + AluSq SINE Alu 69 313 0 1259 173 161 0 chr6 114915346 114915595 -67499647 + AluSx SINE Alu 1 289 -23 276 213 16 27 chr6 114915617 114915703 -67499539 - L1MC/D LINE L1 -370 5751 5668 615 238 83 12 chr6 114915716 114915884 -67499358 - L2 LINE L2 -18 3295 3116 514 185 0 0 chr6 114915947 114916028 -67499214 - FLAM_A SINE Alu -55 87 7 865 229 11 107 chr6 114916029 114916407 -67498835 - L2 LINE L2 -233 3080 2750 2102 97 0 0 chr6 114916407 114916722 -67498520 - AluSg SINE Alu 0 315 1 865 229 11 107 chr6 114916722 114916813 -67498429 - L2 LINE L2 -563 2750 2652 1192 114 6 0 chr6 114916815 114916982 -67498260 + AluSx SINE Alu 2 169 -143 1343 298 165 9 chr6 114916982 114917369 -67497873 - L2 LINE L2 -827 2487 1984 1808 138 3 3 chr6 114917369 114917684 -67497558 + AluSx SINE Alu 1 315 0 1343 298 165 9 chr6 114917684 114917852 -67497390 - L2 LINE L2 -1330 1984 1844 273 145 145 0 chr6 114917852 114917894 -67497348 - MLT2B3 LTR ERVL 0 554 519 308 94 19 0 chr6 114917894 114917947 -67497295 + (TGGA)n Simple_repeat Simple_repeat 2 55 0 273 145 145 0 chr6 114917947 114917973 -67497269 - MLT2B3 LTR ERVL -35 519 476 1252 154 105 4 chr6 114918076 114918187 -67497055 + AluJb SINE Alu 1 99 -213 207 0 0 0 chr6 114918187 114918210 -67497032 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1252 154 105 4 chr6 114918210 114918364 -67496878 + AluJb SINE Alu 99 293 -19 1126 126 11 0 chr6 114918420 114918594 -67496648 + AluSg/x SINE Alu 133 308 -4 1646 52 0 5 chr6 114918601 114918813 -67496429 + AluY SINE Alu 1 211 -100 182 375 80 0 chr6 114919386 114919498 -67495744 - MIR3 SINE MIR -25 183 63 1525 125 50 32 chr6 114919750 114919928 -67495314 - AluSx SINE Alu 0 312 139 2382 41 3 0 chr6 114919928 114920222 -67495020 - AluY SINE Alu -16 295 1 2008 113 21 0 chr6 114920224 114920515 -67494727 - AluSx SINE Alu -11 301 5 1525 125 50 32 chr6 114920515 114920640 -67494602 - AluSx SINE Alu -173 139 1 589 257 28 78 chr6 114920641 114920859 -67494383 + L2 LINE L2 3087 3293 -20 565 193 97 62 chr6 114920863 114921039 -67494203 - L2 LINE L2 -421 2893 2712 2841 171 63 4 chr6 114921097 114921605 -67493637 - MER68 LTR ERV1 -24 538 1 543 194 0 186 chr6 114921605 114921833 -67493409 - L2 LINE L2 -1027 2287 2111 2011 119 0 19 chr6 114921833 114922151 -67493091 + AluSx SINE Alu 1 312 0 543 194 0 186 chr6 114922151 114922180 -67493062 - L2 LINE L2 -1203 2111 2078 1104 114 32 0 chr6 114922182 114922340 -67492902 - AluSq SINE Alu -16 297 135 2165 89 14 0 chr6 114922340 114922632 -67492610 - AluSp SINE Alu -17 296 1 603 193 105 29 chr6 114922632 114922803 -67492439 - L2 LINE L2 -1227 2087 1904 1686 158 4 4 chr6 114922977 114923256 -67491986 + AluSx SINE Alu 9 287 -25 2135 120 0 0 chr6 114923315 114923615 -67491627 + AluSx SINE Alu 1 300 -12 2170 112 0 0 chr6 114923785 114924081 -67491161 + AluSx SINE Alu 1 296 -16 2223 95 3 0 chr6 114924647 114924951 -67490291 + AluSp SINE Alu 2 306 -7 2087 100 0 3 chr6 114924951 114925241 -67490001 + AluSc SINE Alu 1 289 -20 1969 95 24 7 chr6 114925241 114925536 -67489706 + AluSx SINE Alu 7 306 -6 282 314 29 29 chr6 114925657 114925759 -67489483 - L2 LINE L2 -1 3312 3211 2076 131 0 3 chr6 114926208 114926521 -67488721 + AluSx SINE Alu 1 312 0 405 162 101 81 chr6 114926579 114926605 -67488637 + MER39 LTR ERV1 382 406 -301 2035 122 10 13 chr6 114926605 114926916 -67488326 + AluSx SINE Alu 1 310 -2 405 162 101 81 chr6 114926916 114927037 -67488205 + MER39 LTR ERV1 406 532 -175 1806 160 0 19 chr6 114927049 114927367 -67487875 + AluJo SINE Alu 1 312 0 2251 93 0 0 chr6 114927384 114927684 -67487558 - AluY SINE Alu -11 300 1 712 214 0 0 chr6 114927685 114927811 -67487431 - FLAM_A SINE Alu -7 126 1 284 282 0 0 chr6 114927815 114927893 -67487349 - L1M4 LINE L1 -3106 3040 2963 288 98 0 0 chr6 114928680 114928721 -67486521 + MER116 DNA Mariner 2 42 -38 2450 77 0 0 chr6 114928740 114929052 -67486190 - AluSx SINE Alu 0 312 1 1451 154 6 72 chr6 114929052 114929362 -67485880 - AluJb SINE Alu -16 296 6 1836 141 10 3 chr6 114929376 114929675 -67485567 - AluJo SINE Alu -11 301 1 246 128 0 0 chr6 114929850 114929889 -67485353 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2164 109 0 3 chr6 114929957 114930260 -67484982 - AluSx SINE Alu -10 302 1 1833 103 37 4 chr6 114930420 114930691 -67484551 + AluSx SINE Alu 5 284 -28 1051 145 12 6 chr6 114930791 114930963 -67484279 - AluJb SINE Alu -138 174 2 237 65 0 0 chr6 114930978 114931009 -67484233 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 1165 50 22 17 chr6 114931009 114931188 -67484054 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2202 94 0 3 chr6 114931188 114931608 -67483634 - AluSg SINE Alu 0 419 1 403 270 113 22 chr6 114931702 114931887 -67483355 + MLT1I LTR MaLR 68 269 -140 447 335 119 30 chr6 114931966 114932294 -67482948 + L2 LINE L2 2504 2860 -454 1367 205 0 4 chr6 114932295 114932563 -67482679 - AluJo SINE Alu -8 304 38 2270 77 0 7 chr6 114932787 114933085 -67482157 - AluSg SINE Alu -14 296 1 294 330 54 0 chr6 114933180 114933292 -67481950 - MIR3 SINE MIR -43 165 48 2150 108 3 0 chr6 114933292 114933599 -67481643 - AluSx SINE Alu -4 308 1 259 324 142 20 chr6 114933806 114933840 -67481402 + MIR SINE MIR 77 105 -157 2140 132 0 0 chr6 114933840 114934143 -67481099 - AluSq SINE Alu -10 303 1 259 324 142 20 chr6 114934143 114934256 -67480986 + MIR SINE MIR 105 242 -20 557 170 9 0 chr6 114934389 114934501 -67480741 + GA-rich Low_complexity Low_complexity 4 116 0 2253 87 0 7 chr6 114934520 114934829 -67480413 - AluY SINE Alu -4 307 1 1928 157 0 0 chr6 114935045 114935357 -67479885 + AluSx SINE Alu 1 312 0 1307 181 7 29 chr6 114935481 114935762 -67479480 - AluJb SINE Alu -35 277 3 1758 82 13 0 chr6 114935917 114936149 -67479093 - AluSq SINE Alu -78 235 1 862 162 48 0 chr6 114936154 114936321 -67478921 + L1 LINE L1 4575 4749 -1397 1873 145 0 0 chr6 114936321 114936626 -67478616 + AluSx SINE Alu 1 305 0 5842 194 62 51 chr6 114936639 114937083 -67478159 + L1MC1 LINE L1 1809 2247 -4179 2067 126 7 0 chr6 114937083 114937392 -67477850 + AluSq SINE Alu 1 311 -2 5842 194 62 51 chr6 114937392 114938139 -67477103 + L1MC1 LINE L1 2247 2984 -3442 383 138 100 25 chr6 114938139 114938219 -67477023 + LTR8A LTR ERV1 567 652 -75 1940 116 10 3 chr6 114938229 114938521 -67476721 + AluSx SINE Alu 1 294 -18 5842 194 62 51 chr6 114938521 114939454 -67475788 + L1MC1 LINE L1 2992 3913 -2513 2478 46 0 3 chr6 114939454 114939738 -67475504 + AluY SINE Alu 21 303 -8 5842 194 62 51 chr6 114939738 114940342 -67474900 + L1MC1 LINE L1 3913 5607 -819 757 181 30 8 chr6 114940343 114940476 -67474766 + AluJo SINE Alu 1 136 -176 658 169 0 0 chr6 114940476 114940594 -67474648 + L1MC1 LINE L1 5600 5717 -896 2266 85 7 0 chr6 114940595 114940921 -67474321 + AluSp SINE Alu 1 328 0 951 155 14 78 chr6 114940930 114941073 -67474169 + AluJo SINE Alu 105 231 -81 2078 148 0 10 chr6 114941073 114941377 -67473865 - AluJb SINE Alu -11 301 1 951 155 14 78 chr6 114941377 114941452 -67473790 + AluJo SINE Alu 231 309 -3 837 144 0 30 chr6 114941459 114941591 -67473651 + FLAM_C SINE Alu 2 129 -4 5045 149 58 2 chr6 114941612 114942468 -67472774 + L1MC1 LINE L1 5708 6611 -2 668 136 79 183 chr6 114942469 114942583 -67472659 + L1MB7 LINE L1 5814 5938 -246 2022 118 4 4 chr6 114942583 114942863 -67472379 + AluSx SINE Alu 1 280 -32 668 136 79 183 chr6 114942863 114943027 -67472215 + L1MB7 LINE L1 5938 6063 -121 716 181 5 141 chr6 114943045 114943267 -67471975 + AluSg/x SINE Alu 117 311 0 290 182 0 0 chr6 114943269 114943335 -67471907 + L1MB8 LINE L1 6107 6172 -6 2470 89 0 0 chr6 114943338 114943640 -67471602 + AluSp SINE Alu 1 302 -11 2440 94 3 0 chr6 114943762 114944069 -67471173 + AluSp SINE Alu 1 308 -5 870 119 0 0 chr6 114944281 114944399 -67470843 + FLAM_C SINE Alu 1 118 -15 1045 131 36 68 chr6 114945976 114946127 -67469115 + MER33 DNA MER1_type 1 144 -2441 1588 182 17 17 chr6 114946127 114946424 -67468818 - AluJo SINE Alu -15 297 1 1045 131 36 68 chr6 114946424 114946494 -67468748 + MER33 DNA MER1_type 144 215 -109 2073 107 0 80 chr6 114946495 114946822 -67468420 - AluSc SINE Alu -8 301 1 2301 120 0 0 chr6 114947175 114947474 -67467768 + AluSx SINE Alu 1 299 -13 262 269 135 19 chr6 114949105 114949209 -67466033 - MIR SINE MIR -107 155 40 249 204 0 0 chr6 114949901 114949922 -67465320 + A-rich Low_complexity Low_complexity 1 21 -28 2398 87 3 0 chr6 114949922 114950234 -67465008 + AluSp SINE Alu 1 313 0 249 204 0 0 chr6 114950234 114950261 -67464981 + A-rich Low_complexity Low_complexity 20 49 0 2420 52 23 20 chr6 114950261 114950567 -67464675 + AluY SINE Alu 1 307 -4 1160 167 25 0 chr6 114950689 114950893 -67464349 + MER2 DNA MER2_type 2 210 -135 1776 152 32 26 chr6 114950906 114951216 -67464026 - AluJo SINE Alu 0 312 1 2362 94 0 3 chr6 114951342 114951649 -67463593 + AluSc SINE Alu 1 306 -3 1646 188 10 20 chr6 114952855 114953158 -67462084 - AluJo SINE Alu -12 300 1 2459 93 0 0 chr6 114953187 114953489 -67461753 - AluSx SINE Alu -10 302 1 2069 137 10 0 chr6 114953713 114954012 -67461230 - AluSx SINE Alu -10 302 1 2017 126 3 3 chr6 114955071 114955356 -67459886 - AluSx SINE Alu -27 285 1 270 230 50 20 chr6 114955420 114955520 -67459722 + Alu SINE Alu 3 105 -196 336 203 0 0 chr6 114955544 114955603 -67459639 + L2 LINE L2 3255 3313 0 1120 147 0 0 chr6 114956077 114956234 -67459008 - AluSq SINE Alu -23 290 134 2357 97 0 3 chr6 114956234 114956534 -67458708 - AluSg SINE Alu -11 299 1 2355 91 3 16 chr6 114956571 114956879 -67458363 - AluSg SINE Alu -5 305 2 1714 135 0 4 chr6 114956930 114957174 -67458068 - AluSq SINE Alu -70 243 1 2262 94 7 3 chr6 114958000 114958298 -67456944 - AluSq SINE Alu -14 299 1 197 274 0 0 chr6 114958348 114958399 -67456843 + L2 LINE L2 3262 3312 -1 2352 100 0 3 chr6 114958485 114958786 -67456456 - AluSq SINE Alu -13 300 1 632 253 167 14 chr6 114958930 114959151 -67456091 + MIR SINE MIR 8 262 0 875 175 23 6 chr6 114959633 114959804 -67455438 + MER5A DNA MER1_type 16 189 0 605 282 156 8 chr6 114959806 114960203 -67455039 + LTR16A1 LTR ERVL 2 457 0 1088 156 12 0 chr6 114960269 114960442 -67454800 - AluSg/x SINE Alu -4 306 132 2272 113 3 0 chr6 114960443 114960744 -67454498 - AluSx SINE Alu -6 306 5 380 299 97 19 chr6 114960931 114961085 -67454157 + MIR SINE MIR 35 200 -62 397 314 36 7 chr6 114961092 114961232 -67454010 + MIR SINE MIR 112 255 -7 2236 114 3 0 chr6 114961295 114961594 -67453648 - AluSx SINE Alu -12 300 1 232 117 65 0 chr6 114962042 114962119 -67453123 + (TA)n Simple_repeat Simple_repeat 1 82 0 2151 122 17 0 chr6 114962119 114962407 -67452835 - AluSx SINE Alu -19 293 1 21 71 0 0 chr6 114962407 114962449 -67452793 + AT_rich Low_complexity Low_complexity 1 42 0 1558 183 16 0 chr6 114962506 114962757 -67452485 + AluJb SINE Alu 1 255 -57 209 200 0 0 chr6 114964081 114964131 -67451111 + A-rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr6 114964226 114964249 -67450993 + AT_rich Low_complexity Low_complexity 1 23 0 669 210 136 68 chr6 114969598 114969973 -67445269 + L1ME1 LINE L1 5729 6122 -44 418 277 31 0 chr6 114969889 114970019 -67445223 + L1MA10 LINE L1 6194 6327 -7 * 255 247 10 103 chr6 114970249 114970346 -67444896 - MER5A DNA MER1_type 0 189 102 1838 150 7 17 chr6 114970680 114970973 -67444269 + AluJb SINE Alu 1 290 -22 316 225 0 88 chr6 114971167 114971247 -67443995 - L1MC4 LINE L1 -1338 6704 6632 252 208 56 42 chr6 114971456 114971528 -67443714 + L2 LINE L2 3231 3303 -10 1993 135 44 0 chr6 114971592 114971889 -67443353 + AluJb SINE Alu 1 310 -2 362 311 66 20 chr6 114971968 114972109 -67443133 + MIR SINE MIR 105 255 -7 2425 90 3 0 chr6 114972109 114972409 -67442833 + AluSx SINE Alu 1 301 -11 2049 100 61 0 chr6 114972795 114973074 -67442168 + AluY SINE Alu 1 296 -15 679 205 0 0 chr6 114973086 114973226 -67442016 + AluJb SINE Alu 168 307 0 1071 152 0 91 chr6 114974817 114975015 -67440227 - AluSg/x SINE Alu -21 291 112 690 183 0 0 chr6 114975141 114975245 -67439997 - AluJb SINE Alu -207 105 2 816 127 113 47 chr6 114975253 114975403 -67439839 - 7SLRNA srpRNA srpRNA -9 311 152 275 83 0 0 chr6 114975404 114975440 -67439802 + 7SLRNA srpRNA srpRNA 114 149 -171 205 182 68 0 chr6 114975441 114975485 -67439757 - L2 LINE L2 -80 3192 3146 1050 131 13 0 chr6 114976441 114976594 -67438648 - AluY SINE Alu -21 290 136 199 313 84 8 chr6 114976596 114976727 -67438515 - MIR SINE MIR -3 259 119 3237 148 60 74 chr6 114976795 114977638 -67437604 + LTR1 LTR ERV1 1 785 0 1019 102 0 22 chr6 114977864 114978001 -67437241 - FLAM_C SINE Alu -4 139 6 1402 169 161 0 chr6 114978090 114978401 -67436841 + AluJb SINE Alu 1 353 0 2192 127 0 7 chr6 114978575 114978883 -67436359 + AluSx SINE Alu 1 306 -6 589 202 61 0 chr6 114978938 114979052 -67436190 - AluJo/FRAM SINE Alu -13 299 179 321 94 0 19 chr6 114979052 114979105 -67436137 - AluSc SINE Alu -171 128 77 1203 159 0 75 chr6 114979106 114979198 -67436044 - AluSg SINE Alu -100 210 113 2323 111 3 0 chr6 114979198 114979495 -67435747 - AluSx SINE Alu -14 298 1 1203 159 0 75 chr6 114979495 114979628 -67435614 - AluSg SINE Alu -197 113 2 407 108 203 0 chr6 114979628 114979702 -67435540 + MER3 DNA MER1_type 121 209 0 324 143 0 0 chr6 114979660 114979709 -67435533 - MER3 DNA MER1_type -120 89 41 * 188 398 10 0 chr6 114979777 114979875 -67435367 + MIR3 SINE MIR 64 162 -46 2266 115 0 0 chr6 114980186 114980482 -67434760 + AluSx SINE Alu 1 296 -16 342 241 66 60 chr6 114980632 114980798 -67434444 - L2 LINE L2 -1473 1841 1675 2083 115 28 0 chr6 114981014 114981301 -67433941 + AluSg SINE Alu 1 295 -15 189 226 32 48 chr6 114981542 114981604 -67433638 + L2 LINE L2 3174 3234 -79 2379 98 0 0 chr6 114982119 114982424 -67432818 + AluY SINE Alu 1 305 -6 202 345 0 0 chr6 114983113 114983171 -67432071 + MIR SINE MIR 1 58 -204 211 250 183 0 chr6 114983198 114983258 -67431984 + MIR SINE MIR 166 236 -26 2405 88 3 0 chr6 114983288 114983582 -67431660 + AluSp SINE Alu 1 295 -18 292 264 82 73 chr6 114983597 114983707 -67431535 + MIR3 SINE MIR 60 170 -38 2237 94 17 0 chr6 114983713 114984000 -67431242 - AluSp SINE Alu -11 302 11 309 150 242 75 chr6 114984175 114984229 -67431013 + L1ME4a LINE L1 5977 6021 -100 2369 97 3 0 chr6 114984229 114984529 -67430713 - AluSq SINE Alu -12 301 1 309 150 242 75 chr6 114984529 114984594 -67430648 + L1ME4a LINE L1 6021 6116 -5 2139 101 14 3 chr6 114984842 114985129 -67430113 + AluSp SINE Alu 1 290 -23 2482 49 3 26 chr6 114985142 114985446 -67429796 + AluY SINE Alu 1 297 -14 915 124 23 0 chr6 114985529 114985658 -67429584 - FLAM_C SINE Alu -11 132 1 1362 115 188 9 chr6 114985731 114985949 -67429293 - AluSg1 SINE Alu -52 257 1 682 165 26 0 chr6 114985972 114986087 -67429155 - FLAM_C SINE Alu -15 118 1 21 36 0 0 chr6 114986128 114986156 -67429086 + AT_rich Low_complexity Low_complexity 1 28 0 2372 110 0 0 chr6 114986293 114986594 -67428648 - AluSx SINE Alu -7 305 5 2434 93 3 0 chr6 114987352 114987664 -67427578 + AluSp SINE Alu 1 313 0 190 246 15 62 chr6 114987747 114987812 -67427430 - MIR SINE MIR -51 211 150 2409 88 0 13 chr6 114987882 114988199 -67427043 - AluSq SINE Alu 0 313 1 325 263 0 12 chr6 114988915 114988995 -67426247 - MIR3 SINE MIR -31 177 99 2341 99 0 0 chr6 114989168 114989461 -67425781 + AluSg SINE Alu 1 293 -17 960 201 72 52 chr6 114989495 114989524 -67425718 + MIR SINE MIR 6 33 -229 2522 63 3 0 chr6 114989524 114989823 -67425419 + AluY SINE Alu 1 300 -11 960 201 72 52 chr6 114989823 114990042 -67425200 + MIR SINE MIR 33 259 -3 2296 84 6 10 chr6 114990091 114990402 -67424840 - AluY SINE Alu 0 311 2 2463 87 0 0 chr6 114990635 114990935 -67424307 + AluY SINE Alu 1 300 -11 2450 70 0 10 chr6 114991627 114991926 -67423316 + AluY SINE Alu 1 296 -15 1832 173 105 20 chr6 114991958 114992358 -67422884 - Tigger2a DNA MER2_type 0 434 1 2327 88 17 0 chr6 114992420 114992714 -67422528 + AluSg SINE Alu 1 299 -11 682 101 20 0 chr6 114992714 114992813 -67422429 - L1PB4 LINE L1 -14 6142 6042 1960 133 21 3 chr6 114993485 114993770 -67421472 + AluJb SINE Alu 5 294 -18 2555 57 0 10 chr6 114993774 114994073 -67421169 + AluY SINE Alu 1 296 -15 460 246 134 28 chr6 114994074 114994253 -67420989 + L1ME4a LINE L1 5922 6119 -2 315 0 0 0 chr6 114995506 114995541 -67419701 + (TG)n Simple_repeat Simple_repeat 2 36 0 1091 57 0 0 chr6 114995541 114995665 -67419577 - AluY SINE Alu -187 124 1 1881 184 10 0 chr6 114995774 114996083 -67419159 - AluJb SINE Alu 0 312 1 2328 113 0 3 chr6 114996166 114996476 -67418766 + AluSx SINE Alu 1 309 -3 300 657 0 0 chr6 114996481 114996656 -67418586 + FAM SINE Alu 1 175 0 213 39 0 0 chr6 114996742 114996768 -67418474 + (A)n Simple_repeat Simple_repeat 1 26 0 2630 68 0 0 chr6 114997366 114997674 -67417568 - AluY SINE Alu -3 308 1 2344 109 3 0 chr6 114997679 114997981 -67417261 - AluSp SINE Alu -10 303 1 2342 104 0 13 chr6 114998517 114998833 -67416409 - AluSx SINE Alu 0 312 1 349 185 281 55 chr6 114999802 114999948 -67415294 + MER58C DNA MER1_type 1 179 -36 738 161 0 46 chr6 114999968 115000098 -67415144 + FLAM_C SINE Alu 1 124 -9 742 180 8 0 chr6 115000105 115000227 -67415015 - FLAM_C SINE Alu -19 124 2 368 91 0 0 chr6 115000227 115000282 -67414960 + MER58C DNA MER1_type 160 214 -1 2093 105 42 0 chr6 115000571 115000857 -67414385 + AluSq SINE Alu 3 300 -13 2325 108 0 3 chr6 115000986 115001292 -67413950 - AluSc SINE Alu -4 305 1 2152 125 16 13 chr6 115001473 115001784 -67413458 - AluSx SINE Alu 0 312 1 227 250 19 0 chr6 115001827 115001879 -67413363 + C-rich Low_complexity Low_complexity 4 56 0 388 250 15 53 chr6 115001934 115002066 -67413176 + MIR SINE MIR 20 146 -62 2624 46 0 13 chr6 115002079 115002386 -67412856 - AluY SINE Alu -8 303 1 913 110 8 0 chr6 115002593 115002711 -67412531 + AluSq/x SINE Alu 15 133 -180 2423 81 0 0 chr6 115002714 115003010 -67412232 + AluSq SINE Alu 1 296 -17 2251 88 3 17 chr6 115003013 115003310 -67411932 + AluSc SINE Alu 1 293 -16 23 33 0 0 chr6 115003310 115003340 -67411902 + AT_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 115003429 115003466 -67411776 + AT_rich Low_complexity Low_complexity 1 37 0 2569 60 0 19 chr6 115003593 115003909 -67411333 + AluY SINE Alu 1 310 -1 2203 115 7 0 chr6 115004049 115004344 -67410898 + AluSc SINE Alu 1 297 -12 2212 104 0 26 chr6 115004349 115004657 -67410585 + AluSq SINE Alu 1 300 -13 1049 197 79 0 chr6 115004687 115004890 -67410352 - MER20 DNA MER1_type 0 219 1 1140 99 0 0 chr6 115005068 115005209 -67410033 - AluY SINE Alu -170 141 1 2537 60 0 22 chr6 115005349 115005666 -67409576 - AluY SINE Alu -1 310 1 30 27 0 0 chr6 115005793 115005830 -67409412 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr6 115005919 115005949 -67409293 + AT_rich Low_complexity Low_complexity 1 30 0 2246 88 3 17 chr6 115005949 115006246 -67408996 - AluSc SINE Alu -16 293 1 2423 81 0 0 chr6 115006249 115006545 -67408697 - AluSq SINE Alu -17 296 1 913 110 8 0 chr6 115006548 115006666 -67408576 - AluSq/x SINE Alu -180 133 15 2490 55 0 0 chr6 115006873 115007166 -67408076 + AluY SINE Alu 1 293 -18 2192 127 0 7 chr6 115007438 115007746 -67407496 + AluSx SINE Alu 1 306 -6 592 189 63 0 chr6 115007801 115007912 -67407330 - AluJ SINE Alu -13 299 182 880 149 0 8 chr6 115007912 115008046 -67407196 - AluJ SINE Alu -179 133 1 2372 94 3 3 chr6 115008062 115008360 -67406882 - AluSx SINE Alu -14 298 1 284 87 0 0 chr6 115008589 115008635 -67406607 + Alu SINE Alu 255 300 -2 555 286 92 37 chr6 115008845 115009139 -67406103 + MLT1H LTR MaLR 11 320 -229 2161 100 20 30 chr6 115009268 115009567 -67405675 - AluSx SINE Alu -16 296 1 320 294 35 0 chr6 115009817 115009960 -67405282 + L1ME LINE L1 5635 5782 -339 1801 143 3 54 chr6 115010176 115010490 -67404752 + AluJb SINE Alu 1 298 -14 1871 197 8 12 chr6 115010565 115010645 -67404597 + L1MB7 LINE L1 7 86 -6378 800 158 8 0 chr6 115010645 115010772 -67404470 + FLAM_C SINE Alu 1 128 -5 1871 197 8 12 chr6 115010772 115011174 -67404068 + L1MB7 LINE L1 86 6143 -321 2593 113 175 103 chr6 115011182 115012182 -67403060 + LTR12 LTR ERV1 377 714 0 2352 144 39 159 chr6 115012183 115012315 -67402927 + L1MCa LINE L1 377 523 -5903 2445 92 0 10 chr6 115012315 115012629 -67402613 - AluY SINE Alu 0 311 1 2474 71 0 3 chr6 115012629 115012926 -67402316 - AluY SINE Alu -15 296 1 2352 144 39 159 chr6 115012926 115013186 -67402056 + L1MCa LINE L1 522 812 -5614 2066 103 7 0 chr6 115013186 115013458 -67401784 + AluSc SINE Alu 14 287 -22 2352 144 39 159 chr6 115013458 115013582 -67401660 + L1MCa LINE L1 812 949 -5477 2216 120 3 3 chr6 115013582 115013891 -67401351 + AluSc SINE Alu 1 309 0 2352 144 39 159 chr6 115013891 115013906 -67401336 + L1MCa LINE L1 949 964 -5462 1873 125 52 0 chr6 115013906 115014178 -67401064 + AluSq SINE Alu 21 306 -7 2352 144 39 159 chr6 115014178 115014325 -67400917 + L1MCa LINE L1 964 1127 -5299 2170 96 0 0 chr6 115014325 115014596 -67400646 + AluSg SINE Alu 33 303 -7 2352 144 39 159 chr6 115014596 115014633 -67400609 + L1MCa LINE L1 1127 996 -5430 903 167 8 0 chr6 115014633 115014765 -67400477 - FLAM_C SINE Alu 0 133 1 2352 144 39 159 chr6 115014765 115014840 -67400402 + L1MCa LINE L1 995 1077 -5349 981 161 0 46 chr6 115014844 115015018 -67400224 - FRAM SINE Alu -13 163 1 2292 146 33 45 chr6 115015018 115015532 -67399710 + L1MCa LINE L1 1074 1581 -4845 1285 160 6 68 chr6 115015525 115015709 -67399533 + L1 LINE L1 4267 4422 -1724 * 1904 119 65 0 chr6 115015709 115015987 -67399255 + AluSq SINE Alu 1 296 -17 1285 160 6 68 chr6 115015987 115016140 -67399102 + L1 LINE L1 4422 4583 -1563 2257 71 0 14 chr6 115016151 115016431 -67398811 + AluY SINE Alu 16 291 -20 879 221 22 11 chr6 115016647 115016828 -67398414 - MLT1E LTR MaLR -410 183 1 525 200 24 79 chr6 115016828 115016954 -67398288 - MER33 DNA MER1_type -204 120 4 1726 192 7 10 chr6 115017090 115017419 -67397823 - AluJb SINE Alu 0 312 3 2119 118 45 0 chr6 115017455 115017742 -67397500 - AluSx SINE Alu -12 300 1 882 158 0 22 chr6 115018291 115018430 -67396812 + FLAM_C SINE Alu 1 136 -7 27 0 0 0 chr6 115018430 115018457 -67396785 + AT_rich Low_complexity Low_complexity 1 27 0 2359 106 3 0 chr6 115018786 115019089 -67396153 - AluSx SINE Alu -8 304 1 1734 176 13 29 chr6 115019152 115019459 -67395783 - AluJb SINE Alu -10 302 1 1035 170 18 0 chr6 115019536 115019707 -67395535 + FRAM SINE Alu 1 174 -2 2442 61 0 19 chr6 115019747 115020057 -67395185 - AluY SINE Alu -6 305 2 190 329 51 38 chr6 115020140 115020219 -67395023 + MER5B DNA MER1_type 3 82 -96 1567 245 118 18 chr6 115020222 115020679 -67394563 + MLT1J LTR MaLR 3 505 -6 342 348 149 0 chr6 115020695 115020916 -67394326 + L2 LINE L2 2494 2747 -567 2574 47 7 3 chr6 115020920 115021220 -67394022 + AluY SINE Alu 1 301 -10 840 227 44 157 chr6 115021250 115021293 -67393949 + LTR32 LTR ERVL 30 76 -395 1934 171 0 10 chr6 115021293 115021598 -67393644 - AluSx SINE Alu -10 302 1 225 0 0 0 chr6 115021598 115021623 -67393619 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 746 174 0 9 chr6 115021623 115021738 -67393504 - FLAM_C SINE Alu -18 115 2 840 227 44 157 chr6 115021738 115021932 -67393310 + LTR32 LTR ERVL 74 288 -183 2170 113 13 10 chr6 115021932 115022234 -67393008 + AluSx SINE Alu 1 303 -9 840 227 44 157 chr6 115022234 115022394 -67392848 + LTR32 LTR ERVL 288 366 -105 2281 106 7 0 chr6 115022394 115022695 -67392547 - AluSp SINE Alu -10 303 1 840 227 44 157 chr6 115022695 115022791 -67392451 + LTR32 LTR ERVL 366 471 0 513 320 63 74 chr6 115022814 115023098 -67392144 + L2 LINE L2 2974 3254 -18 998 186 183 43 chr6 115024199 115024521 -67390721 - LTR48B LTR ERV1 -2 642 339 2239 85 0 0 chr6 115024524 115024795 -67390447 - AluSx SINE Alu -6 306 36 23 33 0 0 chr6 115025235 115025265 -67389977 + AT_rich Low_complexity Low_complexity 1 30 0 1996 78 35 4 chr6 115025443 115025746 -67389496 - AluSp SINE Alu 0 332 22 972 210 79 9 chr6 115025755 115025969 -67389273 + MIR SINE MIR 31 259 -3 1985 117 25 0 chr6 115026131 115026405 -67388837 + AluSx SINE Alu 18 298 -14 1780 154 37 30 chr6 115026413 115026543 -67388699 + AluJb SINE Alu 1 129 -183 2247 95 0 0 chr6 115026543 115026828 -67388414 + AluSq SINE Alu 6 290 -23 1780 154 37 30 chr6 115026828 115026995 -67388247 + AluJb SINE Alu 129 300 -12 704 195 8 8 chr6 115026999 115027122 -67388120 + FLAM_A SINE Alu 1 123 -10 2195 115 3 16 chr6 115027493 115027807 -67387435 - AluSx SINE Alu -2 310 1 515 124 124 0 chr6 115027808 115027921 -67387321 - L1MB7 LINE L1 -244 5940 5814 5045 149 58 2 chr6 115027922 115028778 -67386464 - L1MC1 LINE L1 -2 6331 5428 857 136 0 30 chr6 115028799 115028931 -67386311 - FLAM_C SINE Alu -4 129 2 922 160 14 78 chr6 115028938 115029013 -67386229 - AluJo SINE Alu -3 309 231 2061 151 0 10 chr6 115029013 115029318 -67385924 + AluJb SINE Alu 1 302 -10 922 160 14 78 chr6 115029318 115029461 -67385781 - AluJo SINE Alu -81 231 105 405 0 0 0 chr6 115029470 115029515 -67385727 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 203 248 20 10 chr6 115030103 115030204 -67385038 + (CGGGG)n Simple_repeat Simple_repeat 2 103 0 34 72 0 0 chr6 115030492 115030561 -67384681 + GC_rich Low_complexity Low_complexity 1 69 0 2475 77 0 0 chr6 115033415 115033715 -67381527 - AluSg SINE Alu -10 300 1 1762 172 7 13 chr6 115034274 115034404 -67380838 + AluJo SINE Alu 5 134 -178 2326 120 0 0 chr6 115034404 115034712 -67380530 + AluSx SINE Alu 1 308 -4 1762 172 7 13 chr6 115034712 115034884 -67380358 + AluJo SINE Alu 134 305 -7 2365 90 3 0 chr6 115034927 115035226 -67380016 + AluSp SINE Alu 2 301 -12 453 282 100 77 chr6 115035226 115035334 -67379908 + L1ME4a LINE L1 5680 5784 -337 1641 203 0 13 chr6 115035334 115035635 -67379607 - AluJo SINE Alu -15 297 1 453 282 100 77 chr6 115035635 115035728 -67379514 + L1ME4a LINE L1 5784 5891 -230 2485 65 0 0 chr6 115035728 115036019 -67379223 - AluSc SINE Alu -18 291 1 453 282 100 77 chr6 115036019 115036075 -67379167 + L1ME4a LINE L1 5891 5944 -177 936 135 0 0 chr6 115036104 115036237 -67379005 + FLAM_C SINE Alu 1 133 0 242 314 35 12 chr6 115036693 115036779 -67378463 - MIR3 SINE MIR -34 174 87 282 56 0 0 chr6 115036845 115036881 -67378361 + (A)n Simple_repeat Simple_repeat 1 36 0 593 258 52 115 chr6 115036958 115037079 -67378163 + L2 LINE L2 3000 3127 -145 1388 178 43 120 chr6 115037079 115037255 -67377987 + MLT1B LTR MaLR 4 192 -198 2111 122 0 16 chr6 115037255 115037559 -67377683 + AluSx SINE Alu 7 305 -7 2251 108 0 3 chr6 115037559 115037856 -67377386 + AluSx SINE Alu 1 296 -16 1388 178 43 120 chr6 115037856 115038095 -67377147 + MLT1B LTR MaLR 190 388 -2 593 258 52 115 chr6 115038095 115038260 -67376982 + L2 LINE L2 3127 3268 -4 1494 182 39 73 chr6 115038528 115038760 -67376482 - MLT1A2 LTR MaLR 0 374 159 2561 56 13 0 chr6 115038760 115039062 -67376180 - AluSp SINE Alu -7 306 1 1494 182 39 73 chr6 115039062 115039213 -67376029 - MLT1A2 LTR MaLR -215 159 4 212 184 61 0 chr6 115039345 115039394 -67375848 - L2 LINE L2 0 3313 3262 2238 116 3 3 chr6 115039416 115039726 -67375516 - AluSg SINE Alu 0 310 1 1541 127 0 0 chr6 115039778 115039990 -67375252 + AluJb SINE Alu 86 297 -15 311 361 104 13 chr6 115040107 115040337 -67374905 + MIR SINE MIR 12 262 0 739 266 104 65 chr6 115041089 115041437 -67373805 - Charlie8 DNA MER1_type -59 282 116 2373 51 0 0 chr6 115041437 115041733 -67373509 - AluY SINE Alu -15 296 1 739 266 104 65 chr6 115041733 115041851 -67373391 - Charlie8 DNA MER1_type -225 116 4 1218 98 0 0 chr6 115042173 115042337 -67372905 + AluSp SINE Alu 137 300 -13 687 187 90 19 chr6 115042482 115042637 -67372605 - FRAM SINE Alu -9 167 2 189 0 0 0 chr6 115043904 115043925 -67371317 + (A)n Simple_repeat Simple_repeat 1 21 0 2094 101 0 0 chr6 115043931 115044233 -67371009 + AluSc SINE Alu 1 302 0 266 350 135 33 chr6 115044269 115044632 -67370610 - L2 LINE L2 -62 3210 2811 2124 72 0 11 chr6 115045133 115045411 -67369831 + AluY SINE Alu 2 276 -35 1559 117 94 15 chr6 115045513 115045778 -67369464 + AluY SINE Alu 24 309 -2 189 147 29 0 chr6 115045808 115045842 -67369400 - MIR SINE MIR -11 251 217 2106 123 7 0 chr6 115045986 115046296 -67368946 + AluSx SINE Alu 1 312 0 2453 52 0 10 chr6 115046499 115046806 -67368436 + AluY SINE Alu 1 304 -7 2372 75 3 0 chr6 115046920 115047225 -67368017 + AluSp SINE Alu 1 306 -7 183 333 81 11 chr6 115047296 115047383 -67367859 + MER5A DNA MER1_type 97 189 0 2115 120 0 3 chr6 115047433 115047733 -67367509 + AluSx SINE Alu 1 299 -13 487 254 89 58 chr6 115047831 115047889 -67367353 + L1M4c LINE L1 2266 2321 -4063 1721 152 75 96 chr6 115047889 115047946 -67367296 + MSTB1 LTR MaLR 1 58 -374 2330 87 0 3 chr6 115047946 115048256 -67366986 + AluSq SINE Alu 1 309 -4 1721 152 75 96 chr6 115048256 115048638 -67366604 + MSTB1 LTR MaLR 58 431 -1 487 254 89 58 chr6 115048638 115048803 -67366439 + L1M4c LINE L1 2321 2496 -3888 1129 180 10 5 chr6 115048811 115049017 -67366225 + AluJb SINE Alu 15 221 -91 1087 181 0 5 chr6 115049119 115049312 -67365930 - AluJb SINE Alu -120 192 1 603 197 15 51 chr6 115049331 115049468 -67365774 - FLAM_C SINE Alu -1 132 1 387 314 129 66 chr6 115049499 115049817 -67365425 - L2 LINE L2 -31 3241 2904 2443 59 7 0 chr6 115049891 115050195 -67365047 - AluSp SINE Alu -7 306 1 250 279 12 35 chr6 115050299 115050385 -67364857 + MIR SINE MIR 173 256 -6 1333 190 142 0 chr6 115050762 115051015 -67364227 - AluJo SINE Alu -13 289 1 374 196 134 0 chr6 115051154 115051266 -67363976 - MER115 DNA AcHobo -30 663 537 1905 123 7 20 chr6 115051266 115051567 -67363675 + AluSx SINE Alu 1 297 -15 1671 172 0 7 chr6 115051642 115051938 -67363304 - AluJo SINE Alu -18 294 1 2069 128 0 0 chr6 115051964 115052262 -67362980 + AluSx SINE Alu 1 298 -14 499 228 27 0 chr6 115052429 115052539 -67362703 + MIR SINE MIR 69 180 -65 477 192 19 10 chr6 115052559 115052663 -67362579 + MER53 DNA DNA 9 113 -76 1659 148 10 46 chr6 115052753 115053056 -67362186 + AluJo SINE Alu 1 292 -20 326 308 8 54 chr6 115053180 115053310 -67361932 + L2 LINE L2 3137 3260 -12 452 107 27 0 chr6 115053532 115053607 -67361635 + CT-rich Low_complexity Low_complexity 2 78 0 776 196 0 0 chr6 115053611 115053744 -67361498 - FLAM_C SINE Alu 0 133 1 2379 59 0 41 chr6 115053791 115054111 -67361131 + AluY SINE Alu 1 307 -4 1114 217 54 0 chr6 115054218 115054458 -67360784 + MIR SINE MIR 5 257 -5 2075 124 0 3 chr6 115054632 115054938 -67360304 + AluSx SINE Alu 1 305 -7 1811 163 3 3 chr6 115054989 115055295 -67359947 - AluJb SINE Alu -5 307 2 1183 49 11 27 chr6 115055317 115055345 -67359897 + (TTTC)n Simple_repeat Simple_repeat 1 207 0 1183 49 11 27 chr6 115055345 115055528 -67359714 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2028 128 0 0 chr6 115055655 115055953 -67359289 - AluSg SINE Alu -12 298 1 2271 118 33 12 chr6 115056281 115056613 -67358629 + MER1B DNA MER1_type 1 339 0 207 218 0 0 chr6 115056627 115056682 -67358560 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 189 107 0 0 chr6 115056734 115056762 -67358480 + (TA)n Simple_repeat Simple_repeat 1 28 0 1801 127 4 11 chr6 115056781 115057057 -67358185 - AluSx SINE Alu -38 274 1 6738 88 13 11 chr6 115057057 115057194 -67358048 - HSMAR1 DNA Mariner -62 1225 1090 2457 109 56 0 chr6 115057194 115057551 -67357691 + MER51B LTR ERV1 1 377 0 6738 88 13 11 chr6 115057551 115058311 -67356931 - HSMAR1 DNA Mariner -197 1090 326 1105 111 49 0 chr6 115058313 115058475 -67356767 - AluSp SINE Alu -10 303 134 2197 119 0 0 chr6 115058475 115058786 -67356456 - AluSp SINE Alu -2 311 1 2360 96 12 0 chr6 115058786 115059118 -67356124 - HSMAR1 DNA Mariner -949 338 3 348 137 0 0 chr6 115059138 115059189 -67356053 + MER5A DNA MER1_type 121 171 -18 277 233 14 14 chr6 115059208 115059281 -67355961 + CT-rich Low_complexity Low_complexity 3 75 0 1932 74 11 19 chr6 115059281 115059550 -67355692 - AluY SINE Alu -44 267 1 2355 39 0 0 chr6 115059718 115059999 -67355243 + AluY SINE Alu 1 281 -30 584 188 0 184 chr6 115060116 115060148 -67355094 + L2 LINE L2 2075 2111 -1203 2055 113 0 19 chr6 115060148 115060466 -67354776 - AluSx SINE Alu 0 312 1 584 188 0 184 chr6 115060466 115060694 -67354548 + L2 LINE L2 2111 2287 -1027 2856 169 63 4 chr6 115060694 115061202 -67354040 + MER68 LTR ERV1 1 538 -24 541 199 97 62 chr6 115061260 115061436 -67353806 + L2 LINE L2 2712 2893 -421 589 257 28 78 chr6 115061440 115061658 -67353584 - L2 LINE L2 -20 3293 3087 1639 134 46 29 chr6 115061659 115061784 -67353458 + AluSx SINE Alu 1 122 -190 1977 117 21 0 chr6 115061784 115062075 -67353167 + AluSx SINE Alu 5 301 -11 2424 41 0 0 chr6 115062077 115062372 -67352870 + AluY SINE Alu 1 295 -16 1639 134 46 29 chr6 115062372 115062550 -67352692 + AluSx SINE Alu 122 312 0 225 0 0 0 chr6 115063006 115063031 -67352211 + (T)n Simple_repeat Simple_repeat 1 25 0 1605 133 4 0 chr6 115063515 115063764 -67351478 - AluSx SINE Alu -62 250 1 892 92 0 0 chr6 115064092 115064211 -67351031 + AluSq/x SINE Alu 1 119 -194 312 175 70 84 chr6 115064233 115064298 -67350944 + MER117 DNA MER1_type 21 85 -112 713 172 31 8 chr6 115064298 115064426 -67350816 + FLAM_C SINE Alu 1 131 -2 312 175 70 84 chr6 115064426 115064503 -67350739 + MER117 DNA MER1_type 85 161 -36 2293 94 3 0 chr6 115064894 115065202 -67350040 - AluSx SINE Alu -3 309 1 758 159 48 0 chr6 115065262 115065388 -67349854 - AluJb SINE Alu -179 133 2 882 98 33 13 chr6 115065566 115065719 -67349523 + L1MB4 LINE L1 6025 6180 0 647 128 10 157 chr6 115065806 115066010 -67349232 + L1M4 LINE L1 4524 4697 -1449 656 165 18 0 chr6 115066019 115066128 -67349114 + L1MD2 LINE L1 6169 6279 -80 289 189 0 0 chr6 115066246 115066299 -67348943 - AluSx SINE Alu -4 296 244 1400 91 5 0 chr6 115066303 115066490 -67348752 - AluSx SINE Alu -124 188 1 1716 115 4 4 chr6 115066490 115066742 -67348500 - AluSx SINE Alu -16 296 45 2090 233 58 19 chr6 115066742 115067192 -67348050 + L1ME1 LINE L1 5567 6045 -121 945 143 0 0 chr6 115067192 115067325 -67347917 - FLAM_C SINE Alu 0 133 1 2090 233 58 19 chr6 115067325 115067445 -67347797 + L1ME1 LINE L1 6045 6159 -7 2427 47 0 7 chr6 115067451 115067749 -67347493 - AluY SINE Alu -15 296 1 1907 130 10 3 chr6 115068325 115068626 -67346616 + AluSx SINE Alu 1 303 -9 1783 136 44 0 chr6 115068633 115068751 -67346491 + AluSx SINE Alu 3 114 -198 261 0 0 0 chr6 115068751 115068780 -67346462 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1783 136 44 0 chr6 115068780 115068933 -67346309 + AluSx SINE Alu 114 286 -26 984 171 0 37 chr6 115068959 115069146 -67346096 + AluJo SINE Alu 1 180 -132 1034 149 0 11 chr6 115069456 115069630 -67345612 + AluSg SINE Alu 1 172 -138 2241 91 7 0 chr6 115069738 115070045 -67345197 - AluSx SINE Alu -3 309 1 1895 62 18 29 chr6 115070433 115070705 -67344537 + AluY SINE Alu 37 305 -6 378 250 15 53 chr6 115070718 115070850 -67344392 - MIR SINE MIR -62 146 20 233 310 0 0 chr6 115070905 115070963 -67344279 + G-rich Low_complexity Low_complexity 4 61 0 1976 130 10 7 chr6 115070999 115071306 -67343936 + AluSx SINE Alu 1 308 -4 2294 91 0 3 chr6 115071488 115071795 -67343447 + AluSc SINE Alu 1 306 -3 282 314 29 29 chr6 115071916 115072018 -67343224 - L2 LINE L2 -1 3312 3211 1309 73 0 0 chr6 115074052 115074217 -67341025 + AluSg/x SINE Alu 124 288 -24 964 111 33 0 chr6 115074252 115074405 -67340837 + BC200 scRNA scRNA 2 159 -41 181 309 74 49 chr6 115074586 115074667 -67340575 + L2 LINE L2 3174 3256 -16 1073 91 0 26 chr6 115074781 115074935 -67340307 - AluSq SINE Alu -23 290 141 1388 167 22 11 chr6 115075062 115075363 -67339879 + AluSx SINE Alu 5 308 0 616 186 141 149 chr6 115075970 115076167 -67339075 + MIR SINE MIR 5 201 -61 2193 101 3 0 chr6 115076167 115076465 -67338777 - AluSg SINE Alu -11 299 1 616 186 141 149 chr6 115076465 115076515 -67338727 + MIR SINE MIR 201 250 -12 2112 314 80 19 chr6 115076858 115077788 -67337454 - L3 LINE CR1 -6 1571 586 1606 76 0 9 chr6 115077939 115078150 -67337092 - AluSc SINE Alu -100 209 1 357 327 73 94 chr6 115078155 115078303 -67336939 - L3 LINE CR1 -989 588 438 2198 92 3 0 chr6 115078303 115078598 -67336644 - AluSg SINE Alu -14 296 1 357 327 73 94 chr6 115078598 115078862 -67336380 - L3 LINE CR1 -1139 438 185 946 159 0 0 chr6 115078881 115079032 -67336210 - AluSp SINE Alu -26 287 137 1559 172 3 58 chr6 115079616 115079941 -67335301 + AluJo SINE Alu 1 307 -5 1678 163 9 35 chr6 115079980 115080299 -67334943 + AluJb SINE Alu 1 311 -1 274 315 102 24 chr6 115080342 115080469 -67334773 + L2 LINE L2 3125 3261 -11 2036 117 10 0 chr6 115080529 115080820 -67334422 + AluSx SINE Alu 1 294 -18 17882 80 7 1 chr6 115080830 115083148 -67332094 + L1PA5 LINE L1 1 2333 -3813 21990 36 8 5 chr6 115083254 115084523 -67330719 + L1PA5 LINE L1 2696 3959 -2195 2521 46 0 0 chr6 115084523 115084825 -67330417 + AluY SINE Alu 1 302 -9 21990 36 8 5 chr6 115084825 115087018 -67328224 + L1PA5 LINE L1 3959 6152 -2 286 266 25 13 chr6 115087157 115087236 -67328006 + MER5B DNA MER1_type 95 174 -4 2233 107 0 0 chr6 115087284 115087592 -67327650 + AluSx SINE Alu 1 308 -4 318 336 30 0 chr6 115088124 115088258 -67326984 + L1MC4 LINE L1 7613 7750 -292 2067 115 10 0 chr6 115088282 115088577 -67326665 + AluSx SINE Alu 1 298 -14 1999 107 17 7 chr6 115088671 115088971 -67326271 - AluSx SINE Alu -9 303 1 195 69 0 0 chr6 115089138 115089167 -67326075 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 1883 129 0 0 chr6 115089281 115089553 -67325689 - AluSx SINE Alu -10 302 31 1783 165 10 0 chr6 115089721 115090018 -67325224 - AluJb SINE Alu -12 300 1 2014 114 7 0 chr6 115090028 115090325 -67324917 - AluSx SINE Alu -13 299 1 1955 131 7 0 chr6 115090596 115090894 -67324348 + AluSg SINE Alu 1 300 -10 2146 103 0 13 chr6 115090904 115091205 -67324037 + AluSp SINE Alu 1 297 -16 798 167 0 8 chr6 115091304 115091430 -67323812 - FLAM_C SINE Alu -17 126 2 216 167 42 0 chr6 115091709 115091757 -67323485 + (TA)n Simple_repeat Simple_repeat 1 50 0 578 80 40 0 chr6 115091760 115091835 -67323407 + U6 snRNA snRNA 2 79 -28 270 0 0 0 chr6 115091880 115091910 -67323332 + (CA)n Simple_repeat Simple_repeat 2 31 0 1336 106 5 35 chr6 115091927 115092126 -67323116 - AluSg/x SINE Alu -16 294 102 1051 64 0 0 chr6 115092158 115092283 -67322959 - AluSp SINE Alu -188 125 1 333 191 0 0 chr6 115092296 115092359 -67322883 - AluSc SINE Alu 0 299 237 656 158 0 0 chr6 115092359 115092460 -67322782 - AluSx SINE Alu -210 102 2 1822 178 7 10 chr6 115092488 115092797 -67322445 + AluJo SINE Alu 1 308 -4 2179 137 0 3 chr6 115092801 115093114 -67322128 + AluJb SINE Alu 1 312 0 1506 80 0 61 chr6 115093145 115093357 -67321885 + AluSx SINE Alu 1 199 -113 6194 129 71 70 chr6 115093458 115094117 -67321125 - PABL_A-int LTR ERV1 -1496 3519 2862 2427 72 14 0 chr6 115094117 115094410 -67320832 - AluSp SINE Alu -16 297 1 6194 129 71 70 chr6 115094410 115094531 -67320711 - PABL_A-int LTR ERV1 -2153 2862 2743 1949 108 63 0 chr6 115094531 115094800 -67320442 - AluSc SINE Alu -21 288 3 6194 129 71 70 chr6 115094800 115095102 -67320140 - PABL_A-int LTR ERV1 -2272 2743 2432 2188 139 0 0 chr6 115095102 115095412 -67319830 - AluSx SINE Alu -2 310 1 6194 129 71 70 chr6 115095412 115095609 -67319633 - PABL_A-int LTR ERV1 -2583 2432 2237 2252 100 10 3 chr6 115095609 115095910 -67319332 - AluSc SINE Alu -6 303 1 1373 195 92 7 chr6 115096194 115096466 -67318776 + LTR48 LTR ERV1 65 359 -428 24 53 0 0 chr6 115096466 115096504 -67318738 + AT_rich Low_complexity Low_complexity 1 38 0 2177 95 21 0 chr6 115096506 115096789 -67318453 - AluSg SINE Alu -21 289 1 1222 174 85 53 chr6 115096797 115096961 -67318281 - AluJb SINE Alu -22 290 112 351 44 0 0 chr6 115096961 115097006 -67318236 + (TG)n Simple_repeat Simple_repeat 2 46 0 1222 174 85 53 chr6 115097006 115097122 -67318120 - AluJb SINE Alu -200 112 1 181 356 82 44 chr6 115099066 115099336 -67315906 - L2 LINE L2 -575 2739 2460 265 306 135 0 chr6 115099366 115099477 -67315765 - L2 LINE L2 -10 3262 3137 2111 109 25 0 chr6 115099488 115099773 -67315469 + AluSg SINE Alu 1 292 -18 217 337 11 18 chr6 115100450 115100705 -67314537 + CT-rich Low_complexity Low_complexity 1 253 0 201 222 0 0 chr6 115100841 115100877 -67314365 + C-rich Low_complexity Low_complexity 1 36 0 1439 113 0 0 chr6 115100987 115101182 -67314060 + AluSg/x SINE Alu 117 311 -1 2206 115 0 0 chr6 115101182 115101478 -67313764 + AluSc SINE Alu 1 296 -13 2321 92 0 13 chr6 115101614 115101918 -67313324 + AluSx SINE Alu 1 300 -12 2320 93 3 0 chr6 115102977 115103268 -67311974 - AluSq SINE Alu -21 292 1 356 159 43 0 chr6 115104365 115104434 -67310808 + MIR SINE MIR 74 145 -63 2300 99 3 0 chr6 115105400 115105693 -67309549 + AluSp SINE Alu 1 294 -19 343 246 75 15 chr6 115105707 115105841 -67309401 - MIR SINE MIR -11 251 110 2182 124 3 0 chr6 115106301 115106600 -67308642 + AluSq SINE Alu 2 301 -12 1537 123 5 0 chr6 115106731 115106943 -67308299 - AluSg/x SINE Alu -12 298 86 326 238 83 0 chr6 115157126 115157210 -67258032 + MIR SINE MIR 44 134 -74 186 280 110 60 chr6 115157272 115157372 -67257870 + MER5A DNA MER1_type 84 188 -1 29 70 0 0 chr6 115157804 115157861 -67257381 + AT_rich Low_complexity Low_complexity 1 57 0 24 32 0 0 chr6 115157908 115157939 -67257303 + AT_rich Low_complexity Low_complexity 1 31 0 337 157 0 0 chr6 115157939 115157990 -67257252 - Alu SINE Alu -251 51 1 786 272 158 3 chr6 115158713 115159048 -67256194 + LTR16C LTR ERVL 103 489 -2 337 343 0 0 chr6 115159118 115159220 -67256022 - MIR SINE MIR -123 139 38 260 327 52 27 chr6 115159798 115159946 -67255296 - MIR SINE MIR -60 148 21 1511 168 6 73 chr6 115160663 115160979 -67254263 + AluJo SINE Alu 1 295 -17 2018 142 0 0 chr6 115160981 115161292 -67253950 + AluY SINE Alu 1 311 0 1905 129 17 17 chr6 115161641 115161936 -67253306 - AluSx SINE Alu -17 295 1 186 255 0 20 chr6 115162153 115162204 -67253038 + MIR SINE MIR 116 165 -97 332 348 0 9 chr6 115162793 115162912 -67252330 - MIR SINE MIR -60 148 34 225 0 0 0 chr6 115163155 115163180 -67252062 + (TA)n Simple_repeat Simple_repeat 2 26 0 1189 227 162 22 chr6 115164000 115164450 -67250792 - LTR33 LTR ERVL -4 517 5 350 247 159 60 chr6 115164520 115164702 -67250540 + L1ME4a LINE L1 5838 6037 -84 1489 149 95 29 chr6 115164710 115165026 -67250216 + MER44D DNA MER2_type 2 608 -1 462 79 0 0 chr6 115165353 115165416 -67249826 + (CTTA)n Simple_repeat Simple_repeat 1 63 0 1782 144 14 25 chr6 115165417 115165701 -67249541 - AluJo SINE Alu -31 281 1 1842 156 55 3 chr6 115165853 115166179 -67249063 - MER2 DNA MER2_type -1 343 1 453 315 7 20 chr6 115166248 115166546 -67248696 + L1MC4 LINE L1 7708 8001 -41 1829 261 94 48 chr6 115166560 115166711 -67248531 - L1MEc LINE L1 -4425 1971 1829 2165 124 49 3 chr6 115166711 115167057 -67248185 - MER47A DNA MER2_type -4 362 1 1829 261 94 48 chr6 115167057 115167161 -67248081 - L1MEc LINE L1 -4567 1829 1731 1836 84 161 0 chr6 115167161 115167410 -67247832 + AluSg1 SINE Alu 6 294 -15 1829 261 94 48 chr6 115167410 115168371 -67246871 - L1MEc LINE L1 -4665 1731 697 349 332 33 77 chr6 115168399 115168596 -67246646 - L1MEc LINE L1 -5679 717 542 2491 61 0 3 chr6 115168596 115168893 -67246349 - AluY SINE Alu -15 296 1 349 332 33 77 chr6 115168893 115169059 -67246183 - L1MEc LINE L1 -5854 542 370 311 167 0 0 chr6 115169266 115169320 -67245922 - MLT1H LTR MaLR 0 549 496 23 33 0 0 chr6 115169418 115169448 -67245794 + AT_rich Low_complexity Low_complexity 1 30 0 389 308 71 42 chr6 115169861 115170169 -67245073 + L1MEd LINE L1 52 368 -5751 303 236 49 92 chr6 115170483 115170788 -67244454 + L1M4 LINE L1 2873 3164 -2982 28 0 0 0 chr6 115170854 115170882 -67244360 + AT_rich Low_complexity Low_complexity 1 28 0 885 146 0 0 chr6 115170885 115171008 -67244234 - AluJb SINE Alu -189 123 1 24 32 0 0 chr6 115171017 115171048 -67244194 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr6 115171072 115171097 -67244145 + AT_rich Low_complexity Low_complexity 1 25 0 1173 132 13 0 chr6 115171102 115171261 -67243981 + AluSg/x SINE Alu 138 298 -14 2078 135 23 0 chr6 115172148 115172451 -67242791 + AluSx SINE Alu 1 310 -2 2061 128 0 27 chr6 115173047 115173345 -67241897 + AluSx SINE Alu 3 292 -20 297 75 0 0 chr6 115174193 115174233 -67241009 + (CA)n Simple_repeat Simple_repeat 2 41 0 2607 227 63 38 chr6 115174550 115174787 -67240455 + L1ME3 LINE L1 5266 5496 -666 2041 98 7 49 chr6 115174787 115175093 -67240149 + AluSx SINE Alu 5 297 -15 2607 227 63 38 chr6 115175093 115175728 -67239514 + L1ME3 LINE L1 5496 6160 -2 201 254 0 0 chr6 115175738 115175793 -67239449 + GA-rich Low_complexity Low_complexity 1 55 0 343 297 68 27 chr6 115176833 115176981 -67238261 + L1M LINE L1 5275 5428 -746 230 224 40 0 chr6 115178061 115178137 -67237105 + MER94 DNA DNA 22 100 -34 17486 94 59 28 chr6 115179273 115181899 -67233343 + Charlie3 DNA MER1_type 1 2706 -4 21 0 0 0 chr6 115182754 115182775 -67232467 + AT_rich Low_complexity Low_complexity 1 21 0 185 250 11 0 chr6 115182940 115183032 -67232210 + (TA)n Simple_repeat Simple_repeat 2 94 0 1714 154 13 30 chr6 115183183 115183482 -67231760 - AluJo SINE Alu -18 294 1 231 269 0 15 chr6 115183630 115183697 -67231545 + L2 LINE L2 3207 3272 0 246 339 190 6 chr6 115184816 115184990 -67230252 + MIR SINE MIR 32 237 -25 529 43 0 141 chr6 115185157 115185210 -67230032 - MADE1 DNA Mariner 0 80 44 1906 173 10 0 chr6 115185210 115185516 -67229726 + AluSx SINE Alu 1 309 -3 529 43 0 141 chr6 115185516 115185554 -67229688 - MADE1 DNA Mariner -36 44 2 227 332 208 0 chr6 115187032 115187162 -67228080 + MIR3 SINE MIR 38 196 -51 753 246 66 31 chr6 115187798 115188026 -67227216 + MIR SINE MIR 13 248 -14 255 61 0 0 chr6 115189466 115189499 -67225743 + (TG)n Simple_repeat Simple_repeat 2 34 0 779 142 0 31 chr6 115189502 115189629 -67225613 - FLAM_C SINE Alu -9 124 2 1562 160 67 19 chr6 115189807 115190075 -67225167 - AluJo SINE Alu -25 287 7 2284 114 0 0 chr6 115190157 115190456 -67224786 - AluSc SINE Alu -10 299 1 693 261 100 70 chr6 115191220 115191306 -67223936 + MIR SINE MIR 2 84 -178 711 179 135 0 chr6 115191306 115191462 -67223780 - MER45A DNA AcHobo 0 178 2 693 261 100 70 chr6 115191462 115191616 -67223626 + MIR SINE MIR 84 249 -13 2567 172 10 22 chr6 115192261 115192766 -67222476 - L1MC1 LINE L1 0 6333 5835 1108 176 0 0 chr6 115193008 115193184 -67222058 - AluJb SINE Alu -3 309 134 325 317 67 0 chr6 115193455 115193559 -67221683 - L2 LINE L2 -40 3232 3122 1622 220 84 2 chr6 115193726 115194167 -67221075 + Charlie4a DNA MER1_type 17 493 -15 456 298 69 102 chr6 115194611 115195074 -67220168 + L2 LINE L2 2824 3271 -1 608 235 15 85 chr6 115195158 115195358 -67219884 - MER112 DNA MER1_type -10 250 65 774 113 70 17 chr6 115195542 115195657 -67219585 - FRAM SINE Alu -19 157 37 1014 151 17 0 chr6 115195675 115195847 -67219395 + L1MC1 LINE L1 6014 6188 -145 2854 161 10 10 chr6 115196163 115196659 -67218583 + L1MC1 LINE L1 5481 5976 -357 576 159 0 0 chr6 115196659 115196747 -67218495 + AluS SINE Alu 2 89 -224 1937 158 9 15 chr6 115197064 115197190 -67218052 + L1MC1 LINE L1 5855 5980 -353 1931 161 0 0 chr6 115197190 115197481 -67217761 + AluSx SINE Alu 7 297 -15 1937 158 9 15 chr6 115197481 115197689 -67217553 + L1MC1 LINE L1 5980 6187 -146 784 152 51 7 chr6 115197855 115197993 -67217249 + L1MC1 LINE L1 6190 6333 0 419 231 166 58 chr6 115198151 115198246 -67216996 - LTR16B LTR ERVL -2 462 379 845 156 39 0 chr6 115198246 115198374 -67216868 + FLAM_C SINE Alu 1 133 0 2157 122 3 3 chr6 115198380 115198691 -67216551 + AluSx SINE Alu 1 311 -1 419 231 166 58 chr6 115198691 115198883 -67216359 - LTR16B LTR ERVL -89 375 136 1082 153 0 6 chr6 115199241 115199404 -67215838 + AluSx SINE Alu 1 162 -150 303 273 23 0 chr6 115199411 115199499 -67215743 + MIR SINE MIR 100 189 -73 304 202 43 11 chr6 115199499 115199593 -67215649 + (TA)n Simple_repeat Simple_repeat 1 97 0 211 176 0 0 chr6 115199596 115199630 -67215612 + MIR SINE MIR 216 249 -13 262 132 0 0 chr6 115199647 115199685 -67215557 + AluSp SINE Alu 133 170 -133 266 237 117 40 chr6 115200099 115200261 -67214981 - MLT1L LTR MaLR -341 170 1 1872 144 31 0 chr6 115201321 115201613 -67213629 - AluJb SINE Alu -11 301 1 4999 103 18 8 chr6 115201709 115202419 -67212823 - L1MA2 LINE L1 0 6304 5588 445 314 69 37 chr6 115202424 115202774 -67212468 + MARNA DNA Mariner 37 397 -189 360 266 78 52 chr6 115203915 115204069 -67211173 + MIR SINE MIR 50 207 -55 2094 128 0 10 chr6 115204076 115204374 -67210868 + AluSc SINE Alu 1 295 -14 362 245 118 33 chr6 115204374 115204525 -67210717 + L1ME1 LINE L1 6014 6184 0 202 220 100 0 chr6 115204537 115204587 -67210655 + MIR SINE MIR 195 249 -13 405 294 20 0 chr6 115204915 115205017 -67210225 - L2 LINE L2 0 3272 3169 216 0 0 0 chr6 115205024 115205048 -67210194 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1571 73 5 0 chr6 115205090 115205282 -67209960 - L1PA14 LINE L1 -6 6155 5963 2071 139 3 0 chr6 115205285 115205573 -67209669 - AluSx SINE Alu -23 289 1 855 227 12 0 chr6 115205578 115205741 -67209501 + Tigger6 DNA MER2_type 1427 1591 -6 244 245 181 53 chr6 115206557 115206621 -67208621 + MIR SINE MIR 45 126 -82 2590 53 0 0 chr6 115206621 115206922 -67208320 - AluY SINE Alu -10 301 1 244 245 181 53 chr6 115206922 115206951 -67208291 + MIR SINE MIR 126 150 -58 873 224 112 0 chr6 115207087 115207283 -67207959 + MER58A DNA MER1_type 4 221 -3 30 0 0 0 chr6 115207494 115207524 -67207718 + AT_rich Low_complexity Low_complexity 1 30 0 241 321 128 0 chr6 115207888 115207997 -67207245 + L2 LINE L2 2929 3051 -221 410 331 29 29 chr6 115208007 115208146 -67207096 - L2 LINE L2 -5 3267 3129 227 286 43 14 chr6 115208276 115208346 -67206896 + L2 LINE L2 3236 3307 -6 23 0 0 0 chr6 115208771 115208794 -67206448 + AT_rich Low_complexity Low_complexity 1 23 0 353 272 43 0 chr6 115210068 115210160 -67205082 - L1MC5 LINE L1 -60 7901 7806 401 325 25 0 chr6 115210365 115210485 -67204757 - L2 LINE L2 -25 3247 3125 493 328 93 76 chr6 115210566 115210963 -67204279 - L2 LINE L2 -341 2973 2570 784 305 23 12 chr6 115210965 115211221 -67204021 - L2 LINE L2 -158 3155 2897 409 203 0 0 chr6 115211395 115211464 -67203778 - U4 snRNA snRNA -76 69 1 1377 183 56 11 chr6 115211559 115211844 -67203398 - MLT1A1 LTR MaLR -67 298 1 643 322 131 39 chr6 115211844 115212403 -67202839 - L2 LINE L2 -401 2913 2304 23 0 0 0 chr6 115212831 115212854 -67202388 + AT_rich Low_complexity Low_complexity 1 23 0 711 218 32 51 chr6 115213131 115213347 -67201895 + pTR5 LTR ERV1 743 954 -1484 1588 57 0 5 chr6 115213458 115213650 -67201592 - L1PA3 LINE L1 0 6155 5965 511 283 91 60 chr6 115213678 115214133 -67201109 - MLT1H LTR MaLR -36 513 1 2020 59 0 0 chr6 115214281 115214518 -67200724 + AluY SINE Alu 71 307 -4 952 340 64 36 chr6 115214593 115215281 -67199961 + L2 LINE L2 2031 2737 -577 451 321 26 38 chr6 115215522 115215787 -67199455 + L2 LINE L2 2838 3099 -173 471 304 74 27 chr6 115215841 115215989 -67199253 + LTR67 LTR ERVL 36 190 -367 277 297 29 29 chr6 115216178 115216316 -67198926 + LTR67 LTR ERVL 416 553 -4 313 309 36 36 chr6 115216446 115216556 -67198686 - L2 LINE L2 -12 3301 3192 1034 108 0 0 chr6 115216570 115216699 -67198543 + FLAM_C SINE Alu 1 129 -4 205 140 0 40 chr6 115217045 115217095 -67198147 + (TTTTC)n Simple_repeat Simple_repeat 4 51 0 452 83 0 42 chr6 115217271 115217367 -67197875 + (TA)n Simple_repeat Simple_repeat 1 92 0 1887 239 65 41 chr6 115217432 115217848 -67197394 + L1ME3 LINE L1 5388 5828 -334 1404 186 0 77 chr6 115217848 115218175 -67197067 + AluJb SINE Alu 1 302 -10 1887 239 65 41 chr6 115218175 115218412 -67196830 + L1ME3 LINE L1 5828 6058 -104 2156 88 0 31 chr6 115218440 115218734 -67196508 - AluSx SINE Alu -27 285 1 326 197 40 0 chr6 115218822 115218898 -67196344 + L1ME3 LINE L1 6082 6160 -2 180 111 0 0 chr6 115218931 115218958 -67196284 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 23 54 0 0 chr6 115219694 115219731 -67195511 + GC_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr6 115219787 115219811 -67195431 + GC_rich Low_complexity Low_complexity 1 24 0 4019 143 25 34 chr6 115220454 115220963 -67194279 + Tigger1 DNA MER2_type 1712 2215 -203 1828 174 0 0 chr6 115220963 115221251 -67193991 - AluJo SINE Alu -24 288 1 4019 143 25 34 chr6 115221251 115221452 -67193790 + Tigger1 DNA MER2_type 2215 2416 -2 2567 50 0 0 chr6 115221707 115222006 -67193236 - AluY SINE Alu -12 299 1 1640 193 0 10 chr6 115222143 115222438 -67192804 + AluJo SINE Alu 11 302 -10 22 35 0 0 chr6 115222547 115222576 -67192666 + AT_rich Low_complexity Low_complexity 1 29 0 555 56 0 0 chr6 115222742 115222813 -67192429 + (CTTA)n Simple_repeat Simple_repeat 1 71 0 1761 144 14 25 chr6 115222814 115223098 -67192144 - AluJo SINE Alu -31 281 1 185 250 11 0 chr6 115223385 115223477 -67191765 + (TA)n Simple_repeat Simple_repeat 2 94 0 1666 153 13 33 chr6 115223628 115223928 -67191314 - AluJo SINE Alu -18 294 1 29 28 0 0 chr6 115225463 115225499 -67189743 + AT_rich Low_complexity Low_complexity 1 36 0 654 252 113 67 chr6 115225623 115225861 -67189381 - MIR SINE MIR -3 259 11 2120 139 3 7 chr6 115226247 115226557 -67188685 - AluSq SINE Alu -4 309 1 222 37 0 0 chr6 115226651 115226678 -67188564 + (ATG)n Simple_repeat Simple_repeat 3 29 0 677 251 6 44 chr6 115226692 115226875 -67188367 - MIR SINE MIR -12 250 75 2697 20 3 0 chr6 115227332 115227631 -67187611 - AluY SINE Alu -11 300 1 2373 46 7 0 chr6 115228326 115228684 -67186558 + AluY SINE Alu 1 360 0 184 294 118 50 chr6 115228939 115229058 -67186184 + MIR SINE MIR 21 147 -61 222 91 0 0 chr6 115230697 115230730 -67184512 + (TG)n Simple_repeat Simple_repeat 2 34 0 818 142 0 31 chr6 115230733 115230860 -67184382 - FLAM_C SINE Alu -9 124 2 1602 156 67 7 chr6 115231038 115231307 -67183935 - AluJo SINE Alu -25 287 3 313 309 36 36 chr6 115231323 115231433 -67183809 + L2 LINE L2 3192 3301 -12 240 349 9 0 chr6 115231595 115231701 -67183541 - LTR67 LTR ERVL -35 522 416 471 304 74 27 chr6 115231890 115232038 -67183204 - LTR67 LTR ERVL -367 190 36 450 321 26 38 chr6 115232092 115232357 -67182885 - L2 LINE L2 -173 3099 2838 985 338 62 41 chr6 115232598 115233311 -67181931 - L2 LINE L2 -577 2737 2010 2015 63 0 0 chr6 115233361 115233600 -67181642 - AluY SINE Alu -2 309 71 532 283 91 60 chr6 115233748 115234203 -67181039 + MLT1H LTR MaLR 1 513 -36 1402 91 0 11 chr6 115234231 115234418 -67180824 + L1PA3 LINE L1 5965 6149 -6 202 317 0 12 chr6 115234592 115234674 -67180568 + (CTA)n Simple_repeat Simple_repeat 3 83 0 557 269 135 5 chr6 115234682 115234875 -67180367 - MIR SINE MIR -16 246 29 241 279 180 37 chr6 115234912 115235073 -67180169 - MIR SINE MIR -13 249 66 832 128 8 0 chr6 115235873 115235990 -67179252 + FLAM_C SINE Alu 1 118 -25 1965 130 9 22 chr6 115235998 115236314 -67178928 - AluSx SINE Alu 0 312 1 30 45 0 0 chr6 115236314 115236358 -67178884 + AT_rich Low_complexity Low_complexity 1 44 0 654 252 113 67 chr6 115236482 115236720 -67178522 - MIR SINE MIR -3 259 11 2193 135 0 6 chr6 115237106 115237418 -67177824 - AluSq SINE Alu -3 310 1 243 0 0 0 chr6 115237512 115237539 -67177703 + (ATG)n Simple_repeat Simple_repeat 3 29 0 677 251 6 44 chr6 115237553 115237736 -67177506 - MIR SINE MIR -12 250 75 2467 53 3 0 chr6 115238193 115238497 -67176745 - AluY SINE Alu -6 305 1 188 333 129 67 chr6 115238940 115239150 -67176092 + L2 LINE L2 3045 3267 -5 2653 40 0 0 chr6 115239191 115239490 -67175752 + AluY SINE Alu 1 299 -12 16837 114 17 17 chr6 115239745 115239946 -67175296 - Tigger1 DNA MER2_type -2 2416 2216 1811 181 0 0 chr6 115239946 115240234 -67175008 + AluJo SINE Alu 1 288 -24 16837 114 17 17 chr6 115240234 115240882 -67174360 - Tigger1 DNA MER2_type -202 2216 1569 1950 130 27 10 chr6 115240882 115241175 -67174067 - AluJb SINE Alu -14 298 1 16837 114 17 17 chr6 115241175 115242739 -67172503 - Tigger1 DNA MER2_type -848 1570 2 2067 129 0 7 chr6 115242815 115243121 -67172121 - AluSx SINE Alu 0 304 1 202 224 224 0 chr6 115243929 115243978 -67171264 - L2 LINE L2 -9 3263 3204 325 320 99 41 chr6 115244119 115244482 -67170760 - L2 LINE L2 -339 2975 2592 3143 104 87 2 chr6 115245030 115245501 -67169741 - MER9 LTR ERVK 0 511 1 336 271 235 6 chr6 115245733 115245899 -67169343 + L3 LINE CR1 1098 1301 -276 1889 152 17 0 chr6 115246055 115246345 -67168897 - AluJo SINE Alu -15 297 3 216 402 31 0 chr6 115246591 115246688 -67168554 + L3 LINE CR1 1420 1519 -58 785 248 71 4 chr6 115246705 115246943 -67168299 + MER112 DNA MER1_type 3 256 0 2327 55 0 7 chr6 115247179 115247472 -67167770 - AluY SINE Alu -20 291 1 313 272 24 64 chr6 115249170 115249295 -67165947 - L2 LINE L2 -23 3290 3171 1863 173 33 3 chr6 115249316 115249646 -67165596 + MER2 DNA MER2_type 6 345 0 1449 268 189 46 chr6 115249774 115250227 -67165015 - L2 LINE L2 -341 2973 2586 1234 151 144 36 chr6 115250227 115250505 -67164737 + AluJo SINE Alu 1 308 -4 1449 268 189 46 chr6 115250505 115250567 -67164675 - L2 LINE L2 -728 2586 2534 1852 72 4 68 chr6 115250567 115250846 -67164396 + AluY SINE Alu 39 299 -12 1449 268 189 46 chr6 115250846 115251094 -67164148 - L2 LINE L2 -780 2534 2099 650 200 176 29 chr6 115251178 115251383 -67163859 - L2 LINE L2 -1914 1400 1166 343 250 102 19 chr6 115251535 115251643 -67163599 - L2 LINE L2 -10 3303 3187 300 303 80 93 chr6 115251850 115252108 -67163134 - L2 LINE L2 -3 3269 3014 2586 37 0 0 chr6 115252108 115252403 -67162839 + AluY SINE Alu 1 295 -16 300 303 80 93 chr6 115252403 115252468 -67162774 - L2 LINE L2 -258 3014 2950 449 310 129 7 chr6 115252545 115252700 -67162542 - MIR SINE MIR -86 176 3 483 290 59 6 chr6 115253064 115253233 -67162009 - MIR SINE MIR 0 262 85 376 338 34 40 chr6 115253575 115253723 -67161519 + MIR SINE MIR 2 148 -114 511 331 83 67 chr6 115253911 115254271 -67160971 - L2 LINE L2 -4 3268 2903 840 272 92 0 chr6 115254546 115254785 -67160457 - MIR SINE MIR 0 262 2 275 168 112 75 chr6 115257768 115257875 -67157367 - L1ME4a LINE L1 -21 6100 5990 29 0 0 0 chr6 115258201 115258230 -67157012 + AT_rich Low_complexity Low_complexity 1 29 0 1851 156 7 7 chr6 115259178 115259491 -67155751 - AluSx SINE Alu 0 313 1 1621 315 132 47 chr6 115260323 115261105 -67154137 + L2 LINE L2 1223 1937 -1377 333 0 0 0 chr6 115261105 115261142 -67154100 + (TG)n Simple_repeat Simple_repeat 2 38 0 1621 315 132 47 chr6 115261142 115261635 -67153607 + L2 LINE L2 1937 2645 -669 2243 106 3 3 chr6 115261635 115261936 -67153306 + AluSq SINE Alu 1 301 -12 1621 315 132 47 chr6 115261936 115262141 -67153101 + L2 LINE L2 2645 2831 -483 327 295 18 0 chr6 115262476 115262588 -67152654 + L2 LINE L2 3163 3276 -37 1686 138 85 0 chr6 115262914 115263219 -67152023 + L1MB3 LINE L1 5853 6183 0 561 254 0 8 chr6 115263562 115263684 -67151558 - L2 LINE L2 -4 3309 3189 238 65 0 0 chr6 115265924 115265955 -67149287 - U2 snRNA snRNA -127 61 31 2071 95 15 0 chr6 115265956 115266230 -67149012 + AluSp SINE Alu 27 304 -9 947 189 78 15 chr6 115267161 115267367 -67147875 - MER20 DNA MER1_type 0 219 1 2319 91 3 0 chr6 115268658 115268956 -67146286 - AluSq SINE Alu -14 299 1 1637 231 54 18 chr6 115268956 115269402 -67145840 - L1ME1 LINE L1 -34 6132 5671 35 0 0 0 chr6 115269456 115269491 -67145751 + AT_rich Low_complexity Low_complexity 1 35 0 644 104 42 0 chr6 115269492 115269588 -67145654 - U6 snRNA snRNA -5 102 3 2566 240 127 70 chr6 115269593 115271116 -67144126 - L1ME1 LINE L1 -1794 4352 2743 347 316 67 36 chr6 115271203 115271396 -67143846 + L2 LINE L2 2582 2780 -534 922 241 5 30 chr6 115271745 115271944 -67143298 + MIR SINE MIR 5 198 -64 1097 138 36 26 chr6 115271946 115272141 -67143101 - MER46A DNA MER2_type -2 234 38 189 0 0 0 chr6 115272196 115272217 -67143025 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 1711 174 55 3 chr6 115272945 115273273 -67141969 + MER7A DNA MER2_type 4 346 0 679 107 124 0 chr6 115273480 115273601 -67141641 + MER85 DNA T2_type 1 136 -3 1405 173 73 30 chr6 115274319 115274648 -67140594 - MER2 DNA MER2_type -1 343 1 1226 117 0 0 chr6 115275196 115275367 -67139875 - AluSg/x SINE Alu -11 299 129 261 222 0 19 chr6 115275418 115275472 -67139770 - Looper DNA T2_type -2 1556 1504 2275 96 14 0 chr6 115275508 115275800 -67139442 + AluSg SINE Alu 2 297 -13 927 155 42 0 chr6 115275835 115275977 -67139265 - AluJo SINE Alu -164 148 1 441 0 0 0 chr6 115275999 115276048 -67139194 + (TG)n Simple_repeat Simple_repeat 2 50 0 4586 186 87 21 chr6 115276048 115276933 -67138309 - Looper DNA T2_type -76 1482 434 2101 135 0 0 chr6 115276933 115277230 -67138012 - AluSx SINE Alu -15 297 1 4586 186 87 21 chr6 115277230 115277695 -67137547 - Looper DNA T2_type -1124 434 1 1953 174 0 0 chr6 115277902 115278201 -67137041 + AluJo SINE Alu 1 299 -13 198 103 0 0 chr6 115278677 115278706 -67136536 + (TG)n Simple_repeat Simple_repeat 2 30 0 1719 152 0 76 chr6 115278901 115279230 -67136012 - AluSx SINE Alu -8 304 1 204 167 0 0 chr6 115279315 115279363 -67135879 + (TA)n Simple_repeat Simple_repeat 1 48 0 371 130 0 0 chr6 115279372 115279426 -67135816 - MER66B LTR ERV1 -139 347 294 1139 146 28 73 chr6 115279610 115279857 -67135385 + MER46A DNA MER2_type 1 236 0 248 290 134 0 chr6 115280047 115280285 -67134957 + L1ME4a LINE L1 5812 6081 -40 744 111 111 0 chr6 115280996 115281113 -67134129 + AluJo SINE Alu 1 130 -182 368 83 0 179 chr6 115281583 115281667 -67133575 - AluSq/x SINE Alu -194 109 41 189 107 0 0 chr6 115282187 115282215 -67133027 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 4367 179 34 14 chr6 115282242 115283133 -67132109 + Charlie1a DNA MER1_type 36 944 -511 1725 169 15 0 chr6 115283153 115283426 -67131816 + AluJo SINE Alu 5 281 -31 186 103 0 0 chr6 115283429 115283458 -67131784 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 623 10 31 31 chr6 115283478 115283575 -67131667 + (TAAAA)n Simple_repeat Simple_repeat 2 98 0 820 201 7 32 chr6 115283575 115283729 -67131513 + AluJo SINE Alu 137 286 -26 1495 204 57 30 chr6 115283740 115284176 -67131066 + Charlie1a DNA MER1_type 957 1404 -51 404 279 152 19 chr6 115284983 115285141 -67130101 - MER5A DNA MER1_type -1 188 10 330 245 82 110 chr6 115285451 115285504 -67129738 - L1MC4 LINE L1 0 8042 7989 2153 104 7 0 chr6 115285504 115285791 -67129451 + AluSx SINE Alu 9 297 -15 330 245 82 110 chr6 115285791 115285982 -67129260 - L1MC4 LINE L1 -53 7989 7805 2151 234 66 20 chr6 115286700 115287247 -67127995 - MLT1E LTR MaLR 0 593 22 315 388 100 0 chr6 115287496 115287666 -67127576 + L1ME2 LINE L1 260 446 -5950 1365 189 39 26 chr6 115287873 115288180 -67127062 + MER58B DNA MER1_type 30 340 -1 584 288 189 19 chr6 115288191 115288774 -67126468 + L1ME2 LINE L1 628 1309 -5087 2157 183 66 63 chr6 115288823 115289111 -67126131 + L1MB7 LINE L1 5207 5493 -691 1387 204 23 20 chr6 115289111 115289410 -67125832 + AluJb SINE Alu 1 300 -12 2157 183 66 63 chr6 115289410 115289855 -67125387 + L1MB7 LINE L1 5493 5932 -252 1627 250 67 63 chr6 115289856 115290054 -67125188 + L1ME2 LINE L1 3422 3618 -2597 2255 138 0 0 chr6 115290054 115290374 -67124868 + 7SLRNA srpRNA srpRNA 1 320 0 1627 250 67 63 chr6 115290374 115290675 -67124567 + L1ME2 LINE L1 3618 3927 -2288 1781 176 7 14 chr6 115290675 115290971 -67124271 + AluJb SINE Alu 1 294 -18 1627 250 67 63 chr6 115290971 115291213 -67124029 + L1ME2 LINE L1 3927 4167 -2048 3140 197 73 19 chr6 115291764 115292570 -67122672 + L1ME2 LINE L1 5384 6233 0 546 257 100 29 chr6 115292884 115293125 -67122117 + MIR SINE MIR 5 262 0 484 233 34 17 chr6 115293331 115293463 -67121779 - L1ME LINE L1 -384 5782 5652 918 193 35 10 chr6 115293481 115293678 -67121564 - L1ME LINE L1 -481 5683 5482 263 167 21 0 chr6 115294646 115294694 -67120548 - L1ME LINE L1 -5937 133 85 4645 152 35 76 chr6 115294694 115295523 -67119719 + Tigger6a DNA MER2_type 1 863 -734 1668 159 22 32 chr6 115295523 115295838 -67119404 + AluJo SINE Alu 1 312 0 4645 152 35 76 chr6 115295838 115295935 -67119307 + Tigger6a DNA MER2_type 863 962 -635 2056 154 3 0 chr6 115295935 115296233 -67119009 - AluSx SINE Alu -13 299 1 4645 152 35 76 chr6 115296233 115296401 -67118841 + Tigger6a DNA MER2_type 962 1077 -6 250 245 181 53 chr6 115297217 115297281 -67117961 + MIR SINE MIR 45 126 -82 2590 50 0 0 chr6 115297281 115297583 -67117659 - AluY SINE Alu -9 302 1 250 245 181 53 chr6 115297583 115297612 -67117630 + MIR SINE MIR 126 150 -58 787 224 112 0 chr6 115297749 115297945 -67117297 + MER58A DNA MER1_type 4 221 -3 30 0 0 0 chr6 115298156 115298186 -67117056 + AT_rich Low_complexity Low_complexity 1 30 0 253 321 128 0 chr6 115298550 115298659 -67116583 + L2 LINE L2 2929 3051 -221 417 331 29 29 chr6 115298669 115298808 -67116434 - L2 LINE L2 -5 3267 3129 231 286 43 14 chr6 115298938 115299008 -67116234 + L2 LINE L2 3236 3307 -6 23 0 0 0 chr6 115299433 115299456 -67115786 + AT_rich Low_complexity Low_complexity 1 23 0 208 216 0 59 chr6 115300142 115300193 -67115049 + polypyrimidine Low_complexity Low_complexity 4 51 0 308 272 43 0 chr6 115300735 115300827 -67114415 - L1MC5 LINE L1 -60 7901 7806 397 325 25 0 chr6 115301032 115301152 -67114090 - L2 LINE L2 -25 3247 3125 508 330 91 73 chr6 115301233 115301630 -67113612 - L2 LINE L2 -341 2973 2570 800 305 23 12 chr6 115301632 115301888 -67113354 - L2 LINE L2 -158 3155 2897 377 203 0 0 chr6 115302063 115302132 -67113110 - U4 snRNA snRNA -76 69 1 1250 175 57 11 chr6 115302227 115302507 -67112735 - MLT1A1 LTR MaLR -67 298 6 683 322 131 39 chr6 115302512 115303071 -67112171 - L2 LINE L2 -401 2913 2304 23 0 0 0 chr6 115303499 115303522 -67111720 + AT_rich Low_complexity Low_complexity 1 23 0 4228 138 28 37 chr6 115303799 115304699 -67110543 + pTR5 LTR ERV1 743 1634 -804 27262 115 16 23 chr6 115304710 115311208 -67104034 - L1PA8 LINE L1 -4 6483 5 598 211 151 18 chr6 115311333 115311402 -67103840 + MER5A DNA MER1_type 1 59 -130 2038 103 26 0 chr6 115311402 115311673 -67103569 + AluSg SINE Alu 1 278 -32 598 211 151 18 chr6 115311673 115311769 -67103473 + MER5A DNA MER1_type 59 188 -1 687 127 0 101 chr6 115311778 115311936 -67103306 - MER20 DNA MER1_type 0 219 78 188 333 43 32 chr6 115312150 115312243 -67102999 - MIR SINE MIR -12 250 157 3296 60 13 13 chr6 115313490 115313938 -67101304 - L1PA6 LINE L1 0 6154 5707 299 321 89 0 chr6 115315111 115315223 -67100019 + MIR SINE MIR 67 188 -74 922 181 29 44 chr6 115315381 115315585 -67099657 - AluJo SINE Alu -17 295 95 203 361 16 0 chr6 115316136 115316197 -67099045 - MIR SINE MIR -171 91 30 5223 130 171 5 chr6 115316204 115317259 -67097983 + Tigger3b DNA MER2_type 1 1230 -1 597 220 94 38 chr6 115317280 115317439 -67097803 - MER5B DNA MER1_type -4 174 7 218 258 65 16 chr6 115318848 115318910 -67096332 + MER91C DNA MER1_type 25 89 -51 451 233 58 29 chr6 115319072 115319224 -67096018 - MIR SINE MIR -1 261 3 647 321 95 61 chr6 115319287 115319760 -67095482 - L2 LINE L2 -10 3303 2815 248 163 0 0 chr6 115319883 115319926 -67095316 + MER97c DNA MER1_type? 27 69 -1021 300 296 230 0 chr6 115320046 115320198 -67095044 - L2 LINE L2 -600 2714 2528 2106 115 3 17 chr6 115321632 115321928 -67093314 + AluSx SINE Alu 7 298 -14 536 134 18 12 chr6 115321974 115322132 -67093110 + CT-rich Low_complexity Low_complexity 1 158 0 291 253 84 39 chr6 115322798 115322952 -67092290 - LTR41 LTR ERVL -612 161 1 202 246 131 0 chr6 115323024 115323085 -67092157 - L2 LINE L2 -26 3246 3178 181 340 204 34 chr6 115323271 115323418 -67091824 + MIR3 SINE MIR 30 201 -7 22 0 0 0 chr6 115323659 115323681 -67091561 + AT_rich Low_complexity Low_complexity 1 22 0 4173 154 74 21 chr6 115323720 115324657 -67090585 + L1MB7 LINE L1 5197 6184 0 2286 92 3 10 chr6 115324806 115325111 -67090131 - AluSp SINE Alu -9 304 2 21 0 0 0 chr6 115325338 115325359 -67089883 + AT_rich Low_complexity Low_complexity 1 21 0 1392 213 50 3 chr6 115325806 115326106 -67089136 - MER82 DNA MER2_type -9 644 331 789 202 89 0 chr6 115326107 115326275 -67088967 - MER82 DNA MER2_type -469 184 2 22 0 0 0 chr6 115326426 115326448 -67088794 + AT_rich Low_complexity Low_complexity 1 22 0 208 246 77 0 chr6 115326791 115326856 -67088386 + L2 LINE L2 3204 3273 -40 24 0 0 0 chr6 115326894 115326918 -67088324 + AT_rich Low_complexity Low_complexity 1 24 0 256 161 65 32 chr6 115327002 115327064 -67088178 + MARNA DNA Mariner 377 440 -146 384 85 0 0 chr6 115327313 115327334 -67087908 + (GA)n Simple_repeat Simple_repeat 2 22 -38 351 0 0 0 chr6 115327334 115327373 -67087869 + (TG)n Simple_repeat Simple_repeat 1 39 0 384 85 0 0 chr6 115327373 115327410 -67087832 + (GA)n Simple_repeat Simple_repeat 21 60 0 422 285 56 7 chr6 115328172 115328316 -67086926 - MIR SINE MIR -66 196 46 449 273 102 72 chr6 115328955 115329329 -67085913 - L2 LINE L2 0 3313 2929 1295 183 0 21 chr6 115329626 115329861 -67085381 + AluJb SINE Alu 81 310 -2 32 0 0 0 chr6 115329883 115329915 -67085327 + AT_rich Low_complexity Low_complexity 1 32 0 2220 119 0 0 chr6 115329923 115330217 -67085025 - AluSx SINE Alu -18 294 1 1033 182 17 0 chr6 115330219 115330395 -67084847 - AluJb SINE Alu -11 301 123 1242 158 168 3 chr6 115331182 115331486 -67083756 - L1MB2 LINE L1 -2 6169 5816 835 138 0 8 chr6 115331486 115331609 -67083633 + AluJb SINE Alu 1 122 -190 207 69 0 0 chr6 115331609 115331638 -67083604 + (TG)n Simple_repeat Simple_repeat 2 30 0 740 102 87 0 chr6 115331656 115331783 -67083459 - L1MB2 LINE L1 -354 5829 5692 1286 185 27 124 chr6 115331783 115332227 -67083015 - MLT2D LTR ERVL 0 414 14 1509 152 169 3 chr6 115332230 115332592 -67082650 - L1MB2 LINE L1 -482 5701 5280 2098 138 0 0 chr6 115332598 115332895 -67082347 - AluSx SINE Alu -15 297 1 290 309 117 27 chr6 115332899 115333381 -67081861 - L1MC/D LINE L1 -537 5584 5287 54 49 0 0 chr6 115333381 115333463 -67081779 + AT_rich Low_complexity Low_complexity 1 82 0 24 0 0 0 chr6 115333525 115333549 -67081693 + AT_rich Low_complexity Low_complexity 1 24 0 928 195 19 0 chr6 115333609 115333768 -67081474 + AluJb SINE Alu 134 295 -17 835 241 57 9 chr6 115333837 115334049 -67081193 - MER58A DNA MER1_type -1 223 2 510 304 121 40 chr6 115334050 115334523 -67080719 - L1MC/D LINE L1 -1247 4899 4389 625 138 0 60 chr6 115335483 115335599 -67079643 + AluSg/x SINE Alu 194 302 -8 24 0 0 0 chr6 115336622 115336646 -67078596 + AT_rich Low_complexity Low_complexity 1 24 0 215 310 0 0 chr6 115336791 115336849 -67078393 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 297 288 91 15 chr6 115336849 115336981 -67078261 - L2 LINE L2 -7 3306 3165 2291 212 63 66 chr6 115337121 115337936 -67077306 + L1ME2 LINE L1 5345 6156 -8 2614 36 0 12 chr6 115337951 115338281 -67076961 - LTR17 LTR ERV1 -454 326 1 13672 42 1 18 chr6 115338281 115340036 -67075206 - HERV17 LTR ERV1 0 8626 6902 * 39442 42 10 11 chr6 115340027 115345097 -67070145 - HERV17 LTR ERV1 -3559 5067 6 3687 72 44 0 chr6 115345126 115345629 -67069613 - LTR17 LTR ERV1 0 780 256 1485 226 99 46 chr6 115346121 115346167 -67069075 - L1M4c LINE L1 -4734 1912 1870 1512 180 48 0 chr6 115346167 115346439 -67068803 - AluJo SINE Alu -17 295 11 1485 226 99 46 chr6 115346439 115347017 -67068225 - L1M4c LINE L1 -4776 1870 1255 697 185 73 7 chr6 115347023 115347174 -67068068 + L1ME2 LINE L1 5831 5991 -173 3727 228 49 13 chr6 115347179 115348193 -67067049 - L1M4c LINE L1 -5283 1259 1 29 70 0 0 chr6 115348268 115348325 -67066917 + AT_rich Low_complexity Low_complexity 1 57 0 407 254 254 11 chr6 115348484 115348673 -67066569 + MIR SINE MIR 2 236 -26 2032 82 14 34 chr6 115348852 115349172 -67066070 - AluSp SINE Alu 0 314 1 238 291 0 0 chr6 115349646 115349701 -67065541 + L2 LINE L2 3003 3057 -215 280 365 94 29 chr6 115349796 115349966 -67065276 - MIR3 SINE MIR -9 199 19 904 267 32 28 chr6 115350840 115351091 -67064151 - MIR SINE MIR 0 262 11 1568 125 110 48 chr6 115351593 115351865 -67063377 + AluSg SINE Alu 1 289 -21 2186 125 0 0 chr6 115352050 115352362 -67062880 - AluJb SINE Alu 0 312 1 1659 189 85 3 chr6 115354045 115354363 -67060879 + MER2 DNA MER2_type 2 345 0 225 196 0 0 chr6 115354720 115354766 -67060476 + CT-rich Low_complexity Low_complexity 2 47 0 35 41 0 0 chr6 115356633 115356682 -67058560 + AT_rich Low_complexity Low_complexity 1 49 0 231 36 0 0 chr6 115356852 115356880 -67058362 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 762 170 82 14 chr6 115356880 115357027 -67058215 - FAM SINE Alu -28 157 1 4091 176 41 22 chr6 115357035 115358126 -67057116 - L1MB7 LINE L1 -52 6132 5022 22 0 0 0 chr6 115358303 115358325 -67056917 + AT_rich Low_complexity Low_complexity 1 22 0 333 245 80 71 chr6 115359894 115360093 -67055149 - MIR SINE MIR -36 226 28 2061 96 6 32 chr6 115361093 115361407 -67053835 - AluSx SINE Alu -6 306 1 2092 95 0 4 chr6 115362063 115362337 -67052905 - AluSg SINE Alu -37 273 1 802 246 31 48 chr6 115362894 115363122 -67052120 - MIR SINE MIR -10 252 29 427 237 197 20 chr6 115363719 115363871 -67051371 - MER5A DNA MER1_type -1 188 10 5613 169 34 23 chr6 115363902 115365153 -67050089 - L1MD2 LINE L1 -2 6357 5099 226 257 20 50 chr6 115365486 115365587 -67049655 + L1MC3 LINE L1 6571 6668 -1117 246 307 53 13 chr6 115365587 115365662 -67049580 - MIR SINE MIR -136 126 49 2196 98 0 0 chr6 115365668 115365954 -67049288 - AluSg SINE Alu -24 286 1 775 165 0 0 chr6 115366204 115366337 -67048905 - FLAM_C SINE Alu 0 143 11 1639 162 20 99 chr6 115367046 115367100 -67048142 - MLT1A1 LTR MaLR 0 365 308 1869 90 12 8 chr6 115367100 115367356 -67047886 - AluSq SINE Alu -13 300 44 1639 162 20 99 chr6 115367356 115367695 -67047547 - MLT1A1 LTR MaLR -57 308 3 703 156 67 0 chr6 115368219 115368354 -67046888 - L1MA4 LINE L1 -9 6291 6148 1784 153 48 58 chr6 115368899 115369278 -67045964 - THE1C LTR MaLR 0 375 1 2347 64 0 13 chr6 115369525 115369837 -67045405 - L1PA7 LINE L1 -3 6151 5844 892 168 147 5 chr6 115369970 115370161 -67045081 + AluJo SINE Alu 86 303 -9 194 222 111 14 chr6 115370331 115370403 -67044839 - MIR SINE MIR -70 192 114 565 238 72 140 chr6 115370609 115370802 -67044440 - L1MC4 LINE L1 -4 8038 7833 1970 133 0 7 chr6 115370802 115371103 -67044139 + AluSx SINE Alu 1 299 -13 565 238 72 140 chr6 115371103 115371594 -67043648 - L1MC4 LINE L1 -209 7833 7401 24 32 0 0 chr6 115371937 115371968 -67043274 + AT_rich Low_complexity Low_complexity 1 31 0 300 53 0 0 chr6 115372459 115372497 -67042745 + (CA)n Simple_repeat Simple_repeat 2 39 0 1587 160 62 19 chr6 115372538 115372863 -67042379 - MER2 DNA MER2_type -3 341 3 2213 80 7 20 chr6 115372988 115373288 -67041954 + AluY SINE Alu 1 296 -15 28 48 0 0 chr6 115373299 115373341 -67041901 + AT_rich Low_complexity Low_complexity 1 42 0 3011 222 73 31 chr6 115374100 115374978 -67040264 - L1ME1 LINE L1 -53 6113 5187 1950 143 3 0 chr6 115374978 115375271 -67039971 - AluSx SINE Alu -18 294 1 3011 222 73 31 chr6 115375271 115375354 -67039888 - L1ME1 LINE L1 -979 5187 5109 2214 149 52 28 chr6 115375912 115376334 -67038908 - MSTB1 LTR MaLR 0 432 1 606 241 9 0 chr6 115376410 115376526 -67038716 - FLAM_C SINE Alu -16 117 1 1793 135 4 0 chr6 115377029 115377289 -67037953 - AluSx SINE Alu -16 296 36 242 326 51 10 chr6 115377309 115377407 -67037835 - MIR3 SINE MIR -105 103 2 257 196 18 18 chr6 115377785 115377841 -67037401 + U6 snRNA snRNA 43 98 -9 216 0 0 0 chr6 115377933 115377957 -67037285 + (T)n Simple_repeat Simple_repeat 1 24 0 1813 114 8 0 chr6 115378978 115379240 -67036002 + AluSq SINE Alu 50 313 0 24 0 0 0 chr6 115380263 115380287 -67034955 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 115381736 115381766 -67033476 + AT_rich Low_complexity Low_complexity 1 30 0 246 287 133 21 chr6 115382113 115382256 -67032986 - MIR SINE MIR -32 230 72 292 275 87 74 chr6 115382535 115382684 -67032558 + MER5B DNA MER1_type 25 175 -3 241 290 187 19 chr6 115382701 115382808 -67032434 - MIR SINE MIR -62 146 22 754 197 72 81 chr6 115383147 115383283 -67031959 + L1MC4 LINE L1 7526 7662 -380 1043 188 173 59 chr6 115383283 115383607 -67031635 + MLT1A1 LTR MaLR 5 365 0 754 197 72 81 chr6 115383607 115383790 -67031452 + L1MC4 LINE L1 7662 7842 -200 1821 109 21 100 chr6 115384104 115384443 -67030799 - AluJb SINE Alu 0 312 1 281 307 0 27 chr6 115384696 115384771 -67030471 - L2 LINE L2 -16 3297 3225 26 50 0 0 chr6 115389251 115389291 -67025951 + AT_rich Low_complexity Low_complexity 1 40 0 229 191 0 0 chr6 115391296 115391338 -67023904 - MER103 DNA DNA -124 42 1 273 309 98 16 chr6 115391419 115391542 -67023700 - L3 LINE CR1 -266 1311 1179 2037 117 10 16 chr6 115392568 115392877 -67022365 - AluSg SINE Alu -3 307 1 2034 283 119 24 chr6 115393309 115394434 -67020808 + L2 LINE L2 1944 3175 -138 638 262 149 0 chr6 115394440 115394654 -67020588 - MIR SINE MIR -4 258 13 234 283 273 0 chr6 115394681 115394780 -67020462 + L2 LINE L2 3143 3268 -4 192 351 70 54 chr6 115394948 115395207 -67020035 - L2 LINE L2 -434 2880 2618 283 282 37 68 chr6 115395686 115395849 -67019393 - MER5B DNA MER1_type 0 178 21 370 339 89 40 chr6 115396016 115396168 -67019074 + L2 LINE L2 2550 2693 -621 2255 97 7 0 chr6 115396168 115396468 -67018774 - AluSc SINE Alu -7 302 1 370 339 89 40 chr6 115396468 115396719 -67018523 + L2 LINE L2 2693 2973 -341 774 193 32 21 chr6 115396800 115396987 -67018255 + MER53 DNA DNA 1 189 0 330 247 206 10 chr6 115397108 115397205 -67018037 + L2 LINE L2 3197 3312 -1 184 304 61 28 chr6 115397216 115397397 -67017845 - L2 LINE L2 -1036 2278 2092 1973 113 0 0 chr6 115397735 115398001 -67017241 + AluSq SINE Alu 43 308 -5 551 72 0 0 chr6 115398180 115398249 -67016993 - AluSc SINE Alu -22 287 219 1731 80 0 17 chr6 115398267 115398504 -67016738 - AluSg SINE Alu -77 233 1 765 148 0 37 chr6 115398824 115398959 -67016283 + FLAM_A SINE Alu 1 130 -3 2060 142 52 0 chr6 115399315 115399645 -67015597 - MER7A DNA MER2_type -1 345 1 228 67 0 0 chr6 115400004 115400034 -67015208 + (TC)n Simple_repeat Simple_repeat 1 30 0 275 293 32 24 chr6 115400141 115400264 -67014978 - L1MC4a LINE L1 -1884 5924 5801 573 262 32 0 chr6 115400798 115400924 -67014318 - L2 LINE L2 0 3313 3184 180 77 0 0 chr6 115400996 115401022 -67014220 + (TC)n Simple_repeat Simple_repeat 2 27 0 1788 159 0 7 chr6 115401242 115401537 -67013705 - AluJo SINE Alu -14 298 6 4060 175 97 28 chr6 115401542 115402190 -67013052 - L1MC3 LINE L1 -11 7774 7034 2314 123 26 0 chr6 115402190 115402541 -67012701 - MER46B DNA MER2_type -1 235 1 4060 175 97 28 chr6 115402541 115402867 -67012375 - L1MC3 LINE L1 -751 7034 6732 573 345 62 21 chr6 115402905 115403244 -67011998 - L2 LINE L2 0 3313 2961 352 229 212 24 chr6 115403254 115403424 -67011818 - MER112 DNA MER1_type -58 202 1 203 327 165 28 chr6 115403424 115403745 -67011497 - L2 LINE L2 -349 2965 2601 183 324 0 29 chr6 115403792 115403860 -67011382 + L2 LINE L2 3248 3313 0 1767 150 17 3 chr6 115404385 115404678 -67010564 + AluJb SINE Alu 1 297 -15 422 254 91 98 chr6 115405062 115405612 -67009630 - MLT1K LTR MaLR -23 565 20 314 172 159 62 chr6 115405688 115405793 -67009449 + MIR SINE MIR 42 154 -67 632 242 42 12 chr6 115406867 115406919 -67008323 + MIR SINE MIR 92 141 -121 225 65 0 0 chr6 115406919 115406950 -67008292 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1501 188 36 4 chr6 115406950 115407227 -67008015 + AluJo SINE Alu 1 286 -26 632 242 42 12 chr6 115407227 115407338 -67007904 + MIR SINE MIR 140 261 -1 1120 173 5 15 chr6 115407415 115407617 -67007625 - AluJb SINE Alu -112 200 1 2120 118 0 3 chr6 115408083 115408389 -67006853 - AluSq SINE Alu -8 305 1 28 29 0 0 chr6 115408592 115408627 -67006615 + AT_rich Low_complexity Low_complexity 1 35 0 1625 199 50 65 chr6 115410359 115410761 -67004481 + MSTD LTR MaLR 1 396 0 412 174 33 41 chr6 115411216 115411337 -67003905 + Charlie7 DNA MER1_type 40 159 -2453 275 229 48 0 chr6 115411353 115411436 -67003806 + Charlie7 DNA MER1_type 2510 2596 -16 1829 157 10 0 chr6 115411444 115411737 -67003505 + AluJo SINE Alu 1 296 -16 924 160 43 32 chr6 115411744 115411813 -67003429 + L1MEc LINE L1 34 101 -6295 243 0 0 0 chr6 115411813 115411840 -67003402 + (CA)n Simple_repeat Simple_repeat 2 28 0 924 160 43 32 chr6 115411840 115411957 -67003285 + L1MEc LINE L1 101 222 -6174 283 244 211 0 chr6 115412027 115412117 -67003125 + L2 LINE L2 3203 3311 -2 623 241 0 62 chr6 115412141 115412303 -67002939 - MIR3 SINE MIR 0 208 57 367 263 11 11 chr6 115413847 115413942 -67001300 - MIR SINE MIR -99 163 69 275 148 16 82 chr6 115414633 115414694 -67000548 + MLT1E3 LTR MaLR 1 57 -567 1031 237 32 16 chr6 115414793 115415042 -67000200 + MLT1E2 LTR MaLR 359 611 -15 1754 160 14 0 chr6 115415333 115415627 -66999615 + AluJo SINE Alu 1 298 -14 219 161 0 0 chr6 115416439 115416495 -66998747 + (CA)n Simple_repeat Simple_repeat 2 57 0 2041 108 13 10 chr6 115417583 115417889 -66997353 + AluSx SINE Alu 1 307 -5 233 252 87 70 chr6 115419141 115419256 -66995986 - MLT1K LTR MaLR -290 298 182 445 133 36 12 chr6 115419485 115419568 -66995674 + LTR54 LTR ERV1 396 480 -30 527 262 78 15 chr6 115419591 115419797 -66995445 + L1ME3A LINE L1 5732 5950 -220 2143 114 0 9 chr6 115419855 115420170 -66995072 + AluSx SINE Alu 1 312 0 355 280 129 38 chr6 115420188 115420374 -66994868 + L1ME3A LINE L1 5968 6170 0 1009 183 0 0 chr6 115420727 115420896 -66994346 + L1MB4 LINE L1 5573 5741 -439 2126 134 34 42 chr6 115420898 115421255 -66993987 - THE1B LTR MaLR -10 354 1 2897 62 5 3 chr6 115421255 115421623 -66993619 - THE1B-int LTR MaLR 0 1580 1212 552 151 0 0 chr6 115421622 115421708 -66993534 - THE1B-int LTR MaLR -1494 86 1 * 2203 138 30 28 chr6 115421708 115422071 -66993171 - THE1B LTR MaLR 0 364 1 1556 188 19 56 chr6 115422072 115422449 -66992793 + L1MB4 LINE L1 5738 6100 -80 1645 173 0 0 chr6 115422450 115422728 -66992514 - AluSx SINE Alu -32 280 3 1993 125 3 7 chr6 115422924 115423227 -66992015 + AluSg SINE Alu 1 302 -8 464 221 105 75 chr6 115423279 115423442 -66991800 + ORSL DNA AcHobo 1 177 -98 844 165 0 0 chr6 115423442 115423575 -66991667 - FLAM_C SINE Alu 0 133 1 464 221 105 75 chr6 115423575 115423678 -66991564 + ORSL DNA AcHobo 177 275 0 414 292 316 39 chr6 115423737 115424433 -66990809 - L3 LINE CR1 -27 1550 662 687 310 162 12 chr6 115425042 115425549 -66989693 + MLT1K LTR MaLR 2 584 -4 399 305 27 18 chr6 115426203 115426366 -66988876 + MIR SINE MIR 29 187 -63 232 163 0 0 chr6 115427060 115427103 -66988139 + (CACCAT)n Simple_repeat Simple_repeat 5 47 0 360 290 26 73 chr6 115428227 115428427 -66986815 - MIR SINE MIR -55 207 21 233 330 3 0 chr6 115428663 115428765 -66986477 - MIR SINE MIR -35 173 70 2053 108 24 0 chr6 115428976 115429264 -66985978 + AluSq SINE Alu 3 297 -16 234 0 0 0 chr6 115429287 115429313 -66985929 + (TA)n Simple_repeat Simple_repeat 1 26 0 679 268 160 5 chr6 115430404 115430617 -66984625 - MIR SINE MIR -4 258 13 300 285 62 31 chr6 115431450 115431580 -66983662 - MIR SINE MIR -75 187 54 505 326 114 13 chr6 115432254 115432490 -66982752 + MIR SINE MIR 3 262 0 1974 93 48 3 chr6 115432540 115432829 -66982413 - AluSg SINE Alu -8 302 1 3371 181 30 16 chr6 115433226 115433868 -66981374 + MER82 DNA MER2_type 3 653 0 292 206 9 9 chr6 115434219 115434232 -66981010 + (TA)n Simple_repeat Simple_repeat 2 14 -94 2174 100 0 7 chr6 115434232 115434533 -66980709 + AluSg SINE Alu 1 299 -11 292 206 9 9 chr6 115434533 115434626 -66980616 + (TA)n Simple_repeat Simple_repeat 13 108 0 225 163 0 0 chr6 115434627 115434670 -66980572 - L1MC4 LINE L1 -1339 6703 6661 432 233 209 51 chr6 115435479 115435771 -66979471 - L2 LINE L2 -25 3288 2951 299 281 201 7 chr6 115435899 115436038 -66979204 - MER117 DNA MER1_type -26 171 6 222 371 33 20 chr6 115436052 115436203 -66979039 - L2 LINE L2 -557 2757 2605 * 432 266 161 31 chr6 115436198 115436390 -66978852 - MIR SINE MIR -37 225 9 228 309 0 0 chr6 115436558 115436626 -66978616 + L1ME4a LINE L1 5959 6026 -95 61 0 0 0 chr6 115436691 115436752 -66978490 + AT_rich Low_complexity Low_complexity 1 61 0 2390 54 0 35 chr6 115436909 115437223 -66978019 - AluY SINE Alu -8 303 1 1977 91 58 0 chr6 115439712 115439988 -66975254 - AluSq SINE Alu -21 292 1 782 117 32 80 chr6 115439989 115440093 -66975149 + Charlie5 DNA MER1_type 2446 2539 -85 2188 88 0 10 chr6 115440093 115440398 -66974844 - AluSx SINE Alu -1 311 10 782 117 32 80 chr6 115440398 115440481 -66974761 + Charlie5 DNA MER1_type 2539 2624 0 335 273 125 8 chr6 115441440 115441568 -66973674 - L2 LINE L2 -2 3311 3169 1683 168 0 7 chr6 115442032 115442318 -66972924 - AluJo SINE Alu -28 284 1 207 0 0 0 chr6 115442511 115442534 -66972708 + (A)n Simple_repeat Simple_repeat 1 23 0 2064 94 50 3 chr6 115442686 115442984 -66972258 + AluSx SINE Alu 1 312 0 332 169 31 0 chr6 115443671 115443736 -66971506 + L1MC5 LINE L1 7831 7897 -64 21 0 0 0 chr6 115444893 115444914 -66970328 + AT_rich Low_complexity Low_complexity 1 21 0 2167 103 0 0 chr6 115444914 115445205 -66970037 - AluSx SINE Alu -21 291 1 2208 113 0 0 chr6 115445407 115445718 -66969524 - AluSq SINE Alu -2 311 1 2182 107 0 0 chr6 115446176 115446474 -66968768 - AluSx SINE Alu -14 298 1 1730 151 46 0 chr6 115447860 115448145 -66967097 - AluSx SINE Alu -14 298 1 21 0 0 0 chr6 115448150 115448171 -66967071 + AT_rich Low_complexity Low_complexity 1 21 0 564 246 86 32 chr6 115448634 115448821 -66966421 + MIR3 SINE MIR 9 205 -3 23 0 0 0 chr6 115449298 115449321 -66965921 + AT_rich Low_complexity Low_complexity 1 23 0 744 261 45 8 chr6 115449489 115449770 -66965472 - L1MC4a LINE L1 -326 5825 5666 373 299 95 0 chr6 115451470 115451607 -66963635 - MIR3 SINE MIR -29 179 30 2128 135 0 0 chr6 115451967 115452256 -66962986 - AluSx SINE Alu -23 289 1 204 280 56 63 chr6 115452609 115452752 -66962490 + L2 LINE L2 3172 3313 0 341 228 43 0 chr6 115453239 115453331 -66961911 + MIR SINE MIR 97 192 -70 775 200 54 11 chr6 115454737 115454922 -66960320 + L1MB2 LINE L1 5979 6171 0 1494 120 4 21 chr6 115455151 115455248 -66959994 - MER30 DNA MER1_type 0 230 133 2190 109 0 3 chr6 115455248 115455541 -66959701 - AluSg SINE Alu -18 292 1 1494 120 4 21 chr6 115455541 115455676 -66959566 - MER30 DNA MER1_type -97 133 2 227 343 28 9 chr6 115457483 115457591 -66957651 + MIR SINE MIR 37 146 -62 2383 91 0 0 chr6 115457723 115458020 -66957222 + AluSc SINE Alu 1 297 -12 246 176 0 0 chr6 115459556 115459607 -66955635 + A-rich Low_complexity Low_complexity 1 51 0 309 366 0 8 chr6 115459992 115460126 -66955116 - MIR SINE MIR -58 150 18 280 325 9 9 chr6 115460861 115460975 -66954267 - L3b LINE CR1 -220 1363 1250 414 0 0 0 chr6 115461838 115461884 -66953358 + (TC)n Simple_repeat Simple_repeat 1 46 0 270 0 0 0 chr6 115461883 115461913 -66953329 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 1884 161 7 3 chr6 115462932 115463242 -66952000 + AluJo SINE Alu 1 311 -1 204 40 0 0 chr6 115464649 115464674 -66950568 + (T)n Simple_repeat Simple_repeat 1 25 0 192 97 0 0 chr6 115465223 115465254 -66949988 + (A)n Simple_repeat Simple_repeat 1 31 0 263 71 24 0 chr6 115466046 115466088 -66949154 + (TA)n Simple_repeat Simple_repeat 2 44 0 267 256 58 58 chr6 115467550 115467706 -66947536 - MIR3 SINE MIR -3 205 50 2527 79 3 0 chr6 115469255 115469560 -66945682 + AluSp SINE Alu 1 306 -7 298 203 0 0 chr6 115471227 115471286 -66943956 + MIR SINE MIR 200 258 -4 389 235 17 17 chr6 115473243 115473362 -66941880 + L1MC4 LINE L1 7924 8042 0 21 0 0 0 chr6 115476635 115476656 -66938586 + AT_rich Low_complexity Low_complexity 1 21 0 2403 84 3 0 chr6 115477320 115477618 -66937624 + AluSc SINE Alu 1 299 -10 234 0 0 0 chr6 115478833 115478859 -66936383 + (TG)n Simple_repeat Simple_repeat 2 27 0 1899 139 4 0 chr6 115478864 115479144 -66936098 - AluJo SINE Alu -31 281 1 21 0 0 0 chr6 115480077 115480098 -66935144 + AT_rich Low_complexity Low_complexity 1 21 0 349 162 0 18 chr6 115481903 115481981 -66933261 - AluSp/q SINE Alu -2 301 240 2269 85 25 0 chr6 115481984 115482267 -66932975 - AluSq SINE Alu -22 291 2 1469 67 6 0 chr6 115482886 115483066 -66932176 - AluSq SINE Alu -132 181 1 1018 176 172 0 chr6 115483581 115483825 -66931417 + MLT1B LTR MaLR 1 286 -104 262 244 110 8 chr6 115484157 115484284 -66930958 + MIR SINE MIR 47 186 -76 328 193 34 34 chr6 115484486 115484574 -66930668 - MER5B DNA MER1_type -85 93 6 295 174 0 0 chr6 115485391 115485437 -66929805 - Alu SINE Alu -255 46 1 2170 148 76 69 chr6 115485449 115485961 -66929281 - MER4-int LTR ERV1 -4113 2485 1978 2298 69 38 3 chr6 115485961 115486250 -66928992 + AluSp SINE Alu 1 299 -14 2170 148 76 69 chr6 115486250 115486613 -66928629 - MER4-int LTR ERV1 -4620 1978 1399 1163 68 0 7 chr6 115486613 115486760 -66928482 - LTR10C LTR ERV1 0 591 446 227 301 62 26 chr6 115487762 115487875 -66927367 + MIR3 SINE MIR 5 121 -87 26 0 0 0 chr6 115488292 115488318 -66926924 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr6 115489940 115489963 -66925279 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr6 115491253 115491274 -66923968 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 115491491 115491512 -66923730 + GC_rich Low_complexity Low_complexity 1 21 0 210 128 0 0 chr6 115492720 115492759 -66922483 + (CA)n Simple_repeat Simple_repeat 1 39 0 25 31 0 0 chr6 115495500 115495532 -66919710 + AT_rich Low_complexity Low_complexity 1 32 0 198 143 0 0 chr6 115496458 115496493 -66918749 - MIR SINE MIR -62 146 112 2060 148 3 0 chr6 115498231 115498536 -66916706 - AluSx SINE Alu -6 306 1 480 246 128 6 chr6 115498543 115498722 -66916520 + L1MC5 LINE L1 7687 7887 -74 2310 74 0 14 chr6 115498787 115499072 -66916170 + AluSx SINE Alu 1 281 -31 276 30 0 0 chr6 115499075 115499108 -66916134 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2589 70 6 15 chr6 115699868 115700198 -66715044 - L1PA8A LINE L1 0 6131 5805 2464 81 3 0 chr6 115700771 115701068 -66714174 + AluSp SINE Alu 1 298 -15 402 243 155 50 chr6 115701158 115701397 -66713845 - L2 LINE L2 -4 3309 3046 1902 161 0 7 chr6 115701483 115701781 -66713461 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr6 115701781 115701804 -66713438 + AT_rich Low_complexity Low_complexity 1 23 0 207 221 21 116 chr6 115701856 115701951 -66713291 - MIR3 SINE MIR -22 186 101 1851 152 77 6 chr6 115701954 115702290 -66712952 + MSTB LTR MaLR 3 362 -64 893 186 6 41 chr6 115702290 115702462 -66712780 - FRAM SINE Alu -10 166 1 1384 178 14 0 chr6 115702484 115702703 -66712539 - AluJb SINE Alu -60 252 31 2138 133 3 0 chr6 115702723 115703025 -66712217 - AluSx SINE Alu -9 303 1 231 114 68 0 chr6 115703025 115703069 -66712173 + MSTB LTR MaLR 380 426 0 1140 144 8 111 chr6 115703248 115703491 -66711751 + AluJo SINE Alu 84 301 -11 698 312 64 67 chr6 115703803 115704133 -66711109 - L2 LINE L2 -18 3254 2926 2538 45 0 0 chr6 115704289 115704579 -66710663 - AluY SINE Alu -21 290 1 1003 155 34 80 chr6 115704924 115705005 -66710237 + L1MC1 LINE L1 6106 6189 -144 1813 180 3 3 chr6 115705005 115705300 -66709942 - AluJb SINE Alu -17 295 1 1003 155 34 80 chr6 115705300 115705457 -66709785 + L1MC1 LINE L1 6189 6333 0 253 345 95 36 chr6 115705979 115706147 -66709095 + MER5B DNA MER1_type 1 178 0 272 265 0 135 chr6 115706558 115706728 -66708514 - MER5B DNA MER1_type 0 178 32 539 281 35 50 chr6 115706859 115707058 -66708184 + L2 LINE L2 3113 3308 -5 432 253 87 52 chr6 115707497 115707726 -66707516 - L1MC4 LINE L1 -198 7844 7608 325 228 103 53 chr6 115707872 115708048 -66707194 - L1MC5 LINE L1 -398 7410 7249 2333 81 3 10 chr6 115708058 115708355 -66706887 + AluSx SINE Alu 1 295 -17 1985 168 0 3 chr6 115708587 115708890 -66706352 + AluJb SINE Alu 1 302 -10 2313 94 3 0 chr6 115708950 115709248 -66705994 - AluSx SINE Alu -13 299 1 3474 153 47 100 chr6 115709979 115710722 -66704520 + MER21B LTR ERV1 4 707 -156 993 164 18 6 chr6 115710723 115710894 -66704348 + FAM SINE Alu 1 48 -1 701 223 24 24 chr6 115710894 115711060 -66704182 + MER21B LTR ERV1 698 863 0 1854 167 10 3 chr6 115712062 115712183 -66703059 + AluJb SINE Alu 1 120 -192 366 23 0 0 chr6 115712183 115712226 -66703016 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1854 167 10 3 chr6 115712226 115712404 -66702838 + AluJb SINE Alu 120 302 -10 574 229 23 8 chr6 115712538 115712669 -66702573 - L2 LINE L2 -2 3311 3179 1790 155 7 14 chr6 115712705 115712983 -66702259 - AluJb SINE Alu -31 281 6 261 254 60 0 chr6 115713028 115713095 -66702147 + L2 LINE L2 3200 3270 -43 237 259 74 37 chr6 115713765 115713846 -66701396 + MER5A DNA MER1_type 5 88 -101 * 258 271 60 46 chr6 115713779 115713930 -66701312 - MER5B DNA MER1_type -14 164 12 1923 142 7 0 chr6 115714071 115714353 -66700889 - AluSx SINE Alu -28 284 1 216 0 0 0 chr6 115714779 115714803 -66700439 + (A)n Simple_repeat Simple_repeat 1 24 0 442 249 122 17 chr6 115715233 115715414 -66699828 - L1MC4 LINE L1 -34 8008 7809 1882 146 4 4 chr6 115715447 115715727 -66699515 - AluJo SINE Alu -32 280 1 287 25 25 0 chr6 115715771 115715811 -66699431 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2951 134 12 50 chr6 115717024 115717336 -66697906 - L1MB5 LINE L1 0 6174 5888 2249 94 0 0 chr6 115717336 115717623 -66697619 - AluSc SINE Alu -16 293 7 2951 134 12 50 chr6 115717623 115717826 -66697416 - L1MB5 LINE L1 -286 5888 5679 202 292 78 65 chr6 115717978 115718132 -66697110 + L2 LINE L2 2941 3096 -176 2239 94 0 14 chr6 115719463 115719760 -66695482 - AluSx SINE Alu -19 293 1 394 309 79 17 chr6 115719829 115719962 -66695280 - MIR3 SINE MIR -18 190 42 1496 123 55 5 chr6 115719962 115720181 -66695061 + MER30 DNA MER1_type 1 230 0 394 309 79 17 chr6 115720181 115720225 -66695017 - MIR3 SINE MIR -166 42 2 2357 85 0 0 chr6 115720385 115720680 -66694562 - AluY SINE Alu -16 295 1 2141 126 7 0 chr6 115720997 115721298 -66693944 - AluSx SINE Alu -9 303 1 21 0 0 0 chr6 115721298 115721319 -66693923 + AT_rich Low_complexity Low_complexity 1 21 0 2294 101 7 3 chr6 115721367 115721674 -66693568 - AluSq SINE Alu -5 308 1 2087 123 9 25 chr6 115721675 115721992 -66693250 - AluSx SINE Alu 0 312 1 615 114 11 0 chr6 115721998 115722086 -66693156 - AluSp/q SINE Alu -13 300 212 1279 110 0 0 chr6 115722086 115722249 -66692993 - AluSx SINE Alu -149 163 1 1115 272 68 67 chr6 115722253 115722912 -66692330 - HAL1 LINE L1 -1263 1244 585 180 0 0 0 chr6 115722951 115722971 -66692271 + (T)n Simple_repeat Simple_repeat 1 20 0 824 124 53 0 chr6 115722989 115723102 -66692140 - AluJb SINE Alu -189 123 5 1935 128 35 0 chr6 115724110 115724399 -66690843 + AluSx SINE Alu 1 299 -13 34 0 0 0 chr6 115724646 115724680 -66690562 + AT_rich Low_complexity Low_complexity 1 34 0 2483 69 0 16 chr6 115724838 115725141 -66690101 + AluSg SINE Alu 1 298 -12 1738 146 21 18 chr6 115726112 115726393 -66688849 + AluJo SINE Alu 1 282 -30 2010 148 0 3 chr6 115726407 115726697 -66688545 - AluJb SINE Alu -21 291 3 967 130 0 0 chr6 115726705 115726836 -66688406 - AluSq/x SINE Alu -180 133 3 2136 116 13 0 chr6 115726871 115727173 -66688069 + AluSg SINE Alu 5 310 0 24 0 0 0 chr6 115727268 115727292 -66687950 + AT_rich Low_complexity Low_complexity 1 24 0 1335 144 67 22 chr6 115727312 115727497 -66687745 - MER33 DNA MER1_type -2261 324 122 2309 35 46 3 chr6 115727497 115727779 -66687463 - AluY SINE Alu -17 294 1 1335 144 67 22 chr6 115727779 115727863 -66687379 - MER33 DNA MER1_type -2463 122 43 803 171 0 0 chr6 115728185 115728302 -66686940 - FLAM_A SINE Alu -22 120 4 482 251 107 133 chr6 115728534 115728634 -66686608 + L1MB8 LINE L1 3881 3982 -2164 948 198 0 6 chr6 115728634 115728796 -66686446 + FRAM SINE Alu 1 161 -5 482 251 107 133 chr6 115728796 115729243 -66685999 + L1MB8 LINE L1 3982 4439 -1707 1919 153 3 10 chr6 115729243 115729550 -66685692 + AluJb SINE Alu 1 305 -7 482 251 107 133 chr6 115729550 115729580 -66685662 + L1MB8 LINE L1 4439 4468 -1678 2190 115 3 6 chr6 115729580 115729893 -66685349 + AluSx SINE Alu 1 312 0 482 251 107 133 chr6 115729893 115730461 -66684781 + L1MB8 LINE L1 4468 4998 -1148 1480 218 104 0 chr6 115730596 115730922 -66684320 + MLT1D LTR MaLR 26 385 -120 431 281 108 11 chr6 115730968 115731153 -66684089 + L1MB8 LINE L1 5492 5694 -427 2657 179 13 17 chr6 115731153 115731616 -66683626 + MER65C LTR ERV1 1 461 0 767 244 131 64 chr6 115731621 115732068 -66683174 + L2 LINE L2 2662 3305 -8 2394 93 0 13 chr6 115732164 115732476 -66682766 + AluSq SINE Alu 1 308 -5 2290 104 3 0 chr6 115732676 115732975 -66682267 - AluSx SINE Alu -12 300 1 822 180 60 16 chr6 115733276 115733642 -66681600 + L1MB8 LINE L1 5769 6178 0 327 288 76 34 chr6 115733751 115733869 -66681373 - L2 LINE L2 0 3272 3150 189 182 0 0 chr6 115733876 115733931 -66681311 + (TA)n Simple_repeat Simple_repeat 2 56 0 2521 71 0 0 chr6 115734449 115734758 -66680484 + AluY SINE Alu 1 309 -2 284 354 35 14 chr6 115735705 115735761 -66679481 - MIR SINE MIR -82 180 127 2294 91 10 3 chr6 115735761 115736059 -66679183 + AluSx SINE Alu 1 300 -12 284 354 35 14 chr6 115736059 115736146 -66679096 - MIR SINE MIR -135 127 34 1334 199 0 78 chr6 115736212 115736339 -66678903 + AluJo SINE Alu 1 136 -176 1974 109 69 4 chr6 115736339 115736613 -66678629 - AluSg SINE Alu -14 296 5 1334 199 0 78 chr6 115736613 115736636 -66678606 + AluJo SINE Alu 136 159 -153 1787 159 0 17 chr6 115736636 115736949 -66678293 + AluSx SINE Alu 1 308 0 1334 199 0 78 chr6 115736949 115737103 -66678139 + AluJo SINE Alu 159 283 -29 1716 132 39 4 chr6 115737233 115737490 -66677752 + MER1B DNA MER1_type 1 266 -73 334 259 12 42 chr6 115737609 115737777 -66677465 + MLT1L LTR MaLR 18 268 -347 234 324 14 55 chr6 115738164 115738180 -66677062 - L1ME LINE L1 -460 5661 5646 2018 174 146 60 chr6 115738180 115738512 -66676730 - MLT1F LTR MaLR 0 542 240 285 51 0 0 chr6 115738512 115738551 -66676691 + (TA)n Simple_repeat Simple_repeat 2 40 0 2022 115 69 3 chr6 115738551 115738839 -66676403 - AluSg SINE Alu -3 307 1 2018 174 146 60 chr6 115738839 115739004 -66676238 - MLT1F LTR MaLR -301 241 1 234 324 14 55 chr6 115739004 115739132 -66676110 - L1ME LINE L1 -475 5646 5523 441 306 138 54 chr6 115739272 115739415 -66675827 - L2 LINE L2 -12 3301 3171 2429 61 0 14 chr6 115739415 115739712 -66675530 + AluY SINE Alu 1 293 -18 441 306 138 54 chr6 115739712 115740055 -66675187 - L2 LINE L2 -142 3171 2776 2355 86 0 10 chr6 115740057 115740359 -66674883 - AluSg SINE Alu -11 299 1 1941 123 41 17 chr6 115740374 115740667 -66674575 - AluSx SINE Alu -8 304 5 2344 98 10 0 chr6 115740667 115740974 -66674268 - AluSx SINE Alu -2 310 1 722 315 32 14 chr6 115741094 115741373 -66673869 - L2 LINE L2 -834 2480 2197 22 0 0 0 chr6 115741770 115741792 -66673450 + AT_rich Low_complexity Low_complexity 1 22 0 2225 88 0 3 chr6 115741800 115742139 -66673103 + AluSx SINE Alu 1 338 0 2243 103 7 7 chr6 115742561 115742871 -66672371 - AluSg SINE Alu 0 310 1 334 209 56 39 chr6 115743859 115744015 -66671227 - MLT1F1 LTR MaLR -3 587 422 263 110 14 137 chr6 115744010 115744083 -66671159 - MLT1H LTR MaLR -242 307 244 * 286 247 113 10 chr6 115744109 115744206 -66671036 - MLT1H LTR MaLR -393 156 50 534 155 10 29 chr6 115744212 115744315 -66670927 - MLT1F LTR MaLR -3 539 439 861 150 0 0 chr6 115744315 115744448 -66670794 + AluJb SINE Alu 1 133 -179 257 269 0 0 chr6 115744457 115744509 -66670733 - MLT1F LTR MaLR -92 450 399 2072 100 0 0 chr6 115745099 115745369 -66669873 + AluSq SINE Alu 32 301 -12 232 240 80 0 chr6 115745457 115745507 -66669735 + L2 LINE L2 3254 3307 -6 353 138 17 0 chr6 115745663 115745721 -66669521 - FRAM/FAM SINE Alu -76 90 32 1009 282 91 45 chr6 115745721 115746161 -66669081 + L2 LINE L2 2853 3312 -1 1547 159 99 18 chr6 115746222 115746505 -66668737 - AluJb SINE Alu -6 306 1 199 254 16 48 chr6 115746524 115746587 -66668655 + L2 LINE L2 2993 3053 -219 1789 171 0 19 chr6 115746918 115747233 -66668009 + AluJo SINE Alu 1 309 -3 881 162 0 22 chr6 115747274 115747410 -66667832 + FLAM_A SINE Alu 1 133 0 2334 103 3 0 chr6 115747582 115747893 -66667349 - AluSx SINE Alu 0 312 1 3618 246 42 17 chr6 115748307 115749253 -66665989 + L1MEc LINE L1 255 1224 -5383 387 288 125 27 chr6 115749261 115749556 -66665686 + L1MEc LINE L1 1333 1656 -4951 332 280 169 19 chr6 115749536 115749708 -66665534 + L1MEc LINE L1 1510 1896 -4711 * 1114 143 0 0 chr6 115749710 115749871 -66665371 + AluSg/x SINE Alu 137 297 -15 357 239 0 0 chr6 115749872 115749943 -66665299 + L1MEc LINE L1 1887 1957 -4650 237 313 71 9 chr6 115750068 115750180 -66665062 + L2 LINE L2 2941 3059 -213 1677 166 28 7 chr6 115750331 115750621 -66664621 - AluJo SINE Alu -16 296 1 226 0 0 0 chr6 115750624 115750649 -66664593 + (TTTA)n Simple_repeat Simple_repeat 4 172 0 2153 113 3 0 chr6 115750649 115750931 -66664311 - AluSq SINE Alu -1 307 1 1993 127 33 16 chr6 115751007 115751314 -66663928 + AluSx SINE Alu 1 312 0 2898 211 8 11 chr6 115751694 115752226 -66663016 - MER68 LTR ERV1 0 562 33 645 240 120 64 chr6 115752252 115752384 -66662858 + L1ME4a LINE L1 5611 5734 -387 2320 103 3 6 chr6 115752384 115752696 -66662546 + AluSx SINE Alu 1 311 -1 645 240 120 64 chr6 115752696 115753023 -66662219 + L1ME4a LINE L1 5734 6101 -20 2555 81 0 0 chr6 115753023 115753330 -66661912 - AluSx SINE Alu -5 307 1 645 240 120 64 chr6 115753330 115753352 -66661890 + L1ME4a LINE L1 6101 6120 -1 1418 215 29 4 chr6 115753514 115753788 -66661454 + AluJo SINE Alu 1 281 -31 * 2209 90 13 3 chr6 115753787 115754086 -66661156 - AluSx SINE Alu -10 302 1 28 0 0 0 chr6 115754099 115754127 -66661115 + AT_rich Low_complexity Low_complexity 1 28 0 1828 136 22 0 chr6 115754382 115754654 -66660588 + AluSx SINE Alu 25 302 -10 2552 65 3 0 chr6 115754724 115755034 -66660208 - AluY SINE Alu 0 311 1 2028 68 76 4 chr6 115755647 115755932 -66659310 - AluY SINE Alu 0 304 1 1499 162 52 11 chr6 115755943 115756215 -66659027 - AluJo SINE Alu -24 288 6 195 146 0 73 chr6 115756520 115756561 -66658681 + MIR SINE MIR 19 56 -152 738 144 115 0 chr6 115757096 115757235 -66658007 + LTR1 LTR ERV1 16 170 -615 2441 90 3 0 chr6 115757235 115757546 -66657696 + AluSp SINE Alu 1 312 -1 720 225 30 12 chr6 115757546 115757727 -66657515 + MIR SINE MIR 37 219 -43 243 0 0 0 chr6 115758807 115758834 -66656408 + (A)n Simple_repeat Simple_repeat 1 27 0 30 0 0 0 chr6 115759023 115759053 -66656189 + AT_rich Low_complexity Low_complexity 1 30 0 2145 91 0 63 chr6 115761108 115761426 -66653816 + AluSq SINE Alu 1 298 -15 444 270 25 87 chr6 115761919 115762115 -66653127 + MIR3 SINE MIR 19 202 -6 2368 92 0 0 chr6 115764248 115764542 -66650700 - AluSg SINE Alu -16 294 1 944 118 0 8 chr6 115766035 115766162 -66649080 + FLAM_C SINE Alu 1 126 -17 205 235 39 0 chr6 115766271 115766322 -66648920 - L2 LINE L2 -4 3268 3216 2275 87 3 10 chr6 115766424 115766724 -66648518 - AluSg SINE Alu -12 298 1 260 279 44 0 chr6 115766915 115766983 -66648259 + MIR SINE MIR 81 151 -57 747 186 0 8 chr6 115767274 115767392 -66647850 + FLAM_C SINE Alu 6 122 -21 2403 101 0 0 chr6 115767412 115767720 -66647522 - AluSg SINE Alu -2 308 1 24 32 0 0 chr6 115767721 115767752 -66647490 + AT_rich Low_complexity Low_complexity 1 31 0 1920 99 57 25 chr6 115768258 115768541 -66646701 - AluSg SINE Alu -18 292 1 2142 113 20 0 chr6 115768587 115768880 -66646362 - AluSq SINE Alu -14 299 1 956 60 0 0 chr6 115768897 115769013 -66646229 + AluSp/q SINE Alu 193 308 -5 260 261 0 58 chr6 115769014 115769083 -66646159 + MER112 DNA MER1_type 183 247 -13 2271 106 0 0 chr6 115769376 115769679 -66645563 - AluSx SINE Alu -9 303 1 793 180 8 0 chr6 115770135 115770263 -66644979 + FLAM_C SINE Alu 1 129 -4 2014 128 7 0 chr6 115770288 115770597 -66644645 + AluSx SINE Alu 1 311 0 1641 164 11 4 chr6 115770645 115770926 -66644316 + AluJo SINE Alu 1 283 -29 25 31 0 0 chr6 115770926 115770958 -66644284 + AT_rich Low_complexity Low_complexity 1 32 0 1695 188 24 0 chr6 115771012 115771305 -66643937 - AluSx SINE Alu -12 300 1 22 56 0 0 chr6 115771834 115771870 -66643372 + AT_rich Low_complexity Low_complexity 1 36 0 2324 86 10 3 chr6 115771909 115772201 -66643041 + AluSq SINE Alu 3 296 -17 569 229 286 26 chr6 115772363 115772555 -66642687 + MIR SINE MIR 21 262 0 2320 96 0 37 chr6 115772768 115773090 -66642152 + AluSx SINE Alu 1 310 -2 2498 60 3 0 chr6 115774046 115774347 -66640895 - AluY SINE Alu -9 302 1 2247 124 76 3 chr6 115774601 115774955 -66640287 + MSTA LTR MaLR 19 398 -30 2190 113 7 3 chr6 115774955 115775265 -66639977 - AluSq SINE Alu -2 311 1 2400 68 7 3 chr6 115775286 115775596 -66639646 - AluY SINE Alu 0 311 1 332 91 0 0 chr6 115775597 115775641 -66639601 + MSTA LTR MaLR 383 426 0 2251 121 0 3 chr6 115775879 115776186 -66639056 + AluY SINE Alu 1 306 -5 624 144 46 137 chr6 115776190 115776343 -66638899 + FLAM_C SINE Alu 2 140 -3 2089 110 24 3 chr6 115776560 115776850 -66638392 + AluSx SINE Alu 1 296 -16 2083 104 14 14 chr6 115779050 115779362 -66635880 + AluSq SINE Alu 1 313 0 1715 169 13 26 chr6 115780970 115781283 -66633959 - AluJo SINE Alu -3 309 1 21 57 0 0 chr6 115781334 115781369 -66633873 + AT_rich Low_complexity Low_complexity 1 35 0 756 269 0 0 chr6 115781503 115781652 -66633590 + MLT1J LTR MaLR 65 213 -298 275 180 80 0 chr6 115781659 115781709 -66633533 + MER94 DNA DNA 8 61 -73 1836 187 132 33 chr6 115782139 115782333 -66632909 + MER114 LTR ERV 42 215 -433 2037 104 64 0 chr6 115782333 115782613 -66632629 - AluSq SINE Alu -15 298 1 1836 187 132 33 chr6 115782613 115782725 -66632517 + MER114 LTR ERV 215 314 -334 408 20 0 0 chr6 115782725 115782774 -66632468 + (TG)n Simple_repeat Simple_repeat 1 49 0 1836 187 132 33 chr6 115782774 115783018 -66632224 + MER114 LTR ERV 314 648 0 180 0 0 0 chr6 115783051 115783071 -66632171 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2007 128 0 17 chr6 115783071 115783360 -66631882 - AluSx SINE Alu -24 288 5 2194 105 0 10 chr6 115783513 115783809 -66631433 - AluSq SINE Alu -20 293 1 1843 135 22 41 chr6 115785170 115785488 -66629754 + AluJb SINE Alu 1 312 0 797 230 114 36 chr6 115785787 115786031 -66629211 + MLT1J LTR MaLR 199 511 0 285 222 0 0 chr6 115786045 115786099 -66629143 + L1ME4a LINE L1 5555 5608 -513 1510 121 116 0 chr6 115786099 115786323 -66628919 + AluJo SINE Alu 1 250 -62 653 125 0 0 chr6 115786326 115786422 -66628820 - AluSg/x SINE Alu 0 310 215 2173 70 4 0 chr6 115786423 115786681 -66628561 - AluSx SINE Alu -53 259 1 1211 225 107 34 chr6 115786731 115787225 -66628017 + L1ME4a LINE L1 5592 6121 0 212 281 16 0 chr6 115787995 115788059 -66627183 - MIR SINE MIR -8 254 190 1952 164 0 0 chr6 115788065 115788369 -66626873 - AluJb SINE Alu -8 304 1 284 177 0 25 chr6 115788567 115788646 -66626596 + L1ME4a LINE L1 6043 6119 -2 254 298 85 0 chr6 115788666 115788783 -66626459 - MIR SINE MIR -64 144 60 231 116 70 0 chr6 115788852 115788895 -66626347 + MLT1H LTR MaLR 114 159 -390 * 247 200 0 0 chr6 115788865 115788905 -66626337 + MLT1I LTR MaLR 98 137 -272 305 203 0 29 chr6 115789010 115789079 -66626163 + MLT1H LTR MaLR 483 549 0 1716 185 16 19 chr6 115789228 115789541 -66625701 + AluJo SINE Alu 1 312 0 295 291 84 61 chr6 115790106 115790319 -66624923 + MLT1H LTR MaLR 114 331 -218 450 188 69 20 chr6 115790382 115790483 -66624759 + MLT1H LTR MaLR 443 548 -1 22 0 0 0 chr6 115790891 115790913 -66624329 + AT_rich Low_complexity Low_complexity 1 22 0 2047 107 0 24 chr6 115791079 115791412 -66623830 + AluSx SINE Alu 1 326 0 200 347 13 0 chr6 115792243 115792318 -66622924 - MIR SINE MIR -138 124 49 2253 102 3 0 chr6 115792359 115792653 -66622589 + AluSx SINE Alu 14 308 -4 205 320 120 33 chr6 115792897 115793047 -66622195 + MIR3 SINE MIR 38 200 -8 2200 113 0 7 chr6 115793478 115793770 -66621472 - AluSx SINE Alu -22 290 1 322 82 82 0 chr6 115794042 115794116 -66621126 + AluJ/FRAM SINE Alu 230 307 0 330 192 17 11 chr6 115794355 115794452 -66620790 + MLT1J LTR MaLR 70 267 -274 261 259 137 30 chr6 115794658 115794789 -66620453 + MLT1J LTR MaLR 330 474 -37 302 232 32 65 chr6 115794863 115795018 -66620224 - L1MC4a LINE L1 -1884 5924 5775 2062 131 0 0 chr6 115795304 115795614 -66619628 - AluSx SINE Alu 0 310 1 243 227 61 15 chr6 115795698 115795764 -66619478 - L3 LINE CR1 -7 1570 1502 1746 142 0 76 chr6 115795807 115795992 -66619250 - AluJo SINE Alu -18 294 141 2280 97 0 13 chr6 115795992 115796300 -66618942 + AluY SINE Alu 1 304 -7 1746 142 0 76 chr6 115796300 115796430 -66618812 - AluJo SINE Alu -171 141 3 1889 147 3 31 chr6 115796445 115796764 -66618478 + AluJo SINE Alu 1 310 -2 2180 106 3 0 chr6 115796849 115797155 -66618087 + AluSp SINE Alu 3 309 0 2026 128 30 7 chr6 115797159 115797464 -66617778 + AluSp SINE Alu 1 312 -1 21 0 0 0 chr6 115797464 115797485 -66617757 + AT_rich Low_complexity Low_complexity 1 21 0 412 251 72 67 chr6 115797690 115797787 -66617455 - L1MC5 LINE L1 -36 7925 7830 2330 90 0 0 chr6 115797787 115798087 -66617155 + AluSq SINE Alu 1 300 -13 412 251 72 67 chr6 115798087 115798184 -66617058 - L1MC5 LINE L1 -131 7830 7730 646 204 66 0 chr6 115798337 115798489 -66616753 - MIR SINE MIR -81 181 20 349 256 95 54 chr6 115798604 115798772 -66616470 + L1MC/D LINE L1 4602 4776 -1370 778 216 0 0 chr6 115798773 115798912 -66616330 + FLAM_C SINE Alu 2 140 -3 534 263 82 69 chr6 115798916 115799267 -66615975 + L1M1 LINE L1 4762 5107 -1176 2032 132 30 0 chr6 115799267 115799570 -66615672 + AluSq SINE Alu 1 312 -1 534 263 82 69 chr6 115799570 115799645 -66615597 + L1M1 LINE L1 5107 5180 -1103 2264 115 0 6 chr6 115799645 115799957 -66615285 + AluSx SINE Alu 1 310 -2 534 263 82 69 chr6 115799957 115800182 -66615060 + L1M1 LINE L1 5180 5432 -851 2309 88 13 3 chr6 115800182 115800487 -66614755 + AluSc SINE Alu 1 308 -1 534 263 82 69 chr6 115800487 115800598 -66614644 + L1M1 LINE L1 5432 5540 -743 255 275 66 11 chr6 115800787 115800878 -66614364 + L1MC/D LINE L1 5530 5625 -545 2269 120 3 0 chr6 115800939 115801239 -66614003 - AluSx SINE Alu -11 301 1 968 170 0 18 chr6 115801258 115801429 -66613813 + FRAM SINE Alu 1 161 -15 736 154 8 17 chr6 115801449 115801566 -66613676 - FLAM_C SINE Alu -24 119 4 230 180 0 20 chr6 115801598 115801648 -66613594 + L1MC/D LINE L1 5706 5754 -2054 356 214 102 10 chr6 115801731 115801829 -66613413 + L2 LINE L2 3207 3313 0 2420 61 3 26 chr6 115802172 115802485 -66612757 - AluSx SINE Alu -6 306 1 2413 100 0 0 chr6 115802509 115802820 -66612422 + AluSx SINE Alu 1 311 -1 1684 162 17 33 chr6 115802828 115803130 -66612112 + AluJb SINE Alu 1 297 -15 1003 155 106 53 chr6 115803280 115803487 -66611755 - AluJb SINE Alu -94 218 1 263 333 100 17 chr6 115803487 115803607 -66611635 - L3 LINE CR1 -114 1463 1334 956 241 63 53 chr6 115803831 115804339 -66610903 + L2 LINE L2 2713 3218 -95 1802 161 0 60 chr6 115804768 115805084 -66610158 - AluJo SINE Alu -15 297 1 897 118 0 29 chr6 115805150 115805286 -66609956 + FLAM_C SINE Alu 2 133 0 24 0 0 0 chr6 115807816 115807840 -66607402 + AT_rich Low_complexity Low_complexity 1 24 0 720 167 0 0 chr6 115807840 115807954 -66607288 - FLAM_A SINE Alu -18 124 11 470 324 112 0 chr6 115808046 115808225 -66607017 - MIR SINE MIR -27 235 37 2331 85 0 13 chr6 115808347 115808652 -66606590 - AluSx SINE Alu -11 301 1 524 214 48 0 chr6 115808658 115808784 -66606458 - Charlie4 DNA MER1_type -5 1956 1825 256 209 30 0 chr6 115808779 115808846 -66606396 - Charlie4 DNA MER1_type -1876 85 17 * 385 270 41 40 chr6 115808929 115809100 -66606142 - MIR SINE MIR -48 214 42 652 211 207 5 chr6 115809432 115809645 -66605597 + MLT1I LTR MaLR 147 402 -7 2300 88 0 3 chr6 115809866 115810185 -66605057 + AluSq SINE Alu 5 322 0 2228 85 3 3 chr6 115810803 115811098 -66604144 - AluSg SINE Alu -15 295 1 207 0 0 0 chr6 115811161 115811184 -66604058 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1973 122 7 0 chr6 115811184 115811462 -66603780 - AluSx SINE Alu -32 280 1 1518 164 80 60 chr6 115811655 115811991 -66603251 - MER2 DNA MER2_type -1 343 1 221 294 0 7 chr6 115811991 115812122 -66603120 + (TA)n Simple_repeat Simple_repeat 1 130 0 2036 155 3 19 chr6 115812278 115812594 -66602648 + AluJb SINE Alu 1 311 -1 5614 48 4 3 chr6 115812833 115813558 -66601684 + HERV17 LTR ERV1 6823 7548 -1078 2296 52 3 0 chr6 115813548 115813836 -66601406 + HERV17 LTR ERV1 8335 8623 -3 * 2158 94 6 12 chr6 115813838 115814166 -66601076 + LTR17 LTR ERV1 1 326 -454 259 308 0 0 chr6 115814198 115814263 -66600979 + (CATA)n Simple_repeat Simple_repeat 3 67 0 1652 112 154 0 chr6 115815104 115815364 -66599878 + AluSg SINE Alu 1 300 0 635 201 58 11 chr6 115815373 115815547 -66599695 + L1MB7 LINE L1 6003 6184 0 1806 172 24 10 chr6 115815695 115815986 -66599256 - AluJo SINE Alu -17 295 1 24 0 0 0 chr6 115816144 115816168 -66599074 + AT_rich Low_complexity Low_complexity 1 24 0 739 169 169 25 chr6 115816174 115816417 -66598825 + MER33 DNA MER1_type 11 288 -36 1238 202 154 26 chr6 115816420 115816771 -66598471 - MSTD LTR MaLR 0 396 1 604 285 65 16 chr6 115816978 115817287 -66597955 - L1ME4a LINE L1 -195 5926 5603 288 176 94 24 chr6 115817746 115817831 -66597411 + MER113 DNA MER1_type? 11 101 -420 902 269 40 8 chr6 115817882 115818131 -66597111 + MIR SINE MIR 6 262 0 204 337 81 12 chr6 115818473 115818559 -66596683 - MIR SINE MIR -92 116 25 415 279 66 22 chr6 115818881 115819017 -66596225 + MIR SINE MIR 48 189 -73 247 259 155 26 chr6 115819181 115819297 -66595945 - L2 LINE L2 0 3313 3183 286 301 59 52 chr6 115819350 115819486 -66595756 - MIR3 SINE MIR -21 187 51 2383 84 51 25 chr6 115819602 115819957 -66595285 + THE1B LTR MaLR 1 364 0 195 209 0 47 chr6 115821744 115821787 -66593455 - L2 LINE L2 -10 3303 3263 699 133 26 0 chr6 115823304 115823417 -66591825 - MLT1B LTR MaLR 0 390 275 2386 106 0 0 chr6 115823423 115823734 -66591508 + AluY SINE Alu 1 311 0 2245 173 66 28 chr6 115823734 115824277 -66590965 + LTR48 LTR ERV1 224 787 0 1942 129 0 4 chr6 115824338 115824601 -66590641 - AluSc SINE Alu -14 295 34 1916 147 3 42 chr6 115824614 115824927 -66590315 - AluJb SINE Alu -11 301 1 640 312 23 34 chr6 115825074 115825337 -66589905 + MIR SINE MIR 3 262 0 413 313 55 12 chr6 115825368 115825531 -66589711 - L2 LINE L2 -166 3106 2937 972 218 50 27 chr6 115825826 115826046 -66589196 + MIR SINE MIR 3 227 -35 480 299 95 35 chr6 115826203 115826434 -66588808 - MIR SINE MIR -6 256 12 2274 122 0 3 chr6 115826761 115827073 -66588169 - AluSx SINE Alu -1 311 1 1343 193 122 0 chr6 115827288 115827558 -66587684 + AluJo SINE Alu 1 303 -9 27 0 0 0 chr6 115828496 115828523 -66586719 + AT_rich Low_complexity Low_complexity 1 27 0 322 299 63 116 chr6 115828944 115829013 -66586229 - L2 LINE L2 -5 3267 3196 203 0 37 0 chr6 115829013 115829040 -66586202 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 322 299 63 116 chr6 115829040 115829238 -66586004 - L2 LINE L2 -76 3196 3014 2130 109 7 7 chr6 115832123 115832416 -66582826 + AluSx SINE Alu 1 293 -19 371 20 0 20 chr6 115832427 115832476 -66582766 + (CA)n Simple_repeat Simple_repeat 2 49 0 22 0 0 0 chr6 115832610 115832632 -66582610 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 115834099 115834120 -66581122 + AT_rich Low_complexity Low_complexity 1 21 0 314 343 127 5 chr6 115834339 115834552 -66580690 + MIR SINE MIR 20 258 -4 324 240 13 27 chr6 115834559 115834634 -66580608 + L2 LINE L2 3199 3272 0 263 341 57 32 chr6 115835246 115835492 -66579750 + L2 LINE L2 815 1066 -2248 1989 142 13 3 chr6 115835659 115835962 -66579280 + AluSx SINE Alu 1 306 -6 1656 140 86 7 chr6 115835984 115836263 -66578979 + AluJb SINE Alu 1 301 -11 451 310 69 0 chr6 115836874 115837019 -66578223 - MIR SINE MIR -107 155 1 293 268 0 0 chr6 115838724 115838795 -66576447 - Tigger5 DNA MER2_type 0 2323 2253 32 43 0 0 chr6 115838967 115839013 -66576229 + AT_rich Low_complexity Low_complexity 1 46 0 2283 110 3 25 chr6 115839512 115839831 -66575411 - AluSx SINE Alu 0 312 1 2095 132 3 0 chr6 115839992 115840287 -66574955 + AluSx SINE Alu 1 296 -16 1863 117 0 8 chr6 115840921 115841178 -66574064 - AluSg1 SINE Alu -54 255 1 607 234 269 0 chr6 115841578 115841753 -66573489 - MIR SINE MIR 0 262 41 278 208 83 28 chr6 115841776 115841848 -66573394 + MIR SINE MIR 66 141 -67 1018 92 8 0 chr6 115841866 115841997 -66573245 - AluSq/x SINE Alu -181 132 1 251 253 27 0 chr6 115842191 115842266 -66572976 - MER103 DNA DNA -88 78 2 186 271 93 56 chr6 115842335 115842442 -66572800 + MIR SINE MIR 20 130 -132 182 365 82 27 chr6 115842444 115842663 -66572579 + L2 LINE L2 2596 2826 -488 * 266 250 185 0 chr6 115842604 115842696 -66572546 - MIR SINE MIR 0 262 154 1215 183 33 17 chr6 115842887 115843128 -66572114 - MLT1B LTR MaLR -145 245 1 191 236 0 111 chr6 115843164 115843236 -66572006 - L2 LINE L2 0 3272 3209 1105 158 0 0 chr6 115843275 115843446 -66571796 + AluSg/x SINE Alu 134 304 -6 652 222 70 30 chr6 115843446 115843816 -66571426 - MLT1J2 LTR MaLR -12 438 2 291 355 89 8 chr6 115845048 115845172 -66570070 + MIR3 SINE MIR 12 145 -63 191 339 0 0 chr6 115845176 115845232 -66570010 - L2 LINE L2 0 3313 3258 1962 161 0 3 chr6 115845528 115845826 -66569416 - AluJo SINE Alu -15 297 1 189 350 136 6 chr6 115846083 115846260 -66568982 + MIR SINE MIR 52 251 -11 28 29 0 0 chr6 115846501 115846536 -66568706 + AT_rich Low_complexity Low_complexity 1 35 0 1887 179 0 3 chr6 115846954 115847256 -66567986 - AluJb SINE Alu -11 301 1 1462 167 42 63 chr6 115847947 115848265 -66566977 - AluJo SINE Alu 0 312 1 1605 175 16 29 chr6 115848293 115848602 -66566640 + AluJb SINE Alu 2 306 -6 1828 136 50 23 chr6 115849399 115849700 -66565542 + AluSx SINE Alu 1 309 -3 455 0 18 0 chr6 115850236 115850291 -66564951 + (TG)n Simple_repeat Simple_repeat 2 57 0 254 29 29 0 chr6 115850442 115850477 -66564765 + (CA)n Simple_repeat Simple_repeat 1 36 0 980 197 28 71 chr6 115850515 115850769 -66564473 - MIR SINE MIR -14 248 6 271 273 187 56 chr6 115850822 115851020 -66564222 + MIR SINE MIR 21 244 -18 187 31 62 0 chr6 115851570 115851602 -66563640 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 253 342 70 9 chr6 115851620 115851734 -66563508 + L3 LINE CR1 1023 1143 -434 200 362 97 65 chr6 115851799 115852233 -66563009 - L2 LINE L2 -8 3264 2817 * 262 310 214 46 chr6 115852202 115852292 -66562950 + L3 LINE CR1 1215 1289 -288 774 168 8 0 chr6 115852292 115852423 -66562819 - FLAM_C SINE Alu -1 132 1 262 310 214 46 chr6 115852423 115852635 -66562607 + L3 LINE CR1 1289 1568 -9 468 336 97 27 chr6 115852812 115853110 -66562132 - L2 LINE L2 0 3313 2995 21 36 0 0 chr6 115853573 115853601 -66561641 + AT_rich Low_complexity Low_complexity 1 28 0 697 274 153 50 chr6 115854460 115855014 -66560228 - L2 LINE L2 -620 2694 2084 481 230 115 77 chr6 115855249 115855458 -66559784 - MIR SINE MIR -27 235 19 22 0 0 0 chr6 115855585 115855607 -66559635 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 115855949 115855981 -66559261 + AT_rich Low_complexity Low_complexity 1 32 0 695 120 98 38 chr6 115856374 115856507 -66558735 - FLAM_C SINE Alu 0 143 3 362 202 185 34 chr6 115856737 115856856 -66558386 + MER112 DNA MER1_type 123 259 -1 387 215 95 38 chr6 115856997 115857155 -66558087 + L1ME4a LINE L1 5836 6002 -119 244 247 97 0 chr6 115859720 115859813 -66555429 - MIR SINE MIR -50 212 111 418 255 96 58 chr6 115859819 115860007 -66555235 + L2 LINE L2 3113 3307 -6 2010 81 48 55 chr6 115860653 115860962 -66554280 - AluSg SINE Alu -3 307 1 24 32 0 0 chr6 115861236 115861267 -66553975 + AT_rich Low_complexity Low_complexity 1 31 0 491 252 113 19 chr6 115861632 115861791 -66553451 - MIR SINE MIR -83 179 6 518 206 238 6 chr6 115862232 115862392 -66552850 - MIR SINE MIR -37 225 29 2231 214 74 45 chr6 115862414 115862550 -66552692 - L1MC4 LINE L1 -6 8036 7905 2490 51 0 3 chr6 115862550 115862843 -66552399 + AluY SINE Alu 1 292 -19 2231 214 74 45 chr6 115862843 115862866 -66552376 - L1MC4 LINE L1 -137 7905 7884 2209 98 0 0 chr6 115862866 115863182 -66552060 + AluSq SINE Alu 1 316 0 2231 214 74 45 chr6 115863182 115863713 -66551529 - L1MC4 LINE L1 -158 7884 7243 1601 165 38 34 chr6 115863928 115864219 -66551023 + AluJo SINE Alu 1 292 -20 651 170 108 80 chr6 115866089 115866301 -66548941 + MER20 DNA MER1_type 2 219 0 214 330 18 46 chr6 115866329 115866438 -66548804 + MIR SINE MIR 157 262 0 22 35 0 0 chr6 115868181 115868210 -66547032 + AT_rich Low_complexity Low_complexity 1 29 0 2127 93 41 14 chr6 115868326 115868617 -66546625 - AluSc SINE Alu -10 299 1 456 314 96 6 chr6 115869145 115869301 -66545941 + MER5B DNA MER1_type 2 171 -7 356 274 18 9 chr6 115871321 115871434 -66543808 - MIR3 SINE MIR -14 194 81 2192 138 29 0 chr6 115871493 115871842 -66543400 + MER46B DNA MER2_type 3 236 0 241 265 88 10 chr6 115873723 115873825 -66541417 + L1ME LINE L1 566 675 -5959 288 272 117 19 chr6 115874317 115874479 -66540763 + L1ME LINE L1 751 928 -5614 2018 247 83 19 chr6 115874501 115875281 -66539961 + L1ME LINE L1 879 1708 -4834 4085 126 15 127 chr6 115875289 115876842 -66538400 - pTR5 LTR ERV1 0 2606 1524 6008 227 101 107 chr6 115876843 115879422 -66535820 + L1ME LINE L1 1836 4429 -2215 2117 96 3 59 chr6 115879422 115879744 -66535498 + AluSq SINE Alu 1 304 -9 6008 227 101 107 chr6 115879744 115879910 -66535332 + L1ME LINE L1 4429 4595 -2049 2280 95 3 0 chr6 115879910 115880205 -66535037 + AluSc SINE Alu 1 296 -13 6008 227 101 107 chr6 115880205 115880493 -66534749 + L1ME LINE L1 4595 4883 -1761 280 185 84 14 chr6 115880493 115880731 -66534511 + AluJo SINE Alu 1 293 -9 6008 227 101 107 chr6 115880731 115881059 -66534183 + L1ME LINE L1 4883 5212 -1432 2249 115 0 6 chr6 115881059 115881371 -66533871 + AluSg SINE Alu 1 310 0 6008 227 101 107 chr6 115881371 115881495 -66533747 + L1ME LINE L1 5212 5569 -1075 513 228 94 34 chr6 115881495 115881644 -66533598 - MER20 DNA MER1_type -5 214 57 1505 186 41 7 chr6 115881645 115881935 -66533307 + AluJb SINE Alu 1 300 -12 2185 98 10 3 chr6 115882824 115883119 -66532123 + AluSg SINE Alu 1 297 -13 400 333 91 7 chr6 115883745 115883973 -66531269 - MIR SINE MIR -8 254 4 2488 50 7 3 chr6 115884368 115884671 -66530571 - AluY SINE Alu -7 304 1 2288 94 0 10 chr6 115884903 115885202 -66530040 - AluSc SINE Alu -11 298 3 2281 95 7 3 chr6 115885892 115886197 -66529045 + AluSx SINE Alu 1 306 -6 296 222 0 0 chr6 115886364 115886418 -66528824 - L2 LINE L2 -18 3254 3201 2768 222 125 33 chr6 115886845 115887894 -66527348 + L1MB7 LINE L1 2810 3954 -2192 7167 29 5 0 chr6 115887903 115888753 -66526489 - L1P2 LINE L1 -1213 4933 4080 4662 23 3 1 chr6 115888755 115889635 -66525607 + L1P2 LINE L1 4937 5818 -337 3170 44 0 3 chr6 115889735 115890124 -66525118 + L1PA3 LINE L1 5768 6155 0 31 0 0 0 chr6 115890124 115890155 -66525087 + AT_rich Low_complexity Low_complexity 1 31 0 1079 277 109 2 chr6 115890179 115890573 -66524669 + L1MB7 LINE L1 3960 4395 -1751 2028 132 14 0 chr6 115890580 115890869 -66524373 + AluSx SINE Alu 3 295 -17 1971 174 77 14 chr6 115890879 115891293 -66523949 - L1MC3 LINE L1 -370 7415 6976 369 285 76 50 chr6 115891310 115891706 -66523536 - L1MCb LINE L1 -3325 3239 2834 2948 227 100 16 chr6 115892108 115892939 -66522303 - L1MCb LINE L1 -5142 903 3 414 308 39 15 chr6 115893139 115893269 -66521973 + L2 LINE L2 3180 3312 -1 243 337 65 0 chr6 115894061 115894153 -66521089 - L2 LINE L2 -527 2787 2690 262 333 9 29 chr6 115894184 115894289 -66520953 + L2 LINE L2 3172 3274 -39 3705 173 96 34 chr6 115894514 115894629 -66520613 + L1MB7 LINE L1 4730 4836 -1348 1829 185 3 3 chr6 115894629 115894931 -66520311 + AluJb SINE Alu 1 302 -10 3705 173 96 34 chr6 115894931 115895094 -66520148 + L1MB7 LINE L1 4836 4987 -1197 2225 117 13 3 chr6 115895094 115895401 -66519841 + AluSx SINE Alu 1 310 -2 3705 173 96 34 chr6 115895401 115896433 -66518809 + L1MB7 LINE L1 4987 6110 -74 2388 98 0 6 chr6 115896433 115896748 -66518494 + AluSq SINE Alu 1 313 0 3705 173 96 34 chr6 115896748 115896821 -66518421 + L1MB7 LINE L1 6110 6177 -7 194 184 0 26 chr6 115897058 115897096 -66518146 + L2 LINE L2 3273 3309 -4 707 149 0 9 chr6 115897311 115897425 -66517817 + FLAM_A SINE Alu 20 132 -10 21 0 0 0 chr6 115897814 115897835 -66517407 + AT_rich Low_complexity Low_complexity 1 21 0 342 300 27 9 chr6 115898622 115898732 -66516510 - MIR3 SINE MIR -3 205 94 306 256 33 0 chr6 115900260 115900350 -66514892 + MER94 DNA DNA 7 99 -35 5451 189 78 41 chr6 115900350 115900522 -66514720 + L1MC4 LINE L1 5524 5688 -2307 2523 35 0 32 chr6 115900522 115900832 -66514410 - AluY SINE Alu -11 300 1 5451 189 78 41 chr6 115900832 115902218 -66513024 + L1MC4 LINE L1 5688 7446 -549 360 185 31 0 chr6 115902218 115902283 -66512959 + MLT1F1 LTR MaLR 58 124 -443 5451 189 78 41 chr6 115902283 115902848 -66512394 + L1MC4 LINE L1 7446 7989 -6 231 259 65 43 chr6 115903912 115904051 -66511191 - HAL1b LINE L1 -7 1341 1200 3773 261 92 22 chr6 115905059 115905819 -66509423 - L1MEc LINE L1 -2923 3292 2587 532 113 0 0 chr6 115905819 115905899 -66509343 - MADE1 DNA Mariner 0 80 1 3773 261 92 22 chr6 115905899 115906309 -66508933 - L1MEc LINE L1 -3628 2587 2207 2452 143 41 2 chr6 115906309 115906721 -66508521 - MSTA LTR MaLR 0 428 1 3773 261 92 22 chr6 115906721 115908650 -66506592 - L1MEc LINE L1 -4008 2207 25 1902 143 9 38 chr6 115908746 115909061 -66506181 - AluJo SINE Alu -1 311 6 5889 195 38 28 chr6 115909210 115910645 -66504597 + Charlie1a DNA MER1_type 2 1451 -4 463 278 250 6 chr6 115911137 115911317 -66503925 - MIR SINE MIR -27 235 12 921 300 52 65 chr6 115911909 115912646 -66502596 + L1PA15-16 LINE L1 1 727 -6122 275 326 53 15 chr6 115912786 115912918 -66502324 + L1M2 LINE L1 793 929 -5920 501 320 0 0 chr6 115913067 115913239 -66502003 + L1PA15-16 LINE L1 1388 1559 -5290 * 1831 224 70 24 chr6 115913229 115913936 -66501306 + L1PBb LINE L1 690 1420 -4784 1011 127 0 0 chr6 115913937 115914071 -66501171 + AluSg SINE Alu 1 134 -176 2108 125 3 3 chr6 115914071 115914398 -66500844 + AluSx SINE Alu 1 312 0 260 228 0 0 chr6 115914398 115914455 -66500787 + L1PBb LINE L1 1511 1567 -4636 327 58 115 0 chr6 115914457 115914509 -66500733 - THE1B LTR MaLR 0 364 307 183 205 0 0 chr6 115914509 115914548 -66500694 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 334 253 35 0 chr6 115914552 115914639 -66500603 - L1MC4 LINE L1 -1339 6703 6614 868 104 90 0 chr6 115914655 115914789 -66500453 - THE1C LTR MaLR -65 299 154 1039 103 35 15 chr6 115914830 115915000 -66500242 - THE1C LTR MaLR -226 149 1 9989 109 55 11 chr6 115915000 115916513 -66498729 - THE1B-int LTR MaLR 0 1580 1 2482 120 3 11 chr6 115916513 115916880 -66498362 - THE1B LTR MaLR 0 364 1 2805 210 18 31 chr6 115916890 115917640 -66497602 + L1M2 LINE L1 2132 2883 -3965 2771 7 0 0 chr6 115917640 115917941 -66497301 + AluYa5 SINE Alu 1 301 -10 2805 210 18 31 chr6 115917941 115918010 -66497232 + L1M2 LINE L1 2883 2951 -3897 657 155 0 9 chr6 115918014 115918130 -66497112 + L1PB4 LINE L1 6035 6149 -7 395 265 144 30 chr6 115918639 115918771 -66496471 - MIR3 SINE MIR -8 200 54 2214 142 47 2 chr6 115919125 115919534 -66495708 + L1MB4 LINE L1 5747 6173 -7 2057 122 0 3 chr6 115919786 115920073 -66495169 - AluSg SINE Alu -24 286 1 201 74 0 0 chr6 115920078 115920105 -66495137 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1941 124 62 7 chr6 115920114 115920387 -66494855 - AluSx SINE Alu -24 288 1 522 206 70 127 chr6 115920623 115920851 -66494391 - MER102a DNA MER1_type 0 330 116 246 146 329 0 chr6 115921744 115921826 -66493416 - MIR SINE MIR -5 257 149 269 351 153 17 chr6 115921829 115922182 -66493060 - L2 LINE L2 -80 3233 2833 247 213 0 0 chr6 115922493 115922540 -66492702 - L1MC4a LINE L1 -1870 5938 5892 1987 117 4 0 chr6 115922546 115922842 -66492400 - AluSx SINE Alu 0 317 21 2159 117 10 3 chr6 115922962 115923260 -66491982 - AluSx SINE Alu -12 300 1 906 202 97 97 chr6 115923347 115923592 -66491650 - L1MC4a LINE L1 -2174 5634 5390 1959 161 6 14 chr6 115923592 115923939 -66491303 - MER2 DNA MER2_type 0 344 1 2429 80 3 10 chr6 115923948 115924261 -66490981 - AluSq SINE Alu -1 312 2 906 202 97 97 chr6 115924261 115924308 -66490934 - L1MC4a LINE L1 -2426 5382 5329 2425 85 3 3 chr6 115924308 115924614 -66490628 - AluSx SINE Alu -6 306 1 906 202 97 97 chr6 115924614 115924641 -66490601 - L1MC4a LINE L1 -2478 5330 5304 561 312 137 26 chr6 115924714 115925248 -66489994 - L1MC4a LINE L1 -934 5212 4626 1476 181 35 4 chr6 115925334 115925593 -66489649 + AluJo SINE Alu 1 267 -45 1782 113 4 0 chr6 115925593 115925823 -66489419 - AluSx SINE Alu -65 247 17 309 319 125 6 chr6 115926079 115926239 -66489003 - L2 LINE L2 -1292 2022 1844 27 0 0 0 chr6 115927216 115927243 -66487999 + AT_rich Low_complexity Low_complexity 1 27 0 771 129 0 9 chr6 115929024 115929140 -66486102 + FLAM_C SINE Alu 4 118 -25 34 0 0 0 chr6 115929140 115929174 -66486068 + AT_rich Low_complexity Low_complexity 1 34 0 402 280 62 18 chr6 115929334 115929550 -66485692 + L1ME LINE L1 5445 5672 -449 2038 120 3 10 chr6 115929551 115929842 -66485400 + AluSx SINE Alu 1 289 -23 351 65 0 0 chr6 115929853 115929899 -66485343 + (CA)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr6 115930074 115930095 -66485147 + AT_rich Low_complexity Low_complexity 1 21 0 1939 173 110 58 chr6 115930154 115930564 -66484678 + MLT1D LTR MaLR 1 441 -64 2139 124 0 9 chr6 115930564 115930879 -66484363 + AluSx SINE Alu 1 312 0 1939 173 110 58 chr6 115930879 115930948 -66484294 + MLT1D LTR MaLR 441 505 0 423 204 83 99 chr6 115931063 115931244 -66483998 - MER5B DNA MER1_type 0 178 1 4076 213 45 28 chr6 115932447 115933882 -66481360 + L1MD2 LINE L1 4679 6146 -213 261 0 0 0 chr6 115933882 115933911 -66481331 + (CA)n Simple_repeat Simple_repeat 2 30 0 4076 213 45 28 chr6 115933911 115934128 -66481114 + L1MD2 LINE L1 6146 6358 -1 26 30 0 0 chr6 115934144 115934177 -66481065 + AT_rich Low_complexity Low_complexity 1 33 0 422 290 117 34 chr6 115934183 115934462 -66480780 + L1ME4a LINE L1 5239 5532 -589 488 281 94 3 chr6 115934500 115934788 -66480454 + L1ME4a LINE L1 5602 5915 -206 244 188 163 25 chr6 115934815 115934895 -66480347 + L1ME4a LINE L1 5984 6074 -47 28 48 0 0 chr6 115934907 115934949 -66480293 + AT_rich Low_complexity Low_complexity 1 42 0 1938 154 3 22 chr6 115936111 115936422 -66478820 - AluJb SINE Alu -7 305 1 2303 111 36 25 chr6 115936930 115937290 -66477952 + THE1B LTR MaLR 1 364 0 11234 96 28 7 chr6 115937290 115937769 -66477473 + THE1B-int LTR MaLR 1 469 -1111 2487 56 0 0 chr6 115937769 115938056 -66477186 + AluY SINE Alu 16 302 -9 11234 96 28 7 chr6 115938056 115939124 -66476118 + THE1B-int LTR MaLR 469 1580 0 2090 120 29 62 chr6 115939124 115939498 -66475744 + THE1B LTR MaLR 1 362 -2 200 361 133 25 chr6 115940273 115940431 -66474811 - L3b LINE CR1 -131 1452 1278 1498 193 10 45 chr6 115940620 115940910 -66474332 + AluJo SINE Alu 1 280 -32 404 262 90 14 chr6 115941027 115941172 -66474070 - Charlie8 DNA MER1_type -2135 282 127 215 320 39 39 chr6 115941176 115941279 -66473963 - L2 LINE L2 -190 3082 2980 2330 88 3 0 chr6 115941681 115941976 -66473266 + AluSp SINE Alu 5 300 -13 333 0 0 0 chr6 115941976 115942013 -66473229 + (TA)n Simple_repeat Simple_repeat 1 37 0 1982 166 0 0 chr6 115942292 115942593 -66472649 + AluSx SINE Alu 1 301 -11 2281 109 3 0 chr6 115942602 115942904 -66472338 + AluSq SINE Alu 1 303 -10 379 220 144 38 chr6 115943124 115943256 -66471986 - MIR SINE MIR -71 191 46 1912 164 13 0 chr6 115943324 115943623 -66471619 - AluJb SINE Alu -9 303 1 480 281 77 46 chr6 115943857 115944053 -66471189 - MIR SINE MIR -47 215 14 2034 119 71 50 chr6 115944431 115944583 -66470659 - L1MA5 LINE L1 0 6300 6153 1734 118 118 0 chr6 115944583 115944862 -66470380 + AluSx SINE Alu 1 312 0 2034 119 71 50 chr6 115944862 115945145 -66470097 - L1MA5 LINE L1 -147 6153 5856 5663 132 50 10 chr6 115945268 115946928 -66468314 + L1MA3 LINE L1 4545 6255 -50 183 205 0 0 chr6 115946929 115946968 -66468274 + (TA)n Simple_repeat Simple_repeat 1 39 0 245 136 0 0 chr6 115946976 115947020 -66468222 + L1MA1 LINE L1 6255 6298 -4 1572 213 0 7 chr6 115947069 115947356 -66467886 + AluJo SINE Alu 1 285 -27 450 0 0 0 chr6 115947356 115947406 -66467836 + (CA)n Simple_repeat Simple_repeat 2 51 0 22 0 0 0 chr6 115947519 115947541 -66467701 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr6 115948585 115948619 -66466623 + AT_rich Low_complexity Low_complexity 1 34 0 1827 88 29 0 chr6 115948672 115948944 -66466298 + L1MA5A LINE L1 6015 6294 -3 936 178 0 18 chr6 115949070 115949233 -66466009 - FRAM SINE Alu -11 165 6 2119 144 0 10 chr6 115949314 115949626 -66465616 + AluSx SINE Alu 1 309 -3 1006 192 54 58 chr6 115949630 115949870 -66465372 + MER8 DNA MER2_type 1 239 0 1952 134 19 38 chr6 115950276 115950589 -66464653 - AluSx SINE Alu -5 307 1 394 343 18 0 chr6 115950747 115950916 -66464326 + MERVL LTR ERVL 1861 2032 -2964 408 242 100 17 chr6 115951291 115951435 -66463807 + MERVL LTR ERVL 3285 3394 -2091 1152 311 61 20 chr6 115951479 115952546 -66462696 + MERVL LTR ERVL 3529 4675 -1089 453 235 93 6 chr6 115952603 115952765 -66462477 + MERVL LTR ERVL 4804 4979 -785 996 284 108 23 chr6 115953052 115953495 -66461747 - MLT1J LTR MaLR -30 481 1 2299 122 0 0 chr6 115954209 115954521 -66460721 + AluSx SINE Alu 1 312 0 200 389 56 15 chr6 115955245 115955443 -66459799 + L2 LINE L2 2614 2819 -495 536 226 51 0 chr6 115955481 115955618 -66459624 + L1ME1 LINE L1 5695 5838 -328 250 284 11 11 chr6 115955605 115955693 -66459549 - L1MEc LINE L1 -6269 127 40 * 1024 218 38 58 chr6 115956000 115956108 -66459134 - MIR SINE MIR -1 261 152 1780 182 3 10 chr6 115956108 115956405 -66458837 - AluJb SINE Alu -17 295 1 1024 218 38 58 chr6 115956405 115956557 -66458685 - MIR SINE MIR -110 152 6 45 19 0 0 chr6 115957227 115957279 -66457963 + AT_rich Low_complexity Low_complexity 1 52 0 1166 195 152 17 chr6 115957434 115957731 -66457511 - MER46C DNA MER2_type 0 338 2 513 275 20 7 chr6 115957851 115958000 -66457242 - MIR3 SINE MIR -39 169 19 219 191 0 0 chr6 115958001 115958064 -66457178 + CT-rich Low_complexity Low_complexity 2 64 0 2428 93 0 0 chr6 115958110 115958411 -66456831 + AluSc SINE Alu 1 301 -8 496 239 85 45 chr6 115958411 115958612 -66456630 - L1MD2 LINE L1 -30 6329 6121 1943 123 96 21 chr6 115958613 115958947 -66456295 - THE1C LTR MaLR 0 375 17 10521 106 29 19 chr6 115958947 115959126 -66456116 - THE1C-int LTR MaLR 0 1580 1404 2448 63 7 10 chr6 115959126 115959429 -66455813 + AluY SINE Alu 1 302 -9 10521 106 29 19 chr6 115959429 115960810 -66454432 - THE1C-int LTR MaLR -176 1404 4 1600 141 159 21 chr6 115960810 115961134 -66454108 - THE1C LTR MaLR -3 372 1 737 206 101 76 chr6 115961134 115961365 -66453877 - L1MD2 LINE L1 -235 6124 5883 1803 110 40 23 chr6 115961365 115961665 -66453577 - L1MB2 LINE L1 -7 6164 5860 737 206 101 76 chr6 115961665 115961709 -66453533 - L1MD2 LINE L1 -476 5883 5842 1158 175 31 48 chr6 115961717 115961945 -66453297 - AluJo SINE Alu -88 224 1 1592 126 4 0 chr6 115961947 115962185 -66453057 - L1MB2 LINE L1 -346 5825 5587 864 152 63 6 chr6 115962185 115962343 -66452899 - L1MD2 LINE L1 -465 5894 5728 1294 192 16 110 chr6 115962745 115962921 -66452321 - L1M2 LINE L1 -551 5746 5619 1894 158 0 3 chr6 115962921 115963206 -66452036 - AluJb SINE Alu -28 284 1 1294 192 16 110 chr6 115963206 115963374 -66451868 - L1M2 LINE L1 -678 5619 5437 3155 127 48 71 chr6 115963374 115963980 -66451262 + LTR14B LTR ERVK 17 608 0 539 128 0 4 chr6 115963980 115964073 -66451169 - L1MD2 LINE L1 -727 5442 5350 940 175 0 45 chr6 115964085 115964262 -66450980 - FRAM SINE Alu -2 174 6 946 199 30 77 chr6 115964263 115964316 -66450926 - L1MD2 LINE L1 -820 5326 5272 2033 121 24 0 chr6 115964316 115964606 -66450636 - AluSq SINE Alu -16 297 1 946 199 30 77 chr6 115964606 115964744 -66450498 - L1MD2 LINE L1 -874 5272 5161 2404 85 0 0 chr6 115964744 115965039 -66450203 - AluSg SINE Alu -15 295 1 946 199 30 77 chr6 115965039 115965147 -66450095 - L1MD2 LINE L1 -985 5161 5049 843 131 8 0 chr6 115965147 115965269 -66449973 - AluSg/x SINE Alu -15 294 172 445 145 0 0 chr6 115965269 115965338 -66449904 - AluS SINE Alu -243 70 2 1351 204 19 94 chr6 115965341 115965767 -66449475 - L1MD2 LINE L1 -1084 5062 4669 1904 172 3 3 chr6 115966119 115966422 -66448820 - AluJb SINE Alu -9 303 1 345 111 0 0 chr6 115966826 115966880 -66448362 + Alu SINE Alu 247 300 0 2244 110 0 7 chr6 115967548 115967858 -66447384 + AluSc SINE Alu 1 308 -1 717 221 144 25 chr6 115967879 115968115 -66447127 + L1ME2 LINE L1 5492 5786 -384 2265 109 7 0 chr6 115968115 115968417 -66446825 + AluSq SINE Alu 1 304 -9 717 221 144 25 chr6 115968417 115968534 -66446708 + L1ME2 LINE L1 5786 5888 -282 1580 164 55 4 chr6 115968639 115968914 -66446328 - AluJb SINE Alu -21 291 3 1166 198 45 0 chr6 115969244 115969491 -66445751 + L1MD1 LINE L1 5985 6242 0 1018 164 80 0 chr6 115969521 115969722 -66445520 - MER20 DNA MER1_type -2 217 1 1161 239 27 27 chr6 115969727 115970061 -66445181 + L1MC4 LINE L1 7572 7905 -137 267 247 12 12 chr6 115970067 115970148 -66445094 + (TA)n Simple_repeat Simple_repeat 2 82 0 1509 39 0 22 chr6 115970278 115970456 -66444786 + AluY SINE Alu 1 174 -137 372 20 0 0 chr6 115970458 115970507 -66444735 + AluY SINE Alu 253 301 0 602 260 87 6 chr6 115972400 115972573 -66442669 - MIR SINE MIR -60 202 16 2228 110 3 0 chr6 115972832 115973131 -66442111 - AluSx SINE Alu -2 310 11 1054 175 9 52 chr6 115974128 115974339 -66440903 - MER20 DNA MER1_type 0 219 18 1595 220 96 23 chr6 115974889 115975326 -66439916 + L1MC4a LINE L1 5463 5931 -1877 410 272 128 43 chr6 115975358 115975663 -66439579 + L1MC4a LINE L1 6052 6382 -1426 289 298 12 12 chr6 115975876 115975960 -66439282 + L1MC4a LINE L1 6613 6690 -1118 1162 156 0 0 chr6 115975962 115976135 -66439107 - AluSx SINE Alu -8 302 130 300 37 56 0 chr6 115976135 115976189 -66439053 + (TA)n Simple_repeat Simple_repeat 1 57 0 288 159 71 35 chr6 115976190 115976303 -66438939 + Charlie4 DNA MER1_type 1789 1905 -56 22 0 0 0 chr6 115976418 115976440 -66438802 + AT_rich Low_complexity Low_complexity 1 22 0 7801 21 0 4 chr6 115976440 115977462 -66437780 - L1PA4 LINE L1 -3 6152 5128 1089 98 0 0 chr6 115977462 115977594 -66437648 - AluSx SINE Alu -181 132 1 749 246 119 71 chr6 115977609 115977963 -66437279 + L1MC4 LINE L1 6710 7080 -881 457 231 65 47 chr6 115977968 115978137 -66437105 - LTR16C LTR ERVL 0 491 320 492 183 14 56 chr6 115978469 115978611 -66436631 + L1MC5 LINE L1 7083 7218 -743 835 271 78 57 chr6 115978629 115979255 -66435987 + L1MC5 LINE L1 7246 7802 -159 25 51 0 0 chr6 115979508 115979547 -66435695 + AT_rich Low_complexity Low_complexity 1 39 0 923 272 165 31 chr6 115979561 115980056 -66435186 - L1ME3A LINE L1 -231 5939 5381 271 343 89 0 chr6 115980501 115980647 -66434595 + MIR3 SINE MIR 47 205 -3 806 154 16 0 chr6 115980764 115980887 -66434355 + AluJb SINE Alu 1 125 -187 279 0 0 0 chr6 115980892 115980923 -66434319 + (CA)n Simple_repeat Simple_repeat 2 32 0 266 267 0 44 chr6 115980959 115981049 -66434193 + L2 LINE L2 3228 3313 0 336 208 125 10 chr6 115981246 115981342 -66433900 - MER5B DNA MER1_type -70 108 2 209 238 12 25 chr6 115981369 115981449 -66433793 + CT-rich Low_complexity Low_complexity 4 82 0 2454 83 3 6 chr6 115982036 115982349 -66432893 + AluSp SINE Alu 1 312 -1 529 294 91 5 chr6 115982904 115983091 -66432151 + MIR SINE MIR 35 237 -25 1125 47 0 0 chr6 115983185 115983312 -66431930 - AluY SINE Alu -184 127 1 1376 118 0 10 chr6 115983574 115983769 -66431473 + AluSg/x SINE Alu 109 301 -11 435 225 194 49 chr6 115983951 115984175 -66431067 - L1MC5 LINE L1 -30 7931 7642 2013 120 4 0 chr6 115984175 115984451 -66430791 + AluSx SINE Alu 17 293 -19 435 225 194 49 chr6 115984451 115984555 -66430687 - L1MC5 LINE L1 -319 7642 7555 495 261 43 43 chr6 115985509 115985670 -66429572 + MIR SINE MIR 7 167 -95 353 280 30 65 chr6 115985753 115985921 -66429321 + MLT1H LTR MaLR 147 308 -241 371 194 39 139 chr6 115985985 115986114 -66429128 + MLT1H LTR MaLR 434 549 0 267 277 21 0 chr6 115986114 115986208 -66429034 + MIR SINE MIR 167 262 0 365 221 0 0 chr6 115986926 115986994 -66428248 + HsTC2 DNA Tc2 1 68 -1830 273 194 0 104 chr6 115986988 115987055 -66428187 - AluJb SINE Alu -129 173 114 * 2014 156 0 0 chr6 115987360 115987655 -66427587 + AluJb SINE Alu 1 295 -17 256 333 49 44 chr6 115987720 115987945 -66427297 + L2 LINE L2 2811 3036 -236 1863 169 6 13 chr6 115987994 115988307 -66426935 - AluJb SINE Alu -1 311 1 803 172 0 0 chr6 115988412 115988540 -66426702 + FRAM SINE Alu 31 158 -18 1915 176 0 0 chr6 115989278 115989573 -66425669 + AluJb SINE Alu 1 295 -17 548 210 0 0 chr6 115989683 115989783 -66425459 - FRAM SINE Alu -46 130 31 1788 172 6 16 chr6 115989895 115990209 -66425033 + AluJb SINE Alu 1 311 -1 255 342 21 37 chr6 115990258 115990445 -66424797 - L2 LINE L2 -236 3036 2853 240 143 0 0 chr6 115990544 115990586 -66424656 + (TTTTC)n Simple_repeat Simple_repeat 1 42 0 271 229 16 0 chr6 115990748 115990809 -66424433 + LTR67 LTR ERVL 495 556 -1 656 296 19 19 chr6 115990842 115991058 -66424184 + MIR SINE MIR 47 262 0 233 264 88 11 chr6 115992038 115992129 -66423113 + MIR SINE MIR 117 214 -48 21 0 0 0 chr6 115992483 115992504 -66422738 + AT_rich Low_complexity Low_complexity 1 21 0 538 44 0 0 chr6 115993422 115993490 -66421752 + MER41A LTR ERV1 400 467 -87 2357 86 3 7 chr6 115993592 115993896 -66421346 + AluY SINE Alu 1 303 -8 1845 140 0 39 chr6 115993943 115994250 -66420992 - AluJo SINE Alu 0 312 18 389 153 97 0 chr6 115994472 115994544 -66420698 + MER89 LTR ERV1 1 79 -480 291 213 80 13 chr6 115994552 115994627 -66420615 + MER89 LTR ERV1 186 265 -294 1391 104 15 161 chr6 115994667 115994936 -66420306 + MER89 LTR ERV1 273 485 -74 1805 28 5 0 chr6 115994936 115995147 -66420095 + L1PA3 LINE L1 5941 6152 -3 1391 104 15 161 chr6 115995147 115995213 -66420029 + MER89 LTR ERV1 485 559 0 2012 142 3 10 chr6 115995890 115996200 -66419042 - AluSx SINE Alu -4 308 1 798 319 116 18 chr6 115996437 115996945 -66418297 + L2 LINE L2 2761 3313 0 42 0 0 0 chr6 115997245 115997287 -66417955 + AT_rich Low_complexity Low_complexity 1 42 0 459 310 15 26 chr6 115997332 115997540 -66417702 + MLT1I LTR MaLR 1 208 -201 2246 100 7 3 chr6 115997739 115998048 -66417194 + AluY SINE Alu 2 311 0 457 231 67 8 chr6 115998049 115998183 -66417059 - MER104 DNA Tc2 -38 142 1 405 252 68 44 chr6 115998214 115998284 -66416958 + MIR SINE MIR 10 77 -185 2191 123 0 3 chr6 115998284 115998585 -66416657 - AluSx SINE Alu -12 300 1 405 252 68 44 chr6 115998585 115998720 -66416522 + MIR SINE MIR 77 220 -42 21 0 0 0 chr6 116001540 116001561 -66413681 + GC_rich Low_complexity Low_complexity 1 21 0 30 89 0 0 chr6 116001899 116001978 -66413264 + GC_rich Low_complexity Low_complexity 1 79 0 285 274 9 19 chr6 116002069 116002175 -66413067 + C-rich Low_complexity Low_complexity 1 105 0 531 182 0 0 chr6 116002340 116002461 -66412781 + (CGG)n Simple_repeat Simple_repeat 1 121 0 249 238 0 0 chr6 116002574 116002654 -66412588 + (CCA)n Simple_repeat Simple_repeat 2 81 0 884 253 155 30 chr6 116009530 116010064 -66405178 - L1ME4a LINE L1 -2 6119 5519 233 313 122 9 chr6 116010162 116010277 -66404965 - L2 LINE L2 -9 3304 3177 204 250 29 15 chr6 116011431 116011499 -66403743 + MIR SINE MIR 154 222 -40 1909 142 41 0 chr6 116012198 116012493 -66402749 + AluSx SINE Alu 4 310 -2 28 0 0 26 chr6 116012593 116012613 -66402629 + AT_rich Low_complexity Low_complexity 1 21 -17 2449 54 0 14 chr6 116012613 116012910 -66402332 - AluY SINE Alu -18 293 1 28 0 0 26 chr6 116012910 116012928 -66402314 + AT_rich Low_complexity Low_complexity 21 38 0 2062 128 3 0 chr6 116014857 116015145 -66400097 - AluSx SINE Alu -23 289 1 26 30 0 0 chr6 116017157 116017190 -66398052 + AT_rich Low_complexity Low_complexity 1 33 0 2192 126 3 3 chr6 116017399 116017708 -66397534 - AluSx SINE Alu -3 309 1 2159 116 0 0 chr6 116017716 116018036 -66397206 - AluSx SINE Alu 0 320 1 2132 80 0 35 chr6 116018879 116019166 -66396076 + AluSq SINE Alu 21 297 -16 1022 65 33 87 chr6 116019332 116019394 -66395848 - MER30 DNA MER1_type -56 174 110 2283 101 0 0 chr6 116019394 116019691 -66395551 - AluSq SINE Alu -16 297 1 1022 65 33 87 chr6 116019691 116019812 -66395430 - MER30 DNA MER1_type -120 110 1 2256 85 0 0 chr6 116020399 116020682 -66394560 + AluSx SINE Alu 18 300 -12 785 246 30 55 chr6 116021001 116021198 -66394044 + MIR SINE MIR 3 195 -67 2541 64 3 3 chr6 116021198 116021511 -66393731 + AluSp SINE Alu 1 313 0 785 246 30 55 chr6 116021511 116021549 -66393693 + MIR SINE MIR 195 232 -30 189 343 134 8 chr6 116021752 116021886 -66393356 - L2 LINE L2 -1078 2236 2086 1150 185 28 0 chr6 116022150 116022361 -66392881 - MER58A DNA MER1_type 0 224 8 405 302 76 41 chr6 116023104 116023276 -66391966 - MIR SINE MIR -56 206 30 26 0 0 0 chr6 116024814 116024840 -66390402 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr6 116025726 116025755 -66389487 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr6 116025810 116025836 -66389406 + (A)n Simple_repeat Simple_repeat 1 26 0 840 250 33 0 chr6 116025990 116026170 -66389072 - MIR SINE MIR -71 191 6 604 281 35 12 chr6 116026671 116026842 -66388400 + MIR3 SINE MIR 2 176 -32 2172 280 62 53 chr6 116027239 116027554 -66387688 + L1ME LINE L1 3422 3733 -2413 2048 146 7 0 chr6 116027554 116027855 -66387387 + AluSx SINE Alu 3 305 -7 2172 280 62 53 chr6 116027855 116028265 -66386977 + L1ME LINE L1 3733 4138 -2008 1783 179 0 49 chr6 116028265 116028590 -66386652 + AluSx SINE Alu 1 309 -3 2172 280 62 53 chr6 116028590 116029317 -66385925 + L1ME LINE L1 4138 4896 -1250 1834 191 13 34 chr6 116029317 116029695 -66385547 - MLT1A2 LTR MaLR -4 370 1 2172 280 62 53 chr6 116029695 116029983 -66385259 + L1ME LINE L1 4896 5180 -966 441 305 0 0 chr6 116029992 116030120 -66385122 + L1PB4 LINE L1 6029 6156 0 1560 234 31 60 chr6 116030131 116030725 -66384517 + L1ME LINE L1 5186 5759 -411 1124 164 48 5 chr6 116031251 116031458 -66383784 + MER20 DNA MER1_type 1 216 -3 397 318 46 25 chr6 116031766 116032005 -66383237 + LTR16C LTR ERVL 238 481 -10 575 263 51 13 chr6 116032386 116032542 -66382700 - MIR3 SINE MIR -7 201 40 1124 164 48 5 chr6 116033025 116033232 -66382010 - MER20 DNA MER1_type -3 216 1 535 226 15 8 chr6 116033687 116033820 -66381422 - L1ME LINE L1 -405 5757 5624 340 330 131 38 chr6 116033926 116033995 -66381247 - L2 LINE L2 -73 3199 3138 459 0 0 0 chr6 116033995 116034046 -66381196 + (CA)n Simple_repeat Simple_repeat 2 52 0 340 330 131 38 chr6 116034046 116034267 -66380975 - L2 LINE L2 -134 3138 2882 317 180 33 16 chr6 116034541 116034602 -66380640 + L2 LINE L2 3252 3313 0 1872 167 0 7 chr6 116034623 116034929 -66380313 - AluJb SINE Alu -8 304 1 215 279 0 63 chr6 116035960 116036039 -66379203 + L2 LINE L2 3160 3233 -39 318 259 70 28 chr6 116036991 116037134 -66378108 - MER103 DNA DNA -15 151 3 198 264 118 64 chr6 116037817 116037927 -66377315 - L2 LINE L2 0 3313 3198 2159 115 3 16 chr6 116038033 116038337 -66376905 - AluSq SINE Alu -13 300 1 562 276 22 32 chr6 116040901 116041086 -66374156 + MIR SINE MIR 9 191 -71 225 296 49 0 chr6 116041743 116041824 -66373418 - L3b LINE CR1 -93 1490 1406 29 0 0 0 chr6 116043693 116043722 -66371520 + AT_rich Low_complexity Low_complexity 1 29 0 401 0 20 0 chr6 116044327 116044376 -66370866 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 226 98 0 chr6 116044505 116044607 -66370635 + MER113 DNA MER1_type? 1 112 -409 21 0 0 0 chr6 116045251 116045272 -66369970 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr6 116045357 116045381 -66369861 + (A)n Simple_repeat Simple_repeat 1 24 0 258 105 0 0 chr6 116045381 116045419 -66369823 + (GA)n Simple_repeat Simple_repeat 2 39 0 225 0 0 0 chr6 116047699 116047724 -66367518 + (TG)n Simple_repeat Simple_repeat 2 26 0 2025 147 3 0 chr6 116049624 116049923 -66365319 + AluJo SINE Alu 1 300 -12 2193 132 3 0 chr6 116154120 116154431 -66260811 - AluSq SINE Alu -1 312 1 249 336 93 0 chr6 116154566 116154673 -66260569 - L2 LINE L2 -3 3269 3153 322 117 83 0 chr6 116154713 116154773 -66260469 + Tigger3(Golem) DNA MER2_type 40 104 -2925 1350 135 19 0 chr6 116154774 116154982 -66260260 + Tigger3(Golem) DNA MER2_type 2817 3028 -1 191 246 366 35 chr6 116156641 116156783 -66258459 + MIR3 SINE MIR 9 197 -11 1001 83 0 0 chr6 116157322 116157443 -66257799 - AluSg/x SINE Alu -45 267 147 196 257 30 50 chr6 116157599 116157700 -66257542 + MIR SINE MIR 20 118 -90 310 328 86 28 chr6 116157747 116158037 -66257205 + L2 LINE L2 2996 3302 -11 202 250 54 0 chr6 116158084 116158140 -66257102 + MIR SINE MIR 161 219 -43 2351 106 0 0 chr6 116158351 116158652 -66256590 - AluSx SINE Alu -11 301 1 558 123 0 0 chr6 116160417 116160498 -66254744 + AluSg/x SINE Alu 218 298 -14 687 167 7 35 chr6 116160500 116160644 -66254598 + L1ME2 LINE L1 6025 6164 0 212 290 43 21 chr6 116160725 116160818 -66254424 + L3b LINE CR1 1269 1363 -220 1474 202 133 36 chr6 116160905 116161325 -66253917 + MLT1C LTR MaLR 7 467 0 243 94 0 94 chr6 116161431 116161484 -66253758 - L1MCa LINE L1 -4373 2053 2006 195 250 0 0 chr6 116161815 116161863 -66253379 - L2 LINE L2 -8 3305 3258 1869 130 32 7 chr6 116162078 116162362 -66252880 - AluJb SINE Alu -21 291 1 247 167 0 21 chr6 116162861 116162909 -66252333 - MLT1F LTR MaLR -495 47 1 684 331 164 26 chr6 116162942 116163268 -66251974 - L3 LINE CR1 -349 1228 948 2186 119 3 7 chr6 116163268 116163578 -66251664 - AluSg SINE Alu -1 309 1 684 331 164 26 chr6 116163578 116163981 -66251261 - L3 LINE CR1 -629 948 398 1925 145 0 25 chr6 116164039 116164356 -66250886 - AluJb SINE Alu -3 309 1 2221 121 0 0 chr6 116164943 116165240 -66250002 - AluSx SINE Alu -15 297 1 268 211 0 18 chr6 116165364 116165421 -66249821 + L2 LINE L2 3242 3297 -16 239 318 0 12 chr6 116166041 116166126 -66249116 + MIR SINE MIR 121 204 -58 283 244 158 16 chr6 116168996 116169123 -66246119 + MIR SINE MIR 48 192 -70 317 266 93 29 chr6 116169359 116169498 -66245744 - L2 LINE L2 -2 3270 3123 1703 252 58 7 chr6 116170338 116170787 -66244455 + REP3 LTR ERV 1 472 -90 288 286 62 9 chr6 116170966 116171078 -66244164 - MIR SINE MIR -70 138 21 21 0 0 0 chr6 116171362 116171383 -66243859 + AT_rich Low_complexity Low_complexity 1 21 0 271 280 201 7 chr6 116171902 116172191 -66243051 - LTR33A LTR ERVL -2 521 177 239 328 8 16 chr6 116173185 116173307 -66241935 - LTR33A LTR ERVL -399 124 4 1813 161 0 69 chr6 116174132 116174467 -66240775 - AluJb SINE Alu 0 312 1 458 95 16 0 chr6 116174622 116174685 -66240557 - AluJb SINE Alu -174 138 75 287 246 61 81 chr6 116174918 116175087 -66240155 - L1MC4 LINE L1 -1042 6957 6742 1943 143 3 17 chr6 116175087 116175406 -66239836 - AluJb SINE Alu 0 312 1 287 246 61 81 chr6 116175406 116175437 -66239805 - L1MC4 LINE L1 -1257 6742 6712 2435 39 0 0 chr6 116176625 116176933 -66238309 - AluY SINE Alu 0 308 1 387 0 0 0 chr6 116177566 116177609 -66237633 + (TA)n Simple_repeat Simple_repeat 2 44 0 1880 121 79 17 chr6 116177609 116177899 -66237343 - AluSx SINE Alu -4 308 1 2153 104 4 0 chr6 116178416 116178717 -66236525 + AluSg SINE Alu 1 302 0 205 182 0 0 chr6 116178916 116178949 -66236293 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 1011 311 29 14 chr6 116178949 116179427 -66235815 - L1MC4 LINE L1 -2007 5801 5316 564 127 0 0 chr6 116179460 116179539 -66235703 + MADE1 DNA Mariner 1 79 -1 28 48 0 0 chr6 116179834 116179876 -66235366 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr6 116180139 116180167 -66235075 + AT_rich Low_complexity Low_complexity 1 28 0 579 180 9 9 chr6 116180288 116180399 -66234843 - LTR40b LTR ERVL -4 458 348 394 215 0 0 chr6 116180449 116180514 -66234728 - LTR40a LTR ERVL -213 306 242 274 226 106 0 chr6 116180519 116180632 -66234610 - L2 LINE L2 -218 3054 2920 297 179 116 32 chr6 116180681 116180776 -66234466 - HAL1b LINE L1 -890 458 356 1920 101 98 11 chr6 116180806 116181092 -66234150 - AluSx SINE Alu -1 311 1 650 224 50 19 chr6 116181461 116181622 -66233620 - MER104 DNA Tc2 -9 171 6 2106 135 7 0 chr6 116182216 116182520 -66232722 - AluSx SINE Alu -4 308 3 28 79 0 0 chr6 116186128 116186191 -66229051 + AT_rich Low_complexity Low_complexity 1 63 0 494 228 127 13 chr6 116187437 116187595 -66227647 - MLT1J LTR MaLR 0 511 336 1197 174 78 50 chr6 116187595 116187853 -66227389 - AluJb SINE Alu -47 265 1 899 292 46 21 chr6 116187854 116188179 -66227063 - MLT1J LTR MaLR -173 338 6 2249 101 0 23 chr6 116188576 116188882 -66226360 + AluSc SINE Alu 1 299 -10 240 171 0 0 chr6 116189163 116189204 -66226038 + MER63C DNA MER1_type 1 41 -889 * 611 264 7 0 chr6 116189202 116189346 -66225896 + MER63C DNA MER1_type 255 399 -531 829 155 0 84 chr6 116189375 116189445 -66225797 - FAM SINE Alu -178 143 91 2389 91 3 0 chr6 116189445 116189743 -66225499 - AluSx SINE Alu -13 299 1 829 155 0 84 chr6 116189743 116189827 -66225415 - FAM SINE Alu -230 91 2 1156 199 58 18 chr6 116189827 116190203 -66225039 + MER63C DNA MER1_type 384 828 -102 421 162 29 0 chr6 116190199 116190267 -66224975 - MER57A LTR ERV1 -39 364 295 * 631 95 0 42 chr6 116190305 116190400 -66224842 - AluSg/x SINE Alu -12 300 210 550 200 0 0 chr6 116190401 116190496 -66224746 + MER63C DNA MER1_type 828 922 -8 2327 119 30 25 chr6 116190777 116191139 -66224103 - THE1B LTR MaLR 0 364 1 1511 170 48 53 chr6 116191916 116192145 -66223097 - MLT1A2 LTR MaLR 0 374 146 2147 147 3 0 chr6 116192145 116192457 -66222785 + AluSq SINE Alu 1 313 0 1511 170 48 53 chr6 116192457 116192603 -66222639 - MLT1A2 LTR MaLR -228 146 1 1830 187 16 0 chr6 116192650 116192955 -66222287 + AluJo SINE Alu 1 310 -2 1972 172 90 16 chr6 116192958 116193393 -66221849 - MLT1C LTR MaLR 0 467 1 1286 278 83 53 chr6 116193393 116194096 -66221146 - L1MEd LINE L1 -4087 2223 1543 2154 133 0 0 chr6 116194096 116194389 -66220853 + AluSx SINE Alu 2 294 -18 1286 278 83 53 chr6 116194389 116195357 -66219885 - L1MEd LINE L1 -4767 1543 461 274 346 44 7 chr6 116195763 116195899 -66219343 - MIR3 SINE MIR -12 196 56 328 258 48 36 chr6 116196296 116196463 -66218779 + L2 LINE L2 2519 2687 -627 315 0 0 0 chr6 116196464 116196499 -66218743 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1033 162 6 0 chr6 116196499 116196666 -66218576 - AluJb SINE Alu -27 285 118 704 171 0 0 chr6 116196694 116196805 -66218437 - AluJb SINE Alu -179 133 23 352 312 145 18 chr6 116196838 116196949 -66218293 + L2 LINE L2 2681 2777 -536 1740 200 76 29 chr6 116196949 116197394 -66217848 - MLT1C LTR MaLR 0 467 2 352 312 145 18 chr6 116197394 116197632 -66217610 + L2 LINE L2 2777 3059 -254 514 233 0 0 chr6 116197645 116197748 -66217494 + L2 LINE L2 3208 3310 -3 306 254 220 6 chr6 116198089 116198266 -66216976 - MIR SINE MIR 0 262 48 326 194 28 0 chr6 116199046 116199118 -66216124 - L1MC3 LINE L1 -1 7784 7711 1677 140 32 14 chr6 116199227 116199540 -66215702 - AluJb SINE Alu 0 318 1 185 156 0 22 chr6 116199548 116199593 -66215649 + L2 LINE L2 3099 3142 -171 1653 137 62 3 chr6 116199710 116200002 -66215240 + L1MD3 LINE L1 7507 7815 -180 187 245 20 0 chr6 116201187 116201236 -66214006 - L2 LINE L2 -14 3258 3209 263 246 61 18 chr6 116201593 116201707 -66213535 + MIR3 SINE MIR 83 201 -7 7548 183 40 11 chr6 116202039 116204160 -66211082 - L1M1 LINE L1 -4065 1263 3 307 342 76 34 chr6 116205777 116206014 -66209228 + L3 LINE CR1 1118 1364 -213 1895 117 4 0 chr6 116206624 116206880 -66208362 - AluSx SINE Alu -20 292 36 314 243 252 0 chr6 116207214 116207317 -66207925 - MER5A DNA MER1_type 0 189 61 22 0 0 0 chr6 116207317 116207339 -66207903 + AT_rich Low_complexity Low_complexity 1 22 0 854 210 38 5 chr6 116207350 116207536 -66207706 - L1PB4 LINE L1 -1 6155 5964 226 208 21 0 chr6 116207538 116207586 -66207656 - MER5A DNA MER1_type -113 76 28 202 324 19 56 chr6 116208705 116208813 -66206429 - MIR SINE MIR -86 122 19 817 186 22 22 chr6 116209296 116209438 -66205804 + L1MB3 LINE L1 6001 6145 -38 2026 137 0 0 chr6 116209438 116209737 -66205505 - AluSx SINE Alu -13 299 1 817 186 22 22 chr6 116209737 116209777 -66205465 + L1MB3 LINE L1 6144 6183 0 1907 145 0 0 chr6 116210078 116210406 -66204836 + AluSx SINE Alu 1 312 0 751 252 235 13 chr6 116212002 116212304 -66202938 - MLT1F1 LTR MaLR -5 562 194 373 316 90 19 chr6 116215247 116215402 -66199840 + L3b LINE CR1 1330 1495 -88 264 266 0 32 chr6 116215470 116215564 -66199678 + MER113 DNA MER1_type? 30 120 -401 1629 200 84 25 chr6 116215680 116216121 -66199121 + MLT1C LTR MaLR 1 467 0 2136 106 6 6 chr6 116216611 116216923 -66198319 - AluSq SINE Alu -1 312 1 250 322 0 0 chr6 116217260 116217319 -66197923 - L2 LINE L2 -5 3308 3250 8451 192 43 60 chr6 116217816 116218691 -66196551 - L1MB7 LINE L1 -1 6183 5294 2473 59 3 0 chr6 116218691 116218997 -66196245 - AluY SINE Alu -4 307 1 8451 192 43 60 chr6 116218997 116219154 -66196088 - L1MB7 LINE L1 -890 5294 5136 2053 109 17 0 chr6 116219154 116219447 -66195795 - AluSx SINE Alu -12 300 3 8451 192 43 60 chr6 116219447 116219926 -66195316 - L1MB7 LINE L1 -1048 5136 4650 2052 188 17 0 chr6 116219926 116220342 -66194900 - L1MA4 LINE L1 -19 6281 5859 8451 192 43 60 chr6 116220342 116221720 -66193522 - L1MB7 LINE L1 -1534 4650 3362 2182 157 8 3 chr6 116221720 116222084 -66193158 + MER47A DNA MER2_type 1 366 0 8451 192 43 60 chr6 116222084 116222470 -66192772 - L1MB7 LINE L1 -2822 3362 2971 319 180 22 67 chr6 116222680 116222769 -66192473 - L1MCa LINE L1 -5002 1424 1340 1868 85 48 29 chr6 116222994 116223266 -66191976 + AluSx SINE Alu 23 299 -13 1683 93 0 4 chr6 116223741 116223967 -66191275 - AluSq SINE Alu -88 225 1 651 299 110 4 chr6 116224870 116225124 -66190118 - MLT1J2 LTR MaLR -147 303 23 965 198 65 32 chr6 116225376 116225624 -66189618 + MIR SINE MIR 5 260 -2 245 306 16 0 chr6 116226216 116226278 -66188964 + L2 LINE L2 3234 3296 -17 2255 128 43 6 chr6 116226769 116227120 -66188122 - THE1B LTR MaLR 0 364 1 2199 111 0 0 chr6 116227401 116227707 -66187535 + AluSx SINE Alu 1 306 -6 1764 69 100 72 chr6 116227941 116228231 -66187011 - AluY SINE Alu -13 298 1 678 218 65 12 chr6 116228310 116228528 -66186714 - MLT1J LTR MaLR -215 231 43 2160 116 0 0 chr6 116229974 116230275 -66184967 + AluSx SINE Alu 1 301 -11 223 250 54 0 chr6 116230486 116230542 -66184700 - MIR SINE MIR -43 219 161 279 299 82 73 chr6 116230589 116230943 -66184299 - L2 LINE L2 -11 3302 2946 186 267 30 50 chr6 116230926 116231027 -66184215 - MIR SINE MIR -90 118 20 * 937 83 0 0 chr6 116231183 116231304 -66183938 + AluSg/x SINE Alu 147 267 -45 216 246 366 35 chr6 116231844 116231986 -66183256 - MIR3 SINE MIR -11 197 9 1397 139 19 0 chr6 116233645 116233853 -66181389 - Tigger3(Golem) DNA MER2_type 0 3029 2818 339 117 83 0 chr6 116233854 116233914 -66181328 - Tigger3(Golem) DNA MER2_type -2925 104 40 261 350 113 0 chr6 116233954 116234051 -66181191 + L2 LINE L2 3153 3260 -12 455 143 60 12 chr6 116234144 116234228 -66181014 + AluY SINE Alu 209 296 -15 210 268 54 0 chr6 116234437 116234493 -66180749 - MIR SINE MIR -43 219 161 1785 107 0 0 chr6 116234513 116234755 -66180487 - AluSx SINE Alu -70 242 1 2031 132 3 0 chr6 116235239 116235550 -66179692 + AluSq SINE Alu 1 312 -1 180 306 0 0 chr6 116237748 116237797 -66177445 + MIR SINE MIR 179 227 -35 1621 108 119 25 chr6 116237917 116238194 -66177048 - AluSg SINE Alu -6 304 2 1277 214 39 92 chr6 116238196 116238729 -66176513 - MLT1D LTR MaLR 0 505 1 445 278 80 0 chr6 116241512 116241663 -66173579 - MER91A DNA MER1_type -33 163 1 4412 76 7 0 chr6 116241917 116242467 -66172775 - MER41A LTR ERV1 0 554 1 354 23 0 0 chr6 116243598 116243641 -66171601 + (TG)n Simple_repeat Simple_repeat 2 44 0 31 44 0 0 chr6 116244182 116244227 -66171015 + AT_rich Low_complexity Low_complexity 1 45 0 346 203 51 59 chr6 116245806 116245924 -66169318 - MARNA DNA Mariner -197 389 273 265 49 24 24 chr6 116246082 116246123 -66169119 - MARNA DNA Mariner -484 102 62 257 250 62 50 chr6 116246223 116246303 -66168939 - L3 LINE CR1 -2 1575 1495 263 318 35 0 chr6 116246370 116246455 -66168787 + MIR3 SINE MIR 97 184 -24 1906 160 0 0 chr6 116250045 116250352 -66164890 - AluJb SINE Alu -5 307 1 204 286 57 50 chr6 116250495 116250528 -66164714 + MIR SINE MIR 85 116 -146 2525 155 47 0 chr6 116250528 116250935 -66164307 + MSTB LTR MaLR 1 426 0 204 286 57 50 chr6 116250935 116251041 -66164201 + MIR SINE MIR 116 225 -37 2226 100 0 6 chr6 116251807 116252118 -66163124 + AluSc SINE Alu 1 309 0 341 268 134 73 chr6 116252286 116252465 -66162777 + MIR3 SINE MIR 18 207 -1 274 220 17 0 chr6 116255804 116255863 -66159379 + MIR3 SINE MIR 99 158 -50 204 135 0 0 chr6 116256112 116256149 -66159093 + (CAT)n Simple_repeat Simple_repeat 2 38 0 2225 103 0 0 chr6 116256213 116256515 -66158727 + AluSg SINE Alu 1 302 -8 2367 55 0 0 chr6 116256824 116257114 -66158128 + AluY SINE Alu 1 290 -21 401 298 79 28 chr6 116257268 116257446 -66157796 + MIR SINE MIR 19 205 -57 2718 84 5 24 chr6 116257613 116257984 -66157258 + THE1B LTR MaLR 1 364 0 705 263 52 19 chr6 116258361 116258560 -66156682 + MIR SINE MIR 8 204 -4 403 222 46 37 chr6 116258586 116258694 -66156548 - MLT1J2 LTR MaLR 0 450 342 455 269 145 16 chr6 116258738 116258924 -66156318 - MLT1J1 LTR MaLR -235 211 2 837 331 67 40 chr6 116259808 116260455 -66154787 - HERV16 LTR ERVL -3970 1026 363 721 253 16 39 chr6 116260601 116260783 -66154459 - MER5B DNA MER1_type 0 178 1 2152 117 0 0 chr6 116261133 116261431 -66153811 + AluSx SINE Alu 1 298 -14 1259 198 78 103 chr6 116261733 116262294 -66152948 - MLT1H LTR MaLR 0 549 3 475 318 98 14 chr6 116262470 116262829 -66152413 + L1ME4a LINE L1 5559 5947 -217 1241 180 4 17 chr6 116262893 116263132 -66152110 + AluJo SINE Alu 67 302 -10 1073 152 132 10 chr6 116263147 116263351 -66151891 + MLT2B1 LTR ERVL 1 229 -291 258 164 73 0 chr6 116263361 116263416 -66151826 + MLT2B1 LTR ERVL 462 520 0 25 65 0 0 chr6 116263611 116263657 -66151585 + AT_rich Low_complexity Low_complexity 1 46 0 331 214 19 29 chr6 116263725 116263828 -66151414 + L1ME4a LINE L1 5962 6063 -58 2054 128 3 0 chr6 116263894 116264198 -66151044 + AluSx SINE Alu 1 305 -7 640 266 146 95 chr6 116264902 116265416 -66149826 - MLT1K LTR MaLR -39 549 10 318 240 23 4 chr6 116265806 116265910 -66149332 + L1M4 LINE L1 3670 3773 -2373 364 261 115 25 chr6 116266046 116266203 -66149039 + L1M4 LINE L1 3888 4058 -2088 5422 201 43 37 chr6 116266214 116266919 -66148323 + L1MC3 LINE L1 6426 7144 -641 2488 94 41 8 chr6 116266919 116267281 -66147961 + THE1C LTR MaLR 2 375 0 5422 201 43 37 chr6 116267281 116267927 -66147315 + L1MC3 LINE L1 7144 7785 0 440 242 110 9 chr6 116267975 116268117 -66147125 + L1M4 LINE L1 4137 4293 -1853 315 0 0 0 chr6 116268123 116268158 -66147084 + (CA)n Simple_repeat Simple_repeat 2 36 0 471 278 42 21 chr6 116268160 116268444 -66146798 + L1M4 LINE L1 4328 4617 -1529 25 0 0 0 chr6 116270402 116270427 -66144815 + AT_rich Low_complexity Low_complexity 1 25 0 1742 159 4 0 chr6 116270427 116270703 -66144539 - AluSx SINE Alu -25 287 11 325 282 205 13 chr6 116270954 116271110 -66144132 + MER5A DNA MER1_type 3 188 -1 276 340 156 52 chr6 116271127 116271299 -66143943 - L2 LINE L2 -16 3256 3103 1752 175 93 28 chr6 116271299 116271698 -66143544 + MSTC LTR MaLR 1 425 -3 276 340 156 52 chr6 116271698 116271813 -66143429 - L2 LINE L2 -169 3103 2939 200 286 0 18 chr6 116272161 116272217 -66143025 + CT-rich Low_complexity Low_complexity 2 56 0 4143 193 48 11 chr6 116272458 116273353 -66141889 - MER63C DNA MER1_type -1 929 2 476 289 35 40 chr6 116273432 116273633 -66141609 + MIR3 SINE MIR 5 204 -4 2019 124 0 10 chr6 116274638 116274937 -66140305 - AluSx SINE Alu -16 296 1 976 156 0 13 chr6 116274952 116275106 -66140136 + FRAM SINE Alu 1 146 -30 274 276 52 8 chr6 116275441 116275575 -66139667 - LTR33A LTR ERVL -2 521 382 254 228 0 0 chr6 116275718 116275775 -66139467 - LTR33A LTR ERVL -465 58 2 247 344 38 23 chr6 116275796 116275927 -66139315 - MIR SINE MIR -71 191 59 195 170 0 0 chr6 116278431 116278478 -66136764 + CT-rich Low_complexity Low_complexity 1 47 0 506 179 45 27 chr6 116280449 116280561 -66134681 + MIR SINE MIR 113 226 -36 580 284 90 19 chr6 116280789 116281000 -66134242 + MIR SINE MIR 18 243 -19 564 312 11 27 chr6 116281596 116281782 -66133460 + MIR SINE MIR 63 245 -17 256 313 10 21 chr6 116282412 116282508 -66132734 - L2 LINE L2 -174 3098 3004 572 226 51 40 chr6 116283737 116283914 -66131328 + MIR SINE MIR 33 211 -51 316 375 0 0 chr6 116284445 116284533 -66130709 + MIR3 SINE MIR 73 160 -48 306 195 0 0 chr6 116285702 116285779 -66129463 + T-rich Low_complexity Low_complexity 1 77 0 980 146 13 0 chr6 116287394 116287552 -66127690 - AluSg/x SINE Alu -16 294 135 301 312 18 0 chr6 116288109 116288218 -66127024 + L2 LINE L2 3200 3310 -3 360 243 25 13 chr6 116288392 116288501 -66126741 - MIR3 SINE MIR -3 205 95 736 10 21 10 chr6 116288875 116288972 -66126270 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 221 235 59 0 chr6 116290183 116290234 -66125008 + MIR SINE MIR 44 97 -111 16290 113 19 21 chr6 116292177 116293965 -66121277 - Tigger1 DNA MER2_type -5 2413 629 1743 165 13 13 chr6 116293965 116294268 -66120974 - AluJo SINE Alu -9 303 1 16290 113 19 21 chr6 116294268 116294896 -66120346 - Tigger1 DNA MER2_type -1789 629 1 197 33 33 0 chr6 116295069 116295099 -66120143 + (TAAAAA)n Simple_repeat Simple_repeat 1 31 0 219 139 0 0 chr6 116295545 116295581 -66119661 + (T)n Simple_repeat Simple_repeat 1 36 0 1788 118 28 38 chr6 116295756 116296045 -66119197 - AluJo SINE Alu -14 298 13 1305 120 195 45 chr6 116296058 116296325 -66118917 - AluJo SINE Alu -3 309 3 214 325 32 24 chr6 116296339 116296462 -66118780 - MIR SINE MIR -14 248 125 216 222 28 42 chr6 116296620 116296692 -66118550 - MIR3 SINE MIR -17 191 121 204 265 255 0 chr6 116297525 116297623 -66117619 + MIR3 SINE MIR 43 165 -43 786 222 145 9 chr6 116297867 116298088 -66117154 + MIR SINE MIR 11 261 -1 488 261 36 14 chr6 116298071 116298209 -66117033 - MIR SINE MIR -101 161 21 * 350 281 44 30 chr6 116298317 116298452 -66116790 - MIR SINE MIR -124 138 2 303 298 48 48 chr6 116299534 116299658 -66115584 - L2 LINE L2 -1 3271 3148 206 239 22 0 chr6 116299771 116299817 -66115425 + CT-rich Low_complexity Low_complexity 1 47 0 201 74 0 0 chr6 116300073 116300100 -66115142 + (CA)n Simple_repeat Simple_repeat 1 27 0 1980 123 0 7 chr6 116300923 116301225 -66114017 - AluSx SINE Alu -8 304 5 26 30 0 0 chr6 116301323 116301356 -66113886 + AT_rich Low_complexity Low_complexity 1 33 0 2057 126 0 13 chr6 116301530 116301840 -66113402 + AluSc SINE Alu 1 306 -3 424 202 24 0 chr6 116304362 116304446 -66110796 - MER96 DNA MER1_type? -89 86 1 1999 122 7 0 chr6 116306046 116306333 -66108909 + AluSx SINE Alu 1 289 -23 188 35 35 0 chr6 116306337 116306366 -66108876 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 21 71 0 0 chr6 116306438 116306480 -66108762 + AT_rich Low_complexity Low_complexity 1 42 0 2093 100 0 3 chr6 116306737 116307053 -66108189 + AluSx SINE Alu 1 315 0 580 223 61 40 chr6 116308249 116308397 -66106845 + MIR SINE MIR 11 161 -101 252 331 146 7 chr6 116308697 116308848 -66106394 + MIR SINE MIR 21 192 -70 259 266 64 0 chr6 116309502 116309596 -66105646 + MIR SINE MIR 51 150 -112 189 0 0 0 chr6 116310152 116310173 -66105069 + (CGG)n Simple_repeat Simple_repeat 2 22 0 41 48 0 0 chr6 116310247 116310309 -66104933 + GC_rich Low_complexity Low_complexity 1 62 0 38 22 0 0 chr6 116310489 116310534 -66104708 + GC_rich Low_complexity Low_complexity 1 45 0 27 29 0 0 chr6 116314157 116314191 -66101051 + AT_rich Low_complexity Low_complexity 1 34 0 318 26 0 0 chr6 116314464 116314503 -66100739 + (GA)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chr6 116314502 116314524 -66100718 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 189 0 0 0 chr6 116315996 116316017 -66099225 + (A)n Simple_repeat Simple_repeat 1 21 0 284 342 103 0 chr6 116316512 116316629 -66098613 + MIR SINE MIR 25 153 -109 202 218 55 0 chr6 116318353 116318408 -66096834 + MIR SINE MIR 93 150 -112 264 273 101 30 chr6 116318610 116318709 -66096533 - L2 LINE L2 -1 3312 3207 182 240 164 19 chr6 116318825 116318929 -66096313 - L2 LINE L2 -1 3271 3153 350 281 25 41 chr6 116320174 116320295 -66094947 - MIR SINE MIR -133 129 11 805 276 106 75 chr6 116320645 116321109 -66094133 - L3 LINE CR1 -156 1421 944 23 0 0 0 chr6 116321117 116321140 -66094102 + AT_rich Low_complexity Low_complexity 1 23 0 330 317 100 21 chr6 116321180 116321420 -66093822 - MIR SINE MIR -2 260 2 201 308 42 42 chr6 116321456 116321576 -66093666 - L3 LINE CR1 -1273 304 185 464 304 7 7 chr6 116325750 116325898 -66089344 - MER103 DNA DNA -2 164 17 2301 104 7 3 chr6 116327120 116327428 -66087814 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr6 116329142 116329164 -66086078 + GC_rich Low_complexity Low_complexity 1 22 0 1426 148 0 29 chr6 116329192 116329435 -66085807 - AluJo SINE Alu -1 311 76 496 336 94 14 chr6 116330530 116330881 -66084361 - L3 LINE CR1 -37 1540 1162 1452 143 14 0 chr6 116330909 116331126 -66084116 - AluJo SINE Alu -89 223 4 297 301 36 0 chr6 116331478 116331561 -66083681 + MIR SINE MIR 30 115 -147 831 130 50 105 chr6 116332117 116332182 -66083060 - MER5A DNA MER1_type 0 189 122 2285 169 63 15 chr6 116332182 116332660 -66082582 + L1MB4 LINE L1 5680 6180 0 831 130 50 105 chr6 116332660 116332794 -66082448 - MER5A DNA MER1_type -67 122 1 345 47 0 0 chr6 116334415 116334458 -66080784 + (TG)n Simple_repeat Simple_repeat 1 43 0 234 276 148 18 chr6 116334609 116334723 -66080519 - MER5B DNA MER1_type -8 181 59 379 232 32 11 chr6 116335904 116335999 -66079243 + Charlie7 DNA MER1_type 3 99 -2513 365 170 67 52 chr6 116336006 116336141 -66079101 + Charlie7 DNA MER1_type 2459 2595 -17 2496 92 0 0 chr6 116338872 116339178 -66076064 + AluSx SINE Alu 1 306 -6 356 289 168 0 chr6 116339335 116339484 -66075758 - MER5A DNA MER1_type -7 182 9 200 326 8 31 chr6 116340620 116340749 -66074493 + G-rich Low_complexity Low_complexity 1 126 0 221 245 0 20 chr6 116342630 116342679 -66072563 + CT-rich Low_complexity Low_complexity 3 50 0 36 77 0 0 chr6 116344248 116344326 -66070916 + AT_rich Low_complexity Low_complexity 1 78 0 218 260 0 0 chr6 116344396 116344446 -66070796 + L2 LINE L2 3264 3313 0 377 274 103 0 chr6 116345953 116346070 -66069172 - MIR SINE MIR -14 248 120 2359 196 8 13 chr6 116348340 116348810 -66066432 - L1MC3 LINE L1 -594 7191 6724 1902 148 21 3 chr6 116349426 116349717 -66065525 - AluJo SINE Alu -16 296 1 1083 248 142 9 chr6 116350415 116350866 -66064376 + L2 LINE L2 1199 1709 -1605 1164 141 21 62 chr6 116350887 116351128 -66064114 - L1MB2 LINE L1 0 6171 5941 1467 139 12 121 chr6 116351128 116351460 -66063782 - L1MB2 LINE L1 -444 5727 5432 330 294 40 24 chr6 116351465 116351591 -66063651 + L2 LINE L2 1705 1832 -1482 402 168 66 95 chr6 116351652 116351789 -66063453 + L2 LINE L2 3090 3222 -91 2469 274 82 30 chr6 116351840 116352610 -66062632 + L2 LINE L2 1913 2781 -532 2254 82 11 0 chr6 116352610 116352970 -66062272 + AluSq SINE Alu 1 363 0 2469 274 82 30 chr6 116352970 116353532 -66061710 + L2 LINE L2 2781 3313 0 489 159 153 6 chr6 116353676 116353809 -66061433 + MER5A DNA MER1_type 4 159 -30 444 291 43 0 chr6 116353841 116353958 -66061284 - MER5B DNA MER1_type 0 178 57 273 119 0 0 chr6 116355391 116355433 -66059809 + (CA)n Simple_repeat Simple_repeat 1 42 0 308 318 58 84 chr6 116355602 116355910 -66059332 + L2 LINE L2 2930 3229 -43 240 323 81 0 chr6 116355985 116356109 -66059133 + MIR SINE MIR 48 181 -81 325 141 14 28 chr6 116356347 116356418 -66058824 + Charlie7 DNA MER1_type 2434 2503 -109 * 358 253 0 0 chr6 116356409 116356496 -66058746 - LTR37B LTR ERV1 -377 91 5 204 120 40 20 chr6 116356905 116356955 -66058287 + (TTATA)n Simple_repeat Simple_repeat 5 55 0 348 219 42 42 chr6 116356987 116357106 -66058136 + Charlie7 DNA MER1_type 2494 2612 0 215 231 58 10 chr6 116358064 116358168 -66057074 + L2 LINE L2 2458 2566 -748 647 272 22 13 chr6 116358203 116358427 -66056815 + L2 LINE L2 2678 2903 -411 8913 223 69 24 chr6 116358905 116362004 -66053238 - L1ME LINE L1 -1198 4882 679 646 173 0 50 chr6 116362038 116362177 -66053065 - FLAM_A SINE Alu -1 132 1 631 273 91 0 chr6 116362656 116362865 -66052377 + LTR50 LTR ERVL 1 228 -567 253 246 43 0 chr6 116363093 116363162 -66052080 + LTR50 LTR ERVL 712 783 -12 1850 106 48 27 chr6 116363802 116364094 -66051148 - AluSg SINE Alu -12 298 1 1358 250 113 12 chr6 116364099 116364590 -66050652 - L2 LINE L2 0 3313 2774 573 55 0 0 chr6 116364592 116364665 -66050577 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 7053 48 5 9 chr6 116364776 116366075 -66049167 + SVA Other Other 53 1386 0 476 239 28 0 chr6 116366089 116366198 -66049044 - L2 LINE L2 -528 2786 2675 1688 139 25 4 chr6 116366715 116366995 -66048247 + AluJo SINE Alu 14 299 -13 303 239 57 34 chr6 116367014 116367102 -66048140 - MIR SINE MIR -49 213 124 378 221 13 0 chr6 116367207 116367284 -66047958 + MER58 DNA MER1_type 2342 2419 -1 850 129 0 41 chr6 116370433 116370580 -66044662 - FLAM_C SINE Alu -2 141 1 407 162 81 9 chr6 116370727 116370838 -66044404 + Charlie7 DNA MER1_type 2459 2577 -35 457 355 48 48 chr6 116370917 116370969 -66044273 - L2 LINE L2 -551 2763 2712 1195 177 57 121 chr6 116370969 116371358 -66043884 + MLT1A1 LTR MaLR 1 364 -1 457 355 48 48 chr6 116371358 116371804 -66043438 - L2 LINE L2 -601 2713 2265 351 125 0 0 chr6 116371876 116371924 -66043318 + AluJ/FLAM SINE Alu 19 66 -236 208 210 25 62 chr6 116371991 116372072 -66043170 - L2 LINE L2 -25 3288 3211 318 145 121 72 chr6 116372732 116372815 -66042427 + MLT1B LTR MaLR 1 87 -303 700 158 45 8 chr6 116372815 116372948 -66042294 - AluJo SINE Alu -173 139 2 1489 189 19 26 chr6 116372949 116373262 -66041980 + MLT1B LTR MaLR 80 390 0 331 209 100 78 chr6 116374374 116374441 -66040801 + MER113 DNA MER1_type? 1 65 -456 1640 200 124 34 chr6 116374441 116374875 -66040367 + MLT2B1 LTR ERVL 3 485 -35 393 58 0 0 chr6 116374875 116374927 -66040315 + (CA)n Simple_repeat Simple_repeat 2 53 0 1640 200 124 34 chr6 116374927 116374967 -66040275 + MLT2B1 LTR ERVL 485 520 0 331 209 100 78 chr6 116374967 116375089 -66040153 + MER113 DNA MER1_type? 65 183 -338 1742 159 3 3 chr6 116375089 116375378 -66039864 + AluSx SINE Alu 1 289 -23 504 0 0 0 chr6 116375379 116375435 -66039807 + (TA)n Simple_repeat Simple_repeat 1 56 0 331 209 100 78 chr6 116375435 116375472 -66039770 + MER113 DNA MER1_type? 182 235 -286 874 245 160 51 chr6 116375705 116376199 -66039043 - MLT1H1 LTR MaLR 0 555 8 325 355 92 7 chr6 116376317 116376469 -66038773 + MIR SINE MIR 20 184 -78 1982 130 0 0 chr6 116376554 116376863 -66038379 - AluSx SINE Alu 0 309 1 1594 246 131 46 chr6 116377173 116377891 -66037351 + MER20B DNA MER1_type 5 783 0 250 278 25 106 chr6 116378120 116378318 -66036924 + MIR SINE MIR 80 261 -1 201 257 150 44 chr6 116378508 116378621 -66036621 + L3 LINE CR1 1287 1411 -166 2044 125 3 13 chr6 116379346 116379658 -66035584 + AluSx SINE Alu 1 309 -3 238 353 114 18 chr6 116380219 116380386 -66034856 + L3b LINE CR1 1375 1557 -26 207 189 0 0 chr6 116382084 116382121 -66033121 + (TG)n Simple_repeat Simple_repeat 1 37 0 216 97 0 0 chr6 116384195 116384226 -66031016 + (T)n Simple_repeat Simple_repeat 1 31 0 495 0 0 0 chr6 116386167 116386222 -66029020 + (TG)n Simple_repeat Simple_repeat 2 56 0 2357 66 10 0 chr6 116387363 116387666 -66027576 + AluY SINE Alu 1 306 -5 2066 113 36 0 chr6 116387677 116388044 -66027198 + AluSq SINE Alu 1 378 0 2412 39 0 0 chr6 116388490 116388773 -66026469 + AluY SINE Alu 5 287 -24 60 73 0 0 chr6 116388773 116388896 -66026346 + AT_rich Low_complexity Low_complexity 1 123 0 180 231 0 0 chr6 116388896 116389000 -66026242 + (TA)n Simple_repeat Simple_repeat 2 105 0 246 272 10 0 chr6 116389012 116389115 -66026127 + (TA)n Simple_repeat Simple_repeat 1 104 0 858 219 118 22 chr6 116389699 116389927 -66025315 - MIR SINE MIR 0 262 13 250 328 145 0 chr6 116389953 116390084 -66025158 + MIR3 SINE MIR 56 205 -3 1607 147 3 32 chr6 116390830 116391115 -66024127 + AluJb SINE Alu 29 305 -7 1931 52 13 0 chr6 116391221 116391487 -66023755 + L1PA8 LINE L1 5920 6188 0 386 283 58 25 chr6 116392210 116392330 -66022912 + L2 LINE L2 3148 3271 -1 198 0 0 0 chr6 116393116 116393138 -66022104 + (A)n Simple_repeat Simple_repeat 1 22 0 1704 138 7 24 chr6 116393352 116393478 -66021764 + AluSx SINE Alu 12 139 -173 2186 79 3 35 chr6 116393478 116393794 -66021448 + AluY SINE Alu 3 308 -3 1704 138 7 24 chr6 116393794 116393965 -66021277 + AluSx SINE Alu 139 304 -8 359 221 126 91 chr6 116394174 116394405 -66020837 - MLT1L LTR MaLR -339 276 38 414 264 144 52 chr6 116395501 116395675 -66019567 + MIR SINE MIR 43 232 -30 531 282 68 16 chr6 116395697 116395945 -66019297 + HAL1 LINE L1 78 338 -2169 958 236 245 33 chr6 116395949 116396368 -66018874 + HAL1 LINE L1 382 943 -1564 1800 136 28 0 chr6 116396368 116396654 -66018588 + AluJb SINE Alu 1 294 -18 958 236 245 33 chr6 116396654 116396776 -66018466 + HAL1 LINE L1 943 1038 -1469 1853 149 0 7 chr6 116396782 116397083 -66018159 + AluJb SINE Alu 1 299 -13 819 151 5 122 chr6 116397184 116397389 -66017853 + AluJb SINE Alu 122 302 -10 251 310 0 0 chr6 116397610 116397668 -66017574 - L1M3c LINE L1 -6078 63 6 2305 104 0 0 chr6 116399506 116399813 -66015429 - AluSx SINE Alu -5 307 1 231 258 0 0 chr6 116400329 116400395 -66014847 + HAL1 LINE L1 1975 2040 -467 495 235 97 37 chr6 116400406 116400623 -66014619 + HAL1 LINE L1 2120 2349 -158 1673 149 31 3 chr6 116400623 116401061 -66014181 + AluJb SINE Alu 1 446 0 266 280 160 16 chr6 116401066 116401191 -66014051 + HAL1 LINE L1 2334 2476 -31 808 165 0 0 chr6 116401372 116401493 -66013749 - FLAM_C SINE Alu -18 125 5 42 57 0 0 chr6 116401524 116401594 -66013648 + AT_rich Low_complexity Low_complexity 1 70 0 279 246 0 0 chr6 116401742 116401799 -66013443 + L2 LINE L2 3250 3306 -7 870 249 74 55 chr6 116402082 116402408 -66012834 - L2 LINE L2 0 3313 2982 670 215 0 0 chr6 116402785 116402915 -66012327 + FLAM_A SINE Alu 2 131 -2 727 251 174 0 chr6 116403115 116403310 -66011932 + MIR SINE MIR 28 256 -6 2924 232 50 10 chr6 116403511 116404052 -66011190 - L1M4 LINE L1 -2974 3172 2579 1623 126 20 4 chr6 116404052 116404299 -66010943 - AluSx SINE Alu -61 251 1 2924 232 50 10 chr6 116404299 116404652 -66010590 - L1M4 LINE L1 -3567 2579 2242 729 223 74 37 chr6 116404648 116404917 -66010325 + L1MCa LINE L1 1220 1498 -4928 * 228 67 0 0 chr6 116405530 116405560 -66009682 + (GA)n Simple_repeat Simple_repeat 1 30 0 1293 179 0 4 chr6 116406023 116406252 -66008990 + AluJo SINE Alu 3 230 -82 765 183 0 0 chr6 116406386 116406517 -66008725 + FLAM_C SINE Alu 2 132 -11 33 25 0 0 chr6 116406519 116406559 -66008683 + AT_rich Low_complexity Low_complexity 1 40 0 1942 112 35 3 chr6 116406559 116406846 -66008396 + AluSx SINE Alu 1 296 -16 1549 187 17 84 chr6 116407806 116408224 -66007018 + MLT1B LTR MaLR 1 390 0 1827 161 0 3 chr6 116408825 116409129 -66006113 + AluJb SINE Alu 1 303 -9 765 166 42 62 chr6 116409345 116409538 -66005704 - MER53 DNA DNA 0 189 1 677 171 0 0 chr6 116410760 116410871 -66004371 + MLT2D LTR ERVL 4 114 -300 1075 162 118 9 chr6 116410876 116411105 -66004137 + AluJb SINE Alu 45 298 -14 1292 152 41 67 chr6 116411108 116411377 -66003865 + MLT2D LTR ERVL 107 368 -46 229 224 0 0 chr6 116411507 116411556 -66003686 + MLT2D LTR ERVL 468 516 -4 675 227 128 33 chr6 116411592 116411834 -66003408 + L2 LINE L2 1567 1831 -1483 1295 267 78 76 chr6 116411838 116412222 -66003020 - L1ME3A LINE L1 -9 6161 5779 246 29 29 0 chr6 116412222 116412256 -66002986 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2135 67 0 60 chr6 116412256 116412556 -66002686 - AluSg SINE Alu -1 315 1 1295 267 78 76 chr6 116412556 116412576 -66002666 - L1ME3A LINE L1 -391 5779 5761 1402 219 132 52 chr6 116412576 116413078 -66002164 - MLT1F LTR MaLR 0 542 1 1295 267 78 76 chr6 116413078 116413488 -66001754 - L1ME3A LINE L1 -409 5761 5343 509 332 94 7 chr6 116413492 116413896 -66001346 + LTR16A LTR ERVL 8 446 -4 1289 251 30 30 chr6 116413928 116414494 -66000748 - L1ME3A LINE L1 -817 5329 4764 4636 153 15 41 chr6 116414520 116414591 -66000651 - L1MB3 LINE L1 0 6183 6112 2343 95 0 7 chr6 116414591 116414895 -66000347 + AluSq SINE Alu 1 302 -11 4636 153 15 41 chr6 116414895 116416276 -65998966 - L1MB3 LINE L1 -71 6112 4762 183 129 0 0 chr6 116416287 116416318 -65998924 + (T)n Simple_repeat Simple_repeat 1 31 0 40865 33 21 3 chr6 116416324 116422354 -65992888 - L1PA3 LINE L1 -3 6152 8 2777 196 73 25 chr6 116422352 116422669 -65992573 - L1MB3 LINE L1 -1373 4773 4472 * 1810 145 0 0 chr6 116422669 116422931 -65992311 - AluSx SINE Alu 0 312 51 2777 196 73 25 chr6 116422931 116422964 -65992278 - L1MB3 LINE L1 -1674 4472 4442 2176 87 40 92 chr6 116422964 116423344 -65991898 - THE1B LTR MaLR -4 360 1 2777 196 73 25 chr6 116423344 116423736 -65991506 - L1MB3 LINE L1 -1704 4442 3995 871 188 0 0 chr6 116425198 116425342 -65989900 - AluJb SINE Alu -31 281 138 474 18 0 0 chr6 116425574 116425629 -65989613 + (TG)n Simple_repeat Simple_repeat 2 56 0 1147 227 94 50 chr6 116427666 116428102 -65987140 + LTR40b LTR ERVL 1 455 -7 1408 161 79 24 chr6 116428299 116428591 -65986651 + AluJo SINE Alu 1 308 -4 459 127 115 32 chr6 116429311 116429468 -65985774 - Charlie7 DNA MER1_type 0 2612 2443 2117 131 0 10 chr6 116429902 116430216 -65985026 + AluSx SINE Alu 1 311 -1 315 250 38 12 chr6 116430379 116430459 -65984783 + L2 LINE L2 3226 3307 -6 21 57 0 0 chr6 116430803 116430838 -65984404 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr6 116431378 116431400 -65983842 + (T)n Simple_repeat Simple_repeat 1 22 0 692 258 129 33 chr6 116435540 116435918 -65979324 + L1MC4 LINE L1 7184 7609 -433 2514 70 0 6 chr6 116435918 116436230 -65979012 + AluY SINE Alu 1 310 -1 692 258 129 33 chr6 116436230 116436278 -65978964 + L1MC4 LINE L1 7609 7651 -391 1011 159 18 12 chr6 116436286 116436449 -65978793 - AluJb SINE Alu -14 298 135 350 276 40 52 chr6 116436449 116436623 -65978619 + L1MC4 LINE L1 7645 7816 -226 862 182 0 0 chr6 116436626 116436769 -65978473 - FLAM_C SINE Alu 0 143 1 355 245 21 90 chr6 116436770 116437003 -65978239 + L1MC4 LINE L1 7809 8025 -17 1826 136 29 39 chr6 116437020 116437328 -65977914 + AluJb SINE Alu 1 305 -7 341 287 221 50 chr6 116437340 116437521 -65977721 + L1MC/D LINE L1 5434 5645 -2163 180 77 0 0 chr6 116438272 116438298 -65976944 + (A)n Simple_repeat Simple_repeat 1 26 0 226 299 15 15 chr6 116438361 116438428 -65976814 + L2 LINE L2 3245 3311 -2 242 109 0 0 chr6 116438670 116438716 -65976526 + LTR66 LTR ERVL 394 439 -171 1965 143 10 19 chr6 116439039 116439347 -65975895 - AluJb SINE Alu -7 305 1 417 213 147 113 chr6 116439653 116439803 -65975439 - MER58A DNA MER1_type 0 155 1 195 299 150 34 chr6 116439825 116439972 -65975270 + MIR SINE MIR 99 262 0 2144 128 3 0 chr6 116440179 116440476 -65974766 + AluSp SINE Alu 1 298 -15 1243 118 11 0 chr6 116440759 116440937 -65974305 - AluSg/x SINE Alu 0 312 133 2190 110 7 0 chr6 116440938 116441230 -65974012 - AluSp SINE Alu -19 294 1 1032 170 0 6 chr6 116441330 116441495 -65973747 - FRAM SINE Alu -2 164 1 23 0 0 0 chr6 116442865 116442888 -65972354 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr6 116444452 116444487 -65970755 + AT_rich Low_complexity Low_complexity 1 35 0 1595 189 13 50 chr6 116445118 116445436 -65969806 + AluJo SINE Alu 1 306 -6 1799 104 67 67 chr6 116445574 116445873 -65969369 + AluSx SINE Alu 1 299 -13 3642 252 79 15 chr6 116445881 116447452 -65967790 + L1ME2 LINE L1 3159 4838 -1308 7089 56 13 57 chr6 116447465 116448669 -65966573 - L1PA7 LINE L1 -1 6468 5283 6049 19 0 1 chr6 116448669 116449365 -65965877 + L1PA2 LINE L1 5457 6152 -3 27795 94 20 10 chr6 116449367 116453893 -65961349 - L1PA7 LINE L1 -1162 5299 718 348 269 175 21 chr6 116453898 116454132 -65961110 + L1ME2 LINE L1 4848 5117 -1029 1846 204 165 31 chr6 116454232 116454713 -65960529 + L1ME2 LINE L1 5249 5664 -500 441 0 0 0 chr6 116454713 116454762 -65960480 + (CA)n Simple_repeat Simple_repeat 2 50 0 1846 204 165 31 chr6 116454762 116455054 -65960188 + L1ME2 LINE L1 5664 6151 -13 180 111 0 0 chr6 116455054 116455081 -65960161 + (TAA)n Simple_repeat Simple_repeat 1 27 0 792 178 0 0 chr6 116455997 116456126 -65959116 + FLAM_C SINE Alu 1 129 -4 724 109 0 10 chr6 116456377 116456478 -65958764 - FLAM_A SINE Alu -12 130 31 465 247 260 0 chr6 116456489 116456639 -65958603 + MER58A DNA MER1_type 35 223 -1 254 238 32 0 chr6 116456689 116456752 -65958490 - L1MC5 LINE L1 -866 7095 7031 813 145 30 8 chr6 116457032 116457163 -65958079 + AluSq/x SINE Alu 1 134 -179 779 142 8 22 chr6 116457347 116457481 -65957761 + FLAM_C SINE Alu 2 133 0 1863 168 0 3 chr6 116457488 116457785 -65957457 + AluSx SINE Alu 1 296 -16 2080 118 0 20 chr6 116457787 116458083 -65957159 + AluSx SINE Alu 1 290 -22 2286 99 7 3 chr6 116458302 116458604 -65956638 + AluSq SINE Alu 1 303 -10 315 161 0 0 chr6 116458604 116458660 -65956582 + GA-rich Low_complexity Low_complexity 1 56 0 310 300 45 0 chr6 116458754 116458864 -65956378 + L1ME4a LINE L1 6007 6121 0 23 33 0 0 chr6 116459448 116459478 -65955764 + AT_rich Low_complexity Low_complexity 1 30 0 294 301 108 38 chr6 116459478 116459588 -65955654 - MIR SINE MIR -17 245 115 1828 137 27 7 chr6 116459588 116459881 -65955361 + AluSg SINE Alu 1 299 -11 294 301 108 38 chr6 116459881 116459956 -65955286 - MIR SINE MIR -147 115 47 183 100 0 0 chr6 116460302 116460332 -65954910 + (TAAAA)n Simple_repeat Simple_repeat 4 33 0 2066 102 11 14 chr6 116461039 116461354 -65953888 + AluSx SINE Alu 1 314 0 294 228 248 0 chr6 116461609 116461710 -65953532 + L2 LINE L2 3188 3313 0 908 118 0 22 chr6 116461770 116461906 -65953336 - FLAM_C SINE Alu 0 133 1 1871 138 0 21 chr6 116461967 116462258 -65952984 + AluJb SINE Alu 3 287 -25 24 0 0 0 chr6 116462258 116462282 -65952960 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr6 116463300 116463332 -65951910 + AT_rich Low_complexity Low_complexity 1 32 0 1350 197 4 20 chr6 116465035 116465284 -65949958 + AluJo SINE Alu 12 256 -56 22 0 0 0 chr6 116465299 116465321 -65949921 + AT_rich Low_complexity Low_complexity 1 22 0 2293 84 0 0 chr6 116465459 116465744 -65949498 + AluSg SINE Alu 17 301 -9 2049 109 0 0 chr6 116465765 116466039 -65949203 + AluSg SINE Alu 31 304 -6 490 132 0 0 chr6 116466581 116466649 -65948593 + AluS SINE Alu 1 68 -245 2228 103 121 40 chr6 116467586 116467982 -65947260 + MSTA LTR MaLR 1 428 0 342 211 55 18 chr6 116468728 116468837 -65946405 + MER103 DNA DNA 5 117 -49 1931 130 3 50 chr6 116468900 116469199 -65946043 + AluSg SINE Alu 9 293 -17 307 266 239 0 chr6 116469223 116469332 -65945910 + MIR SINE MIR 2 136 -126 22 0 0 0 chr6 116469802 116469824 -65945418 + AT_rich Low_complexity Low_complexity 1 22 0 739 267 112 4 chr6 116470042 116470274 -65944968 + MIR SINE MIR 1 257 -5 23 33 0 0 chr6 116470397 116470427 -65944815 + AT_rich Low_complexity Low_complexity 1 30 0 1984 145 3 31 chr6 116470691 116471008 -65944234 + AluJo SINE Alu 1 308 -4 231 290 87 0 chr6 116471255 116471324 -65943918 + L2 LINE L2 3236 3310 -3 1662 184 40 7 chr6 116471789 116472088 -65943154 + AluJo SINE Alu 1 309 -3 242 243 28 21 chr6 116472121 116472265 -65942977 + (CATA)n Simple_repeat Simple_repeat 2 146 0 230 164 0 96 chr6 116472277 116472350 -65942892 - L1MC4 LINE L1 -1341 6701 6636 1352 129 236 8 chr6 116472375 116472616 -65942626 - AluSg1 SINE Alu -13 296 1 691 150 25 0 chr6 116472706 116472826 -65942416 - FRAM SINE Alu -21 155 33 908 262 20 25 chr6 116473063 116473307 -65941935 - MIR SINE MIR -13 249 7 1869 125 3 35 chr6 116473904 116474191 -65941051 + AluSx SINE Alu 6 283 -29 180 0 0 0 chr6 116474191 116474211 -65941031 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr6 116474625 116474646 -65940596 + AT_rich Low_complexity Low_complexity 1 21 0 225 163 0 0 chr6 116478075 116478118 -65937124 + MER113 DNA MER1_type? 4 46 -475 12816 128 48 29 chr6 116478155 116478534 -65936708 + Tigger1 DNA MER2_type 31 401 -2017 3588 111 2 6 chr6 116478534 116479046 -65936196 + MER9 LTR ERVK 1 510 -1 12816 128 48 29 chr6 116479046 116480050 -65935192 + Tigger1 DNA MER2_type 401 1384 -1034 1859 138 11 0 chr6 116480050 116480326 -65934916 + AluSx SINE Alu 33 311 -1 12816 128 48 29 chr6 116480326 116480505 -65934737 + Tigger1 DNA MER2_type 1384 1558 -860 2277 109 3 3 chr6 116480505 116480816 -65934426 - AluSx SINE Alu -1 311 1 12816 128 48 29 chr6 116480816 116481146 -65934096 + Tigger1 DNA MER2_type 1558 1880 -538 2430 93 0 0 chr6 116481146 116481457 -65933785 + AluY SINE Alu 1 311 0 12816 128 48 29 chr6 116481457 116481747 -65933495 + Tigger1 DNA MER2_type 1880 2266 -152 2450 71 0 10 chr6 116481747 116482056 -65933186 + AluY SINE Alu 1 306 -5 12816 128 48 29 chr6 116482056 116482212 -65933030 + Tigger1 DNA MER2_type 2266 2418 0 21 0 0 0 chr6 116483025 116483046 -65932196 + AT_rich Low_complexity Low_complexity 1 21 0 1817 188 7 0 chr6 116483059 116483357 -65931885 - AluJb SINE Alu -12 300 1 263 273 45 0 chr6 116483724 116483790 -65931452 - L2 LINE L2 -20 3293 3225 1829 148 7 10 chr6 116483848 116484139 -65931103 + AluSx SINE Alu 21 310 -2 26 0 0 0 chr6 116484598 116484624 -65930618 + AT_rich Low_complexity Low_complexity 1 26 0 298 53 0 0 chr6 116484637 116484675 -65930567 + LTR23 LTR ERV1 324 361 -76 25 0 0 0 chr6 116484675 116484700 -65930542 + AT_rich Low_complexity Low_complexity 1 25 0 207 213 0 21 chr6 116484700 116484747 -65930495 + MIR3 SINE MIR 153 198 -10 1239 192 131 8 chr6 116484759 116485019 -65930223 - AluSx SINE Alu -20 292 1 1379 185 47 25 chr6 116485149 116485425 -65929817 - AluJo SINE Alu -30 282 1 2453 78 0 0 chr6 116485588 116485882 -65929360 + AluY SINE Alu 1 294 -17 2168 69 55 0 chr6 116485902 116486177 -65929065 + AluY SINE Alu 1 290 -21 215 327 45 36 chr6 116486669 116486779 -65928463 + L2 LINE L2 3148 3258 -14 266 216 91 125 chr6 116486887 116487119 -65928123 + L1ME LINE L1 5616 5839 -282 1794 100 120 8 chr6 116487464 116487723 -65927519 - AluSg1 SINE Alu -21 288 1 550 194 10 0 chr6 116488040 116488143 -65927099 - AluJb SINE Alu -72 240 137 2133 93 0 30 chr6 116488671 116488971 -65926271 - AluSx SINE Alu -21 291 1 1143 231 84 10 chr6 116489302 116489613 -65925629 + MER2 DNA MER2_type 5 338 -7 1981 127 3 23 chr6 116489816 116490123 -65925119 + AluJb SINE Alu 11 311 -1 518 286 74 5 chr6 116490482 116490671 -65924571 + MIR SINE MIR 59 260 -2 226 143 0 0 chr6 116491658 116491693 -65923549 + U6 snRNA snRNA 1 35 -72 460 198 0 0 chr6 116491693 116491779 -65923463 + U6 snRNA snRNA 13 98 -9 641 103 0 0 chr6 116491779 116491876 -65923366 - FLAM_A SINE Alu 0 142 46 28 0 0 0 chr6 116491903 116491931 -65923311 + AT_rich Low_complexity Low_complexity 1 28 0 2387 77 13 0 chr6 116491934 116492232 -65923010 + AluSp SINE Alu 1 302 -11 1949 147 34 0 chr6 116492318 116492611 -65922631 + AluSx SINE Alu 1 303 -9 2116 97 10 48 chr6 116492653 116492964 -65922278 + AluSq SINE Alu 1 299 -14 1934 93 8 0 chr6 116493111 116493369 -65921873 + AluY SINE Alu 39 298 -13 22 56 0 0 chr6 116493876 116493912 -65921330 + AT_rich Low_complexity Low_complexity 1 36 0 262 274 27 0 chr6 116493980 116494053 -65921189 + MLT1G LTR MaLR 216 290 -300 1074 218 32 68 chr6 116494148 116494456 -65920786 + L1MC4a LINE L1 6442 6738 -1070 987 224 122 80 chr6 116494453 116494509 -65920733 + L1MC4 LINE L1 7274 7326 -716 * 2452 182 50 4 chr6 116494509 116494992 -65920250 + MLT1D LTR MaLR 1 505 0 987 224 122 80 chr6 116494992 116495291 -65919951 + L1MC4 LINE L1 7326 7659 -383 7077 21 3 353 chr6 116495291 116497425 -65917817 + SVA Other Other 1 1399 0 987 224 122 80 chr6 116497425 116497557 -65917685 + L1MC4 LINE L1 7659 7784 -258 22 35 0 0 chr6 116497591 116497620 -65917622 + AT_rich Low_complexity Low_complexity 1 29 0 4330 124 51 19 chr6 116498466 116498729 -65916513 - L1PA16 LINE L1 -119 6047 5794 2455 76 0 10 chr6 116498729 116499031 -65916211 - AluSp SINE Alu -14 299 1 4330 124 51 19 chr6 116499031 116499672 -65915570 - L1PA16 LINE L1 -372 5794 5116 469 143 76 8 chr6 116499675 116499794 -65915448 - Charlie2 DNA MER1_type -143 2719 2593 1736 155 34 24 chr6 116499853 116500150 -65915092 - AluJb SINE Alu -12 300 1 2197 89 30 17 chr6 116500162 116500464 -65914778 - AluSx SINE Alu -6 306 1 1696 194 3 0 chr6 116500606 116500900 -65914342 + AluJo SINE Alu 1 295 -17 507 221 10 0 chr6 116500974 116501078 -65914164 - Charlie2a DNA MER1_type -1229 1633 1529 1668 109 65 48 chr6 116501088 116501382 -65913860 + AluSx SINE Alu 14 312 0 795 223 56 0 chr6 116502015 116502212 -65913030 - MER20 DNA MER1_type 0 219 12 192 125 0 0 chr6 116502223 116502255 -65912987 + (CA)n Simple_repeat Simple_repeat 1 32 0 758 152 4 188 chr6 116502861 116503138 -65912104 + AluJo SINE Alu 87 312 0 22 0 0 0 chr6 116503592 116503614 -65911628 + AT_rich Low_complexity Low_complexity 1 22 0 251 239 150 53 chr6 116503943 116504056 -65911186 + L2 LINE L2 3147 3270 -2 383 252 194 7 chr6 116504059 116504198 -65911044 - L2 LINE L2 0 3313 3149 1563 92 48 20 chr6 116504198 116504449 -65910793 - Tigger2 DNA MER2_type 0 2718 2461 3844 135 55 9 chr6 116504491 116505178 -65910064 - Tigger2 DNA MER2_type -1993 725 7 1456 241 107 99 chr6 116505187 116506021 -65909221 - L2 LINE L2 -209 3104 2257 2005 152 10 3 chr6 116506021 116506331 -65908911 + AluSx SINE Alu 1 312 0 1456 241 107 99 chr6 116506331 116506361 -65908881 - L2 LINE L2 -1056 2257 2229 218 382 65 41 chr6 116506370 116506493 -65908749 + L2 LINE L2 3124 3249 -23 2739 16 0 10 chr6 116506523 116506837 -65908405 + AluYa5 SINE Alu 1 311 0 2395 81 3 3 chr6 116506902 116507209 -65908033 - AluSc SINE Alu -2 307 1 2271 111 0 0 chr6 116507512 116507840 -65907402 - AluSg SINE Alu 0 310 1 1810 104 108 8 chr6 116507842 116508110 -65907132 - AluSx SINE Alu -17 295 1 2043 103 0 0 chr6 116508349 116508612 -65906630 + AluSx SINE Alu 23 285 -27 1410 153 14 0 chr6 116508708 116508930 -65906312 + AluJb SINE Alu 86 310 -2 829 191 7 7 chr6 116509035 116509187 -65906055 + AluJb SINE Alu 140 291 -21 224 309 168 34 chr6 116509646 116509795 -65905447 + L2 LINE L2 2923 3091 -181 423 307 22 17 chr6 116509861 116510040 -65905202 + MIR SINE MIR 2 181 -81 464 184 0 0 chr6 116510111 116510198 -65905044 + L1M4c LINE L1 118 204 -6180 * 1477 121 53 18 chr6 116510197 116510215 -65905027 + L1M4c LINE L1 1944 1960 -4424 1699 147 292 20 chr6 116510215 116510704 -65904538 + LTR29 LTR ERV1 1 622 0 1477 121 53 18 chr6 116510704 116510966 -65904276 + L1M4c LINE L1 1960 2234 -4150 694 167 15 23 chr6 116510971 116511103 -65904139 + FLAM_C SINE Alu 9 139 -4 2021 184 65 13 chr6 116511105 116511234 -65904008 + L1M4c LINE L1 2224 2345 -4037 1898 150 3 23 chr6 116511234 116511541 -65903701 - AluJo SINE Alu -11 301 1 2021 184 65 13 chr6 116511541 116512188 -65903054 + L1M4c LINE L1 2345 3041 -3341 404 250 65 0 chr6 116512247 116512339 -65902903 - MIR SINE MIR -125 137 40 359 240 66 98 chr6 116513169 116513307 -65901935 - MER5B DNA MER1_type 0 178 46 2293 66 35 0 chr6 116513307 116513595 -65901647 + AluY SINE Alu 1 298 -13 359 240 66 98 chr6 116513595 116513639 -65901603 - MER5B DNA MER1_type -132 46 2 2019 133 0 0 chr6 116514081 116514382 -65900860 + AluSx SINE Alu 1 301 -11 2044 108 0 3 chr6 116514582 116514877 -65900365 + AluSx SINE Alu 1 294 -18 6308 52 10 51 chr6 116514980 116516086 -65899156 + SVA Other Other 433 1383 -3 548 231 148 9 chr6 116516102 116516318 -65898924 - MER46C DNA MER2_type -54 284 39 430 242 158 0 chr6 116516685 116516805 -65898437 + MIR SINE MIR 28 166 -96 1716 78 20 20 chr6 116516812 116517067 -65898175 - AluSq SINE Alu -58 255 1 1759 143 11 0 chr6 116517209 116517522 -65897720 + AluSx SINE Alu 1 316 0 526 181 63 31 chr6 116517605 116517732 -65897510 + FLAM_A SINE Alu 2 132 -1 216 135 0 0 chr6 116519763 116519800 -65895442 + (CCG)n Simple_repeat Simple_repeat 2 38 0 1272 64 0 0 chr6 116520259 116520416 -65894826 + AluSg SINE Alu 1 157 -153 1769 76 60 0 chr6 116520510 116520760 -65894482 + AluSg SINE Alu 1 265 -45 404 286 91 35 chr6 116520861 116521060 -65894182 - MIR SINE MIR -37 225 16 2160 101 3 0 chr6 116522326 116522622 -65892620 - AluSx SINE Alu -14 298 2 1597 93 5 0 chr6 116522720 116522934 -65892308 + AluSg/x SINE Alu 80 294 -16 1992 117 0 0 chr6 116523002 116523285 -65891957 + AluSx SINE Alu 21 303 -9 1033 127 6 0 chr6 116523450 116523607 -65891635 - AluSg/x SINE Alu -21 291 134 2259 95 0 3 chr6 116523607 116523911 -65891331 - AluSq SINE Alu -10 303 1 585 190 43 0 chr6 116524659 116524775 -65890467 - FLAM_C SINE Alu -18 125 5 1518 174 15 109 chr6 116524908 116525310 -65889932 + MLT1A1 LTR MaLR 1 364 -1 2165 97 0 7 chr6 116525604 116525913 -65889329 + AluY SINE Alu 1 307 -4 2834 143 22 26 chr6 116525913 116526418 -65888824 - MER41B LTR ERV1 -132 503 1 848 256 113 29 chr6 116526434 116526630 -65888612 - MER69 DNA AcHobo -1900 626 393 1769 141 125 0 chr6 116526630 116526935 -65888307 + MER61A LTR ERV1 1 343 0 848 256 113 29 chr6 116526935 116527047 -65888195 - MER69 DNA AcHobo -2133 393 292 2102 107 0 0 chr6 116527117 116527406 -65887836 + AluSg SINE Alu 1 289 -21 2082 194 29 0 chr6 116527739 116528120 -65887122 + MER89 LTR ERV1 166 557 -2 1105 117 0 0 chr6 116528347 116528501 -65886741 - AluSg/x SINE Alu -28 284 131 2010 114 38 0 chr6 116528504 116528794 -65886448 - AluSx SINE Alu -11 301 1 36 70 0 0 chr6 116528902 116528973 -65886269 + AT_rich Low_complexity Low_complexity 1 71 0 525 154 33 0 chr6 116529112 116529203 -65886039 - MER5A DNA MER1_type 0 189 96 313 293 10 20 chr6 116529114 116529213 -65886029 + MER5A DNA MER1_type 17 114 -75 * 344 227 11 45 chr6 116529312 116529400 -65885842 - MER5A DNA MER1_type -103 86 2 235 196 107 98 chr6 116529626 116529738 -65885504 - L2 LINE L2 0 3313 3201 195 312 52 13 chr6 116529981 116530058 -65885184 + MER5A DNA MER1_type 110 189 0 2223 103 0 6 chr6 116530073 116530384 -65884858 + AluSq SINE Alu 1 309 -4 436 200 279 29 chr6 116530451 116530591 -65884651 + MER5B DNA MER1_type 1 175 -3 396 277 223 0 chr6 116530849 116530997 -65884245 - MER5A DNA MER1_type 0 189 9 2188 94 13 0 chr6 116531131 116531439 -65883803 + AluSq SINE Alu 1 312 -1 490 278 218 14 chr6 116531569 116531785 -65883457 + MIR SINE MIR 2 261 -1 528 100 0 0 chr6 116531865 116531945 -65883297 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 1548 173 33 0 chr6 116531945 116532217 -65883025 - AluJb SINE Alu -31 281 1 507 311 7 0 chr6 116532768 116532919 -65882323 - MIR SINE MIR -78 184 33 907 123 0 49 chr6 116532933 116532966 -65882276 - AluSg/x SINE Alu -4 306 273 251 36 18 54 chr6 116532966 116533022 -65882220 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 907 123 0 49 chr6 116533022 116533151 -65882091 - AluSg/x SINE Alu -37 273 152 1177 180 5 0 chr6 116533164 116533238 -65882004 - AluSx SINE Alu -100 212 140 2432 54 0 0 chr6 116533238 116533535 -65881707 - AluY SINE Alu -14 297 1 1177 180 5 0 chr6 116533535 116533671 -65881571 - AluSx SINE Alu -172 140 1 1890 155 94 104 chr6 116534220 116534814 -65880428 - LTR38B LTR ERV1 -19 591 4 233 230 68 0 chr6 116535007 116535081 -65880161 + MER103 DNA DNA 81 159 -7 24 0 0 0 chr6 116535129 116535153 -65880089 + AT_rich Low_complexity Low_complexity 1 24 0 820 163 0 15 chr6 116535159 116535294 -65879948 - FLAM_C SINE Alu 0 133 1 1626 162 0 39 chr6 116535540 116535849 -65879393 - AluJb SINE Alu -15 297 1 1860 174 0 0 chr6 116536467 116536778 -65878464 - AluJo SINE Alu -1 311 1 236 111 22 0 chr6 116537095 116537140 -65878102 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1876 131 0 14 chr6 116537143 116537426 -65877816 - AluSx SINE Alu -33 279 1 330 238 41 122 chr6 116537561 116537733 -65877509 + MIR SINE MIR 49 206 -56 386 269 45 22 chr6 116537872 116538006 -65877236 + MIR SINE MIR 107 243 -19 1736 182 0 10 chr6 116538006 116538313 -65876929 + AluJo SINE Alu 1 304 -8 594 244 235 13 chr6 116538370 116538608 -65876634 + L2 LINE L2 3022 3312 -1 917 136 7 0 chr6 116538709 116538849 -65876393 + AluJo SINE Alu 1 141 -171 830 152 0 15 chr6 116539078 116539210 -65876032 + AluJo/FLAM SINE Alu 1 130 -182 1498 95 112 85 chr6 116539210 116539505 -65875737 - AluSx SINE Alu -9 303 1 207 0 0 0 chr6 116539509 116539532 -65875710 + (T)n Simple_repeat Simple_repeat 1 23 0 745 170 0 41 chr6 116539722 116539869 -65875373 + FLAM_C SINE Alu 2 142 -1 1343 90 0 16 chr6 116540198 116540373 -65874869 - AluSp SINE Alu -7 306 133 2368 60 0 0 chr6 116540373 116540673 -65874569 - AluY SINE Alu -11 300 1 1343 90 0 16 chr6 116540673 116540686 -65874556 - AluSp SINE Alu -180 133 121 234 231 198 11 chr6 116541189 116541280 -65873962 - MIR SINE MIR -109 153 46 427 155 13 187 chr6 116541391 116541499 -65873743 + MER5A DNA MER1_type 43 118 -71 1849 145 13 10 chr6 116541499 116541809 -65873433 - AluSx SINE Alu -1 311 1 427 155 13 187 chr6 116541809 116541855 -65873387 + MER5A DNA MER1_type 118 170 -19 232 167 42 97 chr6 116541811 116541883 -65873359 - MER5A DNA MER1_type -115 74 7 * 1845 144 7 0 chr6 116542457 116542762 -65872480 - AluJb SINE Alu -4 308 2 898 119 8 15 chr6 116543314 116543448 -65871794 + FLAM_C SINE Alu 1 133 0 349 305 29 0 chr6 116543569 116543674 -65871568 + MIR SINE MIR 136 243 -19 216 363 82 24 chr6 116544134 116544558 -65870684 - L2 LINE L2 -337 2977 2529 247 244 0 138 chr6 116544697 116544820 -65870422 - L2 LINE L2 -173 3099 2994 2008 140 7 0 chr6 116544820 116545127 -65870115 + AluSx SINE Alu 4 312 0 2389 87 3 0 chr6 116545140 116545451 -65869791 + AluSx SINE Alu 1 312 0 266 303 13 13 chr6 116545910 116545986 -65869256 - MIR SINE MIR -89 119 44 311 237 79 0 chr6 116545989 116546065 -65869177 + L1MCa LINE L1 1972 2053 -4373 1608 150 11 11 chr6 116546081 116546367 -65868875 + AluJb SINE Alu 15 300 -12 944 241 16 0 chr6 116546371 116546624 -65868618 - L1MEc LINE L1 -5388 1008 752 2211 122 0 0 chr6 116546920 116547231 -65868011 - AluSx SINE Alu -1 311 1 521 171 23 0 chr6 116547298 116547386 -65867856 - U17 snRNA snRNA -117 90 1 297 220 10 140 chr6 116547852 116547901 -65867341 - MER91B DNA MER1_type -12 178 147 731 190 0 29 chr6 116547901 116548038 -65867204 + FLAM_C SINE Alu 1 133 0 297 220 10 140 chr6 116548038 116548088 -65867154 - MER91B DNA MER1_type -43 147 92 1999 127 23 10 chr6 116548118 116548426 -65866816 + AluSx SINE Alu 1 312 0 240 230 90 100 chr6 116548431 116548459 -65866783 - MER91B DNA MER1_type -60 130 103 1935 139 3 0 chr6 116548459 116548754 -65866488 - AluSq SINE Alu -17 296 1 240 230 90 100 chr6 116548754 116548825 -65866417 - MER91B DNA MER1_type -87 103 32 351 270 194 22 chr6 116548997 116549116 -65866126 + L1MC4a LINE L1 6675 6772 -1036 3789 95 3 64 chr6 116549116 116549706 -65865536 - MER41A LTR ERV1 0 554 1 351 270 194 22 chr6 116549706 116549808 -65865434 + L1MC4a LINE L1 6772 6934 -874 186 43 0 0 chr6 116549820 116549843 -65865399 + (TAG)n Simple_repeat Simple_repeat 1 23 0 3467 118 149 49 chr6 116549970 116550666 -65864576 + MER4E LTR ERV1 1 766 0 1886 169 0 3 chr6 116550774 116551081 -65864161 + AluJb SINE Alu 1 306 -6 1507 217 9 86 chr6 116551310 116551738 -65863504 + LTR9 LTR ERV1 1 395 -217 847 203 98 47 chr6 116551716 116551992 -65863250 + LTR19C LTR ERV1 490 779 0 * 2739 53 12 0 chr6 116552234 116552574 -65862668 + LTR14A LTR ERVK 1 344 0 458 235 72 95 chr6 116552795 116553186 -65862056 + LTR15 LTR ERV1 112 493 0 2174 107 0 0 chr6 116553243 116553534 -65861708 - AluSq SINE Alu -22 291 1 1113 279 68 47 chr6 116553620 116554046 -65861196 - LTR16A LTR ERVL 0 450 16 863 191 0 0 chr6 116554124 116554286 -65860956 + FAM SINE Alu 1 43 -6 2213 74 33 0 chr6 116554745 116555044 -65860198 - AluY SINE Alu -2 309 1 512 211 147 32 chr6 116555063 116555219 -65860023 + MER117 DNA MER1_type 18 191 -6 1884 150 7 0 chr6 116555512 116555818 -65859424 + AluSx SINE Alu 3 310 -2 1134 123 12 0 chr6 116555818 116555981 -65859261 + AluSg/x SINE Alu 134 298 -14 1543 165 3 44 chr6 116556357 116556678 -65858564 + AluJo SINE Alu 1 308 -4 194 170 0 21 chr6 116556851 116556898 -65858344 + (TA)n Simple_repeat Simple_repeat 1 46 0 1561 159 71 17 chr6 116557001 116557296 -65857946 + AluJb SINE Alu 1 311 -1 255 250 16 47 chr6 116557496 116557560 -65857682 - L2 LINE L2 -93 3179 3118 411 227 37 104 chr6 116558058 116558099 -65857143 + L1ME1 LINE L1 6013 6055 -111 1658 142 6 62 chr6 116558099 116558422 -65856820 - AluJo SINE Alu -7 305 1 1314 188 112 22 chr6 116558426 116558703 -65856539 - AluJb SINE Alu 0 302 1 411 227 37 104 chr6 116558703 116558819 -65856423 + L1ME1 LINE L1 6058 6164 -2 2146 118 0 0 chr6 116559189 116559493 -65855749 - AluSx SINE Alu -8 304 1 1735 178 31 60 chr6 116559612 116559994 -65855248 - MLT1A2 LTR MaLR 0 374 4 2015 113 14 0 chr6 116560186 116560478 -65854764 + AluSx SINE Alu 1 296 -16 804 238 0 22 chr6 116561047 116561232 -65854010 - AluJb SINE Alu -1 311 131 360 0 0 0 chr6 116561657 116561697 -65853545 + (TG)n Simple_repeat Simple_repeat 2 41 0 2008 131 3 0 chr6 116561751 116562048 -65853194 + AluSq SINE Alu 1 298 -15 938 176 0 0 chr6 116562161 116562326 -65852916 + FRAM SINE Alu 1 164 -12 2476 48 3 6 chr6 116562328 116562640 -65852602 + AluY SINE Alu 1 311 0 403 265 103 99 chr6 116562774 116563046 -65852196 + L2 LINE L2 2422 2694 -620 1990 115 31 0 chr6 116563046 116563334 -65851908 - AluSx SINE Alu -15 297 1 2353 107 0 0 chr6 116564980 116565288 -65849954 - AluSx SINE Alu -4 308 1 1781 69 211 0 chr6 116567222 116567468 -65847774 - AluY SINE Alu -13 298 1 2870 119 29 136 chr6 116567704 116567977 -65847265 + MER41C LTR ERV1 1 301 -253 1972 82 32 18 chr6 116567977 116568256 -65846986 - AluY SINE Alu -12 299 17 2870 119 29 136 chr6 116568256 116568373 -65846869 + MER41C LTR ERV1 301 429 -125 1786 159 7 0 chr6 116568373 116568649 -65846593 - AluSx SINE Alu -26 286 9 2870 119 29 136 chr6 116568649 116568676 -65846566 + MER41C LTR ERV1 429 457 -97 402 21 0 0 chr6 116568676 116568723 -65846519 + (CA)n Simple_repeat Simple_repeat 2 48 0 2870 119 29 136 chr6 116568723 116568923 -65846319 + MER41C LTR ERV1 457 554 0 1850 115 71 41 chr6 116568925 116569264 -65845978 - THE1C LTR MaLR -26 349 1 10713 111 48 11 chr6 116569264 116570330 -65844912 - THE1C-int LTR MaLR 0 1580 438 2363 104 0 0 chr6 116570330 116570637 -65844605 - AluY SINE Alu -2 309 3 10713 111 48 11 chr6 116570637 116571093 -65844149 - THE1C-int LTR MaLR -1142 438 1 1921 147 98 14 chr6 116571093 116571439 -65843803 - THE1C LTR MaLR 0 375 1 448 280 15 15 chr6 116571681 116571813 -65843429 + MIR SINE MIR 20 151 -111 2216 103 26 0 chr6 116572103 116572405 -65842837 - AluSq SINE Alu -3 310 1 2439 91 0 3 chr6 116572418 116572725 -65842517 - AluSp SINE Alu -7 306 1 193 87 22 22 chr6 116572883 116572929 -65842313 + (TTTTTA)n Simple_repeat Simple_repeat 3 48 0 1397 135 0 14 chr6 116572960 116573168 -65842074 - AluJo SINE Alu -107 205 1 860 135 16 8 chr6 116573426 116573552 -65841690 - AluJb SINE Alu -185 127 1 367 296 0 11 chr6 116573559 116573647 -65841595 - L2 LINE L2 0 3272 3186 527 118 32 8 chr6 116573648 116573746 -65841496 + L1MA4A LINE L1 5371 5475 -828 922 106 68 0 chr6 116573778 116573910 -65841332 - AluJb SINE Alu -171 141 1 600 139 0 78 chr6 116573910 116574025 -65841217 + L1MA4A LINE L1 5460 5565 -738 766 102 0 0 chr6 116574026 116574134 -65841108 + L1MA1 LINE L1 6009 6116 -186 1652 164 3 36 chr6 116574134 116574438 -65840804 - AluJb SINE Alu -18 294 1 839 164 0 0 chr6 116574449 116574589 -65840653 - FLAM_C SINE Alu -3 140 1 1492 67 5 0 chr6 116574590 116574783 -65840459 + L1MA1 LINE L1 6108 6301 -1 21 0 0 0 chr6 116574783 116574804 -65840438 + AT_rich Low_complexity Low_complexity 1 21 0 4659 116 55 4 chr6 116574807 116575523 -65839719 + L1MA4A LINE L1 5552 6303 0 2993 63 11 0 chr6 116576176 116576527 -65838715 - THE1A LTR MaLR 0 355 1 12253 100 9 4 chr6 116576527 116578098 -65837144 - THE1A-int LTR MaLR 0 1580 1 2734 94 14 3 chr6 116578098 116578449 -65836793 - THE1A LTR MaLR 0 355 1 2022 147 0 13 chr6 116578899 116579213 -65836029 + AluJb SINE Alu 1 310 -2 299 286 205 35 chr6 116579280 116579451 -65835791 + MIR3 SINE MIR 3 202 -6 767 155 0 0 chr6 116579493 116579609 -65835633 + FLAM_C SINE Alu 1 116 -17 25 31 0 0 chr6 116579623 116579655 -65835587 + AT_rich Low_complexity Low_complexity 1 32 0 1815 129 86 0 chr6 116580249 116580527 -65834715 + AluJb SINE Alu 1 302 -10 222 259 315 6 chr6 116580531 116580693 -65834549 - L2 LINE L2 -775 2539 2328 25 0 0 0 chr6 116581657 116581682 -65833560 + AT_rich Low_complexity Low_complexity 1 25 0 1966 145 3 3 chr6 116581726 116582022 -65833220 + AluSq SINE Alu 3 298 -15 267 333 16 24 chr6 116582180 116582306 -65832936 + L2 LINE L2 3148 3272 0 29 0 0 0 chr6 116582898 116582927 -65832315 + AT_rich Low_complexity Low_complexity 1 29 0 2240 85 7 0 chr6 116582927 116583208 -65832034 - AluSc SINE Alu -26 283 1 219 88 0 0 chr6 116583256 116583290 -65831952 + (TG)n Simple_repeat Simple_repeat 1 34 0 383 56 19 0 chr6 116583599 116583653 -65831589 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2050 135 0 0 chr6 116583655 116583937 -65831305 - AluJo SINE Alu -30 282 1 1133 137 6 11 chr6 116584741 116584923 -65830319 + AluSg/x SINE Alu 121 301 -11 1812 133 54 0 chr6 116584983 116585262 -65829980 - AluJb SINE Alu -18 294 1 2144 97 13 3 chr6 116585294 116585594 -65829648 + L1PA10 LINE L1 5863 6165 -3 253 269 0 13 chr6 116585599 116585677 -65829565 + L1M LINE L1 5350 5426 -695 28 0 0 0 chr6 116585707 116585735 -65829507 + AT_rich Low_complexity Low_complexity 1 28 0 2255 91 0 0 chr6 116585779 116586108 -65829134 + AluSx SINE Alu 1 329 0 878 161 0 0 chr6 116586422 116586559 -65828683 - FRAM SINE Alu -10 166 30 1971 122 11 0 chr6 116586582 116586875 -65828367 - AluSx SINE Alu 0 304 9 279 266 16 0 chr6 116586963 116587027 -65828215 + LTR33 LTR ERVL 15 79 -442 299 261 81 9 chr6 116587137 116587248 -65827994 + LTR33A LTR ERVL 278 396 -127 251 339 39 31 chr6 116587789 116587919 -65827323 + MLT1K LTR MaLR 158 288 -300 654 226 87 51 chr6 116587981 116588176 -65827066 + MLT1K LTR MaLR 379 580 -8 2186 123 0 0 chr6 116588203 116588496 -65826746 + AluSx SINE Alu 1 293 -19 331 316 58 35 chr6 116588835 116589006 -65826236 + MIR3 SINE MIR 20 194 -14 220 45 30 76 chr6 116589773 116589814 -65825428 + (TTAAA)n Simple_repeat Simple_repeat 1 39 -24 2136 69 0 94 chr6 116589814 116590133 -65825109 + AluY SINE Alu 1 289 -22 220 45 30 76 chr6 116590133 116590157 -65825085 + (TTAAA)n Simple_repeat Simple_repeat 39 63 0 1512 165 26 34 chr6 116590172 116590439 -65824803 - AluJo SINE Alu -40 272 8 313 269 239 0 chr6 116592205 116592339 -65822903 - MIR SINE MIR -96 166 1 362 310 72 10 chr6 116592519 116592758 -65822484 - L1MC/D LINE L1 -674 5481 5326 1935 137 3 27 chr6 116592761 116593054 -65822188 - AluJb SINE Alu -22 290 5 41 0 0 0 chr6 116593083 116593124 -65822118 + AT_rich Low_complexity Low_complexity 1 41 0 874 224 16 0 chr6 116593595 116593778 -65821464 - LTR28 LTR ERV1 0 1020 835 * 2262 190 148 74 chr6 116593774 116594590 -65820652 - LTR28 LTR ERV1 -95 925 1 264 228 76 0 chr6 116594643 116594722 -65820520 - L1P LINE L1 -2456 3690 3606 182 37 37 0 chr6 116594722 116594749 -65820493 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 1338 201 41 37 chr6 116595028 116595392 -65819850 + MLT2B1 LTR ERVL 1 355 -59 205 174 76 35 chr6 116595416 116595588 -65819654 + (TA)n Simple_repeat Simple_repeat 1 179 0 2408 89 0 0 chr6 116595628 116595921 -65819321 + AluSx SINE Alu 1 293 -19 226 98 118 20 chr6 116595972 116596023 -65819219 + MLT2B1 LTR ERVL 460 515 0 210 216 0 0 chr6 116596071 116596108 -65819134 + (TG)n Simple_repeat Simple_repeat 2 38 0 540 265 115 78 chr6 116596146 116596216 -65819026 - L1MEc LINE L1 -4579 1817 1751 2265 60 7 3 chr6 116596216 116596523 -65818719 - AluY SINE Alu 0 308 1 540 265 115 78 chr6 116596523 116596685 -65818557 - L1MEc LINE L1 -4645 1751 1596 2247 122 0 0 chr6 116596685 116596981 -65818261 - AluSx SINE Alu -16 296 1 540 265 115 78 chr6 116596981 116597263 -65817979 - L1MEc LINE L1 -4800 1596 1326 2392 99 0 0 chr6 116597263 116597565 -65817677 + AluSx SINE Alu 1 302 -10 540 265 115 78 chr6 116597565 116597881 -65817361 - L1MEc LINE L1 -5070 1326 953 4203 257 74 25 chr6 116597989 116599084 -65816158 + L1MCc LINE L1 205 1245 -5696 2329 48 4 0 chr6 116599084 116599356 -65815886 + AluY SINE Alu 36 308 -3 4203 257 74 25 chr6 116599356 116599900 -65815342 + L1MCc LINE L1 1245 1962 -4979 1483 165 6 113 chr6 116599900 116600228 -65815014 + AluJb SINE Alu 1 293 -9 4203 257 74 25 chr6 116600228 116600396 -65814846 + L1MCc LINE L1 1962 2120 -4821 2515 64 0 3 chr6 116601061 116601372 -65813870 - AluY SINE Alu -1 310 1 1500 99 134 0 chr6 116601967 116602190 -65813052 - AluSg SINE Alu -57 253 1 751 164 0 9 chr6 116602450 116602566 -65812676 - FLAM_C SINE Alu -27 116 2 1984 167 0 0 chr6 116602621 116602920 -65812322 - AluJb SINE Alu -12 300 2 269 338 12 0 chr6 116603373 116603453 -65811789 + L3 LINE CR1 1491 1571 -6 197 212 0 0 chr6 116603454 116603487 -65811755 + L3 LINE CR1 1530 1562 -15 21 0 0 0 chr6 116603504 116603525 -65811717 + AT_rich Low_complexity Low_complexity 1 21 0 965 137 8 0 chr6 116603757 116603888 -65811354 + FLAM_C SINE Alu 2 133 0 29 28 0 0 chr6 116603888 116603924 -65811318 + AT_rich Low_complexity Low_complexity 1 36 0 1950 166 13 0 chr6 116604009 116604317 -65810925 - AluJb SINE Alu 0 312 1 28 0 0 0 chr6 116606462 116606490 -65808752 + AT_rich Low_complexity Low_complexity 1 28 0 847 234 48 26 chr6 116606842 116607073 -65808169 + L1M4 LINE L1 3982 4217 -1929 382 277 0 10 chr6 116607482 116607583 -65807659 - MER5B DNA MER1_type -78 100 1 2296 82 0 60 chr6 116607594 116607925 -65807317 - AluY SINE Alu 0 311 1 2565 55 0 13 chr6 116607940 116608250 -65806992 - AluY SINE Alu -5 306 1 874 282 98 60 chr6 116608684 116609393 -65805849 - L2 LINE L2 -121 3192 2440 2332 93 7 0 chr6 116610355 116610656 -65804586 - AluY SINE Alu -8 303 1 353 188 42 83 chr6 116611340 116611436 -65803806 - L2 LINE L2 -1 3312 3221 553 207 89 54 chr6 116611713 116611916 -65803326 - L2 LINE L2 -3 3310 3101 2427 80 3 0 chr6 116611964 116612266 -65802976 - AluSg SINE Alu -7 303 1 287 224 0 0 chr6 116612923 116612981 -65802261 + MIR SINE MIR 84 141 -121 2551 47 3 0 chr6 116613758 116614055 -65801187 + AluY SINE Alu 1 298 -13 900 165 0 0 chr6 116614121 116614254 -65800988 - FLAM_C SINE Alu 0 133 1 251 253 98 40 chr6 116614562 116614736 -65800506 + MER65B LTR ERV1 327 510 -21 654 186 68 17 chr6 116614832 116614950 -65800292 - Tigger7 DNA MER2_type -577 128 5 271 220 34 0 chr6 116614964 116615023 -65800219 - MER103 DNA DNA -48 118 58 623 117 21 21 chr6 116615113 116615207 -65800035 - AluSx SINE Alu -9 301 208 1193 136 0 0 chr6 116615209 116615371 -65799871 - AluSx SINE Alu -150 162 1 265 247 11 54 chr6 116615827 116615920 -65799322 - MIR SINE MIR -56 206 118 30 0 0 0 chr6 116616064 116616094 -65799148 + AT_rich Low_complexity Low_complexity 1 30 0 906 187 0 47 chr6 116616919 116617090 -65798152 - FRAM SINE Alu -3 163 1 731 314 25 33 chr6 116617737 116617979 -65797263 - MIR SINE MIR -10 252 13 304 243 0 0 chr6 116618081 116618151 -65797091 - MER117 DNA MER1_type -114 83 14 399 297 88 16 chr6 116618162 116618344 -65796898 - MER91A DNA MER1_type 0 196 2 198 286 48 0 chr6 116618476 116618539 -65796703 - MIR SINE MIR -70 138 73 1648 163 29 4 chr6 116618559 116618835 -65796407 + AluJb SINE Alu 1 283 -29 591 136 18 45 chr6 116619650 116619760 -65795482 - FRAM SINE Alu -7 169 63 2306 53 42 7 chr6 116620112 116620396 -65794846 + AluY SINE Alu 1 294 -17 22 35 0 0 chr6 116621251 116621280 -65793962 + AT_rich Low_complexity Low_complexity 1 29 0 645 224 52 0 chr6 116621291 116621425 -65793817 + MLT1A1 LTR MaLR 1 141 -224 23 68 0 0 chr6 116621555 116621599 -65793643 + AT_rich Low_complexity Low_complexity 1 44 0 1721 170 3 37 chr6 116622041 116622364 -65792878 + AluJb SINE Alu 1 312 0 923 72 0 0 chr6 116622423 116622534 -65792708 + HY1 scRNA scRNA 1 111 -1 21 0 0 0 chr6 116622534 116622555 -65792687 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 116622596 116622627 -65792615 + AT_rich Low_complexity Low_complexity 1 31 0 1527 154 55 26 chr6 116623140 116623298 -65791944 - AluJo SINE Alu -21 291 120 213 39 0 0 chr6 116623298 116623324 -65791918 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 1527 154 55 26 chr6 116623324 116623438 -65791804 - AluJo SINE Alu -192 120 11 2194 176 68 113 chr6 116623527 116624100 -65791142 - MER44D DNA MER2_type 0 605 4 1661 171 68 3 chr6 116624141 116624433 -65790809 - AluJb SINE Alu -1 311 1 1928 121 10 24 chr6 116624622 116624912 -65790330 - AluJo SINE Alu -16 296 11 775 283 19 60 chr6 116625346 116625615 -65789627 - MIR SINE MIR -3 259 2 1496 129 0 0 chr6 116626562 116626764 -65788478 - AluSx SINE Alu -110 202 1 2286 104 7 0 chr6 116626845 116627143 -65788099 - AluSx SINE Alu -12 300 1 344 248 233 8 chr6 116627195 116627328 -65787914 + MIR SINE MIR 74 236 -26 293 274 108 20 chr6 116627924 116628026 -65787216 - MIR SINE MIR -2 260 150 686 307 127 6 chr6 116628034 116628373 -65786869 - L2 LINE L2 -1216 2098 1719 1900 300 153 59 chr6 116628515 116629155 -65786087 + L2 LINE L2 1044 1623 -1690 2123 123 10 3 chr6 116629155 116629465 -65785777 + AluSx SINE Alu 1 312 0 1900 300 153 59 chr6 116629465 116630904 -65784338 + L2 LINE L2 1623 3310 -3 251 138 35 0 chr6 116631068 116631126 -65784116 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2177 130 0 3 chr6 116631643 116631944 -65783298 - AluSx SINE Alu -12 300 1 2545 60 0 0 chr6 116632213 116632511 -65782731 + AluSq SINE Alu 1 298 -15 2484 91 0 0 chr6 116632512 116632819 -65782423 + AluY SINE Alu 1 307 -4 197 32 0 32 chr6 116632899 116632930 -65782312 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1849 94 42 66 chr6 116632932 116633218 -65782024 - AluSx SINE Alu -33 279 1 2076 146 3 13 chr6 116633957 116634272 -65780970 + AluSx SINE Alu 1 312 0 924 193 0 0 chr6 116634354 116634515 -65780727 - AluSg/x SINE Alu -3 309 149 1510 95 0 5 chr6 116634515 116634715 -65780527 - AluSx SINE Alu -113 199 1 489 175 61 26 chr6 116635183 116635297 -65779945 - MIR SINE MIR -113 149 32 457 308 128 0 chr6 116635320 116635492 -65779750 - MIR SINE MIR -57 205 12 231 216 0 0 chr6 116635736 116635787 -65779455 - MIR3 SINE MIR -52 156 106 26 30 0 0 chr6 116636383 116636416 -65778826 + GC_rich Low_complexity Low_complexity 1 33 0 719 154 183 29 chr6 116636896 116637016 -65778226 + MER3 DNA MER1_type 1 101 -108 1757 120 46 11 chr6 116637016 116637299 -65777943 + AluSx SINE Alu 1 293 -19 719 154 183 29 chr6 116637299 116637353 -65777889 + MER3 DNA MER1_type 101 202 -7 305 284 11 0 chr6 116637370 116637458 -65777784 + MER81 DNA DNA 5 93 -21 625 233 8 15 chr6 116637772 116637905 -65777337 - FLAM_A SINE Alu -1 132 1 2071 88 91 0 chr6 116638341 116638615 -65776627 + AluSx SINE Alu 1 299 -13 553 238 75 12 chr6 116638887 116639047 -65776195 + L1MC4 LINE L1 6450 6619 -1423 745 200 0 7 chr6 116639047 116639182 -65776060 + MER2 DNA MER2_type 2 135 -210 620 192 58 113 chr6 116639210 116639356 -65775886 + MER2 DNA MER2_type 118 270 -75 335 43 159 43 chr6 116639356 116639425 -65775817 - L1MB3 LINE L1 -1 6182 6106 620 192 58 113 chr6 116639425 116639448 -65775794 + MER2 DNA MER2_type 270 293 -52 771 211 0 0 chr6 116639448 116639581 -65775661 - FLAM_C SINE Alu 0 133 1 620 192 58 113 chr6 116639581 116639650 -65775592 + MER2 DNA MER2_type 293 344 -1 1613 239 69 17 chr6 116639711 116640568 -65774674 + L1MC3 LINE L1 6588 7770 -222 8998 155 154 9 chr6 116640949 116642778 -65772464 - L1PBa LINE L1 -4765 2098 6 515 81 46 0 chr6 116642859 116642946 -65772296 + LTR37B LTR ERV1 378 468 0 564 304 16 27 chr6 116643049 116643233 -65772009 + L2 LINE L2 2635 2816 -498 715 219 122 10 chr6 116643243 116643439 -65771803 + L2 LINE L2 3087 3304 -9 660 346 10 38 chr6 116643454 116643746 -65771496 - L2 LINE L2 -1948 1366 1083 540 288 29 6 chr6 116643773 116643943 -65771299 + L2 LINE L2 219 392 -2922 1744 165 24 20 chr6 116644653 116644950 -65770292 - AluJo SINE Alu -14 298 1 492 226 121 8 chr6 116644963 116645087 -65770155 + MLT1J LTR MaLR 1 138 -373 2166 136 0 0 chr6 116645162 116645464 -65769778 - AluSx SINE Alu -8 304 3 257 186 68 17 chr6 116645587 116645646 -65769596 + MLT1J1 LTR MaLR 364 425 -21 584 208 103 65 chr6 116645666 116645825 -65769417 - HAL1 LINE L1 -1291 1216 1065 2218 100 0 0 chr6 116645825 116646105 -65769137 - AluSx SINE Alu -7 305 26 584 208 103 65 chr6 116646105 116646166 -65769076 - HAL1 LINE L1 -1442 1065 1008 2275 122 0 0 chr6 116646166 116646477 -65768765 - AluSx SINE Alu -1 311 1 584 208 103 65 chr6 116646477 116646630 -65768612 - HAL1 LINE L1 -1499 1008 748 933 193 6 33 chr6 116646631 116646812 -65768430 + MER20 DNA MER1_type 1 176 -43 1150 286 130 20 chr6 116646815 116647322 -65767920 - HAL1 LINE L1 -1796 711 149 680 115 0 123 chr6 116647323 116647381 -65767861 - FLAM_A SINE Alu -188 123 87 2353 68 0 4 chr6 116647381 116647686 -65767556 + AluY SINE Alu 1 304 0 680 115 0 123 chr6 116647686 116647756 -65767486 - FLAM_A SINE Alu -224 87 10 404 225 123 0 chr6 116647766 116647904 -65767338 - HAL1 LINE L1 -2352 155 1 199 359 71 47 chr6 116647912 116648082 -65767160 + L2 LINE L2 3095 3268 -4 4966 152 72 78 chr6 116648640 116649410 -65765832 + ERVL-B1 LTR ERVL 4740 5504 -260 2310 92 0 20 chr6 116649410 116649716 -65765526 + AluSp SINE Alu 1 300 -13 4966 152 72 78 chr6 116649716 116649976 -65765266 + ERVL-B1 LTR ERVL 5504 5764 0 1470 208 101 48 chr6 116649987 116650405 -65764837 + MLT2B1 LTR ERVL 56 495 -25 2038 113 3 36 chr6 116650473 116650775 -65764467 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 116652042 116652064 -65763178 + AT_rich Low_complexity Low_complexity 1 22 0 2113 122 3 0 chr6 116652064 116652352 -65762890 - AluSq SINE Alu -24 289 1 1945 142 62 92 chr6 116652494 116652917 -65762325 - MER83 LTR ERV1 0 448 39 810 109 0 0 chr6 116652902 116653012 -65762230 - MER83 LTR ERV1 -338 110 1 * 28 48 0 0 chr6 116653328 116653370 -65761872 + AT_rich Low_complexity Low_complexity 1 42 0 994 129 7 0 chr6 116653402 116653542 -65761700 - AluJb SINE Alu -171 141 1 204 125 0 0 chr6 116653983 116654015 -65761227 + (TG)n Simple_repeat Simple_repeat 2 33 0 2435 88 3 0 chr6 116655033 116655340 -65759902 + AluSg SINE Alu 1 308 -2 2425 71 7 0 chr6 116656063 116656359 -65758883 - AluSp SINE Alu -15 298 1 1628 152 12 4 chr6 116656364 116656621 -65758621 - AluJo SINE Alu -19 293 35 2558 191 42 38 chr6 116656735 116656916 -65758326 + L1MC3 LINE L1 5710 5889 -1896 2186 91 0 58 chr6 116656916 116657246 -65757996 + AluY SINE Alu 1 311 0 2558 191 42 38 chr6 116657246 116657666 -65757576 + L1MC3 LINE L1 5889 6313 -1472 5661 151 37 56 chr6 116657670 116657970 -65757272 + L1PB4 LINE L1 4106 4410 -1746 2443 41 41 0 chr6 116657970 116658260 -65756982 + AluY SINE Alu 1 302 -9 5661 151 37 56 chr6 116658260 116658562 -65756680 + L1PB4 LINE L1 4410 4716 -1440 1826 173 3 6 chr6 116658562 116658875 -65756367 + AluJb SINE Alu 1 312 0 5661 151 37 56 chr6 116658875 116659907 -65755335 + L1PB4 LINE L1 4716 5688 -468 2988 158 2 30 chr6 116659953 116660064 -65755178 + L1PB4 LINE L1 5675 5788 -368 2053 86 0 45 chr6 116660064 116660389 -65754853 + AluSg SINE Alu 1 312 0 2988 158 2 30 chr6 116660389 116660769 -65754473 + L1PB4 LINE L1 5788 6155 -1 757 175 24 0 chr6 116660800 116660926 -65754316 + L1MC3 LINE L1 6305 6433 -1352 635 119 37 9 chr6 116660915 116661024 -65754218 + L1MC3 LINE L1 6844 6955 -830 * 1713 99 161 3 chr6 116661036 116661328 -65753914 + MER46B DNA MER2_type 22 234 -2 4112 178 35 9 chr6 116661331 116662100 -65753142 + L1MC3 LINE L1 6965 7753 -32 2125 142 14 79 chr6 116662636 116663053 -65752189 + MLT1B LTR MaLR 1 390 0 1688 128 22 78 chr6 116663282 116663603 -65751639 - AluJo SINE Alu -9 303 1 310 318 0 12 chr6 116663636 116663721 -65751521 - LTR16C LTR ERVL 0 491 408 2308 134 20 51 chr6 116663962 116664371 -65750871 - MLT2C1 LTR ERVL 0 397 2 192 243 43 29 chr6 116664754 116664824 -65750418 - MIR SINE MIR -185 77 7 345 257 192 23 chr6 116664935 116665196 -65750046 + L1MC5 LINE L1 7627 7931 -30 2472 83 0 0 chr6 116665366 116665667 -65749575 - AluSq SINE Alu -12 301 1 2604 45 0 7 chr6 116665900 116666208 -65749034 - AluY SINE Alu -5 306 1 1358 152 0 0 chr6 116666456 116666660 -65748582 - AluJo SINE Alu -108 204 1 1744 104 29 0 chr6 116666840 116667081 -65748161 + AluSq SINE Alu 38 285 -28 1386 106 6 0 chr6 116667081 116667116 -65748126 + AluSx SINE Alu 38 314 0 350 304 116 7 chr6 116667614 116667752 -65747490 + MIR3 SINE MIR 55 207 -1 2094 128 0 0 chr6 116669257 116669563 -65745679 - AluSx SINE Alu -6 306 1 24 0 0 0 chr6 116669659 116669683 -65745559 + AT_rich Low_complexity Low_complexity 1 24 0 860 128 0 0 chr6 116669685 116669810 -65745432 - FLAM_C SINE Alu -18 125 1 1745 143 3 31 chr6 116670203 116670497 -65744745 + AluJb SINE Alu 1 286 -26 282 29 0 0 chr6 116670498 116670533 -65744709 + (CA)n Simple_repeat Simple_repeat 2 36 0 1189 157 52 162 chr6 116670551 116670971 -65744271 - MLT1A2 LTR MaLR 0 374 1 238 203 68 17 chr6 116671216 116671275 -65743967 + LTR67 LTR ERVL 96 157 -400 274 184 113 95 chr6 116671531 116671612 -65743630 + L1MC5 LINE L1 7744 7822 -139 2044 122 3 0 chr6 116671612 116671908 -65743334 + AluSq SINE Alu 1 297 -16 274 184 113 95 chr6 116671908 116671994 -65743248 + L1MC5 LINE L1 7822 7914 -47 1723 160 33 16 chr6 116672374 116672681 -65742561 + AluJb SINE Alu 1 312 0 2111 117 0 3 chr6 116673310 116673617 -65741625 + AluSx SINE Alu 1 306 -6 1888 128 3 64 chr6 116674280 116674608 -65740634 - AluSx SINE Alu -4 308 1 351 0 0 0 chr6 116677723 116677762 -65737480 + (TG)n Simple_repeat Simple_repeat 1 39 0 375 60 0 0 chr6 116677762 116677812 -65737430 + (GA)n Simple_repeat Simple_repeat 2 51 0 237 108 0 0 chr6 116679013 116679050 -65736192 + (TG)n Simple_repeat Simple_repeat 1 37 0 270 164 0 0 chr6 116679728 116679783 -65735459 + GA-rich Low_complexity Low_complexity 1 55 0 34 72 0 0 chr6 116680099 116680168 -65735074 + GC_rich Low_complexity Low_complexity 1 69 0 180 0 0 0 chr6 116680279 116680299 -65734943 + (T)n Simple_repeat Simple_repeat 1 20 0 264 59 0 0 chr6 116682393 116682427 -65732815 + (A)n Simple_repeat Simple_repeat 1 34 0 356 248 178 0 chr6 116682944 116683073 -65732169 - MIR3 SINE MIR -29 179 28 450 274 158 0 chr6 116683506 116683696 -65731546 - L2 LINE L2 -371 2943 2724 240 328 98 16 chr6 116683694 116683816 -65731426 + L2 LINE L2 3140 3271 -1 * 1024 161 103 118 chr6 116683973 116684040 -65731202 + MER2 DNA MER2_type 1 67 -277 2060 125 0 0 chr6 116684040 116684329 -65730913 + AluSx SINE Alu 1 289 -23 1024 161 103 118 chr6 116684329 116684610 -65730632 + MER2 DNA MER2_type 67 344 0 346 321 61 30 chr6 116684646 116684811 -65730431 + MIR SINE MIR 20 189 -73 201 147 0 0 chr6 116685380 116685414 -65729828 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr6 116687002 116687025 -65728217 + AT_rich Low_complexity Low_complexity 1 23 0 239 292 56 0 chr6 116687256 116687328 -65727914 - MER91 DNA MER1_type 0 140 65 1807 137 46 3 chr6 116687466 116687751 -65727491 - AluSq SINE Alu -16 297 1 643 176 74 85 chr6 116687801 116687977 -65727265 + MIR SINE MIR 89 262 0 595 311 84 9 chr6 116688089 116688314 -65726928 + MIR SINE MIR 20 261 -1 280 262 0 16 chr6 116688651 116688712 -65726530 + L2 LINE L2 3149 3208 -64 193 189 0 0 chr6 116689022 116689059 -65726183 - L2 LINE L2 -6 3266 3230 2352 118 0 26 chr6 116689059 116689405 -65725837 - MER1B DNA MER1_type 0 337 1 206 62 31 0 chr6 116690111 116690143 -65725099 + (GA)n Simple_repeat Simple_repeat 2 34 0 2212 150 31 19 chr6 116690250 116690609 -65724633 + THE1B LTR MaLR 1 363 -1 1625 205 21 37 chr6 116691238 116691614 -65723628 - MLT1A2 LTR MaLR -4 370 1 4693 210 61 61 chr6 116691615 116692825 -65722417 - MLT1A2-int LTR MaLR -1 1370 157 2090 116 3 0 chr6 116692825 116693127 -65722115 + AluSx SINE Alu 1 303 -9 4693 210 61 61 chr6 116693127 116693203 -65722039 - MLT1A2-int LTR MaLR -1214 157 83 1669 142 50 0 chr6 116693208 116693489 -65721753 + AluSx SINE Alu 5 299 -13 614 235 7 34 chr6 116693556 116693705 -65721537 - MER5B DNA MER1_type -20 158 14 1996 89 68 3 chr6 116694076 116694369 -65720873 - AluSq SINE Alu -1 312 1 730 157 8 0 chr6 116695007 116695128 -65720114 + L1MB3 LINE L1 6025 6146 -37 21 36 0 0 chr6 116696672 116696700 -65718542 + AT_rich Low_complexity Low_complexity 1 28 0 39 0 0 0 chr6 116697012 116697051 -65718191 + AT_rich Low_complexity Low_complexity 1 39 0 2160 119 0 3 chr6 116697184 116697495 -65717747 - AluSx SINE Alu -2 310 1 581 141 0 141 chr6 116697529 116697678 -65717564 - FLAM_C SINE Alu -5 128 1 1234 250 29 34 chr6 116697800 116698184 -65717058 + L1MC4a LINE L1 5506 5887 -1921 446 191 99 68 chr6 116698380 116698542 -65716700 + MER46A DNA MER2_type 3 169 -67 519 104 0 0 chr6 116698553 116698630 -65716612 + FLAM_C SINE Alu 64 140 -3 1413 194 17 17 chr6 116699283 116699449 -65715793 - AluJo SINE Alu -18 294 126 2364 87 0 0 chr6 116699449 116699758 -65715484 - AluSc SINE Alu 0 309 1 1413 194 17 17 chr6 116699758 116699885 -65715357 - AluJo SINE Alu -185 127 1 265 145 0 97 chr6 116699944 116700006 -65715236 + MLT1J LTR MaLR 1 56 -455 534 267 64 23 chr6 116700064 116700412 -65714830 + MLT1L LTR MaLR 161 584 -31 253 246 43 14 chr6 116700433 116700502 -65714740 - MER5B DNA MER1_type -100 78 8 1705 148 3 26 chr6 116700513 116700816 -65714426 - AluJb SINE Alu -16 296 1 21 36 0 0 chr6 116700816 116700844 -65714398 + AT_rich Low_complexity Low_complexity 1 28 0 4283 161 20 29 chr6 116700849 116701423 -65713819 + L1MB7 LINE L1 5394 5972 -212 1698 155 0 14 chr6 116701423 116701707 -65713535 + AluJb SINE Alu 1 280 -32 504 0 0 0 chr6 116701709 116701765 -65713477 + (TAAAA)n Simple_repeat Simple_repeat 2 57 0 4283 161 20 29 chr6 116701765 116701977 -65713265 + L1MB7 LINE L1 5973 6176 -8 2088 103 0 0 chr6 116701978 116702293 -65712949 + AluSg SINE Alu 1 315 0 525 247 25 32 chr6 116702601 116702759 -65712483 + MIR SINE MIR 103 259 -3 181 276 197 0 chr6 116703345 116703421 -65711821 - MIR SINE MIR -119 143 53 461 164 0 0 chr6 116703866 116703939 -65711303 + AluSq/x SINE Alu 61 133 -179 259 250 13 13 chr6 116704285 116704393 -65710849 + CT-rich Low_complexity Low_complexity 1 108 0 369 0 0 0 chr6 116705200 116705241 -65710001 + (TG)n Simple_repeat Simple_repeat 1 41 0 222 37 0 0 chr6 116705240 116705267 -65709975 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 1499 179 11 11 chr6 116705270 116705543 -65709699 - AluJo SINE Alu -39 273 1 344 129 5 46 chr6 116705771 116705988 -65709254 + AluJo SINE Alu 1 298 -2 1911 131 3 0 chr6 116706021 116706327 -65708915 - AluSx SINE Alu 0 307 1 2077 106 0 38 chr6 116706354 116706674 -65708568 + AluSg1 SINE Alu 1 308 -1 1927 142 64 53 chr6 116707624 116707733 -65707509 + MLT2D LTR ERVL 1 107 -307 1401 191 53 0 chr6 116707733 116707897 -65707345 - AluJo SINE Alu -14 298 111 210 37 0 0 chr6 116707897 116707924 -65707318 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1401 191 53 0 chr6 116707924 116708042 -65707200 - AluJo SINE Alu -201 111 1 1927 142 64 53 chr6 116708042 116708292 -65706950 + MLT2D LTR ERVL 107 364 -50 280 182 0 0 chr6 116708313 116708368 -65706874 - L1MC4 LINE L1 -1340 6702 6648 259 218 13 26 chr6 116708368 116708446 -65706796 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 345 103 86 0 chr6 116708446 116708504 -65706738 + MLT2D LTR ERVL 453 515 0 280 330 72 79 chr6 116708539 116708845 -65706397 + L1ME3A LINE L1 366 669 -5747 2089 93 0 28 chr6 116708845 116709167 -65706075 + AluSq SINE Alu 1 314 0 280 330 72 79 chr6 116709167 116709468 -65705774 + L1ME3A LINE L1 669 970 -5446 751 238 143 76 chr6 116709471 116709799 -65705443 + L1ME3A LINE L1 891 1196 -5305 1850 157 7 0 chr6 116709799 116710098 -65705144 - AluSx SINE Alu -11 301 1 751 238 143 76 chr6 116710098 116710437 -65704805 + L1ME3A LINE L1 1196 1639 -4862 916 194 0 0 chr6 116710444 116710614 -65704628 + FRAM SINE Alu 1 169 -7 1753 127 3 18 chr6 116710671 116710955 -65704287 - AluJb SINE Alu -11 301 22 311 290 19 75 chr6 116711004 116711111 -65704131 + L1ME3A LINE L1 1721 1821 -4786 999 113 0 0 chr6 116711111 116711252 -65703990 + FRAM SINE Alu 19 159 -17 359 203 52 75 chr6 116711263 116711397 -65703845 + L1ME3A LINE L1 1722 1848 -4578 1944 144 0 0 chr6 116711399 116711691 -65703551 + AluSx SINE Alu 1 292 -20 312 131 0 0 chr6 116711692 116711742 -65703500 - Alu SINE Alu -259 43 1 22 0 0 0 chr6 116711742 116711764 -65703478 + AT_rich Low_complexity Low_complexity 1 22 0 352 304 116 45 chr6 116711804 116712185 -65703057 + L1ME3A LINE L1 1982 2389 -4037 363 249 124 37 chr6 116712190 116712431 -65702811 + L1ME3A LINE L1 2411 2672 -3754 1756 148 17 3 chr6 116712502 116712792 -65702450 - AluJo SINE Alu -18 294 1 1048 265 37 80 chr6 116712811 116713212 -65702030 + L1ME3A LINE L1 4773 5190 -1236 2198 75 0 29 chr6 116713212 116713520 -65701722 + AluY SINE Alu 1 299 -12 1048 265 37 80 chr6 116713520 116713547 -65701695 + L1ME3A LINE L1 5190 5217 -1209 2055 113 10 0 chr6 116713547 116713848 -65701394 - AluSx SINE Alu -6 306 3 1048 265 37 80 chr6 116713848 116714253 -65700989 + L1ME3A LINE L1 5217 5571 -855 198 0 0 0 chr6 116714295 116714317 -65700925 + (TC)n Simple_repeat Simple_repeat 1 22 0 2071 125 7 0 chr6 116714324 116714619 -65700623 - AluSx SINE Alu -15 297 1 810 224 24 10 chr6 116714620 116714825 -65700417 + AluJo SINE Alu 105 312 0 1420 267 54 40 chr6 116714827 116715476 -65699766 + L1ME3A LINE L1 5570 6227 -223 2093 113 7 0 chr6 116715769 116716062 -65699180 + AluSx SINE Alu 1 295 -17 2085 124 0 0 chr6 116716164 116716463 -65698779 + AluSx SINE Alu 1 299 -13 1794 118 48 4 chr6 116716825 116717097 -65698145 + AluSx SINE Alu 1 284 -28 1398 121 0 5 chr6 116716907 116717097 -65698145 + AluSg/x SINE Alu 94 332 0 451 0 0 0 chr6 116717097 116717147 -65698095 + (TAAA)n Simple_repeat Simple_repeat 2 128 0 180 159 80 136 chr6 116718450 116718538 -65696704 + L2 LINE L2 1352 1434 -1880 21 0 0 0 chr6 116719305 116719326 -65695916 + GC_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 116719381 116719407 -65695835 + GC_rich Low_complexity Low_complexity 1 26 0 35 0 0 0 chr6 116719614 116719649 -65695593 + GC_rich Low_complexity Low_complexity 1 35 0 339 311 134 12 chr6 116722691 116722855 -65692387 + MIR3 SINE MIR 21 204 -4 219 258 81 0 chr6 116723136 116723198 -65692044 - L2 LINE L2 -1 3271 3205 225 250 77 0 chr6 116723623 116723675 -65691567 - L2 LINE L2 -1 3312 3257 243 0 0 0 chr6 116723771 116723798 -65691444 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 218 271 43 43 chr6 116724130 116724200 -65691042 - MIR SINE MIR -180 82 13 221 239 294 18 chr6 116724434 116724543 -65690699 + L2 LINE L2 3175 3313 0 356 252 87 0 chr6 116724927 116725030 -65690212 - MIR SINE MIR -64 144 33 332 310 60 0 chr6 116725086 116725186 -65690056 - L2 LINE L2 -5 3267 3162 26 50 0 0 chr6 116728286 116728326 -65686916 + GC_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr6 116731388 116731425 -65683817 + GC_rich Low_complexity Low_complexity 1 37 0 294 282 14 0 chr6 116732971 116733042 -65682200 + CT-rich Low_complexity Low_complexity 1 72 0 276 310 113 14 chr6 116737813 116737955 -65677287 + MIR3 SINE MIR 24 179 -29 391 292 60 42 chr6 116738511 116738679 -65676563 - MER5A DNA MER1_type 0 189 19 21 57 0 0 chr6 116740887 116740922 -65674320 + AT_rich Low_complexity Low_complexity 1 35 0 369 0 0 0 chr6 116741097 116741138 -65674104 + (TG)n Simple_repeat Simple_repeat 2 42 0 2310 98 3 22 chr6 116742779 116743097 -65672145 - AluSx SINE Alu 0 312 1 2521 65 0 16 chr6 116743560 116743870 -65671372 + AluY SINE Alu 1 305 -6 1916 124 0 73 chr6 116743992 116744160 -65671082 - AluJo SINE Alu -21 291 155 2413 97 0 0 chr6 116744160 116744460 -65670782 - AluSg SINE Alu -9 301 2 1916 124 0 73 chr6 116744460 116744605 -65670637 - AluJo SINE Alu -157 155 1 816 113 0 57 chr6 116744830 116744971 -65670271 + FLAM_C SINE Alu 11 143 0 2077 122 3 25 chr6 116745514 116745833 -65669409 + AluSx SINE Alu 1 312 0 435 38 0 0 chr6 116746984 116747037 -65668205 + (CA)n Simple_repeat Simple_repeat 2 54 0 1393 171 88 0 chr6 116747054 116747294 -65667948 - AluJo SINE Alu -51 261 1 237 288 88 53 chr6 116748685 116748855 -65666387 + MIR SINE MIR 81 256 -6 227 200 0 17 chr6 116749644 116749704 -65665538 + T-rich Low_complexity Low_complexity 2 60 0 450 0 0 0 chr6 116750107 116750157 -65665085 + (CA)n Simple_repeat Simple_repeat 2 51 0 307 281 124 40 chr6 116751075 116751324 -65663918 + L1ME3A LINE L1 5679 5948 -222 1862 164 10 3 chr6 116751748 116752046 -65663196 + AluJb SINE Alu 3 302 -10 23 0 0 0 chr6 116752421 116752444 -65662798 + AT_rich Low_complexity Low_complexity 1 23 0 2133 107 10 29 chr6 116752650 116752959 -65662283 - AluSx SINE Alu -9 303 1 1137 273 49 9 chr6 116753211 116753638 -65661604 - L1MC4a LINE L1 -204 5958 5512 34 0 0 0 chr6 116753923 116753957 -65661285 + AT_rich Low_complexity Low_complexity 1 34 0 1591 167 11 14 chr6 116753957 116754232 -65661010 - AluJb SINE Alu -22 290 17 1621 173 3 68 chr6 116754235 116754559 -65660683 - AluJo SINE Alu -9 303 1 365 302 111 17 chr6 116755211 116755383 -65659859 + MIR3 SINE MIR 11 198 -10 804 139 82 0 chr6 116755455 116755577 -65659665 + FLAM_C SINE Alu 3 134 -9 387 148 34 0 chr6 116755581 116755669 -65659573 + GA-rich Low_complexity Low_complexity 1 91 0 743 163 70 70 chr6 116755745 116755862 -65659380 + MER5B DNA MER1_type 7 126 -52 2239 100 0 29 chr6 116755862 116756173 -65659069 - AluY SINE Alu -9 302 1 743 163 70 70 chr6 116756173 116756227 -65659015 + MER5B DNA MER1_type 125 178 0 2156 134 0 3 chr6 116757208 116757507 -65657735 - AluSx SINE Alu -14 298 1 2030 133 0 31 chr6 116757549 116757871 -65657371 - AluSx SINE Alu 0 312 1 405 286 143 19 chr6 116757916 116758182 -65657060 - L1ME4a LINE L1 -83 6038 5740 266 330 119 0 chr6 116758255 116758373 -65656869 - MER5A DNA MER1_type -57 132 1 2144 100 10 20 chr6 116758534 116758834 -65656408 + AluSx SINE Alu 1 297 -15 257 180 0 16 chr6 116758834 116758895 -65656347 + (TA)n Simple_repeat Simple_repeat 1 60 0 315 0 0 0 chr6 116758895 116758930 -65656312 + (TG)n Simple_repeat Simple_repeat 2 36 0 912 196 23 12 chr6 116758948 116759121 -65656121 + FRAM SINE Alu 2 176 0 5435 134 119 45 chr6 116759890 116761068 -65654174 - MER52C LTR ERV1 0 1278 14 1913 171 0 0 chr6 116761237 116761546 -65653696 - AluJo SINE Alu -3 309 1 773 91 0 0 chr6 116761977 116762076 -65653166 - AluSp/q SINE Alu -30 283 185 287 157 0 0 chr6 116762092 116762143 -65653099 - AluJ/FLAM SINE Alu -208 94 44 951 152 24 24 chr6 116762210 116762374 -65652868 - AluJb SINE Alu -18 294 131 318 200 25 50 chr6 116762720 116762800 -65652442 + L1ME3 LINE L1 5821 5898 -270 207 327 0 0 chr6 116762961 116763016 -65652226 + MIR3 SINE MIR 140 194 -14 2371 79 14 0 chr6 116763059 116763350 -65651892 + AluSg SINE Alu 1 295 -15 920 145 76 138 chr6 116763408 116763514 -65651728 + L1MD3 LINE L1 7694 7805 -190 815 122 0 53 chr6 116763514 116763645 -65651597 + FLAM_C SINE Alu 1 124 -9 920 145 76 138 chr6 116763645 116763721 -65651521 + L1MD3 LINE L1 7805 7884 -111 2291 127 3 0 chr6 116763721 116764029 -65651213 - AluSx SINE Alu -3 309 1 920 145 76 138 chr6 116764029 116764149 -65651093 + L1MD3 LINE L1 7884 7978 -17 2305 118 0 0 chr6 116764149 116764445 -65650797 + AluSq SINE Alu 1 296 -17 580 215 118 7 chr6 116764639 116764774 -65650468 - L1ME4a LINE L1 -2145 5663 5514 707 246 133 15 chr6 116765613 116765816 -65649426 + MIR SINE MIR 24 250 -12 933 214 71 34 chr6 116765988 116766130 -65649112 - Charlie4a DNA MER1_type -1512 449 314 2092 95 29 36 chr6 116766130 116766436 -65648806 + AluSx SINE Alu 1 304 -8 933 214 71 34 chr6 116766436 116766672 -65648570 - Charlie4a DNA MER1_type -1647 314 57 658 131 36 140 chr6 116766815 116767036 -65648206 - L1MCb LINE L1 -4929 1635 1438 358 155 17 0 chr6 116767045 116767103 -65648139 + Tigger2 DNA MER2_type 11 69 -2649 * 2403 102 81 17 chr6 116767093 116767503 -65647739 + Tigger2 DNA MER2_type 2273 2708 -10 3128 214 92 89 chr6 116767513 116768919 -65646323 - L1MCb LINE L1 -4851 1194 30 1824 162 7 0 chr6 116768919 116769209 -65646033 - AluJb SINE Alu -20 292 1 3128 214 92 89 chr6 116769209 116769238 -65646004 - L1MCb LINE L1 -6015 30 3 2436 87 0 6 chr6 116770056 116770367 -65644875 + AluSx SINE Alu 1 309 -3 279 326 97 21 chr6 116770405 116770549 -65644693 + MIR SINE MIR 25 179 -83 192 316 158 13 chr6 116771078 116771236 -65644006 - MIR SINE MIR -2 260 80 1065 176 106 0 chr6 116771636 116771824 -65643418 - MER20 DNA MER1_type -11 208 1 1589 192 3 3 chr6 116771854 116772145 -65643097 - AluJo SINE Alu -21 291 1 2192 109 7 0 chr6 116773948 116774241 -65641001 - AluSx SINE Alu -17 295 1 2173 131 0 7 chr6 116774486 116774792 -65640450 - AluSx SINE Alu -8 304 1 2209 117 7 0 chr6 116774973 116775272 -65639970 + AluSx SINE Alu 1 301 -11 2392 63 3 3 chr6 116776671 116776970 -65638272 + AluY SINE Alu 1 299 -12 1480 160 71 21 chr6 116777262 116777544 -65637698 + AluJo SINE Alu 1 296 -16 1184 153 19 33 chr6 116777684 116777899 -65637343 - AluJb SINE Alu -16 296 85 674 186 65 0 chr6 116777909 116778033 -65637209 - MER20 DNA MER1_type -84 135 4 34 24 0 0 chr6 116778818 116778859 -65636383 + AT_rich Low_complexity Low_complexity 1 41 0 1967 133 24 3 chr6 116779076 116779370 -65635872 + AluSx SINE Alu 1 300 -12 4114 163 60 31 chr6 116779681 116780666 -65634576 + L1MB7 LINE L1 5171 6184 0 982 65 8 0 chr6 116780673 116780796 -65634446 + AluY SINE Alu 1 124 -187 21 57 0 0 chr6 116780796 116780831 -65634411 + AT_rich Low_complexity Low_complexity 1 35 0 1775 166 0 21 chr6 116780927 116781210 -65634032 + AluJo SINE Alu 1 279 -33 198 0 0 0 chr6 116781210 116781232 -65634010 + (CAAT)n Simple_repeat Simple_repeat 4 25 0 273 316 68 8 chr6 116781293 116781426 -65633816 - L1M4 LINE L1 -1222 4924 4784 476 194 9 56 chr6 116781434 116781542 -65633700 + Tigger3(Golem) DNA MER2_type 6 108 -2921 3897 118 87 45 chr6 116781542 116782256 -65632986 + Tigger3(Golem) DNA MER2_type 2285 3028 -1 2128 88 46 11 chr6 116782299 116782584 -65632658 + AluSq SINE Alu 1 295 -18 431 263 68 101 chr6 116782762 116783040 -65632202 + L2 LINE L2 2995 3263 -50 2054 132 6 3 chr6 116783137 116783448 -65631794 - AluJb SINE Alu 0 312 1 811 153 0 0 chr6 116783536 116783660 -65631582 - FLAM_C SINE Alu -19 124 1 273 236 278 35 chr6 116784017 116784161 -65631081 - MER112 DNA MER1_type -6 254 76 2277 101 7 0 chr6 116784743 116785041 -65630201 - AluSq SINE Alu -13 300 1 2057 96 43 17 chr6 116785101 116785403 -65629839 - AluSx SINE Alu -2 310 1 24 0 0 0 chr6 116785641 116785665 -65629577 + AT_rich Low_complexity Low_complexity 1 24 0 672 236 0 0 chr6 116785739 116785866 -65629376 - FLAM_A SINE Alu -10 132 6 2230 106 0 0 chr6 116785882 116786183 -65629059 - AluY SINE Alu -10 301 1 2325 87 3 3 chr6 116786604 116786913 -65628329 + AluY SINE Alu 1 309 -2 1991 92 0 104 chr6 116786920 116787257 -65627985 + AluSg SINE Alu 1 302 -8 1761 155 16 44 chr6 116787357 116787673 -65627569 + AluJo SINE Alu 1 307 -5 1455 186 62 4 chr6 116787703 116787977 -65627265 - AluJb SINE Alu -22 290 1 1294 151 81 60 chr6 116789734 116789870 -65625372 + AluJb SINE Alu 1 133 -179 2312 89 10 0 chr6 116789870 116790162 -65625080 + AluSq SINE Alu 1 295 -18 1294 151 81 60 chr6 116790162 116790309 -65624933 + AluJb SINE Alu 133 290 -22 2354 99 0 0 chr6 116790581 116790884 -65624358 + AluSx SINE Alu 1 303 -9 180 111 0 0 chr6 116790978 116791005 -65624237 + (TTTCC)n Simple_repeat Simple_repeat 5 31 0 201 74 0 0 chr6 116791020 116791047 -65624195 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 845 142 0 0 chr6 116791056 116791176 -65624066 - FLAM_C SINE Alu -13 120 1 412 159 0 0 chr6 116791187 116791256 -65623986 - AluSp/q SINE Alu -9 304 236 276 230 69 0 chr6 116792618 116792705 -65622537 - FRAM SINE Alu -26 140 48 2064 76 73 4 chr6 116792713 116792988 -65622254 - AluSg SINE Alu -16 294 1 676 186 222 43 chr6 116792995 116793274 -65621968 - L1MC4 LINE L1 -411 7631 7303 328 286 121 0 chr6 116795047 116795138 -65620104 - MER5B DNA MER1_type -76 102 1 1578 85 0 0 chr6 116795142 116795341 -65619901 + AluSg/x SINE Alu 73 271 -41 202 172 31 62 chr6 116795829 116795874 -65619368 + (TA)n Simple_repeat Simple_repeat 2 47 -16 2102 113 7 0 chr6 116795874 116796178 -65619064 + AluSx SINE Alu 1 306 0 202 172 31 62 chr6 116796178 116796195 -65619047 + (TA)n Simple_repeat Simple_repeat 47 63 0 27 49 0 0 chr6 116796290 116796331 -65618911 + AT_rich Low_complexity Low_complexity 1 41 0 279 355 21 0 chr6 116796385 116796478 -65618764 + MIR SINE MIR 4 98 -164 302 226 214 0 chr6 116796535 116796619 -65618623 - L1ME LINE L1 -462 5659 5558 373 304 118 34 chr6 116796805 116797117 -65618125 + MLT1G1 LTR MaLR 237 590 0 1939 136 28 0 chr6 116797217 116797504 -65617738 + AluSx SINE Alu 1 295 -17 764 165 9 0 chr6 116797806 116797921 -65617321 + FLAM_C SINE Alu 2 117 -26 21 0 0 0 chr6 116797934 116797955 -65617287 + AT_rich Low_complexity Low_complexity 1 21 0 2760 10 0 16 chr6 116797982 116798291 -65616951 - AluYa5 SINE Alu -7 304 1 2157 110 3 13 chr6 116799107 116799407 -65615835 + AluSq SINE Alu 1 297 -16 1911 158 6 19 chr6 116799419 116799735 -65615507 + AluJb SINE Alu 1 312 0 181 277 21 0 chr6 116799910 116799957 -65615285 - L2 LINE L2 -553 2761 2714 719 169 0 66 chr6 116800087 116800223 -65615019 + FLAM_A SINE Alu 1 127 -6 2079 134 3 7 chr6 116800500 116800806 -65614436 - AluSx SINE Alu -7 305 1 340 316 43 8 chr6 116800834 116800958 -65614284 + MIR SINE MIR 16 146 -84 670 169 119 8 chr6 116800958 116801076 -65614166 + FLAM_C SINE Alu 2 132 -1 340 316 43 8 chr6 116801076 116801098 -65614144 + MIR SINE MIR 146 166 -64 347 248 75 45 chr6 116801220 116801353 -65613889 - MIR SINE MIR -121 141 5 314 259 45 22 chr6 116801631 116801812 -65613430 + L1M4b LINE L1 11 507 -6348 2289 109 0 0 chr6 116801818 116802122 -65613120 - AluSq SINE Alu -9 304 1 2316 101 0 10 chr6 116802465 116802773 -65612469 + AluSg SINE Alu 2 306 -4 2119 233 90 41 chr6 116802893 116802977 -65612265 + L1M4b LINE L1 1030 1108 -5851 905 168 0 0 chr6 116802977 116803108 -65612134 + FLAM_C SINE Alu 1 131 -2 2119 233 90 41 chr6 116803108 116804166 -65611076 + L1M4b LINE L1 1108 2204 -4755 1751 216 216 12 chr6 116804166 116804666 -65610576 + MLT1E1 LTR MaLR 2 603 -51 995 191 17 17 chr6 116804700 116804873 -65610369 - FAM SINE Alu -2 173 1 269 164 30 15 chr6 116804873 116804935 -65610307 + MLT1E1 LTR MaLR 562 624 0 310 203 41 138 chr6 116804935 116805058 -65610184 + L1M4b LINE L1 2350 2460 -4678 508 235 0 0 chr6 116805058 116805160 -65610082 + U13 snRNA snRNA 1 102 -2 246 214 29 14 chr6 116805182 116805252 -65609990 + L1M4b LINE L1 2445 2515 -4623 1840 153 7 7 chr6 116805252 116805539 -65609703 + AluSx SINE Alu 1 287 -25 520 207 26 0 chr6 116805542 116805658 -65609584 + L1M4b LINE L1 3073 3191 -3766 1792 176 7 10 chr6 116805757 116806058 -65609184 - AluJb SINE Alu -12 300 1 733 103 35 17 chr6 116806089 116806205 -65609037 - L1MB3 LINE L1 -10 6173 6056 1867 123 58 10 chr6 116806251 116806543 -65608699 - AluSx SINE Alu -6 306 1 7454 53 24 3 chr6 116806556 116807883 -65607359 - L1PA8 LINE L1 -13 6159 4815 2106 108 13 29 chr6 116807917 116808224 -65607018 - AluSx SINE Alu -1 311 10 784 191 8 0 chr6 116808330 116808456 -65606786 - FRAM SINE Alu -30 146 20 1869 131 105 14 chr6 116808572 116808916 -65606326 + THE1C LTR MaLR 1 375 0 1369 163 42 101 chr6 116808979 116809285 -65605957 - AluJb SINE Alu -24 288 1 946 101 14 36 chr6 116809419 116809558 -65605684 + AluJo SINE Alu 1 136 -176 29 28 0 0 chr6 116809577 116809613 -65605629 + AT_rich Low_complexity Low_complexity 1 36 0 238 270 117 36 chr6 116809844 116809955 -65605287 + L2 LINE L2 3141 3260 -12 1162 156 0 0 chr6 116810368 116810528 -65604714 - FRAM SINE Alu -6 160 1 26 0 0 0 chr6 116810595 116810621 -65604621 + AT_rich Low_complexity Low_complexity 1 26 0 688 219 0 32 chr6 116810680 116810803 -65604439 + FLAM_A SINE Alu 3 121 -12 1404 101 0 0 chr6 116810867 116811046 -65604196 + AluSc SINE Alu 123 301 -8 1961 146 0 14 chr6 116811519 116811814 -65603428 - AluSx SINE Alu -21 291 1 655 178 185 0 chr6 116811895 116812041 -65603201 - MER58A DNA MER1_type -6 218 46 250 246 140 0 chr6 116813023 116813080 -65602162 + MLT1J LTR MaLR 82 146 -365 1852 150 29 10 chr6 116813392 116813698 -65601544 + AluSx SINE Alu 1 312 0 557 159 23 0 chr6 116814004 116814092 -65601150 + 5S rRNA rRNA 1 90 -31 1508 142 9 0 chr6 116814316 116814541 -65600701 - AluSp SINE Alu -86 227 1 688 186 35 0 chr6 116814857 116814970 -65600272 + FLAM_A SINE Alu 6 122 -20 180 0 0 0 chr6 116814997 116815017 -65600225 + (T)n Simple_repeat Simple_repeat 1 20 0 2296 93 0 7 chr6 116815447 116815747 -65599495 + AluY SINE Alu 1 298 -13 1244 153 14 23 chr6 116815862 116816078 -65599164 + AluJb SINE Alu 77 290 -22 365 286 105 9 chr6 116816078 116816183 -65599059 + MIR SINE MIR 24 138 -124 * 492 343 102 50 chr6 116816170 116816572 -65598670 - L2 LINE L2 -18 3254 2832 1669 180 10 13 chr6 116816943 116817254 -65597988 - AluJb SINE Alu -2 310 1 1883 157 0 3 chr6 116817551 116817845 -65597397 + AluJb SINE Alu 1 293 -19 426 253 161 23 chr6 116818058 116818232 -65597010 - MIR SINE MIR -18 244 47 220 261 160 25 chr6 116818348 116818467 -65596775 - L3b LINE CR1 -321 1262 1128 1521 186 24 7 chr6 116818840 116819130 -65596112 + AluJo SINE Alu 1 295 -17 2455 94 0 0 chr6 116819287 116819594 -65595648 + AluSc SINE Alu 1 307 -2 2460 81 0 0 chr6 116819781 116820079 -65595163 + AluSg SINE Alu 1 298 -12 1705 174 10 7 chr6 116820114 116820412 -65594830 - AluJb SINE Alu -13 299 1 2244 90 7 0 chr6 116820836 116821135 -65594107 - AluSp SINE Alu -12 301 1 471 89 89 44 chr6 116821273 116821363 -65593879 + L1MB2 LINE L1 6068 6161 -10 278 222 0 50 chr6 116822508 116822607 -65592635 + (CCG)n Simple_repeat Simple_repeat 1 94 0 2348 84 7 3 chr6 116823480 116823779 -65591463 + AluSg SINE Alu 1 300 -10 638 191 0 16 chr6 116824001 116824127 -65591115 - FLAM_C SINE Alu -17 126 3 2338 99 3 6 chr6 116824172 116824485 -65590757 - AluSx SINE Alu 0 312 1 2563 66 3 0 chr6 116824540 116824843 -65590399 + AluSp SINE Alu 1 304 -9 187 330 155 26 chr6 116824890 116825084 -65590158 - L2 LINE L2 0 3313 3095 313 293 113 42 chr6 116825447 116825829 -65589413 + L1MC/D LINE L1 4184 4592 -1554 2429 76 0 3 chr6 116825898 116826200 -65589042 - AluSg SINE Alu -9 301 1 2349 76 7 7 chr6 116826233 116826534 -65588708 + AluSq SINE Alu 1 301 -12 478 284 122 27 chr6 116826900 116827235 -65588007 + L1MC/D LINE L1 5388 5754 -2054 1565 180 80 0 chr6 116827255 116827544 -65587698 + AluJo SINE Alu 1 312 0 253 154 0 0 chr6 116827684 116827723 -65587519 - tRNA-Glu-GAG tRNA tRNA -36 39 1 2174 117 3 7 chr6 116827804 116828103 -65587139 + AluSx SINE Alu 1 298 -14 1386 89 0 0 chr6 116828446 116828615 -65586627 + AluSp SINE Alu 134 302 -11 2072 146 0 0 chr6 116828627 116828915 -65586327 + AluSx SINE Alu 1 288 -24 3189 126 47 25 chr6 116829064 116829466 -65585776 - MER4B LTR ERV1 0 779 191 2471 70 0 3 chr6 116829466 116829764 -65585478 - AluY SINE Alu -14 297 1 3189 126 47 25 chr6 116829764 116829960 -65585282 - MER4B LTR ERV1 -588 191 1 2212 109 10 10 chr6 116830189 116830501 -65584741 - AluSq SINE Alu -1 312 1 217 211 123 44 chr6 116830514 116830628 -65584614 + L2 LINE L2 1332 1454 -1860 230 0 0 32 chr6 116830807 116830838 -65584404 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 6876 60 6 44 chr6 116830839 116832550 -65582692 + SVA Other Other 50 1381 -5 4194 109 33 46 chr6 116832564 116833016 -65582226 + L1PA13 LINE L1 5476 5932 -231 2266 107 10 0 chr6 116833016 116833315 -65581927 + AluSq SINE Alu 1 302 -11 4194 109 33 46 chr6 116833315 116833365 -65581877 + L1PA13 LINE L1 5932 5981 -182 2522 47 7 7 chr6 116833365 116833662 -65581580 + AluY SINE Alu 1 297 -14 4194 109 33 46 chr6 116833662 116833855 -65581387 + L1PA13 LINE L1 5981 6163 0 519 117 0 55 chr6 116833982 116834145 -65581097 + (TA)n Simple_repeat Simple_repeat 2 155 0 687 258 73 17 chr6 116834230 116834463 -65580779 - L1MC/D LINE L1 -1996 5812 5567 432 101 58 0 chr6 116834470 116834539 -65580703 + LTR23 LTR ERV1 1 73 -364 1804 157 3 39 chr6 116834556 116834868 -65580374 - AluJb SINE Alu -10 302 2 1869 137 53 17 chr6 116835015 116835136 -65580106 + AluSx SINE Alu 1 116 -196 2387 57 17 27 chr6 116835136 116835437 -65579805 + AluY SINE Alu 1 298 -13 1869 137 53 17 chr6 116835437 116835614 -65579628 + AluSx SINE Alu 116 310 -2 929 135 40 0 chr6 116835618 116835766 -65579476 + LTR23 LTR ERV1 74 227 -210 955 183 6 0 chr6 116835766 116835935 -65579307 - AluJo SINE Alu -7 305 136 829 118 38 143 chr6 116835935 116836013 -65579229 + LTR23 LTR ERV1 226 311 -126 867 105 0 70 chr6 116836013 116836156 -65579086 + FLAM_C SINE Alu 1 133 0 1384 163 54 32 chr6 116836165 116836470 -65578772 + AluJo SINE Alu 1 311 0 829 118 38 143 chr6 116836470 116836617 -65578625 + LTR23 LTR ERV1 319 437 0 770 189 45 40 chr6 116836706 116836907 -65578335 + MER21B LTR ERV1 549 750 -113 760 183 0 15 chr6 116837315 116837452 -65577790 - AluJo SINE Alu -176 136 2 828 260 0 26 chr6 116837725 116837917 -65577325 + LTR16B LTR ERVL 1 187 -277 1685 158 6 45 chr6 116838271 116838465 -65576777 - AluJo SINE Alu -3 309 130 2417 92 0 0 chr6 116838465 116838759 -65576483 + AluSc SINE Alu 1 294 -15 1685 158 6 45 chr6 116838759 116838875 -65576367 - AluJo SINE Alu -182 130 11 534 194 188 7 chr6 116838896 116839040 -65576202 - MER5A DNA MER1_type -6 183 14 193 250 0 0 chr6 116839200 116839244 -65575998 - L2 LINE L2 -23 3290 3247 1899 142 0 29 chr6 116839309 116839618 -65575624 - AluJo SINE Alu -12 300 1 2148 104 3 42 chr6 116840949 116841256 -65573986 - AluSq SINE Alu -18 295 1 21 0 0 0 chr6 116841259 116841280 -65573962 + AT_rich Low_complexity Low_complexity 1 21 0 806 211 6 0 chr6 116841347 116841518 -65573724 + MIR SINE MIR 73 244 -18 228 111 0 0 chr6 116842490 116842526 -65572716 + (TAA)n Simple_repeat Simple_repeat 1 36 0 198 71 0 0 chr6 116843884 116843912 -65571330 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1598 181 7 21 chr6 116843915 116844203 -65571039 - AluJo SINE Alu -28 284 1 1981 109 91 7 chr6 116844323 116844599 -65570643 - AluSx SINE Alu -13 299 1 29 21 0 21 chr6 116844659 116844677 -65570565 + AT_rich Low_complexity Low_complexity 1 18 -28 2134 122 6 10 chr6 116844677 116844988 -65570254 - AluSx SINE Alu -2 310 1 29 21 0 21 chr6 116844988 116845016 -65570226 + AT_rich Low_complexity Low_complexity 18 46 0 469 158 26 0 chr6 116845016 116845092 -65570150 - AluJ/FLAM SINE Alu -228 84 7 2312 76 0 0 chr6 116845689 116845965 -65569277 + AluSx SINE Alu 1 276 -36 2390 109 0 0 chr6 116846147 116846504 -65568738 + AluSx SINE Alu 1 357 0 2258 112 0 16 chr6 116846506 116846819 -65568423 + AluSg SINE Alu 1 308 -2 1036 143 0 7 chr6 116847106 116847260 -65567982 + FRAM SINE Alu 18 170 -6 189 0 0 0 chr6 116847388 116847409 -65567833 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 817 147 0 0 chr6 116847410 116847526 -65567716 - FLAM_C SINE Alu -23 120 5 264 122 0 0 chr6 116847748 116847789 -65567453 + L1MA8 LINE L1 5575 5615 -556 2076 131 7 13 chr6 116847796 116848101 -65567141 + AluJb SINE Alu 10 312 0 1774 168 26 32 chr6 116848109 116848302 -65566940 + L1MA8 LINE L1 5599 5792 -520 297 0 0 0 chr6 116848302 116848335 -65566907 + (CA)n Simple_repeat Simple_repeat 1 33 0 2148 113 7 0 chr6 116848345 116848638 -65566604 - AluSq SINE Alu -18 295 1 1774 168 26 32 chr6 116848638 116848773 -65566469 + L1MA8 LINE L1 5801 5936 -376 864 134 8 8 chr6 116848810 116848944 -65566298 - AluJo SINE Alu -178 134 1 921 180 12 12 chr6 116848951 116849112 -65566130 - FRAM SINE Alu -15 161 1 620 231 142 51 chr6 116849113 116849424 -65565818 + L1MA8 LINE L1 5928 6266 -25 1333 258 54 36 chr6 116849545 116850142 -65565100 - L2 LINE L2 0 3313 2698 1354 146 32 14 chr6 116850157 116850377 -65564865 - LTR8 LTR ERV1 0 691 468 * 3145 121 48 75 chr6 116850376 116850962 -65564280 - LTR8 LTR ERV1 -120 571 2 1020 277 9 16 chr6 116850963 116851281 -65563961 - L2 LINE L2 -632 2682 2367 2499 75 0 3 chr6 116851347 116851654 -65563588 + AluY SINE Alu 1 306 -5 1625 177 40 0 chr6 116851927 116852204 -65563038 + AluJb SINE Alu 2 289 -23 24 0 0 0 chr6 116852292 116852316 -65562926 + AT_rich Low_complexity Low_complexity 1 24 0 1716 151 18 14 chr6 116852319 116852598 -65562644 + AluJb SINE Alu 1 280 -32 240 35 0 0 chr6 116852598 116852627 -65562615 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 617 139 99 0 chr6 116852627 116852728 -65562514 - FLAM_C SINE Alu -26 117 7 238 228 25 38 chr6 116852815 116852894 -65562348 - MIR SINE MIR -61 201 124 1651 159 53 20 chr6 116852897 116853199 -65562043 + AluJb SINE Alu 1 312 0 764 106 29 0 chr6 116854369 116854473 -65560769 + U6 snRNA snRNA 1 107 0 939 199 0 0 chr6 116854509 116854685 -65560557 + FAM SINE Alu 1 49 0 414 140 0 0 chr6 116854769 116854826 -65560416 + U6 snRNA snRNA 51 107 0 939 199 0 0 chr6 116854862 116855038 -65560204 + FAM SINE Alu 1 49 0 22 0 0 0 chr6 116855119 116855141 -65560101 + AT_rich Low_complexity Low_complexity 1 22 0 309 99 56 14 chr6 116855163 116855234 -65560008 + C-rich Low_complexity Low_complexity 3 76 0 2184 104 7 3 chr6 116855239 116855537 -65559705 - AluSx SINE Alu -13 299 1 1677 136 94 3 chr6 116855548 116855834 -65559408 - AluJo SINE Alu 0 312 1 236 294 165 18 chr6 116857459 116857568 -65557674 + L2 LINE L2 3148 3272 0 23 0 0 0 chr6 116857937 116857960 -65557282 + AT_rich Low_complexity Low_complexity 1 23 0 240 143 36 179 chr6 116858255 116858367 -65556875 - L1MC/D LINE L1 -1944 5864 5769 254 275 292 12 chr6 116858395 116858566 -65556676 - MIR SINE MIR -1 261 43 2185 122 3 3 chr6 116858698 116859010 -65556232 - AluSx SINE Alu 0 312 1 2182 125 0 13 chr6 116859176 116859489 -65555753 + AluJb SINE Alu 1 309 -3 290 272 112 0 chr6 116859549 116859674 -65555568 - MIR SINE MIR -1 261 123 2350 108 0 0 chr6 116859864 116860169 -65555073 - AluSx SINE Alu -7 305 1 2550 78 0 0 chr6 116860582 116860889 -65554353 + AluSx SINE Alu 1 307 -5 739 197 0 0 chr6 116861270 116861402 -65553840 + FLAM_A SINE Alu 11 142 0 2092 126 0 10 chr6 116861757 116862051 -65553191 - AluSq SINE Alu -18 295 5 191 36 36 0 chr6 116862111 116862139 -65553103 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2310 91 0 7 chr6 116862279 116862575 -65552667 - AluSc SINE Alu -15 294 1 1690 127 40 0 chr6 116862724 116862977 -65552265 - MER41A LTR ERV1 -291 263 1 9340 83 25 16 chr6 116862977 116863550 -65551692 - MER41A-int LTR ERV1 -2 5944 5378 2218 105 14 3 chr6 116863550 116863846 -65551396 - AluSx SINE Alu -13 299 1 9340 83 25 16 chr6 116863846 116864568 -65550674 - MER41A-int LTR ERV1 -568 5378 4637 298 209 128 23 chr6 116864569 116864589 -65550653 - FLAM_A SINE Alu -191 111 94 1573 150 4 0 chr6 116864589 116864815 -65550427 - AluSx SINE Alu -85 227 1 771 163 0 22 chr6 116864815 116864950 -65550292 - AluJo/FLAM SINE Alu -170 132 1 298 209 128 23 chr6 116864950 116865014 -65550228 - FLAM_A SINE Alu -207 95 17 1104 122 12 29 chr6 116867001 116867173 -65548069 - AluJb SINE Alu -24 288 120 810 143 0 0 chr6 116867217 116867336 -65547906 - AluJb SINE Alu -193 119 1 1994 149 16 0 chr6 116867499 116867807 -65547435 - AluSq SINE Alu 0 313 1 315 330 50 22 chr6 116867907 116868086 -65547156 - L3 LINE CR1 -146 1431 1248 222 118 0 0 chr6 116868095 116868129 -65547113 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 232 318 54 8 chr6 116868325 116868454 -65546788 - L3 LINE CR1 -396 1181 1047 2236 122 0 10 chr6 116868604 116868915 -65546327 - AluSg SINE Alu -2 308 1 1426 155 4 9 chr6 116869000 116869226 -65546016 - AluJb SINE Alu 0 312 88 1359 221 57 4 chr6 116869230 116869706 -65545536 - L1ME LINE L1 -457 5713 5188 1746 178 0 3 chr6 116869763 116870050 -65545192 - AluJo SINE Alu -22 290 5 21 36 0 0 chr6 116870099 116870127 -65545115 + AT_rich Low_complexity Low_complexity 1 28 0 870 187 0 0 chr6 116870127 116870261 -65544981 - FRAM SINE Alu -22 154 21 250 57 0 0 chr6 116870289 116870324 -65544918 + (TTTA)n Simple_repeat Simple_repeat 2 120 0 2039 122 0 11 chr6 116870324 116870610 -65544632 - AluSx SINE Alu -29 283 1 1588 206 109 16 chr6 116870611 116871053 -65544189 - L1ME LINE L1 -979 5167 4685 639 149 18 9 chr6 116871070 116871184 -65544058 + Charlie5 DNA MER1_type 13 127 -2485 1114 146 53 18 chr6 116871210 116871436 -65543806 + Charlie5 DNA MER1_type 2244 2477 -135 1523 215 42 20 chr6 116871460 116871818 -65543424 - LTR40a LTR ERVL 0 519 154 1671 156 27 0 chr6 116871822 116872174 -65543068 - L1M4 LINE L1 -621 5553 5195 1716 168 3 16 chr6 116872176 116872480 -65542762 - AluSx SINE Alu -10 302 3 296 342 56 31 chr6 116872648 116873024 -65542218 + L2 LINE L2 2721 3107 -165 854 164 0 8 chr6 116873087 116873264 -65541978 - FLAM_A SINE Alu 0 176 1 220 330 10 50 chr6 116873276 116873376 -65541866 + L2 LINE L2 3168 3263 -9 21 21 0 64 chr6 116873435 116873461 -65541781 + AT_rich Low_complexity Low_complexity 1 25 -19 2160 113 0 0 chr6 116873461 116873768 -65541474 - AluSx SINE Alu 0 307 1 21 21 0 64 chr6 116873768 116873787 -65541455 + AT_rich Low_complexity Low_complexity 25 44 0 1593 152 18 70 chr6 116873861 116874189 -65541053 + AluJo SINE Alu 1 311 -1 868 213 0 41 chr6 116874370 116874539 -65540703 - FRAM SINE Alu -4 162 1 230 204 252 19 chr6 116874647 116874750 -65540492 - MLT1L LTR MaLR -332 283 157 942 204 0 5 chr6 116874861 116875047 -65540195 + MIR SINE MIR 68 252 -10 1897 163 3 10 chr6 116875130 116875443 -65539799 - AluJb SINE Alu -1 311 1 2095 117 0 49 chr6 116875536 116875862 -65539380 + AluSq SINE Alu 1 310 -3 1981 118 3 20 chr6 116875994 116876298 -65538944 - AluSx SINE Alu -8 304 6 323 352 46 47 chr6 116876366 116876452 -65538790 + L2 LINE L2 2736 2821 -492 1691 136 9 121 chr6 116876452 116876782 -65538460 - AluSx SINE Alu -9 293 1 323 352 46 47 chr6 116876782 116877017 -65538225 + L2 LINE L2 2821 3059 -254 293 255 235 10 chr6 116877045 116877147 -65538095 - MER5A DNA MER1_type 0 189 65 843 195 71 7 chr6 116877184 116877338 -65537904 - FRAM SINE Alu -2 164 1 1655 168 10 10 chr6 116877369 116877660 -65537582 + AluJb SINE Alu 1 291 -21 2861 10 0 0 chr6 116877703 116878012 -65537230 + AluYa5 SINE Alu 1 309 -2 815 127 61 50 chr6 116878094 116878137 -65537105 - L1MA7 LINE L1 -8 6283 6242 2505 60 3 0 chr6 116878137 116878435 -65536807 - AluY SINE Alu -12 299 1 815 127 61 50 chr6 116878435 116878572 -65536670 - L1MA7 LINE L1 -49 6242 6101 2062 190 63 124 chr6 116878774 116879490 -65535752 - LTR8A LTR ERV1 -22 705 34 180 0 0 0 chr6 116880838 116880858 -65534384 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1508 151 0 119 chr6 116880863 116881182 -65534060 - AluJb SINE Alu -31 281 1 1084 192 0 0 chr6 116881204 116881376 -65533866 - FAM SINE Alu -3 172 1 198 0 0 0 chr6 116881398 116881420 -65533822 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 307 146 0 0 chr6 116881440 116881488 -65533754 - MER68 LTR ERV1 -514 48 1 3614 145 40 2 chr6 116881791 116882370 -65532872 - LTR39 LTR ERV1 -176 607 7 1068 223 53 44 chr6 116882622 116882940 -65532302 - MER21B LTR ERV1 -125 738 418 848 275 42 8 chr6 116883013 116883253 -65531989 - MER21B LTR ERV1 -615 248 1 1412 233 88 70 chr6 116883400 116883494 -65531748 - MLT1J LTR MaLR 0 511 420 1764 133 0 82 chr6 116883494 116883811 -65531431 - AluJo SINE Alu -21 291 1 1412 233 88 70 chr6 116883811 116884215 -65531027 - MLT1J LTR MaLR -91 420 4 1999 135 10 0 chr6 116884975 116885264 -65529978 - AluSx SINE Alu -20 292 1 2160 120 3 7 chr6 116886296 116886596 -65528646 - AluSx SINE Alu -13 299 1 2133 138 0 0 chr6 116887091 116887389 -65527853 - AluSx SINE Alu -14 298 1 1895 149 21 7 chr6 116887391 116887680 -65527562 - AluSx SINE Alu -19 293 1 1498 192 14 14 chr6 116887682 116887974 -65527268 - AluJo SINE Alu -20 292 1 2258 78 42 0 chr6 116888281 116888565 -65526677 + AluSx SINE Alu 1 296 -16 790 177 7 41 chr6 116888570 116888717 -65526525 + FLAM_C SINE Alu 2 143 0 21 0 0 0 chr6 116888758 116888779 -65526463 + AT_rich Low_complexity Low_complexity 1 21 0 2245 177 0 5 chr6 116888953 116889320 -65525922 - MLT1A1 LTR MaLR 0 365 1 202 212 12 35 chr6 116889741 116889826 -65525416 + (TA)n Simple_repeat Simple_repeat 1 83 0 1498 150 4 32 chr6 116889998 116890265 -65524977 - AluJb SINE Alu 0 301 42 341 115 0 16 chr6 116890663 116890724 -65524518 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 809 134 8 0 chr6 116890724 116890843 -65524399 - FLAM_C SINE Alu -23 120 1 2414 88 0 0 chr6 116890905 116891202 -65524040 - AluSx SINE Alu -15 297 1 2583 123 10 30 chr6 116891418 116891779 -65523463 + MSTC LTR MaLR 1 355 -73 2138 111 17 0 chr6 116891779 116892077 -65523165 - AluSg SINE Alu -7 303 1 2583 123 10 30 chr6 116892077 116892112 -65523130 + MSTC LTR MaLR 355 389 -39 180 0 0 0 chr6 116892452 116892472 -65522770 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 356 122 0 0 chr6 116892487 116892536 -65522706 + MSTC LTR MaLR 380 428 0 1735 161 14 0 chr6 116892609 116892920 -65522322 + AluJo SINE Alu 1 315 0 632 211 98 0 chr6 116893664 116893797 -65521445 - MER58A DNA MER1_type 0 146 1 267 263 101 11 chr6 116894039 116894209 -65521033 + L1ME LINE L1 4883 5076 -1070 1634 173 38 3 chr6 116894220 116894509 -65520733 - AluJb SINE Alu -13 299 1 422 262 5 64 chr6 116894584 116894731 -65520511 + L1ME LINE L1 5106 5241 -905 2397 75 3 0 chr6 116894731 116895025 -65520217 + AluSx SINE Alu 1 295 -17 422 262 5 64 chr6 116895025 116895064 -65520178 + L1ME LINE L1 5241 5281 -865 822 155 0 16 chr6 116895064 116895193 -65520049 + FLAM_C SINE Alu 1 127 -16 234 221 44 0 chr6 116895203 116895271 -65519971 + L1ME LINE L1 5263 5333 -837 225 243 95 27 chr6 116895286 116895360 -65519882 + L1ME LINE L1 5733 5811 -353 1881 140 11 0 chr6 116895597 116895907 -65519335 - AluSx SINE Alu 0 314 2 885 163 0 0 chr6 116896013 116896142 -65519100 + FLAM_C SINE Alu 1 129 -4 212 370 101 27 chr6 116896286 116896505 -65518737 + L2 LINE L2 2707 2941 -373 1640 167 85 0 chr6 116896591 116896873 -65518369 - AluSx SINE Alu -6 306 1 248 169 0 108 chr6 116896908 116896973 -65518269 + L2 LINE L2 3214 3271 -1 548 249 80 9 chr6 116898363 116898576 -65516666 - L1MC4 LINE L1 -73 7969 7742 370 94 0 0 chr6 116898580 116898633 -65516609 + MER53 DNA DNA 1 53 -136 619 156 31 0 chr6 116898648 116898744 -65516498 - FLAM_A SINE Alu -26 116 18 832 232 48 0 chr6 116898744 116898912 -65516330 - MER119 DNA MER1_type -384 199 24 331 269 170 14 chr6 116899012 116899153 -65516089 + L2 LINE L2 3109 3271 -1 1920 156 0 0 chr6 116899515 116899804 -65515438 + AluJb SINE Alu 9 297 -15 501 205 94 0 chr6 116899980 116900097 -65515145 - MER103 DNA DNA 0 166 39 809 193 0 0 chr6 116900098 116900238 -65515004 - FLAM_C SINE Alu -3 140 1 355 205 0 39 chr6 116900484 116900562 -65514680 - AluS SINE Alu -3 298 224 248 315 130 0 chr6 116900562 116900670 -65514572 - L1MC/D LINE L1 -2290 5518 5397 1851 152 39 0 chr6 116900758 116901041 -65514201 - AluSx SINE Alu -16 296 3 2015 107 43 0 chr6 116901062 116901342 -65513900 - AluSg SINE Alu -9 301 10 3600 87 34 14 chr6 116901367 116901873 -65513369 - L1MA1 LINE L1 0 6302 5787 2200 92 3 7 chr6 116901971 116902254 -65512988 - AluSx SINE Alu -16 296 15 262 220 133 41 chr6 116902754 116902972 -65512270 - L1M4 LINE L1 -3303 2843 2606 357 342 17 8 chr6 116903135 116903255 -65511987 - MIR SINE MIR -71 137 17 282 269 207 24 chr6 116903542 116903892 -65511350 - LTR33 LTR ERVL -8 513 45 204 200 50 17 chr6 116904531 116904591 -65510651 + (TATAA)n Simple_repeat Simple_repeat 2 63 0 1978 114 59 0 chr6 116904662 116904951 -65510291 - AluSx SINE Alu -6 306 1 1511 151 72 69 chr6 116905602 116905708 -65509534 + AluJo SINE Alu 1 105 -207 2103 109 7 3 chr6 116905708 116906016 -65509226 - AluSx SINE Alu 0 309 1 1511 151 72 69 chr6 116906016 116906212 -65509030 + AluJo SINE Alu 105 305 -7 316 316 150 48 chr6 116906459 116906646 -65508596 - HAL1 LINE L1 -567 1940 1735 258 238 139 0 chr6 116906649 116906750 -65508492 - HAL1 LINE L1 -833 1674 1560 583 171 0 0 chr6 116906764 116906852 -65508390 - FLAM SINE Alu -18 125 38 1463 185 88 0 chr6 116906980 116907240 -65508002 - AluJb SINE Alu -29 283 1 627 286 98 57 chr6 116907246 116907613 -65507629 - HAL1 LINE L1 -1540 967 586 192 395 25 0 chr6 116907619 116907700 -65507542 - MIR SINE MIR -170 92 10 2105 151 35 8 chr6 116907760 116907961 -65507281 - L1MB3 LINE L1 -9 6174 5957 1804 181 0 16 chr6 116907961 116908271 -65506971 - AluJo SINE Alu -7 305 1 2105 151 35 8 chr6 116908271 116908439 -65506803 - L1MB3 LINE L1 -226 5957 5795 28 0 0 0 chr6 116909417 116909445 -65505797 + AT_rich Low_complexity Low_complexity 1 28 0 2424 72 7 0 chr6 116909674 116909981 -65505261 - AluY SINE Alu -2 309 1 2045 151 0 3 chr6 116910805 116911103 -65504139 + AluJb SINE Alu 1 297 -15 1862 166 3 7 chr6 116911237 116911533 -65503709 + AluJb SINE Alu 1 295 -17 1659 106 109 4 chr6 116911544 116911850 -65503392 + AluSx SINE Alu 1 333 0 467 73 0 0 chr6 116911853 116911908 -65503334 + FLAM SINE Alu 63 117 -26 39 22 0 0 chr6 116911912 116911958 -65503284 + AT_rich Low_complexity Low_complexity 1 46 0 2568 157 59 13 chr6 116912519 116912979 -65502263 - MER7C DNA MER2_type -110 492 12 1401 207 43 9 chr6 116912979 116913302 -65501940 - L1M4 LINE L1 -1798 4348 4015 681 163 24 0 chr6 116913321 116913444 -65501798 - L1MB4 LINE L1 -1 6179 6054 315 272 54 0 chr6 116913445 116913537 -65501705 - L1M4 LINE L1 -2045 4101 4005 1969 145 12 80 chr6 116913544 116913957 -65501285 - L1MB3 LINE L1 0 6183 5799 1080 209 98 32 chr6 116913958 116914181 -65501061 + MER2 DNA MER2_type 10 262 -83 1786 168 0 11 chr6 116914181 116914467 -65500775 - AluJb SINE Alu -26 286 4 1080 209 98 32 chr6 116914467 116914558 -65500684 + MER2 DNA MER2_type 262 345 0 2126 150 18 28 chr6 116914561 116914758 -65500484 - L1MB3 LINE L1 -387 5796 5599 2076 152 0 3 chr6 116914758 116915060 -65500182 - AluJo SINE Alu -11 301 1 2126 150 18 28 chr6 116915060 116915262 -65499980 - L1MB3 LINE L1 -584 5599 5401 517 111 111 33 chr6 116915833 116915906 -65499336 - Tigger7 DNA MER2_type 0 2487 2404 2265 109 16 0 chr6 116915906 116916209 -65499033 - AluSq SINE Alu -5 308 1 517 111 111 33 chr6 116916209 116916225 -65499017 - Tigger7 DNA MER2_type -83 2404 2391 * 1222 228 36 8 chr6 116916224 116916474 -65498768 - Tigger7 DNA MER2_type -475 258 2 921 134 0 8 chr6 116916711 116916845 -65498397 - FLAM_C SINE Alu 0 133 1 214 278 0 19 chr6 116916868 116916922 -65498320 + L2 LINE L2 3246 3298 -15 23 54 0 0 chr6 116917220 116917257 -65497985 + AT_rich Low_complexity Low_complexity 1 37 0 227 258 32 108 chr6 116918565 116918658 -65496584 + MER58 DNA MER1_type 1 86 -129 216 158 0 0 chr6 116918658 116918696 -65496546 + (CA)n Simple_repeat Simple_repeat 1 38 0 1457 178 35 38 chr6 116918698 116918985 -65496257 - AluJo SINE Alu -26 286 1 213 39 0 0 chr6 116919013 116919039 -65496203 + (GAA)n Simple_repeat Simple_repeat 2 27 0 439 225 0 0 chr6 116919041 116919121 -65496121 + MER58 DNA MER1_type 2340 2419 -1 203 333 8 60 chr6 116919230 116919347 -65495895 + MIR3 SINE MIR 94 204 -4 2369 90 3 6 chr6 116920127 116920438 -65494804 - AluSq SINE Alu -3 310 1 820 237 93 23 chr6 116920552 116920809 -65494433 - ORSL DNA AcHobo 0 275 1 297 211 22 33 chr6 116921696 116921786 -65493456 - MLT1L LTR MaLR -1 614 526 4014 120 10 46 chr6 116922563 116923263 -65491979 + MER54B LTR ERVL 1 675 -118 689 259 81 48 chr6 116923336 116923645 -65491597 + L2 LINE L2 2995 3313 0 329 268 90 38 chr6 116923808 116923985 -65491257 - L1MC/D LINE L1 -712 5450 5291 576 296 76 0 chr6 116924194 116924366 -65490876 - MIR SINE MIR -74 188 4 24 0 0 0 chr6 116924637 116924661 -65490581 + AT_rich Low_complexity Low_complexity 1 24 0 984 152 29 0 chr6 116924829 116925000 -65490242 - L1PA13 LINE L1 -4 6159 5984 189 0 0 0 chr6 116926470 116926491 -65488751 + (A)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr6 116927436 116927458 -65487784 + AT_rich Low_complexity Low_complexity 1 22 0 957 285 30 47 chr6 116928530 116928895 -65486347 + L2 LINE L2 2950 3308 -5 * 1445 222 115 49 chr6 116928858 116929430 -65485812 - L2 LINE L2 -565 2749 2140 415 241 112 17 chr6 116929437 116929553 -65485689 - L2 LINE L2 -1330 1984 1858 319 336 25 8 chr6 116929568 116929687 -65485555 - L3 LINE CR1 -615 962 842 256 61 0 61 chr6 116929754 116929803 -65485439 + (TTTTTA)n Simple_repeat Simple_repeat 3 48 0 756 303 116 22 chr6 116929827 116930197 -65485045 - L3 LINE CR1 -820 757 353 339 255 179 0 chr6 116930773 116930957 -65484285 + L1ME1 LINE L1 5933 6149 -17 223 314 0 0 chr6 116930967 116931018 -65484224 - MIR SINE MIR -121 87 37 2213 105 3 3 chr6 116931219 116931514 -65483728 - AluSx SINE Alu -17 295 1 243 0 0 0 chr6 116931524 116931551 -65483691 + (GCTG)n Simple_repeat Simple_repeat 1 27 0 378 0 0 0 chr6 116931552 116931594 -65483648 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 668 248 81 64 chr6 116931634 116931993 -65483249 - L2 LINE L2 -373 2941 2577 718 225 51 17 chr6 116931999 116932177 -65483065 + MER20 DNA MER1_type 1 184 -35 328 295 84 32 chr6 116932197 116932387 -65482855 - L2 LINE L2 -732 2582 2383 218 31 0 31 chr6 116932779 116932811 -65482431 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 284 146 0 0 chr6 116932814 116932855 -65482387 - AluS SINE Alu -27 273 233 890 200 7 0 chr6 116932899 116933049 -65482193 + AluJo SINE Alu 1 151 -161 400 230 0 0 chr6 116933174 116933248 -65481994 - AluJ/FLAM SINE Alu -237 75 2 339 231 31 108 chr6 116933252 116933351 -65481891 - L1MEd LINE L1 -5935 184 96 1660 203 7 3 chr6 116933351 116933642 -65481600 - AluJo SINE Alu -20 292 1 339 231 31 108 chr6 116933642 116933672 -65481570 - L1MEd LINE L1 -6023 96 65 30 27 0 0 chr6 116933790 116933827 -65481415 + AT_rich Low_complexity Low_complexity 1 37 0 2288 111 0 0 chr6 116933914 116934212 -65481030 - AluSg SINE Alu -12 298 1 23 33 0 0 chr6 116934583 116934613 -65480629 + AT_rich Low_complexity Low_complexity 1 30 0 13635 172 21 28 chr6 116934614 116935172 -65480070 - L1PA16 LINE L1 0 6869 6309 2137 107 38 3 chr6 116935172 116935462 -65479780 - AluSx SINE Alu -12 300 1 13635 172 21 28 chr6 116935462 116939887 -65475355 - L1PA16 LINE L1 -560 6309 1857 249 57 0 0 chr6 116939887 116939922 -65475320 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2119 115 4 0 chr6 116939924 116940202 -65475040 - AluSx SINE Alu -33 279 1 13635 172 21 28 chr6 116940202 116940428 -65474814 - L1PA16 LINE L1 -5013 1856 1630 201 74 0 0 chr6 116940428 116940455 -65474787 + (TTA)n Simple_repeat Simple_repeat 1 27 0 13635 172 21 28 chr6 116940455 116940578 -65474664 - L1PA16 LINE L1 -5239 1630 1508 2016 140 3 22 chr6 116940578 116940893 -65474349 - AluSx SINE Alu -3 309 1 13635 172 21 28 chr6 116940893 116942680 -65472562 - L1PA16 LINE L1 -5361 1508 5 969 207 6 0 chr6 116943005 116943174 -65472068 + FAM SINE Alu 2 171 -4 2493 73 3 0 chr6 116943581 116943883 -65471359 - AluSp SINE Alu -10 303 1 23 0 0 0 chr6 116944073 116944096 -65471146 + AT_rich Low_complexity Low_complexity 1 23 0 266 211 14 0 chr6 116944103 116944174 -65471068 + L1 LINE L1 3876 3947 -2199 1749 142 36 11 chr6 116944539 116944813 -65470429 + AluSx SINE Alu 1 281 -31 30 0 0 0 chr6 116944819 116944849 -65470393 + AT_rich Low_complexity Low_complexity 1 30 0 180 226 0 0 chr6 116945028 116945090 -65470152 + A-rich Low_complexity Low_complexity 5 66 0 2150 278 105 35 chr6 116945573 116946777 -65468465 + L1ME LINE L1 47 1165 -5096 3404 108 10 6 chr6 116946777 116947284 -65467958 + MER9 LTR ERVK 3 511 0 2150 278 105 35 chr6 116947284 116947421 -65467821 + L1ME LINE L1 1165 1291 -4970 1716 186 3 10 chr6 116947421 116947717 -65467525 + AluJo SINE Alu 10 303 -9 2150 278 105 35 chr6 116947717 116947765 -65467477 + L1ME LINE L1 1291 1334 -4927 2138 124 3 0 chr6 116947765 116948076 -65467166 + AluSq SINE Alu 3 314 0 2150 278 105 35 chr6 116948076 116948796 -65466446 + L1ME LINE L1 1334 2344 -3917 30 0 0 0 chr6 116949482 116949512 -65465730 + AT_rich Low_complexity Low_complexity 1 30 0 20004 52 5 0 chr6 116949806 116952476 -65462766 - L1P LINE L1 -2841 3305 623 720 53 0 0 chr6 116952474 116952569 -65462673 - L1P LINE L1 -6048 98 4 * 3494 106 18 30 chr6 116952575 116953334 -65461908 - L1P5 LINE L1 -370 5781 5033 1613 146 80 47 chr6 116953334 116953696 -65461546 + Tigger4(Zombi) DNA MER2_type 2055 2428 -303 534 118 0 0 chr6 116953656 116953732 -65461510 + U6 snRNA snRNA 1 76 -31 * 1493 102 25 0 chr6 116953764 116954000 -65461242 + Tigger4(Zombi) DNA MER2_type 2379 2620 -111 553 270 6 0 chr6 116955411 116955574 -65459668 - L1MA10 LINE L1 -2 6332 6169 403 262 7 7 chr6 116955612 116955753 -65459489 + CT-rich Low_complexity Low_complexity 3 143 0 2010 133 0 4 chr6 116955753 116956032 -65459210 - AluSx SINE Alu -34 278 1 1176 189 11 28 chr6 116956075 116956361 -65458881 - L1ME1 LINE L1 -185 5981 5701 22 0 0 0 chr6 116956671 116956693 -65458549 + AT_rich Low_complexity Low_complexity 1 22 0 1982 167 3 3 chr6 116956974 116957286 -65457956 - AluJb SINE Alu 0 312 1 459 167 0 0 chr6 116957345 116957435 -65457807 + GA-rich Low_complexity Low_complexity 3 92 0 1474 159 56 8 chr6 116957463 116957597 -65457645 - AluJb SINE Alu -48 264 138 260 83 21 0 chr6 116957597 116957645 -65457597 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 1474 159 56 8 chr6 116957645 116957762 -65457480 - AluJb SINE Alu -174 138 1 2297 110 0 3 chr6 116958065 116958375 -65456867 - AluSx SINE Alu -3 309 1 6235 179 13 55 chr6 116958375 116958604 -65456638 - L1MA2 LINE L1 -19 6285 6048 2248 102 0 52 chr6 116958604 116958787 -65456455 - AluSx SINE Alu -4 308 148 1673 94 0 5 chr6 116958787 116958999 -65456243 - AluSx SINE Alu -88 224 14 2248 102 0 52 chr6 116958999 116959140 -65456102 - AluSx SINE Alu -164 148 1 6235 179 13 55 chr6 116959140 116960762 -65454480 - L1MA2 LINE L1 -256 6048 4359 2377 98 0 0 chr6 116960762 116961069 -65454173 - AluSc SINE Alu -2 307 1 6235 179 13 55 chr6 116961069 116961282 -65453960 - L1MA2 LINE L1 -1945 4359 4139 294 167 0 0 chr6 116961282 116961336 -65453906 + FRAM/FAM SINE Alu 2 55 -120 6235 179 13 55 chr6 116961336 116961353 -65453889 - L1MA2 LINE L1 -2165 4139 4123 2188 142 0 0 chr6 116961353 116961662 -65453580 - AluJb SINE Alu -3 309 1 6235 179 13 55 chr6 116961662 116962049 -65453193 - L1MA2 LINE L1 -2181 4123 3877 495 73 88 14 chr6 116962135 116962484 -65452758 + (TA)n Simple_repeat Simple_repeat 1 374 0 1632 125 56 62 chr6 116962552 116962717 -65452525 - AluSx SINE Alu -10 302 138 2835 7 0 0 chr6 116962717 116963025 -65452217 - AluYb8 SINE Alu -10 308 1 1632 125 56 62 chr6 116963025 116963163 -65452079 - AluSx SINE Alu -174 138 1 28 29 0 0 chr6 116963385 116963420 -65451822 + AT_rich Low_complexity Low_complexity 1 35 0 2428 91 0 3 chr6 116963766 116964074 -65451168 + AluSg SINE Alu 1 307 -3 231 315 77 21 chr6 116964616 116964759 -65450483 - L2 LINE L2 -1 3312 3162 595 217 132 37 chr6 116966010 116966305 -65448937 - L1MDa LINE L1 -3390 3150 2828 2116 123 0 7 chr6 116966305 116966613 -65448629 - AluSx SINE Alu 0 306 1 776 175 85 14 chr6 116966680 116966891 -65448351 - L1MDa LINE L1 -5308 1232 1007 4148 161 4 35 chr6 116966894 116966943 -65448299 - L1MB3 LINE L1 -2 6181 6132 2034 143 0 3 chr6 116966943 116967230 -65448012 - AluJb SINE Alu -26 286 1 4148 161 4 35 chr6 116967230 116968014 -65447228 - L1MB3 LINE L1 -51 6132 5374 183 80 0 0 chr6 116968016 116968041 -65447201 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2199 107 0 0 chr6 116968041 116968321 -65446921 - AluSx SINE Alu -32 280 1 225 150 0 0 chr6 116968333 116968373 -65446869 - LTR54 LTR ERV1 -61 449 410 2562 201 51 38 chr6 116968391 116968991 -65446251 - L1MDa LINE L1 -5517 1023 195 1561 183 7 33 chr6 116968991 116969291 -65445951 + AluJo SINE Alu 12 303 -9 2562 201 51 38 chr6 116969291 116969472 -65445770 - L1MDa LINE L1 -6345 195 18 542 221 100 13 chr6 116969478 116969709 -65445533 - L1MEc LINE L1 -5465 931 681 342 108 21 15 chr6 116969709 116969783 -65445459 - Alu SINE Alu -1 301 236 628 304 81 32 chr6 116970011 116970380 -65444862 - L1MEc LINE L1 -5992 404 18 183 80 0 0 chr6 116970402 116970427 -65444815 + (T)n Simple_repeat Simple_repeat 1 25 0 461 300 142 0 chr6 116970542 116970859 -65444383 + L1ME4a LINE L1 5756 6117 -4 2147 102 14 14 chr6 116971607 116971901 -65443341 + AluSq SINE Alu 1 294 -19 465 314 136 31 chr6 116971932 116972285 -65442957 + HAL1b LINE L1 331 720 -628 40752 66 6 3 chr6 116972399 116978519 -65436723 + L1PA5 LINE L1 13 6153 -1 1866 157 16 19 chr6 116978539 116978819 -65436423 + AluJo SINE Alu 1 281 -31 423 38 0 0 chr6 116978819 116978872 -65436370 + (CA)n Simple_repeat Simple_repeat 2 54 0 1866 157 16 19 chr6 116978872 116978904 -65436338 + AluJo SINE Alu 281 312 0 240 327 67 39 chr6 116978950 116979054 -65436188 - L2 LINE L2 -218 3054 2948 1987 81 4 0 chr6 116979404 116979679 -65435563 - AluY SINE Alu 0 312 37 951 239 24 0 chr6 116979800 116980013 -65435229 + MER58A DNA MER1_type 4 221 -3 182 307 40 53 chr6 116981379 116981454 -65433788 - L3 LINE CR1 -183 1394 1321 202 169 90 11 chr6 116981944 116982033 -65433209 + (TTAAA)n Simple_repeat Simple_repeat 5 100 0 249 135 0 0 chr6 116983886 116983923 -65431319 + Alu SINE Alu 182 218 -84 225 94 0 0 chr6 116984061 116984093 -65431149 + (A)n Simple_repeat Simple_repeat 1 32 0 242 226 19 0 chr6 116985591 116985644 -65429598 + (TATG)n Simple_repeat Simple_repeat 3 56 0 359 248 96 25 chr6 116985695 116985852 -65429390 + MIR3 SINE MIR 16 183 -25 210 71 0 0 chr6 116986995 116987023 -65428219 + (TG)n Simple_repeat Simple_repeat 2 29 0 451 341 45 6 chr6 116987030 116987206 -65428036 - MIR3 SINE MIR -22 186 4 180 267 0 0 chr6 116987209 116987269 -65427973 + (TA)n Simple_repeat Simple_repeat 2 61 0 318 313 73 73 chr6 116988397 116988672 -65426570 - L1MC4a LINE L1 -1718 6090 5816 1237 162 61 9 chr6 116988674 116988902 -65426340 - AluJo SINE Alu -2 310 71 249 306 19 72 chr6 116988961 116989101 -65426141 - L1MC4a LINE L1 -2042 5766 5639 2260 119 3 0 chr6 116989101 116989404 -65425838 - AluSx SINE Alu -8 304 1 249 306 19 72 chr6 116989404 116989472 -65425770 - L1MC4a LINE L1 -2169 5639 5569 5832 163 26 6 chr6 116989538 116990780 -65424462 - L1PB3 LINE L1 -2 6152 4864 2656 84 19 6 chr6 116990780 116991139 -65424103 - THE1B LTR MaLR 0 364 1 5832 163 26 6 chr6 116991139 116991520 -65423722 - L1PB3 LINE L1 -1290 4864 4492 2029 133 10 0 chr6 116991533 116991826 -65423416 - AluSx SINE Alu -14 298 3 2338 87 0 0 chr6 116992689 116992987 -65422255 - AluSq SINE Alu -15 298 1 2068 101 63 3 chr6 116993181 116993467 -65421775 - AluSq SINE Alu -10 303 1 502 206 91 74 chr6 116994298 116994473 -65420769 - MER5B DNA MER1_type 0 178 1 285 234 143 0 chr6 116994749 116994826 -65420416 + MLT1K LTR MaLR 482 569 -19 240 35 0 0 chr6 116994846 116994875 -65420367 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2023 114 0 24 chr6 116994881 116995170 -65420072 - AluSx SINE Alu -30 282 1 2247 103 3 0 chr6 116995176 116995476 -65419766 - AluSx SINE Alu -11 301 1 2067 127 28 3 chr6 116995491 116995813 -65419429 - MER49 LTR ERV1 -9 914 585 313 306 188 50 chr6 116995819 116996355 -65418887 + L2 LINE L2 2246 2855 -459 765 227 196 0 chr6 116996625 116996845 -65418397 - LTR53 LTR ERVL 0 519 257 1372 156 5 0 chr6 116996988 116997199 -65418043 + AluJo SINE Alu 1 212 -100 184 261 70 87 chr6 116997388 116997503 -65417739 + L2 LINE L2 3160 3272 0 * 409 333 17 17 chr6 116997485 116997602 -65417640 - L2 LINE L2 -1 3271 3155 2217 112 0 0 chr6 116997739 116998026 -65417216 - AluSc SINE Alu -22 287 1 1115 199 22 22 chr6 116998269 116998500 -65416742 + MIR SINE MIR 30 260 -2 1629 179 11 14 chr6 116998517 116998797 -65416445 - MLT1A1 LTR MaLR -86 279 1 306 220 33 44 chr6 116999437 116999528 -65415714 + MIR SINE MIR 2 91 -171 1603 161 127 47 chr6 116999765 117000126 -65415116 - MLT1B LTR MaLR 0 390 1 320 255 20 74 chr6 117000145 117000294 -65414948 + MIR SINE MIR 107 247 -15 320 304 122 9 chr6 117000627 117000742 -65414500 - MIR3 SINE MIR -15 193 66 205 343 71 0 chr6 117000847 117000917 -65414325 + L2 LINE L2 3186 3260 -12 714 207 133 5 chr6 117001054 117001242 -65414000 + L1ME3A LINE L1 5847 6058 -112 284 132 15 59 chr6 117001244 117001312 -65413930 + L1ME3A LINE L1 6105 6169 -1 2124 107 35 0 chr6 117001763 117002052 -65413190 - AluSx SINE Alu -13 299 1 1983 104 59 7 chr6 117002141 117002429 -65412813 + AluSg SINE Alu 3 305 -5 24 0 0 0 chr6 117002463 117002487 -65412755 + AT_rich Low_complexity Low_complexity 1 24 0 39 0 0 0 chr6 117003278 117003317 -65411925 + AT_rich Low_complexity Low_complexity 1 39 0 383 240 8 99 chr6 117004332 117004453 -65410789 - MER81 DNA DNA -1 113 4 454 219 167 82 chr6 117004625 117005106 -65410136 - MLT1F LTR MaLR 0 590 33 1953 155 0 0 chr6 117005177 117005468 -65409774 + AluSx SINE Alu 3 293 -19 414 0 0 0 chr6 117005640 117005686 -65409556 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 2152 160 61 3 chr6 117005693 117006069 -65409173 - Tigger1 DNA MER2_type 0 2418 2021 * 9876 114 16 17 chr6 117006068 117007216 -65408026 - Tigger1 DNA MER2_type -916 1502 354 432 0 0 0 chr6 117007216 117007264 -65407978 + (GA)n Simple_repeat Simple_repeat 1 48 0 9876 114 16 17 chr6 117007264 117007617 -65407625 - Tigger1 DNA MER2_type -2064 354 2 468 0 0 0 chr6 117007634 117007686 -65407556 + (CA)n Simple_repeat Simple_repeat 2 53 0 1897 163 3 0 chr6 117008075 117008376 -65406866 - AluJo SINE Alu 0 312 11 203 206 0 0 chr6 117009518 117009552 -65405690 + L2 LINE L2 3220 3253 -19 2001 138 7 0 chr6 117010450 117010741 -65404501 + AluJo SINE Alu 1 293 -19 360 200 0 0 chr6 117010742 117010832 -65404410 + (TA)n Simple_repeat Simple_repeat 1 90 0 212 0 36 0 chr6 117010836 117010864 -65404378 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 7581 27 38 0 chr6 117011184 117012518 -65402724 - L1PA4 LINE L1 -1 6154 4799 194 105 26 0 chr6 117012710 117012748 -65402494 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2041 114 13 22 chr6 117013283 117013598 -65401644 - AluSx SINE Alu 0 312 1 1612 199 62 62 chr6 117014178 117014630 -65400612 - LTR40c LTR ERVL -13 452 1 2041 118 42 0 chr6 117016232 117016521 -65398721 - AluSg SINE Alu -9 301 1 553 204 48 32 chr6 117016751 117016937 -65398305 + L1MC5 LINE L1 7729 7917 -44 3820 213 77 8 chr6 117016960 117018070 -65397172 - L1MDb LINE L1 -2876 3339 2153 1116 134 89 9 chr6 117018089 117018313 -65396929 - L1MB7 LINE L1 -41 6143 5902 1756 191 38 18 chr6 117018318 117018658 -65396584 + MER7A DNA MER2_type 2 346 0 331 169 0 0 chr6 117018672 117018731 -65396511 + U2 snRNA snRNA 1 59 -129 435 101 14 0 chr6 117018732 117018801 -65396441 - L1MB7 LINE L1 -267 5911 5842 * 1604 201 68 97 chr6 117018800 117019451 -65395791 - L1MDb LINE L1 -4178 2218 1587 290 140 35 0 chr6 117019462 117019519 -65395723 + CT-rich Low_complexity Low_complexity 2 60 0 860 254 29 40 chr6 117019521 117019967 -65395275 - L1MDb LINE L1 -4784 1433 1013 343 229 0 21 chr6 117019958 117020054 -65395188 - L1MDb LINE L1 -5286 1110 1017 * 754 206 7 0 chr6 117020054 117020190 -65395052 - FLAM_A SINE Alu 0 142 6 2991 247 74 10 chr6 117020203 117021123 -65394119 - L1MDb LINE L1 -5381 1015 37 1419 192 160 64 chr6 117021131 117021776 -65393466 + L1MC5 LINE L1 7007 7713 -248 563 248 35 22 chr6 117021946 117022176 -65393066 - L1M4c LINE L1 -3884 2500 2268 549 136 0 104 chr6 117022177 117022258 -65392984 - FLAM_A SINE Alu -175 136 63 2355 70 0 0 chr6 117022258 117022538 -65392704 + AluY SINE Alu 1 283 -28 268 103 0 0 chr6 117022538 117022577 -65392665 + (CAA)n Simple_repeat Simple_repeat 1 180 0 549 136 0 104 chr6 117022583 117022619 -65392623 - FLAM_A SINE Alu -248 63 25 1762 159 10 19 chr6 117023033 117023341 -65391901 - AluJo SINE Alu -7 305 1 2339 84 0 3 chr6 117023395 117023694 -65391548 + AluY SINE Alu 1 298 -13 1870 178 0 7 chr6 117023702 117024006 -65391236 + AluJo SINE Alu 1 302 -10 2202 115 13 3 chr6 117024590 117024895 -65390347 + AluSx SINE Alu 1 308 -4 234 0 0 0 chr6 117027239 117027265 -65387977 + (CTG)n Simple_repeat Simple_repeat 2 27 0 30 59 0 0 chr6 117027395 117027446 -65387796 + AT_rich Low_complexity Low_complexity 1 51 0 674 171 54 0 chr6 117027480 117027591 -65387651 - FLAM_A SINE Alu -20 122 6 1078 226 45 7 chr6 117027696 117027984 -65387258 + L1ME3A LINE L1 5454 5752 -418 1259 174 56 43 chr6 117027984 117028306 -65386936 + MLT1B LTR MaLR 1 326 -64 201 238 0 0 chr6 117028308 117028371 -65386871 + (TA)n Simple_repeat Simple_repeat 2 64 0 430 105 2 0 chr6 117028381 117028450 -65386792 + MLT1B LTR MaLR 331 390 0 595 193 50 0 chr6 117028450 117028590 -65386652 + L1ME3A LINE L1 5748 5894 -276 28 48 0 0 chr6 117028779 117028821 -65386421 + AT_rich Low_complexity Low_complexity 1 42 0 2091 114 10 10 chr6 117028832 117029121 -65386121 - AluSq SINE Alu -15 298 10 791 274 28 35 chr6 117029472 117029789 -65385453 - L1ME LINE L1 -5754 316 2 2277 266 89 64 chr6 117029792 117031045 -65384197 - HAL1 LINE L1 -783 1724 429 2644 124 64 0 chr6 117031045 117031464 -65383778 - MER83 LTR ERV1 0 448 3 2277 266 89 64 chr6 117031464 117031659 -65383583 - HAL1 LINE L1 -2078 429 240 420 289 89 15 chr6 117032158 117032428 -65382814 - L1ME LINE L1 -312 5809 5520 365 235 22 81 chr6 117032493 117032629 -65382613 + MER21B LTR ERV1 363 490 -373 1836 93 50 4 chr6 117033045 117033304 -65381938 - AluSg SINE Alu -2 308 38 2104 142 43 93 chr6 117033529 117034087 -65381155 + L1MA9 LINE L1 5744 6273 -39 499 90 0 0 chr6 117034264 117034331 -65380911 - Alu SINE Alu -14 297 231 261 83 0 0 chr6 117034332 117034368 -65380874 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 1850 163 10 0 chr6 117034374 117034681 -65380561 - AluSx SINE Alu 0 312 3 2408 84 0 16 chr6 117035132 117035441 -65379801 - AluSq SINE Alu -9 304 1 6417 89 1 5 chr6 117035464 117036958 -65378284 - L1PA10 LINE L1 -11 6157 4667 22 0 0 0 chr6 117039360 117039382 -65375860 + AT_rich Low_complexity Low_complexity 1 22 0 2297 70 0 0 chr6 117039738 117040025 -65375217 + AluY SINE Alu 1 287 -24 1413 196 4 4 chr6 117040624 117040874 -65374368 - AluJb SINE Alu -62 250 1 934 243 46 18 chr6 117041850 117042068 -65373174 - MIR SINE MIR -37 225 2 1877 113 23 0 chr6 117042135 117042392 -65372850 + AluSx SINE Alu 38 300 -12 4575 170 34 37 chr6 117042951 117043934 -65371308 + Charlie1a DNA MER1_type 1 980 -475 856 165 82 0 chr6 117043942 117044124 -65371118 - L1MC2 LINE L1 -11 6333 6137 2102 144 53 15 chr6 117044124 117044535 -65370707 - L1MC3 LINE L1 -191 7594 7168 2158 163 27 35 chr6 117044541 117045026 -65370216 + Charlie1a DNA MER1_type 970 1450 -5 198 301 84 0 chr6 117046056 117046139 -65369103 - L3 LINE CR1 -3 1574 1485 288 0 0 0 chr6 117047208 117047240 -65368002 + (TA)n Simple_repeat Simple_repeat 2 33 0 2100 132 0 13 chr6 117047240 117047551 -65367691 - AluJb SINE Alu -1 311 5 27 62 0 0 chr6 117047557 117047605 -65367637 + AT_rich Low_complexity Low_complexity 1 48 0 2066 130 48 0 chr6 117048294 117048587 -65366655 - AluSx SINE Alu -5 307 1 216 354 146 12 chr6 117048589 117048753 -65366489 - L2 LINE L2 -10 3262 3077 804 219 0 0 chr6 117048802 117048957 -65366285 + FAM SINE Alu 2 156 -19 259 192 13 103 chr6 117048976 117049054 -65366188 + MIR SINE MIR 73 143 -65 195 42 0 0 chr6 117049085 117049109 -65366133 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 235 293 98 58 chr6 117049765 117049939 -65365303 - L2 LINE L2 -6 3307 3127 1874 113 53 50 chr6 117050150 117050452 -65364790 + AluSx SINE Alu 1 303 -9 1684 251 70 28 chr6 117050503 117051105 -65364137 + L1ME LINE L1 6 632 -5438 315 280 53 0 chr6 117051113 117051188 -65364054 - MER91 DNA MER1_type -73 123 45 2276 108 0 3 chr6 117051658 117051963 -65363279 + AluSc SINE Alu 1 304 -5 217 236 0 0 chr6 117053532 117053587 -65361655 + A-rich Low_complexity Low_complexity 6 60 0 1679 163 60 0 chr6 117055416 117055699 -65359543 - AluSx SINE Alu -11 301 2 2317 108 0 13 chr6 117056337 117056653 -65358589 - AluSx SINE Alu 0 312 1 22 0 0 0 chr6 117056662 117056684 -65358558 + AT_rich Low_complexity Low_complexity 1 22 0 221 319 96 0 chr6 117057936 117058030 -65357212 - L2 LINE L2 -1 3312 3210 578 279 111 53 chr6 117058288 117059008 -65356234 - L1ME4a LINE L1 -44 6077 5316 1037 231 164 48 chr6 117059433 117059910 -65355332 - MLT1H LTR MaLR -7 542 11 2195 119 3 0 chr6 117060271 117060557 -65354685 + AluSx SINE Alu 1 287 -25 1446 182 0 0 chr6 117060705 117060936 -65354306 - AluJb SINE Alu -81 231 1 1427 152 10 76 chr6 117061023 117061325 -65353917 + AluJo SINE Alu 1 282 -30 2076 160 3 6 chr6 117061382 117061732 -65353510 - L1PA16 LINE L1 -24 6142 5792 390 42 0 0 chr6 117061732 117061780 -65353462 + (TG)n Simple_repeat Simple_repeat 2 49 0 2076 160 3 6 chr6 117061780 117061791 -65353451 - L1PA16 LINE L1 -374 5792 5782 548 107 0 0 chr6 117061793 117061868 -65353374 - AluS SINE Alu -238 75 1 211 214 0 0 chr6 117062047 117062089 -65353153 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 2668 106 13 34 chr6 117062089 117062560 -65352682 - L1PA16 LINE L1 -377 5779 5319 2299 96 0 3 chr6 117062568 117062861 -65352381 - AluSg SINE Alu -18 292 1 675 239 73 42 chr6 117063011 117063344 -65351898 - MLT1J2 LTR MaLR -3 447 126 15547 103 35 11 chr6 117063344 117063596 -65351646 - Tigger1 DNA MER2_type 0 2418 2174 2113 114 7 17 chr6 117063596 117063758 -65351484 - AluSx SINE Alu -16 296 134 209 33 33 0 chr6 117063758 117063788 -65351454 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2143 109 3 0 chr6 117063788 117064073 -65351169 - AluSp SINE Alu -27 286 1 2113 114 7 17 chr6 117064073 117064208 -65351034 - AluSx SINE Alu -176 136 1 15547 103 35 11 chr6 117064208 117066316 -65348926 - Tigger1 DNA MER2_type -244 2174 1 675 239 73 42 chr6 117066316 117066379 -65348863 - MLT1J2 LTR MaLR -324 126 9 2332 97 3 0 chr6 117066651 117066960 -65348282 - AluSg SINE Alu 0 310 1 276 256 12 0 chr6 117067224 117067306 -65347936 + L1MDb LINE L1 1162 1244 -5165 1129 130 10 53 chr6 117067649 117067777 -65347465 + MER2 DNA MER2_type 1 118 -227 1948 143 13 7 chr6 117067777 117068077 -65347165 - AluJb SINE Alu -10 302 1 1129 130 10 53 chr6 117068077 117068156 -65347086 + MER2 DNA MER2_type 118 199 -146 544 143 0 0 chr6 117068157 117068241 -65347001 - AluJ/FLAM SINE Alu -228 84 1 531 111 11 0 chr6 117068241 117068331 -65346911 + MER2 DNA MER2_type 120 210 -135 398 184 40 0 chr6 117068357 117068433 -65346809 + MER2 DNA MER2_type 267 345 0 991 138 44 6 chr6 117068737 117068918 -65346324 - L1MB3 LINE L1 0 6183 5996 747 289 66 8 chr6 117069567 117069809 -65345433 - MIR SINE MIR 0 262 7 711 245 95 5 chr6 117071960 117072160 -65343082 + MIR SINE MIR 30 247 -15 254 286 0 0 chr6 117072280 117072336 -65342906 + L2 LINE L2 3217 3272 0 1782 165 9 40 chr6 117072365 117072687 -65342555 + AluJo SINE Alu 1 312 0 379 118 21 32 chr6 117072689 117072782 -65342460 + GA-rich Low_complexity Low_complexity 3 94 0 508 259 105 0 chr6 117073008 117073151 -65342091 + MIR SINE MIR 103 260 -2 209 358 30 15 chr6 117073386 117073453 -65341789 - L2 LINE L2 -47 3225 3158 236 313 47 47 chr6 117073642 117073770 -65341472 + MER5A DNA MER1_type 48 175 -3 21 36 0 0 chr6 117074603 117074631 -65340611 + AT_rich Low_complexity Low_complexity 1 28 0 36387 43 109 1 chr6 117074696 117080229 -65335013 + L1PA4 LINE L1 4 6155 0 1266 188 43 70 chr6 117080562 117080935 -65334307 - MLT1A1 LTR MaLR -2 363 1 600 292 35 15 chr6 117081538 117081740 -65333502 - MIR3 SINE MIR 0 208 3 302 259 120 9 chr6 117081884 117081992 -65333250 - L2 LINE L2 -5 3267 3148 2077 142 43 14 chr6 117082283 117082629 -65332613 - MLT1A1 LTR MaLR 0 365 10 677 112 20 0 chr6 117082630 117082728 -65332514 + MER1B DNA MER1_type 231 330 -9 1601 153 0 51 chr6 117082772 117083067 -65332175 + AluJb SINE Alu 6 285 -27 32 26 0 0 chr6 117085181 117085220 -65330022 + AT_rich Low_complexity Low_complexity 1 39 0 274 313 104 21 chr6 117085485 117085629 -65329613 - MIR SINE MIR -28 234 79 536 258 40 0 chr6 117087158 117087282 -65327960 - MIR SINE MIR -24 238 110 444 257 181 6 chr6 117087988 117088159 -65327083 + MIR SINE MIR 62 262 0 304 264 257 0 chr6 117088475 117088615 -65326627 - MER5B DNA MER1_type 0 178 3 266 114 0 0 chr6 117088913 117088948 -65326294 + AluJ/FLAM SINE Alu 33 67 -235 249 268 113 10 chr6 117088968 117089065 -65326177 - MIR SINE MIR -83 179 73 1659 182 129 34 chr6 117089245 117089286 -65325956 - Charlie1b DNA MER1_type -2238 523 487 1357 186 55 22 chr6 117089286 117089561 -65325681 - AluJb SINE Alu -28 284 1 1659 182 129 34 chr6 117089561 117089991 -65325251 - Charlie1b DNA MER1_type -2274 487 7 283 333 138 0 chr6 117090426 117090585 -65324657 + L2 LINE L2 2172 2352 -962 232 293 27 40 chr6 117091073 117091148 -65324094 - L2 LINE L2 -1 3271 3198 534 143 0 0 chr6 117091185 117091262 -65323980 + AluJ/FLAM SINE Alu 2 78 -234 1695 173 14 0 chr6 117091533 117091816 -65323426 + AluSx SINE Alu 1 287 -25 404 263 32 69 chr6 117092063 117092266 -65322976 + MLT1I LTR MaLR 15 210 -199 276 231 15 15 chr6 117092450 117092515 -65322727 + MLT1I LTR MaLR 345 409 0 275 209 70 132 chr6 117093129 117093258 -65321984 + MIR3 SINE MIR 3 123 -85 3746 179 80 4 chr6 117093313 117094072 -65321170 + L1MB8 LINE L1 5361 6177 -1 2104 123 3 0 chr6 117094082 117094384 -65320858 + AluSx SINE Alu 1 303 -9 207 0 0 0 chr6 117094401 117094424 -65320818 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 212 365 130 26 chr6 117094424 117094616 -65320626 - L2 LINE L2 -18 3254 3043 1875 125 21 0 chr6 117095241 117095528 -65319714 + AluSx SINE Alu 1 293 -19 626 244 6 0 chr6 117095530 117095702 -65319540 + GA-rich Low_complexity Low_complexity 1 173 0 399 181 0 36 chr6 117095703 117095786 -65319456 + A-rich Low_complexity Low_complexity 4 83 0 180 176 0 0 chr6 117095786 117095820 -65319422 + GA-rich Low_complexity Low_complexity 2 35 0 306 318 85 0 chr6 117096392 117096521 -65318721 + MIR SINE MIR 49 188 -74 316 309 56 45 chr6 117097546 117097724 -65317518 + MER5A DNA MER1_type 7 186 -3 1752 125 0 108 chr6 117097766 117097946 -65317296 - AluJo SINE Alu -5 307 180 1948 124 0 0 chr6 117097946 117098228 -65317014 - AluSq SINE Alu -10 303 22 1752 125 0 108 chr6 117098228 117098391 -65316851 - AluJo SINE Alu -132 180 1 456 292 82 36 chr6 117098848 117099153 -65316089 - L2 LINE L2 -121 3192 2874 199 122 195 0 chr6 117099435 117099476 -65315766 + L2 LINE L2 3023 3071 -201 350 309 70 48 chr6 117099889 117100203 -65315039 + Charlie7 DNA MER1_type 1 321 -2291 278 157 20 0 chr6 117100200 117100251 -65314991 + Charlie7 DNA MER1_type 1427 1478 -1134 * 1022 197 90 92 chr6 117100280 117100579 -65314663 + Charlie7 DNA MER1_type 1452 1752 -860 2071 113 3 0 chr6 117100579 117100885 -65314357 - AluSp SINE Alu 0 307 1 1022 197 90 92 chr6 117100885 117101052 -65314190 + Charlie7 DNA MER1_type 1752 1918 -694 1570 267 12 18 chr6 117101052 117101558 -65313684 + L1ME3A LINE L1 3331 3833 -2313 1450 230 49 85 chr6 117101559 117102042 -65313200 + L1ME3A LINE L1 4066 4524 -1622 1600 151 0 40 chr6 117102042 117102340 -65312902 + AluJb SINE Alu 22 307 -5 1450 230 49 85 chr6 117102340 117102469 -65312773 + L1ME3A LINE L1 4524 4656 -1490 1204 220 0 15 chr6 117102469 117102733 -65312509 + AluJo SINE Alu 39 298 -14 1682 231 46 29 chr6 117102733 117103257 -65311985 + L1ME3A LINE L1 4649 5181 -965 204 188 0 59 chr6 117103542 117103643 -65311599 + CT-rich Low_complexity Low_complexity 3 97 0 196 261 11 87 chr6 117103983 117104075 -65311167 + MIR SINE MIR 108 192 -70 23 0 0 0 chr6 117107503 117107526 -65307716 + AT_rich Low_complexity Low_complexity 1 23 0 325 246 254 0 chr6 117107791 117107901 -65307341 - L2 LINE L2 -1 3271 3134 423 280 149 12 chr6 117108100 117108268 -65306974 - MIR3 SINE MIR -4 204 14 2161 99 3 0 chr6 117108476 117108778 -65306464 + AluSx SINE Alu 1 303 -9 419 279 84 84 chr6 117109031 117109223 -65306019 + MIR SINE MIR 5 198 -10 1329 245 18 55 chr6 117109322 117109516 -65305726 + L1ME3A LINE L1 5457 5657 -513 859 149 0 15 chr6 117109516 117109650 -65305592 + FLAM_C SINE Alu 1 132 -1 1329 245 18 55 chr6 117109650 117109965 -65305277 + L1ME3A LINE L1 5657 5947 -223 849 186 0 26 chr6 117110077 117110233 -65305009 - FRAM SINE Alu -20 156 5 451 233 28 42 chr6 117110240 117110405 -65304837 + L1ME3A LINE L1 5988 6150 -14 2029 142 0 3 chr6 117110405 117110714 -65304528 - AluSx SINE Alu -4 308 1 721 208 87 0 chr6 117112783 117112932 -65302310 - MER21B LTR ERV1 -373 490 329 2000 108 0 10 chr6 117113296 117113593 -65301649 - AluSg SINE Alu -16 294 1 2091 109 13 0 chr6 117113643 117113947 -65301295 - AluSx SINE Alu -4 308 1 327 300 163 6 chr6 117114328 117114641 -65300601 - L1MEd LINE L1 -5192 927 566 388 252 112 21 chr6 117114998 117115141 -65300101 - L1MEd LINE L1 -5960 159 4 424 131 115 161 chr6 117115287 117115417 -65299825 + MER63 DNA MER1_type 1 750 -86 586 147 60 26 chr6 117115557 117115673 -65299569 - Charlie8 DNA MER1_type -2205 212 93 1243 183 8 12 chr6 117115685 117115926 -65299316 - AluJo SINE Alu -14 298 59 284 295 53 11 chr6 117116115 117116210 -65299032 + MIR SINE MIR 2 100 -162 420 247 25 105 chr6 117116399 117116561 -65298681 - MER5B DNA MER1_type -4 174 26 400 280 119 36 chr6 117116562 117116755 -65298487 - MIR SINE MIR -48 214 6 184 292 104 0 chr6 117116748 117116844 -65298398 + MIR SINE MIR 152 257 -5 * 1289 135 111 49 chr6 117118017 117118305 -65296937 - AluJb SINE Alu -6 306 1 24 0 0 0 chr6 117119440 117119464 -65295778 + GC_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr6 117119677 117119727 -65295515 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr6 117119978 117120001 -65295241 + GC_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 117120335 117120357 -65294885 + AT_rich Low_complexity Low_complexity 1 22 0 237 145 48 0 chr6 117121022 117121084 -65294158 + CT-rich Low_complexity Low_complexity 1 65 0 254 295 19 0 chr6 117121180 117121285 -65293957 + (CG)n Simple_repeat Simple_repeat 2 108 0 22 35 0 0 chr6 117122340 117122369 -65292873 + GC_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 117122662 117122684 -65292558 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 117122762 117122783 -65292459 + GC_rich Low_complexity Low_complexity 1 21 0 459 236 81 103 chr6 117126245 117126419 -65288823 - MER5B DNA MER1_type 0 178 9 425 254 35 18 chr6 117126426 117126540 -65288702 - MIR3 SINE MIR -48 160 45 21 0 0 0 chr6 117127437 117127458 -65287784 + AT_rich Low_complexity Low_complexity 1 21 0 262 130 19 37 chr6 117128110 117128164 -65287078 + FLAM SINE Alu 63 115 -18 472 283 7 29 chr6 117128537 117128675 -65286567 - L2 LINE L2 -1 3271 3137 372 237 97 26 chr6 117129097 117129211 -65286031 - MIR3 SINE MIR -21 187 66 1689 160 4 21 chr6 117129230 117129361 -65285881 + AluJo SINE Alu 7 139 -173 2364 87 0 3 chr6 117129361 117129659 -65285583 + AluSq SINE Alu 1 297 -16 1689 160 4 21 chr6 117129659 117129808 -65285434 + AluJo SINE Alu 139 282 -30 2443 83 0 0 chr6 117131584 117131885 -65283357 - AluY SINE Alu -10 301 1 1612 157 6 60 chr6 117131895 117132214 -65283028 - AluJo SINE Alu -10 302 1 1652 240 62 18 chr6 117132971 117133409 -65281833 + MLT1C LTR MaLR 7 463 -4 21 0 0 0 chr6 117134202 117134223 -65281019 + AT_rich Low_complexity Low_complexity 1 21 0 316 304 133 19 chr6 117134324 117134482 -65280760 - MIR SINE MIR 0 262 87 2349 60 3 3 chr6 117134592 117134910 -65280332 + AluY SINE Alu 1 318 0 2170 113 0 3 chr6 117135132 117135425 -65279817 + AluSq SINE Alu 1 292 -21 2464 75 0 7 chr6 117135458 117135766 -65279476 + AluSg1 SINE Alu 1 306 -3 219 69 0 0 chr6 117136967 117136996 -65278246 + (A)n Simple_repeat Simple_repeat 1 29 0 848 256 6 0 chr6 117139103 117139279 -65275963 + MER5B DNA MER1_type 1 177 -1 675 151 169 81 chr6 117139713 117139885 -65275357 + MER5A DNA MER1_type 2 188 -1 456 240 202 27 chr6 117141707 117141773 -65273469 - MIR SINE MIR -14 248 195 2024 112 36 36 chr6 117141773 117142077 -65273165 - AluSg SINE Alu -6 304 1 456 240 202 27 chr6 117142077 117142193 -65273049 - MIR SINE MIR -67 195 34 279 380 22 0 chr6 117144587 117144679 -65270563 - MIR3 SINE MIR -37 171 78 2831 25 0 6 chr6 117146621 117146941 -65268301 - AluYb8 SINE Alu 0 318 1 387 0 0 0 chr6 117148535 117148578 -65266664 + (TTA)n Simple_repeat Simple_repeat 2 44 0 729 190 17 0 chr6 117148581 117148697 -65266545 - FLAM_C SINE Alu -24 119 2 200 269 43 18 chr6 117148771 117148878 -65266364 - MIR SINE MIR -98 110 5 953 153 60 0 chr6 117151726 117151876 -65263366 - FRAM SINE Alu -7 159 1 2325 142 49 0 chr6 117151901 117152245 -65262997 + MER46B DNA MER2_type 1 236 0 271 258 58 42 chr6 117152462 117152582 -65262660 - MIR3 SINE MIR -21 187 66 1562 208 33 28 chr6 117153496 117153886 -65261356 + L1ME1 LINE L1 5770 6161 -5 2100 120 31 0 chr6 117154970 117155262 -65259980 - AluSq SINE Alu -12 301 1 2270 112 0 6 chr6 117155291 117155603 -65259639 - AluSx SINE Alu -2 310 1 216 0 0 0 chr6 117158172 117158196 -65257046 + (A)n Simple_repeat Simple_repeat 1 24 0 468 227 31 16 chr6 117158526 117158654 -65256588 - MER103 DNA DNA -18 148 19 183 80 0 0 chr6 117158675 117158700 -65256542 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 117161042 117161064 -65254178 + AT_rich Low_complexity Low_complexity 1 22 0 266 211 150 90 chr6 117162027 117162054 -65253188 - L1ME4a LINE L1 -2 6119 6095 2280 110 0 7 chr6 117162054 117162363 -65252879 + AluSx SINE Alu 1 307 -5 266 211 150 90 chr6 117162363 117162468 -65252774 - L1ME4a LINE L1 -26 6095 5979 2452 187 34 73 chr6 117162615 117162805 -65252437 - L1MD1 LINE L1 -8 6234 6038 1872 88 0 23 chr6 117162805 117163068 -65252174 - AluY SINE Alu -20 291 35 2452 187 34 73 chr6 117163068 117163088 -65252154 - L1MD1 LINE L1 -204 6038 6019 2293 108 0 0 chr6 117163088 117163394 -65251848 - AluSx SINE Alu -6 306 1 2452 187 34 73 chr6 117163394 117163802 -65251440 - L1MD1 LINE L1 -223 6019 5639 501 255 93 55 chr6 117163811 117164156 -65251086 - L1ME4a LINE L1 -303 5818 5461 21 0 0 0 chr6 117166787 117166808 -65248434 + AT_rich Low_complexity Low_complexity 1 21 0 2200 121 3 0 chr6 117166908 117167205 -65248037 - AluSg SINE Alu -12 298 1 207 297 110 0 chr6 117167331 117167422 -65247820 - MIR SINE MIR -63 145 45 204 40 0 0 chr6 117168726 117168751 -65246491 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 2166 106 17 3 chr6 117168958 117169260 -65245982 + AluSx SINE Alu 1 306 -6 508 178 39 54 chr6 117169565 117169694 -65245548 - L2 LINE L2 0 3313 3187 242 275 43 0 chr6 117169836 117169905 -65245337 - MIR3 SINE MIR 0 208 137 203 290 54 21 chr6 117171191 117171284 -65243958 + MIR SINE MIR 46 141 -121 23 0 0 0 chr6 117171953 117171976 -65243266 + AT_rich Low_complexity Low_complexity 1 23 0 3254 190 48 43 chr6 117172650 117173438 -65241804 - L1ME1 LINE L1 -6 6160 5369 1849 226 13 37 chr6 117173548 117174218 -65241024 - L1ME LINE L1 -356 5810 5159 257 224 13 0 chr6 117174212 117174288 -65240954 - L1MEc LINE L1 -1118 5097 5021 * 466 205 126 20 chr6 117174314 117174465 -65240777 - L1MEc LINE L1 -1313 4902 4736 6279 217 78 58 chr6 117174467 117174751 -65240491 - L1MEc LINE L1 -1652 4563 4286 2400 95 0 0 chr6 117174751 117175055 -65240187 + AluSq SINE Alu 1 304 -9 6279 217 78 58 chr6 117175055 117178340 -65236902 - L1MEc LINE L1 -1929 4286 1067 1916 148 3 20 chr6 117178340 117178507 -65236735 - AluSx SINE Alu -14 298 137 2378 76 10 3 chr6 117178507 117178811 -65236431 - AluY SINE Alu -5 306 1 1916 148 3 20 chr6 117178811 117178946 -65236296 - AluSx SINE Alu -175 137 1 6279 217 78 58 chr6 117178946 117178957 -65236285 - L1MEc LINE L1 -5148 1067 1058 3350 145 39 31 chr6 117178957 117179577 -65235665 - L1MB8 LINE L1 -1 6177 5553 6279 217 78 58 chr6 117179577 117179738 -65235504 - L1MEc LINE L1 -5157 1058 781 1592 266 56 51 chr6 117180760 117181426 -65233816 - L1MEc LINE L1 -5607 789 121 301 116 0 0 chr6 117183879 117183948 -65231294 - Alu SINE Alu 0 310 242 * 394 202 48 0 chr6 117183946 117184030 -65231212 + MER20 DNA MER1_type 129 216 -3 2086 113 10 23 chr6 117184310 117184620 -65230622 + AluSx SINE Alu 1 306 -6 236 30 30 0 chr6 117184866 117184899 -65230343 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr6 117186734 117186756 -65228486 + AT_rich Low_complexity Low_complexity 1 22 0 1187 244 120 0 chr6 117187139 117187276 -65227966 - AluJo SINE Alu -12 290 171 216 0 0 0 chr6 117187276 117187300 -65227942 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1187 244 120 0 chr6 117187300 117187420 -65227822 - AluJo SINE Alu -131 171 2 295 314 33 35 chr6 117188030 117188180 -65227062 + MIR SINE MIR 34 147 -61 655 239 90 56 chr6 117189911 117189942 -65225300 + MIR SINE MIR 21 49 -213 1329 97 135 24 chr6 117189942 117190149 -65225093 + MER30 DNA MER1_type 1 230 0 655 239 90 56 chr6 117190149 117190351 -65224891 + MIR SINE MIR 49 262 0 260 323 30 10 chr6 117190394 117190493 -65224749 + MIR SINE MIR 161 261 -1 300 270 186 38 chr6 117191275 117191503 -65223739 + MIR SINE MIR 4 262 0 253 238 191 24 chr6 117193509 117193593 -65221649 - L2 LINE L2 -3 3269 3172 571 245 102 59 chr6 117193956 117194417 -65220825 - L1MC5 LINE L1 -170 7791 7311 185 282 97 48 chr6 117194495 117194619 -65220623 - L2 LINE L2 -12 3301 3172 249 316 63 0 chr6 117195444 117195523 -65219719 + L2 LINE L2 3229 3312 -1 207 69 0 0 chr6 117195662 117195691 -65219551 + (TG)n Simple_repeat Simple_repeat 1 29 0 471 287 35 0 chr6 117196379 117196494 -65218748 + MIR SINE MIR 26 144 -118 291 214 42 107 chr6 117196975 117197143 -65218099 + L1MC5 LINE L1 7754 7910 -51 222 214 48 12 chr6 117197241 117197325 -65217917 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 31 0 0 60 chr6 117197328 117197359 -65217883 + AT_rich Low_complexity Low_complexity 1 29 -18 2021 123 21 7 chr6 117197359 117197643 -65217599 + AluSx SINE Alu 4 291 -21 31 0 0 60 chr6 117197643 117197661 -65217581 + AT_rich Low_complexity Low_complexity 29 47 0 632 247 37 42 chr6 117200725 117200915 -65214327 + MIR3 SINE MIR 15 203 -5 304 176 15 44 chr6 117203152 117203220 -65212022 - L2 LINE L2 0 3313 3248 2048 140 13 0 chr6 117203249 117203549 -65211693 - AluSx SINE Alu -8 304 1 1615 211 0 19 chr6 117204413 117204730 -65210512 - AluJb SINE Alu -1 311 1 610 220 113 30 chr6 117206533 117206701 -65208541 + MIR SINE MIR 81 262 0 409 287 167 23 chr6 117206730 117207030 -65208212 + L2 LINE L2 1851 2193 -1121 359 253 79 101 chr6 117207098 117207375 -65207867 + L2 LINE L2 3042 3312 -1 22 56 0 0 chr6 117207426 117207462 -65207780 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr6 117208162 117208194 -65207048 + AT_rich Low_complexity Low_complexity 1 32 0 761 248 190 39 chr6 117208287 117208702 -65206540 - MLT1J LTR MaLR -2 509 32 1852 149 3 47 chr6 117211052 117211373 -65203869 + AluJo SINE Alu 1 307 -5 1560 199 25 71 chr6 117211404 117211797 -65203445 - LTR40b LTR ERVL -85 377 3 864 204 6 6 chr6 117211855 117212027 -65203215 - AluSg/x SINE Alu -4 306 135 285 327 168 0 chr6 117214879 117214986 -65200256 + MIR SINE MIR 6 130 -132 272 269 0 39 chr6 117215600 117215678 -65199564 - L2 LINE L2 0 3313 3239 26 30 0 0 chr6 117216641 117216674 -65198568 + AT_rich Low_complexity Low_complexity 1 33 0 651 219 98 18 chr6 117217827 117217991 -65197251 + MER5B DNA MER1_type 1 177 -1 195 42 0 0 chr6 117218452 117218476 -65196766 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 218 358 11 0 chr6 117218918 117219013 -65196229 - MIR SINE MIR -8 254 159 835 210 85 54 chr6 117220223 117220447 -65194795 - MER8 DNA MER2_type 0 239 9 358 127 0 0 chr6 117220887 117220942 -65194300 - Alu SINE Alu -2 299 245 815 150 0 8 chr6 117220942 117221062 -65194180 - AluSq/x SINE Alu -193 120 2 1998 167 0 0 chr6 117221212 117221524 -65193718 - AluJb SINE Alu 0 312 1 25 31 0 0 chr6 117221533 117221565 -65193677 + AT_rich Low_complexity Low_complexity 1 32 0 377 303 40 23 chr6 117221748 117221958 -65193284 + MIR SINE MIR 17 228 -34 835 131 0 51 chr6 117222924 117223061 -65192181 + AluJo/FLAM SINE Alu 1 130 -172 857 59 0 0 chr6 117223064 117223166 -65192076 + AluY SINE Alu 1 102 -209 1644 71 0 0 chr6 117223219 117223416 -65191826 + AluY SINE Alu 102 298 -13 1263 99 0 0 chr6 117223420 117223581 -65191661 + AluSg/x SINE Alu 122 282 -30 271 313 34 61 chr6 117223965 117224112 -65191130 - MIR SINE MIR -78 184 42 3438 142 129 3 chr6 117224188 117224841 -65190401 - L1MC3 LINE L1 0 7785 7051 1635 139 98 0 chr6 117225431 117225705 -65189537 + AluJb SINE Alu 1 301 -11 1479 178 54 7 chr6 117227880 117228178 -65187064 + AluJo SINE Alu 1 312 0 394 302 62 47 chr6 117228359 117228551 -65186691 + MIR SINE MIR 14 208 -54 295 197 0 16 chr6 117228592 117228653 -65186589 - MIR SINE MIR -126 136 77 2406 63 0 25 chr6 117228663 117228982 -65186260 - AluY SINE Alu 0 311 1 2185 52 52 7 chr6 117231184 117231473 -65183769 + AluY SINE Alu 1 302 -9 514 265 20 0 chr6 117232837 117232988 -65182254 + MER103 DNA DNA 3 156 -10 181 380 90 0 chr6 117233257 117233357 -65181885 - L2 LINE L2 -21 3292 3184 345 294 25 17 chr6 117233802 117233921 -65181321 + MIR SINE MIR 67 186 -76 310 211 11 11 chr6 117235044 117235139 -65180103 + CT-rich Low_complexity Low_complexity 2 96 0 181 296 0 0 chr6 117236721 117236765 -65178477 + L2 LINE L2 3177 3220 -93 26 0 0 0 chr6 117238701 117238727 -65176515 + AT_rich Low_complexity Low_complexity 1 26 0 822 145 7 0 chr6 117238742 117238880 -65176362 - AluJb SINE Alu -173 139 1 802 136 17 0 chr6 117241088 117241206 -65174036 + FLAM_A SINE Alu 1 120 -13 2460 53 7 0 chr6 117241206 117241510 -65173732 - AluY SINE Alu -5 306 1 355 167 0 0 chr6 117241752 117241806 -65173436 - MER81 DNA DNA -31 83 30 183 129 0 0 chr6 117243081 117243112 -65172130 + (A)n Simple_repeat Simple_repeat 1 31 0 1642 74 5 0 chr6 117245828 117246043 -65169199 + AluSp SINE Alu 85 300 -13 22 0 0 0 chr6 117246149 117246171 -65169071 + AT_rich Low_complexity Low_complexity 1 22 0 208 319 56 0 chr6 117248220 117248292 -65166950 + MIR3 SINE MIR 94 169 -39 1095 245 37 53 chr6 117250696 117251100 -65164142 - L1MC4a LINE L1 -297 5824 5605 585 67 45 0 chr6 117251100 117251189 -65164053 - L1PB2 LINE L1 -4 6147 6055 1095 245 37 53 chr6 117251189 117251273 -65163969 - L1MC4a LINE L1 -516 5605 5521 738 190 56 0 chr6 117251307 117251449 -65163793 + FRAM SINE Alu 6 155 -21 282 305 42 63 chr6 117252244 117252406 -65162836 + MIR3 SINE MIR 15 174 -65 325 247 24 12 chr6 117252775 117252860 -65162382 + MIR SINE MIR 35 120 -88 205 297 14 14 chr6 117253165 117253239 -65162003 + GA-rich Low_complexity Low_complexity 2 75 0 354 23 0 0 chr6 117253531 117253574 -65161668 + (GA)n Simple_repeat Simple_repeat 1 43 0 318 50 0 0 chr6 117253573 117253613 -65161629 + (GGGGA)n Simple_repeat Simple_repeat 3 42 0 * 258 234 191 11 chr6 117254083 117254177 -65161065 + MIR SINE MIR 103 213 -49 310 122 20 0 chr6 117254196 117254245 -65160997 - L2 LINE L2 -8 3305 3256 767 269 17 0 chr6 117254315 117254490 -65160752 + MIR SINE MIR 81 258 -4 596 271 39 28 chr6 117254598 117254779 -65160463 + MER5A DNA MER1_type 7 189 0 1000 228 88 78 chr6 117254824 117255444 -65159798 + MLT1D LTR MaLR 5 621 -5 2241 77 0 0 chr6 117255458 117255771 -65159471 - AluSq SINE Alu 0 313 1 257 130 120 87 chr6 117256471 117256563 -65158679 - L1MC5 LINE L1 -30 7931 7837 2273 78 0 3 chr6 117256564 117256860 -65158382 - AluSg SINE Alu -15 295 1 320 315 0 43 chr6 117257098 117257190 -65158052 - MIR SINE MIR -85 123 36 527 253 53 13 chr6 117257613 117257763 -65157479 + MER5A DNA MER1_type 3 158 -31 299 298 16 0 chr6 117257801 117257925 -65157317 + (CACTA)n Simple_repeat Simple_repeat 3 128 0 1883 216 27 25 chr6 117258044 117258489 -65156753 - L1ME1 LINE L1 -1 6165 5720 2344 88 0 0 chr6 117259148 117259454 -65155788 + AluSx SINE Alu 1 306 -6 225 348 80 22 chr6 117259609 117259747 -65155495 + MIR SINE MIR 117 262 0 204 270 280 0 chr6 117262614 117262714 -65152528 - MIR3 SINE MIR -21 187 60 624 260 121 0 chr6 117263423 117263596 -65151646 - MIR SINE MIR -46 216 23 313 256 42 83 chr6 117264618 117264786 -65150456 + L1ME LINE L1 531 691 -5379 864 278 64 59 chr6 117264821 117265620 -65149622 + L1ME LINE L1 875 1677 -4584 2117 90 3 16 chr6 117266228 117266539 -65148703 + AluSc SINE Alu 1 307 -2 29 21 0 21 chr6 117266629 117266648 -65148594 + AT_rich Low_complexity Low_complexity 1 19 -27 1746 148 4 0 chr6 117266648 117266918 -65148324 + AluJb SINE Alu 12 282 -30 29 21 0 21 chr6 117266918 117266945 -65148297 + AT_rich Low_complexity Low_complexity 19 46 0 255 257 75 80 chr6 117267000 117267187 -65148055 + MIR SINE MIR 29 214 -48 395 266 18 0 chr6 117267395 117267508 -65147734 - MER103 DNA DNA -42 124 10 799 330 78 29 chr6 117267530 117268120 -65147122 + L2 LINE L2 2147 2765 -549 234 287 39 85 chr6 117268178 117268307 -65146935 + L2 LINE L2 2929 3051 -262 1535 111 0 29 chr6 117268392 117268636 -65146606 - AluSg/x SINE Alu -5 307 71 983 116 0 37 chr6 117268636 117268800 -65146442 - AluSq SINE Alu -155 158 1 610 285 19 115 chr6 117269473 117269848 -65145394 + L2 LINE L2 2917 3255 -17 796 284 87 41 chr6 117271058 117271520 -65143722 - ERVL LTR ERVL -497 5267 4785 538 225 115 48 chr6 117271532 117271741 -65143501 + LTR16A1 LTR ERVL 235 457 0 364 237 144 52 chr6 117272113 117272307 -65142935 - MIR SINE MIR -35 227 16 220 269 202 29 chr6 117272910 117273014 -65142228 + L2 LINE L2 3150 3271 -1 618 297 114 5 chr6 117273055 117273257 -65141985 + MIR SINE MIR 18 241 -21 402 170 170 38 chr6 117273861 117273967 -65141275 - L2 LINE L2 -1 3312 3193 1037 154 89 9 chr6 117274057 117274271 -65140971 + L1MB2 LINE L1 5941 6171 0 590 233 13 69 chr6 117274604 117274763 -65140479 + MIR SINE MIR 21 170 -92 1672 153 45 0 chr6 117274898 117275166 -65140076 + AluJb SINE Alu 1 280 -32 456 291 104 14 chr6 117275867 117276087 -65139155 - MIR SINE MIR -10 252 13 1230 348 124 17 chr6 117276530 117277237 -65138005 + L3 LINE CR1 86 868 -709 1292 196 16 0 chr6 117277482 117277727 -65137515 - AluJo SINE Alu -17 295 47 350 356 148 4 chr6 117277934 117278212 -65137030 + L3 LINE CR1 960 1277 -300 593 283 113 4 chr6 117278308 117278538 -65136704 + MIR SINE MIR 2 256 -6 1116 118 0 15 chr6 117278762 117278957 -65136285 - L1MA7 LINE L1 -1 6290 6099 230 280 119 119 chr6 117279090 117279376 -65135866 - MER115 DNA AcHobo -223 470 185 740 240 120 75 chr6 117279808 117280249 -65134993 + LTR33A LTR ERVL 13 473 -50 335 336 20 41 chr6 117280314 117280460 -65134782 - MIR3 SINE MIR -63 145 3 324 0 0 0 chr6 117280852 117280888 -65134354 + (TC)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr6 117280888 117280910 -65134332 + (TG)n Simple_repeat Simple_repeat 2 23 0 2663 19 0 0 chr6 117281212 117281519 -65133723 - AluYa5 SINE Alu -4 307 1 2143 100 10 0 chr6 117282821 117283121 -65132121 - AluSx SINE Alu -9 303 1 306 258 145 24 chr6 117284105 117284229 -65131013 + MIR SINE MIR 76 214 -48 201 94 125 0 chr6 117284247 117284279 -65130963 + MIR SINE MIR 125 160 -102 729 110 0 0 chr6 117284529 117284638 -65130604 + (TA)n Simple_repeat Simple_repeat 1 109 0 21 0 0 0 chr6 117284840 117284861 -65130381 + AT_rich Low_complexity Low_complexity 1 21 0 287 227 126 8 chr6 117284861 117284980 -65130262 - MER103 DNA DNA -31 135 3 497 267 76 43 chr6 117285550 117285760 -65129482 - MIR SINE MIR -26 236 20 4616 215 55 25 chr6 117285875 117286353 -65128889 + L1ME1 LINE L1 3875 4337 -1809 1884 131 0 53 chr6 117286353 117286673 -65128569 - AluSx SINE Alu -9 303 1 4616 215 55 25 chr6 117286673 117287444 -65127798 + L1ME1 LINE L1 4337 5162 -984 1290 154 10 0 chr6 117287449 117287650 -65127592 - AluJo SINE Alu -23 289 87 1929 207 59 38 chr6 117287650 117287926 -65127316 + L1ME1 LINE L1 5152 5421 -745 2127 94 23 3 chr6 117287926 117288225 -65127017 + AluY SINE Alu 1 305 -6 1929 207 59 38 chr6 117288225 117288578 -65126664 + L1ME1 LINE L1 5421 5777 -389 1736 105 83 67 chr6 117288593 117288794 -65126448 - MER44D DNA MER2_type -1902 589 393 1953 103 0 79 chr6 117288794 117289123 -65126119 + AluSq SINE Alu 1 303 -10 1736 105 83 67 chr6 117289123 117289235 -65126007 - MER44D DNA MER2_type -2098 393 1 881 282 71 25 chr6 117289243 117289608 -65125634 + L1ME1 LINE L1 5779 6160 -6 328 349 67 0 chr6 117289934 117290083 -65125159 + L3 LINE CR1 535 693 -884 259 260 96 29 chr6 117290083 117290187 -65125055 - L2 LINE L2 -4 3309 3199 639 220 88 28 chr6 117290745 117290927 -65124315 + MIR SINE MIR 19 211 -51 1114 164 41 50 chr6 117291245 117291465 -65123777 + MER20 DNA MER1_type 2 219 0 653 220 54 38 chr6 117291479 117291665 -65123577 + MIR SINE MIR 48 236 -26 364 331 84 53 chr6 117291767 117291894 -65123348 - L3 LINE CR1 -349 1228 1106 1838 82 0 0 chr6 117291894 117292126 -65123116 + AluSc SINE Alu 60 291 -18 364 331 84 53 chr6 117292126 117292318 -65122924 - L3 LINE CR1 -471 1106 899 1992 124 26 16 chr6 117292659 117292966 -65122276 + AluSx SINE Alu 1 310 -2 604 220 161 0 chr6 117293973 117294159 -65121083 - L1ME3A LINE L1 0 6170 5955 321 98 33 16 chr6 117294203 117294264 -65120978 - L1MD2 LINE L1 -10 6349 6288 224 392 10 0 chr6 117294353 117294450 -65120792 + MIR SINE MIR 26 123 -139 489 303 168 0 chr6 117295875 117296083 -65119159 - MIR SINE MIR 0 262 20 265 272 0 149 chr6 117296273 117296374 -65118868 - MIR SINE MIR -1 261 201 1023 175 33 0 chr6 117296374 117296557 -65118685 - MER5A DNA MER1_type 0 189 1 265 272 0 149 chr6 117296557 117296650 -65118592 - MIR SINE MIR -61 201 96 926 106 0 77 chr6 117297928 117298098 -65117144 + FRAM SINE Alu 20 176 0 336 294 108 0 chr6 117298098 117298200 -65117042 + MIR SINE MIR 34 146 -116 215 274 53 21 chr6 117298475 117298570 -65116672 - MIR3 SINE MIR -19 189 92 2344 56 0 29 chr6 117298890 117299196 -65116046 + AluY SINE Alu 1 297 -14 27 29 0 0 chr6 117299689 117299723 -65115519 + AT_rich Low_complexity Low_complexity 1 34 0 2400 70 3 6 chr6 117299905 117300219 -65115023 + AluSp SINE Alu 1 313 0 3442 108 61 56 chr6 117300814 117301423 -65113819 - LTR9 LTR ERV1 0 612 1 369 333 43 0 chr6 117302068 117302230 -65113012 + MER117 DNA MER1_type 1 169 -28 2137 106 0 3 chr6 117302953 117303254 -65111988 + AluSg SINE Alu 1 300 -10 288 0 0 0 chr6 117303397 117303429 -65111813 + (TG)n Simple_repeat Simple_repeat 2 33 0 512 59 0 94 chr6 117305132 117305217 -65110025 - Alu SINE Alu -3 309 233 2579 39 0 3 chr6 117305221 117305533 -65109709 - AluY SINE Alu 0 311 1 1744 142 21 3 chr6 117306229 117306517 -65108725 + AluSx SINE Alu 1 293 -19 260 189 0 19 chr6 117306517 117306570 -65108672 + GA-rich Low_complexity Low_complexity 3 54 0 231 114 0 0 chr6 117306574 117306609 -65108633 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 192 293 127 83 chr6 117307835 117308016 -65107226 + MIR SINE MIR 20 208 -54 313 309 6 3 chr6 117308164 117308275 -65106967 + MIR SINE MIR 32 145 -63 309 258 157 0 chr6 117308326 117308415 -65106827 - L2 LINE L2 -1 3312 3210 186 143 0 0 chr6 117309091 117309126 -65106116 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 359 277 50 20 chr6 117310334 117310435 -65104807 - L2 LINE L2 0 3272 3169 208 214 0 24 chr6 117312493 117312535 -65102707 + polypurine Low_complexity Low_complexity 6 46 0 351 118 171 26 chr6 117312593 117312669 -65102573 + L1MB4 LINE L1 6081 6167 -13 353 179 39 13 chr6 117312677 117312755 -65102487 + L1MB8 LINE L1 6093 6172 -6 318 193 35 0 chr6 117315186 117315243 -65099999 - MIR SINE MIR -162 100 42 2074 76 7 17 chr6 117316274 117316562 -65098680 - AluSq SINE Alu -6 307 23 448 296 131 29 chr6 117317124 117317274 -65097968 + MLT1J LTR MaLR 166 299 -212 2240 104 0 0 chr6 117317274 117317573 -65097669 + AluSc SINE Alu 1 299 -10 448 296 131 29 chr6 117317573 117317736 -65097506 + MLT1J LTR MaLR 299 511 0 237 338 21 63 chr6 117318699 117318747 -65096495 - MIR3 SINE MIR -9 199 151 1817 120 69 4 chr6 117318747 117319021 -65096221 - AluSq SINE Alu -21 292 1 237 338 21 63 chr6 117319021 117319114 -65096128 - MIR3 SINE MIR -57 151 64 2202 86 3 0 chr6 117319178 117319470 -65095772 - AluY SINE Alu -17 294 2 633 221 67 3 chr6 117319487 117319665 -65095577 - MIR SINE MIR -21 241 4 481 226 103 7 chr6 117319840 117319986 -65095256 + MER103 DNA DNA 5 164 -2 412 220 220 0 chr6 117319997 117320115 -65095127 - Charlie1 DNA MER1_type -2577 184 41 743 144 0 0 chr6 117320115 117320226 -65095016 + FLAM_C SINE Alu 1 111 -32 30 0 0 0 chr6 117320504 117320534 -65094708 + AT_rich Low_complexity Low_complexity 1 30 0 201 213 0 0 chr6 117320553 117320600 -65094642 + CT-rich Low_complexity Low_complexity 1 47 0 1934 137 3 3 chr6 117321082 117321381 -65093861 - AluSx SINE Alu -13 299 1 2148 128 0 0 chr6 117321986 117322292 -65092950 + AluSx SINE Alu 3 308 -4 392 162 143 19 chr6 117322320 117322425 -65092817 - L1ME4a LINE L1 -19 6102 5985 1979 237 94 177 chr6 117323391 117324338 -65090904 + L2 LINE L2 647 1671 -1642 1850 134 41 0 chr6 117324338 117324630 -65090612 + AluSx SINE Alu 1 304 -8 1979 237 94 177 chr6 117324630 117324927 -65090315 + L2 LINE L2 1671 1991 -1322 463 254 57 0 chr6 117324927 117325049 -65090193 + MLT1J2 LTR MaLR 1 129 -321 1979 237 94 177 chr6 117325049 117325157 -65090085 + L2 LINE L2 1991 2106 -1207 413 279 116 7 chr6 117325157 117325304 -65089938 + MLT1J2 LTR MaLR 280 442 -8 1979 237 94 177 chr6 117325304 117326540 -65088702 + L2 LINE L2 2106 3312 -1 216 0 0 0 chr6 117327512 117327536 -65087706 + (CAA)n Simple_repeat Simple_repeat 1 24 0 437 272 44 45 chr6 117327538 117327714 -65087528 - MIR SINE MIR -55 207 33 234 250 0 62 chr6 117328017 117328081 -65087161 + MIR SINE MIR 40 99 -109 656 267 198 78 chr6 117328162 117328946 -65086296 + L3 LINE CR1 650 1527 -50 295 157 0 0 chr6 117329219 117329270 -65085972 - AluJo SINE Alu -5 297 247 1224 133 6 11 chr6 117329271 117329451 -65085791 - AluJo SINE Alu -133 179 1 315 252 81 27 chr6 117331085 117331196 -65084046 - MIR SINE MIR -62 146 30 839 311 108 23 chr6 117331557 117332029 -65083213 + MLT1K LTR MaLR 53 564 -24 272 247 13 13 chr6 117332151 117332228 -65083014 + L1MC4a LINE L1 30 106 -6290 1462 256 40 14 chr6 117332345 117332791 -65082451 + L1M4 LINE L1 4617 5074 -1072 1868 155 0 38 chr6 117333254 117333570 -65081672 + AluJb SINE Alu 1 304 -8 1685 286 40 39 chr6 117333570 117334139 -65081103 + MLT1G LTR MaLR 18 587 -3 307 285 43 59 chr6 117334830 117335016 -65080226 + L1MC4a LINE L1 2436 2618 -3597 23 0 0 0 chr6 117335608 117335631 -65079611 + AT_rich Low_complexity Low_complexity 1 23 0 326 278 98 52 chr6 117335637 117336044 -65079198 + L1MC4a LINE L1 3401 3826 -2389 * 474 279 92 49 chr6 117336043 117336380 -65078862 + L1MC4a LINE L1 4132 4508 -1707 644 229 0 15 chr6 117336380 117336511 -65078731 - FLAM_A SINE Alu -1 132 4 474 279 92 49 chr6 117336511 117336785 -65078457 + L1MC4a LINE L1 4508 4769 -1446 2573 193 62 44 chr6 117336795 117337408 -65077834 - MLT1E3 LTR MaLR 0 624 1 1654 122 4 42 chr6 117337495 117337758 -65077484 + AluJo SINE Alu 47 299 -13 1467 124 0 23 chr6 117337845 117338084 -65077158 + AluSg/x SINE Alu 73 306 0 21 0 0 0 chr6 117338238 117338259 -65076983 + AT_rich Low_complexity Low_complexity 1 21 0 349 268 94 14 chr6 117338264 117338402 -65076840 - MLT1J2 LTR MaLR -21 429 281 1238 144 53 49 chr6 117338447 117338619 -65076623 + MER33 DNA MER1_type 61 236 -2349 2207 122 3 0 chr6 117338619 117338923 -65076319 - AluSx SINE Alu -7 305 1 1238 144 53 49 chr6 117338923 117339013 -65076229 + MER33 DNA MER1_type 236 324 0 663 215 14 7 chr6 117339082 117339226 -65076016 - MLT1J1 LTR MaLR -301 145 1 180 176 0 0 chr6 117339290 117339324 -65075918 + GA-rich Low_complexity Low_complexity 4 37 0 42 36 0 0 chr6 117339338 117339394 -65075848 + AT_rich Low_complexity Low_complexity 1 56 0 864 282 157 33 chr6 117339587 117340161 -65075081 + L1MC4a LINE L1 5329 5973 -1904 2402 98 0 0 chr6 117340259 117340565 -65074677 + AluSx SINE Alu 1 306 -6 669 274 33 17 chr6 117340716 117341042 -65074200 - LTR16B LTR ERVL -50 414 35 448 302 20 13 chr6 117341199 117341348 -65073894 - L2 LINE L2 0 3313 3164 1819 160 10 10 chr6 117341522 117341834 -65073408 + AluJo SINE Alu 1 312 0 277 173 19 0 chr6 117341919 117341971 -65073271 - Charlie5 DNA MER1_type -27 2585 2533 2193 112 10 0 chr6 117342777 117343073 -65072169 + AluSx SINE Alu 1 299 -13 267 266 9 37 chr6 117343396 117343505 -65071737 + C-rich Low_complexity Low_complexity 3 108 0 291 191 0 0 chr6 117344195 117344258 -65070984 + (CA)n Simple_repeat Simple_repeat 1 63 0 191 374 37 19 chr6 117344876 117344983 -65070259 - L3b LINE CR1 -25 1558 1450 274 309 0 0 chr6 117345675 117345759 -65069483 + (TG)n Simple_repeat Simple_repeat 2 85 0 1329 300 61 28 chr6 117346531 117347649 -65067593 - L1ME3A LINE L1 -234 5936 4777 24 32 0 0 chr6 117349409 117349440 -65065802 + AT_rich Low_complexity Low_complexity 1 31 0 346 97 0 113 chr6 117349440 117349502 -65065740 + Alu SINE Alu 241 295 -7 330 153 0 0 chr6 117349502 117349561 -65065681 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 37 23 0 0 chr6 117349563 117349607 -65065635 + AT_rich Low_complexity Low_complexity 1 44 0 469 249 27 7 chr6 117349636 117349790 -65065452 + L1M4 LINE L1 4834 4995 -1151 495 250 69 47 chr6 117349791 117349847 -65065395 - L1ME3A LINE L1 -842 1665 1612 976 178 0 13 chr6 117349847 117350004 -65065238 + FRAM SINE Alu 1 155 -11 495 250 69 47 chr6 117350004 117350386 -65064856 - L1ME3A LINE L1 -895 1612 1550 330 222 21 97 chr6 117350394 117350429 -65064813 + L1M4 LINE L1 3956 3992 -2154 1847 179 0 3 chr6 117350429 117350730 -65064512 + AluJo SINE Alu 2 301 -11 330 222 21 97 chr6 117350730 117350838 -65064404 + L1M4 LINE L1 3992 4088 -2058 1807 140 32 16 chr6 117351372 117351686 -65063556 - L1MB8 LINE L1 0 6178 5860 3366 153 50 6 chr6 117351686 117352467 -65062775 - L1MB7 LINE L1 -1 6154 5319 1096 133 0 0 chr6 117352469 117352620 -65062622 - FRAM SINE Alu -22 154 4 1846 158 14 100 chr6 117352621 117352966 -65062276 - L1MB7 LINE L1 -814 5332 5045 2253 100 20 0 chr6 117352966 117353266 -65061976 + AluSg SINE Alu 1 306 -4 1846 158 14 100 chr6 117353266 117353438 -65061804 - L1MB7 LINE L1 -1101 5045 4860 50 0 0 0 chr6 117353492 117353542 -65061700 + AT_rich Low_complexity Low_complexity 1 50 0 267 190 0 0 chr6 117353543 117353601 -65061641 + (TA)n Simple_repeat Simple_repeat 1 58 0 1538 208 0 33 chr6 117353601 117353904 -65061338 - AluJo SINE Alu -19 293 1 35 41 0 0 chr6 117353906 117353955 -65061287 + AT_rich Low_complexity Low_complexity 1 49 0 2022 187 39 11 chr6 117353963 117354428 -65060814 - L1MB7 LINE L1 -1334 4812 4335 474 318 99 21 chr6 117354454 117354949 -65060293 - L1MEd LINE L1 -4653 1657 1083 1418 167 4 4 chr6 117354974 117355202 -65060040 + AluJb SINE Alu 1 228 -84 288 34 34 51 chr6 117355209 117355268 -65059974 + (TA)n Simple_repeat Simple_repeat 2 59 0 469 333 75 47 chr6 117355601 117355856 -65059386 + MIR SINE MIR 1 262 0 431 312 29 12 chr6 117356876 117357049 -65058193 - MIR SINE MIR -56 206 31 208 216 0 0 chr6 117357349 117357386 -65057856 + polypurine Low_complexity Low_complexity 3 39 0 2335 104 0 0 chr6 117358465 117358772 -65056470 - AluSq SINE Alu -6 307 1 363 301 49 35 chr6 117358782 117359008 -65056234 - L1MC4a LINE L1 -1876 5932 5704 251 314 0 14 chr6 117359012 117359082 -65056160 - L1MC4a LINE L1 -2144 5664 5596 206 389 14 0 chr6 117362318 117362390 -65052852 - L2 LINE L2 -84 3188 3116 190 286 79 16 chr6 117362677 117362740 -65052502 + MIR SINE MIR 1 67 -195 1188 221 44 66 chr6 117362830 117363105 -65052137 + MLT1I LTR MaLR 98 367 -42 1838 108 98 11 chr6 117363105 117363382 -65051860 + AluSg SINE Alu 1 301 -9 1188 221 44 66 chr6 117363382 117363423 -65051819 + MLT1I LTR MaLR 367 407 -2 410 287 158 6 chr6 117363423 117363587 -65051655 + MIR SINE MIR 69 257 -5 418 256 62 44 chr6 117363594 117363628 -65051614 + L1ME4a LINE L1 5956 5988 -133 2455 173 31 12 chr6 117363628 117364045 -65051197 - MSTB LTR MaLR 0 426 2 418 256 62 44 chr6 117364045 117364170 -65051072 + L1ME4a LINE L1 5988 6118 -3 1339 142 118 0 chr6 117364548 117364759 -65050483 + MER46A DNA MER2_type 1 236 0 5015 250 72 49 chr6 117364880 117367073 -65048169 - L2 LINE L2 -17 3296 1056 2404 200 92 22 chr6 117367142 117367696 -65047546 - MLT1E LTR MaLR 0 593 1 856 203 18 6 chr6 117368076 117368239 -65047003 + FRAM SINE Alu 1 165 -11 422 211 10 4 chr6 117369434 117369537 -65045705 - L1ME4a LINE L1 -40 6047 1203 279 222 0 0 chr6 117369957 117370011 -65045231 - L1MC4a LINE L1 -1870 5938 5885 29 47 0 0 chr6 117370658 117370701 -65044541 + AT_rich Low_complexity Low_complexity 1 43 0 264 192 0 55 chr6 117370902 117370975 -65044267 + MIR3 SINE MIR 118 186 -22 327 121 0 0 chr6 117372203 117372261 -65042981 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 1806 168 11 0 chr6 117372261 117372546 -65042696 - AluJb SINE Alu -24 288 1 668 241 32 21 chr6 117373193 117373380 -65041862 - MER5A DNA MER1_type 0 189 1 1015 170 0 12 chr6 117373609 117373627 -65041615 - AluJb SINE Alu -9 303 286 180 0 0 0 chr6 117373627 117373647 -65041595 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1015 170 0 12 chr6 117373647 117373799 -65041443 - AluJb SINE Alu -26 286 135 7948 28 0 4 chr6 117374452 117375422 -65039820 - L1PA5 LINE L1 -5 6149 5174 24233 76 10 1 chr6 117375456 117378063 -65037179 - L1PA7 LINE L1 -7 6147 3488 243 0 0 0 chr6 117378063 117378090 -65037152 + (TTG)n Simple_repeat Simple_repeat 1 27 0 24233 76 10 1 chr6 117378090 117379522 -65035720 - L1PA7 LINE L1 -2666 3488 2070 2532 128 8 16 chr6 117379637 117380004 -65035238 - THE1B LTR MaLR 0 364 1 2692 137 60 5 chr6 117381064 117381233 -65034009 + MSTB LTR MaLR 1 159 -267 2038 100 7 11 chr6 117381233 117381504 -65033738 + AluSx SINE Alu 27 296 -16 2692 137 60 5 chr6 117381504 117381737 -65033505 + MSTB LTR MaLR 159 425 -1 2001 139 16 13 chr6 117381803 117382153 -65033089 - AluSx SINE Alu 0 352 2 1681 173 3 53 chr6 117382762 117383131 -65032111 - AluJo SINE Alu 0 312 1 21 0 0 0 chr6 117383202 117383223 -65032019 + AT_rich Low_complexity Low_complexity 1 21 0 205 310 35 53 chr6 117383232 117383345 -65031897 + L2 LINE L2 2711 2821 -493 2232 120 0 0 chr6 117383601 117383900 -65031342 - AluSx SINE Alu -12 300 2 2351 87 10 0 chr6 117384371 117384670 -65030572 + AluSx SINE Alu 1 302 -10 2485 73 3 0 chr6 117386097 117386398 -65028844 + AluY SINE Alu 1 302 -9 418 104 30 0 chr6 117386607 117386674 -65028568 - MADE1 DNA Mariner -11 69 1 22 35 0 0 chr6 117386902 117386931 -65028311 + AT_rich Low_complexity Low_complexity 1 29 0 235 213 28 135 chr6 117387174 117387250 -65027992 + L1ME2 LINE L1 1461 1517 -4879 2127 126 0 0 chr6 117387250 117387535 -65027707 + AluSx SINE Alu 2 286 -26 235 213 28 135 chr6 117387535 117387599 -65027643 + L1ME2 LINE L1 1517 1586 -4810 2805 217 73 67 chr6 117387607 117388521 -65026721 + L1ME2 LINE L1 3604 4526 -1689 2432 84 0 3 chr6 117388521 117388832 -65026410 + AluY SINE Alu 1 310 -1 2805 217 73 67 chr6 117388832 117388942 -65026300 + L1ME2 LINE L1 4526 4634 -1581 243 209 45 0 chr6 117388944 117389011 -65026231 + L1ME2 LINE L1 4708 4777 -1438 1983 176 104 42 chr6 117389022 117389485 -65025757 + MLT1D LTR MaLR 1 495 -10 2427 111 119 10 chr6 117389485 117389871 -65025371 + MSTA LTR MaLR 1 428 0 3114 220 48 38 chr6 117389908 117391287 -65023955 + L1ME2 LINE L1 4822 6219 -14 2238 101 0 0 chr6 117391308 117391595 -65023647 - AluSg SINE Alu -23 287 1 2134 113 3 0 chr6 117391602 117391884 -65023358 - AluSx SINE Alu -24 288 6 328 226 58 29 chr6 117391917 117392054 -65023188 + L1MC5 LINE L1 7777 7917 -44 1957 80 122 4 chr6 117392077 117392339 -65022903 + AluSc SINE Alu 1 293 -6 1941 158 0 7 chr6 117392711 117393014 -65022228 + AluJo SINE Alu 1 301 -11 858 255 128 65 chr6 117394162 117394466 -65020776 - MLT1L LTR MaLR -12 603 257 2355 55 11 0 chr6 117394466 117394741 -65020501 - AluY SINE Alu -15 296 19 858 255 128 65 chr6 117394741 117394911 -65020331 - MLT1L LTR MaLR -358 257 99 1165 291 122 32 chr6 117394976 117395478 -65019764 + LTR67 LTR ERVL 2 548 -9 941 109 141 33 chr6 117395869 117395920 -65019322 + L1PB3 LINE L1 5951 5995 -159 2457 35 7 7 chr6 117395920 117396210 -65019032 + AluY SINE Alu 14 303 -8 941 109 141 33 chr6 117396210 117396342 -65018900 + L1PB3 LINE L1 5995 6154 0 252 273 0 13 chr6 117396772 117396849 -65018393 - L1MC/D LINE L1 -689 5553 5478 2027 178 66 11 chr6 117398063 117398535 -65016707 + L1MB5 LINE L1 4900 5397 -749 958 182 6 0 chr6 117398536 117398695 -65016547 + FRAM SINE Alu 1 159 -17 4004 175 52 12 chr6 117398695 117399442 -65015800 + L1MB5 LINE L1 5390 6166 -8 363 304 22 7 chr6 117399781 117399916 -65015326 + GA-rich Low_complexity Low_complexity 3 139 0 1163 143 16 78 chr6 117402258 117402503 -65012739 - L1MD2 LINE L1 -10 6349 6120 2611 55 0 0 chr6 117402604 117402912 -65012330 - AluY SINE Alu -3 308 1 285 349 64 0 chr6 117403739 117403848 -65011394 - MIR3 SINE MIR -12 196 81 260 293 138 0 chr6 117403861 117403977 -65011265 + MIR SINE MIR 81 212 -50 3387 52 0 2 chr6 117404516 117404921 -65010321 + MLT2A1 LTR ERVL 1 404 -40 390 162 0 0 chr6 117404927 117405001 -65010241 + (TA)n Simple_repeat Simple_repeat 2 75 0 232 222 22 22 chr6 117405003 117405093 -65010149 - L1MC4 LINE L1 -1339 6703 6614 392 221 9 0 chr6 117405122 117405235 -65010007 + (TA)n Simple_repeat Simple_repeat 1 114 0 303 292 0 22 chr6 117405238 117405327 -65009915 - L1MC4 LINE L1 -1341 6701 6615 322 78 78 0 chr6 117405345 117405396 -65009846 + MLT2A1 LTR ERVL 390 444 0 408 305 85 20 chr6 117405405 117405605 -65009637 + MIR SINE MIR 48 260 -2 246 271 45 73 chr6 117406073 117406250 -65008992 - MER5B DNA MER1_type -4 174 3 583 239 55 47 chr6 117406465 117406720 -65008522 + MLT1L LTR MaLR 23 279 -336 427 236 67 93 chr6 117408153 117408378 -65006864 + MIR SINE MIR 43 261 -1 241 200 22 0 chr6 117409798 117409843 -65005399 + L2 LINE L2 3253 3298 -15 356 236 109 63 chr6 117410279 117410453 -65004789 - MIR SINE MIR 0 262 81 213 253 101 13 chr6 117411239 117411318 -65003924 + L2 LINE L2 3222 3307 -6 1108 46 0 0 chr6 117411704 117411835 -65003407 + L1PA6 LINE L1 6023 6153 -1 770 246 70 5 chr6 117412005 117412204 -65003038 - MIR SINE MIR -38 224 13 222 172 0 198 chr6 117413146 117413262 -65001980 - L2 LINE L2 -161 3111 3019 788 131 37 0 chr6 117413959 117414066 -65001176 + FLAM_C SINE Alu 8 118 -25 22 0 0 0 chr6 117414067 117414089 -65001153 + AT_rich Low_complexity Low_complexity 1 22 0 272 281 22 34 chr6 117414094 117414183 -65001059 + MIR SINE MIR 156 243 -19 22 88 0 0 chr6 117415195 117415252 -64999990 + AT_rich Low_complexity Low_complexity 1 57 0 183 42 0 0 chr6 117415492 117415516 -64999726 + MER5A DNA MER1_type 100 123 -66 7123 140 17 18 chr6 117416866 117417532 -64997710 - L1MC1 LINE L1 -5 6328 5663 2464 70 0 10 chr6 117417532 117417844 -64997398 - AluY SINE Alu -2 309 1 7123 140 17 18 chr6 117417844 117418610 -64996632 - L1MC1 LINE L1 -670 5663 4906 2443 219 12 2 chr6 117419094 117419652 -64995590 - L1MC1 LINE L1 -1226 4920 4357 1706 214 64 31 chr6 117419654 117420107 -64995135 - L1MC1 LINE L1 -1839 4307 3840 21 0 0 0 chr6 117420788 117420809 -64994433 + AT_rich Low_complexity Low_complexity 1 21 0 198 171 12 24 chr6 117420916 117420998 -64994244 + (TA)n Simple_repeat Simple_repeat 2 82 0 1752 234 111 27 chr6 117421041 117421755 -64993487 - HAL1 LINE L1 -85 2422 1649 2373 226 123 82 chr6 117421758 117422016 -64993226 - HAL1 LINE L1 -1041 1466 1220 2122 140 3 0 chr6 117422016 117422316 -64992926 + AluSp SINE Alu 1 301 -12 2373 226 123 82 chr6 117422316 117422674 -64992568 - HAL1 LINE L1 -1287 1220 878 2488 70 0 0 chr6 117422674 117422975 -64992267 + AluY SINE Alu 1 301 -10 2373 226 123 82 chr6 117422975 117423513 -64991729 - HAL1 LINE L1 -1629 878 264 231 125 0 0 chr6 117423550 117423590 -64991652 + (TG)n Simple_repeat Simple_repeat 1 40 0 825 250 9 18 chr6 117423598 117423826 -64991416 - L1MC4 LINE L1 -126 7916 7691 2261 123 3 0 chr6 117424355 117424665 -64990577 + AluSx SINE Alu 1 311 -1 286 194 0 42 chr6 117424938 117425010 -64990232 + GA-rich Low_complexity Low_complexity 6 74 0 523 161 0 0 chr6 117425426 117425513 -64989729 - AluSx SINE Alu 0 310 224 1113 151 0 0 chr6 117425514 117425673 -64989569 - AluSx SINE Alu -150 162 4 362 242 31 124 chr6 117426043 117426237 -64989005 - L1ME3A LINE L1 -50 6120 5945 2529 84 0 0 chr6 117426532 117426840 -64988402 - AluSc SINE Alu 0 309 2 189 74 0 0 chr6 117426892 117426919 -64988323 + (TG)n Simple_repeat Simple_repeat 2 28 0 2150 101 56 0 chr6 117427292 117427578 -64987664 - AluSx SINE Alu -10 302 1 2105 136 7 0 chr6 117428032 117428334 -64986908 + AluJo SINE Alu 1 304 -8 227 340 103 0 chr6 117428893 117428990 -64986252 - MIR SINE MIR -86 176 70 2159 117 0 13 chr6 117429780 117430080 -64985162 + AluSp SINE Alu 1 296 -17 1108 119 6 12 chr6 117430081 117430231 -64985011 + AluSq SINE Alu 134 305 -8 193 40 0 0 chr6 117430231 117430256 -64984986 + (TAAA)n Simple_repeat Simple_repeat 2 152 0 189 240 20 20 chr6 117430401 117430451 -64984791 + L2 LINE L2 3219 3268 -4 2116 124 0 0 chr6 117430530 117430812 -64984430 - AluSx SINE Alu -30 282 1 2264 100 10 0 chr6 117431521 117431821 -64983421 + AluSx SINE Alu 1 303 -9 917 205 71 8 chr6 117432132 117432371 -64982871 - MER112 DNA MER1_type -1 255 2 758 233 66 35 chr6 117432525 117432753 -64982489 + MER102b DNA MER1_type 82 316 -25 571 188 11 6 chr6 117432763 117432944 -64982298 + GA-rich Low_complexity Low_complexity 1 182 0 664 269 124 42 chr6 117433082 117433535 -64981707 - L2 LINE L2 -17 3296 2807 314 270 0 50 chr6 117433622 117433722 -64981520 + MER5B DNA MER1_type 1 95 -83 442 231 122 14 chr6 117435155 117435302 -64979940 - MER103 DNA DNA -1 165 3 1222 196 172 3 chr6 117435345 117435636 -64979606 - MER58B DNA MER1_type -1 340 1 867 234 6 0 chr6 117435827 117435994 -64979248 - MER45A DNA AcHobo -9 169 2 298 329 50 77 chr6 117436009 117436307 -64978935 + L2 LINE L2 2970 3259 -13 333 252 93 28 chr6 117436593 117436700 -64978542 + L2 LINE L2 3200 3313 0 373 273 60 27 chr6 117437035 117437185 -64978057 + MIR3 SINE MIR 37 191 -17 525 277 163 71 chr6 117437641 117438089 -64977153 + L2 LINE L2 2820 3308 -5 246 156 0 0 chr6 117441175 117441220 -64974022 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 668 232 6 0 chr6 117441252 117441429 -64973813 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 855 192 0 0 chr6 117441442 117441619 -64973623 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 779 198 4 0 chr6 117441658 117441917 -64973325 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 302 229 51 76 chr6 117442075 117442193 -64973049 + MIR SINE MIR 35 149 -113 912 275 51 55 chr6 117442541 117442974 -64972268 + MLT1K LTR MaLR 97 527 -61 546 179 35 23 chr6 117442977 117443150 -64972092 + CT-rich Low_complexity Low_complexity 1 175 0 2241 112 7 0 chr6 117443150 117443453 -64971789 - AluSc SINE Alu -4 305 1 674 151 28 22 chr6 117443483 117443662 -64971580 + CT-rich Low_complexity Low_complexity 1 180 0 2402 89 0 10 chr6 117444481 117444784 -64970458 + AluY SINE Alu 4 303 -8 339 158 13 40 chr6 117445096 117445172 -64970070 - MIR SINE MIR -25 237 164 2814 228 72 83 chr6 117445172 117446361 -64968881 + HAL1b LINE L1 171 1346 -2 557 207 240 0 chr6 117446568 117446718 -64968524 + MER5A DNA MER1_type 4 189 0 213 39 0 0 chr6 117447550 117447576 -64967666 + (TG)n Simple_repeat Simple_repeat 2 27 0 1607 128 128 4 chr6 117447745 117448025 -64967217 + AluSg SINE Alu 1 311 0 1019 196 37 0 chr6 117448160 117448349 -64966893 + MER58A DNA MER1_type 4 199 -25 2008 92 3 44 chr6 117448596 117448910 -64966332 + AluSx SINE Alu 1 302 0 444 219 45 138 chr6 117448913 117449137 -64966105 + MER58 DNA MER1_type 13 2420 0 2140 124 0 34 chr6 117449209 117449532 -64965710 - AluSx SINE Alu 0 312 1 330 300 8 25 chr6 117449880 117450000 -64965242 + MLT1K LTR MaLR 454 571 -17 392 262 289 27 chr6 117450139 117450540 -64964702 + L3 LINE CR1 703 1208 -369 498 215 147 42 chr6 117450568 117450759 -64964483 - MIR SINE MIR -1 261 51 350 330 0 9 chr6 117450791 117450903 -64964339 + L3 LINE CR1 1249 1359 -218 2286 110 3 0 chr6 117451457 117451766 -64963476 - AluSx SINE Alu -2 310 1 1684 167 7 31 chr6 117451774 117452068 -64963174 - AluJb SINE Alu -25 287 1 2897 3 0 7 chr6 117452227 117452537 -64962705 + AluYa5 SINE Alu 1 308 -3 824 135 0 30 chr6 117452750 117452883 -64962359 + FLAM_C SINE Alu 1 129 -14 332 284 105 0 chr6 117452888 117452983 -64962259 - MIR SINE MIR -129 133 29 7073 53 14 0 chr6 117453072 117454225 -64961017 - L1PA7 LINE L1 -4 6150 4983 2377 76 3 0 chr6 117454789 117455080 -64960162 + AluSp SINE Alu 5 296 -17 25 90 0 0 chr6 117455562 117455629 -64959613 + AT_rich Low_complexity Low_complexity 1 67 0 229 269 157 19 chr6 117455652 117455760 -64959482 + MIR SINE MIR 16 138 -70 1934 106 99 3 chr6 117456037 117456320 -64958922 + AluSx SINE Alu 1 310 -2 1660 173 20 20 chr6 117456388 117456688 -64958554 + AluJo SINE Alu 1 300 -12 21 36 0 0 chr6 117456971 117456999 -64958243 + AT_rich Low_complexity Low_complexity 1 28 0 2596 66 0 0 chr6 117457063 117457368 -64957874 - AluY SINE Alu -6 305 1 500 161 0 0 chr6 117457962 117458049 -64957193 - AluSx SINE Alu 0 312 226 1125 151 0 0 chr6 117458050 117458209 -64957033 - AluSx SINE Alu -150 162 4 360 242 31 124 chr6 117458579 117458773 -64956469 - L1ME3A LINE L1 -50 6120 5945 2403 97 0 3 chr6 117459068 117459378 -64955864 - AluSc SINE Alu 0 309 1 2289 97 10 0 chr6 117460680 117460980 -64954262 - AluSx SINE Alu -9 303 1 254 258 145 24 chr6 117461964 117462088 -64953154 + MIR SINE MIR 76 214 -48 185 94 125 0 chr6 117462106 117462138 -64953104 + MIR SINE MIR 125 160 -102 540 111 0 0 chr6 117462388 117462469 -64952773 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr6 117462673 117462694 -64952548 + AT_rich Low_complexity Low_complexity 1 21 0 292 219 126 8 chr6 117462694 117462813 -64952429 - MER103 DNA DNA -31 135 3 415 267 76 43 chr6 117463383 117463593 -64951649 - MIR SINE MIR -26 236 20 2319 196 40 0 chr6 117463708 117464183 -64951059 + L1M4 LINE L1 3875 4368 -1778 2330 109 0 0 chr6 117464186 117464489 -64950753 - AluSx SINE Alu -9 303 1 822 282 157 33 chr6 117464587 117465161 -64950081 - L1MC4a LINE L1 -1904 5904 5260 35 54 0 0 chr6 117465354 117465410 -64949832 + AT_rich Low_complexity Low_complexity 1 56 0 180 176 0 0 chr6 117465424 117465458 -64949784 + CT-rich Low_complexity Low_complexity 4 37 0 669 181 23 8 chr6 117465522 117465655 -64949587 + MLT1J2 LTR MaLR 1 135 -315 1214 144 53 49 chr6 117465735 117465825 -64949417 - MER33 DNA MER1_type -2261 324 236 2240 118 3 0 chr6 117465825 117466129 -64949113 + AluSx SINE Alu 1 305 -7 1214 144 53 49 chr6 117466129 117466301 -64948941 - MER33 DNA MER1_type -2349 236 61 351 268 94 14 chr6 117466346 117466484 -64948758 + MLT1J2 LTR MaLR 281 429 -21 21 0 0 0 chr6 117466489 117466510 -64948732 + AT_rich Low_complexity Low_complexity 1 21 0 1482 120 0 23 chr6 117466664 117466906 -64948336 - AluSg/x SINE Alu 0 307 71 1645 126 4 42 chr6 117466993 117467256 -64947986 - AluJo SINE Alu -13 299 47 2247 194 65 46 chr6 117467343 117467955 -64947287 + MLT1E3 LTR MaLR 1 624 0 419 279 92 49 chr6 117467965 117468239 -64947003 - L1MC4a LINE L1 -1446 4700 4439 611 221 0 15 chr6 117468239 117468370 -64946872 + FLAM_A SINE Alu 4 132 -1 419 279 92 49 chr6 117468370 117468707 -64946535 - L1MC4a LINE L1 -1707 4439 4063 374 272 47 47 chr6 117468706 117468919 -64946323 - L1MC4a LINE L1 -2389 3757 3545 * 23 0 0 0 chr6 117469118 117469141 -64946101 + AT_rich Low_complexity Low_complexity 1 23 0 341 300 79 75 chr6 117469535 117470039 -64945203 - L1MC4a LINE L1 -3381 2765 2260 1471 292 45 41 chr6 117470608 117471142 -64944100 - MLT1G LTR MaLR -3 587 52 189 0 0 0 chr6 117471271 117471292 -64943950 + (A)n Simple_repeat Simple_repeat 1 21 0 203 340 103 0 chr6 117471851 117471948 -64943294 - MIR SINE MIR -86 176 70 2038 104 10 13 chr6 117472745 117473044 -64942198 + AluSx SINE Alu 1 298 -14 917 205 71 8 chr6 117473363 117473602 -64941640 - MER112 DNA MER1_type -1 255 2 758 233 66 35 chr6 117473756 117473984 -64941258 + MER102b DNA MER1_type 82 316 -25 571 188 11 6 chr6 117473994 117474175 -64941067 + GA-rich Low_complexity Low_complexity 1 182 0 639 269 131 40 chr6 117474313 117474762 -64940480 - L2 LINE L2 -17 3296 2807 314 270 0 50 chr6 117474849 117474949 -64940293 + MER5B DNA MER1_type 1 95 -83 1239 148 89 0 chr6 117475836 117476038 -64939204 + AluJo SINE Alu 1 220 -92 246 167 0 0 chr6 117476038 117476080 -64939162 + Alu SINE Alu 86 127 -175 302 241 116 14 chr6 117477670 117477823 -64937419 + MIR SINE MIR 20 184 -62 277 187 99 22 chr6 117478328 117478419 -64936823 - HAL1 LINE L1 -251 2256 2159 1040 161 0 0 chr6 117478429 117478591 -64936651 - FAM SINE Alu -12 163 2 25 31 0 0 chr6 117478596 117478628 -64936614 + AT_rich Low_complexity Low_complexity 1 32 0 1822 216 56 43 chr6 117478630 117478911 -64936331 - HAL1 LINE L1 -495 2012 1736 2281 87 26 19 chr6 117478911 117479222 -64936020 - AluSp SINE Alu 0 313 1 1822 216 56 43 chr6 117479222 117479496 -64935746 - HAL1 LINE L1 -771 1736 1450 304 306 179 10 chr6 117479620 117479921 -64935321 + L2 LINE L2 2962 3313 0 2375 91 0 0 chr6 117480633 117480929 -64934313 - AluY SINE Alu -15 296 1 1740 119 106 44 chr6 117481107 117481252 -64933990 + AluSx SINE Alu 1 136 -176 2404 81 3 0 chr6 117481252 117481547 -64933695 + AluY SINE Alu 1 296 -15 1740 119 106 44 chr6 117481547 117481694 -64933548 + AluSx SINE Alu 136 311 -1 309 51 0 0 chr6 117482112 117482151 -64933091 + (TG)n Simple_repeat Simple_repeat 1 39 0 191 286 130 0 chr6 117482908 117482985 -64932257 + L2 LINE L2 2584 2670 -644 185 257 55 46 chr6 117483224 117483333 -64931909 + L2 LINE L2 2941 3050 -222 4017 171 36 36 chr6 117484478 117485158 -64930084 + L1MB2 LINE L1 4581 5259 -912 1924 150 0 10 chr6 117485158 117485451 -64929791 + AluJb SINE Alu 1 290 -22 4017 171 36 36 chr6 117485451 117485813 -64929429 + L1MB2 LINE L1 5259 5619 -552 180 0 0 0 chr6 117485813 117485833 -64929409 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 4017 171 36 36 chr6 117485833 117486313 -64928929 + L1MB2 LINE L1 5619 6100 -71 527 162 0 99 chr6 117486313 117486370 -64928872 - L1M2 LINE L1 -5130 1719 1658 2249 109 3 0 chr6 117486370 117486664 -64928578 - AluSp SINE Alu -16 297 3 527 162 0 99 chr6 117486664 117486748 -64928494 - L1M2 LINE L1 -5191 1658 1592 277 125 0 56 chr6 117486765 117486777 -64928465 + L1MB4 LINE L1 6111 6122 -58 1033 212 5 14 chr6 117486777 117486989 -64928253 + MER6B DNA MER2_type 1 210 0 277 125 0 56 chr6 117486989 117487048 -64928194 + L1MB4 LINE L1 6122 6178 -2 13577 209 21 25 chr6 117487184 117487745 -64927497 + L1MA5 LINE L1 1300 1861 -4987 1880 184 0 10 chr6 117487745 117488050 -64927192 + AluJo SINE Alu 1 302 -10 13577 209 21 25 chr6 117488050 117489819 -64925423 + L1MA5 LINE L1 1861 3635 -3213 2179 132 3 0 chr6 117489819 117490130 -64925112 + AluSx SINE Alu 1 312 0 13577 209 21 25 chr6 117490130 117490511 -64924731 + L1MA5 LINE L1 3635 4016 -2832 2383 87 3 0 chr6 117490511 117490810 -64924432 + AluSp SINE Alu 1 300 -13 13577 209 21 25 chr6 117490810 117492619 -64922623 + L1MA5 LINE L1 4016 5860 -988 423 0 0 0 chr6 117492619 117492666 -64922576 + (CA)n Simple_repeat Simple_repeat 2 48 0 5051 139 36 24 chr6 117492666 117493644 -64921598 + L1MA5 LINE L1 6007 6996 -6 364 328 34 0 chr6 117493651 117493770 -64921472 - MIR3 SINE MIR -41 167 45 1851 166 3 16 chr6 117493787 117494101 -64921141 - AluJo SINE Alu -2 310 1 2330 91 0 3 chr6 117494193 117494490 -64920752 + AluSx SINE Alu 1 296 -16 303 253 241 37 chr6 117495101 117495263 -64919979 + L2 LINE L2 2194 2388 -926 1765 181 31 6 chr6 117495322 117495676 -64919566 + MLT1A1 LTR MaLR 3 365 0 2325 70 0 27 chr6 117495696 117495996 -64919246 - AluSc SINE Alu -17 292 1 3031 214 28 5 chr6 117496020 117496656 -64918586 - MER82 DNA MER2_type 0 653 3 221 288 50 38 chr6 117496709 117496789 -64918453 + L2 LINE L2 3230 3310 -3 263 273 42 125 chr6 117497879 117498004 -64917238 + L2 LINE L2 3075 3176 -96 653 82 31 0 chr6 117498004 117498102 -64917140 + L1MB3 LINE L1 6072 6172 -11 263 273 42 125 chr6 117498102 117498192 -64917050 + L2 LINE L2 3176 3272 0 822 219 9 42 chr6 117498251 117498466 -64916776 - MER3 DNA MER1_type -1 208 1 902 163 119 40 chr6 117498476 117498617 -64916625 - MER58A DNA MER1_type -2199 221 58 2044 153 34 6 chr6 117498617 117498971 -64916271 + MLT1A1 LTR MaLR 1 364 -1 902 163 119 40 chr6 117498971 117499031 -64916211 - MER58A DNA MER1_type -2362 58 4 2517 76 0 0 chr6 117499285 117499608 -64915634 + AluY SINE Alu 1 323 0 2247 108 3 0 chr6 117499879 117500174 -64915068 + AluSx SINE Alu 1 296 -16 1555 124 145 0 chr6 117500449 117500698 -64914544 + AluSx SINE Alu 1 285 -17 671 128 137 0 chr6 117500756 117500873 -64914369 - FLAM_C SINE Alu 0 133 1 285 298 32 16 chr6 117501906 117502030 -64913212 + L2 LINE L2 2980 3105 -167 423 348 62 0 chr6 117502147 117502325 -64912917 - MIR3 SINE MIR -6 202 14 310 319 51 57 chr6 117502937 117503094 -64912148 - L2 LINE L2 -37 3235 3080 224 177 0 81 chr6 117503404 117503466 -64911776 + L2 LINE L2 3240 3296 -17 21 0 0 0 chr6 117504413 117504434 -64910808 + AT_rich Low_complexity Low_complexity 1 21 0 2584 65 0 0 chr6 117504686 117504995 -64910247 - AluY SINE Alu -2 309 1 2273 88 0 53 chr6 117505046 117505366 -64909876 + AluSq SINE Alu 1 303 -10 2711 270 55 39 chr6 117505676 117506531 -64908711 + L1MEc LINE L1 258 1098 -5509 2584 53 0 0 chr6 117506531 117506835 -64908407 - AluY SINE Alu -7 304 1 2711 270 55 39 chr6 117506835 117506909 -64908333 + L1MEc LINE L1 1098 1169 -5438 1987 146 9 25 chr6 117506909 117507225 -64908017 + AluSx SINE Alu 1 311 -1 2711 270 55 39 chr6 117507225 117507706 -64907536 + L1MEc LINE L1 1169 1692 -4915 2462 109 3 8 chr6 117507719 117508085 -64907157 + L1PA16 LINE L1 5794 6157 -9 2596 104 3 6 chr6 117508224 117508588 -64906654 - THE1B LTR MaLR -1 363 1 11583 89 7 27 chr6 117508588 117510201 -64905041 - THE1B-int LTR MaLR 0 1580 1 2664 95 14 0 chr6 117510201 117510560 -64904682 - THE1B LTR MaLR 0 364 1 466 237 52 28 chr6 117510838 117511070 -64904172 + L1MEc LINE L1 1693 1974 -4512 1065 160 0 48 chr6 117511076 117511282 -64903960 - MER20 DNA MER1_type -1 218 23 260 262 117 10 chr6 117511547 117511650 -64903592 - HAL1b LINE L1 -7 1341 1228 2202 115 18 92 chr6 117511764 117512199 -64903043 - MER57A LTR ERV1 0 403 1 422 278 50 33 chr6 117512206 117512386 -64902856 - L1ME LINE L1 -301 5820 5638 284 156 0 0 chr6 117512386 117512431 -64902811 + Alu SINE Alu 1 45 -256 1905 123 0 0 chr6 117512431 117512692 -64902550 - AluSx SINE Alu -51 261 1 188 86 29 0 chr6 117515011 117515046 -64900196 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 266 283 0 0 chr6 117515252 117515312 -64899930 + L2 LINE L2 3247 3306 -7 343 250 71 18 chr6 117515499 117515611 -64899631 - MIR SINE MIR -50 212 95 394 207 60 9 chr6 117516188 117516304 -64898938 + LTR43 LTR ERV1 189 310 -292 196 195 195 0 chr6 117518520 117518561 -64896681 - L2 LINE L2 -19 3294 3246 22 94 0 0 chr6 117518614 117518678 -64896564 + AT_rich Low_complexity Low_complexity 1 64 0 2622 61 0 0 chr6 117518864 117519191 -64896051 + L1PA5 LINE L1 5821 6147 -7 26 0 0 0 chr6 117519195 117519221 -64896021 + AT_rich Low_complexity Low_complexity 1 26 0 2022 138 8 59 chr6 117519314 117519669 -64895573 - MER1B DNA MER1_type 0 337 1 306 250 54 0 chr6 117519702 117519794 -64895448 + L1MEc LINE L1 2377 2473 -3955 1848 125 45 0 chr6 117520136 117520391 -64894851 + AluSx SINE Alu 16 285 -27 243 0 0 0 chr6 117520391 117520418 -64894824 + (CAAT)n Simple_repeat Simple_repeat 1 27 0 1257 245 72 28 chr6 117520653 117521183 -64894059 - L1M4 LINE L1 -2168 3978 3426 4462 150 33 27 chr6 117521277 117522278 -64892964 - L1MB8 LINE L1 -1 6177 5172 1213 204 58 37 chr6 117522279 117522360 -64892882 - L1M4 LINE L1 -2802 3344 3266 2393 109 0 0 chr6 117522360 117522671 -64892571 - AluSx SINE Alu -1 311 1 1213 204 58 37 chr6 117522671 117523051 -64892191 - L1M4 LINE L1 -2880 3266 2873 889 256 47 3 chr6 117523053 117523374 -64891868 - L1M4 LINE L1 -3313 2833 2499 351 0 0 0 chr6 117523386 117523425 -64891817 + (TA)n Simple_repeat Simple_repeat 1 39 0 2337 87 3 7 chr6 117523429 117523729 -64891513 - AluSp SINE Alu -14 299 1 277 144 0 7 chr6 117524510 117524574 -64890668 + Alu SINE Alu 2 39 -262 1905 108 0 0 chr6 117524574 117524815 -64890427 - AluSg SINE Alu -69 241 1 1889 159 3 7 chr6 117526118 117526407 -64888835 - AluJo SINE Alu -24 288 1 350 138 21 128 chr6 117526895 117526948 -64888294 - MSTD LTR MaLR -312 84 44 2053 131 7 10 chr6 117526948 117527246 -64887996 - AluSx SINE Alu -15 297 1 350 138 21 128 chr6 117527246 117527286 -64887956 - MSTD LTR MaLR -352 44 1 1865 127 19 51 chr6 117527326 117527642 -64887600 + AluJo SINE Alu 2 307 -5 29 0 0 0 chr6 117527787 117527816 -64887426 + AT_rich Low_complexity Low_complexity 1 29 0 2967 182 18 55 chr6 117528480 117529101 -64886141 + MER77 LTR ERV1 4 601 -4 2340 80 0 20 chr6 117529518 117529820 -64885422 + AluSq SINE Alu 1 296 -17 21 82 0 0 chr6 117530063 117530112 -64885130 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr6 117530642 117530665 -64884577 + (CAA)n Simple_repeat Simple_repeat 2 24 0 491 206 29 82 chr6 117531764 117531815 -64883427 + MER112 DNA MER1_type 95 147 -113 2058 137 0 10 chr6 117531815 117532121 -64883121 - AluSx SINE Alu -9 303 1 491 206 29 82 chr6 117532121 117532167 -64883075 + MER112 DNA MER1_type 147 194 -66 2163 115 3 7 chr6 117532167 117532472 -64882770 + AluSx SINE Alu 1 304 -8 491 206 29 82 chr6 117532472 117532543 -64882699 + MER112 DNA MER1_type 194 255 -5 195 42 0 0 chr6 117533355 117533379 -64881863 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1894 125 29 7 chr6 117533383 117533662 -64881580 - AluSx SINE Alu -27 285 1 21 0 0 0 chr6 117534326 117534347 -64880895 + AT_rich Low_complexity Low_complexity 1 21 0 2214 109 3 3 chr6 117534379 117534683 -64880559 + AluSx SINE Alu 1 304 -8 743 264 52 52 chr6 117535664 117535914 -64879328 - MIR SINE MIR -10 252 3 2287 92 7 0 chr6 117535968 117536260 -64878982 - AluSc SINE Alu -13 296 3 22 35 0 0 chr6 117536264 117536293 -64878949 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 117537217 117537245 -64877997 + AT_rich Low_complexity Low_complexity 1 28 0 239 288 55 119 chr6 117538449 117538685 -64876557 - L2 LINE L2 -19 3294 3074 233 154 39 0 chr6 117538815 117538867 -64876375 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 22 35 0 0 chr6 117539436 117539465 -64875777 + AT_rich Low_complexity Low_complexity 1 29 0 201 74 0 0 chr6 117539468 117539495 -64875747 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 930 128 0 0 chr6 117541453 117541586 -64873656 + FLAM_C SINE Alu 1 133 0 4234 159 73 16 chr6 117542093 117542563 -64872679 + L1MD2 LINE L1 5268 5804 -555 2132 126 0 3 chr6 117542563 117542856 -64872386 - AluSx SINE Alu -20 292 1 4234 159 73 16 chr6 117542856 117543188 -64872054 + L1MD2 LINE L1 5804 6116 -243 256 362 28 17 chr6 117543249 117543426 -64871816 + L2 LINE L2 2696 2874 -440 22 35 0 0 chr6 117545457 117545486 -64869756 + AT_rich Low_complexity Low_complexity 1 29 0 1017 187 108 5 chr6 117546306 117546520 -64868722 - MER46A DNA MER2_type 0 236 1 34 0 0 0 chr6 117547437 117547471 -64867771 + AT_rich Low_complexity Low_complexity 1 34 0 1835 191 0 13 chr6 117547516 117547830 -64867412 + AluJo SINE Alu 1 310 -2 2079 131 10 6 chr6 117547923 117548235 -64867007 - AluSq SINE Alu 0 313 1 435 38 0 0 chr6 117548381 117548434 -64866808 + (CA)n Simple_repeat Simple_repeat 2 54 0 507 157 157 17 chr6 117548464 117548579 -64866663 + L1MC2 LINE L1 6199 6329 -15 2366 84 0 7 chr6 117548579 117548887 -64866355 + AluSq SINE Alu 1 306 -7 1482 259 139 12 chr6 117548921 117549703 -64865539 + L1M4c LINE L1 1205 2243 -4320 325 261 42 0 chr6 117549716 117549835 -64865407 - L1M4 LINE L1 -1407 4739 4616 813 253 68 29 chr6 117550030 117550378 -64864864 - L1MEc LINE L1 -4579 1731 1398 1732 95 0 0 chr6 117550378 117550599 -64864643 - AluSg/x SINE Alu -8 304 84 813 253 68 29 chr6 117550599 117550753 -64864489 - L1MEc LINE L1 -4912 1398 1062 10451 25 0 0 chr6 117550948 117552956 -64862286 + L1PA3 LINE L1 4159 6167 0 27 0 0 0 chr6 117553786 117553813 -64861429 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr6 117554561 117554585 -64860657 + AT_rich Low_complexity Low_complexity 1 24 0 194 435 11 0 chr6 117555485 117555577 -64859665 - MIR SINE MIR -62 146 54 630 128 0 0 chr6 117558056 117558173 -64857069 + (GA)n Simple_repeat Simple_repeat 1 117 0 22 35 0 0 chr6 117558428 117558457 -64856785 + AT_rich Low_complexity Low_complexity 1 29 0 2831 72 20 35 chr6 117558457 117558859 -64856383 - L1PA8A LINE L1 -2 6129 5734 30 27 0 0 chr6 117559407 117559444 -64855798 + AT_rich Low_complexity Low_complexity 1 37 0 303 321 84 42 chr6 117559551 117559581 -64855661 + L1ME LINE L1 4903 4930 -1216 1771 132 8 4 chr6 117559581 117559846 -64855396 + AluSg SINE Alu 33 298 -12 303 321 84 42 chr6 117559846 117559932 -64855310 + L1ME LINE L1 4930 5011 -1135 2296 72 0 0 chr6 117559932 117560211 -64855031 + AluY SINE Alu 1 279 -32 180 0 0 0 chr6 117560211 117560231 -64855011 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 303 321 84 42 chr6 117560231 117560366 -64854876 + L1ME LINE L1 5011 5139 -1007 2239 92 7 0 chr6 117560366 117560661 -64854581 + AluSg SINE Alu 1 297 -13 303 321 84 42 chr6 117560661 117560811 -64854431 + L1ME LINE L1 5139 5324 -822 1072 96 0 0 chr6 117560815 117560978 -64854264 + AluSg/x SINE Alu 147 309 0 226 280 40 40 chr6 117561015 117561090 -64854152 + MIR SINE MIR 18 92 -170 2824 146 3 51 chr6 117561104 117561132 -64854110 + Tigger7 DNA MER2_type 65 93 -615 1523 178 17 45 chr6 117561132 117561274 -64853968 + AluSx SINE Alu 3 134 -178 2250 103 0 34 chr6 117561274 117561595 -64853647 + AluSx SINE Alu 1 310 -2 1523 178 17 45 chr6 117561595 117561744 -64853498 + AluSx SINE Alu 134 286 -26 2824 146 3 51 chr6 117561744 117562183 -64853059 + Tigger7 DNA MER2_type 93 510 -198 578 154 29 58 chr6 117562176 117562280 -64852962 + Tigger7 DNA MER2_type 2391 2491 0 * 601 247 52 10 chr6 117562425 117562619 -64852623 + L1ME LINE L1 5526 5727 -394 1511 236 126 17 chr6 117562626 117563386 -64851856 + L2 LINE L2 2463 3313 0 2156 118 0 0 chr6 117563462 117563759 -64851483 + AluSg SINE Alu 1 297 -13 1837 134 18 14 chr6 117564009 117564361 -64850881 + AluSx SINE Alu 1 353 0 399 298 107 0 chr6 117564363 117564484 -64850758 + MIR SINE MIR 26 159 -103 18243 40 1 0 chr6 117564484 117567505 -64847737 - L1PA5 LINE L1 0 6154 3132 1875 141 9 54 chr6 117567538 117567872 -64847370 + MER1B DNA MER1_type 1 319 -20 348 292 10 0 chr6 117567879 117567975 -64847267 + MIR SINE MIR 166 262 0 836 258 100 47 chr6 117568073 117568694 -64846548 + L1ME3A LINE L1 5254 5907 -263 281 125 4 20 chr6 117568711 117568767 -64846475 - FLAM SINE Alu -4 129 82 668 328 82 58 chr6 117568808 117569463 -64845779 - L1MEd LINE L1 -5443 676 6 1291 256 29 3 chr6 117570005 117570352 -64844890 + L1MC4 LINE L1 7160 7515 -527 21 36 0 0 chr6 117570370 117570398 -64844844 + AT_rich Low_complexity Low_complexity 1 28 0 2093 147 72 68 chr6 117570460 117570915 -64844327 + L1MB2 LINE L1 5627 6083 -88 1134 250 57 103 chr6 117571128 117571692 -64843550 + HAL1 LINE L1 8 545 -1962 2411 73 0 3 chr6 117571843 117572145 -64843097 - AluSx SINE Alu -11 301 1 281 250 28 14 chr6 117572145 117572217 -64843025 + HAL1 LINE L1 797 869 -1638 754 370 72 23 chr6 117572331 117572971 -64842271 - L2 LINE L2 -429 2885 2215 2236 85 3 28 chr6 117573134 117573452 -64841790 + AluSg SINE Alu 1 310 0 2347 68 0 0 chr6 117573869 117574176 -64841066 - AluSc SINE Alu 0 307 1 24 0 0 0 chr6 117574220 117574244 -64840998 + AT_rich Low_complexity Low_complexity 1 24 0 276 30 0 0 chr6 117575328 117575361 -64839881 + (CAAT)n Simple_repeat Simple_repeat 3 35 0 538 202 58 0 chr6 117575361 117575465 -64839777 - FLAM_A SINE Alu -29 113 4 276 30 0 0 chr6 117575536 117575569 -64839673 + (TA)n Simple_repeat Simple_repeat 2 34 0 301 278 9 56 chr6 117576183 117576291 -64838951 - L2 LINE L2 -172 3100 2998 724 253 99 6 chr6 117576456 117576638 -64838604 - MIR SINE MIR -62 200 2 191 310 159 25 chr6 117576742 117576971 -64838271 - L2 LINE L2 -479 2835 2571 2120 125 0 23 chr6 117576971 117577275 -64837967 - AluSx SINE Alu -15 297 1 776 215 117 31 chr6 117577511 117577734 -64837508 - MIR SINE MIR 0 262 21 22 0 0 0 chr6 117577828 117577850 -64837392 + AT_rich Low_complexity Low_complexity 1 22 0 251 212 0 45 chr6 117577853 117577919 -64837323 - L2 LINE L2 -1067 2247 2185 532 310 11 48 chr6 117577932 117578119 -64837123 + MER5A DNA MER1_type 10 189 0 2133 110 0 20 chr6 117578241 117578541 -64836701 - AluSg SINE Alu -16 294 1 228 250 0 0 chr6 117578553 117578609 -64836633 - HsTC2 DNA Tc2 -5 1893 1838 191 130 0 22 chr6 117578835 117578881 -64836361 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 383 311 19 0 chr6 117578889 117578995 -64836247 + L1MEd LINE L1 543 650 -5469 456 19 0 0 chr6 117580103 117580156 -64835086 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 36 0 0 chr6 117580394 117580422 -64834820 + AT_rich Low_complexity Low_complexity 1 28 0 597 246 214 5 chr6 117580828 117581043 -64834199 + MIR SINE MIR 3 262 0 348 327 224 15 chr6 117581467 117581923 -64833319 + L2 LINE L2 2303 2853 -461 214 396 101 44 chr6 117581972 117582199 -64833043 + L2 LINE L2 2993 3232 -40 2115 102 0 4 chr6 117582738 117583013 -64832229 + AluSx SINE Alu 14 287 -25 221 338 54 0 chr6 117583392 117583466 -64831776 - L2 LINE L2 -20 3252 3175 363 170 113 57 chr6 117583927 117584068 -64831174 - L1ME4a LINE L1 -5 6116 5968 285 254 88 26 chr6 117584202 117584316 -64830926 - L1ME4a LINE L1 -431 5690 5570 2135 104 7 0 chr6 117584586 117584873 -64830369 + AluSp SINE Alu 1 289 -24 644 60 30 0 chr6 117584874 117584974 -64830268 + (CATAA)n Simple_repeat Simple_repeat 3 105 0 324 287 89 74 chr6 117585194 117585396 -64829846 - MIR SINE MIR -50 212 8 2497 136 37 65 chr6 117586063 117586598 -64828644 - L1MA6 LINE L1 0 6300 5781 2936 139 12 16 chr6 117586607 117587123 -64828119 + L1MA6 LINE L1 5255 5768 -523 472 191 154 0 chr6 117587351 117587487 -64827755 + MER104 DNA Tc2 18 174 -6 20694 79 9 1 chr6 117587843 117591510 -64823732 + L1PA7 LINE L1 2442 6143 -11 448 191 92 14 chr6 117591661 117591802 -64823440 + MER103 DNA DNA 1 152 -14 283 116 0 0 chr6 117592271 117592314 -64822928 + U5 snRNA snRNA 1 43 -73 1741 121 103 11 chr6 117592547 117592828 -64822414 + AluSq SINE Alu 1 307 -6 2162 126 0 0 chr6 117593101 117593403 -64821839 - AluSx SINE Alu -10 302 1 1940 138 0 37 chr6 117594116 117594413 -64820829 - AluSx SINE Alu -24 288 3 356 323 103 7 chr6 117594631 117594786 -64820456 + L1ME3A LINE L1 4083 4252 -1894 3461 123 15 19 chr6 117594789 117595317 -64819925 - MER1A DNA MER1_type 0 527 2 364 313 71 28 chr6 117595468 117595903 -64819339 + L1ME3A LINE L1 4733 5186 -960 792 264 85 72 chr6 117595945 117596177 -64819065 + L1ME3A LINE L1 5255 5483 -687 1678 168 10 28 chr6 117596177 117596502 -64818740 + AluJb SINE Alu 3 322 0 792 264 85 72 chr6 117596502 117596930 -64818312 + L1ME3A LINE L1 5483 5881 -289 1281 204 59 12 chr6 117598363 117598702 -64816540 + L1MC2 LINE L1 4942 5296 -850 852 191 19 0 chr6 117598702 117598859 -64816383 + FRAM SINE Alu 1 159 -17 2930 156 60 32 chr6 117598860 117599143 -64816099 + L1MC2 LINE L1 5286 5560 -784 2518 55 3 0 chr6 117599143 117599451 -64815791 + AluY SINE Alu 1 309 -2 2930 156 60 32 chr6 117599451 117599784 -64815458 + L1MC2 LINE L1 5560 5919 -425 2174 129 0 0 chr6 117599935 117600237 -64815005 - AluSx SINE Alu -10 302 1 2328 110 7 0 chr6 117600359 117600669 -64814573 - AluSx SINE Alu 0 312 1 337 329 90 105 chr6 117600822 117601156 -64814086 - L2 LINE L2 -1 3271 2943 * 2331 234 144 78 chr6 117601155 117601218 -64814024 + L2 LINE L2 1782 1839 -1474 2238 68 7 4 chr6 117601218 117601535 -64813707 + AluSq SINE Alu 5 322 0 2331 234 144 78 chr6 117601535 117602269 -64812973 + L2 LINE L2 1839 2523 -790 1325 139 26 171 chr6 117602269 117602614 -64812628 + AluJb SINE Alu 1 295 -7 1989 133 7 0 chr6 117602616 117602894 -64812348 + AluSq SINE Alu 1 280 -33 2331 234 144 78 chr6 117602894 117603525 -64811717 + L2 LINE L2 2523 3310 -3 851 354 144 14 chr6 117603584 117604285 -64810957 - L2 LINE L2 -460 2854 2063 230 319 211 42 chr6 117604567 117604780 -64810462 + L2 LINE L2 2972 3220 -52 21 0 0 0 chr6 117607741 117607762 -64807480 + AT_rich Low_complexity Low_complexity 1 21 0 564 263 171 24 chr6 117608673 117608878 -64806364 + MIR SINE MIR 8 242 -20 228 268 127 0 chr6 117609250 117609321 -64805921 - L2 LINE L2 -3 3269 3190 463 308 52 38 chr6 117609379 117609590 -64805652 - L2 LINE L2 -243 3070 2857 1449 149 76 11 chr6 117609648 117609906 -64805336 - MER7A DNA MER2_type -2 344 72 422 145 0 29 chr6 117609906 117609975 -64805267 + Tigger2 DNA MER2_type 1 67 -2651 1719 160 3 28 chr6 117609987 117610295 -64804947 + AluJo SINE Alu 1 301 0 2821 131 21 2 chr6 117610295 117610724 -64804518 + Tigger2 DNA MER2_type 2282 2718 0 247 296 42 14 chr6 117610724 117610795 -64804447 - MER7A DNA MER2_type -275 73 1 723 270 16 16 chr6 117610799 117610984 -64804258 + MIR SINE MIR 74 258 -4 1038 312 64 22 chr6 117611002 117611499 -64803743 - L2 LINE L2 -493 2821 2304 280 353 136 5 chr6 117611577 117611761 -64803481 + L2 LINE L2 2648 2855 -459 967 283 140 8 chr6 117612700 117613100 -64802142 - MLT1L LTR MaLR -59 556 104 2171 89 4 0 chr6 117613901 117614210 -64801032 - AluSg SINE Alu 0 310 1 2114 107 28 3 chr6 117614695 117614985 -64800257 - AluSx SINE Alu -15 297 1 252 0 0 0 chr6 117615518 117615546 -64799696 + (TG)n Simple_repeat Simple_repeat 1 28 0 2175 93 0 0 chr6 117615546 117615824 -64799418 - AluY SINE Alu -33 278 1 21 71 0 0 chr6 117616343 117616385 -64798857 + AT_rich Low_complexity Low_complexity 1 42 0 1929 106 29 0 chr6 117616465 117616783 -64798459 - AluSq SINE Alu 0 326 1 262 341 85 0 chr6 117617830 117617959 -64797283 + MIR SINE MIR 73 212 -50 480 246 113 0 chr6 117617996 117618138 -64797104 + MIR SINE MIR 105 262 0 509 216 72 24 chr6 117618546 117618671 -64796571 + MIR SINE MIR 1 131 -131 316 287 37 37 chr6 117618890 117619026 -64796216 + Tigger8 DNA MER2_type 529 664 -2 695 263 31 27 chr6 117619504 117619659 -64795583 - MIR SINE MIR -29 233 75 1601 128 79 57 chr6 117619659 117619696 -64795546 - MER46B DNA MER2_type -2495 236 201 1554 182 57 0 chr6 117619696 117619976 -64795266 + AluJo SINE Alu 1 296 -16 1601 128 79 57 chr6 117619976 117620291 -64794951 - MER46B DNA MER2_type -2530 201 1 695 263 31 27 chr6 117620291 117620359 -64794883 - MIR SINE MIR -187 75 9 1293 204 0 0 chr6 117622666 117622887 -64792355 - AluJo SINE Alu -16 296 76 236 322 0 0 chr6 117623006 117623093 -64792149 + L1ME4a LINE L1 5964 6050 -71 240 237 68 0 chr6 117623157 117623216 -64792026 - MIR SINE MIR -3 259 197 231 257 162 0 chr6 117623607 117623681 -64791561 - MIR SINE MIR -73 189 104 2083 162 9 0 chr6 117623870 117624215 -64791027 + MER7A DNA MER2_type 1 346 0 1782 282 75 22 chr6 117625233 117625783 -64789459 - MLT1E LTR MaLR 0 593 15 26 50 0 0 chr6 117626707 117626747 -64788495 + AT_rich Low_complexity Low_complexity 1 40 0 1751 153 108 0 chr6 117626781 117627095 -64788147 - MER7A DNA MER2_type 0 346 1 453 273 25 8 chr6 117627713 117627834 -64787408 - L2 LINE L2 -2 3311 3189 586 221 43 21 chr6 117627883 117628023 -64787219 - MIR SINE MIR -118 144 2 451 250 95 0 chr6 117629518 117629634 -64785608 + MIR SINE MIR 23 149 -113 642 251 119 4 chr6 117629740 117629967 -64785275 + L2 LINE L2 3061 3313 0 520 214 0 10 chr6 117630148 117630246 -64784996 + MER5A DNA MER1_type 9 105 -84 243 378 9 0 chr6 117630291 117630402 -64784840 - L2 LINE L2 -511 2803 2692 680 284 163 8 chr6 117630611 117630868 -64784374 - MER115 DNA AcHobo -355 338 42 249 325 73 16 chr6 117630999 117631122 -64784120 - L2 LINE L2 -626 2688 2559 1656 171 0 52 chr6 117631204 117631514 -64783728 + AluJo SINE Alu 1 294 -18 613 273 46 5 chr6 117631524 117631740 -64783502 - HAL1 LINE L1 -833 1674 1450 523 256 123 0 chr6 117631801 117631996 -64783246 - L1MC4 LINE L1 -17 8025 7807 2355 93 0 3 chr6 117632040 117632340 -64782902 + AluSq SINE Alu 1 299 -14 319 275 71 24 chr6 117632616 117632798 -64782444 - HAL1 LINE L1 -1378 1129 934 1408 272 126 11 chr6 117632798 117633265 -64781977 - LTR33 LTR ERVL 0 521 1 319 275 71 24 chr6 117633265 117633293 -64781949 - HAL1 LINE L1 -1573 934 909 22 0 0 0 chr6 117634472 117634494 -64780748 + AT_rich Low_complexity Low_complexity 1 22 0 42 65 0 0 chr6 117635227 117635304 -64779938 + AT_rich Low_complexity Low_complexity 1 77 0 201 241 0 0 chr6 117636320 117636374 -64778868 + CT-rich Low_complexity Low_complexity 1 54 0 599 148 17 0 chr6 117636392 117636507 -64778735 + C-rich Low_complexity Low_complexity 4 120 0 195 146 0 0 chr6 117637128 117637169 -64778073 + (T)n Simple_repeat Simple_repeat 1 41 0 1703 150 86 6 chr6 117638092 117638406 -64776836 + MER44D DNA MER2_type 1 609 0 243 95 95 0 chr6 117638534 117638576 -64776666 + MER94 DNA DNA 10 55 -79 266 316 106 23 chr6 117638622 117638871 -64776371 + L2 LINE L2 2794 3050 -263 1038 147 0 13 chr6 117638873 117639030 -64776212 + AluJb SINE Alu 137 291 -21 289 279 90 33 chr6 117639126 117639248 -64775994 + L2 LINE L2 3184 3312 -1 1929 161 0 0 chr6 117639248 117639539 -64775703 - AluSx SINE Alu -20 292 2 22 0 0 0 chr6 117639682 117639704 -64775538 + AT_rich Low_complexity Low_complexity 1 22 0 219 69 0 0 chr6 117640920 117640949 -64774293 + (TG)n Simple_repeat Simple_repeat 2 30 0 758 114 9 0 chr6 117641447 117641552 -64773690 + U6 snRNA snRNA 1 106 -1 195 42 0 0 chr6 117641944 117641968 -64773274 + (TG)n Simple_repeat Simple_repeat 1 24 0 1594 136 8 4 chr6 117642522 117642764 -64772478 - MER7A DNA MER2_type 0 336 94 1413 135 5 0 chr6 117642764 117642964 -64772278 + AluJb SINE Alu 87 287 -25 189 0 0 0 chr6 117642965 117642986 -64772256 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 512 162 34 77 chr6 117642986 117643103 -64772139 - MER7A DNA MER2_type -236 110 1 266 271 184 18 chr6 117643545 117643753 -64771489 - MLT1J LTR MaLR 0 511 352 1857 181 86 115 chr6 117643770 117644318 -64770924 - MLT1F LTR MaLR -10 532 1 248 219 125 0 chr6 117644373 117644437 -64770805 - MLT1J LTR MaLR -331 180 109 1824 177 10 0 chr6 117644636 117644935 -64770307 - AluJo SINE Alu -8 304 3 2279 107 0 7 chr6 117645371 117645681 -64769561 - AluSg1 SINE Alu -1 308 1 371 237 140 42 chr6 117646127 117646363 -64768879 + L1ME LINE L1 5067 5325 -821 279 291 13 0 chr6 117646485 117646564 -64768678 + L1ME LINE L1 5481 5560 -561 421 254 96 19 chr6 117646689 117646898 -64768344 - HAL1b LINE L1 -435 913 689 23 0 0 0 chr6 117647016 117647039 -64768203 + AT_rich Low_complexity Low_complexity 1 23 0 306 274 73 96 chr6 117647367 117647683 -64767559 + L2 LINE L2 2737 3043 -229 466 290 58 13 chr6 117647710 117647865 -64767377 + MIR SINE MIR 31 192 -70 246 62 0 0 chr6 117647983 117648015 -64767227 + (CA)n Simple_repeat Simple_repeat 1 32 0 337 314 101 47 chr6 117648067 117648236 -64767006 + L2 LINE L2 3088 3265 -7 316 250 0 56 chr6 117648580 117648688 -64766554 + L1ME4a LINE L1 5956 6057 -64 415 320 8 8 chr6 117648804 117648929 -64766313 - L2 LINE L2 0 3313 3189 341 43 0 0 chr6 117648984 117649030 -64766212 - MADE1 DNA Mariner -34 46 1 956 185 145 108 chr6 117649045 117649397 -64765845 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr6 117649752 117649782 -64765460 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr6 117650558 117650593 -64764649 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 117650656 117650684 -64764558 + AT_rich Low_complexity Low_complexity 1 28 0 221 226 36 0 chr6 117651283 117651367 -64763875 + (TA)n Simple_repeat Simple_repeat 1 87 0 3168 110 32 11 chr6 117651388 117651917 -64763325 - L1MA5A LINE L1 0 6297 5758 196 339 157 33 chr6 117651998 117652119 -64763123 - L2 LINE L2 0 3272 3137 7593 19 6 339 chr6 117652944 117654939 -64760303 - SVA Other Other 0 1386 57 189 0 0 0 chr6 117654939 117654960 -64760282 + (GGGAGA)n Simple_repeat Simple_repeat 1 21 0 574 333 97 56 chr6 117655167 117656025 -64759217 - L2 LINE L2 0 3272 2357 2302 95 3 0 chr6 117656025 117656319 -64758923 - AluSp SINE Alu -18 295 1 574 333 97 56 chr6 117656319 117656449 -64758793 - L2 LINE L2 -915 2357 2234 8620 223 50 34 chr6 117656491 117656719 -64758523 - L1M4 LINE L1 -1083 5063 4840 1690 188 10 0 chr6 117656719 117657028 -64758214 - AluJo SINE Alu 0 312 1 8620 223 50 34 chr6 117657028 117657651 -64757591 - L1M4 LINE L1 -1306 4840 4228 201 39 0 0 chr6 117657651 117657677 -64757565 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8620 223 50 34 chr6 117657677 117659529 -64755713 - L1M4 LINE L1 -1918 4228 2318 36 0 0 0 chr6 117659717 117659753 -64755489 + AT_rich Low_complexity Low_complexity 1 36 0 1555 174 35 38 chr6 117659754 117660042 -64755200 - AluJo SINE Alu -25 287 1 2415 65 7 0 chr6 117660109 117660403 -64754839 + AluY SINE Alu 1 296 -15 196 143 0 41 chr6 117661879 117661928 -64753314 + (TTCTCC)n Simple_repeat Simple_repeat 3 49 0 672 208 33 7 chr6 117661928 117662228 -64753014 + CT-rich Low_complexity Low_complexity 1 308 0 21 0 0 0 chr6 117662358 117662379 -64752863 + AT_rich Low_complexity Low_complexity 1 21 0 1953 130 7 27 chr6 117662549 117662850 -64752392 - AluSx SINE Alu -17 295 1 203 241 35 35 chr6 117663417 117663475 -64751767 + MIR3 SINE MIR 112 169 -39 1653 138 54 25 chr6 117665159 117665435 -64749807 + AluJo SINE Alu 6 289 -23 200 300 20 0 chr6 117665773 117665823 -64749419 + L2 LINE L2 3262 3312 -1 1649 261 71 9 chr6 117666078 117666545 -64748697 - MLT1J LTR MaLR 0 511 16 315 303 169 0 chr6 117666955 117667097 -64748145 - MIR SINE MIR -4 258 93 255 344 92 0 chr6 117667328 117667459 -64747783 - MIR SINE MIR -43 219 77 22 35 0 0 chr6 117667708 117667737 -64747505 + AT_rich Low_complexity Low_complexity 1 29 0 2220 96 0 4 chr6 117668443 117668724 -64746518 - AluSg SINE Alu -30 280 1 1860 89 0 8 chr6 117668782 117669018 -64746224 - AluSp SINE Alu -24 289 56 1206 85 129 5 chr6 117669043 117669244 -64745998 + Tigger4(Zombi) DNA MER2_type 2506 2731 0 429 325 93 35 chr6 117669329 117669674 -64745568 - L2 LINE L2 -63 3209 2845 311 271 224 27 chr6 117670126 117670291 -64744951 + MIR SINE MIR 7 202 -60 1629 181 21 3 chr6 117671229 117671516 -64743726 + AluJo SINE Alu 1 292 -20 1238 195 59 31 chr6 117672865 117673290 -64741952 + L1ME LINE L1 5015 5452 -712 909 202 15 40 chr6 117673293 117673491 -64741751 - MER20 DNA MER1_type -26 193 1 2439 80 0 13 chr6 117673558 117673870 -64741372 - AluSx SINE Alu -4 308 1 887 173 0 0 chr6 117673878 117674017 -64741225 - AluSg/x SINE Alu -17 293 155 1685 48 9 39 chr6 117674123 117674352 -64740890 + AluSc SINE Alu 68 289 -20 381 183 100 21 chr6 117674352 117674453 -64740789 + L1ME LINE L1 5595 5698 -480 931 294 140 44 chr6 117674548 117675947 -64739295 - L1MEd LINE L1 -4641 1669 86 1623 185 176 3 chr6 117675953 117676305 -64738937 + MER47B DNA MER2_type 6 418 0 559 200 117 72 chr6 117677991 117678145 -64737097 + MIR SINE MIR 45 210 -52 2150 76 56 30 chr6 117678145 117678447 -64736795 + AluY SINE Alu 1 310 -1 559 200 117 72 chr6 117678447 117678472 -64736770 + MIR SINE MIR 210 232 -30 297 163 0 0 chr6 117678807 117678856 -64736386 + L2 LINE L2 3263 3311 -2 24 0 0 0 chr6 117678882 117678906 -64736336 + AT_rich Low_complexity Low_complexity 1 24 0 1834 112 19 15 chr6 117679122 117679381 -64735861 + AluSq SINE Alu 1 260 -53 1428 174 64 7 chr6 117679576 117679858 -64735384 + AluJo SINE Alu 1 298 -14 240 59 0 0 chr6 117681634 117681668 -64733574 + (TG)n Simple_repeat Simple_repeat 2 35 0 469 116 0 0 chr6 117681996 117682065 -64733177 - U3 snRNA snRNA -148 69 1 762 126 0 17 chr6 117682856 117682975 -64732267 - AluJb SINE Alu -195 117 1 247 303 11 34 chr6 117682994 117683083 -64732159 - MIR3 SINE MIR -14 194 108 2311 83 0 0 chr6 117683274 117683562 -64731680 + AluY SINE Alu 1 288 -23 29 0 0 0 chr6 117683817 117683846 -64731396 + AT_rich Low_complexity Low_complexity 1 29 0 462 283 58 14 chr6 117685809 117685947 -64729295 - L2 LINE L2 -5 3308 3165 208 0 62 0 chr6 117686206 117686238 -64729004 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 257 299 82 52 chr6 117686391 117686525 -64728717 + MIR SINE MIR 31 168 -94 319 318 46 68 chr6 117687482 117687745 -64727497 + L2 LINE L2 2540 2807 -465 2078 82 50 11 chr6 117687745 117688026 -64727216 - AluSc SINE Alu -17 292 1 319 318 46 68 chr6 117688026 117688308 -64726934 + L2 LINE L2 2807 3078 -194 587 65 0 0 chr6 117688541 117688618 -64726624 + Alu SINE Alu 224 300 -10 2101 144 3 0 chr6 117688930 117689235 -64726007 + AluJo SINE Alu 1 306 -6 24 32 0 0 chr6 117689444 117689475 -64725767 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr6 117691250 117691275 -64723967 + GC_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 117691283 117691307 -64723935 + GC_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr6 117693053 117693073 -64722169 + (A)n Simple_repeat Simple_repeat 1 20 0 453 281 10 73 chr6 117694238 117694355 -64720887 + MIR SINE MIR 8 110 -152 1581 53 0 24 chr6 117694355 117694564 -64720678 + L1PA6 LINE L1 5950 6153 -1 453 281 10 73 chr6 117694564 117694638 -64720604 + MIR SINE MIR 110 187 -75 920 267 66 82 chr6 117695506 117696116 -64719126 - L1MC4a LINE L1 -1892 5916 5317 2097 103 24 7 chr6 117696130 117696420 -64718822 + AluSc SINE Alu 1 295 -14 248 227 147 12 chr6 117696677 117696840 -64718402 - L1MC4a LINE L1 -1098 5048 4864 26 0 0 0 chr6 117697276 117697302 -64717940 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr6 117697575 117697601 -64717641 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr6 117697618 117697653 -64717589 + AT_rich Low_complexity Low_complexity 1 35 0 4154 147 46 41 chr6 117700408 117701293 -64713949 - L1MC2 LINE L1 -24 6320 5431 220 294 59 59 chr6 117702470 117702589 -64712653 - L2 LINE L2 0 3313 3195 250 286 170 41 chr6 117703180 117703327 -64711915 + MIR SINE MIR 82 247 -15 1522 119 14 18 chr6 117703814 117704091 -64711151 - L1MC1 LINE L1 -335 5998 5723 499 44 0 15 chr6 117704091 117704159 -64711083 - THE1B LTR MaLR 0 364 298 457 297 57 44 chr6 117704670 117704899 -64710343 - L2 LINE L2 -2 3311 3080 971 168 6 19 chr6 117705059 117705220 -64710022 - FRAM SINE Alu -14 162 4 2458 66 0 7 chr6 117705855 117706160 -64709082 + AluY SINE Alu 1 303 -8 196 386 0 50 chr6 117706571 117706672 -64708570 + MIR3 SINE MIR 14 109 -99 1407 153 4 18 chr6 117706688 117706917 -64708325 - AluJo SINE Alu 0 312 87 609 227 0 15 chr6 117706983 117707115 -64708127 + FLAM_A SINE Alu 4 133 0 1650 163 0 58 chr6 117708442 117708755 -64706487 + AluJb SINE Alu 1 295 -17 1545 213 3 3 chr6 117709317 117709599 -64705643 + AluJo SINE Alu 1 282 -30 234 0 0 0 chr6 117709604 117709630 -64705612 + (CA)n Simple_repeat Simple_repeat 2 27 0 27 0 0 0 chr6 117711196 117711223 -64704019 + AT_rich Low_complexity Low_complexity 1 27 0 183 234 0 0 chr6 117711343 117711467 -64703775 + (TA)n Simple_repeat Simple_repeat 1 124 0 2149 120 0 0 chr6 117711556 117711840 -64703402 + AluSx SINE Alu 1 284 -28 1773 150 45 7 chr6 117712765 117713052 -64702190 + AluSx SINE Alu 1 298 -14 274 350 51 38 chr6 117715839 117716076 -64699166 + L1M3d LINE L1 1 240 -5651 4265 167 66 30 chr6 117716078 117716239 -64699003 + L1MB2 LINE L1 4277 4431 -1740 1596 168 62 50 chr6 117716239 117716596 -64698646 + MLT1A1 LTR MaLR 5 365 0 4265 167 66 30 chr6 117716596 117716622 -64698620 + L1MB2 LINE L1 4431 4455 -1716 2220 121 6 35 chr6 117716622 117716969 -64698273 - MER1B DNA MER1_type 0 337 1 4265 167 66 30 chr6 117716969 117717742 -64697500 + L1MB2 LINE L1 4455 5199 -972 1927 107 26 48 chr6 117717742 117718051 -64697191 + AluSc SINE Alu 1 302 -7 4265 167 66 30 chr6 117718051 117718366 -64696876 + L1MB2 LINE L1 5199 5501 -670 1240 208 132 15 chr6 117718366 117718693 -64696549 + MLT1A1 LTR MaLR 1 365 0 4265 167 66 30 chr6 117718693 117718891 -64696351 + L1MB2 LINE L1 5501 5691 -480 2206 107 3 26 chr6 117718891 117719200 -64696042 + AluSx SINE Alu 1 302 -10 4265 167 66 30 chr6 117719200 117719535 -64695707 + L1MB2 LINE L1 5691 6161 -10 667 161 17 0 chr6 117719946 117720064 -64695178 - AluSx SINE Alu -5 307 188 30676 91 9 26 chr6 117720064 117725852 -64689390 + L1PA7 LINE L1 473 6154 0 1484 117 0 0 chr6 117725869 117726066 -64689176 - AluSx SINE Alu -115 197 1 613 176 8 8 chr6 117726195 117726314 -64688928 - FLAM_C SINE Alu -12 131 13 308 261 122 16 chr6 117726552 117726677 -64688565 - MIR SINE MIR -63 145 19 666 179 0 55 chr6 117727677 117727822 -64687420 - FLAM_C SINE Alu -6 137 1 1383 207 17 30 chr6 117727891 117728190 -64687052 + AluJb SINE Alu 1 295 -17 2154 111 7 0 chr6 117728920 117729218 -64686024 - AluSx SINE Alu -12 300 1 1884 126 47 4 chr6 117729641 117729918 -64685324 - AluSx SINE Alu -23 289 1 2280 108 3 3 chr6 117730063 117730370 -64684872 + AluSx SINE Alu 3 309 -3 1834 166 21 7 chr6 117730811 117731100 -64684142 - AluJo SINE Alu -19 293 1 585 201 35 24 chr6 117731158 117731327 -64683915 + MER112 DNA MER1_type 47 217 -43 200 361 31 10 chr6 117732524 117732621 -64682621 + MIR SINE MIR 38 136 -126 1065 220 162 0 chr6 117733062 117733358 -64681884 - MER2 DNA MER2_type 0 344 1 473 234 57 69 chr6 117733956 117734131 -64681111 + MER5B DNA MER1_type 1 173 -5 305 306 111 0 chr6 117734414 117734522 -64680720 - MIR SINE MIR -19 243 124 263 269 0 0 chr6 117734538 117734605 -64680637 - MER5B DNA MER1_type -111 67 1 26 30 0 0 chr6 117734868 117734901 -64680341 + AT_rich Low_complexity Low_complexity 1 33 0 1896 148 3 30 chr6 117734907 117735212 -64680030 + AluJo SINE Alu 1 297 -15 2226 91 0 52 chr6 117736060 117736369 -64678873 - AluSx SINE Alu -19 293 1 1837 146 19 16 chr6 117737830 117738138 -64677104 - AluJo SINE Alu -3 309 1 487 251 123 5 chr6 117738247 117738442 -64676800 - L1MB8 LINE L1 -222 5899 5682 1187 250 141 18 chr6 117739801 117740382 -64674860 + L2 LINE L2 2632 3286 -27 415 141 0 77 chr6 117740794 117740872 -64674370 + AluJb SINE Alu 62 133 -179 2070 116 7 7 chr6 117740875 117741194 -64674048 + AluSx SINE Alu 1 319 0 710 252 117 0 chr6 117741913 117742119 -64673123 + MIR SINE MIR 28 257 -5 786 178 28 10 chr6 117742540 117742808 -64672434 - MLT1A2 LTR MaLR 0 390 26 205 286 0 0 chr6 117742809 117742865 -64672377 - MIR SINE MIR -127 135 80 2152 120 0 0 chr6 117743865 117744149 -64671093 - AluSx SINE Alu -26 286 3 1763 183 0 14 chr6 117744151 117744446 -64670796 - AluJb SINE Alu -21 291 1 383 241 43 9 chr6 117745324 117745440 -64669802 + MIR SINE MIR 63 182 -80 1413 223 24 40 chr6 117745661 117746037 -64669205 + MLT1A2 LTR MaLR 1 370 -4 2044 122 3 7 chr6 117746226 117746514 -64668728 - AluSg SINE Alu -19 291 5 1306 202 23 85 chr6 117746620 117747007 -64668235 + MLT1A2 LTR MaLR 1 363 -11 450 119 0 0 chr6 117747222 117747289 -64667953 - L1MB7 LINE L1 -19 6165 6099 788 197 53 0 chr6 117748243 117748395 -64666847 - MER20 DNA MER1_type -4 215 56 272 311 10 19 chr6 117748459 117748562 -64666680 + L1ME2 LINE L1 6061 6162 -2 281 290 103 19 chr6 117748793 117748900 -64666342 - MIR SINE MIR -119 143 28 192 284 189 0 chr6 117749717 117749812 -64665430 + MIR SINE MIR 98 210 -52 3760 110 17 16 chr6 117750070 117750627 -64664615 - L1PA13 LINE L1 0 6163 5603 2266 129 0 0 chr6 117750627 117750937 -64664305 - AluSx SINE Alu -2 310 1 3760 110 17 16 chr6 117750937 117750954 -64664288 - L1PA13 LINE L1 -560 5603 5588 243 211 28 56 chr6 117751441 117751512 -64663730 - MIR SINE MIR -9 253 185 281 238 50 40 chr6 117753423 117753524 -64661718 - MIR SINE MIR -109 153 52 417 223 58 25 chr6 117756813 117756934 -64658308 + MER5B DNA MER1_type 5 129 -49 30 0 0 0 chr6 117756934 117756964 -64658278 + AT_rich Low_complexity Low_complexity 1 30 0 1603 132 30 68 chr6 117757000 117757320 -64657922 - AluSx SINE Alu 0 309 1 245 238 16 0 chr6 117757320 117757383 -64657859 + MER5B DNA MER1_type 114 177 -1 1573 245 69 9 chr6 117759018 117759454 -64655788 - LTR37B LTR ERV1 -1 467 6 243 0 0 0 chr6 117759749 117759776 -64655466 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 749 137 130 8 chr6 117759789 117759920 -64655322 - AluJo SINE Alu -73 239 93 2774 141 33 68 chr6 117760017 117760586 -64654656 + LTR9 LTR ERV1 1 549 -63 993 114 0 0 chr6 117760589 117760721 -64654521 - AluSg/x SINE Alu -25 287 156 2891 118 7 5 chr6 117761164 117761587 -64653655 - MSTA LTR MaLR -4 424 1 897 131 0 29 chr6 117761741 117761878 -64653364 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr6 117762242 117762263 -64652979 + (A)n Simple_repeat Simple_repeat 1 21 0 44 35 0 0 chr6 117762275 117762333 -64652909 + AT_rich Low_complexity Low_complexity 1 58 0 517 150 23 35 chr6 117762371 117762504 -64652738 + AluJb SINE Alu 1 193 -119 23 33 0 0 chr6 117762827 117762857 -64652385 + AT_rich Low_complexity Low_complexity 1 30 0 2282 80 10 26 chr6 117762863 117763175 -64652067 + AluY SINE Alu 1 307 -4 310 248 57 67 chr6 117763401 117763506 -64651736 - MER5A DNA MER1_type -10 179 76 194 206 0 0 chr6 117763705 117763739 -64651503 - L3 LINE CR1 -134 1443 1410 1984 138 3 0 chr6 117764307 117764616 -64650626 + AluSx SINE Alu 1 310 0 192 77 0 0 chr6 117764746 117764772 -64650470 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 633 257 123 48 chr6 117764880 117765120 -64650122 + L1M4 LINE L1 2722 2943 -3203 2281 115 0 3 chr6 117765120 117765425 -64649817 + AluSx SINE Alu 1 304 -8 633 257 123 48 chr6 117765425 117765721 -64649521 + L1M4 LINE L1 2943 3298 -2848 905 279 12 12 chr6 117765748 117765999 -64649243 + MIR SINE MIR 7 257 -5 2276 230 29 63 chr6 117766005 117766703 -64648539 + L1PA14 LINE L1 3289 3957 -2189 2292 89 3 0 chr6 117766703 117767009 -64648233 + AluSx SINE Alu 2 308 0 2276 230 29 63 chr6 117767009 117767259 -64647983 + L1PA14 LINE L1 3957 4214 -1932 6408 78 5 34 chr6 117767363 117768035 -64647207 + L1PA14 LINE L1 4219 4909 -1252 2682 46 0 0 chr6 117768035 117768342 -64646900 + AluY SINE Alu 1 307 -4 6408 78 5 34 chr6 117768342 117768794 -64646448 + L1PA14 LINE L1 4909 5373 -788 2457 81 0 3 chr6 117768794 117769090 -64646152 + AluSp SINE Alu 1 295 -18 6408 78 5 34 chr6 117769090 117769950 -64645292 + L1PA14 LINE L1 5373 6161 0 2531 63 3 0 chr6 117769964 117770266 -64644976 + AluY SINE Alu 1 303 -8 407 276 207 21 chr6 117770266 117770599 -64644643 + L1M4 LINE L1 3907 4301 -1845 21 57 0 0 chr6 117770619 117770654 -64644588 + AT_rich Low_complexity Low_complexity 1 35 0 1715 164 0 63 chr6 117770715 117771033 -64644209 - AluJb SINE Alu -14 298 1 1714 166 3 30 chr6 117771076 117771377 -64643865 + AluJb SINE Alu 1 293 -19 523 260 132 4 chr6 117771378 117771628 -64643614 + L1M4 LINE L1 4710 4991 -1155 745 194 35 41 chr6 117771714 117771884 -64643358 + L1PA16 LINE L1 5998 6166 0 22 0 0 0 chr6 117773137 117773159 -64642083 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 117773290 117773312 -64641930 + AT_rich Low_complexity Low_complexity 1 22 0 287 266 83 9 chr6 117773483 117773592 -64641650 + MIR SINE MIR 90 206 -56 2088 139 0 0 chr6 117774124 117774418 -64640824 - AluSx SINE Alu -18 294 1 211 311 25 33 chr6 117775203 117775325 -64639917 + L2 LINE L2 2731 2851 -463 509 275 0 35 chr6 117775350 117775521 -64639721 + L2 LINE L2 3148 3312 -1 2014 67 0 0 chr6 117776386 117776624 -64638618 - AluSx SINE Alu -74 238 1 180 245 0 0 chr6 117776910 117776963 -64638279 + GA-rich Low_complexity Low_complexity 4 56 0 853 176 0 36 chr6 117778423 117778588 -64636654 + AluSg/x SINE Alu 135 293 -17 1211 120 0 0 chr6 117780513 117780680 -64634562 + AluSg/x SINE Alu 144 310 -2 635 225 44 4 chr6 117780763 117780953 -64634289 + L1MD2 LINE L1 6198 6349 -10 1273 171 35 42 chr6 117780953 117781239 -64634003 + L1ME2 LINE L1 5879 6162 -2 360 221 82 0 chr6 117782020 117782167 -64633075 - MIR SINE MIR -19 243 85 21 0 0 0 chr6 117782356 117782377 -64632865 + AT_rich Low_complexity Low_complexity 1 21 0 251 308 34 14 chr6 117782689 117782835 -64632407 + L2 LINE L2 2154 2302 -1012 2045 90 0 102 chr6 117782878 117783200 -64632042 + AluSx SINE Alu 1 289 -23 31 0 0 0 chr6 117783200 117783231 -64632011 + AT_rich Low_complexity Low_complexity 1 31 0 2365 102 0 10 chr6 117785602 117785907 -64629335 + AluSq SINE Alu 1 302 -11 300 91 0 0 chr6 117786669 117786713 -64628529 + (CA)n Simple_repeat Simple_repeat 1 44 0 241 328 30 5 chr6 117786810 117786982 -64628260 + L1ME4a LINE L1 5723 5823 -298 268 194 65 93 chr6 117787180 117787319 -64627923 + L1ME4a LINE L1 5987 6121 0 1185 103 6 0 chr6 117790193 117790358 -64624884 - L1M1 LINE L1 -573 5732 5567 1521 145 52 38 chr6 117790387 117790676 -64624566 - AluJo SINE Alu -19 293 1 2445 89 0 0 chr6 117791026 117791330 -64623912 + AluSg SINE Alu 1 304 -6 2093 137 0 0 chr6 117791779 117792072 -64623170 - AluSq SINE Alu -20 293 1 1361 165 52 16 chr6 117792094 117792343 -64622899 - AluJo SINE Alu -15 297 40 257 300 75 0 chr6 117792427 117792507 -64622735 - L2 LINE L2 -10 3262 3177 463 218 204 0 chr6 117792656 117792798 -64622444 + MER5A DNA MER1_type 19 189 0 225 94 0 0 chr6 117793383 117793415 -64621827 + (A)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chr6 117793660 117793680 -64621562 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 242 203 34 0 chr6 117793700 117793759 -64621483 + A-rich Low_complexity Low_complexity 3 63 0 240 248 115 62 chr6 117793985 117794076 -64621166 + L2 LINE L2 3127 3227 -45 1811 162 3 19 chr6 117794076 117794385 -64620857 + AluJo SINE Alu 1 304 -8 240 248 115 62 chr6 117794385 117794406 -64620836 + L2 LINE L2 3227 3245 -27 299 236 45 22 chr6 117794917 117795006 -64620236 + L3 LINE CR1 1478 1568 -9 286 169 0 39 chr6 117795268 117795345 -64619897 + CT-rich Low_complexity Low_complexity 2 75 0 242 155 35 35 chr6 117796153 117796211 -64619031 + CT-rich Low_complexity Low_complexity 2 59 0 685 179 17 0 chr6 117797476 117797593 -64617649 + FLAM_C SINE Alu 24 142 -1 1730 165 0 0 chr6 117797685 117797946 -64617296 - AluSx SINE Alu -23 289 29 1025 193 277 16 chr6 117798666 117799140 -64616102 + L1MC4 LINE L1 7143 7680 -128 2016 137 3 3 chr6 117799144 117799443 -64615799 + AluSx SINE Alu 1 299 -13 2397 81 13 10 chr6 117799446 117799755 -64615487 + AluSg SINE Alu 1 310 0 316 343 41 7 chr6 117800011 117800157 -64615085 - MIR3 SINE MIR -24 184 34 425 341 88 14 chr6 117801651 117801868 -64613374 + MIR SINE MIR 4 236 -26 355 342 9 0 chr6 117802047 117802158 -64613084 - MIR SINE MIR -72 190 79 251 113 19 0 chr6 117802567 117802620 -64612622 + GA-rich Low_complexity Low_complexity 2 55 0 456 194 40 23 chr6 117802674 117802785 -64612457 + MIR SINE MIR 12 115 -93 255 235 101 25 chr6 117802790 117802909 -64612333 + L1ME4a LINE L1 5991 6118 -3 28 48 0 0 chr6 117802955 117802997 -64612245 + AT_rich Low_complexity Low_complexity 1 42 0 683 236 177 20 chr6 117803506 117803709 -64611533 - MER46C DNA MER2_type 0 338 104 22 0 0 0 chr6 117803893 117803915 -64611327 + AT_rich Low_complexity Low_complexity 1 22 0 566 271 0 69 chr6 117805361 117805549 -64609693 - AluSg/x SINE Alu -9 300 126 198 103 0 0 chr6 117805695 117805724 -64609518 + (TTTCC)n Simple_repeat Simple_repeat 2 30 0 538 138 0 36 chr6 117805787 117805925 -64609317 + (TCCCC)n Simple_repeat Simple_repeat 2 134 0 1610 159 50 27 chr6 117806517 117806818 -64608424 - AluJb SINE Alu -4 308 1 2925 196 19 11 chr6 117806850 117807422 -64607820 - L1MD3 LINE L1 -15 7980 7404 528 208 39 45 chr6 117808229 117808383 -64606859 - L1ME4a LINE L1 -4 6117 5965 1156 252 94 40 chr6 117809430 117809911 -64605331 - MLT1J LTR MaLR 0 511 5 370 300 100 6 chr6 117810280 117810440 -64604802 - MIR SINE MIR -18 244 70 1332 180 64 22 chr6 117812740 117813051 -64602191 - MER33 DNA MER1_type 0 324 1 2219 104 0 0 chr6 117813549 117813838 -64601404 - AluSq SINE Alu -24 289 1 2085 128 28 0 chr6 117814591 117814880 -64600362 - AluSx SINE Alu -15 297 1 241 330 120 34 chr6 117814932 117815371 -64599871 + L2 LINE L2 2686 3162 -110 456 312 41 6 chr6 117815388 117815558 -64599684 - L2 LINE L2 0 3313 3138 665 219 183 13 chr6 117815593 117815817 -64599425 - L2 LINE L2 -771 2543 2282 2012 141 10 3 chr6 117817039 117817330 -64597912 + AluSx SINE Alu 1 293 -19 2280 87 0 11 chr6 117817387 117817674 -64597568 + AluSc SINE Alu 2 285 -24 30 27 0 0 chr6 117818032 117818069 -64597173 + AT_rich Low_complexity Low_complexity 1 37 0 2387 84 3 0 chr6 117818078 117818377 -64596865 + AluSx SINE Alu 1 300 -12 4104 141 50 8 chr6 117818380 117819045 -64596197 + L1MB3 LINE L1 5483 6175 -8 290 26 26 0 chr6 117819073 117819112 -64596130 + (GA)n Simple_repeat Simple_repeat 1 40 0 594 237 33 50 chr6 117819128 117819360 -64595882 - MER106B DNA MER1_type 0 1059 1 1524 359 62 36 chr6 117819529 117819980 -64595262 - L2 LINE L2 0 3272 2834 1284 180 28 0 chr6 117819980 117820191 -64595051 - MER20 DNA MER1_type -2 217 1 1524 359 62 36 chr6 117820191 117820463 -64594779 - L2 LINE L2 -438 2834 2571 2632 195 115 48 chr6 117820463 117821237 -64594005 - LTR1B LTR ERV1 0 826 1 1524 359 62 36 chr6 117821237 117822032 -64593210 - L2 LINE L2 -701 2571 1721 1729 195 96 12 chr6 117822411 117822837 -64592405 - MLT1C LTR MaLR 0 467 6 435 256 86 42 chr6 117822927 117823138 -64592104 - MIR SINE MIR -46 216 1 23 0 0 0 chr6 117826489 117826512 -64588730 + AT_rich Low_complexity Low_complexity 1 23 0 229 298 155 61 chr6 117827731 117828135 -64587107 - L2 LINE L2 -741 2573 2208 2246 112 0 3 chr6 117828135 117828431 -64586811 - AluSx SINE Alu -14 298 4 229 298 155 61 chr6 117828431 117828697 -64586545 - L2 LINE L2 -1106 2208 1840 1464 69 0 11 chr6 117829065 117829253 -64585989 - AluY SINE Alu -7 304 119 43799 32 22 1 chr6 117829276 117835304 -64579938 - L1PA2 LINE L1 0 6155 1 1045 92 8 0 chr6 117835308 117835439 -64579803 - AluY SINE Alu -179 132 1 568 160 40 0 chr6 117836671 117836771 -64578471 - MER53 DNA DNA -85 104 1 437 163 34 47 chr6 117837509 117837631 -64577611 - MER34 LTR ERV1 0 542 452 191 260 0 60 chr6 117838298 117838348 -64576894 - MIR SINE MIR -196 66 20 202 384 0 14 chr6 117840351 117840424 -64574818 - L2 LINE L2 -67 3205 3134 2481 47 7 7 chr6 117841179 117841477 -64573765 - AluY SINE Alu -13 298 1 30 59 0 0 chr6 117842223 117842274 -64572968 + AT_rich Low_complexity Low_complexity 1 51 0 503 217 14 138 chr6 117842319 117842536 -64572706 + MIR3 SINE MIR 10 199 -9 683 319 82 14 chr6 117842870 117843490 -64571752 - L1ME4a LINE L1 -151 5970 5309 2108 147 0 3 chr6 117843600 117843912 -64571330 - AluJb SINE Alu -1 311 1 21 0 0 0 chr6 117844074 117844095 -64571147 + AT_rich Low_complexity Low_complexity 1 21 0 1962 157 3 6 chr6 117844099 117844411 -64570831 + AluSx SINE Alu 2 312 0 22 0 0 0 chr6 117844630 117844652 -64570590 + AT_rich Low_complexity Low_complexity 1 22 0 356 219 69 62 chr6 117845139 117845299 -64569943 + MIR SINE MIR 56 216 -46 2325 91 0 3 chr6 117845345 117845641 -64569601 + AluY SINE Alu 1 295 -16 593 217 5 142 chr6 117845793 117846005 -64569237 - MIR SINE MIR -56 206 24 264 393 22 0 chr6 117846559 117846694 -64568548 + L2 LINE L2 3168 3305 -8 510 307 74 0 chr6 117846984 117847173 -64568069 - MIR SINE MIR -7 255 53 219 319 0 29 chr6 117847293 117847362 -64567880 - L2 LINE L2 -176 3096 3030 2297 129 10 77 chr6 117847365 117847783 -64567459 + MLT1B LTR MaLR 1 390 0 1521 208 10 10 chr6 117847859 117848152 -64567090 + AluJo SINE Alu 7 299 -13 615 170 7 14 chr6 117848169 117848310 -64566932 + GA-rich Low_complexity Low_complexity 1 140 0 227 258 117 23 chr6 117848491 117848619 -64566623 - L2 LINE L2 -1126 2188 2049 946 200 9 60 chr6 117850077 117850292 -64564950 - MER20 DNA MER1_type 0 219 16 1207 175 66 126 chr6 117850771 117851137 -64564105 + MER2 DNA MER2_type 2 345 0 288 299 71 8 chr6 117851171 117851298 -64563944 - MIR SINE MIR -50 212 78 1008 195 0 0 chr6 117851460 117851624 -64563618 + FRAM SINE Alu 1 163 -13 187 298 50 16 chr6 117851708 117851829 -64563413 - L2 LINE L2 -1258 2056 1932 1512 192 131 39 chr6 117852236 117852317 -64562925 - MSTD LTR MaLR 0 396 324 8731 61 3 4 chr6 117852317 117853389 -64561853 + MER11C LTR ERVK 1 1071 0 1512 192 131 39 chr6 117853389 117853667 -64561575 - MSTD LTR MaLR -72 324 4 295 252 0 17 chr6 117854433 117854552 -64560690 + CT-rich Low_complexity Low_complexity 1 117 0 4459 183 63 38 chr6 117854637 117854676 -64560566 - L1MB7 LINE L1 -17 6167 6130 2113 125 3 3 chr6 117854676 117854971 -64560271 + AluSc SINE Alu 1 295 -14 4459 183 63 38 chr6 117854971 117855392 -64559850 - L1MB7 LINE L1 -54 6130 5721 2120 114 0 0 chr6 117855392 117855701 -64559541 - AluY SINE Alu 0 309 1 4459 183 63 38 chr6 117855701 117856860 -64558382 - L1MB7 LINE L1 -463 5721 4499 14430 116 51 41 chr6 117856860 117857783 -64557459 - Tigger1 DNA MER2_type -1 2417 1505 1365 102 25 86 chr6 117857783 117858027 -64557215 + MER30 DNA MER1_type 1 229 -1 14430 116 51 41 chr6 117858027 117859495 -64555747 - Tigger1 DNA MER2_type -913 1505 2 2486 210 10 19 chr6 117859495 117859747 -64555495 - L1MB7 LINE L1 -1644 4502 4249 195 100 0 0 chr6 117859747 117859777 -64555465 + (TG)n Simple_repeat Simple_repeat 2 31 0 2486 210 10 19 chr6 117859777 117860120 -64555122 - L1MB7 LINE L1 -1897 4249 3912 458 203 55 31 chr6 117860103 117860231 -64555011 - L1MC4a LINE L1 -1901 5907 5777 * 1883 184 0 0 chr6 117860387 117860686 -64554556 - AluJo SINE Alu -13 299 1 1002 315 82 51 chr6 117862461 117863039 -64552203 + L2 LINE L2 1840 2463 -851 2162 134 0 3 chr6 117863039 117863337 -64551905 - AluSx SINE Alu -15 297 1 1002 315 82 51 chr6 117863337 117863743 -64551499 + L2 LINE L2 2463 2855 -459 2314 209 43 10 chr6 117864155 117864914 -64550328 + L1MD1 LINE L1 5345 6184 0 1373 192 39 70 chr6 117865109 117865495 -64549747 - MLT1A2 LTR MaLR 0 374 1 239 200 50 25 chr6 117866233 117866313 -64548929 + CT-rich Low_complexity Low_complexity 3 84 0 299 296 0 0 chr6 117866563 117866634 -64548608 + C-rich Low_complexity Low_complexity 5 75 0 236 179 54 0 chr6 117867134 117867190 -64548052 + CT-rich Low_complexity Low_complexity 5 63 0 2289 92 0 7 chr6 117867286 117867579 -64547663 - AluSc SINE Alu -18 291 1 2238 114 0 25 chr6 117867580 117867895 -64547347 - AluSx SINE Alu -5 307 1 1565 227 119 9 chr6 117869610 117870029 -64545213 - LTR40c LTR ERVL 0 465 1 329 279 145 23 chr6 117871222 117871394 -64543848 + MER117 DNA MER1_type 5 197 0 604 294 107 6 chr6 117871678 117871855 -64543387 - MER91A DNA MER1_type -1 195 1 246 363 27 0 chr6 117871993 117872139 -64543103 - L2 LINE L2 -212 3060 2911 879 147 0 12 chr6 117872410 117872576 -64542666 + L1MB3 LINE L1 5982 6143 -38 2018 130 11 11 chr6 117873101 117873424 -64541818 - AluSq SINE Alu 0 323 1 2009 89 0 0 chr6 117873454 117873701 -64541541 + AluSq SINE Alu 1 247 -66 1948 160 3 0 chr6 117873944 117874250 -64540992 + AluSx SINE Alu 1 307 -5 635 155 0 0 chr6 117875935 117876038 -64539204 - U13 snRNA snRNA -1 103 1 325 98 0 20 chr6 117876089 117876140 -64539102 + L1MB3 LINE L1 6127 6176 -7 370 350 67 47 chr6 117876680 117877175 -64538067 - L2 LINE L2 -2110 1204 700 383 127 0 0 chr6 117877685 117877750 -64537492 + L1P4 LINE L1 5692 5756 -407 194 111 50 50 chr6 117877820 117877919 -64537323 + (TTAA)n Simple_repeat Simple_repeat 4 102 0 2043 106 0 0 chr6 117878279 117878553 -64536689 - AluY SINE Alu -1 310 37 331 306 100 6 chr6 117878562 117878722 -64536520 + MIR SINE MIR 53 227 -35 395 281 168 0 chr6 117880575 117880778 -64534464 + MIR SINE MIR 20 256 -6 240 263 0 0 chr6 117884348 117884424 -64530818 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 302 235 15 15 chr6 117886363 117886431 -64528811 - MIR SINE MIR -174 88 21 1453 219 61 0 chr6 117887172 117887482 -64527760 + MER58B DNA MER1_type 2 330 -11 2277 57 27 44 chr6 117887483 117887781 -64527461 + AluY SINE Alu 1 293 -18 1809 128 69 0 chr6 117888074 117888364 -64526878 - AluSx SINE Alu -2 310 1 839 204 23 12 chr6 117888450 117888622 -64526620 + FRAM SINE Alu 1 173 -3 2369 196 59 8 chr6 117888967 117889461 -64525781 - LTR53 LTR ERVL 0 519 1 21 36 0 0 chr6 117889976 117890004 -64525238 + AT_rich Low_complexity Low_complexity 1 28 0 36 53 0 0 chr6 117890112 117890169 -64525073 + AT_rich Low_complexity Low_complexity 1 57 0 784 70 0 0 chr6 117890172 117890272 -64524970 + HY3 scRNA scRNA 2 101 0 705 218 7 0 chr6 117890292 117890434 -64524808 - MER3 DNA MER1_type -65 144 2 2223 205 108 19 chr6 117891285 117891806 -64523436 - MLT1F1 LTR MaLR 0 567 1 21 36 0 0 chr6 117892336 117892364 -64522878 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 117893237 117893273 -64521969 + AT_rich Low_complexity Low_complexity 1 36 0 332 271 94 0 chr6 117893323 117893408 -64521834 + L1MC5 LINE L1 7767 7859 -102 1801 142 4 0 chr6 117893506 117893781 -64521461 + AluSx SINE Alu 1 276 -36 261 0 0 0 chr6 117893787 117893816 -64521426 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 588 338 81 3 chr6 117894905 117895239 -64520003 + L2 LINE L2 1757 2116 -1198 1057 171 134 16 chr6 117895270 117895516 -64519726 + ORSL DNA AcHobo 1 275 0 856 279 5 19 chr6 117895559 117895774 -64519468 - MIR SINE MIR -43 219 8 * 859 301 106 55 chr6 117895738 117896578 -64518664 + L2 LINE L2 2126 3063 -209 456 296 271 25 chr6 117896595 117896953 -64518289 - MLT1L LTR MaLR 0 615 170 35 0 0 0 chr6 117897251 117897286 -64517956 + AT_rich Low_complexity Low_complexity 1 35 0 259 311 223 0 chr6 117897353 117897456 -64517786 + MIR3 SINE MIR 33 158 -50 2113 101 0 3 chr6 117899317 117899644 -64515598 + AluSq SINE Alu 1 326 0 2025 79 65 0 chr6 117900887 117901164 -64514078 - AluSg SINE Alu -15 295 1 310 221 250 0 chr6 117902144 117902248 -64512994 + MER45C DNA AcHobo 3 132 -821 1794 243 106 5 chr6 117902482 117902927 -64512315 + MER45C DNA AcHobo 464 953 0 1884 140 0 16 chr6 117904117 117904424 -64510818 + AluJb SINE Alu 1 302 -10 206 268 0 18 chr6 117904499 117904555 -64510687 - L3 LINE CR1 -443 1134 1080 304 156 359 0 chr6 117904763 117904827 -64510415 + Charlie7 DNA MER1_type 1 87 -2525 728 217 41 62 chr6 117904907 117905027 -64510215 + Charlie7 DNA MER1_type 452 566 -2046 1645 175 20 7 chr6 117905027 117905330 -64509912 - AluJo SINE Alu -4 308 2 728 217 41 62 chr6 117905330 117905453 -64509789 + Charlie7 DNA MER1_type 566 690 -1922 222 119 34 51 chr6 117905476 117905535 -64509707 + A-rich Low_complexity Low_complexity 3 60 0 3019 153 35 4 chr6 117905957 117906498 -64508744 + L1MC1 LINE L1 5776 6333 0 269 140 0 20 chr6 117906500 117906517 -64508725 + AluSg/x SINE Alu 120 135 -165 592 82 0 5 chr6 117906517 117906737 -64508505 + AluSq SINE Alu 3 303 0 481 171 154 0 chr6 117907250 117907373 -64507869 + MER103 DNA DNA 13 154 -12 3837 253 114 31 chr6 117909108 117910714 -64504528 - L2 LINE L2 0 3313 1569 729 239 83 17 chr6 117910743 117910973 -64504269 - L1MC4a LINE L1 -1876 5932 5688 26 50 0 0 chr6 117910974 117911014 -64504228 + AT_rich Low_complexity Low_complexity 1 40 0 2234 92 0 10 chr6 117911354 117911681 -64503561 - AluSp SINE Alu 0 313 1 1304 178 13 0 chr6 117912617 117912848 -64502394 - AluJb SINE Alu -18 294 61 1079 202 21 37 chr6 117913305 117913548 -64501694 - MER8 DNA MER2_type 0 239 1 1950 103 34 14 chr6 117913930 117914221 -64501021 - AluSx SINE Alu -7 305 9 28 29 0 0 chr6 117914617 117914652 -64500590 + AT_rich Low_complexity Low_complexity 1 35 0 1950 144 50 17 chr6 117915177 117915199 -64500043 + L1MB3 LINE L1 5810 5830 -353 2158 122 0 0 chr6 117915199 117915503 -64499739 + AluSx SINE Alu 1 304 -8 1950 144 50 17 chr6 117915503 117915842 -64499400 + L1MB3 LINE L1 5830 6183 0 240 278 35 35 chr6 117916037 117916139 -64499103 - L3 LINE CR1 -78 1499 1395 1651 136 0 0 chr6 117916139 117916382 -64498860 - AluSx SINE Alu -69 243 1 240 278 35 35 chr6 117916382 117916394 -64498848 - L3 LINE CR1 -181 1396 1385 25 83 0 0 chr6 117918022 117918082 -64497160 + AT_rich Low_complexity Low_complexity 1 60 0 421 279 67 103 chr6 117918087 117918125 -64497117 - L1ME4a LINE L1 -74 6047 6009 1623 131 57 18 chr6 117918125 117918429 -64496813 - AluJo SINE Alu 0 315 1 421 279 67 103 chr6 117918429 117918497 -64496745 - L1ME4a LINE L1 -112 6009 5940 2372 139 5 14 chr6 117918497 117918864 -64496378 + THE1B LTR MaLR 1 364 0 421 279 67 103 chr6 117918864 117919365 -64495877 - L1ME4a LINE L1 -181 5940 5460 252 0 0 0 chr6 117919651 117919679 -64495563 + (CA)n Simple_repeat Simple_repeat 2 29 0 2383 240 63 59 chr6 117919902 117920389 -64494853 + MER115 DNA AcHobo 8 500 -193 2064 120 0 0 chr6 117920389 117920680 -64494562 + AluSx SINE Alu 16 306 -6 2383 240 63 59 chr6 117920680 117920875 -64494367 + MER115 DNA AcHobo 500 693 0 248 180 9 63 chr6 117922299 117922410 -64492832 + T-rich Low_complexity Low_complexity 1 105 0 2049 101 37 0 chr6 117922432 117922730 -64492512 + AluSp SINE Alu 1 309 -4 396 0 0 0 chr6 117923047 117923091 -64492151 + (CA)n Simple_repeat Simple_repeat 1 44 0 1550 200 32 47 chr6 117924586 117924966 -64490276 - MLT1A2 LTR MaLR 0 374 1 1978 140 0 9 chr6 117926597 117926912 -64488330 + AluSx SINE Alu 1 312 0 234 0 0 0 chr6 117927494 117927520 -64487722 + (TG)n Simple_repeat Simple_repeat 2 27 0 2276 105 0 0 chr6 117929527 117929833 -64485409 - AluSx SINE Alu -6 306 1 2065 133 33 15 chr6 117930488 117930818 -64484424 + MER1B DNA MER1_type 2 337 0 561 292 56 37 chr6 117930818 117931028 -64484214 + MIR SINE MIR 17 230 -32 1005 121 0 24 chr6 117931029 117931194 -64484048 + FRAM SINE Alu 16 176 0 1336 168 149 0 chr6 117931210 117931472 -64483770 + AluJb SINE Alu 1 301 -11 256 150 200 88 chr6 117931540 117931620 -64483622 + MIR SINE MIR 28 116 -92 1844 214 63 22 chr6 117932000 117932444 -64482798 - MLT1C LTR MaLR 0 467 6 204 274 137 8 chr6 117932687 117932811 -64482431 + L2 LINE L2 2710 2849 -465 2160 105 7 0 chr6 117933462 117933738 -64481504 + AluSc SINE Alu 1 281 -28 378 0 0 0 chr6 117933738 117933780 -64481462 + (CA)n Simple_repeat Simple_repeat 1 42 0 2160 105 7 0 chr6 117933780 117933798 -64481444 + AluSc SINE Alu 281 297 -12 238 242 136 0 chr6 117933929 117933995 -64481247 + MIR3 SINE MIR 111 185 -23 607 270 167 14 chr6 117934076 117934298 -64480944 + MIR SINE MIR 6 261 -1 331 272 124 66 chr6 117935211 117935605 -64479637 - MLT1K LTR MaLR -53 535 119 394 338 82 46 chr6 117935609 117936132 -64479110 + L2 LINE L2 1294 1835 -1479 1080 203 112 72 chr6 117936133 117936454 -64478788 - MLT1J LTR MaLR -173 338 5 1111 290 101 36 chr6 117936465 117937048 -64478194 + L2 LINE L2 1845 2465 -849 599 143 0 20 chr6 117937292 117937390 -64477852 + FRAM SINE Alu 71 166 -10 2346 83 0 0 chr6 117938146 117938446 -64476796 + AluSq SINE Alu 1 300 -13 1009 232 89 14 chr6 117940471 117940751 -64474491 + LTR41 LTR ERVL 1 301 -472 883 172 168 59 chr6 117940837 117941075 -64474167 + LTR41 LTR ERVL 510 773 0 2910 112 13 70 chr6 117941114 117941568 -64473674 + MSTC LTR MaLR 1 428 0 267 378 32 11 chr6 117941835 117942023 -64473219 + ERVL LTR ERVL 352 543 -5221 9311 280 48 38 chr6 117942063 117944579 -64470663 + ERVL LTR ERVL 1492 4048 -1716 2285 98 56 34 chr6 117944579 117944935 -64470307 + THE1B LTR MaLR 1 364 0 9311 280 48 38 chr6 117944935 117945631 -64469611 + ERVL LTR ERVL 4048 4736 -1028 1361 273 52 18 chr6 117945706 117946145 -64469097 + ERVL LTR ERVL 4874 5327 -437 1658 146 0 0 chr6 117946299 117946553 -64468689 - AluSx SINE Alu 0 307 54 256 264 0 0 chr6 117946574 117946627 -64468615 - ERVL LTR ERVL -2013 3751 3699 362 197 16 0 chr6 117946627 117946688 -64468554 - AluSx SINE Alu -241 62 1 343 221 21 11 chr6 117946937 117947032 -64468210 + LTR41 LTR ERVL 1 96 -677 273 243 117 48 chr6 117947034 117947137 -64468105 + L1MEc LINE L1 457 566 -5830 296 123 25 267 chr6 117947483 117947553 -64467689 + LTR41 LTR ERVL 595 591 -182 2065 112 0 31 chr6 117947553 117947877 -64467365 + AluSx SINE Alu 1 315 0 296 123 25 267 chr6 117947877 117948016 -64467226 + LTR41 LTR ERVL 590 761 -12 2338 97 0 0 chr6 117948056 117948354 -64466888 - AluY SINE Alu -13 298 1 6854 59 39 3 chr6 117948792 117949854 -64465388 + L1PA6 LINE L1 5060 6153 -1 2273 96 0 3 chr6 117950256 117950549 -64464693 + AluSx SINE Alu 1 292 -20 181 328 17 0 chr6 117953085 117953143 -64462099 - L3 LINE CR1 -1042 535 477 228 185 37 0 chr6 117955550 117955604 -64459638 - MER58A DNA MER1_type 0 224 169 393 159 68 34 chr6 117955611 117955699 -64459543 - MER58A DNA MER1_type 0 127 37 342 62 62 0 chr6 117955786 117955834 -64459408 + MADE1 DNA Mariner 30 80 0 2134 119 7 0 chr6 117955916 117956209 -64459033 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 117957704 117957725 -64457517 + AT_rich Low_complexity Low_complexity 1 21 0 604 257 13 26 chr6 117958471 117958623 -64456619 + MER63A DNA MER1_type 61 210 0 204 309 251 36 chr6 117958649 117959290 -64455952 + L2 LINE L2 1969 2747 -567 257 232 152 36 chr6 117959795 117959907 -64455335 + L1ME4a LINE L1 5582 5706 -415 2104 147 0 0 chr6 117959995 117960307 -64454935 + AluSx SINE Alu 1 312 0 229 225 54 54 chr6 117960322 117960433 -64454809 + L1ME4a LINE L1 5919 6029 -92 977 257 189 25 chr6 117960903 117961342 -64453900 + MLT1J LTR MaLR 1 511 0 1725 175 14 3 chr6 117961514 117961800 -64453442 + AluJo SINE Alu 1 289 -23 905 126 8 0 chr6 117962965 117963092 -64452150 + AluSx SINE Alu 5 132 -180 710 206 8 8 chr6 117963886 117964012 -64451230 + FLAM_A SINE Alu 1 126 -7 21 95 0 0 chr6 117966734 117966797 -64448445 + GC_rich Low_complexity Low_complexity 1 63 0 219 301 87 10 chr6 117967865 117967968 -64447274 - MIR3 SINE MIR -1 207 97 286 301 192 30 chr6 117968516 117968633 -64446609 - Charlie7 DNA MER1_type -2376 236 139 2370 79 3 3 chr6 117968633 117968938 -64446304 + AluSx SINE Alu 1 305 -7 286 301 192 30 chr6 117968938 117969023 -64446219 - Charlie7 DNA MER1_type -2473 139 1 1016 191 64 0 chr6 117969258 117969446 -64445796 - MER20 DNA MER1_type 0 219 20 396 304 30 63 chr6 117970098 117970335 -64444907 + L2 LINE L2 2825 3053 -219 1173 138 0 0 chr6 117970592 117970766 -64444476 + AluSg/x SINE Alu 134 307 -3 740 155 80 128 chr6 117971126 117971313 -64443929 - MER5B DNA MER1_type 0 178 1 370 240 115 10 chr6 117971322 117971335 -64443907 + MER5A DNA MER1_type 4 26 -163 188 239 349 18 chr6 117971335 117971444 -64443798 - MER5A DNA MER1_type -2 187 43 2517 80 3 0 chr6 117971477 117971788 -64443454 + AluSx SINE Alu 1 312 0 1390 145 47 8 chr6 117971911 117972145 -64443097 - AluJb SINE Alu -69 243 1 684 149 137 19 chr6 117972929 117973090 -64442152 + MER5A DNA MER1_type 6 185 -4 200 229 185 22 chr6 117973672 117973785 -64441457 - MIR3 SINE MIR -9 199 70 239 250 83 28 chr6 117974802 117974874 -64440368 + MER5B DNA MER1_type 1 76 -102 722 268 141 14 chr6 117974905 117975125 -64440117 - MIR SINE MIR -13 249 2 464 243 69 7 chr6 117975240 117975384 -64439858 + L1MD2 LINE L1 5974 6126 -233 790 159 55 0 chr6 117975391 117975536 -64439706 + L1MD2 LINE L1 6194 6346 -13 2619 58 0 6 chr6 117975664 117975976 -64439266 + AluY SINE Alu 1 310 -1 186 299 149 19 chr6 117976232 117976339 -64438903 + MER5A DNA MER1_type 64 184 -5 343 269 220 31 chr6 117976679 117976837 -64438405 - MLT1J LTR MaLR -19 492 365 2242 90 10 0 chr6 117976837 117977126 -64438116 - AluSc SINE Alu -17 292 1 343 269 220 31 chr6 117977126 117977290 -64437952 - MLT1J LTR MaLR -146 365 109 410 334 93 41 chr6 117977754 117977881 -64437361 + L2 LINE L2 2567 2686 -586 1807 141 3 30 chr6 117977881 117978185 -64437057 - AluJo SINE Alu -16 296 1 410 334 93 41 chr6 117978185 117978719 -64436523 + L2 LINE L2 2686 3272 0 1946 138 10 10 chr6 117978748 117979052 -64436190 + AluSx SINE Alu 1 304 -8 577 311 109 54 chr6 117979516 117979724 -64435518 + L2 LINE L2 2232 2427 -887 1156 151 58 44 chr6 117979724 117979781 -64435461 - MER3 DNA MER1_type 0 209 154 2226 111 0 10 chr6 117979781 117980078 -64435164 + AluSx SINE Alu 1 294 -18 1156 151 58 44 chr6 117980078 117980226 -64435016 - MER3 DNA MER1_type -55 154 1 577 311 109 54 chr6 117980226 117980264 -64434978 + L2 LINE L2 2427 2461 -853 1791 79 9 4 chr6 117980264 117980493 -64434749 - AluSc SINE Alu -9 300 71 2029 81 11 11 chr6 117980493 117980762 -64434480 - AluY SINE Alu -8 303 33 577 311 109 54 chr6 117980762 117981108 -64434134 + L2 LINE L2 2460 2859 -455 281 252 72 36 chr6 117982158 117982269 -64432973 + L2 LINE L2 3154 3268 -4 2281 102 0 0 chr6 117982555 117982849 -64432393 - AluSc SINE Alu -15 294 1 1650 142 58 58 chr6 117983586 117983754 -64431488 - AluJo SINE Alu -1 311 144 288 0 0 0 chr6 117983754 117983786 -64431456 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2152 99 0 3 chr6 117983786 117984068 -64431174 - AluSx SINE Alu -31 281 1 1978 147 10 0 chr6 117984070 117984362 -64430880 - AluSx SINE Alu -17 295 1 1650 142 58 58 chr6 117984362 117984500 -64430742 - AluJo SINE Alu -167 145 1 193 259 118 35 chr6 117985335 117985420 -64429822 + L2 LINE L2 3208 3299 -14 2440 48 0 54 chr6 117985520 117985835 -64429407 - AluY SINE Alu -13 298 1 2345 73 7 3 chr6 117986382 117986682 -64428560 - AluY SINE Alu -10 301 1 2127 132 0 0 chr6 117986913 117987209 -64428033 + AluSx SINE Alu 1 296 -16 27 0 0 0 chr6 117987783 117987810 -64427432 + AT_rich Low_complexity Low_complexity 1 27 0 778 160 34 0 chr6 117987810 117987929 -64427313 - FLAM_A SINE Alu -10 123 1 25 0 0 0 chr6 117987935 117987960 -64427282 + AT_rich Low_complexity Low_complexity 1 25 0 2159 100 34 7 chr6 117989439 117989730 -64425512 + AluSg SINE Alu 1 299 -11 500 219 59 37 chr6 117990016 117990203 -64425039 - L1MC5 LINE L1 -424 7537 7347 1752 155 6 50 chr6 117990689 117991011 -64424231 - AluJo SINE Alu -4 308 1 2013 202 64 119 chr6 117991062 117991897 -64423345 - L1MC5 LINE L1 -597 7364 6560 2376 58 24 0 chr6 117991897 117992191 -64423051 - AluY SINE Alu -10 301 1 2013 202 64 119 chr6 117992191 117992272 -64422970 - L1MC5 LINE L1 -1401 6560 6476 797 169 0 0 chr6 117992499 117992617 -64422625 - FLAM_A SINE Alu -15 118 1 899 269 91 14 chr6 117992658 117993096 -64422146 - HAL1b LINE L1 -639 709 238 23 0 0 0 chr6 117993220 117993243 -64421999 + AT_rich Low_complexity Low_complexity 1 23 0 1965 159 22 6 chr6 117993502 117993860 -64421382 + L1MA2 LINE L1 3613 3976 -2170 2243 129 51 28 chr6 117993876 117993939 -64421303 + L1MA2 LINE L1 4133 4193 -1953 2282 96 0 16 chr6 117993939 117994242 -64421000 + AluSx SINE Alu 1 298 -14 2243 129 51 28 chr6 117994242 117994649 -64420593 + L1MA2 LINE L1 4193 4614 -1532 755 204 17 33 chr6 117994662 117994843 -64420399 + MER66B-int LTR ERV1 293 470 -6206 11934 113 14 3 chr6 117994843 117996605 -64418637 + MER66B-int LTR ERV1 4895 6676 0 1599 157 71 50 chr6 117996605 117996943 -64418299 + MER66B LTR ERV1 1 345 -141 7121 104 56 4 chr6 117997011 117997537 -64417705 + L1MA2 LINE L1 4601 5098 -1206 2167 121 0 0 chr6 117997537 117997841 -64417401 + AluSg SINE Alu 1 304 0 7121 104 56 4 chr6 117997841 117998915 -64416327 + L1MA2 LINE L1 5098 6303 -1 1631 118 5 0 chr6 117999137 117999357 -64415885 - AluJb SINE Alu -5 307 87 11935 109 29 24 chr6 117999400 118000860 -64414382 - Tigger2 DNA MER2_type 0 2718 1266 2436 89 0 3 chr6 118000860 118001162 -64414080 - AluSx SINE Alu -11 301 1 11935 109 29 24 chr6 118001162 118001545 -64413697 - Tigger2 DNA MER2_type -1452 1266 863 1797 194 3 10 chr6 118001545 118001855 -64413387 + AluJo SINE Alu 1 308 -4 11935 109 29 24 chr6 118001855 118001922 -64413320 - Tigger2 DNA MER2_type -1855 863 798 648 160 0 0 chr6 118001949 118002043 -64413199 + FLAM_A SINE Alu 24 117 -25 317 149 0 0 chr6 118002083 118002130 -64413112 + MER8 DNA MER2_type 193 239 0 2236 169 61 16 chr6 118002253 118002679 -64412563 + MER65A LTR ERV1 1 445 0 2316 110 17 0 chr6 118003199 118003500 -64411742 - AluSx SINE Alu -6 306 1 290 265 8 51 chr6 118003562 118003679 -64411563 + L1ME LINE L1 5589 5700 -421 609 124 0 31 chr6 118004000 118004097 -64411145 + FLAM_A SINE Alu 43 136 -6 2360 109 0 0 chr6 118004099 118004401 -64410841 + AluSq SINE Alu 1 302 -11 2456 84 10 0 chr6 118004712 118005021 -64410221 + AluSx SINE Alu 1 312 0 432 242 242 17 chr6 118005985 118006163 -64409079 + MIR SINE MIR 11 228 -34 1614 121 60 57 chr6 118006415 118006542 -64408700 + AluJo SINE Alu 1 126 -186 2321 89 0 3 chr6 118006542 118006834 -64408408 - AluSg SINE Alu -19 291 1 1614 121 60 57 chr6 118006834 118006971 -64408271 + AluJo SINE Alu 126 266 -46 1660 166 21 28 chr6 118006976 118007260 -64407982 + AluJo SINE Alu 14 295 -17 2101 125 7 3 chr6 118007743 118008040 -64407202 + AluSx SINE Alu 1 298 -14 1017 249 58 108 chr6 118008549 118009047 -64406195 - L2 LINE L2 -5 3308 2836 3834 98 9 2 chr6 118009182 118009712 -64405530 + MER41A LTR ERV1 1 534 -20 492 239 84 36 chr6 118009777 118009944 -64405298 - MIR SINE MIR -71 191 17 2272 98 7 10 chr6 118010125 118010431 -64404811 + AluSx SINE Alu 1 305 -7 241 290 99 37 chr6 118010519 118010681 -64404561 + L1ME LINE L1 5713 5884 -237 23 33 0 0 chr6 118011298 118011328 -64403914 + AT_rich Low_complexity Low_complexity 1 30 0 1850 149 3 26 chr6 118012019 118012347 -64402895 - AluJb SINE Alu 0 312 1 1994 134 14 10 chr6 118012939 118013230 -64402012 + AluJb SINE Alu 13 304 -8 283 271 62 14 chr6 118014432 118014576 -64400666 + LTR67 LTR ERVL 406 556 -1 291 333 57 9 chr6 118014738 118014843 -64400399 - L2 LINE L2 -5 3267 3158 2438 79 3 0 chr6 118015091 118015383 -64399859 - AluSc SINE Alu -16 293 1 1055 223 113 28 chr6 118016255 118016655 -64398587 + LTR56 LTR ERV1 12 445 0 393 203 62 125 chr6 118017236 118017288 -64397954 - MER5A DNA MER1_type -68 121 67 839 163 16 0 chr6 118017288 118017417 -64397825 - FLAM_C SINE Alu -2 131 1 393 203 62 125 chr6 118017417 118017492 -64397750 - MER5A DNA MER1_type -122 67 2 2466 90 0 0 chr6 118017713 118018014 -64397228 - AluSx SINE Alu -11 301 1 672 171 9 0 chr6 118018787 118018898 -64396344 - MER81 DNA DNA 0 114 3 875 167 0 0 chr6 118018932 118019064 -64396178 + FLAM_C SINE Alu 2 133 0 249 57 0 0 chr6 118019075 118019110 -64396132 + (TG)n Simple_repeat Simple_repeat 2 36 0 325 222 71 0 chr6 118019488 118019587 -64395655 - MER117 DNA MER1_type -91 106 1 2308 114 0 0 chr6 118019954 118020253 -64394989 - AluSc SINE Alu -10 299 1 195 42 0 0 chr6 118020266 118020290 -64394952 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 2128 134 0 0 chr6 118020300 118020592 -64394650 + AluJb SINE Alu 1 292 -20 251 253 71 91 chr6 118021058 118021093 -64394149 + L2 LINE L2 3156 3190 -82 2153 112 0 11 chr6 118021093 118021419 -64393823 + AluSx SINE Alu 1 323 0 251 253 71 91 chr6 118021419 118021481 -64393761 + L2 LINE L2 3190 3252 -20 2418 86 0 46 chr6 118022201 118022527 -64392715 - AluSx SINE Alu -1 311 1 822 88 109 0 chr6 118022717 118022854 -64392388 - L1MA5A LINE L1 0 6297 6146 806 110 29 52 chr6 118022953 118023089 -64392153 + FLAM_C SINE Alu 1 133 0 763 216 62 35 chr6 118023218 118023245 -64391997 + MER58B DNA MER1_type 71 96 -2324 2378 94 7 0 chr6 118023245 118023544 -64391698 - AluSq SINE Alu -12 301 1 763 216 62 35 chr6 118023544 118023775 -64391467 + MER58B DNA MER1_type 96 336 -5 2045 87 66 3 chr6 118024003 118024289 -64390953 - AluSg SINE Alu -1 309 6 29 28 0 0 chr6 118025403 118025439 -64389803 + GC_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr6 118025698 118025733 -64389509 + GC_rich Low_complexity Low_complexity 1 35 0 345 248 104 32 chr6 118031141 118031266 -64383976 - L2 LINE L2 0 3313 3180 243 0 8 0 chr6 118032755 118032818 -64382424 + (CA)n Simple_repeat Simple_repeat 2 27 0 347 231 77 43 chr6 118035305 118035422 -64379820 - MIR3 SINE MIR -84 124 4 294 333 75 8 chr6 118035488 118035608 -64379634 + MIR SINE MIR 117 244 -18 533 195 0 57 chr6 118035612 118035735 -64379507 - L2 LINE L2 -1 3312 3197 2510 76 3 0 chr6 118035811 118036112 -64379130 - AluSq SINE Alu -11 302 1 279 269 62 77 chr6 118037393 118037523 -64377719 - MIR SINE MIR -61 201 74 2279 101 0 10 chr6 118037538 118037835 -64377407 + AluSx SINE Alu 6 299 -13 222 261 46 0 chr6 118038104 118038169 -64377073 - MIR3 SINE MIR -20 188 121 219 88 0 0 chr6 118040434 118040468 -64374774 + (CGGGGG)n Simple_repeat Simple_repeat 6 39 0 23 0 0 0 chr6 118040553 118040576 -64374666 + GC_rich Low_complexity Low_complexity 1 23 0 256 167 188 31 chr6 118041454 118041550 -64373692 - MIR SINE MIR -118 144 34 221 365 61 17 chr6 118042539 118042720 -64372522 + MIR3 SINE MIR 16 204 -4 2281 91 7 3 chr6 118042973 118043270 -64371972 + AluSp SINE Alu 1 298 -15 228 262 66 66 chr6 118043601 118043784 -64371458 - L2 LINE L2 -236 3036 2854 189 307 34 0 chr6 118044041 118044129 -64371113 - L2 LINE L2 -737 2577 2487 1526 167 116 14 chr6 118044832 118045108 -64370134 + AluJo SINE Alu 1 304 -8 252 0 0 0 chr6 118045183 118045211 -64370031 + (CA)n Simple_repeat Simple_repeat 2 29 0 3014 52 10 16 chr6 118045622 118046005 -64369237 - L1PA6 LINE L1 -5 6149 5769 843 120 0 32 chr6 118046127 118046252 -64368990 + AluJo SINE Alu 11 131 -181 27 62 0 0 chr6 118046381 118046429 -64368813 + AT_rich Low_complexity Low_complexity 1 48 0 418 266 65 7 chr6 118046496 118046635 -64368607 + MIR SINE MIR 46 192 -70 1242 160 259 13 chr6 118046697 118047010 -64368232 + MLT1B LTR MaLR 1 390 0 2342 80 3 0 chr6 118047655 118047943 -64367299 - AluSg SINE Alu -20 290 2 525 190 60 0 chr6 118048102 118048218 -64367024 + Charlie5 DNA MER1_type 5 127 -2485 * 1548 148 85 19 chr6 118048205 118048569 -64366673 + Charlie5 DNA MER1_type 2228 2615 0 1036 182 0 0 chr6 118049312 118049477 -64365765 + AluJo SINE Alu 130 294 -18 1493 134 123 25 chr6 118051900 118052176 -64363066 + AluSx SINE Alu 1 303 -9 227 27 0 54 chr6 118052399 118052436 -64362806 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 663 268 136 3 chr6 118052807 118053094 -64362148 + L2 LINE L2 2521 2845 -469 254 288 205 31 chr6 118053121 118053409 -64361833 + L2 LINE L2 2971 3308 -5 186 43 0 0 chr6 118053584 118053607 -64361635 + (A)n Simple_repeat Simple_repeat 1 23 0 228 236 86 36 chr6 118055356 118055496 -64359746 - HAL1b LINE L1 0 1348 1202 333 285 45 31 chr6 118055585 118055831 -64359411 - L1ME LINE L1 -324 5797 5490 768 244 249 9 chr6 118057331 118057777 -64357465 + L2 LINE L2 2257 2809 -505 389 250 62 8 chr6 118057803 118057931 -64357311 + MER5B DNA MER1_type 39 173 -5 775 250 60 71 chr6 118057958 118058394 -64356848 + L2 LINE L2 2874 3304 -9 1857 115 23 33 chr6 118058460 118058764 -64356478 + AluSx SINE Alu 1 301 -11 2439 74 0 10 chr6 118059110 118059409 -64355833 + AluSc SINE Alu 1 296 -13 1733 176 10 23 chr6 118059417 118059723 -64355519 + AluJo SINE Alu 2 303 -9 1484 241 164 32 chr6 118061625 118061796 -64353446 + HAL1 LINE L1 26 173 -2334 1843 147 0 48 chr6 118061796 118062110 -64353132 - AluJo SINE Alu -13 299 1 1484 241 164 32 chr6 118062110 118062536 -64352706 + HAL1 LINE L1 173 702 -1805 3040 82 25 2 chr6 118062597 118063174 -64352068 + PABL_A LTR ERV1 25 660 0 1093 95 0 0 chr6 118063206 118063343 -64351899 + AluSp SINE Alu 129 265 -48 729 252 244 25 chr6 118063363 118063875 -64351367 + HAL1 LINE L1 770 1393 -1114 379 193 60 0 chr6 118063899 118063982 -64351260 - Tigger5 DNA MER2_type 0 2323 2236 818 207 67 0 chr6 118064041 118064191 -64351051 - Tigger5 DNA MER2_type -2163 160 1 2604 62 0 3 chr6 118064294 118064602 -64350640 + AluSg SINE Alu 1 307 -3 508 231 136 0 chr6 118064680 118064827 -64350415 + MER5B DNA MER1_type 10 176 -2 1328 121 24 10 chr6 118064995 118065201 -64350041 - MER3 DNA MER1_type 0 209 1 442 219 67 0 chr6 118065392 118065497 -64349745 + MIR SINE MIR 28 139 -123 300 325 49 0 chr6 118065554 118065677 -64349565 + MIR SINE MIR 134 262 0 1335 108 69 5 chr6 118066858 118067062 -64348180 + AluJb SINE Alu 3 219 -93 207 254 0 18 chr6 118067293 118067348 -64347894 + (TCGGG)n Simple_repeat Simple_repeat 3 56 0 236 97 0 132 chr6 118067434 118067578 -64347664 + (CGGGG)n Simple_repeat Simple_repeat 3 127 0 237 132 0 0 chr6 118067808 118067846 -64347396 + (CAT)n Simple_repeat Simple_repeat 3 40 0 365 252 49 28 chr6 118067973 118068116 -64347126 + MIR SINE MIR 81 226 -36 212 297 51 22 chr6 118068277 118068415 -64346827 + L2 LINE L2 2721 2862 -452 981 240 199 23 chr6 118069021 118069413 -64345829 - L2 LINE L2 0 3313 2853 279 156 0 0 chr6 118069426 118069471 -64345771 + MER53 DNA DNA 1 45 -144 296 132 57 19 chr6 118069481 118069534 -64345708 - Alu SINE Alu -245 55 1 2998 121 38 2 chr6 118069543 118069718 -64345524 + Tigger3(Golem) DNA MER2_type 2565 2732 -296 1570 208 0 23 chr6 118069718 118070026 -64345216 - AluJb SINE Alu -1 311 11 2998 121 38 2 chr6 118070026 118070298 -64344944 + Tigger3(Golem) DNA MER2_type 2732 3028 0 304 319 0 0 chr6 118070299 118070390 -64344852 + HAL1 LINE L1 1469 1559 -948 192 77 0 0 chr6 118070554 118070580 -64344662 + (A)n Simple_repeat Simple_repeat 1 26 0 2121 103 46 13 chr6 118070866 118071168 -64344074 + AluSx SINE Alu 1 312 0 797 300 169 16 chr6 118071169 118071785 -64343457 - L2 LINE L2 -445 2869 2160 388 247 58 81 chr6 118071795 118071969 -64343273 + LTR33 LTR ERVL 8 177 -344 249 83 0 0 chr6 118072596 118072632 -64342610 + (A)n Simple_repeat Simple_repeat 1 36 0 2487 72 0 3 chr6 118072699 118073004 -64342238 - AluSg SINE Alu -6 304 1 31 20 0 20 chr6 118073228 118073257 -64341985 + AT_rich Low_complexity Low_complexity 1 30 -18 2605 64 0 0 chr6 118073257 118073568 -64341674 - AluY SINE Alu 0 311 1 31 20 0 20 chr6 118073568 118073587 -64341655 + AT_rich Low_complexity Low_complexity 30 48 0 1611 111 23 0 chr6 118073663 118073879 -64341363 + AluSg/x SINE Alu 76 296 -14 565 337 59 25 chr6 118073947 118074346 -64340896 + L1ME LINE L1 5255 5672 -449 747 121 121 0 chr6 118074378 118074494 -64340748 - AluJb SINE Alu -178 134 5 210 71 0 0 chr6 118074599 118074627 -64340615 + (A)n Simple_repeat Simple_repeat 1 28 0 201 147 0 0 chr6 118075290 118075324 -64339918 + (CA)n Simple_repeat Simple_repeat 2 35 0 202 313 108 0 chr6 118076457 118076540 -64338702 - MIR3 SINE MIR -40 168 77 24 67 0 0 chr6 118078688 118078733 -64336509 + AT_rich Low_complexity Low_complexity 1 45 0 240 313 139 43 chr6 118080379 118080660 -64334582 + L2 LINE L2 1856 2163 -1151 333 0 0 0 chr6 118081262 118081299 -64333943 + (CA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chr6 118081298 118081321 -64333921 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 378 275 35 29 chr6 118082172 118082343 -64332899 + MIR3 SINE MIR 21 199 -9 21 0 0 0 chr6 118083239 118083260 -64331982 + AT_rich Low_complexity Low_complexity 1 21 0 511 278 21 57 chr6 118083359 118083542 -64331700 - L1MC4a LINE L1 -107 6014 5836 2010 116 20 24 chr6 118083542 118083836 -64331406 - AluSx SINE Alu -19 293 1 511 278 21 57 chr6 118083836 118083962 -64331280 - L1MC4a LINE L1 -285 5836 5707 351 0 0 0 chr6 118083970 118084009 -64331233 + (CA)n Simple_repeat Simple_repeat 2 40 0 867 231 59 36 chr6 118084592 118084671 -64330571 - MER46C DNA MER2_type -9 329 253 1753 147 41 0 chr6 118084671 118084937 -64330305 + AluJb SINE Alu 1 277 -35 180 0 0 0 chr6 118084937 118084957 -64330285 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 867 231 59 36 chr6 118084957 118085179 -64330063 - MER46C DNA MER2_type -84 254 20 705 206 31 12 chr6 118086011 118086166 -64329076 + MLT1E LTR MaLR 8 165 -428 445 167 71 0 chr6 118086166 118086250 -64328992 + MLT1C LTR MaLR 3 92 -375 1393 210 22 14 chr6 118086300 118086576 -64328666 + MLT1C LTR MaLR 187 464 -3 1375 214 151 24 chr6 118086619 118086890 -64328352 + MLT1E LTR MaLR 220 542 -51 303 28 0 0 chr6 118086890 118086926 -64328316 + (TG)n Simple_repeat Simple_repeat 2 37 0 1375 214 151 24 chr6 118086926 118086986 -64328256 + MLT1E LTR MaLR 542 593 0 313 261 31 15 chr6 118087055 118087185 -64328057 + (TTATA)n Simple_repeat Simple_repeat 2 133 0 736 334 191 62 chr6 118087646 118087981 -64327261 + LTR16A LTR ERVL 31 322 -128 896 112 19 136 chr6 118087981 118088008 -64327234 - MER53 DNA DNA 0 189 160 1738 171 0 32 chr6 118088008 118088317 -64326925 + AluJo SINE Alu 2 300 -12 896 112 19 136 chr6 118088317 118088462 -64326780 - MER53 DNA DNA -29 160 44 2060 120 10 3 chr6 118088462 118088754 -64326488 + AluSx SINE Alu 1 294 -18 896 112 19 136 chr6 118088754 118088794 -64326448 - MER53 DNA DNA -145 44 1 736 334 191 62 chr6 118088794 118088877 -64326365 + LTR16A LTR ERVL 322 450 0 1955 199 22 0 chr6 118089736 118090092 -64325150 - MLT1A1 LTR MaLR -1 364 1 296 323 31 0 chr6 118091153 118091249 -64323993 + MIR SINE MIR 151 249 -13 2892 85 51 2 chr6 118091660 118092071 -64323171 + MER57B LTR ERV1 1 431 -3 621 137 0 0 chr6 118093352 118093454 -64321788 - L1PA16 LINE L1 -22 6144 6043 5413 117 24 110 chr6 118093454 118094751 -64320491 + MER52C LTR ERV1 1 1278 0 190 307 13 40 chr6 118095397 118095472 -64319770 - MIR SINE MIR -96 112 40 4099 79 16 0 chr6 118095918 118096463 -64318779 + MER41A LTR ERV1 1 554 0 1857 170 0 3 chr6 118096813 118097095 -64318147 - AluJb SINE Alu -26 286 6 25 51 0 0 chr6 118097103 118097142 -64318100 + AT_rich Low_complexity Low_complexity 1 39 0 266 200 40 13 chr6 118097467 118097542 -64317700 - L1M4 LINE L1 -2667 3479 3403 2636 151 106 20 chr6 118097560 118098109 -64317133 + LTR26E LTR ERV1 7 602 -20 1426 179 59 64 chr6 118098732 118099123 -64316119 + MLT1B LTR MaLR 1 389 -1 1418 120 52 26 chr6 118100735 118101043 -64314199 - L1PBb LINE L1 -5137 1726 1411 578 249 16 0 chr6 118101039 118101232 -64314010 - L1PBb LINE L1 -6665 198 3 * 620 218 53 0 chr6 118101449 118101582 -64313660 + MIR SINE MIR 123 262 0 185 231 132 107 chr6 118101769 118101890 -64313352 + L2 LINE L2 2348 2471 -843 31 82 0 0 chr6 118102417 118102490 -64312752 + AT_rich Low_complexity Low_complexity 1 73 0 5362 172 25 21 chr6 118102752 118103448 -64311794 - L1PA16 LINE L1 -9 6157 5465 1466 166 94 22 chr6 118103448 118103725 -64311517 + AluJb SINE Alu 1 297 -15 5362 172 25 21 chr6 118103725 118105043 -64310199 - L1PA16 LINE L1 -701 5465 4138 1405 286 70 19 chr6 118105895 118106741 -64308501 - HAL1 LINE L1 -821 1686 798 283 214 125 0 chr6 118107016 118107128 -64308114 - L1M4 LINE L1 -1909 4237 4112 1600 258 82 26 chr6 118107445 118108188 -64307054 + L1ME LINE L1 589 1373 -5157 695 301 20 7 chr6 118108186 118108488 -64306754 + L1ME LINE L1 1319 1624 -4918 * 433 261 52 75 chr6 118108563 118108908 -64306334 + L1ME LINE L1 2100 2436 -4285 * 1449 148 61 0 chr6 118108906 118109184 -64306058 - L1PA15 LINE L1 -1094 5052 4758 5531 121 37 3 chr6 118109185 118110242 -64305000 + L1PA15 LINE L1 5078 6165 0 325 161 34 42 chr6 118110275 118110393 -64304849 + L1ME LINE L1 2384 2500 -4040 21 0 0 0 chr6 118111851 118111872 -64303370 + AT_rich Low_complexity Low_complexity 1 21 0 272 289 40 0 chr6 118111884 118111960 -64303282 - MIR SINE MIR -104 158 80 206 189 132 0 chr6 118111979 118112032 -64303210 - L2 LINE L2 -24 3289 3230 279 327 59 0 chr6 118112272 118112373 -64302869 + L2 LINE L2 3207 3313 0 1019 185 0 0 chr6 118112776 118112938 -64302304 + FRAM SINE Alu 1 162 -14 3463 137 11 8 chr6 118113385 118113909 -64301333 - MER1A DNA MER1_type -1 526 1 288 321 130 6 chr6 118114576 118114738 -64300504 - MIR SINE MIR -5 257 76 1555 98 0 0 chr6 118114784 118115005 -64300237 + AluSc SINE Alu 87 307 0 891 214 66 0 chr6 118115415 118115611 -64299631 - MER3 DNA MER1_type 0 209 1 530 302 151 11 chr6 118116113 118116378 -64298864 - L3 LINE CR1 -90 1487 1186 1436 195 15 9 chr6 118116388 118116721 -64298521 - L1ME1 LINE L1 -215 5951 5617 362 204 102 0 chr6 118117449 118117547 -64297695 + L1MA9 LINE L1 6181 6288 -24 23 68 0 0 chr6 118117701 118117745 -64297497 + AT_rich Low_complexity Low_complexity 1 44 0 463 72 0 0 chr6 118118112 118118181 -64297061 + AluSp/q SINE Alu 240 308 -5 317 43 21 0 chr6 118118214 118118261 -64296981 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 31 0 0 0 chr6 118118376 118118407 -64296835 + AT_rich Low_complexity Low_complexity 1 31 0 38591 63 2 19 chr6 118118540 118124773 -64290469 - L1PA5 LINE L1 -3 6151 24 362 281 112 17 chr6 118125222 118125400 -64289842 - L1ME4a LINE L1 0 6121 5927 2297 98 3 0 chr6 118125459 118125754 -64289488 - AluSp SINE Alu -17 296 1 536 298 33 0 chr6 118125822 118125973 -64289269 - MER5B DNA MER1_type -20 158 3 2247 122 3 8 chr6 118126267 118126644 -64288598 + L1MA4A LINE L1 5906 6280 -23 489 68 40 0 chr6 118126814 118126888 -64288354 - MADE1 DNA Mariner -2 78 2 2119 121 0 7 chr6 118127497 118127795 -64287447 - AluSx SINE Alu -16 296 1 1785 167 0 0 chr6 118128469 118128744 -64286498 + AluJb SINE Alu 23 297 -15 2913 115 14 7 chr6 118128946 118129371 -64285871 + MSTA LTR MaLR 1 428 0 1835 149 3 40 chr6 118129769 118129955 -64285287 + AluJo SINE Alu 2 172 -140 2200 112 53 31 chr6 118129955 118130311 -64284931 + THE1B LTR MaLR 1 364 0 1835 149 3 40 chr6 118130311 118130447 -64284795 + AluJo SINE Alu 172 312 0 303 309 50 80 chr6 118130864 118131126 -64284116 + L1M4 LINE L1 3812 4065 -2081 345 287 105 48 chr6 118131153 118131362 -64283880 - L2 LINE L2 -2598 716 496 2507 139 11 41 chr6 118132005 118132785 -64282457 + L1M1 LINE L1 4838 5607 -693 5900 118 12 12 chr6 118132786 118133737 -64281505 + HSMAR2 DNA Mariner 2 952 -350 2649 30 3 0 chr6 118134269 118134573 -64280669 - AluY SINE Alu -6 305 1 26 0 0 0 chr6 118135043 118135069 -64280173 + AT_rich Low_complexity Low_complexity 1 26 0 2237 97 3 3 chr6 118135845 118136143 -64279099 + AluSx SINE Alu 1 298 -14 24646 150 18 18 chr6 118136354 118139130 -64276112 - L1PA8A LINE L1 0 6446 3671 2267 129 0 0 chr6 118139130 118139441 -64275801 - AluSx SINE Alu -1 311 1 24646 150 18 18 chr6 118139441 118142253 -64272989 - L1PA8A LINE L1 -2775 3671 849 6691 213 34 31 chr6 118142251 118143477 -64271765 - L1ME LINE L1 -413 5822 4601 * 1676 166 46 3 chr6 118143477 118143761 -64271481 - AluSx SINE Alu -16 296 1 6691 213 34 31 chr6 118143761 118143777 -64271465 - L1ME LINE L1 -1634 4601 4587 2431 63 3 0 chr6 118143777 118144076 -64271166 - AluY SINE Alu -11 300 1 6691 213 34 31 chr6 118144076 118144359 -64270883 - L1ME LINE L1 -1648 4587 4306 1939 178 133 11 chr6 118144359 118144809 -64270433 - MLT1D LTR MaLR 0 505 1 6691 213 34 31 chr6 118144809 118145509 -64269733 - L1ME LINE L1 -1929 4306 3589 443 247 46 111 chr6 118145513 118145556 -64269686 - L1MDa LINE L1 -4579 1636 1592 2304 102 16 0 chr6 118145556 118145861 -64269381 - AluSg SINE Alu 0 310 1 443 247 46 111 chr6 118145861 118145923 -64269319 - L1MDa LINE L1 -4623 1592 1528 1928 136 7 0 chr6 118145923 118146223 -64269019 - AluJb SINE Alu 0 302 1 443 247 46 111 chr6 118146223 118146519 -64268723 - L1MDa LINE L1 -4687 1528 1242 429 203 101 51 chr6 118146535 118146693 -64268549 - MER46A DNA MER2_type -67 169 4 * 1170 193 38 0 chr6 118146560 118146773 -64268469 + MER46A DNA MER2_type 1 221 -15 1667 224 161 15 chr6 118146773 118147363 -64267879 - L1MDa LINE L1 -5162 1234 559 1696 169 14 10 chr6 118149805 118150095 -64265147 + AluJo SINE Alu 1 291 -21 222 255 0 0 chr6 118150377 118150424 -64264818 + (TA)n Simple_repeat Simple_repeat 2 48 0 892 116 0 0 chr6 118151245 118151374 -64263868 + L1PB3 LINE L1 5911 6039 -115 * 6017 64 2 0 chr6 118151372 118152173 -64263069 + L1PA5 LINE L1 2822 3624 -2522 2816 30 0 0 chr6 118152173 118152505 -64262737 + L1PA5 LINE L1 5823 6154 0 * 14040 56 1 4 chr6 118152504 118155055 -64260187 + L1PA5 LINE L1 3606 6154 0 778 148 0 15 chr6 118155056 118155191 -64260051 + L1PB3 LINE L1 6022 6154 0 362 299 95 23 chr6 118155577 118155798 -64259444 + HAL1b LINE L1 436 672 -676 250 275 28 18 chr6 118156114 118156223 -64259019 + L1ME4a LINE L1 5966 6075 -46 435 350 34 6 chr6 118156508 118156685 -64258557 - MER5A DNA MER1_type 0 189 8 298 179 36 0 chr6 118157203 118157259 -64257983 + MER45B DNA AcHobo 685 742 -298 1495 105 0 21 chr6 118157584 118157822 -64257420 + MER45B DNA AcHobo 764 996 -44 238 317 248 0 chr6 118158244 118158345 -64256897 - L2 LINE L2 -10 3262 3137 813 181 6 0 chr6 118158510 118158666 -64256576 + MER33 DNA MER1_type 1 143 -93 320 219 0 0 chr6 118158664 118158728 -64256514 + MER33 DNA MER1_type 298 361 -2 * 1115 143 6 0 chr6 118158823 118159006 -64256236 + AluSg/x SINE Alu 122 305 0 1299 166 61 14 chr6 118159009 118159287 -64255955 - Charlie4 DNA MER1_type -1668 293 3 9274 165 31 14 chr6 118159323 118161439 -64253803 - L1PB1 LINE L1 0 6151 3976 2350 97 0 0 chr6 118161439 118161739 -64253503 - AluY SINE Alu -11 300 1 9274 165 31 14 chr6 118161739 118162480 -64252762 - L1PB1 LINE L1 -2175 3976 3249 2146 113 30 10 chr6 118162480 118162843 -64252399 - AluSx SINE Alu 0 369 1 1096 82 0 0 chr6 118162843 118162978 -64252264 - AluSq/x SINE Alu -177 135 1 2715 218 24 27 chr6 118162978 118163681 -64251561 - L1PB1 LINE L1 -2843 3303 2603 287 240 87 10 chr6 118164541 118164645 -64250597 + L1ME4a LINE L1 5837 5948 -173 21 36 0 0 chr6 118165082 118165110 -64250132 + AT_rich Low_complexity Low_complexity 1 28 0 14239 125 60 17 chr6 118165456 118167776 -64247466 + Tigger1 DNA MER2_type 1 2418 0 754 159 106 0 chr6 118170875 118171007 -64244235 + FRAM SINE Alu 1 146 -30 408 171 26 0 chr6 118171108 118171184 -64244058 - MER5A DNA MER1_type -86 103 26 701 189 16 0 chr6 118171582 118171709 -64243533 - FLAM_A SINE Alu -1 132 4 13962 214 32 15 chr6 118171948 118171967 -64243275 - L1P5 LINE L1 -381 6478 6461 1581 188 36 9 chr6 118171967 118172297 -64242945 - L1PB4 LINE L1 0 6156 5818 13962 214 32 15 chr6 118172297 118172680 -64242562 - L1P5 LINE L1 -398 6461 6086 2554 34 3 0 chr6 118172680 118172974 -64242268 - AluY SINE Alu -16 295 1 13962 214 32 15 chr6 118172974 118176452 -64238790 - L1P5 LINE L1 -773 6086 2668 3577 103 4 6 chr6 118176452 118176966 -64238276 - MER75 DNA T2_type 0 514 2 13962 214 32 15 chr6 118176966 118177048 -64238194 - L1P5 LINE L1 -4191 2668 2589 2491 63 0 0 chr6 118177048 118177350 -64237892 - AluY SINE Alu -8 303 2 13962 214 32 15 chr6 118177350 118177902 -64237340 - L1P5 LINE L1 -4270 2589 1892 13628 95 10 2 chr6 118177902 118180621 -64234621 + L1PA7 LINE L1 3420 6154 0 24 0 0 0 chr6 118180621 118180645 -64234597 + AT_rich Low_complexity Low_complexity 1 24 0 2514 234 17 67 chr6 118180658 118181319 -64233923 - L1P5 LINE L1 -5312 1537 910 1414 58 16 0 chr6 118181321 118181510 -64233732 - L1P5 LINE L1 -371 5785 5594 505 245 65 105 chr6 118181509 118181958 -64233284 - L1ME4a LINE L1 -276 5845 5415 * 24 24 0 24 chr6 118181968 118181997 -64233245 + AT_rich Low_complexity Low_complexity 1 30 -11 2413 52 0 3 chr6 118181997 118182286 -64232956 + AluY SINE Alu 2 289 -22 24 24 0 24 chr6 118182286 118182298 -64232944 + AT_rich Low_complexity Low_complexity 30 41 0 1026 99 0 94 chr6 118182298 118182499 -64232743 - MER50 LTR ERV1 -54 680 499 21 0 0 0 chr6 118182670 118182691 -64232551 + AT_rich Low_complexity Low_complexity 1 21 0 7018 32 1 2 chr6 118182691 118183529 -64231713 - L1PA5 LINE L1 -13 6141 5305 42234 55 2 1 chr6 118183662 118189498 -64225744 - L1PA5 LINE L1 -303 5851 11 703 156 49 8 chr6 118190448 118190570 -64224672 + FLAM_A SINE Alu 1 127 -6 432 0 0 0 chr6 118191541 118191589 -64223653 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 21 36 0 0 chr6 118192219 118192247 -64222995 + AT_rich Low_complexity Low_complexity 1 28 0 988 204 56 53 chr6 118192418 118192588 -64222654 + L1M4 LINE L1 4343 4511 -1635 2026 148 3 42 chr6 118192588 118192945 -64222297 - MER2 DNA MER2_type -1 343 1 988 204 56 53 chr6 118192945 118193056 -64222186 + L1M4 LINE L1 4511 4628 -1518 333 0 0 0 chr6 118193056 118193093 -64222149 + (TG)n Simple_repeat Simple_repeat 1 37 0 988 204 56 53 chr6 118193093 118193168 -64222074 + L1M4 LINE L1 4628 4701 -1445 987 223 116 121 chr6 118193229 118193281 -64221961 + L1M4 LINE L1 4708 4759 -1387 2066 134 0 10 chr6 118193281 118193586 -64221656 + AluSx SINE Alu 1 302 -10 987 223 116 121 chr6 118193586 118194152 -64221090 + L1M4 LINE L1 4759 5323 -823 405 304 42 108 chr6 118194548 118194808 -64220434 + L2 LINE L2 3029 3271 -1 351 261 170 30 chr6 118196682 118196847 -64218395 + MLT1J LTR MaLR 1 188 -323 429 203 39 70 chr6 118196934 118197062 -64218180 + MLT1J LTR MaLR 226 349 -162 304 270 9 0 chr6 118198149 118198260 -64216982 + (TA)n Simple_repeat Simple_repeat 1 112 0 33 0 0 0 chr6 118198275 118198308 -64216934 + AT_rich Low_complexity Low_complexity 1 33 0 231 211 26 26 chr6 118198616 118198692 -64216550 + L1M LINE L1 5312 5387 -916 231 211 31 47 chr6 118198919 118199047 -64216195 + (TATAA)n Simple_repeat Simple_repeat 3 128 0 * 251 220 22 22 chr6 118198967 118199058 -64216184 + (TTATA)n Simple_repeat Simple_repeat 4 94 0 451 294 86 32 chr6 118199823 118200044 -64215198 + MIR SINE MIR 9 241 -21 780 309 104 6 chr6 118200378 118200695 -64214547 + L2 LINE L2 2966 3313 0 27 0 0 0 chr6 118200791 118200818 -64214424 + AT_rich Low_complexity Low_complexity 1 27 0 771 152 0 8 chr6 118201243 118201375 -64213867 + FLAM_C SINE Alu 3 133 0 228 271 62 31 chr6 118201412 118201508 -64213734 + L1P LINE L1 4143 4241 -1905 304 307 7 14 chr6 118201539 118201679 -64213563 + L1M4 LINE L1 3797 3935 -2211 1385 210 4 0 chr6 118201707 118201955 -64213287 - AluJo SINE Alu -54 258 10 542 306 80 11 chr6 118202043 118202570 -64212672 + L1M4 LINE L1 4085 4647 -1499 185 322 102 0 chr6 118202574 118202633 -64212609 + L2 LINE L2 3207 3271 -1 438 286 146 11 chr6 118203161 118203346 -64211896 + MIR SINE MIR 53 262 0 479 314 64 12 chr6 118203784 118203956 -64211286 + MIR3 SINE MIR 3 183 -25 198 355 172 0 chr6 118204232 118204325 -64210917 - L2 LINE L2 -3 3310 3202 210 158 18 35 chr6 118204732 118204789 -64210453 + (TA)n Simple_repeat Simple_repeat 2 57 0 503 196 28 0 chr6 118204840 118204947 -64210295 - L1ME2 LINE L1 -15 6149 6040 580 181 0 0 chr6 118204947 118205041 -64210201 + AluJ/FLAM SINE Alu 2 95 -217 2780 198 59 46 chr6 118205042 118205759 -64209483 - L1ME1 LINE L1 -121 6045 5320 359 152 7 60 chr6 118206027 118206178 -64209064 + (TA)n Simple_repeat Simple_repeat 2 144 0 7818 12 0 0 chr6 118206302 118207260 -64207982 + L1PA2 LINE L1 5266 6223 0 300 124 94 0 chr6 118207339 118207550 -64207692 + (TA)n Simple_repeat Simple_repeat 1 230 0 284 139 23 54 chr6 118207579 118207708 -64207534 + (TA)n Simple_repeat Simple_repeat 1 125 0 188 60 20 60 chr6 118207739 118207789 -64207453 + (TATAA)n Simple_repeat Simple_repeat 1 48 0 201 167 0 50 chr6 118207806 118207866 -64207376 + (TTATA)n Simple_repeat Simple_repeat 5 61 0 250 141 81 13 chr6 118207877 118208026 -64207216 + (TA)n Simple_repeat Simple_repeat 2 160 0 304 232 146 40 chr6 118208079 118208230 -64207012 - L1ME LINE L1 -446 5675 5509 322 291 82 58 chr6 118208243 118208449 -64206793 - L1ME LINE L1 -658 5504 5294 1950 210 159 16 chr6 118208489 118208985 -64206257 + MLT1F1 LTR MaLR 1 567 0 387 0 0 0 chr6 118209149 118209192 -64206050 + (CA)n Simple_repeat Simple_repeat 2 44 0 2740 235 97 65 chr6 118209198 118210406 -64204836 - HAL1 LINE L1 -295 2212 967 1177 256 92 40 chr6 118210508 118210718 -64204524 - L1ME LINE L1 -4594 1621 1423 1961 122 68 22 chr6 118210718 118211039 -64204203 + MER1B DNA MER1_type 2 337 0 1177 256 92 40 chr6 118211039 118211766 -64203476 - L1ME LINE L1 -4792 1423 666 6788 130 53 6 chr6 118211772 118212910 -64202332 - Tigger3b DNA MER2_type 0 1231 41 1806 151 42 0 chr6 118212947 118213231 -64202011 - AluSx SINE Alu -16 296 1 339 255 174 33 chr6 118213621 118213805 -64201437 - L1ME LINE L1 -6022 374 165 354 156 91 3 chr6 118214285 118214371 -64200871 - MLT1F1 LTR MaLR -5 553 412 204 40 0 0 chr6 118214385 118214410 -64200832 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 807 142 0 0 chr6 118214412 118214525 -64200717 - AluJb SINE Alu -194 118 6 2479 38 0 3 chr6 118214922 118215210 -64200032 - AluY SINE Alu -15 296 10 2198 252 96 48 chr6 118215450 118215846 -64199396 + L1ME3A LINE L1 4372 4747 -1423 1833 164 0 11 chr6 118215846 118216155 -64199087 + AluJo SINE Alu 1 306 0 2198 252 96 48 chr6 118216155 118217475 -64197767 + L1ME3A LINE L1 4747 6169 -1 337 289 94 19 chr6 118217584 118217743 -64197499 + L2 LINE L2 2422 2592 -722 1032 213 143 10 chr6 118217762 118218062 -64197180 - L2 LINE L2 -2541 773 434 417 54 0 0 chr6 118218150 118218206 -64197036 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1858 195 18 41 chr6 118219343 118219737 -64195505 + MSTD LTR MaLR 4 388 -8 908 249 43 112 chr6 118220317 118220879 -64194363 + HAL1 LINE L1 1 523 -1984 565 206 0 0 chr6 118221061 118221168 -64194074 - MER45A DNA AcHobo -14 164 58 356 325 96 25 chr6 118221236 118221433 -64193809 - MIR SINE MIR -45 217 7 231 180 0 20 chr6 118221606 118221656 -64193586 + MER5B DNA MER1_type 1 49 -129 4730 150 58 3 chr6 118221673 118222038 -64193204 - L1MB4 LINE L1 0 6180 5837 297 0 0 0 chr6 118222038 118222071 -64193171 + (CA)n Simple_repeat Simple_repeat 1 33 0 4730 150 58 3 chr6 118222071 118222660 -64192582 - L1MB4 LINE L1 -343 5837 5175 936 128 0 0 chr6 118222665 118222790 -64192452 - AluSq/x SINE Alu -188 125 1 398 248 119 9 chr6 118222883 118222992 -64192250 - MER5B DNA MER1_type -57 121 1 499 305 12 18 chr6 118223138 118223305 -64191937 - MER5A DNA MER1_type 0 189 24 1025 186 6 6 chr6 118223757 118223940 -64191302 - AluJb SINE Alu -1 311 129 7102 53 7 0 chr6 118223948 118225443 -64189799 - L1PA6 LINE L1 -8 6146 4647 2159 167 39 12 chr6 118225451 118225864 -64189378 - L1P LINE L1 -5721 425 2 755 107 18 0 chr6 118225866 118225978 -64189264 - FLAM_C SINE Alu -2 141 28 300 127 0 0 chr6 118226411 118226466 -64188776 + (TA)n Simple_repeat Simple_repeat 1 55 0 1480 148 69 69 chr6 118226467 118226757 -64188485 - AluJb SINE Alu -22 290 1 525 201 88 15 chr6 118226994 118227252 -64187990 - MLT1C LTR MaLR -122 345 1 1096 217 60 12 chr6 118227316 118227565 -64187677 + MLT1C LTR MaLR 201 461 -6 251 310 10 30 chr6 118227730 118227830 -64187412 + MLT1I LTR MaLR 64 161 -248 1408 274 115 33 chr6 118227903 118228537 -64186705 - L2 LINE L2 -749 2565 1880 868 339 45 62 chr6 118228604 118229445 -64185797 + L2 LINE L2 2430 3257 -15 779 138 6 85 chr6 118229488 118229683 -64185559 - L1ME LINE L1 -635 5527 5348 40757 61 7 7 chr6 118230378 118236524 -64178718 + L1PA4 LINE L1 11 6147 -8 8937 62 18 1 chr6 118236520 118237727 -64177515 + L1P LINE L1 2798 4025 -2121 * 235 281 39 34 chr6 118237747 118237925 -64177317 - L1ME LINE L1 -227 5894 5716 2077 119 14 0 chr6 118238219 118238513 -64176729 - AluSq SINE Alu -14 299 2 354 283 183 12 chr6 118238538 118238778 -64176464 - L1ME LINE L1 -530 5591 5311 25 31 0 0 chr6 118238897 118238929 -64176313 + AT_rich Low_complexity Low_complexity 1 32 0 836 109 0 88 chr6 118238984 118239121 -64176121 - AluJb SINE Alu -187 125 1 413 181 188 51 chr6 118239239 118239377 -64175865 + MER92B LTR ERV1 3 159 -477 287 172 109 0 chr6 118239428 118239492 -64175750 + MER92C LTR ERV1 484 554 0 2063 114 28 0 chr6 118239629 118239918 -64175324 - AluSx SINE Alu -15 297 1 252 259 12 59 chr6 118239918 118240003 -64175239 - L1ME LINE L1 -444 5677 5597 281 228 176 25 chr6 118240439 118240660 -64174582 - L1M1 LINE L1 -738 5565 5315 254 258 67 22 chr6 118241341 118241430 -64173812 + L2 LINE L2 3176 3268 -4 1300 239 35 81 chr6 118242494 118242837 -64172405 - L2 LINE L2 -1 3312 2990 1926 69 0 0 chr6 118242837 118243084 -64172158 - L1PA5 LINE L1 0 6154 5908 1300 239 35 81 chr6 118243084 118243162 -64172080 - L2 LINE L2 -323 2990 2910 461 271 82 14 chr6 118243298 118243505 -64171737 - L1ME LINE L1 -303 5818 5598 365 219 59 17 chr6 118243638 118243757 -64171485 - L2 LINE L2 -86 3227 3104 895 188 76 9 chr6 118243771 118243994 -64171248 + MER33 DNA MER1_type 5 242 -82 417 147 32 0 chr6 118243991 118244086 -64171156 + Charlie5 DNA MER1_type 2418 2515 -97 * 442 100 0 0 chr6 118244122 118244182 -64171060 + MSTC LTR MaLR 367 426 -2 211 241 0 69 chr6 118244204 118244262 -64170980 + L2 LINE L2 3255 3308 -5 274 147 0 53 chr6 118244515 118244590 -64170652 + (TTC)n Simple_repeat Simple_repeat 1 71 0 240 318 16 48 chr6 118245155 118245281 -64169961 - MIR3 SINE MIR -11 197 76 248 368 30 45 chr6 118245284 118245485 -64169757 - MIR SINE MIR -44 218 21 348 264 153 12 chr6 118245576 118245739 -64169503 - MER5A DNA MER1_type 0 189 4 631 195 97 7 chr6 118246033 118246187 -64169055 - MER5A DNA MER1_type -21 168 1 196 267 150 0 chr6 118247122 118247182 -64168060 - MIR SINE MIR -77 185 117 26 30 0 0 chr6 118247958 118247991 -64167251 + AT_rich Low_complexity Low_complexity 1 33 0 29 28 0 0 chr6 118248009 118248045 -64167197 + AT_rich Low_complexity Low_complexity 1 36 0 4249 166 65 4 chr6 118248653 118249571 -64165671 + Charlie1 DNA MER1_type 1787 2760 -1 2259 104 0 7 chr6 118249701 118250010 -64165232 - AluSc SINE Alu -2 307 1 1157 413 42 0 chr6 118250040 118250326 -64164916 + AluSg SINE Alu 1 298 -2 217 255 9 38 chr6 118252568 118252674 -64162568 + T-rich Low_complexity Low_complexity 3 105 0 12083 37 10 0 chr6 118252675 118254920 -64160322 - L1PA5 LINE L1 -3 6151 3890 1224 183 83 53 chr6 118255300 118255808 -64159434 + L1MC5 LINE L1 7395 7917 -44 232 274 28 0 chr6 118256184 118256290 -64158952 + (TA)n Simple_repeat Simple_repeat 2 110 0 1715 203 0 10 chr6 118257673 118257984 -64157258 + AluJo SINE Alu 4 311 -1 490 282 78 24 chr6 118258416 118258475 -64156767 - L1ME LINE L1 -463 5658 5604 210 37 0 0 chr6 118258475 118258502 -64156740 + (TG)n Simple_repeat Simple_repeat 2 28 0 490 282 78 24 chr6 118258502 118258769 -64156473 - L1ME LINE L1 -517 5604 5309 26 50 0 0 chr6 118258771 118258811 -64156431 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr6 118258851 118258875 -64156367 + AT_rich Low_complexity Low_complexity 1 24 0 35 0 0 40 chr6 118259105 118259122 -64156120 + AT_rich Low_complexity Low_complexity 1 17 -31 862 146 8 0 chr6 118259122 118259252 -64155990 + FLAM_C SINE Alu 1 131 -2 35 0 0 40 chr6 118259252 118259284 -64155958 + AT_rich Low_complexity Low_complexity 17 48 0 277 266 44 0 chr6 118259328 118259441 -64155801 + L1MC4 LINE L1 7924 8041 -1 822 105 16 0 chr6 118260595 118260719 -64154523 - L1P4 LINE L1 -359 5806 5681 24 0 0 0 chr6 118260851 118260875 -64154367 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr6 118261968 118262017 -64153225 + AT_rich Low_complexity Low_complexity 1 49 0 3140 114 23 2 chr6 118262052 118262525 -64152717 + L1PA15 LINE L1 5681 6163 -2 21 36 0 0 chr6 118262539 118262567 -64152675 + AT_rich Low_complexity Low_complexity 1 28 0 4378 152 70 10 chr6 118262981 118263887 -64151355 + L1MD1 LINE L1 5283 6242 0 30690 90 8 15 chr6 118263925 118267413 -64147829 + L1PA7 LINE L1 1 3512 -2957 2502 57 0 7 chr6 118267413 118267714 -64147528 + AluY SINE Alu 1 299 -12 30690 90 8 15 chr6 118267714 118269862 -64145380 + L1PA7 LINE L1 3512 5628 -841 2867 13 0 0 chr6 118269862 118270173 -64145069 + AluYa5 SINE Alu 1 311 0 30690 90 8 15 chr6 118270173 118271010 -64144232 + L1PA7 LINE L1 5628 6469 0 1852 321 100 22 chr6 118271136 118272459 -64142783 + ERVL LTR ERVL 2358 3826 -1854 739 325 37 59 chr6 118272494 118272578 -64142664 + ERVL LTR ERVL 3873 3957 -1697 2014 235 94 11 chr6 118272578 118273123 -64142119 + MLT1E LTR MaLR 1 590 -3 739 325 37 59 chr6 118273123 118273499 -64141743 + ERVL LTR ERVL 3957 4323 -1331 489 296 98 19 chr6 118273499 118274059 -64141183 + ERVL LTR ERVL 4242 4992 -772 225 204 0 0 chr6 118274114 118274158 -64141084 - 5S rRNA rRNA -77 44 1 301 333 70 28 chr6 118274182 118274395 -64140847 + ERVL LTR ERVL 5105 5326 -438 956 255 70 23 chr6 118274581 118274883 -64140359 + LTR16C LTR ERVL 1 316 -175 400 243 39 0 chr6 118274923 118275026 -64140216 + LTR16C LTR ERVL 385 491 0 344 289 148 0 chr6 118275059 118275201 -64140041 + Charlie8 DNA MER1_type 1916 2078 -339 180 152 0 0 chr6 118275535 118275568 -64139674 + L2 LINE L2 3277 3309 -4 273 174 58 0 chr6 118275875 118275944 -64139298 + MER69 DNA AcHobo 2379 2451 -75 1721 153 56 17 chr6 118277966 118278253 -64136989 - AluSg SINE Alu -12 298 1 303 301 35 35 chr6 118278327 118278470 -64136772 + L2 LINE L2 2702 2844 -470 225 0 0 0 chr6 118279168 118279193 -64136049 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 201 310 0 84 chr6 118279311 118279449 -64135793 - MIR SINE MIR -45 217 91 913 48 80 0 chr6 118279449 118279574 -64135668 + MER85 DNA T2_type 1 135 -4 5663 133 28 15 chr6 118279584 118280348 -64134894 + L1MA5 LINE L1 4866 5659 -641 8157 116 29 3 chr6 118280348 118280849 -64134393 - HSMAR2 DNA Mariner -1 1301 814 372 22 0 0 chr6 118280849 118280894 -64134348 + (CA)n Simple_repeat Simple_repeat 2 46 0 8157 116 29 3 chr6 118280894 118281658 -64133584 - HSMAR2 DNA Mariner -487 815 3 5663 133 28 15 chr6 118281658 118282304 -64132938 + L1MA5 LINE L1 5659 6295 -5 2054 69 0 0 chr6 118282312 118282557 -64132685 + AluY SINE Alu 63 307 -4 1973 225 31 14 chr6 118282564 118283008 -64132234 - MLT1F LTR MaLR -81 461 10 1047 224 42 30 chr6 118283039 118283159 -64132083 - L1M4 LINE L1 -1218 4928 4811 2294 97 0 3 chr6 118283159 118283457 -64131785 - AluSg SINE Alu -13 297 1 1047 224 42 30 chr6 118283457 118283697 -64131545 - L1M4 LINE L1 -1335 4811 4564 2648 251 72 34 chr6 118283730 118284760 -64130482 - L1M4 LINE L1 -1953 4193 3204 2315 105 0 3 chr6 118284760 118285073 -64130169 - AluSx SINE Alu 0 312 1 2648 251 72 34 chr6 118285073 118285099 -64130143 - L1M4 LINE L1 -2942 3204 3180 1484 179 137 27 chr6 118285099 118285428 -64129814 - MLT1A1 LTR MaLR 0 365 1 2648 251 72 34 chr6 118285428 118285517 -64129725 - L1M4 LINE L1 -2966 3180 3003 303 275 147 16 chr6 118285592 118285850 -64129392 + L1MC/D LINE L1 5257 5548 -2260 1831 127 29 17 chr6 118285854 118286233 -64129009 + Tigger4(Zombi) DNA MER2_type 2 2730 -1 1213 266 97 22 chr6 118288083 118288591 -64126651 - HAL1 LINE L1 -518 1989 1444 522 235 163 58 chr6 118288640 118288917 -64126325 - HAL1 LINE L1 -2201 306 1 649 296 234 12 chr6 118288949 118289513 -64125729 + L2 LINE L2 1851 2539 -775 204 314 23 35 chr6 118289509 118289595 -64125647 + L2 LINE L2 3186 3270 -2 * 2137 114 0 62 chr6 118289643 118289968 -64125274 + AluSx SINE Alu 1 305 -7 365 213 90 85 chr6 118289973 118290184 -64125058 + L1MC4 LINE L1 7554 7765 -277 437 268 7 7 chr6 118290205 118290343 -64124899 + L1MC4 LINE L1 7864 8001 -41 599 67 0 22 chr6 118291035 118291124 -64124118 + L1PA14 LINE L1 6075 6161 0 342 194 0 0 chr6 118292539 118292611 -64122631 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 230 125 54 0 chr6 118292615 118292671 -64122571 - L1MCa LINE L1 -4362 2064 2006 399 145 0 0 chr6 118292672 118292741 -64122501 + (TA)n Simple_repeat Simple_repeat 2 70 0 9501 135 21 6 chr6 118293262 118296262 -64118980 - L1PA13 LINE L1 -1 6813 3784 * 12253 176 48 10 chr6 118296261 118296387 -64118855 - L1PA13 LINE L1 -3540 3257 3137 2319 89 10 10 chr6 118296387 118296690 -64118552 + AluY SINE Alu 1 303 -8 12253 176 48 10 chr6 118296690 118299704 -64115538 - L1PA13 LINE L1 -3660 3137 1 2585 200 69 18 chr6 118302146 118302756 -64112486 + LTR65 LTR ERV1 8 648 -21 298 318 47 61 chr6 118302843 118303057 -64112185 - L2 LINE L2 -180 3092 2882 2285 125 49 42 chr6 118303210 118303635 -64111607 - MSTA LTR MaLR 0 428 1 2023 151 0 0 chr6 118304190 118304488 -64110754 - AluSx SINE Alu -14 298 1 1743 171 3 33 chr6 118304658 118304963 -64110279 - AluJo SINE Alu -16 296 1 455 263 17 0 chr6 118305944 118306062 -64109180 - MER5C DNA MER1_type -204 120 1 307 266 101 0 chr6 118307851 118307960 -64107282 - L1M4c LINE L1 -4738 2221 2102 2071 219 39 25 chr6 118307990 118308507 -64106735 - L1M4c LINE L1 -6326 533 10 242 292 77 54 chr6 118308921 118309089 -64106153 + MLT1K LTR MaLR 192 363 -225 261 0 0 0 chr6 118310073 118310102 -64105140 + (TG)n Simple_repeat Simple_repeat 2 30 0 752 150 78 7 chr6 118310119 118310272 -64104970 - L1MB2 LINE L1 -4 6167 6004 7466 80 1 8 chr6 118310361 118312172 -64103070 - L1PA8 LINE L1 -4 6168 4358 500 183 0 77 chr6 118312556 118312660 -64102582 - AluJb SINE Alu -18 294 199 1318 242 83 74 chr6 118312799 118313625 -64101617 + L1MC4 LINE L1 7203 8036 -6 881 315 54 15 chr6 118314350 118314886 -64100356 + L1ME LINE L1 3727 4292 -1854 1076 158 22 22 chr6 118314893 118315077 -64100165 + AluJb SINE Alu 129 312 0 402 286 62 70 chr6 118315144 118315322 -64099920 + L1ME LINE L1 4399 4577 -1569 2010 155 0 0 chr6 118315322 118315618 -64099624 - AluJo SINE Alu -16 296 1 402 286 62 70 chr6 118315618 118316008 -64099234 + L1ME LINE L1 4577 4962 -1184 405 309 119 43 chr6 118316257 118316743 -64098499 + L1ME LINE L1 5258 5780 -384 2016 138 29 21 chr6 118316751 118317091 -64098151 - MER2 DNA MER2_type -1 343 1 29 0 0 0 chr6 118318802 118318831 -64096411 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr6 118319412 118319444 -64095798 + AT_rich Low_complexity Low_complexity 1 32 0 363 183 0 39 chr6 118319617 118319770 -64095472 + (TA)n Simple_repeat Simple_repeat 2 148 0 242 250 213 29 chr6 118320972 118321108 -64094134 - MIR SINE MIR -24 238 78 1479 200 123 53 chr6 118321988 118322437 -64092805 - MLT1D LTR MaLR 0 505 26 453 268 106 0 chr6 118322563 118322705 -64092537 - MIR SINE MIR -50 212 56 438 288 124 52 chr6 118323026 118323259 -64091983 - MIR SINE MIR -1 261 12 299 346 125 17 chr6 118324209 118324449 -64090793 - L2 LINE L2 -449 2865 2600 25 51 0 0 chr6 118325002 118325041 -64090201 + AT_rich Low_complexity Low_complexity 1 39 0 619 283 46 8 chr6 118325243 118325480 -64089762 + MARNA DNA Mariner 193 438 -148 209 304 36 0 chr6 118325480 118325536 -64089706 + L2 LINE L2 3203 3260 -12 343 259 187 14 chr6 118325687 118325826 -64089416 - MIR SINE MIR -27 235 73 1873 129 161 13 chr6 118326022 118326395 -64088847 - MSTA LTR MaLR 0 428 1 1601 201 21 9 chr6 118326936 118327274 -64087968 + MER2 DNA MER2_type 1 342 -2 22 0 0 0 chr6 118328722 118328744 -64086498 + AT_rich Low_complexity Low_complexity 1 22 0 7190 47 11 5 chr6 118329917 118331101 -64084141 - L1PA7 LINE L1 -7 6147 4962 2805 82 18 0 chr6 118331101 118331502 -64083740 + L1PA7 LINE L1 4571 4978 -1168 2250 311 174 39 chr6 118331503 118332363 -64082879 - L2 LINE L2 -2 3270 2527 292 28 0 0 chr6 118332363 118332399 -64082843 - U2 snRNA snRNA -152 36 1 2250 311 174 39 chr6 118332399 118333063 -64082179 - L2 LINE L2 -745 2527 1954 869 218 0 0 chr6 118333063 118333219 -64082023 - FRAM SINE Alu -10 156 1 2250 311 174 39 chr6 118333219 118333877 -64081365 - L2 LINE L2 -1318 1954 720 2196 114 42 33 chr6 118333877 118334238 -64081004 - THE1B LTR MaLR 0 364 1 441 0 0 0 chr6 118334325 118334374 -64080868 + (TG)n Simple_repeat Simple_repeat 2 50 0 288 0 0 0 chr6 118334858 118334890 -64080352 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 1494 166 33 40 chr6 118335623 118335925 -64079317 + AluJo SINE Alu 1 300 -12 3439 94 0 0 chr6 118336565 118337084 -64078158 - L1P LINE L1 -2376 3770 3252 7619 32 2 0 chr6 118337107 118338438 -64076804 - L1PA3 LINE L1 0 6155 4824 735 11 0 0 chr6 118338438 118338525 -64076717 - 5S rRNA rRNA -34 87 1 29005 39 3 0 chr6 118338526 118342262 -64072980 - L1PA3 LINE L1 -1307 4839 1094 821 53 18 0 chr6 118342244 118342358 -64072884 - L1PA3 LINE L1 -6030 116 1 * 1018 109 23 0 chr6 118342357 118342532 -64072710 - L1P LINE L1 -2879 3267 3089 * 10776 80 16 2 chr6 118342526 118344561 -64070681 + L1PA7 LINE L1 3780 5837 -317 877 88 16 0 chr6 118344571 118344696 -64070546 + L1PA7 LINE L1 6027 6153 -1 643 234 14 14 chr6 118344720 118344865 -64070377 - MIR SINE MIR -70 192 48 2214 70 66 3 chr6 118545504 118545791 -63869451 - AluY SINE Alu -6 305 1 255 316 153 46 chr6 118546802 118546888 -63868354 + MIR SINE MIR 32 107 -155 2310 93 3 0 chr6 118546888 118547188 -63868054 - AluY SINE Alu -10 301 1 255 316 153 46 chr6 118547188 118547297 -63867945 + MIR SINE MIR 107 248 -14 457 125 12 12 chr6 118547507 118547587 -63867655 + MER20 DNA MER1_type 135 214 -5 2646 103 8 16 chr6 118549143 118549520 -63865722 - THE1C LTR MaLR -1 374 1 448 58 14 14 chr6 118549645 118549714 -63865528 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 1081 218 73 26 chr6 118549716 118550019 -63865223 + MLT2B1 LTR ERVL 5 321 -199 203 330 184 0 chr6 118550435 118550544 -63864698 - L2 LINE L2 -1 3271 3143 733 138 8 8 chr6 118551129 118551252 -63863990 - FLAM_A SINE Alu -7 135 13 23 0 0 0 chr6 118551569 118551592 -63863650 + AT_rich Low_complexity Low_complexity 1 23 0 559 279 72 5 chr6 118551835 118552057 -63863185 - MIR SINE MIR -14 248 12 2638 148 19 5 chr6 118552550 118552970 -63862272 + MSTB LTR MaLR 1 426 0 645 149 158 0 chr6 118553339 118553453 -63861789 + FLAM_C SINE Alu 2 133 0 21 57 0 0 chr6 118553453 118553488 -63861754 + AT_rich Low_complexity Low_complexity 1 35 0 2194 186 71 0 chr6 118554802 118555238 -63860004 - MLT1C LTR MaLR 0 467 1 503 246 14 28 chr6 118555711 118555853 -63859389 - MLT1H1 LTR MaLR -384 171 32 1372 158 173 12 chr6 118556203 118556224 -63859018 - MLT1B LTR MaLR 0 390 374 1251 199 31 86 chr6 118556224 118556543 -63858699 - MLT1A1 LTR MaLR 0 365 69 2015 156 0 0 chr6 118556543 118556845 -63858397 + AluSx SINE Alu 1 302 -10 1251 199 31 86 chr6 118556845 118556911 -63858331 - MLT1A1 LTR MaLR -296 69 1 1372 158 173 12 chr6 118556911 118557225 -63858017 - MLT1B LTR MaLR -16 374 1 351 257 30 0 chr6 118557411 118557512 -63857730 + MLT1F LTR MaLR 1 104 -491 * 869 206 0 0 chr6 118557511 118557666 -63857576 + MER45A DNA AcHobo 23 177 -1 477 321 33 37 chr6 118557666 118557867 -63857375 + MLT1F LTR MaLR 76 276 -307 585 196 8 55 chr6 118557926 118558123 -63857119 + MLT1F LTR MaLR 388 542 0 201 152 0 0 chr6 118558457 118558490 -63856752 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 57 0 19 chr6 118559074 118559109 -63856133 + AT_rich Low_complexity Low_complexity 1 36 -16 2022 146 17 0 chr6 118559109 118559411 -63855831 + AluSx SINE Alu 3 309 -3 21 57 0 19 chr6 118559411 118559428 -63855814 + AT_rich Low_complexity Low_complexity 36 52 0 25 0 0 0 chr6 118559909 118559934 -63855308 + AT_rich Low_complexity Low_complexity 1 25 0 206 128 26 0 chr6 118560908 118560947 -63854295 + (CA)n Simple_repeat Simple_repeat 1 40 0 222 289 93 10 chr6 118561219 118561316 -63853926 + L2 LINE L2 3137 3241 -31 842 184 56 20 chr6 118562099 118562295 -63852947 - MER3 DNA MER1_type -4 205 3 540 241 163 0 chr6 118562313 118562454 -63852788 - MER5A DNA MER1_type -24 165 2 225 350 134 6 chr6 118562742 118562899 -63852343 + MIR SINE MIR 86 262 0 254 308 26 0 chr6 118563195 118563273 -63851969 + L2 LINE L2 3231 3310 -3 233 258 0 11 chr6 118563275 118563364 -63851878 + (TGGA)n Simple_repeat Simple_repeat 1 88 0 297 0 0 0 chr6 118563543 118563576 -63851666 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 29 0 0 chr6 118563575 118563609 -63851633 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 * 37188 56 2 19 chr6 118563757 118568879 -63846363 + L1P LINE L1 24 5053 -1093 7514 30 1 0 chr6 118568979 118570226 -63845016 + L1PA4 LINE L1 4982 6222 0 1144 290 48 20 chr6 118570425 118570863 -63844379 + MLT1J LTR MaLR 3 452 -59 434 63 0 16 chr6 118570864 118570927 -63844315 + (TCC)n Simple_repeat Simple_repeat 2 63 0 1653 199 13 17 chr6 118570927 118571228 -63844014 - AluJo SINE Alu -11 301 2 747 145 43 102 chr6 118572013 118572199 -63843043 - MER69A DNA AcHobo -2 175 1 2433 138 36 14 chr6 118572688 118573101 -63842141 - MSTB LTR MaLR 0 426 5 458 259 26 0 chr6 118573121 118573237 -63842005 - MIR SINE MIR -48 214 96 326 298 48 19 chr6 118573279 118573383 -63841859 - MIR SINE MIR -136 126 20 183 42 0 0 chr6 118574662 118574686 -63840556 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2146 108 0 68 chr6 118575859 118576184 -63839058 - AluSx SINE Alu -9 303 1 1057 158 0 33 chr6 118576312 118576495 -63838747 - AluJb SINE Alu -4 308 132 5528 137 36 10 chr6 118577025 118578327 -63836915 - L1PB2 LINE L1 -3 6148 4816 5461 108 8 3 chr6 118578472 118579062 -63836180 + L1PB2 LINE L1 5276 5873 -278 2334 84 0 0 chr6 118579062 118579349 -63835893 - AluSx SINE Alu -15 297 11 5461 108 8 3 chr6 118579349 118579630 -63835612 + L1PB2 LINE L1 5873 6151 0 2016 143 13 0 chr6 118579762 118580062 -63835180 - AluJb SINE Alu -5 307 4 556 350 93 24 chr6 118580267 118580684 -63834558 + L2 LINE L2 2827 3272 0 1781 159 0 57 chr6 118581122 118581437 -63833805 + AluJo SINE Alu 6 302 -10 184 77 51 0 chr6 118581782 118581821 -63833421 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1591 181 4 0 chr6 118583899 118584164 -63831078 + AluJb SINE Alu 1 266 -46 195 337 23 35 chr6 118584299 118584385 -63830857 - L2 LINE L2 -4 3268 3184 363 274 5 23 chr6 118584596 118584809 -63830433 + L1ME4a LINE L1 5547 5855 -266 2534 154 21 5 chr6 118584958 118585379 -63829863 - MSTA LTR MaLR 0 428 1 437 304 10 20 chr6 118585452 118585656 -63829586 - L1MC4a LINE L1 -1908 5900 5699 420 242 99 62 chr6 118585668 118585805 -63829437 + L1ME4a LINE L1 5834 5965 -156 1726 189 19 16 chr6 118585805 118586112 -63829130 - AluJb SINE Alu -4 308 1 420 242 99 62 chr6 118586112 118586247 -63828995 + L1ME4a LINE L1 5965 6116 -5 2013 106 0 31 chr6 118586531 118586823 -63828419 + AluSg SINE Alu 12 294 -16 312 298 65 42 chr6 118587567 118587735 -63827507 - MIR SINE MIR -35 227 56 3142 156 12 60 chr6 118588878 118589543 -63825699 + L1MB2 LINE L1 5536 6168 -3 289 214 0 0 chr6 118589593 118589649 -63825593 + L2 LINE L2 3258 3313 0 339 288 38 50 chr6 118591313 118591473 -63823769 + MER5A DNA MER1_type 1 158 -31 2636 78 129 8 chr6 118591684 118592080 -63823162 + MLT2A1 LTR ERVL 1 444 0 194 0 0 37 chr6 118592236 118592263 -63822979 + (CAAAAA)n Simple_repeat Simple_repeat 1 26 0 449 263 0 0 chr6 118593274 118593369 -63821873 + MER5A DNA MER1_type 9 103 -86 315 284 50 60 chr6 118594199 118594400 -63820842 + L1MEd LINE L1 675 873 -5246 364 280 67 43 chr6 118594422 118594704 -63820538 + L1MEd LINE L1 861 1149 -4970 282 125 0 0 chr6 118594983 118595031 -63820211 - AluJb SINE Alu -12 290 243 1478 130 0 5 chr6 118595031 118595238 -63820004 - AluJb SINE Alu -106 206 1 3036 211 31 70 chr6 118595240 118596570 -63818672 - L1ME1 LINE L1 -59 6107 4832 2195 94 3 0 chr6 118596570 118596857 -63818385 - L1PA13 LINE L1 -11 6152 5865 3036 211 31 70 chr6 118596857 118597026 -63818216 - L1ME1 LINE L1 -1334 4832 4658 930 299 49 19 chr6 118597039 118597363 -63817879 - L1MC4a LINE L1 -1934 5874 5541 418 231 68 50 chr6 118597367 118597588 -63817654 - L1MC4a LINE L1 -2329 5479 5255 624 335 63 18 chr6 118597865 118598542 -63816700 - L1MC4a LINE L1 -1235 4911 4204 21 36 0 0 chr6 118598552 118598580 -63816662 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr6 118598596 118598621 -63816621 + AT_rich Low_complexity Low_complexity 1 25 0 987 133 57 23 chr6 118598669 118598890 -63816352 + L1MD1 LINE L1 5898 6223 -19 250 313 12 0 chr6 118598929 118599012 -63816230 - L1MC4a LINE L1 -2040 4106 4023 338 256 60 0 chr6 118599195 118599312 -63815930 + L1MC4 LINE L1 7919 8042 0 34 42 0 0 chr6 118599413 118599461 -63815781 + AT_rich Low_complexity Low_complexity 1 48 0 235 299 38 49 chr6 118599520 118599666 -63815576 + L1MDa LINE L1 2477 2624 -3916 320 328 0 0 chr6 118599802 118599936 -63815306 + L1MDa LINE L1 2664 2797 -3743 289 281 84 51 chr6 118599936 118600114 -63815128 - L1MC/D LINE L1 -2219 5589 5406 1245 127 4 107 chr6 118600119 118600372 -63814870 - AluJo SINE Alu 0 312 86 325 150 0 0 chr6 118600892 118600952 -63814290 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 408 308 41 26 chr6 118601009 118601204 -63814038 - MIR SINE MIR -17 245 48 22 0 0 0 chr6 118602233 118602255 -63812987 + AT_rich Low_complexity Low_complexity 1 22 0 375 185 19 9 chr6 118603034 118603142 -63812100 + GA-rich Low_complexity Low_complexity 3 111 0 319 238 16 0 chr6 118605203 118605266 -63809976 - MER2 DNA MER2_type 0 345 282 * 496 247 55 71 chr6 118605242 118605424 -63809818 - MER8 DNA MER2_type -60 179 1 2164 119 0 0 chr6 118605532 118605826 -63809416 - AluSx SINE Alu -14 298 5 1404 190 87 19 chr6 118605845 118606166 -63809076 - MER2 DNA MER2_type 0 344 2 197 294 47 12 chr6 118606236 118606321 -63808921 + L2 LINE L2 31 118 -3196 426 244 167 13 chr6 118606490 118606646 -63808596 + MLT1H LTR MaLR 85 264 -285 301 156 104 17 chr6 118606808 118606883 -63808359 + MLT1H LTR MaLR 478 549 0 2298 87 7 10 chr6 118607103 118607401 -63807841 + AluY SINE Alu 1 297 -14 525 253 0 0 chr6 118607621 118607767 -63807475 + (CATATA)n Simple_repeat Simple_repeat 1 146 0 241 219 21 83 chr6 118607770 118607866 -63807376 - L1MC4 LINE L1 -1339 6703 6614 13182 107 6 41 chr6 118608028 118610328 -63804914 + L1P3 LINE L1 6 2308 -4153 7136 61 25 2 chr6 118610330 118611493 -63803749 + L1PA7 LINE L1 4981 6163 0 22 35 0 0 chr6 118611493 118611522 -63803720 + AT_rich Low_complexity Low_complexity 1 29 0 199 286 10 61 chr6 118611922 118612020 -63803222 - MIR SINE MIR -149 113 21 227 343 0 15 chr6 118612106 118612173 -63803069 + L2 LINE L2 3149 3214 -58 400 351 32 13 chr6 118612319 118612473 -63802769 - L2 LINE L2 0 3272 3116 906 310 55 16 chr6 118612629 118612939 -63802303 - MLT1J LTR MaLR -189 322 1 519 296 162 0 chr6 118613266 118613408 -63801834 + MER91B DNA MER1_type 16 180 -10 2908 121 34 53 chr6 118613542 118614289 -63800953 + L1MB8 LINE L1 5347 6165 -13 563 227 47 21 chr6 118614614 118614631 -63800611 + MER106B DNA MER1_type 6 21 -1038 2403 118 39 14 chr6 118614631 118614986 -63800256 - THE1B LTR MaLR 0 364 1 563 227 47 21 chr6 118614986 118615027 -63800215 + MER106B DNA MER1_type 21 59 -1000 311 0 26 0 chr6 118615027 118615066 -63800176 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 563 227 47 21 chr6 118615066 118615190 -63800052 + MER106B DNA MER1_type 59 1017 -42 2215 100 0 57 chr6 118616607 118616959 -63798283 - AluSx SINE Alu 0 333 1 1350 139 4 20 chr6 118617004 118617248 -63797994 - L1MA4A LINE L1 -787 5359 5120 6104 115 13 13 chr6 118617248 118617927 -63797315 + L1MA4A LINE L1 5374 6055 -248 2956 83 16 3 chr6 118617927 118618299 -63796943 - MER51B LTR ERV1 0 377 1 6104 115 13 13 chr6 118618299 118618543 -63796699 + L1MA4A LINE L1 6054 6297 -6 193 176 0 0 chr6 118619032 118619066 -63796176 - L2 LINE L2 -14 3299 3266 1911 152 0 7 chr6 118619846 118620143 -63795099 + AluJb SINE Alu 1 295 -17 197 219 49 110 chr6 118621153 118621235 -63794007 - MIR SINE MIR -61 147 71 1971 143 32 19 chr6 118621780 118622088 -63793154 + AluJb SINE Alu 1 312 0 630 250 50 6 chr6 118622931 118623091 -63792151 + MER5A DNA MER1_type 1 167 -22 2224 101 9 22 chr6 118623532 118623848 -63791394 + AluSx SINE Alu 1 312 0 21 57 0 0 chr6 118624158 118624193 -63791049 + AT_rich Low_complexity Low_complexity 1 35 0 294 29 0 0 chr6 118624427 118624462 -63790780 + (TG)n Simple_repeat Simple_repeat 2 36 0 404 37 19 0 chr6 118624585 118624639 -63790603 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 279 187 33 77 chr6 118625178 118625269 -63789973 + L2 LINE L2 3227 3313 0 324 212 15 0 chr6 118625879 118625945 -63789297 + L2 LINE L2 3241 3307 -6 323 291 10 19 chr6 118625980 118626083 -63789159 - MIR3 SINE MIR -22 186 85 2179 110 0 0 chr6 118626121 118626403 -63788839 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr6 118626407 118626431 -63788811 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 524 162 192 0 chr6 118629554 118629653 -63785589 + MER45A DNA AcHobo 1 118 -60 351 122 0 0 chr6 118629665 118629714 -63785528 - MER66A LTR ERV1 -140 338 290 478 145 26 0 chr6 118629720 118629796 -63785446 + MER45A DNA AcHobo 100 177 -1 328 291 112 8 chr6 118629974 118630108 -63785134 - L2 LINE L2 -3 3269 3122 1312 212 9 0 chr6 118630425 118630647 -63784595 - MER58A DNA MER1_type 0 224 1 2457 168 111 18 chr6 118630730 118630792 -63784450 + MER39 LTR ERV1 1 56 -651 2035 180 21 9 chr6 118630792 118631131 -63784111 - MER61A LTR ERV1 0 343 1 2457 168 111 18 chr6 118631131 118631680 -63783562 + MER39 LTR ERV1 56 694 -13 639 253 40 17 chr6 118631718 118631892 -63783350 - LTR33 LTR ERVL -3 518 341 361 204 168 15 chr6 118631959 118632096 -63783146 - LTR33 LTR ERVL -351 170 13 340 306 27 0 chr6 118634981 118635120 -63780122 + L1ME LINE L1 329 473 -5923 1803 255 49 39 chr6 118635868 118636543 -63778699 + L1ME LINE L1 795 1447 -4959 1863 164 6 10 chr6 118636543 118636855 -63778387 + AluJb SINE Alu 1 311 -1 1803 255 49 39 chr6 118636855 118637006 -63778236 + L1ME LINE L1 1447 1595 -4811 1796 168 3 7 chr6 118637792 118638090 -63777152 + AluJo SINE Alu 1 297 -15 218 191 0 0 chr6 118638152 118638194 -63777048 + CT-rich Low_complexity Low_complexity 1 42 0 32 0 0 0 chr6 118638606 118638638 -63776604 + AT_rich Low_complexity Low_complexity 1 32 0 1830 112 82 4 chr6 118638641 118638908 -63776334 - AluSx SINE Alu -24 288 1 195 248 8 128 chr6 118639713 118639838 -63775404 - L2 LINE L2 -2835 479 370 735 106 8 98 chr6 118640738 118640870 -63774372 - FLAM_A SINE Alu 0 142 23 504 339 11 6 chr6 118640904 118641081 -63774161 - MIR3 SINE MIR -28 180 3 542 188 21 151 chr6 118641401 118641587 -63773655 + MLT1I LTR MaLR 248 409 0 2501 62 3 0 chr6 118641625 118641929 -63773313 + AluY SINE Alu 1 305 -6 5014 105 1 0 chr6 118641942 118642606 -63772636 + L1PA14 LINE L1 5497 6161 0 2145 133 0 3 chr6 118643381 118643674 -63771568 + AluSx SINE Alu 1 292 -20 3043 151 22 9 chr6 118647715 118648253 -63766989 - L1MB7 LINE L1 -22 6162 5618 236 265 0 0 chr6 118648531 118648599 -63766643 - MIR SINE MIR 0 262 195 1117 159 59 114 chr6 118649569 118649835 -63765407 - MER58D DNA MER1_type -2034 386 144 6184 106 11 7 chr6 118649835 118651115 -63764127 + L1PA14 LINE L1 4878 6161 0 1117 159 59 114 chr6 118651115 118651206 -63764036 - MER58D DNA MER1_type -2276 144 49 435 273 128 6 chr6 118651401 118651573 -63763669 - L2 LINE L2 -3 3310 3118 2267 113 0 10 chr6 118651671 118651971 -63763271 - AluSx SINE Alu -15 297 1 338 311 66 12 chr6 118652384 118652551 -63762691 + MIR SINE MIR 49 224 -38 25 0 0 0 chr6 118653157 118653182 -63762060 + AT_rich Low_complexity Low_complexity 1 25 0 340 298 60 7 chr6 118653290 118653441 -63761801 - MIR SINE MIR -12 250 92 923 303 65 26 chr6 118654317 118654700 -63760542 + MLT1I LTR MaLR 1 398 -11 885 268 296 0 chr6 118654964 118655390 -63759852 - LTR67 LTR ERVL -4 553 2 329 183 33 0 chr6 118655520 118655580 -63759662 + MLT1K LTR MaLR 527 588 0 842 204 224 12 chr6 118655810 118655926 -63759316 + AluYa5 SINE Alu 1 91 -210 537 16 0 0 chr6 118655926 118655988 -63759254 + (TAAAA)n Simple_repeat Simple_repeat 4 65 0 2136 82 0 4 chr6 118655993 118656261 -63758981 + AluSg SINE Alu 1 267 -43 842 204 224 12 chr6 118656261 118656383 -63758859 + AluYa5 SINE Alu 94 297 -4 28 48 0 0 chr6 118657102 118657144 -63758098 + AT_rich Low_complexity Low_complexity 1 42 0 195 42 0 0 chr6 118658711 118658735 -63756507 + (T)n Simple_repeat Simple_repeat 1 24 0 545 281 323 0 chr6 118660664 118661048 -63754194 + L2 LINE L2 2126 2633 -681 2290 110 3 0 chr6 118661328 118661637 -63753605 + AluSx SINE Alu 1 310 -2 29 90 0 0 chr6 118663124 118663202 -63752040 + GC_rich Low_complexity Low_complexity 1 78 0 226 202 40 48 chr6 118663235 118663359 -63751883 + (CGCGG)n Simple_repeat Simple_repeat 5 127 0 230 370 0 0 chr6 118664920 118665012 -63750230 + MIR SINE MIR 48 139 -123 1168 176 28 23 chr6 118666203 118666419 -63748823 + MER20 DNA MER1_type 3 219 0 2838 140 14 5 chr6 118666541 118666963 -63748279 - MSTB LTR MaLR 0 426 1 432 244 0 30 chr6 118667219 118667350 -63747892 + L1MC5 LINE L1 7734 7860 -101 422 245 59 0 chr6 118667429 118667531 -63747711 - L1ME LINE L1 -335 5786 5679 1289 242 219 8 chr6 118667531 118668023 -63747219 - L2 LINE L2 -810 2504 1909 684 200 0 21 chr6 118668029 118668174 -63747068 + L2 LINE L2 3172 3313 0 1757 158 0 31 chr6 118668592 118668913 -63746329 + AluJb SINE Alu 1 312 0 280 301 11 11 chr6 118670246 118670339 -63744903 - MER5A DNA MER1_type -4 185 93 330 167 0 0 chr6 118670640 118670700 -63744542 + CT-rich Low_complexity Low_complexity 1 60 0 372 155 25 174 chr6 118670865 118671026 -63744216 + MIR SINE MIR 96 232 -30 751 179 8 15 chr6 118671181 118671315 -63743927 + FLAM_A SINE Alu 1 133 0 180 261 0 62 chr6 118672585 118672650 -63742592 - L2 LINE L2 -542 2772 2712 193 152 0 0 chr6 118674252 118674285 -63740957 + MIR SINE MIR 156 188 -74 8710 115 16 8 chr6 118675096 118676387 -63738855 + HSMAR2 DNA Mariner 1 1302 0 1834 257 57 19 chr6 118676668 118677570 -63737672 + L2 LINE L2 2369 3309 -4 2441 57 3 13 chr6 118678087 118678386 -63736856 + AluY SINE Alu 1 296 -15 22 35 0 0 chr6 118678555 118678584 -63736658 + AT_rich Low_complexity Low_complexity 1 29 0 406 281 109 39 chr6 118678639 118679286 -63735956 - L1MC4a LINE L1 -75 6046 5255 326 302 19 0 chr6 118679298 118679404 -63735838 - L2 LINE L2 -2 3311 3204 259 300 9 36 chr6 118679620 118679730 -63735512 + L1MEd LINE L1 243 349 -5770 1124 271 68 80 chr6 118679828 118680827 -63734415 + L1MEd LINE L1 527 1623 -867 1609 86 176 16 chr6 118680979 118681234 -63734008 - AluSg SINE Alu -2 298 3 210 207 49 12 chr6 118681435 118681517 -63733725 + GA-rich Low_complexity Low_complexity 3 87 0 318 336 8 8 chr6 118681835 118681960 -63733282 + MER5B DNA MER1_type 25 149 -29 2380 122 28 22 chr6 118682199 118682560 -63732682 + THE1B LTR MaLR 1 363 -1 498 291 17 23 chr6 118682818 118682990 -63732252 - MER5B DNA MER1_type -3 175 5 380 192 5 201 chr6 118682997 118683216 -63732026 - MER5B DNA MER1_type -2 176 1 13287 150 6 26 chr6 118683450 118686985 -63728257 + L1PA8A LINE L1 8 3533 -2928 1492 40 0 0 chr6 118686985 118687161 -63728081 + L1PA4 LINE L1 5976 6152 -3 14581 111 27 6 chr6 118687188 118690066 -63725176 + L1PA8A LINE L1 3527 6446 0 1100 214 5 40 chr6 118690662 118690886 -63724356 + MER58A DNA MER1_type 9 224 0 2373 194 111 14 chr6 118691841 118692428 -63722814 - LTR48B LTR ERV1 0 644 1 656 294 36 17 chr6 118692474 118692861 -63722381 + MLT1J LTR MaLR 61 504 -7 2975 149 28 53 chr6 118694100 118694119 -63721123 - MER89 LTR ERV1 -4 555 537 2990 155 59 0 chr6 118694119 118694610 -63720632 + MLT2B1 LTR ERVL 1 520 0 2975 149 28 53 chr6 118694610 118695155 -63720087 - MER89 LTR ERV1 -22 537 5 610 200 63 46 chr6 118695412 118695587 -63719655 - MER5B DNA MER1_type 0 178 1 24 32 0 0 chr6 118695902 118695933 -63719309 + AT_rich Low_complexity Low_complexity 1 31 0 1984 96 50 63 chr6 118696518 118696820 -63718422 - AluSx SINE Alu -14 298 1 412 261 35 0 chr6 118696872 118696987 -63718255 - MER103 DNA DNA -46 120 2 608 160 23 76 chr6 118697674 118697805 -63717437 - FLAM_A SINE Alu -9 124 1 791 129 10 119 chr6 118699132 118699275 -63715967 - L1MB3 LINE L1 0 6183 6067 2026 141 0 7 chr6 118699275 118699573 -63715669 - AluJb SINE Alu -16 296 1 791 129 10 119 chr6 118699573 118699630 -63715612 - L1MB3 LINE L1 -116 6067 6005 450 258 41 41 chr6 118699816 118700016 -63715226 + MIR SINE MIR 2 197 -59 206 330 53 11 chr6 118700079 118700173 -63715069 + L2 LINE L2 3159 3256 -16 1197 215 87 46 chr6 118700216 118700607 -63714635 + MLT2B1 LTR ERVL 5 309 -105 836 184 25 0 chr6 118701059 118701217 -63714025 + AluSg/x SINE Alu 141 302 -8 193 250 0 0 chr6 118701503 118701547 -63713695 - L2 LINE L2 -6 3307 3264 279 0 0 0 chr6 118701858 118701889 -63713353 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 483 302 39 11 chr6 118702195 118702374 -63712868 + MIR SINE MIR 65 248 -14 396 0 0 0 chr6 118703550 118703594 -63711648 + (CA)n Simple_repeat Simple_repeat 2 45 0 657 274 143 12 chr6 118706012 118706271 -63708971 + MER115 DNA AcHobo 56 348 -345 258 333 0 0 chr6 118706305 118706380 -63708862 + MER115 DNA AcHobo 469 543 -150 3394 185 103 59 chr6 118706594 118707549 -63707693 + L1MC4 LINE L1 6876 7884 -158 2167 89 22 0 chr6 118707549 118707819 -63707423 + AluSq SINE Alu 1 276 -37 3394 185 103 59 chr6 118707819 118707917 -63707325 + L1MC4 LINE L1 7884 7976 -66 940 237 129 105 chr6 118708137 118708425 -63706817 - Tigger8 DNA MER2_type -48 618 338 203 30 0 61 chr6 118708425 118708458 -63706784 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 940 237 129 105 chr6 118708458 118708759 -63706483 - Tigger8 DNA MER2_type -328 338 15 220 254 32 0 chr6 118709028 118709091 -63706151 + L2 LINE L2 3249 3313 0 1928 166 0 3 chr6 118710202 118710504 -63704738 - AluJb SINE Alu -11 301 1 1539 143 92 18 chr6 118710804 118711077 -63704165 + AluJb SINE Alu 2 294 -18 390 318 59 33 chr6 118711323 118711797 -63703445 + L2 LINE L2 2224 2764 -550 181 341 11 0 chr6 118711795 118711886 -63703356 + L2 LINE L2 2884 2975 -339 * 214 309 37 12 chr6 118712208 118712289 -63702953 + L2 LINE L2 3231 3313 0 252 242 61 0 chr6 118712407 118712473 -63702769 - MARNA DNA Mariner -331 255 186 602 178 0 0 chr6 118715141 118715248 -63699994 - MIR SINE MIR 0 262 156 2668 86 5 34 chr6 118715593 118715979 -63699263 - THE1C LTR MaLR 0 375 1 2327 241 67 40 chr6 118716089 118716899 -63698343 + HAL1 LINE L1 426 1257 -1250 230 75 0 25 chr6 118716919 118716959 -63698283 + HAL1 LINE L1 2469 2507 0 1700 127 0 32 chr6 118717183 118717435 -63697807 + AluSg SINE Alu 52 295 -15 869 294 52 28 chr6 118717611 118717999 -63697243 + MLT1I LTR MaLR 5 401 -8 1743 185 26 0 chr6 118718035 118718338 -63696904 + AluJb SINE Alu 1 311 -1 2178 119 0 0 chr6 118718944 118719238 -63696004 - AluSg SINE Alu -16 294 1 3511 149 6 2 chr6 118721155 118721680 -63693562 - MER1A DNA MER1_type 0 527 1 440 258 48 32 chr6 118721849 118722014 -63693228 - MIR SINE MIR -59 203 33 2420 88 0 0 chr6 118722014 118722319 -63692923 - AluY SINE Alu -6 305 1 440 258 48 32 chr6 118722319 118722339 -63692903 - MIR SINE MIR -229 33 15 205 330 76 17 chr6 118722375 118722493 -63692749 + MIR SINE MIR 88 212 -50 4268 175 20 47 chr6 118722578 118723413 -63691829 - MER21B LTR ERV1 -50 813 1 601 219 50 135 chr6 118724542 118724802 -63690440 + LTR26B LTR ERV1 1 238 -293 445 151 12 35 chr6 118725242 118725328 -63689914 - MER69 DNA AcHobo 0 2526 2443 720 270 58 46 chr6 118725333 118725574 -63689668 - MER69 DNA AcHobo -2279 247 4 223 298 77 0 chr6 118725855 118725959 -63689283 - MIR SINE MIR -61 201 90 2047 135 36 7 chr6 118726365 118726668 -63688574 - AluSq SINE Alu -1 312 1 462 283 64 23 chr6 118726693 118727039 -63688203 + L1M4 LINE L1 4267 4626 -1520 433 216 93 14 chr6 118727155 118727294 -63687948 + LTR33A LTR ERVL 374 523 0 1405 177 13 88 chr6 118727322 118727695 -63687547 + MLT1A2 LTR MaLR 30 374 0 1621 199 47 33 chr6 118727721 118728082 -63687160 + MLT1B LTR MaLR 23 388 -2 1641 164 33 49 chr6 118728111 118728416 -63686826 + AluJb SINE Alu 2 301 -11 1167 36 0 0 chr6 118729600 118729737 -63685505 + AluYa5/8 SINE Alu 175 311 0 180 165 212 24 chr6 118730647 118730732 -63684510 + L2 LINE L2 3172 3272 0 2136 119 3 3 chr6 118731834 118732127 -63683115 + AluSq SINE Alu 1 293 -20 1984 162 13 0 chr6 118732136 118732444 -63682798 + AluSx SINE Alu 1 312 0 784 250 57 0 chr6 118732491 118732703 -63682539 + MIR SINE MIR 39 262 0 1241 93 126 0 chr6 118732758 118732941 -63682301 - AluSg SINE Alu -104 206 1 248 341 98 0 chr6 118733075 118733198 -63682044 + L2 LINE L2 3138 3272 0 504 256 25 0 chr6 118733635 118733756 -63681486 + MIR SINE MIR 45 168 -94 2126 124 0 13 chr6 118733800 118734107 -63681135 + AluSx SINE Alu 1 303 -9 1789 179 52 0 chr6 118736546 118736875 -63678367 + MER7A DNA MER2_type 3 346 0 237 231 0 0 chr6 118737608 118737660 -63677582 - L2 LINE L2 0 3313 3262 187 358 28 18 chr6 118738118 118738227 -63677015 + MIR SINE MIR 34 143 -119 285 109 0 0 chr6 118738440 118738486 -63676756 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 2275 107 7 0 chr6 118739125 118739423 -63675819 + AluSx SINE Alu 1 300 -12 202 258 45 0 chr6 118739471 118739537 -63675705 + MIR SINE MIR 77 145 -117 269 240 60 93 chr6 118739825 118739864 -63675378 - MER5A DNA MER1_type -26 163 124 2376 98 0 0 chr6 118739864 118740161 -63675081 + AluSg SINE Alu 1 297 -13 269 240 60 93 chr6 118740161 118740271 -63674971 - MER5A DNA MER1_type -65 124 19 2104 170 16 10 chr6 118740309 118740697 -63674545 + MLT1B LTR MaLR 1 390 0 1785 184 0 3 chr6 118741509 118741792 -63673450 + AluJo SINE Alu 1 282 -30 739 284 32 61 chr6 118742001 118742311 -63672931 + MLT1J1 LTR MaLR 141 441 -5 21 57 0 0 chr6 118742317 118742352 -63672890 + AT_rich Low_complexity Low_complexity 1 35 0 361 226 47 38 chr6 118743156 118743262 -63671980 + L2 LINE L2 2971 3077 -236 251 231 0 0 chr6 118743319 118743371 -63671871 + L2 LINE L2 3221 3272 0 451 167 61 61 chr6 118743440 118743489 -63671753 + L1ME4a LINE L1 5990 6038 -83 958 186 0 12 chr6 118743489 118743656 -63671586 - FRAM SINE Alu 0 166 2 451 167 61 61 chr6 118743656 118743738 -63671504 + L1ME4a LINE L1 6037 6121 0 1747 125 0 0 chr6 118745238 118745470 -63669772 - 7SLRNA srpRNA srpRNA -88 232 1 8675 113 15 12 chr6 118745635 118745662 -63669580 + HSMAR2 DNA Mariner 1 26 -1276 2191 120 3 0 chr6 118745662 118745954 -63669288 + AluSx SINE Alu 1 293 -19 8675 113 15 12 chr6 118745954 118747223 -63668019 + HSMAR2 DNA Mariner 26 1301 -1 1904 174 68 14 chr6 118748393 118749310 -63665932 + L1MB3 LINE L1 5134 6174 -9 252 338 199 0 chr6 118750274 118750475 -63664767 + L2 LINE L2 2737 2977 -337 277 235 44 0 chr6 118750992 118751060 -63664182 - L3b LINE CR1 -262 1321 1251 195 288 109 71 chr6 118751427 118751611 -63663631 - MIR SINE MIR -26 236 46 5279 155 19 7 chr6 118752652 118753616 -63661626 - L1MB7 LINE L1 -9 6175 5198 181 348 213 13 chr6 118753843 118754453 -63660789 + L2 LINE L2 1330 2061 -1253 208 293 191 45 chr6 118755070 118755227 -63660015 + L2 LINE L2 2838 3017 -255 476 291 107 53 chr6 118755272 118755478 -63659764 + MIR SINE MIR 46 262 0 2280 114 0 0 chr6 118755496 118755802 -63659440 + AluSx SINE Alu 1 306 -6 232 305 56 51 chr6 118755897 118756094 -63659148 - L1ME3A LINE L1 -8 6145 5948 966 284 63 54 chr6 118756171 118757194 -63658048 - L1ME3A LINE L1 -208 5945 4870 754 224 140 106 chr6 118757361 118757719 -63657523 - L1ME3A LINE L1 -1712 4417 4030 907 140 0 29 chr6 118757719 118757855 -63657387 + FLAM_A SINE Alu 1 132 -1 754 224 140 106 chr6 118757855 118758081 -63657161 - L1ME3A LINE L1 -2099 4030 3813 502 287 54 64 chr6 118758095 118758576 -63656666 - L1ME3A LINE L1 -5009 1110 635 1485 240 57 34 chr6 118758597 118758896 -63656346 - LTR40c LTR ERVL -13 452 138 3240 129 11 2 chr6 118758896 118759345 -63655897 - MSTB2 LTR MaLR -4 453 1 1485 240 57 34 chr6 118759345 118759487 -63655755 - LTR40c LTR ERVL -327 138 1 466 62 15 0 chr6 118759656 118759721 -63655521 + MER41B LTR ERV1 481 546 -89 657 87 78 2 chr6 118759722 118760256 -63654986 + (TA)n Simple_repeat Simple_repeat 1 574 0 206 308 56 47 chr6 118760590 118760697 -63654545 + L2 LINE L2 3122 3229 -43 23 78 0 0 chr6 118760778 118760829 -63654413 + AT_rich Low_complexity Low_complexity 1 51 0 1340 186 52 114 chr6 118760835 118761221 -63654021 + MLT1A1 LTR MaLR 2 363 -2 693 283 107 17 chr6 118761321 118761554 -63653688 - MIR SINE MIR 0 262 9 3498 177 136 108 chr6 118762262 118762623 -63652619 + L1MC3 LINE L1 6557 6907 -878 8258 80 4 6 chr6 118762623 118763632 -63651610 + LTR13 LTR ERVK 1 1007 0 3498 177 136 108 chr6 118763632 118763719 -63651523 + L1MC3 LINE L1 6907 6990 -795 2957 163 83 0 chr6 118763719 118764156 -63651086 + MLT2B1 LTR ERVL 1 483 -37 258 32 0 0 chr6 118764156 118764187 -63651055 + (TG)n Simple_repeat Simple_repeat 2 32 0 2957 163 83 0 chr6 118764187 118764229 -63651013 + MLT2B1 LTR ERVL 483 520 0 3498 177 136 108 chr6 118764229 118764321 -63650921 + L1MC3 LINE L1 6990 7078 -707 346 228 0 76 chr6 118764321 118764413 -63650829 + MLT1F1 LTR MaLR 35 119 -448 3498 177 136 108 chr6 118764413 118764975 -63650267 + L1MC3 LINE L1 7078 7785 0 598 211 23 0 chr6 118765388 118765516 -63649726 - Charlie1b DNA MER1_type 0 523 393 364 381 84 43 chr6 118765544 118765982 -63649260 + L1PBb LINE L1 127 582 -6267 422 302 30 51 chr6 118766113 118766348 -63648894 + L1PBb LINE L1 775 1004 -5845 297 306 0 0 chr6 118766668 118766753 -63648489 + L1PBb LINE L1 1479 1563 -5285 * 14039 202 27 20 chr6 118766738 118767049 -63648193 + L1P5 LINE L1 1335 1642 -5216 2377 124 25 25 chr6 118767049 118767413 -63647829 - THE1B LTR MaLR 0 364 1 14039 202 27 20 chr6 118767413 118772078 -63643164 + L1P5 LINE L1 1642 6481 -377 540 0 0 0 chr6 118772078 118772138 -63643104 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 786 201 106 17 chr6 118772139 118772318 -63642924 - Charlie1b DNA MER1_type -328 195 1 215 293 53 40 chr6 118772636 118772711 -63642531 + L2 LINE L2 3200 3275 -38 2101 142 0 3 chr6 118773529 118773831 -63641411 + AluSx SINE Alu 1 301 -11 242 56 28 0 chr6 118773834 118773870 -63641372 + (GAA)n Simple_repeat Simple_repeat 3 39 0 1692 112 22 83 chr6 118774413 118774727 -63640515 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr6 118775064 118775085 -63640157 + AT_rich Low_complexity Low_complexity 1 21 0 342 200 40 0 chr6 118775085 118775160 -63640082 + L1MC/D LINE L1 5703 5780 -2028 189 213 0 0 chr6 118775804 118775851 -63639391 + CT-rich Low_complexity Low_complexity 2 48 0 271 340 0 11 chr6 118775923 118776017 -63639225 - MER5A DNA MER1_type -67 122 30 863 275 114 17 chr6 118776100 118776246 -63638996 + L1ME3A LINE L1 5509 5639 -544 2205 147 32 18 chr6 118776246 118776586 -63638656 + MER7A DNA MER2_type 2 344 -2 863 275 114 17 chr6 118776586 118776817 -63638425 + L1ME3A LINE L1 5639 5928 -255 461 204 28 9 chr6 118776900 118777008 -63638234 + L1ME3A LINE L1 6056 6165 -5 770 190 199 5 chr6 118778122 118778333 -63636909 + MIR SINE MIR 10 261 -1 2395 90 0 3 chr6 118778658 118778991 -63636251 - AluY SINE Alu 0 332 1 2404 109 6 21 chr6 118779082 118779420 -63635822 + MER1B DNA MER1_type 2 334 -3 506 94 0 0 chr6 118779420 118779484 -63635758 + MER1B DNA MER1_type 270 333 0 462 291 113 0 chr6 118780180 118780321 -63634921 - MIR SINE MIR -104 158 2 495 241 123 36 chr6 118780400 118780620 -63634622 + MIR SINE MIR 9 247 -15 224 195 172 23 chr6 118780771 118780858 -63634384 - MIR SINE MIR -115 147 48 21 0 0 0 chr6 118780967 118780988 -63634254 + AT_rich Low_complexity Low_complexity 1 21 0 295 317 56 14 chr6 118781056 118781198 -63634044 + MIR SINE MIR 103 250 -12 190 196 39 39 chr6 118782205 118782256 -63632986 - MER5A DNA MER1_type -3 186 136 2454 61 3 0 chr6 118782267 118782561 -63632681 + AluSp SINE Alu 1 295 -18 868 121 7 14 chr6 118782570 118782710 -63632532 + FLAM_C SINE Alu 1 139 -4 2192 66 19 0 chr6 118782783 118783054 -63632188 - AluY SINE Alu 0 311 36 215 291 38 13 chr6 118783319 118783398 -63631844 + L2 LINE L2 3147 3227 -45 3620 237 35 14 chr6 118784109 118784237 -63631005 + L1M4 LINE L1 3373 3497 -2649 2640 148 41 7 chr6 118784237 118784649 -63630593 + MSTB LTR MaLR 1 426 0 3620 237 35 14 chr6 118784649 118784676 -63630566 + L1M4 LINE L1 3497 3522 -2624 2033 159 0 6 chr6 118784676 118784990 -63630252 + AluJb SINE Alu 1 312 0 3620 237 35 14 chr6 118784990 118785809 -63629433 + L1M4 LINE L1 3522 4368 -1778 1572 163 3 86 chr6 118785821 118786159 -63629083 - AluJo SINE Alu -2 310 1 874 153 0 22 chr6 118786159 118786296 -63628946 - AluJo SINE Alu -178 134 1 343 175 88 0 chr6 118786299 118786379 -63628863 + L1M4 LINE L1 4377 4463 -1683 1483 270 58 34 chr6 118786388 118787243 -63627999 - L1ME3 LINE L1 -257 5905 5034 2966 133 17 2 chr6 118787244 118787666 -63627576 - MSTA LTR MaLR 0 428 1 529 233 84 45 chr6 118787666 118787912 -63627330 - L1M4 LINE L1 -1140 5006 4747 378 289 70 0 chr6 118787916 118788030 -63627212 + L2 LINE L2 1836 1957 -1357 746 184 54 11 chr6 118788034 118788219 -63627023 - LTR37A LTR ERV1 0 426 234 7367 157 9 10 chr6 118788219 118788564 -63626678 + Tigger3b DNA MER2_type 1 345 -2683 2366 78 7 0 chr6 118788564 118788860 -63626382 + AluSp SINE Alu 1 298 -15 7367 157 9 10 chr6 118788860 118789745 -63625497 + Tigger3b DNA MER2_type 345 1230 -1 606 161 112 0 chr6 118789803 118789946 -63625296 - LTR37A LTR ERV1 -229 197 39 449 282 112 0 chr6 118790014 118790202 -63625040 + L2 LINE L2 1990 2198 -1116 874 228 103 5 chr6 118790207 118790391 -63624851 + MER58A DNA MER1_type 7 208 -16 940 251 257 34 chr6 118790396 118791275 -63623967 + L2 LINE L2 2200 3313 0 2342 109 0 10 chr6 118792434 118792746 -63622496 - AluSg SINE Alu -1 309 1 836 142 0 17 chr6 118792810 118792930 -63622312 - FLAM_A SINE Alu -15 118 1 283 211 0 78 chr6 118792988 118793078 -63622164 - LTR26E LTR ERV1 0 622 540 895 182 0 0 chr6 118793080 118793212 -63622030 + FLAM_C SINE Alu 2 133 0 4215 104 11 0 chr6 118793214 118793762 -63621480 + MER41A LTR ERV1 1 554 0 5628 118 32 5 chr6 118793763 118795090 -63620152 + MER41A-int LTR ERV1 2 1451 -4495 2539 137 13 3 chr6 118795081 118795469 -63619773 + MER41A-int LTR ERV1 2218 2609 -4928 * 1630 118 0 8 chr6 118795471 118795709 -63619533 + MER41A-int LTR ERV1 2781 3016 -4521 1451 79 0 5 chr6 118795703 118795905 -63619337 + MER41-int LTR ERV1 2862 3062 -2884 * 1889 162 34 26 chr6 118795905 118796366 -63618876 + MER41-int LTR ERV1 4028 4333 -1613 1782 124 12 0 chr6 118796381 118796631 -63618611 - AluSx SINE Alu -2 310 58 1306 184 85 151 chr6 118796653 118797360 -63617882 - LTR8A LTR ERV1 -76 618 1 1846 183 64 44 chr6 118797369 118797822 -63617420 - MER110A LTR ERV1 -6 462 1 261 355 50 20 chr6 118798028 118798228 -63617014 + L2 LINE L2 2827 3032 -240 260 125 0 141 chr6 118798503 118798567 -63616675 - Alu SINE Alu -10 292 238 2049 216 106 42 chr6 118798573 118798808 -63616434 + MER50 LTR ERV1 10 229 -505 2193 93 3 35 chr6 118798808 118799118 -63616124 + AluSp SINE Alu 1 300 -13 2049 216 106 42 chr6 118799118 118799564 -63615678 + MER50 LTR ERV1 229 734 0 638 170 20 0 chr6 118799564 118799664 -63615578 - FRAM SINE Alu -71 105 4 294 200 17 92 chr6 118799707 118799827 -63615415 - LTR33A LTR ERVL 0 523 413 544 298 34 19 chr6 118800405 118800610 -63614632 - MIR SINE MIR -33 229 22 285 300 50 33 chr6 118800837 118800957 -63614285 - L2 LINE L2 -223 3049 2928 193 302 0 0 chr6 118801023 118801076 -63614166 + L2 LINE L2 3211 3263 -9 477 228 80 0 chr6 118801092 118801254 -63613988 + MIR SINE MIR 17 191 -71 2732 115 22 38 chr6 118801279 118801668 -63613574 + MER83 LTR ERV1 3 386 -62 2253 97 7 0 chr6 118801668 118801968 -63613274 - AluSp SINE Alu -11 302 1 2732 115 22 38 chr6 118801968 118802031 -63613211 + MER83 LTR ERV1 386 448 0 486 185 62 97 chr6 118802044 118802239 -63613003 - MLT1K LTR MaLR -18 570 383 2229 128 0 0 chr6 118802305 118802617 -63612625 + AluSx SINE Alu 1 312 0 255 228 35 0 chr6 118802740 118802797 -63612445 - MLT1K LTR MaLR -388 200 142 267 79 0 0 chr6 118803728 118803766 -63611476 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 194 164 0 chr6 118804240 118804307 -63610935 + MLT1J LTR MaLR 290 367 -144 3769 98 4 4 chr6 118804340 118804850 -63610392 + MER9 LTR ERVK 2 511 0 52374 24 8 1 chr6 118804850 118810725 -63604517 + HERVK9 LTR ERVK 1 5916 0 3537 126 6 4 chr6 118810725 118811235 -63604007 + MER9 LTR ERVK 1 511 0 265 348 104 19 chr6 118811374 118811644 -63603598 + L2 LINE L2 2967 3259 -13 961 179 108 119 chr6 118811708 118812077 -63603165 + MLT1A1 LTR MaLR 1 365 0 210 208 14 83 chr6 118812218 118812290 -63602952 - MIR3 SINE MIR -22 186 120 703 242 0 0 chr6 118812297 118812425 -63602817 + FLAM_A SINE Alu 6 133 -9 369 0 0 0 chr6 118812436 118812477 -63602765 + (TG)n Simple_repeat Simple_repeat 2 42 0 675 186 0 0 chr6 118812477 118812590 -63602652 - FLAM_C SINE Alu -16 117 5 2568 149 22 38 chr6 118812635 118813048 -63602194 + MER4E LTR ERV1 1 569 -197 2220 105 20 7 chr6 118813048 118813354 -63601888 - AluSx SINE Alu -2 310 1 2568 149 22 38 chr6 118813354 118813548 -63601694 + MER4E LTR ERV1 569 765 -1 3568 116 11 1 chr6 118813656 118814414 -63600828 + LTR1B LTR ERV1 1 826 0 191 247 143 13 chr6 118814806 118814883 -63600359 + MIR SINE MIR 36 122 -86 213 65 0 0 chr6 118814919 118814950 -63600292 + (TG)n Simple_repeat Simple_repeat 2 32 0 4211 142 9 0 chr6 118814980 118815609 -63599633 + MER41B LTR ERV1 1 635 0 394 211 0 13 chr6 118815629 118815705 -63599537 + MER21B LTR ERV1 13 87 -776 2014 253 54 36 chr6 118815762 118816248 -63598994 + MER21B LTR ERV1 98 598 -265 2215 96 32 0 chr6 118816248 118816530 -63598712 + AluSg SINE Alu 1 291 -19 2014 253 54 36 chr6 118816530 118816632 -63598610 + MER21B LTR ERV1 598 697 -166 1619 112 9 4 chr6 118816667 118816900 -63598342 + LTR35 LTR ERV1 165 398 -220 180 0 0 0 chr6 118816902 118816922 -63598320 + (TC)n Simple_repeat Simple_repeat 1 20 0 636 157 74 9 chr6 118816923 118817031 -63598211 + LTR35 LTR ERV1 504 618 0 255 231 0 0 chr6 118817037 118817089 -63598153 + MER21B LTR ERV1 700 751 -112 1244 197 122 49 chr6 118817198 118817363 -63597879 + MLT1A2 LTR MaLR 1 153 -221 2110 120 0 10 chr6 118817363 118817663 -63597579 + AluSx SINE Alu 1 297 -15 1244 197 122 49 chr6 118817663 118817679 -63597563 + MLT1A2 LTR MaLR 153 166 -208 1139 84 0 6 chr6 118817679 118817858 -63597384 + (GAA)n Simple_repeat Simple_repeat 3 180 0 1244 197 122 49 chr6 118817858 118818020 -63597222 + MLT1A2 LTR MaLR 166 370 -4 1099 265 97 47 chr6 118818030 118819030 -63596212 - L1MC4a LINE L1 -748 5398 4946 2132 134 7 0 chr6 118819553 118819844 -63595398 + AluSx SINE Alu 1 293 -19 421 202 135 10 chr6 118819978 118820082 -63595160 - AluJ SINE Alu -19 293 177 * 711 184 56 0 chr6 118820077 118820202 -63595040 - AluJ SINE Alu -179 133 2 440 322 89 38 chr6 118820203 118820550 -63594692 - L1MC4a LINE L1 -1953 4193 3804 2241 112 7 7 chr6 118820550 118820855 -63594387 + AluSq SINE Alu 1 305 -8 440 322 89 38 chr6 118820855 118821082 -63594160 - L1MC4a LINE L1 -2342 3804 3590 21 57 0 0 chr6 118821199 118821234 -63594008 + AT_rich Low_complexity Low_complexity 1 35 0 547 250 22 39 chr6 118821277 118821457 -63593785 + L1ME4a LINE L1 5652 5828 -293 2007 157 13 0 chr6 118821537 118821837 -63593405 - AluSx SINE Alu -8 304 1 26 30 0 0 chr6 118821837 118821870 -63593372 + AT_rich Low_complexity Low_complexity 1 33 0 180 257 29 14 chr6 118822229 118822299 -63592943 - MIR3 SINE MIR 0 208 138 1258 163 4 98 chr6 118823091 118823355 -63591887 - MER8 DNA MER2_type 0 239 1 665 158 171 0 chr6 118823659 118823805 -63591437 - MER69 DNA AcHobo 0 2526 2356 597 108 23 93 chr6 118823806 118823865 -63591377 + L1MA8 LINE L1 6169 6216 -75 2167 122 3 3 chr6 118823865 118824176 -63591066 - AluSx SINE Alu -1 311 1 597 108 23 93 chr6 118824176 118824245 -63590997 + L1MA8 LINE L1 6216 6288 -3 1766 171 3 3 chr6 118824252 118824544 -63590698 + AluJb SINE Alu 1 292 -20 30 45 0 0 chr6 118824544 118824588 -63590654 + AT_rich Low_complexity Low_complexity 1 44 0 252 232 0 80 chr6 118824682 118824794 -63590448 - MER69 DNA AcHobo -155 2371 2269 * 271 294 64 9 chr6 118824786 118824895 -63590347 + MLT1K LTR MaLR 432 546 -42 1705 251 260 39 chr6 118826519 118826911 -63588331 + L2 LINE L2 1355 1659 -1655 2510 71 0 0 chr6 118826911 118827206 -63588036 - AluSg SINE Alu -15 295 1 1705 251 260 39 chr6 118827206 118827915 -63587327 + L2 LINE L2 1659 2700 -614 302 246 187 8 chr6 118827944 118828072 -63587170 + L1ME LINE L1 5669 5822 -344 379 277 51 27 chr6 118828152 118828408 -63586834 + L1ME4a LINE L1 5756 6017 -104 262 191 0 0 chr6 118828496 118828543 -63586699 - L1MC4 LINE L1 -1338 6704 6658 2043 138 131 13 chr6 118828605 118828988 -63586254 + MSTA LTR MaLR 1 428 0 872 176 0 0 chr6 118829026 118829162 -63586080 + FRAM SINE Alu 5 140 -36 186 43 0 0 chr6 118829166 118829189 -63586053 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr6 118829469 118829493 -63585749 + AT_rich Low_complexity Low_complexity 1 24 0 298 259 0 12 chr6 118830050 118830135 -63585107 + L1MEd LINE L1 1 84 -6035 1119 178 23 164 chr6 118830593 118830785 -63584457 + L1M4 LINE L1 4639 4856 -1290 1564 149 0 0 chr6 118830785 118831013 -63584229 + AluSx SINE Alu 1 228 -84 1119 178 23 164 chr6 118831013 118831054 -63584188 + L1M4 LINE L1 4856 4901 -1245 2180 133 17 8 chr6 118831054 118831406 -63583836 + THE1A LTR MaLR 1 355 0 1119 178 23 164 chr6 118831406 118831584 -63583658 + L1M4 LINE L1 4901 4976 -1170 1935 166 0 3 chr6 118831584 118831891 -63583351 + AluSx SINE Alu 1 306 -6 1119 178 23 164 chr6 118831891 118831959 -63583283 + L1M4 LINE L1 4976 5052 -1094 834 266 118 33 chr6 118832007 118832278 -63582964 - MLT1E LTR MaLR -223 370 77 2618 46 0 3 chr6 118832395 118832698 -63582544 + AluY SINE Alu 1 302 -9 254 307 22 6 chr6 118832893 118833017 -63582225 + MIR SINE MIR 10 133 -75 1894 161 48 17 chr6 118834122 118834476 -63580766 + MLT1A1 LTR MaLR 1 365 0 283 220 0 17 chr6 118835338 118835397 -63579845 + MER103 DNA DNA 38 95 -71 3830 134 53 46 chr6 118835741 118836462 -63578780 - LTR8A LTR ERV1 0 727 2 1780 166 0 26 chr6 118836516 118836818 -63578424 + AluJb SINE Alu 4 297 -15 1187 242 77 77 chr6 118839086 118839756 -63575486 + L1MEd LINE L1 586 1351 -1139 3084 167 48 95 chr6 118839756 118840479 -63574763 + LTR8 LTR ERV1 3 691 0 1187 242 77 77 chr6 118840479 118840719 -63574523 + L1MEd LINE L1 1351 1589 -901 2017 123 11 0 chr6 118840746 118841030 -63574212 + AluSx SINE Alu 1 287 -25 2541 138 20 0 chr6 118841036 118841428 -63573814 - LTR29 LTR ERV1 -63 559 160 304 293 0 3 chr6 118841452 118841547 -63573695 - MER34 LTR ERV1 -446 96 14 3779 108 40 32 chr6 118841549 118842181 -63573061 - MER34-int LTR ERV1 -5 6326 5690 1082 246 196 59 chr6 118843399 118844062 -63571180 - LTR41 LTR ERVL -19 754 1 22 70 0 0 chr6 118844275 118844318 -63570924 + AT_rich Low_complexity Low_complexity 1 43 0 5821 160 19 5 chr6 118844318 118846313 -63568929 - L1PA16 LINE L1 0 6166 4114 849 198 43 0 chr6 118846543 118846730 -63568512 + MIR SINE MIR 65 259 -3 346 209 66 11 chr6 118848062 118848153 -63567089 - LTR33 LTR ERVL -4 517 422 297 247 31 0 chr6 118848311 118848408 -63566834 - LTR33 LTR ERVL -350 171 72 1268 211 140 40 chr6 118850228 118850684 -63564558 - MLT1D LTR MaLR -2 503 2 250 151 94 0 chr6 118851090 118851143 -63564099 - L1MB3 LINE L1 -23 6160 6103 1609 147 36 62 chr6 118851284 118851590 -63563652 - AluJb SINE Alu -14 298 1 404 319 21 16 chr6 118851730 118851921 -63563321 + L2 LINE L2 2250 2441 -873 1671 151 0 60 chr6 118852149 118852493 -63562749 + AluJb SINE Alu 1 326 0 367 327 52 9 chr6 118853573 118853784 -63561458 + MIR SINE MIR 30 249 -13 459 52 0 0 chr6 118853791 118853849 -63561393 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2103 120 3 14 chr6 118853851 118854143 -63561099 - AluSx SINE Alu -23 289 1 21 0 0 0 chr6 118854337 118854358 -63560884 + AT_rich Low_complexity Low_complexity 1 21 0 467 267 145 47 chr6 118854481 118854825 -63560417 + MLT1K LTR MaLR 36 413 -175 353 259 45 9 chr6 118855159 118855271 -63559971 + L1ME4a LINE L1 5635 5750 -371 222 91 0 0 chr6 118855307 118855340 -63559902 + (TA)n Simple_repeat Simple_repeat 2 34 0 322 190 91 58 chr6 118855357 118855478 -63559764 + L1ME4a LINE L1 5979 6103 -18 223 178 0 0 chr6 118855979 118856024 -63559218 + T-rich Low_complexity Low_complexity 1 45 0 862 245 19 118 chr6 118857225 118857706 -63557536 - L1MEc LINE L1 -4601 1795 1363 * 2180 223 45 95 chr6 118857696 118857724 -63557518 - L1MEc LINE L1 -5606 790 762 1986 146 0 13 chr6 118857724 118858032 -63557210 - AluSx SINE Alu -8 304 1 2180 223 45 95 chr6 118858032 118858132 -63557110 - L1MEc LINE L1 -5634 762 659 185 0 40 0 chr6 118858132 118858157 -63557085 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2008 115 7 0 chr6 118858159 118858445 -63556797 - AluSp SINE Alu -25 288 1 2180 223 45 95 chr6 118858445 118858475 -63556767 - L1MEc LINE L1 -5738 658 628 563 165 8 83 chr6 118858475 118858596 -63556646 - FLAM_A SINE Alu -17 116 5 2180 223 45 95 chr6 118858596 118859171 -63556071 - L1MEc LINE L1 -5768 628 89 192 318 24 12 chr6 118859202 118859287 -63555955 - MIR3 SINE MIR -3 205 120 208 304 14 0 chr6 118859681 118859750 -63555492 - MIR3 SINE MIR -31 177 108 1697 81 32 0 chr6 118861287 118861508 -63553734 + MER30 DNA MER1_type 3 230 0 523 281 120 0 chr6 118861548 118861765 -63553477 - MIR SINE MIR -14 248 6 2122 131 0 0 chr6 118862954 118863261 -63551981 + AluSx SINE Alu 1 307 0 863 291 13 20 chr6 118864407 118864677 -63550565 + MLT1H1 LTR MaLR 1 314 -281 2271 98 0 7 chr6 118864747 118865043 -63550199 - AluSg SINE Alu -16 294 1 24 53 0 0 chr6 118865298 118865336 -63549906 + AT_rich Low_complexity Low_complexity 1 38 0 234 320 0 0 chr6 118865451 118865529 -63549713 - L1MC/D LINE L1 -1878 5930 5853 220 222 97 28 chr6 118865542 118865614 -63549628 + L2 LINE L2 3184 3260 -12 1079 163 0 0 chr6 118866071 118866243 -63548999 + FRAM SINE Alu 1 171 -5 527 307 101 4 chr6 118866518 118866775 -63548467 - L2 LINE L2 -5 3308 3027 1845 185 107 39 chr6 118866879 118867290 -63547952 + MLT1F LTR MaLR 10 448 -94 377 164 0 0 chr6 118867839 118867900 -63547342 + MLT1F LTR MaLR 507 567 0 395 71 40 0 chr6 118868530 118868602 -63546640 - AluSg/x SINE Alu -74 226 174 356 280 176 6 chr6 118869034 118869216 -63546026 + MIR SINE MIR 7 219 -43 1175 179 10 86 chr6 118869336 118869659 -63545583 + AluJo SINE Alu 17 312 0 907 136 15 0 chr6 118869670 118869802 -63545440 + AluJo SINE Alu 1 134 -178 337 200 160 80 chr6 118870523 118870624 -63544618 - MER5A DNA MER1_type 0 189 71 2338 96 0 16 chr6 118870624 118870936 -63544306 - AluSx SINE Alu -5 307 1 337 200 160 80 chr6 118870936 118870984 -63544258 - MER5A DNA MER1_type -118 71 28 1467 157 4 33 chr6 118871130 118871372 -63543870 + AluJb SINE Alu 2 236 -76 1351 107 10 10 chr6 118871472 118871668 -63543574 + AluSc SINE Alu 106 301 -8 1917 151 38 28 chr6 118871668 118872066 -63543176 + L1PBa LINE L1 1954 2355 -4508 2222 111 3 0 chr6 118872068 118872356 -63542886 + AluSq SINE Alu 1 289 -24 292 212 0 0 chr6 118872367 118872433 -63542809 + L1 LINE L1 2264 2329 -3817 2182 114 100 17 chr6 118872437 118872798 -63542444 + L1PBa LINE L1 3 393 -6470 * 2741 153 47 0 chr6 118872795 118873241 -63542001 + L1PBa LINE L1 603 1069 -5794 * 3605 254 25 85 chr6 118873237 118874187 -63541055 + L1PBa LINE L1 2607 3405 -3457 1908 138 0 0 chr6 118874187 118874448 -63540794 + AluSq SINE Alu 1 261 -52 3605 254 25 85 chr6 118874448 118875254 -63539988 + L1PBa LINE L1 3405 4258 -2604 437 82 0 0 chr6 118875355 118875416 -63539826 + AluSq SINE Alu 242 302 -10 1920 176 0 13 chr6 118875449 118875761 -63539481 - AluJb SINE Alu -4 308 1 1254 160 8 14 chr6 118875874 118876129 -63539113 + AluJo SINE Alu 1 312 0 615 209 144 13 chr6 118876145 118876298 -63538944 + FAM SINE Alu 1 173 -2 228 352 83 0 chr6 118876423 118876531 -63538711 - L2 LINE L2 -22 3250 3134 728 175 0 0 chr6 118877146 118877260 -63537982 - FLAM_C SINE Alu -28 115 2 25 31 0 0 chr6 118877269 118877301 -63537941 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr6 118877753 118877792 -63537450 + AT_rich Low_complexity Low_complexity 1 39 0 2247 106 0 3 chr6 118878839 118879132 -63536110 + AluSx SINE Alu 3 294 -18 205 316 95 0 chr6 118879861 118879956 -63535286 + L2 LINE L2 3200 3303 -10 2933 7 0 0 chr6 118881162 118881472 -63533770 - AluYa5 SINE Alu -1 310 1 496 214 0 43 chr6 118881873 118882013 -63533229 - L1ME4a LINE L1 -39 6082 5949 264 314 16 33 chr6 118882809 118882930 -63532312 - MIR3 SINE MIR -80 128 10 1995 117 0 0 chr6 118883038 118883295 -63531947 - AluSx SINE Alu -20 292 36 553 236 42 26 chr6 118883827 118884018 -63531224 - L1MC4a LINE L1 -1779 6029 5836 30 27 0 0 chr6 118884070 118884107 -63531135 + AT_rich Low_complexity Low_complexity 1 37 0 2737 172 14 54 chr6 118884147 118884776 -63530466 - L1MB3 LINE L1 -1 6182 5579 299 179 30 30 chr6 118884805 118884872 -63530370 - FLAM SINE Alu -8 125 59 * 411 172 0 0 chr6 118884844 118884908 -63530334 - Tigger1 DNA MER2_type -2072 346 283 31 44 0 0 chr6 118884965 118885010 -63530232 + AT_rich Low_complexity Low_complexity 1 45 0 585 138 0 11 chr6 118885060 118885147 -63530095 - AluJ/FLAM SINE Alu -225 87 2 15290 126 28 17 chr6 118885189 118885873 -63529369 + Tigger1 DNA MER2_type 38 713 -1705 2238 116 0 3 chr6 118885873 118886176 -63529066 + AluSg SINE Alu 1 302 -8 15290 126 28 17 chr6 118886176 118886598 -63528644 + Tigger1 DNA MER2_type 713 1129 -1289 2487 88 3 0 chr6 118886598 118886906 -63528336 + AluSp SINE Alu 1 309 -4 15290 126 28 17 chr6 118886906 118888152 -63527090 + Tigger1 DNA MER2_type 1129 2418 0 2476 71 0 10 chr6 118888535 118888843 -63526399 + AluY SINE Alu 1 305 -6 461 138 0 0 chr6 118889113 118889178 -63526064 - AluJ/FRAM SINE Alu -22 290 226 1775 147 24 14 chr6 118889279 118889572 -63525670 - AluJo SINE Alu -16 296 1 2082 99 0 74 chr6 118890483 118890806 -63524436 + AluSx SINE Alu 1 299 -13 418 247 105 68 chr6 118892262 118892481 -63522761 - MIR SINE MIR -11 251 25 2331 134 25 40 chr6 118892774 118892869 -63522373 + MSTD LTR MaLR 1 96 -300 2668 36 0 7 chr6 118892869 118893175 -63522067 + AluY SINE Alu 1 304 -7 2331 134 25 40 chr6 118893175 118893481 -63521761 + MSTD LTR MaLR 96 396 0 360 275 32 15 chr6 118893888 118894047 -63521195 + L1ME LINE L1 5436 5596 -525 815 147 28 0 chr6 118894060 118894203 -63521039 - MER5A DNA MER1_type 0 189 43 7654 36 2 0 chr6 118894204 118895103 -63520139 + L1PA5 LINE L1 5254 6154 0 882 191 0 13 chr6 118895103 118895260 -63519982 + FRAM SINE Alu 1 152 -24 31 0 0 0 chr6 118895267 118895298 -63519944 + AT_rich Low_complexity Low_complexity 1 31 0 399 191 73 27 chr6 118895367 118895477 -63519765 + MIR SINE MIR 138 252 -10 267 211 0 14 chr6 118895570 118895641 -63519601 - MLT1C LTR MaLR -198 269 200 4665 218 71 23 chr6 118895654 118895848 -63519394 + L1ME2 LINE L1 3815 3998 -2166 2518 80 0 0 chr6 118895848 118896150 -63519092 - AluSg SINE Alu -8 302 1 4665 218 71 23 chr6 118896150 118896288 -63518954 + L1ME2 LINE L1 3998 4128 -2036 207 0 0 0 chr6 118896288 118896311 -63518931 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4665 218 71 23 chr6 118896311 118896906 -63518336 + L1ME2 LINE L1 4128 4693 -1471 1823 169 0 7 chr6 118896906 118897227 -63518015 + AluJb SINE Alu 1 319 0 4665 218 71 23 chr6 118897227 118897345 -63517897 + L1ME2 LINE L1 4693 4804 -1360 2783 123 49 2 chr6 118897345 118897752 -63517490 + MSTB LTR MaLR 1 426 0 4665 218 71 23 chr6 118897752 118898942 -63516300 + L1ME2 LINE L1 4804 6155 -9 852 196 7 0 chr6 118899145 118899293 -63515949 - FRAM SINE Alu -17 149 1 1898 155 147 5 chr6 118900239 118900614 -63514628 - MSTA LTR MaLR 0 428 1 1344 204 80 28 chr6 118900656 118901008 -63514234 - MLT1A2 LTR MaLR -4 370 1 186 167 24 0 chr6 118902778 118902820 -63512422 + L2 LINE L2 1665 1707 -1607 3581 139 79 40 chr6 118903245 118903945 -63511297 + LTR8A LTR ERV1 1 727 0 2300 111 0 3 chr6 118904112 118904418 -63510824 + AluSx SINE Alu 1 305 -7 3136 123 42 2 chr6 118904746 118905227 -63510015 + MER39B LTR ERV1 1 500 -153 1645 139 20 104 chr6 118905228 118905393 -63509849 + AluYb8 SINE Alu 1 123 -195 387 0 0 0 chr6 118905393 118905436 -63509806 + (CA)n Simple_repeat Simple_repeat 2 44 0 1645 139 20 104 chr6 118905436 118905616 -63509626 + AluYb8 SINE Alu 123 317 -1 2713 109 7 34 chr6 118905652 118905870 -63509372 + MER41E LTR ERV1 112 315 -197 2243 106 3 0 chr6 118905870 118906163 -63509079 - AluSx SINE Alu -18 294 1 2713 109 7 34 chr6 118906163 118906356 -63508886 + MER41E LTR ERV1 315 512 0 1840 120 177 0 chr6 118906373 118906689 -63508553 + MER83B LTR ERV1 7 378 0 615 94 0 12 chr6 118906689 118906774 -63508468 + LTR49 LTR ERV1 510 593 -2 252 122 0 41 chr6 118907039 118907088 -63508154 + MER31B LTR ERV1 1 47 -419 * 869 161 65 0 chr6 118907082 118907250 -63507992 - MER83B LTR ERV1 -30 348 170 * 1154 195 136 84 chr6 118907245 118907650 -63507592 + MER31B LTR ERV1 41 466 0 703 290 20 31 chr6 118911213 118911468 -63503774 + L1MC4a LINE L1 5475 5726 -436 240 271 65 0 chr6 118911450 118911557 -63503685 - L1MC4 LINE L1 -1315 6727 6614 * 286 253 0 11 chr6 118911533 118911624 -63503618 + L1MC4 LINE L1 6614 6703 -1339 198 103 0 0 chr6 118911631 118911660 -63503582 + (TA)n Simple_repeat Simple_repeat 1 29 0 361 238 150 6 chr6 118911660 118911831 -63503411 + L1MC4a LINE L1 5732 5822 -340 343 254 79 89 chr6 118912119 118912399 -63502843 - L1ME4a LINE L1 -18 6103 5827 182 135 108 0 chr6 118912767 118912804 -63502438 - MIR SINE MIR -163 99 59 1527 235 21 90 chr6 118913051 118913608 -63501634 + LTR26B LTR ERV1 1 519 -12 357 318 101 23 chr6 118913676 118913805 -63501437 + L2 LINE L2 3134 3272 0 489 237 69 53 chr6 118913828 118913863 -63501379 - MIR SINE MIR -27 235 202 1753 139 55 4 chr6 118913863 118914137 -63501105 + AluJb SINE Alu 1 288 -24 489 237 69 53 chr6 118914137 118914295 -63500947 - MIR SINE MIR -60 202 42 1873 153 0 44 chr6 118914849 118915169 -63500073 - AluJo SINE Alu -6 306 1 837 168 8 8 chr6 118915172 118915303 -63499939 - AluJo/FLAM SINE Alu -180 132 2 1948 83 0 4 chr6 118916564 118916816 -63498426 + AluSc SINE Alu 58 308 -1 1532 264 49 12 chr6 118917093 118917824 -63497418 - L1M4c LINE L1 -2336 4308 3518 2203 231 98 77 chr6 118917889 118917909 -63497333 - L1M4c LINE L1 -4273 2552 2534 1772 213 0 0 chr6 118917909 118918219 -63497023 - AluJb SINE Alu -1 311 2 2203 231 98 77 chr6 118918219 118918664 -63496578 - L1M4c LINE L1 -4291 2534 2100 2203 113 7 3 chr6 118918664 118918966 -63496276 - AluSp SINE Alu -10 303 1 2203 231 98 77 chr6 118918966 118920124 -63495118 - L1M4c LINE L1 -4725 2100 722 2599 57 3 6 chr6 118920209 118920527 -63494715 - AluYb8 SINE Alu -1 317 1 2352 101 0 3 chr6 118920779 118921087 -63494155 - AluSg SINE Alu -3 307 1 1567 117 75 17 chr6 118921153 118921442 -63493800 + LTR54 LTR ERV1 1 333 -165 627 234 14 0 chr6 118921445 118921590 -63493652 + MER57A LTR ERV1 252 398 -5 409 302 78 39 chr6 118921602 118921834 -63493408 + MER57A-int LTR ERV1 7 247 -7290 4397 113 17 30 chr6 118921966 118922628 -63492614 - MER39B LTR ERV1 0 653 1 885 190 80 13 chr6 118922630 118922867 -63492375 + MER57A-int LTR ERV1 1119 1371 -3565 530 205 15 88 chr6 118922861 118923066 -63492176 + MER57-int LTR ERV1 1182 1371 -6749 * 840 210 35 97 chr6 118922908 118923066 -63492176 + LTR57-int LTR ERVL 1259 1390 -3953 2022 143 3 0 chr6 118923066 118923366 -63491876 - AluSx SINE Alu -11 301 1 840 210 35 97 chr6 118923366 118923517 -63491725 + LTR57-int LTR ERVL 1390 1549 -3794 578 199 6 84 chr6 118923403 118923597 -63491645 + MER57-int LTR ERV1 1707 1797 -3139 * 2117 138 0 0 chr6 118923597 118923894 -63491348 + AluSx SINE Alu 1 297 -15 578 199 6 84 chr6 118923894 118923942 -63491300 + MER57-int LTR ERV1 1797 1847 -3089 16182 130 24 11 chr6 118923942 118926576 -63488666 + L1P LINE L1 1529 4196 -1950 267 116 35 58 chr6 118926577 118926663 -63488579 + (TATAA)n Simple_repeat Simple_repeat 5 88 0 3740 95 4 10 chr6 118926674 118927167 -63488075 + L1PA10 LINE L1 5671 6160 -8 285 246 72 83 chr6 118927167 118927420 -63487822 + MER57-int LTR ERV1 2315 2566 -2370 180 0 0 0 chr6 118927420 118927440 -63487802 + (T)n Simple_repeat Simple_repeat 1 20 0 185 157 20 78 chr6 118927518 118927569 -63487673 - L2 LINE L2 0 3313 3266 437 270 190 55 chr6 118927797 118928217 -63487025 - MLT1K LTR MaLR -36 552 16 385 227 222 22 chr6 118928569 118928754 -63486488 + MER57-int LTR ERV1 2555 2776 -2160 1039 153 130 88 chr6 118928809 118929175 -63486067 + MER57-int LTR ERV1 3001 3174 -1762 408 190 74 74 chr6 118929415 118929536 -63485706 + MER57-int LTR ERV1 5245 5365 -966 2488 173 9 12 chr6 118929536 118929958 -63485284 + MSTB LTR MaLR 1 421 -5 2858 221 33 21 chr6 118929962 118930518 -63484724 + MER57-int LTR ERV1 4058 4625 -311 1206 202 113 57 chr6 118930518 118930800 -63484442 + AluJb SINE Alu 2 299 -3 2858 221 33 21 chr6 118930800 118930903 -63484339 + MER57-int LTR ERV1 4625 4725 -211 1465 209 63 18 chr6 118930889 118931224 -63484018 + MER57-int LTR ERV1 6793 7142 -395 * 1389 179 103 19 chr6 118931228 118931642 -63483600 + LTR54 LTR ERV1 1 395 -8 695 188 19 62 chr6 118932263 118932292 -63482950 + MER3 DNA MER1_type 1 30 -132 3865 146 55 35 chr6 118932292 118933004 -63482238 + LTR8A LTR ERV1 1 726 -1 695 188 19 62 chr6 118933004 118933134 -63482108 + MER3 DNA MER1_type 30 153 -56 2301 112 0 16 chr6 118933237 118933549 -63481693 - AluSx SINE Alu -5 307 1 241 322 89 0 chr6 118933831 118933921 -63481321 - L2 LINE L2 -4 3268 3171 568 200 187 7 chr6 118934933 118935083 -63480159 + L1ME1 LINE L1 1461 1637 -5222 1025 267 86 29 chr6 118935459 118935833 -63479409 + MER20B DNA MER1_type 24 418 -365 339 224 40 26 chr6 118935874 118935950 -63479292 + MER20B DNA MER1_type 407 483 -300 480 203 0 0 chr6 118936017 118936096 -63479146 + Tigger5 DNA MER2_type 2 80 -2243 636 189 65 32 chr6 118936147 118936332 -63478910 + MER20B DNA MER1_type 593 783 0 891 307 60 10 chr6 118937063 118937447 -63477795 - MLT1L LTR MaLR -11 604 202 2153 157 71 25 chr6 118937449 118937774 -63477468 + MSTB LTR MaLR 1 350 -76 2020 150 56 14 chr6 118937774 118938134 -63477108 + THE1C LTR MaLR 1 375 0 2153 157 71 25 chr6 118938134 118938215 -63477027 + MSTB LTR MaLR 350 426 0 302 161 71 0 chr6 118938252 118938308 -63476934 + MSTC LTR MaLR 1 60 -368 1556 288 142 24 chr6 118939376 118940413 -63474829 + L1ME1 LINE L1 4121 5279 -1678 1353 95 6 0 chr6 118940417 118940596 -63474646 - AluSg/x SINE Alu 0 312 133 197 0 71 0 chr6 118940596 118940624 -63474618 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2203 69 18 0 chr6 118940624 118940899 -63474343 - AluY SINE Alu -31 280 1 303 250 71 83 chr6 118940911 118941079 -63474163 + L1ME1 LINE L1 5286 5451 -1506 1265 255 72 23 chr6 118941140 118941869 -63473373 + L1ME1 LINE L1 5692 6451 -530 413 297 16 22 chr6 118941891 118942076 -63473166 + L1ME1 LINE L1 6579 6762 -211 382 268 155 28 chr6 118942476 118942618 -63472624 - L2 LINE L2 -243 3070 2911 448 116 23 0 chr6 118943115 118943201 -63472041 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 837 155 0 8 chr6 118943347 118943476 -63471766 + AluJb SINE Alu 2 129 -183 508 304 71 11 chr6 118943480 118943760 -63471482 - L1M4 LINE L1 -2376 3770 3474 22 0 0 0 chr6 118943790 118943812 -63471430 + AT_rich Low_complexity Low_complexity 1 22 0 768 163 0 0 chr6 118943876 118943999 -63471243 + AluSg/x SINE Alu 188 310 0 246 301 106 9 chr6 118946330 118946443 -63468799 + L2 LINE L2 3148 3271 -1 2238 115 3 3 chr6 118946554 118946866 -63468376 + AluSp SINE Alu 1 312 -1 2449 97 0 0 chr6 118946981 118947290 -63467952 + AluSg SINE Alu 1 309 -1 283 333 186 21 chr6 118947293 118947852 -63467390 + L2 LINE L2 2216 2866 -448 319 287 98 0 chr6 118948071 118948193 -63467049 + L2 LINE L2 3173 3306 -7 338 259 89 57 chr6 118948938 118949096 -63466146 - MIR3 SINE MIR -2 206 44 383 219 51 11 chr6 118949335 118949446 -63465796 + L1ME1 LINE L1 6873 7145 0 21 36 0 0 chr6 118950550 118950578 -63464664 + AT_rich Low_complexity Low_complexity 1 28 0 256 242 30 0 chr6 118950842 118950908 -63464334 - MIR SINE MIR -85 177 110 793 268 75 70 chr6 118951335 118951790 -63463452 + Tigger8 DNA MER2_type 155 611 -55 667 228 32 0 chr6 118951899 118952022 -63463220 - FLAM_A SINE Alu -6 127 1 1960 218 110 88 chr6 118952059 118952867 -63462375 - LTR1B LTR ERV1 0 826 1 384 235 0 5 chr6 118952868 118952981 -63462261 + MLT1E LTR MaLR 6 117 -450 413 149 0 15 chr6 118953075 118953142 -63462100 + Tigger5 DNA MER2_type 14 79 -2244 294 271 0 0 chr6 118953143 118953213 -63462029 - Tigger5 DNA MER2_type -5 2318 2249 292 291 0 23 chr6 118953206 118953292 -63461950 + Tigger5 DNA MER2_type 2240 2323 0 * 999 194 18 0 chr6 118953338 118953508 -63461734 - FAM SINE Alu -1 174 2 2292 110 0 19 chr6 118953846 118954164 -63461078 - AluSx SINE Alu 0 312 1 346 268 62 10 chr6 118954351 118954448 -63460794 - L3 LINE CR1 -1043 534 433 189 281 16 0 chr6 118954541 118954605 -63460637 - L3 LINE CR1 -1136 441 377 26 64 0 0 chr6 118954960 118955007 -63460235 + AT_rich Low_complexity Low_complexity 1 47 0 1779 174 3 20 chr6 118955426 118955725 -63459517 - AluJb SINE Alu -18 294 1 188 331 154 31 chr6 118956312 118956442 -63458800 + L2 LINE L2 3117 3262 -10 259 354 131 53 chr6 118956496 118957401 -63457841 - L2 LINE L2 0 3272 2301 850 265 136 32 chr6 118958445 118959128 -63456114 - L1M4 LINE L1 -3016 3130 2377 2218 97 19 19 chr6 118959349 118959689 -63455553 - L1MA2 LINE L1 -12 6292 5950 2353 95 0 7 chr6 118959689 118959993 -63455249 - AluSg SINE Alu -8 302 1 2218 97 19 19 chr6 118959993 118960012 -63455230 - L1MA2 LINE L1 -353 5951 5933 221 127 55 18 chr6 118960012 118960086 -63455156 + (TTAAA)n Simple_repeat Simple_repeat 1 76 0 600 163 0 0 chr6 118960094 118960186 -63455056 - FLAM_C SINE Alu -27 116 25 716 106 0 0 chr6 118960496 118960600 -63454642 - L1MA2 LINE L1 -353 5952 5849 313 220 188 16 chr6 118960595 118960781 -63454461 - L1M4 LINE L1 -3760 2386 2169 * 241 167 21 42 chr6 118961123 118961219 -63454023 + CT-rich Low_complexity Low_complexity 4 97 0 564 196 75 0 chr6 118961224 118961331 -63453911 - FLAM_A SINE Alu -17 116 2 721 254 18 18 chr6 118961410 118961630 -63453612 + L2 LINE L2 3092 3311 -2 2364 78 3 26 chr6 118961675 118961982 -63453260 - AluSg SINE Alu -10 300 1 467 107 13 0 chr6 118962311 118962386 -63452856 + (TTCC)n Simple_repeat Simple_repeat 4 79 0 2171 121 13 3 chr6 118962390 118962697 -63452545 - AluSx SINE Alu -2 310 1 294 344 16 16 chr6 118962723 118962845 -63452397 + L2 LINE L2 3180 3301 -12 239 390 46 32 chr6 118962920 118963048 -63452194 + L2 LINE L2 2192 2317 -997 1881 157 0 20 chr6 118963048 118963342 -63451900 - AluJo SINE Alu -24 288 1 239 390 46 32 chr6 118963342 118963623 -63451619 + L2 LINE L2 2317 2607 -707 1678 167 6 65 chr6 118963754 118964078 -63451164 - AluJb SINE Alu -7 305 1 184 356 0 27 chr6 118964323 118964396 -63450846 - L3 LINE CR1 -17 1560 1490 2309 78 0 10 chr6 118966015 118966311 -63448931 - AluSx SINE Alu -19 293 1 198 213 128 0 chr6 118966737 118966784 -63448458 - L2 LINE L2 -19 3294 3242 2244 69 4 4 chr6 118968172 118968448 -63446794 + AluSc SINE Alu 1 276 -33 2185 106 0 3 chr6 118969491 118969784 -63445458 + AluSx SINE Alu 1 292 -20 482 295 29 38 chr6 118970121 118970331 -63444911 + MIR SINE MIR 52 259 -3 856 263 19 5 chr6 118970506 118970711 -63444531 + MER63A DNA MER1_type 3 210 0 207 0 0 0 chr6 118970730 118970753 -63444489 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2202 82 0 10 chr6 118970778 118971072 -63444170 - AluSc SINE Alu -18 291 1 510 212 25 143 chr6 118971178 118971280 -63443962 + MIR SINE MIR 19 87 -175 2109 105 0 0 chr6 118971280 118971557 -63443685 - AluSx SINE Alu -30 282 6 510 212 25 143 chr6 118971557 118971657 -63443585 + MIR SINE MIR 87 197 -65 249 86 0 0 chr6 118971776 118971811 -63443431 - U2 snRNA snRNA -153 35 1 23 33 0 0 chr6 118971818 118971848 -63443394 + AT_rich Low_complexity Low_complexity 1 30 0 1498 127 5 0 chr6 118974357 118974570 -63440672 + AluSx SINE Alu 1 214 -98 633 120 0 20 chr6 118975326 118975426 -63439816 - Tigger7 DNA MER2_type 0 2487 2390 * 1297 179 38 19 chr6 118975425 118975687 -63439555 - Tigger7 DNA MER2_type -2220 267 1 2064 146 0 3 chr6 118975781 118976083 -63439159 - AluSx SINE Alu -11 301 1 964 183 45 30 chr6 118976290 118976492 -63438750 + AluJb SINE Alu 97 301 -11 258 239 0 0 chr6 118976640 118976711 -63438531 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 1340 206 41 49 chr6 118977252 118977617 -63437625 - MLT1A1 LTR MaLR -1 364 3 410 350 71 24 chr6 118978195 118978492 -63436750 + L2 LINE L2 2059 2369 -945 831 113 0 85 chr6 118978546 118978687 -63436555 + AluJ SINE Alu 1 129 -173 524 237 171 13 chr6 118978716 118978868 -63436374 - MER5A DNA MER1_type -1 188 13 622 113 87 0 chr6 118978985 118979100 -63436142 - Tigger1 DNA MER2_type -2155 263 139 870 133 27 20 chr6 118979106 118979256 -63435986 + AluJ SINE Alu 133 283 -29 828 219 0 20 chr6 118979281 118979432 -63435810 + AluJo SINE Alu 6 153 -159 2227 91 4 0 chr6 118979654 118979930 -63435312 + AluSp SINE Alu 2 278 -35 585 171 21 36 chr6 118980122 118980262 -63434980 + AluSg/x SINE Alu 166 303 -9 633 177 89 32 chr6 118980281 118980405 -63434837 - FLAM_A SINE Alu -2 131 1 536 175 80 15 chr6 118980434 118980571 -63434671 + MER31-int LTR ERV1 3519 3664 -1272 1310 200 9 0 chr6 118980571 118980801 -63434441 - AluJb SINE Alu -29 283 52 4928 58 0 0 chr6 118980802 118981411 -63433831 + L1PA6 LINE L1 5545 6153 -1 476 121 0 0 chr6 118981429 118981495 -63433747 - AluJb SINE Alu -246 66 1 22 0 0 0 chr6 118981616 118981638 -63433604 + AT_rich Low_complexity Low_complexity 1 22 0 247 214 87 8 chr6 118982411 118982537 -63432705 + L1ME4a LINE L1 5975 6110 -11 22 35 0 0 chr6 118982754 118982783 -63432459 + AT_rich Low_complexity Low_complexity 1 29 0 203 250 23 0 chr6 118983402 118983446 -63431796 + C-rich Low_complexity Low_complexity 4 48 0 331 219 0 0 chr6 118983654 118983727 -63431515 - Charlie5 DNA MER1_type 0 2624 2552 2342 103 3 0 chr6 118983729 118984030 -63431212 + AluSq SINE Alu 1 302 -11 758 237 107 40 chr6 118984519 118984920 -63430322 + L2 LINE L2 2182 3155 -158 1574 198 35 33 chr6 118984986 118985322 -63429920 + LTR37A LTR ERV1 2 336 -90 1881 145 7 30 chr6 118985322 118985626 -63429616 + AluJo SINE Alu 1 297 -15 2156 106 10 22 chr6 118985628 118985939 -63429303 + AluSq SINE Alu 3 309 -4 1574 198 35 33 chr6 118985939 118986023 -63429219 + LTR37A LTR ERV1 336 426 0 604 228 69 7 chr6 118986106 118986251 -63428991 + L2 LINE L2 3159 3312 -1 236 189 0 0 chr6 118986864 118986917 -63428325 + L1ME LINE L1 5734 5786 -335 21 36 0 0 chr6 118986936 118986964 -63428278 + AT_rich Low_complexity Low_complexity 1 28 0 2214 135 0 0 chr6 118987010 118987322 -63427920 + AluSx SINE Alu 1 312 0 2069 131 0 25 chr6 118987351 118987665 -63427577 + AluSx SINE Alu 1 306 -6 277 292 106 35 chr6 118988990 118989103 -63426139 + MIR SINE MIR 2 122 -140 2385 86 7 0 chr6 118989189 118989493 -63425749 + AluSx SINE Alu 1 306 -6 2063 117 13 33 chr6 118989997 118990304 -63424938 - AluSx SINE Alu -11 301 1 191 323 84 40 chr6 118990830 118991152 -63424090 + L2 LINE L2 2127 2462 -852 2261 110 3 0 chr6 118991152 118991452 -63423790 + AluSx SINE Alu 1 301 -11 476 296 81 96 chr6 118991555 118991890 -63423352 + L2 LINE L2 2937 3266 -6 199 276 35 0 chr6 118992839 118992897 -63422345 + L2 LINE L2 3253 3312 -1 823 132 0 8 chr6 118993211 118993332 -63421910 + FLAM_C SINE Alu 1 120 -23 33 0 0 0 chr6 118993332 118993365 -63421877 + AT_rich Low_complexity Low_complexity 1 33 0 1152 110 0 0 chr6 118994398 118994544 -63420698 + AluSq/x SINE Alu 1 146 -166 428 155 0 0 chr6 118994560 118994631 -63420611 + AluS SINE Alu 227 297 -15 4645 264 41 18 chr6 118994672 118996276 -63418966 + L1PBa LINE L1 3 1643 -5220 * 5982 150 24 9 chr6 118996243 118997482 -63417760 + L1PBb LINE L1 7 1263 -4941 2237 116 0 3 chr6 118997487 118997788 -63417454 + AluSg SINE Alu 1 300 -10 477 186 0 41 chr6 118997792 118997889 -63417353 + AluS SINE Alu 1 93 -219 1118 187 0 0 chr6 119098415 119098613 -63316629 + AluSg/x SINE Alu 105 302 -8 293 244 93 12 chr6 119098750 119098836 -63316406 + MIR SINE MIR 11 103 -159 2141 103 3 3 chr6 119098836 119099127 -63316115 - AluSg SINE Alu -19 291 1 442 52 0 0 chr6 119099181 119099239 -63316003 - MER41A LTR ERV1 -88 466 409 245 260 57 101 chr6 119099333 119099487 -63315755 + L1MD2 LINE L1 3876 4018 -2128 1615 161 53 0 chr6 119099487 119099772 -63315470 + AluJb SINE Alu 1 300 -12 245 260 57 101 chr6 119099772 119099844 -63315398 + L1MD2 LINE L1 4018 4092 -2054 258 189 189 11 chr6 119100112 119100207 -63315035 + L1MD2 LINE L1 4323 4434 -1712 1934 103 22 7 chr6 119100211 119100483 -63314759 + AluSq SINE Alu 1 276 -37 204 40 0 0 chr6 119100489 119100514 -63314728 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 859 230 201 20 chr6 119100632 119100753 -63314489 + L1MD2 LINE L1 4725 4823 -1339 2057 131 10 0 chr6 119100753 119101044 -63314198 + AluSx SINE Alu 12 305 -7 859 230 201 20 chr6 119101044 119101542 -63313700 + L1MD2 LINE L1 4823 5458 -704 689 220 8 0 chr6 119101550 119101706 -63313536 + L1MD2 LINE L1 5680 5815 -349 225 0 0 0 chr6 119101898 119101923 -63313319 + (TA)n Simple_repeat Simple_repeat 1 25 0 2289 108 7 0 chr6 119101924 119102220 -63313022 - AluSx SINE Alu -14 298 1 1997 124 3 3 chr6 119102377 119102660 -63312582 + AluSx SINE Alu 3 285 -27 474 197 26 0 chr6 119102886 119102962 -63312280 - AluJo SINE Alu -19 293 216 870 153 0 15 chr6 119102962 119103099 -63312143 - AluJo SINE Alu -177 135 1 1978 157 7 0 chr6 119103134 119103428 -63311814 + AluSx SINE Alu 1 296 -16 757 253 29 0 chr6 119103985 119104155 -63311087 + FAM SINE Alu 1 175 0 278 25 0 25 chr6 119104639 119104679 -63310563 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 23 0 0 0 chr6 119107028 119107051 -63308191 + AT_rich Low_complexity Low_complexity 1 23 0 1072 96 0 18 chr6 119107456 119107622 -63307620 + L1PA13 LINE L1 6000 6162 -1 1882 128 42 17 chr6 119108082 119108370 -63306872 + AluSx SINE Alu 1 295 -17 521 190 5 17 chr6 119108818 119109022 -63306220 + AluJo SINE Alu 47 302 -10 1747 177 7 13 chr6 119109329 119109628 -63305614 + AluJb SINE Alu 1 297 -15 464 175 155 0 chr6 119109995 119110092 -63305150 + FLAM_A SINE Alu 5 116 -17 2296 103 0 13 chr6 119110370 119110680 -63304562 + AluSq SINE Alu 1 306 -7 2002 113 25 0 chr6 119111512 119111796 -63303446 + AluSg SINE Alu 1 291 -19 2206 95 18 0 chr6 119112132 119112417 -63302825 + AluSq SINE Alu 1 290 -23 385 239 47 29 chr6 119112525 119112661 -63302581 + AluJb SINE Alu 190 280 -22 576 164 29 0 chr6 119112773 119112877 -63302365 - L1MB2 LINE L1 -26 6145 6039 2164 105 14 0 chr6 119112880 119113175 -63302067 - AluSx SINE Alu -13 299 1 321 146 0 18 chr6 119113176 119113231 -63302011 + Tigger4(Zombi) DNA MER2_type 2678 2731 0 872 126 0 0 chr6 119113249 119113368 -63301874 - AluSc SINE Alu -190 119 1 2278 91 0 3 chr6 119113385 119113672 -63301570 - AluY SINE Alu -1 310 25 986 118 0 7 chr6 119113674 119113809 -63301433 - FLAM_C SINE Alu -9 134 1 223 273 25 74 chr6 119114238 119114359 -63300883 + MIR3 SINE MIR 89 203 -5 1794 148 58 0 chr6 119114433 119114724 -63300518 + AluJb SINE Alu 1 308 -4 182 136 68 0 chr6 119114956 119115000 -63300242 + L2 LINE L2 2915 2961 -311 2275 106 30 0 chr6 119115282 119115583 -63299659 + AluSx SINE Alu 2 311 -1 2085 121 7 13 chr6 119115593 119115900 -63299342 + AluSx SINE Alu 1 305 -7 281 246 0 15 chr6 119115923 119115988 -63299254 - MLT1J LTR MaLR -344 167 104 1643 186 16 23 chr6 119116109 119116416 -63298826 + AluJo SINE Alu 1 305 -7 633 150 0 88 chr6 119116416 119116554 -63298688 - AluJb SINE Alu -184 128 2 351 298 78 31 chr6 119116623 119116814 -63298428 - MIR SINE MIR 0 262 63 1923 162 0 7 chr6 119116817 119117120 -63298122 - AluJo SINE Alu -11 301 1 2192 127 16 0 chr6 119117358 119117665 -63297577 - AluSx SINE Alu 0 312 1 331 211 37 170 chr6 119117854 119117927 -63297315 + MER5A DNA MER1_type 1 82 -107 2259 103 3 10 chr6 119117927 119118229 -63297013 + AluSp SINE Alu 1 300 -13 491 0 17 0 chr6 119118229 119118288 -63296954 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 1727 164 25 0 chr6 119118288 119118562 -63296680 + AluJb SINE Alu 16 296 -16 331 211 37 170 chr6 119118562 119118704 -63296538 + MER5A DNA MER1_type 79 189 0 2463 73 7 0 chr6 119118745 119119045 -63296197 + AluSp SINE Alu 1 302 -11 827 264 42 0 chr6 119119069 119119308 -63295934 + MIR SINE MIR 13 261 -1 2268 96 3 3 chr6 119119355 119119647 -63295595 + AluSx SINE Alu 3 294 -18 350 312 51 14 chr6 119120434 119120572 -63294670 - MIR3 SINE MIR -13 195 53 1802 141 0 62 chr6 119120732 119120846 -63294396 + AluJb SINE Alu 1 121 -191 2381 82 0 0 chr6 119120846 119121140 -63294102 - AluY SINE Alu -17 294 1 1802 141 0 62 chr6 119121140 119121355 -63293887 + AluJb SINE Alu 121 312 0 540 217 28 0 chr6 119121525 119121631 -63293611 - FLAM_A SINE Alu -20 122 14 417 229 5 133 chr6 119121796 119122014 -63293228 - L1MC4 LINE L1 -8 8034 7845 2221 74 29 35 chr6 119122193 119122505 -63292737 + AluSg SINE Alu 1 310 0 1373 166 83 40 chr6 119122556 119122833 -63292409 + AluJo SINE Alu 1 289 -23 2238 110 3 19 chr6 119123090 119123407 -63291835 - AluSq SINE Alu -1 312 1 2216 117 3 0 chr6 119123933 119124231 -63291011 + AluSg SINE Alu 3 301 -9 259 95 0 0 chr6 119124430 119124472 -63290770 - AluSx SINE Alu 0 302 261 1919 127 19 0 chr6 119124579 119124847 -63290395 - AluSx SINE Alu -39 273 1 1337 127 97 82 chr6 119125493 119125642 -63289600 - AluJo SINE Alu -20 292 136 2222 78 17 3 chr6 119125642 119125936 -63289306 - AluSq SINE Alu -15 298 1 1337 127 97 82 chr6 119125936 119126053 -63289189 - AluJo SINE Alu -176 136 22 2353 95 0 0 chr6 119127647 119127952 -63287290 - AluSp SINE Alu -8 305 1 329 234 0 26 chr6 119128018 119128095 -63287147 + MIR SINE MIR 170 244 -18 971 169 0 6 chr6 119128182 119128360 -63286882 - FRAM SINE Alu 0 176 1 2292 84 0 3 chr6 119128639 119128925 -63286317 + AluY SINE Alu 3 287 -24 2046 119 54 0 chr6 119129269 119129564 -63285678 - AluSx SINE Alu -1 311 1 2261 104 7 13 chr6 119129679 119129988 -63285254 - AluSx SINE Alu -5 307 1 1723 173 0 20 chr6 119130311 119130612 -63284630 + AluJo SINE Alu 1 295 -17 935 133 0 107 chr6 119130612 119130715 -63284527 + L1MB7 LINE L1 5865 5939 -245 792 144 0 0 chr6 119130715 119130833 -63284409 + FLAM_C SINE Alu 1 118 -15 935 133 0 107 chr6 119130833 119130925 -63284317 + L1MB7 LINE L1 5939 6039 -145 3829 93 7 27 chr6 119130939 119130971 -63284271 - MER41B LTR ERV1 -88 547 516 2292 102 3 0 chr6 119130971 119131265 -63283977 + AluSq SINE Alu 1 295 -18 3829 93 7 27 chr6 119131265 119131790 -63283452 - MER41B LTR ERV1 -119 516 1 1659 94 0 0 chr6 119131792 119132005 -63283237 - MER41B-int LTR ERV1 -4 5942 5730 952 92 0 0 chr6 119132003 119132134 -63283108 - MER41B-int LTR ERV1 -1177 4769 4639 * 492 148 23 23 chr6 119132129 119132217 -63283025 - MER41B-int LTR ERV1 -5858 88 1 * 1028 104 7 0 chr6 119132217 119132371 -63282871 - MER41B LTR ERV1 0 635 481 722 115 58 77 chr6 119132372 119132528 -63282714 + L1MB7 LINE L1 6027 6179 -5 2190 110 127 127 chr6 119132777 119133296 -63281946 - LTR44 LTR ERV1 0 519 1 2325 77 13 13 chr6 119133615 119133749 -63281493 + AluSc SINE Alu 1 134 -175 2433 71 40 0 chr6 119133749 119134045 -63281197 + AluY SINE Alu 1 308 -3 2325 77 13 13 chr6 119134045 119134208 -63281034 + AluSc SINE Alu 133 298 -11 1063 139 42 0 chr6 119134924 119135089 -63280153 - AluJo/FRAM SINE Alu -12 300 129 2081 131 0 13 chr6 119135092 119135415 -63279827 - AluSx SINE Alu 0 312 1 751 122 0 0 chr6 119135549 119135656 -63279586 + AluSc SINE Alu 191 297 -12 1722 173 0 16 chr6 119135785 119136092 -63279150 - AluJo SINE Alu 0 312 11 965 144 10 85 chr6 119136216 119136341 -63278901 - MER5A DNA MER1_type -3 186 80 1649 136 106 7 chr6 119136341 119136614 -63278628 - AluSx SINE Alu -12 300 1 965 144 10 85 chr6 119136614 119136689 -63278553 - MER5A DNA MER1_type -109 80 1 1696 94 9 5 chr6 119136858 119137081 -63278161 + AluSx SINE Alu 6 229 -83 2342 97 3 10 chr6 119137087 119137396 -63277846 - AluSx SINE Alu -1 311 5 2159 103 41 0 chr6 119137456 119137747 -63277495 - AluSx SINE Alu -9 303 1 22 0 0 0 chr6 119137787 119137809 -63277433 + AT_rich Low_complexity Low_complexity 1 22 0 1816 178 13 0 chr6 119137901 119138204 -63277038 + AluJb SINE Alu 1 307 -5 2130 98 0 4 chr6 119138253 119138530 -63276712 + AluSx SINE Alu 1 276 -36 206 111 56 0 chr6 119138530 119138566 -63276676 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 809 206 36 0 chr6 119138973 119139138 -63276104 + MER5A DNA MER1_type 1 171 -18 1253 172 5 0 chr6 119139149 119139347 -63275895 - AluJb SINE Alu -27 285 87 2248 112 3 25 chr6 119139390 119139704 -63275538 - AluSx SINE Alu -5 307 1 2271 84 3 0 chr6 119139715 119140002 -63275240 - AluSp SINE Alu -24 289 2 186 43 0 0 chr6 119140003 119140026 -63275216 + (T)n Simple_repeat Simple_repeat 1 23 0 1822 157 13 35 chr6 119140036 119140179 -63275063 + AluJb SINE Alu 1 146 -166 2394 97 3 0 chr6 119140179 119140478 -63274764 + AluSp SINE Alu 1 300 -13 1822 157 13 35 chr6 119140478 119140652 -63274590 + AluJb SINE Alu 146 311 -1 655 100 0 11 chr6 119141031 119141121 -63274121 + FLAM_A SINE Alu 28 116 -26 325 172 0 0 chr6 119141205 119141263 -63273979 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 1955 102 26 0 chr6 119141263 119141527 -63273715 - AluSp SINE Alu -10 303 33 1833 87 117 8 chr6 119141702 119141966 -63273276 - AluSg1 SINE Alu -16 293 1 1179 121 0 0 chr6 119142349 119142514 -63272728 + AluSg/x SINE Alu 142 306 -6 2103 119 17 3 chr6 119142529 119142823 -63272419 + AluSq SINE Alu 1 298 -15 1266 187 16 16 chr6 119143241 119143498 -63271744 + AluJo SINE Alu 34 290 -22 483 243 134 43 chr6 119143527 119143852 -63271390 - L1MDb LINE L1 -5355 1051 712 2214 86 20 20 chr6 119144051 119144355 -63270887 + AluY SINE Alu 1 304 -7 1476 180 14 21 chr6 119144810 119145093 -63270149 - AluJb SINE Alu -19 293 13 872 218 35 0 chr6 119145455 119145629 -63269613 + MER58A DNA MER1_type 45 224 0 532 125 0 0 chr6 119145726 119145806 -63269436 + AluSg/x SINE Alu 214 293 -16 1986 121 0 51 chr6 119146103 119146416 -63268826 - AluSx SINE Alu -15 297 1 1023 227 14 5 chr6 119146527 119146743 -63268499 + MER20 DNA MER1_type 1 218 -1 1699 134 4 15 chr6 119147004 119147266 -63267976 + AluSx SINE Alu 34 292 -20 1303 224 114 27 chr6 119147280 119147726 -63267516 + L1 LINE L1 4848 5332 -814 1506 131 31 4 chr6 119147745 119147974 -63267268 + AluSx SINE Alu 60 294 -18 1038 184 106 60 chr6 119148579 119148862 -63266380 - AluJb SINE Alu -6 296 1 283 219 167 0 chr6 119149642 119149738 -63265504 + L1M4 LINE L1 4965 5076 -1070 270 289 144 21 chr6 119149762 119149949 -63265293 - L1M4 LINE L1 -2540 3606 3397 514 145 24 0 chr6 119150135 119150218 -63265024 + AluJb SINE Alu 202 286 -26 394 224 294 0 chr6 119150254 119150397 -63264845 - MIR SINE MIR -64 198 14 26 30 0 0 chr6 119152421 119152454 -63262788 + GC_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr6 119152969 119153000 -63262242 + AT_rich Low_complexity Low_complexity 1 31 0 2165 87 42 0 chr6 119154563 119154849 -63260393 - AluSx SINE Alu -14 298 1 229 97 0 0 chr6 119155282 119155313 -63259929 + U5 snRNA snRNA 1 31 -85 1197 235 96 147 chr6 119155625 119156875 -63258367 + L2 LINE L2 1705 2890 -424 528 253 111 61 chr6 119157008 119157269 -63257973 - MLT1J LTR MaLR -35 476 203 1864 162 7 3 chr6 119157292 119157600 -63257642 - AluJb SINE Alu -3 309 1 587 258 41 16 chr6 119157623 119157817 -63257425 - MER63A DNA MER1_type -1 209 11 850 115 0 43 chr6 119157892 119158031 -63257211 + FLAM_C SINE Alu 1 133 0 2243 110 3 0 chr6 119158134 119158442 -63256800 + AluSp SINE Alu 1 309 -4 2305 83 7 10 chr6 119158512 119158813 -63256429 + AluSq SINE Alu 1 300 -13 1292 171 334 32 chr6 119158817 119159302 -63255940 + LTR29 LTR ERV1 1 595 0 2571 213 113 57 chr6 119159371 119159564 -63255678 - Zaphod DNA AcHobo -3099 932 751 2360 116 0 0 chr6 119159564 119159875 -63255367 + AluSx SINE Alu 1 311 -1 2571 213 113 57 chr6 119159875 119159932 -63255310 - Zaphod DNA AcHobo -3280 751 699 2122 120 20 3 chr6 119159932 119160233 -63255009 + AluSx SINE Alu 1 306 -6 2571 213 113 57 chr6 119160233 119160862 -63254380 - Zaphod DNA AcHobo -3332 699 2 2108 93 58 0 chr6 119161383 119161661 -63253581 + AluSq SINE Alu 1 294 -19 2317 104 0 0 chr6 119161957 119162255 -63252987 + AluSx SINE Alu 1 298 -14 2397 60 0 4 chr6 119162382 119162704 -63252538 + AluY SINE Alu 1 321 0 325 243 60 124 chr6 119162721 119162857 -63252385 + HAL1 LINE L1 748 891 -1616 2087 130 0 10 chr6 119162857 119163156 -63252086 + AluSx SINE Alu 1 296 -16 325 243 60 124 chr6 119163156 119163389 -63251853 + HAL1 LINE L1 891 1093 -1414 1153 167 54 5 chr6 119163403 119163607 -63251635 + AluSg/x SINE Alu 85 298 -12 586 186 9 0 chr6 119163621 119163734 -63251508 + HAL1 LINE L1 1461 1574 -933 2116 122 0 28 chr6 119163747 119164067 -63251175 - AluSx SINE Alu -1 311 1 197 59 59 0 chr6 119164067 119164101 -63251141 + T-rich Low_complexity Low_complexity 2 37 0 1795 123 39 42 chr6 119164101 119164252 -63250990 - AluSx SINE Alu -28 284 133 2573 60 0 0 chr6 119164252 119164550 -63250692 - AluY SINE Alu -13 298 1 1795 123 39 42 chr6 119164550 119164683 -63250559 - AluSx SINE Alu -179 133 1 357 43 0 0 chr6 119164755 119164802 -63250440 + (TG)n Simple_repeat Simple_repeat 2 48 0 2199 118 0 3 chr6 119164802 119165108 -63250134 - AluSx SINE Alu -5 307 3 1954 101 12 0 chr6 119165500 119165757 -63249485 + AluSq SINE Alu 1 260 -53 237 33 0 0 chr6 119165757 119165787 -63249455 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1724 163 0 31 chr6 119167485 119167774 -63247468 + AluJo SINE Alu 3 282 -30 286 88 0 35 chr6 119167799 119167856 -63247386 + (TA)n Simple_repeat Simple_repeat 1 55 0 311 183 73 0 chr6 119167868 119167950 -63247292 - L1MC4 LINE L1 -1339 6703 6616 418 103 8 56 chr6 119167958 119168084 -63247158 + (TA)n Simple_repeat Simple_repeat 1 120 0 2201 93 14 3 chr6 119168086 119168375 -63246867 - AluSp SINE Alu -21 292 1 2173 117 3 3 chr6 119168447 119168745 -63246497 - AluSq SINE Alu -15 298 1 549 169 0 0 chr6 119169107 119169196 -63246046 - U6 snRNA snRNA -3 104 16 1794 179 3 0 chr6 119169531 119169828 -63245414 - AluJb SINE Alu -14 298 1 585 185 118 0 chr6 119170433 119170552 -63244690 + FLAM_C SINE Alu 1 133 0 2420 100 3 0 chr6 119170879 119171188 -63244054 + AluSx SINE Alu 1 310 -2 1816 167 0 55 chr6 119171886 119172020 -63243222 + AluSx SINE Alu 1 141 -171 2399 80 0 7 chr6 119172020 119172321 -63242921 + AluSc SINE Alu 1 299 -10 1816 167 0 55 chr6 119172321 119172516 -63242726 + AluSx SINE Alu 141 312 0 467 173 0 25 chr6 119172537 119172618 -63242624 - Tigger1 DNA MER2_type 0 2418 2340 189 0 0 0 chr6 119172623 119172644 -63242598 + (A)n Simple_repeat Simple_repeat 1 21 0 2310 97 10 3 chr6 119173107 119173417 -63241825 + AluSx SINE Alu 1 312 0 812 166 121 0 chr6 119173421 119173578 -63241664 + AluJb SINE Alu 129 304 -8 1972 147 3 0 chr6 119173865 119174189 -63241053 + AluSx SINE Alu 1 325 0 814 176 0 15 chr6 119174225 119174361 -63240881 + FLAM_C SINE Alu 1 134 -9 2344 97 0 7 chr6 119174361 119174661 -63240581 + AluSx SINE Alu 1 298 -14 314 290 90 55 chr6 119174817 119175072 -63240170 - ERVL LTR ERVL -4561 1203 940 311 358 62 28 chr6 119175193 119175372 -63239870 - ERVL LTR ERVL -5043 721 537 1750 166 16 23 chr6 119175581 119175888 -63239354 - AluJo SINE Alu -6 306 2 1209 192 56 42 chr6 119176610 119176897 -63238345 - AluJo SINE Alu -11 291 1 2108 134 10 0 chr6 119177082 119177387 -63237855 - AluSx SINE Alu -4 308 1 1171 151 52 162 chr6 119177526 119177613 -63237629 + MLT2C1 LTR ERVL 1 96 -301 2390 99 0 13 chr6 119177613 119177925 -63237317 + AluSg SINE Alu 1 308 -2 1171 151 52 162 chr6 119177925 119178088 -63237154 + MLT2C1 LTR ERVL 96 275 -122 2614 48 0 0 chr6 119178088 119178383 -63236859 - AluY SINE Alu -16 295 1 1171 151 52 162 chr6 119178383 119178537 -63236705 + MLT2C1 LTR ERVL 275 356 -41 383 0 21 0 chr6 119178537 119178584 -63236658 + (CA)n Simple_repeat Simple_repeat 2 49 0 1171 151 52 162 chr6 119178584 119178621 -63236621 + MLT2C1 LTR ERVL 356 395 -2 444 178 28 9 chr6 119178636 119178743 -63236499 - MER45 DNA AcHobo 0 1581 1473 2160 116 0 0 chr6 119178744 119179029 -63236213 - AluSg SINE Alu -17 293 9 1909 133 33 39 chr6 119179048 119179367 -63235875 - MER45R DNA AcHobo -566 1015 696 2181 87 18 0 chr6 119179367 119179667 -63235575 - AluSg SINE Alu 0 305 1 1909 133 33 39 chr6 119179667 119179736 -63235506 - MER45R DNA AcHobo -885 696 628 1279 156 30 28 chr6 119179736 119180031 -63235211 - MLT2A2 LTR ERVL 0 453 256 370 245 132 0 chr6 119179993 119180099 -63235143 - MER45 DNA AcHobo -920 120 1 * 1281 180 66 76 chr6 119180197 119180288 -63234954 + MSTB LTR MaLR 86 176 -250 2290 110 3 0 chr6 119180288 119180588 -63234654 + AluSx SINE Alu 1 301 -11 1281 180 66 76 chr6 119180588 119180813 -63234429 + MSTB LTR MaLR 176 399 -27 2297 110 0 3 chr6 119180817 119181127 -63234115 - AluY SINE Alu -2 309 1 1266 136 0 0 chr6 119181169 119181346 -63233896 + AluSx SINE Alu 1 177 -135 204 40 0 0 chr6 119181372 119181397 -63233845 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 697 161 36 0 chr6 119181403 119181515 -63233727 - FLAM_C SINE Alu -15 118 3 682 227 21 57 chr6 119181541 119181735 -63233507 + MLT1D LTR MaLR 1 187 -318 1681 152 17 14 chr6 119181739 119182028 -63233214 + AluJo SINE Alu 1 290 -22 619 249 87 90 chr6 119182038 119182138 -63233104 - L1MEd LINE L1 -5279 840 741 1952 128 3 16 chr6 119182138 119182442 -63232800 - AluSq SINE Alu -9 304 5 619 249 87 90 chr6 119182442 119182476 -63232766 - L1MEd LINE L1 -5378 741 708 2263 91 0 14 chr6 119182476 119182772 -63232470 - AluSg SINE Alu -16 294 3 619 249 87 90 chr6 119182772 119182950 -63232292 - L1MEd LINE L1 -5411 708 526 1716 208 67 73 chr6 119182950 119183470 -63231772 - LTR40a LTR ERVL -2 517 1 619 249 87 90 chr6 119183470 119183501 -63231741 - L1MEd LINE L1 -5593 526 496 1978 150 0 0 chr6 119183525 119183845 -63231397 + AluSx SINE Alu 2 312 0 3682 76 4 4 chr6 119183927 119184412 -63230830 - LTR10E LTR ERV1 -148 485 1 1553 97 5 0 chr6 119184413 119184609 -63230633 + AluSp SINE Alu 100 296 -17 1255 130 56 78 chr6 119184682 119184952 -63230290 + MER21A LTR ERV1 1 264 -667 2466 135 60 22 chr6 119184957 119185371 -63229871 + MER21A LTR ERV1 376 805 -126 1209 94 6 0 chr6 119185454 119185613 -63229629 + AluSp SINE Alu 146 305 -8 191 35 0 35 chr6 119185975 119186004 -63229238 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1205 163 0 0 chr6 119186007 119186191 -63229051 - AluSg/x SINE Alu -31 279 96 286 206 110 0 chr6 119186195 119186268 -63228974 + MER21B LTR ERV1 764 844 -19 206 217 22 0 chr6 119186284 119186330 -63228912 + MIR SINE MIR 210 256 -6 1516 111 10 0 chr6 119186560 119186767 -63228475 + AluSq SINE Alu 1 209 -104 1842 142 3 3 chr6 119186768 119187050 -63228192 - AluSq SINE Alu -31 282 1 2301 100 7 0 chr6 119187230 119187520 -63227722 - AluSx SINE Alu -20 292 1 2077 133 3 3 chr6 119187544 119187846 -63227396 - AluSq SINE Alu -11 302 1 252 0 0 0 chr6 119187853 119187881 -63227361 + (TA)n Simple_repeat Simple_repeat 2 29 0 2337 117 0 0 chr6 119187885 119188194 -63227048 - AluSq SINE Alu 0 313 5 751 121 23 38 chr6 119188295 119188427 -63226815 - FLAM_C SINE Alu 0 143 14 1493 177 15 73 chr6 119188427 119188755 -63226487 - AluJo SINE Alu -3 309 1 211 0 0 81 chr6 119188939 119188976 -63226266 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 27 49 0 0 chr6 119189280 119189321 -63225921 + AT_rich Low_complexity Low_complexity 1 41 0 425 307 97 0 chr6 119189388 119189564 -63225678 - L1ME LINE L1 -429 5692 5500 1093 88 0 7 chr6 119189589 119189736 -63225506 - AluJb SINE Alu -5 307 162 2256 96 3 0 chr6 119189761 119190043 -63225199 - AluSq SINE Alu -30 283 1 1457 138 43 74 chr6 119190043 119190309 -63224933 + Charlie1 DNA MER1_type 2047 2303 -458 2657 47 0 0 chr6 119190309 119190605 -63224637 + AluY SINE Alu 1 296 -15 1457 138 43 74 chr6 119190605 119190664 -63224578 + Charlie1 DNA MER1_type 2303 2362 -399 2137 99 32 0 chr6 119190666 119190950 -63224292 - AluSc SINE Alu -16 293 1 732 203 0 8 chr6 119190956 119191084 -63224158 - FLAM_C SINE Alu -14 129 3 594 192 128 18 chr6 119191101 119191280 -63223962 + Charlie1 DNA MER1_type 2390 2599 -162 843 227 0 0 chr6 119191280 119191434 -63223808 - AluJo SINE Alu -12 290 137 594 192 128 18 chr6 119191434 119191473 -63223769 + Charlie1 DNA MER1_type 2599 2632 -129 1000 155 134 11 chr6 119191477 119191664 -63223578 + AluJb SINE Alu 84 293 -19 22 0 0 0 chr6 119191740 119191762 -63223480 + AT_rich Low_complexity Low_complexity 1 22 0 913 133 0 0 chr6 119191767 119191895 -63223347 - AluJo SINE Alu -184 128 1 22 35 0 0 chr6 119191990 119192019 -63223223 + AT_rich Low_complexity Low_complexity 1 29 0 197 357 61 0 chr6 119192368 119192466 -63222776 - L2 LINE L2 0 3272 3169 2333 99 0 10 chr6 119192506 119192818 -63222424 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 119192952 119192981 -63222261 + AT_rich Low_complexity Low_complexity 1 29 0 1819 161 0 49 chr6 119193176 119193322 -63221920 + AluJo SINE Alu 1 153 -159 2166 99 31 10 chr6 119193322 119193616 -63221626 + AluSg SINE Alu 1 300 -10 1819 161 0 49 chr6 119193616 119193793 -63221449 + AluJo SINE Alu 153 308 -4 859 174 0 0 chr6 119194032 119194170 -63221072 + FLAM_C SINE Alu 1 138 -5 2245 108 0 3 chr6 119194173 119194469 -63220773 - AluSg SINE Alu -15 295 1 923 146 0 40 chr6 119194656 119194807 -63220435 + AluJb SINE Alu 86 230 -82 2582 143 83 7 chr6 119194823 119195244 -63219998 - MER66A LTR ERV1 0 478 26 318 173 0 0 chr6 119195253 119195305 -63219937 + Alu SINE Alu 246 297 -5 2171 86 4 7 chr6 119195313 119195624 -63219618 + AluSc SINE Alu 1 310 0 251 243 77 95 chr6 119195628 119195761 -63219481 + HAL1 LINE L1 1433 1564 -943 1743 135 0 112 chr6 119195761 119195952 -63219290 - AluJb SINE Alu 0 302 164 2246 61 40 4 chr6 119195952 119196229 -63219013 - AluY SINE Alu -24 287 1 1743 135 0 112 chr6 119196229 119196377 -63218865 - AluJb SINE Alu -138 164 1 251 243 77 95 chr6 119196377 119196412 -63218830 + HAL1 LINE L1 1564 1598 -909 2267 97 7 0 chr6 119196449 119196737 -63218505 - AluSq SINE Alu -23 290 1 235 243 14 43 chr6 119196760 119196830 -63218412 - L2 LINE L2 -188 3084 3017 2189 118 3 10 chr6 119197165 119197478 -63217764 - AluSq SINE Alu -2 311 1 2340 100 0 0 chr6 119197844 119198144 -63217098 - AluSq SINE Alu -13 300 1 780 159 15 0 chr6 119198190 119198322 -63216920 + FLAM_C SINE Alu 7 140 -3 1562 221 50 50 chr6 119198460 119198635 -63216607 + MLT1C LTR MaLR 6 180 -287 2326 103 0 3 chr6 119198635 119198947 -63216295 + AluSq SINE Alu 1 311 -2 1562 221 50 50 chr6 119198947 119199233 -63216009 + MLT1C LTR MaLR 179 467 0 860 88 0 0 chr6 119199328 119199442 -63215800 - AluSg/x SINE Alu -3 307 194 1851 138 24 14 chr6 119199442 119199738 -63215504 - AluJo SINE Alu -10 302 4 1123 178 89 89 chr6 119200263 119200601 -63214641 + MER44D DNA MER2_type 1 608 -1 324 258 21 0 chr6 119200686 119200783 -63214459 + MIR SINE MIR 104 202 -60 27 0 0 0 chr6 119200920 119200947 -63214295 + AT_rich Low_complexity Low_complexity 1 27 0 4341 115 5 8 chr6 119201052 119201694 -63213548 - L1PB3 LINE L1 -7 6147 5508 735 203 16 0 chr6 119201695 119201877 -63213365 - L1 LINE L1 -1593 4553 4369 5620 168 36 103 chr6 119202031 119202503 -63212739 - L1 LINE L1 -1773 4373 3871 2236 110 3 3 chr6 119202503 119202794 -63212448 - AluSp SINE Alu -22 291 1 5620 168 36 103 chr6 119202794 119203429 -63211813 - L1 LINE L1 -2275 3871 3195 344 194 0 0 chr6 119203429 119203496 -63211746 - AluSp/q SINE Alu -29 274 208 * 397 116 6 6 chr6 119203465 119203536 -63211706 - Alu SINE Alu -244 55 1 * 5620 168 36 103 chr6 119203536 119203838 -63211404 - L1 LINE L1 -2991 3155 2958 180 0 0 0 chr6 119203873 119203893 -63211349 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2202 98 3 52 chr6 119203984 119204310 -63210932 - AluSg SINE Alu 0 310 1 2363 142 26 26 chr6 119204350 119204683 -63210559 + LTR48B LTR ERV1 1 336 -308 2075 117 0 52 chr6 119204683 119205007 -63210235 - AluSx SINE Alu -5 307 1 2363 142 26 26 chr6 119205007 119205090 -63210152 + LTR48B LTR ERV1 335 417 -227 2191 122 3 3 chr6 119205090 119205402 -63209840 + AluSp SINE Alu 1 312 -1 2933 168 37 26 chr6 119205402 119205968 -63209274 - MER41B LTR ERV1 -63 572 1 357 389 86 25 chr6 119205971 119206246 -63208996 + L2 LINE L2 2304 2618 -696 2242 112 3 0 chr6 119206246 119206551 -63208691 - AluSp SINE Alu -7 306 1 357 389 86 25 chr6 119206551 119206715 -63208527 + L2 LINE L2 2618 2770 -544 2735 100 27 36 chr6 119206715 119206802 -63208440 + LTR56 LTR ERV1 1 87 -358 1933 127 11 0 chr6 119206802 119207107 -63208135 + AluSx SINE Alu 14 321 0 2735 100 27 36 chr6 119207107 119207467 -63207775 + LTR56 LTR ERV1 87 445 0 2121 124 0 3 chr6 119208009 119208299 -63206943 - AluSg SINE Alu -21 289 1 473 214 159 39 chr6 119208558 119208740 -63206502 - LTR48 LTR ERV1 -3 784 581 718 168 16 0 chr6 119208740 119208865 -63206377 + FLAM_A SINE Alu 1 127 -6 709 222 73 78 chr6 119208866 119209243 -63205999 - MER34C LTR ERV1 -222 363 1 207 69 0 0 chr6 119210274 119210303 -63204939 + (GGA)n Simple_repeat Simple_repeat 1 29 0 34 0 0 0 chr6 119210351 119210385 -63204857 + GC_rich Low_complexity Low_complexity 1 34 0 189 0 0 0 chr6 119212793 119212814 -63202428 + (T)n Simple_repeat Simple_repeat 1 21 0 2464 57 0 7 chr6 119213205 119213502 -63201740 + AluY SINE Alu 1 295 -16 845 164 0 15 chr6 119213577 119213711 -63201531 - FLAM_C SINE Alu -11 132 1 538 162 216 18 chr6 119213766 119213877 -63201365 - FLAM_C SINE Alu 0 133 1 1045 91 42 0 chr6 119214079 119214222 -63201020 + AluSq/x SINE Alu 1 149 -163 380 274 36 8 chr6 119214495 119214621 -63200621 - MIR3 SINE MIR -43 165 24 2370 93 7 0 chr6 119214824 119215134 -63200108 - AluSp SINE Alu -1 312 1 1636 159 29 36 chr6 119216086 119216394 -63198848 - AluJo SINE Alu -6 306 1 2302 75 7 29 chr6 119216396 119216702 -63198540 - AluY SINE Alu -12 299 1 1076 209 45 27 chr6 119217062 119217282 -63197960 - MER58A DNA MER1_type 0 224 1 582 183 22 66 chr6 119217290 119217427 -63197815 + MER3 DNA MER1_type 1 131 -78 778 138 15 46 chr6 119217698 119217828 -63197414 + FRAM SINE Alu 44 169 -7 1970 141 7 10 chr6 119217866 119218172 -63197070 + AluSx SINE Alu 1 305 -7 262 191 0 0 chr6 119218344 119218386 -63196856 - AluJ SINE Alu -65 237 196 1112 194 14 37 chr6 119218392 119218609 -63196633 - AluJ SINE Alu -100 212 1 2105 131 3 10 chr6 119218618 119218931 -63196311 - AluSx SINE Alu -1 311 1 375 239 68 8 chr6 119219024 119219141 -63196101 - L1MC/D LINE L1 -2053 5755 5632 2203 107 3 3 chr6 119219271 119219569 -63195673 - AluSq SINE Alu -15 298 1 554 133 124 19 chr6 119219636 119219741 -63195501 - AluSp/q SINE Alu -13 300 185 24 32 0 0 chr6 119219846 119219877 -63195365 + AT_rich Low_complexity Low_complexity 1 31 0 395 138 0 0 chr6 119219944 119220002 -63195240 + Tigger2 DNA MER2_type 1 58 -2660 * 809 201 8 0 chr6 119220001 119220135 -63195107 - MER8 DNA MER2_type -99 140 6 2500 47 0 3 chr6 119220655 119220952 -63194290 - AluY SINE Alu -14 297 2 2253 78 10 26 chr6 119220981 119221288 -63193954 + AluSg SINE Alu 1 302 -8 1745 184 13 13 chr6 119221633 119221943 -63193299 - AluJb SINE Alu -2 310 1 2433 70 0 0 chr6 119222248 119222546 -63192696 + AluY SINE Alu 1 298 -13 432 226 0 82 chr6 119222596 119222755 -63192487 - HAL1 LINE L1 -112 2395 2250 5238 127 22 28 chr6 119222919 119223793 -63191449 - L1PA16 LINE L1 -5 6161 5293 2319 106 0 0 chr6 119223816 119224119 -63191123 + AluY SINE Alu 1 303 -8 1848 164 0 3 chr6 119224126 119224413 -63190829 - AluJo SINE Alu -14 298 13 5082 181 8 1 chr6 119224439 119225398 -63189844 - L1 LINE L1 -1767 4379 3414 407 221 0 0 chr6 119225655 119225723 -63189519 - MER2 DNA MER2_type 0 345 278 1678 182 3 26 chr6 119225724 119226032 -63189210 + AluJb SINE Alu 1 301 -11 1069 137 19 95 chr6 119226069 119226280 -63188962 - MER2 DNA MER2_type -150 195 1 414 259 99 48 chr6 119226416 119226456 -63188786 - HAL1b LINE L1 -681 1698 1662 1933 161 3 7 chr6 119226456 119226766 -63188476 - AluJb SINE Alu -3 309 1 414 259 99 48 chr6 119226766 119226973 -63188269 - HAL1b LINE L1 -717 1662 1467 2206 119 3 3 chr6 119226973 119227284 -63187958 - AluSq SINE Alu -2 311 1 414 259 99 48 chr6 119227284 119227347 -63187895 - HAL1b LINE L1 -912 1467 427 2480 87 0 0 chr6 119227612 119227924 -63187318 - AluSx SINE Alu 0 312 1 340 146 0 37 chr6 119228046 119228128 -63187114 + (TTTC)n Simple_repeat Simple_repeat 3 81 0 2353 97 0 0 chr6 119228268 119228567 -63186675 - AluSg SINE Alu -11 299 1 2233 107 3 7 chr6 119228600 119228900 -63186342 - AluSx SINE Alu -13 299 1 207 0 0 0 chr6 119228957 119228980 -63186262 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1452 207 19 4 chr6 119228985 119229256 -63185986 - AluJb SINE Alu -37 275 1 225 94 0 0 chr6 119229262 119229294 -63185948 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2069 102 4 4 chr6 119229294 119229569 -63185673 - AluSc SINE Alu -33 276 2 636 239 48 0 chr6 119229573 119229740 -63185502 + MER119 DNA MER1_type 408 582 -1 617 293 60 26 chr6 119229748 119230100 -63185142 - L1ME4a LINE L1 -254 5867 5504 1811 167 0 3 chr6 119230356 119230649 -63184593 + AluJb SINE Alu 1 292 -20 2317 78 3 10 chr6 119230924 119231220 -63184022 + AluSc SINE Alu 1 294 -15 2072 110 7 3 chr6 119231282 119231588 -63183654 + AluSx SINE Alu 1 307 0 344 301 119 38 chr6 119231647 119231883 -63183359 - MLT1J LTR MaLR -33 478 224 459 258 39 32 chr6 119232563 119232726 -63182516 + MIR SINE MIR 43 206 -56 1699 63 4 95 chr6 119232965 119233217 -63182025 + AluSx SINE Alu 46 274 -38 25 0 0 0 chr6 119233332 119233357 -63181885 + AT_rich Low_complexity Low_complexity 1 25 0 2391 88 0 13 chr6 119233358 119233663 -63181579 + AluSc SINE Alu 1 301 -8 1420 146 112 70 chr6 119233681 119233968 -63181274 + AluJo SINE Alu 1 299 -13 186 71 0 0 chr6 119234414 119234442 -63180800 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 2410 78 0 0 chr6 119234443 119234737 -63180505 - AluY SINE Alu -17 294 1 313 232 127 14 chr6 119234747 119234889 -63180353 - L1ME LINE L1 -301 5820 5663 2054 142 3 0 chr6 119235062 119235373 -63179869 - AluSx SINE Alu 0 312 1 1580 147 15 0 chr6 119235658 119235917 -63179325 + Tigger2 DNA MER2_type 1 263 -2455 774 174 38 23 chr6 119235918 119236050 -63179192 + AluJb SINE Alu 2 135 -177 2236 101 3 0 chr6 119236055 119236341 -63178901 + AluSc SINE Alu 6 292 -17 15009 128 27 37 chr6 119236341 119237169 -63178073 + Tigger2 DNA MER2_type 254 1089 -1629 1760 178 16 7 chr6 119237169 119237478 -63177764 + AluJo SINE Alu 1 312 0 2303 111 0 0 chr6 119237487 119237794 -63177448 + AluSx SINE Alu 1 307 -5 15009 128 27 37 chr6 119237794 119237885 -63177357 + Tigger2 DNA MER2_type 1097 1187 -1531 1546 164 29 15 chr6 119237885 119238159 -63177083 + AluJb SINE Alu 2 279 -33 211 0 88 0 chr6 119238168 119238202 -63177040 + A-rich Low_complexity Low_complexity 1 37 0 15009 128 27 37 chr6 119238202 119238234 -63177008 + Tigger2 DNA MER2_type 1195 1226 -1492 2195 119 0 7 chr6 119238234 119238537 -63176705 - AluSx SINE Alu -11 301 1 15009 128 27 37 chr6 119238537 119239617 -63175625 + Tigger2 DNA MER2_type 1226 2280 -438 2171 122 3 0 chr6 119239617 119239928 -63175314 - AluSp SINE Alu -1 312 1 15009 128 27 37 chr6 119239928 119240363 -63174879 + Tigger2 DNA MER2_type 2280 2718 0 180 0 0 0 chr6 119240532 119240552 -63174690 + (T)n Simple_repeat Simple_repeat 1 20 0 4171 161 65 49 chr6 119240553 119241444 -63173798 - L1MB7 LINE L1 -65 6119 5208 2281 118 3 0 chr6 119241444 119241749 -63173493 - AluSx SINE Alu -6 306 1 4171 161 65 49 chr6 119241749 119241958 -63173284 - L1MB7 LINE L1 -976 5208 5004 2216 131 0 0 chr6 119241966 119242271 -63172971 - AluSx SINE Alu -7 305 1 426 240 85 16 chr6 119242940 119243069 -63172173 - L1ME4a LINE L1 0 6121 5984 1718 176 27 3 chr6 119243770 119244066 -63171176 - AluJb SINE Alu -9 303 1 2599 162 33 5 chr6 119244130 119244550 -63170692 + MSTB1 LTR MaLR 1 432 0 283 156 0 0 chr6 119244914 119244959 -63170283 + L2 LINE L2 3258 3302 -11 32 0 0 0 chr6 119245116 119245148 -63170094 + AT_rich Low_complexity Low_complexity 1 32 0 2293 96 7 13 chr6 119245219 119245386 -63169856 - AluSx SINE Alu -11 301 135 2239 116 0 3 chr6 119245386 119245689 -63169553 - AluSc SINE Alu -7 302 1 2293 96 7 13 chr6 119245689 119245824 -63169418 - AluSx SINE Alu -177 135 1 928 148 0 0 chr6 119245858 119245993 -63169249 - AluJo SINE Alu -177 135 1 300 268 102 141 chr6 119246033 119246387 -63168855 - L2 LINE L2 -1 3271 2932 540 275 177 51 chr6 119246633 119246989 -63168253 - MLT1J LTR MaLR -110 401 1 4076 155 28 38 chr6 119247460 119248217 -63167025 - L1MB3 LINE L1 -1 6182 5434 718 215 146 5 chr6 119248585 119248790 -63166452 + MIR SINE MIR 12 245 -17 2274 116 0 0 chr6 119249169 119249480 -63165762 - AluSq SINE Alu -2 311 1 288 346 50 0 chr6 119249664 119249765 -63165477 - MIR SINE MIR -146 116 11 2447 85 3 0 chr6 119250355 119250661 -63164581 - AluSc SINE Alu -2 307 1 1851 172 3 0 chr6 119250663 119250959 -63164283 - AluJb SINE Alu -15 297 1 1236 183 68 40 chr6 119250991 119251242 -63164000 + Tigger7 DNA MER2_type 10 267 -2220 622 102 20 20 chr6 119251240 119251338 -63163904 + Tigger7 DNA MER2_type 2394 2491 0 * 2019 82 0 0 chr6 119252267 119252510 -63162732 - AluSc SINE Alu -14 295 53 901 152 0 0 chr6 119252560 119252692 -63162550 - FLAM_C SINE Alu 0 133 2 1367 198 8 0 chr6 119252719 119252971 -63162271 - AluJo SINE Alu -13 299 46 2512 109 8 17 chr6 119253138 119253496 -63161746 + THE1A LTR MaLR 1 355 0 12187 83 29 0 chr6 119253496 119255031 -63160211 + THE1A-int LTR MaLR 1 1580 0 2676 93 8 8 chr6 119255031 119255386 -63159856 + THE1A LTR MaLR 1 355 0 5905 134 38 25 chr6 119255922 119256027 -63159215 - L1MC2 LINE L1 -2 6342 6240 2294 105 0 0 chr6 119256027 119256344 -63158898 - AluSx SINE Alu 0 317 1 5905 134 38 25 chr6 119256344 119256451 -63158791 - L1MC2 LINE L1 -104 6240 6136 2285 105 7 7 chr6 119256451 119256756 -63158486 - AluSx SINE Alu -7 305 1 5905 134 38 25 chr6 119256756 119257581 -63157661 - L1MC2 LINE L1 -208 6136 5290 775 228 5 0 chr6 119257616 119257800 -63157442 - L1MC2 LINE L1 -834 5312 5128 1212 74 6 6 chr6 119257806 119257969 -63157273 - L1MA5 LINE L1 -3 6297 6135 1619 122 0 5 chr6 119257971 119258193 -63157049 + AluSx SINE Alu 1 221 -91 747 94 0 0 chr6 119258194 119258290 -63156952 - AluS SINE Alu -216 97 2 4425 182 49 48 chr6 119258291 119258457 -63156785 - L1MA5 LINE L1 -189 6111 5947 2082 121 7 10 chr6 119258457 119258774 -63156468 - AluSx SINE Alu 0 312 1 919 154 0 0 chr6 119258777 119258907 -63156335 - AluJo/FLAM SINE Alu -170 132 3 4425 182 49 48 chr6 119258907 119259026 -63156216 - L1MA5 LINE L1 -354 5946 5829 2028 140 0 10 chr6 119259026 119259334 -63155908 - AluSx SINE Alu -7 305 1 4425 182 49 48 chr6 119259334 119259933 -63155309 - L1MA5 LINE L1 -471 5829 5232 2349 81 0 14 chr6 119259933 119260230 -63155012 - AluSc SINE Alu -16 293 1 1391 194 151 0 chr6 119260232 119260490 -63154752 - AluJo SINE Alu -4 298 2 4425 182 49 48 chr6 119260490 119260643 -63154599 - L1MA5 LINE L1 -1068 5232 5081 2036 127 3 0 chr6 119260643 119260958 -63154284 - AluSq SINE Alu 0 316 1 4425 182 49 48 chr6 119260958 119261912 -63153330 - L1MA5 LINE L1 -1219 5081 4114 2246 100 7 0 chr6 119261912 119262212 -63153030 + AluSx SINE Alu 1 302 -10 4425 182 49 48 chr6 119262212 119262298 -63152944 - L1MA5 LINE L1 -2186 4114 4030 274 319 83 38 chr6 119262945 119263102 -63152140 - MIR SINE MIR -6 256 93 513 327 180 14 chr6 119263945 119264361 -63150881 + L2 LINE L2 2186 2670 -644 732 179 8 15 chr6 119264380 119264514 -63150728 + FLAM_A SINE Alu 1 133 0 821 201 18 112 chr6 119264706 119264896 -63150346 + MIR SINE MIR 11 217 -45 1795 172 3 3 chr6 119264896 119265181 -63150061 - AluJb SINE Alu -27 285 1 821 201 18 112 chr6 119265181 119265205 -63150037 + MIR SINE MIR 217 197 -65 2160 136 0 3 chr6 119265205 119265513 -63149729 - AluSx SINE Alu -5 307 1 821 201 18 112 chr6 119265513 119265575 -63149667 + MIR SINE MIR 196 262 0 258 203 17 0 chr6 119265991 119266050 -63149192 - FLAM SINE Alu -2 131 72 1617 158 0 38 chr6 119266050 119266175 -63149067 - AluJo SINE Alu -56 256 128 207 0 0 0 chr6 119266175 119266198 -63149044 + (TA)n Simple_repeat Simple_repeat 1 23 0 2454 74 0 16 chr6 119266198 119266508 -63148734 - AluY SINE Alu -6 305 1 1617 158 0 38 chr6 119266508 119266647 -63148595 - AluJo SINE Alu -182 130 1 22 70 0 0 chr6 119266651 119266694 -63148548 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr6 119266928 119266965 -63148277 + AT_rich Low_complexity Low_complexity 1 37 0 1715 171 4 4 chr6 119267438 119267718 -63147524 - AluJo SINE Alu -32 280 1 352 289 47 102 chr6 119267847 119268231 -63147011 - L1MC4 LINE L1 -74 7968 7606 263 219 0 24 chr6 119268914 119268996 -63146246 + (CATA)n Simple_repeat Simple_repeat 4 83 0 181 194 0 0 chr6 119268996 119269032 -63146210 - L2 LINE L2 -8 3305 3270 1734 130 33 65 chr6 119269058 119269223 -63146019 - AluSx SINE Alu -15 297 145 2133 126 0 0 chr6 119269223 119269508 -63145734 - AluSx SINE Alu -16 296 12 1734 130 33 65 chr6 119269508 119269649 -63145593 - AluSx SINE Alu -167 145 1 190 350 68 10 chr6 119269828 119269931 -63145311 + L2 LINE L2 2711 2819 -495 2279 111 3 0 chr6 119270287 119270585 -63144657 + AluSq SINE Alu 1 299 -14 343 294 59 10 chr6 119270643 119270745 -63144497 + L2 LINE L2 3163 3269 -3 2202 102 0 7 chr6 119270847 119271142 -63144100 + AluSc SINE Alu 1 293 -16 1943 156 3 13 chr6 119271294 119271596 -63143646 + AluJb SINE Alu 1 299 -13 1752 166 17 10 chr6 119271941 119272237 -63143005 + AluJb SINE Alu 1 298 -14 1818 167 3 3 chr6 119272397 119272720 -63142522 + AluJb SINE Alu 1 312 0 765 180 16 0 chr6 119272769 119272891 -63142351 + FLAM_C SINE Alu 10 133 -10 392 214 120 0 chr6 119273253 119273370 -63141872 + L1MC5 LINE L1 7723 7853 -108 29 78 0 0 chr6 119273388 119273452 -63141790 + AT_rich Low_complexity Low_complexity 1 64 0 3675 131 15 4 chr6 119273945 119274463 -63140779 - MER1A DNA MER1_type 0 527 4 2131 114 10 3 chr6 119274493 119274790 -63140452 + AluSx SINE Alu 1 299 -13 261 258 32 43 chr6 119275266 119275359 -63139883 + MIR3 SINE MIR 104 195 -13 2339 85 3 0 chr6 119275557 119275850 -63139392 + AluSg SINE Alu 1 294 -16 1602 168 51 0 chr6 119275971 119276245 -63138997 + AluJb SINE Alu 5 292 -20 24 53 0 0 chr6 119279552 119279590 -63135652 + AT_rich Low_complexity Low_complexity 1 38 0 1577 152 72 18 chr6 119279655 119279932 -63135310 - AluJo SINE Alu -10 302 11 23 33 0 0 chr6 119280056 119280086 -63135156 + AT_rich Low_complexity Low_complexity 1 30 0 520 214 57 7 chr6 119280315 119280455 -63134787 - MIR SINE MIR 0 262 116 27 62 0 0 chr6 119280580 119280628 -63134614 + AT_rich Low_complexity Low_complexity 1 48 0 368 244 165 9 chr6 119280901 119281016 -63134226 + L2 LINE L2 3140 3272 0 899 176 18 18 chr6 119281072 119281237 -63134005 - FRAM SINE Alu -10 166 2 366 141 0 31 chr6 119281318 119281382 -63133860 + AluS SINE Alu 1 62 -241 2014 142 14 3 chr6 119282019 119282315 -63132927 + AluJb SINE Alu 3 301 -11 1277 153 53 0 chr6 119282524 119282733 -63132509 - AluJb SINE Alu -7 305 86 811 132 47 16 chr6 119282745 119282874 -63132368 - FLAM_C SINE Alu -10 133 1 1899 121 41 10 chr6 119283391 119283681 -63131561 + AluSx SINE Alu 1 299 -13 2083 114 0 17 chr6 119283780 119284078 -63131164 - AluSg SINE Alu -17 293 1 292 310 60 0 chr6 119284090 119284190 -63131052 - L2 LINE L2 -1 3312 3207 272 362 72 24 chr6 119284568 119284775 -63130467 + L2 LINE L2 2836 3052 -220 2309 91 7 0 chr6 119284796 119285092 -63130150 - AluSg SINE Alu -12 298 1 2184 132 3 0 chr6 119285880 119286191 -63129051 - AluSx SINE Alu 0 312 1 446 156 57 113 chr6 119286635 119286695 -63128547 - MIR SINE MIR -56 206 144 2333 46 0 14 chr6 119286695 119287003 -63128239 - AluY SINE Alu 0 307 4 446 156 57 113 chr6 119287003 119287082 -63128160 - MIR SINE MIR -118 144 74 1837 128 24 7 chr6 119287108 119287398 -63127844 + AluJb SINE Alu 1 295 -17 488 260 110 26 chr6 119288113 119288340 -63126902 - MIR SINE MIR -16 246 1 2283 60 0 3 chr6 119288886 119289202 -63126040 + AluSx SINE Alu 1 315 0 184 214 0 24 chr6 119289400 119289442 -63125800 + L2 LINE L2 3215 3255 -17 2296 134 46 50 chr6 119289480 119289883 -63125359 - L1MB7 LINE L1 -25 6159 5757 1974 134 10 3 chr6 119289883 119290173 -63125069 - AluSx SINE Alu -19 293 2 2296 134 46 50 chr6 119290173 119290224 -63125018 - L1MB7 LINE L1 -427 5757 5707 1006 149 0 7 chr6 119290224 119290418 -63124824 - AluSc SINE Alu 0 326 134 898 159 82 6 chr6 119290418 119290588 -63124654 - L1MB7 LINE L1 -479 5705 5523 1757 186 149 28 chr6 119290590 119290692 -63124550 - MLT1D LTR MaLR -1 504 416 1912 126 14 0 chr6 119290692 119291011 -63124231 + AluY SINE Alu 1 323 0 1757 186 149 28 chr6 119291011 119291335 -63123907 - MLT1D LTR MaLR -89 416 24 2890 243 54 31 chr6 119291369 119292290 -63122952 - L1MB7 LINE L1 -656 5528 4600 1607 189 26 29 chr6 119292297 119292610 -63122632 - AluJo SINE Alu 0 312 1 1582 203 40 3 chr6 119292614 119292994 -63122248 - L1MB7 LINE L1 -2168 3978 3585 2421 81 0 0 chr6 119293058 119293354 -63121888 - AluSg SINE Alu -14 296 1 990 140 0 24 chr6 119293900 119294064 -63121178 + AluSq SINE Alu 33 192 -121 1667 150 114 78 chr6 119294066 119294347 -63120895 + MLT1D LTR MaLR 106 406 -99 1966 105 54 24 chr6 119294347 119294641 -63120601 - AluSg SINE Alu -7 303 1 1667 150 114 78 chr6 119294641 119294745 -63120497 + MLT1D LTR MaLR 406 505 0 1938 149 0 7 chr6 119294880 119295181 -63120061 + AluJb SINE Alu 1 299 -13 2343 79 0 3 chr6 119295625 119295916 -63119326 - AluY SINE Alu -21 290 1 2326 73 13 3 chr6 119295979 119296280 -63118962 - AluY SINE Alu -7 304 1 2079 121 3 32 chr6 119296280 119296455 -63118787 - AluJb SINE Alu -4 308 144 2623 33 0 7 chr6 119296455 119296760 -63118482 - AluYa5 SINE Alu -8 303 1 2079 121 3 32 chr6 119296760 119296899 -63118343 - AluJb SINE Alu -168 144 3 472 161 11 23 chr6 119296975 119297062 -63118180 + FLAM_C SINE Alu 33 118 -25 30 27 0 0 chr6 119297062 119297099 -63118143 + AT_rich Low_complexity Low_complexity 1 37 0 840 172 16 0 chr6 119297415 119297543 -63117699 - FLAM_C SINE Alu -12 131 2 2314 97 0 7 chr6 119297588 119297897 -63117345 + AluSx SINE Alu 1 307 -5 258 195 207 12 chr6 119297903 119297985 -63117257 - MLT1J LTR MaLR 0 511 414 1800 151 33 10 chr6 119298431 119298736 -63116506 - AluJb SINE Alu 0 312 1 312 220 110 131 chr6 119298922 119299113 -63116129 - MLT1J LTR MaLR -148 363 177 208 139 0 0 chr6 119299114 119299150 -63116092 + (T)n Simple_repeat Simple_repeat 1 36 0 355 227 13 0 chr6 119299154 119299229 -63116013 - MLT1J LTR MaLR -323 188 113 244 214 12 60 chr6 119299239 119299323 -63115919 - MLT1L LTR MaLR -535 80 1 1005 139 36 12 chr6 119299390 119299555 -63115687 + AluSp SINE Alu 133 301 -12 1741 172 21 0 chr6 119299670 119299960 -63115282 + AluJb SINE Alu 1 296 -16 333 224 13 26 chr6 119300062 119300138 -63115104 - MER116 DNA Mariner -1 79 5 468 139 28 74 chr6 119300285 119300393 -63114849 + MLT1E2 LTR MaLR 1 103 -523 2107 116 3 23 chr6 119300395 119300705 -63114537 - AluSx SINE Alu -8 304 1 1725 155 0 18 chr6 119300853 119301137 -63114105 + AluJo SINE Alu 21 299 -13 2497 70 0 0 chr6 119301140 119301438 -63113804 + AluY SINE Alu 1 298 -13 1436 254 87 48 chr6 119301438 119301468 -63113774 + MLT1E2 LTR MaLR 105 132 -494 2298 72 7 7 chr6 119301468 119301760 -63113482 + AluY SINE Alu 1 292 -19 1436 254 87 48 chr6 119301760 119302226 -63113016 + MLT1E2 LTR MaLR 132 620 -6 2308 72 24 0 chr6 119302301 119302594 -63112648 - AluY SINE Alu -11 300 1 1462 201 10 17 chr6 119302597 119302896 -63112346 - AluJo SINE Alu -15 297 1 2099 114 7 3 chr6 119303729 119304019 -63111223 - AluSx SINE Alu -19 293 3 2814 185 63 32 chr6 119304290 119304404 -63110838 + MLT1F LTR MaLR 3 112 -430 2241 111 0 10 chr6 119304404 119304702 -63110540 - AluSx SINE Alu -17 295 1 2814 185 63 32 chr6 119304702 119305111 -63110131 + MLT1F LTR MaLR 112 542 0 1681 123 3 94 chr6 119305640 119305760 -63109482 + AluSx SINE Alu 23 152 -160 2313 94 7 7 chr6 119305760 119306067 -63109175 + AluSp SINE Alu 1 307 -6 1681 123 3 94 chr6 119306067 119306255 -63108987 + AluSx SINE Alu 152 303 -9 1121 175 52 9 chr6 119306293 119306354 -63108888 + AluSg/x SINE Alu 71 128 -184 2268 114 10 0 chr6 119306354 119306660 -63108582 + AluSg SINE Alu 1 309 -1 1121 175 52 9 chr6 119306660 119306809 -63108433 + AluSg/x SINE Alu 128 290 -22 2218 107 7 0 chr6 119306892 119307190 -63108052 + AluSx SINE Alu 1 300 -12 602 186 0 0 chr6 119307326 119307428 -63107814 - U13 snRNA snRNA -2 102 1 1727 137 27 43 chr6 119307677 119307816 -63107426 + AluSx SINE Alu 1 141 -171 2212 97 0 7 chr6 119307816 119308124 -63107118 + AluSc SINE Alu 1 306 -3 1727 137 27 43 chr6 119308124 119308283 -63106959 + AluSx SINE Alu 141 294 -18 2263 94 7 3 chr6 119308690 119308988 -63106254 + AluSq SINE Alu 1 299 -14 329 222 28 0 chr6 119309331 119309403 -63105839 + L1ME LINE L1 5503 5576 -594 283 77 0 0 chr6 119309404 119309443 -63105799 + MER41B LTR ERV1 481 519 -116 2267 101 0 0 chr6 119309443 119309731 -63105511 + AluSx SINE Alu 1 288 -24 251 236 0 0 chr6 119309741 119309796 -63105446 + L1M4 LINE L1 4487 4541 -1605 186 43 0 0 chr6 119309836 119309859 -63105383 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 742 176 0 32 chr6 119309878 119310003 -63105239 + FLAM_C SINE Alu 13 133 -10 1439 90 9 69 chr6 119310003 119310180 -63105062 + Tigger4(Zombi) DNA MER2_type 2513 2674 -57 2136 134 0 0 chr6 119310180 119310472 -63104770 - AluSx SINE Alu -20 292 1 1439 90 9 69 chr6 119310472 119310527 -63104715 + Tigger4(Zombi) DNA MER2_type 2674 2731 0 21 57 0 0 chr6 119310555 119310590 -63104652 + AT_rich Low_complexity Low_complexity 1 35 0 2365 88 7 0 chr6 119310597 119310892 -63104350 + AluSg SINE Alu 1 297 -13 2214 121 7 0 chr6 119310902 119311200 -63104042 + AluSx SINE Alu 1 300 -12 678 220 8 0 chr6 119311412 119311568 -63103674 - L1MD2 LINE L1 -349 5815 5680 859 225 222 18 chr6 119311576 119312075 -63103167 - L1MD2 LINE L1 -704 5458 4820 2124 126 10 0 chr6 119312075 119312369 -63102873 - AluSx SINE Alu -4 308 12 859 225 222 18 chr6 119312369 119312490 -63102752 - L1MD2 LINE L1 -1342 4820 4725 204 40 0 0 chr6 119312608 119312633 -63102609 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 1957 103 22 7 chr6 119312639 119312911 -63102331 - AluSq SINE Alu -37 276 1 251 189 189 11 chr6 119312915 119313010 -63102232 - L1MD2 LINE L1 -1712 4434 4323 225 182 164 0 chr6 119313060 119313115 -63102127 - L1MD2 LINE L1 -1992 4154 4091 238 260 57 101 chr6 119313278 119313350 -63101892 - L1MD2 LINE L1 -2054 4092 4018 1667 158 53 0 chr6 119313350 119313635 -63101607 - AluJb SINE Alu -12 300 1 238 260 57 101 chr6 119313635 119313789 -63101453 - L1MD2 LINE L1 -2128 4018 3876 437 52 0 0 chr6 119313883 119313941 -63101301 + MER41A LTR ERV1 409 466 -88 2162 103 3 3 chr6 119313995 119314286 -63100956 + AluSg SINE Alu 1 291 -19 238 219 31 16 chr6 119314286 119314350 -63100892 - MIR SINE MIR -159 103 39 2090 128 3 3 chr6 119314509 119314813 -63100429 - AluSx SINE Alu -8 304 1 2063 118 7 10 chr6 119314894 119315183 -63100059 + AluSx SINE Alu 7 294 -18 648 203 16 0 chr6 119315936 119316064 -63099178 - FLAM_C SINE Alu -3 130 1 757 274 106 26 chr6 119316332 119316719 -63098523 + L2 LINE L2 2836 3253 -60 620 221 20 27 chr6 119316726 119316875 -63098367 + MLT1F LTR MaLR 15 162 -380 262 290 14 0 chr6 119316869 119316938 -63098304 + MLT1F LTR MaLR 319 388 -154 * 1789 181 31 3 chr6 119316979 119317305 -63097937 - L1MC1 LINE L1 -13 6320 5986 41654 66 9 3 chr6 119317340 119323074 -63092168 + L1PA5 LINE L1 2 5781 -373 2228 96 0 0 chr6 119323074 119323384 -63091858 + AluY SINE Alu 1 310 0 41654 66 9 3 chr6 119323384 119323761 -63091481 + L1PA5 LINE L1 5781 6154 0 2200 123 0 3 chr6 119323817 119324119 -63091123 + AluSx SINE Alu 1 301 -11 315 225 19 159 chr6 119324124 119324192 -63091050 + MIR SINE MIR 30 106 -156 2372 67 7 7 chr6 119324192 119324491 -63090751 - AluY SINE Alu -12 299 1 315 225 19 159 chr6 119324491 119324693 -63090549 + MIR SINE MIR 106 262 0 634 217 19 25 chr6 119324854 119325011 -63090231 - AluJo SINE Alu -35 277 122 246 32 0 0 chr6 119325013 119325044 -63090198 + (TTA)n Simple_repeat Simple_repeat 1 31 0 2235 76 0 33 chr6 119325056 119325358 -63089884 + AluSc SINE Alu 3 294 -15 1691 137 0 56 chr6 119325525 119325810 -63089432 - AluJb SINE Alu -43 269 1 443 144 11 14 chr6 119325872 119325969 -63089273 + L1ME1 LINE L1 5389 5482 -692 1952 147 72 44 chr6 119325973 119326340 -63088902 + L1MB8 LINE L1 5730 6085 -93 2299 106 0 3 chr6 119326340 119326643 -63088599 - AluSq SINE Alu -11 302 1 1906 167 3 0 chr6 119326644 119326949 -63088293 - AluSx SINE Alu -6 306 1 1952 147 72 44 chr6 119326949 119327009 -63088233 + L1MB8 LINE L1 6084 6171 -7 1438 173 85 53 chr6 119327017 119327124 -63088118 + L1ME1 LINE L1 5474 5576 -590 2278 89 3 10 chr6 119327124 119327426 -63087816 + AluSx SINE Alu 1 300 -12 1438 173 85 53 chr6 119327426 119327659 -63087583 + L1ME1 LINE L1 5576 5825 -341 522 293 15 42 chr6 119327440 119327699 -63087543 + L1PA8A LINE L1 5612 5863 -268 * 269 282 28 0 chr6 119327673 119327744 -63087498 + L1MD2 LINE L1 6007 6079 -280 * 798 150 0 23 chr6 119327771 119327904 -63087338 + FLAM_C SINE Alu 4 133 0 430 179 13 0 chr6 119327932 119328010 -63087232 + AluJb SINE Alu 208 286 -26 1984 74 93 0 chr6 119328021 119328279 -63086963 + AluSq SINE Alu 17 298 -15 1083 148 0 0 chr6 119328281 119328436 -63086806 + AluSp SINE Alu 133 287 -26 734 196 23 82 chr6 119328443 119328567 -63086675 - L1MD2 LINE L1 -59 6300 6170 1938 127 7 7 chr6 119328567 119328850 -63086392 - AluSx SINE Alu -18 294 12 734 196 23 82 chr6 119328850 119328888 -63086354 - L1MD2 LINE L1 -189 6170 6152 2387 96 3 0 chr6 119328888 119329190 -63086052 - AluSp SINE Alu -10 303 1 734 196 23 82 chr6 119329190 119329245 -63085997 - L1MD2 LINE L1 -207 6152 6095 587 192 39 31 chr6 119329250 119329380 -63085862 + FLAM_C SINE Alu 3 133 0 589 209 74 18 chr6 119329382 119329545 -63085697 + L1MA10 LINE L1 6163 6334 0 2059 75 60 4 chr6 119329550 119329844 -63085398 + AluY SINE Alu 1 309 0 261 319 37 37 chr6 119330092 119330227 -63085015 + L2 LINE L2 3169 3303 -10 526 83 0 0 chr6 119330500 119330601 -63084641 - FLAM_A SINE Alu 0 145 45 185 156 0 22 chr6 119330944 119330989 -63084253 + GA-rich Low_complexity Low_complexity 1 44 0 1383 116 0 82 chr6 119331120 119331352 -63083890 + AluSq SINE Alu 99 311 -2 719 261 50 25 chr6 119331524 119331765 -63083477 - MIR SINE MIR -1 261 15 1906 138 24 0 chr6 119332010 119332301 -63082941 - AluJo SINE Alu -14 298 1 365 233 0 92 chr6 119332311 119332431 -63082811 - L2 LINE L2 -21 3292 3184 2120 131 7 0 chr6 119332682 119332979 -63082263 - AluSx SINE Alu -13 299 1 2336 92 7 0 chr6 119333014 119333307 -63081935 + AluSp SINE Alu 2 296 -17 252 0 0 0 chr6 119333338 119333366 -63081876 + (CA)n Simple_repeat Simple_repeat 2 29 0 1260 105 29 0 chr6 119334112 119334284 -63080958 - AluSq SINE Alu -20 293 117 370 161 0 0 chr6 119334380 119334442 -63080800 - Alu SINE Alu 0 300 239 1111 90 0 0 chr6 119335633 119335766 -63079476 - AluSg1 SINE Alu -176 133 1 1364 153 118 16 chr6 119335780 119336034 -63079208 - AluJo SINE Alu -24 288 9 3174 113 15 13 chr6 119336066 119336543 -63078699 - MER9 LTR ERVK 0 511 34 33171 82 5 20 chr6 119336550 119341283 -63073959 - HERVK9 LTR ERVK 0 8032 1348 4433 97 8 19 chr6 119341284 119341902 -63073340 - HERVK9 LTR ERVK -5305 611 1 3359 100 34 8 chr6 119341902 119342400 -63072842 - MER9 LTR ERVK 0 511 1 216 0 0 0 chr6 119342416 119342440 -63072802 + (TA)n Simple_repeat Simple_repeat 1 24 0 2108 113 61 0 chr6 119342440 119342733 -63072509 - AluSq SINE Alu -2 311 1 596 206 75 19 chr6 119342738 119342898 -63072344 - L1MA10 LINE L1 0 6334 6166 587 192 39 31 chr6 119342901 119343031 -63072211 - FLAM_C SINE Alu 0 133 3 235 54 108 0 chr6 119343036 119343073 -63072169 + L1MD2 LINE L1 6095 6135 -224 324 0 0 0 chr6 119343257 119343293 -63071949 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr6 119343421 119343443 -63071799 + AT_rich Low_complexity Low_complexity 1 22 0 1693 183 0 0 chr6 119343443 119343727 -63071515 - AluJb SINE Alu -28 284 1 1736 166 7 30 chr6 119344339 119344640 -63070602 - AluJb SINE Alu -18 294 1 336 138 35 0 chr6 119344647 119344705 -63070537 - AluSp/q SINE Alu -3 300 241 1915 107 0 37 chr6 119344731 119345001 -63070241 - AluSq SINE Alu -43 270 11 1812 161 4 0 chr6 119345315 119345623 -63069619 - AluSx SINE Alu 0 309 1 2566 132 61 82 chr6 119345833 119345982 -63069260 - MER50 LTR ERV1 -23 711 560 1833 115 97 0 chr6 119345982 119346251 -63068991 + AluSx SINE Alu 1 295 -17 2566 132 61 82 chr6 119346251 119346410 -63068832 - MER50 LTR ERV1 -174 560 399 2338 107 0 16 chr6 119346410 119346727 -63068515 - AluSx SINE Alu 0 312 1 2566 132 61 82 chr6 119346727 119346941 -63068301 - MER50 LTR ERV1 -335 399 199 468 204 0 0 chr6 119346942 119347030 -63068212 - AluS SINE Alu -224 89 2 901 160 23 34 chr6 119347159 119347334 -63067908 + MER50 LTR ERV1 1 173 -561 1041 148 0 0 chr6 119347337 119347486 -63067756 + AluSg/x SINE Alu 153 301 -11 1240 236 0 0 chr6 119347534 119347771 -63067471 - MER45B DNA AcHobo -544 496 260 344 233 22 22 chr6 119347961 119348051 -63067191 + MIR3 SINE MIR 91 180 -28 1522 116 4 52 chr6 119348619 119348869 -63066373 - AluJb SINE Alu -3 309 72 195 324 68 40 chr6 119349223 119349371 -63065871 - MIR SINE MIR -61 201 50 244 333 24 24 chr6 119349655 119349778 -63065464 + MIR SINE MIR 32 154 -108 1829 141 18 0 chr6 119349890 119350166 -63065076 - AluJb SINE Alu -2 310 30 631 158 0 0 chr6 119350399 119350500 -63064742 + FLAM_C SINE Alu 16 116 -27 2207 126 0 0 chr6 119350520 119350821 -63064421 + AluSx SINE Alu 1 301 -11 1806 160 31 3 chr6 119350862 119351155 -63064087 - AluJo SINE Alu -11 301 1 2235 97 24 0 chr6 119351296 119351584 -63063658 - AluSq SINE Alu -18 295 1 1218 122 0 12 chr6 119351832 119352004 -63063238 - AluSg/x SINE Alu -31 281 112 1093 181 5 20 chr6 119352143 119352347 -63062895 + AluJo SINE Alu 82 282 -30 2274 103 0 0 chr6 119352354 119352635 -63062607 - AluSq SINE Alu -32 281 1 2307 110 0 3 chr6 119352696 119353004 -63062238 - AluSg SINE Alu -3 307 1 464 201 98 71 chr6 119353004 119353072 -63062170 - MER112 DNA MER1_type -68 192 127 1827 103 31 103 chr6 119353072 119353391 -63061851 - AluSx SINE Alu -16 296 1 464 201 98 71 chr6 119353391 119353506 -63061736 - MER112 DNA MER1_type -133 127 4 1369 150 51 68 chr6 119354148 119354335 -63060907 - AluJb SINE Alu -4 308 126 1941 123 38 3 chr6 119354335 119354628 -63060614 - AluSx SINE Alu -9 303 1 1369 150 51 68 chr6 119354628 119354734 -63060508 - AluJb SINE Alu -186 126 20 455 231 91 8 chr6 119354836 119354957 -63060285 - FLAM_C SINE Alu -11 132 2 2002 139 7 7 chr6 119354969 119355264 -63059978 - AluSx SINE Alu -17 295 1 21 36 0 0 chr6 119355322 119355350 -63059892 + AT_rich Low_complexity Low_complexity 1 28 0 1741 147 3 57 chr6 119355352 119355519 -63059723 - AluJo SINE Alu -29 283 137 1625 108 123 11 chr6 119355519 119355779 -63059463 + AluSg1 SINE Alu 1 289 -20 1741 147 3 57 chr6 119355779 119355910 -63059332 - AluJo SINE Alu -175 137 1 216 86 0 0 chr6 119355970 119356005 -63059237 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 577 122 131 19 chr6 119356171 119356278 -63058964 + FLAM_A SINE Alu 13 131 -11 2218 131 0 6 chr6 119356390 119356704 -63058538 + AluSx SINE Alu 1 312 0 25 0 0 0 chr6 119356969 119356994 -63058248 + AT_rich Low_complexity Low_complexity 1 25 0 816 84 0 9 chr6 119356997 119357104 -63058138 - U6 snRNA snRNA -1 106 1 2153 117 3 23 chr6 119357626 119357793 -63057449 - AluSx SINE Alu -11 301 141 2345 76 3 0 chr6 119357793 119358081 -63057161 - AluY SINE Alu -22 289 1 2153 117 3 23 chr6 119358081 119358220 -63057022 - AluSx SINE Alu -171 141 1 207 269 90 0 chr6 119358253 119358320 -63056922 - MIR SINE MIR -29 233 161 1777 181 10 3 chr6 119358397 119358700 -63056542 - AluJb SINE Alu -7 305 1 1839 164 23 16 chr6 119358843 119359153 -63056089 - AluJo SINE Alu 0 312 1 243 255 209 39 chr6 119359685 119359838 -63055404 - MIR SINE MIR -64 198 20 1789 154 50 7 chr6 119360017 119360316 -63054926 - AluSx SINE Alu 0 312 1 1703 173 27 13 chr6 119360890 119361191 -63054051 - AluJo SINE Alu -7 305 1 374 298 48 0 chr6 119361265 119361389 -63053853 - MIR SINE MIR -109 153 24 2086 149 0 0 chr6 119361389 119361697 -63053545 - AluSx SINE Alu -4 308 1 873 150 0 0 chr6 119362582 119362709 -63052533 + FLAM_C SINE Alu 1 127 -16 2154 114 13 10 chr6 119362853 119363159 -63052083 - AluY SINE Alu -4 307 1 180 298 0 0 chr6 119363415 119363462 -63051780 + MIR SINE MIR 102 148 -114 1138 175 194 16 chr6 119363552 119363804 -63051438 - AluJb SINE Alu -4 298 2 1943 145 10 13 chr6 119365038 119365341 -63049901 + AluSx SINE Alu 1 302 -10 10492 39 8 127 chr6 119365411 119366971 -63048271 - SVA Other Other -1 1385 11 307 249 132 56 chr6 119367031 119367244 -63047998 + Tigger8 DNA MER2_type 35 263 -403 * 659 201 87 63 chr6 119367213 119367467 -63047775 - Tigger8 DNA MER2_type -180 486 227 1294 172 47 47 chr6 119367661 119367957 -63047285 + AluSx SINE Alu 1 296 -16 526 130 0 0 chr6 119367957 119368034 -63047208 + AluSg/x SINE Alu 132 208 -102 860 184 14 0 chr6 119368035 119368182 -63047060 + AluSg/x SINE Alu 149 297 -13 1896 117 46 0 chr6 119368201 119368482 -63046760 + AluSq SINE Alu 19 312 -1 1026 114 0 7 chr6 119368482 119368631 -63046611 + Tigger4(Zombi) DNA MER2_type 2544 2691 -40 2367 99 0 13 chr6 119368632 119368945 -63046297 - AluY SINE Alu -2 309 1 693 147 18 0 chr6 119368953 119369062 -63046180 - AluSg/x SINE Alu -20 290 180 2170 102 41 0 chr6 119369307 119369602 -63045640 + AluSx SINE Alu 1 307 -5 2063 137 0 13 chr6 119369612 119369925 -63045317 + AluSc SINE Alu 1 309 0 252 261 139 9 chr6 119370271 119370386 -63044856 + MIR3 SINE MIR 46 175 -33 225 183 0 50 chr6 119371363 119371423 -63043819 + L1MA4 LINE L1 6238 6294 -6 2379 85 3 3 chr6 119371619 119371926 -63043316 - AluSx SINE Alu -5 307 1 2489 54 3 3 chr6 119372433 119372727 -63042515 + AluY SINE Alu 1 294 -17 2307 73 28 0 chr6 119373159 119373448 -63041794 + AluY SINE Alu 1 297 -14 407 179 343 0 chr6 119373852 119373986 -63041256 + MER5A DNA MER1_type 4 183 -6 1434 209 21 11 chr6 119374942 119375229 -63040013 - AluJo SINE Alu -21 291 2 955 109 66 0 chr6 119375541 119375678 -63039564 - AluSq SINE Alu -66 247 102 2044 123 31 0 chr6 119377488 119377781 -63037461 - AluSx SINE Alu -10 302 1 1514 186 7 4 chr6 119377830 119378104 -63037138 - AluJo SINE Alu -37 275 1 2371 44 55 3 chr6 119378159 119378452 -63036790 + AluY SINE Alu 1 308 -3 273 315 94 34 chr6 119379943 119380092 -63035150 + L3 LINE CR1 235 392 -1185 2283 168 40 24 chr6 119380105 119380163 -63035079 - MER65C LTR ERV1 -1 460 404 2949 160 62 49 chr6 119380163 119380268 -63034974 - LTR26E LTR ERV1 0 622 520 1960 172 0 0 chr6 119380268 119380576 -63034666 + AluSx SINE Alu 1 308 -4 2949 160 62 49 chr6 119380576 119380801 -63034441 - LTR26E LTR ERV1 -102 520 299 1425 168 66 21 chr6 119380801 119381087 -63034155 - AluJo SINE Alu -13 299 1 2949 160 62 49 chr6 119381087 119381369 -63033873 - LTR26E LTR ERV1 -323 299 1 2283 168 40 24 chr6 119381369 119381763 -63033479 - MER65C LTR ERV1 -57 404 1 2281 102 3 6 chr6 119381883 119382196 -63033046 - AluSx SINE Alu 0 312 1 227 178 123 55 chr6 119382283 119382356 -63032886 - L1ME4a LINE L1 -69 6052 5975 3415 158 18 67 chr6 119382417 119383134 -63032108 - LTR8 LTR ERV1 -8 683 2 812 176 44 0 chr6 119383135 119383271 -63031971 + FAM SINE Alu 30 171 -14 1405 191 77 18 chr6 119383274 119383547 -63031695 + AluJo SINE Alu 1 289 -23 2042 129 0 7 chr6 119383600 119383886 -63031356 + AluSx SINE Alu 1 284 -28 357 240 74 109 chr6 119383976 119384077 -63031165 - L1ME3A LINE L1 -20 6150 6056 1606 120 74 21 chr6 119384077 119384360 -63030882 + L1PA16 LINE L1 5868 6165 -1 357 240 74 109 chr6 119384360 119384433 -63030809 - L1ME3A LINE L1 -114 6056 5982 1663 166 58 0 chr6 119384451 119384729 -63030513 - AluJb SINE Alu -18 294 1 403 254 69 17 chr6 119384732 119384905 -63030337 - L1ME3A LINE L1 -232 5889 5708 2440 94 0 0 chr6 119384919 119385227 -63030015 - AluSg SINE Alu -2 308 1 351 267 56 43 chr6 119385249 119385448 -63029794 - MIR SINE MIR -50 212 17 * 447 303 49 45 chr6 119385436 119385680 -63029562 + L3 LINE CR1 433 677 -900 288 254 231 23 chr6 119385942 119386115 -63029127 + L3 LINE CR1 1022 1230 -347 27 49 0 0 chr6 119386150 119386191 -63029051 + AT_rich Low_complexity Low_complexity 1 41 0 814 161 0 0 chr6 119386191 119386309 -63028933 - FLAM_C SINE Alu -25 118 1 1787 240 56 17 chr6 119386309 119386826 -63028416 - L1ME1 LINE L1 -17 6149 5613 2308 109 0 0 chr6 119386962 119387275 -63027967 + AluSq SINE Alu 1 313 0 528 337 38 19 chr6 119387418 119387685 -63027557 + L3 LINE CR1 1194 1465 -112 2304 110 7 0 chr6 119388075 119388385 -63026857 + AluSx SINE Alu 1 312 0 2462 87 0 10 chr6 119388427 119388738 -63026504 + AluSg SINE Alu 1 308 -2 1240 207 164 0 chr6 119388802 119389058 -63026184 - AluJb SINE Alu -3 299 2 792 178 0 8 chr6 119389089 119389218 -63026024 + FLAM_A SINE Alu 1 128 -5 244 170 19 19 chr6 119389268 119389321 -63025921 + AluJo SINE Alu 84 136 -166 259 83 21 21 chr6 119389343 119389391 -63025851 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 668 153 57 8 chr6 119389402 119389526 -63025716 + FLAM_C SINE Alu 2 131 -2 32 26 0 0 chr6 119389527 119389566 -63025676 + AT_rich Low_complexity Low_complexity 1 39 0 212 328 0 0 chr6 119389700 119389721 -63025521 + GA-rich Low_complexity Low_complexity 1 21 -37 2062 120 17 7 chr6 119389721 119390022 -63025220 + AluSq SINE Alu 1 304 -9 212 328 0 0 chr6 119390022 119390058 -63025184 + GA-rich Low_complexity Low_complexity 20 58 0 1385 149 41 38 chr6 119390061 119390156 -63025086 - LTR54 LTR ERV1 -3 507 414 2398 74 0 13 chr6 119390156 119390455 -63024787 + AluSx SINE Alu 1 295 -17 1385 149 41 38 chr6 119390455 119390791 -63024451 - LTR54 LTR ERV1 -96 414 5 2466 214 17 36 chr6 119390791 119390942 -63024300 - MER65-int LTR ERV1 -384 7153 7001 2205 116 3 10 chr6 119390942 119391253 -63023989 - AluY SINE Alu -2 309 1 2466 214 17 36 chr6 119391253 119391630 -63023612 - MER65-int LTR ERV1 -536 7001 6635 256 160 0 40 chr6 119391624 119391674 -63023568 - MER65-int LTR ERV1 -653 4218 4171 * 2564 206 79 94 chr6 119391718 119392463 -63022779 - MER65-int LTR ERV1 -412 4524 3513 2319 102 3 0 chr6 119392463 119392758 -63022484 - AluSp SINE Alu -15 298 3 2564 206 79 94 chr6 119392758 119392976 -63022266 - MER65-int LTR ERV1 -1423 3513 3293 969 177 0 0 chr6 119393246 119393445 -63021797 - AluSg/x SINE Alu 0 312 137 534 191 30 54 chr6 119393449 119393626 -63021616 - L1M2 LINE L1 -656 5524 5390 5777 194 15 40 chr6 119393630 119394995 -63020247 - L1M4 LINE L1 -944 5202 3872 333 0 0 0 chr6 119394995 119395032 -63020210 + (TG)n Simple_repeat Simple_repeat 2 38 0 1498 207 36 0 chr6 119396165 119396474 -63018768 - L1M4 LINE L1 -2268 3878 3559 1182 127 27 32 chr6 119396474 119396583 -63018659 - L1MB2 LINE L1 -7 6164 6056 2205 109 7 3 chr6 119396583 119396877 -63018365 - AluSx SINE Alu -17 295 1 1182 127 27 32 chr6 119396877 119396987 -63018255 - L1MB2 LINE L1 -115 6056 5946 757 227 27 0 chr6 119396994 119397144 -63018098 - FAM SINE Alu -19 166 13 2226 151 24 5 chr6 119397148 119397525 -63017717 - L1MB2 LINE L1 -210 5961 5578 1497 226 56 29 chr6 119397554 119397784 -63017458 - L1M4 LINE L1 -2567 3579 3357 2118 109 3 3 chr6 119397784 119398094 -63017148 - AluSx SINE Alu 0 310 1 1497 226 56 29 chr6 119398094 119398348 -63016894 - L1M4 LINE L1 -2789 3357 3081 254 261 109 11 chr6 119398336 119398428 -63016814 - HAL1 LINE L1 -2377 130 30 * 2426 90 0 0 chr6 119398525 119398826 -63016416 + AluSq SINE Alu 1 301 -12 2250 110 10 0 chr6 119399755 119400063 -63015179 + AluSx SINE Alu 1 311 -1 1756 150 3 37 chr6 119400070 119400213 -63015029 + AluJb SINE Alu 1 130 -182 2436 91 0 0 chr6 119400213 119400511 -63014731 + AluSg SINE Alu 1 298 -12 1756 150 3 37 chr6 119400511 119400661 -63014581 + AluJb SINE Alu 130 284 -28 21 0 0 0 chr6 119400664 119400685 -63014557 + AT_rich Low_complexity Low_complexity 1 21 0 778 285 83 40 chr6 119400715 119401196 -63014046 - L2 LINE L2 -3 3310 2809 2003 142 9 107 chr6 119401217 119401404 -63013838 - MLT1B LTR MaLR 0 390 267 3884 95 34 92 chr6 119401404 119402077 -63013165 - MER51A LTR ERV1 0 634 1 2003 142 9 107 chr6 119402077 119402318 -63012924 - MLT1B LTR MaLR -123 267 4 896 164 0 0 chr6 119402338 119402478 -63012764 - FLAM_C SINE Alu -3 140 1 205 88 29 0 chr6 119402478 119402512 -63012730 + (TTTTTA)n Simple_repeat Simple_repeat 4 38 0 206 281 16 16 chr6 119402547 119402611 -63012631 - L2 LINE L2 -523 2791 2728 2133 118 3 22 chr6 119402655 119402970 -63012272 - AluSx SINE Alu -3 309 1 818 237 77 86 chr6 119402980 119403281 -63011961 + MLT1J LTR MaLR 47 344 -167 399 41 0 0 chr6 119403281 119403330 -63011912 + (CA)n Simple_repeat Simple_repeat 2 50 0 818 237 77 86 chr6 119403330 119403496 -63011746 + MLT1J LTR MaLR 344 510 -1 251 302 32 16 chr6 119403496 119403622 -63011620 - L2 LINE L2 -653 2661 2534 2021 129 17 0 chr6 119403752 119404039 -63011203 - AluSx SINE Alu -20 292 1 198 261 0 0 chr6 119404039 119404085 -63011157 - L2 LINE L2 -10 3262 3217 404 284 66 49 chr6 119404144 119404387 -63010855 + MER112 DNA MER1_type 1 247 -13 1929 54 25 36 chr6 119404463 119404638 -63010604 - L1MA1 LINE L1 -6 6296 6124 2203 102 0 23 chr6 119404638 119404943 -63010299 + AluSx SINE Alu 1 298 -14 1929 54 25 36 chr6 119404943 119405045 -63010197 - L1MA1 LINE L1 -178 6124 6022 193 245 0 0 chr6 119405095 119405148 -63010094 + L2 LINE L2 3185 3237 -35 341 255 20 0 chr6 119406014 119406112 -63009130 + L1MC4a LINE L1 5843 5942 -1866 610 170 0 36 chr6 119406251 119406363 -63008879 - MER2 DNA MER2_type -237 108 1 25 75 0 0 chr6 119406393 119406446 -63008796 + AT_rich Low_complexity Low_complexity 1 53 0 2357 91 7 0 chr6 119406499 119406795 -63008447 - AluSp SINE Alu -13 300 3 1234 172 0 5 chr6 119406797 119407006 -63008236 - MER4D LTR ERV1 -695 208 1 674 212 0 29 chr6 119407144 119407281 -63007961 + FLAM_A SINE Alu 1 133 0 2187 133 0 0 chr6 119407541 119407841 -63007401 - AluSx SINE Alu -12 300 1 203 303 33 16 chr6 119407992 119408114 -63007128 + L2 LINE L2 2367 2490 -824 1275 165 0 0 chr6 119408939 119409145 -63006097 + AluJo SINE Alu 101 306 -6 876 142 0 0 chr6 119409215 119409349 -63005893 + L1MA2 LINE L1 6171 6304 0 244 277 0 0 chr6 119409667 119409732 -63005510 + (CA)n Simple_repeat Simple_repeat 1 65 0 2766 77 6 0 chr6 119410000 119410353 -63004889 - THE1A LTR MaLR 0 355 1 305 175 63 16 chr6 119410762 119410825 -63004417 - MLT1B LTR MaLR 0 390 325 2058 99 45 10 chr6 119410825 119411117 -63004125 + AluSq SINE Alu 1 302 -11 918 209 0 0 chr6 119411117 119411280 -63003962 + AluJb SINE Alu 134 296 -16 231 182 0 0 chr6 119411286 119411330 -63003912 - MLT1C LTR MaLR -50 417 374 12000 69 20 2 chr6 119411340 119412185 -63003057 - L1PA7 LINE L1 0 6154 5326 219 36 0 0 chr6 119412185 119412213 -63003029 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 12000 69 20 2 chr6 119412213 119413724 -63001518 - L1PA7 LINE L1 -828 5326 3776 1642 182 63 19 chr6 119413725 119414088 -63001154 - MLT1C LTR MaLR -83 384 6 1680 180 0 29 chr6 119414209 119414520 -63000722 - AluJb SINE Alu -10 302 1 1879 103 28 81 chr6 119415863 119416183 -62999059 - AluSx SINE Alu -9 303 1 2445 93 0 0 chr6 119416192 119416494 -62998748 - AluSc SINE Alu -7 302 1 199 167 24 0 chr6 119417500 119417542 -62997700 + L2 LINE L2 2995 3037 -235 1854 176 0 3 chr6 119417764 119418076 -62997166 - AluSx SINE Alu -1 311 1 255 133 0 0 chr6 119418705 119418750 -62996492 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 268 281 16 0 chr6 119418913 119418977 -62996265 + L2 LINE L2 3208 3272 0 21 0 0 0 chr6 119419632 119419653 -62995589 + AT_rich Low_complexity Low_complexity 1 21 0 240 163 0 0 chr6 119419979 119420022 -62995220 + CT-rich Low_complexity Low_complexity 2 44 0 2086 136 10 10 chr6 119420033 119420343 -62994899 - AluSx SINE Alu -2 310 1 31 26 0 0 chr6 119420349 119420387 -62994855 + AT_rich Low_complexity Low_complexity 1 38 0 1044 177 70 0 chr6 119420393 119420579 -62994663 + MLT1D LTR MaLR 307 505 0 846 116 16 16 chr6 119420614 119420743 -62994499 + FLAM_C SINE Alu 9 137 -6 27 29 0 0 chr6 119420747 119420781 -62994461 + AT_rich Low_complexity Low_complexity 1 34 0 1044 164 6 0 chr6 119421454 119421625 -62993617 - FRAM SINE Alu -1 175 4 853 300 137 26 chr6 119421668 119422081 -62993161 - L3 LINE CR1 -108 1469 982 951 206 72 0 chr6 119422081 119422275 -62992967 + MER3 DNA MER1_type 1 208 -1 853 300 137 26 chr6 119422275 119422394 -62992848 - L3 LINE CR1 -595 982 878 326 248 18 101 chr6 119423940 119424000 -62991242 + MIR3 SINE MIR 101 150 -58 576 278 87 33 chr6 119424000 119424241 -62991001 - MER112 DNA MER1_type 0 256 3 326 248 18 101 chr6 119424241 119424289 -62990953 + MIR3 SINE MIR 150 200 -8 184 339 62 0 chr6 119424547 119424612 -62990630 + L3 LINE CR1 1483 1551 -26 1464 182 36 11 chr6 119424916 119425191 -62990051 + AluJo SINE Alu 1 282 -30 283 61 0 0 chr6 119425466 119425499 -62989743 + Alu SINE Alu 12 44 -258 1554 117 14 0 chr6 119425499 119425713 -62989529 + AluSg/x SINE Alu 90 306 -4 2048 127 7 23 chr6 119425961 119426261 -62988981 + AluSq SINE Alu 1 295 -18 1982 124 40 0 chr6 119426261 119426381 -62988861 + AluSx SINE Alu 1 115 -197 189 0 0 0 chr6 119426381 119426402 -62988840 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1982 124 40 0 chr6 119426402 119426555 -62988687 + AluSx SINE Alu 115 286 -26 2338 103 7 0 chr6 119427226 119427536 -62987706 + AluSp SINE Alu 2 313 0 1357 101 29 5 chr6 119427696 119427904 -62987338 - L1PB2 LINE L1 -11 6140 5928 262 311 85 11 chr6 119428256 119428433 -62986809 + L1ME LINE L1 5298 5487 -634 372 200 0 0 chr6 119428453 119428513 -62986729 + AluS SINE Alu 2 61 -239 819 188 50 0 chr6 119428618 119428799 -62986443 - L1MD3 LINE L1 -14 7981 7792 1069 150 23 0 chr6 119428799 119428972 -62986270 - AluSg/x SINE Alu -9 303 127 2156 108 14 0 chr6 119428976 119429271 -62985971 - AluSx SINE Alu -13 299 1 2461 93 3 0 chr6 119429274 119429586 -62985656 - AluSp SINE Alu 0 313 1 1173 175 88 4 chr6 119429586 119429837 -62985405 - L1MC4a LINE L1 -185 7623 7352 760 158 54 118 chr6 119429839 119429925 -62985317 - L1MC4a LINE L1 -854 6954 6864 2140 108 40 0 chr6 119429925 119430221 -62985021 - AluSx SINE Alu -4 308 1 760 158 54 118 chr6 119430221 119430355 -62984887 - L1MC4a LINE L1 -944 6864 6748 686 191 30 0 chr6 119430355 119430486 -62984756 + MER2 DNA MER2_type 1 135 -210 551 86 0 0 chr6 119430518 119430599 -62984643 + MER2 DNA MER2_type 126 206 -139 498 112 22 34 chr6 119430628 119430717 -62984525 - AluJ/FRAM SINE Alu -2 310 223 452 268 31 8 chr6 119430865 119430992 -62984250 + L2 LINE L2 3184 3313 0 21 71 0 0 chr6 119431031 119431073 -62984169 + AT_rich Low_complexity Low_complexity 1 42 0 2338 84 0 10 chr6 119431373 119431670 -62983572 + AluSp SINE Alu 1 294 -19 847 173 0 0 chr6 119431787 119431920 -62983322 - FLAM_A SINE Alu -4 138 6 932 105 0 23 chr6 119432143 119432276 -62982966 + FLAM_C SINE Alu 1 130 -3 1376 217 66 0 chr6 119432321 119432593 -62982649 - AluJb SINE Alu -22 290 1 448 163 109 33 chr6 119433247 119433339 -62981903 + MER58 DNA MER1_type 2 100 -115 2330 97 7 0 chr6 119433343 119433641 -62981601 + AluSp SINE Alu 1 300 -13 681 278 10 10 chr6 119433652 119433857 -62981385 + AluJo SINE Alu 2 206 -106 316 215 15 0 chr6 119434423 119434488 -62980754 - MLT1B LTR MaLR 0 390 325 988 144 36 24 chr6 119434489 119434656 -62980586 - FAM SINE Alu -16 169 1 1981 147 12 24 chr6 119434656 119434996 -62980246 - MLT1B LTR MaLR -50 340 5 21 0 0 0 chr6 119435408 119435429 -62979813 + AT_rich Low_complexity Low_complexity 1 21 0 2039 132 0 0 chr6 119435429 119435716 -62979526 - AluSx SINE Alu -23 289 3 826 140 0 70 chr6 119435782 119435925 -62979317 - FLAM_C SINE Alu 0 133 1 2474 93 0 0 chr6 119435929 119436239 -62979003 - AluSp SINE Alu -3 310 1 2149 115 7 3 chr6 119436239 119436534 -62978708 - AluSq SINE Alu -17 296 1 216 0 0 0 chr6 119486859 119486883 -62928359 + (A)n Simple_repeat Simple_repeat 1 24 0 2298 76 13 3 chr6 119486883 119487184 -62928058 + AluY SINE Alu 1 304 -7 2343 79 0 3 chr6 119487247 119487538 -62927704 + AluY SINE Alu 1 290 -21 1282 144 0 19 chr6 119487982 119488190 -62927052 - AluSc SINE Alu -13 296 93 1968 143 0 3 chr6 119488292 119488579 -62926663 - AluSx SINE Alu -26 286 1 1969 102 0 4 chr6 119489546 119489800 -62925442 - AluSg SINE Alu -57 253 1 481 201 98 71 chr6 119489800 119489868 -62925374 - MER112 DNA MER1_type -68 192 127 1805 103 31 103 chr6 119489868 119490187 -62925055 - AluSx SINE Alu -16 296 1 481 201 98 71 chr6 119490187 119490302 -62924940 - MER112 DNA MER1_type -133 127 4 728 174 30 8 chr6 119490944 119491076 -62924166 - AluJb SINE Alu -4 308 174 604 134 14 92 chr6 119491376 119491466 -62923776 - L1MB7 LINE L1 -347 5837 5760 1974 134 10 3 chr6 119491466 119491756 -62923486 - AluSx SINE Alu -19 293 2 604 134 14 92 chr6 119491756 119491807 -62923435 - L1MB7 LINE L1 -424 5760 5707 946 157 0 20 chr6 119491807 119492003 -62923239 - AluSc SINE Alu 0 326 134 875 165 82 6 chr6 119492003 119492173 -62923069 - L1MB7 LINE L1 -479 5705 5523 1054 204 167 30 chr6 119492175 119492277 -62922965 - MLT1D LTR MaLR -1 504 417 1929 126 14 0 chr6 119492277 119492596 -62922646 + AluY SINE Alu 1 323 0 1054 204 167 30 chr6 119492596 119492755 -62922487 - MLT1D LTR MaLR -88 417 205 232 261 43 22 chr6 119492858 119492950 -62922292 + L2 LINE L2 2568 2661 -653 823 235 79 88 chr6 119492950 119493116 -62922126 - MLT1J LTR MaLR -1 510 344 399 41 0 0 chr6 119493116 119493165 -62922077 + (TG)n Simple_repeat Simple_repeat 2 50 0 823 235 79 88 chr6 119493165 119493466 -62921776 - MLT1J LTR MaLR -167 344 47 2122 118 3 22 chr6 119493476 119493791 -62921451 + AluSx SINE Alu 1 309 -3 226 281 16 16 chr6 119493835 119493899 -62921343 + L2 LINE L2 2728 2791 -523 205 88 29 0 chr6 119493934 119493968 -62921274 + (TAAAAA)n Simple_repeat Simple_repeat 4 38 0 895 164 0 0 chr6 119493968 119494108 -62921134 + FLAM_C SINE Alu 1 140 -3 1434 118 0 0 chr6 119494284 119494479 -62920763 - AluSg SINE Alu -115 195 1 292 310 60 0 chr6 119494491 119494591 -62920651 - L2 LINE L2 -1 3312 3207 272 362 72 24 chr6 119494969 119495176 -62920066 + L2 LINE L2 2836 3052 -220 2309 91 7 0 chr6 119495197 119495493 -62919749 - AluSg SINE Alu -12 298 1 1164 143 0 0 chr6 119495614 119495789 -62919453 + AluSg/x SINE Alu 127 301 -11 1788 160 31 3 chr6 119495830 119496123 -62919119 - AluJo SINE Alu -11 301 1 2214 97 24 0 chr6 119496264 119496552 -62918690 - AluSq SINE Alu -18 295 1 1208 122 0 12 chr6 119496800 119496972 -62918270 - AluSg/x SINE Alu -31 279 110 1087 181 5 20 chr6 119497111 119497315 -62917927 + AluJo SINE Alu 82 282 -30 1491 89 11 0 chr6 119497322 119497513 -62917729 - AluSp SINE Alu -32 281 89 2027 142 14 3 chr6 119497676 119497972 -62917270 - AluJb SINE Alu -11 301 3 830 188 50 0 chr6 119498511 119498692 -62916550 - L1MD3 LINE L1 -14 7981 7792 1060 150 23 0 chr6 119498692 119498865 -62916377 - AluSg/x SINE Alu -9 303 127 2138 108 14 0 chr6 119498869 119499164 -62916078 - AluSx SINE Alu -13 299 1 186 133 0 0 chr6 119499167 119499197 -62916045 + (T)n Simple_repeat Simple_repeat 1 30 0 333 224 13 26 chr6 119499358 119499434 -62915808 + MER116 DNA Mariner 5 79 -1 1741 172 21 0 chr6 119499536 119499826 -62915416 - AluJb SINE Alu -16 296 1 1005 139 36 12 chr6 119499941 119500106 -62915136 - AluSp SINE Alu -12 301 133 244 214 12 60 chr6 119500173 119500257 -62914985 + MLT1L LTR MaLR 1 80 -535 355 227 13 0 chr6 119500267 119500342 -62914900 + MLT1J LTR MaLR 113 188 -323 208 139 0 0 chr6 119500346 119500382 -62914860 + (A)n Simple_repeat Simple_repeat 1 36 0 312 220 110 131 chr6 119500383 119500574 -62914668 + MLT1J LTR MaLR 177 363 -148 1717 158 40 10 chr6 119500760 119501063 -62914179 + AluJb SINE Alu 1 312 0 258 195 207 12 chr6 119501509 119501591 -62913651 + MLT1J LTR MaLR 414 511 0 1169 122 0 6 chr6 119501597 119501769 -62913473 - AluSg/x SINE Alu -5 307 137 1591 96 50 0 chr6 119501869 119502088 -62913154 + AluSg/x SINE Alu 78 307 -5 2048 137 0 13 chr6 119502098 119502411 -62912831 + AluSc SINE Alu 1 309 0 297 249 157 9 chr6 119502736 119502885 -62912357 + MIR3 SINE MIR 23 189 -19 246 157 98 20 chr6 119503989 119504040 -62911202 - MLT1D LTR MaLR -427 78 24 2994 197 57 19 chr6 119504074 119504960 -62910282 - L1M4 LINE L1 -656 5528 4601 1607 189 26 29 chr6 119504968 119505281 -62909961 - AluJo SINE Alu 0 312 1 1582 203 40 3 chr6 119505285 119505665 -62909577 - L1M4 LINE L1 -2168 3978 3585 2233 105 0 3 chr6 119505729 119506024 -62909218 - AluSg SINE Alu -14 296 3 990 140 0 24 chr6 119506574 119506738 -62908504 + AluSq SINE Alu 33 192 -121 1667 150 114 78 chr6 119506740 119507021 -62908221 + MLT1D LTR MaLR 106 406 -99 1743 129 54 27 chr6 119507021 119507315 -62907927 - AluSg SINE Alu -8 302 1 1667 150 114 78 chr6 119507315 119507419 -62907823 + MLT1D LTR MaLR 406 505 0 322 210 25 12 chr6 119507528 119507609 -62907633 + AluSg/x SINE Alu 110 191 -111 1346 129 100 66 chr6 119507709 119507765 -62907477 - MER50 LTR ERV1 -256 478 425 2291 114 0 16 chr6 119507765 119508082 -62907160 - AluSx SINE Alu 0 312 1 1346 129 100 66 chr6 119508082 119508296 -62906946 - MER50 LTR ERV1 -309 425 199 492 195 11 0 chr6 119508297 119508384 -62906858 - AluS SINE Alu -223 89 2 893 160 23 34 chr6 119508512 119508687 -62906555 + MER50 LTR ERV1 1 173 -561 1039 148 0 0 chr6 119508690 119508839 -62906403 + AluSg/x SINE Alu 151 299 -11 1246 236 0 0 chr6 119508887 119509124 -62906118 - MER45B DNA AcHobo -544 496 260 374 233 22 22 chr6 119509314 119509404 -62905838 + MIR3 SINE MIR 91 180 -28 1312 150 52 0 chr6 119509972 119510185 -62905057 - AluJb SINE Alu -3 309 86 811 132 47 16 chr6 119510197 119510326 -62904916 - FLAM_C SINE Alu -10 133 1 820 109 0 0 chr6 119510843 119510953 -62904289 + AluSq/x SINE Alu 1 110 -202 871 125 42 28 chr6 119511053 119511197 -62904045 + FAM SINE Alu 24 169 -16 343 227 0 0 chr6 119511198 119511264 -62903978 + MLT1B LTR MaLR 325 390 0 1153 138 0 12 chr6 119511271 119511438 -62903804 + AluJb SINE Alu 129 293 -19 1481 254 76 38 chr6 119511462 119511846 -62903396 - L1ME4a LINE L1 -220 5901 5486 1768 164 0 45 chr6 119511846 119512158 -62903084 - AluJb SINE Alu -13 299 2 1481 254 76 38 chr6 119512158 119512355 -62902887 - L1ME4a LINE L1 -635 5486 5298 1431 101 29 5 chr6 119512707 119512915 -62902327 + L1PB2 LINE L1 5928 6140 -11 2324 103 7 0 chr6 119513075 119513385 -62901857 - AluSp SINE Alu 0 313 2 2250 110 10 0 chr6 119514930 119515238 -62900004 + AluSx SINE Alu 1 311 -1 1756 150 3 37 chr6 119515245 119515388 -62899854 + AluJb SINE Alu 1 130 -182 2436 91 0 0 chr6 119515388 119515686 -62899556 + AluSg SINE Alu 1 298 -12 1756 150 3 37 chr6 119515686 119515836 -62899406 + AluJb SINE Alu 130 284 -28 21 0 0 0 chr6 119515839 119515860 -62899382 + AT_rich Low_complexity Low_complexity 1 21 0 778 285 83 40 chr6 119515890 119516371 -62898871 - L2 LINE L2 -3 3310 2809 1130 129 15 70 chr6 119516392 119516579 -62898663 - MLT1B LTR MaLR 0 390 213 3706 107 34 92 chr6 119516579 119517252 -62897990 - MER51A LTR ERV1 0 634 1 1130 129 15 70 chr6 119517252 119517265 -62897977 - MLT1B LTR MaLR -177 213 201 1337 127 97 82 chr6 119517962 119518111 -62897131 - AluJo SINE Alu -20 292 136 2222 78 17 3 chr6 119518111 119518405 -62896837 - AluSq SINE Alu -15 298 1 1337 127 97 82 chr6 119518405 119518522 -62896720 - AluJo SINE Alu -176 136 22 2353 95 0 0 chr6 119520116 119520421 -62894821 - AluSp SINE Alu -8 305 1 329 234 0 26 chr6 119520487 119520564 -62894678 + MIR SINE MIR 170 244 -18 971 169 0 6 chr6 119520651 119520829 -62894413 - FRAM SINE Alu 0 176 1 565 167 70 0 chr6 119520967 119521081 -62894161 - L1MC4a LINE L1 -335 7473 7352 760 158 54 118 chr6 119521083 119521169 -62894073 - L1MC4a LINE L1 -854 6954 6864 2140 108 40 0 chr6 119521169 119521465 -62893777 - AluSx SINE Alu -4 308 1 760 158 54 118 chr6 119521465 119521599 -62893643 - L1MC4a LINE L1 -944 6864 6748 677 182 30 8 chr6 119521599 119521731 -62893511 + MER2 DNA MER2_type 1 135 -210 551 86 0 0 chr6 119521763 119521844 -62893398 + MER2 DNA MER2_type 126 206 -139 498 112 22 34 chr6 119521873 119521962 -62893280 - AluJ/FRAM SINE Alu -2 310 223 452 268 31 8 chr6 119522110 119522237 -62893005 + L2 LINE L2 3184 3313 0 21 71 0 0 chr6 119522276 119522318 -62892924 + AT_rich Low_complexity Low_complexity 1 42 0 2338 84 0 10 chr6 119522618 119522915 -62892327 + AluSp SINE Alu 1 294 -19 847 173 0 0 chr6 119523032 119523165 -62892077 - FLAM_A SINE Alu -4 138 6 932 105 0 23 chr6 119523388 119523521 -62891721 + FLAM_C SINE Alu 1 130 -3 1376 217 66 0 chr6 119523566 119523838 -62891404 - AluJb SINE Alu -22 290 1 448 163 109 33 chr6 119524492 119524584 -62890658 + MER58 DNA MER1_type 2 100 -115 2330 97 7 0 chr6 119524588 119524886 -62890356 + AluSp SINE Alu 1 300 -13 1304 231 3 28 chr6 119524896 119525216 -62890026 + AluJo SINE Alu 1 312 0 306 0 0 0 chr6 119525329 119525363 -62889879 + (CA)n Simple_repeat Simple_repeat 2 35 0 1541 204 0 0 chr6 119525515 119525799 -62889443 - AluJb SINE Alu -28 284 1 1627 136 52 32 chr6 119526302 119526611 -62888631 + L1MB7 LINE L1 5845 6159 -25 2316 60 0 3 chr6 119526889 119527205 -62888037 - AluSx SINE Alu 0 315 1 419 264 114 31 chr6 119527751 119527978 -62887264 + MIR SINE MIR 1 246 -16 1858 128 24 7 chr6 119528693 119528983 -62886259 - AluJb SINE Alu -17 295 1 406 156 57 113 chr6 119529009 119529088 -62886154 + MIR SINE MIR 74 144 -118 2365 46 0 14 chr6 119529088 119529396 -62885846 + AluY SINE Alu 4 307 0 406 156 57 113 chr6 119529396 119529456 -62885786 + MIR SINE MIR 144 206 -56 2199 132 3 0 chr6 119529900 119530211 -62885031 + AluSx SINE Alu 1 312 0 275 298 12 0 chr6 119531078 119531162 -62884080 + MIR SINE MIR 69 153 -109 1703 173 27 13 chr6 119531236 119531537 -62883705 + AluJo SINE Alu 1 305 -7 1700 145 56 7 chr6 119532111 119532423 -62882819 + AluSx SINE Alu 1 325 0 243 255 209 39 chr6 119532589 119532742 -62882500 + MIR SINE MIR 20 198 -64 1823 168 23 16 chr6 119533274 119533584 -62881658 + AluJo SINE Alu 1 312 0 1719 191 10 3 chr6 119533727 119534030 -62881212 + AluJb SINE Alu 1 305 -7 207 269 90 0 chr6 119534107 119534174 -62881068 + MIR SINE MIR 161 233 -29 2153 117 3 23 chr6 119534207 119534346 -62880896 + AluSx SINE Alu 1 141 -171 2345 76 3 0 chr6 119534346 119534634 -62880608 + AluY SINE Alu 1 289 -22 2153 117 3 23 chr6 119534634 119534801 -62880441 + AluSx SINE Alu 141 301 -11 816 84 0 9 chr6 119535323 119535430 -62879812 + U6 snRNA snRNA 1 106 -1 25 0 0 0 chr6 119535433 119535458 -62879784 + AT_rich Low_complexity Low_complexity 1 25 0 2218 131 0 6 chr6 119535723 119536037 -62879205 - AluSx SINE Alu 0 312 1 577 122 131 19 chr6 119536149 119536256 -62878986 - FLAM_A SINE Alu -11 131 13 2190 94 0 0 chr6 119536538 119536813 -62878429 - AluSg SINE Alu -35 275 1 351 267 56 43 chr6 119536835 119537034 -62878208 - MIR SINE MIR -50 212 17 * 447 303 49 45 chr6 119537022 119537266 -62877976 + L3 LINE CR1 433 677 -900 288 254 231 23 chr6 119537528 119537701 -62877541 + L3 LINE CR1 1022 1230 -347 27 49 0 0 chr6 119537736 119537777 -62877465 + AT_rich Low_complexity Low_complexity 1 41 0 814 161 0 0 chr6 119537777 119537895 -62877347 - FLAM_C SINE Alu -25 118 1 1787 240 56 17 chr6 119537895 119538412 -62876830 - L1ME1 LINE L1 -17 6149 5613 2308 109 0 0 chr6 119538548 119538861 -62876381 + AluSq SINE Alu 1 313 0 528 337 38 19 chr6 119539004 119539271 -62875971 + L3 LINE CR1 1194 1465 -112 2304 110 7 0 chr6 119539661 119539971 -62875271 + AluSx SINE Alu 1 312 0 2462 87 0 10 chr6 119540013 119540324 -62874918 + AluSg SINE Alu 1 308 -2 1240 207 164 0 chr6 119540388 119540644 -62874598 - AluJb SINE Alu -3 299 2 792 178 0 8 chr6 119540675 119540804 -62874438 + FLAM_A SINE Alu 1 128 -5 244 170 19 19 chr6 119540854 119540907 -62874335 + AluJo SINE Alu 84 136 -166 259 83 21 21 chr6 119540929 119540977 -62874265 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 668 153 57 8 chr6 119540988 119541112 -62874130 + FLAM_C SINE Alu 2 131 -2 32 26 0 0 chr6 119541113 119541152 -62874090 + AT_rich Low_complexity Low_complexity 1 39 0 212 328 0 0 chr6 119541286 119541307 -62873935 + GA-rich Low_complexity Low_complexity 1 21 -37 2004 122 16 10 chr6 119541307 119541610 -62873632 + AluSq SINE Alu 1 305 -8 212 328 0 0 chr6 119541610 119541646 -62873596 + GA-rich Low_complexity Low_complexity 20 58 0 1385 149 41 38 chr6 119541649 119541744 -62873498 - LTR54 LTR ERV1 -3 507 414 2398 74 0 13 chr6 119541744 119542043 -62873199 + AluSx SINE Alu 1 295 -17 1385 149 41 38 chr6 119542043 119542379 -62872863 - LTR54 LTR ERV1 -96 414 5 779 206 0 0 chr6 119542379 119542520 -62872722 - MER57-int LTR ERV1 -384 7153 7013 2154 114 13 10 chr6 119542745 119543051 -62872191 - AluY SINE Alu -4 307 1 180 298 0 0 chr6 119543307 119543354 -62871888 + MIR SINE MIR 102 148 -114 1138 175 194 16 chr6 119543444 119543696 -62871546 - AluJb SINE Alu -4 298 2 1943 145 10 13 chr6 119544930 119545233 -62870009 + AluSx SINE Alu 1 302 -10 10492 39 8 127 chr6 119545303 119546863 -62868379 - SVA Other Other -1 1385 11 307 249 132 56 chr6 119546923 119547136 -62868106 + Tigger8 DNA MER2_type 35 263 -403 * 660 209 79 51 chr6 119547105 119547358 -62867884 - Tigger8 DNA MER2_type -180 486 227 1294 172 47 47 chr6 119547552 119547848 -62867394 + AluSx SINE Alu 1 296 -16 526 130 0 0 chr6 119547848 119547925 -62867317 + AluSp SINE Alu 134 210 -103 860 184 14 0 chr6 119547926 119548073 -62867169 + AluSg/x SINE Alu 151 299 -13 1896 117 46 0 chr6 119548092 119548373 -62866869 + AluSq SINE Alu 19 312 -1 1007 116 0 7 chr6 119548373 119548520 -62866722 + Tigger4(Zombi) DNA MER2_type 2544 2689 -42 1436 254 86 48 chr6 119548635 119548668 -62866574 + MLT1E2 LTR MaLR 102 132 -494 2325 72 7 7 chr6 119548668 119548960 -62866282 + AluY SINE Alu 1 292 -19 1436 254 86 48 chr6 119548960 119549426 -62865816 + MLT1E2 LTR MaLR 132 620 -6 2333 72 24 0 chr6 119549501 119549794 -62865448 - AluY SINE Alu -11 300 1 1478 201 10 17 chr6 119549797 119550096 -62865146 - AluJo SINE Alu -15 297 1 2116 114 7 3 chr6 119550929 119551219 -62864023 - AluSx SINE Alu -19 293 3 2630 185 63 32 chr6 119551490 119551604 -62863638 + MLT1F LTR MaLR 3 112 -430 2262 111 0 10 chr6 119551604 119551902 -62863340 - AluSx SINE Alu -17 295 1 2630 185 63 32 chr6 119551902 119552311 -62862931 + MLT1F LTR MaLR 112 542 0 1693 123 3 94 chr6 119552840 119552960 -62862282 + AluSx SINE Alu 23 152 -160 2331 94 7 7 chr6 119552960 119553267 -62861975 + AluSp SINE Alu 1 307 -6 1693 123 3 94 chr6 119553267 119553455 -62861787 + AluSx SINE Alu 152 303 -9 503 512 8 21 chr6 119553494 119553554 -62861688 + AluJb SINE Alu 72 131 -181 2283 114 10 0 chr6 119553554 119553860 -62861382 + AluSg SINE Alu 1 309 -1 503 512 8 21 chr6 119553860 119554041 -62861201 + AluJb SINE Alu 131 310 -2 2237 107 7 0 chr6 119554101 119554399 -62860843 + AluSx SINE Alu 1 300 -12 562 186 0 0 chr6 119554535 119554637 -62860605 - U13 snRNA snRNA -2 102 1 1743 137 27 43 chr6 119554886 119555025 -62860217 + AluSx SINE Alu 1 141 -171 2233 97 0 7 chr6 119555025 119555333 -62859909 + AluSc SINE Alu 1 306 -3 1743 137 27 43 chr6 119555333 119555492 -62859750 + AluSx SINE Alu 141 294 -18 2283 94 7 3 chr6 119555899 119556197 -62859045 + AluSq SINE Alu 1 299 -14 325 222 28 0 chr6 119556540 119556612 -62858630 + L1ME LINE L1 5503 5576 -594 285 77 0 0 chr6 119556613 119556652 -62858590 + MER41B LTR ERV1 481 519 -116 2343 101 0 0 chr6 119556652 119556948 -62858294 + AluSx SINE Alu 1 296 -16 1118 238 31 28 chr6 119557139 119557425 -62857817 - MER65-int LTR ERV1 -616 6921 6635 251 219 0 31 chr6 119557419 119557483 -62857759 - MER65-int LTR ERV1 -653 4218 4157 * 2527 207 79 94 chr6 119557513 119558258 -62856984 - MER65-int LTR ERV1 -412 4524 3513 2319 102 3 0 chr6 119558258 119558553 -62856689 - AluSp SINE Alu -15 298 3 2527 207 79 94 chr6 119558553 119558771 -62856471 - MER65-int LTR ERV1 -1423 3513 3293 969 177 0 0 chr6 119559041 119559240 -62856002 - AluSg/x SINE Alu 0 310 135 534 191 30 54 chr6 119559244 119559421 -62855821 - L1M2 LINE L1 -656 5524 5390 5777 194 15 40 chr6 119559425 119560790 -62854452 - L1M4 LINE L1 -944 5202 3872 333 0 0 0 chr6 119560790 119560827 -62854415 + (TG)n Simple_repeat Simple_repeat 2 38 0 1498 207 36 0 chr6 119561960 119562269 -62852973 - L1M4 LINE L1 -2268 3878 3559 1182 127 27 32 chr6 119562269 119562378 -62852864 - L1MB2 LINE L1 -7 6164 6056 2205 109 7 3 chr6 119562378 119562672 -62852570 - AluSx SINE Alu -17 295 1 1182 127 27 32 chr6 119562672 119562782 -62852460 - L1MB2 LINE L1 -115 6056 5946 757 227 27 0 chr6 119562789 119562939 -62852303 - FAM SINE Alu -19 166 13 2226 151 24 5 chr6 119562943 119563320 -62851922 - L1MB2 LINE L1 -210 5961 5578 803 217 78 22 chr6 119563349 119563579 -62851663 - L1M4 LINE L1 -2567 3579 3337 1992 107 4 7 chr6 119563579 119563877 -62851365 - AluSx SINE Alu 0 310 14 1642 182 63 19 chr6 119564118 119564481 -62850761 + MLT1C LTR MaLR 6 384 -83 10847 69 3 8 chr6 119564482 119566866 -62848376 + L1PA7 LINE L1 3776 6154 0 231 182 0 0 chr6 119566876 119566920 -62848322 + MLT1C LTR MaLR 374 417 -50 883 207 0 6 chr6 119566926 119567090 -62848152 - AluJb SINE Alu -16 296 134 2058 99 45 10 chr6 119567090 119567382 -62847860 - AluSq SINE Alu -11 302 1 305 175 63 16 chr6 119567382 119567445 -62847797 + MLT1B LTR MaLR 325 390 0 2766 77 6 0 chr6 119567855 119568208 -62847034 + THE1A LTR MaLR 1 355 0 244 277 0 0 chr6 119568476 119568541 -62846701 + (TG)n Simple_repeat Simple_repeat 1 65 0 876 142 0 0 chr6 119568859 119568993 -62846249 - L1MA2 LINE L1 0 6304 6171 1206 180 0 0 chr6 119569064 119569270 -62845972 - AluJo SINE Alu -6 306 101 203 303 33 16 chr6 119570095 119570217 -62845025 - L2 LINE L2 -824 2490 2367 2187 133 0 0 chr6 119570368 119570668 -62844574 + AluSx SINE Alu 1 300 -12 674 212 0 29 chr6 119570928 119571065 -62844177 - FLAM_A SINE Alu 0 133 1 1234 172 0 5 chr6 119571203 119571412 -62843830 + MER4D LTR ERV1 1 208 -695 2322 91 7 3 chr6 119571414 119571711 -62843531 + AluSp SINE Alu 3 300 -13 25 75 0 0 chr6 119571764 119571817 -62843425 + AT_rich Low_complexity Low_complexity 1 53 0 610 170 0 36 chr6 119571847 119571959 -62843283 + MER2 DNA MER2_type 1 108 -237 341 255 20 0 chr6 119572098 119572196 -62843046 - L1MC4a LINE L1 -1866 5942 5843 193 245 0 0 chr6 119573062 119573115 -62842127 - L2 LINE L2 -35 3237 3185 1929 54 25 36 chr6 119573165 119573267 -62841975 + L1MA1 LINE L1 6022 6124 -178 2203 102 0 23 chr6 119573267 119573572 -62841670 - AluSx SINE Alu -14 298 1 1929 54 25 36 chr6 119573572 119573747 -62841495 + L1MA1 LINE L1 6124 6296 -6 404 284 66 49 chr6 119573823 119574066 -62841176 - MER112 DNA MER1_type -13 247 1 198 261 0 0 chr6 119574125 119574171 -62841071 + L2 LINE L2 3217 3262 -10 1502 119 10 0 chr6 119574171 119574373 -62840869 + AluSx SINE Alu 1 204 -108 2489 54 3 3 chr6 119574491 119574785 -62840457 + AluY SINE Alu 1 294 -17 2312 69 28 3 chr6 119575216 119575506 -62839736 + AluY SINE Alu 1 297 -14 407 179 343 0 chr6 119575910 119576044 -62839198 + MER5A DNA MER1_type 4 183 -6 1434 209 21 11 chr6 119577000 119577287 -62837955 - AluJo SINE Alu -21 291 2 1415 94 47 0 chr6 119577662 119577854 -62837388 - AluSg/x SINE Alu -10 300 100 2044 123 31 0 chr6 119579664 119579957 -62835285 - AluSx SINE Alu -10 302 1 1514 186 7 4 chr6 119580006 119580280 -62834962 - AluJo SINE Alu -37 275 1 2371 44 55 3 chr6 119580335 119580628 -62834614 + AluY SINE Alu 1 308 -3 273 315 94 34 chr6 119582119 119582268 -62832974 + L3 LINE CR1 235 392 -1185 2283 168 40 24 chr6 119582281 119582339 -62832903 - MER65C LTR ERV1 -1 460 404 2949 160 62 49 chr6 119582339 119582444 -62832798 - LTR26E LTR ERV1 0 622 520 1960 172 0 0 chr6 119582444 119582752 -62832490 + AluSx SINE Alu 1 308 -4 2949 160 62 49 chr6 119582752 119582977 -62832265 - LTR26E LTR ERV1 -102 520 299 1425 168 66 21 chr6 119582977 119583263 -62831979 - AluJo SINE Alu -13 299 1 2949 160 62 49 chr6 119583263 119583545 -62831697 - LTR26E LTR ERV1 -323 299 1 2283 168 40 24 chr6 119583545 119583939 -62831303 - MER65C LTR ERV1 -57 404 1 2281 102 3 6 chr6 119584059 119584372 -62830870 - AluSx SINE Alu 0 312 1 227 178 123 55 chr6 119584459 119584532 -62830710 - L1ME4a LINE L1 -69 6052 5975 3415 158 18 67 chr6 119584593 119585310 -62829932 - LTR8 LTR ERV1 -8 683 2 812 176 44 0 chr6 119585311 119585447 -62829795 + FAM SINE Alu 30 171 -14 1405 191 77 18 chr6 119585450 119585723 -62829519 + AluJo SINE Alu 1 289 -23 2234 122 0 6 chr6 119585776 119586087 -62829155 + AluSx SINE Alu 1 309 -3 812 147 0 70 chr6 119586091 119586234 -62829008 + FLAM_C SINE Alu 1 133 0 2039 132 0 0 chr6 119586300 119586587 -62828655 + AluSx SINE Alu 3 289 -23 21 0 0 0 chr6 119586587 119586608 -62828634 + AT_rich Low_complexity Low_complexity 1 21 0 401 153 0 42 chr6 119587052 119587124 -62828118 - AluJ/FLAM SINE Alu -233 69 1 1879 103 28 81 chr6 119588466 119588786 -62826456 - AluSx SINE Alu -9 303 1 2445 93 0 0 chr6 119588795 119589097 -62826145 - AluSc SINE Alu -7 302 1 199 167 24 0 chr6 119590103 119590145 -62825097 + L2 LINE L2 2995 3037 -235 1854 176 0 3 chr6 119590367 119590679 -62824563 - AluSx SINE Alu -1 311 1 255 133 0 0 chr6 119591308 119591353 -62823889 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 268 281 16 0 chr6 119591516 119591580 -62823662 + L2 LINE L2 3208 3272 0 21 0 0 0 chr6 119592235 119592256 -62822986 + AT_rich Low_complexity Low_complexity 1 21 0 240 163 0 0 chr6 119592582 119592625 -62822617 + CT-rich Low_complexity Low_complexity 2 44 0 2086 136 10 10 chr6 119592636 119592946 -62822296 - AluSx SINE Alu -2 310 1 31 26 0 0 chr6 119592952 119592990 -62822252 + AT_rich Low_complexity Low_complexity 1 38 0 1044 177 70 0 chr6 119592996 119593182 -62822060 + MLT1D LTR MaLR 307 505 0 846 116 16 16 chr6 119593217 119593346 -62821896 + FLAM_C SINE Alu 9 137 -6 27 29 0 0 chr6 119593350 119593384 -62821858 + AT_rich Low_complexity Low_complexity 1 34 0 1044 164 6 0 chr6 119594057 119594228 -62821014 - FRAM SINE Alu -1 175 4 853 300 137 26 chr6 119594271 119594684 -62820558 - L3 LINE CR1 -108 1469 982 951 206 72 0 chr6 119594684 119594878 -62820364 + MER3 DNA MER1_type 1 208 -1 853 300 137 26 chr6 119594878 119594997 -62820245 - L3 LINE CR1 -595 982 878 326 248 18 101 chr6 119596543 119596603 -62818639 + MIR3 SINE MIR 101 150 -58 576 278 87 33 chr6 119596603 119596844 -62818398 - MER112 DNA MER1_type 0 256 3 326 248 18 101 chr6 119596844 119596892 -62818350 + MIR3 SINE MIR 150 200 -8 184 339 62 0 chr6 119597150 119597215 -62818027 + L3 LINE CR1 1483 1551 -26 1464 182 36 11 chr6 119597519 119597794 -62817448 + AluJo SINE Alu 1 282 -30 283 61 0 0 chr6 119598069 119598102 -62817140 + Alu SINE Alu 12 44 -256 1554 117 14 0 chr6 119598102 119598316 -62816926 + AluSg/x SINE Alu 92 308 -4 2048 127 7 23 chr6 119598565 119598865 -62816377 + AluSq SINE Alu 1 295 -18 1619 132 47 4 chr6 119598865 119598985 -62816257 + AluSx SINE Alu 1 114 -198 189 0 0 0 chr6 119598985 119599006 -62816236 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1619 132 47 4 chr6 119599006 119599119 -62816123 + AluSx SINE Alu 114 245 -67 1249 65 0 7 chr6 119599219 119599373 -62815869 - AluSx SINE Alu -159 153 1 2166 112 7 3 chr6 119599373 119599668 -62815574 - AluSq SINE Alu -17 296 1 2244 116 0 3 chr6 119600509 119600812 -62814430 + AluSx SINE Alu 1 302 -10 670 102 0 0 chr6 119600814 119600902 -62814340 + AluY SINE Alu 2 89 -222 824 103 9 0 chr6 119600902 119601042 -62814200 + AluSg/x SINE Alu 174 314 0 2362 99 0 0 chr6 119601275 119601568 -62813674 + AluSc SINE Alu 2 294 -15 272 30 0 0 chr6 119601790 119601823 -62813419 + AluJ/FLAM SINE Alu 61 93 -209 689 114 0 9 chr6 119601828 119601933 -62813309 - FLAM_C SINE Alu -34 109 6 3080 163 78 25 chr6 119601939 119602093 -62813149 - L1MC3 LINE L1 -130 7655 7511 2264 105 7 0 chr6 119602093 119602389 -62812853 - AluSx SINE Alu -14 298 1 3080 163 78 25 chr6 119602389 119602872 -62812370 - L1MC3 LINE L1 -274 7511 6984 256 293 43 0 chr6 119602999 119603115 -62812127 - L1ME LINE L1 -348 5773 5653 28 0 0 0 chr6 119604176 119604204 -62811038 + GC_rich Low_complexity Low_complexity 1 28 0 207 217 43 0 chr6 119604377 119604446 -62810796 + (CCCG)n Simple_repeat Simple_repeat 3 74 0 28 48 0 0 chr6 119604629 119604671 -62810571 + GC_rich Low_complexity Low_complexity 1 42 0 396 266 59 40 chr6 119606049 119606314 -62808928 - L1ME3A LINE L1 -231 5939 5674 342 0 0 0 chr6 119606726 119606764 -62808478 + (T)n Simple_repeat Simple_repeat 1 38 0 307 236 8 20 chr6 119607124 119607246 -62807996 + MER91A DNA MER1_type 26 190 0 192 246 123 0 chr6 119607750 119607807 -62807435 - MIR SINE MIR -102 106 43 315 282 45 0 chr6 119607844 119607954 -62807288 - MIR SINE MIR -48 214 100 27 0 0 0 chr6 119608004 119608031 -62807211 + AT_rich Low_complexity Low_complexity 1 27 0 703 103 0 94 chr6 119608031 119608148 -62807094 - U6 snRNA snRNA -1 106 1 2318 95 13 0 chr6 119609125 119609431 -62805811 - AluSg SINE Alu 0 310 1 2443 92 0 3 chr6 119609575 119609889 -62805353 + AluSq SINE Alu 1 313 0 417 138 0 0 chr6 119609976 119610041 -62805201 + AluSp/q SINE Alu 232 296 -17 24 32 0 0 chr6 119610847 119610878 -62804364 + AT_rich Low_complexity Low_complexity 1 31 0 1622 185 17 26 chr6 119611456 119611758 -62803484 - AluJo SINE Alu -13 299 1 2531 103 8 24 chr6 119612376 119612746 -62802496 + THE1B LTR MaLR 1 364 0 1635 188 12 38 chr6 119613619 119613939 -62801303 - AluJb SINE Alu 0 312 1 2233 114 0 16 chr6 119614116 119614431 -62800811 - AluSx SINE Alu -2 310 1 777 99 20 106 chr6 119614787 119614841 -62800401 + AluJo SINE Alu 1 58 -254 2255 101 3 3 chr6 119614841 119615138 -62800104 + AluSp SINE Alu 1 297 -16 777 99 20 106 chr6 119615138 119615234 -62800008 + AluJo SINE Alu 58 138 -174 1881 163 10 7 chr6 119616138 119616432 -62798810 - AluJo SINE Alu -17 295 1 1936 157 3 0 chr6 119616558 119616857 -62798385 + AluJb SINE Alu 1 300 -12 2140 106 14 0 chr6 119617216 119617500 -62797742 - AluSc SINE Alu -21 288 1 204 179 0 0 chr6 119617645 119617684 -62797558 + (CATA)n Simple_repeat Simple_repeat 2 40 0 411 56 0 0 chr6 119617756 119617810 -62797432 + (TC)n Simple_repeat Simple_repeat 1 54 0 333 47 0 0 chr6 119617810 119617853 -62797389 + (TA)n Simple_repeat Simple_repeat 1 43 0 1922 162 0 3 chr6 119617853 119618149 -62797093 - AluJb SINE Alu -17 295 1 764 271 111 8 chr6 119618200 119618444 -62796798 - MER46C DNA MER2_type -65 273 5 1859 157 7 0 chr6 119618450 119618737 -62796505 - AluJb SINE Alu -22 290 2 495 322 58 31 chr6 119618973 119619245 -62795997 - L1ME LINE L1 -442 5679 5400 23 0 0 0 chr6 119619665 119619688 -62795554 + AT_rich Low_complexity Low_complexity 1 23 0 1971 143 0 14 chr6 119619730 119620023 -62795219 - AluJb SINE Alu -23 289 1 2118 146 0 0 chr6 119620033 119620335 -62794907 - AluSq SINE Alu -11 302 1 188 380 13 25 chr6 119620779 119620858 -62794384 - MIR3 SINE MIR -126 82 5 298 230 14 14 chr6 119621280 119621354 -62793888 + MER45A DNA AcHobo 104 177 -1 2717 128 0 40 chr6 119623948 119624400 -62790842 + HSMAR2 DNA Mariner 2 435 -867 * 4821 113 16 23 chr6 119624394 119624842 -62790400 + HSMAR2 DNA Mariner 581 1024 -278 2218 119 0 0 chr6 119624842 119625137 -62790105 - AluSx SINE Alu -17 295 1 4821 113 16 23 chr6 119625137 119625415 -62789827 + HSMAR2 DNA Mariner 1024 1302 0 24 32 0 0 chr6 119625849 119625880 -62789362 + AT_rich Low_complexity Low_complexity 1 31 0 2449 186 19 30 chr6 119625884 119626272 -62788970 - L1ME1 LINE L1 -5 6161 5779 1753 182 14 3 chr6 119626272 119626569 -62788673 - AluJo SINE Alu -12 300 1 2449 186 19 30 chr6 119626569 119626707 -62788535 - L1ME1 LINE L1 -387 5779 5641 284 324 121 52 chr6 119626907 119627385 -62787857 - L2 LINE L2 -1342 1972 1462 239 136 23 0 chr6 119627759 119627803 -62787439 - L1MB4 LINE L1 0 6180 6136 638 146 24 160 chr6 119628044 119628250 -62786992 - L1MA8 LINE L1 -10 6281 6104 821 159 0 8 chr6 119628258 119628390 -62786852 + FLAM_C SINE Alu 3 133 -10 853 221 21 11 chr6 119628416 119628606 -62786636 - L1MA6 LINE L1 -233 6067 5876 454 157 0 12 chr6 119628601 119628684 -62786558 - L1MB4 LINE L1 -34 6146 6065 * 283 267 0 0 chr6 119628779 119628854 -62786388 + (TA)n Simple_repeat Simple_repeat 1 75 0 1653 163 20 34 chr6 119628857 119629152 -62786090 - AluJo SINE Alu -21 291 1 598 289 40 0 chr6 119629235 119629387 -62785855 + L2 LINE L2 3114 3271 -1 28 61 0 0 chr6 119629867 119629916 -62785326 + AT_rich Low_complexity Low_complexity 1 49 0 231 245 0 0 chr6 119631076 119631125 -62784117 + L1ME LINE L1 5833 5881 -283 616 209 17 57 chr6 119631189 119631366 -62783876 - MER104 DNA Tc2 0 180 11 21 0 0 0 chr6 119631553 119631574 -62783668 + AT_rich Low_complexity Low_complexity 1 21 0 624 133 0 0 chr6 119631688 119631778 -62783464 - AluSg/x SINE Alu -8 304 215 1997 122 30 0 chr6 119632030 119632326 -62782916 - AluSx SINE Alu -7 305 1 2412 93 0 0 chr6 119633023 119633333 -62781909 - AluSx SINE Alu 0 312 3 2430 75 0 7 chr6 119633886 119634194 -62781048 + AluY SINE Alu 1 306 -5 248 288 38 0 chr6 119634594 119634674 -62780568 - MIR3 SINE MIR -15 193 111 291 209 148 0 chr6 119634847 119634962 -62780280 + L1M LINE L1 5295 5426 -2569 2385 83 0 3 chr6 119635217 119635518 -62779724 + AluSc SINE Alu 1 300 -9 1063 261 134 7 chr6 119636087 119636386 -62778856 - MER58B DNA MER1_type 0 341 5 767 224 135 21 chr6 119636432 119636624 -62778618 + MLT1A2 LTR MaLR 1 169 -205 468 207 152 0 chr6 119637335 119637480 -62777762 - MER5C DNA MER1_type -157 167 1 1829 164 3 0 chr6 119638097 119638390 -62776852 + AluJo SINE Alu 1 294 -18 909 257 59 107 chr6 119638544 119639039 -62776203 + MER45C DNA AcHobo 1 471 -482 1959 137 0 29 chr6 119641174 119641480 -62773762 - AluJb SINE Alu -15 297 1 21 71 0 0 chr6 119641883 119641925 -62773317 + AT_rich Low_complexity Low_complexity 1 42 0 338 210 99 48 chr6 119642579 119642737 -62772505 - MIR SINE MIR -56 206 37 21 36 0 0 chr6 119643592 119643620 -62771622 + AT_rich Low_complexity Low_complexity 1 28 0 447 198 151 16 chr6 119643631 119643757 -62771485 + MIR SINE MIR 56 198 -64 369 43 0 0 chr6 119643763 119643809 -62771433 - MADE1 DNA Mariner -34 46 1 253 132 19 38 chr6 119643812 119643865 -62771377 + MIR SINE MIR 211 262 0 729 282 180 14 chr6 119643878 119644344 -62770898 - L2 LINE L2 0 3313 2709 543 261 199 14 chr6 119645021 119645232 -62770010 - MIR SINE MIR 0 262 13 23 0 0 0 chr6 119645590 119645613 -62769629 + AT_rich Low_complexity Low_complexity 1 23 0 33 118 0 0 chr6 119645647 119645834 -62769408 + AT_rich Low_complexity Low_complexity 1 187 0 849 231 80 9 chr6 119647620 119647832 -62767410 + MIR SINE MIR 1 227 -35 2978 87 154 15 chr6 119647835 119648296 -62766946 + LTR17 LTR ERV1 256 780 0 48703 55 18 7 chr6 119648296 119654251 -62760991 + HERV17 LTR ERV1 1 6019 -2607 284 77 0 0 chr6 119654244 119654283 -62760959 + HERV17 LTR ERV1 7510 7548 -1078 * 2211 91 3 0 chr6 119654273 119654560 -62760682 + HERV17 LTR ERV1 8335 8622 -4 2837 34 0 0 chr6 119654564 119654891 -62760351 + LTR17 LTR ERV1 1 327 -453 216 0 0 0 chr6 119654893 119654917 -62760325 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 270 213 0 0 chr6 119654979 119655040 -62760202 - L1ME4a LINE L1 -1 6120 6060 411 348 28 11 chr6 119655276 119655457 -62759785 + MIR SINE MIR 48 231 -31 842 149 8 22 chr6 119655467 119655601 -62759641 - FLAM_A SINE Alu 0 133 2 240 111 0 0 chr6 119655890 119655926 -62759316 + (T)n Simple_repeat Simple_repeat 1 36 0 319 116 0 0 chr6 119656016 119656059 -62759183 - L1PA15 LINE L1 -308 5857 5815 2221 104 0 0 chr6 119656128 119656417 -62758825 - AluSc SINE Alu -20 289 1 2414 95 39 0 chr6 119656417 119656755 -62758487 - L1PA15 LINE L1 -332 5829 5479 1683 115 13 0 chr6 119656755 119656972 -62758270 + L1PA14 LINE L1 5914 6142 -19 1908 160 0 3 chr6 119656997 119657297 -62757945 + AluJb SINE Alu 1 299 -13 908 178 121 85 chr6 119657415 119657600 -62757642 - Zaphod DNA AcHobo -29 4002 3825 1469 205 0 18 chr6 119657600 119657904 -62757338 - AluJb SINE Alu 0 303 5 908 178 121 85 chr6 119657904 119658105 -62757137 - Zaphod DNA AcHobo -206 3825 3601 21 0 0 0 chr6 119658132 119658153 -62757089 + AT_rich Low_complexity Low_complexity 1 21 0 2199 122 3 0 chr6 119658198 119658502 -62756740 + AluSp SINE Alu 1 305 -8 4028 158 108 48 chr6 119658503 119659897 -62755345 + L1MC1 LINE L1 4375 5859 -474 1903 154 14 0 chr6 119659901 119660193 -62755049 - AluJo SINE Alu -16 296 1 589 180 0 45 chr6 119660193 119660304 -62754938 - AluJo SINE Alu -8 304 199 289 167 0 50 chr6 119660309 119660369 -62754873 - AluJo SINE Alu -159 143 87 1586 145 55 10 chr6 119660369 119660659 -62754583 + L1MC1 LINE L1 5847 6149 -184 828 169 0 0 chr6 119660659 119660783 -62754459 + AluJb SINE Alu 1 124 -188 1246 152 15 5 chr6 119660788 119660986 -62754256 + L1MC1 LINE L1 6134 6333 0 2445 62 0 0 chr6 119661029 119661320 -62753922 - AluY SINE Alu -20 291 1 523 294 80 43 chr6 119661324 119661632 -62753610 + L1ME2 LINE L1 5845 6163 -1 1591 170 62 17 chr6 119661660 119661949 -62753293 - AluJo SINE Alu -10 302 1 1229 180 15 0 chr6 119662020 119662226 -62753016 + AluJo SINE Alu 82 290 -22 21 36 0 0 chr6 119662249 119662277 -62752965 + AT_rich Low_complexity Low_complexity 1 28 0 4703 162 61 11 chr6 119662281 119662427 -62752815 + L1MB7 LINE L1 4870 5007 -1177 1499 181 0 0 chr6 119662427 119662665 -62752577 + AluJo SINE Alu 44 281 -31 4703 162 61 11 chr6 119662665 119663276 -62751966 + L1MB7 LINE L1 5007 5586 -598 2417 48 14 3 chr6 119663276 119663566 -62751676 + AluY SINE Alu 1 293 -18 4703 162 61 11 chr6 119663566 119664047 -62751195 + L1MB7 LINE L1 5586 6175 -9 2199 252 143 0 chr6 119664055 119664742 -62750500 - Zaphod DNA AcHobo -3191 840 56 351 203 19 49 chr6 119665531 119665635 -62749607 + MIR SINE MIR 49 154 -63 950 67 8 0 chr6 119665644 119665763 -62749479 + AluSq/x SINE Alu 1 120 -193 924 241 98 27 chr6 119666355 119666683 -62748559 - HAL1 LINE L1 0 2507 2157 503 243 184 48 chr6 119666690 119666854 -62748388 + MIR SINE MIR 2 201 -61 1853 176 96 11 chr6 119666854 119667217 -62748025 + MSTD LTR MaLR 3 396 0 503 243 184 48 chr6 119667217 119667258 -62747984 + MIR SINE MIR 201 235 -27 189 74 0 0 chr6 119667281 119667308 -62747934 + (CAT)n Simple_repeat Simple_repeat 2 28 0 273 345 107 45 chr6 119668184 119668538 -62746704 + L2 LINE L2 2442 2817 -497 276 291 108 104 chr6 119668572 119668888 -62746354 + L2 LINE L2 2935 3251 -21 367 266 112 30 chr6 119668936 119669105 -62746137 - L3 LINE CR1 -693 884 702 * 709 172 16 8 chr6 119669103 119669231 -62746011 + L2 LINE L2 3184 3312 -1 2042 137 3 0 chr6 119670070 119670363 -62744879 + AluJb SINE Alu 1 294 -18 318 296 179 37 chr6 119670402 119670625 -62744617 + MIR SINE MIR 7 256 -6 2092 96 6 93 chr6 119671528 119671862 -62743380 + AluSq SINE Alu 1 305 -8 1489 159 63 73 chr6 119672015 119672317 -62742925 - AluJo SINE Alu -13 299 1 4928 156 87 90 chr6 119672405 119673075 -62742167 + L1MC3 LINE L1 6439 7110 -675 260 129 32 81 chr6 119673075 119673137 -62742105 + MLT1F1 LTR MaLR 50 108 -459 4928 156 87 90 chr6 119673137 119673733 -62741509 + L1MC3 LINE L1 7110 7765 -20 2298 86 0 0 chr6 119673733 119674034 -62741208 - AluSx SINE Alu 0 303 3 4928 156 87 90 chr6 119674034 119674055 -62741187 + L1MC3 LINE L1 7765 7785 0 2079 119 3 3 chr6 119674114 119674399 -62740843 - AluSg SINE Alu -25 285 1 794 126 0 0 chr6 119674528 119674671 -62740571 + L1MC3 LINE L1 6959 7101 -684 216 97 0 0 chr6 119674723 119674754 -62740488 + (A)n Simple_repeat Simple_repeat 1 31 0 28 0 0 0 chr6 119675037 119675065 -62740177 + AT_rich Low_complexity Low_complexity 1 28 0 1889 143 94 0 chr6 119675149 119675456 -62739786 - MER1B DNA MER1_type -3 336 1 1677 178 61 0 chr6 119675621 119675914 -62739328 + AluJb SINE Alu 1 311 -1 608 279 20 5 chr6 119676067 119676264 -62738978 - L1ME LINE L1 -369 5801 5602 * 2198 202 51 38 chr6 119676258 119677054 -62738188 - L1ME1 LINE L1 -320 5846 5053 1909 133 0 11 chr6 119677058 119677329 -62737913 - AluSx SINE Alu -14 298 31 2052 171 110 59 chr6 119677334 119677758 -62737484 - LTR28 LTR ERV1 -2 634 199 2173 139 0 0 chr6 119677758 119678068 -62737174 + AluSx SINE Alu 1 310 -2 2052 171 110 59 chr6 119678068 119678278 -62736964 - LTR28 LTR ERV1 -437 199 1 11880 155 26 48 chr6 119678280 119679964 -62735278 - HUERS-P3b LTR ERV1 -1 6995 5274 2826 7 0 0 chr6 119679964 119680268 -62734974 - AluYa5 SINE Alu -6 305 2 11880 155 26 48 chr6 119680268 119681295 -62733947 - HUERS-P3b LTR ERV1 -1722 5274 4225 1836 147 33 17 chr6 119681295 119681594 -62733648 + AluSx SINE Alu 1 304 -8 11880 155 26 48 chr6 119681594 119683170 -62732072 - HUERS-P3b LTR ERV1 -2771 4225 632 213 349 60 12 chr6 119683863 119683946 -62731296 + L2 LINE L2 3149 3235 -37 862 176 23 11 chr6 119683970 119684146 -62731096 - LTR36 LTR ERV1 0 611 434 293 116 0 0 chr6 119684201 119684244 -62730998 - LTR36 LTR ERV1 -276 335 293 226 253 27 0 chr6 119684301 119684376 -62730866 - LTR36 LTR ERV1 -335 276 200 225 0 0 0 chr6 119684439 119684464 -62730778 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 231 36 0 0 chr6 119684480 119684508 -62730734 + (GA)n Simple_repeat Simple_repeat 1 28 0 1581 174 0 21 chr6 119684511 119684792 -62730450 - AluJo SINE Alu -37 275 1 2191 119 0 0 chr6 119684802 119685097 -62730145 - AluSx SINE Alu -17 295 1 261 256 61 0 chr6 119685147 119685229 -62730013 + MIR SINE MIR 111 197 -65 2145 129 7 3 chr6 119686723 119687033 -62728209 - AluSx SINE Alu -1 311 1 23 0 0 0 chr6 119687198 119687221 -62728021 + AT_rich Low_complexity Low_complexity 1 23 0 2182 101 3 7 chr6 119687269 119687566 -62727676 - AluSx SINE Alu -16 296 1 1901 150 3 7 chr6 119687675 119687969 -62727273 + AluJb SINE Alu 3 295 -17 674 192 8 0 chr6 119688196 119688316 -62726926 + FLAM_C SINE Alu 9 129 -14 1565 199 4 0 chr6 119688399 119688661 -62726581 + AluJb SINE Alu 48 310 -2 386 264 157 10 chr6 119688861 119689058 -62726184 - MIR SINE MIR -15 247 22 3624 118 11 9 chr6 119690258 119690783 -62724459 + MER1A DNA MER1_type 2 527 0 22 0 0 0 chr6 119691128 119691150 -62724092 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 119691273 119691296 -62723946 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr6 119691436 119691478 -62723764 + AT_rich Low_complexity Low_complexity 1 42 0 1610 149 62 38 chr6 119692523 119692812 -62722430 - AluJo SINE Alu -16 296 1 694 198 32 0 chr6 119694714 119694840 -62720402 + FLAM_A SINE Alu 1 130 -3 486 165 157 58 chr6 119695265 119695386 -62719856 + AluJo SINE Alu 1 133 -169 477 183 226 0 chr6 119695829 119695944 -62719298 - FLAM_C SINE Alu -2 141 1 398 294 6 69 chr6 119696093 119696253 -62718989 - MIR SINE MIR -56 206 57 368 299 43 17 chr6 119696962 119697079 -62718163 - MIR SINE MIR -50 212 93 1880 162 0 17 chr6 119697079 119697375 -62717867 + AluJb SINE Alu 1 291 -21 1070 180 0 0 chr6 119697477 119697649 -62717593 + AluJo SINE Alu 136 307 -5 568 246 133 47 chr6 119697715 119697750 -62717492 + MIR SINE MIR 2 33 -229 2346 103 0 0 chr6 119697750 119698052 -62717190 + AluSq SINE Alu 1 302 -11 568 246 133 47 chr6 119698052 119698227 -62717015 + MIR SINE MIR 33 230 -32 2253 115 0 6 chr6 119698760 119699118 -62716124 - AluSx SINE Alu 0 356 1 234 91 0 0 chr6 119699124 119699157 -62716085 + (T)n Simple_repeat Simple_repeat 1 33 0 3136 253 49 31 chr6 119699170 119700319 -62714923 + L2 LINE L2 2003 3313 0 2224 102 7 0 chr6 119701302 119701597 -62713645 - AluSx SINE Alu -15 297 1 1880 164 3 13 chr6 119702721 119703020 -62712222 - AluJb SINE Alu -16 296 1 232 423 42 0 chr6 119704040 119704208 -62711034 - MIR SINE MIR -70 192 18 241 320 13 100 chr6 119704253 119704403 -62710839 - MIR SINE MIR -24 184 47 378 171 0 0 chr6 119705064 119705134 -62710108 + CT-rich Low_complexity Low_complexity 4 73 0 779 175 0 0 chr6 119705319 119705439 -62709803 - FLAM_C SINE Alu -13 120 1 355 310 21 56 chr6 119705639 119705781 -62709461 - MIR SINE MIR -73 189 53 303 316 189 31 chr6 119705871 119706099 -62709143 - L2 LINE L2 -24 3289 3026 2504 131 0 6 chr6 119706342 119706708 -62708534 - THE1B LTR MaLR 0 364 1 9847 100 33 35 chr6 119706708 119707840 -62707402 - THE1B-int LTR MaLR 0 1580 450 6973 54 11 8 chr6 119707840 119708963 -62706279 - L1PA7 LINE L1 -4 6150 5025 9847 100 33 35 chr6 119708963 119709413 -62705829 - THE1B-int LTR MaLR -1130 450 1 2690 110 0 0 chr6 119709413 119709777 -62705465 - THE1B LTR MaLR 0 364 1 767 171 8 0 chr6 119709846 119709969 -62705273 - FLAM_C SINE Alu -9 124 1 315 238 38 0 chr6 119710822 119710902 -62704340 + L2 LINE L2 3192 3274 -39 221 250 154 29 chr6 119711072 119711176 -62704066 - MIR SINE MIR -95 167 51 227 157 39 0 chr6 119711858 119711909 -62703333 - MER20B DNA MER1_type -57 726 674 266 173 49 12 chr6 119711946 119712027 -62703215 - MER20B DNA MER1_type -98 685 602 1395 153 136 0 chr6 119712035 119712343 -62702899 + L1MB3 LINE L1 5832 6181 -2 402 211 13 0 chr6 119712746 119712822 -62702420 - MER2 DNA MER2_type -1 344 268 787 168 174 66 chr6 119712837 119712899 -62702343 + AluJo SINE Alu 84 138 -174 1971 130 0 3 chr6 119712899 119713184 -62702058 + AluSx SINE Alu 28 311 -1 787 168 174 66 chr6 119713184 119713317 -62701925 + AluJo SINE Alu 138 300 -12 776 172 0 0 chr6 119713344 119713466 -62701776 + FLAM_C SINE Alu 1 122 -21 419 53 53 92 chr6 119713479 119713555 -62701687 + U3 snRNA snRNA 2 74 -143 1050 185 20 0 chr6 119713558 119713758 -62701484 - MER2 DNA MER2_type -136 209 6 2453 155 34 2 chr6 119714396 119714809 -62700433 - MSTB LTR MaLR 0 426 1 2043 137 3 0 chr6 119714822 119715115 -62700127 + AluSx SINE Alu 1 294 -18 2014 133 47 21 chr6 119715208 119715547 -62699695 - MER7A DNA MER2_type 0 346 1 2108 131 3 0 chr6 119715995 119716292 -62698950 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr6 119716306 119716328 -62698914 + AT_rich Low_complexity Low_complexity 1 22 0 1963 149 0 7 chr6 119719011 119719307 -62695935 + AluJo SINE Alu 1 294 -18 2503 81 0 0 chr6 119719424 119719734 -62695508 + AluSg SINE Alu 1 310 0 1868 116 56 4 chr6 119720269 119720572 -62694670 + AluSx SINE Alu 1 317 0 377 340 89 15 chr6 119720905 119721243 -62693999 - L2 LINE L2 -655 2659 2297 401 192 135 145 chr6 119721478 119721671 -62693571 + Charlie8 DNA MER1_type 24 214 -2203 955 247 22 13 chr6 119722347 119722578 -62692664 - MIR SINE MIR -28 234 2 2406 78 7 0 chr6 119722899 119723194 -62692048 - AluSx SINE Alu -15 297 1 2169 86 0 7 chr6 119723634 119723914 -62691328 - AluSp SINE Alu -1 312 35 242 282 81 48 chr6 119724270 119724394 -62690848 - L2 LINE L2 -7 3306 3179 1819 148 10 33 chr6 119724790 119725093 -62690149 - AluJb SINE Alu -16 296 1 2129 124 28 0 chr6 119725121 119725411 -62689831 + AluSx SINE Alu 1 298 -14 1353 104 149 45 chr6 119725468 119725737 -62689505 + L1MB7 LINE L1 5888 6184 0 1298 214 24 35 chr6 119725737 119726027 -62689215 + AluJo SINE Alu 1 287 -25 24 0 0 0 chr6 119726277 119726301 -62688941 + AT_rich Low_complexity Low_complexity 1 24 0 230 280 212 30 chr6 119726426 119726662 -62688580 - L2 LINE L2 -1161 2153 1875 603 220 19 25 chr6 119726923 119727082 -62688160 - MIR SINE MIR 0 262 105 305 209 121 33 chr6 119727317 119727408 -62687834 - L2 LINE L2 -1 3271 3173 437 270 72 55 chr6 119727426 119727572 -62687670 - L2 LINE L2 -410 2904 2762 2112 95 46 0 chr6 119727572 119727857 -62687385 + AluY SINE Alu 1 298 -13 437 270 72 55 chr6 119727857 119728017 -62687225 - L2 LINE L2 -552 2762 2593 199 222 93 0 chr6 119728960 119729014 -62686228 + MIR SINE MIR 20 78 -184 1921 186 0 0 chr6 119729328 119729635 -62685607 + AluJb SINE Alu 1 307 -5 2467 88 0 0 chr6 119731657 119731965 -62683277 + AluY SINE Alu 3 310 -1 1823 143 39 4 chr6 119732544 119732824 -62682418 + AluJo SINE Alu 5 294 -18 2376 57 3 41 chr6 119733216 119733532 -62681710 - AluY SINE Alu -7 304 1 754 211 34 11 chr6 119734011 119734186 -62681056 + MIR SINE MIR 84 262 0 2349 60 0 3 chr6 119734251 119734567 -62680675 - AluY SINE Alu 0 315 1 264 254 56 14 chr6 119734728 119734799 -62680443 + L2 LINE L2 3210 3283 -30 2073 122 3 0 chr6 119735115 119735401 -62679841 + AluSx SINE Alu 1 287 -25 1535 157 34 27 chr6 119736089 119736351 -62678891 + AluJb SINE Alu 33 296 -16 2337 171 20 27 chr6 119736439 119736615 -62678627 + L1MB5 LINE L1 5729 5905 -269 1765 158 7 30 chr6 119736615 119736913 -62678329 + AluJb SINE Alu 1 291 -21 2337 171 20 27 chr6 119736913 119737174 -62678068 + L1MB5 LINE L1 5905 6163 -11 25 31 0 0 chr6 119738182 119738214 -62677028 + AT_rich Low_complexity Low_complexity 1 32 0 1958 163 3 3 chr6 119738281 119738576 -62676666 + AluJb SINE Alu 1 295 -17 976 131 0 0 chr6 119740635 119740772 -62674470 + FLAM_C SINE Alu 1 137 -6 1684 177 26 10 chr6 119740775 119741080 -62674162 + AluJo SINE Alu 1 310 -2 2099 113 20 3 chr6 119742090 119742390 -62672852 + AluSx SINE Alu 1 305 -7 1840 143 24 7 chr6 119743667 119743960 -62671282 + AluJb SINE Alu 1 298 -14 2345 89 3 0 chr6 119745565 119745867 -62669375 + AluSp SINE Alu 1 303 -10 25 31 0 0 chr6 119745977 119746009 -62669233 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 119746453 119746482 -62668760 + AT_rich Low_complexity Low_complexity 1 29 0 641 95 0 0 chr6 119746646 119746730 -62668512 + AluJ/FLAM SINE Alu 2 85 -227 1946 132 48 0 chr6 119746796 119747091 -62668151 - AluSc SINE Alu 0 309 1 30 59 0 0 chr6 119747581 119747632 -62667610 + AT_rich Low_complexity Low_complexity 1 51 0 2171 113 3 7 chr6 119748686 119748987 -62666255 - AluSq SINE Alu -13 300 1 235 307 105 9 chr6 119749129 119749243 -62665999 - L3 LINE CR1 -65 1512 1388 339 179 98 54 chr6 119749635 119749747 -62665495 + L2 LINE L2 1597 1713 -1601 2401 87 0 6 chr6 119749750 119750062 -62665180 - AluSg SINE Alu 0 310 1 898 151 0 0 chr6 119750070 119750196 -62665046 - FLAM_C SINE Alu -17 126 1 1823 232 331 9 chr6 119750264 119751173 -62664069 + L2 LINE L2 1796 3034 -279 6428 130 11 14 chr6 119751176 119752351 -62662891 + L1PB1 LINE L1 4435 5611 -540 2588 58 0 10 chr6 119752351 119752664 -62662578 + AluY SINE Alu 1 310 -1 6428 130 11 14 chr6 119752664 119753203 -62662039 + L1PB1 LINE L1 5611 6145 -6 2339 89 7 0 chr6 119753203 119753495 -62661747 - AluSx SINE Alu -18 294 1 785 228 81 44 chr6 119753519 119753632 -62661610 + L2 LINE L2 3032 3139 -174 1856 159 9 25 chr6 119753632 119753947 -62661295 - AluJo SINE Alu -2 310 1 1745 184 0 10 chr6 119753954 119754263 -62660979 - AluJo SINE Alu 0 312 7 785 228 81 44 chr6 119754263 119754413 -62660829 + L2 LINE L2 3144 3313 0 882 226 56 26 chr6 119754620 119754854 -62660388 + L1MC4a LINE L1 6442 6682 -1126 256 119 51 85 chr6 119755198 119755257 -62659985 - MLT1K LTR MaLR -15 573 517 707 287 86 25 chr6 119755305 119755619 -62659623 - MLT1K LTR MaLR -246 342 10 568 255 71 26 chr6 119755633 119755900 -62659342 - L1ME4a LINE L1 -274 5847 5569 1380 118 52 66 chr6 119756016 119756065 -62659177 - L1MB3 LINE L1 0 6183 6135 611 226 8 32 chr6 119756065 119756189 -62659053 - FLAM_A SINE Alu -8 125 5 1380 118 52 66 chr6 119756189 119756428 -62658814 - L1MB3 LINE L1 -48 6135 5899 243 214 71 56 chr6 119756428 119756548 -62658694 - L1ME4a LINE L1 -698 5423 5302 216 188 0 43 chr6 119756608 119756677 -62658565 + T-rich Low_complexity Low_complexity 3 68 0 292 152 0 0 chr6 119756677 119756723 -62658519 - MER57A LTR ERV1 -67 336 291 23 54 0 0 chr6 119756724 119756761 -62658481 + AT_rich Low_complexity Low_complexity 1 37 0 344 189 14 0 chr6 119756767 119756820 -62658422 - MLT1A1 LTR MaLR 0 365 309 1905 160 0 7 chr6 119756820 119757114 -62658128 - AluJb SINE Alu -20 292 1 344 189 14 0 chr6 119757114 119757134 -62658108 - MLT1A1 LTR MaLR -56 309 291 2057 118 0 11 chr6 119757158 119757445 -62657797 - AluSx SINE Alu -28 284 1 1598 192 24 39 chr6 119757445 119757699 -62657543 - MLT1A1 LTR MaLR -37 328 79 2217 112 3 10 chr6 119757699 119758004 -62657238 - AluSx SINE Alu -9 303 1 1598 192 24 39 chr6 119758004 119758082 -62657160 - MLT1A1 LTR MaLR -286 79 1 2514 57 3 0 chr6 119758259 119758559 -62656683 + AluY SINE Alu 1 301 -10 1882 167 0 0 chr6 119758569 119758862 -62656380 + AluJb SINE Alu 1 293 -19 1290 152 70 25 chr6 119758862 119759075 -62656167 - Tigger2 DNA MER2_type -4 2714 2487 1889 149 7 10 chr6 119759075 119759377 -62655865 - AluJo SINE Alu -11 301 1 1290 152 70 25 chr6 119759377 119759406 -62655836 - Tigger2 DNA MER2_type -231 2487 2461 1194 141 5 0 chr6 119759457 119759641 -62655601 - Tigger2 DNA MER2_type -1961 757 573 3546 161 80 18 chr6 119759641 119760313 -62654929 - MER72 LTR ERV1 0 722 9 3295 148 23 21 chr6 119760317 119760892 -62654350 - Tigger2 DNA MER2_type -2142 576 1 786 209 0 16 chr6 119761212 119761341 -62653901 - FLAM_A SINE Alu -15 127 1 603 288 166 10 chr6 119761361 119761747 -62653495 - HAL1b LINE L1 -497 851 406 858 354 49 17 chr6 119761747 119762275 -62652967 - ERVL LTR ERVL -4487 1277 733 2120 118 0 3 chr6 119762664 119762961 -62652281 + AluSc SINE Alu 1 296 -13 1157 217 151 42 chr6 119763022 119763405 -62651837 + MER20B DNA MER1_type 92 516 -267 22 0 0 0 chr6 119763959 119763981 -62651261 + AT_rich Low_complexity Low_complexity 1 22 0 1364 111 0 30 chr6 119764006 119764205 -62651037 - AluSg/x SINE Alu -12 300 108 324 122 0 0 chr6 119764305 119764354 -62650888 + MER50 LTR ERV1 391 439 -295 1776 174 0 0 chr6 119764354 119764663 -62650579 + AluSx SINE Alu 1 309 0 1898 107 0 37 chr6 119764977 119765247 -62649995 + AluSq SINE Alu 11 270 -43 340 138 35 0 chr6 119765273 119765331 -62649911 + AluSp/q SINE Alu 241 300 -3 1724 166 7 30 chr6 119765338 119765639 -62649603 + AluJb SINE Alu 1 294 -18 2024 87 3 84 chr6 119765935 119766256 -62648986 - AluSx SINE Alu -13 299 5 967 165 25 0 chr6 119766630 119766788 -62648454 + FRAM SINE Alu 1 157 -19 1968 126 28 0 chr6 119767204 119767490 -62647752 + AluSg SINE Alu 1 294 -16 375 237 21 31 chr6 119768623 119768720 -62646522 + MIR SINE MIR 45 140 -68 1872 108 51 14 chr6 119768823 119769119 -62646123 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 119769799 119769821 -62645421 + AT_rich Low_complexity Low_complexity 1 22 0 506 358 89 15 chr6 119770148 119770690 -62644552 - L1MC4 LINE L1 -138 7904 7323 212 0 36 0 chr6 119770690 119770718 -62644524 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 463 244 128 71 chr6 119770759 119771351 -62643891 - L1MC4 LINE L1 -753 7208 6633 189 0 0 0 chr6 119771432 119771453 -62643789 + (T)n Simple_repeat Simple_repeat 1 21 0 222 191 0 0 chr6 119771842 119771889 -62643353 + (TG)n Simple_repeat Simple_repeat 1 47 0 297 213 82 41 chr6 119773584 119773706 -62641536 - L1ME4a LINE L1 -248 5873 5747 246 313 45 22 chr6 119774152 119774286 -62640956 - L2 LINE L2 -191 3081 2945 304 252 146 0 chr6 119775067 119775190 -62640052 - MER103 DNA DNA -23 143 3 1248 156 19 47 chr6 119776584 119776840 -62638402 - AluJo SINE Alu -17 295 47 2267 91 3 7 chr6 119777670 119777966 -62637276 + AluSg SINE Alu 1 295 -15 187 214 119 48 chr6 119778159 119778243 -62636999 - L2 LINE L2 -42 3230 3141 34 55 0 14 chr6 119778515 119778530 -62636712 + AT_rich Low_complexity Low_complexity 1 15 -57 2101 80 15 0 chr6 119778530 119778792 -62636450 + AluY SINE Alu 26 291 -20 34 55 0 14 chr6 119778792 119778849 -62636393 + AT_rich Low_complexity Low_complexity 15 72 0 21 36 0 0 chr6 119778980 119779008 -62636234 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 119779938 119779959 -62635283 + AT_rich Low_complexity Low_complexity 1 21 0 2001 100 86 0 chr6 119780603 119780883 -62634359 + AluSx SINE Alu 1 304 -8 3788 134 116 15 chr6 119782450 119782796 -62632446 - Tigger3(Golem) DNA MER2_type -1 3027 2717 188 86 29 0 chr6 119782796 119782831 -62632411 + (TGAG)n Simple_repeat Simple_repeat 4 39 0 3788 134 116 15 chr6 119782831 119783209 -62632033 - Tigger3(Golem) DNA MER2_type -311 2717 2230 2131 98 0 53 chr6 119783399 119783717 -62631525 - AluSx SINE Alu -7 305 5 2039 142 20 0 chr6 119783724 119784019 -62631223 - AluSx SINE Alu -11 301 1 228 310 46 11 chr6 119784386 119784473 -62630769 + MIR SINE MIR 82 171 -91 400 257 0 10 chr6 119784800 119784901 -62630341 + L2 LINE L2 3210 3309 -4 476 302 77 58 chr6 119785542 119786046 -62629196 - L2 LINE L2 -55 3258 2742 1736 198 64 11 chr6 119786050 119786504 -62628738 + Charlie1b DNA MER1_type 37 514 -9 503 300 100 0 chr6 119786505 119786735 -62628507 - L2 LINE L2 -582 2732 2480 185 258 16 48 chr6 119786768 119786830 -62628412 - L2 LINE L2 -925 2389 2330 22 0 0 0 chr6 119786909 119786931 -62628311 + AT_rich Low_complexity Low_complexity 1 22 0 2013 100 33 0 chr6 119787362 119787659 -62627583 + AluSg1 SINE Alu 3 308 0 357 271 82 53 chr6 119788329 119788499 -62626743 - MIR3 SINE MIR -25 183 9 22 0 0 0 chr6 119788977 119788999 -62626243 + AT_rich Low_complexity Low_complexity 1 22 0 1085 141 87 0 chr6 119788999 119789184 -62626058 - AluJb SINE Alu -25 287 87 499 239 28 22 chr6 119789243 119789391 -62625851 - L1MC4a LINE L1 -86 7722 7587 1804 199 183 23 chr6 119789476 119789723 -62625519 - L1MC4a LINE L1 -223 7585 7379 2316 87 0 0 chr6 119789723 119790022 -62625220 - AluY SINE Alu -12 299 1 1804 199 183 23 chr6 119790022 119790347 -62624895 - L1MC4a LINE L1 -429 7379 6921 21 36 0 0 chr6 119790747 119790775 -62624467 + AT_rich Low_complexity Low_complexity 1 28 0 1987 152 25 39 chr6 119791311 119791719 -62623523 - L1MA4A LINE L1 -2 6301 5900 2135 96 0 30 chr6 119792551 119792852 -62622390 + AluSq SINE Alu 1 292 -21 311 253 48 0 chr6 119794088 119794171 -62621071 + L1MC4 LINE L1 6610 6696 -1346 2140 127 0 0 chr6 119794171 119794463 -62620779 - AluSx SINE Alu -20 292 1 258 311 126 67 chr6 119795294 119795564 -62619678 + L3 LINE CR1 925 1210 -367 21 36 0 0 chr6 119795643 119795671 -62619571 + AT_rich Low_complexity Low_complexity 1 28 0 256 276 129 60 chr6 119796166 119796282 -62618960 - MIR3 SINE MIR -48 160 37 286 239 0 0 chr6 119796626 119796697 -62618545 - L2 LINE L2 -11 3261 3191 2263 109 0 0 chr6 119796829 119797132 -62618110 - AluSq SINE Alu -9 304 2 230 267 155 15 chr6 119797267 119797473 -62617769 - L1 LINE L1 -2269 3877 3643 21 0 0 0 chr6 119797503 119797524 -62617718 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 119798164 119798193 -62617049 + AT_rich Low_complexity Low_complexity 1 29 0 327 318 226 10 chr6 119798522 119798934 -62616308 + L2 LINE L2 1836 2336 -978 320 220 176 0 chr6 119799839 119799930 -62615312 + MIR3 SINE MIR 87 193 -15 916 322 127 13 chr6 119800047 119800530 -62614712 + L2 LINE L2 2772 3308 -5 659 224 89 39 chr6 119801554 119801733 -62613509 + MER5A DNA MER1_type 1 188 -1 322 411 64 99 chr6 119801813 119802297 -62612945 - L2 LINE L2 -40 3273 2807 293 125 0 0 chr6 119802363 119802403 -62612839 - U2 snRNA snRNA -148 40 1 379 268 87 8 chr6 119802406 119802533 -62612709 + MIR SINE MIR 80 216 -46 437 260 30 0 chr6 119802556 119802656 -62612586 + L2 LINE L2 3200 3302 -11 341 212 24 40 chr6 119803161 119803258 -62611984 - MLT1J2 LTR MaLR -16 579 290 1089 162 17 81 chr6 119803454 119803688 -62611554 + MER20 DNA MER1_type 1 219 0 976 124 0 0 chr6 119806296 119806433 -62608809 - FLAM_C SINE Alu -6 137 1 190 387 0 0 chr6 119806955 119807017 -62608225 - L2 LINE L2 -692 2622 2561 282 354 0 23 chr6 119807485 119807615 -62607627 + MIR SINE MIR 127 253 -9 8790 216 49 25 chr6 119808515 119809524 -62605718 + L1 LINE L1 3115 4099 -2047 2034 118 16 10 chr6 119809524 119809828 -62605414 + AluSx SINE Alu 1 306 -6 8790 216 49 25 chr6 119809828 119810019 -62605223 + L1 LINE L1 4099 4284 -1862 2064 120 3 13 chr6 119810019 119810319 -62604923 + AluSq SINE Alu 1 297 -16 8790 216 49 25 chr6 119810319 119811353 -62603889 + L1 LINE L1 4284 5403 -743 546 142 183 8 chr6 119811393 119811513 -62603729 + L1MA9 LINE L1 6168 6308 -4 21 0 0 0 chr6 119811842 119811863 -62603379 + AT_rich Low_complexity Low_complexity 1 21 0 292 197 106 0 chr6 119811977 119812042 -62603200 + Tigger5 DNA MER2_type 7 78 -2245 355 215 13 13 chr6 119812042 119812121 -62603121 - Tigger5 DNA MER2_type -3 2320 2242 * 358 164 0 16 chr6 119812117 119812178 -62603064 + Tigger5 DNA MER2_type 2264 2323 0 194 288 0 68 chr6 119813766 119813839 -62601403 + L2 LINE L2 3204 3271 -1 355 367 66 39 chr6 119814584 119814840 -62600402 + L1MEd LINE L1 551 813 -5306 461 215 188 0 chr6 119815440 119815584 -62599658 - MLT1J2 LTR MaLR -276 174 4 1991 125 7 0 chr6 119815628 119815927 -62599315 + AluSx SINE Alu 1 301 0 552 246 75 11 chr6 119815960 119816147 -62599095 - MIR SINE MIR -10 252 54 222 260 29 48 chr6 119816161 119816265 -62598977 + MIR SINE MIR 161 262 0 237 355 56 0 chr6 119816897 119817004 -62598238 - MIR SINE MIR 0 262 150 1501 111 7 33 chr6 119817004 119817422 -62597820 - MER4C LTR ERV1 0 465 1 214 247 14 14 chr6 119817422 119817495 -62597747 - MIR SINE MIR -109 153 81 420 111 0 0 chr6 119819026 119819089 -62596153 + (TG)n Simple_repeat Simple_repeat 2 64 0 2037 130 3 3 chr6 119819330 119819623 -62595619 - AluSx SINE Alu -19 293 1 308 280 261 8 chr6 119821515 119821710 -62593532 - MIR SINE MIR -13 249 12 2145 127 0 3 chr6 119823408 119823707 -62591535 - AluSx SINE Alu -14 298 1 21 0 0 0 chr6 119824484 119824505 -62590737 + GC_rich Low_complexity Low_complexity 1 21 0 205 186 0 0 chr6 119824994 119825037 -62590205 + A-rich Low_complexity Low_complexity 1 43 0 1657 187 35 0 chr6 119825556 119825839 -62589403 - AluJb SINE Alu -19 293 1 269 372 28 0 chr6 119825845 119825990 -62589252 + MIR SINE MIR 98 246 -16 504 284 106 62 chr6 119826000 119826566 -62588676 - L2 LINE L2 -13 3300 2696 2329 71 7 3 chr6 119826572 119826866 -62588376 + AluSp SINE Alu 2 296 -17 337 174 87 0 chr6 119826964 119827033 -62588209 - MER116 DNA Mariner -3 77 3 573 275 82 24 chr6 119827079 119827286 -62587956 + MIR SINE MIR 31 249 -13 26 30 0 0 chr6 119828466 119828499 -62586743 + GC_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr6 119831236 119831279 -62583963 + AT_rich Low_complexity Low_complexity 1 43 0 30 0 0 0 chr6 119831357 119831387 -62583855 + AT_rich Low_complexity Low_complexity 1 30 0 202 111 0 67 chr6 119831567 119831612 -62583630 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 309 159 0 0 chr6 119833251 119833314 -62581928 + T-rich Low_complexity Low_complexity 1 63 0 314 262 67 60 chr6 119834958 119835107 -62580135 + L1ME LINE L1 5526 5675 -446 2179 95 3 0 chr6 119835242 119835537 -62579705 - AluY SINE Alu -15 296 1 395 214 21 62 chr6 119836695 119836840 -62578402 - Charlie2 DNA MER1_type -765 2097 1959 222 192 0 0 chr6 119838126 119838178 -62577064 + (TATG)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr6 119838366 119838387 -62576855 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 119838909 119838936 -62576306 + AT_rich Low_complexity Low_complexity 1 27 0 228 336 76 33 chr6 119839243 119839454 -62575788 - LTR16A LTR ERVL -214 236 17 1402 136 23 0 chr6 119839478 119839699 -62575543 + MER30 DNA MER1_type 1 226 -4 617 339 149 25 chr6 119840187 119840703 -62574539 + MLT1G1 LTR MaLR 16 595 0 670 378 62 18 chr6 119840736 119841533 -62573709 - ERVL LTR ERVL -765 4999 4168 604 231 23 79 chr6 119841705 119841921 -62573321 + MLT1A1 LTR MaLR 157 360 -5 322 338 90 23 chr6 119842118 119842384 -62572858 - HAL1 LINE L1 -856 1651 1368 243 61 0 0 chr6 119843715 119843748 -62571494 + (CA)n Simple_repeat Simple_repeat 2 34 0 2067 111 14 7 chr6 119844066 119844354 -62570888 - AluSx SINE Alu -20 292 3 22 0 0 0 chr6 119844630 119844652 -62570590 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 119844822 119844845 -62570397 + AT_rich Low_complexity Low_complexity 1 23 0 893 217 139 43 chr6 119846092 119846406 -62568836 - MLT1A2 LTR MaLR 0 467 27 346 94 31 0 chr6 119846577 119846641 -62568601 + CT-rich Low_complexity Low_complexity 3 68 0 1337 224 31 14 chr6 119846768 119847054 -62568188 + AluJb SINE Alu 13 303 -9 518 258 66 20 chr6 119847162 119847360 -62567882 - MER3 DNA MER1_type 0 209 3 2018 95 0 0 chr6 119849187 119849449 -62565793 - AluSc SINE Alu -17 292 31 302 197 120 49 chr6 119849855 119849997 -62565245 - LTR50 LTR ERVL -6 789 638 382 319 45 0 chr6 119850103 119850260 -62564982 - LTR50 LTR ERVL -631 164 1 222 91 0 0 chr6 119850593 119850626 -62564616 + (CA)n Simple_repeat Simple_repeat 2 34 0 264 143 43 0 chr6 119850627 119850697 -62564545 + (TA)n Simple_repeat Simple_repeat 1 73 0 238 313 90 22 chr6 119851573 119851707 -62563535 - MIR SINE MIR -56 206 64 1841 164 0 3 chr6 119852369 119852661 -62562581 + AluJb SINE Alu 7 297 -15 2057 96 0 0 chr6 119852833 119853114 -62562128 + L1PA14 LINE L1 5867 6147 -14 29 28 0 0 chr6 119853116 119853152 -62562090 + AT_rich Low_complexity Low_complexity 1 36 0 200 108 0 27 chr6 119853368 119853405 -62561837 + (TC)n Simple_repeat Simple_repeat 1 36 0 373 316 128 26 chr6 119853498 119853849 -62561393 + L1M4 LINE L1 2147 2533 -3613 1601 161 0 0 chr6 119853888 119854131 -62561111 + AluSq SINE Alu 1 243 -70 3120 54 6 0 chr6 119854271 119854902 -62560340 - L1P2 LINE L1 -505 5649 5015 951 308 58 26 chr6 119855146 119855650 -62559592 - L1ME3A LINE L1 -316 5854 5335 386 286 75 25 chr6 119855651 119855892 -62559350 - L1ME3A LINE L1 -913 5233 4981 216 135 0 0 chr6 119856217 119856254 -62558988 + (TG)n Simple_repeat Simple_repeat 1 37 0 923 242 98 17 chr6 119856551 119857054 -62558188 - MLT1E3 LTR MaLR 0 624 51 1197 251 133 3 chr6 119857160 119857483 -62557759 + MLT1A1 LTR MaLR 1 365 0 2095 133 77 29 chr6 119857828 119857934 -62557308 - L1MA2 LINE L1 -23 6281 6182 2105 123 0 7 chr6 119857934 119858243 -62556999 - AluY SINE Alu -3 308 2 2095 133 77 29 chr6 119858243 119858551 -62556691 - L1MA2 LINE L1 -122 6182 5847 1516 198 131 45 chr6 119858622 119859071 -62556171 - MLT1D LTR MaLR -17 488 1 968 205 73 15 chr6 119860107 119860312 -62554930 + MER58A DNA MER1_type 8 224 0 657 232 40 10 chr6 119860592 119860790 -62554452 - MER113 DNA MER1_type? -314 207 4 197 303 225 11 chr6 119860939 119861117 -62554125 + L3b LINE CR1 1162 1377 -206 425 333 75 10 chr6 119861436 119861637 -62553605 - MIR SINE MIR -21 241 28 345 61 0 0 chr6 119863021 119863070 -62552172 - L1MA3 LINE L1 -5 6300 6252 1210 251 7 7 chr6 119863070 119863369 -62551873 - AluJb SINE Alu -13 299 1 304 338 45 25 chr6 119863380 119863578 -62551664 + L1M4 LINE L1 2610 2811 -3335 527 139 10 0 chr6 119864009 119864110 -62551132 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 6814 150 36 40 chr6 119864137 119865438 -62549804 + Tigger1 DNA MER2_type 4 1299 -1119 3784 72 16 8 chr6 119866344 119866869 -62548373 + L1PA7 LINE L1 5638 6166 0 777 311 92 10 chr6 119867197 119867676 -62547566 - L1ME3A LINE L1 -2 6168 5651 527 224 32 82 chr6 119868077 119868296 -62546946 + L2 LINE L2 3103 3310 -3 744 267 180 66 chr6 119869959 119870386 -62544856 + MLT2F LTR ERVL 186 661 -2 218 307 40 0 chr6 119870577 119870652 -62544590 - L2 LINE L2 -673 2641 2564 265 125 0 0 chr6 119870863 119870903 -62544339 - MADE1 DNA Mariner -40 40 1 667 211 47 42 chr6 119871574 119871764 -62543478 - L1M2 LINE L1 -596 5695 5505 500 185 99 27 chr6 119871786 119871955 -62543287 + L1MD2 LINE L1 5739 5916 -255 4350 182 3 4 chr6 119871955 119872709 -62542533 - ERVL LTR ERVL -382 5382 4630 288 0 0 0 chr6 119872721 119872753 -62542489 + (TG)n Simple_repeat Simple_repeat 2 33 0 1578 177 26 7 chr6 119872757 119873062 -62542180 + ERVL LTR ERVL 5443 5753 -11 536 215 92 56 chr6 119872922 119873117 -62542125 + Ricksha DNA DNA 185 386 -868 * 695 80 0 180 chr6 119873120 119873270 -62541972 - MER1B DNA MER1_type 0 339 217 303 235 94 0 chr6 119873418 119873503 -62541739 + MLT1E1 LTR MaLR 5 97 -557 536 232 238 4 chr6 119873530 119873837 -62541405 + MLT1E1 LTR MaLR 178 412 -242 195 42 0 0 chr6 119873837 119873861 -62541381 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 536 232 238 4 chr6 119873861 119873906 -62541336 + MLT1E1 LTR MaLR 412 652 -2 613 285 0 22 chr6 119874120 119874299 -62540943 - MIR SINE MIR -56 206 32 24 0 0 0 chr6 119874479 119874503 -62540739 + AT_rich Low_complexity Low_complexity 1 24 0 1855 131 54 14 chr6 119874804 119875101 -62540141 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr6 119875279 119875301 -62539941 + AT_rich Low_complexity Low_complexity 1 22 0 1661 162 4 4 chr6 119875551 119875822 -62539420 - L1MB1 LINE L1 -150 6018 5748 1247 165 9 104 chr6 119875820 119876003 -62539239 + L1MA10 LINE L1 6046 6188 -146 * 2428 154 8 11 chr6 119876003 119876379 -62538863 - THE1C LTR MaLR 0 375 1 1247 165 9 104 chr6 119876379 119876511 -62538731 + L1MA10 LINE L1 6188 6331 -3 1629 204 102 6 chr6 119876717 119877069 -62538173 + MLT1B LTR MaLR 1 386 -4 460 240 160 2 chr6 119880472 119880636 -62534606 + MIR SINE MIR 9 192 -61 321 206 81 119 chr6 119880929 119881089 -62534153 - MIR3 SINE MIR -46 162 9 400 265 145 24 chr6 119881132 119881298 -62533944 - MER5A DNA MER1_type 0 189 4 382 359 0 21 chr6 119881528 119881673 -62533569 + MER91A DNA MER1_type 55 196 0 266 254 0 0 chr6 119883607 119883666 -62531576 + MIR SINE MIR 93 151 -111 484 279 161 6 chr6 119885256 119885417 -62529825 - MIR3 SINE MIR -3 205 20 241 224 20 0 chr6 119885665 119885714 -62529528 + GA-rich Low_complexity Low_complexity 4 53 0 561 282 235 10 chr6 119886320 119886614 -62528628 - MLT1J2 LTR MaLR -18 432 73 2294 172 57 18 chr6 119887121 119887558 -62527684 + MLT1C LTR MaLR 11 464 -3 24 0 0 0 chr6 119887994 119888018 -62527224 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 119888298 119888327 -62526915 + AT_rich Low_complexity Low_complexity 1 29 0 738 296 84 12 chr6 119888361 119888682 -62526560 - MER115 DNA AcHobo 0 693 350 7900 38 2 0 chr6 119889352 119890291 -62524951 + L1PA4 LINE L1 5213 6153 -2 1804 60 0 17 chr6 119890291 119890525 -62524717 + L1P3 LINE L1 5432 5661 -493 2062 115 44 10 chr6 119890780 119891075 -62524167 - AluSx SINE Alu -7 305 1 22 35 0 0 chr6 119891171 119891200 -62524042 + AT_rich Low_complexity Low_complexity 1 29 0 1015 220 23 5 chr6 119891704 119891922 -62523320 + MER58 DNA MER1_type 1 222 -2198 29 0 0 0 chr6 119893673 119893702 -62521540 + AT_rich Low_complexity Low_complexity 1 29 0 2756 20 0 0 chr6 119893872 119894177 -62521065 - AluYa5 SINE Alu -6 305 1 260 191 26 9 chr6 119894251 119894366 -62520876 + (TA)n Simple_repeat Simple_repeat 1 117 0 2026 149 0 0 chr6 119894366 119894654 -62520588 - AluSx SINE Alu -24 288 1 1831 121 0 32 chr6 119894954 119895235 -62520007 + AluSq SINE Alu 13 284 -29 1372 132 0 0 chr6 119895342 119895539 -62519703 + AluSg/x SINE Alu 109 305 -7 23 33 0 0 chr6 119895961 119895991 -62519251 + AT_rich Low_complexity Low_complexity 1 30 0 2147 128 3 0 chr6 119896180 119896477 -62518765 + AluJb SINE Alu 1 298 -14 760 134 125 0 chr6 119896705 119896817 -62518425 - FLAM_C SINE Alu -16 127 2 521 160 32 0 chr6 119896817 119896911 -62518331 - L1MB4 LINE L1 -38 6142 6046 738 152 7 43 chr6 119896930 119897068 -62518174 - FLAM_C SINE Alu 0 133 1 352 299 38 13 chr6 119897080 119897237 -62518005 - L1ME LINE L1 -369 5752 5592 751 201 101 6 chr6 119897682 119897851 -62517391 - LTR41 LTR ERVL -585 188 4 1103 247 5 0 chr6 119898544 119898767 -62516475 - MER58A DNA MER1_type 0 224 1 678 143 19 0 chr6 119899543 119899648 -62515594 - AluSx SINE Alu -15 295 189 1005 106 0 0 chr6 119899649 119899781 -62515461 - AluSx SINE Alu -181 132 1 1584 187 11 4 chr6 119900190 119900468 -62514774 + AluJb SINE Alu 1 280 -32 1125 159 6 0 chr6 119900625 119900788 -62514454 + FRAM SINE Alu 1 164 -2 207 286 0 0 chr6 119901015 119901064 -62514178 - L3b LINE CR1 -13 1570 1522 1463 276 222 18 chr6 119901149 119902254 -62512988 + L2 LINE L2 1974 3311 -2 1456 117 28 0 chr6 119902611 119902824 -62512418 + AluJb SINE Alu 84 302 -10 8222 50 11 1 chr6 119902843 119903799 -62511443 - LTR5 LTR ERVK -3 966 1 211 93 47 0 chr6 119903800 119903843 -62511399 + GA-rich Low_complexity Low_complexity 4 48 0 24 32 0 0 chr6 119903889 119903920 -62511322 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr6 119904552 119904574 -62510668 + (T)n Simple_repeat Simple_repeat 1 22 0 24 0 0 0 chr6 119904722 119904746 -62510496 + AT_rich Low_complexity Low_complexity 1 24 0 279 0 0 0 chr6 119905027 119905058 -62510184 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 347 263 82 107 chr6 119905123 119905366 -62509876 + L1ME LINE L1 508 744 -5786 * 558 174 141 0 chr6 119905358 119905479 -62509763 + L1ME LINE L1 1854 1991 -4549 2334 63 7 0 chr6 119905489 119905821 -62509421 + AluSg SINE Alu 1 310 0 907 119 0 8 chr6 119905826 119905952 -62509290 + AluSq/x SINE Alu 1 125 -188 281 150 67 0 chr6 119905952 119906012 -62509230 + Alu SINE Alu 236 299 -1 1325 7 27 0 chr6 119906252 119906398 -62508844 + L1PA4 LINE L1 6004 6153 -2 285 296 112 16 chr6 119906540 119906665 -62508577 + MIR SINE MIR 69 205 -57 427 206 65 19 chr6 119907495 119907602 -62507640 + MIR SINE MIR 39 150 -112 2433 63 7 0 chr6 119907655 119907954 -62507288 - AluSx SINE Alu -11 301 1 393 226 54 11 chr6 119908116 119908209 -62507033 - MIR SINE MIR -55 153 57 1179 191 46 25 chr6 119909086 119909327 -62505915 - AluJo SINE Alu -66 246 1 23 0 0 29 chr6 119909327 119909343 -62505899 + AT_rich Low_complexity Low_complexity 1 16 -17 2310 89 0 0 chr6 119909343 119909635 -62505607 - AluSg SINE Alu -18 292 1 23 0 0 29 chr6 119909635 119909652 -62505590 + AT_rich Low_complexity Low_complexity 16 33 0 21 0 0 0 chr6 119909786 119909807 -62505435 + AT_rich Low_complexity Low_complexity 1 21 0 1784 143 35 18 chr6 119910683 119910969 -62504273 - AluJb SINE Alu -19 293 3 2466 74 3 0 chr6 119912251 119912547 -62502695 + AluY SINE Alu 1 297 -14 1852 114 4 0 chr6 119912560 119912814 -62502428 + AluSp SINE Alu 6 260 -53 39 0 0 0 chr6 119913266 119913305 -62501937 + AT_rich Low_complexity Low_complexity 1 39 0 2332 69 7 7 chr6 119915283 119915574 -62499668 + AluY SINE Alu 1 291 -20 576 137 66 93 chr6 119916013 119916195 -62499047 + MER104 DNA MER2_type 1 177 -3 2094 135 0 26 chr6 119916931 119917243 -62497999 - AluSx SINE Alu -8 304 1 314 197 0 0 chr6 119917655 119917716 -62497526 - MLT1E1 LTR MaLR -6 648 588 989 216 148 43 chr6 119917787 119918092 -62497150 - MLT1E LTR MaLR -256 337 1 779 187 0 8 chr6 119918145 119918268 -62496974 + FLAM_A SINE Alu 1 122 -11 2535 40 7 13 chr6 119918303 119918604 -62496638 + AluY SINE Alu 1 299 -12 602 115 48 0 chr6 119918833 119918937 -62496305 + AluSg/x SINE Alu 198 306 -4 21 82 0 0 chr6 119919043 119919092 -62496150 + AT_rich Low_complexity Low_complexity 1 49 0 1513 149 9 102 chr6 119919399 119919714 -62495528 + AluY SINE Alu 1 286 -25 1168 162 39 1 chr6 119919779 119919801 -62495441 - L1MA4 LINE L1 -33 6279 6259 1751 131 0 0 chr6 119919801 119920046 -62495196 - AluJb SINE Alu -67 245 1 1168 162 39 1 chr6 119920046 119920253 -62494989 - L1MA4 LINE L1 -53 6259 6035 2223 120 0 0 chr6 119920253 119920552 -62494690 - AluSq SINE Alu -11 302 4 1887 111 0 0 chr6 119920585 119920828 -62494414 - AluSq SINE Alu -24 289 47 1499 184 35 14 chr6 119920906 119921188 -62494054 - AluJo SINE Alu -24 288 1 1194 169 70 48 chr6 119921188 119921461 -62493781 - L1 LINE L1 -3353 3029 2751 1673 197 24 3 chr6 119921468 119921763 -62493479 - AluJb SINE Alu -11 301 1 869 132 0 0 chr6 119921763 119921884 -62493358 - AluJo SINE Alu -176 136 16 1684 196 46 25 chr6 119921888 119922569 -62492673 - L1 LINE L1 -3637 2745 1657 1562 196 59 0 chr6 119922676 119922946 -62492296 - AluJo SINE Alu -12 290 5 2293 114 0 0 chr6 119923153 119923451 -62491791 - AluSg SINE Alu -12 298 1 3172 156 26 9 chr6 119923501 119924079 -62491163 - L1MB3 LINE L1 -4 6179 5592 375 310 62 0 chr6 119925224 119925337 -62489905 - L2 LINE L2 -1 3312 3193 2389 106 60 23 chr6 119926186 119926535 -62488707 + THE1B LTR MaLR 1 362 -2 652 151 91 134 chr6 119926697 119926883 -62488359 - MER5B DNA MER1_type 0 178 1 2285 88 44 0 chr6 119926997 119927291 -62487951 - AluY SINE Alu -4 307 1 779 197 113 0 chr6 119927537 119927679 -62487563 + FRAM SINE Alu 1 158 -8 5626 142 15 22 chr6 119927789 119928801 -62486441 - L1MA4 LINE L1 -4 6296 5278 2160 115 0 3 chr6 119928801 119929097 -62486145 + AluSq SINE Alu 1 295 -18 5626 142 15 22 chr6 119929097 119929221 -62486021 - L1MA4 LINE L1 -1022 5278 5155 2227 117 7 0 chr6 119929221 119929529 -62485713 - AluSx SINE Alu -2 310 1 5626 142 15 22 chr6 119929529 119929995 -62485247 - L1MA4 LINE L1 -1145 5155 4775 1051 103 14 7 chr6 119930559 119930704 -62484538 - THE1B LTR MaLR -218 146 1 9252 89 7 1 chr6 119930704 119931914 -62483328 - THE1B-int LTR MaLR 0 1580 364 4231 48 21 0 chr6 119931914 119932394 -62482848 - LTR2B LTR ERV1 0 490 1 25149 111 11 3 chr6 119932394 119935320 -62479922 - Harlequin LTR ERV1 0 6896 3937 180 0 0 0 chr6 119935320 119935340 -62479902 + (TTA)n Simple_repeat Simple_repeat 2 21 0 25149 111 11 3 chr6 119935340 119935931 -62479311 - Harlequin LTR ERV1 -2959 3937 3352 5551 50 111 70 chr6 119935930 119936894 -62478348 - Harlequin LTR ERV1 -4322 2574 1572 * 5062 54 10 3 chr6 119936887 119937515 -62477727 - Harlequin LTR ERV1 -6003 893 262 * 2694 101 5 0 chr6 119937510 119937888 -62477354 - Harlequin LTR ERV1 -6516 380 1 * 4119 45 29 19 chr6 119937888 119938373 -62476869 - LTR2B LTR ERV1 0 490 1 2287 90 76 6 chr6 119938373 119938716 -62476526 - THE1B-int LTR MaLR -1213 367 1 2340 107 38 41 chr6 119938716 119939081 -62476161 - THE1B LTR MaLR 0 364 1 387 308 86 0 chr6 119939758 119939875 -62475367 + MIR SINE MIR 12 138 -124 2687 125 5 10 chr6 119939935 119940327 -62474915 + MLT1B LTR MaLR 1 390 0 2313 99 0 7 chr6 119940372 119940675 -62474567 + AluSx SINE Alu 1 301 -11 2201 90 37 3 chr6 119940675 119940975 -62474267 + AluY SINE Alu 1 310 -1 576 123 94 0 chr6 119941570 119941676 -62473566 - L1MA8 LINE L1 -2 6289 6174 2243 108 0 0 chr6 119941736 119942031 -62473211 + AluSq SINE Alu 1 295 -18 297 329 24 0 chr6 119942145 119942230 -62473012 - L2 LINE L2 -42 3230 3144 381 230 54 47 chr6 119942337 119942485 -62472757 - HAL1 LINE L1 -1913 594 446 1024 174 0 6 chr6 119942653 119942831 -62472411 - AluYa8 SINE Alu -9 301 125 1392 106 0 5 chr6 119942832 119943021 -62472221 - AluSg/x SINE Alu -1 309 122 2408 71 10 10 chr6 119943021 119943332 -62471910 - AluY SINE Alu 0 311 1 264 283 177 9 chr6 119943428 119943541 -62471701 + L2 LINE L2 3134 3265 -7 2029 130 7 0 chr6 119944187 119944480 -62470762 + AluSx SINE Alu 1 295 -17 1673 159 21 14 chr6 119944792 119945081 -62470161 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr6 119946479 119946500 -62468742 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 119946774 119946807 -62468435 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr6 119947031 119947053 -62468189 + AT_rich Low_complexity Low_complexity 1 22 0 5154 130 52 17 chr6 119948308 119949249 -62465993 + MER11B LTR ERVK 30 1169 -97 439 250 142 20 chr6 119949298 119949446 -62465796 + MER5B DNA MER1_type 1 166 -12 2151 98 18 3 chr6 119950366 119950652 -62464590 + AluSx SINE Alu 1 290 -22 1188 126 0 37 chr6 119950896 119951086 -62464156 - AluSg/x SINE Alu 0 312 130 2144 134 0 6 chr6 119951096 119951410 -62463832 - AluSx SINE Alu 0 312 1 2180 122 6 6 chr6 119951451 119951763 -62463479 - AluSx SINE Alu 0 312 1 1894 156 60 17 chr6 119952352 119952672 -62462570 - L1PA16 LINE L1 0 6166 5828 2402 89 3 3 chr6 119952672 119952985 -62462257 - AluSp SINE Alu 0 313 1 1894 156 60 17 chr6 119952985 119953011 -62462231 - L1PA16 LINE L1 -338 5828 5805 1596 206 17 0 chr6 119953053 119953376 -62461866 + AluJo SINE Alu 1 312 0 367 321 151 48 chr6 119953751 119954168 -62461074 - L2 LINE L2 -1 3271 2812 351 149 108 0 chr6 119954331 119954405 -62460837 + MIR SINE MIR 58 139 -123 187 211 26 0 chr6 119954406 119954444 -62460798 + L2 LINE L2 3252 3290 -23 1543 153 4 4 chr6 119954597 119954832 -62460410 - MER46A DNA MER2_type -1 235 1 22 35 0 0 chr6 119954900 119954929 -62460313 + AT_rich Low_complexity Low_complexity 1 29 0 228 67 0 0 chr6 119955399 119955429 -62459813 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 499 202 119 28 chr6 119955429 119955527 -62459715 - L2 LINE L2 -13 3300 3190 3986 27 25 0 chr6 119955540 119955986 -62459256 - L1PA6 LINE L1 0 6154 5698 1615 106 9 0 chr6 119956107 119956334 -62458908 - MER47A DNA MER2_type -130 236 8 4420 131 54 64 chr6 119956674 119957467 -62457775 - LTR1 LTR ERV1 0 785 1 1647 144 57 4 chr6 119958124 119958388 -62456854 + AluJb SINE Alu 5 282 -30 21 0 0 0 chr6 119959139 119959160 -62456082 + AT_rich Low_complexity Low_complexity 1 21 0 2458 54 10 0 chr6 119959553 119959847 -62455395 - AluY SINE Alu -14 297 1 2030 131 10 0 chr6 119960304 119960601 -62454641 - AluSx SINE Alu -12 300 1 930 158 0 0 chr6 119960785 119960924 -62454318 + AluJb SINE Alu 162 300 -12 1312 236 128 34 chr6 119961969 119962515 -62452727 + MLT1G3 LTR MaLR 1 530 0 1807 170 7 0 chr6 119962593 119962881 -62452361 - AluJo SINE Alu -10 302 13 1530 100 52 9 chr6 119963489 119963699 -62451543 + MER1B DNA MER1_type 121 339 0 1936 132 50 0 chr6 119963703 119963984 -62451258 + AluSx SINE Alu 3 297 -15 2359 101 0 7 chr6 119964125 119964432 -62450810 + AluSx SINE Alu 1 305 -7 561 138 11 23 chr6 119965234 119965321 -62449921 - AluJb SINE Alu -18 294 209 1298 209 19 39 chr6 119965378 119965427 -62449815 - L1ME1 LINE L1 -200 5966 5918 708 214 15 0 chr6 119965427 119965558 -62449684 + FLAM_A SINE Alu 1 133 0 1298 209 19 39 chr6 119965558 119965819 -62449423 - L1ME1 LINE L1 -248 5918 5662 1953 67 0 0 chr6 119965819 119966057 -62449185 - AluY SINE Alu 0 311 74 759 66 189 0 chr6 119966064 119966170 -62449072 - AluY SINE Alu -184 127 2 425 240 10 0 chr6 119966173 119966273 -62448969 - L1ME1 LINE L1 -503 5663 5563 2325 56 52 0 chr6 119966313 119966600 -62448642 - AluSp SINE Alu -11 302 1 561 213 0 90 chr6 119966634 119966822 -62448420 + L1ME2 LINE L1 5919 6089 -75 2288 93 0 17 chr6 119966924 119967226 -62448016 + AluSg SINE Alu 1 297 -13 941 118 65 12 chr6 119967236 119967406 -62447836 + L1MA3 LINE L1 5981 6159 -146 472 310 0 0 chr6 119967447 119967563 -62447679 - MIR SINE MIR -61 147 32 1321 110 0 6 chr6 119967573 119967818 -62447424 - AluSq SINE Alu -13 300 2 2301 79 10 0 chr6 119967819 119968109 -62447133 - AluSp SINE Alu -20 293 1 270 146 0 0 chr6 119968155 119968196 -62447046 - MER106A DNA MER1_type 0 236 196 323 247 41 31 chr6 119968232 119968329 -62446913 - MER106B DNA MER1_type -913 146 49 1858 168 0 10 chr6 119968397 119968694 -62446548 - AluJo SINE Alu -18 294 1 182 365 27 14 chr6 119968803 119968877 -62446365 + MIR SINE MIR 19 93 -115 300 190 17 0 chr6 119968957 119969015 -62446227 + MIR3 SINE MIR 149 207 -1 2290 96 10 3 chr6 119970738 119971031 -62444211 - AluSg SINE Alu -15 295 1 1976 139 7 0 chr6 119971722 119972041 -62443201 - AluSx SINE Alu 0 321 1 2491 68 0 0 chr6 119972610 119972904 -62442338 - AluY SINE Alu -17 294 1 2346 145 58 23 chr6 119973381 119973863 -62441379 - L1MA3 LINE L1 -1 6304 5806 3100 129 53 15 chr6 119973867 119974536 -62440706 + L1MA3 LINE L1 5132 5825 -480 1732 151 47 0 chr6 119975034 119975313 -62439929 + AluJb SINE Alu 7 298 -14 692 191 46 8 chr6 119976014 119976145 -62439097 - AluJo SINE Alu -176 136 1 1881 154 0 4 chr6 119976519 119976799 -62438443 - AluJb SINE Alu -22 290 12 2042 118 3 0 chr6 119976799 119977086 -62438156 - AluSx SINE Alu -24 288 1 571 158 29 72 chr6 119977086 119977225 -62438017 - FLAM_A SINE Alu -5 137 5 21 0 0 0 chr6 119979806 119979827 -62435415 + AT_rich Low_complexity Low_complexity 1 21 0 2370 70 0 0 chr6 119979827 119980114 -62435128 - AluY SINE Alu -24 287 1 22 35 0 0 chr6 119980128 119980157 -62435085 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr6 119980423 119980478 -62434764 + AT_rich Low_complexity Low_complexity 1 55 0 2307 94 0 3 chr6 119981221 119981519 -62433723 - AluSq SINE Alu -16 297 1 2130 135 3 0 chr6 119981670 119981981 -62433261 - AluSx SINE Alu 0 312 1 24 0 0 0 chr6 119982217 119982241 -62433001 + AT_rich Low_complexity Low_complexity 1 24 0 271 339 32 40 chr6 119982581 119982705 -62432537 + L2 LINE L2 3190 3312 -1 241 275 43 14 chr6 119982710 119982779 -62432463 + L3 LINE CR1 437 507 -1070 24 0 0 0 chr6 119982847 119982871 -62432371 + AT_rich Low_complexity Low_complexity 1 24 0 2180 204 32 13 chr6 119984250 119984715 -62430527 + L1ME1 LINE L1 5479 5952 -226 240 267 0 0 chr6 119984761 119984821 -62430421 + L1ME1 LINE L1 5941 6000 -166 717 234 15 25 chr6 119984834 119985031 -62430211 + L1MB8 LINE L1 5982 6176 -2 282 319 0 0 chr6 119985203 119985297 -62429945 - L1ME LINE L1 -391 5730 5637 324 308 90 13 chr6 119985326 119985482 -62429760 - L1ME LINE L1 -545 5576 5409 360 0 0 0 chr6 119986056 119986096 -62429146 + (T)n Simple_repeat Simple_repeat 1 40 0 492 301 15 8 chr6 119986634 119986767 -62428475 + MIR SINE MIR 10 143 -119 390 289 139 22 chr6 119986924 119987104 -62428138 - MIR SINE MIR -5 257 57 2106 97 3 39 chr6 119988783 119989091 -62426151 - AluSx SINE Alu -15 297 1 317 364 41 62 chr6 119989343 119989684 -62425558 + L1MEc LINE L1 235 568 -5828 301 299 46 37 chr6 119989974 119990130 -62425112 + L1MDa LINE L1 655 808 -5615 2445 60 0 0 chr6 119990130 119990428 -62424814 + AluY SINE Alu 1 298 -13 301 299 46 37 chr6 119990428 119990530 -62424712 + L1MDa LINE L1 808 972 -5451 585 225 136 9 chr6 119990547 119990764 -62424478 + L1MDa LINE L1 2175 2461 -841 * 1577 198 94 84 chr6 119990761 119991285 -62423957 + L1ME2 LINE L1 5571 6113 -71 2265 94 0 0 chr6 119991285 119991573 -62423669 - AluSx SINE Alu -24 288 1 1577 198 94 84 chr6 119991573 119991642 -62423600 + L1ME2 LINE L1 6113 6180 -4 239 321 0 12 chr6 119993094 119993178 -62422064 + HAL1b LINE L1 402 484 -864 1713 216 233 44 chr6 119993239 119993962 -62421280 + L2 LINE L2 724 3312 -1 187 338 14 0 chr6 119994064 119994135 -62421107 - L2 LINE L2 0 3313 3242 605 240 93 13 chr6 119994240 119994390 -62420852 - FAM SINE Alu -12 163 2 1928 141 7 0 chr6 119994732 119995036 -62420206 + AluSx SINE Alu 1 306 -6 521 201 10 136 chr6 119995424 119995623 -62419619 - FAM SINE Alu -3 46 1 1111 163 9 50 chr6 119995624 119995845 -62419397 - AluJb SINE Alu -100 212 1 710 149 0 64 chr6 119995854 119995995 -62419247 - FLAM_C SINE Alu 0 133 2 1800 148 3 17 chr6 119996407 119996697 -62418545 - AluJb SINE Alu -26 286 1 773 145 8 0 chr6 119997333 119997457 -62417785 - FAM SINE Alu -43 142 18 299 298 82 61 chr6 119997784 119998029 -62417213 - MIR SINE MIR 0 262 13 356 179 63 32 chr6 119998116 119998211 -62417031 - MIR SINE MIR -74 188 91 1652 172 7 40 chr6 119998331 119998627 -62416615 - AluJo SINE Alu -23 289 4 345 277 149 28 chr6 119999014 119999263 -62415979 + L1ME4a LINE L1 5773 6051 -70 2000 130 0 3 chr6 119999740 120000032 -62415210 - AluSx SINE Alu -2 310 20 23 33 0 0 chr6 120002943 120002973 -62412269 + AT_rich Low_complexity Low_complexity 1 30 0 297 184 44 30 chr6 120003002 120003116 -62412126 - MIR SINE MIR -10 252 90 36 23 0 0 chr6 120004106 120004149 -62411093 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr6 120004890 120004919 -62410323 + AT_rich Low_complexity Low_complexity 1 29 0 2434 64 0 3 chr6 120005154 120005452 -62409790 + AluY SINE Alu 1 297 -14 300 200 12 82 chr6 120005593 120005678 -62409564 + MER63 DNA MER1_type 676 754 -306 358 256 26 0 chr6 120005678 120005756 -62409486 + MER63 DNA MER1_type 981 1060 0 27 73 0 0 chr6 120006116 120006171 -62409071 + AT_rich Low_complexity Low_complexity 1 55 0 921 173 6 25 chr6 120006211 120006373 -62408869 - FAM SINE Alu -16 159 1 204 40 0 0 chr6 120007264 120007289 -62407953 + (A)n Simple_repeat Simple_repeat 1 25 0 709 245 68 76 chr6 120007630 120007994 -62407248 + L1MC4a LINE L1 5534 5811 -355 1854 173 0 3 chr6 120008214 120008520 -62406722 - AluJo SINE Alu -7 305 1 21 36 0 0 chr6 120008631 120008659 -62406583 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 120008746 120008776 -62406466 + AT_rich Low_complexity Low_complexity 1 30 0 2302 111 0 0 chr6 120008845 120009152 -62406090 + AluSx SINE Alu 1 307 -5 198 71 0 0 chr6 120009163 120009191 -62406051 + (A)n Simple_repeat Simple_repeat 1 28 0 22 56 0 0 chr6 120009810 120009846 -62405396 + AT_rich Low_complexity Low_complexity 1 36 0 1406 181 68 3 chr6 120010231 120010568 -62404674 - Charlie5 DNA MER1_type 0 2623 2265 597 155 69 0 chr6 120010580 120010696 -62404546 - Charlie5 DNA MER1_type -2488 124 1 1545 137 0 54 chr6 120011039 120011316 -62403926 - AluJo SINE Alu -13 299 38 21 0 0 0 chr6 120012369 120012390 -62402852 + AT_rich Low_complexity Low_complexity 1 21 0 214 347 132 52 chr6 120013379 120013592 -62401650 - L2 LINE L2 -73 3199 2970 1501 285 87 81 chr6 120013610 120014621 -62400621 - L2 LINE L2 -658 2656 1640 222 309 60 0 chr6 120016458 120016542 -62398700 - L3 LINE CR1 -208 1369 1281 1051 60 0 0 chr6 120016916 120017049 -62398193 + AluY SINE Alu 173 305 -6 526 251 181 55 chr6 120017049 120017580 -62397662 + L1ME4a LINE L1 5497 6094 -27 2204 81 21 0 chr6 120017589 120017874 -62397368 - AluSc SINE Alu -18 291 1 22 56 0 0 chr6 120017890 120017926 -62397316 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 120018236 120018257 -62396985 + AT_rich Low_complexity Low_complexity 1 21 0 353 211 108 5 chr6 120018257 120018363 -62396879 - L1MA9 LINE L1 -25 6274 6155 1505 139 28 8 chr6 120018443 120018694 -62396548 - L1MC1 LINE L1 0 6333 6078 1772 170 10 0 chr6 120019142 120019302 -62395940 - AluJo SINE Alu -20 292 126 2298 95 0 10 chr6 120019302 120019607 -62395635 - AluSq SINE Alu -11 302 1 1772 170 10 0 chr6 120019607 120019735 -62395507 - AluJo SINE Alu -186 126 1 1757 186 3 3 chr6 120025074 120025380 -62389862 - AluJo SINE Alu -6 306 1 24 32 0 0 chr6 120026163 120026194 -62389048 + AT_rich Low_complexity Low_complexity 1 31 0 947 316 136 10 chr6 120026256 120026765 -62388477 - L3 LINE CR1 -19 1558 986 2366 66 0 20 chr6 120027998 120028302 -62386940 - AluY SINE Alu -13 298 1 187 252 46 92 chr6 120028423 120028554 -62386688 + MER5A DNA MER1_type 10 134 -55 5294 161 24 43 chr6 120029902 120030918 -62384324 + L1MA3 LINE L1 31 1026 -6539 7348 121 34 11 chr6 120030918 120033146 -62382096 + L1MA3 LINE L1 5459 7724 0 464 216 110 84 chr6 120033167 120033649 -62381593 + L1ME LINE L1 4987 5452 -712 2121 207 91 89 chr6 120034086 120034461 -62380781 + L1MB5 LINE L1 5387 5760 -414 2289 105 0 0 chr6 120034461 120034765 -62380477 - AluSx SINE Alu -8 304 1 2121 207 91 89 chr6 120034765 120035166 -62380076 + L1MB5 LINE L1 5760 6165 -9 2297 86 13 10 chr6 120037471 120037774 -62377468 - AluSc SINE Alu -2 307 4 25 51 0 0 chr6 120037780 120037819 -62377423 + AT_rich Low_complexity Low_complexity 1 39 0 2132 123 0 3 chr6 120038810 120039110 -62376132 - AluSx SINE Alu -13 299 1 561 180 0 20 chr6 120039435 120039535 -62375707 + AluJo SINE Alu 81 178 -134 911 252 0 5 chr6 120039535 120039745 -62375497 + AluJb SINE Alu 87 295 -17 2095 115 0 0 chr6 120140018 120140296 -62274946 + AluY SINE Alu 1 278 -33 2153 120 10 75 chr6 120141239 120141536 -62273706 + MLT1A1 LTR MaLR 7 322 -43 568 250 8 0 chr6 120141536 120141664 -62273578 + FLAM_A SINE Alu 1 129 -4 2416 102 0 6 chr6 120141666 120141980 -62273262 + AluSx SINE Alu 1 312 0 2153 120 10 75 chr6 120141980 120142063 -62273179 + MLT1A1 LTR MaLR 323 365 0 211 341 12 0 chr6 120142063 120142145 -62273097 - MER5A DNA MER1_type -46 143 61 558 188 30 0 chr6 120142158 120142259 -62272983 - U13 snRNA snRNA 0 104 1 2164 89 41 17 chr6 120142288 120142579 -62272663 + AluSx SINE Alu 1 298 -14 1189 176 115 25 chr6 120144663 120144744 -62270498 + AluJo SINE Alu 23 95 -217 351 0 0 0 chr6 120144744 120144783 -62270459 + (CA)n Simple_repeat Simple_repeat 2 40 0 1189 176 115 25 chr6 120144783 120144945 -62270297 + AluJo SINE Alu 95 288 -24 2413 79 0 16 chr6 120144957 120145273 -62269969 + AluSq SINE Alu 3 313 0 320 204 8 57 chr6 120145290 120145372 -62269870 - MIR SINE MIR -94 114 32 407 298 25 0 chr6 120145526 120145647 -62269595 + MIR SINE MIR 106 229 -33 2105 132 9 40 chr6 120145658 120146006 -62269236 - MER1B DNA MER1_type 0 337 1 1111 217 14 0 chr6 120146089 120146310 -62268932 - MER58A DNA MER1_type 0 224 1 450 248 9 0 chr6 120146330 120146435 -62268807 + L2 LINE L2 3206 3311 -2 244 218 23 46 chr6 120146508 120146595 -62268647 - LTR50 LTR ERVL -2 793 709 625 279 32 0 chr6 120147134 120147292 -62267950 - MLT1G1 LTR MaLR -2 593 431 1017 263 37 28 chr6 120147294 120147621 -62267621 + MLT1G1 LTR MaLR 259 588 -7 884 225 16 0 chr6 120148061 120148243 -62266999 + MER91B DNA MER1_type 1 185 -5 21 0 0 0 chr6 120148505 120148526 -62266716 + AT_rich Low_complexity Low_complexity 1 21 0 1625 183 0 24 chr6 120148526 120148821 -62266421 - AluJo SINE Alu -17 295 8 459 0 0 0 chr6 120150049 120150100 -62265142 + (CA)n Simple_repeat Simple_repeat 2 52 0 208 91 45 0 chr6 120150658 120150702 -62264540 + GA-rich Low_complexity Low_complexity 1 46 0 242 306 31 31 chr6 120150863 120150961 -62264281 + L2 LINE L2 2987 3084 -188 181 293 123 28 chr6 120151320 120151426 -62263816 + L2 LINE L2 1323 1438 -1876 1052 196 0 44 chr6 120151700 120151904 -62263338 + AluJo SINE Alu 86 280 -32 777 176 0 0 chr6 120151937 120152056 -62263186 + FLAM_A SINE Alu 1 119 -14 284 333 49 0 chr6 120152404 120152506 -62262736 - L2 LINE L2 -27 3245 3139 22 0 0 0 chr6 120152910 120152932 -62262310 + AT_rich Low_complexity Low_complexity 1 22 0 2474 91 0 0 chr6 120153800 120154107 -62261135 - AluSc SINE Alu -2 307 1 760 129 8 34 chr6 120154135 120154394 -62260848 + AluJ SINE Alu 6 298 -14 22 35 0 0 chr6 120154888 120154917 -62260325 + AT_rich Low_complexity Low_complexity 1 29 0 2139 101 14 0 chr6 120155109 120155386 -62259856 + AluSg SINE Alu 1 281 -29 189 0 0 0 chr6 120155390 120155411 -62259831 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 240 310 82 49 chr6 120155581 120155765 -62259477 - MIR3 SINE MIR -2 206 17 26 30 0 0 chr6 120157052 120157085 -62258157 + AT_rich Low_complexity Low_complexity 1 33 0 886 197 70 12 chr6 120157924 120158168 -62257074 + L1ME1 LINE L1 5796 6053 -113 608 125 214 9 chr6 120158178 120158290 -62256952 - MER58C DNA MER1_type -3 212 78 429 225 54 0 chr6 120158323 120158434 -62256808 + L1ME1 LINE L1 6046 6162 -4 354 183 33 131 chr6 120159753 120159906 -62255336 + MER46C DNA MER2_type 2 139 -199 1881 170 43 0 chr6 120160922 120161246 -62253996 + MER58B DNA MER1_type 1 338 -3 1626 167 7 7 chr6 120161513 120161795 -62253447 + MLT1B LTR MaLR 1 282 -108 337 143 36 0 chr6 120161903 120161959 -62253283 + Alu SINE Alu 234 291 -11 220 307 13 0 chr6 120163059 120163134 -62252108 - L2 LINE L2 0 3313 3238 251 270 112 0 chr6 120163738 120163827 -62251415 - L2 LINE L2 -31 3241 3143 257 307 59 0 chr6 120164081 120164182 -62251060 - L2 LINE L2 -600 2714 2608 183 42 0 0 chr6 120164513 120164537 -62250705 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1041 156 28 6 chr6 120164629 120164809 -62250433 + MER5A DNA MER1_type 3 186 -3 381 202 79 0 chr6 120165243 120165332 -62249910 - MLT1H LTR MaLR 0 549 454 2012 81 103 0 chr6 120165487 120165758 -62249484 + AluSx SINE Alu 1 299 -13 706 239 30 6 chr6 120165785 120165952 -62249290 - MLT1H LTR MaLR -354 195 25 1732 153 32 14 chr6 120165971 120166252 -62248990 + AluJo SINE Alu 1 286 -26 361 151 54 54 chr6 120166420 120166513 -62248729 + MER53 DNA DNA 9 101 -88 * 479 72 60 24 chr6 120166433 120166516 -62248726 - MER53 DNA DNA -11 178 93 390 112 67 22 chr6 120166567 120166656 -62248586 + MER53 DNA DNA 97 189 0 579 252 82 68 chr6 120167142 120167270 -62247972 + MIR SINE MIR 18 152 -110 2337 100 0 0 chr6 120167270 120167571 -62247671 + AluSx SINE Alu 1 301 -11 579 252 82 68 chr6 120167571 120167648 -62247594 + MIR SINE MIR 152 226 -36 1021 74 0 0 chr6 120169261 120169383 -62245859 + AluY SINE Alu 11 132 -179 2442 90 0 0 chr6 120169384 120169683 -62245559 + AluSx SINE Alu 1 299 -13 15376 118 17 18 chr6 120170109 120172453 -62242789 - L1P LINE L1 -3794 2352 11 2297 93 3 0 chr6 120172725 120173016 -62242226 + AluSp SINE Alu 1 292 -21 1757 156 22 59 chr6 120173016 120173337 -62241905 - AluJo SINE Alu -3 309 1 216 265 181 0 chr6 120174317 120174400 -62240842 + MIR3 SINE MIR 87 184 -24 379 240 92 112 chr6 120174710 120174906 -62240336 - MIR SINE MIR -21 241 50 646 140 104 150 chr6 120175569 120175640 -62239602 + MER5A DNA MER1_type 6 79 -110 2430 67 0 0 chr6 120175640 120175924 -62239318 + AluY SINE Alu 1 284 -27 646 140 104 150 chr6 120175924 120176045 -62239197 + MER5A DNA MER1_type 79 189 0 1833 205 41 48 chr6 120176519 120176804 -62238438 + L1ME1 LINE L1 5665 5947 -219 2301 103 0 7 chr6 120176804 120177105 -62238137 + AluSx SINE Alu 1 299 -13 1833 205 41 48 chr6 120177105 120177302 -62237940 + L1ME1 LINE L1 5947 6144 -22 305 215 41 111 chr6 120177176 120177348 -62237894 + L1MA10 LINE L1 6173 6332 -2 * 514 203 39 39 chr6 120177674 120177748 -62237494 + L1ME4a LINE L1 5969 6042 -79 1951 133 23 10 chr6 120177748 120178056 -62237186 - AluJb SINE Alu 0 312 1 514 203 39 39 chr6 120178056 120178134 -62237108 + L1ME4a LINE L1 6041 6121 0 378 229 336 0 chr6 120178286 120178417 -62236825 - MER5A DNA MER1_type -1 188 14 1073 144 108 35 chr6 120178424 120178703 -62236539 + MER33 DNA MER1_type 1 288 -36 291 133 0 157 chr6 120178746 120178829 -62236413 + MER33 DNA MER1_type 294 363 0 286 211 14 14 chr6 120179005 120179076 -62236166 - MIR3 SINE MIR -5 203 133 1811 134 48 4 chr6 120179282 120179571 -62235671 - AluSx SINE Alu 0 301 1 2221 73 0 0 chr6 120179607 120179882 -62235360 + AluY SINE Alu 31 305 -6 22 35 0 0 chr6 120180425 120180454 -62234788 + AT_rich Low_complexity Low_complexity 1 29 0 2111 119 26 0 chr6 120180537 120180840 -62234402 - AluSx SINE Alu -1 311 1 261 0 0 0 chr6 120181360 120181389 -62233853 + (CA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr6 120181596 120181620 -62233622 + (CA)n Simple_repeat Simple_repeat 2 25 0 1123 235 92 25 chr6 120182442 120182800 -62232442 + L2 LINE L2 1280 1661 -1653 916 267 85 55 chr6 120182802 120183523 -62231719 + L2 LINE L2 2574 3313 0 207 0 0 0 chr6 120183608 120183631 -62231611 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1741 159 36 4 chr6 120183633 120183910 -62231332 - AluSx SINE Alu -26 286 1 4294 134 55 31 chr6 120184012 120184065 -62231177 + Tigger2 DNA MER2_type 1 51 -2667 1847 138 0 26 chr6 120184065 120184369 -62230873 - AluJo SINE Alu -16 296 1 4294 134 55 31 chr6 120184369 120185077 -62230165 + Tigger2 DNA MER2_type 51 780 -1938 967 161 133 116 chr6 120185077 120185362 -62229880 + AluJo SINE Alu 6 295 -17 427 203 0 0 chr6 120185362 120185431 -62229811 + Tigger2 DNA MER2_type 788 856 -1862 * 977 170 0 29 chr6 120185424 120185595 -62229647 + Tigger2 DNA MER2_type 2553 2718 0 947 190 71 41 chr6 120185752 120186021 -62229221 - L1MEc LINE L1 -3135 3080 2804 351 141 56 28 chr6 120186025 120186096 -62229146 + L1M4 LINE L1 2655 2727 -3419 516 256 128 20 chr6 120186102 120186407 -62228835 - L1MEc LINE L1 -5413 983 646 454 275 0 0 chr6 120186459 120186568 -62228674 - MER58 DNA MER1_type -92 123 15 2130 239 56 16 chr6 120186643 120187141 -62228101 - LTR40a LTR ERVL -1 518 1 596 333 96 23 chr6 120187237 120187664 -62227578 - L1MEc LINE L1 -5884 512 55 243 0 0 0 chr6 120187673 120187700 -62227542 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2087 98 7 0 chr6 120187703 120187979 -62227263 - AluSc SINE Alu -31 278 1 501 231 39 0 chr6 120188367 120188471 -62226771 + MER81 DNA DNA 4 111 -3 2229 69 41 3 chr6 120190275 120190565 -62224677 + AluY SINE Alu 1 301 -10 425 298 21 35 chr6 120190703 120190844 -62224398 + MIR3 SINE MIR 3 141 -67 246 247 273 27 chr6 120190946 120191096 -62224146 - MIR SINE MIR -13 249 63 2423 80 3 10 chr6 120191205 120191518 -62223724 + AluY SINE Alu 1 311 0 2183 175 5 23 chr6 120191589 120191744 -62223498 - MLT1B LTR MaLR -8 382 226 1947 193 25 3 chr6 120191744 120192101 -62223141 + MLT1A1 LTR MaLR 1 365 0 2183 175 5 23 chr6 120192101 120192334 -62222908 - MLT1B LTR MaLR -164 226 1 626 251 193 14 chr6 120192381 120192588 -62222654 - MIR SINE MIR -17 245 2 369 111 0 0 chr6 120192749 120192803 -62222439 - MADE1 DNA Mariner -26 54 1 2150 145 0 3 chr6 120194174 120194485 -62220757 + AluSx SINE Alu 1 310 -2 204 288 0 45 chr6 120194634 120194700 -62220542 + MIR SINE MIR 81 143 -119 612 257 115 59 chr6 120197075 120197253 -62217989 - L3 LINE CR1 -1 1576 1409 1749 135 3 92 chr6 120197253 120197578 -62217664 - AluJb SINE Alu -16 296 1 612 257 115 59 chr6 120197578 120197722 -62217520 - L3 LINE CR1 -168 1409 1236 329 295 179 73 chr6 120198188 120198490 -62216752 + L2 LINE L2 2938 3271 -1 216 219 78 16 chr6 120198519 120198583 -62216659 + MIR3 SINE MIR 137 204 -4 329 333 12 16 chr6 120198696 120198871 -62216371 - MIR SINE MIR -3 205 29 2394 87 0 0 chr6 120199574 120199883 -62215359 - AluY SINE Alu -2 309 1 232 313 20 40 chr6 120200034 120200133 -62215109 + MIR SINE MIR 11 107 -155 536 253 40 27 chr6 120200158 120200308 -62214934 + MER5B DNA MER1_type 4 155 -23 344 218 113 60 chr6 120200375 120200430 -62214812 + MIR SINE MIR 106 157 -105 2160 94 3 23 chr6 120200430 120200737 -62214505 + AluY SINE Alu 1 301 -10 344 218 113 60 chr6 120200737 120200814 -62214428 + MIR SINE MIR 157 245 -17 1809 136 70 0 chr6 120201045 120201317 -62213925 - AluJb SINE Alu -21 291 1 351 294 178 20 chr6 120201429 120201575 -62213667 + MIR3 SINE MIR 30 198 -10 546 252 43 51 chr6 120201603 120201837 -62213405 - L2 LINE L2 -396 2918 2687 * 819 251 77 0 chr6 120201807 120202014 -62213228 - MIR SINE MIR -4 258 36 2382 78 7 0 chr6 120203205 120203500 -62211742 + AluSp SINE Alu 1 297 -16 1194 85 13 0 chr6 120203500 120203653 -62211589 + AluSc SINE Alu 132 286 -23 227 358 52 59 chr6 120204651 120204922 -62210320 + L2 LINE L2 2996 3264 -8 553 207 53 53 chr6 120206371 120206521 -62208721 - L2 LINE L2 0 3313 3164 1660 233 41 18 chr6 120206533 120206920 -62208322 - MLT1I LTR MaLR 0 409 14 1036 227 197 30 chr6 120206926 120207524 -62207718 - L2 LINE L2 -170 3143 2446 311 250 12 36 chr6 120208249 120208333 -62206909 - L2 LINE L2 0 3313 3232 253 252 76 17 chr6 120208333 120208452 -62206790 - L1ME4a LINE L1 -10 6111 5986 22 56 0 0 chr6 120208524 120208560 -62206682 + AT_rich Low_complexity Low_complexity 1 36 0 581 230 46 7 chr6 120208775 120208927 -62206315 - L1ME4a LINE L1 0 6121 5964 718 243 20 0 chr6 120208955 120209107 -62206135 + MIR SINE MIR 92 246 -16 266 176 0 0 chr6 120209310 120209361 -62205881 - L1MC4 LINE L1 -5 8037 7987 1646 233 78 7 chr6 120209364 120209810 -62205432 - L1MC4 LINE L1 -140 7902 7425 819 156 22 7 chr6 120210122 120210257 -62204985 + FLAM_C SINE Alu 5 141 -2 1741 163 7 26 chr6 120210261 120210373 -62204869 + AluJb SINE Alu 1 114 -198 2438 121 135 5 chr6 120210373 120210752 -62204490 + MSTA LTR MaLR 1 428 0 1741 163 7 26 chr6 120210752 120210946 -62204296 + AluJb SINE Alu 114 301 -11 2235 109 0 0 chr6 120211746 120212039 -62203203 + AluSq SINE Alu 1 293 -20 27 49 0 0 chr6 120212039 120212080 -62203162 + AT_rich Low_complexity Low_complexity 1 41 0 539 121 21 106 chr6 120212431 120212572 -62202670 - L1MB2 LINE L1 0 6171 6043 485 329 67 9 chr6 120213418 120213628 -62201614 - MIR SINE MIR -10 252 31 247 349 101 60 chr6 120214330 120214479 -62200763 + L2 LINE L2 3104 3258 -14 1971 113 16 39 chr6 120217994 120218303 -62196939 + AluSx SINE Alu 1 302 -10 1675 162 3 57 chr6 120218398 120218532 -62196710 + AluJb SINE Alu 1 141 -171 1919 123 49 11 chr6 120218532 120218816 -62196426 - AluSx SINE Alu -17 295 1 1675 162 3 57 chr6 120218816 120218996 -62196246 + AluJb SINE Alu 141 298 -14 403 309 141 7 chr6 120219337 120219486 -62195756 + MIR3 SINE MIR 29 197 -11 2466 73 0 0 chr6 120220418 120220718 -62194524 + AluY SINE Alu 1 300 -11 336 83 0 0 chr6 120220786 120220834 -62194408 + (TG)n Simple_repeat Simple_repeat 2 49 0 1939 164 7 3 chr6 120221441 120221746 -62193496 + AluJb SINE Alu 1 306 -6 2454 55 0 3 chr6 120222021 120222311 -62192931 - AluY SINE Alu -7 304 16 2243 113 10 0 chr6 120222339 120222640 -62192602 + AluSg SINE Alu 1 304 -6 398 299 43 8 chr6 120222762 120222879 -62192363 - MIR3 SINE MIR -39 169 49 2359 101 0 7 chr6 120223023 120223331 -62191911 - AluSx SINE Alu -6 306 1 825 266 105 20 chr6 120224645 120225058 -62190184 - L2 LINE L2 -97 3216 2764 653 250 33 7 chr6 120225233 120225385 -62189857 + MER97b DNA MER1_type? 1 156 -897 2298 92 3 0 chr6 120225497 120225790 -62189452 + AluSx SINE Alu 1 294 -18 1961 102 0 0 chr6 120225790 120226043 -62189199 + AluSc SINE Alu 33 287 -22 274 326 62 36 chr6 120226087 120226518 -62188724 - L2 LINE L2 -264 3008 2563 2253 119 0 3 chr6 120227161 120227471 -62187771 + AluSx SINE Alu 4 312 0 182 385 0 0 chr6 120227792 120227857 -62187385 - L2 LINE L2 -1 3271 3207 845 213 0 26 chr6 120227882 120228037 -62187205 - MER63A DNA MER1_type -4 206 56 434 298 117 56 chr6 120228052 120228394 -62186848 - L2 LINE L2 -77 3195 2833 200 122 24 0 chr6 120228755 120228796 -62186446 + (CA)n Simple_repeat Simple_repeat 1 42 0 201 156 89 44 chr6 120229970 120230015 -62185227 - MIR3 SINE MIR -11 197 151 503 286 137 0 chr6 120230427 120230602 -62184640 - MIR SINE MIR -18 244 46 239 279 97 55 chr6 120230783 120230948 -62184294 - MIR3 SINE MIR -34 174 3 423 318 101 26 chr6 120232785 120233029 -62182213 + L3b LINE CR1 1102 1375 -208 561 68 0 0 chr6 120233029 120233103 -62182139 + (TG)n Simple_repeat Simple_repeat 2 75 0 423 318 101 26 chr6 120233103 120233166 -62182076 + L3b LINE CR1 1375 1432 -151 442 136 15 0 chr6 120233233 120233299 -62181943 + AluS SINE Alu 2 68 -245 775 281 88 4 chr6 120233828 120234066 -62181176 + MIR SINE MIR 2 259 -3 2114 110 0 13 chr6 120234066 120234376 -62180866 + AluSx SINE Alu 1 306 -6 653 258 41 33 chr6 120234482 120234532 -62180710 + LTR33 LTR ERVL 246 294 -227 1941 137 90 22 chr6 120234532 120234897 -62180345 + MLT1B LTR MaLR 1 390 0 653 258 41 33 chr6 120234897 120235090 -62180152 + LTR33 LTR ERVL 294 491 -30 788 158 0 0 chr6 120235333 120235460 -62179782 - FLAM_A SINE Alu -5 128 2 1700 150 13 23 chr6 120235495 120235666 -62179576 - AluSx SINE Alu -9 303 135 2171 110 0 7 chr6 120235666 120235974 -62179268 - AluSx SINE Alu -6 306 1 1700 150 13 23 chr6 120235974 120236108 -62179134 - AluSx SINE Alu -177 135 1 1776 119 63 28 chr6 120236241 120236527 -62178715 + AluSg SINE Alu 1 296 -14 1785 164 0 10 chr6 120239536 120239835 -62175407 + AluJb SINE Alu 1 296 -16 2393 70 0 0 chr6 120239903 120240205 -62175037 + AluY SINE Alu 1 302 -9 236 277 0 0 chr6 120241354 120241419 -62173823 + L1MC4 LINE L1 7918 7982 -60 22 0 0 0 chr6 120241453 120241475 -62173767 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr6 120241650 120241701 -62173541 + AT_rich Low_complexity Low_complexity 1 51 0 195 100 0 0 chr6 120241732 120241762 -62173480 + (T)n Simple_repeat Simple_repeat 1 30 0 1569 141 118 7 chr6 120241999 120242269 -62172973 - AluJb SINE Alu -12 300 1 1976 141 0 3 chr6 120242304 120242609 -62172633 - AluJb SINE Alu -8 304 1 383 104 15 0 chr6 120242706 120242773 -62172469 + L1MD3 LINE L1 7928 7995 0 1697 171 0 7 chr6 120242955 120243259 -62171983 + AluJb SINE Alu 1 302 -10 2059 99 41 0 chr6 120243645 120243937 -62171305 + AluSg SINE Alu 1 304 -6 1865 152 3 0 chr6 120244047 120244343 -62170899 + AluJb SINE Alu 1 297 -15 2142 114 0 0 chr6 120246292 120246591 -62168651 + AluSx SINE Alu 1 299 -13 745 325 173 16 chr6 120247367 120247820 -62167422 + L2 LINE L2 2794 3312 -1 3766 111 29 0 chr6 120247914 120248426 -62166816 + MER1A DNA MER1_type 1 527 0 801 103 0 8 chr6 120249128 120249245 -62165997 + AluJb SINE Alu 18 133 -179 313 208 0 0 chr6 120249389 120249442 -62165800 - MIR SINE MIR 0 262 210 256 278 297 23 chr6 120249537 120249843 -62165399 + L2 LINE L2 2836 3225 -88 272 65 87 0 chr6 120250032 120250078 -62165164 - L2 LINE L2 -1 3312 3263 358 190 10 60 chr6 120251504 120251604 -62163638 - MIR SINE MIR 0 262 168 2038 114 7 3 chr6 120251861 120252159 -62163083 - AluSx SINE Alu -13 299 1 21 71 0 0 chr6 120252274 120252316 -62162926 + AT_rich Low_complexity Low_complexity 1 42 0 754 302 80 31 chr6 120252392 120252863 -62162379 - L1ME LINE L1 -308 5813 5317 393 302 60 26 chr6 120253287 120253671 -62161571 + L1ME4a LINE L1 5651 6118 -3 1822 101 47 34 chr6 120253676 120253972 -62161270 - AluSx SINE Alu -10 302 3 265 234 0 31 chr6 120254776 120254840 -62160402 - L2 LINE L2 -6 3307 3246 446 220 3 51 chr6 120255029 120255168 -62160074 + L1MB7 LINE L1 6052 6183 -1 195 42 0 0 chr6 120255427 120255451 -62159791 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 340 279 115 10 chr6 120255552 120255656 -62159586 - L3b LINE CR1 -37 1546 1432 386 244 102 57 chr6 120257049 120257295 -62157947 + L1MC4a LINE L1 5820 6076 -1732 211 271 0 0 chr6 120258263 120258311 -62156931 + CT-rich Low_complexity Low_complexity 3 50 0 2253 95 0 3 chr6 120258456 120258760 -62156482 + AluSx SINE Alu 1 303 -9 1765 139 7 10 chr6 120259246 120259541 -62155701 + AluJb SINE Alu 1 294 -18 2024 136 0 3 chr6 120259563 120259865 -62155377 + AluSq SINE Alu 1 301 -12 2327 71 0 0 chr6 120260162 120260457 -62154785 + AluSg SINE Alu 2 296 -14 1245 230 21 97 chr6 120260585 120260899 -62154343 + L2 LINE L2 2925 3201 -112 1611 160 6 47 chr6 120260899 120261068 -62154174 - AluJo SINE Alu -7 305 154 2267 85 0 0 chr6 120261068 120261361 -62153881 - AluSx SINE Alu -14 298 6 1611 160 6 47 chr6 120261361 120261509 -62153733 - AluJo SINE Alu -158 154 1 1245 230 21 97 chr6 120261509 120261615 -62153627 + L2 LINE L2 3201 3313 0 234 240 20 20 chr6 120261793 120261843 -62153399 - L2 LINE L2 -16 3256 3207 1080 251 118 58 chr6 120262833 120263383 -62151859 + L1MC4a LINE L1 2368 5926 0 206 229 21 0 chr6 120263393 120263441 -62151801 - MER5B DNA MER1_type -129 49 1 1157 174 0 32 chr6 120263600 120263819 -62151423 - AluJo SINE Alu -100 212 1 851 265 20 43 chr6 120264527 120264780 -62150462 + MIR SINE MIR 13 259 -3 245 321 87 76 chr6 120264914 120265098 -62150144 - MIR SINE MIR -14 248 63 965 172 19 51 chr6 120265146 120265361 -62149881 - MER58C DNA MER1_type 0 215 8 1075 283 0 4 chr6 120265442 120265693 -62149549 - MIR SINE MIR 0 262 13 213 163 0 0 chr6 120266915 120266964 -62148278 + T-rich Low_complexity Low_complexity 2 50 0 301 278 33 0 chr6 120267034 120267124 -62148118 + GA-rich Low_complexity Low_complexity 4 96 0 252 0 0 0 chr6 120267697 120267725 -62147517 + (CA)n Simple_repeat Simple_repeat 1 28 0 271 244 130 43 chr6 120269545 120269660 -62145582 - MIR3 SINE MIR -43 165 41 2344 26 10 26 chr6 120270886 120271194 -62144048 + AluY SINE Alu 2 304 -7 234 150 0 0 chr6 120271345 120271385 -62143857 + (CA)n Simple_repeat Simple_repeat 2 41 0 214 279 81 29 chr6 120271562 120271698 -62143544 + MIR3 SINE MIR 8 150 -58 1535 143 4 0 chr6 120272046 120272290 -62142952 - AluJo SINE Alu -20 292 48 7777 70 16 5 chr6 120272290 120273284 -62141958 + LTR13 LTR ERVK 3 1007 0 290 218 0 0 chr6 120273284 120273339 -62141903 - AluJo SINE Alu -245 55 1 213 233 11 89 chr6 120273350 120273440 -62141802 + L2 LINE L2 3184 3266 -6 1626 115 0 8 chr6 120274065 120274321 -62140921 - AluSx SINE Alu 0 302 49 476 305 50 6 chr6 120274597 120274776 -62140466 - MIR SINE MIR -73 189 4 2446 199 83 14 chr6 120275086 120275604 -62139638 - MLT2B3 LTR ERVL 0 554 1 2025 180 11 11 chr6 120275609 120275971 -62139271 - MLT1A1 LTR MaLR 0 365 4 2323 107 48 22 chr6 120275979 120276334 -62138908 - THE1B LTR MaLR 0 364 1 2238 75 0 0 chr6 120276343 120276678 -62138564 - AluY SINE Alu 0 335 1 1958 163 61 3 chr6 120277044 120277388 -62137854 + MLT1A1 LTR MaLR 2 365 0 193 261 22 0 chr6 120277495 120277541 -62137701 - L2 LINE L2 -25 3247 3201 1923 109 39 0 chr6 120277967 120278250 -62136992 - AluSx SINE Alu -18 294 1 350 236 135 0 chr6 120278552 120278641 -62136601 - MIR SINE MIR -10 252 152 4005 135 32 24 chr6 120279115 120279833 -62135409 + L1MB3 LINE L1 5459 6182 -1 368 255 69 29 chr6 120279836 120279938 -62135304 - MIR SINE MIR -80 182 77 523 294 25 6 chr6 120280896 120281056 -62134186 + MIR SINE MIR 8 170 -92 293 341 87 12 chr6 120281075 120281248 -62133994 - MER91A DNA MER1_type -7 189 4 2145 105 23 0 chr6 120281445 120281749 -62133493 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr6 120282052 120282087 -62133155 + AT_rich Low_complexity Low_complexity 1 35 0 1725 156 32 0 chr6 120282201 120282484 -62132758 + AluJb SINE Alu 1 292 -20 1979 140 0 0 chr6 120282486 120282801 -62132441 + AluSx SINE Alu 1 315 0 288 0 0 0 chr6 120282818 120282850 -62132392 + (TG)n Simple_repeat Simple_repeat 2 33 0 1115 266 53 10 chr6 120283062 120283363 -62131879 + MLT1J LTR MaLR 1 314 -197 564 184 10 0 chr6 120283363 120283466 -62131776 - L1M3 LINE L1 -367 5804 5701 232 111 83 0 chr6 120283475 120283511 -62131731 + MLT1J LTR MaLR 329 367 -144 360 43 0 0 chr6 120284001 120284047 -62131195 + (CA)n Simple_repeat Simple_repeat 1 46 0 1257 92 0 0 chr6 120284140 120284304 -62130938 - AluSg/x SINE Alu -16 296 133 2102 117 3 7 chr6 120284405 120284714 -62130528 - AluSx SINE Alu -2 310 3 430 202 32 0 chr6 120284966 120285060 -62130182 - MIR SINE MIR -146 116 20 789 220 93 0 chr6 120285675 120285857 -62129385 - MER63A DNA MER1_type -11 199 1 222 276 10 6 chr6 120285925 120286044 -62129198 + MER5B DNA MER1_type 1 178 0 2009 133 3 3 chr6 120286078 120286387 -62128855 + AluSx SINE Alu 1 309 -3 530 227 177 0 chr6 120286387 120286528 -62128714 - MER5A DNA MER1_type -15 174 9 2011 109 7 0 chr6 120286626 120286911 -62128331 - AluSx SINE Alu -25 287 1 853 171 0 0 chr6 120287599 120287728 -62127514 - FLAM_C SINE Alu -3 130 2 1058 68 0 0 chr6 120288567 120288699 -62126543 + AluSq/x SINE Alu 1 132 -180 3386 156 30 3 chr6 120289100 120289696 -62125546 + L1MB4 LINE L1 5569 6180 0 213 273 30 30 chr6 120290531 120290597 -62124645 + (CACCC)n Simple_repeat Simple_repeat 4 69 0 1972 139 3 0 chr6 120291737 120292031 -62123211 + AluSx SINE Alu 5 299 -13 2216 93 0 0 chr6 120292144 120292433 -62122809 + AluSx SINE Alu 1 289 -23 296 337 41 0 chr6 120292592 120292690 -62122552 + HAL1 LINE L1 10 111 -2396 261 297 11 33 chr6 120292731 120292822 -62122420 + HAL1 LINE L1 2410 2498 -9 297 356 79 34 chr6 120292823 120293000 -62122242 - L3b LINE CR1 -9 1574 1390 1674 200 139 88 chr6 120293513 120294249 -62120993 - LTR41 LTR ERVL 0 773 1 870 281 140 32 chr6 120294504 120294910 -62120332 + MLT1J2 LTR MaLR 1 450 0 38 51 0 0 chr6 120295414 120295473 -62119769 + AT_rich Low_complexity Low_complexity 1 59 0 195 42 0 0 chr6 120296222 120296246 -62118996 + (GA)n Simple_repeat Simple_repeat 1 24 0 552 306 27 7 chr6 120296984 120297131 -62118111 + MIR SINE MIR 2 151 -111 191 254 17 34 chr6 120297360 120297419 -62117823 + MIR SINE MIR 17 74 -134 415 227 87 60 chr6 120297552 120297702 -62117540 - MIR SINE MIR -7 255 102 268 263 189 0 chr6 120297709 120297804 -62117438 - MIR SINE MIR -56 206 94 2223 99 0 3 chr6 120297923 120298225 -62117017 - AluSg SINE Alu -9 301 1 3210 220 47 31 chr6 120298230 120299013 -62116229 - L1ME3 LINE L1 -35 6127 5322 2289 80 0 3 chr6 120299013 120299314 -62115928 - AluY SINE Alu -11 300 1 3210 220 47 31 chr6 120299314 120299467 -62115775 - L1ME3 LINE L1 -840 5322 5173 13996 42 1 3 chr6 120299480 120301956 -62113286 - L1PA5 LINE L1 0 6154 3690 7720 43 0 1 chr6 120301957 120302916 -62112326 + L1PA5 LINE L1 2733 3690 -2456 1701 244 84 21 chr6 120302930 120303306 -62111936 - L1ME3 LINE L1 -984 5162 4730 2116 101 0 10 chr6 120303306 120303603 -62111639 - AluSx SINE Alu -18 294 1 1701 244 84 21 chr6 120303603 120303845 -62111397 - L1ME3 LINE L1 -1416 4730 4505 3085 117 56 35 chr6 120303894 120304409 -62110833 + L1MB8 LINE L1 5591 6121 -57 2312 89 0 0 chr6 120304409 120304713 -62110529 + AluY SINE Alu 1 304 -7 3085 117 56 35 chr6 120304713 120304772 -62110470 + L1MB8 LINE L1 6121 6177 -1 2208 104 19 104 chr6 120304805 120305229 -62110013 + MLT1B LTR MaLR 3 390 0 2409 87 0 0 chr6 120305348 120305658 -62109584 - AluSp SINE Alu -3 310 1 1992 115 0 45 chr6 120306309 120306450 -62108792 + AluSx SINE Alu 6 152 -160 2447 44 0 0 chr6 120306450 120306746 -62108496 + AluY SINE Alu 1 296 -15 1992 115 0 45 chr6 120306746 120306918 -62108324 + AluSx SINE Alu 152 305 -7 201 247 176 35 chr6 120307032 120307117 -62108125 - MIR SINE MIR -159 103 7 238 231 16 132 chr6 120307449 120307570 -62107672 + MLT1E2 LTR MaLR 492 598 -28 288 239 30 0 chr6 120307627 120307694 -62107548 + MER5A DNA MER1_type 10 78 -111 29 0 0 0 chr6 120307750 120307779 -62107463 + AT_rich Low_complexity Low_complexity 1 29 0 520 264 150 32 chr6 120307782 120308135 -62107107 + L1ME3 LINE L1 5625 6016 -105 1626 128 57 39 chr6 120308275 120308557 -62106685 + AluJo SINE Alu 11 297 -15 1963 119 0 0 chr6 120308806 120309084 -62106158 + AluY SINE Alu 1 278 -33 2189 124 11 61 chr6 120310027 120310324 -62104918 + MLT1A1 LTR MaLR 7 317 -48 588 242 8 0 chr6 120310324 120310452 -62104790 + FLAM_A SINE Alu 1 129 -4 2252 108 0 6 chr6 120310454 120310768 -62104474 + AluSx SINE Alu 1 312 0 2189 124 11 61 chr6 120310768 120310845 -62104397 + MLT1A1 LTR MaLR 318 365 0 242 341 12 0 chr6 120310845 120310927 -62104315 - MER5A DNA MER1_type -46 143 61 554 188 30 0 chr6 120310940 120311041 -62104201 - U13 snRNA snRNA 0 104 1 2036 92 41 17 chr6 120311070 120311363 -62103879 + AluSx SINE Alu 1 300 -12 185 333 78 11 chr6 120313221 120313311 -62101931 - L2 LINE L2 -575 2739 2644 1094 176 115 25 chr6 120313450 120313531 -62101711 + AluJo SINE Alu 23 95 -217 369 0 0 0 chr6 120313531 120313572 -62101670 + (CA)n Simple_repeat Simple_repeat 2 42 0 1094 176 115 25 chr6 120313572 120313734 -62101508 + AluJo SINE Alu 95 288 -24 2267 86 0 10 chr6 120313746 120314059 -62101183 + AluSq SINE Alu 3 312 -1 352 202 0 83 chr6 120314075 120314159 -62101083 - MIR SINE MIR -94 114 38 459 298 25 0 chr6 120314311 120314432 -62100810 + MIR SINE MIR 106 229 -33 2137 129 9 40 chr6 120314443 120314791 -62100451 - MER1B DNA MER1_type 0 337 1 1109 217 14 0 chr6 120314874 120315095 -62100147 - MER58A DNA MER1_type 0 224 1 523 229 9 0 chr6 120315115 120315220 -62100022 + L2 LINE L2 3206 3311 -2 625 279 32 0 chr6 120315919 120316077 -62099165 - MLT1G1 LTR MaLR -2 593 431 1025 266 37 28 chr6 120316079 120316406 -62098836 + MLT1G1 LTR MaLR 259 588 -7 953 231 16 0 chr6 120316846 120317028 -62098214 + MER91B DNA MER1_type 1 185 -5 22 0 0 0 chr6 120317289 120317311 -62097931 + AT_rich Low_complexity Low_complexity 1 22 0 1522 180 0 24 chr6 120317311 120317605 -62097637 - AluJo SINE Alu -18 294 8 297 0 0 0 chr6 120318833 120318866 -62096376 + (CA)n Simple_repeat Simple_repeat 2 34 0 208 91 45 0 chr6 120319430 120319474 -62095768 + GA-rich Low_complexity Low_complexity 1 46 0 296 335 133 57 chr6 120319639 120319902 -62095340 + L2 LINE L2 2987 3269 -3 220 293 123 28 chr6 120320101 120320207 -62095035 + L2 LINE L2 1323 1438 -1876 969 194 0 53 chr6 120320481 120320687 -62094555 + AluJo SINE Alu 86 280 -32 784 176 0 0 chr6 120320720 120320839 -62094403 + FLAM_A SINE Alu 1 119 -14 307 343 49 0 chr6 120321187 120321289 -62093953 - L2 LINE L2 -27 3245 3139 22 0 0 0 chr6 120321693 120321715 -62093527 + AT_rich Low_complexity Low_complexity 1 22 0 2341 91 0 0 chr6 120322583 120322890 -62092352 - AluSc SINE Alu -2 307 1 852 232 139 15 chr6 120322918 120323177 -62092065 + AluYa8 SINE Alu 6 296 -14 22 35 0 0 chr6 120323671 120323700 -62091542 + AT_rich Low_complexity Low_complexity 1 29 0 2025 101 14 0 chr6 120323892 120324194 -62091048 + AluSg SINE Alu 1 306 0 308 310 82 49 chr6 120324364 120324548 -62090694 - MIR3 SINE MIR -2 206 17 26 30 0 0 chr6 120325835 120325868 -62089374 + AT_rich Low_complexity Low_complexity 1 33 0 921 213 62 4 chr6 120326707 120326951 -62088291 + L1ME1 LINE L1 5796 6053 -113 604 142 212 0 chr6 120326961 120327074 -62088168 - MER58C DNA MER1_type -3 212 76 419 225 54 0 chr6 120327106 120327217 -62088025 + L1ME1 LINE L1 6046 6162 -4 356 191 32 127 chr6 120328536 120328693 -62086549 + MER46C DNA MER2_type 2 143 -195 224 280 27 0 chr6 120329305 120329380 -62085862 + CT-rich Low_complexity Low_complexity 3 79 0 931 191 157 0 chr6 120329700 120329904 -62085338 - MER46A DNA MER2_type 0 236 1 25 0 0 0 chr6 120329951 120329976 -62085266 + AT_rich Low_complexity Low_complexity 1 25 0 2176 141 0 3 chr6 120330224 120330536 -62084706 - AluSx SINE Alu -1 311 1 1212 62 0 0 chr6 120330609 120330753 -62084489 - AluSg/x SINE Alu -6 304 161 1633 166 0 0 chr6 120331194 120331441 -62083801 + AluJb SINE Alu 31 277 -35 1770 150 0 59 chr6 120331862 120332168 -62083074 - AluJo SINE Alu -24 288 1 2353 99 0 13 chr6 120333766 120334078 -62081164 + AluSx SINE Alu 1 308 -4 237 324 156 29 chr6 120334373 120334611 -62080631 - L2 LINE L2 0 3272 3005 953 221 184 18 chr6 120334714 120335219 -62080023 + L2 LINE L2 2714 3307 -6 276 248 26 43 chr6 120336083 120336200 -62079042 + HAL1b LINE L1 531 645 -703 186 43 0 0 chr6 120338236 120338259 -62076983 + (T)n Simple_repeat Simple_repeat 1 23 0 185 213 147 27 chr6 120338849 120338924 -62076318 - L2 LINE L2 -643 2671 2588 2167 112 3 0 chr6 120340125 120340471 -62074771 + AluSx SINE Alu 1 347 0 200 308 77 0 chr6 120342162 120342227 -62073015 - MER91 DNA MER1_type -70 70 1 410 0 20 0 chr6 120342722 120342772 -62072470 + (TG)n Simple_repeat Simple_repeat 2 52 0 331 297 88 42 chr6 120343122 120343477 -62071765 + L2 LINE L2 2184 3266 -6 228 344 92 20 chr6 120343667 120343917 -62071325 + L2 LINE L2 2824 3091 -181 289 308 84 21 chr6 120344008 120344151 -62071091 + L2 LINE L2 3121 3272 0 363 304 93 21 chr6 120344819 120345013 -62070229 - L2 LINE L2 -1 3312 3105 239 288 169 17 chr6 120344992 120345110 -62070132 - L2 LINE L2 -457 2857 2722 * 1113 157 18 103 chr6 120345562 120345646 -62069596 - AluJo SINE Alu -108 204 114 2168 117 7 0 chr6 120345646 120345936 -62069306 - AluSx SINE Alu -15 297 6 1113 157 18 103 chr6 120345936 120346074 -62069168 - AluJo SINE Alu -198 114 1 217 268 85 0 chr6 120346357 120346439 -62068803 - L2 LINE L2 -15 3257 3169 * 313 266 110 26 chr6 120346408 120346562 -62068680 - MIR SINE MIR -95 167 1 468 248 113 0 chr6 120347383 120347524 -62067718 + MIR SINE MIR 106 262 0 215 61 30 0 chr6 120349631 120349664 -62065578 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 309 68 0 0 chr6 120352211 120352255 -62062987 + (TG)n Simple_repeat Simple_repeat 2 45 0 622 279 6 6 chr6 120352404 120352565 -62062677 - MIR SINE MIR -87 175 15 186 103 0 0 chr6 120352655 120352684 -62062558 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 317 286 131 30 chr6 120352745 120352913 -62062329 - MIR SINE MIR -65 197 13 571 258 15 2 chr6 120353730 120353922 -62061320 - MIR SINE MIR -65 143 3 1793 240 89 9 chr6 120354009 120354551 -62060691 + L1ME3 LINE L1 5578 6162 0 268 320 52 33 chr6 120355007 120355160 -62060082 + L2 LINE L2 2328 2483 -831 628 302 53 9 chr6 120355252 120355477 -62059765 - MIR SINE MIR 0 262 28 431 164 69 43 chr6 120356438 120356554 -62058688 + MIR SINE MIR 2 120 -142 234 192 0 0 chr6 120357825 120357877 -62057365 + GA-rich Low_complexity Low_complexity 6 57 0 292 204 182 0 chr6 120358318 120358406 -62056836 + LTR33 LTR ERVL 33 136 -385 263 301 90 30 chr6 120358502 120358635 -62056607 + LTR33 LTR ERVL 303 443 -78 872 212 5 16 chr6 120359697 120359886 -62055356 + MER5A DNA MER1_type 2 188 -1 23 33 0 0 chr6 120361296 120361326 -62053916 + AT_rich Low_complexity Low_complexity 1 30 0 339 257 0 0 chr6 120361834 120361908 -62053334 + MIR3 SINE MIR 119 192 -16 23 33 0 0 chr6 120362035 120362065 -62053177 + AT_rich Low_complexity Low_complexity 1 30 0 215 226 16 16 chr6 120362677 120362739 -62052503 - MIR SINE MIR -11 251 190 2375 78 3 26 chr6 120362739 120363046 -62052196 - AluSp SINE Alu -13 300 1 475 255 125 48 chr6 120363329 120363416 -62051826 - MIR SINE MIR -14 248 169 2271 102 0 0 chr6 120363416 120363709 -62051533 + AluSc SINE Alu 1 293 -16 475 255 125 48 chr6 120363709 120363838 -62051404 - MIR SINE MIR -93 169 19 225 0 0 0 chr6 120364527 120364552 -62050690 + (T)n Simple_repeat Simple_repeat 1 25 0 214 70 0 47 chr6 120365764 120365807 -62049435 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 2032 119 0 0 chr6 120369087 120369356 -62045886 + AluSx SINE Alu 3 271 -41 212 0 36 0 chr6 120369366 120369394 -62045848 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 2185 133 0 0 chr6 120369395 120369703 -62045539 + AluY SINE Alu 2 309 -2 1623 129 84 28 chr6 120369989 120370180 -62045062 - AluJb SINE Alu -2 310 96 1906 136 11 0 chr6 120370180 120370459 -62044783 + AluSx SINE Alu 1 282 -30 1623 129 84 28 chr6 120370459 120370554 -62044688 - AluJb SINE Alu -216 96 8 31 44 0 0 chr6 120371288 120371333 -62043909 + AT_rich Low_complexity Low_complexity 1 45 0 861 224 208 29 chr6 120372087 120372399 -62042843 - MER113 DNA MER1_type? -113 408 41 340 278 91 21 chr6 120377163 120377350 -62037892 + MIR SINE MIR 63 262 0 621 185 64 70 chr6 120377371 120377470 -62037772 + L1ME3A LINE L1 6015 6114 -56 701 91 9 27 chr6 120377470 120377580 -62037662 - L1MB3 LINE L1 -2 6181 6074 621 185 64 70 chr6 120377580 120377637 -62037605 + L1ME3A LINE L1 6114 6170 0 845 130 0 36 chr6 120379856 120379994 -62035248 - FLAM_C SINE Alu 0 133 1 1004 236 141 39 chr6 120379998 120380462 -62034780 + MLT1F1 LTR MaLR 7 493 -50 22 0 0 0 chr6 120381306 120381328 -62033914 + AT_rich Low_complexity Low_complexity 1 22 0 2444 77 7 3 chr6 120381397 120381697 -62033545 - AluSq SINE Alu -12 301 1 406 137 0 14 chr6 120381915 120381988 -62033254 + MLT1F1 LTR MaLR 520 591 -2 2351 89 0 7 chr6 120382075 120382377 -62032865 - AluSq SINE Alu -13 300 1 272 282 70 64 chr6 120383984 120384140 -62031102 - MER5B DNA MER1_type -21 157 1 262 322 25 0 chr6 120385470 120385591 -62029651 + L2 LINE L2 2369 2492 -822 343 250 10 39 chr6 120385876 120385980 -62029262 + L2 LINE L2 3173 3273 -40 1934 85 100 4 chr6 120386058 120386318 -62028924 - AluSx SINE Alu -27 285 1 1219 171 0 40 chr6 120387230 120387458 -62027784 + MER20 DNA MER1_type 1 219 0 530 214 9 0 chr6 120387878 120387990 -62027252 + L2 LINE L2 3201 3313 0 1031 238 159 45 chr6 120390378 120390908 -62024334 + MLT1E1 LTR MaLR 1 654 0 404 278 118 14 chr6 120391023 120391167 -62024075 - MIR SINE MIR -70 192 34 2185 124 26 40 chr6 120391321 120391701 -62023541 + THE1C LTR MaLR 1 375 0 2960 159 25 6 chr6 120392939 120393466 -62021776 - L1MB7 LINE L1 0 6184 5648 381 284 82 72 chr6 120393541 120393805 -62021437 + L1ME4a LINE L1 5350 5623 -498 2105 125 7 3 chr6 120393805 120394101 -62021141 + AluSx SINE Alu 1 297 -15 381 284 82 72 chr6 120394101 120394350 -62020892 + L1ME4a LINE L1 5623 5868 -253 248 296 89 15 chr6 120394402 120394537 -62020705 + L1ME4a LINE L1 5975 6119 -2 680 290 93 35 chr6 120397152 120397583 -62017659 + MLT1J LTR MaLR 15 470 -41 333 267 137 0 chr6 120397800 120397982 -62017260 - MIR SINE MIR 0 262 45 1904 150 4 0 chr6 120398419 120398738 -62016504 + AluJb SINE Alu 1 320 0 407 287 223 19 chr6 120399444 120399758 -62015484 - L2 LINE L2 -5 3267 2890 279 257 57 19 chr6 120399787 120399892 -62015350 - L2 LINE L2 -17 3296 3188 190 265 204 20 chr6 120399967 120400114 -62015128 - MIR SINE MIR -12 250 77 3717 178 43 14 chr6 120401755 120402494 -62012748 - MER21B LTR ERV1 -53 810 2 238 239 28 22 chr6 120402786 120402878 -62012364 + L1ME LINE L1 5574 5666 -504 1852 141 4 0 chr6 120404436 120404706 -62010536 - AluSg SINE Alu -11 299 29 420 313 120 4 chr6 120404815 120405090 -62010152 + L1ME4a LINE L1 5592 5898 -223 1007 299 78 25 chr6 120405104 120405476 -62009766 + L2 LINE L2 2629 3072 -241 1475 157 50 19 chr6 120405476 120405737 -62009505 + AluJb SINE Alu 37 305 -7 1007 299 78 25 chr6 120405737 120405973 -62009269 + L2 LINE L2 3072 3294 -19 298 299 26 0 chr6 120406246 120406323 -62008919 - L3b LINE CR1 -2 1581 1503 675 239 21 27 chr6 120406360 120406548 -62008694 - MER5A DNA MER1_type -1 188 2 339 314 16 8 chr6 120406779 120406900 -62008342 - MIR SINE MIR -119 143 22 2376 91 0 0 chr6 120407581 120407878 -62007364 - AluSg SINE Alu -13 297 1 299 368 0 48 chr6 120409226 120409392 -62005850 + MIR SINE MIR 59 216 -46 189 107 0 0 chr6 120409718 120409746 -62005496 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 195 184 0 0 chr6 120409746 120409784 -62005458 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 1520 197 46 33 chr6 120410779 120411210 -62004032 - L1ME2 LINE L1 0 6164 5773 329 204 0 11 chr6 120411420 120411508 -62003734 + GA-rich Low_complexity Low_complexity 2 88 0 232 304 191 0 chr6 120412431 120412546 -62002696 - MIR SINE MIR -10 252 116 905 151 61 49 chr6 120413249 120413494 -62001748 + MER33 DNA MER1_type 55 302 -22 217 264 146 9 chr6 120413655 120413765 -62001477 + MIR3 SINE MIR 67 191 -17 22 35 0 0 chr6 120414387 120414416 -62000826 + AT_rich Low_complexity Low_complexity 1 29 0 2638 131 41 5 chr6 120414753 120415165 -62000077 + MSTA LTR MaLR 2 428 0 217 222 0 22 chr6 120415241 120415286 -61999956 + CT-rich Low_complexity Low_complexity 5 48 0 21 0 0 0 chr6 120415329 120415350 -61999892 + AT_rich Low_complexity Low_complexity 1 21 0 1786 172 14 3 chr6 120416234 120416531 -61998711 - AluJo SINE Alu -12 300 1 25 65 0 0 chr6 120416622 120416668 -61998574 + AT_rich Low_complexity Low_complexity 1 46 0 197 139 23 0 chr6 120416844 120416887 -61998355 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1010 328 88 17 chr6 120417884 120418420 -61996822 + L3 LINE CR1 435 1008 -569 201 171 0 0 chr6 120419728 120419763 -61995479 + MIR3 SINE MIR 148 182 -26 2158 269 90 62 chr6 120419999 120421814 -61993428 + L1ME4a LINE L1 2482 4347 -1799 432 259 109 65 chr6 120422720 120423041 -61992201 + L1ME4a LINE L1 5729 6063 -58 210 220 0 0 chr6 120424273 120424323 -61990919 - L2 LINE L2 -3 3269 3220 192 323 15 0 chr6 120425869 120425934 -61989308 - MIR SINE MIR -150 112 47 2552 117 11 8 chr6 120426936 120427313 -61987929 + MER4D LTR ERV1 1 378 -494 1065 102 48 54 chr6 120427314 120427500 -61987742 + MER30B DNA MER1_type 1 185 -5 2636 125 34 65 chr6 120427504 120428008 -61987234 + MER4D LTR ERV1 385 872 0 390 258 172 5 chr6 120428354 120428563 -61986679 + MIR SINE MIR 3 246 -16 347 178 54 62 chr6 120428656 120428785 -61986457 + L1MC5 LINE L1 7802 7929 -32 351 113 0 0 chr6 120428828 120428881 -61986361 + (A)n Simple_repeat Simple_repeat 1 53 0 1294 190 65 30 chr6 120429816 120430153 -61985089 + MLT1B LTR MaLR 1 349 -41 21 0 0 0 chr6 120430381 120430402 -61984840 + AT_rich Low_complexity Low_complexity 1 21 0 198 282 47 47 chr6 120430544 120430693 -61984549 - L2 LINE L2 -470 2844 2696 315 296 204 5 chr6 120430719 120430905 -61984337 - MIR SINE MIR -19 243 21 2925 101 0 8 chr6 120431121 120431497 -61983745 - THE1C LTR MaLR 0 375 3 2220 101 3 7 chr6 120432014 120432311 -61982931 - AluSc SINE Alu -13 296 1 239 360 137 0 chr6 120432785 120432938 -61982304 + L2 LINE L2 3099 3272 0 254 132 0 0 chr6 120433066 120433104 -61982138 - L1ME1 LINE L1 -6 6160 6123 307 322 25 25 chr6 120433156 120433274 -61981968 - MER5B DNA MER1_type -60 118 1 1102 205 104 17 chr6 120434702 120435000 -61980242 + MER33 DNA MER1_type 1 324 0 1317 160 242 38 chr6 120435192 120435560 -61979682 - MSTB2 LTR MaLR 0 457 15 228 276 0 0 chr6 120436329 120436387 -61978855 + Charlie8 DNA MER1_type 73 130 -2287 236 158 0 0 chr6 120436655 120436693 -61978549 + MIR SINE MIR 82 119 -89 597 281 75 52 chr6 120436921 120437842 -61977400 + L1MC4 LINE L1 7065 8037 -5 215 170 21 0 chr6 120437896 120437943 -61977299 + GA-rich Low_complexity Low_complexity 1 48 0 326 319 15 7 chr6 120438124 120438259 -61976983 + C-rich Low_complexity Low_complexity 5 140 0 236 348 0 27 chr6 120438391 120438569 -61976673 + C-rich Low_complexity Low_complexity 1 173 0 224 182 45 0 chr6 120438686 120438730 -61976512 + GA-rich Low_complexity Low_complexity 5 50 0 348 205 19 124 chr6 120439546 120439707 -61975535 - MER20B DNA MER1_type -606 177 34 2142 122 0 0 chr6 120439841 120440128 -61975114 - AluSx SINE Alu -25 287 1 353 312 43 28 chr6 120440769 120440910 -61974332 - MER5A DNA MER1_type 0 189 47 974 187 4 95 chr6 120442533 120442774 -61972468 - MER20 DNA MER1_type 0 219 1 222 332 105 41 chr6 120443169 120443464 -61971778 + L3 LINE CR1 1023 1336 -241 348 225 63 45 chr6 120443464 120443575 -61971667 - L2 LINE L2 -8 3305 3193 648 156 0 0 chr6 120443608 120443777 -61971465 - AluSg/x SINE Alu 0 370 202 957 112 0 0 chr6 120443778 120443903 -61971339 - AluSc SINE Alu -184 125 1 369 265 15 23 chr6 120443973 120444105 -61971137 - L1ME1 LINE L1 -3 6163 6033 225 0 0 0 chr6 120444231 120444256 -61970986 + (T)n Simple_repeat Simple_repeat 1 25 0 615 241 197 0 chr6 120444939 120445142 -61970100 - MIR SINE MIR 0 262 20 656 214 38 71 chr6 120446119 120446329 -61968913 + MIR SINE MIR 59 261 -1 1037 215 222 10 chr6 120446792 120447202 -61968040 - Charlie4a DNA MER1_type 0 508 12 374 224 245 14 chr6 120448931 120449074 -61966168 + MER5A DNA MER1_type 14 189 0 455 231 22 0 chr6 120449086 120449177 -61966065 + MLT1L LTR MaLR 169 261 -354 258 246 0 15 chr6 120449372 120449437 -61965805 + MLT1L LTR MaLR 548 611 -4 408 228 119 0 chr6 120450419 120450520 -61964722 + L2 LINE L2 3201 3313 0 285 280 136 0 chr6 120450643 120450761 -61964481 - MIR3 SINE MIR -15 193 60 3255 60 3 3 chr6 120450779 120451165 -61964077 - L1PA5 LINE L1 0 6154 5769 7743 38 1 0 chr6 120451175 120452619 -61962623 - L1PA5 LINE L1 -6 6148 4709 219 245 75 0 chr6 120452707 120452760 -61962482 + L2 LINE L2 3255 3311 -2 192 271 14 29 chr6 120454403 120454473 -61960769 - L2 LINE L2 -1058 2256 2188 459 0 0 0 chr6 120455356 120455407 -61959835 + (CA)n Simple_repeat Simple_repeat 2 52 0 213 316 79 13 chr6 120455772 120455848 -61959394 + MIR SINE MIR 25 105 -103 2260 217 80 80 chr6 120455924 120456482 -61958760 + L1ME3A LINE L1 4394 4950 -1220 1934 217 44 18 chr6 120456482 120456934 -61958308 + MLT1C LTR MaLR 4 467 0 2260 217 80 80 chr6 120456934 120458158 -61957084 + L1ME3A LINE L1 4950 6170 0 1976 170 43 0 chr6 120459628 120459952 -61955290 + MER58B DNA MER1_type 1 338 -3 285 266 124 47 chr6 120460111 120460219 -61955023 - MER112 DNA MER1_type -11 249 122 2565 156 5 5 chr6 120460219 120460609 -61954633 + MLT1B LTR MaLR 1 390 0 285 266 124 47 chr6 120460609 120460669 -61954573 - MER112 DNA MER1_type -138 122 68 368 256 179 8 chr6 120460824 120460941 -61954301 - MIR SINE MIR -49 213 77 724 279 45 16 chr6 120461057 120461301 -61953941 - MIR SINE MIR 0 262 12 2284 142 32 6 chr6 120461342 120461681 -61953561 + MER7A DNA MER2_type 1 346 0 363 209 0 0 chr6 120461736 120461803 -61953439 - L2 LINE L2 -2 3270 3204 24 32 0 0 chr6 120461982 120462013 -61953229 + AT_rich Low_complexity Low_complexity 1 31 0 450 279 128 22 chr6 120462526 120462752 -61952490 + L1ME4a LINE L1 5638 5887 -234 423 0 0 0 chr6 120462774 120462821 -61952421 + (TA)n Simple_repeat Simple_repeat 1 47 0 2340 91 0 3 chr6 120462875 120463172 -61952070 - AluSx SINE Alu -16 296 1 21 36 0 0 chr6 120463424 120463452 -61951790 + AT_rich Low_complexity Low_complexity 1 28 0 357 239 0 0 chr6 120463554 120463621 -61951621 - L2 LINE L2 0 3272 3206 382 300 23 15 chr6 120463755 120463885 -61951357 + MIR SINE MIR 58 188 -74 2308 116 62 73 chr6 120467158 120467545 -61947697 + MSTA LTR MaLR 1 384 -44 2196 103 14 0 chr6 120467545 120467837 -61947405 - AluSx SINE Alu -16 296 1 2308 116 62 73 chr6 120467837 120467871 -61947371 + MSTA LTR MaLR 384 417 -11 216 359 109 19 chr6 120469927 120470083 -61945159 + MIR3 SINE MIR 16 185 -23 626 168 255 13 chr6 120470420 120470569 -61944673 - MER53 DNA DNA -4 185 1 309 250 19 46 chr6 120472793 120472901 -61942341 - MER5A DNA MER1_type -71 118 14 2272 129 0 0 chr6 120472936 120473246 -61941996 + AluSg SINE Alu 1 310 0 980 241 164 40 chr6 120473335 120473755 -61941487 - LTR33 LTR ERVL -2 519 48 571 215 103 33 chr6 120474709 120475028 -61940214 - MER113 DNA MER1_type? -154 367 1 255 61 0 0 chr6 120477707 120477740 -61937502 + (T)n Simple_repeat Simple_repeat 1 33 0 201 323 75 23 chr6 120477827 120477960 -61937282 + MIR SINE MIR 69 208 -54 373 289 0 0 chr6 120478743 120478826 -61936416 + MIR SINE MIR 90 172 -90 24 0 0 0 chr6 120479870 120479894 -61935348 + AT_rich Low_complexity Low_complexity 1 24 0 1775 145 69 3 chr6 120480818 120481107 -61934135 - AluJo SINE Alu -3 309 2 605 265 131 18 chr6 120481684 120482020 -61933222 + L1ME LINE L1 5391 5764 -357 399 190 13 25 chr6 120482018 120482097 -61933145 + L2 LINE L2 3233 3310 -3 * 23 0 0 0 chr6 120484932 120484955 -61930287 + AT_rich Low_complexity Low_complexity 1 23 0 7850 37 6 0 chr6 120486217 120487828 -61927414 + L1PA5 LINE L1 4616 6231 0 476 228 101 63 chr6 120488364 120488553 -61926689 - Charlie8 DNA MER1_type -2185 232 37 494 280 58 34 chr6 120490484 120490691 -61924551 + MIR SINE MIR 21 232 -30 195 129 0 0 chr6 120491459 120491490 -61923752 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 292 279 105 65 chr6 120491736 120491965 -61923277 + L2 LINE L2 3063 3300 -13 296 250 148 19 chr6 120491998 120492106 -61923136 - MIR3 SINE MIR -5 203 82 546 189 37 79 chr6 120493409 120493452 -61921790 + MER103 DNA DNA 8 51 -115 3688 135 35 2 chr6 120493452 120494031 -61921211 + L1MB2 LINE L1 5574 6171 0 546 189 37 79 chr6 120494031 120494151 -61921091 + MER103 DNA DNA 51 164 -2 303 313 42 28 chr6 120494337 120494519 -61920723 + MIR SINE MIR 42 223 -39 460 307 95 11 chr6 120494695 120494884 -61920358 + MIR3 SINE MIR 1 205 -3 180 279 59 0 chr6 120494919 120494987 -61920255 - L2 LINE L2 -4 3309 3238 1038 230 8 23 chr6 120497361 120497626 -61917616 - L1M4 LINE L1 -1711 4435 4175 273 302 47 18 chr6 120497643 120497812 -61917430 - L1ME4a LINE L1 -224 5897 5724 710 273 96 40 chr6 120498835 120499157 -61916085 + L1ME3A LINE L1 5541 5880 -290 4312 56 6 8 chr6 120500500 120501014 -61914228 - LTR10D LTR ERV1 0 513 1 21 0 0 0 chr6 120501534 120501555 -61913687 + AT_rich Low_complexity Low_complexity 1 21 0 221 0 35 0 chr6 120501556 120501585 -61913657 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1717 173 20 10 chr6 120501591 120501897 -61913345 + AluJb SINE Alu 1 309 -3 599 333 128 26 chr6 120503477 120503828 -61911414 + L3 LINE CR1 416 802 -775 718 327 42 47 chr6 120504475 120504900 -61910342 + L3 LINE CR1 869 1291 -286 238 260 236 8 chr6 120504966 120505089 -61910153 + MIR3 SINE MIR 50 200 -8 1374 197 213 21 chr6 120505290 120505712 -61909530 + MLT1D LTR MaLR 1 503 -2 278 320 80 27 chr6 120506536 120506686 -61908556 + MIR3 SINE MIR 5 162 -46 216 0 0 0 chr6 120507097 120507121 -61908121 + (CA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr6 120509948 120509969 -61905273 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 285 321 0 0 chr6 120510032 120510113 -61905129 - MIR SINE MIR -65 143 63 208 352 11 11 chr6 120511129 120511220 -61904022 + L2 LINE L2 3182 3272 0 294 87 0 0 chr6 120512014 120512060 -61903182 + (CA)n Simple_repeat Simple_repeat 2 47 0 231 136 68 34 chr6 120516397 120516456 -61898786 - L1ME4a LINE L1 0 6121 6061 832 301 51 36 chr6 120516823 120517158 -61898084 - MER102b DNA MER1_type 0 341 2 403 285 92 34 chr6 120517480 120517687 -61897555 - L2 LINE L2 -1445 1869 1651 1380 201 0 0 chr6 120518741 120518980 -61896262 - AluJb SINE Alu -26 286 48 2274 221 80 8 chr6 120520847 120521444 -61893798 - MER114 LTR ERV 0 648 9 22 94 0 0 chr6 120521587 120521651 -61893591 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr6 120523946 120523968 -61891274 + AT_rich Low_complexity Low_complexity 1 22 0 1209 218 84 38 chr6 120524910 120525324 -61889918 + MLT1C LTR MaLR 32 465 -2 226 266 0 16 chr6 120527743 120527807 -61887435 + MIR SINE MIR 39 101 -107 676 218 61 0 chr6 120529374 120529539 -61885703 + MIR SINE MIR 12 186 -76 527 257 86 0 chr6 120529917 120530069 -61885173 + MIR SINE MIR 60 224 -38 207 200 0 0 chr6 120531187 120531222 -61884020 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 813 240 36 5 chr6 120531247 120531444 -61883798 - MIR SINE MIR -21 241 34 2111 110 0 0 chr6 120531444 120531750 -61883492 - AluSx SINE Alu 0 306 1 813 240 36 5 chr6 120531750 120531772 -61883470 - MIR SINE MIR -228 34 14 321 249 9 42 chr6 120531800 120531906 -61883336 + MIR3 SINE MIR 72 175 -33 237 279 69 85 chr6 120532124 120532298 -61882944 + L2 LINE L2 2081 2251 -1063 2055 119 58 0 chr6 120532298 120532591 -61882651 + AluSq SINE Alu 1 310 -3 237 279 69 85 chr6 120532591 120532663 -61882579 + L2 LINE L2 2251 2323 -991 191 313 119 31 chr6 120532833 120532993 -61882249 + L2 LINE L2 2600 2773 -541 881 245 90 29 chr6 120533776 120534021 -61881221 + MIR SINE MIR 3 262 0 237 392 54 8 chr6 120534028 120534158 -61881084 + L2 LINE L2 3137 3272 0 253 258 45 71 chr6 120534341 120534496 -61880746 + MIR3 SINE MIR 6 156 -52 1777 170 0 10 chr6 120534500 120534788 -61880454 - AluJb SINE Alu -13 299 15 182 308 0 39 chr6 120535090 120535142 -61880100 + L2 LINE L2 3137 3186 -86 960 236 83 62 chr6 120535148 120535584 -61879658 + MLT1J1 LTR MaLR 2 446 0 277 325 32 32 chr6 120535798 120535921 -61879321 - L2 LINE L2 -213 3059 2937 247 324 20 34 chr6 120537420 120537568 -61877674 + G-rich Low_complexity Low_complexity 2 147 0 35 41 0 0 chr6 120537974 120538023 -61877219 + GC_rich Low_complexity Low_complexity 1 49 0 24 67 0 0 chr6 120538131 120538176 -61877066 + GC_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr6 120538203 120538239 -61877003 + GC_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr6 120538250 120538293 -61876949 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 120538392 120538413 -61876829 + GC_rich Low_complexity Low_complexity 1 21 0 290 239 0 0 chr6 120539812 120539879 -61875363 - MIR SINE MIR -112 150 84 330 291 50 54 chr6 120540120 120540140 -61875102 + MIR SINE MIR 4 23 -206 933 251 0 5 chr6 120540140 120540327 -61874915 - MER5A DNA MER1_type 0 189 4 330 291 50 54 chr6 120540327 120540339 -61874903 + MIR SINE MIR 23 34 -195 1228 185 58 65 chr6 120540339 120540664 -61874578 + MER33 DNA MER1_type 2 324 0 330 291 50 54 chr6 120540664 120540794 -61874448 + MIR SINE MIR 34 166 -63 348 83 0 0 chr6 120540930 120540978 -61874264 + (TC)n Simple_repeat Simple_repeat 2 49 0 625 268 72 82 chr6 120541780 120542393 -61872849 + L1ME4a LINE L1 5513 6119 -2 1513 195 60 13 chr6 120542635 120542933 -61872309 + AluJo SINE Alu 1 312 0 298 163 0 0 chr6 120544349 120544398 -61870844 - LTR67 LTR ERVL 0 557 509 1626 174 53 0 chr6 120544398 120544680 -61870562 + AluJb SINE Alu 1 297 -15 396 243 0 19 chr6 120544713 120544816 -61870426 - LTR67 LTR ERVL -29 528 428 2643 119 8 16 chr6 120545733 120546111 -61869131 + THE1C LTR MaLR 1 375 0 1484 239 149 0 chr6 120546233 120546622 -61868620 - MLT1J2 LTR MaLR -3 447 1 447 274 16 0 chr6 120547202 120547326 -61867916 - L1MC/D LINE L1 -2033 5775 5650 199 202 24 0 chr6 120547413 120547497 -61867745 + (TA)n Simple_repeat Simple_repeat 2 87 0 2701 7 0 0 chr6 120547773 120548062 -61867180 + AluY SINE Alu 22 310 -1 321 311 53 29 chr6 120548244 120548450 -61866792 + L1ME LINE L1 4075 4285 -1861 23 0 0 0 chr6 120548709 120548732 -61866510 + AT_rich Low_complexity Low_complexity 1 23 0 864 261 65 45 chr6 120548844 120549100 -61866142 - LTR16C LTR ERVL -2 489 223 2166 161 186 18 chr6 120549100 120549542 -61865700 - MLT2B1 LTR ERVL 0 520 5 864 261 65 45 chr6 120549542 120549622 -61865620 - LTR16C LTR ERVL -268 223 146 422 268 108 16 chr6 120549791 120549985 -61865257 + L1ME LINE L1 4485 4696 -1450 22 70 0 0 chr6 120550256 120550299 -61864943 + AT_rich Low_complexity Low_complexity 1 43 0 1317 312 86 24 chr6 120550574 120551299 -61863943 - L2 LINE L2 -3 3310 2507 6738 96 6 2 chr6 120551299 120552454 -61862788 + L1PA13 LINE L1 4990 6160 -3 1317 312 86 24 chr6 120552454 120552721 -61862521 - L2 LINE L2 -806 2507 2258 373 293 38 25 chr6 120553088 120553245 -61861997 + L1ME LINE L1 5617 5775 -346 24 53 0 0 chr6 120554843 120554881 -61860361 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 120555507 120555528 -61859714 + AT_rich Low_complexity Low_complexity 1 21 0 203 337 88 47 chr6 120555585 120555778 -61859464 + L2 LINE L2 1594 1794 -1520 1251 84 0 0 chr6 120555919 120556074 -61859168 - AluSx SINE Alu -157 155 1 331 97 81 32 chr6 120556085 120556147 -61859095 - L1ME1 LINE L1 -246 5920 5856 * 448 168 1 0 chr6 120556143 120556226 -61859016 - L1PA15 LINE L1 -78 6085 6002 270 277 59 30 chr6 120556995 120557096 -61858146 - MIR SINE MIR -16 246 143 279 322 208 16 chr6 120557166 120557196 -61858046 - MIR SINE MIR -1 261 238 2346 92 3 0 chr6 120557196 120557499 -61857743 - AluSg SINE Alu -6 304 1 279 322 208 16 chr6 120557499 120557651 -61857591 - MIR SINE MIR -24 238 44 2224 185 61 18 chr6 120557774 120558267 -61856975 - L1MB7 LINE L1 -9 6175 5662 364 284 65 13 chr6 120558353 120558508 -61856734 - MER103 DNA DNA -2 164 2 253 250 0 31 chr6 120558895 120558959 -61856283 + L2 LINE L2 3186 3247 -25 270 345 35 17 chr6 120559006 120559122 -61856120 - MIR SINE MIR -61 147 30 1680 168 30 17 chr6 120559855 120560153 -61855089 - AluJb SINE Alu -10 302 1 288 53 0 0 chr6 120560850 120560888 -61854354 + (T)n Simple_repeat Simple_repeat 1 38 0 267 241 167 19 chr6 120561438 120561546 -61853696 + MIR SINE MIR 81 204 -58 2245 92 3 3 chr6 120561665 120561960 -61853282 - AluSp SINE Alu -18 295 1 678 247 29 18 chr6 120563236 120563406 -61851836 - MER5B DNA MER1_type 0 178 7 224 264 0 0 chr6 120563477 120563530 -61851712 + L2 LINE L2 2596 2648 -666 2456 155 15 10 chr6 120563580 120563959 -61851283 - LTR32 LTR ERVL 0 471 88 1583 151 74 44 chr6 120563959 120564257 -61850985 - AluJb SINE Alu -5 307 1 2456 155 15 10 chr6 120564257 120564270 -61850972 - LTR32 LTR ERVL -383 88 77 529 284 132 0 chr6 120564381 120564571 -61850671 - MIR SINE MIR -2 260 46 399 343 88 56 chr6 120564609 120565289 -61849953 + HAL1 LINE L1 10 711 -1796 1868 215 71 49 chr6 120565368 120565862 -61849380 - MLT1D LTR MaLR 0 505 1 1366 166 65 55 chr6 120565887 120566212 -61849030 + L1MC3 LINE L1 7458 7785 0 23 0 0 0 chr6 120566335 120566358 -61848884 + AT_rich Low_complexity Low_complexity 1 23 0 504 356 47 64 chr6 120566366 120566709 -61848533 + L2 LINE L2 2934 3270 -2 928 26 43 0 chr6 120567117 120567234 -61848008 - L1PA4 LINE L1 -1 6154 6033 43572 34 23 1 chr6 120567334 120573204 -61842038 - L1PA4 LINE L1 -154 6001 4 221 264 90 92 chr6 120573387 120573755 -61841487 + L2 LINE L2 2830 3196 -117 584 99 0 12 chr6 120573866 120573947 -61841295 + MADE1 DNA Mariner 1 80 0 22 0 0 0 chr6 120575362 120575384 -61839858 + AT_rich Low_complexity Low_complexity 1 22 0 956 323 65 2 chr6 120575585 120575985 -61839257 + MLT1J LTR MaLR 41 465 -46 2012 114 0 18 chr6 120576250 120576531 -61838711 - AluSx SINE Alu -36 276 1 645 259 119 51 chr6 120576679 120577089 -61838153 - L1ME4a LINE L1 -209 5912 5475 4250 135 25 51 chr6 120577121 120577930 -61837312 - L1MB3 LINE L1 -7 6176 5389 198 26 77 0 chr6 120577951 120577990 -61837252 + (TA)n Simple_repeat Simple_repeat 2 43 0 38 22 0 0 chr6 120578003 120578048 -61837194 + AT_rich Low_complexity Low_complexity 1 45 0 468 102 89 0 chr6 120578054 120578370 -61836872 + (TA)n Simple_repeat Simple_repeat 1 344 0 310 292 22 0 chr6 120578390 120578479 -61836763 - L1MC4 LINE L1 -1337 6705 6615 806 159 153 6 chr6 120578514 120578671 -61836571 + MER5A DNA MER1_type 10 189 0 501 126 19 19 chr6 120578972 120579075 -61836167 + CT-rich Low_complexity Low_complexity 1 103 0 1664 172 11 28 chr6 120579089 120579374 -61835868 - AluJo SINE Alu -19 293 14 529 157 33 0 chr6 120579378 120579499 -61835743 + MER113 DNA MER1_type? 117 241 -280 923 239 29 16 chr6 120579681 120579924 -61835318 - MIR SINE MIR -2 260 15 378 0 0 0 chr6 120580304 120580346 -61834896 + (TA)n Simple_repeat Simple_repeat 2 43 0 3341 94 9 18 chr6 120580346 120580791 -61834451 - MLT2A2 LTR ERVL -12 441 1 9822 72 11 6 chr6 120580791 120582030 -61833212 - HERVL-A2 LTR ERVL 0 5654 4410 189 0 0 0 chr6 120582458 120582479 -61832763 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 * 1186 55 24 0 chr6 120582478 120582643 -61832599 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 1259 161 0 0 chr6 120582644 120582830 -61832412 - AluSx SINE Alu -32 278 93 454 85 0 0 chr6 120582833 120582892 -61832350 - HERVL LTR ERVL -762 4892 4834 749 133 0 9 chr6 120582892 120582997 -61832245 - AluSx SINE Alu -208 105 2 1190 236 72 23 chr6 120583475 120583822 -61831420 + MLT1A1 LTR MaLR 2 365 0 26 50 0 0 chr6 120583864 120583904 -61831338 + AT_rich Low_complexity Low_complexity 1 40 0 234 242 125 78 chr6 120584878 120585006 -61830236 + MIR3 SINE MIR 10 143 -65 232 314 0 0 chr6 120586567 120586637 -61828605 + L2 LINE L2 3244 3313 0 270 289 0 22 chr6 120587513 120587603 -61827639 - L2 LINE L2 0 3313 3226 1127 264 64 10 chr6 120588573 120589015 -61826227 - MLT1J LTR MaLR 0 511 6 1026 135 10 101 chr6 120589075 120589199 -61826043 + MER5A DNA MER1_type 2 101 -88 1812 171 3 13 chr6 120589199 120589509 -61825733 + AluJo SINE Alu 1 307 -5 1026 135 10 101 chr6 120589509 120589591 -61825651 + MER5A DNA MER1_type 101 189 0 829 263 38 29 chr6 120590009 120590249 -61824993 + MIR SINE MIR 18 259 -3 2307 100 0 3 chr6 120590689 120590990 -61824252 + AluSx SINE Alu 1 300 -12 306 285 85 46 chr6 120591000 120591130 -61824112 + L2 LINE L2 3137 3271 -1 181 320 0 0 chr6 120592190 120592240 -61823002 - MIR SINE MIR -64 144 95 195 342 111 0 chr6 120592247 120592364 -61822878 + MIR3 SINE MIR 10 139 -69 271 220 76 34 chr6 120592508 120592626 -61822616 - L1MC5 LINE L1 -32 7929 7807 27 73 0 0 chr6 120592656 120592711 -61822531 + AT_rich Low_complexity Low_complexity 1 55 0 229 83 0 28 chr6 120592750 120592786 -61822456 + L1MA8 LINE L1 6164 6198 -93 1334 156 53 0 chr6 120592815 120593058 -61822184 - L1MA8 LINE L1 -75 6216 5961 267 284 0 0 chr6 120593056 120593137 -61822105 - L1MC5 LINE L1 -178 7783 7703 * 337 36 161 36 chr6 120593155 120593211 -61822031 - L1PA6 LINE L1 -7 6147 6085 32062 98 12 20 chr6 120593212 120599595 -61815647 - L1PA7 LINE L1 -35 6434 1 2384 86 0 0 chr6 120599600 120599891 -61815351 - AluSc SINE Alu -16 293 3 1163 233 33 35 chr6 120599898 120600297 -61814945 - L1MC5 LINE L1 -262 7699 7302 207 235 137 39 chr6 120601357 120601459 -61813783 + MIR SINE MIR 53 164 -98 1368 156 0 41 chr6 120601580 120601824 -61813418 + AluJo SINE Alu 1 234 -78 413 203 0 0 chr6 120601939 120602018 -61813224 + AluJo SINE Alu 232 310 -2 220 319 171 29 chr6 120602027 120602237 -61813005 + L2 LINE L2 2737 2976 -338 2436 170 39 24 chr6 120602725 120603190 -61812052 - MLT1F1 LTR MaLR 0 567 96 268 175 188 0 chr6 120603190 120603270 -61811972 - MIR SINE MIR -45 217 123 32 57 0 0 chr6 120603695 120603748 -61811494 + AT_rich Low_complexity Low_complexity 1 53 0 696 230 109 0 chr6 120603791 120603956 -61811286 - MIR SINE MIR -64 198 16 251 311 28 9 chr6 120604705 120604811 -61810431 - MIR3 SINE MIR -11 197 90 1164 263 88 32 chr6 120604822 120605188 -61810054 + LTR33 LTR ERVL 21 420 -101 590 237 23 0 chr6 120605188 120605319 -61809923 + MER94 DNA DNA 1 134 0 1164 263 88 32 chr6 120605319 120605419 -61809823 + LTR33 LTR ERVL 420 513 -8 3697 145 17 28 chr6 120605935 120606576 -61808666 - L1MB4 LINE L1 -1 6179 5546 186 125 304 18 chr6 120607062 120607118 -61808124 + L2 LINE L2 3169 3240 -32 190 286 98 45 chr6 120607256 120607368 -61807874 + MIR SINE MIR 68 185 -77 213 321 0 12 chr6 120607505 120607586 -61807656 + MIR SINE MIR 183 262 0 26 0 0 0 chr6 120607887 120607913 -61807329 + AT_rich Low_complexity Low_complexity 1 26 0 258 56 0 0 chr6 120608180 120608216 -61807026 + (CA)n Simple_repeat Simple_repeat 2 37 0 241 233 0 17 chr6 120608432 120608492 -61806750 - L1ME4a LINE L1 -102 6019 5961 435 293 145 24 chr6 120608540 120608789 -61806453 - L1MC4a LINE L1 -1955 5853 5575 2095 117 3 59 chr6 120608854 120609254 -61805988 - Tigger3(Golem) DNA MER2_type -1 3028 1 273 231 154 13 chr6 120609256 120609334 -61805908 + L2 LINE L2 3182 3270 -2 217 233 0 0 chr6 120609329 120609372 -61805870 - MIR SINE MIR -3 259 217 * 1546 182 58 13 chr6 120609439 120609782 -61805460 - MLT1A1 LTR MaLR 0 365 1 239 273 15 0 chr6 120609787 120609853 -61805389 - MIR SINE MIR -181 81 15 402 398 56 5 chr6 120609886 120610102 -61805140 + L2 LINE L2 3005 3231 -41 3257 132 2 23 chr6 120610542 120611056 -61804186 + L1MB3 LINE L1 5429 5931 -252 753 94 168 74 chr6 120611057 120611206 -61804036 + Tigger1 DNA MER2_type 1 163 -2255 * 1178 139 69 0 chr6 120611187 120611389 -61803853 + Tigger1 DNA MER2_type 2202 2417 -1 1541 128 20 20 chr6 120611389 120611640 -61803602 + L1MB3 LINE L1 5930 6180 -3 289 197 26 40 chr6 120613499 120613575 -61801667 + MLT1K LTR MaLR 189 263 -325 1852 212 136 7 chr6 120613719 120614176 -61801066 + MLT1E2 LTR MaLR 111 626 0 1224 88 0 0 chr6 120614250 120614421 -61800821 + (TTCC)n Simple_repeat Simple_repeat 2 172 0 306 204 20 61 chr6 120614434 120614532 -61800710 + LTR67 LTR ERVL 457 550 -7 259 266 16 0 chr6 120617176 120617240 -61798002 + L2 LINE L2 3204 3268 -4 223 235 12 49 chr6 120617268 120617349 -61797893 + MIR SINE MIR 113 190 -72 225 259 0 0 chr6 120617810 120617864 -61797378 + MIR SINE MIR 188 241 -21 695 263 141 20 chr6 120617913 120618168 -61797074 + L2 LINE L2 3017 3302 -11 851 240 20 20 chr6 120618215 120618415 -61796827 - MER63A DNA MER1_type -10 200 1 786 270 158 14 chr6 120618473 120618931 -61796311 + MLT1G1 LTR MaLR 8 595 0 4625 279 84 35 chr6 120619080 120619599 -61795643 - L2 LINE L2 -780 2534 2042 2224 105 7 0 chr6 120619599 120619893 -61795349 + AluSg SINE Alu 5 300 -10 4625 279 84 35 chr6 120619893 120620739 -61794503 - L2 LINE L2 -1272 2042 1239 306 0 0 0 chr6 120620739 120620773 -61794469 + (TG)n Simple_repeat Simple_repeat 2 35 0 4625 279 84 35 chr6 120620773 120621455 -61793787 - L2 LINE L2 -2075 1239 384 769 263 184 6 chr6 120621675 120622006 -61793236 - MER20B DNA MER1_type -363 420 31 423 238 104 54 chr6 120622023 120622263 -61792979 - L2 LINE L2 -2976 338 87 406 339 123 31 chr6 120622427 120622849 -61792393 - L1ME LINE L1 -305 5816 5356 279 0 0 0 chr6 120622931 120622962 -61792280 + (CA)n Simple_repeat Simple_repeat 1 31 0 1017 123 136 0 chr6 120623102 120623257 -61791985 - MER5B DNA MER1_type 0 178 3 285 253 121 0 chr6 120624386 120624485 -61790757 + L2 LINE L2 3199 3309 -4 21 0 0 0 chr6 120625059 120625080 -61790162 + AT_rich Low_complexity Low_complexity 1 21 0 635 285 69 65 chr6 120625729 120626265 -61788977 + L1MEd LINE L1 318 855 -5264 6145 122 12 0 chr6 120626418 120626621 -61788621 - L1PA16 LINE L1 0 6166 5967 2779 10 0 0 chr6 120626621 120626923 -61788319 - AluYa5 SINE Alu -9 302 1 6145 122 12 0 chr6 120626923 120628259 -61786983 - L1PA16 LINE L1 -199 5967 4627 383 241 101 13 chr6 120628264 120628422 -61786820 + L1MEd LINE L1 865 1036 -5083 210 118 0 0 chr6 120628864 120628898 -61786344 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1509 203 7 0 chr6 120628919 120629039 -61786203 + AluJo SINE Alu 1 119 -193 183 42 0 0 chr6 120629039 120629063 -61786179 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1509 203 7 0 chr6 120629063 120629213 -61786029 + AluJo SINE Alu 119 273 -39 225 212 12 24 chr6 120629240 120629325 -61785917 + GA-rich Low_complexity Low_complexity 6 89 0 1283 255 65 15 chr6 120629579 120630038 -61785204 + L1MC4 LINE L1 6977 7458 -584 397 238 0 0 chr6 120630040 120630120 -61785122 + MER116 DNA Mariner 1 80 0 1785 199 28 87 chr6 120630136 120630734 -61784508 + L1MC4 LINE L1 7479 8041 -1 398 298 106 0 chr6 120631867 120632018 -61783224 + MIR SINE MIR 48 214 -48 207 269 19 37 chr6 120632172 120632280 -61782962 + CT-rich Low_complexity Low_complexity 4 109 0 254 209 291 27 chr6 120633224 120633334 -61781908 + L1ME4a LINE L1 5982 6120 -1 786 253 6 17 chr6 120633419 120633597 -61781645 + MER5B DNA MER1_type 1 176 -2 197 323 50 10 chr6 120633648 120633747 -61781495 + L2 LINE L2 2774 2876 -438 * 218 121 0 0 chr6 120633740 120633773 -61781469 + L2 LINE L2 3250 3282 -31 456 252 54 0 chr6 120634059 120634170 -61781072 + L2 LINE L2 3193 3309 -4 693 165 47 8 chr6 120634388 120634444 -61780798 + MER50 LTR ERV1 1 53 -681 354 45 0 0 chr6 120634444 120634488 -61780754 + (CA)n Simple_repeat Simple_repeat 2 45 0 693 165 47 8 chr6 120634488 120634558 -61780684 + MER50 LTR ERV1 53 132 -602 1696 95 107 0 chr6 120634644 120634897 -61780345 - L1PA14 LINE L1 -1 6160 5881 463 211 23 75 chr6 120634903 120635036 -61780206 + L2 LINE L2 3187 3312 -1 183 80 0 0 chr6 120635832 120635857 -61779385 + (A)n Simple_repeat Simple_repeat 1 25 0 195 42 0 0 chr6 120637105 120637129 -61778113 + (TG)n Simple_repeat Simple_repeat 2 25 0 372 22 0 0 chr6 120638591 120638636 -61776606 + (TG)n Simple_repeat Simple_repeat 2 46 0 2125 125 7 3 chr6 120639026 120639331 -61775911 - AluY SINE Alu -5 306 1 219 341 73 6 chr6 120640174 120640353 -61774889 + L2 LINE L2 1518 1708 -1606 250 317 49 61 chr6 120640382 120640726 -61774516 + L2 LINE L2 1823 2162 -1152 310 197 0 28 chr6 120640761 120640832 -61774410 - MER116 DNA Mariner -10 70 2 434 344 62 0 chr6 120640834 120641078 -61774164 + L2 LINE L2 2227 2485 -829 1996 179 11 14 chr6 120641244 120641608 -61773634 + MLT1A1 LTR MaLR 3 365 0 236 254 119 37 chr6 120642890 120643024 -61772218 + L2 LINE L2 2915 3059 -213 295 325 43 0 chr6 120643057 120643174 -61772068 + MER91A DNA MER1_type 1 122 -74 381 346 96 10 chr6 120643324 120643532 -61771710 - MIR SINE MIR -35 227 2 416 209 52 52 chr6 120645698 120645832 -61769410 - L2 LINE L2 0 3313 3180 2269 114 7 0 chr6 120646286 120646594 -61768648 - AluSg SINE Alu 0 310 1 21 0 0 0 chr6 120647265 120647286 -61767956 + AT_rich Low_complexity Low_complexity 1 21 0 765 218 32 19 chr6 120647816 120648032 -61767210 - L2 LINE L2 0 3313 3095 785 271 68 9 chr6 120648164 120648546 -61766696 - L2 LINE L2 -199 3114 2702 280 206 73 0 chr6 120650751 120650819 -61764423 - MLT1J1 LTR MaLR -16 430 358 389 288 76 0 chr6 120650949 120651077 -61764165 - MLT1J LTR MaLR -284 181 49 2383 151 3 0 chr6 120651077 120651442 -61763800 - MER47A DNA MER2_type 0 366 1 389 288 76 0 chr6 120651442 120651496 -61763746 - MLT1J LTR MaLR -416 49 1 1818 236 43 68 chr6 120651794 120652422 -61762820 + LTR9 LTR ERV1 1 612 0 1656 201 70 14 chr6 120652577 120653020 -61762222 + MER110A LTR ERV1 1 468 0 239 337 40 29 chr6 120655139 120655314 -61759928 - L1MC/D LINE L1 -2030 5778 5602 218 296 141 22 chr6 120655331 120655466 -61759776 - MIR SINE MIR -4 258 108 2035 157 32 83 chr6 120655473 120655907 -61759335 - LTR32 LTR ERVL 0 471 60 187 271 171 21 chr6 120656032 120656172 -61759070 - MIR3 SINE MIR -15 193 33 21 57 0 0 chr6 120656410 120656445 -61758797 + AT_rich Low_complexity Low_complexity 1 35 0 1743 158 21 11 chr6 120656771 120657088 -61758154 + AluJo SINE Alu 1 320 0 762 242 54 0 chr6 120658422 120658608 -61756634 - MIR SINE MIR -8 254 59 5049 153 12 14 chr6 120658643 120659480 -61755762 + L1MB4 LINE L1 5319 6156 -24 312 91 0 0 chr6 120659480 120659524 -61755718 + (TA)n Simple_repeat Simple_repeat 2 45 0 1859 147 65 34 chr6 120659524 120659877 -61755365 - MLT1A1 LTR MaLR -1 364 1 5049 153 12 14 chr6 120659877 120659902 -61755340 + L1MB4 LINE L1 6154 6180 0 1619 129 3 76 chr6 120659906 120660208 -61755034 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr6 120660208 120660230 -61755012 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 207 0 0 0 chr6 120661832 120661855 -61753387 + (TG)n Simple_repeat Simple_repeat 1 23 0 2603 176 60 14 chr6 120662768 120663285 -61751957 + MER67A LTR ERV1 3 543 0 348 292 42 0 chr6 120663613 120663733 -61751509 + L2 LINE L2 2941 3065 -248 202 342 40 48 chr6 120664444 120664672 -61750570 - L2 LINE L2 -219 3053 2828 2277 111 48 23 chr6 120665774 120666126 -61749116 + THE1B LTR MaLR 1 361 -3 1857 129 229 6 chr6 120666430 120666780 -61748462 - MSTA LTR MaLR 0 428 1 245 278 0 0 chr6 120667246 120667300 -61747942 + (CA)n Simple_repeat Simple_repeat 2 55 0 2139 144 12 6 chr6 120667300 120667639 -61747603 - MLT2C1 LTR ERVL -56 341 1 390 165 25 25 chr6 120667911 120668032 -61747210 + GA-rich Low_complexity Low_complexity 1 121 0 533 329 83 8 chr6 120668596 120668836 -61746406 - MIR SINE MIR -2 260 3 756 143 84 0 chr6 120668893 120669012 -61746230 - FLAM_A SINE Alu -4 129 1 517 225 29 58 chr6 120669710 120669883 -61745359 - L2 LINE L2 0 3313 3146 627 259 25 20 chr6 120670134 120670335 -61744907 + LTR37B LTR ERV1 204 405 -63 183 250 31 0 chr6 120670378 120670442 -61744800 - L2 LINE L2 -163 3150 3085 509 192 20 0 chr6 120670456 120670555 -61744687 - FLAM_A SINE Alu -6 136 36 974 238 87 61 chr6 120670630 120671207 -61744035 - L2 LINE L2 -231 3082 2487 841 260 202 3 chr6 120672185 120672497 -61742745 - MLT1K LTR MaLR -20 568 195 947 252 25 4 chr6 120674575 120674817 -61740425 + MIR SINE MIR 14 260 -2 419 271 8 23 chr6 120674845 120674974 -61740268 - MIR SINE MIR -10 252 126 386 355 13 0 chr6 120676296 120676448 -61738794 + MIR SINE MIR 97 250 -12 1022 281 58 6 chr6 120677186 120677546 -61737696 + L2 LINE L2 1784 2162 -1152 1384 171 0 84 chr6 120677557 120677878 -61737364 - L1MA10 LINE L1 -5 6329 6036 611 216 89 25 chr6 120679029 120679339 -61735903 + MER69 DNA AcHobo 19 413 -813 4078 254 81 40 chr6 120679402 120680699 -61734543 - HERV16 LTR ERVL -2040 2956 1607 600 252 0 0 chr6 120680698 120680817 -61734425 - HERV16 LTR ERVL -4327 669 551 * 757 207 81 25 chr6 120680916 120681114 -61734128 + MIR SINE MIR 24 232 -30 210 271 212 25 chr6 120681271 120681389 -61733853 + L2 LINE L2 3133 3272 0 487 264 40 0 chr6 120682246 120682394 -61732848 - MER117 DNA MER1_type -43 154 1 480 303 25 6 chr6 120683463 120683615 -61731627 + MER102b DNA MER1_type 77 231 -110 2028 158 37 26 chr6 120683615 120683994 -61731248 + MLT1B LTR MaLR 2 384 -6 328 179 38 104 chr6 120684003 120684109 -61731133 + MER102b DNA MER1_type 243 341 0 1373 91 0 0 chr6 120685469 120685645 -61729597 - AluY SINE Alu -16 295 120 205 178 0 0 chr6 120685648 120685693 -61729549 + T-rich Low_complexity Low_complexity 1 45 0 437 302 50 6 chr6 120686869 120687028 -61728214 - MIR SINE MIR -6 256 91 1316 132 0 0 chr6 120687340 120687530 -61727712 - L1M3 LINE L1 -556 5778 5589 2316 243 117 23 chr6 120687530 120687695 -61727547 + L2 LINE L2 2145 2293 -1020 1990 205 90 35 chr6 120687695 120688174 -61727068 + MLT1D LTR MaLR 1 505 0 2316 243 117 23 chr6 120688174 120689070 -61726172 + L2 LINE L2 2293 3313 0 611 236 36 0 chr6 120689766 120689906 -61725336 - MIR SINE MIR -32 230 86 1939 174 118 22 chr6 120689907 120690322 -61724920 - MLT1C LTR MaLR -12 455 1 227 194 0 0 chr6 120690331 120690367 -61724875 - MIR SINE MIR -179 83 48 327 229 42 51 chr6 120690683 120690801 -61724441 - L2 LINE L2 -3 3269 3153 256 253 88 33 chr6 120691946 120692037 -61723205 + L2 LINE L2 3213 3308 -5 1757 63 0 0 chr6 120692706 120692911 -61722331 + AluSc SINE Alu 64 268 -41 186 227 23 0 chr6 120694291 120694335 -61720907 - L2 LINE L2 -3 3310 3266 274 250 31 52 chr6 120695278 120695374 -61719868 + MIR SINE MIR 104 197 -65 222 304 29 14 chr6 120695415 120695484 -61719758 + L2 LINE L2 3203 3272 0 637 198 62 25 chr6 120696216 120696378 -61718864 - MIR SINE MIR -32 230 63 250 309 118 0 chr6 120696651 120696761 -61718481 - MER112 DNA MER1_type -131 129 7 495 222 181 7 chr6 120697905 120698049 -61717193 + MER5A DNA MER1_type 13 181 -8 2141 141 0 0 chr6 120698624 120698936 -61716306 + AluSx SINE Alu 1 312 0 730 328 63 11 chr6 120700091 120700362 -61714880 + LTR16A LTR ERVL 166 450 0 195 305 25 94 chr6 120700558 120700761 -61714481 + L2 LINE L2 2868 3056 -216 26 50 0 0 chr6 120700783 120700823 -61714419 + AT_rich Low_complexity Low_complexity 1 40 0 310 276 81 0 chr6 120701044 120701167 -61714075 - MER103 DNA DNA -2 164 32 917 175 12 0 chr6 120701557 120701723 -61713519 - MER5B DNA MER1_type -10 168 1 208 119 0 48 chr6 120702293 120702335 -61712907 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 220 217 117 17 chr6 120702933 120702993 -61712249 - L2 LINE L2 0 3272 3207 325 250 0 0 chr6 120703358 120703430 -61711812 - MLT1K LTR MaLR -6 582 511 492 286 60 37 chr6 120703600 120703817 -61711425 - MIR SINE MIR -1 261 40 859 180 120 0 chr6 120704433 120704616 -61710626 - MER3 DNA MER1_type -4 205 1 378 0 0 0 chr6 120705863 120705905 -61709337 + (TG)n Simple_repeat Simple_repeat 2 43 0 258 177 81 0 chr6 120707578 120707640 -61707602 - MER53 DNA DNA -22 167 101 286 310 137 44 chr6 120707877 120708148 -61707094 - L2 LINE L2 -385 2929 2634 208 229 57 95 chr6 120708124 120708229 -61707013 - MIR SINE MIR -78 130 30 * 6814 130 74 3 chr6 120708983 120709630 -61705612 + Tigger3b DNA MER2_type 1 601 -2427 2191 108 10 10 chr6 120709630 120709936 -61705306 + AluSx SINE Alu 1 306 -6 6814 130 74 3 chr6 120709936 120710420 -61704822 + Tigger3b DNA MER2_type 601 1212 -19 10545 48 73 8 chr6 120710476 120711776 -61703466 + SVA Other Other 1 1385 -1 450 300 139 16 chr6 120712925 120713148 -61702094 + MIR SINE MIR 11 262 0 1366 151 0 24 chr6 120713158 120713370 -61701872 - AluJo SINE Alu -20 292 86 215 266 76 13 chr6 120713924 120714003 -61701239 + L2 LINE L2 3136 3219 -53 7481 48 3 24 chr6 120714856 120715823 -61699419 - L1P LINE L1 -3922 2224 1278 1872 37 0 5 chr6 120715823 120716041 -61699201 + L1PA5 LINE L1 5938 6154 0 1550 98 0 51 chr6 120716663 120716897 -61698345 - AluSq SINE Alu -5 308 87 371 225 152 68 chr6 120718900 120718955 -61696287 - MIR SINE MIR -1 261 212 1947 135 3 3 chr6 120718955 120719277 -61695965 - AluSx SINE Alu 0 322 1 371 225 152 68 chr6 120719277 120719411 -61695831 - MIR SINE MIR -50 212 55 770 274 45 68 chr6 120719469 120719889 -61695353 - L1M4c LINE L1 -4519 2044 1480 1984 116 4 4 chr6 120719909 120720184 -61695058 - AluSx SINE Alu -17 295 21 501 235 41 59 chr6 120720184 120720405 -61694837 - L1MEc LINE L1 -4752 1644 1428 302 311 221 44 chr6 120720573 120721397 -61693845 - L2 LINE L2 -454 2860 1891 22 35 0 0 chr6 120721453 120721482 -61693760 + AT_rich Low_complexity Low_complexity 1 29 0 345 327 162 50 chr6 120721824 120722102 -61693140 - L2 LINE L2 -40 3232 2924 274 287 213 28 chr6 120722211 120722427 -61692815 - L2 LINE L2 -821 2493 2238 399 295 41 0 chr6 120722504 120722626 -61692616 + MIR SINE MIR 17 143 -119 2102 161 85 30 chr6 120722627 120723104 -61692138 - MLT1D LTR MaLR -1 548 1 1833 232 197 42 chr6 120723178 120724257 -61690985 - L2 LINE L2 -72 3241 1954 521 254 143 21 chr6 120725506 120725695 -61689547 + MIR SINE MIR 48 259 -3 289 306 0 18 chr6 120725774 120725885 -61689357 - L2 LINE L2 -1 3312 3204 787 228 91 5 chr6 120726000 120726197 -61689045 + MER58A DNA MER1_type 11 224 0 6055 188 56 38 chr6 120726238 120727652 -61687590 - Charlie1a DNA MER1_type -14 1441 3 702 87 0 0 chr6 120728951 120729054 -61686188 + (CA)n Simple_repeat Simple_repeat 2 104 0 1834 117 33 22 chr6 120733361 120733635 -61681607 + AluSx SINE Alu 1 277 -35 24 32 0 0 chr6 120733999 120734030 -61681212 + AT_rich Low_complexity Low_complexity 1 31 0 34 0 0 0 chr6 120734434 120734468 -61680774 + AT_rich Low_complexity Low_complexity 1 34 0 247 211 18 0 chr6 120735830 120735887 -61679355 + (TAG)n Simple_repeat Simple_repeat 2 59 0 532 229 156 22 chr6 120735922 120736101 -61679141 - MIR SINE MIR -59 203 1 25 51 0 0 chr6 120736399 120736438 -61678804 + AT_rich Low_complexity Low_complexity 1 39 0 1433 169 149 24 chr6 120737172 120737427 -61677815 - AluJo SINE Alu -15 287 1 499 236 132 7 chr6 120737711 120737855 -61677387 - MIR SINE MIR -70 192 31 24 0 0 0 chr6 120738262 120738286 -61676956 + AT_rich Low_complexity Low_complexity 1 24 0 1616 158 64 17 chr6 120738442 120738740 -61676502 - AluJb SINE Alu 0 312 1 1869 149 14 0 chr6 120739965 120740253 -61674989 - AluJo SINE Alu -18 294 3 653 257 84 33 chr6 120741088 120741742 -61673500 + L1MC/D LINE L1 5066 5762 -746 219 69 0 0 chr6 120742810 120742839 -61672403 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 187 282 141 13 chr6 120745024 120745102 -61670140 - L2 LINE L2 -36 3236 3149 180 77 0 0 chr6 120745187 120745213 -61670029 + (A)n Simple_repeat Simple_repeat 1 26 0 2385 57 10 3 chr6 120746708 120747004 -61668238 - AluY SINE Alu -12 299 2 446 276 145 40 chr6 120747822 120748202 -61667040 + MLT1J LTR MaLR 110 615 0 770 249 35 20 chr6 120748344 120748541 -61666701 + MER58A DNA MER1_type 25 224 0 250 148 0 33 chr6 120752656 120752717 -61662525 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 379 196 165 0 chr6 120752878 120752975 -61662267 + L2 LINE L2 3200 3312 -1 584 249 109 63 chr6 120753164 120753578 -61661664 + HAL1b LINE L1 104 536 -812 760 249 21 5 chr6 120753918 120754107 -61661135 - MLT1I LTR MaLR 0 409 218 2857 109 49 38 chr6 120754110 120754642 -61660600 - L1MA7 LINE L1 0 6291 5754 4912 260 73 18 chr6 120754655 120757122 -61658120 + L1MEc LINE L1 373 2932 -3283 2015 189 51 4 chr6 120757127 120757652 -61657590 + L1M4 LINE L1 2650 3199 -2947 447 330 8 8 chr6 120757984 120758102 -61657140 + L2 LINE L2 3155 3272 0 321 266 253 19 chr6 120758577 120758735 -61656507 - MIR SINE MIR -17 245 51 2081 128 3 19 chr6 120758736 120759077 -61656165 + AluJb SINE Alu 1 336 0 2412 67 0 0 chr6 120759662 120759961 -61655281 + AluY SINE Alu 1 299 -12 281 324 0 0 chr6 120761187 120761255 -61653987 - L2 LINE L2 -22 3250 3183 1053 184 0 64 chr6 120761298 120761531 -61653711 + MER20 DNA MER1_type 2 219 0 681 226 127 6 chr6 120761823 120762004 -61653238 - MIR SINE MIR 0 262 60 920 211 6 0 chr6 120762403 120762564 -61652678 + FAM SINE Alu 3 164 -11 198 273 23 34 chr6 120763112 120763200 -61652042 - L2 LINE L2 -3 3269 3183 779 314 35 0 chr6 120763387 120763613 -61651629 + L3 LINE CR1 1335 1568 -9 214 244 0 0 chr6 120764380 120764425 -61650817 - L3b LINE CR1 -9 1574 1530 546 303 21 32 chr6 120765238 120765519 -61649723 + L1MEc LINE L1 492 769 -5627 3661 232 119 29 chr6 120765521 120765589 -61649653 + L1MEc LINE L1 450 511 -5704 2132 143 0 3 chr6 120765589 120765897 -61649345 + AluSx SINE Alu 1 307 -5 3661 232 119 29 chr6 120765897 120766323 -61648919 + L1MEc LINE L1 511 897 -5318 1784 143 86 69 chr6 120766323 120766744 -61648498 + MSTA LTR MaLR 1 428 0 3661 232 119 29 chr6 120766744 120768966 -61646276 + L1MEc LINE L1 897 3398 -2817 7091 40 18 9 chr6 120768966 120769936 -61645306 + L1PA4 LINE L1 5177 6154 -1 3661 232 119 29 chr6 120769936 120769956 -61645286 + L1MEc LINE L1 3398 3415 -2800 220 367 46 18 chr6 120770064 120770173 -61645069 - L3 LINE CR1 -930 647 536 273 283 87 22 chr6 120770802 120770894 -61644348 - L2 LINE L2 -25 3288 3191 223 260 302 24 chr6 120771213 120771382 -61643860 + MIR SINE MIR 33 248 -14 1173 145 60 25 chr6 120771811 120772011 -61643231 - AluJo SINE Alu -21 291 85 199 195 0 24 chr6 120773940 120773981 -61641261 - L3 LINE CR1 -5 1572 1533 1885 167 0 10 chr6 120774419 120774730 -61640512 - AluSx SINE Alu -3 309 2 235 254 127 0 chr6 120775366 120775437 -61639805 + L2 LINE L2 3200 3279 -34 2483 135 2 10 chr6 120776291 120776707 -61638535 + L1MA4 LINE L1 5883 6295 -5 582 243 11 14 chr6 120778443 120778627 -61636615 + MIR SINE MIR 12 240 -22 260 155 14 42 chr6 120778841 120778912 -61636330 + (TA)n Simple_repeat Simple_repeat 2 70 0 191 313 115 0 chr6 120779690 120779786 -61635456 - L2 LINE L2 -294 2978 2872 21 0 0 0 chr6 120779915 120779936 -61635306 + AT_rich Low_complexity Low_complexity 1 21 0 240 340 53 0 chr6 120780568 120780662 -61634580 + L2 LINE L2 3213 3311 -2 24 53 0 0 chr6 120781997 120782035 -61633207 + AT_rich Low_complexity Low_complexity 1 38 0 366 23 0 0 chr6 120782091 120782134 -61633108 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 312 156 0 chr6 120782446 120782523 -61632719 + MIR3 SINE MIR 114 202 -6 1801 122 0 104 chr6 120784149 120784476 -61630766 + AluJb SINE Alu 1 293 -19 21 0 0 0 chr6 120785672 120785693 -61629549 + AT_rich Low_complexity Low_complexity 1 21 0 2308 75 14 0 chr6 120788147 120788442 -61626800 - AluSq SINE Alu -14 299 1 398 271 112 11 chr6 120789060 120789248 -61625994 + L1ME LINE L1 5616 5822 -299 510 296 173 0 chr6 120790123 120790366 -61624876 + L1MC/D LINE L1 5381 5665 -2143 359 270 9 54 chr6 120790380 120790491 -61624751 - MIR SINE MIR -1 261 156 1203 272 82 21 chr6 120790497 120791185 -61624057 - L2 LINE L2 -18 3295 2567 2594 132 24 7 chr6 120791665 120792120 -61623122 + L1MA5 LINE L1 5838 6300 0 23 0 0 0 chr6 120792480 120792503 -61622739 + AT_rich Low_complexity Low_complexity 1 23 0 297 75 0 0 chr6 120792557 120792597 -61622645 + (TG)n Simple_repeat Simple_repeat 1 40 0 585 286 75 51 chr6 120792908 120793163 -61622079 - MIR SINE MIR 0 262 2 21 0 0 0 chr6 120793240 120793261 -61621981 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr6 120793687 120793724 -61621518 + (TG)n Simple_repeat Simple_repeat 2 38 0 207 256 0 0 chr6 120794023 120794066 -61621176 - L2 LINE L2 -13 3259 3217 2019 185 58 2 chr6 120795460 120795925 -61619317 - Charlie4a DNA MER1_type 0 508 18 209 330 0 41 chr6 120797081 120797178 -61618064 - MIR SINE MIR -41 221 129 1413 169 53 63 chr6 120798326 120798705 -61616537 - L1MA10 LINE L1 0 6334 5960 2297 108 0 0 chr6 120799798 120800095 -61615147 + AluSx SINE Alu 3 299 -13 748 199 43 153 chr6 120800651 120801044 -61614198 + Charlie7 DNA MER1_type 2 351 -2261 2245 226 62 61 chr6 120801051 120802115 -61613127 + Charlie7 DNA MER1_type 1482 2549 -63 264 100 0 0 chr6 120802115 120802155 -61613087 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2245 226 62 61 chr6 120802155 120802220 -61613022 + Charlie7 DNA MER1_type 2549 2612 0 240 314 130 49 chr6 120803473 120803658 -61611584 - MIR SINE MIR -13 249 50 605 143 233 0 chr6 120806195 120806328 -61608914 + MIR SINE MIR 63 226 -36 22 0 0 0 chr6 120806552 120806574 -61608668 + AT_rich Low_complexity Low_complexity 1 22 0 2120 130 10 0 chr6 120806671 120806970 -61608272 - AluSx SINE Alu -10 302 1 468 283 17 23 chr6 120807891 120808068 -61607174 - MER5B DNA MER1_type -2 176 1 2345 147 94 112 chr6 120808460 120809085 -61606157 + LTR18B LTR ERVL 1 614 0 2222 103 0 0 chr6 120809398 120809688 -61605554 + AluSx SINE Alu 5 294 -18 1031 185 27 0 chr6 120809773 120809957 -61605285 + MER5A DNA MER1_type 1 189 0 250 222 89 0 chr6 120812208 120812298 -61602944 + L1ME4a LINE L1 6012 6109 -12 64 14 0 0 chr6 120812484 120812555 -61602687 + AT_rich Low_complexity Low_complexity 1 71 0 368 286 126 39 chr6 120812579 120812733 -61602509 + MIR SINE MIR 25 203 -59 2027 125 58 19 chr6 120812733 120813094 -61602148 + THE1C LTR MaLR 1 375 0 368 286 126 39 chr6 120813094 120813145 -61602097 + MIR SINE MIR 203 248 -14 447 35 0 0 chr6 120813589 120813646 -61601596 + (CA)n Simple_repeat Simple_repeat 2 58 0 550 276 71 15 chr6 120814404 120814672 -61600570 - L1ME3A LINE L1 -5 6165 5883 460 260 117 25 chr6 120814704 120815096 -61600146 - L1ME3A LINE L1 -1419 4727 4300 1311 263 47 29 chr6 120815106 120815684 -61599558 - L1ME3A LINE L1 -2057 4089 3502 186 43 0 0 chr6 120817744 120817767 -61597475 + (A)n Simple_repeat Simple_repeat 1 23 0 545 167 20 0 chr6 120820360 120820462 -61594780 - ORSL DNA AcHobo -159 116 13 27 0 0 0 chr6 120820617 120820644 -61594598 + AT_rich Low_complexity Low_complexity 1 27 0 405 54 0 0 chr6 120821927 120821983 -61593259 + (CCAA)n Simple_repeat Simple_repeat 1 56 0 495 319 46 72 chr6 120822420 120822852 -61592390 + L2 LINE L2 1613 2033 -1281 180 374 142 32 chr6 120822879 120823069 -61592173 + L2 LINE L2 1193 1403 -1911 183 266 71 44 chr6 120823754 120823830 -61591412 + L2 LINE L2 1625 1706 -1608 207 0 0 0 chr6 120823830 120823853 -61591389 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 183 266 71 44 chr6 120823853 120823889 -61591353 + L2 LINE L2 1706 1740 -1574 376 298 40 35 chr6 120823912 120824110 -61591132 + L2 LINE L2 1866 2064 -1250 455 360 58 53 chr6 120824332 120824746 -61590496 + L2 LINE L2 2807 3222 -50 1591 273 187 103 chr6 120824894 120825575 -61589667 - L2 LINE L2 0 3313 2691 2329 108 0 3 chr6 120825575 120825889 -61589353 + AluSq SINE Alu 1 313 0 1591 273 187 103 chr6 120825889 120826352 -61588890 - L2 LINE L2 -622 2691 2268 1903 136 3 32 chr6 120826352 120826662 -61588580 - AluJb SINE Alu -6 306 6 344 248 0 53 chr6 120826670 120826803 -61588439 + MER58C DNA MER1_type 60 185 -30 1591 273 187 103 chr6 120826803 120828006 -61587236 - L2 LINE L2 -1051 2262 593 724 175 49 0 chr6 120828263 120828406 -61586836 + MER3 DNA MER1_type 59 208 -1 367 248 103 17 chr6 120828748 120828865 -61586377 + MIR SINE MIR 31 157 -105 282 95 0 0 chr6 120830275 120830317 -61584925 + (CAA)n Simple_repeat Simple_repeat 1 42 0 1097 159 0 0 chr6 120830642 120830805 -61584437 + AluSg/x SINE Alu 135 297 -13 200 250 71 24 chr6 120831123 120831207 -61584035 - L2 LINE L2 -40 3232 3145 486 0 0 0 chr6 120831227 120831281 -61583961 + (CA)n Simple_repeat Simple_repeat 1 54 0 2394 49 31 0 chr6 120831314 120831600 -61583642 + AluY SINE Alu 3 297 -14 2268 121 0 0 chr6 120831729 120832027 -61583215 - AluSq SINE Alu -10 303 6 249 119 0 0 chr6 120832125 120832167 -61583075 + (TG)n Simple_repeat Simple_repeat 1 42 0 685 310 101 57 chr6 120834011 120834443 -61580799 - L2 LINE L2 -1 3271 2774 346 250 82 109 chr6 120834479 120834699 -61580543 + MER112 DNA MER1_type 47 260 0 26 74 0 0 chr6 120835872 120835926 -61579316 + AT_rich Low_complexity Low_complexity 1 54 0 1033 213 103 3 chr6 120837189 120837480 -61577762 - Charlie4a DNA MER1_type -9 499 180 905 217 200 37 chr6 120837509 120837880 -61577362 + MLT1H LTR MaLR 73 382 -167 180 0 0 0 chr6 120837880 120837900 -61577342 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2155 87 7 0 chr6 120837901 120838177 -61577065 - AluSg SINE Alu -32 278 1 905 217 200 37 chr6 120838177 120838213 -61577029 + MLT1H LTR MaLR 381 549 0 374 227 11 0 chr6 120838213 120838301 -61576941 - Charlie4a DNA MER1_type -333 175 87 189 241 0 56 chr6 120839569 120839623 -61575619 - MIR SINE MIR -66 142 92 1757 108 11 11 chr6 120841814 120842091 -61573151 - L1PB1 LINE L1 -1 6150 5874 183 167 0 0 chr6 120842636 120842678 -61572564 + (TG)n Simple_repeat Simple_repeat 1 42 0 209 303 164 8 chr6 120844257 120844379 -61570863 + L2 LINE L2 2211 2351 -963 372 325 58 82 chr6 120844576 120845203 -61570039 + L2 LINE L2 2586 3232 -40 2282 82 0 0 chr6 120845203 120845521 -61569721 + AluSg SINE Alu 1 318 0 372 325 58 82 chr6 120845521 120845554 -61569688 + L2 LINE L2 3232 3264 -8 889 171 41 24 chr6 120845565 120845735 -61569507 + MER2 DNA MER2_type 1 173 -172 2493 97 0 0 chr6 120847055 120847366 -61567876 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr6 120847594 120847618 -61567624 + AT_rich Low_complexity Low_complexity 1 24 0 32 26 0 0 chr6 120848247 120848286 -61566956 + AT_rich Low_complexity Low_complexity 1 39 0 550 238 16 76 chr6 120848862 120849047 -61566195 + MER91A DNA MER1_type 23 196 0 990 239 75 4 chr6 120849539 120849765 -61565477 - MIR SINE MIR -19 243 2 1217 161 158 52 chr6 120849916 120850226 -61565016 + MER2 DNA MER2_type 2 344 0 197 283 0 19 chr6 120852079 120852132 -61563110 + MIR SINE MIR 85 136 -126 1165 14 7 7 chr6 120854258 120854402 -61560840 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 1469 156 78 23 chr6 120854411 120854668 -61560574 - AluSx SINE Alu -41 271 1 614 332 5 20 chr6 120855992 120856191 -61559051 + MER91A DNA MER1_type 1 196 0 384 249 79 69 chr6 120856212 120856401 -61558841 - Charlie8 DNA MER1_type -2183 234 44 258 225 126 9 chr6 120856836 120856947 -61558295 - L1ME4a LINE L1 -38 6083 5960 236 322 81 0 chr6 120857092 120857179 -61558063 - MIR SINE MIR -149 113 20 236 361 0 0 chr6 120857959 120858031 -61557211 - MIR SINE MIR -56 152 81 330 336 0 32 chr6 120859193 120859318 -61555924 + MIR SINE MIR 24 144 -64 284 0 0 27 chr6 120859325 120859362 -61555880 + (CA)n Simple_repeat Simple_repeat 2 37 0 1893 135 20 37 chr6 120859421 120859822 -61555420 - L1MA5 LINE L1 0 6300 5907 650 168 0 0 chr6 120859826 120859933 -61555309 - U6 snRNA snRNA 0 107 1 461 228 83 78 chr6 120860357 120860537 -61554705 + MIR SINE MIR 82 262 0 207 219 67 124 chr6 120861516 120861621 -61553621 - MER5A DNA MER1_type -21 168 70 267 240 100 0 chr6 120861945 120862045 -61553197 + MIR SINE MIR 109 218 -44 264 324 28 42 chr6 120862089 120862231 -61553011 - MIR3 SINE MIR -68 140 1 * 597 323 90 14 chr6 120862231 120862429 -61552813 - MIR SINE MIR -40 222 8 6823 34 2 0 chr6 120863596 120864427 -61550815 + L1PA7 LINE L1 5317 6152 -2 213 39 0 0 chr6 120865829 120865855 -61549387 + (TG)n Simple_repeat Simple_repeat 2 27 0 362 289 12 0 chr6 120867546 120867629 -61547613 + L2 LINE L2 3203 3286 -27 196 209 23 0 chr6 120868538 120868581 -61546661 + MIR SINE MIR 194 237 -25 279 332 117 47 chr6 120868629 120868843 -61546399 - MIR SINE MIR -9 253 25 255 329 25 0 chr6 120868842 120868921 -61546321 - MIR SINE MIR -134 128 48 * 1576 236 51 107 chr6 120868962 120869747 -61545495 + MER21B LTR ERV1 20 760 -103 255 31 0 0 chr6 120870332 120870364 -61544878 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 204 67 0 0 chr6 120870904 120870934 -61544308 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 866 221 21 79 chr6 120871753 120871993 -61543249 - MIR SINE MIR -35 227 2 552 298 84 0 chr6 120872919 120873110 -61542132 + MIR3 SINE MIR 1 207 -1 1871 126 101 16 chr6 120873205 120873398 -61541844 + MSTA LTR MaLR 5 180 -248 186 43 0 0 chr6 120873398 120873421 -61541821 + (TC)n Simple_repeat Simple_repeat 1 23 0 1871 126 101 16 chr6 120873421 120873593 -61541649 + MSTA LTR MaLR 180 401 -27 406 100 14 0 chr6 120873611 120873681 -61541561 - MER41A LTR ERV1 -82 472 402 912 192 134 7 chr6 120874020 120874427 -61540815 + Charlie1 DNA MER1_type 66 2760 -1 414 278 208 0 chr6 120874451 120874595 -61540647 - MER5A DNA MER1_type -12 177 4 460 275 126 103 chr6 120874812 120875209 -61540033 - L2 LINE L2 0 3272 2867 2146 121 7 0 chr6 120875612 120875909 -61539333 - AluSx SINE Alu -13 299 1 202 154 0 26 chr6 120877217 120877256 -61537986 + A-rich Low_complexity Low_complexity 2 39 0 22 0 0 0 chr6 120877597 120877619 -61537623 + AT_rich Low_complexity Low_complexity 1 22 0 930 162 0 0 chr6 120877627 120877769 -61537473 - FLAM_C SINE Alu -1 142 1 583 353 20 12 chr6 120880744 120880993 -61534249 - L3b LINE CR1 -53 1530 1280 289 331 109 11 chr6 120881093 120881268 -61533974 + L3b LINE CR1 1175 1366 -217 240 235 0 0 chr6 120881468 120881519 -61533723 + MER112 DNA MER1_type 182 232 -28 284 153 0 0 chr6 120881688 120881747 -61533495 - L1MC3 LINE L1 0 7785 7727 205 228 35 18 chr6 120881748 120881805 -61533437 - MER5B DNA MER1_type -117 61 4 180 340 0 0 chr6 120881805 120881854 -61533388 + L2 LINE L2 3255 3303 -10 207 219 0 0 chr6 120882943 120882984 -61532258 + (TAA)n Simple_repeat Simple_repeat 1 41 0 391 382 40 9 chr6 120883105 120883333 -61531909 - MIR SINE MIR -19 243 9 284 200 0 14 chr6 120883333 120883403 -61531839 - L1ME LINE L1 -337 5784 5716 205 326 135 0 chr6 120887232 120887321 -61527921 + L2 LINE L2 1338 1438 -1876 2319 100 7 0 chr6 120887919 120888220 -61527022 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr6 120888324 120888353 -61526889 + AT_rich Low_complexity Low_complexity 1 29 0 311 186 93 0 chr6 120888709 120888795 -61526447 - MER97c DNA MER1_type? -166 924 831 2193 194 78 20 chr6 120888861 120889402 -61525840 - MER97b DNA MER1_type? -481 572 1 283 406 63 15 chr6 120889417 120889688 -61525554 + L2 LINE L2 2519 2802 -512 319 306 187 61 chr6 120889719 120890062 -61525180 + L2 LINE L2 2856 3241 -31 406 0 0 0 chr6 120890427 120890472 -61524770 + (TTTA)n Simple_repeat Simple_repeat 4 148 0 2228 92 0 0 chr6 120890472 120890754 -61524488 - AluSg1 SINE Alu -1 326 1 192 125 0 0 chr6 120890837 120890869 -61524373 + (GAAAA)n Simple_repeat Simple_repeat 1 32 0 240 281 93 67 chr6 120891834 120892179 -61523063 - LTR33 LTR ERVL -6 515 162 237 186 0 0 chr6 120893563 120893606 -61521636 + L2 LINE L2 3230 3272 0 381 329 129 14 chr6 120893759 120893969 -61521273 + MIR SINE MIR 23 256 -6 259 374 130 0 chr6 120894094 120894209 -61521033 + L2 LINE L2 3136 3265 -7 338 254 132 35 chr6 120894218 120894332 -61520910 - MIR3 SINE MIR -2 206 82 288 313 0 21 chr6 120896668 120896764 -61518478 + L2 LINE L2 3219 3312 -1 22 35 0 0 chr6 120897530 120897559 -61517683 + AT_rich Low_complexity Low_complexity 1 29 0 391 287 77 28 chr6 120899478 120899659 -61515583 + MIR3 SINE MIR 16 205 -3 206 307 102 55 chr6 120899688 120899815 -61515427 + MIR SINE MIR 80 212 -50 2136 101 11 0 chr6 120901813 120902120 -61513122 + AluSx SINE Alu 1 310 0 21 36 0 0 chr6 120902132 120902160 -61513082 + AT_rich Low_complexity Low_complexity 1 28 0 523 110 138 0 chr6 120902306 120902411 -61512831 + MLT1B LTR MaLR 1 106 -284 2186 122 3 7 chr6 120902424 120902727 -61512515 + AluSx SINE Alu 1 302 -10 299 159 16 32 chr6 120902759 120902822 -61512420 + MLT1B LTR MaLR 327 388 -2 2246 65 28 3 chr6 120903167 120903458 -61511784 + AluY SINE Alu 1 298 -13 4811 84 28 1 chr6 120903652 120904339 -61510903 - L1MA1 LINE L1 -4 6298 5594 225 108 0 0 chr6 120904484 120904521 -61510721 + (TA)n Simple_repeat Simple_repeat 1 37 0 344 206 22 43 chr6 120904526 120904618 -61510624 + L1MC4 LINE L1 6614 6703 -1339 725 219 37 21 chr6 120904912 120905099 -61510143 + MIR SINE MIR 72 261 -1 485 180 90 0 chr6 120905937 120906037 -61509205 - MER5A DNA MER1_type -80 109 1 21 36 0 0 chr6 120906798 120906826 -61508416 + AT_rich Low_complexity Low_complexity 1 28 0 2077 122 20 0 chr6 120907162 120907465 -61507777 + AluSq SINE Alu 1 309 -4 2364 163 39 12 chr6 120907539 120908030 -61507212 + MER41B LTR ERV1 130 474 -12 309 234 153 24 chr6 120908044 120908168 -61507074 + MIR3 SINE MIR 68 207 -1 2313 97 0 7 chr6 120909907 120910206 -61505036 - AluSg1 SINE Alu -12 297 1 540 320 82 0 chr6 120910529 120910735 -61504507 - MIR SINE MIR -19 243 21 1250 245 107 45 chr6 120961233 120961739 -61453503 + MLT1F LTR MaLR 1 537 -5 385 329 95 19 chr6 120961748 120961906 -61453336 - L2 LINE L2 -259 3054 2885 271 331 59 44 chr6 120961976 120962112 -61453130 - L2 LINE L2 -579 2735 2598 2638 32 0 6 chr6 120962674 120962985 -61452257 - AluY SINE Alu -2 309 1 3555 202 47 8 chr6 120965069 120965165 -61450077 - L1MA9 LINE L1 -38 6274 6183 216 0 0 0 chr6 120965165 120965189 -61450053 + (TG)n Simple_repeat Simple_repeat 1 24 0 3555 202 47 8 chr6 120965189 120965960 -61449282 - L1MA9 LINE L1 -129 6183 5373 335 100 0 0 chr6 120966060 120966110 -61449132 - L1MB7 LINE L1 -254 5930 5881 250 192 39 0 chr6 120968084 120968162 -61447080 - MER113 DNA MER1_type? -333 188 108 198 238 63 63 chr6 120968388 120968451 -61446791 - MIR SINE MIR -103 105 43 21 71 0 0 chr6 120968788 120968830 -61446412 + AT_rich Low_complexity Low_complexity 1 42 0 1198 235 101 21 chr6 120969056 120969443 -61445799 - L1ME3A LINE L1 -14 6156 5739 25 31 0 0 chr6 120969848 120969880 -61445362 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr6 120970379 120970402 -61444840 + AT_rich Low_complexity Low_complexity 1 23 0 1782 154 10 42 chr6 120970986 120971292 -61443950 + AluJb SINE Alu 1 296 -16 668 288 42 1 chr6 120972595 120972798 -61442444 + MIR SINE MIR 54 262 0 184 316 76 0 chr6 120973464 120973543 -61441699 - MIR SINE MIR -65 197 113 430 300 35 35 chr6 120974158 120974358 -61440884 + MIR3 SINE MIR 3 202 -6 585 77 0 0 chr6 120975008 120975086 -61440156 - MADE1 DNA Mariner -2 78 1 244 295 200 0 chr6 120976478 120976573 -61438669 + MIR3 SINE MIR 62 175 -33 22 0 0 0 chr6 120976876 120976898 -61438344 + AT_rich Low_complexity Low_complexity 1 22 0 246 174 65 11 chr6 120976965 120977057 -61438185 + (TA)n Simple_repeat Simple_repeat 1 97 0 413 225 7 134 chr6 120977121 120977263 -61437979 - L2 LINE L2 -5 3267 3144 468 274 23 43 chr6 120977276 120977464 -61437778 - L1MC4a LINE L1 -395 5783 5673 2235 105 0 45 chr6 120977735 120978049 -61437193 - AluSg SINE Alu -10 300 1 207 340 106 61 chr6 120978230 120978559 -61436683 + L2 LINE L2 2044 2387 -927 2040 112 30 0 chr6 120978567 120978738 -61436504 - AluSx SINE Alu -8 304 119 249 57 0 0 chr6 120978738 120978773 -61436469 + (TG)n Simple_repeat Simple_repeat 2 36 0 2040 112 30 0 chr6 120978773 120978896 -61436346 - AluSx SINE Alu -193 119 1 366 178 20 20 chr6 120978927 120979028 -61436214 + CT-rich Low_complexity Low_complexity 1 101 0 333 0 0 0 chr6 120979142 120979179 -61436063 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 * 762 60 0 0 chr6 120979178 120979278 -61435964 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 192 389 26 0 chr6 120979278 120979391 -61435851 + L2 LINE L2 2410 2525 -789 879 193 79 82 chr6 120980954 120981296 -61433946 - MLT1H LTR MaLR 0 549 209 3355 77 24 20 chr6 120981779 120982272 -61432970 - L1PA13 LINE L1 -11 6152 5658 1794 128 31 52 chr6 120982638 120982948 -61432294 - AluSx SINE Alu 0 304 1 365 300 57 39 chr6 120983640 120983870 -61431372 + L1ME LINE L1 5545 5778 -392 32 0 0 0 chr6 120984204 120984236 -61431006 + AT_rich Low_complexity Low_complexity 1 32 0 249 159 0 0 chr6 120986347 120986391 -61428851 + (CA)n Simple_repeat Simple_repeat 2 45 0 2262 102 10 0 chr6 120986881 120987186 -61428056 + AluSq SINE Alu 1 308 -5 21 0 0 0 chr6 120987500 120987521 -61427721 + AT_rich Low_complexity Low_complexity 1 21 0 280 369 18 42 chr6 120988274 120988442 -61426800 + L2 LINE L2 2857 3020 -252 253 234 0 0 chr6 120988567 120988614 -61426628 + L2 LINE L2 3267 3313 0 807 182 17 39 chr6 120988958 120989139 -61426103 - MER5B DNA MER1_type 0 178 2 591 219 118 5 chr6 120989214 120989401 -61425841 + L1MD2 LINE L1 5410 5617 -625 2193 165 21 78 chr6 120989404 120989889 -61425353 + LTR32 LTR ERVL 9 465 -6 2201 202 52 4 chr6 120989894 120990398 -61424844 + L1MD2 LINE L1 5621 6148 -211 585 233 42 5 chr6 120990453 120990642 -61424600 + L1MD3 LINE L1 7787 7982 -13 213 234 0 0 chr6 120990763 120990810 -61424432 + (CAATT)n Simple_repeat Simple_repeat 3 49 0 1091 89 0 0 chr6 120991244 120991379 -61423863 - AluSg/x SINE Alu -20 292 158 556 299 94 5 chr6 120992059 120992283 -61422959 - MIR SINE MIR 0 262 19 711 251 81 32 chr6 120992789 120993036 -61422206 + MIR SINE MIR 3 261 -1 253 154 0 0 chr6 120993168 120993207 -61422035 + MER8 DNA MER2_type 1 39 -200 475 191 11 0 chr6 120993230 120993324 -61421918 + MER8 DNA MER2_type 145 239 0 348 343 44 0 chr6 120993946 120994083 -61421159 - MIR SINE MIR 0 262 120 576 200 55 0 chr6 120994096 120994206 -61421036 + FRAM SINE Alu 11 126 -50 270 315 17 22 chr6 120995160 120995338 -61419904 + MER69A DNA AcHobo 1 177 0 603 271 101 0 chr6 120995513 120995701 -61419541 - MIR SINE MIR -46 216 10 1779 104 0 0 chr6 120995783 120996013 -61419229 - AluSg/x SINE Alu -11 301 72 211 267 240 0 chr6 120996159 120996234 -61419008 - MIR SINE MIR -82 126 34 405 374 57 31 chr6 120997391 120997776 -61417466 + L2 LINE L2 1988 2382 -932 1360 210 55 5 chr6 120997916 120998297 -61416945 + L1MD3 LINE L1 7583 7982 -13 248 297 11 11 chr6 120998389 120998480 -61416762 - MER5A DNA MER1_type -52 137 47 2055 133 17 0 chr6 120998645 120998939 -61416303 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr6 120999037 120999059 -61416183 + AT_rich Low_complexity Low_complexity 1 22 0 848 244 101 69 chr6 120999785 121000349 -61414893 - L2 LINE L2 -14 3299 2748 1688 164 3 40 chr6 121000508 121000807 -61414435 + AluJo SINE Alu 11 298 -14 355 359 36 22 chr6 121000811 121001087 -61414155 + L1M4 LINE L1 2676 2955 -3191 1465 144 0 0 chr6 121001091 121001293 -61413949 + AluSq SINE Alu 76 277 -36 260 27 27 0 chr6 121001304 121001341 -61413901 + (TAA)n Simple_repeat Simple_repeat 2 39 0 304 198 0 0 chr6 121001677 121001743 -61413499 - AluJ/FRAM SINE Alu -21 281 229 4169 246 85 17 chr6 121001757 121003017 -61412225 - L2 LINE L2 -607 2707 1362 1887 132 52 19 chr6 121003125 121003488 -61411754 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr6 121004373 121004400 -61410842 + (TC)n Simple_repeat Simple_repeat 2 28 0 240 35 0 0 chr6 121004399 121004428 -61410814 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 403 254 85 25 chr6 121004763 121004881 -61410361 - MER63 DNA MER1_type -311 751 1 1437 206 20 67 chr6 121005181 121005769 -61409473 - MLT1E3 LTR MaLR 0 624 60 469 326 16 8 chr6 121006217 121006462 -61408780 + HAL1 LINE L1 2251 2497 -10 460 275 90 14 chr6 121007513 121007735 -61407507 - L1MA9 LINE L1 -38 6274 6036 2497 208 39 55 chr6 121008262 121008765 -61406477 - L1MB7 LINE L1 -11 6173 5664 320 43 22 0 chr6 121008765 121008811 -61406431 + (TA)n Simple_repeat Simple_repeat 1 47 0 2497 208 39 55 chr6 121008811 121008999 -61406243 - L1MB7 LINE L1 -520 5664 5493 2897 112 12 2 chr6 121008999 121009429 -61405813 + MER57B LTR ERV1 1 434 0 2497 208 39 55 chr6 121009429 121009499 -61405743 - L1MB7 LINE L1 -691 5493 5423 5339 120 10 9 chr6 121009520 121010410 -61404832 - L1PA16 LINE L1 -15 6151 5261 189 171 0 0 chr6 121010857 121010892 -61404350 + CT-rich Low_complexity Low_complexity 2 36 0 2078 100 10 10 chr6 121011165 121011455 -61403787 - AluSc SINE Alu -19 290 1 231 284 0 0 chr6 121011821 121011909 -61403333 + CT-rich Low_complexity Low_complexity 3 90 0 198 186 47 0 chr6 121012215 121012258 -61402984 + L2 LINE L2 3209 3253 -19 1865 183 98 0 chr6 121013881 121014247 -61400995 + MER93a LTR ERV1 1 402 0 239 306 139 0 chr6 121015062 121015170 -61400072 + MER91A DNA MER1_type 49 171 -25 554 235 8 38 chr6 121015497 121015629 -61399613 - MER5A DNA MER1_type -53 136 9 213 39 0 0 chr6 121015698 121015724 -61399518 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1055 176 132 60 chr6 121015728 121015978 -61399264 - AluJo SINE Alu -23 289 22 601 228 99 0 chr6 121016319 121016481 -61398761 + MER5B DNA MER1_type 1 178 0 705 179 0 32 chr6 121016579 121016735 -61398507 - MER58 DNA MER1_type 0 2420 2270 737 202 29 17 chr6 121016736 121016909 -61398333 - MER58 DNA MER1_type -165 176 2 207 191 71 0 chr6 121018364 121018406 -61396836 - L2 LINE L2 -12 3260 3216 248 247 0 0 chr6 121018434 121018523 -61396719 - L1MC4 LINE L1 -1339 6703 6615 384 200 25 0 chr6 121018527 121018647 -61396595 + (TA)n Simple_repeat Simple_repeat 1 123 0 237 240 0 67 chr6 121019528 121019603 -61395639 + MIR SINE MIR 98 167 -95 587 176 71 51 chr6 121019734 121020016 -61395226 - LTR48 LTR ERV1 0 727 503 1296 168 195 9 chr6 121020021 121020354 -61394888 - LTR48 LTR ERV1 -390 397 3 194 333 54 0 chr6 121020615 121020708 -61394534 + L2 LINE L2 1875 1972 -1342 340 225 127 21 chr6 121020854 121020996 -61394246 + L1M LINE L1 5258 5414 -2394 287 337 37 12 chr6 121021775 121021938 -61393304 - MIR SINE MIR -95 167 1 2209 82 0 0 chr6 121022381 121022690 -61392552 - AluY SINE Alu 0 309 1 305 266 84 15 chr6 121022818 121023030 -61392212 + MER93b LTR ERV1 1 222 -212 631 192 0 0 chr6 121023052 121023156 -61392086 + FRAM SINE Alu 40 143 -33 243 0 0 0 chr6 121023156 121023183 -61392059 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 532 162 9 18 chr6 121023207 121023318 -61391924 + MER57A LTR ERV1 294 403 0 2131 71 85 0 chr6 121023488 121023769 -61391473 - AluY SINE Alu -6 305 1 24 53 0 0 chr6 121024518 121024556 -61390686 + AT_rich Low_complexity Low_complexity 1 38 0 5058 111 13 1 chr6 121025666 121026438 -61388804 + L1MA3 LINE L1 5525 6305 0 229 326 39 88 chr6 121026859 121027040 -61388202 - MIR SINE MIR -76 186 15 198 300 62 0 chr6 121027314 121027394 -61387848 + MIR3 SINE MIR 123 207 -1 206 342 125 56 chr6 121027869 121028835 -61386407 + L2 LINE L2 1073 2105 -1209 1037 181 0 12 chr6 121028908 121029079 -61386163 - AluJb SINE Alu -10 302 134 2182 106 0 39 chr6 121029079 121029390 -61385852 - AluSx SINE Alu -13 299 1 357 250 83 28 chr6 121029390 121029534 -61385708 + MIR SINE MIR 62 213 -49 229 114 71 14 chr6 121029916 121029986 -61385256 + (TA)n Simple_repeat Simple_repeat 1 74 0 188 132 0 26 chr6 121030586 121030624 -61384618 + (TA)n Simple_repeat Simple_repeat 1 37 0 515 78 39 0 chr6 121030701 121030778 -61384464 + MADE1 DNA Mariner 1 80 0 466 344 0 0 chr6 121030947 121031107 -61384135 - MIR SINE MIR -83 179 20 182 244 24 0 chr6 121032506 121032547 -61382695 - MIR SINE MIR -66 196 155 293 190 13 38 chr6 121032550 121032629 -61382613 + MER116 DNA Mariner 1 77 -3 793 206 7 0 chr6 121032648 121032824 -61382418 - FRAM SINE Alu 0 176 1 350 265 81 22 chr6 121032824 121032960 -61382282 - MIR SINE MIR -114 148 5 493 257 9 0 chr6 121034034 121034143 -61381099 - MER81 DNA DNA 0 114 5 5758 144 25 33 chr6 121034155 121035235 -61380007 - MER11C LTR ERVK 0 1071 1 269 250 131 24 chr6 121036808 121036976 -61378266 + L1MC4 LINE L1 7766 7951 -91 2134 115 0 0 chr6 121038902 121039218 -61376024 + AluSg SINE Alu 1 316 0 451 196 27 0 chr6 121039223 121039335 -61375907 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 546 231 96 0 chr6 121039628 121039784 -61375458 - MIR SINE MIR -18 244 74 454 295 58 58 chr6 121040278 121040337 -61374905 - L2 LINE L2 -2 3270 3212 812 240 41 0 chr6 121040337 121040508 -61374734 - MER45A DNA AcHobo 0 178 1 454 295 58 58 chr6 121040508 121040604 -61374638 - L2 LINE L2 -59 3213 3115 542 257 175 32 chr6 121040853 121041195 -61374047 - L2 LINE L2 -383 2931 2541 23 0 0 0 chr6 121043293 121043316 -61371926 + AT_rich Low_complexity Low_complexity 1 23 0 775 351 82 24 chr6 121044196 121044852 -61370390 + L2 LINE L2 2046 2739 -575 2123 128 26 0 chr6 121044941 121045245 -61369997 - AluSx SINE Alu 0 312 1 2742 23 0 7 chr6 121045723 121046028 -61369214 - AluY SINE Alu -8 303 1 216 320 0 0 chr6 121046306 121046356 -61368886 + L2 LINE L2 3207 3256 -16 2099 120 0 7 chr6 121046699 121046990 -61368252 + AluSx SINE Alu 4 292 -20 1760 147 38 14 chr6 121047076 121047369 -61367873 + AluJo SINE Alu 3 302 -10 418 185 19 46 chr6 121047521 121047629 -61367613 - MLT1J LTR MaLR -12 499 395 381 286 43 21 chr6 121047678 121047818 -61367424 + MIR SINE MIR 118 260 -2 210 354 57 63 chr6 121047871 121048046 -61367196 - L2 LINE L2 -151 3121 2948 36 0 0 0 chr6 121049541 121049577 -61365665 + AT_rich Low_complexity Low_complexity 1 36 0 1598 185 46 13 chr6 121050209 121050582 -61364660 + Charlie1 DNA MER1_type 2343 2727 -34 3947 172 18 70 chr6 121050583 121050610 -61364632 + L1MA7 LINE L1 5441 5468 -823 2155 111 0 0 chr6 121050610 121050899 -61364343 - AluSg1 SINE Alu -5 304 16 3947 172 18 70 chr6 121050899 121051709 -61363533 + L1MA7 LINE L1 5468 6234 -57 380 135 95 0 chr6 121051729 121051803 -61363439 + L1MC4 LINE L1 7961 8041 -1 954 124 14 0 chr6 121051951 121052096 -61363146 + AluSg/x SINE Alu 157 303 -9 344 211 40 0 chr6 121052387 121052463 -61362779 + MER94 DNA DNA 8 86 -48 2020 90 54 4 chr6 121053308 121053587 -61361655 + AluSg SINE Alu 1 293 -17 285 333 29 0 chr6 121053934 121054036 -61361206 + L2 LINE L2 3200 3304 -9 238 200 18 45 chr6 121055080 121055190 -61360052 + (TTTA)n Simple_repeat Simple_repeat 1 107 0 5607 152 26 12 chr6 121057300 121058617 -61356625 + L1P4 LINE L1 4286 5614 -554 291 54 0 0 chr6 121058625 121058662 -61356580 + (A)n Simple_repeat Simple_repeat 1 37 0 327 301 56 21 chr6 121059115 121059175 -61356067 + MLT1J LTR MaLR 358 414 -97 501 157 11 0 chr6 121059175 121059264 -61355978 + L1PA13 LINE L1 6070 6159 -4 824 150 46 17 chr6 121059264 121059416 -61355826 + L1MA6 LINE L1 6123 6300 0 327 301 56 21 chr6 121059416 121059497 -61355745 + MLT1J LTR MaLR 413 505 -6 718 179 161 39 chr6 121059707 121059992 -61355250 - L1MC5 LINE L1 -36 7925 7606 21 36 0 0 chr6 121060975 121061003 -61354239 + AT_rich Low_complexity Low_complexity 1 28 0 1774 77 13 8 chr6 121061093 121061328 -61353914 - AluY SINE Alu -49 262 27 249 35 0 0 chr6 121062281 121062310 -61352932 + LTR6A LTR ERV1 73 101 -463 2131 129 3 13 chr6 121062952 121063262 -61351980 - AluSx SINE Alu -5 307 1 4251 143 6 8 chr6 121063827 121063960 -61351282 - MER41B LTR ERV1 0 635 503 2449 60 3 25 chr6 121063960 121064275 -61350967 + AluY SINE Alu 1 308 -3 4251 143 6 8 chr6 121064275 121064775 -61350467 - MER41B LTR ERV1 -132 503 3 2657 162 63 86 chr6 121064994 121065561 -61349681 + MLT2B3 LTR ERVL 1 554 0 581 274 18 0 chr6 121066605 121066773 -61348469 - MIR SINE MIR -1 261 91 509 221 12 128 chr6 121068609 121068781 -61346461 - MER63 DNA MER1_type -284 778 1 5529 148 21 31 chr6 121069567 121069637 -61345605 + L1MA4A LINE L1 5296 5365 -938 1878 148 0 17 chr6 121069637 121069960 -61345282 + AluJo SINE Alu 1 318 0 5529 148 21 31 chr6 121069960 121070905 -61344337 + L1MA4A LINE L1 5365 6303 0 488 254 74 18 chr6 121073144 121073361 -61341881 - L1MC5 LINE L1 -208 7753 7525 25 0 0 0 chr6 121073778 121073803 -61341439 + AT_rich Low_complexity Low_complexity 1 25 0 399 297 95 36 chr6 121074522 121074836 -61340406 + L1ME LINE L1 5255 5602 -568 24 0 0 0 chr6 121076485 121076509 -61338733 + AT_rich Low_complexity Low_complexity 1 24 0 296 281 61 18 chr6 121076819 121076933 -61338309 + L1MC4a LINE L1 6683 6801 -1007 324 70 0 0 chr6 121077671 121077714 -61337528 + (TG)n Simple_repeat Simple_repeat 1 43 0 351 280 42 53 chr6 121079610 121079799 -61335443 - MER5A DNA MER1_type 0 189 3 721 300 83 6 chr6 121080018 121080355 -61334887 + L2 LINE L2 2899 3261 -52 594 320 57 11 chr6 121080738 121081214 -61334028 - LTR33A LTR ERVL -2 521 3 24 0 0 0 chr6 121081459 121081483 -61333759 + AT_rich Low_complexity Low_complexity 1 24 0 752 109 0 0 chr6 121082488 121082589 -61332653 - LTR12 LTR ERV1 -133 581 481 329 216 54 17 chr6 121082590 121082709 -61332533 - LTR30 LTR ERV1 -79 677 552 946 132 6 104 chr6 121082709 121082891 -61332351 - LTR12 LTR ERV1 -457 257 94 2319 35 43 3 chr6 121083825 121084107 -61331135 - AluY SINE Alu -18 293 1 298 237 88 18 chr6 121084243 121084357 -61330885 - L1ME3A LINE L1 0 6170 6049 1637 196 74 49 chr6 121084362 121084807 -61330435 - L1ME3A LINE L1 -237 5933 5478 685 272 127 3 chr6 121084863 121085234 -61330008 - L1ME3A LINE L1 -805 5341 4925 1336 166 58 42 chr6 121086219 121086532 -61328710 - L1MA9 LINE L1 0 6312 5995 825 178 46 0 chr6 121086536 121086688 -61328554 + L1MA9 LINE L1 5842 6000 -312 188 75 0 75 chr6 121086779 121086819 -61328423 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 847 171 7 41 chr6 121086824 121086970 -61328272 - AluJb SINE Alu -42 270 130 2324 196 78 18 chr6 121087709 121088628 -61326614 - MER45B DNA AcHobo -2 1038 1 341 212 106 71 chr6 121088813 121088926 -61326316 + MER5B DNA MER1_type 61 177 -1 346 232 53 42 chr6 121088951 121089046 -61326196 + MER5A DNA MER1_type 9 104 -85 1207 213 65 63 chr6 121089227 121089734 -61325508 + Charlie2 DNA MER1_type 2269 2776 -86 537 189 142 0 chr6 121089744 121089892 -61325350 + Charlie2 DNA MER1_type 2694 2862 0 572 280 100 27 chr6 121090426 121090797 -61324445 - HAL1 LINE L1 -5 2502 2105 402 273 0 91 chr6 121090796 121090893 -61324349 - HAL1 LINE L1 -917 1590 1514 * 11944 124 27 5 chr6 121090893 121093391 -61321851 + L1PA10 LINE L1 3649 6168 0 402 273 0 91 chr6 121093391 121093469 -61321773 - HAL1 LINE L1 -993 1514 1431 345 319 62 6 chr6 121093472 121093632 -61321610 - HAL1 LINE L1 -1291 1216 1048 870 253 116 0 chr6 121093681 121093906 -61321336 + MIR SINE MIR 2 252 -10 519 291 109 78 chr6 121093913 121094768 -61320474 - HAL1 LINE L1 -1511 996 92 274 229 25 76 chr6 121095721 121095839 -61319403 - MLT1K LTR MaLR -285 303 192 203 186 0 34 chr6 121098596 121098655 -61316587 + GA-rich Low_complexity Low_complexity 2 58 0 22 0 0 0 chr6 121098691 121098713 -61316529 + AT_rich Low_complexity Low_complexity 1 22 0 3549 178 27 21 chr6 121099806 121100535 -61314707 - L1MB5 LINE L1 0 6174 5441 3627 138 74 10 chr6 121100560 121101781 -61313461 - L1MA5 LINE L1 0 6300 4950 457 276 88 57 chr6 121101781 121102009 -61313233 + L2 LINE L2 2435 2669 -645 796 288 135 25 chr6 121102070 121102507 -61312735 + L2 LINE L2 2829 3313 0 504 305 97 13 chr6 121103205 121103431 -61311811 + MIR SINE MIR 18 262 0 1270 95 0 6 chr6 121103810 121103978 -61311264 - AluY SINE Alu -144 167 1 541 213 48 20 chr6 121104038 121104194 -61311048 + L1ME4a LINE L1 1204 6118 -3 1365 176 170 3 chr6 121104523 121104829 -61310413 + MLT2C1 LTR ERVL 1 357 -40 2487 198 31 48 chr6 121104960 121105605 -61309637 - LTR27 LTR ERV1 0 636 3 662 173 8 0 chr6 121106289 121106416 -61308826 - L1MB2 LINE L1 0 6171 6044 1498 203 62 48 chr6 121106534 121106953 -61308289 - MLT1D LTR MaLR 0 505 81 8477 156 12 19 chr6 121106957 121109350 -61305892 - L1PA12 LINE L1 0 6168 3774 207 0 0 0 chr6 121110867 121110890 -61304352 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 281 284 28 18 chr6 121111300 121111409 -61303833 + MIR SINE MIR 2 111 -151 312 300 0 0 chr6 121111675 121111755 -61303487 - MER63 DNA MER1_type -20 1041 962 * 443 172 182 0 chr6 121111748 121111847 -61303395 - MER63 DNA MER1_type -93 743 1 365 298 44 0 chr6 121112401 121112515 -61302727 - L3b LINE CR1 -187 1396 1278 335 263 120 34 chr6 121113209 121113397 -61301845 + MIR SINE MIR 4 207 -55 427 229 48 0 chr6 121113407 121113512 -61301730 + MER94 DNA DNA 4 113 -21 1225 148 55 52 chr6 121113946 121114236 -61301006 + MER33 DNA MER1_type 34 324 0 2172 95 3 0 chr6 121114376 121114671 -61300571 + AluY SINE Alu 11 306 -5 366 23 0 0 chr6 121115426 121115469 -61299773 + (CA)n Simple_repeat Simple_repeat 2 44 0 300 206 0 0 chr6 121115600 121115663 -61299579 + L1MA5 LINE L1 6238 6300 0 365 356 68 0 chr6 121115758 121115890 -61299352 + L1MC4a LINE L1 6167 6307 -1501 261 163 0 0 chr6 121115929 121115972 -61299270 + L1MC4a LINE L1 6536 6578 -1230 2417 221 125 84 chr6 121116017 121117290 -61297952 + L1MC4 LINE L1 6716 8040 -2 2186 117 10 3 chr6 121117350 121117659 -61297583 + AluSx SINE Alu 1 311 -1 196 239 0 22 chr6 121117781 121117827 -61297415 + MIR SINE MIR 119 163 -99 319 233 54 54 chr6 121117828 121117957 -61297285 + MLT1J LTR MaLR 1 129 -382 280 314 39 10 chr6 121118308 121118410 -61296832 + MIR SINE MIR 158 262 0 30 59 0 0 chr6 121118864 121118915 -61296327 + AT_rich Low_complexity Low_complexity 1 51 0 524 271 46 46 chr6 121119476 121119694 -61295548 - LTR33 LTR ERVL 0 521 304 538 278 86 0 chr6 121119758 121119920 -61295322 - LTR33 LTR ERVL -345 176 1 264 346 33 3 chr6 121119920 121120028 -61295214 - MIR SINE MIR -80 128 20 1689 167 3 24 chr6 121121131 121121418 -61293824 + AluJo SINE Alu 1 281 -31 514 278 263 5 chr6 121121642 121121836 -61293406 + MIR SINE MIR 4 247 -15 390 254 26 44 chr6 121122109 121122237 -61293005 + MIR SINE MIR 30 145 -63 1012 55 103 14 chr6 121123187 121123333 -61291909 - L1PA5 LINE L1 -2 6152 5994 809 175 7 7 chr6 121123613 121123756 -61291486 + FRAM SINE Alu 27 169 -7 27 29 0 0 chr6 121123781 121123815 -61291427 + AT_rich Low_complexity Low_complexity 1 34 0 1193 85 58 5 chr6 121123873 121124061 -61291181 - L1MA3 LINE L1 -9 6296 6099 11769 180 19 3 chr6 121124061 121126399 -61288843 - L1 LINE L1 -981 6584 4210 484 223 71 0 chr6 121126400 121126512 -61288730 - AluSq/x SINE Alu -192 120 1 1122 102 11 0 chr6 121126514 121126690 -61288552 - L1M1 LINE L1 -5038 2527 2350 28373 131 19 62 chr6 121126703 121132117 -61283125 + L1PA7 LINE L1 12 5195 -951 3313 36 0 0 chr6 121132117 121132510 -61282732 + LTR10C LTR ERV1 1 393 -198 4947 75 2 0 chr6 121132510 121133150 -61282092 + L1PA7 LINE L1 5500 6140 -14 1728 210 50 13 chr6 121134151 121134547 -61280695 + MLT1C LTR MaLR 4 414 -53 5112 123 7 8 chr6 121134557 121135312 -61279930 - L1 LINE L1 -5205 2360 1607 21 36 0 0 chr6 121135362 121135390 -61279852 + AT_rich Low_complexity Low_complexity 1 28 0 205 264 207 16 chr6 121135729 121135850 -61279392 - MIR SINE MIR -117 145 2 377 323 7 0 chr6 121136096 121136251 -61278991 + L1MC4a LINE L1 5713 5868 -1940 2856 216 44 30 chr6 121136514 121137238 -61278004 + L1ME1 LINE L1 5429 6162 -4 246 196 0 0 chr6 121137352 121137398 -61277844 + L1M1 LINE L1 1607 1652 -5913 263 368 108 5 chr6 121139031 121139235 -61276007 - MIR SINE MIR -4 258 34 570 293 157 10 chr6 121139342 121139540 -61275702 + MIR SINE MIR 3 229 -33 2111 269 86 33 chr6 121139948 121140913 -61274329 + L2 LINE L2 2092 3169 -144 816 239 133 20 chr6 121140913 121141214 -61274028 - MER46C DNA MER2_type -3 335 1 2111 269 86 33 chr6 121141214 121141368 -61273874 + L2 LINE L2 3169 3313 0 316 322 68 90 chr6 121142104 121142458 -61272784 - L2 LINE L2 -339 2975 2630 223 191 0 21 chr6 121143693 121143740 -61271502 + GA-rich Low_complexity Low_complexity 2 47 0 312 188 0 58 chr6 121144098 121144167 -61271075 + MIR3 SINE MIR 133 197 -11 1690 188 3 10 chr6 121146216 121146519 -61268723 + AluJo SINE Alu 1 301 -11 26 0 0 0 chr6 121147012 121147038 -61268204 + AT_rich Low_complexity Low_complexity 1 26 0 205 271 71 14 chr6 121147723 121147793 -61267449 - MER5A DNA MER1_type -78 111 38 230 116 23 0 chr6 121149522 121149565 -61265677 + A-rich Low_complexity Low_complexity 3 46 0 1423 144 107 0 chr6 121149984 121150227 -61265015 + AluJb SINE Alu 5 273 -39 1995 141 3 3 chr6 121150354 121150652 -61264590 - AluSx SINE Alu -14 298 1 301 297 0 0 chr6 121150678 121150779 -61264463 - L1MC5 LINE L1 -48 7913 7813 326 225 18 63 chr6 121150983 121151094 -61264148 - L1ME4a LINE L1 -152 6467 6362 897 223 154 4 chr6 121151121 121151394 -61263848 - MER5C DNA MER1_type -4 320 7 226 256 99 25 chr6 121151415 121151536 -61263706 - L1ME4a LINE L1 -1993 6313 6184 285 219 27 0 chr6 121151611 121151684 -61263558 - Charlie2 DNA MER1_type 0 2862 2788 4523 191 68 60 chr6 121151730 121152281 -61262961 + L1MC3 LINE L1 6587 7132 -653 236 226 0 0 chr6 121152281 121152334 -61262908 + MLT1F1 LTR MaLR 73 125 -442 4523 191 68 60 chr6 121152334 121152613 -61262629 + L1MC3 LINE L1 7132 7407 -378 222 37 0 0 chr6 121152613 121152640 -61262602 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4523 191 68 60 chr6 121152640 121152945 -61262297 + L1MC3 LINE L1 7407 7785 0 4006 255 45 68 chr6 121153014 121154503 -61260739 - L1MEc LINE L1 -1288 5356 3834 1485 221 14 0 chr6 121154503 121154793 -61260449 - AluJb SINE Alu -18 294 1 4006 255 45 68 chr6 121154793 121155920 -61259322 - L1MEc LINE L1 -2810 3834 2923 2086 155 0 6 chr6 121155920 121156281 -61258961 - L1MA5 LINE L1 0 6300 5942 4006 255 45 68 chr6 121156281 121156659 -61258583 - L1MEc LINE L1 -3721 2923 2538 1012 158 31 47 chr6 121156660 121156914 -61258328 - L1MB7 LINE L1 -1 6183 5934 1874 233 15 137 chr6 121156916 121157837 -61257405 - L1 LINE L1 -2047 4099 3291 195 186 0 0 chr6 121158241 121158284 -61256958 + (TG)n Simple_repeat Simple_repeat 1 43 0 282 335 22 28 chr6 121158320 121158499 -61256743 - L1MEc LINE L1 -6352 190 13 624 303 106 46 chr6 121158511 121159267 -61255975 - L1ME4a LINE L1 -5 6116 5316 758 272 107 0 chr6 121159427 121159651 -61255591 + MIR SINE MIR 15 262 0 429 271 76 21 chr6 121160080 121160224 -61255018 + MIR SINE MIR 110 261 -1 513 284 177 48 chr6 121160276 121160688 -61254554 + MLT1H LTR MaLR 85 549 0 195 42 0 0 chr6 121162812 121162836 -61252406 + (CATA)n Simple_repeat Simple_repeat 4 27 0 631 280 82 12 chr6 121163253 121163496 -61251746 + MIR SINE MIR 3 262 0 395 327 71 9 chr6 121163807 121164018 -61251224 + LTR33A LTR ERVL 59 282 -241 331 250 87 63 chr6 121164082 121164334 -61250908 + LTR33A LTR ERVL 263 520 -3 1642 213 58 6 chr6 121164802 121165149 -61250093 + MLT1A1 LTR MaLR 1 365 0 2215 184 73 2 chr6 121166087 121166550 -61248692 - L1MC2 LINE L1 -8 6336 5841 659 192 145 37 chr6 121167010 121167224 -61248018 + MLT1B LTR MaLR 1 237 -153 1291 180 20 28 chr6 121167226 121167481 -61247761 - MER57A-int LTR ERV1 -5 7532 7280 615 147 22 66 chr6 121167492 121167628 -61247614 - LTR54B LTR ERV1 -366 132 3 2703 189 16 10 chr6 121167652 121168155 -61247087 - MER57A-int LTR ERV1 -396 7141 6636 1056 115 0 82 chr6 121168155 121168363 -61246879 - MER57A-int LTR ERV1 -1743 5794 5604 2631 157 0 5 chr6 121168405 121168837 -61246405 - MER57A-int LTR ERV1 -1936 5601 5172 739 189 54 39 chr6 121168841 121169297 -61245945 - MER57A-int LTR ERV1 -1997 2883 1707 2631 121 0 0 chr6 121169304 121169668 -61245574 + THE1B LTR MaLR 1 364 0 467 209 61 0 chr6 121169937 121170052 -61245190 - MER57A-int LTR ERV1 -2991 3340 3219 918 115 112 74 chr6 121170158 121170373 -61244869 + MSTA LTR MaLR 154 428 0 2558 213 12 8 chr6 121170373 121170862 -61244380 - MER57A-int LTR ERV1 -7045 492 2 1889 159 102 27 chr6 121170868 121171239 -61244003 - MER57A LTR ERV1 -4 399 1 724 175 6 6 chr6 121171363 121171529 -61243713 + CT-rich Low_complexity Low_complexity 4 169 0 294 192 0 0 chr6 121171780 121171832 -61243410 - MLT1I LTR MaLR 0 409 358 265 367 44 11 chr6 121171975 121172155 -61243087 - MLT1I LTR MaLR -184 225 40 2121 156 19 24 chr6 121172427 121172799 -61242443 + MER57A LTR ERV1 1 370 -33 7596 28 0 3 chr6 121172819 121173862 -61241380 - L1PA3 LINE L1 0 6155 5114 561 108 0 0 chr6 121173870 121173953 -61241289 - LTR23 LTR ERV1 -194 243 161 705 133 55 0 chr6 121174042 121174170 -61241072 - LTR23 LTR ERV1 -295 142 8 514 269 15 8 chr6 121174174 121174308 -61240934 + MER5B DNA MER1_type 44 178 0 189 444 0 33 chr6 121174453 121174543 -61240699 + L2 LINE L2 3123 3209 -63 516 307 29 29 chr6 121174694 121174899 -61240343 + MIR SINE MIR 20 224 -38 238 175 0 0 chr6 121175445 121175485 -61239757 + HSMAR2 DNA Mariner 5 44 -1258 1347 137 13 0 chr6 121175485 121175711 -61239531 + HSMAR2 DNA Mariner 1069 1297 -5 714 297 14 5 chr6 121176247 121176469 -61238773 + MER58A DNA MER1_type 1 224 0 244 264 0 0 chr6 121176731 121176784 -61238458 + L2 LINE L2 3217 3269 -3 276 296 14 0 chr6 121178146 121178217 -61237025 - MER81 DNA DNA -1 113 42 1548 227 91 42 chr6 121178302 121178843 -61236399 - L1MC4 LINE L1 -97 7945 7379 1265 206 86 34 chr6 121179899 121180225 -61235017 + MER2 DNA MER2_type 1 343 -2 490 210 20 0 chr6 121182308 121182408 -61232834 + U13 snRNA snRNA 1 102 -2 272 280 102 8 chr6 121182871 121182989 -61232253 - MIR SINE MIR -53 209 81 203 286 117 0 chr6 121183235 121183312 -61231930 + L2 LINE L2 3159 3244 -69 189 0 0 0 chr6 121183644 121183665 -61231577 + (TG)n Simple_repeat Simple_repeat 2 22 0 312 27 0 0 chr6 121184188 121184225 -61231017 + (TG)n Simple_repeat Simple_repeat 2 38 0 1043 147 121 11 chr6 121184420 121184610 -61230632 + AluJo SINE Alu 82 292 -20 25 31 0 0 chr6 121184651 121184683 -61230559 + AT_rich Low_complexity Low_complexity 1 32 0 2179 138 27 11 chr6 121185385 121185754 -61229488 + THE1C LTR MaLR 1 375 0 1025 131 6 0 chr6 121185814 121185990 -61229252 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 230 143 0 0 chr6 121186168 121186210 -61229032 - L1MA5 LINE L1 -5 6295 6254 * 281 200 0 14 chr6 121186204 121186274 -61228968 + L1MA6 LINE L1 5974 6042 -258 535 306 26 83 chr6 121186423 121186916 -61228326 + MLT1J LTR MaLR 1 465 -46 213 224 209 15 chr6 121186932 121186999 -61228243 - MIR3 SINE MIR -25 183 104 229 212 61 30 chr6 121188043 121188109 -61227133 - L2 LINE L2 -8 3264 3197 1664 120 0 54 chr6 121189870 121190146 -61225096 - AluSx SINE Alu -16 296 36 292 277 57 21 chr6 121190200 121190341 -61224901 - MER103 DNA DNA -1 165 20 351 309 107 12 chr6 121191380 121191548 -61223694 + MIR SINE MIR 2 185 -77 329 258 62 0 chr6 121193004 121193101 -61222141 + MLT1J2 LTR MaLR 67 169 -281 234 191 0 0 chr6 121193122 121193164 -61222078 + MLT1J1 LTR MaLR 237 278 -168 2702 16 0 3 chr6 121195298 121195605 -61219637 + AluY SINE Alu 1 306 -5 2200 112 0 7 chr6 121196293 121196596 -61218646 + AluSg SINE Alu 1 301 -9 686 189 43 0 chr6 121196828 121196908 -61218334 + Charlie1 DNA MER1_type 2591 2666 -95 233 57 29 0 chr6 121196908 121196943 -61218299 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 686 189 43 0 chr6 121196943 121197026 -61218216 + Charlie1 DNA MER1_type 2666 2761 0 355 127 0 0 chr6 121197431 121197494 -61217748 + L1MA4 LINE L1 6231 6293 -7 180 0 0 0 chr6 121197741 121197761 -61217481 + (TTTAA)n Simple_repeat Simple_repeat 2 21 0 939 222 135 12 chr6 121198210 121198544 -61216698 + L1MC4a LINE L1 7434 7808 0 782 308 18 0 chr6 121198610 121198831 -61216411 + MIR SINE MIR 2 226 -36 232 176 59 0 chr6 121199763 121199814 -61215428 - LTR33A LTR ERVL -8 515 462 455 290 148 0 chr6 121199989 121200144 -61215098 - LTR33A LTR ERVL -345 178 1 310 335 28 50 chr6 121200192 121200374 -61214868 - MIR SINE MIR -20 242 65 256 316 191 15 chr6 121200459 121200595 -61214647 - MIR3 SINE MIR -6 202 43 230 309 102 59 chr6 121200752 121200988 -61214254 - L2 LINE L2 -1900 1414 1169 1355 156 127 7 chr6 121201275 121201558 -61213684 + MER33 DNA MER1_type 8 324 0 185 164 0 148 chr6 121201963 121202024 -61213218 + L2 LINE L2 2729 2780 -534 3723 191 70 5 chr6 121202139 121203362 -61211880 + L1MB2 LINE L1 4848 6149 -22 185 304 32 48 chr6 121205201 121205326 -61209916 - L2 LINE L2 -2652 662 540 340 335 77 24 chr6 121206249 121206419 -61208823 + MIR SINE MIR 20 198 -64 387 291 8 82 chr6 121206519 121206653 -61208589 - L2 LINE L2 0 3272 3149 23 33 0 0 chr6 121206907 121206937 -61208305 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 121207757 121207779 -61207463 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr6 121208273 121208308 -61206934 + AT_rich Low_complexity Low_complexity 1 35 0 32 26 0 0 chr6 121209516 121209555 -61205687 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 121211312 121211333 -61203909 + AT_rich Low_complexity Low_complexity 1 21 0 212 255 75 32 chr6 121211488 121211582 -61203660 - MIR SINE MIR -81 181 84 30 45 0 0 chr6 121211858 121211902 -61203340 + AT_rich Low_complexity Low_complexity 1 44 0 2703 205 78 8 chr6 121211952 121212614 -61202628 - L1MCa LINE L1 -3196 3230 2615 1776 164 0 0 chr6 121212614 121212903 -61202339 - AluSx SINE Alu 0 303 15 2703 205 78 8 chr6 121212903 121213558 -61201684 - L1MCa LINE L1 -3811 2615 1823 428 174 94 61 chr6 121213602 121213789 -61201453 - MER31-int LTR ERV1 -3387 2944 884 231 203 0 0 chr6 121213835 121213899 -61201343 + T-rich Low_complexity Low_complexity 1 64 0 5852 24 5 9 chr6 121213905 121214575 -61200667 - SVA Other Other 0 1386 720 5484 153 49 73 chr6 121214677 121215976 -61199266 - L1MCa LINE L1 -4183 2243 483 21 0 0 0 chr6 121216569 121216590 -61198652 + AT_rich Low_complexity Low_complexity 1 21 0 268 326 0 22 chr6 121216915 121217050 -61198192 + CT-rich Low_complexity Low_complexity 3 134 0 369 285 117 22 chr6 121217115 121217551 -61197691 - L1MC4 LINE L1 -554 7488 7009 464 299 7 27 chr6 121217684 121217831 -61197411 + L2 LINE L2 1275 1418 -1896 549 282 59 15 chr6 121217841 121218043 -61197199 - L1MC4 LINE L1 -1071 6971 6761 34 55 0 0 chr6 121218043 121218098 -61197144 + AT_rich Low_complexity Low_complexity 1 55 0 702 177 16 4 chr6 121218126 121218400 -61196842 + L1MB8 LINE L1 5798 6168 -10 32 0 0 0 chr6 121218749 121218781 -61196461 + AT_rich Low_complexity Low_complexity 1 32 0 1395 287 112 14 chr6 121219068 121220078 -61195164 - L2 LINE L2 -2 3311 2118 1521 279 38 8 chr6 121220079 121220574 -61194668 - L2 LINE L2 -1801 1513 1004 333 280 39 50 chr6 121220737 121220801 -61194441 - MIR SINE MIR -53 209 146 648 290 65 25 chr6 121220801 121221125 -61194117 + MER46C DNA MER2_type 1 337 -1 333 280 39 50 chr6 121221125 121221242 -61194000 - MIR SINE MIR -116 146 30 733 302 20 16 chr6 121221685 121221933 -61193309 - MIR SINE MIR -1 261 13 183 338 223 0 chr6 121221971 121222128 -61193114 - MIR SINE MIR 0 262 71 2264 171 15 0 chr6 121223288 121223680 -61191562 - MER57A LTR ERV1 -5 398 1 576 212 79 65 chr6 121223715 121224274 -61190968 - HUERS-P3b LTR ERV1 -2575 3756 1548 361 152 177 0 chr6 121224532 121224611 -61190631 - HUERS-P3b LTR ERV1 -2991 3340 3248 350 192 42 39 chr6 121224780 121224902 -61190340 - HUERS-P3b LTR ERV1 -3681 1947 1096 324 250 0 0 chr6 121225074 121225150 -61190092 - MER34C LTR ERV1 -355 230 155 260 238 16 16 chr6 121225221 121225284 -61189958 - HUERS-P3b LTR ERV1 -3380 4038 3976 5116 153 20 10 chr6 121225390 121226223 -61189019 - HUERS-P3b LTR ERV1 -6695 842 1 2214 166 18 2 chr6 121226223 121226620 -61188622 - MER57A LTR ERV1 0 403 1 1355 265 49 87 chr6 121226620 121227273 -61187969 - MER21B LTR ERV1 -212 651 24 1828 176 135 123 chr6 121227929 121228647 -61186595 + LTR8A LTR ERV1 1 727 0 1739 87 13 0 chr6 121230662 121230891 -61184351 + AluSq SINE Alu 73 304 -9 21 0 0 0 chr6 121231237 121231258 -61183984 + AT_rich Low_complexity Low_complexity 1 21 0 284 207 12 37 chr6 121232310 121232392 -61182850 + MLT1L LTR MaLR 173 252 -363 231 306 41 33 chr6 121232564 121232685 -61182557 + MLT1L LTR MaLR 477 598 -17 203 246 35 0 chr6 121233040 121233097 -61182145 + L2 LINE L2 3255 3313 0 7115 63 5 17 chr6 121233232 121234793 -61180449 - SVA Other Other -799 1386 1 320 339 23 23 chr6 121236771 121236901 -61178341 + MER5B DNA MER1_type 44 173 -5 426 20 0 0 chr6 121236984 121237035 -61178207 + (CA)n Simple_repeat Simple_repeat 2 52 0 270 103 77 0 chr6 121237041 121237119 -61178123 + (TA)n Simple_repeat Simple_repeat 2 85 0 544 133 22 144 chr6 121237715 121241240 -61174002 + MER53 DNA DNA 5 162 -27 21449 30 1 0 chr6 121237869 121241215 -61174027 - L1PA3 LINE L1 -3 6152 2804 522 140 12 116 chr6 121241215 121241262 -61173980 - MER53 DNA DNA -124 65 15 4142 110 2 10 chr6 121241268 121241635 -61173607 - L1PA13 LINE L1 -11 6152 5791 279 0 0 0 chr6 121241635 121241666 -61173576 + (TATG)n Simple_repeat Simple_repeat 2 32 0 4142 110 2 10 chr6 121241666 121241916 -61173326 - L1PA13 LINE L1 -372 5791 5540 570 197 250 13 chr6 121242016 121242168 -61173074 + MER5A DNA MER1_type 1 188 -1 1482 161 76 34 chr6 121242589 121242880 -61172362 - AluJo SINE Alu -9 303 1 216 149 0 0 chr6 121243059 121243106 -61172136 + (T)n Simple_repeat Simple_repeat 1 47 0 31014 107 7 38 chr6 121246520 121246987 -61168255 + L1PA7 LINE L1 1 481 -5988 22 0 0 0 chr6 121246987 121247009 -61168233 + AT_rich Low_complexity Low_complexity 1 22 0 31014 107 7 38 chr6 121247009 121251639 -61163603 + L1PA7 LINE L1 481 5254 -1215 1968 138 0 3 chr6 121251639 121251961 -61163281 + AluSc SINE Alu 1 321 0 31014 107 7 38 chr6 121251961 121252740 -61162502 + L1PA7 LINE L1 5254 5776 -693 2337 92 0 3 chr6 121252740 121253044 -61162198 + AluSc SINE Alu 1 303 -6 31014 107 7 38 chr6 121253044 121253718 -61161524 + L1PA7 LINE L1 5776 6469 0 1780 197 0 0 chr6 121254788 121255088 -61160154 + AluSx SINE Alu 1 300 -12 315 206 125 29 chr6 121255444 121255580 -61159662 - MER113 DNA MER1_type? -372 149 1 459 261 50 44 chr6 121255597 121255791 -61159451 + MIR SINE MIR 8 214 -48 8269 86 9 0 chr6 121256183 121258096 -61157146 - L1PA6 LINE L1 0 6154 4231 9547 66 1 0 chr6 121258096 121259351 -61155891 + L1PA6 LINE L1 2974 4229 -1917 2251 104 0 3 chr6 121259641 121259938 -61155304 + AluSc SINE Alu 1 296 -13 2529 204 16 25 chr6 121260431 121261077 -61154165 - L1M4 LINE L1 -1378 4768 4129 483 289 77 51 chr6 121261077 121261312 -61153930 - MLT1I LTR MaLR -70 339 99 2182 95 0 51 chr6 121261448 121261764 -61153478 - AluY SINE Alu -11 300 1 273 57 0 0 chr6 121261764 121261799 -61153443 + (TTA)n Simple_repeat Simple_repeat 1 35 0 272 352 42 36 chr6 121261800 121262107 -61153135 + L2 LINE L2 1082 1390 -1924 453 247 82 27 chr6 121262724 121262870 -61152372 - MIR SINE MIR -3 259 106 2517 200 70 2 chr6 121263490 121263521 -61151721 - MLT2B3 LTR ERVL -4 550 523 619 12 25 0 chr6 121263521 121263601 -61151641 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 2517 200 70 2 chr6 121263601 121264084 -61151158 - MLT2B3 LTR ERVL -31 523 1 282 250 28 0 chr6 121264309 121264381 -61150861 - MLT1K LTR MaLR -4 584 511 825 281 101 61 chr6 121264775 121265280 -61149962 + L2 LINE L2 1949 2473 -841 407 306 46 25 chr6 121265315 121265596 -61149646 - HAL1 LINE L1 -999 1508 1222 22 0 0 0 chr6 121265623 121265645 -61149597 + AT_rich Low_complexity Low_complexity 1 22 0 361 342 84 34 chr6 121265683 121265981 -61149261 + HAL1 LINE L1 1544 1856 -651 204 40 0 0 chr6 121267065 121267090 -61148152 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 283 257 0 122 chr6 121267274 121267422 -61147820 - L2 LINE L2 -209 3063 2934 201 304 71 0 chr6 121268605 121268661 -61146581 - L2 LINE L2 -67 3205 3146 310 206 32 0 chr6 121268986 121269049 -61146193 + L3 LINE CR1 656 720 -857 354 324 19 61 chr6 121269731 121269944 -61145298 + L3 LINE CR1 1064 1267 -310 202 395 70 13 chr6 121270173 121270330 -61144912 + L3 LINE CR1 1294 1459 -118 3832 129 10 96 chr6 121270710 121271491 -61143751 - MER50 LTR ERV1 -20 714 1 213 329 165 0 chr6 121272295 121272374 -61142868 - L2 LINE L2 -23 3290 3199 276 289 0 0 chr6 121274502 121274578 -61140664 + L1M4 LINE L1 3741 3816 -2330 578 193 37 7 chr6 121274591 121274726 -61140516 + Charlie1 DNA MER1_type 104 242 -2519 374 175 10 21 chr6 121274709 121274806 -61140436 + Charlie1 DNA MER1_type 2622 2717 -44 * 22 35 0 0 chr6 121274945 121274974 -61140268 + AT_rich Low_complexity Low_complexity 1 29 0 807 177 75 5 chr6 121275066 121275252 -61139990 - L1MC3 LINE L1 -1 7784 7586 764 220 11 5 chr6 121275250 121275436 -61139806 + L1MC3 LINE L1 7301 7487 -298 * 835 159 29 12 chr6 121275443 121275613 -61139629 - L1MC3 LINE L1 -202 7583 7411 798 243 94 25 chr6 121275623 121275899 -61139343 - L1MC3 LINE L1 -491 7294 7000 862 271 86 27 chr6 121275899 121276272 -61138970 + MSTD LTR MaLR 1 395 -1 969 177 53 90 chr6 121276272 121276571 -61138671 - L1MC3 LINE L1 -782 7003 6716 267 254 79 40 chr6 121276939 121277065 -61138177 - MIR SINE MIR -28 234 104 539 336 32 28 chr6 121277383 121277636 -61137606 - MIR SINE MIR 0 262 9 1393 214 70 81 chr6 121278117 121278548 -61136694 + MLT2B1 LTR ERVL 1 426 -94 455 159 24 32 chr6 121278633 121278891 -61136351 + (TTATA)n Simple_repeat Simple_repeat 1 255 0 243 194 34 51 chr6 121278914 121279089 -61136153 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 * 335 158 58 29 chr6 121278966 121279105 -61136137 + (TA)n Simple_repeat Simple_repeat 1 143 0 274 114 91 0 chr6 121279110 121279154 -61136088 + MLT2B1 LTR ERVL 417 464 0 561 247 72 28 chr6 121279159 121279434 -61135808 + MLT1G LTR MaLR 32 400 -190 863 245 59 29 chr6 121280678 121280951 -61134291 - L2 LINE L2 -10 3303 3023 24 53 0 0 chr6 121281641 121281679 -61133563 + AT_rich Low_complexity Low_complexity 1 38 0 2241 134 26 1 chr6 121282033 121282465 -61132777 - L1M1 LINE L1 -680 5625 5180 264 324 9 9 chr6 121282593 121282698 -61132544 + MLT1J2 LTR MaLR 346 450 0 228 67 0 0 chr6 121282726 121282756 -61132486 + (T)n Simple_repeat Simple_repeat 1 30 0 698 198 38 0 chr6 121282760 121283046 -61132196 - L1M1 LINE L1 -969 5177 4826 * 2868 150 13 15 chr6 121283041 121283573 -61131669 + L1MA4 LINE L1 5636 6166 -134 741 266 141 27 chr6 121283740 121284109 -61131133 - LTR16A LTR ERVL -9 441 31 2138 112 3 0 chr6 121284193 121284496 -61130746 + AluSx SINE Alu 3 306 -6 238 300 73 69 chr6 121284784 121285812 -61129430 - L1M4 LINE L1 -1744 4402 3371 32 67 0 0 chr6 121285891 121285951 -61129291 + AT_rich Low_complexity Low_complexity 1 60 0 929 124 0 0 chr6 121286012 121286141 -61129101 - AluSq/x SINE Alu -180 133 5 1054 207 8 53 chr6 121287033 121287299 -61127943 - L1MD3 LINE L1 -173 7822 7569 1453 106 5 0 chr6 121287315 121287522 -61127720 - AluSq SINE Alu -6 307 100 226 196 406 0 chr6 121288092 121288230 -61127012 + MER5C DNA MER1_type 130 323 -1 13659 178 40 15 chr6 121289248 121293496 -61121746 - L1PB2 LINE L1 -36 6831 2465 21 0 0 0 chr6 121294170 121294191 -61121051 + AT_rich Low_complexity Low_complexity 1 21 0 264 212 0 61 chr6 121294363 121294429 -61120813 + MLT1L LTR MaLR 1 62 -553 271 312 26 0 chr6 121294576 121294653 -61120589 + MLT1L LTR MaLR 309 387 -228 21 71 0 0 chr6 121295202 121295244 -61119998 + AT_rich Low_complexity Low_complexity 1 42 0 2011 136 14 0 chr6 121295287 121295582 -61119660 - AluSq SINE Alu -14 299 1 265 263 0 0 chr6 121296813 121296870 -61118372 + LTR40a LTR ERVL 41 97 -422 1418 254 103 17 chr6 121297262 121297727 -61117515 - LTR40a LTR ERVL -14 505 1 866 229 147 13 chr6 121297789 121298020 -61117222 + MLT1G1 LTR MaLR 334 595 0 2029 139 3 10 chr6 121298636 121298946 -61116296 - AluSx SINE Alu -2 310 3 649 221 8 0 chr6 121299594 121299716 -61115526 + MER58B DNA MER1_type 184 306 -35 329 293 29 52 chr6 121299753 121300097 -61115145 - L1MEc LINE L1 -5050 1155 819 460 260 224 5 chr6 121301314 121301510 -61113732 - MIR SINE MIR -2 260 22 468 300 233 7 chr6 121301838 121302121 -61113121 + L2 LINE L2 2966 3312 -1 616 266 0 0 chr6 121302198 121302337 -61112905 - L1MEc LINE L1 -6219 177 39 24 67 0 0 chr6 121303128 121303173 -61112069 + AT_rich Low_complexity Low_complexity 1 45 0 256 352 49 43 chr6 121304004 121304166 -61111076 - MIR SINE MIR -65 197 35 216 263 92 13 chr6 121304419 121304495 -61110747 + L2 LINE L2 663 744 -2570 557 343 96 48 chr6 121304675 121305173 -61110069 - L2 LINE L2 -536 2778 2257 280 360 33 13 chr6 121305281 121305431 -61109811 - L2 LINE L2 -1387 1927 1775 212 220 36 168 chr6 121305685 121305935 -61109307 + L2 LINE L2 2843 3059 -213 8785 172 19 17 chr6 121306174 121307733 -61107509 + L1MA3 LINE L1 22 1583 -5982 1848 122 21 37 chr6 121307728 121308055 -61107187 + L1MA3 LINE L1 2669 2990 -4575 * 11456 167 20 12 chr6 121308056 121308177 -61107065 + L1MA3 LINE L1 4340 4459 -3265 2089 124 0 0 chr6 121308177 121308481 -61106761 + AluSq SINE Alu 1 304 0 11456 167 20 12 chr6 121308481 121311714 -61103528 + L1MA3 LINE L1 4459 7724 0 301 206 47 0 chr6 121312061 121312168 -61103074 + (TA)n Simple_repeat Simple_repeat 1 112 0 883 254 40 74 chr6 121313577 121313675 -61101567 - MLT1A1 LTR MaLR 0 365 265 1974 140 50 31 chr6 121313675 121314032 -61101210 + THE1B LTR MaLR 1 364 0 11373 106 3 1 chr6 121314032 121315608 -61099634 + THE1A-int LTR MaLR 1 1580 0 1999 105 99 42 chr6 121315610 121315815 -61099427 + THE1A LTR MaLR 3 236 -119 2414 99 0 0 chr6 121315815 121316119 -61099123 + AluSx SINE Alu 5 308 -4 1999 105 99 42 chr6 121316119 121316247 -61098995 + THE1A LTR MaLR 236 355 0 883 254 40 74 chr6 121316247 121316522 -61098720 - MLT1A1 LTR MaLR -100 265 1 21 36 0 0 chr6 121316667 121316695 -61098547 + AT_rich Low_complexity Low_complexity 1 28 0 1398 246 73 21 chr6 121317596 121318019 -61097223 - L1MC4 LINE L1 -149 7893 7449 622 269 6 6 chr6 121318135 121318302 -61096940 - L1MC4 LINE L1 -1416 6626 6460 195 254 0 0 chr6 121318581 121318644 -61096598 + GA-rich Low_complexity Low_complexity 4 66 0 2759 139 34 12 chr6 121318817 121319765 -61095477 - L1MA9 LINE L1 -1 6311 5296 1193 185 9 0 chr6 121320535 121320767 -61094475 + L1MA4 LINE L1 6064 6297 -3 225 0 0 0 chr6 121320830 121320855 -61094387 + (TG)n Simple_repeat Simple_repeat 2 26 0 2100 113 3 0 chr6 121320855 121321142 -61094100 - AluSg SINE Alu -22 288 1 24 0 0 0 chr6 121321148 121321172 -61094070 + AT_rich Low_complexity Low_complexity 1 24 0 224 194 16 16 chr6 121321203 121321265 -61093977 + T-rich Low_complexity Low_complexity 6 67 0 218 264 0 0 chr6 121323817 121323870 -61091372 + (CGAG)n Simple_repeat Simple_repeat 2 54 0 755 304 78 52 chr6 121323947 121324355 -61090887 + L2 LINE L2 2895 3313 0 265 362 48 0 chr6 121324669 121324774 -61090468 - L2 LINE L2 -6 3266 3157 206 394 0 0 chr6 121325302 121325373 -61089869 - L2 LINE L2 -22 3291 3221 204 346 29 19 chr6 121327187 121327291 -61087951 + MIR3 SINE MIR 50 154 -54 1896 220 54 20 chr6 121328078 121328538 -61086704 - Charlie1a DNA MER1_type -978 477 2 556 340 105 51 chr6 121328538 121329084 -61086158 - L1M4 LINE L1 -2449 3697 3182 1976 101 3 88 chr6 121329084 121329412 -61085830 + AluSq SINE Alu 1 300 -13 556 340 105 51 chr6 121329412 121330223 -61085019 - L1M4 LINE L1 -2964 3182 2266 23 0 0 0 chr6 121330351 121330374 -61084868 + AT_rich Low_complexity Low_complexity 1 23 0 2135 124 0 0 chr6 121330491 121330802 -61084440 - AluSx SINE Alu 0 311 1 30 59 0 0 chr6 121330931 121330982 -61084260 + AT_rich Low_complexity Low_complexity 1 51 0 718 294 69 60 chr6 121331051 121331830 -61083412 - HAL1b LINE L1 -498 850 65 1732 264 39 10 chr6 121332368 121332850 -61082392 + MLT1H1 LTR MaLR 22 517 -38 2377 46 0 3 chr6 121333043 121333395 -61081847 - AluY SINE Alu 0 351 1 187 385 83 0 chr6 121333516 121333612 -61081630 - MIR SINE MIR -75 133 30 30977 38 4 2 chr6 121334720 121338532 -61076710 - L1P LINE L1 -1684 4462 644 7527 24 9 0 chr6 121338532 121340072 -61075170 + L1PA3 LINE L1 4605 6155 0 205 276 87 63 chr6 121340161 121340288 -61074954 - L2 LINE L2 -1414 1900 1771 184 294 20 0 chr6 121340424 121340475 -61074767 - MIR SINE MIR -112 150 99 351 218 98 92 chr6 121341434 121341608 -61073634 + MIR SINE MIR 52 226 -36 194 0 39 0 chr6 121341624 121341650 -61073592 + (TC)n Simple_repeat Simple_repeat 2 28 0 235 210 136 0 chr6 121341663 121341744 -61073498 + L1MC4 LINE L1 6611 6702 -1340 740 339 160 34 chr6 121342010 121343340 -61071902 + L2 LINE L2 926 2423 -891 1438 219 115 28 chr6 121343345 121343893 -61071349 + MLT1E3 LTR MaLR 6 624 0 299 346 68 60 chr6 121343907 121344375 -61070867 + L2 LINE L2 2432 2903 -411 2900 3 0 0 chr6 121346091 121346402 -61068840 + AluYa5 SINE Alu 1 311 0 22 35 0 0 chr6 121347319 121347348 -61067894 + AT_rich Low_complexity Low_complexity 1 29 0 577 254 33 58 chr6 121348078 121348318 -61066924 - L1ME1 LINE L1 -5 6161 5928 3253 248 92 39 chr6 121348459 121349562 -61065680 - L1ME1 LINE L1 -208 5958 4915 2163 118 3 0 chr6 121349562 121349859 -61065383 - AluSx SINE Alu -14 298 1 3253 248 92 39 chr6 121349859 121350891 -61064351 - L1ME1 LINE L1 -1251 4915 3687 1378 231 96 12 chr6 121350874 121351355 -61063887 - L1ME1 LINE L1 -2879 3267 2747 * 449 320 81 25 chr6 121351477 121351844 -61063398 + MLT1H LTR MaLR 97 523 -26 620 222 123 92 chr6 121351924 121352208 -61063034 + MLT1H LTR MaLR 255 547 -2 188 0 0 69 chr6 121353010 121353039 -61062203 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 345 306 14 49 chr6 121353427 121353593 -61061649 + MIR SINE MIR 38 197 -65 451 284 205 0 chr6 121353820 121354010 -61061232 - MIR SINE MIR -32 230 2 812 271 138 11 chr6 121354159 121354506 -61060736 - L2 LINE L2 -4 3309 2919 1000 219 75 18 chr6 121354789 121355067 -61060175 + AluJb SINE Alu 3 296 -6 306 0 0 0 chr6 121355103 121355137 -61060105 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 394 267 6 91 chr6 121355202 121355368 -61059874 + MIR3 SINE MIR 54 206 -2 907 367 59 42 chr6 121357801 121358576 -61056666 + L2 LINE L2 2230 3016 -256 23 0 0 0 chr6 121358586 121358609 -61056633 + AT_rich Low_complexity Low_complexity 1 23 0 360 200 0 0 chr6 121359131 121359206 -61056036 + CT-rich Low_complexity Low_complexity 4 78 0 231 246 0 31 chr6 121359912 121359977 -61055265 + (TATG)n Simple_repeat Simple_repeat 2 64 0 1318 221 53 18 chr6 121360134 121360474 -61054768 + MLT1A1 LTR MaLR 10 361 -4 22 35 0 0 chr6 121360522 121360551 -61054691 + AT_rich Low_complexity Low_complexity 1 29 0 324 343 35 17 chr6 121360697 121360869 -61054373 - MIR SINE MIR 0 262 88 1905 152 24 0 chr6 121362479 121362776 -61052466 - AluSx SINE Alu -8 304 1 3639 137 25 14 chr6 121415095 121415723 -60999519 + MER41B LTR ERV1 1 635 0 21 36 0 0 chr6 121416305 121416333 -60998909 + AT_rich Low_complexity Low_complexity 1 28 0 4911 111 3 19 chr6 121416721 121417495 -60997747 + L1P LINE L1 4529 5289 -857 396 0 0 0 chr6 121417781 121417825 -60997417 + (GA)n Simple_repeat Simple_repeat 2 45 0 234 0 0 0 chr6 121417824 121417850 -60997392 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 1739 116 7 43 chr6 121418457 121418529 -60996713 - THE1B LTR MaLR 0 364 291 2334 91 7 0 chr6 121418529 121418836 -60996406 + AluSc SINE Alu 1 309 0 1739 116 7 43 chr6 121418836 121419039 -60996203 - THE1B LTR MaLR -73 291 99 3516 187 63 136 chr6 121419040 121420721 -60994521 + MER52C LTR ERV1 12 1278 0 763 114 0 0 chr6 121420721 121420826 -60994416 - THE1C LTR MaLR -270 105 1 24 67 0 0 chr6 121421350 121421395 -60993847 + AT_rich Low_complexity Low_complexity 1 45 0 285 352 121 30 chr6 121421723 121422121 -60993121 - L3 LINE CR1 -239 1338 905 1474 188 50 17 chr6 121422125 121422423 -60992819 - MLT1A1 LTR MaLR -2 363 56 270 359 10 0 chr6 121422584 121422687 -60992555 - MIR3 SINE MIR -3 205 102 3733 184 21 12 chr6 121422716 121423481 -60991761 - L1 LINE L1 -900 5246 4475 21 57 0 0 chr6 121423481 121423516 -60991726 + AT_rich Low_complexity Low_complexity 1 35 0 429 351 95 26 chr6 121423713 121424175 -60991067 + L1MC/D LINE L1 4739 5232 -914 636 288 67 64 chr6 121424191 121424725 -60990517 + L1MC/D LINE L1 5256 5791 -2017 2103 90 10 10 chr6 121425096 121425386 -60989856 + AluSp SINE Alu 3 292 -21 240 146 0 42 chr6 121426182 121426230 -60989012 - HsTC2 DNA Tc2 -1819 79 34 517 252 119 13 chr6 121426817 121426976 -60988266 + MER58A DNA MER1_type 45 220 -4 30 69 0 0 chr6 121427094 121427152 -60988090 + AT_rich Low_complexity Low_complexity 1 58 0 200 173 39 0 chr6 121427263 121427315 -60987927 + (TA)n Simple_repeat Simple_repeat 2 55 0 2343 84 0 0 chr6 121427804 121428101 -60987141 + AluSx SINE Alu 1 297 -15 215 308 66 11 chr6 121428140 121428231 -60987011 - MIR SINE MIR -135 127 32 551 213 173 14 chr6 121428919 121429107 -60986135 - MLT2B1 LTR ERVL -12 508 235 2028 136 45 23 chr6 121429122 121429475 -60985767 + THE1C LTR MaLR 15 375 0 1158 228 27 11 chr6 121429477 121429740 -60985502 - MLT2B1 LTR ERVL -253 267 1 341 238 0 0 chr6 121429766 121429846 -60985396 + L2 LINE L2 2683 2762 -552 1685 152 51 36 chr6 121430740 121431096 -60984146 - MER46B DNA MER2_type 0 236 1 371 284 120 83 chr6 121431227 121431635 -60983607 - L1 LINE L1 -953 5193 4771 243 0 0 0 chr6 121431718 121431745 -60983497 + (TG)n Simple_repeat Simple_repeat 1 27 0 298 235 0 71 chr6 121433445 121433530 -60981712 - MIR SINE MIR -86 176 98 41 0 0 0 chr6 121436775 121436816 -60978426 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr6 121436852 121436881 -60978361 + AT_rich Low_complexity Low_complexity 1 29 0 1310 149 23 32 chr6 121437034 121437255 -60977987 - MER20 DNA MER1_type 0 219 1 370 278 68 49 chr6 121437823 121437985 -60977257 - MIR3 SINE MIR -12 196 32 285 291 90 8 chr6 121439819 121439967 -60975275 + MIR SINE MIR 19 180 -62 373 321 72 26 chr6 121440769 121441115 -60974127 - L1ME4a LINE L1 -237 5884 5523 26 93 0 0 chr6 121441337 121441412 -60973830 + AT_rich Low_complexity Low_complexity 1 75 0 29 0 0 0 chr6 121441756 121441785 -60973457 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 121441840 121441861 -60973381 + AT_rich Low_complexity Low_complexity 1 21 0 239 79 26 0 chr6 121443096 121443134 -60972108 + (TG)n Simple_repeat Simple_repeat 2 40 0 2032 117 16 23 chr6 121443208 121443516 -60971726 + AluSx SINE Alu 1 306 -6 465 327 153 28 chr6 121443624 121444090 -60971152 - L2 LINE L2 -5 3308 2787 1119 272 94 8 chr6 121444094 121444487 -60970755 - LTR16A LTR ERVL -1 449 23 210 368 13 0 chr6 121444489 121444565 -60970677 - L2 LINE L2 -536 2778 2702 194 0 39 0 chr6 121444874 121444900 -60970342 + (TG)n Simple_repeat Simple_repeat 2 28 0 756 230 186 34 chr6 121445150 121445441 -60969801 + L1MD2 LINE L1 6012 6346 -13 297 327 164 0 chr6 121445487 121445646 -60969596 + L2 LINE L2 2166 2350 -964 346 286 46 57 chr6 121445735 121445910 -60969332 - MIR SINE MIR -70 192 20 37107 31 21 3 chr6 121446723 121452199 -60963043 + L1P1 LINE L1 1 5608 -547 296 343 20 0 chr6 121452302 121452401 -60962841 + MLT1J1 LTR MaLR 216 316 -130 3226 96 16 0 chr6 121452474 121452920 -60962322 + MLT2A2 LTR ERVL 1 453 0 368 257 37 46 chr6 121453151 121453260 -60961982 + MER91C DNA MER1_type 33 140 0 462 261 48 48 chr6 121453817 121453982 -60961260 + MER5A DNA MER1_type 25 189 0 29 60 0 0 chr6 121455052 121455102 -60960140 + AT_rich Low_complexity Low_complexity 1 50 0 241 102 34 17 chr6 121455838 121455897 -60959345 + (TTAAA)n Simple_repeat Simple_repeat 2 61 0 429 314 89 29 chr6 121455948 121456330 -60958912 - L1ME4a LINE L1 -195 5926 5522 414 331 40 34 chr6 121458428 121458603 -60956639 - MIR SINE MIR -67 195 20 3271 145 70 80 chr6 121460117 121461132 -60954110 + pTR5 LTR ERV1 741 2025 -413 329 240 31 0 chr6 121461132 121461228 -60954014 + LTR30 LTR ERV1 544 642 -80 2348 86 9 0 chr6 121461228 121461552 -60953690 + pTR5 LTR ERV1 66 392 -2046 216 390 85 15 chr6 121461887 121462087 -60953155 - L3 LINE CR1 -1333 244 31 2413 86 3 0 chr6 121462659 121462961 -60952281 - AluSp SINE Alu -10 303 1 444 19 0 0 chr6 121463294 121463347 -60951895 + (CA)n Simple_repeat Simple_repeat 2 54 0 341 384 60 51 chr6 121463614 121463929 -60951313 - L2 LINE L2 0 3272 2955 303 303 138 86 chr6 121463953 121464280 -60950962 - L2 LINE L2 -591 2723 2380 183 156 0 0 chr6 121464349 121464381 -60950861 + C-rich Low_complexity Low_complexity 4 35 0 31 0 0 0 chr6 121464793 121464824 -60950418 + AT_rich Low_complexity Low_complexity 1 31 0 770 132 0 0 chr6 121464909 121465030 -60950212 + L1MB1 LINE L1 5494 5614 -554 2069 132 50 26 chr6 121465030 121465372 -60949870 - THE1B LTR MaLR -13 351 2 2954 148 19 39 chr6 121465372 121465940 -60949302 + L1MB1 LINE L1 5609 6165 -3 10868 80 13 5 chr6 121466508 121468767 -60946475 + L1PA6 LINE L1 3880 6154 0 405 0 0 0 chr6 121469232 121469277 -60945965 + (TG)n Simple_repeat Simple_repeat 2 46 0 2136 100 3 10 chr6 121469359 121469659 -60945583 + AluSc SINE Alu 1 298 -11 287 331 96 13 chr6 121470681 121470838 -60944404 + MIR SINE MIR 91 260 -2 24 67 0 0 chr6 121471175 121471220 -60944022 + AT_rich Low_complexity Low_complexity 1 45 0 258 32 0 0 chr6 121471264 121471295 -60943947 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr6 121471752 121471775 -60943467 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 225 310 17 26 chr6 121473342 121473458 -60941784 + MIR SINE MIR 148 262 0 252 346 13 0 chr6 121473610 121473763 -60941479 + (TA)n Simple_repeat Simple_repeat 1 155 0 21 0 0 0 chr6 121474028 121474049 -60941193 + AT_rich Low_complexity Low_complexity 1 21 0 249 281 156 0 chr6 121474442 121474538 -60940704 - MIR SINE MIR -21 241 131 234 256 8 23 chr6 121474763 121474892 -60940350 + CT-rich Low_complexity Low_complexity 2 128 0 29 70 0 0 chr6 121475240 121475297 -60939945 + AT_rich Low_complexity Low_complexity 1 57 0 242 358 126 14 chr6 121475382 121475675 -60939567 + L2 LINE L2 2511 2836 -478 609 219 97 34 chr6 121475779 121476017 -60939225 + MER112 DNA MER1_type 8 260 0 516 323 36 27 chr6 121476018 121476241 -60939001 + MIR SINE MIR 12 236 -26 200 154 19 0 chr6 121476529 121476581 -60938661 + (CA)n Simple_repeat Simple_repeat 2 54 0 294 280 17 68 chr6 121476686 121476804 -60938438 + L2 LINE L2 3169 3280 -33 387 0 0 0 chr6 121477988 121478031 -60937211 + (TG)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr6 121479452 121479473 -60935769 + AT_rich Low_complexity Low_complexity 1 21 0 365 335 92 6 chr6 121479521 121479698 -60935544 - MIR SINE MIR -58 204 13 1482 178 55 7 chr6 121479783 121480076 -60935166 - AluJo SINE Alu 0 312 6 200 181 35 14 chr6 121481775 121481919 -60933323 + (TA)n Simple_repeat Simple_repeat 2 148 0 369 291 24 0 chr6 121482252 121482379 -60932863 + L2 LINE L2 3117 3246 -67 42698 36 22 1 chr6 121482726 121488752 -60926490 + L1HS LINE L1 1 6154 -1 2092 89 57 3 chr6 121490204 121490486 -60924756 + AluSp SINE Alu 1 297 -16 24 67 0 0 chr6 121491045 121491090 -60924152 + AT_rich Low_complexity Low_complexity 1 45 0 240 35 0 0 chr6 121492147 121492176 -60923066 + (CA)n Simple_repeat Simple_repeat 1 29 0 180 152 0 0 chr6 121492177 121492210 -60923032 + (TA)n Simple_repeat Simple_repeat 1 33 0 3281 168 42 55 chr6 121492303 121493017 -60922225 + MER44D DNA MER2_type 1 705 0 24 0 0 0 chr6 121493530 121493554 -60921688 + AT_rich Low_complexity Low_complexity 1 24 0 239 53 0 26 chr6 121494184 121494222 -60921020 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 334 288 101 78 chr6 121494810 121495029 -60920213 - LTR16C LTR ERVL -232 259 36 235 272 62 0 chr6 121495671 121495752 -60919490 - L1ME LINE L1 -343 5778 5693 269 344 0 87 chr6 121496284 121496479 -60918763 + MER5B DNA MER1_type 1 178 0 314 321 166 18 chr6 121496632 121496909 -60918333 + L2 LINE L2 2069 2386 -928 1144 111 42 46 chr6 121496929 121497145 -60918097 - L1MA5A LINE L1 -10 6287 6073 3529 130 4 4 chr6 121497145 121497654 -60917588 - MER1A DNA MER1_type -2 527 19 1563 148 43 10 chr6 121497654 121497958 -60917284 - L1MA5A LINE L1 -213 6084 5771 334 350 10 0 chr6 121498229 121498332 -60916910 - L2 LINE L2 -47 3225 3122 210 164 36 18 chr6 121498602 121498657 -60916585 + (TTA)n Simple_repeat Simple_repeat 3 58 0 260 281 16 0 chr6 121498859 121498923 -60916319 - MIR SINE MIR -118 144 80 2083 131 0 7 chr6 121499047 121499353 -60915889 + AluSx SINE Alu 1 304 -8 2215 99 7 3 chr6 121500411 121500704 -60914538 - AluSc SINE Alu -15 294 1 318 353 65 26 chr6 121501845 121502151 -60913091 - L2 LINE L2 -2221 1093 776 769 291 23 23 chr6 121502306 121502567 -60912675 - MIR SINE MIR 0 262 2 260 294 147 57 chr6 121502567 121502766 -60912476 - L2 LINE L2 -2770 544 327 299 321 271 0 chr6 121502883 121503023 -60912219 + MER91A DNA MER1_type 18 195 -1 603 346 25 57 chr6 121503524 121503931 -60911311 + L2 LINE L2 2854 3247 -25 303 261 0 0 chr6 121504421 121504486 -60910756 + MIR SINE MIR 36 100 -108 236 263 100 0 chr6 121504539 121504619 -60910623 - MIR SINE MIR -64 198 111 25 31 0 0 chr6 121505323 121505355 -60909887 + AT_rich Low_complexity Low_complexity 1 32 0 277 250 0 0 chr6 121506933 121507001 -60908241 - LTR41 LTR ERVL -6 767 700 669 215 28 34 chr6 121507541 121507718 -60907524 - LTR41 LTR ERVL -597 176 1 586 230 0 0 chr6 121507737 121507863 -60907379 - FRAM SINE Alu -6 170 45 195 354 0 0 chr6 121507885 121507950 -60907292 + MIR SINE MIR 87 151 -57 24 32 0 0 chr6 121508248 121508279 -60906963 + AT_rich Low_complexity Low_complexity 1 31 0 2016 119 30 0 chr6 121508732 121509027 -60906215 + AluSx SINE Alu 1 304 -8 1899 147 5 80 chr6 121509503 121509878 -60905364 + MER7A DNA MER2_type 1 345 -1 231 245 153 108 chr6 121509979 121510403 -60904839 - MLT1J LTR MaLR -59 452 10 195 100 0 0 chr6 121510459 121510489 -60904753 + (CA)n Simple_repeat Simple_repeat 2 31 0 188 43 64 21 chr6 121510505 121510552 -60904690 + (TA)n Simple_repeat Simple_repeat 1 49 0 2450 122 6 3 chr6 121512611 121512972 -60902270 - THE1B LTR MaLR -2 362 1 28 0 0 0 chr6 121513052 121513080 -60902162 + AT_rich Low_complexity Low_complexity 1 28 0 1127 274 97 7 chr6 121513483 121514382 -60900860 - L1ME1 LINE L1 -5 6161 5184 321 167 45 15 chr6 121514384 121514450 -60900792 + L1M4 LINE L1 3480 3547 -2599 * 333 299 0 22 chr6 121514449 121514586 -60900656 + L1MEc LINE L1 1895 2028 -4368 2431 230 71 16 chr6 121514621 121515242 -60900000 + L1MEc LINE L1 2315 2999 -3216 180 0 0 0 chr6 121515242 121515262 -60899980 + (CA)n Simple_repeat Simple_repeat 1 20 0 2431 230 71 16 chr6 121515262 121515518 -60899724 + L1MEc LINE L1 2999 3240 -2975 969 180 37 23 chr6 121515522 121515739 -60899503 - Tigger1 DNA MER2_type 0 2418 2199 4415 141 24 0 chr6 121515858 121516574 -60898668 - Tigger1 DNA MER2_type -205 2213 1481 186 43 0 0 chr6 121516584 121516607 -60898635 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 625 143 176 0 chr6 121516614 121516733 -60898509 - AluJo SINE Alu -32 280 141 1993 157 26 14 chr6 121516736 121517081 -60898161 - MSTB LTR MaLR 0 426 78 482 141 0 0 chr6 121517087 121517158 -60898084 + MSTB LTR MaLR 9 79 -347 2053 100 0 69 chr6 121517177 121517497 -60897745 + AluSc SINE Alu 1 298 -11 776 122 0 24 chr6 121517526 121517649 -60897593 - AluJo SINE Alu -168 144 25 9043 143 15 9 chr6 121517692 121519163 -60896079 - Tigger1 DNA MER2_type -939 1479 1 2150 249 102 22 chr6 121519174 121520001 -60895241 + L1MEc LINE L1 3195 4087 -2128 201 74 0 0 chr6 121520559 121520586 -60894656 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 234 208 0 0 chr6 121521101 121521154 -60894088 + (TA)n Simple_repeat Simple_repeat 2 54 0 1102 230 97 7 chr6 121523771 121524080 -60891162 + MER58B DNA MER1_type 5 341 0 672 258 73 0 chr6 121525248 121525426 -60889816 + L2 LINE L2 3123 3313 0 434 281 101 40 chr6 121526364 121526592 -60888650 - MLT1I LTR MaLR -167 242 1 229 174 0 139 chr6 121526686 121526801 -60888441 + L1MC4 LINE L1 6606 6704 -1338 21 57 0 0 chr6 121526905 121526940 -60888302 + AT_rich Low_complexity Low_complexity 1 35 0 267 318 40 66 chr6 121528297 121528448 -60886794 - L2 LINE L2 0 3313 3167 1196 207 159 93 chr6 121528485 121528988 -60886254 - MLT2B3 LTR ERVL 0 554 19 296 253 56 138 chr6 121529051 121529255 -60885987 + MIR3 SINE MIR 56 241 -21 2146 74 0 0 chr6 121529753 121530022 -60885220 - AluY SINE Alu -8 303 35 22 56 0 0 chr6 121530022 121530058 -60885184 + AT_rich Low_complexity Low_complexity 1 36 0 193 327 179 18 chr6 121530066 121530234 -60885008 - MIR SINE MIR -8 254 60 9263 202 34 31 chr6 121530397 121532609 -60882633 - L1MC3 LINE L1 -8 7777 5559 222 294 0 0 chr6 121532778 121532829 -60882413 + polypyrimidine Low_complexity Low_complexity 3 53 0 29 0 0 0 chr6 121534420 121534449 -60880793 + AT_rich Low_complexity Low_complexity 1 29 0 2015 242 82 22 chr6 121534488 121535111 -60880131 - L1ME1 LINE L1 -10 6225 5566 3173 164 8 2 chr6 121535113 121535618 -60879624 + MLT2B1 LTR ERVL 5 512 -8 565 283 25 21 chr6 121535622 121535859 -60879383 - L1ME1 LINE L1 -2279 5575 5338 317 266 131 26 chr6 121536015 121536244 -60878998 - L1ME1 LINE L1 -949 5266 5014 2634 257 107 55 chr6 121536324 121537267 -60877975 - L1ME1 LINE L1 -2622 3593 2701 2127 111 3 0 chr6 121537267 121537555 -60877687 + AluSx SINE Alu 3 291 -21 2634 257 107 55 chr6 121537555 121537735 -60877507 - L1ME1 LINE L1 -3514 2701 2532 862 74 8 0 chr6 121537735 121537856 -60877386 - L1MA1 LINE L1 -7 6295 6174 2634 257 107 55 chr6 121537856 121539846 -60875396 - L1ME1 LINE L1 -3683 2532 350 21 36 0 0 chr6 121541219 121541247 -60873995 + AT_rich Low_complexity Low_complexity 1 28 0 350 214 20 0 chr6 121541869 121541967 -60873275 + (CATA)n Simple_repeat Simple_repeat 3 102 0 631 193 96 6 chr6 121542603 121542769 -60872473 + MER53 DNA DNA 1 181 -8 1836 272 47 13 chr6 121544710 121545247 -60869995 + MLT1H1 LTR MaLR 1 555 0 254 33 0 0 chr6 121545727 121545757 -60869485 + MER68 LTR ERV1 1 30 -532 2460 75 3 0 chr6 121545757 121546064 -60869178 + AluY SINE Alu 1 308 -3 2769 190 32 20 chr6 121546077 121546615 -60868627 + MER68 LTR ERV1 17 560 -2 402 153 20 10 chr6 121546642 121546740 -60868502 + (CA)n Simple_repeat Simple_repeat 1 99 0 23 0 0 0 chr6 121546766 121546789 -60868453 + AT_rich Low_complexity Low_complexity 1 23 0 1188 295 80 40 chr6 121546863 121547466 -60867776 + L2 LINE L2 1799 2425 -889 23 68 0 0 chr6 121547772 121547816 -60867426 + AT_rich Low_complexity Low_complexity 1 44 0 278 273 50 30 chr6 121547999 121548098 -60867144 + L2 LINE L2 2569 2669 -645 214 307 53 0 chr6 121548199 121548274 -60866968 + MIR SINE MIR 116 194 -68 2200 79 0 16 chr6 121548519 121548822 -60866420 - AluY SINE Alu -13 298 1 645 130 28 0 chr6 121550220 121550328 -60864914 - L1M2 LINE L1 -686 5614 5504 290 322 76 0 chr6 121551058 121551176 -60864066 - L2 LINE L2 -4 3268 3142 224 211 0 40 chr6 121552189 121552265 -60862977 + (TAAA)n Simple_repeat Simple_repeat 2 74 0 229 311 95 7 chr6 121552422 121552570 -60862672 + L1M4 LINE L1 5072 5232 -914 353 83 0 0 chr6 121552890 121552938 -60862304 + Alu SINE Alu 1 48 -252 213 340 116 20 chr6 121552940 121553087 -60862155 + L2 LINE L2 2656 2816 -498 1053 113 0 6 chr6 121553208 121553368 -60861874 - AluSg/x SINE Alu 0 310 152 7657 256 42 48 chr6 121553479 121558161 -60857081 - L1 LINE L1 -2057 4293 2 1017 77 26 0 chr6 121558331 121558487 -60856755 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 225 0 0 0 chr6 121558491 121558516 -60856726 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 * 409 95 0 27 chr6 121558514 121558588 -60856654 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 627 262 100 37 chr6 121559725 121559996 -60855246 - MLT1J2 LTR MaLR 0 450 163 5124 128 40 1 chr6 121560003 121560810 -60854432 + L1PA14 LINE L1 5322 6159 -2 779 233 76 81 chr6 121560851 121561112 -60854130 + MLT1E3 LTR MaLR 282 543 -81 1729 130 104 7 chr6 121561112 121561382 -60853860 - AluSg SINE Alu -10 300 5 779 233 76 81 chr6 121561382 121561395 -60853847 + MLT1E3 LTR MaLR 543 555 -69 2133 119 3 0 chr6 121561395 121561689 -60853553 - AluSc SINE Alu -12 297 3 779 233 76 81 chr6 121561689 121561757 -60853485 + MLT1E3 LTR MaLR 555 623 -1 488 261 49 14 chr6 121561758 121561900 -60853342 - MLT1J2 LTR MaLR -288 162 16 839 368 76 38 chr6 121562509 121563493 -60851749 + L2 LINE L2 2246 3272 0 22 35 0 0 chr6 121563704 121563733 -60851509 + AT_rich Low_complexity Low_complexity 1 29 0 301 176 12 12 chr6 121564291 121564376 -60850866 + GA-rich Low_complexity Low_complexity 2 86 0 234 310 17 26 chr6 121566162 121566278 -60848964 + MIR SINE MIR 148 262 0 252 346 13 0 chr6 121566430 121566583 -60848659 + (TA)n Simple_repeat Simple_repeat 1 155 0 21 0 0 0 chr6 121566848 121566869 -60848373 + AT_rich Low_complexity Low_complexity 1 21 0 254 281 156 0 chr6 121567262 121567358 -60847884 - MIR SINE MIR -21 241 131 234 256 8 23 chr6 121567583 121567712 -60847530 + CT-rich Low_complexity Low_complexity 2 128 0 29 70 0 0 chr6 121568060 121568117 -60847125 + AT_rich Low_complexity Low_complexity 1 57 0 249 358 126 14 chr6 121568202 121568495 -60846747 + L2 LINE L2 2511 2836 -478 628 219 97 34 chr6 121568599 121568837 -60846405 + MER112 DNA MER1_type 8 260 0 525 323 36 27 chr6 121568838 121569061 -60846181 + MIR SINE MIR 12 236 -26 200 154 19 0 chr6 121569351 121569403 -60845839 + (CA)n Simple_repeat Simple_repeat 2 54 0 295 280 17 68 chr6 121569508 121569626 -60845616 + L2 LINE L2 3169 3280 -33 387 0 0 0 chr6 121570810 121570853 -60844389 + (TG)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr6 121572272 121572293 -60842949 + AT_rich Low_complexity Low_complexity 1 21 0 364 335 92 6 chr6 121572341 121572518 -60842724 - MIR SINE MIR -58 204 13 1460 178 55 7 chr6 121572603 121572896 -60842346 - AluJo SINE Alu 0 312 6 200 181 35 14 chr6 121574595 121574739 -60840503 + (TA)n Simple_repeat Simple_repeat 1 147 0 373 291 24 0 chr6 121575072 121575199 -60840043 + L2 LINE L2 3117 3246 -67 42540 34 21 1 chr6 121575546 121581572 -60833670 + L1PA2 LINE L1 1 6151 -4 240 258 72 10 chr6 121581665 121581762 -60833480 + L1ME4a LINE L1 5961 6063 -58 411 295 11 78 chr6 121582423 121582694 -60832548 - L2 LINE L2 -903 2411 2159 419 319 151 24 chr6 121584165 121584416 -60830826 - L3 LINE CR1 -3 1574 1292 286 310 134 32 chr6 121584820 121585036 -60830206 + MIR SINE MIR 20 257 -5 277 254 0 17 chr6 121585251 121585310 -60829932 + MIR SINE MIR 89 146 -62 3116 183 94 19 chr6 121585371 121585796 -60829446 - L1MA9 LINE L1 -131 6181 5684 1204 201 141 0 chr6 121585796 121586059 -60829183 + AluJo SINE Alu 1 300 -2 3116 183 94 19 chr6 121586059 121586317 -60828925 - L1MA9 LINE L1 -628 5684 5447 2295 178 41 4 chr6 121586315 121586813 -60828429 + L1MA9 LINE L1 4898 5415 -748 * 261 219 27 14 chr6 121586830 121586903 -60828339 - L1MC5 LINE L1 -49 7912 7839 235 356 106 15 chr6 121588109 121588241 -60827001 + MIR SINE MIR 114 257 -5 555 174 17 9 chr6 121589692 121589807 -60825435 + MER53 DNA DNA 74 189 0 770 294 0 9 chr6 121590167 121590378 -60824864 - MIR SINE MIR -51 211 3 22 35 0 0 chr6 121591179 121591208 -60824034 + AT_rich Low_complexity Low_complexity 1 29 0 36 70 0 0 chr6 121591310 121591381 -60823861 + AT_rich Low_complexity Low_complexity 1 71 0 391 309 60 0 chr6 121591941 121592090 -60823152 - MIR SINE MIR -13 249 92 338 364 9 0 chr6 121592220 121592330 -60822912 - L3 LINE CR1 -426 1151 1041 6367 71 21 2 chr6 121592720 121593808 -60821434 - L1PA7 LINE L1 -34 6120 5020 4308 106 8 0 chr6 121593808 121594460 -60820782 + L1P LINE L1 4251 4907 -1239 226 245 11 11 chr6 121595192 121595286 -60819956 + GA-rich Low_complexity Low_complexity 1 94 0 242 263 12 12 chr6 121595838 121595918 -60819324 + (TA)n Simple_repeat Simple_repeat 2 81 0 2614 174 19 62 chr6 121595996 121596564 -60818678 - MER44D DNA MER2_type -3 602 4 1049 140 23 18 chr6 121599510 121599681 -60815561 - AluSg/x SINE Alu -20 292 121 641 229 153 46 chr6 121599729 121599991 -60815251 + L2 LINE L2 3024 3313 0 265 215 25 146 chr6 121600269 121600427 -60814815 - MLT1H LTR MaLR 0 549 411 182 289 0 82 chr6 121601562 121601659 -60813583 + L2 LINE L2 1003 1091 -2223 26 0 0 0 chr6 121601968 121601994 -60813248 + AT_rich Low_complexity Low_complexity 1 26 0 217 337 0 11 chr6 121602802 121602894 -60812348 + T-rich Low_complexity Low_complexity 5 95 0 432 37 0 0 chr6 121602943 121602997 -60812245 + (GA)n Simple_repeat Simple_repeat 1 54 0 336 272 0 12 chr6 121603413 121603494 -60811748 + MIR SINE MIR 71 150 -112 923 290 128 42 chr6 121604684 121605160 -60810082 + LTR33A LTR ERVL 2 518 -5 2181 56 7 4 chr6 121605847 121606117 -60809125 + AluY SINE Alu 35 305 -6 261 155 42 28 chr6 121606458 121606529 -60808713 - MIR SINE MIR -97 165 94 607 342 98 42 chr6 121606931 121607572 -60807670 - L3 LINE CR1 -109 1468 792 269 200 0 0 chr6 121607633 121607683 -60807559 + MLT1J2 LTR MaLR 23 72 -378 2099 196 34 29 chr6 121607687 121608135 -60807107 - MLT1C LTR MaLR -7 460 11 21 36 0 0 chr6 121608135 121608163 -60807079 + AT_rich Low_complexity Low_complexity 1 28 0 5331 104 23 0 chr6 121608171 121609221 -60806021 - L1PA11 LINE L1 -4 6170 5080 417 241 134 52 chr6 121609247 121609467 -60805775 + MLT1J2 LTR MaLR 66 329 -121 217 323 42 62 chr6 121609543 121609639 -60805603 + MIR SINE MIR 20 113 -149 774 323 132 21 chr6 121609679 121610368 -60804874 - L2 LINE L2 -6 3307 2543 255 259 0 0 chr6 121610396 121610454 -60804788 + (TAA)n Simple_repeat Simple_repeat 2 59 0 183 205 0 0 chr6 121611202 121611241 -60804001 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 527 235 144 110 chr6 121611694 121611751 -60803491 - MLT1F1 LTR MaLR 0 595 541 532 116 9 80 chr6 121611751 121611863 -60803379 + L1MA8 LINE L1 6184 6287 -4 527 235 144 110 chr6 121611863 121612201 -60803041 - MLT1F1 LTR MaLR -54 541 177 183 80 0 0 chr6 121612201 121612226 -60803016 + (GA)n Simple_repeat Simple_repeat 1 25 0 6082 229 118 24 chr6 121612257 121614136 -60801106 - L1MC3 LINE L1 -8 7777 5722 711 232 18 0 chr6 121614144 121614308 -60800934 - MLT1F1 LTR MaLR -400 167 1 1411 252 77 65 chr6 121614383 121614593 -60800649 - MLT1E3 LTR MaLR -5 619 413 180 97 0 0 chr6 121614593 121614624 -60800618 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1411 252 77 65 chr6 121614624 121615025 -60800217 - MLT1E3 LTR MaLR -211 413 1 312 256 31 62 chr6 121615271 121615431 -60799811 + HAL1b LINE L1 759 913 -435 971 260 5 5 chr6 121615467 121615690 -60799552 - MER58A DNA MER1_type -1 223 1 327 285 80 44 chr6 121615779 121616028 -60799214 + HAL1 LINE L1 2246 2503 -4 23 33 0 0 chr6 121616917 121616947 -60798295 + AT_rich Low_complexity Low_complexity 1 30 0 350 295 56 73 chr6 121617308 121617542 -60797700 - MIR SINE MIR 0 262 33 202 330 121 83 chr6 121618336 121618991 -60796251 + L2 LINE L2 2599 3266 -6 628 315 100 0 chr6 121621389 121621630 -60793612 + MLT1J1 LTR MaLR 2 266 -180 185 143 0 102 chr6 121621782 121621831 -60793411 - MIR SINE MIR -107 155 112 463 246 18 9 chr6 121621928 121622038 -60793204 - L2 LINE L2 0 3313 3203 25 0 0 0 chr6 121622985 121623010 -60792232 + AT_rich Low_complexity Low_complexity 1 25 0 409 319 123 0 chr6 121623301 121623464 -60791778 - MER5A DNA MER1_type -6 183 1 247 292 151 64 chr6 121624058 121624356 -60790886 + L3 LINE CR1 1166 1489 -88 217 135 39 0 chr6 121624973 121625025 -60790217 + GA-rich Low_complexity Low_complexity 1 54 0 33 0 0 0 chr6 121625255 121625288 -60789954 + AT_rich Low_complexity Low_complexity 1 33 0 2754 227 95 60 chr6 121625299 121626152 -60789090 + L1MCb LINE L1 750 1571 -5174 2417 53 3 34 chr6 121626152 121626434 -60788808 + AluY SINE Alu 1 273 -38 737 31 10 0 chr6 121626434 121626530 -60788712 + (TAAAA)n Simple_repeat Simple_repeat 2 98 0 2417 53 3 34 chr6 121626530 121626567 -60788675 + AluY SINE Alu 273 310 -1 2754 227 95 60 chr6 121626567 121627467 -60787775 + L1MCb LINE L1 1571 2769 -3976 3892 172 31 21 chr6 121627603 121628323 -60786919 - MER44D DNA MER2_type -6 599 1 212 390 19 26 chr6 121628518 121628672 -60786570 + L3 LINE CR1 1353 1505 -72 413 329 78 55 chr6 121628871 121629484 -60785758 + L2 LINE L2 2679 3313 0 1323 181 40 27 chr6 121630342 121630735 -60784507 - MER66A LTR ERV1 -39 439 8 280 185 46 15 chr6 121631975 121632040 -60783202 - MIR SINE MIR 0 262 196 21 57 0 0 chr6 121632741 121632776 -60782466 + AT_rich Low_complexity Low_complexity 1 35 0 469 252 105 19 chr6 121633814 121634080 -60781162 - MER114 LTR ERV -127 521 233 21 0 0 0 chr6 121634122 121634143 -60781099 + AT_rich Low_complexity Low_complexity 1 21 0 21666 84 7 3 chr6 121634144 121638106 -60777136 + L1PA2 LINE L1 2176 6149 -6 6148 71 4 1 chr6 121638114 121638915 -60776327 + L1PA8 LINE L1 5352 6154 -18 186 43 0 0 chr6 121638917 121638940 -60776302 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 441 319 13 4 chr6 121638940 121639166 -60776076 - MER114 LTR ERV -420 228 1 31 99 0 0 chr6 121639286 121639387 -60775855 + AT_rich Low_complexity Low_complexity 1 101 0 214 198 233 35 chr6 121639558 121639644 -60775598 - MIR SINE MIR -108 154 52 2315 237 137 43 chr6 121640150 121640885 -60774357 + MER21B LTR ERV1 2 805 -58 2169 94 4 0 chr6 121641426 121641701 -60773541 + AluSq SINE Alu 1 276 -37 314 330 51 33 chr6 121641718 121641991 -60773251 - L1MEc LINE L1 -4579 1817 1540 416 172 50 81 chr6 121644706 121644789 -60770453 + MLT1B LTR MaLR 1 80 -310 848 175 0 26 chr6 121644789 121644982 -60770260 - MER52C LTR ERV1 0 1278 1073 * 3287 152 30 28 chr6 121644979 121645649 -60769593 - MER52C LTR ERV1 -607 671 1 1754 169 19 0 chr6 121645649 121645962 -60769280 + MLT1B LTR MaLR 72 390 0 25 31 0 0 chr6 121646577 121646609 -60768633 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 121646754 121646779 -60768463 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 121648809 121648837 -60766405 + AT_rich Low_complexity Low_complexity 1 28 0 593 336 80 28 chr6 121649163 121649913 -60765329 + HAL1 LINE L1 961 1749 -758 2145 79 0 0 chr6 121650965 121651255 -60763987 + L1PA6 LINE L1 5863 6152 -2 439 216 78 0 chr6 121651519 121651621 -60763621 - Charlie4 DNA MER1_type -34 1927 1818 204 40 0 0 chr6 121651932 121651957 -60763285 + (TCTCTG)n Simple_repeat Simple_repeat 4 28 0 2261 139 32 51 chr6 121652645 121652879 -60762363 - MSTB LTR MaLR -1 425 201 2219 110 0 3 chr6 121652879 121653178 -60762064 - AluSg1 SINE Alu -11 298 1 2261 139 32 51 chr6 121653178 121653375 -60761867 - MSTB LTR MaLR -225 201 2 1336 327 130 24 chr6 121653942 121655008 -60760234 + L2 LINE L2 1799 2977 -337 261 57 0 0 chr6 121655212 121655247 -60759995 + (CA)n Simple_repeat Simple_repeat 1 35 0 452 337 26 5 chr6 121655372 121655565 -60759677 - MIR SINE MIR -1 261 65 23 54 0 0 chr6 121656262 121656299 -60758943 + AT_rich Low_complexity Low_complexity 1 37 0 1717 155 7 21 chr6 121656665 121656955 -60758287 + AluJo SINE Alu 7 292 -20 183 293 24 49 chr6 121657345 121657427 -60757815 - MER5B DNA MER1_type -48 130 51 211 245 20 0 chr6 121657466 121657515 -60757727 + L2 LINE L2 3216 3265 -7 473 269 40 27 chr6 121658040 121658189 -60757053 + MIR3 SINE MIR 50 200 -8 15568 149 40 8 chr6 121658683 121661021 -60754221 - Tigger4(Zombi) DNA MER2_type 0 2731 294 1332 210 52 11 chr6 121661021 121661307 -60753935 + AluJo SINE Alu 1 298 -14 15568 149 40 8 chr6 121661307 121661612 -60753630 - Tigger4(Zombi) DNA MER2_type -2437 294 1 255 151 94 0 chr6 121661571 121661624 -60753618 + MER46A DNA MER2_type 103 160 -76 * 22 56 0 0 chr6 121662320 121662356 -60752886 + AT_rich Low_complexity Low_complexity 1 36 0 2023 175 28 26 chr6 121662386 121662542 -60752700 - MLT1B LTR MaLR -1 389 235 1651 193 34 8 chr6 121662542 121662894 -60752348 - MLT1A1 LTR MaLR 0 365 5 2023 175 28 26 chr6 121662894 121663125 -60752117 - MLT1B LTR MaLR -155 235 1 489 267 96 57 chr6 121663125 121663553 -60751689 - L1ME LINE L1 -362 5759 5316 25 83 0 0 chr6 121663635 121663695 -60751547 + AT_rich Low_complexity Low_complexity 1 60 0 3853 203 65 12 chr6 121664213 121665480 -60749762 - L1MA9 LINE L1 -94 6218 4876 228 170 38 38 chr6 121665480 121665533 -60749709 + CT-rich Low_complexity Low_complexity 2 54 0 1419 185 7 36 chr6 121665535 121665816 -60749426 - AluJo SINE Alu -32 280 8 421 214 97 0 chr6 121665818 121665921 -60749321 - L1MA9 LINE L1 -1269 4877 4765 1800 282 91 22 chr6 121665992 121667359 -60747883 + L1ME LINE L1 17 1503 -4758 393 250 23 0 chr6 121667362 121667450 -60747792 + L1MDa LINE L1 7 96 -6444 186 103 0 0 chr6 121667450 121667479 -60747763 + (TG)n Simple_repeat Simple_repeat 2 30 0 1379 209 16 71 chr6 121667586 121667954 -60747288 + L1MDa LINE L1 119 466 -6074 465 292 64 49 chr6 121668259 121668887 -60746355 - L1MEc LINE L1 -4745 1618 1007 334 109 250 0 chr6 121670239 121670303 -60744939 + MADE1 DNA Mariner 1 80 0 678 314 27 0 chr6 121670584 121670772 -60744470 - MIR SINE MIR -69 193 1 1767 167 18 56 chr6 121672662 121673057 -60742185 - L1MA9 LINE L1 0 6312 5933 201 156 0 0 chr6 121673334 121673366 -60741876 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 7367 41 4 2 chr6 121673881 121675056 -60740186 + L1PA5 LINE L1 4978 6154 0 538 261 171 6 chr6 121675303 121675479 -60739763 + MIR SINE MIR 57 261 -1 26 50 0 0 chr6 121676580 121676620 -60738622 + AT_rich Low_complexity Low_complexity 1 40 0 201 167 0 0 chr6 121678285 121678321 -60736921 + A-rich Low_complexity Low_complexity 1 36 0 212 173 12 37 chr6 121678496 121678577 -60736665 + CT-rich Low_complexity Low_complexity 2 80 0 452 320 135 9 chr6 121679172 121679394 -60735848 + MIR SINE MIR 3 252 -10 42245 32 21 1 chr6 121679561 121685515 -60729727 - L1PA2 LINE L1 0 6155 79 492 327 14 19 chr6 121685881 121686092 -60729150 - MIR SINE MIR 0 262 53 12354 176 33 40 chr6 121686383 121686790 -60728452 + Tigger1 DNA MER2_type 4 412 -2006 2098 134 0 7 chr6 121686790 121687096 -60728146 + AluSc SINE Alu 1 304 -5 12354 176 33 40 chr6 121687096 121688997 -60726245 + Tigger1 DNA MER2_type 412 2298 -120 2358 80 0 0 chr6 121688997 121689296 -60725946 - AluY SINE Alu -12 299 1 12354 176 33 40 chr6 121689296 121689417 -60725825 + Tigger1 DNA MER2_type 2298 2418 0 27 62 0 0 chr6 121690191 121690239 -60725003 + AT_rich Low_complexity Low_complexity 1 48 0 268 218 282 27 chr6 121690351 121690461 -60724781 + MIR SINE MIR 84 221 -41 1852 92 84 0 chr6 121690735 121691040 -60724202 + AluSx SINE Alu 1 327 0 211 357 62 16 chr6 121691045 121691174 -60724068 + L3 LINE CR1 674 808 -769 234 297 136 0 chr6 121691340 121691458 -60723784 - MLT1L LTR MaLR -32 583 450 1556 226 41 0 chr6 121691468 121691831 -60723411 + L1ME1 LINE L1 5783 6160 -6 459 299 122 55 chr6 121691854 121692198 -60723044 - MLT1L LTR MaLR -177 438 72 2447 146 9 43 chr6 121692296 121692735 -60722507 - MSTB LTR MaLR 0 426 3 229 270 90 36 chr6 121692938 121693049 -60722193 + L3 LINE CR1 1154 1270 -307 196 338 113 40 chr6 121693088 121693239 -60722003 + L3 LINE CR1 1371 1532 -45 306 0 0 0 chr6 121693827 121693861 -60721381 + (TTA)n Simple_repeat Simple_repeat 1 34 0 216 353 16 71 chr6 121695321 121695505 -60719737 - MER5B DNA MER1_type -1 177 4 197 310 39 62 chr6 121695725 121695854 -60719388 - MIR3 SINE MIR -48 160 35 520 157 9 9 chr6 121696271 121696386 -60718856 + CT-rich Low_complexity Low_complexity 2 116 0 21 36 0 0 chr6 121697169 121697197 -60718045 + AT_rich Low_complexity Low_complexity 1 28 0 197 179 0 18 chr6 121697680 121697736 -60717506 + (CA)n Simple_repeat Simple_repeat 2 56 0 213 222 0 0 chr6 121697980 121698025 -60717217 + (CATA)n Simple_repeat Simple_repeat 3 47 0 273 250 273 23 chr6 121698112 121698244 -60716998 + MIR SINE MIR 4 168 -94 2277 127 74 0 chr6 121698309 121698648 -60716594 + THE1B LTR MaLR 1 364 0 231 331 60 23 chr6 121698710 121698843 -60716399 - LTR33 LTR ERVL 0 521 384 204 40 0 0 chr6 121699596 121699621 -60715621 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 582 336 78 51 chr6 121699895 121700669 -60714573 + L2 LINE L2 2518 3312 -1 1088 349 39 17 chr6 121701275 121701682 -60713560 + MER115 DNA AcHobo 17 432 -261 2237 153 42 38 chr6 121702684 121703062 -60712180 + MSTA LTR MaLR 1 383 -45 2133 125 0 0 chr6 121703062 121703358 -60711884 + AluSg SINE Alu 2 297 -13 2237 153 42 38 chr6 121703358 121703404 -60711838 + MSTA LTR MaLR 383 427 -1 23 68 0 0 chr6 121704409 121704453 -60710789 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr6 121705481 121705506 -60709736 + (CA)n Simple_repeat Simple_repeat 2 26 0 28 61 0 0 chr6 121707438 121707487 -60707755 + AT_rich Low_complexity Low_complexity 1 49 0 1040 207 121 137 chr6 121709701 121709799 -60705443 + MLT1C LTR MaLR 1 99 -368 2042 133 0 0 chr6 121709799 121710092 -60705150 + AluSq SINE Alu 21 313 0 1040 207 121 137 chr6 121710092 121710506 -60704736 + MLT1C LTR MaLR 99 467 0 318 276 35 0 chr6 121710945 121711032 -60704210 + L1MC4 LINE L1 6614 6703 -1339 414 0 0 0 chr6 121711032 121711078 -60704164 + (TA)n Simple_repeat Simple_repeat 2 47 0 371 330 0 17 chr6 121711811 121711929 -60703313 - MIR SINE MIR -63 145 30 373 335 154 10 chr6 121712054 121712347 -60702895 - L1ME4a LINE L1 -95 6026 5692 525 265 86 19 chr6 121712465 121712627 -60702615 + MIR SINE MIR 80 252 -10 341 289 13 0 chr6 121712819 121712895 -60702347 + L2 LINE L2 3204 3280 -33 24 0 0 0 chr6 121713890 121713914 -60701328 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 121713961 121713996 -60701246 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr6 121714688 121714717 -60700525 + AT_rich Low_complexity Low_complexity 1 29 0 989 269 8 4 chr6 121715044 121715282 -60699960 + MER8 DNA MER2_type 1 239 0 23 0 0 0 chr6 121715324 121715347 -60699895 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr6 121715467 121715496 -60699746 + AT_rich Low_complexity Low_complexity 1 29 0 566 88 0 11 chr6 121715864 121715955 -60699287 + (CA)n Simple_repeat Simple_repeat 2 91 0 27 29 0 0 chr6 121716025 121716059 -60699183 + AT_rich Low_complexity Low_complexity 1 34 0 2343 49 0 7 chr6 121716172 121716484 -60698758 - AluY SINE Alu 0 310 1 1194 278 92 20 chr6 121716487 121716959 -60698283 + MLT1H LTR MaLR 35 567 0 243 0 0 0 chr6 121717079 121717106 -60698136 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 726 314 89 43 chr6 121718379 121718841 -60696401 - L2 LINE L2 -4 3309 2827 213 211 0 0 chr6 121718874 121718931 -60696311 + (TA)n Simple_repeat Simple_repeat 2 58 0 233 253 0 27 chr6 121719104 121719179 -60696063 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 21 0 0 0 chr6 121719490 121719511 -60695731 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr6 121719568 121719593 -60695649 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 310 329 21 14 chr6 121719638 121719778 -60695464 - HAL1b LINE L1 -703 645 505 1809 222 8 3 chr6 121719805 121720157 -60695085 + MLT1A1 LTR MaLR 12 365 0 353 279 7 22 chr6 121720179 121720315 -60694927 - HAL1b LINE L1 -897 451 318 7372 33 0 11 chr6 121720624 121721605 -60693637 + L1PA5 LINE L1 5184 6154 0 25 0 0 0 chr6 121723248 121723273 -60691969 + AT_rich Low_complexity Low_complexity 1 25 0 12002 80 15 2 chr6 121723566 121725964 -60689278 + L1PA7 LINE L1 3692 6120 -34 802 329 78 19 chr6 121726354 121726725 -60688517 + L3 LINE CR1 1041 1433 -144 328 234 78 43 chr6 121726762 121726903 -60688339 + MIR SINE MIR 73 218 -44 1869 147 137 13 chr6 121726915 121727296 -60687946 + MSTA LTR MaLR 1 428 0 379 287 20 0 chr6 121727552 121727653 -60687589 + MER33 DNA MER1_type 33 135 -189 217 297 58 29 chr6 121727655 121727793 -60687449 - L2 LINE L2 -432 2882 2741 320 255 61 126 chr6 121728011 121728242 -60687000 - L2 LINE L2 -723 2591 2376 922 185 26 57 chr6 121728312 121728539 -60686703 - MER96B DNA MER1_type? 0 417 198 29 70 0 0 chr6 121728583 121728640 -60686602 + AT_rich Low_complexity Low_complexity 1 57 0 201 301 71 18 chr6 121728670 121728783 -60686459 + MER91C DNA MER1_type 22 140 0 254 275 22 11 chr6 121728895 121728986 -60686256 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 339 113 0 0 chr6 121728986 121729039 -60686203 + (GA)n Simple_repeat Simple_repeat 2 54 0 545 329 81 14 chr6 121729057 121729279 -60685963 - MIR SINE MIR -4 258 22 22 0 0 0 chr6 121729416 121729438 -60685804 + AT_rich Low_complexity Low_complexity 1 22 0 966 187 83 35 chr6 121729988 121730359 -60684883 - L1MD2 LINE L1 -274 5968 5494 * 1679 231 40 0 chr6 121730355 121730731 -60684511 + L1MD2 LINE L1 5947 6337 -22 32 43 0 0 chr6 121730966 121731012 -60684230 + AT_rich Low_complexity Low_complexity 1 46 0 202 139 23 0 chr6 121731159 121731202 -60684040 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 6629 172 73 1 chr6 121731856 121732224 -60683018 + L1PA12 LINE L1 4063 4403 -1765 1596 165 76 31 chr6 121732224 121732581 -60682661 - THE1C LTR MaLR 0 375 3 9197 142 7 40 chr6 121732582 121734212 -60681030 - THE1C-int LTR MaLR -2 1578 4 1703 156 63 36 chr6 121734215 121734580 -60680662 - THE1C LTR MaLR 0 375 1 6629 172 73 1 chr6 121734580 121736258 -60678984 + L1PA12 LINE L1 4404 6167 -1 2093 61 7 41 chr6 121736260 121736603 -60678639 + AluY SINE Alu 1 333 0 692 131 0 0 chr6 121736831 121736930 -60678312 + U6 snRNA snRNA 1 99 -8 1786 210 77 5 chr6 121736939 121737378 -60677864 + L1P LINE L1 2128 2598 -3548 * 5173 131 48 20 chr6 121737366 121737723 -60677519 + L1PA15 LINE L1 5128 5473 -692 2127 113 0 3 chr6 121737723 121738024 -60677218 + AluY SINE Alu 1 300 -11 5173 131 48 20 chr6 121738024 121738677 -60676565 + L1PA15 LINE L1 5473 6159 -6 38 75 0 0 chr6 121738678 121738758 -60676484 + AT_rich Low_complexity Low_complexity 1 80 0 192 111 0 0 chr6 121738864 121738900 -60676342 + (T)n Simple_repeat Simple_repeat 1 36 0 192 182 0 0 chr6 121739196 121739240 -60676002 + T-rich Low_complexity Low_complexity 1 44 0 5413 148 48 7 chr6 121739241 121740203 -60675039 - L1MA8 LINE L1 -3 6288 5282 195 100 0 0 chr6 121740203 121740233 -60675009 + (TTG)n Simple_repeat Simple_repeat 1 30 0 5413 148 48 7 chr6 121740233 121740264 -60674978 - L1MA8 LINE L1 -1009 5282 5254 2006 105 85 26 chr6 121740270 121740612 -60674630 + THE1B LTR MaLR 3 364 0 10979 103 22 3 chr6 121740612 121742163 -60673079 + THE1B-int LTR MaLR 1 1580 0 1725 117 142 35 chr6 121742168 121742484 -60672758 + THE1B LTR MaLR 15 364 0 2552 148 2 18 chr6 121742485 121742923 -60672319 - L1MA8 LINE L1 -893 5253 4823 1094 266 32 58 chr6 121743374 121743643 -60671599 + L1MEc LINE L1 1501 1751 -4645 1029 222 0 0 chr6 121743643 121743850 -60671392 + MER6B DNA MER2_type 2 208 -2 1094 266 32 58 chr6 121743850 121744113 -60671129 + L1MEc LINE L1 1751 2019 -4377 1010 208 35 9 chr6 121744810 121745036 -60670206 - MER96B DNA MER1_type? -182 235 4 195 42 0 0 chr6 121745101 121745125 -60670117 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1910 160 51 0 chr6 121745912 121746243 -60668999 + MER7A DNA MER2_type 1 346 0 251 234 9 37 chr6 121748573 121748680 -60666562 + (TGAA)n Simple_repeat Simple_repeat 4 107 0 426 357 52 5 chr6 121750140 121750350 -60664892 - MIR SINE MIR -12 250 31 25 0 0 0 chr6 121752548 121752573 -60662669 + AT_rich Low_complexity Low_complexity 1 25 0 290 255 83 83 chr6 121752922 121753079 -60662163 - MIR3 SINE MIR -16 192 36 303 381 53 19 chr6 121753107 121753372 -60661870 - L2 LINE L2 -1057 2257 1984 235 216 105 92 chr6 121753404 121753557 -60661685 + L2 LINE L2 1990 2144 -1170 1372 152 66 8 chr6 121753558 121753815 -60661427 - L1PA16 LINE L1 0 6166 5895 43 92 0 0 chr6 121753876 121753996 -60661246 + AT_rich Low_complexity Low_complexity 1 120 0 3161 145 70 3 chr6 121753997 121754570 -60660672 - L1PA15 LINE L1 -8 6157 5547 535 301 79 15 chr6 121754577 121754843 -60660399 + L2 LINE L2 2131 2413 -901 181 222 20 141 chr6 121754904 121755003 -60660239 - L2 LINE L2 -193 3079 2993 641 336 87 55 chr6 121755025 121755580 -60659662 + L2 LINE L2 2443 3043 -270 2247 91 3 0 chr6 121755580 121755877 -60659365 - AluY SINE Alu -2 309 12 641 336 87 55 chr6 121755877 121756065 -60659177 + L2 LINE L2 3043 3223 -90 2313 81 0 0 chr6 121756984 121757279 -60657963 + AluY SINE Alu 1 295 -16 1020 30 0 38 chr6 121758176 121758309 -60656933 - L1PA3 LINE L1 -1 6154 6027 1085 184 14 0 chr6 121758495 121758713 -60656529 + L1MA5A LINE L1 6073 6293 -4 207 311 75 47 chr6 121759412 121759518 -60655724 + L2 LINE L2 3182 3290 -23 26 30 0 0 chr6 121759650 121759683 -60655559 + AT_rich Low_complexity Low_complexity 1 33 0 1891 178 68 12 chr6 121760918 121761318 -60653924 - L1MB3 LINE L1 0 6183 5762 471 346 11 5 chr6 121761521 121761706 -60653536 + MIR SINE MIR 43 228 -34 332 322 15 18 chr6 121762220 121762366 -60652876 - MIR3 SINE MIR -7 201 57 28 0 0 0 chr6 121762682 121762710 -60652532 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 121764018 121764047 -60651195 + AT_rich Low_complexity Low_complexity 1 29 0 2188 121 0 0 chr6 121764047 121764353 -60650889 - AluSx SINE Alu -6 306 1 26 0 0 0 chr6 121765373 121765399 -60649843 + AT_rich Low_complexity Low_complexity 1 26 0 678 337 99 19 chr6 121765490 121765953 -60649289 - L2 LINE L2 -7 3306 2807 27 0 0 0 chr6 121766047 121766074 -60649168 + AT_rich Low_complexity Low_complexity 1 27 0 304 292 15 29 chr6 121766468 121766605 -60648637 + LTR16C LTR ERVL 357 491 0 341 312 10 0 chr6 121766998 121767131 -60648111 - L1MB3 LINE L1 -338 5783 5647 1475 176 9 27 chr6 121767133 121767462 -60647780 + MER33 DNA MER1_type 2 324 0 228 271 153 0 chr6 121767473 121767558 -60647684 + MER5A DNA MER1_type 4 101 -88 31 0 0 0 chr6 121768289 121768320 -60646922 + AT_rich Low_complexity Low_complexity 1 31 0 2433 74 0 0 chr6 121768823 121769120 -60646122 - AluY SINE Alu -14 297 1 2340 82 3 0 chr6 121770954 121771248 -60643994 + AluY SINE Alu 6 300 -11 239 228 0 0 chr6 121771593 121771650 -60643592 + CT-rich Low_complexity Low_complexity 2 58 0 27 29 0 0 chr6 121772246 121772280 -60642962 + AT_rich Low_complexity Low_complexity 1 34 0 406 264 56 56 chr6 121773050 121773228 -60642014 + MER5B DNA MER1_type 1 178 0 282 73 0 0 chr6 121773511 121773552 -60641690 + (CA)n Simple_repeat Simple_repeat 2 42 0 393 296 56 19 chr6 121773631 121773901 -60641341 + L1M4 LINE L1 2172 2451 -3695 263 323 32 11 chr6 121773907 121774000 -60641242 - MER5B DNA MER1_type -82 96 2 536 282 76 54 chr6 121774023 121774470 -60640772 + L1M4 LINE L1 4359 4815 -1331 271 254 91 45 chr6 121774729 121774839 -60640403 - L2 LINE L2 0 3313 3199 186 43 0 0 chr6 121774847 121774870 -60640372 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 279 299 52 0 chr6 121776897 121776994 -60638248 - MIR3 SINE MIR -6 202 101 475 293 88 0 chr6 121778116 121778297 -60636945 - MIR SINE MIR -9 253 57 1847 87 0 62 chr6 121779417 121779693 -60635549 + AluY SINE Alu 50 308 -3 236 75 0 25 chr6 121779698 121779738 -60635504 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 254 104 0 42 chr6 121780274 121780322 -60634920 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 4704 190 71 15 chr6 121780326 121780794 -60634448 - Tigger6a DNA MER2_type -514 1083 643 2078 87 13 36 chr6 121780794 121781103 -60634139 - AluY SINE Alu -9 302 1 4704 190 71 15 chr6 121781103 121781653 -60633589 - Tigger6a DNA MER2_type -954 643 8 25 0 0 0 chr6 121781699 121781724 -60633518 + AT_rich Low_complexity Low_complexity 1 25 0 1781 216 12 0 chr6 121783617 121783959 -60631283 + MER7A DNA MER2_type 3 346 0 9497 208 61 37 chr6 121784019 121790436 -60624806 + L1MC1 LINE L1 2 6613 0 742 264 59 38 chr6 121790780 121791025 -60624217 + L1M4 LINE L1 4688 4926 -1220 2912 143 21 12 chr6 121791025 121791509 -60623733 + LTR45B LTR ERV1 2 489 0 742 264 59 38 chr6 121791509 121791737 -60623505 + L1M4 LINE L1 4926 5171 -975 2723 148 51 1 chr6 121791831 121792624 -60622618 - L1PBa LINE L1 -3593 3269 2438 * 5610 189 174 5 chr6 121792622 121793984 -60621258 - L1PBa LINE L1 -4643 2220 629 3600 140 12 5 chr6 121793984 121794784 -60620458 + L1PB1 LINE L1 4988 5791 -360 316 167 0 118 chr6 121794812 121794914 -60620328 - L1MC4 LINE L1 -1340 6702 6613 218 217 0 0 chr6 121794919 121794965 -60620277 + (TA)n Simple_repeat Simple_repeat 2 47 0 308 233 0 87 chr6 121794973 121795076 -60620166 + L1MC4 LINE L1 6614 6707 -1335 * 343 211 70 53 chr6 121795031 121795122 -60620120 - L1MC4 LINE L1 -1339 6703 6608 2250 120 11 21 chr6 121795122 121795496 -60619746 + L1PB1 LINE L1 5782 6151 0 343 211 70 53 chr6 121795496 121795518 -60619724 - L1MC4 LINE L1 -1434 6608 6588 216 97 0 0 chr6 121795788 121795819 -60619423 + (TG)n Simple_repeat Simple_repeat 2 32 0 419 67 17 0 chr6 121796078 121796138 -60619104 - MADE1 DNA Mariner -19 61 1 329 152 30 0 chr6 121796713 121796779 -60618463 - Charlie4 DNA MER1_type -13 1948 1881 22 35 0 0 chr6 121800401 121800430 -60614812 + AT_rich Low_complexity Low_complexity 1 29 0 209 386 131 14 chr6 121800577 121800722 -60614520 + MIR3 SINE MIR 24 185 -23 357 297 48 0 chr6 121800919 121801068 -60614174 + MIR SINE MIR 41 195 -62 191 352 103 28 chr6 121802477 121802622 -60612620 - L2 LINE L2 -1 3271 3116 297 197 0 0 chr6 121802979 121803040 -60612202 + (TA)n Simple_repeat Simple_repeat 1 61 0 264 109 0 0 chr6 121803040 121803086 -60612156 + LTR66 LTR ERVL 394 439 -171 279 0 0 0 chr6 121803088 121803119 -60612123 + (TA)n Simple_repeat Simple_repeat 2 32 0 1897 122 113 0 chr6 121803389 121803724 -60611518 + MLT1B LTR MaLR 18 390 0 1956 139 126 26 chr6 121804782 121805171 -60610071 - MSTA LTR MaLR 0 428 1 527 283 31 42 chr6 121805669 121805860 -60609382 + MLT1E3 LTR MaLR 55 243 -381 28 29 0 0 chr6 121806047 121806082 -60609160 + AT_rich Low_complexity Low_complexity 1 35 0 281 305 99 53 chr6 121806204 121806335 -60608907 - L2 LINE L2 0 3272 3136 5316 93 4 9 chr6 121806547 121807324 -60607918 - L1PA8 LINE L1 -1123 5023 4251 6850 63 14 3 chr6 121807324 121808464 -60606778 + L1PA8 LINE L1 5020 6170 -2 1246 215 66 54 chr6 121808465 121808800 -60606442 + Charlie2 DNA MER1_type 2142 2471 -391 1929 138 35 0 chr6 121808800 121809089 -60606153 + AluSx SINE Alu 1 299 -13 1246 215 66 54 chr6 121809089 121809128 -60606114 + Charlie2 DNA MER1_type 2471 2508 -354 1147 215 13 115 chr6 121809128 121809589 -60605653 + MLT2D LTR ERVL 1 414 0 1246 215 66 54 chr6 121809589 121809770 -60605472 + Charlie2 DNA MER1_type 2508 2705 -157 938 242 10 0 chr6 121809771 121809965 -60605277 - MER58A DNA MER1_type -1 223 28 481 300 0 6 chr6 121810009 121810169 -60605073 + Charlie2 DNA MER1_type 2704 2862 0 374 367 109 35 chr6 121810235 121811211 -60604031 - L2 LINE L2 -350 2964 1917 359 211 13 13 chr6 121811894 121811970 -60603272 + MLT1I LTR MaLR 310 385 -24 225 65 0 0 chr6 121812110 121812141 -60603101 + (CA)n Simple_repeat Simple_repeat 2 32 0 208 355 99 28 chr6 121812229 121812440 -60602802 - L2 LINE L2 -2413 901 676 1055 224 123 19 chr6 121813303 121813620 -60601622 - MLT1D LTR MaLR -6 499 150 236 346 48 100 chr6 121813636 121814015 -60601227 + L2 LINE L2 2883 3241 -31 363 213 149 81 chr6 121814015 121814250 -60600992 - MER112 DNA MER1_type -8 252 2 253 0 0 0 chr6 121815943 121815975 -60599267 - L1PA6 LINE L1 -7 6147 6116 207 0 0 0 chr6 121816573 121816596 -60598646 + (TG)n Simple_repeat Simple_repeat 2 24 0 1081 272 29 29 chr6 121816834 121817176 -60598066 - MER93a LTR ERV1 0 402 61 225 0 0 0 chr6 121817275 121817317 -60597925 + (TG)n Simple_repeat Simple_repeat 1 67 0 225 0 0 0 chr6 121817317 121817342 -60597900 + (TG)n Simple_repeat Simple_repeat 2 26 0 30 27 0 0 chr6 121818490 121818527 -60596715 + AT_rich Low_complexity Low_complexity 1 37 0 2333 65 0 49 chr6 121818900 121819225 -60596017 + AluSc SINE Alu 1 309 0 460 365 59 21 chr6 121819848 121820086 -60595156 + L2 LINE L2 1093 1339 -1975 1295 258 86 56 chr6 121820119 121820731 -60594511 + L1ME3 LINE L1 5492 6148 -22 * 4034 222 44 13 chr6 121820728 121821698 -60593544 - L1MD2 LINE L1 -10 6349 5350 538 285 129 5 chr6 121821774 121821960 -60593282 + MIR SINE MIR 42 250 -12 595 265 87 15 chr6 121822049 121822245 -60592997 - MIR SINE MIR -38 224 15 1291 349 144 26 chr6 121822246 121823476 -60591766 + L2 LINE L2 1413 2787 -527 23 0 0 0 chr6 121823735 121823758 -60591484 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 121824301 121824323 -60590919 + AT_rich Low_complexity Low_complexity 1 22 0 30 45 0 0 chr6 121824341 121824385 -60590857 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr6 121825346 121825383 -60589859 + AT_rich Low_complexity Low_complexity 1 37 0 1394 223 43 38 chr6 121826256 121826628 -60588614 - MLT1A2 LTR MaLR 0 374 1 593 306 118 14 chr6 121826849 121827332 -60587910 - L1ME LINE L1 -372 5790 5258 185 178 22 0 chr6 121827374 121827419 -60587823 + (TG)n Simple_repeat Simple_repeat 1 46 0 1630 188 42 18 chr6 121827436 121827771 -60587471 + MER2 DNA MER2_type 1 343 -1 4647 119 1 6 chr6 121828113 121828829 -60586413 - L1MA2 LINE L1 0 6304 5592 202 154 0 26 chr6 121828893 121828932 -60586310 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1882 265 25 37 chr6 121828934 121829603 -60585639 - L1ME1 LINE L1 -26 6140 5480 2514 169 13 0 chr6 121830205 121830655 -60584587 + L1MB2 LINE L1 5703 6158 -13 193 333 103 51 chr6 121832288 121832444 -60582798 + MIR SINE MIR 28 191 -71 377 287 42 28 chr6 121832747 121832890 -60582352 - MIR3 SINE MIR -54 154 10 2914 243 39 63 chr6 121833287 121834388 -60580854 + L1MD2 LINE L1 3533 4607 -1539 3225 234 72 54 chr6 121834475 121834632 -60580610 + L1MD2 LINE L1 4985 5138 -1221 2667 81 16 11 chr6 121834632 121835004 -60580238 - THE1C LTR MaLR -1 374 1 3225 234 72 54 chr6 121835004 121836005 -60579237 + L1MD2 LINE L1 5138 6163 -196 2217 122 0 0 chr6 121836005 121836299 -60578943 + AluSg SINE Alu 1 294 -16 3225 234 72 54 chr6 121836299 121836500 -60578742 + L1MD2 LINE L1 6163 6359 0 952 181 13 35 chr6 121836643 121836870 -60578372 - L1M4 LINE L1 -2060 4086 3865 1021 238 85 56 chr6 121836917 121836996 -60578246 + L1ME2 LINE L1 3503 3578 -2568 2242 118 0 9 chr6 121836996 121837311 -60577931 + AluSx SINE Alu 1 312 0 1021 238 85 56 chr6 121837311 121838097 -60577145 + L1ME2 LINE L1 3578 4554 -1592 1462 207 8 55 chr6 121838109 121838510 -60576732 + L1ME2 LINE L1 4645 5026 -1120 2744 214 32 62 chr6 121838519 121839324 -60575918 + L1ME2 LINE L1 5375 6155 -9 220 278 0 19 chr6 121839633 121839687 -60575555 + MIR SINE MIR 19 71 -137 183 156 0 0 chr6 121840234 121840266 -60574976 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 277 322 33 44 chr6 121840329 121840419 -60574823 - L2 LINE L2 -1 3271 3183 285 323 38 7 chr6 121840525 121840646 -60574596 - MIR SINE MIR -81 127 4 291 357 172 9 chr6 121840920 121841363 -60573879 + L2 LINE L2 1753 2267 -1047 225 0 0 0 chr6 121842582 121842607 -60572635 + (A)n Simple_repeat Simple_repeat 1 25 0 653 243 6 30 chr6 121843101 121843270 -60571972 - HERVL74 LTR ERVL -3615 2070 1906 615 285 98 25 chr6 121843284 121843558 -60571684 - LTR52 LTR ERVL -127 294 1 302 113 0 19 chr6 121845187 121845240 -60570002 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 30 45 0 0 chr6 121845673 121845717 -60569525 + AT_rich Low_complexity Low_complexity 1 44 0 1587 176 0 18 chr6 121846979 121847257 -60567985 + AluJb SINE Alu 1 273 -39 26 64 0 0 chr6 121847760 121847807 -60567435 + AT_rich Low_complexity Low_complexity 1 47 0 1968 227 65 36 chr6 121847811 121847877 -60567365 - L1ME2 LINE L1 -27 6137 6074 820 255 9 19 chr6 121847877 121848089 -60567153 - MER63A DNA MER1_type 0 210 1 1968 227 65 36 chr6 121848089 121848609 -60566633 - L1ME2 LINE L1 -90 6074 5534 30 27 0 0 chr6 121850022 121850059 -60565183 + AT_rich Low_complexity Low_complexity 1 37 0 2209 101 3 0 chr6 121850069 121850367 -60564875 + AluSp SINE Alu 1 299 -14 458 293 46 8 chr6 121850748 121850987 -60564255 + L1M4 LINE L1 3293 3540 -2606 343 183 43 21 chr6 121851011 121851104 -60564138 + L1M4 LINE L1 3604 3698 -2448 5927 60 18 1 chr6 121851157 121851934 -60563308 + L1PA7 LINE L1 5365 6154 0 758 291 73 28 chr6 121852113 121852650 -60562592 + L1M4 LINE L1 3869 4429 -1717 189 107 0 0 chr6 121852665 121852693 -60562549 + (CA)n Simple_repeat Simple_repeat 2 29 0 933 273 121 52 chr6 121852703 121853109 -60562133 + L1MDa LINE L1 414 847 -5693 2976 188 110 21 chr6 121853117 121853915 -60561327 + L1MDa LINE L1 1305 2173 -4367 1721 119 22 114 chr6 121854036 121854405 -60560837 - MER1B DNA MER1_type 0 337 3 222 245 0 19 chr6 121855048 121855101 -60560141 + (CATA)n Simple_repeat Simple_repeat 1 52 0 643 298 18 6 chr6 121856075 121856488 -60558754 + LTR16C LTR ERVL 1 491 0 201 301 86 49 chr6 121856906 121857069 -60558173 - L2 LINE L2 -350 2964 2796 2116 113 20 0 chr6 121857109 121857401 -60557841 + AluSx SINE Alu 1 298 -14 25 31 0 0 chr6 121857698 121857730 -60557512 + AT_rich Low_complexity Low_complexity 1 32 0 323 270 8 48 chr6 121857797 121857923 -60557319 + L1MC5 LINE L1 7806 7926 -35 921 254 42 71 chr6 121858007 121858389 -60556853 + LTR16A1 LTR ERVL 81 451 -6 890 92 0 0 chr6 121859284 121859404 -60555838 + AluSg/x SINE Alu 149 268 -44 180 0 0 0 chr6 121859419 121859439 -60555803 + (GA)n Simple_repeat Simple_repeat 2 21 0 225 65 0 0 chr6 121860206 121860237 -60555005 + (TG)n Simple_repeat Simple_repeat 2 32 0 237 167 13 39 chr6 121860252 121860330 -60554912 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 0 0 0 chr6 121861341 121861363 -60553879 + AT_rich Low_complexity Low_complexity 1 22 0 2822 235 56 111 chr6 121861402 121862454 -60552788 + L1ME LINE L1 17 1010 -5530 636 181 9 0 chr6 121862546 121862651 -60552591 - L1MDa LINE L1 -6276 264 159 * 1858 228 68 45 chr6 121862650 121862872 -60552370 + L1ME LINE L1 2520 2736 -3804 2150 142 28 6 chr6 121862872 121863225 -60552017 - THE1B LTR MaLR 0 364 4 1858 228 68 45 chr6 121863225 121863758 -60551484 + L1ME LINE L1 2736 3292 -3248 21 0 0 0 chr6 121863789 121863810 -60551432 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 121863933 121863964 -60551278 + AT_rich Low_complexity Low_complexity 1 31 0 38 51 0 0 chr6 121864006 121864065 -60551177 + AT_rich Low_complexity Low_complexity 1 59 0 4039 245 66 20 chr6 121864202 121865572 -60549670 + L1ME LINE L1 3415 4847 -1693 1241 255 149 4 chr6 121865575 121866124 -60549118 + L1ME LINE L1 4968 5596 -944 27 75 0 12 chr6 121866372 121866431 -60548811 + AT_rich Low_complexity Low_complexity 1 60 -19 2058 67 0 0 chr6 121866431 121866684 -60548558 - AluY SINE Alu -24 287 35 27 75 0 12 chr6 121866684 121866704 -60548538 + AT_rich Low_complexity Low_complexity 60 79 0 241 98 0 0 chr6 121867069 121867193 -60548049 - AluSx SINE Alu 0 362 239 447 221 0 18 chr6 121867208 121867321 -60547921 - L1M4 LINE L1 -1198 4948 4838 1560 136 55 0 chr6 121867321 121867557 -60547685 - AluSx SINE Alu -63 249 1 287 284 37 28 chr6 121867611 121867720 -60547522 + L1ME LINE L1 5922 6031 -484 17539 33 4 2 chr6 121870308 121873201 -60542041 + L1PA5 LINE L1 3259 6154 0 554 261 171 6 chr6 121873448 121873624 -60541618 + MIR SINE MIR 57 261 -1 984 256 92 63 chr6 121873949 121874611 -60540631 - L1M4 LINE L1 -1881 4265 3578 1735 177 3 13 chr6 121874611 121874927 -60540315 - AluSq SINE Alu 0 313 1 984 256 92 63 chr6 121874927 121875006 -60540236 - L1M4 LINE L1 -2568 3578 3503 300 171 0 0 chr6 121875964 121876046 -60539196 + GA-rich Low_complexity Low_complexity 1 82 0 1371 143 0 0 chr6 121876087 121876303 -60538939 + L1PA6 LINE L1 5923 6138 -16 24 0 0 0 chr6 121876418 121876442 -60538800 + AT_rich Low_complexity Low_complexity 1 24 0 276 250 25 0 chr6 121876512 121876592 -60538650 + (TA)n Simple_repeat Simple_repeat 1 82 0 313 332 0 92 chr6 121876999 121877195 -60538047 + MER5A DNA MER1_type 1 178 -11 207 0 0 0 chr6 121877223 121877246 -60537996 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3720 122 11 0 chr6 121877248 121877791 -60537451 - L1PA11 LINE L1 -8 6166 5618 2676 171 2 0 chr6 121877891 121878364 -60536878 - L1PA11 LINE L1 -943 5203 4730 205 346 87 0 chr6 121878437 121878541 -60536701 + L2 LINE L2 3192 3304 -9 373 312 49 5 chr6 121878553 121878758 -60536484 + L1ME LINE L1 5562 5775 -346 342 0 0 0 chr6 121880703 121880741 -60534501 + (CAT)n Simple_repeat Simple_repeat 1 38 0 197 343 107 72 chr6 121881506 121881937 -60533305 - L2 LINE L2 -1 3271 2826 222 62 0 0 chr6 121882053 121882085 -60533157 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 285 267 0 56 chr6 121882404 121882494 -60532748 + MLT1E2 LTR MaLR 1 85 -541 1539 70 33 28 chr6 121882515 121882730 -60532512 + AluY SINE Alu 39 254 -57 3179 217 23 36 chr6 121882931 121883947 -60531295 + L1PA15 LINE L1 1532 2553 -4244 7047 208 18 0 chr6 121933947 121936321 -60478921 + L1PA15 LINE L1 4444 6816 0 697 214 43 0 chr6 121936347 121936534 -60478708 + L1M4 LINE L1 4969 5163 -983 23 0 0 0 chr6 121936625 121936648 -60478594 + AT_rich Low_complexity Low_complexity 1 23 0 240 351 18 9 chr6 121936764 121936878 -60478364 - MIR SINE MIR -70 138 24 698 294 25 0 chr6 121937115 121937312 -60477930 + MIR SINE MIR 57 258 -4 357 211 128 30 chr6 121938802 121938935 -60476307 + MIR SINE MIR 53 198 -64 37 69 0 0 chr6 121939028 121939100 -60476142 + AT_rich Low_complexity Low_complexity 1 72 0 427 364 61 40 chr6 121939254 121939732 -60475510 - L2 LINE L2 -1043 2271 1784 237 342 86 43 chr6 121940218 121940405 -60474837 + L3b LINE CR1 1303 1497 -86 351 0 0 0 chr6 121940757 121940796 -60474446 + (TG)n Simple_repeat Simple_repeat 2 40 0 29 47 0 0 chr6 121943595 121943638 -60471604 + AT_rich Low_complexity Low_complexity 1 43 0 316 182 30 0 chr6 121945034 121945100 -60470142 - AluYb8 SINE Alu -7 301 234 335 388 0 0 chr6 121945146 121945262 -60469980 - L2 LINE L2 -8 3264 3149 350 297 11 0 chr6 121946528 121946619 -60468623 - MER81 DNA DNA -1 113 22 832 361 32 14 chr6 121946706 121947207 -60468035 - L2 LINE L2 -340 2974 2465 29 0 0 0 chr6 121947874 121947903 -60467339 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr6 121948695 121948746 -60466496 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr6 121949060 121949097 -60466145 + AT_rich Low_complexity Low_complexity 1 37 0 254 170 21 0 chr6 121949748 121949795 -60465447 + L2 LINE L2 3266 3313 0 355 302 10 0 chr6 121949907 121950003 -60465239 + MIR SINE MIR 57 153 -109 1774 170 12 77 chr6 121950304 121950721 -60464521 + MLT1B LTR MaLR 1 390 0 28 29 0 0 chr6 121951013 121951048 -60464194 + AT_rich Low_complexity Low_complexity 1 35 0 37 39 0 0 chr6 121951189 121951240 -60464002 + AT_rich Low_complexity Low_complexity 1 51 0 1680 147 0 7 chr6 121951692 121951964 -60463278 - AluSq SINE Alu -1 312 43 477 50 0 0 chr6 121952173 121952233 -60463009 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 316 133 0 0 chr6 121953889 121953934 -60461308 + Alu SINE Alu 1 45 -263 1225 98 0 0 chr6 121953934 121954097 -60461145 + AluSg/x SINE Alu 137 299 -13 207 0 0 0 chr6 121954170 121954193 -60461049 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 23 68 0 0 chr6 121955293 121955337 -60459905 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 121955423 121955444 -60459798 + AT_rich Low_complexity Low_complexity 1 21 0 210 200 50 25 chr6 121955611 121955691 -60459551 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 463 347 73 7 chr6 121956795 121957095 -60458147 - L1ME LINE L1 -312 5809 5490 446 301 7 22 chr6 121957405 121957541 -60457701 + MIR SINE MIR 19 152 -110 810 316 28 8 chr6 121957702 121957952 -60457290 + MIR SINE MIR 7 261 -1 1745 84 4 21 chr6 121960592 121960830 -60454412 + AluSp SINE Alu 73 306 -7 233 267 17 0 chr6 121962982 121963042 -60452200 - MER33 DNA MER1_type -234 90 30 323 268 9 18 chr6 121965191 121965303 -60449939 + (CA)n Simple_repeat Simple_repeat 1 111 0 364 325 57 13 chr6 121965385 121965542 -60449700 + MIR SINE MIR 91 254 -8 13839 150 34 10 chr6 121965822 121966226 -60449016 - Tigger1 DNA MER2_type 0 2418 2025 2330 158 30 47 chr6 121966226 121966656 -60448586 + MSTB LTR MaLR 4 426 0 13839 150 34 10 chr6 121966656 121968560 -60446682 - Tigger1 DNA MER2_type -393 2025 50 6218 88 2 23 chr6 121968560 121969698 -60445544 + L1PA13 LINE L1 5022 6151 -12 13839 150 34 10 chr6 121969698 121969749 -60445493 - Tigger1 DNA MER2_type -2368 50 2 43 20 0 0 chr6 121969749 121969799 -60445443 + AT_rich Low_complexity Low_complexity 1 50 0 1509 203 122 3 chr6 121970515 121970813 -60444429 + MSTD LTR MaLR 1 349 -47 1909 131 0 7 chr6 121970813 121971087 -60444155 - AluSx SINE Alu -8 304 33 1509 203 122 3 chr6 121971087 121971142 -60444100 + MSTD LTR MaLR 349 396 0 6787 226 61 41 chr6 121971144 121971461 -60443781 + MSTD-int LTR MaLR 2 311 -1424 2126 133 0 7 chr6 121971461 121971770 -60443472 - AluSg1 SINE Alu -2 307 1 6787 226 61 41 chr6 121971770 121973025 -60442217 + MSTD-int LTR MaLR 311 1613 -122 2613 118 3 0 chr6 121973025 121973397 -60441845 - THE1C LTR MaLR 0 375 3 6787 226 61 41 chr6 121973397 121973523 -60441719 + MSTD-int LTR MaLR 1613 1735 0 1407 210 133 11 chr6 121973523 121973876 -60441366 + MSTD LTR MaLR 1 396 0 2112 194 56 2 chr6 121974278 121974721 -60440521 - MLT1C LTR MaLR 0 467 1 23 54 0 0 chr6 121974944 121974981 -60440261 + AT_rich Low_complexity Low_complexity 1 37 0 298 275 147 0 chr6 121974984 121975093 -60440149 + L2 LINE L2 3182 3306 -7 21 0 0 0 chr6 121975861 121975882 -60439360 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 121976257 121976291 -60438951 + AT_rich Low_complexity Low_complexity 1 34 0 364 248 54 69 chr6 121976997 121977173 -60438069 + MIR3 SINE MIR 6 180 -28 377 335 95 14 chr6 121978867 121979088 -60436154 + MIR SINE MIR 7 245 -17 23 54 0 0 chr6 121979388 121979425 -60435817 + AT_rich Low_complexity Low_complexity 1 37 0 856 159 49 2 chr6 121979793 121979969 -60435273 + L1MA4 LINE L1 5832 6016 -284 388 167 44 0 chr6 121979978 121980068 -60435174 + L1MB4 LINE L1 6086 6179 -1 1442 259 55 70 chr6 121981114 121981460 -60433782 + L1M4 LINE L1 2805 3155 -2991 1587 148 74 0 chr6 121981460 121981716 -60433526 + AluSx SINE Alu 1 275 -37 1442 259 55 70 chr6 121981716 121982538 -60432704 + L1M4 LINE L1 3155 3955 -2191 2255 104 0 0 chr6 121982549 121982838 -60432404 + AluSx SINE Alu 1 289 -23 451 219 156 92 chr6 121982853 121982984 -60432258 + HAL1 LINE L1 960 1081 -1426 306 0 0 0 chr6 121982984 121983018 -60432224 + (TA)n Simple_repeat Simple_repeat 1 34 0 451 219 156 92 chr6 121983018 121983265 -60431977 + HAL1 LINE L1 1081 1362 -1145 337 264 104 38 chr6 121983519 121983731 -60431511 + MER112 DNA MER1_type 29 254 -6 799 195 25 0 chr6 121984926 121985085 -60430157 - MER3 DNA MER1_type 0 209 47 2132 118 64 17 chr6 121985193 121985539 -60429703 - THE1B LTR MaLR -2 362 1 28 0 0 0 chr6 121985696 121985724 -60429518 + AT_rich Low_complexity Low_complexity 1 28 0 2045 121 10 3 chr6 121986002 121986291 -60428951 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr6 121986291 121986315 -60428927 + AT_rich Low_complexity Low_complexity 1 24 0 201 295 161 27 chr6 121986339 121986451 -60428791 - L2 LINE L2 -4 3268 3142 354 255 43 57 chr6 121986664 121986805 -60428437 - MIR SINE MIR -50 212 74 4891 187 68 74 chr6 121986880 121987465 -60427777 - Charlie1a DNA MER1_type -1338 1423 836 2445 158 47 0 chr6 121987465 121987870 -60427372 + MSTB LTR MaLR 1 424 -2 4891 187 68 74 chr6 121987870 121988714 -60426528 - Charlie1a DNA MER1_type -1925 836 2 21 0 0 0 chr6 121988860 121988881 -60426361 + AT_rich Low_complexity Low_complexity 1 21 0 1359 232 10 46 chr6 121988899 121989287 -60425955 + MLT1A2 LTR MaLR 1 374 0 298 202 43 5 chr6 121993189 121993275 -60421967 - MLT1I LTR MaLR 0 595 318 338 296 79 59 chr6 121993664 121993884 -60421358 - L1MEd LINE L1 -1127 1363 1070 2314 94 0 0 chr6 121993884 121994193 -60421049 - AluY SINE Alu -2 309 1 338 296 79 59 chr6 121994193 121994220 -60421022 - L1MEd LINE L1 -1420 1070 1045 5067 132 8 29 chr6 121994375 121995207 -60420035 - L1MA4A LINE L1 0 6303 5354 419 402 47 6 chr6 121995557 121995726 -60419516 - MER91A DNA MER1_type -3 193 18 263 296 25 49 chr6 121995818 121995980 -60419262 + L2 LINE L2 1889 2046 -1268 21 36 0 0 chr6 121997156 121997184 -60418058 + AT_rich Low_complexity Low_complexity 1 28 0 740 300 71 0 chr6 121998235 121998502 -60416740 + MER102b DNA MER1_type 39 324 -17 420 299 59 33 chr6 122001117 122001433 -60413809 - L2 LINE L2 -213 3059 2739 1944 174 27 35 chr6 122001441 122001898 -60413344 - MLT1B LTR MaLR -8 459 1 567 359 62 34 chr6 122002120 122002538 -60412704 - L2 LINE L2 -1782 1532 1103 834 92 0 53 chr6 122002816 122002947 -60412295 - AluSp/q SINE Alu 0 313 190 1885 108 4 30 chr6 122002947 122003216 -60412026 - AluSp SINE Alu -51 262 1 468 0 0 0 chr6 122003589 122003641 -60411601 + (CA)n Simple_repeat Simple_repeat 1 52 0 1232 244 65 36 chr6 122005498 122005926 -60409316 + MER39 LTR ERV1 265 585 0 187 208 62 0 chr6 122006684 122006732 -60408510 - L2 LINE L2 -467 2847 2797 304 278 44 0 chr6 122006997 122007087 -60408155 - MER113 DNA MER1_type? -423 98 5 201 39 0 0 chr6 122007439 122007465 -60407777 + (CA)n Simple_repeat Simple_repeat 1 26 0 1168 249 59 11 chr6 122008553 122008947 -60406295 + L1M4 LINE L1 2923 3352 -2794 192 77 0 0 chr6 122008947 122008973 -60406269 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1168 249 59 11 chr6 122008973 122009124 -60406118 + L1M4 LINE L1 3352 3494 -2652 657 294 31 10 chr6 122009147 122009440 -60405802 + L1M4 LINE L1 3239 3537 -2609 1879 191 22 113 chr6 122009447 122009950 -60405292 - MER88 LTR ERVL -7 457 1 312 204 10 25 chr6 122009957 122010053 -60405189 + L1M4 LINE L1 3540 3633 -2513 2031 229 49 21 chr6 122010119 122010687 -60404555 + L1M4 LINE L1 3627 4210 -1936 226 143 0 0 chr6 122010680 122010715 -60404527 - L1MC3 LINE L1 -1036 6749 6715 * 398 52 69 0 chr6 122010721 122010779 -60404463 - MER31B LTR ERV1 -397 69 8 1173 256 50 6 chr6 122010780 122011237 -60404005 + L1M4 LINE L1 4932 5413 -749 1026 193 20 0 chr6 122011239 122011436 -60403806 - MLT1D LTR MaLR 0 505 305 534 258 16 0 chr6 122011436 122011564 -60403678 + L1MC3 LINE L1 6592 6721 -1064 255 273 0 15 chr6 122011572 122011638 -60403604 + MLT1F1 LTR MaLR 47 111 -456 2949 172 55 2 chr6 122011638 122012215 -60403027 + L1MC3 LINE L1 7175 7782 -3 21 57 0 0 chr6 122012466 122012501 -60402741 + AT_rich Low_complexity Low_complexity 1 35 0 297 0 0 0 chr6 122013180 122013213 -60402029 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1896 152 7 0 chr6 122013221 122013518 -60401724 - AluSx SINE Alu -13 299 1 21 71 0 0 chr6 122014584 122014626 -60400616 + AT_rich Low_complexity Low_complexity 1 42 0 445 318 138 21 chr6 122015393 122015814 -60399428 + L2 LINE L2 1890 2359 -955 1801 275 55 6 chr6 122015822 122016291 -60398951 + MLT1G LTR MaLR 11 502 -88 396 304 170 13 chr6 122016328 122016640 -60398602 + L2 LINE L2 2457 2817 -497 602 176 0 61 chr6 122016661 122016792 -60398450 + Charlie5 DNA MER1_type 1 123 -2489 1855 170 21 3 chr6 122016796 122017178 -60398064 + Charlie5 DNA MER1_type 2236 2624 0 348 317 50 118 chr6 122017193 122017590 -60397652 + L2 LINE L2 2871 3240 -32 318 245 10 59 chr6 122017954 122018056 -60397186 + MIR SINE MIR 108 204 -58 497 280 213 24 chr6 122018136 122018343 -60396899 - MIR SINE MIR -15 247 2 269 405 6 0 chr6 122018851 122019019 -60396223 + (CA)n Simple_repeat Simple_repeat 2 170 0 25 0 0 0 chr6 122019129 122019154 -60396088 + AT_rich Low_complexity Low_complexity 1 25 0 1457 185 38 48 chr6 122019358 122019672 -60395570 + AluJb SINE Alu 1 311 -1 2200 120 0 3 chr6 122021472 122021781 -60393461 + AluSq SINE Alu 1 308 -5 496 200 15 15 chr6 122021781 122021911 -60393331 + GA-rich Low_complexity Low_complexity 1 130 0 191 163 0 23 chr6 122021901 122021944 -60393298 + G-rich Low_complexity Low_complexity 3 44 0 * 596 181 268 0 chr6 122022164 122022302 -60392940 + MER45A DNA AcHobo 1 175 -3 321 26 0 0 chr6 122022396 122022434 -60392808 + (TG)n Simple_repeat Simple_repeat 1 38 0 283 305 67 0 chr6 122022730 122022835 -60392407 + MIR SINE MIR 74 185 -77 308 145 0 16 chr6 122022909 122022971 -60392271 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 2511 41 0 3 chr6 122024891 122025186 -60390056 - AluY SINE Alu -17 294 1 24 0 0 0 chr6 122026242 122026266 -60388976 + AT_rich Low_complexity Low_complexity 1 24 0 183 237 13 132 chr6 122027121 122027197 -60388045 + L2 LINE L2 3242 3308 -5 21 0 0 0 chr6 122027484 122027505 -60387737 + AT_rich Low_complexity Low_complexity 1 21 0 257 183 17 0 chr6 122027894 122027954 -60387288 + (TA)n Simple_repeat Simple_repeat 2 62 0 546 269 14 28 chr6 122028755 122028896 -60386346 + L2 LINE L2 2524 2662 -652 496 244 87 143 chr6 122028943 122029039 -60386203 + L2 LINE L2 2923 3023 -290 2187 109 0 22 chr6 122029039 122029351 -60385891 - AluSx SINE Alu -7 305 1 496 244 87 143 chr6 122029351 122029441 -60385801 + L2 LINE L2 3023 3116 -197 216 0 0 0 chr6 122029441 122029465 -60385777 + (TTA)n Simple_repeat Simple_repeat 1 24 0 19223 54 5 0 chr6 122029466 122032684 -60382558 - L1PA5 LINE L1 -18 6136 2902 496 244 87 143 chr6 122032684 122032908 -60382334 + L2 LINE L2 3115 3313 0 530 297 98 28 chr6 122033353 122033710 -60381532 + L1ME3A LINE L1 4787 5168 -978 249 293 15 15 chr6 122033849 122033982 -60381260 + L1ME3A LINE L1 5315 5447 -2361 2187 213 27 21 chr6 122033988 122034505 -60380737 + L1MD3 LINE L1 7476 7995 0 326 279 177 66 chr6 122034501 122034941 -60380301 + L1ME3A LINE L1 5423 5911 -259 * 204 40 0 0 chr6 122035252 122035277 -60379965 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 32 57 0 0 chr6 122035429 122035482 -60379760 + AT_rich Low_complexity Low_complexity 1 53 0 1017 182 0 0 chr6 122035661 122035826 -60379416 - AluSg/x SINE Alu -11 301 137 201 333 158 0 chr6 122037472 122037586 -60377656 + L2 LINE L2 3181 3312 -1 22 0 0 0 chr6 122037587 122037609 -60377633 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr6 122037878 122037916 -60377326 + (CA)n Simple_repeat Simple_repeat 2 39 0 2041 70 32 85 chr6 122039854 122040170 -60375072 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr6 122043434 122043456 -60371786 + AT_rich Low_complexity Low_complexity 1 22 0 42683 36 21 1 chr6 122043560 122049588 -60365654 + L1PA2 LINE L1 2 6153 -2 401 361 47 6 chr6 122050577 122050746 -60364496 + L3 LINE CR1 1273 1448 -129 1763 149 29 7 chr6 122050875 122051176 -60364066 + AluJb SINE Alu 2 308 0 306 289 31 39 chr6 122051259 122051387 -60363855 - MIR SINE MIR -9 253 127 583 76 0 0 chr6 122051890 122051991 -60363251 - AluSg/x SINE Alu 0 306 206 268 250 0 0 chr6 122052923 122052983 -60362259 + Charlie8 DNA MER1_type 1368 1427 -990 2094 189 26 24 chr6 122053319 122053780 -60361462 - L1MA10 LINE L1 -13 6321 5860 2185 117 0 3 chr6 122054908 122055216 -60360026 + AluSc SINE Alu 1 307 -2 3341 118 20 8 chr6 122055486 122056275 -60358967 - L1P4 LINE L1 -586 5575 4781 524 332 124 35 chr6 122056277 122057018 -60358224 - L1M4 LINE L1 -3106 3040 2234 883 170 105 0 chr6 122057156 122057327 -60357915 - MER5A DNA MER1_type 0 189 1 875 241 164 8 chr6 122057651 122058029 -60357213 + Zaphod DNA AcHobo 3595 4031 0 405 0 0 0 chr6 122058894 122058939 -60356303 + (CA)n Simple_repeat Simple_repeat 2 46 0 3377 136 55 25 chr6 122059906 122060540 -60354702 - MER39B LTR ERV1 0 653 1 875 230 67 0 chr6 122061243 122061482 -60353760 + MIR SINE MIR 5 259 -3 207 0 0 0 chr6 122061996 122062019 -60353223 + (T)n Simple_repeat Simple_repeat 1 23 0 333 316 29 102 chr6 122063179 122063423 -60351819 - L2 LINE L2 -3 3269 3044 36 23 0 0 chr6 122065294 122065337 -60349905 + AT_rich Low_complexity Low_complexity 1 43 0 688 77 69 4 chr6 122065337 122065782 -60349460 + (TA)n Simple_repeat Simple_repeat 1 473 0 579 101 65 6 chr6 122065801 122065970 -60349272 + (TA)n Simple_repeat Simple_repeat 2 180 0 1408 200 3 21 chr6 122066077 122066362 -60348880 - AluJb SINE Alu -30 282 3 833 153 17 11 chr6 122066886 122067063 -60348179 + GA-rich Low_complexity Low_complexity 1 178 0 408 320 101 26 chr6 122067352 122067658 -60347584 + HAL1 LINE L1 826 1154 -1353 221 347 66 9 chr6 122067751 122067944 -60347298 - MIR SINE MIR -41 221 18 187 336 101 40 chr6 122068135 122068284 -60346958 + MER5A DNA MER1_type 16 173 -16 1333 275 61 7 chr6 122068284 122068727 -60346515 + L1MEc LINE L1 290 756 -5640 836 227 112 12 chr6 122068745 122069076 -60346166 + L1MEc LINE L1 849 1212 -5184 195 274 0 20 chr6 122069263 122069314 -60345928 - L2 LINE L2 -22 3291 3242 1015 225 114 25 chr6 122071104 122071419 -60343823 - MER2 DNA MER2_type 0 344 2 1719 238 204 33 chr6 122071609 122071884 -60343358 + Zaphod DNA AcHobo 10 237 -3794 1077 188 156 28 chr6 122071884 122072204 -60343038 - MLT1A1 LTR MaLR -4 361 1 1719 238 204 33 chr6 122072204 122072571 -60342671 + Zaphod DNA AcHobo 237 762 -3269 348 125 0 0 chr6 122072577 122072625 -60342617 - FRAM SINE Alu -43 123 76 2276 55 0 0 chr6 122072881 122073153 -60342089 - AluY SINE Alu -5 306 35 236 100 25 0 chr6 122073200 122073240 -60342002 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1301 162 41 70 chr6 122073329 122073600 -60341642 - AluJo SINE Alu -32 280 18 391 314 163 0 chr6 122074945 122075098 -60340144 + MER5A DNA MER1_type 10 187 -2 339 222 99 19 chr6 122075129 122075291 -60339951 - MER5C DNA MER1_type -49 275 101 186 43 0 0 chr6 122077394 122077417 -60337825 + (CA)n Simple_repeat Simple_repeat 2 24 0 468 0 0 0 chr6 122077478 122077530 -60337712 + (TA)n Simple_repeat Simple_repeat 1 52 0 763 113 0 0 chr6 122077727 122077833 -60337409 + AluJb SINE Alu 202 307 -5 572 230 14 14 chr6 122078144 122078283 -60336959 - LTR41 LTR ERVL -634 139 1 224 59 29 0 chr6 122078303 122078337 -60336905 + (TA)n Simple_repeat Simple_repeat 1 35 0 1115 186 0 5 chr6 122080905 122081093 -60334149 - MER20 DNA MER1_type -1 218 32 342 275 0 0 chr6 122081225 122081305 -60333937 + L2 LINE L2 3234 3313 0 428 325 16 68 chr6 122081361 122081552 -60333690 - MER5A DNA MER1_type -2 187 7 180 378 14 0 chr6 122081650 122081724 -60333518 + L2 LINE L2 2980 3054 -218 850 355 87 11 chr6 122081794 122082323 -60332919 + MLT1K LTR MaLR 17 585 -3 196 406 41 0 chr6 122082429 122082552 -60332690 + L2 LINE L2 3144 3271 -1 219 277 117 51 chr6 122083071 122083208 -60332034 - L2 LINE L2 -2 3311 3166 1484 172 130 60 chr6 122083502 122083744 -60331498 - MLT1D LTR MaLR -2 503 279 2434 116 25 0 chr6 122083744 122084099 -60331143 - THE1B LTR MaLR 0 364 1 1484 172 130 60 chr6 122084099 122084286 -60330956 - MLT1D LTR MaLR -226 279 44 2169 121 0 10 chr6 122084744 122085058 -60330184 - AluY SINE Alu 0 311 1 567 317 93 14 chr6 122085263 122085553 -60329689 - L2 LINE L2 0 3313 3001 299 330 56 26 chr6 122087509 122087812 -60327430 - L1M4c LINE L1 -4784 1600 1289 1606 128 72 1 chr6 122087950 122088295 -60326947 + L1PA14 LINE L1 5768 6172 -2 359 220 68 25 chr6 122089100 122089218 -60326024 - MLT1K LTR MaLR -47 541 419 243 218 0 0 chr6 122089266 122089321 -60325921 - MLT1K LTR MaLR -158 430 376 2117 139 0 3 chr6 122089578 122089881 -60325361 - AluSx SINE Alu -10 302 1 29 28 0 0 chr6 122090144 122090180 -60325062 + AT_rich Low_complexity Low_complexity 1 36 0 449 277 0 0 chr6 122090461 122090555 -60324687 - MER81 DNA DNA -1 113 20 59 27 0 0 chr6 122090783 122090856 -60324386 + AT_rich Low_complexity Low_complexity 1 73 0 255 208 83 56 chr6 122091305 122091377 -60323865 + MLT1J2 LTR MaLR 69 142 -308 295 256 114 114 chr6 122091432 122091608 -60323634 + MLT1J2 LTR MaLR 240 415 -35 190 81 54 0 chr6 122091705 122091742 -60323500 + (TA)n Simple_repeat Simple_repeat 1 39 0 259 200 0 29 chr6 122091809 122091879 -60323363 + MER31A-int LTR ERV1 4819 4886 -50 2371 165 43 14 chr6 122091883 122092320 -60322922 + MER31A LTR ERV1 1 450 -35 604 307 29 15 chr6 122092734 122092939 -60322303 + MIR SINE MIR 49 256 -6 236 143 24 0 chr6 122093013 122093055 -60322187 + MER63 DNA MER1_type 1 43 -393 935 215 146 0 chr6 122093059 122093333 -60321909 + MER63 DNA MER1_type 729 1042 -18 412 330 59 39 chr6 122093453 122093656 -60321586 + MIR SINE MIR 49 255 -7 200 309 49 81 chr6 122095127 122095250 -60319992 - L2 LINE L2 -8 3305 3187 986 200 40 7 chr6 122096361 122096636 -60318606 + MER33 DNA MER1_type 41 324 0 2280 65 3 3 chr6 122096719 122097011 -60318231 - AluY SINE Alu -19 292 1 752 197 60 49 chr6 122097097 122097280 -60317962 + MER20 DNA MER1_type 32 216 -3 5671 60 38 22 chr6 122097480 122098281 -60316961 - L1PA8 LINE L1 0 6172 5386 189 216 0 0 chr6 122098626 122098663 -60316579 + MIR SINE MIR 223 259 -3 198 0 0 0 chr6 122098965 122098987 -60316255 + (A)n Simple_repeat Simple_repeat 1 22 0 840 321 11 4 chr6 122098989 122099266 -60315976 + L2 LINE L2 2175 2453 -861 1296 85 15 45 chr6 122099386 122099585 -60315657 + MER30 DNA MER1_type 1 193 -37 483 273 107 0 chr6 122099585 122099735 -60315507 + L2 LINE L2 2645 2810 -504 864 183 91 6 chr6 122099744 122099919 -60315323 - MER58A DNA MER1_type -10 214 25 808 245 75 14 chr6 122099921 122100133 -60315109 + L2 LINE L2 3089 3313 0 351 0 0 0 chr6 122100408 122100447 -60314795 + (TA)n Simple_repeat Simple_repeat 2 40 0 180 0 0 0 chr6 122100447 122100467 -60314775 + (TTG)n Simple_repeat Simple_repeat 2 21 0 376 333 19 25 chr6 122100989 122101151 -60314091 - LTR16C LTR ERVL -295 196 36 254 308 67 29 chr6 122101502 122101606 -60313636 + L2 LINE L2 3182 3289 -24 293 284 40 14 chr6 122102271 122102345 -60312897 - MIR SINE MIR -155 107 32 198 0 0 0 chr6 122103595 122103617 -60311625 + (CA)n Simple_repeat Simple_repeat 2 23 0 215 61 30 0 chr6 122104350 122104383 -60310859 + (TA)n Simple_repeat Simple_repeat 2 35 0 25 51 0 0 chr6 122105597 122105636 -60309606 + AT_rich Low_complexity Low_complexity 1 39 0 287 281 0 24 chr6 122106067 122106149 -60309093 + MIR SINE MIR 61 140 -122 4173 119 17 11 chr6 122106633 122107279 -60307963 - MER39B LTR ERV1 -3 650 1 400 357 78 0 chr6 122109004 122109158 -60306084 - L2 LINE L2 -1 3271 3106 506 253 51 21 chr6 122109280 122109712 -60305530 + LTR33 LTR ERVL 3 521 0 228 195 0 0 chr6 122109937 122109978 -60305264 + MER34 LTR ERV1 6 46 -496 1500 189 127 19 chr6 122110034 122110405 -60304837 + MER39 LTR ERV1 288 698 -9 2057 220 40 49 chr6 122110448 122111075 -60304167 + MLT1E3 LTR MaLR 4 624 0 958 303 51 9 chr6 122111398 122111731 -60303511 + MLT1I LTR MaLR 63 409 0 2295 101 0 0 chr6 122111783 122112080 -60303162 + AluSg SINE Alu 1 297 -13 1213 218 58 14 chr6 122112084 122112378 -60302864 + L1MA9 LINE L1 5911 6217 -95 2275 86 0 0 chr6 122112380 122112685 -60302557 - AluSc SINE Alu 0 307 3 356 154 0 51 chr6 122112690 122112768 -60302474 + L1MA9 LINE L1 6207 6280 -32 23 54 0 0 chr6 122113071 122113108 -60302134 + AT_rich Low_complexity Low_complexity 1 37 0 381 351 0 8 chr6 122113524 122113658 -60301584 - MER94 DNA DNA -1 133 1 285 275 41 111 chr6 122113718 122113799 -60301443 + MIR SINE MIR 48 112 -150 2120 177 11 0 chr6 122113799 122114160 -60301082 - MLT1A1 LTR MaLR 0 365 1 285 275 41 111 chr6 122114160 122114249 -60300993 + MIR SINE MIR 112 206 -56 184 283 43 0 chr6 122115143 122115189 -60300053 - L2 LINE L2 -1432 1882 1835 33 80 0 0 chr6 122115398 122115473 -60299769 + AT_rich Low_complexity Low_complexity 1 75 0 201 74 0 0 chr6 122116322 122116349 -60298893 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 122116556 122116584 -60298658 + AT_rich Low_complexity Low_complexity 1 28 0 205 247 73 65 chr6 122117259 122117373 -60297869 + MIR SINE MIR 37 149 -67 23 0 0 0 chr6 122118654 122118677 -60296565 + AT_rich Low_complexity Low_complexity 1 23 0 334 257 38 0 chr6 122120150 122120255 -60294987 - MER103 DNA DNA -57 109 1 1764 77 151 4 chr6 122120571 122120830 -60294412 + AluY SINE Alu 2 298 -3 191 326 102 0 chr6 122122324 122122422 -60292820 - MIR SINE MIR -3 259 152 238 359 23 53 chr6 122122624 122122755 -60292487 - MIR SINE MIR -63 145 19 371 334 29 19 chr6 122123991 122124156 -60291086 + MIR3 SINE MIR 1 167 -64 2078 128 0 10 chr6 122124599 122124911 -60290331 + AluSg SINE Alu 1 309 -1 260 109 0 22 chr6 122124995 122125041 -60290201 + (TATG)n Simple_repeat Simple_repeat 2 46 0 254 217 14 0 chr6 122125031 122125100 -60290142 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 * 64 67 0 0 chr6 122125342 122125462 -60289780 + AT_rich Low_complexity Low_complexity 1 120 0 24 32 0 0 chr6 122126699 122126730 -60288512 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr6 122127039 122127063 -60288179 + AT_rich Low_complexity Low_complexity 1 24 0 2019 147 0 10 chr6 122127277 122127584 -60287658 + AluSx SINE Alu 5 308 -4 698 294 51 85 chr6 122128147 122128839 -60286403 - L2 LINE L2 0 3313 2638 1270 239 65 36 chr6 122129211 122129639 -60285603 + MER39 LTR ERV1 265 585 0 187 208 62 0 chr6 122130397 122130445 -60284797 - L2 LINE L2 -467 2847 2797 304 278 44 0 chr6 122130710 122130800 -60284442 - MER113 DNA MER1_type? -423 98 5 201 39 0 0 chr6 122131152 122131178 -60284064 + (CA)n Simple_repeat Simple_repeat 1 26 0 1172 249 58 11 chr6 122132265 122132660 -60282582 + L1M4 LINE L1 2922 3352 -2794 192 77 0 0 chr6 122132660 122132686 -60282556 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1172 249 58 11 chr6 122132686 122132837 -60282405 + L1M4 LINE L1 3352 3494 -2652 657 294 31 10 chr6 122132860 122133153 -60282089 + L1M4 LINE L1 3239 3537 -2609 1928 189 20 113 chr6 122133160 122133664 -60281578 - MER88 LTR ERVL -7 457 1 312 204 10 25 chr6 122133671 122133767 -60281475 + L1M4 LINE L1 3540 3633 -2513 2031 229 49 21 chr6 122133833 122134401 -60280841 + L1M4 LINE L1 3627 4210 -1936 226 143 0 0 chr6 122134394 122134429 -60280813 - L1MC3 LINE L1 -1036 6749 6715 * 398 52 69 0 chr6 122134435 122134493 -60280749 - MER31B LTR ERV1 -397 69 8 1173 256 50 6 chr6 122134494 122134951 -60280291 + L1M4 LINE L1 4932 5413 -749 1012 198 20 0 chr6 122134953 122135150 -60280092 - MLT1D LTR MaLR 0 505 305 534 258 16 0 chr6 122135150 122135278 -60279964 + L1MC3 LINE L1 6592 6721 -1064 255 273 0 15 chr6 122135286 122135352 -60279890 + MLT1F1 LTR MaLR 47 111 -456 2912 175 55 2 chr6 122135352 122135929 -60279313 + L1MC3 LINE L1 7175 7782 -3 21 57 0 0 chr6 122136180 122136215 -60279027 + AT_rich Low_complexity Low_complexity 1 35 0 261 0 0 0 chr6 122136894 122136923 -60278319 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1853 153 7 3 chr6 122136931 122137231 -60278011 - AluSx SINE Alu -11 301 1 21 71 0 0 chr6 122138297 122138339 -60276903 + AT_rich Low_complexity Low_complexity 1 42 0 445 318 138 21 chr6 122139106 122139527 -60275715 + L2 LINE L2 1890 2359 -955 1815 273 55 6 chr6 122139535 122140004 -60275238 + MLT1G LTR MaLR 11 502 -88 396 304 170 13 chr6 122140041 122140353 -60274889 + L2 LINE L2 2457 2817 -497 602 176 0 61 chr6 122140374 122140505 -60274737 + Charlie5 DNA MER1_type 1 123 -2489 1855 170 21 3 chr6 122140509 122140891 -60274351 + Charlie5 DNA MER1_type 2236 2624 0 348 317 50 118 chr6 122140906 122141303 -60273939 + L2 LINE L2 2871 3240 -32 318 245 10 59 chr6 122141667 122141769 -60273473 + MIR SINE MIR 108 204 -58 497 280 213 24 chr6 122141849 122142056 -60273186 - MIR SINE MIR -15 247 2 269 405 6 0 chr6 122142564 122142732 -60272510 + (CA)n Simple_repeat Simple_repeat 2 170 0 25 0 0 0 chr6 122142842 122142867 -60272375 + AT_rich Low_complexity Low_complexity 1 25 0 189 107 0 0 chr6 122142985 122143013 -60272229 + (CA)n Simple_repeat Simple_repeat 2 29 0 1457 185 38 48 chr6 122143073 122143387 -60271855 + AluJb SINE Alu 1 311 -1 2200 120 0 3 chr6 122145187 122145496 -60269746 + AluSq SINE Alu 1 308 -5 502 193 31 25 chr6 122145496 122145657 -60269585 + GA-rich Low_complexity Low_complexity 1 162 0 596 181 268 0 chr6 122145881 122146019 -60269223 + MER45A DNA AcHobo 1 175 -3 339 25 0 0 chr6 122146113 122146153 -60269089 + (TG)n Simple_repeat Simple_repeat 1 40 0 283 305 67 0 chr6 122146449 122146554 -60268688 + MIR SINE MIR 74 185 -77 308 145 0 16 chr6 122146628 122146690 -60268552 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 21 0 0 0 chr6 122148536 122148557 -60266685 + AT_rich Low_complexity Low_complexity 1 21 0 2511 41 0 3 chr6 122148610 122148905 -60266337 - AluY SINE Alu -17 294 1 24 0 0 0 chr6 122149962 122149986 -60265256 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 122151238 122151259 -60263983 + AT_rich Low_complexity Low_complexity 1 21 0 257 183 17 0 chr6 122151648 122151708 -60263534 + (TA)n Simple_repeat Simple_repeat 1 61 0 538 280 14 28 chr6 122152509 122152652 -60262590 + L2 LINE L2 2524 2664 -650 264 59 0 0 chr6 122152652 122152686 -60262556 + (T)n Simple_repeat Simple_repeat 1 34 0 514 241 87 143 chr6 122152705 122152801 -60262441 + L2 LINE L2 2923 3023 -290 2187 109 0 22 chr6 122152801 122153113 -60262129 - AluSx SINE Alu -7 305 1 514 241 87 143 chr6 122153113 122153203 -60262039 + L2 LINE L2 3023 3116 -197 243 0 0 0 chr6 122153203 122153230 -60262012 + (TTA)n Simple_repeat Simple_repeat 1 27 0 19223 54 5 0 chr6 122153231 122156450 -60258792 - L1PA5 LINE L1 -18 6136 2902 514 241 87 143 chr6 122156450 122156674 -60258568 + L2 LINE L2 3115 3313 0 530 297 98 28 chr6 122157119 122157476 -60257766 + L1ME3A LINE L1 4787 5168 -978 249 293 15 15 chr6 122157615 122157748 -60257494 + L1ME3A LINE L1 5315 5447 -2361 2187 213 27 21 chr6 122157754 122158271 -60256971 + L1MD3 LINE L1 7476 7995 0 326 279 177 66 chr6 122158267 122158707 -60256535 + L1ME3A LINE L1 5423 5911 -259 * 204 40 0 0 chr6 122159018 122159043 -60256199 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 32 57 0 0 chr6 122159195 122159248 -60255994 + AT_rich Low_complexity Low_complexity 1 53 0 1017 182 0 0 chr6 122159427 122159592 -60255650 - AluSg/x SINE Alu -11 301 137 201 333 158 0 chr6 122161246 122161360 -60253882 + L2 LINE L2 3181 3312 -1 22 0 0 0 chr6 122161361 122161383 -60253859 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr6 122161652 122161690 -60253552 + (CA)n Simple_repeat Simple_repeat 2 39 0 2041 70 32 85 chr6 122163628 122163944 -60251298 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr6 122167208 122167230 -60248012 + AT_rich Low_complexity Low_complexity 1 22 0 41012 34 21 1 chr6 122167334 122173362 -60241880 + L1PA2 LINE L1 2 6153 -2 396 361 47 6 chr6 122174351 122174520 -60240722 + L3 LINE CR1 1273 1448 -129 1819 142 29 7 chr6 122174649 122174950 -60240292 + AluJb SINE Alu 2 308 0 302 289 31 39 chr6 122175033 122175161 -60240081 - MIR SINE MIR -9 253 127 595 76 0 0 chr6 122175664 122175789 -60239453 - AluSg/x SINE Alu 0 327 203 249 250 0 0 chr6 122176721 122176781 -60238461 + Charlie8 DNA MER1_type 2357 2416 -1 2945 185 33 17 chr6 122177117 122177756 -60237486 - L1MA10 LINE L1 -13 6321 5673 938 182 30 0 chr6 122177776 122177974 -60237268 + L1M2 LINE L1 5372 5575 -725 23 0 0 0 chr6 122178007 122178030 -60237212 + AT_rich Low_complexity Low_complexity 1 23 0 219 283 0 0 chr6 122178418 122178471 -60236771 + MIR SINE MIR 210 262 0 332 270 43 35 chr6 122178477 122178592 -60236650 - MIR SINE MIR -34 228 113 1835 154 0 27 chr6 122178934 122179249 -60235993 + AluJb SINE Alu 1 307 0 209 340 38 19 chr6 122179580 122179686 -60235556 + L2 LINE L2 2909 3016 -256 638 282 56 20 chr6 122179757 122180009 -60235233 + MIR SINE MIR 2 262 0 421 262 121 7 chr6 122180685 122180826 -60234416 + MER5A DNA MER1_type 33 189 0 1999 133 0 3 chr6 122181327 122181613 -60233629 - AluJb SINE Alu -19 293 9 457 258 84 18 chr6 122184138 122184305 -60230937 - MIR SINE MIR -50 212 35 26 0 0 0 chr6 122185356 122185382 -60229860 + AT_rich Low_complexity Low_complexity 1 26 0 222 269 15 0 chr6 122185645 122185712 -60229530 + GA-rich Low_complexity Low_complexity 1 68 0 182 316 61 44 chr6 122185792 122185906 -60229336 - L2 LINE L2 -878 2436 2321 490 276 47 29 chr6 122186297 122186467 -60228775 - MER5B DNA MER1_type -5 173 1 2115 255 10 19 chr6 122188081 122188595 -60226647 - MLT1F LTR MaLR -6 536 28 17134 185 33 11 chr6 122188945 122195583 -60219659 + L1PA13 LINE L1 2 6796 -18 778 251 0 26 chr6 122195620 122195811 -60219431 + AluJb SINE Alu 127 312 0 556 272 89 18 chr6 122196101 122196439 -60218803 + L1ME3A LINE L1 4039 4400 -1746 973 281 166 10 chr6 122196449 122197033 -60218209 + L1ME3A LINE L1 4573 5247 -899 2064 246 71 24 chr6 122197107 122197661 -60217581 + L1ME3A LINE L1 5274 5883 -287 780 230 99 5 chr6 122197661 122197852 -60217390 - MER63A DNA MER1_type -1 209 1 2064 246 71 24 chr6 122197852 122198146 -60217096 + L1ME3A LINE L1 5883 6162 -8 850 191 12 0 chr6 122198201 122198363 -60216879 - MER58B DNA MER1_type -5 336 173 246 289 45 58 chr6 122198432 122198588 -60216654 - MIR3 SINE MIR -25 183 30 2167 141 30 25 chr6 122200455 122200817 -60214425 + THE1B LTR MaLR 1 364 0 285 297 0 0 chr6 122201614 122201678 -60213564 + L2 LINE L2 3117 3180 -92 557 229 234 10 chr6 122201724 122201916 -60213326 + MER106A DNA MER1_type 2 236 0 22 35 0 0 chr6 122202538 122202567 -60212675 + AT_rich Low_complexity Low_complexity 1 29 0 207 350 114 24 chr6 122202782 122202905 -60212337 - MIR3 SINE MIR -62 146 13 22 0 0 0 chr6 122203115 122203137 -60212105 + AT_rich Low_complexity Low_complexity 1 22 0 3112 129 15 27 chr6 122203172 122203313 -60211929 + L1PA16 LINE L1 5625 5766 -400 216 0 0 0 chr6 122203313 122203337 -60211905 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 3112 129 15 27 chr6 122203337 122203744 -60211498 + L1PA16 LINE L1 5766 6166 0 1004 178 25 0 chr6 122203843 122204040 -60211202 - MER3 DNA MER1_type -5 204 3 3384 117 8 10 chr6 122204255 122204767 -60210475 - MER9 LTR ERVK 0 511 1 8089 91 2 25 chr6 122204767 122205949 -60209293 - HERVK9 LTR ERVK 0 5916 4762 4770 56 2 20 chr6 122205949 122206316 -60208926 - HERVK9 LTR ERVK -1574 4342 3991 2069 107 7 27 chr6 122206316 122206616 -60208626 + AluY SINE Alu 1 294 -17 4770 56 2 20 chr6 122206616 122206892 -60208350 - HERVK9 LTR ERVK -1925 3991 3711 10106 81 0 0 chr6 122206892 122208255 -60206987 - HERVK9 LTR ERVK -3130 2786 1424 3708 99 10 26 chr6 122208253 122208830 -60206412 - HERVK9 LTR ERVK -5348 568 1 * 3189 125 2 6 chr6 122208830 122209327 -60205915 - MER9 LTR ERVK 0 511 17 7962 156 18 8 chr6 122209484 122210937 -60204305 + Tigger1 DNA MER2_type 1 1468 -950 1403 108 52 0 chr6 122210937 122211150 -60204092 - MER30 DNA MER1_type 0 230 7 3795 118 3 0 chr6 122211156 122211734 -60203508 + Tigger1 DNA MER2_type 1461 2040 -378 288 243 0 0 chr6 122212620 122212694 -60202548 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 261 338 110 15 chr6 122212850 122212986 -60202256 - MIR SINE MIR -109 153 5 359 145 0 0 chr6 122213310 122213372 -60201870 + MSTB1 LTR MaLR 344 405 -27 1124 71 7 0 chr6 122214024 122214179 -60201063 + (TTC)n Simple_repeat Simple_repeat 1 156 0 23 0 0 0 chr6 122214290 122214313 -60200929 + AT_rich Low_complexity Low_complexity 1 23 0 2130 199 29 17 chr6 122214325 122214746 -60200496 - MSTB LTR MaLR 0 426 1 30 0 0 0 chr6 122215403 122215433 -60199809 + AT_rich Low_complexity Low_complexity 1 30 0 1349 233 75 55 chr6 122215548 122216004 -60199238 + MLT1C LTR MaLR 1 465 -2 295 154 31 0 chr6 122216518 122216583 -60198659 + GA-rich Low_complexity Low_complexity 3 69 0 460 318 131 5 chr6 122216798 122217088 -60198154 + MLT1J LTR MaLR 1 369 -142 373 350 87 15 chr6 122217208 122217414 -60197828 - MIR SINE MIR -41 221 1 641 313 96 24 chr6 122218272 122218690 -60196552 - MLT1H LTR MaLR 0 549 102 1496 310 57 40 chr6 122218765 122219471 -60195771 + L3 LINE CR1 761 1478 -99 207 182 109 18 chr6 122219492 122219547 -60195695 - MER5B DNA MER1_type 0 178 119 904 230 76 9 chr6 122219662 122219925 -60195317 + MER58B DNA MER1_type 37 341 0 187 255 255 21 chr6 122219950 122220044 -60195198 + MER5A DNA MER1_type 73 188 -1 28 0 0 0 chr6 122220065 122220093 -60195149 + AT_rich Low_complexity Low_complexity 1 28 0 2307 161 149 138 chr6 122220335 122220695 -60194547 + L1MC3 LINE L1 6711 7066 -719 273 263 53 21 chr6 122220695 122220790 -60194452 + MLT1F1 LTR MaLR 35 132 -435 2307 161 149 138 chr6 122220790 122221105 -60194137 + L1MC3 LINE L1 7066 7492 -293 1935 146 23 41 chr6 122221105 122221448 -60193794 - MER1B DNA MER1_type 0 337 1 2307 161 149 138 chr6 122221448 122221501 -60193741 + L1MC3 LINE L1 7492 7543 -242 2815 287 43 18 chr6 122222592 122223997 -60191245 - L1MEc LINE L1 -1483 4732 3282 5551 83 12 0 chr6 122223998 122224743 -60190499 + L1PA8A LINE L1 5358 6111 -20 3711 266 69 45 chr6 122224770 122227631 -60187611 - L1MEc LINE L1 -2922 3293 376 2037 114 125 36 chr6 122227631 122228024 -60187218 - MSTA LTR MaLR 0 428 1 3711 266 69 45 chr6 122228024 122228328 -60186914 - L1MEc LINE L1 -5839 376 81 1641 239 22 2 chr6 122228405 122228810 -60186432 + L1MB8 LINE L1 5760 6172 -6 1851 153 73 14 chr6 122230603 122230957 -60184285 + THE1C LTR MaLR 1 375 0 477 129 26 0 chr6 122232212 122232328 -60182914 + (TA)n Simple_repeat Simple_repeat 1 119 0 183 129 0 0 chr6 122233197 122233228 -60182014 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr6 122234207 122234238 -60181004 + AT_rich Low_complexity Low_complexity 1 31 0 185 385 24 0 chr6 122234792 122234875 -60180367 - L2 LINE L2 0 3272 3188 9994 174 8 6 chr6 122234930 122237671 -60177571 + L1PA13 LINE L1 3426 6163 0 466 290 102 11 chr6 122237857 122238043 -60177199 + L2 LINE L2 3111 3313 0 409 288 43 38 chr6 122238625 122238809 -60176433 + MIR SINE MIR 49 233 -29 2144 127 3 3 chr6 122239140 122239448 -60175794 - AluSx SINE Alu -4 308 1 646 270 128 18 chr6 122239545 122239771 -60175471 + MIR SINE MIR 11 261 -1 288 53 0 0 chr6 122239913 122239951 -60175291 + (CA)n Simple_repeat Simple_repeat 1 38 0 281 289 167 0 chr6 122240777 122240933 -60174309 - L1ME3A LINE L1 -222 5948 5767 889 255 77 17 chr6 122240937 122241180 -60174062 + MER77 LTR ERV1 1 359 -246 1383 177 0 8 chr6 122241180 122241417 -60173825 - MER46A DNA MER2_type -1 235 1 889 255 77 17 chr6 122241417 122241507 -60173735 + MER77 LTR ERV1 359 442 -163 2347 145 5 0 chr6 122242760 122243132 -60172110 + L1PA15 LINE L1 5779 6152 -13 216 0 0 0 chr6 122243153 122243177 -60172065 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3969 180 73 46 chr6 122243334 122244273 -60170969 + L1MC2 LINE L1 5379 6343 -1 209 33 33 0 chr6 122244371 122244401 -60170841 + (CA)n Simple_repeat Simple_repeat 2 32 0 198 191 16 111 chr6 122244436 122244499 -60170743 + L2 LINE L2 3202 3258 -55 24 67 0 0 chr6 122244512 122244557 -60170685 + AT_rich Low_complexity Low_complexity 1 45 0 749 266 25 93 chr6 122245594 122245872 -60169370 - MIR SINE MIR 0 262 4 2066 219 16 26 chr6 122245894 122246346 -60168896 - MER74B LTR ERVL 0 622 176 569 186 9 9 chr6 122246397 122246510 -60168732 - MER74A LTR ERVL -445 113 1 256 311 86 27 chr6 122246523 122246745 -60168497 + L1MC/D LINE L1 5614 5848 -1960 862 173 21 37 chr6 122247102 122247293 -60167949 - MER5A DNA MER1_type 0 189 2 234 0 0 0 chr6 122248403 122248429 -60166813 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 746 12 0 0 chr6 122248429 122248514 -60166728 - L1PA4 LINE L1 -16 6139 6055 207 69 0 0 chr6 122249136 122249165 -60166077 + (TG)n Simple_repeat Simple_repeat 2 30 0 217 184 0 61 chr6 122249912 122249961 -60165281 - L2 LINE L2 -5 3308 3263 392 320 93 34 chr6 122249967 122250236 -60165006 + MLT1J LTR MaLR 1 285 -226 197 211 18 0 chr6 122250259 122250316 -60164926 + GA-rich Low_complexity Low_complexity 2 59 0 1516 237 91 24 chr6 122250353 122250810 -60164432 - MLT2B1 LTR ERVL -20 534 1 308 302 63 32 chr6 122250816 122250942 -60164300 + MLT1J LTR MaLR 382 511 0 207 365 81 0 chr6 122251172 122251246 -60163996 + L2 LINE L2 2970 3049 -223 323 368 36 12 chr6 122251687 122251853 -60163389 - L1ME3A LINE L1 -273 5897 5728 204 204 37 0 chr6 122251929 122251983 -60163259 + (TA)n Simple_repeat Simple_repeat 2 57 0 599 320 64 27 chr6 122251984 122252401 -60162841 - L1ME3A LINE L1 -520 5642 5268 313 321 46 37 chr6 122252435 122252784 -60162458 - L1ME3A LINE L1 -912 5234 4883 2143 99 3 0 chr6 122253125 122253579 -60161663 - AluSc SINE Alu 0 455 1 2155 117 0 3 chr6 122304371 122304679 -60110563 + AluSc SINE Alu 1 307 -2 235 255 0 0 chr6 122305008 122305059 -60110183 - MIR3 SINE MIR -2 206 156 23 0 0 0 chr6 122305576 122305599 -60109643 + AT_rich Low_complexity Low_complexity 1 23 0 357 320 16 90 chr6 122306755 122306999 -60108243 - L2 LINE L2 -3 3269 3044 688 70 74 7 chr6 122308870 122309172 -60106070 + (TA)n Simple_repeat Simple_repeat 1 322 0 579 72 85 7 chr6 122309191 122309591 -60105651 + (TA)n Simple_repeat Simple_repeat 1 431 0 195 274 0 20 chr6 122309812 122309863 -60105379 - L2 LINE L2 -22 3291 3242 993 232 114 25 chr6 122311653 122311968 -60103274 - MER2 DNA MER2_type 0 344 2 1731 238 206 33 chr6 122312158 122312433 -60102809 + Zaphod DNA AcHobo 10 236 -3795 1061 188 156 28 chr6 122312433 122312753 -60102489 - MLT1A1 LTR MaLR -4 361 1 1731 238 206 33 chr6 122312753 122313119 -60102123 + Zaphod DNA AcHobo 236 762 -3269 1228 154 23 85 chr6 122313125 122313278 -60101964 - AluJo SINE Alu -53 259 127 1023 39 0 0 chr6 122313278 122313407 -60101835 - L1PA4 LINE L1 -1 6154 6026 1228 154 23 85 chr6 122313407 122313512 -60101730 - AluJo SINE Alu -185 127 17 249 193 25 93 chr6 122313516 122313677 -60101565 + Zaphod DNA AcHobo 772 921 -3110 809 239 68 10 chr6 122313701 122314071 -60101171 + Zaphod DNA AcHobo 3595 4022 -9 297 0 0 0 chr6 122314945 122314978 -60100264 + (CA)n Simple_repeat Simple_repeat 2 34 0 2279 51 0 0 chr6 122315438 122315712 -60099530 - AluY SINE Alu -3 308 35 236 100 25 0 chr6 122315759 122315799 -60099443 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1345 155 37 66 chr6 122315888 122316159 -60099083 - AluJo SINE Alu -32 280 18 384 314 163 0 chr6 122317505 122317658 -60097584 + MER5A DNA MER1_type 10 187 -2 325 228 99 19 chr6 122317689 122317851 -60097391 - MER5C DNA MER1_type -49 275 101 187 325 77 17 chr6 122320418 122320535 -60094707 + L2 LINE L2 3141 3264 -8 1979 133 7 7 chr6 122321101 122321394 -60093848 + AluJb SINE Alu 7 299 -13 22 56 0 0 chr6 122322693 122322729 -60092513 + AT_rich Low_complexity Low_complexity 1 36 0 710 257 86 40 chr6 122324031 122324253 -60090989 - MIR SINE MIR -2 260 29 297 335 122 26 chr6 122324271 122324501 -60090741 + ERVL LTR ERVL 4564 4815 -949 672 239 18 0 chr6 122324579 122324742 -60090500 - MER3 DNA MER1_type -1 208 43 422 284 43 52 chr6 122324827 122325038 -60090204 + LTR67 LTR ERVL 347 555 -2 345 372 84 5 chr6 122325796 122325987 -60089255 + L3 LINE CR1 1369 1574 -3 269 118 20 0 chr6 122326823 122326874 -60088368 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 200 176 0 0 chr6 122327059 122327093 -60088149 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 323 352 9 0 chr6 122327134 122327239 -60088003 - L3 LINE CR1 -456 1121 1016 186 103 0 0 chr6 122328620 122328649 -60086593 + (A)n Simple_repeat Simple_repeat 1 29 0 2442 56 20 0 chr6 122328761 122329065 -60086177 + AluY SINE Alu 1 310 -1 5756 29 30 0 chr6 122329628 122330326 -60084916 + L1PA4 LINE L1 5436 6154 -1 443 356 106 16 chr6 122330393 122330845 -60084397 - L3 LINE CR1 -630 947 455 435 356 57 0 chr6 122331012 122331206 -60084036 - L3 LINE CR1 -1114 463 259 21 0 0 0 chr6 122331395 122331416 -60083826 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 122332234 122332255 -60082987 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr6 122332262 122332308 -60082934 + (CA)n Simple_repeat Simple_repeat 2 47 0 180 0 0 0 chr6 122333592 122333612 -60081630 + (CAA)n Simple_repeat Simple_repeat 2 21 0 944 191 21 5 chr6 122333898 122334086 -60081156 - MER20 DNA MER1_type -1 218 28 558 281 66 12 chr6 122334359 122334526 -60080716 + MIR SINE MIR 25 200 -62 577 299 48 11 chr6 122335894 122336081 -60079161 + MER58A DNA MER1_type 31 224 0 200 213 0 0 chr6 122336195 122336242 -60079000 + (TA)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chr6 122336845 122336865 -60078377 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 181 316 0 0 chr6 122337688 122337745 -60077497 + MIR SINE MIR 90 146 -116 195 309 73 0 chr6 122337771 122337839 -60077403 + MIR SINE MIR 142 214 -48 411 262 10 0 chr6 122338044 122338147 -60077095 - MER103 DNA DNA -52 114 11 1283 186 95 44 chr6 122338221 122338566 -60076676 + AluJo SINE Alu 1 360 0 22 56 0 0 chr6 122338818 122338854 -60076388 + AT_rich Low_complexity Low_complexity 1 36 0 196 303 49 33 chr6 122339343 122339465 -60075777 + L2 LINE L2 3180 3303 -10 214 146 18 36 chr6 122339835 122339890 -60075352 + GA-rich Low_complexity Low_complexity 3 56 0 22 80 0 0 chr6 122340088 122340138 -60075104 + AT_rich Low_complexity Low_complexity 1 50 0 2169 114 13 0 chr6 122340931 122341237 -60074005 - AluSq SINE Alu -3 310 1 2071 132 30 0 chr6 122343018 122343321 -60071921 + AluSx SINE Alu 1 312 0 205 359 134 0 chr6 122343351 122343493 -60071749 - L2 LINE L2 -411 2903 2743 195 333 8 92 chr6 122343707 122343956 -60071286 - L2 LINE L2 -869 2445 2218 2171 131 0 0 chr6 122344149 122344461 -60070781 - AluSx SINE Alu 0 312 1 205 184 0 0 chr6 122344617 122344655 -60070587 + A-rich Low_complexity Low_complexity 2 39 0 223 170 0 0 chr6 122344973 122345020 -60070222 + A-rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr6 122345198 122345227 -60070015 + AT_rich Low_complexity Low_complexity 1 29 0 386 314 64 7 chr6 122345312 122345452 -60069790 - MIR SINE MIR -93 169 22 207 0 0 0 chr6 122345517 122345540 -60069702 + (A)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr6 122345968 122345989 -60069253 + (T)n Simple_repeat Simple_repeat 1 21 0 192 245 38 0 chr6 122345989 122346042 -60069200 + L2 LINE L2 2685 2739 -575 319 347 114 22 chr6 122346189 122346460 -60068782 - L2 LINE L2 -4 3309 3014 1947 133 7 0 chr6 122346468 122346782 -60068460 + AluSx SINE Alu 1 316 0 342 331 137 24 chr6 122346787 122347035 -60068207 - L2 LINE L2 -342 2972 2697 23 0 0 0 chr6 122347489 122347512 -60067730 + AT_rich Low_complexity Low_complexity 1 23 0 464 259 269 5 chr6 122347685 122347886 -60067356 - MIR SINE MIR -1 261 8 207 186 0 0 chr6 122348488 122348531 -60066711 + (TA)n Simple_repeat Simple_repeat 1 43 0 538 304 82 0 chr6 122350472 122350656 -60064586 + MIR SINE MIR 32 230 -32 1822 164 0 17 chr6 122350677 122350969 -60064273 + AluSx SINE Alu 22 308 -4 268 151 0 41 chr6 122350971 122351044 -60064198 + GA-rich Low_complexity Low_complexity 3 72 0 549 88 0 12 chr6 122351111 122351191 -60064051 + MADE1 DNA Mariner 2 80 0 231 61 0 0 chr6 122351240 122351273 -60063969 + (CAT)n Simple_repeat Simple_repeat 3 35 0 328 130 29 0 chr6 122351803 122351872 -60063370 + CT-rich Low_complexity Low_complexity 1 71 0 207 351 23 30 chr6 122352934 122353065 -60062177 + L2 LINE L2 2553 2682 -632 320 296 20 0 chr6 122353101 122353199 -60062043 - MIR SINE MIR -162 100 1 754 230 51 123 chr6 122353338 122353769 -60061473 - MLT1L LTR MaLR -8 607 208 257 272 7 66 chr6 122353951 122354087 -60061155 + MER112 DNA MER1_type 125 252 -8 192 40 0 0 chr6 122354088 122354113 -60061129 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4348 57 7 5 chr6 122354120 122354685 -60060557 + L1PA8 LINE L1 5607 6172 0 276 342 60 8 chr6 122355457 122355574 -60059668 - L2 LINE L2 -24 3248 3126 326 336 76 0 chr6 122355620 122355751 -60059491 - MIR SINE MIR -5 257 117 252 0 0 0 chr6 122355832 122355860 -60059382 + (TG)n Simple_repeat Simple_repeat 2 29 0 195 204 0 0 chr6 122356358 122356407 -60058835 + GA-rich Low_complexity Low_complexity 2 50 0 2362 103 0 0 chr6 122357151 122357463 -60057779 + AluSx SINE Alu 1 312 0 313 28 0 0 chr6 122357877 122357913 -60057329 + U2 snRNA snRNA 1 36 -152 189 94 0 0 chr6 122358182 122358214 -60057028 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1439 207 34 34 chr6 122359483 122359778 -60055464 - AluJo SINE Alu -17 295 1 200 286 33 55 chr6 122359782 122359873 -60055369 + MIR SINE MIR 124 212 -50 363 279 63 89 chr6 122360493 122360730 -60054512 - MLT1K LTR MaLR -2 586 356 1013 155 64 64 chr6 122361143 122361440 -60053802 + MER33 DNA MER1_type 28 324 0 207 324 29 0 chr6 122364367 122364435 -60050807 + L3b LINE CR1 1416 1485 -98 511 320 34 0 chr6 122364755 122364930 -60050312 - MIR SINE MIR -25 237 57 283 169 15 15 chr6 122364936 122365001 -60050241 - MLT1D LTR MaLR -3 502 438 1361 164 9 0 chr6 122365001 122365215 -60050027 + AluJo SINE Alu 61 276 -36 180 77 0 0 chr6 122365223 122365249 -60049993 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1439 241 88 24 chr6 122365249 122365668 -60049574 - MLT1D LTR MaLR -59 446 1 195 289 144 11 chr6 122365838 122365928 -60049314 + MIR SINE MIR 23 124 -84 817 143 8 8 chr6 122366067 122366200 -60049042 - FLAM_C SINE Alu 0 133 1 1359 263 75 17 chr6 122366236 122366594 -60048648 - MLT1F LTR MaLR -163 379 1 1003 261 109 13 chr6 122366662 122367038 -60048204 - MER39 LTR ERV1 0 707 296 266 274 10 69 chr6 122367047 122367149 -60048093 - LTR48B LTR ERV1 -526 96 1 185 382 10 10 chr6 122367740 122367842 -60047400 - L2 LINE L2 -17 3255 3154 303 259 28 28 chr6 122368299 122368407 -60046835 + L2 LINE L2 3191 3298 -15 268 324 66 15 chr6 122368493 122368629 -60046613 + MIR SINE MIR 82 224 -38 380 356 88 77 chr6 122368798 122369368 -60045874 - L2 LINE L2 -10 3262 2690 244 302 237 23 chr6 122369570 122369785 -60045457 - L2 LINE L2 -688 2626 2366 1504 203 68 47 chr6 122370397 122370869 -60044373 - MLT1D LTR MaLR 0 505 24 545 246 37 18 chr6 122371648 122371916 -60043326 + L1ME1 LINE L1 3663 3931 -2215 1773 195 8 14 chr6 122371952 122372075 -60043167 + MLT1A1 LTR MaLR 11 133 -232 1352 166 114 13 chr6 122372075 122372382 -60042860 + MER44D DNA MER2_type 2 609 0 1773 195 8 14 chr6 122372382 122372612 -60042630 + MLT1A1 LTR MaLR 133 362 -3 895 203 37 59 chr6 122372613 122372968 -60042274 + L1ME1 LINE L1 4963 5309 -837 1933 151 10 0 chr6 122372972 122373264 -60041978 + AluSx SINE Alu 6 300 -12 2885 145 153 34 chr6 122373265 122373458 -60041784 - L1P LINE L1 -923 5223 5054 342 0 0 0 chr6 122373458 122373496 -60041746 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1961 142 3 0 chr6 122373500 122373788 -60041454 - AluSx SINE Alu -23 289 1 2885 145 153 34 chr6 122373788 122374231 -60041011 - L1P LINE L1 -1094 5052 4506 5622 96 18 46 chr6 122374241 122374759 -60040483 + L1PA10 LINE L1 5254 5736 -432 2387 125 0 0 chr6 122374759 122375071 -60040171 + AluSx SINE Alu 1 312 0 5622 96 18 46 chr6 122375071 122375489 -60039753 + L1PA10 LINE L1 5736 6164 -4 21 0 0 0 chr6 122375489 122375510 -60039732 + AT_rich Low_complexity Low_complexity 1 21 0 1455 263 72 15 chr6 122375512 122376055 -60039187 + L1ME1 LINE L1 5588 6161 -5 731 174 145 0 chr6 122378445 122378715 -60036527 - MER33 DNA MER1_type 0 363 1 240 35 0 0 chr6 122379574 122379603 -60035639 + (TA)n Simple_repeat Simple_repeat 2 30 0 928 156 0 11 chr6 122379943 122380123 -60035119 + MER96B DNA MER1_type? 1 178 -239 6970 140 15 11 chr6 122380362 122380729 -60034513 - Tigger3b DNA MER2_type -1797 1231 867 3266 131 2 14 chr6 122380729 122381232 -60034010 + LOR1a LTR ERV1 1 497 0 6970 140 15 11 chr6 122381232 122382090 -60033152 - Tigger3b DNA MER2_type -2161 867 2 324 337 20 0 chr6 122383322 122383420 -60031822 + L2 LINE L2 3168 3267 -5 228 146 18 36 chr6 122384268 122384323 -60030919 - MLT1E1 LTR MaLR -5 619 566 978 239 27 43 chr6 122384350 122384651 -60030591 - MLT1E1 LTR MaLR -54 600 305 218 148 19 0 chr6 122384651 122384705 -60030537 + CT-rich Low_complexity Low_complexity 1 55 0 2146 136 11 37 chr6 122384711 122385085 -60030157 + THE1B LTR MaLR 1 364 0 246 246 49 0 chr6 122385088 122385149 -60030093 - MLT1E LTR MaLR -406 187 124 452 218 120 28 chr6 122385163 122385305 -60029937 - MLT1E LTR MaLR -438 155 1 639 274 48 14 chr6 122387727 122387935 -60027307 - MER58C DNA MER1_type 0 215 1 24 0 0 0 chr6 122387971 122387995 -60027247 + AT_rich Low_complexity Low_complexity 1 24 0 2121 141 0 0 chr6 122388095 122388394 -60026848 + AluSx SINE Alu 1 299 -13 1937 180 69 0 chr6 122389571 122389948 -60025294 + MER57A LTR ERV1 1 403 0 605 242 68 6 chr6 122389960 122390121 -60025121 - MIR SINE MIR -84 178 8 22 0 0 0 chr6 122391174 122391196 -60024046 + AT_rich Low_complexity Low_complexity 1 22 0 2102 142 15 45 chr6 122391679 122391962 -60023280 + MLT1B LTR MaLR 1 270 -120 1912 125 14 20 chr6 122391962 122392258 -60022984 + AluSg SINE Alu 1 294 -16 2102 142 15 45 chr6 122392258 122392376 -60022866 + MLT1B LTR MaLR 270 390 0 21 0 0 0 chr6 122392691 122392712 -60022530 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 122393099 122393130 -60022112 + AT_rich Low_complexity Low_complexity 1 31 0 1125 215 68 49 chr6 122393372 122393739 -60021503 - MLT1A2 LTR MaLR 0 374 1 183 309 144 10 chr6 122393998 122394095 -60021147 + MIR SINE MIR 146 255 -7 346 340 115 13 chr6 122394683 122394918 -60020324 - MIR SINE MIR 0 262 4 190 355 112 12 chr6 122395143 122395402 -60019840 - L2 LINE L2 -719 2595 2311 423 234 221 61 chr6 122396090 122396321 -60018921 - MLT1J LTR MaLR -173 338 71 6846 48 2 0 chr6 122397865 122398695 -60016547 + L1PA5 LINE L1 5310 6141 -13 26 64 0 0 chr6 122398695 122398742 -60016500 + AT_rich Low_complexity Low_complexity 1 47 0 1844 136 48 0 chr6 122398748 122399021 -60016221 + AluSx SINE Alu 1 286 -26 301 277 139 0 chr6 122399739 122399840 -60015402 + L2 LINE L2 3158 3272 0 1288 245 165 46 chr6 122399874 122400396 -60014846 + L2 LINE L2 1859 2442 -872 249 278 56 11 chr6 122400451 122400541 -60014701 - LTR33A LTR ERVL -361 162 69 462 255 97 125 chr6 122400620 122400730 -60014512 + L2 LINE L2 2611 2723 -590 5290 44 2 0 chr6 122400730 122401363 -60013879 - L1PA6 LINE L1 -15 6139 5506 462 255 97 125 chr6 122401363 122401766 -60013476 + L2 LINE L2 2723 3118 -195 2143 102 3 0 chr6 122402113 122402397 -60012845 + AluY SINE Alu 1 285 -26 4125 164 37 17 chr6 122402463 122402792 -60012450 - L1MA8 LINE L1 -172 7079 6758 210 91 0 0 chr6 122402792 122402825 -60012417 + (TG)n Simple_repeat Simple_repeat 2 34 0 4125 164 37 17 chr6 122402825 122403855 -60011387 - L1MA8 LINE L1 -493 6758 5689 2625 219 60 24 chr6 122403862 122405096 -60010146 - L1MA8 LINE L1 -4521 2516 1226 242 28 0 28 chr6 122405096 122405132 -60010110 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 1925 147 37 0 chr6 122405192 122405491 -60009751 - AluSx SINE Alu -2 310 1 209 279 58 48 chr6 122405501 122405605 -60009637 + L2 LINE L2 3169 3273 -40 704 292 46 38 chr6 122405826 122406199 -60009043 - MLT1K LTR MaLR -14 574 199 442 261 28 51 chr6 122406471 122406647 -60008595 + MIR3 SINE MIR 20 191 -17 327 309 154 0 chr6 122406857 122406967 -60008275 - MER5A DNA MER1_type -3 186 60 23 0 0 0 chr6 122458311 122458334 -59956908 + AT_rich Low_complexity Low_complexity 1 23 0 228 265 200 53 chr6 122458608 122458778 -59956464 - MIR SINE MIR -66 196 2 1255 151 44 24 chr6 122459361 122459612 -59955630 + L1MC1 LINE L1 6066 6321 -12 6623 126 17 27 chr6 122459815 122461003 -59954239 - Tigger3b DNA MER2_type -55 1176 1 810 215 37 12 chr6 122461126 122461289 -59953953 + MER5A DNA MER1_type 23 189 0 318 294 53 77 chr6 122461140 122461310 -59953932 - MER5A DNA MER1_type -23 166 1 * 393 252 110 8 chr6 122461411 122461538 -59953704 + MIR SINE MIR 122 261 -1 640 275 90 20 chr6 122462389 122462633 -59952609 - MIR SINE MIR 0 262 2 23 33 0 0 chr6 122462722 122462752 -59952490 + AT_rich Low_complexity Low_complexity 1 30 0 855 250 0 0 chr6 122463199 122463375 -59951867 + MER45A DNA AcHobo 3 178 0 301 209 76 38 chr6 122463547 122463652 -59951590 + MER5C DNA MER1_type 9 117 -207 369 230 53 18 chr6 122463682 122463795 -59951447 + MER5C DNA MER1_type 208 324 0 188 234 0 16 chr6 122465023 122465087 -59950155 + GA-rich Low_complexity Low_complexity 4 66 0 2025 132 132 8 chr6 122465592 122465970 -59949272 + MSTA LTR MaLR 1 425 -3 318 50 0 0 chr6 122465970 122466010 -59949232 + (CA)n Simple_repeat Simple_repeat 2 41 0 785 176 8 8 chr6 122466157 122466288 -59948954 + FLAM_C SINE Alu 1 131 -2 1808 174 0 7 chr6 122467178 122467476 -59947766 + AluJo SINE Alu 1 296 -16 863 237 84 75 chr6 122468497 122469045 -59946197 - MLT1H1 LTR MaLR -2 553 1 468 81 0 0 chr6 122469192 122469286 -59945956 - AluSg/x SINE Alu 0 311 218 2355 43 0 4 chr6 122469310 122469611 -59945631 - AluY SINE Alu 0 300 1 21 0 0 0 chr6 122470338 122470359 -59944883 + AT_rich Low_complexity Low_complexity 1 21 0 1949 227 45 4 chr6 122470592 122471076 -59944166 - L1MC4a LINE L1 -342 7466 6963 247 211 19 0 chr6 122471080 122471132 -59944110 + MER5B DNA MER1_type 126 178 0 527 172 10 20 chr6 122471647 122471746 -59943496 + MER5A DNA MER1_type 9 106 -83 796 223 21 43 chr6 122471914 122472102 -59943140 + MER5A DNA MER1_type 1 184 -5 271 140 9 246 chr6 122472114 122472228 -59943014 - MER5B DNA MER1_type 0 178 92 7250 227 81 40 chr6 122472245 122473157 -59942085 + L1ME1 LINE L1 2682 3554 -2612 4606 110 30 1 chr6 122473157 122473829 -59941413 + LTR8 LTR ERV1 1 691 0 7250 227 81 40 chr6 122473829 122476203 -59939039 + L1ME1 LINE L1 3554 6103 -63 413 154 308 0 chr6 122476138 122476242 -59939000 + L1MA10 LINE L1 6198 6333 -1 * 442 200 0 148 chr6 122476289 122476374 -59938868 - MER5B DNA MER1_type -45 133 37 234 0 0 0 chr6 122476374 122476400 -59938842 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2053 64 0 4 chr6 122476404 122476654 -59938588 - AluY SINE Alu -62 249 1 442 200 0 148 chr6 122476654 122476718 -59938524 - MER5B DNA MER1_type -144 34 2 851 209 0 0 chr6 122477029 122477177 -59938065 + FRAM SINE Alu 1 148 -18 1657 175 16 48 chr6 122478022 122478336 -59936906 + AluJb SINE Alu 1 304 -8 2313 89 0 7 chr6 122478588 122478890 -59936352 - AluSx SINE Alu -12 300 1 4234 98 13 2 chr6 122478910 122479525 -59935717 - L1PA10 LINE L1 -1 6167 5546 314 244 39 0 chr6 122479851 122479929 -59935313 + MER94 DNA DNA 1 81 -53 534 262 55 22 chr6 122481524 122481707 -59933535 - MER91B DNA MER1_type 0 190 2 242 333 17 43 chr6 122482723 122482840 -59932402 + MIR SINE MIR 40 153 -55 247 306 0 0 chr6 122483816 122483878 -59931364 + MIR3 SINE MIR 119 180 -28 266 260 67 19 chr6 122483910 122484014 -59931228 + MIR SINE MIR 15 123 -139 1435 206 179 20 chr6 122484437 122484884 -59930358 + MLT1E LTR MaLR 74 591 -2 1819 139 0 4 chr6 122485447 122485706 -59929536 + AluSx SINE Alu 33 290 -22 42818 35 21 1 chr6 122486265 122492295 -59922947 + L1PA2 LINE L1 2 6153 -2 270 95 0 0 chr6 122492596 122492638 -59922604 + (TG)n Simple_repeat Simple_repeat 2 43 0 396 0 0 0 chr6 122492808 122492852 -59922390 + (TG)n Simple_repeat Simple_repeat 2 45 0 240 163 0 0 chr6 122492853 122492896 -59922346 + (TA)n Simple_repeat Simple_repeat 1 43 0 2025 143 0 0 chr6 122493299 122493599 -59921643 + AluSx SINE Alu 1 300 -12 577 250 61 177 chr6 122495136 122495330 -59919912 - HAL1 LINE L1 -7 2500 2285 1747 170 56 0 chr6 122495330 122495654 -59919588 - MER2 DNA MER2_type -1 343 2 577 250 61 177 chr6 122495654 122495803 -59919439 - HAL1 LINE L1 -222 2285 2120 2065 152 33 0 chr6 122495803 122496139 -59919103 - MER7A DNA MER2_type 0 346 2 577 250 61 177 chr6 122496139 122496258 -59918984 - HAL1 LINE L1 -387 2120 1989 1883 166 0 0 chr6 122496258 122496548 -59918694 + AluSx SINE Alu 2 291 -21 577 250 61 177 chr6 122496548 122497036 -59918206 - HAL1 LINE L1 -518 1989 1659 530 256 67 10 chr6 122497170 122497407 -59917835 + MLT1J1 LTR MaLR 124 394 -41 512 278 139 58 chr6 122497413 122498038 -59917204 - HAL1 LINE L1 -885 1622 947 311 276 37 43 chr6 122498620 122498783 -59916459 - L1ME4a LINE L1 -3 6536 6375 496 308 56 20 chr6 122498861 122499166 -59916076 - L1ME4a LINE L1 -293 6246 5931 854 308 35 25 chr6 122499452 122499819 -59915423 - Tigger8 DNA MER2_type -235 431 61 270 306 44 11 chr6 122499850 122500033 -59915209 - L1ME4a LINE L1 -727 5861 5673 2065 135 140 8 chr6 122500155 122500533 -59914709 + MSTA LTR MaLR 1 428 0 14285 194 41 26 chr6 122500589 122501417 -59913825 + L1MA6 LINE L1 2752 3565 -4048 2180 127 3 0 chr6 122501417 122501725 -59913517 + AluSq SINE Alu 1 309 -4 14285 194 41 26 chr6 122501725 122504933 -59910309 + L1MA6 LINE L1 3565 6870 -743 7219 28 10 0 chr6 122504935 122506248 -59908994 + L1PA3 LINE L1 4844 6171 0 4986 139 19 6 chr6 122506248 122507112 -59908130 + L1MA6 LINE L1 6843 7717 -2 421 295 47 106 chr6 122507232 122507343 -59907899 - L1ME4a LINE L1 -1172 5392 5276 1815 160 3 39 chr6 122507343 122507649 -59907593 + AluJb SINE Alu 3 297 -15 421 295 47 106 chr6 122507649 122507971 -59907271 - L1ME4a LINE L1 -1288 5276 4989 1674 197 0 10 chr6 122507971 122508270 -59906972 + AluJo SINE Alu 1 296 -16 421 295 47 106 chr6 122508270 122508326 -59906916 - L1ME4a LINE L1 -1575 4989 4931 2176 128 7 0 chr6 122508605 122508910 -59906332 - AluSx SINE Alu -5 307 1 336 158 0 53 chr6 122509643 122509719 -59905523 - AluSp/q SINE Alu -1 302 231 2010 118 0 0 chr6 122509719 122509989 -59905253 - AluSq SINE Alu -43 270 1 482 314 161 37 chr6 122510092 122510497 -59904745 - L1ME4a LINE L1 -2469 4095 3641 29 0 0 0 chr6 122510645 122510674 -59904568 + AT_rich Low_complexity Low_complexity 1 29 0 227 279 104 43 chr6 122510674 122511118 -59904124 - L1ME4a LINE L1 -4964 1081 902 313 273 55 66 chr6 122511530 122511713 -59903529 - L1ME4a LINE L1 -5888 666 486 207 263 0 0 chr6 122511757 122511814 -59903428 + T-rich Low_complexity Low_complexity 3 59 0 481 316 81 68 chr6 122512083 122512555 -59902687 + MLT1K LTR MaLR 111 588 0 304 279 101 0 chr6 122512703 122512782 -59902460 + L2 LINE L2 3216 3302 -11 27 0 0 0 chr6 122512797 122512824 -59902418 + AT_rich Low_complexity Low_complexity 1 27 0 203 269 141 13 chr6 122513165 122513243 -59901999 + MIR3 SINE MIR 121 208 0 194 345 17 34 chr6 122515060 122515179 -59900063 + L3b LINE CR1 1362 1478 -105 2213 196 30 20 chr6 122515640 122516100 -59899142 - MLT1C LTR MaLR -2 465 1 489 285 13 33 chr6 122516550 122516701 -59898541 - MIR3 SINE MIR -1 207 60 2278 112 0 0 chr6 122517111 122517407 -59897835 + AluSg SINE Alu 1 296 -14 198 297 109 59 chr6 122518585 122518686 -59896556 - L2 LINE L2 -12 3260 3155 1566 164 41 20 chr6 122518984 122519277 -59895965 - AluJo SINE Alu -13 299 1 252 100 0 0 chr6 122519282 122519322 -59895920 + (TA)n Simple_repeat Simple_repeat 2 41 0 339 274 0 20 chr6 122519322 122519424 -59895818 + L1MC4 LINE L1 6604 6703 -1339 292 308 20 0 chr6 122521763 122521883 -59893359 - L1ME LINE L1 -504 5658 5536 2068 135 0 0 chr6 122521978 122522266 -59892976 + AluSx SINE Alu 6 293 -19 608 302 45 89 chr6 122522284 122522829 -59892413 - L1ME LINE L1 -751 5395 4874 1633 191 6 35 chr6 122522829 122523148 -59892094 - AluJo SINE Alu -2 310 1 608 302 45 89 chr6 122523148 122523161 -59892081 - L1ME LINE L1 -1272 4874 4862 229 311 68 6 chr6 122523205 122523382 -59891860 - L1ME LINE L1 -1328 4818 4631 920 187 22 6 chr6 122523898 122524080 -59891162 - MER5A DNA MER1_type 0 189 5 682 157 15 22 chr6 122524211 122524345 -59890897 + FLAM_C SINE Alu 1 133 0 440 250 47 34 chr6 122525060 122525208 -59890034 + MIR SINE MIR 20 169 -93 1258 193 108 29 chr6 122525653 122526062 -59889180 - HsTC2 DNA Tc2 0 1898 1282 277 227 273 0 chr6 122526060 122526170 -59889072 - HsTC2 DNA Tc2 -1754 144 5 * 1745 126 51 39 chr6 122527015 122527348 -59887894 - MER1B DNA MER1_type 0 337 1 2080 131 3 0 chr6 122527442 122527739 -59887503 + AluSq SINE Alu 1 298 -15 27 0 0 0 chr6 122527746 122527773 -59887469 + AT_rich Low_complexity Low_complexity 1 27 0 2182 127 0 0 chr6 122528004 122528303 -59886939 - AluSx SINE Alu -13 299 1 225 65 0 0 chr6 122528303 122528334 -59886908 + (T)n Simple_repeat Simple_repeat 1 31 0 1134 128 0 6 chr6 122528366 122528522 -59886720 - AluSq SINE Alu -95 218 64 2141 130 0 13 chr6 122530217 122530533 -59884709 - AluSx SINE Alu 0 312 1 320 289 47 13 chr6 122530688 122530923 -59884319 - L1ME LINE L1 -646 5518 5276 448 286 75 46 chr6 122531313 122531769 -59883473 + MLT1H LTR MaLR 1 549 0 361 286 67 46 chr6 122531848 122532086 -59883156 + MLT1J LTR MaLR 36 278 -233 854 229 0 0 chr6 122532466 122532632 -59882610 + FRAM SINE Alu 1 166 0 1433 173 34 11 chr6 122532731 122532997 -59882245 + AluJo SINE Alu 5 276 -36 211 104 62 0 chr6 122533015 122533063 -59882179 + (TA)n Simple_repeat Simple_repeat 1 51 0 603 208 28 15 chr6 122533186 122533309 -59881933 + CT-rich Low_complexity Low_complexity 1 121 -601 2067 92 33 0 chr6 122533309 122533582 -59881660 - AluSq SINE Alu -7 306 25 603 208 28 15 chr6 122533582 122533600 -59881642 + CT-rich Low_complexity Low_complexity 121 137 -585 1326 33 6 22 chr6 122533600 122533782 -59881460 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 603 208 28 15 chr6 122533782 122533899 -59881343 + CT-rich Low_complexity Low_complexity 137 722 0 396 0 0 0 chr6 122533915 122533959 -59881283 + (TG)n Simple_repeat Simple_repeat 2 45 0 756 277 66 73 chr6 122534066 122534488 -59880754 + MLT1J1 LTR MaLR 26 444 -2 818 130 1 6 chr6 122534496 122534648 -59880594 + L1PA14 LINE L1 5891 6038 -123 239 269 9 37 chr6 122534850 122534958 -59880284 + CT-rich Low_complexity Low_complexity 3 107 0 2105 144 0 0 chr6 122535042 122535372 -59879870 - AluSx SINE Alu 0 312 1 279 83 50 0 chr6 122535854 122535914 -59879328 + (TA)n Simple_repeat Simple_repeat 2 64 0 681 75 9 9 chr6 122536180 122536286 -59878956 + L1PA14 LINE L1 5912 6017 -144 230 217 29 0 chr6 122536332 122536401 -59878841 + (TA)n Simple_repeat Simple_repeat 2 72 0 745 214 6 60 chr6 122536422 122536604 -59878638 - MIR SINE MIR -81 181 10 192 40 0 0 chr6 122537236 122537261 -59877981 + (CAA)n Simple_repeat Simple_repeat 2 26 0 725 58 0 19 chr6 122537466 122537570 -59877672 + (TTTC)n Simple_repeat Simple_repeat 2 103 0 450 36 0 0 chr6 122540266 122540322 -59874920 + (TG)n Simple_repeat Simple_repeat 2 57 0 276 158 40 40 chr6 122540749 122540825 -59874417 + T-rich Low_complexity Low_complexity 5 80 0 2328 91 3 0 chr6 122540896 122541193 -59874049 + AluSg SINE Alu 1 298 -12 185 260 40 0 chr6 122541291 122541341 -59873901 + L2 LINE L2 3262 3313 0 202 57 0 57 chr6 122543454 122543489 -59871753 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 778 162 0 8 chr6 122543492 122543609 -59871633 - FLAM_C SINE Alu -17 116 1 333 68 0 0 chr6 122543811 122543855 -59871387 + (ATG)n Simple_repeat Simple_repeat 2 45 0 259 237 29 93 chr6 122544078 122544217 -59871025 - MLT1K LTR MaLR -1 587 458 288 327 26 45 chr6 122544478 122544634 -59870608 - MLT1K LTR MaLR -251 337 185 2138 138 0 0 chr6 122544926 122545237 -59870005 + AluSx SINE Alu 1 311 -1 845 148 0 77 chr6 122546014 122546169 -59869073 + FLAM_C SINE Alu 1 143 0 189 372 7 40 chr6 122546731 122546879 -59868363 - L2 LINE L2 -10 3303 3161 279 316 47 105 chr6 122546969 122547159 -59868083 - L2 LINE L2 -29 3243 3065 351 206 0 14 chr6 122547175 122547248 -59867994 - MER20 DNA MER1_type -147 72 1 601 155 116 0 chr6 122547665 122547794 -59867448 + MER69 DNA AcHobo 2380 2523 -3 224 389 65 9 chr6 122547906 122548014 -59867228 + L3b LINE CR1 1470 1583 0 298 227 0 15 chr6 122548384 122548450 -59866792 + MIR3 SINE MIR 10 74 -134 2139 138 36 33 chr6 122548539 122548902 -59866340 - THE1B LTR MaLR 0 364 1 530 224 94 47 chr6 122549216 122549255 -59865987 + MER5B DNA MER1_type 1 37 -141 3249 55 2 100 chr6 122549255 122549531 -59865711 - MLT2A1 LTR ERVL 0 444 235 2123 120 0 3 chr6 122549531 122549823 -59865419 - AluSx SINE Alu -21 291 1 3249 55 2 100 chr6 122549823 122550038 -59865204 - MLT2A1 LTR ERVL -209 235 1 530 224 94 47 chr6 122550038 122550168 -59865074 + MER5B DNA MER1_type 37 178 0 2060 125 0 3 chr6 122550302 122550590 -59864652 + AluSq SINE Alu 11 297 -16 1420 264 124 53 chr6 122550609 122551252 -59863990 + MER115 DNA AcHobo 3 691 -2 689 305 15 5 chr6 122552938 122553135 -59862107 + MIR SINE MIR 20 218 -44 1517 135 159 0 chr6 122553357 122553609 -59861633 + AluSx SINE Alu 1 292 -10 225 0 0 0 chr6 122555083 122555108 -59860134 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 191 358 34 27 chr6 122555616 122555764 -59859478 - L3b LINE CR1 -113 1470 1322 1906 125 144 6 chr6 122555832 122556192 -59859050 + MSTA LTR MaLR 1 410 -18 845 293 89 30 chr6 122556251 122556704 -59858538 + L2 LINE L2 2754 3251 -62 1620 197 22 70 chr6 122556704 122557120 -59858122 + MSTD LTR MaLR 1 396 0 845 293 89 30 chr6 122557120 122557178 -59858064 + L2 LINE L2 3251 3304 -9 203 240 40 0 chr6 122557150 122557200 -59858042 - L2 LINE L2 0 3313 3262 * 2074 162 0 0 chr6 122557419 122557727 -59857515 - AluSx SINE Alu -4 308 1 229 293 113 19 chr6 122558031 122558137 -59857105 + L2 LINE L2 3146 3261 -11 318 242 33 33 chr6 122558328 122558419 -59856823 - L1MC4 LINE L1 -1339 6703 6613 231 36 0 0 chr6 122558708 122558736 -59856506 + (GA)n Simple_repeat Simple_repeat 1 28 0 200 220 147 37 chr6 122559883 122559992 -59855250 + MIR SINE MIR 82 202 -60 210 321 28 46 chr6 122560258 122560367 -59854875 + L2 LINE L2 2568 2674 -640 224 282 110 92 chr6 122560825 122560988 -59854254 + L2 LINE L2 3107 3272 0 7309 1 0 0 chr6 122561041 122561889 -59853353 - L1HS LINE L1 0 6155 5308 7461 23 0 0 chr6 122561889 122562817 -59852425 + L1HS LINE L1 4382 5309 -837 296 229 239 9 chr6 122564400 122564509 -59850733 + MER94 DNA DNA 1 134 0 2338 110 0 0 chr6 122564787 122565096 -59850146 - AluSx SINE Alu -3 309 1 2809 90 0 5 chr6 122565367 122565744 -59849498 + THE1C LTR MaLR 1 375 0 447 19 0 0 chr6 122566978 122567030 -59848212 + (TG)n Simple_repeat Simple_repeat 2 53 0 767 178 0 0 chr6 122567565 122567683 -59847559 - FLAM_C SINE Alu -25 118 1 249 385 25 0 chr6 122568286 122568408 -59846834 - MIR SINE MIR -14 248 124 1739 183 44 152 chr6 122568572 122569350 -59845892 - LTR8A LTR ERV1 0 727 34 375 268 41 0 chr6 122570072 122570169 -59845073 + MIR SINE MIR 66 166 -96 226 275 28 101 chr6 122570470 122570648 -59844594 - MIR SINE MIR -50 212 48 1067 229 65 12 chr6 122571147 122571548 -59843694 + L1ME2 LINE L1 4349 4770 -1376 2368 216 96 62 chr6 122571590 122571638 -59843604 + L1ME2 LINE L1 5067 5112 -1052 31 0 0 0 chr6 122571638 122571669 -59843573 + AT_rich Low_complexity Low_complexity 1 31 0 2368 216 96 62 chr6 122571669 122572422 -59842820 + L1ME2 LINE L1 5112 5938 -226 2325 109 6 3 chr6 122572422 122572733 -59842509 + AluSq SINE Alu 1 312 -1 2368 216 96 62 chr6 122572733 122572957 -59842285 + L1ME2 LINE L1 5938 6153 -11 524 200 68 42 chr6 122573269 122573459 -59841783 - L1MC5 LINE L1 -34 7927 7733 431 301 102 39 chr6 122573484 122573740 -59841502 + L2 LINE L2 2936 3207 -106 242 260 250 0 chr6 122574272 122574368 -59840874 - L2 LINE L2 -3 3310 3191 2387 110 0 0 chr6 122574816 122575126 -59840116 - AluSx SINE Alu -2 310 1 2093 120 3 0 chr6 122576665 122576988 -59838254 + AluSx SINE Alu 1 324 0 252 100 0 0 chr6 122576990 122577030 -59838212 + (TA)n Simple_repeat Simple_repeat 1 40 0 349 203 14 0 chr6 122577038 122577107 -59838135 - L1MCa LINE L1 -4362 2064 1995 350 264 23 0 chr6 122577119 122577206 -59838036 + L1MC4 LINE L1 6614 6702 -1340 701 324 112 51 chr6 122577294 122578368 -59836874 + L2 LINE L2 2041 3262 -10 1374 148 46 78 chr6 122579005 122579288 -59835954 + AluJo SINE Alu 23 296 -16 180 135 0 0 chr6 122579556 122579593 -59835649 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 397 214 22 11 chr6 122580037 122580126 -59835116 + MIR SINE MIR 79 168 -94 2350 89 0 0 chr6 122580255 122580547 -59834695 - AluSx SINE Alu -20 292 1 648 208 0 0 chr6 122581460 122581590 -59833652 + FLAM_A SINE Alu 12 141 -1 320 229 114 38 chr6 122581808 122581939 -59833303 + MLT1I LTR MaLR 15 155 -254 617 173 75 0 chr6 122582206 122582339 -59832903 - MLT1D LTR MaLR -298 207 65 1534 207 0 24 chr6 122584011 122584306 -59830936 - AluJo SINE Alu -24 288 1 237 316 79 43 chr6 122584369 122584508 -59830734 + MLT1K LTR MaLR 1 144 -444 291 322 52 26 chr6 122584597 122584827 -59830415 + MLT1K LTR MaLR 311 546 -42 237 154 0 0 chr6 122585752 122585791 -59829451 + Alu SINE Alu 252 290 -12 216 0 0 0 chr6 122585876 122585900 -59829342 + (CA)n Simple_repeat Simple_repeat 2 25 0 378 276 144 28 chr6 122586823 122587004 -59828238 - MIR SINE MIR -14 248 47 334 279 116 11 chr6 122587135 122587298 -59827944 + MIR3 SINE MIR 15 197 -11 912 182 0 0 chr6 122588139 122588282 -59826960 - AluJ SINE Alu -6 306 164 566 136 0 0 chr6 122588287 122588368 -59826874 + AluJ/FLAM SINE Alu 4 84 -228 995 134 76 13 chr6 122588368 122588525 -59826717 - AluJ SINE Alu -135 177 11 412 134 0 30 chr6 122588543 122588610 -59826632 - AluJ/FLAM SINE Alu -247 65 1 237 234 47 31 chr6 122589005 122589133 -59826109 - Charlie7 DNA MER1_type -18 2594 2465 31 58 0 0 chr6 122589137 122589189 -59826053 + AT_rich Low_complexity Low_complexity 1 52 0 271 307 139 7 chr6 122591398 122591535 -59823707 - MIR SINE MIR -86 176 22 215 263 35 0 chr6 122591713 122591770 -59823472 + L2 LINE L2 3205 3263 -9 1664 186 0 29 chr6 122591809 122592120 -59823122 + AluJo SINE Alu 1 302 -10 758 40 0 10 chr6 122592475 122592574 -59822668 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 613 163 14 92 chr6 122592585 122592608 -59822634 - FLAM_A SINE Alu -169 133 110 2367 115 0 0 chr6 122592608 122592920 -59822322 - AluSq SINE Alu -1 312 1 613 163 14 92 chr6 122592920 122593037 -59822205 - FLAM_A SINE Alu -192 110 4 272 229 71 0 chr6 122593871 122593941 -59821301 + MIR SINE MIR 117 191 -71 305 232 30 20 chr6 122593941 122594040 -59821202 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 2143 139 0 0 chr6 122594319 122594620 -59820622 + AluSx SINE Alu 1 301 -11 21 57 0 0 chr6 122595823 122595858 -59819384 + AT_rich Low_complexity Low_complexity 1 35 0 1554 168 22 19 chr6 122595889 122596157 -59819085 + AluJo SINE Alu 37 305 -7 2237 118 0 3 chr6 122596159 122596464 -59818778 + AluSq SINE Alu 1 304 -9 23 0 0 0 chr6 122596756 122596779 -59818463 + AT_rich Low_complexity Low_complexity 1 23 0 2325 92 7 3 chr6 122597102 122597406 -59817836 + AluSg SINE Alu 1 305 -5 547 277 75 33 chr6 122597667 122597880 -59817362 - MIR SINE MIR -38 224 3 2311 91 0 0 chr6 122599139 122599435 -59815807 + AluY SINE Alu 1 296 -15 1831 114 100 4 chr6 122600360 122600641 -59814601 - AluSx SINE Alu -4 308 1 186 43 0 0 chr6 122601737 122601760 -59813482 + (TA)n Simple_repeat Simple_repeat 2 24 0 2296 111 3 7 chr6 122601760 122602066 -59813176 - AluSx SINE Alu -7 305 1 2343 191 88 85 chr6 122602736 122603230 -59812012 + MLT1E1 LTR MaLR 1 499 -155 2369 97 0 3 chr6 122603230 122603541 -59811701 - AluSg SINE Alu 0 310 1 2343 191 88 85 chr6 122603541 122603696 -59811546 + MLT1E1 LTR MaLR 499 652 -2 203 327 59 52 chr6 122604877 122605030 -59810212 - MIR SINE MIR -62 200 47 864 285 70 63 chr6 122605852 122606311 -59808931 + LTR16B LTR ERVL 1 462 -2 2157 110 3 0 chr6 122606795 122607086 -59808156 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr6 122607086 122607108 -59808134 + (TA)n Simple_repeat Simple_repeat 2 23 0 2276 107 3 7 chr6 122607608 122607916 -59807326 + AluSp SINE Alu 1 307 -6 328 272 37 12 chr6 122608341 122608422 -59806820 - MIR3 SINE MIR -49 159 77 1553 140 126 29 chr6 122608534 122608701 -59806541 - THE1C LTR MaLR 0 375 226 225 0 0 0 chr6 122608701 122608726 -59806516 + (GA)n Simple_repeat Simple_repeat 2 26 0 1553 140 126 29 chr6 122608726 122608900 -59806342 - THE1C LTR MaLR -149 226 1 206 291 55 0 chr6 122609011 122609066 -59806176 - L2 LINE L2 -94 3219 3162 746 304 73 4 chr6 122610142 122610542 -59804700 + L1ME4a LINE L1 5485 5825 -296 599 149 0 0 chr6 122611795 122611882 -59803360 + FLAM_A SINE Alu 20 106 -36 2125 148 0 0 chr6 122611914 122612205 -59803037 - AluJb SINE Alu -21 291 1 2489 72 0 3 chr6 122612243 122612547 -59802695 + AluY SINE Alu 1 303 -8 181 212 0 0 chr6 122613024 122613057 -59802185 + L2 LINE L2 3262 3294 -19 1098 361 119 24 chr6 122613400 122614825 -59800417 + L2 LINE L2 928 2496 -818 342 67 0 0 chr6 122614825 122614870 -59800372 + (CA)n Simple_repeat Simple_repeat 1 45 0 1098 361 119 24 chr6 122614870 122614900 -59800342 + L2 LINE L2 2496 2522 -792 2436 99 0 3 chr6 122615796 122616108 -59799134 - AluY SINE Alu 0 311 1 230 49 0 49 chr6 122616160 122616201 -59799041 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1063 138 11 58 chr6 122616213 122616402 -59798840 - AluSq SINE Alu -8 305 126 1032 159 121 19 chr6 122616541 122616798 -59798444 + Tigger3(Golem) DNA MER2_type 2482 2764 -265 873 153 0 0 chr6 122616801 122616938 -59798304 - FLAM_C SINE Alu -6 137 1 1200 163 120 0 chr6 122616938 122617196 -59798046 + Tigger3(Golem) DNA MER2_type 2740 3028 -1 214 237 132 0 chr6 122618368 122618444 -59796798 - MIR3 SINE MIR -10 198 113 1668 172 13 30 chr6 122618921 122619223 -59796019 + AluJo SINE Alu 1 297 -15 369 0 0 0 chr6 122619267 122619308 -59795934 + (CA)n Simple_repeat Simple_repeat 2 42 0 2523 82 0 0 chr6 122620634 122620939 -59794303 - AluSg SINE Alu -5 305 1 2118 129 10 0 chr6 122621483 122621792 -59793450 + AluSx SINE Alu 1 312 0 624 106 0 0 chr6 122621811 122621905 -59793337 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 1171 50 11 22 chr6 122621914 122622093 -59793149 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 21 36 0 0 chr6 122622527 122622555 -59792687 + AT_rich Low_complexity Low_complexity 1 28 0 2431 83 3 0 chr6 122623006 122623308 -59791934 + AluSp SINE Alu 3 305 -8 506 181 29 148 chr6 122623362 122623605 -59791637 - MIR SINE MIR -4 258 45 536 238 14 20 chr6 122625278 122625425 -59789817 - MIR SINE MIR -6 256 111 2216 132 0 0 chr6 122625678 122625988 -59789254 - AluSx SINE Alu -2 310 1 197 328 48 56 chr6 122626705 122626830 -59788412 + L2 LINE L2 3141 3264 -8 302 45 23 0 chr6 122627011 122627055 -59788187 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 438 154 0 0 chr6 122627517 122627595 -59787647 + GA-rich Low_complexity Low_complexity 4 81 0 1099 198 11 0 chr6 122628525 122628712 -59786530 - MER5A DNA MER1_type 0 189 1 797 216 0 0 chr6 122629904 122630038 -59785204 - AluJo SINE Alu -177 135 2 390 216 80 40 chr6 122630296 122630421 -59784821 + MER58C DNA MER1_type 75 204 -11 1649 169 0 66 chr6 122630421 122630740 -59784502 + AluJb SINE Alu 1 298 -14 2022 98 42 3 chr6 122630741 122631026 -59784216 + AluSq SINE Alu 1 296 -17 1610 213 55 3 chr6 122631229 122631572 -59783670 + MLT1A1 LTR MaLR 4 364 -1 1874 163 3 10 chr6 122631755 122632050 -59783192 - AluSx SINE Alu -19 293 1 1308 233 99 48 chr6 122632137 122632653 -59782589 + MLT1F LTR MaLR 1 542 0 220 289 0 0 chr6 122633074 122633126 -59782116 + (CA)n Simple_repeat Simple_repeat 1 52 0 1658 168 25 11 chr6 122633366 122633679 -59781563 + AluJb SINE Alu 1 317 0 186 148 0 0 chr6 122633830 122633857 -59781385 + MIR SINE MIR 20 46 -216 2130 117 0 3 chr6 122634072 122634371 -59780871 + AluSx SINE Alu 3 300 -12 404 308 105 6 chr6 122634522 122634694 -59780548 + MIR SINE MIR 31 219 -43 267 339 87 0 chr6 122634708 122634823 -59780419 + L2 LINE L2 3189 3313 0 815 229 0 45 chr6 122634826 122635005 -59780237 + FRAM SINE Alu 1 171 -5 867 142 7 28 chr6 122635052 122635193 -59780049 - FLAM_C SINE Alu -4 139 2 28 0 0 0 chr6 122635253 122635281 -59779961 + AT_rich Low_complexity Low_complexity 1 28 0 2790 198 20 61 chr6 122635287 122635506 -59779736 + L1MA9 LINE L1 2467 2693 -3453 1766 164 3 50 chr6 122635506 122635829 -59779413 - AluJb SINE Alu -4 308 1 2790 198 20 61 chr6 122635829 122636318 -59778924 + L1MA9 LINE L1 2693 3146 -3000 * 5731 159 29 40 chr6 122636299 122637443 -59777799 + L1MA9 LINE L1 4781 5916 -396 2368 91 3 3 chr6 122637443 122637750 -59777492 + AluSg SINE Alu 1 307 -3 5731 159 29 40 chr6 122637750 122638143 -59777099 + L1MA9 LINE L1 5916 6312 0 2053 122 7 7 chr6 122638193 122638487 -59776755 + AluSg1 SINE Alu 1 294 -15 1983 129 0 60 chr6 122639057 122639375 -59775867 - AluSx SINE Alu -13 299 1 792 357 72 6 chr6 122639495 122639994 -59775248 - MLT1K LTR MaLR -22 566 35 23 33 0 0 chr6 122640345 122640375 -59774867 + AT_rich Low_complexity Low_complexity 1 30 0 1104 191 93 8 chr6 122642123 122642359 -59772883 - AluJo SINE Alu -56 256 1 1281 201 88 19 chr6 122642362 122642670 -59772572 - MLT1D LTR MaLR -175 330 2 1901 101 94 0 chr6 122642909 122643176 -59772066 + AluSp SINE Alu 1 292 -21 1852 152 20 10 chr6 122643176 122643473 -59771769 + AluSx SINE Alu 1 300 -12 2201 116 3 0 chr6 122643947 122644250 -59770992 + AluSx SINE Alu 1 304 -8 2228 104 14 0 chr6 122644250 122644539 -59770703 + AluSx SINE Alu 1 293 -19 2421 83 0 10 chr6 122644789 122645101 -59770141 + AluSx SINE Alu 1 309 -3 2223 97 10 0 chr6 122645359 122645657 -59769585 + AluSp SINE Alu 2 302 -11 25 0 0 0 chr6 122646411 122646436 -59768806 + AT_rich Low_complexity Low_complexity 1 25 0 23 78 0 0 chr6 122646463 122646514 -59768728 + AT_rich Low_complexity Low_complexity 1 51 0 691 188 8 8 chr6 122646899 122647016 -59768226 + FLAM_C SINE Alu 2 118 -15 21 0 0 0 chr6 122647023 122647044 -59768198 + AT_rich Low_complexity Low_complexity 1 21 0 1710 169 0 11 chr6 122647092 122647401 -59767841 - AluJb SINE Alu 0 306 1 706 234 35 55 chr6 122647412 122647613 -59767629 - MIR SINE MIR -46 216 20 752 220 0 50 chr6 122647662 122647803 -59767439 + FRAM SINE Alu 3 136 -40 215 0 67 0 chr6 122647807 122647837 -59767405 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 605 125 0 0 chr6 122648321 122648409 -59766833 + FLAM_C SINE Alu 49 136 -7 186 250 19 0 chr6 122648681 122648733 -59766509 - L2 LINE L2 -5 3267 3215 963 218 6 28 chr6 122648739 122648918 -59766324 - MER45A DNA AcHobo -3 175 1 355 333 79 44 chr6 122649080 122649422 -59765820 + L2 LINE L2 2541 2894 -420 362 119 0 0 chr6 122649861 122649929 -59765313 + Alu SINE Alu 2 48 -255 293 356 0 0 chr6 122650344 122650445 -59764797 - L2 LINE L2 0 3272 3172 2089 95 0 0 chr6 122650492 122650755 -59764487 + AluSc SINE Alu 1 263 -46 209 29 0 57 chr6 122650804 122650839 -59764403 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 257 300 67 56 chr6 122651100 122651280 -59763962 - MIR SINE MIR -46 216 35 2135 112 30 0 chr6 122651789 122652085 -59763157 - AluSg SINE Alu -5 305 1 193 245 112 31 chr6 122652240 122652338 -59762904 - L2 LINE L2 -4 3309 3204 424 305 110 15 chr6 122652373 122652573 -59762669 - MIR SINE MIR -37 225 7 770 62 1 5 chr6 122653763 122653873 -59761369 + L1PA4 LINE L1 6049 6155 0 261 352 27 16 chr6 122654067 122654222 -59761020 - MIR SINE MIR -38 224 65 251 203 0 0 chr6 122654508 122654567 -59760675 - LTR66 LTR ERVL -172 438 380 * 2587 127 2 20 chr6 122654558 122654961 -59760281 - MER65A LTR ERV1 -49 396 1 2282 85 0 0 chr6 122655426 122655707 -59759535 - AluSg SINE Alu -29 281 1 241 317 145 14 chr6 122655729 122655874 -59759368 - MIR SINE MIR -93 169 6 743 234 0 0 chr6 122655975 122656099 -59759143 + FLAM_A SINE Alu 1 124 -9 1294 147 4 43 chr6 122656112 122656343 -59758899 + L1PA16 LINE L1 5945 6166 0 524 122 14 0 chr6 122656366 122656440 -59758802 - AluS SINE Alu -236 76 2 2219 129 3 0 chr6 122656449 122656800 -59758442 - AluSg SINE Alu 0 352 1 350 334 112 65 chr6 122656914 122657270 -59757972 - L2 LINE L2 -4 3268 2896 221 213 0 33 chr6 122657509 122657570 -59757672 + GA-rich Low_complexity Low_complexity 1 59 0 260 297 19 119 chr6 122657776 122658045 -59757197 - L2 LINE L2 -98 3174 2933 2309 46 50 0 chr6 122658241 122658522 -59756720 + AluY SINE Alu 2 296 -15 2093 133 3 0 chr6 122658532 122658833 -59756409 - AluSp SINE Alu -11 302 1 2445 81 3 0 chr6 122658881 122659191 -59756051 - AluSp SINE Alu -2 311 1 372 309 116 22 chr6 122659420 122659601 -59755641 - MIR SINE MIR -8 254 57 309 266 65 59 chr6 122659799 122659968 -59755274 - L2 LINE L2 -1316 1998 1829 1630 142 4 41 chr6 122660432 122660699 -59754543 + AluJb SINE Alu 1 257 -55 429 185 15 0 chr6 122660699 122660764 -59754478 - AluS SINE Alu -246 67 2 204 97 0 0 chr6 122661000 122661031 -59754211 + (TATATG)n Simple_repeat Simple_repeat 3 33 0 28 0 0 0 chr6 122661511 122661539 -59753703 + AT_rich Low_complexity Low_complexity 1 28 0 237 65 0 0 chr6 122661561 122661592 -59753650 + (TA)n Simple_repeat Simple_repeat 1 31 0 903 19 0 37 chr6 122661593 122661700 -59753542 - L1PA5 LINE L1 -11 6143 6041 2078 118 20 20 chr6 122661739 122662043 -59753199 + AluSx SINE Alu 1 304 -8 192 40 0 0 chr6 122662228 122662253 -59752989 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 2005 131 23 0 chr6 122663277 122663582 -59751660 - AluSp SINE Alu 0 313 2 1919 143 9 19 chr6 122663817 122664132 -59751110 - AluSx SINE Alu 0 312 1 1191 174 5 14 chr6 122665041 122665260 -59749982 + AluJo SINE Alu 87 303 -9 21 36 0 0 chr6 122665367 122665395 -59749847 + AT_rich Low_complexity Low_complexity 1 28 0 1125 202 26 40 chr6 122666029 122666257 -59748985 - AluJo SINE Alu -87 225 1 900 157 118 88 chr6 122666554 122666788 -59748454 + Charlie4 DNA MER1_type 8 233 -1728 1801 107 7 18 chr6 122666788 122667103 -59748139 - AluSc SINE Alu 0 313 2 900 157 118 88 chr6 122667103 122667200 -59748042 + Charlie4 DNA MER1_type 233 1793 -168 1209 128 37 0 chr6 122667221 122667408 -59747834 + AluSg SINE Alu 1 194 -116 1813 114 26 11 chr6 122667508 122667781 -59747461 + AluSp SINE Alu 34 310 -3 1963 141 10 0 chr6 122668842 122669132 -59746110 - AluSx SINE Alu -19 293 1 2023 142 13 7 chr6 122669297 122669607 -59745635 - AluSx SINE Alu 0 312 1 2339 91 7 0 chr6 122670418 122670726 -59744516 - AluSx SINE Alu 0 312 3 634 275 72 19 chr6 122670951 122671158 -59744084 + MIR SINE MIR 45 262 0 236 315 221 16 chr6 122671283 122671410 -59743832 + MER5B DNA MER1_type 2 154 -24 2079 145 0 16 chr6 122671425 122671742 -59743500 + AluSx SINE Alu 1 312 0 2014 139 7 0 chr6 122671791 122672079 -59743163 + AluSx SINE Alu 1 290 -22 2046 118 28 0 chr6 122672082 122672369 -59742873 + AluSx SINE Alu 1 295 -17 42 20 0 0 chr6 122673260 122673309 -59741933 + AT_rich Low_complexity Low_complexity 1 49 0 250 109 62 0 chr6 122673311 122673380 -59741862 + L1MB4 LINE L1 6108 6181 -2 847 131 0 8 chr6 122673428 122673550 -59741692 - FLAM_A SINE Alu -12 121 1 22 35 0 0 chr6 122673565 122673594 -59741648 + AT_rich Low_complexity Low_complexity 1 29 0 469 0 0 0 chr6 122673619 122673671 -59741571 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 1615 175 21 18 chr6 122673671 122673951 -59741291 - AluJb SINE Alu -31 281 1 401 94 0 0 chr6 122673954 122674007 -59741235 + L1MB8 LINE L1 6116 6168 -10 2380 107 0 0 chr6 122674209 122674517 -59740725 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr6 122674531 122674552 -59740690 + AT_rich Low_complexity Low_complexity 1 21 0 2283 93 7 0 chr6 122675652 122675954 -59739288 + AluSp SINE Alu 2 305 -8 325 155 52 0 chr6 122676408 122676466 -59738776 - MIR SINE MIR -91 171 111 2334 116 27 14 chr6 122676664 122677034 -59738208 - L1PA11 LINE L1 -3 6171 5797 1938 137 6 43 chr6 122677063 122677385 -59737857 + AluJo SINE Alu 1 310 -2 248 109 87 0 chr6 122677393 122677439 -59737803 + L1MA8 LINE L1 6143 6192 -99 730 128 28 7 chr6 122677464 122677605 -59737637 + L1MA8 LINE L1 6143 6286 -5 24 0 0 0 chr6 122677607 122677631 -59737611 + AT_rich Low_complexity Low_complexity 1 24 0 543 312 32 16 chr6 122678049 122678142 -59737100 + MIR SINE MIR 40 130 -132 1795 132 44 52 chr6 122678142 122678263 -59736979 - MER46B DNA MER2_type -2495 236 116 369 0 0 0 chr6 122678263 122678304 -59736938 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1678 188 0 21 chr6 122678307 122678594 -59736648 - AluJo SINE Alu -31 281 1 1795 132 44 52 chr6 122678594 122678696 -59736546 - MER46B DNA MER2_type -2617 114 13 506 0 54 0 chr6 122678696 122678770 -59736472 + (TA)n Simple_repeat Simple_repeat 1 78 0 1795 132 44 52 chr6 122678770 122678795 -59736447 - MER46B DNA MER2_type -2718 13 108 2046 134 10 3 chr6 122678795 122679093 -59736149 + AluSx SINE Alu 1 300 -12 1795 132 44 52 chr6 122679093 122679202 -59736040 - MER46B DNA MER2_type -2622 109 1 543 312 32 16 chr6 122679202 122679294 -59735948 + MIR SINE MIR 130 228 -34 214 333 53 0 chr6 122679329 122679404 -59735838 - L2 LINE L2 -3 3269 3191 237 388 39 10 chr6 122679625 122679728 -59735514 - L2 LINE L2 -60 3212 3107 2008 154 0 3 chr6 122680327 122680639 -59734603 + AluJb SINE Alu 1 311 -1 1728 143 13 58 chr6 122681890 122682198 -59733044 - AluJo SINE Alu -18 294 1 360 0 0 0 chr6 122682350 122682390 -59732852 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2263 93 0 0 chr6 122682394 122682674 -59732568 - AluSg SINE Alu -30 280 1 201 287 208 30 chr6 122682961 122683062 -59732180 + MIR SINE MIR 35 153 -109 1926 122 66 3 chr6 122683511 122683799 -59731443 - AluSx SINE Alu 0 312 7 319 292 15 36 chr6 122683978 122684115 -59731127 + MIR SINE MIR 5 138 -124 236 155 0 17 chr6 122684330 122684388 -59730854 + (CA)n Simple_repeat Simple_repeat 2 58 0 698 181 31 79 chr6 122684707 122684961 -59730281 + MER33 DNA MER1_type 14 255 -69 187 246 15 46 chr6 122685112 122685177 -59730065 + L2 LINE L2 3140 3202 -111 1183 254 210 15 chr6 122685474 122686234 -59729008 + L2 LINE L2 2386 3301 -12 487 119 0 0 chr6 122686234 122686301 -59728941 + AluS SINE Alu 1 67 -246 186 189 0 0 chr6 122686302 122686339 -59728903 + (CATA)n Simple_repeat Simple_repeat 4 40 0 314 146 0 0 chr6 122686470 122686525 -59728717 + FLAM_A SINE Alu 70 124 -9 2264 116 0 10 chr6 122686534 122686845 -59728397 + AluSx SINE Alu 1 308 -4 940 154 0 0 chr6 122686964 122687107 -59728135 - FLAM_C SINE Alu 0 143 1 220 263 50 38 chr6 122687243 122687323 -59727919 + L2 LINE L2 3187 3267 -5 1011 168 0 56 chr6 122687341 122687520 -59727722 + AluJb SINE Alu 139 307 -5 1499 41 0 0 chr6 122687526 122687695 -59727547 - AluY SINE Alu -141 170 2 21 0 0 0 chr6 122688081 122688102 -59727140 + AT_rich Low_complexity Low_complexity 1 21 0 1262 117 0 0 chr6 122690143 122690314 -59724928 - AluSg/x SINE Alu -10 302 132 1815 125 23 10 chr6 122690355 122690659 -59724583 - AluY SINE Alu -3 308 1 213 313 12 24 chr6 122690864 122690947 -59724295 - MIR SINE MIR -62 146 65 269 135 19 0 chr6 122691217 122691269 -59723973 + (TA)n Simple_repeat Simple_repeat 1 53 0 2390 127 2 20 chr6 122691283 122691686 -59723556 - MER65A LTR ERV1 -49 396 1 2270 85 0 0 chr6 122692151 122692432 -59722810 - AluSg SINE Alu -29 281 1 256 317 145 14 chr6 122692454 122692599 -59722643 - MIR SINE MIR -93 169 6 697 234 0 0 chr6 122692700 122692824 -59722418 + FLAM_A SINE Alu 1 124 -9 1203 152 5 23 chr6 122692837 122693054 -59722188 + L1PA16 LINE L1 5945 6157 -9 493 120 13 0 chr6 122693091 122693166 -59722076 - AluS SINE Alu -236 76 1 2232 129 3 0 chr6 122693174 122693525 -59721717 - AluSg SINE Alu 0 352 1 367 334 112 65 chr6 122693639 122693995 -59721247 - L2 LINE L2 -4 3268 2896 221 213 0 33 chr6 122694234 122694295 -59720947 + GA-rich Low_complexity Low_complexity 1 59 0 282 294 19 119 chr6 122694501 122694770 -59720472 - L2 LINE L2 -98 3174 2933 2145 48 52 0 chr6 122694966 122695234 -59720008 + AluY SINE Alu 2 283 -28 181 212 0 0 chr6 122695731 122695764 -59719478 + L2 LINE L2 3262 3294 -19 1094 360 123 27 chr6 122696107 122697531 -59717711 + L2 LINE L2 928 2496 -818 342 67 0 0 chr6 122697531 122697576 -59717666 + (CA)n Simple_repeat Simple_repeat 1 45 0 1094 360 123 27 chr6 122697576 122697606 -59717636 + L2 LINE L2 2496 2522 -792 861 199 29 6 chr6 122698296 122698467 -59716775 + MLT1C LTR MaLR 293 467 0 237 65 0 0 chr6 122698622 122698653 -59716589 + (TATG)n Simple_repeat Simple_repeat 1 31 0 734 125 58 8 chr6 122698697 122698817 -59716425 - FLAM_C SINE Alu -17 126 1 786 194 25 92 chr6 122698850 122699133 -59716109 - MER97b DNA MER1_type? -789 264 1 2217 103 3 13 chr6 122700452 122700764 -59714478 - AluSx SINE Alu -3 309 1 245 264 0 0 chr6 122701177 122701230 -59714012 + MER5A DNA MER1_type 17 69 -120 240 163 0 0 chr6 122701703 122701746 -59713496 + CT-rich Low_complexity Low_complexity 2 44 0 200 214 126 48 chr6 122701750 122701853 -59713389 + MIR SINE MIR 150 260 -2 439 285 48 54 chr6 122701983 122702169 -59713073 - MIR3 SINE MIR -10 198 14 2244 86 7 13 chr6 122702215 122702519 -59712723 + AluY SINE Alu 1 302 -9 2240 80 0 3 chr6 122702519 122702831 -59712411 + AluY SINE Alu 1 311 0 1496 217 87 65 chr6 122704078 122704393 -59710849 + MER97a DNA MER1_type? 1 308 -586 1477 175 45 45 chr6 122704393 122704702 -59710540 + AluJo SINE Alu 1 309 -3 1496 217 87 65 chr6 122704702 122704878 -59710364 + MER97a DNA MER1_type? 308 510 -384 2170 89 43 17 chr6 122704878 122705180 -59710062 + AluSq SINE Alu 1 310 -3 1496 217 87 65 chr6 122705180 122705299 -59709943 + MER97a DNA MER1_type? 510 625 -269 218 118 7 104 chr6 122705347 122705482 -59709760 + (TTA)n Simple_repeat Simple_repeat 3 124 0 184 288 76 0 chr6 122705753 122705819 -59709423 - L2 LINE L2 -23 3249 3179 21 0 0 0 chr6 122706350 122706371 -59708871 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr6 122706384 122706413 -59708829 + (CA)n Simple_repeat Simple_repeat 2 30 0 181 287 217 0 chr6 122707784 122707899 -59707343 + MIR SINE MIR 123 262 0 327 244 11 0 chr6 122708577 122708667 -59706575 + L1MB3 LINE L1 5593 5683 -488 765 208 12 54 chr6 122708672 122708840 -59706402 - MER8 DNA MER2_type -69 170 10 1948 102 95 0 chr6 122708851 122709134 -59706108 - AluSp SINE Alu -3 310 1 2825 136 37 6 chr6 122709144 122709629 -59705613 + L1MB3 LINE L1 5682 6181 -2 2081 125 42 33 chr6 122709895 122710256 -59704986 - THE1B LTR MaLR 0 364 1 231 304 77 60 chr6 122710614 122710782 -59704460 - MIR SINE MIR -61 201 31 2323 94 0 3 chr6 122711970 122712279 -59702963 - AluY SINE Alu -1 310 3 5908 145 16 37 chr6 122712283 122713198 -59702044 - L1MA4A LINE L1 -4 6299 5366 2308 109 3 3 chr6 122713198 122713511 -59701731 - AluSp SINE Alu 0 313 1 5908 145 16 37 chr6 122713511 122714421 -59700821 - L1MA4A LINE L1 -937 5366 4438 558 54 0 0 chr6 122714421 122714495 -59700747 + (TTCTC)n Simple_repeat Simple_repeat 4 77 0 1902 135 11 14 chr6 122714500 122714646 -59700596 - AluSx SINE Alu -31 281 135 2349 86 7 0 chr6 122714646 122714949 -59700293 - AluY SINE Alu -6 305 1 1902 135 11 14 chr6 122714949 122715084 -59700158 - AluSx SINE Alu -177 135 1 5908 145 16 37 chr6 122715084 122715272 -59699970 - L1MA4A LINE L1 -1869 4434 4327 2344 108 0 10 chr6 122715272 122715586 -59699656 - AluSx SINE Alu -1 311 1 5908 145 16 37 chr6 122715586 122715785 -59699457 - L1MA4A LINE L1 -1976 4327 4125 355 199 81 112 chr6 122715781 122715874 -59699368 - L1 LINE L1 -1887 4259 4165 * 2215 90 0 40 chr6 122715874 122716197 -59699045 - AluY SINE Alu -1 310 1 186 43 0 0 chr6 122716200 122716223 -59699019 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 355 199 81 112 chr6 122716223 122716286 -59698956 - L1 LINE L1 -1983 4163 4104 443 300 133 6 chr6 122716446 122716626 -59698616 - MIR SINE MIR -12 250 48 2079 128 3 0 chr6 122717331 122717621 -59697621 - AluSx SINE Alu -21 291 1 580 195 0 65 chr6 122717910 122717967 -59697275 + MER5B DNA MER1_type 2 49 -129 1566 143 3 94 chr6 122717967 122718309 -59696933 + AluJb SINE Alu 3 316 0 580 195 0 65 chr6 122718309 122718373 -59696869 + MER5B DNA MER1_type 49 116 -62 447 167 7 200 chr6 122718808 122718867 -59696375 - MER5A DNA MER1_type -3 186 172 652 222 0 15 chr6 122718867 122719002 -59696240 + FLAM_C SINE Alu 1 133 0 447 167 7 200 chr6 122719002 122719092 -59696150 - MER5A DNA MER1_type -17 172 66 751 95 0 0 chr6 122719092 122719197 -59696045 - AluSp/q SINE Alu -9 304 200 532 198 16 16 chr6 122719398 122719580 -59695662 - AluY SINE Alu -129 182 1 32 26 0 0 chr6 122719711 122719750 -59695492 + AT_rich Low_complexity Low_complexity 1 39 0 1423 194 9 72 chr6 122719750 122720070 -59695172 - AluJo SINE Alu -12 300 1 735 276 41 24 chr6 122720567 122720813 -59694429 - MIR SINE MIR 0 262 13 462 217 0 0 chr6 122720990 122721110 -59694132 + (TA)n Simple_repeat Simple_repeat 2 121 0 279 0 0 0 chr6 122721110 122721141 -59694101 + (GA)n Simple_repeat Simple_repeat 2 32 0 1228 136 0 0 chr6 122721155 122721324 -59693918 + AluSp SINE Alu 132 300 -13 1271 137 13 4 chr6 122721351 122721577 -59693665 + L1MB7 LINE L1 5948 6175 -9 207 200 0 0 chr6 122721885 122721920 -59693322 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 418 311 36 46 chr6 122721920 122722139 -59693103 - L1ME LINE L1 -384 5737 5521 955 132 0 0 chr6 122722503 122722647 -59692595 - AluSg/x SINE Alu 0 312 169 1682 189 64 3 chr6 122722696 122723040 -59692202 + MLT1A1 LTR MaLR 1 365 0 733 290 53 46 chr6 122723211 122723666 -59691576 + MLT1J LTR MaLR 40 497 -14 201 266 106 21 chr6 122723672 122723766 -59691476 - L2 LINE L2 -236 3036 2935 1442 207 125 11 chr6 122723914 122724291 -59690951 - MLT1F LTR MaLR 0 542 123 1864 155 3 17 chr6 122724474 122724770 -59690472 + AluJo SINE Alu 1 292 -20 1933 136 3 46 chr6 122726689 122727013 -59688229 + AluSx SINE Alu 1 310 -2 506 276 52 43 chr6 122727937 122728147 -59687095 + MIR SINE MIR 47 258 -4 646 174 81 50 chr6 122728317 122728478 -59686764 - FRAM SINE Alu 0 166 1 2377 96 0 3 chr6 122728494 122728807 -59686435 - AluSx SINE Alu 0 312 1 1895 143 11 0 chr6 122729093 122729409 -59685833 + AluSx SINE Alu 7 325 0 362 293 136 30 chr6 122729427 122729625 -59685617 + MIR SINE MIR 31 249 -13 321 305 109 16 chr6 122729724 122729852 -59685390 + MIR SINE MIR 86 225 -37 269 283 94 19 chr6 122730878 122730925 -59684317 + MIR SINE MIR 128 170 -92 2281 130 0 9 chr6 122730925 122731240 -59684002 + AluSx SINE Alu 1 312 0 269 283 94 19 chr6 122731240 122731298 -59683944 + MIR SINE MIR 170 241 -21 2206 103 0 13 chr6 122731488 122731788 -59683454 + AluSq SINE Alu 1 296 -17 208 315 48 34 chr6 122731921 122732067 -59683175 + MIR SINE MIR 65 212 -50 543 226 16 32 chr6 122732248 122732372 -59682870 + FLAM_A SINE Alu 5 126 -7 261 259 85 116 chr6 122732506 122732730 -59682512 + MIR SINE MIR 45 261 -1 533 260 0 0 chr6 122734343 122734466 -59680776 - U3 snRNA snRNA -94 123 1 1499 199 0 56 chr6 122734553 122734855 -59680387 - AluJb SINE Alu -27 285 1 223 417 0 0 chr6 122735825 122735897 -59679345 + C-rich Low_complexity Low_complexity 1 72 0 318 187 0 3 chr6 122735942 122736003 -59679239 + FLAM SINE Alu 70 119 -14 34 24 0 0 chr6 122736015 122736056 -59679186 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr6 122736056 122736076 -59679166 + (T)n Simple_repeat Simple_repeat 1 20 0 1715 192 3 7 chr6 122736079 122736371 -59678871 + AluJo SINE Alu 1 291 -21 33 25 0 0 chr6 122736371 122736411 -59678831 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr6 122737782 122737807 -59677435 + AT_rich Low_complexity Low_complexity 1 25 0 342 0 0 0 chr6 122737904 122737942 -59677300 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2087 106 0 7 chr6 122737946 122738229 -59677013 - AluSx SINE Alu -31 281 1 1706 129 8 4 chr6 122738382 122738646 -59676596 - AluSx SINE Alu 0 306 42 2273 104 0 0 chr6 122738846 122739144 -59676098 + AluSx SINE Alu 1 298 -14 1169 159 60 36 chr6 122739707 122740009 -59675233 - L1MA9 LINE L1 -8 6304 5996 1126 148 22 0 chr6 122740054 122740237 -59675005 + AluSx SINE Alu 1 187 -125 2381 87 3 3 chr6 122740671 122740980 -59674262 - AluSg SINE Alu -1 309 1 2226 97 7 3 chr6 122740980 122741278 -59673964 - AluSx SINE Alu -13 299 1 474 324 141 9 chr6 122741335 122741548 -59673694 - L2 LINE L2 -3 3269 3029 236 248 324 0 chr6 122741640 122741745 -59673497 - MIR SINE MIR 0 262 124 909 257 47 15 chr6 122741814 122742196 -59673046 + MLT1H1 LTR MaLR 100 578 -12 333 348 135 22 chr6 122742363 122742593 -59672649 - L2 LINE L2 -458 2856 2601 210 143 0 0 chr6 122742848 122742883 -59672359 + (TTCCC)n Simple_repeat Simple_repeat 4 38 0 479 250 112 31 chr6 122742938 122743162 -59672080 + L1MC4 LINE L1 6462 6703 -1339 300 282 47 0 chr6 122743170 122743255 -59671987 - L1MC4 LINE L1 -1339 6703 6615 2049 261 75 74 chr6 122743268 122743725 -59671517 + L1MC4 LINE L1 6614 7069 -973 490 183 8 16 chr6 122743725 122743851 -59671391 + L1MA4 LINE L1 6174 6298 -2 1695 212 0 0 chr6 122743857 122744164 -59671078 + AluJb SINE Alu 1 307 -5 2049 261 75 74 chr6 122744164 122744576 -59670666 + L1MC4 LINE L1 7073 7483 -559 2142 109 7 3 chr6 122744576 122744869 -59670373 + AluSx SINE Alu 1 294 -18 2049 261 75 74 chr6 122744869 122744898 -59670344 + L1MC4 LINE L1 7483 7510 -532 1872 151 6 50 chr6 122744898 122745217 -59670025 + AluSx SINE Alu 1 305 -7 2049 261 75 74 chr6 122745217 122745270 -59669972 + L1MC4 LINE L1 7510 7561 -481 324 0 0 0 chr6 122745270 122745306 -59669936 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1653 156 0 52 chr6 122745313 122745602 -59669640 - AluSx SINE Alu -38 274 1 2049 261 75 74 chr6 122745602 122745867 -59669375 + L1MC4 LINE L1 7566 7849 -193 183 114 0 0 chr6 122746149 122746184 -59669058 + (T)n Simple_repeat Simple_repeat 1 35 0 642 233 23 0 chr6 122746188 122746317 -59668925 - FLAM_A SINE Alu -1 132 1 2021 116 10 10 chr6 122746564 122746858 -59668384 + AluSq SINE Alu 1 294 -19 1510 166 67 28 chr6 122746890 122747174 -59668068 + AluJo SINE Alu 12 306 -6 27 0 0 0 chr6 122748055 122748082 -59667160 + AT_rich Low_complexity Low_complexity 1 27 0 2166 109 3 0 chr6 122748089 122748404 -59666838 + AluSx SINE Alu 3 318 0 697 190 0 0 chr6 122748404 122748520 -59666722 - AluJo/FLAM SINE Alu -184 118 3 331 309 58 61 chr6 122748713 122749007 -59666235 + MLT1I LTR MaLR 68 360 -49 339 289 0 58 chr6 122749053 122749157 -59666085 - MIR SINE MIR -91 117 20 1861 122 3 70 chr6 122750077 122750213 -59665029 + AluSx SINE Alu 1 145 -167 2704 13 0 10 chr6 122750213 122750521 -59664721 + AluYb8 SINE Alu 1 305 -13 1861 122 3 70 chr6 122750521 122750711 -59664531 + AluSx SINE Alu 145 305 -7 591 223 131 0 chr6 122751017 122751147 -59664095 + FRAM SINE Alu 1 146 -30 340 211 33 33 chr6 122751175 122751355 -59663887 + (TA)n Simple_repeat Simple_repeat 1 180 0 423 116 16 54 chr6 122751374 122751503 -59663739 + (TA)n Simple_repeat Simple_repeat 2 125 0 30 0 0 0 chr6 122752359 122752389 -59662853 + AT_rich Low_complexity Low_complexity 1 30 0 1057 65 18 18 chr6 122752481 122752651 -59662591 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 615 108 0 0 chr6 122752651 122752744 -59662498 + (TTCC)n Simple_repeat Simple_repeat 2 94 0 2118 129 10 0 chr6 122752763 122753072 -59662170 - AluSx SINE Alu 0 312 1 2523 82 0 0 chr6 122753614 122753919 -59661323 + AluSg SINE Alu 1 305 -5 369 0 0 0 chr6 122755245 122755286 -59659956 + (TG)n Simple_repeat Simple_repeat 2 42 0 1668 172 13 30 chr6 122755330 122755632 -59659610 - AluJo SINE Alu -15 297 1 1200 163 120 0 chr6 122757358 122757616 -59657626 - Tigger3(Golem) DNA MER2_type -1 3028 2740 873 153 0 0 chr6 122757616 122757753 -59657489 + FLAM_C SINE Alu 1 137 -6 1032 159 121 19 chr6 122757756 122758013 -59657229 - Tigger3(Golem) DNA MER2_type -265 2764 2482 1063 138 11 58 chr6 122758152 122758341 -59656901 + AluSq SINE Alu 126 305 -8 230 49 0 49 chr6 122758353 122758394 -59656848 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2436 99 0 3 chr6 122758446 122758758 -59656484 + AluY SINE Alu 1 311 0 229 246 0 0 chr6 122759424 122759481 -59655761 + C-rich Low_complexity Low_complexity 1 57 0 1451 118 0 24 chr6 122759581 122759812 -59655430 + AluSq SINE Alu 90 313 0 1594 203 3 7 chr6 122760196 122760491 -59654751 - AluJo SINE Alu -18 294 1 237 65 0 0 chr6 122760530 122760561 -59654681 + (CATA)n Simple_repeat Simple_repeat 1 31 0 1656 168 160 43 chr6 122760716 122761055 -59654187 - MLT1C LTR MaLR 0 467 68 2387 99 3 0 chr6 122761055 122761357 -59653885 - AluSp SINE Alu -10 303 1 1656 168 160 43 chr6 122761357 122761435 -59653807 - MLT1C LTR MaLR -399 68 1 1817 177 18 0 chr6 122761437 122761765 -59653477 - MLT1A1 LTR MaLR 0 365 32 246 139 23 0 chr6 122761789 122761832 -59653410 - MLT1A1 LTR MaLR -318 56 13 284 261 91 0 chr6 122762448 122762536 -59652706 - MIR3 SINE MIR -3 205 110 22 35 0 0 chr6 122762924 122762953 -59652289 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr6 122763032 122763058 -59652184 + AT_rich Low_complexity Low_complexity 1 26 0 2124 115 0 16 chr6 122763585 122763889 -59651353 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr6 122763939 122763970 -59651272 + AT_rich Low_complexity Low_complexity 1 31 0 1785 150 3 66 chr6 122765661 122765994 -59649248 - AluJb SINE Alu 0 312 1 1174 267 159 35 chr6 122766786 122767516 -59647726 + L2 LINE L2 2446 3261 -52 2488 92 21 32 chr6 122767516 122767895 -59647347 - THE1C LTR MaLR 0 375 1 1174 267 159 35 chr6 122767895 122767915 -59647327 + L2 LINE L2 3261 3277 -36 580 240 14 14 chr6 122767922 122768068 -59647174 + MLT2F LTR ERVL 1 146 -517 * 637 204 24 82 chr6 122768067 122768273 -59646969 + MLT1E3 LTR MaLR 46 239 -385 278 167 83 111 chr6 122768578 122768613 -59646629 + L1ME4a LINE L1 5956 5990 -131 1648 232 17 90 chr6 122768613 122769056 -59646186 - MLT1F LTR MaLR -2 540 66 1486 172 81 0 chr6 122769056 122769329 -59645913 - AluJb SINE Alu -17 295 1 1648 232 17 90 chr6 122769329 122769340 -59645902 - MLT1F LTR MaLR -476 66 56 1871 171 0 16 chr6 122769340 122769656 -59645586 - AluJo SINE Alu -1 311 1 1648 232 17 90 chr6 122769656 122769778 -59645464 - MLT1F LTR MaLR -486 56 5 278 167 83 111 chr6 122769778 122769886 -59645356 + L1ME4a LINE L1 5990 6095 -26 2035 155 0 13 chr6 122769906 122770276 -59644966 - AluJb SINE Alu 0 366 1 1454 192 44 19 chr6 122770931 122771291 -59643951 + MLT1B LTR MaLR 22 390 0 388 189 156 71 chr6 122771382 122771594 -59643648 - L1ME4a LINE L1 -39 6082 5853 301 225 28 28 chr6 122771627 122771712 -59643530 + (TAGA)n Simple_repeat Simple_repeat 3 90 -54 1426 175 74 60 chr6 122771712 122772078 -59643164 + MLT1A2 LTR MaLR 2 372 -2 301 225 28 28 chr6 122772078 122772134 -59643108 + (TAGA)n Simple_repeat Simple_repeat 89 144 0 * 350 283 11 38 chr6 122772095 122772279 -59642963 + (TA)n Simple_repeat Simple_repeat 2 180 0 246 272 35 18 chr6 122772226 122772340 -59642902 + (CATATA)n Simple_repeat Simple_repeat 3 118 0 * 232 289 88 61 chr6 122772432 122772546 -59642696 + MIR SINE MIR 23 139 -69 1113 203 52 11 chr6 122773236 122773507 -59641735 - MER63 DNA MER1_type -7 1054 773 950 289 108 21 chr6 122773811 122774440 -59640802 + L1MC4 LINE L1 7086 7769 -273 502 150 75 61 chr6 122774515 122774662 -59640580 + L1MC4 LINE L1 7894 8042 0 2146 139 3 0 chr6 122774669 122774978 -59640264 + AluSq SINE Alu 3 312 -1 696 81 37 22 chr6 122775016 122775152 -59640090 + GA-rich Low_complexity Low_complexity 2 139 0 376 243 19 0 chr6 122775486 122775589 -59639653 - L1ME2 LINE L1 -20 6144 6040 1052 244 36 14 chr6 122775595 122775956 -59639286 - L1M4 LINE L1 -868 5278 4910 226 0 0 0 chr6 122775999 122776024 -59639218 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 1633 141 10 64 chr6 122776024 122776322 -59638920 - AluJb SINE Alu -1 306 1 791 152 6 70 chr6 122776374 122776545 -59638697 + MER8 DNA MER2_type 1 160 -79 421 90 0 0 chr6 122776555 122776622 -59638620 - MER41B LTR ERV1 -88 547 481 * 534 181 0 0 chr6 122776621 122776715 -59638527 + MER8 DNA MER2_type 146 239 0 311 254 57 16 chr6 122776723 122776845 -59638397 + L1ME4a LINE L1 5991 6117 -4 2048 135 3 0 chr6 122778969 122779280 -59635962 - AluSq SINE Alu 0 312 1 1143 235 169 18 chr6 122779382 122779821 -59635421 + MLT1D LTR MaLR 1 505 0 180 0 0 0 chr6 122779834 122779854 -59635388 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 237 341 124 46 chr6 122779888 122780211 -59635031 - L2 LINE L2 0 3272 2925 266 360 7 40 chr6 122780305 122780455 -59634787 - L2 LINE L2 -484 2830 2686 242 286 118 59 chr6 122780498 122780802 -59634440 - L2 LINE L2 -1125 2189 1868 571 196 171 0 chr6 122780874 122781032 -59634210 + MER5A DNA MER1_type 1 185 -4 465 234 284 0 chr6 122781061 122781202 -59634040 + MER5A DNA MER1_type 9 189 0 230 143 0 0 chr6 122781646 122781695 -59633547 + L1ME3 LINE L1 6114 6162 0 607 250 83 18 chr6 122781737 122781905 -59633337 + MER5A DNA MER1_type 1 179 -10 26 0 0 0 chr6 122782507 122782533 -59632709 + AT_rich Low_complexity Low_complexity 1 26 0 575 65 13 0 chr6 122782659 122782736 -59632506 - MADE1 DNA Mariner -2 78 1 1863 167 3 0 chr6 122782754 122783047 -59632195 - AluSx SINE Alu -18 294 1 777 295 0 15 chr6 122783047 122783247 -59631995 - MIR SINE MIR -64 198 2 366 291 29 86 chr6 122783396 122783571 -59631671 + MIR3 SINE MIR 33 197 -11 1899 192 50 46 chr6 122783820 122784320 -59630922 - MLT1D LTR MaLR -1 504 3 1786 148 20 10 chr6 122784504 122784808 -59630434 - AluSx SINE Alu -5 307 1 2213 96 3 0 chr6 122784812 122785125 -59630117 - AluSp SINE Alu 0 314 1 371 222 0 56 chr6 122785145 122785235 -59630007 - MIR3 SINE MIR -15 193 109 235 292 0 0 chr6 122786037 122786126 -59629116 + L1M4 LINE L1 3860 3948 -2198 1123 148 0 0 chr6 122786260 122786436 -59628806 - AluSg/x SINE Alu -3 309 134 615 236 89 94 chr6 122786438 122786737 -59628505 + HAL1 LINE L1 779 1075 -1432 2135 118 0 28 chr6 122786737 122787058 -59628184 + AluSx SINE Alu 1 312 0 615 236 89 94 chr6 122787058 122787322 -59627920 + HAL1 LINE L1 1075 1339 -1168 239 211 180 39 chr6 122787356 122787484 -59627758 + HAL1 LINE L1 1445 1590 -917 624 124 0 38 chr6 122787487 122787592 -59627650 - AluJo/FRAM SINE Alu -10 302 202 2770 19 0 0 chr6 122787593 122787902 -59627340 + AluYa5 SINE Alu 2 310 -1 237 246 0 0 chr6 122787911 122787976 -59627266 + L1M1 LINE L1 5378 5442 -860 2116 112 3 0 chr6 122788010 122788297 -59626945 + AluSx SINE Alu 1 288 -24 1309 291 79 19 chr6 122788353 122789022 -59626220 + L1ME3 LINE L1 5454 6162 0 2033 137 0 0 chr6 122789106 122789431 -59625811 - AluSx SINE Alu 0 325 1 1038 265 59 51 chr6 122789454 122790107 -59625135 + L1ME3A LINE L1 5283 5949 -221 1025 169 0 26 chr6 122790229 122790418 -59624824 + AluJb SINE Alu 129 312 0 21 82 0 0 chr6 122791567 122791616 -59623626 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr6 122792241 122792266 -59622976 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr6 122792805 122792845 -59622397 + AT_rich Low_complexity Low_complexity 1 40 0 249 276 69 0 chr6 122792896 122792983 -59622259 - L2 LINE L2 0 3313 3221 237 308 0 0 chr6 122793190 122793255 -59621987 - MIR SINE MIR -2 260 196 606 170 0 0 chr6 122793260 122793366 -59621876 - MER47A DNA MER2_type -6 360 255 2646 163 4 19 chr6 122793468 122793953 -59621289 + MER52A LTR ERV1 1278 1755 0 461 339 27 5 chr6 122793953 122794139 -59621103 - MIR SINE MIR -59 203 14 868 165 6 18 chr6 122794676 122794840 -59620402 - MER47A DNA MER2_type -201 165 4 682 233 5 93 chr6 122794842 122795057 -59620185 - MIR SINE MIR -63 199 4 1525 111 13 34 chr6 122795384 122795619 -59619623 + MER30 DNA MER1_type 1 230 0 1942 137 7 3 chr6 122795906 122796199 -59619043 + AluSx SINE Alu 1 294 -18 846 145 0 41 chr6 122796308 122796453 -59618789 + FLAM_C SINE Alu 1 139 -4 2283 110 0 7 chr6 122796668 122796976 -59618266 + AluSc SINE Alu 1 306 -3 2056 121 7 0 chr6 122798591 122798880 -59616362 - AluSx SINE Alu -21 291 1 293 260 55 0 chr6 122798882 122798955 -59616287 - MIR3 SINE MIR -29 179 103 21 0 0 0 chr6 122799780 122799801 -59615441 + AT_rich Low_complexity Low_complexity 1 21 0 1835 168 3 10 chr6 122800168 122800465 -59614777 - AluJo SINE Alu -5 307 13 231 349 91 56 chr6 122800480 122800965 -59614277 + L2 LINE L2 2238 2739 -575 2131 141 27 14 chr6 122801159 122801529 -59613713 - THE1C LTR MaLR 0 375 1 196 287 57 49 chr6 122802480 122802602 -59612640 - MIR SINE MIR -72 190 68 27 0 0 0 chr6 122803515 122803542 -59611700 + AT_rich Low_complexity Low_complexity 1 27 0 234 232 0 18 chr6 122804073 122804129 -59611113 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr6 122804523 122804544 -59610698 + AT_rich Low_complexity Low_complexity 1 21 0 236 319 78 48 chr6 122804547 122804713 -59610529 + MIR3 SINE MIR 6 176 -32 842 101 48 125 chr6 122804718 122804886 -59610356 + BC200 scRNA scRNA 2 156 -44 190 282 87 29 chr6 122804899 122805002 -59610240 - MIR SINE MIR 0 262 154 1174 118 8 118 chr6 122805002 122805264 -59609978 + LTR12 LTR ERV1 2 234 -480 327 121 0 0 chr6 122805325 122805383 -59609859 + LTR12 LTR ERV1 232 289 -425 260 230 35 23 chr6 122805383 122805470 -59609772 + LTR30 LTR ERV1 556 643 -79 664 101 10 0 chr6 122805472 122805571 -59609671 + LTR12 LTR ERV1 615 714 0 393 327 56 10 chr6 122805572 122805716 -59609526 - MIR SINE MIR -65 143 8 2251 104 0 0 chr6 122806383 122806672 -59608570 + AluSx SINE Alu 10 298 -14 306 233 54 16 chr6 122806675 122806804 -59608438 + L1ME4a LINE L1 5986 6119 -2 466 188 10 10 chr6 122807509 122807605 -59607637 + MER58 DNA MER1_type 149 244 -97 997 159 116 9 chr6 122807660 122807893 -59607349 + MLT1C LTR MaLR 53 310 -157 1181 185 5 22 chr6 122807893 122808115 -59607127 + AluJo SINE Alu 83 300 -12 438 178 11 11 chr6 122808139 122808229 -59607013 + MLT1C LTR MaLR 378 467 0 1533 182 3 34 chr6 122808470 122808608 -59606634 + AluJb SINE Alu 1 142 -169 297 75 0 0 chr6 122808608 122808648 -59606594 + (CA)n Simple_repeat Simple_repeat 1 40 0 1533 182 3 34 chr6 122808648 122808829 -59606413 + AluJb SINE Alu 142 311 0 28 48 0 0 chr6 122809305 122809347 -59605895 + AT_rich Low_complexity Low_complexity 1 42 0 1955 143 0 20 chr6 122809369 122809670 -59605572 - AluSx SINE Alu -17 295 1 27 0 0 0 chr6 122810466 122810493 -59604749 + AT_rich Low_complexity Low_complexity 1 27 0 1962 156 0 0 chr6 122811962 122812287 -59602955 + AluSx SINE Alu 1 312 0 306 267 67 13 chr6 122812345 122812420 -59602822 + MIR SINE MIR 38 116 -92 321 277 59 15 chr6 122813130 122813332 -59601910 + L1ME4a LINE L1 4626 4836 -1310 2044 130 0 3 chr6 122813454 122813768 -59601474 - AluSx SINE Alu 0 313 1 1702 137 58 4 chr6 122813844 122814121 -59601121 - AluSx SINE Alu -20 292 1 364 266 92 60 chr6 122814166 122814185 -59601057 + L1ME4a LINE L1 5043 5060 -1086 463 103 184 11 chr6 122814185 122814272 -59600970 + U13 snRNA snRNA 2 103 -1 364 266 92 60 chr6 122814272 122814534 -59600708 + L1ME4a LINE L1 5060 5333 -813 543 286 88 39 chr6 122814632 122815020 -59600222 + L1ME4a LINE L1 5482 5888 -233 391 286 93 43 chr6 122816098 122816259 -59598983 - MIR SINE MIR -77 185 17 1868 150 39 0 chr6 122816581 122816888 -59598354 - AluSx SINE Alu 0 312 1 1849 114 24 57 chr6 122817576 122817873 -59597369 + AluSx SINE Alu 9 295 -17 265 336 0 29 chr6 122817980 122818084 -59597158 - MIR SINE MIR -113 149 49 236 248 120 68 chr6 122818266 122818383 -59596859 - MARNA DNA Mariner -305 281 159 201 74 0 0 chr6 122818532 122818559 -59596683 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr6 122818943 122818964 -59596278 + AT_rich Low_complexity Low_complexity 1 21 0 2354 83 3 22 chr6 122819505 122819818 -59595424 - AluY SINE Alu -4 307 1 324 298 158 11 chr6 122820135 122820326 -59594916 + MIR SINE MIR 36 254 -8 33 0 0 0 chr6 122820486 122820519 -59594723 + AT_rich Low_complexity Low_complexity 1 33 0 226 322 33 11 chr6 122820857 122820947 -59594295 - MIR SINE MIR -169 93 2 288 0 0 0 chr6 122821680 122821712 -59593530 + (CA)n Simple_repeat Simple_repeat 2 33 0 1031 114 0 0 chr6 122822335 122822475 -59592767 + AluJo SINE Alu 1 140 -172 581 134 27 45 chr6 122822477 122822589 -59592653 + AluSp/q SINE Alu 187 296 -17 336 312 116 23 chr6 122822595 122822747 -59592495 + L1MC4a LINE L1 5666 5845 -1963 1627 155 61 27 chr6 122822747 122823044 -59592198 + AluJo SINE Alu 1 307 -5 336 312 116 23 chr6 122823044 122823106 -59592136 + L1MC4a LINE L1 5845 5900 -1908 12547 126 28 31 chr6 122823151 122823763 -59591479 + Tigger1 DNA MER2_type 26 638 -1780 1905 125 9 84 chr6 122823763 122824098 -59591144 + AluSx SINE Alu 1 310 -2 12547 126 28 31 chr6 122824098 122825693 -59589549 + Tigger1 DNA MER2_type 638 2226 -192 211 317 40 70 chr6 122826052 122826251 -59588991 + L2 LINE L2 2909 3101 -171 376 275 55 45 chr6 122826307 122826363 -59588879 - LTR16C LTR ERVL -2 489 435 1051 205 193 26 chr6 122826363 122826788 -59588454 + LTR54B LTR ERV1 1 496 -2 376 275 55 45 chr6 122826788 122826931 -59588311 - LTR16C LTR ERVL -56 435 288 281 297 72 0 chr6 122828251 122828362 -59586880 + MIR SINE MIR 47 165 -97 314 80 20 0 chr6 122829266 122829316 -59585926 + (GA)n Simple_repeat Simple_repeat 2 52 0 192 77 0 0 chr6 122829431 122829457 -59585785 + (T)n Simple_repeat Simple_repeat 1 26 0 2593 58 0 0 chr6 122829457 122829783 -59585459 - LTR17 LTR ERV1 -454 326 1 1927 45 20 0 chr6 122829783 122830030 -59585212 - HERV17 LTR ERV1 0 8626 8375 840 138 14 28 chr6 122830076 122830221 -59585021 - FLAM_C SINE Alu 0 143 1 324 319 104 7 chr6 122830524 122830668 -59584574 - MIR3 SINE MIR -13 195 38 21 104 0 0 chr6 122830722 122830799 -59584443 + AT_rich Low_complexity Low_complexity 1 77 0 375 214 20 10 chr6 122831000 122831098 -59584144 + MLT2F LTR ERVL 48 146 -517 647 226 0 70 chr6 122831106 122831305 -59583937 + MLT1E3 LTR MaLR 55 239 -385 358 234 85 110 chr6 122831116 122831479 -59583763 + MLT2C1 LTR ERVL 44 397 0 * 1656 193 7 3 chr6 122832589 122832921 -59582321 - AluJb SINE Alu 0 312 1 757 250 85 35 chr6 122834925 122835241 -59580001 - L1MC5 LINE L1 -1002 6959 6628 378 0 0 0 chr6 122835272 122835314 -59579928 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 228 35 0 0 chr6 122835552 122835581 -59579661 + (TG)n Simple_repeat Simple_repeat 2 30 0 587 275 92 8 chr6 122835760 122836000 -59579242 - L1MC5 LINE L1 -1937 5871 5612 189 0 0 0 chr6 122837904 122837925 -59577317 + (TC)n Simple_repeat Simple_repeat 2 22 0 651 207 0 0 chr6 122837926 122838042 -59577200 - FLAM_A SINE Alu -17 116 1 1466 167 0 56 chr6 122839423 122839710 -59575532 + AluJo SINE Alu 35 305 -7 330 197 20 39 chr6 122839710 122839816 -59575426 - MLT1G LTR MaLR -30 535 415 1105 268 10 17 chr6 122839819 122840110 -59575132 - MLT1G LTR MaLR -286 304 16 474 223 65 121 chr6 122840260 122840642 -59574600 + MLT1G LTR MaLR 4 376 -214 287 289 123 34 chr6 122840619 122840823 -59574419 + MLT1E3 LTR MaLR 304 525 -17 * 2211 52 0 81 chr6 122841143 122841489 -59573753 + AluY SINE Alu 1 321 0 204 324 68 97 chr6 122841495 122841804 -59573438 - L2 LINE L2 -494 2820 2521 1482 189 7 32 chr6 122842547 122842828 -59572414 + AluJo SINE Alu 13 286 -26 4139 82 0 12 chr6 122842962 122843558 -59571684 - THE1A-int LTR MaLR -991 589 1 2337 97 23 9 chr6 122843558 122843908 -59571334 - THE1A LTR MaLR 0 355 1 222 277 0 0 chr6 122843962 122844009 -59571233 + L2 LINE L2 3256 3302 -11 2569 128 21 39 chr6 122844142 122844342 -59570900 + MSTA LTR MaLR 1 203 -225 2431 57 14 0 chr6 122844342 122844639 -59570603 + AluY SINE Alu 1 301 -10 2569 128 21 39 chr6 122844639 122844874 -59570368 + MSTA LTR MaLR 203 428 0 216 307 57 11 chr6 122845167 122845255 -59569987 - L2 LINE L2 -12 3260 3169 27 49 0 0 chr6 122845454 122845495 -59569747 + AT_rich Low_complexity Low_complexity 1 41 0 460 260 90 42 chr6 122845714 122846007 -59569235 - L1MC/D LINE L1 -754 5628 5389 529 317 32 34 chr6 122846028 122846417 -59568825 - L1MC/D LINE L1 -4618 1764 1267 1716 152 55 36 chr6 122846437 122846800 -59568442 - THE1C LTR MaLR 0 375 6 3138 245 42 60 chr6 122846802 122847861 -59567381 - L1MC/D LINE L1 -5158 1405 369 1836 176 7 81 chr6 122847861 122848282 -59566960 - MLT1B LTR MaLR 0 390 1 3138 245 42 60 chr6 122848282 122848448 -59566794 - L1MC/D LINE L1 -6194 369 202 598 296 30 27 chr6 122848491 122848819 -59566423 - L1M4 LINE L1 -1062 5084 4756 1062 245 64 31 chr6 122848912 122849271 -59565971 - MLT1C LTR MaLR 0 467 97 2511 227 128 5 chr6 122849278 122850014 -59565228 - L1ME1 LINE L1 -80 6086 5261 392 152 40 7 chr6 122850058 122850362 -59564880 + (TA)n Simple_repeat Simple_repeat 1 314 0 395 196 80 29 chr6 122850374 122850512 -59564730 - L1ME1 LINE L1 -861 5285 5141 300 264 79 7 chr6 122850601 122850741 -59564501 - MIR SINE MIR 0 262 113 322 303 56 11 chr6 122850836 122850925 -59564317 - MIR SINE MIR -156 106 14 22 35 0 0 chr6 122851130 122851159 -59564083 + AT_rich Low_complexity Low_complexity 1 29 0 1803 165 41 0 chr6 122851302 122851593 -59563649 + AluJb SINE Alu 1 303 -9 426 296 91 23 chr6 122852886 122853062 -59562180 + MIR SINE MIR 46 233 -29 213 217 22 0 chr6 122853093 122853139 -59562103 + (TTG)n Simple_repeat Simple_repeat 3 49 0 300 251 108 92 chr6 122854647 122855037 -59560205 + L1ME4a LINE L1 5725 6120 -1 2181 148 21 8 chr6 122855260 122855637 -59559605 + MLT1B LTR MaLR 3 384 -6 603 291 57 14 chr6 122855790 122856000 -59559242 - MLT1H LTR MaLR -292 257 39 266 196 59 0 chr6 122856354 122856405 -59558837 + L2 LINE L2 3209 3262 -10 458 360 71 0 chr6 122857915 122858101 -59557141 + MIR SINE MIR 20 224 -38 1575 226 28 19 chr6 122858101 122858463 -59556779 - MLT1A1 LTR MaLR 0 365 1 458 360 71 0 chr6 122858463 122858487 -59556755 + MIR SINE MIR 224 245 -17 255 346 107 63 chr6 122858503 122858867 -59556375 - L2 LINE L2 -759 2555 2176 287 290 40 0 chr6 122859026 122859150 -59556092 + L1MC/D LINE L1 5721 5849 -1959 29 0 0 0 chr6 122860650 122860679 -59554563 + AT_rich Low_complexity Low_complexity 1 29 0 5663 157 12 10 chr6 122860791 122862052 -59553190 - L1MA4 LINE L1 -30 6270 5011 976 132 0 0 chr6 122862062 122862198 -59553044 - AluSp/q SINE Alu -15 298 163 1094 94 6 6 chr6 122862202 122862362 -59552880 + MLT2A1 LTR ERVL 210 369 -75 5418 141 19 43 chr6 122862365 122863047 -59552195 - L1M1 LINE L1 -4065 1263 566 1720 125 97 31 chr6 122863047 122863398 -59551844 - THE1C LTR MaLR 0 375 2 975 122 17 0 chr6 122863406 122863578 -59551664 + CT-rich Low_complexity Low_complexity 2 176 0 5418 141 19 43 chr6 122863578 122863966 -59551276 - L1M1 LINE L1 -4769 559 311 1589 193 3 3 chr6 122864079 122864380 -59550862 - L1M1 LINE L1 -5014 314 14 5603 97 22 5 chr6 122864447 122865685 -59549557 + SVA Other Other 6 1380 -6 261 0 0 0 chr6 122865695 122865724 -59549518 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 799 201 40 0 chr6 122866060 122866234 -59549008 + L1MC4 LINE L1 7358 7538 -504 343 267 23 0 chr6 122866236 122866322 -59548920 - MIR SINE MIR -91 117 30 189 107 0 0 chr6 122866331 122866359 -59548883 + (CATCC)n Simple_repeat Simple_repeat 2 29 0 206 103 0 26 chr6 122866416 122866455 -59548787 + (CATTC)n Simple_repeat Simple_repeat 3 40 0 476 257 7 69 chr6 122866459 122866603 -59548639 - L2 LINE L2 -1 3271 3137 315 226 48 0 chr6 122866636 122866720 -59548522 - L1MC4 LINE L1 -1340 6702 6615 280 216 39 29 chr6 122866724 122866826 -59548416 + LTR41 LTR ERVL 659 761 -12 315 304 101 30 chr6 122867192 122867360 -59547882 - MIR3 SINE MIR -23 185 6 2144 130 7 0 chr6 122869592 122869892 -59545350 + AluSx SINE Alu 1 302 -10 561 137 65 24 chr6 122869908 122870032 -59545210 - MIR SINE MIR -48 214 86 1359 193 102 14 chr6 122870472 122870747 -59544495 + AluJo SINE Alu 1 299 -13 2238 96 7 3 chr6 122870748 122871049 -59544193 + AluSg SINE Alu 1 302 -8 318 259 102 19 chr6 122871851 122871959 -59543283 + L1ME3 LINE L1 5774 5890 -272 1068 103 0 12 chr6 122872175 122872340 -59542902 + L1PB1 LINE L1 5987 6149 -2 218 254 123 92 chr6 122872957 122873087 -59542155 + L2 LINE L2 3180 3313 0 36 53 0 0 chr6 122874687 122874744 -59540498 + AT_rich Low_complexity Low_complexity 1 57 0 201 319 86 43 chr6 122875439 122875555 -59539687 - L2 LINE L2 -15 3257 3137 211 279 0 0 chr6 122876237 122876298 -59538944 + CT-rich Low_complexity Low_complexity 3 63 0 1533 173 45 4 chr6 122877411 122877677 -59537565 - AluJo SINE Alu -35 277 1 338 271 34 25 chr6 122877677 122877795 -59537447 - MIR SINE MIR -98 164 46 702 163 7 34 chr6 122877945 122878092 -59537150 + FLAM_C SINE Alu 1 143 0 244 250 0 0 chr6 122878543 122878591 -59536651 + Tigger5 DNA MER2_type 1 48 -2275 1292 158 13 13 chr6 122878613 122878847 -59536395 + Tigger5 DNA MER2_type 2090 2323 0 21 57 0 0 chr6 122879143 122879178 -59536064 + AT_rich Low_complexity Low_complexity 1 35 0 564 317 22 4 chr6 122880072 122880302 -59534940 + HAL1 LINE L1 1 234 -2273 269 291 283 22 chr6 122881068 122881556 -59533686 + HAL1 LINE L1 1667 2281 -226 2077 110 13 7 chr6 122882667 122882968 -59532274 - AluSp SINE Alu -10 303 1 255 216 23 45 chr6 122883095 122883183 -59532059 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 1997 117 6 54 chr6 122883263 122883580 -59531662 - AluSx SINE Alu -7 305 4 2420 51 7 0 chr6 122884358 122884654 -59530588 - AluY SINE Alu -13 298 1 419 156 31 52 chr6 122884963 122885095 -59530147 - MER5A DNA MER1_type 0 189 1 4267 212 99 15 chr6 122886665 122887743 -59527499 + Cheshire DNA MER1_type 2 1170 -1250 2228 94 3 0 chr6 122888107 122888395 -59526847 - AluSg SINE Alu -15 295 7 1657 179 25 0 chr6 122888416 122888701 -59526541 - AluJb SINE Alu -20 292 1 2120 103 3 23 chr6 122890377 122890679 -59524563 - AluSx SINE Alu -16 296 1 1593 187 20 10 chr6 122893705 122894005 -59521237 - MER2 DNA MER2_type -25 320 18 753 259 69 26 chr6 122894992 122895224 -59520018 - MIR SINE MIR -3 259 18 23 33 0 0 chr6 122895298 122895328 -59519914 + AT_rich Low_complexity Low_complexity 1 30 0 2146 96 0 10 chr6 122895572 122895865 -59519377 + AluSc SINE Alu 1 290 -19 205 98 49 0 chr6 122896449 122896490 -59518752 + GA-rich Low_complexity Low_complexity 3 45 0 185 406 0 0 chr6 122896664 122896765 -59518477 - L2 LINE L2 -1018 2296 2196 702 205 86 0 chr6 122896828 122896979 -59518263 + FAM SINE Alu 4 167 -8 2180 110 0 0 chr6 122897130 122897422 -59517820 - AluSg SINE Alu -18 292 1 21 0 0 0 chr6 122897511 122897532 -59517710 + AT_rich Low_complexity Low_complexity 1 21 0 419 318 52 60 chr6 122898199 122898451 -59516791 + MIR SINE MIR 2 251 -11 1464 167 123 22 chr6 122899256 122899525 -59515717 + AluJo SINE Alu 1 296 -16 672 224 0 0 chr6 122899527 122899692 -59515550 + (TATATG)n Simple_repeat Simple_repeat 4 168 0 822 144 0 0 chr6 122900002 122900120 -59515122 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr6 122900120 122900141 -59515101 + AT_rich Low_complexity Low_complexity 1 21 0 226 202 137 73 chr6 122900259 122900383 -59514859 + MIR SINE MIR 106 237 -25 536 317 165 22 chr6 122900564 122901018 -59514224 + L2 LINE L2 1176 1694 -1620 1581 95 4 4 chr6 122901055 122901287 -59513955 - Tigger4(Zombi) DNA MER2_type -2 2729 2498 1470 174 46 4 chr6 122901325 122901584 -59513658 - Tigger4(Zombi) DNA MER2_type -2461 270 1 1010 311 94 32 chr6 122901590 122902344 -59512898 + L2 LINE L2 1729 3070 -202 630 264 75 93 chr6 122902506 122902840 -59512402 + L2 LINE L2 2981 3308 -5 334 271 17 25 chr6 122903129 122903247 -59511995 + L2 LINE L2 3195 3311 -2 245 299 51 26 chr6 122903448 122903565 -59511677 + L2 LINE L2 3187 3306 -7 196 73 0 49 chr6 122904342 122904383 -59510859 + (CCCCG)n Simple_repeat Simple_repeat 1 39 0 240 264 23 11 chr6 122904430 122904517 -59510725 + C-rich Low_complexity Low_complexity 4 91 0 207 162 0 0 chr6 122906873 122906910 -59508332 + (CTG)n Simple_repeat Simple_repeat 2 38 0 337 255 110 86 chr6 122908161 122908416 -59506826 - L1M2 LINE L1 -5822 1027 767 23 68 0 0 chr6 122909034 122909078 -59506164 + GC_rich Low_complexity Low_complexity 1 44 0 231 298 8 0 chr6 122909392 122909513 -59505729 + (CGG)n Simple_repeat Simple_repeat 2 123 0 34 65 0 0 chr6 122909634 122909696 -59505546 + GC_rich Low_complexity Low_complexity 1 62 0 212 205 26 0 chr6 122912211 122912250 -59502992 + L2 LINE L2 3213 3252 -20 23 86 0 0 chr6 122912731 122912789 -59502453 + AT_rich Low_complexity Low_complexity 1 58 0 201 94 0 0 chr6 122913030 122913062 -59502180 + (TA)n Simple_repeat Simple_repeat 2 33 0 745 133 9 9 chr6 122913066 122913179 -59502063 - FLAM_C SINE Alu -24 119 7 314 286 117 0 chr6 122913801 122913955 -59501287 + MARNA DNA Mariner 203 374 -212 1631 131 97 0 chr6 122914291 122914558 -59500684 - AluSx SINE Alu -14 298 6 1549 170 85 7 chr6 122915682 122915953 -59499289 - AluJb SINE Alu -13 299 8 1256 163 100 6 chr6 122916336 122916641 -59498601 - MER33 DNA MER1_type -1 323 1 922 181 32 16 chr6 122916823 122917011 -59498231 + MLT1B LTR MaLR 1 191 -199 1271 242 75 60 chr6 122917065 122917298 -59497944 - L1MC5 LINE L1 -175 7786 7558 2701 157 77 0 chr6 122917298 122917776 -59497466 + MLT2B2 LTR ERVL 1 515 0 1271 242 75 60 chr6 122917776 122918198 -59497044 - L1MC5 LINE L1 -403 7558 7121 327 100 17 50 chr6 122918205 122918265 -59496977 - MER66B LTR ERV1 -141 345 288 917 135 0 0 chr6 122918278 122918411 -59496831 - FLAM_C SINE Alu 0 133 1 627 160 68 108 chr6 122918419 122918574 -59496668 - L1MC5 LINE L1 -834 7127 6984 1894 113 110 27 chr6 122918574 122918910 -59496332 + THE1B LTR MaLR 1 364 0 627 160 68 108 chr6 122918910 122919004 -59496238 - L1MC5 LINE L1 -977 6984 6888 2028 125 0 26 chr6 122920408 122920711 -59494531 - AluSx SINE Alu -17 295 1 287 24 0 24 chr6 122920922 122920963 -59494279 + (TA)n Simple_repeat Simple_repeat 2 41 0 191 337 0 48 chr6 122921656 122921739 -59493503 - L2 LINE L2 -1 3312 3234 32 0 0 0 chr6 122921991 122922023 -59493219 + AT_rich Low_complexity Low_complexity 1 32 0 1078 224 77 111 chr6 122922057 122922130 -59493112 - MLT1G LTR MaLR 0 590 516 543 189 55 0 chr6 122922130 122922257 -59492985 - L1MA10 LINE L1 -2 6332 6199 1078 224 77 111 chr6 122922257 122922794 -59492448 - MLT1G LTR MaLR -74 516 1 205 22 89 22 chr6 122923060 122923105 -59492137 + (TTATA)n Simple_repeat Simple_repeat 3 50 0 2008 131 32 0 chr6 122923278 122923561 -59491681 + AluSc SINE Alu 1 292 -17 27 0 0 0 chr6 122924515 122924542 -59490700 + AT_rich Low_complexity Low_complexity 1 27 0 362 324 45 0 chr6 122924963 122925074 -59490168 - L2 LINE L2 -16 3256 3141 320 297 9 0 chr6 122925233 122925344 -59489898 + L1MC/D LINE L1 5132 5243 -903 1124 298 49 9 chr6 122925421 122925870 -59489372 + L1MC/D LINE L1 5338 5804 -2004 1239 257 75 50 chr6 122925870 122926407 -59488835 - MLT1H1 LTR MaLR 0 555 6 283 263 0 0 chr6 122926407 122926487 -59488755 + L1MC/D LINE L1 5798 5877 -1931 2251 119 0 0 chr6 122927006 122927308 -59487934 - AluSx SINE Alu -2 310 9 21 0 0 0 chr6 122928784 122928805 -59486437 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 122929176 122929210 -59486032 + AT_rich Low_complexity Low_complexity 1 34 0 2608 112 18 5 chr6 122929421 122929806 -59485436 - L1PA13 LINE L1 -2 6161 5772 186 71 0 0 chr6 122929923 122929951 -59485291 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1500 198 10 22 chr6 122929958 122930271 -59484971 - AluJb SINE Alu -3 309 1 687 171 30 61 chr6 122930494 122930658 -59484584 + MIR SINE MIR 85 243 -19 2500 125 15 77 chr6 122931889 122932369 -59482873 + L1MA5 LINE L1 5851 6300 0 195 238 60 60 chr6 122932736 122932820 -59482422 - L2 LINE L2 -1522 1792 1709 215 220 85 0 chr6 122934107 122934166 -59481076 - MIR SINE MIR -131 131 68 334 291 18 18 chr6 122934339 122934449 -59480793 + GA-rich Low_complexity Low_complexity 3 112 0 1932 154 0 7 chr6 122934974 122935266 -59479976 - AluSx SINE Alu -21 291 2 473 282 143 12 chr6 122935312 122935557 -59479685 + L2 LINE L2 3033 3309 -4 331 258 124 0 chr6 122935678 122935775 -59479467 - MIR SINE MIR -148 114 6 363 23 0 0 chr6 122935789 122935833 -59479409 + (TG)n Simple_repeat Simple_repeat 1 44 0 2241 100 0 19 chr6 122936218 122936529 -59478713 - AluSc SINE Alu -4 305 1 2105 137 0 0 chr6 122936862 122937162 -59478080 - AluSq SINE Alu -13 300 1 443 259 68 27 chr6 122937274 122937421 -59477821 - MER46A DNA MER2_type -76 160 8 * 1116 186 51 0 chr6 122937295 122937510 -59477732 + MER46A DNA MER2_type 11 236 0 1063 240 72 23 chr6 122937688 122937992 -59477250 - MER46C DNA MER2_type -1 337 19 216 247 49 25 chr6 122938158 122938239 -59477003 + L2 LINE L2 1990 2072 -1242 307 207 72 81 chr6 122938274 122938385 -59476857 - L2 LINE L2 -3 3310 3201 610 302 119 30 chr6 122938417 122938778 -59476464 + L2 LINE L2 2185 2577 -737 2282 85 0 35 chr6 122939133 122939449 -59475793 - AluSg SINE Alu -5 305 1 2240 95 0 20 chr6 122940046 122940350 -59474892 + AluSq SINE Alu 1 298 -15 2055 104 46 0 chr6 122940927 122941207 -59474035 - AluSq SINE Alu -20 293 1 209 314 14 14 chr6 122941532 122941602 -59473640 - MIR3 SINE MIR -7 201 132 219 148 37 19 chr6 122944099 122944153 -59471089 + G-rich Low_complexity Low_complexity 5 59 0 21 71 0 0 chr6 122944589 122944631 -59470611 + GC_rich Low_complexity Low_complexity 1 42 0 240 86 0 0 chr6 122944724 122944759 -59470483 + (CTG)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 122945429 122945449 -59469793 + (TTA)n Simple_repeat Simple_repeat 2 21 0 273 273 164 24 chr6 122945610 122945775 -59469467 - MIR SINE MIR -66 196 9 278 190 69 0 chr6 122946275 122946333 -59468909 + MIR SINE MIR 84 145 -117 24 0 0 0 chr6 122946540 122946564 -59468678 + AT_rich Low_complexity Low_complexity 1 24 0 1732 114 3 138 chr6 122947629 122947970 -59467272 - AluYa8 SINE Alu -5 295 1 562 231 45 82 chr6 122948045 122948288 -59466954 + MLT1J LTR MaLR 278 511 0 1214 204 52 113 chr6 122948344 122948824 -59466418 + LTR40b LTR ERVL 3 453 -9 578 271 79 87 chr6 122948868 122949003 -59466239 + MER89-int LTR ERV1 6081 6215 -586 2264 107 3 3 chr6 122949003 122949312 -59465930 + AluSc SINE Alu 1 309 0 578 271 79 87 chr6 122949312 122949579 -59465663 + MER89-int LTR ERV1 6215 6480 -321 * 644 205 161 0 chr6 122949577 122949738 -59465504 + HERVL40 LTR ERVL 5305 5491 -39 1342 244 23 0 chr6 122949958 122950257 -59464985 + LTR40b LTR ERVL 157 462 0 972 202 139 19 chr6 122950272 122950480 -59464762 + MER8 DNA MER2_type 7 239 0 294 79 0 0 chr6 122950682 122950720 -59464522 + MLT2B2 LTR ERVL 478 515 0 25 65 0 0 chr6 122951225 122951271 -59463971 + AT_rich Low_complexity Low_complexity 1 46 0 202 235 0 20 chr6 122951359 122951410 -59463832 + T-rich Low_complexity Low_complexity 1 50 0 429 337 11 23 chr6 122951746 122951921 -59463321 - MER5A DNA MER1_type 0 189 17 2130 122 3 0 chr6 122952121 122952446 -59462796 - AluSx SINE Alu 0 326 1 1325 128 0 0 chr6 122952648 122952828 -59462414 + AluSx SINE Alu 1 180 -132 1978 105 7 21 chr6 122953799 122954084 -59461158 - AluSg SINE Alu -9 301 21 2226 101 0 7 chr6 122955067 122955365 -59459877 - AluSx SINE Alu -16 296 1 24 0 0 0 chr6 122955367 122955391 -59459851 + AT_rich Low_complexity Low_complexity 1 24 0 230 310 23 23 chr6 122955596 122955683 -59459559 + MLT1K LTR MaLR 205 291 -363 333 231 91 83 chr6 122955746 122955867 -59459375 + MLT2F LTR ERVL 276 663 0 1493 209 7 10 chr6 122956982 122957001 -59458241 - AluJb SINE Alu -12 300 282 255 31 0 0 chr6 122957001 122957033 -59458209 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 1493 209 7 10 chr6 122957033 122957314 -59457928 - AluJb SINE Alu -30 282 1 533 259 7 28 chr6 122958332 122958475 -59456767 + MLT1K LTR MaLR 449 588 0 1011 211 142 9 chr6 122959469 122960010 -59455232 - L1MC4 LINE L1 0 8042 7272 927 235 96 11 chr6 122960010 122960282 -59454960 - MLT1G1 LTR MaLR -298 297 3 2227 111 0 3 chr6 122960609 122960906 -59454336 - AluSg SINE Alu -14 296 1 3240 211 27 62 chr6 122961294 122961577 -59453665 + L1ME1 LINE L1 5317 5608 -558 2184 103 10 7 chr6 122961577 122961877 -59453365 + AluSq SINE Alu 1 301 -12 730 214 0 0 chr6 122961885 122962002 -59453240 + FLAM_A SINE Alu 2 118 -15 3240 211 27 62 chr6 122962002 122962589 -59452653 + L1ME1 LINE L1 5615 6165 -1 2325 105 0 0 chr6 122962661 122962966 -59452276 - AluSg SINE Alu -5 305 1 2465 111 21 29 chr6 122964628 122965006 -59450236 + THE1C LTR MaLR 1 375 0 575 265 42 16 chr6 122965441 122965630 -59449612 - MLT1L LTR MaLR -4 611 418 715 236 34 11 chr6 122966497 122966675 -59448567 - MIR SINE MIR -62 200 19 360 258 119 70 chr6 122966720 122966875 -59448367 + MER112 DNA MER1_type 1 174 -82 2391 83 10 0 chr6 122966875 122967175 -59448067 - AluY SINE Alu -8 303 1 360 258 119 70 chr6 122967175 122967263 -59447979 + MER112 DNA MER1_type 174 256 0 2266 152 16 25 chr6 122967319 122967687 -59447555 - MLT1A1 LTR MaLR 0 365 1 317 306 117 33 chr6 122967830 122968137 -59447105 - L2 LINE L2 -1063 2251 1919 1696 112 8 8 chr6 122968159 122968401 -59446841 - THE1B LTR MaLR -2 362 121 6303 103 10 2 chr6 122968401 122969416 -59445826 + L1ME LINE L1 4501 5520 -644 227 231 19 0 chr6 122969417 122969469 -59445773 + L3 LINE CR1 964 1016 -561 1006 169 0 12 chr6 122969671 122969837 -59445405 - FRAM SINE Alu -9 167 4 897 191 101 0 chr6 122970261 122970449 -59444793 - MER3 DNA MER1_type -1 208 2 207 0 0 0 chr6 122970612 122970635 -59444607 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2141 123 0 0 chr6 122970637 122970929 -59444313 - AluSx SINE Alu -20 292 1 705 244 136 89 chr6 122971181 122971607 -59443635 + MLT1J2 LTR MaLR 3 448 -2 234 308 11 99 chr6 122971627 122971763 -59443479 + L2 LINE L2 335 453 -2861 2021 117 38 0 chr6 122971763 122972053 -59443189 - AluSx SINE Alu -11 301 1 234 308 11 99 chr6 122972053 122972098 -59443144 + L2 LINE L2 453 500 -2814 185 193 35 53 chr6 122973660 122973717 -59441525 + MIR SINE MIR 157 212 -50 2294 104 0 19 chr6 123025848 123026166 -59389076 - AluSx SINE Alu 0 312 1 21 0 0 0 chr6 123026687 123026708 -59388534 + AT_rich Low_complexity Low_complexity 1 21 0 1715 181 0 20 chr6 123027277 123027581 -59387661 - AluJb SINE Alu -14 298 1 2013 131 0 3 chr6 123027605 123027914 -59387328 + AluSg SINE Alu 1 308 0 35 0 0 0 chr6 123028362 123028397 -59386845 + AT_rich Low_complexity Low_complexity 1 35 0 2098 121 0 14 chr6 123028456 123028753 -59386489 + AluSx SINE Alu 1 293 -19 230 378 35 29 chr6 123029358 123029530 -59385712 - L2 LINE L2 -183 3089 2917 499 225 127 14 chr6 123029691 123029833 -59385409 + MIR SINE MIR 105 262 0 206 307 9 35 chr6 123030179 123030293 -59384949 + CT-rich Low_complexity Low_complexity 2 112 0 181 284 95 11 chr6 123030329 123030424 -59384818 + L2 LINE L2 3170 3272 0 1465 67 0 0 chr6 123030609 123030788 -59384454 + L1PA6 LINE L1 5795 5973 -181 1917 184 28 86 chr6 123030928 123031144 -59384098 - MER63B DNA MER1_type -626 436 260 2171 109 3 3 chr6 123031144 123031437 -59383805 - AluSg SINE Alu -17 293 1 1917 184 28 86 chr6 123031437 123031683 -59383559 - MER63B DNA MER1_type -802 260 1 183 286 0 0 chr6 123031711 123031760 -59383482 + MIR SINE MIR 193 241 -21 254 227 0 0 chr6 123031858 123031902 -59383340 - MIR SINE MIR -88 120 77 399 217 0 0 chr6 123032712 123032781 -59382461 + L1MD3 LINE L1 6785 6853 -1142 1859 201 25 8 chr6 123032840 123033199 -59382043 - MLT1A1 LTR MaLR 0 365 1 842 183 61 30 chr6 123033264 123033461 -59381781 + MER58A DNA MER1_type 22 224 0 339 297 159 0 chr6 123033462 123033600 -59381642 + L1 LINE L1 3596 3755 -2391 272 297 99 73 chr6 123033711 123033903 -59381339 - L2 LINE L2 -43 3229 3033 1194 136 5 61 chr6 123033999 123034164 -59381078 - AluJo SINE Alu -15 297 124 195 42 0 0 chr6 123034164 123034188 -59381054 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2181 92 4 0 chr6 123034188 123034469 -59380773 - AluSg SINE Alu -28 282 1 1194 136 5 61 chr6 123034469 123034515 -59380727 - AluJo SINE Alu -186 126 97 195 361 0 12 chr6 123034611 123034694 -59380548 + L2 LINE L2 3200 3281 -32 446 274 9 0 chr6 123036532 123036645 -59378597 + MIR SINE MIR 34 147 -61 2222 108 0 0 chr6 123037306 123037601 -59377641 + AluSc SINE Alu 1 295 -14 315 161 0 0 chr6 123038447 123038503 -59376739 + (CA)n Simple_repeat Simple_repeat 2 57 0 751 208 17 0 chr6 123039865 123039985 -59375257 - FLAM_A SINE Alu -11 122 1 2537 170 13 62 chr6 123040947 123041477 -59373765 - MLT1D LTR MaLR 0 505 2 366 226 24 12 chr6 123041639 123041716 -59373526 + AluJo/FLAM SINE Alu 43 123 -179 1487 173 93 0 chr6 123041716 123041994 -59373248 - AluJb SINE Alu -8 304 1 1996 126 192 16 chr6 123046089 123046453 -59368789 + MSTA LTR MaLR 1 428 0 2364 97 0 0 chr6 123046629 123046928 -59368314 - AluSg SINE Alu -11 299 1 721 151 134 47 chr6 123047128 123047300 -59367942 + MER105 DNA DNA 17 203 -1 2037 128 10 0 chr6 123048284 123048573 -59366669 + AluSx SINE Alu 1 292 -20 2100 124 7 0 chr6 123049849 123050148 -59365094 + AluSx SINE Alu 1 301 -11 532 319 83 72 chr6 123051194 123051627 -59363615 - L2 LINE L2 -7 3265 2828 287 262 154 13 chr6 123051722 123051871 -59363371 - MIR SINE MIR -14 248 79 224 322 58 25 chr6 123052085 123052206 -59363036 + MIR SINE MIR 70 194 -68 235 175 79 48 chr6 123052896 123052959 -59362283 - MER5A DNA MER1_type -37 152 88 1984 115 70 0 chr6 123052989 123053275 -59361967 + AluSg SINE Alu 1 306 -4 242 292 42 0 chr6 123054506 123054578 -59360664 + MIR SINE MIR 106 180 -82 27 81 0 0 chr6 123055323 123055385 -59359857 + AT_rich Low_complexity Low_complexity 1 62 0 201 146 24 24 chr6 123055836 123055877 -59359365 - MIR SINE MIR -63 199 159 262 270 217 48 chr6 123055886 123056075 -59359167 - MIR SINE MIR -11 251 31 2029 118 13 16 chr6 123056133 123056437 -59358805 - AluSx SINE Alu -9 303 1 294 123 14 110 chr6 123056460 123056533 -59358709 - L1PB2 LINE L1 -7 6144 6079 1352 125 9 49 chr6 123056563 123056787 -59358455 - L1PB2 LINE L1 -7 6144 5930 476 334 157 34 chr6 123057275 123057805 -59357437 + L2 LINE L2 2371 2965 -349 251 230 90 60 chr6 123057824 123057924 -59357318 + MIR SINE MIR 131 233 -29 289 331 79 79 chr6 123057931 123058236 -59357006 + L2 LINE L2 2968 3272 0 403 277 25 0 chr6 123058400 123058519 -59356723 - L1MC4 LINE L1 -54 7988 7867 1099 163 100 163 chr6 123059006 123059293 -59355949 - MER63B DNA MER1_type -687 375 118 7278 61 6 10 chr6 123059293 123060920 -59354322 + L1PA6 LINE L1 4526 6150 -4 1099 163 100 163 chr6 123060920 123061031 -59354211 - MER63B DNA MER1_type -944 118 2 27 49 0 0 chr6 123061399 123061440 -59353802 + AT_rich Low_complexity Low_complexity 1 41 0 306 244 100 0 chr6 123061650 123061740 -59353502 - L2 LINE L2 -3 3269 3171 577 232 169 0 chr6 123062124 123062266 -59352976 + MER45A DNA AcHobo 13 178 0 257 358 42 0 chr6 123062835 123062955 -59352287 + MIR3 SINE MIR 81 205 -3 2113 104 37 10 chr6 123064812 123065111 -59350131 - AluSg SINE Alu -2 308 2 227 272 112 59 chr6 123065184 123065354 -59349888 - MIR SINE MIR -62 146 25 5635 140 19 3 chr6 123065449 123066325 -59348917 - Tigger1 DNA MER2_type -1 2417 1528 7222 99 26 15 chr6 123066434 123067503 -59347739 + Tigger3b DNA MER2_type 150 1230 -1 189 0 0 0 chr6 123067544 123067565 -59347677 + (T)n Simple_repeat Simple_repeat 1 21 0 252 335 203 14 chr6 123068062 123068274 -59346968 + L2 LINE L2 2819 3070 -202 2079 94 4 0 chr6 123069278 123069545 -59345697 - AluSg SINE Alu -2 308 41 509 234 9 9 chr6 123072312 123072419 -59342823 - MER81 DNA DNA -7 107 1 444 283 30 32 chr6 123072437 123072742 -59342500 + L2 LINE L2 2945 3311 -2 1902 167 0 16 chr6 123072848 123073165 -59342077 + AluJo SINE Alu 1 312 0 2151 107 0 17 chr6 123074896 123075195 -59340047 - AluSp SINE Alu -19 294 1 1583 128 0 39 chr6 123075198 123075455 -59339787 - Tigger1 DNA MER2_type -942 1476 1230 4090 106 16 0 chr6 123075502 123076060 -59339182 + L1PA16 LINE L1 5591 6157 -9 2788 151 37 2 chr6 123076082 123076538 -59338704 - Tigger1 DNA MER2_type -1943 475 4 997 127 57 47 chr6 123076971 123077183 -59338059 - L1MB8 LINE L1 -9 6169 5956 426 198 21 31 chr6 123077674 123077768 -59337474 - MER67A LTR ERV1 0 543 451 1768 155 173 25 chr6 123077768 123078204 -59337038 + LTR10A LTR ERV1 1 548 -61 564 241 42 46 chr6 123078222 123078504 -59336738 - MER67B LTR ERV1 -79 582 267 397 164 52 0 chr6 123078585 123078672 -59336570 - MER67D LTR ERV1 -310 204 132 529 300 57 51 chr6 123078684 123079221 -59336021 - L1MEd LINE L1 -1016 1474 843 2045 94 4 4 chr6 123079939 123080214 -59335028 - AluSc SINE Alu 0 309 35 479 324 162 15 chr6 123080224 123080564 -59334678 - L1MEd LINE L1 -5284 835 446 2151 180 110 33 chr6 123081292 123081803 -59333439 + MLT1E2 LTR MaLR 69 618 -8 309 349 90 26 chr6 123082479 123082668 -59332574 + L2 LINE L2 2891 3091 -181 803 171 228 0 chr6 123083175 123083421 -59331821 + MER33 DNA MER1_type 1 302 -22 22 0 0 0 chr6 123083641 123083663 -59331579 + AT_rich Low_complexity Low_complexity 1 22 0 219 204 0 0 chr6 123083962 123084016 -59331226 + (TA)n Simple_repeat Simple_repeat 1 54 0 326 312 11 0 chr6 123084122 123084215 -59331027 - MIR3 SINE MIR -15 193 100 182 323 48 0 chr6 123084243 123084305 -59330937 + L2 LINE L2 3233 3297 -16 186 43 0 0 chr6 123084308 123084331 -59330911 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 343 333 78 22 chr6 123084720 123084900 -59330342 - MIR SINE MIR -11 251 62 211 299 13 13 chr6 123085657 123085734 -59329508 + CT-rich Low_complexity Low_complexity 4 80 0 2234 77 3 24 chr6 123086641 123086939 -59328303 + AluY SINE Alu 1 292 -19 330 286 11 11 chr6 123087345 123087436 -59327806 + MIR3 SINE MIR 100 190 -18 607 276 43 47 chr6 123087854 123087897 -59327345 - MIR SINE MIR -1 261 219 234 0 0 0 chr6 123087897 123087923 -59327319 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2192 108 7 3 chr6 123087925 123088220 -59327022 - AluSq SINE Alu -17 296 1 607 276 43 47 chr6 123088220 123088427 -59326815 - MIR SINE MIR -44 218 9 342 61 0 0 chr6 123088587 123088636 -59326606 + (TG)n Simple_repeat Simple_repeat 2 50 0 1163 209 43 31 chr6 123089935 123090420 -59324822 + MLT1E LTR MaLR 8 593 0 280 322 11 0 chr6 123090458 123090548 -59324694 + L2 LINE L2 2407 2497 -817 268 362 129 48 chr6 123090876 123091343 -59323899 + L2 LINE L2 2551 3056 -216 26 64 0 0 chr6 123093632 123093679 -59321563 + AT_rich Low_complexity Low_complexity 1 47 0 262 219 26 18 chr6 123093728 123093842 -59321400 + (TA)n Simple_repeat Simple_repeat 1 115 0 243 269 0 0 chr6 123094084 123094136 -59321106 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 4709 107 5 1 chr6 123096788 123097451 -59317791 + L1PA15 LINE L1 5495 6159 -6 654 120 86 51 chr6 123098468 123098585 -59316657 + FRAM SINE Alu 38 158 -18 298 148 98 0 chr6 123098829 123098890 -59316352 - FLAM_A SINE Alu -5 128 62 2222 71 39 36 chr6 123098928 123099237 -59316005 - AluY SINE Alu -1 310 1 227 286 48 16 chr6 123099371 123099434 -59315808 - MIR SINE MIR -115 93 29 24 32 0 0 chr6 123100727 123100758 -59314484 + AT_rich Low_complexity Low_complexity 1 31 0 2744 237 71 4 chr6 123102406 123103249 -59311993 + L1M4 LINE L1 3764 4663 -1483 592 234 51 11 chr6 123103337 123103512 -59311730 - LTR41 LTR ERVL -6 767 586 356 259 43 9 chr6 123103607 123103723 -59311519 - LTR41 LTR ERVL -319 454 335 907 207 35 0 chr6 123103737 123103935 -59311307 - LTR41 LTR ERVL -568 205 1 646 175 54 42 chr6 123103940 123104106 -59311136 + L1MA10 LINE L1 6164 6331 -3 2033 149 0 0 chr6 123104113 123104409 -59310833 + AluJb SINE Alu 1 296 -16 192 179 0 0 chr6 123104493 123104532 -59310710 + (TATG)n Simple_repeat Simple_repeat 2 40 0 488 250 17 80 chr6 123105037 123105213 -59310029 - L2 LINE L2 -16 3297 3133 180 115 0 0 chr6 123105262 123105288 -59309954 + L2 LINE L2 3154 3179 -93 504 326 102 17 chr6 123106992 123107336 -59307906 + L2 LINE L2 753 1125 -2189 1577 167 145 36 chr6 123107342 123107790 -59307452 + MLT1D LTR MaLR 8 504 -1 1011 317 94 16 chr6 123107790 123108235 -59307007 + L2 LINE L2 1119 1598 -1716 876 322 96 17 chr6 123108235 123108835 -59306407 + L2 LINE L2 2412 3063 -209 202 327 67 29 chr6 123110175 123110279 -59304963 + L2 LINE L2 3158 3265 -7 371 286 99 35 chr6 123112602 123112776 -59302466 + MIR SINE MIR 38 220 -42 228 372 74 0 chr6 123113201 123113322 -59301920 - MIR SINE MIR -80 182 53 976 293 40 24 chr6 123113910 123114285 -59300957 + MLT1I LTR MaLR 7 387 -22 324 341 89 8 chr6 123114989 123115112 -59300130 - L2 LINE L2 -4 3268 3136 1978 113 0 0 chr6 123115121 123115420 -59299822 + AluSg SINE Alu 25 323 0 259 313 45 45 chr6 123115549 123115661 -59299581 - MIR SINE MIR -77 131 20 23 33 0 0 chr6 123116796 123116826 -59298416 + AT_rich Low_complexity Low_complexity 1 30 0 183 129 0 0 chr6 123117040 123117071 -59298171 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 246 269 83 56 chr6 123117539 123117647 -59297595 - L2 LINE L2 0 3313 3203 2251 82 3 3 chr6 123118175 123118485 -59296757 - AluSp SINE Alu 0 310 1 315 250 0 0 chr6 123118520 123118588 -59296654 - MIR3 SINE MIR -21 187 120 23 68 0 0 chr6 123120341 123120385 -59294857 + AT_rich Low_complexity Low_complexity 1 44 0 387 285 44 39 chr6 123121682 123121868 -59293374 + MIR SINE MIR 29 225 -37 411 264 28 73 chr6 123122098 123122276 -59292966 + MIR SINE MIR 22 191 -71 913 95 17 0 chr6 123122352 123122468 -59292774 + AluSq/x SINE Alu 16 133 -180 265 238 12 0 chr6 123122840 123122920 -59292322 + L1ME2 LINE L1 5825 5905 -259 * 957 104 6 12 chr6 123122909 123123072 -59292170 + L1MB3 LINE L1 5742 5903 -280 189 0 0 0 chr6 123123072 123123093 -59292149 + (TA)n Simple_repeat Simple_repeat 1 21 0 206 118 0 0 chr6 123123093 123123127 -59292115 + (GA)n Simple_repeat Simple_repeat 1 34 0 * 273 274 10 0 chr6 123123106 123123208 -59292034 + (TA)n Simple_repeat Simple_repeat 1 103 0 371 345 20 20 chr6 123123264 123123412 -59291830 + MER5B DNA MER1_type 31 178 0 435 260 55 31 chr6 123123638 123123765 -59291477 - L2 LINE L2 -2 3311 3182 459 250 67 0 chr6 123124264 123124384 -59290858 + MIR SINE MIR 130 257 -5 2534 69 0 0 chr6 123124482 123124785 -59290457 - AluY SINE Alu -8 303 1 246 290 54 11 chr6 123125170 123125263 -59289979 - MIR3 SINE MIR -7 201 105 704 244 50 10 chr6 123125332 123125533 -59289709 - MER3 DNA MER1_type 0 209 1 1719 164 13 43 chr6 123125696 123125803 -59289439 + AluJo SINE Alu 11 120 -192 2496 68 0 0 chr6 123125803 123126099 -59289143 - AluY SINE Alu -15 296 1 1719 164 13 43 chr6 123126099 123126295 -59288947 + AluJo SINE Alu 120 305 -7 303 191 0 0 chr6 123128836 123128883 -59286359 - MIR SINE MIR -9 253 207 189 74 0 0 chr6 123129197 123129224 -59286018 + (GA)n Simple_repeat Simple_repeat 1 27 0 200 305 0 0 chr6 123129230 123129289 -59285953 + G-rich Low_complexity Low_complexity 3 61 0 555 284 118 5 chr6 123129417 123129621 -59285621 - MIR SINE MIR -25 237 11 530 217 175 0 chr6 123129785 123129928 -59285314 - MER5B DNA MER1_type 0 178 11 710 265 204 25 chr6 123130940 123131298 -59283944 + L2 LINE L2 2892 3313 0 2770 91 3 0 chr6 123131389 123131752 -59283490 + THE1B LTR MaLR 1 364 0 262 299 104 67 chr6 123133170 123133373 -59281869 - MIR SINE MIR 0 262 26 321 233 55 0 chr6 123133390 123133463 -59281779 - L2 LINE L2 0 3313 3237 1280 193 161 6 chr6 123133982 123134298 -59280944 - MLT1A1 LTR MaLR 0 365 1 201 132 75 75 chr6 123134971 123135024 -59280218 + MIR3 SINE MIR 9 61 -147 1207 248 103 15 chr6 123135231 123135698 -59279544 - MER113 DNA MER1_type? -6 515 8 626 244 182 22 chr6 123136021 123136246 -59278996 + MIR SINE MIR 2 262 0 405 0 0 0 chr6 123137084 123137129 -59278113 + (TG)n Simple_repeat Simple_repeat 2 46 0 817 232 15 46 chr6 123138342 123138545 -59276697 + MIR SINE MIR 57 251 -11 1767 231 17 45 chr6 123138733 123139271 -59275971 + MER65B LTR ERV1 1 523 -8 548 286 143 9 chr6 123139893 123140114 -59275128 + MIR SINE MIR 12 252 -10 1621 192 129 5 chr6 123141819 123142200 -59273042 + MSTA LTR MaLR 1 428 0 564 199 73 7 chr6 123142501 123142637 -59272605 + MLT1J LTR MaLR 102 246 -265 2105 116 0 0 chr6 123142827 123143103 -59272139 - AluSx SINE Alu -35 277 2 7017 52 21 6 chr6 123143315 123143560 -59271682 + L1PA8 LINE L1 4800 5040 -1132 2339 99 0 7 chr6 123143560 123143863 -59271379 + AluSq SINE Alu 1 301 -12 7017 52 21 6 chr6 123143863 123144980 -59270262 + L1PA8 LINE L1 5040 6172 0 21 36 0 0 chr6 123147006 123147034 -59268208 + AT_rich Low_complexity Low_complexity 1 28 0 1834 115 41 0 chr6 123147147 123147445 -59267797 - AluSg SINE Alu 0 309 1 333 261 33 22 chr6 123149026 123149118 -59266124 - MIR SINE MIR -75 187 95 730 191 0 0 chr6 123149601 123149716 -59265526 + FLAM_C SINE Alu 3 117 -26 435 304 93 82 chr6 123149846 123150332 -59264910 + L2 LINE L2 2819 3309 -4 369 330 17 0 chr6 123150717 123150835 -59264407 + MIR SINE MIR 48 167 -95 755 334 137 24 chr6 123151830 123152614 -59262628 + L2 LINE L2 1882 2753 -561 1685 156 25 3 chr6 123152619 123152933 -59262309 + L1MA7 LINE L1 5960 6280 -11 380 328 75 71 chr6 123152964 123153477 -59261765 + L2 LINE L2 2737 3263 -9 433 285 90 0 chr6 123153695 123153839 -59261403 - MIR SINE MIR -50 212 56 188 275 25 100 chr6 123154271 123154351 -59260891 - L3 LINE CR1 -4 1573 1500 1693 248 89 14 chr6 123154391 123154951 -59260291 + L1ME3A LINE L1 5569 6170 0 324 0 0 0 chr6 123156767 123156803 -59258439 + (TA)n Simple_repeat Simple_repeat 1 36 0 367 308 139 46 chr6 123157565 123157997 -59257245 + L2 LINE L2 2488 2959 -355 304 291 79 16 chr6 123158157 123158284 -59256958 + L2 LINE L2 3179 3313 0 286 387 7 19 chr6 123158701 123158856 -59256386 + MIR SINE MIR 1 153 -109 354 330 116 9 chr6 123159060 123159284 -59255958 + MIR SINE MIR 15 262 0 217 324 29 0 chr6 123160819 123160887 -59254355 - MIR SINE MIR -128 134 65 509 256 58 7 chr6 123160985 123161122 -59254120 + MIR SINE MIR 73 216 -46 741 148 7 30 chr6 123161128 123161263 -59253979 + FLAM_A SINE Alu 1 132 -1 1032 180 0 0 chr6 123162217 123162378 -59252864 - FRAM SINE Alu -16 160 1 919 186 118 23 chr6 123162623 123162843 -59252399 - MIR SINE MIR -9 253 13 22 0 0 0 chr6 123163316 123163338 -59251904 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 123164948 123164972 -59250270 + AT_rich Low_complexity Low_complexity 1 24 0 236 234 13 13 chr6 123165472 123165549 -59249693 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 70 0 0 chr6 123165593 123165636 -59249606 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 123166117 123166139 -59249103 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 123166154 123166177 -59249065 + AT_rich Low_complexity Low_complexity 1 23 0 264 277 19 55 chr6 123166778 123166936 -59248306 - MIR SINE MIR -13 249 50 2262 124 0 0 chr6 123168804 123169111 -59246131 + AluSx SINE Alu 1 307 -5 234 191 135 11 chr6 123169174 123169263 -59245979 + L2 LINE L2 2291 2390 -924 543 303 136 63 chr6 123169277 123169689 -59245553 + L2 LINE L2 2805 3246 -26 2249 95 14 0 chr6 123169940 123170234 -59245008 + AluSc SINE Alu 1 298 -11 198 128 154 0 chr6 123172101 123172140 -59243102 - MER5B DNA MER1_type -133 45 1 566 178 0 96 chr6 123174363 123174498 -59240744 + L2 LINE L2 3191 3312 -1 404 302 116 45 chr6 123174544 123174786 -59240456 - MIR SINE MIR -2 260 2 1841 208 53 100 chr6 123174868 123175449 -59239793 - MLT2B3 LTR ERVL 0 554 1 743 170 0 7 chr6 123175556 123175691 -59239551 - MLT1B LTR MaLR -10 380 247 680 166 10 70 chr6 123175710 123175874 -59239368 + MLT2B3 LTR ERVL 293 362 -91 589 182 103 47 chr6 123175878 123176092 -59239150 - MLT1B LTR MaLR -164 226 1 267 79 0 0 chr6 123177094 123177132 -59238110 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr6 123177397 123177425 -59237817 + AT_rich Low_complexity Low_complexity 1 28 0 350 371 19 13 chr6 123177661 123177820 -59237422 + MIR3 SINE MIR 43 202 -6 1807 200 126 35 chr6 123177991 123178376 -59236866 + MLT2B1 LTR ERVL 20 455 -65 2009 165 33 30 chr6 123178376 123178739 -59236503 + THE1B LTR MaLR 1 364 0 1807 200 126 35 chr6 123178739 123178812 -59236430 + MLT2B1 LTR ERVL 455 520 0 1763 241 0 14 chr6 123178812 123179239 -59236003 + MLT-int LTR MaLR 1 421 -1314 989 61 0 15 chr6 123179277 123179408 -59235834 - AluY SINE Alu 0 311 183 2388 237 35 103 chr6 123179408 123180416 -59234826 + MLT1A1-int LTR MaLR 432 1370 -1 1245 198 69 22 chr6 123180417 123180735 -59234507 + MLT1A1 LTR MaLR 1 333 -32 1265 157 5 0 chr6 123180735 123180952 -59234290 + Tigger1 DNA MER2_type 1 218 -2200 1191 194 27 5 chr6 123180954 123181176 -59234066 - AluJo SINE Alu 0 312 86 13139 129 21 12 chr6 123181176 123183359 -59231883 + Tigger1 DNA MER2_type 217 2418 0 254 86 0 0 chr6 123183359 123183393 -59231849 + MLT1A1 LTR MaLR 357 390 0 1715 238 243 48 chr6 123183682 123184949 -59230293 - HAL1 LINE L1 -3 2504 991 1633 282 98 18 chr6 123185087 123185758 -59229484 - HAL1 LINE L1 -1736 771 47 231 408 0 0 chr6 123185761 123185859 -59229383 + L2 LINE L2 3174 3271 -1 22 0 0 0 chr6 123187206 123187228 -59228014 + AT_rich Low_complexity Low_complexity 1 22 0 489 247 62 7 chr6 123187510 123187656 -59227586 - MIR SINE MIR -44 218 65 21 0 0 0 chr6 123187708 123187729 -59227513 + AT_rich Low_complexity Low_complexity 1 21 0 259 337 138 29 chr6 123188456 123188702 -59226540 - L2 LINE L2 -131 3141 2869 665 240 173 22 chr6 123188713 123188938 -59226304 + MIR SINE MIR 2 260 -2 4384 150 11 14 chr6 123189521 123190240 -59225002 + MER72 LTR ERV1 5 721 -1 3408 94 114 27 chr6 123190962 123191481 -59223761 + MER61E LTR ERV1 2 565 -4 219 146 0 0 chr6 123192337 123192378 -59222864 + (T)n Simple_repeat Simple_repeat 1 41 0 1882 162 15 6 chr6 123192700 123193040 -59222202 - L1PA16 LINE L1 -1 6165 5823 3151 221 11 1 chr6 123193040 123193742 -59221500 + L1PA15-16 LINE L1 1711 2419 -4430 557 204 23 8 chr6 123194652 123194784 -59220458 - MER103 DNA DNA -2 164 31 3029 165 42 59 chr6 123194794 123195163 -59220079 + MER67C LTR ERV1 1 354 -356 1996 128 13 22 chr6 123195163 123195476 -59219766 + AluSq SINE Alu 1 310 -3 3029 165 42 59 chr6 123195476 123195814 -59219428 + MER67C LTR ERV1 354 696 -14 661 258 72 21 chr6 123196053 123196247 -59218995 - MER105 DNA DNA 0 204 1 1467 266 64 14 chr6 123196298 123196719 -59218523 + L2 LINE L2 2262 2703 -611 514 255 155 25 chr6 123196724 123196884 -59218358 + L2 LINE L2 2857 3049 -264 2534 58 12 113 chr6 123196884 123197301 -59217941 - THE1C LTR MaLR 0 375 1 514 255 155 25 chr6 123197301 123197340 -59217902 + L2 LINE L2 3049 3082 -231 655 198 8 8 chr6 123197369 123197495 -59217747 + FLAM_C SINE Alu 1 126 -17 293 259 102 110 chr6 123197500 123197736 -59217506 + L2 LINE L2 3066 3299 -14 799 150 81 40 chr6 123198365 123198436 -59216806 - LTR49 LTR ERV1 0 595 528 1604 218 88 87 chr6 123198436 123199162 -59216080 + LTR8A LTR ERV1 1 727 0 799 150 81 40 chr6 123199162 123199263 -59215979 - LTR49 LTR ERV1 -67 528 416 * 1083 147 207 4 chr6 123199257 123199575 -59215667 - LTR29 LTR ERV1 -198 424 1 2089 252 31 74 chr6 123200284 123200882 -59214360 - MER21B LTR ERV1 -99 764 207 1839 133 31 80 chr6 123200882 123201234 -59214008 - MER1B DNA MER1_type -2 335 1 2089 252 31 74 chr6 123201234 123201433 -59213809 - MER21B LTR ERV1 -656 207 1 209 234 31 0 chr6 123201462 123201526 -59213716 + L2 LINE L2 3171 3236 -77 408 270 67 45 chr6 123201734 123201912 -59213330 + MIR SINE MIR 28 209 -53 271 200 45 19 chr6 123202965 123203120 -59212122 + (CTATA)n Simple_repeat Simple_repeat 4 162 0 273 250 95 26 chr6 123203600 123203716 -59211526 - MER20B DNA MER1_type -594 189 66 209 376 69 0 chr6 123203934 123204035 -59211207 + MIR SINE MIR 59 166 -96 29 0 0 0 chr6 123204510 123204539 -59210703 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 123205177 123205205 -59210037 + AT_rich Low_complexity Low_complexity 1 28 0 993 321 115 23 chr6 123206000 123206654 -59208588 - L3 LINE CR1 -177 1400 687 1699 213 84 65 chr6 123208005 123208745 -59206497 - LTR1B LTR ERV1 0 826 1 1054 170 213 4 chr6 123209405 123209682 -59205560 - L1MD3 LINE L1 -9 7986 7652 2404 69 0 3 chr6 123210254 123210560 -59204682 + AluY SINE Alu 1 305 -6 234 91 0 0 chr6 123211959 123211992 -59203250 + (A)n Simple_repeat Simple_repeat 1 33 0 229 231 0 15 chr6 123212622 123212687 -59202555 + (TA)n Simple_repeat Simple_repeat 2 65 0 802 274 93 4 chr6 123212815 123213052 -59202190 - MIR SINE MIR -3 259 2 2184 130 0 0 chr6 123213218 123213526 -59201716 - AluSx SINE Alu -2 310 3 21 57 0 0 chr6 123215284 123215319 -59199923 + AT_rich Low_complexity Low_complexity 1 35 0 591 169 0 0 chr6 123215927 123216016 -59199226 - 5S rRNA rRNA -31 90 2 429 241 26 26 chr6 123216312 123216428 -59198814 + MIR3 SINE MIR 87 202 -6 28 48 0 0 chr6 123216844 123216886 -59198356 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr6 123217124 123217147 -59198095 + AT_rich Low_complexity Low_complexity 1 23 0 423 307 40 57 chr6 123217414 123217642 -59197600 + L2 LINE L2 3089 3312 -1 243 188 0 0 chr6 123219901 123219949 -59195293 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 549 283 40 46 chr6 123219974 123220303 -59194939 - HAL1b LINE L1 -526 822 496 297 282 32 65 chr6 123220303 123220427 -59194815 - L3 LINE CR1 -123 1454 1335 369 353 47 18 chr6 123220645 123220815 -59194427 - MIR3 SINE MIR -18 190 16 277 239 15 0 chr6 123221830 123221897 -59193345 + MIR3 SINE MIR 141 208 0 404 293 25 81 chr6 123223342 123223540 -59191702 + MER5A DNA MER1_type 1 187 -2 26 0 0 0 chr6 123223729 123223755 -59191487 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr6 123225354 123225378 -59189864 + (T)n Simple_repeat Simple_repeat 1 24 0 2059 100 28 14 chr6 123225827 123226118 -59189124 - AluSg SINE Alu -15 295 1 1225 129 41 5 chr6 123226205 123226399 -59188843 + MSTA LTR MaLR 1 201 -227 1427 129 5 0 chr6 123226536 123226746 -59188496 + MSTA LTR MaLR 218 428 0 657 301 49 62 chr6 123226888 123227294 -59187948 + MLT1K LTR MaLR 171 571 -17 719 207 0 7 chr6 123227586 123227721 -59187521 - AluJo SINE Alu -178 134 1 389 317 110 73 chr6 123227728 123228273 -59186969 + L2 LINE L2 2282 2846 -468 * 459 279 0 9 chr6 123228269 123228380 -59186862 + L2 LINE L2 3203 3312 -1 31 0 0 0 chr6 123229530 123229561 -59185681 + AT_rich Low_complexity Low_complexity 1 31 0 1934 115 0 0 chr6 123230116 123230376 -59184866 + AluSx SINE Alu 47 306 -6 236 337 95 53 chr6 123232588 123232703 -59182539 + MIR3 SINE MIR 32 158 -50 523 241 77 29 chr6 123232703 123232873 -59182369 - MER5B DNA MER1_type 0 178 1 236 337 95 53 chr6 123232873 123232926 -59182316 + MIR3 SINE MIR 158 207 -1 691 188 0 0 chr6 123233711 123233839 -59181403 - L1PB4 LINE L1 -1 6155 6028 512 325 18 31 chr6 123234500 123234663 -59180579 + MER91A DNA MER1_type 36 196 0 312 27 0 0 chr6 123235229 123235266 -59179976 + (CA)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr6 123236363 123236383 -59178859 + (T)n Simple_repeat Simple_repeat 1 20 0 1083 207 86 3 chr6 123237316 123237606 -59177636 + MER33 DNA MER1_type 10 323 -1 488 276 154 78 chr6 123237743 123237843 -59177399 + MLT1H LTR MaLR 3 94 -455 2441 15 0 0 chr6 123237843 123238112 -59177130 + AluYb8 SINE Alu 44 312 -6 488 276 154 78 chr6 123238112 123238472 -59176770 + MLT1H LTR MaLR 94 498 -51 183 42 0 0 chr6 123238847 123238871 -59176371 + (TTG)n Simple_repeat Simple_repeat 1 24 0 365 291 8 15 chr6 123238889 123239023 -59176219 + MLT1K LTR MaLR 22 154 -395 482 246 91 29 chr6 123239545 123239720 -59175522 + MIR SINE MIR 6 191 -71 185 0 0 39 chr6 123243140 123243147 -59172095 + (TA)n Simple_repeat Simple_repeat 2 8 -18 2249 116 0 3 chr6 123243147 123243450 -59171792 + AluSx SINE Alu 1 302 -10 185 0 0 39 chr6 123243450 123243468 -59171774 + (TA)n Simple_repeat Simple_repeat 8 26 0 36 0 0 0 chr6 123243710 123243746 -59171496 + AT_rich Low_complexity Low_complexity 1 36 0 520 246 8 22 chr6 123243833 123243967 -59171275 - L2 LINE L2 -3 3310 3179 806 315 53 7 chr6 123244810 123245112 -59170130 + LTR16A LTR ERVL 120 435 -15 2570 54 0 0 chr6 123245529 123245827 -59169415 + AluY SINE Alu 1 298 -13 600 303 129 24 chr6 123246764 123247176 -59168066 + MLT1K LTR MaLR 104 558 -30 262 236 69 14 chr6 123247202 123247274 -59167968 + L2 LINE L2 3197 3272 0 200 237 17 34 chr6 123247313 123247372 -59167870 + MIR SINE MIR 95 152 -56 716 145 129 79 chr6 123248046 123248144 -59167098 - Charlie5 DNA MER1_type 0 2585 2493 1366 174 59 52 chr6 123248144 123248432 -59166810 + AluJo SINE Alu 1 290 -22 716 145 129 79 chr6 123248432 123248574 -59166668 - Charlie5 DNA MER1_type -92 2493 2333 245 174 29 58 chr6 123249254 123249323 -59165919 + GA-rich Low_complexity Low_complexity 5 71 0 2011 139 32 61 chr6 123249774 123250149 -59165093 - THE1B LTR MaLR 0 364 1 10772 89 23 43 chr6 123250149 123251336 -59163906 - THE1B-int LTR MaLR 0 1580 433 2460 78 0 0 chr6 123251336 123251643 -59163599 + AluY SINE Alu 1 307 -4 10772 89 23 43 chr6 123251643 123252068 -59163174 - THE1B-int LTR MaLR -1147 433 1 2159 137 30 30 chr6 123252068 123252432 -59162810 - THE1B LTR MaLR 0 364 1 783 255 62 14 chr6 123252535 123252743 -59162499 - MIR SINE MIR -11 251 34 1604 187 36 13 chr6 123252952 123253136 -59162106 - AluJo SINE Alu 0 312 117 189 94 0 0 chr6 123253136 123253168 -59162074 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 1604 187 36 13 chr6 123253168 123253288 -59161954 - AluJo SINE Alu -195 117 1 25 31 0 0 chr6 123254559 123254591 -59160651 + AT_rich Low_complexity Low_complexity 1 32 0 199 319 112 9 chr6 123254637 123254753 -59160489 + L2 LINE L2 3180 3307 -6 22 80 0 0 chr6 123255123 123255173 -59160069 + AT_rich Low_complexity Low_complexity 1 50 0 241 304 43 11 chr6 123255942 123256034 -59159208 - L2 LINE L2 -282 2990 2896 188 302 16 16 chr6 123256171 123256234 -59159008 - L2 LINE L2 -621 2693 2631 196 274 39 0 chr6 123257119 123257170 -59158072 - L2 LINE L2 -73 3199 3147 2367 94 0 0 chr6 123257495 123257794 -59157448 + AluY SINE Alu 1 299 -12 25 83 0 0 chr6 123257877 123257937 -59157305 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr6 123258412 123258433 -59156809 + AT_rich Low_complexity Low_complexity 1 21 0 313 318 115 22 chr6 123259176 123259629 -59155613 - L1ME4a LINE L1 -63 6058 5564 309 264 94 19 chr6 123259719 123259878 -59155364 - L1ME4a LINE L1 -2370 5438 5268 736 336 133 29 chr6 123259882 123260112 -59155130 - L2 LINE L2 -1012 2302 2097 1975 133 7 17 chr6 123260112 123260412 -59154830 - AluJo SINE Alu -15 297 1 736 336 133 29 chr6 123260412 123260865 -59154377 - L2 LINE L2 -1217 2097 1548 * 885 345 97 8 chr6 123260864 123261371 -59153871 + L2 LINE L2 1867 2418 -896 267 183 77 58 chr6 123261398 123261502 -59153740 - L1MC/D LINE L1 -2033 5775 5670 532 295 82 0 chr6 123264339 123264522 -59150720 - MIR SINE MIR 0 262 65 449 234 36 0 chr6 123264996 123265107 -59150135 - MIR3 SINE MIR -13 195 81 369 302 24 8 chr6 123265861 123265987 -59149255 + MIR3 SINE MIR 81 208 0 463 332 106 17 chr6 123266217 123266452 -59148790 - L3 LINE CR1 -6 1571 1316 22 56 0 0 chr6 123266695 123266731 -59148511 + AT_rich Low_complexity Low_complexity 1 36 0 618 247 36 34 chr6 123267234 123267543 -59147699 - L1ME LINE L1 -5277 1670 1320 5291 261 141 12 chr6 123267979 123270005 -59145237 - L2 LINE L2 -279 3034 755 1405 226 43 6 chr6 123270807 123271135 -59144107 - MER58B DNA MER1_type -1 340 1 255 0 0 0 chr6 123272728 123272759 -59142483 + MADE1 DNA Mariner 50 80 0 398 343 50 93 chr6 123275109 123275430 -59139812 - L2 LINE L2 -2 3270 2964 201 196 22 0 chr6 123277368 123277414 -59137828 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 34 0 0 0 chr6 123278405 123278439 -59136803 + AT_rich Low_complexity Low_complexity 1 34 0 24 85 0 0 chr6 123278740 123278799 -59136443 + AT_rich Low_complexity Low_complexity 1 59 0 21 36 0 0 chr6 123280134 123280162 -59135080 + AT_rich Low_complexity Low_complexity 1 28 0 1896 195 48 52 chr6 123280343 123280501 -59134741 + L1PA10 LINE L1 5628 5785 -383 1755 96 4 4 chr6 123280501 123280748 -59134494 + L1PA13 LINE L1 5909 6159 -4 1896 195 48 52 chr6 123280748 123281132 -59134110 + L1PA10 LINE L1 5785 6168 0 263 276 112 13 chr6 123281123 123281275 -59133967 + L1ME4a LINE L1 5767 5933 -188 * 313 273 103 30 chr6 123281280 123281445 -59133797 + L1ME4a LINE L1 5944 6120 -1 1159 170 40 0 chr6 123281551 123281775 -59133467 + L1MB1 LINE L1 5935 6167 -1 301 243 29 0 chr6 123282380 123282483 -59132759 - L1ME4a LINE L1 -26 6095 5990 695 219 88 70 chr6 123282513 123282741 -59132501 - MIR SINE MIR -17 245 14 325 240 13 13 chr6 123283803 123283878 -59131364 + MLT1H1 LTR MaLR 152 226 -329 252 186 0 0 chr6 123284305 123284348 -59130894 + MIR SINE MIR 211 253 -9 343 323 153 18 chr6 123286786 123287068 -59128174 + L3 LINE CR1 361 680 -897 203 296 74 25 chr6 123287129 123287210 -59128032 + MIR SINE MIR 112 196 -66 196 342 111 0 chr6 123287259 123287376 -59127866 + L3 LINE CR1 689 818 -759 1366 204 105 43 chr6 123287465 123287838 -59127404 - MSTD LTR MaLR 0 396 1 325 284 106 102 chr6 123287897 123287988 -59127254 - L2 LINE L2 -39 3233 3144 1395 181 100 25 chr6 123287988 123288308 -59126934 + MER2 DNA MER2_type 1 344 0 325 284 106 102 chr6 123288308 123288867 -59126375 - L2 LINE L2 -128 3144 2574 244 306 240 23 chr6 123288895 123289153 -59126089 - L2 LINE L2 -1050 2264 1951 337 360 22 22 chr6 123289566 123289705 -59125537 + L3 LINE CR1 1426 1564 -13 2146 48 45 0 chr6 123289732 123290000 -59125242 - AluY SINE Alu -8 303 24 307 283 10 10 chr6 123292366 123292465 -59122777 - MIR3 SINE MIR -48 160 62 237 366 14 0 chr6 123292551 123292622 -59122620 - L2 LINE L2 -79 3193 3122 251 374 75 0 chr6 123292922 123293029 -59122213 - L2 LINE L2 -19 3253 3139 886 253 49 13 chr6 123293685 123293910 -59121332 - MIR SINE MIR -10 252 20 7670 85 19 3 chr6 123293916 123294970 -59120272 + MER11C LTR ERVK 1 1071 0 4742 167 28 26 chr6 123295398 123296492 -59118750 + L1MB8 LINE L1 5088 6178 0 21 0 0 0 chr6 123298451 123298472 -59116770 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 123299184 123299207 -59116035 + AT_rich Low_complexity Low_complexity 1 23 0 5480 170 110 40 chr6 123299854 123301208 -59114034 - Charlie1a DNA MER1_type 0 1455 7 317 154 0 0 chr6 123301531 123301583 -59113659 - L1MC4 LINE L1 -1339 6703 6652 2430 62 0 7 chr6 123303594 123303901 -59111341 + AluY SINE Alu 1 305 -6 379 306 75 17 chr6 123304298 123304471 -59110771 - MER5A DNA MER1_type 0 189 7 1875 132 0 77 chr6 123304721 123305048 -59110194 + AluSx SINE Alu 1 302 -10 342 211 0 14 chr6 123305917 123305988 -59109254 - Tigger5 DNA MER2_type -1 2322 2253 356 209 0 15 chr6 123305989 123306056 -59109186 - Tigger5 DNA MER2_type -2257 66 1 181 57 57 0 chr6 123306416 123306451 -59108791 + A-rich Low_complexity Low_complexity 6 42 0 2189 125 7 0 chr6 123306830 123307133 -59108109 - AluSx SINE Alu -7 305 1 2650 198 79 72 chr6 123307574 123308038 -59107204 + L1ME2 LINE L1 4902 5361 -803 1818 154 26 7 chr6 123308038 123308344 -59106898 + AluJb SINE Alu 1 312 0 2650 198 79 72 chr6 123308344 123309105 -59106137 + L1ME2 LINE L1 5361 6155 -9 764 220 12 52 chr6 123309159 123309214 -59106028 - MER5A DNA MER1_type -22 167 111 1924 145 0 7 chr6 123309214 123309518 -59105724 - AluSx SINE Alu -10 302 1 764 220 12 52 chr6 123309518 123309635 -59105607 - MER5A DNA MER1_type -78 111 2 205 368 0 53 chr6 123312338 123312452 -59102790 + MIR SINE MIR 33 140 -122 23 54 0 0 chr6 123312810 123312847 -59102395 + AT_rich Low_complexity Low_complexity 1 37 0 315 278 73 99 chr6 123312883 123313156 -59102086 - L2 LINE L2 0 3313 3048 418 289 227 0 chr6 123313954 123314148 -59101094 + MIR SINE MIR 8 245 -17 216 0 0 0 chr6 123314298 123314322 -59100920 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 577 279 65 4 chr6 123314905 123315134 -59100108 - L1MC4a LINE L1 -1919 5889 5647 180 77 0 0 chr6 123315304 123315330 -59099912 + (TAA)n Simple_repeat Simple_repeat 2 27 0 362 303 97 0 chr6 123315400 123315565 -59099677 - MIR SINE MIR -19 243 63 360 245 53 21 chr6 123316090 123316184 -59099058 + L2 LINE L2 3188 3284 -29 198 0 0 0 chr6 123316184 123316206 -59099036 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 236 30 30 0 chr6 123316205 123316238 -59099004 + (TA)n Simple_repeat Simple_repeat 1 34 0 538 218 0 0 chr6 123316239 123316340 -59098902 - FLAM_C SINE Alu -28 115 15 874 279 141 12 chr6 123318113 123318446 -59096796 + MLT1I LTR MaLR 21 396 -13 426 321 71 54 chr6 123318748 123318988 -59096254 + MIR SINE MIR 1 244 -18 216 0 0 0 chr6 123320948 123320972 -59094270 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 542 215 66 16 chr6 123321167 123321288 -59093954 - L2 LINE L2 -5 3308 3182 204 243 100 43 chr6 123321375 123321405 -59093837 + L2 LINE L2 3239 3266 -47 1766 153 22 4 chr6 123321405 123321702 -59093540 + AluSx SINE Alu 3 304 0 204 243 100 43 chr6 123321702 123321740 -59093502 + L2 LINE L2 3266 3312 -1 24 0 0 0 chr6 123323082 123323106 -59092136 + AT_rich Low_complexity Low_complexity 1 24 0 503 116 0 12 chr6 123323483 123323569 -59091673 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 226 254 17 0 chr6 123326233 123326292 -59088950 - MER94 DNA DNA -51 83 24 23 0 0 0 chr6 123326707 123326730 -59088512 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr6 123327260 123327306 -59087936 + AT_rich Low_complexity Low_complexity 1 46 0 191 302 19 0 chr6 123327721 123327774 -59087468 + L2 LINE L2 3244 3297 -16 282 288 0 27 chr6 123327835 123327908 -59087334 - L2 LINE L2 -2 3270 3200 211 348 183 13 chr6 123328261 123328491 -59086751 - L2 LINE L2 -508 2806 2538 692 87 0 39 chr6 123328934 123329038 -59086204 - AluY SINE Alu -14 297 198 219 284 62 25 chr6 123329397 123329478 -59085764 - L2 LINE L2 -50 3222 3139 1860 195 30 0 chr6 123329764 123330102 -59085140 + MER7A DNA MER2_type 1 346 0 412 309 194 10 chr6 123330375 123330576 -59084666 + MIR SINE MIR 7 244 -18 2377 80 3 10 chr6 123330940 123331242 -59084000 - AluSc SINE Alu -9 300 1 1839 142 7 0 chr6 123331617 123331919 -59083323 + AluSx SINE Alu 1 304 0 305 280 0 52 chr6 123331933 123332030 -59083212 - MIR SINE MIR -83 125 33 330 345 9 0 chr6 123333101 123333217 -59082025 + MIR SINE MIR 41 157 -105 332 202 174 37 chr6 123333245 123333354 -59081888 + MIR SINE MIR 113 236 -26 22 0 0 0 chr6 123333373 123333395 -59081847 + AT_rich Low_complexity Low_complexity 1 22 0 351 206 16 8 chr6 123333530 123333656 -59081586 + (TA)n Simple_repeat Simple_repeat 2 128 0 197 200 53 47 chr6 123335292 123335356 -59079886 + L2 LINE L2 3207 3312 -1 623 177 15 8 chr6 123336426 123336556 -59078686 + GA-rich Low_complexity Low_complexity 1 131 0 5743 113 4 1 chr6 123336657 123337499 -59077743 - THE1B-int LTR MaLR -341 1239 396 943 84 7 0 chr6 123337499 123337642 -59077600 - THE1B-int LTR MaLR -1436 144 1 2120 134 45 31 chr6 123337642 123338001 -59077241 - THE1B LTR MaLR 0 364 1 613 221 32 16 chr6 123338001 123338191 -59077051 - L1MC3 LINE L1 -105 7680 7488 * 1657 215 88 34 chr6 123338170 123338493 -59076749 - L1MC3 LINE L1 -1106 6679 6318 1538 180 49 14 chr6 123338493 123338777 -59076465 + AluJo SINE Alu 3 296 -16 1657 215 88 34 chr6 123338777 123338951 -59076291 - L1MC3 LINE L1 -1467 6318 6155 281 208 69 14 chr6 123338962 123339034 -59076208 - AluJ/FRAM SINE Alu -2 300 225 2175 40 0 0 chr6 123339136 123339435 -59075807 - L1P LINE L1 -2793 3353 3055 7548 22 0 0 chr6 123339435 123341042 -59074200 + L1HS LINE L1 4549 6155 0 23 0 0 0 chr6 123341055 123341078 -59074164 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr6 123341091 123341115 -59074127 + (A)n Simple_repeat Simple_repeat 1 24 0 558 174 10 0 chr6 123341634 123341732 -59073510 + L1M2 LINE L1 5628 5726 -565 210 185 0 56 chr6 123341932 123341986 -59073256 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 471 118 0 0 chr6 123342228 123342304 -59072938 + (GA)n Simple_repeat Simple_repeat 2 77 0 316 274 207 15 chr6 123343219 123343354 -59071888 - L1M2 LINE L1 -6148 701 541 252 0 0 0 chr6 123343459 123343487 -59071755 + (CGG)n Simple_repeat Simple_repeat 2 29 0 220 241 11 35 chr6 123344077 123344164 -59071078 + C-rich Low_complexity Low_complexity 4 88 0 1634 180 0 34 chr6 123346721 123347015 -59068227 + AluJo SINE Alu 13 296 -16 193 293 66 47 chr6 123347159 123347197 -59068045 - L2 LINE L2 -4 3309 3273 1715 168 13 20 chr6 123347197 123347501 -59067741 + AluJo SINE Alu 3 304 -8 193 293 66 47 chr6 123347501 123347568 -59067674 - L2 LINE L2 -40 3273 3202 777 133 43 62 chr6 123347859 123348068 -59067174 - MER33 DNA MER1_type -1 323 119 1011 172 6 0 chr6 123348068 123348242 -59067000 + MLT1E2 LTR MaLR 1 175 -451 214 146 45 45 chr6 123348753 123348842 -59066400 + (TA)n Simple_repeat Simple_repeat 2 90 0 722 149 98 52 chr6 123349237 123349351 -59065891 + MER2 DNA MER2_type 2 130 -215 2318 106 0 3 chr6 123349351 123349654 -59065588 - AluSp SINE Alu -11 302 1 722 149 98 52 chr6 123349654 123349733 -59065509 + MER2 DNA MER2_type 130 204 -141 37 39 0 0 chr6 123349734 123349785 -59065457 + AT_rich Low_complexity Low_complexity 1 51 0 2494 54 3 0 chr6 123349995 123350289 -59064953 + AluY SINE Alu 1 295 -16 1754 227 23 38 chr6 123351799 123352271 -59062971 + MLT1E2 LTR MaLR 162 626 0 639 171 8 17 chr6 123352276 123352393 -59062849 - MER33 DNA MER1_type -207 117 2 1483 156 62 13 chr6 123353320 123353628 -59061614 + MER33 DNA MER1_type 2 324 0 226 274 0 16 chr6 123353638 123353700 -59061542 - MER5A DNA MER1_type -1 188 128 434 313 24 24 chr6 123353752 123353918 -59061324 + MER5B DNA MER1_type 13 178 0 247 175 0 0 chr6 123354255 123354295 -59060947 - MER5A DNA MER1_type -2 187 148 204 214 0 0 chr6 123354567 123354623 -59060619 + A-rich Low_complexity Low_complexity 4 59 0 279 237 136 8 chr6 123354979 123355097 -59060145 + MER103 DNA DNA 34 166 0 228 301 30 83 chr6 123355558 123355617 -59059625 + MLT1J LTR MaLR 3 64 -447 769 131 23 0 chr6 123355617 123355747 -59059495 + MER94 DNA DNA 2 134 0 228 301 30 83 chr6 123355747 123355820 -59059422 + MLT1J LTR MaLR 64 128 -383 452 297 96 44 chr6 123355984 123356233 -59059009 + MLT1J LTR MaLR 238 499 -12 1332 180 42 0 chr6 123356286 123356575 -59058667 - MER33 DNA MER1_type -22 302 2 670 265 30 6 chr6 123358578 123358744 -59056498 + MIR SINE MIR 20 189 -73 230 314 83 33 chr6 123358829 123358950 -59056292 - L2 LINE L2 -9 3263 3137 219 329 32 52 chr6 123359430 123359585 -59055657 - MIR SINE MIR -71 191 40 206 231 22 55 chr6 123359804 123359895 -59055347 + GA-rich Low_complexity Low_complexity 3 90 0 197 348 152 0 chr6 123360466 123360650 -59054592 + MIR SINE MIR 33 244 -18 426 259 253 0 chr6 123361704 123361878 -59053364 + MIR SINE MIR 28 245 -17 321 291 25 63 chr6 123362107 123362265 -59052977 + L2 LINE L2 3162 3313 0 280 265 71 20 chr6 123362533 123362631 -59052611 - MIR SINE MIR -70 192 90 206 61 0 30 chr6 123362834 123362867 -59052375 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 1987 159 0 9 chr6 123362869 123362904 -59052338 - AluSx SINE Alu 0 312 278 1035 99 17 6 chr6 123362904 123363076 -59052166 + (TTCC)n Simple_repeat Simple_repeat 2 175 0 1987 159 0 9 chr6 123363076 123363355 -59051887 - AluSx SINE Alu -34 278 1 24 0 0 0 chr6 123364176 123364200 -59051042 + AT_rich Low_complexity Low_complexity 1 24 0 1712 181 0 26 chr6 123366556 123366859 -59048383 - AluJb SINE Alu -13 299 5 23 54 0 0 chr6 123366872 123366909 -59048333 + AT_rich Low_complexity Low_complexity 1 37 0 232 227 23 0 chr6 123367415 123367459 -59047783 - L2 LINE L2 -27 3245 3201 225 94 0 0 chr6 123367481 123367513 -59047729 + (T)n Simple_repeat Simple_repeat 1 32 0 255 61 0 0 chr6 123368141 123368174 -59047068 + (TG)n Simple_repeat Simple_repeat 2 34 0 741 136 45 0 chr6 123369886 123370018 -59045224 + L1MA5A LINE L1 6148 6285 -12 24 0 0 0 chr6 123370946 123370970 -59044272 + AT_rich Low_complexity Low_complexity 1 24 0 276 346 9 19 chr6 123371079 123371186 -59044056 + MIR SINE MIR 19 124 -84 275 160 58 43 chr6 123371237 123371331 -59043911 - MLT1I LTR MaLR -2 422 330 1566 175 119 26 chr6 123371578 123372095 -59043147 - MLT2A2 LTR ERVL 0 554 1 343 347 41 18 chr6 123373403 123373622 -59041620 + L2 LINE L2 1109 1332 -1982 337 348 71 23 chr6 123373678 123373757 -59041485 - L2 LINE L2 -1305 2009 1935 454 128 0 0 chr6 123373757 123373835 -59041407 - MADE1 DNA Mariner 0 80 3 337 348 71 23 chr6 123373835 123374106 -59041136 - L2 LINE L2 -1379 1935 1642 594 221 260 16 chr6 123374271 123374529 -59040713 - MER5C DNA MER1_type -3 321 1 213 368 32 24 chr6 123374529 123374651 -59040591 - L2 LINE L2 -908 2406 2284 240 200 0 0 chr6 123374872 123374922 -59040320 + (CATA)n Simple_repeat Simple_repeat 3 52 0 329 185 0 76 chr6 123374924 123375016 -59040226 + L1MC4 LINE L1 6615 6699 -1343 234 207 0 0 chr6 123375020 123375078 -59040164 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 648 224 62 52 chr6 123375415 123375607 -59039635 + MIR SINE MIR 2 195 -67 453 304 147 0 chr6 123375876 123376080 -59039162 + MIR SINE MIR 20 253 -9 1869 178 3 0 chr6 123376149 123376447 -59038795 - AluJb SINE Alu -13 299 1 22 0 0 0 chr6 123378405 123378427 -59036815 + AT_rich Low_complexity Low_complexity 1 22 0 1637 189 0 21 chr6 123378427 123378718 -59036524 - AluJo SINE Alu -27 285 1 1153 315 79 69 chr6 123378847 123379962 -59035280 + L2 LINE L2 2130 3223 -49 21 0 0 0 chr6 123380605 123380626 -59034616 + AT_rich Low_complexity Low_complexity 1 21 0 534 167 74 43 chr6 123381213 123381378 -59033864 - MLT1A1 LTR MaLR 0 374 204 1375 109 0 63 chr6 123381405 123381626 -59033616 - AluSg/x SINE Alu -15 297 91 763 184 20 7 chr6 123381629 123381781 -59033461 - MLT1A1 LTR MaLR -211 154 1 293 320 131 20 chr6 123381794 123381947 -59033295 - MIR3 SINE MIR -21 187 18 2200 120 10 0 chr6 123382494 123382802 -59032440 - AluSq SINE Alu 0 313 3 282 297 0 0 chr6 123382961 123383035 -59032207 - MIR3 SINE MIR -15 193 120 210 118 0 0 chr6 123383313 123383347 -59031895 + (TG)n Simple_repeat Simple_repeat 2 35 0 183 129 0 0 chr6 123383425 123383456 -59031786 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 70 0 0 chr6 123384659 123384702 -59030540 + AT_rich Low_complexity Low_complexity 1 43 0 2135 126 10 3 chr6 123385048 123385358 -59029884 + AluSx SINE Alu 1 312 0 447 208 20 0 chr6 123385414 123385515 -59029727 - MER58 DNA MER1_type 0 2420 2318 307 200 15 0 chr6 123385529 123385594 -59029648 - MER58 DNA MER1_type -244 97 32 21 36 0 0 chr6 123385683 123385711 -59029531 + AT_rich Low_complexity Low_complexity 1 28 0 206 344 21 32 chr6 123387407 123387500 -59027742 - L3b LINE CR1 -66 1517 1426 248 185 37 0 chr6 123387535 123387589 -59027653 - LTR16A LTR ERVL -1 449 394 204 185 31 15 chr6 123387597 123387662 -59027580 + GA-rich Low_complexity Low_complexity 5 70 0 1236 224 49 14 chr6 123387747 123388096 -59027146 + MLT1A1 LTR MaLR 5 365 0 443 273 87 25 chr6 123388283 123388444 -59026798 - LTR16A LTR ERVL -259 191 21 205 306 0 0 chr6 123390764 123390849 -59024393 + A-rich Low_complexity Low_complexity 1 85 0 1943 220 23 7 chr6 123391170 123391607 -59023635 + MLT1C LTR MaLR 1 444 -23 1815 180 3 6 chr6 123392791 123393102 -59022140 + AluJo SINE Alu 3 312 0 1629 124 131 0 chr6 123393512 123393779 -59021463 + AluSx SINE Alu 1 302 0 1412 180 56 39 chr6 123393936 123394292 -59020950 - L1MA6 LINE L1 0 6300 5939 629 275 33 11 chr6 123395261 123395443 -59019799 + L2 LINE L2 2378 2563 -751 474 206 83 134 chr6 123395432 123395709 -59019533 + L2 LINE L2 3051 3313 0 * 24 32 0 0 chr6 123395842 123395873 -59019369 + AT_rich Low_complexity Low_complexity 1 31 0 10120 157 38 9 chr6 123396524 123397925 -59017317 - Ricksha_c DNA DNA -1216 2038 577 1872 115 0 8 chr6 123397925 123398210 -59017032 + AluSx SINE Alu 35 317 0 10120 157 38 9 chr6 123398210 123398495 -59016747 - Ricksha_c DNA DNA -2677 577 302 1476 116 49 22 chr6 123398495 123398719 -59016523 - MER30 DNA MER1_type 0 230 1 818 166 26 28 chr6 123398719 123398921 -59016321 - Ricksha DNA DNA -1927 119 1 207 0 0 0 chr6 123399550 123399573 -59015669 + (T)n Simple_repeat Simple_repeat 1 23 0 993 57 29 0 chr6 123399791 123399931 -59015311 + L1PA4 LINE L1 6011 6154 -1 269 148 0 19 chr6 123400136 123400190 -59015052 + (TTCTCC)n Simple_repeat Simple_repeat 5 57 0 22 0 0 0 chr6 123402109 123402131 -59013111 + AT_rich Low_complexity Low_complexity 1 22 0 1985 115 4 0 chr6 123402388 123402704 -59012538 + AluSc SINE Alu 1 317 0 511 268 49 18 chr6 123402920 123403084 -59012158 + MER69A DNA AcHobo 8 176 -1 25 0 0 0 chr6 123403338 123403363 -59011879 + AT_rich Low_complexity Low_complexity 1 25 0 638 290 103 9 chr6 123406210 123406434 -59008808 + MIR SINE MIR 6 250 -12 22 56 0 0 chr6 123407628 123407664 -59007578 + AT_rich Low_complexity Low_complexity 1 36 0 2460 97 65 3 chr6 123407664 123408047 -59007195 - L1PB1 LINE L1 0 6151 5745 22 0 0 0 chr6 123409559 123409581 -59005661 + AT_rich Low_complexity Low_complexity 1 22 0 2576 234 65 14 chr6 123409581 123410514 -59004728 - L1ME1 LINE L1 -18 6148 5160 183 250 0 0 chr6 123411575 123411619 -59003623 + L3 LINE CR1 1528 1571 -6 1542 193 20 27 chr6 123412459 123412754 -59002488 - AluJo SINE Alu -14 298 6 335 252 84 45 chr6 123413278 123413433 -59001809 + L1MC3 LINE L1 5985 6145 -1640 3192 234 42 65 chr6 123413440 123414575 -59000667 + L1MC3 LINE L1 6259 7367 -418 931 211 157 47 chr6 123414575 123414874 -59000368 + MLT2C1 LTR ERVL 1 332 -65 1164 251 68 14 chr6 123414938 123415304 -58999938 + L1MD3 LINE L1 7605 7990 -5 1411 216 0 0 chr6 123415319 123415583 -58999659 - AluJb SINE Alu -13 299 36 260 182 61 0 chr6 123415629 123415695 -58999547 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 569 163 13 131 chr6 123416141 123416294 -58998948 + MER110A LTR ERV1 62 196 -272 227 183 127 0 chr6 123416347 123416418 -58998824 + L1MC5 LINE L1 7609 7688 -273 908 221 57 53 chr6 123416418 123416681 -58998561 + MER110A LTR ERV1 205 468 0 958 177 206 8 chr6 123416940 123417183 -58998059 + AluSg SINE Alu 2 292 -8 24 77 0 0 chr6 123417437 123417489 -58997753 + AT_rich Low_complexity Low_complexity 1 52 0 470 307 86 20 chr6 123417842 123418086 -58997156 - L2 LINE L2 -655 2659 2400 275 430 8 0 chr6 123418146 123418267 -58996975 - L2 LINE L2 0 3272 3151 223 149 64 21 chr6 123418309 123418356 -58996886 - MER5A DNA MER1_type -26 163 115 296 314 98 34 chr6 123418500 123418736 -58996506 - L2 LINE L2 -1212 2102 1852 349 313 36 0 chr6 123419053 123419165 -58996077 + L2 LINE L2 3157 3272 0 387 0 0 0 chr6 123419794 123419837 -58995405 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 842 104 9 0 chr6 123419837 123419952 -58995290 - AluJb SINE Alu -191 121 6 209 274 0 81 chr6 123420115 123420177 -58995065 - MER91 DNA MER1_type -1 195 139 194 297 176 16 chr6 123421830 123422012 -58993230 - L2 LINE L2 0 3313 3103 497 225 27 0 chr6 123423037 123423148 -58992094 - MER81 DNA DNA 0 114 1 246 318 0 0 chr6 123423148 123423211 -58992031 + L2 LINE L2 3250 3312 -1 276 257 0 69 chr6 123423237 123423338 -58991904 + MIR SINE MIR 104 197 -65 464 19 0 0 chr6 123423341 123423394 -58991848 - LTR7 LTR ERV1 -2 448 396 464 19 0 0 chr6 123423409 123423462 -58991780 - LTR7 LTR ERV1 -2 448 396 3473 55 0 7 chr6 123423477 123423928 -58991314 - LTR7 LTR ERV1 -2 448 1 2563 74 45 13 chr6 123423928 123424308 -58990934 - HERVH LTR ERV1 0 7713 7322 1343 119 20 0 chr6 123424306 123424507 -58990735 - HERVH LTR ERV1 -1894 5819 5615 * 207 0 0 0 chr6 123424507 123424530 -58990712 + (T)n Simple_repeat Simple_repeat 1 23 0 4266 140 8 1 chr6 123424547 123425205 -58990037 - HERVH LTR ERV1 -2564 5149 4488 3335 111 0 4 chr6 123425207 123425703 -58989539 - HERVH LTR ERV1 -3720 3993 3500 * 16298 99 108 73 chr6 123425702 123428883 -58986359 - HERVH LTR ERV1 -4423 3290 1 3408 67 0 7 chr6 123428885 123429336 -58985906 - LTR7 LTR ERV1 -2 448 1 278 268 0 0 chr6 123429899 123429955 -58985287 - MIR3 SINE MIR -18 190 135 239 211 0 28 chr6 123430593 123430664 -58984578 + (TA)n Simple_repeat Simple_repeat 2 70 0 264 365 52 0 chr6 123431098 123431194 -58984048 + MIR SINE MIR 48 148 -114 27 29 0 0 chr6 123431195 123431229 -58984013 + AT_rich Low_complexity Low_complexity 1 34 0 2186 143 75 39 chr6 123431642 123432081 -58983161 + MSTB2 LTR MaLR 3 457 0 12157 18 16 9 chr6 123434198 123435381 -58979861 - L1PA4 LINE L1 -3 6152 4950 2496 71 0 6 chr6 123435381 123435692 -58979550 - AluY SINE Alu -2 309 1 12157 18 16 9 chr6 123435692 123436732 -58978510 - L1PA4 LINE L1 -1205 4950 3918 893 289 40 0 chr6 123437146 123437374 -58977868 + MIR SINE MIR 23 259 -3 586 241 82 6 chr6 123437456 123437573 -58977669 + MIR SINE MIR 78 213 -49 527 62 41 0 chr6 123437573 123437670 -58977572 + (TA)n Simple_repeat Simple_repeat 2 102 0 586 241 82 6 chr6 123437670 123437722 -58977520 + MIR SINE MIR 213 260 -2 22 0 0 0 chr6 123438903 123438925 -58976317 + AT_rich Low_complexity Low_complexity 1 22 0 432 250 25 82 chr6 123439037 123439171 -58976071 + MER5A DNA MER1_type 2 142 -47 480 77 0 0 chr6 123439171 123439236 -58976006 + (TATG)n Simple_repeat Simple_repeat 2 66 0 2141 90 22 0 chr6 123439236 123439513 -58975729 - AluY SINE Alu -28 283 1 432 250 25 82 chr6 123439513 123439573 -58975669 + MER5A DNA MER1_type 140 186 -3 329 263 0 13 chr6 123439657 123439733 -58975509 + MER5B DNA MER1_type 1 75 -103 29 28 0 0 chr6 123441270 123441306 -58973936 + AT_rich Low_complexity Low_complexity 1 36 0 1964 140 14 0 chr6 123441306 123441592 -58973650 - AluSx SINE Alu -22 290 1 31 68 0 0 chr6 123442873 123442932 -58972310 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr6 123443011 123443032 -58972210 + AT_rich Low_complexity Low_complexity 1 21 0 182 312 158 55 chr6 123443480 123443733 -58971509 - L2 LINE L2 -98 3215 2937 314 350 39 0 chr6 123443768 123443871 -58971371 - L2 LINE L2 -8 3264 3158 654 285 62 21 chr6 123444098 123444340 -58970902 - MLT1K LTR MaLR 0 588 337 189 300 0 33 chr6 123444659 123444719 -58970523 + MIR SINE MIR 77 134 -74 1570 100 195 0 chr6 123444895 123445146 -58970096 + AluSp SINE Alu 1 300 -3 1232 284 19 6 chr6 123446251 123446617 -58968625 - LTR16B LTR ERVL -93 371 1 219 69 0 0 chr6 123447460 123447489 -58967753 + (TG)n Simple_repeat Simple_repeat 2 30 0 34 24 0 0 chr6 123448473 123448514 -58966728 + AT_rich Low_complexity Low_complexity 1 41 0 3084 153 41 18 chr6 123448550 123448690 -58966552 - L1MC1 LINE L1 -22 6311 6176 1799 162 55 27 chr6 123448690 123449055 -58966187 - THE1C LTR MaLR 0 375 1 3084 153 41 18 chr6 123449055 123449476 -58965766 - L1MC1 LINE L1 -157 6176 5737 28 99 0 0 chr6 123450168 123450259 -58964983 + AT_rich Low_complexity Low_complexity 1 91 0 609 195 24 0 chr6 123450479 123450602 -58964640 + MER94 DNA DNA 1 126 -8 236 352 11 11 chr6 123452822 123452910 -58962332 - L2 LINE L2 -7 3265 3178 276 336 22 37 chr6 123452992 123453126 -58962116 - L2 LINE L2 -199 3073 2942 * 316 356 23 0 chr6 123453111 123453243 -58961999 - L2 LINE L2 -584 2730 2596 352 285 39 63 chr6 123453634 123453841 -58961401 + MIR SINE MIR 7 208 -54 821 270 36 0 chr6 123456477 123456673 -58958569 - MIR SINE MIR -58 204 2 239 250 38 12 chr6 123456675 123456755 -58958487 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 263 344 39 16 chr6 123456847 123456975 -58958267 + MLT2E LTR ERVL 32 162 -466 196 375 0 14 chr6 123457286 123457358 -58957884 + MIR SINE MIR 1 71 -191 766 291 36 0 chr6 123457867 123458063 -58957179 - MIR SINE MIR -58 204 2 239 250 38 12 chr6 123458065 123458145 -58957097 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 479 264 30 121 chr6 123458677 123458942 -58956300 + MIR SINE MIR 1 241 -21 307 281 133 61 chr6 123459128 123459479 -58955763 - L1ME4a LINE L1 -16 6105 5698 1705 179 11 0 chr6 123459479 123459758 -58955484 + AluJo SINE Alu 1 282 -30 307 281 133 61 chr6 123459758 123459961 -58955281 - L1ME4a LINE L1 -423 5698 5511 22 0 0 0 chr6 123460768 123460790 -58954452 + AT_rich Low_complexity Low_complexity 1 22 0 225 317 19 48 chr6 123461399 123461503 -58953739 + LTR16A LTR ERVL 172 272 -178 488 299 142 25 chr6 123461656 123461957 -58953285 - MLT1H1 LTR MaLR -210 345 19 296 349 48 79 chr6 123462265 123462416 -58952826 + MIR SINE MIR 12 153 -109 2442 53 7 13 chr6 123462416 123462718 -58952524 - AluY SINE Alu -11 300 1 296 349 48 79 chr6 123462718 123462818 -58952424 + MIR SINE MIR 153 255 -7 322 338 37 10 chr6 123463767 123463900 -58951342 + MIR SINE MIR 25 142 -66 200 206 62 10 chr6 123464130 123464227 -58951015 + (TA)n Simple_repeat Simple_repeat 1 102 0 1634 183 3 14 chr6 123464250 123464545 -58950697 - AluSx SINE Alu -20 292 1 21 57 0 0 chr6 123465545 123465580 -58949662 + AT_rich Low_complexity Low_complexity 1 35 0 308 182 106 0 chr6 123465663 123465729 -58949513 + MER58B DNA MER1_type 266 338 -3 388 230 10 0 chr6 123466044 123466144 -58949098 - L1MA7 LINE L1 -12 6279 6179 2168 92 0 24 chr6 123466297 123466590 -58948652 - AluSc SINE Alu -6 303 18 506 198 126 48 chr6 123466979 123467146 -58948096 - MER63A DNA MER1_type 0 210 31 259 274 28 19 chr6 123468794 123468900 -58946342 + MER103 DNA DNA 60 166 0 269 310 35 0 chr6 123468997 123469113 -58946129 + L2 LINE L2 2221 2340 -974 269 256 188 34 chr6 123469229 123469346 -58945896 + L2 LINE L2 3123 3257 -15 2212 69 0 4 chr6 123469491 123469766 -58945476 + AluY SINE Alu 33 306 -5 620 196 71 0 chr6 123469784 123469896 -58945346 + FLAM_C SINE Alu 1 120 -23 210 37 0 0 chr6 123469896 123469923 -58945319 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 211 119 48 0 chr6 123471384 123471426 -58943816 + MIR SINE MIR 179 222 -40 589 39 0 0 chr6 123471564 123471642 -58943600 - L1MA4A LINE L1 -6 6297 6220 353 345 97 10 chr6 123472403 123472609 -58942633 + MIR SINE MIR 28 251 -11 398 315 36 80 chr6 123472698 123472949 -58942293 + L2 LINE L2 1995 2234 -1080 372 239 0 11 chr6 123472949 123473037 -58942205 + MLT1F1 LTR MaLR 1 87 -480 1169 211 38 28 chr6 123473049 123473356 -58941886 + MLT1F1 LTR MaLR 221 567 0 1215 253 63 60 chr6 123473356 123473474 -58941768 + L2 LINE L2 2230 2346 -968 2314 168 35 76 chr6 123473474 123474050 -58941192 + MLT2B3 LTR ERVL 3 554 0 1215 253 63 60 chr6 123474050 123474410 -58940832 + L2 LINE L2 2346 2709 -605 761 327 43 64 chr6 123474433 123474965 -58940277 + L1ME2 LINE L1 1 521 -5549 183 156 0 0 chr6 123475252 123475284 -58939958 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 653 256 102 14 chr6 123475285 123475649 -58939593 + L1ME2 LINE L1 544 939 -5131 1139 247 26 101 chr6 123475652 123476198 -58939044 + MLT1D LTR MaLR 1 505 0 722 303 7 7 chr6 123476231 123476515 -58938727 + L1ME2 LINE L1 984 1267 -4815 2460 253 52 17 chr6 123476527 123477629 -58937613 + L1ME2 LINE L1 4834 5975 -123 2518 54 0 0 chr6 123477629 123477927 -58937315 - AluSg SINE Alu -12 298 1 781 193 34 77 chr6 123479711 123479752 -58935490 - L1MB4 LINE L1 0 6180 6139 2245 101 3 0 chr6 123479752 123480048 -58935194 - AluSp SINE Alu -16 297 1 781 193 34 77 chr6 123480048 123480239 -58935003 - L1MB4 LINE L1 -41 6139 5958 417 265 52 29 chr6 123480964 123481074 -58934168 - L2 LINE L2 -12 3301 3186 495 155 0 86 chr6 123481074 123481190 -58934052 + L1PA10 LINE L1 6062 6167 -1 417 265 52 29 chr6 123481190 123481215 -58934027 - L2 LINE L2 -127 3186 3163 185 322 149 0 chr6 123481384 123481505 -58933737 - L2 LINE L2 -254 3059 2921 1966 147 0 23 chr6 123481724 123482023 -58933219 - AluSx SINE Alu -20 292 1 304 365 88 10 chr6 123484091 123484283 -58930959 + L2 LINE L2 2562 2768 -546 268 336 67 0 chr6 123484345 123484449 -58930793 + L2 LINE L2 3162 3272 0 572 221 76 19 chr6 123484906 123485064 -58930178 + MIR SINE MIR 80 246 -16 32 43 0 0 chr6 123485191 123485237 -58930005 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr6 123485279 123485303 -58929939 + AT_rich Low_complexity Low_complexity 1 24 0 349 313 69 19 chr6 123486100 123486260 -58928982 - MIR3 SINE MIR -22 186 19 2401 74 7 7 chr6 123487581 123487890 -58927352 + AluY SINE Alu 1 309 -2 270 136 0 0 chr6 123489059 123489103 -58926139 + (TA)n Simple_repeat Simple_repeat 1 44 0 1616 199 16 30 chr6 123489618 123489984 -58925258 - MLT1A1 LTR MaLR -4 361 1 2217 221 20 6 chr6 123489984 123490460 -58924782 - MLT1A1-int LTR MaLR 0 1735 1219 364 263 20 0 chr6 123490585 123490684 -58924558 - MLT1A1-int LTR MaLR -958 777 677 1749 228 13 37 chr6 123490806 123491267 -58923975 - MLT1A1-int LTR MaLR -639 732 283 1637 211 40 8 chr6 123491267 123491618 -58923624 + MLT1A1 LTR MaLR 1 362 -3 698 195 32 37 chr6 123491622 123491821 -58923421 - MLT1A1-int LTR MaLR -1452 199 12 2150 202 28 9 chr6 123491834 123492336 -58922906 + MER44D DNA MER2_type 6 604 -1 883 244 28 61 chr6 123492347 123492773 -58922469 - MLT1A2 LTR MaLR 0 374 1 851 131 35 0 chr6 123493562 123493707 -58921535 - L1MA2 LINE L1 0 6304 6155 3317 82 16 0 chr6 123493713 123494164 -58921078 + THE1-int LTR MaLR 96 553 -1027 2580 141 0 8 chr6 123494161 123494543 -58920699 + THE1-int LTR MaLR 762 1140 -440 * 1431 128 8 34 chr6 123494543 123494777 -58920465 + THE1B LTR MaLR 132 359 -5 392 320 39 0 chr6 123494778 123494906 -58920336 + MIR SINE MIR 76 208 -54 1090 154 11 15 chr6 123494940 123495207 -58920035 + MLT1B LTR MaLR 35 390 0 1114 236 63 109 chr6 123495316 123495757 -58919485 - MLT1F1 LTR MaLR 0 567 147 7436 92 7 20 chr6 123495867 123496939 -58918303 + MER11C LTR ERVK 1 1057 -14 249 292 0 28 chr6 123496977 123497049 -58918193 - MLT1F1 LTR MaLR -511 82 13 204 256 0 0 chr6 123498737 123498776 -58916466 - L2 LINE L2 -97 3175 3137 13348 64 14 0 chr6 123500170 123502678 -58912564 + L1PA6 LINE L1 3627 6150 -4 23 33 0 0 chr6 123503244 123503274 -58911968 + AT_rich Low_complexity Low_complexity 1 30 0 5949 98 21 15 chr6 123503407 123504603 -58910639 + L1PA10 LINE L1 4936 6149 -19 28 0 0 0 chr6 123504604 123504632 -58910610 + AT_rich Low_complexity Low_complexity 1 28 0 273 29 0 0 chr6 123505976 123506010 -58909232 + (TC)n Simple_repeat Simple_repeat 1 34 0 * 459 0 0 0 chr6 123506009 123506060 -58909182 + (CA)n Simple_repeat Simple_repeat 1 51 0 288 226 101 46 chr6 123506417 123506586 -58908656 + MLT1J2 LTR MaLR 131 345 -105 410 296 24 8 chr6 123507071 123507196 -58908046 - MER94 DNA DNA -7 127 1 195 42 0 0 chr6 123507461 123507485 -58907757 + (CA)n Simple_repeat Simple_repeat 1 24 0 350 325 55 31 chr6 123507502 123507665 -58907577 + MIR SINE MIR 50 216 -46 421 311 33 0 chr6 123508332 123508483 -58906759 - MIR SINE MIR -32 230 75 796 316 20 4 chr6 123508487 123508737 -58906505 - MIR SINE MIR -3 259 6 666 314 14 5 chr6 123509225 123509432 -58905810 + MIR SINE MIR 2 210 -52 30 27 0 0 chr6 123510183 123510220 -58905022 + AT_rich Low_complexity Low_complexity 1 37 0 1107 158 0 6 chr6 123511003 123511174 -58904068 - AluSg/x SINE Alu -9 303 134 2025 122 10 0 chr6 123511174 123511469 -58903773 - AluSx SINE Alu -14 298 1 1872 133 25 0 chr6 123512327 123512606 -58902636 + AluSx SINE Alu 1 286 -26 387 0 0 0 chr6 123512608 123512651 -58902591 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 250 92 50 chr6 123513282 123513402 -58901840 - MIR SINE MIR -26 236 112 1527 103 0 5 chr6 123514746 123514959 -58900283 + AluY SINE Alu 100 311 0 3167 32 0 0 chr6 123516955 123517325 -58897917 - L1PA3 LINE L1 -13 6142 5773 32 0 0 0 chr6 123517885 123517917 -58897325 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr6 123518027 123518069 -58897173 + AT_rich Low_complexity Low_complexity 1 42 0 206 170 100 0 chr6 123518293 123518393 -58896849 + (TA)n Simple_repeat Simple_repeat 2 111 0 2705 96 19 0 chr6 123519631 123519997 -58895245 - THE1C LTR MaLR -2 373 1 180 77 0 0 chr6 123520380 123520406 -58894836 + (A)n Simple_repeat Simple_repeat 1 26 0 235 314 63 85 chr6 123520408 123520631 -58894611 + MIR SINE MIR 18 235 -27 498 291 42 0 chr6 123520632 123520797 -58894445 - LTR16C LTR ERVL -3 488 317 300 293 13 0 chr6 123520805 123520880 -58894362 - MIR SINE MIR -134 128 53 523 243 64 25 chr6 123521427 123521629 -58893613 - MIR SINE MIR 0 262 53 606 155 10 1 chr6 123522306 123522416 -58892826 + L1MD1 LINE L1 5623 5714 -645 1953 218 35 10 chr6 123522507 123523019 -58892223 + L1MD1 LINE L1 5728 6242 0 670 260 46 23 chr6 123523676 123523895 -58891347 + MIR SINE MIR 31 254 -8 21 36 0 0 chr6 123523902 123523930 -58891312 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr6 123524157 123524185 -58891057 + (TG)n Simple_repeat Simple_repeat 2 29 0 1444 222 91 3 chr6 123524317 123524678 -58890564 - MSTD LTR MaLR -3 393 1 1770 165 16 23 chr6 123525354 123525657 -58889585 - AluJb SINE Alu -11 301 1 2279 115 5 39 chr6 123525940 123526322 -58888920 - L1PB3 LINE L1 -78 6076 5708 6607 135 37 23 chr6 123526600 123527812 -58887430 + Tigger3b DNA MER2_type 2 1230 -1 354 270 34 34 chr6 123527856 123528004 -58887238 + MER5A DNA MER1_type 41 188 -1 592 338 43 0 chr6 123528276 123528486 -58886756 + MIR SINE MIR 15 233 -29 187 237 86 43 chr6 123529961 123530054 -58885188 - MER5B DNA MER1_type 0 178 82 343 305 51 34 chr6 123530214 123530506 -58884736 + L1ME LINE L1 818 1114 -5091 352 221 18 0 chr6 123530629 123530854 -58884388 + (TA)n Simple_repeat Simple_repeat 1 229 0 685 288 74 24 chr6 123530887 123531265 -58883977 + L1ME LINE L1 1274 1670 -4726 857 121 0 0 chr6 123531291 123531423 -58883819 - L1PA13 LINE L1 -1 6162 6031 28 71 0 0 chr6 123531525 123531581 -58883661 + AT_rich Low_complexity Low_complexity 1 56 0 478 259 107 62 chr6 123531588 123531831 -58883411 + L1ME LINE L1 2120 2373 -4023 331 197 26 60 chr6 123532639 123532654 -58882588 + L1ME LINE L1 2387 2401 -3814 2296 87 3 19 chr6 123532654 123532966 -58882276 + AluSq SINE Alu 1 307 -6 331 197 26 60 chr6 123532966 123533067 -58882175 + L1ME LINE L1 2401 2499 -3716 2128 109 17 3 chr6 123533264 123533558 -58881684 + AluSx SINE Alu 2 299 -13 435 267 62 14 chr6 123533740 123533886 -58881356 + MIR SINE MIR 60 212 -50 302 333 15 9 chr6 123535015 123535165 -58880077 + MLT2F LTR ERVL 15 166 -462 556 304 143 9 chr6 123535331 123535548 -58879694 + MLT2E LTR ERVL 383 628 0 335 329 15 29 chr6 123535609 123535746 -58879496 - MER115 DNA AcHobo 0 693 559 1446 202 34 84 chr6 123535747 123535951 -58879291 - MLT1A2 LTR MaLR -11 363 185 2196 122 0 0 chr6 123535951 123536254 -58878988 - AluSg SINE Alu -2 308 6 1446 202 34 84 chr6 123536254 123536431 -58878811 - MLT1A2 LTR MaLR -189 185 1 1169 196 42 0 chr6 123536508 123536793 -58878449 - Zaphod DNA AcHobo -433 3598 3302 393 267 0 0 chr6 123536857 123536958 -58878284 - Zaphod DNA AcHobo -3409 622 522 305 268 85 17 chr6 123537389 123537677 -58877565 + L1M4 LINE L1 4031 4342 -1804 485 297 44 5 chr6 123537678 123537955 -58877287 - MLT1H LTR MaLR 0 549 239 705 263 106 38 chr6 123538003 123538239 -58877003 - Zaphod DNA AcHobo -3772 259 8 2362 66 14 0 chr6 123538533 123538821 -58876421 - AluY SINE Alu -19 292 1 690 260 90 31 chr6 123542093 123542316 -58872926 - MIR SINE MIR -26 236 1 431 145 0 0 chr6 123544351 123544413 -58870829 - MER8 DNA MER2_type 0 239 178 1636 112 89 4 chr6 123544420 123544689 -58870553 + Tigger2 DNA MER2_type 2280 2571 -147 2017 83 7 4 chr6 123544698 123544975 -58870267 - L1PB1 LINE L1 0 6151 5874 9661 211 24 2 chr6 123544976 123547139 -58868103 - L1 LINE L1 -1746 4400 2190 2477 79 89 8 chr6 123547139 123547508 -58867734 + MLT2A1 LTR ERVL 1 399 -45 9235 131 56 10 chr6 123547775 123550377 -58864865 - L1PBa LINE L1 -3953 2910 1 854 176 0 34 chr6 123550389 123550537 -58864705 + Tigger2 DNA MER2_type 2565 2707 -11 1383 295 67 9 chr6 123550821 123551269 -58863973 + L2 LINE L2 1184 1657 -1657 1496 267 83 115 chr6 123551269 123551691 -58863551 + L2 LINE L2 1955 2389 -924 375 94 0 0 chr6 123551691 123551744 -58863498 - MER53 DNA DNA -136 53 1 1496 267 83 115 chr6 123551744 123552666 -58862576 + L2 LINE L2 2389 3312 -1 30 45 0 0 chr6 123555074 123555118 -58860124 + AT_rich Low_complexity Low_complexity 1 44 0 946 169 0 0 chr6 123555197 123555345 -58859897 + FAM SINE Alu 28 175 -10 181 204 68 23 chr6 123555378 123555422 -58859820 + MIR SINE MIR 163 208 -54 1641 160 21 3 chr6 123556960 123557248 -58857994 - L1PB4 LINE L1 -1 6155 5863 250 189 22 89 chr6 123557363 123557453 -58857789 - L2 LINE L2 0 3313 3230 1831 145 178 11 chr6 123558002 123558367 -58856875 - MSTA LTR MaLR 0 428 3 430 250 33 113 chr6 123558411 123558651 -58856591 + MER102b DNA MER1_type 114 334 -7 305 217 0 0 chr6 123559110 123559170 -58856072 + L2 LINE L2 3254 3313 0 1702 155 44 24 chr6 123559276 123559572 -58855670 - AluSx SINE Alu -10 302 1 3465 169 30 29 chr6 123561203 123561860 -58853382 + L1MB3 LINE L1 5482 6142 -41 2259 101 3 0 chr6 123561860 123562156 -58853086 + AluSp SINE Alu 1 297 -16 3465 169 30 29 chr6 123562156 123562197 -58853045 + L1MB3 LINE L1 6142 6181 -2 2453 86 0 0 chr6 123563981 123564285 -58850957 + AluY SINE Alu 1 304 -7 5397 157 23 32 chr6 123565776 123566857 -58848385 - MER11C LTR ERVK 0 1071 1 231 293 61 61 chr6 123567343 123567507 -58847735 - MIR3 SINE MIR -10 198 35 1877 255 133 27 chr6 123568396 123568782 -58846460 - Charlie2 DNA MER1_type -1 2861 2518 249 33 0 0 chr6 123568782 123568812 -58846430 + (CA)n Simple_repeat Simple_repeat 1 30 0 1877 255 133 27 chr6 123568812 123569324 -58845918 - Charlie2 DNA MER1_type -344 2518 1867 935 307 62 10 chr6 123569339 123569645 -58845597 - Charlie2 DNA MER1_type -2460 322 1 2130 128 7 0 chr6 123569921 123570227 -58845015 + AluSc SINE Alu 1 308 -1 1067 120 11 0 chr6 123570235 123570410 -58844832 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 410 368 120 31 chr6 123570869 123571386 -58843856 - L2 LINE L2 -346 2968 2406 * 461 345 45 5 chr6 123571365 123571588 -58843654 - MIR SINE MIR -1 261 30 185 289 155 41 chr6 123571759 123571856 -58843386 - MIR3 SINE MIR -99 109 2 288 0 0 0 chr6 123572077 123572109 -58843133 + (CA)n Simple_repeat Simple_repeat 1 32 0 544 309 32 60 chr6 123572222 123572471 -58842771 + L3b LINE CR1 1330 1571 -12 32 75 0 0 chr6 123572933 123573000 -58842242 + AT_rich Low_complexity Low_complexity 1 67 0 351 65 0 0 chr6 123573407 123573453 -58841789 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 277 293 57 19 chr6 123573628 123573734 -58841508 + MLT2E LTR ERVL 32 141 -487 198 0 0 0 chr6 123574357 123574379 -58840863 + (TA)n Simple_repeat Simple_repeat 1 22 0 8370 84 5 0 chr6 123574379 123576289 -58838953 - L1PA7 LINE L1 -19 6135 4221 493 326 90 66 chr6 123577071 123577419 -58837823 - L2 LINE L2 -9 3304 2939 2391 77 3 0 chr6 123577419 123577717 -58837525 + AluY SINE Alu 1 299 -12 493 326 90 66 chr6 123577717 123577856 -58837386 - L2 LINE L2 -374 2939 2805 557 277 19 6 chr6 123577910 123578069 -58837173 - L2 LINE L2 -523 2791 2631 428 315 78 22 chr6 123578073 123578305 -58836937 - L2 LINE L2 -919 2395 2151 252 291 181 16 chr6 123579476 123579603 -58835639 + MIR SINE MIR 4 151 -111 324 241 163 14 chr6 123580378 123580519 -58834723 - MIR SINE MIR 0 262 101 508 261 27 55 chr6 123580920 123581177 -58834065 + L1ME3A LINE L1 5689 5938 -232 24 32 0 0 chr6 123581388 123581419 -58833823 + AT_rich Low_complexity Low_complexity 1 31 0 281 284 108 40 chr6 123581480 123581628 -58833614 - MIR SINE MIR -66 196 39 320 336 91 0 chr6 123584709 123584852 -58830390 + MIR SINE MIR 2 157 -105 328 259 0 12 chr6 123585961 123586042 -58829200 + MLT1L LTR MaLR 1 80 -535 685 304 80 0 chr6 123586598 123586822 -58828420 - MIR SINE MIR -13 249 8 340 254 177 11 chr6 123588886 123589067 -58826175 - MLT1K LTR MaLR 0 588 378 840 137 155 0 chr6 123589302 123589463 -58825779 + MER5A DNA MER1_type 4 189 0 1155 171 81 5 chr6 123590962 123591184 -58824058 - Tigger5 DNA MER2_type -5 2318 2080 5501 161 14 41 chr6 123591285 123592918 -58822324 + L1MA4A LINE L1 4696 6292 -11 376 272 107 12 chr6 123592939 123593108 -58822134 + MIR SINE MIR 68 252 -10 261 359 22 0 chr6 123593181 123593273 -58821969 - L2 LINE L2 -240 3032 2939 603 306 48 5 chr6 123593274 123593460 -58821782 + LTR33 LTR ERVL 3 196 -325 465 286 18 18 chr6 123593516 123593687 -58821555 + LTR33 LTR ERVL 344 514 -7 1315 265 36 0 chr6 123593997 123594382 -58820860 - L1M4 LINE L1 -2134 4012 3614 189 0 0 0 chr6 123594571 123594592 -58820650 + (GA)n Simple_repeat Simple_repeat 2 22 0 222 171 0 0 chr6 123594612 123594653 -58820589 + (TA)n Simple_repeat Simple_repeat 2 42 0 10355 175 18 12 chr6 123594653 123597512 -58817730 - L1PA14 LINE L1 -4 6157 3291 305 250 16 55 chr6 123597558 123597686 -58817556 + L1M4 LINE L1 3073 3195 -2951 293 237 0 13 chr6 123600058 123600134 -58815108 + MER116 DNA Mariner 6 80 0 272 329 0 0 chr6 123600134 123600216 -58815026 + MIR3 SINE MIR 79 160 -48 815 217 160 44 chr6 123600945 123601114 -58814128 - L1MC4 LINE L1 -10 8032 7884 2196 135 114 5 chr6 123601114 123601500 -58813742 + MSTA LTR MaLR 1 428 0 815 217 160 44 chr6 123601500 123601627 -58813615 - L1MC4 LINE L1 -158 7884 7773 1974 134 3 0 chr6 123601627 123601931 -58813311 - AluSx SINE Alu 0 305 1 815 217 160 44 chr6 123601931 123602019 -58813223 - L1MC4 LINE L1 -269 7773 7601 184 375 161 18 chr6 123602126 123602238 -58813004 + MIR SINE MIR 16 143 -65 346 240 0 87 chr6 123602496 123602600 -58812642 - MER20 DNA MER1_type -4 215 121 370 179 21 0 chr6 123602825 123602920 -58812322 + GA-rich Low_complexity Low_complexity 4 100 0 718 52 0 0 chr6 123603419 123603515 -58811727 - L1PA8 LINE L1 0 6172 6077 945 205 57 35 chr6 123603926 123604261 -58810981 + MSTD LTR MaLR 3 394 -2 285 343 203 5 chr6 123604561 123604768 -58810474 + MIR SINE MIR 15 262 0 244 227 0 0 chr6 123605101 123605145 -58810097 + L2 LINE L2 3216 3259 -13 22 80 0 0 chr6 123605706 123605756 -58809486 + AT_rich Low_complexity Low_complexity 1 50 0 807 276 50 22 chr6 123605768 123606130 -58809112 + L1PBa LINE L1 1 372 -6491 292 169 0 0 chr6 123606210 123606269 -58808973 + L1PB1 LINE L1 6090 6148 -3 198 378 67 0 chr6 123606952 123607042 -58808200 - MIR SINE MIR -55 153 58 260 250 16 0 chr6 123607724 123607788 -58807454 + GA-rich Low_complexity Low_complexity 2 66 0 731 227 73 131 chr6 123608263 123608716 -58806526 + LTR28 LTR ERV1 1 491 -10 2007 149 7 0 chr6 123609051 123609347 -58805895 + AluSx SINE Alu 2 299 -13 207 0 0 0 chr6 123609436 123609459 -58805783 + (CA)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr6 123610063 123610085 -58805157 + AT_rich Low_complexity Low_complexity 1 22 0 2635 86 13 18 chr6 123610114 123610498 -58804744 - L1PA14 LINE L1 0 6161 5780 270 230 14 14 chr6 123610498 123610572 -58804670 + (TA)n Simple_repeat Simple_repeat 1 74 0 184 219 0 0 chr6 123610630 123610671 -58804571 + L2 LINE L2 3270 3310 -3 21 0 0 0 chr6 123611286 123611307 -58803935 + AT_rich Low_complexity Low_complexity 1 21 0 397 264 15 90 chr6 123612648 123612849 -58802393 + L2 LINE L2 3091 3276 -37 527 264 0 0 chr6 123613452 123613562 -58801680 - MER81 DNA DNA 0 114 5 190 236 0 73 chr6 123614614 123614669 -58800573 - MIR SINE MIR -131 131 81 251 263 26 0 chr6 123614835 123614911 -58800331 + MIR SINE MIR 64 141 -67 342 0 0 0 chr6 123614911 123614949 -58800293 + (A)n Simple_repeat Simple_repeat 1 38 0 279 0 0 0 chr6 123615884 123615915 -58799327 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1351 214 22 0 chr6 123615917 123616193 -58799049 - AluJo SINE Alu -30 282 1 441 342 78 65 chr6 123616638 123617510 -58797732 + L2 LINE L2 2360 3255 -17 983 220 9 23 chr6 123618706 123618924 -58796318 - MER20 DNA MER1_type -4 215 1 490 238 49 159 chr6 123619123 123619218 -58796024 + L2 LINE L2 1525 1629 -1685 2155 97 31 0 chr6 123619218 123619506 -58795736 - AluSq SINE Alu -16 297 1 490 238 49 159 chr6 123619506 123619568 -58795674 + L2 LINE L2 1629 1696 -1618 2036 139 33 0 chr6 123619568 123619934 -58795308 + L1MA8 LINE L1 5912 6289 -2 490 238 49 159 chr6 123619934 123620145 -58795097 + L2 LINE L2 1696 1853 -1461 6058 101 81 116 chr6 123620491 123622068 -58793174 + pTR5 LTR ERV1 743 2438 0 668 178 55 69 chr6 123623621 123623823 -58791419 - MER3 DNA MER1_type 0 209 11 511 269 21 14 chr6 123624169 123624314 -58790928 + MER3 DNA MER1_type 8 153 -56 1716 212 151 96 chr6 123624410 123624758 -58790484 + MLT1E1 LTR MaLR 19 415 -239 2483 71 0 0 chr6 123624758 123625069 -58790173 + AluY SINE Alu 1 311 0 1716 212 151 96 chr6 123625069 123625323 -58789919 + MLT1E1 LTR MaLR 415 654 0 197 302 48 0 chr6 123626961 123627024 -58788218 - L2 LINE L2 -4 3309 3244 569 184 18 0 chr6 123627046 123627160 -58788082 + L1MB1 LINE L1 6049 6164 -4 14126 203 50 7 chr6 123627292 123633336 -58781906 + L1P5 LINE L1 7 6483 -384 716 262 34 37 chr6 123633473 123633824 -58781418 + L1PB1 LINE L1 5442 5791 -360 226 246 0 0 chr6 123633796 123633853 -58781389 - L1MC4 LINE L1 -1328 6714 6658 * 204 83 62 0 chr6 123633885 123633933 -58781309 + (TA)n Simple_repeat Simple_repeat 2 52 0 1990 161 11 8 chr6 123633933 123634300 -58780942 + L1PB1 LINE L1 5782 6149 -2 456 332 78 36 chr6 123634449 123634810 -58780432 - L2 LINE L2 -201 3071 2698 1034 159 9 69 chr6 123635015 123635247 -58779995 - MER20 DNA MER1_type -1 218 1 1009 91 0 42 chr6 123635672 123635815 -58779427 - AluSq/x SINE Alu -176 137 1 186 337 89 0 chr6 123635815 123635916 -58779326 - MIR3 SINE MIR -15 193 84 336 127 0 0 chr6 123636798 123636853 -58778389 + (TG)n Simple_repeat Simple_repeat 1 55 0 326 173 263 30 chr6 123638251 123638384 -58776858 + L1ME LINE L1 5660 5823 -298 439 282 47 66 chr6 123641797 123642010 -58773232 - MIR SINE MIR -40 222 14 728 322 23 16 chr6 123642313 123642571 -58772671 - MIR SINE MIR -1 261 2 1196 198 9 0 chr6 123642717 123642944 -58772298 + MLT2B1 LTR ERVL 1 229 -291 2145 158 60 32 chr6 123642967 123643477 -58771765 + MLT2A2 LTR ERVL 4 548 -6 420 71 0 0 chr6 123643477 123643533 -58771709 + (TC)n Simple_repeat Simple_repeat 2 57 0 846 166 162 60 chr6 123643533 123643768 -58771474 + MLT2B1 LTR ERVL 218 476 -44 253 130 43 0 chr6 123643813 123643859 -58771383 - MLT2B1 LTR ERVL -40 480 433 941 269 58 38 chr6 123644972 123645318 -58769924 + MLT1G LTR MaLR 138 490 -100 243 0 0 0 chr6 123645531 123645558 -58769684 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 347 0 40 chr6 123645740 123645815 -58769427 - L2 LINE L2 -12 3301 3230 2187 159 8 13 chr6 123646010 123646401 -58768841 + MLT1B LTR MaLR 2 390 0 432 0 0 0 chr6 123647279 123647327 -58767915 + (TG)n Simple_repeat Simple_repeat 2 49 0 1212 253 40 52 chr6 123647606 123648009 -58767233 - L2 LINE L2 -60 3253 2856 2824 19 0 0 chr6 123648014 123648325 -58766917 + AluYb8 SINE Alu 1 311 -7 283 363 101 36 chr6 123648350 123648766 -58766476 - L2 LINE L2 0 3313 2871 273 365 107 56 chr6 123648824 123649589 -58765653 + L2 LINE L2 2206 3012 -260 230 140 0 20 chr6 123649721 123649771 -58765471 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 25 0 0 0 chr6 123650793 123650818 -58764424 + AT_rich Low_complexity Low_complexity 1 25 0 318 279 125 0 chr6 123650927 123651063 -58764179 + MIR SINE MIR 110 262 0 26 50 0 0 chr6 123651097 123651137 -58764105 + AT_rich Low_complexity Low_complexity 1 40 0 5874 195 2 4 chr6 123651351 123652553 -58762689 - L1 LINE L1 -1228 4918 3720 30 27 0 0 chr6 123653272 123653309 -58761933 + AT_rich Low_complexity Low_complexity 1 37 0 2274 68 30 14 chr6 123653695 123653991 -58761251 + AluY SINE Alu 1 301 -10 34 65 0 0 chr6 123654070 123654132 -58761110 + AT_rich Low_complexity Low_complexity 1 62 0 24 32 0 0 chr6 123654204 123654235 -58761007 + AT_rich Low_complexity Low_complexity 1 31 0 6386 224 49 42 chr6 123654643 123654974 -58760268 + MLT1G-int LTR MaLR 23 350 -1385 2182 102 0 16 chr6 123654974 123655327 -58759915 + AluSx SINE Alu 1 312 0 6386 224 49 42 chr6 123655327 123656563 -58758679 + MLT1G-int LTR MaLR 350 1601 -134 412 213 106 26 chr6 123656566 123656683 -58758559 + MLT1A2 LTR MaLR 21 149 -216 1235 29 0 0 chr6 123656686 123656826 -58758416 + L1PA5 LINE L1 5528 5667 -487 1384 47 0 0 chr6 123656828 123656998 -58758244 + L1PA5 LINE L1 5985 6154 0 810 181 50 22 chr6 123657025 123657207 -58758035 + MLT1A2 LTR MaLR 175 361 -13 1104 171 9 19 chr6 123657810 123658021 -58757221 + L1PA15 LINE L1 5955 6163 -2 5666 45 6 4 chr6 123658131 123659018 -58756224 - L1PA5 LINE L1 -598 5556 4671 4887 44 0 0 chr6 123659018 123659597 -58755645 + L1PA5 LINE L1 5560 6150 -4 8977 176 91 34 chr6 123659817 123661909 -58753333 + L1MC1 LINE L1 32 2241 -4185 449 180 0 10 chr6 123661911 123662011 -58753231 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 409 161 37 0 chr6 123662185 123662266 -58752976 + L1MC1 LINE L1 2353 2436 -3990 3460 247 81 9 chr6 123662268 123663714 -58751528 + L1MC1 LINE L1 3279 4851 -1575 1643 180 135 14 chr6 123663715 123664070 -58751172 + MSTA LTR MaLR 31 428 0 5494 201 19 2 chr6 123664073 123665300 -58749942 + L1MC1 LINE L1 5360 6607 -6 332 175 48 78 chr6 123665322 123665425 -58749817 - MER112 DNA MER1_type -125 135 36 222 145 0 48 chr6 123665456 123665518 -58749724 + (TTTCC)n Simple_repeat Simple_repeat 3 61 0 22 35 0 0 chr6 123665852 123665881 -58749361 + AT_rich Low_complexity Low_complexity 1 29 0 395 324 62 100 chr6 123667619 123668180 -58747062 - L2 LINE L2 -1 3271 2726 283 368 18 0 chr6 123668596 123668710 -58746532 + L2 LINE L2 3156 3271 -1 1166 141 6 6 chr6 123668729 123669042 -58746200 - L1PA16 LINE L1 -4 6162 5651 194 290 0 32 chr6 123669638 123669700 -58745542 + L2 LINE L2 2581 2640 -674 1210 218 31 98 chr6 123670062 123670480 -58744762 + MLT1B LTR MaLR 1 390 0 2516 103 11 0 chr6 123670950 123671301 -58743941 - THE1A LTR MaLR 0 355 1 10663 93 7 78 chr6 123671301 123673000 -58742242 - THE1A-int LTR MaLR 0 1580 2 2688 93 3 0 chr6 123673001 123673355 -58741887 - THE1A LTR MaLR 0 355 1 310 21 21 21 chr6 123673359 123673407 -58741835 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 5768 92 44 10 chr6 123673408 123674311 -58740931 - L1PA8 LINE L1 -24 6148 5212 577 258 68 21 chr6 123674510 123674700 -58740542 - MIR SINE MIR -24 238 40 665 271 73 118 chr6 123674916 123675367 -58739875 + L2 LINE L2 2883 3313 0 26 30 0 0 chr6 123675480 123675513 -58739729 + AT_rich Low_complexity Low_complexity 1 33 0 427 299 39 53 chr6 123676045 123676403 -58738839 + L1ME4a LINE L1 5531 5883 -238 276 53 0 0 chr6 123676531 123676569 -58738673 + (TC)n Simple_repeat Simple_repeat 1 38 0 333 0 0 0 chr6 123676569 123676606 -58738636 + (TA)n Simple_repeat Simple_repeat 1 37 0 2291 75 10 3 chr6 123676608 123676900 -58738342 - AluY SINE Alu -17 294 1 23 54 0 0 chr6 123677133 123677170 -58738072 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr6 123677892 123677933 -58737309 + AT_rich Low_complexity Low_complexity 1 41 0 391 222 63 40 chr6 123678227 123678353 -58736889 - MER96B DNA MER1_type? -178 239 111 423 143 154 0 chr6 123678423 123678514 -58736728 - L1MA8 LINE L1 -59 6232 6128 436 237 82 0 chr6 123678521 123678618 -58736624 + MER96B DNA MER1_type? 312 416 -1 1814 338 49 25 chr6 123679171 123680284 -58734958 - ERVL LTR ERVL -393 5371 4232 509 380 26 16 chr6 123680414 123680823 -58734419 - LTR16B LTR ERVL -78 386 1 361 305 91 25 chr6 123681110 123681307 -58733935 + MIR SINE MIR 53 262 0 1395 215 29 19 chr6 123682392 123682736 -58732506 + MSTD LTR MaLR 1 396 0 454 287 0 0 chr6 123682746 123682840 -58732402 - MER81 DNA DNA -19 95 2 231 356 0 33 chr6 123682840 123682930 -58732312 + MIR SINE MIR 9 95 -167 1511 225 63 9 chr6 123682930 123683277 -58731965 - MSTD LTR MaLR 0 396 31 327 314 35 52 chr6 123683291 123683463 -58731779 + MIR SINE MIR 93 261 -1 224 316 170 19 chr6 123683713 123683919 -58731323 + MIR SINE MIR 12 248 -14 592 321 4 66 chr6 123683927 123684146 -58731096 - MIR SINE MIR 0 262 62 1628 110 11 4 chr6 123684146 123684409 -58730833 + L1MA3 LINE L1 6041 6305 0 592 321 4 66 chr6 123684409 123684463 -58730779 - MIR SINE MIR -200 62 6 1889 157 45 34 chr6 123684713 123685070 -58730172 - THE1B LTR MaLR -2 362 2 497 253 154 41 chr6 123685379 123685671 -58729571 + L1MCc LINE L1 72 396 -6027 429 70 0 0 chr6 123685982 123686039 -58729203 + (GA)n Simple_repeat Simple_repeat 2 58 0 1267 152 68 170 chr6 123686260 123686747 -58728495 - LTR23 LTR ERV1 0 437 1 30 45 0 0 chr6 123686930 123686974 -58728268 + AT_rich Low_complexity Low_complexity 1 44 0 1206 249 128 28 chr6 123687009 123687579 -58727663 + L1ME2 LINE L1 4387 5028 -1118 1883 169 0 25 chr6 123687579 123687719 -58727523 + AluJb SINE Alu 1 143 -169 2275 75 4 0 chr6 123687719 123688032 -58727210 + AluY SINE Alu 3 316 0 1883 169 0 25 chr6 123688032 123688210 -58727032 + AluJb SINE Alu 143 312 0 1206 249 128 28 chr6 123688210 123688273 -58726969 + L1ME2 LINE L1 5028 5083 -1063 901 228 94 18 chr6 123688274 123688300 -58726942 - MLT2D LTR ERVL -7 407 384 423 0 0 0 chr6 123688300 123688347 -58726895 + (TG)n Simple_repeat Simple_repeat 2 48 0 901 228 94 18 chr6 123688347 123688648 -58726594 - MLT2D LTR ERVL -30 384 7 1089 264 99 16 chr6 123688649 123689310 -58725932 + L1ME2 LINE L1 5088 5809 -355 2326 208 42 5 chr6 123689330 123689763 -58725479 + MLT2B2 LTR ERVL 1 449 -66 180 0 0 0 chr6 123689766 123689786 -58725456 + (TC)n Simple_repeat Simple_repeat 1 20 0 279 0 0 0 chr6 123689790 123689821 -58725421 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1197 173 98 0 chr6 123689837 123690091 -58725151 + MER2 DNA MER2_type 40 318 -27 240 156 22 0 chr6 123690093 123690138 -58725104 - MLT2B1 LTR ERVL 0 520 475 198 103 0 0 chr6 123690138 123690167 -58725075 + (CA)n Simple_repeat Simple_repeat 2 30 0 708 264 88 22 chr6 123690184 123690322 -58724920 + L1ME2 LINE L1 5866 5993 -171 2021 145 30 33 chr6 123690322 123690478 -58724764 + THE1B LTR MaLR 1 156 -208 2182 110 3 0 chr6 123690478 123690769 -58724473 - AluY SINE Alu -19 292 1 2021 145 30 33 chr6 123690769 123690977 -58724265 + THE1B LTR MaLR 156 364 0 708 264 88 22 chr6 123690977 123691111 -58724131 + L1ME2 LINE L1 5993 6156 -8 1707 239 34 36 chr6 123691992 123692468 -58722774 - MLT1D LTR MaLR -4 501 27 913 86 34 0 chr6 123694576 123694693 -58720549 + AluSq/x SINE Alu 5 125 -188 285 281 0 0 chr6 123694797 123694879 -58720363 + MER58B DNA MER1_type 255 336 -5 374 316 53 50 chr6 123695413 123695714 -58719528 + MLT1I LTR MaLR 85 386 -23 927 252 14 5 chr6 123695891 123696105 -58719137 + MER20 DNA MER1_type 4 219 0 2898 161 28 19 chr6 123696146 123696688 -58718554 - MER44D DNA MER2_type -3 602 1 1694 185 28 14 chr6 123697018 123697417 -58717825 + L1PB4 LINE L1 5644 6045 -111 22202 113 19 9 chr6 123698110 123701669 -58713573 + L1P LINE L1 11 3603 -2543 6142 225 33 25 chr6 123801669 123803354 -58611888 - L1MEc LINE L1 -2249 3966 2269 21 57 0 0 chr6 123803429 123803464 -58611778 + AT_rich Low_complexity Low_complexity 1 35 0 1362 289 94 34 chr6 123803724 123804774 -58610468 - L1MEc LINE L1 -4029 2367 1255 1316 142 13 54 chr6 123804787 123805026 -58610216 - AluSg/x SINE Alu 0 312 84 363 23 0 0 chr6 123805127 123805171 -58610071 + (TC)n Simple_repeat Simple_repeat 1 44 0 2245 107 16 10 chr6 123805888 123806198 -58609044 + AluSx SINE Alu 1 312 0 1652 139 71 89 chr6 123806415 123806479 -58608763 + THE1C LTR MaLR 1 65 -310 2057 134 3 10 chr6 123806479 123806793 -58608449 - AluSx SINE Alu 0 312 1 1652 139 71 89 chr6 123806793 123806944 -58608298 + THE1C LTR MaLR 65 217 -158 351 44 0 0 chr6 123806944 123806989 -58608253 + (TC)n Simple_repeat Simple_repeat 2 46 0 1652 139 71 89 chr6 123806989 123807154 -58608088 + THE1C LTR MaLR 217 375 0 306 328 159 21 chr6 123807288 123807477 -58607765 - MIR SINE MIR -1 261 47 3127 91 14 0 chr6 123807633 123808071 -58607171 + L1PA13 LINE L1 5720 6163 0 207 0 0 0 chr6 123809907 123809930 -58605312 + (TG)n Simple_repeat Simple_repeat 2 24 0 2663 207 4 2 chr6 123810673 123811223 -58604019 - L1PA16 LINE L1 -14 6152 5602 353 363 113 6 chr6 123811225 123811393 -58603849 + MIR SINE MIR 21 206 -56 1751 207 31 36 chr6 123811503 123811947 -58603295 - L1MB5 LINE L1 -8 6166 5725 2086 125 10 0 chr6 123812157 123812460 -58602782 - AluSx SINE Alu -6 306 1 703 368 65 45 chr6 123814168 123814986 -58600256 + L2 LINE L2 1836 2669 -645 1186 181 68 17 chr6 123814998 123815235 -58600007 + Ricksha DNA DNA 41 289 -2957 * 5687 171 51 40 chr6 123815233 123816429 -58598813 + Ricksha DNA DNA 1821 3029 -217 425 213 11 0 chr6 123816440 123816534 -58598708 - Ricksha DNA DNA -1120 134 40 336 359 47 16 chr6 123816982 123817110 -58598132 + L2 LINE L2 3139 3270 -2 21 82 0 0 chr6 123817514 123817563 -58597679 + AT_rich Low_complexity Low_complexity 1 49 0 27 29 0 0 chr6 123817830 123817864 -58597378 + AT_rich Low_complexity Low_complexity 1 34 0 41311 40 26 4 chr6 123818075 123824108 -58591134 - L1PA2 LINE L1 0 6155 4 268 286 116 27 chr6 123824388 123824500 -58590742 + MLT1J2 LTR MaLR 37 158 -292 525 193 105 0 chr6 123824529 123824643 -58590599 - AluJb SINE Alu -4 308 183 749 159 0 23 chr6 123824646 123824778 -58590464 - FLAM_C SINE Alu -9 134 6 261 0 0 0 chr6 123825565 123825594 -58589648 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 588 324 21 48 chr6 123827212 123827502 -58587740 - L2 LINE L2 -22 3291 3010 448 221 76 23 chr6 123827786 123827917 -58587325 - MIR SINE MIR -25 237 100 2188 308 108 27 chr6 123828507 123829711 -58585531 + L2 LINE L2 254 1554 -1760 394 332 126 5 chr6 123829711 123829910 -58585332 + L2 LINE L2 1826 2048 -1266 269 353 36 18 chr6 123829928 123830152 -58585090 + L1ME3 LINE L1 3545 3772 -2374 213 132 73 15 chr6 123830153 123830221 -58585021 + (TA)n Simple_repeat Simple_repeat 2 73 0 543 279 106 68 chr6 123830221 123831204 -58584038 + L1ME3 LINE L1 3781 4810 -1336 470 305 79 40 chr6 123831216 123831945 -58583297 + L1ME3 LINE L1 4942 5699 -463 308 263 22 102 chr6 123832207 123832344 -58582898 + L1ME3 LINE L1 5956 6081 -81 321 183 0 0 chr6 123833221 123833281 -58581961 + FLAM SINE Alu 73 132 -1 449 276 0 0 chr6 123834910 123835055 -58580187 + (TA)n Simple_repeat Simple_repeat 1 145 0 1629 176 57 31 chr6 123835058 123835410 -58579832 - THE1C LTR MaLR 0 375 15 592 45 0 34 chr6 123835424 123835512 -58579730 - THE1C-int LTR MaLR 0 1580 1496 2168 167 30 41 chr6 123835512 123836066 -58579176 + MLT2A2 LTR ERVL 1 554 0 895 112 15 0 chr6 123836066 123836200 -58579042 - THE1-int LTR MaLR -80 1500 1365 1745 125 37 40 chr6 123836311 123836608 -58578634 - AluSx SINE Alu -16 296 1 30 0 0 0 chr6 123838709 123838739 -58576503 + AT_rich Low_complexity Low_complexity 1 30 0 6366 137 54 22 chr6 123838849 123840042 -58575200 + Tigger3b DNA MER2_type 1 1231 0 360 0 0 0 chr6 123840167 123840207 -58575035 + (CA)n Simple_repeat Simple_repeat 2 41 0 202 170 21 21 chr6 123841489 123841536 -58573706 + GA-rich Low_complexity Low_complexity 2 48 0 22 56 0 0 chr6 123842010 123842046 -58573196 + AT_rich Low_complexity Low_complexity 1 36 0 4052 108 50 0 chr6 123842063 123842665 -58572577 + MER41B LTR ERV1 1 632 -3 28 29 0 0 chr6 123842666 123842701 -58572541 + AT_rich Low_complexity Low_complexity 1 35 0 1502 200 37 129 chr6 123843015 123843581 -58571661 - MER67D LTR ERV1 0 514 1 4259 139 128 12 chr6 123843717 123844524 -58570718 - MER4D LTR ERV1 0 903 4 252 259 12 35 chr6 123845284 123845369 -58569873 + (CATATA)n Simple_repeat Simple_repeat 1 83 0 212 155 0 52 chr6 123845396 123845454 -58569788 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 645 226 22 87 chr6 123845818 123846048 -58569194 + LTR12 LTR ERV1 238 452 -262 11332 226 22 17 chr6 123846092 123849231 -58566011 + HERV17 LTR ERV1 1 3776 -4850 1439 211 34 19 chr6 123849223 123849546 -58565696 + HERV17 LTR ERV1 8299 8626 0 * 877 194 12 65 chr6 123849849 123850114 -58565128 + LTR12 LTR ERV1 238 452 -262 592 256 102 79 chr6 123851338 123851592 -58563650 + MIR SINE MIR 3 262 0 264 137 0 0 chr6 123852492 123852543 -58562699 + (TC)n Simple_repeat Simple_repeat 1 51 0 189 263 12 100 chr6 123853563 123853643 -58561599 - L3 LINE CR1 -1083 494 422 447 278 64 35 chr6 123853710 123853883 -58561359 + MER5B DNA MER1_type 1 178 0 261 265 12 0 chr6 123853946 123854029 -58561213 + (TA)n Simple_repeat Simple_repeat 2 85 0 26 0 0 0 chr6 123854428 123854454 -58560788 + AT_rich Low_complexity Low_complexity 1 26 0 457 297 90 79 chr6 123854476 123854681 -58560561 - L1ME4a LINE L1 -264 5857 5656 1819 166 10 13 chr6 123854681 123854994 -58560248 - AluJb SINE Alu 0 312 1 457 297 90 79 chr6 123854994 123855256 -58559986 - L1ME4a LINE L1 -465 5656 5385 2373 94 7 0 chr6 123855773 123856082 -58559160 + AluSq SINE Alu 1 311 -2 792 52 0 0 chr6 123856682 123856779 -58558463 + L1PA3 LINE L1 2 98 -6048 * 37071 38 25 1 chr6 123856773 123862182 -58553060 + L1PA3 LINE L1 617 6153 -2 195 42 0 0 chr6 123862214 123862238 -58553004 + (A)n Simple_repeat Simple_repeat 1 24 0 243 272 114 25 chr6 123862450 123862608 -58552634 + L1ME LINE L1 5588 5759 -362 511 228 288 5 chr6 123862617 123862801 -58552441 - MIR SINE MIR -12 250 15 265 292 26 26 chr6 123863022 123863135 -58552107 - HAL1b LINE L1 -805 543 431 9394 36 0 0 chr6 123864695 123865823 -58549419 + L1P LINE L1 3633 4760 -1386 22 0 0 0 chr6 123866020 123866042 -58549200 + AT_rich Low_complexity Low_complexity 1 22 0 577 235 25 12 chr6 123866121 123866283 -58548959 + MER96B DNA MER1_type? 254 417 0 2123 127 26 63 chr6 123867798 123868176 -58547066 - THE1B LTR MaLR 0 364 1 11134 110 11 6 chr6 123868176 123869749 -58545493 - THE1B-int LTR MaLR 0 1580 1 2181 134 36 25 chr6 123869751 123870109 -58545133 - THE1B LTR MaLR -2 362 1 473 184 0 58 chr6 123872476 123872579 -58542663 + L1PA16 LINE L1 6057 6153 -13 28 0 0 0 chr6 123872579 123872607 -58542635 + AT_rich Low_complexity Low_complexity 1 28 0 673 333 38 0 chr6 123873158 123873395 -58541847 - MIR SINE MIR -2 260 15 378 340 77 50 chr6 123873663 123874001 -58541241 - L2 LINE L2 0 3313 2967 542 317 89 85 chr6 123874205 123874625 -58540617 - L2 LINE L2 -540 2774 2350 1826 127 39 72 chr6 123874625 123875012 -58540230 + THE1C LTR MaLR 1 374 -1 542 317 89 85 chr6 123875012 123875131 -58540111 - L2 LINE L2 -964 2350 2233 436 310 17 0 chr6 123875133 123875249 -58539993 - LTR16A1 LTR ERVL 0 457 340 538 323 59 89 chr6 123875281 123876147 -58539095 + L2 LINE L2 1497 2336 -978 333 348 54 25 chr6 123876159 123876375 -58538867 + L1ME1 LINE L1 34 304 -6239 1408 248 92 70 chr6 123876873 123877239 -58538003 + L1ME1 LINE L1 909 1265 -5275 210 37 0 0 chr6 123877239 123877266 -58537976 + (TG)n Simple_repeat Simple_repeat 1 27 0 1408 248 92 70 chr6 123877266 123878136 -58537106 + L1ME1 LINE L1 1265 2162 -4378 475 119 0 0 chr6 123878140 123878207 -58537035 + Tigger2 DNA MER2_type 3 69 -2649 * 2239 168 12 5 chr6 123878191 123878602 -58536640 + Tigger2 DNA MER2_type 2267 2680 -38 339 137 3 68 chr6 123878609 123878937 -58536305 + (TA)n Simple_repeat Simple_repeat 1 306 0 272 278 71 14 chr6 123879010 123879291 -58535951 + L1ME1 LINE L1 2354 2650 -3890 1250 99 0 0 chr6 123879316 123879498 -58535744 + L1P LINE L1 4690 4871 -1275 3451 62 0 7 chr6 123879499 123879950 -58535292 + LTR7 LTR ERV1 1 448 -2 20178 94 61 25 chr6 123879952 123883130 -58532112 + HERVH LTR ERV1 1 3290 -4423 3364 113 0 4 chr6 123883129 123883625 -58531617 + HERVH LTR ERV1 3500 3993 -3720 * 4267 136 14 1 chr6 123883627 123884281 -58530961 + HERVH LTR ERV1 4488 5149 -2564 1378 134 19 0 chr6 123884282 123884498 -58530744 + HERVH LTR ERV1 5600 5819 -1894 * 2557 71 45 13 chr6 123884496 123884876 -58530366 + HERVH LTR ERV1 7322 7713 0 3344 67 2 7 chr6 123884876 123885326 -58529916 + LTR7 LTR ERV1 1 448 -2 6650 60 24 3 chr6 123885329 123886593 -58528649 + L1PA7 LINE L1 4869 6149 -5 1770 243 50 89 chr6 123886605 123887004 -58528238 + L1ME1 LINE L1 2666 3079 -3461 1297 102 0 5 chr6 123887004 123887190 -58528052 - L1PA13 LINE L1 -4 6159 5975 1770 243 50 89 chr6 123887190 123888102 -58527140 + L1ME1 LINE L1 3079 3925 -2615 855 254 187 36 chr6 123888098 123888515 -58526727 + L1ME1 LINE L1 4139 4491 -2049 * 206 32 32 0 chr6 123888515 123888546 -58526696 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 855 254 187 36 chr6 123888546 123888742 -58526500 + L1ME1 LINE L1 4491 4845 -1695 2687 235 56 9 chr6 123888775 123889642 -58525600 + L1ME1 LINE L1 5582 6481 -79 712 250 80 66 chr6 123889737 123890006 -58525236 + L1ME1 LINE L1 5905 6145 -19 346 349 141 17 chr6 123890009 123890250 -58524992 + L2 LINE L2 2364 2634 -680 611 257 104 10 chr6 123890523 123890725 -58524517 + LTR50 LTR ERVL 1 221 -574 620 332 55 18 chr6 123890784 123891119 -58524123 + LTR50 LTR ERVL 342 464 -59 1201 225 4 8 chr6 123891119 123891359 -58523883 + MER8 DNA MER2_type 1 239 0 620 332 55 18 chr6 123891359 123891421 -58523821 + LTR50 LTR ERVL 464 522 -1 2157 66 43 26 chr6 123891479 123891781 -58523461 - AluY SINE Alu -4 307 1 258 360 83 31 chr6 123891781 123892109 -58523133 + L2 LINE L2 2683 3024 -248 687 163 0 0 chr6 123892110 123892233 -58523009 + (TA)n Simple_repeat Simple_repeat 1 123 0 2224 82 0 0 chr6 123892233 123892514 -58522728 - AluSg SINE Alu -27 283 3 21 0 0 0 chr6 123893743 123893764 -58521478 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 123893846 123893884 -58521358 + AT_rich Low_complexity Low_complexity 1 38 0 258 285 21 14 chr6 123895014 123895211 -58520031 + (TA)n Simple_repeat Simple_repeat 1 198 0 303 296 156 21 chr6 123895305 123895491 -58519751 + MIR SINE MIR 52 262 0 1456 96 18 5 chr6 123895772 123895990 -58519252 - L1MA5 LINE L1 -23 6277 6057 193 361 25 25 chr6 123896600 123896719 -58518523 - L2 LINE L2 0 3272 3154 195 100 0 0 chr6 123897205 123897235 -58518007 + (GA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr6 123898059 123898080 -58517162 + AT_rich Low_complexity Low_complexity 1 21 0 1838 111 15 87 chr6 123898986 123899318 -58515924 + AluSq SINE Alu 1 308 -5 300 250 36 36 chr6 123900681 123900765 -58514477 - L1MC3 LINE L1 -1127 6658 6575 314 294 45 45 chr6 123900765 123901034 -58514208 + L1MEd LINE L1 928 1196 -4923 320 291 95 109 chr6 123901620 123901760 -58513482 - L2 LINE L2 -1143 2171 2031 3103 151 43 35 chr6 123901760 123902335 -58512907 - LTR22 LTR ERVK 0 580 1 320 291 95 109 chr6 123902335 123902898 -58512344 - L2 LINE L2 -1283 2031 1478 239 339 69 0 chr6 123902910 123903040 -58512202 - L2 LINE L2 -2362 952 814 288 0 0 0 chr6 123903978 123904010 -58511232 + (TG)n Simple_repeat Simple_repeat 1 32 0 1699 142 14 0 chr6 123904498 123904780 -58510462 + L1MA3 LINE L1 6020 6305 0 2298 221 78 40 chr6 123904814 123905340 -58509902 + MLT2B3 LTR ERVL 1 546 -8 555 105 64 6 chr6 123905674 123905919 -58509323 - L1PA15 LINE L1 -6 6159 5776 1217 141 133 6 chr6 123905923 123906252 -58508990 - L1PA15 LINE L1 -48 6117 5665 454 273 97 0 chr6 123906350 123906504 -58508738 + Charlie8 DNA MER1_type 11 179 -2238 2531 136 18 0 chr6 123906505 123906901 -58508341 - MER57A LTR ERV1 0 403 1 222 250 0 60 chr6 123908148 123908248 -58506994 + GA-rich Low_complexity Low_complexity 1 94 0 714 232 6 30 chr6 123908269 123908437 -58506805 - MER20 DNA MER1_type 0 219 56 22 0 0 0 chr6 123909017 123909039 -58506203 + AT_rich Low_complexity Low_complexity 1 22 0 255 259 205 18 chr6 123909124 123909236 -58506006 - MIR3 SINE MIR -68 140 8 299 182 0 0 chr6 123909507 123909562 -58505680 - MER3 DNA MER1_type 0 209 155 390 233 0 0 chr6 123909767 123909857 -58505385 + L1M2 LINE L1 5454 5543 -769 * 1886 198 52 2 chr6 123909841 123910261 -58504981 - L1 LINE L1 -2368 3778 3338 1610 133 59 0 chr6 123910264 123910534 -58504708 + L1M2 LINE L1 5494 5779 -533 2229 65 14 7 chr6 123910603 123910894 -58504348 - AluY SINE Alu -18 293 1 21 0 0 0 chr6 123911010 123911031 -58504211 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr6 123912268 123912308 -58502934 + AT_rich Low_complexity Low_complexity 1 40 0 627 108 0 0 chr6 123913122 123913215 -58502027 + (TA)n Simple_repeat Simple_repeat 2 94 0 1939 56 0 99 chr6 123913232 123913516 -58501726 - AluY SINE Alu -55 256 1 23 0 0 0 chr6 123915337 123915360 -58499882 + AT_rich Low_complexity Low_complexity 1 23 0 258 32 0 0 chr6 123916000 123916031 -58499211 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 295 400 45 0 chr6 123916188 123916343 -58498899 + L2 LINE L2 2887 3048 -224 923 232 32 0 chr6 123916575 123916760 -58498482 - MER58A DNA MER1_type -30 194 4 23 0 0 0 chr6 123917104 123917127 -58498115 + AT_rich Low_complexity Low_complexity 1 23 0 234 301 37 51 chr6 123917127 123917343 -58497899 - HAL1b LINE L1 -542 806 594 269 290 0 0 chr6 123917659 123917721 -58497521 + L3 LINE CR1 314 375 -1202 21 0 0 0 chr6 123917970 123917991 -58497251 + AT_rich Low_complexity Low_complexity 1 21 0 3051 180 53 122 chr6 123918485 123918541 -58496701 + L1MB8 LINE L1 4923 4981 -1197 2340 167 47 30 chr6 123918541 123919079 -58496163 + LTR10B LTR ERV1 1 547 0 3051 180 53 122 chr6 123919079 123919096 -58496146 + L1MB8 LINE L1 4981 4998 -1180 2120 109 0 0 chr6 123919096 123919417 -58495825 + AluSq SINE Alu 1 321 0 3051 180 53 122 chr6 123919417 123920259 -58494983 + L1MB8 LINE L1 4998 5725 -453 1065 137 0 0 chr6 123920259 123920467 -58494775 + (TA)n Simple_repeat Simple_repeat 1 208 0 3051 180 53 122 chr6 123920467 123920884 -58494358 + L1MB8 LINE L1 5725 6169 -9 200 383 106 0 chr6 123921029 123921123 -58494119 + MIR3 SINE MIR 9 112 -96 786 284 105 59 chr6 123921203 123921661 -58493581 - MLT1H LTR MaLR -1 548 70 186 43 0 0 chr6 123922769 123922792 -58492450 + (GGGAA)n Simple_repeat Simple_repeat 4 26 0 23 78 0 0 chr6 123923528 123923579 -58491663 + AT_rich Low_complexity Low_complexity 1 51 0 23 33 0 0 chr6 123923681 123923711 -58491531 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr6 123924273 123924315 -58490927 + AT_rich Low_complexity Low_complexity 1 42 0 244 162 44 59 chr6 123926170 123926238 -58489004 + L1MCb LINE L1 16 82 -5963 236 119 99 158 chr6 123926278 123926379 -58488863 + L1MCb LINE L1 469 563 -5482 865 261 66 63 chr6 123926482 123926907 -58488335 + L1MCb LINE L1 571 996 -5049 37 23 0 0 chr6 123927349 123927393 -58487849 + AT_rich Low_complexity Low_complexity 1 44 0 2182 114 0 7 chr6 123928053 123928361 -58486881 + AluY SINE Alu 1 306 -5 694 210 6 6 chr6 123928573 123928909 -58486333 + (CA)n Simple_repeat Simple_repeat 1 336 0 25 31 0 0 chr6 123929056 123929088 -58486154 + AT_rich Low_complexity Low_complexity 1 32 0 703 70 0 0 chr6 123929129 123929229 -58486013 - L1P LINE L1 -4816 1330 1231 610 204 0 7 chr6 123929230 123929521 -58485721 + (TG)n Simple_repeat Simple_repeat 1 288 0 33284 35 1 0 chr6 123929616 123934464 -58480778 + L1PA3 LINE L1 1327 6155 0 2205 274 57 40 chr6 123934545 123935593 -58479649 - L1MEc LINE L1 -4943 1264 245 1924 173 30 19 chr6 123936016 123936387 -58478855 - THE1C LTR MaLR 0 375 1 1136 258 49 69 chr6 123936405 123936956 -58478286 + L1MC5 LINE L1 6694 7233 -728 310 183 24 37 chr6 123936976 123937058 -58478184 + L1PB4 LINE L1 6085 6165 -1 315 351 45 69 chr6 123937889 123938177 -58477065 - L2 LINE L2 -44 3228 2948 995 290 35 24 chr6 123938189 123938479 -58476763 + L2 LINE L2 2199 2491 -823 23 33 0 0 chr6 123938788 123938818 -58476424 + AT_rich Low_complexity Low_complexity 1 30 0 1278 279 43 53 chr6 123938976 123939800 -58475442 + L2 LINE L2 2484 3308 -5 2657 85 19 3 chr6 123939809 123940185 -58475057 + L1PA8 LINE L1 5791 6172 0 314 398 96 28 chr6 123940299 123940686 -58474556 - L2 LINE L2 -480 2834 2422 4939 68 0 0 chr6 123940729 123941363 -58473879 - L1PA6 LINE L1 -2 6152 5519 297 277 76 34 chr6 123941469 123941588 -58473654 + MIR SINE MIR 61 184 -78 237 361 90 20 chr6 123941637 123941881 -58473361 - L2 LINE L2 -978 2336 2076 963 326 20 49 chr6 123943470 123943976 -58471266 - LTR16C LTR ERVL 0 491 1 318 312 94 94 chr6 123944043 123944351 -58470891 - L2 LINE L2 0 3272 2965 16029 153 34 18 chr6 123944638 123944717 -58470525 - L1PA11 LINE L1 -1 7611 7535 2153 120 3 0 chr6 123944717 123945018 -58470224 + AluSp SINE Alu 1 302 -11 16029 153 34 18 chr6 123945018 123947339 -58467903 - L1PA11 LINE L1 -77 7535 5252 201 39 0 0 chr6 123947339 123947365 -58467877 + (TTG)n Simple_repeat Simple_repeat 3 28 0 16029 153 34 18 chr6 123947365 123949339 -58465903 - L1PA11 LINE L1 -2360 5252 3160 2166 97 0 23 chr6 123949339 123949639 -58465603 - AluSg SINE Alu -12 298 6 16029 153 34 18 chr6 123949639 123949999 -58465243 - L1PA11 LINE L1 -4452 3160 2807 271 44 44 0 chr6 123950037 123950082 -58465160 + (TA)n Simple_repeat Simple_repeat 2 48 0 2724 95 31 5 chr6 123950153 123950543 -58464699 - MLT2A1 LTR ERVL -44 400 1 2186 227 12 15 chr6 123950547 123951143 -58464099 - L1PA11 LINE L1 -4760 2824 1467 7253 144 16 13 chr6 123951188 123952352 -58462890 + HSMAR2 DNA Mariner 133 1300 -2 457 265 33 60 chr6 123952358 123952509 -58462733 + L1MA9 LINE L1 6143 6289 -2 4276 252 60 25 chr6 123952512 123953891 -58461351 + L1MB8 LINE L1 2142 3472 -2674 1594 202 19 19 chr6 123953891 123954203 -58461039 + AluJo SINE Alu 1 312 0 4276 252 60 25 chr6 123954203 123954485 -58460757 + L1MB8 LINE L1 3472 3867 -2279 2333 133 5 19 chr6 123954485 123954854 -58460388 - THE1B LTR MaLR 0 364 1 4276 252 60 25 chr6 123954854 123954917 -58460325 + L1MB8 LINE L1 3867 3926 -2220 1614 259 25 8 chr6 123954918 123955408 -58459834 + L1MB8 LINE L1 4201 4698 -1448 1135 185 0 5 chr6 123955434 123955618 -58459624 + AluJo SINE Alu 64 246 -66 3253 236 24 15 chr6 123955618 123957038 -58458204 + L1MB8 LINE L1 4709 6140 -38 225 293 13 0 chr6 123957154 123957229 -58458013 + HAL1 LINE L1 2432 2507 0 24 77 0 0 chr6 123957230 123957282 -58457960 + AT_rich Low_complexity Low_complexity 1 52 0 586 254 117 25 chr6 123957325 123957565 -58457677 - MER46C DNA MER2_type -4 334 73 419 279 77 21 chr6 123959766 123960101 -58455141 + L1ME3A LINE L1 5116 5466 -712 248 322 30 76 chr6 123960173 123960646 -58454596 + L1ME3A LINE L1 5508 5961 -209 1682 33 14 0 chr6 123960797 123961007 -58454235 + L1PA4 LINE L1 5940 6152 -3 7496 29 2 0 chr6 123961334 123962792 -58452450 + L1PA3 LINE L1 4721 6180 0 1387 226 39 30 chr6 123963461 123963798 -58451444 - MLT1A1 LTR MaLR 0 365 26 1103 245 162 57 chr6 123964094 123964748 -58450494 + MER20B DNA MER1_type 1 723 -60 337 67 50 0 chr6 123965919 123965979 -58449263 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 261 83 0 0 chr6 123966543 123966579 -58448663 + (CA)n Simple_repeat Simple_repeat 1 36 0 497 333 12 62 chr6 123966803 123967203 -58448039 + L1MC4a LINE L1 5564 5943 -1865 31904 47 1 2 chr6 123968957 123972922 -58442320 + L1P LINE L1 2 3964 -2182 424 281 0 7 chr6 123972916 123973055 -58442187 - L1ME2 LINE L1 -331 5833 5696 * 779 158 6 22 chr6 123973062 123973245 -58441997 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr6 123973851 123973874 -58441368 + AT_rich Low_complexity Low_complexity 1 23 0 205 162 0 0 chr6 123975241 123975278 -58439964 + (TG)n Simple_repeat Simple_repeat 2 38 0 190 338 56 0 chr6 123975401 123975472 -58439770 + MIR SINE MIR 166 240 -22 307 208 117 0 chr6 123976230 123976307 -58438935 - MER5C DNA MER1_type -1 323 238 1117 221 76 6 chr6 123976317 123976633 -58438609 + L1MB7 LINE L1 5847 6184 0 281 307 141 31 chr6 123977227 123977419 -58437823 - L2 LINE L2 -446 2868 2656 457 267 163 22 chr6 123977654 123977931 -58437311 - Tigger8 DNA MER2_type -173 493 178 339 231 19 10 chr6 123978005 123978109 -58437133 + (TA)n Simple_repeat Simple_repeat 2 106 0 1224 211 103 23 chr6 123978886 123979285 -58435957 - Charlie1a DNA MER1_type 0 1455 1025 2517 204 62 19 chr6 123979285 123979868 -58435374 + LTR28 LTR ERV1 1 608 -412 246 156 22 0 chr6 123979932 123979977 -58435265 + MER52A LTR ERV1 1207 1252 -503 337 252 39 77 chr6 123980014 123980169 -58435073 + MER52A LTR ERV1 1602 1750 -5 3951 218 67 20 chr6 123980196 123981167 -58434075 - Charlie1a DNA MER1_type -433 1022 6 2127 129 0 3 chr6 123981312 123981615 -58433627 + AluSq SINE Alu 1 302 -11 605 239 8 0 chr6 123981947 123982077 -58433165 - FLAM_C SINE Alu -2 131 1 249 33 0 0 chr6 123983876 123983906 -58431336 + (T)n Simple_repeat Simple_repeat 1 30 0 255 333 65 0 chr6 123985443 123985551 -58429691 - MIR SINE MIR -30 232 118 760 298 85 15 chr6 123985577 123985966 -58429276 - LTR33 LTR ERVL -64 457 42 218 242 65 65 chr6 123986012 123986074 -58429168 - MIR SINE MIR -184 78 17 324 83 0 0 chr6 123986257 123986305 -58428937 + (ATG)n Simple_repeat Simple_repeat 2 49 0 543 310 56 43 chr6 123986777 123987009 -58428233 - L2 LINE L2 -2 3311 3077 1328 102 78 0 chr6 123987010 123987216 -58428026 + L1MA2 LINE L1 6083 6304 0 2266 62 0 10 chr6 123987658 123987947 -58427295 + AluY SINE Alu 1 286 -25 207 0 0 0 chr6 123987951 123987974 -58427268 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 21 36 0 0 chr6 123988055 123988083 -58427159 + AT_rich Low_complexity Low_complexity 1 28 0 354 361 74 16 chr6 123988363 123988607 -58426635 + MIR SINE MIR 5 262 0 23 0 0 0 chr6 123988800 123988823 -58426419 + AT_rich Low_complexity Low_complexity 1 23 0 2045 106 3 10 chr6 123989383 123989676 -58425566 - AluSx SINE Alu -21 291 1 432 336 15 2 chr6 123990662 123990815 -58424427 - MIR SINE MIR -31 177 23 188 253 169 12 chr6 123991973 123992056 -58423186 + L3 LINE CR1 1217 1312 -265 719 310 5 0 chr6 123993009 123993196 -58422046 + MIR SINE MIR 2 189 -73 453 249 76 61 chr6 123993354 123993551 -58421691 - MER63A DNA MER1_type -10 200 1 225 291 177 0 chr6 123993569 123993648 -58421594 - L2 LINE L2 0 3272 3180 316 247 35 12 chr6 123993842 123993927 -58421315 + L2 LINE L2 3186 3272 0 376 327 40 7 chr6 123994167 123994317 -58420925 - MIR SINE MIR -31 231 77 1866 44 0 4 chr6 123994451 123994720 -58420522 - L1PA6 LINE L1 -657 5497 5230 5108 58 11 3 chr6 123994720 123995370 -58419872 + L1PA6 LINE L1 5497 6154 0 223 250 226 54 chr6 123995913 123996081 -58419161 - MIR SINE MIR 0 262 66 234 0 0 0 chr6 123996588 123996614 -58418628 + (A)n Simple_repeat Simple_repeat 1 26 0 12851 205 44 9 chr6 123998239 124004731 -58410511 - L1PB1 LINE L1 -1 6866 6 2032 146 26 98 chr6 124004739 124005206 -58410036 + Tigger2a DNA MER2_type 2 434 0 318 247 24 12 chr6 124005486 124005571 -58409671 + L1MC4 LINE L1 6618 6703 -1339 2682 157 109 47 chr6 124007415 124008091 -58407151 - LTR8A LTR ERV1 -9 718 1 929 233 70 33 chr6 124008387 124008687 -58406555 - L1MD2 LINE L1 -35 6324 6014 2031 126 7 7 chr6 124008730 124009016 -58406226 + AluSx SINE Alu 1 286 -26 757 316 8 28 chr6 124009017 124009264 -58405978 - MIR SINE MIR 0 262 21 356 276 70 64 chr6 124059435 124059779 -58355463 + L1ME2 LINE L1 1372 1717 -4679 263 298 130 28 chr6 124059789 124060004 -58355238 + L1ME2 LINE L1 1767 2003 -4393 934 195 4 6 chr6 124060039 124060241 -58355001 + L1MB8 LINE L1 5626 5834 -344 2202 271 74 36 chr6 124060262 124060468 -58354774 + L1ME2 LINE L1 4021 4218 -1997 2284 81 0 0 chr6 124060468 124060774 -58354468 + AluY SINE Alu 1 306 0 2202 271 74 36 chr6 124060774 124061661 -58353581 + L1ME2 LINE L1 4218 5180 -1035 2164 98 7 0 chr6 124061661 124061948 -58353294 - AluSc SINE Alu 0 309 21 2202 271 74 36 chr6 124061948 124062223 -58353019 + L1ME2 LINE L1 5180 5443 -772 784 203 0 0 chr6 124062256 124062404 -58352838 + FRAM SINE Alu 18 165 -11 338 197 42 0 chr6 124062411 124062482 -58352760 + L1ME2 LINE L1 5439 5512 -721 711 288 81 47 chr6 124062483 124062952 -58352290 + L1ME2 LINE L1 5739 6223 -10 25 0 0 0 chr6 124063121 124063146 -58352096 + AT_rich Low_complexity Low_complexity 1 25 0 1934 143 13 0 chr6 124063555 124063856 -58351386 - AluSc SINE Alu -2 307 3 356 367 67 39 chr6 124063998 124064608 -58350634 + L2 LINE L2 2232 2858 -456 1647 252 69 53 chr6 124064610 124065173 -58350069 + MLT1E2 LTR MaLR 1 572 -54 5065 180 19 3 chr6 124065174 124066464 -58348778 + L1PA16 LINE L1 4839 6150 -16 421 104 15 0 chr6 124066476 124066543 -58348699 + MLT1D LTR MaLR 438 505 0 280 299 65 9 chr6 124066835 124066942 -58348300 + L2 LINE L2 3200 3312 -1 10116 211 53 25 chr6 124069397 124072150 -58343092 + L1MA7 LINE L1 2442 5271 -875 321 212 47 0 chr6 124072151 124072236 -58343006 - Tigger5 DNA MER2_type -2 2321 2233 233 288 0 14 chr6 124072282 124072355 -58342887 - Tigger5 DNA MER2_type -1 2322 2251 4979 187 24 14 chr6 124072377 124073390 -58341852 + L1MA7 LINE L1 5267 6289 -2 236 190 58 124 chr6 124073600 124073721 -58341521 - MIR SINE MIR -46 216 104 1294 190 82 56 chr6 124074772 124075302 -58339940 - MER67C LTR ERV1 0 514 1 182 344 48 70 chr6 124075352 124075538 -58339704 + L2 LINE L2 2069 2250 -1064 22 56 0 0 chr6 124075663 124075699 -58339543 + AT_rich Low_complexity Low_complexity 1 36 0 40478 72 4 1 chr6 124075809 124081947 -58333295 + L1PA5 LINE L1 1 6152 -2 758 211 120 38 chr6 124082290 124082499 -58332743 + LTR54 LTR ERV1 1 226 -284 599 136 144 0 chr6 124082515 124082633 -58332609 - L1MC3 LINE L1 -20 7765 7631 2570 141 39 42 chr6 124082644 124083162 -58332080 - L1MA4A LINE L1 -12 6291 5776 269 288 5 38 chr6 124083177 124083361 -58331881 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 * 453 243 0 12 chr6 124083255 124083424 -58331818 + (TA)n Simple_repeat Simple_repeat 1 167 0 482 150 124 0 chr6 124083444 124083557 -58331685 + LTR54 LTR ERV1 382 508 -2 1036 122 43 0 chr6 124083615 124083779 -58331463 - L1MA4A LINE L1 -516 5787 5617 2182 206 20 24 chr6 124083784 124084278 -58330964 + L1 LINE L1 2529 3020 -3126 1211 191 34 24 chr6 124084285 124084578 -58330664 + LTR54 LTR ERV1 213 508 -2 602 276 24 29 chr6 124084888 124085098 -58330144 - MER3 DNA MER1_type 0 209 1 232 267 67 0 chr6 124085194 124085254 -58329988 - L2 LINE L2 -37 3276 3213 1534 90 59 0 chr6 124085357 124085579 -58329663 - LTR12 LTR ERV1 0 714 480 348 291 8 0 chr6 124085579 124085696 -58329546 - LTR30 LTR ERV1 -79 643 526 1302 126 128 10 chr6 124085696 124086047 -58329195 - LTR12 LTR ERV1 -432 2006 1 77373 7 9 8 chr6 124086047 124095129 -58320113 - HERV9 LTR ERV1 0 1683 1 235 65 52 104 chr6 124095262 124095339 -58319903 + A-rich Low_complexity Low_complexity 3 75 0 560 296 55 24 chr6 124095613 124095992 -58319250 + L1ME4a LINE L1 5492 5882 -239 1713 217 53 14 chr6 124096033 124096448 -58318794 + MER90 LTR ERV1 182 612 -2 302 78 0 20 chr6 124096455 124096506 -58318736 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 24 32 0 0 chr6 124096593 124096624 -58318618 + AT_rich Low_complexity Low_complexity 1 31 0 816 172 15 39 chr6 124096851 124097054 -58318188 - L1MA6 LINE L1 -1 6299 6102 21 36 0 0 chr6 124097161 124097189 -58318053 + AT_rich Low_complexity Low_complexity 1 28 0 985 164 24 0 chr6 124097407 124097620 -58317622 - L1MA8 LINE L1 -4 6287 6070 23 0 0 0 chr6 124097783 124097806 -58317436 + AT_rich Low_complexity Low_complexity 1 23 0 432 291 139 18 chr6 124098010 124098175 -58317067 + MIR SINE MIR 24 208 -54 22 56 0 0 chr6 124098287 124098323 -58316919 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr6 124098387 124098421 -58316821 + AT_rich Low_complexity Low_complexity 1 34 0 612 50 0 0 chr6 124098475 124098555 -58316687 + (TG)n Simple_repeat Simple_repeat 2 81 0 24 0 0 0 chr6 124098764 124098788 -58316454 + AT_rich Low_complexity Low_complexity 1 24 0 14038 157 41 18 chr6 124099396 124103799 -58311443 + L1MA3 LINE L1 17 4549 -3016 43174 47 1 3 chr6 124103800 124109968 -58305274 + L1PA4 LINE L1 3 6155 0 10455 174 15 18 chr6 124109977 124111450 -58303792 + L1MA3 LINE L1 4551 6014 -1710 1955 188 28 39 chr6 124111450 124111840 -58303402 + MSTB LTR MaLR 1 388 -38 2264 85 4 0 chr6 124111840 124112157 -58303085 - AluSg SINE Alu 0 318 1 1955 188 28 39 chr6 124112157 124112196 -58303046 + MSTB LTR MaLR 388 426 0 10455 174 15 18 chr6 124112196 124113239 -58302003 + L1MA3 LINE L1 6014 7059 -665 461 206 0 0 chr6 124113244 124113336 -58301906 + L1 LINE L1 4151 4242 -1904 3620 112 9 77 chr6 124113336 124114013 -58301229 + L1MA3 LINE L1 7094 7724 0 23 68 0 0 chr6 124114331 124114375 -58300867 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr6 124114609 124114639 -58300603 + AT_rich Low_complexity Low_complexity 1 30 0 1114 217 115 0 chr6 124115405 124115709 -58299533 + MER58B DNA MER1_type 1 339 -2 4334 237 92 43 chr6 124116230 124117591 -58297651 + L1MDa LINE L1 20 1447 -5093 3697 213 60 8 chr6 124117591 124118470 -58296772 - L1MC3 LINE L1 -995 6790 5866 2962 247 87 41 chr6 124118495 124119101 -58296141 - L1MCc LINE L1 -4095 2846 2269 279 0 0 0 chr6 124119101 124119132 -58296110 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2962 247 87 41 chr6 124119132 124120846 -58294396 - L1MCc LINE L1 -4672 2269 5 1594 266 32 10 chr6 124120846 124121443 -58293799 + L1MD1 LINE L1 4686 5295 -851 866 144 0 20 chr6 124121444 124121590 -58293652 + AluJb SINE Alu 170 312 0 3948 189 52 20 chr6 124121590 124122520 -58292722 + L1MD1 LINE L1 5283 6241 -1 23 33 0 0 chr6 124122534 124122564 -58292678 + AT_rich Low_complexity Low_complexity 1 30 0 260 185 0 31 chr6 124122911 124122976 -58292266 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 914 207 22 11 chr6 124123525 124123704 -58291538 - MER5A DNA MER1_type 0 189 9 2218 150 3 6 chr6 124125169 124125529 -58289713 + THE1C LTR MaLR 15 373 -2 9545 131 29 42 chr6 124125529 124127120 -58288122 + THE1C-int LTR MaLR 4 1574 -6 2476 122 3 11 chr6 124127127 124127505 -58287737 + THE1C LTR MaLR 1 375 0 267 305 32 52 chr6 124128431 124128585 -58286657 + MLT1G LTR MaLR 82 232 -317 662 234 45 7 chr6 124128606 124128760 -58286482 + MLT1G LTR MaLR 407 566 -24 21 36 0 0 chr6 124129592 124129620 -58285622 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 124130034 124130066 -58285176 + AT_rich Low_complexity Low_complexity 1 32 0 469 244 10 104 chr6 124130282 124130475 -58284767 - L2 LINE L2 -22 3291 3117 395 195 23 46 chr6 124130842 124130929 -58284313 + MIR SINE MIR 16 100 -162 938 335 57 24 chr6 124131197 124131651 -58283591 - L2 LINE L2 -1 3312 2844 1358 282 98 80 chr6 124131651 124131769 -58283473 + MER45C DNA AcHobo 11 125 -1456 2378 59 0 0 chr6 124131769 124132055 -58283187 - AluY SINE Alu -25 286 1 1358 282 98 80 chr6 124132055 124132791 -58282451 + MER45C DNA AcHobo 125 939 -14 316 71 0 0 chr6 124132792 124132834 -58282408 + MADE1 DNA Mariner 2 43 -37 277 274 21 0 chr6 124133051 124133146 -58282096 + L1ME3 LINE L1 6064 6160 -2 2052 194 44 0 chr6 124133402 124133815 -58281427 + MSTB1 LTR MaLR 1 431 -1 489 322 143 34 chr6 124134269 124134627 -58280615 + L2 LINE L2 2558 2875 -438 1848 173 64 9 chr6 124134627 124134973 -58280269 - MLT1A1 LTR MaLR 0 365 1 489 322 143 34 chr6 124134973 124135062 -58280180 + L2 LINE L2 2875 2953 -360 1614 190 7 7 chr6 124135062 124135346 -58279896 - AluJo SINE Alu -5 307 24 489 322 143 34 chr6 124135346 124135568 -58279674 + L2 LINE L2 2953 3305 -8 1738 169 0 17 chr6 124135670 124135966 -58279276 - AluJo SINE Alu -21 291 1 951 193 91 12 chr6 124135967 124136253 -58278989 - MER33 DNA MER1_type -31 293 1 468 297 172 16 chr6 124136841 124137033 -58278209 + MER20B DNA MER1_type 1 222 -561 858 182 86 21 chr6 124137086 124137273 -58277969 - AluJo SINE Alu -27 285 87 285 270 58 95 chr6 124138603 124138792 -58276450 - MIR3 SINE MIR 0 208 27 21 36 0 0 chr6 124139029 124139057 -58276185 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 124139140 124139162 -58276080 + AT_rich Low_complexity Low_complexity 1 22 0 2387 66 30 7 chr6 124139451 124139755 -58275487 + AluY SINE Alu 1 311 0 2140 179 67 9 chr6 124139769 124139911 -58275331 - L1MA9 LINE L1 0 6312 6180 273 75 0 0 chr6 124139911 124139951 -58275291 + (TG)n Simple_repeat Simple_repeat 1 40 0 2140 179 67 9 chr6 124139951 124140272 -58274970 - L1MA9 LINE L1 -132 6180 5822 277 386 0 0 chr6 124141932 124142020 -58273222 + L2 LINE L2 3182 3269 -3 590 315 54 11 chr6 124142025 124142304 -58272938 - MER110 LTR ERV1 -34 457 167 616 233 111 17 chr6 124143828 124144000 -58271242 + MER5A DNA MER1_type 2 189 0 232 312 48 79 chr6 124144368 124144557 -58270685 + MER5A DNA MER1_type 1 183 -6 246 32 0 0 chr6 124145626 124145657 -58269585 + (TG)n Simple_repeat Simple_repeat 2 32 0 370 257 58 47 chr6 124145818 124145971 -58269271 - MIR SINE MIR -3 259 102 245 327 50 10 chr6 124146516 124146617 -58268625 + MIR SINE MIR 86 190 -72 4272 56 6 0 chr6 124148217 124148753 -58266489 + L1PA5 LINE L1 5613 6151 -3 21 0 0 0 chr6 124148934 124148955 -58266287 + AT_rich Low_complexity Low_complexity 1 21 0 527 311 76 86 chr6 124149330 124149465 -58265777 + L1MEd LINE L1 549 684 -5435 399 41 0 0 chr6 124149465 124149514 -58265728 + (CA)n Simple_repeat Simple_repeat 2 50 0 527 311 76 86 chr6 124149514 124150086 -58265156 + L1MEd LINE L1 684 1249 -4870 389 293 84 58 chr6 124150124 124150493 -58264749 + L1MEd LINE L1 1357 1869 -4261 1498 157 94 4 chr6 124150540 124150807 -58264435 + AluSg SINE Alu 1 291 -19 29 0 0 0 chr6 124150807 124150836 -58264406 + AT_rich Low_complexity Low_complexity 1 29 0 8410 96 5 7 chr6 124151309 124152530 -58262712 - L1PA7 LINE L1 -1694 4452 3234 6472 61 6 45 chr6 124152530 124153558 -58261684 + L1PA7 LINE L1 4465 5447 -707 2319 95 0 19 chr6 124153558 124153873 -58261369 + AluY SINE Alu 1 309 -2 6472 61 6 45 chr6 124153873 124154554 -58260688 + L1PA7 LINE L1 5447 6153 -1 21 57 0 0 chr6 124154624 124154659 -58260583 + AT_rich Low_complexity Low_complexity 1 35 0 4935 192 61 9 chr6 124154986 124155585 -58259657 - L1MA6 LINE L1 0 6305 5739 423 0 0 0 chr6 124155585 124155632 -58259610 + (TG)n Simple_repeat Simple_repeat 2 48 0 4935 192 61 9 chr6 124155632 124156934 -58258308 - L1MA6 LINE L1 -566 5739 4273 1319 178 10 82 chr6 124156949 124157115 -58258127 - AluJo SINE Alu -30 282 144 2805 3 0 3 chr6 124157115 124157420 -58257822 + AluYa5 SINE Alu 1 304 -7 1319 178 10 82 chr6 124157420 124157546 -58257696 - AluJo SINE Alu -168 144 11 8434 210 36 8 chr6 124157560 124159561 -58255681 - L1MA6 LINE L1 -1819 4327 2271 21 57 0 0 chr6 124159590 124159625 -58255617 + AT_rich Low_complexity Low_complexity 1 35 0 6278 158 21 17 chr6 124159625 124159976 -58255266 - L1PB1 LINE L1 -3 6864 6516 471 35 0 0 chr6 124159976 124160033 -58255209 + (CA)n Simple_repeat Simple_repeat 2 58 0 6278 158 21 17 chr6 124160033 124161844 -58253398 - L1PB1 LINE L1 -351 6516 4694 3374 51 26 0 chr6 124161838 124162267 -58252975 - L1P3 LINE L1 -418 5736 5297 * 2695 84 0 5 chr6 124162267 124162635 -58252607 + L1PA7 LINE L1 5788 6154 0 3311 233 9 2 chr6 124162655 124163444 -58251798 - L1PB1 LINE L1 -2160 4702 3909 * 5757 147 87 21 chr6 124163442 124164785 -58250457 - L1PB1 LINE L1 -5290 1573 1 845 206 56 8 chr6 124164779 124165058 -58250184 - L1 LINE L1 -3856 3709 3422 * 1046 129 0 11 chr6 124165090 124165268 -58249974 + (TTCC)n Simple_repeat Simple_repeat 4 179 0 1383 186 0 43 chr6 124165268 124165526 -58249716 - AluSx SINE Alu -40 272 26 2100 252 46 10 chr6 124165532 124166346 -58248896 - L1 LINE L1 -4135 3431 2587 1292 340 68 20 chr6 124166391 124166993 -58248249 - L1 LINE L1 -6155 1411 781 240 228 35 0 chr6 124168088 124168145 -58247097 + MLT1I LTR MaLR 16 74 -335 336 269 121 21 chr6 124168212 124168353 -58246889 + MLT1I LTR MaLR 249 403 -6 24 77 0 0 chr6 124168769 124168821 -58246421 + AT_rich Low_complexity Low_complexity 1 52 0 1957 120 3 54 chr6 124168840 124169157 -58246085 - AluSx SINE Alu -11 301 1 710 248 39 0 chr6 124169371 124169524 -58245718 + MIR SINE MIR 8 166 -96 1356 299 51 57 chr6 124169539 124170678 -58244564 + HAL1 LINE L1 1370 2501 -6 2039 137 3 7 chr6 124170783 124171083 -58244159 + AluSq SINE Alu 2 300 -13 27 29 0 0 chr6 124171091 124171125 -58244117 + AT_rich Low_complexity Low_complexity 1 34 0 25 65 0 0 chr6 124171304 124171350 -58243892 + AT_rich Low_complexity Low_complexity 1 46 0 713 192 8 0 chr6 124171656 124171781 -58243461 - FLAM_A SINE Alu -7 126 1 181 57 75 19 chr6 124172106 124172159 -58243083 + (TA)n Simple_repeat Simple_repeat 2 57 0 198 251 50 10 chr6 124173020 124173095 -58242147 - MIR SINE MIR -69 139 79 438 241 111 49 chr6 124173181 124173343 -58241899 + MER5B DNA MER1_type 1 172 -6 545 239 63 19 chr6 124173576 124173735 -58241507 - MLT1I LTR MaLR 0 409 244 21 57 0 0 chr6 124275846 124275881 -58139361 + AT_rich Low_complexity Low_complexity 1 35 0 455 320 27 7 chr6 124277260 124277410 -58137832 - MIR SINE MIR -109 153 1 222 0 25 50 chr6 124278024 124278064 -58137178 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 31 0 0 0 chr6 124278517 124278548 -58136694 + AT_rich Low_complexity Low_complexity 1 31 0 6956 118 21 15 chr6 124278548 124279904 -58135338 - L1MA1 LINE L1 -7 6295 4932 1279 125 10 22 chr6 124279904 124280205 -58135037 + THE1C LTR MaLR 1 375 0 6516 143 67 10 chr6 124280205 124281265 -58133977 + THE1C-int LTR MaLR 1 1120 -460 20317 167 22 28 chr6 124281266 124282638 -58132604 - L1 LINE L1 -3112 4453 3073 1968 143 3 3 chr6 124282638 124282925 -58132317 - AluSx SINE Alu -25 287 1 20317 167 22 28 chr6 124282925 124286024 -58129218 - L1 LINE L1 -4492 3073 13 186 310 60 20 chr6 124286674 124286774 -58128468 - L2 LINE L2 -169 3103 3000 22 88 0 0 chr6 124287367 124287424 -58127818 + AT_rich Low_complexity Low_complexity 1 57 0 208 339 147 0 chr6 124288521 124288630 -58126612 - MIR SINE MIR -64 144 20 1684 181 7 3 chr6 124288737 124289040 -58126202 - AluJo SINE Alu -8 304 1 208 289 19 0 chr6 124289122 124289174 -58126068 - L2 LINE L2 -15 3298 3246 227 265 15 15 chr6 124289492 124289560 -58125682 + MER94 DNA DNA 59 126 -8 195 69 0 0 chr6 124290058 124290087 -58125155 + (T)n Simple_repeat Simple_repeat 1 29 0 180 289 11 56 chr6 124290111 124290201 -58125041 + L2 LINE L2 2898 2983 -289 1077 144 70 0 chr6 124290324 124290511 -58124731 + L1PA11 LINE L1 5974 6173 -1 1934 174 14 6 chr6 124290627 124290972 -58124270 - MER7A DNA MER2_type 0 346 1 234 0 0 0 chr6 124291348 124291374 -58123868 + (T)n Simple_repeat Simple_repeat 1 26 0 36630 96 9 13 chr6 124291687 124297864 -58117378 - L1PA6 LINE L1 -1 6153 11 182 91 30 0 chr6 124298120 124298153 -58117089 + CT-rich Low_complexity Low_complexity 3 36 0 620 187 6 54 chr6 124298203 124298369 -58116873 + L1ME1 LINE L1 5707 5864 -302 2215 105 0 7 chr6 124298393 124298688 -58116554 + AluY SINE Alu 1 293 -18 510 292 90 46 chr6 124298691 124299170 -58116072 + L1MDa LINE L1 1565 2064 -4476 21 0 0 0 chr6 124299498 124299519 -58115723 + AT_rich Low_complexity Low_complexity 1 21 0 2407 95 0 0 chr6 124299960 124300265 -58114977 + AluSg SINE Alu 1 305 -5 26 0 0 0 chr6 124300805 124300831 -58114411 + AT_rich Low_complexity Low_complexity 1 26 0 402 255 113 0 chr6 124302903 124303009 -58112233 + MIR SINE MIR 29 146 -116 1981 185 90 43 chr6 124303010 124303501 -58111741 - MER67D LTR ERV1 0 514 1 2037 244 62 6 chr6 124303790 124304340 -58110902 - MER119 DNA MER1_type 0 583 3 2029 191 64 71 chr6 124304542 124305092 -58110150 + MLT2B3 LTR ERVL 1 546 -8 2471 156 21 21 chr6 124306662 124307086 -58108156 + MSTB LTR MaLR 1 424 -2 245 236 226 38 chr6 124307554 124307660 -58107582 - L2 LINE L2 0 3313 3188 2394 244 79 29 chr6 124307688 124308610 -58106632 + Zaphod DNA AcHobo 42 1009 -3022 807 217 155 17 chr6 124308588 124308943 -58106299 + Zaphod DNA AcHobo 3598 4001 -30 * 2148 143 22 22 chr6 124308964 124309328 -58105914 - THE1B LTR MaLR 0 364 1 10788 104 7 37 chr6 124309328 124309760 -58105482 - THE1B-int LTR MaLR 0 1580 1137 4205 160 67 96 chr6 124309760 124310863 -58104379 - MER11C LTR ERVK 0 1071 1 10788 104 7 37 chr6 124310863 124312058 -58103184 - THE1B-int LTR MaLR -443 1137 1 2145 140 22 25 chr6 124312058 124312423 -58102819 - THE1B LTR MaLR 0 364 1 205 171 0 0 chr6 124312423 124312458 -58102784 + (ACATG)n Simple_repeat Simple_repeat 3 37 0 394 315 87 14 chr6 124313078 124313297 -58101945 + MIR SINE MIR 6 240 -22 22 0 0 0 chr6 124313323 124313345 -58101897 + AT_rich Low_complexity Low_complexity 1 22 0 688 277 24 0 chr6 124314173 124314339 -58100903 + MLT1H LTR MaLR 78 247 -302 41 0 0 0 chr6 124314439 124314480 -58100762 + AT_rich Low_complexity Low_complexity 1 41 0 2014 119 25 0 chr6 124314480 124314766 -58100476 - AluSx SINE Alu -19 293 1 622 143 0 0 chr6 124314771 124314876 -58100366 - L1MA1 LINE L1 0 6302 6198 215 189 19 0 chr6 124315006 124315059 -58100183 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 278 235 25 12 chr6 124315063 124315144 -58100098 + (CATA)n Simple_repeat Simple_repeat 3 84 0 356 316 98 41 chr6 124315190 124315261 -58099981 - L1MC4a LINE L1 -1882 5926 5860 1258 190 106 6 chr6 124315261 124315572 -58099670 - MER2 DNA MER2_type 0 344 3 356 316 98 41 chr6 124315572 124315817 -58099425 - L1MC4a LINE L1 -1948 5860 5592 289 349 83 44 chr6 124315878 124316265 -58098977 + LTR67 LTR ERVL 76 477 -80 24 32 0 0 chr6 124316671 124316702 -58098540 + AT_rich Low_complexity Low_complexity 1 31 0 347 255 31 92 chr6 124316707 124317033 -58098209 - L1MC4a LINE L1 -914 5232 4927 1062 240 117 30 chr6 124317034 124317398 -58097844 - LTR40b LTR ERVL 0 462 69 263 321 41 15 chr6 124317681 124317877 -58097365 - L1MC4a LINE L1 -1457 4689 4489 1721 165 32 40 chr6 124317912 124317984 -58097258 + THE1C LTR MaLR 3 74 -301 2006 135 44 44 chr6 124317984 124318348 -58096894 - THE1B LTR MaLR 0 364 1 1721 165 32 40 chr6 124318348 124318651 -58096591 + THE1C LTR MaLR 74 375 0 10169 121 33 8 chr6 124318651 124320192 -58095050 + THE1C-int LTR MaLR 1 1580 0 1858 157 32 32 chr6 124320192 124320567 -58094675 + THE1C LTR MaLR 1 375 0 206 250 10 40 chr6 124320589 124320689 -58094553 + T-rich Low_complexity Low_complexity 3 99 0 1953 166 0 3 chr6 124320694 124320995 -58094247 + AluJb SINE Alu 1 300 -12 1983 192 81 2 chr6 124321243 124321638 -58093604 + MSTB LTR MaLR 1 426 0 1456 209 10 14 chr6 124321834 124322130 -58093112 + AluJo SINE Alu 1 295 -17 274 321 28 0 chr6 124322130 124322236 -58093006 - HAL1 LINE L1 -921 1586 1478 250 236 106 86 chr6 124322610 124322902 -58092340 - L1MEd LINE L1 -4926 1193 896 468 247 54 24 chr6 124323643 124323809 -58091433 + MIR SINE MIR 91 261 -1 367 349 59 34 chr6 124325383 124325621 -58089621 - L3 LINE CR1 -78 1499 1256 201 94 0 0 chr6 124325638 124325670 -58089572 + (CA)n Simple_repeat Simple_repeat 1 32 0 1382 185 13 43 chr6 124326154 124326456 -58088786 - AluJo SINE Alu -19 293 1 287 326 168 36 chr6 124327172 124327583 -58087659 + MLT1L LTR MaLR 3 467 -148 196 342 92 0 chr6 124327707 124327783 -58087459 + L2 LINE L2 3180 3262 -10 23 0 0 0 chr6 124329346 124329369 -58085873 + AT_rich Low_complexity Low_complexity 1 23 0 28862 127 12 9 chr6 124332492 124338920 -58076322 + L1PA8 LINE L1 5 6487 0 236 265 61 20 chr6 124339453 124339551 -58075691 + MLT1I LTR MaLR 43 144 -265 264 195 182 0 chr6 124339782 124339859 -58075383 + MLT1I LTR MaLR 318 408 -1 1327 203 60 65 chr6 124340842 124341226 -58074016 + MLT1B LTR MaLR 5 386 -4 27 62 0 0 chr6 124341254 124341302 -58073940 + AT_rich Low_complexity Low_complexity 1 48 0 467 266 18 78 chr6 124341652 124341870 -58073372 - L2 LINE L2 -10 3303 3099 263 294 34 73 chr6 124342008 124342185 -58073057 - L2 LINE L2 -2387 927 758 22 0 0 0 chr6 124343628 124343650 -58071592 + AT_rich Low_complexity Low_complexity 1 22 0 413 201 11 7 chr6 124343824 124343916 -58071326 + AluS SINE Alu 1 67 -241 2319 36 0 11 chr6 124345205 124345482 -58069760 - AluY SINE Alu 0 311 38 2377 117 0 0 chr6 124346416 124346767 -58068475 - L1PB1 LINE L1 -9 6142 5792 306 0 0 0 chr6 124346768 124346802 -58068440 + (TG)n Simple_repeat Simple_repeat 2 35 0 286 116 70 23 chr6 124346811 124346983 -58068259 + (TA)n Simple_repeat Simple_repeat 1 180 0 4008 167 6 3 chr6 124347004 124348302 -58066940 - L1PB1 LINE L1 -360 5791 4489 505 129 17 17 chr6 124348358 124348453 -58066789 + (CATA)n Simple_repeat Simple_repeat 1 98 -18 2389 129 22 0 chr6 124348453 124348809 -58066433 + THE1B LTR MaLR 1 364 0 505 129 17 17 chr6 124348809 124348829 -58066413 + (CATA)n Simple_repeat Simple_repeat 97 116 0 207 0 0 0 chr6 124348829 124348852 -58066390 + (TG)n Simple_repeat Simple_repeat 2 24 0 4783 184 33 67 chr6 124349921 124351007 -58064235 - L1MC1 LINE L1 -1 6332 5308 1829 108 71 11 chr6 124351007 124351304 -58063938 - AluSc SINE Alu 0 309 1 4783 184 33 67 chr6 124351304 124352004 -58063238 - L1MC1 LINE L1 -1025 5308 4586 254 219 52 83 chr6 124354804 124354900 -58060342 - L2 LINE L2 0 3313 3221 1502 214 95 26 chr6 124356256 124356686 -58058556 + MLT1C LTR MaLR 8 467 0 345 322 114 35 chr6 124357613 124357840 -58057402 - MIR SINE MIR -5 257 13 21 0 0 0 chr6 124358461 124358482 -58056760 + AT_rich Low_complexity Low_complexity 1 21 0 202 338 131 7 chr6 124360009 124360154 -58055088 - L2 LINE L2 -5 3308 3146 24 0 0 0 chr6 124360870 124360894 -58054348 + AT_rich Low_complexity Low_complexity 1 24 0 24081 165 21 26 chr6 124361421 124367827 -58047415 + L1PA10 LINE L1 3 6477 -6 24 32 0 0 chr6 124369136 124369167 -58046075 + AT_rich Low_complexity Low_complexity 1 31 0 340 307 43 14 chr6 124369292 124369432 -58045810 + MER117 DNA MER1_type 1 144 -53 24 0 0 0 chr6 124369873 124369897 -58045345 + AT_rich Low_complexity Low_complexity 1 24 0 306 125 0 0 chr6 124370161 124370209 -58045033 - MLT2D LTR ERVL 0 414 367 183 204 0 0 chr6 124370209 124370253 -58044989 + (TG)n Simple_repeat Simple_repeat 2 45 0 392 224 0 0 chr6 124370253 124370329 -58044913 - MLT2D LTR ERVL -40 374 299 629 184 29 7 chr6 124370339 124370475 -58044767 - MLT2D LTR ERVL -275 139 1 1113 295 76 60 chr6 124370631 124371211 -58044031 + MLT1G LTR MaLR 7 590 0 182 283 0 0 chr6 124371815 124371861 -58043381 + L2 LINE L2 3187 3232 -81 291 28 0 0 chr6 124372555 124372591 -58042651 + (TG)n Simple_repeat Simple_repeat 1 36 0 346 246 238 8 chr6 124372915 124373037 -58042205 - MER45C DNA AcHobo -9 944 795 419 244 33 0 chr6 124373107 124373197 -58042045 - MER45C DNA AcHobo -154 799 707 1005 209 0 27 chr6 124373272 124373459 -58041783 - MER45C DNA AcHobo -771 182 1 406 267 62 7 chr6 124373655 124373860 -58041382 + MLT2F LTR ERVL 1 262 -401 * 502 200 200 0 chr6 124373859 124373955 -58041287 + MLT2F LTR ERVL 508 584 -79 441 0 0 0 chr6 124373955 124374004 -58041238 + (CA)n Simple_repeat Simple_repeat 2 50 0 502 200 200 0 chr6 124374004 124374037 -58041205 + MLT2F LTR ERVL 583 663 0 25 51 0 0 chr6 124375511 124375550 -58039692 + AT_rich Low_complexity Low_complexity 1 39 0 11840 141 38 76 chr6 124375605 124376680 -58038562 + Tigger1 DNA MER2_type 91 1205 -1213 801 138 26 0 chr6 124376680 124376796 -58038446 + AluJb SINE Alu 1 119 -193 11840 141 38 76 chr6 124376796 124378025 -58037217 + Tigger1 DNA MER2_type 1205 2418 0 210 159 48 32 chr6 124379614 124379677 -58035565 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 211 302 134 54 chr6 124380076 124380225 -58035017 - L2 LINE L2 -245 3027 2867 5279 176 12 9 chr6 124380356 124380915 -58034327 + L1PA16 LINE L1 4794 5350 -816 2065 96 0 0 chr6 124380915 124381175 -58034067 + AluSg SINE Alu 36 295 -15 5279 176 12 9 chr6 124381175 124381980 -58033262 + L1PA16 LINE L1 5350 6165 -1 8114 191 21 16 chr6 124382686 124385269 -58029973 + L1PA16 LINE L1 3479 6070 -96 13717 199 13 9 chr6 124435269 124438595 -57976647 - L1P5 LINE L1 -528 5623 2285 1568 132 164 0 chr6 124438594 124438933 -57976309 + L1P5 LINE L1 2608 3000 -3862 * 26 30 0 0 chr6 124439176 124439209 -57976033 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr6 124440709 124440747 -57974495 + AT_rich Low_complexity Low_complexity 1 38 0 226 311 2 0 chr6 124440888 124440956 -57974286 - L2 LINE L2 -13 3300 3191 255 316 0 42 chr6 124441614 124441709 -57973533 - MIR3 SINE MIR -46 162 72 1248 164 13 21 chr6 124442723 124442961 -57972281 + L1PA16 LINE L1 5931 6166 0 24 32 0 0 chr6 124443645 124443676 -57971566 + AT_rich Low_complexity Low_complexity 1 31 0 27 62 0 0 chr6 124444540 124444588 -57970654 + AT_rich Low_complexity Low_complexity 1 48 0 205 156 0 0 chr6 124445286 124445318 -57969924 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 670 276 88 44 chr6 124445318 124445637 -57969605 - L2 LINE L2 0 3313 2981 444 235 20 0 chr6 124445677 124445779 -57969463 + MER5A DNA MER1_type 9 112 -77 491 279 42 88 chr6 124447904 124448212 -57967030 - MER102b DNA MER1_type 0 341 48 353 316 53 20 chr6 124449103 124449255 -57965987 + LTR67 LTR ERVL 401 557 0 354 45 0 0 chr6 124449429 124449473 -57965769 + (TTTTG)n Simple_repeat Simple_repeat 5 48 0 188 146 0 21 chr6 124450520 124450568 -57964674 + (CA)n Simple_repeat Simple_repeat 2 48 0 3658 301 84 21 chr6 124450613 124452282 -57962960 - L2 LINE L2 -232 3081 1314 1338 256 80 54 chr6 124452698 124453368 -57961874 + L1ME LINE L1 4423 5116 -1046 2395 68 0 6 chr6 124453368 124453679 -57961563 - AluY SINE Alu -2 309 1 1338 256 80 54 chr6 124453679 124454075 -57961167 + L1ME LINE L1 5116 5500 -662 182 114 0 29 chr6 124454220 124454255 -57960987 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 233 381 16 16 chr6 124454261 124454387 -57960855 + MIR SINE MIR 28 153 -109 222 288 0 15 chr6 124455035 124455101 -57960141 - MIR SINE MIR -138 124 60 576 265 49 19 chr6 124455397 124455559 -57959683 + MIR SINE MIR 30 196 -66 260 241 65 153 chr6 124457105 124457454 -57957788 - L2 LINE L2 -749 2565 2248 386 338 149 0 chr6 124457454 124457608 -57957634 - MER5A DNA MER1_type -1 188 12 2205 137 0 0 chr6 124457843 124458149 -57957093 + AluSx SINE Alu 1 306 -6 330 332 68 26 chr6 124460133 124460323 -57954919 - MIR3 SINE MIR -7 201 4 592 231 35 24 chr6 124460879 124461048 -57954194 + MER5B DNA MER1_type 1 171 -7 637 138 9 9 chr6 124462387 124462503 -57952739 + L1MA5 LINE L1 6180 6295 -5 365 315 47 0 chr6 124462770 124462897 -57952345 + L2 LINE L2 3180 3312 -1 1462 199 16 29 chr6 124462925 124463232 -57952010 + AluJo SINE Alu 10 312 0 1238 176 85 80 chr6 124463384 124463538 -57951704 - L1MA10 LINE L1 -2 6332 6180 357 24 0 0 chr6 124463538 124463580 -57951662 + (TG)n Simple_repeat Simple_repeat 1 42 0 1238 176 85 80 chr6 124463580 124463777 -57951465 - L1MA10 LINE L1 -154 6180 5979 1857 237 44 102 chr6 124463817 124464897 -57950345 - L1ME1 LINE L1 -3 6163 5146 797 221 13 0 chr6 124466506 124466660 -57948582 + FRAM SINE Alu 1 156 -10 426 250 9 18 chr6 124467336 124467448 -57947794 + MIR SINE MIR 125 235 -27 430 344 53 20 chr6 124467640 124467884 -57947358 - MIR SINE MIR -10 252 1 604 250 49 24 chr6 124468114 124468278 -57946964 - MER20 DNA MER1_type -51 168 1 872 266 18 13 chr6 124468953 124469182 -57946060 + MIR SINE MIR 31 260 -2 392 328 29 23 chr6 124469186 124469360 -57945882 - MIR SINE MIR -2 260 86 1436 174 6 118 chr6 124469743 124470099 -57945143 + MLT1B LTR MaLR 3 318 -72 202 358 7 68 chr6 124470335 124470483 -57944759 - L2 LINE L2 -27 3286 3148 2272 102 0 0 chr6 124470729 124471023 -57944219 - AluSq SINE Alu -19 294 1 667 215 31 0 chr6 124471098 124471228 -57944014 - MIR SINE MIR -120 142 9 417 297 176 25 chr6 124471259 124471498 -57943744 - L2 LINE L2 -406 2908 2634 1324 219 136 29 chr6 124471522 124471978 -57943264 - MLT1D LTR MaLR 0 505 1 23 0 0 0 chr6 124472568 124472591 -57942651 + AT_rich Low_complexity Low_complexity 1 23 0 894 162 54 15 chr6 124473320 124473524 -57941718 - L1MA9 LINE L1 0 6312 6101 12838 144 30 9 chr6 124473525 124474610 -57940632 + Tigger1 DNA MER2_type 2 1063 -1355 7709 93 11 5 chr6 124474610 124476511 -57938731 + L1PA7 LINE L1 4226 6151 -3 12838 144 30 9 chr6 124476511 124477745 -57937497 + Tigger1 DNA MER2_type 1063 2418 0 4769 173 25 15 chr6 124477747 124478075 -57937167 - L1MA8 LINE L1 -191 7519 7196 207 0 0 0 chr6 124478075 124478098 -57937144 + (TA)n Simple_repeat Simple_repeat 1 23 0 4769 173 25 15 chr6 124478098 124479595 -57935647 - L1MA8 LINE L1 -514 7196 5673 1188 276 72 30 chr6 124479582 124480179 -57935063 - L1MA8 LINE L1 -4111 3454 2833 * 537 239 56 18 chr6 124480183 124480341 -57934901 - L1PB4 LINE L1 -69 6082 5919 2443 235 138 85 chr6 124480348 124481033 -57934209 - L1M2 LINE L1 -4382 2725 2077 2058 129 6 22 chr6 124481033 124481350 -57933892 - AluSx SINE Alu 0 312 1 2443 235 138 85 chr6 124481350 124481429 -57933813 - L1M2 LINE L1 -5030 2077 2004 2297 169 21 19 chr6 124481429 124481856 -57933386 + MSTA LTR MaLR 1 428 0 2443 235 138 85 chr6 124481856 124482886 -57932356 - L1M2 LINE L1 -5103 2004 1029 1049 86 14 0 chr6 124482886 124483026 -57932216 + MER107 DNA MER1_type 1 142 -55 206 61 0 30 chr6 124483029 124483062 -57932180 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2443 235 138 85 chr6 124483062 124483664 -57931578 - L1M2 LINE L1 -6079 1028 1 312 281 84 49 chr6 124483866 124484069 -57931173 - L2 LINE L2 0 3313 3104 184 325 175 20 chr6 124484219 124484561 -57930681 + L2 LINE L2 1701 2095 -1219 213 275 46 64 chr6 124484821 124484930 -57930312 + L2 LINE L2 2647 2753 -561 213 39 0 0 chr6 124485079 124485105 -57930137 + (A)n Simple_repeat Simple_repeat 1 26 0 370 145 0 43 chr6 124485105 124485174 -57930068 - FLAM SINE Alu -16 117 52 257 246 14 0 chr6 124485176 124485245 -57929997 + MER58 DNA MER1_type 39 108 -107 197 143 0 48 chr6 124485295 124485358 -57929884 + (T)n Simple_repeat Simple_repeat 1 60 0 623 247 123 53 chr6 124485769 124486012 -57929230 - MIR SINE MIR 0 262 3 26 30 0 0 chr6 124486321 124486354 -57928888 + AT_rich Low_complexity Low_complexity 1 33 0 721 320 114 43 chr6 124486451 124486960 -57928282 - L3 LINE CR1 -126 1451 907 250 311 106 33 chr6 124487089 124487240 -57928002 - L3 LINE CR1 -737 840 679 22 0 0 0 chr6 124488058 124488080 -57927162 + AT_rich Low_complexity Low_complexity 1 22 0 316 321 82 38 chr6 124489620 124489804 -57925438 - L2 LINE L2 -202 3070 2879 756 239 111 33 chr6 124490127 124490554 -57924688 - MLT1H LTR MaLR -23 526 4 214 357 51 0 chr6 124491969 124492067 -57923175 + MIR SINE MIR 42 144 -64 537 220 46 0 chr6 124492080 124492189 -57923053 - MER81 DNA DNA 0 114 1 210 259 0 0 chr6 124492713 124492771 -57922471 + T-rich Low_complexity Low_complexity 1 58 0 331 256 86 150 chr6 124493231 124493590 -57921652 - L2 LINE L2 -1 3312 2977 197 367 19 0 chr6 124494124 124494212 -57921030 - MIR SINE MIR -68 140 48 2207 97 30 68 chr6 124494422 124494792 -57920450 - LTR12 LTR ERV1 0 714 359 258 282 39 0 chr6 124494792 124494870 -57920372 - LTR30 LTR ERV1 -98 624 544 590 105 0 0 chr6 124494870 124494956 -57920286 - LTR12 LTR ERV1 -437 277 192 2172 133 0 0 chr6 124494982 124495282 -57919960 - AluSx SINE Alu -10 302 3 1858 123 91 23 chr6 124495942 124496293 -57918949 - THE1C LTR MaLR 0 375 1 2189 209 20 35 chr6 124496489 124496997 -57918245 + MLT1D LTR MaLR 6 505 0 403 389 35 8 chr6 124497204 124497461 -57917781 + HERVL LTR ERVL 3140 3403 -2251 690 350 76 22 chr6 124497734 124498328 -57916914 + HERVL LTR ERVL 3873 4498 -1156 360 0 0 0 chr6 124499107 124499147 -57916095 + (TG)n Simple_repeat Simple_repeat 2 41 0 238 204 0 20 chr6 124499813 124499862 -57915380 + LTR67 LTR ERVL 509 556 -1 211 265 0 0 chr6 124500303 124500352 -57914890 + (CCA)n Simple_repeat Simple_repeat 1 49 0 14801 183 25 6 chr6 124501002 124501356 -57913886 - L1PB1 LINE L1 0 6867 6521 306 73 0 0 chr6 124501356 124501397 -57913845 + (TG)n Simple_repeat Simple_repeat 2 42 0 14801 183 25 6 chr6 124501397 124502395 -57912847 - L1PB1 LINE L1 -346 6521 5543 261 0 0 0 chr6 124502395 124502424 -57912818 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 14801 183 25 6 chr6 124502424 124506204 -57909038 - L1PB1 LINE L1 -1324 5543 1632 18944 52 4 1 chr6 124606224 124608653 -57806589 - L1P LINE L1 -1325 4821 2386 404 55 0 0 chr6 124608806 124608861 -57806381 + L1PA6 LINE L1 6099 6153 -1 302 196 76 11 chr6 124609014 124609106 -57806136 + L1ME3 LINE L1 6064 6161 -1 2004 125 31 0 chr6 124609115 124609404 -57805838 + AluSx SINE Alu 1 298 -14 2018 122 43 27 chr6 124609698 124610067 -57805175 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr6 124611531 124611552 -57803690 + AT_rich Low_complexity Low_complexity 1 21 0 612 289 114 18 chr6 124611955 124612183 -57803059 + MIR SINE MIR 2 251 -11 25 0 0 0 chr6 124612483 124612508 -57802734 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr6 124612863 124612895 -57802347 + AT_rich Low_complexity Low_complexity 1 32 0 947 183 41 0 chr6 124613350 124613547 -57801695 + MER3 DNA MER1_type 5 209 0 548 267 80 0 chr6 124613859 124614009 -57801233 - MIR SINE MIR -53 209 48 22 35 0 0 chr6 124614157 124614186 -57801056 + AT_rich Low_complexity Low_complexity 1 29 0 419 283 53 5 chr6 124614308 124614590 -57800652 + MER20B DNA MER1_type 8 338 -445 1464 218 151 45 chr6 124614590 124615261 -57799981 - HsTC2a DNA Tc2 -2 742 1 1029 250 129 5 chr6 124615261 124615655 -57799587 + MER20B DNA MER1_type 334 777 -6 7986 54 0 14 chr6 124615838 124617628 -57797614 + L1PA5 LINE L1 4378 6154 0 705 316 25 4 chr6 124617652 124617889 -57797353 + MIR SINE MIR 21 262 0 2186 90 0 0 chr6 124618291 124618570 -57796672 + AluSx SINE Alu 1 279 -33 342 0 0 0 chr6 124618570 124618608 -57796634 + (CAA)n Simple_repeat Simple_repeat 2 39 0 272 276 0 0 chr6 124618872 124618948 -57796294 + MIR SINE MIR 66 141 -121 255 308 51 0 chr6 124620414 124620492 -57794750 - L2 LINE L2 -38 3234 3153 1509 147 82 98 chr6 124620710 124621151 -57794091 - MLT1D LTR MaLR 0 505 72 325 237 105 0 chr6 124621823 124621937 -57793305 + L1MEc LINE L1 29 154 -6242 296 348 0 0 chr6 124622823 124622961 -57792281 + GA-rich Low_complexity Low_complexity 2 139 0 2193 44 4 25 chr6 124624200 124624474 -57790768 - AluSg SINE Alu -4 306 39 2255 87 7 3 chr6 124626318 124626616 -57788626 - AluY SINE Alu -12 299 1 1163 139 90 8 chr6 124626932 124627198 -57788044 + MER33 DNA MER1_type 2 289 -35 2192 73 3 60 chr6 124627540 124627855 -57787387 - AluSp SINE Alu -16 297 1 2348 76 10 0 chr6 124628005 124628308 -57786934 + AluSq SINE Alu 1 306 -7 257 326 61 0 chr6 124628983 124629081 -57786161 + MIR SINE MIR 49 152 -110 252 164 60 30 chr6 124629146 124629213 -57786029 - MIR SINE MIR -1 261 193 354 262 27 81 chr6 124629352 124629501 -57785741 + MER5B DNA MER1_type 4 144 -34 1888 195 58 9 chr6 124629858 124630305 -57784937 + L1ME2 LINE L1 5687 6155 -9 25 31 0 0 chr6 124630311 124630343 -57784899 + AT_rich Low_complexity Low_complexity 1 32 0 805 203 21 21 chr6 124630748 124630935 -57784307 + MER5A DNA MER1_type 3 189 0 199 330 80 10 chr6 124632076 124632176 -57783066 + L2 LINE L2 3159 3265 -48 643 316 46 5 chr6 124632820 124633016 -57782226 - MIR SINE MIR -50 212 9 186 43 0 0 chr6 124633093 124633116 -57782126 + (T)n Simple_repeat Simple_repeat 1 23 0 454 293 156 4 chr6 124633427 124633652 -57781590 + MER20B DNA MER1_type 4 262 -521 6600 126 32 42 chr6 124633656 124634088 -57781154 - Tigger3b DNA MER2_type -1797 1231 796 1617 150 201 14 chr6 124634088 124634447 -57780795 + MSTA LTR MaLR 1 426 -2 6600 126 32 42 chr6 124634447 124635254 -57779988 - Tigger3b DNA MER2_type -2232 796 4 1749 223 101 56 chr6 124635319 124636001 -57779241 - HsTC2a DNA Tc2 -3 741 29 14787 194 44 7 chr6 124636001 124639878 -57775364 + L1PA13 LINE L1 129 4219 -2578 198 0 0 0 chr6 124639878 124639900 -57775342 + (CAA)n Simple_repeat Simple_repeat 2 23 0 14787 194 44 7 chr6 124639900 124640779 -57774463 + L1PA13 LINE L1 4219 5064 -1733 830 109 0 0 chr6 124640779 124640915 -57774327 + AluY SINE Alu 172 307 0 5670 106 35 2 chr6 124640916 124642620 -57772622 + L1PA13 LINE L1 5062 6800 -14 659 263 92 11 chr6 124642662 124642943 -57772299 + MER20B DNA MER1_type 340 643 -140 2098 127 10 7 chr6 124643819 124644126 -57771116 + AluSx SINE Alu 1 308 -4 1684 173 41 44 chr6 124644247 124644446 -57770796 + MLT1A1 LTR MaLR 2 201 -164 231 61 0 0 chr6 124644446 124644479 -57770763 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 1684 173 41 44 chr6 124644479 124644644 -57770598 + MLT1A1 LTR MaLR 201 365 0 756 286 46 13 chr6 124644751 124644989 -57770253 + MIR SINE MIR 2 247 -15 37 0 0 0 chr6 124645399 124645436 -57769806 + AT_rich Low_complexity Low_complexity 1 37 0 1385 175 50 0 chr6 124645597 124645877 -57769365 + MER7A DNA MER2_type 1 292 -54 241 219 68 27 chr6 124646009 124646082 -57769160 + MIR SINE MIR 66 141 -121 218 318 11 11 chr6 124648614 124648702 -57766540 + GA-rich Low_complexity Low_complexity 1 88 0 260 137 20 0 chr6 124650446 124650497 -57764745 + CT-rich Low_complexity Low_complexity 5 56 0 26 0 0 0 chr6 124652147 124652173 -57763069 + AT_rich Low_complexity Low_complexity 1 26 0 245 229 229 8 chr6 124653805 124653923 -57761319 - MIR SINE MIR -31 231 88 499 298 67 39 chr6 124655003 124655211 -57760031 + MIR SINE MIR 1 214 -48 30 0 0 0 chr6 124655588 124655618 -57759624 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr6 124655640 124655666 -57759576 + (TG)n Simple_repeat Simple_repeat 2 27 0 207 357 79 14 chr6 124656147 124656287 -57758955 - MIR3 SINE MIR -7 201 53 493 134 98 18 chr6 124657121 124657233 -57758009 - MER106B DNA MER1_type -904 155 35 228 220 83 119 chr6 124657508 124657617 -57757625 + MER5B DNA MER1_type 1 105 -73 967 186 33 0 chr6 124657629 124657812 -57757430 - MER5A DNA MER1_type 0 189 1 302 273 74 74 chr6 124659038 124659309 -57755933 + L1ME LINE L1 63 333 -5737 491 222 41 94 chr6 124659547 124659769 -57755473 - L1ME LINE L1 -3735 2394 2227 1914 65 108 14 chr6 124659769 124660048 -57755194 - AluY SINE Alu -6 305 1 491 222 41 94 chr6 124660048 124660177 -57755065 - L1ME LINE L1 -3902 2227 2093 2630 45 0 0 chr6 124660182 124660493 -57754749 - AluY SINE Alu 0 311 1 308 234 121 43 chr6 124660909 124660969 -57754273 - L1ME LINE L1 -903 1587 1533 2450 86 7 0 chr6 124660969 124661273 -57753969 - AluSx SINE Alu -6 306 1 409 85 3 0 chr6 124661221 124661288 -57753954 - Alu SINE Alu -256 52 1 308 234 121 43 chr6 124661288 124661469 -57753773 - L1ME LINE L1 -972 1518 1347 1157 213 130 3 chr6 124661606 124661906 -57753336 + MER2 DNA MER2_type 1 338 -7 334 250 72 21 chr6 124661990 124662195 -57753047 - L1ME LINE L1 -5010 1109 887 323 346 10 0 chr6 124662348 124662452 -57752790 - L1ME LINE L1 -5448 671 567 180 0 0 0 chr6 124663650 124663670 -57751572 + (T)n Simple_repeat Simple_repeat 1 20 0 287 317 33 17 chr6 124664362 124664482 -57750760 + MER5A DNA MER1_type 68 189 0 237 270 87 40 chr6 124665322 124665448 -57749794 - MIR SINE MIR -91 171 40 269 191 0 0 chr6 124665600 124665647 -57749595 - MER96 DNA MER1_type? -124 51 5 532 224 55 55 chr6 124666086 124666251 -57748991 - MER69A DNA AcHobo -8 169 5 1542 197 3 3 chr6 124667494 124667784 -57747458 + AluJb SINE Alu 1 290 -22 1986 110 60 3 chr6 124667875 124668157 -57747085 + AluSg SINE Alu 1 298 -12 533 229 36 43 chr6 124668241 124668381 -57746861 + MIR SINE MIR 123 261 -1 344 305 17 34 chr6 124668378 124668496 -57746746 - MIR SINE MIR -57 151 36 * 373 209 22 0 chr6 124669739 124669830 -57745412 - L1MA10 LINE L1 -2 6332 6240 1982 157 39 18 chr6 124669831 124670213 -57745029 + MLT1B LTR MaLR 1 390 0 267 269 0 48 chr6 124670338 124670442 -57744800 - L1MC/D LINE L1 -2002 5806 5708 309 222 0 139 chr6 124670542 124670650 -57744592 - L2 LINE L2 -33 3280 3188 23 68 0 0 chr6 124670675 124670719 -57744523 + AT_rich Low_complexity Low_complexity 1 44 0 1557 75 5 5 chr6 124671005 124671206 -57744036 - AluSq SINE Alu -7 306 106 180 336 48 40 chr6 124671381 124671506 -57743736 - L2 LINE L2 -188 3084 2959 566 223 159 6 chr6 124671521 124671678 -57743564 + MER5A DNA MER1_type 9 189 0 200 59 29 0 chr6 124672323 124672357 -57742885 + (GA)n Simple_repeat Simple_repeat 1 35 0 223 226 0 32 chr6 124672390 124672452 -57742790 - L2 LINE L2 -43 3229 3170 257 53 53 0 chr6 124672928 124672966 -57742276 + MADE1 DNA Mariner 1 40 -40 186 366 47 30 chr6 124673107 124673342 -57741900 - L2 LINE L2 -1003 2311 2073 2377 80 3 0 chr6 124673607 124673908 -57741334 - AluSp SINE Alu -11 302 1 5842 132 31 11 chr6 124674108 124675293 -57739949 + L1MA8 LINE L1 5085 6291 0 21 0 0 0 chr6 124675472 124675493 -57739749 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 124675864 124675893 -57739349 + AT_rich Low_complexity Low_complexity 1 29 0 1945 327 87 39 chr6 124676055 124676085 -57739157 + L2 LINE L2 1625 1652 -1661 940 171 111 15 chr6 124676085 124676284 -57738958 - MER20 DNA MER1_type -1 218 1 1945 327 87 39 chr6 124676284 124677634 -57737608 + L2 LINE L2 1652 3067 -246 407 324 77 0 chr6 124680260 124680442 -57734800 - MIR SINE MIR -43 219 24 207 0 0 0 chr6 124681989 124682012 -57733230 + (A)n Simple_repeat Simple_repeat 1 23 0 2260 87 3 29 chr6 124682150 124682460 -57732782 - AluSc SINE Alu -7 302 1 454 278 102 98 chr6 124682513 124682961 -57732281 + MLT1L LTR MaLR 2 454 -161 891 170 6 24 chr6 124682961 124683126 -57732116 - FRAM SINE Alu -4 162 1 454 278 102 98 chr6 124683126 124683277 -57731965 + MLT1L LTR MaLR 454 603 -12 22 0 0 0 chr6 124683480 124683502 -57731740 + AT_rich Low_complexity Low_complexity 1 22 0 194 337 60 12 chr6 124684291 124684374 -57730868 + L2 LINE L2 3104 3190 -82 28 29 0 0 chr6 124685464 124685499 -57729743 + AT_rich Low_complexity Low_complexity 1 35 0 492 250 9 43 chr6 124685667 124685783 -57729459 - MER5B DNA MER1_type -59 119 8 27 0 0 0 chr6 124685793 124685820 -57729422 + AT_rich Low_complexity Low_complexity 1 27 0 309 299 87 16 chr6 124685835 124685962 -57729280 + L2 LINE L2 3160 3295 -18 343 292 54 38 chr6 124686572 124686757 -57728485 + L3 LINE CR1 709 896 -681 329 326 113 7 chr6 124686992 124687133 -57728109 + L3 LINE CR1 988 1143 -434 355 22 0 0 chr6 124687303 124687349 -57727893 - L1PA6 LINE L1 -2 6152 6107 680 204 154 0 chr6 124687459 124687621 -57727621 - MER5A DNA MER1_type -1 188 2 21 89 0 0 chr6 124687771 124687827 -57727415 + AT_rich Low_complexity Low_complexity 1 56 0 327 286 15 98 chr6 124687953 124688086 -57727156 + MIR SINE MIR 20 141 -121 639 178 119 0 chr6 124688109 124688227 -57727015 + FLAM_A SINE Alu 1 132 -1 580 221 99 115 chr6 124688535 124688978 -57726264 + MLT1H1 LTR MaLR 13 448 -107 895 252 80 66 chr6 124690735 124691235 -57724007 - MLT1G LTR MaLR 0 593 3 22 35 0 0 chr6 124691422 124691451 -57723791 + AT_rich Low_complexity Low_complexity 1 29 0 1003 261 17 1 chr6 124691455 124691705 -57723537 - MIR SINE MIR -1 261 9 258 349 116 14 chr6 124692021 124692167 -57723075 - MIR3 SINE MIR -18 190 30 230 191 0 0 chr6 124692827 124692869 -57722373 + MER58 DNA MER1_type 57 98 -243 * 595 157 10 0 chr6 124692867 124692969 -57722273 + MER58 DNA MER1_type 2318 2420 0 507 347 87 0 chr6 124695654 124695850 -57719392 + MIR SINE MIR 24 236 -26 299 305 70 31 chr6 124696180 124696308 -57718934 - MIR3 SINE MIR -34 174 42 1451 87 5 0 chr6 124696872 124697068 -57718174 - MER107 DNA MER1_type 0 197 1 323 240 177 21 chr6 124697277 124697373 -57717869 - L2 LINE L2 -12 3301 3191 402 305 64 26 chr6 124697440 124697786 -57717456 - L1MC/D LINE L1 -703 5451 5369 1306 284 72 19 chr6 124698255 124698784 -57716458 + L1ME3A LINE L1 5483 6039 -131 21 0 0 0 chr6 124699105 124699126 -57716116 + AT_rich Low_complexity Low_complexity 1 21 0 777 168 90 6 chr6 124699991 124700158 -57715084 - MER3 DNA MER1_type -27 182 2 5831 161 34 1 chr6 124701568 124702613 -57712629 - L1MC3 LINE L1 -1 7784 6706 312 275 46 55 chr6 124702674 124702783 -57712459 - MIR SINE MIR -71 137 30 840 180 122 48 chr6 124702985 124703174 -57712068 + MER20 DNA MER1_type 5 207 -12 1537 200 14 11 chr6 124703402 124703687 -57711555 - AluJo SINE Alu -26 286 1 547 328 58 12 chr6 124704322 124704563 -57710679 - MIR SINE MIR -10 252 1 185 225 0 0 chr6 124705279 124705319 -57709923 + MIR SINE MIR 213 252 -10 22 35 0 0 chr6 124706715 124706744 -57708498 + AT_rich Low_complexity Low_complexity 1 29 0 435 270 44 96 chr6 124707242 124707535 -57707707 - HAL1 LINE L1 -6 2501 2224 1367 204 86 0 chr6 124708066 124708346 -57706896 - AluJb SINE Alu -8 304 1 334 325 107 6 chr6 124708573 124708742 -57706500 - MIR SINE MIR -57 205 20 181 229 0 0 chr6 124709308 124709343 -57705899 + L3 LINE CR1 1344 1378 -199 387 216 230 34 chr6 124709817 124709965 -57705277 - MIR SINE MIR -8 254 78 580 291 38 0 chr6 124711044 124711202 -57704040 + MIR3 SINE MIR 36 199 -9 276 277 116 52 chr6 124711954 124712109 -57703133 - MIR SINE MIR -6 256 92 22 0 0 0 chr6 124713026 124713048 -57702194 + AT_rich Low_complexity Low_complexity 1 22 0 1353 290 79 33 chr6 124713333 124714817 -57700425 - L1ME3A LINE L1 -24 6146 4594 14661 184 25 11 chr6 124714817 124719880 -57695362 + L1PB1 LINE L1 1322 6526 -341 288 0 0 0 chr6 124719880 124719912 -57695330 + (CA)n Simple_repeat Simple_repeat 2 33 0 14661 184 25 11 chr6 124719912 124720258 -57694984 + L1PB1 LINE L1 6526 6866 -1 572 209 58 26 chr6 124720271 124720462 -57694780 - L1ME3A LINE L1 -1542 4604 4408 592 243 109 19 chr6 124720517 124720727 -57694515 - L1ME3A LINE L1 -2027 4119 3891 1672 232 78 108 chr6 124720934 124721899 -57693343 - L1MC5 LINE L1 -48 7913 6978 22 0 0 0 chr6 124721994 124722016 -57693226 + AT_rich Low_complexity Low_complexity 1 22 0 1152 93 22 0 chr6 124722553 124722750 -57692492 - L1P5 LINE L1 -714 5437 5237 651 92 0 0 chr6 124723801 124723888 -57691354 + 5S rRNA rRNA 4 90 -31 549 110 0 0 chr6 124724000 124724082 -57691160 + (CA)n Simple_repeat Simple_repeat 2 83 0 2300 263 52 49 chr6 124725591 124726810 -57688432 + L1MCc LINE L1 752 2202 -4887 647 265 59 25 chr6 124726839 124727043 -57688199 + L1ME2 LINE L1 5944 6154 -10 304 203 11 38 chr6 124727825 124727918 -57687324 + MLT1F1 LTR MaLR 46 133 -443 2029 217 117 6 chr6 124727920 124728431 -57686811 + L1MD3 LINE L1 7413 7980 -15 27 29 0 0 chr6 124728446 124728480 -57686762 + AT_rich Low_complexity Low_complexity 1 34 0 2200 106 0 3 chr6 124729515 124729817 -57685425 + AluSc SINE Alu 1 301 -8 297 276 78 133 chr6 124730974 124731267 -57683975 - L2 LINE L2 0 3272 2996 200 338 113 0 chr6 124731718 124731798 -57683444 - MIR SINE MIR -153 109 21 399 284 234 44 chr6 124731891 124732454 -57682788 + L2 LINE L2 1703 2372 -942 583 246 121 46 chr6 124733653 124734270 -57680972 + L1MDb LINE L1 1129 1808 -4598 2239 112 0 3 chr6 124734623 124734928 -57680314 + AluSc SINE Alu 1 304 -5 270 229 14 14 chr6 124735568 124735638 -57679604 - L1MCb LINE L1 -5758 287 218 * 396 241 0 0 chr6 124735636 124735723 -57679519 - L1 LINE L1 -1213 4933 4847 11866 213 25 46 chr6 124736556 124737016 -57678226 + L1PA16 LINE L1 2836 3304 -4300 2014 74 3 53 chr6 124737016 124737299 -57677943 - AluY SINE Alu -8 303 35 11866 213 25 46 chr6 124737299 124738971 -57676271 + L1PA16 LINE L1 3304 5009 -2595 198 0 0 0 chr6 124738971 124738993 -57676249 + (TA)n Simple_repeat Simple_repeat 2 23 0 2391 63 0 10 chr6 124738993 124739292 -57675950 - AluY SINE Alu -15 296 1 11866 213 25 46 chr6 124739292 124740781 -57674461 + L1PA16 LINE L1 5008 6377 -1227 4685 15 0 0 chr6 124740781 124741313 -57673929 - L1PA3 LINE L1 -1 6154 5623 11866 213 25 46 chr6 124741313 124742512 -57672730 + L1PA16 LINE L1 6377 7599 -5 549 277 81 57 chr6 124746151 124746523 -57668719 - L1MC4a LINE L1 -1754 6054 5674 442 19 0 0 chr6 124747013 124747065 -57668177 - MADE1 DNA Mariner -28 52 1 266 161 125 0 chr6 124748440 124748496 -57666746 + MER116 DNA Mariner 16 78 -2 180 200 0 0 chr6 124748990 124749040 -57666202 + (TA)n Simple_repeat Simple_repeat 2 51 0 217 313 121 0 chr6 124749286 124749385 -57665857 - L2 LINE L2 -1378 1936 1826 305 322 122 41 chr6 124751504 124751550 -57663692 + L2 LINE L2 2552 2593 -721 2032 132 3 25 chr6 124751550 124751868 -57663374 + AluSx SINE Alu 1 311 -1 305 322 122 41 chr6 124751868 124752116 -57663126 + L2 LINE L2 2593 2870 -444 23 33 0 0 chr6 124752855 124752885 -57662357 + AT_rich Low_complexity Low_complexity 1 30 0 897 52 17 0 chr6 124754138 124754253 -57660989 - AluSc SINE Alu -18 291 175 485 299 67 0 chr6 124754276 124754440 -57660802 - L1MC/D LINE L1 -2042 5766 5592 235 203 68 14 chr6 124754465 124754539 -57660703 - L1MC/D LINE L1 -2378 5430 5353 2129 132 0 3 chr6 124754664 124754974 -57660268 - AluSx SINE Alu -1 311 3 37 0 0 0 chr6 124755113 124755150 -57660092 + AT_rich Low_complexity Low_complexity 1 37 0 469 272 44 12 chr6 124755157 124755407 -57659835 - L1MC/D LINE L1 -1082 5064 4807 24 53 0 0 chr6 124756329 124756367 -57658875 + AT_rich Low_complexity Low_complexity 1 38 0 2234 86 7 3 chr6 124757621 124757913 -57657329 - AluSc SINE Alu -16 293 1 2132 122 0 10 chr6 124758623 124758927 -57656315 + AluSc SINE Alu 1 301 -8 21 57 0 0 chr6 124759022 124759057 -57656185 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 124759705 124759733 -57655509 + AT_rich Low_complexity Low_complexity 1 28 0 378 0 0 0 chr6 124760207 124760249 -57654993 + (TG)n Simple_repeat Simple_repeat 2 43 0 968 259 109 31 chr6 124760743 124761440 -57653802 + L1ME3A LINE L1 5174 5947 -223 412 264 157 0 chr6 124762009 124762189 -57653053 + MIR SINE MIR 42 248 -14 667 260 41 6 chr6 124763856 124764025 -57651217 + MIR SINE MIR 85 259 -3 2151 120 10 0 chr6 124764035 124764335 -57650907 - AluSg SINE Alu -7 303 1 228 146 0 0 chr6 124764461 124764502 -57650740 + L1MA9 LINE L1 5741 5781 -531 411 315 20 83 chr6 124765560 124765778 -57649464 + MIR SINE MIR 34 239 -23 2370 139 55 20 chr6 124765799 124766255 -57648987 + L1MA9 LINE L1 5769 6235 -77 231 64 0 0 chr6 124766255 124766302 -57648940 + LTR66 LTR ERVL 395 441 -169 276 161 0 0 chr6 124766311 124766373 -57648869 + L1MA9 LINE L1 6251 6312 0 220 282 56 0 chr6 124769524 124769595 -57645647 + MIR3 SINE MIR 123 197 -11 521 228 6 66 chr6 124769768 124769935 -57645307 + L1MC5 LINE L1 5363 5519 -2289 768 241 24 43 chr6 124769941 124770028 -57645214 + L1MC5 LINE L1 5625 5712 -2096 3118 86 12 0 chr6 124770028 124770460 -57644782 + L1PA13 LINE L1 5724 6160 -3 768 241 24 43 chr6 124770460 124770625 -57644617 + L1MC5 LINE L1 5712 5872 -1936 1339 212 90 132 chr6 124771310 124772399 -57642843 + L1MC5 LINE L1 6442 7470 -491 2186 178 10 15 chr6 124772399 124772793 -57642449 - MSTD LTR MaLR -4 392 1 1339 212 90 132 chr6 124772793 124773088 -57642154 + L1MC5 LINE L1 7470 7776 -185 356 263 20 10 chr6 124774126 124774225 -57641017 - MIR3 SINE MIR -8 200 101 29 0 0 0 chr6 124774410 124774439 -57640803 + AT_rich Low_complexity Low_complexity 1 29 0 654 177 81 0 chr6 124777407 124777531 -57637711 + MIR SINE MIR 79 212 -50 248 227 0 15 chr6 124777538 124777604 -57637638 + (CTA)n Simple_repeat Simple_repeat 1 65 0 26 0 0 0 chr6 124777834 124777860 -57637382 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr6 124778050 124778080 -57637162 + AT_rich Low_complexity Low_complexity 1 30 0 216 89 0 54 chr6 124782340 124782396 -57632846 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 2094 146 28 3 chr6 124784356 124784713 -57630529 + MER47A DNA MER2_type 1 366 0 2219 106 0 0 chr6 124785489 124785773 -57629469 - AluSg SINE Alu -26 284 1 206 281 62 0 chr6 124786998 124787062 -57628180 + L3 LINE CR1 1256 1323 -254 307 317 89 41 chr6 124787600 124787723 -57627519 + L2 LINE L2 3144 3272 0 25 31 0 0 chr6 124787852 124787884 -57627358 + AT_rich Low_complexity Low_complexity 1 32 0 280 289 99 35 chr6 124788877 124789019 -57626223 - MIR SINE MIR -111 151 1 542 300 45 0 chr6 124789305 124789505 -57625737 + L1MC/D LINE L1 5575 5783 -2025 652 197 15 8 chr6 124791937 124792069 -57623173 + Tigger7 DNA MER2_type 3 135 -2352 541 191 178 0 chr6 124792068 124792220 -57623022 + Tigger7 DNA MER2_type 2409 2587 0 * 222 37 0 0 chr6 124794117 124794144 -57621098 + (CA)n Simple_repeat Simple_repeat 2 28 0 2485 45 0 0 chr6 124794263 124794600 -57620642 + AluY SINE Alu 1 311 0 1609 166 7 11 chr6 124794950 124795221 -57620021 - AluJb SINE Alu -39 273 4 21 0 0 0 chr6 124795770 124795791 -57619451 + AT_rich Low_complexity Low_complexity 1 21 0 246 222 176 9 chr6 124796481 124796589 -57618653 - Charlie8 DNA MER1_type -2252 165 40 268 230 27 40 chr6 124797391 124797465 -57617777 + MIR SINE MIR 190 262 0 252 77 0 0 chr6 124797481 124797520 -57617722 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 437 270 20 13 chr6 124797525 124797677 -57617565 + MER63A DNA MER1_type 54 206 -4 398 125 73 42 chr6 124798171 124798267 -57616975 - MER53 DNA DNA -1 188 90 290 291 86 64 chr6 124798673 124798893 -57616349 + MIR SINE MIR 1 225 -37 186 313 171 38 chr6 124798922 124799238 -57616004 - L2 LINE L2 0 3313 2956 197 304 36 0 chr6 124799345 124799401 -57615841 + L2 LINE L2 3232 3289 -24 1049 214 14 9 chr6 124800035 124800255 -57614987 - MIR SINE MIR -34 228 8 237 208 0 0 chr6 124801261 124801309 -57613933 + (CGGGG)n Simple_repeat Simple_repeat 5 52 0 680 150 98 0 chr6 124802053 124802206 -57613036 - MER105 DNA DNA -35 169 2 1475 185 52 47 chr6 124803496 124803725 -57611517 + MLT1B LTR MaLR 1 234 -156 1811 171 3 7 chr6 124803725 124804034 -57611208 + AluJo SINE Alu 2 309 -3 1475 185 52 47 chr6 124804034 124804188 -57611054 + MLT1B LTR MaLR 234 386 -4 23 86 0 0 chr6 124804979 124805037 -57610205 + AT_rich Low_complexity Low_complexity 1 58 0 663 120 0 0 chr6 124805179 124805279 -57609963 - LTR12 LTR ERV1 0 714 615 331 189 33 22 chr6 124805282 124805372 -57609870 - LTR30 LTR ERV1 -80 642 552 1601 131 46 77 chr6 124805372 124805821 -57609421 - LTR12 LTR ERV1 -406 2032 1 5123 110 1 11 chr6 124805821 124806603 -57608639 - HERV9 LTR ERV1 0 8399 7626 1833 105 25 34 chr6 124806601 124807449 -57607793 - HERV9 LTR ERV1 -5156 1740 703 * 1213 151 5 18 chr6 124807419 124807638 -57607604 - HERV9 LTR ERV1 -3428 4971 4756 * 19469 102 19 9 chr6 124807637 124810673 -57604569 - HERV9 LTR ERV1 -1994 444 1 306 198 33 22 chr6 124810674 124810765 -57604477 - LTR30 LTR ERV1 -79 643 552 1567 87 94 62 chr6 124810765 124811041 -57604201 - LTR12 LTR ERV1 -429 285 1 280 290 161 6 chr6 124811116 124811278 -57603964 + L3 LINE CR1 718 904 -673 401 124 261 98 chr6 124812022 124812175 -57603067 - MER53 DNA DNA -7 182 5 2002 134 12 94 chr6 124812283 124812708 -57602534 + MLT1B LTR MaLR 1 390 0 372 282 88 18 chr6 124813870 124814040 -57601202 - LTR16C LTR ERVL -10 481 300 291 346 70 26 chr6 124814857 124815013 -57600229 - L2 LINE L2 -5 3308 3146 373 297 124 0 chr6 124815201 124815346 -57599896 + L2 LINE L2 3110 3272 0 1403 80 0 0 chr6 124815950 124816125 -57599117 + AluY SINE Alu 121 295 -16 246 32 0 0 chr6 124816402 124816433 -57598809 + (CA)n Simple_repeat Simple_repeat 1 31 0 219 277 101 17 chr6 124816486 124816605 -57598637 - MIR SINE MIR -3 259 131 996 260 178 13 chr6 124816890 124817352 -57597890 + L2 LINE L2 581 1118 -2196 1151 294 59 41 chr6 124817353 124817864 -57597378 + MLT1H LTR MaLR 17 536 -13 579 316 169 4 chr6 124817904 124818170 -57597072 + L2 LINE L2 1126 1435 -1879 1228 194 53 4 chr6 124818174 124818401 -57596841 + AluJo SINE Alu 1 238 -74 886 210 74 0 chr6 124818411 124818587 -57596655 + MER5A DNA MER1_type 1 189 0 3605 265 77 64 chr6 124818587 124820352 -57594890 + L2 LINE L2 1512 3306 -7 2084 112 3 3 chr6 124820473 124820760 -57594482 - AluSq SINE Alu -26 287 1 852 297 43 25 chr6 124820760 124820885 -57594357 - L1MC/D LINE L1 -743 5403 5510 2607 107 3 3 chr6 124820885 124821249 -57593993 + THE1B LTR MaLR 1 364 0 852 297 43 25 chr6 124821249 124821547 -57593695 - L1MC/D LINE L1 -635 5511 5220 1973 134 41 0 chr6 124821681 124821971 -57593271 + AluSc SINE Alu 1 302 -7 1537 171 65 0 chr6 124822272 124822535 -57592707 + AluJo SINE Alu 12 291 -21 21 36 0 0 chr6 124822538 124822566 -57592676 + AT_rich Low_complexity Low_complexity 1 28 0 1100 258 114 60 chr6 124822608 124823555 -57591687 + L1ME3A LINE L1 5164 6163 -1 2267 110 0 0 chr6 124823957 124824257 -57590985 - AluSq SINE Alu -13 300 1 196 306 65 0 chr6 124824445 124824507 -57590735 + L2 LINE L2 3246 3311 -2 203 235 133 20 chr6 124826229 124826327 -57588915 + L2 LINE L2 2786 2894 -420 190 209 23 0 chr6 124826352 124826395 -57588847 - MIR SINE MIR -150 112 69 651 243 17 39 chr6 124826727 124826908 -57588334 - MIR SINE MIR -14 248 72 31 0 0 0 chr6 124827583 124827614 -57587628 + AT_rich Low_complexity Low_complexity 1 31 0 408 216 41 10 chr6 124827740 124827837 -57587405 - MER81 DNA DNA -1 113 14 1080 277 45 30 chr6 124829329 124829569 -57585673 - MLT1I LTR MaLR -2 407 157 315 0 0 0 chr6 124829569 124829604 -57585638 + (TG)n Simple_repeat Simple_repeat 2 36 0 1080 277 45 30 chr6 124829604 124829764 -57585478 - MLT1I LTR MaLR -252 157 1 269 330 30 30 chr6 124830076 124830176 -57585066 + L2 LINE L2 3169 3268 -4 428 215 33 58 chr6 124830301 124830422 -57584820 + L2 LINE L2 3195 3312 -1 24 0 0 0 chr6 124831983 124832007 -57583235 + AT_rich Low_complexity Low_complexity 1 24 0 553 219 0 0 chr6 124832190 124832286 -57582956 + MER5A DNA MER1_type 11 106 -83 239 329 26 0 chr6 124832461 124832537 -57582705 + 5S rRNA rRNA 33 110 -11 459 207 11 0 chr6 124832559 124832646 -57582596 - AluJ/FLAM SINE Alu -224 88 1 198 322 0 17 chr6 124833180 124833239 -57582003 - L3 LINE CR1 -1103 474 417 183 299 41 52 chr6 124833691 124833788 -57581454 - L3 LINE CR1 -1184 393 298 192 40 0 0 chr6 124833922 124833947 -57581295 + (CAT)n Simple_repeat Simple_repeat 3 27 0 565 312 95 46 chr6 124834554 124834728 -57580514 - L2 LINE L2 -3 3310 3146 231 103 0 0 chr6 124834728 124834767 -57580475 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 565 312 95 46 chr6 124834767 124834780 -57580462 - L2 LINE L2 -167 3146 3135 1686 169 121 46 chr6 124834780 124835211 -57580031 - MLT1C LTR MaLR 0 467 5 565 312 95 46 chr6 124835211 124835630 -57579612 - L2 LINE L2 -178 3135 2665 3234 73 20 7 chr6 124835630 124835672 -57579570 - MLT2A1 LTR ERVL 0 444 404 240 35 0 0 chr6 124835672 124835701 -57579541 + (CA)n Simple_repeat Simple_repeat 2 30 0 3234 73 20 7 chr6 124835701 124836096 -57579146 - MLT2A1 LTR ERVL -40 404 1 565 312 95 46 chr6 124836096 124836129 -57579113 - L2 LINE L2 -648 2665 2635 267 208 0 0 chr6 124836306 124836354 -57578888 - L2 LINE L2 -5 3308 3261 182 352 45 23 chr6 124838044 124838132 -57577110 - L2 LINE L2 -506 2808 2719 466 233 31 104 chr6 124838173 124838366 -57576876 + MIR SINE MIR 27 205 -57 2580 133 18 35 chr6 124838373 124838969 -57576273 - L1MA7 LINE L1 -2 6289 5598 182 111 0 0 chr6 124838969 124838996 -57576246 + MIR SINE MIR 216 242 -20 204 158 0 0 chr6 124839641 124839679 -57575563 + T-rich Low_complexity Low_complexity 1 38 0 630 104 17 17 chr6 124840088 124840203 -57575039 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 317 23 0 23 chr6 124840692 124840735 -57574507 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr6 124841499 124841520 -57573722 + AT_rich Low_complexity Low_complexity 1 21 0 255 61 0 0 chr6 124842933 124842966 -57572276 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 2700 16 0 3 chr6 124843203 124843506 -57571736 - AluY SINE Alu -9 302 1 25 0 0 0 chr6 124843983 124844008 -57571234 + AT_rich Low_complexity Low_complexity 1 25 0 1387 153 4 60 chr6 124845666 124845934 -57569308 + AluJb SINE Alu 54 306 -6 385 128 54 20 chr6 124847571 124847719 -57567523 + (TATAA)n Simple_repeat Simple_repeat 5 157 0 21 89 0 0 chr6 124848062 124848118 -57567124 + AT_rich Low_complexity Low_complexity 1 56 0 793 319 22 0 chr6 124848995 124849224 -57566018 + MIR SINE MIR 19 252 -10 429 340 110 48 chr6 124849370 124849705 -57565537 + L2 LINE L2 2915 3270 -2 214 367 39 23 chr6 124851344 124851472 -57563770 - L2 LINE L2 -2 3270 3141 2379 216 49 13 chr6 124851492 124852047 -57563195 - MER90 LTR ERV1 0 575 1 692 307 48 9 chr6 124852339 124852570 -57562672 - MIR SINE MIR -4 258 19 215 333 83 8 chr6 124853259 124853379 -57561863 - MIR SINE MIR -68 194 66 1833 159 3 3 chr6 124853455 124853745 -57561497 + AluJb SINE Alu 7 296 -16 493 243 111 49 chr6 124854200 124854512 -57560730 + MLT1H LTR MaLR 95 491 -58 410 230 0 23 chr6 124854498 124854585 -57560657 + AluSp SINE Alu 132 216 -87 * 923 138 105 13 chr6 124854585 124854737 -57560505 + AluSg/x SINE Alu 131 296 -14 306 106 0 0 chr6 124855066 124855113 -57560129 + (TA)n Simple_repeat Simple_repeat 1 47 0 6987 54 0 0 chr6 124855343 124856446 -57558796 - L1PA7 LINE L1 -2 6152 5038 22940 100 5 5 chr6 124856449 124860678 -57554564 - L1P3 LINE L1 -1054 5407 9 36 77 0 0 chr6 124861201 124861279 -57553963 + AT_rich Low_complexity Low_complexity 1 78 0 324 301 93 9 chr6 124861420 124861636 -57553606 + L1ME1 LINE L1 5692 5925 -241 198 103 0 0 chr6 124862162 124862191 -57553051 + (T)n Simple_repeat Simple_repeat 1 29 0 33 73 0 0 chr6 124863832 124863900 -57551342 + AT_rich Low_complexity Low_complexity 1 68 0 27 0 0 0 chr6 124864622 124864649 -57550593 + AT_rich Low_complexity Low_complexity 1 27 0 298 265 167 12 chr6 124866894 124867056 -57548186 + L2 LINE L2 1660 1846 -1468 869 196 89 107 chr6 124867066 124867606 -57547636 - L1MC5 LINE L1 -35 7926 7397 427 292 15 15 chr6 124867606 124867736 -57547506 + L2 LINE L2 1829 1958 -1356 1637 141 14 0 chr6 124867744 124868020 -57547222 - L1MA4 LINE L1 -12 6288 6009 1243 292 44 26 chr6 124868046 124868543 -57546699 + L2 LINE L2 2378 2883 -431 31 0 0 0 chr6 124869199 124869230 -57546012 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr6 124869890 124869918 -57545324 + AT_rich Low_complexity Low_complexity 1 28 0 269 340 38 19 chr6 124871015 124871174 -57544068 - L1ME LINE L1 -385 5736 5575 1735 204 128 7 chr6 124871200 124871708 -57543534 - MER21B LTR ERV1 -193 670 38 256 250 0 0 chr6 124871691 124871743 -57543499 + MER21B LTR ERV1 38 89 -774 * 402 305 98 0 chr6 124872350 124872514 -57542728 + MIR SINE MIR 48 227 -35 184 208 62 21 chr6 124872636 124872684 -57542558 + L2 LINE L2 3262 3311 -2 1077 232 140 21 chr6 124872758 124873137 -57542105 - L2 LINE L2 -46 3267 2844 2043 198 42 15 chr6 124873279 124873734 -57541508 + MLT1C LTR MaLR 1 467 0 22 70 0 0 chr6 124873860 124873903 -57541339 + AT_rich Low_complexity Low_complexity 1 43 0 474 230 12 63 chr6 124873970 124874113 -57541129 + MER21B LTR ERV1 693 895 -36 611 88 11 0 chr6 124875554 124875645 -57539597 + (TTCC)n Simple_repeat Simple_repeat 4 95 0 265 303 40 0 chr6 124875646 124875745 -57539497 - L1ME LINE L1 -1001 5145 5043 319 232 36 196 chr6 124876128 124876352 -57538890 - MIR SINE MIR -74 188 1 7008 21 0 6 chr6 124877052 124877872 -57537370 + L1PA3 LINE L1 5341 6155 0 189 121 0 0 chr6 124877890 124877923 -57537319 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 387 0 0 0 chr6 124878034 124878077 -57537165 + (TG)n Simple_repeat Simple_repeat 2 44 0 359 223 78 0 chr6 124878250 124878353 -57536889 - L1ME2 LINE L1 -15 6083 5973 258 232 200 11 chr6 124878357 124878452 -57536790 - FLAM_C SINE Alu -12 121 9 3090 199 62 3 chr6 124878460 124879152 -57536090 - L1ME2 LINE L1 -112 5986 5254 395 232 87 46 chr6 124879131 124879372 -57535870 - L1ME2 LINE L1 -5322 748 498 * 2530 261 50 21 chr6 124879409 124880356 -57534886 - L1ME LINE L1 -2088 4058 3085 27 29 0 0 chr6 124880975 124881009 -57534233 + AT_rich Low_complexity Low_complexity 1 34 0 321 135 101 22 chr6 124881231 124881320 -57533922 + L1MC5 LINE L1 7812 7907 -54 2154 107 23 0 chr6 124881545 124881845 -57533397 + AluSx SINE Alu 1 307 -5 660 217 102 0 chr6 124881904 124882130 -57533112 - MER69 DNA AcHobo -211 2315 2067 350 290 75 27 chr6 124882833 124883019 -57532223 - L2 LINE L2 -1 3312 3118 191 316 32 32 chr6 124884363 124884458 -57530784 + MER5A DNA MER1_type 3 97 -92 2111 162 41 3 chr6 124884550 124884938 -57530304 - MER57A LTR ERV1 0 403 1 266 50 25 0 chr6 124885384 124885424 -57529818 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 228 35 0 0 chr6 124885560 124885589 -57529653 + (CA)n Simple_repeat Simple_repeat 2 30 0 624 179 231 0 chr6 124885671 124885844 -57529398 - L1MA4 LINE L1 -5 6295 6083 4590 135 1 60 chr6 124885858 124886668 -57528574 - THE1C-int LTR MaLR -816 764 3 1793 134 88 20 chr6 124886670 124887021 -57528221 - THE1C LTR MaLR 0 375 1 227 257 0 27 chr6 124889948 124890022 -57525220 + MIR SINE MIR 189 260 -2 532 199 99 13 chr6 124891329 124891480 -57523762 - MIR SINE MIR -8 254 91 25 31 0 0 chr6 124891733 124891765 -57523477 + AT_rich Low_complexity Low_complexity 1 32 0 2075 78 46 0 chr6 124891907 124892189 -57523053 - AluY SINE Alu -16 295 1 21 0 0 0 chr6 124892198 124892219 -57523023 + AT_rich Low_complexity Low_complexity 1 21 0 710 208 15 0 chr6 124892701 124892831 -57522411 - MER5A DNA MER1_type 0 189 58 2457 127 15 13 chr6 124892831 124893224 -57522018 + MER57A LTR ERV1 10 403 0 324 175 18 0 chr6 124893224 124893281 -57521961 - MER5A DNA MER1_type -131 58 1 306 306 65 9 chr6 124894679 124894787 -57520455 + MIR SINE MIR 34 147 -61 21 0 0 0 chr6 124895268 124895289 -57519953 + AT_rich Low_complexity Low_complexity 1 21 0 1012 191 0 0 chr6 124895289 124895457 -57519785 - FAM SINE Alu -6 169 2 712 277 92 32 chr6 124895463 124896193 -57519049 - L1ME LINE L1 -344 5818 5068 305 304 88 0 chr6 124896199 124896347 -57518895 - L1ME LINE L1 -1109 5037 4877 767 247 137 60 chr6 124896539 124896919 -57518323 + MLT1I LTR MaLR 1 409 0 1958 109 39 0 chr6 124899515 124899798 -57515444 - AluSc SINE Alu -15 294 1 2768 143 22 0 chr6 124900284 124900744 -57514498 - MER101 LTR ERV1 0 474 5 210 289 0 0 chr6 124900751 124900855 -57514387 + (TA)n Simple_repeat Simple_repeat 1 104 0 2103 118 0 3 chr6 124900873 124901177 -57514065 - AluSc SINE Alu -6 303 1 2257 114 0 13 chr6 124901588 124901904 -57513338 + AluSx SINE Alu 1 312 0 182 323 83 0 chr6 124903358 124903454 -57511788 - L2 LINE L2 -1 3271 3168 186 317 83 87 chr6 124903585 124903885 -57511357 - L2 LINE L2 -367 2947 2649 1170 203 16 48 chr6 124907251 124907502 -57507740 - MLT1A2 LTR MaLR -114 260 18 402 130 0 0 chr6 124908493 124908570 -57506672 - L1PB4 LINE L1 0 6156 6080 342 294 51 28 chr6 124908608 124908785 -57506457 + HAL1b LINE L1 252 432 -916 501 306 29 29 chr6 124908895 124909170 -57506072 - L1MC4 LINE L1 -60 7982 7708 218 179 0 0 chr6 124909657 124909696 -57505546 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 422 163 34 88 chr6 124909985 124910132 -57505110 + L1PB4 LINE L1 3178 3316 -2830 8625 198 19 6 chr6 124910149 124912853 -57502389 + L1PB4 LINE L1 3442 6299 -3 351 296 78 0 chr6 124914355 124914470 -57500772 - L2 LINE L2 0 3313 3190 1035 222 48 4 chr6 124914749 124914997 -57500245 + MIR SINE MIR 3 261 -1 218 294 98 33 chr6 124915476 124915629 -57499613 - MIR3 SINE MIR -6 202 40 392 322 50 30 chr6 124915792 124915991 -57499251 - MLT1I LTR MaLR -127 282 80 210 239 42 42 chr6 124916332 124916403 -57498839 + MIR SINE MIR 114 184 -78 661 276 128 5 chr6 124916403 124916606 -57498636 - MIR SINE MIR -10 252 25 283 277 153 28 chr6 124916933 124917110 -57498132 - MIR SINE MIR -56 206 8 536 317 193 5 chr6 124917612 124917814 -57497428 + MIR SINE MIR 16 255 -7 186 103 0 0 chr6 124917815 124917844 -57497398 + (ATG)n Simple_repeat Simple_repeat 2 30 0 325 370 83 52 chr6 124917855 124918182 -57497060 - L2 LINE L2 -51 3221 2885 288 319 148 6 chr6 124918246 124918415 -57496827 - L2 LINE L2 -558 2756 2564 588 310 117 14 chr6 124918822 124919035 -57496207 + MIR SINE MIR 12 246 -16 2114 141 0 0 chr6 124919048 124919345 -57495897 - AluSx SINE Alu -15 297 1 2504 180 60 18 chr6 124919669 124920168 -57495074 - MLT2B1 LTR ERVL 0 520 1 199 341 217 0 chr6 124920732 124920861 -57494381 + MIR3 SINE MIR 45 201 -7 198 258 45 0 chr6 124920998 124921064 -57494178 - L3 LINE CR1 -159 1418 1350 4417 153 45 10 chr6 124922156 124923048 -57492194 - Tigger3b DNA MER2_type -1 1230 308 1383 167 0 9 chr6 124923066 124923282 -57491960 - AluJb SINE Alu -15 297 84 965 171 271 4 chr6 124923283 124923534 -57491708 - Tigger3b DNA MER2_type -913 318 1 24 0 0 0 chr6 124923769 124923793 -57491449 + AT_rich Low_complexity Low_complexity 1 24 0 322 284 112 31 chr6 124925337 124925496 -57489746 - MIR3 SINE MIR -63 145 10 258 292 161 15 chr6 124927120 124927250 -57487992 - L2 LINE L2 0 3313 3165 251 318 117 67 chr6 124927464 124927643 -57487599 - MIR3 SINE MIR -9 199 12 2266 107 0 3 chr6 124928248 124928547 -57486695 - AluSx SINE Alu -14 298 1 2270 77 3 0 chr6 124928569 124928867 -57486375 - L1PA7 LINE L1 -4 6150 5852 204 224 129 47 chr6 124929298 124929383 -57485859 + MIR SINE MIR 135 226 -36 838 225 217 82 chr6 124931030 124931194 -57484048 - L1ME3A LINE L1 -13 6157 6017 1328 179 12 77 chr6 124931194 124931518 -57483724 - AluJo SINE Alu -9 303 1 838 225 217 82 chr6 124931518 124931974 -57483268 - L1ME3A LINE L1 -153 6017 5453 380 214 51 8 chr6 124932207 124932324 -57482918 - MLT1K LTR MaLR 0 588 467 234 229 14 14 chr6 124932607 124932677 -57482565 - MLT1K LTR MaLR -508 80 11 498 271 40 0 chr6 124933684 124933835 -57481407 + MER58A DNA MER1_type 9 165 0 240 250 0 0 chr6 124933844 124933892 -57481350 + L2 LINE L2 3190 3237 -76 195 204 0 0 chr6 124933933 124933982 -57481260 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 241 287 39 47 chr6 124934038 124934167 -57481075 - L2 LINE L2 -203 3069 2942 442 284 112 0 chr6 124935160 124935329 -57479913 + MIR SINE MIR 74 261 -1 209 206 0 0 chr6 124935340 124935374 -57479868 - MIR SINE MIR -180 82 49 1823 236 62 2 chr6 124935612 124936044 -57479198 + MER119 DNA MER1_type 1 458 -125 41167 30 21 1 chr6 124936074 124942102 -57473140 - L1PA2 LINE L1 -3 6152 2 467 238 7 42 chr6 124942105 124942248 -57472994 + MER119 DNA MER1_type 446 583 0 506 229 224 6 chr6 124942289 124942459 -57472783 + MIR SINE MIR 48 254 -8 2167 131 0 6 chr6 124943300 124943790 -57471452 - AluSx SINE Alu 0 312 1 518 248 188 41 chr6 124944191 124944409 -57470833 - MIR SINE MIR 0 262 13 890 284 148 8 chr6 124946737 124947128 -57468114 + L2 LINE L2 1872 2317 -997 513 252 92 17 chr6 124947130 124947459 -57467783 - MLT1I LTR MaLR 0 409 1 1166 276 195 26 chr6 124947465 124948324 -57466918 + L2 LINE L2 2316 3313 0 2865 3 0 0 chr6 124948646 124948954 -57466288 + AluYa5 SINE Alu 1 308 -3 23 33 0 0 chr6 124949022 124949052 -57466190 + AT_rich Low_complexity Low_complexity 1 30 0 6345 26 0 0 chr6 124949052 124949821 -57465421 - L1PA3 LINE L1 -3 6152 5384 2701 31 17 0 chr6 124949818 124950178 -57465064 + L1PA3 LINE L1 5015 5380 -766 * 227 203 0 58 chr6 124950740 124950809 -57464433 + MIR SINE MIR 133 197 -65 6607 70 8 0 chr6 124950954 124952656 -57462586 - L1PA7 LINE L1 0 6154 4437 3252 96 2 0 chr6 124952656 124953134 -57462108 + L1PA7 LINE L1 3958 4436 -1710 375 290 50 0 chr6 124953134 124953234 -57462008 - MIR SINE MIR -69 193 89 370 303 186 15 chr6 124953379 124953643 -57461599 - L2 LINE L2 -966 2348 2040 1625 266 37 35 chr6 124953658 124954199 -57461043 - MLT1E LTR MaLR -37 556 15 226 319 135 6 chr6 124954361 124954524 -57460718 - MLT1J2 LTR MaLR 0 450 267 517 210 63 14 chr6 124954552 124954695 -57460547 - MLT1J2 LTR MaLR -264 186 37 324 0 0 0 chr6 124954781 124954817 -57460425 + (CA)n Simple_repeat Simple_repeat 2 37 0 248 232 66 80 chr6 124954859 124955010 -57460232 - L1ME3A LINE L1 -2 6168 6020 462 296 154 47 chr6 124955132 124955625 -57459617 + L2 LINE L2 1803 2348 -966 948 211 30 35 chr6 124955658 124955890 -57459352 - MIR SINE MIR 0 262 32 5095 90 19 3 chr6 124956643 124957413 -57457829 + L1PA13 LINE L1 5377 6159 -4 190 195 0 0 chr6 124958723 124958764 -57456478 + L2 LINE L2 3267 3307 -6 30319 108 9 55 chr6 124960629 124967089 -57448153 - L1PA7 LINE L1 0 6469 1 370 275 68 15 chr6 124967458 124967650 -57447592 - MLT1L LTR MaLR -29 583 290 212 167 0 0 chr6 124967985 124968021 -57447221 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 230 239 30 0 chr6 124968069 124968136 -57447106 + (TG)n Simple_repeat Simple_repeat 2 70 0 785 287 76 20 chr6 124971070 124971373 -57443869 - MLT1I LTR MaLR -83 326 7 284 320 104 8 chr6 124971464 124971589 -57443653 - L2 LINE L2 0 3272 3136 312 275 152 63 chr6 124971714 124971919 -57443323 + MLT1J LTR MaLR 100 348 -163 2285 107 0 3 chr6 124971919 124972229 -57443013 - AluSx SINE Alu -3 309 1 312 275 152 63 chr6 124972229 124972358 -57442884 + MLT1J LTR MaLR 348 464 -47 9038 108 101 31 chr6 124973530 124975118 -57440124 + pTR5 LTR ERV1 741 2438 0 252 347 179 22 chr6 124975121 124975490 -57439752 - L2 LINE L2 -592 2722 2296 209 309 77 77 chr6 124975506 124975778 -57439464 - L2 LINE L2 -1395 1919 1648 211 231 19 0 chr6 124976340 124976392 -57438850 + A-rich Low_complexity Low_complexity 4 56 0 281 226 0 0 chr6 124976594 124976647 -57438595 - MIR3 SINE MIR -3 205 153 311 245 20 61 chr6 124979095 124979188 -57436054 - L2 LINE L2 -1 3271 3183 454 293 116 58 chr6 124979188 124979430 -57435812 + MIR SINE MIR 1 256 -6 23 0 0 0 chr6 124980176 124980199 -57435043 + AT_rich Low_complexity Low_complexity 1 23 0 260 239 0 60 chr6 124980357 124980424 -57434818 + L2 LINE L2 3209 3271 -1 258 32 0 0 chr6 124981335 124981366 -57433876 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 337 299 10 0 chr6 124981366 124981463 -57433779 - L2 LINE L2 -5 3308 3211 288 111 0 0 chr6 124982051 124982096 -57433146 + (CCA)n Simple_repeat Simple_repeat 3 47 0 23 0 0 0 chr6 124982577 124982600 -57432642 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr6 124982775 124982805 -57432437 + AT_rich Low_complexity Low_complexity 1 30 0 200 340 0 0 chr6 124983421 124983471 -57431771 - L2 LINE L2 -39 3233 3184 222 91 0 0 chr6 124983577 124983610 -57431632 + (CCA)n Simple_repeat Simple_repeat 3 35 0 369 297 70 0 chr6 124984021 124984149 -57431093 - MIR SINE MIR -24 238 102 214 332 136 55 chr6 124984198 124984397 -57430845 + L2 LINE L2 2403 2617 -697 2104 137 47 33 chr6 124984415 124984774 -57430468 + THE1B LTR MaLR 1 364 0 288 0 0 0 chr6 124985283 124985315 -57429927 + (TG)n Simple_repeat Simple_repeat 2 33 0 1221 197 28 16 chr6 124986499 124986748 -57428494 + MLT2B1 LTR ERVL 3 254 -266 28 29 0 0 chr6 124986751 124986786 -57428456 + AT_rich Low_complexity Low_complexity 1 35 0 905 257 21 51 chr6 124986809 124987046 -57428196 + MLT2B1 LTR ERVL 225 454 -66 579 295 162 32 chr6 124987224 124987699 -57427543 + MARNA DNA Mariner 28 564 -22 853 297 34 31 chr6 124988243 124988593 -57426649 + L3 LINE CR1 651 1001 -576 611 287 25 49 chr6 124988623 124988947 -57426295 + L1MC4a LINE L1 5756 6071 -1737 241 306 90 9 chr6 124989224 124989335 -57425907 + L3 LINE CR1 1236 1355 -222 288 318 117 50 chr6 124989342 124989521 -57425721 - L2 LINE L2 -1 3271 3081 2532 158 40 5 chr6 124989583 124990032 -57425210 + MER31A LTR ERV1 13 477 -8 236 203 188 47 chr6 124990253 124990381 -57424861 + L3 LINE CR1 1357 1502 -75 184 274 48 36 chr6 124990981 124991065 -57424177 + L2 LINE L2 3229 3313 0 275 0 29 0 chr6 124991150 124991185 -57424057 + (CA)n Simple_repeat Simple_repeat 2 37 0 349 308 83 17 chr6 124991185 124991305 -57423937 - MIR SINE MIR -122 140 13 24 67 0 0 chr6 124991351 124991396 -57423846 + AT_rich Low_complexity Low_complexity 1 45 0 434 49 16 0 chr6 124991397 124991458 -57423784 + (TA)n Simple_repeat Simple_repeat 2 63 0 1044 160 31 0 chr6 124992399 124992593 -57422649 - L1MA4 LINE L1 -84 6216 6017 511 164 91 36 chr6 124994240 124994350 -57420892 + MLT1A1 LTR MaLR 1 116 -249 222 254 0 18 chr6 124997237 124997292 -57417950 + MIR SINE MIR 153 206 -56 543 144 4 6 chr6 124997572 124997822 -57417420 + AluSx SINE Alu 1 300 -12 185 233 14 68 chr6 124998609 124998682 -57416560 + MIR SINE MIR 84 152 -56 234 0 0 0 chr6 124998887 124998913 -57416329 + (TG)n Simple_repeat Simple_repeat 2 27 0 399 73 0 0 chr6 125000538 125000593 -57414649 + (CA)n Simple_repeat Simple_repeat 1 55 0 194 0 39 0 chr6 125000853 125000879 -57414363 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr6 125000948 125000969 -57414273 + AT_rich Low_complexity Low_complexity 1 21 0 295 345 146 12 chr6 125001668 125001839 -57413403 - MIR SINE MIR -21 241 48 2443 150 33 19 chr6 125001857 125002276 -57412966 - MSTB1 LTR MaLR 0 432 8 22 0 0 0 chr6 125002693 125002715 -57412527 + AT_rich Low_complexity Low_complexity 1 22 0 2072 204 26 7 chr6 125002899 125003356 -57411886 + MLT1C LTR MaLR 1 466 -1 214 293 8 83 chr6 125004065 125004198 -57411044 - MIR SINE MIR -109 153 31 182 264 19 0 chr6 125006143 125006196 -57409046 - L3b LINE CR1 -376 1207 1154 3236 176 31 72 chr6 125006704 125007532 -57407710 - Charlie1a DNA MER1_type 0 1455 662 851 230 15 45 chr6 125007527 125007727 -57407515 - Charlie1a DNA MER1_type -1255 200 7 * 258 320 143 49 chr6 125007743 125007946 -57407296 + L2 LINE L2 2255 2476 -838 354 280 140 21 chr6 125008190 125008383 -57406859 + MIR SINE MIR 47 262 0 204 391 0 0 chr6 125008450 125008537 -57406705 + L2 LINE L2 3178 3264 -8 369 289 44 0 chr6 125009829 125009943 -57405299 - MER94 DNA DNA -7 127 9 21 36 0 0 chr6 125011161 125011189 -57404053 + AT_rich Low_complexity Low_complexity 1 28 0 3809 121 120 70 chr6 125011828 125013215 -57402027 - pTR5 LTR ERV1 0 2438 66 259 221 93 0 chr6 125016706 125016792 -57398450 + L1ME4a LINE L1 5992 6085 -36 345 269 12 99 chr6 125017397 125017543 -57397699 + L2 LINE L2 3158 3288 -25 1891 134 3 11 chr6 125017543 125017827 -57397415 - AluSx SINE Alu -17 295 14 345 269 12 99 chr6 125017827 125017851 -57397391 + L2 LINE L2 3288 3313 0 186 43 0 0 chr6 125018086 125018109 -57397133 + (T)n Simple_repeat Simple_repeat 1 23 0 253 337 48 12 chr6 125018137 125018220 -57397022 + MIR SINE MIR 17 102 -106 554 294 16 67 chr6 125019383 125019577 -57395665 - MLT1K LTR MaLR -190 398 215 444 128 0 0 chr6 125019594 125019672 -57395570 + (CA)n Simple_repeat Simple_repeat 2 79 0 225 0 0 0 chr6 125019674 125019699 -57395543 + (GA)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chr6 125020161 125020196 -57395046 + AT_rich Low_complexity Low_complexity 1 35 0 300 284 128 28 chr6 125020894 125021003 -57394239 - L2 LINE L2 -16 3256 3137 250 297 44 44 chr6 125021068 125021159 -57394083 - MIR SINE MIR -165 97 7 240 289 171 80 chr6 125021190 125021377 -57393865 - L2 LINE L2 -181 3091 2888 199 408 92 0 chr6 125021529 125021713 -57393529 - L2 LINE L2 -606 2708 2508 877 256 15 0 chr6 125021730 125021929 -57393313 + MIR SINE MIR 34 235 -27 397 345 7 49 chr6 125021978 125022282 -57392960 - L2 LINE L2 -889 2425 2135 27 49 0 0 chr6 125023854 125023895 -57391347 + AT_rich Low_complexity Low_complexity 1 41 0 580 354 55 29 chr6 125025673 125026091 -57389151 - L3 LINE CR1 -12 1565 1137 3264 133 50 2 chr6 125026350 125026853 -57388389 + MER1A DNA MER1_type 1 527 0 196 250 0 21 chr6 125026907 125026955 -57388287 - L3 LINE CR1 -7 1570 1524 319 212 61 20 chr6 125027169 125027268 -57387974 - MIR SINE MIR -113 149 47 2412 285 129 49 chr6 125027487 125028860 -57386382 - HAL1 LINE L1 -146 2361 783 2112 111 3 37 chr6 125028860 125029184 -57386058 - AluSp SINE Alu 0 313 1 2412 285 129 49 chr6 125029184 125029769 -57385473 - HAL1 LINE L1 -1724 783 246 474 296 62 4 chr6 125029848 125030091 -57385151 - L1ME4a LINE L1 -277 5844 5588 203 176 0 0 chr6 125032023 125032057 -57383185 + T-rich Low_complexity Low_complexity 3 36 0 207 346 55 8 chr6 125033006 125033133 -57382109 - MIR3 SINE MIR -50 158 26 863 211 28 42 chr6 125033650 125033863 -57381379 - MER20 DNA MER1_type -4 215 6 357 231 256 13 chr6 125034081 125034237 -57381005 - LTR33A LTR ERVL -5 518 325 311 109 43 0 chr6 125034338 125034384 -57380858 - LTR33A LTR ERVL -327 196 149 637 311 76 4 chr6 125034773 125034998 -57380244 - MIR SINE MIR -20 242 2 609 200 59 15 chr6 125035149 125035284 -57379958 - MIR SINE MIR -118 144 4 205 270 42 90 chr6 125035344 125035533 -57379709 - L2 LINE L2 -40 3273 3094 277 299 90 80 chr6 125036581 125036782 -57378460 + MIR SINE MIR 3 205 -57 255 307 132 0 chr6 125037072 125037186 -57378056 + MIR SINE MIR 126 254 -8 2319 199 27 35 chr6 125038795 125039313 -57375929 - MER67D LTR ERV1 0 514 1 230 164 18 0 chr6 125039460 125039515 -57375727 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 35 0 0 chr6 125039753 125039782 -57375460 + AT_rich Low_complexity Low_complexity 1 29 0 1816 209 3 32 chr6 125040162 125040302 -57374940 + MLT1A1 LTR MaLR 4 147 -218 2103 114 29 32 chr6 125040302 125040678 -57374564 - THE1C LTR MaLR 0 375 1 1816 209 3 32 chr6 125040678 125040910 -57374332 + MLT1A1 LTR MaLR 147 365 0 2159 103 10 0 chr6 125040988 125041278 -57373964 - AluSp SINE Alu -20 293 1 18649 96 8 2 chr6 125042033 125045516 -57369726 - L1PA7 LINE L1 0 6469 2953 5078 158 99 114 chr6 125045519 125047108 -57368134 - pTR5 LTR ERV1 0 2438 744 12384 126 9 64 chr6 125047108 125050129 -57365113 - L1PA7 LINE L1 -3504 2957 4 23 0 0 0 chr6 125050154 125050177 -57365065 + AT_rich Low_complexity Low_complexity 1 23 0 270 56 0 0 chr6 125051791 125051827 -57363415 + (CA)n Simple_repeat Simple_repeat 1 36 0 2554 95 8 0 chr6 125051878 125052235 -57363007 - L1PA11 LINE L1 0 6174 5815 2443 148 22 31 chr6 125052824 125052903 -57362339 - L1PA11 LINE L1 -590 5575 5497 2013 95 12 83 chr6 125052903 125053229 -57362013 - AluSx SINE Alu -9 303 1 2443 148 22 31 chr6 125053229 125053875 -57361367 - L1PA11 LINE L1 -668 5497 4865 244 229 16 0 chr6 125054727 125054788 -57360454 + MER103 DNA DNA 56 117 -49 23 33 0 0 chr6 125055108 125055138 -57360104 + AT_rich Low_complexity Low_complexity 1 30 0 554 246 0 17 chr6 125056078 125056196 -57359046 - FLAM_C SINE Alu -21 122 7 5687 108 35 23 chr6 125056232 125056762 -57358480 + L1MA3 LINE L1 5369 5916 -389 2320 98 0 0 chr6 125056762 125057068 -57358174 - AluY SINE Alu -5 306 1 5687 108 35 23 chr6 125057068 125057458 -57357784 + L1MA3 LINE L1 5916 6300 -5 205 322 46 0 chr6 125057640 125057727 -57357515 - L2 LINE L2 -549 2765 2675 237 338 121 30 chr6 125058136 125058467 -57356775 - L2 LINE L2 -1256 2058 1698 905 190 38 62 chr6 125059092 125059303 -57355939 + MER20 DNA MER1_type 5 210 -9 5524 164 21 40 chr6 125059423 125060615 -57354627 - L1MC2 LINE L1 -37 6307 5122 408 202 50 0 chr6 125060657 125060756 -57354486 - L1MC2 LINE L1 -974 5172 5069 21 36 0 0 chr6 125060862 125060890 -57354352 + AT_rich Low_complexity Low_complexity 1 28 0 497 321 62 21 chr6 125061947 125062190 -57353052 + L3b LINE CR1 1329 1581 -2 416 295 148 19 chr6 125063131 125063341 -57351901 + MIR SINE MIR 14 250 -12 250 318 106 26 chr6 125063458 125063609 -57351633 + MIR SINE MIR 86 248 -14 381 90 13 26 chr6 125063971 125064049 -57351193 + (TA)n Simple_repeat Simple_repeat 1 77 0 239 264 47 23 chr6 125064175 125064304 -57350938 - L1ME LINE L1 -218 5903 5772 273 164 0 18 chr6 125064886 125064941 -57350301 - MLT1D LTR MaLR -2 503 450 4411 62 4 11 chr6 125064969 125065516 -57349726 - SVA Other Other -3 1383 841 462 36 0 0 chr6 125065516 125065572 -57349670 + L1P LINE L1 3704 3759 -2387 2613 170 30 56 chr6 125065713 125066307 -57348935 - L1MC3 LINE L1 -1089 6696 6118 3072 253 53 15 chr6 125066310 125067876 -57347366 - L1MEc LINE L1 -3092 3123 1519 436 119 0 0 chr6 125069191 125069258 -57345984 - AluS SINE Alu -15 294 228 428 225 0 0 chr6 125069264 125069344 -57345898 + MER63 DNA MER1_type 679 758 -78 1096 282 58 34 chr6 125069823 125070238 -57345004 - LTR16A LTR ERVL -10 440 16 573 254 59 59 chr6 125070350 125070705 -57344537 - L1MEc LINE L1 -5174 1031 677 205 88 29 0 chr6 125070861 125070895 -57344347 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 237 292 42 52 chr6 125071893 125071989 -57343253 - MIR SINE MIR -64 144 50 30 27 0 0 chr6 125072255 125072292 -57342950 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 125074037 125074065 -57341177 + AT_rich Low_complexity Low_complexity 1 28 0 2416 86 0 0 chr6 125074104 125074405 -57340837 - AluY SINE Alu -10 301 1 478 253 137 0 chr6 125074666 125074812 -57340430 + L2 LINE L2 2393 2558 -756 322 290 118 43 chr6 125074994 125075332 -57339910 + MLT1L LTR MaLR 113 412 -99 459 224 115 0 chr6 125076194 125076368 -57338874 + MER5C DNA MER1_type 129 322 -2 571 258 78 56 chr6 125076378 125076735 -57338507 + L1ME LINE L1 5296 5660 -461 870 169 42 0 chr6 125077445 125077611 -57337631 + L1MA6 LINE L1 5890 6062 -238 1001 151 50 85 chr6 125077618 125077877 -57337365 + L1MB8 LINE L1 5928 6177 -1 273 192 54 54 chr6 125077958 125078088 -57337154 + L1M4 LINE L1 4302 4431 -1715 206 98 49 16 chr6 125078105 125078166 -57337076 + (TA)n Simple_repeat Simple_repeat 1 63 0 230 254 0 0 chr6 125078456 125078511 -57336731 + MIR3 SINE MIR 153 207 -1 508 340 33 19 chr6 125079769 125079984 -57335258 - MIR SINE MIR -42 220 3 361 297 71 28 chr6 125080013 125080195 -57335047 - MIR SINE MIR -27 235 46 572 146 48 131 chr6 125080365 125080463 -57334779 + MER53 DNA DNA 1 75 -114 2244 186 216 91 chr6 125080463 125081367 -57333875 + LTR28 LTR ERV1 4 1020 0 572 146 48 131 chr6 125081367 125081474 -57333768 + MER53 DNA DNA 75 189 0 234 251 180 30 chr6 125082817 125082984 -57332258 + MIR SINE MIR 60 251 -11 271 328 15 0 chr6 125084228 125084295 -57330947 + L2 LINE L2 3184 3251 -21 527 357 25 8 chr6 125084351 125084595 -57330647 - MIR SINE MIR 0 262 15 7555 170 29 21 chr6 125085120 125086688 -57328554 - L1 LINE L1 -787 5359 3779 983 329 54 19 chr6 125087110 125087481 -57327761 - LTR16A LTR ERVL -51 399 16 233 356 87 9 chr6 125088131 125088246 -57326996 + L2 LINE L2 3143 3266 -6 245 253 6 114 chr6 125089036 125089073 -57326169 - HAL1 LINE L1 -152 2355 2316 1754 148 63 36 chr6 125089073 125089438 -57325804 - THE1C LTR MaLR 0 375 1 245 253 6 114 chr6 125089438 125089558 -57325684 - HAL1 LINE L1 -191 2316 2215 257 297 14 0 chr6 125089561 125089635 -57325607 + (CATA)n Simple_repeat Simple_repeat 2 76 0 282 103 0 0 chr6 125089719 125089758 -57325484 + MADE1 DNA Mariner 42 80 0 1328 259 138 31 chr6 125089841 125090393 -57324849 - HAL1 LINE L1 -512 1995 1385 799 228 0 0 chr6 125090400 125090558 -57324684 - AluJb SINE Alu -19 293 136 2322 262 127 36 chr6 125090668 125091854 -57323388 - HAL1 LINE L1 -1149 1358 65 687 218 0 0 chr6 125094006 125094130 -57321112 + FLAM_C SINE Alu 1 124 -19 638 191 9 0 chr6 125095281 125095396 -57319846 + LTR57 LTR ERVL 1 116 -295 1527 156 40 18 chr6 125095472 125095748 -57319494 + LTR57 LTR ERVL 130 411 0 344 244 88 71 chr6 125096252 125096490 -57318752 - L1M4 LINE L1 -1392 4754 4513 1917 249 72 17 chr6 125097045 125097568 -57317674 + MLT1G LTR MaLR 1 516 -74 1247 176 27 0 chr6 125097571 125097792 -57317450 + MER92B LTR ERV1 2 228 -408 208 253 40 27 chr6 125098474 125098549 -57316693 + MIR SINE MIR 50 125 -137 599 158 0 0 chr6 125098566 125098661 -57316581 + MSTC LTR MaLR 10 104 -324 1052 107 0 0 chr6 125099580 125099729 -57315513 - AluSc SINE Alu 0 309 161 527 291 0 0 chr6 125100294 125100421 -57314821 - L2 LINE L2 -1 3312 3186 630 202 16 0 chr6 125100485 125100609 -57314633 + L2 LINE L2 3182 3307 -6 186 147 29 0 chr6 125101599 125101633 -57313609 - MIR SINE MIR -13 249 215 351 285 23 100 chr6 125102119 125102249 -57312993 + MIR SINE MIR 30 149 -59 190 360 0 12 chr6 125104041 125104127 -57311115 + MIR SINE MIR 172 256 -6 1562 194 3 3 chr6 125105207 125105500 -57309742 + AluJo SINE Alu 20 312 0 1812 137 16 26 chr6 125106002 125106308 -57308934 - AluSx SINE Alu -7 305 3 3819 67 0 0 chr6 125106396 125106890 -57308352 + L1PA4 LINE L1 5661 6154 -1 3196 69 19 2 chr6 125107122 125107541 -57307701 - SVA Other Other -237 1149 724 1631 205 136 0 chr6 125107547 125107938 -57307304 - MLT1D LTR MaLR -61 444 1 250 245 19 133 chr6 125108570 125108803 -57306439 - MIR3 SINE MIR -28 234 9 6941 150 45 115 chr6 125108883 125110707 -57304535 + pTR5 LTR ERV1 742 2438 0 664 269 202 30 chr6 125112373 125112934 -57302308 - MLT2F LTR ERVL -1 662 1 365 339 41 0 chr6 125112970 125113091 -57302151 - L2 LINE L2 -10 3262 3137 927 339 123 20 chr6 125113188 125113784 -57301458 - L2 LINE L2 -639 2675 2019 2154 200 36 11 chr6 125113814 125114348 -57300894 - Charlie1 DNA MER1_type -5 2756 2210 279 317 24 0 chr6 125114354 125114436 -57300806 - Charlie1 DNA MER1_type -2677 84 1 764 315 156 24 chr6 125114439 125114944 -57300298 - L2 LINE L2 -1367 1947 1376 297 287 69 0 chr6 125115044 125115145 -57300097 + MIR3 SINE MIR 95 202 -6 237 287 110 49 chr6 125115323 125115487 -57299755 + L1ME LINE L1 5571 5744 -377 330 67 0 0 chr6 125117013 125117058 -57298184 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr6 125117238 125117259 -57297983 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 125117736 125117757 -57297485 + AT_rich Low_complexity Low_complexity 1 21 0 1059 106 11 11 chr6 125118478 125118593 -57296649 + (TTCC)n Simple_repeat Simple_repeat 1 294 0 1059 106 11 11 chr6 125118593 125118772 -57296470 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1469 178 62 10 chr6 125118798 125119090 -57296152 - AluJo SINE Alu -5 307 1 262 283 43 11 chr6 125120047 125120139 -57295103 - MIR SINE MIR -69 139 45 481 297 206 20 chr6 125120383 125120737 -57294505 + L3 LINE CR1 427 846 -731 257 227 29 122 chr6 125121717 125121889 -57293353 - MER103 DNA DNA -9 157 2 2028 141 0 0 chr6 125122321 125122620 -57292622 + AluSx SINE Alu 1 299 -13 38 0 0 0 chr6 125123563 125123601 -57291641 + AT_rich Low_complexity Low_complexity 1 38 0 7264 42 14 0 chr6 125123601 125124691 -57290551 - L1PA5 LINE L1 -8 6146 5051 17065 48 3 1 chr6 125124691 125126845 -57288397 + L1PA5 LINE L1 2889 5048 -1098 28 0 0 0 chr6 125127448 125127476 -57287766 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 125127680 125127709 -57287533 + AT_rich Low_complexity Low_complexity 1 29 0 208 222 0 0 chr6 125127766 125127811 -57287431 + (TG)n Simple_repeat Simple_repeat 1 45 0 39 88 0 0 chr6 125128785 125128887 -57286355 + AT_rich Low_complexity Low_complexity 1 102 0 2075 119 18 0 chr6 125128900 125129185 -57286057 + AluSq SINE Alu 7 296 -17 21 95 0 0 chr6 125129189 125129252 -57285990 + AT_rich Low_complexity Low_complexity 1 63 0 23 54 0 0 chr6 125129912 125129949 -57285293 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr6 125131476 125131506 -57283736 + AT_rich Low_complexity Low_complexity 1 30 0 299 80 40 0 chr6 125131566 125131616 -57283626 + CT-rich Low_complexity Low_complexity 1 52 0 1711 141 34 48 chr6 125131962 125132253 -57282989 + AluSx SINE Alu 4 290 -22 226 235 0 20 chr6 125132494 125132545 -57282697 + GA-rich Low_complexity Low_complexity 2 51 0 1530 187 80 37 chr6 125132668 125133042 -57282200 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr6 125134097 125134121 -57281121 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr6 125134137 125134168 -57281074 + AT_rich Low_complexity Low_complexity 1 31 0 588 306 81 78 chr6 125136097 125136701 -57278541 + L1MDa LINE L1 1501 2106 -4434 24 0 0 0 chr6 125137335 125137359 -57277883 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 125138055 125138079 -57277163 + AT_rich Low_complexity Low_complexity 1 24 0 309 292 38 70 chr6 125138086 125138271 -57276971 + HAL1 LINE L1 6 184 -2323 239 0 32 0 chr6 125138272 125138303 -57276939 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1551 248 46 22 chr6 125138565 125139021 -57276221 - MLT1C LTR MaLR 0 467 1 234 328 31 8 chr6 125139083 125139211 -57276031 + L1MCa LINE L1 1503 1633 -4793 26 0 0 0 chr6 125139992 125140018 -57275224 + AT_rich Low_complexity Low_complexity 1 26 0 583 247 11 23 chr6 125143265 125143439 -57271803 + MER112 DNA MER1_type 1 172 -88 2484 84 0 0 chr6 125143904 125144215 -57271027 + AluY SINE Alu 1 311 0 488 176 10 0 chr6 125144218 125144320 -57270922 + (TA)n Simple_repeat Simple_repeat 1 103 0 451 177 76 86 chr6 125144738 125144936 -57270306 - L1ME2 LINE L1 -6 6158 5963 523 169 0 0 chr6 125144942 125145031 -57270211 - LTR40b LTR ERVL -5 457 369 334 180 0 34 chr6 125145474 125145563 -57269679 + L1MA8 LINE L1 6205 6290 -1 5400 166 29 14 chr6 125145616 125146940 -57268302 - L1MA4 LINE L1 -1 6299 4962 2176 133 0 0 chr6 125146940 125147242 -57268000 - AluSg SINE Alu -8 302 1 5400 166 29 14 chr6 125147242 125147286 -57267956 - L1MA4 LINE L1 -1338 4962 4920 195 129 0 0 chr6 125147286 125147317 -57267925 + (TC)n Simple_repeat Simple_repeat 2 32 0 325 58 39 0 chr6 125147323 125147375 -57267867 + (TTTCC)n Simple_repeat Simple_repeat 5 58 0 1530 167 64 19 chr6 125147386 125147650 -57267592 - AluSx SINE Alu -36 276 1 730 154 23 0 chr6 125147653 125147783 -57267459 - L1MA4 LINE L1 -1214 4932 4800 31315 103 21 31 chr6 125148180 125151971 -57263271 + L1PA7 LINE L1 10 3841 -2628 3091 165 23 14 chr6 125151971 125152546 -57262696 - LTR22 LTR ERVK 0 580 1 31315 103 21 31 chr6 125152546 125155129 -57260113 + L1PA7 LINE L1 3841 6449 -20 249 33 0 0 chr6 125155129 125155159 -57260083 + (TG)n Simple_repeat Simple_repeat 2 31 0 252 143 0 0 chr6 125155160 125155202 -57260040 + (TA)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr6 125155338 125155368 -57259874 + AT_rich Low_complexity Low_complexity 1 30 0 198 103 0 0 chr6 125155529 125155558 -57259684 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 311 274 121 31 chr6 125156003 125156390 -57258852 - L1M4 LINE L1 -3519 2627 2206 4423 97 70 139 chr6 125156509 125157685 -57257557 - pTR5 LTR ERV1 0 2429 31 467 262 90 34 chr6 125158150 125158307 -57256935 - HAL1 LINE L1 -861 1646 1470 2559 110 53 12 chr6 125158307 125158724 -57256518 + MER61C LTR ERV1 1 434 0 467 262 90 34 chr6 125158724 125158799 -57256443 - HAL1 LINE L1 -1037 1470 1401 397 385 8 20 chr6 125159217 125159466 -57255776 - L1M4 LINE L1 -1836 4310 4065 21 36 0 0 chr6 125159691 125159719 -57255523 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 125160287 125160315 -57254927 + AT_rich Low_complexity Low_complexity 1 28 0 483 247 48 108 chr6 125162745 125162911 -57252331 - MLT1H LTR MaLR -14 535 375 817 227 120 5 chr6 125162933 125163149 -57252093 - MLT1H LTR MaLR -296 253 13 830 268 35 75 chr6 125164015 125164436 -57250806 - L2 LINE L2 -275 3038 2623 567 321 60 53 chr6 125164438 125164756 -57250486 + LTR33A LTR ERVL 4 323 -200 486 257 0 0 chr6 125164911 125165016 -57250226 - L2 LINE L2 -689 2625 2521 1688 232 22 56 chr6 125165041 125165489 -57249753 + MER21B LTR ERV1 32 464 -399 1071 274 38 35 chr6 125165490 125165858 -57249384 - L2 LINE L2 -793 2521 2153 797 222 43 48 chr6 125165921 125165988 -57249254 + MER3 DNA MER1_type 3 69 -140 2191 193 43 22 chr6 125165988 125166481 -57248761 - MLT1D LTR MaLR 0 505 3 797 222 43 48 chr6 125166481 125166620 -57248622 + MER3 DNA MER1_type 69 208 -1 245 186 0 0 chr6 125166586 125166629 -57248613 - MER3 DNA MER1_type -127 82 40 * 613 248 53 0 chr6 125166629 125166762 -57248480 - L2 LINE L2 -2011 1303 1164 2247 141 17 11 chr6 125166773 125167135 -57248107 - THE1B LTR MaLR 0 364 1 2199 96 3 7 chr6 125167298 125167590 -57247652 - AluSx SINE Alu -21 291 1 829 124 0 0 chr6 125167605 125167718 -57247524 - AluSg SINE Alu -197 113 1 345 333 17 17 chr6 125168191 125168311 -57246931 + L1MEd LINE L1 505 624 -5495 455 227 0 102 chr6 125168448 125168576 -57246666 + FLAM_A SINE Alu 2 116 -17 6916 97 27 0 chr6 125169042 125170043 -57245199 + L1MA2 LINE L1 5277 6304 0 22 0 0 0 chr6 125170269 125170291 -57244951 + AT_rich Low_complexity Low_complexity 1 22 0 385 244 61 0 chr6 125171688 125171803 -57243439 - MER103 DNA DNA -2 164 43 279 236 302 0 chr6 125172765 125172871 -57242371 + MIR SINE MIR 1 138 -124 1090 202 90 4 chr6 125172872 125173139 -57242103 + L1ME2 LINE L1 5630 5919 -245 789 284 113 62 chr6 125173200 125173633 -57241609 - LTR16B LTR ERVL -6 458 4 514 236 20 61 chr6 125173644 125173851 -57241391 + L1ME2 LINE L1 5979 6332 -2 2183 116 0 0 chr6 125174443 125174736 -57240506 - AluSx SINE Alu -19 293 1 1716 168 30 20 chr6 125175083 125175381 -57239861 + AluJb SINE Alu 2 302 -10 406 293 109 6 chr6 125177028 125177202 -57238040 - L2 LINE L2 -4 3309 3118 264 255 166 25 chr6 125177223 125177380 -57237862 - MIR SINE MIR 0 262 84 466 267 28 44 chr6 125177409 125177589 -57237653 - L2 LINE L2 0 3313 3137 807 219 122 15 chr6 125177589 125177785 -57237457 + MLT1D LTR MaLR 288 504 -1 4948 225 54 69 chr6 125178437 125178830 -57236412 + L1ME LINE L1 24 421 -6404 1453 187 15 8 chr6 125178830 125179097 -57236145 - AluJo SINE Alu -26 286 18 4948 225 54 69 chr6 125179097 125180870 -57234372 + L1ME LINE L1 421 2335 -4490 22 35 0 0 chr6 125180901 125180930 -57234312 + AT_rich Low_complexity Low_complexity 1 29 0 413 313 35 71 chr6 125181072 125181411 -57233831 + L1ME LINE L1 4597 4923 -1721 917 221 51 0 chr6 125181667 125181862 -57233380 - MER3 DNA MER1_type -4 205 1 294 237 62 0 chr6 125181884 125181981 -57233261 + L1ME LINE L1 6003 6105 -514 2006 139 37 37 chr6 125182212 125182587 -57232655 + THE1C LTR MaLR 1 375 0 1309 213 3 7 chr6 125184309 125184619 -57230623 - AluSq SINE Alu -1 312 4 2394 90 7 0 chr6 125185122 125185432 -57229810 - AluSq SINE Alu -1 312 1 321 307 70 9 chr6 125185698 125185812 -57229430 + MIR3 SINE MIR 63 183 -25 831 167 29 35 chr6 125185862 125186036 -57229206 - L1MD1 LINE L1 -5 6237 6065 213 344 75 11 chr6 125186832 125186925 -57228317 - L2 LINE L2 0 3272 3174 281 221 46 8 chr6 125186930 125187061 -57228181 + (TA)n Simple_repeat Simple_repeat 2 137 0 937 248 75 92 chr6 125187212 125187636 -57227606 - MLT1G3 LTR MaLR -178 417 1 312 328 52 20 chr6 125188160 125188410 -57226832 + MIR SINE MIR 2 259 -3 235 380 85 27 chr6 125189175 125189470 -57225772 + L2 LINE L2 211 522 -2792 342 371 7 0 chr6 125189512 125189663 -57225579 - HERV16 LTR ERVL -2387 3377 3226 260 333 10 10 chr6 125189779 125189878 -57225364 - LTR40b LTR ERVL -179 283 185 1390 343 58 22 chr6 125190119 125190776 -57224466 - HERV16 LTR ERVL -1911 3085 2460 652 299 20 69 chr6 125190811 125191115 -57224127 - HERV16 LTR ERVL -3296 2358 2070 278 346 29 0 chr6 125191482 125191586 -57223656 - HERV16 LTR ERVL -3418 1578 1472 2275 92 0 0 chr6 125191602 125191909 -57223333 - AluSg1 SINE Alu 0 307 1 1717 318 65 28 chr6 125192029 125193170 -57222072 - HERV16 LTR ERVL -3609 1387 191 2035 142 0 0 chr6 125194839 125195147 -57220095 + AluSq SINE Alu 1 308 0 327 25 0 0 chr6 125196926 125196966 -57218276 + (CAA)n Simple_repeat Simple_repeat 3 42 0 310 267 68 41 chr6 125197288 125197434 -57217808 + MIR3 SINE MIR 52 201 -7 585 13 0 25 chr6 125197776 125197855 -57217387 + L1PA2 LINE L1 6078 6154 -1 1627 140 71 23 chr6 125197926 125198234 -57217008 + THE1C LTR MaLR 1 323 -52 670 258 113 18 chr6 125200997 125201141 -57214101 + L1MC4 LINE L1 7735 7864 -178 330 98 0 0 chr6 125201141 125201192 -57214050 + (CA)n Simple_repeat Simple_repeat 2 52 0 670 258 113 18 chr6 125201192 125201322 -57213920 + L1MC4 LINE L1 7864 8035 -7 371 285 93 26 chr6 125201572 125201723 -57213519 - MLT1J2 LTR MaLR -289 161 1 249 363 9 9 chr6 125201773 125201886 -57213356 - L2 LINE L2 -2 3270 3158 266 51 0 0 chr6 125202620 125202659 -57212583 - Alu SINE Alu -2 300 262 289 331 24 8 chr6 125203049 125203173 -57212069 + MIR SINE MIR 19 144 -64 30 27 0 0 chr6 125203331 125203368 -57211874 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 125203497 125203525 -57211717 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 125203767 125203800 -57211442 + AT_rich Low_complexity Low_complexity 1 33 0 285 265 15 15 chr6 125204904 125204972 -57210270 - MIR SINE MIR -87 121 54 213 154 0 0 chr6 125205467 125205506 -57209736 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 24 67 0 0 chr6 125205843 125205888 -57209354 + AT_rich Low_complexity Low_complexity 1 45 0 12632 228 25 41 chr6 125208282 125211251 -57203991 - L1PB1 LINE L1 -5 6210 3172 676 107 0 27 chr6 125211251 125211363 -57203879 - AluSq/x SINE Alu -198 115 7 12632 228 25 41 chr6 125211363 125212960 -57202282 - L1PB1 LINE L1 -3043 3172 1551 1675 181 6 0 chr6 125214122 125214460 -57200782 - L1 LINE L1 -1249 4897 4558 289 284 100 113 chr6 125214463 125214773 -57200469 + L2 LINE L2 2910 3215 -57 24 32 0 0 chr6 125215828 125215859 -57199383 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr6 125215868 125215890 -57199352 + AT_rich Low_complexity Low_complexity 1 22 0 2058 100 0 88 chr6 125216173 125216512 -57198730 + AluSg SINE Alu 1 309 -1 244 292 108 39 chr6 125216968 125217098 -57198144 - LTR16C LTR ERVL -4 487 349 204 225 0 0 chr6 125218910 125218950 -57196292 + (TG)n Simple_repeat Simple_repeat 2 41 0 1743 157 10 7 chr6 125219179 125219472 -57195770 + AluSx SINE Alu 1 294 -18 1511 133 16 35 chr6 125219864 125220003 -57195239 + MER2 DNA MER2_type 1 134 -211 1526 116 122 66 chr6 125220003 125220322 -57194920 + MER1B DNA MER1_type 1 337 0 1511 133 16 35 chr6 125220322 125220437 -57194805 + MER2 DNA MER2_type 134 250 -95 3222 202 14 53 chr6 125220439 125220931 -57194311 + L1MA9 LINE L1 5494 5943 -369 2173 126 3 0 chr6 125220931 125221232 -57194010 + AluSq SINE Alu 1 302 -11 3222 202 14 53 chr6 125221232 125221566 -57193676 + L1MA9 LINE L1 5943 6288 -24 22 0 0 0 chr6 125222449 125222471 -57192771 + AT_rich Low_complexity Low_complexity 1 22 0 1392 142 0 19 chr6 125223379 125223590 -57191652 - AluSg/x SINE Alu -19 293 87 2281 78 10 7 chr6 125224121 125224416 -57190826 + AluSc SINE Alu 1 296 -13 203 362 87 8 chr6 125224854 125224981 -57190261 + L2 LINE L2 3136 3272 0 440 286 157 11 chr6 125225845 125226030 -57189212 + MIR SINE MIR 43 254 -8 187 283 0 17 chr6 125226611 125226671 -57188571 - L2 LINE L2 -6 3307 3249 389 305 193 18 chr6 125227174 125227397 -57187845 + MIR SINE MIR 1 262 0 296 217 87 0 chr6 125228897 125228966 -57186276 - L2 LINE L2 0 3272 3198 180 111 0 0 chr6 125229008 125229035 -57186207 + (A)n Simple_repeat Simple_repeat 1 27 0 1966 107 46 4 chr6 125229698 125229978 -57185264 + AluY SINE Alu 1 292 -19 182 156 0 0 chr6 125231848 125231880 -57183362 + A-rich Low_complexity Low_complexity 1 32 0 46 54 0 0 chr6 125231984 125232058 -57183184 + AT_rich Low_complexity Low_complexity 1 74 0 38 61 0 0 chr6 125232406 125232472 -57182770 + AT_rich Low_complexity Low_complexity 1 66 0 25 0 0 0 chr6 125233249 125233274 -57181968 + AT_rich Low_complexity Low_complexity 1 25 0 323 348 111 32 chr6 125234705 125234958 -57180284 - L2 LINE L2 -338 2976 2704 222 211 19 0 chr6 125234993 125235045 -57180197 + (CAA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 125235517 125235538 -57179704 + AT_rich Low_complexity Low_complexity 1 21 0 711 210 66 31 chr6 125236645 125236902 -57178340 - LTR37B LTR ERV1 -5 463 198 495 246 76 18 chr6 125237063 125237234 -57178008 - LTR37B LTR ERV1 -281 187 7 1702 152 3 21 chr6 125237265 125237574 -57177668 + AluSx SINE Alu 5 312 0 273 197 0 0 chr6 125237655 125237726 -57177516 + (TA)n Simple_repeat Simple_repeat 2 72 0 440 297 7 35 chr6 125238535 125238680 -57176562 - MER5A DNA MER1_type -14 175 35 196 340 85 11 chr6 125239224 125239318 -57175924 - L2 LINE L2 -3 3269 3169 402 21 0 0 chr6 125239841 125239888 -57175354 + (TG)n Simple_repeat Simple_repeat 1 47 0 2173 112 0 0 chr6 125241431 125241727 -57173515 - AluSx SINE Alu -16 296 1 181 361 105 8 chr6 125243406 125243539 -57171703 + MIR SINE MIR 11 156 -106 194 295 146 84 chr6 125243831 125244584 -57170658 + L2 LINE L2 1699 2498 -816 1574 239 106 16 chr6 125244593 125245037 -57170205 + LTR40a LTR ERVL 32 515 -4 2173 97 3 0 chr6 125245307 125245597 -57169645 - AluSc SINE Alu -18 291 1 276 214 36 0 chr6 125245758 125245814 -57169428 + MIR SINE MIR 204 261 -1 294 29 0 0 chr6 125246149 125246184 -57169058 + (CA)n Simple_repeat Simple_repeat 2 36 0 239 54 27 0 chr6 125246777 125246814 -57168428 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 230 147 0 103 chr6 125247040 125247108 -57168134 + L1MC4 LINE L1 6642 6702 -1340 418 290 43 9 chr6 125247321 125247507 -57167735 + MIR SINE MIR 3 262 0 2551 58 0 3 chr6 125248340 125248651 -57166591 + AluY SINE Alu 1 310 -1 1807 176 0 10 chr6 125249463 125249764 -57165478 + AluJo SINE Alu 4 301 -11 198 150 0 0 chr6 125250220 125250260 -57164982 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 30 0 0 chr6 125250563 125250596 -57164646 + AT_rich Low_complexity Low_complexity 1 33 0 535 177 35 9 chr6 125251204 125251317 -57163925 - U5 snRNA snRNA 0 116 1 2081 194 55 2 chr6 125251960 125252398 -57162844 + MER65C LTR ERV1 1 461 0 182 243 14 54 chr6 125252659 125252733 -57162509 - MER5A DNA MER1_type -108 81 11 24 0 0 0 chr6 125252748 125252772 -57162470 + AT_rich Low_complexity Low_complexity 1 24 0 1640 187 18 26 chr6 125253966 125254308 -57160934 - MER44D DNA MER2_type 0 609 1 804 264 59 34 chr6 125254388 125254828 -57160414 - L1MC5 LINE L1 -202 7759 7309 1541 109 13 4 chr6 125254841 125255104 -57160138 - AluSc SINE Alu 0 309 65 2418 162 25 7 chr6 125255363 125255796 -57159446 - MER6 DNA MER2_type 0 865 165 2270 107 0 3 chr6 125256779 125257088 -57158154 - AluSg SINE Alu 0 310 3 24 0 0 0 chr6 125257172 125257196 -57158046 + AT_rich Low_complexity Low_complexity 1 24 0 304 294 124 40 chr6 125257277 125257454 -57157788 - MIR SINE MIR -34 228 37 21 0 0 0 chr6 125257469 125257490 -57157752 + AT_rich Low_complexity Low_complexity 1 21 0 1806 61 4 0 chr6 125257590 125257821 -57157421 + L1PA6 LINE L1 5921 6152 -2 21 36 0 0 chr6 125257821 125257849 -57157393 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr6 125258017 125258049 -57157193 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 35 0 0 chr6 125258290 125258319 -57156923 + (TTG)n Simple_repeat Simple_repeat 2 30 0 500 262 35 7 chr6 125263082 125263227 -57152015 - MIR SINE MIR -13 249 101 2206 106 3 7 chr6 125264388 125264690 -57150552 + AluSx SINE Alu 1 301 -11 209 235 0 10 chr6 125264696 125264798 -57150444 + (TA)n Simple_repeat Simple_repeat 1 101 0 264 77 0 0 chr6 125264800 125264839 -57150403 + (TG)n Simple_repeat Simple_repeat 2 40 0 819 265 42 0 chr6 125265038 125265253 -57149989 + MIR SINE MIR 13 236 -26 2490 219 90 65 chr6 125265558 125266362 -57148880 - MER21B LTR ERV1 -21 842 19 399 234 13 0 chr6 125266384 125266461 -57148781 - MER21B LTR ERV1 -773 90 13 24 0 0 0 chr6 125267442 125267466 -57147776 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr6 125267676 125267698 -57147544 + (A)n Simple_repeat Simple_repeat 1 22 0 * 222 91 0 0 chr6 125267697 125267730 -57147512 + (GA)n Simple_repeat Simple_repeat 2 34 0 230 206 238 0 chr6 125267755 125267818 -57147424 + MER103 DNA DNA 22 99 -67 849 247 32 4 chr6 125268043 125268290 -57146952 + L1M4 LINE L1 2318 2571 -3575 352 353 18 47 chr6 125269334 125269504 -57145738 + MIR3 SINE MIR 37 201 -7 194 227 23 0 chr6 125270123 125270167 -57145075 + L2 LINE L2 3224 3268 -4 1777 153 14 0 chr6 125270398 125270673 -57144569 - AluSx SINE Alu -29 283 5 1113 192 14 52 chr6 125270762 125271048 -57144194 - L1M4 LINE L1 -2446 3700 3426 673 254 0 64 chr6 125271367 125271540 -57143702 - MER58C DNA MER1_type 0 215 54 1836 148 7 14 chr6 125272104 125272395 -57142847 + AluJb SINE Alu 2 290 -22 29 60 0 0 chr6 125273186 125273236 -57142006 + AT_rich Low_complexity Low_complexity 1 50 0 6302 114 60 0 chr6 125373447 125374480 -57040762 + MER57-int LTR ERV1 5777 6918 -619 2838 152 39 0 chr6 125374816 125375310 -57039932 + L1 LINE L1 3919 4431 -1715 1821 159 134 0 chr6 125375310 125375661 -57039581 - MER57A LTR ERV1 -5 398 1 988 106 6 0 chr6 125375671 125375832 -57039410 + L1 LINE L1 4456 4617 -1529 6607 184 17 26 chr6 125375932 125376615 -57038627 - L1P4 LINE L1 -427 5739 5051 1575 164 81 36 chr6 125376615 125376974 -57038268 - THE1C LTR MaLR 0 375 1 6607 184 17 26 chr6 125376974 125378126 -57037116 - L1P4 LINE L1 -1115 5051 3922 802 306 25 34 chr6 125378371 125378724 -57036518 + MLT1I LTR MaLR 58 407 -2 507 221 0 0 chr6 125379220 125379315 -57035927 - MER58B DNA MER1_type -18 323 229 234 283 117 14 chr6 125379432 125379577 -57035665 + L2 LINE L2 3111 3270 -43 855 168 123 27 chr6 125379854 125380074 -57035168 - L1P LINE L1 -916 5230 4990 * 5388 97 41 2 chr6 125380066 125380928 -57034314 + L1PA13 LINE L1 5265 6159 -4 1679 212 82 5 chr6 125380962 125381411 -57033831 - LTR54B LTR ERV1 -7 491 8 2372 87 3 0 chr6 125381860 125382158 -57033084 + AluSp SINE Alu 1 299 -14 560 245 82 51 chr6 125382411 125382607 -57032635 - MIR SINE MIR -56 206 5 2125 112 0 7 chr6 125382716 125383024 -57032218 + AluSg SINE Alu 1 306 0 2349 93 6 3 chr6 125383531 125383910 -57031332 - AluSq SINE Alu 0 380 1 343 384 29 23 chr6 125384887 125385059 -57030183 - L2 LINE L2 -589 2725 2553 1058 270 145 21 chr6 125385506 125385873 -57029369 - L1M4 LINE L1 -4878 1977 1657 6679 68 12 27 chr6 125385873 125387425 -57027817 - L1PA6 LINE L1 0 6154 4614 1058 270 145 21 chr6 125387425 125387668 -57027574 - L1M4 LINE L1 -5198 1657 1445 2189 111 3 7 chr6 125387668 125387965 -57027277 - AluSg SINE Alu -14 296 1 1058 270 145 21 chr6 125387965 125388057 -57027185 - L1M4 LINE L1 -5410 1445 1187 38440 67 11 9 chr6 125388072 125393532 -57021710 + L1PA5 LINE L1 2 5482 -672 2478 81 0 0 chr6 125393532 125393842 -57021400 + AluY SINE Alu 1 310 -1 38440 67 11 9 chr6 125393842 125394503 -57020739 + L1PA5 LINE L1 5482 6140 -14 290 246 9 0 chr6 125394508 125394622 -57020620 + (TA)n Simple_repeat Simple_repeat 1 115 0 300 287 96 37 chr6 125394671 125394807 -57020435 - L1M4 LINE L1 -5683 1172 1029 417 264 81 27 chr6 125395074 125395348 -57019894 - L1M4 LINE L1 -6335 520 12 219 274 157 49 chr6 125397473 125397575 -57017667 + MIR3 SINE MIR 90 202 -6 265 242 45 0 chr6 125398265 125398331 -57016911 + CT-rich Low_complexity Low_complexity 1 69 0 180 97 0 0 chr6 125398538 125398569 -57016673 + (TG)n Simple_repeat Simple_repeat 2 32 0 326 308 125 24 chr6 125398901 125399109 -57016133 - MIR SINE MIR 0 262 34 25 31 0 0 chr6 125399251 125399283 -57015959 + AT_rich Low_complexity Low_complexity 1 32 0 242 316 26 53 chr6 125399637 125399789 -57015453 - MIR SINE MIR 0 262 115 247 221 15 15 chr6 125400367 125400435 -57014807 + (CATA)n Simple_repeat Simple_repeat 4 71 0 556 277 83 32 chr6 125400436 125400746 -57014496 - L1ME LINE L1 -341 5780 5447 302 107 0 71 chr6 125401718 125401774 -57013468 + Charlie5 DNA MER1_type 15 66 -2546 486 171 57 29 chr6 125401794 125401934 -57013308 + Charlie5 DNA MER1_type 2436 2579 -33 309 341 65 29 chr6 125401976 125402146 -57013096 - MIR3 SINE MIR -8 200 25 2390 68 0 0 chr6 125402637 125402932 -57012310 + AluY SINE Alu 1 295 -16 283 202 46 55 chr6 125404378 125404487 -57010755 - MER112 DNA MER1_type -6 254 147 2509 65 82 11 chr6 125405376 125405743 -57009499 + L1PA10 LINE L1 5768 6160 -8 2081 116 17 3 chr6 125406443 125406745 -57008497 - AluSg SINE Alu -4 306 1 1001 190 0 0 chr6 125406896 125407054 -57008188 + FRAM SINE Alu 1 158 -8 408 281 110 24 chr6 125407437 125407601 -57007641 + MER5B DNA MER1_type 1 178 0 711 266 16 16 chr6 125407609 125407742 -57007500 - MER5A DNA MER1_type 0 189 54 1316 208 99 18 chr6 125407742 125408084 -57007158 + MLT1A2 LTR MaLR 1 370 -4 711 266 16 16 chr6 125408084 125408138 -57007104 - MER5A DNA MER1_type -134 55 2 388 275 8 33 chr6 125408139 125408259 -57006983 - MER5B DNA MER1_type -61 117 1 228 270 68 14 chr6 125408259 125408330 -57006912 - MIR SINE MIR -98 164 90 272 333 23 11 chr6 125408613 125408790 -57006452 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 325 314 77 26 chr6 125409344 125409500 -57005742 + MIR3 SINE MIR 14 177 -31 22 0 0 0 chr6 125410119 125410141 -57005101 + AT_rich Low_complexity Low_complexity 1 22 0 2087 123 3 16 chr6 125410215 125410524 -57004718 - AluSq SINE Alu -8 305 1 429 219 181 45 chr6 125410546 125410644 -57004598 - MER5B DNA MER1_type 0 178 95 2248 81 7 14 chr6 125410644 125410939 -57004303 - AluY SINE Alu -18 293 1 429 219 181 45 chr6 125410939 125410995 -57004247 - MER5B DNA MER1_type -83 95 3 434 288 28 28 chr6 125411005 125411182 -57004060 + MER5B DNA MER1_type 1 177 -1 443 328 92 31 chr6 125411429 125411658 -57003584 - MIR SINE MIR -1 261 19 261 331 97 8 chr6 125412093 125412217 -57003025 + MIR3 SINE MIR 3 137 -71 215 182 0 0 chr6 125413566 125413599 -57001643 + MER91 DNA MER1_type 136 168 -22 370 358 161 26 chr6 125413744 125414166 -57001076 + L3 LINE CR1 658 1136 -441 219 281 61 24 chr6 125414219 125414301 -57000941 + L3 LINE CR1 1260 1344 -233 586 202 45 79 chr6 125414456 125414634 -57000608 - MER5B DNA MER1_type -6 172 1 271 224 0 82 chr6 125414776 125414861 -57000381 + MIR SINE MIR 185 262 0 344 272 95 27 chr6 125414866 125415013 -57000229 - MIR SINE MIR -78 184 28 2352 26 0 0 chr6 125417573 125417838 -56997404 + AluY SINE Alu 1 265 -46 180 0 0 0 chr6 125417841 125417861 -56997381 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2146 94 0 34 chr6 125418459 125418757 -56996485 + AluSg SINE Alu 1 288 -22 2324 157 39 14 chr6 125419921 125420336 -56994906 - MSTC LTR MaLR -3 425 1 975 98 0 0 chr6 125420771 125420893 -56994349 + FRAM SINE Alu 28 149 -27 449 317 50 22 chr6 125423493 125423673 -56991569 + L3b LINE CR1 1277 1461 -122 21 0 0 0 chr6 125423990 125424011 -56991231 + AT_rich Low_complexity Low_complexity 1 21 0 382 192 77 10 chr6 125424022 125424126 -56991116 - L1MA9 LINE L1 -22 6290 6180 604 281 50 41 chr6 125426886 125427107 -56988135 + MIR SINE MIR 40 262 0 2103 167 65 9 chr6 125427176 125427424 -56987818 - MLT1C LTR MaLR -2 624 391 315 0 0 0 chr6 125427424 125427459 -56987783 + (TG)n Simple_repeat Simple_repeat 2 36 0 2103 167 65 9 chr6 125427459 125427646 -56987596 - MLT1C LTR MaLR -235 391 1 232 274 168 0 chr6 125428494 125428589 -56986653 - L3 LINE CR1 -7 1570 1460 423 278 60 0 chr6 125429003 125429136 -56986106 - MIR SINE MIR -3 259 119 1549 252 91 18 chr6 125430113 125430989 -56984253 - L2 LINE L2 0 3313 2385 1839 204 142 34 chr6 125431719 125432249 -56982993 - MER77 LTR ERV1 -10 595 9 289 343 105 6 chr6 125432973 125433145 -56982097 + MIR SINE MIR 9 197 -65 229 347 20 0 chr6 125433191 125433289 -56981953 - L2 LINE L2 -1230 2084 1985 238 65 0 0 chr6 125433408 125433439 -56981803 - MLT2B2 LTR ERVL -8 507 477 1194 208 207 14 chr6 125433481 125433877 -56981365 - MLT2B2 LTR ERVL -34 520 1 29 47 0 0 chr6 125434040 125434083 -56981159 + AT_rich Low_complexity Low_complexity 1 43 0 728 245 164 0 chr6 125434523 125434731 -56980511 - MIR SINE MIR -8 254 13 313 247 196 64 chr6 125434748 125434954 -56980288 - MIR SINE MIR 0 262 29 1754 154 44 3 chr6 125435456 125435754 -56979488 - AluJb SINE Alu -2 310 1 24 0 0 0 chr6 125435957 125435981 -56979261 + AT_rich Low_complexity Low_complexity 1 24 0 2507 63 3 0 chr6 125436871 125437171 -56978071 + AluY SINE Alu 1 301 -10 261 386 9 0 chr6 125438712 125438826 -56976416 + MIR SINE MIR 37 151 -57 305 342 203 5 chr6 125438905 125439107 -56976135 - MIR SINE MIR -15 247 6 1701 130 0 46 chr6 125439825 125440086 -56975156 - AluJo SINE Alu -15 297 49 2367 65 0 0 chr6 125440530 125440824 -56974418 + AluY SINE Alu 1 294 -17 229 180 0 20 chr6 125440903 125440953 -56974289 + MER113 DNA MER1_type? 8 56 -465 28 29 0 0 chr6 125440960 125440995 -56974247 + AT_rich Low_complexity Low_complexity 1 35 0 2169 111 10 0 chr6 125442586 125442893 -56972349 - AluSx SINE Alu -2 310 1 23 33 0 0 chr6 125445657 125445687 -56969555 + AT_rich Low_complexity Low_complexity 1 30 0 432 213 21 11 chr6 125447424 125447518 -56967724 - L2 LINE L2 0 3272 3178 778 267 24 67 chr6 125447678 125447933 -56967309 + MIR SINE MIR 7 250 -12 71 0 0 0 chr6 125448775 125448846 -56966396 + AT_rich Low_complexity Low_complexity 1 71 0 198 0 0 0 chr6 125449040 125449062 -56966180 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 615 245 70 25 chr6 125449883 125450083 -56965159 + MIR SINE MIR 54 262 0 29 0 0 0 chr6 125450462 125450491 -56964751 + AT_rich Low_complexity Low_complexity 1 29 0 210 321 12 12 chr6 125450861 125450945 -56964297 + CT-rich Low_complexity Low_complexity 2 85 0 438 273 31 28 chr6 125452484 125452623 -56962619 + MER5A DNA MER1_type 33 180 -9 204 220 0 20 chr6 125453708 125453758 -56961484 + L2 LINE L2 3168 3216 -97 219 69 0 0 chr6 125453828 125453857 -56961385 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 697 187 86 37 chr6 125454333 125454520 -56960722 + MIR SINE MIR 6 201 -61 2474 64 0 10 chr6 125454654 125454965 -56960277 - AluY SINE Alu -3 308 1 408 321 108 65 chr6 125454973 125455509 -56959733 - L2 LINE L2 -20 3252 2705 231 267 46 38 chr6 125455557 125455688 -56959554 - L1ME3A LINE L1 -51 6119 5988 2527 70 0 3 chr6 125455838 125456150 -56959092 + AluY SINE Alu 1 311 0 251 54 27 0 chr6 125456537 125456574 -56958668 + (TG)n Simple_repeat Simple_repeat 2 39 0 232 150 250 0 chr6 125457964 125458024 -56957218 + MER112 DNA MER1_type 1 75 -185 194 157 0 20 chr6 125458026 125458077 -56957165 + T-rich Low_complexity Low_complexity 5 54 0 2635 126 50 24 chr6 125458087 125458549 -56956693 - L1PA16 LINE L1 -3 6163 5690 22 0 0 0 chr6 125458576 125458598 -56956644 + AT_rich Low_complexity Low_complexity 1 22 0 1179 179 21 13 chr6 125459474 125459708 -56955534 - MLT1C LTR MaLR 0 467 232 2375 68 3 0 chr6 125459806 125460098 -56955144 - AluSp SINE Alu -20 293 1 1894 260 96 29 chr6 125460098 125461126 -56954116 - HAL1 LINE L1 -357 2150 1054 241 281 25 16 chr6 125461131 125461252 -56953990 - HAL1 LINE L1 -1550 957 836 1555 202 112 22 chr6 125461267 125461713 -56953529 - MLT1D LTR MaLR -19 486 1 423 0 0 0 chr6 125461736 125461783 -56953459 + (TG)n Simple_repeat Simple_repeat 2 48 0 32 26 0 0 chr6 125461945 125461984 -56953258 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr6 125462917 125462949 -56952293 + AT_rich Low_complexity Low_complexity 1 32 0 2355 180 76 14 chr6 125463244 125463755 -56951487 - MER67A LTR ERV1 0 543 1 351 247 185 39 chr6 125464187 125464365 -56950877 + MIR SINE MIR 48 251 -11 630 214 29 23 chr6 125465632 125465805 -56949437 + MLT1A2 LTR MaLR 1 174 -200 862 172 27 27 chr6 125465865 125466051 -56949191 + MLT1A2 LTR MaLR 189 374 0 5123 188 82 37 chr6 125466603 125466820 -56948422 - Charlie1a DNA MER1_type -1309 1452 1246 258 32 0 0 chr6 125466820 125466851 -56948391 + (TA)n Simple_repeat Simple_repeat 2 32 0 1671 159 68 20 chr6 125466851 125467147 -56948095 - AluJo SINE Alu -2 310 1 5123 188 82 37 chr6 125467147 125468317 -56946925 - Charlie1a DNA MER1_type -1514 1247 1 625 252 126 28 chr6 125469943 125470197 -56945045 - L2 LINE L2 -1 3312 3034 1268 255 52 9 chr6 125470281 125470724 -56944518 + Charlie4a DNA MER1_type 39 500 -8 2174 40 0 0 chr6 125470977 125471274 -56943968 - AluY SINE Alu 0 331 35 198 272 210 0 chr6 125473025 125473106 -56942136 - MIR SINE MIR -6 256 159 2301 110 0 0 chr6 125473293 125473601 -56941641 + AluSx SINE Alu 1 308 -4 24 0 0 0 chr6 125473773 125473797 -56941445 + AT_rich Low_complexity Low_complexity 1 24 0 2637 26 0 13 chr6 125475053 125475361 -56939881 + AluY SINE Alu 1 304 -7 1658 86 0 0 chr6 125475933 125476142 -56939100 - AluY SINE Alu -17 294 86 459 279 74 0 chr6 125477729 125477851 -56937391 - L2 LINE L2 -5 3267 3137 205 297 9 108 chr6 125478553 125478664 -56936578 - MER5B DNA MER1_type -78 100 1 286 54 0 0 chr6 125479175 125479212 -56936030 - L1PA16 LINE L1 -105 6061 6025 21 0 0 0 chr6 125483071 125483092 -56932150 + AT_rich Low_complexity Low_complexity 1 21 0 641 178 0 0 chr6 125485221 125485328 -56929914 + FRAM SINE Alu 40 146 -30 776 204 12 19 chr6 125485689 125485851 -56929391 - FRAM SINE Alu -18 158 1 571 242 0 0 chr6 125486026 125486150 -56929092 + MER94 DNA DNA 10 133 -1 206 279 16 0 chr6 125486231 125486292 -56928950 - MIR3 SINE MIR -32 176 115 268 261 35 99 chr6 125486723 125486865 -56928377 - HAL1 LINE L1 -14 2493 2361 256 318 143 0 chr6 125487042 125487168 -56928074 - HAL1 LINE L1 -2363 144 1 1107 277 146 8 chr6 125487207 125487696 -56927546 - L2 LINE L2 -11 3302 2748 519 220 131 18 chr6 125487696 125487864 -56927378 - L2 LINE L2 -894 2420 2234 302 345 74 30 chr6 125487907 125488110 -56927132 - L2 LINE L2 -338 2976 2765 245 357 196 0 chr6 125488398 125488541 -56926701 - L2 LINE L2 -556 2758 2588 186 339 9 55 chr6 125488792 125488901 -56926341 - L2 LINE L2 -356 2916 2813 333 264 66 19 chr6 125489706 125489812 -56925430 + L2 LINE L2 3148 3258 -14 211 224 0 17 chr6 125489830 125489888 -56925354 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 2193 161 6 8 chr6 125489929 125490295 -56924947 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr6 125490906 125490929 -56924313 + AT_rich Low_complexity Low_complexity 1 23 0 273 209 30 15 chr6 125491194 125491261 -56923981 - MIR SINE MIR -117 145 78 1823 156 10 3 chr6 125491500 125491801 -56923441 + AluJb SINE Alu 1 303 -9 413 227 0 0 chr6 125492504 125492579 -56922663 - MIR3 SINE MIR -10 198 124 26 0 0 0 chr6 125492811 125492837 -56922405 + AT_rich Low_complexity Low_complexity 1 26 0 309 309 64 35 chr6 125493350 125493699 -56921543 - L2 LINE L2 -201 3071 2702 305 278 80 6 chr6 125493952 125494128 -56921114 - L1ME3A LINE L1 -223 5947 5759 4683 123 23 38 chr6 125494303 125495121 -56920121 - L1MC1 LINE L1 0 6333 5528 340 356 162 0 chr6 125495272 125495519 -56919723 - L2 LINE L2 -832 2482 2196 851 212 55 25 chr6 125495525 125495737 -56919505 - MIR SINE MIR 0 262 48 205 324 69 0 chr6 125495772 125495874 -56919368 - L2 LINE L2 -1192 2122 2014 34 55 0 0 chr6 125496035 125496090 -56919152 + AT_rich Low_complexity Low_complexity 1 55 0 434 275 85 47 chr6 125496635 125496893 -56918349 - L2 LINE L2 0 3313 3046 35 0 0 0 chr6 125498353 125498388 -56916854 + AT_rich Low_complexity Low_complexity 1 35 0 256 236 8 8 chr6 125499437 125499564 -56915678 + GA-rich Low_complexity Low_complexity 2 128 0 244 145 48 32 chr6 125500369 125500431 -56914811 + T-rich Low_complexity Low_complexity 3 65 0 255 146 0 0 chr6 125500860 125500915 -56914327 + (TC)n Simple_repeat Simple_repeat 1 55 0 1913 175 34 3 chr6 125500945 125501299 -56913943 + MLT1A1 LTR MaLR 1 365 0 2103 127 116 0 chr6 125501482 125501843 -56913399 + MER57A LTR ERV1 1 403 0 258 307 51 73 chr6 125504761 125504898 -56910344 + L2 LINE L2 3180 3313 0 214 351 153 10 chr6 125505171 125505373 -56909869 - L2 LINE L2 -2816 498 268 303 304 39 10 chr6 125506159 125506261 -56908981 - MIR SINE MIR -50 212 108 190 266 38 38 chr6 125508091 125508170 -56907072 - MIR SINE MIR -23 239 161 260 224 0 0 chr6 125509723 125509781 -56905461 - L1MC5 LINE L1 -64 7897 7840 374 300 62 25 chr6 125510246 125510406 -56904836 - L2 LINE L2 -650 2664 2499 1955 152 7 0 chr6 125510854 125511144 -56904098 - AluJb SINE Alu -20 292 1 188 329 55 0 chr6 125511859 125511932 -56903310 - MIR SINE MIR -123 139 63 1683 173 3 24 chr6 125512937 125513232 -56902010 + AluJo SINE Alu 6 294 -18 232 311 30 22 chr6 125513398 125513533 -56901709 - L1ME3A LINE L1 -29 6141 6006 1339 281 76 8 chr6 125513628 125514271 -56900971 - L1ME3A LINE L1 -219 5951 5265 513 222 125 90 chr6 125514271 125514732 -56900510 - L2 LINE L2 -2 3311 2747 2224 92 77 2 chr6 125514750 125515233 -56900009 - MER1A DNA MER1_type 0 529 1 1746 160 49 6 chr6 125515724 125516049 -56899193 + MER2 DNA MER2_type 7 345 0 517 267 100 11 chr6 125516094 125516274 -56898968 + MIR SINE MIR 18 213 -49 1733 231 42 13 chr6 125516675 125517126 -56898116 - LTR40c LTR ERVL 0 465 2 28 48 0 0 chr6 125517656 125517698 -56897544 + AT_rich Low_complexity Low_complexity 1 42 0 2325 104 0 0 chr6 125518414 125518722 -56896520 + AluSg SINE Alu 1 308 -2 3199 256 87 49 chr6 125518901 125519003 -56896239 + HAL1 LINE L1 67 164 -2343 1544 187 16 13 chr6 125519003 125519313 -56895929 + AluJb SINE Alu 1 311 -1 3199 256 87 49 chr6 125519313 125520619 -56894623 + HAL1 LINE L1 164 1528 -979 566 279 12 0 chr6 125520632 125520797 -56894445 + HAL1 LINE L1 1655 1821 -686 23 0 0 0 chr6 125520868 125520891 -56894351 + AT_rich Low_complexity Low_complexity 1 23 0 560 218 54 0 chr6 125520946 125521093 -56894149 + MLT1F1 LTR MaLR 1 155 -412 323 189 60 103 chr6 125521128 125521210 -56894032 + HAL1 LINE L1 2212 2296 -211 2364 81 0 0 chr6 125521210 125521506 -56893736 + AluSg SINE Alu 1 296 -14 323 189 60 103 chr6 125521506 125521608 -56893634 + HAL1 LINE L1 2296 2388 -119 292 291 70 38 chr6 125522416 125522655 -56892587 - L2 LINE L2 -222 3050 2784 692 219 74 19 chr6 125522855 125523111 -56892131 - L1MC5 LINE L1 -47 7914 7645 2089 59 0 35 chr6 125523147 125523372 -56891870 - L1PB1 LINE L1 0 6151 5937 2376 94 0 0 chr6 125523372 125523671 -56891571 - AluSq SINE Alu -14 299 1 2089 59 0 35 chr6 125523671 125523731 -56891511 - L1PB1 LINE L1 -214 5937 5876 4527 165 33 2 chr6 125523899 125524955 -56890287 - L1MB3 LINE L1 -3 6180 5097 2405 59 0 23 chr6 125524962 125525267 -56889975 - AluY SINE Alu -13 298 1 1432 88 23 5 chr6 125525391 125525608 -56889634 - L1MA5A LINE L1 -5 6292 6072 465 215 29 91 chr6 125525861 125525977 -56889265 - L1MC4a LINE L1 -1873 5935 5840 1605 194 17 7 chr6 125525977 125526270 -56888972 - AluJb SINE Alu -16 296 1 465 215 29 91 chr6 125526270 125526395 -56888847 - L1MC4a LINE L1 -1968 5840 5709 320 194 137 40 chr6 125526425 125526549 -56888693 - L1MC5 LINE L1 -172 7789 7654 322 333 111 7 chr6 125527287 125527422 -56887820 - L2 LINE L2 -26 3246 3098 285 328 104 49 chr6 125527480 125528043 -56887199 - L2 LINE L2 -429 2885 2290 183 354 0 0 chr6 125528522 125528587 -56886655 - MIR SINE MIR -96 112 48 231 266 46 28 chr6 125528681 125528790 -56886452 - L2 LINE L2 -1583 1731 1621 23 33 0 0 chr6 125528921 125528951 -56886291 + AT_rich Low_complexity Low_complexity 1 30 0 513 346 160 19 chr6 125530501 125531076 -56884166 + L2 LINE L2 1753 2408 -906 301 261 27 18 chr6 125531899 125532010 -56883232 - MLT1K LTR MaLR -3 585 474 276 53 0 0 chr6 125532127 125532165 -56883077 + (GA)n Simple_repeat Simple_repeat 1 38 0 10801 95 6 2 chr6 125532558 125534866 -56880376 - L1PA8 LINE L1 -7 6165 3820 11514 98 3 64 chr6 125534867 125536914 -56878328 + L1PA8 LINE L1 1900 3822 -2324 185 59 59 0 chr6 125538025 125538059 -56877183 + A-rich Low_complexity Low_complexity 5 40 0 767 202 82 0 chr6 125538380 125538579 -56876663 + Charlie5 DNA MER1_type 1 200 -2412 428 185 46 0 chr6 125538577 125538685 -56876557 + Charlie5 DNA MER1_type 2352 2464 -148 * 727 174 7 22 chr6 125538685 125538823 -56876419 + AluJo SINE Alu 1 136 -176 442 122 68 27 chr6 125538842 125538989 -56876253 + Charlie5 DNA MER1_type 2449 2601 -11 306 50 0 0 chr6 125539733 125539773 -56875469 + (GA)n Simple_repeat Simple_repeat 1 40 0 6385 97 16 38 chr6 125539930 125540177 -56875065 - L1MA3 LINE L1 0 6305 6054 1456 204 35 7 chr6 125540177 125540320 -56874922 - AluJo SINE Alu -20 292 155 219 69 0 0 chr6 125540320 125540349 -56874893 + (TA)n Simple_repeat Simple_repeat 1 29 0 1456 204 35 7 chr6 125540349 125540489 -56874753 - AluJo SINE Alu -157 155 1 6385 97 16 38 chr6 125540489 125541370 -56873872 - L1MA3 LINE L1 -251 6054 5203 30 45 0 0 chr6 125541713 125541757 -56873485 + AT_rich Low_complexity Low_complexity 1 44 0 489 357 118 47 chr6 125544013 125545337 -56869905 + L2 LINE L2 1852 3272 0 342 191 36 12 chr6 125545353 125545437 -56869805 + MLT1F1 LTR MaLR 9 94 -448 1373 171 89 46 chr6 125545447 125545774 -56869468 + MLT1F1 LTR MaLR 227 567 0 239 384 12 0 chr6 125546135 125546221 -56869021 + MIR SINE MIR 2 88 -174 34787 94 11 11 chr6 125546258 125552428 -56862814 + L1PA6 LINE L1 11 6171 0 1029 223 21 21 chr6 125552759 125552992 -56862250 + Tigger7 DNA MER2_type 32 264 -469 385 143 9 152 chr6 125552996 125553108 -56862134 + Tigger7 DNA MER2_type 2490 2585 -2 295 350 17 8 chr6 125553215 125553332 -56861910 - MIR3 SINE MIR -7 201 84 24 0 0 0 chr6 125553455 125553479 -56861763 + AT_rich Low_complexity Low_complexity 1 24 0 239 253 44 77 chr6 125553558 125553649 -56861593 - L2 LINE L2 -1 3271 3184 210 288 7 131 chr6 125553841 125553994 -56861248 - L2 LINE L2 -593 2721 2588 5956 155 23 21 chr6 125554116 125555657 -56859585 + L1PB3 LINE L1 4039 5575 -579 1803 170 3 19 chr6 125555657 125555969 -56859273 - AluJb SINE Alu 0 312 6 5956 155 23 21 chr6 125555969 125556482 -56858760 + L1PB3 LINE L1 5575 6101 -53 300 91 0 0 chr6 125556482 125556526 -56858716 + (TA)n Simple_repeat Simple_repeat 2 45 0 5956 155 23 21 chr6 125556526 125556575 -56858667 + L1PB3 LINE L1 6101 6148 -6 24 53 0 0 chr6 125556575 125556613 -56858629 + AT_rich Low_complexity Low_complexity 1 38 0 490 312 77 14 chr6 125559206 125559427 -56855815 + MIR SINE MIR 1 235 -27 262 297 246 14 chr6 125559903 125560041 -56855201 - MIR SINE MIR -63 199 30 870 168 150 22 chr6 125561965 125562047 -56853195 + ORSL DNA AcHobo 1 71 -204 471 107 0 0 chr6 125562047 125562122 -56853120 + (TA)n Simple_repeat Simple_repeat 1 75 0 870 168 150 22 chr6 125562122 125562265 -56852977 + ORSL DNA AcHobo 71 255 -20 1761 187 19 16 chr6 125562272 125562636 -56852606 - MLT1A1 LTR MaLR 0 365 1 183 156 0 0 chr6 125562768 125562800 -56852442 + (TATATG)n Simple_repeat Simple_repeat 3 34 0 2722 232 72 19 chr6 125563008 125563776 -56851466 + MER21B LTR ERV1 12 819 -44 338 265 191 12 chr6 125564535 125564697 -56850545 - LTR16A1 LTR ERVL 0 457 267 757 235 11 17 chr6 125565916 125566095 -56849147 - MER5B DNA MER1_type 0 178 1 229 271 24 12 chr6 125566171 125566256 -56848986 + MER63 DNA MER1_type 1 712 -124 313 95 0 95 chr6 125566396 125566459 -56848783 - MLT2B3 LTR ERVL 0 520 464 195 129 0 0 chr6 125566467 125566498 -56848744 + (TG)n Simple_repeat Simple_repeat 2 32 0 2197 174 43 73 chr6 125566604 125567148 -56848094 - MLT2B3 LTR ERVL -40 508 1 267 281 188 46 chr6 125567148 125567387 -56847855 + MLT1H LTR MaLR 1 276 -289 249 83 0 0 chr6 125567398 125567434 -56847808 + (GA)n Simple_repeat Simple_repeat 1 36 0 335 228 63 9 chr6 125567602 125567775 -56847467 + MLT1H LTR MaLR 357 555 0 386 295 179 6 chr6 125568151 125568307 -56846935 + MER5A DNA MER1_type 2 184 -5 1190 180 0 0 chr6 125568314 125568503 -56846739 - MER5A DNA MER1_type 0 189 1 223 250 0 0 chr6 125568542 125568590 -56846652 + MER5A DNA MER1_type 57 104 -85 409 310 81 19 chr6 125568617 125568875 -56846367 - L1M4 LINE L1 -1609 4537 4264 840 269 88 36 chr6 125569070 125569684 -56845558 + L1MC5 LINE L1 7262 7907 -54 418 294 84 42 chr6 125569752 125570157 -56845085 - HAL1b LINE L1 -703 645 224 190 345 71 12 chr6 125570315 125570399 -56844843 - MIR SINE MIR -71 191 103 263 252 83 13 chr6 125570476 125570593 -56844649 + MIR3 SINE MIR 66 194 -14 21 0 0 0 chr6 125570801 125570822 -56844420 + AT_rich Low_complexity Low_complexity 1 21 0 559 293 17 23 chr6 125571811 125571985 -56843257 - MER5B DNA MER1_type -5 173 1 2147 159 112 32 chr6 125572253 125572622 -56842620 + MER34 LTR ERV1 1 422 -120 2500 46 7 0 chr6 125572622 125572926 -56842316 + AluY SINE Alu 1 306 -5 2147 159 112 32 chr6 125572926 125573058 -56842184 + MER34 LTR ERV1 422 542 0 1132 75 0 12 chr6 125573198 125573358 -56841884 + L1PA8 LINE L1 6009 6166 -6 378 0 0 0 chr6 125576289 125576331 -56838911 + (TA)n Simple_repeat Simple_repeat 2 43 0 193 85 0 43 chr6 125577235 125577282 -56837960 + (TTTAA)n Simple_repeat Simple_repeat 3 47 0 801 118 0 15 chr6 125577653 125577788 -56837454 - FLAM_C SINE Alu 0 133 1 341 286 163 11 chr6 125578998 125579176 -56836066 + LTR41 LTR ERVL 1 205 -568 446 264 101 69 chr6 125579331 125579607 -56835635 + LTR41 LTR ERVL 479 763 -10 227 330 32 21 chr6 125580614 125580708 -56834534 - MIR SINE MIR -63 145 50 209 297 119 10 chr6 125581876 125581977 -56833265 + MIR SINE MIR 24 135 -73 236 345 37 21 chr6 125582454 125582645 -56832597 + L3b LINE CR1 1138 1331 -252 243 220 40 0 chr6 125583162 125583212 -56832030 + polypyrimidine Low_complexity Low_complexity 1 52 0 1439 153 8 35 chr6 125584113 125584374 -56830868 - AluJb SINE Alu -7 305 52 272 234 0 78 chr6 125584878 125584955 -56830287 + MIR SINE MIR 110 180 -82 30 27 0 0 chr6 125587704 125587741 -56827501 + AT_rich Low_complexity Low_complexity 1 37 0 279 0 0 0 chr6 125589538 125589569 -56825673 + (GA)n Simple_repeat Simple_repeat 2 32 0 369 145 0 0 chr6 125590478 125590540 -56824702 + (TA)n Simple_repeat Simple_repeat 1 62 0 580 282 61 16 chr6 125591907 125592151 -56823091 + MIR SINE MIR 6 262 0 262 278 68 30 chr6 125592350 125592483 -56822759 - MIR SINE MIR -70 192 55 1363 202 79 35 chr6 125593430 125593772 -56821470 + MLT1A1 LTR MaLR 7 363 -2 1830 144 59 0 chr6 125594025 125594330 -56820912 - MER47A DNA MER2_type 0 366 44 23 0 0 0 chr6 125594358 125594381 -56820861 + AT_rich Low_complexity Low_complexity 1 23 0 2113 108 3 7 chr6 125594389 125594676 -56820566 + AluSx SINE Alu 1 286 -26 835 155 17 22 chr6 125594784 125594965 -56820277 - L1MA4A LINE L1 -25 6278 6099 2164 115 0 0 chr6 125595080 125595366 -56819876 + AluSq SINE Alu 1 286 -27 414 0 0 0 chr6 125595367 125595413 -56819829 + (TA)n Simple_repeat Simple_repeat 1 46 0 207 0 0 0 chr6 125595412 125595435 -56819807 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 22 35 0 0 chr6 125595438 125595467 -56819775 + AT_rich Low_complexity Low_complexity 1 29 0 645 244 87 83 chr6 125595718 125595948 -56819294 + MIR SINE MIR 11 241 -21 289 247 27 0 chr6 125596201 125596274 -56818968 + MER74B LTR ERVL 1 75 -547 952 272 33 4 chr6 125596289 125596565 -56818677 + MER74B LTR ERVL 214 497 -125 1953 218 19 79 chr6 125596683 125596881 -56818361 - L1MC3 LINE L1 -179 5985 5777 296 73 0 0 chr6 125596881 125596922 -56818320 + MADE1 DNA Mariner 1 41 -39 1953 218 19 79 chr6 125596922 125597316 -56817926 - L1MC3 LINE L1 -387 5777 5434 249 250 132 21 chr6 125597419 125597563 -56817679 - HAL1 LINE L1 -753 1754 1595 295 309 102 23 chr6 125597568 125597925 -56817317 - L1M4c LINE L1 -971 1772 1262 2514 55 0 0 chr6 125598179 125598486 -56816756 + AluY SINE Alu 1 307 -4 370 296 209 10 chr6 125599894 125600100 -56815142 + MIR SINE MIR 15 261 -1 336 284 155 7 chr6 125600889 125601044 -56814198 - MIR SINE MIR -11 251 74 215 337 37 123 chr6 125601472 125601822 -56813420 + L2 LINE L2 2941 3260 -12 1891 168 14 0 chr6 125602326 125602623 -56812619 - AluSx SINE Alu -11 301 1 471 284 179 5 chr6 125603811 125604012 -56811230 + MIR SINE MIR 21 256 -6 357 255 31 71 chr6 125604966 125605096 -56810146 + MIR SINE MIR 33 165 -56 181 313 31 0 chr6 125605440 125605504 -56809738 + MIR SINE MIR 42 107 -101 247 299 93 19 chr6 125607177 125607284 -56807958 - MIR SINE MIR -125 137 23 2165 161 14 125 chr6 125607927 125608494 -56806748 + MLT1D LTR MaLR 2 505 0 23 54 0 0 chr6 125608644 125608681 -56806561 + AT_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr6 125610076 125610097 -56805145 + (T)n Simple_repeat Simple_repeat 1 21 0 2463 178 5 92 chr6 125610260 125610861 -56804381 - MER52A LTR ERV1 0 1755 1207 281 264 0 110 chr6 125610868 125611072 -56804170 - MER52A LTR ERV1 -356 1349 553 1116 213 3 78 chr6 125611112 125611586 -56803656 - MER52A LTR ERV1 -523 1232 660 200 273 0 0 chr6 125611972 125612016 -56803226 + GA-rich Low_complexity Low_complexity 5 48 0 1643 143 87 36 chr6 125612266 125612623 -56802619 - THE1C LTR MaLR 0 375 1 461 347 40 12 chr6 125612717 125612890 -56802352 - MIR3 SINE MIR -8 200 23 1222 267 88 26 chr6 125612924 125613343 -56801899 - L2 LINE L2 0 3313 2869 1116 139 93 19 chr6 125613349 125613564 -56801678 + MSTC LTR MaLR 198 428 0 453 217 133 36 chr6 125613579 125613745 -56801497 - L2 LINE L2 -473 2841 2660 2276 124 21 13 chr6 125614326 125614698 -56800544 - THE1C LTR MaLR 0 375 1 267 243 146 39 chr6 125615271 125615374 -56799868 + L2 LINE L2 2364 2477 -837 326 340 14 20 chr6 125617618 125617765 -56797477 - MIR3 SINE MIR -5 203 58 496 141 10 10 chr6 125620030 125620129 -56795113 + CT-rich Low_complexity Low_complexity 3 101 0 299 83 0 21 chr6 125620121 125620169 -56795073 + (TCCCC)n Simple_repeat Simple_repeat 1 47 0 * 1624 188 7 3 chr6 125620169 125620456 -56794786 - AluJo SINE Alu -24 288 1 1944 141 7 3 chr6 125620482 125620772 -56794470 - AluSx SINE Alu -21 291 1 956 244 139 38 chr6 125621009 125621456 -56793786 - MLT1J LTR MaLR -9 502 11 276 241 23 58 chr6 125621526 125621613 -56793629 + MIR SINE MIR 85 168 -94 206 380 20 0 chr6 125621671 125621771 -56793471 + L2 LINE L2 704 805 -2509 268 341 65 52 chr6 125622041 125622323 -56792919 - L2 LINE L2 -205 3067 2794 357 296 75 16 chr6 125622763 125622949 -56792293 + L2 LINE L2 2151 2347 -967 282 333 65 22 chr6 125623013 125623151 -56792091 + L2 LINE L2 2528 2671 -643 502 256 58 0 chr6 125623502 125623585 -56791657 + MIR SINE MIR 71 148 -114 408 216 90 30 chr6 125623585 125623752 -56791490 + MER104 DNA MER2_type 4 180 0 502 256 58 0 chr6 125623752 125623840 -56791402 + MIR SINE MIR 148 252 -10 2263 102 0 0 chr6 125624267 125624562 -56790680 - AluSx SINE Alu -17 295 1 22 35 0 0 chr6 125626232 125626261 -56788981 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 125626789 125626810 -56788432 + AT_rich Low_complexity Low_complexity 1 21 0 275 323 36 24 chr6 125627114 125627281 -56787961 + L1ME4a LINE L1 5533 5701 -420 306 254 107 25 chr6 125627518 125627640 -56787602 + L1ME4a LINE L1 5982 6113 -8 657 207 49 0 chr6 125627849 125628013 -56787229 - L1MA7 LINE L1 -121 6170 5999 949 204 141 40 chr6 125628013 125628340 -56786902 - L1 LINE L1 -2824 3322 2945 1604 176 6 40 chr6 125628340 125628663 -56786579 - AluJo SINE Alu 0 312 1 949 204 141 40 chr6 125628663 125628738 -56786504 - L1 LINE L1 -3201 2945 2879 1762 115 58 26 chr6 125628742 125628915 -56786327 + L1MA9 LINE L1 5986 6175 -137 195 42 0 0 chr6 125628915 125628939 -56786303 + (CA)n Simple_repeat Simple_repeat 1 24 0 1762 115 58 26 chr6 125628939 125629077 -56786165 + L1MA9 LINE L1 6175 6307 -5 1072 139 12 6 chr6 125631173 125631345 -56783897 - FRAM SINE Alu -4 172 1 273 304 71 43 chr6 125631590 125631916 -56783326 - L1ME4a LINE L1 -13 6108 5774 295 128 64 0 chr6 125632066 125632113 -56783129 + L2 LINE L2 3222 3271 -1 481 288 46 0 chr6 125632149 125632302 -56782940 - L1ME4a LINE L1 -477 5644 5485 258 384 111 42 chr6 125632508 125632797 -56782445 - L2 LINE L2 -50 3222 2914 252 122 0 0 chr6 125633051 125633092 -56782150 + (TG)n Simple_repeat Simple_repeat 2 42 0 237 350 38 0 chr6 125633145 125633225 -56782017 - L2 LINE L2 -672 2642 2560 207 287 160 13 chr6 125633337 125633487 -56781755 - L2 LINE L2 -927 2387 2216 25 31 0 0 chr6 125634070 125634102 -56781140 + AT_rich Low_complexity Low_complexity 1 32 0 203 152 22 0 chr6 125634318 125634364 -56780878 + GA-rich Low_complexity Low_complexity 3 49 0 1474 79 84 9 chr6 125634640 125634854 -56780388 + MER30 DNA MER1_type 1 230 0 2864 70 0 0 chr6 125635004 125635359 -56779883 - THE1A LTR MaLR 0 355 1 866 134 0 15 chr6 125636365 125636499 -56778743 + FLAM_C SINE Alu 1 132 -1 221 279 15 0 chr6 125637002 125637070 -56778172 - L2 LINE L2 -46 3267 3199 242 358 30 61 chr6 125637355 125637520 -56777722 + L2 LINE L2 2596 2755 -559 1708 161 99 65 chr6 125638989 125639051 -56776191 - MSTB1 LTR MaLR -2 430 372 2554 54 0 0 chr6 125639051 125639345 -56775897 + AluY SINE Alu 2 295 -16 1708 161 99 65 chr6 125639345 125639698 -56775544 - MSTB1 LTR MaLR -60 372 1 28 29 0 0 chr6 125639707 125639742 -56775500 + AT_rich Low_complexity Low_complexity 1 35 0 296 348 19 51 chr6 125639752 125639910 -56775332 - MER5B DNA MER1_type -25 153 1 333 206 151 0 chr6 125641011 125641084 -56774158 + L2 LINE L2 3230 3313 0 267 275 101 0 chr6 125642762 125642871 -56772371 + L2 LINE L2 1705 1824 -1490 225 121 69 0 chr6 125643245 125643303 -56771939 + (TA)n Simple_repeat Simple_repeat 1 62 0 23 33 0 0 chr6 125643522 125643552 -56771690 + AT_rich Low_complexity Low_complexity 1 30 0 319 317 58 0 chr6 125643937 125644057 -56771185 + L2 LINE L2 3187 3313 0 1836 147 0 63 chr6 125644099 125644418 -56770824 - AluJb SINE Alu -13 299 1 201 171 0 0 chr6 125645583 125645618 -56769624 + A-rich Low_complexity Low_complexity 1 35 0 381 22 0 0 chr6 125645992 125646038 -56769204 + (TG)n Simple_repeat Simple_repeat 1 46 0 1097 148 88 18 chr6 125646208 125646425 -56768817 - MER96B DNA MER1_type? -177 240 9 321 256 12 0 chr6 125647407 125647489 -56767753 + MIR SINE MIR 78 160 -102 30 0 0 0 chr6 125647661 125647691 -56767551 + AT_rich Low_complexity Low_complexity 1 30 0 569 268 39 13 chr6 125647794 125647947 -56767295 + LTR16A LTR ERVL 225 381 -69 2052 148 30 33 chr6 125648223 125648588 -56766654 - THE1B LTR MaLR 0 364 1 1198 261 97 16 chr6 125648588 125649311 -56765931 + L1M4 LINE L1 3703 4512 -1634 1952 115 118 18 chr6 125649325 125649656 -56765586 - THE1B LTR MaLR 0 364 1 2612 96 0 0 chr6 125649656 125650001 -56765241 - THE1B-int LTR MaLR 0 1580 1236 * 5311 85 34 1 chr6 125649997 125650760 -56764482 + L1PB1 LINE L1 5360 6147 -4 3743 163 6 2 chr6 125650904 125651536 -56763706 - MER41B LTR ERV1 0 635 1 4945 246 34 29 chr6 125651878 125653343 -56761899 + L1PA12 LINE L1 781 2237 -3966 2072 117 0 17 chr6 125653343 125653641 -56761601 + AluSg SINE Alu 1 293 -17 4945 246 34 29 chr6 125653641 125653778 -56761464 + L1PA12 LINE L1 2237 2372 -3831 2362 97 0 3 chr6 125653778 125654086 -56761156 - AluSg SINE Alu -3 307 1 4945 246 34 29 chr6 125654086 125654961 -56760281 + L1PA12 LINE L1 2372 3259 -2944 1979 157 0 0 chr6 125654961 125655273 -56759969 - AluJb SINE Alu 0 312 1 4945 246 34 29 chr6 125655273 125655438 -56759804 + L1PA12 LINE L1 3259 3422 -2781 511 257 104 92 chr6 125655439 125655609 -56759633 + L2 LINE L2 378 544 -2770 201 39 0 0 chr6 125655609 125655635 -56759607 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1524 193 7 27 chr6 125655639 125655935 -56759307 - AluJo SINE Alu -22 290 1 640 229 0 0 chr6 125655937 125656068 -56759174 - AluJo/FLAM SINE Alu -171 131 1 511 257 104 92 chr6 125656068 125656138 -56759104 + L2 LINE L2 546 629 -2685 968 283 51 29 chr6 125656138 125656512 -56758730 + L1MDa LINE L1 17 398 -6142 228 325 12 0 chr6 125656977 125657057 -56758185 + L1MDa LINE L1 908 988 -5555 1701 221 107 26 chr6 125657153 125657769 -56757473 + L1MDa LINE L1 1002 1667 -4873 623 254 36 18 chr6 125657794 125658018 -56757224 + L1MDa LINE L1 3167 3394 -3146 4804 133 42 0 chr6 125658018 125658775 -56756467 + L1PA8A LINE L1 5340 6128 -3 2098 138 0 3 chr6 125658819 125659130 -56756112 + AluSx SINE Alu 1 310 -2 1738 257 46 13 chr6 125659148 125659775 -56755467 + L1MDa LINE L1 3408 4055 -2485 2043 112 3 60 chr6 125660028 125660418 -56754824 - AluSx SINE Alu 0 371 1 268 171 0 0 chr6 125660479 125660520 -56754722 - Alu SINE Alu -259 41 1 291 178 0 44 chr6 125661421 125661511 -56753731 + CT-rich Low_complexity Low_complexity 3 88 0 234 294 0 29 chr6 125662968 125663036 -56752206 - L3 LINE CR1 -4 1573 1508 308 253 209 0 chr6 125663133 125663224 -56752018 - MER81 DNA DNA 0 114 5 373 313 47 16 chr6 125663379 125663511 -56751731 - MIR3 SINE MIR -1 207 74 389 360 99 17 chr6 125663528 125663822 -56751420 + L2 LINE L2 2915 3232 -40 287 140 0 20 chr6 125663839 125663889 -56751353 - MER21B LTR ERV1 -17 846 798 1086 131 6 0 chr6 125663904 125664064 -56751178 - AluSg/x SINE Alu -15 295 135 2971 202 104 56 chr6 125664065 125664891 -56750351 - MER21A LTR ERV1 -62 869 4 2315 95 0 3 chr6 125665109 125665405 -56749837 - AluY SINE Alu -16 295 1 25 90 0 0 chr6 125665616 125665683 -56749559 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr6 125665948 125665971 -56749271 + AT_rich Low_complexity Low_complexity 1 23 0 2155 120 10 0 chr6 125666242 125666542 -56748700 - AluSx SINE Alu -9 303 1 279 0 0 0 chr6 125668484 125668515 -56746727 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 1671 137 52 4 chr6 125668524 125668772 -56746470 - AluSx SINE Alu -52 260 1 195 129 0 0 chr6 125670158 125670189 -56745053 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 327 317 10 20 chr6 125670340 125670441 -56744801 + MIR SINE MIR 23 122 -140 366 302 9 9 chr6 125670579 125670685 -56744557 - L2 LINE L2 -188 3084 2979 348 382 119 21 chr6 125670862 125671534 -56743708 - L2 LINE L2 -570 2744 2007 2251 84 40 0 chr6 125671730 125672027 -56743215 - AluY SINE Alu -2 309 1 28 61 0 0 chr6 125672094 125672143 -56743099 + AT_rich Low_complexity Low_complexity 1 49 0 232 94 234 16 chr6 125672151 125672215 -56743027 + MER20B DNA MER1_type 523 600 -183 1946 130 27 3 chr6 125672590 125672882 -56742360 - AluSx SINE Alu -13 299 1 228 323 0 0 chr6 125673216 125673309 -56741933 + GA-rich Low_complexity Low_complexity 1 93 0 208 139 0 0 chr6 125674239 125674275 -56740967 + (TG)n Simple_repeat Simple_repeat 2 37 0 601 278 62 0 chr6 125674280 125674456 -56740786 - MIR SINE MIR -73 189 3 219 114 0 0 chr6 125674989 125675024 -56740218 + (GAA)n Simple_repeat Simple_repeat 1 35 0 237 159 0 0 chr6 125675701 125675745 -56739497 + (TG)n Simple_repeat Simple_repeat 2 45 0 2228 87 0 69 chr6 125676043 125676376 -56738866 - AluSg SINE Alu 0 310 1 1154 193 116 57 chr6 125676638 125677218 -56738024 - MER76 LTR ERV -19 669 3 363 189 33 67 chr6 125678032 125678122 -56737120 + Charlie1 DNA MER1_type 147 233 -2528 21 0 0 0 chr6 125678158 125678179 -56737063 + AT_rich Low_complexity Low_complexity 1 21 0 408 244 49 8 chr6 125678181 125678304 -56736938 + Charlie1 DNA MER1_type 2633 2760 -1 1605 91 23 0 chr6 125678486 125678706 -56736536 - AluSc SINE Alu -3 306 82 195 219 233 0 chr6 125679172 125679245 -56735997 - MER5C DNA MER1_type -234 90 1 301 333 183 21 chr6 125679371 125679611 -56735631 - L2 LINE L2 -433 2881 2603 2171 122 0 3 chr6 125679611 125679914 -56735328 + AluSx SINE Alu 8 309 -3 820 101 59 0 chr6 125679964 125680083 -56735159 + FRAM SINE Alu 41 166 -10 621 284 120 4 chr6 125680726 125680951 -56734291 + MIR SINE MIR 6 256 -6 215 233 0 0 chr6 125681704 125681747 -56733495 + (CAAAT)n Simple_repeat Simple_repeat 1 43 0 900 249 26 26 chr6 125682562 125682791 -56732451 + MIR SINE MIR 28 256 -6 31 26 0 0 chr6 125682796 125682834 -56732408 + AT_rich Low_complexity Low_complexity 1 38 0 2115 121 3 13 chr6 125683167 125683472 -56731770 + AluSx SINE Alu 1 302 -10 28 0 0 0 chr6 125684045 125684073 -56731169 + AT_rich Low_complexity Low_complexity 1 28 0 42500 37 1 1 chr6 125684083 125690250 -56724992 + L1PA3 LINE L1 1 6166 0 192 35 0 35 chr6 125690221 125690299 -56724943 + (TAA)n Simple_repeat Simple_repeat 3 79 0 241 148 19 0 chr6 125690449 125690503 -56724739 - L1MA10 LINE L1 -3 6331 6277 252 0 0 0 chr6 125690512 125690540 -56724702 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2378 103 0 6 chr6 125690685 125690997 -56724245 + AluJb SINE Alu 1 310 -2 639 282 161 37 chr6 125691786 125691976 -56723266 - L2 LINE L2 -6 3307 3142 1814 168 7 3 chr6 125691976 125692262 -56722980 - AluJo SINE Alu -25 287 1 639 282 161 37 chr6 125692262 125692419 -56722823 - L2 LINE L2 -171 3142 2917 1698 111 0 0 chr6 125692544 125692770 -56722472 + AluSg/x SINE Alu 82 307 -5 2051 138 0 40 chr6 125694066 125694391 -56720851 + AluSx SINE Alu 1 312 0 247 304 58 22 chr6 125694703 125694841 -56720401 + HAL1 LINE L1 26 168 -2339 394 284 58 70 chr6 125695022 125695349 -56719893 + HAL1 LINE L1 634 956 -1551 414 259 78 49 chr6 125695371 125695527 -56719715 + HAL1 LINE L1 1050 1215 -1292 2343 72 7 3 chr6 125695527 125695832 -56719410 + AluSq SINE Alu 1 306 -7 414 259 78 49 chr6 125695832 125695880 -56719362 + HAL1 LINE L1 1215 1260 -1247 500 290 196 0 chr6 125695897 125696111 -56719131 - MIR SINE MIR 0 262 7 284 220 99 78 chr6 125696141 125696282 -56718960 + HAL1 LINE L1 1328 1471 -1036 189 0 0 0 chr6 125696300 125696321 -56718921 + (CA)n Simple_repeat Simple_repeat 2 22 0 307 242 61 10 chr6 125696326 125696425 -56718817 + HAL1 LINE L1 1812 1915 -592 463 295 73 14 chr6 125699792 125700161 -56715081 + L1MC/D LINE L1 4959 5349 -797 301 259 148 31 chr6 125700195 125700505 -56714737 + L1MC/D LINE L1 5414 5787 -399 357 242 38 15 chr6 125700554 125700686 -56714556 + L1MC4a LINE L1 5712 5846 -1962 307 229 107 46 chr6 125701083 125701214 -56714028 + MIR SINE MIR 76 214 -48 1224 151 64 40 chr6 125701232 125701455 -56713787 + MER33 DNA MER1_type 11 244 -2341 2562 57 3 16 chr6 125701455 125701770 -56713472 - AluSp SINE Alu -2 311 1 1224 151 64 40 chr6 125701770 125701844 -56713398 + MER33 DNA MER1_type 244 315 -9 24 103 0 0 chr6 125701881 125701968 -56713274 + AT_rich Low_complexity Low_complexity 1 87 0 189 0 0 0 chr6 125702391 125702412 -56712830 + (CA)n Simple_repeat Simple_repeat 2 22 0 379 119 0 0 chr6 125703042 125703101 -56712141 - MER103 DNA DNA -64 102 44 2148 137 0 6 chr6 125703195 125703509 -56711733 + AluSq SINE Alu 1 312 -1 511 287 28 56 chr6 125703856 125704072 -56711170 + MIR SINE MIR 51 260 -2 26 30 0 0 chr6 125704360 125704393 -56710849 + AT_rich Low_complexity Low_complexity 1 33 0 336 320 116 0 chr6 125704499 125704520 -56710722 - MIR SINE MIR 0 262 245 2357 101 0 0 chr6 125704520 125704816 -56710426 - AluSq SINE Alu -17 296 1 336 320 116 0 chr6 125704816 125704941 -56710301 - MIR SINE MIR -17 245 99 1887 130 84 0 chr6 125706278 125706562 -56708680 - AluJb SINE Alu -4 308 1 301 242 59 72 chr6 125707329 125707482 -56707760 + L1MEd LINE L1 809 959 -5160 1113 330 128 23 chr6 125707930 125708793 -56706449 + L2 LINE L2 207 1159 -2155 412 296 33 72 chr6 125708960 125709045 -56706197 + L1M4 LINE L1 4194 4281 -1865 1814 170 0 20 chr6 125709045 125709351 -56705891 + AluJo SINE Alu 1 300 -12 412 296 33 72 chr6 125709351 125709537 -56705705 + L1M4 LINE L1 4281 4452 -1694 2091 130 7 0 chr6 125709537 125709829 -56705413 + AluSx SINE Alu 3 296 -16 412 296 33 72 chr6 125709829 125709890 -56705352 + L1M4 LINE L1 4452 4514 -1632 436 361 59 32 chr6 125709892 125710416 -56704826 + L1M4 LINE L1 4582 5119 -1027 960 208 111 35 chr6 125710647 125710950 -56704292 + L1M4 LINE L1 4938 5271 -875 1686 171 0 55 chr6 125710950 125711277 -56703965 - AluJb SINE Alu -3 309 1 960 208 111 35 chr6 125711277 125711314 -56703928 + L1M4 LINE L1 5271 5304 -842 * 1272 209 20 42 chr6 125711305 125711712 -56703530 + L1MEd LINE L1 2409 2806 -3323 26 62 0 38 chr6 125712760 125712840 -56702402 + AT_rich Low_complexity Low_complexity 1 77 0 303 287 160 22 chr6 125713017 125713198 -56702044 - MIR SINE MIR -41 221 16 260 303 147 28 chr6 125713210 125713319 -56701923 + MIR3 SINE MIR 4 125 -83 23 0 0 0 chr6 125713399 125713422 -56701820 + AT_rich Low_complexity Low_complexity 1 23 0 2073 21 4 0 chr6 125714246 125714480 -56700762 - AluY SINE Alu -8 303 69 219 69 0 0 chr6 125714784 125714813 -56700429 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2421 49 0 0 chr6 125714814 125715101 -56700141 - AluY SINE Alu -24 287 1 602 195 18 0 chr6 125715112 125715225 -56700017 - FRAM SINE Alu -24 152 38 676 284 206 23 chr6 125715281 125715464 -56699778 - L2 LINE L2 -5 3308 3160 2340 90 0 34 chr6 125715464 125715787 -56699455 + AluSx SINE Alu 1 312 0 676 284 206 23 chr6 125715787 125716052 -56699190 - L2 LINE L2 -153 3160 2783 1978 122 7 10 chr6 125716107 125716401 -56698841 + AluJb SINE Alu 1 293 -19 3996 154 40 19 chr6 125716658 125717410 -56697832 - LTR39 LTR ERV1 -15 768 1 232 301 16 57 chr6 125717443 125717566 -56697676 + HAL1 LINE L1 279 396 -2111 829 136 8 0 chr6 125717664 125717782 -56697460 + AluJb SINE Alu 1 119 -193 2028 198 50 36 chr6 125717782 125718307 -56696935 + MLT2B3 LTR ERVL 23 554 0 949 274 114 52 chr6 125718436 125719171 -56696071 + HAL1 LINE L1 510 1290 -1217 2140 144 0 3 chr6 125719283 125719596 -56695646 + AluJb SINE Alu 1 312 0 182 180 40 0 chr6 125719673 125719723 -56695519 + GA-rich Low_complexity Low_complexity 4 55 0 703 150 0 63 chr6 125719815 125719942 -56695300 + FLAM_C SINE Alu 1 119 -24 2319 161 71 11 chr6 125719957 125720409 -56694833 + MLT1D LTR MaLR 27 505 0 558 234 163 66 chr6 125720417 125720901 -56694341 + HAL1 LINE L1 1976 2506 -1 860 319 136 24 chr6 125720918 125721508 -56693734 - L2 LINE L2 -619 2695 2040 649 272 94 41 chr6 125721559 125721953 -56693289 + LTR16A LTR ERVL 16 430 -20 1477 191 68 63 chr6 125721955 125722396 -56692846 - LTR47B LTR ERVL 0 443 1 352 248 174 0 chr6 125722502 125722611 -56692631 - MER94 DNA DNA 0 134 7 336 230 20 40 chr6 125722651 125722751 -56692491 + MIR SINE MIR 37 134 -128 1516 216 40 11 chr6 125722852 125722920 -56692322 - MLT1A1 LTR MaLR -3 362 297 1446 163 132 9 chr6 125722920 125723246 -56691996 + MER47A DNA MER2_type 1 366 0 1516 216 40 11 chr6 125723246 125723529 -56691713 - MLT1A1 LTR MaLR -68 297 1 2625 176 68 9 chr6 125723935 125724463 -56690779 - MER89 LTR ERV1 0 559 1 3271 123 25 7 chr6 125724553 125724995 -56690247 + MER41B LTR ERV1 1 456 -179 2014 68 104 0 chr6 125724995 125725274 -56689968 + AluY SINE Alu 1 308 -3 3271 123 25 7 chr6 125725274 125725382 -56689860 + MER41B LTR ERV1 456 561 -74 2413 77 0 19 chr6 125725755 125726067 -56689175 + AluSc SINE Alu 1 306 -3 306 0 0 0 chr6 125726498 125726532 -56688710 + (CCG)n Simple_repeat Simple_repeat 3 36 0 1170 23 0 0 chr6 125727374 125727504 -56687738 + AluY SINE Alu 4 133 -178 1278 78 11 42 chr6 125727540 125727731 -56687511 + AluY SINE Alu 115 299 -12 24 0 0 0 chr6 125728164 125728188 -56687054 + AT_rich Low_complexity Low_complexity 1 24 0 267 167 0 0 chr6 125728498 125728546 -56686696 + Charlie7 DNA MER1_type 43 90 -2522 319 201 110 13 chr6 125728562 125728716 -56686526 + Charlie7 DNA MER1_type 2444 2612 0 25 31 0 0 chr6 125728775 125728807 -56686435 + AT_rich Low_complexity Low_complexity 1 32 0 2298 75 0 56 chr6 125728963 125729283 -56685959 - AluY SINE Alu -9 302 1 2140 131 0 6 chr6 125729285 125729599 -56685643 - AluSx SINE Alu 0 312 1 1624 197 57 37 chr6 125730194 125730650 -56684592 + L1ME1 LINE L1 5423 5887 -279 4001 117 7 3 chr6 125730681 125731281 -56683961 - L1PA14 LINE L1 -12 6149 5548 1649 155 16 53 chr6 125731281 125731604 -56683638 - AluJo SINE Alu -1 311 1 5287 142 23 1 chr6 125731606 125732672 -56682570 - L1P4 LINE L1 -674 5487 4398 822 218 87 16 chr6 125732676 125732928 -56682314 + L1ME1 LINE L1 5879 6148 -18 291 330 30 64 chr6 125733007 125733240 -56682002 + L2 LINE L2 2380 2604 -710 258 313 149 46 chr6 125733300 125733495 -56681747 + L2 LINE L2 2763 2977 -337 27 29 0 0 chr6 125734855 125734889 -56680353 + AT_rich Low_complexity Low_complexity 1 34 0 234 81 0 0 chr6 125735461 125735498 -56679744 + (CTATT)n Simple_repeat Simple_repeat 1 37 0 657 157 0 0 chr6 125735502 125735604 -56679638 - FLAM_C SINE Alu -24 119 18 264 279 13 38 chr6 125735644 125735723 -56679519 + L2 LINE L2 3194 3270 -2 2062 102 38 0 chr6 125735759 125736052 -56679190 + AluY SINE Alu 1 304 -7 1200 203 34 58 chr6 125736134 125736334 -56678908 + MER2 DNA MER2_type 28 231 -114 2163 99 3 0 chr6 125736334 125736642 -56678600 + AluSx SINE Alu 2 310 0 1200 203 34 58 chr6 125736642 125736678 -56678564 + MER2 DNA MER2_type 231 266 -79 595 246 0 0 chr6 125736678 125736804 -56678438 - FLAM_A SINE Alu -7 126 1 1200 203 34 58 chr6 125736804 125736891 -56678351 + MER2 DNA MER2_type 266 345 0 27 29 0 0 chr6 125737833 125737867 -56677375 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr6 125738092 125738121 -56677121 + AT_rich Low_complexity Low_complexity 1 29 0 9682 34 0 0 chr6 125738121 125740057 -56675185 - L1PA4 LINE L1 0 6155 4220 1426 203 78 4 chr6 125740334 125740615 -56674627 - AluJb SINE Alu -10 302 1 225 256 47 23 chr6 125741253 125741339 -56673903 - HAL1b LINE L1 -625 723 636 188 341 46 46 chr6 125745399 125745572 -56669670 - L2 LINE L2 -181 3091 2919 1636 171 8 0 chr6 125745577 125745835 -56669407 + AluJo SINE Alu 2 261 -51 225 108 0 0 chr6 125745844 125745881 -56669361 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 448 266 50 8 chr6 125746021 125746168 -56669074 + Charlie8 DNA MER1_type 4 173 -2244 21 0 0 0 chr6 125746612 125746633 -56668609 + AT_rich Low_complexity Low_complexity 1 21 0 210 336 60 35 chr6 125746871 125746987 -56668255 + MIR3 SINE MIR 53 171 -37 217 225 0 50 chr6 125747323 125747403 -56667839 + CT-rich Low_complexity Low_complexity 3 78 0 1708 152 54 0 chr6 125747787 125748063 -56667179 + AluSx SINE Alu 1 291 -21 276 281 110 12 chr6 125748069 125748151 -56667091 - MIR SINE MIR -138 124 35 603 284 78 49 chr6 125748393 125748650 -56666592 - L1ME4a LINE L1 -237 5884 5613 2314 94 0 0 chr6 125748650 125748949 -56666293 - AluSq SINE Alu -14 299 1 603 284 78 49 chr6 125748949 125749039 -56666203 - L1ME4a LINE L1 -508 5613 5527 1194 172 159 52 chr6 125749286 125749428 -56665814 - MER7A DNA MER2_type -2718 320 195 2041 135 3 3 chr6 125749428 125749724 -56665518 - AluSx SINE Alu -16 296 1 1194 172 159 52 chr6 125749724 125749871 -56665371 - MER7A DNA MER2_type -2843 195 2 1606 170 50 7 chr6 125749981 125750263 -56664979 - AluJb SINE Alu -18 294 1 21 36 0 0 chr6 125750297 125750325 -56664917 + AT_rich Low_complexity Low_complexity 1 28 0 2134 102 3 0 chr6 125751794 125752077 -56663165 + AluSp SINE Alu 1 284 -29 2284 78 0 3 chr6 125752268 125752562 -56662680 + AluY SINE Alu 1 293 -18 21 0 0 0 chr6 125752659 125752680 -56662562 + AT_rich Low_complexity Low_complexity 1 21 0 869 237 11 0 chr6 125752838 125753024 -56662218 + MER58A DNA MER1_type 1 188 -36 3277 179 44 12 chr6 125753171 125753852 -56661390 - L1MB5 LINE L1 -36 6636 5934 1549 208 29 41 chr6 125753849 125754170 -56661072 - L1MB5 LINE L1 -1518 5126 4810 * 1956 148 0 10 chr6 125754170 125754473 -56660769 - AluSx SINE Alu -12 300 1 1549 208 29 41 chr6 125754473 125754594 -56660648 - L1MB5 LINE L1 -1834 4810 4689 396 227 0 0 chr6 125754594 125754669 -56660573 + FAM SINE Alu 1 75 -100 938 142 0 7 chr6 125754669 125754810 -56660432 - AluSg/x SINE Alu -98 214 75 533 206 0 21 chr6 125754814 125754911 -56660331 + FAM SINE Alu 64 158 -27 2781 246 102 42 chr6 125754922 125755153 -56660089 - L1MB5 LINE L1 -1937 4707 4491 2156 106 14 0 chr6 125755153 125755445 -56659797 - AluSc SINE Alu -13 296 1 2781 246 102 42 chr6 125755445 125755789 -56659453 - L1MB5 LINE L1 -2153 4491 4169 956 132 44 0 chr6 125755789 125755948 -56659294 - L1MA1 LINE L1 -7 6295 6130 2781 246 102 42 chr6 125755948 125756260 -56658982 - L1MB5 LINE L1 -2475 4169 3877 189 0 0 0 chr6 125756260 125756281 -56658961 + (TA)n Simple_repeat Simple_repeat 2 22 0 2126 120 3 0 chr6 125756281 125756580 -56658662 - AluSx SINE Alu -12 300 1 2781 246 102 42 chr6 125756580 125756925 -56658317 - L1MB5 LINE L1 -2767 3877 3378 243 0 0 0 chr6 125756925 125756952 -56658290 + (TG)n Simple_repeat Simple_repeat 2 28 0 2781 246 102 42 chr6 125756952 125757089 -56658153 - L1MB5 LINE L1 -3266 3378 3251 1164 162 5 46 chr6 125757091 125757307 -56657935 - AluSx SINE Alu -105 207 1 1907 157 10 0 chr6 125757334 125757627 -56657615 - AluSx SINE Alu -16 296 1 691 186 23 122 chr6 125757631 125757768 -56657474 - L1MB5 LINE L1 -3707 2937 2788 338 48 0 0 chr6 125757768 125757810 -56657432 + U2 snRNA snRNA 1 42 -146 691 186 23 122 chr6 125757810 125758024 -56657218 - L1MB5 LINE L1 -3856 2788 2595 818 163 0 0 chr6 125758028 125758151 -56657091 - FLAM_C SINE Alu -20 123 1 22 0 0 0 chr6 125758177 125758199 -56657043 + AT_rich Low_complexity Low_complexity 1 22 0 4639 243 50 28 chr6 125758205 125760545 -56654697 - L1MB5 LINE L1 -4143 2503 11 2174 109 3 0 chr6 125761022 125761324 -56653918 + AluSg SINE Alu 1 303 -7 233 326 67 11 chr6 125761945 125762034 -56653208 - MIR3 SINE MIR -29 179 86 1745 231 0 16 chr6 125762360 125762736 -56652506 - Charlie1a DNA MER1_type -1085 370 1 316 310 57 101 chr6 125762737 125762859 -56652383 + L2 LINE L2 2958 3084 -229 2072 210 108 32 chr6 125762859 125763541 -56651701 - MER50 LTR ERV1 0 734 1 316 310 57 101 chr6 125763541 125763642 -56651600 + L2 LINE L2 3084 3188 -125 2407 88 0 0 chr6 125763642 125763949 -56651293 - AluSx SINE Alu -5 307 1 316 310 57 101 chr6 125763949 125764092 -56651150 + L2 LINE L2 3188 3309 -4 2109 108 3 52 chr6 125764146 125764470 -56650772 - AluSx SINE Alu -4 308 1 890 270 91 99 chr6 125764473 125764952 -56650290 - HAL1 LINE L1 -1407 1100 631 1726 158 7 17 chr6 125764952 125765249 -56649993 + AluJb SINE Alu 1 294 -18 890 270 91 99 chr6 125765249 125765715 -56649527 - HAL1 LINE L1 -1876 631 163 1553 154 118 4 chr6 125765956 125766235 -56649007 + AluJb SINE Alu 1 311 -1 1024 83 8 0 chr6 125766707 125766839 -56648403 - AluSp SINE Alu -180 133 1 263 167 83 17 chr6 125766944 125767004 -56648238 - MIR SINE MIR 0 262 199 25 99 0 0 chr6 125767371 125767452 -56647790 + AT_rich Low_complexity Low_complexity 1 81 0 272 333 114 9 chr6 125767931 125768036 -56647206 - L2 LINE L2 -8 3264 3149 1915 251 206 27 chr6 125768544 125769584 -56645658 + L1MC4 LINE L1 6470 7588 -220 1369 178 45 63 chr6 125769995 125770161 -56645081 - AluJo SINE Alu -30 282 122 180 0 0 0 chr6 125770161 125770181 -56645061 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1369 178 45 63 chr6 125770181 125770300 -56644942 - AluJo SINE Alu -190 122 2 198 0 0 0 chr6 125771448 125771470 -56643772 + (TG)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr6 125771747 125771768 -56643474 + AT_rich Low_complexity Low_complexity 1 21 0 357 272 59 44 chr6 125772541 125772677 -56642565 + MIR SINE MIR 19 156 -106 1367 184 69 48 chr6 125772689 125773021 -56642221 - MER2 DNA MER2_type -1 344 6 191 176 29 0 chr6 125773836 125773870 -56641372 - L2 LINE L2 -24 3289 3255 790 224 67 0 chr6 125774080 125774245 -56640997 - MIR SINE MIR -79 183 8 417 20 0 0 chr6 125774545 125774595 -56640647 + (TG)n Simple_repeat Simple_repeat 2 51 0 2006 156 0 0 chr6 125775471 125775773 -56639469 - AluSx SINE Alu -10 302 1 317 271 142 49 chr6 125775817 125776142 -56639100 - L1M4 LINE L1 -350 5771 5417 272 202 127 14 chr6 125777156 125777256 -56637986 - MIR3 SINE MIR -27 181 70 432 0 0 0 chr6 125777461 125777509 -56637733 + (TA)n Simple_repeat Simple_repeat 1 48 0 218 267 13 0 chr6 125777883 125777958 -56637284 + T-rich Low_complexity Low_complexity 1 76 0 24 32 0 0 chr6 125778968 125778999 -56636243 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr6 125779957 125779980 -56635262 + (GCTTG)n Simple_repeat Simple_repeat 2 24 0 255 133 0 0 chr6 125780103 125780148 -56635094 + (A)n Simple_repeat Simple_repeat 1 45 0 31 0 0 0 chr6 125780993 125781024 -56634218 + AT_rich Low_complexity Low_complexity 1 31 0 867 233 135 21 chr6 125781126 125781504 -56633738 + L1MEc LINE L1 2103 2523 -3873 1275 172 175 0 chr6 125781509 125781800 -56633442 + L1MB8 LINE L1 5712 6053 -125 288 184 0 0 chr6 125781845 125781894 -56633348 - Charlie5 DNA MER1_type -2525 87 39 1166 234 179 4 chr6 125781988 125782446 -56632796 - L1MEc LINE L1 -5022 1374 837 1712 266 130 16 chr6 125782504 125783113 -56632129 - L1MEc LINE L1 -5682 714 37 295 265 168 16 chr6 125783234 125783419 -56631823 - L1M4 LINE L1 -2969 3177 2965 17812 29 5 0 chr6 125783471 125786394 -56628848 + L1PA3 LINE L1 3223 6155 0 243 250 24 24 chr6 125786462 125786546 -56628696 - L1M4 LINE L1 -3382 2764 2681 342 282 49 35 chr6 125786608 125786750 -56628492 - L1M4 LINE L1 -3577 2569 2426 5377 134 42 21 chr6 125788735 125788889 -56626353 - L1MA7 LINE L1 0 6291 6142 2010 138 0 20 chr6 125788889 125789194 -56626048 - AluSx SINE Alu -13 299 1 5377 134 42 21 chr6 125789194 125790140 -56625102 - L1MA7 LINE L1 -149 6142 5169 1159 245 60 85 chr6 125790163 125790786 -56624456 - LTR19C LTR ERV1 0 779 1 4797 162 42 8 chr6 125790789 125791727 -56623515 - L1MA7 LINE L1 -998 5148 4180 1047 227 31 66 chr6 125791718 125792150 -56623092 - L1MC5 LINE L1 -908 6900 6611 * 2202 110 3 0 chr6 125792157 125792448 -56622794 - AluSp SINE Alu -20 293 2 2323 91 0 7 chr6 125792449 125792758 -56622484 - AluSq SINE Alu -6 307 1 2868 191 31 15 chr6 125792874 125793419 -56621823 - MLT2B3 LTR ERVL 0 554 1 761 268 29 0 chr6 125793820 125794029 -56621213 - L1MC5 LINE L1 -1898 5910 5696 400 330 0 0 chr6 125794059 125794177 -56621065 - L1MC5 LINE L1 -2208 5600 5483 301 213 55 56 chr6 125794235 125794359 -56620883 - L1MB8 LINE L1 -20 6151 6024 1655 196 12 12 chr6 125794624 125794955 -56620287 + MLT2C1 LTR ERVL 1 331 -66 431 63 16 0 chr6 125794958 125795021 -56620221 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 216 205 0 0 chr6 125795023 125795062 -56620180 + (CATATA)n Simple_repeat Simple_repeat 5 43 0 227 316 29 36 chr6 125795482 125795621 -56619621 - L1MEd LINE L1 -5979 140 3 521 306 97 16 chr6 125795683 125795931 -56619311 + Charlie2b DNA MER1_type 31 298 -2484 254 293 0 0 chr6 125795938 125796020 -56619222 + Charlie2b DNA MER1_type 556 637 -2145 1461 202 31 20 chr6 125796022 125796378 -56618864 + L1MA4 LINE L1 5941 6300 0 315 222 25 49 chr6 125796543 125796624 -56618618 + Tigger3(Golem) DNA MER2_type 2 80 -2949 672 200 0 0 chr6 125796755 125796865 -56618377 + Tigger3(Golem) DNA MER2_type 2929 3038 0 617 159 36 51 chr6 125796867 125797005 -56618237 + Charlie2a DNA MER1_type 1527 1662 -1200 399 220 64 28 chr6 125797011 125797152 -56618090 + Charlie2a DNA MER1_type 2716 2861 -1 1109 260 122 7 chr6 125797399 125797834 -56617408 + L1ME3A LINE L1 5682 6166 -4 438 94 0 0 chr6 125798098 125798162 -56617080 + (TA)n Simple_repeat Simple_repeat 2 65 0 338 316 22 69 chr6 125798408 125798683 -56616559 + L2 LINE L2 2314 2575 -739 1891 254 129 21 chr6 125798720 125799338 -56615904 - L2 LINE L2 -640 2674 1990 183 303 25 98 chr6 125799629 125799751 -56615491 + L3 LINE CR1 1288 1400 -177 13774 119 27 16 chr6 125800024 125802184 -56613058 + Tigger1 DNA MER2_type 2 2186 -232 663 169 76 0 chr6 125802183 125802301 -56612941 + Tigger1 DNA MER2_type 2292 2418 0 * 797 263 43 33 chr6 125802382 125802683 -56612559 + Charlie7 DNA MER1_type 1918 2221 -391 1567 171 7 37 chr6 125802858 125803157 -56612085 + AluJb SINE Alu 9 298 -14 984 274 244 7 chr6 125803163 125803713 -56611529 - L2 LINE L2 -1322 1992 1313 374 304 113 25 chr6 125803727 125804523 -56610719 - L1M4 LINE L1 -755 5391 4526 2368 55 16 22 chr6 125804682 125804993 -56610249 - AluY SINE Alu -2 309 1 635 284 176 15 chr6 125805041 125805554 -56609688 + L2 LINE L2 2712 3311 -2 322 196 87 43 chr6 125806990 125807082 -56608160 + L1MC4 LINE L1 6608 6703 -1339 249 232 0 0 chr6 125807084 125807153 -56608089 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 27 0 0 0 chr6 125809154 125809181 -56606061 + AT_rich Low_complexity Low_complexity 1 27 0 249 245 239 65 chr6 125811187 125811371 -56603871 - L3 LINE CR1 -104 1473 1258 1434 216 7 0 chr6 125811534 125811826 -56603416 - AluJo SINE Alu -13 299 6 258 336 119 21 chr6 125812316 125812459 -56602783 + MIR SINE MIR 20 176 -86 188 261 80 34 chr6 125812540 125812628 -56602614 - L2 LINE L2 -186 3127 3036 243 333 0 0 chr6 125812770 125812842 -56602400 + L2 LINE L2 3242 3313 0 221 340 0 58 chr6 125812914 125813017 -56602225 + L2 LINE L2 3176 3272 0 23 54 0 0 chr6 125813466 125813503 -56601739 + AT_rich Low_complexity Low_complexity 1 37 0 2248 84 7 13 chr6 125813548 125813857 -56601385 - AluSq SINE Alu -6 307 1 426 277 36 9 chr6 125813862 125813974 -56601268 - L2 LINE L2 0 3313 3199 188 35 35 0 chr6 125814625 125814654 -56600588 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 671 293 114 32 chr6 125814854 125815132 -56600110 + L2 LINE L2 2702 2956 -357 2148 120 0 3 chr6 125815132 125815431 -56599811 - AluSc SINE Alu -11 298 1 671 293 114 32 chr6 125815431 125815722 -56599520 + L2 LINE L2 2956 3313 0 1861 160 0 0 chr6 125816172 125816507 -56598735 + AluJb SINE Alu 1 335 0 2370 84 0 40 chr6 125817294 125817617 -56597625 - AluSp SINE Alu -3 310 1 345 275 144 10 chr6 125819562 125819801 -56595441 - L1ME3 LINE L1 -287 5875 5605 50 51 0 0 chr6 125820114 125820192 -56595050 + AT_rich Low_complexity Low_complexity 1 78 0 15429 34 4 0 chr6 125820193 125822769 -56592473 - L1PA4 LINE L1 -1 6154 3519 1360 94 10 10 chr6 125822776 125822979 -56592263 - L1PB2 LINE L1 -4 6147 5945 198 0 0 0 chr6 125822979 125823001 -56592241 + (TA)n Simple_repeat Simple_repeat 2 23 0 3451 85 12 2 chr6 125823002 125823498 -56591744 - L1PB2 LINE L1 -372 5779 5279 2264 76 0 27 chr6 125823959 125824260 -56590982 - AluY SINE Alu -17 294 2 1388 97 77 0 chr6 125824314 125824510 -56590732 - AluSg/x SINE Alu -18 294 84 1946 103 0 39 chr6 125824685 125824995 -56590247 - AluSq SINE Alu -15 298 1 219 36 0 0 chr6 125826189 125826217 -56589025 + (TG)n Simple_repeat Simple_repeat 1 28 0 1477 182 72 10 chr6 125826379 125826670 -56588572 - AluSx SINE Alu -1 311 3 21 0 0 0 chr6 125826880 125826901 -56588341 + AT_rich Low_complexity Low_complexity 1 21 0 2228 90 0 17 chr6 125827198 125827499 -56587743 - AluSx SINE Alu -16 296 1 341 297 76 65 chr6 125827587 125827877 -56587365 - L1MC4a LINE L1 -1910 5898 5606 298 0 23 23 chr6 125827884 125827927 -56587315 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1409 186 35 8 chr6 125827929 125828187 -56587055 - AluJo SINE Alu -33 279 15 335 321 130 8 chr6 125828618 125828749 -56586493 + MIR SINE MIR 37 183 -79 264 167 26 26 chr6 125829589 125829667 -56585575 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 1690 167 14 4 chr6 125829982 125830296 -56584946 - AluJb SINE Alu 0 317 1 247 317 50 20 chr6 125830562 125830663 -56584579 - MIR3 SINE MIR -1 207 104 248 320 16 16 chr6 125830677 125830805 -56584437 - MLT1L LTR MaLR -6 609 482 21 57 0 0 chr6 125831357 125831392 -56583850 + AT_rich Low_complexity Low_complexity 1 35 0 2263 153 55 35 chr6 125831663 125832153 -56583089 + L1MA7 LINE L1 5791 6290 -1 515 237 25 0 chr6 125832583 125832701 -56582541 - MLT1J LTR MaLR -105 406 286 22 56 0 0 chr6 125833465 125833501 -56581741 + AT_rich Low_complexity Low_complexity 1 36 0 2347 114 0 0 chr6 125833608 125833916 -56581326 + AluSq SINE Alu 1 308 -5 307 267 26 86 chr6 125834732 125834848 -56580394 + L2 LINE L2 3189 3297 -16 509 317 139 43 chr6 125835303 125835855 -56579387 - L2 LINE L2 -676 2638 2034 216 297 198 15 chr6 125836241 125836443 -56578799 + L2 LINE L2 2227 2465 -849 258 370 47 98 chr6 125836753 125837140 -56578102 + L2 LINE L2 2897 3263 -9 288 292 0 0 chr6 125838796 125838868 -56576374 + GA-rich Low_complexity Low_complexity 2 73 0 410 324 50 37 chr6 125838962 125839203 -56576039 + MIR SINE MIR 18 261 -1 33 90 0 0 chr6 125841659 125841748 -56573494 + AT_rich Low_complexity Low_complexity 1 89 0 3564 19 0 0 chr6 125842266 125842679 -56572563 - L1PA3 LINE L1 0 6155 5743 3838 271 139 17 chr6 125843374 125843991 -56571251 - L2 LINE L2 0 3313 2773 2071 131 3 3 chr6 125843991 125844289 -56570953 + AluSg SINE Alu 6 303 -7 3838 271 139 17 chr6 125844289 125845558 -56569684 - L2 LINE L2 -540 2773 1199 180 0 0 0 chr6 125845560 125845580 -56569662 + (TCCCC)n Simple_repeat Simple_repeat 2 21 0 718 192 6 12 chr6 125845584 125845751 -56569491 + CT-rich Low_complexity Low_complexity 1 166 0 189 107 0 0 chr6 125845764 125845792 -56569450 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 342 262 48 56 chr6 125845796 125845922 -56569320 - L2 LINE L2 -2126 1188 1064 227 296 28 28 chr6 125846354 125846425 -56568817 + MIR SINE MIR 47 117 -91 306 334 165 28 chr6 125848344 125848781 -56566461 + L2 LINE L2 2260 2756 -558 408 319 0 0 chr6 125848830 125848924 -56566318 + MER5A DNA MER1_type 10 103 -86 298 321 75 15 chr6 125849305 125849439 -56565803 + L2 LINE L2 3168 3309 -4 639 249 138 0 chr6 125853033 125853222 -56562020 - MER58C DNA MER1_type 0 215 1 204 200 0 0 chr6 125853349 125853394 -56561848 + T-rich Low_complexity Low_complexity 1 45 0 467 317 70 40 chr6 125854291 125854490 -56560752 + L2 LINE L2 2728 2932 -382 229 348 11 11 chr6 125855586 125855675 -56559567 + L2 LINE L2 3224 3312 -1 203 344 195 8 chr6 125855791 125855919 -56559323 + L2 LINE L2 2826 2977 -337 23 0 0 0 chr6 125855937 125855960 -56559282 + AT_rich Low_complexity Low_complexity 1 23 0 53 49 0 0 chr6 125856105 125856186 -56559056 + AT_rich Low_complexity Low_complexity 1 81 0 8071 205 25 42 chr6 125856195 125858025 -56557217 + L1MA4A LINE L1 1092 2952 -3896 10515 63 7 2 chr6 125858025 125860151 -56555091 + L1PA6 LINE L1 4024 6154 0 8071 205 25 42 chr6 125860151 125860586 -56554656 + L1MA4A LINE L1 2952 3308 -3540 2046 146 0 0 chr6 125860586 125860873 -56554369 + AluSx SINE Alu 3 289 -23 8071 205 25 42 chr6 125860873 125861216 -56554026 + L1MA4A LINE L1 3308 3655 -3193 1517 156 8 4 chr6 125861220 125861464 -56553778 - MSTA LTR MaLR 0 428 184 2298 143 21 5 chr6 125861466 125861838 -56553404 - MSTA-int LTR MaLR 0 1651 1274 42483 35 22 4 chr6 125861907 125863636 -56551606 + L1PA2 LINE L1 1 1696 -4459 2845 10 0 0 chr6 125863636 125863947 -56551295 + AluYa5 SINE Alu 1 311 0 42483 35 22 4 chr6 125863947 125868256 -56546986 + L1PA2 LINE L1 1696 6154 -1 207 100 0 0 chr6 125868275 125868305 -56546937 + (A)n Simple_repeat Simple_repeat 1 30 0 3840 161 40 11 chr6 125868305 125868471 -56546771 - MSTA-int LTR MaLR -928 723 563 194 0 39 0 chr6 125868471 125868497 -56546745 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3840 161 40 11 chr6 125868497 125869033 -56546209 - MSTA-int LTR MaLR -1088 563 1 2628 146 26 0 chr6 125869033 125869450 -56545792 - MSTA LTR MaLR 0 428 1 11484 166 30 10 chr6 125869450 125872734 -56542508 + L1MA4A LINE L1 3655 7002 -3 258 241 83 56 chr6 125872811 125872919 -56542323 + L2 LINE L2 3196 3306 -7 289 293 57 121 chr6 125873425 125873565 -56541677 - MIR3 SINE MIR -37 171 41 434 100 0 0 chr6 125875360 125875420 -56539822 - Alu SINE Alu -15 295 236 24 0 0 0 chr6 125876055 125876079 -56539163 + AT_rich Low_complexity Low_complexity 1 24 0 468 273 93 13 chr6 125876180 125876330 -56538912 + MIR SINE MIR 20 181 -81 2238 119 3 3 chr6 125876454 125876766 -56538476 - AluSq SINE Alu -1 312 1 3187 88 31 2 chr6 125879802 125880255 -56534987 - L1PA10 LINE L1 -5 6163 5698 504 106 0 0 chr6 125880320 125880405 -56534837 + (TA)n Simple_repeat Simple_repeat 1 85 0 2222 140 88 25 chr6 125880407 125880815 -56534427 + Tigger2a DNA MER2_type 1 434 0 474 283 82 22 chr6 125881646 125881830 -56533412 + L2 LINE L2 3118 3312 -1 2856 279 114 23 chr6 125883180 125883454 -56531788 - L2 LINE L2 -1 3312 3064 6665 38 48 0 chr6 125883454 125884288 -56530954 + L1PA5 LINE L1 5273 6146 -8 2856 279 114 23 chr6 125884288 125885367 -56529875 - L2 LINE L2 -249 3064 1860 1609 172 97 9 chr6 125885852 125886171 -56529071 + MER7A DNA MER2_type 2 346 0 1440 190 37 29 chr6 125886217 125886360 -56528882 - L1MDa LINE L1 -4364 2176 2036 2038 214 32 36 chr6 125886360 125886920 -56528322 + MER74A LTR ERVL 1 558 0 1440 190 37 29 chr6 125886920 125887124 -56528118 - L1MDa LINE L1 -4504 2036 1826 2162 247 76 51 chr6 125888972 125889214 -56526028 + L1ME3A LINE L1 5237 5472 -698 2262 113 0 0 chr6 125889214 125889523 -56525719 + AluSx SINE Alu 1 309 -3 2162 247 76 51 chr6 125889523 125890190 -56525052 + L1ME3A LINE L1 5472 6169 -1 466 250 114 54 chr6 125890206 125890574 -56524668 - L1M4 LINE L1 -3617 2529 2140 2053 269 82 14 chr6 125890849 125891757 -56523485 - L1ME3 LINE L1 -2 6143 5178 528 304 80 24 chr6 125892170 125892395 -56522847 + MIR SINE MIR 17 247 -15 26 64 0 0 chr6 125892659 125892706 -56522536 + AT_rich Low_complexity Low_complexity 1 47 0 623 293 57 70 chr6 125892835 125893207 -56522035 + L2 LINE L2 2947 3313 0 195 204 0 0 chr6 125893430 125893474 -56521768 + (CAT)n Simple_repeat Simple_repeat 3 46 0 2420 136 53 15 chr6 125893612 125894024 -56521218 + MSTA LTR MaLR 1 428 0 1135 233 77 0 chr6 125894034 125894373 -56520869 - L1ME3 LINE L1 -2160 3969 3605 1261 128 140 92 chr6 125894373 125894731 -56520511 + THE1C LTR MaLR 1 375 0 9485 139 10 41 chr6 125894733 125895087 -56520155 + THE1C-int LTR MaLR 3 366 -1214 1904 212 58 54 chr6 125895087 125895639 -56519603 + MLT2B3 LTR ERVL 1 554 0 9485 139 10 41 chr6 125895639 125896912 -56518330 + THE1C-int LTR MaLR 366 1580 0 996 148 138 7 chr6 125896912 125897136 -56518106 + MSTA LTR MaLR 1 238 -137 5095 156 8 16 chr6 125897137 125898030 -56517212 + L1PA11 LINE L1 2089 2974 -3172 11546 145 14 1 chr6 125898030 125898419 -56516823 + L1PA11 LINE L1 3365 3747 -2427 1901 147 14 7 chr6 125898419 125898704 -56516538 + AluSx SINE Alu 5 291 -21 11546 145 14 1 chr6 125898704 125901108 -56514134 + L1PA11 LINE L1 3747 6162 -12 2190 85 3 16 chr6 125901113 125901419 -56513823 + AluY SINE Alu 7 308 -3 875 146 158 6 chr6 125901419 125901584 -56513658 + MSTA LTR MaLR 239 428 0 2994 254 72 35 chr6 125901603 125902106 -56513136 - L1ME3 LINE L1 -2542 3587 3104 6971 56 2 36 chr6 125902106 125903293 -56511949 - L1PA7 LINE L1 0 6154 4979 2994 254 72 35 chr6 125903293 125904060 -56511182 - L1ME3 LINE L1 -3025 3104 2271 225 286 53 8 chr6 125904062 125904195 -56511047 - L1ME3 LINE L1 -5004 1306 1168 1908 212 32 70 chr6 125904230 125904762 -56510480 + MLT2B1 LTR ERVL 1 512 -8 586 294 82 72 chr6 125904773 125905260 -56509982 - L1ME3 LINE L1 -5034 1085 594 535 318 55 14 chr6 125906381 125906598 -56508644 - MIR SINE MIR -35 227 2 1045 248 100 6 chr6 125906800 125907139 -56508103 - LTR33A LTR ERVL -8 515 145 766 201 134 18 chr6 125907440 125907664 -56507578 + MER20B DNA MER1_type 59 308 -475 1010 90 0 8 chr6 125907675 125907808 -56507434 - AluY SINE Alu -179 132 1 592 213 20 47 chr6 125907809 125907835 -56507407 + MER20B DNA MER1_type 305 330 -453 2340 154 67 2 chr6 125907835 125908237 -56507005 + MSTA LTR MaLR 1 428 0 592 213 20 47 chr6 125908237 125908360 -56506882 + MER20B DNA MER1_type 330 450 -333 696 166 171 29 chr6 125908403 125908608 -56506634 + MER20B DNA MER1_type 550 783 0 596 340 41 8 chr6 125908675 125908919 -56506323 + MIR SINE MIR 11 262 0 2712 99 8 0 chr6 125910685 125911057 -56504185 + THE1C LTR MaLR 1 375 0 272 49 49 0 chr6 125911181 125911222 -56504020 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 216 0 0 0 chr6 125911251 125911275 -56503967 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1884 126 3 11 chr6 125911294 125911715 -56503527 - AluSx SINE Alu 0 419 1 189 270 81 40 chr6 125912644 125912718 -56502524 + MER5A DNA MER1_type 113 189 0 545 272 134 76 chr6 125914413 125914637 -56500605 - MLT1H LTR MaLR 0 549 319 366 351 86 25 chr6 125915225 125915470 -56499772 + L2 LINE L2 2898 3157 -115 209 302 0 0 chr6 125915575 125915628 -56499614 - L2 LINE L2 0 3313 3261 401 41 0 0 chr6 125916247 125916296 -56498946 + L1PA6 LINE L1 6099 6147 -7 2000 131 3 3 chr6 125917438 125917728 -56497514 + AluSx SINE Alu 1 290 -22 1650 187 23 20 chr6 125917757 125918110 -56497132 - L1MB7 LINE L1 -15 6169 5816 428 136 0 15 chr6 125918116 125918182 -56497060 - AluSx SINE Alu -18 292 228 898 166 0 7 chr6 125918182 125918327 -56496915 - AluSx SINE Alu -126 186 43 2695 176 92 5 chr6 125918333 125919214 -56496028 - L1MB7 LINE L1 -366 5818 4851 248 310 11 0 chr6 125919555 125919642 -56495600 - MIR SINE MIR -14 248 161 556 230 104 89 chr6 125919655 125919981 -56495261 - LTR16A1 LTR ERVL -23 434 104 307 206 108 20 chr6 125920098 125920200 -56495042 - MIR SINE MIR -81 181 71 541 261 0 7 chr6 125920654 125920807 -56494435 - L1MB7 LINE L1 -2554 3592 3441 282 29 0 0 chr6 125920971 125921006 -56494236 + (CA)n Simple_repeat Simple_repeat 2 36 0 192 40 0 0 chr6 125922571 125922596 -56492646 + (CCCCG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr6 125923887 125923908 -56491334 + AT_rich Low_complexity Low_complexity 1 21 0 38 0 0 0 chr6 125924199 125924237 -56491005 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr6 125924712 125924736 -56490506 + AT_rich Low_complexity Low_complexity 1 24 0 524 295 16 42 chr6 125926888 125927078 -56488164 + MIR3 SINE MIR 18 202 -6 191 310 56 61 chr6 125928596 125928793 -56486449 + L2 LINE L2 1917 2112 -1202 1593 162 25 16 chr6 125928798 125929119 -56486123 - MER33 DNA MER1_type 0 324 1 239 299 43 43 chr6 125929240 125929404 -56485838 + L2 LINE L2 2686 2849 -465 202 305 127 51 chr6 125929669 125929787 -56485455 + L2 LINE L2 3179 3305 -8 408 283 78 58 chr6 125930497 125930688 -56484554 + MIR SINE MIR 2 196 -66 480 306 71 33 chr6 125930820 125931003 -56484239 - MIR SINE MIR -61 201 12 21 0 0 0 chr6 125931349 125931370 -56483872 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr6 125931545 125931586 -56483656 + AT_rich Low_complexity Low_complexity 1 41 0 2324 96 0 10 chr6 125932166 125932478 -56482764 + AluSc SINE Alu 1 309 0 253 323 128 60 chr6 125934736 125935002 -56480240 - L2 LINE L2 -64 3208 2925 247 285 234 0 chr6 125935595 125935732 -56479510 + MIR SINE MIR 91 259 -3 247 302 175 16 chr6 125935778 125935904 -56479338 + L2 LINE L2 3110 3255 -17 278 281 73 0 chr6 125936571 125936653 -56478589 + L2 LINE L2 3182 3269 -3 1852 288 101 8 chr6 125937617 125938250 -56476992 + MER115 DNA AcHobo 1 692 -1 288 0 0 0 chr6 125941029 125941061 -56474181 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 92 0 0 chr6 125941847 125941912 -56473330 + AT_rich Low_complexity Low_complexity 1 65 0 1055 157 0 22 chr6 125941925 125942103 -56473139 + AluJb SINE Alu 121 294 -18 187 286 109 67 chr6 125942132 125942251 -56472991 - MIR SINE MIR -32 230 107 235 308 128 79 chr6 125942335 125942601 -56472641 - L2 LINE L2 -56 3216 2938 822 170 27 64 chr6 125942601 125942789 -56472453 - MER20B DNA MER1_type 0 219 39 368 336 213 16 chr6 125942797 125943112 -56472130 - L2 LINE L2 -367 2947 2571 490 321 146 22 chr6 125943115 125943622 -56471620 - L2 LINE L2 -885 2429 1860 1233 128 0 0 chr6 125943713 125943885 -56471357 - AluJb SINE Alu -12 300 129 258 324 146 18 chr6 125943890 125944220 -56471022 - L2 LINE L2 -1607 1707 1336 763 184 12 25 chr6 125944237 125944400 -56470842 + MER105 DNA DNA 2 162 -42 237 271 84 51 chr6 125944577 125944791 -56470451 + L1ME LINE L1 4487 4707 -1439 21 36 0 0 chr6 125945078 125945106 -56470136 + AT_rich Low_complexity Low_complexity 1 28 0 388 306 143 10 chr6 125945209 125945418 -56469824 + L1ME LINE L1 5155 5391 -755 234 331 123 8 chr6 125945493 125945623 -56469619 + L1ME LINE L1 5495 5639 -482 2075 122 3 0 chr6 125945643 125945938 -56469304 - AluSx SINE Alu -16 296 1 28 0 0 0 chr6 125945968 125945996 -56469246 + AT_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr6 125946003 125946029 -56469213 + (TAAAAA)n Simple_repeat Simple_repeat 4 29 0 342 320 103 13 chr6 125946039 125946195 -56469047 + L1ME LINE L1 5649 5818 -303 236 191 114 99 chr6 125946275 125946298 -56468944 + L1ME3A LINE L1 5213 5234 -912 2324 147 6 0 chr6 125946298 125946658 -56468584 + MER47A DNA MER2_type 1 362 -4 236 191 114 99 chr6 125946658 125946686 -56468556 + L1ME3A LINE L1 5234 5260 -886 627 180 298 0 chr6 125946686 125946847 -56468395 - MER3 DNA MER1_type 0 209 1 236 191 114 99 chr6 125946847 125946925 -56468317 + L1ME3A LINE L1 5260 5345 -801 564 309 98 30 chr6 125947019 125947504 -56467738 + L1ME3A LINE L1 5380 5922 -247 250 175 32 16 chr6 125947732 125947795 -56467447 + A-rich Low_complexity Low_complexity 2 65 0 317 286 103 59 chr6 125948038 125948328 -56466914 - L3 LINE CR1 -144 1433 1131 635 273 154 11 chr6 125949106 125949745 -56465497 - L1ME3 LINE L1 -274 5890 5153 7112 193 27 37 chr6 125949883 125950936 -56464306 - L1MB3 LINE L1 -3 6180 5117 2130 91 4 0 chr6 125950936 125951210 -56464032 - AluSc SINE Alu -11 298 24 7112 193 27 37 chr6 125951210 125952127 -56463115 - L1MB3 LINE L1 -1066 5117 4247 207 0 0 0 chr6 125952127 125952150 -56463092 + (TG)n Simple_repeat Simple_repeat 2 24 0 7112 193 27 37 chr6 125952150 125952883 -56462359 - L1MB3 LINE L1 -1936 4247 3508 1612 244 7 0 chr6 125952882 125953296 -56461946 - L1MB3 LINE L1 -3270 2876 2460 * 423 147 0 9 chr6 125953420 125953507 -56461735 - L1M4c LINE L1 -3948 2436 2373 * 1090 193 0 0 chr6 125953506 125953708 -56461534 - L1MA4 LINE L1 -267 6033 5832 749 293 141 43 chr6 125953698 125954050 -56461192 - L1ME3 LINE L1 -1817 4329 4013 * 396 40 0 0 chr6 125954050 125954100 -56461142 + (CA)n Simple_repeat Simple_repeat 1 50 0 749 293 141 43 chr6 125954100 125954543 -56460699 - L1ME3 LINE L1 -2133 4013 3456 42 92 0 0 chr6 125954987 125955106 -56460136 + AT_rich Low_complexity Low_complexity 1 119 0 834 48 0 0 chr6 125955119 125955222 -56460020 - AluY SINE Alu -1 310 208 2082 142 12 3 chr6 125957391 125957737 -56457505 + L1PA16 LINE L1 5817 6165 -1 1894 144 13 0 chr6 125958447 125958745 -56456497 - AluSx SINE Alu -10 302 1 3692 130 25 6 chr6 125959185 125959824 -56455418 - L1MA4 LINE L1 -8 6292 5642 819 290 0 69 chr6 125960167 125960429 -56454813 - MIR SINE MIR -3 259 16 475 319 89 21 chr6 125960707 125960942 -56454300 - MIR SINE MIR -10 252 2 63 0 0 0 chr6 125961053 125961116 -56454126 + AT_rich Low_complexity Low_complexity 1 63 0 370 313 56 50 chr6 125961136 125961334 -56453908 + L2 LINE L2 3114 3312 -1 342 63 0 32 chr6 125964300 125964363 -56450879 + L1MA3 LINE L1 6245 6305 0 1264 186 57 21 chr6 125964740 125965020 -56450222 + L1MD3 LINE L1 7676 7965 -30 995 68 0 0 chr6 125965378 125965511 -56449731 - L1PA5 LINE L1 0 6154 6022 981 231 24 0 chr6 125965863 125966071 -56449171 - MER20 DNA MER1_type 0 219 7 38 51 0 0 chr6 125966080 125966139 -56449103 + AT_rich Low_complexity Low_complexity 1 59 0 1371 154 32 51 chr6 125966953 125967206 -56448036 + AluJo SINE Alu 35 282 -30 189 107 0 0 chr6 125967388 125967416 -56447826 + (T)n Simple_repeat Simple_repeat 1 28 0 29 28 0 0 chr6 125968212 125968248 -56446994 + AT_rich Low_complexity Low_complexity 1 36 0 212 303 113 35 chr6 125968807 125968949 -56446293 + MIR SINE MIR 109 261 -1 1589 139 111 4 chr6 125971418 125971698 -56443544 + AluSq SINE Alu 1 310 -3 192 245 143 10 chr6 125971875 125971973 -56443269 - MIR3 SINE MIR -13 195 85 1552 198 6 22 chr6 125973120 125973433 -56441809 - AluJo SINE Alu -4 308 1 960 343 68 12 chr6 125975736 125976473 -56438769 - L2 LINE L2 -7 3306 2522 458 282 63 22 chr6 125979084 125979286 -56435956 - MER20 DNA MER1_type 0 219 10 754 161 46 8 chr6 125979649 125979779 -56435463 - AluJo SINE Alu -177 135 1 629 118 32 166 chr6 125979886 125980073 -56435169 - AluJb SINE Alu -15 297 136 389 270 62 28 chr6 125980374 125980536 -56434706 + MER20B DNA MER1_type 31 201 -18 4812 79 24 0 chr6 125980649 125981309 -56433933 + L1PA10 LINE L1 5493 6168 0 401 0 20 0 chr6 125981867 125981916 -56433326 + (GA)n Simple_repeat Simple_repeat 2 51 0 224 135 0 39 chr6 125981928 125981980 -56433262 + (GGGGA)n Simple_repeat Simple_repeat 3 52 0 2584 35 0 13 chr6 125983064 125983379 -56431863 - AluY SINE Alu 0 311 1 1564 158 36 7 chr6 125983409 125983687 -56431555 + AluJo SINE Alu 1 286 -26 1691 162 20 14 chr6 125983697 125983994 -56431248 + AluSx SINE Alu 1 299 -13 235 229 29 57 chr6 125984141 125984211 -56431031 - L2 LINE L2 -69 3203 3136 24 0 0 0 chr6 125985474 125985498 -56429744 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 125986135 125986162 -56429080 + AT_rich Low_complexity Low_complexity 1 27 0 474 250 125 0 chr6 125986256 125986416 -56428826 + MIR SINE MIR 70 249 -13 21 36 0 0 chr6 125986980 125987008 -56428234 + AT_rich Low_complexity Low_complexity 1 28 0 183 139 0 0 chr6 125988632 125988668 -56426574 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 347 276 138 33 chr6 125988703 125988978 -56426264 + L1ME3 LINE L1 5637 5940 -230 272 315 11 0 chr6 125989749 125989841 -56425401 - L1MC/D LINE L1 -1992 5816 5724 457 345 75 52 chr6 125991382 125992037 -56423205 - L2 LINE L2 -1035 2279 1610 202 326 0 0 chr6 125993701 125993790 -56421452 + A-rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chr6 125996848 125996869 -56418373 + AT_rich Low_complexity Low_complexity 1 21 0 678 214 0 0 chr6 125996870 125996987 -56418255 - FLAM_A SINE Alu -25 117 1 27 0 0 0 chr6 125997242 125997269 -56417973 + AT_rich Low_complexity Low_complexity 1 27 0 1872 106 0 109 chr6 125997650 125997979 -56417263 - AluSx SINE Alu -19 293 1 655 288 73 10 chr6 125998084 125998289 -56416953 - MIR SINE MIR 0 262 45 223 164 33 16 chr6 125998476 125998537 -56416705 + GA-rich Low_complexity Low_complexity 3 64 0 555 340 25 0 chr6 125998793 125998996 -56416246 - MIR SINE MIR -42 220 13 2300 96 20 6 chr6 125999392 125999737 -56415505 - L1MA2 LINE L1 -9 6295 5946 266 314 45 32 chr6 125999769 125999925 -56415317 + MLT1L LTR MaLR 234 391 -224 1183 273 24 6 chr6 126002122 126002576 -56412666 - L1ME3A LINE L1 -31 6131 5579 489 171 0 0 chr6 126004149 126004231 -56411011 + ORSL DNA AcHobo 1 82 -193 198 0 0 0 chr6 126005636 126005658 -56409584 + (T)n Simple_repeat Simple_repeat 1 22 0 262 359 53 91 chr6 126006665 126006809 -56408433 + L2 LINE L2 2974 3106 -166 1464 148 21 42 chr6 126006809 126007119 -56408123 - AluJo SINE Alu 0 312 9 262 359 53 91 chr6 126007119 126007238 -56408004 + L2 LINE L2 3106 3228 -44 1507 291 128 47 chr6 126007334 126007576 -56407666 + L2 LINE L2 1910 2131 -1182 2161 170 38 31 chr6 126007576 126007999 -56407243 + MSTB LTR MaLR 1 426 0 1507 291 128 47 chr6 126007999 126008990 -56406252 + L2 LINE L2 2131 3309 -4 195 380 116 16 chr6 126009002 126009123 -56406119 - L2 LINE L2 -2 3270 3138 2463 253 21 18 chr6 126009264 126009877 -56405365 - MLT1E2 LTR MaLR -11 615 1 252 223 29 0 chr6 126010801 126010904 -56404338 + (TA)n Simple_repeat Simple_repeat 1 106 0 2449 56 0 3 chr6 126010999 126011303 -56403939 - AluY SINE Alu -8 303 1 224 293 172 10 chr6 126012217 126012316 -56402926 + L2 LINE L2 3137 3251 -21 458 107 0 13 chr6 126012357 126012432 -56402810 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 330 297 54 27 chr6 126012611 126012722 -56402520 + L2 LINE L2 3200 3313 0 271 325 134 38 chr6 126013255 126013412 -56401830 + MIR SINE MIR 7 178 -84 336 117 39 0 chr6 126013488 126013565 -56401677 + (TTA)n Simple_repeat Simple_repeat 2 81 0 375 156 0 16 chr6 126013627 126013691 -56401551 - MER5A DNA MER1_type -123 66 4 183 217 22 22 chr6 126013741 126013787 -56401455 + MER5B DNA MER1_type 132 177 -1 488 214 112 31 chr6 126015405 126015601 -56399641 - L1MC5 LINE L1 -52 7909 7698 220 126 63 9 chr6 126015624 126015735 -56399507 + (TA)n Simple_repeat Simple_repeat 2 118 0 1817 217 79 46 chr6 126015752 126016463 -56398779 - L1MC5 LINE L1 -268 7693 6960 281 270 230 8 chr6 126016764 126016890 -56398352 - L2 LINE L2 -1 3312 3159 385 262 92 14 chr6 126017332 126017473 -56397769 + MER5B DNA MER1_type 21 172 -6 26 64 0 0 chr6 126017689 126017736 -56397506 + AT_rich Low_complexity Low_complexity 1 47 0 906 140 56 0 chr6 126017807 126017985 -56397257 - L1MA6 LINE L1 -1 6299 6112 21 0 0 0 chr6 126018114 126018135 -56397107 + AT_rich Low_complexity Low_complexity 1 21 0 364 193 45 0 chr6 126019827 126019915 -56395327 - L1MC1 LINE L1 -9 6324 6233 1759 169 29 71 chr6 126021285 126021663 -56393579 + MLT1A1 LTR MaLR 4 365 0 358 309 8 49 chr6 126021789 126021872 -56393370 + L2 LINE L2 3153 3231 -41 5300 138 174 15 chr6 126021872 126022934 -56392308 + Tigger3b DNA MER2_type 1 1231 0 358 309 8 49 chr6 126022934 126022973 -56392269 + L2 LINE L2 3231 3270 -2 2330 263 80 75 chr6 126023092 126023793 -56391449 + MER69B DNA AcHobo 1 697 -1829 733 154 8 0 chr6 126023793 126023910 -56391332 + FLAM_C SINE Alu 3 120 -13 1387 193 7 35 chr6 126023918 126024208 -56391034 - AluJb SINE Alu -30 282 1 2330 263 80 75 chr6 126024208 126024704 -56390538 + MER69B DNA AcHobo 703 1213 -13 338 0 24 0 chr6 126025212 126025254 -56389988 + (TAA)n Simple_repeat Simple_repeat 3 45 0 209 267 0 0 chr6 126025286 126025331 -56389911 + MIR SINE MIR 196 240 -22 1413 206 11 54 chr6 126026136 126026486 -56388756 + L1ME1 LINE L1 5410 5744 -422 637 63 0 0 chr6 126026486 126026565 -56388677 - AluSg SINE Alu -179 131 53 1077 113 0 0 chr6 126026566 126026746 -56388496 + AluSg/x SINE Alu 142 321 0 611 225 147 50 chr6 126026746 126027004 -56388238 + L1ME1 LINE L1 5732 6014 -152 633 245 0 0 chr6 126027017 126027160 -56388082 + L1MA10 LINE L1 6189 6331 -3 28 29 0 0 chr6 126027160 126027195 -56388047 + AT_rich Low_complexity Low_complexity 1 35 0 2696 231 42 71 chr6 126027572 126028466 -56386776 - L1MEc LINE L1 -3033 3182 2264 2306 136 76 5 chr6 126028466 126028886 -56386356 + L1PA15 LINE L1 5711 6160 -5 2696 231 42 71 chr6 126028886 126029562 -56385680 - L1MEc LINE L1 -3951 2264 1661 2019 135 75 26 chr6 126029562 126029909 -56385333 + THE1B LTR MaLR 1 364 0 2696 231 42 71 chr6 126029909 126029989 -56385253 - L1MEc LINE L1 -4554 1661 1580 1599 274 31 41 chr6 126030034 126030574 -56384668 + L1MB7 LINE L1 14 548 -5994 * 1967 209 31 36 chr6 126030551 126031073 -56384169 + L1MB7 LINE L1 2800 3318 -3326 4337 196 32 14 chr6 126031073 126032233 -56383009 + L1MB7 LINE L1 5483 6656 -26 3527 276 55 27 chr6 126032271 126033748 -56381494 - L1MEc LINE L1 -4843 1553 36 751 325 143 16 chr6 126033897 126034331 -56380911 - L2 LINE L2 0 3313 2825 739 310 103 22 chr6 126034467 126034649 -56380593 + MLT1L LTR MaLR 137 303 -312 981 230 23 18 chr6 126034649 126034866 -56380376 + MER20 DNA MER1_type 1 218 -1 739 310 103 22 chr6 126034866 126035089 -56380153 + MLT1L LTR MaLR 303 575 -40 343 247 274 21 chr6 126035089 126035279 -56379963 - L2 LINE L2 -1021 2293 2056 * 962 249 4 22 chr6 126035277 126035506 -56379736 - MIR SINE MIR 0 262 38 555 178 67 92 chr6 126035507 126035703 -56379539 + MLT1A1 LTR MaLR 3 196 -169 428 353 38 17 chr6 126035768 126036003 -56379239 - L2 LINE L2 -259 3054 2815 523 248 14 28 chr6 126036013 126036154 -56379088 + MLT1A1 LTR MaLR 225 363 -2 622 325 21 4 chr6 126036207 126036444 -56378798 - L2 LINE L2 -1282 2032 1792 21 36 0 0 chr6 126037382 126037410 -56377832 + AT_rich Low_complexity Low_complexity 1 28 0 245 359 13 0 chr6 126037515 126037593 -56377649 + MIR SINE MIR 67 145 -63 270 311 28 9 chr6 126038481 126038587 -56376655 + MIR SINE MIR 107 214 -48 858 251 121 54 chr6 126038788 126039103 -56376139 - L2 LINE L2 -902 2412 2077 308 206 0 15 chr6 126039269 126039337 -56375905 + L1PA8A LINE L1 6063 6129 -2 21 0 0 0 chr6 126040370 126040391 -56374851 + AT_rich Low_complexity Low_complexity 1 21 0 2002 244 52 10 chr6 126040691 126041187 -56374055 - LTR40a LTR ERVL 0 519 3 21 36 0 0 chr6 126041514 126041542 -56373700 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr6 126041851 126041901 -56373341 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr6 126041960 126041982 -56373260 + AT_rich Low_complexity Low_complexity 1 22 0 497 77 0 8 chr6 126042243 126042315 -56372927 + MLT2B3 LTR ERVL 2 68 -329 2468 178 25 19 chr6 126042437 126042877 -56372365 + MLT2B3 LTR ERVL 69 505 -49 339 44 0 0 chr6 126042877 126042922 -56372320 + (TC)n Simple_repeat Simple_repeat 1 45 0 2934 91 4 45 chr6 126042922 126043406 -56371836 + MER4C LTR ERV1 2 465 0 321 68 0 0 chr6 126043410 126043454 -56371788 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 2468 178 25 19 chr6 126043454 126043486 -56371756 + MLT2B3 LTR ERVL 507 550 -4 531 311 58 1 chr6 126043487 126043733 -56371509 - L1ME LINE L1 -472 5649 5377 289 247 35 35 chr6 126044572 126044657 -56370585 + MIR SINE MIR 29 113 -149 536 284 19 28 chr6 126044693 126044908 -56370334 - HERVL LTR ERVL -1665 3989 3777 1409 161 93 29 chr6 126044960 126045239 -56370003 - AluJo SINE Alu -14 298 2 333 244 199 51 chr6 126045247 126045403 -56369839 - MER5A DNA MER1_type -2 187 9 320 313 45 0 chr6 126045451 126045563 -56369679 - HERVL LTR ERVL -3013 2751 2635 255 261 29 0 chr6 126045696 126045765 -56369477 - HERVL LTR ERVL -3261 2503 2433 551 340 51 51 chr6 126045807 126046237 -56369005 - HERVL LTR ERVL -3448 2316 1887 2290 109 3 0 chr6 126047667 126047970 -56367272 - AluSq SINE Alu -9 304 1 2543 118 11 8 chr6 126048291 126048665 -56366577 - THE1C LTR MaLR 0 375 1 380 88 12 113 chr6 126048909 126048989 -56366253 - Charlie5 DNA MER1_type 0 2624 2553 368 131 0 33 chr6 126048974 126049035 -56366207 - Charlie5 DNA MER1_type -2549 63 5 * 325 218 194 32 chr6 126050546 126050670 -56364572 - MIR SINE MIR 0 262 119 588 231 109 34 chr6 126051668 126051906 -56363336 + MLT1L LTR MaLR 354 609 -6 281 290 65 19 chr6 126052367 126052474 -56362768 + HAL1 LINE L1 12 123 -2384 600 287 61 13 chr6 126052478 126052708 -56362534 + HAL1 LINE L1 1677 1917 -590 268 247 108 28 chr6 126052750 126052871 -56362371 - MLT1I LTR MaLR -306 103 3 243 248 59 0 chr6 126052877 126052978 -56362264 + HAL1 LINE L1 2290 2396 -111 180 169 45 124 chr6 126053043 126053132 -56362110 + L2 LINE L2 2686 2767 -547 441 310 55 0 chr6 126053643 126053788 -56361454 - MIR3 SINE MIR -15 193 41 192 343 0 14 chr6 126055395 126055468 -56359774 + MER5A DNA MER1_type 96 167 -22 262 277 50 20 chr6 126056154 126056255 -56358987 - L2 LINE L2 0 3313 3210 351 281 88 9 chr6 126056787 126056901 -56358341 - L2 LINE L2 -1 3312 3190 319 87 0 0 chr6 126057057 126057103 -56358139 + L1PA5 LINE L1 6108 6153 -1 180 0 0 0 chr6 126057120 126057140 -56358102 + (A)n Simple_repeat Simple_repeat 1 20 0 409 308 132 38 chr6 126057738 126058108 -56357134 + L1MEc LINE L1 790 1194 -5202 566 257 169 18 chr6 126058374 126058853 -56356389 + L1MEc LINE L1 1193 1703 -4512 778 226 18 0 chr6 126058902 126059070 -56356172 + L1ME LINE L1 257 427 -5643 1152 111 11 5 chr6 126059118 126059307 -56355935 - L1PBa LINE L1 -4180 2683 2494 3341 194 9 0 chr6 126059312 126059963 -56355279 + L1PB1 LINE L1 3401 4057 -2089 5335 128 52 17 chr6 126059963 126061056 -56354186 + pTR5 LTR ERV1 743 2021 -417 328 235 0 0 chr6 126061060 126061141 -56354101 + LTR30 LTR ERV1 544 624 -98 1638 66 9 5 chr6 126061148 126061381 -56353861 + pTR5 LTR ERV1 172 392 -2046 450 173 13 0 chr6 126061382 126061457 -56353785 + L1PB1 LINE L1 4055 4130 -2016 5930 161 5 26 chr6 126061462 126062919 -56352323 + L1PB1 LINE L1 4088 5575 -576 1992 128 40 13 chr6 126062919 126063217 -56352025 - AluSx SINE Alu -6 306 1 5930 161 5 26 chr6 126063217 126063736 -56351506 + L1PB1 LINE L1 5575 6017 -134 1754 158 32 4 chr6 126063736 126064015 -56351227 + AluSx SINE Alu 1 287 -25 5930 161 5 26 chr6 126064015 126064147 -56351095 + L1PB1 LINE L1 6017 6150 -1 1057 264 36 50 chr6 126064186 126064687 -56350555 + L1ME LINE L1 456 949 -5121 522 98 33 33 chr6 126064665 126064757 -56350485 + L1PB1 LINE L1 5741 5832 -253 * 2405 279 68 20 chr6 126064778 126066349 -56348893 + L1ME LINE L1 990 2601 -3479 304 235 112 0 chr6 126066362 126066460 -56348782 + L1ME3A LINE L1 6034 6142 -28 206 398 0 0 chr6 126066614 126066707 -56348535 - L2 LINE L2 -785 2529 2437 2145 163 25 0 chr6 126069279 126069635 -56345607 + MLT1A1 LTR MaLR 1 365 0 299 337 87 28 chr6 126070090 126070342 -56344900 - L2 LINE L2 -346 2968 2702 432 129 0 0 chr6 126070342 126070404 -56344838 - MLT1A1 LTR MaLR -2 363 302 937 191 55 16 chr6 126070411 126070594 -56344648 - MLT1A1 LTR MaLR -175 190 1 300 287 56 37 chr6 126070615 126070723 -56344519 - L2 LINE L2 -613 2701 2592 718 257 104 14 chr6 126071502 126071724 -56343518 - MIR SINE MIR -1 261 20 432 306 149 24 chr6 126071751 126072133 -56343109 - L2 LINE L2 -1279 2035 1606 340 203 76 0 chr6 126073771 126073850 -56341392 - LTR33 LTR ERVL -14 507 423 426 338 82 30 chr6 126073946 126074177 -56341065 - LTR33 LTR ERVL -234 287 45 929 74 0 0 chr6 126074804 126074926 -56340316 - L1PA6 LINE L1 -5 6149 6028 936 337 65 55 chr6 126075413 126076330 -56338912 + ERVL LTR ERVL 1784 2710 -3054 3964 101 5 11 chr6 126076398 126076951 -56338291 + HSMAR1 DNA Mariner 738 1287 0 195 225 211 28 chr6 126077028 126077099 -56338143 + MER5C DNA MER1_type 1 84 -240 215 215 138 0 chr6 126077172 126077237 -56338005 + MER5C DNA MER1_type 251 324 0 466 356 48 27 chr6 126077239 126077640 -56337602 + ERVL LTR ERVL 2808 3252 -1906 2040 96 15 0 chr6 126077705 126077820 -56337422 + AluY SINE Alu 10 122 -192 387 0 0 0 chr6 126077820 126077863 -56337379 + (CA)n Simple_repeat Simple_repeat 2 44 0 2040 96 15 0 chr6 126077863 126078048 -56337194 + AluY SINE Alu 122 314 0 1326 313 91 83 chr6 126078118 126079749 -56335493 + ERVL LTR ERVL 3458 5101 -663 451 269 62 48 chr6 126080756 126080901 -56334341 - MIR SINE MIR -89 173 27 189 244 0 22 chr6 126081195 126081240 -56334002 + L2 LINE L2 3217 3260 -12 2162 263 140 19 chr6 126081377 126081816 -56333426 + L2 LINE L2 1208 1592 -1722 2143 149 86 8 chr6 126081816 126082213 -56333029 + MSTA LTR MaLR 1 428 0 2162 263 140 19 chr6 126082213 126082689 -56332553 + L2 LINE L2 1592 2234 -1080 245 282 8 105 chr6 126082679 126082803 -56332439 + L2 LINE L2 3197 3308 -5 * 346 239 162 34 chr6 126083072 126083257 -56331985 + MLT1G1 LTR MaLR 340 567 -28 30063 102 17 11 chr6 126083259 126086001 -56329241 - L1PA6 LINE L1 -2 6467 3743 2230 106 7 0 chr6 126086001 126086303 -56328939 - AluSc SINE Alu -5 304 1 30063 102 17 11 chr6 126086303 126089937 -56325305 - L1PA6 LINE L1 -2726 3743 4 726 269 208 14 chr6 126089943 126090511 -56324731 + L1MC4a LINE L1 5256 5933 -1875 915 271 13 23 chr6 126090704 126091014 -56324228 + L1MCb LINE L1 1 307 -5738 1280 242 119 8 chr6 126091059 126091572 -56323670 - L1M4 LINE L1 -3165 2981 2412 1840 184 55 7 chr6 126091690 126092142 -56323100 + L1MC3 LINE L1 5853 6326 -1459 366 157 0 0 chr6 126092147 126092217 -56323025 - L1MC3 LINE L1 -1171 6614 6545 350 167 0 0 chr6 126092196 126092268 -56322974 + L1MC3 LINE L1 6995 7066 -719 * 26 0 0 0 chr6 126092328 126092354 -56322888 + AT_rich Low_complexity Low_complexity 1 26 0 2665 179 35 67 chr6 126092385 126093119 -56322123 + L1MC3 LINE L1 7074 7784 -1 24 0 0 0 chr6 126093144 126093168 -56322074 + AT_rich Low_complexity Low_complexity 1 24 0 911 328 101 22 chr6 126093265 126093899 -56321343 + L2 LINE L2 675 1358 -1956 594 0 0 0 chr6 126093919 126093985 -56321257 + (TTTTA)n Simple_repeat Simple_repeat 5 70 0 906 302 126 25 chr6 126094240 126094455 -56320787 + L2 LINE L2 2830 3022 -291 1974 99 4 0 chr6 126094455 126094707 -56320535 + AluSg SINE Alu 42 294 -16 906 302 126 25 chr6 126094707 126094928 -56320314 + L2 LINE L2 3022 3310 -3 964 297 51 53 chr6 126094970 126095364 -56319878 - LTR16A LTR ERVL -1 449 57 919 349 29 22 chr6 126095537 126096130 -56319112 - HERV16 LTR ERVL -423 5341 4745 269 296 141 7 chr6 126096275 126096417 -56318825 - HERV16 LTR ERVL -1155 4609 4449 1453 196 23 34 chr6 126096420 126096772 -56318470 - MLT1A1 LTR MaLR -11 354 7 1308 304 39 11 chr6 126096792 126097319 -56317923 - HERV16 LTR ERVL -898 4396 3564 2524 60 0 29 chr6 126097327 126097643 -56317599 - AluY SINE Alu -4 307 1 1507 307 86 41 chr6 126097838 126099001 -56316241 - HERV16 LTR ERVL -1911 3085 2400 5815 124 12 8 chr6 126099054 126100137 -56315105 - L1PA16 LINE L1 -12 6154 5072 912 227 0 0 chr6 126100121 126100341 -56314901 + L1PA16 LINE L1 4856 5075 -1071 * 364 266 115 0 chr6 126100346 126100459 -56314783 - HERV16 LTR ERVL -3206 1790 1665 11648 188 24 44 chr6 126100478 126103906 -56311336 - L1MA4A LINE L1 -11 6994 3496 10135 74 6 1 chr6 126103906 126106070 -56309172 - L1PA7 LINE L1 0 6154 3997 739 136 0 0 chr6 126106070 126106180 -56309062 + 5S rRNA rRNA 6 115 -6 11648 188 24 44 chr6 126106180 126107156 -56308086 - L1MA4A LINE L1 -3507 3498 2635 8965 155 26 10 chr6 126107159 126108834 -56306408 - L1MA4A LINE L1 -4057 2792 1091 384 204 45 11 chr6 126108877 126108965 -56306277 - LTR49-int LTR ERV1 -6240 91 1 417 74 0 0 chr6 126108973 126109027 -56306215 - LTR49 LTR ERV1 -6 589 536 1292 195 16 83 chr6 126109245 126109620 -56305622 + MLT1A2 LTR MaLR 18 367 -7 467 293 47 4 chr6 126109742 126109974 -56305268 - HERV16 LTR ERVL -3645 1351 1110 1831 193 45 35 chr6 126110203 126110665 -56304577 - MLT1C LTR MaLR 0 467 1 516 296 31 53 chr6 126110886 126111112 -56304130 + MIR SINE MIR 18 238 -24 4578 103 3 6 chr6 126111145 126111836 -56303406 - L1MA2 LINE L1 0 6304 5616 665 177 16 0 chr6 126112216 126112340 -56302902 - MER96 DNA MER1_type? 0 175 50 471 213 134 67 chr6 126112589 126112753 -56302489 + MER58B DNA MER1_type 167 341 0 21 0 0 0 chr6 126113678 126113699 -56301543 + AT_rich Low_complexity Low_complexity 1 21 0 389 345 25 15 chr6 126113934 126114131 -56301111 + L1ME4a LINE L1 5715 5913 -208 1857 152 119 74 chr6 126114144 126114330 -56300912 + MLT1C LTR MaLR 1 177 -328 1707 172 25 0 chr6 126114330 126114609 -56300633 + AluJb SINE Alu 5 290 -22 1857 152 119 74 chr6 126114609 126114877 -56300365 + MLT1C LTR MaLR 177 505 0 303 28 0 0 chr6 126114909 126114945 -56300297 + (TG)n Simple_repeat Simple_repeat 1 36 0 424 0 36 0 chr6 126115041 126115097 -56300145 + (TA)n Simple_repeat Simple_repeat 2 59 0 5420 150 6 9 chr6 126115105 126115461 -56299781 - L1PB2 LINE L1 -18 6133 5778 2199 92 0 43 chr6 126115461 126115786 -56299456 - AluY SINE Alu 0 311 1 5420 150 6 9 chr6 126115786 126116929 -56298313 - L1PB2 LINE L1 -373 5778 4639 365 343 34 17 chr6 126116929 126117104 -56298138 + L2 LINE L2 3136 3313 0 359 345 49 31 chr6 126118356 126118582 -56296660 + L2 LINE L2 2999 3228 -44 2099 148 43 14 chr6 126119366 126119718 -56295524 + THE1B LTR MaLR 1 362 -2 2956 72 0 0 chr6 126119720 126120120 -56295122 + THE1B-int LTR MaLR 1 400 -1180 590 186 135 32 chr6 126120152 126120308 -56294934 + MLT1E2 LTR MaLR 217 388 -238 8118 142 41 21 chr6 126120311 126121808 -56293434 + Tigger2 DNA MER2_type 1 1527 -1191 337 165 24 28 chr6 126121808 126122059 -56293183 + (TA)n Simple_repeat Simple_repeat 1 249 0 7161 136 19 3 chr6 126122059 126123236 -56292006 + Tigger2 DNA MER2_type 1524 2718 0 400 229 219 65 chr6 126123237 126123438 -56291804 + MLT1E2 LTR MaLR 423 654 0 619 223 57 11 chr6 126123740 126123915 -56291327 + MLT1K LTR MaLR 398 580 -8 267 286 238 16 chr6 126124188 126124314 -56290928 + L2 LINE L2 3117 3270 -2 206 198 83 115 chr6 126124601 126124697 -56290545 - MIR SINE MIR -76 132 40 7275 56 1 4 chr6 126125839 126126832 -56288410 - L1PA5 LINE L1 -754 5392 4403 5527 68 20 7 chr6 126126832 126127562 -56287680 + L1PA5 LINE L1 5415 6154 0 2376 114 39 3 chr6 126128276 126128634 -56286608 + THE1C LTR MaLR 1 371 -4 834 218 12 0 chr6 126128657 126128827 -56286415 - MER45A DNA AcHobo -1 177 6 820 242 22 0 chr6 126129060 126129242 -56286000 + MER5A DNA MER1_type 1 186 -3 263 314 107 21 chr6 126129248 126129490 -56285752 - L2 LINE L2 -705 2609 2347 30 69 0 0 chr6 126129865 126129923 -56285319 + AT_rich Low_complexity Low_complexity 1 58 0 1526 209 117 28 chr6 126129927 126130518 -56284724 + L1ME2 LINE L1 5219 5862 -302 3522 220 81 52 chr6 126130525 126131928 -56283314 + L1MD1 LINE L1 284 1878 -4662 7898 223 39 13 chr6 126131936 126135175 -56280067 + L1MD1 LINE L1 3014 6168 -2221 387 0 0 0 chr6 126135175 126135218 -56280024 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5444 57 7 0 chr6 126135218 126135903 -56279339 - L1PA8 LINE L1 -17 6155 5466 7898 223 39 13 chr6 126135903 126136194 -56279048 + L1MD1 LINE L1 6167 8388 -1 433 119 0 0 chr6 126136196 126136263 -56278979 + L1ME1 LINE L1 5862 5928 -256 538 251 53 16 chr6 126136265 126136452 -56278790 + L1ME1 LINE L1 5962 6155 -11 354 211 73 9 chr6 126136521 126136630 -56278612 - Charlie7 DNA MER1_type -266 2346 2231 390 219 126 33 chr6 126136671 126136822 -56278420 - Charlie7 DNA MER1_type -2121 491 327 3564 127 12 13 chr6 126136977 126137574 -56277668 - L1P LINE L1 -5540 606 11 1871 167 0 0 chr6 126137631 126137912 -56277330 - AluJb SINE Alu -12 300 20 321 268 0 0 chr6 126137917 126137988 -56277254 - MER5A DNA MER1_type 0 189 119 219 167 0 0 chr6 126138007 126138049 -56277193 + (CA)n Simple_repeat Simple_repeat 1 42 0 583 185 0 19 chr6 126138052 126138160 -56277082 - MER5A DNA MER1_type -83 106 1 31408 37 13 1 chr6 126138294 126143203 -56272039 + L1P LINE L1 1 5033 -1113 2184 107 3 3 chr6 126143334 126143644 -56271598 - AluSg SINE Alu 0 310 1 227 239 97 35 chr6 126143747 126143860 -56271382 - Charlie7 DNA MER1_type -2442 170 51 1341 92 0 5 chr6 126143860 126144044 -56271198 - AluY SINE Alu -7 304 122 257 0 30 0 chr6 126144044 126144077 -56271165 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6602 17 0 0 chr6 126144077 126144861 -56270381 - L1PA2 LINE L1 -16 6139 5356 5661 28 1 0 chr6 126144857 126145577 -56269665 + L1PA2 LINE L1 4647 5367 -779 * 1104 68 0 0 chr6 126145577 126145709 -56269533 - AluY SINE Alu -179 132 1 187 240 20 40 chr6 126146151 126146201 -56269041 - MIR3 SINE MIR 0 208 160 24 53 0 0 chr6 126147082 126147120 -56268122 + AT_rich Low_complexity Low_complexity 1 38 0 35080 60 3 5 chr6 126147120 126152704 -56262538 - L1PA5 LINE L1 0 6154 584 5282 151 6 11 chr6 126152838 126153176 -56262066 - L1PB2 LINE L1 -40 6111 5773 2146 96 0 46 chr6 126153176 126153500 -56261742 - AluY SINE Alu -2 309 1 5282 151 6 11 chr6 126153500 126154643 -56260599 - L1PB2 LINE L1 -378 5773 4639 354 343 34 17 chr6 126154643 126154818 -56260424 + L2 LINE L2 3136 3313 0 359 345 49 31 chr6 126156068 126156294 -56258948 + L2 LINE L2 2999 3228 -44 2099 148 43 14 chr6 126157078 126157430 -56257812 + THE1B LTR MaLR 1 362 -2 41003 30 21 1 chr6 126157430 126163450 -56251792 + L1PA2 LINE L1 1 6144 -11 258 81 0 0 chr6 126163461 126163498 -56251744 + (A)n Simple_repeat Simple_repeat 1 37 0 2971 70 0 0 chr6 126163502 126163902 -56251340 + THE1B-int LTR MaLR 1 400 -1180 590 186 135 32 chr6 126163934 126164090 -56251152 + MLT1E2 LTR MaLR 217 388 -238 8048 143 43 21 chr6 126164093 126165587 -56249655 + Tigger2 DNA MER2_type 1 1527 -1191 420 191 16 9 chr6 126165587 126165913 -56249329 + (TA)n Simple_repeat Simple_repeat 1 328 0 3445 130 18 2 chr6 126165913 126166481 -56248761 + Tigger2 DNA MER2_type 1524 2100 -618 7508 10 5 2 chr6 126166586 126167613 -56247629 + L1HS LINE L1 5123 6154 -1 273 75 0 0 chr6 126167618 126167658 -56247584 + (A)n Simple_repeat Simple_repeat 1 40 0 189 0 0 0 chr6 126167727 126167748 -56247494 + (TTA)n Simple_repeat Simple_repeat 1 21 0 4224 116 9 9 chr6 126167840 126168511 -56246731 + L1MA3 LINE L1 5635 6305 0 2711 164 6 4 chr6 126169926 126170419 -56244823 + L1PA8 LINE L1 2 495 -5380 24769 144 10 19 chr6 126170457 126176195 -56239047 + L1PA8 LINE L1 800 6487 0 248 355 62 24 chr6 126176323 126176534 -56238708 - L2 LINE L2 -1205 2109 1891 229 287 148 0 chr6 126176806 126176914 -56238328 + L2 LINE L2 3149 3272 0 229 145 32 0 chr6 126178421 126178483 -56236759 + (TA)n Simple_repeat Simple_repeat 1 64 0 24 0 0 0 chr6 126179007 126179031 -56236211 + AT_rich Low_complexity Low_complexity 1 24 0 798 249 17 0 chr6 126179812 126179989 -56235253 - MIR SINE MIR -13 249 70 1428 255 22 14 chr6 126180399 126180431 -56234811 - MLT1H1 LTR MaLR -2 553 523 1986 136 71 0 chr6 126180431 126180755 -56234487 + MER7A DNA MER2_type 2 346 0 1428 255 22 14 chr6 126180755 126181087 -56234155 - MLT1H1 LTR MaLR -32 523 186 180 0 0 0 chr6 126181615 126181635 -56233607 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6606 80 9 1 chr6 126181638 126183319 -56231923 - L1PA7 LINE L1 -2 6152 4462 6527 75 1 0 chr6 126183321 126184223 -56231019 + L1PA7 LINE L1 3541 4443 -1703 306 215 15 0 chr6 126184438 126184503 -56230739 + MER58 DNA MER1_type 2355 2420 0 317 191 131 0 chr6 126184517 126184601 -56230641 + MLT1J2 LTR MaLR 73 167 -283 273 299 72 42 chr6 126184688 126184855 -56230387 + MLT1J2 LTR MaLR 256 427 -23 315 0 0 0 chr6 126186240 126186275 -56228967 + (TG)n Simple_repeat Simple_repeat 2 36 0 287 49 24 0 chr6 126186688 126186729 -56228513 + (TC)n Simple_repeat Simple_repeat 2 43 0 240 262 0 24 chr6 126186729 126186813 -56228429 - L1MC4 LINE L1 -1349 6693 6612 270 0 0 0 chr6 126186819 126186849 -56228393 + (TA)n Simple_repeat Simple_repeat 2 31 0 356 346 144 32 chr6 126186849 126187259 -56227983 + HAL1 LINE L1 28 483 -2024 32 43 0 0 chr6 126187558 126187604 -56227638 + AT_rich Low_complexity Low_complexity 1 46 0 348 344 42 5 chr6 126188273 126188465 -56226777 + ERVL LTR ERVL 3252 3450 -2314 257 275 25 25 chr6 126188519 126188599 -56226643 + L2 LINE L2 3230 3309 -4 21 36 0 0 chr6 126188620 126188648 -56226594 + AT_rich Low_complexity Low_complexity 1 28 0 239 302 175 16 chr6 126189385 126189511 -56225731 - MIR SINE MIR -34 228 83 26 30 0 0 chr6 126189554 126189587 -56225655 + AT_rich Low_complexity Low_complexity 1 33 0 319 243 6 0 chr6 126189911 126190005 -56225237 + MLT1H LTR MaLR 481 549 0 5449 105 50 4 chr6 126190103 126191023 -56224219 + L1PA11 LINE L1 5205 6173 -1 213 284 0 14 chr6 126191069 126191143 -56224099 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 371 289 107 8 chr6 126191156 126191277 -56223965 - L2 LINE L2 -14 3258 3126 384 75 0 0 chr6 126191411 126191464 -56223778 - MLT2A1 LTR ERVL -2 442 390 254 116 93 12 chr6 126191472 126191558 -56223684 + (TA)n Simple_repeat Simple_repeat 1 93 0 316 211 33 33 chr6 126191567 126191657 -56223585 + L1MC4 LINE L1 6614 6703 -1339 242 264 23 0 chr6 126191673 126191760 -56223482 + L1MC4 LINE L1 6614 6702 -1340 225 256 47 0 chr6 126191683 126191769 -56223473 - L1MC4 LINE L1 -1339 6703 6614 * 207 204 0 0 chr6 126191771 126191815 -56223427 + (TA)n Simple_repeat Simple_repeat 2 45 0 1007 25 0 0 chr6 126191828 126191949 -56223293 - MLT2A1 LTR ERVL -41 403 283 1776 75 17 0 chr6 126192254 126192494 -56222748 - MLT2A1 LTR ERVL -200 244 1 197 401 93 12 chr6 126192533 126192780 -56222462 - L2 LINE L2 -349 2965 2699 1216 226 22 4 chr6 126193658 126193933 -56221309 + AluJb SINE Alu 5 284 -18 33 0 0 0 chr6 126193934 126193967 -56221275 + AT_rich Low_complexity Low_complexity 1 33 0 507 274 55 23 chr6 126194105 126194324 -56220918 - MER102b DNA MER1_type -12 329 104 682 222 46 21 chr6 126194606 126194800 -56220442 + MER3 DNA MER1_type 11 209 0 904 180 51 6 chr6 126194818 126194996 -56220246 - MER5A DNA MER1_type -2 187 2 294 143 0 0 chr6 126195118 126195167 -56220075 + (CA)n Simple_repeat Simple_repeat 1 49 0 476 254 111 82 chr6 126196229 126196508 -56218734 + MLT1H LTR MaLR 256 542 -7 2164 61 0 36 chr6 126196715 126197024 -56218218 - AluY SINE Alu 0 314 16 556 316 36 0 chr6 126199544 126199712 -56215530 + MIR SINE MIR 47 220 -42 214 222 0 0 chr6 126199782 126199827 -56215415 - L2 LINE L2 -4 3309 3265 234 275 75 12 chr6 126200342 126200422 -56214820 + MIR SINE MIR 96 180 -82 315 251 55 86 chr6 126201170 126201333 -56213909 - MLT1H LTR MaLR -10 539 382 744 248 59 31 chr6 126201460 126201714 -56213528 - MLT1H LTR MaLR -266 283 23 834 230 63 0 chr6 126202798 126202972 -56212270 + MER5A DNA MER1_type 3 187 -2 259 96 39 0 chr6 126203146 126203198 -56212044 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 1670 183 3 30 chr6 126203617 126203918 -56211324 + AluJo SINE Alu 5 297 -15 510 278 17 0 chr6 126203958 126204134 -56211108 + Charlie7 DNA MER1_type 1 179 -2433 1869 139 19 16 chr6 126204167 126204490 -56210752 - THE1C LTR MaLR 0 375 52 1056 109 0 0 chr6 126204490 126204637 -56210605 - THE1-int LTR MaLR -644 936 790 433 37 0 0 chr6 126204637 126204691 -56210551 - THE1C LTR MaLR -321 54 1 9939 111 43 38 chr6 126204691 126206262 -56208980 - THE1C-int LTR MaLR 0 1580 1 2397 130 11 16 chr6 126206262 126206639 -56208603 - THE1C LTR MaLR 0 375 1 230 302 0 0 chr6 126206649 126206712 -56208530 + Charlie7 DNA MER1_type 241 303 -2309 1651 242 134 25 chr6 126206818 126208253 -56206989 + Charlie7 DNA MER1_type 531 2137 -475 3443 147 24 2 chr6 126208254 126209111 -56206131 + L1PA16 LINE L1 4927 5795 -371 2239 126 13 38 chr6 126209111 126209484 -56205758 - THE1B LTR MaLR 0 364 1 6804 88 3 1 chr6 126209484 126210420 -56204822 - THE1B-int LTR MaLR 0 1580 643 744 248 59 31 chr6 126210588 126210842 -56204400 - MLT1H LTR MaLR -266 283 23 834 230 63 0 chr6 126211926 126212100 -56203142 + MER5A DNA MER1_type 3 187 -2 259 96 39 0 chr6 126212274 126212326 -56202916 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 1670 183 3 30 chr6 126212745 126213046 -56202196 + AluJo SINE Alu 5 297 -15 490 283 17 6 chr6 126213086 126213263 -56201979 + Charlie7 DNA MER1_type 1 179 -2433 1846 142 19 16 chr6 126213296 126213619 -56201623 - THE1C LTR MaLR 0 375 52 1035 116 0 0 chr6 126213619 126213766 -56201476 - THE1-int LTR MaLR -644 936 790 433 37 0 0 chr6 126213766 126213820 -56201422 - THE1C LTR MaLR -321 54 1 12065 82 7 1 chr6 126213820 126215391 -56199851 - THE1B-int LTR MaLR 0 1580 1 2117 132 22 40 chr6 126215391 126215762 -56199480 - THE1B LTR MaLR 0 364 1 2174 143 14 3 chr6 126215762 126216132 -56199110 + L1PA16 LINE L1 5791 6164 -2 470 241 195 0 chr6 126216154 126216328 -56198914 + Charlie7 DNA MER1_type 2128 2335 -277 1421 206 36 20 chr6 126216382 126216475 -56198767 + AluJb SINE Alu 1 91 -221 2094 130 130 16 chr6 126216475 126216859 -56198383 - MSTA LTR MaLR 0 428 1 1421 206 36 20 chr6 126216859 126217066 -56198176 + AluJb SINE Alu 91 306 -6 23 54 0 0 chr6 126217079 126217116 -56198126 + AT_rich Low_complexity Low_complexity 1 37 0 893 231 143 24 chr6 126218432 126218761 -56196481 + L1ME3A LINE L1 5735 6102 -68 328 360 40 7 chr6 126219645 126219795 -56195447 + L2 LINE L2 3117 3271 -1 284 384 6 38 chr6 126219832 126219991 -56195251 + MIR SINE MIR 53 206 -56 642 288 33 19 chr6 126220152 126220367 -56194875 + L2 LINE L2 3095 3312 -1 310 289 46 23 chr6 126221751 126221924 -56193318 + HsTC2 DNA Tc2 220 396 -1502 334 281 30 12 chr6 126221926 126222090 -56193152 + L1ME1 LINE L1 5102 5268 -878 1094 216 53 53 chr6 126222105 126222185 -56193057 + L1ME1 LINE L1 5327 5405 -761 2266 99 0 25 chr6 126222185 126222525 -56192717 + AluSg SINE Alu 1 310 0 1094 216 53 53 chr6 126222525 126222815 -56192427 + L1ME1 LINE L1 5405 5728 -438 1734 205 51 31 chr6 126222820 126223268 -56191974 - MLT1C LTR MaLR -2 465 9 1312 216 45 16 chr6 126223275 126223679 -56191563 + L1ME1 LINE L1 5726 6302 -32 771 189 0 0 chr6 126223684 126223811 -56191431 + FLAM_C SINE Alu 1 127 -16 405 359 4 8 chr6 126223884 126224118 -56191124 + HsTC2 DNA Tc2 657 889 -1009 566 187 41 29 chr6 126224315 126224486 -56190756 + L1MA7 LINE L1 6116 6288 -3 1430 166 18 46 chr6 126224611 126224894 -56190348 - AluJo SINE Alu -18 294 20 1371 272 76 22 chr6 126225574 126226128 -56189114 + L2 LINE L2 2487 3059 -254 275 203 0 0 chr6 126226147 126226206 -56189036 + L1MA7 LINE L1 6169 6227 -64 898 293 118 23 chr6 126226280 126226679 -56188563 - LTR16A LTR ERVL -13 437 1 279 261 149 45 chr6 126226692 126226826 -56188416 + L2 LINE L2 3161 3308 -5 263 198 49 49 chr6 126227779 126227860 -56187382 + MLT1L LTR MaLR 1 81 -534 21 36 0 0 chr6 126229706 126229734 -56185508 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr6 126229978 126230002 -56185240 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr6 126230387 126230408 -56184834 + AT_rich Low_complexity Low_complexity 1 21 0 1960 178 14 6 chr6 126230544 126230910 -56184332 + MLT2D LTR ERVL 1 369 -45 332 321 33 19 chr6 126231387 126231548 -56183694 - MIR SINE MIR -57 151 14 180 0 0 0 chr6 126233975 126233995 -56181247 + (A)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chr6 126234024 126234060 -56181182 + AT_rich Low_complexity Low_complexity 1 36 0 349 301 20 52 chr6 126234101 126234254 -56180988 + L2 LINE L2 3165 3312 -1 9302 186 43 45 chr6 126234786 126235924 -56179318 + L1MC3 LINE L1 5426 6564 -1221 7728 119 20 39 chr6 126235924 126237248 -56177994 + HSMAR2 DNA Mariner 2 1301 -1 9302 186 43 45 chr6 126237248 126238090 -56177152 + L1MC3 LINE L1 6564 7405 -380 1977 144 24 0 chr6 126238090 126238381 -56176861 + AluSx SINE Alu 1 298 -14 9302 186 43 45 chr6 126238381 126238761 -56176481 + L1MC3 LINE L1 7405 7784 -1 1006 240 19 19 chr6 126238865 126239132 -56176110 + MLT2B1 LTR ERVL 1 267 -253 19252 108 14 8 chr6 126239281 126244916 -56170326 + L1PA7 LINE L1 1150 7591 -1 269 241 172 46 chr6 126245025 126245199 -56170043 - L2 LINE L2 0 3313 3118 213 39 0 0 chr6 126245246 126245272 -56169970 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 438 311 18 32 chr6 126245272 126245491 -56169751 + HAL1 LINE L1 2287 2502 -5 443 304 68 46 chr6 126245492 126245729 -56169513 + L1ME LINE L1 3205 3446 -2700 39293 51 26 1 chr6 126245735 126251739 -56163503 + L1PA3 LINE L1 3 6155 0 356 292 17 17 chr6 126251755 126251933 -56163309 + L1ME LINE L1 5354 5531 -639 21 0 0 0 chr6 126252525 126252546 -56162696 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr6 126252692 126252718 -56162524 + (CA)n Simple_repeat Simple_repeat 2 27 0 451 248 31 0 chr6 126253218 126253347 -56161895 - MER103 DNA DNA -7 159 27 180 97 0 0 chr6 126253420 126253451 -56161791 + (T)n Simple_repeat Simple_repeat 1 31 0 2034 141 131 11 chr6 126253514 126253896 -56161346 + MSTA LTR MaLR 1 428 0 189 147 0 0 chr6 126254576 126254610 -56160632 + (TC)n Simple_repeat Simple_repeat 1 34 0 840 230 129 25 chr6 126254616 126254942 -56160300 - Tigger5 DNA MER2_type 0 2323 7 1076 197 92 36 chr6 126255188 126255571 -56159671 - MLT2B2 LTR ERVL 0 515 5 24 0 0 0 chr6 126255900 126255924 -56159318 + AT_rich Low_complexity Low_complexity 1 24 0 871 151 0 0 chr6 126255965 126256084 -56159158 + AluSq/x SINE Alu 1 119 -194 216 0 0 0 chr6 126256084 126256108 -56159134 + (TA)n Simple_repeat Simple_repeat 1 24 0 221 163 0 0 chr6 126256232 126256275 -56158967 + (TA)n Simple_repeat Simple_repeat 1 43 0 897 176 73 0 chr6 126256275 126256440 -56158802 + AluSg/x SINE Alu 134 310 0 418 130 0 0 chr6 126256693 126256762 -56158480 - Alu SINE Alu -10 302 234 426 263 16 67 chr6 126256962 126257274 -56157968 - L1MC5 LINE L1 -63 7898 7603 330 270 108 75 chr6 126257348 126257589 -56157653 - L1MC/D LINE L1 -840 5519 5271 277 54 0 0 chr6 126257589 126257626 -56157616 - MADE1 DNA Mariner 0 80 44 37884 39 27 1 chr6 126257727 126262645 -56152597 - L1P LINE L1 -1104 5042 1 887 262 80 21 chr6 126262651 126263128 -56152114 - L1MC/D LINE L1 -2054 4092 3588 1361 232 30 52 chr6 126264328 126264472 -56150770 - L1ME1 LINE L1 -1 6165 6019 207 0 0 0 chr6 126264472 126264495 -56150747 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1361 232 30 52 chr6 126264495 126264517 -56150725 - L1ME1 LINE L1 -147 6019 5998 14468 132 29 13 chr6 126264517 126265433 -56149809 - Tigger1 DNA MER2_type 0 2418 1519 2416 76 0 19 chr6 126265433 126265750 -56149492 - AluY SINE Alu 0 311 1 14468 132 29 13 chr6 126265750 126267212 -56148030 - Tigger1 DNA MER2_type -899 1519 1 1361 232 30 52 chr6 126267212 126267505 -56147737 - L1ME1 LINE L1 -168 5998 5715 311 339 9 9 chr6 126267838 126267953 -56147289 + L2 LINE L2 3199 3313 0 188 184 20 0 chr6 126268038 126268087 -56147155 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 5817 207 128 15 chr6 126268570 126270457 -56144785 - Zaphod DNA AcHobo -15 4016 1918 24 0 0 0 chr6 126270478 126270502 -56144740 + GC_rich Low_complexity Low_complexity 1 24 0 764 203 14 14 chr6 126270518 126270661 -56144581 - AluJb SINE Alu -34 278 136 419 293 17 50 chr6 126270662 126270901 -56144341 - Zaphod DNA AcHobo -2101 1930 1700 503 286 110 85 chr6 126270903 126271221 -56144021 + L2 LINE L2 2942 3267 -5 965 201 27 0 chr6 126271324 126271508 -56143734 + MER5A DNA MER1_type 1 189 0 195 100 0 0 chr6 126272630 126272660 -56142582 + (CA)n Simple_repeat Simple_repeat 2 31 0 26 0 0 0 chr6 126272833 126272859 -56142383 + AT_rich Low_complexity Low_complexity 1 26 0 211 349 48 16 chr6 126273023 126273149 -56142093 + MIR SINE MIR 17 146 -62 2313 68 0 4 chr6 126273397 126273705 -56141537 + AluSg SINE Alu 1 307 0 2405 133 36 19 chr6 126275691 126276112 -56139130 + MSTA LTR MaLR 1 428 0 316 185 0 0 chr6 126276126 126276180 -56139062 - THE1-int LTR MaLR -569 1011 958 * 5026 175 13 1 chr6 126276171 126277046 -56138196 + MSTA-int LTR MaLR 767 1651 0 2138 119 38 74 chr6 126277046 126277244 -56137998 + MSTA LTR MaLR 1 205 -223 2862 114 11 0 chr6 126277244 126277681 -56137561 + L1PA14 LINE L1 5717 6158 -3 2138 119 38 74 chr6 126277681 126277926 -56137316 + MSTA LTR MaLR 205 428 0 307 350 20 25 chr6 126278310 126278507 -56136735 + HAL1 LINE L1 836 1031 -1476 1605 185 0 35 chr6 126278508 126278822 -56136420 + AluSx SINE Alu 1 303 -9 444 264 14 27 chr6 126278860 126279015 -56136227 + LTR16A LTR ERVL 1 152 -298 725 284 25 8 chr6 126279094 126279337 -56135905 - LTR16A LTR ERVL -18 432 186 1053 298 53 10 chr6 126279348 126280014 -56135228 + HERV16 LTR ERVL 1255 2016 -2980 922 304 79 32 chr6 126280068 126280687 -56134555 + HERV16 LTR ERVL 2169 2841 -2813 309 250 6 151 chr6 126280732 126280904 -56134338 + HERV16 LTR ERVL 3047 3193 -2461 943 230 95 69 chr6 126280906 126281285 -56133957 + MSTD LTR MaLR 6 394 -2 635 362 13 0 chr6 126281305 126281612 -56133630 + HERV16 LTR ERVL 3243 3553 -2211 564 368 45 11 chr6 126282041 126282416 -56132826 + HERV16 LTR ERVL 4525 4912 -852 548 200 46 0 chr6 126282418 126282577 -56132665 - MLT1A1 LTR MaLR 0 457 199 333 184 16 128 chr6 126282608 126282733 -56132509 - MSTD LTR MaLR -172 193 83 * 626 219 3 134 chr6 126282728 126283085 -56132157 - TAR1 Satellite telomeric -1789 322 13 * 1715 195 4 52 chr6 126282894 126283372 -56131870 - LTR60 LTR ERV1 -21 565 111 474 255 0 0 chr6 126283415 126283521 -56131721 - LTR60 LTR ERV1 -480 106 1 430 190 0 0 chr6 126283521 126283600 -56131642 - MSTD LTR MaLR -317 79 1 256 330 21 63 chr6 126283617 126283808 -56131434 + HERV16 LTR ERVL 4928 5110 -654 381 248 21 78 chr6 126284357 126284667 -56130575 + LTR16A LTR ERVL 93 441 -9 1914 209 128 84 chr6 126284675 126285446 -56129796 + MER21B LTR ERV1 1 805 -58 1580 198 71 24 chr6 126285446 126285871 -56129371 + LTR56 LTR ERV1 1 445 0 316 306 84 65 chr6 126286440 126286701 -56128541 + MER4B-int LTR ERV1 430 695 -6063 702 112 9 3 chr6 126287410 126287642 -56127600 + AluSp SINE Alu 1 293 -20 1081 248 50 3 chr6 126289087 126289390 -56125852 + MLT1B LTR MaLR 74 390 0 433 319 17 0 chr6 126290116 126290232 -56125010 + MIR SINE MIR 5 122 -140 2188 143 69 0 chr6 126290233 126290625 -56124617 + MSTA LTR MaLR 1 419 -9 418 167 12 24 chr6 126290643 126290727 -56124515 + MIR SINE MIR 132 214 -48 339 326 54 0 chr6 126290791 126290920 -56124322 + L1ME4a LINE L1 5682 5817 -1991 14743 152 36 11 chr6 126290949 126295291 -56119951 + L1MA3 LINE L1 16 4252 -3472 2088 184 76 0 chr6 126295291 126295688 -56119554 + MSTA LTR MaLR 2 428 0 14743 152 36 11 chr6 126295688 126296197 -56119045 + L1MA3 LINE L1 4252 4747 -2977 2352 112 0 3 chr6 126296197 126296502 -56118740 + AluSc SINE Alu 1 304 -5 14743 152 36 11 chr6 126296502 126298923 -56116319 + L1MA3 LINE L1 4747 7452 -272 1967 118 9 15 chr6 126298906 126299244 -56115998 + L1MA3 LINE L1 5969 6304 -1 * 315 224 12 24 chr6 126299539 126299624 -56115618 + L1ME4a LINE L1 5966 6049 -72 337 344 0 2 chr6 126300724 126300851 -56114391 + MIR SINE MIR 32 156 -61 186 351 0 0 chr6 126301252 126301309 -56113933 + L2 LINE L2 3251 3307 -6 1281 156 34 22 chr6 126301862 126302131 -56113111 - L1MA9 LINE L1 0 6312 6041 292 238 98 78 chr6 126302331 126302468 -56112774 + MIR SINE MIR 63 207 -55 2323 72 3 0 chr6 126302468 126302758 -56112484 - AluSg SINE Alu -19 291 1 292 238 98 78 chr6 126302758 126302813 -56112429 + MIR SINE MIR 207 259 -3 5076 213 47 59 chr6 126303081 126304682 -56110560 + MER45R DNA AcHobo 1 1581 0 2262 83 3 0 chr6 126304868 126305170 -56110072 + AluY SINE Alu 1 303 -8 211 444 13 0 chr6 126305203 126305356 -56109886 + L2 LINE L2 3101 3255 -17 264 30 0 0 chr6 126306792 126306825 -56108417 + (GA)n Simple_repeat Simple_repeat 2 34 0 733 321 80 35 chr6 126308925 126309377 -56105865 + L2 LINE L2 1867 2338 -976 1834 232 18 16 chr6 126309697 126310197 -56105045 - Charlie1b DNA MER1_type -18 505 5 751 193 0 15 chr6 126312586 126312721 -56102521 + FLAM_C SINE Alu 1 133 -10 20524 32 0 0 chr6 126313600 126316848 -56098394 + L1PA2 LINE L1 2903 6150 -5 916 281 121 37 chr6 126316853 126318408 -56096834 + L1ME LINE L1 4077 5771 -399 2028 131 25 33 chr6 126318423 126318783 -56096459 + THE1B LTR MaLR 1 357 -7 802 11 0 0 chr6 126319041 126319136 -56096106 + L1PA2 LINE L1 6061 6155 0 619 229 0 8 chr6 126319160 126319278 -56095964 + FLAM_A SINE Alu 1 117 -16 1791 154 0 0 chr6 126319290 126319582 -56095660 + MSTA LTR MaLR 137 428 0 1873 168 6 6 chr6 126319583 126319940 -56095302 - L1MA4 LINE L1 -40 6260 5904 708 290 62 53 chr6 126319945 126320591 -56094651 - L1ME LINE L1 -432 5730 5091 1918 110 0 15 chr6 126320591 126320864 -56094378 + AluSg SINE Alu 36 304 -6 708 290 62 53 chr6 126320864 126321966 -56093276 - L1ME LINE L1 -1071 5091 3972 406 81 14 40 chr6 126321972 126322046 -56093196 - L1PA8 LINE L1 0 6172 6101 211 329 0 0 chr6 126322048 126322121 -56093121 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 268 211 122 41 chr6 126322154 126322277 -56092965 - L1ME LINE L1 -2213 3933 3801 1581 149 99 42 chr6 126322308 126322663 -56092579 + THE1C LTR MaLR 1 375 0 343 172 16 0 chr6 126322887 126322951 -56092291 + MLT1L LTR MaLR 7 71 -544 537 96 106 29 chr6 126323474 126323578 -56091664 + MSTD LTR MaLR 2 113 -283 283 100 0 0 chr6 126323691 126323731 -56091511 - MSTD LTR MaLR -258 138 99 * 801 198 39 32 chr6 126323708 126323967 -56091275 + MSTD LTR MaLR 102 390 -6 318 226 0 75 chr6 126324802 126324895 -56090347 - MIR3 SINE MIR -17 191 106 1171 141 126 22 chr6 126325415 126325685 -56089557 - L1MA8 LINE L1 -5 6286 5989 21 0 0 0 chr6 126329264 126329285 -56085957 + AT_rich Low_complexity Low_complexity 1 21 0 216 97 0 0 chr6 126331332 126331363 -56083879 + (TC)n Simple_repeat Simple_repeat 1 31 0 365 337 26 42 chr6 126334749 126334939 -56080303 + MIR SINE MIR 20 206 -56 395 265 103 101 chr6 126336418 126337078 -56078164 + L1M2 LINE L1 449 1373 -5476 456 19 0 0 chr6 126337366 126337419 -56077823 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1371 143 71 19 chr6 126337442 126337750 -56077492 + MER33 DNA MER1_type 1 324 0 418 174 36 22 chr6 126338229 126338367 -56076875 + CT-rich Low_complexity Low_complexity 2 141 0 185 94 31 0 chr6 126339287 126339319 -56075923 + (TA)n Simple_repeat Simple_repeat 2 34 0 236 28 56 0 chr6 126339735 126339771 -56075471 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 296 238 51 51 chr6 126339797 126339955 -56075287 - MIR SINE MIR -52 210 54 720 295 68 0 chr6 126340508 126340745 -56074497 - MIR SINE MIR 0 262 10 240 303 208 11 chr6 126340889 126341067 -56074175 - L3b LINE CR1 -27 1556 1344 225 154 0 0 chr6 126342938 126342977 -56072265 + (CA)n Simple_repeat Simple_repeat 2 40 0 302 169 45 0 chr6 126343478 126343567 -56071675 + (TA)n Simple_repeat Simple_repeat 1 93 0 29 28 0 0 chr6 126345302 126345338 -56069904 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr6 126346119 126346161 -56069081 + AT_rich Low_complexity Low_complexity 1 42 0 708 320 78 44 chr6 126346305 126346714 -56068528 + L2 LINE L2 1546 1968 -1346 237 225 0 0 chr6 126346716 126346756 -56068486 - LTR16B LTR ERVL 0 464 425 2275 298 64 38 chr6 126346756 126347601 -56067641 - HERV16 LTR ERVL -2475 2521 1700 3122 176 18 16 chr6 126347601 126348114 -56067128 + MLT2B3 LTR ERVL 1 517 -37 575 68 29 10 chr6 126348114 126348217 -56067025 + (TCTA)n Simple_repeat Simple_repeat 3 107 0 3122 176 18 16 chr6 126348217 126348254 -56066988 + MLT2B3 LTR ERVL 517 552 -2 2275 298 64 38 chr6 126348254 126348322 -56066920 - HERV16 LTR ERVL -3296 1700 1635 2686 88 13 8 chr6 126348322 126348695 -56066547 + THE1C LTR MaLR 1 375 0 2275 298 64 38 chr6 126348695 126349070 -56066172 - HERV16 LTR ERVL -3361 1635 1246 1387 311 46 9 chr6 126349079 126349604 -56065638 - HERV16 LTR ERVL -3905 1091 548 425 249 55 67 chr6 126349693 126349858 -56065384 + L2 LINE L2 3151 3313 0 244 295 36 9 chr6 126349880 126349992 -56065250 + L1ME4a LINE L1 5772 5886 -235 2124 106 7 10 chr6 126351285 126351586 -56063656 + AluSp SINE Alu 1 300 -13 716 255 123 67 chr6 126352064 126352300 -56062942 - LTR67 LTR ERVL -22 535 314 2436 117 17 3 chr6 126352300 126352659 -56062583 + THE1B LTR MaLR 1 364 0 716 255 123 67 chr6 126352659 126352927 -56062315 - LTR67 LTR ERVL -243 314 3 186 310 86 43 chr6 126353119 126353235 -56062007 - L3b LINE CR1 -127 1456 1336 2291 92 10 7 chr6 126353710 126354014 -56061228 + AluSg SINE Alu 1 305 -5 21 36 0 0 chr6 126354905 126354933 -56060309 + AT_rich Low_complexity Low_complexity 1 28 0 252 282 252 10 chr6 126354970 126355073 -56060169 - L2 LINE L2 -3 3269 3142 250 271 14 29 chr6 126355357 126355427 -56059815 - L2 LINE L2 -16 3297 3229 590 223 152 22 chr6 126357637 126357821 -56057421 + MIR SINE MIR 55 262 0 2401 90 0 3 chr6 126358027 126358339 -56056903 - AluY SINE Alu 0 311 1 424 256 187 22 chr6 126358449 126358813 -56056429 + L2 LINE L2 1947 2370 -944 260 258 66 108 chr6 126359061 126359274 -56055968 + L2 LINE L2 2892 3095 -177 317 313 36 12 chr6 126359505 126359671 -56055571 + L1ME4a LINE L1 5941 6110 -11 2619 191 40 15 chr6 126359931 126360476 -56054766 + L1MA2 LINE L1 3699 4257 -1889 853 158 0 0 chr6 126360497 126360636 -56054606 - L1 LINE L1 -2309 3837 3699 6984 127 8 24 chr6 126360648 126362185 -56053057 + L1MA2 LINE L1 4258 5752 -552 2030 122 7 10 chr6 126362185 126362479 -56052763 + AluSx SINE Alu 1 293 -19 6984 127 8 24 chr6 126362479 126363024 -56052218 + L1MA2 LINE L1 5752 6304 0 4594 175 17 8 chr6 126363034 126364386 -56050856 + L1PB4 LINE L1 4735 6101 -55 21 0 0 0 chr6 126364396 126364417 -56050825 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 126364925 126364956 -56050286 + AT_rich Low_complexity Low_complexity 1 31 0 528 203 41 8 chr6 126365435 126365558 -56049684 + 7SK RNA RNA 2 128 -65 2235 58 0 89 chr6 126365994 126366319 -56048923 - AluY SINE Alu -14 297 2 572 205 41 8 chr6 126367519 126367641 -56047601 + 7SK RNA RNA 3 128 -65 192 362 0 0 chr6 126367832 126367890 -56047352 - MIR SINE MIR -106 102 45 240 314 43 0 chr6 126368020 126368090 -56047152 - L2 LINE L2 0 3272 3200 741 321 88 25 chr6 126369421 126369897 -56045345 - L2 LINE L2 -241 3072 2560 1133 196 140 4 chr6 126370535 126370770 -56044472 + Tigger7 DNA MER2_type 1 267 -2220 1784 114 124 59 chr6 126370799 126371220 -56044022 + MSTA LTR MaLR 1 428 0 403 191 0 0 chr6 126371220 126371283 -56043959 + Tigger7 DNA MER2_type 2415 2477 -10 225 269 0 60 chr6 126371351 126371418 -56043824 + polypurine Low_complexity Low_complexity 3 65 0 25 0 0 0 chr6 126373516 126373541 -56041701 + AT_rich Low_complexity Low_complexity 1 25 0 294 305 0 0 chr6 126375226 126375390 -56039852 + (CA)n Simple_repeat Simple_repeat 1 164 0 403 308 112 12 chr6 126375951 126376120 -56039122 + MIR3 SINE MIR 18 203 -5 201 74 0 0 chr6 126376370 126376397 -56038845 + (TAA)n Simple_repeat Simple_repeat 1 27 0 3873 59 12 0 chr6 126376450 126376955 -56038287 - L1PA8 LINE L1 -4 6168 5658 241 283 0 0 chr6 126377236 126377296 -56037946 + (TA)n Simple_repeat Simple_repeat 2 61 0 455 274 160 11 chr6 126377456 126377631 -56037611 + MIR SINE MIR 38 238 -24 1948 145 3 26 chr6 126379352 126379655 -56035587 + AluSx SINE Alu 1 296 -16 225 330 57 11 chr6 126379655 126379743 -56035499 - MIR3 SINE MIR -26 182 91 2706 269 152 46 chr6 126380221 126382477 -56032765 + HAL1 LINE L1 9 2502 -5 219 273 45 0 chr6 126382587 126382653 -56032589 - L2 LINE L2 -7 3306 3238 513 279 33 16 chr6 126382720 126382903 -56032339 - L2 LINE L2 -914 2400 2215 352 245 47 70 chr6 126384729 126384962 -56030280 + MLT1J LTR MaLR 109 416 -195 1600 172 107 0 chr6 126385312 126385620 -56029622 + MER58B DNA MER1_type 1 341 0 582 246 0 0 chr6 126387144 126387270 -56027972 + MER94 DNA DNA 8 133 -1 180 0 0 0 chr6 126387899 126387919 -56027323 + (T)n Simple_repeat Simple_repeat 1 20 0 278 294 22 0 chr6 126387968 126388060 -56027182 + L1ME4a LINE L1 5959 6052 -69 35 0 0 0 chr6 126388079 126388114 -56027128 + AT_rich Low_complexity Low_complexity 1 35 0 243 266 53 0 chr6 126389602 126389696 -56025546 + MER94 DNA DNA 1 99 -35 235 227 125 45 chr6 126390614 126390702 -56024540 - MER63 DNA MER1_type -310 752 32 887 201 4 92 chr6 126390941 126391170 -56024072 + MER58C DNA MER1_type 1 209 -6 188 371 32 32 chr6 126391524 126391648 -56023594 - L2 LINE L2 -491 2823 2700 235 329 146 32 chr6 126391687 126391933 -56023309 - L2 LINE L2 -705 2609 2336 324 0 0 0 chr6 126392161 126392197 -56023045 + (TA)n Simple_repeat Simple_repeat 1 36 0 461 243 20 53 chr6 126393574 126393725 -56021517 - MIR SINE MIR -18 244 100 1712 221 89 7 chr6 126393750 126394175 -56021067 + MLT1C LTR MaLR 6 465 -2 26871 135 9 10 chr6 126395628 126396845 -56018397 + L1PA8A LINE L1 3 1219 -5227 186 118 0 0 chr6 126396845 126396879 -56018363 + (CAA)n Simple_repeat Simple_repeat 3 36 0 26871 135 9 10 chr6 126396879 126402048 -56013194 + L1PA8A LINE L1 1219 6446 0 4031 100 2 9 chr6 126402226 126402807 -56012435 - L1PA10 LINE L1 0 6168 5592 181 403 0 0 chr6 126403984 126404046 -56011196 - MIR SINE MIR -164 98 37 1348 138 60 0 chr6 126405171 126405388 -56009854 - MER30 DNA MER1_type 0 230 1 195 222 63 63 chr6 126405403 126405466 -56009776 - MIR3 SINE MIR -46 162 100 229 278 122 11 chr6 126406006 126406096 -56009146 + MIR3 SINE MIR 107 206 -2 24 0 0 0 chr6 126408711 126408735 -56006507 + AT_rich Low_complexity Low_complexity 1 24 0 617 181 79 73 chr6 126409027 126409204 -56006038 - MER5B DNA MER1_type 0 178 1 383 250 54 0 chr6 126409563 126409655 -56005587 - L2 LINE L2 -4 3268 3172 240 321 37 9 chr6 126410866 126410975 -56004267 - MER91C DNA MER1_type -3 137 26 267 323 73 101 chr6 126411268 126411636 -56003606 + L2 LINE L2 2905 3262 -10 211 186 0 47 chr6 126411842 126411885 -56003357 + MIR SINE MIR 222 262 0 2278 154 17 7 chr6 126412654 126413063 -56002179 - L1MC1 LINE L1 -9 6324 5912 9096 188 33 20 chr6 126413066 126417895 -55997347 - L1MCa LINE L1 -1430 4996 20 23 68 0 0 chr6 126417967 126418011 -55997231 + AT_rich Low_complexity Low_complexity 1 44 0 1242 88 6 0 chr6 126418153 126418323 -55996919 - AluY SINE Alu -14 297 127 21 57 0 0 chr6 126418533 126418568 -55996674 + AT_rich Low_complexity Low_complexity 1 35 0 508 300 50 17 chr6 126419388 126419568 -55995674 - MIR SINE MIR -48 214 29 1297 336 142 25 chr6 126419573 126420144 -55995098 + L3 LINE CR1 576 1291 -286 2002 141 0 7 chr6 126420144 126420435 -55994807 + AluJo SINE Alu 7 295 -17 1297 336 142 25 chr6 126420435 126420758 -55994484 + L3 LINE CR1 1291 1575 -2 1574 203 56 60 chr6 126420838 126421306 -55993936 - MER31B LTR ERV1 0 466 1 1000 185 9 56 chr6 126421535 126421686 -55993556 + MER3 DNA MER1_type 1 141 -68 2178 116 7 3 chr6 126421686 126421980 -55993262 - AluSx SINE Alu -17 295 1 1000 185 9 56 chr6 126421980 126422044 -55993198 + MER3 DNA MER1_type 141 206 -3 671 245 83 15 chr6 126422238 126422442 -55992800 + MIR SINE MIR 1 218 -44 521 319 137 39 chr6 126424238 126424538 -55990704 + L2 LINE L2 2170 2439 -875 1934 155 7 0 chr6 126424538 126424829 -55990413 - AluSx SINE Alu -19 293 1 521 319 137 39 chr6 126424829 126425230 -55990012 + L2 LINE L2 2439 2940 -374 839 251 146 0 chr6 126425354 126425573 -55989669 - MIR SINE MIR -10 252 2 234 0 0 0 chr6 126426343 126426369 -55988873 + (CA)n Simple_repeat Simple_repeat 2 27 0 348 198 81 0 chr6 126426770 126426856 -55988386 + L1MA9 LINE L1 6180 6272 -40 21 89 0 0 chr6 126427411 126427467 -55987775 + AT_rich Low_complexity Low_complexity 1 56 0 203 97 48 16 chr6 126427603 126427665 -55987577 + (TA)n Simple_repeat Simple_repeat 1 64 0 21 57 0 0 chr6 126427780 126427815 -55987427 + AT_rich Low_complexity Low_complexity 1 35 0 321 67 0 33 chr6 126428062 126428122 -55987120 + L1MA4 LINE L1 6238 6295 -5 190 258 0 79 chr6 126428448 126428537 -55986705 - L3b LINE CR1 -400 1183 1102 596 306 15 24 chr6 126429040 126429246 -55985996 - L3b LINE CR1 -92 1491 1288 290 304 76 19 chr6 126429855 126430013 -55985229 + L2 LINE L2 3134 3300 -13 197 261 43 14 chr6 126430335 126430404 -55984838 - MIR SINE MIR -7 255 185 309 316 128 27 chr6 126430416 126430638 -55984604 + MIR SINE MIR 6 248 -14 1797 164 7 3 chr6 126432586 126432878 -55982364 - AluSx SINE Alu -15 297 5 303 243 136 19 chr6 126433728 126433831 -55981411 + MIR SINE MIR 43 157 -105 248 308 108 42 chr6 126434475 126434595 -55980647 + L3b LINE CR1 1189 1316 -267 622 202 0 39 chr6 126434600 126434729 -55980513 + Charlie5 DNA MER1_type 1 124 -2488 1447 175 53 11 chr6 126434766 126435126 -55980116 + Charlie5 DNA MER1_type 2250 2624 0 1762 34 10 5 chr6 126435447 126435656 -55979586 + AluY SINE Alu 87 296 -15 471 268 0 0 chr6 126435931 126436110 -55979132 + (TA)n Simple_repeat Simple_repeat 2 180 0 219 297 0 0 chr6 126436112 126436176 -55979066 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 315 333 96 15 chr6 126436443 126436578 -55978664 + MIR3 SINE MIR 60 205 -3 899 262 54 54 chr6 126436642 126437145 -55978097 + L1ME2 LINE L1 1890 2392 -4004 * 5611 144 70 10 chr6 126437129 126438104 -55977138 + L1PB1 LINE L1 3 1035 -5828 1995 194 5 0 chr6 126438105 126438506 -55976736 + L1PB1 LINE L1 4643 5045 -1817 4568 144 58 20 chr6 126438507 126439299 -55975943 - LTR12 LTR ERV1 0 826 5 2484 192 37 25 chr6 126439315 126439909 -55975333 - pTR5 LTR ERV1 -1094 1344 744 4868 150 25 3 chr6 126439909 126440865 -55974377 + L1PB1 LINE L1 5042 6858 -9 4868 76 15 0 chr6 126440865 126441519 -55973723 + L1PB1 LINE L1 6203 6867 0 4868 150 25 3 chr6 126441519 126441530 -55973712 + L1PB1 LINE L1 6858 6867 0 644 126 71 16 chr6 126441532 126441659 -55973583 + L1PA15 LINE L1 6023 6156 -9 720 201 123 11 chr6 126441679 126441947 -55973295 + L1ME2 LINE L1 2316 2613 -3602 * 888 259 54 0 chr6 126441945 126442591 -55972651 + L1ME2 LINE L1 3025 3734 -2481 * 3345 220 64 26 chr6 126442586 126443199 -55972043 + L1ME2 LINE L1 4310 4898 -1335 2181 103 0 0 chr6 126443199 126443480 -55971762 - AluSq SINE Alu -32 281 1 3345 220 64 26 chr6 126443480 126444649 -55970593 + L1ME2 LINE L1 4898 6232 -1 21 0 0 0 chr6 126444657 126444678 -55970564 + AT_rich Low_complexity Low_complexity 1 21 0 227 286 0 0 chr6 126444998 126445054 -55970188 + L2 LINE L2 3217 3272 0 500 245 9 0 chr6 126445481 126445587 -55969655 + MER5A DNA MER1_type 1 107 -82 286 260 49 32 chr6 126445589 126445678 -55969564 + MLT1K LTR MaLR 447 540 -48 714 213 47 12 chr6 126445678 126445847 -55969395 + MER5B DNA MER1_type 3 177 -1 286 260 49 32 chr6 126445847 126445880 -55969362 + MLT1K LTR MaLR 540 571 -17 4255 107 0 19 chr6 126447305 126447948 -55967294 - L1PB3 LINE L1 -1 6153 5523 434 271 33 33 chr6 126448810 126448961 -55966281 - MIR SINE MIR -20 242 92 441 214 54 27 chr6 126449674 126449786 -55965456 - L2 LINE L2 0 3313 3199 327 275 99 55 chr6 126449979 126450161 -55965081 - MIR SINE MIR -8 254 65 459 182 36 9 chr6 126450399 126450509 -55964733 + L1MB7 LINE L1 6071 6183 -1 1447 286 57 14 chr6 126450732 126451221 -55964021 + LTR33 LTR ERVL 1 510 -11 1510 116 163 8 chr6 126451342 126451600 -55963642 + AluSg SINE Alu 1 298 -2 325 250 0 20 chr6 126451605 126451705 -55963537 - MER113 DNA MER1_type? -410 111 14 455 313 73 11 chr6 126452132 126452311 -55962931 - MIR SINE MIR -17 245 56 292 315 170 0 chr6 126452445 126452610 -55962632 - L3b LINE CR1 -66 1517 1325 805 255 35 59 chr6 126454538 126454583 -55960659 - MIR SINE MIR 0 262 217 1143 179 31 31 chr6 126454583 126454807 -55960435 + MER58A DNA MER1_type 1 224 0 805 255 35 59 chr6 126454807 126455016 -55960226 - MIR SINE MIR -45 217 14 208 194 0 0 chr6 126455157 126455193 -55960049 + L2 LINE L2 3221 3256 -16 1839 160 7 7 chr6 126456202 126456496 -55958746 - AluJb SINE Alu -18 294 1 212 323 0 31 chr6 126457439 126457566 -55957676 + GA-rich Low_complexity Low_complexity 5 127 0 558 318 90 9 chr6 126457795 126458018 -55957224 + MIR SINE MIR 22 262 0 237 362 29 0 chr6 126458625 126458730 -55956512 - MIR SINE MIR -67 195 88 211 146 49 0 chr6 126458990 126459031 -55956211 - MIR SINE MIR -133 75 33 205 293 69 0 chr6 126459445 126459503 -55955739 - L2 LINE L2 -4 3268 3207 37 81 0 0 chr6 126460485 126460571 -55954671 + AT_rich Low_complexity Low_complexity 1 86 0 27 29 0 0 chr6 126461877 126461911 -55953331 + AT_rich Low_complexity Low_complexity 1 34 0 2057 149 0 3 chr6 126464465 126464767 -55950475 + AluSx SINE Alu 1 301 -11 2214 94 7 3 chr6 126464769 126465055 -55950187 + AluSc SINE Alu 8 294 -15 384 364 17 64 chr6 126465880 126466177 -55949065 + L2 LINE L2 2606 2888 -426 1669 308 82 21 chr6 126466687 126467513 -55947729 + L2 LINE L2 1973 2849 -465 441 261 164 15 chr6 126467673 126467807 -55947435 + L2 LINE L2 3159 3312 -1 24 32 0 0 chr6 126467829 126467860 -55947382 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr6 126467873 126467894 -55947348 + (A)n Simple_repeat Simple_repeat 1 21 0 1107 259 48 90 chr6 126467982 126468675 -55946567 + L2 LINE L2 2531 3188 -125 2226 116 3 3 chr6 126468675 126468985 -55946257 + AluSx SINE Alu 1 310 -2 1107 259 48 90 chr6 126468985 126469103 -55946139 + L2 LINE L2 3188 3309 -4 2232 50 53 0 chr6 126470024 126470305 -55944937 + AluY SINE Alu 1 296 -15 682 282 87 17 chr6 126471831 126472072 -55943170 + MIR SINE MIR 2 259 -3 767 174 61 0 chr6 126472073 126472205 -55943037 + FRAM SINE Alu 1 137 -39 192 40 0 0 chr6 126472205 126472230 -55943012 + (TC)n Simple_repeat Simple_repeat 1 25 0 200 241 13 0 chr6 126472230 126472309 -55942933 + (TA)n Simple_repeat Simple_repeat 2 81 0 1088 212 52 52 chr6 126472680 126472987 -55942255 - MER119 DNA MER1_type -1 582 276 7554 30 0 2 chr6 126473701 126475296 -55939946 + L1PA4 LINE L1 4557 6152 -3 596 238 65 65 chr6 126475930 126476038 -55939204 + MER112 DNA MER1_type 11 118 -142 723 149 34 14 chr6 126476038 126476186 -55939056 - L1MB8 LINE L1 -1 6177 6027 596 238 65 65 chr6 126476186 126476325 -55938917 + MER112 DNA MER1_type 117 258 -2 372 125 0 0 chr6 126477281 126477345 -55937897 + (TC)n Simple_repeat Simple_repeat 1 64 0 627 299 152 34 chr6 126477797 126478311 -55936931 - L2 LINE L2 0 3313 2731 186 103 0 0 chr6 126478359 126478388 -55936854 + (TA)n Simple_repeat Simple_repeat 1 29 0 501 47 0 0 chr6 126478640 126478704 -55936538 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 607 221 16 8 chr6 126479339 126479466 -55935776 - FLAM_A SINE Alu -5 128 1 1985 148 17 0 chr6 126479769 126480138 -55935104 + AluSx SINE Alu 1 374 0 485 304 19 13 chr6 126481065 126481223 -55934019 - L2 LINE L2 0 3313 3155 267 287 119 10 chr6 126481622 126481723 -55933519 - MIR SINE MIR -91 171 60 622 195 201 0 chr6 126481859 126482008 -55933234 + MER5A DNA MER1_type 4 182 -7 706 303 148 39 chr6 126482897 126483695 -55931547 + L2 LINE L2 1946 2830 -484 267 287 50 59 chr6 126484076 126484177 -55931065 + L2 LINE L2 3214 3313 0 289 331 105 0 chr6 126484194 126484318 -55930924 - MIR3 SINE MIR -5 203 67 284 309 11 43 chr6 126485260 126485354 -55929888 + L2 LINE L2 3182 3272 0 742 230 164 9 chr6 126486055 126486268 -55928974 - MIR SINE MIR -1 261 16 1255 33 0 0 chr6 126486494 126486691 -55928551 + L1PA4 LINE L1 5987 6183 0 264 312 101 5 chr6 126487033 126487232 -55928010 - L1MC/D LINE L1 -2232 5576 5359 228 204 48 10 chr6 126487233 126487336 -55927906 + (TA)n Simple_repeat Simple_repeat 1 107 0 2813 85 10 19 chr6 126487336 126487747 -55927495 - L1PB3 LINE L1 -6 6148 5742 1700 158 39 3 chr6 126488089 126488374 -55926868 - AluJb SINE Alu -11 301 7 23 92 0 0 chr6 126488593 126488658 -55926584 + AT_rich Low_complexity Low_complexity 1 65 0 1734 112 11 14 chr6 126489113 126489389 -55925853 + L1PB1 LINE L1 5876 6150 -1 235 239 0 0 chr6 126489426 126489472 -55925770 + MER103 DNA DNA 76 121 -45 407 276 23 35 chr6 126490187 126490361 -55924881 + L1ME4a LINE L1 5729 5900 -221 204 97 0 0 chr6 126490370 126490401 -55924841 + (TA)n Simple_repeat Simple_repeat 1 31 0 23 92 0 0 chr6 126490485 126490550 -55924692 + AT_rich Low_complexity Low_complexity 1 65 0 195 42 0 0 chr6 126492509 126492533 -55922709 + (TC)n Simple_repeat Simple_repeat 2 25 0 2141 87 0 4 chr6 126492533 126492808 -55922434 - AluSc SINE Alu -28 281 8 14319 153 28 17 chr6 126492962 126496508 -55918734 - L1MA1 LINE L1 0 7721 4095 1890 81 0 0 chr6 126496508 126496742 -55918500 + AluY SINE Alu 1 234 -77 14319 153 28 17 chr6 126496742 126497513 -55917729 - L1MA1 LINE L1 -3626 4095 3334 2236 115 3 0 chr6 126498122 126498417 -55916825 + AluSq SINE Alu 1 296 -17 2380 87 3 0 chr6 126499288 126499587 -55915655 - AluSx SINE Alu -12 300 1 22 56 0 0 chr6 126499766 126499802 -55915440 + AT_rich Low_complexity Low_complexity 1 36 0 6205 134 36 9 chr6 126500459 126502559 -55912683 - L1MA5A LINE L1 -3 6294 4134 24 32 0 0 chr6 126502934 126502965 -55912277 + AT_rich Low_complexity Low_complexity 1 31 0 519 150 170 0 chr6 126503342 126503442 -55911800 + AluJb SINE Alu 176 292 -20 371 172 251 49 chr6 126503446 126503509 -55911733 + L1ME4a LINE L1 5826 5875 -246 6781 135 45 11 chr6 126503509 126504700 -55910542 + Tigger3b DNA MER2_type 1 1231 0 371 172 251 49 chr6 126504700 126504799 -55910443 + L1ME4a LINE L1 5875 6021 -100 2499 51 0 0 chr6 126506209 126506501 -55908741 + AluY SINE Alu 1 292 -19 743 235 44 78 chr6 126506749 126507161 -55908081 - MER93a LTR ERV1 -4 398 1 457 303 65 0 chr6 126507178 126507333 -55907909 + MIR SINE MIR 10 174 -88 505 300 69 17 chr6 126507454 126507687 -55907555 - L2 LINE L2 -8 3305 3061 2166 97 72 29 chr6 126508428 126508777 -55906465 - THE1B LTR MaLR 0 364 1 542 362 60 4 chr6 126508919 126509154 -55906088 - MIR SINE MIR -13 249 2 22 0 0 0 chr6 126509489 126509511 -55905731 + AT_rich Low_complexity Low_complexity 1 22 0 475 161 64 11 chr6 126509593 126509759 -55905483 + MER33 DNA MER1_type 1 253 -110 21 0 0 0 chr6 126509760 126509781 -55905461 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 126510306 126510338 -55904904 + AT_rich Low_complexity Low_complexity 1 32 0 2335 52 0 17 chr6 126511337 126511628 -55903614 + AluY SINE Alu 12 297 -14 1921 159 0 10 chr6 126512170 126512471 -55902771 + AluJo SINE Alu 1 298 -14 234 0 0 0 chr6 126512560 126512586 -55902656 + (TG)n Simple_repeat Simple_repeat 2 27 0 1762 185 0 7 chr6 126513484 126513786 -55901456 + AluJb SINE Alu 3 302 -10 237 284 40 0 chr6 126514426 126514500 -55900742 - MIR SINE MIR -69 193 117 2613 143 36 6 chr6 126514775 126515252 -55899990 - L1MB7 LINE L1 0 6184 5694 316 245 106 0 chr6 126515393 126515487 -55899755 - MER81 DNA DNA -10 104 1 1680 184 7 7 chr6 126515763 126516072 -55899170 + AluJb SINE Alu 1 309 -3 1923 134 7 42 chr6 126518646 126518952 -55896290 - AluJb SINE Alu -16 296 2 33 0 0 0 chr6 126519052 126519085 -55896157 + AT_rich Low_complexity Low_complexity 1 33 0 1851 167 0 0 chr6 126519086 126519368 -55895874 - AluJo SINE Alu -29 283 2 469 236 71 8 chr6 126519755 126519882 -55895360 + MIR3 SINE MIR 68 202 -6 948 146 7 0 chr6 126520274 126520411 -55894831 + AluJo SINE Alu 1 138 -174 1535 179 90 4 chr6 126520411 126520690 -55894552 + AluJo SINE Alu 3 305 -7 250 302 87 34 chr6 126520714 126520863 -55894379 - MIR SINE MIR -32 230 74 351 96 0 0 chr6 126521171 126521223 -55894019 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 24 0 0 0 chr6 126522758 126522782 -55892460 + AT_rich Low_complexity Low_complexity 1 24 0 738 92 9 28 chr6 126523803 126523912 -55891330 - U6 snRNA snRNA 0 107 1 352 360 41 15 chr6 126524213 126524410 -55890832 - L1ME2 LINE L1 -218 5946 5745 471 294 63 19 chr6 126524478 126524747 -55890495 - L1ME2 LINE L1 -2210 5598 5318 4407 190 26 20 chr6 126525588 126526843 -55888399 - L1MD1 LINE L1 -11 6625 5362 180 0 0 0 chr6 126526859 126526879 -55888363 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 565 195 8 0 chr6 126526888 126527011 -55888231 + L1M4 LINE L1 2707 2830 -3316 3282 236 19 60 chr6 126527012 126527115 -55888127 + L1M4 LINE L1 3067 3173 -2973 2311 113 0 0 chr6 126527115 126527417 -55887825 + AluSq SINE Alu 1 302 -11 3282 236 19 60 chr6 126527417 126528463 -55886779 + L1M4 LINE L1 3173 4164 -1982 180 0 0 0 chr6 126528463 126528483 -55886759 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 3282 236 19 60 chr6 126528483 126528576 -55886666 + L1M4 LINE L1 4164 4259 -1887 1548 223 26 17 chr6 126528594 126529083 -55886159 - L1MD1 LINE L1 -3444 3096 2605 1048 194 75 30 chr6 126529087 126529422 -55885820 - L1MD1 LINE L1 -4021 2519 2170 1570 113 73 29 chr6 126529440 126529646 -55885596 + MER7A DNA MER2_type 63 283 -2755 1768 150 60 41 chr6 126529646 126530012 -55885230 - THE1C LTR MaLR -2 373 1 1570 113 73 29 chr6 126530012 126530079 -55885163 + MER7A DNA MER2_type 283 346 0 2203 210 85 27 chr6 126530080 126530749 -55884493 - L1MD1 LINE L1 -5500 1040 17 945 163 19 12 chr6 126531944 126532104 -55883138 + AluJb SINE Alu 144 304 -8 627 161 42 21 chr6 126532636 126532779 -55882463 - L1MC1 LINE L1 0 6333 6188 354 269 62 23 chr6 126533078 126533208 -55882034 - MIR3 SINE MIR -54 154 20 1151 143 117 3 chr6 126533945 126534357 -55880885 - MER21A LTR ERV1 -383 480 1 3369 90 6 0 chr6 126534394 126534860 -55880382 - L1PB1 LINE L1 -2 6149 5681 11931 161 38 13 chr6 126534869 126537111 -55878131 - MER41B-int LTR ERV1 -54 4137 1841 733 130 29 29 chr6 126537086 126537224 -55878018 - MER41B-int LTR ERV1 -2927 3831 3694 * 7832 188 39 35 chr6 126537246 126537403 -55877839 - MER41B-int LTR ERV1 -2370 1821 1666 2601 64 0 0 chr6 126537403 126537714 -55877528 - AluY SINE Alu 0 311 1 7832 188 39 35 chr6 126537714 126539244 -55875998 - MER41B-int LTR ERV1 -2525 1666 129 3785 147 11 14 chr6 126539246 126539881 -55875361 - MER41B LTR ERV1 -2 633 1 15954 100 37 16 chr6 126539881 126540560 -55874682 - MER41B-int LTR ERV1 0 5946 5283 1879 56 0 0 chr6 126540560 126540794 -55874448 + L1PA5 LINE L1 5914 6147 -7 15954 100 37 16 chr6 126540794 126542086 -55873156 - MER41B-int LTR ERV1 -663 5283 3904 2343 79 3 0 chr6 126542086 126542377 -55872865 - AluSq SINE Alu -21 292 1 15954 100 37 16 chr6 126542377 126542996 -55872246 - MER41B-int LTR ERV1 -2042 3904 3300 4454 130 72 23 chr6 126542984 126543805 -55871437 - MER57-int LTR ERV1 -3900 3637 2777 * 918 136 6 28 chr6 126543797 126543973 -55871269 - MER57-int LTR ERV1 -3929 2017 1846 * 1325 109 75 0 chr6 126543961 126544162 -55871080 - MER57-int LTR ERV1 -4339 1607 1392 340 83 48 143 chr6 126544163 126544247 -55870995 - MER57-int LTR ERV1 -5256 690 615 1514 196 79 8 chr6 126544674 126545052 -55870190 + MER31B LTR ERV1 1 405 -61 2279 113 0 13 chr6 126545173 126545482 -55869760 - AluSq SINE Alu -8 305 1 195 289 72 24 chr6 126545584 126545667 -55869575 + L2 LINE L2 3027 3113 -159 414 98 0 0 chr6 126545816 126545877 -55869365 - MSTA LTR MaLR -367 61 1 21 0 0 0 chr6 126546071 126546092 -55869150 + AT_rich Low_complexity Low_complexity 1 21 0 787 161 36 0 chr6 126546424 126546561 -55868681 + FAM SINE Alu 22 163 -22 186 189 0 0 chr6 126546563 126546600 -55868642 + (CATA)n Simple_repeat Simple_repeat 2 38 0 228 111 0 0 chr6 126548244 126548280 -55866962 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 192 40 0 0 chr6 126548649 126548674 -55866568 + (CGGGG)n Simple_repeat Simple_repeat 2 26 0 332 252 141 85 chr6 126548722 126549154 -55866088 - L1M2 LINE L1 -5583 1266 457 22 0 0 0 chr6 126550180 126550202 -55865040 + AT_rich Low_complexity Low_complexity 1 22 0 1911 133 0 0 chr6 126550431 126550701 -55864541 - AluJb SINE Alu -25 287 18 220 351 22 67 chr6 126550941 126551075 -55864167 - MER91A DNA MER1_type -1 195 68 216 292 69 14 chr6 126551656 126551728 -55863514 + L2 LINE L2 3151 3226 -46 936 274 72 52 chr6 126552551 126552848 -55862394 + L2 LINE L2 2817 3125 -188 2114 154 6 23 chr6 126552848 126553191 -55862051 + MER1B DNA MER1_type 1 337 0 936 274 72 52 chr6 126553191 126553280 -55861962 + L2 LINE L2 3125 3211 -102 1737 159 14 7 chr6 126553423 126553713 -55861529 + AluJb SINE Alu 11 302 -10 299 303 61 20 chr6 126554189 126554288 -55860954 + L2 LINE L2 3158 3260 -12 1935 140 0 3 chr6 126554431 126554724 -55860518 + AluJb SINE Alu 1 292 -20 2521 151 62 5 chr6 126555114 126555517 -55859725 - MSTB LTR MaLR 0 426 1 2467 54 0 3 chr6 126555672 126555970 -55859272 + AluY SINE Alu 1 297 -14 279 0 0 0 chr6 126556163 126556194 -55859048 + (CA)n Simple_repeat Simple_repeat 1 31 0 553 278 81 64 chr6 126557595 126558277 -55856965 - L1MC5 LINE L1 -228 7813 7201 229 284 46 73 chr6 126558353 126558462 -55856780 - MIR3 SINE MIR -47 161 56 234 245 29 88 chr6 126559292 126559394 -55855848 + MER5A DNA MER1_type 77 183 -6 236 296 35 12 chr6 126559655 126559751 -55855491 + MIR SINE MIR 57 155 -53 207 186 0 0 chr6 126560012 126560055 -55855187 + (TATG)n Simple_repeat Simple_repeat 4 46 0 249 276 41 71 chr6 126560096 126560194 -55855048 + MIR SINE MIR 166 260 -2 214 309 175 24 chr6 126561272 126561398 -55853844 - MIR SINE MIR -70 192 48 365 321 45 50 chr6 126561453 126561674 -55853568 - MIR SINE MIR 0 262 43 674 221 38 76 chr6 126562790 126563052 -55852190 - MER112 DNA MER1_type -1 259 8 1242 78 12 18 chr6 126563114 126563280 -55851962 + AluSg/x SINE Alu 131 295 -15 460 294 106 24 chr6 126564742 126565119 -55850123 - L1MC5 LINE L1 -102 7859 7452 1831 162 10 16 chr6 126565190 126565504 -55849738 + AluJo SINE Alu 1 312 0 948 147 24 6 chr6 126565622 126565792 -55849450 - L1MD1 LINE L1 -6 6236 6064 1425 101 5 0 chr6 126565913 126566101 -55849141 + AluSp SINE Alu 108 296 -17 2177 87 14 3 chr6 126566654 126566940 -55848302 + AluY SINE Alu 1 289 -22 320 248 158 65 chr6 126567239 126567396 -55847846 - MER102b DNA MER1_type -1090 338 147 2141 98 11 0 chr6 126567396 126567700 -55847542 - AluSx SINE Alu 0 309 3 320 248 158 65 chr6 126567700 126567787 -55847455 - MER102b DNA MER1_type -1281 147 70 184 400 128 0 chr6 126569101 126569226 -55846016 + L2 LINE L2 3107 3247 -25 238 278 14 0 chr6 126569402 126569474 -55845768 - MIR SINE MIR -51 211 139 697 276 55 55 chr6 126570343 126570723 -55844519 - L2 LINE L2 -2 3311 2932 719 146 15 58 chr6 126571754 126571891 -55843351 + FLAM_C SINE Alu 1 131 -2 475 288 41 20 chr6 126572157 126572401 -55842841 - MIR SINE MIR -1 261 16 255 293 24 0 chr6 126573715 126573797 -55841445 - L1MD3 LINE L1 -212 7783 7700 * 509 211 70 23 chr6 126573777 126573905 -55841337 - L1MC4 LINE L1 -453 7589 7456 28 48 0 0 chr6 126574521 126574563 -55840679 + AT_rich Low_complexity Low_complexity 1 42 0 557 218 57 168 chr6 126575050 126575219 -55840023 + MIR SINE MIR 14 141 -121 1681 210 3 0 chr6 126575219 126575519 -55839723 + AluJb SINE Alu 1 301 -11 557 218 57 168 chr6 126575519 126575629 -55839613 + MIR SINE MIR 141 262 0 302 309 0 0 chr6 126575632 126575713 -55839529 + C-rich Low_complexity Low_complexity 1 81 0 372 71 0 0 chr6 126576396 126576452 -55838790 + (CA)n Simple_repeat Simple_repeat 2 57 0 562 231 65 87 chr6 126576940 126577169 -55838073 - MIR SINE MIR -19 243 20 1694 164 52 11 chr6 126580391 126580678 -55834564 + AluJo SINE Alu 1 299 -13 2225 106 0 13 chr6 126581090 126581391 -55833851 - AluSg SINE Alu -13 297 1 222 308 83 25 chr6 126581928 126582048 -55833194 - L2 LINE L2 -8 3264 3138 270 213 0 75 chr6 126582078 126582141 -55833101 - MIR SINE MIR -5 257 200 2343 78 3 26 chr6 126582141 126582447 -55832795 + AluY SINE Alu 1 299 -12 270 213 0 75 chr6 126582447 126582463 -55832779 - MIR SINE MIR -62 200 184 2249 107 101 21 chr6 126582699 126583036 -55832206 - THE1B LTR MaLR 0 364 1 12477 80 23 1 chr6 126583036 126584581 -55830661 - THE1B-int LTR MaLR 0 1580 2 2241 122 82 20 chr6 126584583 126584926 -55830316 - THE1B LTR MaLR 0 364 1 1478 92 74 18 chr6 126586197 126586414 -55828828 + MER30 DNA MER1_type 1 229 -1 1157 189 9 47 chr6 126587796 126588029 -55827213 - MER58A DNA MER1_type 0 224 1 1187 167 101 0 chr6 126588266 126588464 -55826778 - MER20 DNA MER1_type 0 219 2 1579 183 67 3 chr6 126588508 126588793 -55826449 - AluJo SINE Alu -9 303 1 246 332 118 32 chr6 126588804 126588991 -55826251 - MIR SINE MIR -20 242 40 686 280 65 60 chr6 126589354 126589690 -55825552 + MER46C DNA MER2_type 1 338 0 2264 92 0 13 chr6 126590270 126590573 -55824669 - AluSq SINE Alu -14 299 1 1353 183 53 7 chr6 126590648 126590949 -55824293 + MER33 DNA MER1_type 9 323 -1 31 0 0 0 chr6 126591390 126591421 -55823821 + AT_rich Low_complexity Low_complexity 1 31 0 2879 190 61 26 chr6 126592849 126593422 -55821820 - MLT1E LTR MaLR 0 593 1 956 236 133 76 chr6 126593429 126593917 -55821325 + L3 LINE CR1 1062 1577 0 319 245 64 0 chr6 126594207 126594301 -55820941 + L1ME4a LINE L1 5954 6053 -68 2374 88 3 0 chr6 126594911 126595208 -55820034 - AluY SINE Alu -13 298 1 31 0 0 0 chr6 126595403 126595434 -55819808 + AT_rich Low_complexity Low_complexity 1 31 0 306 89 0 0 chr6 126595858 126595903 -55819339 - MADE1 DNA Mariner -34 46 2 25 0 0 0 chr6 126595923 126595948 -55819294 + AT_rich Low_complexity Low_complexity 1 25 0 287 261 33 98 chr6 126596264 126596305 -55818937 - MIR3 SINE MIR -6 202 160 2254 158 6 3 chr6 126596305 126596641 -55818601 - MER1B DNA MER1_type 0 337 1 287 261 33 98 chr6 126596641 126596752 -55818490 - MIR3 SINE MIR -48 160 60 608 235 42 37 chr6 126597901 126598118 -55817124 - MLT1H1 LTR MaLR -7 548 331 43 35 0 0 chr6 126600807 126600864 -55814378 + AT_rich Low_complexity Low_complexity 1 57 0 289 234 136 18 chr6 126601921 126602033 -55813209 + MIR SINE MIR 39 168 -64 396 295 34 80 chr6 126602953 126603190 -55812052 + MIR SINE MIR 8 233 -29 2511 45 0 0 chr6 126603331 126603620 -55811622 + AluY SINE Alu 10 298 -13 660 124 0 19 chr6 126603734 126603839 -55811403 - FLAM_A SINE Alu 0 142 40 22 0 0 0 chr6 126603957 126603979 -55811263 + AT_rich Low_complexity Low_complexity 1 22 0 1507 193 60 18 chr6 126605553 126605838 -55809404 + AluJo SINE Alu 1 297 -15 2384 104 0 0 chr6 126605858 126606167 -55809075 + AluSq SINE Alu 1 309 -4 434 275 25 85 chr6 126607224 126607540 -55807702 + L1MC4a LINE L1 5665 5961 -1847 719 251 94 38 chr6 126607686 126608080 -55807162 - L1ME4a LINE L1 -2 6119 5704 2150 102 7 10 chr6 126608082 126608387 -55806855 + AluSx SINE Alu 3 306 -6 1455 162 104 0 chr6 126609466 126609725 -55805517 - AluJo SINE Alu -22 290 5 218 292 67 22 chr6 126609906 126609995 -55805247 + MIR3 SINE MIR 100 192 -16 418 230 20 10 chr6 126610451 126610551 -55804691 - MIR SINE MIR -46 216 116 869 203 95 46 chr6 126612100 126612405 -55802837 - MER5C DNA MER1_type -4 320 1 220 250 0 0 chr6 126612428 126612484 -55802758 + MER5A DNA MER1_type 15 70 -119 628 222 168 0 chr6 126613297 126613500 -55801742 + MIR SINE MIR 14 250 -12 228 234 0 0 chr6 126614591 126614638 -55800604 + (TG)n Simple_repeat Simple_repeat 1 47 0 277 256 196 0 chr6 126617277 126617410 -55797832 - L1MEd LINE L1 -4867 1252 1094 288 0 0 0 chr6 126617434 126617466 -55797776 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2224 75 0 0 chr6 126617468 126617748 -55797494 - AluY SINE Alu -31 280 1 1407 184 44 7 chr6 126617917 126618188 -55797054 + AluJo SINE Alu 1 281 -31 320 331 14 7 chr6 126619731 126619870 -55795372 - L1M4 LINE L1 -1624 4522 4383 936 234 88 4 chr6 126619903 126620142 -55795100 + MIR SINE MIR 3 261 -1 691 308 129 39 chr6 126620174 126620682 -55794560 - L1M4 LINE L1 -1841 4305 3844 2391 78 0 0 chr6 126620682 126620977 -55794265 + AluSc SINE Alu 1 295 -14 691 308 129 39 chr6 126620977 126621447 -55793795 - L1M4 LINE L1 -2302 3844 3188 300 284 23 34 chr6 126621988 126622076 -55793166 + MIR SINE MIR 37 123 -85 5398 97 27 13 chr6 126622291 126623119 -55792123 - L1PB4 LINE L1 -2 6154 5316 346 281 58 6 chr6 126623301 126623472 -55791770 - L1M4 LINE L1 -3757 2389 2210 2111 96 34 3 chr6 126623562 126623855 -55791387 + AluSq SINE Alu 3 304 -9 665 316 123 35 chr6 126623858 126624345 -55790897 - HERV16 LTR ERVL -4074 922 393 2544 214 45 8 chr6 126624560 126625092 -55790150 - MER68 LTR ERV1 -10 552 1 955 266 99 42 chr6 126625241 126625673 -55789569 - LTR16B LTR ERVL 0 464 8 2137 132 0 13 chr6 126629509 126629819 -55785423 + AluSx SINE Alu 1 306 -6 1896 147 17 10 chr6 126630035 126630335 -55784907 - AluJb SINE Alu 0 312 11 6153 173 76 24 chr6 126631019 126632402 -55782840 - Charlie1a DNA MER1_type 0 1455 1 24 67 0 0 chr6 126632865 126632910 -55782332 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr6 126633723 126633751 -55781491 + AT_rich Low_complexity Low_complexity 1 28 0 1853 148 3 33 chr6 126633979 126634284 -55780958 + AluJb SINE Alu 2 297 -15 574 262 165 21 chr6 126634723 126634960 -55780282 + L3 LINE CR1 1305 1575 -2 392 384 41 0 chr6 126635092 126635238 -55780004 + MIR3 SINE MIR 48 199 -9 484 244 134 0 chr6 126635319 126635446 -55779796 - MIR SINE MIR -33 229 86 284 240 0 0 chr6 126636119 126636194 -55779048 - HsTC2 DNA Tc2 -1823 75 1 21 36 0 0 chr6 126636809 126636837 -55778405 + AT_rich Low_complexity Low_complexity 1 28 0 777 329 118 55 chr6 126637452 126638664 -55776578 + L2 LINE L2 1555 2842 -472 998 177 94 15 chr6 126640140 126640343 -55774899 + AluJb SINE Alu 84 302 -10 2395 97 0 0 chr6 126640868 126641177 -55774065 + AluSg SINE Alu 1 309 -1 797 237 169 70 chr6 126644226 126644681 -55770561 + MLT1J LTR MaLR 12 511 0 199 269 13 77 chr6 126646279 126646357 -55768885 + L2 LINE L2 3241 3313 0 660 164 22 0 chr6 126646672 126646806 -55768436 - L1MB7 LINE L1 0 6184 6048 302 194 183 0 chr6 126647346 126647439 -55767803 - L1MC4a LINE L1 -1887 5921 5812 1741 261 69 50 chr6 126647502 126648299 -55766943 - L1ME3A LINE L1 -85 6085 5274 206 114 0 45 chr6 126648299 126648343 -55766899 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 333 0 0 0 chr6 126648343 126648380 -55766862 + (CA)n Simple_repeat Simple_repeat 2 38 0 2319 154 174 158 chr6 126648381 126649385 -55765857 + LTR28 LTR ERV1 1 1020 0 338 254 55 0 chr6 126649390 126649500 -55765742 - L1ME3A LINE L1 -890 5256 5141 3062 186 53 15 chr6 126650208 126650747 -55764495 - MER21B LTR ERV1 -14 849 282 2043 181 59 17 chr6 126650747 126651156 -55764086 + MSTB LTR MaLR 1 426 0 3062 186 53 15 chr6 126651156 126651233 -55764009 - MER21B LTR ERV1 -581 282 209 327 260 146 0 chr6 126651582 126651678 -55763564 - MIR SINE MIR -57 151 42 2330 64 0 4 chr6 126652542 126652822 -55762420 - AluY SINE Alu -4 307 29 318 206 122 37 chr6 126653339 126653446 -55761796 - MIR SINE MIR -73 189 74 525 172 11 11 chr6 126653459 126653552 -55761690 + FLAM_A SINE Alu 32 124 -18 38 0 0 0 chr6 126653568 126653606 -55761636 + AT_rich Low_complexity Low_complexity 1 38 0 1005 206 39 0 chr6 126653717 126653921 -55761321 + Charlie1a DNA MER1_type 37 248 -1207 1155 222 15 41 chr6 126653938 126654208 -55761034 - AluJo SINE Alu -7 305 43 582 72 187 108 chr6 126654208 126654347 -55760895 - MSTA LTR MaLR 0 428 279 2098 111 0 17 chr6 126654347 126654635 -55760607 - AluSx SINE Alu -19 293 11 871 114 57 157 chr6 126654636 126654968 -55760274 + Charlie1 DNA MER1_type 2459 2757 -4 228 341 7 80 chr6 126654986 126655018 -55760224 - L2 LINE L2 -420 2894 2861 1492 96 30 35 chr6 126655018 126655248 -55759994 + MER30 DNA MER1_type 2 230 0 228 341 7 80 chr6 126655248 126655353 -55759889 - L2 LINE L2 -453 2861 2767 2239 115 3 3 chr6 126655376 126655689 -55759553 - AluSq SINE Alu 0 313 1 259 246 101 0 chr6 126656110 126656179 -55759063 - L2 LINE L2 -43 3270 3195 228 208 222 14 chr6 126656240 126656312 -55758930 - L2 LINE L2 0 3272 3186 2192 128 3 3 chr6 126656359 126656671 -55758571 + AluJb SINE Alu 1 312 0 2124 103 7 0 chr6 126656904 126657220 -55758022 - AluSx SINE Alu 0 318 1 369 375 38 73 chr6 126657452 126657823 -55757419 - L2 LINE L2 -86 3186 2829 219 280 30 50 chr6 126658013 126658113 -55757129 + L2 LINE L2 2322 2419 -895 1535 189 84 49 chr6 126658113 126658153 -55757089 - MLT1C LTR MaLR 0 467 430 2299 89 7 0 chr6 126658153 126658445 -55756797 + AluSx SINE Alu 1 294 -18 1535 189 84 49 chr6 126658445 126658855 -55756387 - MLT1C LTR MaLR -37 430 1 744 308 75 42 chr6 126658975 126659361 -55755881 + L2 LINE L2 1049 1447 -1867 422 230 18 97 chr6 126659656 126659821 -55755421 + MIR SINE MIR 111 262 0 567 367 57 48 chr6 126659882 126660681 -55754561 + L2 LINE L2 2451 3268 -4 773 206 129 58 chr6 126661052 126661431 -55753811 - LTR56 LTR ERV1 0 445 40 205 50 25 25 chr6 126661436 126661476 -55753766 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5866 149 13 6 chr6 126661476 126663517 -55751725 - L1PB1 LINE L1 -9 6142 4090 1903 132 73 35 chr6 126663804 126664147 -55751095 + L1MA5 LINE L1 5588 5952 -348 1772 167 3 48 chr6 126664147 126664459 -55750783 + AluJo SINE Alu 3 300 -12 1903 132 73 35 chr6 126664459 126664541 -55750701 + L1MA5 LINE L1 5952 6029 -271 1422 146 92 60 chr6 126664543 126664858 -55750384 - MER1B DNA MER1_type 0 339 15 1185 169 72 4 chr6 126664860 126665109 -55750133 + L1MA5 LINE L1 6035 6300 0 28 0 0 0 chr6 126665166 126665194 -55750048 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 126665249 126665271 -55749971 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 126665989 126666028 -55749214 + AT_rich Low_complexity Low_complexity 1 39 0 2303 138 11 72 chr6 126666084 126666540 -55748702 - MSTC LTR MaLR 0 428 1 677 175 26 0 chr6 126666590 126666704 -55748538 + FLAM_C SINE Alu 1 117 -16 201 121 0 0 chr6 126666713 126666746 -55748496 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 248 248 10 30 chr6 126669118 126669198 -55746044 + MIR SINE MIR 31 111 -115 1751 169 42 9 chr6 126669315 126669652 -55745590 - MER7A DNA MER2_type 0 346 1 369 218 109 0 chr6 126670494 126670595 -55744647 - MIR SINE MIR -1 261 150 845 144 5 122 chr6 126670599 126670787 -55744455 - FRAM SINE Alu -14 162 1 274 304 18 27 chr6 126670798 126670910 -55744332 - MIR SINE MIR -137 125 15 207 189 149 14 chr6 126671921 126671995 -55743247 - MIR SINE MIR -12 250 167 23 33 0 0 chr6 126672126 126672156 -55743086 + AT_rich Low_complexity Low_complexity 1 30 0 731 215 0 0 chr6 126672274 126672404 -55742838 + FLAM_A SINE Alu 2 131 -2 331 362 86 30 chr6 126672465 126672697 -55742545 + L2 LINE L2 3015 3259 -13 24 0 0 0 chr6 126672799 126672823 -55742419 + AT_rich Low_complexity Low_complexity 1 24 0 2332 109 0 0 chr6 126673394 126673707 -55741535 + AluSq SINE Alu 1 313 0 674 265 51 107 chr6 126673879 126674467 -55740775 + LTR67 LTR ERVL 2 556 -1 257 255 117 41 chr6 126674470 126674615 -55740627 - MIR SINE MIR -6 256 101 2616 36 7 0 chr6 126674761 126675070 -55740172 - AluY SINE Alu 0 311 1 357 231 28 46 chr6 126675171 126675279 -55739963 + MIR3 SINE MIR 92 197 -11 2123 101 11 3 chr6 126675325 126675611 -55739631 - AluSx SINE Alu -9 303 16 586 165 6 92 chr6 126675846 126676010 -55739232 - MER20 DNA MER1_type -16 203 54 468 220 163 7 chr6 126676014 126676155 -55739087 + AluY SINE Alu 139 301 -10 998 128 0 7 chr6 126676204 126676352 -55738890 + AluSg/x SINE Alu 163 309 -3 252 0 0 0 chr6 126677619 126677647 -55737595 + (T)n Simple_repeat Simple_repeat 1 28 0 536 135 21 10 chr6 126678224 126678320 -55736922 + MER4A LTR ERV1 2 98 -566 1882 112 6 25 chr6 126678320 126678672 -55736570 + MER4A LTR ERV1 261 664 0 1633 91 106 7 chr6 126678675 126678949 -55736293 + MER4A-int LTR ERV1 1 301 -6297 1664 170 150 40 chr6 126678962 126679456 -55735786 - LTR10A LTR ERV1 -61 548 1 7427 119 151 108 chr6 126679456 126680119 -55735123 + MER4A-int LTR ERV1 298 931 -5667 243 88 0 0 chr6 126680119 126680153 -55735089 + (TG)n Simple_repeat Simple_repeat 1 34 0 7427 119 151 108 chr6 126680153 126681637 -55733605 + MER4A-int LTR ERV1 931 2539 -4059 4852 56 0 0 chr6 126681638 126682229 -55733013 + LTR10C LTR ERV1 1 591 0 768 265 40 8 chr6 126682256 126682509 -55732733 + LTR10C-int LTR ERV1 29 289 -6360 230 364 0 8 chr6 126684247 126684376 -55730866 + GA-rich Low_complexity Low_complexity 1 128 0 3411 110 25 7 chr6 126684401 126685003 -55730239 + LTR10C-int LTR ERV1 1919 2531 -4365 2145 121 0 22 chr6 126685003 126685318 -55729924 - AluY SINE Alu -3 308 1 5283 292 43 29 chr6 126685523 126687776 -55727466 + LTR10C-int LTR ERV1 4363 6647 -2 4697 59 2 3 chr6 126687777 126688369 -55726873 + LTR10C LTR ERV1 1 591 0 322 209 0 0 chr6 126688375 126688442 -55726800 - LTR8 LTR ERV1 -501 190 124 2667 129 21 2 chr6 126688442 126688868 -55726374 + MER57B LTR ERV1 1 434 0 3997 145 27 8 chr6 126688868 126689530 -55725712 + MER57B-int LTR ERV1 1 675 -6862 3383 132 54 4 chr6 126689524 126690061 -55725181 + MER4-int LTR ERV1 288 851 -5095 * 4571 141 56 50 chr6 126690058 126692015 -55723227 + MER4-int LTR ERV1 1555 4466 -1595 2271 76 0 0 chr6 126692015 126692292 -55722950 - AluY SINE Alu -13 298 22 4571 141 56 50 chr6 126692292 126692558 -55722684 + MER4-int LTR ERV1 4466 4729 -1332 301 183 85 0 chr6 126692558 126692640 -55722602 + MER4-int LTR ERV1 3593 3681 -2917 * 11456 106 86 59 chr6 126692639 126694654 -55720588 + MER4-int LTR ERV1 3837 5929 -669 1864 138 57 14 chr6 126694654 126694937 -55720305 + AluSx SINE Alu 1 295 -17 11456 106 86 59 chr6 126694937 126695338 -55719904 + MER4-int LTR ERV1 5929 6318 -280 326 183 14 14 chr6 126696481 126696552 -55718690 - AluSp SINE Alu -112 191 121 821 210 0 5 chr6 126696552 126696738 -55718504 - L1M4 LINE L1 -1021 5125 4941 440 323 51 15 chr6 126697705 126697900 -55717342 + MIR SINE MIR 5 206 -56 309 355 19 0 chr6 126698321 126698428 -55716814 + MIR3 SINE MIR 91 199 -9 256 254 107 16 chr6 126699684 126699806 -55715436 - L1ME LINE L1 -379 5742 5610 3743 90 326 0 chr6 126701185 126701808 -55713434 - LTR12 LTR ERV1 0 826 1 396 40 0 0 chr6 126702217 126702267 -55712975 + (TC)n Simple_repeat Simple_repeat 1 50 0 198 0 0 0 chr6 126702266 126702288 -55712954 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 1562 177 19 7 chr6 126702693 126702964 -55712278 - AluJo SINE Alu -25 287 14 1070 293 21 57 chr6 126703213 126703636 -55711606 - L2 LINE L2 -5 3308 2901 2191 80 0 14 chr6 126703686 126704026 -55711216 - AluY SINE Alu 0 336 1 715 229 40 46 chr6 126704368 126704543 -55710699 + MER5B DNA MER1_type 4 177 -1 1972 161 0 10 chr6 126704787 126705092 -55710150 + AluJb SINE Alu 1 302 -10 25 0 0 0 chr6 126705124 126705149 -55710093 + AT_rich Low_complexity Low_complexity 1 25 0 307 289 151 40 chr6 126705415 126705640 -55709602 - MIR SINE MIR 0 262 13 219 360 12 23 chr6 126706268 126706354 -55708888 - MIR SINE MIR -79 129 45 1309 255 108 68 chr6 126707444 126707641 -55707601 - L1MC4a LINE L1 -781 7027 6839 3844 142 37 24 chr6 126707641 126708352 -55706890 - L1MB2 LINE L1 0 6171 5452 1309 255 108 68 chr6 126708352 126709024 -55706218 - L1MC4a LINE L1 -969 6839 6123 2011 261 82 14 chr6 126709035 126709767 -55705475 - L1MC4a LINE L1 -1771 6037 5256 23 0 0 0 chr6 126709950 126709973 -55705269 + AT_rich Low_complexity Low_complexity 1 23 0 1907 149 0 3 chr6 126709978 126710273 -55704969 + AluJb SINE Alu 1 294 -18 328 175 288 31 chr6 126710346 126710506 -55704736 - L1ME LINE L1 -392 5729 5529 260 299 20 7 chr6 126710578 126710725 -55704517 - L1P LINE L1 -726 5425 5277 201 243 43 29 chr6 126710751 126710821 -55704421 + L3b LINE CR1 1123 1193 -390 26306 130 23 69 chr6 126711678 126716794 -55698448 + L1P LINE L1 12 4892 -1254 890 231 65 31 chr6 126766794 126766830 -55648412 - L1ME LINE L1 -1623 4523 4490 2529 63 0 0 chr6 126766830 126767132 -55648110 - AluY SINE Alu -9 302 1 890 231 65 31 chr6 126767132 126767420 -55647822 - L1ME LINE L1 -1656 4490 4188 22 0 0 0 chr6 126767436 126767458 -55647784 + AT_rich Low_complexity Low_complexity 1 22 0 274 289 106 92 chr6 126768356 126768498 -55646744 - MIR3 SINE MIR -50 158 15 910 166 78 88 chr6 126769965 126770182 -55645060 - MER58A DNA MER1_type -8 216 2 219 297 130 48 chr6 126770313 126770582 -55644660 - L2 LINE L2 -828 2486 2196 487 248 190 0 chr6 126770669 126770806 -55644436 - MIR3 SINE MIR -14 194 32 234 288 61 0 chr6 126770944 126771010 -55644232 + MIR SINE MIR 51 120 -142 250 204 0 0 chr6 126772759 126772808 -55642434 + MER4-int LTR ERV1 1117 1165 -5433 643 215 15 8 chr6 126776796 126776926 -55638316 - FLAM_A SINE Alu -2 131 1 1026 163 79 0 chr6 126777097 126777300 -55637942 + MER20 DNA MER1_type 1 219 0 1332 139 98 66 chr6 126777727 126777834 -55637408 - AluJo SINE Alu -29 283 181 6843 101 33 17 chr6 126777834 126778886 -55636356 - MER11C LTR ERVK 0 1071 3 1332 139 98 66 chr6 126778886 126779052 -55636190 - AluJo SINE Alu -131 181 1 302 202 84 76 chr6 126780264 126780383 -55634859 + L2 LINE L2 3102 3221 -92 5495 130 52 19 chr6 126780396 126781072 -55634170 - L1MA8 LINE L1 -7 6284 5632 1863 115 89 0 chr6 126781072 126781341 -55633901 - AluSg SINE Alu -17 293 1 5495 130 52 19 chr6 126781341 126782520 -55632722 - L1MA8 LINE L1 -659 5632 4365 270 291 138 14 chr6 126782524 126782871 -55632371 - L1P LINE L1 -2414 3732 3343 381 312 86 53 chr6 126783033 126783427 -55631815 - L1M4 LINE L1 -2985 3161 2755 434 300 31 51 chr6 126783613 126783870 -55631372 - L1M4 LINE L1 -3623 2523 2272 1465 218 110 48 chr6 126785735 126786216 -55629026 + MLT2B1 LTR ERVL 1 511 -9 1337 248 98 21 chr6 126786353 126786821 -55628421 + MLT1D LTR MaLR 1 504 -1 44403 36 3 1 chr6 126786883 126793028 -55622214 + L1PA3 LINE L1 1 6152 -3 267 54 0 0 chr6 126793064 126793101 -55622141 + (TG)n Simple_repeat Simple_repeat 1 37 0 378 252 19 9 chr6 126793682 126793789 -55621453 + LTR67 LTR ERVL 428 535 -22 509 221 88 15 chr6 126794127 126794263 -55620979 - MIR SINE MIR -1 261 116 600 250 138 87 chr6 126795021 126795528 -55619714 - MLT1G LTR MaLR -2 588 55 2343 94 3 0 chr6 126795894 126796202 -55619040 - AluSp SINE Alu -4 309 1 1189 271 34 18 chr6 126796253 126796692 -55618550 - L1ME2 LINE L1 -10 6154 5709 376 262 85 33 chr6 126796690 126797896 -55617346 - L1ME2 LINE L1 -1517 4629 3268 * 2141 221 100 6 chr6 126797908 126798631 -55616611 - L1ME2 LINE L1 -3246 2900 2110 22 0 0 0 chr6 126798639 126798661 -55616581 + AT_rich Low_complexity Low_complexity 1 22 0 440 125 14 0 chr6 126798790 126798862 -55616380 - L1MC1 LINE L1 -1 6332 6260 1456 188 23 4 chr6 126798862 126799123 -55616119 - MSTB LTR MaLR 0 426 161 988 119 0 30 chr6 126799161 126799329 -55615913 - L1MC1 LINE L1 -370 5963 5801 667 125 10 10 chr6 126799350 126799454 -55615788 - MSTB LTR MaLR -322 104 1 4979 135 59 28 chr6 126799455 126799724 -55615518 - L1MC1 LINE L1 -70 6263 6004 1992 105 54 0 chr6 126799724 126800001 -55615241 - AluSc SINE Alu -17 292 1 4979 135 59 28 chr6 126800001 126800233 -55615009 - L1MC1 LINE L1 -329 6004 5781 1451 182 87 46 chr6 126800233 126800601 -55614641 - MLT1B LTR MaLR -4 386 4 4979 135 59 28 chr6 126800601 126801035 -55614207 - L1MC1 LINE L1 -552 5781 5299 543 121 0 12 chr6 126801235 126801318 -55613924 - MER45A DNA AcHobo 0 178 97 1428 209 108 3 chr6 126801621 126801946 -55613296 + MLT1A1 LTR MaLR 1 359 -6 1012 194 28 28 chr6 126802081 126802292 -55612950 + MER58A DNA MER1_type 6 216 -8 2002 119 22 0 chr6 126802781 126803059 -55612183 + AluSx SINE Alu 1 284 -28 477 0 0 0 chr6 126803059 126803112 -55612130 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 322 271 13 73 chr6 126803301 126803385 -55611857 + MER5B DNA MER1_type 36 109 -69 1911 154 15 68 chr6 126803385 126803794 -55611448 + MLT1B LTR MaLR 2 388 -2 322 271 13 73 chr6 126803794 126803860 -55611382 + MER5B DNA MER1_type 109 177 -1 2389 86 0 7 chr6 126804055 126804358 -55610884 + AluSq SINE Alu 11 311 -2 678 309 21 63 chr6 126805060 126805491 -55609751 + L1MA9 LINE L1 1356 1768 -5728 11806 221 42 15 chr6 126806609 126807988 -55607254 + L1MA9 LINE L1 2255 3595 -3970 270 0 0 0 chr6 126807988 126808018 -55607224 + (CA)n Simple_repeat Simple_repeat 1 30 0 11806 221 42 15 chr6 126808018 126808828 -55606414 + L1MA9 LINE L1 3595 4381 -3184 1636 191 14 10 chr6 126808828 126809116 -55606126 + AluJo SINE Alu 6 294 -18 11806 221 42 15 chr6 126809116 126811308 -55603934 + L1MA9 LINE L1 4381 6700 -865 6596 119 36 18 chr6 126811321 126815960 -55599282 + L1PA7 LINE L1 12 4566 -1588 10288 52 76 7 chr6 126815960 126817246 -55597996 + SVA Other Other 12 1386 0 6596 119 36 18 chr6 126817246 126817999 -55597243 + L1PA7 LINE L1 4566 5304 -850 2551 57 0 3 chr6 126817999 126818299 -55596943 + AluY SINE Alu 1 299 -12 6596 119 36 18 chr6 126818299 126818729 -55596513 + L1PA7 LINE L1 5304 6153 -1 1972 196 49 22 chr6 126818731 126819225 -55596017 + L1MA9 LINE L1 6695 7201 -530 490 233 0 0 chr6 126819230 126819316 -55595926 + FRAM/FAM SINE Alu 1 82 -94 603 71 0 0 chr6 126819359 126819444 -55595798 + (GGGGA)n Simple_repeat Simple_repeat 5 89 0 2174 197 38 23 chr6 126819444 126819502 -55595740 + L1MA9 LINE L1 7194 7250 -481 1992 118 42 11 chr6 126819502 126819789 -55595453 + AluSx SINE Alu 1 296 -16 2174 197 38 23 chr6 126819789 126820253 -55594989 + L1MA9 LINE L1 7250 7724 -7 331 344 52 43 chr6 126820276 126820622 -55594620 + L1 LINE L1 1216 1564 -5932 3137 241 35 35 chr6 126821162 126823318 -55591924 + L1 LINE L1 2022 4179 -3386 9246 177 2 10 chr6 126823324 126824097 -55591145 + L1PA14 LINE L1 4 782 -6799 2249 112 3 13 chr6 126824097 126824402 -55590840 - AluY SINE Alu -9 302 1 9246 177 2 10 chr6 126824402 126825219 -55590023 + L1PA14 LINE L1 782 1581 -6000 1051 34 0 0 chr6 126825220 126825339 -55589903 - AluYb8 SINE Alu -19 299 181 16817 171 20 8 chr6 126825342 126831301 -55583941 + L1PA14 LINE L1 1570 7599 0 2165 185 34 48 chr6 126831304 126831946 -55583296 + L1 LINE L1 4172 4804 -2761 929 176 48 0 chr6 126831946 126832139 -55583103 + MSTB LTR MaLR 225 375 0 1741 191 10 0 chr6 126832182 126832486 -55582756 + AluJo SINE Alu 6 312 0 2478 147 81 2 chr6 126832486 126833015 -55582227 + L1 LINE L1 5782 6352 -1213 476 153 48 32 chr6 126832988 126833112 -55582130 + L1MA4 LINE L1 7593 7718 -1 * 501 290 115 32 chr6 126833666 126833980 -55581262 + LTR33 LTR ERVL 82 421 -100 305 246 48 63 chr6 126834173 126834299 -55580943 - MER91B DNA MER1_type -49 141 18 692 234 74 0 chr6 126835117 126835292 -55579950 + MER20 DNA MER1_type 2 189 -30 1310 224 48 27 chr6 126835706 126836077 -55579165 - MLT1B LTR MaLR -11 379 1 464 148 215 7 chr6 126836077 126836212 -55579030 - MER53 DNA DNA -26 163 1 1325 269 79 25 chr6 126836938 126837421 -55577821 - MLT1E LTR MaLR 0 593 85 230 288 105 68 chr6 126838274 126838569 -55576673 + L2 LINE L2 2561 2866 -448 2008 115 0 0 chr6 126838618 126838897 -55576345 + AluSx SINE Alu 27 305 -7 183 319 0 0 chr6 126839872 126839919 -55575323 - L2 LINE L2 -12 3301 3255 228 371 0 0 chr6 126840551 126840640 -55574602 + L2 LINE L2 569 657 -2657 692 284 87 5 chr6 126840669 126840887 -55574355 + MIR SINE MIR 23 258 -4 206 268 18 0 chr6 126841844 126841900 -55573342 + CT-rich Low_complexity Low_complexity 1 57 0 228 291 58 23 chr6 126842153 126842239 -55573003 + L2 LINE L2 2314 2402 -912 302 333 44 30 chr6 126842365 126842500 -55572742 + L2 LINE L2 2721 2857 -457 189 293 0 0 chr6 126842834 126842875 -55572367 + L2 LINE L2 3143 3183 -89 22 0 0 0 chr6 126843420 126843442 -55571800 + AT_rich Low_complexity Low_complexity 1 22 0 418 346 45 33 chr6 126844150 126844393 -55570849 - MIR SINE MIR -13 249 4 1407 171 0 64 chr6 126845057 126845233 -55570009 - AluJb SINE Alu -9 303 150 2405 85 3 0 chr6 126845233 126845528 -55569714 - AluSp SINE Alu -17 296 1 1407 171 0 64 chr6 126845528 126845632 -55569610 - AluJb SINE Alu -162 150 41 185 269 39 0 chr6 126845668 126845720 -55569522 + L2 LINE L2 3245 3298 -15 876 274 71 7 chr6 126846374 126846670 -55568572 + MLT1J2 LTR MaLR 3 317 -133 397 298 92 0 chr6 126847254 126847385 -55567857 + L2 LINE L2 3128 3270 -2 30 69 0 0 chr6 126847930 126847988 -55567254 + AT_rich Low_complexity Low_complexity 1 58 0 753 195 7 26 chr6 126848052 126848206 -55567036 - FRAM SINE Alu -14 152 2 1565 226 57 44 chr6 126848419 126848875 -55566367 + MLT1C LTR MaLR 6 467 0 3016 209 29 37 chr6 126849990 126850958 -55564284 - L1ME1 LINE L1 -44 6122 5163 284 286 201 45 chr6 126851032 126851193 -55564049 + MIR SINE MIR 3 210 -52 198 0 0 0 chr6 126851193 126851215 -55564027 + (TG)n Simple_repeat Simple_repeat 2 23 0 284 286 201 45 chr6 126851215 126851277 -55563965 + MIR SINE MIR 210 261 -1 719 237 92 50 chr6 126851936 126852198 -55563044 + MLT1L LTR MaLR 120 392 -223 312 272 150 12 chr6 126853420 126853593 -55561649 - L1ME4a LINE L1 -81 6040 5844 351 282 92 18 chr6 126853664 126853827 -55561415 - L1ME4a LINE L1 -395 5726 5552 883 200 0 6 chr6 126853832 126854002 -55561240 + AluJb SINE Alu 140 308 -4 364 331 62 24 chr6 126854004 126854294 -55560948 - L1ME4a LINE L1 -2249 5559 5259 196 301 151 21 chr6 126854512 126854605 -55560637 + L2 LINE L2 3151 3255 -17 1656 163 14 7 chr6 126854806 126855099 -55560143 - MLT1A1 LTR MaLR -69 398 1 2813 7 0 0 chr6 126855350 126855654 -55559588 - AluYa5 SINE Alu -7 304 1 5082 107 7 1 chr6 126856346 126857072 -55558170 + L1PA13 LINE L1 5367 6096 -67 422 230 191 0 chr6 126857214 126857340 -55557902 + MIR SINE MIR 8 157 -105 211 214 180 22 chr6 126857392 126857481 -55557761 + MIR SINE MIR 160 262 0 317 234 215 29 chr6 126857609 126857814 -55557428 + L1ME3A LINE L1 5705 5947 -223 325 274 15 119 chr6 126857942 126858143 -55557099 - MLT1I LTR MaLR -147 262 83 695 313 149 12 chr6 126859682 126860011 -55555231 + LTR16A LTR ERVL 77 450 0 937 250 64 4 chr6 126861230 126861466 -55553776 + MIR SINE MIR 13 262 0 828 86 0 0 chr6 126863627 126863743 -55551499 - L1PA8 LINE L1 -5 6167 6052 540 173 93 13 chr6 126863755 126863905 -55551337 - Tigger2 DNA MER2_type -166 2552 2391 1995 125 7 10 chr6 126863907 126864202 -55551040 - Tigger2 DNA MER2_type -1965 753 460 25 0 0 0 chr6 126864222 126864247 -55550995 + AT_rich Low_complexity Low_complexity 1 25 0 38424 75 5 41 chr6 126864270 126870653 -55544589 - L1PA5 LINE L1 -1 6153 11 28928 127 10 27 chr6 126870667 126877064 -55538178 - L1PA8 LINE L1 -104 6383 6 1841 138 64 3 chr6 126877124 126877407 -55537835 - AluSx SINE Alu -11 301 2 27 39 0 19 chr6 126878517 126878549 -55536693 + AT_rich Low_complexity Low_complexity 1 33 -18 2807 6 3 3 chr6 126878549 126878860 -55536382 - AluYa5 SINE Alu 0 311 1 27 39 0 19 chr6 126878860 126878879 -55536363 + AT_rich Low_complexity Low_complexity 33 51 0 214 295 33 0 chr6 126880063 126880124 -55535118 - L2 LINE L2 -8 3305 3243 263 385 58 16 chr6 126880167 126880546 -55534696 + L1MEc LINE L1 35 429 -5967 1062 185 12 58 chr6 126880614 126880873 -55534369 - MLT1B LTR MaLR -143 247 1 1003 249 84 67 chr6 126880891 126881534 -55533708 + L1MEc LINE L1 1587 2240 -4156 1591 196 12 20 chr6 126881594 126881935 -55533307 - MLT1B LTR MaLR 0 390 53 287 288 49 10 chr6 126881965 126882067 -55533175 + MLT1G LTR MaLR 28 138 -419 920 242 19 26 chr6 126882090 126882359 -55532883 + L1ME2 LINE L1 5779 6045 -119 2319 138 34 58 chr6 126882371 126882784 -55532458 - MSTB1 LTR MaLR 0 432 30 1593 171 52 7 chr6 126882854 126883164 -55532078 - MLT1D LTR MaLR -2 503 180 1417 215 96 9 chr6 126883201 126883546 -55531696 - MSTD LTR MaLR 0 396 23 7036 41 0 1 chr6 126883547 126884395 -55530847 + L1PA5 LINE L1 5302 6148 -6 482 208 63 88 chr6 126884483 126884642 -55530600 - MLT1D LTR MaLR -471 155 1 202 238 0 79 chr6 126884654 126884717 -55530525 - L2 LINE L2 -5 3308 3251 464 266 122 0 chr6 126884736 126884875 -55530367 + L2 LINE L2 3158 3313 0 1163 124 4 66 chr6 126886446 126886672 -55528570 - L1PA16 LINE L1 0 6166 5955 1451 203 59 0 chr6 126886689 126886979 -55528263 - AluJb SINE Alu -5 307 1 470 127 0 0 chr6 126887300 126887379 -55527863 - AluSp/q SINE Alu -5 308 230 1565 131 0 0 chr6 126887411 126887625 -55527617 + AluSx SINE Alu 1 214 -98 1591 196 12 20 chr6 126887735 126888076 -55527166 + MLT1B LTR MaLR 53 390 0 1029 246 83 62 chr6 126888136 126888777 -55526465 - L1MEc LINE L1 -4156 2240 1587 1062 185 12 58 chr6 126888795 126889054 -55526188 + MLT1B LTR MaLR 1 247 -143 263 385 58 16 chr6 126889122 126889501 -55525741 - L1MEc LINE L1 -5967 429 35 214 295 33 0 chr6 126889544 126889605 -55525637 + L2 LINE L2 3243 3305 -8 2351 68 3 3 chr6 126890808 126891119 -55524123 + AluYa5 SINE Alu 1 311 0 481 275 54 20 chr6 126891574 126891723 -55523519 - MIR SINE MIR -54 208 55 476 353 22 0 chr6 126892246 126892382 -55522860 - L2 LINE L2 0 3272 3134 3411 163 29 3 chr6 126893707 126894290 -55520952 + Tigger1 DNA MER2_type 1 598 -1820 2658 104 2 13 chr6 126894302 126894697 -55520545 - Tigger1 DNA MER2_type -1426 992 602 6305 129 74 1 chr6 126894725 126895754 -55519488 + Tigger1 DNA MER2_type 1314 2417 -1 1299 169 39 4 chr6 126896690 126896969 -55518273 - L1MC3 LINE L1 -1 7784 7496 1228 296 8 0 chr6 126897003 126897364 -55517878 - L1MCb LINE L1 -5112 933 570 538 279 40 31 chr6 126897538 126897760 -55517482 - L2 LINE L2 -1641 1673 1450 1130 85 6 0 chr6 126898591 126898755 -55516487 + L1MA5 LINE L1 6093 6257 -43 12427 177 31 50 chr6 126898756 126902094 -55513148 + L1MA4 LINE L1 16 3137 -3345 1661 168 46 7 chr6 126902094 126902379 -55512863 + AluJb SINE Alu 1 296 -16 12427 177 31 50 chr6 126902379 126905655 -55509587 + L1MA4 LINE L1 3137 6476 -6 318 132 0 0 chr6 126905671 126905724 -55509518 + L1MA5A LINE L1 6243 6295 -2 25 83 0 0 chr6 126905922 126905982 -55509260 + AT_rich Low_complexity Low_complexity 1 60 0 1040 274 118 14 chr6 126906113 126906470 -55508772 + MLT1J LTR MaLR 12 405 -106 1131 257 44 47 chr6 126906602 126906941 -55508301 - MLT1H LTR MaLR -200 349 12 765 200 27 7 chr6 126907601 126907751 -55507491 - Tigger3(Golem) DNA MER2_type 0 3037 2885 473 190 0 0 chr6 126907750 126907829 -55507413 - Tigger3(Golem) DNA MER2_type -2881 148 70 * 2183 57 11 0 chr6 126907831 126908094 -55507148 - AluY SINE Alu -10 301 36 1112 207 15 0 chr6 126908094 126908297 -55506945 - MER20 DNA MER1_type -13 206 1 29 47 0 0 chr6 126908558 126908601 -55506641 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 126908891 126908916 -55506326 + AT_rich Low_complexity Low_complexity 1 25 0 4336 237 29 134 chr6 126908990 126910811 -55504431 + L1M2 LINE L1 6 1634 -4647 * 9626 184 35 45 chr6 126910806 126911044 -55504198 + L1M2 LINE L1 2406 2645 -3705 207 0 0 0 chr6 126911044 126911067 -55504175 + (TA)n Simple_repeat Simple_repeat 2 24 0 9626 184 35 45 chr6 126911067 126912017 -55503225 + L1M2 LINE L1 2645 3602 -2748 313 51 0 0 chr6 126912017 126912056 -55503186 + MADE1 DNA Mariner 1 39 -41 9626 184 35 45 chr6 126912056 126913222 -55502020 + L1M2 LINE L1 3602 4777 -1573 981 304 20 21 chr6 126913241 126913600 -55501642 + L1MC1 LINE L1 5960 6311 -22 3993 166 32 2 chr6 126913743 126914748 -55500494 + L1M2 LINE L1 4754 5789 -706 546 311 31 34 chr6 126914751 126915106 -55500136 + L1M2 LINE L1 7 1086 -6499 5144 215 46 13 chr6 126916486 126918359 -55496883 + L1PA8A LINE L1 1532 3495 -3302 1665 150 169 68 chr6 126918359 126918726 -55496516 - MER4A LTR ERV1 0 664 261 545 122 89 0 chr6 126918726 126918816 -55496426 - MER4A LTR ERV1 -566 98 1 6028 108 48 40 chr6 126918823 126919872 -55495370 - MER4A-int LTR ERV1 -2 6596 5540 * 6805 114 63 17 chr6 126919867 126921059 -55494183 - MER4A-int LTR ERV1 -1208 5390 4144 18765 44 2 1 chr6 126921059 126924174 -55491068 - L1PA4 LINE L1 0 6155 3038 16208 53 1 2 chr6 126924174 126926230 -55489012 + L1PA4 LINE L1 987 3039 -3107 2404 114 51 70 chr6 126926230 126926820 -55488422 - MER4A-int LTR ERV1 -2446 4152 3552 2091 112 0 3 chr6 126926820 126927135 -55488107 - AluY SINE Alu 0 311 8 2404 114 51 70 chr6 126927135 126927392 -55487850 - MER4A-int LTR ERV1 -3046 3552 2737 1441 161 58 0 chr6 126927392 126927635 -55487607 + LTR8 LTR ERV1 1 257 -434 3735 77 78 68 chr6 126927635 126927819 -55487423 - MER4-int LTR ERV1 -4103 2495 2314 2270 97 3 0 chr6 126927819 126928117 -55487125 + AluSg SINE Alu 1 299 -11 3735 77 78 68 chr6 126928117 126928650 -55486592 - MER4-int LTR ERV1 -4284 2314 1771 1428 70 11 155 chr6 126928648 126928995 -55486247 - MER4-int LTR ERV1 -4266 1268 503 * 238 178 0 44 chr6 126929016 126929061 -55486181 - LTR49 LTR ERV1 -282 313 271 292 104 0 21 chr6 126929119 126929167 -55486075 - MER4-int LTR ERV1 -5799 799 753 3236 210 4 11 chr6 126929179 126929937 -55485305 + L1PA8A LINE L1 3490 4242 -2555 1163 187 13 0 chr6 126929938 126930168 -55485074 + L1PA8A LINE L1 4504 4736 -2061 5299 196 43 13 chr6 126930176 126932110 -55483132 + L1PA8A LINE L1 4812 6781 -1 1143 133 28 0 chr6 126932194 126932374 -55482868 + MSTB LTR MaLR 3 187 -239 2168 123 0 3 chr6 126932378 126932679 -55482563 + THE1B LTR MaLR 65 364 0 334 34 0 296 chr6 126932709 126932745 -55482497 - THE1B LTR MaLR -302 62 64 2071 146 0 0 chr6 126932745 126933053 -55482189 + AluSx SINE Alu 5 312 0 334 34 0 296 chr6 126933053 126933104 -55482138 - THE1B LTR MaLR -299 65 1 10213 108 25 45 chr6 126933104 126933411 -55481831 - THE1B-int LTR MaLR 0 1580 1268 405 39 0 0 chr6 126933411 126933462 -55481780 + (TTA)n Simple_repeat Simple_repeat 3 53 0 10478 49 0 0 chr6 126933462 126935520 -55479722 - L1PA5 LINE L1 -18 6136 4079 10213 108 25 45 chr6 126935520 126936805 -55478437 - THE1B-int LTR MaLR -310 1270 19 2202 149 8 24 chr6 126936841 126937211 -55478031 - THE1B LTR MaLR 0 364 1 1136 166 35 46 chr6 126937213 126937472 -55477770 + L1MA7 LINE L1 6014 6269 -22 280 316 10 0 chr6 126938150 126938248 -55476994 + Charlie2 DNA MER1_type 50 148 -2714 572 184 0 10 chr6 126938308 126938406 -55476836 + LTR40b LTR ERVL 366 462 0 524 267 58 23 chr6 126938407 126938579 -55476663 + L2 LINE L2 3136 3313 0 641 298 40 36 chr6 126938931 126939156 -55476086 + MIR SINE MIR 26 251 -11 292 240 74 33 chr6 126940407 126940528 -55474714 - MER94 DNA DNA -7 127 2 358 292 95 36 chr6 126941783 126941951 -55473291 - L2 LINE L2 0 3313 3136 28 48 0 0 chr6 126942021 126942063 -55473179 + AT_rich Low_complexity Low_complexity 1 42 0 11319 79 4 2 chr6 126942599 126944932 -55470310 - L1PA7 LINE L1 -8 6146 3816 2133 198 101 55 chr6 126945273 126945587 -55469655 - L1MD3 LINE L1 -271 7514 7216 233 242 44 44 chr6 126945587 126945678 -55469564 - MLT1F1 LTR MaLR -442 125 35 2133 198 101 55 chr6 126945678 126946144 -55469098 - L1MD3 LINE L1 -569 7216 6615 279 324 94 45 chr6 126946177 126946624 -55468618 - L1MEd LINE L1 -5590 529 61 261 288 68 0 chr6 126946687 126946760 -55468482 - MIR SINE MIR -68 140 63 2484 84 3 0 chr6 126946843 126947153 -55468089 + AluSp SINE Alu 1 311 -2 1755 171 0 4 chr6 126947917 126948191 -55467051 + AluJb SINE Alu 1 273 -39 21 0 0 0 chr6 126948475 126948496 -55466746 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 126948647 126948676 -55466566 + AT_rich Low_complexity Low_complexity 1 29 0 1619 197 17 0 chr6 126948804 126949094 -55466148 - AluJo SINE Alu -17 295 1 255 61 0 0 chr6 126951358 126951391 -55463851 + (TG)n Simple_repeat Simple_repeat 2 34 0 1002 303 151 4 chr6 126951474 126952034 -55463208 + L2 LINE L2 2671 3313 0 246 263 12 12 chr6 126952077 126952157 -55463085 + LTR67 LTR ERVL 478 557 0 180 0 0 0 chr6 126952165 126952185 -55463057 + (T)n Simple_repeat Simple_repeat 1 20 0 524 147 31 31 chr6 126953007 126953136 -55462106 - L1MA4A LINE L1 0 6303 6175 233 51 0 77 chr6 126953169 126953208 -55462034 + MLT2A2 LTR ERVL 238 273 -180 3441 95 72 94 chr6 126953208 126953618 -55461624 - THE1C-int LTR MaLR -944 636 244 2206 107 17 0 chr6 126953618 126953909 -55461333 - AluSx SINE Alu -16 296 1 3441 95 72 94 chr6 126953909 126954148 -55461094 - THE1C-int LTR MaLR -1336 244 1 1512 96 5 5 chr6 126954148 126954357 -55460885 - THE1C LTR MaLR 0 375 167 276 221 0 13 chr6 126954357 126954434 -55460808 - L1M2 LINE L1 -4643 2206 2131 1742 192 3 13 chr6 126955277 126955589 -55459653 - AluJo SINE Alu -3 309 1 1402 185 37 3 chr6 126956077 126956375 -55458867 + L1MA9 LINE L1 6001 6308 -4 835 192 26 31 chr6 126956379 126956572 -55458670 + MER3 DNA MER1_type 18 209 0 297 266 0 0 chr6 126956885 126956949 -55458293 - MER113 DNA MER1_type? 0 521 458 22 35 0 0 chr6 126956964 126956993 -55458249 + AT_rich Low_complexity Low_complexity 1 29 0 2570 163 23 4 chr6 126957785 126958257 -55456985 + L1MB2 LINE L1 5450 5930 -241 993 124 69 51 chr6 126958259 126958476 -55456766 - MSTB1 LTR MaLR -1 431 211 246 315 14 0 chr6 126958484 126958557 -55456685 + L2 LINE L2 3227 3300 -13 180 0 0 0 chr6 126959290 126959310 -55455932 + (T)n Simple_repeat Simple_repeat 1 20 0 471 330 160 46 chr6 126959370 126960574 -55454668 - L2 LINE L2 -2 3270 1932 1847 175 124 68 chr6 126960586 126961071 -55454171 + MLT2B1 LTR ERVL 1 512 -8 322 287 113 72 chr6 126961098 126961204 -55454038 - L2 LINE L2 -1402 1912 1812 1671 189 7 7 chr6 126961204 126961489 -55453753 + AluJb SINE Alu 1 285 -27 423 0 0 0 chr6 126961489 126961536 -55453706 + (CA)n Simple_repeat Simple_repeat 2 48 0 192 40 0 0 chr6 126961535 126961560 -55453682 + (GA)n Simple_repeat Simple_repeat 2 26 0 322 287 113 72 chr6 126961536 126961717 -55453525 - L2 LINE L2 -1501 1813 1637 242 402 47 19 chr6 126962233 126962447 -55452795 - L2 LINE L2 -370 2944 2725 1200 307 94 56 chr6 126962505 126963761 -55451481 - L2 LINE L2 -787 2527 1224 342 334 174 28 chr6 126963774 126964235 -55451007 - L2 LINE L2 -2485 829 302 1260 318 74 59 chr6 126964253 126965274 -55449968 - L2 LINE L2 0 3272 2227 212 200 67 27 chr6 126965276 126965351 -55449891 - L2 LINE L2 0 3272 3195 1446 313 183 40 chr6 126965356 126965661 -55449581 - L2 LINE L2 -781 2533 2273 2277 179 29 5 chr6 126965661 126966075 -55449167 + MSTB LTR MaLR 3 426 0 1446 313 183 40 chr6 126966075 126966380 -55448862 - L2 LINE L2 -1041 2273 2013 3306 126 26 47 chr6 126966380 126966993 -55448249 - MER4A LTR ERV1 0 600 1 1446 313 183 40 chr6 126966993 126967217 -55448025 - L2 LINE L2 -1301 2013 1822 1799 213 42 15 chr6 126967217 126967620 -55447622 + MLT2D LTR ERVL 1 414 0 1446 313 183 40 chr6 126967620 126968030 -55447212 - L2 LINE L2 -1492 1822 1472 1628 140 112 38 chr6 126968030 126968344 -55446898 + MER1B DNA MER1_type 1 337 0 1446 313 183 40 chr6 126968344 126968510 -55446732 - L2 LINE L2 -1842 1472 918 488 305 91 22 chr6 126969578 126970026 -55445216 - HAL1 LINE L1 0 2507 1954 * 2878 236 50 6 chr6 126970024 126970919 -55444323 - L1M4 LINE L1 -1508 4638 3704 911 192 60 89 chr6 126970919 126971221 -55444021 + MER58B DNA MER1_type 45 337 -4 400 336 5 28 chr6 126971245 126971462 -55443780 - L1MEc LINE L1 -5554 842 631 382 350 21 2 chr6 126971698 126971931 -55443311 - L1MEc LINE L1 -5673 532 177 219 237 52 12 chr6 126972162 126972335 -55442907 + (TA)n Simple_repeat Simple_repeat 1 180 0 2805 13 0 0 chr6 126972388 126972695 -55442547 - AluYa5 SINE Alu -4 307 1 361 262 33 33 chr6 126972696 126972818 -55442424 - MIR SINE MIR -113 149 28 764 188 0 0 chr6 126974489 126974617 -55440625 - FLAM_A SINE Alu -5 128 1 339 44 0 0 chr6 126976551 126976596 -55438646 + (CCG)n Simple_repeat Simple_repeat 2 46 0 343 336 80 77 chr6 126976828 126977557 -55437685 - L1M2 LINE L1 -5444 1405 675 22 0 0 0 chr6 126977715 126977737 -55437505 + GC_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr6 126978703 126978744 -55436498 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr6 126980558 126980580 -55434662 + AT_rich Low_complexity Low_complexity 1 22 0 360 176 0 0 chr6 126980753 126980821 -55434421 + CT-rich Low_complexity Low_complexity 1 68 0 1641 179 0 35 chr6 126980829 126981119 -55434123 - AluJo SINE Alu -32 280 1 30 45 0 0 chr6 126983094 126983138 -55432104 + AT_rich Low_complexity Low_complexity 1 44 0 2043 134 3 22 chr6 126983143 126983457 -55431785 + AluSx SINE Alu 1 308 -4 492 18 0 0 chr6 126983459 126983516 -55431726 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 221 255 0 0 chr6 126983904 126983951 -55431291 - L2 LINE L2 -5 3308 3262 22 0 0 0 chr6 126984266 126984288 -55430954 + AT_rich Low_complexity Low_complexity 1 22 0 317 346 82 35 chr6 126984967 126985308 -55429934 - L2 LINE L2 -451 2863 2507 206 274 39 0 chr6 126985323 126985374 -55429868 + L2 LINE L2 3252 3304 -9 958 208 118 10 chr6 126985464 126985753 -55429489 + MER5C DNA MER1_type 5 324 0 2138 283 150 31 chr6 126986232 126988019 -55427223 - L2 LINE L2 -2 3311 1267 1710 171 10 17 chr6 126988271 126988563 -55426679 - AluJo SINE Alu -20 292 3 192 336 0 52 chr6 126988667 126988801 -55426441 + MIR SINE MIR 103 229 -33 245 289 10 10 chr6 126989028 126989132 -55426110 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 25 31 0 0 chr6 126990285 126990317 -55424925 + AT_rich Low_complexity Low_complexity 1 32 0 342 0 0 0 chr6 126990423 126990461 -55424781 + (CA)n Simple_repeat Simple_repeat 2 39 0 232 170 0 0 chr6 126991875 126991922 -55423320 - L1PB4 LINE L1 -2 6154 6108 325 223 64 0 chr6 126992103 126992197 -55423045 + MLT1L LTR MaLR 505 604 -11 269 169 17 0 chr6 126992845 126992904 -55422338 + (TA)n Simple_repeat Simple_repeat 2 61 0 322 266 0 43 chr6 126992942 126993036 -55422206 - L1MC4 LINE L1 -1339 6703 6614 * 336 255 0 43 chr6 126992960 126993054 -55422188 + L1MC4 LINE L1 6614 6703 -1339 * 343 234 0 43 chr6 126993038 126993132 -55422110 - L1MC4 LINE L1 -1339 6703 6614 321 315 0 0 chr6 126993064 126993153 -55422089 + L1MC4 LINE L1 6614 6702 -1340 * 298 111 0 48 chr6 126993153 126993216 -55422026 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 233 247 12 24 chr6 126993221 126993306 -55421936 + L1MC4 LINE L1 6614 6697 -1345 459 281 0 0 chr6 126993354 126993731 -55421511 + (CATATA)n Simple_repeat Simple_repeat 1 377 0 242 250 36 0 chr6 126993748 126993832 -55421410 - L1MC4 LINE L1 -1341 6701 6615 233 216 31 52 chr6 126993835 126993932 -55421310 - L1MC4 LINE L1 -1339 6703 6609 606 262 40 36 chr6 126994723 126994971 -55420271 + MLT1L LTR MaLR 367 615 0 224 254 45 0 chr6 126995290 126995357 -55419885 - L2 LINE L2 0 3272 3203 1846 141 61 25 chr6 126995439 126995801 -55419441 + THE1C LTR MaLR 1 375 0 198 171 0 0 chr6 126995857 126995898 -55419344 + (TG)n Simple_repeat Simple_repeat 1 41 0 432 340 128 3 chr6 126995926 126996247 -55418995 - L2 LINE L2 -339 2975 2615 601 268 56 6 chr6 126996388 126996567 -55418675 + MIR SINE MIR 75 262 0 408 146 146 62 chr6 126996992 126997088 -55418154 + L2 LINE L2 3210 3313 0 3541 101 4 4 chr6 126998225 126998722 -55416520 + LOR1a LTR ERV1 1 497 0 189 0 0 0 chr6 126998736 126998757 -55416485 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 408 111 0 0 chr6 126998791 126998854 -55416388 + (TG)n Simple_repeat Simple_repeat 2 64 0 192 40 0 0 chr6 126998856 126998881 -55416361 + (GA)n Simple_repeat Simple_repeat 2 26 0 2026 160 0 6 chr6 126998883 126999227 -55416015 - MLT2C1 LTR ERVL -55 342 1 542 254 178 0 chr6 126999279 126999464 -55415778 - MIR SINE MIR -26 236 19 475 240 126 17 chr6 126999516 126999691 -55415551 - MLT1K LTR MaLR -30 558 365 303 291 39 19 chr6 127000315 127000418 -55414824 + MIR SINE MIR 80 184 -78 216 0 0 0 chr6 127000965 127000989 -55414253 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1525 169 17 114 chr6 127001279 127001681 -55413561 + MLT1A1 LTR MaLR 1 363 -2 460 248 147 16 chr6 127001704 127001833 -55413409 - MIR SINE MIR -112 150 5 1993 131 3 3 chr6 127004190 127004495 -55410747 + AluSq SINE Alu 1 305 0 2990 187 16 52 chr6 127004640 127005315 -55409927 + MER82 DNA MER2_type 1 651 -2 314 347 80 17 chr6 127006388 127006564 -55408678 - MIR SINE MIR -48 214 28 1090 184 49 49 chr6 127008365 127008609 -55406633 - AluJo SINE Alu 0 312 69 219 69 0 0 chr6 127009760 127009789 -55405453 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1057 140 11 0 chr6 127009816 127009995 -55405247 + L1M2 LINE L1 5600 5780 -511 1836 182 0 22 chr6 127009996 127010315 -55404927 - AluJb SINE Alu 0 312 1 302 290 90 22 chr6 127011445 127011614 -55403628 - MIR SINE MIR -58 150 5 22 35 0 0 chr6 127011783 127011812 -55403430 + AT_rich Low_complexity Low_complexity 1 29 0 492 18 0 0 chr6 127013943 127014000 -55401242 + (CA)n Simple_repeat Simple_repeat 2 58 0 547 278 11 34 chr6 127014316 127014492 -55400750 - L2 LINE L2 -3 3310 3139 251 253 81 35 chr6 127014756 127014843 -55400399 - MIR SINE MIR -51 211 121 196 322 55 77 chr6 127015714 127015897 -55399345 - MIR SINE MIR -73 189 11 2229 261 132 18 chr6 127016263 127017408 -55397834 - L2 LINE L2 0 3313 2042 197 394 14 0 chr6 127017910 127017981 -55397261 - L2 LINE L2 0 3272 3201 222 367 60 33 chr6 127018155 127018305 -55396937 - L2 LINE L2 -186 3086 2933 364 304 36 14 chr6 127018408 127018546 -55396696 - MIR SINE MIR -35 227 87 222 128 0 0 chr6 127021541 127021580 -55393662 + (TG)n Simple_repeat Simple_repeat 2 40 0 216 204 20 0 chr6 127022761 127022810 -55392432 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 2179 127 0 10 chr6 127023622 127023936 -55391306 - AluSq SINE Alu -2 311 1 7445 123 34 5 chr6 127026980 127028174 -55387068 + Tigger3b DNA MER2_type 2 1230 -1 652 301 84 21 chr6 127028365 127028604 -55386638 + MIR SINE MIR 6 259 -3 338 293 142 24 chr6 127029176 127029388 -55385854 - MIR SINE MIR -6 256 20 357 350 8 0 chr6 127029440 127029557 -55385685 - L2 LINE L2 -21 3251 3134 208 291 26 43 chr6 127032271 127032388 -55382854 + MIR SINE MIR 23 137 -71 322 189 11 78 chr6 127032416 127032506 -55382736 + MER63 DNA MER1_type 39 748 -88 337 262 47 54 chr6 127032565 127032714 -55382528 + MIR SINE MIR 115 262 0 2325 107 11 93 chr6 127033168 127033607 -55381635 - L1PA7 LINE L1 -2 6152 5750 3015 159 10 0 chr6 127034115 127034606 -55380636 - LOR1a LTR ERV1 0 497 2 1623 156 46 23 chr6 127035025 127035119 -55380123 - MLT1B LTR MaLR 0 467 377 4445 113 77 71 chr6 127035119 127035940 -55379302 + LTR12 LTR ERV1 1 826 0 1623 156 46 23 chr6 127035940 127036301 -55378941 - MLT1B LTR MaLR -90 377 1 340 303 117 19 chr6 127038065 127038227 -55377015 + MER5A DNA MER1_type 12 189 0 1330 178 46 12 chr6 127038863 127039104 -55376138 + AluJo SINE Alu 44 292 -20 601 216 66 6 chr6 127039187 127039354 -55375888 - L1ME LINE L1 -419 5702 5526 2431 133 8 3 chr6 127039934 127040296 -55374946 - THE1B LTR MaLR 0 364 1 10211 120 33 10 chr6 127040296 127041840 -55373402 - THE1B-int LTR MaLR 0 1580 1 2742 91 6 3 chr6 127041842 127042203 -55373039 - THE1B LTR MaLR -2 362 1 1797 150 25 33 chr6 127042385 127042745 -55372497 - MLT1B LTR MaLR -10 380 24 856 159 62 0 chr6 127042901 127043104 -55372138 - FRAM SINE Alu 0 211 1 865 224 83 15 chr6 127043427 127043632 -55371610 + MIR SINE MIR 44 262 0 230 214 0 0 chr6 127043718 127043760 -55371482 + L2 LINE L2 3231 3272 0 1842 177 116 15 chr6 127043963 127044438 -55370804 - Charlie1b DNA MER1_type 0 523 1 646 240 162 42 chr6 127046100 127046558 -55368684 - L1ME4a LINE L1 -8 6113 5601 1030 93 0 0 chr6 127046562 127046702 -55368540 - AluSg/x SINE Alu 0 312 173 332 342 68 19 chr6 127046702 127046968 -55368274 - L1ME4a LINE L1 -524 5597 5319 21 71 0 0 chr6 127047308 127047350 -55367892 + AT_rich Low_complexity Low_complexity 1 42 0 693 196 92 0 chr6 127048108 127048281 -55366961 + MER53 DNA DNA 1 189 0 296 332 172 35 chr6 127049924 127050243 -55364999 - L2 LINE L2 -1 3312 2950 209 213 145 138 chr6 127050498 127050780 -55364462 - L2 LINE L2 -892 2422 2139 24 0 0 0 chr6 127051488 127051512 -55363730 + AT_rich Low_complexity Low_complexity 1 24 0 2202 104 0 7 chr6 127052682 127052981 -55362261 + AluSg SINE Alu 11 307 -3 1425 150 77 21 chr6 127053569 127053651 -55361591 + MER58B DNA MER1_type 37 113 -2307 1803 84 50 0 chr6 127053651 127053890 -55361352 + AluY SINE Alu 50 300 -11 1425 150 77 21 chr6 127053890 127054094 -55361148 + MER58B DNA MER1_type 113 339 -2 478 318 83 5 chr6 127054106 127054298 -55360944 - MIR SINE MIR -54 208 2 351 283 121 42 chr6 127056507 127056673 -55358569 - L1ME4a LINE L1 -1276 4870 4692 * 482 222 9 24 chr6 127056663 127056891 -55358351 + CT-rich Low_complexity Low_complexity 1 224 0 308 315 45 0 chr6 127057477 127057588 -55357654 + L2 LINE L2 3156 3271 -1 1120 116 0 6 chr6 127058155 127058328 -55356914 + L1MB3 LINE L1 5994 6165 -18 28 0 0 0 chr6 127059514 127059542 -55355700 + AT_rich Low_complexity Low_complexity 1 28 0 236 229 90 33 chr6 127060815 127060937 -55354305 - L1ME4a LINE L1 -186 5935 5807 259 197 158 53 chr6 127062828 127062904 -55352338 - L2 LINE L2 -1 3312 3229 2989 203 31 15 chr6 127063242 127063858 -55351384 - MLT1E2 LTR MaLR 0 626 1 486 262 64 44 chr6 127063893 127064070 -55351172 - MIR SINE MIR -62 146 18 230 365 37 79 chr6 127064374 127064615 -55350627 - L3 LINE CR1 -20 1557 1327 363 217 198 9 chr6 127064715 127064821 -55350421 + L2 LINE L2 3187 3312 -1 2097 94 0 7 chr6 127064858 127065161 -55350081 + AluSg SINE Alu 21 310 0 535 168 0 0 chr6 127065695 127065790 -55349452 + L1PA3 LINE L1 2 96 -6365 * 19618 39 9 3 chr6 127065757 127068305 -55346937 + L1PA3 LINE L1 893 3455 -3006 18618 36 1 0 chr6 127068958 127071991 -55343251 + L1PA3 LINE L1 3437 6470 0 330 235 20 41 chr6 127072988 127073086 -55342156 + MIR SINE MIR 120 215 -47 436 206 10 10 chr6 127073092 127073194 -55342048 + MER69 DNA AcHobo 2424 2525 -1 1516 181 55 17 chr6 127073935 127074228 -55341014 - AluJo SINE Alu -8 304 1 254 324 166 29 chr6 127074228 127074469 -55340773 - L2 LINE L2 -10 3303 3030 37 90 0 0 chr6 127075326 127075426 -55339816 + AT_rich Low_complexity Low_complexity 1 100 0 1812 186 0 19 chr6 127075712 127076029 -55339213 + AluJo SINE Alu 1 311 -1 861 158 158 10 chr6 127076425 127076765 -55338477 - MSTC LTR MaLR 0 428 1 236 211 0 0 chr6 127076767 127076805 -55338437 - L2 LINE L2 -29 3243 3206 645 182 158 82 chr6 127077023 127077442 -55337800 - MLT1E1 LTR MaLR -2 652 214 885 74 0 0 chr6 127077508 127077629 -55337613 + L1MA4 LINE L1 6173 6293 -7 385 303 0 0 chr6 127077678 127077787 -55337455 - MLT1E1 LTR MaLR -543 111 3 497 252 9 18 chr6 127078501 127078612 -55336630 - L2 LINE L2 0 3272 3163 235 258 0 0 chr6 127078939 127079000 -55336242 - MIR SINE MIR -97 111 50 733 196 7 7 chr6 127080295 127080443 -55334799 + MER20 DNA MER1_type 2 149 -70 * 1995 150 21 24 chr6 127080441 127080577 -55334665 - MER1B DNA MER1_type -2373 339 204 2203 131 126 8 chr6 127080577 127080958 -55334284 - MSTA LTR MaLR -2 426 1 1995 150 21 24 chr6 127080958 127081160 -55334082 - MER1B DNA MER1_type -2508 204 2 364 185 0 37 chr6 127081160 127081238 -55334004 + MER20 DNA MER1_type 142 216 -3 184 256 0 0 chr6 127081944 127081987 -55333255 + MIR SINE MIR 74 116 -92 24 32 0 0 chr6 127082862 127082893 -55332349 + AT_rich Low_complexity Low_complexity 1 31 0 548 262 140 9 chr6 127083401 127083615 -55331627 + MIR SINE MIR 10 251 -11 2079 131 42 25 chr6 127084273 127084631 -55330611 + THE1B LTR MaLR 1 364 0 2248 105 21 0 chr6 127084669 127085002 -55330240 - L1PA13 LINE L1 -5 6158 5819 189 314 36 129 chr6 127085200 127085340 -55329902 + L2 LINE L2 3142 3268 -4 230 355 79 13 chr6 127135867 127136019 -55279223 - L3b LINE CR1 -54 1529 1368 316 320 68 20 chr6 127136044 127136191 -55279051 - L2 LINE L2 -2 3311 3158 1137 201 94 59 chr6 127136294 127136668 -55278574 + L1MCa LINE L1 16 402 -6024 1254 238 123 32 chr6 127136670 127137254 -55277988 - L1MCa LINE L1 -5092 953 394 * 2017 173 106 11 chr6 127137248 127138009 -55277233 + L1MCa LINE L1 1217 2140 -4286 889 113 0 0 chr6 127138009 127138133 -55277109 + MER41C LTR ERV1 1 124 -430 923 100 0 0 chr6 127138233 127138400 -55276842 - AluSc SINE Alu 0 328 162 2078 128 61 6 chr6 127138401 127138745 -55276497 + MER41C LTR ERV1 192 554 0 1683 173 46 7 chr6 127138745 127139147 -55276095 + L1MCa LINE L1 2137 2478 -3948 1130 142 8 134 chr6 127139147 127139227 -55276015 + L1MC1 LINE L1 6097 6186 -147 1701 192 20 0 chr6 127139227 127139519 -55275723 - AluJo SINE Alu -14 298 1 1130 142 8 134 chr6 127139519 127139706 -55275536 + L1MC1 LINE L1 6186 6330 -3 475 188 0 10 chr6 127139704 127139805 -55275437 + L1MCa LINE L1 2553 2652 -3774 * 231 333 49 0 chr6 127139810 127139912 -55275330 - L3b LINE CR1 -344 1239 1133 569 284 76 15 chr6 127140179 127140376 -55274866 - MIR SINE MIR -50 212 4 1306 86 0 17 chr6 127140636 127140810 -55274432 - AluY SINE Alu -140 171 1 700 231 78 46 chr6 127141901 127142182 -55273060 - Charlie2b DNA MER1_type -1669 1113 824 595 285 58 42 chr6 127142224 127142536 -55272706 - Charlie2b DNA MER1_type -2465 317 1 431 323 73 27 chr6 127143040 127143300 -55271942 - L3 LINE CR1 -1 1576 1305 2664 250 33 6 chr6 127143783 127144471 -55270771 - L1ME1 LINE L1 -8 6158 5452 587 204 38 0 chr6 127144719 127144851 -55270391 - L1M2 LINE L1 -870 5442 5306 1257 102 6 0 chr6 127145712 127145879 -55269363 - AluSq SINE Alu -20 293 126 22 0 0 0 chr6 127147191 127147213 -55268029 + AT_rich Low_complexity Low_complexity 1 22 0 504 288 73 11 chr6 127147533 127147710 -55267532 - MIR SINE MIR -36 226 39 191 359 38 46 chr6 127147846 127147977 -55267265 - L3b LINE CR1 -157 1426 1297 25 0 0 0 chr6 127148204 127148229 -55267013 + AT_rich Low_complexity Low_complexity 1 25 0 518 323 46 10 chr6 127150308 127150503 -55264739 + MIR3 SINE MIR 1 202 -6 323 300 25 17 chr6 127152341 127152461 -55262781 + MIR SINE MIR 96 216 -46 10399 31 1 1 chr6 127152468 127153717 -55261525 - L1P2 LINE L1 -1282 4864 3616 4654 22 0 0 chr6 127153716 127154343 -55260899 + L1P2 LINE L1 4848 5474 -681 * 370 293 7 20 chr6 127154451 127154598 -55260644 - L2 LINE L2 -710 2604 2460 655 245 27 5 chr6 127154990 127155174 -55260068 + MIR SINE MIR 73 260 -2 220 158 0 26 chr6 127155208 127155246 -55259996 + MIR SINE MIR 114 150 -112 602 100 0 11 chr6 127155284 127155405 -55259837 + AluY SINE Alu 206 311 0 328 311 95 34 chr6 127156213 127156477 -55258765 - L1ME4a LINE L1 -238 5883 5604 1027 229 74 9 chr6 127157269 127157500 -55257742 + MIR SINE MIR 17 262 0 180 152 0 0 chr6 127159752 127159785 -55255457 + CT-rich Low_complexity Low_complexity 3 35 0 1736 159 10 7 chr6 127162916 127163212 -55252030 + AluJo SINE Alu 1 297 -15 216 0 0 0 chr6 127163861 127163885 -55251357 + (CA)n Simple_repeat Simple_repeat 2 25 0 2514 63 0 0 chr6 127164001 127164301 -55250941 - AluY SINE Alu -11 300 1 1631 158 60 40 chr6 127165127 127165157 -55250085 - MLT1A1 LTR MaLR -7 358 330 6882 115 52 22 chr6 127165157 127166351 -55248891 + Tigger3b DNA MER2_type 2 1231 0 1631 158 60 40 chr6 127166351 127166667 -55248575 - MLT1A1 LTR MaLR -35 330 5 302 196 0 113 chr6 127167159 127167256 -55247986 - L1MA9 LINE L1 -40 6272 6187 441 291 35 26 chr6 127168613 127168807 -55246435 - MIR SINE MIR -4 258 64 4529 64 19 0 chr6 127168893 127169487 -55245755 + L1PA10 LINE L1 5554 6158 -10 421 193 68 121 chr6 127169527 127169734 -55245508 + Charlie7 DNA MER1_type 1 196 -2416 248 217 0 33 chr6 127169769 127169829 -55245413 + T-rich Low_complexity Low_complexity 3 60 0 1232 192 45 60 chr6 127169830 127170163 -55245079 - L1MB8 LINE L1 -1 6177 5850 1582 242 106 50 chr6 127170218 127170986 -55244256 + Charlie7 DNA MER1_type 308 1118 -1494 250 286 118 17 chr6 127172435 127172554 -55242688 - MIR SINE MIR -62 146 16 219 330 54 36 chr6 127173898 127174010 -55241232 - L2 LINE L2 -1 3312 3199 810 285 16 0 chr6 127174888 127175144 -55240098 + MIR SINE MIR 3 262 0 213 254 239 0 chr6 127175216 127175283 -55239959 + L2 LINE L2 3160 3242 -30 26 50 0 0 chr6 127175637 127175677 -55239565 + AT_rich Low_complexity Low_complexity 1 40 0 488 332 105 24 chr6 127175847 127176353 -55238889 + L2 LINE L2 1841 2387 -927 1812 169 0 7 chr6 127176422 127176706 -55238536 - AluJb SINE Alu -30 282 1 201 355 73 47 chr6 127176996 127177230 -55238012 - L2 LINE L2 -213 3059 2820 410 257 152 24 chr6 127177257 127177467 -55237775 - MLT1H1 LTR MaLR -2 593 357 521 263 13 15 chr6 127177526 127177685 -55237557 - MLT1H1 LTR MaLR -359 183 32 222 282 24 73 chr6 127177758 127177882 -55237360 - L2 LINE L2 -557 2757 2640 1112 124 72 0 chr6 127178127 127178336 -55236906 + L1MA6 LINE L1 6077 6300 0 679 293 54 21 chr6 127179037 127179279 -55235963 + MIR SINE MIR 13 262 0 1426 195 68 62 chr6 127180170 127180555 -55234687 + MSTD LTR MaLR 1 387 -9 1627 97 0 72 chr6 127181129 127181322 -55233920 - MER4E LTR ERV1 -8 758 588 1860 59 25 0 chr6 127181322 127181591 -55233651 + L1PA6 LINE L1 5901 6175 0 1627 97 0 72 chr6 127181591 127181674 -55233568 - MER4E LTR ERV1 -178 588 501 338 286 101 66 chr6 127181887 127182114 -55233128 - MIR SINE MIR 0 262 28 2080 163 47 36 chr6 127182275 127182820 -55232422 - MLT2A2 LTR ERVL 0 554 1 2547 65 0 3 chr6 127183828 127184137 -55231105 + AluY SINE Alu 1 308 -3 2759 218 28 28 chr6 127186778 127187430 -55227812 + L1ME1 LINE L1 5507 6158 -8 2113 116 0 19 chr6 127187842 127188153 -55227089 - AluSx SINE Alu -7 305 1 315 65 0 0 chr6 127188295 127188341 -55226901 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr6 127189295 127189317 -55225925 + AT_rich Low_complexity Low_complexity 1 22 0 274 308 83 0 chr6 127189395 127189528 -55225714 + MIR SINE MIR 105 248 -14 227 342 13 65 chr6 127191949 127192104 -55223138 - L2 LINE L2 0 3272 3126 3535 138 25 35 chr6 127192185 127192793 -55222449 - MER7C DNA MER2_type 0 602 1 1964 118 37 19 chr6 127193168 127193490 -55221752 - MER44D DNA MER2_type -1 608 11 1972 151 0 7 chr6 127195327 127195631 -55219611 - AluJb SINE Alu -10 302 1 301 254 24 89 chr6 127195768 127195915 -55219327 - L1ME4a LINE L1 -90 6031 5895 1839 161 30 10 chr6 127195915 127196220 -55219022 - AluJb SINE Alu -1 311 1 301 254 24 89 chr6 127196220 127196241 -55219001 - L1ME4a LINE L1 -226 5895 5874 367 306 73 25 chr6 127196273 127196658 -55218584 - L1ME4a LINE L1 -719 5453 5355 244 200 350 0 chr6 127197958 127198038 -55217204 - MIR SINE MIR -74 188 81 712 295 38 56 chr6 127198040 127198433 -55216809 + L1MCc LINE L1 23 408 -6015 1221 254 101 34 chr6 127198876 127199848 -55215394 + L1MCc LINE L1 1129 2175 -4766 220 205 103 77 chr6 127199855 127199933 -55215309 - MIR SINE MIR -170 92 13 29 60 0 0 chr6 127199998 127200048 -55215194 + AT_rich Low_complexity Low_complexity 1 50 0 507 328 89 8 chr6 127200908 127201155 -55214087 - L3 LINE CR1 -139 1438 1172 601 217 17 0 chr6 127201268 127201383 -55213859 - FRAM SINE Alu -59 117 1 224 308 39 66 chr6 127201962 127202144 -55213098 - L3b LINE CR1 -302 1281 1105 2796 154 48 28 chr6 127204028 127204533 -55210709 - MLT2B2 LTR ERVL 0 515 1 1275 274 83 70 chr6 127204764 127205816 -55209426 + L1MCc LINE L1 1056 2005 -4834 306 308 31 57 chr6 127205924 127206083 -55209159 + L1MCc LINE L1 2277 2431 -4510 366 316 81 63 chr6 127206306 127206689 -55208553 + L1MCc LINE L1 2785 3174 -3948 305 301 35 0 chr6 127206908 127207021 -55208221 - L1M4 LINE L1 -2931 3215 3099 1418 166 50 63 chr6 127207093 127207395 -55207847 + AluJb SINE Alu 1 298 -14 429 70 0 0 chr6 127207409 127207466 -55207776 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 731 179 0 36 chr6 127207473 127207613 -55207629 + AluSq/x SINE Alu 1 135 -177 950 40 3 0 chr6 127208266 127208390 -55206852 + L1PA3 LINE L1 6005 6152 -3 21 0 0 0 chr6 127208390 127208411 -55206831 + AT_rich Low_complexity Low_complexity 1 21 0 234 292 90 0 chr6 127209083 127209172 -55206070 - MER94 DNA DNA -1 133 37 236 327 127 9 chr6 127210687 127210797 -55204445 + L2 LINE L2 3150 3272 0 277 232 58 87 chr6 127211059 127211197 -55204045 + L2 LINE L2 3099 3232 -40 394 257 0 50 chr6 127211535 127211636 -55203606 - L2 LINE L2 -3 3269 3174 2302 105 0 0 chr6 127213157 127213461 -55201781 + AluSq SINE Alu 1 304 -9 2608 166 28 22 chr6 127213551 127213801 -55201441 - L1M2 LINE L1 -495 5817 5570 1837 181 13 3 chr6 127213801 127214100 -55201142 - AluJb SINE Alu -10 302 1 2608 166 28 22 chr6 127214100 127214512 -55200730 - L1M2 LINE L1 -742 5570 5149 269 67 0 0 chr6 127214515 127214560 -55200682 - MER57A LTR ERV1 -2 401 357 2767 117 17 0 chr6 127214560 127214979 -55200263 - MER57B LTR ERV1 -8 426 1 1298 76 183 27 chr6 127214979 127215203 -55200039 - MER57B-int LTR ERV1 0 7537 7279 662 146 23 31 chr6 127215203 127215333 -55199909 - LTR54B LTR ERV1 -367 131 3 24342 84 31 23 chr6 127215336 127219113 -55196129 - MER57B-int LTR ERV1 -388 7149 3342 4664 122 19 30 chr6 127219103 127220006 -55195236 - MER57B-int LTR ERV1 -4342 1451 632 * 1236 60 6 6 chr6 127220007 127220175 -55195067 - MER57B-int LTR ERV1 -6577 960 793 * 4216 129 25 9 chr6 127220168 127220837 -55194405 - MER57B-int LTR ERV1 -6857 680 1 2588 145 12 2 chr6 127220841 127221262 -55193980 - MER57B LTR ERV1 -9 425 1 1394 179 3 20 chr6 127221264 127221323 -55193919 - L1M2 LINE L1 -1002 5144 5086 1922 141 0 24 chr6 127221323 127221646 -55193596 + AluSx SINE Alu 1 316 0 1394 179 3 20 chr6 127221646 127221887 -55193355 - L1M2 LINE L1 -1060 5086 4848 463 182 91 30 chr6 127221889 127222021 -55193221 + L1MA9 LINE L1 6135 6274 -38 180 150 0 50 chr6 127222097 127222157 -55193085 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 273 234 75 0 chr6 127223244 127223338 -55191904 + MER94 DNA DNA 6 106 -28 21 0 0 0 chr6 127223421 127223442 -55191800 + AT_rich Low_complexity Low_complexity 1 21 0 1581 254 29 19 chr6 127223781 127224202 -55191040 - MER70B LTR ERVL -150 428 4 602 220 90 53 chr6 127224368 127224668 -55190574 - LTR37A LTR ERV1 0 426 116 445 174 46 174 chr6 127224832 127225028 -55190214 - L1ME LINE L1 -436 5685 5515 528 16 0 0 chr6 127225035 127225096 -55190146 + (CATA)n Simple_repeat Simple_repeat 4 64 0 924 197 45 13 chr6 127225099 127225329 -55189913 - MER31B LTR ERV1 -10 651 220 328 254 62 31 chr6 127225608 127225738 -55189504 - MLT1J1 LTR MaLR -68 378 245 1091 130 0 156 chr6 127225757 127226026 -55189216 - AluJo SINE Alu 0 312 86 510 291 62 35 chr6 127226036 127226263 -55188979 - MLT1J2 LTR MaLR -217 233 1 266 276 0 46 chr6 127226371 127226458 -55188784 + L2 LINE L2 3190 3272 0 2813 154 56 35 chr6 127226496 127227101 -55188141 - L1MB8 LINE L1 -5 6173 5556 1938 167 0 7 chr6 127227105 127227405 -55187837 + AluJo SINE Alu 4 301 -11 806 296 80 34 chr6 127227490 127227841 -55187401 - L2 LINE L2 -20 3293 2927 851 296 73 58 chr6 127228720 127229350 -55185892 - L2 LINE L2 0 3313 2678 423 200 144 0 chr6 127229542 127229667 -55185575 - L1ME3A LINE L1 -1 6169 6027 3710 153 48 66 chr6 127230166 127231071 -55184171 + L1MB4 LINE L1 5281 6168 -12 363 169 0 0 chr6 127232963 127233034 -55182208 + (CA)n Simple_repeat Simple_repeat 1 71 0 242 236 106 41 chr6 127233488 127233611 -55181631 - L1ME4a LINE L1 -5 6116 5986 2054 123 38 7 chr6 127233633 127234265 -55180977 + MER39 LTR ERV1 5 707 0 25 31 0 0 chr6 127234531 127234563 -55180679 + AT_rich Low_complexity Low_complexity 1 32 0 236 322 76 38 chr6 127235444 127235708 -55179534 - MLT1K LTR MaLR -164 424 151 2036 145 43 11 chr6 127235758 127236130 -55179112 + MLT1B LTR MaLR 1 384 -6 1891 126 11 0 chr6 127237297 127237567 -55177675 + AluSq SINE Alu 1 273 -40 889 56 0 16 chr6 127237567 127237693 -55177549 + (GGAA)n Simple_repeat Simple_repeat 3 126 0 208 336 144 7 chr6 127237701 127237847 -55177395 - L3b LINE CR1 -63 1520 1355 334 275 148 29 chr6 127238249 127238607 -55176635 + L1ME3A LINE L1 5496 5906 -215 22 70 0 0 chr6 127238844 127238887 -55176355 + AT_rich Low_complexity Low_complexity 1 43 0 197 288 100 38 chr6 127239000 127239080 -55176162 - L2 LINE L2 0 3313 3229 1531 169 102 14 chr6 127240962 127241246 -55173996 - AluJo SINE Alu -3 309 1 237 65 0 0 chr6 127241355 127241386 -55173856 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 2637 171 38 13 chr6 127242003 127242536 -55172706 + L1MB4 LINE L1 5627 6172 -8 5799 48 7 22 chr6 127244308 127245066 -55170176 + L1PA5 LINE L1 5406 6151 -3 26 50 0 0 chr6 127245066 127245106 -55170136 + AT_rich Low_complexity Low_complexity 1 40 0 493 249 39 39 chr6 127245431 127245612 -55169630 + MER5A DNA MER1_type 6 186 -3 1511 174 97 190 chr6 127246539 127247905 -55167337 - L1MC5 LINE L1 -48 7913 6675 21 0 0 0 chr6 127248021 127248042 -55167200 + AT_rich Low_complexity Low_complexity 1 21 0 191 253 213 13 chr6 127248126 127248201 -55167041 + MIR SINE MIR 87 176 -86 378 255 216 29 chr6 127248201 127248409 -55166833 - MIR SINE MIR 0 262 16 832 191 6 6 chr6 127249277 127249434 -55165808 - AluJb SINE Alu -4 308 152 183 354 0 12 chr6 127249434 127249516 -55165726 - MIR SINE MIR -71 191 111 1832 144 9 11 chr6 127249516 127249864 -55165378 - L1MA4 LINE L1 -1714 4432 4086 * 4797 158 58 16 chr6 127249863 127250565 -55164677 + L1MA4 LINE L1 4439 5110 -1190 1792 60 0 14 chr6 127250565 127250782 -55164460 + AluY SINE Alu 84 297 -14 4797 158 58 16 chr6 127250782 127251376 -55163866 + L1MA4 LINE L1 5110 5677 -623 189 0 0 0 chr6 127251376 127251397 -55163845 + (CA)n Simple_repeat Simple_repeat 2 22 0 4797 158 58 16 chr6 127251397 127251880 -55163362 + L1MA4 LINE L1 5677 6300 0 263 297 11 11 chr6 127252671 127252762 -55162480 - L2 LINE L2 -213 3059 2969 1865 160 31 0 chr6 127253311 127253605 -55161637 + AluJb SINE Alu 1 303 -9 545 304 79 22 chr6 127254471 127254698 -55160544 + MIR SINE MIR 17 256 -6 2270 110 0 3 chr6 127254950 127255258 -55159984 + AluSc SINE Alu 1 307 -2 279 275 53 44 chr6 127255283 127255494 -55159748 + L1ME3 LINE L1 5725 5940 -230 1627 138 87 7 chr6 127255596 127255872 -55159370 + AluJb SINE Alu 6 303 -9 402 287 126 108 chr6 127256998 127257160 -55158082 - L2 LINE L2 -19 3253 3095 2212 104 13 0 chr6 127257160 127257459 -55157783 + AluSp SINE Alu 1 303 -10 402 287 126 108 chr6 127257459 127257630 -55157612 - L2 LINE L2 -177 3095 2914 526 142 7 149 chr6 127257781 127257863 -55157379 + MER5B DNA MER1_type 58 113 -65 2326 89 0 3 chr6 127257863 127258155 -55157087 - AluSc SINE Alu -18 291 1 526 142 7 149 chr6 127258155 127258213 -55157029 + MER5B DNA MER1_type 113 178 0 306 338 180 45 chr6 127258449 127258783 -55156459 - L2 LINE L2 0 3272 2894 1331 242 98 42 chr6 127259075 127259575 -55155667 + MLT1F LTR MaLR 6 533 -9 22 56 0 0 chr6 127260880 127260916 -55154326 + AT_rich Low_complexity Low_complexity 1 36 0 297 0 0 0 chr6 127262215 127262248 -55152994 + (CA)n Simple_repeat Simple_repeat 2 34 0 1854 139 31 3 chr6 127262291 127262579 -55152663 - AluJb SINE Alu -16 296 1 398 295 31 71 chr6 127263131 127263189 -55152053 - MLT1K LTR MaLR -8 580 521 519 211 0 78 chr6 127263189 127263350 -55151892 + FLAM_A SINE Alu 1 151 0 398 295 31 71 chr6 127263350 127263544 -55151698 - MLT1K LTR MaLR -67 521 337 392 331 31 15 chr6 127264024 127264154 -55151088 + L2 LINE L2 3127 3258 -14 412 314 74 69 chr6 127265340 127266003 -55149239 - L2 LINE L2 0 3272 2615 3539 194 77 11 chr6 127266348 127266469 -55148773 - L1MD2 LINE L1 -71 6288 6176 291 28 0 0 chr6 127266469 127266505 -55148737 + (TG)n Simple_repeat Simple_repeat 2 37 0 3539 194 77 11 chr6 127266505 127267230 -55148012 - L1MD2 LINE L1 -183 6176 5386 756 160 0 0 chr6 127268227 127268346 -55146896 + FLAM_C SINE Alu 6 124 -19 1242 180 37 37 chr6 127269118 127269412 -55145830 - MER66B LTR ERV1 0 486 193 196 252 87 10 chr6 127269541 127269644 -55145598 + L2 LINE L2 3112 3222 -91 196 227 23 0 chr6 127271572 127271616 -55143626 + MIR SINE MIR 109 153 -109 207 146 49 49 chr6 127271883 127271924 -55143318 + MIR SINE MIR 210 250 -12 191 325 65 39 chr6 127272118 127272195 -55143047 + MIR SINE MIR 22 100 -108 30 59 0 0 chr6 127272395 127272446 -55142796 + AT_rich Low_complexity Low_complexity 1 51 0 391 291 140 9 chr6 127272667 127273043 -55142199 + MARNA DNA Mariner 75 529 -57 2309 162 61 48 chr6 127273175 127273670 -55141572 + MLT1D LTR MaLR 5 505 0 1988 155 14 22 chr6 127273700 127274068 -55141174 + MLT1A1 LTR MaLR 1 365 0 739 231 123 36 chr6 127275002 127275279 -55139963 + L2 LINE L2 3009 3309 -4 419 325 170 24 chr6 127275277 127275566 -55139676 - L2 LINE L2 -8 3264 2934 * 2067 112 34 3 chr6 127275580 127275875 -55139367 + AluSx SINE Alu 1 304 -8 1378 145 5 5 chr6 127275894 127276101 -55139141 + AluJb SINE Alu 1 207 -105 652 163 30 0 chr6 127276215 127276350 -55138892 - L1MB1 LINE L1 -17 6172 6034 253 252 113 52 chr6 127276663 127276778 -55138464 - L2 LINE L2 0 3313 3192 1889 302 127 19 chr6 127276846 127277738 -55137504 - L2 LINE L2 -338 2976 1989 669 314 127 40 chr6 127277756 127278427 -55136815 - L2 LINE L2 -855 2459 1731 450 296 194 20 chr6 127278434 127278974 -55136268 - L2 LINE L2 -1145 2169 1536 347 244 12 12 chr6 127279072 127279154 -55136088 + L2 LINE L2 3232 3313 0 1691 178 11 0 chr6 127279197 127279466 -55135776 - AluJo SINE Alu -39 273 2 418 284 46 1 chr6 127280066 127280190 -55135052 + MIR SINE MIR 35 163 -63 252 94 0 0 chr6 127280195 127280227 -55135015 + L2 LINE L2 3225 3256 -16 180 111 0 0 chr6 127280475 127280502 -55134740 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 333 0 0 0 chr6 127281094 127281131 -55134111 + (TG)n Simple_repeat Simple_repeat 1 37 0 22 35 0 0 chr6 127281469 127281498 -55133744 + AT_rich Low_complexity Low_complexity 1 29 0 489 123 0 0 chr6 127281616 127281689 -55133553 - Tigger5 DNA MER2_type 0 2323 2251 285 164 18 18 chr6 127281658 127281713 -55133529 - Tigger5 DNA MER2_type -2268 55 1 * 201 39 0 0 chr6 127282037 127282063 -55133179 + (TC)n Simple_repeat Simple_repeat 1 26 0 326 321 142 44 chr6 127283445 127283812 -55131430 + L1ME LINE L1 4655 5057 -1089 22 35 0 0 chr6 127283952 127283981 -55131261 + AT_rich Low_complexity Low_complexity 1 29 0 354 357 51 8 chr6 127284010 127284383 -55130859 + L1ME LINE L1 5383 5771 -350 4133 187 15 11 chr6 127284393 127285272 -55129970 + L1MB7 LINE L1 5294 6175 -9 21 0 0 0 chr6 127285319 127285340 -55129902 + AT_rich Low_complexity Low_complexity 1 21 0 251 283 133 17 chr6 127285359 127285479 -55129763 + L2 LINE L2 3139 3272 0 305 376 0 23 chr6 127285486 127285619 -55129623 + L2 LINE L2 3143 3272 0 246 314 25 2 chr6 127287447 127287579 -55127663 + MIR SINE MIR 29 185 -77 813 140 0 42 chr6 127287678 127287821 -55127421 + FLAM_C SINE Alu 1 137 -6 2145 111 4 0 chr6 127287915 127288229 -55127013 - AluSx SINE Alu 0 315 1 207 0 0 0 chr6 127288550 127288573 -55126669 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 329 289 52 0 chr6 127288888 127288985 -55126257 + MIR3 SINE MIR 68 169 -39 180 339 0 0 chr6 127289184 127289240 -55126002 - L2 LINE L2 0 3272 3217 243 257 50 71 chr6 127289916 127290056 -55125186 - MIR SINE MIR -70 192 56 247 338 88 25 chr6 127290329 127290673 -55124569 - L2 LINE L2 -199 3073 2412 1242 180 37 37 chr6 127291172 127291466 -55123776 - MER66B LTR ERV1 0 486 193 196 252 87 10 chr6 127291595 127291698 -55123544 + L2 LINE L2 3112 3222 -91 196 227 23 0 chr6 127293627 127293671 -55121571 + MIR SINE MIR 109 153 -109 207 146 49 49 chr6 127293938 127293979 -55121263 + MIR SINE MIR 210 250 -12 191 325 65 39 chr6 127294173 127294250 -55120992 + MIR SINE MIR 22 100 -108 30 59 0 0 chr6 127294450 127294501 -55120741 + AT_rich Low_complexity Low_complexity 1 51 0 391 291 140 9 chr6 127294722 127295098 -55120144 + MARNA DNA Mariner 75 529 -57 2370 163 56 48 chr6 127295230 127295727 -55119515 + MLT1D LTR MaLR 5 505 0 1988 155 14 22 chr6 127295757 127296125 -55119117 + MLT1A1 LTR MaLR 1 365 0 766 227 123 36 chr6 127297059 127297336 -55117906 + L2 LINE L2 3009 3309 -4 419 325 170 24 chr6 127297334 127297623 -55117619 - L2 LINE L2 -8 3264 2934 * 2086 116 33 3 chr6 127297637 127297939 -55117303 + AluSx SINE Alu 1 311 -1 1378 145 5 5 chr6 127297951 127298158 -55117084 + AluJb SINE Alu 1 207 -105 652 163 30 0 chr6 127298272 127298407 -55116835 - L1MB1 LINE L1 -17 6172 6034 253 252 113 52 chr6 127298720 127298835 -55116407 - L2 LINE L2 0 3313 3192 1901 302 127 19 chr6 127298903 127299795 -55115447 - L2 LINE L2 -338 2976 1989 651 316 127 40 chr6 127299813 127300484 -55114758 - L2 LINE L2 -855 2459 1731 450 296 194 20 chr6 127300491 127301031 -55114211 - L2 LINE L2 -1145 2169 1536 347 244 12 12 chr6 127301129 127301211 -55114031 + L2 LINE L2 3232 3313 0 1691 178 11 0 chr6 127301254 127301523 -55113719 - AluJo SINE Alu -39 273 2 418 284 46 1 chr6 127302123 127302247 -55112995 + MIR SINE MIR 35 163 -63 252 94 0 0 chr6 127302252 127302284 -55112958 + L2 LINE L2 3225 3256 -16 180 111 0 0 chr6 127302532 127302559 -55112683 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 441 0 0 0 chr6 127303151 127303200 -55112042 + (TG)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr6 127303538 127303567 -55111675 + AT_rich Low_complexity Low_complexity 1 29 0 489 123 0 0 chr6 127303685 127303758 -55111484 - Tigger5 DNA MER2_type 0 2323 2251 285 164 18 18 chr6 127303727 127303782 -55111460 - Tigger5 DNA MER2_type -2268 55 1 * 237 33 0 0 chr6 127304106 127304136 -55111106 + (TC)n Simple_repeat Simple_repeat 1 30 0 326 321 142 44 chr6 127305518 127305885 -55109357 + L1ME LINE L1 4655 5057 -1089 22 35 0 0 chr6 127306025 127306054 -55109188 + AT_rich Low_complexity Low_complexity 1 29 0 354 357 51 8 chr6 127306083 127306456 -55108786 + L1ME LINE L1 5383 5771 -350 4139 187 15 10 chr6 127306466 127307344 -55107898 + L1MB7 LINE L1 5294 6175 -9 21 0 0 0 chr6 127307391 127307412 -55107830 + AT_rich Low_complexity Low_complexity 1 21 0 251 283 133 17 chr6 127307431 127307551 -55107691 + L2 LINE L2 3139 3272 0 305 376 0 23 chr6 127307558 127307691 -55107551 + L2 LINE L2 3143 3272 0 246 314 25 2 chr6 127309519 127309651 -55105591 + MIR SINE MIR 29 185 -77 826 133 0 42 chr6 127309750 127309893 -55105349 + FLAM_C SINE Alu 1 137 -6 2145 111 4 0 chr6 127309987 127310301 -55104941 - AluSx SINE Alu 0 315 1 207 0 0 0 chr6 127310622 127310645 -55104597 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 329 289 52 0 chr6 127310960 127311057 -55104185 + MIR3 SINE MIR 68 169 -39 180 339 0 0 chr6 127311256 127311312 -55103930 - L2 LINE L2 0 3272 3217 243 257 50 71 chr6 127311988 127312128 -55103114 - MIR SINE MIR -70 192 56 247 338 88 25 chr6 127312401 127312745 -55102497 - L2 LINE L2 -199 3073 2412 403 252 63 0 chr6 127313035 127313146 -55102096 - MIR SINE MIR -110 152 35 305 250 80 0 chr6 127314211 127314299 -55100943 + L2 LINE L2 3178 3272 0 427 305 116 18 chr6 127315052 127315216 -55100026 - MIR3 SINE MIR -10 198 19 201 313 60 0 chr6 127315210 127315277 -55099965 - L2 LINE L2 -31 3241 3171 * 213 39 0 0 chr6 127315521 127315547 -55099695 + (TA)n Simple_repeat Simple_repeat 2 27 0 2388 110 0 0 chr6 127315547 127315855 -55099387 - AluSx SINE Alu -4 308 1 1551 173 31 0 chr6 127316725 127316980 -55098262 + AluJo SINE Alu 27 289 -23 418 297 131 11 chr6 127318068 127318243 -55096999 - MIR SINE MIR -14 248 53 415 259 27 9 chr6 127318339 127318451 -55096791 + MER81 DNA DNA 1 114 0 574 272 156 0 chr6 127318787 127318967 -55096275 - MIR SINE MIR -6 256 49 369 109 0 0 chr6 127319668 127319723 -55095519 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 57 0 0 chr6 127319901 127319936 -55095306 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr6 127320000 127320024 -55095218 + AT_rich Low_complexity Low_complexity 1 24 0 1981 121 7 3 chr6 127321338 127321643 -55093599 - AluSq SINE Alu 0 306 1 850 103 0 8 chr6 127321971 127322088 -55093154 + AluSq SINE Alu 133 248 -65 721 247 21 11 chr6 127323877 127324063 -55091179 + MER5A DNA MER1_type 2 189 0 1392 85 14 22 chr6 127326029 127326252 -55088990 + L1MA4 LINE L1 6075 6295 -5 294 262 14 103 chr6 127327474 127327541 -55087701 - MIR3 SINE MIR 0 208 137 2037 122 28 0 chr6 127327541 127327828 -55087414 + AluSx SINE Alu 1 295 -17 294 262 14 103 chr6 127327828 127327916 -55087326 - MIR3 SINE MIR -71 137 61 270 0 0 0 chr6 127328076 127328121 -55087121 + (TC)n Simple_repeat Simple_repeat 1 75 0 270 0 0 0 chr6 127328121 127328151 -55087091 + (TC)n Simple_repeat Simple_repeat 2 31 0 187 205 0 26 chr6 127328289 127328328 -55086914 + MIR SINE MIR 82 119 -89 782 249 163 23 chr6 127328336 127328778 -55086464 + LTR33A LTR ERVL 1 504 -19 320 276 173 8 chr6 127328778 127328905 -55086337 + MIR SINE MIR 109 256 -6 1202 336 103 23 chr6 127329489 127330415 -55084827 + L2 LINE L2 2257 3272 0 376 255 117 0 chr6 127332899 127333044 -55082198 - MER117 DNA MER1_type -34 163 2 1560 121 62 33 chr6 127333567 127333721 -55081521 - L1MA9 LINE L1 -4 6308 6160 363 23 0 0 chr6 127333721 127333765 -55081477 + (TG)n Simple_repeat Simple_repeat 1 44 0 1560 121 62 33 chr6 127333765 127333917 -55081325 - L1MA9 LINE L1 -152 6160 5993 424 271 28 14 chr6 127334476 127334620 -55080622 + MER5A DNA MER1_type 44 189 0 3055 153 41 51 chr6 127335085 127335165 -55080077 - L1MD1 LINE L1 0 6242 6163 4234 111 3 7 chr6 127335165 127335777 -55079465 - MER4B LTR ERV1 0 610 1 3055 153 41 51 chr6 127335777 127336381 -55078861 - L1MD1 LINE L1 -79 6163 5565 24 0 0 0 chr6 127336514 127336538 -55078704 + AT_rich Low_complexity Low_complexity 1 24 0 391 196 121 110 chr6 127336636 127336809 -55078433 - MER5B DNA MER1_type -2 176 2 612 215 139 0 chr6 127336877 127337035 -55078207 - MER20 DNA MER1_type 0 219 40 25 51 0 0 chr6 127337482 127337521 -55077721 + AT_rich Low_complexity Low_complexity 1 39 0 2258 112 0 0 chr6 127337744 127338038 -55077204 - AluSg SINE Alu -16 294 1 387 0 0 0 chr6 127338188 127338231 -55077011 + (CA)n Simple_repeat Simple_repeat 2 44 0 807 168 24 9 chr6 127338295 127338523 -55076719 - L1MD1 LINE L1 -805 5341 5129 2172 104 0 0 chr6 127338781 127339095 -55076147 + AluSx SINE Alu 1 314 0 343 211 202 0 chr6 127339096 127339200 -55076042 - MER5B DNA MER1_type -53 125 1 * 371 269 131 6 chr6 127339200 127339359 -55075883 + L3 LINE CR1 1285 1463 -114 256 223 54 62 chr6 127340067 127340102 -55075140 + MER94 DNA DNA 19 53 -81 2300 169 122 4 chr6 127340102 127340553 -55074689 - MLT1D LTR MaLR -1 504 1 256 223 54 62 chr6 127340553 127340629 -55074613 + MER94 DNA DNA 53 129 -5 244 261 78 78 chr6 127340839 127340954 -55074288 + MIR SINE MIR 8 122 -140 29 28 0 0 chr6 127342164 127342200 -55073042 + AT_rich Low_complexity Low_complexity 1 36 0 190 260 20 0 chr6 127342214 127342264 -55072978 - L2 LINE L2 -11 3302 3252 833 201 162 42 chr6 127342972 127343033 -55072209 - MLT1J2 LTR MaLR -132 318 266 893 211 86 14 chr6 127343033 127343242 -55072000 + MER58A DNA MER1_type 1 224 0 833 201 162 42 chr6 127343242 127343464 -55071778 - MLT1J2 LTR MaLR -184 266 1 332 270 90 18 chr6 127344089 127344311 -55070931 - HAL1b LINE L1 -514 834 597 334 174 48 0 chr6 127344568 127344735 -55070507 + (TA)n Simple_repeat Simple_repeat 2 176 0 2636 143 24 5 chr6 127344760 127345178 -55070064 + MSTB LTR MaLR 1 426 0 1736 173 3 19 chr6 127345839 127346146 -55069096 + AluJb SINE Alu 2 303 -9 463 306 59 64 chr6 127346293 127346332 -55068910 + MIR SINE MIR 43 81 -181 1666 207 85 17 chr6 127346332 127346805 -55068437 - Charlie4a DNA MER1_type -3 505 1 463 306 59 64 chr6 127346805 127346984 -55068258 + MIR SINE MIR 81 260 -2 1666 159 49 55 chr6 127347005 127347350 -55067892 - MER2 DNA MER2_type 0 344 2 28 29 0 0 chr6 127347738 127347773 -55067469 + AT_rich Low_complexity Low_complexity 1 35 0 312 296 17 61 chr6 127348031 127348146 -55067096 + L2 LINE L2 3199 3308 -5 24 67 0 0 chr6 127348495 127348540 -55066702 + AT_rich Low_complexity Low_complexity 1 45 0 675 165 318 0 chr6 127348636 127348806 -55066436 - MER58A DNA MER1_type 0 224 1 792 168 68 6 chr6 127350724 127350885 -55064357 - MLT1B LTR MaLR -219 171 1 603 209 22 7 chr6 127350885 127351023 -55064219 - MLT1D LTR MaLR -365 140 1 890 178 20 0 chr6 127351193 127351339 -55063903 + FAM SINE Alu 1 48 -1 727 316 33 4 chr6 127351606 127351850 -55063392 - MIR SINE MIR 0 262 12 1754 151 68 37 chr6 127351971 127351994 -55063248 - MLT2D LTR ERVL -19 395 374 405 0 0 0 chr6 127351994 127352039 -55063203 + (TG)n Simple_repeat Simple_repeat 2 46 0 1754 151 68 37 chr6 127352039 127352398 -55062844 - MLT2D LTR ERVL -40 374 1 3827 191 82 15 chr6 127352398 127353309 -55061933 - ERVL-D LTR ERVL -7 5757 4786 366 23 0 0 chr6 127356115 127356158 -55059084 + (TG)n Simple_repeat Simple_repeat 2 44 0 617 133 242 16 chr6 127356159 127356287 -55058955 - FRAM SINE Alu -21 155 1 27 49 0 0 chr6 127357440 127357481 -55057761 + AT_rich Low_complexity Low_complexity 1 41 0 192 274 0 16 chr6 127358072 127358134 -55057108 + L2 LINE L2 476 536 -2778 1918 162 3 10 chr6 127358453 127358761 -55056481 + AluJb SINE Alu 1 306 -6 469 316 119 0 chr6 127358868 127359045 -55056197 - MIR SINE MIR -17 245 48 248 376 38 13 chr6 127359955 127360112 -55055130 + L2 LINE L2 3112 3272 0 225 180 0 0 chr6 127361474 127361524 -55053718 + (TTA)n Simple_repeat Simple_repeat 1 50 0 2591 58 0 0 chr6 127362376 127362684 -55052558 - AluY SINE Alu -3 308 1 232 296 14 14 chr6 127365831 127365902 -55049340 + L2 LINE L2 3201 3271 -1 256 188 12 12 chr6 127366201 127366281 -55048961 + CT-rich Low_complexity Low_complexity 3 82 0 21 82 0 0 chr6 127366346 127366395 -55048847 + AT_rich Low_complexity Low_complexity 1 49 0 333 307 18 0 chr6 127366849 127366963 -55048279 + MER94 DNA DNA 15 130 -4 327 25 0 0 chr6 127369126 127369166 -55046076 + (TG)n Simple_repeat Simple_repeat 2 41 0 2403 70 3 10 chr6 127369728 127370027 -55045215 + AluSg SINE Alu 1 297 -13 596 235 77 45 chr6 127371633 127371854 -55043388 - MIR SINE MIR -4 258 31 1747 295 116 6 chr6 127372317 127373161 -55042081 + L2 LINE L2 1932 2868 -446 1425 109 64 0 chr6 127373204 127373406 -55041836 - AluSx SINE Alu -97 215 1 21 57 0 0 chr6 127374010 127374045 -55041197 + AT_rich Low_complexity Low_complexity 1 35 0 188 310 193 14 chr6 127374158 127374303 -55040939 + L2 LINE L2 2521 2691 -623 602 274 94 5 chr6 127374421 127374633 -55040609 + L2 LINE L2 3083 3313 0 537 324 29 67 chr6 127374665 127375038 -55040204 + L2 LINE L2 2778 3126 -146 2167 103 0 0 chr6 127375038 127375319 -55039923 + AluSg SINE Alu 11 291 -19 537 324 29 67 chr6 127375319 127375456 -55039786 + L2 LINE L2 3126 3267 -5 553 271 33 7 chr6 127375459 127375610 -55039632 + L3 LINE CR1 1277 1431 -146 207 311 0 56 chr6 127375805 127375895 -55039347 + L2 LINE L2 3136 3220 -93 24 67 0 0 chr6 127376068 127376113 -55039129 + AT_rich Low_complexity Low_complexity 1 45 0 218 119 0 24 chr6 127376672 127376714 -55038528 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 384 113 0 0 chr6 127376910 127376972 -55038270 - MLT2A2 LTR ERVL 0 453 392 291 114 0 43 chr6 127376976 127377046 -55038196 + (TA)n Simple_repeat Simple_repeat 2 68 0 2926 86 25 0 chr6 127377046 127377454 -55037788 - MLT2A2 LTR ERVL -35 418 1 1261 156 34 10 chr6 127377516 127377721 -55037521 + AluJb SINE Alu 1 210 -102 971 177 0 6 chr6 127377735 127377893 -55037349 + AluJb SINE Alu 156 312 0 289 242 179 66 chr6 127379035 127379254 -55035988 + MLT1C LTR MaLR 18 260 -207 245 252 171 27 chr6 127379823 127379934 -55035308 - LTR67 LTR ERVL 0 557 431 231 269 0 15 chr6 127381144 127381211 -55034031 + GA-rich Low_complexity Low_complexity 4 69 0 501 124 0 11 chr6 127381368 127381457 -55033785 + L1MB4 LINE L1 6093 6180 0 229 296 59 72 chr6 127382184 127382336 -55032906 - MIR3 SINE MIR -21 187 38 29654 107 12 59 chr6 127383196 127384697 -55030545 - L1PA7 LINE L1 -4 6150 4580 2065 125 3 0 chr6 127384697 127384992 -55030250 - AluSq SINE Alu -17 296 1 29654 107 12 59 chr6 127384992 127389943 -55025299 - L1PA7 LINE L1 -1574 4580 12 2484 87 8 75 chr6 127390005 127390407 -55024835 - THE1C LTR MaLR 0 375 1 394 228 59 0 chr6 127390792 127390893 -55024349 - MIR SINE MIR 0 262 156 1141 226 53 20 chr6 127390897 127391198 -55024044 + LTR40a LTR ERVL 1 311 -208 223 361 56 19 chr6 127391257 127391365 -55023877 - L2 LINE L2 -473 2841 2730 605 272 70 91 chr6 127391365 127391806 -55023436 - MLT1J2 LTR MaLR -18 432 1 1036 277 58 33 chr6 127392467 127392896 -55022346 - LTR16A LTR ERVL -3 447 8 203 204 19 0 chr6 127392940 127392994 -55022248 + (CA)n Simple_repeat Simple_repeat 1 55 0 631 286 57 0 chr6 127393224 127393416 -55021826 + MIR SINE MIR 48 250 -12 504 212 18 0 chr6 127393933 127394046 -55021196 + MLT1J2 LTR MaLR 48 162 -288 398 213 0 0 chr6 127394046 127394121 -55021121 + MER81 DNA DNA 2 76 -38 372 259 56 28 chr6 127394733 127394876 -55020366 + MIR3 SINE MIR 1 147 -61 214 292 69 14 chr6 127394892 127394964 -55020278 - L2 LINE L2 -23 3290 3215 1529 152 37 57 chr6 127395070 127395367 -55019875 - AluJb SINE Alu -21 291 1 441 330 128 19 chr6 127395518 127395885 -55019357 - L2 LINE L2 -14 3258 2852 351 221 0 0 chr6 127395890 127395976 -55019266 + CT-rich Low_complexity Low_complexity 4 89 0 186 278 51 97 chr6 127396077 127396293 -55018949 - L2 LINE L2 -646 2668 2463 393 272 7 68 chr6 127397260 127397407 -55017835 + MIR SINE MIR 13 150 -112 2244 107 0 35 chr6 127397552 127397862 -55017380 + AluSx SINE Alu 2 300 -12 306 299 36 42 chr6 127398604 127398771 -55016471 - LTR67 LTR ERVL -40 517 352 405 263 59 20 chr6 127398861 127399013 -55016229 - LTR67 LTR ERVL -389 168 11 826 176 7 0 chr6 127400333 127400475 -55014767 - LTR18A LTR ERVL 0 357 215 1679 140 16 0 chr6 127400546 127400796 -55014446 - LTR18A LTR ERVL -103 254 1 400 330 161 35 chr6 127401759 127401980 -55013262 + L2 LINE L2 2846 3038 -275 811 209 17 0 chr6 127401980 127402152 -55013090 - MER5B DNA MER1_type -3 175 1 400 330 161 35 chr6 127402152 127402278 -55012964 + L2 LINE L2 3038 3237 -76 224 245 19 19 chr6 127402432 127402485 -55012757 - MER5A DNA MER1_type -88 101 49 253 381 0 24 chr6 127402536 127402662 -55012580 + MER5A DNA MER1_type 37 159 -30 4718 188 98 37 chr6 127402774 127403334 -55011908 + L1ME LINE L1 48 573 -5507 1262 173 43 30 chr6 127403334 127403634 -55011608 + L1MB4 LINE L1 5877 6180 0 4718 188 98 37 chr6 127403634 127406018 -55009224 + L1ME LINE L1 573 3232 -2848 2020 169 13 69 chr6 127406055 127406504 -55008738 - MLT2B3 LTR ERVL -130 424 1 5904 211 62 12 chr6 127406543 127408157 -55007085 + L1ME LINE L1 3334 5097 -1181 2417 28 41 0 chr6 127408157 127408447 -55006795 + AluY SINE Alu 1 302 -9 5904 211 62 12 chr6 127408447 127409107 -55006135 + L1ME LINE L1 5097 5723 -555 35 24 0 0 chr6 127409135 127409177 -55006065 + AT_rich Low_complexity Low_complexity 1 42 0 4574 250 52 21 chr6 127409177 127410437 -55004805 + L1ME LINE L1 3369 4697 -1449 885 203 14 28 chr6 127410437 127410649 -55004593 - MER3 DNA MER1_type 0 209 1 4574 250 52 21 chr6 127410649 127411092 -55004150 + L1ME LINE L1 4697 5125 -1021 961 182 28 0 chr6 127411092 127411268 -55003974 + AluJb SINE Alu 121 301 -11 593 224 66 15 chr6 127411268 127411407 -55003835 + L1ME LINE L1 5206 5365 -797 351 0 0 0 chr6 127411407 127411446 -55003796 + (CA)n Simple_repeat Simple_repeat 2 40 0 593 224 66 15 chr6 127411446 127411548 -55003694 + L1ME LINE L1 5365 5460 -702 272 333 54 0 chr6 127411582 127411675 -55003567 - MIR SINE MIR -63 145 48 220 194 0 42 chr6 127411759 127411831 -55003411 + GA-rich Low_complexity Low_complexity 1 69 0 1981 166 3 0 chr6 127412500 127412807 -55002435 - AluJb SINE Alu -3 309 2 201 39 0 0 chr6 127412807 127412833 -55002409 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1531 189 11 7 chr6 127412834 127413114 -55002128 - AluJo SINE Alu -31 281 1 375 355 43 22 chr6 127413935 127414166 -55001076 - MIR SINE MIR -7 255 20 200 234 0 0 chr6 127414454 127414501 -55000741 + L2 LINE L2 1185 1231 -2083 468 375 94 3 chr6 127414502 127414841 -55000401 + L2 LINE L2 1810 2179 -1135 1630 196 52 8 chr6 127414899 127415267 -54999975 + L1PA15 LINE L1 3724 4107 -2039 953 186 5 10 chr6 127415277 127415481 -54999761 + L1P LINE L1 4632 4834 -1312 6052 196 44 9 chr6 127415481 127417528 -54997714 + L1PA15 LINE L1 4098 6163 -2 1377 98 0 0 chr6 127418360 127418553 -54996689 + L1PB1 LINE L1 5959 6151 0 15471 58 3 3 chr6 127419167 127421213 -54994029 + L1P LINE L1 136 2180 -3966 463 306 149 9 chr6 127422146 127422368 -54992874 + L3 LINE CR1 1212 1464 -113 605 226 89 92 chr6 127422381 127422774 -54992468 - MLT1J1 LTR MaLR 0 450 58 268 200 31 31 chr6 127422774 127422839 -54992403 + MIR SINE MIR 85 149 -113 4220 158 45 15 chr6 127422840 127423811 -54991431 + L1MB7 LINE L1 5173 6173 -11 324 303 79 14 chr6 127423863 127424182 -54991060 + MLT1J1 LTR MaLR 41 433 -13 522 176 0 0 chr6 127424351 127424442 -54990800 - Tigger7 DNA MER2_type 0 2487 2397 1384 178 46 15 chr6 127424458 127424717 -54990525 - Tigger7 DNA MER2_type -466 267 1 183 80 0 0 chr6 127424918 127424943 -54990299 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1106 272 137 15 chr6 127424950 127425679 -54989563 - L2 LINE L2 -50 3263 2443 326 280 121 30 chr6 127426337 127426469 -54988773 + MIR SINE MIR 11 154 -108 2284 83 0 0 chr6 127427451 127427760 -54987482 + AluSc SINE Alu 1 309 0 363 321 107 0 chr6 127427815 127427946 -54987296 + MIR SINE MIR 118 262 0 249 316 58 53 chr6 127428951 127429141 -54986101 + MIR SINE MIR 21 211 -51 239 384 53 23 chr6 127429814 127430210 -54985032 - L2 LINE L2 -2365 949 542 201 383 0 82 chr6 127430282 127430465 -54984777 - L2 LINE L2 -2851 463 296 335 282 50 39 chr6 127431061 127431242 -54984000 + L1MC4a LINE L1 5701 5883 -1925 212 197 0 26 chr6 127431278 127431354 -54983888 + GA-rich Low_complexity Low_complexity 4 77 0 28 48 0 0 chr6 127432018 127432060 -54983182 + AT_rich Low_complexity Low_complexity 1 42 0 237 370 37 15 chr6 127432670 127432805 -54982437 - MIR3 SINE MIR -1 207 70 380 202 83 0 chr6 127433001 127433085 -54982157 - L2 LINE L2 0 3313 3223 * 1226 246 134 39 chr6 127433081 127433545 -54981697 - L2 LINE L2 -563 2751 2244 193 313 104 0 chr6 127433649 127433716 -54981526 - L2 LINE L2 -5 3308 3235 185 311 78 0 chr6 127434401 127434491 -54980751 - L2 LINE L2 -528 2786 2690 7267 75 2 0 chr6 127435380 127436851 -54978391 + L1PA7 LINE L1 4354 5827 -327 2479 60 40 0 chr6 127436951 127437298 -54977944 + L1PA6 LINE L1 5421 5781 -373 41868 40 2 1 chr6 127437310 127443446 -54971796 + L1PA3 LINE L1 12 6152 -3 2663 89 16 11 chr6 127443446 127443826 -54971416 + L1PA6 LINE L1 5770 6153 -1 * 14507 91 17 0 chr6 127443823 127446685 -54968557 + L1PA7 LINE L1 3252 6153 -1 335 269 0 0 chr6 127446968 127447046 -54968196 + MIR3 SINE MIR 119 196 -12 254 240 260 0 chr6 127447277 127447373 -54967869 - MER5A DNA MER1_type -6 183 63 1178 142 97 0 chr6 127447376 127447602 -54967640 - L1MA4 LINE L1 0 6300 6053 5297 176 21 9 chr6 127447602 127448714 -54966528 - L1 LINE L1 -1778 4550 3426 * 5743 105 14 22 chr6 127448713 127449673 -54965569 - L1MA2 LINE L1 -1 6303 5352 1582 188 0 58 chr6 127449711 127450040 -54965202 - AluJb SINE Alu -2 310 1 13968 173 28 12 chr6 127450040 127452973 -54962269 - L1 LINE L1 -749 6816 3803 2445 107 19 16 chr6 127452973 127453347 -54961895 - THE1C LTR MaLR 0 375 1 13968 173 28 12 chr6 127453347 127454322 -54960920 - L1 LINE L1 -3762 3803 2845 7495 153 67 12 chr6 127454321 127454621 -54960621 - L1 LINE L1 -5000 2565 2283 * 2242 122 16 0 chr6 127454621 127454924 -54960318 - AluSx SINE Alu -4 308 1 7495 153 67 12 chr6 127454924 127455958 -54959284 - L1 LINE L1 -5282 2283 1158 4110 171 64 18 chr6 127455960 127456051 -54959191 - L1 LINE L1 -4457 871 786 180 0 0 0 chr6 127456051 127456071 -54959171 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4110 171 64 18 chr6 127456071 127456810 -54958432 - L1 LINE L1 -4542 786 3 1810 152 12 0 chr6 127456810 127457132 -54958110 - L1MA4 LINE L1 -234 7485 7160 273 54 0 0 chr6 127457149 127457186 -54958056 + L1M2 LINE L1 5708 5744 -556 201 296 19 0 chr6 127457186 127457240 -54958002 - MER5A DNA MER1_type -131 58 4 523 248 22 22 chr6 127457512 127457649 -54957593 - L2 LINE L2 -1 3312 3176 1774 168 46 7 chr6 127457696 127457981 -54957261 - AluSx SINE Alu -16 296 1 1978 129 20 39 chr6 127458278 127458634 -54956608 - THE1B LTR MaLR -15 349 1 1509 199 3 30 chr6 127458732 127459034 -54956208 + AluJo SINE Alu 1 294 -18 1587 187 34 39 chr6 127459076 127459483 -54955759 + LTR37A LTR ERV1 19 423 -3 1435 188 47 0 chr6 127459958 127460392 -54954850 + L1MC/D LINE L1 5132 5588 -743 295 248 86 20 chr6 127460578 127460776 -54954466 + L1ME LINE L1 784 994 -5076 1679 167 148 16 chr6 127460840 127461218 -54954024 + MSTA LTR MaLR 1 428 0 200 303 11 22 chr6 127461225 127461314 -54953928 + A-rich Low_complexity Low_complexity 2 89 0 809 106 0 0 chr6 127461315 127461428 -54953814 + AluSg/x SINE Alu 191 303 -6 285 233 19 19 chr6 127461428 127461531 -54953711 + L1ME LINE L1 1167 1269 -4992 25 65 0 0 chr6 127461549 127461595 -54953647 + AT_rich Low_complexity Low_complexity 1 46 0 814 197 36 14 chr6 127461606 127461829 -54953413 + L1M4 LINE L1 3735 3962 -2184 250 283 75 0 chr6 127462078 127462184 -54953058 - HAL1 LINE L1 -920 1587 1474 311 228 126 89 chr6 127462282 127462607 -54952635 - L1MEd LINE L1 -4864 1255 919 223 240 0 20 chr6 127462981 127463031 -54952211 + CT-rich Low_complexity Low_complexity 6 54 0 1999 154 0 3 chr6 127465644 127465936 -54949306 + AluSx SINE Alu 1 291 -21 614 197 36 0 chr6 127465941 127466078 -54949164 - L1ME3A LINE L1 -28 6142 6001 729 299 181 15 chr6 127466141 127466616 -54948626 - L1MEd LINE L1 -5298 821 268 503 269 41 0 chr6 127466645 127466816 -54948426 + L1MC4 LINE L1 7357 7534 -508 1789 176 78 51 chr6 127466926 127467416 -54947826 + MLT1D LTR MaLR 1 503 -2 492 217 103 103 chr6 127467605 127467808 -54947434 + MIR SINE MIR 58 260 -2 710 187 0 52 chr6 127468103 127468237 -54947005 - FLAM_A SINE Alu -6 127 1 1155 126 6 11 chr6 127468245 127468420 -54946822 - AluSg/x SINE Alu -3 309 136 2109 112 3 3 chr6 127468434 127468729 -54946513 - AluSx SINE Alu -17 295 1 191 203 0 87 chr6 127469125 127469194 -54946048 - L2 LINE L2 -87 3226 3164 619 233 38 0 chr6 127469479 127469638 -54945604 - L1ME3A LINE L1 -404 5760 5596 21 71 0 0 chr6 127469755 127469797 -54945445 + AT_rich Low_complexity Low_complexity 1 42 0 2436 91 0 0 chr6 127470365 127470673 -54944569 + AluSg SINE Alu 1 308 -2 23 0 0 0 chr6 127473742 127473765 -54941477 + AT_rich Low_complexity Low_complexity 1 23 0 1710 161 51 20 chr6 127474130 127474259 -54940983 - L1MB7 LINE L1 -71 6113 5989 1285 129 123 101 chr6 127474259 127474453 -54940789 - MLT1A1 LTR MaLR 0 365 158 2303 128 0 0 chr6 127474453 127474765 -54940477 + AluSx SINE Alu 1 312 0 1285 129 123 101 chr6 127474765 127474927 -54940315 - MLT1A1 LTR MaLR -207 158 1 1710 161 51 20 chr6 127474927 127475151 -54940091 - L1MB7 LINE L1 -195 5989 5749 438 308 0 23 chr6 127475159 127475292 -54939950 - MIR SINE MIR -120 142 13 298 334 31 18 chr6 127475362 127475751 -54939491 - L1ME3A LINE L1 -814 5332 4939 575 290 80 18 chr6 127475768 127476008 -54939234 + L1ME3A LINE L1 5343 5567 -603 1988 172 17 6 chr6 127476008 127476369 -54938873 - MLT1A1 LTR MaLR 0 365 1 575 290 80 18 chr6 127476369 127476662 -54938580 + L1ME3A LINE L1 5567 5937 -233 1841 188 0 7 chr6 127476894 127477187 -54938055 - AluJo SINE Alu -21 291 1 950 218 52 109 chr6 127477648 127478015 -54937227 + MLT1B LTR MaLR 1 346 -44 645 197 13 46 chr6 127478476 127478628 -54936614 + L2 LINE L2 3167 3313 0 1194 191 71 31 chr6 127481138 127481488 -54933754 - MER63B DNA MER1_type -65 371 8 295 245 83 108 chr6 127481582 127481823 -54933419 + MLT1K LTR MaLR 15 249 -339 286 183 0 17 chr6 127481964 127482024 -54933218 + MLT1K LTR MaLR 468 526 -62 222 257 0 95 chr6 127482326 127482400 -54932842 + L2 LINE L2 3196 3262 -10 22 0 0 0 chr6 127484124 127484146 -54931096 + AT_rich Low_complexity Low_complexity 1 22 0 2708 257 55 15 chr6 127484521 127485327 -54929915 - ERVL-F LTR ERVL -1750 4014 3177 5156 281 69 29 chr6 127485374 127487571 -54927671 - ERVL-F LTR ERVL -2901 2863 508 371 252 84 7 chr6 127487849 127487992 -54927250 - ERVL-F LTR ERVL -5588 176 23 747 273 115 75 chr6 127488017 127488512 -54926730 - MLT2F LTR ERVL -1 662 148 5434 168 20 22 chr6 127488528 127490017 -54925225 + L1PA12 LINE L1 5 2006 -5575 3823 244 223 2 chr6 127490018 127491184 -54924058 + L1PA13 LINE L1 347 1770 -5017 * 12695 158 19 89 chr6 127491178 127491234 -54924008 + L1PA13 LINE L1 2454 2512 -4285 2325 103 3 0 chr6 127491234 127491535 -54923707 + AluSp SINE Alu 1 302 -11 12695 158 19 89 chr6 127491535 127494350 -54920892 + L1PA13 LINE L1 2512 5090 -1707 2386 91 3 0 chr6 127494350 127494646 -54920596 + AluSp SINE Alu 1 297 -16 12695 158 19 89 chr6 127494646 127494903 -54920339 + L1PA13 LINE L1 5090 5363 -1434 1584 121 4 50 chr6 127494904 127495144 -54920098 + AluSq SINE Alu 1 229 -84 21 0 0 0 chr6 127495163 127495184 -54920058 + AT_rich Low_complexity Low_complexity 1 21 0 6476 72 14 2 chr6 127495187 127496623 -54918619 + L1PA13 LINE L1 5349 6798 -16 1596 162 64 0 chr6 127496630 127496958 -54918284 + L1MA7 LINE L1 5939 6287 -4 353 273 31 8 chr6 127496975 127497103 -54918139 - MLT2F LTR ERVL -513 150 20 29 94 0 0 chr6 127497282 127497367 -54917875 + AT_rich Low_complexity Low_complexity 1 85 0 2350 108 0 10 chr6 127499391 127499705 -54915537 + AluSx SINE Alu 2 312 0 189 0 0 0 chr6 127499726 127499747 -54915495 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 297 127 55 18 chr6 127500452 127500507 -54914735 + L2 LINE L2 3230 3286 -27 227 128 154 0 chr6 127500959 127500998 -54914244 + L2 LINE L2 3266 3310 -3 261 271 0 0 chr6 127501388 127501447 -54913795 + L2 LINE L2 2993 3051 -221 1214 107 5 0 chr6 127502488 127502694 -54912548 + L1P LINE L1 3061 3267 -2879 33885 102 11 11 chr6 127502701 127508842 -54906400 + L1PA7 LINE L1 11 6153 -1 189 0 0 0 chr6 127508931 127508952 -54906290 + (CA)n Simple_repeat Simple_repeat 1 21 0 32 26 0 0 chr6 127509414 127509453 -54905789 + AT_rich Low_complexity Low_complexity 1 39 0 1093 199 9 18 chr6 127509841 127510067 -54905175 - MER58A DNA MER1_type 0 224 1 1375 163 152 4 chr6 127510243 127510513 -54904729 - AluSx SINE Alu -2 310 1 301 292 90 7 chr6 127510699 127510843 -54904399 + MIR3 SINE MIR 40 195 -13 2263 96 0 0 chr6 127512580 127512905 -54902337 + AluSx SINE Alu 1 325 0 626 100 0 0 chr6 127564804 127564894 -54850348 - AluSg/x SINE Alu -9 301 212 986 263 148 0 chr6 127565344 127565641 -54849601 - L2 LINE L2 -564 2750 2410 2906 248 109 57 chr6 127565814 127566863 -54848379 + L1M4b LINE L1 3 1105 -5754 1069 187 60 46 chr6 127566854 127567109 -54848133 + L1MB8 LINE L1 5888 6149 -29 * 2457 69 3 3 chr6 127567109 127567413 -54847829 - AluY SINE Alu -5 306 3 1069 187 60 46 chr6 127567413 127567440 -54847802 + L1MB8 LINE L1 6149 6174 -4 248 349 46 9 chr6 127567688 127567797 -54847445 - MER5A DNA MER1_type -35 154 42 22 0 0 0 chr6 127569607 127569629 -54845613 + AT_rich Low_complexity Low_complexity 1 22 0 611 255 224 50 chr6 127571082 127571439 -54843803 + L2 LINE L2 2833 3251 -62 25 0 0 0 chr6 127571765 127571790 -54843452 + AT_rich Low_complexity Low_complexity 1 25 0 273 26 0 0 chr6 127572767 127572806 -54842436 - L1PA14 LINE L1 0 6161 6123 1208 202 0 8 chr6 127573188 127573426 -54841816 + MER46A DNA MER2_type 1 236 0 30 59 0 0 chr6 127573449 127573500 -54841742 + AT_rich Low_complexity Low_complexity 1 51 0 26 50 0 0 chr6 127573948 127573988 -54841254 + AT_rich Low_complexity Low_complexity 1 40 0 2527 155 26 9 chr6 127573993 127574452 -54840790 - L1MB2 LINE L1 -38 6133 5667 730 249 14 41 chr6 127574660 127574881 -54840361 + MER20 DNA MER1_type 5 219 0 1860 248 91 40 chr6 127575763 127575790 -54839452 + HsTC2c DNA Tc2 1 25 -1873 2072 122 0 29 chr6 127575790 127576101 -54839141 + AluSx SINE Alu 2 303 -9 1860 248 91 40 chr6 127576101 127576767 -54838475 + HsTC2c DNA Tc2 25 729 0 301 307 181 0 chr6 127577372 127577499 -54837743 - MIR3 SINE MIR -44 164 15 3803 246 79 56 chr6 127579135 127580747 -54834495 + L1M3d LINE L1 1 1255 -4636 2201 112 3 13 chr6 127580747 127581051 -54834191 + AluSq SINE Alu 1 301 -12 3803 246 79 56 chr6 127581051 127581175 -54834067 + L1M3d LINE L1 1255 1375 -4516 444 210 0 12 chr6 127581195 127581276 -54833966 + MER8 DNA MER2_type 1 80 -159 3505 141 68 99 chr6 127581277 127582117 -54833125 + L1MB1 LINE L1 5355 6168 0 1544 202 121 16 chr6 127582221 127582651 -54832591 + L1ME2 LINE L1 5499 5973 -191 1688 144 23 39 chr6 127582652 127582958 -54832284 - L1P5 LINE L1 -359 5792 5492 387 0 0 0 chr6 127582958 127583001 -54832241 + (CA)n Simple_repeat Simple_repeat 2 44 0 403 325 112 29 chr6 127583735 127583941 -54831301 + MIR SINE MIR 40 262 0 380 285 52 42 chr6 127584040 127584233 -54831009 + L2 LINE L2 3119 3313 0 354 238 60 12 chr6 127584430 127584514 -54830728 - L2 LINE L2 -1 3312 3225 5008 181 36 78 chr6 127585664 127586911 -54828331 + L1MC4a LINE L1 6 1200 -5226 855 120 14 7 chr6 127586911 127587053 -54828189 + THE1C-int LTR MaLR 1438 1580 0 2475 119 22 8 chr6 127587053 127587423 -54827819 + THE1C LTR MaLR 1 375 0 11548 102 7 17 chr6 127587423 127588101 -54827141 + Charlie3 DNA MER1_type 1060 1743 -963 449 17 17 0 chr6 127588101 127588159 -54827083 + (TTTTA)n Simple_repeat Simple_repeat 5 63 0 2033 79 4 0 chr6 127588160 127588414 -54826828 - AluSg SINE Alu -55 255 1 11548 102 7 17 chr6 127588414 127589396 -54825846 + Charlie3 DNA MER1_type 1742 2706 0 2384 152 78 42 chr6 127589396 127589974 -54825268 + L1MC4a LINE L1 1717 2315 -4111 842 125 0 8 chr6 127589985 127590105 -54825137 + FLAM_C SINE Alu 13 131 -12 393 217 0 0 chr6 127590164 127590247 -54824995 + L1MC4a LINE L1 2749 2831 -3595 621 152 0 0 chr6 127590269 127590374 -54824868 + FLAM_C SINE Alu 31 135 -8 253 179 0 30 chr6 127590375 127590442 -54824800 + GA-rich Low_complexity Low_complexity 4 68 0 1708 229 39 30 chr6 127590470 127591012 -54824230 + L1MC4a LINE L1 2856 3402 -3024 1462 216 20 53 chr6 127591018 127591145 -54824097 + L1MC4a LINE L1 4108 4238 -2188 2303 107 0 0 chr6 127591145 127591455 -54823787 + AluSg SINE Alu 1 310 0 1462 216 20 53 chr6 127591455 127591776 -54823466 + L1MC4a LINE L1 4238 4541 -1885 1372 143 34 59 chr6 127591780 127592018 -54823224 + AluJo SINE Alu 1 232 -80 2194 177 9 47 chr6 127592019 127592466 -54822776 + LTR3 LTR ERVK 1 430 -2 352 191 0 0 chr6 127592526 127592589 -54822653 + AluJo SINE Alu 231 293 -9 302 257 90 104 chr6 127592982 127593204 -54822038 + L1M2 LINE L1 1172 1390 -5459 207 0 0 0 chr6 127593571 127593594 -54821648 + (GA)n Simple_repeat Simple_repeat 1 23 0 3480 218 33 18 chr6 127594820 127595801 -54819441 + L1MC4a LINE L1 4532 5526 -900 2108 133 0 3 chr6 127595853 127596155 -54819087 + AluSx SINE Alu 1 301 -11 2404 203 69 37 chr6 127596155 127596723 -54818519 + MER21B LTR ERV1 277 862 -1 452 125 0 0 chr6 127596731 127596795 -54818447 + L1MC1 LINE L1 5700 5763 -570 587 193 0 9 chr6 127596795 127596894 -54818348 + L1MC1 LINE L1 6219 6326 -7 1945 100 0 4 chr6 127596921 127597171 -54818071 + AluSg SINE Alu 1 249 -61 261 0 0 0 chr6 127597171 127597200 -54818042 + (A)n Simple_repeat Simple_repeat 1 29 0 2798 178 18 25 chr6 127597269 127597824 -54817418 + L1MC1 LINE L1 5772 6322 -11 217 337 163 34 chr6 127598631 127599219 -54816023 + L2 LINE L2 2031 2694 -620 386 244 11 0 chr6 127599219 127599309 -54815933 + MER94 DNA DNA 25 115 -19 408 336 29 79 chr6 127599334 127599715 -54815527 + L2 LINE L2 2813 3174 -98 251 269 0 0 chr6 127599994 127600061 -54815181 + A-rich Low_complexity Low_complexity 1 67 0 227 313 100 25 chr6 127601840 127601920 -54813322 + L2 LINE L2 3140 3225 -47 1155 277 84 69 chr6 127602104 127602873 -54812369 + L1MC4a LINE L1 5534 6314 -1774 201 245 57 0 chr6 127603384 127603437 -54811805 - MIR SINE MIR -32 230 175 4244 243 104 61 chr6 127603742 127604225 -54811017 + L1MEc LINE L1 38 499 -5716 983 224 23 9 chr6 127604225 127604439 -54810803 + MER20 DNA MER1_type 1 217 -2 4244 243 104 61 chr6 127604439 127606005 -54809237 + L1MEc LINE L1 499 1997 -4218 2276 123 0 0 chr6 127606005 127606314 -54808928 + AluSx SINE Alu 2 310 -2 4244 243 104 61 chr6 127606314 127606564 -54808678 + L1MEc LINE L1 1997 2235 -3980 1520 212 7 20 chr6 127606564 127606870 -54808372 - AluJo SINE Alu -10 302 1 4244 243 104 61 chr6 127606870 127607515 -54807727 + L1MEc LINE L1 2235 3088 -3127 18145 92 10 0 chr6 127607515 127610858 -54804384 - L1PA7 LINE L1 0 6154 2786 4244 243 104 61 chr6 127610858 127610935 -54804307 + L1MEc LINE L1 3088 3160 -3055 1926 99 57 0 chr6 127610935 127611197 -54804045 + AluSg SINE Alu 1 277 -33 479 163 27 0 chr6 127611197 127611344 -54803898 + (TG)n Simple_repeat Simple_repeat 1 151 0 1081 217 89 41 chr6 127611417 127612168 -54803074 + L1MEc LINE L1 3524 4431 -1784 1740 148 56 3 chr6 127612174 127612513 -54802729 - L1MA5 LINE L1 -5 6295 5939 827 255 168 12 chr6 127613348 127613610 -54801632 + MLT1H LTR MaLR 90 441 -108 25 51 0 0 chr6 127613650 127613689 -54801553 + AT_rich Low_complexity Low_complexity 1 39 0 2170 81 4 0 chr6 127613840 127614112 -54801130 + AluSp SINE Alu 1 273 -40 1856 160 14 3 chr6 127614357 127614651 -54800591 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr6 127615534 127615556 -54799686 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr6 127615713 127615753 -54799489 + AT_rich Low_complexity Low_complexity 1 40 0 2165 53 61 0 chr6 127615940 127616227 -54799015 + AluY SINE Alu 1 303 0 241 265 0 0 chr6 127616477 127616526 -54798716 + LTR28 LTR ERV1 13 61 -959 * 1926 163 39 28 chr6 127616494 127616881 -54798361 + MER61C LTR ERV1 14 404 -30 1871 185 68 50 chr6 127617093 127617552 -54797690 + MLT1C LTR MaLR 1 467 0 214 338 0 0 chr6 127618252 127618323 -54796919 - MIR SINE MIR -186 76 6 2460 169 28 33 chr6 127618368 127618764 -54796478 + MER41B LTR ERV1 105 353 -125 2036 93 40 10 chr6 127618764 127619066 -54796176 - AluSp SINE Alu -2 311 1 2460 169 28 33 chr6 127619066 127619180 -54796062 + MER41B LTR ERV1 353 466 -12 21 36 0 0 chr6 127619551 127619579 -54795663 + AT_rich Low_complexity Low_complexity 1 28 0 198 103 0 0 chr6 127619961 127619990 -54795252 + (T)n Simple_repeat Simple_repeat 1 29 0 2447 80 0 3 chr6 127621087 127621398 -54793844 + AluY SINE Alu 1 310 -1 24 67 0 0 chr6 127621788 127621833 -54793409 + AT_rich Low_complexity Low_complexity 1 45 0 352 234 75 0 chr6 127621999 127622093 -54793149 + MER58 DNA MER1_type 33 133 -208 6261 198 30 25 chr6 127622093 127624292 -54790950 + L1PA15 LINE L1 3960 6163 -2 226 310 35 0 chr6 127624341 127624428 -54790814 + L1M4 LINE L1 3370 3459 -2687 1977 255 87 25 chr6 127624712 127625574 -54789668 + L1ME1 LINE L1 2930 3850 -2296 2105 111 0 23 chr6 127625574 127625880 -54789362 + AluSx SINE Alu 1 299 -13 1977 255 87 25 chr6 127625880 127625906 -54789336 + L1ME1 LINE L1 3850 3873 -2273 580 239 73 28 chr6 127625912 127626130 -54789112 + L1ME1 LINE L1 4255 4482 -1664 1730 98 0 0 chr6 127626132 127626356 -54788886 + AluSx SINE Alu 1 224 -88 340 207 72 9 chr6 127626357 127626468 -54788774 + L1ME1 LINE L1 4774 4891 -1255 1660 138 4 36 chr6 127626499 127626774 -54788468 + AluSx SINE Alu 1 266 -46 25 0 0 0 chr6 127626790 127626815 -54788427 + AT_rich Low_complexity Low_complexity 1 25 0 1036 234 108 16 chr6 127626815 127627186 -54788056 + L1ME1 LINE L1 5644 6048 -118 2301 170 17 12 chr6 127627224 127627636 -54787606 + MER44D DNA MER2_type 19 487 -118 583 241 155 46 chr6 127627787 127628240 -54787002 + L1ME3 LINE L1 5657 6161 -1 22 0 0 0 chr6 127630158 127630180 -54785062 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 127630867 127630888 -54784354 + AT_rich Low_complexity Low_complexity 1 21 0 1516 139 146 26 chr6 127630956 127631258 -54783984 + MER7A DNA MER2_type 2 337 -9 1217 78 0 0 chr6 127631352 127631518 -54783724 - L1PA10 LINE L1 0 6168 6003 2139 89 0 7 chr6 127632236 127632559 -54782683 + AluSc SINE Alu 1 321 0 227 359 76 23 chr6 127634260 127634391 -54780851 - MIR3 SINE MIR -6 202 65 305 158 184 0 chr6 127634479 127634555 -54780687 + LTR54B LTR ERV1 2 91 -407 1359 184 199 5 chr6 127634559 127634951 -54780291 + LTR54B LTR ERV1 27 494 -4 2070 98 4 0 chr6 127637069 127637344 -54777898 + AluSg SINE Alu 1 276 -34 362 145 14 0 chr6 127637454 127637523 -54777719 - Charlie4 DNA MER1_type -1850 111 42 261 261 76 76 chr6 127638411 127638595 -54776647 + MIR SINE MIR 40 223 -39 30 77 0 0 chr6 127641197 127641262 -54773980 + AT_rich Low_complexity Low_complexity 1 65 0 29 28 0 0 chr6 127642126 127642162 -54773080 + AT_rich Low_complexity Low_complexity 1 36 0 235 281 250 0 chr6 127642280 127642408 -54772834 - MIR SINE MIR -59 203 44 22 0 0 0 chr6 127644972 127644994 -54770248 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr6 127645751 127645787 -54769455 + AT_rich Low_complexity Low_complexity 1 36 0 1534 156 94 0 chr6 127645790 127646046 -54769196 + AluJb SINE Alu 1 280 -32 757 155 0 0 chr6 127646092 127646208 -54769034 - FLAM_C SINE Alu -27 116 1 477 331 40 89 chr6 127646300 127646672 -54768570 - L2 LINE L2 -50 3222 2869 2324 55 20 3 chr6 127646911 127647204 -54768038 + AluY SINE Alu 1 298 -13 3861 99 11 2 chr6 127647414 127647967 -54767275 - L1PA14 LINE L1 -4 6157 5600 3861 165 65 16 chr6 127649151 127649727 -54765515 + MER6B DNA MER2_type 39 4294967277 -884 1954 123 49 0 chr6 127649727 127650012 -54765230 - AluSx SINE Alu -13 299 1 3861 165 65 16 chr6 127650012 127650254 -54764988 + MER6B DNA MER2_type -20 209 -1 336 133 0 0 chr6 127650362 127650422 -54764820 + (CA)n Simple_repeat Simple_repeat 2 61 0 312 27 0 0 chr6 127650422 127650459 -54764783 + (GA)n Simple_repeat Simple_repeat 2 38 0 210 307 0 53 chr6 127651718 127651793 -54763449 - L3 LINE CR1 -2 1575 1505 2103 122 82 68 chr6 127651935 127652363 -54762879 - Tigger2a DNA MER2_type 0 434 1 24 0 0 0 chr6 127653280 127653304 -54761938 + AT_rich Low_complexity Low_complexity 1 24 0 1425 182 20 34 chr6 127654124 127654420 -54760822 - AluJo SINE Alu -18 294 3 847 138 0 0 chr6 127655382 127655512 -54759730 - FLAM_C SINE Alu -3 130 1 399 303 52 39 chr6 127656814 127656969 -54758273 - MIR3 SINE MIR -36 172 16 2095 106 3 3 chr6 127658187 127658480 -54756762 - AluSq SINE Alu -20 293 1 321 185 0 0 chr6 127658939 127659004 -54756238 + (TG)n Simple_repeat Simple_repeat 2 66 0 260 64 0 0 chr6 127659004 127659051 -54756191 + LTR66 LTR ERVL 394 440 -170 232 106 0 0 chr6 127659014 127659061 -54756181 - LTR66 LTR ERVL -171 439 393 * 511 295 77 53 chr6 127659796 127660172 -54755070 + LTR67 LTR ERVL 165 549 -8 319 336 38 67 chr6 127660281 127660519 -54754723 - L2 LINE L2 -481 2833 2603 22 56 0 0 chr6 127660622 127660658 -54754584 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr6 127660705 127660731 -54754511 + AT_rich Low_complexity Low_complexity 1 26 0 2092 136 0 3 chr6 127660820 127661130 -54754112 + AluSx SINE Alu 1 309 -3 640 27 0 0 chr6 127661152 127661227 -54754015 + L1PA5 LINE L1 6072 6146 -8 204 83 56 0 chr6 127661236 127661272 -54753970 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 398 305 254 0 chr6 127661276 127661453 -54753789 + MIR SINE MIR 40 261 -1 334 303 33 20 chr6 127661498 127661650 -54753592 + L1 LINE L1 5245 5398 -748 269 289 0 0 chr6 127661787 127661863 -54753379 + (TA)n Simple_repeat Simple_repeat 2 77 0 245 307 80 11 chr6 127662403 127662491 -54752751 - MER5A DNA MER1_type -62 127 34 189 171 0 0 chr6 127662663 127662698 -54752544 + (CA)n Simple_repeat Simple_repeat 2 36 0 40 67 0 0 chr6 127662733 127662808 -54752434 + AT_rich Low_complexity Low_complexity 1 75 0 34 24 0 0 chr6 127663547 127663588 -54751654 + AT_rich Low_complexity Low_complexity 1 41 0 2172 102 10 0 chr6 127663614 127663917 -54751325 - AluSp SINE Alu -7 306 1 198 0 0 0 chr6 127664034 127664056 -54751186 + (A)n Simple_repeat Simple_repeat 1 22 0 1652 113 0 66 chr6 127664058 127664361 -54750881 + AluSc SINE Alu 24 308 0 2151 99 3 3 chr6 127664541 127664833 -54750409 + AluSq SINE Alu 1 292 -21 339 279 120 26 chr6 127664985 127665178 -54750064 + L1M4c LINE L1 1528 1887 -856 649 163 12 75 chr6 127665533 127665693 -54749549 + L1M4 LINE L1 4925 5074 -1072 1295 200 72 107 chr6 127665805 127666264 -54748978 + LTR10B LTR ERV1 91 533 -14 2496 225 95 52 chr6 127666273 127667277 -54747965 + HERVI LTR ERV1 11 837 -5812 1680 256 8 5 chr6 127667319 127667797 -54747445 + HERVI LTR ERV1 3691 4065 -2584 946 214 0 25 chr6 127667792 127667993 -54747249 + HERVI LTR ERV1 5237 5432 -2353 * 788 265 80 22 chr6 127668030 127668373 -54746869 + HERVI LTR ERV1 3077 6004 -1781 4852 223 13 15 chr6 127668554 127669840 -54745402 + LTR10B-int LTR ERV1 5313 6648 -1 1495 175 73 121 chr6 127669872 127670211 -54745031 + LTR10B LTR ERV1 91 402 -145 2277 93 3 0 chr6 127670211 127670511 -54744731 + AluSc SINE Alu 1 301 -8 1495 175 73 121 chr6 127670511 127670651 -54744591 + LTR10B LTR ERV1 402 547 0 1801 179 0 10 chr6 127670655 127670957 -54744285 - AluJb SINE Alu -13 299 1 4204 118 48 8 chr6 127671472 127672091 -54743151 + LTR9B LTR ERV1 1 644 0 41307 129 24 9 chr6 127672091 127680712 -54734530 + HUERS-P3 LTR ERV1 1 8907 -12 267 31 0 0 chr6 127681806 127681838 -54733404 + (CA)n Simple_repeat Simple_repeat 2 33 0 2691 157 52 0 chr6 127682003 127682468 -54732774 + LTR9B LTR ERV1 28 516 -128 790 93 34 17 chr6 127682592 127682710 -54732532 + LTR9B LTR ERV1 525 644 0 5028 81 8 23 chr6 127682955 127683599 -54731643 + MER51A LTR ERV1 1 634 0 222 264 116 4 chr6 127683805 127683906 -54731336 - MIR SINE MIR -68 140 25 249 296 35 76 chr6 127683978 127684150 -54731092 + MIR SINE MIR 7 171 -91 21 57 0 0 chr6 127684155 127684190 -54731052 + AT_rich Low_complexity Low_complexity 1 35 0 219 196 72 87 chr6 127684407 127684545 -54730697 + MIR SINE MIR 127 262 0 243 227 39 71 chr6 127684571 127684725 -54730517 + L1MC5 LINE L1 7763 7911 -50 766 230 28 11 chr6 127684903 127685081 -54730161 + L1MB8 LINE L1 5966 6146 -32 201 74 0 0 chr6 127685123 127685150 -54730092 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1262 147 89 0 chr6 127685190 127685414 -54729828 - MSTA LTR MaLR -163 265 22 220 264 142 38 chr6 127685529 127685635 -54729607 + L2 LINE L2 2586 2702 -612 * 414 336 93 68 chr6 127685604 127685970 -54729272 + L2 LINE L2 2898 3272 0 2335 51 48 0 chr6 127686349 127686642 -54728600 + AluY SINE Alu 2 308 -3 187 200 0 60 chr6 127687285 127687335 -54727907 + L2 LINE L2 3267 3313 0 2489 116 41 8 chr6 127688638 127689001 -54726241 + THE1C LTR MaLR 1 375 0 2017 210 30 30 chr6 127690095 127690562 -54724680 + MLT1C LTR MaLR 1 467 0 3417 209 115 86 chr6 127690563 127691194 -54724048 + L1MC3 LINE L1 6369 6980 -805 195 100 0 0 chr6 127691194 127691224 -54724018 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3417 209 115 86 chr6 127691224 127691283 -54723959 + L1MC3 LINE L1 6980 7036 -749 354 207 0 69 chr6 127691283 127691370 -54723872 + MLT1F1 LTR MaLR 44 124 -443 3417 209 115 86 chr6 127691370 127691823 -54723419 + L1MC3 LINE L1 7036 7635 -150 526 237 121 35 chr6 127691798 127692030 -54723212 + L1MC3 LINE L1 6984 7235 -550 * 630 0 0 0 chr6 127692062 127692132 -54723110 + (TG)n Simple_repeat Simple_repeat 2 71 0 1677 127 4 8 chr6 127692139 127692383 -54722859 - AluSq SINE Alu -70 243 1 380 246 148 54 chr6 127692438 127692641 -54722601 - HAL1 LINE L1 -2273 234 13 287 261 99 36 chr6 127692707 127692818 -54722424 - L1ME LINE L1 -332 5789 5672 617 214 110 7 chr6 127692870 127693024 -54722218 + MIR SINE MIR 92 261 -1 3687 79 0 0 chr6 127693341 127693808 -54721434 - MER41A LTR ERV1 -87 467 1 12389 95 43 14 chr6 127693808 127694586 -54720656 - MER41A-int LTR ERV1 -2 5944 5189 2126 129 0 3 chr6 127694586 127694881 -54720361 - AluSg SINE Alu -16 294 1 12389 95 43 14 chr6 127694881 127695904 -54719338 - MER41A-int LTR ERV1 -757 5189 4092 * 15028 120 106 54 chr6 127695886 127697492 -54717750 - MER41A-int LTR ERV1 -2189 3757 2235 2296 90 0 7 chr6 127697492 127697793 -54717449 + AluY SINE Alu 1 299 -12 15028 120 106 54 chr6 127697793 127699674 -54715568 - MER41A-int LTR ERV1 -3711 2235 3 1052 90 0 0 chr6 127699676 127699820 -54715422 - MER41A LTR ERV1 0 635 492 2440 68 0 0 chr6 127699976 127700271 -54714971 + AluY SINE Alu 2 296 -15 22 0 0 0 chr6 127700816 127700838 -54714404 + AT_rich Low_complexity Low_complexity 1 22 0 977 311 190 18 chr6 127702031 127702430 -54712812 + L1MDa LINE L1 408 957 -5583 6307 209 64 51 chr6 127702446 127704137 -54711105 + L1MDa LINE L1 1659 3327 -3213 2181 87 13 27 chr6 127704137 127704436 -54710806 + AluY SINE Alu 1 295 -16 6307 209 64 51 chr6 127704436 127704698 -54710544 + L1MDa LINE L1 3327 3584 -2956 2260 78 27 0 chr6 127704698 127704991 -54710251 + AluSq SINE Alu 1 301 -12 6307 209 64 51 chr6 127704991 127705236 -54710006 + L1MDa LINE L1 3584 3824 -2716 2195 120 0 0 chr6 127705236 127705535 -54709707 + AluSq SINE Alu 1 299 -14 6307 209 64 51 chr6 127705535 127706323 -54708919 + L1MDa LINE L1 3824 4601 -1939 2186 93 11 0 chr6 127706323 127706601 -54708641 + AluSp SINE Alu 1 281 -32 474 65 0 0 chr6 127706609 127706671 -54708571 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 6307 209 64 51 chr6 127706671 127706991 -54708251 + L1MDa LINE L1 4607 5017 -1523 512 256 88 14 chr6 127707200 127707231 -54708011 + L1MDa LINE L1 5336 5363 -1177 2763 213 49 19 chr6 127707231 127707818 -54707424 + MER77 LTR ERV1 1 605 0 512 256 88 14 chr6 127707818 127708001 -54707241 + L1MDa LINE L1 5363 5566 -974 1430 188 10 26 chr6 127708005 127708313 -54706929 + AluJo SINE Alu 1 303 -9 364 156 0 0 chr6 127708362 127708426 -54706816 + Alu SINE Alu 238 301 -1 2320 89 0 0 chr6 127708428 127708719 -54706523 + AluSg SINE Alu 3 293 -17 630 125 0 21 chr6 127708719 127708815 -54706427 + FLAM_A SINE Alu 44 137 -5 4231 141 55 19 chr6 127708863 127709560 -54705682 + LTR30 LTR ERV1 1 722 0 47928 105 9 5 chr6 127709560 127715994 -54699248 + HERV30 LTR ERV1 1 6456 -1801 4387 117 132 28 chr6 127716094 127717559 -54697683 - MER41D-int LTR ERV1 -4268 1678 14 261 215 26 18 chr6 127717659 127717781 -54697461 - MER41D LTR ERV1 -2 552 492 18187 101 3 3 chr6 127718250 127721611 -54693631 - HERV30 LTR ERV1 -4893 3364 1 4140 145 55 19 chr6 127721611 127722308 -54692934 - LTR30 LTR ERV1 0 722 1 630 125 0 21 chr6 127722356 127722452 -54692790 - FLAM_A SINE Alu -5 137 44 2447 71 0 3 chr6 127722452 127722746 -54692496 - AluSg SINE Alu -17 293 1 33 66 0 0 chr6 127723561 127723622 -54691620 + AT_rich Low_complexity Low_complexity 1 61 0 2194 83 10 13 chr6 127723660 127723961 -54691281 - AluY SINE Alu -11 300 1 409 221 124 28 chr6 127724105 127724250 -54690992 + MER5C DNA MER1_type 1 159 -165 21 57 0 0 chr6 127724753 127724788 -54690454 + AT_rich Low_complexity Low_complexity 1 35 0 22362 109 15 8 chr6 127725751 127728829 -54686413 + LTR30-int LTR ERV1 3405 6502 -1755 250 163 0 0 chr6 127728836 127728879 -54686363 + LTR30-int LTR ERV1 5011 5053 -533 8532 197 24 23 chr6 127728907 127730655 -54684587 + LTR30-int LTR ERV1 6509 8257 0 4176 158 40 6 chr6 127730655 127731353 -54683889 + LTR30 LTR ERV1 1 722 0 648 170 13 66 chr6 127731358 127731470 -54683772 + L1MD1 LINE L1 5194 5294 -864 2145 128 3 0 chr6 127731470 127731774 -54683468 + AluSx SINE Alu 3 307 -5 648 170 13 66 chr6 127731774 127731890 -54683352 + L1MD1 LINE L1 5294 5415 -743 * 5696 165 48 54 chr6 127731887 127733086 -54682156 + L1MCa LINE L1 18 1209 -5217 457 181 0 0 chr6 127733111 127733183 -54682059 + AluSg/x SINE Alu 209 280 -32 327 25 0 0 chr6 127733183 127733223 -54682019 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 297 136 0 0 chr6 127733230 127733274 -54681968 + L1MCa LINE L1 1208 1251 -5175 * 933 214 39 12 chr6 127733264 127733521 -54681721 + L1MC/D LINE L1 4963 5226 -920 1290 161 18 9 chr6 127733521 127733816 -54681426 - MER2 DNA MER2_type 0 345 2 2152 127 33 77 chr6 127733817 127734279 -54680963 + L1MC/D LINE L1 5225 5666 -667 1456 232 56 76 chr6 127734280 127734999 -54680243 + MER49 LTR ERV1 10 923 0 1388 358 0 99 chr6 127734999 127735230 -54680012 + L1MC1 LINE L1 5656 5915 -418 1388 175 0 32 chr6 127735230 127735268 -54679974 + L1MC1 LINE L1 6091 6129 -204 1766 186 36 27 chr6 127735268 127735601 -54679641 + MER1B DNA MER1_type 1 336 -1 1388 175 0 32 chr6 127735601 127735804 -54679438 + L1MC1 LINE L1 6129 6328 -5 2609 169 118 32 chr6 127735823 127736444 -54678798 + L1MD1 LINE L1 5431 6104 -138 342 143 0 0 chr6 127736451 127736514 -54678728 + L1MD1 LINE L1 6179 6241 -1 2445 75 0 0 chr6 127736548 127736841 -54678401 - AluY SINE Alu -18 293 1 1181 238 142 54 chr6 127737355 127737821 -54677421 + MLT2B1 LTR ERVL 1 507 -13 1507 164 35 55 chr6 127738288 127738599 -54676643 + AluJb SINE Alu 1 305 -7 276 232 172 80 chr6 127738726 127738976 -54676266 + L1ME LINE L1 5320 5592 -529 762 156 41 0 chr6 127738979 127739101 -54676141 + FLAM_A SINE Alu 11 137 -5 27 29 0 0 chr6 127739597 127739631 -54675611 + AT_rich Low_complexity Low_complexity 1 34 0 260 202 124 45 chr6 127739937 127740026 -54675216 - MER112 DNA MER1_type -6 254 159 183 304 29 14 chr6 127740318 127740387 -54674855 + L2 LINE L2 2872 2941 -331 767 200 104 72 chr6 127741201 127741390 -54673852 + MIR SINE MIR 2 202 -60 1963 139 3 16 chr6 127741390 127741700 -54673542 - AluSx SINE Alu -6 306 1 767 200 104 72 chr6 127741700 127741760 -54673482 + MIR SINE MIR 202 259 -3 1255 259 94 47 chr6 127742200 127742732 -54672510 + Charlie7 DNA MER1_type 5 561 -2051 299 214 83 0 chr6 127742726 127742810 -54672432 + Charlie7 DNA MER1_type 1679 1769 -843 * 354 211 120 23 chr6 127742886 127743019 -54672223 - MER104 DNA Tc2 -31 149 4 1687 104 126 33 chr6 127743503 127743773 -54671469 + AluSx SINE Alu 1 295 -17 1624 265 97 87 chr6 127745015 127746269 -54668973 + L2 LINE L2 1914 3168 -145 1483 196 17 10 chr6 127746269 127746570 -54668672 + AluJb SINE Alu 7 309 -3 1624 265 97 87 chr6 127746570 127746680 -54668562 + L2 LINE L2 3168 3275 -38 2227 111 3 0 chr6 127747027 127747324 -54667918 + AluSg SINE Alu 1 298 -12 2054 111 31 3 chr6 127747476 127747765 -54667477 + AluSx SINE Alu 1 297 -15 2169 101 0 14 chr6 127748454 127748751 -54666491 - AluSx SINE Alu -19 293 1 2089 133 0 0 chr6 127749061 127749361 -54665881 + AluSx SINE Alu 1 300 -12 2490 40 7 3 chr6 127749549 127749848 -54665394 + AluY SINE Alu 1 300 -11 26 64 0 0 chr6 127750214 127750261 -54664981 + AT_rich Low_complexity Low_complexity 1 47 0 26 74 0 0 chr6 127752759 127752813 -54662429 + GC_rich Low_complexity Low_complexity 1 54 0 276 30 0 0 chr6 127754833 127754866 -54660376 + (TG)n Simple_repeat Simple_repeat 2 34 0 26 30 0 0 chr6 127755127 127755160 -54660082 + AT_rich Low_complexity Low_complexity 1 33 0 609 220 30 8 chr6 127755499 127755631 -54659611 + MIR SINE MIR 97 231 -31 418 242 129 15 chr6 127756642 127756774 -54658468 - MIR SINE MIR -108 154 8 221 383 91 26 chr6 127756846 127757264 -54657978 - L2 LINE L2 -2044 1270 826 473 339 34 20 chr6 127757277 127757412 -54657830 + LTR16B LTR ERVL 1 133 -331 1129 152 28 5 chr6 127757412 127757623 -54657619 - L1MA4 LINE L1 0 6300 6085 473 339 34 20 chr6 127757623 127757905 -54657337 + LTR16B LTR ERVL 133 464 0 1100 158 0 11 chr6 127758121 127758304 -54656938 + AluSx SINE Alu 1 181 -131 22 35 0 0 chr6 127759462 127759491 -54655751 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr6 127759581 127759623 -54655619 + AT_rich Low_complexity Low_complexity 1 42 0 2324 106 0 3 chr6 127761736 127762047 -54653195 - AluSg SINE Alu 0 310 1 33 56 0 0 chr6 127762306 127762360 -54652882 + AT_rich Low_complexity Low_complexity 1 54 0 204 301 27 0 chr6 127763250 127763323 -54651919 + MIR SINE MIR 138 212 -50 602 213 92 100 chr6 127763408 127763495 -54651747 - MIR SINE MIR -24 238 152 2313 95 0 3 chr6 127763495 127763800 -54651442 + AluSx SINE Alu 1 304 -8 602 213 92 100 chr6 127763800 127763952 -54651290 - MIR SINE MIR -110 152 1 686 266 132 77 chr6 127764341 127764759 -54650483 + L1ME4a LINE L1 5468 5908 -213 1243 172 10 0 chr6 127764925 127765134 -54650108 + MER2 DNA MER2_type 1 211 -134 1636 163 109 0 chr6 127765166 127765442 -54649800 - AluJo SINE Alu -6 306 1 256 274 0 0 chr6 127765491 127765542 -54649700 + MER2 DNA MER2_type 290 340 -5 292 0 70 0 chr6 127766583 127766626 -54648616 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 1766 165 4 0 chr6 127766626 127766905 -54648337 - AluJb SINE Alu -32 280 1 182 281 132 33 chr6 127767586 127767707 -54647535 - MIR SINE MIR -123 139 7 502 262 248 10 chr6 127767717 127767923 -54647319 - MIR SINE MIR -1 261 7 237 204 111 0 chr6 127768275 127768329 -54646913 - L2 LINE L2 -2 3311 3252 187 255 0 20 chr6 127768352 127768403 -54646839 + L3 LINE CR1 1283 1332 -245 219 293 232 0 chr6 127768921 127769003 -54646239 - MIR SINE MIR -78 130 30 552 165 0 68 chr6 127769701 127769804 -54645438 + FLAM_A SINE Alu 1 96 -46 429 255 0 0 chr6 127771109 127771203 -54644039 + MIR3 SINE MIR 76 169 -39 259 260 32 89 chr6 127771328 127771451 -54643791 + MLT1H LTR MaLR 60 175 -374 2156 80 0 61 chr6 127771463 127771679 -54643563 - L1PA15 LINE L1 0 6165 5972 180 0 0 0 chr6 127771679 127771699 -54643543 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2156 80 0 61 chr6 127771699 127771793 -54643449 - L1PA15 LINE L1 -193 5972 5874 1954 160 3 0 chr6 127772898 127773204 -54642038 + AluSx SINE Alu 1 307 -5 2026 145 3 3 chr6 127773270 127773580 -54641662 - AluSx SINE Alu -2 310 1 36 40 0 0 chr6 127773582 127773632 -54641610 + AT_rich Low_complexity Low_complexity 1 50 0 1906 177 3 0 chr6 127773727 127774032 -54641210 + AluJb SINE Alu 1 306 -6 506 168 0 29 chr6 127774032 127774169 -54641073 + GA-rich Low_complexity Low_complexity 1 133 0 4523 155 41 56 chr6 127775231 127775486 -54639756 + L1MB7 LINE L1 4968 5225 -959 2318 112 0 0 chr6 127775486 127775789 -54639453 + AluSg SINE Alu 1 303 -7 4523 155 41 56 chr6 127775789 127776742 -54638500 + L1MB7 LINE L1 5225 6148 -36 670 191 9 0 chr6 127776863 127776973 -54638269 + FLAM_C SINE Alu 1 111 -32 210 191 0 0 chr6 127777280 127777327 -54637915 + (TTA)n Simple_repeat Simple_repeat 1 47 0 4392 165 83 28 chr6 127777349 127778252 -54636990 - L1MA9 LINE L1 -22 6290 5338 504 174 16 99 chr6 127778338 127778459 -54636783 + MIR3 SINE MIR 59 169 -39 579 364 46 35 chr6 127778728 127779318 -54635924 + L2 LINE L2 2183 2816 -498 902 285 57 14 chr6 127779322 127779603 -54635639 - LTR16A LTR ERVL -20 430 138 214 386 10 20 chr6 127779798 127779899 -54635343 + L2 LINE L2 3121 3220 -52 1834 104 0 0 chr6 127779926 127780166 -54635076 + AluSc SINE Alu 33 272 -37 228 354 109 10 chr6 127780193 127780385 -54634857 + L2 LINE L2 2840 3050 -222 202 365 12 24 chr6 127780889 127780974 -54634268 + L2 LINE L2 3137 3220 -52 1854 108 8 0 chr6 127781001 127781252 -54633990 + AluSc SINE Alu 33 285 -24 245 354 109 10 chr6 127781272 127781464 -54633778 + L2 LINE L2 2840 3050 -222 230 202 14 28 chr6 127781927 127782005 -54633237 - Charlie8 DNA MER1_type -1001 1416 1367 261 325 0 0 chr6 127782038 127782115 -54633127 - Charlie8 DNA MER1_type -2338 79 3 1563 168 77 31 chr6 127782326 127782612 -54632630 + AluJb SINE Alu 1 299 -3 216 0 0 0 chr6 127782629 127782653 -54632589 + (T)n Simple_repeat Simple_repeat 1 24 0 1748 147 10 7 chr6 127782917 127783209 -54632033 + AluJb SINE Alu 1 293 -19 24 32 0 0 chr6 127783888 127783919 -54631323 + AT_rich Low_complexity Low_complexity 1 31 0 1956 78 37 87 chr6 127784067 127784388 -54630854 - AluSx SINE Alu -7 305 1 333 0 0 0 chr6 127785094 127785131 -54630111 + (CA)n Simple_repeat Simple_repeat 1 37 0 1012 186 25 59 chr6 127786622 127786858 -54628384 + AluJo SINE Alu 82 309 -3 22 0 0 0 chr6 127787126 127787148 -54628094 + AT_rich Low_complexity Low_complexity 1 22 0 1012 103 0 0 chr6 127787148 127787274 -54627968 - FLAM_C SINE Alu -7 126 1 1958 220 44 14 chr6 127788527 127789027 -54626215 - L1MB7 LINE L1 0 6184 5670 793 324 48 9 chr6 127789139 127789549 -54625693 + L2 LINE L2 2670 3094 -219 1242 103 0 43 chr6 127789553 127789702 -54625540 - AluSq SINE Alu -18 295 141 6553 66 10 0 chr6 127789702 127790474 -54624768 + LTR17 LTR ERV1 1 780 0 1242 103 0 43 chr6 127790474 127790491 -54624751 - AluSq SINE Alu -172 141 135 738 212 8 0 chr6 127790491 127790623 -54624619 - FLAM_C SINE Alu 0 133 1 1242 103 0 43 chr6 127790623 127790639 -54624603 - AluSq SINE Alu -178 135 120 499 211 130 0 chr6 127790659 127790782 -54624460 + L2 LINE L2 3172 3310 -3 25 31 0 0 chr6 127790881 127790913 -54624329 + AT_rich Low_complexity Low_complexity 1 32 0 454 264 94 40 chr6 127791323 127791524 -54623718 + LTR16C LTR ERVL 277 488 -3 867 142 8 15 chr6 127792241 127792375 -54622867 - FLAM_C SINE Alu 0 133 1 483 320 107 29 chr6 127792791 127793035 -54622207 + MLT1K LTR MaLR 141 403 -185 1679 197 7 0 chr6 127793039 127793349 -54621893 + AluJb SINE Alu 1 312 0 259 329 0 0 chr6 127793349 127793434 -54621808 + GA-rich Low_complexity Low_complexity 1 85 0 2146 82 0 57 chr6 127793455 127793573 -54621669 + AluSq SINE Alu 1 124 -189 2371 94 3 3 chr6 127793573 127793880 -54621362 + AluSp SINE Alu 1 307 -6 2146 82 0 57 chr6 127793880 127794076 -54621166 + AluSq SINE Alu 124 297 -16 251 293 24 116 chr6 127794088 127794252 -54620990 + MLT1K LTR MaLR 439 587 -1 787 286 55 35 chr6 127795870 127796213 -54619029 - LTR67 LTR ERVL -22 535 186 457 214 145 8 chr6 127796724 127796841 -54618401 + HsTC2 DNA Tc2 2 134 -1764 525 194 120 31 chr6 127796872 127797063 -54618179 + HsTC2 DNA Tc2 1688 1895 -3 2282 308 79 47 chr6 127797095 127797747 -54617495 - ERVL LTR ERVL -382 5382 4752 922 228 11 11 chr6 127797747 127797936 -54617306 - MER5A DNA MER1_type 0 189 1 2282 308 79 47 chr6 127797936 127798122 -54617120 - ERVL LTR ERVL -1012 4752 4573 484 266 73 0 chr6 127798122 127798246 -54616996 + MER94 DNA DNA 1 133 -1 2282 308 79 47 chr6 127798246 127798311 -54616931 - ERVL LTR ERVL -1191 4573 4512 2373 95 20 0 chr6 127798311 127798617 -54616625 + AluSx SINE Alu 1 312 0 2282 308 79 47 chr6 127798617 127798994 -54616248 - ERVL LTR ERVL -1252 4512 4059 207 0 0 0 chr6 127799004 127799027 -54616215 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1384 271 86 33 chr6 127799029 127799602 -54615640 - MLT1L LTR MaLR -5 610 8 2006 313 120 42 chr6 127799926 127801365 -54613877 - ERVL LTR ERVL -2096 3668 2117 1987 151 0 7 chr6 127801492 127801790 -54613452 + AluJb SINE Alu 1 296 -16 2177 104 0 10 chr6 127801991 127802316 -54612926 - AluSx SINE Alu 0 322 1 280 257 29 0 chr6 127802320 127802390 -54612852 - ERVL LTR ERVL -4107 1547 1476 356 380 38 6 chr6 127802732 127803048 -54612194 - ERVL LTR ERVL -4607 1157 832 4445 123 24 0 chr6 127803487 127804114 -54611128 + L1PA16 LINE L1 5525 6166 0 283 274 222 7 chr6 127804125 127804260 -54610982 - MLT1L LTR MaLR -415 200 37 1902 167 0 3 chr6 127804550 127804844 -54610398 + AluJo SINE Alu 1 293 -19 622 203 6 85 chr6 127804977 127805036 -54610206 + MLT1H LTR MaLR 3 65 -484 2381 83 0 0 chr6 127805036 127805337 -54609905 + AluY SINE Alu 1 301 -10 622 203 6 85 chr6 127805337 127805459 -54609783 + MLT1H LTR MaLR 65 214 -335 244 233 0 0 chr6 127805506 127805566 -54609676 + T-rich Low_complexity Low_complexity 1 60 0 394 137 82 0 chr6 127805566 127805639 -54609603 + MLT1H LTR MaLR 471 549 0 488 177 13 0 chr6 127805743 127805822 -54609420 - AluJ/FLAM SINE Alu -228 84 5 274 225 107 22 chr6 127806143 127806321 -54608921 + Charlie7 DNA MER1_type 2405 2597 -15 2207 105 0 7 chr6 127806786 127807092 -54608150 - AluSx SINE Alu -8 304 1 1874 155 13 10 chr6 127809512 127809815 -54605427 - AluJb SINE Alu -8 304 1 322 247 111 74 chr6 127809818 127810008 -54605234 - L1MC/D LINE L1 -1983 5825 5629 331 316 63 26 chr6 127810083 127810273 -54604969 + L1ME LINE L1 5317 5513 -657 227 281 195 16 chr6 127810449 127810577 -54604665 - L2 LINE L2 0 3272 3122 195 129 0 0 chr6 127811077 127811108 -54604134 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 225 0 0 0 chr6 127811854 127811879 -54603363 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chr6 127811878 127811905 -54603337 + (GA)n Simple_repeat Simple_repeat 1 27 0 536 203 41 8 chr6 127813047 127813170 -54602072 - L2 LINE L2 -1 3312 3186 2053 108 3 33 chr6 127813511 127813816 -54601426 + AluSp SINE Alu 1 296 -17 273 303 148 19 chr6 127814205 127814367 -54600875 + MIR SINE MIR 20 202 -60 2573 53 0 3 chr6 127814692 127814995 -54600247 - AluY SINE Alu -9 302 1 365 230 133 9 chr6 127816423 127816536 -54598706 + MARNA DNA Mariner 200 326 -260 656 290 99 5 chr6 127816895 127817116 -54598126 + MIR SINE MIR 19 260 -2 2327 122 15 64 chr6 127817341 127817733 -54597509 - THE1C LTR MaLR 0 375 3 415 307 39 0 chr6 127817869 127817996 -54597246 - L3b LINE CR1 -121 1462 1331 736 20 10 20 chr6 127818388 127818487 -54596755 + (TTTTA)n Simple_repeat Simple_repeat 2 99 0 2169 101 0 0 chr6 127818491 127818769 -54596473 - AluSx SINE Alu -34 278 1 2119 82 0 4 chr6 127818980 127819249 -54595993 + AluY SINE Alu 1 268 -43 2077 107 0 0 chr6 127819299 127819571 -54595671 + AluSc SINE Alu 1 272 -37 270 0 0 0 chr6 127819575 127819605 -54595637 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2522 37 7 10 chr6 127819903 127820201 -54595041 + AluY SINE Alu 1 297 -14 705 122 0 0 chr6 127820426 127820516 -54594726 + FLAM_C SINE Alu 27 116 -27 273 57 0 0 chr6 127821270 127821305 -54593937 + 5S rRNA rRNA 56 90 -31 355 233 0 26 chr6 127822590 127822706 -54592536 + CT-rich Low_complexity Low_complexity 4 116 0 254 224 0 118 chr6 127822707 127822783 -54592459 + MER112 DNA MER1_type 194 260 0 2137 171 40 73 chr6 127823094 127823543 -54591699 + MLT1D LTR MaLR 1 463 -42 318 26 0 0 chr6 127823543 127823582 -54591660 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1989 115 4 14 chr6 127823583 127823861 -54591381 - AluSx SINE Alu -32 280 6 2137 171 40 73 chr6 127823861 127823931 -54591311 + MLT1D LTR MaLR 462 505 0 2471 78 0 3 chr6 127824271 127824577 -54590665 - AluY SINE Alu -6 305 1 227 267 27 13 chr6 127824815 127824890 -54590352 + MIR SINE MIR 68 143 -65 3537 135 54 99 chr6 127826274 127827065 -54588177 - L1MB3 LINE L1 0 6183 5428 189 0 0 0 chr6 127827784 127827805 -54587437 + (TA)n Simple_repeat Simple_repeat 1 21 0 1245 169 48 36 chr6 127827805 127828043 -54587199 - AluJo SINE Alu -18 294 51 432 271 8 8 chr6 127828204 127828333 -54586909 + L2 LINE L2 3184 3312 -1 201 74 0 0 chr6 127828335 127828362 -54586880 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 980 293 34 25 chr6 127828472 127828830 -54586412 + MLT1I LTR MaLR 49 409 0 2129 139 0 7 chr6 127829086 127829396 -54585846 - AluSx SINE Alu -2 310 3 214 260 0 0 chr6 127833204 127833254 -54581988 + MIR SINE MIR 92 141 -67 790 193 0 14 chr6 127833524 127833664 -54581578 - AluSq/x SINE Alu -172 140 3 2398 84 0 3 chr6 127834163 127834461 -54580781 - AluSg1 SINE Alu -12 297 1 1431 255 88 10 chr6 127835264 127835758 -54579484 + L2 LINE L2 2458 2986 -327 721 196 179 41 chr6 127835793 127836150 -54579092 - MLT1J LTR MaLR -43 468 5 568 284 99 38 chr6 127836155 127836447 -54578795 + L2 LINE L2 2997 3306 -7 2076 135 0 49 chr6 127836447 127836773 -54578469 + AluSx SINE Alu 1 310 -2 1939 169 39 6 chr6 127838531 127838868 -54576374 + MER7A DNA MER2_type 1 346 0 1842 199 100 30 chr6 127839074 127839546 -54575696 - MLT1D LTR MaLR 0 505 1 2348 110 0 3 chr6 127839644 127839952 -54575290 + AluSx SINE Alu 1 307 -5 234 0 0 0 chr6 127839982 127840008 -54575234 + (CA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr6 127840121 127840142 -54575100 + (A)n Simple_repeat Simple_repeat 1 21 0 2213 121 0 0 chr6 127840481 127840788 -54574454 - AluSg SINE Alu -2 308 2 350 287 30 46 chr6 127840796 127840994 -54574248 - MIR SINE MIR -50 212 20 205 200 25 0 chr6 127841347 127841387 -54573855 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 189 274 188 43 chr6 127841387 127841504 -54573738 - L2 LINE L2 0 3272 3139 1309 197 12 15 chr6 127842394 127842719 -54572523 - MER33 DNA MER1_type 0 324 1 2495 65 0 0 chr6 127842889 127843196 -54572046 + AluY SINE Alu 1 307 -4 693 269 96 36 chr6 127843268 127843709 -54571533 - LTR33A LTR ERVL -17 506 1 636 288 35 0 chr6 127844053 127844282 -54570960 - L2 LINE L2 -925 2389 2153 1738 144 46 36 chr6 127844966 127845271 -54569971 + AluJb SINE Alu 3 310 -2 256 263 0 0 chr6 127846319 127846404 -54568838 + (TATG)n Simple_repeat Simple_repeat 1 85 0 2032 132 0 42 chr6 127847503 127847813 -54567429 - AluSx SINE Alu -15 297 1 24 32 0 0 chr6 127847945 127847976 -54567266 + AT_rich Low_complexity Low_complexity 1 31 0 275 211 68 68 chr6 127848076 127848209 -54567033 - L1ME LINE L1 -328 5793 5661 557 0 29 0 chr6 127848294 127848362 -54566880 + (TTTTA)n Simple_repeat Simple_repeat 3 72 0 2089 112 0 4 chr6 127848364 127848642 -54566600 - AluSx SINE Alu -35 277 1 2525 62 10 3 chr6 127848681 127848990 -54566252 - AluSq SINE Alu -2 311 1 1137 237 12 7 chr6 127849176 127849663 -54565579 - MER82 DNA MER2_type 0 653 125 1643 173 17 28 chr6 127849666 127849955 -54565287 + AluJb SINE Alu 6 291 -21 697 61 86 0 chr6 127849955 127850118 -54565124 + (TA)n Simple_repeat Simple_repeat 2 178 0 381 22 0 0 chr6 127853104 127853150 -54562092 + (TG)n Simple_repeat Simple_repeat 2 47 0 262 271 221 0 chr6 127853748 127853870 -54561372 - MIR SINE MIR -30 232 84 666 236 69 15 chr6 127853872 127854075 -54561167 - LTR37A LTR ERV1 -125 301 88 553 200 48 8 chr6 127854085 127854210 -54561032 + FLAM_C SINE Alu 14 143 0 1770 103 110 14 chr6 127856576 127856857 -54558385 - AluSg SINE Alu -2 308 1 4182 236 64 47 chr6 127857235 127857455 -54557787 - L2 LINE L2 0 3313 3098 575 142 137 146 chr6 127857455 127857591 -54557651 - MER63A DNA MER1_type -1478 210 75 2055 112 31 7 chr6 127857591 127857885 -54557357 + AluJb SINE Alu 5 305 -7 575 142 137 146 chr6 127857885 127857960 -54557282 - MER63A DNA MER1_type -1613 75 1 4182 236 64 47 chr6 127857960 127858292 -54556950 - L2 LINE L2 -215 3098 2773 288 0 0 0 chr6 127858292 127858324 -54556918 + (TG)n Simple_repeat Simple_repeat 1 32 0 2087 98 11 4 chr6 127858324 127858601 -54556641 - AluSq SINE Alu -33 280 2 4182 236 64 47 chr6 127858601 127859681 -54555561 - L2 LINE L2 -539 2774 1636 1954 155 0 7 chr6 127860121 127860424 -54554818 - AluJo SINE Alu -11 301 1 1803 150 49 0 chr6 127860512 127860798 -54554444 - AluJb SINE Alu -2 310 11 2299 106 3 3 chr6 127860973 127861276 -54553966 - AluSx SINE Alu -9 303 1 1700 142 32 32 chr6 127861282 127861591 -54553651 - AluSx SINE Alu -3 309 1 2324 163 2 25 chr6 127863475 127863717 -54551525 - MLT1B LTR MaLR 0 390 159 2436 93 0 0 chr6 127863717 127864017 -54551225 + AluSc SINE Alu 1 300 -9 2324 163 2 25 chr6 127864017 127864173 -54551069 - MLT1B LTR MaLR -231 159 1 2430 189 18 113 chr6 127864375 127864413 -54550829 + MLT2B3 LTR ERVL 1 41 -513 2136 112 23 3 chr6 127864413 127864716 -54550526 + AluSq SINE Alu 1 309 -4 2430 189 18 113 chr6 127864716 127865223 -54550019 + MLT2B3 LTR ERVL 41 484 -70 399 21 0 0 chr6 127865223 127865271 -54549971 + (TG)n Simple_repeat Simple_repeat 2 49 0 2430 189 18 113 chr6 127865271 127865336 -54549906 + MLT2B3 LTR ERVL 484 554 0 1832 274 127 55 chr6 127865799 127867674 -54547568 + L1MC/D LINE L1 3000 5008 -1138 309 243 48 90 chr6 127867683 127867721 -54547521 + L1MC/D LINE L1 5417 5455 -707 2251 104 0 0 chr6 127867721 127868010 -54547232 - AluSc SINE Alu -20 289 1 2168 138 0 0 chr6 127868010 127868314 -54546928 - AluSx SINE Alu -7 305 1 309 243 48 90 chr6 127868314 127868440 -54546802 + L1MC/D LINE L1 5453 5574 -588 284 252 14 136 chr6 127868512 127868659 -54546583 + MLT1L LTR MaLR 135 263 -352 3123 108 18 26 chr6 127868813 127869155 -54546087 - L1PA16 LINE L1 0 6166 5828 2387 84 7 0 chr6 127869155 127869452 -54545790 - AluSq SINE Alu -14 299 1 3123 108 18 26 chr6 127869452 127869602 -54545640 - L1PA16 LINE L1 -338 5828 5678 474 268 60 33 chr6 127869622 127869844 -54545398 + MLT1L LTR MaLR 311 600 -15 2417 51 41 0 chr6 127870465 127870757 -54544485 - AluY SINE Alu -7 304 1 220 261 31 0 chr6 127871205 127871270 -54543972 + (TATAG)n Simple_repeat Simple_repeat 3 69 0 273 310 103 22 chr6 127871693 127871877 -54543365 - L2 LINE L2 -864 2450 2252 5521 108 49 16 chr6 127872026 127872904 -54542338 + L1PA16 LINE L1 5260 6166 0 2008 190 137 5 chr6 127872911 127873333 -54541909 - MLT1D LTR MaLR -27 478 1 1836 157 3 20 chr6 127874908 127875214 -54540028 - AluJo SINE Alu -5 307 7 2303 125 0 0 chr6 127876299 127876611 -54538631 - AluSx SINE Alu 0 312 1 37 23 0 0 chr6 127876654 127876698 -54538544 + AT_rich Low_complexity Low_complexity 1 44 0 699 79 11 0 chr6 127877360 127877449 -54537793 - Tigger3b DNA MER2_type -33 1208 1119 1139 232 52 80 chr6 127877459 127877924 -54537318 - MER101 LTR ERV1 -12 462 11 5566 134 74 39 chr6 127877956 127878168 -54537074 - Tigger3b DNA MER2_type -1928 1100 897 200 86 29 0 chr6 127878168 127878203 -54537039 + (TGAG)n Simple_repeat Simple_repeat 1 36 0 5566 134 74 39 chr6 127878203 127878719 -54536523 - Tigger3b DNA MER2_type -2131 897 320 2316 108 0 7 chr6 127878719 127879024 -54536218 - AluSx SINE Alu -9 303 1 5566 134 74 39 chr6 127879024 127879356 -54535886 - Tigger3b DNA MER2_type -2708 320 1 214 307 27 0 chr6 127879359 127879434 -54535808 + MIR SINE MIR 112 188 -74 593 285 55 17 chr6 127879453 127879688 -54535554 + MIR SINE MIR 19 262 0 1077 184 5 0 chr6 127880795 127880996 -54534246 + L1MB4 LINE L1 5973 6174 -6 212 291 23 0 chr6 127881852 127881938 -54533304 + CT-rich Low_complexity Low_complexity 1 88 0 212 211 16 148 chr6 127882012 127882140 -54533102 - MIR SINE MIR -64 198 88 203 156 0 0 chr6 127882369 127882401 -54532841 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 2138 108 0 78 chr6 127882565 127882932 -54532310 - AluSx SINE Alu 0 312 1 23 0 0 0 chr6 127883197 127883220 -54532022 + AT_rich Low_complexity Low_complexity 1 23 0 999 224 59 30 chr6 127883699 127883994 -54531248 + L1MB7 LINE L1 5878 6179 -5 2502 97 0 0 chr6 127884876 127885186 -54530056 + AluSx SINE Alu 1 310 -2 797 274 67 16 chr6 127885221 127885594 -54529648 + L1ME4a LINE L1 5552 5943 -178 180 111 0 0 chr6 127885597 127885624 -54529618 + (TG)n Simple_repeat Simple_repeat 1 27 0 851 305 88 3 chr6 127885681 127886012 -54529230 + LTR16A LTR ERVL 90 448 -2 1236 236 135 24 chr6 127886865 127887288 -54527954 + MLT1J LTR MaLR 1 470 -41 2053 146 0 9 chr6 127887944 127888259 -54526983 - AluSx SINE Alu 0 312 1 803 243 55 5 chr6 127888778 127888980 -54526262 - MER58C DNA MER1_type -3 212 1 1888 120 36 7 chr6 127889082 127889394 -54525848 + AluSx SINE Alu 1 320 0 21 36 0 0 chr6 127890282 127890310 -54524932 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr6 127891192 127891222 -54524020 + (CA)n Simple_repeat Simple_repeat 2 31 0 275 49 24 0 chr6 127891889 127891930 -54523312 + (TG)n Simple_repeat Simple_repeat 2 43 0 2527 11 42 7 chr6 127892774 127893060 -54522182 + AluY SINE Alu 1 296 -15 1622 226 76 29 chr6 127893390 127893811 -54521431 + LTR40a LTR ERVL 79 519 0 1681 166 0 21 chr6 127894047 127894337 -54520905 + AluJo SINE Alu 1 284 -28 2301 117 0 0 chr6 127895191 127895500 -54519742 + AluSc SINE Alu 1 309 0 917 103 0 0 chr6 127896549 127896675 -54518567 - AluSg/x SINE Alu 0 309 184 1873 140 27 3 chr6 127897104 127897396 -54517846 + AluSx SINE Alu 1 299 -13 1960 145 20 81 chr6 127898119 127898330 -54516912 - MLT1B LTR MaLR 0 390 213 2555 102 11 6 chr6 127898330 127898692 -54516550 - THE1B LTR MaLR 0 364 1 1960 145 20 81 chr6 127898692 127898874 -54516368 - MLT1B LTR MaLR -177 213 21 2085 150 118 0 chr6 127898893 127899274 -54515968 - MSTA LTR MaLR -2 426 1 435 317 60 0 chr6 127899344 127899511 -54515731 + MIR SINE MIR 17 193 -69 2319 102 3 0 chr6 127899709 127900013 -54515229 - AluSq SINE Alu -8 305 1 3386 71 21 5 chr6 127900576 127900972 -54514270 + MLT2A1 LTR ERVL 1 406 -38 225 0 0 0 chr6 127900972 127900997 -54514245 + (TA)n Simple_repeat Simple_repeat 1 25 0 3386 71 21 5 chr6 127900997 127901037 -54514205 + MLT2A1 LTR ERVL 406 444 0 1073 154 10 77 chr6 127901199 127901407 -54513835 + MLT1A1 LTR MaLR 1 194 -171 1056 210 0 5 chr6 127901410 127901605 -54513637 + MLT1A1 LTR MaLR 167 360 -5 366 220 22 11 chr6 127901925 127902016 -54513226 - LTR67 LTR ERVL -9 548 457 2146 141 7 0 chr6 127902042 127902346 -54512896 + AluSx SINE Alu 1 306 -6 180 234 43 0 chr6 127902727 127902774 -54512468 + L2 LINE L2 3204 3252 -20 196 267 22 0 chr6 127902918 127902963 -54512279 - L2 LINE L2 -16 3256 3211 4299 98 2 8 chr6 127903003 127903604 -54511638 + L1P LINE L1 1 597 -5549 18667 36 0 0 chr6 127903604 127906635 -54508607 + L1PA4 LINE L1 3142 6186 0 454 250 8 33 chr6 127906637 127906757 -54508485 + L2 LINE L2 3145 3261 -11 472 250 101 36 chr6 127908221 127908389 -54506853 + MIR SINE MIR 15 193 -69 4118 112 68 30 chr6 127908424 127908887 -54506355 - Tigger3(Golem) DNA MER2_type 0 3029 2528 1475 169 90 4 chr6 127908887 127909153 -54506089 + AluJo SINE Alu 1 289 -23 4118 112 68 30 chr6 127909153 127909414 -54505828 - Tigger3(Golem) DNA MER2_type -501 2528 2278 571 234 0 0 chr6 127909405 127909512 -54505730 - Tigger3(Golem) DNA MER2_type -2921 108 2 * 228 250 0 0 chr6 127909533 127909573 -54505669 + L2 LINE L2 3210 3249 -23 1155 103 0 0 chr6 127909756 127909902 -54505340 - AluSq/x SINE Alu -167 146 1 1597 188 0 56 chr6 127910406 127910726 -54504516 + AluJo SINE Alu 1 302 -10 476 234 9 0 chr6 127910954 127911061 -54504181 - L2 LINE L2 -6 3307 3200 1038 198 65 9 chr6 127911070 127911287 -54503955 - MER96B DNA MER1_type? -185 232 4 703 244 15 20 chr6 127911310 127911511 -54503731 + LTR16A LTR ERVL 14 213 -237 455 302 82 13 chr6 127911519 127911678 -54503564 + HERV16 LTR ERVL 1407 1576 -3420 733 184 20 20 chr6 127911697 127911849 -54503393 + MER5A DNA MER1_type 1 152 -37 1563 104 0 43 chr6 127911914 127912144 -54503098 + AluSg/x SINE Alu 83 302 -8 795 271 99 44 chr6 127912219 127912584 -54502658 + HERV16 LTR ERVL 2095 2479 -2517 2876 242 192 26 chr6 127912689 127912813 -54502429 - L2 LINE L2 -145 3168 3066 2073 113 39 0 chr6 127912813 127913095 -54502147 - AluSx SINE Alu -19 293 1 2876 242 192 26 chr6 127913095 127914454 -54500788 - L2 LINE L2 -247 3066 1433 596 266 30 0 chr6 127914530 127914699 -54500543 + MIR SINE MIR 71 244 -18 1725 135 0 12 chr6 127916569 127916821 -54498421 - AluSx SINE Alu -16 296 48 2357 103 0 0 chr6 127918177 127918479 -54496763 - AluSx SINE Alu -10 302 1 502 258 71 38 chr6 127918762 127919002 -54496240 + L1MC4 LINE L1 6765 7012 -1030 1290 140 77 27 chr6 127919066 127919287 -54495955 + MER46A DNA MER2_type 1 232 -4 1037 166 0 6 chr6 127920609 127920772 -54494470 - FRAM SINE Alu -15 161 1 28965 115 13 52 chr6 127923835 127930263 -54484979 - L1PA8 LINE L1 -2 6170 12 257 230 50 50 chr6 127930532 127930671 -54484571 + L1ME4a LINE L1 5982 6120 -1 731 89 0 0 chr6 127930748 127930849 -54484393 - AluSg/x SINE Alu -7 305 205 1937 97 109 0 chr6 127931043 127931310 -54483932 - AluSq SINE Alu -17 296 1 440 250 12 79 chr6 127932533 127932697 -54482545 + MLT1G1 LTR MaLR 443 595 0 269 231 0 15 chr6 127934209 127934274 -54480968 + MER20B DNA MER1_type 66 129 -654 247 298 61 53 chr6 127934508 127934622 -54480620 + L2 LINE L2 3153 3267 -5 2180 116 3 0 chr6 127935092 127935386 -54479856 - AluSx SINE Alu -17 295 1 202 373 91 9 chr6 127936156 127936266 -54478976 - L2 LINE L2 -7 3265 3147 203 213 21 0 chr6 127936565 127936612 -54478630 + GA-rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr6 127937602 127937631 -54477611 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 127938342 127938372 -54476870 + AT_rich Low_complexity Low_complexity 1 30 0 1536 160 27 40 chr6 127938547 127938847 -54476395 - AluJb SINE Alu -16 296 1 23 33 0 0 chr6 127939146 127939176 -54476066 + AT_rich Low_complexity Low_complexity 1 30 0 397 309 106 14 chr6 127939794 127940001 -54475241 + MIR SINE MIR 23 248 -14 260 237 129 36 chr6 127940109 127940136 -54475106 + L2 LINE L2 1890 1913 -1401 2084 106 31 0 chr6 127940136 127940428 -54474814 - AluSx SINE Alu -11 301 1 260 237 129 36 chr6 127940428 127940539 -54474703 + L2 LINE L2 1913 2041 -1273 214 282 97 39 chr6 127940589 127940692 -54474550 + L2 LINE L2 2170 2278 -1036 1363 241 88 41 chr6 127940714 127941217 -54474025 + L2 LINE L2 2467 2985 -287 197 218 36 18 chr6 127941299 127941354 -54473888 + L2 LINE L2 3215 3270 -2 449 234 103 7 chr6 127942087 127942232 -54473010 + MER103 DNA DNA 3 161 -5 289 221 118 59 chr6 127943921 127944057 -54471185 + MIR SINE MIR 54 197 -65 224 361 45 32 chr6 127945293 127945448 -54469794 - L2 LINE L2 -191 3081 2925 902 131 0 0 chr6 127945473 127945595 -54469647 - AluJb SINE Alu -188 124 3 2283 114 0 0 chr6 127946549 127946846 -54468396 - AluSc SINE Alu -12 297 1 2106 138 0 0 chr6 127947791 127948081 -54467161 - AluSx SINE Alu -20 292 3 2410 100 0 0 chr6 127951545 127951846 -54463396 + AluSx SINE Alu 1 301 -11 334 208 101 54 chr6 127951875 127952024 -54463218 + MER112 DNA MER1_type 94 249 -11 23 0 0 0 chr6 127952750 127952773 -54462469 + AT_rich Low_complexity Low_complexity 1 23 0 717 136 72 8 chr6 127953747 127953872 -54461370 + FLAM_C SINE Alu 1 133 -10 1883 117 8 11 chr6 127955321 127955587 -54459655 - AluJo SINE Alu -23 289 25 843 245 56 44 chr6 127956508 127956757 -54458485 + MIR SINE MIR 8 259 -3 666 114 84 69 chr6 127957792 127957923 -54457319 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr6 127957926 127957954 -54457288 + AT_rich Low_complexity Low_complexity 1 28 0 1267 117 0 0 chr6 127958143 127958358 -54456884 - AluSg/x SINE Alu 0 326 112 1204 105 0 0 chr6 127958360 127958512 -54456730 - AluSq/x SINE Alu -160 152 1 739 304 57 20 chr6 127960962 127961214 -54454028 + MIR SINE MIR 5 262 0 581 208 8 24 chr6 127962026 127962170 -54453072 + MLT1A2 LTR MaLR 229 356 -18 2560 161 7 5 chr6 127962170 127962593 -54452649 + MSTB LTR MaLR 1 424 -2 581 208 8 24 chr6 127962593 127962612 -54452630 + MLT1A2 LTR MaLR 356 374 0 539 313 193 21 chr6 127962808 127963290 -54451952 - L3 LINE CR1 -7 1570 1006 316 291 158 32 chr6 127963394 127963552 -54451690 + MIR3 SINE MIR 8 185 -23 402 274 117 100 chr6 127964167 127964460 -54450782 + MLT1J LTR MaLR 48 351 -160 2197 119 10 10 chr6 127964460 127964772 -54450470 + AluSx SINE Alu 1 312 0 402 274 117 100 chr6 127964772 127964879 -54450363 + MLT1J LTR MaLR 351 455 -56 983 178 0 6 chr6 127964996 127965159 -54450083 - FRAM SINE Alu -14 162 1 1436 187 65 4 chr6 127966488 127966766 -54448476 + AluJo SINE Alu 1 295 -17 193 239 14 14 chr6 127966769 127966840 -54448402 + GA-rich Low_complexity Low_complexity 4 74 0 1259 160 22 0 chr6 127967646 127967877 -54447365 - L1MB7 LINE L1 -23 6161 5926 1988 129 24 12 chr6 127967882 127968216 -54447026 - MER47A DNA MER2_type -1 365 28 1674 161 16 3 chr6 127968222 127968532 -54446710 - L1MB7 LINE L1 -258 5926 5613 36 0 0 0 chr6 127968532 127968568 -54446674 + AT_rich Low_complexity Low_complexity 1 36 0 2406 95 0 6 chr6 127969032 127969347 -54445895 + AluSp SINE Alu 1 313 0 233 305 106 58 chr6 127969580 127969806 -54445436 + L2 LINE L2 2686 2922 -392 783 240 70 62 chr6 127969818 127969840 -54445402 + MIR SINE MIR 13 33 -229 2201 108 3 0 chr6 127969840 127970135 -54445107 + AluSx SINE Alu 1 296 -16 783 240 70 62 chr6 127970135 127970288 -54444954 + MIR SINE MIR 33 193 -69 1887 133 7 31 chr6 127970288 127970581 -54444661 + AluJo SINE Alu 13 298 -14 783 240 70 62 chr6 127970581 127970646 -54444596 + MIR SINE MIR 193 256 -6 2150 130 0 0 chr6 127970648 127970941 -54444301 + AluSx SINE Alu 1 293 -19 707 185 8 8 chr6 127971401 127971520 -54443722 + FLAM_C SINE Alu 1 119 -14 225 0 0 0 chr6 127971796 127971821 -54443421 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2485 50 0 7 chr6 127971823 127972122 -54443120 - AluY SINE Alu -14 297 1 280 333 81 9 chr6 127972330 127972441 -54442801 - MIR SINE MIR -68 140 22 1765 161 81 9 chr6 127973756 127974078 -54441164 + MER7A DNA MER2_type 1 343 -3 2379 52 3 23 chr6 127974928 127975238 -54440004 + AluY SINE Alu 1 304 -7 27 96 0 0 chr6 127976193 127976276 -54438966 + GC_rich Low_complexity Low_complexity 1 83 0 200 143 24 0 chr6 127976881 127976923 -54438319 + (CGGAG)n Simple_repeat Simple_repeat 4 46 0 1727 239 70 13 chr6 127977025 127977639 -54437603 - L1M4 LINE L1 -1034 5112 4464 2475 103 8 0 chr6 127977664 127978031 -54437211 - THE1C LTR MaLR -5 370 1 1814 157 160 0 chr6 127978130 127978499 -54436743 - MSTB1 LTR MaLR 0 432 5 1167 172 0 41 chr6 127978530 127978661 -54436581 - AluJb SINE Alu -17 295 175 1615 123 153 96 chr6 127978661 127979066 -54436176 + MSTA LTR MaLR 1 428 0 1167 172 0 41 chr6 127979066 127979155 -54436087 - AluJb SINE Alu -137 175 84 1240 249 34 16 chr6 127979155 127979606 -54435636 - L1M4 LINE L1 -1818 4328 3850 1726 172 78 70 chr6 127979606 127979779 -54435463 + MLT1C LTR MaLR 4 174 -293 2313 90 0 13 chr6 127979779 127980079 -54435163 + AluSc SINE Alu 1 296 -13 1726 172 78 70 chr6 127980079 127980365 -54434877 + MLT1C LTR MaLR 174 467 0 1240 249 34 16 chr6 127980365 127980461 -54434781 - L1M4 LINE L1 -2296 3850 3757 2723 52 0 0 chr6 127980480 127980809 -54434433 - L1PA7 LINE L1 -11 6143 5815 20032 144 28 27 chr6 127981036 127983181 -54432061 + L1M1 LINE L1 19 2160 -5405 2215 97 0 0 chr6 127983181 127983480 -54431762 + AluSc SINE Alu 1 299 0 20032 144 28 27 chr6 127983480 127984354 -54430888 + L1M1 LINE L1 2160 3031 -4534 2011 134 3 22 chr6 127984354 127984668 -54430574 + AluSx SINE Alu 1 308 -4 20032 144 28 27 chr6 127984668 127984680 -54430562 + L1M1 LINE L1 3031 3041 -4524 2138 131 0 0 chr6 127984680 127984971 -54430271 + AluSx SINE Alu 20 310 -2 20032 144 28 27 chr6 127984971 127985792 -54429450 + L1M1 LINE L1 3041 3879 -3686 3264 199 23 9 chr6 127985767 127986564 -54428678 + L1M1 LINE L1 4086 4893 -2672 * 8764 196 48 45 chr6 127986543 127988044 -54427198 + L1MA3 LINE L1 1408 2902 -4119 2268 108 0 0 chr6 127988044 127988340 -54426902 + AluY SINE Alu 2 297 -14 8764 196 48 45 chr6 127988340 127989635 -54425607 + L1MA3 LINE L1 2902 4191 -2830 1924 173 0 3 chr6 127989635 127989947 -54425295 - AluJb SINE Alu -1 311 1 8764 196 48 45 chr6 127989947 127990026 -54425216 + L1MA3 LINE L1 4191 4268 -2753 2367 65 10 3 chr6 127990026 127990334 -54424908 + AluY SINE Alu 1 310 -1 8764 196 48 45 chr6 127990334 127992271 -54422971 + L1MA3 LINE L1 4268 6198 -823 2163 102 3 44 chr6 127992271 127992586 -54422656 + AluSq SINE Alu 1 302 -11 8764 196 48 45 chr6 127992586 127993063 -54422179 + L1MA3 LINE L1 6198 6672 -349 528 137 42 11 chr6 127993063 127993158 -54422084 + MER4A LTR ERV1 1 98 -566 1444 105 65 89 chr6 127993158 127993512 -54421730 + MER4A LTR ERV1 261 664 0 3015 163 14 14 chr6 127993528 127994160 -54421082 - L1 LINE L1 -1097 5049 4418 1049 202 22 0 chr6 127994459 127994687 -54420555 + L1ME2 LINE L1 5685 5917 -247 1958 77 62 0 chr6 127994687 127994960 -54420282 - L1PA11 LINE L1 0 6174 5885 317 245 174 0 chr6 127996388 127996486 -54418756 + L2 LINE L2 3199 3313 0 771 179 0 8 chr6 127996603 127996737 -54418505 + FLAM_A SINE Alu 1 133 0 3458 182 72 32 chr6 127997072 127997935 -54417307 - L1MB4 LINE L1 -6 6174 5242 1673 144 38 41 chr6 127997935 127998227 -54417015 - AluJo SINE Alu -19 293 3 3458 182 72 32 chr6 127998227 127998682 -54416560 - L1MB4 LINE L1 -938 5242 4806 1729 161 51 10 chr6 127998899 127999191 -54416051 + AluJb SINE Alu 8 311 -1 410 355 118 0 chr6 127999992 128000254 -54414988 + L2 LINE L2 1042 1334 -1980 209 238 159 16 chr6 128000268 128000394 -54414848 - MIR SINE MIR -43 219 76 269 280 183 0 chr6 128000394 128000487 -54414755 + L3 LINE CR1 1415 1524 -53 * 643 316 164 21 chr6 128000481 128001092 -54414150 + L2 LINE L2 1602 2299 -1015 25 0 0 0 chr6 128001486 128001511 -54413731 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr6 128002939 128002973 -54412269 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr6 128003035 128003062 -54412180 + AT_rich Low_complexity Low_complexity 1 27 0 323 225 14 0 chr6 128005128 128005199 -54410043 - L2 LINE L2 -2 3311 3240 204 40 0 0 chr6 128005472 128005497 -54409745 + (TA)n Simple_repeat Simple_repeat 1 25 0 727 203 0 0 chr6 128005754 128005887 -54409355 + FLAM_A SINE Alu 1 133 0 752 184 0 57 chr6 128006917 128007058 -54408184 - FLAM_C SINE Alu 0 133 1 21 0 0 0 chr6 128008368 128008389 -54406853 + AT_rich Low_complexity Low_complexity 1 21 0 1480 105 50 0 chr6 128009879 128010098 -54405144 + MER30 DNA MER1_type 1 230 0 2727 91 13 11 chr6 128010647 128011021 -54404221 + THE1C LTR MaLR 1 375 0 1802 75 51 0 chr6 128011369 128011624 -54403618 - L1PA7 LINE L1 0 6154 5887 396 192 119 111 chr6 128011651 128011692 -54403550 - MER113 DNA MER1_type? -127 394 355 212 0 36 0 chr6 128011692 128011720 -54403522 + (TA)n Simple_repeat Simple_repeat 1 29 0 2272 108 0 3 chr6 128011720 128012015 -54403227 - AluSx SINE Alu -18 294 1 396 192 119 111 chr6 128012015 128012358 -54402884 - MER113 DNA MER1_type? -165 356 6 213 234 0 21 chr6 128012427 128012474 -54402768 + GA-rich Low_complexity Low_complexity 5 50 0 865 233 24 10 chr6 128013901 128014107 -54401135 - MER3 DNA MER1_type 0 209 1 180 152 0 0 chr6 128014942 128014975 -54400267 + (TG)n Simple_repeat Simple_repeat 2 34 0 262 270 45 0 chr6 128017110 128017199 -54398043 - MIR3 SINE MIR -5 203 111 413 221 40 67 chr6 128017349 128017498 -54397744 + MLT1G LTR MaLR 446 590 0 269 231 0 15 chr6 128019010 128019075 -54396167 + MER20B DNA MER1_type 66 129 -654 247 298 61 53 chr6 128019309 128019423 -54395819 + L2 LINE L2 3153 3267 -5 2168 119 3 0 chr6 128019893 128020187 -54395055 - AluSx SINE Alu -17 295 1 202 373 91 9 chr6 128020957 128021067 -54394175 - L2 LINE L2 -7 3265 3147 26 0 0 0 chr6 128022200 128022226 -54393016 + AT_rich Low_complexity Low_complexity 1 26 0 1423 166 50 0 chr6 128022620 128022861 -54392381 + AluSx SINE Alu 52 304 -8 505 263 110 12 chr6 128023320 128023523 -54391719 - MIR SINE MIR -37 225 3 1768 170 3 17 chr6 128023567 128023861 -54391381 - AluJo SINE Alu -22 290 1 248 139 0 0 chr6 128023922 128023958 -54391284 + MIR SINE MIR 216 251 -11 321 151 35 70 chr6 128024272 128024358 -54390884 + L2 LINE L2 2171 2253 -1061 716 279 135 9 chr6 128024371 128024697 -54390545 + MLT1J2 LTR MaLR 15 381 -69 1954 168 17 15 chr6 128024971 128025375 -54389867 + L1MB2 LINE L1 5688 6092 -79 28708 97 17 24 chr6 128025383 128029653 -54385589 - L1PA7 LINE L1 -8 6461 2162 2053 113 10 7 chr6 128029653 128029955 -54385287 - AluY SINE Alu -8 303 1 371 89 0 0 chr6 128029955 128030011 -54385231 - AluSc SINE Alu -168 131 76 1510 97 24 0 chr6 128030011 128030217 -54385025 - AluY SINE Alu -100 211 1 28708 97 17 24 chr6 128030217 128031623 -54383619 - L1PA7 LINE L1 -4304 2165 763 675 169 15 0 chr6 128031705 128031835 -54383407 + MLT1A2 LTR MaLR 1 132 -242 245 159 71 0 chr6 128031851 128031909 -54383333 + MLT1J1 LTR MaLR 355 432 -18 1870 141 10 43 chr6 128032239 128032544 -54382698 - AluJo SINE Alu -17 295 1 228 303 61 30 chr6 128032999 128033098 -54382144 - MER5A DNA MER1_type 0 189 88 2291 91 0 0 chr6 128033332 128033629 -54381613 - AluSg SINE Alu -13 297 1 1761 161 4 0 chr6 128034039 128034312 -54380930 - AluJo SINE Alu -35 277 4 2067 106 40 0 chr6 128034843 128035139 -54380103 + AluSp SINE Alu 1 307 0 711 90 0 0 chr6 128035138 128035238 -54380004 + (TA)n Simple_repeat Simple_repeat 2 101 0 22 35 0 0 chr6 128036031 128036060 -54379182 + AT_rich Low_complexity Low_complexity 1 29 0 198 283 162 61 chr6 128036855 128036954 -54378288 - MIR SINE MIR -142 120 12 437 294 120 11 chr6 128037335 128037519 -54377723 - L3 LINE CR1 -156 1421 1218 1200 185 74 7 chr6 128038671 128038941 -54376301 + L1PA16 LINE L1 5879 6166 0 579 283 138 35 chr6 128039231 128039715 -54375527 + HAL1b LINE L1 276 809 -539 704 172 71 139 chr6 128039882 128040120 -54375122 + MER58A DNA MER1_type 2 223 -1 1958 138 10 3 chr6 128040138 128040429 -54374813 + AluSx SINE Alu 1 293 -19 369 315 100 16 chr6 128040494 128040745 -54374497 + L1MD1 LINE L1 2125 2396 -3750 262 311 86 33 chr6 128040772 128040928 -54374314 + L1MD1 LINE L1 2481 2627 -3519 207 0 0 0 chr6 128040928 128040951 -54374291 + (TG)n Simple_repeat Simple_repeat 2 24 0 262 311 86 33 chr6 128040951 128041280 -54373962 + L1MD1 LINE L1 2627 2992 -3154 * 505 247 97 95 chr6 128041271 128041651 -54373591 + L1MC4a LINE L1 5881 6261 -1547 1581 169 35 11 chr6 128042333 128042617 -54372625 - AluJo SINE Alu -21 291 1 1881 160 48 0 chr6 128043435 128043766 -54371476 - MER7A DNA MER2_type 0 346 2 408 231 39 0 chr6 128044099 128044203 -54371039 + MER5C DNA MER1_type 52 159 -165 22 0 0 0 chr6 128044210 128044232 -54371010 + AT_rich Low_complexity Low_complexity 1 22 0 1323 201 25 44 chr6 128044280 128044644 -54370598 - L1ME1 LINE L1 -147 6019 5663 * 2741 204 96 77 chr6 128044638 128045016 -54370226 - L1ME1 LINE L1 -1206 4940 4571 1639 170 31 21 chr6 128045016 128045304 -54369938 + AluJo SINE Alu 1 291 -21 2741 204 96 77 chr6 128045304 128045843 -54369399 - L1ME1 LINE L1 -1575 4571 3993 2102 121 3 7 chr6 128045843 128046149 -54369093 - AluSx SINE Alu -7 305 1 2741 204 96 77 chr6 128046149 128046405 -54368837 - L1ME1 LINE L1 -2153 3993 3743 379 237 61 8 chr6 128046405 128046536 -54368706 + MER5C DNA MER1_type 186 323 -1 346 333 78 31 chr6 128046822 128046951 -54368291 + L2 LINE L2 3137 3271 -1 1863 171 3 10 chr6 128048093 128048391 -54366851 + AluJb SINE Alu 1 296 -16 481 302 49 20 chr6 128048842 128049087 -54366155 + MIR SINE MIR 2 253 -9 2899 257 66 41 chr6 128049093 128050829 -54364413 + L1MD1 LINE L1 3223 5060 -1086 21 36 0 0 chr6 128051470 128051498 -54363744 + AT_rich Low_complexity Low_complexity 1 28 0 2549 44 0 0 chr6 128051554 128051850 -54363392 + AluY SINE Alu 1 296 -15 841 194 47 0 chr6 128052712 128052882 -54362360 + MER58A DNA MER1_type 47 224 0 278 157 0 0 chr6 128053470 128053521 -54361721 + Alu SINE Alu 243 293 -9 23 92 0 0 chr6 128053827 128053892 -54361350 + AT_rich Low_complexity Low_complexity 1 65 0 2151 133 0 3 chr6 128054131 128054431 -54360811 + AluSx SINE Alu 1 299 -13 3236 175 58 49 chr6 128054549 128055055 -54360187 + L1MD1 LINE L1 5384 5901 -341 1707 167 7 4 chr6 128055055 128055330 -54359912 + AluJb SINE Alu 5 280 -32 3236 175 58 49 chr6 128055330 128055673 -54359569 + L1MD1 LINE L1 5901 6240 -2 2088 126 3 0 chr6 128055706 128056014 -54359228 - AluSp SINE Alu 0 309 1 1924 151 10 26 chr6 128057512 128057817 -54357425 + AluJo SINE Alu 1 300 -12 191 242 0 0 chr6 128058522 128058555 -54356687 + MIR SINE MIR 48 80 -182 266 257 0 40 chr6 128058577 128058651 -54356591 + MIR SINE MIR 192 262 0 2458 65 0 16 chr6 128060146 128060453 -54354789 - AluY SINE Alu -9 302 1 32 57 0 0 chr6 128060569 128060622 -54354620 + AT_rich Low_complexity Low_complexity 1 53 0 2202 79 4 0 chr6 128060993 128061317 -54353925 - AluSc SINE Alu 0 325 1 1802 120 3 81 chr6 128061785 128062093 -54353149 + AluSx SINE Alu 11 294 -18 30 59 0 0 chr6 128062202 128062253 -54352989 + AT_rich Low_complexity Low_complexity 1 51 0 2068 117 13 28 chr6 128062337 128062654 -54352588 - AluSx SINE Alu 0 312 1 326 295 164 63 chr6 128062716 128062943 -54352299 - L2 LINE L2 -337 2977 2774 2560 64 0 6 chr6 128062943 128063255 -54351987 - AluY SINE Alu -1 310 1 326 295 164 63 chr6 128063255 128063485 -54351757 - L2 LINE L2 -540 2774 2474 255 91 45 0 chr6 128063485 128063529 -54351713 - L2 LINE L2 -1091 2223 2178 1503 184 9 22 chr6 128063544 128063840 -54351402 + MLT1A1 LTR MaLR 20 287 -87 1585 185 21 17 chr6 128063840 128064127 -54351115 + AluJo SINE Alu 1 288 -24 1503 184 9 22 chr6 128064127 128064202 -54351040 + MLT1A1 LTR MaLR 287 361 -13 331 308 111 34 chr6 128064689 128064806 -54350436 + L2 LINE L2 3147 3272 0 388 290 217 22 chr6 128064986 128065258 -54349984 + L2 LINE L2 2652 2976 -338 212 311 184 10 chr6 128065359 128065462 -54349780 + L2 LINE L2 3193 3313 0 225 0 0 0 chr6 128065522 128065547 -54349695 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2228 82 0 7 chr6 128065596 128065929 -54349313 + AluSc SINE Alu 1 331 0 2050 144 3 7 chr6 128066327 128066626 -54348616 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr6 128066962 128066983 -54348259 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 128067317 128067351 -54347891 + AT_rich Low_complexity Low_complexity 1 34 0 1592 153 0 38 chr6 128067914 128068176 -54347066 - AluSx SINE Alu -20 292 41 969 139 7 20 chr6 128068976 128069127 -54346115 + AluSq/x SINE Alu 1 149 -163 315 197 0 14 chr6 128069127 128069198 -54346044 + AluS SINE Alu 226 295 -5 2025 134 7 26 chr6 128069271 128069576 -54345666 + AluSx SINE Alu 5 303 -9 339 233 0 12 chr6 128069647 128069733 -54345509 - Charlie5 DNA MER1_type -27 2585 2501 1199 296 87 15 chr6 128070210 128071001 -54344241 - L2 LINE L2 -1 3312 2456 193 305 110 49 chr6 128071319 128071401 -54343841 + L2 LINE L2 3185 3271 -1 756 265 45 0 chr6 128071538 128071738 -54343504 + MER63A DNA MER1_type 1 209 -1 539 285 132 44 chr6 128077352 128077580 -54337662 - MIR SINE MIR 0 262 15 1097 185 57 96 chr6 128077800 128078206 -54337036 + MLT1B LTR MaLR 1 390 0 2278 88 7 0 chr6 128079519 128079814 -54335428 + AluSx SINE Alu 1 297 -15 563 277 16 21 chr6 128080305 128080493 -54334749 + MLT1K LTR MaLR 379 565 -23 680 224 142 32 chr6 128080859 128081078 -54334164 + MIR SINE MIR 16 258 -4 2429 103 11 27 chr6 128081106 128081475 -54333767 + THE1B LTR MaLR 1 363 -1 349 314 57 9 chr6 128081629 128081734 -54333508 + L2 LINE L2 3163 3272 0 500 307 44 18 chr6 128082062 128082336 -54332906 - L1ME LINE L1 -437 5684 5404 326 357 101 52 chr6 128083737 128084124 -54331118 - L2 LINE L2 -12 3260 2855 2035 163 69 108 chr6 128084138 128084721 -54330521 - MER68 LTR ERV1 0 562 3 247 310 232 0 chr6 128085910 128086065 -54329177 + MIR SINE MIR 47 237 -25 283 317 170 9 chr6 128086071 128086295 -54328947 - MIR SINE MIR -2 260 1 2286 118 0 16 chr6 128086631 128086946 -54328296 + AluSx SINE Alu 1 310 -2 4208 129 16 126 chr6 128086997 128088544 -54326698 + pTR5 LTR ERV1 743 2606 0 2538 58 0 0 chr6 128089070 128089365 -54325877 + AluY SINE Alu 1 295 -16 2029 209 24 5 chr6 128089561 128089973 -54325269 + MSTB LTR MaLR 7 426 0 207 69 0 0 chr6 128090070 128090099 -54325143 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 199 262 0 0 chr6 128090099 128090141 -54325101 - L2 LINE L2 -215 3057 3016 188 100 33 0 chr6 128090154 128090184 -54325058 - MIR SINE MIR -70 192 162 894 344 171 13 chr6 128090331 128091313 -54323929 - L2 LINE L2 -428 2886 1750 879 172 21 0 chr6 128092566 128092711 -54322531 + FAM SINE Alu 20 167 -18 834 144 83 44 chr6 128092882 128093063 -54322179 + MER5A DNA MER1_type 1 188 -1 896 174 52 0 chr6 128093384 128093539 -54321703 + AluJo SINE Alu 126 288 -24 846 176 0 0 chr6 128093552 128093688 -54321554 + AluJo SINE Alu 6 141 -171 561 162 0 45 chr6 128094084 128094195 -54321047 - FLAM_C SINE Alu -37 106 1 180 0 0 0 chr6 128094324 128094344 -54320898 + (A)n Simple_repeat Simple_repeat 1 20 0 4762 110 15 80 chr6 128096970 128097897 -54317345 + MER4D LTR ERV1 6 872 0 448 195 0 0 chr6 128097900 128097977 -54317265 + MER21B LTR ERV1 12 88 -775 3350 191 42 58 chr6 128097990 128098786 -54316456 + LTR39 LTR ERV1 1 783 0 2570 229 104 19 chr6 128098787 128099520 -54315722 + MER21B LTR ERV1 49 843 -20 22 0 0 0 chr6 128100205 128100227 -54315015 + AT_rich Low_complexity Low_complexity 1 22 0 762 228 6 36 chr6 128100261 128100428 -54314814 + MER58A DNA MER1_type 1 162 0 1536 223 11 19 chr6 128101711 128102084 -54313158 + MLT1A2 LTR MaLR 1 370 -4 286 257 35 26 chr6 128102281 128102394 -54312848 + L1ME LINE L1 5756 5869 -252 2188 139 7 0 chr6 128102490 128102799 -54312443 + AluSx SINE Alu 1 311 -1 644 186 23 17 chr6 128102972 128103205 -54312037 + GA-rich Low_complexity Low_complexity 1 234 0 29 70 0 0 chr6 128103548 128103605 -54311637 + AT_rich Low_complexity Low_complexity 1 57 0 2329 105 0 3 chr6 128103884 128104189 -54311053 + AluSg SINE Alu 1 304 -6 2261 110 3 0 chr6 128104216 128104515 -54310727 + AluSx SINE Alu 9 308 -4 207 0 0 0 chr6 128104515 128104538 -54310704 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 252 0 0 0 chr6 128104537 128104565 -54310677 + (GA)n Simple_repeat Simple_repeat 2 29 0 438 219 105 103 chr6 128104762 128105151 -54310091 - L1MC4 LINE L1 -124 7918 7529 4569 140 79 26 chr6 128105665 128106522 -54308720 + MER4D LTR ERV1 1 903 0 331 165 66 55 chr6 128107685 128107776 -54307466 + MER104 DNA Tc2 13 104 -76 756 163 7 30 chr6 128107820 128107955 -54307287 - FLAM_A SINE Alu -1 132 1 24 32 0 0 chr6 128108104 128108135 -54307107 + AT_rich Low_complexity Low_complexity 1 31 0 3254 127 33 23 chr6 128108764 128109392 -54305850 + MER41A LTR ERV1 1 635 0 3569 165 57 4 chr6 128109433 128110200 -54305042 + L1MC1 LINE L1 5195 6007 -337 1364 200 184 58 chr6 128110220 128110861 -54304381 + MER50 LTR ERV1 13 734 0 1767 185 34 6 chr6 128110863 128111219 -54304023 + MER50-int LTR ERV1 4 369 -6836 1549 186 80 35 chr6 128111208 128111695 -54303547 + MER50-int LTR ERV1 655 1243 -5962 * 1549 195 57 61 chr6 128111677 128111848 -54303394 + MER50-int LTR ERV1 1260 1430 -3787 6024 62 29 0 chr6 128111848 128112606 -54302636 + LTR17 LTR ERV1 1 780 0 1549 195 57 61 chr6 128112606 128112988 -54302254 + MER50-int LTR ERV1 1430 4781 -436 770 176 0 67 chr6 128112996 128113161 -54302081 + MER50 LTR ERV1 581 734 0 1590 146 30 67 chr6 128113162 128113490 -54301752 + L1MC1 LINE L1 6013 6328 -5 900 223 91 35 chr6 128113658 128114085 -54301157 + L1MCc LINE L1 18 468 -5955 270 182 0 0 chr6 128114295 128114350 -54300892 + L1 LINE L1 2936 2990 -3156 463 198 89 0 chr6 128114350 128114451 -54300791 + MER58A DNA MER1_type 37 146 0 685 223 39 9 chr6 128114456 128114689 -54300553 + L1 LINE L1 3021 3260 -2886 * 751 196 56 28 chr6 128114675 128114889 -54300353 + L1 LINE L1 4080 4299 -1847 1313 217 0 27 chr6 128114909 128115167 -54300075 + AluJo SINE Alu 47 297 -15 230 149 14 40 chr6 128116537 128116611 -54298631 - L1ME4a LINE L1 -8 6113 6042 1855 122 0 4 chr6 128116789 128117044 -54298198 - AluSx SINE Alu -15 297 44 3696 101 4 4 chr6 128117410 128118085 -54297157 + L1MA1 LINE L1 5110 5785 -517 6149 161 3 3 chr6 128118092 128119224 -54296018 + L1PA14 LINE L1 3289 4421 -1725 750 94 24 16 chr6 128119235 128119362 -54295880 + L1MA1 LINE L1 5902 6029 -273 5868 94 21 25 chr6 128119369 128119729 -54295513 + L1PA14 LINE L1 4439 4799 -1362 2223 95 0 0 chr6 128119729 128120045 -54295197 + AluSq SINE Alu 2 317 0 5868 94 21 25 chr6 128120045 128121087 -54294155 + L1PA14 LINE L1 4799 5828 -333 2759 10 3 0 chr6 128121087 128121390 -54293852 + AluYb8 SINE Alu 1 304 -14 5868 94 21 25 chr6 128121390 128121722 -54293520 + L1PA14 LINE L1 5828 6160 -1 3329 99 43 2 chr6 128121722 128122225 -54293017 + L1MA1 LINE L1 5769 6295 -7 865 291 46 48 chr6 128122851 128123263 -54291979 + L2 LINE L2 2449 2859 -455 325 323 39 8 chr6 128123469 128123596 -54291646 - L2 LINE L2 -526 2788 2658 1955 158 52 3 chr6 128124840 128125188 -54290054 - MLT1A1 LTR MaLR 0 365 1 4181 140 28 17 chr6 128125431 128126212 -54289030 - L1MB7 LINE L1 0 6184 5395 199 256 33 44 chr6 128126863 128126953 -54288289 - L2 LINE L2 -923 2391 2303 739 70 211 0 chr6 128127547 128127661 -54287581 + MER85 DNA T2_type 1 138 -1 1395 204 16 29 chr6 128128019 128128327 -54286915 + AluJb SINE Alu 1 304 -8 524 163 22 11 chr6 128128442 128128534 -54286708 + HY4 scRNA scRNA 1 93 0 1070 221 90 85 chr6 128128624 128128738 -54286504 + MLT1G LTR MaLR 1 113 -477 2170 107 0 58 chr6 128128738 128129065 -54286177 - AluSx SINE Alu -4 308 1 1070 221 90 85 chr6 128129065 128129509 -54285733 + MLT1G LTR MaLR 113 533 -57 210 22 111 22 chr6 128129513 128129558 -54285684 + T-rich Low_complexity Low_complexity 2 50 0 1521 164 72 8 chr6 128129580 128129842 -54285400 - AluJb SINE Alu -33 279 1 2559 126 69 12 chr6 128131150 128131555 -54283687 + MSTA LTR MaLR 1 428 0 352 353 20 27 chr6 128131758 128131908 -54283334 - L2 LINE L2 -2808 506 358 1420 152 0 94 chr6 128131910 128132187 -54283055 - AluJo SINE Alu -8 304 54 535 115 25 0 chr6 128132327 128132478 -54282764 + L1MA5A LINE L1 5982 6296 -1 303 204 0 0 chr6 128132490 128132539 -54282703 + AluJ/monomer SINE Alu 1 49 -250 297 333 80 13 chr6 128132678 128132850 -54282392 + MIR SINE MIR 42 230 -32 1925 148 17 3 chr6 128132946 128133243 -54281999 + AluJb SINE Alu 3 303 -9 333 244 187 8 chr6 128134110 128134233 -54281009 + MIR SINE MIR 45 189 -73 221 327 137 40 chr6 128134379 128134883 -54280359 + L2 LINE L2 572 1124 -2190 1576 212 0 23 chr6 128134981 128135288 -54279954 + AluJo SINE Alu 1 300 -12 378 259 163 18 chr6 128135438 128135604 -54279638 + L2 LINE L2 2199 2388 -926 633 309 11 21 chr6 128135605 128135793 -54279449 + MLT1F1 LTR MaLR 1 186 -356 1085 232 49 8 chr6 128135839 128136085 -54279157 + MLT1F1 LTR MaLR 311 566 -1 201 302 21 42 chr6 128136333 128136429 -54278813 + L2 LINE L2 2555 2648 -666 927 173 124 19 chr6 128136730 128137083 -54278159 - MLT1D LTR MaLR -16 489 9 27 29 0 0 chr6 128137572 128137606 -54277636 + AT_rich Low_complexity Low_complexity 1 34 0 395 212 0 12 chr6 128137984 128138069 -54277173 - MER82 DNA MER2_type 0 653 570 1163 135 21 5 chr6 128138073 128138265 -54276977 - MER82 DNA MER2_type -376 277 83 860 209 0 6 chr6 128138380 128138565 -54276677 + FRAM SINE Alu 1 177 0 2434 80 3 7 chr6 128138610 128138911 -54276331 - AluSx SINE Alu -12 300 1 430 312 28 0 chr6 128139007 128139148 -54276094 - MIR SINE MIR -65 197 53 542 150 0 0 chr6 128139614 128139694 -54275548 - MADE1 DNA Mariner 0 80 1 21 36 0 0 chr6 128139712 128139740 -54275502 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr6 128140427 128140471 -54274771 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 128141172 128141193 -54274049 + AT_rich Low_complexity Low_complexity 1 21 0 2127 123 17 3 chr6 128142423 128142724 -54272518 - AluSx SINE Alu -7 305 1 240 333 53 0 chr6 128145424 128145499 -54269743 + L2 LINE L2 3169 3247 -25 585 235 67 7 chr6 128145969 128146118 -54269124 - MIR SINE MIR -87 175 18 846 180 15 65 chr6 128146616 128146816 -54268426 + MER20 DNA MER1_type 27 216 -3 300 231 93 157 chr6 128149031 128149495 -54265747 - L1M2 LINE L1 -5877 972 539 22 35 0 0 chr6 128151081 128151110 -54264132 + AT_rich Low_complexity Low_complexity 1 29 0 1462 158 9 0 chr6 128151128 128151356 -54263886 - MER46A DNA MER2_type 0 236 7 1789 150 67 6 chr6 128151372 128151685 -54263557 - MSTA LTR MaLR 0 428 97 649 147 60 87 chr6 128151683 128151866 -54263376 - THE1C LTR MaLR -104 271 94 3298 149 70 2 chr6 128151866 128152410 -54262832 - LTR1 LTR ERV1 0 785 205 1406 165 17 27 chr6 128152427 128152713 -54262529 - LTR1 LTR ERV1 -527 258 32 582 133 0 11 chr6 128152774 128152864 -54262378 - MSTA LTR MaLR -339 89 1 10976 123 13 31 chr6 128152864 128154471 -54260771 - THE1C-int LTR MaLR 0 1580 3 2098 119 56 63 chr6 128154473 128154851 -54260391 - THE1C LTR MaLR 0 375 1 8085 175 46 0 chr6 128154855 128156234 -54259008 - MSTA-int LTR MaLR -209 1442 1 2720 127 43 14 chr6 128156234 128156650 -54258592 - MSTA LTR MaLR 0 428 1 704 357 65 35 chr6 128156781 128157518 -54257724 - L2 LINE L2 -5 3267 2511 323 185 138 0 chr6 128157635 128157700 -54257542 + MER69 DNA AcHobo 2451 2524 -2 5078 155 34 27 chr6 128157764 128158837 -54256405 + L1MB3 LINE L1 5103 6183 0 187 179 26 0 chr6 128159178 128159217 -54256025 + MIR3 SINE MIR 146 185 -23 291 246 0 0 chr6 128159524 128159585 -54255657 + MIR3 SINE MIR 125 185 -23 28 29 0 0 chr6 128159601 128159636 -54255606 + AT_rich Low_complexity Low_complexity 1 35 0 921 183 122 30 chr6 128159665 128159722 -54255520 - AluJo SINE Alu -97 215 165 1561 133 56 26 chr6 128159722 128160026 -54255216 - AluSx SINE Alu 0 312 29 921 183 122 30 chr6 128160026 128160165 -54255077 - AluJo SINE Alu -147 165 1 490 320 117 40 chr6 128160686 128161011 -54254231 - LTR16C LTR ERVL -57 434 85 1252 361 32 64 chr6 128161238 128162688 -54252554 - HERV16 LTR ERVL -395 5369 3966 1718 183 4 0 chr6 128162720 128162999 -54252243 - AluJb SINE Alu -32 280 1 727 104 26 26 chr6 128163004 128163119 -54252123 - L1MA5 LINE L1 -2 6298 6184 673 305 52 35 chr6 128163128 128163611 -54251631 - HERV16 LTR ERVL -2998 1998 1521 328 281 199 0 chr6 128163851 128163997 -54251245 - HERV16 LTR ERVL -3873 1123 949 524 173 18 0 chr6 128164519 128164629 -54250613 + CT-rich Low_complexity Low_complexity 3 114 0 917 178 92 0 chr6 128164646 128164798 -54250444 - FRAM SINE Alu 0 166 1 299 373 101 0 chr6 128165038 128165196 -54250046 - HERV16 LTR ERVL -4820 176 3 689 303 77 39 chr6 128165197 128165534 -54249708 - LTR16C LTR ERVL 0 491 142 1749 183 16 3 chr6 128166113 128166419 -54248823 - AluJo SINE Alu 0 312 3 2926 13 0 0 chr6 128166917 128167234 -54248008 + AluYb8 SINE Alu 1 317 -1 433 189 0 14 chr6 128167999 128168073 -54247169 - LTR16C LTR ERVL 0 491 419 366 115 0 33 chr6 128168099 128168160 -54247082 + MER21A LTR ERV1 13 71 -860 713 127 4 206 chr6 128168259 128168489 -54246753 + MER39 LTR ERV1 72 341 -366 3481 154 18 12 chr6 128168489 128168575 -54246667 - LTR39 LTR ERV1 0 783 699 2389 115 45 25 chr6 128168575 128168932 -54246310 + THE1B LTR MaLR 1 364 0 3481 154 18 12 chr6 128168932 128169410 -54245832 - LTR39 LTR ERV1 -84 699 216 1858 111 4 4 chr6 128169423 128169705 -54245537 + AluSq SINE Alu 34 315 0 581 126 110 31 chr6 128169711 128169838 -54245404 + MER21A LTR ERV1 459 595 -336 * 1440 130 14 5 chr6 128169837 128170060 -54245182 - LTR39 LTR ERV1 -558 225 1 2730 182 60 74 chr6 128170061 128170709 -54244533 + MER21A LTR ERV1 210 848 -83 640 270 33 91 chr6 128170754 128171028 -54244214 - LTR16C LTR ERVL -68 423 166 2131 115 6 19 chr6 128171237 128171549 -54243693 + AluSx SINE Alu 1 308 -4 2322 82 0 20 chr6 128171628 128171934 -54243308 - AluSp SINE Alu -13 300 1 300 254 65 36 chr6 128171939 128172077 -54243165 - MIR SINE MIR -52 210 69 2369 107 0 0 chr6 128172336 128172645 -54242597 + AluSx SINE Alu 1 309 -3 2177 111 16 7 chr6 128173068 128173375 -54241867 + AluSx SINE Alu 1 310 -2 471 243 97 38 chr6 128173481 128173666 -54241576 + MLT1L LTR MaLR 15 210 -405 708 284 67 43 chr6 128173721 128174003 -54241239 + MLT1L LTR MaLR 327 615 0 2353 92 0 3 chr6 128174208 128174512 -54240730 + AluSc SINE Alu 1 303 -6 1657 143 110 0 chr6 128174596 128174869 -54240373 - AluJb SINE Alu -9 303 1 215 306 125 0 chr6 128174967 128175039 -54240203 + L2 LINE L2 3152 3232 -40 24 53 0 0 chr6 128175230 128175268 -54239974 + AT_rich Low_complexity Low_complexity 1 38 0 3042 167 116 15 chr6 128175268 128175807 -54239435 + L1MC3 LINE L1 7125 7731 -54 2319 120 125 10 chr6 128175807 128176191 -54239051 + MSTA LTR MaLR 1 428 0 3042 167 116 15 chr6 128176191 128176245 -54238997 + L1MC3 LINE L1 7731 7778 -7 2287 67 0 3 chr6 128176674 128176984 -54238258 + AluY SINE Alu 2 310 0 389 296 41 59 chr6 128177195 128177364 -54237878 + MIR SINE MIR 51 216 -46 2196 107 0 49 chr6 128178042 128178370 -54236872 + AluSx SINE Alu 1 312 0 338 270 57 8 chr6 128178576 128178686 -54236556 + MER5A DNA MER1_type 61 188 -1 221 0 35 0 chr6 128178691 128178720 -54236522 + (TG)n Simple_repeat Simple_repeat 2 31 0 231 146 83 0 chr6 128178861 128178909 -54236333 + L1PA15-16 LINE L1 500 551 -6298 225 83 0 0 chr6 128180029 128180065 -54235177 + (TC)n Simple_repeat Simple_repeat 1 36 0 240 216 78 147 chr6 128180626 128180844 -54234398 - MLT1L LTR MaLR -54 561 359 402 275 28 39 chr6 128180960 128181142 -54234100 - MLT1J LTR MaLR -331 180 1 2523 170 31 2 chr6 128181624 128182077 -54233165 + L1MB3 LINE L1 5682 6147 -36 2368 87 13 0 chr6 128182681 128182990 -54232252 - AluSp SINE Alu 0 313 1 252 191 21 0 chr6 128183648 128183695 -54231547 + LTR16B LTR ERVL 133 180 -284 240 266 164 74 chr6 128183866 128184086 -54231156 + L2 LINE L2 323 522 -2792 1951 112 52 42 chr6 128184086 128184181 -54231061 + MER44D DNA MER2_type 5 98 -2393 285 29 0 0 chr6 128184181 128184215 -54231027 + (GA)n Simple_repeat Simple_repeat 1 34 0 1951 112 52 42 chr6 128184215 128184239 -54231003 + MER44D DNA MER2_type 98 120 -2371 1892 117 11 8 chr6 128184239 128184523 -54230719 + AluSx SINE Alu 19 303 0 1951 112 52 42 chr6 128184523 128184731 -54230511 + MER44D DNA MER2_type 120 607 -2 240 266 164 74 chr6 128184731 128184754 -54230488 + L2 LINE L2 522 588 -2726 514 130 0 0 chr6 128184800 128184877 -54230365 + MER53 DNA DNA 3 79 -110 1723 169 0 49 chr6 128185093 128185419 -54229823 - AluJb SINE Alu -1 311 2 910 124 0 0 chr6 128185433 128185554 -54229688 - FRAM SINE Alu -28 148 28 544 110 0 0 chr6 128185554 128185636 -54229606 - L1M LINE L1 -786 5394 5313 22 0 0 0 chr6 128185825 128185847 -54229395 + AT_rich Low_complexity Low_complexity 1 22 0 1382 147 41 176 chr6 128185899 128185972 -54229270 - LTR52 LTR ERVL -3 418 337 787 149 0 15 chr6 128185972 128186106 -54229136 + FLAM_C SINE Alu 1 132 -1 1382 147 41 176 chr6 128186106 128186243 -54228999 - LTR52 LTR ERVL -84 337 183 2184 100 0 21 chr6 128186243 128186533 -54228709 + AluSx SINE Alu 1 284 -28 420 20 0 0 chr6 128186533 128186582 -54228660 + (CA)n Simple_repeat Simple_repeat 2 50 0 1382 147 41 176 chr6 128186582 128186785 -54228457 - LTR52 LTR ERVL -237 184 74 1545 197 28 0 chr6 128186785 128187074 -54228168 + L1PA16 LINE L1 5861 6157 -9 1382 147 41 176 chr6 128187074 128187140 -54228102 - LTR52 LTR ERVL -347 74 1 191 366 0 0 chr6 128187315 128187408 -54227834 - L2 LINE L2 -285 2987 2895 313 269 131 0 chr6 128188196 128188326 -54226916 - MIR SINE MIR -66 196 50 447 234 125 27 chr6 128188778 128188962 -54226280 + MIR SINE MIR 61 262 0 7636 97 7 19 chr6 128189013 128190097 -54225145 + MER11C LTR ERVK 1 1071 0 1480 168 27 70 chr6 128190251 128190549 -54224693 + AluJb SINE Alu 1 285 -27 3690 176 35 14 chr6 128190556 128191279 -54223963 - L1MB7 LINE L1 -7 6177 5440 1151 196 151 15 chr6 128191363 128191672 -54223570 - AluJo SINE Alu 0 345 1 1977 152 0 17 chr6 128191697 128191999 -54223243 - AluJb SINE Alu -15 297 1 737 169 52 0 chr6 128192495 128192631 -54222611 - FLAM_C SINE Alu 0 143 1 2886 184 31 90 chr6 128192897 128193206 -54222036 - MER72 LTR ERV1 0 722 396 2014 154 0 10 chr6 128193206 128193517 -54221725 + AluJb SINE Alu 5 312 0 2886 184 31 90 chr6 128193517 128193665 -54221577 - MER72 LTR ERV1 -326 396 241 2059 128 0 25 chr6 128193665 128193984 -54221258 + AluSx SINE Alu 1 311 -1 2886 184 31 90 chr6 128193984 128194288 -54220954 - MER72 LTR ERV1 -481 241 5 23 33 0 0 chr6 128194635 128194665 -54220577 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr6 128195037 128195079 -54220163 + AT_rich Low_complexity Low_complexity 1 42 0 1847 127 15 0 chr6 128195837 128196104 -54219138 - AluSg SINE Alu -10 300 30 2286 215 37 9 chr6 128196476 128196931 -54218311 - MLT1E3 LTR MaLR -2 622 155 2422 186 87 83 chr6 128197011 128197784 -54217458 - LTR1B LTR ERV1 -50 776 1 1015 131 6 19 chr6 128197785 128197945 -54217297 - MLT1E3 LTR MaLR -466 158 1 226 304 0 0 chr6 128198118 128198174 -54217068 + MIR SINE MIR 66 121 -87 288 70 0 0 chr6 128198376 128198419 -54216823 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 274 235 0 0 chr6 128198419 128198470 -54216772 - L2 LINE L2 -13 3259 3209 1688 85 4 37 chr6 128198483 128198729 -54216513 + MER4D LTR ERV1 1 238 -634 1209 279 65 25 chr6 128198729 128199255 -54215987 - LTR38 LTR ERV1 -9 547 1 * 3873 98 28 49 chr6 128199255 128199842 -54215400 + MER4D LTR ERV1 219 792 -80 385 100 110 120 chr6 128200326 128200426 -54214816 - L1MC1 LINE L1 -4 6329 6231 228 186 0 0 chr6 128200427 128200470 -54214772 + MER5A DNA MER1_type 99 141 -48 2206 119 3 6 chr6 128201409 128201721 -54213521 - AluSx SINE Alu -1 311 1 26 30 0 0 chr6 128201857 128201890 -54213352 + AT_rich Low_complexity Low_complexity 1 33 0 1585 176 33 20 chr6 128202044 128202345 -54212897 - AluJb SINE Alu -7 305 1 22 0 0 0 chr6 128203857 128203879 -54211363 + AT_rich Low_complexity Low_complexity 1 22 0 1590 251 56 8 chr6 128203898 128204276 -54210966 - LTR16A LTR ERVL 0 450 55 677 149 0 204 chr6 128204342 128204543 -54210699 - AluJo SINE Alu -151 161 2 453 244 90 16 chr6 128204551 128204898 -54210344 + L1ME3A LINE L1 5087 5450 -712 1684 175 0 7 chr6 128204972 128205246 -54209996 + AluJo SINE Alu 41 312 0 807 253 100 74 chr6 128205424 128205962 -54209280 + L1ME3A LINE L1 5503 6054 -116 29 28 0 0 chr6 128206409 128206445 -54208797 + AT_rich Low_complexity Low_complexity 1 36 0 2968 6 0 0 chr6 128206559 128206873 -54208369 + AluYb8 SINE Alu 1 314 -4 242 268 0 49 chr6 128207437 128207519 -54207723 - MLT1K LTR MaLR -494 94 17 884 207 16 36 chr6 128207630 128207823 -54207419 - MLT1B LTR MaLR -6 384 196 264 100 0 0 chr6 128207823 128207863 -54207379 + (TG)n Simple_repeat Simple_repeat 1 40 0 214 104 21 21 chr6 128207869 128207917 -54207325 + (GA)n Simple_repeat Simple_repeat 2 49 0 422 170 38 19 chr6 128207922 128208028 -54207214 - MLT1A2 LTR MaLR -215 175 68 648 188 27 0 chr6 128208032 128208144 -54207098 - MLT1A2 LTR MaLR -259 115 1 262 273 61 20 chr6 128208498 128208597 -54206645 + MIR3 SINE MIR 3 105 -103 2053 189 50 38 chr6 128208850 128209156 -54206086 - MLT1D LTR MaLR -2 503 186 2220 84 7 3 chr6 128209156 128209488 -54205754 - AluSp SINE Alu 0 333 1 2053 189 50 38 chr6 128209488 128209655 -54205587 - MLT1D LTR MaLR -319 186 23 2118 102 29 0 chr6 128212038 128212339 -54202903 - AluSx SINE Alu 0 309 1 262 309 49 43 chr6 128213241 128213278 -54201964 - MIR SINE MIR -68 194 159 1795 206 25 36 chr6 128213278 128213749 -54201493 + MLT1C LTR MaLR 1 466 -1 262 309 49 43 chr6 128213749 128213873 -54201369 - MIR SINE MIR -103 159 32 1852 162 12 9 chr6 128214004 128214331 -54200911 + L1MB2 LINE L1 5624 5951 -232 801 160 19 0 chr6 128214347 128214503 -54200739 + L1MB2 LINE L1 6013 6171 0 2435 54 0 24 chr6 128214623 128214920 -54200322 + AluY SINE Alu 16 305 -6 934 245 148 41 chr6 128215549 128216014 -54199228 + LTR33 LTR ERVL 1 515 -6 525 261 163 0 chr6 128216340 128216555 -54198687 - MIR SINE MIR -2 260 11 654 219 114 9 chr6 128216637 128216847 -54198395 - MER113 DNA MER1_type? -289 232 1 396 0 0 0 chr6 128216960 128217004 -54198238 + (TG)n Simple_repeat Simple_repeat 2 45 0 948 185 0 0 chr6 128217007 128217158 -54198084 - FRAM SINE Alu -26 150 1 2885 174 24 14 chr6 128218065 128218617 -54196625 + MER89 LTR ERV1 1 557 -2 243 282 70 21 chr6 128220087 128220229 -54195013 + MIR SINE MIR 56 204 -58 335 358 24 35 chr6 128220356 128220545 -54194697 + MIR SINE MIR 12 199 -63 2461 160 44 9 chr6 128220545 128220996 -54194246 + MLT1C LTR MaLR 1 467 0 335 358 24 35 chr6 128220996 128221060 -54194182 + MIR SINE MIR 199 262 0 2286 114 3 0 chr6 128221089 128221397 -54193845 - AluSc SINE Alu 0 309 1 1953 111 3 87 chr6 128222095 128222427 -54192815 + AluSq SINE Alu 1 304 -9 26 30 0 0 chr6 128222773 128222806 -54192436 + AT_rich Low_complexity Low_complexity 1 33 0 2374 108 0 0 chr6 128223586 128223891 -54191351 - AluSq SINE Alu -8 305 1 218 308 75 9 chr6 128224785 128224892 -54190350 + L2 LINE L2 3118 3231 -41 225 184 0 0 chr6 128224977 128225026 -54190216 + L2 LINE L2 3265 3313 0 487 273 67 35 chr6 128225226 128225508 -54189734 - L1ME4a LINE L1 -188 5933 5643 2292 119 0 0 chr6 128226007 128226310 -54188932 - AluSx SINE Alu -9 303 1 318 183 169 0 chr6 128226402 128226473 -54188769 + AluJ/FLAM SINE Alu 1 83 -219 1395 62 0 0 chr6 128226891 128227067 -54188175 + L1PA5 LINE L1 5979 6154 0 194 277 142 27 chr6 128231027 128231175 -54184067 - MIR SINE MIR 0 262 98 864 308 25 70 chr6 128231182 128231708 -54183534 + L2 LINE L2 2808 3309 -4 2323 78 0 10 chr6 128232366 128232675 -54182567 - AluY SINE Alu -5 306 1 2225 141 0 0 chr6 128233846 128234158 -54181084 - AluSq SINE Alu -1 312 1 188 231 0 0 chr6 128234911 128234950 -54180292 - MIR SINE MIR -6 256 218 270 308 88 38 chr6 128235937 128236096 -54179146 - L2 LINE L2 -119 3153 2987 626 264 60 87 chr6 128236845 128237363 -54177879 + LTR33A LTR ERVL 4 507 -16 13270 98 17 24 chr6 128237414 128239501 -54175741 + L1PA8 LINE L1 3425 5474 -698 2083 129 0 7 chr6 128239501 128239824 -54175418 + AluSq SINE Alu 1 313 0 13270 98 17 24 chr6 128239824 128240519 -54174723 + L1PA8 LINE L1 5474 6172 0 252 0 0 0 chr6 128241827 128241855 -54173387 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 199 175 25 0 chr6 128242324 128242364 -54172878 - L2 LINE L2 -1 3271 3231 21 36 0 0 chr6 128242460 128242488 -54172754 + AT_rich Low_complexity Low_complexity 1 28 0 368 264 0 11 chr6 128242530 128242621 -54172621 + L2 LINE L2 3224 3313 0 246 258 161 11 chr6 128243750 128243843 -54171399 - MIR SINE MIR -38 224 118 345 294 42 25 chr6 128243984 128244103 -54171139 - MIR SINE MIR -56 152 32 207 0 0 0 chr6 128244662 128244685 -54170557 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 380 343 70 17 chr6 128245521 128245693 -54169549 - MER5A DNA MER1_type -2 187 7 1309 111 0 11 chr6 128245793 128245974 -54169268 - AluSg/x SINE Alu -15 297 119 254 274 41 0 chr6 128246056 128246129 -54169113 + MIR3 SINE MIR 119 194 -14 520 309 124 24 chr6 128246924 128247254 -54167988 - L2 LINE L2 -54 3259 2897 24 32 0 0 chr6 128247800 128247831 -54167411 + AT_rich Low_complexity Low_complexity 1 31 0 348 164 96 0 chr6 128248844 128248917 -54166325 + MER116 DNA Mariner 1 80 0 1908 153 3 3 chr6 128251082 128251376 -54163866 - AluJb SINE Alu -18 294 1 939 237 51 14 chr6 128251588 128251803 -54163439 + MER58A DNA MER1_type 1 223 -1 399 117 52 13 chr6 128252292 128252369 -54162873 - L1MA9 LINE L1 0 6312 6233 2353 140 45 1 chr6 128252435 128253090 -54162152 - L1M2 LINE L1 -650 5662 4980 30 0 0 0 chr6 128254556 128254586 -54160656 + AT_rich Low_complexity Low_complexity 1 30 0 581 345 62 33 chr6 128255427 128255451 -54159791 + L3 LINE CR1 444 466 -1111 1597 171 17 20 chr6 128255451 128255750 -54159492 - AluJo SINE Alu -14 298 1 581 345 62 33 chr6 128255750 128256061 -54159181 + L3 LINE CR1 466 789 -788 1926 86 0 26 chr6 128256139 128256406 -54158836 - AluY SINE Alu -12 299 40 189 0 0 0 chr6 128256407 128256428 -54158814 + (T)n Simple_repeat Simple_repeat 1 21 0 469 331 154 20 chr6 128256532 128256876 -54158366 + L3 LINE CR1 1161 1550 -27 588 272 136 27 chr6 128256877 128257178 -54158064 - LTR16C LTR ERVL 0 491 158 426 160 32 11 chr6 128257722 128257816 -54157426 + HsTC2 DNA Tc2 1798 1893 -5 1782 160 62 3 chr6 128259222 128259547 -54155695 + MER2 DNA MER2_type 1 344 0 205 293 28 38 chr6 128259807 128259913 -54155329 + MIR SINE MIR 94 198 -64 414 288 55 25 chr6 128260909 128261072 -54154170 + MIR SINE MIR 1 168 -94 22 56 0 0 chr6 128261213 128261249 -54153993 + AT_rich Low_complexity Low_complexity 1 36 0 181 250 21 0 chr6 128263667 128263715 -54151527 + MIR SINE MIR 105 153 -109 1696 173 0 0 chr6 128264914 128265186 -54150056 - AluJo SINE Alu -40 272 1 2342 86 3 3 chr6 128265393 128265694 -54149548 - AluSg SINE Alu -9 301 1 798 334 126 36 chr6 128265713 128266272 -54148970 + L2 LINE L2 2658 3267 -5 22 70 0 0 chr6 128266379 128266422 -54148820 + AT_rich Low_complexity Low_complexity 1 43 0 1935 142 24 0 chr6 128267589 128267885 -54147357 + AluSx SINE Alu 1 303 -9 180 279 152 25 chr6 128267947 128268026 -54147216 - L2 LINE L2 -25 3288 3200 2141 107 3 7 chr6 128268670 128268970 -54146272 + AluSx SINE Alu 1 299 -13 4410 207 68 31 chr6 128269002 128270192 -54145050 - Charlie1a DNA MER1_type -1308 1453 208 1514 173 12 77 chr6 128270192 128270516 -54144726 + AluJo SINE Alu 6 308 -4 4410 207 68 31 chr6 128270516 128270651 -54144591 - Charlie1a DNA MER1_type -2553 208 79 393 232 12 0 chr6 128270803 128270885 -54144357 - Charlie1a DNA MER1_type -1360 95 13 1488 290 208 4 chr6 128272090 128272205 -54143037 - L2 LINE L2 -32 3281 3191 4672 158 115 38 chr6 128272205 128273347 -54141895 - Tigger3b DNA MER2_type -1 1230 1 1488 290 208 4 chr6 128273347 128273394 -54141848 - L2 LINE L2 -122 3191 3155 883 185 84 127 chr6 128273394 128273773 -54141469 + MLT1A1 LTR MaLR 1 363 -2 1488 290 208 4 chr6 128273773 128274903 -54140339 - L2 LINE L2 -158 3155 1710 398 315 99 74 chr6 128276369 128276804 -54138438 - L2 LINE L2 -17 3255 2810 238 295 0 0 chr6 128278187 128278248 -54136994 + MIR3 SINE MIR 142 202 -6 36 53 0 0 chr6 128278537 128278594 -54136648 + AT_rich Low_complexity Low_complexity 1 57 0 1910 155 14 0 chr6 128279376 128279672 -54135570 + AluJb SINE Alu 2 301 -11 2349 85 3 0 chr6 128282407 128282702 -54132540 - AluY SINE Alu -15 296 1 211 290 0 0 chr6 128283961 128284030 -54131212 + A-rich Low_complexity Low_complexity 1 69 0 2214 96 0 3 chr6 128284535 128284826 -54130416 - AluSg SINE Alu -20 290 1 1703 164 51 3 chr6 128285075 128285368 -54129874 - AluJb SINE Alu -5 307 1 1999 29 0 0 chr6 128285537 128285775 -54129467 + L1PA4 LINE L1 5918 6155 0 774 335 79 27 chr6 128286531 128287126 -54128116 - L2 LINE L2 -340 2974 2349 579 269 206 23 chr6 128287464 128287813 -54127429 - L1MC/D LINE L1 -1995 5813 5401 1950 115 52 3 chr6 128287839 128288127 -54127115 - AluSc SINE Alu -6 303 2 225 227 27 40 chr6 128288515 128288590 -54126652 - L1MC/D LINE L1 -1991 5817 5744 355 305 94 20 chr6 128288667 128288870 -54126372 - L1MC/D LINE L1 -864 5282 5065 3284 155 21 28 chr6 128289074 128289679 -54125563 + MER6A DNA MER2_type 5 605 0 363 259 37 44 chr6 128289937 128290072 -54125170 + MIR SINE MIR 83 216 -46 22 0 0 0 chr6 128290919 128290941 -54124301 + AT_rich Low_complexity Low_complexity 1 22 0 362 267 101 57 chr6 128291123 128291316 -54123926 - MIR SINE MIR -49 213 8 1910 131 69 3 chr6 128292025 128292315 -54122927 - AluSx SINE Alu -3 309 1 231 194 37 111 chr6 128292336 128292444 -54122798 - L1MC5 LINE L1 -31 7930 7831 299 219 89 77 chr6 128292521 128292690 -54122552 - L1MC5 LINE L1 -182 7779 7609 2104 140 0 16 chr6 128292873 128293187 -54122055 - AluJo SINE Alu -1 311 3 666 103 0 0 chr6 128293503 128293600 -54121642 + L1MB8 LINE L1 6066 6162 -16 428 310 77 45 chr6 128293998 128294308 -54120934 + L1ME4a LINE L1 5537 5856 -265 397 241 29 82 chr6 128294334 128294504 -54120738 + L1ME LINE L1 567 727 -5907 303 336 0 21 chr6 128294589 128294732 -54120510 + L1ME LINE L1 853 992 -5642 864 249 48 48 chr6 128294925 128295409 -54119833 + L1ME LINE L1 875 1431 -5215 2228 87 0 55 chr6 128295409 128295719 -54119523 + AluSg SINE Alu 1 293 -17 864 249 48 48 chr6 128295719 128295797 -54119445 + L1ME LINE L1 1431 1508 -5138 774 203 58 0 chr6 128295818 128295956 -54119286 + FRAM SINE Alu 1 146 -30 192 125 0 0 chr6 128295958 128295990 -54119252 + (GA)n Simple_repeat Simple_repeat 2 33 0 877 266 46 73 chr6 128295994 128296560 -54118682 + L1ME LINE L1 1535 2253 -4572 655 237 73 109 chr6 128296822 128297151 -54118091 - LTR40a LTR ERVL -133 386 70 1566 228 50 50 chr6 128297157 128297234 -54118008 + L1ME2 LINE L1 5617 5693 -471 1986 130 3 10 chr6 128297234 128297533 -54117709 - AluSx SINE Alu -15 297 1 1566 228 50 50 chr6 128297533 128297991 -54117251 + L1ME2 LINE L1 5692 6152 -12 1454 217 35 0 chr6 128298045 128298331 -54116911 - AluJb SINE Alu -16 296 1 361 225 81 50 chr6 128299838 128299998 -54115244 - MER103 DNA DNA -1 165 1 273 296 136 32 chr6 128301189 128301314 -54113928 + L2 LINE L2 3134 3271 -1 1788 125 45 33 chr6 128301768 128302105 -54113137 + THE1C LTR MaLR 35 375 0 2486 68 3 3 chr6 128302654 128302961 -54112281 + AluY SINE Alu 1 307 -4 351 0 0 0 chr6 128303242 128303281 -54111961 + (TG)n Simple_repeat Simple_repeat 2 40 0 306 293 160 4 chr6 128304181 128304406 -54110836 + Charlie7 DNA MER1_type 58 317 -2295 1379 200 157 44 chr6 128304409 128304930 -54110312 + Charlie7 DNA MER1_type 1429 2008 -604 1793 169 3 7 chr6 128304981 128305277 -54109965 - AluJo SINE Alu -17 295 1 23 33 0 0 chr6 128305289 128305319 -54109923 + AT_rich Low_complexity Low_complexity 1 30 0 11948 120 58 25 chr6 128305323 128306418 -54108824 + Tigger1 DNA MER2_type 1 1058 -1360 2143 124 13 3 chr6 128306418 128306717 -54108525 + AluSx SINE Alu 1 302 -10 11948 120 58 25 chr6 128306717 128306988 -54108254 + Tigger1 DNA MER2_type 1058 1318 -1100 1872 149 10 10 chr6 128306988 128307290 -54107952 + AluSx SINE Alu 1 302 -10 11948 120 58 25 chr6 128307290 128307926 -54107316 + Tigger1 DNA MER2_type 1318 2071 -347 216 0 0 0 chr6 128308109 128308133 -54107109 + (TCTCCC)n Simple_repeat Simple_repeat 3 26 0 2188 59 44 0 chr6 128309446 128309740 -54105502 - AluY SINE Alu 0 306 1 21 36 0 0 chr6 128310895 128310923 -54104319 + AT_rich Low_complexity Low_complexity 1 28 0 586 250 10 65 chr6 128311973 128312173 -54103069 + MER5A DNA MER1_type 1 189 0 400 267 72 83 chr6 128312337 128312461 -54102781 + MER5B DNA MER1_type 1 124 -54 645 69 0 0 chr6 128312461 128312548 -54102694 + (TG)n Simple_repeat Simple_repeat 2 88 0 400 267 72 83 chr6 128312548 128312603 -54102639 + MER5B DNA MER1_type 124 178 0 23 0 0 0 chr6 128312903 128312926 -54102316 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 128314255 128314277 -54100965 + AT_rich Low_complexity Low_complexity 1 22 0 197 328 17 0 chr6 128315370 128315428 -54099814 + L2 LINE L2 3137 3195 -77 587 263 33 7 chr6 128317830 128317982 -54097260 + MIR SINE MIR 41 196 -66 511 217 57 74 chr6 128319118 128319293 -54095949 - MER5B DNA MER1_type -6 172 1 192 278 56 0 chr6 128319302 128319356 -54095886 + MIR SINE MIR 20 76 -132 33 0 0 0 chr6 128320366 128320399 -54094843 + AT_rich Low_complexity Low_complexity 1 33 0 641 281 67 22 chr6 128320887 128321111 -54094131 + MIR SINE MIR 28 261 -1 276 30 0 0 chr6 128321211 128321244 -54093998 + (TG)n Simple_repeat Simple_repeat 2 34 0 229 355 16 8 chr6 128321335 128321456 -54093786 + L2 LINE L2 2238 2359 -955 656 288 110 4 chr6 128322404 128322726 -54092516 + L2 LINE L2 2904 3272 0 8907 101 17 11 chr6 128322747 128323074 -54092168 + HSMAR1 DNA Mariner 1 324 -963 2161 114 0 3 chr6 128323074 128323372 -54091870 + AluSc SINE Alu 1 297 -12 8907 101 17 11 chr6 128323372 128324323 -54090919 + HSMAR1 DNA Mariner 324 1287 0 22 35 0 0 chr6 128324461 128324490 -54090752 + AT_rich Low_complexity Low_complexity 1 29 0 264 328 42 17 chr6 128324838 128324957 -54090285 + MIR3 SINE MIR 46 167 -41 382 226 12 0 chr6 128326136 128326220 -54089022 - MIR3 SINE MIR -15 193 109 21 0 0 0 chr6 128326423 128326444 -54088798 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 128326477 128326504 -54088738 + AT_rich Low_complexity Low_complexity 1 27 0 389 329 59 29 chr6 128327193 128327363 -54087879 + MIR3 SINE MIR 10 184 -24 191 323 71 50 chr6 128327382 128327481 -54087761 - L2 LINE L2 -16 3297 3197 2066 135 33 0 chr6 128328854 128329187 -54086055 - MER2 DNA MER2_type 0 344 1 24 53 0 0 chr6 128329280 128329318 -54085924 + AT_rich Low_complexity Low_complexity 1 38 0 262 221 96 61 chr6 128329396 128329550 -54085692 + MIR SINE MIR 28 191 -71 336 364 73 6 chr6 128330116 128330281 -54084961 + Tigger8 DNA MER2_type 27 202 -464 303 213 50 12 chr6 128330287 128330367 -54084875 + MIR SINE MIR 82 164 -98 768 198 155 5 chr6 128330645 128330832 -54084410 - MER58C DNA MER1_type 0 215 1 465 275 47 52 chr6 128330832 128331065 -54084177 - L1ME4a LINE L1 -267 5854 5623 279 208 0 0 chr6 128331105 128331158 -54084084 - MER58 DNA MER1_type -95 246 194 2512 64 0 3 chr6 128331529 128331841 -54083401 - AluY SINE Alu 0 311 1 322 222 33 56 chr6 128331955 128332045 -54083197 - L2 LINE L2 0 3313 3226 2292 107 30 35 chr6 128333002 128333375 -54081867 + L1PA15 LINE L1 5464 5834 -331 2591 97 22 6 chr6 128333375 128333737 -54081505 + MLT2A1 LTR ERVL 1 368 -76 38 75 0 0 chr6 128333755 128333835 -54081407 + AT_rich Low_complexity Low_complexity 1 80 0 242 138 0 52 chr6 128333844 128333902 -54081340 + MLT2A1 LTR ERVL 399 453 0 2225 119 3 12 chr6 128333902 128334237 -54081005 + L1PA15 LINE L1 5830 6161 -4 830 222 27 5 chr6 128334667 128334852 -54080390 + MER5A DNA MER1_type 1 189 0 1910 161 7 10 chr6 128335656 128335961 -54079281 - AluJo SINE Alu -8 304 1 39 38 0 0 chr6 128336060 128336113 -54079129 + AT_rich Low_complexity Low_complexity 1 53 0 4517 200 53 21 chr6 128336234 128337860 -54077382 + L1MC/D LINE L1 4027 5708 -625 23 68 0 0 chr6 128338050 128338094 -54077148 + AT_rich Low_complexity Low_complexity 1 44 0 335 172 40 99 chr6 128338160 128338308 -54076934 - L1ME3A LINE L1 -85 6077 5944 1173 218 112 52 chr6 128338365 128338847 -54076395 - L1MC5 LINE L1 -435 7526 7016 1835 171 20 0 chr6 128339151 128339443 -54075799 - AluJb SINE Alu -14 298 1 937 195 82 114 chr6 128340299 128340391 -54074851 - L1MC5 LINE L1 -861 6947 6854 727 183 0 15 chr6 128340391 128340522 -54074720 - FLAM_A SINE Alu -4 129 1 937 195 82 114 chr6 128340522 128340940 -54074302 - L1MC5 LINE L1 -954 6854 6536 1027 158 73 28 chr6 128340942 128341173 -54074069 - L1MB8 LINE L1 -27 6151 5898 346 300 14 7 chr6 128341171 128341311 -54073931 - HAL1b LINE L1 -710 638 498 * 2245 100 0 13 chr6 128342067 128342366 -54072876 - AluSx SINE Alu -17 295 1 216 227 107 27 chr6 128343428 128343503 -54071739 + MIR SINE MIR 100 180 -82 536 313 58 35 chr6 128343977 128344376 -54070866 - L1ME3A LINE L1 -267 5854 5447 2205 86 0 67 chr6 128345679 128345857 -54069385 - AluSx SINE Alu -18 294 144 2895 3 0 0 chr6 128345857 128346168 -54069074 - AluYa5 SINE Alu 0 311 1 2205 86 0 67 chr6 128346168 128346303 -54068939 - AluSx SINE Alu -168 144 2 653 325 118 21 chr6 128346674 128347006 -54068236 + L2 LINE L2 2950 3313 0 21 0 0 0 chr6 128347624 128347645 -54067597 + AT_rich Low_complexity Low_complexity 1 21 0 1370 166 15 119 chr6 128348102 128348237 -54067005 + AluJo SINE Alu 1 148 -154 2298 69 0 3 chr6 128348237 128348528 -54066714 + AluY SINE Alu 21 310 -1 1370 166 15 119 chr6 128348528 128348729 -54066513 + AluJo SINE Alu 148 302 0 2595 122 24 12 chr6 128349183 128349594 -54065648 + MSTB LTR MaLR 11 426 0 526 348 130 30 chr6 128349618 128350371 -54064871 + L2 LINE L2 769 1596 -1718 710 333 124 13 chr6 128350377 128350830 -54064412 + L2 LINE L2 1805 2307 -1007 651 184 77 54 chr6 128350831 128350999 -54064243 + MIR SINE MIR 35 206 -56 337 248 40 79 chr6 128351001 128351102 -54064140 + L2 LINE L2 3175 3271 -1 794 243 18 60 chr6 128351956 128352174 -54063068 + MLT1I LTR MaLR 81 289 -120 1980 99 0 41 chr6 128352337 128352662 -54062580 + AluSg SINE Alu 1 313 0 188 208 19 57 chr6 128353917 128353970 -54061272 - MIR SINE MIR -3 259 209 417 258 25 17 chr6 128354652 128354772 -54060470 + L2 LINE L2 3189 3309 -4 1252 165 27 9 chr6 128355460 128355684 -54059558 - MSTB LTR MaLR 0 426 199 702 171 0 43 chr6 128355700 128355840 -54059402 - FLAM_C SINE Alu -9 134 1 1209 149 5 10 chr6 128355840 128356034 -54059208 - MSTB LTR MaLR -232 194 2 285 193 35 0 chr6 128358189 128358246 -54056996 + MER103 DNA DNA 96 154 -12 26 64 0 0 chr6 128359378 128359425 -54055817 + AT_rich Low_complexity Low_complexity 1 47 0 215 186 0 17 chr6 128359628 128359687 -54055555 + (TA)n Simple_repeat Simple_repeat 1 58 0 335 165 0 47 chr6 128361490 128361575 -54053667 + L1MA5A LINE L1 6216 6296 -1 2183 103 53 39 chr6 128361598 128361957 -54053285 + THE1B LTR MaLR 1 364 0 814 278 39 4 chr6 128362399 128362633 -54052609 - MIR SINE MIR 0 262 21 495 266 39 8 chr6 128362964 128363092 -54052150 - L2 LINE L2 -5 3308 3177 462 351 97 25 chr6 128363626 128364028 -54051214 - L3 LINE CR1 -788 789 359 413 65 0 0 chr6 128368293 128368355 -54046887 - Alu SINE Alu -3 309 248 718 154 0 83 chr6 128368356 128368512 -54046730 - FLAM_C SINE Alu 0 143 1 2217 116 0 0 chr6 128369157 128369458 -54045784 - AluY SINE Alu -10 301 1 32 26 0 0 chr6 128370134 128370173 -54045069 + AT_rich Low_complexity Low_complexity 1 39 0 2365 95 0 0 chr6 128370808 128371114 -54044128 - AluSg SINE Alu -2 308 3 326 306 41 0 chr6 128371230 128371328 -54043914 + MIR3 SINE MIR 76 177 -31 885 281 174 25 chr6 128371447 128371999 -54043243 + Charlie7 DNA MER1_type 57 690 -1922 310 331 98 16 chr6 128372118 128372302 -54042940 + MIR SINE MIR 1 199 -63 2261 106 0 3 chr6 128372949 128373242 -54042000 - AluSc SINE Alu -17 292 1 1739 168 3 7 chr6 128373585 128373870 -54041372 - AluJo SINE Alu -16 296 13 1960 191 77 58 chr6 128373962 128374549 -54040693 + LTR38B LTR ERV1 1 598 -12 612 243 219 6 chr6 128376431 128376636 -54038606 + MIR SINE MIR 4 251 -11 189 304 30 82 chr6 128376814 128376949 -54038293 + MIR SINE MIR 79 206 -56 409 274 80 0 chr6 128377147 128377260 -54037982 + MER5B DNA MER1_type 30 151 -27 495 299 41 53 chr6 128378586 128378830 -54036412 - MIR SINE MIR -7 255 15 198 372 116 20 chr6 128378979 128379178 -54036064 + MIR SINE MIR 26 243 -19 25 51 0 0 chr6 128379180 128379219 -54036023 + AT_rich Low_complexity Low_complexity 1 39 0 191 250 47 47 chr6 128379958 128380022 -54035220 + MIR SINE MIR 70 133 -75 634 294 65 0 chr6 128381570 128381771 -54033471 + MIR SINE MIR 48 261 -1 2125 167 78 49 chr6 128382090 128382617 -54032625 - LTR55 LTR ERV -6 542 1 701 180 33 13 chr6 128383318 128383468 -54031774 + L1MC1 LINE L1 6181 6333 0 398 177 0 10 chr6 128384197 128384293 -54030949 + MER53 DNA DNA 95 189 0 22 0 0 0 chr6 128384493 128384515 -54030727 + AT_rich Low_complexity Low_complexity 1 22 0 322 271 93 9 chr6 128384994 128385101 -54030141 - MIR SINE MIR -40 222 107 2273 83 41 0 chr6 128386738 128387028 -54028214 - AluSq SINE Alu -11 302 1 34 42 0 0 chr6 128387481 128387529 -54027713 + AT_rich Low_complexity Low_complexity 1 48 0 2860 157 46 52 chr6 128387638 128388269 -54026973 - L1MC1 LINE L1 -5 6328 5702 352 303 136 40 chr6 128388776 128388974 -54026268 - MIR SINE MIR -6 256 40 303 71 0 0 chr6 128389913 128389955 -54025287 + (TAA)n Simple_repeat Simple_repeat 2 43 0 2130 108 3 7 chr6 128390539 128390834 -54024408 - AluSg SINE Alu -16 294 1 2107 133 3 3 chr6 128392180 128392480 -54022762 - AluSx SINE Alu -12 300 1 2306 151 45 19 chr6 128394635 128395058 -54020184 + Tigger2a DNA MER2_type 1 434 0 649 243 41 46 chr6 128395377 128395595 -54019647 - MER20 DNA MER1_type -2 217 1 786 252 63 43 chr6 128395618 128395872 -54019370 - MIR SINE MIR 0 262 4 2024 124 18 0 chr6 128395938 128396213 -54019029 + AluSx SINE Alu 1 280 -32 2860 111 201 25 chr6 128396582 128397104 -54018138 - LTR18B LTR ERVL 0 614 1 1725 113 143 33 chr6 128397108 128397444 -54017798 - THE1C LTR MaLR -2 373 1 855 201 30 70 chr6 128397538 128397837 -54017405 + MLT1E2 LTR MaLR 2 288 -338 480 206 21 0 chr6 128397843 128397940 -54017302 + U6 snRNA snRNA 1 99 -8 1730 98 0 0 chr6 128397941 128398166 -54017076 - AluSg/x SINE Alu -1 309 85 1069 139 35 0 chr6 128398176 128398383 -54016859 + L1MA8 LINE L1 6056 6270 -21 1473 196 65 6 chr6 128398408 128398730 -54016512 + MLT1E2 LTR MaLR 279 619 -7 227 351 85 0 chr6 128398926 128399020 -54016222 - MIR SINE MIR -98 164 63 1039 322 141 26 chr6 128400279 128401130 -54014112 + L2 LINE L2 1710 2658 -656 392 314 72 58 chr6 128401225 128401588 -54013654 + L2 LINE L2 2866 3233 -39 29 0 0 0 chr6 128401645 128401674 -54013568 + AT_rich Low_complexity Low_complexity 1 29 0 272 91 23 0 chr6 128402118 128402162 -54013080 + (TA)n Simple_repeat Simple_repeat 2 46 0 474 286 62 87 chr6 128402447 128402708 -54012534 + MIR SINE MIR 1 250 -12 1810 86 116 11 chr6 128403097 128403365 -54011877 + AluSg1 SINE Alu 1 296 -13 23 0 0 0 chr6 128403376 128403399 -54011843 + AT_rich Low_complexity Low_complexity 1 23 0 387 293 32 0 chr6 128405864 128405987 -54009255 - MIR SINE MIR -30 232 106 874 197 22 17 chr6 128406508 128406628 -54008614 + MER5A DNA MER1_type 2 125 -64 2295 100 7 0 chr6 128406628 128406929 -54008313 - AluSx SINE Alu -8 304 2 874 197 22 17 chr6 128406929 128406986 -54008256 + MER5A DNA MER1_type 125 180 -9 346 309 77 46 chr6 128407549 128407876 -54007366 + MARNA DNA Mariner 44 380 -206 313 297 40 40 chr6 128407989 128408137 -54007105 - L2 LINE L2 -4 3268 3121 346 292 35 12 chr6 128409861 128410032 -54005210 + L1ME4a LINE L1 5661 5835 -286 2107 144 0 0 chr6 128410377 128410675 -54004567 + AluSx SINE Alu 7 304 -8 184 175 111 63 chr6 128412059 128412122 -54003120 + MIR3 SINE MIR 89 154 -54 674 182 0 0 chr6 128412401 128412511 -54002731 + FLAM_C SINE Alu 6 115 -28 22 0 0 0 chr6 128412519 128412541 -54002701 + AT_rich Low_complexity Low_complexity 1 22 0 898 265 55 0 chr6 128412949 128413187 -54002055 - MIR SINE MIR 0 262 12 263 347 157 0 chr6 128413903 128414024 -54001218 + MIR3 SINE MIR 61 200 -8 2250 104 10 0 chr6 128416389 128416688 -53998554 + AluSx SINE Alu 1 302 -10 426 304 137 60 chr6 128419202 128419781 -53995461 + L1M2 LINE L1 476 1049 -5800 466 261 145 85 chr6 128420060 128420634 -53994608 - L1M2 LINE L1 -5600 1249 642 21 0 0 0 chr6 128421941 128421962 -53993280 + AT_rich Low_complexity Low_complexity 1 21 0 32 43 0 0 chr6 128423276 128423322 -53991920 + AT_rich Low_complexity Low_complexity 1 46 0 199 211 35 18 chr6 128424496 128424553 -53990689 + MIR SINE MIR 82 139 -69 1879 189 48 19 chr6 128424925 128425401 -53989841 - L1MA7 LINE L1 -5 6286 5797 24 0 0 0 chr6 128425680 128425704 -53989538 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 128426571 128426597 -53988645 + AT_rich Low_complexity Low_complexity 1 26 0 3495 149 22 5 chr6 128426863 128427488 -53987754 + L1MB8 LINE L1 5538 6173 -5 2182 122 0 3 chr6 128427909 128428212 -53987030 - AluSq SINE Alu -11 302 1 1371 197 44 0 chr6 128428458 128428732 -53986510 + AluJo SINE Alu 5 290 -22 2123 89 14 0 chr6 128428806 128429110 -53986132 + AluSq SINE Alu 1 308 0 201 239 0 0 chr6 128429148 128429194 -53986048 + CT-rich Low_complexity Low_complexity 1 46 0 222 198 33 33 chr6 128429979 128430070 -53985172 + (TA)n Simple_repeat Simple_repeat 1 91 0 234 0 0 0 chr6 128430807 128430833 -53984409 + (TG)n Simple_repeat Simple_repeat 2 27 0 283 361 92 32 chr6 128430916 128431254 -53983988 + L2 LINE L2 994 1351 -1963 846 201 10 43 chr6 128431291 128431500 -53983742 + MER20 DNA MER1_type 17 218 -1 1357 348 78 10 chr6 128431650 128432463 -53982779 + L2 LINE L2 1522 2389 -925 227 128 0 51 chr6 128433120 128433159 -53982083 - MLT1L LTR MaLR -4 611 575 * 240 143 0 214 chr6 128433131 128433243 -53981999 - LTR67 LTR ERVL -13 544 457 305 316 89 68 chr6 128433647 128434027 -53981215 + ERVL LTR ERVL 1285 1672 -4092 2064 114 51 43 chr6 128434327 128434678 -53980564 - MER46B DNA MER2_type -7 229 1 366 200 0 0 chr6 128434630 128434700 -53980542 + MER46A DNA MER2_type 97 166 -70 * 386 285 185 36 chr6 128435254 128435703 -53979539 + L2 LINE L2 2365 2880 -434 895 231 5 5 chr6 128435744 128435930 -53979312 - MLT1A2 LTR MaLR 0 374 189 393 156 0 0 chr6 128435953 128436030 -53979212 + GA-rich Low_complexity Low_complexity 2 78 0 610 150 72 72 chr6 128436031 128436137 -53979105 - MLT1A2 LTR MaLR -223 167 59 2481 94 46 14 chr6 128436137 128436488 -53978754 - THE1B LTR MaLR 0 364 3 610 150 72 72 chr6 128436488 128436548 -53978694 - MLT1A2 LTR MaLR -330 60 1 3192 102 10 4 chr6 128437687 128438166 -53977076 + L1PA13 LINE L1 5680 6161 -2 4373 128 7 7 chr6 128438171 128438729 -53976513 + L1PA16 LINE L1 5484 6044 -122 2348 97 12 134 chr6 128438729 128439213 -53976029 + MER61B LTR ERV1 1 425 0 4373 128 7 7 chr6 128439213 128439328 -53975914 + L1PA16 LINE L1 6043 6157 -9 197 83 28 0 chr6 128439358 128439394 -53975848 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 3680 123 72 37 chr6 128439678 128440346 -53974896 - LTR8 LTR ERV1 0 691 1 261 341 26 15 chr6 128440598 128440741 -53974501 + MER5A DNA MER1_type 1 154 -35 655 170 0 57 chr6 128440742 128440883 -53974359 - MER5A DNA MER1_type 0 189 57 4873 158 22 48 chr6 128441120 128442225 -53973017 + L1MA9 LINE L1 5189 6281 -31 332 325 26 70 chr6 128442280 128442508 -53972734 - MIR SINE MIR -42 220 3 22 0 0 0 chr6 128443448 128443470 -53971772 + AT_rich Low_complexity Low_complexity 1 22 0 1248 223 136 57 chr6 128443748 128444166 -53971076 - MER92B LTR ERV1 0 636 186 22311 50 0 0 chr6 128444167 128446972 -53968270 - L1PA4 LINE L1 -1145 5001 2197 7239 42 0 6 chr6 128446972 128448124 -53967118 + L1PA4 LINE L1 5002 6149 -6 317 240 164 0 chr6 128448403 128448507 -53966735 + L2 LINE L2 3192 3312 -1 303 253 0 63 chr6 128448591 128448686 -53966556 + L1MC4 LINE L1 6615 6703 -1339 1286 165 38 4 chr6 128448707 128448943 -53966299 - AluJb SINE Alu -38 274 31 672 312 153 24 chr6 128450230 128450719 -53964523 - L2 LINE L2 -21 3292 2734 5162 99 42 13 chr6 128450735 128450800 -53964442 - L1MA3 LINE L1 0 7724 7662 1727 163 79 22 chr6 128450800 128451155 -53964087 - THE1C LTR MaLR 0 375 1 5162 99 42 13 chr6 128451155 128451931 -53963311 - L1MA3 LINE L1 -62 7662 6859 627 139 30 0 chr6 128451932 128452033 -53963209 - AluSg/x SINE Alu -81 231 128 2121 140 3 0 chr6 128452034 128452341 -53962901 - AluSx SINE Alu -4 308 1 1693 150 4 0 chr6 128452341 128452723 -53962519 - L1MA3 LINE L1 -743 6822 6473 1778 224 116 7 chr6 128452723 128453182 -53962060 + LTR22 LTR ERVK 1 509 0 10485 157 16 6 chr6 128453182 128455115 -53960127 - L1MA3 LINE L1 -1087 6478 4526 3454 182 47 3 chr6 128455116 128455732 -53959510 - L1MA3 LINE L1 -6911 654 12 742 230 35 13 chr6 128455780 128456010 -53959232 + L1MEc LINE L1 1713 1947 -4449 1195 198 45 57 chr6 128456111 128456215 -53959027 + L1MEc LINE L1 1948 2052 -4344 1547 195 13 50 chr6 128456215 128456513 -53958729 + AluJb SINE Alu 1 287 -25 1195 198 45 57 chr6 128456513 128456812 -53958430 + L1MEc LINE L1 2052 2346 -4050 * 1954 279 94 27 chr6 128456779 128456864 -53958378 + L1MEc LINE L1 2809 2887 -3328 2065 87 10 0 chr6 128456864 128457152 -53958090 + L1PA8 LINE L1 5879 6169 -3 1954 279 94 27 chr6 128457152 128457518 -53957724 + L1MEc LINE L1 2887 3227 -2988 1719 175 7 3 chr6 128457518 128457803 -53957439 + AluJb SINE Alu 1 286 -26 1954 279 94 27 chr6 128457803 128458385 -53956857 + L1MEc LINE L1 3227 3912 -2303 1518 194 32 54 chr6 128458423 128458794 -53956448 - MLT1A2 LTR MaLR -11 363 1 1684 248 37 29 chr6 128458794 128459355 -53955887 + L1MEc LINE L1 3939 4504 -1711 237 271 104 14 chr6 128459360 128459504 -53955738 + L1ME1 LINE L1 6004 6160 -6 320 362 45 6 chr6 128459745 128459922 -53955320 + L1MC4a LINE L1 5754 5937 -1871 1990 128 10 0 chr6 128459924 128460214 -53955028 + AluSg SINE Alu 1 293 -17 724 266 122 86 chr6 128460806 128461329 -53953913 + MLT1G1 LTR MaLR 1 514 -41 28 0 0 0 chr6 128461440 128461468 -53953774 + AT_rich Low_complexity Low_complexity 1 28 0 218 302 209 0 chr6 128461933 128462062 -53953180 + MIR3 SINE MIR 30 185 -23 910 107 0 8 chr6 128462495 128462617 -53952625 + AluSp/q SINE Alu 168 288 -25 332 316 51 28 chr6 128462793 128462970 -53952272 + L1ME4a LINE L1 5707 5887 -234 313 297 85 12 chr6 128463302 128463467 -53951775 + L1ME3A LINE L1 1636 1812 -4584 364 282 91 45 chr6 128463803 128464023 -53951219 + L1ME3A LINE L1 2232 2461 -3754 258 266 47 31 chr6 128464185 128464313 -53950929 + L1ME3A LINE L1 2765 2894 -3321 1595 216 114 88 chr6 128464470 128465196 -53950046 - LTR1B LTR ERV1 -81 745 1 2280 132 17 3 chr6 128465198 128465546 -53949696 - LTR1B-int LTR ERV1 -1 7090 6738 31908 142 19 8 chr6 128465551 128470425 -53944817 - LTR1B-int LTR ERV1 -493 6598 1668 267 244 133 11 chr6 128470425 128470515 -53944727 - LTR1B LTR ERV1 -132 694 594 42761 48 6 2 chr6 128470556 128476668 -53938574 + L1PA4 LINE L1 13 6150 -5 225 270 80 0 chr6 128476665 128476765 -53938477 + L1ME3A LINE L1 2965 3072 -3143 * 638 230 119 69 chr6 128476815 128477048 -53938194 + MER4C LTR ERV1 1 221 -244 775 185 0 0 chr6 128477048 128477167 -53938075 + FLAM_C SINE Alu 1 119 -14 638 230 119 69 chr6 128477167 128477434 -53937808 + MER4C LTR ERV1 221 465 0 702 264 78 3 chr6 128477434 128477817 -53937425 + L1ME3A LINE L1 3136 3547 -2668 1235 204 229 57 chr6 128477821 128478262 -53936980 + MER21B LTR ERV1 1 517 -346 614 254 8 0 chr6 128478257 128478383 -53936859 + MER21B LTR ERV1 685 811 -52 * 787 237 23 51 chr6 128478426 128478641 -53936601 + MER58C DNA MER1_type 7 215 0 547 299 81 3 chr6 128478642 128478926 -53936316 + L1ME3A LINE L1 3541 3846 -2369 2227 320 55 16 chr6 128479047 128479922 -53935320 + L2 LINE L2 8 916 -2398 182 304 36 0 chr6 128479903 128479959 -53935283 + MIR SINE MIR 171 228 -34 * 1601 288 81 35 chr6 128479994 128481440 -53933802 + L1ME3A LINE L1 3860 5371 -844 8158 162 17 18 chr6 128481506 128487922 -53927320 - L1PB1 LINE L1 -2 6865 3 284 323 12 6 chr6 128487953 128488117 -53927125 + L1ME3A LINE L1 5423 5587 -652 29503 111 15 54 chr6 128488234 128494642 -53920600 + L1PA7 LINE L1 9 6150 -4 1963 225 14 16 chr6 128494700 128495207 -53920035 - MLT1A2-int LTR MaLR -865 506 1 1431 221 27 29 chr6 128495207 128495582 -53919660 - MLT1A2 LTR MaLR 0 374 1 2161 303 82 4 chr6 128495582 128496348 -53918894 - L2 LINE L2 -378 2936 2111 835 224 18 50 chr6 128496375 128496652 -53918590 + L1ME3A LINE L1 5751 6018 -221 22 35 0 0 chr6 128497109 128497138 -53918104 + AT_rich Low_complexity Low_complexity 1 29 0 211 328 0 0 chr6 128500463 128500527 -53914715 - MIR SINE MIR -112 150 87 711 77 59 18 chr6 128501120 128501290 -53913952 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 875 188 67 0 chr6 128502272 128502437 -53912805 + MER45A DNA AcHobo 3 178 0 274 287 160 47 chr6 128502438 128502588 -53912654 + MER5A DNA MER1_type 21 187 -2 1805 156 61 22 chr6 128503596 128503955 -53911287 + THE1C LTR MaLR 1 373 -2 2591 163 20 18 chr6 128504669 128505172 -53910070 + L1MB2 LINE L1 5664 6167 -4 1951 89 0 8 chr6 128505916 128506174 -53909068 + AluSx SINE Alu 37 292 -20 237 346 75 77 chr6 128507236 128507999 -53907243 + L2 LINE L2 1313 2073 -1241 1913 118 22 32 chr6 128508061 128508376 -53906866 - AluSx SINE Alu 0 312 1 1074 104 0 0 chr6 128508376 128508511 -53906731 - AluSq/x SINE Alu -178 135 1 682 340 121 47 chr6 128508512 128509331 -53905911 + L2 LINE L2 2146 3049 -223 1452 135 62 14 chr6 128511040 128511328 -53903914 - L1MA7 LINE L1 -2 6289 5988 5820 113 173 101 chr6 128511395 128512978 -53902264 + pTR5 LTR ERV1 743 2438 0 333 241 0 12 chr6 128513288 128513371 -53901871 + MIR SINE MIR 171 252 -10 2054 141 3 0 chr6 128513765 128514069 -53901173 - AluJb SINE Alu -6 306 2 198 103 0 0 chr6 128514129 128514158 -53901084 + (T)n Simple_repeat Simple_repeat 1 29 0 225 237 119 0 chr6 128514205 128514264 -53900978 + L2 LINE L2 457 522 -2792 347 277 8 25 chr6 128514287 128514406 -53900836 - MIR SINE MIR -1 261 145 229 250 113 0 chr6 128514442 128514522 -53900720 + MIR SINE MIR 126 214 -48 328 289 22 22 chr6 128514555 128514645 -53900597 - MIR SINE MIR -164 98 9 2144 131 123 5 chr6 128514799 128515182 -53900060 + MSTA LTR MaLR 1 428 0 1115 324 94 19 chr6 128515305 128515783 -53899459 + L2 LINE L2 932 1445 -1869 2617 168 13 5 chr6 128515796 128516243 -53898999 + LTR32 LTR ERVL 15 465 -6 444 296 149 32 chr6 128516260 128516702 -53898540 + L2 LINE L2 1460 1953 -1361 410 264 297 12 chr6 128516711 128516957 -53898285 + L2 LINE L2 2992 3307 -6 300 288 198 0 chr6 128517979 128518090 -53897152 + MER94 DNA DNA 1 133 -1 2296 108 0 0 chr6 128518313 128518608 -53896634 + AluSq SINE Alu 3 297 -16 294 73 0 0 chr6 128518884 128518925 -53896317 + (TG)n Simple_repeat Simple_repeat 2 42 0 24 32 0 0 chr6 128519207 128519238 -53896004 + AT_rich Low_complexity Low_complexity 1 31 0 733 128 48 0 chr6 128519239 128519364 -53895878 - L1MA6 LINE L1 -16 6284 6154 289 250 106 50 chr6 128519364 128519413 -53895829 - L3 LINE CR1 -180 1397 1352 571 213 19 0 chr6 128519413 128519521 -53895721 - MER81 DNA DNA -3 111 2 289 250 106 50 chr6 128519521 128519631 -53895611 - L3 LINE CR1 -225 1352 1229 238 330 61 17 chr6 128520579 128520694 -53894548 + L2 LINE L2 1810 1929 -1385 848 356 60 35 chr6 128520707 128521508 -53893734 + L2 LINE L2 2148 2968 -346 291 146 0 0 chr6 128523732 128523787 -53891455 + (TG)n Simple_repeat Simple_repeat 2 56 0 26 0 0 0 chr6 128527425 128527451 -53887791 + AT_rich Low_complexity Low_complexity 1 26 0 399 213 32 32 chr6 128527798 128527892 -53887350 - L2 LINE L2 -19 3294 3201 205 88 29 0 chr6 128528671 128528705 -53886537 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 2438 80 21 3 chr6 128528784 128529123 -53886119 + THE1C LTR MaLR 31 375 0 260 68 0 23 chr6 128529292 128529336 -53885906 + (TC)n Simple_repeat Simple_repeat 2 44 0 336 306 224 16 chr6 128531158 128531654 -53883588 - L2 LINE L2 -910 2404 1806 1251 166 30 72 chr6 128531654 128532053 -53883189 + MSTB2 LTR MaLR 1 455 -2 652 289 76 9 chr6 128532195 128532420 -53882822 - MIR SINE MIR -14 248 9 940 167 43 32 chr6 128532424 128532610 -53882632 - MER5A DNA MER1_type 0 189 2 506 139 63 0 chr6 128532618 128532697 -53882545 + MER5A DNA MER1_type 105 188 -1 1020 289 168 12 chr6 128532915 128533320 -53881922 + L3 LINE CR1 406 873 -704 635 264 28 17 chr6 128533955 128534133 -53881109 - MIR SINE MIR -50 212 33 21 0 0 0 chr6 128534310 128534331 -53880911 + AT_rich Low_complexity Low_complexity 1 21 0 270 358 55 49 chr6 128534449 128534776 -53880466 + L2 LINE L2 2580 2908 -406 483 278 71 47 chr6 128535156 128535368 -53879874 + MIR SINE MIR 46 262 0 999 190 79 69 chr6 128536858 128537304 -53877938 + MLT1D LTR MaLR 6 465 -2 2571 99 11 11 chr6 128537594 128537958 -53877284 - THE1B LTR MaLR 0 364 1 29 28 0 0 chr6 128538034 128538070 -53877172 + AT_rich Low_complexity Low_complexity 1 36 0 516 213 60 40 chr6 128539090 128539240 -53876002 + MIR SINE MIR 78 230 -32 213 292 56 0 chr6 128539245 128539317 -53875925 + L2 LINE L2 3234 3309 -4 596 321 51 6 chr6 128539650 128539900 -53875342 - MIR SINE MIR 0 262 2 703 217 16 0 chr6 128540677 128540806 -53874436 + FLAM_C SINE Alu 1 131 -2 401 270 107 62 chr6 128541118 128541860 -53873382 + L1M3d LINE L1 1010 1738 -4606 591 272 40 17 chr6 128542735 128543033 -53872209 + L1ME3A LINE L1 2084 2388 -4008 1090 229 118 4 chr6 128543051 128543322 -53871920 - MLT1D LTR MaLR 0 505 204 5376 252 75 44 chr6 128543326 128545984 -53869258 + L1ME3A LINE L1 2706 5445 -770 1292 235 98 18 chr6 128545969 128546369 -53868873 + L1ME3A LINE L1 5808 6239 0 * 389 258 46 88 chr6 128546430 128546690 -53868552 + L1MC4 LINE L1 7705 7953 -89 624 285 85 20 chr6 128547723 128547923 -53867319 + MIR SINE MIR 28 240 -22 216 241 0 17 chr6 128547956 128548014 -53867228 + GA-rich Low_complexity Low_complexity 2 58 0 628 279 75 5 chr6 128548527 128548728 -53866514 + MIR SINE MIR 47 261 -1 2157 113 0 25 chr6 128549175 128549493 -53865749 - AluSx SINE Alu -2 310 1 180 399 21 21 chr6 128551170 128551358 -53863884 - L2 LINE L2 -215 3057 2870 537 273 69 37 chr6 128551508 128551724 -53863518 + MLT1J1 LTR MaLR 214 436 -10 336 175 0 0 chr6 128551819 128551882 -53863360 + (TTCA)n Simple_repeat Simple_repeat 2 64 0 231 377 82 0 chr6 128551882 128552004 -53863238 - L2 LINE L2 0 3313 3182 697 198 142 12 chr6 128552047 128552209 -53863033 + MER5A DNA MER1_type 7 189 0 191 349 81 12 chr6 128552235 128552321 -53862921 - L2 LINE L2 -165 3107 3016 1988 117 32 0 chr6 128553134 128553417 -53861825 - AluSx SINE Alu -20 292 1 519 304 74 59 chr6 128553417 128553756 -53861486 + L2 LINE L2 2925 3268 -4 587 293 119 15 chr6 128553960 128554356 -53860886 + L1ME4a LINE L1 5616 6052 -69 434 331 49 34 chr6 128554680 128555006 -53860236 - L2 LINE L2 -2645 669 339 1391 139 112 1 chr6 128555764 128556086 -53859156 - MER33 DNA MER1_type -3 321 1 300 178 14 55 chr6 128556089 128556162 -53859080 - L1ME1 LINE L1 -151 6015 5946 231 36 0 0 chr6 128556192 128556220 -53859022 + (GA)n Simple_repeat Simple_repeat 1 28 0 1621 149 33 141 chr6 128556221 128556490 -53858752 - MLT2D LTR ERVL -61 353 56 2976 154 32 4 chr6 128556490 128557015 -53858227 + L1MB2 LINE L1 5621 6160 -11 1621 149 33 141 chr6 128557015 128557079 -53858163 - MLT2D LTR ERVL -358 56 66 776 173 0 8 chr6 128557079 128557206 -53858036 + FLAM_C SINE Alu 1 126 -7 1621 149 33 141 chr6 128557206 128557267 -53857975 - MLT2D LTR ERVL -347 67 1 1432 185 11 0 chr6 128557272 128557542 -53857700 - L1ME1 LINE L1 -220 5946 5674 557 184 0 0 chr6 128557665 128557768 -53857474 + L1PB1 LINE L1 944 1046 -5817 14296 201 15 13 chr6 128557772 128559177 -53856065 + L1PB1 LINE L1 1094 2494 -4373 4652 35 17 16 chr6 128559177 128559754 -53855488 + L1PA4 LINE L1 5572 6149 -6 14296 201 15 13 chr6 128559754 128563538 -53851704 + L1PB1 LINE L1 2494 6496 -371 432 0 0 0 chr6 128563548 128563596 -53851646 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 279 98 27 54 chr6 128563602 128563714 -53851528 + (TA)n Simple_repeat Simple_repeat 1 109 0 2179 148 6 0 chr6 128563715 128564079 -53851163 + L1PB1 LINE L1 6500 6865 -2 268 304 112 16 chr6 128564383 128564508 -53850734 - L2 LINE L2 -2 3311 3175 448 332 63 37 chr6 128564852 128565120 -53850122 - L2 LINE L2 -3 3310 3036 306 279 28 101 chr6 128565091 128565270 -53849972 - L2 LINE L2 -3148 166 1 * 308 326 116 23 chr6 128566461 128566633 -53848609 - L2 LINE L2 -38 3234 3047 30 27 0 0 chr6 128568922 128568959 -53846283 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr6 128569238 128569284 -53845958 + AT_rich Low_complexity Low_complexity 1 46 0 3405 219 88 34 chr6 128569394 128571206 -53844036 - L1ME2 LINE L1 -6 6158 4140 236 325 13 13 chr6 128572313 128572390 -53842852 + MER5B DNA MER1_type 1 77 -101 1631 226 71 71 chr6 128572458 128573081 -53842161 - MLT1E2 LTR MaLR 0 626 4 183 42 0 0 chr6 128574329 128574353 -53840889 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2340 104 0 0 chr6 128576652 128576951 -53838291 - AluSg SINE Alu -11 299 1 434 200 114 14 chr6 128579217 128579357 -53835885 - Charlie5 DNA MER1_type -27 2585 2432 311 254 0 0 chr6 128579360 128579427 -53835815 - Charlie5 DNA MER1_type -2545 67 1 203 279 135 29 chr6 128579669 128579773 -53835469 + MIR SINE MIR 40 154 -108 637 281 129 9 chr6 128580060 128580284 -53834958 - MIR SINE MIR -10 252 2 618 225 7 7 chr6 128581151 128581302 -53833940 - L1MB2 LINE L1 -11 6160 6010 498 85 13 20 chr6 128581303 128581389 -53833853 - L1MB2 LINE L1 -271 5912 5832 386 239 86 0 chr6 128583989 128584106 -53831136 + MER103 DNA DNA 35 161 -5 1961 164 0 3 chr6 128584370 128584681 -53830561 + AluJb SINE Alu 1 310 -2 286 256 52 91 chr6 128585034 128585264 -53829978 - MLT1K LTR MaLR -180 408 188 211 319 11 32 chr6 128586138 128586232 -53829010 - MIR3 SINE MIR -3 205 114 726 159 91 17 chr6 128586868 128587044 -53828198 + MER53 DNA DNA 1 189 0 212 269 60 0 chr6 128587047 128587114 -53828128 - MIR SINE MIR -73 189 119 226 313 60 12 chr6 128587274 128587357 -53827885 - L2 LINE L2 -194 3078 2992 181 322 33 11 chr6 128587560 128587650 -53827592 - L2 LINE L2 -583 2731 2640 217 245 0 0 chr6 128587654 128587703 -53827539 - L2 LINE L2 -1 3312 3264 * 551 316 107 47 chr6 128587701 128588366 -53826876 - L2 LINE L2 -678 2636 1932 195 129 0 0 chr6 128588752 128588783 -53826459 + (CA)n Simple_repeat Simple_repeat 2 32 0 815 153 0 15 chr6 128588886 128589017 -53826225 + FLAM_C SINE Alu 1 129 -4 224 222 19 0 chr6 128589885 128589939 -53825303 + (CA)n Simple_repeat Simple_repeat 1 55 0 579 272 50 54 chr6 128589939 128590396 -53824846 - L1ME LINE L1 -438 5683 5185 721 292 25 19 chr6 128592717 128593032 -53822210 - L1ME3 LINE L1 -30 6132 5816 930 227 17 13 chr6 128593077 128593315 -53821927 + L1MB8 LINE L1 5940 6178 0 577 233 0 0 chr6 128593309 128593442 -53821800 - L1ME3 LINE L1 -373 5789 5657 * 23 33 0 0 chr6 128593828 128593858 -53821384 + AT_rich Low_complexity Low_complexity 1 30 0 510 302 66 10 chr6 128593942 128594230 -53821012 - L1ME4a LINE L1 -295 5826 5523 397 296 48 0 chr6 128594292 128594417 -53820825 + L3 LINE CR1 1440 1570 -7 24 0 0 0 chr6 128595698 128595722 -53819520 + AT_rich Low_complexity Low_complexity 1 24 0 352 289 39 26 chr6 128598516 128598672 -53816570 + MIR SINE MIR 48 205 -57 209 324 111 9 chr6 128599394 128599502 -53815740 - L2 LINE L2 -3 3310 3192 198 274 20 0 chr6 128599504 128599555 -53815687 + L2 LINE L2 3176 3227 -86 198 174 0 0 chr6 128600106 128600152 -53815090 + CT-rich Low_complexity Low_complexity 1 46 0 4831 132 11 4 chr6 128600202 128601015 -53814227 - L1PA16 LINE L1 -7 6159 5341 525 236 8 0 chr6 128601015 128601153 -53814089 - L1MA10 LINE L1 -30 6293 5996 1820 136 85 20 chr6 128601515 128601867 -53813375 + THE1C LTR MaLR 1 375 0 190 265 59 15 chr6 128602230 128602298 -53812944 + MIR3 SINE MIR 136 206 -2 715 258 138 5 chr6 128602525 128602742 -53812500 - MIR SINE MIR -10 252 7 497 324 41 18 chr6 128602729 128602948 -53812294 - MIR SINE MIR -38 224 1 * 307 269 174 28 chr6 128602958 128603348 -53811894 + L1ME4a LINE L1 5602 6048 -73 502 286 94 26 chr6 128604430 128604622 -53810620 - MIR SINE MIR -30 232 28 21 0 0 0 chr6 128605286 128605307 -53809935 + AT_rich Low_complexity Low_complexity 1 21 0 350 245 157 25 chr6 128606527 128606686 -53808556 - L1MC/D LINE L1 -2072 5736 5557 34 0 0 0 chr6 128606691 128606725 -53808517 + AT_rich Low_complexity Low_complexity 1 34 0 203 86 0 29 chr6 128606887 128606922 -53808320 + (TA)n Simple_repeat Simple_repeat 2 35 0 2167 119 76 15 chr6 128607184 128607527 -53807715 + THE1B LTR MaLR 1 364 0 11068 94 25 15 chr6 128607527 128609092 -53806150 + THE1B-int LTR MaLR 1 1580 0 2034 108 142 16 chr6 128609092 128609415 -53805827 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr6 128609516 128609547 -53805695 + AT_rich Low_complexity Low_complexity 1 31 0 1274 174 0 5 chr6 128609731 128609944 -53805298 - AluSg/x SINE Alu -4 308 97 276 122 0 0 chr6 128610044 128610085 -53805157 + MSTB1 LTR MaLR 392 432 0 2101 83 122 12 chr6 128610093 128610429 -53804813 - THE1C LTR MaLR -2 373 1 950 230 149 9 chr6 128611240 128611562 -53803680 + L1ME3A LINE L1 5781 6147 -23 353 214 219 28 chr6 128612915 128613130 -53802112 + MER112 DNA MER1_type 1 256 0 761 122 52 0 chr6 128613231 128613346 -53801896 - FLAM_A SINE Alu -12 121 1 2505 55 7 3 chr6 128613363 128613673 -53801569 - AluY SINE Alu 0 311 1 1843 179 0 7 chr6 128614645 128614936 -53800306 - AluJb SINE Alu -23 289 1 324 294 73 0 chr6 128616275 128616384 -53798858 + L1ME3 LINE L1 5965 6081 -81 2034 109 28 62 chr6 128616443 128616765 -53798477 + AluSx SINE Alu 1 311 -1 862 222 117 69 chr6 128616945 128617382 -53797860 + MER39 LTR ERV1 250 707 0 325 250 30 54 chr6 128617673 128617841 -53797401 + L1MC5 LINE L1 7773 7936 -25 197 270 139 70 chr6 128617841 128617956 -53797286 - MER5B DNA MER1_type -53 125 3 190 311 115 0 chr6 128617961 128618022 -53797220 - L2 LINE L2 -1 3271 3204 2249 116 0 0 chr6 128619065 128619367 -53795875 + AluSq SINE Alu 1 302 -11 245 170 0 0 chr6 128619367 128619420 -53795822 + L1MA1 LINE L1 6250 6302 0 1138 229 63 68 chr6 128619445 128619902 -53795340 + HAL1 LINE L1 957 1412 -1095 2012 163 10 52 chr6 128619902 128620307 -53794935 - MLT1B LTR MaLR 0 390 3 1138 229 63 68 chr6 128620307 128620468 -53794774 + HAL1 LINE L1 1412 1572 -935 1013 91 8 0 chr6 128620468 128620600 -53794642 + AluSg SINE Alu 1 133 -177 2044 117 0 0 chr6 128620600 128620873 -53794369 + AluSg SINE Alu 1 273 -37 370 191 91 18 chr6 128621143 128621253 -53793989 + MER58 DNA MER1_type 32 149 -2271 913 149 57 89 chr6 128621255 128621566 -53793676 - MER57A LTR ERV1 0 403 1 378 172 0 133 chr6 128621567 128621695 -53793547 - MER57A-int LTR ERV1 -2 7535 7425 250 157 181 12 chr6 128621695 128621778 -53793464 - LTR54B LTR ERV1 -121 377 281 1930 139 4 0 chr6 128621787 128622053 -53793189 - AluSx SINE Alu -45 267 1 312 150 33 0 chr6 128622081 128622141 -53793101 - LTR54B LTR ERV1 -211 287 226 759 106 63 21 chr6 128622181 128622323 -53792919 - LTR54B LTR ERV1 -350 148 1 547 189 25 16 chr6 128622344 128622466 -53792776 + MER58 DNA MER1_type 2294 2416 -4 753 269 54 22 chr6 128622469 128622692 -53792550 + MIR SINE MIR 15 244 -18 2290 111 3 0 chr6 128622904 128623211 -53792031 + AluSg SINE Alu 1 308 -2 2083 142 54 45 chr6 128623474 128623918 -53791324 - L1MB8 LINE L1 -9 6169 5722 1249 172 0 19 chr6 128624040 128624249 -53790993 + AluJo SINE Alu 82 286 -26 297 258 75 0 chr6 128625267 128625360 -53789882 - MER103 DNA DNA 0 166 67 416 117 0 0 chr6 128625381 128625441 -53789801 - Alu SINE Alu -13 298 239 521 147 55 9 chr6 128625919 128626028 -53789214 - MER103 DNA DNA -50 116 3 313 250 26 0 chr6 128626302 128626378 -53788864 - L1MC4 LINE L1 -1339 6703 6626 355 239 0 0 chr6 128626381 128626452 -53788790 - MIR SINE MIR -112 150 80 751 265 30 10 chr6 128627016 128627216 -53788026 + MIR SINE MIR 59 262 0 218 268 0 0 chr6 128627222 128627293 -53787949 + (TTA)n Simple_repeat Simple_repeat 3 73 0 939 155 7 7 chr6 128627723 128627871 -53787371 - AluJo SINE Alu -164 148 1 251 275 110 0 chr6 128627923 128628014 -53787228 - MIR SINE MIR -99 163 63 718 240 0 11 chr6 128628175 128628354 -53786888 - MLT1A2 LTR MaLR -25 349 173 517 81 0 40 chr6 128628354 128628453 -53786789 + (GA)n Simple_repeat Simple_repeat 2 96 0 745 161 15 0 chr6 128628477 128628614 -53786628 - MLT1A2 LTR MaLR -235 139 1 837 145 38 21 chr6 128628777 128628963 -53786279 + MER53 DNA DNA 1 189 0 1252 194 28 10 chr6 128629117 128629406 -53785836 - L1MB3 LINE L1 -7 6176 5883 251 188 18 170 chr6 128630145 128630257 -53784985 - MLT1J2 LTR MaLR -288 162 68 222 316 53 0 chr6 128630449 128630544 -53784698 + L2 LINE L2 3208 3307 -6 254 313 48 0 chr6 128630626 128630709 -53784533 + L2 LINE L2 2395 2481 -833 305 135 0 0 chr6 128630718 128630770 -53784472 - MLT1F LTR MaLR -1 541 490 427 107 13 0 chr6 128630775 128630850 -53784392 - MLT1F LTR MaLR -185 357 282 437 239 187 0 chr6 128630938 128631093 -53784149 - L2 LINE L2 0 3313 3130 1659 229 51 0 chr6 128631135 128631545 -53783697 - MLT1F LTR MaLR -111 431 1 382 343 60 15 chr6 128631549 128631750 -53783492 + L2 LINE L2 2479 2688 -626 1080 264 94 39 chr6 128631774 128632367 -53782875 - L2 LINE L2 0 3313 2681 416 447 58 26 chr6 128632391 128632766 -53782476 + L2 LINE L2 2716 3105 -208 1296 207 0 29 chr6 128632772 128633052 -53782190 - AluJb SINE Alu -1 311 40 243 216 257 0 chr6 128633074 128633148 -53782094 + L2 LINE L2 3221 3313 0 211 276 60 26 chr6 128633451 128633567 -53781675 - MIR SINE MIR -59 149 30 719 97 19 0 chr6 128634044 128634147 -53781095 - L1PA10 LINE L1 0 6168 6064 1026 161 5 0 chr6 128634147 128634340 -53780902 - L1P LINE L1 -991 5155 4962 530 246 22 22 chr6 128634887 128635021 -53780221 + MIR SINE MIR 20 153 -109 1144 188 112 45 chr6 128635092 128635448 -53779794 - L1ME1 LINE L1 -2 6164 5785 1385 226 48 6 chr6 128635829 128636166 -53779076 + MER52A LTR ERV1 1405 1755 0 917 281 35 50 chr6 128636166 128636767 -53778475 - L1ME LINE L1 -5094 976 385 398 312 47 12 chr6 128636753 128636923 -53778319 - L1ME LINE L1 -5575 495 320 * 488 125 0 0 chr6 128637773 128637853 -53777389 - L1M4 LINE L1 -2473 3673 3594 1456 245 117 43 chr6 128637853 128638698 -53776544 - L1MDa LINE L1 -3983 2557 1650 1736 239 119 15 chr6 128638705 128639174 -53776068 - LTR40a LTR ERVL -1 518 1 328 256 53 53 chr6 128639187 128639394 -53775848 - L1MDa LINE L1 -4904 1636 1430 2827 177 34 179 chr6 128639394 128640721 -53774521 + MER52C LTR ERV1 1 1413 -164 380 325 3 21 chr6 128640722 128640945 -53774297 + G-rich Low_complexity Low_complexity 1 218 0 236 172 0 35 chr6 128641280 128641338 -53773904 + (CTTAT)n Simple_repeat Simple_repeat 3 58 0 26 64 0 0 chr6 128641753 128641800 -53773442 + AT_rich Low_complexity Low_complexity 1 47 0 200 286 107 0 chr6 128645129 128645185 -53770057 - L2 LINE L2 -1 3271 3210 734 257 23 6 chr6 128645234 128645409 -53769833 - MER45A DNA AcHobo 0 178 1 225 185 15 31 chr6 128648305 128648370 -53766872 + (TA)n Simple_repeat Simple_repeat 2 65 0 22 0 0 0 chr6 128648373 128648395 -53766847 + AT_rich Low_complexity Low_complexity 1 22 0 401 250 17 42 chr6 128650364 128650484 -53764758 + L2 LINE L2 2368 2484 -830 760 274 100 17 chr6 128650494 128650855 -53764387 + L2 LINE L2 2764 3160 -153 2539 146 19 2 chr6 128652354 128652766 -53762476 - L1PA16 LINE L1 -4 6162 5744 7281 104 5 19 chr6 128652770 128653842 -53761400 + MER11C LTR ERVK 1 1057 -14 1058 160 14 16 chr6 128653859 128654090 -53761152 - L1PA16 LINE L1 -429 5737 5512 394 257 97 9 chr6 128655965 128656078 -53759164 + L2 LINE L2 3190 3312 -1 211 248 310 28 chr6 128656208 128656353 -53758889 + MIR SINE MIR 76 261 -1 373 268 67 55 chr6 128657897 128658061 -53757181 - MLT1H LTR MaLR 0 549 384 189 121 0 0 chr6 128658243 128658276 -53756966 + (CA)n Simple_repeat Simple_repeat 2 34 0 502 201 216 14 chr6 128658286 128658425 -53756817 - MLT1H LTR MaLR -343 206 40 241 257 79 33 chr6 128659586 128659718 -53755524 - MLT1H-int LTR MaLR -1445 135 2 271 254 51 51 chr6 128659720 128659838 -53755404 - MLT1H LTR MaLR 0 549 432 1129 260 18 11 chr6 128659923 128660200 -53755042 - MLT1H LTR MaLR -262 287 9 1644 163 35 35 chr6 128660569 128660907 -53754335 + MER44D DNA MER2_type 1 608 -1 907 200 0 6 chr6 128661872 128662047 -53753195 + MER104 DNA Tc2 4 177 -3 2207 120 7 0 chr6 128663583 128663891 -53751351 - AluSg SINE Alu 0 310 1 1926 166 3 0 chr6 128664519 128664821 -53750421 - AluSx SINE Alu -9 303 1 688 291 26 9 chr6 128664908 128665135 -53750107 + L1ME LINE L1 5529 5759 -362 1546 219 123 12 chr6 128665135 128665589 -53749653 + MLT1H LTR MaLR 1 547 -2 21 0 0 0 chr6 128665746 128665767 -53749475 + AT_rich Low_complexity Low_complexity 1 21 0 3017 170 11 56 chr6 128665825 128666466 -53748776 + LTR9 LTR ERV1 1 612 0 21 0 0 0 chr6 128668150 128668171 -53747071 + AT_rich Low_complexity Low_complexity 1 21 0 4382 170 44 17 chr6 128668420 128669362 -53745880 + L1MB8 LINE L1 5140 6113 -65 2217 107 10 0 chr6 128669362 128669661 -53745581 - AluSx SINE Alu -10 302 1 4382 170 44 17 chr6 128669661 128669726 -53745516 + L1MB8 LINE L1 6113 6175 -3 849 284 55 67 chr6 128669815 128670574 -53744668 + L1MDb LINE L1 75 693 -5847 4540 227 62 30 chr6 128670966 128672069 -53743173 + L1MDb LINE L1 984 2149 -4391 2197 141 0 9 chr6 128672069 128672409 -53742833 - MER1B DNA MER1_type 0 337 1 4540 227 62 30 chr6 128672409 128672813 -53742429 + L1MDb LINE L1 2149 2539 -4001 603 220 77 33 chr6 128672815 128672997 -53742245 + MLT1A1 LTR MaLR 4 193 -172 2974 238 59 39 chr6 128672999 128673996 -53741246 + L1MDb LINE L1 2927 3956 -2584 2207 96 0 0 chr6 128673996 128674301 -53740941 + AluSg SINE Alu 1 305 0 2974 238 59 39 chr6 128674301 128674518 -53740724 + L1MDb LINE L1 3956 4167 -2373 3197 267 60 30 chr6 128674537 128677079 -53738163 + L1M4 LINE L1 9 1898 -4072 631 238 7 0 chr6 128677084 128677227 -53738015 + L1MB1 LINE L1 1597 1740 -4644 12392 206 36 31 chr6 128677228 128679978 -53735264 + L1MB1 LINE L1 2327 5062 -1342 1709 172 11 7 chr6 128679978 128680263 -53734979 + AluJb SINE Alu 1 286 -26 219 36 0 0 chr6 128680272 128680300 -53734942 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 12392 206 36 31 chr6 128680300 128681582 -53733660 + L1MB1 LINE L1 5069 6402 -2 3301 267 49 15 chr6 128681610 128682778 -53732464 + L1M4 LINE L1 3564 4770 -1200 289 241 19 149 chr6 128683052 128683313 -53731929 - L1ME LINE L1 -5514 556 330 21 0 0 0 chr6 128683342 128683363 -53731879 + AT_rich Low_complexity Low_complexity 1 21 0 275 354 66 22 chr6 128686409 128686590 -53728652 + MIR3 SINE MIR 13 201 -7 339 311 54 36 chr6 128686742 128686909 -53728333 - MIR SINE MIR -70 192 23 272 229 12 0 chr6 128687337 128687420 -53727822 + (TA)n Simple_repeat Simple_repeat 2 85 0 232 189 0 0 chr6 128687420 128687473 -53727769 + L1MC4 LINE L1 6640 6692 -1350 1225 181 129 8 chr6 128687474 128687722 -53727520 - AluSg1 SINE Alu -31 278 1 183 42 0 0 chr6 128687723 128687747 -53727495 + (T)n Simple_repeat Simple_repeat 1 24 0 193 360 0 0 chr6 128688236 128688286 -53726956 + L2 LINE L2 3139 3188 -84 366 159 0 0 chr6 128689037 128689106 -53726136 + (TCCA)n Simple_repeat Simple_repeat 2 70 0 261 214 0 43 chr6 128689181 128689251 -53725991 + CT-rich Low_complexity Low_complexity 3 69 0 216 317 93 54 chr6 128689443 128689648 -53725594 - L2 LINE L2 -237 3035 2823 222 37 0 0 chr6 128690821 128690848 -53724394 + (TAA)n Simple_repeat Simple_repeat 2 28 0 696 267 68 0 chr6 128690901 128691092 -53724150 - MIR SINE MIR -54 208 5 210 290 14 0 chr6 128692387 128692456 -53722786 + CT-rich Low_complexity Low_complexity 3 72 0 21 0 0 0 chr6 128692538 128692559 -53722683 + AT_rich Low_complexity Low_complexity 1 21 0 247 130 0 0 chr6 128692591 128692637 -53722605 + LTR66 LTR ERVL 394 439 -171 236 222 0 0 chr6 128692652 128692715 -53722527 + L1MC4 LINE L1 6641 6703 -1339 228 193 159 11 chr6 128692746 128692834 -53722408 + L1MC4 LINE L1 6603 6703 -1339 263 298 53 44 chr6 128693532 128693646 -53721596 + MIR SINE MIR 16 130 -78 252 309 12 0 chr6 128693764 128693848 -53721394 - MLT1K LTR MaLR -502 86 2 1396 235 59 26 chr6 128693910 128694301 -53720941 + MER63C DNA MER1_type 2 405 -525 10986 127 39 11 chr6 128694321 128694544 -53720698 - Tigger1 DNA MER2_type 0 2418 2203 2252 98 7 0 chr6 128694544 128694840 -53720402 - AluSx SINE Alu -14 298 1 10986 127 39 11 chr6 128694840 128696392 -53718850 - Tigger1 DNA MER2_type -215 2203 593 5636 145 34 11 chr6 128696395 128697400 -53717842 - L1MA4 LINE L1 -9 6291 5264 3318 169 16 47 chr6 128697401 128698035 -53717207 - Tigger1 DNA MER2_type -1804 614 1 407 128 13 26 chr6 128698048 128698126 -53717116 + MER63C DNA MER1_type 437 513 -417 1055 229 92 56 chr6 128698127 128698464 -53716778 + MLT1A2 LTR MaLR 1 349 -25 194 91 11 91 chr6 128698586 128698674 -53716568 + (TA)n Simple_repeat Simple_repeat 2 82 0 536 252 16 8 chr6 128698680 128698807 -53716435 + MER58B DNA MER1_type 211 338 -3 1564 197 90 0 chr6 128698817 128699172 -53716070 + MER63C DNA MER1_type 543 929 -1 211 242 0 45 chr6 128699360 128699426 -53715816 - MER5A DNA MER1_type -3 186 113 1928 106 73 4 chr6 128699689 128699964 -53715278 - AluSc SINE Alu -15 294 1 289 263 0 13 chr6 128704638 128704714 -53710528 + MIR SINE MIR 124 198 -64 1773 182 31 8 chr6 128704764 128705121 -53710121 - MLT1A1 LTR MaLR 0 365 1 240 278 0 0 chr6 128705619 128705673 -53709569 + L2 LINE L2 3256 3309 -4 274 328 147 23 chr6 128705763 128706028 -53709214 - L2 LINE L2 -424 2890 2593 1778 158 47 99 chr6 128706192 128706685 -53708557 + MLT1C LTR MaLR 1 467 0 559 309 95 29 chr6 128707097 128707611 -53707631 - L1ME4a LINE L1 -248 5873 5326 2402 35 45 0 chr6 128707676 128707963 -53707279 + AluY SINE Alu 1 300 -11 182 325 60 8 chr6 128709029 128709146 -53706096 - L2 LINE L2 -1018 2296 2174 524 245 98 16 chr6 128709484 128709649 -53705593 - MIR SINE MIR -30 232 60 255 366 86 8 chr6 128709978 128710221 -53705021 - L2 LINE L2 -1890 1424 1163 204 281 193 0 chr6 128710262 128710319 -53704923 - L2 LINE L2 -4 3268 3201 335 226 85 55 chr6 128712841 128713005 -53702237 - L1MEc LINE L1 -3668 2547 2379 2240 228 51 76 chr6 128713031 128714117 -53701125 - L1MDa LINE L1 -5340 1200 15 261 273 51 23 chr6 128714121 128714320 -53700922 - L1MEc LINE L1 -3905 2329 2144 670 306 125 32 chr6 128714644 128715388 -53699854 - L1MEc LINE L1 -4974 1231 419 1483 180 56 3 chr6 128716849 128717205 -53698037 - MER3 DNA MER1_type 0 2618 2244 336 204 146 19 chr6 128717222 128717325 -53697917 - MER3 DNA MER1_type -87 122 54 1117 260 98 92 chr6 128719458 128719750 -53695492 - L2 LINE L2 -714 2600 2302 2424 67 0 19 chr6 128719750 128720065 -53695177 + AluY SINE Alu 1 309 -2 1117 260 98 92 chr6 128720065 128720334 -53694908 - L2 LINE L2 -1012 2302 2036 242 89 44 0 chr6 128722295 128722340 -53692902 + A-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr6 128723581 128723602 -53691640 + AT_rich Low_complexity Low_complexity 1 21 0 251 292 133 17 chr6 128724120 128724240 -53691002 + MIR3 SINE MIR 13 146 -62 235 256 66 58 chr6 128724401 128724522 -53690720 - MIR SINE MIR -112 150 29 27 29 0 0 chr6 128725023 128725057 -53690185 + AT_rich Low_complexity Low_complexity 1 34 0 2404 56 0 13 chr6 128725176 128725478 -53689764 - AluY SINE Alu -13 298 1 1798 159 10 83 chr6 128725616 128726024 -53689218 + L1MA7 LINE L1 5736 6113 -178 23 0 0 0 chr6 128726157 128726180 -53689062 + AT_rich Low_complexity Low_complexity 1 23 0 228 390 9 9 chr6 128727376 128727481 -53687761 - MIR SINE MIR -118 144 40 458 303 48 87 chr6 128728404 128728843 -53686399 + L1ME2 LINE L1 348 769 -5603 3185 263 59 49 chr6 128728988 128729915 -53685327 + L1ME2 LINE L1 780 1696 -4686 4719 102 22 0 chr6 128729915 128730590 -53684652 - L1PA16 LINE L1 -9 6157 5468 3185 263 59 49 chr6 128730590 128732281 -53682961 + L1ME2 LINE L1 1696 3459 -2923 1288 144 90 6 chr6 128732288 128732592 -53682650 - Tigger4(Zombi) DNA MER2_type 0 2731 1 5067 229 76 34 chr6 128732642 128732858 -53682384 + L1ME2 LINE L1 3525 3731 -2669 2254 166 25 28 chr6 128732858 128733293 -53681949 + Tigger2a DNA MER2_type 1 434 0 5067 229 76 34 chr6 128733293 128735827 -53679415 + L1ME2 LINE L1 3731 6381 -19 2472 72 0 3 chr6 128736361 128736667 -53678575 + AluY SINE Alu 2 306 -5 195 42 0 0 chr6 128738577 128738601 -53676641 + (TAA)n Simple_repeat Simple_repeat 3 26 0 503 262 119 48 chr6 128738697 128738907 -53676335 - MIR SINE MIR -1 261 37 366 123 0 0 chr6 128739245 128739302 -53675940 + (TAA)n Simple_repeat Simple_repeat 3 59 0 356 303 139 43 chr6 128739319 128739527 -53675715 - MIR SINE MIR -24 238 11 182 309 12 60 chr6 128739540 128739624 -53675618 - MIR SINE MIR -110 152 73 1841 157 136 18 chr6 128739628 128740011 -53675231 - MSTA LTR MaLR 0 428 1 716 327 110 16 chr6 128741350 128741723 -53673519 + LTR16B LTR ERVL 57 464 0 704 194 97 0 chr6 128741772 128741927 -53673315 - MER58C DNA MER1_type -1 214 45 225 315 0 22 chr6 128742294 128742383 -53672859 + GA-rich Low_complexity Low_complexity 3 89 0 235 369 36 66 chr6 128743773 128744166 -53671076 + L2 LINE L2 2877 3257 -15 369 286 40 88 chr6 128744442 128744771 -53670471 + L1ME LINE L1 4991 5303 -843 446 272 138 16 chr6 128744810 128745056 -53670186 + L1ME LINE L1 5385 5660 -461 621 298 83 1 chr6 128745607 128745959 -53669283 - LTR33 LTR ERVL -114 407 1 293 164 30 0 chr6 128747401 128747468 -53667774 + GA-rich Low_complexity Low_complexity 3 71 0 293 275 113 21 chr6 128748138 128748378 -53666864 - L1ME LINE L1 -303 5818 5557 2258 95 0 7 chr6 128748397 128748691 -53666551 + AluSx SINE Alu 1 292 -20 340 316 29 15 chr6 128750114 128750250 -53664992 - MIR3 SINE MIR -68 140 3 201 299 98 37 chr6 128750318 128750458 -53664784 + MIR SINE MIR 16 164 -98 319 270 36 27 chr6 128750564 128750675 -53664567 + MLT1I LTR MaLR 58 169 -240 1968 108 3 17 chr6 128751102 128751420 -53663822 - AluY SINE Alu 0 314 1 1118 188 0 5 chr6 128751718 128751910 -53663332 - MLT1B LTR MaLR -3 387 197 332 93 0 19 chr6 128751912 128751966 -53663276 + (TG)n Simple_repeat Simple_repeat 1 53 0 328 194 0 42 chr6 128752108 128752180 -53663062 - MLT1B LTR MaLR -302 72 4 784 278 93 56 chr6 128752596 128752920 -53662322 + MLT1I LTR MaLR 59 394 -15 434 155 0 0 chr6 128753195 128753279 -53661963 - AluS SINE Alu -1 311 228 * 776 137 17 0 chr6 128753272 128753389 -53661853 - AluSq/x SINE Alu -171 142 24 230 318 113 13 chr6 128755427 128755578 -53659664 - MIR3 SINE MIR -5 203 38 378 288 18 78 chr6 128758623 128758842 -53656400 + MER102b DNA MER1_type 132 337 -4 212 358 63 11 chr6 128760179 128760274 -53654968 + L2 LINE L2 3156 3255 -17 297 225 34 22 chr6 128760919 128761008 -53654234 + MER112 DNA MER1_type 144 233 -27 320 85 0 21 chr6 128761215 128761262 -53653980 + MLT1E2 LTR MaLR 1 46 -608 1822 228 71 7 chr6 128761422 128761861 -53653381 + MLT1E2 LTR MaLR 160 626 0 265 306 41 50 chr6 128762219 128762340 -53652902 - L2 LINE L2 0 3313 3194 378 86 49 55 chr6 128762445 128762608 -53652634 + (TATAA)n Simple_repeat Simple_repeat 5 166 0 402 125 67 0 chr6 128762612 128762716 -53652526 + (TA)n Simple_repeat Simple_repeat 1 111 0 280 52 104 26 chr6 128762741 128762818 -53652424 + (TATAA)n Simple_repeat Simple_repeat 5 87 0 896 187 190 10 chr6 128763050 128763339 -53651903 - L1ME3A LINE L1 -238 5932 5592 750 265 16 127 chr6 128763376 128763746 -53651496 + MLT1E LTR MaLR 9 337 -256 6265 45 3 0 chr6 128763994 128764752 -53650490 + L1PA6 LINE L1 5367 6126 -28 824 210 73 44 chr6 128764752 128765000 -53650242 + pTR5 LTR ERV1 743 997 -1441 1317 87 0 26 chr6 128765006 128765201 -53650041 + pTR5 LTR ERV1 1836 2025 -413 247 276 31 10 chr6 128765201 128765299 -53649943 + LTR30 LTR ERV1 544 643 -79 677 109 0 0 chr6 128765301 128765393 -53649849 + pTR5 LTR ERV1 303 394 -2044 198 0 0 0 chr6 128765414 128765436 -53649806 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2286 99 10 0 chr6 128765564 128765867 -53649375 - AluSg SINE Alu -4 306 1 343 264 80 48 chr6 128765874 128765999 -53649243 - L1ME LINE L1 -4937 1133 1005 256 183 77 82 chr6 128766022 128766198 -53649044 - L1ME LINE L1 -5110 960 792 2353 60 0 3 chr6 128766833 128767142 -53648100 + AluY SINE Alu 3 310 0 26 30 0 0 chr6 128767690 128767723 -53647519 + AT_rich Low_complexity Low_complexity 1 33 0 270 50 0 0 chr6 128769173 128769213 -53646029 - L1PA11 LINE L1 -2 6172 6133 268 286 240 52 chr6 128769774 128769928 -53645314 + MIR SINE MIR 3 185 -77 23 33 0 0 chr6 128770088 128770118 -53645124 + AT_rich Low_complexity Low_complexity 1 30 0 632 200 180 0 chr6 128770566 128770716 -53644526 - MER5A DNA MER1_type 0 189 13 26 0 0 0 chr6 128772489 128772515 -53642727 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 128773283 128773306 -53641936 + (T)n Simple_repeat Simple_repeat 1 23 0 234 174 0 0 chr6 128774215 128774261 -53640981 + (TG)n Simple_repeat Simple_repeat 1 46 0 369 174 0 0 chr6 128774261 128774330 -53640912 + (CA)n Simple_repeat Simple_repeat 2 70 0 943 321 139 6 chr6 128774852 128775325 -53639917 - L2 LINE L2 -365 2949 2414 206 297 125 61 chr6 128778054 128778091 -53637151 + L2 LINE L2 1621 1654 -1660 849 207 121 0 chr6 128778091 128778289 -53636953 + MER58A DNA MER1_type 2 223 -1 206 297 125 61 chr6 128778289 128778578 -53636664 + L2 LINE L2 1654 1968 -1346 763 170 64 94 chr6 128778625 128778998 -53636244 - MER31A LTR ERV1 0 485 1 251 319 164 34 chr6 128779060 128779267 -53635975 + L2 LINE L2 2561 2794 -520 203 310 198 32 chr6 128779683 128780118 -53635124 - L2 LINE L2 -1604 1710 1204 185 260 20 0 chr6 128781100 128781150 -53634092 + L2 LINE L2 3263 3313 0 1827 151 32 4 chr6 128781755 128782034 -53633208 - AluSx SINE Alu -25 287 1 375 193 169 0 chr6 128782167 128782250 -53632992 - MIR SINE MIR -70 192 96 490 238 34 48 chr6 128782317 128782464 -53632778 - MIR SINE MIR -98 164 20 301 222 0 0 chr6 128784987 128785050 -53630192 + MER103 DNA DNA 22 84 -82 183 289 0 0 chr6 128787285 128787337 -53627905 - L2 LINE L2 -215 3057 3006 198 326 49 76 chr6 128787586 128787770 -53627472 + L2 LINE L2 1008 1186 -2128 778 333 98 57 chr6 128787811 128788294 -53626948 + L2 LINE L2 1276 1738 -1576 2193 81 0 3 chr6 128788294 128788635 -53626607 + AluY SINE Alu 1 340 0 778 333 98 57 chr6 128788635 128788689 -53626553 + L2 LINE L2 1738 1788 -1526 2169 139 116 10 chr6 128788689 128789076 -53626166 + MSTA LTR MaLR 1 428 0 778 333 98 57 chr6 128789076 128789377 -53625865 + L2 LINE L2 1788 2075 -1239 1481 206 45 14 chr6 128789377 128789731 -53625511 + MLT1A1 LTR MaLR 1 365 0 778 333 98 57 chr6 128789731 128790040 -53625202 + L2 LINE L2 2075 2473 -841 4071 93 7 2 chr6 128790041 128790928 -53624314 - L1P4 LINE L1 -368 5800 4909 23 0 0 0 chr6 128791160 128791183 -53624059 + AT_rich Low_complexity Low_complexity 1 23 0 8626 132 98 3 chr6 128791243 128792708 -53622534 - L1P4 LINE L1 -1235 4911 3300 2173 128 3 0 chr6 128792708 128793012 -53622230 - AluSq SINE Alu -8 305 1 8626 132 98 3 chr6 128793012 128793042 -53622200 - L1P4 LINE L1 -2846 3300 3274 309 295 104 103 chr6 128793047 128793085 -53622157 + L2 LINE L2 2726 2762 -510 1216 185 35 11 chr6 128793085 128793371 -53621871 - L1MB7 LINE L1 -2 6182 5890 309 295 104 103 chr6 128793371 128793875 -53621367 + L2 LINE L2 2762 3271 -1 186 143 18 143 chr6 128794028 128794084 -53621158 + MIR SINE MIR 99 147 -115 2060 138 0 31 chr6 128794181 128794500 -53620742 + AluSg SINE Alu 1 309 -1 250 291 38 13 chr6 128795290 128795369 -53619873 - MIR3 SINE MIR -122 86 6 614 124 38 0 chr6 128796051 128796156 -53619086 + L1MA4 LINE L1 6178 6286 -14 572 256 34 34 chr6 128796326 128796564 -53618678 + Charlie2 DNA MER1_type 2622 2859 -3 2811 185 108 19 chr6 128796633 128797391 -53617851 - Charlie2a DNA MER1_type -237 2625 1800 1004 196 63 16 chr6 128797382 128797637 -53617605 - Charlie2a DNA MER1_type -1138 1724 1458 * 343 350 55 43 chr6 128798588 128798842 -53616400 + L3 LINE CR1 1319 1575 -2 348 83 0 0 chr6 128799535 128799583 -53615659 + (TG)n Simple_repeat Simple_repeat 2 49 0 1916 184 14 8 chr6 128800912 128801271 -53613971 + MLT1A1 LTR MaLR 5 365 0 268 338 125 6 chr6 128801389 128801549 -53613693 - MIR3 SINE MIR -9 199 21 205 393 96 11 chr6 128801798 128801976 -53613266 - MIR SINE MIR -50 212 20 1751 209 167 8 chr6 128802202 128802705 -53612537 - MER63 DNA MER1_type -3 1057 475 817 165 0 15 chr6 128802833 128802966 -53612276 + FLAM_C SINE Alu 1 131 -2 320 200 76 76 chr6 128803383 128803528 -53611714 + L1ME4a LINE L1 5950 6094 -27 239 263 0 25 chr6 128804837 128804917 -53610325 + CT-rich Low_complexity Low_complexity 2 79 0 262 123 35 0 chr6 128806935 128806992 -53608250 + GA-rich Low_complexity Low_complexity 2 60 0 1906 127 25 0 chr6 128807348 128807651 -53607591 + AluSx SINE Alu 1 310 0 26 0 0 0 chr6 128807882 128807908 -53607334 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr6 128808834 128808869 -53606373 + (CA)n Simple_repeat Simple_repeat 2 36 0 1872 157 46 100 chr6 128808870 128809328 -53605914 + Tigger2a DNA MER2_type 2 434 0 1848 161 36 12 chr6 128809332 128809662 -53605580 - MLT2C1 LTR ERVL -59 338 1 642 349 56 20 chr6 128809919 128810485 -53604757 - ERVL LTR ERVL -201 5284 4715 3556 317 86 44 chr6 128810541 128810715 -53604527 - ERVL LTR ERVL -1067 4587 4422 1880 218 66 7 chr6 128810715 128811156 -53604086 - MLT1C LTR MaLR 0 467 1 3556 317 86 44 chr6 128811156 128811380 -53603862 - ERVL LTR ERVL -1232 4422 4209 1887 202 25 0 chr6 128811380 128811736 -53603506 + MLT1A1 LTR MaLR 1 365 0 3556 317 86 44 chr6 128811736 128811914 -53603328 - ERVL LTR ERVL -1445 4209 4040 2165 133 38 19 chr6 128811914 128812282 -53602960 + THE1C LTR MaLR 1 375 0 3556 317 86 44 chr6 128812282 128814129 -53601113 - ERVL LTR ERVL -1614 4040 2040 356 327 74 54 chr6 128814425 128815095 -53600147 - ERVL LTR ERVL -3972 1682 1031 769 240 161 57 chr6 128815915 128816369 -53598873 - LTR33 LTR ERVL -7 514 14 521 291 73 0 chr6 128817696 128817875 -53597367 + MIR SINE MIR 58 249 -13 364 291 35 50 chr6 128819028 128819169 -53596073 + MIR3 SINE MIR 5 143 -65 297 0 0 0 chr6 128819837 128819870 -53595372 + (CA)n Simple_repeat Simple_repeat 2 34 0 699 115 31 62 chr6 128819903 128820033 -53595209 - FRAM SINE Alu -9 167 42 209 208 0 0 chr6 128820899 128820947 -53594295 + T-rich Low_complexity Low_complexity 1 48 0 14267 193 69 14 chr6 128820956 128825086 -53590156 - L1PB3 LINE L1 -32 6838 2338 183 42 0 0 chr6 128825086 128825110 -53590132 + (TTG)n Simple_repeat Simple_repeat 1 24 0 14267 193 69 14 chr6 128825110 128827580 -53587662 - L1PB3 LINE L1 -4532 2338 6 536 181 0 0 chr6 128827597 128827680 -53587562 - Charlie3 DNA MER1_type -2624 86 4 * 741 219 178 53 chr6 128827680 128827911 -53587331 - MLT2B1 LTR ERVL -88 432 171 1056 185 130 63 chr6 128828336 128828606 -53586636 + Tigger7 DNA MER2_type 1 288 -2199 426 310 152 27 chr6 128828968 128829561 -53585681 - L1M4 LINE L1 -1116 5030 4364 403 294 119 31 chr6 128829839 128830125 -53585117 - L1M4 LINE L1 -2106 4040 3730 213 242 15 0 chr6 128830154 128830220 -53585022 + (TA)n Simple_repeat Simple_repeat 1 67 0 201 157 43 71 chr6 128830627 128830697 -53584545 + (CATTT)n Simple_repeat Simple_repeat 3 70 0 22 35 0 0 chr6 128830719 128830748 -53584494 + AT_rich Low_complexity Low_complexity 1 29 0 398 195 138 38 chr6 128831073 128831232 -53584010 + MER104 DNA Tc2 1 175 -5 2713 90 0 0 chr6 128831447 128831802 -53583440 + THE1A LTR MaLR 1 355 0 196 342 63 0 chr6 128832134 128832213 -53583029 - L2 LINE L2 -40 3232 3149 21 36 0 0 chr6 128832392 128832420 -53582822 + AT_rich Low_complexity Low_complexity 1 28 0 1304 315 76 28 chr6 128832558 128833449 -53581793 + L2 LINE L2 2383 3310 -3 217 289 53 26 chr6 128834154 128834230 -53581012 - L2 LINE L2 -47 3266 3189 257 344 76 69 chr6 128834274 128834536 -53580706 - L2 LINE L2 -42 3230 2967 264 30 0 0 chr6 128836752 128836785 -53578457 + (CA)n Simple_repeat Simple_repeat 1 33 0 279 0 0 0 chr6 128837315 128837346 -53577896 + (TG)n Simple_repeat Simple_repeat 1 31 0 2593 221 51 41 chr6 128839659 128840422 -53574820 - L1ME1 LINE L1 -19 6147 5377 979 196 31 0 chr6 128840513 128840742 -53574500 - L1ME1 LINE L1 -776 5370 5135 303 366 57 22 chr6 128840785 128841012 -53574230 + L2 LINE L2 2403 2637 -677 229 104 0 42 chr6 128842277 128842325 -53572917 + (TA)n Simple_repeat Simple_repeat 1 46 0 226 163 54 76 chr6 128842330 128842422 -53572820 + L1MC4 LINE L1 6614 6703 -1339 262 145 48 12 chr6 128842427 128842510 -53572732 + (TA)n Simple_repeat Simple_repeat 1 86 0 201 253 76 13 chr6 128842515 128842594 -53572648 - MIR SINE MIR -58 204 121 279 314 46 69 chr6 128842734 128842909 -53572333 - MER5A DNA MER1_type 0 189 19 384 352 0 0 chr6 128843075 128843200 -53572042 + MIR SINE MIR 38 162 -100 226 164 36 18 chr6 128845439 128845494 -53569748 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 629 231 8 0 chr6 128845495 128845616 -53569626 - FLAM_C SINE Alu -19 124 3 45 0 0 0 chr6 128845702 128845747 -53569495 + AT_rich Low_complexity Low_complexity 1 45 0 1527 149 20 0 chr6 128845747 128845995 -53569247 - L1PA16 LINE L1 -20 6849 6597 9876 37 3 0 chr6 128845995 128847963 -53567279 - L1PA5 LINE L1 0 6154 4183 2809 38 0 0 chr6 128847964 128848304 -53566938 + L1PA5 LINE L1 3850 4189 -1957 * 10133 208 25 79 chr6 128848289 128852068 -53563174 - L1PA16 LINE L1 -245 6624 3205 252 143 0 0 chr6 128852068 128852110 -53563132 - MADE1 DNA Mariner -38 42 1 10133 208 25 79 chr6 128852110 128853250 -53561992 - L1PA16 LINE L1 -3664 3205 2005 23 24 0 24 chr6 128853250 128853271 -53561971 + AT_rich Low_complexity Low_complexity 1 21 -19 6769 58 12 0 chr6 128853271 128853937 -53561305 - L1PA7 LINE L1 -3 6151 5494 369 0 0 0 chr6 128853937 128853978 -53561264 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2275 75 0 7 chr6 128853978 128854259 -53560983 - AluY SINE Alu -30 281 3 6769 58 12 0 chr6 128854259 128854694 -53560548 - L1PA7 LINE L1 -659 5495 5059 23 24 0 24 chr6 128854694 128854713 -53560529 + AT_rich Low_complexity Low_complexity 21 40 0 11542 88 9 14 chr6 128854713 128856370 -53558872 + L1P LINE L1 2983 4631 -1515 731 256 76 49 chr6 128856373 128856889 -53558353 - L1PA16 LINE L1 -4836 2013 1427 1140 267 0 43 chr6 128857352 128857655 -53557587 - L1PA16 LINE L1 -6116 733 444 290 331 16 33 chr6 128857678 128857799 -53557443 - L1M2 LINE L1 -6065 784 666 1230 303 58 15 chr6 128858353 128858832 -53556410 - L1M2 LINE L1 -6348 501 2 267 309 66 116 chr6 128859003 128859262 -53555980 - MIR SINE MIR -15 247 2 22 0 0 0 chr6 128859668 128859690 -53555552 + AT_rich Low_complexity Low_complexity 1 22 0 1904 106 22 0 chr6 128859790 128860064 -53555178 - L1PA11 LINE L1 0 6174 5895 206 355 36 36 chr6 128861362 128861472 -53553770 + MIR SINE MIR 1 110 -152 38 39 0 0 chr6 128861601 128861653 -53553589 + AT_rich Low_complexity Low_complexity 1 52 0 252 356 98 36 chr6 128862075 128862269 -53552973 - L2 LINE L2 -186 3086 2881 47 44 0 0 chr6 128862269 128862337 -53552905 + AT_rich Low_complexity Low_complexity 1 68 0 3175 125 34 2 chr6 128864047 128864544 -53550698 - LTR10D LTR ERV1 0 513 1 21366 169 12 10 chr6 128864564 128868227 -53547015 - HERVI LTR ERV1 -16 7769 4099 5463 222 17 3 chr6 128868311 128869369 -53545873 - HERVI LTR ERV1 -3873 3912 2840 1348 290 29 44 chr6 128869514 128870065 -53545177 - HERVI LTR ERV1 -6647 1138 596 959 264 44 66 chr6 128870099 128870731 -53544511 - HERVI LTR ERV1 -7088 697 10 3421 113 18 4 chr6 128870739 128871245 -53543997 - LTR10D LTR ERV1 0 513 1 22 0 0 0 chr6 128873094 128873116 -53542126 + AT_rich Low_complexity Low_complexity 1 22 0 338 304 137 6 chr6 128873524 128873685 -53541557 - MIR SINE MIR -3 259 78 1329 272 52 64 chr6 128873886 128874743 -53540499 - L2 LINE L2 -66 3247 2356 2699 259 99 43 chr6 128875347 128877622 -53537620 - L1ME3 LINE L1 -254 5908 3507 25 31 0 0 chr6 128877928 128877960 -53537282 + AT_rich Low_complexity Low_complexity 1 32 0 3688 127 11 33 chr6 128878204 128878832 -53536410 + L1PA15 LINE L1 5548 6161 -4 281 81 0 0 chr6 128878832 128878869 -53536373 - L1P4 LINE L1 -693 5473 5437 240 179 0 0 chr6 128879007 128879046 -53536196 + tRNA-Met-e tRNA tRNA 6 44 -31 198 0 0 0 chr6 128879637 128879659 -53535583 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 2172 97 3 13 chr6 128880985 128881285 -53533957 - AluSg SINE Alu -13 297 1 1902 125 46 35 chr6 128881375 128881743 -53533499 - THE1C LTR MaLR 0 375 4 271 151 23 116 chr6 128881999 128882085 -53533157 - MLT1K LTR MaLR -62 526 449 1994 103 0 0 chr6 128882111 128882374 -53532868 - AluSx SINE Alu -15 297 35 1091 222 21 103 chr6 128882424 128882803 -53532439 + MLT1A1 LTR MaLR 11 358 -7 26 50 0 0 chr6 128883007 128883047 -53532195 + AT_rich Low_complexity Low_complexity 1 40 0 1572 141 4 0 chr6 128883849 128884083 -53531159 + AluSx SINE Alu 1 235 -77 234 0 0 0 chr6 128884602 128884628 -53530614 + (TG)n Simple_repeat Simple_repeat 2 27 0 4947 88 25 12 chr6 128886851 128887530 -53527712 + LTR12 LTR ERV1 1 688 0 1954 124 0 7 chr6 128888270 128888576 -53526666 + AluSg SINE Alu 1 304 0 255 389 83 19 chr6 128889867 128890024 -53525218 + L2 LINE L2 3096 3262 -10 586 271 21 0 chr6 128890112 128890256 -53524986 - MIR SINE MIR -26 236 90 208 336 56 19 chr6 128890333 128890440 -53524802 - MIR SINE MIR -77 131 21 197 135 81 0 chr6 128890434 128890471 -53524771 + MIR SINE MIR 123 162 -100 * 4145 149 31 60 chr6 128890861 128891678 -53523564 - MER54B LTR ERVL 0 793 1 265 255 48 37 chr6 128893022 128893234 -53522008 + L1ME4a LINE L1 5755 5969 -152 213 339 152 9 chr6 128893475 128893587 -53521655 - MIR3 SINE MIR -34 174 47 1794 219 32 11 chr6 128895149 128895591 -53519651 - L1 LINE L1 -1132 5014 4564 856 195 23 28 chr6 128895588 128895803 -53519439 + L1 LINE L1 5042 5255 -891 * 3802 145 37 8 chr6 128895804 128896460 -53518782 + L1PA16 LINE L1 5478 6152 -14 22 56 0 0 chr6 128897227 128897263 -53517979 + AT_rich Low_complexity Low_complexity 1 36 0 564 84 0 0 chr6 128897317 128897400 -53517842 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 1049 81 35 6 chr6 128897411 128897584 -53517658 + CT-rich Low_complexity Low_complexity 1 178 0 297 0 0 0 chr6 128897590 128897623 -53517619 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 8487 187 18 2 chr6 128897723 128899406 -53515836 - L1 LINE L1 -1223 4923 3213 217 137 21 105 chr6 128900077 128900172 -53515070 + T-rich Low_complexity Low_complexity 3 89 0 263 307 67 0 chr6 128900515 128900590 -53514652 - MLT1K LTR MaLR -352 236 157 6023 193 12 11 chr6 128900853 128901970 -53513272 + L1M4 LINE L1 572 1689 -5876 327 235 12 25 chr6 128902256 128902337 -53512905 - ERVL LTR ERVL -4808 956 877 192 40 0 0 chr6 128902385 128902410 -53512832 + (T)n Simple_repeat Simple_repeat 1 25 0 251 252 146 32 chr6 128903110 128903233 -53512009 - MLT2E LTR ERVL -67 561 425 23 0 0 0 chr6 128904306 128904329 -53510913 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr6 128904349 128904376 -53510866 + AT_rich Low_complexity Low_complexity 1 27 0 3296 106 45 4 chr6 128905281 128905772 -53509470 + MER9 LTR ERVK 1 511 0 1081 259 83 14 chr6 128906358 128906849 -53508393 + L1M4 LINE L1 1947 2471 -4992 255 306 0 0 chr6 128907170 128907242 -53508000 - L1M4c LINE L1 -5109 1275 1204 186 43 0 0 chr6 128907289 128907312 -53507930 + (GA)n Simple_repeat Simple_repeat 2 24 0 671 254 127 31 chr6 128907323 128907583 -53507659 + L1M4 LINE L1 2498 2782 -4785 397 202 50 20 chr6 128907587 128907686 -53507556 + L1M4 LINE L1 5565 5666 -518 1016 164 28 23 chr6 128907786 128908000 -53507242 + THE1C LTR MaLR 159 373 -2 21 0 0 0 chr6 128908237 128908258 -53506984 + AT_rich Low_complexity Low_complexity 1 21 0 12885 86 4 9 chr6 128909045 128910864 -53504378 - L1P LINE L1 -3354 2792 984 961 125 24 0 chr6 128910966 128911134 -53504108 + CT-rich Low_complexity Low_complexity 2 173 0 477 0 0 0 chr6 128911136 128911189 -53504053 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 1578 191 0 7 chr6 128911192 128911475 -53503767 - AluJb SINE Alu -31 281 1 247 193 289 12 chr6 128913916 128913999 -53501243 + MIR SINE MIR 47 152 -110 356 277 10 103 chr6 128914714 128914909 -53500333 - MER5B DNA MER1_type -1 177 1 327 65 0 0 chr6 128915004 128915050 -53500192 + (CA)n Simple_repeat Simple_repeat 2 47 0 201 98 219 0 chr6 128916027 128916068 -53499174 - L2 LINE L2 -2 3311 3262 274 202 236 22 chr6 128916885 128916974 -53498268 - MIR SINE MIR -4 258 151 35 41 0 0 chr6 128917163 128917212 -53498030 + AT_rich Low_complexity Low_complexity 1 49 0 2045 124 0 10 chr6 128917750 128918064 -53497178 - AluSx SINE Alu -1 311 1 3500 152 27 16 chr6 128918132 128918769 -53496473 - MER73 LTR ERVL 0 644 1 612 299 64 73 chr6 128919818 128920242 -53495000 + HAL1 LINE L1 1059 1478 -1029 533 356 80 30 chr6 128920287 128920747 -53494495 + L1M4 LINE L1 3685 4167 -1979 288 118 20 0 chr6 128920766 128920817 -53494425 + L1MC2 LINE L1 6268 6319 -25 2137 104 0 0 chr6 128920829 128921109 -53494133 + AluSx SINE Alu 31 310 -2 620 274 19 59 chr6 128921153 128921579 -53493663 - L1ME LINE L1 -592 5570 5158 326 89 18 0 chr6 128921584 128921640 -53493602 - MER41A LTR ERV1 -88 466 410 906 286 53 44 chr6 128921646 128922414 -53492828 - L1ME LINE L1 -979 5167 4393 25 51 0 0 chr6 128922638 128922677 -53492565 + AT_rich Low_complexity Low_complexity 1 39 0 185 86 57 0 chr6 128923009 128923044 -53492198 + T-rich Low_complexity Low_complexity 3 39 0 1020 183 112 0 chr6 128923046 128923297 -53491945 - L1MA4 LINE L1 -7 6293 6015 32 0 0 0 chr6 128923420 128923452 -53491790 + AT_rich Low_complexity Low_complexity 1 32 0 1370 335 155 37 chr6 128924777 128925661 -53489581 + L2 LINE L2 979 2084 -1230 2450 156 19 12 chr6 128925661 128926092 -53489150 - Tigger2a DNA MER2_type 0 434 1 1370 335 155 37 chr6 128926092 128926585 -53488657 + L2 LINE L2 2084 2518 -796 242 331 270 11 chr6 128926684 128926962 -53488280 + L2 LINE L2 2512 2861 -453 223 401 0 8 chr6 128926989 128927121 -53488121 + L2 LINE L2 2935 3065 -248 1412 42 0 0 chr6 128927121 128927289 -53487953 + AluY SINE Alu 127 294 -17 332 319 76 38 chr6 128927335 128927520 -53487722 + L2 LINE L2 3118 3309 -4 184 276 138 0 chr6 128927565 128927623 -53487619 - MIR SINE MIR -108 154 89 1848 176 20 61 chr6 128928834 128929183 -53486059 + MLT2C1 LTR ERVL 4 335 -62 246 32 0 0 chr6 128929183 128929214 -53486028 + (TG)n Simple_repeat Simple_repeat 2 32 0 1848 176 20 61 chr6 128929214 128929273 -53485969 + MLT2C1 LTR ERVL 335 395 -2 2181 102 0 0 chr6 128929403 128929697 -53485545 - AluSg1 SINE Alu -15 294 1 26 0 0 0 chr6 128930956 128930982 -53484260 + AT_rich Low_complexity Low_complexity 1 26 0 231 36 0 0 chr6 128932193 128932221 -53483021 + (TG)n Simple_repeat Simple_repeat 1 28 0 1486 88 0 0 chr6 128932455 128932648 -53482594 + AluSg SINE Alu 2 194 -116 198 0 0 0 chr6 128932678 128932700 -53482542 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2188 23 0 0 chr6 128932700 128932956 -53482286 - L1PA4 LINE L1 -5 6150 5895 188 254 32 32 chr6 128932975 128933038 -53482204 + L2 LINE L2 3251 3313 0 209 267 89 59 chr6 128933167 128933268 -53481974 - MIR3 SINE MIR -3 205 102 196 219 98 98 chr6 128933360 128933442 -53481800 - L2 LINE L2 -10 3262 3181 21 0 0 0 chr6 128933941 128933962 -53481280 + AT_rich Low_complexity Low_complexity 1 21 0 511 285 57 13 chr6 128934175 128934333 -53480909 + MER117 DNA MER1_type 1 165 -32 1288 207 49 34 chr6 128936063 128936508 -53478734 - L1MEc LINE L1 -4095 2301 1850 785 226 10 10 chr6 128936503 128936698 -53478544 - L1MD3 LINE L1 -12 7983 7789 * 1441 266 91 39 chr6 128936695 128937541 -53477701 - L1MEc LINE L1 -4544 1852 963 660 350 52 34 chr6 128937547 128938162 -53477080 - L1MEc LINE L1 -5483 913 288 693 290 110 42 chr6 128938360 128938787 -53476455 - L2 LINE L2 -549 2765 2310 3519 152 36 17 chr6 128938874 128939759 -53475483 - L1MB7 LINE L1 -7 6177 5188 6367 125 36 2 chr6 128939784 128941018 -53474224 - L1PB1 LINE L1 0 6867 5578 10735 109 116 50 chr6 128941050 128942139 -53473103 - L1PB1 LINE L1 -3913 2950 1934 1914 124 34 7 chr6 128942139 128942430 -53472812 - AluSc SINE Alu -10 299 1 10735 109 116 50 chr6 128942430 128944104 -53471138 - L1PB1 LINE L1 -4929 1934 1 360 0 0 0 chr6 128944578 128944618 -53470624 + (CA)n Simple_repeat Simple_repeat 2 41 0 250 285 127 28 chr6 128945309 128945437 -53469805 - MIR SINE MIR -63 145 28 21 0 0 0 chr6 128947476 128947497 -53467745 + AT_rich Low_complexity Low_complexity 1 21 0 234 269 32 11 chr6 128948513 128948606 -53466636 + (TA)n Simple_repeat Simple_repeat 1 95 0 228 253 0 0 chr6 128949210 128949285 -53465957 + (TG)n Simple_repeat Simple_repeat 2 76 0 810 336 39 10 chr6 128950067 128950379 -53464863 - LTR16C LTR ERVL -2 489 169 200 324 50 90 chr6 128951243 128951465 -53463777 + L2 LINE L2 2256 2468 -846 5223 168 59 20 chr6 128951684 128953330 -53461912 - L1MA9 LINE L1 -13 6299 4583 1654 189 19 13 chr6 128953357 128953732 -53461510 + L1M2 LINE L1 5254 5630 -661 2546 229 69 8 chr6 128953761 128954746 -53460496 - L1M2 LINE L1 -4238 2869 1830 1809 246 130 46 chr6 128954799 128955496 -53459746 - L1M2 LINE L1 -6253 777 17 1642 208 36 23 chr6 128955496 128955681 -53459561 - MSTD LTR MaLR 0 396 215 180 0 0 0 chr6 128955681 128955701 -53459541 + (GA)n Simple_repeat Simple_repeat 1 20 0 1642 208 36 23 chr6 128955701 128955904 -53459338 - MSTD LTR MaLR -181 215 3 1809 246 130 46 chr6 128955904 128955923 -53459319 - L1M2 LINE L1 -7013 17 1 362 209 41 23 chr6 128957567 128957739 -53457503 + (TA)n Simple_repeat Simple_repeat 1 175 0 491 291 35 124 chr6 128957815 128958097 -53457145 + MIR SINE MIR 5 261 -1 554 387 52 34 chr6 128958109 128958767 -53456475 + L2 LINE L2 2601 3269 -3 1856 129 16 44 chr6 128959330 128959648 -53455594 - AluSx SINE Alu -3 309 1 308 372 102 40 chr6 128960722 128961244 -53453998 - L2 LINE L2 -58 3255 2707 460 260 0 0 chr6 128961501 128961601 -53453641 + MER81 DNA DNA 1 100 -14 186 331 96 52 chr6 128961645 128961781 -53453461 - L3 LINE CR1 -68 1509 1368 210 290 73 106 chr6 128961843 128962088 -53453154 - L3 LINE CR1 -155 1422 1186 27 29 0 0 chr6 128962251 128962285 -53452957 + AT_rich Low_complexity Low_complexity 1 34 0 1625 197 10 3 chr6 128962573 128962872 -53452370 + AluJo SINE Alu 11 311 -1 21 0 0 0 chr6 128963123 128963144 -53452098 + AT_rich Low_complexity Low_complexity 1 21 0 183 289 18 105 chr6 128963847 128963961 -53451281 + MER5A DNA MER1_type 81 184 -5 182 259 125 62 chr6 128965035 128965147 -53450095 + L2 LINE L2 1850 1968 -1346 292 351 53 39 chr6 128965248 128965456 -53449786 - MIR SINE MIR -42 220 10 184 191 48 48 chr6 128965680 128965743 -53449499 + MER5C DNA MER1_type 226 288 -36 21 0 0 0 chr6 128966831 128966852 -53448390 + AT_rich Low_complexity Low_complexity 1 21 0 3842 91 42 21 chr6 128967917 128968489 -53446753 + L1PA13 LINE L1 5579 6162 -1 303 274 26 0 chr6 128968899 128969012 -53446230 - L1MC4 LINE L1 -1 8041 7926 275 192 14 0 chr6 128969036 128969109 -53446133 + CT-rich Low_complexity Low_complexity 3 76 0 541 269 21 0 chr6 128969327 128969472 -53445770 - L1MC4 LINE L1 -388 7654 7507 1866 78 8 4 chr6 128969486 128969741 -53445501 + L1PA10 LINE L1 5902 6157 -11 2415 69 0 3 chr6 128969776 128970081 -53445161 + AluY SINE Alu 1 304 -7 23 0 0 0 chr6 128970423 128970446 -53444796 + AT_rich Low_complexity Low_complexity 1 23 0 1597 164 19 26 chr6 128970770 128971081 -53444161 + AluJo SINE Alu 1 309 -3 185 222 56 37 chr6 128971167 128971221 -53444021 + MIR SINE MIR 154 208 -54 339 227 38 45 chr6 128971646 128971859 -53443383 + Charlie7 DNA MER1_type 47 2607 -5 468 299 67 48 chr6 128972860 128973174 -53442068 - L2 LINE L2 -2 3311 2992 2003 139 49 25 chr6 128974400 128974766 -53440476 + THE1C LTR MaLR 1 375 0 4583 147 59 22 chr6 128976721 128977592 -53437650 + MER4D LTR ERV1 1 903 0 1088 275 46 64 chr6 128978788 128979563 -53435679 + L1ME LINE L1 499 1299 -4962 1822 173 3 0 chr6 128979563 128979858 -53435384 + AluSx SINE Alu 1 296 -16 1088 275 46 64 chr6 128979858 128980198 -53435044 + L1ME LINE L1 1299 1644 -4617 230 167 24 0 chr6 128980200 128980242 -53435000 + L1ME1 LINE L1 5887 5929 -249 554 253 129 10 chr6 128980343 128980537 -53434705 + L1ME1 LINE L1 5931 6147 -19 216 163 41 0 chr6 128980612 128980661 -53434581 + (TA)n Simple_repeat Simple_repeat 2 52 0 786 313 20 4 chr6 128980840 128981089 -53434153 + MIR SINE MIR 7 259 -3 21 0 0 0 chr6 128981171 128981192 -53434050 + AT_rich Low_complexity Low_complexity 1 21 0 378 91 0 0 chr6 128981371 128981426 -53433816 + (TC)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chr6 128981811 128981834 -53433408 + AT_rich Low_complexity Low_complexity 1 23 0 221 350 0 14 chr6 128982181 128982324 -53432918 + GA-rich Low_complexity Low_complexity 2 142 0 227 344 87 50 chr6 128985948 128986166 -53429076 + L2 LINE L2 2553 2778 -536 316 277 80 9 chr6 128986181 128986293 -53428949 + MER57B LTR ERV1 1 120 -314 1864 174 3 7 chr6 128988559 128988869 -53426373 + MLT2B2 LTR ERVL 1 309 -206 185 246 62 15 chr6 128989898 128989963 -53425279 - L2 LINE L2 0 3313 3246 400 298 83 22 chr6 128990478 128990659 -53424583 - MIR SINE MIR 0 262 71 621 303 67 15 chr6 128991051 128991246 -53423996 + MIR3 SINE MIR 4 208 0 218 362 9 60 chr6 128993932 128994048 -53421194 + L2 LINE L2 1699 1808 -1506 765 200 6 0 chr6 128994068 128994224 -53421018 - L1ME2 LINE L1 -4 6158 5997 1954 256 158 48 chr6 128994359 128994991 -53420251 - L1MC4 LINE L1 -113 7695 7134 2257 146 83 8 chr6 128994991 128995389 -53419853 - MSTA LTR MaLR 0 428 1 1954 256 158 48 chr6 128995389 128995982 -53419260 - L1MC4 LINE L1 -674 7134 6444 1710 218 62 6 chr6 128996055 128996408 -53418834 + MSTD LTR MaLR 24 396 0 1943 151 53 20 chr6 128996994 128997352 -53417890 + MLT1B LTR MaLR 21 390 0 286 340 76 21 chr6 128997396 128997540 -53417702 + L2 LINE L2 1849 2000 -1314 326 356 92 22 chr6 128998240 128998557 -53416685 + L2 LINE L2 2301 2639 -675 2181 115 0 20 chr6 129000707 129001011 -53414231 - AluSq SINE Alu -15 298 1 1092 204 61 111 chr6 129001737 129002115 -53413127 + MLT1A1 LTR MaLR 1 359 -6 7378 212 50 33 chr6 129002121 129003827 -53411415 + MLT1A1-int LTR MaLR 1 1735 0 263 191 63 0 chr6 129003829 129003883 -53411359 + MLT1A1 LTR MaLR 3 60 -336 394 145 159 0 chr6 129003883 129003952 -53411290 + MADE1 DNA Mariner 1 80 0 * 1054 216 15 108 chr6 129003952 129004285 -53410957 + MLT1A1 LTR MaLR 65 365 0 2117 134 3 0 chr6 129004369 129004667 -53410575 + AluSq SINE Alu 1 299 -14 194 33 67 0 chr6 129004670 129004700 -53410542 + A-rich Low_complexity Low_complexity 2 33 0 225 264 9 28 chr6 129005753 129005859 -53409383 + GA-rich Low_complexity Low_complexity 1 104 0 2514 77 0 0 chr6 129005998 129006309 -53408933 - AluY SINE Alu 0 311 1 862 269 5 0 chr6 129006459 129006667 -53408575 - MLT1B LTR MaLR 0 390 182 289 89 0 36 chr6 129006691 129006747 -53408495 + (TCC)n Simple_repeat Simple_repeat 2 55 0 477 190 152 51 chr6 129006747 129006905 -53408337 - MLT1A2 LTR MaLR -216 174 1 270 0 0 0 chr6 129008373 129008403 -53406839 + (TG)n Simple_repeat Simple_repeat 2 31 0 1418 144 17 81 chr6 129008405 129008703 -53406539 - AluJo SINE Alu -29 283 5 25 51 0 0 chr6 129010209 129010248 -53404994 + AT_rich Low_complexity Low_complexity 1 39 0 297 289 50 25 chr6 129011051 129011172 -53404070 + MLT1H LTR MaLR 424 547 -2 1932 123 47 0 chr6 129011804 129012081 -53403161 + AluSx SINE Alu 1 290 -22 22 35 0 0 chr6 129012642 129012671 -53402571 + AT_rich Low_complexity Low_complexity 1 29 0 4668 155 23 1 chr6 129014407 129015196 -53400046 - L1PA16 LINE L1 -20 6146 5341 214 350 10 10 chr6 129015717 129015817 -53399425 + L3 LINE CR1 241 340 -1237 655 286 241 28 chr6 129016117 129016751 -53398491 + L3 LINE CR1 798 1566 -11 257 326 86 99 chr6 129017785 129018190 -53397052 + L2 LINE L2 2869 3268 -4 342 312 201 16 chr6 129018279 129018468 -53396774 + L1MC4 LINE L1 7809 8032 -10 180 219 0 0 chr6 129018624 129018665 -53396577 + (TG)n Simple_repeat Simple_repeat 1 41 0 7264 101 8 20 chr6 129018795 129019879 -53395363 + MER11C LTR ERVK 1 1071 0 312 237 186 0 chr6 129020275 129020393 -53394849 + Charlie8 DNA MER1_type 382 521 -1896 535 280 72 59 chr6 129020538 129020774 -53394468 - MIR SINE MIR -19 243 5 1658 109 5 0 chr6 129020830 129021051 -53394191 - AluSc SINE Alu -87 222 1 9554 122 21 4 chr6 129022436 129023887 -53391355 + Tigger1 DNA MER2_type 2 1477 -941 1258 79 6 0 chr6 129023888 129024052 -53391190 + AluY SINE Alu 144 308 -3 1356 132 18 18 chr6 129024054 129024281 -53390961 + Tigger1 DNA MER2_type 1473 1699 -719 4518 138 15 3 chr6 129024322 129025052 -53390190 + Tigger1 DNA MER2_type 1680 2418 0 215 303 90 48 chr6 129025720 129025865 -53389377 + MIR SINE MIR 2 152 -110 2404 74 0 13 chr6 129026653 129026962 -53388280 - AluY SINE Alu -6 305 1 248 373 55 0 chr6 129028008 129028118 -53387124 - L2 LINE L2 -73 3199 3084 337 242 0 0 chr6 129028299 129028365 -53386877 + L2 LINE L2 3203 3268 -4 284 385 165 0 chr6 129028799 129029017 -53386225 - MIR SINE MIR -3 259 6 207 0 0 0 chr6 129029944 129029967 -53385275 + (T)n Simple_repeat Simple_repeat 1 23 0 338 311 25 25 chr6 129030363 129030377 -53384865 - L2 LINE L2 0 3272 3259 183 42 0 0 chr6 129030377 129030401 -53384841 + (CAGT)n Simple_repeat Simple_repeat 3 26 0 338 311 25 25 chr6 129030401 129030505 -53384737 - L2 LINE L2 -12 3260 3154 313 313 18 36 chr6 129030510 129030622 -53384620 + MIR3 SINE MIR 66 175 -33 274 396 9 0 chr6 129031018 129031124 -53384118 - MIR SINE MIR -153 109 3 255 293 13 0 chr6 129031166 129031241 -53384001 - MER81 DNA DNA -2 112 37 288 128 0 0 chr6 129031272 129031319 -53383923 + MADE1 DNA Mariner 1 47 -33 23 0 0 0 chr6 129031671 129031694 -53383548 + AT_rich Low_complexity Low_complexity 1 23 0 1063 152 0 0 chr6 129031943 129032108 -53383134 - L1PA16 LINE L1 -11 6155 5991 8100 228 49 19 chr6 129032120 129035815 -53379427 - L1 LINE L1 -1989 4045 250 320 295 38 0 chr6 129036670 129036775 -53378467 - L1 LINE L1 -5846 109 1 291 192 27 14 chr6 129036780 129036853 -53378389 + L2 LINE L2 2153 2226 -1088 4553 79 21 12 chr6 129036853 129037970 -53377272 - MER11A LTR ERVK 0 1266 1 1555 281 132 33 chr6 129037970 129038820 -53376422 + L2 LINE L2 2221 3136 -177 7189 248 70 40 chr6 129038954 129041185 -53374057 - MER4B-int LTR ERV1 -58 4133 1838 5111 147 38 7 chr6 129041187 129042114 -53373128 - Tigger3b DNA MER2_type 0 1231 276 546 238 0 0 chr6 129042115 129042216 -53373026 - Tigger3b DNA MER2_type -1130 101 1 661 212 0 106 chr6 129042218 129042397 -53372845 - MER4B-int LTR ERV1 -2356 1835 1676 265 277 60 0 chr6 129042525 129042608 -53372634 - MER4B-int LTR ERV1 -2553 1638 1551 273 198 198 0 chr6 129042668 129042754 -53372488 - MER4B-int LTR ERV1 -2408 4350 4248 749 261 11 71 chr6 129042774 129043057 -53372185 - MER4B-int LTR ERV1 -2812 1379 1114 809 176 39 22 chr6 129043857 129044039 -53371203 - L1MA9 LINE L1 0 6312 6128 228 325 78 13 chr6 129044564 129044641 -53370601 + MER5A DNA MER1_type 7 88 -101 273 228 109 0 chr6 129044901 129045002 -53370240 - HsTC2 DNA Tc2 -48 1850 1739 988 206 61 58 chr6 129045018 129045329 -53369913 - HsTC2 DNA Tc2 -1061 837 526 2285 105 0 0 chr6 129045400 129045704 -53369538 - AluSg SINE Alu 0 310 7 1157 260 14 11 chr6 129045727 129046004 -53369238 + MLT1H LTR MaLR 29 306 -243 769 236 103 30 chr6 129046007 129046278 -53368964 - HsTC2 DNA Tc2 -1528 370 80 32 57 0 0 chr6 129046575 129046628 -53368614 + AT_rich Low_complexity Low_complexity 1 53 0 24 0 0 0 chr6 129046714 129046738 -53368504 + AT_rich Low_complexity Low_complexity 1 24 0 288 328 0 0 chr6 129047289 129047423 -53367819 - L1ME LINE L1 -312 5809 5676 233 252 126 0 chr6 129047695 129047814 -53367428 - L1ME LINE L1 -747 5399 5266 1517 172 4 4 chr6 129048455 129048734 -53366508 - L1MB5 LINE L1 -243 5931 5653 23 33 0 0 chr6 129048877 129048907 -53366335 + AT_rich Low_complexity Low_complexity 1 30 0 2053 107 0 26 chr6 129049233 129049543 -53365699 - AluSc SINE Alu -7 302 1 9371 203 94 29 chr6 129049638 129050073 -53365169 - L1P4 LINE L1 -413 6456 6051 234 0 0 0 chr6 129050073 129050099 -53365143 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9371 203 94 29 chr6 129050099 129054050 -53361192 - L1P4 LINE L1 -818 6051 1664 1229 197 36 51 chr6 129054051 129054325 -53360917 - AluJb SINE Alu -31 281 12 3993 186 50 0 chr6 129054328 129055473 -53359769 - L1P4 LINE L1 -5189 1660 5 2171 101 7 7 chr6 129055612 129055920 -53359322 - AluSc SINE Alu -1 308 1 301 271 83 58 chr6 129055971 129056333 -53358909 - HAL1 LINE L1 -918 1589 1219 670 308 34 50 chr6 129056341 129056685 -53358557 + Charlie8 DNA MER1_type 2 326 -2091 249 33 0 0 chr6 129056835 129056865 -53358377 + (CA)n Simple_repeat Simple_repeat 2 31 0 1523 271 113 22 chr6 129056889 129057237 -53358005 + Charlie8 DNA MER1_type 567 882 -1535 2063 113 3 0 chr6 129057237 129057569 -53357673 - AluSg SINE Alu 0 333 1 1523 271 113 22 chr6 129057569 129057865 -53357377 + Charlie8 DNA MER1_type 882 1271 -1146 581 288 60 102 chr6 129057905 129058493 -53356749 + L2 LINE L2 2764 3313 0 602 263 26 57 chr6 129058596 129058824 -53356418 + Charlie8 DNA MER1_type 1408 1628 -789 6805 137 53 5 chr6 129058832 129059997 -53355245 - Tigger3b DNA MER2_type 0 1231 11 732 280 186 13 chr6 129059999 129060396 -53354846 + Charlie8 DNA MER1_type 1631 2096 -321 189 0 0 0 chr6 129060607 129060628 -53354614 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 201 139 47 0 chr6 129060812 129060855 -53354387 + T-rich Low_complexity Low_complexity 2 46 0 300 27 0 0 chr6 129061655 129061692 -53353550 + (CA)n Simple_repeat Simple_repeat 2 38 0 1661 52 0 0 chr6 129061743 129061953 -53353289 - L1PA5 LINE L1 0 6154 5945 31 0 0 0 chr6 129063028 129063059 -53352183 + AT_rich Low_complexity Low_complexity 1 31 0 687 178 92 12 chr6 129063168 129063331 -53351911 - MER96B DNA MER1_type? -239 178 3 1544 178 30 78 chr6 129063692 129064063 -53351179 - MLT1A2 LTR MaLR -4 370 18 2731 7 0 0 chr6 129064416 129064718 -53350524 - AluYa5 SINE Alu -9 302 1 4568 136 44 60 chr6 129065608 129066503 -53348739 - L1MC1 LINE L1 -9 6324 5445 29 70 0 0 chr6 129066788 129066845 -53348397 + AT_rich Low_complexity Low_complexity 1 57 0 29 0 0 0 chr6 129067648 129067677 -53347565 + AT_rich Low_complexity Low_complexity 1 29 0 2324 243 24 61 chr6 129069257 129069960 -53345282 + L1M3b LINE L1 4 680 -5601 * 5086 174 15 26 chr6 129069940 129071439 -53343803 + L1MA7 LINE L1 4784 6269 -22 341 323 59 19 chr6 129071606 129071895 -53343347 + L1ME4a LINE L1 5595 5904 -217 1624 230 88 69 chr6 129074458 129075036 -53340206 - MLT1E3 LTR MaLR -35 589 1 285 371 0 9 chr6 129075701 129075817 -53339425 - L3b LINE CR1 -342 1241 1127 36 53 0 0 chr6 129078024 129078081 -53337161 + AT_rich Low_complexity Low_complexity 1 57 0 4077 136 22 68 chr6 129078196 129079018 -53336224 + LTR1 LTR ERV1 1 784 -1 1323 190 95 0 chr6 129079085 129079369 -53335873 - AluJo SINE Alu -1 311 1 1494 170 0 54 chr6 129079403 129079720 -53335522 + AluJb SINE Alu 9 308 -4 3952 196 35 11 chr6 129079726 129080520 -53334722 + L1MC3 LINE L1 6757 7569 -216 3476 265 78 25 chr6 129080648 129081822 -53333420 + L1ME1 LINE L1 3633 4957 -1209 2165 128 0 0 chr6 129081822 129082127 -53333115 + AluY SINE Alu 2 306 -5 3476 265 78 25 chr6 129082127 129082987 -53332255 + L1ME1 LINE L1 4957 5770 -396 253 268 47 31 chr6 129083022 129083149 -53332093 - L1M4 LINE L1 -929 5217 5089 947 248 13 5 chr6 129083158 129083409 -53331833 + L1ME1 LINE L1 5784 6037 -129 6073 189 16 14 chr6 129083507 129084900 -53330342 + L1MC1 LINE L1 4922 6327 -6 412 275 16 48 chr6 129084925 129085114 -53330128 + L1MEc LINE L1 1874 2056 -4340 186 189 0 0 chr6 129085279 129085316 -53329926 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 5798 85 18 21 chr6 129085412 129086263 -53328979 + L1PA13 LINE L1 5315 6162 -1 324 209 38 48 chr6 129086244 129086349 -53328893 + L1M4 LINE L1 5188 5291 -855 * 1743 210 37 87 chr6 129086449 129086988 -53328254 - MLT2B1 LTR ERVL -6 514 3 462 311 19 50 chr6 129087003 129087229 -53328013 - MLT1I LTR MaLR -121 288 95 452 307 76 61 chr6 129087855 129088249 -53326993 + MLT1J LTR MaLR 111 510 -1 381 298 160 32 chr6 129090329 129090517 -53324725 + MIR SINE MIR 7 218 -44 22 70 0 0 chr6 129091053 129091096 -53324146 + AT_rich Low_complexity Low_complexity 1 43 0 408 227 68 53 chr6 129092124 129092256 -53322986 + L2 LINE L2 2160 2293 -1021 513 84 0 0 chr6 129092854 129092925 -53322317 + (TA)n Simple_repeat Simple_repeat 1 71 0 2001 168 21 0 chr6 129092956 129093296 -53321946 + MER7A DNA MER2_type 1 345 -1 215 231 0 19 chr6 129093297 129093349 -53321893 + (TATG)n Simple_repeat Simple_repeat 4 54 0 4886 200 41 55 chr6 129093350 129094629 -53320613 - L1MB8 LINE L1 -9 6980 5747 2035 128 6 6 chr6 129094629 129094941 -53320301 - AluSx SINE Alu 0 312 1 4886 200 41 55 chr6 129094941 129096002 -53319240 - L1MB8 LINE L1 -1242 5747 4673 816 276 36 49 chr6 129096022 129096277 -53318965 - L1MB8 LINE L1 -3677 3280 3023 2055 108 17 3 chr6 129096277 129096574 -53318668 - AluSx SINE Alu -11 301 1 816 276 36 49 chr6 129096574 129096808 -53318434 - L1MB8 LINE L1 -3934 3023 2833 2261 64 3 0 chr6 129096808 129097115 -53318127 - AluY SINE Alu 0 308 1 816 276 36 49 chr6 129097115 129097337 -53317905 - L1MB8 LINE L1 -4124 2833 2610 257 275 0 2 chr6 129097344 129097411 -53317831 + MER77 LTR ERV1 491 599 -6 1963 147 53 26 chr6 129097412 129097792 -53317450 - MLT1B LTR MaLR 0 390 1 3523 219 41 1 chr6 129097961 129098643 -53316599 - L1MB8 LINE L1 -5767 1092 384 3728 183 29 38 chr6 129098679 129099465 -53315777 + LTR1 LTR ERV1 7 785 0 1302 227 18 82 chr6 129099466 129099854 -53315388 - L1MB8 LINE L1 -6484 375 13 217 310 0 26 chr6 129100294 129100410 -53314832 + T-rich Low_complexity Low_complexity 2 114 0 1582 246 52 19 chr6 129100474 129100725 -53314517 + MLT1D LTR MaLR 20 294 -211 2036 129 3 3 chr6 129100725 129101035 -53314207 + AluSq SINE Alu 1 310 -3 1582 246 52 19 chr6 129101035 129101246 -53313996 + MLT1D LTR MaLR 294 497 -8 2253 119 0 0 chr6 129101770 129102080 -53313162 - AluSg SINE Alu 0 310 1 39 38 0 0 chr6 129102228 129102281 -53312961 + AT_rich Low_complexity Low_complexity 1 53 0 273 269 42 25 chr6 129102281 129102400 -53312842 - MIR SINE MIR -18 244 124 21 36 0 0 chr6 129102779 129102807 -53312435 + AT_rich Low_complexity Low_complexity 1 28 0 324 0 0 0 chr6 129103035 129103071 -53312171 + (TG)n Simple_repeat Simple_repeat 1 36 0 278 282 147 29 chr6 129103932 129104102 -53311140 + L2 LINE L2 3124 3313 0 1445 158 55 0 chr6 129104449 129104721 -53310521 - L1MA5 LINE L1 -216 6084 5798 542 227 8 0 chr6 129104711 129104830 -53310412 + L1MB5 LINE L1 5797 5916 -258 * 3200 209 35 15 chr6 129104894 129105618 -53309624 + L1MB5 LINE L1 5428 6165 -9 31 44 0 0 chr6 129105619 129105664 -53309578 + AT_rich Low_complexity Low_complexity 1 45 0 359 359 43 9 chr6 129107127 129107429 -53307813 + L1MC/D LINE L1 5189 5498 -749 1954 131 3 17 chr6 129107615 129107912 -53307330 - AluSq SINE Alu -18 295 3 250 256 22 22 chr6 129107940 129108030 -53307212 + L1MC/D LINE L1 5743 5832 -1976 28 29 0 0 chr6 129111114 129111149 -53304093 + AT_rich Low_complexity Low_complexity 1 35 0 193 347 91 8 chr6 129111471 129111592 -53303650 + L2 LINE L2 2890 3020 -252 252 0 0 0 chr6 129111713 129111741 -53303501 + (T)n Simple_repeat Simple_repeat 1 28 0 305 309 49 24 chr6 129112348 129112471 -53302771 - L2 LINE L2 -7 3306 3181 336 208 179 9 chr6 129113588 129113694 -53301548 - MIR SINE MIR -68 194 71 220 368 0 0 chr6 129113965 129114052 -53301190 - L2 LINE L2 -190 3082 2996 195 129 0 0 chr6 129114247 129114278 -53300964 + (T)n Simple_repeat Simple_repeat 1 31 0 613 281 92 13 chr6 129114430 129114668 -53300574 + MIR SINE MIR 3 259 -3 204 339 91 0 chr6 129115260 129115381 -53299861 + MIR SINE MIR 75 206 -56 333 333 31 49 chr6 129116508 129116832 -53298410 - L1MC/D LINE L1 -2199 5609 5292 701 264 119 34 chr6 129117461 129117765 -53297477 - MER57A LTR ERV1 -6 397 63 1870 161 27 14 chr6 129117765 129118132 -53297110 + THE1C LTR MaLR 4 375 0 701 264 119 34 chr6 129118132 129118201 -53297041 - MER57A LTR ERV1 -340 63 1 193 238 24 0 chr6 129119001 129119043 -53296199 + MER5B DNA MER1_type 1 43 -135 552 258 55 31 chr6 129119064 129119351 -53295891 + L1ME2 LINE L1 5711 6049 -115 2537 256 85 18 chr6 129119659 129120920 -53294322 - L1ME2 LINE L1 -10 6154 4814 1126 197 30 0 chr6 129121021 129121255 -53293987 - L1 LINE L1 -1913 4233 3993 2122 136 91 95 chr6 129121260 129121451 -53293791 + L1PA16 LINE L1 5254 5444 -722 2351 56 7 13 chr6 129121451 129121756 -53293486 + AluY SINE Alu 1 303 -8 2122 136 91 95 chr6 129121756 129122101 -53293141 + L1PA16 LINE L1 5444 5788 -378 272 189 9 57 chr6 129122102 129122208 -53293034 + (TA)n Simple_repeat Simple_repeat 2 102 0 2149 159 27 5 chr6 129122209 129122580 -53292662 + L1PA16 LINE L1 5777 6155 -11 2601 263 102 48 chr6 129122616 129124327 -53290915 - L1ME2 LINE L1 -1543 4603 2801 274 211 0 0 chr6 129124338 129124395 -53290847 - MLT1D LTR MaLR -9 496 440 983 245 29 37 chr6 129124405 129124650 -53290592 - MLT1-int LTR MaLR -154 1217 975 364 295 23 0 chr6 129124845 129124974 -53290268 - L1ME2 LINE L1 -3417 2729 2598 6442 126 38 3 chr6 129125025 129126422 -53288820 - L1MA1 LINE L1 -6 6296 4854 11846 196 62 48 chr6 129126423 129128137 -53287105 + L1MA8 LINE L1 2928 4618 -3092 7385 34 6 1 chr6 129128137 129129203 -53286039 + L1PA5 LINE L1 5077 6146 -8 11846 196 62 48 chr6 129129203 129129560 -53285682 + L1MA8 LINE L1 4618 4969 -2741 1955 157 14 6 chr6 129129560 129129910 -53285332 - THE1A LTR MaLR 0 355 3 10787 113 13 4 chr6 129129912 129131477 -53283765 - THE1A-int LTR MaLR 0 1580 1 2020 141 14 20 chr6 129131477 129131832 -53283410 - THE1A LTR MaLR 0 355 3 11846 196 62 48 chr6 129131832 129134451 -53280791 + L1MA8 LINE L1 4968 7698 -12 234 258 70 23 chr6 129134471 129134599 -53280643 + HAL1 LINE L1 2075 2208 -299 226 224 95 86 chr6 129134731 129134847 -53280395 + HAL1 LINE L1 2372 2488 -19 230 157 0 20 chr6 129134877 129134888 -53280354 + (TA)n Simple_repeat Simple_repeat 2 12 -39 1637 172 157 5 chr6 129134888 129135265 -53279977 + Tigger2a DNA MER2_type 1 434 0 230 157 0 20 chr6 129135265 129135304 -53279938 + (TA)n Simple_repeat Simple_repeat 12 51 0 4898 138 25 3 chr6 129135386 129136244 -53278998 - L1PA10 LINE L1 -964 5182 4307 6169 81 31 2 chr6 129136244 129137211 -53278031 + L1PA10 LINE L1 5164 6158 -10 315 161 0 0 chr6 129138443 129138499 -53276743 + (TG)n Simple_repeat Simple_repeat 1 56 0 234 116 47 0 chr6 129138499 129138542 -53276700 + L1MC4 LINE L1 6659 6703 -1339 230 214 48 24 chr6 129138515 129138599 -53276643 - L1MC4 LINE L1 -1340 6702 6617 * 1052 247 38 79 chr6 129139035 129139428 -53275814 - MLT1E3 LTR MaLR -120 504 128 2155 149 61 17 chr6 129139837 129139876 -53275366 - MSTA LTR MaLR 0 428 392 1879 122 35 10 chr6 129139876 129140164 -53275078 + AluSq SINE Alu 1 295 -18 2155 149 61 17 chr6 129140164 129140534 -53274708 - MSTA LTR MaLR -36 392 1 442 184 0 132 chr6 129140934 129141141 -53274101 + MLT1D LTR MaLR 55 235 -270 566 154 39 0 chr6 129141141 129141245 -53273997 + L1 LINE L1 26 133 -7432 * 1169 209 5 0 chr6 129141242 129141453 -53273789 + L1 LINE L1 1099 1310 -6255 * 2070 188 84 2 chr6 129141451 129141961 -53273281 + L1 LINE L1 4293 4844 -2721 4983 96 30 17 chr6 129141961 129142741 -53272501 + L1MA3 LINE L1 5516 6305 0 376 173 73 27 chr6 129142758 129142868 -53272374 + L1MB8 LINE L1 6064 6178 0 1124 228 36 4 chr6 129142899 129143149 -53272093 + MLT1D LTR MaLR 246 503 -2 21 36 0 0 chr6 129144567 129144595 -53270647 + AT_rich Low_complexity Low_complexity 1 28 0 1241 73 0 0 chr6 129146070 129146235 -53269007 - L1PA5 LINE L1 -1 6153 5989 252 86 0 0 chr6 129147293 129147328 -53267914 + (TA)n Simple_repeat Simple_repeat 1 35 0 247 297 54 0 chr6 129147337 129147411 -53267831 + L2 LINE L2 3199 3276 -37 2000 177 53 31 chr6 129147626 129148168 -53267074 + MLT2A2 LTR ERVL 1 554 0 2373 92 0 0 chr6 129148443 129148748 -53266494 - AluSq SINE Alu -8 305 1 1047 193 38 15 chr6 129150256 129150521 -53264721 + L1MA4 LINE L1 6028 6298 -2 556 262 22 33 chr6 129150522 129150705 -53264537 + L1ME3 LINE L1 5940 6120 -42 256 350 63 63 chr6 129151171 129151394 -53263848 + L2 LINE L2 3030 3252 -20 225 233 27 0 chr6 129152715 129152788 -53262454 + (TA)n Simple_repeat Simple_repeat 2 76 0 1875 146 21 24 chr6 129154263 129154639 -53260603 - THE1C LTR MaLR 0 375 1 512 365 6 0 chr6 129155327 129155508 -53259734 - ERVL LTR ERVL -5174 590 409 402 314 75 20 chr6 129156373 129156825 -53258417 + L1ME LINE L1 4028 4504 -1642 288 54 0 0 chr6 129157240 129157277 -53257965 - L1PA8 LINE L1 -11 6161 6125 443 322 32 29 chr6 129157319 129157771 -53257471 + L1ME LINE L1 5257 5713 -457 7302 188 145 50 chr6 129159178 129159658 -53255584 - L1MC3 LINE L1 -7 7778 7345 237 275 25 12 chr6 129159658 129159738 -53255504 - MLT1F1 LTR MaLR -460 107 27 7302 188 145 50 chr6 129159738 129161259 -53253983 - L1MC3 LINE L1 -440 7345 5500 3080 267 39 26 chr6 129161247 129162241 -53253001 - L1MCb LINE L1 -5005 1040 34 * 235 197 33 49 chr6 129162318 129162379 -53252863 - MLT1L LTR MaLR -542 73 14 2246 117 0 0 chr6 129162396 129162704 -53252538 - AluSc SINE Alu -1 308 1 204 333 206 0 chr6 129163413 129163578 -53251664 - MIR SINE MIR -46 216 18 24 0 0 0 chr6 129163871 129163895 -53251347 + AT_rich Low_complexity Low_complexity 1 24 0 368 250 73 0 chr6 129164030 129164154 -53251088 + L1MA9 LINE L1 6180 6312 0 600 351 83 17 chr6 129164415 129164990 -53250252 + L1MC/D LINE L1 4110 4722 -1424 277 278 109 35 chr6 129165096 129165326 -53249916 + L1MC/D LINE L1 4893 5139 -1007 342 0 0 0 chr6 129165333 129165371 -53249871 + (CA)n Simple_repeat Simple_repeat 2 39 0 609 242 122 78 chr6 129165500 129165884 -53249358 + L1MC/D LINE L1 5316 5716 -2092 2246 208 70 11 chr6 129166019 129166547 -53248695 + MER89 LTR ERV1 1 559 0 645 324 68 36 chr6 129166750 129167192 -53248050 + HAL1 LINE L1 581 1036 -1471 406 379 69 47 chr6 129167263 129167770 -53247472 + L1PB4 LINE L1 11 528 -6322 245 326 0 0 chr6 129168495 129168587 -53246655 + L1PB4 LINE L1 1473 1564 -5285 306 287 40 10 chr6 129168593 129168694 -53246548 + L1PB4 LINE L1 1357 1460 -5390 294 104 42 0 chr6 129168699 129168747 -53246495 + L1PB4 LINE L1 2583 2632 -4217 10292 217 40 16 chr6 129168765 129171153 -53244089 + L1PB4 LINE L1 3052 5382 -1477 2037 137 24 45 chr6 129171153 129171534 -53243708 + THE1C LTR MaLR 3 375 0 10292 217 40 16 chr6 129171534 129171928 -53243314 + L1PB4 LINE L1 5382 5765 -1094 1998 146 84 27 chr6 129171928 129172331 -53242911 - MSTB LTR MaLR 0 426 1 10292 217 40 16 chr6 129172331 129172457 -53242785 + L1PB4 LINE L1 5765 5887 -972 2262 84 0 10 chr6 129172457 129172754 -53242488 + AluSc SINE Alu 4 297 -12 10292 217 40 16 chr6 129172754 129173558 -53241684 + L1PB4 LINE L1 5887 6859 0 2164 135 27 43 chr6 129173635 129173843 -53241399 - THE1B LTR MaLR 0 364 163 2213 88 0 13 chr6 129173843 129174149 -53241093 + AluY SINE Alu 3 304 -7 2164 135 27 43 chr6 129174149 129174310 -53240932 - THE1B LTR MaLR -201 163 1 829 270 49 61 chr6 129174357 129174786 -53240456 + HAL1 LINE L1 1286 1709 -798 373 356 85 16 chr6 129174788 129175094 -53240148 + L1M4 LINE L1 4519 4845 -1301 625 226 124 14 chr6 129175315 129175598 -53239644 - Charlie2 DNA MER1_type -188 2674 2361 577 263 73 97 chr6 129175612 129175884 -53239358 - L1ME3A LINE L1 -3 6167 5905 2054 99 14 10 chr6 129175884 129176177 -53239065 + AluSx SINE Alu 9 302 -10 577 263 73 97 chr6 129176177 129176276 -53238966 - L1ME3A LINE L1 -265 5905 5805 483 247 92 51 chr6 129177018 129177310 -53237932 - L1ME3A LINE L1 -5 6165 5862 257 308 96 6 chr6 129177343 129177499 -53237743 - L1ME LINE L1 -2265 3815 3646 452 296 65 63 chr6 129177526 129177924 -53237318 - L1ME LINE L1 -4129 2132 1734 367 287 36 24 chr6 129177938 129178105 -53237137 - L1ME LINE L1 -4589 1672 1504 663 312 85 32 chr6 129178245 129178911 -53236331 - L1ME LINE L1 -4834 1144 536 295 297 17 0 chr6 129179687 129179805 -53235437 - L1MCa LINE L1 -4791 1635 1516 232 328 25 17 chr6 129179841 129179960 -53235282 - MLT1J LTR MaLR -293 218 99 26 74 0 0 chr6 129180008 129180062 -53235180 + AT_rich Low_complexity Low_complexity 1 54 0 24 67 0 0 chr6 129180143 129180188 -53235054 + AT_rich Low_complexity Low_complexity 1 45 0 686 248 183 0 chr6 129180435 129180709 -53234533 - MER5C DNA MER1_type 0 324 1 211 350 43 43 chr6 129180819 129180982 -53234260 - L2 LINE L2 -863 2451 2289 5002 122 28 1 chr6 129181141 129181927 -53233315 - L1MA2 LINE L1 0 6304 5498 3034 153 5 88 chr6 129181927 129182601 -53232641 - L1MA2 LINE L1 -1754 4392 3775 483 110 0 0 chr6 129182614 129182687 -53232555 - L1PA15 LINE L1 -12 6153 6081 737 329 83 43 chr6 129183632 129184258 -53230984 - HAL1b LINE L1 -572 776 126 359 308 77 39 chr6 129184327 129184561 -53230681 - L1ME3 LINE L1 -7 6138 5896 227 294 101 9 chr6 129185670 129185779 -53229463 - MIR SINE MIR -71 191 73 36 23 0 0 chr6 129186875 129186918 -53228324 + AT_rich Low_complexity Low_complexity 1 43 0 551 176 92 0 chr6 129187395 129187537 -53227705 - L1MA7 LINE L1 -2 6289 6135 21 0 0 0 chr6 129187539 129187560 -53227682 + AT_rich Low_complexity Low_complexity 1 21 0 604 284 119 51 chr6 129187927 129188271 -53226971 - L1ME3 LINE L1 -817 5312 4916 1886 188 20 33 chr6 129188271 129188664 -53226578 + MLT1B LTR MaLR 1 388 -2 604 284 119 51 chr6 129188664 129188864 -53226378 - L1ME3 LINE L1 -1213 4916 4731 21 0 0 0 chr6 129188925 129188946 -53226296 + AT_rich Low_complexity Low_complexity 1 21 0 321 245 102 57 chr6 129189057 129189371 -53225871 + L1MEd LINE L1 905 1232 -4887 381 291 68 50 chr6 129189768 129189988 -53225254 - L1ME3 LINE L1 -5419 700 477 4823 240 48 49 chr6 129191646 129194098 -53221144 - L1MC1 LINE L1 -10 6323 3880 1792 165 3 19 chr6 129194098 129194407 -53220835 - AluSx SINE Alu -8 304 1 4823 240 48 49 chr6 129194407 129194715 -53220527 - L1MC1 LINE L1 -2453 3880 3573 1092 221 82 3 chr6 129194729 129195060 -53220182 - L1MC1 LINE L1 -2814 3332 2976 381 241 37 117 chr6 129195723 129195885 -53219357 + MER5B DNA MER1_type 29 177 -1 7420 39 0 0 chr6 129197595 129198517 -53216725 - L1PA5 LINE L1 0 6154 5233 15370 45 3 2 chr6 129198517 129200431 -53214811 + L1PA5 LINE L1 3312 5228 -918 22 0 0 0 chr6 129202176 129202198 -53213044 + AT_rich Low_complexity Low_complexity 1 22 0 200 83 0 28 chr6 129202698 129202734 -53212508 + (TA)n Simple_repeat Simple_repeat 1 35 0 193 250 0 21 chr6 129203008 129203056 -53212186 - L2 LINE L2 0 3313 3267 391 234 41 90 chr6 129203726 129203905 -53211337 - L1ME3A LINE L1 0 6170 6000 21 36 0 0 chr6 129204357 129204385 -53210857 + AT_rich Low_complexity Low_complexity 1 28 0 1309 236 3 0 chr6 129204425 129204738 -53210504 - L1PA16 LINE L1 -930 5216 4903 * 4686 131 28 20 chr6 129204731 129205622 -53209620 + L1PA16 LINE L1 5225 6157 -9 1121 29 0 0 chr6 129206300 129206437 -53208805 + L1PA6 LINE L1 6014 6150 -4 2083 145 3 0 chr6 129207550 129207861 -53207381 + AluSx SINE Alu 1 312 0 522 275 101 17 chr6 129208206 129208384 -53206858 + L1MEd LINE L1 906 1098 -5432 2241 39 60 11 chr6 129208392 129208677 -53206565 + AluY SINE Alu 1 299 -12 1759 166 65 11 chr6 129210072 129210428 -53204814 - L1MB5 LINE L1 -8 6166 5792 273 296 52 22 chr6 129210435 129210570 -53204672 + L1MEd LINE L1 1852 1990 -4550 25 65 0 0 chr6 129210661 129210707 -53204535 + AT_rich Low_complexity Low_complexity 1 46 0 582 260 67 61 chr6 129210707 129211001 -53204241 + L1MEd LINE L1 2208 2506 -4215 189 0 0 0 chr6 129211001 129211022 -53204220 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 582 260 67 61 chr6 129211022 129211088 -53204154 + L1MEd LINE L1 2506 2570 -4151 2069 125 16 22 chr6 129211150 129211461 -53203781 + AluSx SINE Alu 3 311 -1 325 235 42 78 chr6 129211461 129211627 -53203615 + L1MEd LINE L1 2580 2739 -3801 270 237 0 26 chr6 129212138 129212160 -53203082 + (TA)n Simple_repeat Simple_repeat 2 23 -52 4254 64 54 32 chr6 129212160 129212757 -53202485 + LTR66 LTR ERVL 1 610 0 270 237 0 26 chr6 129212757 129212810 -53202432 + (TA)n Simple_repeat Simple_repeat 23 75 0 676 298 36 9 chr6 129212827 129213159 -53202083 + L1MEd LINE L1 3071 3411 -3129 1679 259 59 57 chr6 129213422 129214357 -53200885 + L1ME LINE L1 2721 3660 -2486 2455 48 3 7 chr6 129214357 129214667 -53200575 + AluY SINE Alu 1 309 -2 1679 259 59 57 chr6 129214667 129214752 -53200490 + L1ME LINE L1 3660 3743 -2403 813 290 92 22 chr6 129214797 129215114 -53200128 + HERV16 LTR ERVL 959 1297 -3699 376 251 62 40 chr6 129215256 129215431 -53199811 + HERV16 LTR ERVL 1478 1723 -3273 446 160 40 0 chr6 129215431 129215506 -53199736 + FLAM_A SINE Alu 33 110 -32 635 323 18 9 chr6 129215627 129215847 -53199395 + HERV16 LTR ERVL 1856 2077 -2919 895 206 120 22 chr6 129215861 129216128 -53199114 - Looper DNA T2_type -487 1071 779 231 247 155 10 chr6 129216362 129216459 -53198783 - MIR SINE MIR -150 112 2 444 302 93 22 chr6 129216544 129216812 -53198430 + L1ME LINE L1 4876 5162 -984 501 318 53 45 chr6 129216924 129217412 -53197830 + L1ME LINE L1 5304 5795 -375 23 0 0 0 chr6 129217412 129217435 -53197807 + AT_rich Low_complexity Low_complexity 1 23 0 5254 167 54 21 chr6 129217819 129218701 -53196541 - L1MC1 LINE L1 -18 6315 5386 1451 211 56 28 chr6 129218701 129219056 -53196186 - MLT1A1 LTR MaLR 0 365 1 5254 167 54 21 chr6 129219056 129219412 -53195830 - L1MC1 LINE L1 -947 5386 5043 365 310 23 0 chr6 129219634 129219763 -53195479 + GA-rich Low_complexity Low_complexity 4 135 0 231 281 11 90 chr6 129220450 129220539 -53194703 - MLT1J LTR MaLR -326 185 104 482 322 83 39 chr6 129220666 129221051 -53194191 + MLT1K LTR MaLR 169 570 -18 1269 144 80 0 chr6 129221178 129221442 -53193800 - L1MA7 LINE L1 -3 6288 6004 23 33 0 0 chr6 129221854 129221884 -53193358 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr6 129222054 129222077 -53193165 + AT_rich Low_complexity Low_complexity 1 23 0 189 241 0 0 chr6 129222378 129222432 -53192810 + GA-rich Low_complexity Low_complexity 2 55 0 373 261 38 29 chr6 129223630 129223808 -53191434 - MER58A DNA MER1_type 0 224 11 3950 205 34 38 chr6 129224013 129225851 -53189391 + L1MB3 LINE L1 4344 6175 -8 260 272 95 14 chr6 129226060 129226077 -53189165 - L1MA10 LINE L1 0 6334 6318 1502 274 98 11 chr6 129226077 129226733 -53188509 - L1ME2 LINE L1 -9 6950 6238 517 211 93 31 chr6 129226737 129226931 -53188311 - L1ME2 LINE L1 -4342 2780 2575 389 250 91 0 chr6 129227065 129227197 -53188045 - L1ME2 LINE L1 -4613 2509 2366 493 171 0 0 chr6 129227206 129227288 -53187954 - AluJb SINE Alu 0 302 221 790 161 0 0 chr6 129227288 129227418 -53187824 - AluJb SINE Alu -124 188 59 842 104 15 30 chr6 129227418 129227553 -53187689 - AluSg/x SINE Alu -9 301 169 360 212 15 0 chr6 129227554 129227620 -53187622 - AluJb SINE Alu -235 67 1 461 133 12 0 chr6 129227747 129227830 -53187412 - L1PB2 LINE L1 -1 6150 6067 362 261 68 74 chr6 129227905 129229157 -53186085 - L1ME2 LINE L1 -4926 2015 649 274 289 31 57 chr6 129229353 129229512 -53185730 - L2 LINE L2 -82 3231 3077 25 0 0 0 chr6 129229812 129229837 -53185405 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 129231045 129231073 -53184169 + AT_rich Low_complexity Low_complexity 1 28 0 477 105 186 0 chr6 129231944 129232030 -53183212 - L1PA16 LINE L1 -9 6157 6056 2279 94 51 184 chr6 129232035 129232546 -53182696 + MLT2A2 LTR ERVL 3 445 -8 6070 201 62 11 chr6 129232549 129234630 -53180612 - L1PA16 LINE L1 -105 6061 3862 1687 264 68 8 chr6 129234638 129235127 -53180115 - LTR53 LTR ERVL 0 519 2 773 240 5 34 chr6 129235132 129235340 -53179902 - MER20 DNA MER1_type -14 205 4 378 362 88 39 chr6 129235928 129236817 -53178425 - L2 LINE L2 -470 2844 1913 2494 78 0 0 chr6 129237135 129237444 -53177798 - AluY SINE Alu -2 309 1 23 68 0 0 chr6 129238321 129238365 -53176877 + AT_rich Low_complexity Low_complexity 1 44 0 1119 186 108 48 chr6 129238571 129238866 -53176376 - MLT1A1 LTR MaLR -52 313 1 325 191 15 0 chr6 129238871 129238939 -53176303 - L2 LINE L2 -2596 718 650 5042 129 2 20 chr6 129239296 129240110 -53175132 - L1PA13 LINE L1 -1 6162 5363 392 113 0 0 chr6 129240109 129240171 -53175071 + L1P LINE L1 5306 5367 -788 * 21 0 0 0 chr6 129240701 129240722 -53174520 + AT_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr6 129240880 129240910 -53174332 + (CA)n Simple_repeat Simple_repeat 2 31 0 389 193 27 0 chr6 129242253 129242403 -53172839 + (TAG)n Simple_repeat Simple_repeat 2 155 0 542 320 78 51 chr6 129243732 129244141 -53171101 + HAL1b LINE L1 57 476 -872 482 299 42 73 chr6 129244185 129244570 -53170672 + HAL1b LINE L1 547 919 -429 3205 132 21 0 chr6 129246249 129246728 -53168514 - MER1A DNA MER1_type 0 529 41 21 36 0 0 chr6 129246875 129246903 -53168339 + AT_rich Low_complexity Low_complexity 1 28 0 900 326 103 26 chr6 129247051 129248049 -53167193 + L1MC4a LINE L1 3671 4751 -1395 996 263 116 31 chr6 129248370 129248992 -53166250 + L1MC4a LINE L1 5270 5477 -882 29 0 0 0 chr6 129249251 129249280 -53165962 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 129249719 129249741 -53165501 + AT_rich Low_complexity Low_complexity 1 22 0 207 204 0 0 chr6 129249836 129249880 -53165362 + A-rich Low_complexity Low_complexity 1 44 0 486 282 122 24 chr6 129250042 129250255 -53164987 - MIR SINE MIR -26 236 3 1714 202 20 9 chr6 129250637 129250979 -53164263 - MER7A DNA MER2_type -2 344 1 1418 183 36 46 chr6 129251304 129251610 -53163632 - AluJb SINE Alu -7 305 3 386 346 61 26 chr6 129251649 129251880 -53163362 - L3 LINE CR1 -65 1512 1274 870 274 84 46 chr6 129251953 129252068 -53163174 - MLT2F LTR ERVL -2 661 552 1051 192 201 41 chr6 129252068 129252437 -53162805 - MSTC LTR MaLR 0 428 1 870 274 84 46 chr6 129252437 129252689 -53162553 - MLT2F LTR ERVL -111 552 280 1715 276 50 8 chr6 129252713 129253192 -53162050 + LTR40a LTR ERVL 21 519 0 732 291 44 55 chr6 129253202 129253477 -53161765 - MLT2F LTR ERVL -391 272 1 1147 271 61 65 chr6 129253516 129253796 -53161446 + LTR53 LTR ERVL 1 280 -239 2278 173 47 16 chr6 129253796 129254282 -53160960 + LTR22 LTR ERVK 5 505 -4 1147 271 61 65 chr6 129254282 129254522 -53160720 + LTR53 LTR ERVL 280 519 0 839 263 131 46 chr6 129254522 129254600 -53160642 + MLT1H LTR MaLR 127 197 -352 1423 205 18 58 chr6 129254600 129254980 -53160262 + MLT1A1 LTR MaLR 1 365 0 839 263 131 46 chr6 129254980 129255289 -53159953 + MLT1H LTR MaLR 197 547 -2 258 295 13 13 chr6 129255378 129255456 -53159786 + MIR SINE MIR 17 94 -114 28 29 0 0 chr6 129256378 129256413 -53158829 + AT_rich Low_complexity Low_complexity 1 35 0 347 343 80 11 chr6 129257513 129257688 -53157554 - MIR3 SINE MIR -3 205 19 1886 153 13 81 chr6 129258422 129258815 -53156427 + MER47A DNA MER2_type 1 366 0 13129 199 54 25 chr6 129259035 129265409 -53149833 + L1PB1 LINE L1 114 6867 0 29 78 0 0 chr6 129265409 129265473 -53149769 + AT_rich Low_complexity Low_complexity 1 64 0 5699 132 41 7 chr6 129265987 129266932 -53148310 - Tigger1 DNA MER2_type -1 2417 1441 12456 25 5 4 chr6 129266932 129268435 -53146807 - L1P LINE L1 -1289 4857 3353 295 289 51 77 chr6 129268436 129268592 -53146650 + MIR SINE MIR 61 212 -50 8252 156 21 14 chr6 129268786 129270240 -53145002 - Tigger1 DNA MER2_type -954 1464 1 4793 92 5 0 chr6 129271818 129272490 -53142752 - L1PA8 LINE L1 -1 6171 5497 1142 104 60 0 chr6 129272495 129272678 -53142564 + L1PA8 LINE L1 5326 5519 -612 429 284 118 38 chr6 129273904 129274115 -53141127 - MIR SINE MIR -10 252 25 26 0 0 0 chr6 129274602 129274628 -53140614 + AT_rich Low_complexity Low_complexity 1 26 0 209 371 56 21 chr6 129274734 129274877 -53140365 + MIR SINE MIR 29 176 -86 23 0 0 0 chr6 129274923 129274946 -53140296 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr6 129274976 129275022 -53140220 + AT_rich Low_complexity Low_complexity 1 46 0 37 62 0 0 chr6 129275503 129275568 -53139674 + AT_rich Low_complexity Low_complexity 1 65 0 1607 232 39 2 chr6 129276915 129277324 -53137918 + L1MA4 LINE L1 5868 6291 -9 307 279 18 61 chr6 129277509 129277674 -53137568 + MER103 DNA DNA 4 161 -5 1007 214 116 23 chr6 129278782 129279085 -53136157 + MER87 LTR ERV1 211 541 0 2498 243 77 29 chr6 129279675 129280483 -53134759 - L1ME1 LINE L1 -5 6230 5384 4034 276 58 23 chr6 129280491 129281065 -53134177 - L1ME1 LINE L1 -4583 1813 1261 198 103 0 0 chr6 129281065 129281094 -53134148 + (TA)n Simple_repeat Simple_repeat 1 29 0 4034 276 58 23 chr6 129281094 129282237 -53133005 - L1ME1 LINE L1 -5135 1261 35 300 200 0 0 chr6 129283352 129283417 -53131825 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 453 278 96 10 chr6 129284859 129285123 -53130119 - LTR33A LTR ERVL 0 523 328 254 364 8 0 chr6 129286938 129287056 -53128186 - LTR33 LTR ERVL -389 132 14 7419 130 4 2 chr6 129287170 129288331 -53126911 - L1P LINE L1 -923 5223 4060 5999 84 2 9 chr6 129288328 129289146 -53126096 + L1PA8A LINE L1 5319 6131 0 * 28 0 0 0 chr6 129289208 129289236 -53126006 + AT_rich Low_complexity Low_complexity 1 28 0 274 217 56 21 chr6 129289351 129289494 -53125748 + T-rich Low_complexity Low_complexity 4 151 0 21 0 0 0 chr6 129289864 129289885 -53125357 + AT_rich Low_complexity Low_complexity 1 21 0 274 336 40 16 chr6 129289905 129290030 -53125212 + MER5B DNA MER1_type 10 137 -41 890 117 0 37 chr6 129290246 129290409 -53124833 + L1MA4 LINE L1 6138 6294 -6 246 128 0 0 chr6 129291389 129291428 -53123814 + (CA)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chr6 129292116 129292136 -53123106 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1595 225 61 59 chr6 129292494 129293037 -53122205 - LTR68 LTR ERV1 -24 716 173 2173 128 0 3 chr6 129293163 129293475 -53121767 + AluSx SINE Alu 2 312 0 5839 122 12 0 chr6 129293475 129294466 -53120776 + L1PA14 LINE L1 5158 6160 -1 980 147 120 41 chr6 129294540 129294835 -53120407 - L1MA7 LINE L1 -3 7309 7027 12289 204 47 17 chr6 129294846 129298070 -53117172 - L1MA7 LINE L1 -743 6424 3255 21 36 0 0 chr6 129298080 129298108 -53117134 + AT_rich Low_complexity Low_complexity 1 28 0 2183 260 32 32 chr6 129298168 129299631 -53115611 - L1MA7 LINE L1 -4180 2988 1545 305 268 152 9 chr6 129301722 129301834 -53113408 + L2 LINE L2 3186 3313 0 1502 201 54 3 chr6 129301991 129302032 -53113210 - MLT2D LTR ERVL 0 414 377 516 45 0 0 chr6 129302032 129302099 -53113143 + (TG)n Simple_repeat Simple_repeat 2 68 0 1502 201 54 3 chr6 129302099 129302355 -53112887 - MLT2D LTR ERVL -37 377 102 3512 183 12 80 chr6 129302356 129303093 -53112149 + L1PA13 LINE L1 1 687 -6894 7597 173 25 19 chr6 129303110 129304893 -53110349 + L1PA13 LINE L1 5218 6954 -647 1340 123 150 62 chr6 129304893 129305216 -53110026 + AluSx SINE Alu 1 346 0 7597 173 25 19 chr6 129305216 129305864 -53109378 + L1PA13 LINE L1 6954 7597 -4 623 159 68 15 chr6 129305968 129306100 -53109142 - MLT2D LTR ERVL -323 141 3 24 0 0 0 chr6 129307576 129307600 -53107642 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr6 129307626 129307652 -53107590 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 80 0 0 chr6 129307654 129307704 -53107538 + AT_rich Low_complexity Low_complexity 1 50 0 26 30 0 0 chr6 129308205 129308238 -53107004 + AT_rich Low_complexity Low_complexity 1 33 0 1707 133 53 0 chr6 129308952 129309264 -53105978 + AluSq SINE Alu 7 332 0 832 237 34 13 chr6 129309972 129310244 -53104998 + MLT2D LTR ERVL 1 332 -82 1717 195 81 69 chr6 129310290 129310809 -53104433 + MER65B LTR ERV1 1 525 -6 243 0 0 0 chr6 129310810 129310837 -53104405 + (TG)n Simple_repeat Simple_repeat 2 28 0 289 75 0 0 chr6 129310837 129310877 -53104365 + MLT2D LTR ERVL 515 554 0 358 316 37 0 chr6 129311141 129311277 -53103965 - MLT1J2 LTR MaLR -218 232 92 331 266 157 16 chr6 129311363 129311611 -53103631 - HAL1 LINE L1 -329 2178 1896 236 234 22 88 chr6 129311997 129312224 -53103018 - MER97c DNA MER1_type? -50 1040 829 447 178 0 22 chr6 129312464 129312554 -53102688 + MLT1E3 LTR MaLR 174 261 -393 715 254 15 41 chr6 129312602 129312799 -53102443 + MLT1E3 LTR MaLR 381 572 -52 849 36 18 18 chr6 129312801 129312913 -53102329 - L1PA10 LINE L1 -4 6164 6053 3374 142 13 13 chr6 129312915 129313513 -53101729 + L1P LINE L1 4784 5381 -765 403 131 0 0 chr6 129313514 129313575 -53101667 + MLT1E3 LTR MaLR 560 620 -4 1202 276 61 18 chr6 129313582 129314307 -53100935 + L1ME1 LINE L1 3683 4438 -1708 * 1429 185 5 13 chr6 129314285 129314611 -53100631 + L1MB1 LINE L1 5616 5938 -251 1997 155 29 36 chr6 129314612 129315025 -53100217 + L1MA9 LINE L1 5903 6312 0 1870 280 49 21 chr6 129315027 129315788 -53099454 + L1ME1 LINE L1 5301 6082 -84 2232 56 49 3 chr6 129315813 129316097 -53099145 - AluY SINE Alu -14 297 1 4723 220 21 15 chr6 129316116 129316323 -53098919 + L1PA15-16 LINE L1 1794 1998 -4851 2045 118 21 0 chr6 129316323 129316602 -53098640 + AluSx SINE Alu 1 285 -27 261 0 0 0 chr6 129316605 129316634 -53098608 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4723 220 21 15 chr6 129316634 129317710 -53097532 + L1PA15-16 LINE L1 1999 3087 -3762 4790 42 0 0 chr6 129317711 129318372 -53096870 - L1P2 LINE L1 -701 5454 4794 7832 239 26 6 chr6 129318375 129320376 -53094866 + L1PA15-16 LINE L1 3092 5133 -1716 1278 251 34 0 chr6 129320383 129320710 -53094532 + L1PA15 LINE L1 2192 2529 -3617 4701 154 45 11 chr6 129320726 129322399 -53092843 + L1PA15 LINE L1 4472 6165 0 31 0 0 0 chr6 129322528 129322559 -53092683 + AT_rich Low_complexity Low_complexity 1 31 0 2327 118 0 0 chr6 129322703 129323016 -53092226 + AluSp SINE Alu 1 313 0 658 255 103 10 chr6 129323117 129323439 -53091803 - MER97c DNA MER1_type? -523 567 197 468 186 81 16 chr6 129323600 129323724 -53091518 - MER97a DNA MER1_type? -759 135 4 366 305 19 0 chr6 129323942 129324047 -53091195 - LTR16C LTR ERVL 0 491 385 881 276 158 23 chr6 129324049 129324480 -53090762 + LTR16C LTR ERVL 3 491 0 755 343 37 19 chr6 129324607 129324928 -53090314 - LTR16C LTR ERVL -102 389 63 1450 211 72 65 chr6 129327798 129328257 -53086985 - MLT1C LTR MaLR 0 467 6 306 319 102 86 chr6 129328917 129330189 -53085053 - L2 LINE L2 -69 3203 1917 31 68 0 0 chr6 129330838 129330897 -53084345 + AT_rich Low_complexity Low_complexity 1 59 0 1965 239 28 8 chr6 129331243 129331855 -53083387 - L1M4 LINE L1 -2976 3170 2547 314 306 197 20 chr6 129332051 129332198 -53083044 + MER5A DNA MER1_type 9 181 -8 401 320 35 25 chr6 129332227 129332424 -53082818 + L2 LINE L2 3114 3312 -1 272 360 20 13 chr6 129332512 129332662 -53082580 + L2 LINE L2 2831 2981 -291 338 237 129 29 chr6 129332913 129333052 -53082190 - L1 LINE L1 -2214 3932 3780 1729 188 43 3 chr6 129333058 129333382 -53081860 - MER7A DNA MER2_type -10 336 2 388 303 79 28 chr6 129333664 129333881 -53081361 + MIR SINE MIR 37 262 0 583 262 57 19 chr6 129335150 129335360 -53079882 - MLT1L LTR MaLR 0 615 398 394 279 0 19 chr6 129335460 129335564 -53079678 - MLT1L LTR MaLR -349 266 165 21 0 0 0 chr6 129335982 129336003 -53079239 + AT_rich Low_complexity Low_complexity 1 21 0 2192 128 3 6 chr6 129336189 129336502 -53078740 + AluSx SINE Alu 1 312 0 2116 141 0 0 chr6 129336547 129336851 -53078391 + AluSx SINE Alu 1 304 -8 1307 243 59 77 chr6 129337372 129338113 -53077129 + L1M4 LINE L1 4261 4988 -1158 2094 135 3 0 chr6 129338151 129338448 -53076794 - AluSx SINE Alu -14 298 1 21 36 0 0 chr6 129338495 129338523 -53076719 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr6 129338553 129338582 -53076660 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr6 129338685 129338730 -53076512 + AT_rich Low_complexity Low_complexity 1 45 0 13086 196 41 35 chr6 129338793 129339394 -53075848 + L1M1 LINE L1 2 598 -6251 1660 158 44 72 chr6 129339394 129339780 -53075462 - THE1C LTR MaLR 0 375 1 9266 132 61 7 chr6 129339780 129341279 -53073963 - THE1C-int LTR MaLR 0 1580 1 1516 171 54 85 chr6 129341279 129341666 -53073576 - THE1C LTR MaLR 0 375 1 13086 196 41 35 chr6 129341666 129343173 -53072069 + L1M1 LINE L1 598 2135 -4714 1668 148 81 34 chr6 129343173 129343531 -53071711 + THE1C LTR MaLR 1 375 0 13086 196 41 35 chr6 129343531 129344253 -53070989 + L1M1 LINE L1 2135 2851 -3998 2644 188 27 14 chr6 129344252 129345171 -53070071 + L1M1 LINE L1 5451 6389 -616 * 629 265 0 6 chr6 129345172 129345334 -53069908 + L1M2 LINE L1 10 170 -6679 804 204 15 15 chr6 129345365 129345561 -53069681 - L1 LINE L1 -921 5225 5030 7206 238 60 76 chr6 129345562 129348059 -53067183 + L1M2 LINE L1 193 2731 -4117 1734 244 31 17 chr6 129348059 129348477 -53066765 - MSTB LTR MaLR -2 424 1 7206 238 60 76 chr6 129348477 129348722 -53066520 + L1M2 LINE L1 2731 2885 -3963 2625 10 0 3 chr6 129348722 129349037 -53066205 - AluYb8 SINE Alu 0 314 1 7206 238 60 76 chr6 129349037 129349139 -53066103 + L1M2 LINE L1 2885 2987 -3861 4184 150 13 0 chr6 129349139 129349975 -53065267 + L1MA3 LINE L1 5105 5949 -356 1029 212 147 56 chr6 129351987 129352327 -53062915 + MLT1A2 LTR MaLR 4 374 0 216 0 0 0 chr6 129352432 129352456 -53062786 + (TA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr6 129354471 129354492 -53060750 + AT_rich Low_complexity Low_complexity 1 21 0 291 296 64 32 chr6 129355990 129356115 -53059127 + MIR SINE MIR 3 131 -131 5739 90 24 1 chr6 129356195 129357025 -53058217 - L1PA7 LINE L1 -1088 5058 4210 6500 81 7 0 chr6 129357025 129358100 -53057142 + L1PA7 LINE L1 5057 6140 -14 241 380 41 0 chr6 129358146 129358267 -53056975 + L2 LINE L2 217 342 -2972 2039 306 90 53 chr6 129358314 129359418 -53055824 + L2 LINE L2 1718 2861 -453 5777 146 29 5 chr6 129360457 129361485 -53053757 + L1MA4 LINE L1 5237 6289 -11 187 295 53 42 chr6 129362000 129362095 -53053147 + L3 LINE CR1 1361 1456 -121 277 339 70 26 chr6 129362412 129362639 -53052603 - L2 LINE L2 -928 2386 2150 1995 132 10 7 chr6 129362639 129362949 -53052293 + AluSx SINE Alu 1 311 -1 12025 105 24 2 chr6 129362951 129365043 -53050199 + L1PA8 LINE L1 3505 5639 -533 14739 32 0 0 chr6 129365161 129367585 -53047657 + L1PA3 LINE L1 3595 6018 -137 7203 43 0 12 chr6 129367684 129368687 -53046555 - L1PA4 LINE L1 0 6155 5157 7371 31 0 0 chr6 129368703 129369681 -53045561 - L1PA3 LINE L1 0 6155 5176 2961 102 0 11 chr6 129369781 129370231 -53045011 + L1PA8 LINE L1 5723 6167 -5 441 314 88 57 chr6 129370295 129370591 -53044651 - L2 LINE L2 -1246 2068 1764 201 175 0 25 chr6 129370659 129370699 -53044543 + A-rich Low_complexity Low_complexity 2 40 0 248 303 165 44 chr6 129370939 129371351 -53043891 - L2 LINE L2 -1823 1491 1030 267 265 0 0 chr6 129371435 129371503 -53043739 + GA-rich Low_complexity Low_complexity 3 70 0 728 316 90 38 chr6 129372359 129373092 -53042150 + L1ME1 LINE L1 346 1116 -5003 2363 242 111 27 chr6 129373100 129374462 -53040780 + L1ME1 LINE L1 4663 6149 0 314 102 41 0 chr6 129374516 129374565 -53040677 + MER116 DNA Mariner 30 80 0 387 0 0 0 chr6 129375166 129375209 -53040033 + (TG)n Simple_repeat Simple_repeat 1 43 0 22 70 0 0 chr6 129375575 129375618 -53039624 + AT_rich Low_complexity Low_complexity 1 43 0 286 343 78 22 chr6 129376040 129376311 -53038931 + MLT1J1 LTR MaLR 24 309 -137 227 31 31 0 chr6 129376362 129376394 -53038848 + (TC)n Simple_repeat Simple_repeat 2 34 0 378 0 0 0 chr6 129376394 129376436 -53038806 + (CA)n Simple_repeat Simple_repeat 1 42 0 429 338 29 45 chr6 129377749 129378060 -53037182 - MLT1L LTR MaLR -213 402 97 257 236 0 18 chr6 129378695 129378750 -53036492 + MLT1J LTR MaLR 1 54 -457 267 245 21 85 chr6 129378823 129378917 -53036325 + MLT1J LTR MaLR 99 186 -325 1960 207 13 28 chr6 129379391 129379850 -53035392 + L1MA8 LINE L1 5834 6285 -6 223 186 0 0 chr6 129380053 129380096 -53035146 + (TAA)n Simple_repeat Simple_repeat 3 45 0 34582 42 120 5 chr6 129380245 129385744 -53029498 - L1PA4 LINE L1 -3 6152 1 237 329 35 0 chr6 129386328 129386471 -53028771 - L1ME LINE L1 -427 5694 5547 1717 240 116 48 chr6 129386587 129387516 -53027726 + L1MDb LINE L1 775 1724 -4682 2094 145 27 33 chr6 129387516 129387882 -53027360 + THE1B LTR MaLR 1 364 0 1717 240 116 48 chr6 129387882 129387911 -53027331 + L1MDb LINE L1 1724 1750 -4656 307 209 55 11 chr6 129387914 129388005 -53027237 + L1MDb LINE L1 2481 2575 -4012 433 282 40 37 chr6 129388050 129388348 -53026894 + L1MDb LINE L1 3944 4242 -2164 240 153 14 42 chr6 129388348 129388420 -53026822 + A-rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr6 129388535 129388556 -53026686 + AT_rich Low_complexity Low_complexity 1 21 0 1601 217 50 21 chr6 129388994 129389377 -53025865 - MSTD LTR MaLR -2 394 1 2052 266 47 39 chr6 129389378 129390016 -53025226 - MSTD-int LTR MaLR -3 1732 1090 828 289 71 26 chr6 129390019 129390330 -53024912 - MSTD LTR MaLR -71 325 1 530 342 75 7 chr6 129390812 129391119 -53024123 - LTR33 LTR ERVL -6 515 188 1753 132 58 71 chr6 129391380 129391760 -53023482 + THE1C LTR MaLR 1 375 0 738 319 100 64 chr6 129391858 129392597 -53022645 - ERVL LTR ERVL -736 5028 4263 24 0 0 0 chr6 129394388 129394412 -53020830 + AT_rich Low_complexity Low_complexity 1 24 0 24 85 0 0 chr6 129395282 129395341 -53019901 + AT_rich Low_complexity Low_complexity 1 59 0 235 176 55 121 chr6 129397297 129397388 -53017854 + MIR SINE MIR 117 201 -61 35 41 0 0 chr6 129398147 129398196 -53017046 + AT_rich Low_complexity Low_complexity 1 49 0 24 53 0 0 chr6 129398334 129398372 -53016870 + AT_rich Low_complexity Low_complexity 1 38 0 2115 96 0 34 chr6 129398470 129398763 -53016479 + AluY SINE Alu 15 297 -14 22 0 0 0 chr6 129399657 129399679 -53015563 + AT_rich Low_complexity Low_complexity 1 22 0 5928 133 68 69 chr6 129399716 129400057 -53015185 - Tigger3b DNA MER2_type -1798 1230 890 2066 162 31 17 chr6 129400057 129400416 -53014826 - THE1B LTR MaLR 0 364 1 5928 133 68 69 chr6 129400416 129401305 -53013937 - Tigger3b DNA MER2_type -2138 890 1 389 356 71 29 chr6 129401340 129401719 -53013523 - L1ME4a LINE L1 -251 5870 5476 28 0 0 0 chr6 129401873 129401901 -53013341 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 129401996 129402024 -53013218 + AT_rich Low_complexity Low_complexity 1 28 0 41 36 0 0 chr6 129402221 129402276 -53012966 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr6 129402993 129403015 -53012227 + AT_rich Low_complexity Low_complexity 1 22 0 1032 179 19 0 chr6 129403399 129403611 -53011631 + L1MA4 LINE L1 6080 6295 -5 258 230 60 40 chr6 129404252 129404281 -53010961 + MLT1L LTR MaLR 512 539 -76 1978 156 91 16 chr6 129404281 129404666 -53010576 - MLT2D LTR ERVL 0 414 1 258 230 60 40 chr6 129404666 129404736 -53010506 + MLT1L LTR MaLR 539 613 -2 319 400 32 0 chr6 129405388 129405578 -53009664 + HAL1b LINE L1 532 727 -621 25 51 0 0 chr6 129405629 129405668 -53009574 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr6 129406724 129406747 -53008495 + AT_rich Low_complexity Low_complexity 1 23 0 560 71 0 0 chr6 129407162 129407247 -53007995 + Alu SINE Alu 228 312 0 23 54 0 0 chr6 129408660 129408697 -53006545 + AT_rich Low_complexity Low_complexity 1 37 0 785 193 35 10 chr6 129408728 129408930 -53006312 - L1MA8 LINE L1 -4 6287 6081 2881 178 14 28 chr6 129408996 129409570 -53005672 - L1MA8 LINE L1 -214 6077 5512 8060 91 10 2 chr6 129409581 129411520 -53003722 - L1PA7 LINE L1 -3 7570 5624 8342 180 37 51 chr6 129411521 129413915 -53001327 - L1PA7 LINE L1 -2117 5448 3069 1421 261 73 56 chr6 129413916 129414434 -53000808 - L1M4 LINE L1 -5998 544 18 710 280 111 74 chr6 129414453 129415974 -52999268 + L1ME3A LINE L1 3373 4949 -1197 436 310 98 28 chr6 129415971 129416550 -52998692 + L1ME3A LINE L1 5293 5932 -238 * 2234 102 0 0 chr6 129416564 129416857 -52998385 + AluSq SINE Alu 3 295 -18 365 293 23 88 chr6 129416952 129417167 -52998075 + L1ME3A LINE L1 5970 6170 0 761 293 46 36 chr6 129418269 129418549 -52996693 - MLT1I LTR MaLR -24 385 103 232 154 0 0 chr6 129418694 129418733 -52996509 + THE1B LTR MaLR 266 304 -60 1669 179 0 25 chr6 129418751 129419076 -52996166 - THE1C LTR MaLR -58 317 1 344 272 9 0 chr6 129419355 129419469 -52995773 - L1M4 LINE L1 -1536 4610 4496 26 0 0 0 chr6 129419921 129419947 -52995295 + AT_rich Low_complexity Low_complexity 1 26 0 265 188 0 58 chr6 129422074 129422143 -52993099 - L1M4 LINE L1 -1894 4252 4188 595 309 106 35 chr6 129422258 129422822 -52992420 - L1M4 LINE L1 -2947 3199 2596 200 315 46 106 chr6 129424386 129424735 -52990507 - L2 LINE L2 -644 2670 2343 2246 102 0 0 chr6 129425425 129425720 -52989522 - AluSx SINE Alu -17 295 1 2428 47 0 13 chr6 129426450 129426749 -52988493 - AluY SINE Alu -16 295 1 921 154 50 16 chr6 129426966 129427148 -52988094 + L1PB4 LINE L1 5776 5963 -193 238 180 0 20 chr6 129427183 129427233 -52988009 + L1MC4 LINE L1 6658 6706 -1336 207 139 0 0 chr6 129427267 129427303 -52987939 + (TA)n Simple_repeat Simple_repeat 1 36 0 3077 169 13 20 chr6 129427303 129428335 -52986907 - L1P5 LINE L1 -365 5791 4761 189 107 0 0 chr6 129429034 129429062 -52986180 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 856 229 102 60 chr6 129429684 129429998 -52985244 + MLT2C1 LTR ERVL 6 332 -65 551 278 35 75 chr6 129430040 129430214 -52985028 + MIR SINE MIR 28 192 -70 1867 162 10 31 chr6 129430214 129430597 -52984645 - THE1C LTR MaLR 0 375 1 551 278 35 75 chr6 129430597 129430649 -52984593 + MIR SINE MIR 192 245 -17 7586 24 0 2 chr6 129432789 129434052 -52981190 - L1PA3 LINE L1 -5 6150 4885 207 349 0 0 chr6 129434116 129434182 -52981060 + L3 LINE CR1 1306 1371 -206 1150 231 0 0 chr6 129434915 129435131 -52980111 - MSTD LTR MaLR 0 396 181 343 342 160 32 chr6 129435319 129435600 -52979642 - HAL1 LINE L1 -391 2116 1800 347 285 54 8 chr6 129435663 129435793 -52979449 - HAL1 LINE L1 -823 1684 1549 320 333 12 24 chr6 129436362 129436530 -52978712 - L1M4 LINE L1 -1952 4194 4029 1466 208 63 74 chr6 129436721 129437115 -52978127 + MLT1B LTR MaLR 1 390 0 4804 243 84 48 chr6 129437118 129439169 -52976073 + L1M4 LINE L1 1 1977 -4669 2194 127 19 25 chr6 129439169 129439531 -52975711 + L1PA12 LINE L1 5795 6154 -14 180 111 0 0 chr6 129439536 129439563 -52975679 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 4804 243 84 48 chr6 129439563 129439812 -52975430 + L1M4 LINE L1 1980 2456 -4190 22 35 0 0 chr6 129439891 129439920 -52975322 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 129440194 129440224 -52975018 + AT_rich Low_complexity Low_complexity 1 30 0 2452 102 13 29 chr6 129440257 129440605 -52974637 - THE1C LTR MaLR 0 375 32 2214 93 20 3 chr6 129440605 129440905 -52974337 + AluSx SINE Alu 1 305 -7 2452 102 13 29 chr6 129440905 129440937 -52974305 - THE1C LTR MaLR -343 32 1 478 256 0 75 chr6 129441019 129441179 -52974063 + L1ME3A LINE L1 5534 5681 -481 2182 114 10 0 chr6 129441634 129441941 -52973301 + AluSq SINE Alu 1 310 -3 316 268 41 0 chr6 129442069 129442166 -52973076 + L1ME3A LINE L1 5684 5784 -386 463 210 171 92 chr6 129442168 129442496 -52972746 + L1ME3A LINE L1 5811 6164 -6 419 145 87 0 chr6 129442508 129442577 -52972665 - Tigger5 DNA MER2_type 0 2323 2249 255 300 130 25 chr6 129442954 129443231 -52972011 - L1M4 LINE L1 -3118 3028 2723 2023 143 0 3 chr6 129443430 129443731 -52971511 + AluSq SINE Alu 3 302 -11 1267 260 100 23 chr6 129443777 129445041 -52970201 - L1ME LINE L1 -346 5818 4377 671 266 59 41 chr6 129445052 129445390 -52969852 - L1ME1 LINE L1 -5 6161 5818 202 378 42 26 chr6 129446206 129446399 -52968843 - L2 LINE L2 -92 3221 3026 1904 201 6 6 chr6 129447259 129447622 -52967620 + MLT1A1 LTR MaLR 1 363 -2 2167 306 50 21 chr6 129448662 129449592 -52965650 + L1MEc LINE L1 37 993 -5403 945 221 35 25 chr6 129449664 129449949 -52965293 + L1MC2 LINE L1 4981 5268 -878 1639 176 17 3 chr6 129449949 129450238 -52965004 - MER7A DNA MER2_type 0 346 56 4580 213 26 14 chr6 129450327 129451367 -52963875 + L1MC2 LINE L1 5284 6336 -8 1828 295 84 21 chr6 129451366 129452745 -52962497 + L1MEc LINE L1 1010 2301 -3914 * 2275 36 0 11 chr6 129452745 129453019 -52962223 - AluY SINE Alu -11 300 30 1828 295 84 21 chr6 129453019 129454328 -52960914 + L1MEc LINE L1 2301 3911 -2304 22 0 0 0 chr6 129454619 129454641 -52960601 + AT_rich Low_complexity Low_complexity 1 22 0 4337 116 5 11 chr6 129454641 129455304 -52959938 - L1PB1 LINE L1 -2 6149 5491 741 290 86 37 chr6 129455305 129455760 -52959482 + L1MEc LINE L1 3909 4385 -1830 5147 222 41 22 chr6 129455776 129457427 -52957815 + L1MB7 LINE L1 3846 5530 -648 198 103 0 0 chr6 129457428 129457457 -52957785 + (TA)n Simple_repeat Simple_repeat 2 30 0 234 250 22 43 chr6 129457464 129457556 -52957686 + L1MC4 LINE L1 6613 6702 -1340 * 251 232 0 63 chr6 129457540 129457635 -52957607 - L1MC4 LINE L1 -1342 6700 6612 1917 180 96 28 chr6 129457650 129457969 -52957273 + L1MB7 LINE L1 5535 5898 -286 910 231 10 123 chr6 129457969 129458375 -52956867 + MLT1A1 LTR MaLR 4 363 -2 1917 180 96 28 chr6 129458375 129458522 -52956720 + L1MB7 LINE L1 5898 6033 -151 1075 248 42 13 chr6 129458557 129458940 -52956302 + L1MEc LINE L1 4453 4846 -1369 1884 139 17 41 chr6 129459289 129459633 -52955609 + MER1B DNA MER1_type 1 336 -1 385 284 94 0 chr6 129460240 129460367 -52954875 - MIR SINE MIR -44 218 80 321 136 51 0 chr6 129460876 129460935 -52954307 - MER4A LTR ERV1 0 664 603 29 70 0 0 chr6 129460941 129460998 -52954244 + AT_rich Low_complexity Low_complexity 1 57 0 1312 137 167 125 chr6 129461000 129461359 -52953883 - MER4A LTR ERV1 -32 632 259 487 158 32 11 chr6 129461358 129461453 -52953789 - MER4A LTR ERV1 -567 97 1 * 718 215 62 58 chr6 129461840 129462082 -52953160 - L1MD2 LINE L1 -17 6342 6100 235 348 89 28 chr6 129462481 129462728 -52952514 + L2 LINE L2 2268 2529 -785 252 0 0 0 chr6 129462785 129462813 -52952429 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 34 65 0 0 chr6 129463382 129463444 -52951798 + AT_rich Low_complexity Low_complexity 1 62 0 247 344 0 10 chr6 129463445 129463541 -52951701 - MIR3 SINE MIR -6 202 108 264 157 59 0 chr6 129463557 129463608 -52951634 + MLT1C LTR MaLR 1 54 -336 205 176 0 0 chr6 129463648 129463682 -52951560 + (TATG)n Simple_repeat Simple_repeat 2 35 0 272 230 34 14 chr6 129463701 129463849 -52951393 + (TA)n Simple_repeat Simple_repeat 2 152 0 338 60 0 20 chr6 129464008 129464058 -52951184 + (TG)n Simple_repeat Simple_repeat 2 50 0 1182 240 63 25 chr6 129464073 129464390 -52950852 + MLT1C LTR MaLR 62 390 -77 892 124 12 37 chr6 129464698 129464859 -52950383 + MLT2C2 LTR ERVL 1 157 -307 228 216 59 0 chr6 129464879 129464930 -52950312 + L1MC4 LINE L1 6650 6703 -1339 27 49 0 0 chr6 129465488 129465529 -52949713 + AT_rich Low_complexity Low_complexity 1 41 0 522 57 0 0 chr6 129465553 129465623 -52949619 + (CA)n Simple_repeat Simple_repeat 1 70 0 2230 119 0 0 chr6 129466384 129466686 -52948556 - AluSx SINE Alu -10 302 1 2442 98 28 92 chr6 129466717 129467174 -52948068 - MSTA LTR MaLR 0 428 1 351 0 0 0 chr6 129467799 129467838 -52947404 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1222 232 69 35 chr6 129468285 129468660 -52946582 + LTR52 LTR ERVL 24 411 -10 2667 241 41 13 chr6 129468660 129469292 -52945950 + LTR52-int LTR ERVL 7 656 -2900 738 209 34 0 chr6 129469306 129469454 -52945788 + LTR52-int LTR ERVL 817 969 -2587 882 191 18 9 chr6 129469462 129469770 -52945472 + GA-rich Low_complexity Low_complexity 1 310 0 626 208 19 72 chr6 129469915 129470333 -52944909 + MER4C LTR ERV1 2 465 0 221 56 0 28 chr6 129470349 129470385 -52944857 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1867 142 0 7 chr6 129470396 129470671 -52944571 - AluSx SINE Alu -37 275 3 1390 226 56 29 chr6 129470672 129471048 -52944194 + LTR52-int LTR ERVL 1181 1566 -4119 1088 308 61 11 chr6 129471057 129471417 -52943825 + LTR52-int LTR ERVL 2462 2839 -717 2518 143 0 49 chr6 129471418 129471865 -52943377 + MER41B LTR ERV1 1 425 -210 1595 190 18 0 chr6 129471845 129472129 -52943113 - LTR57 LTR ERVL -122 289 1 * 200 244 0 0 chr6 129473018 129473059 -52942183 + L3 LINE CR1 1528 1568 -9 1330 212 72 0 chr6 129473309 129473416 -52941826 + AluJo SINE Alu 9 107 -205 402 21 0 0 chr6 129473416 129473463 -52941779 + (CA)n Simple_repeat Simple_repeat 2 48 0 1330 212 72 0 chr6 129473463 129473633 -52941609 + AluJo SINE Alu 107 306 -6 28 48 0 0 chr6 129473890 129473932 -52941310 + AT_rich Low_complexity Low_complexity 1 42 0 1492 291 40 34 chr6 129473988 129474892 -52940350 + L1MB1 LINE L1 1607 2115 -5371 5221 124 47 26 chr6 129475048 129475985 -52939257 + MER11B LTR ERVK 1 1086 -150 2654 245 91 38 chr6 129476003 129476211 -52939031 + L1MB1 LINE L1 2117 2312 -5253 2002 110 3 61 chr6 129476211 129476539 -52938703 + AluSc SINE Alu 1 309 0 2654 245 91 38 chr6 129476539 129477732 -52937510 + L1MB1 LINE L1 2312 3358 -4207 484 29 15 0 chr6 129477733 129477801 -52937441 + AluY SINE Alu 1 69 -241 2003 118 0 11 chr6 129477945 129478224 -52937018 - AluSq SINE Alu -35 278 3 198 0 0 0 chr6 129478258 129478280 -52936962 + (CA)n Simple_repeat Simple_repeat 1 22 0 362 262 59 36 chr6 129478288 129478509 -52936733 + L1MB1 LINE L1 3391 3616 -3951 9614 120 27 31 chr6 129478513 129480719 -52934523 - L1PA7 LINE L1 -3936 2525 294 * 14282 94 23 37 chr6 129480714 129482984 -52932258 + L1PA7 LINE L1 2517 4756 -1705 5287 67 9 1 chr6 129482984 129483670 -52931572 + L1PA7 LINE L1 5767 6458 -11 531 236 57 0 chr6 129483674 129483831 -52931411 + L1MB1 LINE L1 3629 3794 -3771 6283 131 11 0 chr6 129483835 129484833 -52930409 - L1PA8 LINE L1 -979 5167 4159 6098 98 24 1 chr6 129484828 129485782 -52929460 + L1PA8 LINE L1 5162 6132 -40 * 5018 249 43 12 chr6 129485789 129487422 -52927820 + L1MB1 LINE L1 3786 5469 -2096 4105 200 34 18 chr6 129487417 129488858 -52926384 + L1MB1 LINE L1 6115 7580 -7 * 22 0 0 0 chr6 129488865 129488887 -52926355 + AT_rich Low_complexity Low_complexity 1 22 0 225 368 81 0 chr6 129489018 129489105 -52926137 + L2 LINE L2 3134 3227 -45 198 354 140 46 chr6 129489169 129490131 -52925111 + L2 LINE L2 1822 2891 -423 445 99 113 0 chr6 129490131 129490202 -52925040 - MADE1 DNA Mariner 0 80 2 198 354 140 46 chr6 129490202 129490284 -52924958 + L2 LINE L2 2891 2964 -350 1016 178 0 0 chr6 129490555 129490718 -52924524 - FRAM SINE Alu -14 162 1 21 36 0 0 chr6 129491430 129491458 -52923784 + AT_rich Low_complexity Low_complexity 1 28 0 2148 92 14 0 chr6 129493947 129494242 -52921000 - AluSx SINE Alu -13 299 1 24 53 0 0 chr6 129494524 129494562 -52920680 + AT_rich Low_complexity Low_complexity 1 38 0 457 305 114 41 chr6 129496557 129496924 -52918318 - MLT1I LTR MaLR -15 394 1 22 0 0 0 chr6 129496943 129496965 -52918277 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr6 129497271 129497307 -52917935 + AT_rich Low_complexity Low_complexity 1 36 0 352 259 38 57 chr6 129497404 129497562 -52917680 + L1MC4a LINE L1 2869 3023 -3123 305 254 98 43 chr6 129497598 129497854 -52917388 + L1MC4a LINE L1 3130 3399 -2747 32 26 0 0 chr6 129498249 129498288 -52916954 + AT_rich Low_complexity Low_complexity 1 39 0 287 281 129 28 chr6 129498418 129498596 -52916646 + L1MC4a LINE L1 5589 5784 -2024 323 313 0 0 chr6 129498722 129498850 -52916392 + (TA)n Simple_repeat Simple_repeat 2 129 0 36 53 0 0 chr6 129499031 129499088 -52916154 + AT_rich Low_complexity Low_complexity 1 57 0 2170 86 10 0 chr6 129499132 129499423 -52915819 + AluY SINE Alu 1 294 -17 566 14 14 0 chr6 129499427 129499498 -52915744 + (CATAA)n Simple_repeat Simple_repeat 4 75 0 23 0 0 0 chr6 129499498 129499521 -52915721 + AT_rich Low_complexity Low_complexity 1 23 0 204 97 0 0 chr6 129500017 129500048 -52915194 + (T)n Simple_repeat Simple_repeat 1 31 0 8809 154 29 14 chr6 129500670 129502246 -52912996 - Tigger1 DNA MER2_type -819 1599 1 1687 189 0 16 chr6 129503487 129503668 -52911574 - AluJo SINE Alu -4 308 133 189 0 0 0 chr6 129503668 129503689 -52911553 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 1687 189 0 16 chr6 129503689 129503820 -52911422 - AluJo SINE Alu -179 133 1 365 234 196 0 chr6 129503947 129504054 -52911188 + AluJb SINE Alu 175 302 0 729 308 187 12 chr6 129506099 129506505 -52908737 + L2 LINE L2 2238 2714 -600 1671 190 56 39 chr6 129506541 129506951 -52908291 + L1MA8 LINE L1 5872 6288 -3 581 323 164 15 chr6 129506960 129507464 -52907778 + L2 LINE L2 2710 3312 -1 24 0 0 0 chr6 129508107 129508131 -52907111 + AT_rich Low_complexity Low_complexity 1 24 0 237 228 87 103 chr6 129508323 129508507 -52906735 + L1MC4a LINE L1 5824 6004 -1804 244 298 94 52 chr6 129509521 129509712 -52905530 + HAL1 LINE L1 1448 1646 -861 22 0 0 0 chr6 129510121 129510143 -52905099 + AT_rich Low_complexity Low_complexity 1 22 0 2101 137 0 7 chr6 129510189 129510496 -52904746 + AluSx SINE Alu 1 305 -7 24 67 0 0 chr6 129510860 129510905 -52904337 + AT_rich Low_complexity Low_complexity 1 45 0 345 271 75 75 chr6 129511385 129512068 -52903174 + L1M4 LINE L1 3118 3800 -2346 983 265 0 9 chr6 129512976 129513191 -52902051 + Charlie1b DNA MER1_type 1 213 -310 6047 184 23 20 chr6 129513207 129515489 -52899753 + L1PA16 LINE L1 3883 6162 -4 350 213 0 32 chr6 129515494 129515588 -52899654 + Charlie1b DNA MER1_type 210 300 -223 2369 178 34 22 chr6 129515656 129516155 -52899087 - L1MA7 LINE L1 -419 5872 5368 8656 166 8 28 chr6 129516167 129519021 -52896221 - L1MA2 LINE L1 -82 6222 3428 3888 132 20 37 chr6 129519030 129519740 -52895502 - L1MA4 LINE L1 -345 5955 5258 1092 146 18 46 chr6 129519740 129519959 -52895283 - L1MA4 LINE L1 -1427 4719 4507 3277 43 0 0 chr6 129520357 129520752 -52894490 - L1PA5 LINE L1 -1 6153 5759 2823 46 6 0 chr6 129520752 129521097 -52894145 + L1PA5 LINE L1 5388 5734 -420 260 221 188 34 chr6 129521913 129521963 -52893279 - LTR37A LTR ERV1 0 426 385 1868 204 73 18 chr6 129521963 129522400 -52892842 + LOR1b LTR ERV1 1 461 0 260 221 188 34 chr6 129522400 129522498 -52892744 - LTR37A LTR ERV1 -41 385 255 477 208 30 0 chr6 129522869 129522970 -52892272 + LTR60 LTR ERV1 3 106 -480 630 208 40 64 chr6 129523013 129523186 -52892056 + LTR60 LTR ERV1 111 279 -307 1321 211 16 19 chr6 129523186 129523508 -52891734 + LTR60 LTR ERV1 229 549 -37 1302 155 0 114 chr6 129523332 129523673 -52891569 + TAR1 Satellite telomeric 2 303 -1808 * 696 370 41 11 chr6 129527318 129527783 -52887459 - LTR33 LTR ERVL -28 493 15 553 100 0 0 chr6 129528150 129528230 -52887012 - MADE1 DNA Mariner 0 80 1 336 102 0 0 chr6 129528280 129528329 -52886913 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 298 207 30 30 chr6 129528299 129528434 -52886808 + GA-rich Low_complexity Low_complexity 5 139 0 * 2707 141 21 8 chr6 129528435 129528480 -52886762 + L1P4 LINE L1 5318 5361 -800 2355 138 13 0 chr6 129528480 129528858 -52886384 - L1PA13 LINE L1 -13 6150 5768 2707 141 21 8 chr6 129528858 129529280 -52885962 + L1PA13 LINE L1 5361 5791 -370 21 0 0 0 chr6 129529284 129529305 -52885937 + AT_rich Low_complexity Low_complexity 1 21 0 254 368 97 38 chr6 129529313 129529737 -52885505 + L2 LINE L2 2373 2821 -493 258 340 75 7 chr6 129530466 129530613 -52884629 - MARNA DNA Mariner -131 455 299 701 157 60 42 chr6 129530771 129530973 -52884269 - MLT1B LTR MaLR -191 183 1 21 0 0 0 chr6 129531788 129531809 -52883433 + AT_rich Low_complexity Low_complexity 1 21 0 406 357 38 19 chr6 129531881 129532144 -52883098 + L2 LINE L2 2051 2318 -996 785 278 102 19 chr6 129533320 129533752 -52881490 - L1MCc LINE L1 -2045 4896 4429 609 141 23 119 chr6 129533798 129533975 -52881267 - L1MA4 LINE L1 -7 6293 6134 7593 20 0 0 chr6 129533976 129535009 -52880233 - L1PA4 LINE L1 -4 6151 5118 10642 29 2 8 chr6 129535009 129536304 -52878938 + L1PA4 LINE L1 3807 5094 -1052 464 156 0 0 chr6 129536306 129536383 -52878859 - L1MA4A LINE L1 -137 6166 6090 * 865 271 56 55 chr6 129536378 129536964 -52878278 - L1MCc LINE L1 -2581 4360 3774 576 267 109 37 chr6 129536956 129537279 -52877963 - L1MCc LINE L1 -4766 2175 1877 * 2127 106 26 57 chr6 129537279 129537665 -52877577 - THE1C LTR MaLR 0 375 2 576 267 109 37 chr6 129537665 129538196 -52877046 - L1MCc LINE L1 -5064 1877 1253 310 299 37 22 chr6 129538786 129538920 -52876322 - L1MCc LINE L1 -6034 389 254 2078 141 0 0 chr6 129539524 129539822 -52875420 - AluSx SINE Alu -14 298 1 21 0 0 0 chr6 129539833 129539854 -52875388 + AT_rich Low_complexity Low_complexity 1 21 0 28 91 0 0 chr6 129540527 129540604 -52874638 + AT_rich Low_complexity Low_complexity 1 77 0 12858 162 32 0 chr6 129540740 129544047 -52871195 + L1PA13 LINE L1 2776 6144 -19 1087 174 0 75 chr6 129544316 129544557 -52870685 + AluJb SINE Alu 88 310 -2 271 198 12 123 chr6 129544948 129545029 -52870213 - MER33 DNA MER1_type -251 73 2 2082 75 21 14 chr6 129545292 129545615 -52869627 + AluSp SINE Alu 1 325 0 417 360 21 16 chr6 129545676 129545862 -52869380 - MER5A DNA MER1_type 0 189 3 371 276 73 52 chr6 129546055 129546247 -52868995 - HAL1 LINE L1 -1429 1078 883 21 57 0 0 chr6 129546811 129546846 -52868396 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 129547791 129547819 -52867423 + AT_rich Low_complexity Low_complexity 1 28 0 562 261 19 13 chr6 129547819 129547976 -52867266 + L1MDa LINE L1 16 173 -6367 543 310 70 14 chr6 129547993 129548206 -52867036 - L1MDa LINE L1 -5554 986 762 * 741 221 98 101 chr6 129548204 129548530 -52866712 + L1MDa LINE L1 170 494 -6046 1435 180 116 3 chr6 129548548 129548859 -52866383 + MER52A LTR ERV1 1410 1755 0 940 290 107 14 chr6 129548866 129549211 -52866031 + L1MDa LINE L1 702 1078 -5462 41395 63 4 1 chr6 129549217 129555343 -52859899 + L1PA5 LINE L1 2 6148 -6 4495 238 89 21 chr6 129555339 129557754 -52857488 + L1MDa LINE L1 1066 3734 -2806 * 216 67 0 0 chr6 129557754 129557784 -52857458 + (CA)n Simple_repeat Simple_repeat 2 31 0 4495 238 89 21 chr6 129557784 129558405 -52856837 + L1MDa LINE L1 3734 4311 -2229 2251 274 18 31 chr6 129558698 129559592 -52855650 + L1MDa LINE L1 4360 5241 -1299 26 74 0 0 chr6 129560114 129560168 -52855074 + AT_rich Low_complexity Low_complexity 1 54 0 241 376 91 38 chr6 129562662 129563058 -52852184 - L3b LINE CR1 -41 1542 1126 237 320 177 0 chr6 129563707 129563854 -52851388 + L1MEc LINE L1 15 187 -6209 466 269 60 0 chr6 129564054 129564203 -52851039 + L1MEc LINE L1 1636 1793 -4603 26 30 0 0 chr6 129566970 129567003 -52848239 + AT_rich Low_complexity Low_complexity 1 33 0 642 319 17 33 chr6 129567162 129567403 -52847839 + MIR SINE MIR 23 259 -3 580 235 48 5 chr6 129567880 129568067 -52847175 - L1M4 LINE L1 -3646 2998 2804 452 286 88 0 chr6 129568059 129568206 -52847036 - L1M4 LINE L1 -4836 1810 1651 * 2026 269 22 2 chr6 129568208 129568672 -52846570 - MER70B LTR ERVL 0 578 106 302 264 0 14 chr6 129568683 129568755 -52846487 - MER70B LTR ERVL -416 162 92 2331 148 12 10 chr6 129568756 129569156 -52846086 - L1PA11 LINE L1 -896 5250 4850 5604 113 53 5 chr6 129569165 129570043 -52845199 + L1PA11 LINE L1 5254 6174 0 558 198 0 0 chr6 129570055 129570151 -52845091 - MER70A LTR ERVL -376 96 1 1533 259 26 30 chr6 129570151 129570727 -52844515 - L1M4 LINE L1 -4887 1655 1082 22 0 0 0 chr6 129571160 129571182 -52844060 + AT_rich Low_complexity Low_complexity 1 22 0 1532 92 0 31 chr6 129571851 129572080 -52843162 + L1PA5 LINE L1 5931 6152 -2 38 0 0 0 chr6 129572396 129572434 -52842808 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 129572568 129572589 -52842653 + AT_rich Low_complexity Low_complexity 1 21 0 502 239 18 0 chr6 129572644 129572753 -52842489 - Tigger3(Golem) DNA MER2_type -1 3028 2918 25 0 0 0 chr6 129572757 129572782 -52842460 + AT_rich Low_complexity Low_complexity 1 25 0 417 161 25 37 chr6 129572891 129572972 -52842270 - Tigger3(Golem) DNA MER2_type -2949 80 1 1802 158 31 0 chr6 129573038 129573330 -52841912 - AluJb SINE Alu -11 301 1 21 0 0 0 chr6 129573332 129573353 -52841889 + AT_rich Low_complexity Low_complexity 1 21 0 719 217 30 49 chr6 129573411 129573614 -52841628 + Charlie1a DNA MER1_type 13 211 -1244 338 159 14 0 chr6 129573614 129573683 -52841559 + (TA)n Simple_repeat Simple_repeat 1 70 0 2462 227 32 17 chr6 129573687 129574706 -52840536 - L1MC/D LINE L1 -576 6177 5149 * 2533 244 64 103 chr6 129574697 129575350 -52839892 - L1MDa LINE L1 -1980 4560 3883 891 210 0 0 chr6 129575350 129575517 -52839725 - FRAM SINE Alu -8 168 2 2533 244 64 103 chr6 129575517 129575695 -52839547 - L1MDa LINE L1 -2657 3883 3699 2024 115 4 0 chr6 129575695 129575973 -52839269 - AluSg SINE Alu -31 279 1 2533 244 64 103 chr6 129575973 129577139 -52838103 - L1MDa LINE L1 -2841 3699 2514 2172 99 3 0 chr6 129577139 129577479 -52837763 - AluSp SINE Alu 0 341 1 2533 244 64 103 chr6 129577479 129577778 -52837464 - L1MDa LINE L1 -4026 2514 2205 352 208 0 0 chr6 129577775 129577847 -52837395 - L1MB8 LINE L1 -263 5915 5844 * 284 224 24 35 chr6 129577862 129577877 -52837365 - MER46A DNA MER2_type -78 158 145 1297 180 108 36 chr6 129577877 129578211 -52837031 + MER46B DNA MER2_type 2 234 -2 1004 191 15 5 chr6 129578352 129578556 -52836686 - MLT2C2 LTR ERVL -258 206 1 2269 210 27 6 chr6 129578556 129579115 -52836127 - L1MB8 LINE L1 -409 5775 5210 742 126 0 16 chr6 129579135 129579262 -52835980 - HERVH LTR ERV1 -3873 3840 3716 615 62 0 0 chr6 129579262 129579343 -52835899 - LTR7 LTR ERV1 -369 81 1 2414 84 48 13 chr6 129579343 129579722 -52835520 - HERVH LTR ERV1 0 7713 7322 1348 121 23 9 chr6 129579720 129579935 -52835307 - HERVH LTR ERV1 -1894 5819 5602 * 4365 135 3 1 chr6 129579938 129580599 -52834643 - HERVH LTR ERV1 -2564 5149 4488 3295 123 0 6 chr6 129580601 129581106 -52834136 - HERVH LTR ERV1 -3720 3993 3492 * 19878 90 63 39 chr6 129581096 129584309 -52830933 - HERVH LTR ERV1 -4423 3290 1 3397 60 0 7 chr6 129584311 129584762 -52830480 - LTR7 LTR ERV1 -2 448 1 307 316 13 0 chr6 129585083 129585162 -52830080 + MIR3 SINE MIR 98 177 -31 1579 174 33 11 chr6 129586096 129586372 -52828870 + AluJb SINE Alu 11 292 -20 249 320 93 10 chr6 129586564 129586661 -52828581 + L2 LINE L2 3151 3255 -17 225 271 178 8 chr6 129587064 129587193 -52828049 - MIR SINE MIR -106 156 6 25 65 0 0 chr6 129587427 129587473 -52827769 + AT_rich Low_complexity Low_complexity 1 46 0 350 286 64 21 chr6 129587573 129587713 -52827529 - L1ME1 LINE L1 -5 6161 6016 882 231 33 81 chr6 129587721 129588168 -52827074 + MER52A LTR ERV1 274 1229 -141 255 297 14 97 chr6 129588430 129588575 -52826667 + MER52A LTR ERV1 1338 1470 -285 244 296 56 9 chr6 129588593 129588701 -52826541 + MER52A LTR ERV1 1643 1755 0 474 324 24 8 chr6 129588949 129589199 -52826043 - L1ME LINE L1 -4906 1636 1383 398 293 22 28 chr6 129589288 129589469 -52825773 - L1ME LINE L1 -5602 1032 853 27 0 0 0 chr6 129589654 129589681 -52825561 + AT_rich Low_complexity Low_complexity 1 27 0 672 200 0 0 chr6 129589802 129589927 -52825315 - FLAM_A SINE Alu -10 132 8 339 321 47 28 chr6 129590081 129590293 -52824949 - L1ME1 LINE L1 -281 5889 5674 22 56 0 0 chr6 129590836 129590872 -52824370 + AT_rich Low_complexity Low_complexity 1 36 0 360 240 10 0 chr6 129591130 129591234 -52824008 - L1M4 LINE L1 -2678 3468 3364 911 206 0 0 chr6 129591235 129591395 -52823847 + AluJb SINE Alu 126 285 -27 388 312 68 38 chr6 129591508 129591771 -52823471 - L1M4 LINE L1 -3016 3130 2860 4795 159 33 9 chr6 129591775 129592746 -52822496 - L1MB1 LINE L1 0 6404 5412 4570 231 127 9 chr6 129592748 129594330 -52820912 - L1MB1 LINE L1 -1567 4815 3048 2521 287 58 17 chr6 129594347 129596217 -52819025 - L1MB1 LINE L1 -3592 2790 777 1333 304 41 47 chr6 129596609 129597265 -52817977 - L1M3de LINE L1 -5205 686 1 352 318 23 28 chr6 129597297 129597514 -52817728 - L1 LINE L1 -3292 2854 2639 39 22 0 0 chr6 129597542 129597588 -52817654 + AT_rich Low_complexity Low_complexity 1 46 0 277 292 170 12 chr6 129598409 129598580 -52816662 + L2 LINE L2 3114 3311 -2 501 267 57 54 chr6 129599109 129599461 -52815781 + L1ME3A LINE L1 3587 3939 -2207 559 261 43 30 chr6 129600011 129600448 -52814794 + L1ME3A LINE L1 5603 6165 -5 958 238 25 73 chr6 129600458 129600773 -52814469 + L2 LINE L2 2445 2744 -570 1944 180 28 28 chr6 129600773 129601137 -52814105 + MLT2D LTR ERVL 1 364 -50 900 192 0 0 chr6 129601137 129601288 -52813954 + Tigger1 DNA MER2_type 1 151 -2267 * 1096 143 107 0 chr6 129601284 129601480 -52813762 + Tigger1 DNA MER2_type 2202 2418 0 889 303 119 29 chr6 129601533 129602054 -52813188 + L2 LINE L2 2744 3313 0 2094 108 0 0 chr6 129604113 129604401 -52810841 + AluSx SINE Alu 23 310 -2 24 53 0 0 chr6 129605737 129605775 -52809467 + AT_rich Low_complexity Low_complexity 1 38 0 996 184 45 0 chr6 129605775 129605976 -52809266 - MER2 DNA MER2_type -135 210 1 297 216 137 49 chr6 129606109 129606211 -52809031 - MLT1J LTR MaLR -44 467 357 35 71 0 0 chr6 129608257 129608327 -52806915 + AT_rich Low_complexity Low_complexity 1 70 0 646 214 0 14 chr6 129608568 129608708 -52806534 - FLAM_C SINE Alu -5 138 1 1573 126 6 123 chr6 129609280 129609621 -52805621 - AluSx SINE Alu 0 302 2 26 64 0 0 chr6 129610041 129610088 -52805154 + AT_rich Low_complexity Low_complexity 1 47 0 186 191 0 0 chr6 129610141 129610183 -52805059 + T-rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr6 129610525 129610567 -52804675 + AT_rich Low_complexity Low_complexity 1 42 0 2359 86 3 0 chr6 129611351 129611652 -52803590 + AluSc SINE Alu 1 302 -7 27 29 0 0 chr6 129612064 129612098 -52803144 + AT_rich Low_complexity Low_complexity 1 34 0 1541 234 44 25 chr6 129614467 129614873 -52800369 - MLT2D LTR ERVL 0 414 1 756 206 17 116 chr6 129614980 129615058 -52800184 + L1M4 LINE L1 16 100 -6442 2070 129 3 0 chr6 129615058 129615361 -52799881 - AluSq SINE Alu -9 304 1 756 206 17 116 chr6 129615361 129615583 -52799659 + L1M4 LINE L1 100 286 -6256 5487 132 41 4 chr6 129665875 129666973 -52748269 + L1PB2 LINE L1 5010 6145 -6 190 354 26 46 chr6 129667192 129667387 -52747855 + L2 LINE L2 2420 2610 -704 22 35 0 0 chr6 129668247 129668276 -52746966 + AT_rich Low_complexity Low_complexity 1 29 0 707 65 0 22 chr6 129669606 129669698 -52745544 + 5S rRNA rRNA 1 90 -31 1922 137 51 3 chr6 129670017 129670332 -52744910 + L1PA15 LINE L1 5827 6156 -9 42423 37 22 2 chr6 129671725 129677752 -52737490 + L1PA3 LINE L1 1 6154 -1 21 0 0 0 chr6 129678118 129678139 -52737103 + AT_rich Low_complexity Low_complexity 1 21 0 294 345 95 0 chr6 129678870 129678986 -52736256 + MIR SINE MIR 18 144 -118 2339 73 0 10 chr6 129679011 129679313 -52735929 - AluY SINE Alu -12 299 1 3040 121 24 20 chr6 129679389 129679892 -52735350 - MER84 LTR ERV1 0 507 3 372 341 0 15 chr6 129679948 129680083 -52735159 - MIR SINE MIR -112 150 18 353 293 83 38 chr6 129680192 129680458 -52734784 + L1MC4 LINE L1 7207 7484 -558 1754 262 18 6 chr6 129680482 129680994 -52734248 + L1M4 LINE L1 4592 5109 -1037 23 0 0 0 chr6 129681307 129681330 -52733912 + AT_rich Low_complexity Low_complexity 1 23 0 211 276 0 53 chr6 129681395 129681471 -52733771 + MIR SINE MIR 190 261 -1 197 255 64 67 chr6 129681495 129681603 -52733639 + MIR SINE MIR 42 147 -61 21 0 0 0 chr6 129681731 129681752 -52733490 + AT_rich Low_complexity Low_complexity 1 21 0 267 355 35 5 chr6 129681764 129681964 -52733278 + L1M4 LINE L1 2409 2614 -3532 711 276 114 36 chr6 129682138 129682824 -52732418 + L1M4 LINE L1 2645 3383 -2763 685 338 23 41 chr6 129683117 129683505 -52731737 - MLT1J LTR MaLR -125 386 6 2305 80 27 3 chr6 129684225 129684524 -52730718 - AluY SINE Alu -5 306 1 2061 128 7 0 chr6 129684648 129684937 -52730305 + AluJb SINE Alu 1 291 -21 236 53 35 35 chr6 129685041 129685098 -52730144 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1259 233 243 32 chr6 129685611 129686134 -52729108 + MLT1E1 LTR MaLR 18 650 -4 277 300 86 7 chr6 129686145 129686425 -52728817 + HAL1b LINE L1 712 1013 -335 377 284 11 6 chr6 129686713 129686825 -52728417 - MIR SINE MIR -63 145 49 3213 153 57 26 chr6 129687216 129687274 -52727968 + Tigger2 DNA MER2_type 2 57 -2661 306 0 0 0 chr6 129687274 129687308 -52727934 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 387 0 0 0 chr6 129687307 129687350 -52727892 + (GA)n Simple_repeat Simple_repeat 2 44 0 3213 153 57 26 chr6 129687308 129687641 -52727601 + Tigger2 DNA MER2_type 57 383 -2335 1920 133 14 3 chr6 129687641 129687935 -52727307 + AluSx SINE Alu 4 300 -12 3213 153 57 26 chr6 129687935 129688229 -52727013 + Tigger2 DNA MER2_type 383 666 -2052 653 139 56 0 chr6 129688225 129688333 -52726909 + Tigger2 DNA MER2_type 2605 2718 0 * 658 322 130 34 chr6 129688348 129689344 -52725898 - L2 LINE L2 0 3313 2233 1449 291 13 13 chr6 129689359 129690282 -52724960 - L1MCa LINE L1 -2521 4043 2908 807 188 185 13 chr6 129690300 129690614 -52724628 - L1MCa LINE L1 -4003 2561 2194 546 187 71 0 chr6 129690636 129690791 -52724451 - L1MCa LINE L1 -4425 2139 1974 * 2267 290 48 13 chr6 129690790 129691558 -52723684 - L1MCa LINE L1 -5246 799 5 666 341 58 20 chr6 129691586 129691982 -52723260 - L2 LINE L2 -1102 2212 1802 2151 123 10 3 chr6 129692199 129692509 -52722733 - AluSx SINE Alu 0 312 1 22 35 0 0 chr6 129694644 129694673 -52720569 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 129694884 129694907 -52720335 + AT_rich Low_complexity Low_complexity 1 23 0 187 318 0 45 chr6 129695001 129695067 -52720175 - MIR SINE MIR -124 84 22 3405 183 28 160 chr6 129695284 129696542 -52718700 - MER52A LTR ERV1 -3 1752 662 3883 245 68 64 chr6 129696542 129698287 -52716955 - MER52A LTR ERV1 0 1755 3 1209 215 179 18 chr6 129698301 129698814 -52716428 - MER52A LTR ERV1 -1090 665 1 208 220 68 119 chr6 129698975 129699093 -52716149 - MIR SINE MIR -4 258 147 3318 159 25 27 chr6 129699098 129700023 -52715219 - L1M2 LINE L1 -663 5637 4724 431 278 29 76 chr6 129700154 129700364 -52714878 - MIR SINE MIR -19 243 45 189 0 0 0 chr6 129700439 129700460 -52714782 + (CAA)n Simple_repeat Simple_repeat 1 21 0 376 325 66 10 chr6 129700700 129700897 -52714345 + LTR16C LTR ERVL 253 460 -31 434 49 16 0 chr6 129701054 129701115 -52714127 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 283 338 184 10 chr6 129703693 129703900 -52711342 - MIR SINE MIR 0 262 20 1845 166 30 28 chr6 129704445 129704873 -52710369 - L1MA7 LINE L1 -9 7242 6814 259 222 49 12 chr6 129704873 129704954 -52710288 - L1MA7 LINE L1 -774 6477 6394 35 0 0 0 chr6 129704954 129704989 -52710253 + AT_rich Low_complexity Low_complexity 1 35 0 8196 139 21 11 chr6 129704989 129707427 -52707815 - L1MA2 LINE L1 -22 6282 3820 * 8439 241 75 24 chr6 129707425 129709998 -52705244 - L1MA7 LINE L1 -1763 5343 2904 4471 141 27 14 chr6 129709998 129710852 -52704390 + L1MA8 LINE L1 5423 6287 -4 8439 241 75 24 chr6 129710852 129711086 -52704156 - L1MA7 LINE L1 -4202 2904 2683 1742 174 49 30 chr6 129711086 129711454 -52703788 + THE1C LTR MaLR 1 375 0 8439 241 75 24 chr6 129711454 129713124 -52702118 - L1MA7 LINE L1 -4423 2683 923 526 292 28 0 chr6 129713124 129713268 -52701974 - L1MA7 LINE L1 -6659 371 224 * 3483 143 30 0 chr6 129713262 129713872 -52701370 - L1MC1 LINE L1 -427 5906 5279 23 0 0 0 chr6 129714403 129714426 -52700816 + AT_rich Low_complexity Low_complexity 1 23 0 383 350 113 32 chr6 129715128 129715560 -52699682 - L3 LINE CR1 -318 1259 793 718 138 0 0 chr6 129715746 129715862 -52699380 - L1MA4 LINE L1 -6 6294 6179 358 171 0 0 chr6 129715877 129715953 -52699289 - L1MA4 LINE L1 -217 6083 6008 24 53 0 0 chr6 129715960 129715998 -52699244 + AT_rich Low_complexity Low_complexity 1 38 0 842 282 41 55 chr6 129717501 129717863 -52697379 - MLT1G1 LTR MaLR -163 432 76 336 228 78 147 chr6 129717892 129718239 -52697003 - MLT1G1-int LTR MaLR -17 1354 1032 498 306 82 0 chr6 129718659 129718865 -52696377 - MLT1G1-int LTR MaLR -820 551 329 6919 51 16 5 chr6 129718885 129719770 -52695472 - L1PA5 LINE L1 0 6154 5260 5923 36 3 1 chr6 129719769 129720509 -52694733 + L1P LINE L1 2509 3249 -2897 * 2191 122 0 0 chr6 129720976 129721271 -52693971 + AluSx SINE Alu 1 295 -17 276 77 0 0 chr6 129722272 129722311 -52692931 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4970 24 0 0 chr6 129722441 129723022 -52692220 - L1P LINE L1 -1783 4363 3783 2398 31 1 0 chr6 129723021 129723857 -52691385 + L1PA3 LINE L1 5219 6206 0 * 634 279 22 11 chr6 129724647 129724830 -52690412 - MIR SINE MIR -5 257 73 216 0 0 0 chr6 129725439 129725463 -52689779 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 866 205 27 5 chr6 129726824 129727009 -52688233 - MER5A DNA MER1_type 0 189 1 23 86 0 0 chr6 129727089 129727147 -52688095 + AT_rich Low_complexity Low_complexity 1 58 0 263 210 12 74 chr6 129727164 129727245 -52687997 + MER103 DNA DNA 84 159 -7 1909 120 4 0 chr6 129727370 129727636 -52687606 + AluSq SINE Alu 32 298 -15 692 234 0 25 chr6 129728340 129728470 -52686772 + MLT1D LTR MaLR 1 126 -379 2002 169 43 47 chr6 129728470 129729010 -52686232 - MLT2A2 LTR ERVL 0 554 1 595 259 19 44 chr6 129729010 129729215 -52686027 + MLT1D LTR MaLR 125 324 -181 243 0 0 0 chr6 129729215 129729242 -52686000 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2455 59 3 0 chr6 129729450 129729754 -52685488 + AluY SINE Alu 1 305 -6 24 77 0 0 chr6 129729974 129730026 -52685216 + AT_rich Low_complexity Low_complexity 1 52 0 226 234 47 31 chr6 129730063 129730127 -52685115 + L2 LINE L2 3204 3268 -4 367 281 82 19 chr6 129730362 129730629 -52684613 - L1ME LINE L1 -302 5819 5536 23 0 0 0 chr6 129730864 129730887 -52684355 + AT_rich Low_complexity Low_complexity 1 23 0 248 353 8 41 chr6 129732543 129732665 -52682577 - MIR SINE MIR -61 147 30 464 305 79 20 chr6 129732799 129733002 -52682240 + MIR SINE MIR 48 262 0 929 292 80 11 chr6 129735532 129735881 -52679361 + LTR16A LTR ERVL 29 401 -49 1184 299 47 13 chr6 129735886 129736267 -52678975 + HERV16 LTR ERVL 55 448 -4548 1580 268 19 58 chr6 129736288 129736836 -52678406 + L1M4b LINE L1 11 594 -6265 241 303 0 0 chr6 129737679 129737761 -52677481 - MLT1J1 LTR MaLR -304 142 81 1679 204 3 10 chr6 129737891 129738190 -52677052 - AluJb SINE Alu -15 297 1 538 339 23 0 chr6 129738377 129738554 -52676688 + MIR SINE MIR 53 233 -29 23 86 0 0 chr6 129738609 129738667 -52676575 + AT_rich Low_complexity Low_complexity 1 58 0 339 369 16 8 chr6 129739794 129739916 -52675326 - L2 LINE L2 0 3272 3150 257 182 0 55 chr6 129740209 129740264 -52674978 + L2 LINE L2 3262 3313 0 1242 112 0 0 chr6 129741171 129741358 -52673884 - L1PA3 LINE L1 -4 6151 5965 2702 18 25 0 chr6 129741358 129741684 -52673558 + L1P LINE L1 4178 4511 -1635 1957 204 108 10 chr6 129741681 129742172 -52673070 - L1MD3 LINE L1 -23 7972 7434 * 327 273 39 0 chr6 129742173 129742250 -52672992 - MLT1F1 LTR MaLR -433 134 55 285 305 24 0 chr6 129742586 129742668 -52672574 + MER94 DNA DNA 4 87 -47 345 335 30 42 chr6 129742894 129743130 -52672112 + Charlie8 DNA MER1_type 5 237 -2180 472 298 6 22 chr6 129743519 129743700 -52671542 + MER5B DNA MER1_type 1 178 0 22 56 0 0 chr6 129744311 129744347 -52670895 + AT_rich Low_complexity Low_complexity 1 36 0 4021 161 4 8 chr6 129745303 129746009 -52669233 - L1PA16 LINE L1 -7 6159 5457 235 98 0 24 chr6 129746190 129746231 -52669011 - L1PA16 LINE L1 -7 6159 6120 4125 214 14 38 chr6 129746263 129747487 -52667755 - L1PA12 LINE L1 -4173 3411 2256 1145 323 23 49 chr6 129748325 129748935 -52666307 - L1PA12 LINE L1 -6192 1382 789 732 161 32 32 chr6 129750826 129751012 -52664230 + MER53 DNA DNA 1 186 -3 28 0 0 0 chr6 129752775 129752803 -52662439 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 129753008 129753044 -52662198 + AT_rich Low_complexity Low_complexity 1 36 0 7132 197 114 30 chr6 129754275 129755894 -52659348 + MER52A LTR ERV1 1 1755 0 238 216 0 0 chr6 129756622 129756673 -52658569 + A-rich Low_complexity Low_complexity 1 51 0 232 233 0 36 chr6 129756736 129756828 -52658414 + L1ME LINE L1 5263 5351 -826 234 322 82 44 chr6 129756852 129757035 -52658207 + L1ME LINE L1 5396 5585 -577 290 307 106 42 chr6 129757275 129757539 -52657703 + L2 LINE L2 3021 3301 -12 763 296 46 0 chr6 129758457 129758697 -52656545 - MIR SINE MIR 0 262 12 220 244 65 8 chr6 129759779 129759902 -52655340 + (CATATA)n Simple_repeat Simple_repeat 2 131 0 309 82 0 0 chr6 129759939 129759988 -52655254 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 311 91 0 0 chr6 129759999 129760043 -52655199 - L1P LINE L1 -1970 4176 4133 8521 97 9 18 chr6 129760098 129762143 -52653099 - L1PA7 LINE L1 -15 6139 4105 360 318 106 0 chr6 129762667 129762837 -52652405 + MIR SINE MIR 75 262 0 4286 189 22 34 chr6 129763302 129763440 -52651802 - L1MB1 LINE L1 0 6168 6030 2348 222 12 34 chr6 129763440 129764003 -52651239 - MLT2B3 LTR ERVL -2 552 2 4286 189 22 34 chr6 129764003 129765074 -52650168 - L1MB1 LINE L1 -138 6030 4966 21 36 0 0 chr6 129765286 129765314 -52649928 + AT_rich Low_complexity Low_complexity 1 28 0 7505 119 20 31 chr6 129766224 129767474 -52647768 - L1P LINE L1 -1775 4371 3136 1800 78 3 70 chr6 129767474 129767754 -52647488 + L1PA8A LINE L1 5867 6131 0 23 33 0 0 chr6 129768392 129768422 -52646820 + AT_rich Low_complexity Low_complexity 1 30 0 2799 22 0 0 chr6 129768586 129768903 -52646339 - AluYb8 SINE Alu -1 317 1 244 164 16 49 chr6 129769016 129769077 -52646165 - MER103 DNA DNA -7 159 101 380 150 44 25 chr6 129771005 129771165 -52644077 + (TATAA)n Simple_repeat Simple_repeat 5 167 0 376 314 23 40 chr6 129771178 129771353 -52643889 + L1MEc LINE L1 134 305 -6091 3273 138 39 2 chr6 129772529 129773078 -52642164 - L1M LINE L1 -809 5337 4790 * 5568 100 16 1 chr6 129773077 129773874 -52641368 + L1PA10 LINE L1 5344 6152 -16 4951 77 36 15 chr6 129774631 129774735 -52640507 - LTR12 LTR ERV1 0 688 588 2439 31 41 0 chr6 129774735 129775025 -52640217 + AluY SINE Alu 1 302 -9 4951 77 36 15 chr6 129775025 129775594 -52639648 - LTR12 LTR ERV1 -100 588 1 2915 189 63 21 chr6 129776438 129777117 -52638125 + MER67C LTR ERV1 1 708 -2 1239 276 58 40 chr6 129777117 129777859 -52637383 + L1M4 LINE L1 2844 3604 -2542 1938 151 7 0 chr6 129777859 129778157 -52637085 + AluSx SINE Alu 1 300 -12 1239 276 58 40 chr6 129778157 129778258 -52636984 + L1M4 LINE L1 3604 3702 -2444 1930 234 41 0 chr6 129778272 129778759 -52636483 + L1M2 LINE L1 1960 2466 -4383 * 6477 221 25 45 chr6 129778736 129779054 -52636188 + L1P5 LINE L1 3881 4204 -2654 216 0 0 0 chr6 129779054 129779078 -52636164 + (TAA)n Simple_repeat Simple_repeat 1 24 0 6477 221 25 45 chr6 129779078 129781411 -52633831 + L1P5 LINE L1 4204 6473 -385 * 15000 138 31 29 chr6 129781408 129785387 -52629855 - L1P3 LINE L1 -2072 4389 8 246 252 333 17 chr6 129786124 129786299 -52628943 - MIR SINE MIR -10 252 21 40996 38 36 1 chr6 129786667 129792608 -52622634 + L1PA3 LINE L1 1 6155 0 7217 44 1 3 chr6 129792620 129793621 -52621621 + L1PA4 LINE L1 5157 6155 0 231 174 41 8 chr6 129795735 129795856 -52619386 + (TA)n Simple_repeat Simple_repeat 1 125 0 714 264 141 82 chr6 129796292 129796838 -52618404 + MLT1G LTR MaLR 13 590 0 2251 68 0 19 chr6 129797546 129797854 -52617388 + AluY SINE Alu 1 302 -9 27 0 0 0 chr6 129798703 129798730 -52616512 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 129800180 129800208 -52615034 + AT_rich Low_complexity Low_complexity 1 28 0 1907 166 0 13 chr6 129800409 129800717 -52614525 + AluJb SINE Alu 6 309 -3 22 0 0 0 chr6 129800922 129800944 -52614298 + AT_rich Low_complexity Low_complexity 1 22 0 420 250 29 0 chr6 129801012 129801116 -52614126 - MIR SINE MIR 0 262 156 297 262 0 0 chr6 129801125 129801186 -52614056 - MER63 DNA MER1_type -17 1045 985 * 602 244 15 0 chr6 129801184 129801315 -52613927 - MER63 DNA MER1_type -76 760 2 265 345 127 25 chr6 129801461 129801658 -52613584 + L2 LINE L2 2564 2780 -534 195 69 0 0 chr6 129803563 129803592 -52611650 + (TG)n Simple_repeat Simple_repeat 2 30 0 212 336 144 39 chr6 129803955 129804059 -52611183 - L2 LINE L2 -1 3271 3157 35 24 0 0 chr6 129805315 129805357 -52609885 + AT_rich Low_complexity Low_complexity 1 42 0 224 372 74 33 chr6 129806326 129806447 -52608795 + L2 LINE L2 3137 3262 -10 2194 70 0 43 chr6 129807214 129807514 -52607728 - AluY SINE Alu -24 287 1 633 259 118 56 chr6 129808428 129808802 -52606440 + L1MCc LINE L1 24 420 -6003 730 124 0 41 chr6 129808890 129809011 -52606231 - AluSg SINE Alu -193 117 2 1471 235 52 73 chr6 129809174 129810292 -52604950 + L1MC/D LINE L1 4649 5743 -780 1402 131 30 13 chr6 129810444 129810681 -52604561 + L1PA16 LINE L1 5926 6166 0 1105 201 10 10 chr6 129810931 129811140 -52604102 + MER2 DNA MER2_type 2 210 -135 212 108 92 0 chr6 129811142 129811207 -52604035 + (TTATA)n Simple_repeat Simple_repeat 2 72 0 240 280 0 13 chr6 129811443 129811518 -52603724 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 43655 40 3 1 chr6 129811555 129817697 -52597545 - L1PA3 LINE L1 0 6155 1 833 224 68 34 chr6 129817702 129817966 -52597276 - L1MB8 LINE L1 -72 6106 5834 * 1703 160 6 44 chr6 129817965 129818308 -52596934 + L1MB8 LINE L1 5488 5817 -361 305 317 17 61 chr6 129818696 129818876 -52596366 - MER5B DNA MER1_type -6 172 1 335 349 9 19 chr6 129819965 129820071 -52595171 - L2 LINE L2 -8 3264 3160 497 327 130 17 chr6 129820316 129820677 -52594565 - L2 LINE L2 -350 2964 2563 350 318 154 0 chr6 129820868 129821063 -52594179 + MIR SINE MIR 28 252 -10 23 86 0 0 chr6 129821096 129821154 -52594088 + AT_rich Low_complexity Low_complexity 1 58 0 739 294 136 30 chr6 129822156 129822554 -52592688 - L2 LINE L2 0 3313 2874 1847 198 26 3 chr6 129822555 129822903 -52592339 - MLT1A1 LTR MaLR 0 365 10 290 254 44 70 chr6 129822912 129823026 -52592216 - L2 LINE L2 -436 2878 2768 229 316 96 0 chr6 129824317 129824453 -52590789 + MIR SINE MIR 114 262 0 348 296 119 13 chr6 129824566 129824725 -52590517 + MER5B DNA MER1_type 2 177 -1 202 326 35 23 chr6 129824753 129824839 -52590403 - L3b LINE CR1 -247 1336 1250 342 350 17 28 chr6 129824896 129825076 -52590166 - MIR3 SINE MIR -10 198 21 252 0 0 0 chr6 129826007 129826035 -52589207 + (T)n Simple_repeat Simple_repeat 1 28 0 1682 302 32 17 chr6 129826425 129827206 -52588036 - L1M4 LINE L1 -858 5288 4496 548 296 109 40 chr6 129827207 129827454 -52587788 + LTR16A LTR ERVL 94 357 -93 258 270 0 0 chr6 129827526 129827589 -52587653 + GA-rich Low_complexity Low_complexity 2 64 0 30 0 0 0 chr6 129828799 129828829 -52586413 + AT_rich Low_complexity Low_complexity 1 30 0 1829 162 3 3 chr6 129829227 129829517 -52585725 + AluJb SINE Alu 1 290 -22 222 246 35 18 chr6 129829574 129829631 -52585611 - L2 LINE L2 0 3272 3215 30 0 0 0 chr6 129829631 129829661 -52585581 + AT_rich Low_complexity Low_complexity 1 30 0 2115 118 0 3 chr6 129830387 129830693 -52584549 - AluSx SINE Alu -7 305 1 29 70 0 0 chr6 129831153 129831210 -52584032 + AT_rich Low_complexity Low_complexity 1 57 0 189 333 80 42 chr6 129831625 129831838 -52583404 + L2 LINE L2 1444 1664 -1650 239 255 60 74 chr6 129831838 129831987 -52583255 + L1M3c LINE L1 643 789 -5990 262 108 60 0 chr6 129831989 129832072 -52583170 + (TA)n Simple_repeat Simple_repeat 2 89 0 515 106 49 0 chr6 129832096 129832238 -52583004 + (TA)n Simple_repeat Simple_repeat 1 149 0 2216 292 50 16 chr6 129832798 129833813 -52581429 + L1M3c LINE L1 1501 2550 -4299 301 309 41 24 chr6 129833949 129834072 -52581170 - L1ME3A LINE L1 -286 5884 5760 525 243 73 47 chr6 129834268 129834736 -52580506 - L1ME3A LINE L1 -509 5657 5184 228 251 145 77 chr6 129835048 129835121 -52580121 - L1ME3A LINE L1 -1315 4831 4764 1872 150 7 0 chr6 129835121 129835408 -52579834 - AluSx SINE Alu -23 289 1 228 251 145 77 chr6 129835408 129835817 -52579425 - L1ME3A LINE L1 -1382 4764 4316 29 0 0 0 chr6 129835861 129835890 -52579352 + AT_rich Low_complexity Low_complexity 1 29 0 523 343 106 13 chr6 129835972 129836284 -52578958 + L1MB1 LINE L1 1 341 -5800 1092 240 0 0 chr6 129836318 129836547 -52578695 + L1MB1 LINE L1 4094 4322 -1888 19541 31 1 0 chr6 129836574 129839714 -52575528 - L1PA4 LINE L1 -1 6154 3012 15546 49 1 7 chr6 129839714 129840543 -52574699 + L1P LINE L1 1008 1840 -4306 2787 16 0 0 chr6 129840543 129840852 -52574390 - AluYa5 SINE Alu -2 309 1 15546 49 1 7 chr6 129840852 129842010 -52573232 + L1P LINE L1 1840 2985 -3161 3590 212 21 47 chr6 129842006 129842956 -52572286 + L1MB1 LINE L1 4318 5242 -968 * 667 191 123 0 chr6 129842959 129843121 -52572121 + L1MB1 LINE L1 5971 6152 -80 1055 166 83 19 chr6 129843541 129843746 -52571496 + AluJb SINE Alu 83 300 -12 3272 212 130 21 chr6 129843762 129844097 -52571145 + Tigger6a DNA MER2_type 2 299 -1298 1861 155 13 0 chr6 129844097 129844400 -52570842 + AluSx SINE Alu 1 307 -5 3272 212 130 21 chr6 129844400 129844815 -52570427 + Tigger6a DNA MER2_type 299 668 -929 2440 84 34 0 chr6 129844815 129845173 -52570069 + L1PA13 LINE L1 5791 6160 -3 3272 212 130 21 chr6 129845173 129845397 -52569845 + Tigger6a DNA MER2_type 668 1083 0 1084 261 113 35 chr6 129845397 129846078 -52569164 - L1ME2 LINE L1 -80 6084 5351 22 56 0 0 chr6 129846092 129846128 -52569114 + AT_rich Low_complexity Low_complexity 1 36 0 228 269 0 0 chr6 129846878 129846945 -52568297 + L1ME LINE L1 562 628 -5442 1863 144 18 15 chr6 129847856 129848190 -52567052 - L1MA3 LINE L1 -2 6303 5969 2749 156 12 25 chr6 129848190 129848708 -52566534 - L1 LINE L1 -1661 5904 5394 * 6728 139 22 78 chr6 129848682 129850321 -52564921 - L1 LINE L1 -3612 3953 2441 1625 136 26 100 chr6 129850322 129850482 -52564760 + THE1C LTR MaLR 14 184 -191 2101 125 16 0 chr6 129850482 129850787 -52564455 - AluSx SINE Alu -2 310 1 231 36 0 0 chr6 129850789 129850817 -52564425 + (TA)n Simple_repeat Simple_repeat 2 29 0 1625 136 26 100 chr6 129850817 129851044 -52564198 + THE1C LTR MaLR 185 375 0 8412 174 9 21 chr6 129851044 129852548 -52562694 - L1 LINE L1 -5126 2439 954 8211 216 26 16 chr6 129852551 129854622 -52560620 - L1 LINE L1 -1882 5683 3592 2515 149 30 103 chr6 129854628 129855192 -52560050 - L1 LINE L1 -7028 537 15 1955 154 36 33 chr6 129855813 129856176 -52559066 - THE1B LTR MaLR 0 364 1 24 53 0 0 chr6 129857000 129857038 -52558204 + AT_rich Low_complexity Low_complexity 1 38 0 26 64 0 0 chr6 129857136 129857183 -52558059 + AT_rich Low_complexity Low_complexity 1 47 0 437 302 25 24 chr6 129857567 129857893 -52557349 + L1M4 LINE L1 3628 3955 -2191 37 81 0 0 chr6 129857896 129857982 -52557260 + AT_rich Low_complexity Low_complexity 1 86 0 399 308 148 39 chr6 129858139 129858577 -52556665 + L1M4 LINE L1 4175 4660 -1486 265 290 0 58 chr6 129858659 129858797 -52556445 + L1M4 LINE L1 4803 4932 -1214 760 292 92 11 chr6 129858925 129859295 -52555947 + L1MEc LINE L1 1418 1817 -4579 11620 139 21 24 chr6 129859295 129859968 -52555274 + Tigger1 DNA MER2_type 1 674 -1744 2536 40 0 3 chr6 129859968 129860267 -52554975 + AluY SINE Alu 1 298 -13 11620 139 21 24 chr6 129860267 129862038 -52553204 + Tigger1 DNA MER2_type 674 2418 0 1901 251 49 10 chr6 129862053 129862887 -52552355 + L1MEc LINE L1 1833 2660 -3555 1628 172 54 0 chr6 129862879 129863176 -52552066 - L1M3 LINE L1 -377 5806 5494 * 1011 70 44 0 chr6 129863176 129863408 -52551834 + CT-rich Low_complexity Low_complexity 1 242 0 1143 240 9 8 chr6 129863409 129863872 -52551370 - L1M3 LINE L1 -709 5471 5030 1585 299 94 39 chr6 129863910 129865077 -52550165 + L1MC4 LINE L1 6669 7900 -142 587 268 35 15 chr6 129865191 129865389 -52549853 + MIR SINE MIR 57 258 -4 342 311 162 40 chr6 129866336 129866632 -52548610 - L2 LINE L2 0 3313 2982 251 298 117 91 chr6 129866663 129867072 -52548170 - L2 LINE L2 -342 2972 2553 918 125 7 0 chr6 129867474 129867626 -52547616 - L1PA13 LINE L1 0 6163 6011 1378 190 94 67 chr6 129868146 129868594 -52546648 - MLT1C LTR MaLR 0 467 8 240 384 71 0 chr6 129869342 129869441 -52545801 - L2 LINE L2 -16 3256 3151 21 0 0 0 chr6 129870896 129870917 -52544325 + AT_rich Low_complexity Low_complexity 1 21 0 430 276 49 8 chr6 129872966 129873089 -52542153 + Charlie8 DNA MER1_type 87 214 -2203 536 300 8 62 chr6 129873134 129873377 -52541865 - MER102a DNA MER1_type -14 316 87 21 36 0 0 chr6 129877096 129877124 -52538118 + AT_rich Low_complexity Low_complexity 1 28 0 2177 85 0 58 chr6 129877514 129877842 -52537400 + AluSg SINE Alu 1 309 -1 1809 115 48 10 chr6 129878049 129878344 -52536898 + AluSg SINE Alu 1 306 -4 268 173 39 0 chr6 129878960 129879012 -52536230 + MER68 LTR ERV1 167 220 -342 7408 141 42 48 chr6 129879050 129880484 -52534758 - Ricksha DNA DNA 0 3246 1821 1227 232 95 4 chr6 129880482 129880743 -52534499 - Ricksha DNA DNA -1042 139 21 * 2125 108 37 0 chr6 129880743 129880861 -52534381 + AluSg SINE Alu 3 115 -195 206 32 32 0 chr6 129880861 129880892 -52534350 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2125 108 37 0 chr6 129880892 129881069 -52534173 + AluSg SINE Alu 115 309 -1 1227 232 95 4 chr6 129881069 129881090 -52534152 - Ricksha DNA DNA -1160 21 3 462 336 89 18 chr6 129881116 129881396 -52533846 + MER68 LTR ERV1 257 556 -6 491 340 126 7 chr6 129881414 129881699 -52533543 - L2 LINE L2 -189 3124 2806 2030 124 39 36 chr6 129882497 129882860 -52532382 + THE1B LTR MaLR 1 364 0 187 225 56 42 chr6 129883401 129883472 -52531770 - L2 LINE L2 -75 3238 3167 18403 157 7 20 chr6 129885213 129888710 -52526532 - L1P3 LINE L1 -1812 4649 1201 2275 165 0 2 chr6 129888710 129889111 -52526131 - L1P LINE L1 -1116 5030 4631 4425 103 23 2 chr6 129889147 129889766 -52525476 - L1P3 LINE L1 -4734 1141 510 5929 116 7 3 chr6 129889766 129891572 -52523670 + L1PA11 LINE L1 4357 6173 -1 1867 279 57 20 chr6 129891704 129892523 -52522719 - L1ME1 LINE L1 -15 6134 5266 271 340 101 23 chr6 129892667 129893014 -52522228 - L1ME1 LINE L1 -5285 834 461 770 202 206 7 chr6 129893127 129893409 -52521833 - Charlie2 DNA MER1_type -365 2497 2160 1195 210 28 28 chr6 129893411 129893730 -52521512 - Charlie2b DNA MER1_type -1517 1265 947 210 174 0 0 chr6 129893872 129893918 -52521324 + T-rich Low_complexity Low_complexity 1 46 0 246 318 116 52 chr6 129894871 129895044 -52520198 - L2 LINE L2 0 3313 3130 352 285 97 25 chr6 129895471 129895679 -52519563 + MIR SINE MIR 38 258 -4 467 160 10 10 chr6 129898179 129898279 -52516963 - L1MA4 LINE L1 -144 6156 6057 719 190 0 0 chr6 129898279 129898414 -52516828 + L1MA4 LINE L1 6153 6294 -6 269 320 80 0 chr6 129898582 129898682 -52516560 - LTR16A LTR ERVL -10 440 333 339 328 29 18 chr6 129898726 129898897 -52516345 - MERVL LTR ERVL -2855 2630 2458 417 345 0 0 chr6 129898900 129899039 -52516203 - MERVL LTR ERVL -3108 1888 1750 540 344 26 55 chr6 129899060 129899481 -52515761 - MERVL LTR ERVL -3528 1468 1060 333 336 0 9 chr6 129901268 129901375 -52513867 + MLT1H LTR MaLR 140 245 -304 2185 63 4 0 chr6 129901514 129901784 -52513458 + AluY SINE Alu 27 297 -14 4658 306 161 19 chr6 129903164 129905801 -52509441 - L2 LINE L2 -158 3155 151 711 197 22 0 chr6 129905927 129906064 -52509178 + L1MC1 LINE L1 6176 6315 -18 7172 121 9 17 chr6 129906402 129908383 -52506859 - L1PA8A LINE L1 -1 6445 4494 7868 176 8 30 chr6 129908383 129911278 -52503964 - L1PA8A LINE L1 -3562 2899 12 295 277 98 9 chr6 129911915 129912027 -52503215 + L1ME4a LINE L1 5935 6056 -65 620 323 32 0 chr6 129913180 129913397 -52501845 - MIR SINE MIR -37 225 2 652 250 66 13 chr6 129913907 129914059 -52501183 - MER45A DNA AcHobo -15 163 4 196 91 45 0 chr6 129915160 129915204 -52500038 + (TA)n Simple_repeat Simple_repeat 1 46 0 27 29 0 0 chr6 129915379 129915413 -52499829 + AT_rich Low_complexity Low_complexity 1 34 0 870 346 42 10 chr6 129916195 129916602 -52498640 - LTR33 LTR ERVL 0 521 102 189 0 0 0 chr6 129916684 129916705 -52498537 + (CA)n Simple_repeat Simple_repeat 2 22 0 22 35 0 0 chr6 129917957 129917986 -52497256 + AT_rich Low_complexity Low_complexity 1 29 0 1818 229 65 76 chr6 129918017 129918699 -52496543 - L1ME1 LINE L1 -100 6066 5393 255 306 99 9 chr6 129918717 129918939 -52496303 - L1ME1 LINE L1 -2580 3566 3325 25 0 0 0 chr6 129919643 129919668 -52495574 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr6 129919726 129919767 -52495475 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr6 129920918 129920940 -52494302 + AT_rich Low_complexity Low_complexity 1 22 0 265 259 17 0 chr6 129921712 129921770 -52493472 - L2 LINE L2 -4 3268 3210 592 315 62 19 chr6 129923929 129924189 -52491053 - MLT1J LTR MaLR -170 341 71 346 261 22 0 chr6 129924403 129924495 -52490747 - LTR67 LTR ERVL -25 532 439 27 49 0 0 chr6 129925227 129925268 -52489974 + AT_rich Low_complexity Low_complexity 1 41 0 28 0 0 0 chr6 129926240 129926268 -52488974 + AT_rich Low_complexity Low_complexity 1 28 0 225 355 45 0 chr6 129927482 129927592 -52487650 + L2 LINE L2 2907 3021 -251 21 0 0 0 chr6 129929840 129929861 -52485381 + AT_rich Low_complexity Low_complexity 1 21 0 1170 259 49 16 chr6 129929895 129930262 -52484980 + L1ME3A LINE L1 5746 6124 -46 274 250 21 21 chr6 129932299 129932395 -52482847 - MER103 DNA DNA 0 166 71 242 338 0 0 chr6 129932983 129933060 -52482182 - MIR SINE MIR -10 252 176 2348 185 20 28 chr6 129933071 129933594 -52481648 - LTR27 LTR ERV1 -11 490 3 396 336 15 8 chr6 129933618 129933752 -52481490 - MIR SINE MIR -113 149 15 29 78 0 0 chr6 129934838 129934902 -52480340 + AT_rich Low_complexity Low_complexity 1 64 0 868 255 68 85 chr6 129934968 129935390 -52479852 + MLT1J1 LTR MaLR 61 446 0 1999 104 11 7 chr6 129935442 129935729 -52479513 - AluSx SINE Alu -22 290 3 28 48 0 0 chr6 129935783 129935825 -52479417 + AT_rich Low_complexity Low_complexity 1 42 0 196 320 70 39 chr6 129935847 129936003 -52479239 - L2 LINE L2 -5 3308 3148 29 28 0 0 chr6 129936632 129936668 -52478574 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 129938022 129938050 -52477192 + AT_rich Low_complexity Low_complexity 1 28 0 212 284 116 42 chr6 129938682 129938777 -52476465 + L2 LINE L2 3154 3255 -17 1924 136 0 42 chr6 129939278 129939588 -52475654 + AluSx SINE Alu 3 299 -13 267 288 14 14 chr6 129939770 129939843 -52475399 + L2 LINE L2 3193 3265 -48 1126 290 72 8 chr6 129939894 129940294 -52474948 + LTR16A LTR ERVL 25 450 0 2138 87 56 0 chr6 129941974 129942260 -52472982 + AluSc SINE Alu 7 308 -1 921 332 108 28 chr6 129943762 129944311 -52470931 + L2 LINE L2 2596 3211 -102 378 0 0 0 chr6 129944311 129944353 -52470889 + (CA)n Simple_repeat Simple_repeat 1 42 0 921 332 108 28 chr6 129944353 129944461 -52470781 + L2 LINE L2 3211 3309 -4 306 246 282 0 chr6 129944696 129944806 -52470436 + MER5A DNA MER1_type 48 188 -1 616 258 52 52 chr6 129944920 129945133 -52470109 - MER97c DNA MER1_type? -874 216 4 189 0 0 0 chr6 129946946 129946967 -52468275 + (TA)n Simple_repeat Simple_repeat 1 21 0 1221 279 44 31 chr6 129947699 129948176 -52467066 - L2 LINE L2 -3 3310 2828 265 326 24 118 chr6 129948309 129948649 -52466593 - L2 LINE L2 -93 3179 2872 181 286 63 16 chr6 129948713 129948776 -52466466 + MIR SINE MIR 149 214 -48 232 296 12 37 chr6 129948856 129948937 -52466305 + L2 LINE L2 3234 3312 -1 420 350 88 36 chr6 129948963 129949406 -52465836 - L2 LINE L2 -694 2620 2155 324 229 0 0 chr6 129951268 129951351 -52463891 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 1330 192 62 55 chr6 129951367 129951433 -52463809 + L1MC3 LINE L1 7381 7445 -340 1645 175 13 25 chr6 129951433 129951747 -52463495 - AluSx SINE Alu -2 310 1 1330 192 62 55 chr6 129951747 129952081 -52463161 + L1MC3 LINE L1 7445 7784 -1 685 275 35 27 chr6 129952102 129952477 -52462765 + L1M4 LINE L1 2528 2905 -3241 1656 303 74 16 chr6 129952512 129953864 -52461378 + L1M3a LINE L1 1542 4306 -3259 2065 271 88 4 chr6 129953919 129954971 -52460271 + L1M3a LINE L1 2262 3406 -4160 767 205 6 0 chr6 129954971 129955127 -52460115 + L1M3a LINE L1 5250 5406 -2159 10167 197 77 59 chr6 129955142 129958574 -52456668 + L1MA9 LINE L1 2193 5563 -985 5439 132 20 2 chr6 129958574 129959624 -52455618 + L1PA13 LINE L1 5083 6148 -15 10167 197 77 59 chr6 129959624 129960340 -52454902 + L1MA9 LINE L1 5563 6405 -143 2857 84 97 2 chr6 129960340 129960754 -52454488 - MLT2A2 LTR ERVL 0 453 1 10167 197 77 59 chr6 129960754 129960891 -52454351 + L1MA9 LINE L1 6405 6538 -10 25 0 0 0 chr6 129961553 129961578 -52453664 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 129963156 129963184 -52452058 + AT_rich Low_complexity Low_complexity 1 28 0 7527 24 5 0 chr6 129963729 129964616 -52450626 - L1PA3 LINE L1 -2 6153 5263 225 0 0 0 chr6 129964909 129964934 -52450308 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 1917 111 7 4 chr6 129965593 129965873 -52449369 - AluSg SINE Alu -7 303 23 253 324 108 9 chr6 129966409 129966520 -52448722 + L2 LINE L2 3133 3254 -18 524 297 100 29 chr6 129967101 129967340 -52447902 + MER77 LTR ERV1 307 562 -43 22 35 0 0 chr6 129967609 129967638 -52447604 + AT_rich Low_complexity Low_complexity 1 29 0 290 316 180 0 chr6 129967640 129967779 -52447463 + L2 LINE L2 3109 3272 0 265 361 55 20 chr6 129967943 129968091 -52447151 + MIR3 SINE MIR 3 157 -51 24 32 0 0 chr6 129968268 129968299 -52446943 + AT_rich Low_complexity Low_complexity 1 31 0 427 295 57 0 chr6 129968619 129968724 -52446518 - L2 LINE L2 0 3313 3203 25 51 0 0 chr6 129970826 129970865 -52444377 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 129971633 129971654 -52443588 + AT_rich Low_complexity Low_complexity 1 21 0 2109 186 55 7 chr6 129974391 129975019 -52440223 + L1MA9 LINE L1 4910 5569 -722 10455 171 9 28 chr6 129975021 129977053 -52438189 + L1P LINE L1 3319 5313 -833 200 167 0 0 chr6 129977091 129977118 -52438124 + T-rich Low_complexity Low_complexity 5 34 -6 462 151 12 12 chr6 129977118 129977204 -52438038 - L1MD1 LINE L1 -16 6226 6141 1179 209 20 4 chr6 129977264 129977517 -52437725 - L1MD1 LINE L1 -72 6170 5914 5690 96 13 18 chr6 129977529 129977705 -52437537 + L1PA12 LINE L1 5317 5492 -676 1612 208 0 3 chr6 129977705 129978008 -52437234 + AluJb SINE Alu 1 302 -10 5690 96 13 18 chr6 129978008 129978687 -52436555 + L1PA12 LINE L1 5492 6168 0 3377 193 14 15 chr6 129978687 129979422 -52435820 + L1MA9 LINE L1 5572 6306 -6 185 146 146 21 chr6 129980354 129980402 -52434840 + L2 LINE L2 1373 1426 -1888 382 260 55 16 chr6 129981247 129981374 -52433868 - MIR SINE MIR -50 212 81 2168 105 0 37 chr6 129981607 129981931 -52433311 + AluSx SINE Alu 1 312 0 514 319 122 39 chr6 129982190 129982649 -52432593 + L2 LINE L2 2769 3269 -44 1735 159 159 8 chr6 129982652 129983024 -52432218 + MSTA LTR MaLR 1 428 0 9181 143 12 36 chr6 129983025 129984642 -52430600 + MSTA-int LTR MaLR 3 1580 0 1745 162 126 26 chr6 129984642 129985031 -52430211 + MSTA LTR MaLR 1 428 0 26 0 0 0 chr6 129985215 129985241 -52430001 + AT_rich Low_complexity Low_complexity 1 26 0 2191 121 0 0 chr6 129989562 129989867 -52425375 - AluSx SINE Alu -7 305 1 203 138 0 0 chr6 129990084 129990113 -52425129 + (TG)n Simple_repeat Simple_repeat 1 29 0 401 328 145 31 chr6 129990113 129990561 -52424681 - L2 LINE L2 -1612 1702 1204 272 245 201 44 chr6 129990605 129990809 -52424433 - L1MD1 LINE L1 -269 5852 5617 29 60 0 0 chr6 129990860 129990910 -52424332 + AT_rich Low_complexity Low_complexity 1 50 0 416 289 32 93 chr6 129991192 129991472 -52423770 - HAL1 LINE L1 -1013 1494 1232 274 280 149 0 chr6 129991613 129991788 -52423454 - HAL1 LINE L1 -1508 999 799 421 303 95 5 chr6 129991855 129992066 -52423176 - L1MEc LINE L1 -4141 2255 2026 373 335 49 10 chr6 129992219 129992422 -52422820 - L1MEc LINE L1 -4601 1795 1585 554 121 0 10 chr6 129992439 129992538 -52422704 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 971 311 58 40 chr6 129992542 129993301 -52421941 - L1MEc LINE L1 -5292 913 141 698 367 52 26 chr6 129993301 129993761 -52421481 + L2 LINE L2 2396 2867 -447 249 183 0 0 chr6 129994082 129994142 -52421100 + T-rich Low_complexity Low_complexity 1 60 0 19512 32 1 0 chr6 129994162 129997303 -52417939 - L1PA4 LINE L1 0 6155 3012 15576 48 1 7 chr6 129997303 129998132 -52417110 + L1P LINE L1 1008 1840 -4306 2773 19 0 0 chr6 129998132 129998441 -52416801 - AluYa5 SINE Alu -2 309 1 15576 48 1 7 chr6 129998441 129999599 -52415643 + L1P LINE L1 1840 2985 -3161 3590 212 21 47 chr6 129999595 130000545 -52414697 + L1MB1 LINE L1 4254 5178 -968 * 653 198 123 0 chr6 130000548 130000710 -52414532 + L1MB1 LINE L1 5907 6088 -80 1055 166 83 19 chr6 130001130 130001335 -52413907 + AluJb SINE Alu 83 300 -12 2063 238 103 26 chr6 130001351 130001686 -52413556 + Tigger6a DNA MER2_type 2 310 -1287 1861 155 13 0 chr6 130001686 130001989 -52413253 + AluSx SINE Alu 1 307 -5 2063 238 103 26 chr6 130001989 130002314 -52412928 + Tigger6a DNA MER2_type 310 713 -370 703 282 30 38 chr6 130002851 130003113 -52412129 - MIR SINE MIR -1 261 2 333 129 24 12 chr6 130003574 130003659 -52411583 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 265 250 0 17 chr6 130004790 130004850 -52410392 + CT-rich Low_complexity Low_complexity 2 60 0 22 0 0 0 chr6 130005102 130005124 -52410118 + AT_rich Low_complexity Low_complexity 1 22 0 357 148 80 0 chr6 130005163 130005251 -52409991 - L1MB4 LINE L1 0 6180 6086 2250 151 24 44 chr6 130005251 130005545 -52409697 - L1PA16 LINE L1 -3 6163 5878 1620 126 0 47 chr6 130005545 130005799 -52409443 + AluSx SINE Alu 53 294 -18 2250 151 24 44 chr6 130005799 130005952 -52409290 - L1PA16 LINE L1 -288 5878 5723 2329 195 15 58 chr6 130006640 130007216 -52408026 - L1MB7 LINE L1 0 6184 5633 285 284 93 31 chr6 130007534 130007696 -52407546 - L2 LINE L2 -4 3309 3138 315 0 0 0 chr6 130008143 130008178 -52407064 + (CA)n Simple_repeat Simple_repeat 1 35 0 407 226 122 112 chr6 130008676 130008963 -52406279 - MLT1L LTR MaLR -325 290 1 336 209 12 12 chr6 130010111 130010197 -52405045 - L1P LINE L1 -2741 3405 3320 1347 134 62 78 chr6 130010315 130010636 -52404606 - L1MA9 LINE L1 -9 6303 5988 247 215 51 25 chr6 130010744 130010823 -52404419 + MER5B DNA MER1_type 18 98 -80 33412 43 1 1 chr6 130011595 130017472 -52397770 + L1PA3 LINE L1 3 5873 -282 1114 213 162 60 chr6 130067522 130067905 -52347337 + MLT2B1 LTR ERVL 10 353 -167 369 0 0 0 chr6 130067905 130067946 -52347296 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 540 0 0 0 chr6 130067945 130068005 -52347237 + (TA)n Simple_repeat Simple_repeat 1 60 0 1114 213 162 60 chr6 130067946 130068085 -52347157 + MLT2B1 LTR ERVL 353 520 0 796 258 34 25 chr6 130068085 130068411 -52346831 - L1M4 LINE L1 -2641 3505 3177 445 258 123 88 chr6 130068807 130069067 -52346175 - MLT1J LTR MaLR -175 336 68 543 287 75 5 chr6 130070115 130070303 -52344939 + MLT1I LTR MaLR 11 211 -198 22 0 0 0 chr6 130071683 130071705 -52343537 + AT_rich Low_complexity Low_complexity 1 22 0 285 330 0 0 chr6 130072106 130072194 -52343048 + L1ME1 LINE L1 374 461 -5935 3967 238 78 18 chr6 130072909 130074487 -52340755 + L1ME1 LINE L1 783 2418 -3988 248 119 0 24 chr6 130074491 130074533 -52340709 + Alu SINE Alu 1 41 -258 911 174 7 0 chr6 130074533 130074688 -52340554 + AluSg/x SINE Alu 138 293 -17 32 91 0 0 chr6 130074761 130074849 -52340393 + AT_rich Low_complexity Low_complexity 1 88 0 634 242 95 8 chr6 130074854 130075228 -52340014 + L1ME1 LINE L1 4806 5421 -985 3041 213 97 23 chr6 130075237 130076132 -52339110 + L1ME1 LINE L1 5451 6409 -17 2452 156 29 7 chr6 130077241 130077658 -52337584 - MSTB LTR MaLR 0 426 1 200 267 89 33 chr6 130077709 130077799 -52337443 + MER5B DNA MER1_type 1 95 -83 652 265 30 0 chr6 130077909 130078075 -52337167 - MER5B DNA MER1_type -7 171 1 464 277 8 0 chr6 130078425 130078555 -52336687 - MER94 DNA DNA -3 131 1 1558 258 64 45 chr6 130078680 130079262 -52335980 - MLT1E LTR MaLR 0 593 1 2040 202 120 13 chr6 130079530 130079995 -52335247 - MLT2B2 LTR ERVL 0 515 1 2560 100 98 5 chr6 130080345 130080755 -52334487 + LTR7 LTR ERV1 1 448 -2 9610 170 62 57 chr6 130080757 130084730 -52330512 + HERVH LTR ERV1 1 3993 -3720 4409 133 1 1 chr6 130084732 130085394 -52329848 + HERVH LTR ERV1 4488 5149 -2564 1354 127 18 9 chr6 130085391 130085612 -52329630 + HERVH LTR ERV1 5597 5819 -1894 * 2370 93 50 13 chr6 130085610 130085988 -52329254 + HERVH LTR ERV1 7322 7713 0 2395 85 154 5 chr6 130085988 130086378 -52328864 + LTR7 LTR ERV1 1 448 -2 356 301 57 34 chr6 130086601 130086810 -52328432 + L3 LINE CR1 1069 1282 -295 194 377 167 7 chr6 130086873 130086962 -52328280 + L3 LINE CR1 1417 1490 -87 6636 101 16 23 chr6 130086962 130087934 -52327308 + LTR5 LTR ERVK 4 969 0 194 377 167 7 chr6 130087934 130087982 -52327260 + L3 LINE CR1 1490 1576 -1 287 347 0 11 chr6 130088181 130088276 -52326966 - L2 LINE L2 -1 3312 3219 191 167 0 21 chr6 130088783 130088831 -52326411 + (TG)n Simple_repeat Simple_repeat 1 47 0 4918 142 69 2 chr6 130089223 130090396 -52324846 + L1PB4 LINE L1 4903 6143 -13 26 50 0 0 chr6 130090396 130090436 -52324806 + AT_rich Low_complexity Low_complexity 1 40 0 255 284 216 26 chr6 130091104 130091294 -52323948 + MIR SINE MIR 11 236 -26 220 190 26 52 chr6 130091688 130091804 -52323438 + GA-rich Low_complexity Low_complexity 3 115 0 28 29 0 0 chr6 130092729 130092764 -52322478 + AT_rich Low_complexity Low_complexity 1 35 0 2763 37 0 0 chr6 130092814 130093141 -52322101 + L1PA5 LINE L1 5815 6141 -13 483 300 30 30 chr6 130093466 130093666 -52321576 + MIR SINE MIR 29 228 -34 228 264 69 0 chr6 130095138 130095225 -52320017 + L1MC4 LINE L1 6614 6706 -1336 294 292 163 26 chr6 130096378 130096540 -52318702 + MIR SINE MIR 37 218 -44 25 0 0 0 chr6 130096952 130096977 -52318265 + AT_rich Low_complexity Low_complexity 1 25 0 31 76 0 0 chr6 130097006 130097072 -52318170 + AT_rich Low_complexity Low_complexity 1 66 0 1878 32 0 0 chr6 130098089 130098308 -52316934 - AluYa5 SINE Alu 0 311 93 294 331 29 6 chr6 130099190 130099362 -52315880 + L2 LINE L2 1471 1646 -1668 1321 215 52 34 chr6 130099829 130100210 -52315032 - MLT1B LTR MaLR 0 390 3 2213 164 56 7 chr6 130100454 130100862 -52314380 - MSTA LTR MaLR 0 428 1 1753 150 21 21 chr6 130100942 130101229 -52314013 + AluSx SINE Alu 1 287 -25 293 161 11 0 chr6 130101233 130101320 -52313922 + (TA)n Simple_repeat Simple_repeat 1 88 0 234 254 15 15 chr6 130101540 130101607 -52313635 + L2 LINE L2 1759 1825 -1489 276 291 52 101 chr6 130101779 130102168 -52313074 + L2 LINE L2 2873 3238 -75 350 281 0 58 chr6 130102352 130102473 -52312769 + MER117 DNA MER1_type 4 117 -80 330 258 339 10 chr6 130103504 130103802 -52311440 + L2 LINE L2 777 1172 -2142 2312 300 78 40 chr6 130103809 130105020 -52310222 + L2 LINE L2 1591 3052 -261 237 33 0 0 chr6 130105064 130105094 -52310148 + (CA)n Simple_repeat Simple_repeat 1 30 0 184 328 41 41 chr6 130105686 130105808 -52309434 + MER5A DNA MER1_type 1 122 -67 * 534 270 197 0 chr6 130105703 130105855 -52309387 - MER5A DNA MER1_type -5 184 3 2233 105 7 0 chr6 130105862 130106158 -52309084 + AluSc SINE Alu 1 298 -11 297 0 0 0 chr6 130106220 130106253 -52308989 + (TG)n Simple_repeat Simple_repeat 2 34 0 2304 169 106 44 chr6 130108393 130109131 -52306111 - LTR1B LTR ERV1 0 826 1 678 245 38 33 chr6 130110080 130110264 -52304978 - MIR SINE MIR -70 192 8 31 0 0 0 chr6 130110425 130110456 -52304786 + AT_rich Low_complexity Low_complexity 1 31 0 180 377 107 45 chr6 130111302 130112105 -52303137 - L2 LINE L2 -429 2885 2033 456 333 101 59 chr6 130112373 130112866 -52302376 + LTR67 LTR ERVL 20 533 -24 279 215 0 0 chr6 130113761 130113826 -52301416 + (TG)n Simple_repeat Simple_repeat 2 66 0 28 29 0 0 chr6 130114171 130114206 -52301036 + AT_rich Low_complexity Low_complexity 1 35 0 485 295 265 13 chr6 130114317 130114778 -52300464 - L3 LINE CR1 -183 1394 818 202 398 56 30 chr6 130115415 130115646 -52299596 - MIR SINE MIR -6 256 20 22 35 0 0 chr6 130117108 130117137 -52298105 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr6 130117307 130117353 -52297889 + AT_rich Low_complexity Low_complexity 1 46 0 2104 110 17 7 chr6 130119012 130119304 -52295938 - AluSx SINE Alu -17 295 1 2324 86 0 7 chr6 130119654 130119956 -52295286 - AluSg SINE Alu 0 310 11 31 0 0 24 chr6 130120049 130120067 -52295175 + AT_rich Low_complexity Low_complexity 1 18 -23 1608 74 0 0 chr6 130120067 130120282 -52294960 + L1PA6 LINE L1 5937 6151 -3 31 0 0 24 chr6 130120282 130120305 -52294937 + AT_rich Low_complexity Low_complexity 18 41 0 1096 152 138 5 chr6 130120331 130120548 -52294694 + Tigger3(Golem) DNA MER2_type 1 246 -2783 1450 180 82 163 chr6 130121238 130121993 -52293249 - LTR8A LTR ERV1 0 727 34 1737 199 39 0 chr6 130122549 130122999 -52292243 + MLT2B1 LTR ERVL 2 520 0 23 33 0 0 chr6 130123122 130123152 -52292090 + AT_rich Low_complexity Low_complexity 1 30 0 202 298 0 0 chr6 130123207 130123264 -52291978 - L2 LINE L2 0 3272 3216 7915 152 34 51 chr6 130123817 130126478 -52288764 + L1MA7 LINE L1 3677 6285 -6 228 357 20 0 chr6 130126621 130126719 -52288523 + L2 LINE L2 2877 2976 -337 193 345 134 0 chr6 130128779 130128898 -52286344 - MIR SINE MIR -6 256 122 610 231 0 0 chr6 130129530 130129647 -52285595 + L2 LINE L2 3197 3313 0 730 337 119 47 chr6 130130145 130131116 -52284126 + L2 LINE L2 1936 2976 -338 1144 239 75 42 chr6 130131537 130131992 -52283250 + MER49 LTR ERV1 241 901 -22 2200 148 17 0 chr6 130132260 130132618 -52282624 - MER47A DNA MER2_type 0 366 3 21 0 0 0 chr6 130134601 130134622 -52280620 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr6 130135686 130135731 -52279511 + AT_rich Low_complexity Low_complexity 1 45 0 381 211 0 28 chr6 130136048 130136119 -52279123 - MER2 DNA MER2_type 0 345 277 1056 231 23 0 chr6 130136121 130136342 -52278900 + AluJo SINE Alu 42 267 -45 1145 173 20 0 chr6 130136383 130136585 -52278657 - MER2 DNA MER2_type -136 209 4 24 32 0 0 chr6 130137357 130137388 -52277854 + AT_rich Low_complexity Low_complexity 1 31 0 186 118 0 0 chr6 130138905 130138939 -52276303 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 4416 32 0 0 chr6 130139076 130139605 -52275637 + L1PA4 LINE L1 5626 6154 -1 334 283 102 36 chr6 130139814 130139980 -52275262 + MIR3 SINE MIR 8 184 -24 23 0 0 0 chr6 130140135 130140158 -52275084 + AT_rich Low_complexity Low_complexity 1 23 0 266 261 0 0 chr6 130140160 130140225 -52275017 + (CAGAGA)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr6 130140375 130140398 -52274844 + AT_rich Low_complexity Low_complexity 1 23 0 1010 187 19 3 chr6 130140920 130141229 -52274013 + MSTD LTR MaLR 3 396 0 1633 143 0 0 chr6 130141501 130141764 -52273478 + AluSx SINE Alu 51 313 0 2533 91 37 6 chr6 130142285 130142638 -52272604 - THE1B LTR MaLR 0 364 1 2733 217 16 17 chr6 130142720 130143297 -52271945 + MER74B LTR ERVL 47 622 0 1741 177 78 91 chr6 130143371 130143416 -52271826 - MLT2B1 LTR ERVL -2 518 474 423 0 0 0 chr6 130143416 130143463 -52271779 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 1741 177 78 91 chr6 130143463 130143942 -52271300 - MLT2B1 LTR ERVL -46 474 1 324 321 80 11 chr6 130144809 130144996 -52270246 - L2 LINE L2 -1 3312 3113 26 0 0 0 chr6 130145084 130145110 -52270132 + AT_rich Low_complexity Low_complexity 1 26 0 903 191 6 39 chr6 130145512 130145690 -52269552 - FAM SINE Alu -1 174 3 395 256 141 32 chr6 130146170 130146483 -52268759 - L1M4 LINE L1 -2144 4002 3656 1055 231 103 36 chr6 130146709 130146991 -52268251 - L1MC4 LINE L1 -453 7589 7265 1651 190 26 37 chr6 130146991 130147343 -52267899 - MER7A DNA MER2_type 0 346 1 1055 231 103 36 chr6 130147343 130147505 -52267737 - L1MC4 LINE L1 -777 7265 7115 483 279 57 6 chr6 130147541 130147699 -52267543 + MIR SINE MIR 91 256 -6 234 156 0 0 chr6 130150149 130150194 -52265048 + (CAT)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr6 130150985 130151008 -52264234 + AT_rich Low_complexity Low_complexity 1 23 0 955 209 0 11 chr6 130151704 130151891 -52263351 + AluSg/x SINE Alu 102 286 -26 181 109 43 0 chr6 130151904 130151950 -52263292 + A-rich Low_complexity Low_complexity 2 49 0 279 153 34 34 chr6 130151978 130152037 -52263205 + LTR8A LTR ERV1 187 245 -482 1268 195 4 40 chr6 130152037 130152309 -52262933 - AluJb SINE Alu -44 268 7 2238 105 3 0 chr6 130152560 130152864 -52262378 + AluSc SINE Alu 5 309 0 370 250 326 11 chr6 130153164 130153348 -52261894 + MIR SINE MIR 21 262 0 376 321 87 47 chr6 130153496 130153684 -52261558 - L1M4 LINE L1 -743 5403 5224 2705 7 13 0 chr6 130153684 130153991 -52261251 - AluY SINE Alu 0 311 1 376 321 87 47 chr6 130153991 130154309 -52260933 - L1M4 LINE L1 -922 5224 4877 414 302 146 41 chr6 130154742 130155106 -52260136 - L2 LINE L2 -6 3307 2906 1426 278 44 5 chr6 130155358 130155789 -52259453 + L1ME1 LINE L1 17 464 -5959 1339 273 44 74 chr6 130156057 130156757 -52258485 + L1ME1 LINE L1 661 1339 -5084 * 6936 162 13 18 chr6 130156753 130159048 -52256194 + L1MA4 LINE L1 4005 6294 -6 515 252 0 0 chr6 130159058 130159191 -52256051 + L1ME1 LINE L1 1319 1452 -4966 1778 180 0 3 chr6 130159191 130159485 -52255757 + AluJo SINE Alu 1 293 -19 1827 246 74 48 chr6 130159568 130160259 -52254983 + L1ME1 LINE L1 4252 4968 -1973 378 107 0 0 chr6 130160259 130160315 -52254927 + (CA)n Simple_repeat Simple_repeat 2 57 0 1827 246 74 48 chr6 130160315 130160420 -52254822 + L1ME1 LINE L1 4968 5069 -1872 1676 231 35 35 chr6 130160411 130160875 -52254367 + L1ME1 LINE L1 6493 6956 -5 * 246 218 90 13 chr6 130160905 130160983 -52254259 - L2 LINE L2 -92 3221 3138 976 293 77 60 chr6 130161000 130161517 -52253725 - L2 LINE L2 -5 3308 2785 1945 110 69 36 chr6 130161517 130161880 -52253362 + THE1C LTR MaLR 1 375 0 976 293 77 60 chr6 130161880 130161913 -52253329 - L2 LINE L2 -528 2785 2754 2986 97 12 2 chr6 130161913 130162344 -52252898 + L1PA14 LINE L1 5726 6160 -1 37 62 0 0 chr6 130162349 130162414 -52252828 + AT_rich Low_complexity Low_complexity 1 65 0 2366 287 137 8 chr6 130162474 130163390 -52251852 - L2 LINE L2 -564 2750 1717 545 261 124 21 chr6 130163410 130163693 -52251549 - L1MC5 LINE L1 -32 7929 7618 1617 286 47 23 chr6 130163700 130164232 -52251010 - L2 LINE L2 -1607 1707 1163 311 246 70 18 chr6 130164952 130165066 -52250176 + Charlie7 DNA MER1_type 2493 2612 0 320 356 94 45 chr6 130165067 130165777 -52249465 - L2 LINE L2 -816 2498 1754 238 286 62 27 chr6 130165960 130166072 -52249170 - MIR SINE MIR -73 189 74 7419 40 0 1 chr6 130166996 130168005 -52247237 + L1PA5 LINE L1 5143 6150 -4 429 217 0 0 chr6 130168171 130168254 -52246988 + L2 LINE L2 3226 3308 -5 689 255 84 35 chr6 130168589 130168965 -52246277 + MLT1D LTR MaLR 1 412 -93 434 174 0 0 chr6 130168982 130169051 -52246191 - MLT1D LTR MaLR -68 437 369 1165 186 14 93 chr6 130169054 130169145 -52246097 - MLT1D LTR MaLR -247 258 161 1561 198 0 21 chr6 130169145 130169433 -52245809 + AluJo SINE Alu 1 282 -30 1165 186 14 93 chr6 130169433 130169621 -52245621 - MLT1D LTR MaLR -344 161 1 415 182 23 0 chr6 130169621 130169708 -52245534 + MLT1D LTR MaLR 417 505 0 246 318 0 0 chr6 130169889 130169955 -52245287 - L2 LINE L2 0 3313 3248 30 0 0 0 chr6 130170029 130170059 -52245183 + AT_rich Low_complexity Low_complexity 1 30 0 1641 116 65 96 chr6 130170243 130170455 -52244787 - THE1C LTR MaLR 0 375 179 1957 165 0 3 chr6 130170455 130170764 -52244478 - AluJb SINE Alu -3 309 2 1641 116 65 96 chr6 130170764 130170938 -52244304 - THE1C LTR MaLR -196 179 1 869 356 24 11 chr6 130170941 130171317 -52243925 - LTR16A LTR ERVL -6 444 64 483 266 45 23 chr6 130171317 130171494 -52243748 - HERV16 LTR ERVL -778 4986 4806 276 254 0 0 chr6 130171783 130171838 -52243404 - HERV16 LTR ERVL -3442 1554 1500 246 179 0 0 chr6 130171838 130171894 -52243348 + (CA)n Simple_repeat Simple_repeat 1 56 0 966 303 32 6 chr6 130172116 130172430 -52242812 - HERV16 LTR ERVL -3785 1211 890 257 296 250 7 chr6 130173589 130173741 -52241501 - MIR SINE MIR 0 262 74 23 33 0 0 chr6 130173741 130173771 -52241471 + AT_rich Low_complexity Low_complexity 1 30 0 256 321 123 30 chr6 130173832 130174271 -52240971 + L2 LINE L2 1609 2088 -1226 262 377 121 13 chr6 130174942 130175173 -52240069 + MIR SINE MIR 1 256 -6 1608 171 18 0 chr6 130177219 130177499 -52237743 + MLT2D LTR ERVL 1 285 -129 216 0 0 0 chr6 130177547 130177571 -52237671 + (TG)n Simple_repeat Simple_repeat 1 24 0 871 286 84 7 chr6 130178008 130178295 -52236947 + MLT1G1 LTR MaLR 1 309 -286 1051 179 58 65 chr6 130178450 130178741 -52236501 + MLT1B LTR MaLR 11 299 -91 532 246 0 23 chr6 130178783 130178913 -52236329 + MLT1B LTR MaLR 428 554 -1 190 405 40 0 chr6 130178914 130178988 -52236254 - L2 LINE L2 -97 3175 3099 23 0 0 0 chr6 130179052 130179075 -52236167 + AT_rich Low_complexity Low_complexity 1 23 0 1463 193 76 16 chr6 130179162 130179530 -52235712 + MLT1B LTR MaLR 1 390 0 21 57 0 0 chr6 130179594 130179629 -52235613 + AT_rich Low_complexity Low_complexity 1 35 0 183 161 0 0 chr6 130179662 130179693 -52235549 + L2 LINE L2 3229 3259 -54 2117 87 73 0 chr6 130179838 130180127 -52235115 + AluSp SINE Alu 1 310 -3 3092 52 16 0 chr6 130180148 130180536 -52234706 + L1PA5 LINE L1 5756 6149 -5 4033 33 4 10 chr6 130181106 130181650 -52233592 + L1PA4 LINE L1 5640 6147 -7 1440 284 56 35 chr6 130182255 130182773 -52232469 + L1MA6 LINE L1 786 1314 -6252 430 261 98 31 chr6 130182889 130183207 -52232035 + L1MA6 LINE L1 3043 3381 -4184 9000 170 16 6 chr6 130183249 130185461 -52229781 + L1MA6 LINE L1 4985 7214 -505 22 88 0 0 chr6 130185461 130185518 -52229724 + AT_rich Low_complexity Low_complexity 1 57 0 2299 158 68 10 chr6 130185551 130186037 -52229205 + L1MA6 LINE L1 7202 7715 -4 2531 186 27 80 chr6 130186037 130187143 -52228099 + L1MC2 LINE L1 5323 6343 -1 23 33 0 0 chr6 130188697 130188727 -52226515 + AT_rich Low_complexity Low_complexity 1 30 0 42 57 0 0 chr6 130188775 130188845 -52226397 + AT_rich Low_complexity Low_complexity 1 70 0 28 71 0 0 chr6 130188880 130188936 -52226306 + AT_rich Low_complexity Low_complexity 1 56 0 355 203 0 16 chr6 130189166 130189230 -52226012 + L2 LINE L2 3242 3304 -9 22 0 0 0 chr6 130189471 130189493 -52225749 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 130189530 130189567 -52225675 + AT_rich Low_complexity Low_complexity 1 37 0 2315 102 0 0 chr6 130189676 130189969 -52225273 + AluSc SINE Alu 1 293 -16 1417 245 58 14 chr6 130189994 130190439 -52224803 - L1ME3 LINE L1 -266 5896 5432 185 360 13 0 chr6 130190439 130190514 -52224728 - MIR SINE MIR -112 150 75 323 167 21 52 chr6 130190622 130190718 -52224524 - L1MC5 LINE L1 -29 7932 7840 304 283 20 10 chr6 130190834 130190933 -52224309 - L1MC4 LINE L1 -254 7788 7689 1213 197 41 27 chr6 130191734 130192028 -52223214 - AluJb SINE Alu -4 298 1 1419 47 42 0 chr6 130193394 130193586 -52221656 + L1PA4 LINE L1 5954 6153 -2 2133 181 35 60 chr6 130194233 130194813 -52220429 + L1ME2 LINE L1 5585 6149 -15 4529 68 109 119 chr6 130194957 130195791 -52219451 - LTR12 LTR ERV1 0 826 1 295 235 61 26 chr6 130195793 130195908 -52219334 + L1MC4 LINE L1 7923 8041 -1 29 0 0 0 chr6 130196704 130196733 -52218509 + AT_rich Low_complexity Low_complexity 1 29 0 326 327 33 40 chr6 130197166 130197316 -52217926 - L1MEd LINE L1 -3594 2535 2387 1942 123 0 0 chr6 130197316 130197604 -52217638 + AluY SINE Alu 17 304 0 6612 74 37 0 chr6 130197604 130198469 -52216773 + MER11D LTR ERVK 1 897 0 6918 55 1 0 chr6 130198469 130199330 -52215912 + HERVK11D LTR ERVK 1 862 -6890 38999 36 6 2 chr6 130199330 130203993 -52211249 + HERVK11D LTR ERVK 3073 7752 0 7228 47 26 0 chr6 130203993 130204867 -52210375 + MER11D LTR ERVK 1 897 0 332 291 86 14 chr6 130204900 130205110 -52210132 - L1MEd LINE L1 -3769 2360 2136 338 355 56 45 chr6 130205778 130206133 -52209109 - L1MEd LINE L1 -4864 1255 897 588 308 146 22 chr6 130206681 130207188 -52208054 + L1ME LINE L1 3125 3694 -2452 600 266 31 62 chr6 130207278 130207631 -52207611 + L1ME LINE L1 4528 4869 -1277 321 263 82 47 chr6 130207664 130207835 -52207407 + L1ME LINE L1 5273 5449 -713 248 305 61 8 chr6 130207838 130207969 -52207273 + L1ME LINE L1 145 282 -5923 220 216 0 0 chr6 130208154 130208205 -52207037 + T-rich Low_complexity Low_complexity 1 51 0 269 250 10 73 chr6 130208608 130208704 -52206538 + MER21B LTR ERV1 1 90 -773 1232 260 71 25 chr6 130208755 130209147 -52206095 + MER21B LTR ERV1 95 504 -359 1077 214 92 33 chr6 130209226 130209530 -52205712 + MER21B LTR ERV1 491 812 -51 2326 239 66 31 chr6 130209548 130210517 -52204725 + L1ME LINE L1 2009 3000 -3215 286 231 56 9 chr6 130210509 130210617 -52204625 + L1ME3A LINE L1 6042 6154 -16 * 21 0 0 0 chr6 130213926 130213947 -52201295 + AT_rich Low_complexity Low_complexity 1 21 0 971 216 44 0 chr6 130214560 130214764 -52200478 + MSTB1 LTR MaLR 220 432 0 348 253 0 40 chr6 130214833 130214932 -52200310 - L1MC/D LINE L1 -2020 5788 5694 * 519 279 46 50 chr6 130214918 130215146 -52200096 - L1ME LINE L1 -407 5757 5519 277 294 77 98 chr6 130216133 130216327 -52198915 - MIR3 SINE MIR -2 206 17 3551 101 44 21 chr6 130217087 130217284 -52197958 + L1PB1 LINE L1 5576 5767 -384 288 0 0 0 chr6 130217284 130217316 -52197926 + (CA)n Simple_repeat Simple_repeat 2 33 0 3551 101 44 21 chr6 130217316 130217681 -52197561 + L1PB1 LINE L1 5767 6151 0 29 0 0 0 chr6 130217716 130217745 -52197497 + AT_rich Low_complexity Low_complexity 1 29 0 1362 157 4 63 chr6 130218874 130219142 -52196100 + THE1A LTR MaLR 102 353 -2 1751 97 0 45 chr6 130219144 130219412 -52195830 + THE1A-int LTR MaLR 1 256 -1324 1164 164 26 40 chr6 130219412 130219638 -52195604 + THE1A LTR MaLR 63 285 -70 9369 109 8 1 chr6 130219642 130220954 -52194288 + THE1A-int LTR MaLR 261 1580 0 2072 129 5 51 chr6 130220954 130221326 -52193916 + THE1A LTR MaLR 1 355 0 1627 179 7 11 chr6 130222353 130222633 -52192609 + AluJo SINE Alu 14 292 -20 2244 138 28 3 chr6 130223454 130223809 -52191433 + THE1B LTR MaLR 1 364 0 9288 115 34 55 chr6 130223809 130225088 -52190154 + THE1B-int LTR MaLR 1 1242 -338 2388 78 0 0 chr6 130225088 130225384 -52189858 + AluY SINE Alu 7 302 -9 9288 115 34 55 chr6 130225384 130225717 -52189525 + THE1B-int LTR MaLR 1242 1580 0 1692 117 8 0 chr6 130225717 130225956 -52189286 + THE1B LTR MaLR 6 246 -118 5651 138 44 7 chr6 130225958 130227279 -52187963 + L1M1 LINE L1 4234 5609 -696 395 246 230 0 chr6 130227370 130227496 -52187746 - MIR SINE MIR -87 175 21 964 191 103 10 chr6 130227619 130227823 -52187419 - MER58A DNA MER1_type -1 223 1 3809 209 60 86 chr6 130228843 130230019 -52185223 + L1MEc LINE L1 2182 3335 -2880 2001 75 38 8 chr6 130230019 130230285 -52184957 + AluY SINE Alu 24 297 -14 3809 209 60 86 chr6 130230285 130230727 -52184515 + L1MEc LINE L1 3335 3787 -2428 1295 85 26 5 chr6 130230723 130230912 -52184330 + L1PA13 LINE L1 5938 6130 -33 * 664 256 50 53 chr6 130230951 130231271 -52183971 + L1MEc LINE L1 3782 4100 -2115 239 325 0 0 chr6 130231328 130231342 -52183900 - L1MA10 LINE L1 0 6334 6321 2417 227 82 63 chr6 130231342 130232419 -52182823 - L1ME1 LINE L1 -5 6161 5061 2861 264 143 29 chr6 130232542 130233742 -52181500 + L2 LINE L2 613 1948 -1366 23 0 0 0 chr6 130234218 130234241 -52181001 + AT_rich Low_complexity Low_complexity 1 23 0 2245 94 7 0 chr6 130235733 130236032 -52179210 - AluSc SINE Alu -8 301 1 483 250 88 25 chr6 130239210 130239370 -52175872 + MIR SINE MIR 20 189 -73 489 331 150 28 chr6 130239374 130239807 -52175435 + L2 LINE L2 2770 3251 -62 268 226 16 0 chr6 130239829 130239891 -52175351 + MIR SINE MIR 182 244 -18 1086 140 0 0 chr6 130240729 130240908 -52174334 + (TA)n Simple_repeat Simple_repeat 2 180 0 258 343 0 0 chr6 130241165 130241235 -52174007 - MER5B DNA MER1_type -80 98 29 544 234 206 27 chr6 130241650 130241834 -52173408 - MIR SINE MIR -2 260 44 544 341 128 26 chr6 130242481 130242871 -52172371 - L3 LINE CR1 -894 683 254 1919 158 0 13 chr6 130243469 130243773 -52171469 - AluJb SINE Alu -12 300 1 722 249 45 25 chr6 130244679 130244880 -52170362 - L2 LINE L2 -7 3306 3102 2390 57 7 0 chr6 130245452 130245750 -52169492 - AluY SINE Alu -11 300 1 28 0 0 0 chr6 130246017 130246045 -52169197 + AT_rich Low_complexity Low_complexity 1 28 0 646 208 110 12 chr6 130246118 130246291 -52168951 + MIR SINE MIR 4 193 -69 1486 230 54 41 chr6 130247250 130247711 -52167531 + MLT1C LTR MaLR 1 467 0 270 0 0 0 chr6 130247812 130247842 -52167400 + (T)n Simple_repeat Simple_repeat 1 30 0 1939 155 77 3 chr6 130248058 130248420 -52166822 - MLT1B LTR MaLR -1 389 1 233 296 113 0 chr6 130249409 130249524 -52165718 - L2 LINE L2 -6 3307 3180 1993 138 10 0 chr6 130249695 130249985 -52165257 - AluSx SINE Alu -19 293 1 651 268 79 24 chr6 130250222 130250500 -52164742 - L1PA5 LINE L1 -298 5856 5564 6423 86 3 2 chr6 130250911 130251797 -52163445 - L1PA7 LINE L1 -1954 4192 3306 8732 69 7 5 chr6 130251798 130253740 -52161502 + L1PA7 LINE L1 4224 6167 0 187 301 14 41 chr6 130253951 130254024 -52161218 + MIR SINE MIR 77 147 -61 3886 51 0 0 chr6 130255537 130256028 -52159214 - L1PA5 LINE L1 -3247 2899 2409 19411 51 7 1 chr6 130256028 130259260 -52155982 + L1PA5 LINE L1 2912 6148 -6 21 0 0 0 chr6 130260039 130260060 -52155182 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr6 130260120 130260169 -52155073 + AT_rich Low_complexity Low_complexity 1 49 0 376 282 90 71 chr6 130260294 130260560 -52154682 + L1M4 LINE L1 4497 4767 -1379 44 35 0 0 chr6 130261695 130261753 -52153489 + AT_rich Low_complexity Low_complexity 1 58 0 214 302 0 0 chr6 130262295 130262381 -52152861 + (TA)n Simple_repeat Simple_repeat 2 87 0 196 276 52 0 chr6 130263521 130263579 -52151663 + L2 LINE L2 3250 3310 -3 21 36 0 0 chr6 130265053 130265081 -52150161 + AT_rich Low_complexity Low_complexity 1 28 0 37 0 0 21 chr6 130265480 130265499 -52149743 + AT_rich Low_complexity Low_complexity 1 19 -28 2269 71 0 0 chr6 130265499 130265782 -52149460 + AluY SINE Alu 12 294 -17 37 0 0 21 chr6 130265782 130265810 -52149432 + AT_rich Low_complexity Low_complexity 19 47 0 321 283 182 5 chr6 130265810 130265997 -52149245 - L2 LINE L2 0 3313 3094 23 0 0 0 chr6 130267201 130267224 -52148018 + AT_rich Low_complexity Low_complexity 1 23 0 31 58 0 0 chr6 130268219 130268271 -52146971 + AT_rich Low_complexity Low_complexity 1 52 0 1119 210 206 89 chr6 130269042 130269422 -52145820 + MER20B DNA MER1_type 2 336 -447 2047 104 0 0 chr6 130269422 130269690 -52145552 + AluSg SINE Alu 11 278 -32 1119 210 206 89 chr6 130269690 130269984 -52145258 + MER20B DNA MER1_type 336 755 -28 308 350 55 12 chr6 130272457 130272620 -52142622 + MER5B DNA MER1_type 2 171 -7 1941 158 0 0 chr6 130272938 130273242 -52142000 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr6 130273479 130273502 -52141740 + AT_rich Low_complexity Low_complexity 1 23 0 228 67 0 0 chr6 130273605 130273635 -52141607 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 27 29 0 0 chr6 130274953 130274987 -52140255 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr6 130275886 130275914 -52139328 + AT_rich Low_complexity Low_complexity 1 28 0 311 364 50 7 chr6 130276185 130276325 -52138917 + MIR SINE MIR 111 256 -6 257 319 32 64 chr6 130276722 130276879 -52138363 - L2 LINE L2 -279 3034 2883 180 337 10 61 chr6 130277073 130277171 -52138071 + L2 LINE L2 2661 2753 -561 197 333 208 0 chr6 130277248 130277344 -52137898 - L2 LINE L2 -1 3312 3197 1587 257 98 8 chr6 130277404 130277913 -52137329 + L2 LINE L2 2201 2755 -559 273 224 196 21 chr6 130278164 130278307 -52136935 + L2 LINE L2 3097 3264 -49 1142 158 14 5 chr6 130278618 130278827 -52136415 - L1 LINE L1 -2059 5506 5296 * 4423 238 93 17 chr6 130278818 130280792 -52134450 - L1 LINE L1 -3557 4008 1878 362 319 55 51 chr6 130281433 130281706 -52133536 - L2 LINE L2 -962 2352 2079 21 0 0 0 chr6 130284203 130284224 -52131018 + AT_rich Low_complexity Low_complexity 1 21 0 1475 250 0 19 chr6 130284323 130284695 -52130547 + MLT1A1 LTR MaLR 1 365 0 1413 145 137 0 chr6 130284733 130284982 -52130260 + MER47A DNA MER2_type 84 366 0 2231 112 0 0 chr6 130285718 130286014 -52129228 + AluSx SINE Alu 1 296 -16 1824 178 169 5 chr6 130287755 130288188 -52127054 + MER34 LTR ERV1 27 530 -12 237 305 12 0 chr6 130289181 130289263 -52125979 + (CA)n Simple_repeat Simple_repeat 2 84 0 847 321 134 22 chr6 130290858 130291673 -52123569 + L1MEc LINE L1 34 939 -5457 843 265 43 43 chr6 130291697 130291895 -52123347 + L1ME2 LINE L1 5751 5951 -213 1025 184 22 61 chr6 130291895 130292123 -52123119 + MER20 DNA MER1_type 1 219 0 843 265 43 43 chr6 130292123 130292317 -52122925 + L1ME2 LINE L1 5950 6143 -21 2449 56 0 7 chr6 130294363 130294666 -52120576 - AluY SINE Alu -10 301 1 517 311 88 7 chr6 130296559 130296884 -52118358 - L2 LINE L2 -5 3308 2919 891 180 90 0 chr6 130296907 130297146 -52118096 + L1M4 LINE L1 5227 5486 -698 544 213 31 16 chr6 130297156 130297283 -52117959 + L1M4 LINE L1 5569 5697 -487 2320 188 66 14 chr6 130297283 130297767 -52117475 + LTR22 LTR ERVK 1 509 0 183 156 0 0 chr6 130298766 130298798 -52116444 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2550 268 164 9 chr6 130299796 130300762 -52114480 - L2 LINE L2 -558 2756 1642 2280 165 47 6 chr6 130300797 130301264 -52113978 + L1MA8 LINE L1 5806 6291 0 706 176 35 42 chr6 130301641 130301783 -52113459 - MLT2D LTR ERVL 0 414 274 829 335 49 9 chr6 130301785 130302113 -52113129 - L2 LINE L2 -1684 1630 1290 4969 133 22 24 chr6 130302340 130303105 -52112137 - L1PA16 LINE L1 -7 7597 6833 2410 79 0 3 chr6 130303105 130303409 -52111833 - AluY SINE Alu -6 305 3 4969 133 22 24 chr6 130303409 130303513 -52111729 - L1PA16 LINE L1 -771 6833 6730 6482 77 5 8 chr6 130303516 130304138 -52111104 - L1PA7 LINE L1 -11 6143 5521 1767 138 0 0 chr6 130304138 130304399 -52110843 - AluSx SINE Alu -17 295 35 6482 77 5 8 chr6 130304399 130305535 -52109707 - L1PA7 LINE L1 -633 5521 4399 21601 136 15 81 chr6 130305535 130309968 -52105274 - L1PA7 LINE L1 -1996 4150 12 316 175 0 0 chr6 130309974 130310037 -52105205 - L1PA16 LINE L1 -850 6754 6692 * 1304 220 23 3 chr6 130310028 130310333 -52104909 + L1P LINE L1 4949 5259 -887 * 2277 209 13 15 chr6 130310328 130310854 -52104388 - L1 LINE L1 -1296 4850 4326 10693 239 25 20 chr6 130310970 130314751 -52100491 - L1PA16 LINE L1 -1513 6071 2256 1943 173 14 12 chr6 130315444 130315790 -52099452 - MER7A DNA MER2_type -1 345 1 21 57 0 0 chr6 130316540 130316575 -52098667 + AT_rich Low_complexity Low_complexity 1 35 0 6457 78 0 37 chr6 130317150 130318344 -52096898 - L1PA11 LINE L1 -16 6158 4959 1912 146 40 0 chr6 130318344 130318667 -52096575 + L1P LINE L1 3983 4318 -1828 * 42947 30 24 1 chr6 130318665 130324675 -52090567 + L1HS LINE L1 8 6155 0 3979 159 1 1 chr6 130324675 130325362 -52089880 + L1P LINE L1 4303 4989 -1157 257 128 21 0 chr6 130326076 130326123 -52089119 + (CA)n Simple_repeat Simple_repeat 2 49 0 543 276 59 71 chr6 130326903 130327491 -52087751 + L1MC5 LINE L1 7243 7730 -231 380 288 31 12 chr6 130327579 130327739 -52087503 + L1MC5 LINE L1 7763 7925 -36 194 217 145 0 chr6 130327758 130327827 -52087415 - L2 LINE L2 -215 3098 3020 1050 117 61 12 chr6 130328057 130328220 -52087022 + THE1B LTR MaLR 194 364 0 5368 75 16 1 chr6 130328224 130328927 -52086315 + HERVL-A2 LTR ERVL 4942 5654 0 3212 103 2 30 chr6 130328927 130329393 -52085849 + MLT2A2 LTR ERVL 1 453 0 327 233 46 117 chr6 130330269 130330552 -52084690 + HAL1b LINE L1 199 461 -887 467 303 27 54 chr6 130330668 130330698 -52084544 - L2 LINE L2 -767 2547 2518 1530 192 31 7 chr6 130330698 130330984 -52084258 + AluJb SINE Alu 3 295 -17 467 303 27 54 chr6 130330984 130331138 -52084104 - L2 LINE L2 -796 2518 2368 432 315 67 52 chr6 130331394 130331858 -52083384 + L1M4 LINE L1 3749 4219 -1927 966 299 49 53 chr6 130331910 130332361 -52082881 - L2 LINE L2 -15 3298 2850 778 164 88 31 chr6 130332362 130332521 -52082721 + Tigger4(Zombi) DNA MER2_type 1 168 -2563 2215 88 0 18 chr6 130332561 130332846 -52082396 - AluSg SINE Alu -30 280 1 3300 110 46 20 chr6 130332850 130333069 -52082173 + Tigger4(Zombi) DNA MER2_type 2174 2386 -345 2474 126 49 49 chr6 130333069 130333497 -52081745 + MSTA LTR MaLR 1 428 0 3300 110 46 20 chr6 130333497 130333821 -52081421 + Tigger4(Zombi) DNA MER2_type 2386 2731 0 638 264 44 125 chr6 130333824 130333856 -52081386 - L2 LINE L2 -466 2848 2815 1834 116 91 28 chr6 130333856 130334209 -52081033 - THE1C LTR MaLR 0 375 1 638 264 44 125 chr6 130334209 130334472 -52080770 - L2 LINE L2 -499 2815 2577 1175 242 56 40 chr6 130334514 130335029 -52080213 + MLT1E LTR MaLR 10 593 0 258 226 8 16 chr6 130335115 130335239 -52080003 + (TA)n Simple_repeat Simple_repeat 2 124 0 210 71 0 0 chr6 130335242 130335270 -52079972 + (TG)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr6 130335603 130335625 -52079617 + AT_rich Low_complexity Low_complexity 1 22 0 306 335 118 0 chr6 130335716 130335868 -52079374 - MIR SINE MIR -7 255 86 4544 172 22 27 chr6 130336058 130337162 -52078080 + L1MA4 LINE L1 4511 5616 -684 2309 116 126 5 chr6 130337162 130337542 -52077700 + MSTA LTR MaLR 1 426 -2 4544 172 22 27 chr6 130337542 130337903 -52077339 + L1MA4 LINE L1 5616 5977 -323 540 160 0 0 chr6 130337903 130338002 -52077240 + L1MA4 LINE L1 6197 6296 -4 24 91 0 0 chr6 130338861 130338927 -52076315 + AT_rich Low_complexity Low_complexity 1 66 0 195 69 0 0 chr6 130338983 130339012 -52076230 + (TG)n Simple_repeat Simple_repeat 2 30 0 816 325 73 33 chr6 130340191 130340741 -52074501 + HERVL LTR ERVL 2726 3297 -2357 285 325 88 50 chr6 130340774 130341057 -52074185 - MERVL LTR ERVL -1352 4133 3840 363 365 18 6 chr6 130341266 130341436 -52073806 - MERVL LTR ERVL -2193 3571 3400 538 286 22 39 chr6 130341443 130341621 -52073621 + HERVL LTR ERVL 4155 4329 -1325 790 290 82 10 chr6 130341694 130341987 -52073255 + HERVL LTR ERVL 4495 4808 -956 529 322 42 67 chr6 130342078 130342525 -52072717 + HERVL LTR ERVL 4945 5380 -384 284 253 23 11 chr6 130342842 130342929 -52072313 + MIR SINE MIR 173 260 -2 227 253 41 75 chr6 130342963 130343109 -52072133 + HAL1 LINE L1 1988 2128 -379 675 295 108 88 chr6 130343113 130343510 -52071732 - HAL1 LINE L1 -1972 535 131 639 180 120 16 chr6 130343523 130343706 -52071536 + HAL1 LINE L1 1655 1856 -651 663 278 49 71 chr6 130343924 130344190 -52071052 + MIR SINE MIR 2 261 -1 887 262 80 52 chr6 130344220 130344736 -52070506 + HAL1 LINE L1 1978 2507 0 222 141 21 120 chr6 130345335 130345477 -52069765 + (TTATA)n Simple_repeat Simple_repeat 1 128 0 525 16 0 0 chr6 130346016 130346078 -52069164 + (CA)n Simple_repeat Simple_repeat 2 63 0 459 292 18 12 chr6 130346134 130346305 -52068937 + CT-rich Low_complexity Low_complexity 3 174 0 250 274 15 0 chr6 130346984 130347119 -52068123 + (TA)n Simple_repeat Simple_repeat 2 138 0 27 0 0 0 chr6 130347339 130347366 -52067876 + AT_rich Low_complexity Low_complexity 1 27 0 2935 80 57 7 chr6 130347627 130348009 -52067233 + MLT2A1 LTR ERVL 1 407 -37 261 0 0 0 chr6 130348009 130348038 -52067204 + (TA)n Simple_repeat Simple_repeat 2 30 0 2935 80 57 7 chr6 130348038 130348078 -52067164 + MLT2A1 LTR ERVL 407 444 0 43057 79 8 7 chr6 130348079 130353725 -52061517 + HERVL-A1 LTR ERVL 2 5654 0 2839 94 20 8 chr6 130353725 130354120 -52061122 + MLT2A1 LTR ERVL 1 400 -44 431 112 60 0 chr6 130354121 130354237 -52061005 + (TA)n Simple_repeat Simple_repeat 1 123 0 301 151 19 0 chr6 130354248 130354301 -52060941 + MLT2A1 LTR ERVL 400 453 0 2428 72 0 3 chr6 130354427 130354733 -52060509 + AluY SINE Alu 1 305 -6 221 271 34 0 chr6 130354909 130354968 -52060274 + L2 LINE L2 3252 3312 -1 24 53 0 0 chr6 130355540 130355578 -52059664 + AT_rich Low_complexity Low_complexity 1 38 0 195 184 0 0 chr6 130355582 130355620 -52059622 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr6 130356162 130356184 -52059058 + AT_rich Low_complexity Low_complexity 1 22 0 301 384 16 0 chr6 130357051 130357176 -52058066 + L2 LINE L2 3183 3309 -4 1236 243 112 19 chr6 130357369 130357851 -52057391 + HAL1b LINE L1 822 1348 0 1162 300 99 60 chr6 130357947 130358717 -52056525 - L2 LINE L2 -921 2393 1594 495 260 240 10 chr6 130359528 130359724 -52055518 - MIR SINE MIR -21 241 1 628 211 16 65 chr6 130361203 130361256 -52053986 - MER5B DNA MER1_type -2 176 122 207 0 0 0 chr6 130361256 130361279 -52053963 + (GAA)n Simple_repeat Simple_repeat 2 24 0 628 211 16 65 chr6 130361279 130361410 -52053832 - MER5B DNA MER1_type -56 122 1 746 196 11 43 chr6 130361598 130361782 -52053460 + MER5B DNA MER1_type 1 178 0 2366 99 0 0 chr6 130361887 130362190 -52053052 + AluSg SINE Alu 1 303 -7 1064 237 74 72 chr6 130364080 130364166 -52051076 + MLT1C LTR MaLR 34 118 -349 2446 124 24 14 chr6 130364166 130364537 -52050705 - THE1C LTR MaLR 0 375 1 1064 237 74 72 chr6 130364537 130364881 -52050361 + MLT1C LTR MaLR 118 465 -2 710 267 93 32 chr6 130364994 130365116 -52050126 - MIR SINE MIR 0 262 149 2202 179 13 19 chr6 130365116 130365581 -52049661 - L1MA10 LINE L1 -13 6321 5860 710 267 93 32 chr6 130365581 130365705 -52049537 - MIR SINE MIR -113 149 1 756 281 77 46 chr6 130366113 130366504 -52048738 + L1MC/D LINE L1 5254 5656 -2152 894 244 127 51 chr6 130366505 130366837 -52048405 + MLT1E3 LTR MaLR 1 357 -267 614 200 33 0 chr6 130366837 130366957 -52048285 + MLT1E3 LTR MaLR 501 624 0 546 233 89 0 chr6 130366957 130367103 -52048139 + L1MC/D LINE L1 5653 5811 -1997 2262 107 0 6 chr6 130367348 130367684 -52047558 - L1PB1 LINE L1 -64 6087 5754 357 325 8 17 chr6 130367826 130367946 -52047296 + L2 LINE L2 3154 3272 0 314 23 23 0 chr6 130367952 130367995 -52047247 + (CA)n Simple_repeat Simple_repeat 2 45 0 8976 181 19 13 chr6 130367995 130368417 -52046825 + L1PA14 LINE L1 3295 3713 -2433 2185 110 3 23 chr6 130368417 130368727 -52046515 - AluSq SINE Alu -9 304 1 8976 181 19 13 chr6 130368727 130369425 -52045817 + L1PA14 LINE L1 3713 4430 -1716 910 0 9 9 chr6 130369425 130369536 -52045706 + (TAAAA)n Simple_repeat Simple_repeat 2 112 0 8976 181 19 13 chr6 130369536 130370201 -52045041 + L1PA14 LINE L1 4430 5090 -1056 5034 245 17 34 chr6 130370208 130371311 -52043931 - MER52A LTR ERV1 -7 1748 664 261 200 36 0 chr6 130371284 130371339 -52043903 - MER52A LTR ERV1 -1485 270 214 * 477 265 0 0 chr6 130371326 130371428 -52043814 - MER52A LTR ERV1 -1653 102 1 2412 144 26 5 chr6 130371428 130371975 -52043267 + L1PA14 LINE L1 5087 5642 -519 2802 107 30 20 chr6 130371975 130372415 -52042827 + MLT2A1 LTR ERVL 1 444 0 2827 68 0 5 chr6 130372415 130372855 -52042387 + HERVL-A1 LTR ERVL 1 475 -5179 * 3921 87 14 0 chr6 130372831 130373348 -52041894 + HERVL LTR ERVL 2157 2680 -2974 2509 132 35 7 chr6 130373362 130373785 -52041457 + L1PA14 LINE L1 5726 6160 -1 305 374 109 16 chr6 130373855 130374168 -52041074 - L2 LINE L2 -834 2480 2139 520 88 0 0 chr6 130374313 130374378 -52040864 + THE1C LTR MaLR 1 65 -310 1960 49 0 8 chr6 130374378 130374624 -52040618 + MLT2A1 LTR ERVL 1 244 -200 348 65 0 0 chr6 130374660 130374706 -52040536 + MLT2A1 LTR ERVL 408 453 0 2055 113 43 0 chr6 130374706 130375008 -52040234 + THE1C LTR MaLR 61 375 0 197 342 60 69 chr6 130375040 130375359 -52039883 - L2 LINE L2 -1411 1903 1588 14035 142 32 6 chr6 130375656 130376600 -52038642 + Tigger1 DNA MER2_type 1 919 -1499 2220 125 0 0 chr6 130376600 130376912 -52038330 - AluSx SINE Alu 0 312 1 14035 142 32 6 chr6 130376912 130378323 -52036919 + Tigger1 DNA MER2_type 919 2418 0 248 284 14 71 chr6 130379945 130380086 -52035156 + L2 LINE L2 2725 2857 -457 302 306 121 32 chr6 130380457 130380581 -52034661 - MIR3 SINE MIR -41 167 33 372 296 56 16 chr6 130382089 130382214 -52033028 - L2 LINE L2 0 3272 3143 1502 97 26 18 chr6 130382923 130383150 -52032092 + MER30 DNA MER1_type 2 230 0 4233 248 107 16 chr6 130383269 130385081 -52030161 - L1M4 LINE L1 -1918 4228 2253 1031 232 84 80 chr6 130385277 130385739 -52029503 - L1MC5 LINE L1 -430 7531 7065 1604 155 80 44 chr6 130385739 130386101 -52029141 + THE1C LTR MaLR 1 375 0 1031 232 84 80 chr6 130386101 130386198 -52029044 - L1MC5 LINE L1 -896 7065 6970 241 184 0 0 chr6 130386288 130386326 -52028916 - L2 LINE L2 -19 3294 3257 228 231 0 0 chr6 130386620 130386672 -52028570 - L1MC4 LINE L1 -1339 6703 6652 243 50 50 0 chr6 130386710 130386750 -52028492 - L1PB1 LINE L1 -2 6149 6108 2035 117 7 3 chr6 130386765 130387074 -52028168 - L1PB1 LINE L1 -2 6149 5840 642 247 0 0 chr6 130387081 130387231 -52028011 - L1P LINE L1 -1152 4994 4845 4375 158 12 12 chr6 130387233 130388699 -52026543 - L1P5 LINE L1 -332 5819 4355 * 4534 174 12 8 chr6 130388682 130389892 -52025350 - L1PBa LINE L1 -2989 3873 2598 1654 102 0 0 chr6 130439892 130440118 -51975124 + AluSx SINE Alu 63 288 -24 857 222 96 9 chr6 130441925 130442155 -51973087 - MER20B DNA MER1_type -261 522 273 525 259 57 69 chr6 130442255 130442517 -51972725 - MER20B DNA MER1_type -502 281 23 775 218 0 0 chr6 130442792 130442925 -51972317 - FLAM_A SINE Alu 0 133 1 25 31 0 0 chr6 130443021 130443053 -51972189 + AT_rich Low_complexity Low_complexity 1 32 0 355 268 117 11 chr6 130443074 130443346 -51971896 + L1MEc LINE L1 2167 2426 -3789 797 287 20 0 chr6 130443577 130443779 -51971463 + LTR16A LTR ERVL 233 438 -12 197 263 26 26 chr6 130444037 130444113 -51971129 + MIR SINE MIR 187 262 0 25 0 0 0 chr6 130445355 130445380 -51969862 + AT_rich Low_complexity Low_complexity 1 25 0 694 279 113 33 chr6 130445412 130445954 -51969288 - L1MC5 LINE L1 -47 7914 7330 2901 226 72 23 chr6 130445958 130446899 -51968343 + MER45B DNA AcHobo 5 1040 0 2193 120 0 0 chr6 130447227 130447528 -51967714 - AluSg SINE Alu -9 301 1 2393 88 0 3 chr6 130447828 130448136 -51967106 - AluSx SINE Alu -5 307 1 751 311 144 3 chr6 130448404 130448703 -51966539 - MLT1J LTR MaLR -170 341 1 255 325 47 24 chr6 130448781 130448822 -51966420 - LTR67 LTR ERVL -24 533 494 2321 101 0 25 chr6 130448822 130449140 -51966102 + AluY SINE Alu 1 310 -1 255 325 47 24 chr6 130449140 130449267 -51965975 - LTR67 LTR ERVL -63 494 361 277 355 64 35 chr6 130449848 130450192 -51965050 + L2 LINE L2 2222 2575 -739 187 75 0 50 chr6 130450195 130450235 -51965007 + (TTATA)n Simple_repeat Simple_repeat 3 40 0 459 62 0 0 chr6 130450350 130450415 -51964827 - L1PB3 LINE L1 -8 6146 6082 1336 213 23 46 chr6 130450668 130451062 -51964180 - L1ME1 LINE L1 -44 6122 5738 2207 117 3 0 chr6 130451898 130452197 -51963045 + AluSg SINE Alu 1 300 -10 865 263 107 12 chr6 130452673 130453019 -51962223 + L1ME4a LINE L1 5505 5883 -238 378 312 74 72 chr6 130453149 130453540 -51961702 + HAL1 LINE L1 2114 2505 -2 345 333 50 33 chr6 130453951 130454071 -51961171 - L2 LINE L2 -29 3243 3122 437 208 113 0 chr6 130454856 130454962 -51960280 + HAL1 LINE L1 6 123 -2384 1192 278 34 37 chr6 130455502 130456178 -51959064 + L2 LINE L2 2199 3084 -229 257 286 118 0 chr6 130456353 130456472 -51958770 + L2 LINE L2 3176 3308 -5 1104 267 93 30 chr6 130456474 130457014 -51958228 + HAL1 LINE L1 1774 2347 -160 727 124 62 9 chr6 130457014 130457127 -51958115 + FLAM_C SINE Alu 1 119 -14 42 20 0 0 chr6 130457128 130457177 -51958065 + AT_rich Low_complexity Low_complexity 1 49 0 295 268 45 67 chr6 130457177 130457356 -51957886 + HAL1 LINE L1 2333 2507 0 407 276 33 62 chr6 130457612 130457887 -51957355 - L1ME3A LINE L1 -202 5951 5685 324 285 190 0 chr6 130457893 130458051 -51957191 - L1ME3A LINE L1 -1810 4319 4132 316 299 75 50 chr6 130458359 130458560 -51956682 - L1ME3A LINE L1 -5906 213 8 186 65 43 22 chr6 130458715 130458761 -51956481 + T-rich Low_complexity Low_complexity 4 50 0 1972 138 21 55 chr6 130459565 130459950 -51955292 - THE1C LTR MaLR -3 372 1 479 303 106 14 chr6 130459995 130460203 -51955039 + MIR SINE MIR 21 247 -15 646 178 0 0 chr6 130460398 130460499 -51954743 + U6 snRNA snRNA 1 101 -6 29 28 0 0 chr6 130460499 130460535 -51954707 + AT_rich Low_complexity Low_complexity 1 36 0 1698 185 14 0 chr6 130460707 130460994 -51954248 - AluJb SINE Alu -21 291 1 679 256 38 0 chr6 130461387 130461547 -51953695 - MLT1F1 LTR MaLR -7 560 395 417 325 31 25 chr6 130461553 130461910 -51953332 + HAL1 LINE L1 1034 1392 -1115 192 77 0 0 chr6 130461938 130461964 -51953278 + (A)n Simple_repeat Simple_repeat 1 26 0 1245 257 107 74 chr6 130461986 130462783 -51952459 + HAL1 LINE L1 1672 2494 -13 389 195 0 0 chr6 130463557 130463639 -51951603 + L1MA9 LINE L1 6209 6290 -22 21 36 0 0 chr6 130463830 130463858 -51951384 + AT_rich Low_complexity Low_complexity 1 28 0 1720 173 3 3 chr6 130465960 130466244 -51948998 - AluJo SINE Alu -16 296 13 2397 70 3 20 chr6 130466501 130466803 -51948439 + AluSp SINE Alu 1 297 -16 812 293 19 34 chr6 130467316 130467579 -51947663 - MIR SINE MIR -3 259 1 21 82 0 0 chr6 130468011 130468060 -51947182 + AT_rich Low_complexity Low_complexity 1 49 0 196 337 30 20 chr6 130468097 130468198 -51947044 + L3 LINE CR1 1265 1366 -211 2335 182 9 2 chr6 130469456 130469890 -51945352 + L1MC3 LINE L1 6251 6687 -1098 * 4090 176 70 29 chr6 130469887 130470011 -51945231 + L1MC3 LINE L1 6577 6695 -1090 2340 86 7 7 chr6 130470011 130470314 -51944928 + AluSc SINE Alu 1 303 -6 4090 176 70 29 chr6 130470314 130470629 -51944613 + L1MC3 LINE L1 6695 6996 -789 186 103 0 0 chr6 130470629 130470658 -51944584 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4090 176 70 29 chr6 130470658 130471137 -51944105 + L1MC3 LINE L1 6996 7533 -252 * 6155 176 28 4 chr6 130471128 130471206 -51944036 + L1M1 LINE L1 6 81 -7484 378 0 0 0 chr6 130471206 130471248 -51943994 + (CA)n Simple_repeat Simple_repeat 2 43 0 6155 176 28 4 chr6 130471248 130472224 -51943018 + L1M1 LINE L1 81 1086 -6479 * 8084 174 47 28 chr6 130472214 130472877 -51942365 + L1M1 LINE L1 3887 4535 -3030 1818 169 20 0 chr6 130472877 130473172 -51942070 + AluJb SINE Alu 1 301 -11 8084 174 47 28 chr6 130473172 130473239 -51942003 + L1M1 LINE L1 4535 4599 -2966 1484 196 0 29 chr6 130473239 130473545 -51941697 + AluJb SINE Alu 12 308 -4 8084 174 47 28 chr6 130473545 130474004 -51941238 + L1M1 LINE L1 4599 5047 -2518 423 0 0 0 chr6 130474004 130474051 -51941191 + (CA)n Simple_repeat Simple_repeat 2 48 0 8084 174 47 28 chr6 130474051 130474846 -51940396 + L1M1 LINE L1 5047 5912 -1653 28707 107 6 19 chr6 130474848 130479800 -51935442 + L1PA7 LINE L1 600 5472 -682 2095 135 3 0 chr6 130479800 130480097 -51935145 + AluSg1 SINE Alu 1 298 -11 28707 107 6 19 chr6 130480097 130480769 -51934473 + L1PA7 LINE L1 5472 6151 -3 4143 162 8 26 chr6 130481037 130481927 -51933315 + L1M1 LINE L1 5897 6801 -923 1852 165 3 3 chr6 130481927 130482224 -51933018 + AluJb SINE Alu 1 297 -15 4143 162 8 26 chr6 130482224 130482346 -51932896 + L1M1 LINE L1 6801 6924 -800 3440 107 62 65 chr6 130482346 130483011 -51932231 - MER4A LTR ERV1 0 664 2 4143 162 8 26 chr6 130483011 130483162 -51932080 + L1M1 LINE L1 6924 7047 -677 30 59 0 0 chr6 130483274 130483325 -51931917 + AT_rich Low_complexity Low_complexity 1 51 0 28 0 0 0 chr6 130483723 130483751 -51931491 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 130483953 130483989 -51931253 + AT_rich Low_complexity Low_complexity 1 36 0 648 155 35 21 chr6 130483989 130484114 -51931128 - L1MA5 LINE L1 -2 6298 6169 375 23 0 0 chr6 130484114 130484158 -51931084 + (TA)n Simple_repeat Simple_repeat 2 45 0 648 155 35 21 chr6 130484158 130484174 -51931068 - L1MA5 LINE L1 -131 6169 6155 894 181 7 0 chr6 130484174 130484318 -51930924 - AluJb SINE Alu -34 278 134 4091 149 22 61 chr6 130484318 130484842 -51930400 - L1MA7 LINE L1 -122 6169 5626 695 110 0 0 chr6 130484842 130484942 -51930300 - HY3 scRNA scRNA -1 100 1 4091 149 22 61 chr6 130484942 130485488 -51929754 - L1MA7 LINE L1 -665 5626 5140 1801 189 3 3 chr6 130485488 130485794 -51929448 - AluJo SINE Alu -6 306 1 4091 149 22 61 chr6 130485794 130485853 -51929389 - L1MA7 LINE L1 -1151 5140 5080 928 197 5 5 chr6 130485853 130486046 -51929196 + MER58 DNA MER1_type 11 203 -2217 301 68 0 68 chr6 130486051 130486110 -51929132 + (CA)n Simple_repeat Simple_repeat 1 55 0 1655 207 0 14 chr6 130486114 130486477 -51928765 - L1MA7 LINE L1 -1062 5084 4727 2208 106 0 3 chr6 130486486 130486779 -51928463 + AluSx SINE Alu 1 292 -20 766 182 63 7 chr6 130487337 130487480 -51927762 - MER5A DNA MER1_type -3 186 36 341 119 17 0 chr6 130487612 130487671 -51927571 + Alu SINE Alu 242 301 0 2454 81 0 0 chr6 130487766 130488061 -51927181 - AluSg SINE Alu -15 295 1 2229 119 0 7 chr6 130489034 130489344 -51925898 + AluSg SINE Alu 1 308 -2 261 303 0 34 chr6 130489820 130489909 -51925333 + L2 LINE L2 44 129 -3185 * 716 255 242 7 chr6 130489903 130490201 -51925041 + L2 LINE L2 2946 3313 0 664 360 22 0 chr6 130490422 130490733 -51924509 + HAL1 LINE L1 2 319 -2188 317 295 167 51 chr6 130490754 130491044 -51924198 + HAL1 LINE L1 436 772 -1735 1770 292 72 20 chr6 130491044 130491639 -51923603 + MLT2E LTR ERVL 1 626 -2 317 295 167 51 chr6 130491639 130491684 -51923558 + HAL1 LINE L1 772 810 -1697 1342 255 134 21 chr6 130491725 130492540 -51922702 + HAL1 LINE L1 967 1873 -634 568 233 12 6 chr6 130492555 130492727 -51922515 + (CATA)n Simple_repeat Simple_repeat 4 176 0 247 287 271 0 chr6 130492823 130492945 -51922297 + HAL1 LINE L1 621 775 -1732 288 256 22 0 chr6 130493027 130493117 -51922125 - L1MC4 LINE L1 -1340 6702 6611 23 0 0 0 chr6 130493150 130493173 -51922069 + AT_rich Low_complexity Low_complexity 1 23 0 715 311 67 39 chr6 130493637 130493654 -51921588 + HAL1 LINE L1 1468 1483 -1024 2175 112 0 3 chr6 130493654 130493986 -51921256 - AluSq SINE Alu 0 332 2 715 311 67 39 chr6 130493986 130494427 -51920815 + HAL1 LINE L1 1483 1940 -567 278 247 84 63 chr6 130494469 130494659 -51920583 + LTR33A LTR ERVL 3 196 -327 1834 181 13 0 chr6 130494678 130494981 -51920261 - AluJb SINE Alu -5 307 1 233 212 25 59 chr6 130496100 130496218 -51919024 + (TCTCTG)n Simple_repeat Simple_repeat 2 115 0 527 217 8 8 chr6 130497824 130497953 -51917289 + L1M4 LINE L1 5340 5468 -710 618 166 93 20 chr6 130497953 130498104 -51917138 - MLT1D LTR MaLR 0 505 344 * 723 191 42 24 chr6 130498093 130498261 -51916981 - MSTA LTR MaLR -43 385 215 21 0 0 0 chr6 130498350 130498371 -51916871 + AT_rich Low_complexity Low_complexity 1 21 0 2133 125 0 3 chr6 130498409 130498706 -51916536 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr6 130498766 130498787 -51916455 + AT_rich Low_complexity Low_complexity 1 21 0 214 286 0 0 chr6 130499852 130499908 -51915334 - MIR SINE MIR -121 141 86 238 316 35 11 chr6 130500744 130500857 -51914385 - MIR SINE MIR -74 134 15 423 204 18 26 chr6 130501756 130501869 -51913373 + MER31A LTR ERV1 346 457 -28 2391 57 3 7 chr6 130501894 130502191 -51913051 - AluY SINE Alu -15 296 1 300 188 0 0 chr6 130502240 130502304 -51912938 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 357 248 0 0 chr6 130502363 130502476 -51912766 + (TA)n Simple_repeat Simple_repeat 1 113 0 453 259 54 32 chr6 130502858 130503043 -51912199 + MIR SINE MIR 68 256 -6 1867 181 3 3 chr6 130503371 130503680 -51911562 + AluJo SINE Alu 1 309 -3 2216 125 6 3 chr6 130504009 130504320 -51910922 - AluSx SINE Alu 0 312 1 890 125 0 0 chr6 130504371 130504507 -51910735 - L1PA16 LINE L1 -5 6161 6026 692 269 58 66 chr6 130504691 130505056 -51910186 - LTR16A1 LTR ERVL -45 412 51 181 62 0 94 chr6 130505244 130505276 -51909966 - MIR SINE MIR -5 257 229 2684 107 65 2 chr6 130505399 130505812 -51909430 - MLT2A2 LTR ERVL 0 453 15 2252 94 7 7 chr6 130506305 130506602 -51908640 + AluSq SINE Alu 1 297 -16 1218 200 0 18 chr6 130507131 130507351 -51907891 + MER20 DNA MER1_type 2 217 -2 1615 206 7 0 chr6 130507356 130507662 -51907580 + AluJo SINE Alu 1 308 -4 2381 101 0 0 chr6 130508063 130508370 -51906872 - AluSq SINE Alu -6 307 1 345 327 74 31 chr6 130508559 130508621 -51906621 + MIR SINE MIR 71 129 -133 459 0 0 0 chr6 130508621 130508672 -51906570 + (TA)n Simple_repeat Simple_repeat 2 52 0 345 327 74 31 chr6 130508672 130508771 -51906471 + MIR SINE MIR 129 239 -23 2413 97 3 0 chr6 130509407 130509715 -51905527 + AluSx SINE Alu 1 309 -3 639 259 47 19 chr6 130509837 130510049 -51905193 + HsTC2 DNA Tc2 1521 1738 -160 1050 191 57 0 chr6 130510078 130510272 -51904970 - AluJo SINE Alu -16 296 92 22 0 0 0 chr6 130510751 130510773 -51904469 + AT_rich Low_complexity Low_complexity 1 22 0 1738 201 61 27 chr6 130511679 130512121 -51903121 - LTR2B LTR ERV1 0 490 34 2665 104 60 29 chr6 130512533 130513080 -51902162 + MER4A LTR ERV1 1 663 -1 246 200 0 33 chr6 130513084 130513144 -51902098 + MLT1K LTR MaLR 346 403 -185 21 57 0 0 chr6 130513374 130513409 -51901833 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr6 130513600 130513624 -51901618 + AT_rich Low_complexity Low_complexity 1 24 0 2321 97 3 0 chr6 130514300 130514600 -51900642 - AluSx SINE Alu -6 306 6 248 383 58 8 chr6 130514602 130514722 -51900520 + L2 LINE L2 3147 3272 0 25 31 0 0 chr6 130514803 130514835 -51900407 + AT_rich Low_complexity Low_complexity 1 32 0 242 258 32 0 chr6 130514878 130514940 -51900302 - MIR SINE MIR -79 183 120 276 329 0 0 chr6 130515014 130515087 -51900155 - MIR SINE MIR -102 106 34 2340 38 41 10 chr6 130515958 130516250 -51898992 - AluY SINE Alu -10 301 1 200 59 29 0 chr6 130516616 130516650 -51898592 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 384 311 12 42 chr6 130516669 130516836 -51898406 - MER5A DNA MER1_type -11 178 17 2591 71 0 0 chr6 130516872 130517183 -51898059 + AluY SINE Alu 1 311 0 2392 101 0 0 chr6 130517454 130517761 -51897481 + AluSg SINE Alu 1 307 -3 730 244 36 50 chr6 130518236 130518366 -51896876 - MER58A DNA MER1_type -2197 223 93 2480 50 3 0 chr6 130518366 130518668 -51896574 + AluY SINE Alu 1 303 -8 730 244 36 50 chr6 130518668 130518704 -51896538 - MER58A DNA MER1_type -2327 93 58 495 87 0 0 chr6 130518704 130518773 -51896469 + (AATAG)n Simple_repeat Simple_repeat 3 71 0 730 244 36 50 chr6 130518773 130518826 -51896416 - MER58A DNA MER1_type -2362 58 6 22 56 0 0 chr6 130518901 130518937 -51896305 + AT_rich Low_complexity Low_complexity 1 36 0 302 275 44 11 chr6 130519252 130519343 -51895899 + MIR SINE MIR 108 201 -61 1040 289 63 47 chr6 130519743 130520197 -51895045 + L1ME3 LINE L1 1 465 -5605 1726 176 28 0 chr6 130520197 130520487 -51894755 + AluJb SINE Alu 1 298 -14 1040 289 63 47 chr6 130520487 130520541 -51894701 + L1ME3 LINE L1 465 517 -5553 3097 239 93 63 chr6 130521097 130521540 -51893702 + L1ME3 LINE L1 566 994 -5086 2458 65 0 0 chr6 130521540 130521834 -51893408 - AluY SINE Alu -17 294 1 3097 239 93 63 chr6 130521834 130522259 -51892983 + L1ME3 LINE L1 994 1405 -4675 2050 136 67 43 chr6 130522259 130522629 -51892613 + MSTA LTR MaLR 1 384 -44 1945 137 0 59 chr6 130522629 130522951 -51892291 - AluJb SINE Alu -4 308 6 2050 136 67 43 chr6 130522951 130522998 -51892244 + MSTA LTR MaLR 384 428 0 3097 239 93 63 chr6 130522998 130523597 -51891645 + L1ME3 LINE L1 1405 1984 -4096 2062 140 0 0 chr6 130523597 130523889 -51891353 + AluSg SINE Alu 1 292 -18 3097 239 93 63 chr6 130523889 130524151 -51891091 + L1ME3 LINE L1 1984 2237 -3843 646 209 8 8 chr6 130524151 130524280 -51890962 + FLAM_A SINE Alu 1 129 -4 3097 239 93 63 chr6 130524280 130524819 -51890423 + L1ME3 LINE L1 2237 2758 -3322 2149 128 3 0 chr6 130524819 130525115 -51890127 + AluSx SINE Alu 1 297 -15 3097 239 93 63 chr6 130525115 130525183 -51890059 + L1ME3 LINE L1 2758 2822 -3258 562 193 0 90 chr6 130525183 130525328 -51889914 + FLAM_C SINE Alu 1 132 -1 3097 239 93 63 chr6 130525328 130525427 -51889815 + L1ME3 LINE L1 2822 2917 -3163 1802 174 17 3 chr6 130525427 130525721 -51889521 + AluSx SINE Alu 1 298 -14 2318 85 0 3 chr6 130525721 130526016 -51889226 + AluSg SINE Alu 1 294 -16 3097 239 93 63 chr6 130526016 130526470 -51888772 + L1ME3 LINE L1 2917 3356 -2724 2207 131 0 0 chr6 130526470 130526767 -51888475 + AluSg SINE Alu 1 297 -13 3097 239 93 63 chr6 130526767 130526793 -51888449 + L1ME3 LINE L1 3356 3380 -2700 1541 188 15 4 chr6 130526793 130527064 -51888178 + AluJo SINE Alu 37 310 -2 3097 239 93 63 chr6 130527064 130527199 -51888043 + L1ME3 LINE L1 3380 3509 -2571 2272 81 34 3 chr6 130527199 130527496 -51887746 - AluY SINE Alu -5 306 1 3097 239 93 63 chr6 130527496 130527684 -51887558 + L1ME3 LINE L1 3509 3846 -2234 1690 170 14 11 chr6 130527684 130527993 -51887249 + AluJo SINE Alu 1 310 0 1023 58 0 0 chr6 130528011 130528132 -51887110 + AluYb8 SINE Alu 2 122 -196 2147 226 77 95 chr6 130528235 130528431 -51886811 + L1ME3 LINE L1 3860 4058 -2022 2312 103 0 3 chr6 130528431 130528732 -51886510 - AluSg SINE Alu -10 300 1 2147 226 77 95 chr6 130528732 130529907 -51885335 + L1ME3 LINE L1 4058 5208 -872 2215 122 0 0 chr6 130529907 130530202 -51885040 + AluSx SINE Alu 1 295 -17 2147 226 77 95 chr6 130530202 130530243 -51884999 + L1ME3 LINE L1 5208 5248 -832 558 266 125 41 chr6 130530240 130530409 -51884833 + L1ME3 LINE L1 5611 5764 -332 * 2372 93 0 6 chr6 130530409 130530721 -51884521 + AluSg SINE Alu 1 310 0 558 266 125 41 chr6 130530721 130530991 -51884251 + L1ME3 LINE L1 5764 6087 -9 2086 124 34 47 chr6 130531390 130531770 -51883472 - THE1C LTR MaLR 0 375 1 23 33 0 0 chr6 130532365 130532395 -51882847 + AT_rich Low_complexity Low_complexity 1 30 0 2321 92 0 7 chr6 130532628 130532934 -51882308 + AluY SINE Alu 1 304 -7 808 129 0 64 chr6 130533141 130533281 -51881961 - FLAM_C SINE Alu 0 133 3 599 130 11 2 chr6 130533813 130533937 -51881305 + L1MA4 LINE L1 5842 5966 -339 265 130 0 0 chr6 130534024 130534070 -51881172 - L1 LINE L1 -908 5238 5193 329 128 13 26 chr6 130534070 130534148 -51881094 + L1MA4 LINE L1 5975 6051 -249 2276 53 60 3 chr6 130534152 130534435 -51880807 + AluY SINE Alu 1 299 -12 27 0 0 26 chr6 130534468 130534490 -51880752 + AT_rich Low_complexity Low_complexity 1 23 -14 1285 133 58 0 chr6 130534490 130534730 -51880512 + L1MA4 LINE L1 6036 6289 -11 27 0 0 26 chr6 130534730 130534745 -51880497 + AT_rich Low_complexity Low_complexity 23 37 0 2207 101 3 3 chr6 130534895 130535193 -51880049 + AluSg SINE Alu 1 298 -12 500 180 72 0 chr6 130535201 130535312 -51879930 + MLT2B2 LTR ERVL 1 119 -396 2200 95 0 7 chr6 130536127 130536421 -51878821 + AluSq SINE Alu 1 292 -21 2410 88 3 0 chr6 130536592 130536898 -51878344 - AluSx SINE Alu -5 307 1 200 211 211 0 chr6 130537060 130537112 -51878130 + L2 LINE L2 3251 3313 0 183 80 0 0 chr6 130538287 130538312 -51876930 + (T)n Simple_repeat Simple_repeat 1 25 0 1050 209 5 0 chr6 130538314 130538505 -51876737 - AluJo SINE Alu -115 197 6 2060 129 3 0 chr6 130538530 130538825 -51876417 - AluSx SINE Alu -16 296 1 248 98 0 0 chr6 130540750 130540791 -51874451 + Alu SINE Alu 1 41 -260 1093 109 0 0 chr6 130540791 130540947 -51874295 + AluSq SINE Alu 146 301 -12 23 33 0 0 chr6 130545584 130545614 -51869628 + AT_rich Low_complexity Low_complexity 1 30 0 857 158 0 0 chr6 130545625 130545752 -51869490 + FLAM_C SINE Alu 2 128 -5 23 0 0 0 chr6 130546437 130546460 -51868782 + AT_rich Low_complexity Low_complexity 1 23 0 1992 98 0 52 chr6 130547343 130547521 -51867721 - AluSx SINE Alu 0 307 121 288 0 0 0 chr6 130547521 130547553 -51867689 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2417 40 0 33 chr6 130547558 130547860 -51867382 - AluY SINE Alu -19 292 1 1992 98 0 52 chr6 130547860 130547986 -51867256 - AluSx SINE Alu -190 117 12 468 233 92 137 chr6 130547993 130548307 -51866935 - L2 LINE L2 -48 3265 2966 353 290 55 19 chr6 130549237 130549354 -51865888 - MER5A DNA MER1_type -48 130 14 341 23 0 0 chr6 130550225 130550268 -51864974 + U3 snRNA snRNA 1 43 -174 1911 87 45 42 chr6 130551771 130552059 -51863183 - AluY SINE Alu -22 289 1 499 192 111 0 chr6 130552456 130552555 -51862687 + FLAM_A SINE Alu 25 134 -8 2247 110 3 0 chr6 130552622 130552914 -51862328 + AluSp SINE Alu 1 293 -20 2228 79 4 0 chr6 130556370 130556649 -51858593 - AluSg SINE Alu -30 280 1 1422 128 128 12 chr6 130556892 130557141 -51858101 + AluSg1 SINE Alu 21 298 -11 2487 44 0 10 chr6 130557572 130557868 -51857374 + AluY SINE Alu 2 294 -17 219 362 106 0 chr6 130558471 130558565 -51856677 - L2 LINE L2 -15 3257 3154 2299 94 3 0 chr6 130558579 130558876 -51856366 - AluSp SINE Alu -11 302 5 2183 132 0 3 chr6 130559061 130559372 -51855870 + AluSx SINE Alu 1 310 -2 1297 167 10 68 chr6 130560231 130560542 -51854700 - AluJo SINE Alu -9 303 11 31 0 0 0 chr6 130560552 130560583 -51854659 + AT_rich Low_complexity Low_complexity 1 31 0 965 147 0 0 chr6 130560586 130560729 -51854513 - U4 snRNA snRNA -1 144 2 31 26 0 0 chr6 130561446 130561484 -51853758 + AT_rich Low_complexity Low_complexity 1 38 0 2421 74 0 6 chr6 130561590 130561902 -51853340 - AluY SINE Alu -1 310 1 2104 110 3 7 chr6 130562287 130562409 -51852833 + AluSc SINE Alu 1 122 -187 216 0 0 0 chr6 130562409 130562433 -51852809 + (CA)n Simple_repeat Simple_repeat 2 25 0 2104 110 3 7 chr6 130562433 130562609 -51852633 + AluSc SINE Alu 122 298 -11 2384 67 3 7 chr6 130563216 130563515 -51851727 + AluY SINE Alu 1 298 -13 288 77 0 0 chr6 130563515 130563554 -51851688 + (TA)n Simple_repeat Simple_repeat 1 39 0 389 289 132 0 chr6 130564321 130564480 -51850762 + MIR SINE MIR 71 250 -12 1268 181 120 4 chr6 130564767 130564915 -51850327 - AluJo SINE Alu -15 297 168 222 62 0 0 chr6 130564915 130564947 -51850295 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1268 181 120 4 chr6 130564947 130565064 -51850178 - AluJo SINE Alu -144 168 1 838 176 59 26 chr6 130565221 130565374 -51849868 - FAM SINE Alu -17 158 1 905 79 28 11 chr6 130565472 130565649 -51849593 + (TA)n Simple_repeat Simple_repeat 1 180 0 307 244 33 22 chr6 130565668 130565758 -51849484 + L1MC4 LINE L1 6612 6702 -1340 2459 84 0 0 chr6 130565766 130566076 -51849166 - AluY SINE Alu -1 310 1 376 382 93 13 chr6 130566217 130566518 -51848724 + L2 LINE L2 2896 3220 -52 286 203 215 0 chr6 130566735 130566814 -51848428 - MIR SINE MIR -79 183 88 1602 107 93 7 chr6 130567212 130567482 -51847760 - AluSc SINE Alu -5 304 12 2315 84 10 3 chr6 130567595 130567894 -51847348 + AluSq SINE Alu 4 304 -9 252 0 0 0 chr6 130567894 130567922 -51847320 + (TA)n Simple_repeat Simple_repeat 2 29 0 752 149 0 37 chr6 130567936 130568070 -51847172 + FLAM_C SINE Alu 14 142 -1 228 244 67 50 chr6 130568098 130568217 -51847025 - L1ME LINE L1 -296 5825 5705 2270 106 3 0 chr6 130568491 130568794 -51846448 - AluSp SINE Alu -9 304 1 297 0 0 0 chr6 130568942 130568980 -51846262 + (CA)n Simple_repeat Simple_repeat 1 71 0 297 0 0 0 chr6 130568980 130569013 -51846229 + (CA)n Simple_repeat Simple_repeat 2 34 0 1611 201 4 4 chr6 130569028 130569307 -51845935 - AluJb SINE Alu -21 291 13 1926 142 7 0 chr6 130569700 130570025 -51845217 - AluSx SINE Alu 0 327 1 2222 129 0 3 chr6 130570034 130570345 -51844897 - AluSx SINE Alu -2 310 1 2337 97 3 0 chr6 130570345 130570644 -51844598 - AluSp SINE Alu -13 300 1 1016 174 23 46 chr6 130570675 130570893 -51844349 + AluJo SINE Alu 95 307 -5 294 241 113 0 chr6 130570907 130571048 -51844194 - L1ME LINE L1 -336 5785 5629 21 71 0 0 chr6 130571140 130571182 -51844060 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 130572228 130572249 -51842993 + AT_rich Low_complexity Low_complexity 1 21 0 1528 204 4 0 chr6 130572450 130572710 -51842532 + AluJo SINE Alu 3 263 -49 240 268 78 20 chr6 130572766 130572919 -51842323 - L1MC5 LINE L1 -297 7664 7503 249 56 0 0 chr6 130573117 130573153 -51842089 + AluJo SINE Alu 257 292 -9 2314 98 0 3 chr6 130573327 130573632 -51841610 - AluSg SINE Alu -6 304 1 44 0 0 0 chr6 130574575 130574619 -51840623 + AT_rich Low_complexity Low_complexity 1 44 0 510 152 181 0 chr6 130574619 130574724 -51840518 - FLAM_C SINE Alu -17 126 3 332 357 66 63 chr6 130575255 130575465 -51839777 + L2 LINE L2 2907 3120 -152 2091 127 0 31 chr6 130575465 130575787 -51839455 - AluSx SINE Alu 0 312 1 332 357 66 63 chr6 130575787 130575923 -51839319 + L2 LINE L2 3120 3254 -18 949 158 99 0 chr6 130576330 130576552 -51838690 - L1MCa LINE L1 -4025 2401 2158 1752 173 0 46 chr6 130576554 130576877 -51838365 + AluJo SINE Alu 1 308 -4 1464 208 54 17 chr6 130576943 130577241 -51838001 + AluJo SINE Alu 1 309 -3 416 154 86 26 chr6 130577272 130577389 -51837853 - L1MC4 LINE L1 -1 8041 7918 651 206 25 25 chr6 130577538 130577698 -51837544 - L1MD3 LINE L1 -432 7563 7404 374 241 0 11 chr6 130577699 130577786 -51837456 - MLT1F1 LTR MaLR -442 125 40 2307 221 88 56 chr6 130577786 130577900 -51837342 - L1MC3 LINE L1 -684 7101 6992 1814 150 56 0 chr6 130577900 130578187 -51837055 + AluSx SINE Alu 1 303 -9 2307 221 88 56 chr6 130578187 130578554 -51836688 - L1MC3 LINE L1 -793 6992 6638 195 42 0 0 chr6 130578554 130578578 -51836664 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 2307 221 88 56 chr6 130578578 130578867 -51836375 - L1MC3 LINE L1 -1147 6638 6295 1976 127 3 11 chr6 130578867 130579187 -51836055 - AluSx SINE Alu 0 318 1 2307 221 88 56 chr6 130579187 130579299 -51835943 - L1MC3 LINE L1 -1490 6295 6188 884 200 22 0 chr6 130579296 130579481 -51835761 - L1MC4 LINE L1 -1039 7003 6815 * 1560 159 10 51 chr6 130579868 130580015 -51835227 + AluJb SINE Alu 1 152 -164 2208 106 0 3 chr6 130580015 130580307 -51834935 + AluY SINE Alu 1 291 -20 1560 159 10 51 chr6 130580307 130580487 -51834755 + AluJb SINE Alu 152 316 0 1391 165 0 35 chr6 130580620 130580874 -51834368 - AluJo SINE Alu -1 311 67 1586 99 19 0 chr6 130580874 130581086 -51834156 + AluSg/x SINE Alu 82 297 -15 38 0 0 0 chr6 130581086 130581124 -51834118 + AT_rich Low_complexity Low_complexity 1 38 0 1946 143 3 16 chr6 130581319 130581633 -51833609 - AluJb SINE Alu 0 312 3 24 0 0 0 chr6 130581836 130581860 -51833382 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr6 130582081 130582122 -51833120 + AT_rich Low_complexity Low_complexity 1 41 0 307 190 0 0 chr6 130582313 130582371 -51832871 + MER46A DNA MER2_type 1 58 -178 2328 89 3 3 chr6 130582372 130582676 -51832566 - AluSg SINE Alu -6 304 1 2274 97 0 7 chr6 130582949 130583247 -51831995 + AluSg SINE Alu 1 296 -14 924 161 86 0 chr6 130583410 130583584 -51831658 + MER46A DNA MER2_type 48 236 0 2050 127 0 0 chr6 130583753 130584072 -51831170 + AluSx SINE Alu 1 319 0 2195 132 3 0 chr6 130584819 130585129 -51830113 + AluSx SINE Alu 1 311 -1 2310 89 0 3 chr6 130585334 130585636 -51829606 - AluY SINE Alu -10 301 1 24 0 0 0 chr6 130585759 130585783 -51829459 + AT_rich Low_complexity Low_complexity 1 24 0 2157 102 20 0 chr6 130585845 130586150 -51829092 - AluSx SINE Alu -1 311 1 203 315 62 88 chr6 130586604 130586918 -51828324 + L2 LINE L2 1618 1922 -1392 1779 178 3 0 chr6 130586918 130587216 -51828026 + AluSx SINE Alu 14 312 0 203 315 62 88 chr6 130587216 130587288 -51827954 + L2 LINE L2 1922 1994 -1320 250 305 42 0 chr6 130587297 130587392 -51827850 + L2 LINE L2 2289 2387 -927 2011 152 7 7 chr6 130588862 130589171 -51826071 - AluSx SINE Alu -1 311 3 21 71 0 0 chr6 130589533 130589575 -51825667 + AT_rich Low_complexity Low_complexity 1 42 0 206 189 11 137 chr6 130589908 130590003 -51825239 - MIR SINE MIR -10 252 170 1754 82 16 4 chr6 130590100 130590344 -51824898 - L1PA7 LINE L1 -3 6151 5905 254 96 0 19 chr6 130590483 130590535 -51824707 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1871 132 0 31 chr6 130590538 130590825 -51824417 - AluSx SINE Alu -34 278 1 725 194 8 0 chr6 130592433 130592562 -51822680 - FLAM_A SINE Alu -3 130 1 2064 135 0 0 chr6 130592698 130593007 -51822235 - AluSx SINE Alu 0 309 1 2419 70 0 3 chr6 130593011 130593313 -51821929 - AluSc SINE Alu -7 302 2 23 33 0 0 chr6 130597754 130597784 -51817458 + AT_rich Low_complexity Low_complexity 1 30 0 857 158 0 0 chr6 130597795 130597922 -51817320 + FLAM_C SINE Alu 2 128 -5 23 0 0 0 chr6 130598607 130598630 -51816612 + AT_rich Low_complexity Low_complexity 1 23 0 1992 98 0 52 chr6 130599513 130599691 -51815551 - AluSx SINE Alu 0 307 121 288 0 0 0 chr6 130599691 130599723 -51815519 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2417 40 0 33 chr6 130599728 130600030 -51815212 - AluY SINE Alu -19 292 1 1992 98 0 52 chr6 130600030 130600156 -51815086 - AluSx SINE Alu -190 117 12 468 233 92 137 chr6 130600163 130600477 -51814765 - L2 LINE L2 -48 3265 2966 353 290 55 19 chr6 130601407 130601524 -51813718 - MER5A DNA MER1_type -48 130 14 341 23 0 0 chr6 130602395 130602438 -51812804 + U3 snRNA snRNA 1 43 -174 2171 81 25 3 chr6 130603941 130604225 -51811017 - AluSx SINE Alu -22 290 1 473 244 0 0 chr6 130604275 130604394 -51810848 - L1ME LINE L1 -375 5795 5677 * 1566 227 82 102 chr6 130604391 130604432 -51810810 - L1ME LINE L1 -832 5314 5274 2215 122 0 0 chr6 130604432 130604727 -51810515 - AluSx SINE Alu -17 295 1 1566 227 82 102 chr6 130604727 130605905 -51809337 - L1ME LINE L1 -872 5274 4119 409 121 0 0 chr6 130605905 130605963 -51809279 + AluS SINE Alu 1 58 -251 1277 108 5 78 chr6 130606063 130606267 -51808975 + AluSg/x SINE Alu 99 287 -23 216 0 0 0 chr6 130606277 130606301 -51808941 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 426 244 119 19 chr6 130606470 130606630 -51808612 - MER102b DNA MER1_type -20 321 146 225 241 0 0 chr6 130606692 130606746 -51808496 + MER53 DNA DNA 1 54 -135 2364 90 0 3 chr6 130606825 130607125 -51808117 + AluSc SINE Alu 1 299 -10 599 180 0 9 chr6 130608148 130608259 -51806983 - Tigger7 DNA MER2_type -8 2483 2374 870 227 76 29 chr6 130608267 130608610 -51806632 - L1MC4 LINE L1 -473 7569 7211 1843 136 52 0 chr6 130608610 130608896 -51806346 - AluSx SINE Alu -11 301 1 739 119 0 51 chr6 130608948 130609066 -51806176 + AluSq/x SINE Alu 5 116 -196 710 36 0 0 chr6 130609066 130609150 -51806092 + AluY SINE Alu 215 298 -13 1277 124 0 83 chr6 130609150 130609367 -51805875 + AluSx SINE Alu 102 300 -10 2394 59 3 3 chr6 130609425 130609713 -51805529 + AluSp SINE Alu 10 297 -16 324 299 15 104 chr6 130609713 130609914 -51805328 + MER102b DNA MER1_type 159 341 0 23 68 0 0 chr6 130610231 130610275 -51804967 + AT_rich Low_complexity Low_complexity 1 44 0 180 354 34 41 chr6 130610369 130610516 -51804726 - L2 LINE L2 -2836 478 333 457 279 127 12 chr6 130610964 130611129 -51804113 - MER5A DNA MER1_type 0 189 6 22 25 0 25 chr6 130611330 130611351 -51803891 + AT_rich Low_complexity Low_complexity 1 22 -17 1977 146 0 7 chr6 130611351 130611638 -51803604 - AluSx SINE Alu -27 285 1 22 25 0 25 chr6 130611638 130611656 -51803586 + AT_rich Low_complexity Low_complexity 22 39 0 368 236 138 98 chr6 130612200 130612254 -51802988 + MIR SINE MIR 4 54 -208 2288 101 0 0 chr6 130612254 130612550 -51802692 - AluSg SINE Alu -14 296 1 368 236 138 98 chr6 130612550 130612707 -51802535 + MIR SINE MIR 54 227 -35 4722 106 25 63 chr6 130612707 130613517 -51801725 + MER4E LTR ERV1 1 779 0 368 236 138 98 chr6 130613517 130613529 -51801713 + MIR SINE MIR 227 237 -25 649 165 0 10 chr6 130613687 130613937 -51801305 - AluJb SINE Alu -18 294 11 2197 101 24 3 chr6 130615097 130615393 -51799849 + AluSg SINE Alu 1 302 -8 2132 132 24 0 chr6 130615875 130616171 -51799071 - AluSx SINE Alu -9 303 1 261 288 119 8 chr6 130616173 130616291 -51798951 - L2 LINE L2 -12 3301 3171 2108 112 7 0 chr6 130616323 130616618 -51798624 - AluSg SINE Alu -13 297 1 2338 86 10 0 chr6 130616627 130616930 -51798312 - AluSq SINE Alu -7 306 1 2249 103 0 0 chr6 130616930 130617222 -51798020 - AluSx SINE Alu -20 292 1 23 0 0 0 chr6 130617644 130617667 -51797575 + AT_rich Low_complexity Low_complexity 1 23 0 2229 119 3 0 chr6 130617780 130618091 -51797151 - AluSx SINE Alu 0 312 1 1613 154 0 0 chr6 130618500 130618746 -51796496 - AluSx SINE Alu -14 298 53 270 224 118 0 chr6 130618746 130618822 -51796420 + L2 LINE L2 3217 3301 -12 29 0 0 0 chr6 130618923 130618952 -51796290 + AT_rich Low_complexity Low_complexity 1 29 0 894 184 20 0 chr6 130618968 130619115 -51796127 - FRAM SINE Alu -30 146 1 1820 182 3 6 chr6 130619360 130619732 -51795510 - AluJo SINE Alu 0 371 1 27 62 0 0 chr6 130619947 130619995 -51795247 + AT_rich Low_complexity Low_complexity 1 48 0 2037 161 0 0 chr6 130620182 130620487 -51794755 - AluSx SINE Alu -7 305 1 286 196 72 21 chr6 130620674 130620771 -51794471 + L1MC4 LINE L1 5407 5508 -2300 797 258 40 74 chr6 130620783 130621163 -51794079 + L1MC4 LINE L1 5577 5943 -1865 2234 89 4 0 chr6 130621291 130621571 -51793671 + AluSq SINE Alu 1 281 -32 1901 178 0 9 chr6 130621772 130622087 -51793155 + AluJo SINE Alu 1 312 0 1669 171 21 4 chr6 130623901 130624182 -51791060 + AluJb SINE Alu 1 286 -26 2282 71 9 52 chr6 130625537 130625863 -51789379 - AluSx SINE Alu 0 312 1 1086 157 0 12 chr6 130626689 130626861 -51788381 - AluSg/x SINE Alu -15 297 128 484 165 48 10 chr6 130627048 130627151 -51788091 - AluSq/x SINE Alu -205 107 1 189 250 0 0 chr6 130627315 130627359 -51787883 + L2 LINE L2 3208 3251 -62 685 247 37 0 chr6 130627363 130627525 -51787717 - MER45A DNA AcHobo -5 173 6 21 0 0 0 chr6 130627910 130627931 -51787311 + AT_rich Low_complexity Low_complexity 1 21 0 485 316 119 14 chr6 130628577 130628795 -51786447 + MIR SINE MIR 6 246 -16 180 111 0 0 chr6 130628911 130628938 -51786304 + (TA)n Simple_repeat Simple_repeat 1 27 0 338 272 0 22 chr6 130628938 130629030 -51786212 - L1MC4 LINE L1 -1339 6703 6614 * 353 289 0 0 chr6 130628950 130629040 -51786202 + L1MC4 LINE L1 6614 6703 -1339 322 279 7 20 chr6 130629156 130629186 -51786056 - L1ME4a LINE L1 -199 5922 5893 1008 178 6 18 chr6 130629186 130629355 -51785887 - FAM SINE Alu -8 167 1 322 279 7 20 chr6 130629355 130629471 -51785771 - L1ME4a LINE L1 -228 5893 5778 2028 115 63 0 chr6 130629588 130629874 -51785368 - AluSg SINE Alu -6 304 1 25 31 0 0 chr6 130630610 130630642 -51784600 + AT_rich Low_complexity Low_complexity 1 32 0 1748 170 3 7 chr6 130630838 130631132 -51784110 - AluJb SINE Alu -18 294 2 235 273 143 0 chr6 130631715 130631792 -51783450 - MIR3 SINE MIR -1 207 120 2071 121 13 7 chr6 130631795 130632102 -51783140 - AluY SINE Alu -2 309 1 1141 104 46 20 chr6 130632133 130632450 -51782792 + THE1C LTR MaLR 1 375 0 2191 93 0 4 chr6 130632972 130633252 -51781990 + AluSx SINE Alu 1 279 -33 396 0 0 0 chr6 130633252 130633296 -51781946 + (CA)n Simple_repeat Simple_repeat 1 44 0 2255 113 0 3 chr6 130634030 130634332 -51780910 - AluSx SINE Alu -11 301 1 228 297 144 25 chr6 130634366 130634484 -51780758 + MIR3 SINE MIR 15 146 -62 219 36 0 0 chr6 130634484 130634512 -51780730 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1813 135 0 48 chr6 130635513 130635826 -51779416 - AluSx SINE Alu 0 307 9 1874 156 10 0 chr6 130636047 130636342 -51778900 + AluJb SINE Alu 1 298 -14 2232 123 0 0 chr6 130636968 130637269 -51777973 - AluSq SINE Alu -12 301 1 361 242 8 94 chr6 130637275 130637403 -51777839 + MIR SINE MIR 75 191 -71 972 213 98 9 chr6 130637612 130637837 -51777405 + AluJo SINE Alu 24 268 -44 531 247 34 22 chr6 130637891 130638069 -51777173 - MER104 DNA MER2_type 0 180 1 1949 164 3 0 chr6 130638257 130638562 -51776680 - AluJb SINE Alu -6 306 1 211 337 157 11 chr6 130639230 130639408 -51775834 + MIR SINE MIR 58 261 -1 2107 176 2 30 chr6 130640571 130640974 -51774268 - MLT2D LTR ERVL -13 401 10 1037 173 0 6 chr6 130641040 130641213 -51774029 - AluJb SINE Alu -9 303 132 190 236 132 47 chr6 130641591 130641697 -51773545 - MIR SINE MIR -63 145 31 2101 143 0 0 chr6 130643732 130644025 -51771217 + AluSq SINE Alu 2 294 -19 492 279 60 40 chr6 130644696 130644902 -51770340 - MIR SINE MIR -5 257 44 1857 169 0 10 chr6 130645083 130645397 -51769845 + AluJb SINE Alu 1 311 -1 262 222 0 19 chr6 130645574 130645628 -51769614 - L2 LINE L2 -4 3268 3216 183 184 0 0 chr6 130647692 130647730 -51767512 + (TA)n Simple_repeat Simple_repeat 1 38 0 2334 93 0 10 chr6 130648452 130648762 -51766480 + AluSg1 SINE Alu 1 307 -2 204 40 0 0 chr6 130650227 130650252 -51764990 + (T)n Simple_repeat Simple_repeat 1 25 0 1868 194 0 0 chr6 130650444 130650754 -51764488 + AluSx SINE Alu 3 312 0 2045 105 0 3 chr6 130651924 130652209 -51763033 + AluSx SINE Alu 24 307 -5 222 37 0 0 chr6 130652288 130652315 -51762927 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 1776 112 68 4 chr6 130653299 130653577 -51761665 - AluSc SINE Alu -13 296 1 1198 220 4 4 chr6 130653730 130653971 -51761271 - ERVL LTR ERVL -1386 4378 4138 3461 269 59 14 chr6 130654036 130655086 -51760156 - ERVL LTR ERVL -2024 3740 2644 824 274 115 13 chr6 130655127 130655441 -51759801 - MLT2F LTR ERVL -301 362 17 375 154 0 0 chr6 130655697 130655762 -51759480 + A-rich Low_complexity Low_complexity 5 69 0 678 211 0 0 chr6 130656021 130656144 -51759098 + AluJb SINE Alu 9 131 -181 1303 184 41 68 chr6 130656212 130656505 -51758737 + AluJo SINE Alu 5 289 -23 1894 169 10 0 chr6 130656643 130656944 -51758298 + AluJo SINE Alu 1 304 -8 39 50 0 0 chr6 130656979 130657039 -51758203 + AT_rich Low_complexity Low_complexity 1 60 0 1906 152 3 29 chr6 130657594 130657903 -51757339 + AluSx SINE Alu 1 301 -11 29 0 0 0 chr6 130658052 130658081 -51757161 + AT_rich Low_complexity Low_complexity 1 29 0 1513 163 29 56 chr6 130659665 130659971 -51755271 + AluJb SINE Alu 1 298 -14 192 182 23 23 chr6 130760214 130760258 -51654984 + MIR SINE MIR 219 262 0 211 329 98 0 chr6 130760274 130760356 -51654886 - L2 LINE L2 -36 3236 3147 476 337 52 95 chr6 130760367 130760883 -51654359 + L3 LINE CR1 832 1325 -252 26 0 0 0 chr6 130761011 130761037 -51654205 + AT_rich Low_complexity Low_complexity 1 26 0 387 324 92 0 chr6 130761118 130761291 -51653951 - L2 LINE L2 -5 3308 3120 342 263 123 45 chr6 130761429 130761608 -51653634 + MIR SINE MIR 21 213 -49 801 330 77 21 chr6 130761660 130762127 -51653115 + LTR33 LTR ERVL 29 521 0 258 337 0 10 chr6 130762792 130762890 -51652352 + ERVL LTR ERVL 835 931 -4833 619 314 29 54 chr6 130763513 130763828 -51651414 + ERVL LTR ERVL 1492 1798 -3966 374 311 79 18 chr6 130763863 130764027 -51651215 + ERVL LTR ERVL 2425 2598 -3166 349 232 112 90 chr6 130764255 130764474 -51650768 + MLT1J1 LTR MaLR 281 444 -2 606 311 100 37 chr6 130764588 130765019 -51650223 + L1MC4a LINE L1 5437 5894 -1914 216 67 0 0 chr6 130765065 130765095 -51650147 + (CA)n Simple_repeat Simple_repeat 1 30 0 748 216 21 53 chr6 130766351 130766541 -51648701 + MER5A DNA MER1_type 2 185 -4 353 322 54 21 chr6 130767048 130767290 -51647952 - L1ME LINE L1 -502 5664 5415 246 344 70 13 chr6 130767342 130767499 -51647743 - MIR SINE MIR -15 247 82 23 0 0 0 chr6 130767845 130767868 -51647374 + AT_rich Low_complexity Low_complexity 1 23 0 382 279 0 18 chr6 130767933 130768044 -51647198 - MIR SINE MIR -2 260 152 260 163 0 0 chr6 130768044 130768093 -51647149 + MER50 LTR ERV1 1 49 -685 864 80 0 0 chr6 130768179 130768291 -51646951 - AluSg/x SINE Alu -12 298 187 707 194 0 0 chr6 130768294 130768418 -51646824 + AluJo/FRAM SINE Alu 171 294 -18 25 0 0 0 chr6 130768434 130768459 -51646783 + AT_rich Low_complexity Low_complexity 1 25 0 6210 161 17 13 chr6 130768494 130768535 -51646707 + L1MA4 LINE L1 4135 4174 -2126 1665 140 75 7 chr6 130768535 130768827 -51646415 + AluSx SINE Alu 1 312 0 6210 161 17 13 chr6 130768827 130770600 -51644642 + L1MA4 LINE L1 4174 5958 -342 368 176 55 0 chr6 130770628 130770719 -51644523 + L1MB3 LINE L1 6087 6182 -1 22 0 0 0 chr6 130771563 130771585 -51643657 + AT_rich Low_complexity Low_complexity 1 22 0 1355 322 70 27 chr6 130771843 130772470 -51642772 + L1MA6 LINE L1 4 657 -6132 4143 206 19 53 chr6 130772825 130773871 -51641371 + L1MA6 LINE L1 1322 2331 -4458 * 11115 184 56 8 chr6 130773863 130774927 -51640315 + L1MA6 LINE L1 3266 4277 -2665 6383 50 10 0 chr6 130774927 130775728 -51639514 + L1PA5 LINE L1 5343 6151 -3 11115 184 56 8 chr6 130775728 130777682 -51637560 + L1MA6 LINE L1 4277 6135 -807 198 0 0 0 chr6 130777682 130777704 -51637538 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 345 24 0 0 chr6 130777703 130777745 -51637497 + (GA)n Simple_repeat Simple_repeat 2 43 0 11115 184 56 8 chr6 130777704 130778227 -51637015 + L1MA6 LINE L1 6135 6942 0 438 53 0 0 chr6 130778569 130778626 -51636616 + (CA)n Simple_repeat Simple_repeat 1 57 0 207 354 54 36 chr6 130778943 130779166 -51636076 + L2 LINE L2 2622 2848 -466 189 292 0 0 chr6 130779175 130779223 -51636019 + L2 LINE L2 2712 2759 -555 264 255 51 61 chr6 130779584 130779682 -51635560 + L2 LINE L2 3174 3270 -2 188 229 21 21 chr6 130780612 130780660 -51634582 + L2 LINE L2 3262 3309 -4 1963 266 42 17 chr6 130780754 130780961 -51634281 + MLT1F LTR MaLR 1 201 -341 1579 253 49 26 chr6 130780961 130781468 -51633774 - LTR40a LTR ERVL 0 519 1 1963 266 42 17 chr6 130781468 130781789 -51633453 + MLT1F LTR MaLR 201 542 0 258 302 27 27 chr6 130781790 130781939 -51633303 + MLT1F-int LTR MaLR 2 150 -1221 471 324 31 5 chr6 130781970 130782192 -51633050 + MLT1F-int LTR MaLR 285 512 -859 261 325 100 25 chr6 130783449 130783569 -51631673 + MIR SINE MIR 16 144 -64 7183 129 18 0 chr6 130783573 130784684 -51630558 - Tigger1 DNA MER2_type 0 2418 1288 4410 160 62 7 chr6 130784686 130785162 -51630080 - Tigger1 DNA MER2_type -1567 851 312 189 0 0 0 chr6 130785162 130785183 -51630059 + (GA)n Simple_repeat Simple_repeat 2 22 0 4410 160 62 7 chr6 130785183 130785512 -51629730 - Tigger1 DNA MER2_type -2106 312 2 201 74 0 0 chr6 130786399 130786426 -51628816 + (TG)n Simple_repeat Simple_repeat 1 27 0 227 161 18 0 chr6 130787080 130787136 -51628106 + (TA)n Simple_repeat Simple_repeat 1 57 0 442 319 52 7 chr6 130787749 130787884 -51627358 - MIR3 SINE MIR -38 170 30 4710 40 43 0 chr6 130788178 130788761 -51626481 + LTR14B LTR ERVK 1 608 0 29 0 0 0 chr6 130789141 130789170 -51626072 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 130790786 130790814 -51624428 + AT_rich Low_complexity Low_complexity 1 28 0 206 281 317 0 chr6 130790909 130790991 -51624251 - L2 LINE L2 0 3313 3206 339 323 52 13 chr6 130791107 130791262 -51623980 + HAL1b LINE L1 1187 1347 -1 302 331 18 49 chr6 130791516 130791679 -51623563 - MIR SINE MIR -65 197 40 194 407 58 39 chr6 130792381 130792740 -51622502 + L2 LINE L2 2809 3174 -98 238 266 73 97 chr6 130793632 130793880 -51621362 - LTR33 LTR ERVL -1 520 279 1367 199 0 65 chr6 130794175 130794496 -51620746 - AluJo SINE Alu -12 300 1 294 305 21 59 chr6 130794563 130794750 -51620492 - HERVL LTR ERVL -326 5328 5149 22 35 0 0 chr6 130795642 130795671 -51619571 + GC_rich Low_complexity Low_complexity 1 29 0 1663 158 0 26 chr6 130795800 130796073 -51619169 - AluSx SINE Alu -46 266 1 353 241 80 58 chr6 130798934 130799071 -51616171 - MIR SINE MIR -56 206 67 351 273 115 22 chr6 130799553 130799692 -51615550 - MIR SINE MIR -3 259 108 400 353 98 5 chr6 130800285 130800509 -51614733 + MIR SINE MIR 12 256 -6 21 0 0 0 chr6 130804115 130804136 -51611106 + AT_rich Low_complexity Low_complexity 1 21 0 294 292 109 16 chr6 130804568 130804760 -51610482 + L1M4 LINE L1 4767 4976 -1170 1494 204 30 9 chr6 130804868 130805201 -51610041 - Charlie1b DNA MER1_type -176 347 8 27 0 0 0 chr6 130806147 130806174 -51609068 + AT_rich Low_complexity Low_complexity 1 27 0 192 234 0 0 chr6 130806772 130806819 -51608423 + CT-rich Low_complexity Low_complexity 6 52 0 5450 207 20 28 chr6 130806873 130806957 -51608285 + Cheshire DNA MER1_type 10 93 -2327 2179 107 10 0 chr6 130806957 130807248 -51607994 - AluSg SINE Alu -16 294 1 5450 207 20 28 chr6 130807248 130808388 -51606854 + Cheshire DNA MER1_type 93 1225 -1195 2955 179 44 123 chr6 130808378 130809351 -51605891 + Cheshire DNA MER1_type 1486 2377 -43 * 2323 89 13 0 chr6 130809351 130809654 -51605588 - AluY SINE Alu -4 307 1 2955 179 44 123 chr6 130809654 130809695 -51605547 + Cheshire DNA MER1_type 2377 2420 0 2459 101 28 6 chr6 130810854 130811210 -51604032 + THE1B LTR MaLR 1 364 0 10603 107 33 0 chr6 130811210 130812739 -51602503 + THE1B-int LTR MaLR 1 1580 0 2466 124 17 0 chr6 130812742 130813097 -51602145 + THE1B LTR MaLR 4 364 0 225 232 0 0 chr6 130813699 130813768 -51601474 + (TGAA)n Simple_repeat Simple_repeat 1 69 0 24 0 0 0 chr6 130814756 130814780 -51600462 + AT_rich Low_complexity Low_complexity 1 24 0 2485 62 0 10 chr6 130815275 130815581 -51599661 - AluY SINE Alu -8 303 1 516 283 61 53 chr6 130817224 130817584 -51597658 - MER34B LTR ERV1 0 565 203 180 300 117 42 chr6 130817711 130817831 -51597411 + L2 LINE L2 3140 3268 -4 214 343 14 0 chr6 130818164 130818237 -51597005 + MIR SINE MIR 150 223 -39 567 186 5 147 chr6 130818760 130818964 -51596278 + L1MD3 LINE L1 7322 7496 -499 344 207 103 0 chr6 130818959 130819046 -51596196 + L1MC3 LINE L1 7357 7452 -333 * 396 0 0 0 chr6 130819048 130819092 -51596150 + (CA)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chr6 130819101 130819122 -51596120 + (GA)n Simple_repeat Simple_repeat 2 22 0 25852 107 7 6 chr6 130819141 130819771 -51595471 + L1P LINE L1 1228 1856 -4290 2346 106 0 0 chr6 130819771 130820074 -51595168 + AluSg SINE Alu 3 305 -5 25852 107 7 6 chr6 130820074 130823351 -51591891 + L1P LINE L1 1856 5139 -1007 29 47 0 0 chr6 130823353 130823396 -51591846 + AT_rich Low_complexity Low_complexity 1 43 0 339 184 23 0 chr6 130823493 130823580 -51591662 + L1ME4a LINE L1 5977 6065 -56 2238 103 0 17 chr6 130824285 130824586 -51590656 + AluSx SINE Alu 1 296 -16 1710 176 7 14 chr6 130824601 130824891 -51590351 + AluJo SINE Alu 6 293 -19 25 0 0 0 chr6 130824891 130824916 -51590326 + AT_rich Low_complexity Low_complexity 1 25 0 885 174 97 0 chr6 130825417 130825613 -51589629 + MER33 DNA MER1_type 5 219 -105 218 292 0 15 chr6 130826152 130826217 -51589025 + GA-rich Low_complexity Low_complexity 1 64 0 3337 128 31 10 chr6 130826262 130826778 -51588464 - MER1A DNA MER1_type 0 527 1 23 0 0 0 chr6 130827573 130827596 -51587646 + AT_rich Low_complexity Low_complexity 1 23 0 464 133 8 125 chr6 130827613 130827741 -51587501 + MER33 DNA MER1_type 212 324 0 512 232 26 45 chr6 130828397 130828552 -51586690 - L2 LINE L2 0 3313 3162 27 29 0 0 chr6 130829619 130829653 -51585589 + AT_rich Low_complexity Low_complexity 1 34 0 2016 197 27 15 chr6 130830111 130830523 -51584719 + MER74A LTR ERVL 128 544 -14 361 238 98 14 chr6 130830645 130830788 -51584454 + L1MCa LINE L1 1345 1499 -4927 1689 171 13 25 chr6 130831056 130831371 -51583871 + AluJo SINE Alu 1 311 -1 327 167 0 0 chr6 130831934 130832000 -51583242 + T-rich Low_complexity Low_complexity 1 66 0 195 42 0 0 chr6 130832043 130832067 -51583175 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 34 0 0 0 chr6 130832618 130832652 -51582590 + AT_rich Low_complexity Low_complexity 1 34 0 216 0 0 0 chr6 130832865 130832889 -51582353 + (A)n Simple_repeat Simple_repeat 1 24 0 31 0 0 0 chr6 130833482 130833513 -51581729 + AT_rich Low_complexity Low_complexity 1 31 0 1806 184 3 0 chr6 130833565 130833875 -51581367 + AluJo SINE Alu 1 311 -1 206 362 41 53 chr6 130834078 130834396 -51580846 - L2 LINE L2 -957 2357 2044 243 257 0 29 chr6 130835086 130835156 -51580086 + Charlie8 DNA MER1_type 2344 2411 -6 1583 163 10 17 chr6 130836690 130836979 -51578263 - AluJb SINE Alu 0 312 26 26 30 0 0 chr6 130837082 130837115 -51578127 + AT_rich Low_complexity Low_complexity 1 33 0 1505 192 23 23 chr6 130837272 130837579 -51577663 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr6 130838225 130838253 -51576989 + AT_rich Low_complexity Low_complexity 1 28 0 1483 213 3 17 chr6 130839623 130839923 -51575319 - AluJo SINE Alu -16 296 1 240 179 0 0 chr6 130840259 130840298 -51574944 + Charlie5 DNA MER1_type 12 50 -2562 1280 109 14 14 chr6 130840420 130840631 -51574611 + L1MA5A LINE L1 6086 6296 -1 286 284 11 0 chr6 130840632 130840720 -51574522 + L1ME1 LINE L1 6028 6116 -50 1975 144 13 3 chr6 130840726 130841024 -51574218 + AluJb SINE Alu 5 305 -7 2192 101 7 0 chr6 130841101 130841403 -51573839 + AluSg SINE Alu 1 304 0 850 148 42 64 chr6 130841435 130841671 -51573571 + Charlie5 DNA MER1_type 2355 2585 -27 193 353 0 0 chr6 130841851 130841919 -51573323 - L2 LINE L2 -8 3264 3197 362 354 36 31 chr6 130841922 130842145 -51573097 - L2 LINE L2 -399 2915 2692 429 242 81 12 chr6 130842615 130842776 -51572466 + L1ME4a LINE L1 5929 6100 -21 1203 318 95 29 chr6 130843026 130843900 -51571342 + L2 LINE L2 2149 3081 -232 681 289 68 17 chr6 130844441 130844534 -51570708 - MIR SINE MIR -14 248 161 2042 157 8 45 chr6 130844534 130844827 -51570415 + MER47A DNA MER2_type 1 278 -2045 2236 102 10 0 chr6 130844827 130845122 -51570120 - AluSx SINE Alu -14 298 1 2042 157 8 45 chr6 130845122 130845205 -51570037 + MER47A DNA MER2_type 278 363 -3 681 289 68 17 chr6 130845205 130845346 -51569896 - MIR SINE MIR -101 161 2 861 232 91 75 chr6 130846573 130846879 -51568363 - MLT1D LTR MaLR 0 505 190 2083 137 7 0 chr6 130846879 130847171 -51568071 - AluSx SINE Alu -18 294 1 861 232 91 75 chr6 130847171 130847248 -51567994 - MLT1D LTR MaLR -315 190 116 284 296 138 37 chr6 130848042 130848231 -51567011 - MLT1J LTR MaLR -261 250 43 292 339 18 18 chr6 130849559 130849671 -51565571 - L2 LINE L2 -609 2705 2594 2635 140 22 36 chr6 130849680 130850173 -51565069 - LTR29 LTR ERV1 0 622 137 242 29 29 0 chr6 130850588 130850623 -51564619 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1589 174 19 32 chr6 130851590 130851900 -51563342 + AluJo SINE Alu 1 306 -6 2811 93 0 3 chr6 130852417 130852792 -51562450 + THE1C LTR MaLR 1 374 -1 315 0 0 0 chr6 130852992 130853027 -51562215 + (A)n Simple_repeat Simple_repeat 1 35 0 28 61 0 0 chr6 130854397 130854446 -51560796 + AT_rich Low_complexity Low_complexity 1 49 0 480 18 0 0 chr6 130855288 130855345 -51559897 + (CA)n Simple_repeat Simple_repeat 2 58 0 364 329 21 14 chr6 130855736 130855876 -51559366 + MIR3 SINE MIR 6 146 -62 367 321 142 14 chr6 130856280 130856576 -51558666 + L2 LINE L2 2843 3176 -137 556 320 109 68 chr6 130856580 130857436 -51557806 + L2 LINE L2 2436 3313 0 242 269 6 154 chr6 130857440 130857596 -51557646 + L2 LINE L2 3174 3306 -7 815 313 55 13 chr6 130858084 130858452 -51556790 + LTR16A LTR ERVL 19 429 -21 274 156 22 0 chr6 130859210 130859255 -51555987 + MLT1D LTR MaLR 1 46 -459 321 293 101 0 chr6 130860354 130860453 -51554789 - MIR3 SINE MIR -48 160 52 649 134 34 8 chr6 130861759 130861875 -51553367 + MLT2C1 LTR ERVL 3 121 -276 3228 114 37 18 chr6 130861875 130862383 -51552859 + LTR8 LTR ERV1 1 518 -173 1334 112 31 10 chr6 130862419 130862615 -51552627 + LTR8 LTR ERV1 492 691 0 1032 199 57 27 chr6 130862618 130862833 -51552409 + MLT2C1 LTR ERVL 128 354 -43 182 37 37 0 chr6 130862833 130862860 -51552382 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 1032 199 57 27 chr6 130862860 130862906 -51552336 + MLT2C1 LTR ERVL 354 397 0 252 130 0 0 chr6 130863334 130863380 -51551862 + (GA)n Simple_repeat Simple_repeat 1 46 0 2778 124 76 68 chr6 130863850 130864391 -51550851 - LTR10A LTR ERV1 -64 545 1 1889 236 76 9 chr6 130864396 130864857 -51550385 - MLT1F LTR MaLR -50 492 1 2214 95 62 9 chr6 130865319 130865656 -51549586 - THE1A LTR MaLR 0 355 1 288 401 37 0 chr6 130866470 130866632 -51548610 + MIR3 SINE MIR 10 177 -31 1356 167 51 31 chr6 130867745 130868038 -51547204 + MLT1B LTR MaLR 1 299 -91 343 107 89 0 chr6 130868038 130868094 -51547148 - MLT1A2 LTR MaLR -1 389 329 1927 109 34 0 chr6 130868096 130868363 -51546879 - AluSc SINE Alu -8 301 26 652 181 83 0 chr6 130868467 130868611 -51546631 - MLT1A2 LTR MaLR -218 156 1 511 131 107 0 chr6 130868613 130868697 -51546545 + MLT1B LTR MaLR 297 389 -1 711 226 6 0 chr6 130868749 130868917 -51546325 - MER97b DNA MER1_type? -321 732 564 1385 162 9 4 chr6 130868955 130869184 -51546058 - MER46A DNA MER2_type -6 230 1 863 201 242 0 chr6 130869184 130869428 -51545814 - MER58B DNA MER1_type -35 306 4 1280 229 87 0 chr6 130869431 130869495 -51545747 - MER97a DNA MER1_type? -325 569 512 1668 148 55 10 chr6 130869495 130869785 -51545457 - AluJo SINE Alu -1 311 9 1280 229 87 0 chr6 130869785 130870065 -51545177 - MER97a DNA MER1_type? -382 512 195 367 244 6 21 chr6 130870154 130870321 -51544921 - MER97c DNA MER1_type? -885 205 4 333 0 0 0 chr6 130870824 130870861 -51544381 + (TG)n Simple_repeat Simple_repeat 1 37 0 460 175 93 10 chr6 130871548 130871645 -51543597 - MIR SINE MIR -74 188 84 246 337 116 0 chr6 130873658 130873744 -51541498 - MIR SINE MIR -76 132 37 1586 101 28 15 chr6 130875498 130875802 -51539440 + MER61A LTR ERV1 1 343 0 846 201 0 27 chr6 130876316 130876500 -51538742 - AluJb SINE Alu -7 305 127 5779 190 66 36 chr6 130876648 130878053 -51537189 - Charlie1a DNA MER1_type -1 1454 7 573 251 18 35 chr6 130878605 130878776 -51536466 - MIR SINE MIR 0 262 95 534 303 74 43 chr6 130878776 130879591 -51535651 + L1MC/D LINE L1 4494 5360 -1123 2463 80 3 0 chr6 130879591 130879902 -51535340 + AluSp SINE Alu 1 312 -1 534 303 74 43 chr6 130879902 130880280 -51534962 + L1MC/D LINE L1 5360 5725 -758 213 161 54 11 chr6 130880641 130880734 -51534508 + (TA)n Simple_repeat Simple_repeat 2 98 0 288 289 94 25 chr6 130880942 130881101 -51534141 - L2 LINE L2 -169 3103 2934 2431 125 11 19 chr6 130881537 130881914 -51533328 - THE1C LTR MaLR 0 375 2 9358 124 46 43 chr6 130881915 130883490 -51531752 - THE1C-int LTR MaLR 0 1580 1 2292 117 35 16 chr6 130883490 130883857 -51531385 - THE1C LTR MaLR 0 375 2 945 174 92 5 chr6 130884228 130884423 -51530819 - MLT1B LTR MaLR 0 390 179 1191 188 0 22 chr6 130884454 130884683 -51530559 - AluJo SINE Alu -3 309 86 687 224 0 46 chr6 130884711 130884885 -51530357 - MLT1B LTR MaLR -224 166 1 216 122 0 0 chr6 130884893 130884934 -51530308 + (T)n Simple_repeat Simple_repeat 1 41 0 1490 179 10 57 chr6 130885160 130885461 -51529781 - AluJb SINE Alu -21 291 5 180 212 0 0 chr6 130885500 130885533 -51529709 - MIR SINE MIR -64 144 112 1284 215 90 68 chr6 130885588 130886213 -51529029 - LTR8A LTR ERV1 0 727 55 4348 152 21 28 chr6 130886244 130887208 -51528034 - MER11C LTR ERVK -25 1046 1 237 68 136 23 chr6 130887217 130887261 -51527981 - LTR8 LTR ERV1 -642 49 1 2342 195 12 82 chr6 130887352 130887948 -51527294 - MLT2B3 LTR ERVL 0 554 1 199 185 0 31 chr6 130887956 130888021 -51527221 + (CAT)n Simple_repeat Simple_repeat 1 63 0 291 184 345 0 chr6 130889121 130889208 -51526034 + L2 LINE L2 3195 3311 -2 192 287 115 11 chr6 130889676 130889763 -51525479 + MIR SINE MIR 36 131 -131 2048 117 3 0 chr6 130890071 130890354 -51524888 + AluSq SINE Alu 17 300 -13 242 255 78 54 chr6 130891230 130891434 -51523808 - L1P5 LINE L1 -580 5574 5366 429 200 0 0 chr6 130891457 130891532 -51523710 + MER1B DNA MER1_type 7 81 -256 * 991 131 17 40 chr6 130891526 130891701 -51523541 + MER1B DNA MER1_type 169 339 0 200 143 24 0 chr6 130892178 130892220 -51523022 + (TA)n Simple_repeat Simple_repeat 2 44 0 425 232 119 81 chr6 130895003 130895188 -51520054 + MIR SINE MIR 28 219 -43 757 220 47 86 chr6 130895870 130895937 -51519305 - MIR SINE MIR 0 262 194 784 172 8 15 chr6 130895937 130896071 -51519171 - FLAM_C SINE Alu 0 133 1 757 220 47 86 chr6 130896071 130896258 -51518984 - MIR SINE MIR -68 194 18 418 233 0 78 chr6 130898012 130898128 -51517114 - MER69 DNA AcHobo -70 2456 1 464 285 35 14 chr6 130898301 130898445 -51516797 - MER63A DNA MER1_type 0 210 64 628 299 118 50 chr6 130898828 130899226 -51516016 - L2 LINE L2 0 3313 2889 484 349 45 65 chr6 130899212 130899464 -51515778 - L2 LINE L2 -356 2958 2718 * 1408 172 122 11 chr6 130899464 130899726 -51515516 - AluJb SINE Alu -21 291 1 484 349 45 65 chr6 130899726 130899935 -51515307 - L2 LINE L2 -596 2718 2506 1986 137 38 3 chr6 130899935 130900227 -51515015 - AluSx SINE Alu -10 302 1 1556 214 0 22 chr6 130900287 130900605 -51514637 + AluJo SINE Alu 1 311 -1 232 225 0 14 chr6 130901467 130901538 -51513704 - L1MC4 LINE L1 -1320 6722 6653 2253 99 0 0 chr6 130901578 130901860 -51513382 - AluSx SINE Alu -29 283 2 22 0 0 0 chr6 130902251 130902273 -51512969 + AT_rich Low_complexity Low_complexity 1 22 0 455 265 112 6 chr6 130902432 130902602 -51512640 + MIR SINE MIR 2 189 -73 1126 298 24 38 chr6 130903233 130903686 -51511556 + L2 LINE L2 1804 2250 -1064 1217 254 97 41 chr6 130903721 130904214 -51511028 + MLT1G1 LTR MaLR 75 595 0 1107 286 160 25 chr6 130904227 130905081 -51510161 + L2 LINE L2 2262 3229 -84 1821 233 37 31 chr6 130905536 130906046 -51509196 - LTR40a LTR ERVL 0 519 7 1226 207 47 76 chr6 130906050 130906432 -51508810 + MLT1A2 LTR MaLR 4 374 0 1602 179 26 29 chr6 130906490 130906798 -51508444 + AluJo SINE Alu 1 307 -5 26 30 0 0 chr6 130906936 130906969 -51508273 + AT_rich Low_complexity Low_complexity 1 33 0 197 327 71 44 chr6 130907161 130907274 -51507968 + MIR SINE MIR 68 183 -79 231 393 131 35 chr6 130907537 130907850 -51507392 + L2 LINE L2 2925 3267 -5 726 309 36 12 chr6 130907937 130908189 -51507053 + MIR SINE MIR 5 262 0 432 0 0 0 chr6 130909640 130909688 -51505554 + (TG)n Simple_repeat Simple_repeat 2 49 0 429 20 0 0 chr6 130910389 130910439 -51504803 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 346 338 101 31 chr6 130911492 130911720 -51503522 + MIR SINE MIR 9 252 -10 502 324 49 0 chr6 130911873 130912058 -51503184 + MIR SINE MIR 3 196 -66 2368 92 0 0 chr6 130912588 130912881 -51502361 + AluSg SINE Alu 1 293 -17 24 32 0 0 chr6 130913768 130913799 -51501443 + AT_rich Low_complexity Low_complexity 1 31 0 660 310 51 0 chr6 130914234 130914431 -51500811 + MIR SINE MIR 25 231 -31 233 266 25 0 chr6 130914455 130914534 -51500708 + (TA)n Simple_repeat Simple_repeat 2 82 0 306 0 0 0 chr6 130915551 130915585 -51499657 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr6 130915585 130915614 -51499628 + AT_rich Low_complexity Low_complexity 1 29 0 25 83 0 0 chr6 130915903 130915963 -51499279 + AT_rich Low_complexity Low_complexity 1 60 0 377 237 43 36 chr6 130918028 130918167 -51497075 + MIR SINE MIR 13 152 -110 954 238 28 68 chr6 130918620 130918944 -51496298 + MER93a LTR ERV1 92 402 0 651 355 105 13 chr6 130919088 130919479 -51495763 + L2 LINE L2 793 1219 -2095 840 186 61 85 chr6 130919640 130919887 -51495355 - MER57A LTR ERV1 -28 375 135 3374 159 5 5 chr6 130919905 130920497 -51494745 - L1PA16 LINE L1 -3 6163 5572 188 371 52 35 chr6 130920831 130920947 -51494295 + L2 LINE L2 3142 3259 -13 396 318 12 29 chr6 130921099 130921269 -51493973 + MIR SINE MIR 1 167 -95 2096 61 0 58 chr6 130921519 130921814 -51493428 - L1PA7 LINE L1 -11 6143 5866 11928 114 9 27 chr6 130921839 130924297 -51490945 - L1P3 LINE L1 -4001 2460 2 25 65 0 0 chr6 130924570 130924616 -51490626 + AT_rich Low_complexity Low_complexity 1 46 0 2411 115 120 5 chr6 130925488 130925872 -51489370 - MSTA LTR MaLR 0 428 1 254 202 24 36 chr6 130926274 130926358 -51488884 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 195 386 64 0 chr6 130928588 130928728 -51486514 - MIR SINE MIR -17 245 97 213 182 68 0 chr6 130928779 130928823 -51486419 + MIR SINE MIR 122 168 -94 2526 44 3 0 chr6 130929087 130929382 -51485860 - AluY SINE Alu -15 296 1 230 313 109 55 chr6 130929527 130929655 -51485587 + MIR3 SINE MIR 51 185 -23 239 341 77 0 chr6 131132878 131132969 -51282273 + L2 LINE L2 3170 3267 -5 2401 65 0 13 chr6 131133425 131133735 -51281507 + AluY SINE Alu 1 306 -5 1368 203 7 29 chr6 131134237 131134543 -51280699 + AluJo SINE Alu 1 299 -13 214 294 86 31 chr6 131135692 131135855 -51279387 + L2 LINE L2 2324 2495 -819 25 51 0 0 chr6 131136684 131136723 -51278519 + AT_rich Low_complexity Low_complexity 1 39 0 469 300 138 4 chr6 131137744 131137997 -51277245 - L3b LINE CR1 -142 1441 1155 35 0 0 0 chr6 131138646 131138681 -51276561 + AT_rich Low_complexity Low_complexity 1 35 0 1352 271 50 44 chr6 131138806 131139422 -51275820 - HAL1 LINE L1 0 2507 1888 444 255 114 7 chr6 131139495 131139644 -51275598 - HAL1 LINE L1 -628 1879 1715 397 283 67 88 chr6 131139892 131140189 -51275053 + L1MEd LINE L1 11 301 -5818 279 308 60 26 chr6 131140225 131140342 -51274900 + L2 LINE L2 2731 2851 -463 8246 201 64 68 chr6 131140397 131140465 -51274777 - L1MA7 LINE L1 -384 5608 5541 12478 96 7 18 chr6 131140465 131142306 -51272936 - L1PA7 LINE L1 -8 6146 4336 2396 62 0 10 chr6 131142306 131142610 -51272632 - AluY SINE Alu -10 301 1 12478 96 7 18 chr6 131142610 131143433 -51271809 - L1PA7 LINE L1 -1818 4336 3506 8246 201 64 68 chr6 131143433 131146830 -51268412 - L1MA7 LINE L1 -451 5541 2041 4540 147 4 1 chr6 131146830 131147558 -51267684 - L1PA15 LINE L1 -4 6161 5432 8246 201 64 68 chr6 131147558 131149205 -51266037 - L1MA7 LINE L1 -3951 2041 388 771 250 31 20 chr6 131149277 131149473 -51265769 - L1MA7 LINE L1 -5689 202 5 195 220 0 0 chr6 131150333 131150383 -51264859 + (TA)n Simple_repeat Simple_repeat 2 51 0 14751 178 54 11 chr6 131150840 131156834 -51258408 - L1PB1 LINE L1 0 6867 638 1067 185 0 0 chr6 131156838 131157038 -51258204 - L1PB1 LINE L1 -6663 200 1 292 214 0 0 chr6 131157141 131157197 -51258045 - MIR SINE MIR -95 113 58 324 0 0 0 chr6 131157401 131157437 -51257805 + (CA)n Simple_repeat Simple_repeat 1 36 0 304 186 0 0 chr6 131158380 131158439 -51256803 - L2 LINE L2 0 3313 3255 2083 125 8 61 chr6 131159022 131159160 -51256082 - THE1A LTR MaLR 0 355 211 2268 85 10 3 chr6 131159160 131159467 -51255775 - AluY SINE Alu -2 309 1 2083 125 8 61 chr6 131159467 131159703 -51255539 - THE1A LTR MaLR -144 211 1 11389 102 2 8 chr6 131159703 131160886 -51254356 - THE1A-int LTR MaLR 0 1580 407 1935 138 24 0 chr6 131160886 131161177 -51254065 - AluSx SINE Alu -14 298 1 11389 102 2 8 chr6 131161177 131161582 -51253660 - THE1A-int LTR MaLR -1173 407 1 2211 133 11 8 chr6 131161582 131161936 -51253306 - THE1A LTR MaLR 0 355 1 450 264 88 36 chr6 131162863 131163056 -51252186 + MIR SINE MIR 56 258 -4 317 287 84 21 chr6 131163697 131163840 -51251402 + L1ME LINE L1 5653 5804 -317 286 365 71 6 chr6 131164255 131164425 -51250817 + MIR3 SINE MIR 21 201 -7 289 195 11 23 chr6 131164653 131164740 -51250502 + (TA)n Simple_repeat Simple_repeat 1 86 0 233 325 0 12 chr6 131166030 131166113 -51249129 - L2 LINE L2 -5 3267 3186 1530 98 10 0 chr6 131166151 131166355 -51248887 + AluSg/x SINE Alu 91 296 -14 2042 205 39 0 chr6 131166652 131167033 -51248209 + MSTD LTR MaLR 1 396 0 614 192 15 8 chr6 131167035 131167165 -51248077 + MSTD-int LTR MaLR 2 132 -1603 328 139 68 0 chr6 131167170 131167244 -51247998 + MSTC LTR MaLR 306 396 0 2196 48 11 0 chr6 131167713 131167985 -51247257 + AluY SINE Alu 37 311 0 599 277 46 13 chr6 131169821 131170059 -51245183 - L1ME1 LINE L1 -4 6162 5917 1490 203 78 76 chr6 131170079 131170538 -51244704 + MLT1D LTR MaLR 44 503 -2 2848 192 24 39 chr6 131170542 131171176 -51244066 - L1ME1 LINE L1 -281 5885 5262 1423 205 132 57 chr6 131171184 131171679 -51243563 + MLT1F1 LTR MaLR 27 560 -7 1992 231 24 39 chr6 131171682 131172274 -51242968 - L1ME1 LINE L1 -876 5270 4688 205 79 79 0 chr6 131172780 131172818 -51242424 + T-rich Low_complexity Low_complexity 2 42 0 21 0 0 0 chr6 131173895 131173916 -51241326 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 131174222 131174248 -51240994 + AT_rich Low_complexity Low_complexity 1 26 0 2073 126 3 3 chr6 131175381 131175675 -51239567 + AluSq SINE Alu 1 294 -19 209 332 73 16 chr6 131177912 131178060 -51237182 + MIR SINE MIR 5 155 -66 408 266 63 55 chr6 131178702 131178939 -51236303 - L1ME3A LINE L1 -8 6162 5924 1036 277 55 30 chr6 131179006 131179515 -51235727 - L1MC5 LINE L1 -437 7524 7003 594 271 117 97 chr6 131180064 131180558 -51234684 - HAL1b LINE L1 -844 504 1 2175 123 0 0 chr6 131180850 131181160 -51234082 - AluY SINE Alu -1 310 1 2090 221 70 87 chr6 131181415 131182044 -51233198 + MLT1E2 LTR MaLR 1 620 -6 1714 163 23 112 chr6 131183091 131183483 -51231759 - MLT2B3 LTR ERVL -7 547 191 272 70 0 23 chr6 131183507 131183550 -51231692 - MLT2B3 LTR ERVL -512 42 1 1083 183 146 55 chr6 131183612 131183886 -51231356 + AluJo SINE Alu 1 299 -3 30 69 0 0 chr6 131184137 131184195 -51231047 + AT_rich Low_complexity Low_complexity 1 58 0 25580 149 16 12 chr6 131184467 131186065 -51229177 - L1PA8 LINE L1 0 6487 4896 2806 10 0 3 chr6 131186065 131186374 -51228868 - AluYa5 SINE Alu -3 308 1 25580 149 16 12 chr6 131186374 131189960 -51225282 - L1PA8 LINE L1 -1591 4896 1218 243 103 0 0 chr6 131189960 131189999 -51225243 + (TTG)n Simple_repeat Simple_repeat 1 39 0 25580 149 16 12 chr6 131189999 131191221 -51224021 - L1PA8 LINE L1 -5269 1218 2 33 0 0 0 chr6 131191534 131191567 -51223675 + AT_rich Low_complexity Low_complexity 1 33 0 2704 248 85 86 chr6 131192184 131192679 -51222563 - L1ME3 LINE L1 -28 6203 5709 2362 57 0 3 chr6 131192679 131192992 -51222250 + AluY SINE Alu 1 312 0 2704 248 85 86 chr6 131192992 131193944 -51221298 - L1ME3 LINE L1 -522 5709 4758 333 0 0 0 chr6 131193944 131193981 -51221261 + (CA)n Simple_repeat Simple_repeat 2 38 0 2704 248 85 86 chr6 131193981 131194984 -51220258 - L1ME3 LINE L1 -1473 4758 3756 1841 108 16 32 chr6 131194984 131195299 -51219943 - L1MA3 LINE L1 -18 6287 5978 2704 248 85 86 chr6 131195299 131196569 -51218673 - L1ME3 LINE L1 -2475 3756 2487 25 31 0 0 chr6 131196603 131196635 -51218607 + AT_rich Low_complexity Low_complexity 1 32 0 678 301 58 26 chr6 131196676 131197078 -51218164 - L1ME3 LINE L1 -4654 1742 1319 2320 111 0 0 chr6 131197078 131197385 -51217857 - AluSq SINE Alu -6 307 1 678 301 58 26 chr6 131197385 131197484 -51217758 - L1ME3 LINE L1 -5077 1319 1225 2041 178 115 43 chr6 131197763 131198041 -51217201 + LTR64 LTR ERVK 3 260 -298 380 79 0 16 chr6 131198041 131198104 -51217138 - L1PB3 LINE L1 -5 6149 6088 2041 178 115 43 chr6 131198104 131198337 -51216905 + LTR64 LTR ERVK 260 551 -7 2194 119 3 0 chr6 131198419 131198713 -51216529 + AluSx SINE Alu 3 297 -15 287 250 98 30 chr6 131198986 131199118 -51216124 - LTR27 LTR ERV1 -2 634 494 1979 196 67 35 chr6 131199149 131199662 -51215580 - LTR27 LTR ERV1 -140 496 3 344 202 21 32 chr6 131199738 131199832 -51215410 - MLT1K LTR MaLR -9 579 487 1265 159 0 14 chr6 131201187 131201407 -51213835 + L1MC1 LINE L1 6111 6327 -6 14640 48 2 0 chr6 131201529 131204121 -51211121 - L1PA5 LINE L1 -2 6152 3554 180 111 0 0 chr6 131205767 131205794 -51209448 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 229 298 21 0 chr6 131206443 131206537 -51208705 + (TTCA)n Simple_repeat Simple_repeat 2 97 0 334 277 11 0 chr6 131207160 131207254 -51207988 + L2 LINE L2 1733 1827 -1487 644 245 5 36 chr6 131207280 131207476 -51207766 + L2 LINE L2 2399 2588 -726 851 276 142 27 chr6 131208103 131208727 -51206515 + L2 LINE L2 2593 3279 -34 382 300 103 82 chr6 131209191 131209372 -51205870 + L2 LINE L2 2280 2456 -858 2300 98 3 0 chr6 131209372 131209668 -51205574 + AluSp SINE Alu 1 297 -16 382 300 103 82 chr6 131209668 131210059 -51205183 + L2 LINE L2 2456 2864 -450 604 302 108 0 chr6 131210319 131210531 -51204711 - MIR SINE MIR 0 262 28 230 377 0 49 chr6 131210815 131210937 -51204305 + L2 LINE L2 3197 3312 -1 266 140 0 40 chr6 131211093 131211143 -51204099 - U6 snRNA snRNA -59 48 1 215 331 8 24 chr6 131211548 131211672 -51203570 + MIR SINE MIR 97 218 -44 21 57 0 0 chr6 131212517 131212552 -51202690 + AT_rich Low_complexity Low_complexity 1 35 0 437 215 0 6 chr6 131214967 131215060 -51200182 + Tigger7 DNA MER2_type 1 2242 -249 1847 159 10 0 chr6 131215111 131215406 -51199836 - AluSx SINE Alu -14 298 1 2554 149 59 11 chr6 131215406 131215861 -51199381 + MER44D DNA MER2_type 66 597 -8 189 74 0 0 chr6 131216138 131216165 -51199077 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr6 131216339 131216367 -51198875 + AT_rich Low_complexity Low_complexity 1 28 0 1288 189 5 9 chr6 131216367 131216589 -51198653 - MER58A DNA MER1_type 0 224 4 21 57 0 0 chr6 131216945 131216980 -51198262 + AT_rich Low_complexity Low_complexity 1 35 0 2151 97 28 0 chr6 131217269 131217557 -51197685 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr6 131217975 131217997 -51197245 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 131218170 131218194 -51197048 + AT_rich Low_complexity Low_complexity 1 24 0 212 318 15 0 chr6 131218714 131218780 -51196462 + (ATG)n Simple_repeat Simple_repeat 1 67 0 328 160 0 0 chr6 131219055 131219105 -51196137 + MLT1B LTR MaLR 1 50 -340 2032 145 0 0 chr6 131219124 131219420 -51195822 - AluSx SINE Alu -16 296 1 31 58 0 0 chr6 131219704 131219756 -51195486 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr6 131219979 131220000 -51195242 + AT_rich Low_complexity Low_complexity 1 21 0 1012 337 82 27 chr6 131220104 131220932 -51194310 - L1M4 LINE L1 -2796 3350 2477 1754 197 98 13 chr6 131221369 131221750 -51193492 - MSTB1 LTR MaLR -7 425 21 301 371 25 6 chr6 131221760 131221919 -51193323 + L2 LINE L2 2874 3035 -237 683 117 0 67 chr6 131221972 131222058 -51193184 - L1PA15 LINE L1 -2 6163 6086 1492 153 74 49 chr6 131222058 131222424 -51192818 - THE1C LTR MaLR 0 375 1 683 117 0 67 chr6 131222424 131222457 -51192785 - L1PA15 LINE L1 -79 6086 6052 3729 172 8 40 chr6 131222458 131223539 -51191703 - L1PA8A LINE L1 -151 5980 4935 349 271 64 29 chr6 131223964 131224096 -51191146 - MIR SINE MIR -68 140 6 2067 109 14 10 chr6 131225173 131225467 -51189775 + AluSg SINE Alu 1 295 -15 28 61 0 0 chr6 131225467 131225516 -51189726 + AT_rich Low_complexity Low_complexity 1 49 0 220 333 18 27 chr6 131225781 131225892 -51189350 + MIR SINE MIR 70 179 -83 21 0 0 0 chr6 131225908 131225929 -51189313 + AT_rich Low_complexity Low_complexity 1 21 0 204 349 0 0 chr6 131227485 131227548 -51187694 + L2 LINE L2 3203 3265 -7 485 289 21 7 chr6 131228549 131228691 -51186551 - MIR SINE MIR -13 249 106 1316 195 76 93 chr6 131229190 131229553 -51185689 + MLT2D LTR ERVL 1 369 -45 267 54 0 0 chr6 131229553 131229590 -51185652 + (TG)n Simple_repeat Simple_repeat 2 38 0 1941 165 33 0 chr6 131229591 131229924 -51185318 + MER2 DNA MER2_type 1 344 0 1316 195 76 93 chr6 131229924 131229979 -51185263 + MLT2D LTR ERVL 368 414 0 31 42 0 42 chr6 131230450 131230521 -51184721 + AT_rich Low_complexity Low_complexity 1 68 0 599 274 71 55 chr6 131230763 131231073 -51184169 - L2 LINE L2 -567 2747 2433 194 376 47 47 chr6 131231574 131231659 -51183583 - MIR3 SINE MIR -21 187 103 260 214 170 82 chr6 131231772 131231931 -51183311 - MER104 DNA Tc2 -2 178 6 183 80 0 0 chr6 131235044 131235069 -51180173 + (TG)n Simple_repeat Simple_repeat 2 26 0 1440 189 124 19 chr6 131236843 131237607 -51177635 - L1MD2 LINE L1 -17 6342 5335 210 354 13 82 chr6 131238271 131238429 -51176813 - L2 LINE L2 0 3272 3126 209 330 46 46 chr6 131239450 131239559 -51175683 - MIR3 SINE MIR -11 197 89 32 95 0 0 chr6 131240099 131240194 -51175048 + AT_rich Low_complexity Low_complexity 1 95 0 2921 54 3 0 chr6 131241396 131241750 -51173492 + THE1A LTR MaLR 1 355 0 222 62 0 0 chr6 131241870 131241902 -51173340 + (TG)n Simple_repeat Simple_repeat 2 33 0 291 54 0 0 chr6 131242053 131242090 -51173152 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1780 149 15 0 chr6 131242100 131242368 -51172874 - AluSq SINE Alu -41 272 1 2173 78 49 0 chr6 131242839 131243123 -51172119 - AluY SINE Alu -13 298 1 21 0 0 0 chr6 131244037 131244058 -51171184 + AT_rich Low_complexity Low_complexity 1 21 0 420 226 11 0 chr6 131244065 131244158 -51171084 + MER94 DNA DNA 37 130 -4 1579 168 35 75 chr6 131244870 131245245 -51169997 + L1MB8 LINE L1 5416 5775 -403 1917 186 48 12 chr6 131245277 131245691 -51169551 + L1MB8 LINE L1 5744 6172 -6 351 271 68 53 chr6 131246104 131246237 -51169005 + MIR SINE MIR 7 141 -121 26 0 0 0 chr6 131246662 131246688 -51168554 + AT_rich Low_complexity Low_complexity 1 26 0 342 324 92 48 chr6 131247038 131247288 -51167954 + MIR SINE MIR 2 262 0 499 318 88 15 chr6 131247473 131247803 -51167439 + L2 LINE L2 2960 3313 0 682 295 183 19 chr6 131247881 131248247 -51166995 - LTR16A LTR ERVL 0 450 25 524 298 300 10 chr6 131248299 131248692 -51166550 - L2 LINE L2 0 3313 2807 562 74 0 21 chr6 131250834 131250929 -51164313 + (TA)n Simple_repeat Simple_repeat 1 93 0 1900 147 3 20 chr6 131251354 131251647 -51163595 + AluJb SINE Alu 6 293 -19 314 267 23 12 chr6 131251794 131251880 -51163362 - MIR SINE MIR -19 243 157 238 282 26 26 chr6 131251946 131252024 -51163218 + MER5B DNA MER1_type 101 178 0 2211 92 16 3 chr6 131252027 131252331 -51162911 + AluSc SINE Alu 1 308 -1 363 96 0 0 chr6 131252331 131252383 -51162859 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 246 262 295 8 chr6 131252387 131252509 -51162733 - MIR SINE MIR -96 166 10 421 258 207 28 chr6 131252509 131252722 -51162520 + MIR SINE MIR 12 262 0 21 0 0 0 chr6 131252858 131252879 -51162363 + AT_rich Low_complexity Low_complexity 1 21 0 222 333 62 35 chr6 131257106 131257250 -51157992 - MIR SINE MIR -114 148 1 328 295 36 0 chr6 131257825 131257937 -51157305 + GA-rich Low_complexity Low_complexity 2 117 0 183 329 29 0 chr6 131258069 131258139 -51157103 - MIR SINE MIR -115 147 76 895 227 11 0 chr6 131258250 131258435 -51156807 - MER5A DNA MER1_type 0 189 3 223 354 144 6 chr6 131260097 131260278 -51154964 - MIR SINE MIR -56 206 1 23 33 0 0 chr6 131262330 131262360 -51152882 + AT_rich Low_complexity Low_complexity 1 30 0 181 289 229 0 chr6 131262591 131262674 -51152568 + L2 LINE L2 3163 3264 -8 2265 74 0 17 chr6 131264533 131264829 -51150413 - AluSc SINE Alu -18 291 1 2714 172 31 2 chr6 131266258 131266705 -51148537 - MER66B LTR ERV1 0 486 27 201 171 0 0 chr6 131266795 131266830 -51148412 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 608 287 51 26 chr6 131267102 131267297 -51147945 + MIR SINE MIR 20 219 -43 297 351 35 37 chr6 131267290 131267623 -51147619 - L2 LINE L2 -321 2951 2623 * 201 74 0 0 chr6 131267732 131267759 -51147483 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 22 80 0 0 chr6 131268262 131268312 -51146930 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 131269160 131269185 -51146057 + AT_rich Low_complexity Low_complexity 1 25 0 885 215 9 49 chr6 131269519 131269742 -51145500 + MER20 DNA MER1_type 1 214 -5 2428 70 0 0 chr6 131270046 131270346 -51144896 + AluY SINE Alu 1 300 -11 502 297 113 80 chr6 131270716 131271140 -51144102 + L2 LINE L2 2872 3309 -4 288 172 0 0 chr6 131271144 131271202 -51144040 + GA-rich Low_complexity Low_complexity 2 59 0 202 233 0 67 chr6 131271209 131271269 -51143973 - L2 LINE L2 -24 3289 3234 23 68 0 0 chr6 131271589 131271633 -51143609 + AT_rich Low_complexity Low_complexity 1 44 0 1090 333 61 23 chr6 131272320 131273082 -51142160 - L2 LINE L2 -54 3259 2456 301 336 18 19 chr6 131273061 131273210 -51142032 + MIR SINE MIR 15 156 -62 * 23 33 0 0 chr6 131273287 131273317 -51141925 + AT_rich Low_complexity Low_complexity 1 30 0 2058 126 11 0 chr6 131273329 131273631 -51141611 - AluSq SINE Alu 0 311 7 1669 304 63 23 chr6 131273648 131274302 -51140940 + L3 LINE CR1 422 1101 -476 205 333 11 21 chr6 131274533 131274626 -51140616 - L2 LINE L2 -528 2786 2695 276 330 62 0 chr6 131274711 131274823 -51140419 + L3 LINE CR1 1312 1430 -147 31 44 0 0 chr6 131275125 131275170 -51140072 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr6 131276448 131276476 -51138766 + AT_rich Low_complexity Low_complexity 1 28 0 1933 137 27 0 chr6 131276476 131276768 -51138474 + AluSx SINE Alu 1 300 -12 2436 157 50 54 chr6 131276771 131277241 -51138001 - L1MC3 LINE L1 -162 7623 7154 2152 107 3 3 chr6 131277241 131277541 -51137701 - AluSx SINE Alu -12 300 1 2436 157 50 54 chr6 131277541 131277574 -51137668 - L1MC3 LINE L1 -631 7154 7122 320 330 110 0 chr6 131278570 131278761 -51136481 - L1 LINE L1 -783 5363 5152 1076 24 0 0 chr6 131279573 131279728 -51135514 + L1PA5 LINE L1 6017 6171 0 209 261 46 31 chr6 131280000 131280065 -51135177 + L2 LINE L2 3247 3312 -1 365 323 127 0 chr6 131281517 131281675 -51133567 - MIR SINE MIR -13 249 72 2266 217 60 11 chr6 131281762 131282426 -51132816 - Charlie2 DNA MER1_type -1 2861 2165 2115 120 0 3 chr6 131282432 131282733 -51132509 - AluSx SINE Alu -12 300 1 265 208 14 42 chr6 131282826 131282898 -51132344 - Charlie2b DNA MER1_type -1675 1107 1038 532 68 14 0 chr6 131282901 131282974 -51132268 + Alu SINE Alu 1 74 -236 1373 71 12 0 chr6 131283081 131283249 -51131993 + AluSc SINE Alu 127 296 -13 1747 152 84 9 chr6 131283684 131284027 -51131215 + MER21B LTR ERV1 484 852 -11 253 246 0 0 chr6 131284123 131284180 -51131062 - Charlie2 DNA MER1_type -2721 61 5 417 283 75 19 chr6 131284217 131284417 -51130825 + MIR SINE MIR 20 226 -36 35 0 0 0 chr6 131284887 131284922 -51130320 + AT_rich Low_complexity Low_complexity 1 35 0 350 237 40 0 chr6 131285182 131285258 -51129984 - MER21B LTR ERV1 -617 246 168 413 306 121 0 chr6 131285321 131285478 -51129764 - MIR SINE MIR -74 188 13 1887 157 39 12 chr6 131286047 131286384 -51128858 + MER7A DNA MER2_type 2 345 -1 2429 82 0 0 chr6 131286984 131287290 -51127952 + AluY SINE Alu 1 306 -5 3503 149 42 67 chr6 131287721 131288526 -51126716 - LTR1 LTR ERV1 0 785 1 276 100 0 0 chr6 131289172 131289212 -51126030 + (TG)n Simple_repeat Simple_repeat 1 40 0 1758 206 102 29 chr6 131289565 131289949 -51125293 + L1M4c LINE L1 84 495 -5889 5953 221 31 34 chr6 131289954 131291953 -51123289 + L1M4c LINE L1 1603 3608 -2774 2303 148 40 21 chr6 131291953 131292373 -51122869 - MSTA LTR MaLR 0 428 1 5953 221 31 34 chr6 131292373 131292998 -51122244 + L1M4c LINE L1 3608 4212 -2170 1679 226 16 8 chr6 131292998 131293369 -51121873 + MLT1A2 LTR MaLR 1 374 0 5953 221 31 34 chr6 131293369 131293649 -51121593 + L1M4c LINE L1 4212 4492 -1890 246 224 15 0 chr6 131293751 131293818 -51121424 + L1ME4a LINE L1 6049 6116 -5 2263 150 61 10 chr6 131293895 131294302 -51120940 - MSTA LTR MaLR 0 428 1 306 211 13 0 chr6 131294313 131294389 -51120853 + L1P4 LINE L1 5358 5434 -727 399 226 0 24 chr6 131294727 131294811 -51120431 + AluJ/FLAM SINE Alu 2 83 -219 2256 95 16 0 chr6 131295920 131296224 -51119018 + AluSx SINE Alu 1 309 -3 700 284 108 0 chr6 131296339 131296561 -51118681 - MIR SINE MIR -15 247 2 25 0 0 0 chr6 131296775 131296800 -51118442 + AT_rich Low_complexity Low_complexity 1 25 0 2390 89 0 16 chr6 131296832 131297147 -51118095 + AluY SINE Alu 1 310 -1 2453 67 0 22 chr6 131297255 131297567 -51117675 + AluY SINE Alu 1 305 -6 34 42 0 0 chr6 131297823 131297871 -51117371 + AT_rich Low_complexity Low_complexity 1 48 0 1540 185 143 16 chr6 131298271 131298650 -51116592 - MSTA LTR MaLR 0 428 2 21 57 0 0 chr6 131298897 131298932 -51116310 + AT_rich Low_complexity Low_complexity 1 35 0 436 212 245 54 chr6 131299072 131299256 -51115986 - MLT1G3 LTR MaLR -311 219 1 306 302 94 13 chr6 131299352 131299501 -51115741 - MLT1G3-int LTR MaLR 0 1371 1211 22 0 0 0 chr6 131299542 131299564 -51115678 + AT_rich Low_complexity Low_complexity 1 22 0 2883 114 31 2 chr6 131299648 131300094 -51115148 + L1PB3 LINE L1 5693 6151 -3 264 256 31 138 chr6 131300776 131300936 -51114306 - MLT1G3-int LTR MaLR -770 601 459 364 298 192 21 chr6 131301023 131301409 -51113833 - L1M4 LINE L1 -2921 3225 2774 756 107 8 0 chr6 131303062 131303183 -51112059 + AluY SINE Alu 190 311 0 205 262 58 78 chr6 131305260 131305363 -51109879 - MIR SINE MIR -6 256 156 2985 94 17 200 chr6 131305367 131306078 -51109164 + LTR12 LTR ERV1 1 581 -133 1379 269 27 14 chr6 131306690 131307207 -51108035 + L1MD1 LINE L1 4085 4608 -1538 773 194 45 13 chr6 131307213 131307368 -51107874 + AluSg/x SINE Alu 135 294 -16 207 139 0 0 chr6 131307390 131307426 -51107816 + (TA)n Simple_repeat Simple_repeat 1 36 0 857 235 54 24 chr6 131307438 131307736 -51107506 + L1MD1 LINE L1 4646 4952 -1194 380 237 23 17 chr6 131307739 131307916 -51107326 + GA-rich Low_complexity Low_complexity 1 178 0 3390 182 39 46 chr6 131307965 131308365 -51106877 + L1MD1 LINE L1 4963 5364 -878 880 132 69 11 chr6 131308365 131308546 -51106696 + L1MA4 LINE L1 6100 6299 -1 3390 182 39 46 chr6 131308546 131309170 -51106072 + L1MD1 LINE L1 5364 5991 -251 745 213 30 30 chr6 131309188 131309389 -51105853 - AluJb SINE Alu 0 322 122 851 191 0 0 chr6 131309389 131309546 -51105696 + L1MD1 LINE L1 6078 6234 -8 26 30 0 0 chr6 131309657 131309690 -51105552 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr6 131310580 131310608 -51104634 + AT_rich Low_complexity Low_complexity 1 28 0 419 293 98 19 chr6 131310649 131310864 -51104378 - LTR33 LTR ERVL -39 482 251 2085 117 3 16 chr6 131311610 131311919 -51103323 + AluSx SINE Alu 1 305 -7 530 252 289 26 chr6 131313213 131313483 -51101759 - L2 LINE L2 -574 2740 2400 242 252 63 77 chr6 131313596 131313739 -51101503 - L2 LINE L2 -868 2446 2306 1332 187 62 73 chr6 131313739 131314108 -51101134 - MLT1A1 LTR MaLR 0 365 1 572 289 46 23 chr6 131314110 131314328 -51100914 - L2 LINE L2 -1006 2308 2086 235 0 0 54 chr6 131314329 131314366 -51100876 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1503 193 104 0 chr6 131315679 131315948 -51099294 - AluJb SINE Alu -15 297 1 1114 255 214 18 chr6 131315981 131316472 -51098770 - L2 LINE L2 -71 3242 2849 2398 152 80 0 chr6 131316472 131316899 -51098343 + LOR1b LTR ERV1 1 461 0 1114 255 214 18 chr6 131316899 131317238 -51098004 - L2 LINE L2 -464 2849 2256 302 156 107 107 chr6 131317867 131317989 -51097253 + L1ME4a LINE L1 5999 6120 -1 2872 146 14 39 chr6 131318929 131319517 -51095725 - L1MA7 LINE L1 0 6291 5719 1328 117 0 24 chr6 131319518 131319723 -51095519 + L1MA7 LINE L1 5504 5703 -588 2900 3 0 0 chr6 131321185 131321496 -51093746 + AluYb8 SINE Alu 1 311 -7 225 0 0 0 chr6 131322097 131322122 -51093120 + (T)n Simple_repeat Simple_repeat 1 25 0 391 307 107 13 chr6 131322827 131322977 -51092265 - MIR3 SINE MIR -14 194 31 2131 128 10 0 chr6 131323346 131323644 -51091598 - AluSq SINE Alu -12 301 1 1647 187 3 10 chr6 131323850 131324139 -51091103 + AluJo SINE Alu 1 287 -25 437 50 17 0 chr6 131324140 131324200 -51091042 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 588 174 27 7 chr6 131324703 131324852 -51090390 + GA-rich Low_complexity Low_complexity 1 152 0 21 57 0 0 chr6 131325008 131325043 -51090199 + AT_rich Low_complexity Low_complexity 1 35 0 828 272 13 18 chr6 131325252 131325476 -51089766 + MER58A DNA MER1_type 2 224 0 425 218 55 79 chr6 131326124 131326330 -51088912 + MLT1J LTR MaLR 286 425 -21 341 253 11 170 chr6 131329045 131329310 -51085932 + MIR SINE MIR 40 262 0 23 0 0 0 chr6 131329529 131329552 -51085690 + AT_rich Low_complexity Low_complexity 1 23 0 2480 73 0 0 chr6 131329569 131329869 -51085373 + AluY SINE Alu 1 300 -11 198 0 0 0 chr6 131329897 131329919 -51085323 + (CA)n Simple_repeat Simple_repeat 2 23 0 5312 196 49 46 chr6 131329939 131330989 -51084253 + Charlie1a DNA MER1_type 1 1058 -1703 1777 192 0 6 chr6 131330989 131331302 -51083940 - AluJo SINE Alu -1 311 1 5312 196 49 46 chr6 131331302 131331686 -51083556 + Charlie1a DNA MER1_type 1058 1439 -16 414 278 77 5 chr6 131332046 131332255 -51082987 + L1M4 LINE L1 3160 3383 -2763 397 283 98 5 chr6 131332274 131332458 -51082784 + L1M4 LINE L1 3424 3624 -2522 1031 299 276 26 chr6 131332461 131333629 -51081613 - L2 LINE L2 -800 2514 1055 653 291 68 8 chr6 131334456 131334690 -51080552 - MIR SINE MIR -1 261 14 295 237 13 0 chr6 131334909 131334985 -51080257 + MER116 DNA Mariner 3 79 -1 213 318 30 15 chr6 131336331 131336397 -51078845 - MIR3 SINE MIR -34 174 108 38 68 0 0 chr6 131337051 131337124 -51078118 + AT_rich Low_complexity Low_complexity 1 73 0 201 129 0 0 chr6 131337400 131337431 -51077811 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 276 30 0 0 chr6 131337434 131337467 -51077775 + (GGGAA)n Simple_repeat Simple_repeat 3 35 0 692 332 42 10 chr6 131337945 131338255 -51076987 - L3 LINE CR1 -70 1507 1188 21 57 0 0 chr6 131338991 131339026 -51076216 + AT_rich Low_complexity Low_complexity 1 35 0 455 320 80 10 chr6 131339608 131339808 -51075434 + MIR SINE MIR 48 261 -1 27 0 0 0 chr6 131339999 131340026 -51075216 + AT_rich Low_complexity Low_complexity 1 27 0 418 357 0 42 chr6 131340846 131341014 -51074228 + MIR SINE MIR 3 163 -99 288 309 107 39 chr6 131342263 131342441 -51072801 + MIR SINE MIR 14 203 -59 203 204 23 0 chr6 131343628 131343672 -51071570 - MIR SINE MIR -117 145 101 27 49 0 0 chr6 131343831 131343872 -51071370 + AT_rich Low_complexity Low_complexity 1 41 0 2436 42 0 3 chr6 131344243 131344531 -51070711 - AluY SINE Alu -16 295 9 2622 45 0 0 chr6 131344760 131345068 -51070174 - AluY SINE Alu -3 308 1 2026 126 10 0 chr6 131346155 131346456 -51068786 + AluSx SINE Alu 1 304 -8 25 51 0 0 chr6 131347599 131347638 -51067604 + AT_rich Low_complexity Low_complexity 1 39 0 2216 84 0 23 chr6 131348798 131349106 -51066136 + AluY SINE Alu 1 301 -10 207 0 0 0 chr6 131350390 131350413 -51064829 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 705 348 62 9 chr6 131350435 131350771 -51064471 - L3 LINE CR1 -52 1525 1172 200 232 19 19 chr6 131352581 131352645 -51062597 - MIR SINE MIR -60 148 84 288 295 0 0 chr6 131353930 131354025 -51061217 - L1MC/D LINE L1 -502 5831 5737 838 226 5 27 chr6 131354069 131354255 -51060987 - AluJo SINE Alu -82 230 49 6157 244 29 18 chr6 131354315 131356183 -51059059 - L1MC/D LINE L1 -1928 4218 2326 1400 177 102 8 chr6 131356183 131356448 -51058794 - AluJb SINE Alu -22 290 1 6157 244 29 18 chr6 131356448 131356493 -51058749 - L1MC/D LINE L1 -3820 2326 2283 640 117 0 0 chr6 131356501 131356595 -51058647 - AluSg/x SINE Alu -7 302 209 21 0 0 0 chr6 131357803 131357824 -51057418 + AT_rich Low_complexity Low_complexity 1 21 0 1607 219 5 11 chr6 131360367 131360741 -51054501 - L1ME1 LINE L1 -5 6161 5790 835 288 135 7 chr6 131360893 131361345 -51053897 + LTR33A LTR ERVL 8 517 -6 376 262 63 32 chr6 131361406 131361532 -51053710 - MIR SINE MIR -68 194 65 2392 72 0 3 chr6 131361667 131361973 -51053269 + AluY SINE Alu 1 305 -6 747 301 65 82 chr6 131361976 131362643 -51052599 - HERV16-B3 LTR ERVL -2374 2622 1971 320 148 0 0 chr6 131362914 131362968 -51052274 - MLT2A1 LTR ERVL 0 453 400 281 197 14 0 chr6 131362968 131363039 -51052203 + (TG)n Simple_repeat Simple_repeat 2 73 0 2701 72 69 8 chr6 131363039 131363416 -51051826 - MLT2A1 LTR ERVL -44 400 1 359 58 0 0 chr6 131363435 131363487 -51051755 - L1PA15 LINE L1 -13 6152 6101 442 171 0 18 chr6 131363719 131363830 -51051412 + CT-rich Low_complexity Low_complexity 4 112 0 203 330 131 46 chr6 131364927 131365315 -51049927 - L2 LINE L2 -556 2758 2338 380 283 62 14 chr6 131365378 131365523 -51049719 - MIR SINE MIR -70 192 41 454 336 137 38 chr6 131365600 131366279 -51048963 - L2 LINE L2 -963 2351 1606 443 288 46 0 chr6 131366923 131367076 -51048166 - MER103 DNA DNA 0 166 7 258 32 0 0 chr6 131368086 131368117 -51047125 + (TG)n Simple_repeat Simple_repeat 2 32 0 654 300 92 0 chr6 131368797 131369037 -51046205 - HERV16-B3 LTR ERVL -3647 1349 1088 821 216 22 22 chr6 131369060 131369241 -51046001 + MER58A DNA MER1_type 32 212 -12 257 191 0 0 chr6 131369260 131369302 -51045940 - HERV16-B3 LTR ERVL -3908 1088 1047 1307 343 48 9 chr6 131369447 131370031 -51045211 - HERV16-B3 LTR ERVL -4122 874 268 5536 154 30 10 chr6 131370572 131372148 -51043094 - L1PA16 LINE L1 -2 6164 4558 2419 76 0 0 chr6 131373453 131373755 -51041487 + AluY SINE Alu 1 302 -9 1658 207 99 67 chr6 131374062 131374599 -51040643 - MLT2B3 LTR ERVL 0 554 1 2781 19 0 0 chr6 131374673 131374982 -51040260 + AluYb8 SINE Alu 1 309 -9 22 0 0 0 chr6 131375145 131375167 -51040075 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 131375251 131375274 -51039968 + AT_rich Low_complexity Low_complexity 1 23 0 1559 97 0 18 chr6 131375445 131375673 -51039569 - pTR5 LTR ERV1 -2043 395 172 356 245 10 0 chr6 131375676 131375774 -51039468 - LTR30 LTR ERV1 -80 642 544 5300 131 115 33 chr6 131375774 131376879 -51038363 - pTR5 LTR ERV1 -413 2025 743 23 54 0 0 chr6 131377451 131377488 -51037754 + AT_rich Low_complexity Low_complexity 1 37 0 537 276 139 34 chr6 131377828 131378274 -51036968 + HAL1b LINE L1 555 1047 -301 793 278 80 42 chr6 131378313 131378697 -51036545 - MER57A LTR ERV1 0 403 1 379 309 0 7 chr6 131378776 131378915 -51036327 + HAL1b LINE L1 1180 1317 -31 344 270 72 79 chr6 131379622 131379774 -51035468 - MIR3 SINE MIR -41 167 17 248 347 63 26 chr6 131380407 131380597 -51034645 - L2 LINE L2 -4 3309 3113 181 286 14 43 chr6 131380886 131380956 -51034286 + L2 LINE L2 1066 1133 -2181 2060 134 0 10 chr6 131381142 131381447 -51033795 - AluSx SINE Alu -10 302 1 1032 265 88 16 chr6 131381965 131382520 -51032722 + L1MB7 LINE L1 2938 3532 -2614 962 298 64 54 chr6 131382530 131382996 -51032246 + REP3 LTR ERV 6 476 -86 2068 208 90 146 chr6 131383103 131383660 -51031582 + L1MB7 LINE L1 3533 4119 -2027 213 94 0 0 chr6 131383660 131383692 -51031550 + (TAA)n Simple_repeat Simple_repeat 3 34 0 2068 208 90 146 chr6 131383692 131383776 -51031466 + L1MB7 LINE L1 4119 4206 -1940 195 42 0 0 chr6 131383776 131383800 -51031442 + (CA)n Simple_repeat Simple_repeat 1 24 0 2068 208 90 146 chr6 131383800 131383837 -51031405 + L1MB7 LINE L1 4206 4243 -1903 1213 99 25 0 chr6 131383837 131383998 -51031244 - AluSq SINE Alu -66 247 83 2068 208 90 146 chr6 131383998 131384563 -51030679 + L1MB7 LINE L1 4243 4860 -1286 4623 204 55 7 chr6 131384563 131386481 -51028761 - L1MB7 LINE L1 -8 6176 4150 216 0 0 0 chr6 131386481 131386505 -51028737 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4623 204 55 7 chr6 131386505 131386570 -51028672 - L1MB7 LINE L1 -2034 4150 4090 2586 239 58 28 chr6 131386566 131387604 -51027638 + L1MB7 LINE L1 4847 5939 -245 * 2189 116 0 0 chr6 131387604 131387907 -51027335 - AluSx SINE Alu -9 303 1 2586 239 58 28 chr6 131387907 131388143 -51027099 + L1MB7 LINE L1 5939 6166 -18 331 309 59 55 chr6 131388219 131388439 -51026803 + L1ME4a LINE L1 4110 4330 -1816 281 227 36 18 chr6 131388456 131388566 -51026676 + (TA)n Simple_repeat Simple_repeat 1 112 0 341 284 99 10 chr6 131388569 131388861 -51026381 + L1ME4a LINE L1 4399 4716 -1430 23 0 0 0 chr6 131391375 131391398 -51023844 + AT_rich Low_complexity Low_complexity 1 23 0 553 291 79 18 chr6 131391779 131392006 -51023236 + MIR SINE MIR 3 243 -19 410 288 82 27 chr6 131393976 131394195 -51021047 + L1ME4a LINE L1 5657 5887 -234 695 303 55 5 chr6 131395072 131395290 -51019952 - MIR SINE MIR -5 257 29 316 301 73 8 chr6 131395311 131395434 -51019808 - MIR SINE MIR -16 246 116 334 336 63 0 chr6 131396355 131396498 -51018744 + L2 LINE L2 2979 3130 -183 347 239 23 11 chr6 131396498 131396586 -51018656 + MER94 DNA DNA 1 89 -45 441 240 47 88 chr6 131396615 131396786 -51018456 + L2 LINE L2 3124 3287 -26 2167 67 0 33 chr6 131396787 131397086 -51018156 + AluY SINE Alu 1 289 -22 701 285 113 44 chr6 131397170 131397646 -51017596 + MLT1H1 LTR MaLR 9 549 0 369 279 174 7 chr6 131398173 131398449 -51016793 - L1ME4a LINE L1 -70 6051 5730 2219 84 16 7 chr6 131399699 131400007 -51015235 - AluY SINE Alu 0 311 1 3560 83 26 2 chr6 131400266 131400762 -51014480 - L1PA13 LINE L1 -3 6160 5653 180 326 249 11 chr6 131400832 131401013 -51014229 - MIR SINE MIR -26 236 13 1532 240 65 50 chr6 131401064 131401523 -51013719 - LTR40a LTR ERVL -53 466 1 289 221 11 39 chr6 131401904 131402007 -51013235 + LTR40a LTR ERVL 118 170 -292 550 56 0 0 chr6 131404287 131404359 -51010883 - AluSc SINE Alu -7 302 231 2169 93 0 7 chr6 131404360 131404649 -51010593 - AluSc SINE Alu -22 287 1 212 344 11 11 chr6 131405129 131405222 -51010020 + L2 LINE L2 1191 1283 -2031 417 20 0 0 chr6 131405225 131405275 -51009967 + (TG)n Simple_repeat Simple_repeat 2 51 0 1047 129 83 21 chr6 131405412 131405605 -51009637 - L1PA16 LINE L1 -3 6163 5959 1006 274 51 36 chr6 131406140 131406607 -51008635 + MLT1C LTR MaLR 1 467 0 25 51 0 0 chr6 131406612 131406651 -51008591 + AT_rich Low_complexity Low_complexity 1 39 0 289 321 19 19 chr6 131407097 131407203 -51008039 - L2 LINE L2 -556 2758 2653 315 0 0 0 chr6 131409099 131409134 -51006108 + (TG)n Simple_repeat Simple_repeat 1 35 0 299 400 44 0 chr6 131409382 131409587 -51005655 - L2 LINE L2 -219 3053 2840 465 298 42 15 chr6 131409753 131409941 -51005301 + MIR SINE MIR 3 193 -65 330 344 96 13 chr6 131410028 131410185 -51005057 + MIR SINE MIR 20 189 -73 384 87 0 223 chr6 131410193 131410296 -51004946 - MADE1 DNA Mariner 0 80 1 227 200 133 40 chr6 131410817 131410892 -51004350 - MIR SINE MIR -95 167 86 21 0 0 0 chr6 131412384 131412405 -51002837 + AT_rich Low_complexity Low_complexity 1 21 0 194 234 85 0 chr6 131412454 131412501 -51002741 + L3 LINE CR1 1204 1254 -323 5595 157 68 41 chr6 131412685 131413264 -51001978 - Tigger3b DNA MER2_type -1797 1231 669 1716 68 5 0 chr6 131413264 131413485 -51001757 - AluY SINE Alu -60 251 30 5595 157 68 41 chr6 131413485 131413558 -51001684 - Tigger3b DNA MER2_type -2359 669 599 441 0 0 0 chr6 131413558 131413607 -51001635 + (CA)n Simple_repeat Simple_repeat 2 50 0 5595 157 68 41 chr6 131413607 131414144 -51001098 - Tigger3b DNA MER2_type -2429 599 9 515 229 98 74 chr6 131414202 131414470 -51000772 - MER52A LTR ERV1 -10 495 275 615 202 0 8 chr6 131414475 131414594 -51000648 - LTR28 LTR ERV1 -902 118 1 3487 282 107 18 chr6 131414667 131415819 -50999423 + L2 LINE L2 1419 2777 -536 2813 12 0 9 chr6 131415819 131416140 -50999102 + AluYb8 SINE Alu 1 318 0 3487 282 107 18 chr6 131416140 131416723 -50998519 + L2 LINE L2 2777 3307 -6 362 276 147 0 chr6 131416748 131416864 -50998378 + MIR SINE MIR 11 143 -119 566 198 0 10 chr6 131416870 131416971 -50998271 + FLAM_A SINE Alu 1 100 -42 25 31 0 0 chr6 131416992 131417024 -50998218 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr6 131417189 131417232 -50998010 + AT_rich Low_complexity Low_complexity 1 43 0 32 67 0 0 chr6 131417384 131417444 -50997798 + AT_rich Low_complexity Low_complexity 1 60 0 27 49 0 0 chr6 131419486 131419527 -50995715 + AT_rich Low_complexity Low_complexity 1 41 0 380 354 138 31 chr6 131420647 131421125 -50994117 - L2 LINE L2 -1217 2097 1569 484 272 149 43 chr6 131421150 131421385 -50993857 - MIR SINE MIR -2 260 1 477 294 86 10 chr6 131421669 131421866 -50993376 - MIR SINE MIR -50 212 1 21 57 0 0 chr6 131422493 131422528 -50992714 + AT_rich Low_complexity Low_complexity 1 35 0 1241 77 0 0 chr6 131422942 131423097 -50992145 + U1 snRNA snRNA 1 155 -10 2093 144 3 0 chr6 131423875 131424187 -50991055 + AluSq SINE Alu 1 313 0 24 32 0 0 chr6 131424548 131424579 -50990663 + AT_rich Low_complexity Low_complexity 1 31 0 823 328 48 11 chr6 131425002 131425353 -50989889 - MLT1J2 LTR MaLR -56 394 31 1136 241 91 47 chr6 131425359 131425409 -50989833 + MLT1C LTR MaLR 1 47 -420 2363 34 9 44 chr6 131425409 131425729 -50989513 - AluY SINE Alu -2 309 1 1136 241 91 47 chr6 131425729 131426106 -50989136 + MLT1C LTR MaLR 47 447 -20 347 320 87 63 chr6 131426176 131426476 -50988766 + L1MEd LINE L1 90 396 -5809 880 211 73 50 chr6 131426482 131426697 -50988545 - MER33 DNA MER1_type -2261 324 98 688 240 0 0 chr6 131426697 131426826 -50988416 + FLAM_A SINE Alu 1 129 -4 880 211 73 50 chr6 131426826 131426927 -50988315 - MER33 DNA MER1_type -2487 98 1 345 271 8 0 chr6 131426930 131427048 -50988194 + L1MEd LINE L1 2271 2389 -4007 3029 287 53 16 chr6 131427095 131428423 -50986819 + L1MEc LINE L1 834 2048 -4895 21 0 0 0 chr6 131428521 131428542 -50986700 + AT_rich Low_complexity Low_complexity 1 21 0 2226 114 7 0 chr6 131433189 131433495 -50981747 - AluSg SINE Alu -2 308 1 682 300 147 37 chr6 131433713 131434420 -50980822 + L2 LINE L2 1227 2011 -1303 24 32 0 0 chr6 131434939 131434970 -50980272 + AT_rich Low_complexity Low_complexity 1 31 0 1341 229 32 32 chr6 131435700 131436072 -50979170 - MLT1A2 LTR MaLR -2 372 1 990 219 76 78 chr6 131436937 131437334 -50977908 - MSTD LTR MaLR 0 396 1 22 56 0 0 chr6 131437426 131437462 -50977780 + AT_rich Low_complexity Low_complexity 1 36 0 617 253 30 21 chr6 131437919 131438152 -50977090 + LTR55 LTR ERV 288 522 -26 254 259 0 0 chr6 131438499 131438557 -50976685 - MER58 DNA MER1_type -8 2412 2355 496 226 15 73 chr6 131438597 131438617 -50976625 - MER58C DNA MER1_type -86 129 109 24886 43 1 3 chr6 131438617 131442518 -50972724 - L1PA5 LINE L1 0 6154 2258 496 226 15 73 chr6 131442518 131442634 -50972608 - MER58C DNA MER1_type -106 109 1 244 403 34 7 chr6 131442685 131442834 -50972408 + L2 LINE L2 2902 3054 -218 3982 271 51 54 chr6 131443179 131444962 -50970280 + L1MEc LINE L1 48 1824 -4902 2143 263 88 18 chr6 131444987 131446603 -50968639 + L1MEc LINE L1 2081 3933 -3008 1120 168 0 0 chr6 131447065 131447238 -50968004 + AluSx SINE Alu 2 174 -138 180 365 0 58 chr6 131448247 131448351 -50966891 - L2 LINE L2 -346 2926 2829 28 61 0 0 chr6 131448616 131448665 -50966577 + AT_rich Low_complexity Low_complexity 1 49 0 466 86 100 0 chr6 131448735 131448805 -50966437 - MADE1 DNA Mariner -3 77 1 21 0 0 0 chr6 131448900 131448921 -50966321 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 131448972 131448996 -50966246 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr6 131449041 131449061 -50966181 + (TC)n Simple_repeat Simple_repeat 1 20 0 313 314 78 20 chr6 131449719 131449872 -50965370 - MIR SINE MIR -52 210 49 279 259 24 0 chr6 131450478 131450563 -50964679 + Charlie8 DNA MER1_type 62 148 -2269 445 178 28 0 chr6 131451333 131451440 -50963802 + CT-rich Low_complexity Low_complexity 3 112 0 2122 103 10 0 chr6 131451442 131451744 -50963498 - AluSg SINE Alu -5 305 1 3347 151 80 58 chr6 131452481 131453221 -50962021 + L1PB4 LINE L1 5397 6152 -4 21 71 0 0 chr6 131453222 131453264 -50961978 + AT_rich Low_complexity Low_complexity 1 42 0 775 351 58 38 chr6 131453508 131454164 -50961078 + L1M4 LINE L1 37 705 -5250 7705 214 52 35 chr6 131454276 131455688 -50959554 + L1M3f LINE L1 556 1942 -4386 2015 13 52 0 chr6 131455688 131455921 -50959321 + AluYa5 SINE Alu 48 292 -19 7705 214 52 35 chr6 131455921 131458079 -50957163 + L1M3f LINE L1 1942 4168 -2160 4030 202 110 131 chr6 131458162 131459954 -50955288 - MER52A LTR ERV1 0 1755 1 270 331 97 31 chr6 131460263 131460553 -50954689 - L2 LINE L2 -61 3252 2944 209 246 58 14 chr6 131460567 131460636 -50954606 + MIR SINE MIR 176 247 -15 21 0 0 0 chr6 131460790 131460811 -50954431 + AT_rich Low_complexity Low_complexity 1 21 0 188 301 60 24 chr6 131461216 131461299 -50953943 + MIR3 SINE MIR 121 206 -2 23 105 0 0 chr6 131461999 131462085 -50953157 + AT_rich Low_complexity Low_complexity 1 86 0 234 105 0 0 chr6 131462460 131462498 -50952744 + (TG)n Simple_repeat Simple_repeat 2 39 0 217 308 6 83 chr6 131462670 131462826 -50952416 + L2 LINE L2 3118 3261 -52 2029 196 40 5 chr6 131463277 131463679 -50951563 + MER47B DNA MER2_type 2 417 -1 34 42 0 0 chr6 131463860 131463908 -50951334 + AT_rich Low_complexity Low_complexity 1 48 0 313 337 67 32 chr6 131463920 131464202 -50951040 + L1M4 LINE L1 2798 3089 -2945 198 0 0 0 chr6 131464499 131464521 -50950721 + (A)n Simple_repeat Simple_repeat 1 22 0 2339 64 3 13 chr6 131464522 131464836 -50950406 + AluY SINE Alu 1 311 0 5935 210 68 89 chr6 131464851 131467168 -50948074 - L1M4 LINE L1 -625 5553 3314 398 118 0 0 chr6 131467168 131467236 -50948006 - L1MA7 LINE L1 0 6291 6224 5935 210 68 89 chr6 131467236 131467589 -50947653 - L1M4 LINE L1 -2864 3314 2955 37 0 0 0 chr6 131469161 131469198 -50946044 + AT_rich Low_complexity Low_complexity 1 37 0 356 301 116 0 chr6 131469470 131469616 -50945626 - MIR3 SINE MIR -13 195 33 726 161 61 22 chr6 131472782 131472983 -50942259 + L1MA7 LINE L1 6077 6291 -9 24 0 0 0 chr6 131473341 131473365 -50941877 + AT_rich Low_complexity Low_complexity 1 24 0 3140 175 34 3 chr6 131473654 131474293 -50940949 - L1MA8 LINE L1 -1241 4905 4247 2969 165 97 18 chr6 131474291 131475119 -50940123 + L1MA8 LINE L1 4916 5831 -460 * 228 86 0 0 chr6 131475119 131475154 -50940088 + (CA)n Simple_repeat Simple_repeat 2 36 0 2969 165 97 18 chr6 131475154 131475330 -50939912 + L1MA8 LINE L1 5831 5992 -299 1364 95 9 5 chr6 131475337 131475548 -50939694 + L1MA8 LINE L1 6077 6288 -3 453 336 82 34 chr6 131476884 131477238 -50938004 + MLT1J LTR MaLR 2 372 -139 39 38 0 0 chr6 131478690 131478743 -50936499 + AT_rich Low_complexity Low_complexity 1 53 0 2191 79 7 0 chr6 131478749 131479064 -50936178 + AluY SINE Alu 2 318 0 366 326 38 43 chr6 131479077 131479261 -50935981 + MIR3 SINE MIR 21 203 -5 904 221 48 10 chr6 131479430 131479638 -50935604 - L1ME1 LINE L1 -19 6147 5932 267 243 43 14 chr6 131479786 131479856 -50935386 - MIR SINE MIR -118 144 73 333 250 42 49 chr6 131479860 131480011 -50935231 + MLT1J LTR MaLR 351 605 -10 665 207 16 3 chr6 131480163 131480307 -50934935 - L1PA16 LINE L1 0 6166 6023 1333 166 54 36 chr6 131480481 131480754 -50934488 + AluJo SINE Alu 1 279 -30 2228 145 56 7 chr6 131480754 131481162 -50934080 - MSTA LTR MaLR 0 428 1 31 26 0 0 chr6 131481171 131481209 -50934033 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 131481484 131481505 -50933737 + AT_rich Low_complexity Low_complexity 1 21 0 2172 74 2 1 chr6 131481692 131481992 -50933250 - L1PA6 LINE L1 -261 5890 5589 1199 67 12 0 chr6 131481992 131482150 -50933092 + L1PA6 LINE L1 5989 6154 0 640 297 28 16 chr6 131483665 131483847 -50931395 - MIR SINE MIR -30 232 49 341 359 0 21 chr6 131484120 131484265 -50930977 + MLT1K LTR MaLR 94 235 -353 252 298 170 14 chr6 131484412 131484553 -50930689 + MLT1L LTR MaLR 449 611 -4 1748 78 0 9 chr6 131484622 131484853 -50930389 + AluY SINE Alu 1 229 -82 618 314 10 10 chr6 131485573 131485780 -50929462 - MIR SINE MIR -51 211 5 325 351 82 35 chr6 131487622 131487964 -50927278 + L2 LINE L2 2494 2851 -463 367 336 70 8 chr6 131488205 131488333 -50926909 + L2 LINE L2 3137 3272 0 607 299 35 35 chr6 131488948 131489179 -50926063 + MIR SINE MIR 2 232 -30 520 249 42 42 chr6 131489389 131489455 -50925787 + L2 LINE L2 3095 3160 -153 1186 233 13 54 chr6 131489455 131489769 -50925473 - AluJo SINE Alu -1 301 1 520 249 42 42 chr6 131489769 131489891 -50925351 + L2 LINE L2 3159 3283 -30 1828 181 0 0 chr6 131490088 131490386 -50924856 + AluJb SINE Alu 1 298 -14 292 288 122 14 chr6 131491446 131491585 -50923657 + MIR SINE MIR 96 249 -13 5592 119 52 64 chr6 131491691 131492858 -50922384 + pTR5 LTR ERV1 741 2025 -413 362 204 41 31 chr6 131492858 131492956 -50922286 + LTR30 LTR ERV1 544 642 -80 1240 93 67 5 chr6 131492957 131493150 -50922092 + LTR12 LTR ERV1 377 581 -133 1306 77 12 0 chr6 131493417 131493587 -50921655 - AluY SINE Alu -19 292 121 238 233 0 33 chr6 131493683 131493743 -50921499 + MLT1F1 LTR MaLR 67 124 -443 335 251 0 2 chr6 131493743 131493830 -50921412 + L1MC3 LINE L1 7205 7490 -505 297 154 67 106 chr6 131493831 131493935 -50921307 + LTR54 LTR ERV1 59 158 -352 1982 209 47 28 chr6 131494077 131494584 -50920658 + L1MD3 LINE L1 7478 7994 -1 25 31 0 0 chr6 131494585 131494617 -50920625 + AT_rich Low_complexity Low_complexity 1 32 0 838 209 233 32 chr6 131495028 131495277 -50919965 - AluJo SINE Alu -3 299 1 383 308 101 18 chr6 131496145 131496314 -50918928 - MIR SINE MIR -1 261 79 186 296 19 19 chr6 131496707 131496761 -50918481 - MIR SINE MIR -133 75 22 787 266 57 50 chr6 131497911 131498193 -50917049 - L3b LINE CR1 -113 1470 1187 22 80 0 0 chr6 131499705 131499755 -50915487 + AT_rich Low_complexity Low_complexity 1 50 0 1684 181 7 16 chr6 131501887 131502191 -50913051 + AluJo SINE Alu 1 301 -11 802 275 67 12 chr6 131502314 131502554 -50912688 + MIR SINE MIR 2 254 -8 336 64 0 0 chr6 131502640 131502687 -50912555 + (TG)n Simple_repeat Simple_repeat 2 48 0 475 277 132 13 chr6 131502755 131502914 -50912328 - MER5B DNA MER1_type 0 178 1 21 71 0 0 chr6 131502933 131502975 -50912267 + AT_rich Low_complexity Low_complexity 1 42 0 327 320 198 5 chr6 131503341 131503538 -50911704 - MIR SINE MIR 0 262 28 25 31 0 0 chr6 131503620 131503652 -50911590 + AT_rich Low_complexity Low_complexity 1 32 0 316 375 80 42 chr6 131504427 131504997 -50910245 - L2 LINE L2 -840 2474 1880 2275 166 80 21 chr6 131504997 131505474 -50909768 + MLT1D LTR MaLR 1 505 0 316 375 80 42 chr6 131505474 131505492 -50909750 - L2 LINE L2 -1434 1880 1864 685 271 6 0 chr6 131505565 131505731 -50909511 + MIR SINE MIR 96 262 0 444 281 82 97 chr6 131505919 131506385 -50908857 + MLT1J LTR MaLR 1 459 -52 234 278 124 0 chr6 131506552 131506649 -50908593 - MIR SINE MIR -1 261 153 13982 141 29 4 chr6 131506651 131508938 -50906304 - Tigger1 DNA MER2_type 0 2418 74 348 338 21 7 chr6 131508972 131509117 -50906125 - MIR SINE MIR -114 148 2 22 35 0 0 chr6 131509477 131509506 -50905736 + AT_rich Low_complexity Low_complexity 1 29 0 674 260 12 17 chr6 131510145 131510318 -50904924 - MIR SINE MIR -26 236 65 803 276 28 0 chr6 131510541 131510758 -50904484 - MIR SINE MIR -28 234 12 340 324 143 48 chr6 131511277 131511718 -50903524 - L2 LINE L2 0 3313 2831 965 288 33 21 chr6 131511887 131512217 -50903025 - LTR16B LTR ERVL 0 464 131 299 82 55 41 chr6 131512423 131512496 -50902746 + GA-rich Low_complexity Low_complexity 2 75 0 279 275 26 43 chr6 131513106 131513286 -50901956 - MLT1J2 LTR MaLR 0 420 281 351 202 36 12 chr6 131513355 131513439 -50901803 - MLT1J2 LTR MaLR -282 168 83 365 313 106 18 chr6 131514915 131515142 -50900100 + MIR SINE MIR 12 258 -4 1967 131 37 10 chr6 131515160 131515724 -50899518 + LTR24C LTR ERV1 1 635 0 1197 124 0 0 chr6 131515967 131516162 -50899080 - AluSg/x SINE Alu 0 318 124 351 361 47 63 chr6 131516191 131516416 -50898826 + L1ME LINE L1 424 644 -5728 2070 212 38 70 chr6 131516416 131517048 -50898194 + LTR9 LTR ERV1 1 612 0 351 361 47 63 chr6 131517048 131517121 -50898121 + L1ME LINE L1 644 717 -5655 336 270 148 43 chr6 131517516 131517938 -50897304 + L1ME LINE L1 1023 1353 -5031 2567 179 2 2 chr6 131517970 131518394 -50896848 + MSTB LTR MaLR 1 424 -2 8128 194 51 9 chr6 131518407 131519982 -50895260 + MSTB-int LTR MaLR 11 1651 0 2228 187 55 0 chr6 131519984 131520386 -50894856 + MSTB LTR MaLR 3 426 0 965 266 46 46 chr6 131520450 131520953 -50894289 + L1ME LINE L1 1554 2056 -4507 1819 224 44 15 chr6 131520954 131521432 -50893810 + L1MCc LINE L1 18 509 -5914 434 325 25 10 chr6 131521646 131521843 -50893399 + LTR67 LTR ERVL 358 557 0 648 263 6 12 chr6 131522416 131522587 -50892655 - MER5B DNA MER1_type -1 177 8 182 284 136 0 chr6 131522610 131522691 -50892551 + MER5A DNA MER1_type 21 112 -77 * 191 219 24 0 chr6 131522683 131522724 -50892518 - MER5A DNA MER1_type -114 75 34 358 319 30 22 chr6 131523847 131523982 -50891260 + L2 LINE L2 3159 3294 -19 2179 135 43 3 chr6 131524808 131525157 -50890085 - Tigger7 DNA MER2_type -4 2583 2221 1531 209 20 0 chr6 131525154 131525446 -50889796 - Tigger7 DNA MER2_type -2189 298 1 * 297 283 138 73 chr6 131525548 131525902 -50889340 - MLT1J LTR MaLR -23 488 112 217 316 40 0 chr6 131526101 131526177 -50889065 + (CATG)n Simple_repeat Simple_repeat 2 80 0 265 284 0 0 chr6 131526883 131526957 -50888285 + MLT2C1 LTR ERVL 49 122 -275 * 1984 232 82 19 chr6 131526918 131527431 -50887811 + MLT1E2 LTR MaLR 80 624 -2 1497 235 9 25 chr6 131527433 131527930 -50887312 + MLT1E2-int LTR MaLR 1 603 -768 1334 304 87 33 chr6 131528115 131528760 -50886482 + MLT1E2-int LTR MaLR 692 1371 0 2144 227 81 25 chr6 131528760 131529351 -50885891 + MLT1E2 LTR MaLR 1 624 -2 273 220 150 40 chr6 131529638 131529738 -50885504 - L2 LINE L2 -4 3309 3199 190 327 59 65 chr6 131530394 131530547 -50884695 - MIR3 SINE MIR -46 162 11 351 0 0 0 chr6 131531063 131531102 -50884140 + (CA)n Simple_repeat Simple_repeat 1 39 0 3472 87 0 2 chr6 131531668 131532142 -50883100 - L1PA13 LINE L1 -8 6155 5683 728 349 27 9 chr6 131532253 131532583 -50882659 + MLT1I LTR MaLR 63 398 -11 276 319 64 32 chr6 131532609 131532766 -50882476 + L1M4 LINE L1 4018 4179 -1967 371 224 145 22 chr6 131532923 131533102 -50882140 + L1M4 LINE L1 4317 4517 -1629 209 229 0 14 chr6 131533373 131533443 -50881799 + GA-rich Low_complexity Low_complexity 3 71 0 229 269 0 0 chr6 131533625 131533677 -50881565 + GA-rich Low_complexity Low_complexity 2 53 0 12777 189 27 20 chr6 131533749 131536173 -50879069 - Tigger2 DNA MER2_type -29 2689 249 7318 36 1 1 chr6 131536199 131537089 -50878153 - L1PA4 LINE L1 -3 6152 5263 10495 27 2 0 chr6 131537089 131538332 -50876910 + L1PA4 LINE L1 4017 5262 -884 1284 164 0 26 chr6 131538332 131538601 -50876641 - Tigger2 DNA MER2_type -2456 262 1 1685 158 60 0 chr6 131538624 131538909 -50876333 + AluJo SINE Alu 1 302 -10 692 298 121 1 chr6 131538921 131539270 -50875972 + L1ME LINE L1 5317 5714 -456 261 143 0 43 chr6 131539695 131539765 -50875477 + (GAGAA)n Simple_repeat Simple_repeat 4 70 0 26 0 0 0 chr6 131540349 131540375 -50874867 + AT_rich Low_complexity Low_complexity 1 26 0 241 320 32 26 chr6 131540876 131541032 -50874210 - MER89 LTR ERV1 -29 530 374 23 54 0 0 chr6 131541644 131541681 -50873561 + AT_rich Low_complexity Low_complexity 1 37 0 325 306 133 56 chr6 131542050 131542246 -50872996 - MIR SINE MIR -32 230 20 368 313 17 95 chr6 131542282 131542461 -50872781 - MER5A DNA MER1_type -22 167 3 3860 134 15 21 chr6 131542614 131543286 -50871956 + L1PA16 LINE L1 5491 6158 -8 189 180 0 0 chr6 131544066 131544116 -50871126 + (TA)n Simple_repeat Simple_repeat 2 51 0 1037 124 0 6 chr6 131544871 131545032 -50870210 - L1PB4 LINE L1 -1 6155 5996 35 41 0 0 chr6 131545518 131545567 -50869675 + AT_rich Low_complexity Low_complexity 1 49 0 405 306 83 29 chr6 131545650 131545964 -50869278 + L1ME4a LINE L1 5268 5598 -523 478 263 169 70 chr6 131545969 131546148 -50869094 + L1ME4a LINE L1 5630 5790 -331 1397 227 3 0 chr6 131546148 131546453 -50868789 + AluJo SINE Alu 4 309 0 478 263 169 70 chr6 131546453 131546698 -50868544 + L1ME4a LINE L1 5790 6097 -24 23 33 0 0 chr6 131547287 131547317 -50867925 + AT_rich Low_complexity Low_complexity 1 30 0 246 237 0 0 chr6 131547726 131547785 -50867457 - L1MC4 LINE L1 -1339 6703 6645 1601 158 7 50 chr6 131548391 131548689 -50866553 + AluJo SINE Alu 6 290 -22 25 0 0 0 chr6 131548689 131548714 -50866528 + AT_rich Low_complexity Low_complexity 1 25 0 511 221 40 71 chr6 131549447 131549673 -50865569 + L1ME LINE L1 5463 5681 -489 29 28 0 0 chr6 131550430 131550466 -50864776 + AT_rich Low_complexity Low_complexity 1 36 0 756 304 105 99 chr6 131550970 131551590 -50863652 - L3 LINE CR1 -70 1507 892 2216 109 3 0 chr6 131551590 131551884 -50863358 - AluSx SINE Alu -13 299 5 756 304 105 99 chr6 131551884 131552564 -50862678 - L3 LINE CR1 -685 892 199 445 245 170 14 chr6 131552880 131553027 -50862215 - MER5A DNA MER1_type -9 180 11 1630 208 60 65 chr6 131553147 131553651 -50861591 + MLT1D LTR MaLR 5 505 0 537 297 81 58 chr6 131554741 131555101 -50860141 - LTR67 LTR ERVL -3 554 187 2503 146 7 0 chr6 131555997 131556402 -50858840 + L1PA16 LINE L1 5743 6150 -16 21 0 0 0 chr6 131557700 131557721 -50857521 + AT_rich Low_complexity Low_complexity 1 21 0 352 275 22 4 chr6 131559142 131559234 -50856008 - MER5A DNA MER1_type -75 103 18 289 255 19 66 chr6 131560039 131560145 -50855097 - MER94 DNA DNA 0 134 34 1976 113 14 0 chr6 131560246 131560561 -50854681 + AluSp SINE Alu 1 313 0 182 419 22 29 chr6 131560958 131561094 -50854148 - L2 LINE L2 -752 2562 2428 266 303 172 0 chr6 131562054 131562199 -50853043 - MIR3 SINE MIR -7 201 32 226 264 149 11 chr6 131563636 131563723 -50851519 - MIR SINE MIR -13 249 151 1994 123 0 4 chr6 131565265 131565541 -50849701 - AluSx SINE Alu -37 275 1 197 339 142 0 chr6 131565852 131565979 -50849263 + L2 LINE L2 3160 3304 -9 333 188 0 0 chr6 131566053 131566138 -50849104 + G-rich Low_complexity Low_complexity 5 89 0 220 274 20 0 chr6 131566242 131566293 -50848949 + polypurine Low_complexity Low_complexity 3 54 0 185 350 103 17 chr6 131566561 131566678 -50848564 - L2 LINE L2 -6 3266 3140 355 284 31 16 chr6 131566713 131566840 -50848402 + L1M4 LINE L1 5043 5171 -975 242 105 0 0 chr6 131566880 131566918 -50848324 + MLT2B1 LTR ERVL 1 38 -482 1382 167 50 46 chr6 131566918 131567199 -50848043 + MLT2B1 LTR ERVL 239 520 0 2389 215 27 54 chr6 131567222 131567692 -50847550 + L1MEc LINE L1 291 772 -5624 1799 167 3 3 chr6 131567692 131568003 -50847239 + AluJo SINE Alu 1 311 0 2389 215 27 54 chr6 131568003 131568056 -50847186 + L1MEc LINE L1 772 825 -5571 1395 173 128 89 chr6 131568056 131568548 -50846694 - LTR64 LTR ERVK 0 513 3 2389 215 27 54 chr6 131568548 131568689 -50846553 + L1MEc LINE L1 825 941 -5455 1474 255 61 28 chr6 131568690 131568785 -50846457 + L1MEc LINE L1 2120 2210 -4005 2000 85 4 0 chr6 131568785 131569057 -50846185 + L1PA7 LINE L1 5882 6154 0 1474 255 61 28 chr6 131569057 131569092 -50846150 + L1MEc LINE L1 2210 2242 -3973 1525 157 84 0 chr6 131569092 131569354 -50845888 + AluSg SINE Alu 17 300 -10 1474 255 61 28 chr6 131569354 131570026 -50845216 + L1MEc LINE L1 2242 2912 -3303 275 182 0 45 chr6 131570060 131570126 -50845116 - Alu SINE Alu 0 300 238 761 270 22 15 chr6 131570233 131570507 -50844735 + L1MEc LINE L1 3313 3588 -2627 1523 273 63 14 chr6 131570784 131571279 -50843963 + LTR40a LTR ERVL 1 519 0 530 265 45 8 chr6 131571279 131571411 -50843831 + MER5B DNA MER1_type 26 162 -16 180 0 0 0 chr6 131571651 131571671 -50843571 + (A)n Simple_repeat Simple_repeat 1 20 0 20667 154 13 5 chr6 131571736 131574919 -50840323 + HERVL18 LTR ERVL 492 3698 -2349 13804 159 22 2 chr6 131575024 131577151 -50838091 + HERVL18 LTR ERVL 3879 6047 0 978 269 136 6 chr6 131577152 131577468 -50837774 + LTR18A LTR ERVL 1 357 0 1950 180 14 8 chr6 131579284 131579645 -50835597 - MLT1A1 LTR MaLR -2 363 1 26 0 0 0 chr6 131580181 131580207 -50835035 + AT_rich Low_complexity Low_complexity 1 26 0 382 306 41 27 chr6 131580229 131580376 -50834866 - MIR SINE MIR -106 156 8 1380 143 17 4 chr6 131581218 131581456 -50833786 + L1MA4 LINE L1 6056 6296 -4 679 218 60 56 chr6 131581505 131581721 -50833521 + L1MD2 LINE L1 6117 6333 -26 2157 111 0 7 chr6 131582002 131582290 -50832952 + AluSx SINE Alu 13 298 -14 216 312 83 9 chr6 131583659 131583768 -50831474 + L3b LINE CR1 1393 1509 -74 22 0 0 0 chr6 131583864 131583886 -50831356 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 131583942 131583966 -50831276 + AT_rich Low_complexity Low_complexity 1 24 0 513 372 107 25 chr6 131584397 131585277 -50829965 + L2 LINE L2 2148 3095 -177 245 310 140 10 chr6 131585279 131585379 -50829863 + L2 LINE L2 3200 3312 -1 441 308 58 83 chr6 131585470 131585831 -50829411 + HAL1 LINE L1 47 398 -2109 482 70 14 0 chr6 131585930 131586001 -50829241 + (GGAA)n Simple_repeat Simple_repeat 4 75 0 1233 276 101 48 chr6 131586202 131587157 -50828085 + HAL1 LINE L1 805 1809 -698 276 323 16 0 chr6 131587317 131587441 -50827801 + HAL1 LINE L1 2028 2153 -354 375 231 19 0 chr6 131587771 131587875 -50827367 + HAL1 LINE L1 2236 2341 -166 688 159 40 0 chr6 131587885 131588011 -50827231 + MIR SINE MIR 75 205 -57 2626 52 11 6 chr6 131588013 131588360 -50826882 - L1PA4 LINE L1 -2 6153 5805 22194 39 2 0 chr6 131588485 131591565 -50823677 - L1PA4 LINE L1 -1013 5133 2046 6638 182 57 4 chr6 131592164 131594216 -50821026 - L1PA8 LINE L1 -13 6159 4001 208 254 0 53 chr6 131594420 131594534 -50820708 + T-rich Low_complexity Low_complexity 1 108 0 25 0 0 0 chr6 131594637 131594662 -50820580 + AT_rich Low_complexity Low_complexity 1 25 0 1862 161 3 3 chr6 131594743 131595029 -50820213 + AluJo SINE Alu 2 287 -25 2183 119 0 0 chr6 131595288 131595583 -50819659 + AluSg SINE Alu 1 295 -15 316 284 39 8 chr6 131595957 131596084 -50819158 + MIR SINE MIR 107 237 -25 204 252 138 114 chr6 131596627 131596691 -50818551 - MIR SINE MIR -67 141 80 1614 196 11 0 chr6 131596691 131596971 -50818271 + AluJo SINE Alu 2 284 -28 204 252 138 114 chr6 131596971 131597029 -50818213 - MIR SINE MIR -128 80 16 594 255 37 127 chr6 131597689 131598126 -50817116 - L2 LINE L2 -192 3121 2718 389 170 54 45 chr6 131598159 131598271 -50816971 - MER20B DNA MER1_type -385 398 286 24 0 0 0 chr6 131598538 131598562 -50816680 + AT_rich Low_complexity Low_complexity 1 24 0 1747 191 3 38 chr6 131598720 131599086 -50816156 - MLT1B LTR MaLR -37 353 1 312 70 0 0 chr6 131599636 131599679 -50815563 + (CA)n Simple_repeat Simple_repeat 2 44 0 359 340 11 11 chr6 131600357 131600542 -50814700 + L1MC4a LINE L1 5722 5906 -1902 2599 150 21 6 chr6 131600543 131601016 -50814226 + L1MB2 LINE L1 5689 6168 -3 27 0 0 0 chr6 131601572 131601599 -50813643 + AT_rich Low_complexity Low_complexity 1 27 0 617 295 92 24 chr6 131601784 131601991 -50813251 + Zaphod DNA AcHobo 1 221 -3810 334 174 75 65 chr6 131602055 131602348 -50812894 + Zaphod DNA AcHobo 694 989 -3042 660 200 126 5 chr6 131602348 131602538 -50812704 + Zaphod DNA AcHobo 3604 3816 -215 996 143 20 0 chr6 131602595 131602768 -50812474 - FRAM SINE Alu 0 175 1 840 195 11 6 chr6 131602769 131602943 -50812299 + Zaphod DNA AcHobo 3841 4015 -16 2031 122 10 3 chr6 131603422 131603716 -50811526 - AluY SINE Alu -15 296 1 580 237 0 0 chr6 131604644 131604758 -50810484 + MER81 DNA DNA 1 114 0 386 268 0 31 chr6 131605281 131605378 -50809864 - L2 LINE L2 -2 3311 3218 512 366 60 33 chr6 131605546 131606131 -50809111 - L2 LINE L2 0 3272 2653 322 272 18 70 chr6 131606129 131606243 -50808999 - MIR SINE MIR -68 194 87 * 1876 141 20 26 chr6 131606953 131607259 -50807983 + AluSx SINE Alu 1 304 -8 701 254 68 0 chr6 131607339 131607516 -50807726 + MER5A DNA MER1_type 1 189 0 218 281 134 12 chr6 131607550 131607632 -50807610 + MIR SINE MIR 45 136 -72 290 163 0 0 chr6 131607722 131607765 -50807477 + MER5A DNA MER1_type 146 188 -1 633 241 48 0 chr6 131607806 131607951 -50807291 - MER45A DNA AcHobo 0 178 27 607 227 154 14 chr6 131608374 131608594 -50806648 + MIR SINE MIR 6 256 -6 22 99 0 0 chr6 131610241 131610312 -50804930 + GC_rich Low_complexity Low_complexity 1 71 0 247 315 56 9 chr6 131610810 131610918 -50804324 + MIR3 SINE MIR 52 164 -44 217 191 24 0 chr6 131611115 131611157 -50804085 + L2 LINE L2 3214 3256 -16 226 269 0 0 chr6 131611950 131612002 -50803240 + L2 LINE L2 3219 3270 -2 409 330 17 56 chr6 131612042 131612184 -50803058 - MIR3 SINE MIR -13 195 60 1390 108 70 0 chr6 131612184 131612397 -50802845 - MER30 DNA MER1_type -1 229 2 409 330 17 56 chr6 131612397 131612433 -50802809 - MIR3 SINE MIR -148 60 24 2016 125 17 3 chr6 131612802 131613090 -50802152 - AluSx SINE Alu -18 294 3 1846 179 0 3 chr6 131613563 131613876 -50801366 + AluJb SINE Alu 1 312 0 420 260 82 34 chr6 131615230 131615376 -50799866 - L2 LINE L2 0 3313 3161 757 173 8 8 chr6 131615379 131615512 -50799730 + FLAM_A SINE Alu 1 133 0 946 252 89 13 chr6 131615602 131615904 -50799338 - LTR41 LTR ERVL -11 762 438 608 225 183 11 chr6 131615905 131616096 -50799146 + MER58A DNA MER1_type 1 224 0 292 378 0 27 chr6 131616096 131616198 -50799044 - LTR41 LTR ERVL -329 444 346 869 221 143 22 chr6 131616228 131616459 -50798783 - LTR41 LTR ERVL -514 259 1 260 256 225 48 chr6 131616482 131616709 -50798533 - L2 LINE L2 -243 3070 2804 * 511 304 93 37 chr6 131616698 131616968 -50798274 - L2 LINE L2 -644 2670 2386 310 241 139 9 chr6 131617056 131617164 -50798078 - MLT1I LTR MaLR -287 122 1 618 273 245 3 chr6 131617169 131617455 -50797787 - L2 LINE L2 -993 2321 1967 892 252 142 8 chr6 131617455 131617926 -50797316 - L1ME LINE L1 -454 5708 5191 1483 212 51 17 chr6 131618015 131618201 -50797041 - MLT1A2 LTR MaLR 0 374 196 234 0 0 0 chr6 131618201 131618227 -50797015 + (GA)n Simple_repeat Simple_repeat 2 27 0 1483 212 51 17 chr6 131618227 131618394 -50796848 - MLT1A2 LTR MaLR -178 196 9 477 277 185 22 chr6 131618394 131618849 -50796393 - L1ME LINE L1 -1311 4835 4307 312 324 145 31 chr6 131619424 131619782 -50795460 - L2 LINE L2 -1231 2083 1685 229 244 35 47 chr6 131620446 131620532 -50794710 - L1M4 LINE L1 -1531 4615 4531 23 0 0 0 chr6 131620571 131620594 -50794648 + AT_rich Low_complexity Low_complexity 1 23 0 4076 173 58 56 chr6 131620650 131622069 -50793173 - L1MB3 LINE L1 0 6183 4742 313 311 123 28 chr6 131622070 131622395 -50792847 - L1M4 LINE L1 -1785 4361 4006 23 33 0 0 chr6 131623543 131623573 -50791669 + AT_rich Low_complexity Low_complexity 1 30 0 1940 126 41 0 chr6 131624862 131625156 -50790086 - AluSx SINE Alu -6 306 1 601 296 48 29 chr6 131625536 131625742 -50789500 + MIR SINE MIR 32 241 -21 2059 116 0 11 chr6 131625972 131626249 -50788993 + AluSx SINE Alu 2 275 -37 238 338 14 0 chr6 131627442 131627516 -50787726 + MER5B DNA MER1_type 98 172 -6 357 248 9 28 chr6 131628405 131628514 -50786728 - HsTC2 DNA Tc2 -1018 880 774 455 260 113 51 chr6 131628523 131628700 -50786542 - MER5A DNA MER1_type 0 189 2 21 0 0 0 chr6 131628747 131628768 -50786474 + AT_rich Low_complexity Low_complexity 1 21 0 798 164 0 0 chr6 131628883 131629011 -50786231 - FLAM_C SINE Alu -5 128 1 304 216 49 49 chr6 131630809 131630911 -50784331 - L1ME2 LINE L1 -212 5952 5851 1932 174 0 0 chr6 131630940 131631251 -50783991 - AluJb SINE Alu -1 311 1 30 59 0 0 chr6 131631261 131631312 -50783930 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr6 131633786 131633814 -50781428 + AT_rich Low_complexity Low_complexity 1 28 0 339 256 79 55 chr6 131635634 131635798 -50779444 + MIR SINE MIR 32 199 -63 188 266 47 0 chr6 131637418 131637482 -50777760 + L2 LINE L2 3161 3227 -86 24 0 0 0 chr6 131638089 131638113 -50777129 + AT_rich Low_complexity Low_complexity 1 24 0 1015 232 19 5 chr6 131639161 131639372 -50775870 - MER58A DNA MER1_type -2 222 9 359 272 99 25 chr6 131639696 131639858 -50775384 - MER117 DNA MER1_type -9 188 15 * 5496 87 4 0 chr6 131639856 131640625 -50774617 - L1P LINE L1 -2102 4044 3273 21 0 0 0 chr6 131642869 131642890 -50772352 + AT_rich Low_complexity Low_complexity 1 21 0 679 192 61 15 chr6 131644037 131644235 -50771007 - Charlie2 DNA MER1_type -36 2826 2620 2214 103 3 0 chr6 131644254 131644545 -50770697 - AluSx SINE Alu -20 292 1 537 239 139 19 chr6 131644730 131644939 -50770303 + MLT1J2 LTR MaLR 1 234 -216 536 205 217 53 chr6 131645220 131645483 -50769759 - Charlie2 DNA MER1_type -700 2162 1857 * 601 258 83 76 chr6 131645481 131645600 -50769642 - Charlie2 DNA MER1_type -2541 321 204 2193 109 0 7 chr6 131645600 131645903 -50769339 - AluSx SINE Alu -11 301 1 601 258 83 76 chr6 131645903 131645930 -50769312 - Charlie2 DNA MER1_type -2658 204 179 2422 53 3 16 chr6 131645930 131646233 -50769009 + AluY SINE Alu 1 299 -12 601 258 83 76 chr6 131646233 131646399 -50768843 - Charlie2 DNA MER1_type -2683 179 6 423 261 126 47 chr6 131646665 131646983 -50768259 + L1M4 LINE L1 2680 3022 -3124 1177 208 104 60 chr6 131647341 131647415 -50767827 + L1MCa LINE L1 1943 2012 -4414 243 0 0 0 chr6 131647415 131647442 -50767800 + (TG)n Simple_repeat Simple_repeat 2 28 0 1177 208 104 60 chr6 131647442 131648156 -50767086 + L1MCa LINE L1 2012 2794 -3632 2017 198 47 5 chr6 131648156 131648561 -50766681 + MSTA LTR MaLR 1 422 -6 347 83 0 0 chr6 131648567 131648615 -50766627 + MSTA-int LTR MaLR 1 48 -1603 * 2770 162 124 6 chr6 131648606 131649221 -50766021 + L1PA13 LINE L1 1698 2393 -4404 4102 176 97 13 chr6 131649221 131650058 -50765184 + MSTA-int LTR MaLR 745 1651 0 2173 172 38 14 chr6 131650058 131650476 -50764766 + MSTA LTR MaLR 1 428 0 303 247 12 0 chr6 131650476 131650561 -50764681 + L1MCa LINE L1 2792 2877 -3549 * 6040 239 60 24 chr6 131650533 131651291 -50763951 + L1MCa LINE L1 3424 4153 -2273 2233 94 17 3 chr6 131651291 131651588 -50763654 + AluSx SINE Alu 3 303 -9 6040 239 60 24 chr6 131651588 131652731 -50762511 + L1MCa LINE L1 4153 5394 -1032 1529 175 108 0 chr6 131652750 131653075 -50762167 - L1MD2 LINE L1 -355 6004 5645 194 265 0 20 chr6 131654114 131654163 -50761079 + MIR3 SINE MIR 113 160 -48 1689 161 31 0 chr6 131654260 131654520 -50760722 - AluJb SINE Alu -38 274 7 1005 72 14 22 chr6 131656005 131656143 -50759099 + AluY SINE Alu 165 301 -10 22 56 0 0 chr6 131656182 131656218 -50759024 + AT_rich Low_complexity Low_complexity 1 36 0 2250 83 21 0 chr6 131658073 131658363 -50756879 + AluSc SINE Alu 1 296 -13 13896 130 30 27 chr6 131658997 131659974 -50755268 + Tigger1 DNA MER2_type 2 975 -1443 2088 130 10 0 chr6 131659974 131660281 -50754961 + AluSq SINE Alu 1 310 -3 13896 130 30 27 chr6 131660281 131661714 -50753528 + Tigger1 DNA MER2_type 975 2418 0 37 0 0 0 chr6 131661998 131662035 -50753207 + AT_rich Low_complexity Low_complexity 1 37 0 367 211 174 9 chr6 131662918 131663027 -50752215 - L2 LINE L2 -4 3309 3183 716 272 47 92 chr6 131663116 131663454 -50751788 + MER102b DNA MER1_type 8 330 -11 21 0 0 0 chr6 131664483 131664504 -50750738 + AT_rich Low_complexity Low_complexity 1 21 0 969 84 3 3 chr6 131664821 131664964 -50750278 + HERVL-A2 LTR ERVL 1915 2035 -3619 * 3135 75 54 7 chr6 131664954 131665395 -50749847 + HERVL-A2 LTR ERVL 5193 5654 0 267 85 128 0 chr6 131665397 131665444 -50749798 + MLT2A2 LTR ERVL 3 55 -398 3392 58 9 16 chr6 131665447 131665894 -50749348 + MLT2A1 LTR ERVL 1 444 0 287 323 159 55 chr6 131667276 131667695 -50747547 + L2 LINE L2 1825 2199 -1115 1392 200 58 12 chr6 131667695 131668040 -50747202 + MLT1A1 LTR MaLR 4 364 -1 198 103 0 0 chr6 131668040 131668069 -50747173 + (TA)n Simple_repeat Simple_repeat 1 29 0 287 323 159 55 chr6 131668069 131668234 -50747008 + L2 LINE L2 2198 2471 -843 22 35 0 0 chr6 131669957 131669986 -50745256 + AT_rich Low_complexity Low_complexity 1 29 0 440 219 174 19 chr6 131670156 131670311 -50744931 + L1ME1 LINE L1 45 223 -6173 1870 85 21 50 chr6 131670331 131670614 -50744628 - AluSx SINE Alu -37 275 1 1995 261 89 35 chr6 131670669 131671663 -50743579 + L1ME1 LINE L1 541 1610 -4786 2123 20 0 0 chr6 131671663 131671910 -50743332 + L1PA2 LINE L1 5908 6154 -1 1995 261 89 35 chr6 131671910 131672088 -50743154 + L1ME1 LINE L1 1610 1777 -4619 1705 251 45 16 chr6 131672123 131672685 -50742557 + L1ME1 LINE L1 3711 4288 -1927 621 244 89 0 chr6 131672688 131672868 -50742374 + AluJo SINE Alu 110 305 -7 2594 220 107 13 chr6 131672876 131674519 -50740723 + L1ME1 LINE L1 4312 6234 -1 1019 244 113 58 chr6 131674519 131675057 -50740185 + HAL1b LINE L1 158 725 -623 366 205 77 0 chr6 131675059 131675137 -50740105 - MER5A DNA MER1_type -3 186 103 1511 245 120 100 chr6 131675180 131676193 -50739049 + HAL1 LINE L1 3 1040 -1467 1784 125 7 49 chr6 131676193 131676480 -50738762 + AluSx SINE Alu 1 275 -37 1511 245 120 100 chr6 131676480 131676533 -50738709 + HAL1 LINE L1 1040 1090 -1417 1334 138 39 144 chr6 131676535 131676869 -50738373 - AluJb SINE Alu -8 304 6 303 283 136 0 chr6 131676923 131677100 -50738142 + HAL1 LINE L1 1088 1288 -1219 590 220 225 105 chr6 131677164 131677562 -50737680 + HAL1 LINE L1 1490 1839 -668 1993 141 7 7 chr6 131677562 131677860 -50737382 + AluSx SINE Alu 1 298 -14 590 220 225 105 chr6 131677860 131678242 -50737000 + HAL1 LINE L1 1839 2364 -143 302 243 196 45 chr6 131678329 131678486 -50736756 + HAL1b LINE L1 789 921 -427 1112 200 14 18 chr6 131678486 131678706 -50736536 - MER20 DNA MER1_type 0 219 1 302 243 196 45 chr6 131678706 131678885 -50736357 + HAL1b LINE L1 921 1176 -172 1193 110 23 0 chr6 131679607 131679780 -50735462 - AluSg/x SINE Alu -3 307 131 233 0 62 0 chr6 131679780 131679812 -50735430 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1971 113 11 11 chr6 131679813 131680096 -50735146 - AluSx SINE Alu -29 283 1 553 244 41 29 chr6 131680284 131680456 -50734786 + AluJo SINE Alu 116 289 -23 2114 80 4 4 chr6 131683088 131683362 -50731880 + AluSg SINE Alu 19 292 -18 2083 144 0 0 chr6 131684090 131684396 -50730846 + AluSq SINE Alu 1 306 -7 673 164 0 0 chr6 131685265 131685387 -50729855 - AluSg/x SINE Alu -4 308 187 349 120 0 0 chr6 131685396 131685446 -50729796 - AluSp/q SINE Alu -49 254 205 349 171 71 0 chr6 131685431 131685501 -50729741 - AluSg/x SINE Alu -115 187 113 21 0 0 0 chr6 131685505 131685526 -50729716 + AT_rich Low_complexity Low_complexity 1 21 0 640 221 16 0 chr6 131685614 131685741 -50729501 + AluJo/FLAM SINE Alu 2 130 -172 2314 109 0 0 chr6 131685743 131686047 -50729195 + AluSx SINE Alu 1 304 -8 962 190 99 4 chr6 131687204 131687467 -50727775 - MER33 DNA MER1_type 0 324 37 2972 101 10 0 chr6 131689034 131689439 -50725803 - L1P3 LINE L1 -6043 418 10 2437 77 0 0 chr6 131690282 131690581 -50724661 - AluY SINE Alu -12 299 1 2631 214 57 33 chr6 131691293 131691899 -50723343 + L1MC4 LINE L1 7286 7915 -127 195 100 0 0 chr6 131691899 131691929 -50723313 + (TG)n Simple_repeat Simple_repeat 2 31 0 2631 214 57 33 chr6 131691929 131692054 -50723188 + L1MC4 LINE L1 7915 8035 -7 2364 44 7 10 chr6 131692201 131692499 -50722743 - AluY SINE Alu -13 298 2 429 248 12 5 chr6 131692639 131692776 -50722466 - LTR43 LTR ERV1 -207 472 183 2265 99 0 3 chr6 131692784 131693088 -50722154 - AluSg SINE Alu -7 303 1 24 32 0 0 chr6 131693296 131693327 -50721915 + AT_rich Low_complexity Low_complexity 1 31 0 1589 184 103 73 chr6 131693676 131694208 -50721034 - MER34B LTR ERV1 -7 558 11 245 343 56 0 chr6 131694247 131694355 -50720887 + L2 LINE L2 3200 3313 0 207 139 0 0 chr6 131694401 131694437 -50720805 + (A)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr6 131694892 131694914 -50720328 + AT_rich Low_complexity Low_complexity 1 22 0 2772 131 14 0 chr6 131695013 131695441 -50719801 + MER57B LTR ERV1 1 434 0 196 324 134 21 chr6 131695472 131695614 -50719628 + L3b LINE CR1 1283 1440 -143 229 90 104 15 chr6 131696279 131696346 -50718896 + L1PA16 LINE L1 6091 6163 -3 21 36 0 0 chr6 131696944 131696972 -50718270 + AT_rich Low_complexity Low_complexity 1 28 0 1774 236 44 33 chr6 131697069 131697615 -50717627 - L1MC4 LINE L1 -8 8034 7483 1189 202 34 74 chr6 131697617 131698062 -50717180 + MLT1A1 LTR MaLR 1 428 0 1464 219 51 86 chr6 131698062 131698692 -50716550 - L1MC4 LINE L1 -557 7485 6878 1123 176 10 24 chr6 131698692 131698897 -50716345 - AluJb SINE Alu -34 278 77 1376 236 66 3 chr6 131698915 131699263 -50715979 - L1MC4 LINE L1 -1208 6834 6465 1887 137 7 0 chr6 131699462 131699774 -50715468 - AluSq SINE Alu 0 327 14 858 217 17 67 chr6 131700509 131700638 -50714604 - LTR16A LTR ERVL 0 450 337 2185 173 42 10 chr6 131700638 131701048 -50714194 + MSTB LTR MaLR 4 426 0 858 217 17 67 chr6 131701048 131701158 -50714084 - LTR16A LTR ERVL -113 337 223 2514 133 94 8 chr6 131701181 131701773 -50713469 - MER50 LTR ERV1 -23 711 3 379 331 135 0 chr6 131701775 131701938 -50713304 - LTR16A LTR ERVL -259 191 7 402 346 92 25 chr6 131702956 131703271 -50711971 - L1 LINE L1 -3135 3011 2676 1757 171 112 6 chr6 131703386 131703707 -50711535 + MLT1A1 LTR MaLR 1 355 -10 207 360 12 12 chr6 131704517 131704603 -50710639 + MIR3 SINE MIR 78 163 -45 10689 242 64 30 chr6 131704856 131708352 -50706890 + L1M2 LINE L1 9 3673 -3175 2027 163 34 14 chr6 131708352 131708709 -50706533 - THE1B LTR MaLR 0 364 1 10689 242 64 30 chr6 131708709 131710402 -50704840 + L1M2 LINE L1 3673 5307 -1541 1922 169 128 13 chr6 131710938 131711322 -50703920 - MSTA LTR MaLR 0 428 1 1831 121 3 17 chr6 131711322 131711612 -50703630 - MSTA-int LTR MaLR 0 1580 1295 * 2773 181 52 10 chr6 131711596 131712174 -50703068 - MSTA-int LTR MaLR -618 962 391 1269 119 0 11 chr6 131712177 131712362 -50702880 - AluSp SINE Alu 0 313 131 1209 119 16 10 chr6 131712372 131712566 -50702676 - MSTA-int LTR MaLR -1456 195 1 1821 180 125 10 chr6 131712566 131712950 -50702292 - MSTA LTR MaLR 0 428 1 1757 226 19 3 chr6 131713121 131713489 -50701753 - MLT1A2 LTR MaLR 0 374 1 271 121 55 143 chr6 131713671 131713762 -50701480 - MLT1K LTR MaLR -36 552 470 23 0 0 0 chr6 131714897 131714920 -50700322 + AT_rich Low_complexity Low_complexity 1 23 0 3740 107 14 20 chr6 131715084 131715635 -50699607 - LTR14 LTR ERVK 0 548 1 21066 167 55 55 chr6 131715638 131716934 -50698308 - HERVKC4 LTR ERVK -7 5255 3960 2695 23 0 7 chr6 131716934 131717240 -50698002 - AluY SINE Alu -7 304 1 21066 167 55 55 chr6 131717240 131718995 -50696247 - HERVKC4 LTR ERVK -1302 3960 2206 2454 58 3 0 chr6 131718995 131719288 -50695954 - AluY SINE Alu -17 294 1 21066 167 55 55 chr6 131719288 131719675 -50695567 - HERVKC4 LTR ERVK -3056 2206 1820 2326 92 0 3 chr6 131719675 131719970 -50695272 - AluY SINE Alu -17 294 1 21066 167 55 55 chr6 131719970 131721786 -50693456 - HERVKC4 LTR ERVK -3442 1820 1 3597 110 7 24 chr6 131721795 131722333 -50692909 - LTR14 LTR ERVK -19 529 1 526 294 79 61 chr6 131722611 131723040 -50692202 + Charlie8 DNA MER1_type 1 434 -1983 323 279 12 138 chr6 131723084 131723331 -50691911 + L2 LINE L2 2174 2389 -925 487 280 44 67 chr6 131723386 131723663 -50691579 + MLT1I LTR MaLR 39 276 -133 24 60 0 30 chr6 131723674 131723707 -50691535 + AT_rich Low_complexity Low_complexity 1 33 -32 2160 156 7 32 chr6 131723707 131724110 -50691132 - L1PA16 LINE L1 -9 6157 5765 24 60 0 30 chr6 131724110 131724143 -50691099 + AT_rich Low_complexity Low_complexity 33 65 0 798 284 59 35 chr6 131724429 131724852 -50690390 + L1MEd LINE L1 423 855 -5264 189 0 0 0 chr6 131724927 131724948 -50690294 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 26 30 0 0 chr6 131725603 131725636 -50689606 + AT_rich Low_complexity Low_complexity 1 33 0 2126 112 3 0 chr6 131725957 131726252 -50688990 - AluSc SINE Alu -13 296 1 547 281 71 5 chr6 131727354 131727550 -50687692 - L1ME3A LINE L1 0 6170 5962 1246 217 43 43 chr6 131727711 131727814 -50687428 - MER58B DNA MER1_type -2090 330 228 3215 113 42 2 chr6 131727814 131728308 -50686934 + MER75 DNA T2_type 1 514 0 1246 217 43 43 chr6 131728308 131728531 -50686711 - MER58B DNA MER1_type -2191 229 4 231 266 101 30 chr6 131728708 131728907 -50686335 - L2 LINE L2 -220 3093 2881 2983 100 102 22 chr6 131729305 131729767 -50685475 + MER1A DNA MER1_type 31 529 0 245 252 112 112 chr6 131730346 131730560 -50684682 + L2 LINE L2 3090 3303 -10 8864 107 11 27 chr6 131730927 131731638 -50683604 - HSMAR1 DNA Mariner 0 1287 604 2326 87 0 0 chr6 131731638 131731927 -50683315 + AluY SINE Alu 1 289 -22 8864 107 11 27 chr6 131731927 131732514 -50682728 - HSMAR1 DNA Mariner -683 604 9 3711 93 25 69 chr6 131732514 131733107 -50682135 - L1P3 LINE L1 -5887 574 8 2096 172 29 90 chr6 131733118 131733595 -50681647 - L1 LINE L1 -1909 4061 3625 2377 128 3 29 chr6 131733595 131733778 -50681464 + THE1B LTR MaLR 1 170 -194 1795 135 4 0 chr6 131733778 131734037 -50681205 + AluSq SINE Alu 39 298 -15 2377 128 3 29 chr6 131734037 131734227 -50681015 + THE1B LTR MaLR 170 364 0 2096 172 29 90 chr6 131734227 131734337 -50680905 - L1 LINE L1 -2345 3625 3510 834 159 0 16 chr6 131734360 131734542 -50680700 + CT-rich Low_complexity Low_complexity 2 180 0 384 161 11 21 chr6 131734555 131734648 -50680594 + CT-rich Low_complexity Low_complexity 2 93 0 4789 256 50 40 chr6 131734684 131735739 -50679503 - L1 LINE L1 -2447 3523 2479 12819 164 25 19 chr6 131735739 131738142 -50677100 - Tigger1 DNA MER2_type 0 2418 1 4789 256 50 40 chr6 131738142 131738608 -50676634 - L1 LINE L1 -3491 2479 2019 1495 215 41 22 chr6 131738608 131738849 -50676393 - MLT1A2 LTR MaLR 0 374 122 1561 187 60 23 chr6 131738849 131739149 -50676093 + AluJo SINE Alu 1 311 -1 1495 215 41 22 chr6 131739149 131739274 -50675968 - MLT1A2 LTR MaLR -252 122 1 4789 256 50 40 chr6 131739274 131740870 -50674372 - L1 LINE L1 -3951 2019 454 302 298 82 91 chr6 131740954 131741307 -50673935 - L1 LINE L1 -5533 358 9 422 323 76 62 chr6 131741837 131742125 -50673117 + L2 LINE L2 2978 3269 -3 346 232 87 153 chr6 131742134 131742375 -50672867 + MIR SINE MIR 37 261 -1 2505 181 101 9 chr6 131742603 131743386 -50671856 - L1MB3 LINE L1 -3 6180 5161 1355 178 34 4 chr6 131743386 131743663 -50671579 - AluJo SINE Alu 0 323 40 43 35 0 0 chr6 131744373 131744430 -50670812 + AT_rich Low_complexity Low_complexity 1 57 0 336 336 21 7 chr6 131744430 131744573 -50670669 + L1MEc LINE L1 186 330 -6066 286 381 5 14 chr6 131744648 131744866 -50670376 + L1MEc LINE L1 498 713 -5683 29 0 0 0 chr6 131744893 131744922 -50670320 + AT_rich Low_complexity Low_complexity 1 29 0 541 226 0 0 chr6 131744922 131745028 -50670214 - FLAM_A SINE Alu -36 106 1 534 335 75 10 chr6 131745908 131746108 -50669134 + MIR SINE MIR 17 229 -33 1857 148 10 33 chr6 131746175 131746478 -50668764 - AluSx SINE Alu -16 296 1 208 196 9 65 chr6 131746970 131747077 -50668165 + A-rich Low_complexity Low_complexity 6 106 0 285 299 29 63 chr6 131747116 131747290 -50667952 + MLT1J LTR MaLR 19 186 -325 180 0 0 0 chr6 131747395 131747415 -50667827 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 44192 36 3 8 chr6 131747416 131753592 -50661650 - L1PA4 LINE L1 -10 6145 1 2105 130 0 46 chr6 131753595 131753919 -50661323 - AluSq SINE Alu -4 309 1 21 36 0 0 chr6 131754181 131754209 -50661033 + AT_rich Low_complexity Low_complexity 1 28 0 35 24 0 0 chr6 131754593 131754635 -50660607 + AT_rich Low_complexity Low_complexity 1 42 0 4623 130 11 10 chr6 131754895 131755707 -50659535 + L1PA15 LINE L1 5161 5967 -198 1244 134 0 5 chr6 131755696 131755882 -50659360 - L1PA15 LINE L1 -25 6140 5956 * 1169 107 0 6 chr6 131755882 131756047 -50659195 + L1PA15 LINE L1 5996 6162 -3 21 0 0 0 chr6 131756932 131756953 -50658289 + AT_rich Low_complexity Low_complexity 1 21 0 1233 111 136 66 chr6 131757430 131757567 -50657675 - LTR18B LTR ERVL 0 614 488 2466 74 0 7 chr6 131757567 131757877 -50657365 - AluSq SINE Alu -5 308 1 1233 111 136 66 chr6 131757877 131757982 -50657260 - LTR18B LTR ERVL -126 488 355 1024 142 5 88 chr6 131757998 131758203 -50657039 - LTR18B LTR ERVL -426 188 1 202 328 0 84 chr6 131759520 131759639 -50655603 - L3b LINE CR1 -138 1445 1337 183 413 46 0 chr6 131759720 131759829 -50655413 + L2 LINE L2 3156 3269 -3 410 262 55 16 chr6 131759885 131760068 -50655174 - HAL1 LINE L1 -1 2506 2317 360 209 0 0 chr6 131760071 131760162 -50655080 + (TA)n Simple_repeat Simple_repeat 2 92 0 2172 115 0 0 chr6 131760166 131760452 -50654790 - AluSx SINE Alu -24 288 3 2661 265 91 18 chr6 131760559 131761871 -50653371 - HAL1 LINE L1 -295 2212 806 562 242 109 109 chr6 131761884 131762280 -50652962 - HAL1 LINE L1 -1889 618 223 1700 214 107 101 chr6 131762280 131762596 -50652646 + LTR41 LTR ERVL 21 334 -439 1882 132 0 28 chr6 131762596 131762917 -50652325 - AluSx SINE Alu 0 313 1 1700 214 107 101 chr6 131762917 131763311 -50651931 + LTR41 LTR ERVL 334 736 -37 591 51 0 13 chr6 131763510 131763588 -50651654 - MADE1 DNA Mariner 0 80 4 204 40 0 0 chr6 131763718 131763743 -50651499 + (T)n Simple_repeat Simple_repeat 1 25 0 301 280 40 60 chr6 131764750 131764900 -50650342 - MIR SINE MIR -69 193 47 285 393 48 22 chr6 131765371 131765600 -50649642 - L2 LINE L2 -177 3095 2861 2930 271 24 30 chr6 131766130 131766229 -50649013 + ERVL LTR ERVL 2856 2954 -2810 2441 107 16 16 chr6 131766229 131766604 -50648638 + THE1C LTR MaLR 1 375 0 2930 271 24 30 chr6 131766604 131767171 -50648071 + ERVL LTR ERVL 2954 3518 -2246 1939 136 20 7 chr6 131767171 131767465 -50647777 + AluSq SINE Alu 1 298 -15 2930 271 24 30 chr6 131767465 131767637 -50647605 + ERVL LTR ERVL 3518 3690 -2074 1125 270 49 7 chr6 131767652 131768193 -50647049 + MLT2E LTR ERVL 1 616 -12 956 277 77 35 chr6 131768288 131768664 -50646578 - MLT1K LTR MaLR -2 586 195 26 0 0 0 chr6 131768956 131768982 -50646260 + AT_rich Low_complexity Low_complexity 1 26 0 2345 131 3 0 chr6 131769002 131769362 -50645880 - L1PB1 LINE L1 -8 6143 5783 900 74 15 2 chr6 131769362 131769515 -50645727 + L1 LINE L1 5243 5394 -762 27 0 0 0 chr6 131769515 131769542 -50645700 + AT_rich Low_complexity Low_complexity 1 27 0 11383 206 57 8 chr6 131769546 131774599 -50640643 - L1PBa LINE L1 -1253 5609 6 206 143 89 0 chr6 131774761 131774817 -50640425 + A-rich Low_complexity Low_complexity 1 61 0 1143 273 99 32 chr6 131775993 131776425 -50638817 - MLT1K LTR MaLR -2 586 126 288 322 135 51 chr6 131776505 131776687 -50638555 + MIR3 SINE MIR 20 217 -31 31 68 0 0 chr6 131776753 131776812 -50638430 + AT_rich Low_complexity Low_complexity 1 59 0 429 95 0 0 chr6 131776851 131776914 -50638328 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 24 53 0 0 chr6 131777037 131777075 -50638167 + AT_rich Low_complexity Low_complexity 1 38 0 510 144 10 41 chr6 131777130 131777227 -50638015 - FRAM SINE Alu -17 159 66 1106 310 120 9 chr6 131777324 131777766 -50637476 + LTR16C LTR ERVL 1 491 0 21 36 0 0 chr6 131778237 131778265 -50636977 + AT_rich Low_complexity Low_complexity 1 28 0 242 266 13 0 chr6 131778316 131778395 -50636847 + L1ME4a LINE L1 6041 6120 -1 10251 199 85 34 chr6 131778484 131783599 -50631643 + L1PB2 LINE L1 49 4622 -2245 1414 190 118 0 chr6 131783599 131783878 -50631364 + AluJb SINE Alu 1 312 0 10251 199 85 34 chr6 131783878 131786245 -50628997 + L1PB2 LINE L1 4622 6866 -1 1089 232 50 14 chr6 131786238 131786535 -50628707 + L1ME2 LINE L1 5813 6120 -44 * 839 68 0 0 chr6 131786544 131786647 -50628595 + AluY SINE Alu 1 103 -208 2310 60 0 3 chr6 131786713 131786997 -50628245 + AluY SINE Alu 1 283 -28 261 89 0 0 chr6 131787153 131787198 -50628044 + Alu SINE Alu 257 301 0 180 0 0 0 chr6 131787220 131787240 -50628002 + (T)n Simple_repeat Simple_repeat 1 20 0 205 260 60 0 chr6 131787506 131787556 -50627686 - L2 LINE L2 -4 3268 3216 2583 64 0 0 chr6 131788138 131788449 -50626793 + AluY SINE Alu 1 311 0 2628 103 5 11 chr6 131789232 131789609 -50625633 + THE1C LTR MaLR 1 375 0 25 75 0 0 chr6 131790094 131790147 -50625095 + AT_rich Low_complexity Low_complexity 1 53 0 484 244 16 24 chr6 131793272 131793395 -50621847 + L2 LINE L2 3190 3311 -2 22 0 0 0 chr6 131795270 131795292 -50619950 + AT_rich Low_complexity Low_complexity 1 22 0 2752 186 6 4 chr6 131795312 131795796 -50619446 + MER66B LTR ERV1 1 485 -1 282 404 7 14 chr6 131796114 131796255 -50618987 - MIR3 SINE MIR -65 143 4 198 356 17 0 chr6 131796508 131796567 -50618675 + L2 LINE L2 3228 3287 -26 7489 31 32 0 chr6 131797504 131798842 -50616400 - L1PA4 LINE L1 -3 6152 4796 1964 30 0 0 chr6 131798842 131799076 -50616166 + L1PA4 LINE L1 4580 4813 -1333 218 319 148 44 chr6 131799282 131799417 -50615825 - MIR3 SINE MIR -38 170 22 428 303 21 18 chr6 131799568 131799788 -50615454 + L1M1 LINE L1 5621 5847 -297 21 57 0 0 chr6 131800008 131800043 -50615199 + AT_rich Low_complexity Low_complexity 1 35 0 614 274 59 29 chr6 131800772 131800976 -50614266 + MIR SINE MIR 5 214 -48 202 311 27 14 chr6 131801534 131801608 -50613634 - L3b LINE CR1 -85 1498 1424 275 49 24 0 chr6 131801671 131801712 -50613530 + (CA)n Simple_repeat Simple_repeat 2 43 0 916 190 5 46 chr6 131802181 131802376 -50612866 - AluJb SINE Alu -6 306 120 28 86 0 0 chr6 131802610 131802680 -50612562 + AT_rich Low_complexity Low_complexity 1 70 0 448 294 175 0 chr6 131803259 131803402 -50611840 - MER5A DNA MER1_type 0 189 22 1131 86 7 0 chr6 131804293 131804445 -50610797 - MLT2A1 LTR ERVL -291 153 1 44012 77 6 14 chr6 131804445 131804717 -50610525 - HERVL-A1 LTR ERVL 0 5654 5381 2358 82 3 0 chr6 131804717 131805010 -50610232 - AluSc SINE Alu -15 294 1 44012 77 6 14 chr6 131805010 131810436 -50604806 - HERVL-A1 LTR ERVL -273 5381 1 330 107 0 18 chr6 131810436 131810492 -50604750 - MLT2A1 LTR ERVL 0 453 399 2995 69 20 5 chr6 131810532 131810925 -50604317 - MLT2A1 LTR ERVL -45 399 1 2002 261 55 28 chr6 131810929 131811760 -50603482 + L1MEc LINE L1 469 1322 -5074 21 57 0 0 chr6 131811809 131811844 -50603398 + AT_rich Low_complexity Low_complexity 1 35 0 2416 135 33 30 chr6 131811996 131812425 -50602817 + Tigger2a DNA MER2_type 5 434 0 238 293 0 0 chr6 131812456 131812514 -50602728 + CT-rich Low_complexity Low_complexity 4 61 0 1807 117 0 119 chr6 131813125 131813468 -50601774 + AluSx SINE Alu 1 302 0 2015 151 0 7 chr6 131813968 131814273 -50600969 - AluSx SINE Alu -9 303 1 223 214 82 102 chr6 131815213 131815311 -50599931 - MIR3 SINE MIR -109 99 4 1261 252 23 69 chr6 131816472 131816783 -50598459 + MLT1C LTR MaLR 6 289 -178 2353 94 3 0 chr6 131816783 131817091 -50598151 + AluSx SINE Alu 1 309 -3 1261 252 23 69 chr6 131817091 131817259 -50597983 + MLT1C LTR MaLR 289 463 -4 321 363 122 35 chr6 131817446 131817520 -50597722 + L2 LINE L2 178 244 -3070 438 204 73 147 chr6 131817520 131817582 -50597660 - MER45A DNA AcHobo -1403 178 113 231 58 19 39 chr6 131817582 131817634 -50597608 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 438 204 73 147 chr6 131817634 131817706 -50597536 - MER45A DNA AcHobo -1468 113 59 1683 166 0 11 chr6 131817706 131817817 -50597425 + AluJb SINE Alu 12 123 -189 323 0 48 0 chr6 131817817 131817859 -50597383 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1683 166 0 11 chr6 131817859 131818030 -50597212 + AluJb SINE Alu 123 291 -21 438 204 73 147 chr6 131818030 131818085 -50597157 - MER45A DNA AcHobo -1522 59 2 321 363 122 35 chr6 131818085 131818666 -50596576 + L2 LINE L2 244 890 -2424 247 329 14 0 chr6 131819128 131819201 -50596041 - L2 LINE L2 0 3313 3240 31 26 0 0 chr6 131819457 131819495 -50595747 + AT_rich Low_complexity Low_complexity 1 38 0 332 159 159 0 chr6 131819607 131819676 -50595566 + MADE1 DNA Mariner 1 80 0 332 303 64 32 chr6 131819727 131819915 -50595327 + MIR SINE MIR 3 196 -66 311 291 22 50 chr6 131821447 131821629 -50593613 + MIR3 SINE MIR 29 205 -3 2227 172 30 104 chr6 131822729 131823364 -50591878 - L1MB7 LINE L1 -11 6173 5586 26 0 0 0 chr6 131823388 131823414 -50591828 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr6 131823866 131823892 -50591350 + AT_rich Low_complexity Low_complexity 1 26 0 2276 97 10 0 chr6 131824187 131824487 -50590755 + AluSc SINE Alu 1 303 -6 204 125 0 0 chr6 131825291 131825323 -50589919 + (TG)n Simple_repeat Simple_repeat 2 33 0 24 32 0 0 chr6 131825369 131825400 -50589842 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 131825428 131825449 -50589793 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 131825700 131825721 -50589521 + AT_rich Low_complexity Low_complexity 1 21 0 372 372 41 5 chr6 131825788 131825984 -50589258 - L2 LINE L2 -674 2640 2438 2047 217 38 13 chr6 131826047 131826498 -50588744 + MLT1C LTR MaLR 6 467 0 243 279 209 8 chr6 131827356 131827485 -50587757 - MIR SINE MIR -71 191 37 414 269 28 50 chr6 131829246 131829428 -50585814 - L1ME LINE L1 -402 5719 5542 332 301 164 43 chr6 131829557 131829979 -50585263 - L1ME LINE L1 -797 5349 4877 428 351 106 40 chr6 131830318 131830819 -50584423 + L2 LINE L2 200 733 -2581 204 361 125 52 chr6 131831824 131832231 -50583011 - L2 LINE L2 -25 3247 2811 22 0 0 0 chr6 131833733 131833755 -50581487 + AT_rich Low_complexity Low_complexity 1 22 0 453 265 88 44 chr6 131834413 131834662 -50580580 - MIR SINE MIR -2 260 1 361 324 148 23 chr6 131835194 131835410 -50579832 + MIR SINE MIR 9 251 -11 252 277 0 0 chr6 131835498 131835563 -50579679 - L1ME LINE L1 -485 5636 5572 828 167 27 13 chr6 131835994 131836144 -50579098 + AluSg/x SINE Alu 137 288 -24 37 23 0 0 chr6 131836144 131836188 -50579054 + AT_rich Low_complexity Low_complexity 1 44 0 1752 182 0 0 chr6 131836289 131836575 -50578667 + AluJb SINE Alu 1 286 -26 269 0 56 0 chr6 131836576 131836612 -50578630 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 311 358 103 45 chr6 131836844 131837154 -50578088 - L2 LINE L2 -5 3267 2940 198 234 52 78 chr6 131837230 131837307 -50577935 + L2 LINE L2 3198 3272 0 2306 70 0 29 chr6 131837459 131837772 -50577470 + AluY SINE Alu 1 304 -7 27 0 0 0 chr6 131838377 131838404 -50576838 + AT_rich Low_complexity Low_complexity 1 27 0 314 190 51 95 chr6 131838475 131838546 -50576696 - L1ME4a LINE L1 -165 5956 5892 2427 57 14 3 chr6 131838546 131838843 -50576399 - AluSp SINE Alu -13 300 1 314 190 51 95 chr6 131838843 131838908 -50576334 - L1ME4a LINE L1 -229 5892 5826 418 276 172 6 chr6 131838973 131839136 -50576106 + MIR SINE MIR 73 262 0 276 317 19 0 chr6 131839440 131839544 -50575698 - LTR16A LTR ERVL -166 284 179 3091 144 136 89 chr6 131839788 131840007 -50575235 + L1MC3 LINE L1 6885 7092 -693 268 292 0 0 chr6 131840007 131840072 -50575170 + MLT1F1 LTR MaLR 44 108 -459 3091 144 136 89 chr6 131840072 131840629 -50574613 + L1MC3 LINE L1 7092 7764 -21 2616 167 45 27 chr6 131840644 131841196 -50574046 + L1MB2 LINE L1 5603 6164 -7 190 333 43 0 chr6 131842188 131842257 -50572985 - MIR SINE MIR -91 117 46 557 28 0 14 chr6 131844428 131844500 -50570742 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1358 62 6 0 chr6 131844613 131844901 -50570341 + L1PA7 LINE L1 5882 6170 0 1467 65 0 5 chr6 131845292 131845476 -50569766 + AluY SINE Alu 119 301 -10 242 303 67 11 chr6 131845654 131845743 -50569499 - MIR SINE MIR -13 249 156 396 314 127 13 chr6 131846007 131846306 -50568936 + L1 LINE L1 3605 3937 -2209 1078 228 17 4 chr6 131846524 131846757 -50568485 - MIR SINE MIR -25 237 2 545 325 115 63 chr6 131846779 131847780 -50567462 + L1 LINE L1 4184 5236 -910 2337 85 3 0 chr6 131847990 131848284 -50566958 + AluY SINE Alu 1 295 -16 27 0 0 0 chr6 131848286 131848313 -50566929 + AT_rich Low_complexity Low_complexity 1 27 0 348 325 143 17 chr6 131850077 131850314 -50564928 + L3 LINE CR1 1130 1396 -181 343 300 85 35 chr6 131850480 131850680 -50564562 + MIR SINE MIR 41 250 -12 23 0 0 0 chr6 131851319 131851342 -50563900 + AT_rich Low_complexity Low_complexity 1 23 0 188 262 0 0 chr6 131852051 131852093 -50563149 - MIR SINE MIR -69 139 98 486 278 90 67 chr6 131852108 131852221 -50563021 + MER93a LTR ERV1 6 115 -287 1954 143 3 0 chr6 131852221 131852508 -50562734 - AluSx SINE Alu -24 288 1 486 278 90 67 chr6 131852508 131852782 -50562460 + MER93a LTR ERV1 115 402 0 21 0 0 0 chr6 131853493 131853514 -50561728 + AT_rich Low_complexity Low_complexity 1 21 0 180 294 0 39 chr6 131853761 131853812 -50561430 + MIR SINE MIR 44 92 -116 226 162 0 0 chr6 131853904 131853941 -50561301 - tRNA-Gly-GGA tRNA tRNA -37 38 2 618 292 40 31 chr6 131854928 131855154 -50560088 + MIR SINE MIR 20 247 -15 24 67 0 0 chr6 131857200 131857245 -50557997 + AT_rich Low_complexity Low_complexity 1 45 0 1314 242 67 17 chr6 131857571 131857931 -50557311 - MLT2C1 LTR ERVL -19 378 1 880 215 53 35 chr6 131857931 131858159 -50557083 - ERVL-C1 LTR ERVL -2 5762 5531 12798 196 34 18 chr6 131858194 131860749 -50554493 - ERVL-C1 LTR ERVL -289 5475 2880 952 209 22 0 chr6 131860748 131860930 -50554312 - ERVL-C1 LTR ERVL -3338 2426 2241 * 1954 329 87 63 chr6 131860955 131862614 -50552628 - ERVL-C1 LTR ERVL -4057 1707 1 229 213 21 0 chr6 131862694 131862741 -50552501 + (TATG)n Simple_repeat Simple_repeat 4 51 0 306 0 0 0 chr6 131862746 131862780 -50552462 + (TG)n Simple_repeat Simple_repeat 1 34 0 1130 206 82 26 chr6 131862781 131863087 -50552155 - MLT2C1 LTR ERVL -48 349 27 2199 104 10 0 chr6 131864124 131864422 -50550820 + AluSx SINE Alu 1 301 -11 749 165 6 61 chr6 131865412 131865576 -50549666 - AluSp/q SINE Alu -2 311 157 1944 167 5 40 chr6 131865698 131866076 -50549166 + MLT1A1 LTR MaLR 1 365 0 255 197 14 42 chr6 131866076 131866147 -50549095 - L2 LINE L2 -97 3216 3148 26 50 0 0 chr6 131866836 131866876 -50548366 + AT_rich Low_complexity Low_complexity 1 40 0 181 205 26 0 chr6 131867301 131867340 -50547902 + L2 LINE L2 3028 3067 -246 383 244 14 82 chr6 131867448 131867594 -50547648 - L1MA9 LINE L1 0 6291 6157 192 176 0 0 chr6 131867625 131867659 -50547583 + L2 LINE L2 3280 3313 0 30 0 0 0 chr6 131868532 131868562 -50546680 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 131868738 131868766 -50546476 + AT_rich Low_complexity Low_complexity 1 28 0 2870 6 0 0 chr6 131869305 131869616 -50545626 - AluYa5 SINE Alu 0 311 1 386 248 85 46 chr6 131869616 131869769 -50545473 - L2 LINE L2 -7 3306 3148 289 83 0 0 chr6 131870407 131870455 -50544787 - L1PA13 LINE L1 0 6163 6116 4025 178 47 22 chr6 131871971 131873044 -50542198 - L1MB8 LINE L1 -9 6169 5068 2158 115 16 13 chr6 131873080 131873392 -50541850 - AluSp SINE Alu 0 313 1 546 270 22 7 chr6 131873512 131873649 -50541593 - MIR SINE MIR -91 171 33 1751 195 90 19 chr6 131874209 131874630 -50540612 - MLT1C LTR MaLR -16 451 1 1511 170 69 7 chr6 131875187 131875463 -50539779 - AluJo SINE Alu -17 295 3 214 304 38 0 chr6 131876616 131876695 -50538547 + MIR SINE MIR 84 165 -97 * 594 286 173 5 chr6 131876683 131876903 -50538339 - MIR SINE MIR 0 262 6 297 0 0 0 chr6 131877231 131877264 -50537978 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 2209 65 72 0 chr6 131878047 131878337 -50536905 + AluY SINE Alu 1 311 0 746 196 0 14 chr6 131879704 131879847 -50535395 + FLAM_C SINE Alu 1 141 -2 180 369 93 9 chr6 131880247 131880461 -50534781 + L2 LINE L2 2080 2311 -1003 900 266 106 36 chr6 131880676 131881119 -50534123 - MLT1J LTR MaLR -37 474 1 246 32 0 0 chr6 131881265 131881296 -50533946 + (TTG)n Simple_repeat Simple_repeat 2 32 0 236 245 0 0 chr6 131881415 131881464 -50533778 - L2 LINE L2 0 3313 3265 2388 78 0 0 chr6 131881780 131882074 -50533168 + AluSc SINE Alu 1 294 -15 644 183 0 7 chr6 131882442 131882579 -50532663 - MER96B DNA MER1_type? -245 172 37 190 281 0 35 chr6 131883131 131883188 -50532054 + L3 LINE CR1 1521 1575 -2 26 88 0 0 chr6 131883438 131883506 -50531736 + AT_rich Low_complexity Low_complexity 1 68 0 273 227 144 31 chr6 131884467 131884564 -50530678 - L2 LINE L2 -7 3306 3199 435 319 59 40 chr6 131884837 131885160 -50530082 - L2 LINE L2 -429 2885 2557 3671 122 2 19 chr6 131886682 131887208 -50528034 - MER1A DNA MER1_type 0 529 13 184 265 41 0 chr6 131887837 131887886 -50527356 - MER5A DNA MER1_type -28 161 111 252 333 9 46 chr6 131887978 131888086 -50527156 - MER5A DNA MER1_type -25 164 61 335 280 21 11 chr6 131888377 131888470 -50526772 - MIR3 SINE MIR -4 204 111 23 152 0 0 chr6 131888665 131888698 -50526544 + AT_rich Low_complexity Low_complexity 1 33 0 2045 81 41 0 chr6 131888893 131889164 -50526078 - AluY SINE Alu -15 296 15 195 42 0 0 chr6 131889481 131889505 -50525737 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 199 360 116 44 chr6 131889566 131889791 -50525451 - L2 LINE L2 -9 3263 3023 192 301 180 62 chr6 131890150 131890699 -50524543 - L2 LINE L2 -337 2977 2364 274 314 70 27 chr6 131890774 131890974 -50524268 - MIR SINE MIR -48 214 4 3866 141 14 7 chr6 131891073 131891700 -50523542 - MER39B LTR ERV1 -25 619 1 683 369 62 0 chr6 131891701 131892026 -50523216 + L2 LINE L2 2583 2927 -387 217 227 0 0 chr6 131892259 131892303 -50522939 + L2 LINE L2 3270 3313 0 246 77 26 0 chr6 131945216 131945255 -50469987 - MER4B LTR ERV1 0 610 571 2392 254 40 8 chr6 131945358 131946444 -50468798 + L1P3 LINE L1 1225 2348 -4113 24 0 0 0 chr6 131946603 131946627 -50468615 + AT_rich Low_complexity Low_complexity 1 24 0 1494 206 3 31 chr6 131947323 131947678 -50467564 + MER46B DNA MER2_type 2 221 -15 333 166 64 13 chr6 131947688 131947845 -50467397 + (TA)n Simple_repeat Simple_repeat 2 166 0 7391 67 4 1 chr6 131948115 131949155 -50466087 + L1P LINE L1 4235 5277 -869 353 303 121 26 chr6 131950048 131950279 -50464963 - MARNA DNA Mariner -328 258 6 26 30 0 0 chr6 131950566 131950599 -50464643 + AT_rich Low_complexity Low_complexity 1 33 0 597 233 59 25 chr6 131952218 131952484 -50462758 + AluJb SINE Alu 46 312 0 2136 127 0 7 chr6 131952490 131952790 -50462452 + AluSx SINE Alu 1 298 -14 231 139 70 0 chr6 131953047 131953090 -50462152 + MER77 LTR ERV1 45 90 -515 2019 97 0 0 chr6 131953230 131953497 -50461745 + AluY SINE Alu 29 295 -16 4109 109 8 2 chr6 131953831 131954466 -50460776 + Harlequin LTR ERV1 5238 5876 -1020 5822 227 52 16 chr6 131954572 131956037 -50459205 + L1M3de LINE L1 717 2137 -4516 27 0 0 0 chr6 131956196 131956223 -50459019 + AT_rich Low_complexity Low_complexity 1 27 0 1037 236 35 61 chr6 131956234 131956701 -50458541 + L1ME2 LINE L1 4490 4943 -1203 2335 101 0 3 chr6 131956701 131956998 -50458244 + AluSq SINE Alu 1 296 -17 1037 236 35 61 chr6 131956998 131957051 -50458191 + L1ME2 LINE L1 4943 4996 -1150 2103 114 0 13 chr6 131957056 131957354 -50457888 + AluSx SINE Alu 4 297 -15 491 45 15 0 chr6 131957354 131957420 -50457822 + (GA)n Simple_repeat Simple_repeat 1 67 0 266 282 20 78 chr6 131957420 131957764 -50457478 + L1ME2 LINE L1 4981 5304 -842 215 258 108 21 chr6 131957892 131957985 -50457257 - MIR SINE MIR -150 112 12 635 277 38 45 chr6 131958875 131959167 -50456075 + L2 LINE L2 1326 1615 -1699 194 250 58 0 chr6 131959166 131959218 -50456024 + L2 LINE L2 1165 1219 -2095 * 303 286 122 92 chr6 131960252 131960696 -50454546 - L1M2 LINE L1 -5893 956 500 199 206 309 0 chr6 131961042 131961110 -50454132 + L2 LINE L2 3187 3275 -38 464 257 49 22 chr6 131961112 131961295 -50453947 + MER5A DNA MER1_type 2 189 0 3655 111 0 4 chr6 131961681 131962239 -50453003 - L1P3 LINE L1 -4886 1575 1020 * 7698 149 2 4 chr6 131962230 131963596 -50451646 + L1P LINE L1 1259 2622 -3524 1368 250 78 53 chr6 131963702 131963965 -50451277 + L1ME2 LINE L1 5290 5545 -619 1180 153 0 0 chr6 131963965 131964155 -50451087 + L1PA16 LINE L1 5968 6157 -9 1368 250 78 53 chr6 131964155 131964535 -50450707 + L1ME2 LINE L1 5545 5949 -215 2607 122 0 0 chr6 131964574 131964934 -50450308 - THE1B LTR MaLR -4 360 1 30 45 0 0 chr6 131965113 131965157 -50450085 + AT_rich Low_complexity Low_complexity 1 44 0 1619 216 123 75 chr6 131965728 131966247 -50448995 + MER4D LTR ERV1 1 579 -324 261 0 0 0 chr6 131966247 131966276 -50448966 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1619 216 123 75 chr6 131966276 131966618 -50448624 + MER4D LTR ERV1 579 903 0 237 355 105 0 chr6 131966662 131966786 -50448456 - L2 LINE L2 -840 2474 2338 263 67 44 0 chr6 131967842 131967887 -50447355 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1844 147 3 18 chr6 131967890 131968176 -50447066 - AluJb SINE Alu -30 282 1 817 142 14 7 chr6 131969080 131969228 -50446014 - L1P3 LINE L1 -4886 1575 1427 1072 62 0 0 chr6 131969496 131969626 -50445616 + AluSg SINE Alu 1 130 -180 207 0 0 0 chr6 131969633 131969656 -50445586 + (A)n Simple_repeat Simple_repeat 1 23 0 2162 218 47 40 chr6 131969728 131970330 -50444912 + MLT1E3 LTR MaLR 1 606 -18 28 48 0 0 chr6 131970436 131970478 -50444764 + AT_rich Low_complexity Low_complexity 1 42 0 2235 106 0 0 chr6 131970640 131970943 -50444299 + AluSx SINE Alu 1 303 -9 619 233 23 11 chr6 131971064 131971240 -50444002 + MER5B DNA MER1_type 1 178 0 754 221 0 7 chr6 131971319 131971459 -50443783 - FAM SINE Alu -29 156 18 616 193 7 7 chr6 131971702 131971847 -50443395 + GA-rich Low_complexity Low_complexity 3 147 0 9236 171 1 2 chr6 131972272 131973861 -50441381 - HERVE LTR ERV1 -1775 6038 4451 1377 71 0 0 chr6 131973861 131974030 -50441212 + 7SLRNA srpRNA srpRNA 83 251 -69 9662 214 3 3 chr6 131974030 131975946 -50439296 - HERVE LTR ERV1 -4507 3306 1392 913 195 0 0 chr6 131976235 131976409 -50438833 - MER50 LTR ERV1 0 734 558 1260 167 191 16 chr6 131976409 131976666 -50438576 + AluJb SINE Alu 1 302 0 913 195 0 0 chr6 131976666 131976681 -50438561 - MER50 LTR ERV1 -175 559 545 203 30 0 61 chr6 131976682 131976715 -50438527 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 3038 152 12 37 chr6 131976717 131976826 -50438416 - MER50 LTR ERV1 -156 578 468 2135 106 3 34 chr6 131976826 131977146 -50438096 - AluSg SINE Alu 0 310 1 3038 152 12 37 chr6 131977146 131977629 -50437613 - MER50 LTR ERV1 -266 468 1 252 296 219 32 chr6 131977961 131978299 -50436943 - L2 LINE L2 -65 3248 2848 471 248 41 28 chr6 131978596 131978741 -50436501 - L2 LINE L2 -8 3305 3159 1563 108 36 5 chr6 131978761 131978984 -50436258 - MER30 DNA MER1_type 0 230 1 24 0 0 0 chr6 131979204 131979228 -50436014 + AT_rich Low_complexity Low_complexity 1 24 0 1193 206 50 87 chr6 131979799 131980303 -50434939 - MER31A LTR ERV1 0 485 1 1256 78 17 0 chr6 131980694 131980874 -50434368 - L1MA2 LINE L1 0 6304 6122 2264 88 0 0 chr6 131981437 131981731 -50433511 + AluY SINE Alu 1 294 -17 276 307 94 30 chr6 131982397 131982726 -50432516 + L1ME3A LINE L1 5616 5965 -205 431 325 102 10 chr6 131982938 131983233 -50432009 - L2 LINE L2 -609 2705 2384 1876 107 0 0 chr6 131983473 131983717 -50431525 + AluSq SINE Alu 2 245 -68 21 0 0 0 chr6 131983819 131983840 -50431402 + AT_rich Low_complexity Low_complexity 1 21 0 750 252 29 25 chr6 131983842 131984084 -50431158 - AluJo SINE Alu -30 282 40 297 291 7 20 chr6 131984199 131984350 -50430892 - L1M4 LINE L1 -1779 4367 4219 291 268 103 71 chr6 131984353 131984380 -50430862 - L1M4 LINE L1 -1978 4168 4143 1977 124 26 54 chr6 131984380 131984766 -50430476 + THE1C LTR MaLR 1 375 0 291 268 103 71 chr6 131984766 131985022 -50430220 - L1M4 LINE L1 -2003 4143 3869 2635 43 0 0 chr6 131985022 131985327 -50429915 - AluY SINE Alu -4 307 3 291 268 103 71 chr6 131985327 131985393 -50429849 - L1M4 LINE L1 -2277 3869 3807 1274 295 20 20 chr6 131985412 131985816 -50429426 + MLT1H1 LTR MaLR 139 542 -13 592 244 29 42 chr6 131985832 131986070 -50429172 + L1M4 LINE L1 4754 4988 -1158 728 214 8 0 chr6 131986153 131986284 -50428958 - FLAM_C SINE Alu -1 132 1 457 256 77 43 chr6 131986440 131986674 -50428568 - L1M4 LINE L1 -1498 5234 4993 1441 223 4 7 chr6 131986719 131986993 -50428249 - AluJo SINE Alu -39 273 1 2285 83 0 10 chr6 131986996 131987309 -50427933 - AluY SINE Alu -1 310 1 2109 177 68 12 chr6 131987318 131987814 -50427428 - L1MA7 LINE L1 -2 6289 5766 1183 194 18 18 chr6 131987789 131988068 -50427174 - L1M4 LINE L1 -1850 4882 4604 * 1918 158 8 8 chr6 131988170 131988525 -50426717 + THE1C LTR MaLR 20 374 -1 1444 240 64 32 chr6 131988525 131989610 -50425632 - L1M4 LINE L1 -3572 3160 2038 8465 131 35 44 chr6 131989718 131991249 -50423993 + THE1-int LTR MaLR 16 1533 -47 2176 270 31 16 chr6 131991350 131992241 -50423001 - L1M4 LINE L1 -5466 1187 11 259 78 0 59 chr6 131992389 131992440 -50422802 - L1MA6 LINE L1 0 6300 6253 * 302 261 43 9 chr6 131992438 131992553 -50422689 - L1M3d LINE L1 -5772 119 1 1058 191 42 21 chr6 131992751 131992987 -50422255 + MLT1D LTR MaLR 265 505 0 353 310 84 39 chr6 131993057 131993412 -50421830 + MLT1I LTR MaLR 3 373 -36 21 0 0 0 chr6 131993611 131993632 -50421610 + AT_rich Low_complexity Low_complexity 1 21 0 439 122 0 0 chr6 131994060 131994134 -50421108 - L1MA3 LINE L1 0 6305 6232 294 236 36 64 chr6 131995670 131995810 -50419432 - HAL1 LINE L1 -108 2399 2264 467 263 116 11 chr6 131995845 131996035 -50419207 - L2 LINE L2 0 3313 3104 343 217 14 0 chr6 131996278 131996347 -50418895 - MLT1L LTR MaLR -416 199 130 376 280 47 28 chr6 131996445 131996656 -50418586 - HAL1 LINE L1 -775 1732 1518 445 249 47 68 chr6 131996697 131997062 -50418180 - HAL1 LINE L1 -1160 1347 991 376 331 78 6 chr6 131998038 131998204 -50417038 + MIR SINE MIR 20 197 -65 1848 139 50 4 chr6 131998542 131998822 -50416420 - AluSx SINE Alu -19 293 1 186 133 0 0 chr6 131999243 131999273 -50415969 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 132000519 132000541 -50414701 + AT_rich Low_complexity Low_complexity 1 22 0 344 356 83 0 chr6 132000570 132000702 -50414540 - MIR SINE MIR -116 146 4 882 187 263 45 chr6 132000802 132001272 -50413970 - MER39 LTR ERV1 -57 650 1 2195 247 113 2 chr6 132001320 132001859 -50413383 + MLT2F LTR ERVL 14 612 -51 249 33 0 0 chr6 132001898 132001928 -50413314 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 284 213 0 0 chr6 132001951 132002012 -50413230 - Charlie2 DNA MER1_type -195 2667 2607 2120 129 0 10 chr6 132002019 132002322 -50412920 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr6 132002515 132002543 -50412699 + AT_rich Low_complexity Low_complexity 1 28 0 3819 158 20 43 chr6 132002543 132003330 -50411912 - L1MA4 LINE L1 -9 6291 5523 180 0 0 0 chr6 132003374 132003394 -50411848 + (TA)n Simple_repeat Simple_repeat 1 20 0 211 150 67 0 chr6 132003431 132003491 -50411751 + (TA)n Simple_repeat Simple_repeat 1 64 0 325 92 59 33 chr6 132003503 132003655 -50411587 + (TA)n Simple_repeat Simple_repeat 1 156 0 631 125 32 0 chr6 132003666 132003953 -50411289 + (TA)n Simple_repeat Simple_repeat 1 296 0 343 236 27 20 chr6 132003964 132004112 -50411130 + (TA)n Simple_repeat Simple_repeat 1 149 0 219 185 33 0 chr6 132004134 132004226 -50411016 + (TA)n Simple_repeat Simple_repeat 2 96 0 28 0 0 0 chr6 132004233 132004261 -50410981 + AT_rich Low_complexity Low_complexity 1 28 0 43 35 0 0 chr6 132004286 132004343 -50410899 + AT_rich Low_complexity Low_complexity 1 57 0 546 167 0 0 chr6 132004364 132004448 -50410794 - AluJ SINE Alu -94 218 135 21 0 0 0 chr6 132004765 132004786 -50410456 + AT_rich Low_complexity Low_complexity 1 21 0 258 240 10 125 chr6 132005367 132005430 -50409812 + L2 LINE L2 3225 3275 -38 1194 206 60 92 chr6 132005430 132005833 -50409409 - MLT1B LTR MaLR 0 390 1 258 240 10 125 chr6 132005833 132005865 -50409377 + L2 LINE L2 3275 3309 -4 313 329 88 6 chr6 132006281 132006451 -50408791 + MIR SINE MIR 58 241 -21 274 235 29 15 chr6 132006504 132006572 -50408670 - L2 LINE L2 -56 3257 3189 223 171 0 0 chr6 132006579 132006620 -50408622 + (TG)n Simple_repeat Simple_repeat 2 42 0 282 286 33 11 chr6 132007571 132007662 -50407580 - L2 LINE L2 0 3272 3180 441 144 128 48 chr6 132008007 132008132 -50407110 + MIR SINE MIR 123 257 -5 25 0 0 0 chr6 132008132 132008157 -50407085 + AT_rich Low_complexity Low_complexity 1 25 0 352 241 12 0 chr6 132008524 132008607 -50406635 - MER96B DNA MER1_type? -13 404 321 25 51 0 0 chr6 132008608 132008647 -50406595 + AT_rich Low_complexity Low_complexity 1 39 0 845 148 15 0 chr6 132008664 132008799 -50406443 - AluJ SINE Alu -171 141 5 308 315 117 0 chr6 132010086 132010197 -50405045 - L2 LINE L2 0 3313 3190 307 330 31 23 chr6 132010463 132010614 -50404628 - MIR3 SINE MIR -47 161 7 2171 65 48 14 chr6 132010711 132011003 -50404239 - AluY SINE Alu -9 302 1 231 125 0 0 chr6 132011824 132011864 -50403378 + (CA)n Simple_repeat Simple_repeat 1 40 0 2019 211 81 22 chr6 132012085 132012667 -50402575 + L1MC4 LINE L1 7171 7786 -256 215 172 0 35 chr6 132012680 132012738 -50402504 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 201 154 0 0 chr6 132012800 132012839 -50402403 + A-rich Low_complexity Low_complexity 2 40 0 24 0 0 0 chr6 132014104 132014128 -50401114 + AT_rich Low_complexity Low_complexity 1 24 0 2143 145 0 20 chr6 132014822 132015174 -50400068 + MER46B DNA MER2_type 2 221 -15 447 127 64 13 chr6 132015184 132015341 -50399901 + (TA)n Simple_repeat Simple_repeat 1 165 0 324 133 67 0 chr6 132015478 132015538 -50399704 - MER46B DNA MER2_type 0 236 173 622 88 0 0 chr6 132015566 132015646 -50399596 - MER46B DNA MER2_type -205 31 77 534 171 0 0 chr6 132016103 132016191 -50399051 - MER46B DNA MER2_type -269 92 5 25 51 0 0 chr6 132016357 132016396 -50398846 + AT_rich Low_complexity Low_complexity 1 39 0 603 229 69 55 chr6 132016692 132016910 -50398332 - L1ME3A LINE L1 -8 6162 5942 14466 128 11 11 chr6 132018246 132021385 -50393857 + L1PA7 LINE L1 3019 6151 -3 524 279 41 46 chr6 132022338 132022535 -50392707 + MIR SINE MIR 66 261 -1 185 361 33 77 chr6 132022705 132022888 -50392354 - MIR3 SINE MIR -28 180 6 421 241 60 0 chr6 132023232 132023348 -50391894 + MIR SINE MIR 114 236 -26 468 276 128 0 chr6 132023596 132023752 -50391490 + MER5B DNA MER1_type 2 177 -1 1596 155 25 22 chr6 132023774 132024051 -50391191 + LTR9 LTR ERV1 335 612 0 815 181 28 117 chr6 132024443 132024692 -50390550 - MLT1H LTR MaLR -218 331 105 2524 225 90 78 chr6 132024720 132025533 -50389709 + MER21B LTR ERV1 17 839 -24 404 237 60 65 chr6 132025646 132025861 -50389381 - Charlie2 DNA MER1_type -608 2254 2041 901 232 5 5 chr6 132025905 132026095 -50389147 - AluJo SINE Alu -108 204 15 561 156 204 18 chr6 132026102 132026269 -50388973 - Charlie2 DNA MER1_type -809 2053 1856 451 305 16 64 chr6 132026243 132026492 -50388750 - Charlie2 DNA MER1_type -2437 345 109 * 2456 175 67 25 chr6 132026810 132027335 -50387907 + MER44D DNA MER2_type 2 603 -2 2310 143 53 29 chr6 132027555 132027938 -50387304 - Tigger2a DNA MER2_type -2274 434 38 2187 91 0 11 chr6 132027938 132028255 -50386987 + AluSq SINE Alu 3 316 0 2310 143 53 29 chr6 132028255 132028283 -50386959 - Tigger2a DNA MER2_type -2670 38 12 2335 91 7 0 chr6 132028631 132028938 -50386304 + AluSp SINE Alu 1 309 -4 2905 119 19 0 chr6 132029777 132030197 -50385045 + MSTA LTR MaLR 1 428 0 993 159 16 48 chr6 132030197 132030386 -50384856 + MER5A DNA MER1_type 7 189 0 990 237 37 0 chr6 132030395 132030610 -50384632 - MER58A DNA MER1_type -1 223 1 207 89 22 44 chr6 132030818 132030863 -50384379 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 722 202 125 0 chr6 132030975 132031143 -50384099 - MER5A DNA MER1_type 0 189 1 333 307 52 42 chr6 132031157 132031349 -50383893 + L2 LINE L2 2380 2573 -741 2131 130 3 0 chr6 132031466 132031773 -50383469 - AluSx SINE Alu -2 310 3 719 233 45 63 chr6 132032177 132032400 -50382842 + MER20 DNA MER1_type 1 219 0 2364 178 46 63 chr6 132032559 132032706 -50382536 - MLT2B2 LTR ERVL 0 515 367 1802 233 19 74 chr6 132032706 132033286 -50381956 + MLT2B3 LTR ERVL 3 550 -4 2364 178 46 63 chr6 132033286 132033660 -50381582 - MLT2B2 LTR ERVL -148 367 3 2068 147 111 8 chr6 132033826 132034214 -50381028 + MSTA LTR MaLR 1 428 0 183 159 23 23 chr6 132034247 132034291 -50380951 - L2 LINE L2 -1 3312 3269 1520 132 4 0 chr6 132035083 132035310 -50379932 + MER57B LTR ERV1 1 228 -206 2439 75 7 0 chr6 132035453 132035761 -50379481 - AluY SINE Alu -1 310 1 181 167 111 74 chr6 132035969 132036023 -50379219 + L3 LINE CR1 612 667 -910 284 313 46 46 chr6 132036057 132036188 -50379054 + MIR SINE MIR 16 146 -62 226 295 16 0 chr6 132036182 132036243 -50378999 - L2 LINE L2 -10 3303 3242 * 617 118 18 2 chr6 132036407 132036635 -50378607 - AluJb SINE Alu -13 299 16 420 263 151 78 chr6 132036717 132036949 -50378293 + MIR SINE MIR 14 262 0 604 232 237 24 chr6 132036985 132037196 -50378046 - MIR SINE MIR -6 256 1 469 285 58 29 chr6 132037854 132038026 -50377216 + MIR SINE MIR 72 248 -14 2163 112 0 7 chr6 132038085 132038390 -50376852 + AluSc SINE Alu 1 303 -6 2235 112 0 3 chr6 132038918 132039213 -50376029 - AluSx SINE Alu -18 294 1 702 266 78 53 chr6 132040081 132040325 -50374917 - MIR SINE MIR 0 262 13 487 236 71 21 chr6 132041430 132041570 -50373672 + MER58A DNA MER1_type 1 147 0 355 283 67 17 chr6 132041601 132041747 -50373495 - MIR3 SINE MIR -49 159 8 343 328 72 6 chr6 132042248 132042428 -50372814 + MIR SINE MIR 59 250 -12 302 315 69 8 chr6 132042988 132043118 -50372124 + MIR3 SINE MIR 31 168 -40 841 196 0 35 chr6 132043601 132043774 -50371468 - AluJb SINE Alu -10 302 136 22 56 0 0 chr6 132043908 132043944 -50371298 + AT_rich Low_complexity Low_complexity 1 36 0 1893 158 0 0 chr6 132044375 132044691 -50370551 - AluSx SINE Alu 0 316 1 2313 111 0 0 chr6 132045836 132046142 -50369100 - AluSq SINE Alu -7 306 1 423 281 197 24 chr6 132047875 132047957 -50367285 - L1MC5 LINE L1 -41 8001 7935 1782 97 108 0 chr6 132047957 132048225 -50367017 - AluSc SINE Alu -12 297 1 423 281 197 24 chr6 132048225 132048496 -50366746 - L1MC5 LINE L1 -107 7935 7604 623 288 0 0 chr6 132049335 132049488 -50365754 + MIR SINE MIR 100 252 -10 1708 154 14 38 chr6 132049499 132049791 -50365451 - AluJo SINE Alu -21 291 7 2373 73 0 3 chr6 132049823 132050123 -50365119 + AluY SINE Alu 11 309 -2 206 304 0 0 chr6 132050505 132050561 -50364681 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 2001 121 0 62 chr6 132050680 132051002 -50364240 - AluSx SINE Alu -10 302 1 30 0 0 0 chr6 132052309 132052339 -50362903 + AT_rich Low_complexity Low_complexity 1 30 0 1413 97 23 9 chr6 132052339 132052556 -50362686 - L1PA10 LINE L1 -11 6157 5938 247 133 0 214 chr6 132052605 132052703 -50362539 - L1ME1 LINE L1 -235 5931 5855 1947 155 3 0 chr6 132052714 132053010 -50362232 - AluSx SINE Alu -13 299 3 629 174 0 13 chr6 132053015 132053170 -50362072 - L1ME1 LINE L1 -984 5162 5010 1265 257 48 30 chr6 132053208 132053667 -50361575 + L1ME1 LINE L1 5695 6161 -5 701 178 0 15 chr6 132053804 132053939 -50361303 - FLAM_C SINE Alu 0 143 11 2100 218 44 24 chr6 132054491 132055189 -50360053 - L1ME1 LINE L1 -1201 4945 4234 304 297 115 27 chr6 132055417 132055565 -50359677 + MIR SINE MIR 53 213 -49 917 224 47 30 chr6 132056000 132056352 -50358890 + MSTD LTR MaLR 1 396 0 1654 194 58 9 chr6 132056632 132056978 -50358264 - MLT1A1 LTR MaLR -2 363 1 23 0 0 0 chr6 132057475 132057498 -50357744 + AT_rich Low_complexity Low_complexity 1 23 0 328 210 45 150 chr6 132057601 132057801 -50357441 + MSTD LTR MaLR 1 179 -217 1369 202 31 25 chr6 132057816 132058138 -50357104 + MSTD LTR MaLR 73 396 0 3760 256 53 36 chr6 132058140 132058692 -50356550 + MSTD-int LTR MaLR 2 543 -1192 3136 94 25 7 chr6 132058692 132059137 -50356105 - MLT2A2 LTR ERVL 0 453 1 3760 256 53 36 chr6 132059137 132059830 -50355412 + MSTD-int LTR MaLR 543 1268 -467 473 292 16 131 chr6 132060394 132060658 -50354584 - L3 LINE CR1 -4 1573 1280 199 0 65 0 chr6 132060658 132060689 -50354553 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 7702 20 0 0 chr6 132060689 132061701 -50353541 - L1PA3 LINE L1 -10 6145 5137 473 292 16 131 chr6 132061701 132061808 -50353434 - L3 LINE CR1 -295 1282 1244 2057 201 72 27 chr6 132062657 132063140 -50352102 + MLT1D LTR MaLR 1 505 0 6531 74 5 16 chr6 132063198 132064559 -50350683 - L1PA8 LINE L1 0 6172 4837 6788 119 3 5 chr6 132064659 132065780 -50349462 - L1P LINE L1 -1025 5121 4004 575 274 47 113 chr6 132065897 132066470 -50348772 - LTR67 LTR ERVL -17 540 6 319 354 80 11 chr6 132066665 132066840 -50348402 - MIR SINE MIR -10 252 66 372 293 55 12 chr6 132066944 132067108 -50348134 + L2 LINE L2 2290 2460 -854 488 351 46 15 chr6 132067135 132067394 -50347848 + L2 LINE L2 3047 3313 0 295 337 210 23 chr6 132067388 132067821 -50347421 + L3 LINE CR1 810 1323 -254 * 292 358 173 26 chr6 132068405 132068983 -50346259 + L2 LINE L2 178 840 -2474 287 358 90 38 chr6 132069018 132069487 -50345755 - LTR67 LTR ERVL -2 555 63 527 240 33 8 chr6 132069628 132069749 -50345493 + MER5A DNA MER1_type 66 189 0 219 338 38 53 chr6 132069630 132069763 -50345479 - MER5A DNA MER1_type -56 133 3 * 3106 101 84 69 chr6 132070310 132070907 -50344335 + MER4B LTR ERV1 1 606 -4 730 220 0 0 chr6 132072180 132072312 -50342930 + FLAM_A SINE Alu 2 133 0 1912 159 3 20 chr6 132072353 132072654 -50342588 - AluSx SINE Alu -16 296 1 2070 90 65 0 chr6 132073416 132073694 -50341548 + AluSq SINE Alu 3 298 -15 22 35 0 0 chr6 132075527 132075556 -50339686 + AT_rich Low_complexity Low_complexity 1 29 0 716 230 62 35 chr6 132075574 132075831 -50339411 + MLT1C LTR MaLR 202 465 -2 338 251 47 68 chr6 132075912 132075989 -50339253 + L1ME4a LINE L1 5935 6012 -109 1681 158 0 35 chr6 132075989 132076300 -50338942 + AluJb SINE Alu 1 300 -12 338 251 47 68 chr6 132076300 132076413 -50338829 + L1ME4a LINE L1 6012 6121 0 228 75 38 38 chr6 132076732 132076785 -50338457 + GA-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr6 132077151 132077172 -50338070 + AT_rich Low_complexity Low_complexity 1 21 0 1835 154 151 3 chr6 132078879 132079237 -50336005 - LTR57 LTR ERVL 0 411 1 487 304 54 0 chr6 132079485 132079653 -50335589 - MER117 DNA MER1_type -11 186 10 413 277 0 17 chr6 132079870 132079989 -50335253 + L2 LINE L2 2235 2351 -963 1526 241 33 157 chr6 132079993 132080721 -50334521 + L1MEc LINE L1 39 856 -5540 702 123 92 8 chr6 132080721 132080851 -50334391 - LTR9B LTR ERV1 -416 228 88 7231 56 18 31 chr6 132080851 132082392 -50332850 + SVA Other Other 25 1386 0 1526 241 33 157 chr6 132082392 132082466 -50332776 + L1MEc LINE L1 855 937 -5459 2202 112 0 14 chr6 132082466 132082760 -50332482 + AluSx SINE Alu 1 290 -22 1526 241 33 157 chr6 132082760 132083375 -50331867 + L1MEc LINE L1 937 1395 -5001 319 122 0 0 chr6 132083377 132083426 -50331816 + MER4D LTR ERV1 754 802 -70 275 224 13 0 chr6 132083427 132083503 -50331739 + (TA)n Simple_repeat Simple_repeat 1 77 0 752 122 53 8 chr6 132083620 132083751 -50331491 - LTR57 LTR ERVL -1 410 274 843 285 23 58 chr6 132083751 132084186 -50331056 + L1MEc LINE L1 1398 1817 -4579 966 302 65 20 chr6 132084188 132084589 -50330653 + L2 LINE L2 2338 2756 -558 3544 47 2 7 chr6 132084591 132085041 -50330201 - LTR7 LTR ERV1 -2 448 1 2366 74 48 13 chr6 132085041 132085418 -50329824 - HERVH LTR ERV1 0 7713 7324 1313 115 23 14 chr6 132085418 132085636 -50329606 - HERVH LTR ERV1 -1894 5819 5600 4070 140 9 1 chr6 132085637 132086294 -50328948 - HERVH LTR ERV1 -2564 5149 4488 3088 118 6 4 chr6 132086296 132086798 -50328444 - HERVH LTR ERV1 -3720 3993 3491 847 137 7 0 chr6 132086791 132086937 -50328305 - HERVH LTR ERV1 -4427 3286 3140 * 14123 91 22 17 chr6 132086916 132089135 -50326107 - HERVH LTR ERV1 -4718 2995 766 2240 251 88 19 chr6 132089492 132090313 -50324929 + Zaphod DNA AcHobo 111 987 -3044 987 232 50 24 chr6 132090316 132090657 -50324585 + Zaphod DNA AcHobo 3596 3945 -86 482 263 18 0 chr6 132091183 132091297 -50323945 + MIR SINE MIR 103 218 -44 210 277 0 15 chr6 132091829 132091894 -50323348 + CT-rich Low_complexity Low_complexity 3 66 0 349 275 22 0 chr6 132092641 132092732 -50322510 + MER94 DNA DNA 21 113 -21 2213 126 231 40 chr6 132093591 132094116 -50321126 - MER51A LTR ERV1 -9 625 1 22 35 0 0 chr6 132094153 132094182 -50321060 + AT_rich Low_complexity Low_complexity 1 29 0 443 288 109 22 chr6 132094268 132094497 -50320745 + L2 LINE L2 1374 1622 -1692 2401 294 140 63 chr6 132094653 132095450 -50319792 + L2 LINE L2 490 1224 -2090 2340 69 16 13 chr6 132095450 132095754 -50319488 - AluY SINE Alu -6 305 1 2401 294 140 63 chr6 132095754 132095802 -50319440 + L2 LINE L2 1224 1267 -2047 1926 202 38 76 chr6 132095802 132096331 -50318911 - LTR22 LTR ERVK 0 509 1 2401 294 140 63 chr6 132096331 132097333 -50317909 + L2 LINE L2 1267 2480 -834 1103 262 81 49 chr6 132097780 132098103 -50317139 + Charlie7 DNA MER1_type 14 325 -2287 1748 156 4 8 chr6 132098103 132098366 -50316876 - AluSx SINE Alu -11 301 40 1103 262 81 49 chr6 132098366 132098730 -50316512 + Charlie7 DNA MER1_type 325 723 -1889 385 229 82 27 chr6 132098725 132098908 -50316334 + Charlie7 DNA MER1_type 2420 2612 0 * 705 267 92 17 chr6 132099517 132099757 -50315485 - MIR SINE MIR 0 262 5 614 227 17 22 chr6 132099805 132099837 -50315405 - L1ME2 LINE L1 0 6334 6303 1904 103 70 0 chr6 132099837 132100110 -50315132 + AluSg SINE Alu 1 292 -18 614 227 17 22 chr6 132100110 132100257 -50314985 - L1ME2 LINE L1 -31 6303 6003 594 245 66 28 chr6 132100270 132100482 -50314760 - L1MEc LINE L1 -3726 2489 2270 281 217 14 63 chr6 132100490 132100633 -50314609 - L1MEc LINE L1 -4175 2221 2086 5416 68 0 0 chr6 132101877 132102583 -50312659 + L1P LINE L1 3479 4184 -1962 5466 221 27 12 chr6 132102685 132104089 -50311153 - L1 LINE L1 -2148 3998 2574 1109 204 39 9 chr6 132104089 132104320 -50310922 + THE1C LTR MaLR 14 251 -124 949 305 86 38 chr6 132104449 132105262 -50309980 + L1ME LINE L1 4182 5087 -1075 723 161 0 29 chr6 132105262 132105399 -50309843 + FLAM_C SINE Alu 1 133 0 949 305 86 38 chr6 132105399 132106015 -50309227 + L1ME LINE L1 5087 5672 -490 23 33 0 0 chr6 132107327 132107357 -50307885 + AT_rich Low_complexity Low_complexity 1 30 0 24 85 0 0 chr6 132109136 132109195 -50306047 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr6 132109659 132109683 -50305559 + AT_rich Low_complexity Low_complexity 1 24 0 192 384 80 59 chr6 132111051 132111390 -50303852 - L2 LINE L2 -17 3255 2910 1635 165 8 4 chr6 132111604 132111871 -50303371 - AluSx SINE Alu -44 268 1 3525 119 6 0 chr6 132112164 132112668 -50302574 + MER84 LTR ERV1 1 507 0 2118 127 7 0 chr6 132113232 132113539 -50301703 + AluSx SINE Alu 1 309 -3 6191 157 43 12 chr6 132113774 132114840 -50300402 + L1MA4 LINE L1 4105 5136 -1164 186 71 0 0 chr6 132114840 132114868 -50300374 + (CAA)n Simple_repeat Simple_repeat 3 30 0 6191 157 43 12 chr6 132114868 132114981 -50300261 + L1MA4 LINE L1 5136 5244 -1056 266 0 29 0 chr6 132114981 132115015 -50300227 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6191 157 43 12 chr6 132115015 132115872 -50299370 + L1MA4 LINE L1 5244 6198 -102 3117 114 82 6 chr6 132117450 132117960 -50297282 - L1PA11 LINE L1 -1 7611 7063 10630 156 35 3 chr6 132117962 132118278 -50296964 - L1PA11 LINE L1 -2118 5466 5161 312 27 0 0 chr6 132118278 132118315 -50296927 + (TTG)n Simple_repeat Simple_repeat 3 39 0 10630 156 35 3 chr6 132118315 132119924 -50295318 - L1PA11 LINE L1 -2423 5161 3481 2685 250 46 26 chr6 132120024 132120740 -50294502 - L1PA11 LINE L1 -6850 731 2 210 310 44 44 chr6 132122316 132122429 -50292813 - MIR SINE MIR -133 129 17 2577 14 0 0 chr6 132123684 132124129 -50291113 - L1PA2 LINE L1 -602 5553 5109 5141 26 2 2 chr6 132124129 132124733 -50290509 + L1PA2 LINE L1 5547 6152 -3 66 14 0 0 chr6 132124793 132124866 -50290376 + AT_rich Low_complexity Low_complexity 1 73 0 336 87 0 43 chr6 132125290 132125359 -50289883 + (TA)n Simple_repeat Simple_repeat 2 67 0 2055 120 0 16 chr6 132225632 132225948 -50189294 + AluSx SINE Alu 1 311 -1 599 346 14 0 chr6 132226182 132226390 -50188852 + MIR SINE MIR 4 214 -48 21 36 0 0 chr6 132226434 132226462 -50188780 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr6 132226547 132226589 -50188653 + AT_rich Low_complexity Low_complexity 1 42 0 1780 139 17 7 chr6 132226827 132227121 -50188121 - AluJb SINE Alu -14 298 2 1752 158 7 0 chr6 132228459 132228750 -50186492 + AluJo SINE Alu 1 293 -19 1082 165 12 85 chr6 132229080 132229328 -50185914 - MER46A DNA MER2_type -1 235 6 1201 117 17 0 chr6 132229921 132230101 -50185141 + MER41E LTR ERV1 32 214 -298 2085 111 7 3 chr6 132230103 132230410 -50184832 + AluSp SINE Alu 1 308 -5 184 340 187 7 chr6 132230766 132230916 -50184326 + MIR SINE MIR 52 228 -34 5436 26 0 0 chr6 132231666 132232285 -50182957 + L1PA4 LINE L1 5537 6155 0 2682 192 8 8 chr6 132232285 132232817 -50182425 + L1M3 LINE L1 5275 5806 -374 239 265 36 12 chr6 132233431 132233514 -50181728 + L1ME3A LINE L1 6046 6130 -40 351 291 93 13 chr6 132233553 132233704 -50181538 + L2 LINE L2 2698 2860 -454 2466 229 54 75 chr6 132235652 132235883 -50179359 - Tigger6a DNA MER2_type -523 1074 840 2242 70 3 0 chr6 132235883 132236169 -50179073 + AluY SINE Alu 2 288 -23 2466 229 54 75 chr6 132236169 132236566 -50178676 - Tigger6a DNA MER2_type -757 840 466 1303 37 6 6 chr6 132236566 132236729 -50178513 - L1PA5 LINE L1 0 6154 5992 2466 229 54 75 chr6 132236729 132236933 -50178309 - Tigger6a DNA MER2_type -1131 466 259 1108 75 34 0 chr6 132236925 132237071 -50178171 + Tigger1 DNA MER2_type 909 1059 -1359 * 3339 171 36 19 chr6 132237171 132237769 -50177473 - L1MC/D LINE L1 -509 5824 5193 1916 140 3 7 chr6 132237769 132238076 -50177166 - AluSx SINE Alu -6 306 1 3339 171 36 19 chr6 132238076 132238530 -50176712 - L1MC/D LINE L1 -1140 5193 4749 446 91 0 15 chr6 132238630 132238696 -50176546 + MSTA LTR MaLR 364 428 0 * 1556 200 18 32 chr6 132238696 132239030 -50176212 - MLT1A1 LTR MaLR -36 329 1 207 0 0 0 chr6 132241415 132241438 -50173804 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 8281 134 11 7 chr6 132242802 132243283 -50171959 + Tigger1 DNA MER2_type 1138 1616 -802 1371 200 3 39 chr6 132243283 132243593 -50171649 + AluJo SINE Alu 1 299 -13 8281 134 11 7 chr6 132243593 132244387 -50170855 + Tigger1 DNA MER2_type 1616 2418 0 426 212 0 0 chr6 132244392 132244477 -50170765 - Tigger6a DNA MER2_type -976 107 23 418 214 117 52 chr6 132248721 132248875 -50166367 + MIR SINE MIR 30 193 -69 1276 163 90 8 chr6 132249287 132249532 -50165710 + AluJo SINE Alu 17 281 -31 22 0 0 0 chr6 132249532 132249554 -50165688 + AT_rich Low_complexity Low_complexity 1 22 0 302 282 63 42 chr6 132251422 132251564 -50163678 - MIR SINE MIR -95 167 23 574 185 8 15 chr6 132251855 132251985 -50163257 - FLAM_C SINE Alu -4 129 1 194 233 117 17 chr6 132252955 132253015 -50162227 - L2 LINE L2 -1 3312 3247 283 253 16 71 chr6 132253491 132253673 -50161569 - L1MC5 LINE L1 -317 7644 7473 183 80 0 0 chr6 132253705 132253730 -50161512 + (TCC)n Simple_repeat Simple_repeat 1 25 0 652 248 182 31 chr6 132253764 132254215 -50161027 - L1MC5 LINE L1 -519 7442 6924 1504 136 21 4 chr6 132254353 132254596 -50160646 + Tigger2 DNA MER2_type 2462 2708 -10 339 302 7 7 chr6 132255215 132255354 -50159888 + (TG)n Simple_repeat Simple_repeat 2 140 0 3262 82 16 18 chr6 132256997 132257446 -50157796 + MER51A LTR ERV1 1 448 -186 26 0 0 0 chr6 132258554 132258580 -50156662 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr6 132260724 132260749 -50154493 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 132262588 132262611 -50152631 + AT_rich Low_complexity Low_complexity 1 23 0 189 24 0 73 chr6 132263273 132263314 -50151928 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 187 226 16 65 chr6 132263408 132263470 -50151772 + L2 LINE L2 3255 3313 0 12701 142 41 54 chr6 132263476 132265925 -50149317 + Tigger1 DNA MER2_type 1 2416 -2 227 145 0 60 chr6 132266598 132266681 -50148561 + (TAA)n Simple_repeat Simple_repeat 2 79 0 475 40 110 13 chr6 132266990 132267224 -50148018 + (TA)n Simple_repeat Simple_repeat 1 256 0 1941 83 24 0 chr6 132267276 132267530 -50147712 + AluY SINE Alu 38 297 -14 26 50 0 0 chr6 132269713 132269753 -50145489 + AT_rich Low_complexity Low_complexity 1 40 0 186 211 53 116 chr6 132269938 132270033 -50145209 - MIR SINE MIR -67 141 53 22 35 0 0 chr6 132270862 132270891 -50144351 + AT_rich Low_complexity Low_complexity 1 29 0 911 110 0 0 chr6 132270902 132271020 -50144222 + AluSg/x SINE Alu 174 291 -21 1856 215 46 29 chr6 132271273 132271729 -50143513 + MLT1C LTR MaLR 1 464 -3 5385 205 42 70 chr6 132271731 132271970 -50143272 + MLT1C-int LTR MaLR 2 246 -1125 825 256 42 87 chr6 132271970 132272349 -50142893 - MLT1A1 LTR MaLR 0 365 4 5385 205 42 70 chr6 132272349 132273519 -50141723 + MLT1C-int LTR MaLR 246 1371 0 1924 183 39 25 chr6 132273519 132273951 -50141291 + MLT1C LTR MaLR 1 438 -29 291 192 0 0 chr6 132273951 132274003 -50141239 + MLT1C LTR MaLR 416 467 0 25 0 0 0 chr6 132274553 132274578 -50140664 + AT_rich Low_complexity Low_complexity 1 25 0 226 100 0 0 chr6 132274713 132274743 -50140499 + Alu SINE Alu 136 165 -138 23 78 0 0 chr6 132275084 132275135 -50140107 + AT_rich Low_complexity Low_complexity 1 51 0 616 235 133 10 chr6 132275215 132275411 -50139831 - MER58A DNA MER1_type -4 220 1 181 344 170 31 chr6 132275458 132275752 -50139490 + L2 LINE L2 1692 2026 -1288 1216 277 42 23 chr6 132275834 132276267 -50138975 + L1MEc LINE L1 37 477 -5919 839 265 40 7 chr6 132276286 132276558 -50138684 - L1M4 LINE L1 -1394 4752 4472 216 182 0 0 chr6 132276580 132276624 -50138618 + T-rich Low_complexity Low_complexity 2 45 0 853 180 46 141 chr6 132277843 132278126 -50137116 + MLT1B LTR MaLR 3 229 -161 787 59 0 51 chr6 132279137 132279255 -50135987 + L1PA4 LINE L1 6041 6152 -3 7723 182 16 13 chr6 132279284 132281876 -50133366 + L1PB1 LINE L1 3566 6151 0 656 292 105 0 chr6 132282000 132282027 -50133215 + MER5A DNA MER1_type 1 24 -165 198 0 0 0 chr6 132282027 132282049 -50133193 + (CAG)n Simple_repeat Simple_repeat 2 23 0 656 292 105 0 chr6 132282049 132282192 -50133050 + MER5A DNA MER1_type 24 189 0 272 240 73 7 chr6 132282570 132282667 -50132575 + MER5A DNA MER1_type 17 189 0 22 80 0 0 chr6 132282928 132282978 -50132264 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr6 132283124 132283161 -50132081 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr6 132283236 132283262 -50131980 + AT_rich Low_complexity Low_complexity 1 26 0 2311 196 38 52 chr6 132283305 132284208 -50131034 + L1MA4 LINE L1 4863 5703 -597 198 0 0 0 chr6 132284208 132284230 -50131012 + (TG)n Simple_repeat Simple_repeat 2 23 0 2311 196 38 52 chr6 132284230 132284633 -50130609 + L1MA4 LINE L1 5703 6110 -190 1677 183 51 6 chr6 132284633 132284945 -50130297 + MER66B LTR ERV1 1 326 -160 8257 189 18 48 chr6 132284952 132286066 -50129176 + MER66-int LTR ERV1 2704 3850 -2826 1838 177 7 0 chr6 132286066 132286354 -50128888 + AluSx SINE Alu 1 290 -22 8257 189 18 48 chr6 132286354 132286474 -50128768 + MER66-int LTR ERV1 3850 3972 -2704 2229 88 0 3 chr6 132286474 132286768 -50128474 + AluY SINE Alu 1 293 -18 8257 189 18 48 chr6 132286768 132287298 -50127944 + MER66-int LTR ERV1 3972 4415 -2261 954 275 79 15 chr6 132287303 132287660 -50127582 - LOR1-int LTR ERV1 -5 6753 6395 13099 135 16 29 chr6 132287679 132289598 -50125644 + MER66B-int LTR ERV1 4608 6405 -271 1938 144 20 52 chr6 132289598 132289944 -50125298 - MER1B DNA MER1_type -2 335 1 13099 135 16 29 chr6 132289944 132290210 -50125032 + MER66B-int LTR ERV1 6405 6673 -3 2104 185 53 32 chr6 132290217 132290692 -50124550 + MER66B LTR ERV1 1 485 -1 838 193 0 0 chr6 132290693 132290880 -50124362 + L1MA7 LINE L1 6097 6283 -8 1391 176 5 5 chr6 132290880 132291101 -50124141 + AluSx SINE Alu 8 228 -84 27 29 0 0 chr6 132291262 132291296 -50123946 + AT_rich Low_complexity Low_complexity 1 34 0 28 29 0 0 chr6 132291814 132291849 -50123393 + AT_rich Low_complexity Low_complexity 1 35 0 268 306 136 15 chr6 132293057 132293263 -50121979 + L2 LINE L2 2256 2486 -828 257 288 45 63 chr6 132295585 132295696 -50119546 - L2 LINE L2 -6 3307 3199 480 111 0 0 chr6 132296331 132296403 -50118839 + (TA)n Simple_repeat Simple_repeat 1 72 0 201 167 56 0 chr6 132296654 132296708 -50118534 + (TA)n Simple_repeat Simple_repeat 2 58 0 350 303 197 0 chr6 132297369 132297511 -50117731 - MER5A DNA MER1_type -7 182 13 2381 75 0 0 chr6 132298359 132298652 -50116590 - AluSq SINE Alu -20 293 1 212 0 36 0 chr6 132299033 132299061 -50116181 + (TAA)n Simple_repeat Simple_repeat 2 30 0 730 215 76 6 chr6 132299485 132299657 -50115585 - MER5A DNA MER1_type 0 189 6 939 305 94 34 chr6 132299769 132300215 -50115027 + L2 LINE L2 193 665 -2649 502 251 0 80 chr6 132300235 132300422 -50114820 - MER5B DNA MER1_type -6 172 1 373 363 77 21 chr6 132300422 132300758 -50114484 + L2 LINE L2 697 1051 -2263 1727 221 44 24 chr6 132300787 132301240 -50114002 - MLT1C LTR MaLR 0 467 6 525 327 163 19 chr6 132301264 132301879 -50113363 + L2 LINE L2 1144 1846 -1468 479 285 74 55 chr6 132302145 132302900 -50112342 - L1ME1 LINE L1 -237 5929 5149 413 294 55 31 chr6 132303015 132303270 -50111972 - L1ME1 LINE L1 -1119 5027 4767 273 194 32 0 chr6 132304508 132304570 -50110672 - MER103 DNA DNA -7 159 96 2083 136 48 20 chr6 132305011 132305365 -50109877 + THE1B LTR MaLR 1 364 0 883 108 22 0 chr6 132306550 132306689 -50108553 + AluSc SINE Alu 166 307 -2 203 315 14 27 chr6 132308344 132308417 -50106825 - L2 LINE L2 -1 3271 3200 501 245 0 0 chr6 132309309 132309411 -50105831 - MER5A DNA MER1_type -84 105 4 243 88 0 0 chr6 132309796 132309830 -50105412 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1488 200 36 4 chr6 132310180 132310343 -50104899 - AluJo SINE Alu -23 289 112 423 0 0 0 chr6 132310343 132310390 -50104852 + (TG)n Simple_repeat Simple_repeat 1 47 0 1488 200 36 4 chr6 132310390 132310501 -50104741 - AluJo SINE Alu -200 112 6 262 250 45 11 chr6 132311690 132311778 -50103464 - L1MD2 LINE L1 -14 6345 6255 297 0 0 0 chr6 132313846 132313879 -50101363 + (TC)n Simple_repeat Simple_repeat 1 33 0 34 65 0 0 chr6 132314237 132314299 -50100943 + AT_rich Low_complexity Low_complexity 1 62 0 251 260 52 21 chr6 132315428 132315524 -50099718 + L1ME LINE L1 5753 5851 -311 202 185 37 0 chr6 132315535 132315589 -50099653 + A-rich Low_complexity Low_complexity 3 58 0 2275 85 13 3 chr6 132317035 132317342 -50097900 + AluY SINE Alu 1 310 -1 2469 226 65 4 chr6 132318342 132318864 -50096378 + REP3 LTR ERV 9 562 0 1633 232 43 25 chr6 132319077 132319565 -50095677 - Charlie1b DNA MER1_type -16 507 11 22 56 0 0 chr6 132323782 132323818 -50091424 + AT_rich Low_complexity Low_complexity 1 36 0 2068 124 0 7 chr6 132329888 132330195 -50085047 - AluSg SINE Alu -5 305 1 270 206 0 0 chr6 132332047 132332110 -50083132 + (TA)n Simple_repeat Simple_repeat 2 64 0 22 35 0 0 chr6 132332147 132332176 -50083066 + AT_rich Low_complexity Low_complexity 1 29 0 196 333 82 29 chr6 132333292 132333499 -50081743 - L2 LINE L2 -816 2498 2281 2246 97 0 3 chr6 132333542 132333851 -50081391 - AluSc SINE Alu -1 308 1 1178 218 124 42 chr6 132333995 132334453 -50080789 + MER65C-int LTR ERV1 3377 3792 -1144 271 206 0 73 chr6 132334464 132334532 -50080710 + MER65C-int LTR ERV1 5200 5262 -1069 1413 274 41 9 chr6 132334623 132335146 -50080096 + MER65C-int LTR ERV1 3619 4173 -698 423 327 39 39 chr6 132335231 132335586 -50079656 + MER65C-int LTR ERV1 4369 4723 -148 1884 195 74 18 chr6 132335719 132336154 -50079088 + MER65C LTR ERV1 1 459 -2 246 336 62 0 chr6 132336356 132336469 -50078773 - L2 LINE L2 -1313 2001 1882 314 322 57 53 chr6 132336763 132337064 -50078178 + L2 LINE L2 1748 2049 -1265 3865 139 16 19 chr6 132337159 132337806 -50077436 - L1PA16 LINE L1 -9 6157 5513 247 353 26 17 chr6 132338734 132338850 -50076392 - MIR SINE MIR -101 161 45 14840 168 25 12 chr6 132338920 132340346 -50074896 + Tigger2 DNA MER2_type 1 1483 -1235 1855 157 38 22 chr6 132340346 132340715 -50074527 - THE1C LTR MaLR 0 375 1 14840 168 25 12 chr6 132340715 132341969 -50073273 + Tigger2 DNA MER2_type 1483 2718 0 2163 199 18 25 chr6 132342346 132342954 -50072288 - L1PA13 LINE L1 -4753 1708 1084 6029 110 10 1 chr6 132342954 132344312 -50070930 + L1PA12 LINE L1 4779 6163 -5 22 35 0 0 chr6 132344674 132344703 -50070539 + AT_rich Low_complexity Low_complexity 1 29 0 228 163 41 0 chr6 132345295 132345344 -50069898 - MER116 DNA Mariner 0 80 30 23 0 0 0 chr6 132346111 132346134 -50069108 + AT_rich Low_complexity Low_complexity 1 23 0 27 62 0 0 chr6 132346273 132346321 -50068921 + AT_rich Low_complexity Low_complexity 1 48 0 372 296 42 35 chr6 132346974 132347116 -50068126 + L2 LINE L2 3171 3313 0 409 292 35 0 chr6 132347649 132347762 -50067480 - MIR SINE MIR -90 172 56 351 260 142 8 chr6 132348337 132348464 -50066778 + MIR SINE MIR 71 214 -48 189 147 0 0 chr6 132348759 132348793 -50066449 + (TA)n Simple_repeat Simple_repeat 1 34 0 27 29 0 0 chr6 132349494 132349528 -50065714 + AT_rich Low_complexity Low_complexity 1 34 0 371 299 49 18 chr6 132349603 132349767 -50065475 + L2 LINE L2 3144 3312 -1 401 286 107 24 chr6 132349776 132349944 -50065298 - MIR SINE MIR -76 186 5 362 323 208 0 chr6 132350394 132350586 -50064656 + MIR SINE MIR 8 239 -23 23 33 0 0 chr6 132350662 132350692 -50064550 + AT_rich Low_complexity Low_complexity 1 30 0 182 114 0 29 chr6 132350801 132350836 -50064406 + (CTA)n Simple_repeat Simple_repeat 3 36 0 2127 96 11 0 chr6 132351913 132352238 -50063004 - AluY SINE Alu 0 328 1 247 324 57 19 chr6 132352253 132352358 -50062884 + L2 LINE L2 3148 3256 -16 207 179 0 0 chr6 132352675 132352714 -50062528 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr6 132352717 132352740 -50062502 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 132353599 132353620 -50061622 + AT_rich Low_complexity Low_complexity 1 21 0 725 189 8 0 chr6 132353634 132353761 -50061481 + FLAM_A SINE Alu 1 128 -5 309 182 0 0 chr6 132353709 132353764 -50061478 + FLAM_C SINE Alu 78 161 0 220 69 0 0 chr6 132353764 132353793 -50061449 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 185 189 75 19 chr6 132354520 132354573 -50060669 + MIR SINE MIR 89 144 -64 319 339 36 18 chr6 132355527 132355692 -50059550 + L2 LINE L2 2241 2408 -906 278 313 114 37 chr6 132356490 132357114 -50058128 - L1M4 LINE L1 -1311 4835 4164 244 264 213 40 chr6 132357471 132357645 -50057597 + MLT1J1 LTR MaLR 74 277 -169 261 326 43 58 chr6 132358377 132358515 -50056727 + MER5A DNA MER1_type 47 182 -7 26 30 0 0 chr6 132359441 132359474 -50055768 + AT_rich Low_complexity Low_complexity 1 33 0 432 311 89 21 chr6 132360590 132360780 -50054462 + MIR3 SINE MIR 4 206 -2 191 339 36 0 chr6 132360880 132360936 -50054306 + MER5A DNA MER1_type 49 106 -83 185 358 185 0 chr6 132365643 132365805 -50049437 + MIR SINE MIR 49 240 -22 23 33 0 0 chr6 132365973 132366003 -50049239 + AT_rich Low_complexity Low_complexity 1 30 0 239 171 66 13 chr6 132366191 132366267 -50048975 + (TA)n Simple_repeat Simple_repeat 1 80 0 204 295 39 26 chr6 132366585 132366663 -50048579 + L2 LINE L2 3220 3298 -15 25 65 0 0 chr6 132366953 132366999 -50048243 + AT_rich Low_complexity Low_complexity 1 46 0 406 230 241 23 chr6 132367343 132367517 -50047725 - MIR SINE MIR 0 262 51 904 288 54 30 chr6 132367743 132368170 -50047072 + MLT1H1 LTR MaLR 107 543 -12 2039 95 61 0 chr6 132368399 132368694 -50046548 - AluSq SINE Alu 0 313 1 207 0 0 0 chr6 132368706 132368729 -50046513 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 325 380 34 6 chr6 132368731 132368910 -50046332 - L2 LINE L2 -845 2469 2286 31 0 0 0 chr6 132370420 132370451 -50044791 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr6 132370884 132370915 -50044327 + AT_rich Low_complexity Low_complexity 1 31 0 424 262 101 13 chr6 132371977 132372126 -50043116 - MIR SINE MIR -97 165 4 183 292 0 0 chr6 132372284 132372332 -50042910 + L2 LINE L2 3266 3313 0 796 48 9 0 chr6 132373037 132373142 -50042100 + L1PA3 LINE L1 6048 6153 -2 373 218 23 0 chr6 132373142 132373223 -50042019 - L1MC2 LINE L1 -5 6339 6251 1401 207 41 20 chr6 132373223 132373578 -50041664 + MLT1A1 LTR MaLR 1 399 -10 4739 169 39 1 chr6 132373578 132374435 -50040807 - L1MC1 LINE L1 -88 6245 5357 1885 247 8 34 chr6 132374437 132375025 -50040217 - L1MC1 LINE L1 -999 5147 4575 1622 141 42 58 chr6 132375126 132375439 -50039803 - MER1B DNA MER1_type -31 308 1 220 245 138 32 chr6 132375728 132375822 -50039420 + L2 LINE L2 3169 3272 0 2212 105 3 10 chr6 132376445 132376751 -50038491 + AluSx SINE Alu 1 304 -8 895 202 97 112 chr6 132376900 132377289 -50037953 + MER57A LTR ERV1 13 403 0 196 338 89 56 chr6 132377480 132377693 -50037549 - L2 LINE L2 -669 2645 2426 21 36 0 0 chr6 132378013 132378041 -50037201 + AT_rich Low_complexity Low_complexity 1 28 0 1756 146 42 3 chr6 132379235 132379522 -50035720 - AluSx SINE Alu -9 303 6 39 68 0 0 chr6 132381284 132381358 -50033884 + AT_rich Low_complexity Low_complexity 1 74 0 263 246 18 0 chr6 132381572 132381629 -50033613 - MLT1L LTR MaLR -75 540 483 537 286 21 70 chr6 132382730 132382971 -50032271 + MIR SINE MIR 18 246 -16 2302 97 0 0 chr6 132383178 132383478 -50031764 + AluSq SINE Alu 1 300 -13 360 289 66 7 chr6 132383692 132383844 -50031398 - MER103 DNA DNA -5 161 1 299 323 63 8 chr6 132384127 132384312 -50030930 + MIR SINE MIR 2 241 -21 234 0 0 0 chr6 132384473 132384499 -50030743 + (CA)n Simple_repeat Simple_repeat 2 27 0 185 291 18 0 chr6 132385766 132385821 -50029421 + L2 LINE L2 3258 3313 0 2140 114 0 0 chr6 132385828 132386127 -50029115 - AluSg SINE Alu -11 299 1 456 260 104 47 chr6 132386742 132386934 -50028308 - MER63A DNA MER1_type -4 206 4 744 255 9 33 chr6 132387080 132387292 -50027950 - MER3 DNA MER1_type -2 207 1 25 75 0 0 chr6 132387538 132387591 -50027651 + AT_rich Low_complexity Low_complexity 1 53 0 410 344 106 18 chr6 132388668 132388941 -50026301 - L3 LINE CR1 -952 625 329 413 275 46 0 chr6 132389772 132389881 -50025361 - L2 LINE L2 0 3313 3200 362 347 150 0 chr6 132390084 132390277 -50024965 - MIR SINE MIR 0 262 41 25 31 0 0 chr6 132391418 132391450 -50023792 + AT_rich Low_complexity Low_complexity 1 32 0 2176 92 6 41 chr6 132392059 132392375 -50022867 - AluSc SINE Alu -4 305 1 2177 183 23 0 chr6 132392515 132392909 -50022333 - MER57A LTR ERV1 0 403 1 589 295 125 47 chr6 132394620 132394975 -50020267 + L2 LINE L2 2857 3252 -61 1875 165 0 16 chr6 132394975 132395290 -50019952 - AluSx SINE Alu -2 310 1 589 295 125 47 chr6 132395290 132395358 -50019884 + L2 LINE L2 3252 3313 0 249 33 0 0 chr6 132396595 132396625 -50018617 + (TG)n Simple_repeat Simple_repeat 1 30 0 1368 159 144 12 chr6 132397294 132397647 -50017595 - LTR47A LTR ERVL 0 452 1 1401 191 11 15 chr6 132397666 132397933 -50017309 - AluJo SINE Alu -14 298 33 237 365 35 0 chr6 132398976 132399061 -50016181 - L2 LINE L2 -1 3271 3184 275 269 13 13 chr6 132401525 132401603 -50013639 - L2 LINE L2 -498 2816 2739 239 250 0 0 chr6 132401610 132401666 -50013576 + MLT1J1 LTR MaLR 265 320 -126 2059 274 119 66 chr6 132401773 132402002 -50013240 - L2 LINE L2 -706 2608 2393 447 19 0 0 chr6 132402002 132402054 -50013188 + (TG)n Simple_repeat Simple_repeat 2 53 0 2059 274 119 66 chr6 132402054 132402640 -50012602 - L2 LINE L2 -921 2393 1839 352 0 42 0 chr6 132402640 132402688 -50012554 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2059 274 119 66 chr6 132402688 132403178 -50012064 - L2 LINE L2 -1475 1839 1233 253 378 92 32 chr6 132404479 132404728 -50010514 - L3 LINE CR1 -407 1170 907 346 362 83 39 chr6 132404900 132405334 -50009908 + MLT1K LTR MaLR 74 526 -62 194 274 113 65 chr6 132405405 132405529 -50009713 - L3 LINE CR1 -1085 492 363 303 321 38 0 chr6 132405619 132405725 -50009517 + L2 LINE L2 3204 3313 0 359 256 62 16 chr6 132405971 132406100 -50009142 + MIR SINE MIR 71 205 -57 5867 157 6 9 chr6 132406743 132407969 -50007273 + L1PB1 LINE L1 4556 5777 -374 231 36 0 0 chr6 132407969 132407997 -50007245 + (TG)n Simple_repeat Simple_repeat 2 29 0 5867 157 6 9 chr6 132407997 132408370 -50006872 + L1PB1 LINE L1 5777 6150 -1 2159 136 0 12 chr6 132408663 132409001 -50006241 + MER1B DNA MER1_type 4 337 0 354 23 0 0 chr6 132409485 132409528 -50005714 + (TG)n Simple_repeat Simple_repeat 2 44 0 269 329 36 14 chr6 132410042 132410182 -50005060 + L2 LINE L2 3171 3313 0 351 282 183 33 chr6 132410189 132410402 -50004840 + L2 LINE L2 2567 2811 -503 201 304 39 59 chr6 132410727 132410829 -50004413 + L2 LINE L2 3112 3211 -61 218 330 0 9 chr6 132411185 132411291 -50003951 + CT-rich Low_complexity Low_complexity 3 107 0 * 274 176 46 56 chr6 132411228 132411336 -50003906 + (TCTCTG)n Simple_repeat Simple_repeat 2 108 0 2184 85 0 0 chr6 132413994 132414329 -50000913 - AluY SINE Alu 0 335 1 368 200 131 69 chr6 132416572 132416732 -49998510 - MIR SINE MIR -7 255 86 21 0 0 0 chr6 132417602 132417623 -49997619 + AT_rich Low_complexity Low_complexity 1 21 0 256 276 0 0 chr6 132417680 132417738 -49997504 + L2 LINE L2 3202 3259 -54 189 301 54 54 chr6 132417816 132417909 -49997333 - MIR SINE MIR -72 190 98 199 273 0 0 chr6 132419069 132419124 -49996118 + L2 LINE L2 2245 2299 -1015 522 266 71 7 chr6 132419746 132419900 -49995342 + MIR SINE MIR 29 192 -70 31 58 0 0 chr6 132420531 132420583 -49994659 + AT_rich Low_complexity Low_complexity 1 52 0 246 32 0 0 chr6 132420898 132420929 -49994313 + (TC)n Simple_repeat Simple_repeat 2 32 0 291 104 0 0 chr6 132420930 132420978 -49994264 + (CA)n Simple_repeat Simple_repeat 2 49 0 210 191 0 0 chr6 132421394 132421441 -49993801 + (CA)n Simple_repeat Simple_repeat 2 48 0 278 322 94 18 chr6 132422743 132422914 -49992328 + MIR SINE MIR 7 190 -72 28 0 0 0 chr6 132423575 132423603 -49991639 + AT_rich Low_complexity Low_complexity 1 28 0 457 312 58 32 chr6 132424066 132424220 -49991022 - MIR3 SINE MIR -9 199 42 22 0 0 0 chr6 132424255 132424277 -49990965 + AT_rich Low_complexity Low_complexity 1 22 0 247 158 40 26 chr6 132425681 132425699 -49989543 + (TATAA)n Simple_repeat Simple_repeat 3 19 -60 1520 199 3 3 chr6 132425699 132425985 -49989257 + AluJb SINE Alu 1 286 -26 247 158 40 26 chr6 132425985 132426014 -49989228 + (TATAA)n Simple_repeat Simple_repeat 19 46 -33 2099 104 3 0 chr6 132426014 132426303 -49988939 + AluY SINE Alu 3 292 -19 247 158 40 26 chr6 132426303 132426330 -49988912 + (TATAA)n Simple_repeat Simple_repeat 46 79 0 3140 175 33 35 chr6 132428228 132428948 -49986294 + Looper DNA T2_type 95 813 -745 450 309 0 0 chr6 132428948 132429045 -49986197 - Tigger7 DNA MER2_type -1 2586 2490 * 1358 224 31 0 chr6 132429044 132429303 -49985939 - Tigger7 DNA MER2_type -466 267 1 * 1920 219 81 88 chr6 132429303 132429570 -49985672 + Looper DNA T2_type 811 1078 -480 2258 87 0 10 chr6 132429570 132429869 -49985373 + AluSc SINE Alu 3 298 -11 1920 219 81 88 chr6 132429869 132430352 -49984890 + Looper DNA T2_type 1078 1556 -2 21 0 0 0 chr6 132431073 132431094 -49984148 + AT_rich Low_complexity Low_complexity 1 21 0 1748 163 3 0 chr6 132433485 132433779 -49981463 - AluSx SINE Alu -17 295 1 396 271 236 0 chr6 132434389 132434533 -49980709 + MIR SINE MIR 62 239 -23 23 0 0 0 chr6 132434632 132434655 -49980587 + AT_rich Low_complexity Low_complexity 1 23 0 413 308 42 32 chr6 132437419 132437580 -49977662 + MIR SINE MIR 5 164 -98 2535 30 0 10 chr6 132437580 132437879 -49977363 + AluY SINE Alu 16 311 0 413 308 42 32 chr6 132437879 132437936 -49977306 + MIR SINE MIR 164 219 -43 250 87 43 0 chr6 132438505 132438551 -49976691 + (TA)n Simple_repeat Simple_repeat 2 49 0 253 351 60 40 chr6 132438560 132438811 -49976431 - L2 LINE L2 -168 3145 2890 1089 85 0 0 chr6 132438814 132438955 -49976287 + AluYb8 SINE Alu 1 141 -177 13511 29 1 0 chr6 132438955 132440564 -49974678 - L1P1 LINE L1 -1125 5021 3412 3140 26 2 1 chr6 132440560 132441086 -49974156 + L1P1 LINE L1 5012 5537 -618 * 1630 175 54 18 chr6 132441290 132441569 -49973673 + MER2 DNA MER2_type 1 268 -76 225 0 0 0 chr6 132441569 132441594 -49973648 + (TA)n Simple_repeat Simple_repeat 2 26 0 2073 110 0 0 chr6 132441594 132441875 -49973367 - AluSx SINE Alu -14 298 18 1630 175 54 18 chr6 132441875 132441926 -49973316 + MER2 DNA MER2_type 267 344 0 289 301 131 62 chr6 132442237 132442413 -49972829 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chr6 132444939 132444962 -49970280 + AT_rich Low_complexity Low_complexity 1 23 0 2565 60 40 3 chr6 132445695 132446044 -49969198 - L1PA7 LINE L1 -4 6150 5789 1843 59 0 8 chr6 132446044 132446281 -49968961 + L1PA7 LINE L1 5559 5793 -361 486 83 0 0 chr6 132446463 132446535 -49968707 + (TC)n Simple_repeat Simple_repeat 2 73 0 717 314 75 25 chr6 132446615 132447054 -49968188 + L2 LINE L2 1850 2310 -1004 1046 33 0 66 chr6 132447067 132447218 -49968024 + L1PA10 LINE L1 6028 6168 0 2278 68 0 0 chr6 132447230 132447538 -49967704 + AluY SINE Alu 1 308 0 254 342 83 79 chr6 132447634 132447912 -49967330 + L2 LINE L2 2566 2844 -470 2141 81 10 58 chr6 132448442 132448752 -49966490 + AluSq SINE Alu 1 295 -18 524 306 63 21 chr6 132450199 132450483 -49964759 + L1M4 LINE L1 3095 3390 -2756 2087 266 108 40 chr6 132450520 132450675 -49964567 + L1M4 LINE L1 3526 3669 -2477 414 0 0 0 chr6 132450675 132450721 -49964521 + (TA)n Simple_repeat Simple_repeat 1 46 0 2087 266 108 40 chr6 132450721 132451736 -49963506 + L1M4 LINE L1 3669 4776 -1370 374 338 99 29 chr6 132451744 132452016 -49963226 + L1M2 LINE L1 4942 5232 -914 219 139 0 0 chr6 132452016 132452052 -49963190 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 452 212 100 26 chr6 132452064 132452276 -49962966 + L1M2 LINE L1 5259 5488 -708 27 49 0 0 chr6 132452288 132452329 -49962913 + AT_rich Low_complexity Low_complexity 1 41 0 557 264 50 37 chr6 132452376 132452618 -49962624 - L1MEd LINE L1 -4866 1253 1009 263 319 126 11 chr6 132452818 132453009 -49962233 - MIR SINE MIR 0 262 50 180 219 0 0 chr6 132453541 132453582 -49961660 + CT-rich Low_complexity Low_complexity 2 42 0 416 322 42 25 chr6 132453744 132454027 -49961215 - L1MC4 LINE L1 -571 7471 7184 26 50 0 0 chr6 132455405 132455445 -49959797 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr6 132455862 132455887 -49959355 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 132456780 132456804 -49958438 + AT_rich Low_complexity Low_complexity 1 24 0 253 330 88 33 chr6 132459311 132459493 -49955749 + MIR3 SINE MIR 10 201 -7 4089 251 51 24 chr6 132460797 132462178 -49953064 + L1MC/D LINE L1 3729 5147 -999 1289 151 124 0 chr6 132462180 132462439 -49952803 + L1MC/D LINE L1 5357 5647 -2395 458 274 121 11 chr6 132463440 132463630 -49951612 + MIR SINE MIR 47 257 -5 225 154 0 0 chr6 132464293 132464332 -49950910 + CT-rich Low_complexity Low_complexity 2 40 0 180 197 66 16 chr6 132464332 132464393 -49950849 + MER5C DNA MER1_type 50 113 -211 503 299 13 0 chr6 132465360 132465514 -49949728 + MIR SINE MIR 33 188 -74 208 211 0 0 chr6 132465514 132465552 -49949690 + (CA)n Simple_repeat Simple_repeat 2 39 0 251 336 35 52 chr6 132465690 132465806 -49949436 - L2 LINE L2 -1 3271 3158 330 275 51 65 chr6 132465912 132466050 -49949192 - MER115 DNA AcHobo -273 420 285 1624 261 98 67 chr6 132516087 132517039 -49898203 - L2 LINE L2 -717 2597 1617 180 0 0 0 chr6 132517545 132517565 -49897677 + (TA)n Simple_repeat Simple_repeat 2 21 0 342 0 0 0 chr6 132517684 132517722 -49897520 + (CA)n Simple_repeat Simple_repeat 2 39 0 638 249 58 49 chr6 132517943 132518168 -49897074 - MIR SINE MIR -35 227 1 579 278 73 10 chr6 132518289 132518494 -49896748 + MLT1L LTR MaLR 356 573 -42 180 359 0 31 chr6 132518842 132518906 -49896336 + MIR SINE MIR 10 71 -191 693 201 98 23 chr6 132518906 132519120 -49896122 - MER96B DNA MER1_type? -182 235 6 257 309 89 0 chr6 132519318 132519441 -49895801 + MIR SINE MIR 111 244 -18 2000 143 39 36 chr6 132519888 132520251 -49894991 - THE1B LTR MaLR 0 364 1 182 195 122 0 chr6 132520656 132520697 -49894545 - MIR SINE MIR -9 253 208 21 0 0 0 chr6 132522346 132522367 -49892875 + AT_rich Low_complexity Low_complexity 1 21 0 491 178 0 9 chr6 132522906 132523013 -49892229 + CT-rich Low_complexity Low_complexity 2 107 0 302 231 0 0 chr6 132523120 132523185 -49892057 + MLT1A1 LTR MaLR 3 67 -298 2649 80 97 10 chr6 132523185 132523597 -49891645 + LTR7 LTR ERV1 1 448 -2 13797 100 14 23 chr6 132523606 132526366 -49888876 + HERVH LTR ERV1 1 2984 -4729 1497 125 0 0 chr6 132526364 132526596 -49888646 + HERVH LTR ERV1 3504 3735 -3978 * 1689 159 5 5 chr6 132526606 132526912 -49888330 + HERVH LTR ERV1 3995 4288 -3425 6032 120 2 5 chr6 132526912 132527844 -49887398 + HERVH LTR ERV1 4221 5149 -2564 2578 96 48 2 chr6 132527861 132528279 -49886963 + HERVH LTR ERV1 7277 7713 0 2507 96 93 5 chr6 132528279 132528686 -49886556 + LTR7 LTR ERV1 1 443 -7 1446 175 60 3 chr6 132528700 132528985 -49886257 + MLT1A1 LTR MaLR 63 363 -2 747 193 0 0 chr6 132530140 132530275 -49884967 - AluSg/x SINE Alu -3 309 175 216 149 0 43 chr6 132531072 132531119 -49884123 - L2 LINE L2 -4 3268 3224 * 286 245 75 0 chr6 132531087 132531181 -49884061 - MIR SINE MIR -11 251 151 332 265 0 0 chr6 132531739 132531837 -49883405 - MER94 DNA DNA -36 98 1 1060 269 106 22 chr6 132531865 132532448 -49882794 + MLT2F LTR ERVL 30 661 -2 212 208 42 0 chr6 132533509 132533557 -49881685 + MER91 DNA MER1_type 41 90 -100 2278 146 16 46 chr6 132533743 132534182 -49881060 - MSTA LTR MaLR 0 428 3 9266 170 13 7 chr6 132534184 132535824 -49879418 - MSTA-int LTR MaLR 0 1651 1 2254 154 27 5 chr6 132535851 132536259 -49878983 - MSTA LTR MaLR -11 417 1 297 0 0 0 chr6 132537832 132537865 -49877377 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 384 218 153 29 chr6 132537923 132538093 -49877149 - L1ME4a LINE L1 0 6121 5931 240 315 0 0 chr6 132538280 132538369 -49876873 - L1ME4a LINE L1 -440 5681 5593 247 287 11 23 chr6 132538837 132538924 -49876318 - MIR3 SINE MIR -8 200 115 207 329 27 0 chr6 132539610 132539683 -49875559 + MIR SINE MIR 176 250 -12 393 22 0 0 chr6 132541190 132541236 -49874006 + (TA)n Simple_repeat Simple_repeat 1 46 0 194 81 27 0 chr6 132542809 132542846 -49872396 + (TTTTTA)n Simple_repeat Simple_repeat 3 40 0 853 182 23 6 chr6 132542899 132543075 -49872167 - MLT1A1 LTR MaLR -186 179 1 284 134 60 0 chr6 132543256 132543323 -49871919 + L1PA13 LINE L1 6092 6162 -1 527 198 9 9 chr6 132543426 132543537 -49871705 - MLT1A1 LTR MaLR 0 365 255 9078 152 21 16 chr6 132543547 132546024 -49869218 - L1PA14 LINE L1 -67 6094 3607 2146 137 21 32 chr6 132546024 132546403 -49868839 + THE1C LTR MaLR 1 375 0 9078 152 21 16 chr6 132546403 132546552 -49868690 - L1PA14 LINE L1 -2554 3607 3460 1173 206 87 49 chr6 132546783 132547254 -49867988 + LTR24B LTR ERV1 99 567 -9 583 254 8 0 chr6 132547280 132547410 -49867832 - FLAM_A SINE Alu -2 131 1 1538 188 8 80 chr6 132548287 132548675 -49866567 - MER4D LTR ERV1 -6 897 538 2493 85 128 5 chr6 132548677 132549076 -49866166 - LTR7 LTR ERV1 -2 448 1 1988 114 53 16 chr6 132549076 132549452 -49865790 - HERVH LTR ERV1 0 7713 7324 1221 116 34 39 chr6 132549452 132549685 -49865557 - HERVH LTR ERV1 -1894 5819 5588 * 3996 153 0 1 chr6 132549668 132550328 -49864914 - HERVH LTR ERV1 -2567 5146 4488 3290 97 4 6 chr6 132550330 132550833 -49864409 - HERVH LTR ERV1 -3720 3993 3492 819 143 27 0 chr6 132550823 132550970 -49864272 - HERVH LTR ERV1 -4423 3290 3140 * 19465 89 16 15 chr6 132550964 132553946 -49861296 - HERVH LTR ERV1 -4726 2987 1 2579 80 122 5 chr6 132553948 132554349 -49860893 - LTR7 LTR ERV1 -2 448 1 3214 137 19 6 chr6 132554350 132554884 -49860358 - MER4D LTR ERV1 -362 541 1 339 176 35 12 chr6 132554935 132555020 -49860222 - MLT1A2 LTR MaLR -2 372 286 332 194 28 93 chr6 132555028 132555136 -49860106 - MLT1A2 LTR MaLR -273 101 1 28 0 0 0 chr6 132556283 132556311 -49858931 + AT_rich Low_complexity Low_complexity 1 28 0 3025 143 33 61 chr6 132556434 132556824 -49858418 + MER1A DNA MER1_type 3 375 -2325 2177 108 3 3 chr6 132556824 132557112 -49858130 + AluSg SINE Alu 1 288 -22 3025 143 33 61 chr6 132557112 132557261 -49857981 + MER1A DNA MER1_type 375 527 0 24 0 0 0 chr6 132557325 132557349 -49857893 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 132557518 132557539 -49857703 + AT_rich Low_complexity Low_complexity 1 21 0 2341 105 0 0 chr6 132557591 132557887 -49857355 - AluSq SINE Alu -17 296 1 1640 188 157 15 chr6 132559758 132560167 -49855075 - MLT1C LTR MaLR 0 467 1 340 120 67 53 chr6 132560703 132560778 -49854464 + Tigger1 DNA MER2_type 721 796 -1622 25 51 0 0 chr6 132560822 132560861 -49854381 + AT_rich Low_complexity Low_complexity 1 39 0 13743 144 16 27 chr6 132561846 132564290 -49850952 + Tigger1 DNA MER2_type 2 2418 0 737 213 0 59 chr6 132564971 132565140 -49850102 + MER58B DNA MER1_type 183 341 0 346 349 65 69 chr6 132566192 132566424 -49848818 + L2 LINE L2 3015 3245 -27 23 33 0 0 chr6 132567258 132567288 -49847954 + AT_rich Low_complexity Low_complexity 1 30 0 365 364 12 19 chr6 132567867 132568029 -49847213 - MER91A DNA MER1_type 0 196 36 261 303 103 65 chr6 132568175 132568330 -49846912 - MIR SINE MIR -68 194 34 367 242 232 0 chr6 132568371 132568466 -49846776 - L2 LINE L2 -15 3298 3182 2661 117 17 5 chr6 132568506 132568926 -49846316 + L1PB2 LINE L1 5724 6148 -3 203 254 18 0 chr6 132569846 132569901 -49845341 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 319 330 82 0 chr6 132569901 132569998 -49845244 - L2 LINE L2 0 3272 3168 39 0 0 0 chr6 132571543 132571582 -49843660 + AT_rich Low_complexity Low_complexity 1 39 0 287 169 14 0 chr6 132571594 132571665 -49843577 + (TA)n Simple_repeat Simple_repeat 1 72 0 1478 154 99 15 chr6 132571846 132572119 -49843123 + AluSg SINE Alu 1 296 -14 23 68 0 0 chr6 132572577 132572621 -49842621 + AT_rich Low_complexity Low_complexity 1 44 0 757 157 8 15 chr6 132574196 132574330 -49840912 - FLAM_C SINE Alu 0 133 1 375 350 17 6 chr6 132574495 132574672 -49840570 + MIR SINE MIR 34 212 -50 342 316 177 34 chr6 132574888 132575232 -49840010 + L1MC4a LINE L1 5331 5763 -2045 2254 105 0 0 chr6 132575232 132575536 -49839706 + AluSx SINE Alu 1 304 -8 342 316 177 34 chr6 132575536 132575665 -49839577 + L1MC4a LINE L1 5763 5872 -1936 224 305 0 42 chr6 132576179 132576274 -49838968 + L2 LINE L2 3182 3272 0 398 301 15 15 chr6 132576772 132576905 -49838337 - L2 LINE L2 -1 3271 3139 548 259 21 7 chr6 132577242 132577385 -49837857 + MLT1E LTR MaLR 449 593 0 984 73 0 29 chr6 132578450 132578587 -49836655 + AluSq SINE Alu 1 133 -179 1343 31 0 0 chr6 132578600 132578761 -49836481 + L1PA4 LINE L1 5992 6152 -3 521 65 0 39 chr6 132578798 132578875 -49836367 + AluSq SINE Alu 129 202 -111 671 200 0 0 chr6 132578918 132579038 -49836204 - FAM SINE Alu -60 125 6 528 234 162 7 chr6 132580387 132580541 -49834701 + MER5A DNA MER1_type 9 186 -3 249 57 0 0 chr6 132580630 132580665 -49834577 + (A)n Simple_repeat Simple_repeat 1 35 0 29 47 0 0 chr6 132580805 132580848 -49834394 + AT_rich Low_complexity Low_complexity 1 43 0 44 35 0 0 chr6 132580918 132580976 -49834266 + AT_rich Low_complexity Low_complexity 1 58 0 5118 155 19 55 chr6 132580976 132581814 -49833428 + L1MA4 LINE L1 4975 5842 -458 204 40 0 0 chr6 132581814 132581839 -49833403 + (TG)n Simple_repeat Simple_repeat 2 26 0 5118 155 19 55 chr6 132581839 132581879 -49833363 + L1MA4 LINE L1 5842 5882 -418 207 0 0 0 chr6 132581879 132581902 -49833340 + (CA)n Simple_repeat Simple_repeat 2 24 0 5118 155 19 55 chr6 132581902 132582395 -49832847 + L1MA4 LINE L1 5882 6300 0 1470 179 73 0 chr6 132582410 132582683 -49832559 + AluJo SINE Alu 1 293 -19 21 57 0 0 chr6 132582800 132582835 -49832407 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 132584031 132584066 -49831176 + AT_rich Low_complexity Low_complexity 1 35 0 2086 114 7 0 chr6 132584079 132584378 -49830864 - AluSq SINE Alu -12 301 1 1672 234 97 4 chr6 132584484 132584946 -49830296 - MLT1D LTR MaLR 0 505 1 267 203 0 0 chr6 132585159 132585218 -49830024 + CT-rich Low_complexity Low_complexity 3 61 0 25 51 0 0 chr6 132585255 132585294 -49829948 + AT_rich Low_complexity Low_complexity 1 39 0 2059 282 78 11 chr6 132585506 132586056 -49829186 - MLT1G1 LTR MaLR -8 587 1 704 276 0 26 chr6 132586547 132586739 -49828503 - MER5A DNA MER1_type -2 187 1 310 242 61 40 chr6 132587358 132587457 -49827785 + L2 LINE L2 3206 3306 -7 484 241 54 12 chr6 132587884 132588050 -49827192 + L1ME3A LINE L1 5764 5936 -234 378 217 0 0 chr6 132588311 132588380 -49826862 + Tigger2 DNA MER2_type 1 69 -2649 * 2279 156 32 25 chr6 132588378 132588656 -49826586 + Tigger2 DNA MER2_type 2280 2564 -154 333 82 0 0 chr6 132588656 132588705 -49826537 + (CA)n Simple_repeat Simple_repeat 2 50 0 2279 156 32 25 chr6 132588705 132588862 -49826380 + Tigger2 DNA MER2_type 2564 2718 0 24 67 0 0 chr6 132588893 132588938 -49826304 + AT_rich Low_complexity Low_complexity 1 45 0 191 309 107 0 chr6 132590385 132590469 -49824773 + L2 LINE L2 3204 3296 -17 13635 125 37 58 chr6 132591633 132591817 -49823425 - Tigger1 DNA MER2_type -1 2417 2231 1843 97 25 0 chr6 132591817 132592095 -49823147 + L1MA3 LINE L1 6021 6305 0 13635 125 37 58 chr6 132592095 132592541 -49822701 - Tigger1 DNA MER2_type -187 2231 1777 1590 163 51 3 chr6 132592541 132592836 -49822406 + AluSx SINE Alu 1 309 -3 13635 125 37 58 chr6 132592836 132593236 -49822006 - Tigger1 DNA MER2_type -641 1777 1370 2092 102 3 3 chr6 132593236 132593570 -49821672 - AluSq SINE Alu 0 334 1 13635 125 37 58 chr6 132593570 132595005 -49820237 - Tigger1 DNA MER2_type -1048 1370 1 1238 228 86 31 chr6 132598091 132598614 -49816628 - L1MC5 LINE L1 -65 7896 7345 184 149 43 0 chr6 132598624 132598671 -49816571 + CT-rich Low_complexity Low_complexity 4 52 0 268 289 93 10 chr6 132598866 132598963 -49816279 - L3 LINE CR1 -418 1159 1055 581 288 68 14 chr6 132599728 132599950 -49815292 + MIR SINE MIR 29 262 0 239 340 33 40 chr6 132600191 132600341 -49814901 + MIR3 SINE MIR 24 172 -36 1408 209 6 35 chr6 132600492 132600807 -49814435 + AluJo SINE Alu 3 308 -4 264 30 0 0 chr6 132601665 132601698 -49813544 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 304 37 0 chr6 132601734 132601895 -49813347 + MIR SINE MIR 86 252 -10 31 0 0 0 chr6 132606029 132606060 -49809182 + AT_rich Low_complexity Low_complexity 1 31 0 23 92 0 0 chr6 132607532 132607597 -49807645 + AT_rich Low_complexity Low_complexity 1 65 0 265 414 83 23 chr6 132607741 132608043 -49807199 - L2 LINE L2 -9 3263 2944 253 357 70 7 chr6 132608133 132608276 -49806966 - L2 LINE L2 -467 2847 2696 249 363 68 50 chr6 132608276 132608877 -49806365 - L2 LINE L2 -1389 1925 1314 410 306 151 29 chr6 132609282 132609527 -49805715 - MLT1J1 LTR MaLR -92 354 80 304 343 9 0 chr6 132610961 132611066 -49804176 - MER117 DNA MER1_type -43 154 49 23 68 0 0 chr6 132611476 132611520 -49803722 + AT_rich Low_complexity Low_complexity 1 44 0 191 374 57 16 chr6 132611601 132611724 -49803518 - MIR3 SINE MIR -32 176 49 2210 142 52 38 chr6 132612316 132612528 -49802714 - Tigger2a DNA MER2_type -2278 430 222 2065 118 3 14 chr6 132612528 132612825 -49802417 + AluSg SINE Alu 1 294 -16 2210 142 52 38 chr6 132612825 132613036 -49802206 - Tigger2a DNA MER2_type -2486 222 1 287 333 187 23 chr6 132613482 132613507 -49801735 + L2 LINE L2 260 280 -3034 2357 142 14 3 chr6 132613507 132613867 -49801375 - THE1B LTR MaLR 0 364 1 287 333 187 23 chr6 132613867 132614183 -49801059 + L2 LINE L2 280 657 -2657 277 125 71 18 chr6 132614197 132614253 -49800989 - MER96B DNA MER1_type? -167 250 192 1493 166 127 27 chr6 132614292 132614624 -49800618 - MLT1A1 LTR MaLR 0 365 1 182 289 13 92 chr6 132614938 132615014 -49800228 + L2 LINE L2 3199 3268 -45 1623 202 41 68 chr6 132615686 132616288 -49798954 + L1MA9 LINE L1 5726 6275 -25 342 301 72 97 chr6 132616407 132616686 -49798556 + L1ME3A LINE L1 668 939 -5266 291 235 67 42 chr6 132616686 132616805 -49798437 + L1M3d LINE L1 1301 1680 -4781 566 286 37 24 chr6 132616939 132617313 -49797929 + L1ME3A LINE L1 1289 1667 -4729 795 278 103 39 chr6 132617666 132618474 -49796768 + L1ME3A LINE L1 2103 2919 -3296 2492 162 12 14 chr6 132618474 132618901 -49796341 + MSTA LTR MaLR 3 428 0 795 278 103 39 chr6 132618901 132618915 -49796327 + L1ME3A LINE L1 2919 2931 -3284 * 888 329 55 21 chr6 132618911 132619764 -49795478 + L1ME3A LINE L1 3478 4359 -1856 842 243 46 39 chr6 132619806 132620090 -49795152 + L1ME3A LINE L1 5697 5982 -257 303 183 133 83 chr6 132620242 132620362 -49794880 + L1ME3A LINE L1 6068 6193 -38 552 230 39 28 chr6 132620482 132620660 -49794582 - MER96B DNA MER1_type? -1 416 237 825 244 34 14 chr6 132620664 132620873 -49794369 - MIR SINE MIR -36 226 14 294 289 132 8 chr6 132623099 132623220 -49792022 - L2 LINE L2 -1 3271 3136 391 330 155 19 chr6 132623479 132624010 -49791232 + L2 LINE L2 2712 3307 -6 2330 107 0 0 chr6 132624373 132624673 -49790569 + AluSq SINE Alu 1 300 -13 624 337 122 38 chr6 132624744 132625863 -49789379 - L2 LINE L2 -661 2653 1441 1550 290 88 15 chr6 132626171 132626820 -49788422 + L2 LINE L2 1816 2511 -803 3365 191 62 26 chr6 132626825 132627583 -49787659 - LTR1 LTR ERV1 0 785 1 799 333 67 39 chr6 132627609 132627766 -49787476 + L2 LINE L2 2534 2685 -628 1918 159 3 3 chr6 132627766 132628075 -49787167 - AluSx SINE Alu -3 309 1 799 333 67 39 chr6 132628075 132628399 -49786843 + L2 LINE L2 2685 3030 -283 245 230 143 85 chr6 132628425 132628642 -49786600 + MLT1H LTR MaLR 8 208 -201 379 339 88 8 chr6 132628865 132629104 -49786138 + L2 LINE L2 3056 3313 0 2390 116 11 19 chr6 132630803 132631181 -49784061 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr6 132631260 132631286 -49783956 + AT_rich Low_complexity Low_complexity 1 26 0 2436 230 24 112 chr6 132632390 132632413 -49782829 - MER21B LTR ERV1 -79 784 761 2536 96 11 11 chr6 132632413 132632777 -49782465 - THE1B LTR MaLR 0 364 1 2436 230 24 112 chr6 132632777 132633376 -49781866 - MER21B LTR ERV1 -102 761 254 2356 94 0 0 chr6 132633376 132633673 -49781569 - AluSc SINE Alu -12 297 1 2436 230 24 112 chr6 132633673 132633897 -49781345 - MER21B LTR ERV1 -609 254 12 1031 203 106 114 chr6 132634158 132634345 -49780897 + LTR54 LTR ERV1 2 189 -321 2018 119 20 0 chr6 132634345 132634638 -49780604 - AluSx SINE Alu -13 299 1 1031 203 106 114 chr6 132634638 132634943 -49780299 + LTR54 LTR ERV1 189 490 -20 3624 142 20 28 chr6 132635207 132635847 -49779395 - MER41B LTR ERV1 0 635 1 342 296 101 49 chr6 132635893 132635954 -49779288 + L1ME4a LINE L1 5816 5872 -249 2009 139 7 23 chr6 132635954 132636263 -49778979 + AluSx SINE Alu 1 304 -8 342 296 101 49 chr6 132636263 132636488 -49778754 + L1ME4a LINE L1 5872 6117 -4 22 0 0 0 chr6 132636762 132636784 -49778458 + AT_rich Low_complexity Low_complexity 1 22 0 725 276 98 9 chr6 132637710 132637935 -49777307 + MIR SINE MIR 16 260 -2 25 31 0 0 chr6 132638074 132638106 -49777136 + AT_rich Low_complexity Low_complexity 1 32 0 275 252 96 0 chr6 132638148 132638263 -49776979 - L1ME4a LINE L1 -5 6116 5991 554 171 0 0 chr6 132638527 132638615 -49776627 + FLAM_A SINE Alu 35 122 -20 27 29 0 0 chr6 132639077 132639111 -49776131 + AT_rich Low_complexity Low_complexity 1 34 0 3026 164 52 9 chr6 132639145 132639680 -49775562 - MER6A DNA MER2_type -3 602 45 315 178 0 68 chr6 132639688 132639761 -49775481 - MER6A DNA MER2_type -538 67 0 1930 216 46 24 chr6 132639780 132640239 -49775003 - MLT1D LTR MaLR -32 473 5 1990 151 33 36 chr6 132640239 132640604 -49774638 - THE1B LTR MaLR 0 364 1 11718 94 3 5 chr6 132640604 132642185 -49773057 - THE1B-int LTR MaLR 0 1580 3 2058 137 36 39 chr6 132642188 132642552 -49772690 - THE1B LTR MaLR -1 363 1 397 239 17 8 chr6 132645117 132645234 -49770008 + L1MB8 LINE L1 6059 6176 -2 739 258 22 0 chr6 132645426 132645604 -49769638 - MIR SINE MIR 0 262 81 186 368 29 0 chr6 132645660 132645728 -49769514 - MIR SINE MIR -183 79 10 849 271 143 37 chr6 132645728 132646134 -49769108 - MLT1J2 LTR MaLR 0 450 2 189 0 0 0 chr6 132647732 132647753 -49767489 + (CA)n Simple_repeat Simple_repeat 2 22 0 333 62 0 0 chr6 132647943 132647991 -49767251 + (TA)n Simple_repeat Simple_repeat 2 49 0 422 309 73 0 chr6 132649001 132649137 -49766105 + MIR SINE MIR 28 173 -89 633 265 41 12 chr6 132649682 132649852 -49765390 - MER69A DNA AcHobo -2 175 1 278 222 48 119 chr6 132649919 132650045 -49765197 + MIR SINE MIR 37 153 -109 2012 134 0 7 chr6 132650136 132650435 -49764807 - AluSx SINE Alu -15 297 1 198 360 27 18 chr6 132650473 132650584 -49764658 - MIR SINE MIR -148 114 3 29 28 0 0 chr6 132650964 132651000 -49764242 + AT_rich Low_complexity Low_complexity 1 36 0 578 281 12 98 chr6 132651503 132651749 -49763493 + MIR SINE MIR 23 247 -15 426 239 92 0 chr6 132651909 132652018 -49763224 - MER69A DNA AcHobo -58 119 1 2033 234 153 20 chr6 132652634 132653781 -49761461 + L1ME1 LINE L1 4695 5994 -172 476 222 17 0 chr6 132653802 132653919 -49761323 + L1MA10 LINE L1 6216 6334 0 40 59 0 0 chr6 132654771 132654839 -49760403 + AT_rich Low_complexity Low_complexity 1 68 0 1789 107 33 0 chr6 132654846 132655118 -49760124 + L1PA13 LINE L1 5883 6163 0 209 189 0 0 chr6 132655515 132655552 -49759690 + (CA)n Simple_repeat Simple_repeat 2 38 0 191 330 125 0 chr6 132656074 132656186 -49759056 + MIR SINE MIR 81 206 -56 562 255 207 0 chr6 132656490 132656698 -49758544 + MIR SINE MIR 12 262 0 492 314 95 27 chr6 132657129 132657425 -49757817 + L2 LINE L2 2465 2780 -534 571 333 128 10 chr6 132657441 132657753 -49757489 + L2 LINE L2 2921 3269 -44 2179 51 65 4 chr6 132657874 132658149 -49757093 - AluY SINE Alu -19 292 1 246 271 0 0 chr6 132658545 132658641 -49756601 + (TA)n Simple_repeat Simple_repeat 1 96 0 21 0 0 0 chr6 132658645 132658666 -49756576 + AT_rich Low_complexity Low_complexity 1 21 0 1437 167 96 25 chr6 132658936 132659217 -49756025 - AluSg SINE Alu -9 301 1 914 208 30 0 chr6 132659269 132659437 -49755805 - FAM SINE Alu -2 173 1 22 35 0 0 chr6 132659527 132659556 -49755686 + AT_rich Low_complexity Low_complexity 1 29 0 249 357 123 0 chr6 132660804 132660958 -49754284 - MIR SINE MIR -70 192 20 201 266 117 43 chr6 132661059 132661153 -49754089 - L2 LINE L2 -2088 1226 1126 1343 198 186 14 chr6 132662467 132662891 -49752351 - LTR54B LTR ERV1 -1 497 1 234 206 79 16 chr6 132662897 132662921 -49752321 + MER5A DNA MER1_type 43 64 -125 312 70 0 0 chr6 132662921 132662964 -49752278 + (CA)n Simple_repeat Simple_repeat 2 44 0 234 206 79 16 chr6 132662964 132663002 -49752240 + MER5A DNA MER1_type 64 109 -80 253 307 33 67 chr6 132663306 132663456 -49751786 - MER5A DNA MER1_type -2 187 43 372 97 16 32 chr6 132663704 132663766 -49751476 - MSTA LTR MaLR -2 426 366 2491 181 2 2 chr6 132665324 132665727 -49749515 - MLT2B3 LTR ERVL -151 403 1 2427 101 0 0 chr6 132666115 132666423 -49748819 - AluSx SINE Alu -4 308 1 2163 131 0 0 chr6 132667565 132667871 -49747371 - AluSx SINE Alu -6 306 1 208 147 0 0 chr6 132668436 132668470 -49746772 + (TATAA)n Simple_repeat Simple_repeat 1 34 0 1780 170 14 3 chr6 132668475 132668763 -49746479 + AluJo SINE Alu 4 294 -18 950 217 51 125 chr6 132669630 132670021 -49745221 - MLT1A2 LTR MaLR 0 374 13 1503 178 125 0 chr6 132670300 132670621 -49744621 + MER46B DNA MER2_type 1 236 0 522 289 91 45 chr6 132670994 132671281 -49743961 - LTR16B LTR ERVL -160 304 5 603 353 16 34 chr6 132671392 132671834 -49743408 - ERVL LTR ERVL -384 5380 4947 22 0 0 0 chr6 132673465 132673487 -49741755 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr6 132673778 132673820 -49741422 + AT_rich Low_complexity Low_complexity 1 42 0 293 168 32 44 chr6 132676834 132677113 -49738129 + AluJo SINE Alu 1 302 0 1041 289 36 21 chr6 132677456 132677788 -49737454 + LTR16A LTR ERVL 108 444 -6 405 301 104 6 chr6 132678017 132678180 -49737062 + HERV16 LTR ERVL 270 448 -4548 1367 319 22 28 chr6 132678339 132678885 -49736357 + HERV16 LTR ERVL 856 1399 -3597 581 67 0 22 chr6 132678885 132678975 -49736267 + L1PA4 LINE L1 6068 6155 0 1367 319 22 28 chr6 132678975 132679027 -49736215 + HERV16 LTR ERVL 1399 1450 -3546 1919 325 54 33 chr6 132679243 132679512 -49735730 + HERV16 LTR ERVL 2053 2315 -3026 856 257 46 18 chr6 132679512 132679730 -49735512 + MER58A DNA MER1_type 1 224 0 1919 325 54 33 chr6 132679730 132680392 -49734850 + HERV16 LTR ERVL 2315 2961 -2380 1770 96 0 13 chr6 132680392 132680631 -49734611 - AluSg/x SINE Alu -6 304 69 1919 325 54 33 chr6 132680631 132680894 -49734348 + HERV16 LTR ERVL 2961 3319 -2022 3883 123 25 17 chr6 132680894 132681538 -49733704 + MER39B LTR ERV1 3 651 -2 1919 325 54 33 chr6 132681538 132681567 -49733675 + HERV16 LTR ERVL 3319 3346 -1995 723 270 76 84 chr6 132682747 132683221 -49732021 - MLT1H1 LTR MaLR 0 555 86 296 206 199 8 chr6 132683813 132683993 -49731249 + MER106B DNA MER1_type 6 1054 -5 1876 259 23 7 chr6 132684203 132684766 -49730476 - L1M4 LINE L1 -837 5309 4738 782 244 62 41 chr6 132684766 132685091 -49730151 - MLT1A1 LTR MaLR 0 396 1 1446 271 21 10 chr6 132685092 132685608 -49729634 - L1M4 LINE L1 -1405 4741 4220 1377 246 133 58 chr6 132685608 132686496 -49728746 + LTR1B LTR ERV1 1 1020 0 2025 285 29 16 chr6 132686496 132687317 -49727925 - L1M4 LINE L1 -1923 4223 3392 1622 357 34 34 chr6 132687558 132688560 -49726682 + HERV16 LTR ERVL 4146 5147 -617 575 238 181 52 chr6 132688914 132689317 -49725925 + LTR16A1 LTR ERVL 1 455 -2 1361 133 0 0 chr6 132689779 132689974 -49725268 - AluJb SINE Alu -13 299 105 203 301 90 48 chr6 132690609 132690775 -49724467 + MIR SINE MIR 36 208 -54 6067 164 22 21 chr6 132691393 132692639 -49722603 - L1 LINE L1 -1126 5020 3773 885 110 11 22 chr6 132692652 132692834 -49722408 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1519 196 4 14 chr6 132692834 132693114 -49722128 - AluJo SINE Alu -33 279 3 271 270 47 28 chr6 132693277 132693332 -49721910 + L1ME4a LINE L1 5706 5758 -363 2127 157 71 12 chr6 132693332 132693479 -49721763 + MER65A LTR ERV1 1 138 -307 261 0 0 0 chr6 132693479 132693508 -49721734 + (CA)n Simple_repeat Simple_repeat 2 30 0 2127 157 71 12 chr6 132693508 132693780 -49721462 + MER65A LTR ERV1 138 445 0 271 270 47 28 chr6 132693780 132693935 -49721307 + L1ME4a LINE L1 5758 5920 -201 276 188 0 0 chr6 132695022 132695070 -49720172 + LTR33A LTR ERVL 473 520 -3 424 244 6 6 chr6 132695230 132695390 -49719852 + (TA)n Simple_repeat Simple_repeat 1 160 0 2394 52 0 23 chr6 132695805 132696110 -49719132 + AluY SINE Alu 1 298 -13 2481 54 0 0 chr6 132696267 132696564 -49718678 + AluY SINE Alu 1 297 -14 1961 142 3 3 chr6 132696846 132697149 -49718093 - AluSq SINE Alu -4 309 7 696 296 164 14 chr6 132697399 132697686 -49717556 + L2 LINE L2 2647 2976 -338 1047 208 43 13 chr6 132697697 132697928 -49717314 - MLT1F LTR MaLR -12 530 293 2022 140 16 0 chr6 132697967 132698274 -49716968 + AluSx SINE Alu 1 312 0 662 230 73 38 chr6 132699117 132699486 -49715756 + L1ME LINE L1 4300 4681 -1465 622 177 17 23 chr6 132699747 132699922 -49715320 + GA-rich Low_complexity Low_complexity 3 176 0 31 0 0 0 chr6 132699997 132700028 -49715214 + AT_rich Low_complexity Low_complexity 1 31 0 392 270 101 6 chr6 132700215 132700393 -49714849 + L1ME LINE L1 5267 5461 -709 971 264 33 7 chr6 132700549 132700825 -49714417 + MER93a LTR ERV1 120 402 0 438 342 59 9 chr6 132700843 132701165 -49714077 + L1ME LINE L1 5485 5822 -348 2043 130 0 10 chr6 132701300 132701600 -49713642 + AluSx SINE Alu 1 297 -15 2527 97 40 0 chr6 132701644 132701994 -49713248 + THE1B LTR MaLR 1 364 0 4844 167 37 7 chr6 132702093 132703388 -49711854 + L1PB4 LINE L1 4819 6156 0 285 29 0 0 chr6 132703519 132703553 -49711689 + (CA)n Simple_repeat Simple_repeat 2 35 0 2494 188 27 39 chr6 132704204 132704327 -49710915 - L1MC3 LINE L1 -7 7778 7655 2013 137 3 3 chr6 132704327 132704620 -49710622 - AluSx SINE Alu -17 295 3 2494 188 27 39 chr6 132704620 132705091 -49710151 - L1MC3 LINE L1 -130 7655 7191 242 232 43 29 chr6 132705091 132705160 -49710082 - MLT1F1 LTR MaLR -456 111 42 532 127 136 0 chr6 132705163 132705281 -49709961 - L1MC3 LINE L1 -685 7100 6967 1798 192 14 24 chr6 132705281 132705650 -49709592 + MLT1A1 LTR MaLR 1 365 0 615 209 23 37 chr6 132705678 132705893 -49709349 + HAL1 LINE L1 984 1195 -1312 775 136 34 0 chr6 132705967 132706085 -49709157 + MLT1A1 LTR MaLR 244 365 0 7450 187 34 50 chr6 132706085 132706991 -49708251 - L1MC3 LINE L1 -743 5403 6110 544 100 0 0 chr6 132706991 132707071 -49708171 + MADE1 DNA Mariner 1 80 0 7450 187 34 50 chr6 132707071 132708190 -49707052 - L1MC3 LINE L1 -35 6111 4976 393 39 0 0 chr6 132708224 132708275 -49706967 + (TG)n Simple_repeat Simple_repeat 2 52 0 648 269 75 40 chr6 132710120 132710321 -49704921 - MIR SINE MIR -11 251 44 235 267 133 48 chr6 132710367 132710472 -49704770 - MIR SINE MIR -108 154 41 676 220 0 0 chr6 132711142 132711260 -49703982 + FLAM_A SINE Alu 1 118 -15 276 200 0 0 chr6 132711260 132711320 -49703922 + (TA)n Simple_repeat Simple_repeat 1 60 0 26 30 0 0 chr6 132711736 132711769 -49703473 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr6 132712942 132712970 -49702272 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 132713494 132713518 -49701724 + AT_rich Low_complexity Low_complexity 1 24 0 414 57 0 0 chr6 132714873 132714926 -49700316 + (TG)n Simple_repeat Simple_repeat 2 54 0 1858 95 76 0 chr6 132715122 132715405 -49699837 + AluSp SINE Alu 1 303 0 562 284 52 19 chr6 132715408 132715619 -49699623 - L2 LINE L2 0 3313 3096 398 302 244 5 chr6 132716463 132716668 -49698574 - MIR SINE MIR 0 262 9 30 27 0 0 chr6 132716783 132716820 -49698422 + AT_rich Low_complexity Low_complexity 1 37 0 262 236 42 0 chr6 132716858 132716930 -49698312 + CT-rich Low_complexity Low_complexity 4 78 0 411 293 119 45 chr6 132717271 132717356 -49697886 - L2 LINE L2 0 3313 3236 1241 133 9 26 chr6 132717356 132717589 -49697653 + L1MA4 LINE L1 6061 6289 -11 411 293 119 45 chr6 132717589 132717814 -49697428 - L2 LINE L2 -77 3236 2980 322 146 18 0 chr6 132717825 132717880 -49697362 - MER58 DNA MER1_type -9 2411 2356 518 219 0 42 chr6 132718025 132718144 -49697098 - MER5B DNA MER1_type 0 178 65 345 232 85 0 chr6 132718147 132718229 -49697013 + MER81 DNA DNA 1 89 -25 577 282 53 31 chr6 132718289 132718516 -49696726 - L2 LINE L2 -519 2795 2564 1348 207 49 68 chr6 132718521 132718676 -49696566 + MLT1A2 LTR MaLR 15 171 -203 222 37 0 0 chr6 132718676 132718703 -49696539 + (TC)n Simple_repeat Simple_repeat 2 28 0 1348 207 49 68 chr6 132718703 132718914 -49696328 + MLT1A2 LTR MaLR 171 374 0 500 331 151 24 chr6 132718914 132719412 -49695830 - L2 LINE L2 -747 2567 2007 2271 61 0 79 chr6 132719538 132719868 -49695374 - AluY SINE Alu -7 304 1 3614 226 64 21 chr6 132719930 132721999 -49693243 - L1MD2 LINE L1 -92 6527 4380 1875 190 15 43 chr6 132722004 132722399 -49692843 - MLT1B LTR MaLR -6 384 1 5231 239 56 27 chr6 132722399 132723174 -49692068 - L1MD2 LINE L1 -2022 4384 3633 1374 206 25 3 chr6 132723174 132723456 -49691786 - AluJb SINE Alu -24 288 1 5231 239 56 27 chr6 132723456 132726321 -49688921 - L1MD2 LINE L1 -2773 3633 659 217 209 169 61 chr6 132726709 132726857 -49688385 - L2 LINE L2 -109 3204 3041 2168 112 26 52 chr6 132726892 132726934 -49688308 - THE1C LTR MaLR 0 375 333 2723 22 0 3 chr6 132726934 132727245 -49687997 + AluY SINE Alu 1 310 -1 2168 112 26 52 chr6 132727245 132727587 -49687655 - THE1C LTR MaLR -42 333 1 189 195 24 0 chr6 132727587 132727628 -49687614 - L2 LINE L2 -362 2910 2869 1699 175 3 7 chr6 132728205 132728490 -49686752 + AluJo SINE Alu 5 288 -24 457 298 183 10 chr6 132728613 132728821 -49686421 - MIR SINE MIR -14 248 5 21 0 0 0 chr6 132728901 132728922 -49686320 + AT_rich Low_complexity Low_complexity 1 21 0 189 388 16 16 chr6 132729508 132729629 -49685613 + MIR SINE MIR 12 132 -130 397 353 8 0 chr6 132729718 132729840 -49685402 + L2 LINE L2 2585 2707 -607 631 310 185 26 chr6 132729875 132730681 -49684561 - L2 LINE L2 -631 2683 1750 682 218 61 0 chr6 132731061 132731226 -49684016 - MER96B DNA MER1_type? -241 176 2 1679 135 82 0 chr6 132731799 132732080 -49683162 - AluSx SINE Alu -8 304 1 29 0 0 0 chr6 132732431 132732460 -49682782 + AT_rich Low_complexity Low_complexity 1 29 0 785 254 47 4 chr6 132733059 132733315 -49681927 + Charlie1 DNA MER1_type 2344 2610 -151 239 101 58 29 chr6 132733299 132733368 -49681874 + Charlie1 DNA MER1_type 2547 2617 -144 * 1850 178 42 38 chr6 132733370 132733914 -49681328 - MLT2A2 LTR ERVL 0 554 3 494 168 160 0 chr6 132733921 132734040 -49681202 + Charlie1 DNA MER1_type 2616 2753 -8 1774 190 0 3 chr6 132734041 132734351 -49680891 + AluJb SINE Alu 3 311 -1 927 280 28 56 chr6 132736128 132736556 -49678686 - LTR16A LTR ERVL -13 437 22 1868 191 100 123 chr6 132736683 132737425 -49677817 - LTR8A LTR ERV1 -2 725 1 1493 189 0 4 chr6 132737579 132737844 -49677398 + MER49 LTR ERV1 15 278 -645 1581 223 19 21 chr6 132737864 132738241 -49677001 + MER4D LTR ERV1 528 903 0 1466 131 207 13 chr6 132738245 132738559 -49676683 + THE1C LTR MaLR 1 375 0 829 345 64 38 chr6 132738560 132739275 -49675967 - ERVL LTR ERVL -513 5251 4518 985 120 0 0 chr6 132739309 132739442 -49675800 + AluSq/x SINE Alu 1 133 -180 879 341 46 19 chr6 132739504 132739935 -49675307 - ERVL LTR ERVL -1330 4324 3882 234 0 0 0 chr6 132739985 132740011 -49675231 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1561 349 27 36 chr6 132740011 132740983 -49674259 - ERVL LTR ERVL -1855 3799 2837 2033 297 103 45 chr6 132741025 132742329 -49672913 + L2 LINE L2 1938 3313 0 556 307 71 9 chr6 132742950 132743175 -49672067 - MIR SINE MIR -17 245 7 2044 161 11 23 chr6 132743429 132743778 -49671464 + MER2 DNA MER2_type 1 345 0 532 204 18 9 chr6 132744722 132744835 -49670407 - FLAM_A SINE Alu -18 115 2 461 124 19 0 chr6 132745150 132745255 -49669987 + (TCTG)n Simple_repeat Simple_repeat 4 110 0 1181 309 75 11 chr6 132745265 132745705 -49669537 + L2 LINE L2 1853 2320 -994 273 273 15 0 chr6 132745719 132745785 -49669457 + L2 LINE L2 3247 3313 0 203 250 0 0 chr6 132747272 132747320 -49667922 + (TG)n Simple_repeat Simple_repeat 2 49 0 195 271 56 65 chr6 132747466 132747573 -49667669 - L2 LINE L2 -1130 2184 2079 398 202 34 11 chr6 132747710 132747799 -49667443 + MER94 DNA DNA 3 93 -41 382 332 168 5 chr6 132748139 132748329 -49666913 + MIR SINE MIR 23 243 -19 734 324 81 66 chr6 132748410 132749447 -49665795 + L2 LINE L2 2244 3296 -17 1227 150 0 93 chr6 132749777 132750023 -49665219 - AluJo SINE Alu -6 306 84 455 328 32 26 chr6 132752381 132752570 -49662672 - MIR SINE MIR -51 211 22 586 307 45 5 chr6 132752633 132752835 -49662407 + MIR SINE MIR 48 257 -5 21 0 0 0 chr6 132752983 132753004 -49662238 + AT_rich Low_complexity Low_complexity 1 21 0 1368 229 13 26 chr6 132753011 132753313 -49661929 + AluJo SINE Alu 1 298 -4 923 146 51 6 chr6 132753644 132753802 -49661440 - MSTA LTR MaLR -49 379 215 209 56 0 28 chr6 132754010 132754046 -49661196 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 446 216 26 17 chr6 132754666 132754782 -49660460 + LTR34 LTR ERV1 1 117 -547 1175 205 97 115 chr6 132754860 132755356 -49659886 + LTR34 LTR ERV1 136 695 -4 234 327 151 6 chr6 132755773 132755932 -49659310 + L2 LINE L2 2717 2898 -416 2176 246 72 7 chr6 132757901 132758446 -49656796 + MLT1G LTR MaLR 10 589 -1 26 0 0 0 chr6 132758603 132758629 -49656613 + AT_rich Low_complexity Low_complexity 1 26 0 322 287 91 53 chr6 132759175 132759384 -49655858 + L1ME4a LINE L1 5477 5693 -428 1377 225 118 57 chr6 132759429 132759905 -49655337 - MLT1D LTR MaLR 0 505 1 1936 73 71 14 chr6 132760036 132760354 -49654888 + MLT2A1 LTR ERVL 1 399 -45 369 174 0 0 chr6 132760359 132760428 -49654814 + (TA)n Simple_repeat Simple_repeat 2 70 0 246 250 0 22 chr6 132760435 132760527 -49654715 - L1MC4 LINE L1 -1339 6703 6614 * 258 289 0 0 chr6 132760449 132760539 -49654703 + L1MC4 LINE L1 6614 6703 -1339 303 132 0 0 chr6 132760552 132760605 -49654637 + MLT2A1 LTR ERVL 392 444 0 4966 72 3 0 chr6 132760605 132761234 -49654008 + HERVL-A1-A1 LTR ERVL 1 631 -5023 29834 79 12 0 chr6 132761240 132765253 -49649989 + HERVL-A1-A1 LTR ERVL 1154 5238 -416 288 53 0 0 chr6 132765253 132765291 -49649951 + (CA)n Simple_repeat Simple_repeat 2 39 0 29834 79 12 0 chr6 132765291 132765714 -49649528 + HERVL-A1-A1 LTR ERVL 5238 5654 0 2984 82 0 0 chr6 132765714 132766118 -49649124 + MLT2A1 LTR ERVL 1 404 -40 292 75 19 19 chr6 132766118 132766171 -49649071 + (TA)n Simple_repeat Simple_repeat 2 54 0 292 88 59 88 chr6 132766171 132766239 -49649003 + MLT2A1 LTR ERVL 379 444 0 684 277 35 20 chr6 132766239 132766441 -49648801 - MIR SINE MIR -40 222 18 304 330 0 9 chr6 132766441 132766553 -49648689 + L1ME4a LINE L1 5836 5946 -175 624 81 0 0 chr6 132766731 132766817 -49648425 + L1MA3 LINE L1 6214 6299 -6 341 346 73 30 chr6 132767544 132767778 -49647464 + MIR SINE MIR 3 246 -16 1161 238 43 10 chr6 132767849 132768151 -49647091 - LTR16C LTR ERVL 0 491 180 411 293 105 91 chr6 132769954 132770558 -49644684 - L1M2 LINE L1 -5897 952 588 186 43 0 0 chr6 132770558 132770581 -49644661 + (CCG)n Simple_repeat Simple_repeat 3 25 0 411 293 105 91 chr6 132770581 132770772 -49644470 - L1M2 LINE L1 -6261 588 401 22 35 0 0 chr6 132774586 132774615 -49640627 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 132775428 132775456 -49639786 + AT_rich Low_complexity Low_complexity 1 28 0 507 321 72 24 chr6 132776576 132776825 -49638417 - MIR SINE MIR 0 262 2 22 35 0 0 chr6 132777185 132777214 -49638028 + AT_rich Low_complexity Low_complexity 1 29 0 224 122 24 0 chr6 132777264 132777305 -49637937 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 873 219 28 6 chr6 132777434 132777612 -49637630 - MER5A DNA MER1_type -7 182 1 246 62 0 0 chr6 132777986 132778018 -49637224 + (GA)n Simple_repeat Simple_repeat 1 32 0 204 272 69 14 chr6 132778091 132778169 -49637073 + MIR SINE MIR 73 153 -62 303 247 26 0 chr6 132778618 132778695 -49636547 - MER103 DNA DNA -59 107 29 1893 146 21 0 chr6 132780081 132780361 -49634881 + AluSx SINE Alu 1 286 -26 210 309 41 10 chr6 132782298 132782395 -49632847 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 679 205 41 29 chr6 132783763 132783934 -49631308 - MER20 DNA MER1_type -5 214 42 302 329 14 68 chr6 132784133 132784279 -49630963 + MER5B DNA MER1_type 27 164 -14 22 0 0 0 chr6 132784852 132784874 -49630368 + AT_rich Low_complexity Low_complexity 1 22 0 423 0 0 0 chr6 132784906 132784953 -49630289 + (CA)n Simple_repeat Simple_repeat 2 48 0 488 284 180 14 chr6 132789252 132789463 -49625779 + MIR SINE MIR 5 250 -12 222 347 53 13 chr6 132790526 132790601 -49624641 + MIR SINE MIR 21 98 -110 1240 57 0 0 chr6 132791141 132791299 -49623943 + L1PA8 LINE L1 6015 6172 0 1603 190 79 12 chr6 132791495 132791837 -49623405 - MLT1A1 LTR MaLR 0 365 1 4676 150 34 2 chr6 132792891 132793757 -49621485 - L1MB3 LINE L1 0 6183 5291 180 0 0 0 chr6 132794428 132794448 -49620794 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 182 36 0 36 chr6 132794447 132794475 -49620767 + (TA)n Simple_repeat Simple_repeat 1 27 0 264 346 173 13 chr6 132794570 132794807 -49620435 + L2 LINE L2 2935 3209 -63 379 300 85 67 chr6 132795108 132795453 -49619789 + L2 LINE L2 2719 3078 -194 229 250 0 0 chr6 132795518 132795566 -49619676 + L2 LINE L2 3261 3308 -5 431 332 11 16 chr6 132795727 132795917 -49619325 + L2 LINE L2 2150 2338 -976 379 255 47 27 chr6 132795920 132796069 -49619173 - MLT1J2 LTR MaLR 0 450 299 450 303 138 49 chr6 132796607 132797079 -49618163 + L2 LINE L2 2444 2957 -357 293 281 86 31 chr6 132797277 132797405 -49617837 + L2 LINE L2 3138 3272 0 23 33 0 0 chr6 132797818 132797848 -49617394 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 132798053 132798075 -49617167 + AT_rich Low_complexity Low_complexity 1 22 0 5427 210 43 25 chr6 132798075 132798201 -49617041 - L1MC1 LINE L1 -9 6324 6202 2519 62 3 0 chr6 132798201 132798505 -49616737 - AluY SINE Alu -6 305 1 5427 210 43 25 chr6 132798505 132800243 -49614999 - L1MC1 LINE L1 -131 6202 4496 315 0 0 0 chr6 132800243 132800278 -49614964 + (TG)n Simple_repeat Simple_repeat 2 36 0 2140 100 21 0 chr6 132800288 132800577 -49614665 - AluSg SINE Alu -15 295 1 5427 210 43 25 chr6 132800577 132800718 -49614524 - L1MC1 LINE L1 -1845 4488 4351 2159 115 0 0 chr6 132800718 132801006 -49614236 - AluSx SINE Alu -24 288 1 5427 210 43 25 chr6 132801006 132801659 -49613583 - L1MC1 LINE L1 -1982 4351 3604 2706 191 24 44 chr6 132802612 132803422 -49611820 + L1MD3 LINE L1 6975 7995 0 1069 259 117 35 chr6 132803834 132804263 -49610979 + L2 LINE L2 2333 2796 -518 21 36 0 0 chr6 132804993 132805021 -49610221 + AT_rich Low_complexity Low_complexity 1 28 0 1583 226 21 29 chr6 132808738 132809114 -49606128 - MLT1A2 LTR MaLR -1 373 1 1794 200 130 78 chr6 132809506 132810221 -49605021 - LTR1B LTR ERV1 -74 752 1 1017 196 130 62 chr6 132810301 132810754 -49604488 - LTR48 LTR ERV1 -302 485 2 1182 210 8 25 chr6 132812082 132812325 -49602917 - MER8 DNA MER2_type 0 239 1 242 116 23 0 chr6 132813378 132813421 -49601821 + (CA)n Simple_repeat Simple_repeat 1 44 0 214 194 194 0 chr6 132813435 132813502 -49601740 - L2 LINE L2 -2 3270 3191 235 326 181 7 chr6 132814345 132814483 -49600759 - MER5B DNA MER1_type -16 162 1 2353 121 36 3 chr6 132814872 132815235 -49600007 + THE1C LTR MaLR 1 375 0 559 333 48 36 chr6 132815811 132816225 -49599017 - LTR16C LTR ERVL -14 477 59 252 154 0 0 chr6 132816462 132816501 -49598741 - Alu SINE Alu -13 289 251 710 186 0 21 chr6 132816514 132816659 -49598583 - FLAM_C SINE Alu -1 142 1 220 211 0 0 chr6 132816907 132816945 -49598297 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 1913 172 64 54 chr6 132817144 132817167 -49598075 - L1M2 LINE L1 -743 5403 5382 4100 126 76 7 chr6 132817167 132817796 -49597446 - L1MA8 LINE L1 -6 6285 5593 2195 124 0 3 chr6 132817796 132818102 -49597140 - AluSx SINE Alu -7 305 1 4100 126 76 7 chr6 132818102 132818232 -49597010 - L1MA8 LINE L1 -698 5593 5473 1913 172 64 54 chr6 132818232 132818755 -49596487 - L1M2 LINE L1 -764 5382 4898 1460 144 66 4 chr6 132818753 132819024 -49596218 - L1MA8 LINE L1 -45 6246 5959 * 1988 124 45 13 chr6 132819024 132819338 -49595904 + L1MA8 LINE L1 5609 5932 -359 2357 94 0 0 chr6 132820322 132820621 -49594621 - AluSq SINE Alu -11 302 4 456 311 68 11 chr6 132821100 132821290 -49593952 - MIR SINE MIR -18 244 44 23 0 0 0 chr6 132821772 132821795 -49593447 + AT_rich Low_complexity Low_complexity 1 23 0 393 244 97 34 chr6 132823203 132823379 -49591863 + MER5A DNA MER1_type 2 188 -1 21 36 0 0 chr6 132824046 132824074 -49591168 + AT_rich Low_complexity Low_complexity 1 28 0 2329 89 0 0 chr6 132824672 132824963 -49590279 - AluSx SINE Alu -17 295 5 2214 116 0 3 chr6 132826241 132826542 -49588700 - AluSx SINE Alu -12 300 1 1718 178 4 0 chr6 132826979 132827260 -49587982 - AluJb SINE Alu -29 283 2 227 273 165 33 chr6 132828612 132828771 -49586471 + MIR SINE MIR 38 213 -49 231 312 72 48 chr6 132829415 132829540 -49585702 + L2 LINE L2 3182 3309 -4 1059 244 162 14 chr6 132830919 132831271 -49583971 - L2 LINE L2 0 3313 2910 28 48 0 0 chr6 132831275 132831317 -49583925 + AT_rich Low_complexity Low_complexity 1 42 0 266 308 111 39 chr6 132832776 132832983 -49582259 + L2 LINE L2 1711 1945 -1369 2452 67 0 0 chr6 132832983 132833281 -49581961 - AluY SINE Alu -13 298 1 266 308 111 39 chr6 132833281 132833352 -49581890 + L2 LINE L2 1945 2009 -1305 273 240 182 19 chr6 132834023 132834177 -49581065 + MIR SINE MIR 81 259 -3 2514 72 0 0 chr6 132834437 132834742 -49580500 - AluY SINE Alu -6 305 1 759 246 52 111 chr6 132836649 132837035 -49578207 - L2 LINE L2 -8 3305 2943 414 302 101 16 chr6 132837033 132837222 -49578020 + MIR SINE MIR 57 261 -1 * 1811 271 103 12 chr6 132837494 132838354 -49576888 - HAL1 LINE L1 -82 2425 1487 24 67 0 0 chr6 132838355 132838400 -49576842 + AT_rich Low_complexity Low_complexity 1 45 0 29 60 0 0 chr6 132838658 132838708 -49576534 + AT_rich Low_complexity Low_complexity 1 50 0 571 294 127 50 chr6 132838720 132839176 -49576066 - LTR16C LTR ERVL 0 491 1 562 279 57 48 chr6 132839189 132839522 -49575720 + Tigger8 DNA MER2_type 301 636 -30 764 310 134 22 chr6 132839537 132840354 -49574888 - L2 LINE L2 -9 3304 2406 674 230 100 93 chr6 132841310 132841461 -49573781 - L1ME4a LINE L1 -3 6118 5970 255 61 0 0 chr6 132841461 132841494 -49573748 + (CATA)n Simple_repeat Simple_repeat 3 35 0 674 230 100 93 chr6 132841494 132841882 -49573360 - L1ME4a LINE L1 -151 5970 5575 270 285 35 12 chr6 132841913 132842085 -49573157 - L1ME4a LINE L1 -2330 5478 5303 26 30 0 0 chr6 132842372 132842405 -49572837 + AT_rich Low_complexity Low_complexity 1 33 0 200 132 0 26 chr6 132842461 132842499 -49572743 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2166 149 84 63 chr6 132842959 132843468 -49571774 - MLT2B1 LTR ERVL 0 520 1 295 314 59 25 chr6 132843800 132844004 -49571238 - L1ME4a LINE L1 -2196 3950 3740 23 33 0 0 chr6 132844425 132844455 -49570787 + AT_rich Low_complexity Low_complexity 1 30 0 2117 120 3 0 chr6 132844521 132844813 -49570429 + AluSp SINE Alu 2 294 -19 409 305 126 58 chr6 132845991 132846225 -49569017 - MLT1J2 LTR MaLR -21 429 162 3947 163 90 14 chr6 132846225 132846962 -49568280 + MER54B LTR ERVL 1 793 0 409 305 126 58 chr6 132846962 132847075 -49568167 - MLT1J2 LTR MaLR -288 162 58 1919 124 0 0 chr6 132847629 132847895 -49567347 - AluSq SINE Alu -45 268 3 22 35 0 0 chr6 132848484 132848513 -49566729 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr6 132848748 132848781 -49566461 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 132849121 132849150 -49566092 + AT_rich Low_complexity Low_complexity 1 29 0 204 158 0 0 chr6 132849540 132849578 -49565664 + (TG)n Simple_repeat Simple_repeat 2 39 0 1530 156 112 21 chr6 132849591 132849731 -49565511 + MSTA LTR MaLR 1 127 -301 2438 56 0 3 chr6 132849731 132850019 -49565223 - AluY SINE Alu -23 288 2 1530 156 112 21 chr6 132850019 132850217 -49565025 + MSTA LTR MaLR 127 370 -58 31 0 0 0 chr6 132850217 132850248 -49564994 + AT_rich Low_complexity Low_complexity 1 31 0 1330 62 0 0 chr6 132850332 132850493 -49564749 + AluY SINE Alu 144 304 -7 2200 78 26 0 chr6 132850534 132850841 -49564401 - L1PA13 LINE L1 -6 6157 5843 279 305 135 8 chr6 132852681 132853056 -49562186 + L1ME4a LINE L1 5496 5984 -137 325 303 121 23 chr6 132854199 132854331 -49560911 - MIR3 SINE MIR -9 199 55 858 274 34 4 chr6 132854399 132854633 -49560609 + MIR SINE MIR 6 246 -16 394 308 32 16 chr6 132856673 132856858 -49558384 - MLT1L LTR MaLR -52 563 376 226 250 40 13 chr6 132857059 132857135 -49558107 - MLT1L LTR MaLR -531 84 7 3378 164 26 50 chr6 132857171 132857925 -49557317 + L1MB4 LINE L1 5444 6179 -1 1887 111 91 26 chr6 132858827 132859179 -49556063 - THE1C LTR MaLR 0 375 1 1309 218 17 37 chr6 132859773 132860067 -49555175 - AluJo SINE Alu -24 288 1 267 319 25 94 chr6 132860071 132860231 -49555011 - MIR3 SINE MIR -13 195 47 22 56 0 0 chr6 132860240 132860276 -49554966 + AT_rich Low_complexity Low_complexity 1 36 0 195 138 31 46 chr6 132861687 132861752 -49553490 + CT-rich Low_complexity Low_complexity 2 65 0 309 100 0 0 chr6 132861752 132861802 -49553440 + (CA)n Simple_repeat Simple_repeat 1 50 0 240 35 0 0 chr6 132861802 132861831 -49553411 + (CAG)n Simple_repeat Simple_repeat 3 31 0 259 341 70 16 chr6 132862734 132862863 -49552379 - MIR SINE MIR -3 259 124 244 256 110 12 chr6 132863113 132863195 -49552047 - MIR SINE MIR -91 171 82 301 324 138 51 chr6 132863676 132863951 -49551291 + L2 LINE L2 2664 2962 -352 196 246 16 49 chr6 132864250 132864311 -49550931 + L2 LINE L2 3204 3262 -10 454 331 228 25 chr6 132864391 132865074 -49550168 - L3 LINE CR1 -207 1370 549 21 0 0 0 chr6 132865112 132865133 -49550109 + AT_rich Low_complexity Low_complexity 1 21 0 226 323 40 65 chr6 132865681 132865805 -49549437 - MIR SINE MIR -63 145 31 198 103 0 0 chr6 132865858 132865887 -49549355 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 204 323 30 0 chr6 132865892 132865991 -49549251 + CT-rich Low_complexity Low_complexity 4 105 0 2287 94 0 10 chr6 132866754 132867062 -49548180 + AluSc SINE Alu 5 309 0 333 0 0 0 chr6 132867093 132867130 -49548112 + (T)n Simple_repeat Simple_repeat 1 37 0 27 0 0 0 chr6 132867886 132867913 -49547329 + AT_rich Low_complexity Low_complexity 1 27 0 2322 95 3 9 chr6 132870506 132870821 -49544421 + AluSp SINE Alu 1 313 0 1993 223 54 40 chr6 132871657 132872154 -49543088 - LTR40a LTR ERVL 0 519 16 1738 162 3 32 chr6 132872844 132873153 -49542089 - AluJb SINE Alu -12 300 1 434 339 16 26 chr6 132873932 132874121 -49541121 - MIR3 SINE MIR -2 206 20 1454 249 91 68 chr6 132874125 132874835 -49540407 - HsTC2c DNA Tc2 0 729 4 445 302 112 61 chr6 132875674 132876473 -49538769 + L2 LINE L2 2467 3313 0 2294 99 0 7 chr6 132877060 132877364 -49537878 - AluSc SINE Alu -7 302 1 2369 137 47 24 chr6 132877754 132878163 -49537079 - MSTB1 LTR MaLR 0 432 15 435 211 0 0 chr6 132878327 132878422 -49536820 + (CATA)n Simple_repeat Simple_repeat 2 96 0 30 77 0 0 chr6 132878827 132878892 -49536350 + AT_rich Low_complexity Low_complexity 1 65 0 1363 135 55 21 chr6 132879170 132879407 -49535835 + MSTB1 LTR MaLR 188 432 0 325 244 49 12 chr6 132880490 132880572 -49534670 - MIR SINE MIR -10 252 168 908 250 15 0 chr6 132880573 132880773 -49534469 - MLT1B LTR MaLR 0 390 188 463 169 8 8 chr6 132880775 132880905 -49534337 + GA-rich Low_complexity Low_complexity 1 130 0 493 285 32 25 chr6 132880952 132881110 -49534132 - MLT1B LTR MaLR -186 188 30 457 281 37 18 chr6 132881114 132881278 -49533964 - MIR SINE MIR -82 180 14 361 298 25 50 chr6 132881511 132881632 -49533610 + MER5A DNA MER1_type 70 187 -2 1814 131 3 38 chr6 132882829 132883119 -49532123 - AluSx SINE Alu -28 284 5 624 132 7 15 chr6 132883315 132883451 -49531791 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2255 212 100 19 chr6 132884431 132885081 -49530161 - MER63C DNA MER1_type 0 930 228 1135 152 25 0 chr6 132885088 132885285 -49529957 + MLT2D LTR ERVL 1 202 -212 183 100 0 0 chr6 132885532 132885562 -49529680 + (TC)n Simple_repeat Simple_repeat 1 30 0 359 103 0 59 chr6 132885562 132885630 -49529612 + MLT2B1 LTR ERVL 456 519 -1 842 202 37 0 chr6 132885630 132885818 -49529424 - MER63C DNA MER1_type -715 215 21 22 0 0 0 chr6 132885901 132885923 -49529319 + AT_rich Low_complexity Low_complexity 1 22 0 183 330 136 17 chr6 132887785 132887903 -49527339 - L3 LINE CR1 -108 1469 1338 231 344 0 0 chr6 132887986 132888047 -49527195 - L2 LINE L2 -2 3311 3251 208 182 45 0 chr6 132888056 132888100 -49527142 - L3 LINE CR1 -282 1295 1250 974 94 0 0 chr6 132888377 132888505 -49526737 + AluY SINE Alu 168 295 -16 22 0 0 0 chr6 132888797 132888819 -49526423 + AT_rich Low_complexity Low_complexity 1 22 0 363 275 9 28 chr6 132889574 132889683 -49525559 + MIR SINE MIR 80 186 -76 3890 24 0 0 chr6 132890060 132890513 -49524729 + L1PA3 LINE L1 5701 6153 -2 27 0 0 0 chr6 132890513 132890540 -49524702 + AT_rich Low_complexity Low_complexity 1 27 0 274 309 49 0 chr6 132890926 132891007 -49524235 + MIR SINE MIR 66 150 -112 349 293 19 9 chr6 132891197 132891303 -49523939 + MIR3 SINE MIR 88 194 -14 1956 182 3 20 chr6 132892397 132892754 -49522488 - MLT1A1 LTR MaLR 0 365 15 637 301 87 49 chr6 132894122 132894593 -49520649 - MLT1J LTR MaLR -7 504 16 2317 154 0 8 chr6 132894593 132894977 -49520265 + L1PA16 LINE L1 5778 6158 -8 205 366 49 21 chr6 132895055 132895197 -49520045 + L2 LINE L2 3162 3307 -6 959 307 102 38 chr6 132895209 132895736 -49519506 + L1ME3A LINE L1 5525 6085 -85 259 263 42 76 chr6 132895870 132895988 -49519254 + MIR3 SINE MIR 83 196 -12 1426 146 22 0 chr6 132896296 132896522 -49518720 - MER46A DNA MER2_type -4 232 2 186 353 97 50 chr6 132898313 132898851 -49516391 + L2 LINE L2 1679 2241 -1073 2474 65 0 3 chr6 132898967 132899277 -49515965 - AluY SINE Alu -2 309 1 3763 204 65 12 chr6 132899640 132900557 -49514685 - MER45B DNA AcHobo 0 1040 8 26 64 0 0 chr6 132901334 132901381 -49513861 + AT_rich Low_complexity Low_complexity 1 47 0 285 177 32 6 chr6 132901608 132901766 -49513476 + (TA)n Simple_repeat Simple_repeat 2 163 0 313 253 87 40 chr6 132904574 132904724 -49510518 + MLT1J LTR MaLR 373 607 -8 766 98 49 4 chr6 132904957 132905203 -49510039 + (TA)n Simple_repeat Simple_repeat 1 257 0 357 207 29 114 chr6 132906134 132906274 -49508968 + MER112 DNA MER1_type 121 248 -12 386 167 12 0 chr6 132906848 132906932 -49508310 + (TG)n Simple_repeat Simple_repeat 2 86 0 6260 149 46 17 chr6 132906959 132908154 -49507088 - Tigger3b DNA MER2_type 0 1231 2 21 0 0 0 chr6 132908867 132908888 -49506354 + AT_rich Low_complexity Low_complexity 1 21 0 230 259 59 47 chr6 132910105 132910190 -49505052 + MIR SINE MIR 117 202 -60 13688 188 26 27 chr6 132914178 132916814 -49498428 - L1MA4A LINE L1 -4 7001 4363 195 42 0 0 chr6 132916814 132916838 -49498404 + (TG)n Simple_repeat Simple_repeat 1 24 0 13688 188 26 27 chr6 132916838 132921209 -49494033 - L1MA4A LINE L1 -2642 4363 5 264 122 0 0 chr6 132921757 132921798 -49493444 + (A)n Simple_repeat Simple_repeat 1 41 0 1470 212 0 14 chr6 132922151 132922488 -49492754 - AluJo SINE Alu 0 333 1 1635 184 42 50 chr6 132922820 132923200 -49492042 + MLT1B LTR MaLR 3 379 -11 1238 151 10 0 chr6 132923495 132923700 -49491542 - L1PA13 LINE L1 -19 6144 5938 295 290 11 32 chr6 132923918 132924011 -49491231 + L2 LINE L2 3223 3313 0 1098 163 0 49 chr6 132925041 132925244 -49489998 - MLT1A1 LTR MaLR -172 193 1 223 299 214 7 chr6 132925244 132925398 -49489844 + L2 LINE L2 3128 3313 0 423 0 0 0 chr6 132926486 132926533 -49488709 + (TG)n Simple_repeat Simple_repeat 2 48 0 271 275 104 82 chr6 132926556 132926825 -49488417 - Charlie8 DNA MER1_type -2142 275 1 2459 112 26 3 chr6 132929178 132929527 -49485715 + LTR18A LTR ERVL 1 357 0 505 288 147 0 chr6 132930031 132930201 -49485041 + MIR SINE MIR 47 241 -21 21 36 0 0 chr6 132930344 132930372 -49484870 + AT_rich Low_complexity Low_complexity 1 28 0 217 351 61 45 chr6 132931988 132932349 -49482893 + L2 LINE L2 2716 3082 -190 314 306 83 0 chr6 132933355 132933463 -49481779 - L2 LINE L2 -5 3308 3192 238 342 51 72 chr6 132935288 132935525 -49479717 + L2 LINE L2 2944 3175 -97 184 222 127 63 chr6 132935722 132935785 -49479457 + L2 LINE L2 3008 3074 -239 225 233 0 0 chr6 132936119 132936162 -49479080 - MLT1L LTR MaLR -221 394 352 2134 127 0 10 chr6 132937157 132937465 -49477777 + AluSx SINE Alu 1 305 -7 241 301 191 22 chr6 132937571 132937754 -49477488 - L2 LINE L2 -1 3312 3099 41 21 0 0 chr6 132937881 132937929 -49477313 + AT_rich Low_complexity Low_complexity 1 48 0 2177 173 72 5 chr6 132938470 132938875 -49476367 + Tigger2a DNA MER2_type 1 432 -2 2418 169 226 34 chr6 132939101 132939526 -49475716 - L1MC3 LINE L1 -295 7490 7148 195 100 0 0 chr6 132939526 132939556 -49475686 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 2418 169 226 34 chr6 132939556 132939750 -49475492 - L1MC3 LINE L1 -637 7148 6752 342 364 87 0 chr6 132940794 132940967 -49474275 + MIR SINE MIR 62 249 -13 501 290 28 34 chr6 132941022 132941198 -49474044 - MIR SINE MIR -70 192 18 367 306 27 0 chr6 132941729 132941840 -49473402 - MIR SINE MIR -70 192 79 958 286 131 3 chr6 132941860 132942356 -49472886 + L2 LINE L2 2682 3313 0 1044 165 89 18 chr6 132942366 132942597 -49472645 - MSTD LTR MaLR 0 396 103 211 270 67 11 chr6 132943001 132943090 -49472152 - MIR SINE MIR -64 144 51 334 346 60 16 chr6 132943109 132943294 -49471948 + MIR SINE MIR 20 212 -50 1131 276 54 8 chr6 132943498 132943850 -49471392 + LTR33 LTR ERVL 20 387 -134 201 196 18 71 chr6 132944566 132944622 -49470620 - L2 LINE L2 -4 3309 3257 272 31 0 0 chr6 132945363 132945395 -49469847 - L1PA6 LINE L1 -274 5880 5849 2295 65 0 0 chr6 132945395 132945688 -49469554 + L1PA6 LINE L1 5862 6154 0 2019 148 0 0 chr6 132945757 132946070 -49469172 + AluSx SINE Alu 1 313 0 214 355 99 0 chr6 132946656 132946828 -49468414 + L2 LINE L2 2496 2684 -630 230 231 0 15 chr6 132948653 132948718 -49466524 + CT-rich Low_complexity Low_complexity 2 65 0 334 202 11 11 chr6 132949328 132949422 -49465820 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 453 260 181 19 chr6 132950014 132950215 -49465027 + MIR SINE MIR 33 259 -3 1874 183 33 19 chr6 132952283 132952617 -49462625 - MLT1A1 LTR MaLR 0 365 24 2450 101 27 33 chr6 132952617 132952983 -49462259 + THE1B LTR MaLR 1 364 0 1874 183 33 19 chr6 132952983 132953008 -49462234 - MLT1A1 LTR MaLR -341 24 1 570 197 0 0 chr6 132953013 132953165 -49462077 + (TA)n Simple_repeat Simple_repeat 2 153 0 802 249 83 43 chr6 132953165 132953435 -49461807 - MLT2D LTR ERVL -40 480 86 894 196 92 16 chr6 132953784 132953968 -49461274 - AluJo SINE Alu -42 270 73 894 204 0 0 chr6 132954038 132954195 -49461047 + FRAM SINE Alu 10 166 -10 22 35 0 0 chr6 132955966 132955995 -49459247 + AT_rich Low_complexity Low_complexity 1 29 0 2277 90 3 0 chr6 132957640 132957929 -49457313 - AluSc SINE Alu -17 292 3 200 224 17 17 chr6 132958575 132958633 -49456609 + GA-rich Low_complexity Low_complexity 5 62 0 21 0 0 0 chr6 132959424 132959445 -49455797 + AT_rich Low_complexity Low_complexity 1 21 0 257 363 0 0 chr6 132959670 132959761 -49455481 + CT-rich Low_complexity Low_complexity 3 93 0 24 53 0 0 chr6 132960264 132960302 -49454940 + AT_rich Low_complexity Low_complexity 1 38 0 2236 107 3 0 chr6 132960439 132960737 -49454505 - AluSq SINE Alu -14 299 1 250 292 42 42 chr6 132961474 132961642 -49453600 + L1ME LINE L1 5565 5732 -389 2094 108 3 7 chr6 132961647 132961935 -49453307 + AluSq SINE Alu 1 287 -26 321 326 79 37 chr6 132962316 132962506 -49452736 - L2 LINE L2 -223 3049 2852 570 244 35 29 chr6 132963084 132963256 -49451986 + MER5B DNA MER1_type 3 175 -3 260 295 54 39 chr6 132963555 132963684 -49451558 + MIR SINE MIR 119 249 -13 1756 237 21 0 chr6 132963926 132964306 -49450936 - MLT1E3 LTR MaLR 0 624 237 384 248 128 16 chr6 132964377 132964502 -49450740 - MLT1E3 LTR MaLR -511 143 5 342 45 0 0 chr6 132965405 132965449 -49449793 + (TG)n Simple_repeat Simple_repeat 2 45 0 1302 216 17 14 chr6 132965719 132966011 -49449231 + Charlie2 DNA MER1_type 1854 2146 -716 1077 133 25 79 chr6 132966135 132966376 -49448866 - THE1C LTR MaLR -140 235 8 500 246 50 6 chr6 132966389 132966568 -49448674 + Charlie2 DNA MER1_type 2647 2833 -29 22 0 0 0 chr6 132967649 132967671 -49447571 + AT_rich Low_complexity Low_complexity 1 22 0 2243 80 0 7 chr6 132967671 132967957 -49447285 + AluY SINE Alu 1 284 -27 186 43 0 0 chr6 132968514 132968537 -49446705 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 570 319 24 14 chr6 132969018 132969231 -49446011 + MIR SINE MIR 37 251 -11 21 36 0 0 chr6 132969473 132969501 -49445741 + AT_rich Low_complexity Low_complexity 1 28 0 187 309 82 36 chr6 132971168 132971278 -49443964 - L2 LINE L2 -17 3255 3141 2617 55 0 0 chr6 132972453 132972761 -49442481 - AluY SINE Alu -3 308 1 26 0 0 0 chr6 132973194 132973220 -49442022 + AT_rich Low_complexity Low_complexity 1 26 0 259 163 0 0 chr6 132973450 132973499 -49441743 - L1M3 LINE L1 -439 5729 5681 446 135 0 0 chr6 132973513 132973587 -49441655 + L1M2 LINE L1 5709 5782 -530 306 0 0 0 chr6 132973602 132973636 -49441606 + (TG)n Simple_repeat Simple_repeat 1 34 0 222 37 0 0 chr6 132973662 132973689 -49441553 + (TA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr6 132973822 132973851 -49441391 + AT_rich Low_complexity Low_complexity 1 29 0 273 301 40 17 chr6 132974343 132974516 -49440726 - MER104 DNA Tc2 -3 177 1 26 82 0 0 chr6 132974800 132974861 -49440381 + AT_rich Low_complexity Low_complexity 1 61 0 19710 48 3 3 chr6 132976427 132978987 -49436255 - L1P LINE L1 -3584 2562 1 462 340 32 16 chr6 132979375 132979560 -49435682 + MIR SINE MIR 28 215 -47 2151 135 0 0 chr6 132980202 132980505 -49434737 + AluSx SINE Alu 1 303 -9 1506 181 74 93 chr6 132980891 132981366 -49433876 - MLT1C LTR MaLR -1 466 1 310 280 27 27 chr6 132982960 132983110 -49432132 + MARNA DNA Mariner 155 304 -282 970 231 94 22 chr6 132983385 132983705 -49431537 - MER2 DNA MER2_type -1 343 1 387 295 55 33 chr6 132983756 132983939 -49431303 - L1ME LINE L1 -323 5798 5612 284 345 55 9 chr6 132984183 132984293 -49430949 - L2 LINE L2 -22 3250 3136 2318 75 3 10 chr6 132985032 132985324 -49429918 - AluSc SINE Alu -19 290 1 243 189 0 0 chr6 132985637 132985690 -49429552 + CT-rich Low_complexity Low_complexity 4 56 0 23 0 0 0 chr6 132986327 132986350 -49428892 + AT_rich Low_complexity Low_complexity 1 23 0 212 259 25 49 chr6 132987460 132987622 -49427620 + A-rich Low_complexity Low_complexity 3 160 0 5230 167 17 17 chr6 132987674 132988481 -49426761 + L1MB1 LINE L1 3958 4763 -1405 2601 58 0 0 chr6 132988481 132988792 -49426450 + AluY SINE Alu 1 311 0 5230 167 17 17 chr6 132988792 132990014 -49425228 + L1MB1 LINE L1 4763 6167 -1 2360 235 71 71 chr6 132990180 132991148 -49424094 + L1MC5 LINE L1 6652 7622 -339 342 0 0 0 chr6 132991148 132991186 -49424056 + (CA)n Simple_repeat Simple_repeat 2 39 0 2360 235 71 71 chr6 132991186 132991457 -49423785 + L1MC5 LINE L1 7621 7891 -70 1039 163 0 12 chr6 132991742 132991908 -49423334 + FRAM SINE Alu 1 161 -15 219 114 0 0 chr6 132992058 132992093 -49423149 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 637 297 66 66 chr6 132992095 132992415 -49422827 - L2 LINE L2 -9 3263 2944 1739 247 117 31 chr6 132992472 132992629 -49422613 + L2 LINE L2 2325 2467 -846 339 25 0 0 chr6 132992629 132992669 -49422573 + (TG)n Simple_repeat Simple_repeat 2 41 0 1739 247 117 31 chr6 132992669 132993217 -49422025 + L2 LINE L2 2467 3086 -227 1411 244 49 40 chr6 132993238 132993684 -49421558 - MLT1J2 LTR MaLR 0 450 1 682 274 29 67 chr6 132994794 132995108 -49420134 - MLT1J2 LTR MaLR -30 420 119 21 36 0 0 chr6 132995118 132995146 -49420096 + AT_rich Low_complexity Low_complexity 1 28 0 872 279 36 16 chr6 132995497 132995748 -49419494 - MIR SINE MIR 0 262 7 1820 196 0 0 chr6 132996450 132996761 -49418481 - AluJb SINE Alu -1 311 1 469 310 61 61 chr6 132996880 132997109 -49418133 - MIR SINE MIR 0 262 34 27 0 0 0 chr6 132997654 132997681 -49417561 + AT_rich Low_complexity Low_complexity 1 27 0 280 296 227 6 chr6 132997856 132998032 -49417210 + L3b LINE CR1 1110 1324 -259 1707 172 32 0 chr6 132998187 132998472 -49416770 + AluJo SINE Alu 1 294 -18 233 298 0 0 chr6 132999558 132999605 -49415637 - L2 LINE L2 -16 3256 3210 492 345 44 5 chr6 132999629 132999832 -49415410 - MER115 DNA AcHobo -328 365 155 200 200 0 25 chr6 132999982 133000022 -49415220 - MIR SINE MIR -217 45 7 837 185 53 0 chr6 133000149 133000300 -49414942 + FRAM SINE Alu 1 159 -7 35 0 0 0 chr6 133000303 133000338 -49414904 + AT_rich Low_complexity Low_complexity 1 35 0 19127 19 0 0 chr6 133000819 133003948 -49411294 - L1HS LINE L1 0 6155 3027 25 0 0 0 chr6 133003974 133003999 -49411243 + AT_rich Low_complexity Low_complexity 1 25 0 379 267 30 38 chr6 133004171 133004302 -49410940 - L1ME4a LINE L1 -226 5895 5766 2192 95 0 17 chr6 133004457 133004751 -49410491 + AluSc SINE Alu 1 289 -20 1713 99 0 5 chr6 133005064 133005286 -49409956 + AluSq SINE Alu 85 305 -8 434 209 0 35 chr6 133005388 133005474 -49409768 - AluJb SINE Alu -195 117 35 23 0 0 0 chr6 133006472 133006495 -49408747 + AT_rich Low_complexity Low_complexity 1 23 0 198 167 0 0 chr6 133006908 133006944 -49408298 + CT-rich Low_complexity Low_complexity 2 37 0 257 234 0 117 chr6 133007320 133007431 -49407811 + L3 LINE CR1 1197 1294 -283 250 357 20 20 chr6 133007637 133007735 -49407507 + L2 LINE L2 3155 3252 -20 203 276 115 35 chr6 133007772 133007859 -49407383 + L3 LINE CR1 1338 1431 -146 259 244 103 0 chr6 133008953 133009031 -49406211 - MIR3 SINE MIR -32 176 91 2057 136 10 0 chr6 133009453 133009747 -49405495 - AluSx SINE Alu -15 297 1 252 0 0 0 chr6 133009821 133009849 -49405393 + (T)n Simple_repeat Simple_repeat 1 28 0 283 309 3 6 chr6 133009873 133009977 -49405265 + MIR SINE MIR 16 118 -90 180 125 0 0 chr6 133009977 133010009 -49405233 + (TG)n Simple_repeat Simple_repeat 2 33 0 384 349 47 0 chr6 133010180 133010352 -49404890 + MIR SINE MIR 2 181 -81 193 367 0 17 chr6 133011017 133011077 -49404165 + MIR SINE MIR 89 147 -61 23 33 0 0 chr6 133011162 133011192 -49404050 + AT_rich Low_complexity Low_complexity 1 30 0 735 178 0 16 chr6 133011223 133011352 -49403890 + FLAM_C SINE Alu 1 127 -6 2018 103 36 7 chr6 133012898 133013179 -49402063 + AluSc SINE Alu 1 289 -20 2125 108 3 3 chr6 133013247 133013533 -49401709 - AluSx SINE Alu -24 288 3 214 311 135 0 chr6 133013697 133013771 -49401471 - L2 LINE L2 -40 3232 3149 329 250 150 14 chr6 133014276 133014416 -49400826 + MIR SINE MIR 83 241 -21 633 304 9 5 chr6 133016324 133016538 -49398704 - MER20 DNA MER1_type -4 215 1 324 305 130 43 chr6 133016812 133017039 -49398203 + MIR SINE MIR 18 261 -1 1858 204 81 42 chr6 133017539 133018019 -49397223 - MLT1D LTR MaLR 0 505 7 793 141 134 27 chr6 133018680 133018829 -49396413 - FRAM SINE Alu -12 164 1 206 227 0 45 chr6 133018964 133019003 -49396239 + L2 LINE L2 1298 1334 -1980 1944 128 209 14 chr6 133019003 133019361 -49395881 - MSTA LTR MaLR 0 428 1 206 227 0 45 chr6 133019361 133019387 -49395855 + L2 LINE L2 1334 1360 -1954 943 251 90 46 chr6 133019388 133019754 -49395488 + MLT1I LTR MaLR 18 399 -10 1568 271 202 16 chr6 133019754 133020447 -49394795 + L2 LINE L2 1387 2208 -1106 516 62 0 0 chr6 133020450 133020514 -49394728 - MER72 LTR ERV1 0 722 659 767 212 0 4 chr6 133020637 133020921 -49394321 + GA-rich Low_complexity Low_complexity 1 282 0 225 0 0 0 chr6 133021388 133021413 -49393829 + (TG)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr6 133021431 133021453 -49393789 + (TG)n Simple_repeat Simple_repeat 2 23 0 218 345 79 30 chr6 133022965 133023130 -49392112 - L2 LINE L2 -234 3038 2866 2170 100 14 0 chr6 133023503 133023793 -49391449 - AluSx SINE Alu -18 294 1 22 0 0 0 chr6 133023981 133024003 -49391239 + AT_rich Low_complexity Low_complexity 1 22 0 1718 214 41 8 chr6 133024187 133024570 -49390672 - MER110 LTR ERV1 0 491 96 339 117 0 50 chr6 133024570 133024630 -49390612 - MSTB LTR MaLR 0 426 370 820 107 113 20 chr6 133024640 133024790 -49390452 - L1PA16 LINE L1 -1 6165 6002 475 150 12 0 chr6 133025283 133025363 -49389879 + LTR5 LTR ERVK 4 84 -885 1135 160 55 5 chr6 133026548 133026748 -49388494 + MER2 DNA MER2_type 1 210 -135 349 246 0 0 chr6 133026776 133026837 -49388405 + MER2 DNA MER2_type 284 344 -1 191 194 0 0 chr6 133027250 133027286 -49387956 - MIR SINE MIR -4 258 223 824 197 48 57 chr6 133027286 133027526 -49387716 - MIR SINE MIR -13 249 11 523 359 6 0 chr6 133028043 133028199 -49387043 + L3 LINE CR1 954 1110 -467 423 311 82 38 chr6 133029172 133029439 -49385803 + L3 LINE CR1 1297 1575 -2 287 228 106 56 chr6 133030339 133030526 -49384716 + MIR3 SINE MIR 20 242 -20 374 340 57 19 chr6 133031106 133031235 -49384007 + MIR SINE MIR 14 155 -107 1031 258 46 21 chr6 133031235 133031564 -49383678 + MER46C DNA MER2_type 1 337 -1 374 340 57 19 chr6 133031564 133031643 -49383599 + MIR SINE MIR 155 230 -32 638 252 170 4 chr6 133032153 133032383 -49382859 - MLT1C LTR MaLR -141 326 59 851 194 122 0 chr6 133032499 133032679 -49382563 + MIR SINE MIR 40 241 -21 227 54 27 0 chr6 133033362 133033399 -49381843 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 8099 13 0 0 chr6 133033401 133034331 -49380911 - L1HS LINE L1 0 6155 5226 364 242 49 48 chr6 133035391 133035593 -49379649 - L1ME3 LINE L1 0 6170 5965 960 236 160 25 chr6 133035688 133036120 -49379122 - L1MC5 LINE L1 -435 7526 7037 242 338 74 14 chr6 133036113 133036261 -49378981 - L1MC5 LINE L1 -1131 6830 6674 * 291 226 46 154 chr6 133036276 133036471 -49378771 - L1MC4a LINE L1 -1221 6587 6414 281 270 137 33 chr6 133036559 133036866 -49378376 - HAL1b LINE L1 -532 816 478 261 331 60 37 chr6 133037047 133037397 -49377845 - HAL1b LINE L1 -919 429 72 12212 83 5 2 chr6 133037571 133039920 -49375322 - L1PA7 LINE L1 -2 6467 4115 12411 115 23 47 chr6 133039920 133040518 -49374724 - L1PA7 LINE L1 -3697 2764 2153 2316 108 0 3 chr6 133040518 133040832 -49374410 - AluSq SINE Alu 0 313 1 12411 115 23 47 chr6 133040832 133042950 -49372292 - L1PA7 LINE L1 -4308 2153 8 704 114 145 8 chr6 133043234 133043365 -49371877 - L1MA8 LINE L1 0 6291 6143 393 348 135 8 chr6 133043976 133044243 -49370999 + L2 LINE L2 2430 2730 -584 2437 139 53 0 chr6 133048444 133048783 -49366459 - LTR18A LTR ERVL 0 357 1 35210 155 14 21 chr6 133048784 133054432 -49360810 - HERVL18 LTR ERVL 0 6047 443 1174 185 5 14 chr6 133054421 133054643 -49360599 - HERVL18 LTR ERVL -5820 227 8 * 2238 162 53 0 chr6 133054656 133054995 -49360247 - LTR18A LTR ERVL 0 357 1 2373 150 8 3 chr6 133054996 133055355 -49359887 - HERVL18 LTR ERVL 0 6047 5687 283 143 0 0 chr6 133055355 133055397 -49359845 - LTR18A LTR ERVL -315 42 1 192 102 61 0 chr6 133055660 133055709 -49359533 + (TA)n Simple_repeat Simple_repeat 1 52 0 2058 123 0 10 chr6 133056226 133056518 -49358724 - AluSx SINE Alu -23 289 1 2215 173 45 30 chr6 133056703 133056759 -49358483 - Tigger2a DNA MER2_type -2275 433 379 2291 117 0 0 chr6 133056759 133057068 -49358174 + AluSg1 SINE Alu 1 309 0 2215 173 45 30 chr6 133057068 133057438 -49357804 - Tigger2a DNA MER2_type -2329 379 1 1776 149 14 14 chr6 133059036 133059324 -49355918 - AluJo SINE Alu -24 288 1 2754 119 5 11 chr6 133060638 133061015 -49354227 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr6 133061643 133061671 -49353571 + AT_rich Low_complexity Low_complexity 1 28 0 596 237 36 0 chr6 133061682 133061821 -49353421 - MER58B DNA MER1_type -2 339 196 1216 39 11 28 chr6 133061821 133061844 -49353398 + (TTTC)n Simple_repeat Simple_repeat 1 201 0 1216 39 11 28 chr6 133061844 133062026 -49353216 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2183 128 0 3 chr6 133062060 133062373 -49352869 - AluSx SINE Alu 0 312 1 748 200 24 24 chr6 133062375 133062545 -49352697 - MER58B DNA MER1_type -142 199 30 191 283 76 22 chr6 133063344 133063436 -49351806 + L3 LINE CR1 638 734 -843 275 350 92 14 chr6 133063787 133064004 -49351238 + L3b LINE CR1 1104 1337 -246 2097 111 17 7 chr6 133066532 133066829 -49348413 - AluSx SINE Alu -12 300 1 410 289 47 47 chr6 133068371 133068520 -49346722 - MIR3 SINE MIR -28 180 32 451 306 145 5 chr6 133068790 133068983 -49346259 - MIR SINE MIR -20 242 23 24 32 0 0 chr6 133070253 133070284 -49344958 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 133071930 133071951 -49343291 + AT_rich Low_complexity Low_complexity 1 21 0 521 299 7 14 chr6 133072537 133072684 -49342558 + MER5A DNA MER1_type 43 188 -1 22 56 0 0 chr6 133072863 133072899 -49342343 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr6 133073093 133073123 -49342119 + AT_rich Low_complexity Low_complexity 1 30 0 2111 133 0 40 chr6 133073176 133073499 -49341743 - AluSx SINE Alu -2 310 1 22 56 0 0 chr6 133073743 133073779 -49341463 + AT_rich Low_complexity Low_complexity 1 36 0 218 352 148 0 chr6 133075187 133075315 -49339927 + L2 LINE L2 3123 3269 -3 8100 184 19 20 chr6 133076396 133078036 -49337206 + L1PBa LINE L1 2 1640 -5223 * 13286 197 28 14 chr6 133078007 133080012 -49335230 + L1PB1 LINE L1 8 1983 -4225 197 62 0 31 chr6 133080012 133080044 -49335198 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 13286 197 28 14 chr6 133080044 133083243 -49331999 + L1PB1 LINE L1 1983 5402 -806 2184 112 53 34 chr6 133083243 133083600 -49331642 + THE1B LTR MaLR 1 364 0 13286 197 28 14 chr6 133083600 133084048 -49331194 + L1PB1 LINE L1 5402 5842 -366 2470 97 37 0 chr6 133084183 133084533 -49330709 + L1PB1 LINE L1 5843 6205 -3 1501 122 52 0 chr6 133084938 133085059 -49330183 + AluSx SINE Alu 3 116 -196 240 35 0 0 chr6 133085059 133085088 -49330154 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1501 122 52 0 chr6 133085088 133085195 -49330047 + AluSx SINE Alu 116 243 -69 1465 246 90 27 chr6 133085413 133085889 -49329353 + L2 LINE L2 2453 2958 -356 353 239 190 7 chr6 133086694 133086836 -49328406 - MIR3 SINE MIR -7 201 34 616 219 0 17 chr6 133087017 133087136 -49328106 - FLAM_A SINE Alu -25 117 1 1303 117 43 43 chr6 133087356 133087586 -49327656 - MER30 DNA MER1_type 0 230 1 321 26 0 0 chr6 133087762 133087800 -49327442 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1614 205 0 4 chr6 133087803 133088081 -49327161 - AluJb SINE Alu -31 281 5 452 358 108 0 chr6 133090719 133090951 -49324291 + L2 LINE L2 2176 2432 -882 278 330 51 8 chr6 133090930 133091048 -49324194 - MIR SINE MIR -10 252 130 * 237 33 0 0 chr6 133091260 133091290 -49323952 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2034 111 0 7 chr6 133092790 133093070 -49322172 - AluSc SINE Alu -10 299 22 304 244 45 39 chr6 133093963 133094119 -49321123 - L1ME4a LINE L1 -3 6118 5962 868 141 0 15 chr6 133094202 133094337 -49320905 - FLAM_C SINE Alu 0 133 1 427 300 150 0 chr6 133094337 133094477 -49320765 - L2 LINE L2 -2110 1204 1044 564 197 7 41 chr6 133094488 133094505 -49320737 - L1MA10 LINE L1 0 6334 6318 1163 221 57 61 chr6 133094505 133095012 -49320230 - L1ME2 LINE L1 -9 6155 5651 200 318 73 88 chr6 133096959 133097151 -49318091 - MER5A DNA MER1_type 0 189 1 3489 150 52 14 chr6 133097372 133098020 -49317222 + L1MB5 LINE L1 5485 6157 -17 243 0 0 0 chr6 133098398 133098425 -49316817 + (GA)n Simple_repeat Simple_repeat 1 27 0 2430 98 0 0 chr6 133099164 133099469 -49315773 - AluSx SINE Alu -7 305 1 2824 118 158 4 chr6 133099757 133100307 -49314935 - LTR24C LTR ERV1 0 635 1 538 299 51 68 chr6 133102871 133103440 -49311802 + L1ME3 LINE L1 4 562 -5557 300 215 149 0 chr6 133103503 133103610 -49311632 + MLT1L LTR MaLR 416 538 -77 1472 194 85 9 chr6 133103785 133104104 -49311138 + MER61A LTR ERV1 1 343 0 1057 251 75 49 chr6 133104186 133105093 -49310149 + L1ME3 LINE L1 5006 5934 -211 3592 140 0 4 chr6 133105207 133105736 -49309506 + MER1A DNA MER1_type 1 527 0 393 75 0 0 chr6 133106323 133106376 -49308866 + (TA)n Simple_repeat Simple_repeat 2 54 0 228 260 120 20 chr6 133106591 133106691 -49308551 - L1ME2 LINE L1 -489 5632 5523 327 259 178 13 chr6 133107900 133108073 -49307169 + MIR3 SINE MIR 10 216 -36 886 264 125 28 chr6 133108590 133109063 -49306179 + LTR33 LTR ERVL 3 521 0 26 0 0 0 chr6 133110726 133110752 -49304490 + AT_rich Low_complexity Low_complexity 1 26 0 446 197 34 8 chr6 133111450 133111567 -49303675 + MER104 DNA Tc2 29 148 -32 438 20 0 0 chr6 133111588 133111639 -49303603 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 511 262 131 28 chr6 133111930 133112144 -49303098 + MIR SINE MIR 1 236 -26 200 318 0 0 chr6 133112113 133112157 -49303085 + L2 LINE L2 3210 3253 -19 * 237 65 0 0 chr6 133112641 133112672 -49302570 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 27 29 0 0 chr6 133112981 133113015 -49302227 + AT_rich Low_complexity Low_complexity 1 34 0 463 319 20 44 chr6 133114944 133115010 -49300232 - MIR SINE MIR -44 218 152 1985 227 115 2 chr6 133115010 133115472 -49299770 - LTR40a LTR ERVL -2 517 4 463 319 20 44 chr6 133115472 133115609 -49299633 - MIR SINE MIR -110 152 20 2485 56 0 0 chr6 133118117 133118419 -49296823 + AluY SINE Alu 1 302 -9 2036 109 0 0 chr6 133119869 133120135 -49295107 + AluSq SINE Alu 40 305 -8 225 132 0 0 chr6 133120297 133120335 -49294907 + (TTCTCC)n Simple_repeat Simple_repeat 6 43 0 395 278 46 46 chr6 133121125 133121319 -49293923 + L1MC/D LINE L1 5348 5541 -818 275 314 108 0 chr6 133121349 133121534 -49293708 + L1MC/D LINE L1 5612 5816 -1992 1119 246 73 38 chr6 133121536 133122099 -49293143 + LTR24B LTR ERV1 1 569 -7 2231 109 3 3 chr6 133123191 133123493 -49291749 - AluSq SINE Alu -11 302 1 619 229 17 34 chr6 133123944 133124119 -49291123 - MER20 DNA MER1_type -2 217 46 361 322 16 8 chr6 133126740 133126861 -49288381 + MER5A DNA MER1_type 68 189 0 389 319 132 55 chr6 133126894 133127273 -49287969 - L2 LINE L2 -33 3280 2873 1460 223 69 45 chr6 133127476 133128048 -49287194 + LTR24B LTR ERV1 1 635 0 226 186 0 0 chr6 133128215 133128258 -49286984 + U6 snRNA snRNA 4 46 -61 189 318 98 47 chr6 133128295 133128531 -49286711 - L2 LINE L2 -395 2919 2672 180 0 0 0 chr6 133128852 133128872 -49286370 + (A)n Simple_repeat Simple_repeat 1 20 0 241 291 86 0 chr6 133128981 133129098 -49286144 + L2 LINE L2 3146 3272 0 25 51 0 0 chr6 133129167 133129206 -49286036 + AT_rich Low_complexity Low_complexity 1 39 0 537 299 50 33 chr6 133129705 133129946 -49285296 + MIR SINE MIR 18 262 0 3154 150 37 0 chr6 133131951 133132459 -49282783 + MER1A DNA MER1_type 1 527 0 429 269 12 53 chr6 133134142 133134313 -49280929 - MER112 DNA MER1_type -6 254 91 246 219 27 14 chr6 133135111 133135184 -49280058 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 332 301 41 86 chr6 133135199 133135468 -49279774 - L1MC4a LINE L1 -1877 5931 5675 353 290 62 40 chr6 133135503 133135814 -49279428 - L1MC4a LINE L1 -721 5579 5284 1053 204 23 9 chr6 133136465 133136686 -49278556 + MER58A DNA MER1_type 1 224 0 2183 107 28 0 chr6 133136712 133137001 -49278241 + AluSg SINE Alu 1 297 -13 367 200 117 48 chr6 133137133 133137278 -49277964 - L1M4 LINE L1 -2940 3206 3052 397 323 104 8 chr6 133137293 133137612 -49277630 - L1M4 LINE L1 -3171 2975 2630 21 57 0 0 chr6 133138032 133138067 -49277175 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr6 133138946 133138973 -49276269 + AT_rich Low_complexity Low_complexity 1 27 0 2170 138 0 3 chr6 133139395 133139700 -49275542 - AluSx SINE Alu -8 304 1 299 221 48 77 chr6 133140044 133140148 -49275094 + MIR SINE MIR 90 190 -72 273 253 53 13 chr6 133141212 133141287 -49273955 + L2 LINE L2 3195 3272 0 26 74 0 0 chr6 133141712 133141766 -49273476 + AT_rich Low_complexity Low_complexity 1 54 0 374 119 0 15 chr6 133142287 133142354 -49272888 + (TG)n Simple_repeat Simple_repeat 1 66 0 399 298 36 73 chr6 133144151 133144236 -49271006 + L2 LINE L2 3075 3162 -151 2094 122 0 0 chr6 133144236 133144555 -49270687 - AluSg SINE Alu 0 319 1 399 298 36 73 chr6 133144555 133144715 -49270527 + L2 LINE L2 3162 3313 0 22 35 0 0 chr6 133144821 133144850 -49270392 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 133145184 133145221 -49270021 + AT_rich Low_complexity Low_complexity 1 37 0 333 332 68 42 chr6 133145283 133145473 -49269769 + MIR3 SINE MIR 7 201 -7 1950 155 0 16 chr6 133145825 133146142 -49269100 - AluJb SINE Alu 0 312 1 28 0 0 0 chr6 133147515 133147543 -49267699 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr6 133147625 133147652 -49267590 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 585 277 92 10 chr6 133147666 133147861 -49267381 - L2 LINE L2 -18 3295 3085 211 227 0 0 chr6 133147861 133147905 -49267337 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 234 302 60 60 chr6 133148601 133148717 -49266525 + L2 LINE L2 3198 3313 0 371 343 99 5 chr6 133148749 133148950 -49266292 - MIR SINE MIR -36 226 7 227 222 0 0 chr6 133149204 133149249 -49265993 + (TA)n Simple_repeat Simple_repeat 2 46 0 200 316 127 38 chr6 133149294 133149452 -49265790 - MIR3 SINE MIR -24 184 13 543 211 50 50 chr6 133150073 133150234 -49265008 - L2 LINE L2 -1 3312 3152 519 128 8 16 chr6 133150258 133150383 -49264859 + (TA)n Simple_repeat Simple_repeat 1 124 0 629 236 56 22 chr6 133150432 133150610 -49264632 + AluJo SINE Alu 127 310 -2 1276 11 17 23 chr6 133150610 133150667 -49264575 + (GAAA)n Simple_repeat Simple_repeat 1 231 0 1276 11 17 23 chr6 133150667 133150843 -49264399 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 2096 241 55 33 chr6 133151002 133151582 -49263660 - MLT1E LTR MaLR 0 593 1 880 177 40 29 chr6 133151648 133151823 -49263419 - MER5A DNA MER1_type -9 180 4 508 332 101 0 chr6 133151928 133152127 -49263115 - MER115 DNA AcHobo -441 252 34 986 245 63 29 chr6 133152131 133152482 -49262760 - LTR40a LTR ERVL -5 514 152 273 264 74 34 chr6 133152539 133152687 -49262555 + LTR40b LTR ERVL 185 338 -124 246 232 9 80 chr6 133152690 133152802 -49262440 - LTR40a LTR ERVL -415 104 1 2646 282 98 17 chr6 133152841 133153833 -49261409 - L2 LINE L2 -280 3033 1913 263 300 0 12 chr6 133153837 133153917 -49261325 + GA-rich Low_complexity Low_complexity 1 79 0 2215 76 7 0 chr6 133154101 133154377 -49260865 + AluY SINE Alu 21 298 -13 231 108 0 194 chr6 133155564 133155621 -49259621 + MER34C LTR ERV1 20 38 -504 1728 150 67 27 chr6 133155621 133155921 -49259321 - AluJo SINE Alu 0 312 1 231 108 0 194 chr6 133155921 133155953 -49259289 + MER34C LTR ERV1 38 75 -467 482 256 17 28 chr6 133156194 133156374 -49258868 + MER34 LTR ERV1 365 542 0 217 180 20 0 chr6 133157760 133157810 -49257432 + (TA)n Simple_repeat Simple_repeat 1 51 0 468 271 59 0 chr6 133157811 133157929 -49257313 - FLAM_A SINE Alu -8 125 1 480 339 36 0 chr6 133158769 133158937 -49256305 + MIR SINE MIR 5 178 -84 2222 119 30 0 chr6 133158949 133159252 -49255990 - AluSx SINE Alu 0 312 1 1860 162 40 7 chr6 133159282 133159584 -49255658 - AluJo SINE Alu 0 312 1 326 319 183 21 chr6 133159866 133160057 -49255185 + MIR SINE MIR 1 222 -40 920 287 20 4 chr6 133160067 133160314 -49254928 - MIR SINE MIR -3 259 9 26 30 0 0 chr6 133160601 133160634 -49254608 + AT_rich Low_complexity Low_complexity 1 33 0 6548 146 33 9 chr6 133160916 133161743 -49253499 + Tigger1 DNA MER2_type 2 866 -1552 2337 96 0 3 chr6 133161743 133162045 -49253197 + AluSx SINE Alu 1 301 -11 6548 146 33 9 chr6 133162045 133162367 -49252875 + Tigger1 DNA MER2_type 866 1179 -1239 738 245 0 0 chr6 133162370 133162513 -49252729 + FRAM SINE Alu 1 141 -35 7051 141 18 16 chr6 133162544 133162716 -49252526 + Tigger1 DNA MER2_type 1166 1336 -1082 2402 99 61 3 chr6 133162716 133163060 -49252182 - THE1B LTR MaLR 0 364 1 7051 141 18 16 chr6 133163060 133164138 -49251104 + Tigger1 DNA MER2_type 1336 2418 0 1432 218 132 22 chr6 133164651 133165106 -49250136 + MLT1D LTR MaLR 1 505 0 1767 177 3 0 chr6 133166103 133166391 -49248851 - AluJb SINE Alu -6 306 18 1869 171 7 7 chr6 133166415 133166714 -49248528 - AluJo SINE Alu -13 299 1 304 70 0 0 chr6 133166963 133167006 -49248236 - MADE1 DNA Mariner -37 43 1 433 250 29 29 chr6 133167007 133167143 -49248099 + MIR SINE MIR 107 242 -20 280 257 202 0 chr6 133167271 133167380 -49247862 + L2 LINE L2 3179 3309 -4 333 322 102 0 chr6 133167511 133167629 -49247613 - MER5B DNA MER1_type -42 136 7 24 0 0 0 chr6 133168294 133168318 -49246924 + GC_rich Low_complexity Low_complexity 1 24 0 12881 124 18 8 chr6 133169244 133171583 -49243659 - Tigger1 DNA MER2_type -2 2416 53 1929 93 63 7 chr6 133171583 133171853 -49243389 + AluSc SINE Alu 8 292 -17 12881 124 18 8 chr6 133171853 133171907 -49243335 - Tigger1 DNA MER2_type -2365 53 1 1412 185 136 52 chr6 133171956 133172361 -49242881 + MER82 DNA MER2_type 65 503 -150 25 51 0 0 chr6 133173256 133173295 -49241947 + AT_rich Low_complexity Low_complexity 1 39 0 351 303 57 101 chr6 133173298 133173595 -49241647 - L2 LINE L2 -4 3268 2985 266 321 94 0 chr6 133174290 133174396 -49240846 + MIR SINE MIR 21 136 -126 353 231 218 20 chr6 133174470 133174617 -49240625 - MER5B DNA MER1_type 0 178 3 405 0 0 0 chr6 133175675 133175720 -49239522 + (CA)n Simple_repeat Simple_repeat 2 46 0 342 143 0 0 chr6 133175758 133175814 -49239428 + MER39 LTR ERV1 1 56 -651 2010 129 25 68 chr6 133175849 133176025 -49239217 + MER39 LTR ERV1 256 241 -301 2010 206 49 2 chr6 133176025 133176432 -49238810 - MSTB LTR MaLR 0 426 1 2010 129 25 68 chr6 133176432 133176723 -49238519 + MER39 LTR ERV1 240 542 0 1931 119 4 0 chr6 133176734 133176995 -49238247 + AluSx SINE Alu 34 295 -17 860 179 128 15 chr6 133177507 133177702 -49237540 - MER20 DNA MER1_type 0 219 3 460 133 12 12 chr6 133177938 133178021 -49237221 - MER39 LTR ERV1 -2 705 623 2299 92 141 5 chr6 133178021 133178057 -49237185 - MLT2A1 LTR ERVL 0 444 414 432 0 0 0 chr6 133178057 133178105 -49237137 + (TA)n Simple_repeat Simple_repeat 1 48 0 2299 92 141 5 chr6 133178105 133178459 -49236783 - MLT2A1 LTR ERVL -30 414 1 1379 181 15 0 chr6 133178466 133178732 -49236510 - MER39 LTR ERV1 -88 619 350 1092 204 74 0 chr6 133178765 133178996 -49236246 - MER39 LTR ERV1 -459 248 1 2494 177 212 92 chr6 133179019 133179930 -49235312 + LTR28 LTR ERV1 1 1020 0 2182 134 0 0 chr6 133180589 133180895 -49234347 + AluSx SINE Alu 1 306 -6 184 323 105 38 chr6 133181135 133181268 -49233974 + L3b LINE CR1 1107 1248 -335 22 0 0 0 chr6 133181426 133181448 -49233794 + AT_rich Low_complexity Low_complexity 1 22 0 3507 134 20 82 chr6 133182021 133182224 -49233018 + MER39 LTR ERV1 1 215 -492 2046 109 63 38 chr6 133182224 133182429 -49232813 - THE1C LTR MaLR 0 375 156 1728 122 115 14 chr6 133182429 133182707 -49232535 + AluSg SINE Alu 1 306 -4 2046 109 63 38 chr6 133182707 133182867 -49232375 - THE1C LTR MaLR -219 156 1 3507 134 20 82 chr6 133182867 133183417 -49231825 + MER39 LTR ERV1 215 707 0 21 36 0 0 chr6 133183535 133183563 -49231679 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 133183633 133183661 -49231581 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 133183774 133183802 -49231440 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr6 133183958 133183983 -49231259 + AT_rich Low_complexity Low_complexity 1 25 0 333 219 21 21 chr6 133183985 133184081 -49231161 - MER34 LTR ERV1 0 542 447 317 205 105 67 chr6 133184048 133184286 -49230956 - LTR48 LTR ERV1 -46 576 377 * 565 226 13 93 chr6 133184299 133184525 -49230717 - MER34C LTR ERV1 -377 208 1 216 97 0 0 chr6 133184693 133184724 -49230518 + (TG)n Simple_repeat Simple_repeat 1 31 0 285 241 0 0 chr6 133184779 133184837 -49230405 - MER63 DNA MER1_type 0 1061 1004 392 271 0 9 chr6 133184841 133184948 -49230294 + L1ME3A LINE L1 1706 1811 -4585 1478 89 17 55 chr6 133185200 133185437 -49229805 - MER30 DNA MER1_type 0 230 3 663 288 91 31 chr6 133185743 133185796 -49229446 + L1ME3A LINE L1 5349 5397 -842 1848 184 63 29 chr6 133185796 133186208 -49229034 + MSTB LTR MaLR 1 426 0 663 288 91 31 chr6 133186208 133186775 -49228467 + L1ME3A LINE L1 5397 6017 -222 22 0 0 0 chr6 133187012 133187034 -49228208 + AT_rich Low_complexity Low_complexity 1 22 0 269 332 31 36 chr6 133187080 133187273 -49227969 - L2 LINE L2 -729 2585 2394 536 285 65 73 chr6 133187499 133187851 -49227391 + L1ME4a LINE L1 5618 5967 -154 2196 81 3 0 chr6 133187851 133188167 -49227075 + AluY SINE Alu 1 317 0 536 285 65 73 chr6 133188167 133188293 -49226949 + L1ME4a LINE L1 5967 6093 -28 691 272 7 35 chr6 133188362 133188652 -49226590 - L1ME LINE L1 -384 5769 5488 25 31 0 0 chr6 133188758 133188790 -49226452 + AT_rich Low_complexity Low_complexity 1 32 0 611 318 86 17 chr6 133188800 133190011 -49225231 - L1ME LINE L1 -687 5460 4160 349 331 47 6 chr6 133190074 133190433 -49224809 - L1ME LINE L1 -2443 3686 3313 1325 172 9 17 chr6 133190522 133190754 -49224488 - AluJo SINE Alu -1 311 82 689 316 41 59 chr6 133190790 133190964 -49224278 - L1ME LINE L1 -3178 2951 2775 2227 120 0 0 chr6 133190964 133191263 -49223979 - AluSx SINE Alu -13 299 1 689 316 41 59 chr6 133191263 133191531 -49223711 - L1ME LINE L1 -3354 2775 2517 307 292 185 19 chr6 133191563 133191779 -49223463 - L1ME LINE L1 -3785 2344 2093 1411 204 23 62 chr6 133191942 133192250 -49222992 + AluJo SINE Alu 1 296 -16 246 294 12 0 chr6 133192483 133192568 -49222674 - HAL1 LINE L1 -919 1588 1503 967 286 74 123 chr6 133192694 133193158 -49222084 - L1ME LINE L1 -4867 1252 849 1384 238 108 17 chr6 133193158 133193621 -49221621 - MLT1D LTR MaLR 0 505 1 967 286 74 123 chr6 133193621 133194026 -49221216 - L1ME LINE L1 -5270 849 426 1826 157 104 32 chr6 133194069 133194376 -49220866 - MER57A LTR ERV1 0 403 62 2168 106 0 0 chr6 133194376 133194689 -49220553 - AluSx SINE Alu 0 313 1 1826 157 104 32 chr6 133194689 133194756 -49220486 - MER57A LTR ERV1 -341 62 1 1225 93 230 0 chr6 133194756 133194982 -49220260 - MER57A-int LTR ERV1 0 7537 7260 3068 140 62 14 chr6 133194985 133195791 -49219451 - L1PBa LINE L1 -3699 3163 2319 4251 122 86 66 chr6 133195791 133197224 -49218018 - pTR5 LTR ERV1 -6 2432 66 7172 199 135 10 chr6 133197224 133199295 -49215947 - L1PBa LINE L1 -4527 2336 6 7732 106 29 50 chr6 133199309 133200662 -49214580 - MER57A-int LTR ERV1 -3433 4104 2781 896 110 19 32 chr6 133200658 133200812 -49214430 - MER57A-int LTR ERV1 -3929 2017 1866 * 7600 129 68 20 chr6 133200811 133201092 -49214150 - MER57A-int LTR ERV1 -5166 2371 2105 2330 186 98 64 chr6 133201092 133201800 -49213442 + MER50 LTR ERV1 1 732 -2 7600 129 68 20 chr6 133201800 133202822 -49212420 - MER57A-int LTR ERV1 -5432 2105 1006 5146 127 1 15 chr6 133202814 133203617 -49211625 - MER57A-int LTR ERV1 -6730 807 16 * 2480 80 0 0 chr6 133203649 133203960 -49211282 + AluY SINE Alu 1 311 0 1831 169 52 16 chr6 133203960 133204344 -49210898 - MER57A LTR ERV1 -5 398 1 558 242 13 13 chr6 133205032 133205185 -49210057 - L1PB4 LINE L1 -8 6148 5996 249 57 0 0 chr6 133205898 133205933 -49209309 + (TG)n Simple_repeat Simple_repeat 2 36 0 531 278 86 0 chr6 133205945 133206096 -49209146 - MIR SINE MIR -97 165 2 240 35 0 0 chr6 133206758 133206787 -49208455 + (CA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr6 133206914 133206948 -49208294 + AT_rich Low_complexity Low_complexity 1 34 0 26 50 0 0 chr6 133207586 133207626 -49207616 + AT_rich Low_complexity Low_complexity 1 40 0 359 56 19 0 chr6 133207674 133207728 -49207514 + (CA)n Simple_repeat Simple_repeat 2 56 0 396 267 38 15 chr6 133208526 133208657 -49206585 - MIR SINE MIR -1 261 128 399 280 60 24 chr6 133208714 133208882 -49206360 - MIR SINE MIR -22 240 67 1186 316 29 40 chr6 133209018 133209734 -49205508 + L1M2c LINE L1 399 1404 -6162 7973 197 62 77 chr6 133210203 133210660 -49204582 + L1M2c LINE L1 2098 2560 -5005 2000 149 3 0 chr6 133210660 133210948 -49204294 + AluSx SINE Alu 1 289 -23 7973 197 62 77 chr6 133210948 133211603 -49203639 + L1M2c LINE L1 2560 3223 -4342 2030 196 49 2 chr6 133211603 133212012 -49203230 - MSTB1 LTR MaLR 0 432 5 7973 197 62 77 chr6 133212012 133213635 -49201607 + L1M2c LINE L1 3223 4869 -2696 1943 134 55 27 chr6 133213635 133214000 -49201242 + THE1C LTR MaLR 1 375 0 7973 197 62 77 chr6 133214000 133214382 -49200860 + L1M2c LINE L1 4869 5255 -2310 1036 189 4 66 chr6 133214382 133214609 -49200633 + AluJo SINE Alu 84 296 -16 7973 197 62 77 chr6 133214609 133215584 -49199658 + L1M2c LINE L1 5255 5989 -1576 980 181 42 0 chr6 133215600 133215793 -49199449 - MLT1B LTR MaLR -189 201 1 24 91 0 0 chr6 133215955 133216021 -49199221 + AT_rich Low_complexity Low_complexity 1 66 0 261 277 0 0 chr6 133216031 133216096 -49199146 + (TA)n Simple_repeat Simple_repeat 1 65 0 1878 176 0 0 chr6 133216189 133216501 -49198741 + AluSx SINE Alu 1 312 0 444 306 42 0 chr6 133216508 133216652 -49198590 + MER63A DNA MER1_type 55 204 -6 390 129 0 0 chr6 133216679 133216741 -49198501 + (TG)n Simple_repeat Simple_repeat 2 63 0 1859 187 0 0 chr6 133216796 133217095 -49198147 + AluJo SINE Alu 3 301 -11 2339 91 3 0 chr6 133217345 133217642 -49197600 + AluSp SINE Alu 1 298 -15 588 288 57 39 chr6 133219809 133220038 -49195204 - MIR SINE MIR -10 252 20 291 259 0 0 chr6 133220054 133220139 -49195103 + (TA)n Simple_repeat Simple_repeat 2 86 0 399 179 12 0 chr6 133220145 133220229 -49195013 + MER53 DNA DNA 105 189 0 199 163 0 58 chr6 133220428 133220514 -49194728 + T-rich Low_complexity Low_complexity 4 84 0 420 168 126 0 chr6 133220624 133220719 -49194523 + MLT1C LTR MaLR 1 107 -360 2296 137 8 33 chr6 133220739 133221133 -49194109 - MLT1B LTR MaLR 0 390 7 1109 187 29 5 chr6 133221196 133221405 -49193837 + MLT1C LTR MaLR 254 467 0 378 0 0 0 chr6 133221540 133221582 -49193660 + (GGA)n Simple_repeat Simple_repeat 3 44 0 319 342 89 19 chr6 133221703 133221861 -49193381 - MIR3 SINE MIR -18 190 22 180 0 0 0 chr6 133221946 133221966 -49193276 + (CTA)n Simple_repeat Simple_repeat 1 20 0 183 312 79 79 chr6 133222029 133222231 -49193011 - MIR SINE MIR -39 223 22 300 114 129 57 chr6 133222416 133222486 -49192756 + MIR SINE MIR 111 185 -77 214 247 21 43 chr6 133222606 133222699 -49192543 + T-rich Low_complexity Low_complexity 2 92 0 300 120 0 0 chr6 133223331 133223381 -49191861 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 209 297 149 0 chr6 133223549 133223623 -49191619 + MIR SINE MIR 21 105 -103 23 0 0 0 chr6 133223629 133223652 -49191590 + AT_rich Low_complexity Low_complexity 1 23 0 265 239 187 37 chr6 133223663 133223797 -49191445 + MIR SINE MIR 103 256 -6 248 325 102 38 chr6 133223796 133223953 -49191289 - MIR3 SINE MIR -39 169 3 * 271 298 76 53 chr6 133224084 133224255 -49190987 - L2 LINE L2 -4 3309 3135 1146 245 69 37 chr6 133224473 133224852 -49190390 + LTR16A LTR ERVL 60 450 0 184 161 0 0 chr6 133225357 133225388 -49189854 + L2 LINE L2 3279 3309 -4 677 274 182 27 chr6 133225523 133226095 -49189147 + L2 LINE L2 2644 3313 0 2187 107 0 31 chr6 133226224 133226576 -49188666 + AluY SINE Alu 2 343 0 852 219 26 10 chr6 133226821 133227013 -49188229 - MLT1C LTR MaLR -38 429 235 895 231 41 25 chr6 133227536 133227778 -49187464 - MIR SINE MIR 0 262 17 189 0 0 0 chr6 133228451 133228472 -49186770 + (TG)n Simple_repeat Simple_repeat 2 22 0 334 307 44 53 chr6 133228485 133228710 -49186532 + L1MC4a LINE L1 5434 5656 -465 2029 96 31 0 chr6 133228892 133229183 -49186059 - AluSq SINE Alu -10 303 4 1942 114 0 4 chr6 133229191 133229462 -49185780 - AluY SINE Alu -4 307 38 1071 247 126 56 chr6 133229465 133229910 -49185332 - L1ME3 LINE L1 -97 6065 5590 24 0 0 0 chr6 133230210 133230234 -49185008 + AT_rich Low_complexity Low_complexity 1 24 0 791 142 0 22 chr6 133234743 133234877 -49180365 + FLAM_A SINE Alu 3 133 0 24 0 0 0 chr6 133235067 133235091 -49180151 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 133236561 133236589 -49178653 + AT_rich Low_complexity Low_complexity 1 28 0 508 274 61 80 chr6 133236797 133237173 -49178069 + L1MC4a LINE L1 5645 6016 -105 211 234 0 53 chr6 133237801 133237895 -49177347 + (TA)n Simple_repeat Simple_repeat 1 89 0 228 143 0 0 chr6 133238035 133238070 -49177172 + L2 LINE L2 3279 3313 0 416 257 221 0 chr6 133240344 133240484 -49174758 + MIR SINE MIR 2 172 -90 772 245 27 0 chr6 133240672 133240856 -49174386 + MER5A DNA MER1_type 1 189 0 229 302 23 0 chr6 133242910 133242996 -49172246 - MARNA DNA Mariner -112 474 387 302 240 68 62 chr6 133243328 133243474 -49171768 - L1M2 LINE L1 -709 5445 5299 440 298 8 0 chr6 133243683 133243804 -49171438 + MLT1J LTR MaLR 1 122 -389 1172 210 42 19 chr6 133244207 133244482 -49170760 + MSTD LTR MaLR 65 382 -50 1835 140 73 25 chr6 133247219 133247577 -49167665 + THE1C LTR MaLR 1 375 0 1355 82 121 5 chr6 133247640 133247846 -49167396 + MER30 DNA MER1_type 1 230 0 560 73 12 0 chr6 133248543 133248625 -49166617 + (TCTA)n Simple_repeat Simple_repeat 1 83 0 243 287 148 20 chr6 133248854 133248955 -49166287 + MIR3 SINE MIR 1 114 -94 717 246 23 0 chr6 133249388 133249559 -49165683 - MER69A DNA AcHobo -1 176 2 235 293 146 0 chr6 133249886 133249968 -49165274 - MIR SINE MIR -21 241 148 477 0 0 0 chr6 133251358 133251411 -49163831 + (CA)n Simple_repeat Simple_repeat 2 54 0 1182 193 92 61 chr6 133251452 133251747 -49163495 - Tigger5 DNA MER2_type -2019 304 1 5428 114 23 12 chr6 133252156 133253036 -49162206 + L1PB2 LINE L1 5262 6151 0 2699 107 35 0 chr6 133253046 133253447 -49161795 + L1PA16 LINE L1 5447 5861 -305 323 333 72 34 chr6 133254321 133254585 -49160657 - L2 LINE L2 -87 3226 2953 207 427 16 0 chr6 133254698 133254822 -49160420 + L2 LINE L2 3138 3263 -9 401 325 176 55 chr6 133254832 133255791 -49159451 + L2 LINE L2 1890 2964 -350 1747 291 92 24 chr6 133256058 133257022 -49158220 - L2 LINE L2 0 3313 2282 954 216 118 43 chr6 133257322 133257585 -49157657 + MER20B DNA MER1_type 6 300 -483 2179 73 0 53 chr6 133257585 133257886 -49157356 - AluY SINE Alu -10 301 17 954 216 118 43 chr6 133257886 133257951 -49157291 + MER20B DNA MER1_type 300 359 -424 280 250 14 0 chr6 133257960 133258032 -49157210 + MER20B DNA MER1_type 253 325 -458 210 232 10 20 chr6 133258041 133258140 -49157102 + (TA)n Simple_repeat Simple_repeat 1 98 0 22 0 0 0 chr6 133258162 133258184 -49157058 + AT_rich Low_complexity Low_complexity 1 22 0 460 210 105 11 chr6 133258320 133258501 -49156741 + MER20B DNA MER1_type 564 761 -22 2129 116 7 0 chr6 133260029 133260332 -49154910 + AluSq SINE Alu 9 313 0 331 278 85 69 chr6 133261167 133261580 -49153662 + L1ME4a LINE L1 5090 5500 -759 398 299 119 52 chr6 133261586 133262091 -49153151 + L1ME4a LINE L1 5512 6050 -71 2120 130 0 0 chr6 133262156 133262449 -49152793 + AluSx SINE Alu 6 298 -14 225 0 0 0 chr6 133262514 133262539 -49152703 + (TG)n Simple_repeat Simple_repeat 2 26 0 1921 139 7 19 chr6 133265416 133265725 -49149517 + AluSx SINE Alu 3 307 -5 585 292 25 20 chr6 133266525 133266727 -49148515 - MIR SINE MIR -57 205 3 517 233 182 6 chr6 133268008 133268167 -49147075 + MER5A DNA MER1_type 3 189 0 286 371 95 46 chr6 133269519 133269907 -49145335 - L2 LINE L2 0 3272 2866 244 369 18 9 chr6 133270047 133270158 -49145084 + L3 LINE CR1 1112 1223 -354 261 0 0 0 chr6 133270540 133270569 -49144673 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 324 0 0 0 chr6 133270575 133270611 -49144631 + (CA)n Simple_repeat Simple_repeat 1 36 0 379 347 96 14 chr6 133271199 133271418 -49143824 + L3 LINE CR1 1325 1561 -16 217 233 80 87 chr6 133272942 133273092 -49142150 + L2 LINE L2 2292 2440 -874 530 255 178 14 chr6 133273185 133273393 -49141849 - MIR SINE MIR 0 262 21 275 298 83 33 chr6 133273458 133273639 -49141603 - L2 LINE L2 -6 3307 3118 281 244 23 23 chr6 133276405 133276491 -49138751 - MER5B DNA MER1_type -92 86 1 355 302 77 89 chr6 133276796 133277044 -49138198 + L2 LINE L2 3028 3272 0 350 235 74 47 chr6 133279490 133279639 -49135603 - L2 LINE L2 -205 3067 2915 362 312 116 10 chr6 133280325 133280524 -49134718 + L2 LINE L2 1285 1504 -1810 487 209 37 86 chr6 133280864 133281051 -49134191 + MER104 DNA MER2_type 3 180 0 402 340 129 22 chr6 133281114 133281679 -49133563 - L2 LINE L2 -117 3196 2511 454 158 53 18 chr6 133281679 133281793 -49133449 - L1MA8 LINE L1 -2 6289 6172 11869 107 9 5 chr6 133281829 133283613 -49131629 - L1P LINE L1 -2034 4112 2321 235 118 0 0 chr6 133283611 133283645 -49131597 + L1PA8 LINE L1 6126 6159 -13 * 2804 87 2 32 chr6 133283659 133284071 -49131171 + L1PA10 LINE L1 5769 6168 0 618 258 51 19 chr6 133284305 133284561 -49130681 - L1MC5 LINE L1 -60 7901 7638 348 191 0 0 chr6 133285563 133285626 -49129616 + MLT1A1 LTR MaLR 302 364 -1 328 287 16 0 chr6 133285635 133285757 -49129485 + L1ME LINE L1 4697 4820 -1326 2220 64 39 52 chr6 133285862 133285978 -49129264 - L1P3 LINE L1 -559 5595 5479 187 0 43 65 chr6 133285978 133286024 -49129218 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 2220 64 39 52 chr6 133286024 133286411 -49128831 - L1P3 LINE L1 -675 5479 5104 4708 57 0 0 chr6 133286411 133286986 -49128256 + L1PA8 LINE L1 5579 6171 -1 394 263 73 44 chr6 133287077 133287419 -49127823 + L1ME LINE L1 4985 5336 -810 * 1230 14 0 0 chr6 133287404 133287545 -49127697 - L1P LINE L1 -4220 1926 1786 11827 24 1 0 chr6 133287545 133289701 -49125541 + L1PA3 LINE L1 4000 6155 0 457 224 26 0 chr6 133289797 133289913 -49125329 + L1ME LINE L1 5318 5436 -734 21 57 0 0 chr6 133290130 133290165 -49125077 + AT_rich Low_complexity Low_complexity 1 35 0 228 158 0 0 chr6 133290372 133290410 -49124832 - L1MC/D LINE L1 -1918 5890 5853 26 0 0 0 chr6 133290413 133290439 -49124803 + AT_rich Low_complexity Low_complexity 1 26 0 2570 67 44 3 chr6 133290693 133291034 -49124208 + THE1A LTR MaLR 1 355 0 11300 106 2 9 chr6 133291034 133292625 -49122617 + THE1A-int LTR MaLR 1 1580 0 2688 80 3 3 chr6 133292625 133292976 -49122266 + THE1A LTR MaLR 1 351 -4 674 96 11 1 chr6 133294460 133294573 -49120669 + L1M LINE L1 5289 5402 -753 7257 94 43 2 chr6 133294726 133295884 -49119358 + L1MA1 LINE L1 5111 6302 0 31 26 0 0 chr6 133295939 133295977 -49119265 + AT_rich Low_complexity Low_complexity 1 38 0 192 77 0 0 chr6 133296424 133296450 -49118792 + (ATG)n Simple_repeat Simple_repeat 2 27 0 527 255 240 5 chr6 133296456 133296656 -49118586 - MIR SINE MIR -6 256 10 393 117 0 0 chr6 133297098 133297158 -49118084 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 180 152 0 0 chr6 133297211 133297244 -49117998 + CT-rich Low_complexity Low_complexity 4 36 0 342 115 0 0 chr6 133297300 133297352 -49117890 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 547 308 128 27 chr6 133297691 133298130 -49117112 + L2 LINE L2 1889 2371 -943 2091 125 3 10 chr6 133298155 133298460 -49116782 - AluSx SINE Alu -9 303 1 956 96 7 7 chr6 133298460 133298595 -49116647 - AluSq/x SINE Alu -178 135 1 3855 149 17 11 chr6 133298787 133299451 -49115791 - L1MA8 LINE L1 -111 6180 5513 236 340 19 10 chr6 133299453 133299556 -49115686 + L2 LINE L2 2689 2792 -522 587 359 62 54 chr6 133299599 133299967 -49115275 + L2 LINE L2 2893 3263 -9 2078 118 3 3 chr6 133300714 133301003 -49114239 + AluSx SINE Alu 1 289 -23 685 246 128 36 chr6 133301273 133301331 -49113911 - L1ME4a LINE L1 -210 5911 5860 2367 81 0 3 chr6 133301331 133301627 -49113615 + AluSg1 SINE Alu 1 295 -14 685 246 128 36 chr6 133301627 133301907 -49113335 - L1ME4a LINE L1 -261 5860 5541 189 333 83 67 chr6 133302557 133302677 -49112565 + L2 LINE L2 3142 3263 -9 28 0 0 0 chr6 133303013 133303041 -49112201 + AT_rich Low_complexity Low_complexity 1 28 0 621 251 95 103 chr6 133303068 133303638 -49111604 + HAL1 LINE L1 1761 2325 -182 505 314 147 36 chr6 133303728 133304177 -49111065 - HAL1 LINE L1 -1669 838 340 464 149 92 0 chr6 133305788 133305875 -49109367 - MER68 LTR ERV1 -71 491 397 2262 80 100 0 chr6 133305959 133306308 -49108934 - L1PA7 LINE L1 -3 6151 5768 220 320 141 0 chr6 133306515 133306643 -49108599 + L2 LINE L2 1682 1827 -1487 402 314 54 29 chr6 133306903 133307142 -49108100 - L1MC4a LINE L1 -1907 5901 5657 21 57 0 0 chr6 133307248 133307283 -49107959 + AT_rich Low_complexity Low_complexity 1 35 0 228 290 99 0 chr6 133307405 133307567 -49107675 - L1ME LINE L1 -345 5776 5599 25 0 0 0 chr6 133308094 133308119 -49107123 + AT_rich Low_complexity Low_complexity 1 25 0 335 272 147 37 chr6 133308486 133308622 -49106620 + MIR SINE MIR 109 259 -3 24 53 0 0 chr6 133308875 133308913 -49106329 + AT_rich Low_complexity Low_complexity 1 38 0 721 288 42 72 chr6 133309346 133309506 -49105736 + L2 LINE L2 2911 3074 -239 375 23 0 0 chr6 133309506 133309550 -49105692 + (CA)n Simple_repeat Simple_repeat 1 44 0 721 288 42 72 chr6 133309550 133309775 -49105467 + L2 LINE L2 3074 3284 -29 218 250 0 0 chr6 133311567 133311611 -49103631 + MIR SINE MIR 219 262 0 248 231 19 0 chr6 133313244 133313296 -49101946 + GA-rich Low_complexity Low_complexity 3 55 0 1516 173 52 24 chr6 133314505 133314627 -49100615 + MER44D DNA MER2_type 1 118 -2373 2309 92 0 0 chr6 133314627 133314921 -49100321 - AluY SINE Alu -17 294 1 1516 173 52 24 chr6 133314921 133315128 -49100114 + MER44D DNA MER2_type 118 609 0 242 263 47 91 chr6 133315318 133315349 -49099893 + L1MEd LINE L1 817 848 -5271 2317 84 0 3 chr6 133315349 133315646 -49099596 + AluSp SINE Alu 1 296 -17 242 263 47 91 chr6 133315646 133315846 -49099396 + L1MEd LINE L1 848 1038 -5081 326 275 81 89 chr6 133315873 133315929 -49099313 + L1ME4a LINE L1 5652 5707 -414 2439 87 0 0 chr6 133315929 133316229 -49099013 - AluSq SINE Alu -13 300 1 326 275 81 89 chr6 133316229 133316419 -49098823 + L1ME4a LINE L1 5707 5896 -225 1161 196 63 22 chr6 133317691 133318033 -49097209 + MSTD LTR MaLR 1 396 0 1079 133 124 14 chr6 133319163 133319381 -49095861 - L1MA7 LINE L1 -3 6288 6047 611 248 37 6 chr6 133319445 133319606 -49095636 - MIR SINE MIR -94 168 3 249 83 0 0 chr6 133319764 133319800 -49095442 + (TG)n Simple_repeat Simple_repeat 2 37 0 263 300 12 0 chr6 133319804 133319884 -49095358 - L3 LINE CR1 -130 1447 1367 26 0 0 0 chr6 133322325 133322351 -49092891 + AT_rich Low_complexity Low_complexity 1 26 0 26 64 0 0 chr6 133322373 133322420 -49092822 + AT_rich Low_complexity Low_complexity 1 47 0 246 327 120 2 chr6 133323189 133323357 -49091885 - MIR SINE MIR -28 234 50 196 308 0 0 chr6 133323947 133323999 -49091243 - L2 LINE L2 -8 3305 3254 1954 120 10 14 chr6 133324086 133324378 -49090864 - AluSc SINE Alu -18 291 1 2198 267 130 18 chr6 133325181 133326282 -49088960 + MER69B DNA AcHobo 2 1225 -1 206 274 32 16 chr6 133326296 133326358 -49088884 - L2 LINE L2 -1421 1893 1831 234 228 99 55 chr6 133326359 133326561 -49088681 + L1ME3A LINE L1 5154 5364 -782 399 306 80 31 chr6 133326612 133326944 -49088298 + L1ME3A LINE L1 5386 5757 -413 2189 128 3 3 chr6 133326944 133327256 -49087986 - AluSx SINE Alu 0 312 1 399 306 80 31 chr6 133327256 133327473 -49087769 + L1ME3A LINE L1 5757 5962 -208 744 266 65 4 chr6 133328423 133328698 -49086544 + L1MC5 LINE L1 7604 7895 -66 263 319 44 92 chr6 133329075 133329392 -49085850 + L2 LINE L2 2957 3258 -14 206 310 28 0 chr6 133329530 133329601 -49085641 - MIR SINE MIR -8 254 182 488 290 14 21 chr6 133329606 133329751 -49085491 + MER5A DNA MER1_type 46 189 0 29 28 0 0 chr6 133330045 133330081 -49085161 + AT_rich Low_complexity Low_complexity 1 36 0 365 323 0 10 chr6 133330727 133330826 -49084416 + MER5A DNA MER1_type 9 106 -83 183 260 40 0 chr6 133330903 133330953 -49084289 + MIR SINE MIR 48 99 -109 592 213 118 0 chr6 133330963 133331132 -49084110 + MER3 DNA MER1_type 1 189 -20 2941 270 104 49 chr6 133331240 133331839 -49083403 - L2 LINE L2 -12 3301 2736 1502 178 19 15 chr6 133331839 133332109 -49083133 - AluJo SINE Alu -37 275 5 2941 270 104 49 chr6 133332109 133333104 -49082138 - L2 LINE L2 -577 2736 1620 5439 195 63 45 chr6 133333104 133334602 -49080640 + Cheshire DNA MER1_type 1 1525 -895 1889 155 3 3 chr6 133334607 133334916 -49080326 - MER1B DNA MER1_type 0 339 31 686 179 62 26 chr6 133334937 133335132 -49080110 + Cheshire DNA MER1_type 1540 1741 -679 617 182 0 0 chr6 133335143 133335242 -49080000 + FLAM_A SINE Alu 23 121 -21 570 124 116 62 chr6 133335262 133335391 -49079851 + Cheshire DNA MER1_type 1733 1868 -552 999 214 21 45 chr6 133335391 133335681 -49079561 + L1MB8 LINE L1 5885 6167 -11 2301 187 39 13 chr6 133335690 133336235 -49079007 + Cheshire DNA MER1_type 1858 2416 -4 571 172 0 43 chr6 133336847 133336963 -49078279 - MLT1A1 LTR MaLR -254 111 1 1083 107 12 0 chr6 133337424 133337593 -49077649 + L1MA2 LINE L1 6134 6304 0 228 237 153 17 chr6 133337842 133338019 -49077223 - L1M4 LINE L1 -749 5397 5197 302 323 64 70 chr6 133338086 133338326 -49076916 - L1M4 LINE L1 -1017 5129 4890 1740 177 23 7 chr6 133338326 133338631 -49076611 - AluJb SINE Alu -2 310 1 302 323 64 70 chr6 133338631 133338749 -49076493 - L1M4 LINE L1 -1256 4890 4773 1527 190 89 6 chr6 133338766 133339103 -49076139 + MLT1A1 LTR MaLR 1 365 0 200 290 87 14 chr6 133339111 133339180 -49076062 - MIR SINE MIR -155 107 34 4207 89 39 36 chr6 133340655 133340848 -49074394 + MER4A LTR ERV1 1 192 -472 2126 106 0 35 chr6 133340848 133341159 -49074083 - AluSc SINE Alu -9 300 1 4207 89 39 36 chr6 133341159 133341627 -49073615 + MER4A LTR ERV1 192 664 0 31 68 0 0 chr6 133341692 133341751 -49073491 + AT_rich Low_complexity Low_complexity 1 59 0 847 278 81 54 chr6 133342988 133343445 -49071797 + L2 LINE L2 2560 3021 -251 648 249 101 139 chr6 133343684 133344530 -49070712 + LTR28 LTR ERV1 1 1470 -285 373 327 6 6 chr6 133344532 133344691 -49070551 + MER52A LTR ERV1 1597 1755 0 1259 228 100 13 chr6 133345383 133345835 -49069407 - Charlie7 DNA MER1_type -215 2397 1907 1393 127 0 24 chr6 133346091 133346296 -49068946 + AluJb SINE Alu 1 200 -112 1997 120 0 4 chr6 133346328 133346595 -49068647 + AluSg SINE Alu 1 266 -44 378 115 0 0 chr6 133346595 133346656 -49068586 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 189 229 0 0 chr6 133346777 133346825 -49068417 + (TA)n Simple_repeat Simple_repeat 1 48 0 1718 163 0 21 chr6 133347167 133347449 -49067793 + AluJo SINE Alu 9 284 -28 25 0 0 0 chr6 133348574 133348599 -49066643 + AT_rich Low_complexity Low_complexity 1 25 0 793 259 144 11 chr6 133348646 133349127 -49066115 + MLT1H1 LTR MaLR 2 555 0 315 206 0 44 chr6 133349346 133349414 -49065828 - L2 LINE L2 0 3313 3249 209 322 144 33 chr6 133349619 133349799 -49065443 - L2 LINE L2 -431 2883 2684 1197 319 80 46 chr6 133350202 133351129 -49064113 - L2 LINE L2 -340 2974 2017 2356 95 0 0 chr6 133351142 133351447 -49063795 + AluSc SINE Alu 1 305 -4 417 283 18 18 chr6 133351713 133351826 -49063416 + MIR SINE MIR 20 132 -130 2813 293 77 23 chr6 133351870 133353258 -49061984 + L2 LINE L2 1829 3295 -18 194 269 58 19 chr6 133353949 133354001 -49061241 + L2 LINE L2 3219 3272 0 234 91 0 0 chr6 133354533 133354566 -49060676 + (CA)n Simple_repeat Simple_repeat 2 34 0 2185 90 7 13 chr6 133354814 133355113 -49060129 + AluSx SINE Alu 1 297 -15 270 297 55 55 chr6 133356575 133356703 -49058539 - MIR SINE MIR -120 142 15 555 304 171 20 chr6 133356916 133357262 -49057980 - L2 LINE L2 -8 3305 2908 2316 95 7 0 chr6 133357309 133357604 -49057638 - AluSx SINE Alu -15 297 1 408 296 141 83 chr6 133360041 133360873 -49054369 - L1M2 LINE L1 -5426 1423 544 195 186 0 0 chr6 133360952 133360995 -49054247 + (CACG)n Simple_repeat Simple_repeat 1 43 0 5163 142 28 8 chr6 133363089 133364022 -49051220 - L1MA4A LINE L1 -6 6297 5346 982 151 0 65 chr6 133364045 133364277 -49050965 - L1MA4A LINE L1 -1151 4995 4779 4608 179 4 43 chr6 133364298 133365442 -49049800 - L1 LINE L1 -796 6412 5313 * 4991 219 83 80 chr6 133365439 133367962 -49047280 - L1 LINE L1 -4685 2524 1 27 29 0 0 chr6 133368207 133368241 -49047001 + AT_rich Low_complexity Low_complexity 1 34 0 241 237 10 10 chr6 133368567 133368664 -49046578 + GA-rich Low_complexity Low_complexity 2 98 0 260 256 93 87 chr6 133368676 133369169 -49046073 - L1ME4a LINE L1 -97 6024 5529 183 224 0 102 chr6 133369657 133369706 -49045536 - L2 LINE L2 -8 3264 3221 351 316 11 0 chr6 133369949 133370044 -49045198 + MER119 DNA MER1_type 7 102 -481 373 159 204 26 chr6 133370058 133370171 -49045071 + MER119 DNA MER1_type 448 580 -3 2507 199 62 8 chr6 133370276 133370809 -49044433 + MER77 LTR ERV1 41 602 -3 245 329 13 0 chr6 133371500 133371576 -49043666 + MIR3 SINE MIR 104 180 -28 2389 107 33 11 chr6 133372068 133372431 -49042811 - THE1C LTR MaLR 0 375 5 363 333 37 6 chr6 133372441 133372603 -49042639 + LTR33 LTR ERVL 1 167 -354 1752 188 106 16 chr6 133372720 133373145 -49042097 - MLT1C LTR MaLR 0 467 5 209 117 33 67 chr6 133373330 133373390 -49041852 + (TTATG)n Simple_repeat Simple_repeat 4 61 0 1271 201 5 0 chr6 133373652 133373871 -49041371 - AluJb SINE Alu -7 305 86 785 262 43 49 chr6 133373889 133374194 -49041048 + L2 LINE L2 2995 3297 -16 638 233 159 0 chr6 133375797 133375960 -49039282 + MER58C DNA MER1_type 27 215 0 187 237 53 0 chr6 133376220 133376258 -49038984 + MER5A DNA MER1_type 148 187 -2 * 219 284 69 10 chr6 133376258 133376353 -49038889 + MIR3 SINE MIR 105 205 -3 2236 293 55 28 chr6 133376641 133376718 -49038524 + L1ME2 LINE L1 28 101 -6160 369 0 0 0 chr6 133376718 133376759 -49038483 + (CA)n Simple_repeat Simple_repeat 1 41 0 2236 293 55 28 chr6 133376759 133378333 -49036909 + L1ME2 LINE L1 101 1769 -4492 3247 251 76 36 chr6 133378387 133379535 -49035707 + L1ME2 LINE L1 4012 5321 -777 2465 80 0 0 chr6 133379535 133379834 -49035408 + AluSc SINE Alu 1 299 -10 3247 251 76 36 chr6 133379834 133380580 -49034662 + L1ME2 LINE L1 5321 6035 -63 308 259 22 118 chr6 133380591 133380819 -49034423 + L1MC5 LINE L1 7708 7913 -48 225 367 88 27 chr6 133381846 133381993 -49033249 + L2 LINE L2 3117 3272 0 21 36 0 0 chr6 133382088 133382116 -49033126 + AT_rich Low_complexity Low_complexity 1 28 0 838 286 122 59 chr6 133382472 133382988 -49032254 + L2 LINE L2 2761 3311 -2 2234 120 0 0 chr6 133383244 133383545 -49031697 - AluSx SINE Alu -11 301 1 2741 125 7 7 chr6 133383641 133384082 -49031160 + L1PB2 LINE L1 5711 6151 0 374 322 41 20 chr6 133384993 133385139 -49030103 + MIR3 SINE MIR 53 201 -7 23 0 0 0 chr6 133385156 133385179 -49030063 + AT_rich Low_complexity Low_complexity 1 23 0 243 88 0 0 chr6 133385593 133385627 -49029615 + (GA)n Simple_repeat Simple_repeat 2 35 0 26 50 0 0 chr6 133386421 133386461 -49028781 + AT_rich Low_complexity Low_complexity 1 40 0 2655 52 0 0 chr6 133387013 133387320 -49027922 + AluY SINE Alu 1 307 -4 21 0 0 0 chr6 133387545 133387566 -49027676 + AT_rich Low_complexity Low_complexity 1 21 0 1723 120 47 70 chr6 133387587 133387971 -49027271 + THE1C LTR MaLR 1 375 0 2468 61 0 19 chr6 133388038 133388349 -49026893 + AluY SINE Alu 1 305 -6 29 0 0 0 chr6 133389588 133389617 -49025625 + AT_rich Low_complexity Low_complexity 1 29 0 302 237 65 15 chr6 133389816 133389903 -49025339 - MIR SINE MIR -45 163 75 386 298 142 30 chr6 133390429 133390896 -49024346 + L2 LINE L2 2673 3221 -92 508 323 39 13 chr6 133390932 133391161 -49024081 - MIR SINE MIR 0 262 28 3727 119 51 8 chr6 133391368 133391949 -49023293 + Tigger3b DNA MER2_type 5 610 -621 2520 143 38 21 chr6 133391949 133392368 -49022874 - MSTB LTR MaLR 0 426 1 * 3597 112 63 2 chr6 133392368 133392958 -49022284 + Tigger3b DNA MER2_type 606 1231 0 2420 63 0 28 chr6 133395499 133395817 -49019425 + AluY SINE Alu 1 309 -2 339 202 21 43 chr6 133396472 133396566 -49018676 - MER34 LTR ERV1 0 542 451 2457 62 7 0 chr6 133397511 133397820 -49017422 + AluY SINE Alu 1 311 0 282 116 0 0 chr6 133397823 133397866 -49017376 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 615 197 14 56 chr6 133397874 133398016 -49017226 + BC200 scRNA scRNA 1 136 -64 1658 171 41 17 chr6 133398017 133398215 -49017027 + L1MB1 LINE L1 5814 6025 -143 1997 140 60 3 chr6 133398215 133398566 -49016676 + MER93b LTR ERV1 3 373 0 1658 171 41 17 chr6 133398566 133398712 -49016530 + L1MB1 LINE L1 6025 6166 -2 508 226 101 13 chr6 133398902 133399061 -49016181 - MIR SINE MIR 0 262 90 1450 186 46 63 chr6 133399066 133399434 -49015808 - MLT1A1 LTR MaLR 0 365 1 760 324 150 16 chr6 133399479 133399917 -49015325 - L2 LINE L2 -6 3266 2772 1787 156 0 33 chr6 133399918 133400220 -49015022 + AluSx SINE Alu 1 292 -20 579 338 34 4 chr6 133400423 133400657 -49014585 - L2 LINE L2 -938 2376 2136 2457 129 3 3 chr6 133400793 133401157 -49014085 + THE1B LTR MaLR 1 364 0 10133 100 22 65 chr6 133401157 133402807 -49012435 + THE1B-int LTR MaLR 1 1580 0 2644 104 0 6 chr6 133402807 133403173 -49012069 + THE1B LTR MaLR 1 364 0 1752 207 170 5 chr6 133404710 133405115 -49010127 - MER70A LTR ERVL 0 472 1 2147 179 48 24 chr6 133405346 133405764 -49009478 - MSTA LTR MaLR 0 428 1 509 284 45 0 chr6 133405959 133406114 -49009128 + MIR SINE MIR 92 253 -9 211 281 37 37 chr6 133406203 133406285 -49008957 + L2 LINE L2 3231 3312 -1 567 45 0 0 chr6 133407006 133407106 -49008136 + AluSp/q SINE Alu 216 315 0 753 156 21 0 chr6 133407377 133407518 -49007724 - L1MB4 LINE L1 -9 6171 6028 4606 165 27 62 chr6 133408088 133408771 -49006471 + L1MB3 LINE L1 4669 5374 -809 1037 213 94 57 chr6 133408771 133409123 -49006119 - MLT1A1 LTR MaLR 0 365 1 4606 165 27 62 chr6 133409123 133410015 -49005227 + L1MB3 LINE L1 5374 6174 -9 240 359 11 0 chr6 133410251 133410343 -49004899 - MIR3 SINE MIR -35 173 81 1963 144 62 9 chr6 133410932 133411252 -49003990 + MER1B DNA MER1_type 1 337 0 2060 127 3 0 chr6 133411262 133411553 -49003689 - AluSc SINE Alu -17 292 1 4627 186 29 16 chr6 133412804 133414653 -49000589 + L1MB8 LINE L1 4308 6177 -1 1276 176 40 22 chr6 133415144 133415371 -48999871 + AluJb SINE Alu 1 231 -81 661 293 47 21 chr6 133415677 133416086 -48999156 + L1MC4 LINE L1 7519 8042 0 230 239 0 0 chr6 133416180 133416226 -48999016 - L2 LINE L2 0 3313 3268 331 365 75 25 chr6 133416709 133416950 -48998292 - L2 LINE L2 -428 2886 2634 5181 179 67 57 chr6 133416970 133418606 -48996636 - L1MDa LINE L1 -3774 2766 1117 1018 134 40 40 chr6 133418608 133418809 -48996433 - THE1C LTR MaLR 0 375 175 2291 205 53 53 chr6 133418820 133419390 -48995852 - L1MDa LINE L1 -5967 573 4 1971 87 0 4 chr6 133419612 133419890 -48995352 + AluY SINE Alu 29 305 0 23 0 0 0 chr6 133420702 133420725 -48994517 + AT_rich Low_complexity Low_complexity 1 23 0 2398 125 55 0 chr6 133420778 133421162 -48994080 + MSTA LTR MaLR 22 426 -2 196 211 0 0 chr6 133421913 133421951 -48993291 - L2 LINE L2 -612 2702 2665 609 109 119 0 chr6 133421953 133422054 -48993188 + AluY SINE Alu 184 296 -15 181 262 49 0 chr6 133422083 133422144 -48993098 - L2 LINE L2 -781 2533 2470 3592 106 4 4 chr6 133422235 133422746 -48992496 + MER9 LTR ERVK 1 511 0 304 205 51 94 chr6 133422758 133422875 -48992367 + MER112 DNA MER1_type 8 119 -141 330 208 28 0 chr6 133422992 133423064 -48992178 - Charlie1a DNA MER1_type 0 1455 1382 * 2629 196 129 8 chr6 133423061 133423774 -48991468 - Charlie1a DNA MER1_type -492 963 165 721 191 38 0 chr6 133423751 133423882 -48991360 - Charlie1a DNA MER1_type -1313 142 7 * 202 286 0 0 chr6 133424153 133424202 -48991040 - L2 LINE L2 -9 3263 3215 1618 171 0 0 chr6 133424616 133424873 -48990369 + AluJb SINE Alu 50 306 -6 2689 83 58 21 chr6 133425134 133425566 -48989676 - LTR7 LTR ERV1 -2 448 1 2374 72 50 13 chr6 133425566 133425942 -48989300 - HERVH LTR ERV1 0 7713 7324 1326 130 19 0 chr6 133425942 133426158 -48989084 - HERVH LTR ERV1 -1894 5819 5600 4017 146 6 3 chr6 133426159 133426819 -48988423 - HERVH LTR ERV1 -2564 5149 4488 3154 112 6 2 chr6 133426821 133427321 -48987921 - HERVH LTR ERV1 -3720 3993 3492 911 120 7 0 chr6 133427311 133427461 -48987781 - HERVH LTR ERV1 -4423 3290 3140 * 14157 81 5 10 chr6 133427440 133429514 -48985728 - HERVH LTR ERV1 -4718 2995 931 6386 126 155 86 chr6 133429517 133431105 -48984137 - pTR5 LTR ERV1 0 2438 742 5732 95 12 29 chr6 133431104 133432055 -48983187 - HERVH LTR ERV1 -6779 934 1 * 2651 88 58 21 chr6 133432057 133432489 -48982753 - LTR7 LTR ERV1 -2 448 1 38 71 0 10 chr6 133432571 133432592 -48982650 + AT_rich Low_complexity Low_complexity 1 21 -76 1680 161 39 4 chr6 133432592 133432718 -48982524 + AluSx SINE Alu 1 121 -191 189 0 0 0 chr6 133432718 133432739 -48982503 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 1680 161 39 4 chr6 133432739 133432891 -48982351 + AluSx SINE Alu 121 289 -23 38 71 0 10 chr6 133432891 133432967 -48982275 + AT_rich Low_complexity Low_complexity 21 97 0 784 186 158 0 chr6 133433114 133433291 -48981951 - MER3 DNA MER1_type -4 205 1 262 284 79 31 chr6 133434463 133434590 -48980652 - MIR SINE MIR 0 262 130 3611 148 66 70 chr6 133434699 133435487 -48979755 - LTR1 LTR ERV1 0 785 1 335 349 82 33 chr6 133436198 133436528 -48978714 + L2 LINE L2 2717 3066 -206 2463 47 0 3 chr6 133436540 133436838 -48978404 - AluY SINE Alu -14 297 1 1516 216 31 14 chr6 133436849 133437206 -48978036 - MLT1A1 LTR MaLR -2 363 1 24 0 0 0 chr6 133438359 133438383 -48976859 + AT_rich Low_complexity Low_complexity 1 24 0 243 61 0 0 chr6 133438530 133438563 -48976679 + (GA)n Simple_repeat Simple_repeat 2 34 0 2402 102 0 0 chr6 133438600 133438903 -48976339 - AluSc SINE Alu 0 309 7 1038 146 54 5 chr6 133438921 133439126 -48976116 - L1PA16 LINE L1 0 6166 5952 821 170 0 0 chr6 133439126 133439267 -48975975 + L1 LINE L1 4081 4221 -1925 634 142 39 7 chr6 133440044 133440199 -48975043 + CT-rich Low_complexity Low_complexity 1 160 0 219 273 20 50 chr6 133441450 133441549 -48973693 + L2 LINE L2 3213 3308 -5 27 0 0 0 chr6 133441942 133441969 -48973273 + AT_rich Low_complexity Low_complexity 1 27 0 3415 116 4 4 chr6 133442157 133442664 -48972578 - L1PA15 LINE L1 -1 6164 5658 2028 272 32 59 chr6 133442666 133443756 -48971486 - L1PA12 LINE L1 -5702 1879 8 41 0 0 0 chr6 133443793 133443834 -48971408 + AT_rich Low_complexity Low_complexity 1 41 0 735 59 0 0 chr6 133443845 133443946 -48971296 - L1MA3 LINE L1 0 6305 6205 3868 115 13 2 chr6 133443946 133444558 -48970684 - L1MA3 LINE L1 -354 5951 5330 611 256 101 10 chr6 133444694 133444991 -48970251 + L1M4 LINE L1 2215 2538 -3608 1034 256 144 18 chr6 133445000 133445624 -48969618 + L1M4 LINE L1 2602 3304 -2842 3555 240 54 50 chr6 133445636 133446737 -48968505 + L1M4 LINE L1 3519 4629 -1517 6117 100 34 8 chr6 133446737 133447868 -48967374 - L1PA13 LINE L1 -1 6162 5010 3555 240 54 50 chr6 133447868 133448278 -48966964 + L1M4 LINE L1 4629 5036 -1110 890 181 52 5 chr6 133448314 133448524 -48966718 + L1MD2 LINE L1 6139 6358 -1 1216 229 4 0 chr6 133448639 133448892 -48966350 - MLT1A1 LTR MaLR 0 365 112 378 283 136 35 chr6 133449068 133449326 -48965916 + HAL1 LINE L1 920 1203 -1304 309 345 88 6 chr6 133450425 133450596 -48964646 + MIR SINE MIR 78 262 0 2393 94 0 0 chr6 133450706 133451015 -48964227 - AluSg SINE Alu -1 309 1 308 268 175 33 chr6 133451078 133451261 -48963981 - MIR SINE MIR -12 250 42 198 103 0 0 chr6 133451513 133451542 -48963700 + (GA)n Simple_repeat Simple_repeat 2 30 0 180 305 53 32 chr6 133452111 133452206 -48963036 - L3 LINE CR1 -660 917 821 358 232 0 0 chr6 133452451 133452520 -48962722 - MIR SINE MIR -122 140 72 5102 151 17 1 chr6 133452956 133453791 -48961451 - L1MC1 LINE L1 -6 6327 5480 362 243 7 88 chr6 133453816 133453952 -48961290 - MER94 DNA DNA 0 134 10 482 276 14 21 chr6 133453960 133454105 -48961137 - MIR SINE MIR -112 150 7 21 36 0 0 chr6 133455744 133455772 -48959470 + AT_rich Low_complexity Low_complexity 1 28 0 1300 238 129 33 chr6 133455964 133456525 -48958717 + MLT1E2 LTR MaLR 5 622 -4 1348 191 23 94 chr6 133456982 133457375 -48957867 - MLT1A1 LTR MaLR 0 365 1 353 319 22 14 chr6 133458254 133458392 -48956850 - MIR SINE MIR -75 187 49 2059 107 24 7 chr6 133458396 133458559 -48956683 - AluSg1 SINE Alu -14 295 123 204 67 0 0 chr6 133458559 133458589 -48956653 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2059 107 24 7 chr6 133458589 133458715 -48956527 - AluSg1 SINE Alu -186 123 1 1419 168 54 7 chr6 133458828 133459108 -48956134 - L1MB3 LINE L1 -3 6180 5888 1518 175 39 89 chr6 133459210 133459593 -48955649 + THE1B LTR MaLR 1 364 0 6216 87 44 0 chr6 133459593 133460477 -48954765 + THE1A-int LTR MaLR 1 923 -657 1622 52 5 0 chr6 133460474 133460687 -48954555 + THE1A-int LTR MaLR 1367 1580 0 * 1925 115 37 37 chr6 133460687 133461035 -48954207 + THE1A LTR MaLR 1 348 -7 795 244 178 15 chr6 133461249 133461708 -48953534 - MLT1G3 LTR MaLR -3 527 4 283 282 182 14 chr6 133461839 133462059 -48953183 - L2 LINE L2 -337 2977 2721 199 246 174 0 chr6 133462305 133462374 -48952868 - L2 LINE L2 -925 2389 2309 1127 285 105 27 chr6 133462528 133463171 -48952071 - L2 LINE L2 -1 3312 2638 70 24 0 0 chr6 133463171 133463255 -48951987 + AT_rich Low_complexity Low_complexity 1 84 0 395 278 21 49 chr6 133463255 133463399 -48951843 + L2 LINE L2 2526 2665 -649 315 217 30 24 chr6 133463451 133463617 -48951625 + (TTATA)n Simple_repeat Simple_repeat 1 167 0 32 26 0 0 chr6 133463618 133463657 -48951585 + AT_rich Low_complexity Low_complexity 1 39 0 412 274 24 32 chr6 133463706 133463830 -48951412 - L2 LINE L2 -649 2665 2543 31 26 0 0 chr6 133464736 133464774 -48950468 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr6 133464789 133464821 -48950421 + AT_rich Low_complexity Low_complexity 1 32 0 234 0 0 0 chr6 133465228 133465254 -48949988 + (T)n Simple_repeat Simple_repeat 1 26 0 2273 178 112 4 chr6 133465842 133466308 -48948934 - MLT2B1 LTR ERVL 0 520 5 8727 31 1 0 chr6 133466455 133467546 -48947696 - L1P LINE L1 -1381 4765 3674 227 233 14 0 chr6 133467546 133467619 -48947623 + MER69 DNA AcHobo 2339 2412 -114 1329 215 123 12 chr6 133468657 133469071 -48946171 + MER69 DNA AcHobo 1729 2188 -338 556 239 62 0 chr6 133469159 133469335 -48945907 + MER69 DNA AcHobo 2333 2519 -7 416 149 0 14 chr6 133469583 133469657 -48945585 + MADE1 DNA Mariner 8 80 0 206 390 26 52 chr6 133469803 133469957 -48945285 + L2 LINE L2 3123 3272 0 726 248 13 0 chr6 133470199 133470356 -48944886 + MER58A DNA MER1_type 2 160 0 217 365 100 19 chr6 133470642 133471012 -48944230 + L2 LINE L2 1903 2302 -1012 827 294 153 42 chr6 133471352 133471972 -48943270 - L2 LINE L2 0 3313 2609 943 288 61 27 chr6 133471975 133472385 -48942857 - LTR16A LTR ERVL 0 450 27 1977 283 78 31 chr6 133472411 133472650 -48942592 - L2 LINE L2 -704 2610 2384 2103 135 30 46 chr6 133472650 133473020 -48942222 - THE1B LTR MaLR 0 364 1 11283 102 8 8 chr6 133473020 133474599 -48940643 - THE1B-int LTR MaLR 0 1580 1 2212 126 30 33 chr6 133474599 133474964 -48940278 - THE1B LTR MaLR 0 364 1 1977 283 78 31 chr6 133474964 133475474 -48939768 - L2 LINE L2 -929 2385 1823 506 318 84 19 chr6 133477000 133477308 -48937934 + L2 LINE L2 2982 3309 -4 414 320 53 13 chr6 133477367 133477517 -48937725 + MIR3 SINE MIR 53 208 0 186 43 0 0 chr6 133477989 133478012 -48937230 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 311 302 23 0 chr6 133479880 133479966 -48935276 - L2 LINE L2 0 3272 3185 236 281 21 5 chr6 133480010 133480094 -48935148 + MIR SINE MIR 36 121 -87 460 0 33 0 chr6 133480733 133480793 -48934449 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 317 153 14 0 chr6 133480794 133480866 -48934376 + GA-rich Low_complexity Low_complexity 2 74 0 207 0 0 0 chr6 133481653 133481676 -48933566 + (T)n Simple_repeat Simple_repeat 1 23 0 708 186 86 10 chr6 133482410 133482696 -48932546 + MLT1B LTR MaLR 6 390 0 1842 215 8 3 chr6 133482918 133483281 -48931961 + MLT1A1 LTR MaLR 1 365 0 288 244 161 68 chr6 133484805 133485010 -48930232 + MER74A LTR ERVL 299 580 -42 391 349 126 26 chr6 133485512 133485942 -48929300 + L2 LINE L2 2288 2760 -554 2564 99 11 11 chr6 133490150 133490525 -48924717 + THE1C LTR MaLR 1 375 0 407 261 167 28 chr6 133490590 133490770 -48924472 - MER20 DNA MER1_type -14 205 1 687 88 9 18 chr6 133491594 133491708 -48923534 - L1PA13 LINE L1 -3 6160 6048 21 0 0 0 chr6 133492229 133492250 -48922992 + AT_rich Low_complexity Low_complexity 1 21 0 4085 218 104 60 chr6 133492545 133492920 -48922322 + L1MDa LINE L1 18 375 -6165 195 42 0 0 chr6 133492920 133492944 -48922298 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4085 218 104 60 chr6 133492944 133494090 -48921152 + L1MDa LINE L1 375 1755 -4785 3144 186 23 16 chr6 133494095 133494779 -48920463 + L1MD1 LINE L1 5554 6242 0 250 273 65 58 chr6 133496478 133496617 -48918625 + L3 LINE CR1 305 444 -1133 329 290 88 33 chr6 133497504 133497745 -48917497 - MIR SINE MIR 0 262 6 709 212 43 83 chr6 133498685 133498963 -48916279 - L1ME2 LINE L1 -116 6048 5782 791 288 31 67 chr6 133498967 133499325 -48915917 - MLT1H LTR MaLR -2 547 203 411 188 0 34 chr6 133499548 133499691 -48915551 + CT-rich Low_complexity Low_complexity 1 138 0 1319 134 0 37 chr6 133499694 133499910 -48915332 - AluSg/x SINE Alu -35 277 70 30 27 0 0 chr6 133500389 133500426 -48914816 + AT_rich Low_complexity Low_complexity 1 37 0 336 83 0 0 chr6 133500937 133500985 -48914257 + (TG)n Simple_repeat Simple_repeat 1 48 0 968 274 65 0 chr6 133501368 133501613 -48913629 - MIR SINE MIR 0 262 2 22 0 0 0 chr6 133501781 133501803 -48913439 + AT_rich Low_complexity Low_complexity 1 22 0 2137 139 0 0 chr6 133504056 133504359 -48910883 - AluSq SINE Alu -10 303 1 2135 269 14 29 chr6 133504382 133505053 -48910189 + L2 LINE L2 2274 2933 -339 726 267 11 0 chr6 133505957 133506137 -48909105 - L1PB4 LINE L1 -1 6155 5974 209 309 99 49 chr6 133506251 133506413 -48908829 - L2 LINE L2 -1391 1923 1754 386 296 102 48 chr6 133506416 133506751 -48908491 + L2 LINE L2 2233 2585 -729 215 286 89 89 chr6 133506919 133507132 -48908110 + L2 LINE L2 2824 3036 -236 334 319 128 22 chr6 133507350 133507663 -48907579 - L1MC4a LINE L1 -1899 5909 5564 241 171 0 43 chr6 133510867 133510937 -48904305 + (TTTAA)n Simple_repeat Simple_repeat 1 67 0 251 349 85 0 chr6 133510981 133511110 -48904132 - L2 LINE L2 -15 3298 3159 2238 83 13 3 chr6 133511739 133512040 -48903202 + AluSq SINE Alu 1 304 -9 797 229 48 39 chr6 133514290 133514707 -48900535 - Charlie4a DNA MER1_type -3 505 36 23 0 0 0 chr6 133514997 133515020 -48900222 + AT_rich Low_complexity Low_complexity 1 23 0 786 184 63 11 chr6 133515023 133515213 -48900029 - L1MA8 LINE L1 -7 6284 6085 2234 125 94 8 chr6 133515213 133515597 -48899645 + MSTA LTR MaLR 1 417 -11 1360 136 46 7 chr6 133515609 133515864 -48899378 - L1MA8 LINE L1 -202 5963 5829 2019 155 2 70 chr6 133516369 133516783 -48898459 + MLT1B LTR MaLR 3 388 -2 372 238 24 82 chr6 133517858 133518064 -48897178 - L2 LINE L2 0 3313 3120 30 0 0 0 chr6 133518348 133518378 -48896864 + AT_rich Low_complexity Low_complexity 1 30 0 2057 97 46 40 chr6 133518417 133518768 -48896474 - L1PA13 LINE L1 0 6163 5811 599 183 0 0 chr6 133519031 133519135 -48896107 - MSTD LTR MaLR -292 104 1 346 272 112 41 chr6 133519141 133519190 -48896052 - L2 LINE L2 -172 3141 3097 612 0 0 0 chr6 133519190 133519258 -48895984 + (TG)n Simple_repeat Simple_repeat 2 69 0 346 272 112 41 chr6 133519258 133519377 -48895865 - L2 LINE L2 -216 3097 2961 30 27 0 0 chr6 133519393 133519430 -48895812 + AT_rich Low_complexity Low_complexity 1 37 0 1562 157 148 21 chr6 133520285 133520616 -48894626 - MLT1A2 LTR MaLR 0 374 2 692 194 16 0 chr6 133522203 133522332 -48892910 - FLAM_C SINE Alu -1 132 2 21 36 0 0 chr6 133522693 133522721 -48892521 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr6 133522802 133522822 -48892420 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 204 295 82 16 chr6 133522836 133522897 -48892345 - L2 LINE L2 -38 3234 3170 5737 98 2 30 chr6 133522966 133523341 -48891901 - L1PA13 LINE L1 -4 6159 5775 1743 240 40 123 chr6 133523341 133523945 -48891297 + MLT2B3 LTR ERVL 1 554 0 5737 98 2 30 chr6 133523945 133524445 -48890797 - L1PA13 LINE L1 -388 5775 5308 219 114 0 0 chr6 133526315 133526350 -48888892 + (CA)n Simple_repeat Simple_repeat 2 36 0 1200 189 157 12 chr6 133526894 133527025 -48888217 - AluJo SINE Alu -18 284 173 360 0 0 0 chr6 133527025 133527065 -48888177 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 1200 189 157 12 chr6 133527065 133527181 -48888061 - AluJo SINE Alu -129 173 1 1704 167 22 67 chr6 133527418 133527810 -48887432 + MER67C LTR ERV1 3 401 -245 459 0 0 0 chr6 133528331 133528382 -48886860 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 269 371 79 50 chr6 133528416 133528656 -48886586 - L2 LINE L2 -49 3223 2977 * 423 309 127 23 chr6 133528652 133528872 -48886370 - MIR SINE MIR 0 262 20 215 331 147 13 chr6 133528910 133529067 -48886175 - L2 LINE L2 -291 2981 2804 1904 260 107 9 chr6 133529431 133530001 -48885241 + MLT1E2 LTR MaLR 1 626 0 224 259 37 0 chr6 133530537 133530591 -48884651 - L2 LINE L2 0 3272 3217 445 214 133 17 chr6 133530751 133530924 -48884318 + MER5C DNA MER1_type 88 280 -44 618 273 7 13 chr6 133531954 133532108 -48883134 - MIR3 SINE MIR -2 206 54 406 256 51 22 chr6 133532136 133532273 -48882969 - L1ME4a LINE L1 0 6121 5981 21 0 0 0 chr6 133533267 133533288 -48881954 + AT_rich Low_complexity Low_complexity 1 21 0 575 283 61 6 chr6 133535600 133535780 -48879462 - MIR SINE MIR -62 200 11 273 348 0 11 chr6 133535808 133535900 -48879342 - L2 LINE L2 -19 3294 3204 2117 188 69 59 chr6 133536225 133536735 -48878507 - MLT2B2 LTR ERVL 0 515 1 1372 313 104 14 chr6 133537529 133538403 -48876839 + L2 LINE L2 2175 3167 -146 243 0 0 0 chr6 133538403 133538430 -48876812 + (CA)n Simple_repeat Simple_repeat 1 27 0 1372 313 104 14 chr6 133538430 133538582 -48876660 + L2 LINE L2 3167 3304 -9 203 156 0 0 chr6 133539454 133539486 -48875756 + (CA)n Simple_repeat Simple_repeat 1 32 0 296 326 156 8 chr6 133540015 133540190 -48875052 - MIR SINE MIR -50 212 15 33 56 0 0 chr6 133540509 133540563 -48874679 + AT_rich Low_complexity Low_complexity 1 54 0 3337 78 81 95 chr6 133540794 133541374 -48873868 - THE1C-int LTR MaLR -1008 572 1 2449 108 0 14 chr6 133541379 133541732 -48873510 - THE1C LTR MaLR -27 348 1 10013 131 42 10 chr6 133541735 133543367 -48871875 - Tigger1 DNA MER2_type -732 1686 2 355 309 113 18 chr6 133543469 133543637 -48871605 - MIR SINE MIR -43 219 36 341 330 130 9 chr6 133544359 133544574 -48870668 - L2 LINE L2 -479 2835 2595 5987 183 38 55 chr6 133544665 133544784 -48870458 - L1MC3 LINE L1 -806 6979 6859 288 0 0 0 chr6 133544784 133544816 -48870426 + (TG)n Simple_repeat Simple_repeat 1 32 0 5987 183 38 55 chr6 133544816 133546112 -48869130 - L1MC3 LINE L1 -926 6859 5588 516 184 96 0 chr6 133546145 133546270 -48868972 - L1MD2 LINE L1 -78 6281 6145 341 226 151 19 chr6 133546321 133546427 -48868815 + MIR SINE MIR 128 247 -15 38868 34 24 1 chr6 133547156 133552756 -48862486 - L1PA2 LINE L1 0 6155 427 589 333 119 14 chr6 133552947 133553443 -48861799 - L2 LINE L2 -1167 2147 1600 22 35 0 0 chr6 133553460 133553489 -48861753 + AT_rich Low_complexity Low_complexity 1 29 0 308 289 16 25 chr6 133553605 133553726 -48861516 - LTR16C LTR ERVL 0 491 372 798 267 45 79 chr6 133553766 133554480 -48860762 + LTR41 LTR ERVL 1 767 -6 243 213 21 0 chr6 133554486 133554533 -48860709 - MER5B DNA MER1_type -130 48 1 2226 293 78 18 chr6 133554561 133555835 -48859407 + L1ME3 LINE L1 3917 5266 -880 246 171 53 0 chr6 133555838 133555914 -48859328 + (TA)n Simple_repeat Simple_repeat 2 81 0 1500 251 71 92 chr6 133555919 133556226 -48859016 + L1ME3 LINE L1 5263 5575 -587 230 81 27 0 chr6 133556226 133556263 -48858979 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 1500 251 71 92 chr6 133556263 133556505 -48858737 + L1ME3 LINE L1 5575 5821 -341 1699 151 23 7 chr6 133556505 133556804 -48858438 - AluJb SINE Alu -8 304 1 1500 251 71 92 chr6 133556804 133557172 -48858070 + L1ME3 LINE L1 5821 6161 -1 221 351 32 74 chr6 133557413 133557698 -48857544 - L2 LINE L2 -2224 1090 818 1096 316 54 15 chr6 133557713 133558118 -48857124 - LTR16A LTR ERVL -14 436 16 297 306 150 46 chr6 133558336 133558702 -48856540 + L2 LINE L2 396 799 -2515 4262 16 0 0 chr6 133558827 133559314 -48855928 - L1HS LINE L1 -2 6153 5667 * 9248 17 0 0 chr6 133559308 133560694 -48854548 + L1P1 LINE L1 4302 5687 -468 253 321 0 92 chr6 133561957 133562058 -48853184 - MIR3 SINE MIR -18 190 102 2834 86 11 0 chr6 133562058 133562429 -48852813 - THE1C LTR MaLR 0 375 1 253 321 0 92 chr6 133562429 133562458 -48852784 - MIR3 SINE MIR -106 102 72 343 322 99 36 chr6 133562814 133563118 -48852124 - L2 LINE L2 -2575 739 417 348 83 0 0 chr6 133564394 133564442 -48850800 + (TG)n Simple_repeat Simple_repeat 2 49 0 296 342 25 8 chr6 133564733 133564853 -48850389 + L3b LINE CR1 1280 1401 -182 2041 149 0 3 chr6 133565812 133566121 -48849121 - AluSx SINE Alu -4 308 1 1857 23 0 0 chr6 133566251 133566467 -48848775 - L1PA3 LINE L1 0 6155 5940 1767 172 32 101 chr6 133566470 133566936 -48848306 - MLT1D LTR MaLR -69 436 3 391 127 16 0 chr6 133566949 133567012 -48848230 + MLT1D LTR MaLR 440 503 -2 203 340 10 31 chr6 133567732 133567829 -48847413 - L3b LINE CR1 -134 1449 1355 2725 220 71 73 chr6 133568916 133569879 -48845363 + MER45R DNA AcHobo 1 961 -620 42 71 0 0 chr6 133569882 133569966 -48845276 + AT_rich Low_complexity Low_complexity 1 84 0 188 67 33 0 chr6 133569969 133569999 -48845243 + (TTAAA)n Simple_repeat Simple_repeat 1 31 0 2457 173 37 88 chr6 133570076 133570165 -48845077 + MER45R DNA AcHobo 969 1061 -520 1731 119 0 0 chr6 133570165 133570401 -48844841 - AluSx SINE Alu -25 287 52 2457 173 37 88 chr6 133570401 133570957 -48844285 + MER45R DNA AcHobo 1061 1581 0 4913 127 12 32 chr6 133571029 133571880 -48843362 - L1MA8 LINE L1 -17 6274 5441 186 167 0 0 chr6 133577255 133577291 -48837951 + (TG)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr6 133577541 133577561 -48837681 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 275 206 0 32 chr6 133577871 133577934 -48837308 - Alu SINE Alu -9 292 232 473 31 0 15 chr6 133578692 133578757 -48836485 - L1PA12 LINE L1 -5109 2475 2412 6022 62 6 11 chr6 133578806 133579605 -48835637 - L1PA12 LINE L1 -5370 2214 1268 875 210 6 30 chr6 133579899 133580066 -48835176 + FRAM SINE Alu 1 163 -3 181 282 0 0 chr6 133582277 133582316 -48832926 - MER5A DNA MER1_type -55 134 96 3891 165 18 23 chr6 133582406 133582564 -48832678 + L1MB2 LINE L1 5436 5593 -578 1585 152 28 82 chr6 133582564 133582920 -48832322 + MER1B DNA MER1_type 1 337 0 3891 165 18 23 chr6 133582920 133583501 -48831741 + L1MB2 LINE L1 5593 6171 0 26 0 0 0 chr6 133583719 133583745 -48831497 + AT_rich Low_complexity Low_complexity 1 26 0 2425 34 41 0 chr6 133583872 133584167 -48831075 - AluY SINE Alu -4 307 1 186 103 0 0 chr6 133585697 133585726 -48829516 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 242 271 59 12 chr6 133586565 133586650 -48828592 - MIR SINE MIR -120 142 54 2246 200 16 6 chr6 133586743 133587237 -48828005 + L1MB7 LINE L1 5677 6175 -9 649 268 270 14 chr6 133588306 133588826 -48826416 - L2 LINE L2 0 3313 2650 200 260 20 0 chr6 133589510 133589560 -48825682 + GA-rich Low_complexity Low_complexity 1 51 0 710 309 221 17 chr6 133591406 133591936 -48823306 - L3 LINE CR1 -81 1496 859 505 319 59 10 chr6 133592021 133592225 -48823017 + MIR SINE MIR 49 262 0 230 219 281 10 chr6 133592228 133592324 -48822918 - L3 LINE CR1 -816 761 640 41948 36 28 1 chr6 133592471 133598458 -48816784 + L1PA2 LINE L1 1 6152 -3 547 274 55 18 chr6 133598929 133599093 -48816149 + MIR SINE MIR 46 215 -47 248 375 80 33 chr6 133599466 133599802 -48815440 - L3 LINE CR1 -1206 371 20 278 67 22 0 chr6 133600639 133600684 -48814558 + (TC)n Simple_repeat Simple_repeat 1 46 0 339 25 0 0 chr6 133604123 133604163 -48811079 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr6 133604229 133604253 -48810989 + AT_rich Low_complexity Low_complexity 1 24 0 252 0 0 0 chr6 133604402 133604430 -48810812 + (TG)n Simple_repeat Simple_repeat 2 29 0 413 294 196 20 chr6 133605356 133605461 -48809781 + MLT1G1 LTR MaLR 33 118 -477 2776 118 26 5 chr6 133605461 133605878 -48809364 - MSTA LTR MaLR 0 428 3 413 294 196 20 chr6 133605878 133606225 -48809017 + MLT1G1 LTR MaLR 118 565 -30 412 333 8 8 chr6 133606255 133606378 -48808864 - MIR SINE MIR -63 145 23 21 36 0 0 chr6 133608231 133608259 -48806983 + AT_rich Low_complexity Low_complexity 1 28 0 1993 157 32 6 chr6 133608894 133609519 -48805723 + MER39 LTR ERV1 3 707 0 236 225 63 92 chr6 133611605 133611747 -48803495 + L2 LINE L2 2955 3092 -180 1798 163 51 0 chr6 133611833 133612164 -48803078 - MER7A DNA MER2_type 0 346 1 2114 108 7 3 chr6 133612471 133612767 -48802475 - AluY SINE Alu -14 297 1 21 0 0 0 chr6 133613074 133613095 -48802147 + AT_rich Low_complexity Low_complexity 1 21 0 242 150 50 17 chr6 133614243 133614303 -48800939 + CT-rich Low_complexity Low_complexity 4 65 0 5850 209 43 7 chr6 133614687 133616976 -48798266 + L1MC1 LINE L1 3960 6315 -18 274 159 0 0 chr6 133617400 133617444 -48797798 + MLT1E LTR MaLR 1 44 -549 381 54 0 18 chr6 133617473 133617516 -48797726 - MLT2A1 LTR ERVL 0 444 401 429 20 0 0 chr6 133617516 133617566 -48797676 + (TG)n Simple_repeat Simple_repeat 2 51 0 381 54 0 18 chr6 133617566 133617578 -48797664 - MLT2A1 LTR ERVL -43 401 390 397 141 45 28 chr6 133617578 133617755 -48797487 + (TA)n Simple_repeat Simple_repeat 1 180 0 41 0 0 0 chr6 133617755 133617796 -48797446 + AT_rich Low_complexity Low_complexity 1 41 0 311 157 39 39 chr6 133617900 133618078 -48797164 + (TA)n Simple_repeat Simple_repeat 2 179 0 2628 108 23 5 chr6 133618107 133618504 -48796738 - MLT2A1 LTR ERVL -40 404 1 1954 219 19 62 chr6 133618504 133618597 -48796645 + MLT1E LTR MaLR 86 181 -412 2490 149 49 0 chr6 133618597 133619005 -48796237 + MSTA LTR MaLR 1 428 0 1954 219 19 62 chr6 133619005 133619442 -48795800 + MLT1E LTR MaLR 181 593 0 217 375 0 23 chr6 133619499 133619587 -48795655 + MIR3 SINE MIR 93 178 -30 776 239 34 0 chr6 133620774 133620950 -48794292 - MER5A DNA MER1_type -1 188 7 22 56 0 0 chr6 133623094 133623130 -48792112 + AT_rich Low_complexity Low_complexity 1 36 0 300 296 23 11 chr6 133624142 133624230 -48791012 + MIR3 SINE MIR 105 193 -15 23 0 0 0 chr6 133624300 133624323 -48790919 + AT_rich Low_complexity Low_complexity 1 23 0 920 294 48 56 chr6 133625567 133626198 -48789044 + L1MB1 LINE L1 414 925 -5378 2968 262 51 39 chr6 133626360 133627987 -48787255 + L1MB1 LINE L1 805 2411 -4152 2159 100 0 0 chr6 133627987 133628267 -48786975 + AluSx SINE Alu 1 280 -32 2968 262 51 39 chr6 133628267 133628278 -48786964 + L1MB1 LINE L1 2411 2420 -4143 213 39 0 0 chr6 133628278 133628304 -48786938 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2968 262 51 39 chr6 133628304 133628476 -48786766 + L1MB1 LINE L1 2420 2640 -3923 811 191 13 7 chr6 133628500 133628659 -48786583 + FRAM SINE Alu 8 160 -16 11155 206 42 21 chr6 133628666 133632380 -48782862 + L1MB1 LINE L1 2615 6404 0 236 197 66 0 chr6 133632382 133632443 -48782799 - MIR SINE MIR -90 172 108 315 0 0 0 chr6 133634575 133634610 -48780632 + (CA)n Simple_repeat Simple_repeat 2 36 0 528 67 13 13 chr6 133635156 133635231 -48780011 + MADE1 DNA Mariner 5 79 -1 691 303 164 6 chr6 133635681 133635998 -48779244 + L2 LINE L2 2947 3313 0 22 56 0 0 chr6 133637844 133637880 -48777362 + AT_rich Low_complexity Low_complexity 1 36 0 1508 162 36 7 chr6 133639871 133640179 -48775063 - L1 LINE L1 -1276 4870 4554 1895 235 152 61 chr6 133640184 133640432 -48774810 - Charlie2a DNA MER1_type -109 2753 2529 2516 0 0 0 chr6 133640432 133640705 -48774537 - AluYa5 SINE Alu 0 311 39 1895 235 152 61 chr6 133640705 133640954 -48774288 - Charlie2a DNA MER1_type -333 2529 2304 2069 127 0 0 chr6 133640954 133641253 -48773989 - AluSx SINE Alu -3 309 11 1895 235 152 61 chr6 133641253 133641813 -48773429 - Charlie2a DNA MER1_type -558 2304 1576 2110 101 3 24 chr6 133641813 133642111 -48773131 - AluSg SINE Alu -18 292 1 1895 235 152 61 chr6 133642111 133642219 -48773023 - Charlie2a DNA MER1_type -1286 1576 1479 24 0 0 0 chr6 133642935 133642959 -48772283 + AT_rich Low_complexity Low_complexity 1 24 0 241 367 49 22 chr6 133645428 133645654 -48769588 + MLT1I LTR MaLR 73 304 -105 204 97 0 0 chr6 133645737 133645768 -48769474 + (CA)n Simple_repeat Simple_repeat 2 32 0 476 211 0 0 chr6 133649639 133649729 -48765513 - MER81 DNA DNA -24 90 1 33 25 0 0 chr6 133650119 133650159 -48765083 + AT_rich Low_complexity Low_complexity 1 40 0 1837 198 74 25 chr6 133650273 133650718 -48764524 - MLT1C LTR MaLR 0 467 1 404 273 45 32 chr6 133650958 133651178 -48764064 - HAL1 LINE L1 -24 2483 2261 972 150 6 0 chr6 133651269 133651436 -48763806 - L1M LINE L1 -906 5427 5260 21 57 0 0 chr6 133651445 133651480 -48763762 + AT_rich Low_complexity Low_complexity 1 35 0 7105 243 38 37 chr6 133651491 133652311 -48762931 - L1M4 LINE L1 -891 5255 4437 1695 216 10 48 chr6 133652311 133652723 -48762519 + MSTD LTR MaLR 1 396 0 6760 235 30 47 chr6 133652725 133654485 -48760757 + MSTD-int LTR MaLR 2 1731 -4 874 219 198 44 chr6 133654485 133654827 -48760415 + MSTD LTR MaLR 1 396 0 7105 243 38 37 chr6 133654827 133656442 -48758800 - L1M4 LINE L1 -1708 4438 2814 2269 223 32 2 chr6 133656736 133657208 -48758034 + MER67D LTR ERV1 1 486 -28 279 235 51 16 chr6 133657208 133657317 -48757925 + MER31B LTR ERV1 376 466 0 436 246 5 81 chr6 133657387 133657598 -48757644 - HAL1 LINE L1 -862 1645 1451 774 97 18 0 chr6 133657739 133657853 -48757389 - AluSx SINE Alu -1 311 196 1049 139 0 0 chr6 133657854 133657998 -48757244 - AluSx SINE Alu -166 146 3 2142 138 0 0 chr6 133658285 133658596 -48756646 - AluSx SINE Alu -1 311 1 524 265 101 43 chr6 133658687 133659125 -48756117 - HAL1 LINE L1 -1132 1375 913 512 285 36 76 chr6 133659171 133659473 -48755769 - L2 LINE L2 -84 3229 2940 458 271 34 11 chr6 133659488 133659665 -48755577 - HAL1 LINE L1 -1594 913 733 314 298 166 61 chr6 133659745 133660107 -48755135 - HAL1 LINE L1 -1891 616 217 2136 101 0 13 chr6 133660559 133660865 -48754377 + AluSc SINE Alu 1 302 -7 1998 127 16 25 chr6 133663409 133663724 -48751518 + AluSx SINE Alu 1 312 0 265 129 16 16 chr6 133664358 133664420 -48750822 + GA-rich Low_complexity Low_complexity 3 64 0 12862 191 43 48 chr6 133665152 133665622 -48749620 - L1MA5 LINE L1 0 6942 6471 1852 120 58 4 chr6 133665622 133665897 -48749345 - AluSg SINE Alu -16 294 5 12862 191 43 48 chr6 133665897 133666357 -48748885 - L1MA5 LINE L1 -471 6471 6010 2163 101 17 0 chr6 133666357 133666653 -48748589 - AluSc SINE Alu -8 301 1 12862 191 43 48 chr6 133666653 133670410 -48744832 - L1MA5 LINE L1 -932 6010 2304 207 0 0 0 chr6 133670410 133670433 -48744809 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 12862 191 43 48 chr6 133670433 133671488 -48743754 - L1MA5 LINE L1 -4638 2304 1245 504 296 0 28 chr6 133677203 133677382 -48737860 + (TG)n Simple_repeat Simple_repeat 1 174 0 1842 166 0 0 chr6 133677987 133678277 -48736965 - AluSx SINE Alu -20 292 3 339 375 0 42 chr6 133678405 133678549 -48736693 - MER91A DNA MER1_type -58 138 1 1439 56 0 0 chr6 133679143 133679321 -48735921 + L1PA3 LINE L1 5975 6152 -3 256 284 42 21 chr6 133679390 133679485 -48735757 + MIR SINE MIR 20 116 -146 279 0 0 0 chr6 133679535 133679566 -48735676 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr6 133680389 133680411 -48734831 + AT_rich Low_complexity Low_complexity 1 22 0 455 280 72 86 chr6 133681246 133681664 -48733578 + MLT1K LTR MaLR 151 562 -26 470 250 25 8 chr6 133682074 133682194 -48733048 + MLT1C LTR MaLR 5 126 -379 3776 160 94 23 chr6 133682196 133682965 -48732277 + LTR1B LTR ERV1 1 823 -3 722 244 113 14 chr6 133682999 133683274 -48731968 + MLT1C LTR MaLR 161 462 -5 242 224 145 13 chr6 133683857 133683933 -48731309 + MLT1K LTR MaLR 455 540 -48 797 218 6 17 chr6 133684066 133684245 -48730997 + MER5B DNA MER1_type 2 178 0 180 152 0 30 chr6 133684853 133684886 -48730356 + MIR SINE MIR 114 145 -117 406 282 85 65 chr6 133685194 133685442 -48729800 - MIR SINE MIR -8 254 2 28 0 0 0 chr6 133685827 133685855 -48729387 + AT_rich Low_complexity Low_complexity 1 28 0 2181 109 0 0 chr6 133686765 133687073 -48728169 - AluSq SINE Alu 0 308 1 29 60 0 0 chr6 133687410 133687460 -48727782 + AT_rich Low_complexity Low_complexity 1 50 0 218 409 0 31 chr6 133687759 133687886 -48727356 - L2 LINE L2 -214 3058 2936 551 303 110 18 chr6 133688043 133688271 -48726971 - MIR SINE MIR -3 259 11 2151 45 34 0 chr6 133688542 133688880 -48726362 + AluY SINE Alu 38 384 0 21 36 0 0 chr6 133688884 133688912 -48726330 + AT_rich Low_complexity Low_complexity 1 28 0 697 247 40 27 chr6 133688916 133689214 -48726028 + L1ME LINE L1 462 837 -5693 669 256 76 41 chr6 133689304 133689620 -48725622 + L1ME LINE L1 1265 1591 -4949 * 732 271 12 37 chr6 133689609 133689934 -48725308 - L1ME LINE L1 -5248 822 506 394 317 79 26 chr6 133689995 133690260 -48724982 + L1ME LINE L1 2201 2479 -4242 257 321 81 54 chr6 133690357 133690578 -48724664 - L2 LINE L2 -857 2457 2231 2239 97 0 0 chr6 133690867 133691155 -48724087 - AluSx SINE Alu -22 290 3 348 289 52 0 chr6 133691367 133691502 -48723740 - L2 LINE L2 -1 3312 3171 318 349 101 24 chr6 133692565 133692734 -48722508 - MIR3 SINE MIR -23 185 4 24 0 0 0 chr6 133693113 133693137 -48722105 + AT_rich Low_complexity Low_complexity 1 24 0 2117 70 4 0 chr6 133693621 133693892 -48721350 + L1PA8 LINE L1 5885 6156 -16 207 0 0 0 chr6 133693895 133693918 -48721324 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 223 357 8 70 chr6 133694917 133695046 -48720196 - L2 LINE L2 -2 3270 3150 431 290 126 38 chr6 133695240 133695478 -48719764 - MIR SINE MIR -3 259 1 554 320 52 30 chr6 133696495 133696764 -48718478 + Charlie8 DNA MER1_type 3 277 -2140 182 373 7 42 chr6 133696907 133697049 -48718193 - L2 LINE L2 0 3272 3136 2149 167 14 0 chr6 133697191 133697551 -48717691 - MER47A DNA MER2_type 0 366 2 201 196 0 0 chr6 133697551 133697597 -48717645 + (TA)n Simple_repeat Simple_repeat 2 47 0 678 268 123 13 chr6 133697697 133698032 -48717210 + MER57A LTR ERV1 20 403 0 214 331 31 47 chr6 133699850 133699977 -48715265 + L2 LINE L2 3179 3303 -10 326 263 68 53 chr6 133700290 133700423 -48714819 - L2 LINE L2 -1 3312 3178 49 18 0 0 chr6 133700617 133700673 -48714569 + AT_rich Low_complexity Low_complexity 1 56 0 373 214 145 0 chr6 133701471 133701588 -48713654 - MER94 DNA DNA 0 134 1 343 264 161 13 chr6 133702080 133702235 -48713007 + MIR SINE MIR 79 256 -6 300 309 51 39 chr6 133702448 133702626 -48712616 + L1M4 LINE L1 2941 3120 -3026 21 82 0 0 chr6 133704839 133704888 -48710354 + AT_rich Low_complexity Low_complexity 1 49 0 449 286 91 19 chr6 133706656 133706810 -48708432 + MLT1I LTR MaLR 57 221 -188 237 277 18 80 chr6 133707373 133707485 -48707757 + MIR3 SINE MIR 97 201 -7 253 115 77 254 chr6 133707807 133707937 -48707305 + MER53 DNA DNA 1 107 -82 1980 165 127 41 chr6 133708054 133708496 -48706746 + MLT2B1 LTR ERVL 1 480 -40 202 234 0 0 chr6 133708496 133708543 -48706699 + (TA)n Simple_repeat Simple_repeat 1 47 0 277 104 0 30 chr6 133708543 133708557 -48706685 + MLT2D LTR ERVL 377 390 -24 378 42 0 0 chr6 133708557 133708605 -48706637 + (CA)n Simple_repeat Simple_repeat 2 49 0 277 104 0 30 chr6 133708605 133708652 -48706590 + MLT2D LTR ERVL 390 414 0 320 330 101 52 chr6 133710118 133710870 -48704372 + L2 LINE L2 1219 2007 -1307 233 295 0 13 chr6 133711275 133711353 -48703889 - MIR SINE MIR -40 222 146 316 347 88 6 chr6 133711542 133711712 -48703530 + L2 LINE L2 2672 2855 -459 299 372 60 42 chr6 133711894 133712029 -48703213 - L2 LINE L2 -2748 566 435 252 59 0 0 chr6 133712029 133712063 -48703179 + (CA)n Simple_repeat Simple_repeat 1 34 0 299 372 60 42 chr6 133712063 133712260 -48702982 - L2 LINE L2 -2879 435 228 244 300 9 0 chr6 133713252 133713325 -48701917 + MIR SINE MIR 56 130 -78 2203 74 3 0 chr6 133715322 133715607 -48699635 + L1PA8 LINE L1 5886 6171 -1 21 0 0 0 chr6 133716660 133716681 -48698561 + AT_rich Low_complexity Low_complexity 1 21 0 2080 93 40 0 chr6 133717751 133718029 -48697213 + AluSg SINE Alu 1 289 -21 2205 211 92 51 chr6 133718101 133718653 -48696589 - L1ME1 LINE L1 -5 6161 5574 1579 151 14 7 chr6 133718653 133718931 -48696311 - L1PA15 LINE L1 0 6165 5886 2205 211 92 51 chr6 133718931 133719064 -48696178 - L1ME1 LINE L1 -592 5574 5448 541 238 56 19 chr6 133719053 133719213 -48696029 + L1ME1 LINE L1 5897 6062 -104 * 655 217 35 35 chr6 133719235 133719438 -48695804 + L1M4 LINE L1 4976 5178 -968 332 193 12 10 chr6 133719428 133719511 -48695731 + L1ME1 LINE L1 6091 6160 -6 * 485 250 59 0 chr6 133719519 133719655 -48695587 - L1ME1 LINE L1 -706 5460 5317 23197 178 18 32 chr6 133719675 133720595 -48694647 - L1MA3 LINE L1 0 7724 6792 2160 128 0 3 chr6 133720595 133720899 -48694343 - AluSq SINE Alu -10 303 1 23197 178 18 32 chr6 133720899 133723794 -48691448 - L1MA3 LINE L1 -932 6792 3857 2875 16 0 0 chr6 133723794 133724111 -48691131 - AluYb8 SINE Alu -1 317 1 23197 178 18 32 chr6 133724111 133728137 -48687105 - L1MA3 LINE L1 -3867 3857 14 999 230 106 0 chr6 133728139 133728469 -48686773 - L1ME1 LINE L1 -817 5329 4965 4000 221 29 24 chr6 133728469 133729467 -48685775 - Charlie1a DNA MER1_type -445 1010 8 353 264 94 0 chr6 133730481 133730587 -48684655 - MIR SINE MIR -121 141 26 2148 123 0 3 chr6 133730633 133730933 -48684309 - AluSx SINE Alu -13 299 1 2214 110 3 0 chr6 133732129 133732439 -48682803 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr6 133732489 133732517 -48682725 + AT_rich Low_complexity Low_complexity 1 28 0 1176 236 86 17 chr6 133732896 133733197 -48682045 + MLT2B1 LTR ERVL 1 322 -198 265 333 120 30 chr6 133733200 133733566 -48681676 - L2 LINE L2 -1371 1943 1545 2450 103 14 0 chr6 133733566 133733916 -48681326 - THE1A LTR MaLR 0 355 1 11170 104 11 6 chr6 133733916 133735488 -48679754 - THE1A-int LTR MaLR 0 1580 1 2568 100 11 0 chr6 133735488 133735839 -48679403 - THE1A LTR MaLR 0 355 1 216 0 0 0 chr6 133736422 133736446 -48678796 + (T)n Simple_repeat Simple_repeat 1 24 0 436 320 47 0 chr6 133736735 133736885 -48678357 + MIR SINE MIR 86 242 -20 498 294 46 63 chr6 133737002 133737240 -48678002 + MLT1H LTR MaLR 1 234 -315 760 244 80 10 chr6 133737362 133737563 -48677679 + MER58C DNA MER1_type 1 215 0 270 305 63 32 chr6 133737720 133737815 -48677427 - L2 LINE L2 -53 3219 3122 326 351 75 34 chr6 133737848 133738113 -48677129 - L2 LINE L2 -1948 1366 1091 190 143 0 54 chr6 133738361 133738417 -48676825 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 388 210 70 0 chr6 133738531 133738631 -48676611 - MER103 DNA DNA -49 117 11 233 310 186 28 chr6 133738808 133738953 -48676289 - L2 LINE L2 -4 3268 3101 755 100 0 0 chr6 133740568 133740668 -48674574 - LTR12 LTR ERV1 0 714 615 239 238 71 0 chr6 133740671 133740755 -48674487 - LTR30 LTR ERV1 -80 642 553 1400 64 0 279 chr6 133740781 133741154 -48674088 - LTR12 LTR ERV1 -440 274 6 809 99 0 92 chr6 133741461 133741602 -48673640 + AluSg/x SINE Alu 162 289 -21 27 49 0 0 chr6 133741854 133741895 -48673347 + AT_rich Low_complexity Low_complexity 1 41 0 1764 199 48 14 chr6 133742052 133742065 -48673177 + Charlie1b DNA MER1_type 71 82 -2679 2253 97 3 7 chr6 133742065 133742375 -48672867 + AluSg SINE Alu 1 309 -1 1764 199 48 14 chr6 133742375 133742799 -48672443 + Charlie1b DNA MER1_type 82 523 0 208 225 0 0 chr6 133743636 133743676 -48671566 + GA-rich Low_complexity Low_complexity 3 42 0 675 298 119 4 chr6 133744569 133744796 -48670446 - MIR SINE MIR 0 262 6 2703 96 5 3 chr6 133744796 133745170 -48670072 - THE1C LTR MaLR 0 375 1 791 300 37 92 chr6 133745338 133745771 -48669471 - MLT1I LTR MaLR 0 409 1 2114 117 0 3 chr6 133746292 133746603 -48668639 - AluSq SINE Alu 0 310 1 242 296 91 38 chr6 133748431 133748563 -48666679 + MIR SINE MIR 49 187 -75 1591 217 75 16 chr6 133748585 133748959 -48666283 - MSTD LTR MaLR 0 396 1 358 224 92 75 chr6 133751535 133751662 -48663580 + MIR SINE MIR 80 212 -50 2304 101 3 0 chr6 133751662 133751969 -48663273 + AluSp SINE Alu 1 308 -5 358 224 92 75 chr6 133751969 133752015 -48663227 + MIR SINE MIR 212 256 -6 304 307 36 36 chr6 133752639 133752776 -48662466 + MIR3 SINE MIR 65 201 -7 875 268 174 39 chr6 133754059 133754674 -48660568 + L2 LINE L2 1009 1706 -1608 3544 222 48 68 chr6 133754683 133755864 -48659378 + L1MC4a LINE L1 6645 7802 -6 2242 98 0 10 chr6 133755889 133756184 -48659058 - AluSg SINE Alu -18 292 1 869 293 131 26 chr6 133756186 133756643 -48658599 + L2 LINE L2 1706 2210 -1104 237 187 55 0 chr6 133758686 133758777 -48656465 + (TA)n Simple_repeat Simple_repeat 2 97 0 188 67 33 0 chr6 133759601 133759631 -48655611 + (TA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr6 133762189 133762211 -48653031 + AT_rich Low_complexity Low_complexity 1 22 0 185 333 0 17 chr6 133762537 133762597 -48652645 - MIR3 SINE MIR -13 195 137 25 0 0 0 chr6 133763211 133763236 -48652006 + AT_rich Low_complexity Low_complexity 1 25 0 278 321 122 0 chr6 133763796 133763927 -48651315 - MIR SINE MIR -11 251 105 351 367 13 25 chr6 133764179 133764259 -48650983 - MIR SINE MIR -28 234 155 2264 124 19 14 chr6 133764259 133764623 -48650619 - MER47A DNA MER2_type 0 366 1 351 367 13 25 chr6 133764623 133764779 -48650463 - MIR SINE MIR -107 155 1 2107 106 3 3 chr6 133765248 133765558 -48649684 + AluSx SINE Alu 1 310 0 24 67 0 0 chr6 133765633 133765678 -48649564 + AT_rich Low_complexity Low_complexity 1 45 0 203 152 0 0 chr6 133765846 133765879 -48649363 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 257 308 110 11 chr6 133766118 133766209 -48649033 - L2 LINE L2 -4 3268 3169 206 79 0 53 chr6 133766761 133766799 -48648443 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 27 0 0 0 chr6 133767017 133767044 -48648198 + AT_rich Low_complexity Low_complexity 1 27 0 183 361 30 45 chr6 133769940 133770073 -48645169 - L2 LINE L2 -7 3306 3176 1838 180 27 0 chr6 133770077 133770411 -48644831 - MER2 DNA MER2_type -1 343 1 1865 165 3 37 chr6 133770816 133771138 -48644104 + AluSx SINE Alu 1 311 -1 1618 221 17 15 chr6 133771193 133771554 -48643688 + MLT1A1 LTR MaLR 1 365 0 278 293 113 0 chr6 133771578 133771684 -48643558 - MIR SINE MIR -29 233 116 1893 56 0 4 chr6 133771775 133772006 -48643236 - AluY SINE Alu -10 301 72 904 308 65 62 chr6 133772040 133772730 -48642512 + L1M3d LINE L1 567 1075 -5578 972 264 51 29 chr6 133772856 133773278 -48641964 + L1M4 LINE L1 278 1134 -5519 1860 158 13 0 chr6 133773296 133773600 -48641642 + AluSx SINE Alu 1 308 -4 1159 191 4 32 chr6 133773653 133773905 -48641337 + L1M4 LINE L1 4172 4416 -2316 774 257 12 0 chr6 133773997 133774168 -48641074 - MLT1B LTR MaLR -4 386 214 2109 248 30 34 chr6 133774169 133774677 -48640565 + MLT2B3 LTR ERVL 1 506 -48 331 235 0 0 chr6 133774691 133774759 -48640483 + Tigger2 DNA MER2_type 1 68 -2650 * 2549 146 54 5 chr6 133774750 133775175 -48640067 + Tigger2 DNA MER2_type 2273 2718 0 313 140 0 0 chr6 133775175 133775222 -48640020 + MLT2B3 LTR ERVL 474 520 0 600 216 54 43 chr6 133775222 133775407 -48639835 - MLT1B LTR MaLR -174 191 5 417 229 164 138 chr6 133775530 133776066 -48639176 + MLT1K LTR MaLR 7 556 -32 282 357 133 7 chr6 133777062 133777460 -48637782 + L2 LINE L2 2566 3017 -255 193 333 26 58 chr6 133780570 133780726 -48634516 + MIR SINE MIR 66 216 -46 22 35 0 0 chr6 133781061 133781090 -48634152 + AT_rich Low_complexity Low_complexity 1 29 0 2706 13 0 0 chr6 133782104 133782405 -48632837 - AluYa5 SINE Alu -10 301 1 1910 208 22 48 chr6 133783849 133784353 -48630889 + L1M4 LINE L1 4461 4951 -1781 571 297 99 5 chr6 133785167 133785379 -48629863 + MIR SINE MIR 12 243 -19 1809 176 157 0 chr6 133786546 133786916 -48628326 + MSTA LTR MaLR 1 428 0 195 186 0 0 chr6 133786931 133786974 -48628268 + T-rich Low_complexity Low_complexity 1 43 0 520 261 127 72 chr6 133788958 133789249 -48625993 + L2 LINE L2 2998 3304 -9 1064 0 0 0 chr6 133789431 133789550 -48625692 + AluY SINE Alu 155 273 -38 1469 191 35 54 chr6 133789583 133790064 -48625178 + MSTB1 LTR MaLR 1 457 0 422 193 168 62 chr6 133790387 133790548 -48624694 + MER5B DNA MER1_type 1 178 0 616 288 65 18 chr6 133790697 133790867 -48624375 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr6 133795088 133795116 -48620126 + AT_rich Low_complexity Low_complexity 1 28 0 1387 177 143 69 chr6 133796183 133796618 -48618624 + MLT1C LTR MaLR 1 467 0 2263 53 14 7 chr6 133796625 133796930 -48618312 + AluY SINE Alu 1 307 0 1765 183 0 16 chr6 133796978 133797295 -48617947 - AluJb SINE Alu 0 312 1 358 328 17 0 chr6 133798054 133798170 -48617072 + L1ME LINE L1 5502 5619 -502 331 258 186 8 chr6 133798244 133798368 -48616874 - MER5A DNA MER1_type -1 188 43 2288 65 0 26 chr6 133799066 133799374 -48615868 - AluY SINE Alu -11 300 1 180 77 0 0 chr6 133800589 133800615 -48614627 + (CAATT)n Simple_repeat Simple_repeat 4 29 0 523 200 28 21 chr6 133800938 133801083 -48614159 - LTR37B LTR ERV1 0 468 323 217 306 0 0 chr6 133801112 133801174 -48614068 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 378 276 81 17 chr6 133801335 133801509 -48613733 - LTR37B LTR ERV1 -278 190 6 260 304 62 27 chr6 133801509 133801621 -48613621 + L2 LINE L2 3193 3308 -5 440 254 46 42 chr6 133802152 133802369 -48612873 + L1M4 LINE L1 4489 4706 -1440 1027 147 26 26 chr6 133803153 133803343 -48611899 - AluY SINE Alu -19 292 103 301 356 65 27 chr6 133803471 133803732 -48611510 - L2 LINE L2 -422 2892 2622 533 318 65 14 chr6 133803849 133804063 -48611179 - MIR SINE MIR -6 256 32 249 57 0 0 chr6 133804565 133804600 -48610642 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1789 156 0 17 chr6 133804610 133804899 -48610343 - AluSx SINE Alu -28 284 1 189 273 78 26 chr6 133806078 133806155 -48609087 - MIR3 SINE MIR -6 202 122 760 157 0 8 chr6 133806198 133806319 -48608923 + FLAM_C SINE Alu 1 122 -190 198 0 0 0 chr6 133806319 133806341 -48608901 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 760 157 0 8 chr6 133806341 133806353 -48608889 + FLAM_C SINE Alu 122 133 -179 216 67 0 0 chr6 133807412 133807442 -48607800 + (T)n Simple_repeat Simple_repeat 1 30 0 244 374 41 0 chr6 133808272 133808416 -48606826 + MIR SINE MIR 1 151 -57 230 295 54 71 chr6 133808814 133808926 -48606316 + L2 LINE L2 3163 3272 0 381 304 155 0 chr6 133809667 133809828 -48605414 + MER5A DNA MER1_type 4 189 0 207 0 0 0 chr6 133809860 133809883 -48605359 + (CAA)n Simple_repeat Simple_repeat 2 24 0 327 297 70 16 chr6 133810977 133811105 -48604137 - L2 LINE L2 -2 3270 3136 541 280 69 6 chr6 133811219 133811394 -48603848 - LTR16A1 LTR ERVL -7 450 265 198 0 0 0 chr6 133811526 133811548 -48603694 + (T)n Simple_repeat Simple_repeat 1 22 0 640 271 94 20 chr6 133812123 133812367 -48602875 - MIR SINE MIR 0 262 1 412 318 25 30 chr6 133813611 133813809 -48601433 - L1ME LINE L1 -433 5688 5492 334 283 219 11 chr6 133813955 133814142 -48601100 + MIR SINE MIR 8 233 -29 180 206 29 0 chr6 133814113 133814147 -48601095 + L2 LINE L2 3208 3242 -30 * 189 0 0 0 chr6 133814835 133814856 -48600386 + (A)n Simple_repeat Simple_repeat 1 21 0 2055 142 55 3 chr6 133815504 133815849 -48599393 + MER47A DNA MER2_type 1 363 -3 194 340 89 39 chr6 133816130 133816333 -48598909 - L2 LINE L2 -4 3309 3097 47 53 0 0 chr6 133819712 133819787 -48595455 + AT_rich Low_complexity Low_complexity 1 75 0 776 203 68 0 chr6 133819948 133820125 -48595117 - MER5A DNA MER1_type 0 189 1 212 331 151 0 chr6 133820190 133820353 -48594889 + MER91A DNA MER1_type 49 190 0 326 333 0 0 chr6 133820431 133820530 -48594712 + (CATG)n Simple_repeat Simple_repeat 1 99 0 40 37 0 0 chr6 133821437 133821491 -48593751 + AT_rich Low_complexity Low_complexity 1 54 0 2209 50 57 0 chr6 133822135 133822416 -48592826 - AluY SINE Alu -14 297 1 677 232 81 47 chr6 133823250 133823461 -48591781 - MER106A DNA MER1_type -18 218 1 278 96 0 39 chr6 133824622 133824674 -48590568 + (TAA)n Simple_repeat Simple_repeat 1 50 0 25 31 0 0 chr6 133825056 133825088 -48590154 + AT_rich Low_complexity Low_complexity 1 32 0 3626 158 107 128 chr6 133825832 133826398 -48588844 - L1MC2 LINE L1 -18 7754 7177 229 353 29 0 chr6 133826398 133826500 -48588742 - MLT1F1 LTR MaLR -428 139 35 3626 158 107 128 chr6 133826500 133826938 -48588304 - L1MC2 LINE L1 -595 7177 6137 541 202 8 16 chr6 133827391 133827640 -48587602 + GA-rich Low_complexity Low_complexity 1 246 0 337 286 105 64 chr6 133828355 133828526 -48586716 + MIR SINE MIR 41 218 -44 306 87 0 0 chr6 133828803 133828849 -48586393 + (CA)n Simple_repeat Simple_repeat 1 46 0 465 152 0 0 chr6 133829130 133829235 -48586007 + (CA)n Simple_repeat Simple_repeat 1 105 0 180 0 0 0 chr6 133829346 133829366 -48585876 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 665 96 36 27 chr6 133830264 133830485 -48584757 + (TA)n Simple_repeat Simple_repeat 1 223 0 22 0 0 0 chr6 133830587 133830609 -48584633 + AT_rich Low_complexity Low_complexity 1 22 0 238 247 25 37 chr6 133830986 133831067 -48584175 + L1MC4 LINE L1 7289 7368 -674 395 136 0 15 chr6 133831101 133831167 -48584075 + AluJ/FRAM SINE Alu 231 295 -7 22 35 0 0 chr6 133833957 133833986 -48581256 + AT_rich Low_complexity Low_complexity 1 29 0 886 264 9 0 chr6 133834142 133834362 -48580880 - MER58A DNA MER1_type 0 224 3 388 296 81 56 chr6 133834810 133835259 -48579983 + L2 LINE L2 2590 3059 -213 432 350 43 30 chr6 133837200 133837434 -48577808 - MIR SINE MIR -11 251 15 22 0 0 0 chr6 133837434 133837456 -48577786 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 133838280 133838301 -48576941 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 133839278 133839301 -48575941 + AT_rich Low_complexity Low_complexity 1 23 0 4206 62 7 0 chr6 133839631 133840182 -48575060 - L1PA7 LINE L1 0 6154 5600 3026 95 2 7 chr6 133840182 133840623 -48574619 + L1P LINE L1 4432 4870 -1276 1707 169 0 18 chr6 133840998 133841270 -48573972 + AluSx SINE Alu 14 280 -32 216 67 0 0 chr6 133841270 133841300 -48573942 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 195 42 0 0 chr6 133842095 133842119 -48573123 + (CA)n Simple_repeat Simple_repeat 2 25 0 25 65 0 0 chr6 133842583 133842629 -48572613 + AT_rich Low_complexity Low_complexity 1 46 0 23 68 0 0 chr6 133844248 133844292 -48570950 + AT_rich Low_complexity Low_complexity 1 44 0 600 276 73 51 chr6 133844330 133844904 -48570338 + L1MEd LINE L1 1023 1691 -799 412 313 57 43 chr6 133845384 133845614 -48569628 + L1MEd LINE L1 2114 2346 -3783 23 0 0 0 chr6 133846076 133846099 -48569143 + AT_rich Low_complexity Low_complexity 1 23 0 248 304 78 29 chr6 133848046 133848148 -48567094 - MIR SINE MIR -78 130 24 211 254 16 16 chr6 133848252 133848315 -48566927 - MIR SINE MIR -11 251 189 233 276 55 35 chr6 133848989 133849134 -48566108 + L1MC/D LINE L1 5748 5895 -1913 232 229 29 0 chr6 133849446 133849516 -48565726 + (TA)n Simple_repeat Simple_repeat 1 72 0 32 0 0 0 chr6 133849644 133849676 -48565566 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 133850233 133850262 -48564980 + AT_rich Low_complexity Low_complexity 1 29 0 369 0 0 0 chr6 133851909 133851950 -48563292 + (TG)n Simple_repeat Simple_repeat 2 42 0 308 264 9 38 chr6 133852851 133852957 -48562285 - Charlie7 DNA MER1_type -2509 103 1 1821 173 0 3 chr6 133853061 133853361 -48561881 - AluJb SINE Alu -13 299 1 185 215 31 77 chr6 133853363 133853428 -48561814 - MIR3 SINE MIR -22 186 125 510 331 105 27 chr6 133853429 133853800 -48561442 - L3 LINE CR1 -127 1450 1051 24 0 0 0 chr6 133853900 133853924 -48561318 + AT_rich Low_complexity Low_complexity 1 24 0 297 155 0 0 chr6 133855568 133855626 -48559616 + (TG)n Simple_repeat Simple_repeat 1 58 0 395 356 12 6 chr6 133857050 133857210 -48558032 - MIR3 SINE MIR -1 207 47 22 56 0 0 chr6 133857888 133857924 -48557318 + AT_rich Low_complexity Low_complexity 1 36 0 224 163 23 0 chr6 133857931 133857974 -48557268 - L2 LINE L2 -7 3306 3263 870 187 41 41 chr6 133858238 133858457 -48556785 - MER20 DNA MER1_type 0 219 1 1712 189 0 0 chr6 133858631 133858935 -48556307 + AluJo SINE Alu 2 305 0 219 203 0 0 chr6 133859477 133859536 -48555706 + T-rich Low_complexity Low_complexity 1 59 0 25 75 0 0 chr6 133859910 133859963 -48555279 + AT_rich Low_complexity Low_complexity 1 53 0 348 270 28 117 chr6 133860090 133860416 -48554826 - L1MC4a LINE L1 -1876 5932 5636 188 240 20 0 chr6 133860919 133860969 -48554273 - L2 LINE L2 0 3313 3263 199 266 94 31 chr6 133861123 133861187 -48554055 - L2 LINE L2 -4 3268 3201 1359 336 55 40 chr6 133861596 133863199 -48552043 + HERV16 LTR ERVL 2244 3959 -1526 427 347 48 0 chr6 133863306 133863473 -48551769 + HERV16 LTR ERVL 4205 4379 -1385 318 244 122 0 chr6 133863481 133863563 -48551679 - MLT1G1 LTR MaLR 0 595 504 749 281 122 46 chr6 133863598 133863926 -48551316 - MLT1G1 LTR MaLR -170 425 73 250 292 62 47 chr6 133863985 133864177 -48551065 + HERV16 LTR ERVL 4075 4269 -727 808 343 44 34 chr6 133864277 133864916 -48550326 + HERV16 LTR ERVL 4692 5336 -318 575 284 157 30 chr6 133865122 133865390 -48549852 + LTR16A LTR ERVL 144 445 -5 279 215 37 118 chr6 133865478 133865613 -48549629 + MER104 DNA Tc2 25 148 -32 930 327 83 51 chr6 133865745 133866660 -48548582 - L2 LINE L2 -569 2745 1802 344 223 33 25 chr6 133867706 133867827 -48547415 + GA-rich Low_complexity Low_complexity 2 123 0 881 271 154 22 chr6 133867934 133868690 -48546552 - L2 LINE L2 0 3313 2452 839 255 34 17 chr6 133869624 133869863 -48545379 + MIR SINE MIR 19 261 -1 290 352 85 11 chr6 133870043 133870343 -48544899 + L2 LINE L2 2942 3312 -1 965 165 6 22 chr6 133872633 133872815 -48542427 - AluJb SINE Alu 0 312 134 251 211 183 0 chr6 133873693 133873764 -48541478 + MER106B DNA MER1_type 903 986 -73 224 238 0 0 chr6 133874375 133874417 -48540825 + (TG)n Simple_repeat Simple_repeat 2 43 0 738 269 106 69 chr6 133874456 133874961 -48540281 + MLT1H1 LTR MaLR 41 595 0 1828 141 7 33 chr6 133875925 133876231 -48539011 + AluSq SINE Alu 1 298 -15 36 23 0 0 chr6 133877331 133877374 -48537868 + AT_rich Low_complexity Low_complexity 1 43 0 363 214 122 77 chr6 133877549 133877745 -48537497 - MIR SINE MIR -2 260 56 444 208 47 0 chr6 133877776 133877882 -48537360 - L1MA10 LINE L1 -14 6320 6210 1857 233 79 18 chr6 133877902 133878230 -48537012 - L1ME1 LINE L1 -306 5860 5554 2379 120 28 14 chr6 133878230 133878589 -48536653 - THE1B LTR MaLR 0 364 1 1857 233 79 18 chr6 133878589 133879027 -48536215 - L1ME1 LINE L1 -612 5554 5051 557 234 9 0 chr6 133879064 133879175 -48536067 - MLT1G1 LTR MaLR -483 112 1 2058 201 27 27 chr6 133879415 133880056 -48535186 - L1M2 LINE L1 -743 5403 4888 250 132 0 0 chr6 133880144 133880182 -48535060 + MLT1G1 LTR MaLR 1 38 -557 373 209 0 0 chr6 133880188 133880255 -48534987 - L1ME1 LINE L1 -1271 4875 4809 * 3448 147 62 37 chr6 133880253 133880864 -48534378 + L1MA9 LINE L1 5542 6175 -137 213 39 0 0 chr6 133880864 133880890 -48534352 + (CA)n Simple_repeat Simple_repeat 1 26 0 3448 147 62 37 chr6 133880890 133881000 -48534242 + L1MA9 LINE L1 6175 6281 -31 1994 76 4 4 chr6 133881013 133881276 -48533966 + AluY SINE Alu 33 295 -16 1165 182 27 143 chr6 133881320 133881733 -48533509 - MLT1A1 LTR MaLR 0 365 1 366 327 55 12 chr6 133881832 133881997 -48533245 - MIR SINE MIR -89 173 2 29 47 0 0 chr6 133883108 133883151 -48532091 + AT_rich Low_complexity Low_complexity 1 43 0 836 258 43 16 chr6 133883280 133883536 -48531706 + MER34 LTR ERV1 1 263 -279 180 0 0 0 chr6 133884178 133884198 -48531044 + (T)n Simple_repeat Simple_repeat 1 20 0 258 107 36 50 chr6 133886678 133886818 -48528424 + (TA)n Simple_repeat Simple_repeat 1 138 0 323 60 20 0 chr6 133887064 133887114 -48528128 + (CA)n Simple_repeat Simple_repeat 2 52 0 202 414 0 9 chr6 133887254 133887365 -48527877 - MIR SINE MIR -150 112 3 225 0 0 0 chr6 133887758 133887783 -48527459 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 2974 233 46 17 chr6 133887829 133888609 -48526633 - L1MDa LINE L1 -5073 1467 665 1374 204 52 21 chr6 133888622 133888911 -48526331 - AluJo SINE Alu -14 298 1 595 293 49 10 chr6 133889029 133889234 -48526008 - L1MDa LINE L1 -6307 233 21 491 165 0 0 chr6 133889259 133889344 -48525898 + L1ME1 LINE L1 1467 1551 -4989 4381 257 84 20 chr6 133889367 133889446 -48525796 + L1ME1 LINE L1 3468 3541 -2999 4180 208 27 18 chr6 133889446 133890301 -48524941 + MER21B LTR ERV1 1 863 0 4381 257 84 20 chr6 133890301 133891998 -48523244 + L1ME1 LINE L1 3541 5358 -1182 43096 40 5 1 chr6 133892006 133898077 -48517165 + L1PA4 LINE L1 57 6154 -1 2205 230 90 46 chr6 133898074 133899208 -48516034 + L1ME1 LINE L1 5376 6556 -4 * 198 0 0 0 chr6 133899237 133899259 -48515983 + (CA)n Simple_repeat Simple_repeat 2 23 0 796 150 0 8 chr6 133899594 133899727 -48515515 + FLAM_C SINE Alu 2 133 0 366 315 39 8 chr6 133900236 133900366 -48514876 - L2 LINE L2 0 3313 3180 261 274 67 0 chr6 133901358 133901518 -48513724 + L1ME3A LINE L1 1258 1438 -5092 445 264 69 7 chr6 133901548 133901692 -48513550 + L2 LINE L2 3156 3308 -5 795 278 112 22 chr6 133901922 133902303 -48512939 + L1ME3A LINE L1 4666 5011 -1529 2512 131 5 17 chr6 133902303 133902707 -48512535 - L1PA15 LINE L1 -5 6160 5762 795 278 112 22 chr6 133902707 133903002 -48512240 + L1ME3A LINE L1 5011 5403 -1137 893 200 28 6 chr6 133903057 133903237 -48512005 - MER20 DNA MER1_type -3 216 33 962 265 103 29 chr6 133903291 133903706 -48511536 + L1ME3A LINE L1 5466 5849 -715 989 263 0 0 chr6 133903706 133903930 -48511312 - MER58A DNA MER1_type 0 224 1 962 265 103 29 chr6 133903930 133904321 -48510921 + L1ME3A LINE L1 5849 6331 -233 229 304 167 10 chr6 133904405 133904507 -48510735 + L1ME3A LINE L1 6356 6473 -91 30 0 0 0 chr6 133904566 133904596 -48510646 + AT_rich Low_complexity Low_complexity 1 30 0 630 206 63 46 chr6 133904961 133905136 -48510106 + MER5B DNA MER1_type 1 178 0 1988 157 0 0 chr6 133906046 133906345 -48508897 + AluSx SINE Alu 1 299 -13 2633 45 0 0 chr6 133906990 133907301 -48507941 - AluY SINE Alu 0 311 1 235 318 47 23 chr6 133907439 133907568 -48507674 + MIR SINE MIR 53 184 -78 31 26 0 0 chr6 133907983 133908021 -48507221 + AT_rich Low_complexity Low_complexity 1 38 0 201 74 0 0 chr6 133908817 133908844 -48506398 + (T)n Simple_repeat Simple_repeat 1 27 0 261 94 0 75 chr6 133908845 133908898 -48506344 - L1MA1 LINE L1 -218 6084 6036 33 0 0 0 chr6 133909008 133909041 -48506201 + AT_rich Low_complexity Low_complexity 1 33 0 607 154 45 0 chr6 133909230 133909340 -48505902 + L2 LINE L2 3190 3304 -9 890 242 124 57 chr6 133910380 133910727 -48504515 + MLT2D LTR ERVL 1 378 -36 583 45 0 34 chr6 133910727 133910816 -48504426 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 890 242 124 57 chr6 133910816 133910856 -48504386 + MLT2D LTR ERVL 378 414 0 485 361 46 12 chr6 133911240 133911481 -48503761 + MIR SINE MIR 8 256 -6 222 375 62 0 chr6 133911769 133911865 -48503377 - MIR3 SINE MIR -93 115 14 606 165 0 0 chr6 133912255 133912352 -48502890 - FRAM SINE Alu -17 159 63 23 0 0 0 chr6 133912481 133912504 -48502738 + AT_rich Low_complexity Low_complexity 1 23 0 339 276 86 9 chr6 133912916 133913032 -48502210 - L2 LINE L2 0 3313 3189 311 140 0 0 chr6 133913791 133913841 -48501401 - L2 LINE L2 -2 3311 3262 324 0 0 0 chr6 133915521 133915557 -48499685 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 200 0 22 chr6 133915566 133915611 -48499631 + GA-rich Low_complexity Low_complexity 2 45 0 2992 226 13 5 chr6 133916071 133916685 -48498557 + MER82 DNA MER2_type 35 653 0 443 243 264 0 chr6 133916790 133916938 -48498304 + MER5A DNA MER1_type 1 187 -2 969 248 33 0 chr6 133917153 133917363 -48497879 - MER20 DNA MER1_type 0 219 3 8415 128 12 1 chr6 133918139 133919414 -48495828 + HSMAR2 DNA Mariner 7 1295 -7 229 196 20 20 chr6 133919585 133919636 -48495606 + MER94 DNA DNA 1 51 -83 1603 177 17 24 chr6 133920353 133920647 -48494595 + AluJb SINE Alu 4 295 -17 288 224 56 47 chr6 133921057 133921164 -48494078 - L2 LINE L2 -88 3225 3118 290 291 138 57 chr6 133921214 133921424 -48493818 - MIR SINE MIR -2 260 34 425 342 131 44 chr6 133921668 133922189 -48493053 - L2 LINE L2 -337 2977 2412 280 268 12 0 chr6 133923711 133923793 -48491449 - MLT1J1 LTR MaLR 0 446 364 2591 186 41 52 chr6 133923838 133924571 -48490671 - Charlie1 DNA MER1_type -4 2757 2033 296 340 10 0 chr6 133924579 133924676 -48490566 - Charlie1 DNA MER1_type -2663 98 1 * 470 328 95 12 chr6 133924676 133924914 -48490328 - MLT1J2 LTR MaLR -131 319 62 303 240 101 23 chr6 133925737 133925866 -48489376 - LTR33A LTR ERVL 0 523 385 249 235 10 20 chr6 133925868 133925966 -48489276 + CT-rich Low_complexity Low_complexity 1 97 0 609 168 11 45 chr6 133925981 133926160 -48489082 + C-rich Low_complexity Low_complexity 4 176 0 1433 181 43 50 chr6 133926160 133926463 -48488779 - AluJo SINE Alu -9 303 3 2870 168 28 13 chr6 133926645 133927114 -48488128 + MER70B LTR ERVL 1 476 -102 228 125 0 0 chr6 133927112 133927144 -48488098 + MER70A LTR ERVL 441 472 0 * 220 386 92 39 chr6 133927605 133927994 -48487248 + L2 LINE L2 2858 3267 -5 198 103 0 0 chr6 133927994 133928023 -48487219 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 366 103 39 0 chr6 133929817 133929895 -48485347 + (TA)n Simple_repeat Simple_repeat 1 81 0 350 330 54 73 chr6 133929965 133930373 -48484869 - L2 LINE L2 -129 3184 2787 364 219 84 8 chr6 133930470 133930589 -48484653 - L1ME LINE L1 -348 5773 5646 2301 298 94 57 chr6 133930917 133932349 -48482893 + L2 LINE L2 1300 2783 -531 2295 107 0 7 chr6 133933552 133933861 -48481381 - AluSg SINE Alu -3 307 1 22 0 0 0 chr6 133934926 133934948 -48480294 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 133935372 133935394 -48479848 + AT_rich Low_complexity Low_complexity 1 22 0 1276 161 18 0 chr6 133935618 133935841 -48479401 + MER30 DNA MER1_type 4 230 0 26 30 0 0 chr6 133935921 133935954 -48479288 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr6 133937313 133937346 -48477896 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr6 133938264 133938294 -48476948 + AT_rich Low_complexity Low_complexity 1 30 0 1922 131 35 3 chr6 133938328 133938618 -48476624 - AluJb SINE Alu -13 299 1 842 285 140 34 chr6 133938677 133939551 -48475691 - L1MEc LINE L1 -2492 3723 2758 1077 271 60 33 chr6 133939553 133940357 -48474885 - L1MEc LINE L1 -3472 2743 1953 858 304 74 57 chr6 133940468 133941436 -48473806 - L1MEc LINE L1 -4614 1782 798 2009 135 0 0 chr6 133942138 133942427 -48472815 + AluSx SINE Alu 1 289 -23 348 357 108 0 chr6 133942539 133942836 -48472406 - L2 LINE L2 -942 2372 2044 22 0 0 0 chr6 133944059 133944081 -48471161 + AT_rich Low_complexity Low_complexity 1 22 0 14899 27 6 0 chr6 133944945 133947495 -48467747 + L1PA4 LINE L1 3597 6153 -2 1425 162 0 4 chr6 133950172 133950401 -48464841 - AluSg/x SINE Alu 0 310 83 260 351 57 69 chr6 133951276 133951508 -48463734 + L2 LINE L2 2716 2949 -323 2386 51 0 3 chr6 133951508 133951800 -48463442 - AluY SINE Alu -20 291 1 260 351 57 69 chr6 133951800 133952132 -48463110 + L2 LINE L2 2949 3272 0 217 349 23 8 chr6 133953115 133953244 -48461998 + MIR SINE MIR 61 191 -71 1957 113 7 3 chr6 133953352 133953673 -48461569 + AluSx SINE Alu 1 322 0 1376 173 62 4 chr6 133953743 133954003 -48461239 - AluJb SINE Alu 0 312 38 1045 173 0 0 chr6 133954259 133954432 -48460810 - FRAM SINE Alu -5 171 1 206 242 75 8 chr6 133954749 133954869 -48460373 + (CTTAT)n Simple_repeat Simple_repeat 2 129 0 1414 188 46 7 chr6 133955878 133956181 -48459061 + MER61A LTR ERV1 1 315 -28 3059 67 0 0 chr6 133956272 133956659 -48458583 - L1PA4 LINE L1 -5752 394 8 40856 37 1 1 chr6 133956659 133962458 -48452784 + L1PA4 LINE L1 375 6171 0 1667 184 13 3 chr6 133962471 133962775 -48452467 + AluJb SINE Alu 4 310 -2 2307 75 0 26 chr6 133962845 133963153 -48452089 - AluY SINE Alu -11 300 1 2039 95 3 7 chr6 133964603 133964897 -48450345 + L1PA14 LINE L1 5867 6159 -2 180 0 0 0 chr6 133965260 133965280 -48449962 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1171 211 54 121 chr6 133965460 133965900 -48449342 + MLT1D LTR MaLR 3 402 -103 2192 99 0 13 chr6 133965900 133966212 -48449030 - AluSc SINE Alu -1 308 1 1171 211 54 121 chr6 133966212 133966310 -48448932 + MLT1D LTR MaLR 402 505 0 1544 187 3 35 chr6 133967742 133968057 -48447185 - AluJo SINE Alu -6 306 2 2192 105 7 3 chr6 133968302 133968608 -48446634 + AluSc SINE Alu 1 307 -2 254 261 134 45 chr6 133968613 133968747 -48446495 - MLT1L LTR MaLR -4 611 466 383 328 46 29 chr6 133968870 133969108 -48446134 - MLT1L LTR MaLR -335 280 39 24 32 0 0 chr6 133969595 133969626 -48445616 + AT_rich Low_complexity Low_complexity 1 31 0 2842 162 60 78 chr6 133970275 133970978 -48444264 + LTR8 LTR ERV1 1 690 -1 1937 122 11 0 chr6 133971573 133971892 -48443350 - AluSx SINE Alu 0 322 1 394 194 1 0 chr6 133971942 133972031 -48443211 + MLT1E3 LTR MaLR 502 622 -2 21 0 0 0 chr6 133972241 133972262 -48442980 + AT_rich Low_complexity Low_complexity 1 21 0 203 393 24 12 chr6 133972262 133972346 -48442896 + MIR3 SINE MIR 8 92 -116 264 59 0 0 chr6 133972992 133973026 -48442216 + (TC)n Simple_repeat Simple_repeat 2 35 0 2192 72 0 85 chr6 133973722 133974053 -48441189 - AluY SINE Alu -8 303 1 1112 296 75 54 chr6 133974205 133974224 -48441018 + LTR16A LTR ERVL 1 18 -432 2185 123 3 40 chr6 133974224 133974573 -48440669 - MER1B DNA MER1_type 0 337 2 1112 296 75 54 chr6 133974573 133975000 -48440242 + LTR16A LTR ERVL 18 449 -1 405 323 15 8 chr6 133975035 133975165 -48440077 + HERV16 LTR ERVL 57 187 -4809 1007 349 74 24 chr6 133975167 133975954 -48439288 + ERVL LTR ERVL 4242 5067 -697 429 312 89 80 chr6 133976452 133976766 -48438476 + LTR16A LTR ERVL 118 434 -16 387 308 42 0 chr6 133977571 133977714 -48437528 - MIR SINE MIR 0 262 114 384 317 132 21 chr6 133977714 133977957 -48437285 + L1 LINE L1 4081 4350 -1796 381 161 58 0 chr6 133978469 133978556 -48436686 + MER53 DNA DNA 95 186 -3 21 0 0 0 chr6 133978943 133978964 -48436278 + AT_rich Low_complexity Low_complexity 1 21 0 206 189 0 81 chr6 133979136 133979210 -48436032 + A-rich Low_complexity Low_complexity 5 72 0 2105 228 96 12 chr6 133979399 133979982 -48435260 - L1ME2 LINE L1 -2 6162 5531 682 302 22 7 chr6 133979969 133980244 -48434998 - L1MD1 LINE L1 -2497 3649 3371 * 4292 234 48 39 chr6 133980257 133981182 -48434060 + L1MD1 LINE L1 3681 4597 -1762 2377 80 0 13 chr6 133981182 133981495 -48433747 + AluY SINE Alu 1 309 -2 4292 234 48 39 chr6 133981495 133982650 -48432592 + L1MD1 LINE L1 4597 5779 -580 769 240 43 88 chr6 133982654 133982983 -48432259 + L1MD1 LINE L1 5925 6238 -4 1373 60 5 11 chr6 133983791 133983975 -48431267 - L1PA7 LINE L1 -2 6152 5970 261 346 59 52 chr6 133984187 133984340 -48430902 - L2 LINE L2 -11 3261 3108 352 325 114 0 chr6 133984596 133984719 -48430523 - L2 LINE L2 0 3272 3136 246 342 9 36 chr6 133986044 133986155 -48429087 + MIR SINE MIR 64 171 -91 22 56 0 0 chr6 133986301 133986337 -48428905 + AT_rich Low_complexity Low_complexity 1 36 0 541 226 65 0 chr6 133988130 133988254 -48426988 - FLAM_A SINE Alu -1 132 1 1136 155 53 35 chr6 133988987 133989271 -48425971 - L1MA4 LINE L1 -1 6299 6011 619 269 75 57 chr6 133990438 133990840 -48424402 + LTR16A LTR ERVL 1 409 -48 3701 174 57 79 chr6 133992178 133993081 -48422161 + MER21A LTR ERV1 1 883 -48 24 32 0 0 chr6 133994990 133995021 -48420221 + AT_rich Low_complexity Low_complexity 1 31 0 213 200 0 40 chr6 133995380 133995430 -48419812 + GA-rich Low_complexity Low_complexity 4 51 0 25 0 0 0 chr6 133995686 133995711 -48419531 + AT_rich Low_complexity Low_complexity 1 25 0 240 364 50 14 chr6 133995986 133996126 -48419116 + MIR3 SINE MIR 53 197 -11 2689 74 0 0 chr6 133996942 133997294 -48417948 + L1PA8 LINE L1 5816 6167 -5 220 206 0 48 chr6 133999339 133999402 -48415840 + GA-rich Low_complexity Low_complexity 2 61 0 190 362 172 20 chr6 133999663 134000064 -48415178 + L2 LINE L2 2265 2726 -588 183 338 89 59 chr6 134000113 134000350 -48414892 + L2 LINE L2 1681 1936 -1378 1964 128 7 3 chr6 134000350 134000639 -48414603 - AluSc SINE Alu -19 290 1 183 338 89 59 chr6 134000639 134000806 -48414436 + L2 LINE L2 1936 2097 -1217 534 335 78 52 chr6 134001089 134001584 -48413658 + L2 LINE L2 2215 2725 -589 1670 211 24 53 chr6 134001584 134002038 -48413204 + LTR47B LTR ERVL 1 441 -2 534 335 78 52 chr6 134002038 134002056 -48413186 + L2 LINE L2 2725 2741 -573 195 408 92 6 chr6 134002334 134002508 -48412734 + L2 LINE L2 2898 3086 -186 2143 134 31 0 chr6 134002941 134003292 -48411950 - THE1B LTR MaLR -2 362 1 9963 120 46 0 chr6 134003292 134004802 -48410440 - THE1B-int LTR MaLR 0 1580 1 1889 126 42 34 chr6 134004802 134005159 -48410083 - THE1B LTR MaLR 0 364 5 180 125 0 0 chr6 134006070 134006102 -48409140 + (CTG)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr6 134006604 134006631 -48408611 + AT_rich Low_complexity Low_complexity 1 27 0 199 207 122 49 chr6 134007213 134007295 -48407947 - MIR SINE MIR -1 261 174 1305 113 5 9 chr6 134007548 134007760 -48407482 + L1P3 LINE L1 2 212 -5663 2135 150 51 8 chr6 134007764 134008137 -48407105 + Tigger2 DNA MER2_type 2328 2716 -2 29 0 0 0 chr6 134009214 134009243 -48405999 + AT_rich Low_complexity Low_complexity 1 29 0 205 220 34 0 chr6 134009933 134009992 -48405250 + GA-rich Low_complexity Low_complexity 3 63 0 23 33 0 0 chr6 134010836 134010866 -48404376 + AT_rich Low_complexity Low_complexity 1 30 0 893 218 86 86 chr6 134010894 134011280 -48403962 + MSTB2 LTR MaLR 72 457 0 504 332 136 29 chr6 134011639 134012247 -48402995 + L1M4 LINE L1 3424 4106 -2040 540 131 0 0 chr6 134012614 134012698 -48402544 + MER41B LTR ERV1 1 84 -551 25 31 0 0 chr6 134013169 134013201 -48402041 + AT_rich Low_complexity Low_complexity 1 32 0 472 159 139 82 chr6 134013299 134013487 -48401755 - LTR48 LTR ERV1 0 757 432 * 1290 196 125 6 chr6 134013484 134013886 -48401356 - LTR48 LTR ERV1 -302 485 1 626 270 118 34 chr6 134013935 134014231 -48401011 + HAL1 LINE L1 1375 1695 -812 405 39 0 0 chr6 134014711 134014762 -48400480 + (CA)n Simple_repeat Simple_repeat 2 52 0 210 342 0 13 chr6 134016998 134017074 -48398168 + MIR SINE MIR 25 99 -109 213 121 0 0 chr6 134017277 134017310 -48397932 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 2000 105 7 7 chr6 134018291 134018567 -48396675 + AluSq SINE Alu 1 276 -37 438 69 0 0 chr6 134018572 134018630 -48396612 + (CA)n Simple_repeat Simple_repeat 1 58 0 455 305 79 25 chr6 134018631 134019025 -48396217 + L1ME LINE L1 5347 5761 -360 1731 150 38 7 chr6 134019307 134019600 -48395642 + Tigger2 DNA MER2_type 2417 2718 0 229 309 31 87 chr6 134019749 134020037 -48395205 + MLT1-int LTR MaLR 306 577 -794 29 0 0 0 chr6 134020475 134020504 -48394738 + AT_rich Low_complexity Low_complexity 1 29 0 308 323 0 0 chr6 134020511 134020610 -48394632 - MIR SINE MIR -1 261 163 259 265 60 27 chr6 134020637 134020822 -48394420 + L1ME LINE L1 5633 5823 -298 425 318 66 7 chr6 134020822 134020973 -48394269 - MIR SINE MIR -94 168 9 376 279 55 8 chr6 134022715 134022873 -48392369 + MIR3 SINE MIR 23 189 -19 365 333 61 40 chr6 134024621 134024849 -48390393 - MIR SINE MIR -11 251 19 331 263 35 84 chr6 134025341 134025721 -48389521 - L1M4 LINE L1 -2163 3983 3626 2317 86 0 13 chr6 134025743 134026047 -48389195 - AluY SINE Alu -11 300 1 21 36 0 0 chr6 134026203 134026231 -48389011 + AT_rich Low_complexity Low_complexity 1 28 0 246 331 121 0 chr6 134026366 134026490 -48388752 - L1MC/D LINE L1 -2055 5753 5615 338 247 0 32 chr6 134026584 134026677 -48388565 + L1MC4 LINE L1 6614 6703 -1339 205 182 23 0 chr6 134026914 134026958 -48388284 - MIR3 SINE MIR -49 159 115 449 70 0 14 chr6 134027790 134027861 -48387381 + (CA)n Simple_repeat Simple_repeat 2 71 0 321 26 0 0 chr6 134028941 134028979 -48386263 + (TG)n Simple_repeat Simple_repeat 2 39 0 403 370 87 5 chr6 134029206 134029414 -48385828 + MIR SINE MIR 2 226 -36 22 0 0 0 chr6 134029435 134029457 -48385785 + AT_rich Low_complexity Low_complexity 1 22 0 271 310 49 76 chr6 134030515 134030699 -48384543 - MIR SINE MIR 0 262 84 1797 139 75 33 chr6 134031739 134032099 -48383143 - THE1C LTR MaLR 0 375 1 9315 133 29 36 chr6 134032104 134033684 -48381558 - THE1C-int LTR MaLR -12 1568 1 1652 151 54 68 chr6 134033686 134033757 -48381485 - THE1C LTR MaLR -2 373 303 2355 74 3 0 chr6 134033757 134034053 -48381189 + AluY SINE Alu 1 297 -14 1652 151 54 68 chr6 134034053 134034351 -48380891 - THE1C LTR MaLR -72 303 9 2203 121 0 0 chr6 134035513 134035850 -48379392 + AluSq SINE Alu 9 345 0 489 269 32 23 chr6 134036286 134036458 -48378784 - MIR SINE MIR -40 222 50 186 169 46 0 chr6 134036532 134036597 -48378645 + (TA)n Simple_repeat Simple_repeat 2 69 0 869 151 0 20 chr6 134037765 134037911 -48377331 - FLAM_C SINE Alu 0 143 1 1731 156 0 4 chr6 134038696 134038966 -48376276 + AluJb SINE Alu 3 271 -41 227 277 10 30 chr6 134040156 134040257 -48374985 + (TA)n Simple_repeat Simple_repeat 2 100 0 217 381 0 0 chr6 134042117 134042214 -48373028 + MIR SINE MIR 98 194 -68 672 271 138 0 chr6 134042221 134042439 -48372803 - MIR SINE MIR -1 261 14 220 368 61 9 chr6 134042480 134042594 -48372648 + L2 LINE L2 2627 2746 -568 314 383 71 0 chr6 134042939 134043080 -48372162 + L2 LINE L2 3115 3265 -7 238 327 82 53 chr6 134043139 134043347 -48371895 - L2 LINE L2 -5 3267 3054 1826 140 3 11 chr6 134043390 134043676 -48371566 - AluSx SINE Alu -10 302 19 237 224 0 0 chr6 134043993 134044042 -48371200 + GA-rich Low_complexity Low_complexity 4 52 0 200 294 76 67 chr6 134044238 134044357 -48370885 + L2 LINE L2 3191 3310 -3 1051 277 85 26 chr6 134044500 134045135 -48370107 + L2 LINE L2 2645 3313 0 1366 218 38 0 chr6 134045759 134046048 -48369194 + LOR1b LTR ERV1 13 312 -149 393 306 0 16 chr6 134046546 134046670 -48368572 - MIR SINE MIR -54 208 87 682 269 8 100 chr6 134047013 134047199 -48368043 + MIR SINE MIR 22 179 -83 2271 92 3 7 chr6 134047199 134047505 -48367737 + AluSq SINE Alu 7 311 -2 682 269 8 100 chr6 134047505 134047578 -48367664 + MIR SINE MIR 179 257 -5 21 57 0 0 chr6 134047740 134047775 -48367467 + AT_rich Low_complexity Low_complexity 1 35 0 194 61 0 30 chr6 134048195 134048228 -48367014 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 216 0 0 0 chr6 134048363 134048387 -48366855 + (A)n Simple_repeat Simple_repeat 1 24 0 251 220 21 0 chr6 134048580 134048650 -48366592 - MIR SINE MIR -73 135 60 1082 76 0 0 chr6 134051021 134051153 -48364089 + AluSq/x SINE Alu 1 132 -180 1960 101 56 14 chr6 134051155 134051441 -48363801 + AluSc SINE Alu 1 298 -11 605 301 98 18 chr6 134051845 134052243 -48362999 + L1M4 LINE L1 4190 4619 -1527 854 234 37 0 chr6 134052330 134052518 -48362724 - MIR SINE MIR -5 257 63 205 262 33 0 chr6 134052654 134052715 -48362527 + (TA)n Simple_repeat Simple_repeat 2 64 0 248 248 90 7 chr6 134052956 134053113 -48362129 - L1ME LINE L1 -273 6133 5959 1011 91 0 0 chr6 134053213 134053356 -48361886 - L1MA5A LINE L1 -5 6292 6150 403 347 12 58 chr6 134053385 134053800 -48361442 - L1ME LINE L1 -510 5896 5501 429 222 129 35 chr6 134053921 134054092 -48361150 - L1M4 LINE L1 -3807 2339 2153 409 345 41 10 chr6 134054543 134054938 -48360304 - L1ME LINE L1 -899 1844 1362 1646 214 9 3 chr6 134054967 134055289 -48359953 - MLT1A1 LTR MaLR -12 353 30 256 250 37 56 chr6 134055661 134055769 -48359473 - L1ME LINE L1 -6011 361 256 189 0 0 0 chr6 134056814 134056835 -48358407 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 198 294 59 0 chr6 134056981 134057049 -48358193 - MIR3 SINE MIR -28 180 109 885 259 50 42 chr6 134058117 134058476 -48356766 + MLT1D LTR MaLR 144 505 0 489 342 35 18 chr6 134059335 134059563 -48355679 - MIR SINE MIR -3 259 28 198 0 0 0 chr6 134060478 134060500 -48354742 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 183 337 12 36 chr6 134060517 134060600 -48354642 - L2 LINE L2 -56 3257 3177 3178 21 0 0 chr6 134060810 134061182 -48354060 + L1PA2 LINE L1 5783 6154 -1 23 0 0 0 chr6 134061183 134061206 -48354036 + AT_rich Low_complexity Low_complexity 1 23 0 315 286 12 0 chr6 134061663 134061747 -48353495 + L2 LINE L2 677 761 -2553 1822 190 0 0 chr6 134061749 134062060 -48353182 - AluSx SINE Alu -1 311 1 6800 58 20 2 chr6 134062224 134063427 -48351815 - L1PA7 LINE L1 0 6469 5251 23 0 0 0 chr6 134063454 134063477 -48351765 + AT_rich Low_complexity Low_complexity 1 23 0 20947 97 13 0 chr6 134063579 134066597 -48348645 - L1PA7 LINE L1 -1204 5257 2200 1004 96 0 0 chr6 134066594 134066729 -48348513 - L1PA7 LINE L1 -6317 144 10 * 195 69 0 0 chr6 134067894 134067923 -48347319 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 233 269 28 54 chr6 134068563 134068672 -48346570 + MER5A DNA MER1_type 75 189 0 21 36 0 0 chr6 134069345 134069373 -48345869 + AT_rich Low_complexity Low_complexity 1 28 0 2170 126 0 0 chr6 134069376 134069686 -48345556 + AluSg SINE Alu 1 310 0 192 182 0 0 chr6 134073378 134073422 -48341820 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 2256 108 40 14 chr6 134073456 134073807 -48341435 - THE1B LTR MaLR -2 362 3 10712 114 17 3 chr6 134073809 134075366 -48339876 - THE1B-int LTR MaLR 0 1580 1 1857 138 73 29 chr6 134075368 134075709 -48339533 - THE1B LTR MaLR -2 362 7 570 98 0 0 chr6 134075709 134075791 -48339451 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 429 215 32 0 chr6 134076686 134076779 -48338463 + MLT1A1 LTR MaLR 1 96 -278 1422 255 14 8 chr6 134076783 134077140 -48338102 - MLT1A1 LTR MaLR -6 359 1 1157 211 36 46 chr6 134077140 134077420 -48337822 + MLT1A1 LTR MaLR 89 365 0 21 0 0 0 chr6 134078633 134078654 -48336588 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr6 134079598 134079647 -48335595 + AT_rich Low_complexity Low_complexity 1 49 0 287 261 15 45 chr6 134081031 134081165 -48334077 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 1320 290 86 40 chr6 134081826 134082034 -48333208 + L2 LINE L2 1555 1752 -1561 1983 92 0 4 chr6 134082034 134082295 -48332947 - AluSg SINE Alu -4 306 47 1320 290 86 40 chr6 134082295 134082926 -48332316 + L2 LINE L2 1752 3192 -121 182 271 52 42 chr6 134082950 134083046 -48332196 + L2 LINE L2 3144 3240 -73 4324 22 0 0 chr6 134083711 134084213 -48331029 - L1PA3 LINE L1 -8 6147 5646 481 206 81 62 chr6 134084413 134084573 -48330669 - L2 LINE L2 -1 3312 3150 477 244 50 103 chr6 134084578 134084857 -48330385 + L1ME4a LINE L1 5545 5802 -319 1825 154 28 64 chr6 134084857 134085246 -48329996 - THE1C LTR MaLR 0 375 1 477 244 50 103 chr6 134085246 134085326 -48329916 + L1ME4a LINE L1 5802 5885 -236 2198 112 3 3 chr6 134085696 134086008 -48329234 + AluSx SINE Alu 1 312 0 1239 137 191 72 chr6 134086115 134086450 -48328792 + THE1C LTR MaLR 1 375 0 226 151 38 0 chr6 134087446 134087499 -48327743 + L1MC4 LINE L1 6649 6703 -1339 344 273 91 52 chr6 134087952 134088183 -48327059 - HAL1 LINE L1 -4 2503 2264 292 266 38 13 chr6 134088306 134088385 -48326857 + MER82 DNA MER2_type 1 81 -572 2035 252 72 21 chr6 134088390 134088962 -48326280 + MER82 DNA MER2_type 53 653 0 2432 80 0 0 chr6 134089137 134089438 -48325804 - AluSx SINE Alu -11 301 1 579 286 125 56 chr6 134089469 134090386 -48324856 - HAL1 LINE L1 -737 1770 790 581 188 18 0 chr6 134090548 134090660 -48324582 - AluSx SINE Alu -3 306 193 1087 119 0 0 chr6 134090661 134090804 -48324438 - AluSx SINE Alu -167 146 4 2606 238 58 27 chr6 134090823 134091671 -48323571 - MER63C DNA MER1_type -48 882 9 180 229 0 0 chr6 134091942 134091977 -48323265 - L2 LINE L2 0 3313 3279 25 31 0 0 chr6 134094005 134094037 -48321205 + AT_rich Low_complexity Low_complexity 1 32 0 6697 166 34 16 chr6 134094227 134096452 -48318790 + L1MA3 LINE L1 4045 6305 0 212 130 22 22 chr6 134096461 134096507 -48318735 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 202 206 0 44 chr6 134096620 134096688 -48318554 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 480 294 46 26 chr6 134096992 134097186 -48318056 - MIR SINE MIR -62 200 3 191 222 67 0 chr6 134097624 134097669 -48317573 - L2 LINE L2 0 3272 3225 780 231 0 0 chr6 134097972 134098128 -48317114 - FRAM SINE Alu -10 156 1 30 27 0 0 chr6 134098209 134098246 -48316996 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr6 134101761 134101800 -48313442 + AT_rich Low_complexity Low_complexity 1 39 0 232 392 39 33 chr6 134102561 134102714 -48312528 - MIR SINE MIR -82 180 27 199 372 32 11 chr6 134102930 134103024 -48312218 - L2 LINE L2 -176 3096 3001 640 248 90 5 chr6 134106294 134106516 -48308726 + L1MCc LINE L1 19 259 -6164 682 270 60 106 chr6 134106807 134107337 -48307905 + L1MCc LINE L1 784 1289 -5134 655 260 168 7 chr6 134107355 134107659 -48307583 + L1ME1 LINE L1 5788 6140 -26 684 200 87 27 chr6 134107717 134107902 -48307340 + L1MCc LINE L1 19 214 -6209 39 74 0 0 chr6 134108125 134108206 -48307036 + AT_rich Low_complexity Low_complexity 1 81 0 21 0 0 0 chr6 134108458 134108479 -48306763 + AT_rich Low_complexity Low_complexity 1 21 0 332 294 153 43 chr6 134108746 134108981 -48306261 + MIR SINE MIR 2 262 0 229 310 69 11 chr6 134109659 134109746 -48305496 + MIR SINE MIR 60 151 -57 32 111 0 0 chr6 134110133 134110277 -48304965 + AT_rich Low_complexity Low_complexity 1 144 0 255 341 171 9 chr6 134110343 134110554 -48304688 + L2 LINE L2 2298 2542 -772 469 283 87 3 chr6 134110681 134111008 -48304234 + L1MCc LINE L1 2871 3180 -3761 5127 174 36 68 chr6 134111010 134112142 -48303100 + MER52A LTR ERV1 660 1755 0 2512 243 51 26 chr6 134112150 134112225 -48303017 + L1MCc LINE L1 3224 3296 -3645 2622 39 0 0 chr6 134112225 134112532 -48302710 + AluY SINE Alu 1 307 -4 2512 243 51 26 chr6 134112532 134113403 -48301839 + L1MCc LINE L1 3296 4193 -2748 1577 249 98 25 chr6 134113417 134114125 -48301117 + L1MCc LINE L1 4679 5437 -1504 1494 190 17 3 chr6 134114129 134114424 -48300818 + L1MC1 LINE L1 6030 6328 -5 315 300 33 25 chr6 134114960 134115080 -48300162 - MIR SINE MIR -40 222 102 1956 101 70 3 chr6 134115568 134115855 -48299387 - AluY SINE Alu -5 306 1 22 0 0 0 chr6 134115967 134115989 -48299253 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 134116404 134116425 -48298817 + AT_rich Low_complexity Low_complexity 1 21 0 1172 254 67 49 chr6 134116699 134117088 -48298154 + MLT2C1 LTR ERVL 1 396 -1 264 319 0 14 chr6 134117668 134117762 -48297480 - MER5A DNA MER1_type -32 146 54 805 204 13 0 chr6 134118820 134118977 -48296265 - FRAM SINE Alu -7 159 1 578 183 0 16 chr6 134119005 134119131 -48296111 + CT-rich Low_complexity Low_complexity 1 124 0 773 181 0 0 chr6 134119131 134119264 -48295978 - FLAM_C SINE Alu 0 143 11 22 0 0 0 chr6 134122236 134122258 -48292984 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 134122681 134122709 -48292533 + AT_rich Low_complexity Low_complexity 1 28 0 181 347 42 53 chr6 134122743 134122838 -48292404 - L2 LINE L2 -8 3264 3171 2471 103 46 0 chr6 134122947 134123295 -48291947 + THE1B LTR MaLR 1 364 0 8485 116 134 31 chr6 134123295 134124727 -48290515 + THE1B-int LTR MaLR 1 1580 0 2496 109 3 14 chr6 134124727 134125085 -48290157 + THE1B LTR MaLR 1 354 -10 207 0 0 0 chr6 134125114 134125137 -48290105 + (TCTA)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chr6 134125141 134125164 -48290078 + (CA)n Simple_repeat Simple_repeat 2 24 0 530 271 36 42 chr6 134126484 134126676 -48288566 + MIR SINE MIR 13 203 -59 2491 64 0 0 chr6 134126677 134126974 -48288268 + AluY SINE Alu 1 297 -14 1336 210 43 62 chr6 134126984 134127191 -48288051 - MLT1A1 LTR MaLR -1 364 166 2849 0 0 0 chr6 134127191 134127500 -48287742 + AluYa5 SINE Alu 1 309 -2 1336 210 43 62 chr6 134127500 134127663 -48287579 - MLT1A1 LTR MaLR -199 166 1 282 250 88 14 chr6 134128401 134128561 -48286681 + L1ME LINE L1 5306 5477 -644 827 209 87 0 chr6 134128712 134128908 -48286334 + L1M4 LINE L1 4062 4274 -1872 665 147 9 9 chr6 134128964 134129073 -48286169 + Tigger1 DNA MER2_type 39 147 -2271 * 1144 144 79 5 chr6 134129071 134129273 -48285969 + Tigger1 DNA MER2_type 2202 2418 0 836 285 104 39 chr6 134130426 134130840 -48284402 + MLT1J2 LTR MaLR 7 447 -3 196 347 0 28 chr6 134130964 134131036 -48284206 + L3 LINE CR1 1507 1576 -1 227 203 17 51 chr6 134132922 134132981 -48282261 + (CATTC)n Simple_repeat Simple_repeat 1 57 0 1658 108 131 0 chr6 134133162 134133421 -48281821 + AluY SINE Alu 1 293 -8 2223 99 3 3 chr6 134133422 134133726 -48281516 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr6 134134043 134134063 -48281179 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 244 315 120 24 chr6 134134909 134135189 -48280053 - L2 LINE L2 -4 3309 2949 180 0 0 0 chr6 134136701 134136721 -48278521 + (CA)n Simple_repeat Simple_repeat 1 20 0 13124 23 0 0 chr6 134137432 134139755 -48275487 + L1PA3 LINE L1 3830 6152 -3 1867 241 55 4 chr6 134140552 134141009 -48274233 - MER119 DNA MER1_type -103 480 1 459 329 94 8 chr6 134141345 134141579 -48273663 - L3b LINE CR1 -227 1356 1103 214 318 123 38 chr6 134142990 134143201 -48272041 - MIR SINE MIR -2 260 32 203 103 26 0 chr6 134143278 134143317 -48271925 + T-rich Low_complexity Low_complexity 2 41 0 1637 106 32 0 chr6 134143323 134143569 -48271673 - L1PA16 LINE L1 -9 6157 5904 2229 125 97 8 chr6 134143823 134144216 -48271026 + MSTA LTR MaLR 1 428 0 1733 194 53 19 chr6 134146845 134147222 -48268020 + MLT1B LTR MaLR 1 390 0 330 26 0 0 chr6 134147984 134148023 -48267219 + (TG)n Simple_repeat Simple_repeat 2 40 0 409 341 142 30 chr6 134148032 134148145 -48267097 + L2 LINE L2 2483 2582 -731 2282 104 3 0 chr6 134148145 134148452 -48266790 - AluSx SINE Alu -4 308 1 409 341 142 30 chr6 134148452 134148857 -48266385 + L2 LINE L2 2582 3050 -263 214 280 53 27 chr6 134148873 134148948 -48266294 + L2 LINE L2 3222 3298 -15 1651 124 30 4 chr6 134149816 134150082 -48265160 - L1MA5A LINE L1 0 6297 6025 2379 277 88 50 chr6 134151088 134151980 -48263262 + L1ME3 LINE L1 3788 4645 -1517 4161 184 28 11 chr6 134151980 134152849 -48262393 - L1MA4 LINE L1 -4 6296 5414 2379 277 88 50 chr6 134152849 134153854 -48261388 + L1ME3 LINE L1 4645 5761 -401 244 248 28 28 chr6 134153899 134154008 -48261234 + L1ME3 LINE L1 6051 6159 -3 568 322 93 20 chr6 134154273 134154829 -48260413 + L1MC4a LINE L1 5313 5909 -1899 3148 204 40 64 chr6 134155033 134155070 -48260172 + L1MB7 LINE L1 4662 4698 -1486 3383 79 9 2 chr6 134155070 134155525 -48259717 + LTR22A LTR ERVK 1 458 0 3148 204 40 64 chr6 134155525 134157042 -48258200 + L1MB7 LINE L1 4698 6182 -2 487 274 144 17 chr6 134158459 134158948 -48256294 - L1ME3A LINE L1 -208 5962 5404 1165 273 93 3 chr6 134159084 134159469 -48255773 - L1MD2 LINE L1 0 6359 5940 2300 94 0 0 chr6 134159469 134159778 -48255464 + AluY SINE Alu 1 309 -2 2761 210 58 17 chr6 134159791 134160828 -48254414 - L1MD2 LINE L1 -367 5875 4802 453 280 98 72 chr6 134161037 134161786 -48253456 - L1MD2 LINE L1 -1445 4701 3934 1365 212 7 23 chr6 134161793 134162095 -48253147 - AluJo SINE Alu -13 299 3 284 379 122 5 chr6 134162286 134162500 -48252742 + MIR SINE MIR 11 249 -13 22 0 0 0 chr6 134165582 134165604 -48249638 + AT_rich Low_complexity Low_complexity 1 22 0 2796 7 0 0 chr6 134165886 134166194 -48249048 + AluYb8 SINE Alu 1 308 -10 2223 122 40 0 chr6 134166194 134166548 -48248694 - L1PB1 LINE L1 -2 6206 5839 245 116 29 58 chr6 134166552 134166621 -48248621 + (TATAA)n Simple_repeat Simple_repeat 5 71 0 10434 189 64 12 chr6 134166645 134170570 -48244672 - L1PB1 LINE L1 -368 5840 1384 1952 159 0 0 chr6 134170570 134170866 -48244376 - AluSg SINE Alu -10 300 5 10434 189 64 12 chr6 134170866 134172326 -48242916 - L1PB1 LINE L1 -4824 1384 1 9076 176 14 6 chr6 134172293 134173915 -48241327 - L1PBa LINE L1 -5226 1637 2 * 1023 169 12 0 chr6 134173952 134174124 -48241118 + AluSg/x SINE Alu 124 297 -15 2158 106 3 3 chr6 134175357 134175649 -48239593 + AluSq SINE Alu 2 293 -20 181 161 0 54 chr6 134175972 134176028 -48239214 + CT-rich Low_complexity Low_complexity 4 56 0 432 248 188 20 chr6 134176206 134176355 -48238887 + MER5A DNA MER1_type 5 178 -11 473 294 99 47 chr6 134176609 134176820 -48238422 + MIR SINE MIR 31 252 -10 518 216 191 6 chr6 134176842 134177004 -48238238 - MER3 DNA MER1_type -1 208 17 2081 109 3 7 chr6 134177145 134177438 -48237804 + AluSq SINE Alu 1 292 -21 1686 133 19 105 chr6 134178319 134178634 -48236608 - AluJb SINE Alu -24 288 1 576 296 138 0 chr6 134178669 134178865 -48236377 - L2 LINE L2 -1706 1608 1386 876 281 116 45 chr6 134178865 134179382 -48235860 - L2 LINE L2 -2203 1111 558 279 235 176 10 chr6 134179383 134179485 -48235757 - L2 LINE L2 -2908 406 288 22 0 0 0 chr6 134180603 134180625 -48234617 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 134182393 134182413 -48232829 + (TTG)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr6 134182989 134183012 -48232230 + AT_rich Low_complexity Low_complexity 1 23 0 181 179 0 30 chr6 134183817 134183884 -48231358 + (TA)n Simple_repeat Simple_repeat 2 66 0 426 295 92 12 chr6 134184689 134184862 -48230380 + MIR SINE MIR 72 258 -4 23 0 0 0 chr6 134185066 134185089 -48230153 + AT_rich Low_complexity Low_complexity 1 23 0 287 304 47 7 chr6 134185099 134185247 -48229995 - MER103 DNA DNA -12 154 1 355 279 27 9 chr6 134185802 134185913 -48229329 - MIR SINE MIR -80 182 70 752 250 87 5 chr6 134186301 134186497 -48228745 + MER58A DNA MER1_type 7 218 -6 35 41 0 0 chr6 134187433 134187482 -48227760 + AT_rich Low_complexity Low_complexity 1 49 0 530 29 0 0 chr6 134187608 134187677 -48227565 - L1PA4 LINE L1 0 6155 6087 234 0 0 0 chr6 134188665 134188691 -48226551 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 31 0 0 0 chr6 134189245 134189276 -48225966 + AT_rich Low_complexity Low_complexity 1 31 0 478 213 118 7 chr6 134189440 134189576 -48225666 + MER104 DNA Tc2 29 179 -1 214 411 60 6 chr6 134190062 134190230 -48225012 - L3 LINE CR1 -638 939 763 576 276 35 0 chr6 134190288 134190462 -48224780 + L2 LINE L2 706 885 -2429 1428 269 82 25 chr6 134190487 134191008 -48224234 + L2 LINE L2 1955 2505 -809 960 256 49 3 chr6 134191037 134191322 -48223920 + L1ME LINE L1 5410 5707 -457 * 3926 248 85 46 chr6 134191321 134194174 -48221068 + L1MB1 LINE L1 1 2583 -3387 619 193 209 0 chr6 134194150 134194337 -48220905 + L1MB1 LINE L1 3163 3388 -2582 * 3074 145 25 2 chr6 134194359 134194868 -48220374 + L1PA16 LINE L1 5637 6157 -9 876 222 16 0 chr6 134194932 134195121 -48220121 - L1 LINE L1 -2194 3952 3761 6339 200 24 44 chr6 134195126 134197743 -48217499 + L1MB1 LINE L1 3423 5988 -4 864 249 145 65 chr6 134197808 134198518 -48216724 + L2 LINE L2 2535 3313 0 370 314 20 13 chr6 134198529 134198682 -48216560 - L3 LINE CR1 -882 695 542 599 303 81 10 chr6 134199202 134199400 -48215842 + MIR SINE MIR 4 215 -47 2306 88 3 3 chr6 134201162 134201468 -48213774 - AluY SINE Alu -5 306 1 206 315 144 27 chr6 134202157 134202268 -48212974 - MIR SINE MIR -64 144 21 815 233 9 41 chr6 134205421 134205640 -48209602 - MER20 DNA MER1_type -5 214 3 343 333 56 46 chr6 134205858 134206053 -48209189 + MIR SINE MIR 14 210 -52 2077 122 0 3 chr6 134206377 134206685 -48208557 - AluSg SINE Alu 0 307 1 187 302 0 0 chr6 134207351 134207394 -48207848 + L2 LINE L2 3009 3051 -262 2025 88 32 14 chr6 134207853 134208136 -48207106 - AluSc SINE Alu -11 298 11 180 342 173 25 chr6 134208356 134208395 -48206847 - L2 LINE L2 -107 3165 3133 1939 42 0 17 chr6 134208395 134208631 -48206611 - AluY SINE Alu -9 302 71 180 342 173 25 chr6 134208631 134208793 -48206449 - L2 LINE L2 -139 3133 2934 195 220 51 34 chr6 134209901 134209960 -48205282 - L3 LINE CR1 -620 957 898 247 380 49 7 chr6 134210217 134210359 -48204883 - MIR SINE MIR -78 184 37 474 293 273 0 chr6 134211755 134211953 -48203289 - MIR SINE MIR 0 262 11 300 261 108 36 chr6 134212571 134212682 -48202560 - MIR3 SINE MIR -18 190 72 294 296 161 19 chr6 134214474 134214636 -48200606 - MIR SINE MIR -18 244 60 523 278 137 13 chr6 134215308 134215535 -48199707 + MIR SINE MIR 5 259 -3 1177 175 56 17 chr6 134216844 134217078 -48198164 - AluJo SINE Alu -9 303 61 300 177 97 71 chr6 134217580 134217693 -48197549 - L1MC1 LINE L1 -1 6332 6217 * 3096 250 26 8 chr6 134217676 134218664 -48196578 - L1M4 LINE L1 -1830 4316 3304 371 273 74 16 chr6 134219521 134219642 -48195600 + L2 LINE L2 3186 3313 0 312 290 97 19 chr6 134219636 134219791 -48195451 - MIR SINE MIR -59 203 37 * 1401 183 132 29 chr6 134220724 134221035 -48194207 - MER7A DNA MER2_type -3 343 3 33 25 0 0 chr6 134221744 134221784 -48193458 + AT_rich Low_complexity Low_complexity 1 40 0 466 317 75 0 chr6 134221913 134222099 -48193143 - MIR SINE MIR -6 256 57 24 53 0 0 chr6 134222106 134222144 -48193098 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 134225832 134225853 -48189389 + AT_rich Low_complexity Low_complexity 1 21 0 2267 100 13 0 chr6 134225933 134226234 -48189008 - AluSx SINE Alu -7 305 1 369 0 0 0 chr6 134226446 134226487 -48188755 + (CA)n Simple_repeat Simple_repeat 2 42 0 989 260 21 21 chr6 134226683 134226925 -48188317 + MIR SINE MIR 15 256 -6 1132 198 16 29 chr6 134227374 134227616 -48187626 + AluJb SINE Alu 1 239 -73 261 341 38 15 chr6 134228362 134228494 -48186748 - MIR SINE MIR -110 152 18 1937 132 0 0 chr6 134229379 134229684 -48185558 + AluSx SINE Alu 2 306 0 237 333 75 8 chr6 134230268 134230388 -48184854 - L2 LINE L2 -2 3270 3143 449 209 19 82 chr6 134230658 134230779 -48184463 + MER69 DNA AcHobo 1 111 -1115 2693 182 26 42 chr6 134230779 134231346 -48183896 + MER68 LTR ERV1 5 562 0 449 209 19 82 chr6 134231346 134231382 -48183860 + MER69 DNA AcHobo 111 148 -1078 24 53 0 0 chr6 134231825 134231863 -48183379 + AT_rich Low_complexity Low_complexity 1 38 0 194 319 0 0 chr6 134231908 134231955 -48183287 - L2 LINE L2 -9 3263 3217 226 316 0 0 chr6 134231972 134232048 -48183194 + LTR16A LTR ERVL 16 91 -359 348 267 134 59 chr6 134232098 134232285 -48182957 + LTR16A LTR ERVL 236 436 -14 25 31 0 0 chr6 134232769 134232801 -48182441 + AT_rich Low_complexity Low_complexity 1 32 0 5213 149 5 23 chr6 134232801 134234151 -48181091 - L1PA16 LINE L1 -9 6157 4801 950 220 42 0 chr6 134234328 134234569 -48180673 - L1 LINE L1 -1310 4836 4586 185 255 0 21 chr6 134234642 134234689 -48180553 - MIR SINE MIR -187 75 30 915 161 0 0 chr6 134236738 134236875 -48178367 + FRAM SINE Alu 20 156 -20 723 305 57 0 chr6 134237109 134237319 -48177923 + MIR SINE MIR 14 235 -27 315 242 53 42 chr6 134237356 134237451 -48177791 + L2 LINE L2 3218 3313 0 211 305 49 37 chr6 134237529 134237611 -48177631 - MIR SINE MIR -176 86 4 333 0 0 0 chr6 134238374 134238411 -48176831 + (CA)n Simple_repeat Simple_repeat 2 38 0 1418 166 69 58 chr6 134239539 134239900 -48175342 - MLT1A1 LTR MaLR 0 365 1 243 0 0 0 chr6 134240033 134240060 -48175182 + (TG)n Simple_repeat Simple_repeat 2 28 0 519 250 161 17 chr6 134240669 134240905 -48174337 + Charlie7 DNA MER1_type 292 561 -2051 1985 88 0 4 chr6 134241058 134241319 -48173923 + AluY SINE Alu 36 295 -16 249 204 168 26 chr6 134241320 134241433 -48173809 + Charlie7 DNA MER1_type 2473 2601 -11 317 219 57 48 chr6 134241650 134241755 -48173487 - MIR SINE MIR -2 260 155 310 213 17 217 chr6 134241954 134242079 -48173163 + MIR SINE MIR 68 128 -134 1873 117 32 3 chr6 134242079 134242361 -48172881 - AluSg SINE Alu -20 290 1 310 213 17 217 chr6 134242361 134242465 -48172777 + MIR SINE MIR 128 251 -11 439 283 113 74 chr6 134242465 134242560 -48172682 + L1ME4a LINE L1 5519 5609 -512 1591 171 56 0 chr6 134242560 134242859 -48172383 + AluJb SINE Alu 1 314 0 439 283 113 74 chr6 134242859 134243250 -48171992 + L1ME4a LINE L1 5609 6025 -96 259 287 207 0 chr6 134245661 134245748 -48169494 - L2 LINE L2 -17 3296 3192 366 353 100 9 chr6 134245782 134246136 -48169106 - L2 LINE L2 -248 3065 2679 424 265 10 0 chr6 134246228 134246330 -48168912 - MER94 DNA DNA -1 133 31 1183 221 97 3 chr6 134246336 134246644 -48168598 - MER58B DNA MER1_type 0 341 5 338 209 8 134 chr6 134246715 134246849 -48168393 - MIR SINE MIR -77 185 69 25 0 0 0 chr6 134248892 134248917 -48166325 + AT_rich Low_complexity Low_complexity 1 25 0 182 179 26 0 chr6 134251195 134251234 -48164008 + MIR SINE MIR 173 212 -50 32 20 0 20 chr6 134252025 134252036 -48163206 + AT_rich Low_complexity Low_complexity 1 11 -38 1017 91 0 0 chr6 134252036 134252179 -48163063 + L1PA13 LINE L1 6014 6156 -7 32 20 0 20 chr6 134252179 134252217 -48163025 + AT_rich Low_complexity Low_complexity 11 49 0 387 339 64 0 chr6 134252979 134253150 -48162092 + MIR SINE MIR 22 203 -59 1555 40 0 10 chr6 134253653 134253851 -48161391 + L1PA5 LINE L1 5959 6154 0 26 30 0 0 chr6 134254177 134254210 -48161032 + AT_rich Low_complexity Low_complexity 1 33 0 441 227 11 0 chr6 134255136 134255224 -48160018 - Tigger7 DNA MER2_type -1 2490 2402 * 2503 200 28 38 chr6 134255220 134255750 -48159492 - Tigger7 DNA MER2_type -208 525 1 424 229 97 7 chr6 134258764 134258908 -48156334 + MER103 DNA DNA 8 164 -2 21 57 0 0 chr6 134260081 134260116 -48155126 + AT_rich Low_complexity Low_complexity 1 35 0 1586 154 95 3 chr6 134261911 134262196 -48153046 - AluSx SINE Alu -1 311 1 401 277 42 66 chr6 134264441 134264607 -48150635 - MIR SINE MIR -96 166 5 264 246 98 31 chr6 134264794 134265018 -48150224 + L1M4 LINE L1 2948 3186 -2960 300 297 91 47 chr6 134265378 134265654 -48149588 + L1M4 LINE L1 4080 4367 -1779 185 163 20 0 chr6 134265836 134265885 -48149357 + (TA)n Simple_repeat Simple_repeat 1 50 0 1833 104 89 0 chr6 134266761 134267030 -48148212 + AluSg SINE Alu 1 293 -17 4406 165 25 8 chr6 134270355 134271153 -48144089 + L1PA16 LINE L1 5355 6166 0 21 0 0 0 chr6 134271865 134271886 -48143356 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr6 134272516 134272563 -48142679 + AT_rich Low_complexity Low_complexity 1 47 0 4719 50 5 2 chr6 134272843 134272855 -48142387 + L1P LINE L1 2691 2701 -3445 4502 53 5 0 chr6 134272855 134273419 -48141823 - L1PA5 LINE L1 -5 6149 5583 4719 50 5 2 chr6 134273419 134274027 -48141215 + L1P LINE L1 2701 3313 -2833 275 330 39 10 chr6 134274460 134274563 -48140679 - L2 LINE L2 -5 3308 3203 1942 80 14 11 chr6 134274910 134275185 -48140057 - MER1A DNA MER1_type 0 529 254 640 124 150 9 chr6 134275221 134275334 -48139908 - AluSg SINE Alu -181 129 1 1789 151 0 4 chr6 134275335 134275600 -48139642 - MER1A DNA MER1_type -263 264 1 212 162 27 0 chr6 134275719 134275756 -48139486 + L2 LINE L2 3268 3305 -8 24 20 0 60 chr6 134275864 134275914 -48139328 + AT_rich Low_complexity Low_complexity 1 47 0 447 106 0 0 chr6 134276332 134276398 -48138844 + (TA)n Simple_repeat Simple_repeat 1 66 0 268 273 23 0 chr6 134276399 134276487 -48138755 + L1MC4 LINE L1 6614 6703 -1339 225 226 95 24 chr6 134276451 134276535 -48138707 - L1MC4 LINE L1 -1339 6703 6614 * 224 271 0 0 chr6 134276538 134276586 -48138656 + (TA)n Simple_repeat Simple_repeat 1 48 0 1167 33 59 0 chr6 134276731 134276883 -48138359 - L1PA4 LINE L1 -3 6152 5992 202 385 18 41 chr6 134277271 134277489 -48137753 - L2 LINE L2 -482 2832 2620 193 327 69 62 chr6 134277717 134277829 -48137413 - L2 LINE L2 -999 2315 2205 2303 85 0 16 chr6 134277829 134278134 -48137108 + AluSq SINE Alu 1 300 -13 193 327 69 62 chr6 134278134 134278281 -48136961 - L2 LINE L2 -1109 2205 2054 310 288 103 27 chr6 134278337 134278521 -48136721 - L2 LINE L2 -1429 1885 1688 1904 223 31 16 chr6 134278959 134279403 -48135839 - MER39 LTR ERV1 0 707 257 233 302 52 10 chr6 134279374 134279470 -48135772 - LTR48B LTR ERV1 -544 100 1 * 1067 117 72 14 chr6 134279490 134279713 -48135529 - L1MA9 LINE L1 -64 6248 6013 2155 107 7 0 chr6 134280278 134280567 -48134675 - AluSc SINE Alu -18 291 1 22 0 0 0 chr6 134281636 134281658 -48133584 + AT_rich Low_complexity Low_complexity 1 22 0 255 61 0 0 chr6 134282033 134282066 -48133176 + (TG)n Simple_repeat Simple_repeat 2 34 0 347 169 0 13 chr6 134282176 134282253 -48132989 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 5207 51 0 0 chr6 134282737 134283379 -48131863 + L1PA5 LINE L1 5513 6154 0 234 164 0 0 chr6 134283520 134283575 -48131667 + (TA)n Simple_repeat Simple_repeat 1 55 0 22 35 0 0 chr6 134283870 134283899 -48131343 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 134284622 134284653 -48130589 + AT_rich Low_complexity Low_complexity 1 31 0 2758 93 0 0 chr6 134286022 134286386 -48128856 + THE1B LTR MaLR 1 364 0 9726 125 36 8 chr6 134286386 134287923 -48127319 + THE1B-int LTR MaLR 1 1580 0 2453 143 0 3 chr6 134287923 134288288 -48126954 + THE1B LTR MaLR 1 364 0 340 299 75 45 chr6 134288401 134288602 -48126640 + MIR SINE MIR 47 253 -9 21 0 0 0 chr6 134288933 134288954 -48126288 + AT_rich Low_complexity Low_complexity 1 21 0 416 330 61 10 chr6 134289954 134290151 -48125091 - MLT1L LTR MaLR -389 226 20 396 300 99 11 chr6 134290197 134290460 -48124782 + L1ME4a LINE L1 5562 5847 -274 25 90 0 0 chr6 134290564 134290631 -48124611 + AT_rich Low_complexity Low_complexity 1 67 0 326 323 31 51 chr6 134290734 134290991 -48124251 + L1ME4a LINE L1 5701 5952 -169 1679 216 61 37 chr6 134291197 134291687 -48123555 - MLT1D LTR MaLR -3 502 1 2517 243 56 19 chr6 134291833 134292658 -48122584 + L1ME1 LINE L1 5012 5882 -284 2292 85 0 0 chr6 134292658 134292939 -48122303 + AluSg SINE Alu 19 299 -11 2517 243 56 19 chr6 134292939 134293223 -48122019 + L1ME1 LINE L1 5882 6154 -12 22 35 0 0 chr6 134293567 134293596 -48121646 + AT_rich Low_complexity Low_complexity 1 29 0 2277 127 0 0 chr6 134293738 134294046 -48121196 - AluSx SINE Alu -4 308 1 2035 164 6 0 chr6 134294105 134294429 -48120813 - MER1B DNA MER1_type 0 339 14 592 296 58 33 chr6 134294558 134294801 -48120441 - MIR SINE MIR -2 260 12 229 294 110 37 chr6 134295187 134295296 -48119946 + L2 LINE L2 3173 3289 -24 191 374 36 36 chr6 134295343 134295482 -48119760 - L2 LINE L2 -556 2758 2620 308 175 309 0 chr6 134296148 134296245 -48118997 + MER94 DNA DNA 1 127 -7 1270 238 62 34 chr6 134297310 134297667 -48117575 + MLT1G1 LTR MaLR 1 367 -228 1050 101 38 0 chr6 134297703 134297862 -48117380 + MER30 DNA MER1_type 3 167 -63 890 225 31 14 chr6 134298221 134298443 -48116799 + MER30 DNA MER1_type 1 226 -4 720 236 108 0 chr6 134298446 134298641 -48116601 + MLT1G1 LTR MaLR 375 590 0 2919 156 18 2 chr6 134298970 134299477 -48115765 - L1MC1 LINE L1 -5 6328 5814 396 298 168 6 chr6 134299530 134299691 -48115551 + MIR SINE MIR 6 192 -70 1923 125 18 4 chr6 134300011 134300291 -48114951 + AluSx SINE Alu 1 284 -28 528 93 0 0 chr6 134300291 134300366 -48114876 + (TA)n Simple_repeat Simple_repeat 1 75 0 224 289 147 6 chr6 134301838 134301994 -48113248 - MIR SINE MIR -50 212 35 625 256 63 43 chr6 134303003 134303210 -48112032 + L2 LINE L2 3098 3308 -5 966 89 20 0 chr6 134303697 134303843 -48111399 - L1MA10 LINE L1 0 6334 6186 186 43 0 0 chr6 134304922 134304945 -48110297 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 22097 30 3 0 chr6 134304945 134308388 -48106854 - L1PA3 LINE L1 -8 6147 2694 4149 162 25 9 chr6 134308488 134309350 -48105892 + L1PBa LINE L1 1461 2336 -4527 5477 95 84 121 chr6 134309350 134310943 -48104299 + pTR5 LTR ERV1 743 2432 -6 2749 120 90 20 chr6 134310943 134311501 -48103741 + L1PBa LINE L1 2319 2915 -3948 1832 166 0 7 chr6 134311675 134311964 -48103278 + AluSx SINE Alu 7 293 -19 991 320 79 66 chr6 134312210 134313052 -48102190 + L2 LINE L2 2232 3077 -195 1446 289 89 20 chr6 134313076 134314045 -48101197 - L2 LINE L2 -2 3311 2186 397 327 26 0 chr6 134314250 134314403 -48100839 - L2 LINE L2 -1144 2170 2014 24 32 0 0 chr6 134316262 134316293 -48098949 + AT_rich Low_complexity Low_complexity 1 31 0 528 285 133 0 chr6 134316451 134316602 -48098640 + MER91B DNA MER1_type 17 187 -3 685 222 6 40 chr6 134316741 134316917 -48098325 + MER63A DNA MER1_type 41 210 0 489 250 47 14 chr6 134317121 134317269 -48097973 - MIR SINE MIR -108 154 2 252 211 0 0 chr6 134317351 134317403 -48097839 - MLT2C1 LTR ERVL 0 663 612 40 59 0 0 chr6 134317412 134317480 -48097762 + AT_rich Low_complexity Low_complexity 1 68 0 1129 198 42 50 chr6 134317480 134317825 -48097417 - MLT2C1 LTR ERVL -38 426 14 2041 184 31 20 chr6 134317829 134318285 -48096957 + MLT1C LTR MaLR 6 466 -1 342 340 0 31 chr6 134318895 134319057 -48096185 - MARNA DNA Mariner -367 219 63 310 211 16 178 chr6 134319279 134319464 -48095778 - MIR SINE MIR -92 170 16 550 193 0 83 chr6 134321350 134321495 -48093747 - FLAM_A SINE Alu 0 133 1 936 215 12 13 chr6 134321556 134321789 -48093453 - MSTD LTR MaLR 0 396 193 363 100 43 0 chr6 134321789 134321859 -48093383 + GA-rich Low_complexity Low_complexity 2 74 0 702 205 5 5 chr6 134321891 134322042 -48093200 - MSTC LTR MaLR -243 153 3 359 307 179 0 chr6 134322147 134322359 -48092883 - MLT1J LTR MaLR -261 250 1 259 351 61 44 chr6 134322439 134322553 -48092689 - L2 LINE L2 -47 3225 3110 296 338 96 36 chr6 134322610 134323081 -48092161 - L2 LINE L2 -1264 2050 1552 1280 293 51 110 chr6 134324178 134325403 -48089839 - L2 LINE L2 0 3313 2193 2314 110 0 0 chr6 134325403 134325703 -48089539 + AluSx SINE Alu 8 307 -5 1280 293 51 110 chr6 134325703 134326150 -48089092 - L2 LINE L2 -1120 2193 1721 237 198 33 11 chr6 134327563 134327654 -48087588 + CT-rich Low_complexity Low_complexity 1 93 0 2593 195 35 47 chr6 134327693 134328354 -48086888 - L1MB8 LINE L1 -84 6094 5442 2093 109 7 0 chr6 134328560 134328843 -48086399 + AluSx SINE Alu 13 297 -15 428 250 0 7 chr6 134328898 134329038 -48086204 + GA-rich Low_complexity Low_complexity 3 141 0 21 36 0 0 chr6 134329763 134329791 -48085451 + AT_rich Low_complexity Low_complexity 1 28 0 234 320 97 0 chr6 134333947 134334050 -48081192 + L2 LINE L2 3180 3292 -21 971 143 17 0 chr6 134334562 134334737 -48080505 + L1MA9 LINE L1 5845 6022 -290 1710 159 66 36 chr6 134335138 134335502 -48079740 + THE1C LTR MaLR 1 375 0 232 308 0 44 chr6 134336030 134336121 -48079121 - MIR SINE MIR -92 116 30 703 177 23 8 chr6 134336217 134336347 -48078895 + AluJo SINE Alu 1 132 -180 795 206 0 0 chr6 134336636 134336782 -48078460 + AluJo SINE Alu 137 282 -30 378 0 0 0 chr6 134336782 134336824 -48078418 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 208 343 27 0 chr6 134336978 134337051 -48078191 + L2 LINE L2 3189 3263 -9 244 325 14 14 chr6 134337220 134337349 -48077893 - MIR SINE MIR -31 177 48 22 35 0 0 chr6 134338946 134338975 -48076267 + AT_rich Low_complexity Low_complexity 1 29 0 21 100 0 0 chr6 134339231 134339301 -48075941 + AT_rich Low_complexity Low_complexity 1 70 0 5209 18 0 2 chr6 134340713 134341341 -48073901 - L1HS LINE L1 -3 6152 5526 561 211 0 0 chr6 134341386 134341519 -48073723 + L1MA4 LINE L1 6163 6295 -5 234 336 56 0 chr6 134342133 134342240 -48073002 - MIR SINE MIR 0 262 150 252 256 116 0 chr6 134342240 134342369 -48072873 + MER104 DNA Tc2 1 144 -36 267 198 123 88 chr6 134342401 134342505 -48072737 - MIR SINE MIR -56 152 31 308 260 221 0 chr6 134344149 134344253 -48070989 + FLAM_A SINE Alu 6 132 -1 370 379 38 35 chr6 134344529 134344869 -48070373 - L1MC4a LINE L1 -1700 6108 5768 328 304 24 32 chr6 134344886 134345011 -48070231 - L1MC4a LINE L1 -2109 5699 5576 805 173 0 0 chr6 134346592 134346719 -48068523 + FLAM_C SINE Alu 1 127 -16 290 265 24 12 chr6 134348681 134348764 -48066478 + GA-rich Low_complexity Low_complexity 2 85 0 540 199 22 52 chr6 134349223 134349359 -48065883 - L2 LINE L2 0 3313 3182 1557 240 55 50 chr6 134350733 134351290 -48063952 - MLT1F1 LTR MaLR 0 567 7 444 280 220 0 chr6 134351578 134351760 -48063482 + MIR SINE MIR 36 257 -5 21 0 0 0 chr6 134352039 134352060 -48063182 + AT_rich Low_complexity Low_complexity 1 21 0 364 268 30 61 chr6 134352315 134352479 -48062763 - HAL1b LINE L1 -1 1347 1189 761 181 0 0 chr6 134352496 134352623 -48062619 + FLAM_C SINE Alu 6 132 -11 207 264 0 46 chr6 134352754 134352841 -48062401 + GA-rich Low_complexity Low_complexity 4 86 0 2792 246 36 52 chr6 134353611 134354676 -48060566 - L1MEc LINE L1 -2770 3445 2450 3144 143 32 17 chr6 134354676 134355264 -48059978 - L1MA8 LINE L1 -4 6287 5691 2792 246 36 52 chr6 134355264 134355607 -48059635 - L1MEc LINE L1 -3765 2450 2103 7005 58 5 0 chr6 134355651 134356579 -48058663 - L1PA7 LINE L1 -6 6148 5216 502 268 24 37 chr6 134357125 134357289 -48057953 + MER5B DNA MER1_type 1 162 -16 339 44 0 0 chr6 134358442 134358487 -48056755 + (TG)n Simple_repeat Simple_repeat 2 46 0 306 67 0 0 chr6 134360874 134360919 -48054323 + (CA)n Simple_repeat Simple_repeat 2 46 0 304 287 36 48 chr6 134361660 134361827 -48053415 - LTR67 LTR ERVL -8 549 385 333 294 121 48 chr6 134362111 134362359 -48052883 - L2 LINE L2 -768 2546 2281 239 305 114 80 chr6 134362536 134362887 -48052355 - L2 LINE L2 -1254 2060 1698 1324 178 7 82 chr6 134362892 134363195 -48052047 - AluSx SINE Alu 0 312 33 1069 217 48 56 chr6 134363559 134364005 -48051237 - MER39 LTR ERV1 -5 702 67 2168 131 16 43 chr6 134364940 134365314 -48049928 + THE1B LTR MaLR 1 364 0 21 71 0 0 chr6 134365325 134365367 -48049875 + AT_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr6 134365701 134365738 -48049504 + AT_rich Low_complexity Low_complexity 1 37 0 259 216 27 27 chr6 134366596 134366670 -48048572 + MER112 DNA MER1_type 156 229 -31 17146 71 2 0 chr6 134368765 134371142 -48044100 + L1P LINE L1 767 3146 -3000 428 325 172 6 chr6 134371242 134371502 -48043740 - L3 LINE CR1 -903 674 346 1938 144 77 6 chr6 134371502 134371842 -48043400 + THE1B LTR MaLR 1 364 0 428 325 172 6 chr6 134371842 134371913 -48043329 - L3 LINE CR1 -1231 346 288 26 50 0 0 chr6 134372021 134372061 -48043181 + AT_rich Low_complexity Low_complexity 1 40 0 220 379 32 8 chr6 134372274 134372398 -48042844 + L2 LINE L2 3125 3251 -21 2345 67 40 0 chr6 134372490 134372789 -48042453 + AluY SINE Alu 1 311 0 361 329 68 19 chr6 134373280 134373441 -48041801 + MIR SINE MIR 16 184 -78 2451 288 93 12 chr6 134373730 134374792 -48040450 - L2 LINE L2 -1 3312 2138 574 93 0 0 chr6 134375677 134375763 -48039479 - L1P LINE L1 -1035 5111 5026 * 603 156 52 0 chr6 134375760 134375895 -48039347 - L1P LINE L1 -2910 3236 3095 519 262 24 12 chr6 134375890 134376054 -48039188 - L1MEc LINE L1 -4310 2086 1921 * 434 67 34 11 chr6 134376056 134376145 -48039097 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 6076 72 15 44 chr6 134376145 134377284 -48037958 - SVA Other Other -554 1368 433 1291 90 11 25 chr6 134377301 134377578 -48037664 - SVA Other Other -520 866 594 302 208 104 38 chr6 134378914 134379020 -48036222 + L1MEc LINE L1 428 540 -6181 308 109 0 18 chr6 134379070 134379125 -48036117 + (TAA)n Simple_repeat Simple_repeat 2 55 0 942 264 39 5 chr6 134379128 134379512 -48035730 + L1MEc LINE L1 1801 2239 -4482 691 0 0 48 chr6 134379516 134379620 -48035622 + (TCTCCC)n Simple_repeat Simple_repeat 3 101 0 5259 75 26 54 chr6 134379620 134380438 -48034804 + SVA Other Other 72 866 -520 263 317 117 52 chr6 134380658 134380888 -48034354 + L3 LINE CR1 1014 1258 -319 1494 248 37 21 chr6 134380912 134381348 -48033894 + LTR47B LTR ERVL 1 443 0 343 236 0 0 chr6 134381517 134381589 -48033653 + LTR40a LTR ERVL 1 72 -447 376 243 132 48 chr6 134381600 134381789 -48033453 - MER74B LTR ERVL -27 595 391 279 176 15 15 chr6 134381988 134382056 -48033186 - MER74B LTR ERVL -517 105 38 * 1592 250 52 14 chr6 134382037 134382477 -48032765 + LTR40a LTR ERVL 63 519 0 482 191 40 26 chr6 134384220 134384372 -48030870 + L1MDa LINE L1 1405 1558 -4982 186 43 0 0 chr6 134384388 134384411 -48030831 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 591 211 18 0 chr6 134384425 134384534 -48030708 + FLAM_A SINE Alu 11 121 -21 1203 258 108 36 chr6 134384544 134385469 -48029773 + L1MCa LINE L1 1268 2470 -3956 2439 97 0 0 chr6 134385469 134385778 -48029464 - AluSq SINE Alu -4 309 1 1203 258 108 36 chr6 134385778 134386213 -48029029 + L1MCa LINE L1 2470 2872 -3554 1888 209 112 33 chr6 134386218 134386832 -48028410 + L1MD2 LINE L1 5680 6342 -17 311 185 74 0 chr6 134386834 134386915 -48028327 + MER3 DNA MER1_type 123 209 0 232 208 0 0 chr6 134386872 134386920 -48028322 - MER3 DNA MER1_type -119 90 43 * 537 262 47 17 chr6 134387834 134388006 -48027236 - MER97a DNA MER1_type? -715 179 3 254 385 55 0 chr6 134388066 134388175 -48027067 + L2 LINE L2 3158 3272 0 1465 201 95 40 chr6 134388495 134388918 -48026324 - LTR16A1 LTR ERVL 0 457 12 278 132 15 73 chr6 134389235 134389303 -48025939 - THE1B LTR MaLR 0 364 301 306 273 189 0 chr6 134389403 134389535 -48025707 + L2 LINE L2 1564 1720 -1594 25 51 0 0 chr6 134389580 134389619 -48025623 + AT_rich Low_complexity Low_complexity 1 39 0 2048 149 3 0 chr6 134389864 134390166 -48025076 + AluSx SINE Alu 3 305 -7 599 300 86 4 chr6 134390192 134390449 -48024793 + L1M4 LINE L1 4702 4979 -1167 705 312 16 32 chr6 134390474 134390724 -48024518 + L2 LINE L2 2395 2640 -674 484 312 90 8 chr6 134390745 134391011 -48024231 - LTR16C LTR ERVL -70 421 134 323 322 144 6 chr6 134391108 134391288 -48023954 + L2 LINE L2 2624 2828 -486 285 242 78 128 chr6 134391344 134391650 -48023592 + L2 LINE L2 3021 3311 -2 12982 46 4 2 chr6 134391928 134394867 -48020375 - L1PA5 LINE L1 0 6154 3212 1270 229 61 28 chr6 134396973 134397335 -48017907 - MLT1A2 LTR MaLR 0 374 1 442 269 87 44 chr6 134397684 134397959 -48017283 + L1M4 LINE L1 5083 5369 -777 1355 151 4 0 chr6 134397988 134398213 -48017029 + MER46B DNA MER2_type 1 101 -135 252 0 0 0 chr6 134398316 134398344 -48016898 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2097 144 48 17 chr6 134398486 134398839 -48016403 - THE1B LTR MaLR 0 364 1 2268 109 0 0 chr6 134399450 134399753 -48015489 - AluY SINE Alu -8 303 1 190 300 14 14 chr6 134400290 134400360 -48014882 - L2 LINE L2 0 3313 3244 235 363 176 0 chr6 134400446 134400650 -48014592 - L2 LINE L2 -901 2413 2174 2172 135 0 0 chr6 134400777 134401089 -48014153 + AluSx SINE Alu 1 312 0 848 338 61 2 chr6 134401152 134401560 -48013682 - MLT1K LTR MaLR -90 498 67 414 0 0 0 chr6 134401797 134401843 -48013399 + (TTA)n Simple_repeat Simple_repeat 3 48 0 2154 63 0 0 chr6 134401843 134402112 -48013130 - L1PA7 LINE L1 -18 6136 5868 3182 30 0 5 chr6 134402112 134402507 -48012735 + L1PA7 LINE L1 5467 5859 -295 535 264 33 43 chr6 134402627 134402926 -48012316 - MER34B LTR ERV1 0 565 270 331 349 8 8 chr6 134404694 134404820 -48010422 - MIR3 SINE MIR -40 168 43 225 296 12 37 chr6 134404875 134404956 -48010286 - L2 LINE L2 0 3272 3194 1076 177 28 44 chr6 134404956 134405205 -48010037 - MER89 LTR ERV1 -9 550 306 496 143 0 0 chr6 134405261 134405338 -48009904 - MER89 LTR ERV1 -479 80 4 197 288 61 0 chr6 134406850 134406916 -48008326 + L3 LINE CR1 1443 1512 -65 882 235 12 1 chr6 134406994 134407331 -48007911 + MER93b LTR ERV1 1 373 0 190 250 0 0 chr6 134407756 134407796 -48007446 + L2 LINE L2 3263 3302 -11 480 283 127 56 chr6 134408472 134408923 -48006319 + L2 LINE L2 2731 3213 -100 180 77 0 0 chr6 134408965 134408991 -48006251 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 489 300 39 11 chr6 134409195 134409375 -48005867 + MER5A DNA MER1_type 3 187 -2 205 175 25 0 chr6 134411564 134411604 -48003638 + GA-rich Low_complexity Low_complexity 2 42 0 322 301 89 41 chr6 134411642 134411788 -48003454 + MIR3 SINE MIR 39 191 -17 182 405 0 0 chr6 134412139 134412218 -48003024 - MIR SINE MIR -58 150 72 607 260 140 29 chr6 134412382 134412697 -48002545 + MLT1L LTR MaLR 214 563 -52 1177 216 18 88 chr6 134413067 134413465 -48001777 - MLT1A2 LTR MaLR -4 370 1 296 240 66 0 chr6 134413503 134413624 -48001618 + LTR37A LTR ERV1 297 425 -1 326 378 44 11 chr6 134413800 134413980 -48001262 + MIR3 SINE MIR 22 207 -1 885 227 0 0 chr6 134414049 134414212 -48001030 - FAM SINE Alu -11 164 2 189 274 20 20 chr6 134414352 134414403 -48000839 + MIR SINE MIR 92 142 -120 459 239 43 53 chr6 134414788 134414976 -48000266 - MER53 DNA DNA -3 186 1 418 183 0 24 chr6 134415568 134415650 -47999592 + MER34C LTR ERV1 18 97 -488 1959 186 48 2 chr6 134415776 134416190 -47999052 + MER34C LTR ERV1 153 585 0 928 190 101 21 chr6 134416276 134416513 -47998729 + MER5C DNA MER1_type 1 256 -68 2049 121 5 102 chr6 134416651 134417090 -47998152 - MER57A LTR ERV1 0 403 8 376 276 19 67 chr6 134417093 134417198 -47998044 - L2 LINE L2 -36 3236 3137 302 305 0 32 chr6 134417307 134417402 -47997840 - L2 LINE L2 -993 2321 2230 3678 151 44 9 chr6 134417402 134418089 -47997153 - MER50 LTR ERV1 -23 711 1 542 319 127 26 chr6 134418127 134418701 -47996541 - L2 LINE L2 -1120 2194 1563 339 336 35 0 chr6 134418739 134418855 -47996387 + L2 LINE L2 3134 3253 -19 187 270 200 26 chr6 134419635 134419750 -47995492 + L2 LINE L2 730 864 -2450 1262 138 0 0 chr6 134419965 134420153 -47995089 - AluSg/x SINE Alu -3 309 122 559 313 79 51 chr6 134420167 134420522 -47994720 - L1ME4a LINE L1 -201 5920 5556 805 275 109 54 chr6 134420641 134421047 -47994195 - MLT1L LTR MaLR -22 593 150 894 246 11 0 chr6 134421047 134421234 -47994008 + MER5A DNA MER1_type 1 189 0 805 275 109 54 chr6 134421234 134421361 -47993881 - MLT1L LTR MaLR -465 150 31 687 130 0 0 chr6 134421893 134422031 -47993211 + AluSg/x SINE Alu 192 329 0 222 273 18 0 chr6 134422102 134422157 -47993085 + L2 LINE L2 1367 1422 -1892 764 203 13 0 chr6 134422383 134422541 -47992701 - MLT1D LTR MaLR 0 505 346 845 196 58 0 chr6 134422556 134422729 -47992513 - MLT1D LTR MaLR -322 183 1 579 316 133 50 chr6 134422760 134422859 -47992383 + L2 LINE L2 1612 1701 -1613 2018 113 6 75 chr6 134422859 134423194 -47992048 + AluSx SINE Alu 1 312 0 579 316 133 50 chr6 134423194 134423913 -47991329 + L2 LINE L2 1701 2498 -816 486 233 60 17 chr6 134424233 134424459 -47990783 - L1MDb LINE L1 -4779 1627 1294 545 229 18 0 chr6 134424467 134424576 -47990666 - FLAM_A SINE Alu -21 121 11 1593 225 81 26 chr6 134424629 134425246 -47989996 - L1MDb LINE L1 -4987 1422 772 436 245 0 0 chr6 134425498 134425604 -47989638 - MER3 DNA MER1_type -98 111 6 242 316 0 0 chr6 134425663 134425761 -47989481 + A-rich Low_complexity Low_complexity 1 98 0 476 328 88 0 chr6 134427078 134427249 -47987993 + MIR SINE MIR 66 251 -11 219 221 176 0 chr6 134428016 134428084 -47987158 - MIR SINE MIR -111 151 72 2369 95 3 0 chr6 134429720 134430025 -47985217 - AluSx SINE Alu -6 306 1 4454 100 10 18 chr6 134430719 134431390 -47983852 - L1PA13 LINE L1 -1 6162 5497 268 271 68 0 chr6 134431689 134431748 -47983494 + L2 LINE L2 3247 3309 -4 306 67 0 0 chr6 134433808 134433853 -47981389 + (CA)n Simple_repeat Simple_repeat 2 46 0 679 247 179 45 chr6 134435271 134435583 -47979659 + L2 LINE L2 2948 3301 -12 360 295 0 29 chr6 134436524 134436629 -47978613 + L2 LINE L2 3171 3272 0 343 288 0 76 chr6 134437932 134438050 -47977192 + MER5B DNA MER1_type 66 174 -4 180 322 0 34 chr6 134438052 134438111 -47977131 + MIR3 SINE MIR 151 207 -1 434 261 152 6 chr6 134438948 134439113 -47976129 - L3 LINE CR1 -2 1575 1387 294 256 13 0 chr6 134439938 134440016 -47975226 - MIR SINE MIR 0 262 184 381 256 80 10 chr6 134443739 134443938 -47971304 + L1MC5 LINE L1 7714 7926 -35 21 0 0 0 chr6 134445546 134445567 -47969675 + AT_rich Low_complexity Low_complexity 1 21 0 470 276 64 6 chr6 134446538 134446694 -47968548 + MIR SINE MIR 40 204 -58 2162 73 3 21 chr6 134447023 134447334 -47967908 + AluY SINE Alu 1 306 0 222 339 32 24 chr6 134447923 134448047 -47967195 - MIR SINE MIR -98 164 40 207 0 0 0 chr6 134448323 134448346 -47966896 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1856 170 0 0 chr6 134448577 134448848 -47966394 - AluJb SINE Alu -36 276 6 316 322 11 11 chr6 134449067 134449154 -47966088 + MIR SINE MIR 17 103 -105 437 251 102 53 chr6 134449264 134449533 -47965709 + LTR33 LTR ERVL 24 357 -164 766 243 81 0 chr6 134449552 134449725 -47965517 + MER5A DNA MER1_type 3 189 0 438 270 40 8 chr6 134449734 134449860 -47965382 - MER5A DNA MER1_type -57 132 3 324 107 54 0 chr6 134450148 134450204 -47965038 - MLT1B LTR MaLR -10 380 322 * 688 203 47 0 chr6 134450202 134450350 -47964892 - MLT1B LTR MaLR -235 155 1 1312 183 92 84 chr6 134450372 134450765 -47964477 + MSTD LTR MaLR 1 396 0 656 174 96 30 chr6 134450858 134451025 -47964217 - MER5B DNA MER1_type 0 178 1 204 321 12 49 chr6 134451757 134451838 -47963404 + MIR3 SINE MIR 128 205 -3 33 25 0 0 chr6 134451997 134452037 -47963205 + AT_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr6 134453622 134453659 -47961583 + AT_rich Low_complexity Low_complexity 1 37 0 416 248 131 0 chr6 134453801 134453946 -47961296 + L2 LINE L2 3150 3313 0 389 264 44 64 chr6 134455908 134456132 -47959110 - L1ME4a LINE L1 -237 5884 5666 1895 175 10 3 chr6 134456132 134456440 -47958802 - AluSx SINE Alu -2 310 1 389 264 44 64 chr6 134456440 134456511 -47958731 - L1ME4a LINE L1 -455 5666 5595 316 292 0 21 chr6 134456513 134456609 -47958633 + L1MC4 LINE L1 6614 6707 -1335 756 132 0 0 chr6 134457265 134457386 -47957856 + L1MB3 LINE L1 6049 6169 -14 676 229 34 6 chr6 134458149 134458324 -47956918 - MIR SINE MIR -6 256 77 322 320 10 0 chr6 134460018 134460121 -47955121 + MIR SINE MIR 159 262 0 374 305 159 0 chr6 134460336 134460487 -47954755 + MIR SINE MIR 22 196 -66 1936 135 60 0 chr6 134460544 134460826 -47954416 + AluSx SINE Alu 1 299 -13 1161 62 0 0 chr6 134461824 134461969 -47953273 - AluY SINE Alu -15 296 152 1490 174 67 3 chr6 134462378 134462677 -47952565 - MER39 LTR ERV1 -389 318 1 1205 131 0 0 chr6 134462874 134463042 -47952200 + AluSg/x SINE Alu 137 304 -8 180 0 0 0 chr6 134463666 134463686 -47951556 + (A)n Simple_repeat Simple_repeat 1 20 0 2638 99 91 0 chr6 134465112 134465528 -47949714 + L1PA13 LINE L1 5708 6161 -2 302 169 65 0 chr6 134465900 134465977 -47949265 + MSTC LTR MaLR 346 427 -1 206 73 0 49 chr6 134467436 134467477 -47947765 + (TAA)n Simple_repeat Simple_repeat 2 40 0 350 257 7 0 chr6 134467479 134467580 -47947662 - MIR SINE MIR -31 177 74 187 286 13 39 chr6 134467627 134467704 -47947538 - L2 LINE L2 -8 3305 3231 181 344 21 32 chr6 134467701 134467794 -47947448 - MIR3 SINE MIR -114 94 3 * 280 148 185 12 chr6 134467864 134467945 -47947297 - MER103 DNA DNA -69 97 3 23 0 0 0 chr6 134468491 134468514 -47946728 + AT_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chr6 134469649 134469675 -47945567 + (A)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr6 134469972 134469993 -47945249 + (A)n Simple_repeat Simple_repeat 1 21 0 28 0 0 0 chr6 134470559 134470587 -47944655 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chr6 134470692 134470727 -47944515 + (CA)n Simple_repeat Simple_repeat 2 36 0 271 386 66 5 chr6 134471010 134471207 -47944035 - L2 LINE L2 -556 2758 2550 255 316 45 38 chr6 134471342 134471475 -47943767 - MIR3 SINE MIR -1 207 74 1312 168 89 37 chr6 134471502 134471882 -47943360 + MLT1C LTR MaLR 6 405 -62 189 74 0 0 chr6 134471883 134471910 -47943332 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1576 178 0 23 chr6 134471951 134472112 -47943130 - AluJb SINE Alu -19 293 130 180 0 0 0 chr6 134472112 134472132 -47943110 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2042 136 7 0 chr6 134472132 134472411 -47942831 - AluSx SINE Alu -31 281 1 1576 178 0 23 chr6 134472411 134472512 -47942730 - AluJb SINE Alu -180 132 36 1548 105 0 0 chr6 134472542 134472742 -47942500 - AluSc SINE Alu -11 298 99 187 264 42 14 chr6 134472844 134472916 -47942326 - MIR SINE MIR -31 231 158 206 181 14 69 chr6 134473518 134473590 -47941652 + T-rich Low_complexity Low_complexity 2 69 0 30 27 0 0 chr6 134474735 134474772 -47940470 + AT_rich Low_complexity Low_complexity 1 37 0 2143 138 0 0 chr6 134474780 134475085 -47940157 - AluSx SINE Alu -7 305 1 8689 226 37 8 chr6 134475286 134477798 -47937444 + L1MC1 LINE L1 2805 5390 -756 645 250 0 76 chr6 134477799 134477983 -47937259 - MER45A DNA AcHobo 0 178 9 3665 158 22 24 chr6 134477983 134478707 -47936535 + L1MC1 LINE L1 5395 6117 -216 1039 60 80 0 chr6 134478707 134478858 -47936384 - L1P LINE L1 -1746 4400 4238 193 293 61 50 chr6 134478858 134478957 -47936285 + L2 LINE L2 3191 3290 -23 1277 149 5 18 chr6 134479017 134479238 -47936004 + L1MC1 LINE L1 6108 6325 -8 2137 109 0 0 chr6 134479273 134479549 -47935693 + AluSg SINE Alu 27 302 -8 8606 48 1 0 chr6 134479960 134481816 -47933426 + L1PA5 LINE L1 4281 6151 -3 670 149 71 12 chr6 134483497 134483665 -47931577 + MER53 DNA DNA 2 179 -10 21 57 0 0 chr6 134483687 134483722 -47931520 + AT_rich Low_complexity Low_complexity 1 35 0 2529 54 3 0 chr6 134484989 134485287 -47929955 + AluY SINE Alu 1 299 -12 329 214 65 179 chr6 134485425 134485626 -47929616 + MIR3 SINE MIR 30 207 -1 298 270 230 7 chr6 134488267 134488419 -47926823 + MIR SINE MIR 64 249 -13 370 374 66 0 chr6 134490896 134491062 -47924180 + MIR SINE MIR 46 222 -40 275 320 20 10 chr6 134491082 134491182 -47924060 - L3 LINE CR1 -50 1527 1427 194 282 12 24 chr6 134491197 134491282 -47923960 + L3 LINE CR1 791 874 -703 212 335 112 39 chr6 134491445 134491678 -47923564 - L3 LINE CR1 -122 1455 1206 22 35 0 0 chr6 134491861 134491890 -47923352 + AT_rich Low_complexity Low_complexity 1 29 0 1623 248 150 53 chr6 134493103 134493955 -47921287 - L2 LINE L2 -14 3299 2319 234 91 0 0 chr6 134494003 134494036 -47921206 + (CA)n Simple_repeat Simple_repeat 2 34 0 643 95 21 0 chr6 134494125 134494220 -47921022 - THE1A-int LTR MaLR -1481 99 3 1245 131 23 0 chr6 134494222 134494436 -47920806 - THE1A LTR MaLR 0 355 137 434 275 49 14 chr6 134494536 134494678 -47920564 - L2 LINE L2 -849 2465 2319 213 121 0 0 chr6 134494726 134494759 -47920483 + (CA)n Simple_repeat Simple_repeat 2 34 0 485 158 32 11 chr6 134494848 134494943 -47920299 - THE1A-int LTR MaLR -1481 99 3 2133 104 43 14 chr6 134494945 134495290 -47919952 - THE1A LTR MaLR 0 355 1 242 307 150 75 chr6 134495302 134495582 -47919660 + L2 LINE L2 2968 3268 -4 2365 121 8 8 chr6 134496051 134496406 -47918836 + THE1A LTR MaLR 1 355 0 291 356 119 23 chr6 134496407 134496668 -47918574 - L2 LINE L2 -343 2971 2686 1795 157 21 0 chr6 134496825 134497111 -47918131 + AluJo SINE Alu 5 296 -16 2448 68 0 0 chr6 134497412 134497708 -47917534 + AluY SINE Alu 1 296 -15 947 184 120 21 chr6 134498542 134498776 -47916466 + MSTA LTR MaLR 1 257 -171 1468 168 16 18 chr6 134499414 134499728 -47915514 + L1ME LINE L1 5283 5576 -590 326 320 33 8 chr6 134499763 134499885 -47915357 + MER91C DNA MER1_type 15 139 -1 439 331 39 0 chr6 134500488 134500666 -47914576 - MIR SINE MIR -31 231 47 541 208 83 60 chr6 134501119 134501287 -47913955 + MER5B DNA MER1_type 2 173 -5 744 212 127 5 chr6 134502663 134502875 -47912367 + MER33 DNA MER1_type 1 238 -86 207 0 0 0 chr6 134503027 134503050 -47912192 + (GA)n Simple_repeat Simple_repeat 2 24 0 261 130 0 43 chr6 134503232 134503301 -47911941 + (TA)n Simple_repeat Simple_repeat 1 66 0 623 224 148 45 chr6 134503341 134503564 -47911678 - LTR16A1 LTR ERVL 0 457 212 979 325 88 22 chr6 134503576 134504021 -47911221 - L2 LINE L2 -60 3253 2764 302 372 88 0 chr6 134504550 134504846 -47910396 + L2 LINE L2 571 892 -2422 230 289 157 0 chr6 134504853 134504936 -47910306 + MLT1K LTR MaLR 322 417 -171 351 302 87 47 chr6 134505568 134505752 -47909490 + L2 LINE L2 2187 2387 -927 2790 108 34 7 chr6 134505752 134506169 -47909073 - MSTA LTR MaLR 0 428 1 351 302 87 47 chr6 134506169 134506259 -47908983 + L2 LINE L2 2387 2472 -842 245 156 0 22 chr6 134507221 134507266 -47907976 - L2 LINE L2 -5 3308 3265 425 294 20 0 chr6 134509835 134509981 -47905261 - L1MC4a LINE L1 -1971 5837 5689 243 0 0 0 chr6 134510006 134510033 -47905209 + (CA)n Simple_repeat Simple_repeat 2 28 0 992 189 34 118 chr6 134510418 134510714 -47904528 + MLT1A1 LTR MaLR 1 271 -94 241 342 13 0 chr6 134511373 134511452 -47903790 - L2 LINE L2 -8 3305 3226 2318 163 23 39 chr6 134511538 134511973 -47903269 - MSTC LTR MaLR 0 428 1 424 261 101 50 chr6 134512081 134512280 -47902962 - MER20B DNA MER1_type -569 214 6 312 269 188 25 chr6 134512343 134512503 -47902739 + MIR SINE MIR 13 198 -64 246 106 0 234 chr6 134512949 134513043 -47902199 - MIR SINE MIR -68 194 123 461 303 42 7 chr6 134513309 134513451 -47901791 - MIR SINE MIR -93 169 23 1855 48 0 4 chr6 134513890 134514121 -47901121 - L1PA7 LINE L1 0 6154 5925 2232 104 3 3 chr6 134515132 134515431 -47899811 + AluSq SINE Alu 1 299 -14 329 242 161 8 chr6 134515433 134515557 -47899685 - MIR SINE MIR -71 191 49 22 0 0 0 chr6 134516127 134516149 -47899093 + AT_rich Low_complexity Low_complexity 1 22 0 279 323 11 71 chr6 134518982 134519179 -47896063 - MIR SINE MIR -46 216 33 403 350 67 0 chr6 134519213 134519436 -47895806 - MIR SINE MIR -5 257 20 21 0 0 0 chr6 134519508 134519529 -47895713 + AT_rich Low_complexity Low_complexity 1 21 0 204 194 97 32 chr6 134520940 134521002 -47894240 - MIR SINE MIR -74 188 123 537 335 42 0 chr6 134521471 134521802 -47893440 + L1M4 LINE L1 3543 3887 -2259 470 318 82 54 chr6 134521813 134522237 -47893005 + L1M4 LINE L1 3915 4350 -1796 2136 132 0 0 chr6 134522281 134522570 -47892672 + AluSx SINE Alu 1 289 -23 23 54 0 0 chr6 134522570 134522607 -47892635 + AT_rich Low_complexity Low_complexity 1 37 0 28 0 0 0 chr6 134522748 134522776 -47892466 + AT_rich Low_complexity Low_complexity 1 28 0 14742 169 33 21 chr6 134523694 134527847 -47887395 - L1MA4 LINE L1 -6 7713 3505 24 67 0 0 chr6 134527858 134527903 -47887339 + AT_rich Low_complexity Low_complexity 1 45 0 990 188 22 45 chr6 134532210 134532433 -47882809 + AluJb SINE Alu 87 304 -8 624 266 76 5 chr6 134532558 134532742 -47882500 - MIR SINE MIR 0 262 66 526 245 73 20 chr6 134532789 134532940 -47882302 - MIR3 SINE MIR -14 194 36 578 273 57 159 chr6 134534011 134534191 -47881051 - L3 LINE CR1 -11 1566 1369 2107 28 0 0 chr6 134534191 134534439 -47880803 + L1PA4 LINE L1 5901 6148 -7 578 273 57 159 chr6 134534439 134534929 -47880313 - L3 LINE CR1 -208 1369 965 381 278 60 0 chr6 134535880 134536013 -47879229 - Charlie8 DNA MER1_type -2152 265 125 416 331 8 0 chr6 134536302 134536423 -47878819 + L2 LINE L2 3188 3309 -4 23 0 0 0 chr6 134536471 134536494 -47878748 + AT_rich Low_complexity Low_complexity 1 23 0 355 323 147 31 chr6 134536614 134537029 -47878213 + HAL1 LINE L1 2 464 -2043 341 269 36 16 chr6 134537319 134537535 -47877707 - MLT1G1 LTR MaLR -349 246 12 627 274 103 46 chr6 134537543 134537959 -47877283 + HAL1 LINE L1 524 963 -1544 33 0 0 0 chr6 134537975 134538008 -47877234 + AT_rich Low_complexity Low_complexity 1 33 0 684 252 26 0 chr6 134538750 134538905 -47876337 - MIR SINE MIR -3 259 101 3583 139 52 14 chr6 134539067 134539676 -47875566 - MER39B LTR ERV1 0 626 9 2696 76 25 0 chr6 134539676 134540031 -47875211 - THE1B LTR MaLR 0 364 1 490 316 16 21 chr6 134540255 134540442 -47874800 - MIR SINE MIR -29 233 48 1948 136 3 3 chr6 134541673 134541959 -47873283 - AluSx SINE Alu -26 286 1 589 275 22 14 chr6 134542002 134542224 -47873018 - L1ME LINE L1 -356 5765 5542 498 252 15 20 chr6 134544027 134544172 -47871070 - MIR SINE MIR -69 139 16 23 0 0 0 chr6 134545910 134545933 -47869309 + AT_rich Low_complexity Low_complexity 1 23 0 246 210 485 0 chr6 134545986 134546153 -47869089 - LTR50 LTR ERVL -325 470 223 316 194 32 0 chr6 134546225 134546287 -47868955 - LTR50 LTR ERVL -724 71 8 765 262 23 0 chr6 134546496 134546668 -47868574 - MER5B DNA MER1_type 0 178 3 197 337 35 23 chr6 134547188 134547274 -47867968 - L2 LINE L2 0 3272 3186 204 210 258 0 chr6 134547384 134547446 -47867796 - L2 LINE L2 -44 3228 3151 585 216 32 112 chr6 134547703 134547981 -47867261 + MER112 DNA MER1_type 1 256 0 391 214 169 0 chr6 134547990 134548079 -47867163 + MER5A DNA MER1_type 9 112 -77 431 240 40 0 chr6 134548108 134548208 -47867034 - MER5A DNA MER1_type -77 112 9 484 262 37 0 chr6 134548269 134548376 -47866866 + L2 LINE L2 3145 3255 -17 182 385 96 0 chr6 134548819 134548923 -47866319 + L2 LINE L2 3102 3215 -57 258 313 57 83 chr6 134550002 134550194 -47865048 - MIR SINE MIR -50 212 26 1973 230 96 15 chr6 134552404 134553022 -47862220 + L1MC4 LINE L1 7375 8042 0 393 293 204 0 chr6 134553340 134553487 -47861755 + MIR SINE MIR 42 218 -44 322 135 0 54 chr6 134554994 134555068 -47860174 - Alu SINE Alu 0 300 231 761 273 36 12 chr6 134555147 134555396 -47859846 - MIR SINE MIR -4 258 4 2272 102 7 3 chr6 134555506 134555801 -47859441 + AluSx SINE Alu 1 296 -16 232 278 0 0 chr6 134555925 134555979 -47859263 - L2 LINE L2 -12 3301 3248 220 323 173 16 chr6 134556014 134556141 -47859101 - L2 LINE L2 -4 3268 3122 22 0 0 0 chr6 134556872 134556894 -47858348 + AT_rich Low_complexity Low_complexity 1 22 0 2377 213 38 59 chr6 134557967 134558573 -47856669 + MLT1E LTR MaLR 1 593 0 445 305 122 0 chr6 134559006 134559170 -47856072 + MIR SINE MIR 79 262 0 592 223 11 55 chr6 134560381 134560562 -47854680 + MIR SINE MIR 23 204 -58 21 57 0 0 chr6 134560620 134560655 -47854587 + AT_rich Low_complexity Low_complexity 1 35 0 3250 134 26 28 chr6 134560771 134561299 -47853943 + MER1A DNA MER1_type 1 527 0 275 197 0 16 chr6 134561434 134561495 -47853747 + MLT1K LTR MaLR 522 581 -7 1617 142 0 0 chr6 134562175 134562421 -47852821 - AluSg SINE Alu -1 309 64 207 302 0 16 chr6 134562951 134563014 -47852228 + L2 LINE L2 3211 3272 0 222 291 23 47 chr6 134565202 134565288 -47849954 - L2 LINE L2 -2 3270 3187 247 326 78 76 chr6 134565877 134566397 -47848845 + L2 LINE L2 2748 3270 -2 216 0 0 0 chr6 134567834 134567858 -47847384 + (TG)n Simple_repeat Simple_repeat 2 25 0 340 245 10 0 chr6 134568053 134568151 -47847091 - L1M4 LINE L1 -1784 4362 4264 462 36 0 0 chr6 134568318 134568374 -47846868 + (TA)n Simple_repeat Simple_repeat 2 57 0 2092 121 32 51 chr6 134569356 134569727 -47845515 + THE1B LTR MaLR 1 364 0 2132 149 17 46 chr6 134570337 134570730 -47844512 - MER57A LTR ERV1 0 403 21 1975 113 24 0 chr6 134570730 134571022 -47844220 - AluSx SINE Alu -13 299 1 2132 149 17 46 chr6 134571022 134571043 -47844199 - MER57A LTR ERV1 -382 21 1 248 299 108 100 chr6 134571620 134571991 -47843251 - L2 LINE L2 -5 3267 2894 608 310 8 59 chr6 134572345 134572543 -47842699 + MIR SINE MIR 8 192 -70 2181 113 0 0 chr6 134572543 134572835 -47842407 + AluSg SINE Alu 5 296 -14 608 310 8 59 chr6 134572835 134572891 -47842351 + MIR SINE MIR 192 249 -13 509 268 134 0 chr6 134573450 134573607 -47841635 - MER5B DNA MER1_type 0 178 1 497 364 105 21 chr6 134575202 134575620 -47839622 - L2 LINE L2 -456 2858 2406 191 0 103 0 chr6 134575931 134575960 -47839282 + T-rich Low_complexity Low_complexity 3 34 0 850 203 199 0 chr6 134575975 134576231 -47839011 - L1MC1 LINE L1 0 6333 6027 180 333 93 0 chr6 134576635 134576689 -47838553 - L2 LINE L2 -80 3192 3134 2753 149 32 6 chr6 134576704 134577199 -47838043 - L1MA9 LINE L1 0 6312 5805 4297 189 66 12 chr6 134577202 134578451 -47836791 + L1MA9 LINE L1 4951 6274 -38 959 206 0 0 chr6 134578842 134579056 -47836186 - L1MA9 LINE L1 -757 5389 5176 325 211 28 42 chr6 134579523 134579665 -47835577 + (TTATA)n Simple_repeat Simple_repeat 3 142 0 5362 300 46 23 chr6 134579723 134581562 -47833680 - HERVL LTR ERVL -1945 3709 1705 1277 189 87 40 chr6 134581562 134581860 -47833382 + AluJo SINE Alu 1 311 0 5362 300 46 23 chr6 134581860 134582207 -47833035 - HERVL LTR ERVL -3949 1705 1368 958 135 6 18 chr6 134582211 134582374 -47832868 - L1PA16 LINE L1 0 6166 6006 510 227 8 15 chr6 134582598 134582730 -47832512 - MER63 DNA MER1_type 0 1062 932 291 304 20 0 chr6 134582815 134582917 -47832325 + L1MEd LINE L1 457 560 -5559 310 318 53 20 chr6 134582926 134583077 -47832165 + MIR SINE MIR 107 262 0 427 174 0 0 chr6 134584325 134584394 -47830848 + AluS SINE Alu 3 71 -242 322 235 102 48 chr6 134585382 134585569 -47829673 - MLT1K LTR MaLR -14 574 378 332 249 27 32 chr6 134585957 134586138 -47829104 + MLT1J2 LTR MaLR 63 237 -172 284 172 97 43 chr6 134586145 134586238 -47829004 + MLT1J1 LTR MaLR 344 441 -5 2346 98 124 18 chr6 134586262 134586649 -47828593 - MSTA LTR MaLR 0 428 1 28 0 0 0 chr6 134586963 134586991 -47828251 + AT_rich Low_complexity Low_complexity 1 28 0 2673 90 16 0 chr6 134587825 134588192 -47827050 + THE1C LTR MaLR 1 373 -2 1794 160 33 28 chr6 134588989 134589352 -47825890 + MLT1A1 LTR MaLR 1 365 0 220 350 0 0 chr6 134589449 134589509 -47825733 - L2 LINE L2 -8 3305 3246 184 261 138 0 chr6 134589891 134589956 -47825286 - MIR SINE MIR -92 116 43 * 872 196 46 0 chr6 134589953 134590126 -47825116 + MER5A DNA MER1_type 9 189 0 636 265 83 10 chr6 134591010 134591245 -47823997 + MIR SINE MIR 11 261 -1 206 62 31 0 chr6 134592472 134592504 -47822738 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 1538 256 103 61 chr6 134593183 134593927 -47821315 + L1ME3A LINE L1 4637 5349 -821 445 153 0 72 chr6 134593927 134594038 -47821204 + L1MB8 LINE L1 6071 6173 -5 1538 256 103 61 chr6 134594038 134594724 -47820518 + L1ME3A LINE L1 5349 6137 -33 1886 98 102 18 chr6 134594734 134595008 -47820234 - AluSg SINE Alu -13 297 1 21 0 0 0 chr6 134595009 134595030 -47820212 + AT_rich Low_complexity Low_complexity 1 21 0 1074 242 50 44 chr6 134595288 134595652 -47819590 + MLT1A2 LTR MaLR 1 366 -8 261 119 0 0 chr6 134596103 134596145 -47819097 + 5S rRNA rRNA 1 42 -79 821 310 14 5 chr6 134596223 134596439 -47818803 - MIR SINE MIR -13 249 32 183 231 26 0 chr6 134598080 134598119 -47817123 + L3 LINE CR1 29 68 -1509 362 289 228 7 chr6 134598236 134598385 -47816857 + MER5A DNA MER1_type 8 189 0 1547 166 24 35 chr6 134599765 134600054 -47815188 + AluJb SINE Alu 1 286 -26 180 0 0 0 chr6 134600390 134600410 -47814832 + (A)n Simple_repeat Simple_repeat 1 20 0 457 245 174 13 chr6 134600669 134600824 -47814418 - MER5A DNA MER1_type -6 183 4 492 314 91 12 chr6 134602183 134602425 -47812817 + MIR SINE MIR 1 261 -1 877 150 0 0 chr6 134602767 134602900 -47812342 + FLAM_C SINE Alu 1 133 0 1703 103 14 0 chr6 134603090 134603371 -47811871 - L1P LINE L1 -2718 3428 3144 5130 42 10 0 chr6 134603371 134603989 -47811253 + L1PA7 LINE L1 5526 6154 0 264 231 11 33 chr6 134606040 134606131 -47809111 + L1MC4a LINE L1 6086 6174 -1634 21 0 0 0 chr6 134606381 134606402 -47808840 + AT_rich Low_complexity Low_complexity 1 21 0 1822 182 0 0 chr6 134606686 134606983 -47808259 + AluJb SINE Alu 1 297 -15 297 267 106 138 chr6 134607851 134608138 -47807104 + L2 LINE L2 2760 3021 -251 2735 175 68 9 chr6 134608138 134608665 -47806577 - MER74A LTR ERVL 0 558 1 297 267 106 138 chr6 134608665 134608834 -47806408 + L2 LINE L2 3021 3194 -78 21 0 0 0 chr6 134609431 134609452 -47805790 + AT_rich Low_complexity Low_complexity 1 21 0 215 320 86 35 chr6 134610538 134610735 -47804507 + L2 LINE L2 2817 3023 -249 211 250 175 50 chr6 134610991 134611111 -47804131 + L2 LINE L2 3179 3313 0 1592 194 14 0 chr6 134611239 134611522 -47803720 - AluJo SINE Alu -17 295 9 2289 119 0 3 chr6 134611601 134611904 -47803338 - AluSx SINE Alu -10 302 1 3613 253 15 13 chr6 134612846 134613789 -47801453 - HERVL40 LTR ERVL -1578 3952 3008 1098 222 76 28 chr6 134613829 134614117 -47801125 - HERVL40 LTR ERVL -2517 3013 2712 2606 155 123 15 chr6 134614117 134614826 -47800416 - LTR1B LTR ERV1 0 826 1 665 224 15 41 chr6 134614826 134615022 -47800220 - HERVL40 LTR ERVL -2815 2715 2525 4371 252 73 52 chr6 134615023 134616601 -47798641 - HERVL40 LTR ERVL -3918 1612 1 1563 210 60 94 chr6 134616605 134616748 -47798494 - LTR40a LTR ERVL -2 517 371 2357 100 0 7 chr6 134616748 134617047 -47798195 - AluSx SINE Alu -15 297 1 1563 210 60 94 chr6 134617047 134617436 -47797806 - LTR40a LTR ERVL -148 371 3 7810 19 0 0 chr6 134617447 134618895 -47796347 + L1PA3 LINE L1 4705 6152 -3 23 0 0 0 chr6 134622127 134622150 -47793092 + AT_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chr6 134623485 134623511 -47791731 + (T)n Simple_repeat Simple_repeat 1 26 0 187 292 62 52 chr6 134623511 134623607 -47791635 - MIR3 SINE MIR -109 99 3 569 300 92 22 chr6 134624564 134624791 -47790451 - MIR SINE MIR -10 252 10 184 289 0 19 chr6 134626642 134626694 -47788548 - L2 LINE L2 -516 2798 2748 432 331 29 7 chr6 134627668 134627807 -47787435 - MIR SINE MIR -111 151 10 755 314 36 84 chr6 134629172 134629837 -47785405 - L2 LINE L2 -75 3197 2557 407 322 89 49 chr6 134629862 134630368 -47784874 + L2 LINE L2 2423 2948 -366 302 244 23 82 chr6 134632491 134632682 -47782560 + L1ME3A LINE L1 5934 6120 -50 28 0 0 0 chr6 134634483 134634511 -47780731 + AT_rich Low_complexity Low_complexity 1 28 0 2517 45 0 22 chr6 134634845 134635157 -47780085 + AluY SINE Alu 1 305 -6 2450 80 0 10 chr6 134635266 134635578 -47779664 + AluSc SINE Alu 1 309 0 191 307 171 23 chr6 134635681 134635769 -47779473 + MIR SINE MIR 51 151 -57 697 199 60 18 chr6 134637248 134637414 -47777828 + MLT1B LTR MaLR 1 173 -217 623 189 0 24 chr6 134637422 134637549 -47777693 + FRAM SINE Alu 44 167 -9 731 170 164 0 chr6 134637570 134637741 -47777501 + MLT1B LTR MaLR 192 390 0 2219 117 3 0 chr6 134638275 134638583 -47776659 - AluSg SINE Alu -1 309 1 267 262 0 0 chr6 134639110 134639171 -47776071 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 2027 106 55 17 chr6 134639606 134639899 -47775343 + AluSg SINE Alu 3 306 -4 284 213 0 0 chr6 134642161 134642222 -47773020 - AluJ/monomer SINE Alu -1 301 241 2203 89 11 0 chr6 134642771 134643082 -47772160 + AluSq SINE Alu 1 314 0 808 216 96 0 chr6 134643265 134643473 -47771769 + L1MB7 LINE L1 5938 6165 -19 303 172 0 2 chr6 134643801 134643878 -47771364 - L1MA7 LINE L1 -4 6287 6221 329 370 42 27 chr6 134644228 134644490 -47770752 - L2 LINE L2 -181 3091 2826 2240 236 128 36 chr6 134645520 134646433 -47768809 + L1MC4 LINE L1 6889 7913 -129 2083 96 35 11 chr6 134646433 134646715 -47768527 + AluY SINE Alu 1 289 -22 2240 236 128 36 chr6 134646715 134646854 -47768388 + L1MC4 LINE L1 7913 8038 -4 362 286 179 7 chr6 134647032 134647172 -47768070 + MIR3 SINE MIR 1 164 -44 2086 128 0 0 chr6 134647402 134647721 -47767521 + AluSg SINE Alu 1 319 0 21 36 0 0 chr6 134647725 134647753 -47767489 + AT_rich Low_complexity Low_complexity 1 28 0 908 194 43 28 chr6 134648133 134648344 -47766898 - MER58C DNA MER1_type -1 214 1 1844 192 0 13 chr6 134648390 134648697 -47766545 + AluJb SINE Alu 1 303 -9 1080 239 139 46 chr6 134649247 134649745 -47765497 + L1MC4 LINE L1 7408 7951 -91 28 29 0 0 chr6 134652841 134652876 -47762366 + AT_rich Low_complexity Low_complexity 1 35 0 716 147 18 0 chr6 134653088 134653197 -47762045 - Tigger2a DNA MER2_type 0 444 334 1182 136 0 45 chr6 134653216 134653414 -47761828 - Tigger2a DNA MER2_type -245 189 1 28 29 0 0 chr6 134655170 134655205 -47760037 + AT_rich Low_complexity Low_complexity 1 35 0 502 264 129 36 chr6 134656413 134656606 -47758636 - MIR SINE MIR 0 262 52 387 327 50 15 chr6 134657918 134658117 -47757125 + L1MC4a LINE L1 4935 5140 -1006 4016 257 85 78 chr6 134658181 134658567 -47756675 + L1MC4a LINE L1 5258 5640 -2168 1401 124 60 0 chr6 134658567 134658784 -47756458 + MER30 DNA MER1_type 1 230 0 4016 257 85 78 chr6 134658784 134660832 -47754410 + L1MC4a LINE L1 5640 7710 -98 395 235 81 66 chr6 134660833 134660969 -47754273 + L1MC4 LINE L1 7804 7941 -101 246 250 67 58 chr6 134660970 134661074 -47754168 + L1MD3 LINE L1 7883 7987 -8 631 285 77 16 chr6 134661326 134661567 -47753675 + MIR SINE MIR 6 256 -6 201 94 0 0 chr6 134662969 134663001 -47752241 + (A)n Simple_repeat Simple_repeat 1 32 0 1700 181 0 4 chr6 134664142 134664423 -47750819 + AluJb SINE Alu 1 280 -32 21 71 0 0 chr6 134664791 134664833 -47750409 + AT_rich Low_complexity Low_complexity 1 42 0 202 118 29 0 chr6 134665342 134665376 -47749866 + A-rich Low_complexity Low_complexity 2 36 0 3629 78 20 49 chr6 134666795 134667349 -47747893 - L1PA11 LINE L1 0 6174 5637 314 279 235 20 chr6 134667410 134667661 -47747581 + L1ME4a LINE L1 5691 5995 -126 294 352 127 44 chr6 134668279 134668640 -47746602 + L3 LINE CR1 1 391 -1186 308 340 38 9 chr6 134669197 134669357 -47745885 + MIR SINE MIR 13 173 -67 530 227 9 0 chr6 134670345 134670455 -47744787 + AluJ SINE Alu 1 111 -201 844 190 22 27 chr6 134670505 134670689 -47744553 + AluJ SINE Alu 109 291 -21 2280 102 0 3 chr6 134670689 134670984 -47744258 - AluSg SINE Alu -14 296 3 365 275 32 79 chr6 134672437 134672536 -47742706 + L2 LINE L2 2687 2774 -540 2167 85 41 0 chr6 134672536 134672829 -47742413 + AluSc SINE Alu 1 305 -4 365 275 32 79 chr6 134672829 134672918 -47742324 + L2 LINE L2 2774 2866 -448 447 324 151 53 chr6 134673487 134674907 -47740335 + L2 LINE L2 1656 3271 -1 188 380 65 0 chr6 134675004 134675096 -47740146 + L2 LINE L2 3125 3222 -50 764 211 53 0 chr6 134676159 134676330 -47738912 - AluJo SINE Alu -19 293 114 525 344 96 0 chr6 134676460 134676678 -47738564 + MIR SINE MIR 12 250 -12 225 0 0 0 chr6 134677418 134677443 -47737799 + (T)n Simple_repeat Simple_repeat 1 25 0 778 204 6 23 chr6 134678769 134678945 -47736297 - MER5B DNA MER1_type -4 174 2 730 220 32 16 chr6 134678950 134679136 -47736106 + MER5A DNA MER1_type 1 189 0 2192 89 0 4 chr6 134679342 134679646 -47735596 - AluSc SINE Alu 0 303 1 181 267 0 50 chr6 134680327 134680387 -47734855 - L2 LINE L2 -212 3060 3004 1306 207 117 6 chr6 134680832 134681156 -47734086 - L2 LINE L2 -633 2681 2322 462 51 17 0 chr6 134682016 134682075 -47733167 + 5S rRNA rRNA 1 60 -61 2351 81 0 7 chr6 134682184 134682479 -47732763 - AluSg SINE Alu -17 293 1 286 302 58 0 chr6 134683009 134683095 -47732147 + L2 LINE L2 3223 3313 0 23 0 0 0 chr6 134683650 134683673 -47731569 + AT_rich Low_complexity Low_complexity 1 23 0 2807 140 17 0 chr6 134684588 134685052 -47730190 + L1MC1 LINE L1 5857 6328 -5 180 111 0 0 chr6 134685479 134685506 -47729736 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1196 143 17 0 chr6 134685527 134685702 -47729540 - AluJb SINE Alu -14 298 121 2235 100 7 0 chr6 134686075 134686366 -47728876 + AluSc SINE Alu 1 293 -16 663 292 42 13 chr6 134686495 134686731 -47728511 - MIR SINE MIR -10 252 10 478 327 20 36 chr6 134688008 134688209 -47727033 - MIR3 SINE MIR -6 202 1 2221 112 0 10 chr6 134688572 134688885 -47726357 + AluSx SINE Alu 1 310 -2 1796 157 7 11 chr6 134689061 134689348 -47725894 + AluJb SINE Alu 2 287 -25 1673 158 32 48 chr6 134689804 134689940 -47725302 + AluJb SINE Alu 1 138 -174 2398 68 3 13 chr6 134689940 134690248 -47724994 + AluSc SINE Alu 1 305 -4 1673 158 32 48 chr6 134690248 134690427 -47724815 + AluJb SINE Alu 138 311 -1 606 239 80 4 chr6 134691104 134691342 -47723900 - L1M4 LINE L1 -3328 2818 2563 261 204 43 32 chr6 134691367 134691460 -47723782 - L1MC5 LINE L1 -37 7924 7831 5394 173 26 8 chr6 134691942 134693933 -47721309 + L1PA16 LINE L1 4126 6153 -13 2343 108 0 0 chr6 134694319 134694624 -47720618 + AluSx SINE Alu 1 305 -7 236 302 116 0 chr6 134694663 134694792 -47720450 + L1MC5 LINE L1 7744 7887 -74 28 48 0 0 chr6 134695852 134695894 -47719348 + AT_rich Low_complexity Low_complexity 1 42 0 1639 152 37 4 chr6 134696178 134696448 -47718794 - AluJo SINE Alu -9 303 25 1047 269 131 43 chr6 134697138 134697174 -47718068 + L1MC4a LINE L1 5644 5675 -2133 351 0 0 0 chr6 134697174 134697213 -47718029 + (TG)n Simple_repeat Simple_repeat 2 40 0 1047 269 131 43 chr6 134697213 134697809 -47717433 + L1MC4a LINE L1 5675 6332 -1476 725 198 45 6 chr6 134698129 134698286 -47716956 - MER106B DNA MER1_type 0 1059 897 665 176 113 45 chr6 134698964 134699185 -47716057 - MER106A DNA MER1_type 0 236 1 1214 94 0 6 chr6 134699621 134699801 -47715441 + (TA)n Simple_repeat Simple_repeat 2 180 0 4626 159 35 64 chr6 134699801 134700718 -47714524 + MER21A LTR ERV1 23 912 -19 189 181 96 84 chr6 134701051 134701134 -47714108 + MIR3 SINE MIR 102 185 -23 1408 294 69 94 chr6 134701202 134701295 -47713947 + L2 LINE L2 994 1088 -2184 2154 97 0 0 chr6 134701295 134701574 -47713668 - AluSg SINE Alu -31 279 1 1408 294 69 94 chr6 134701574 134703045 -47712197 + L2 LINE L2 1088 2500 -772 968 142 4 142 chr6 134703045 134703299 -47711943 - MER20 DNA MER1_type 0 219 1 1408 294 69 94 chr6 134703299 134703867 -47711375 + L2 LINE L2 2500 3080 -192 27 0 0 0 chr6 134704025 134704052 -47711190 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr6 134705393 134705444 -47709798 + AT_rich Low_complexity Low_complexity 1 51 0 193 267 208 36 chr6 134705914 134706063 -47709179 - MIR SINE MIR -57 151 28 3468 92 44 17 chr6 134706718 134707198 -47708044 + LTR15 LTR ERV1 1 493 0 218 288 14 27 chr6 134707793 134707866 -47707376 + MER91 DNA MER1_type 119 190 0 * 292 190 61 159 chr6 134707866 134708027 -47707215 + MIR SINE MIR 17 161 -101 2549 208 54 105 chr6 134708053 134709208 -47706034 - MER52A LTR ERV1 0 1755 660 3838 250 76 32 chr6 134709297 134710546 -47704696 + L2 LINE L2 1715 3015 -298 3316 153 80 27 chr6 134710546 134710827 -47704415 - MER67B LTR ERV1 0 661 396 2888 85 3 0 chr6 134710827 134711181 -47704061 - THE1A LTR MaLR 0 355 1 3316 153 80 27 chr6 134711181 134711527 -47703715 - MER67B LTR ERV1 -265 396 1 238 203 49 138 chr6 134711717 134711840 -47703402 + L2 LINE L2 3147 3258 -55 711 220 12 40 chr6 134711841 134712014 -47703228 - L2 LINE L2 -820 2494 2327 942 247 87 44 chr6 134712533 134712877 -47702365 - MLT1I LTR MaLR -38 371 13 1683 274 56 11 chr6 134712888 134713409 -47701833 - L2 LINE L2 -982 2332 1789 231 321 132 0 chr6 134713806 134713912 -47701330 + L2 LINE L2 3194 3313 0 2085 151 3 0 chr6 134714683 134714994 -47700248 + AluSx SINE Alu 1 312 0 306 300 64 27 chr6 134715003 134715223 -47700019 + L1MC/D LINE L1 5304 5531 -2277 483 322 68 0 chr6 134715231 134715408 -47699834 - L2 LINE L2 -3022 292 104 * 2625 249 135 19 chr6 134715403 134716329 -47698913 + L2 LINE L2 1403 2435 -879 338 261 0 0 chr6 134716378 134716447 -47698795 - MIR SINE MIR -153 109 41 291 270 70 17 chr6 134717723 134717838 -47697404 - MIR SINE MIR -46 216 96 564 328 142 31 chr6 134718105 134718400 -47696842 + L2 LINE L2 211 472 -2842 1725 141 4 0 chr6 134718400 134718649 -47696593 - AluSx SINE Alu -62 250 1 564 328 142 31 chr6 134718649 134718902 -47696340 + L2 LINE L2 472 820 -2494 681 281 61 45 chr6 134719162 134719408 -47695834 + MIR SINE MIR 12 261 -1 1922 130 0 32 chr6 134719745 134720061 -47695181 + AluJb SINE Alu 5 310 -2 881 232 109 15 chr6 134720068 134720335 -47694907 + L1ME LINE L1 5325 5616 -548 520 181 205 16 chr6 134720540 134720667 -47694575 - MIR SINE MIR -53 209 59 346 273 58 8 chr6 134721221 134721342 -47693900 + MIR3 SINE MIR 4 130 -78 313 294 98 0 chr6 134721371 134721473 -47693769 - L2 LINE L2 -11 3261 3150 455 288 86 6 chr6 134721632 134721795 -47693447 + MIR SINE MIR 31 206 -56 5998 67 23 3 chr6 134722220 134722971 -47692271 - MER4E LTR ERV1 0 766 1 2344 85 0 0 chr6 134723070 134723365 -47691877 + AluY SINE Alu 1 295 -16 827 233 135 44 chr6 134723388 134723691 -47691551 + L1MC4a LINE L1 5221 5495 -1044 2183 125 0 3 chr6 134723691 134723996 -47691246 - AluSg SINE Alu -2 308 5 827 233 135 44 chr6 134723996 134724326 -47690916 + L1MC4a LINE L1 5495 5796 -743 306 218 238 0 chr6 134724688 134724789 -47690453 - MIR SINE MIR -21 241 117 9353 39 38 3 chr6 134724789 134726613 -47688629 + L1PA5 LINE L1 4301 6154 0 437 252 92 17 chr6 134726649 134726768 -47688474 - MIR SINE MIR -133 129 2 2313 100 0 13 chr6 134726780 134727089 -47688153 - AluSx SINE Alu -7 305 1 2202 73 0 73 chr6 134728183 134728541 -47686701 - AluSp SINE Alu 0 313 1 1578 171 17 34 chr6 134728544 134728836 -47686406 - AluJb SINE Alu -25 287 1 955 184 65 25 chr6 134729123 134729324 -47685918 - MER3 DNA MER1_type 0 209 1 1960 137 78 33 chr6 134729868 134730227 -47685015 - THE1C LTR MaLR 0 375 1 1960 130 14 0 chr6 134731567 134731873 -47683369 - AluSq SINE Alu 0 312 3 250 83 83 0 chr6 134732425 134732473 -47682769 - L1MC4 LINE L1 -1339 6703 6652 31 26 0 0 chr6 134732673 134732711 -47682531 + AT_rich Low_complexity Low_complexity 1 38 0 2259 108 0 3 chr6 134735626 134735922 -47679320 - AluSx SINE Alu -17 295 1 2431 224 42 30 chr6 134736416 134737392 -47677850 - L1M4b LINE L1 -5783 1076 16 21 0 0 0 chr6 134737393 134737414 -47677828 + AT_rich Low_complexity Low_complexity 1 21 0 282 222 25 62 chr6 134738175 134738246 -47676996 + L2 LINE L2 3190 3259 -13 258 105 0 0 chr6 134738246 134738284 -47676958 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 473 216 116 28 chr6 134738894 134739075 -47676167 + L1MC5 LINE L1 7711 7907 -54 197 291 47 47 chr6 134739909 134739995 -47675247 + MIR3 SINE MIR 91 176 -32 21 0 0 0 chr6 134740299 134740320 -47674922 + AT_rich Low_complexity Low_complexity 1 21 0 2230 122 0 0 chr6 134740527 134740823 -47674419 - AluSx SINE Alu -16 296 1 808 178 0 27 chr6 134741243 134741389 -47673853 + FLAM_C SINE Alu 2 143 0 940 170 16 70 chr6 134743771 134744387 -47670855 + MER4C LTR ERV1 1 465 0 393 287 43 43 chr6 134744692 134744856 -47670386 + MER5B DNA MER1_type 1 164 -14 265 358 65 31 chr6 134745071 134745395 -47669847 - L2 LINE L2 -2019 1295 961 189 344 65 65 chr6 134745423 134745516 -47669726 + L2 LINE L2 3143 3235 -37 785 226 102 18 chr6 134745542 134745565 -47669677 + MER58B DNA MER1_type 3 23 -2397 2022 159 52 25 chr6 134745565 134745930 -47669312 - THE1C LTR MaLR 0 375 1 785 226 102 18 chr6 134745930 134746210 -47669032 + MER58B DNA MER1_type 23 341 0 23 68 0 0 chr6 134747427 134747471 -47667771 + AT_rich Low_complexity Low_complexity 1 44 0 478 318 98 16 chr6 134747630 134747935 -47667307 - L1ME4a LINE L1 -244 5877 5548 2381 156 24 22 chr6 134748418 134748828 -47666414 + MLT2D LTR ERVL 1 411 -3 262 231 58 58 chr6 134748934 134749055 -47666187 - L1MC4a LINE L1 -1620 6188 6068 1682 96 73 89 chr6 134749150 134749505 -47665737 + LTR14B LTR ERVK 1 557 -51 1193 49 0 0 chr6 134749505 134749648 -47665594 + HERV17 LTR ERV1 5411 5553 -3073 333 62 0 0 chr6 134749649 134749697 -47665545 + HERV17 LTR ERV1 434 481 -8145 * 5613 59 36 9 chr6 134749684 134750405 -47664837 + HERVK14 LTR ERVK 5038 5764 -181 352 157 0 20 chr6 134750406 134750475 -47664767 + MER41C LTR ERV1 7 61 -493 696 42 50 118 chr6 134750475 134750594 -47664648 + HERVK14 LTR ERVK 5835 5945 0 2142 80 73 89 chr6 134750602 134751001 -47664241 + LTR14B LTR ERVK 7 608 0 714 278 79 20 chr6 134751002 134751351 -47663891 - L1MC4a LINE L1 -1911 5897 5534 3143 178 35 10 chr6 134751660 134752125 -47663117 + MER90 LTR ERV1 2 487 -127 2137 102 0 3 chr6 134752125 134752410 -47662832 - AluSg SINE Alu -15 295 12 3143 178 35 10 chr6 134752410 134752539 -47662703 + MER90 LTR ERV1 487 611 -3 255 318 35 0 chr6 134754140 134754225 -47661017 - MIR SINE MIR -84 178 91 1953 148 0 7 chr6 134755864 134756161 -47659081 + AluSx SINE Alu 18 312 0 2345 94 0 16 chr6 134756388 134756696 -47658546 + AluSq SINE Alu 1 303 -10 2143 122 0 7 chr6 134757955 134758243 -47656999 + AluSg SINE Alu 12 297 -13 269 219 0 86 chr6 134758341 134758446 -47656796 - MER113 DNA MER1_type? -421 100 5 551 233 108 17 chr6 134759020 134759196 -47656046 - MIR SINE MIR -70 192 1 337 312 117 13 chr6 134759490 134759644 -47655598 + MIR SINE MIR 20 189 -73 259 221 59 15 chr6 134759647 134759715 -47655527 - L3 LINE CR1 -154 1423 1353 2707 190 79 62 chr6 134759718 134760530 -47654712 + LTR1B LTR ERV1 1 826 0 769 161 77 81 chr6 134761210 134761458 -47653784 + L1MA9 LINE L1 6064 6310 -2 400 287 107 44 chr6 134761589 134761906 -47653336 + MER102b DNA MER1_type 1 337 -4 287 242 180 9 chr6 134762865 134763076 -47652166 + L1ME4a LINE L1 5832 6078 -43 26 74 0 0 chr6 134763085 134763139 -47652103 + AT_rich Low_complexity Low_complexity 1 54 0 267 175 0 0 chr6 134763190 134763230 -47652012 + Alu SINE Alu 1 40 -259 2094 134 3 0 chr6 134763971 134764263 -47650979 + AluSq SINE Alu 1 293 -20 1754 173 7 10 chr6 134765140 134765441 -47649801 - AluJb SINE Alu -12 300 1 354 231 119 15 chr6 134765591 134765725 -47649517 + L1ME LINE L1 5463 5610 -511 406 191 40 0 chr6 134765871 134765997 -47649245 + (TA)n Simple_repeat Simple_repeat 1 131 0 1889 181 64 10 chr6 134766013 134766417 -47648825 + MSTB LTR MaLR 1 426 0 25 0 0 0 chr6 134767126 134767151 -47648091 + AT_rich Low_complexity Low_complexity 1 25 0 262 98 0 98 chr6 134767151 134767202 -47648040 - MER75 DNA T2_type 0 504 459 183 371 0 0 chr6 134767393 134767455 -47647787 - MIR SINE MIR -119 143 82 945 220 37 14 chr6 134767627 134767841 -47647401 + MER20 DNA MER1_type 1 219 0 194 62 31 0 chr6 134769247 134769279 -47645963 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1973 81 0 12 chr6 134769279 134769527 -47645715 - AluSx SINE Alu -32 280 36 230 315 65 0 chr6 134769836 134769928 -47645314 + MIR3 SINE MIR 111 208 0 250 208 0 52 chr6 134773049 134773126 -47642116 + A-rich Low_complexity Low_complexity 2 74 0 665 54 43 0 chr6 134773939 134774032 -47641210 + L1PA11 LINE L1 6078 6174 0 184 237 290 32 chr6 134774437 134774530 -47640712 - L2 LINE L2 0 3313 3197 308 192 71 10 chr6 134774593 134774692 -47640550 - MER103 DNA DNA -9 157 53 2403 113 24 40 chr6 134777567 134777933 -47637309 + L1MA6 LINE L1 5620 5979 -321 2272 112 3 0 chr6 134777933 134778238 -47637004 + AluSq SINE Alu 1 306 -7 2403 113 24 40 chr6 134778238 134778322 -47636920 + L1MA6 LINE L1 5979 6063 -237 964 173 24 39 chr6 134778321 134778611 -47636631 + L1MB7 LINE L1 5925 6184 0 * 607 302 31 14 chr6 134778895 134779117 -47636125 - MIR SINE MIR -18 244 19 2027 143 0 10 chr6 134779798 134780112 -47635130 + AluSx SINE Alu 1 311 -1 2019 161 3 3 chr6 134780253 134780563 -47634679 - AluJb SINE Alu -2 310 1 2149 119 3 7 chr6 134781120 134781456 -47633786 + AluSx SINE Alu 1 312 0 2053 132 3 23 chr6 134781928 134782231 -47633011 - AluSq SINE Alu -16 297 1 1126 145 0 0 chr6 134783273 134783439 -47631803 + FRAM SINE Alu 1 166 0 228 262 49 0 chr6 134784133 134784194 -47631048 + L2 LINE L2 3205 3268 -4 228 238 16 48 chr6 134785508 134785571 -47629671 - L2 LINE L2 -16 3297 3237 273 356 0 0 chr6 134786439 134786526 -47628716 - L2 LINE L2 -999 2315 2229 268 189 0 0 chr6 134786558 134786611 -47628631 - 7SK RNA RNA -8 185 133 533 216 8 16 chr6 134786652 134786777 -47628465 - 7SK RNA RNA -68 125 2 24 67 0 0 chr6 134787230 134787275 -47627967 + AT_rich Low_complexity Low_complexity 1 45 0 460 287 33 6 chr6 134787373 134787554 -47627688 + L1ME LINE L1 5543 5728 -393 2303 90 0 3 chr6 134787614 134787904 -47627338 - AluSx SINE Alu -23 289 1 257 170 19 0 chr6 134787915 134787968 -47627274 - MER116 DNA Mariner -26 54 1 343 218 122 27 chr6 134788049 134788362 -47626880 + L1ME LINE L1 5352 5713 -457 22 0 0 0 chr6 134788922 134788944 -47626298 + AT_rich Low_complexity Low_complexity 1 22 0 221 0 35 0 chr6 134789818 134789847 -47625395 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2113 138 0 3 chr6 134789928 134790233 -47625009 - AluJb SINE Alu -8 304 1 660 210 80 143 chr6 134791967 134792504 -47622738 - MLT1D LTR MaLR 0 505 3 277 316 202 21 chr6 134793390 134793583 -47621659 + MIR SINE MIR 35 262 0 254 294 71 15 chr6 134793596 134793793 -47621449 + L1M4 LINE L1 3737 3944 -2202 27 87 0 0 chr6 134794942 134795011 -47620231 + AT_rich Low_complexity Low_complexity 1 69 0 329 344 110 9 chr6 134795251 134795469 -47619773 + MIR SINE MIR 5 244 -18 2367 93 3 0 chr6 134795598 134795899 -47619343 - AluSp SINE Alu -11 302 1 1719 184 0 19 chr6 134795959 134796084 -47619158 + AluJo SINE Alu 1 127 -185 207 0 0 0 chr6 134796084 134796107 -47619135 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1719 184 0 19 chr6 134796107 134796291 -47618951 + AluJo SINE Alu 127 304 -8 24 0 0 0 chr6 134796425 134796449 -47618793 + AT_rich Low_complexity Low_complexity 1 24 0 240 303 101 18 chr6 134796724 134796833 -47618409 + MIR SINE MIR 27 144 -118 1582 182 84 29 chr6 134797119 134797465 -47617777 - MLT1A1 LTR MaLR 0 365 1 323 227 70 62 chr6 134797473 134797746 -47617496 - L1ME4a LINE L1 -58 6063 5789 427 310 42 19 chr6 134797748 134797964 -47617278 - L1ME4a LINE L1 -374 5747 5527 1641 174 30 25 chr6 134797965 134798326 -47616916 + MLT1A1 LTR MaLR 1 363 -2 1964 141 37 7 chr6 134798925 134799224 -47616018 - AluSx SINE Alu -4 308 1 225 211 105 0 chr6 134799456 134799513 -47615729 - HAL1b LINE L1 -769 579 517 2552 86 0 0 chr6 134799878 134800191 -47615051 - AluSp SINE Alu 0 313 1 22 70 0 0 chr6 134801040 134801083 -47614159 + AT_rich Low_complexity Low_complexity 1 43 0 2239 119 0 0 chr6 134801298 134801600 -47613642 + AluSx SINE Alu 1 302 -10 187 286 16 0 chr6 134801844 134801907 -47613335 - L2 LINE L2 -1 3312 3249 187 250 42 31 chr6 134802894 134802990 -47612252 + L2 LINE L2 2741 2837 -477 1590 183 55 3 chr6 134803297 134803587 -47611655 - AluJo SINE Alu -7 305 1 273 336 66 8 chr6 134803845 134803967 -47611275 - L2 LINE L2 -188 3084 2956 1947 123 0 79 chr6 134804063 134804380 -47610862 + AluSx SINE Alu 4 295 -17 923 195 22 144 chr6 134804421 134804698 -47610544 + AluJo SINE Alu 48 290 -22 187 333 132 38 chr6 134804994 134805153 -47610089 - L3 LINE CR1 -143 1434 1261 2399 87 0 0 chr6 134805294 134805604 -47609638 + AluY SINE Alu 1 310 -1 216 304 8 88 chr6 134805918 134806025 -47609217 - L3 LINE CR1 -562 1015 918 1747 97 0 4 chr6 134806025 134806252 -47608990 + AluSg/x SINE Alu 65 290 -22 216 304 8 88 chr6 134806252 134806269 -47608973 - L3 LINE CR1 -659 918 901 189 0 0 0 chr6 134806274 134806295 -47608947 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 263 346 12 0 chr6 134806448 134806529 -47608713 - L2 LINE L2 -5 3267 3186 290 302 7 40 chr6 134808058 134808207 -47607035 + MIR SINE MIR 63 206 -56 5204 155 35 27 chr6 134808510 134809453 -47605789 + L1PB3 LINE L1 4122 5056 -1098 2215 118 3 0 chr6 134809453 134809757 -47605485 + AluSg SINE Alu 1 305 -5 5204 155 35 27 chr6 134809757 134810824 -47604418 + L1PB3 LINE L1 5056 6149 -5 24 0 0 0 chr6 134810826 134810850 -47604392 + AT_rich Low_complexity Low_complexity 1 24 0 250 204 0 0 chr6 134812867 134812916 -47602326 + L2 LINE L2 3265 3313 0 7253 45 17 0 chr6 134813137 134814353 -47600889 - L1PA6 LINE L1 -3 6151 4927 354 215 169 41 chr6 134814502 134814674 -47600568 - MER3 DNA MER1_type -2 207 14 534 269 43 45 chr6 134815025 134815240 -47600002 - MIR SINE MIR -36 226 6 208 340 105 39 chr6 134815367 134815520 -47599722 + MIR3 SINE MIR 31 193 -15 34 24 0 0 chr6 134815563 134815604 -47599638 + AT_rich Low_complexity Low_complexity 1 41 0 226 131 49 0 chr6 134815755 134815816 -47599426 + A-rich Low_complexity Low_complexity 2 65 0 1993 108 35 11 chr6 134816166 134816452 -47598790 - AluSc SINE Alu -16 293 1 273 323 77 60 chr6 134816836 134817071 -47598171 + MIR SINE MIR 22 260 -2 1714 184 159 11 chr6 134818480 134818920 -47596322 - MLT1D LTR MaLR 0 505 1 5347 124 95 51 chr6 134820502 134820756 -47594486 - Tigger3b DNA MER2_type -1798 1230 989 2309 110 3 0 chr6 134820756 134821065 -47594177 + AluSg SINE Alu 1 310 0 5347 124 95 51 chr6 134821065 134821137 -47594105 - Tigger3b DNA MER2_type -2039 989 922 1472 146 71 61 chr6 134821137 134821431 -47593811 + AluJo SINE Alu 3 299 -13 5347 124 95 51 chr6 134821431 134822247 -47592995 - Tigger3b DNA MER2_type -2106 922 36 1969 199 63 103 chr6 134822268 134822528 -47592714 + MER21B LTR ERV1 20 289 -574 2022 127 3 3 chr6 134822528 134822835 -47592407 + AluSx SINE Alu 1 307 0 1969 199 63 103 chr6 134822835 134823333 -47591909 + MER21B LTR ERV1 289 749 -114 2854 112 98 44 chr6 134823350 134823913 -47591329 + LTR49 LTR ERV1 1 593 -2 219 36 0 0 chr6 134824675 134824703 -47590539 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 310 229 14 0 chr6 134825916 134825986 -47589256 - L3 LINE CR1 -5 1572 1502 198 222 0 0 chr6 134826065 134826101 -47589141 + L2 LINE L2 3240 3275 -38 * 202 229 0 42 chr6 134826074 134826122 -47589120 + L2 LINE L2 3208 3253 -19 409 222 43 109 chr6 134826399 134826629 -47588613 + MLT1K LTR MaLR 374 588 0 2420 104 77 5 chr6 134826852 134827267 -47587975 + LTR56 LTR ERV1 1 445 0 234 321 73 9 chr6 134827417 134827526 -47587716 + MIR3 SINE MIR 82 197 -11 201 121 0 0 chr6 134828323 134828356 -47586886 + (CCCCCT)n Simple_repeat Simple_repeat 2 34 0 1780 147 56 0 chr6 134828356 134828641 -47586601 - AluSx SINE Alu -11 301 1 24 0 0 0 chr6 134829775 134829799 -47585443 + AT_rich Low_complexity Low_complexity 1 24 0 543 334 194 41 chr6 134830390 134831163 -47584079 + L3 LINE CR1 97 750 -827 384 22 0 0 chr6 134831163 134831208 -47584034 + (CA)n Simple_repeat Simple_repeat 2 46 0 543 334 194 41 chr6 134831208 134831239 -47584003 + L3 LINE CR1 750 775 -802 1508 170 3 63 chr6 134831239 134831539 -47583703 - AluJo SINE Alu -30 282 1 543 334 194 41 chr6 134831539 134832014 -47583228 + L3 LINE CR1 775 1574 -3 34 65 0 0 chr6 134832797 134832859 -47582383 + AT_rich Low_complexity Low_complexity 1 62 0 398 312 35 21 chr6 134832951 134833092 -47582150 + MIR SINE MIR 12 154 -108 1343 294 133 34 chr6 134833324 134834061 -47581181 + L2 LINE L2 1638 2447 -867 316 361 15 34 chr6 134834057 134834262 -47580980 + L2 LINE L2 2777 2977 -337 * 277 317 84 52 chr6 134834361 134834516 -47580726 + L2 LINE L2 3021 3188 -125 1991 199 12 30 chr6 134834516 134834729 -47580513 + MSTD LTR MaLR 1 205 -191 2214 96 36 3 chr6 134834729 134835030 -47580212 - AluSp SINE Alu -2 311 1 1991 199 12 30 chr6 134835030 134835219 -47580023 + MSTD LTR MaLR 205 396 0 277 317 84 52 chr6 134835219 134835312 -47579930 + L2 LINE L2 3188 3277 -36 2008 121 7 23 chr6 134835596 134835902 -47579340 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 134835960 134835981 -47579261 + AT_rich Low_complexity Low_complexity 1 21 0 1300 232 43 7 chr6 134836610 134836890 -47578352 - AluJo SINE Alu -22 290 1 650 170 9 0 chr6 134836902 134837014 -47578228 - AluSp/q SINE Alu -22 291 179 1327 81 0 11 chr6 134837016 134837190 -47578052 + AluY SINE Alu 129 300 -11 494 230 87 0 chr6 134837420 134837546 -47577696 - MIR SINE MIR -15 247 111 426 261 24 108 chr6 134837937 134838186 -47577056 + MER112 DNA MER1_type 17 244 -16 210 312 80 36 chr6 134838663 134838801 -47576441 - L2 LINE L2 -10 3303 3160 2248 129 0 0 chr6 134838982 134839293 -47575949 - AluSx SINE Alu -1 311 1 250 309 82 18 chr6 134839382 134839492 -47575750 + MIR SINE MIR 21 138 -70 201 330 96 43 chr6 134840542 134840657 -47574585 + MIR SINE MIR 21 141 -121 235 320 30 10 chr6 134841538 134841638 -47573604 - MIR SINE MIR -79 183 82 200 162 27 27 chr6 134843343 134843417 -47571825 + CT-rich Low_complexity Low_complexity 1 74 0 473 205 7 20 chr6 134843835 134843986 -47571256 + GA-rich Low_complexity Low_complexity 3 151 0 4122 177 91 21 chr6 134844009 134845295 -47569947 + L1MD2 LINE L1 4966 6347 -12 303 308 145 0 chr6 134845476 134845648 -47569594 + MIR SINE MIR 22 218 -44 23 0 0 0 chr6 134847083 134847106 -47568136 + AT_rich Low_complexity Low_complexity 1 23 0 1954 136 0 3 chr6 134847496 134847782 -47567460 + AluSx SINE Alu 7 291 -21 253 191 85 0 chr6 134848025 134848119 -47567123 + L1MA8 LINE L1 6189 6290 -1 2428 70 7 0 chr6 134848196 134848496 -47566746 + AluSq SINE Alu 1 302 -11 248 159 29 43 chr6 134848743 134848812 -47566430 - MER117 DNA MER1_type -127 70 3 211 380 32 49 chr6 134848880 134849348 -47565894 - L2 LINE L2 -636 2678 2219 199 270 142 40 chr6 134849847 134849995 -47565247 - MIR SINE MIR -71 191 29 1785 162 21 0 chr6 134852465 134852755 -47562487 + AluSx SINE Alu 3 298 -14 201 305 107 62 chr6 134853198 134853375 -47561867 + L3 LINE CR1 122 306 -1271 899 322 106 82 chr6 134853863 134854911 -47560331 + L3 LINE CR1 349 1421 -156 565 223 149 33 chr6 134854974 134855189 -47560053 - MER20B DNA MER1_type -5 778 539 351 238 185 20 chr6 134855239 134855390 -47559852 - MER20B DNA MER1_type -606 177 2 2179 129 0 0 chr6 134855584 134855887 -47559355 - AluSx SINE Alu -9 303 1 488 301 0 0 chr6 134855896 134856009 -47559233 + MIR SINE MIR 31 143 -119 396 340 75 28 chr6 134856230 134856442 -47558800 - MIR SINE MIR -10 252 31 2338 108 10 0 chr6 134856551 134856858 -47558384 + AluSx SINE Alu 1 310 -2 24 32 0 0 chr6 134857141 134857172 -47558070 + AT_rich Low_complexity Low_complexity 1 31 0 270 302 115 30 chr6 134859291 134859538 -47555704 + MLT1H LTR MaLR 50 290 -119 1594 218 81 7 chr6 134860015 134860450 -47554792 + MLT1C LTR MaLR 1 467 0 2105 121 0 25 chr6 134860887 134861201 -47554041 - AluSx SINE Alu -6 306 1 220 394 32 21 chr6 134861206 134861300 -47553942 + L2 LINE L2 3104 3198 -74 2082 123 7 7 chr6 134862204 134862505 -47552737 + AluSx SINE Alu 1 301 -11 484 282 198 41 chr6 134863152 134863462 -47551780 - L1ME4a LINE L1 -31 6090 5704 737 271 32 8 chr6 134863462 134863713 -47551529 - MIR SINE MIR -1 261 5 484 282 198 41 chr6 134863713 134863796 -47551446 - L1ME4a LINE L1 -417 5704 5635 1659 146 52 50 chr6 134864994 134865050 -47550192 - MER2 DNA MER2_type 0 344 290 1870 107 0 12 chr6 134865050 134865302 -47549940 + AluSx SINE Alu 60 308 -4 1659 146 52 50 chr6 134865302 134865588 -47549654 - MER2 DNA MER2_type -54 290 1 231 291 109 36 chr6 134869802 134869912 -47545330 - L2 LINE L2 -1 3312 3195 336 288 95 95 chr6 134870759 134871245 -47543997 - L1M2 LINE L1 -5831 1018 533 2172 73 13 40 chr6 134873104 134873405 -47541837 + AluSc SINE Alu 1 293 -16 311 193 18 16 chr6 134873656 134873786 -47541456 - MER3 DNA MER1_type -1 208 1 432 249 83 88 chr6 134873893 134874074 -47541168 + MIR SINE MIR 18 197 -65 182 323 77 0 chr6 134874164 134874229 -47541013 + L2 LINE L2 3202 3271 -1 1642 171 87 0 chr6 134874794 134875081 -47540161 - AluJo SINE Alu 0 312 1 2029 126 3 0 chr6 134875086 134875372 -47539870 + AluSx SINE Alu 17 303 -9 21 0 0 0 chr6 134876312 134876333 -47538909 + AT_rich Low_complexity Low_complexity 1 21 0 3381 169 74 18 chr6 134876432 134876597 -47538645 - L1MD2 LINE L1 -26 6333 6179 2180 116 0 0 chr6 134876597 134876890 -47538352 - AluSx SINE Alu -19 293 1 3381 169 74 18 chr6 134876890 134876921 -47538321 - L1MD2 LINE L1 -180 6179 6151 300 27 0 0 chr6 134876921 134876958 -47538284 + (TG)n Simple_repeat Simple_repeat 2 38 0 3381 169 74 18 chr6 134876958 134877528 -47537714 - L1MD2 LINE L1 -208 6151 5523 458 281 82 0 chr6 134877595 134877730 -47537512 + L2 LINE L2 3168 3313 0 539 256 85 31 chr6 134877928 134878186 -47537056 + L1MC4 LINE L1 5688 5959 -1849 1247 181 95 101 chr6 134878214 134878728 -47536514 + L1MC4 LINE L1 6859 7369 -673 1642 165 120 38 chr6 134878738 134879185 -47536057 - MLT1D LTR MaLR -34 471 1 707 250 226 30 chr6 134879191 134879683 -47535559 + L1MC4 LINE L1 7380 7967 -75 1105 181 53 10 chr6 134879685 134879988 -47535254 - MER33 DNA MER1_type 0 324 9 626 0 0 0 chr6 134881627 134881699 -47533543 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 180 184 0 0 chr6 134881779 134881828 -47533414 + T-rich Low_complexity Low_complexity 1 49 0 2476 42 0 16 chr6 134882596 134882904 -47532338 - AluY SINE Alu -8 303 1 189 250 68 45 chr6 134883409 134883497 -47531745 - L2 LINE L2 -426 2888 2799 2271 66 20 10 chr6 134883931 134884235 -47531007 + AluY SINE Alu 1 307 -4 281 282 39 83 chr6 134884564 134884720 -47530522 + MIR SINE MIR 30 178 -84 237 306 24 12 chr6 134884725 134884810 -47530432 - L2 LINE L2 0 3272 3187 183 42 0 0 chr6 134885092 134885116 -47530126 + (A)n Simple_repeat Simple_repeat 1 24 0 7936 66 3 3 chr6 134885130 134886099 -47529143 + LTR5 LTR ERVK 1 969 0 182 224 20 0 chr6 134886514 134886563 -47528679 + L3b LINE CR1 1183 1232 -351 192 283 0 0 chr6 134886903 134886949 -47528293 + L3b LINE CR1 1298 1343 -240 290 326 35 35 chr6 134887045 134887186 -47528056 - MIR SINE MIR -109 153 13 289 204 68 57 chr6 134887917 134888005 -47527237 + L2 LINE L2 3201 3289 -24 1367 261 81 20 chr6 134888023 134888625 -47526617 + L1ME3A LINE L1 5313 5951 -219 216 217 47 28 chr6 134888817 134888923 -47526319 + (TTATA)n Simple_repeat Simple_repeat 5 112 0 * 259 102 76 34 chr6 134888857 134889093 -47526149 + (TA)n Simple_repeat Simple_repeat 1 246 0 396 155 38 57 chr6 134889101 134889419 -47525823 + (TTATA)n Simple_repeat Simple_repeat 1 311 0 422 230 28 22 chr6 134889378 134889556 -47525686 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 2308 66 7 7 chr6 134889600 134889903 -47525339 + AluY SINE Alu 2 304 -7 289 236 31 31 chr6 134889987 134890148 -47525094 + (TTATA)n Simple_repeat Simple_repeat 3 163 0 10818 33 5 86 chr6 134890277 134891781 -47523461 - SVA Other Other 0 1386 5 487 57 57 0 chr6 134891784 134891854 -47523388 + L1PA11 LINE L1 5907 5980 -194 462 309 56 87 chr6 134892207 134892759 -47522483 - L2 LINE L2 0 3272 2740 270 268 248 20 chr6 134893163 134893316 -47521926 + MIR3 SINE MIR 18 205 -3 2073 128 14 3 chr6 134893451 134893747 -47521495 + AluSx SINE Alu 1 299 -13 194 219 206 0 chr6 134893810 134893883 -47521359 - MIR SINE MIR -7 255 168 1142 155 0 0 chr6 134893889 134894057 -47521185 + AluJb SINE Alu 129 296 -16 2258 108 0 0 chr6 134894487 134894783 -47520459 - AluSg SINE Alu -14 296 1 878 195 31 0 chr6 134895378 134895537 -47519705 - FRAM SINE Alu -2 164 1 377 347 79 23 chr6 134897108 134897324 -47517918 + MIR SINE MIR 6 233 -29 858 137 0 0 chr6 134898349 134898473 -47516769 + AluJb SINE Alu 165 288 -24 1876 171 0 28 chr6 134899295 134899616 -47515626 + AluJb SINE Alu 1 312 0 26 50 0 0 chr6 134899700 134899740 -47515502 + AT_rich Low_complexity Low_complexity 1 40 0 1947 153 0 3 chr6 134903983 134904278 -47510964 - AluJo SINE Alu -17 295 2 705 252 70 52 chr6 134905074 134905304 -47509938 - MIR SINE MIR -23 239 6 2471 88 3 0 chr6 134905352 134905660 -47509582 - AluSp SINE Alu -4 309 1 232 200 36 0 chr6 134906971 134907026 -47508216 + GA-rich Low_complexity Low_complexity 1 57 0 216 0 0 0 chr6 134907485 134907509 -47507733 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 31 76 0 0 chr6 134909452 134909518 -47505724 + AT_rich Low_complexity Low_complexity 1 66 0 394 293 110 87 chr6 134911871 134912719 -47502523 + L1M2 LINE L1 550 1416 -5433 338 306 104 80 chr6 134912404 134912819 -47502423 - L1M2 LINE L1 -5757 1092 668 * 262 211 39 0 chr6 134914641 134914693 -47500549 + MIR SINE MIR 204 257 -5 239 259 0 0 chr6 134916764 134916818 -47498424 + L2 LINE L2 3241 3294 -19 31 0 0 0 chr6 134917163 134917194 -47498048 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr6 134917860 134917882 -47497360 + AT_rich Low_complexity Low_complexity 1 22 0 588 274 93 44 chr6 134921000 134921226 -47494016 - MIR SINE MIR -14 248 12 846 121 8 0 chr6 134921449 134921581 -47493661 + L1PB1 LINE L1 6018 6150 -1 191 299 183 30 chr6 134921583 134921747 -47493495 + MIR SINE MIR 20 208 -54 2335 97 3 0 chr6 134921784 134922084 -47493158 - AluSq SINE Alu -11 302 2 664 266 106 47 chr6 134922172 134922891 -47492351 - L1ME4a LINE L1 -4 6117 5357 1212 57 0 13 chr6 134923104 134923262 -47491980 - L1PA5 LINE L1 -6 6148 5993 338 295 18 27 chr6 134923351 134923463 -47491779 - L2 LINE L2 -1 3271 3161 2134 171 22 18 chr6 134923753 134924208 -47491034 - L1MB4 LINE L1 -1 6179 5723 560 308 113 5 chr6 134925128 134925349 -47489893 + MIR SINE MIR 4 248 -14 23 54 0 0 chr6 134926738 134926775 -47488467 + AT_rich Low_complexity Low_complexity 1 37 0 567 208 0 0 chr6 134926775 134926871 -47488371 + FAM SINE Alu 43 138 -47 261 217 17 33 chr6 134926874 134926934 -47488308 + L2 LINE L2 3255 3313 0 713 248 230 43 chr6 134929090 134929610 -47485632 - MLT1G1 LTR MaLR -2 588 1 415 309 73 0 chr6 134929652 134929775 -47485467 + MER119 DNA MER1_type 2 133 -450 * 479 227 7 35 chr6 134929766 134929907 -47485335 + MER119 DNA MER1_type 447 583 0 267 185 37 0 chr6 134929946 134930000 -47485242 - Zaphod DNA AcHobo 0 4031 3976 * 481 349 102 33 chr6 134929995 134930330 -47484912 - MER115 DNA AcHobo -245 448 91 2183 220 139 72 chr6 134930697 134931843 -47483399 - MER69B DNA AcHobo -3 1223 1 229 274 52 111 chr6 134931891 134932044 -47483198 + MIR3 SINE MIR 6 149 -59 254 357 164 0 chr6 134932937 134933077 -47482165 - MER91A DNA MER1_type -20 176 14 3607 225 88 50 chr6 134935161 134936123 -47479119 - L1MC4 LINE L1 -95 7713 6789 710 34 0 0 chr6 134936123 134936211 -47479031 - L1PA5 LINE L1 -2 6152 6065 3607 225 88 50 chr6 134936211 134936765 -47478477 - L1MC4 LINE L1 -1019 6789 6200 1965 148 7 0 chr6 134936765 134937062 -47478180 - AluJb SINE Alu -13 299 1 3607 225 88 50 chr6 134937062 134937157 -47478085 - L1MC4 LINE L1 -1608 6200 6110 1673 201 118 44 chr6 134937217 134937348 -47477894 - L1MC4 LINE L1 -1847 5961 5841 2242 106 0 7 chr6 134937348 134937650 -47477592 - AluSq SINE Alu -13 300 1 1673 201 118 44 chr6 134937650 134938036 -47477206 - L1MC4 LINE L1 -1967 5841 5406 390 264 106 35 chr6 134938081 134938487 -47476755 - L1MC4 LINE L1 -903 5243 4809 304 200 40 13 chr6 134938831 134938906 -47476336 + L3 LINE CR1 1500 1576 -1 2365 68 3 10 chr6 134939503 134939799 -47475443 + AluSp SINE Alu 1 294 -19 359 248 135 57 chr6 134940495 134940636 -47474606 + L2 LINE L2 3161 3312 -1 2994 84 12 0 chr6 134940643 134941049 -47474193 + L1PA13 LINE L1 5751 6161 -2 736 243 20 45 chr6 134941357 134941559 -47473683 - MIR SINE MIR -47 215 19 249 306 37 56 chr6 134941799 134941841 -47473401 - L2 LINE L2 0 3313 3272 540 288 109 63 chr6 134941841 134942271 -47472971 - LTR16A LTR ERVL 0 450 1 249 306 37 56 chr6 134942271 134942336 -47472906 - L2 LINE L2 -41 3272 3208 250 331 96 24 chr6 134942486 134942652 -47472590 + MIR SINE MIR 83 260 -2 2447 68 3 0 chr6 134943130 134943426 -47471816 + AluSc SINE Alu 1 297 -12 267 349 67 7 chr6 134943444 134943593 -47471649 - MIR3 SINE MIR -4 204 47 28 0 0 0 chr6 134944506 134944534 -47470708 + AT_rich Low_complexity Low_complexity 1 28 0 1331 196 8 15 chr6 134944999 134945259 -47469983 + AluJo SINE Alu 1 258 -54 26 30 0 0 chr6 134945751 134945784 -47469458 + AT_rich Low_complexity Low_complexity 1 33 0 356 191 169 0 chr6 134947760 134947849 -47467393 - MER94 DNA DNA -3 131 28 186 353 68 32 chr6 134947942 134948191 -47467051 - L2 LINE L2 -2222 1092 835 363 323 89 61 chr6 134948227 134948620 -47466622 - LTR33 LTR ERVL -15 506 103 2098 131 59 11 chr6 134948726 134949084 -47466158 + THE1C LTR MaLR 1 375 0 2841 296 48 28 chr6 134949306 134950922 -47464320 + L1MEc LINE L1 56 1703 -4693 * 5768 154 26 7 chr6 134950919 134951893 -47463349 - L1M1 LINE L1 -6558 1007 16 1500 123 51 24 chr6 134951896 134952189 -47463053 - L1MA7 LINE L1 -46 6245 5945 357 206 14 0 chr6 134952216 134952289 -47462953 - MER33 DNA MER1_type -244 80 7 425 179 90 48 chr6 134952294 134952439 -47462803 + L1MEc LINE L1 2267 2417 -3979 * 532 213 16 0 chr6 134952406 134952533 -47462709 + L1ME1 LINE L1 6102 6230 -5 342 336 53 9 chr6 134952887 134953252 -47461990 - L1MC/D LINE L1 -302 5819 5436 3535 40 7 11 chr6 134954182 134954632 -47460610 + LTR7 LTR ERV1 1 448 -2 19301 85 57 48 chr6 134954634 134957896 -47457346 + HERVH LTR ERV1 1 3290 -4423 3237 106 6 2 chr6 134957886 134958386 -47456856 + HERVH LTR ERV1 3492 3993 -3720 * 4226 133 1 1 chr6 134958388 134959050 -47456192 + HERVH LTR ERV1 4488 5149 -2564 1313 115 23 14 chr6 134959051 134959269 -47455973 + HERVH LTR ERV1 5600 5819 -1894 2420 77 45 13 chr6 134959269 134959647 -47455595 + HERVH LTR ERV1 7324 7713 0 3601 44 0 7 chr6 134959647 134960098 -47455144 + LTR7 LTR ERV1 1 448 -2 275 336 25 17 chr6 134961733 134961852 -47453390 + MIR SINE MIR 119 238 -24 424 327 26 51 chr6 134962153 134962309 -47452933 + L2 LINE L2 3121 3272 0 35 41 0 0 chr6 134962403 134962452 -47452790 + AT_rich Low_complexity Low_complexity 1 49 0 5343 191 17 26 chr6 134963266 134965225 -47450017 - L1MB7 LINE L1 -28 6156 4224 2155 89 6 19 chr6 134965225 134965539 -47449703 + AluY SINE Alu 2 311 0 5343 191 17 26 chr6 134965539 134965810 -47449432 - L1MB7 LINE L1 -1960 4224 3952 2641 159 19 17 chr6 134965820 134966349 -47448893 - L1MA7 LINE L1 -4 6287 5758 2198 128 12 39 chr6 134966357 134966771 -47448471 + L1M2 LINE L1 5255 5657 -655 432 0 0 0 chr6 134966775 134966823 -47448419 + (TG)n Simple_repeat Simple_repeat 2 49 0 2435 223 16 31 chr6 134966824 134967592 -47447650 - L1MB7 LINE L1 -2197 3949 3194 15231 173 35 6 chr6 134967600 134972054 -47443188 + L1PB2 LINE L1 1 4693 -2174 8808 113 12 6 chr6 134972054 134973333 -47441909 + HSMAR1 DNA Mariner 1 1287 0 15231 173 35 6 chr6 134973333 134975113 -47440129 + L1PB2 LINE L1 4693 6419 -448 1255 129 65 0 chr6 134975113 134975325 -47439917 + L1PB2 LINE L1 6637 6867 0 21 0 0 0 chr6 134975327 134975348 -47439894 + AT_rich Low_complexity Low_complexity 1 21 0 293 301 40 45 chr6 134975506 134975705 -47439537 + L1MC/D LINE L1 5605 5802 -2006 2724 234 14 0 chr6 134975931 134976695 -47438547 - L1MB7 LINE L1 -2933 3213 2439 398 326 60 38 chr6 134976748 134976932 -47438310 - MIR3 SINE MIR -5 203 16 1478 218 58 25 chr6 134977692 134978054 -47437188 - MLT1A2 LTR MaLR 0 374 1 1050 269 100 25 chr6 134978389 134979076 -47436166 - L2 LINE L2 -1 3312 2569 235 229 43 79 chr6 134979209 134979349 -47435893 - L1ME3A LINE L1 -71 6099 5965 319 198 25 12 chr6 134979999 134980080 -47435162 - HAL1 LINE L1 -632 1875 1794 334 256 23 105 chr6 134980200 134980275 -47434967 - L1MDa LINE L1 -4470 2070 2015 2230 119 0 0 chr6 134980275 134980587 -47434655 + AluSx SINE Alu 1 312 0 334 256 23 105 chr6 134980587 134980683 -47434559 - L1MDa LINE L1 -4525 2015 1913 222 295 84 0 chr6 134981770 134981865 -47433377 + MIR SINE MIR 54 156 -106 303 295 95 46 chr6 134983390 134983595 -47431647 + MIR SINE MIR 6 211 -51 236 221 44 147 chr6 134983748 134983784 -47431458 - MIR SINE MIR -64 144 106 2200 111 3 0 chr6 134983784 134984082 -47431160 - AluSx SINE Alu -13 299 1 236 221 44 147 chr6 134984082 134984181 -47431061 - MIR SINE MIR -102 106 23 573 266 0 0 chr6 134984680 134984808 -47430434 + FLAM_A SINE Alu 1 128 -5 625 277 30 10 chr6 134986553 134986755 -47428487 - LTR16A LTR ERVL 0 450 245 330 217 75 58 chr6 134986810 134986930 -47428312 - MIR SINE MIR -109 153 32 35 24 0 0 chr6 134987068 134987110 -47428132 + AT_rich Low_complexity Low_complexity 1 42 0 440 263 89 0 chr6 134988839 134989052 -47426190 + L1ME4a LINE L1 5593 5824 -297 1893 162 17 0 chr6 134989068 134989358 -47425884 + AluJb SINE Alu 1 295 -17 502 188 18 9 chr6 134989359 134989471 -47425771 + L1PA15 LINE L1 6047 6159 -6 496 338 100 8 chr6 134989612 134990200 -47425042 - L1MC4 LINE L1 -142 7900 7259 322 222 65 39 chr6 134990263 134990416 -47424826 + L1ME4a LINE L1 5916 6072 -49 371 342 9 2 chr6 134991696 134991834 -47423408 + MIR3 SINE MIR 15 152 -68 199 277 46 31 chr6 134991885 134991950 -47423292 - L2 LINE L2 -12 3301 3236 686 267 10 83 chr6 134992354 134992642 -47422600 + MLT1H1 LTR MaLR 1 267 -288 825 165 0 0 chr6 134995526 134995659 -47419583 - FLAM_C SINE Alu 0 133 1 191 359 88 11 chr6 134996065 134996246 -47418996 - L3b LINE CR1 -11 1572 1378 522 282 112 19 chr6 134997069 134997275 -47417967 + MIR SINE MIR 19 243 -19 233 279 51 0 chr6 134997323 134997402 -47417840 + L1ME LINE L1 5679 5761 -360 2227 128 0 0 chr6 134998084 134998389 -47416853 + AluSx SINE Alu 1 305 -7 183 326 33 33 chr6 134998399 134998491 -47416751 - MIR3 SINE MIR -116 92 1 231 276 70 92 chr6 134999845 135000030 -47415212 - MIR SINE MIR -62 200 20 659 240 58 31 chr6 135000036 135000261 -47414981 + MIR SINE MIR 22 252 -10 766 118 37 74 chr6 135000509 135000644 -47414598 + FLAM_C SINE Alu 1 130 -3 243 188 0 0 chr6 135000659 135000723 -47414519 - L1MC4 LINE L1 -1339 6703 6640 383 355 9 43 chr6 135000743 135000954 -47414288 - MIR SINE MIR -31 231 28 288 0 0 0 chr6 135001876 135001908 -47413334 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 219 114 0 0 chr6 135002098 135002133 -47413109 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2023 125 0 0 chr6 135002135 135002416 -47412826 - AluSx SINE Alu -31 281 1 237 139 0 0 chr6 135004781 135004824 -47410418 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 246 238 75 25 chr6 135005810 135005890 -47409352 - MIR SINE MIR -66 196 113 248 267 324 0 chr6 135006385 135006490 -47408752 - MIR3 SINE MIR -28 180 42 779 217 84 54 chr6 135006590 135006982 -47408260 + L1MC5 LINE L1 7534 7937 -24 299 277 31 57 chr6 135007302 135007461 -47407781 + MIR SINE MIR 45 199 -63 6330 49 52 1 chr6 135007476 135008307 -47406935 + L1PA7 LINE L1 5281 6153 -1 21 57 0 0 chr6 135008364 135008399 -47406843 + AT_rich Low_complexity Low_complexity 1 35 0 1876 124 15 4 chr6 135008800 135009073 -47406169 + AluSx SINE Alu 5 280 -32 224 30 30 0 chr6 135009073 135009106 -47406136 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 474 92 0 13 chr6 135009118 135009194 -47406048 - MER101 LTR ERV1 0 474 400 1434 156 29 34 chr6 135009642 135009880 -47405362 + AluSx SINE Alu 61 297 -15 228 331 114 18 chr6 135010453 135010619 -47404623 + MIR3 SINE MIR 26 207 -1 744 289 27 0 chr6 135011777 135012033 -47403209 + MER46C DNA MER2_type 73 335 -3 23 33 0 0 chr6 135012357 135012387 -47402855 + AT_rich Low_complexity Low_complexity 1 30 0 373 322 13 60 chr6 135013049 135013198 -47402044 - MER5B DNA MER1_type -32 157 3 2435 58 3 0 chr6 135013534 135013828 -47401414 + AluY SINE Alu 3 297 -14 189 0 0 0 chr6 135014527 135014548 -47400694 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 1418 265 134 28 chr6 135014758 135015294 -47399948 + MLT1E LTR MaLR 1 593 0 601 258 40 27 chr6 135015325 135015550 -47399692 - L1ME3A LINE L1 -21 6218 5991 2270 102 0 3 chr6 135015550 135015853 -47399389 - AluSx SINE Alu -10 302 1 1268 232 69 46 chr6 135015859 135016363 -47398879 - L1ME3A LINE L1 -299 5940 5425 312 295 15 96 chr6 135016496 135016563 -47398679 - L1ME3A LINE L1 -1209 5006 4935 1731 200 8 101 chr6 135016563 135017078 -47398164 - MLT1C LTR MaLR 0 467 1 312 295 15 96 chr6 135017078 135017281 -47397961 - L1ME3A LINE L1 -1280 4935 4758 * 357 291 65 58 chr6 135017268 135017820 -47397422 - L1MCa LINE L1 -4777 1619 1072 180 0 0 0 chr6 135017820 135017840 -47397402 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2039 137 11 0 chr6 135017843 135018128 -47397114 - AluSx SINE Alu -24 288 1 357 291 65 58 chr6 135018128 135018176 -47397066 - L1MCa LINE L1 -5325 1071 1011 700 244 41 15 chr6 135018186 135018383 -47396859 - MIR SINE MIR -31 231 30 699 264 101 4 chr6 135018438 135018665 -47396577 - MIR SINE MIR 0 262 14 405 0 0 0 chr6 135019268 135019313 -47395929 + (CA)n Simple_repeat Simple_repeat 2 46 0 458 260 64 44 chr6 135019830 135020034 -47395208 + L2 LINE L2 3102 3309 -4 4548 187 77 8 chr6 135020320 135020658 -47394584 + L1MC3 LINE L1 6503 6816 -969 2410 87 60 0 chr6 135020658 135020992 -47394250 - THE1A LTR MaLR -1 354 1 4548 187 77 8 chr6 135020992 135021730 -47393512 + L1MC3 LINE L1 6816 7653 -132 2060 130 72 20 chr6 135021735 135022081 -47393161 - THE1B LTR MaLR 0 364 1 9890 98 4 1 chr6 135022200 135023592 -47391650 - THE1B-int LTR MaLR -184 1396 1 2144 131 73 14 chr6 135023592 135023936 -47391306 - THE1B LTR MaLR 0 364 1 425 170 71 9 chr6 135023945 135024057 -47391185 + L1MC3 LINE L1 7666 7784 -1 268 278 14 0 chr6 135024641 135024713 -47390529 - L2 LINE L2 -78 3235 3163 8714 204 80 25 chr6 135024752 135025361 -47389881 + L1MC/D LINE L1 10 585 -5841 180 0 0 0 chr6 135025361 135025381 -47389861 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8714 204 80 25 chr6 135025381 135026090 -47389152 + L1MC/D LINE L1 585 1254 -5172 962 223 23 104 chr6 135026090 135026485 -47388757 + MLT1A1 LTR MaLR 1 363 -2 8714 204 80 25 chr6 135026485 135027289 -47387953 + L1MC/D LINE L1 1254 2248 -4178 1855 226 12 40 chr6 135027297 135027868 -47387374 + L1MC/D LINE L1 4938 5492 -934 267 167 83 0 chr6 135027907 135027967 -47387275 - MSTD LTR MaLR -2 394 330 1293 174 69 25 chr6 135028009 135028254 -47386988 + L1MC/D LINE L1 5500 5768 -844 2648 118 38 12 chr6 135028254 135028671 -47386571 + MSTA LTR MaLR 1 428 0 1293 174 69 25 chr6 135028671 135028776 -47386466 + L1MC/D LINE L1 5768 5867 -745 2697 73 6 14 chr6 135028776 135029132 -47386110 + THE1A LTR MaLR 1 353 -2 9506 92 99 0 chr6 135029134 135030572 -47384670 + THE1A-int LTR MaLR 1 1580 0 2563 97 11 0 chr6 135030572 135030921 -47384321 + THE1A LTR MaLR 1 353 -2 1264 141 5 0 chr6 135030930 135031136 -47384106 + L1MC/D LINE L1 5880 6086 -527 679 364 8 8 chr6 135031288 135031538 -47383704 - MIR SINE MIR 0 262 13 368 312 124 9 chr6 135031559 135031777 -47383465 + L3 LINE CR1 1171 1413 -164 188 81 189 0 chr6 135031846 135031883 -47383359 + L3b LINE CR1 1530 1573 -10 2242 105 0 10 chr6 135032461 135032765 -47382477 - AluY SINE Alu -10 301 1 340 277 62 66 chr6 135033627 135033883 -47381359 - MLT1K LTR MaLR -169 419 165 6985 176 99 25 chr6 135034119 135035602 -47379640 - MER52A LTR ERV1 0 1755 83 2131 94 37 3 chr6 135035801 135036100 -47379142 + AluSg1 SINE Alu 1 309 0 1926 74 0 12 chr6 135036133 135036390 -47378852 + L1PA6 LINE L1 5901 6154 0 236 235 165 43 chr6 135036534 135036649 -47378593 - MIR SINE MIR -126 136 8 453 281 24 37 chr6 135037132 135037296 -47377946 + MER5B DNA MER1_type 1 162 -16 503 226 0 0 chr6 135037872 135037965 -47377277 + AluSg1 SINE Alu 1 93 -216 581 202 0 24 chr6 135038066 135038190 -47377052 + AluSp/q SINE Alu 154 274 -39 774 138 158 7 chr6 135038924 135039076 -47376166 + MER1B DNA MER1_type 1 175 -122 818 191 36 0 chr6 135039144 135039312 -47375930 + MER1B DNA MER1_type 166 339 0 605 191 34 41 chr6 135039831 135039978 -47375264 + MSTD LTR MaLR 251 396 0 550 277 62 53 chr6 135040404 135040659 -47374583 + MIR SINE MIR 1 252 -10 189 0 0 0 chr6 135040998 135041019 -47374223 + (T)n Simple_repeat Simple_repeat 1 21 0 192 152 0 0 chr6 135041149 135041182 -47374060 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 329 272 190 0 chr6 135045685 135045843 -47369399 - L2 LINE L2 -5 3308 3121 221 238 105 48 chr6 135045967 135046072 -47369170 + L2 LINE L2 3144 3254 -18 189 107 0 0 chr6 135046200 135046228 -47369014 + (TG)n Simple_repeat Simple_repeat 1 28 0 284 288 174 27 chr6 135046666 135046850 -47368392 + L2 LINE L2 3093 3303 -10 714 189 0 0 chr6 135046987 135047109 -47368133 - Tigger3(Golem) DNA MER2_type 0 3029 2908 245 71 71 0 chr6 135047261 135047303 -47367939 + GA-rich Low_complexity Low_complexity 5 49 0 654 169 127 42 chr6 135047304 135047493 -47367749 - THE1C LTR MaLR -170 205 1 1105 322 75 16 chr6 135047520 135048313 -47366929 - HERV16 LTR ERVL -2827 2175 1277 347 167 0 56 chr6 135048336 135048408 -47366834 - LTR16A1 LTR ERVL -332 125 58 231 274 0 0 chr6 135048589 135048651 -47366591 + L2 LINE L2 3242 3303 -10 1795 175 22 27 chr6 135048946 135049311 -47365931 - MLT1A1 LTR MaLR -2 363 1 557 245 205 70 chr6 135049844 135050244 -47364998 - L1ME4a LINE L1 -3 6118 5665 319 257 35 118 chr6 135050260 135050404 -47364838 - L2 LINE L2 0 3313 3182 1283 186 103 53 chr6 135050464 135050824 -47364418 - MLT1B LTR MaLR 0 390 13 2110 215 7 9 chr6 135050850 135051296 -47363946 - MLT1B-int LTR MaLR -28 1707 1263 1739 210 60 3 chr6 135051411 135051854 -47363388 - MLT1B-int LTR MaLR -764 607 6 1120 218 25 81 chr6 135051858 135052252 -47362990 - MLT1A2 LTR MaLR 0 374 3 387 206 22 0 chr6 135052363 135052455 -47362787 + MER53 DNA DNA 1 94 -95 * 457 149 0 0 chr6 135052381 135052468 -47362774 - MER53 DNA DNA -10 179 93 298 294 54 0 chr6 135053907 135053999 -47361243 + L2 LINE L2 3184 3280 -33 25 51 0 0 chr6 135054764 135054803 -47360439 + AT_rich Low_complexity Low_complexity 1 39 0 284 260 293 8 chr6 135055020 135055143 -47360099 - MER5B DNA MER1_type -17 161 4 244 250 0 0 chr6 135055175 135055231 -47360011 + A-rich Low_complexity Low_complexity 1 56 0 609 271 68 0 chr6 135056209 135056401 -47358841 + MIR SINE MIR 21 225 -37 508 213 24 0 chr6 135056727 135056854 -47358388 - L1MC1 LINE L1 -5 6328 6199 297 89 0 0 chr6 135057448 135057493 -47357749 + (TA)n Simple_repeat Simple_repeat 2 46 0 * 306 0 0 0 chr6 135057492 135057526 -47357716 + (GA)n Simple_repeat Simple_repeat 2 35 0 14303 121 49 12 chr6 135057905 135060026 -47355216 + Tigger1 DNA MER2_type 1 2040 -378 189 0 0 0 chr6 135060026 135060047 -47355195 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1786 152 4 0 chr6 135060056 135060326 -47354916 - AluSx SINE Alu -39 273 3 14303 121 49 12 chr6 135060326 135060520 -47354722 + Tigger1 DNA MER2_type 2047 2414 -4 612 201 61 9 chr6 135060971 135061153 -47354089 + L1MC4 LINE L1 6416 6606 -1189 1755 186 17 22 chr6 135061173 135061533 -47353709 - MLT1A1 LTR MaLR -7 358 1 2813 234 107 24 chr6 135061553 135061701 -47353541 + L1MC4 LINE L1 6937 7071 -971 246 32 0 0 chr6 135061701 135061732 -47353510 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2813 234 107 24 chr6 135061732 135062603 -47352639 + L1MC4 LINE L1 7071 8041 -1 830 200 71 6 chr6 135063265 135063435 -47351807 + MER5A DNA MER1_type 9 189 0 544 283 55 33 chr6 135065197 135065447 -47349795 - MIR SINE MIR -1 261 5 332 327 10 10 chr6 135065925 135066026 -47349216 + MIR SINE MIR 30 130 -78 2065 128 3 10 chr6 135068167 135068472 -47346770 - AluSx SINE Alu -9 303 1 217 314 22 80 chr6 135069022 135069159 -47346083 + MIR SINE MIR 1 129 -133 983 181 106 13 chr6 135069235 135069462 -47345780 - MSTA LTR MaLR 0 428 181 2247 82 21 6 chr6 135069567 135069907 -47345335 - L1PA10 LINE L1 -32 6136 5792 483 60 28 2 chr6 135069909 135069989 -47345253 + L1P5 LINE L1 5526 5606 -545 819 98 184 6 chr6 135070666 135070829 -47344413 - L1MC/D LINE L1 -628 5614 5423 2565 248 53 11 chr6 135070877 135071763 -47343479 - L1M4 LINE L1 -1894 4252 3330 4155 113 100 131 chr6 135071775 135073200 -47342042 - pTR5 LTR ERV1 0 2438 66 979 219 48 8 chr6 135073200 135073574 -47341668 - L1M4 LINE L1 -2822 3324 2936 2528 182 52 7 chr6 135073640 135074184 -47341058 - L1MB7 LINE L1 -72 6112 5545 2191 79 4 4 chr6 135074241 135074518 -47340724 + AluSc SINE Alu 3 279 -30 425 335 91 18 chr6 135074569 135074900 -47340342 - L1MB7 LINE L1 -1130 5016 4662 387 0 0 0 chr6 135076403 135076446 -47338796 + (CA)n Simple_repeat Simple_repeat 1 43 0 217 247 79 22 chr6 135077758 135077847 -47337395 + MIR SINE MIR 44 137 -125 686 322 41 31 chr6 135077941 135078360 -47336882 + LTR16A LTR ERVL 16 438 -12 2937 320 51 18 chr6 135078371 135079848 -47335394 + HERV16 LTR ERVL 1 1526 -3470 1163 346 23 32 chr6 135079881 135080531 -47334711 + HERV16 LTR ERVL 1785 2428 -3336 510 327 81 4 chr6 135080573 135080930 -47334312 + HERV16 LTR ERVL 2470 2859 -2137 507 209 0 0 chr6 135080936 135081046 -47334196 + (TATATG)n Simple_repeat Simple_repeat 5 114 0 5938 51 4 0 chr6 135081049 135081817 -47333425 - L1PA7 LINE L1 -22 6132 5362 704 332 44 19 chr6 135081826 135082200 -47333042 + HERV16 LTR ERVL 2862 3091 -1905 376 303 37 0 chr6 135082212 135082321 -47332921 + HERV16 LTR ERVL 3334 3446 -2318 453 289 92 31 chr6 135082343 135082603 -47332639 + HERV16 LTR ERVL 3372 3557 -1439 1277 304 70 26 chr6 135082613 135083295 -47331947 + HERV16 LTR ERVL 3936 4647 -1117 451 363 32 43 chr6 135084031 135084403 -47330839 + LTR16A LTR ERVL 68 435 -15 2304 86 13 0 chr6 135085042 135085343 -47329899 - AluSp SINE Alu -8 305 1 265 72 72 145 chr6 135085366 135085435 -47329807 + L1MA2 LINE L1 6040 6103 -201 1444 126 38 4 chr6 135085437 135085699 -47329543 + L1MA2 LINE L1 6034 6304 0 255 121 52 0 chr6 135086030 135086088 -47329154 + GA-rich Low_complexity Low_complexity 2 62 0 21 0 0 0 chr6 135086359 135086380 -47328862 + AT_rich Low_complexity Low_complexity 1 21 0 4762 147 55 3 chr6 135087112 135088066 -47327176 + L1MB2 LINE L1 5175 6171 0 894 276 41 16 chr6 135089106 135089352 -47325890 + MIR SINE MIR 11 262 0 430 302 115 17 chr6 135090101 135090336 -47324906 - MIR SINE MIR -3 259 2 640 331 107 0 chr6 135090504 135090776 -47324466 - L3 LINE CR1 -12 1565 1265 452 313 23 0 chr6 135090847 135090975 -47324267 + MIR SINE MIR 4 134 -128 222 91 0 0 chr6 135091252 135091285 -47323957 + (TG)n Simple_repeat Simple_repeat 2 34 0 438 281 92 44 chr6 135091584 135091999 -47323243 + MLT1J1 LTR MaLR 1 458 -53 1518 270 164 20 chr6 135093021 135093241 -47322001 + L2 LINE L2 2396 2583 -730 210 71 0 0 chr6 135093241 135093269 -47321973 + (CA)n Simple_repeat Simple_repeat 1 28 0 1518 270 164 20 chr6 135093269 135093572 -47321670 + L2 LINE L2 2583 2841 -472 5527 114 35 6 chr6 135093572 135094484 -47320758 + L1PA16 LINE L1 4952 5908 -258 2139 128 3 0 chr6 135094484 135094789 -47320453 + AluSg SINE Alu 1 306 -4 5527 114 35 6 chr6 135094789 135095047 -47320195 + L1PA16 LINE L1 5908 6157 -9 1518 270 164 20 chr6 135095047 135095318 -47319924 + L2 LINE L2 2841 3313 0 24 32 0 0 chr6 135096573 135096604 -47318638 + AT_rich Low_complexity Low_complexity 1 31 0 481 350 77 33 chr6 135098087 135098516 -47316726 - L3 LINE CR1 -2 1575 1128 323 243 40 0 chr6 135099150 135099224 -47316018 - L3 LINE CR1 -496 1081 1005 206 311 66 38 chr6 135100406 135100512 -47314730 - L2 LINE L2 -18 3254 3146 194 175 0 18 chr6 135100624 135100681 -47314561 + GA-rich Low_complexity Low_complexity 2 57 0 1226 146 4 43 chr6 135100683 135100916 -47314326 - MLT2D LTR ERVL -186 228 5 261 57 0 0 chr6 135101425 135101460 -47313782 + (CA)n Simple_repeat Simple_repeat 2 36 0 2153 138 45 20 chr6 135101464 135101819 -47313423 - THE1B LTR MaLR 0 364 1 1449 221 46 38 chr6 135102224 135102595 -47312647 + MLT1A2 LTR MaLR 1 374 0 249 329 74 22 chr6 135102819 135103050 -47312192 - L2 LINE L2 -217 3055 2813 191 316 13 40 chr6 135103816 135103892 -47311350 - L3b LINE CR1 -234 1349 1276 22 0 0 0 chr6 135105614 135105636 -47309606 + AT_rich Low_complexity Low_complexity 1 22 0 756 194 124 35 chr6 135106937 135107138 -47308104 + MER20 DNA MER1_type 1 219 0 351 0 0 0 chr6 135107360 135107399 -47307843 + (TA)n Simple_repeat Simple_repeat 1 39 0 1631 147 4 0 chr6 135108260 135108532 -47306710 + L1MA4 LINE L1 5533 5805 -495 213 159 32 48 chr6 135108544 135108607 -47306635 + (CATAT)n Simple_repeat Simple_repeat 3 64 0 2674 132 25 42 chr6 135108607 135108656 -47306586 + L1MA4 LINE L1 5782 5830 -470 2491 57 3 0 chr6 135108656 135108952 -47306290 + AluY SINE Alu 1 297 -14 2674 132 25 42 chr6 135108952 135109424 -47305818 + L1MA4 LINE L1 5830 6294 -6 2052 115 86 12 chr6 135109849 135110188 -47305054 + THE1B LTR MaLR 1 364 0 532 245 123 29 chr6 135110326 135110530 -47304712 - MLT1D LTR MaLR -5 500 278 1290 112 0 0 chr6 135110622 135110792 -47304450 - AluSq SINE Alu -10 303 134 2269 101 0 3 chr6 135110792 135111089 -47304153 - AluSg SINE Alu -14 296 1 386 267 58 25 chr6 135111090 135111210 -47304032 - MLT1D LTR MaLR -381 124 1 259 179 164 0 chr6 135111308 135111375 -47303867 + MER81 DNA DNA 34 111 -3 876 209 89 19 chr6 135112596 135112771 -47302471 - L1MDa LINE L1 -4127 2413 2252 1464 220 14 10 chr6 135112771 135113067 -47302175 - AluJb SINE Alu -15 297 1 876 209 89 19 chr6 135113067 135113216 -47302026 - L1MDa LINE L1 -4288 2252 2066 447 243 45 31 chr6 135113388 135113551 -47301691 + MIR SINE MIR 60 220 -42 1889 265 48 28 chr6 135113717 135114414 -47300828 + L2 LINE L2 2411 3120 -193 434 250 104 42 chr6 135114590 135114734 -47300508 + L2 LINE L2 3158 3310 -3 21 71 0 0 chr6 135115690 135115732 -47299510 + AT_rich Low_complexity Low_complexity 1 42 0 32 75 0 0 chr6 135117011 135117078 -47298164 + AT_rich Low_complexity Low_complexity 1 67 0 184 397 0 0 chr6 135118624 135118697 -47296545 - MIR SINE MIR -104 104 32 1120 65 5 27 chr6 135119033 135119111 -47296131 + (TTTC)n Simple_repeat Simple_repeat 1 256 0 1120 65 5 27 chr6 135119111 135119295 -47295947 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 185 316 0 18 chr6 135120316 135120373 -47294869 + MIR3 SINE MIR 120 175 -33 333 47 0 0 chr6 135121651 135121694 -47293548 + (TG)n Simple_repeat Simple_repeat 2 44 0 2132 175 78 0 chr6 135122356 135122751 -47292491 - MSTB LTR MaLR 0 426 1 3822 168 25 30 chr6 135122751 135123053 -47292189 - MSTB-int LTR MaLR 0 1651 1349 2295 81 0 20 chr6 135123053 135123351 -47291891 - AluY SINE Alu -19 292 1 3822 168 25 30 chr6 135123351 135123821 -47291421 - MSTB-int LTR MaLR -302 1349 883 2237 154 95 0 chr6 135123855 135124244 -47290998 - MSTB LTR MaLR 0 426 1 364 242 47 84 chr6 135125169 135125359 -47289883 - L1ME3A LINE L1 0 6170 5988 710 266 45 33 chr6 135125524 135125859 -47289383 - L1MC5 LINE L1 -430 7531 7193 436 241 68 39 chr6 135126380 135126592 -47288650 + MLT1J1 LTR MaLR 4 233 -217 636 204 7 35 chr6 135126619 135126761 -47288481 - MER58B DNA MER1_type -37 304 167 339 252 61 38 chr6 135126793 135126924 -47288318 + MLT1J2 LTR MaLR 258 391 -59 698 211 154 20 chr6 135126931 135127178 -47288064 - MLT1C LTR MaLR 0 467 188 681 220 9 52 chr6 135127344 135127572 -47287670 - MLT1C LTR MaLR -172 218 3 27 0 0 0 chr6 135128390 135128417 -47286825 + AT_rich Low_complexity Low_complexity 1 27 0 13216 90 20 2 chr6 135128417 135131075 -47284167 - L1PA7 LINE L1 -11 6458 3770 14457 118 44 30 chr6 135131081 135132322 -47282920 - L1PA7 LINE L1 -2777 3684 2462 2137 114 3 7 chr6 135132322 135132619 -47282623 + AluSg SINE Alu 1 296 -14 14457 118 44 30 chr6 135132619 135134899 -47280343 - L1PA7 LINE L1 -3999 2462 1 2220 106 0 0 chr6 135135850 135136142 -47279100 - AluSg SINE Alu -18 292 1 544 288 88 9 chr6 135136348 135136574 -47278668 + MER102b DNA MER1_type 88 331 -10 257 255 234 14 chr6 135137915 135138060 -47277182 + MER5A DNA MER1_type 11 187 -2 412 209 158 36 chr6 135138205 135138344 -47276898 + MER5B DNA MER1_type 22 177 -1 2139 114 3 10 chr6 135139045 135139344 -47275898 - AluSq SINE Alu -16 297 1 449 309 9 0 chr6 135140379 135140489 -47274753 - L2 LINE L2 -11 3302 3192 215 162 0 0 chr6 135141274 135141311 -47273931 + MER5C DNA MER1_type 288 324 0 238 235 39 0 chr6 135141341 135141392 -47273850 + MER5A DNA MER1_type 47 99 -90 1494 262 55 40 chr6 135144653 135145359 -47269883 - HAL1 LINE L1 -17 2490 1774 691 268 130 11 chr6 135145544 135145820 -47269422 + LTR16A LTR ERVL 128 436 -14 657 293 68 89 chr6 135146039 135146725 -47268517 - HAL1 LINE L1 -1810 697 26 492 252 71 13 chr6 135146756 135146911 -47268331 + L2 LINE L2 1945 2108 -1206 23 0 0 0 chr6 135147562 135147585 -47267657 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr6 135148261 135148304 -47266938 + AT_rich Low_complexity Low_complexity 1 43 0 286 297 29 43 chr6 135148649 135148787 -47266455 - L3 LINE CR1 -5 1572 1437 241 329 65 32 chr6 135151165 135151320 -47263922 + MIR3 SINE MIR 2 161 -47 247 318 51 49 chr6 135151366 135151564 -47263678 - MIR3 SINE MIR -51 211 14 283 289 183 0 chr6 135151809 135151913 -47263329 - MIR SINE MIR -105 157 35 2132 127 53 19 chr6 135153004 135153365 -47261877 - THE1C LTR MaLR -2 373 1 3274 245 43 41 chr6 135154238 135155837 -47259405 + L1ME LINE L1 3928 5524 -640 460 266 96 35 chr6 135156432 135156661 -47258581 + MIR SINE MIR 7 249 -13 12217 172 41 24 chr6 135157228 135157544 -47257698 - L1MA4 LINE L1 -6 6294 5985 1765 122 44 70 chr6 135157544 135157929 -47257313 + THE1C LTR MaLR 1 375 0 12217 172 41 24 chr6 135157929 135160816 -47254426 - L1MA4 LINE L1 -315 5985 3004 2188 75 44 3 chr6 135160816 135161109 -47254133 - AluY SINE Alu -6 305 1 12217 172 41 24 chr6 135161109 135161680 -47253562 - L1MA4 LINE L1 -3296 3004 2444 231 317 159 21 chr6 135161864 135162009 -47253233 + L3b LINE CR1 1407 1571 -12 1759 179 0 4 chr6 135162158 135162438 -47252804 + AluJo SINE Alu 1 279 -33 1427 267 54 39 chr6 135162924 135163439 -47251803 + MLT1L LTR MaLR 39 561 -54 727 268 54 61 chr6 135163439 135163719 -47251523 + Charlie2 DNA MER1_type 1 278 -2504 1050 236 98 21 chr6 135163739 135164303 -47250939 + Charlie2 DNA MER1_type 2213 2819 -43 385 250 46 74 chr6 135164518 135164734 -47250508 - HAL1 LINE L1 -2295 212 3 289 227 31 31 chr6 135164757 135164854 -47250388 - L1ME4a LINE L1 -238 5883 5787 669 303 26 17 chr6 135167108 135167339 -47247903 + HERV16 LTR ERVL 14 246 -4750 853 297 25 18 chr6 135167361 135167644 -47247598 + HERV16 LTR ERVL 826 1110 -3886 2329 66 3 3 chr6 135167892 135168178 -47247064 - AluY SINE Alu -25 286 1 246 330 10 10 chr6 135168985 135169108 -47246134 + CT-rich Low_complexity Low_complexity 2 203 0 315 288 0 0 chr6 135169459 135169525 -47245717 + L2 LINE L2 3201 3266 -6 22 56 0 0 chr6 135169994 135170030 -47245212 + AT_rich Low_complexity Low_complexity 1 36 0 793 207 6 24 chr6 135170449 135170618 -47244624 + MER45A DNA AcHobo 10 175 -3 469 239 120 7 chr6 135170962 135171104 -47244138 + L1ME4a LINE L1 5671 5828 -293 333 0 0 0 chr6 135171245 135171282 -47243960 + (TG)n Simple_repeat Simple_repeat 2 38 0 2308 102 0 3 chr6 135172548 135172852 -47242390 + AluSg SINE Alu 1 303 -7 447 68 0 0 chr6 135173224 135173283 -47241959 + (CA)n Simple_repeat Simple_repeat 2 60 0 539 264 9 28 chr6 135173587 135173777 -47241465 - MER5A DNA MER1_type 0 189 4 255 250 16 0 chr6 135174851 135174915 -47240327 + MLT1K LTR MaLR 514 578 -10 234 329 130 6 chr6 135175981 135176142 -47239100 - MIR SINE MIR -57 205 25 2345 61 0 29 chr6 135176764 135177076 -47238166 + AluY SINE Alu 1 303 -8 2418 220 99 82 chr6 135177307 135177920 -47237322 + MLT1E1 LTR MaLR 1 654 0 393 318 184 4 chr6 135177921 135178188 -47237054 + L2 LINE L2 2199 2513 -801 299 340 0 0 chr6 135178587 135178690 -47236552 + LTR67 LTR ERVL 408 510 -47 389 268 76 67 chr6 135178718 135178942 -47236300 + L2 LINE L2 2539 2764 -550 24 0 0 0 chr6 135178942 135178966 -47236276 + AT_rich Low_complexity Low_complexity 1 24 0 5159 118 32 1 chr6 135178966 135179819 -47235423 - L1MA3 LINE L1 0 6305 5427 1410 63 24 5 chr6 135179921 135180127 -47235115 + L1P LINE L1 4994 5203 -943 * 14463 149 32 43 chr6 135180124 135187307 -47227935 - L1M1 LINE L1 -494 7230 13 272 326 0 0 chr6 135187808 135187906 -47227336 - MIR SINE MIR -17 245 148 696 279 116 52 chr6 135187916 135188278 -47226964 - MLT1I LTR MaLR -6 403 19 204 346 158 0 chr6 135188301 135188428 -47226814 - MIR SINE MIR -110 152 6 5712 162 20 40 chr6 135188767 135190675 -47224567 - L1PA15 LINE L1 0 6165 4315 4617 242 30 26 chr6 135190670 135191151 -47224091 - L1PA13 LINE L1 -3828 2969 2492 * 2307 92 0 0 chr6 135191151 135191479 -47223763 + AluY SINE Alu 1 328 0 4617 242 30 26 chr6 135191479 135193581 -47221661 - L1PA13 LINE L1 -4305 2492 1 1972 134 13 7 chr6 135193697 135194002 -47221240 - AluSx SINE Alu -5 307 1 2118 118 60 17 chr6 135194798 135195147 -47220095 + THE1B LTR MaLR 1 364 0 2685 258 92 21 chr6 135196888 135198047 -47217195 - Charlie7 DNA MER1_type -303 2309 1069 2718 158 15 11 chr6 135198047 135198502 -47216740 - LTR32 LTR ERVL 0 471 15 228 234 78 0 chr6 135198501 135198565 -47216677 - Charlie7 DNA MER1_type -1538 1074 1006 * 978 264 108 56 chr6 135198565 135199225 -47216017 - Charlie7 DNA MER1_type -1569 1043 350 1216 117 34 24 chr6 135199271 135199477 -47215765 + Tigger2 DNA MER2_type 1 208 -2510 815 208 7 13 chr6 135199474 135199628 -47215614 + Tigger2 DNA MER2_type 2564 2716 -2 * 280 358 108 21 chr6 135199628 135199867 -47215375 - Charlie7 DNA MER1_type -2313 299 40 225 108 0 0 chr6 135200154 135200191 -47215051 + (TG)n Simple_repeat Simple_repeat 2 38 0 197 36 36 0 chr6 135201180 135201208 -47214034 + MIR SINE MIR 112 140 -122 964 256 140 27 chr6 135201230 135201672 -47213570 - MLT1J LTR MaLR -15 496 5 685 194 75 53 chr6 135201674 135201901 -47213341 - ORSL DNA AcHobo -41 234 3 40 49 0 0 chr6 135202365 135202426 -47212816 + AT_rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr6 135202436 135202467 -47212775 + AT_rich Low_complexity Low_complexity 1 31 0 25 83 0 0 chr6 135202659 135202719 -47212523 + AT_rich Low_complexity Low_complexity 1 60 0 6301 95 8 1 chr6 135203008 135203892 -47211350 + L1PA11 LINE L1 5285 6174 0 21 0 0 0 chr6 135204636 135204657 -47210585 + AT_rich Low_complexity Low_complexity 1 21 0 300 27 0 0 chr6 135205071 135205108 -47210134 + (GA)n Simple_repeat Simple_repeat 2 38 0 1769 166 0 3 chr6 135205409 135205713 -47209529 + AluJb SINE Alu 1 303 0 27941 54 6 1 chr6 135205824 135209354 -47205888 - L1PA4 LINE L1 -2596 3550 2 15054 38 5 1 chr6 135209352 135211951 -47203291 + L1PA4 LINE L1 3536 6149 -6 328 330 9 36 chr6 135212818 135212930 -47202312 + MIR SINE MIR 12 120 -142 848 161 0 29 chr6 135213827 135213964 -47201278 + FLAM_C SINE Alu 1 133 0 953 163 168 35 chr6 135214003 135214205 -47201037 + AluJb SINE Alu 1 229 -83 283 221 59 29 chr6 135214747 135214815 -47200427 + HAL1 LINE L1 4 73 -2434 297 128 0 0 chr6 135215338 135215385 -47199857 + (CA)n Simple_repeat Simple_repeat 2 48 0 450 0 0 0 chr6 135215453 135215503 -47199739 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 333 129 0 0 chr6 135215520 135215590 -47199652 + (TA)n Simple_repeat Simple_repeat 1 70 0 394 289 25 25 chr6 135215598 135215875 -47199367 + HAL1 LINE L1 1029 1305 -1202 413 280 22 36 chr6 135216069 135216294 -47198948 + HAL1 LINE L1 1558 1779 -728 494 232 0 9 chr6 135216297 135216409 -47198833 + L1MC4 LINE L1 7788 7898 -144 22 56 0 0 chr6 135216450 135216486 -47198756 + AT_rich Low_complexity Low_complexity 1 36 0 400 243 167 61 chr6 135216524 135216787 -47198455 + L2 LINE L2 3022 3312 -1 229 325 113 0 chr6 135217139 135217219 -47198023 + HAL1 LINE L1 1825 1913 -594 323 300 120 7 chr6 135217566 135217716 -47197526 + HAL1 LINE L1 2264 2430 -77 310 302 73 52 chr6 135218155 135218403 -47196839 - L2 LINE L2 -1317 1997 1745 2402 76 0 16 chr6 135219025 135219340 -47195902 - AluSg SINE Alu 0 310 1 1761 163 35 14 chr6 135219360 135219728 -47195514 - L1MA8 LINE L1 -10 6281 5906 204 273 18 0 chr6 135219959 135220014 -47195228 + L2 LINE L2 3256 3311 -2 1628 242 70 61 chr6 135220044 135220614 -47194628 - MLT1G LTR MaLR -9 581 7 371 162 88 0 chr6 135221166 135221234 -47194008 + AluS SINE Alu 1 74 -227 * 2958 148 17 21 chr6 135221209 135221728 -47193514 - Tigger3b DNA MER2_type -713 518 2 387 333 58 48 chr6 135221747 135222285 -47192957 - HERVL LTR ERVL -3829 1825 1283 362 208 26 26 chr6 135222423 135222500 -47192742 - L2 LINE L2 -8 3305 3229 28 0 0 0 chr6 135223004 135223032 -47192210 + AT_rich Low_complexity Low_complexity 1 28 0 1942 255 48 10 chr6 135223876 135224359 -47190883 - MLT1F LTR MaLR 0 542 42 581 266 47 117 chr6 135224381 135224723 -47190519 - MLT1F-int LTR MaLR -25 1346 1029 2003 144 0 0 chr6 135224863 135225197 -47190045 - AluSx SINE Alu 0 334 1 2012 182 22 10 chr6 135225276 135225683 -47189559 - L1 LINE L1 -2260 4948 4537 1014 194 107 18 chr6 135226502 135226838 -47188404 - L1 LINE L1 -2602 4606 4241 3451 88 11 39 chr6 135226849 135227224 -47188018 - L1PA13 LINE L1 -18 6145 5788 2156 127 0 0 chr6 135227224 135227508 -47187734 - AluSx SINE Alu -28 284 1 3451 88 11 39 chr6 135227508 135227669 -47187573 - L1PA13 LINE L1 -375 5788 5624 4699 240 42 27 chr6 135227671 135229874 -47185368 - L1 LINE L1 -3588 3620 1675 933 306 55 56 chr6 135230357 135230997 -47184245 - L1 LINE L1 -6365 844 1 244 218 77 51 chr6 135231096 135231174 -47184068 - HAL1 LINE L1 -2424 83 4 22 35 0 0 chr6 135232251 135232280 -47182962 + AT_rich Low_complexity Low_complexity 1 29 0 388 238 83 71 chr6 135232392 135232508 -47182734 - MIR SINE MIR -62 200 80 1219 192 39 147 chr6 135232508 135232972 -47182270 + MLT2D LTR ERVL 1 414 0 388 238 83 71 chr6 135232972 135233023 -47182219 - MIR SINE MIR -182 80 31 357 317 152 7 chr6 135234082 135234227 -47181015 - MIR3 SINE MIR -28 180 15 468 278 20 26 chr6 135235134 135235285 -47179957 + MIR SINE MIR 56 205 -57 22 0 0 0 chr6 135236765 135236787 -47178455 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 135236916 135236942 -47178300 + AT_rich Low_complexity Low_complexity 1 26 0 2781 3 0 10 chr6 135236991 135237300 -47177942 + AluYa5 SINE Alu 1 306 -5 385 279 49 54 chr6 135237308 135237512 -47177730 + L1MC4a LINE L1 2158 2360 -3786 1172 238 91 29 chr6 135237513 135238425 -47176817 + L1MC4a LINE L1 5589 6599 -1209 660 256 0 58 chr6 135238419 135238661 -47176581 + L1MC4 LINE L1 7621 7848 -194 * 324 216 274 0 chr6 135238670 135238772 -47176470 + L1MC4 LINE L1 7913 8042 0 2202 135 0 0 chr6 135239093 135239404 -47175838 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr6 135239495 135239516 -47175726 + AT_rich Low_complexity Low_complexity 1 21 0 189 147 0 0 chr6 135240467 135240501 -47174741 + (TG)n Simple_repeat Simple_repeat 2 35 0 520 245 141 21 chr6 135241005 135241197 -47174045 - MIR SINE MIR -26 236 22 24 32 0 0 chr6 135242092 135242123 -47173119 + AT_rich Low_complexity Low_complexity 1 31 0 29 47 0 0 chr6 135242186 135242229 -47173013 + AT_rich Low_complexity Low_complexity 1 43 0 827 235 47 67 chr6 135242453 135242836 -47172406 - LTR41 LTR ERVL -5 768 340 934 221 40 5 chr6 135242851 135243050 -47172192 - LTR41 LTR ERVL -567 206 1 763 252 68 26 chr6 135243204 135243438 -47171804 + MIR SINE MIR 5 248 -14 672 55 66 0 chr6 135245212 135245303 -47169939 - L1PA16 LINE L1 -9 6157 6061 2224 102 3 10 chr6 135245346 135245651 -47169591 + AluSx SINE Alu 1 303 -9 273 417 102 4 chr6 135249157 135249392 -47165850 - L2 LINE L2 -14 3258 3001 11244 84 8 4 chr6 135249758 135249772 -47165470 + L1P LINE L1 3068 3080 -3066 6906 59 8 6 chr6 135249772 135251172 -47164070 - L1PA7 LINE L1 -11 6143 4743 11244 84 8 4 chr6 135251172 135252753 -47162489 + L1P LINE L1 3080 4670 -1476 285 292 13 39 chr6 135253483 135253637 -47161605 - MER103 DNA DNA -3 163 14 268 204 0 19 chr6 135253869 135253923 -47161319 + L2 LINE L2 3261 3313 0 768 332 106 52 chr6 135254738 135255249 -47159993 + L2 LINE L2 1179 1758 -1556 204 40 0 0 chr6 135255249 135255274 -47159968 + (GGA)n Simple_repeat Simple_repeat 1 25 0 768 332 106 52 chr6 135255274 135255639 -47159603 + L2 LINE L2 1758 2102 -1212 1211 259 32 32 chr6 135256414 135256784 -47158458 - MLT1A2 LTR MaLR -4 370 1 782 295 90 63 chr6 135256784 135257262 -47157980 + L2 LINE L2 2316 2806 -508 210 71 0 0 chr6 135257288 135257316 -47157926 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 2067 116 0 3 chr6 135257316 135257600 -47157642 - AluSx SINE Alu -29 283 1 286 268 146 34 chr6 135257894 135258099 -47157143 - L2 LINE L2 -858 2456 2229 309 296 126 47 chr6 135258192 135258493 -47156749 - L2 LINE L2 -1291 2023 1699 406 128 37 49 chr6 135259889 135260053 -47155189 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 222 111 79 0 chr6 135260071 135260134 -47155108 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 1038 180 14 36 chr6 135260324 135260546 -47154696 + AluJo SINE Alu 87 303 -9 1541 167 46 18 chr6 135260693 135260975 -47154267 - AluJo SINE Alu -22 290 1 348 311 7 40 chr6 135261028 135261179 -47154063 + Zaphod DNA AcHobo 10 155 -3876 4742 214 50 35 chr6 135261232 135262504 -47152738 + Charlie1 DNA MER1_type 586 1877 -884 2204 185 69 11 chr6 135262541 135263061 -47152181 + Charlie1 DNA MER1_type 2080 2629 -132 1701 234 38 72 chr6 135263081 135263633 -47151609 + Zaphod DNA AcHobo 120 652 -3379 1535 229 209 5 chr6 135263641 135264264 -47150978 + Zaphod DNA AcHobo 3282 4031 0 918 288 79 48 chr6 135265689 135266193 -47149049 - MLT1H1 LTR MaLR -8 547 28 1501 237 28 11 chr6 135266508 135266867 -47148375 - MLT1A1 LTR MaLR 0 365 1 828 229 0 12 chr6 135266958 135267124 -47148118 - FAM SINE Alu -8 167 4 321 236 18 36 chr6 135267821 135267931 -47147311 + CT-rich Low_complexity Low_complexity 1 108 0 301 314 172 36 chr6 135267995 135268420 -47146822 - L2 LINE L2 -78 3235 2739 24 0 0 0 chr6 135268610 135268634 -47146608 + AT_rich Low_complexity Low_complexity 1 24 0 316 281 237 0 chr6 135270097 135270211 -47145031 + MIR SINE MIR 100 240 -22 282 351 27 0 chr6 135270308 135270419 -47144823 - LTR16C LTR ERVL -53 438 325 479 262 66 49 chr6 135270739 135270922 -47144320 - L1ME1 LINE L1 -9 6157 5972 3628 227 48 72 chr6 135270927 135271850 -47143392 - L1ME1 LINE L1 -744 5402 4458 1788 123 68 46 chr6 135271850 135272217 -47143025 - THE1C LTR MaLR 0 375 1 3628 227 48 72 chr6 135272217 135272505 -47142737 - L1ME1 LINE L1 -1688 4458 4232 2136 81 0 7 chr6 135272505 135272813 -47142429 + AluSq SINE Alu 1 306 0 3628 227 48 72 chr6 135272813 135273117 -47142125 - L1ME1 LINE L1 -1914 4232 3922 751 290 41 16 chr6 135273257 135273623 -47141619 - L1MC4a LINE L1 -1759 6049 5675 2264 117 0 0 chr6 135274429 135274736 -47140506 + AluSc SINE Alu 1 307 -2 23 54 0 0 chr6 135275257 135275294 -47139948 + AT_rich Low_complexity Low_complexity 1 37 0 715 309 34 17 chr6 135275374 135275610 -47139632 + MIR SINE MIR 11 250 -12 249 300 0 0 chr6 135275694 135275764 -47139478 + (TA)n Simple_repeat Simple_repeat 1 70 0 2138 127 0 0 chr6 135277138 135277445 -47137797 + AluSx SINE Alu 1 307 -5 32 26 0 0 chr6 135277931 135277970 -47137272 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr6 135278131 135278171 -47137071 + AT_rich Low_complexity Low_complexity 1 40 0 329 367 7 27 chr6 135278604 135278754 -47136488 + L2 LINE L2 2914 3060 -212 726 87 0 0 chr6 135279236 135279340 -47135902 - L1PA11 LINE L1 -2 6172 6069 408 380 18 13 chr6 135280234 135280458 -47134784 - MLT1K LTR MaLR -219 369 145 3001 125 6 20 chr6 135281667 135282470 -47132772 + MER4D LTR ERV1 1 779 0 29 0 0 0 chr6 135282904 135282933 -47132309 + AT_rich Low_complexity Low_complexity 1 29 0 501 221 177 76 chr6 135283944 135284261 -47130981 - MLT1H LTR MaLR -129 420 72 351 260 75 1 chr6 135284321 135284452 -47130790 - L1M1 LINE L1 -329 5792 5667 258 253 159 44 chr6 135284820 135285002 -47130240 - L1MC/D LINE L1 -1960 5831 5629 598 295 76 61 chr6 135285223 135285843 -47129399 - L1MC/D LINE L1 -1468 4661 4019 2843 10 0 0 chr6 135285843 135286154 -47129088 + AluYa5 SINE Alu 1 311 0 598 295 76 61 chr6 135286154 135286534 -47128708 - L1MC/D LINE L1 -2110 4019 3646 521 286 32 40 chr6 135286668 135286920 -47128322 - L1MC/D LINE L1 -4880 1239 990 645 247 13 0 chr6 135286976 135287130 -47128112 + L1MD3 LINE L1 7825 7980 -15 31 44 0 0 chr6 135287292 135287337 -47127905 + AT_rich Low_complexity Low_complexity 1 45 0 500 239 87 22 chr6 135287528 135287754 -47127488 - L1MEc LINE L1 -4521 3092 2816 5018 171 14 33 chr6 135287835 135289347 -47125895 - L1MA6 LINE L1 -5 6295 4802 731 207 64 35 chr6 135290070 135290273 -47124969 - MER3 DNA MER1_type 0 209 1 920 258 19 0 chr6 135290301 135290514 -47124728 + MLT1D LTR MaLR 1 217 -288 2391 128 67 33 chr6 135290515 135290945 -47124297 + MER65A LTR ERV1 1 445 0 3866 210 48 71 chr6 135291030 135291833 -47123409 + MER65A-int LTR ERV1 83 903 -3968 2006 115 0 7 chr6 135291833 135292112 -47123130 + AluSc SINE Alu 1 277 -32 257 0 0 29 chr6 135292114 135292148 -47123094 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3866 210 48 71 chr6 135292148 135292601 -47122641 + MER65A-int LTR ERV1 904 1313 -3558 727 205 77 48 chr6 135292615 135293120 -47122122 + MER65A-int LTR ERV1 1720 3482 -3116 254 216 0 0 chr6 135293263 135293314 -47121928 + MER65A-int LTR ERV1 2429 2479 -4279 790 171 23 97 chr6 135293336 135293594 -47121648 + MER65A-int LTR ERV1 3492 3730 -2868 1187 182 99 107 chr6 135293673 135294604 -47120638 + MER65A-int LTR ERV1 3730 4692 -1639 44469 36 3 1 chr6 135294604 135300748 -47114494 + L1PA3 LINE L1 2 6152 -3 1419 205 100 18 chr6 135300757 135301157 -47114085 + MER65A-int LTR ERV1 3380 3812 -1124 1806 267 60 2 chr6 135301315 135301749 -47113493 + MER65A-int LTR ERV1 3604 4062 -809 * 1846 216 31 38 chr6 135301744 135302222 -47113020 + MER65A-int LTR ERV1 4397 4871 0 1715 126 66 148 chr6 135302222 135302281 -47112961 + MER65A LTR ERV1 1 63 -382 1598 191 7 7 chr6 135302281 135302589 -47112653 + AluJo SINE Alu 2 309 0 1715 126 66 148 chr6 135302589 135302856 -47112386 + MER65A LTR ERV1 63 278 -167 1691 148 17 28 chr6 135302856 135303146 -47112096 + AluSx SINE Alu 1 287 -25 1715 126 66 148 chr6 135303146 135303302 -47111940 + MER65A LTR ERV1 278 445 0 1181 202 124 0 chr6 135303302 135303560 -47111682 + MLT1D LTR MaLR 216 505 0 502 252 17 0 chr6 135303790 135303909 -47111333 + MER63 DNA MER1_type 662 782 -278 340 274 65 65 chr6 135303990 135304080 -47111162 - L2 LINE L2 -256 3057 2965 2128 129 3 0 chr6 135304080 135304383 -47110859 - AluSx SINE Alu -8 304 1 340 274 65 65 chr6 135304383 135304445 -47110797 - L2 LINE L2 -347 2966 2905 1944 182 3 24 chr6 135304480 135304534 -47110708 - MLT1A1 LTR MaLR 0 365 311 2289 155 35 30 chr6 135304534 135304960 -47110282 - MSTC LTR MaLR 0 428 1 1944 182 3 24 chr6 135304960 135305274 -47109968 - MLT1A1 LTR MaLR -54 311 5 4121 284 131 28 chr6 135305378 135307345 -47107897 - L2 LINE L2 -503 2811 642 658 238 50 11 chr6 135307353 135307534 -47107708 + MER5A DNA MER1_type 1 188 -1 252 233 17 0 chr6 135308843 135308903 -47106339 + CT-rich Low_complexity Low_complexity 2 62 0 257 310 133 18 chr6 135310558 135310671 -47104571 + L2 LINE L2 2933 3058 -214 1992 157 64 37 chr6 135311402 135311937 -47103305 - MLT2A2 LTR ERVL -11 543 1 410 260 89 32 chr6 135312075 135312198 -47103044 - L2 LINE L2 -5 3267 3138 266 170 21 0 chr6 135312980 135313027 -47102215 + L1MEd LINE L1 563 610 -5509 510 191 57 0 chr6 135313452 135313557 -47101685 - L1MD3 LINE L1 -13 7982 7872 23 0 0 0 chr6 135313602 135313625 -47101617 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr6 135313745 135313776 -47101466 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr6 135313859 135313888 -47101354 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 135314137 135314158 -47101084 + AT_rich Low_complexity Low_complexity 1 21 0 488 103 64 0 chr6 135314653 135314731 -47100511 - THE1C LTR MaLR 0 375 293 * 630 134 142 22 chr6 135314717 135314851 -47100391 - THE1C LTR MaLR -225 150 1 639 100 0 0 chr6 135314882 135314972 -47100270 + AluSp/q SINE Alu 212 301 -12 351 220 20 50 chr6 135315290 135315390 -47099852 - L1MD3 LINE L1 -30 7965 7869 2976 202 36 40 chr6 135317174 135317854 -47097388 - L1MD2 LINE L1 -13 6346 5665 707 193 17 91 chr6 135317854 135318030 -47097212 - FRAM SINE Alu -2 164 2 2976 202 36 40 chr6 135318030 135318237 -47097005 - L1MD2 LINE L1 -694 5665 5408 1647 205 28 11 chr6 135318237 135318593 -47096649 - MLT1A1 LTR MaLR 0 365 4 2976 202 36 40 chr6 135318593 135318642 -47096600 - L1MD2 LINE L1 -951 5408 5360 219 36 0 0 chr6 135319151 135319179 -47096063 + (TG)n Simple_repeat Simple_repeat 2 29 0 225 216 78 0 chr6 135319606 135319657 -47095585 + MIR SINE MIR 83 137 -125 354 179 119 0 chr6 135319694 135319778 -47095464 - MER95 LTR ERV -329 102 9 650 236 92 6 chr6 135319943 135320117 -47095125 - MER5A DNA MER1_type 0 189 1 754 187 58 23 chr6 135320138 135320309 -47094933 + MER58A DNA MER1_type 48 224 0 551 279 102 62 chr6 135320611 135322065 -47093177 - L1MEd LINE L1 -3965 2345 784 373 58 0 231 chr6 135322442 135322546 -47092696 + MADE1 DNA Mariner 1 80 0 509 217 38 0 chr6 135322855 135322961 -47092281 - MER81 DNA DNA 0 114 5 23 33 0 0 chr6 135323641 135323671 -47091571 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr6 135323751 135323783 -47091459 + AT_rich Low_complexity Low_complexity 1 32 0 331 277 19 77 chr6 135324289 135324444 -47090798 + L1ME3A LINE L1 5901 6046 -124 11125 227 78 18 chr6 135324530 135325612 -47089630 - L1P4 LINE L1 -597 7007 5992 2200 117 0 0 chr6 135325612 135325912 -47089330 - AluSg SINE Alu -10 300 1 11125 227 78 18 chr6 135325912 135329290 -47085952 - L1P4 LINE L1 -1612 5992 2214 2108 99 20 0 chr6 135329297 135329600 -47085642 - AluY SINE Alu -2 309 1 283 309 32 0 chr6 135329841 135329935 -47085307 - L1P4 LINE L1 -5398 2183 2087 550 351 78 38 chr6 135330035 135330621 -47084621 - L1P4 LINE L1 -6177 1397 788 770 232 239 18 chr6 135331251 135331527 -47083715 + MER102b DNA MER1_type 2 338 -3 301 252 36 36 chr6 135332882 135332993 -47082249 - MIR SINE MIR -56 206 96 1853 161 137 11 chr6 135333276 135333656 -47081586 - MSTA LTR MaLR 0 428 1 1447 211 115 3 chr6 135334731 135335087 -47080155 - MSTD LTR MaLR 0 396 1 47 15 0 15 chr6 135335163 135335201 -47080041 + AT_rich Low_complexity Low_complexity 1 39 -25 646 192 0 0 chr6 135335201 135335321 -47079921 - L1PB3 LINE L1 -3 6151 6032 47 15 0 15 chr6 135335321 135335347 -47079895 + AT_rich Low_complexity Low_complexity 39 64 0 9629 168 22 17 chr6 135336528 135336656 -47078586 - L1PB1 LINE L1 0 6151 6025 1970 81 4 4 chr6 135336656 135336914 -47078328 - AluY SINE Alu -18 293 36 9629 168 22 17 chr6 135336914 135338752 -47076490 - L1PB1 LINE L1 -126 6025 4163 2237 82 3 47 chr6 135338752 135339071 -47076171 - AluSx SINE Alu -6 306 2 9629 168 22 17 chr6 135339071 135340182 -47075060 - L1PB1 LINE L1 -1988 4163 3059 717 258 197 43 chr6 135341444 135341947 -47073295 - MLT1H1 LTR MaLR 0 555 1 23 0 0 0 chr6 135342187 135342210 -47073032 + AT_rich Low_complexity Low_complexity 1 23 0 299 266 147 40 chr6 135342853 135343030 -47072212 - L3 LINE CR1 -175 1402 1207 232 255 20 0 chr6 135343055 135343106 -47072136 - L2 LINE L2 -2 3270 3219 * 853 308 128 10 chr6 135343105 135343532 -47071710 - L2 LINE L2 -278 3035 2552 23 54 0 0 chr6 135347291 135347328 -47067914 + AT_rich Low_complexity Low_complexity 1 37 0 188 367 101 0 chr6 135348679 135348788 -47066454 - L2 LINE L2 -2 3311 3192 1572 164 34 23 chr6 135348878 135349222 -47066020 + MER31A LTR ERV1 1 481 -4 916 247 10 92 chr6 135349303 135349595 -47065647 + Zaphod DNA AcHobo 1 268 -3763 7253 195 31 17 chr6 135349597 135349967 -47065275 + L1PA14 LINE L1 1209 1572 -5225 1768 92 57 64 chr6 135349967 135350249 -47064993 + AluSx SINE Alu 11 290 -22 7253 195 31 17 chr6 135350249 135352283 -47062959 + L1PA14 LINE L1 1572 3665 -3132 3615 161 28 4 chr6 135352280 135353462 -47061780 + L1PA14 LINE L1 5290 6495 -317 * 1889 159 38 24 chr6 135353551 135353921 -47061321 + THE1C LTR MaLR 1 375 0 24 67 0 0 chr6 135354970 135355015 -47060227 + AT_rich Low_complexity Low_complexity 1 45 0 306 382 66 7 chr6 135356794 135356946 -47058296 + L2 LINE L2 3112 3272 0 180 0 0 0 chr6 135357664 135357684 -47057558 + (TG)n Simple_repeat Simple_repeat 1 20 0 225 277 71 0 chr6 135357789 135357860 -47057382 - MIR SINE MIR -64 144 66 626 317 73 27 chr6 135358063 135358322 -47056920 + L2 LINE L2 2435 2705 -609 20085 161 43 14 chr6 135358331 135365671 -47049571 - L1MA2 LINE L1 0 7723 17 344 385 34 34 chr6 135365747 135366012 -47049230 + L2 LINE L2 2809 3073 -199 461 305 16 0 chr6 135366049 135366177 -47049065 - MER94 DNA DNA -4 130 1 419 310 21 14 chr6 135366220 135366362 -47048880 + L2 LINE L2 3162 3304 -9 1118 167 14 42 chr6 135366399 135366615 -47048627 + MER2 DNA MER2_type 1 210 -135 23 0 0 0 chr6 135366629 135366652 -47048590 + AT_rich Low_complexity Low_complexity 1 23 0 4018 125 19 0 chr6 135366661 135367285 -47047957 - L1PA16 LINE L1 -2 6164 5529 301 82 0 0 chr6 135367590 135367639 -47047603 + L1MA9 LINE L1 6257 6305 -7 731 234 116 6 chr6 135367703 135368476 -47046766 - L1ME3 LINE L1 -6 6156 5238 1223 275 117 22 chr6 135368524 135369533 -47045709 - L1MCb LINE L1 -4929 1494 813 490 300 50 57 chr6 135369626 135370077 -47045165 - L1MCb LINE L1 -5690 732 265 233 197 26 26 chr6 135370223 135370375 -47044867 + CT-rich Low_complexity Low_complexity 1 152 0 2093 143 105 37 chr6 135370378 135370834 -47044408 - L1MB8 LINE L1 -7 6171 5685 8564 133 48 55 chr6 135370836 135372411 -47042831 + Tigger1 DNA MER2_type 1 1564 -854 10632 206 46 53 chr6 135372413 135374577 -47040665 - L1M2 LINE L1 -541 6780 4601 2230 112 0 0 chr6 135374577 135374873 -47040369 + AluSg SINE Alu 1 296 -14 10632 206 46 53 chr6 135374873 135374931 -47040311 - L1M2 LINE L1 -2720 4601 4544 5951 102 13 3 chr6 135374931 135376077 -47039165 - L1PA11 LINE L1 -5 6169 5014 10632 206 46 53 chr6 135376077 135376211 -47039031 - L1M2 LINE L1 -2777 4544 4410 2553 118 3 3 chr6 135376211 135376575 -47038667 - THE1B LTR MaLR 0 364 1 10632 206 46 53 chr6 135376575 135379814 -47035428 - L1M2 LINE L1 -2911 4410 1223 387 73 0 0 chr6 135379859 135379914 -47035328 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 206 146 24 24 chr6 135380016 135380057 -47035185 + CT-rich Low_complexity Low_complexity 3 43 0 961 228 5 5 chr6 135380057 135380250 -47034992 - AluJb SINE Alu -118 194 2 1130 259 61 57 chr6 135380255 135380849 -47034393 - L1M4c LINE L1 -4732 2227 1632 1123 206 31 0 chr6 135380852 135381080 -47034162 - L1M4c LINE L1 -6613 246 12 4278 230 54 9 chr6 135381116 135383073 -47032169 + L1M2 LINE L1 2167 4209 -2639 35 41 0 0 chr6 135383351 135383400 -47031842 + AT_rich Low_complexity Low_complexity 1 49 0 200 349 0 0 chr6 135383425 135383488 -47031754 - MIR SINE MIR -67 141 79 2112 128 73 14 chr6 135383519 135383863 -47031379 + THE1B LTR MaLR 1 364 0 11580 88 11 2 chr6 135383863 135385429 -47029813 + THE1B-int LTR MaLR 1 1580 0 1879 130 140 9 chr6 135385429 135385751 -47029491 + THE1B LTR MaLR 1 364 0 2470 187 111 12 chr6 135385808 135386607 -47028635 + L1MD3 LINE L1 5221 5812 -366 2816 35 0 6 chr6 135386706 135387050 -47028192 + L1PA5 LINE L1 5804 6145 -9 794 306 134 33 chr6 135387357 135387520 -47027722 - L2 LINE L2 0 3313 3168 2000 212 97 9 chr6 135387520 135387983 -47027259 - MLT1D LTR MaLR -1 504 1 794 306 134 33 chr6 135387983 135388304 -47026938 - L2 LINE L2 -145 3168 2784 21 0 0 0 chr6 135388847 135388868 -47026374 + AT_rich Low_complexity Low_complexity 1 21 0 189 214 0 0 chr6 135390058 135390100 -47025142 + (TG)n Simple_repeat Simple_repeat 1 42 0 1102 209 28 34 chr6 135390250 135390570 -47024672 - MLT1B LTR MaLR -2 388 1 1040 16 0 16 chr6 135391802 135391927 -47023315 - L1PA3 LINE L1 0 6155 6033 1403 309 76 75 chr6 135392599 135393947 -47021295 - MER110-int LTR ERV1 0 4647 3299 531 246 62 110 chr6 135394072 135394409 -47020833 - MER110-int LTR ERV1 -1444 3203 2883 785 224 110 8 chr6 135394469 135394724 -47020518 + L1M4 LINE L1 4754 5034 -1112 410 288 39 65 chr6 135394725 135395069 -47020173 - MER110-int LTR ERV1 -2543 2104 1709 21 0 0 0 chr6 135395207 135395228 -47020014 + AT_rich Low_complexity Low_complexity 1 21 0 354 286 49 36 chr6 135397123 135397392 -47017850 - L1ME LINE L1 -319 5802 5424 2200 151 69 10 chr6 135397392 135397796 -47017446 + MSTA LTR MaLR 1 428 0 354 286 49 36 chr6 135397796 135397869 -47017373 - L1ME LINE L1 -697 5424 5353 1884 79 112 0 chr6 135398763 135399041 -47016201 + AluSg SINE Alu 1 309 -1 2306 105 0 3 chr6 135399877 135400183 -47015059 + AluSg SINE Alu 1 305 -5 274 368 83 51 chr6 135402017 135402368 -47012874 - L3b LINE CR1 -4 1579 1218 218 242 65 16 chr6 135402873 135402935 -47012307 - MIR SINE MIR -106 156 92 21 36 0 0 chr6 135403886 135403914 -47011328 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr6 135407698 135407732 -47007510 + AT_rich Low_complexity Low_complexity 1 34 0 186 340 107 30 chr6 135407917 135408114 -47007128 + L3 LINE CR1 1020 1231 -346 6354 86 9 0 chr6 135408674 135409557 -47005685 - L1PB1 LINE L1 -7 6144 5254 545 239 0 0 chr6 135409564 135409681 -47005561 + L1PB1 LINE L1 5135 5251 -895 1485 240 91 16 chr6 135410287 135410804 -47004438 - L1MC5 LINE L1 -291 7670 7115 523 326 64 59 chr6 135410835 135411580 -47003662 - HAL1b LINE L1 -511 837 89 204 224 30 15 chr6 135412856 135412923 -47002319 + (TA)n Simple_repeat Simple_repeat 1 68 0 21 36 0 0 chr6 135414050 135414078 -47001164 + AT_rich Low_complexity Low_complexity 1 28 0 406 307 114 12 chr6 135414300 135414466 -47000776 - MER5A DNA MER1_type 0 189 7 209 323 0 0 chr6 135415225 135415287 -46999955 - MER5A DNA MER1_type -3 186 125 735 236 0 0 chr6 135415316 135415460 -46999782 + MER5A DNA MER1_type 2 145 -44 306 265 22 66 chr6 135415349 135415485 -46999757 - MER5A DNA MER1_type -23 166 37 * 252 322 107 0 chr6 135416700 135416821 -46998421 + L2 LINE L2 3180 3313 0 403 147 13 0 chr6 135417261 135417336 -46997906 - MER116 DNA Mariner -4 76 1 186 353 115 16 chr6 135417613 135417735 -46997507 - MER5A DNA MER1_type -2 187 54 * 279 284 88 40 chr6 135417631 135417779 -46997463 + MER5A DNA MER1_type 35 189 0 * 339 352 77 22 chr6 135417779 135417926 -46997316 - MIR3 SINE MIR -43 165 9 268 341 7 7 chr6 135418390 135418525 -46996717 + L1M4 LINE L1 3684 3818 -2328 237 216 129 52 chr6 135418600 135418716 -46996526 + L1MC3 LINE L1 350 474 -5922 2261 244 60 45 chr6 135419428 135420496 -46994746 + L1MC3 LINE L1 782 1826 -4580 * 11612 224 14 16 chr6 135420490 135423240 -46992002 + L1P LINE L1 1524 4267 -1879 1602 307 62 6 chr6 135423361 135423860 -46991382 + L2 LINE L2 1035 1561 -1753 713 201 94 30 chr6 135425885 135426197 -46989045 - MER31B LTR ERV1 0 543 1 345 314 86 0 chr6 135426197 135426302 -46988940 + L2 LINE L2 3150 3263 -9 1281 144 19 8 chr6 135426352 135426663 -46988579 + THE1B LTR MaLR 1 364 0 441 254 115 12 chr6 135426757 135426922 -46988320 + MIR SINE MIR 20 201 -61 281 245 0 0 chr6 135427108 135427161 -46988081 + MIR3 SINE MIR 124 176 -32 469 226 29 0 chr6 135427438 135427540 -46987702 - L1MA9 LINE L1 -38 6274 6170 263 155 17 0 chr6 135427768 135427805 -46987437 + CT-rich Low_complexity Low_complexity 2 42 -18 249 33 0 0 chr6 135427805 135427835 -46987407 + (CA)n Simple_repeat Simple_repeat 1 30 0 263 155 17 0 chr6 135427835 135427855 -46987387 + CT-rich Low_complexity Low_complexity 42 60 0 21 0 0 0 chr6 135427970 135427991 -46987251 + AT_rich Low_complexity Low_complexity 1 21 0 1460 271 23 60 chr6 135428824 135429476 -46985766 + L1MC3 LINE L1 3639 4266 -2140 1888 168 69 30 chr6 135429477 135430016 -46985226 + MLT2A2 LTR ERVL 1 554 0 2595 248 39 36 chr6 135430016 135430939 -46984303 + L1MC3 LINE L1 4263 5188 -1218 317 208 13 0 chr6 135431034 135431111 -46984131 + L1MC3 LINE L1 5219 5296 -1110 * 2727 205 45 26 chr6 135431098 135431801 -46983441 + L1MC3 LINE L1 6197 6913 -1132 427 149 0 0 chr6 135431797 135431871 -46983371 - L1 LINE L1 -1121 5025 4952 * 3343 189 9 13 chr6 135431871 135432566 -46982676 + L1P LINE L1 4236 4927 -1219 3721 176 77 56 chr6 135432613 135432759 -46982483 + L1MC3 LINE L1 7119 7260 -785 231 88 0 0 chr6 135432759 135432793 -46982449 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3721 176 77 56 chr6 135432793 135433275 -46981967 + L1MC3 LINE L1 7260 7774 -271 2220 108 3 3 chr6 135433275 135433582 -46981660 + AluSp SINE Alu 1 307 -6 3721 176 77 56 chr6 135433582 135433859 -46981383 + L1MC3 LINE L1 7774 8044 -1 1790 139 54 0 chr6 135433950 135434230 -46981012 - AluSx SINE Alu -17 295 1 1616 179 41 27 chr6 135434259 135434627 -46980615 + THE1C LTR MaLR 3 375 0 9650 130 7 35 chr6 135434631 135436252 -46978990 + THE1C-int LTR MaLR 5 1580 0 1581 154 93 35 chr6 135436252 135436595 -46978647 + THE1C LTR MaLR 1 363 -12 1223 234 114 15 chr6 135436613 135437007 -46978235 + L1ME3A LINE L1 5660 6092 -78 228 277 64 0 chr6 135437163 135437257 -46977985 - L1MC5 LINE L1 -54 7907 7808 500 261 6 12 chr6 135437275 135437332 -46977910 - L1MA10 LINE L1 -2 6332 6276 2662 233 39 17 chr6 135437332 135438026 -46977216 - L1ME1 LINE L1 -50 6116 5408 326 247 10 10 chr6 135438028 135438125 -46977117 + L1M LINE L1 5315 5411 -831 * 1774 208 0 19 chr6 135438122 135438493 -46976749 - L1MC3 LINE L1 -1858 5927 5564 1594 163 11 7 chr6 135438587 135438857 -46976385 + AluSx SINE Alu 1 271 -41 261 0 0 0 chr6 135438858 135438887 -46976355 + (TC)n Simple_repeat Simple_repeat 2 30 0 306 166 57 19 chr6 135438890 135439161 -46976081 + (TA)n Simple_repeat Simple_repeat 1 281 0 255 177 32 0 chr6 135439224 135439286 -46975956 + L1MC4 LINE L1 6640 6703 -1339 * 792 192 7 7 chr6 135439279 135439425 -46975817 + L1 LINE L1 4005 4150 -1996 27 92 0 0 chr6 135440196 135440272 -46974970 + AT_rich Low_complexity Low_complexity 1 76 0 299 0 0 0 chr6 135440387 135440420 -46974822 - L1M1 LINE L1 -562 5740 5708 * 675 126 108 21 chr6 135440411 135440553 -46974689 + L1MA1 LINE L1 6141 6300 -3 370 329 114 9 chr6 135440706 135440925 -46974317 + MIR SINE MIR 20 261 -1 469 246 65 80 chr6 135441002 135441201 -46974041 - MIR3 SINE MIR -12 196 1 376 275 116 14 chr6 135442646 135442784 -46972458 - MIR SINE MIR -61 201 50 217 296 56 88 chr6 135442932 135443182 -46972060 + L2 LINE L2 1750 1991 -1323 239 323 110 45 chr6 135443366 135443521 -46971721 + MLT1K LTR MaLR 196 360 -228 243 61 0 0 chr6 135443537 135443570 -46971672 + (TC)n Simple_repeat Simple_repeat 2 34 0 456 377 33 21 chr6 135444174 135444593 -46970649 + L2 LINE L2 1972 2395 -919 799 222 49 63 chr6 135446417 135446471 -46968771 - L1ME LINE L1 -505 5728 5675 1511 238 31 18 chr6 135446471 135446862 -46968380 - MSTD LTR MaLR 0 396 1 799 222 49 63 chr6 135446862 135447154 -46968088 - L1ME LINE L1 -558 5675 5387 21 0 0 0 chr6 135447473 135447494 -46967748 + AT_rich Low_complexity Low_complexity 1 21 0 2303 271 133 54 chr6 135447512 135449459 -46965783 - L1ME LINE L1 -999 5216 3117 350 236 47 14 chr6 135449489 135449637 -46965605 - L1ME LINE L1 -4615 1781 1629 711 148 33 16 chr6 135449648 135449770 -46965472 + L1MA3 LINE L1 10 133 -7432 * 10445 130 21 72 chr6 135449767 135451704 -46963538 + L1MA3 LINE L1 1099 2936 -4629 4916 147 3 21 chr6 135451704 135452586 -46962656 + L1MA3 LINE L1 6859 7724 0 1257 193 15 82 chr6 135452605 135453009 -46962233 - L1MA7 LINE L1 0 6291 5915 2222 200 68 70 chr6 135453164 135453562 -46961680 - L1MA7 LINE L1 0 6358 5961 2529 49 3 0 chr6 135453562 135453866 -46961376 - AluY SINE Alu -6 305 1 2222 200 68 70 chr6 135453866 135454357 -46960885 - L1MA7 LINE L1 -397 5961 5492 4432 93 38 18 chr6 135454519 135455177 -46960065 - L1PA11 LINE L1 -57 6117 5447 806 112 0 0 chr6 135455169 135455285 -46959957 - L1MB1 LINE L1 -25 6143 6028 * 285 216 93 65 chr6 135455631 135455770 -46959472 - L1MA7 LINE L1 -1232 5118 4976 1323 195 63 32 chr6 135455770 135456118 -46959124 - L1MA7 LINE L1 -1332 5018 4660 * 6566 192 30 23 chr6 135456115 135457561 -46957681 - L1 LINE L1 -1499 4851 3393 2043 129 7 0 chr6 135457561 135457870 -46957372 - AluSq SINE Alu -2 311 1 6566 192 30 23 chr6 135457870 135458005 -46957237 - L1 LINE L1 -2957 3393 3260 21 0 0 0 chr6 135458070 135458091 -46957151 + AT_rich Low_complexity Low_complexity 1 21 0 4801 209 40 24 chr6 135458198 135459329 -46955913 - L1MA7 LINE L1 -1806 4544 3388 2310 104 7 0 chr6 135459329 135459638 -46955604 - AluSq SINE Alu -2 311 1 4801 209 40 24 chr6 135459638 135459796 -46955446 - L1MA7 LINE L1 -2962 3388 3234 3792 133 20 12 chr6 135459826 135460490 -46954752 - L1MA5A LINE L1 -8 6289 5621 4748 194 23 14 chr6 135460491 135461591 -46953651 - L1MA5A LINE L1 -844 5302 4194 334 208 0 13 chr6 135461642 135461719 -46953523 - L1M3 LINE L1 -471 5709 5634 704 283 0 0 chr6 135461735 135461887 -46953355 - L1MA7 LINE L1 -5754 527 376 314 294 28 49 chr6 135461882 135462025 -46953217 - HAL1b LINE L1 -808 540 401 * 215 171 24 0 chr6 135462108 135462149 -46953093 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 856 292 48 13 chr6 135463000 135463373 -46951869 + L1ME3A LINE L1 5583 5968 -202 2567 90 6 8 chr6 135463373 135463729 -46951513 - THE1A LTR MaLR 0 355 1 10903 95 14 0 chr6 135463729 135465286 -46949956 - THE1A-int LTR MaLR 0 1580 1 2632 88 8 6 chr6 135465286 135465640 -46949602 - THE1A LTR MaLR 0 355 1 32 43 0 0 chr6 135465977 135466023 -46949219 + AT_rich Low_complexity Low_complexity 1 46 0 974 271 4 20 chr6 135466453 135466661 -46948581 - MIR SINE MIR -18 244 39 2012 158 11 11 chr6 135466661 135467022 -46948220 - MER46B DNA MER2_type 0 236 1 974 271 4 20 chr6 135467022 135467060 -46948182 - MIR SINE MIR -223 39 2 1964 164 30 9 chr6 135467113 135467442 -46947800 - MER7A DNA MER2_type -5 341 8 377 244 22 0 chr6 135467879 135467969 -46947273 + L1ME LINE L1 5619 5710 -452 210 173 77 29 chr6 135468093 135468197 -46947045 + (TTAAA)n Simple_repeat Simple_repeat 5 113 0 323 340 43 26 chr6 135468274 135468506 -46946736 + HAL1b LINE L1 991 1226 -122 33 0 0 0 chr6 135469044 135469077 -46946165 + AT_rich Low_complexity Low_complexity 1 33 0 210 276 69 23 chr6 135469423 135469510 -46945732 + L2 LINE L2 3217 3307 -6 876 330 84 72 chr6 135470225 135471299 -46943943 - L3 LINE CR1 -121 1456 370 1888 116 0 4 chr6 135471301 135471568 -46943674 + AluY SINE Alu 1 266 -45 5508 98 4 1 chr6 135471677 135472490 -46942752 + L1PA7 LINE L1 5347 6161 0 1743 204 3 14 chr6 135472500 135472848 -46942394 + MER7A DNA MER2_type 5 346 0 827 243 70 70 chr6 135472851 135473291 -46941951 - L1M4 LINE L1 -1836 4310 3871 208 70 47 0 chr6 135473384 135473427 -46941815 + A-rich Low_complexity Low_complexity 1 45 0 33 25 0 0 chr6 135474341 135474381 -46940861 + AT_rich Low_complexity Low_complexity 1 40 0 920 200 24 0 chr6 135474589 135474759 -46940483 - FRAM SINE Alu -2 174 1 30516 121 63 14 chr6 135475115 135480285 -46934957 - L1P3 LINE L1 -735 5437 7 411 252 37 15 chr6 135480285 135480420 -46934822 + L1ME2 LINE L1 4308 4445 -1701 3232 229 53 23 chr6 135480450 135482032 -46933210 + L1ME2 LINE L1 4529 6158 -6 1067 154 11 0 chr6 135482171 135482346 -46932896 - MER5B DNA MER1_type 0 178 2 270 265 145 0 chr6 135482703 135482786 -46932456 + L2 LINE L2 3172 3266 -6 2231 110 3 0 chr6 135483728 135484028 -46931214 + AluSx SINE Alu 5 305 -7 214 260 0 0 chr6 135484205 135484255 -46930987 + (CA)n Simple_repeat Simple_repeat 1 50 0 312 91 0 0 chr6 135484321 135484365 -46930877 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 345 300 0 0 chr6 135484469 135484559 -46930683 + L1MC4 LINE L1 6614 6703 -1339 272 137 20 0 chr6 135484771 135484822 -46930420 + (TA)n Simple_repeat Simple_repeat 1 52 0 227 173 0 0 chr6 135484842 135484894 -46930348 - L1MC4 LINE L1 -1339 6703 6652 2324 205 9 66 chr6 135485173 135485748 -46929494 - MLT1F LTR MaLR 0 542 1 27 0 0 0 chr6 135486329 135486356 -46928886 + AT_rich Low_complexity Low_complexity 1 27 0 2124 101 4 0 chr6 135486525 135486801 -46928441 + AluSp SINE Alu 1 277 -36 188 373 80 15 chr6 135486997 135487310 -46927932 + L2 LINE L2 2765 3096 -176 646 334 134 18 chr6 135487577 135487825 -46927417 + L3 LINE CR1 221 439 -1138 3506 179 28 58 chr6 135487825 135488676 -46926566 + LTR1B LTR ERV1 1 826 0 646 334 134 18 chr6 135488676 135488873 -46926369 + L3 LINE CR1 439 718 -859 2737 13 0 0 chr6 135488877 135489176 -46926066 - AluYa5 SINE Alu -12 299 1 474 220 11 0 chr6 135489219 135489310 -46925932 - MER20 DNA MER1_type -127 92 1 616 307 140 34 chr6 135489571 135490014 -46925228 + L3 LINE CR1 928 1417 -160 2504 20 41 0 chr6 135491593 135491886 -46923356 - AluY SINE Alu -6 305 1 417 168 232 24 chr6 135493126 135493251 -46921991 - MER4C LTR ERV1 -20 445 295 1667 155 36 58 chr6 135493315 135493677 -46921565 - MER4A LTR ERV1 -310 354 1 2250 147 13 11 chr6 135494312 135494693 -46920549 + L1MA7 LINE L1 5468 5849 -442 319 324 11 11 chr6 135495693 135495832 -46919410 - MLT1I LTR MaLR -188 221 93 431 171 0 45 chr6 135496199 135496287 -46918955 - L2 LINE L2 -5 3308 3225 243 328 34 73 chr6 135496376 135496553 -46918689 + MIR SINE MIR 38 207 -55 467 346 29 5 chr6 135496718 135496926 -46918316 + L2 LINE L2 2490 2702 -612 877 282 139 34 chr6 135497002 135497752 -46917490 + L2 LINE L2 2469 3313 0 45 34 0 0 chr6 135498174 135498233 -46917009 + AT_rich Low_complexity Low_complexity 1 59 0 207 325 98 24 chr6 135499497 135499620 -46915622 - L2 LINE L2 -3 3310 3179 2282 227 73 35 chr6 135500001 135500926 -46914316 - Charlie2 DNA MER1_type -1 2861 1901 32 57 0 0 chr6 135501267 135501320 -46913922 + AT_rich Low_complexity Low_complexity 1 53 0 218 31 0 31 chr6 135502297 135502329 -46912913 + (CA)n Simple_repeat Simple_repeat 2 32 0 258 250 0 0 chr6 135505392 135505444 -46909798 + CT-rich Low_complexity Low_complexity 1 52 0 223 352 92 84 chr6 135505632 135505967 -46909275 - L2 LINE L2 -20 3252 2915 1854 162 3 34 chr6 135506415 135506736 -46908506 + AluJb SINE Alu 1 311 -1 2093 151 134 52 chr6 135507059 135507535 -46907707 + MLT2B2 LTR ERVL 1 515 0 1937 143 49 0 chr6 135509619 135509906 -46905336 - AluSx SINE Alu -11 301 1 27 0 0 0 chr6 135513147 135513174 -46902068 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 135515042 135515070 -46900172 + AT_rich Low_complexity Low_complexity 1 28 0 2919 155 8 10 chr6 135515175 135515697 -46899545 + L1MA8 LINE L1 4502 5022 -1124 1881 151 53 8 chr6 135515718 135516096 -46899146 + L1MA8 LINE L1 5891 6285 -6 27 0 0 0 chr6 135516099 135516126 -46899116 + AT_rich Low_complexity Low_complexity 1 27 0 20603 172 26 17 chr6 135516772 135520491 -46894751 + L1MA2 LINE L1 16 3700 -3865 8689 119 22 0 chr6 135520491 135521747 -46893495 + HSMAR1 DNA Mariner 4 1287 0 20603 172 26 17 chr6 135521747 135521791 -46893451 + L1MA2 LINE L1 3700 3742 -3823 2018 141 0 7 chr6 135521791 135522090 -46893152 + AluSx SINE Alu 1 297 -15 20603 172 26 17 chr6 135522090 135523131 -46892111 + L1MA2 LINE L1 3742 4864 -2701 6799 134 19 5 chr6 135523127 135524492 -46890750 + L1MA2 LINE L1 6339 7723 0 * 1118 296 94 59 chr6 135525276 135526220 -46889022 + L1MEd LINE L1 209 1185 -4934 338 342 71 34 chr6 135526231 135526498 -46888744 + L1MEd LINE L1 1220 1592 -898 316 252 9 18 chr6 135527321 135527432 -46887810 - L1ME LINE L1 -739 5431 5322 25510 141 16 13 chr6 135527444 135533378 -46881864 - L1PA8 LINE L1 -20 6467 454 2250 124 32 32 chr6 135533378 135533757 -46881485 - HERVK9 LTR ERVK -5537 379 1 3054 123 51 6 chr6 135533757 135534246 -46880996 - MER9 LTR ERVK 0 511 1 23 54 0 0 chr6 135534268 135534305 -46880937 + AT_rich Low_complexity Low_complexity 1 37 0 2522 64 0 3 chr6 135534637 135534948 -46880294 + AluY SINE Alu 1 310 -1 182 354 94 10 chr6 135534969 135535065 -46880177 + L3 LINE CR1 2 105 -1472 5986 138 21 22 chr6 135535406 135537103 -46878139 + L1MA8 LINE L1 4340 6032 -259 2559 50 0 0 chr6 135537103 135537402 -46877840 + AluY SINE Alu 1 299 -12 5986 138 21 22 chr6 135537402 135537648 -46877594 + L1MA8 LINE L1 6032 6277 -14 300 281 150 54 chr6 135539263 135539430 -46875812 + MER5A DNA MER1_type 4 186 -3 299 303 154 12 chr6 135539935 135540097 -46875145 + MIR SINE MIR 9 193 -69 2178 126 3 0 chr6 135541159 135541460 -46873782 - AluSx SINE Alu -10 302 1 226 376 94 8 chr6 135541894 135542011 -46873231 - MIR SINE MIR -62 146 20 643 290 113 52 chr6 135542159 135543252 -46871990 + L1MEd LINE L1 6 1257 -4862 559 260 8 0 chr6 135543460 135543583 -46871659 + LTR16A LTR ERVL 325 448 -2 320 244 40 45 chr6 135543629 135543805 -46871437 + L1MC5 LINE L1 7608 7782 -179 286 186 0 17 chr6 135543923 135543982 -46871260 + MLT2C2 LTR ERVL 407 464 0 352 250 34 0 chr6 135544050 135544138 -46871104 - L1MB8 LINE L1 -197 5981 5891 202 393 14 35 chr6 135545572 135545717 -46869525 - L2 LINE L2 -12 3260 3119 450 301 80 30 chr6 135547378 135547577 -46867665 - L2 LINE L2 -1033 2281 2073 299 135 0 0 chr6 135547645 135547697 -46867545 - L1MB1 LINE L1 0 6168 6117 926 258 95 64 chr6 135547994 135548540 -46866702 + L2 LINE L2 1285 1847 -1467 1455 333 87 25 chr6 135550326 135551189 -46864053 + L2 LINE L2 1842 2757 -557 1658 225 38 79 chr6 135551793 135552327 -46862915 + MLT2B1 LTR ERVL 1 512 -8 214 177 76 25 chr6 135554280 135554378 -46860864 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 4163 168 18 0 chr6 135554820 135555552 -46859690 - L1PA16 LINE L1 -9 6157 5413 27272 96 6 14 chr6 135555552 135560486 -46854756 - L1PA7 LINE L1 -2 6152 1259 1388 102 0 0 chr6 135560593 135560770 -46854472 - AluY SINE Alu -133 178 2 699 128 0 0 chr6 135560908 135561017 -46854225 + L1PA15 LINE L1 6049 6157 -8 37818 39 2 4 chr6 135562505 135568034 -46847208 + L1PA4 LINE L1 635 6152 -3 21 36 0 0 chr6 135569040 135569068 -46846174 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 135571257 135571279 -46843963 + AT_rich Low_complexity Low_complexity 1 22 0 708 142 0 0 chr6 135571471 135571577 -46843665 + U6 snRNA snRNA 2 107 0 13053 212 13 37 chr6 135571577 135575405 -46839837 + L1PB4 LINE L1 1808 5449 -707 7454 28 0 0 chr6 135575405 135576416 -46838826 - L1PA4 LINE L1 -4 6151 5136 3218 184 42 20 chr6 135576416 135577110 -46838132 + L1PB4 LINE L1 5438 6148 -8 329 321 36 88 chr6 135577376 135577650 -46837592 + MIR SINE MIR 1 260 -2 197 315 34 11 chr6 135577658 135577747 -46837495 - L2 LINE L2 -292 2980 2890 40 21 0 0 chr6 135578557 135578604 -46836638 + AT_rich Low_complexity Low_complexity 1 47 0 1667 279 104 28 chr6 135578730 135579480 -46835762 - L2 LINE L2 -508 2806 2000 546 119 0 0 chr6 135579878 135579962 -46835280 + (GGA)n Simple_repeat Simple_repeat 3 86 0 756 148 16 28 chr6 135580228 135580410 -46834832 + GA-rich Low_complexity Low_complexity 1 180 0 222 254 0 0 chr6 135580428 135580495 -46834747 + GA-rich Low_complexity Low_complexity 2 68 0 21 43 0 22 chr6 135580544 135580563 -46834679 + AT_rich Low_complexity Low_complexity 1 19 -26 879 207 0 18 chr6 135580563 135580732 -46834510 - FAM SINE Alu -9 166 1 21 43 0 22 chr6 135580732 135580758 -46834484 + AT_rich Low_complexity Low_complexity 19 45 0 209 32 0 32 chr6 135580941 135580972 -46834270 + (TA)n Simple_repeat Simple_repeat 1 30 0 31 107 0 0 chr6 135683055 135683177 -46732065 + AT_rich Low_complexity Low_complexity 1 122 0 524 110 0 0 chr6 135683297 135683402 -46731840 - AluSg/x SINE Alu 0 316 212 259 253 13 0 chr6 135684281 135684360 -46730882 + MER116 DNA Mariner 1 80 0 2112 144 33 25 chr6 135684500 135684861 -46730381 + THE1B LTR MaLR 1 364 0 9552 116 18 4 chr6 135684861 135686220 -46729022 + THE1B-int LTR MaLR 1 1378 -202 814 91 0 9 chr6 135686223 135686333 -46728909 + THE1B LTR MaLR 256 364 0 300 111 111 0 chr6 135686600 135686654 -46728588 + L1MA4A LINE L1 5723 5782 -518 1678 176 21 5 chr6 135686694 135687125 -46728117 + L1MA4A LINE L1 5782 6280 -23 241 374 9 9 chr6 135689035 135689142 -46726100 - L2 LINE L2 -10 3303 3197 23 33 0 0 chr6 135690997 135691027 -46724215 + AT_rich Low_complexity Low_complexity 1 30 0 255 342 117 40 chr6 135691120 135691342 -46723900 - MIR SINE MIR -6 256 18 21 57 0 0 chr6 135697146 135697181 -46718061 + AT_rich Low_complexity Low_complexity 1 35 0 1238 277 55 62 chr6 135697635 135698181 -46717061 - MLT1F LTR MaLR 0 542 1 211 221 78 26 chr6 135698338 135698415 -46716827 + MIR SINE MIR 109 189 -73 314 310 51 74 chr6 135698787 135699003 -46716239 + L3 LINE CR1 1028 1238 -339 195 292 26 71 chr6 135699000 135699036 -46716206 + MIR SINE MIR 50 86 -176 * 1816 144 70 25 chr6 135699036 135699391 -46715851 + THE1C LTR MaLR 1 371 -4 195 292 26 71 chr6 135699391 135699467 -46715775 + MIR SINE MIR 86 157 -105 23 0 0 0 chr6 135700275 135700298 -46714944 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr6 135700504 135700531 -46714711 + AT_rich Low_complexity Low_complexity 1 27 0 532 256 199 26 chr6 135700593 135700979 -46714263 + HAL1b LINE L1 282 734 -614 235 274 0 0 chr6 135700991 135701053 -46714189 - MIR SINE MIR -10 252 191 29 47 0 0 chr6 135701382 135701425 -46713817 + AT_rich Low_complexity Low_complexity 1 43 0 2176 129 0 0 chr6 135701426 135701721 -46713521 - AluSq SINE Alu -18 295 1 2086 157 0 0 chr6 135702466 135702778 -46712464 + AluSx SINE Alu 1 312 0 303 271 56 56 chr6 135702931 135703075 -46712167 + L1MEc LINE L1 1007 1150 -5457 941 196 48 150 chr6 135703686 135704146 -46711096 + L1MC4 LINE L1 7225 7637 -405 42214 39 24 2 chr6 135704146 135710164 -46705078 + L1PA3 LINE L1 4 6155 0 377 271 28 14 chr6 135710298 135710442 -46704800 + L1MC4 LINE L1 7748 7893 -149 2018 142 3 0 chr6 135710737 135711033 -46704209 - AluSx SINE Alu -15 297 1 447 224 21 56 chr6 135711035 135711221 -46704021 + L1MEc LINE L1 1800 1959 -4467 633 279 26 0 chr6 135711223 135711377 -46703865 - MER58B DNA MER1_type -1 340 183 555 283 116 0 chr6 135711583 135711756 -46703486 + MIR SINE MIR 59 251 -11 28 71 0 0 chr6 135712550 135712606 -46702636 + AT_rich Low_complexity Low_complexity 1 56 0 290 262 74 71 chr6 135712700 135713066 -46702176 - HAL1 LINE L1 -135 2372 2006 534 243 46 0 chr6 135713094 135713246 -46701996 - HAL1 LINE L1 -966 1541 1383 1213 233 3 9 chr6 135713288 135713605 -46701637 - L1 LINE L1 -852 5294 4980 795 184 0 0 chr6 135714512 135714653 -46700589 - L1P LINE L1 -1165 4981 4841 * 5449 123 16 7 chr6 135714651 135715506 -46699736 + L1PA16 LINE L1 5304 6166 0 647 265 143 48 chr6 135715580 135715973 -46699269 - HAL1 LINE L1 -1216 1291 862 659 130 0 9 chr6 135716008 135716123 -46699119 + (TCCCC)n Simple_repeat Simple_repeat 3 116 0 10851 186 47 29 chr6 135716123 135719160 -46696082 + L1PBa LINE L1 1094 4232 -2630 2174 118 10 0 chr6 135719160 135719457 -46695785 + AluSq SINE Alu 1 300 -13 10851 186 47 29 chr6 135719457 135720445 -46694797 + L1PBa LINE L1 4232 5200 -1662 640 306 124 11 chr6 135720482 135721015 -46694227 + L1ME3 LINE L1 5349 5941 -221 876 286 102 16 chr6 135721030 135721401 -46693841 + L1M4b LINE L1 21 423 -6436 653 130 0 0 chr6 135721414 135721522 -46693720 + Tigger3(Golem) DNA MER2_type 221 328 -2701 1120 266 67 70 chr6 135721530 135722291 -46692951 + L1M4b LINE L1 2025 2784 -4175 207 0 0 0 chr6 135722291 135722314 -46692928 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1120 266 67 70 chr6 135722314 135722592 -46692650 + L1M4b LINE L1 2784 3061 -3898 * 1714 207 56 48 chr6 135722591 135723075 -46692167 + L1MB8 LINE L1 5689 6176 -2 734 211 86 77 chr6 135724636 135724949 -46690293 - MER5C DNA MER1_type 0 324 9 2081 151 62 42 chr6 135725049 135725454 -46689788 - MSTA LTR MaLR -11 417 5 206 217 50 33 chr6 135725722 135725782 -46689460 + CT-rich Low_complexity Low_complexity 5 65 0 1727 221 11 24 chr6 135726585 135726961 -46688281 + MLT1A2 LTR MaLR 4 374 0 340 272 29 98 chr6 135730185 135730431 -46684811 - L2 LINE L2 -6 3307 3079 501 249 57 40 chr6 135730649 135730826 -46684416 - MIR SINE MIR -2 260 81 350 339 40 8 chr6 135730794 135730918 -46684324 - L2 LINE L2 -474 2840 2713 * 387 380 0 8 chr6 135731010 135731131 -46684111 + L2 LINE L2 3146 3265 -7 1980 171 23 3 chr6 135731355 135731707 -46683535 - MLT1A1 LTR MaLR 0 365 7 28 29 0 0 chr6 135732118 135732153 -46683089 + AT_rich Low_complexity Low_complexity 1 35 0 225 383 19 9 chr6 135733177 135733284 -46681958 + L3 LINE CR1 1443 1550 -27 298 279 93 23 chr6 135733338 135733557 -46681685 + L1ME3A LINE L1 5738 5966 -196 1792 163 0 10 chr6 135733802 135734103 -46681139 - AluSx SINE Alu -14 298 1 2302 88 0 44 chr6 135735151 135735468 -46679774 - AluSq SINE Alu -9 304 2 22 35 0 0 chr6 135736165 135736194 -46679048 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr6 135737589 135737617 -46677625 + (TC)n Simple_repeat Simple_repeat 2 29 0 196 130 43 0 chr6 135737617 135737663 -46677579 + (TA)n Simple_repeat Simple_repeat 2 49 0 237 33 0 0 chr6 135738219 135738249 -46676993 + (TG)n Simple_repeat Simple_repeat 2 31 0 27 0 0 0 chr6 135738367 135738394 -46676848 + AT_rich Low_complexity Low_complexity 1 27 0 270 265 302 16 chr6 135739050 135739239 -46676003 + MIR SINE MIR 20 262 0 22 35 0 0 chr6 135739282 135739311 -46675931 + AT_rich Low_complexity Low_complexity 1 29 0 2825 107 3 0 chr6 135740105 135740488 -46674754 - MLT2A2 LTR ERVL -69 384 1 409 292 113 59 chr6 135741310 135741683 -46673559 + MLT1L LTR MaLR 122 514 -101 432 294 40 0 chr6 135741740 135741866 -46673376 + MIR SINE MIR 2 132 -130 433 288 80 12 chr6 135743250 135743413 -46671829 + MIR SINE MIR 89 262 0 21 36 0 0 chr6 135744261 135744289 -46670953 + AT_rich Low_complexity Low_complexity 1 28 0 786 327 89 24 chr6 135744803 135745173 -46670069 - L3 LINE CR1 -5 1572 1179 189 363 104 7 chr6 135745186 135745321 -46669921 - L2 LINE L2 -4 3268 3121 24 0 0 0 chr6 135745951 135745975 -46669267 + AT_rich Low_complexity Low_complexity 1 24 0 357 359 16 0 chr6 135746040 135746168 -46669074 - MIR SINE MIR -41 221 92 276 350 35 14 chr6 135748982 135749125 -46666117 + MIR SINE MIR 117 262 0 222 235 0 0 chr6 135750126 135750177 -46665065 + (TA)n Simple_repeat Simple_repeat 2 52 0 23 92 0 0 chr6 135750233 135750298 -46664944 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr6 135751594 135751617 -46663625 + AT_rich Low_complexity Low_complexity 1 23 0 183 321 0 18 chr6 135753185 135753241 -46662001 + MIR SINE MIR 29 83 -179 329 311 37 37 chr6 135753404 135753446 -46661796 + MIR SINE MIR 102 143 -119 1780 166 7 3 chr6 135753446 135753735 -46661507 - AluJb SINE Alu -22 290 1 329 311 37 37 chr6 135753735 135753853 -46661389 + MIR SINE MIR 142 262 0 972 224 221 40 chr6 135756121 135756651 -46658591 - MLT1E2 LTR MaLR 0 626 1 42062 57 4 0 chr6 135756880 135762990 -46652252 + L1PA5 LINE L1 11 6145 -9 21 36 0 0 chr6 135762990 135763018 -46652224 + AT_rich Low_complexity Low_complexity 1 28 0 283 287 63 113 chr6 135763176 135763511 -46651731 + MLT1G1-int LTR MaLR 1054 1371 0 230 69 0 0 chr6 135763512 135763541 -46651701 + MLT1G1 LTR MaLR 2 30 -565 1682 243 31 73 chr6 135763622 135764141 -46651101 + MLT1G1 LTR MaLR 72 568 -27 2396 97 0 0 chr6 135765070 135765380 -46649862 + AluSg SINE Alu 1 310 0 353 183 84 0 chr6 135766290 135766361 -46648881 + LTR8 LTR ERV1 1 77 -614 * 397 158 33 117 chr6 135766337 135766457 -46648785 + LTR8A LTR ERV1 618 727 0 209 231 46 9 chr6 135767435 135767543 -46647699 + (TA)n Simple_repeat Simple_repeat 2 113 0 410 351 30 6 chr6 135767673 135767841 -46647401 - MIR SINE MIR -70 192 21 676 280 6 6 chr6 135768325 135768493 -46646749 - MIR SINE MIR -91 171 4 214 146 0 49 chr6 135768780 135768821 -46646421 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 224 359 38 0 chr6 135768988 135769094 -46646148 + MIR3 SINE MIR 99 208 0 273 210 0 0 chr6 135769195 135769257 -46645985 + CT-rich Low_complexity Low_complexity 1 62 0 808 278 0 0 chr6 135770205 135770367 -46644875 + MER45A DNA AcHobo 16 177 -1 258 302 112 59 chr6 135770503 135770672 -46644570 - MIR3 SINE MIR -13 195 18 26 0 0 0 chr6 135772099 135772125 -46643117 + AT_rich Low_complexity Low_complexity 1 26 0 261 0 0 0 chr6 135772168 135772197 -46643045 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr6 135772642 135772671 -46642571 + AT_rich Low_complexity Low_complexity 1 29 0 413 341 65 0 chr6 135772802 135772972 -46642270 + MIR SINE MIR 13 193 -69 2501 113 11 6 chr6 135774173 135774535 -46640707 + THE1B LTR MaLR 1 364 0 309 26 0 0 chr6 135774972 135775010 -46640232 + (CA)n Simple_repeat Simple_repeat 1 38 0 361 383 82 12 chr6 135775338 135775581 -46639661 + MIR SINE MIR 3 262 0 2218 101 0 3 chr6 135775661 135775949 -46639293 + AluSx SINE Alu 9 295 -17 2228 128 29 32 chr6 135776086 135776462 -46638780 - THE1C LTR MaLR 0 375 1 9808 119 28 41 chr6 135776462 135778063 -46637179 - THE1C-int LTR MaLR 0 1580 2 2286 103 38 24 chr6 135778064 135778434 -46636808 - THE1C LTR MaLR 0 375 1 14055 157 13 4 chr6 135780637 135783112 -46632130 + L1PA11 LINE L1 2605 5102 -1044 5780 108 24 0 chr6 135783104 135783944 -46631298 + L1PA11 LINE L1 5314 6173 -1 * 300 295 83 14 chr6 135785090 135785307 -46629935 + L1MCc LINE L1 1283 1514 -4909 854 313 85 12 chr6 135785340 135786224 -46629018 + L1MCc LINE L1 1596 2678 -4263 1720 147 78 39 chr6 135786277 135786638 -46628604 - THE1C LTR MaLR 0 375 1 3734 153 11 11 chr6 135786638 135787254 -46627988 - THE1C-int LTR MaLR 0 1580 965 1353 168 27 42 chr6 135787247 135787509 -46627733 + THE1-int LTR MaLR 715 972 -608 * 245 50 0 25 chr6 135787520 135787560 -46627682 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 2559 133 2 20 chr6 135787561 135787968 -46627274 - THE1C-int LTR MaLR -1178 402 3 1631 166 61 25 chr6 135787971 135788332 -46626910 - THE1C LTR MaLR -1 374 1 241 217 0 0 chr6 135788373 135788419 -46626823 + MSTB2 LTR MaLR 1 46 -411 3779 169 68 18 chr6 135788422 135789512 -46625730 - L1MB3 LINE L1 -129 6054 4912 1333 240 84 0 chr6 135789509 135789892 -46625350 + L1ME2 LINE L1 5741 6155 -9 * 256 349 31 51 chr6 135790415 135790610 -46624632 - L3b LINE CR1 -47 1536 1346 567 262 11 75 chr6 135790761 135790948 -46624294 - MLT1I LTR MaLR -2 407 233 300 331 100 31 chr6 135792248 135792538 -46622704 + L2 LINE L2 2430 2739 -575 280 267 171 9 chr6 135795889 135795994 -46619248 + L2 LINE L2 3191 3312 -1 24 0 0 0 chr6 135796696 135796720 -46618522 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 135796795 135796819 -46618423 + AT_rich Low_complexity Low_complexity 1 24 0 280 261 11 23 chr6 135797396 135797484 -46617758 + MIR SINE MIR 176 262 0 481 220 7 7 chr6 135797602 135797743 -46617499 + CT-rich Low_complexity Low_complexity 2 142 0 211 250 74 56 chr6 135799970 135800078 -46615164 + L2 LINE L2 3139 3248 -65 479 307 58 16 chr6 135800155 135800344 -46614898 + MIR SINE MIR 63 259 -3 35 63 0 0 chr6 135800508 135800571 -46614671 + AT_rich Low_complexity Low_complexity 1 63 0 246 288 80 56 chr6 135801840 135801965 -46613277 + MER5A DNA MER1_type 6 133 -56 22 35 0 0 chr6 135805114 135805143 -46610099 + AT_rich Low_complexity Low_complexity 1 29 0 350 336 49 0 chr6 135805862 135806005 -46609237 - MIR3 SINE MIR -21 187 38 256 337 81 29 chr6 135806021 135806193 -46609049 - MIR SINE MIR -36 226 46 396 285 46 15 chr6 135806658 135806788 -46608454 - L2 LINE L2 0 3272 3139 31 44 0 0 chr6 135806797 135806842 -46608400 + AT_rich Low_complexity Low_complexity 1 45 0 933 291 204 35 chr6 135807005 135807830 -46607412 - L2 LINE L2 -358 2956 1993 440 284 72 84 chr6 135808139 135808389 -46606853 + MIR SINE MIR 1 247 -15 23 54 0 0 chr6 135808762 135808799 -46606443 + AT_rich Low_complexity Low_complexity 1 37 0 271 325 53 9 chr6 135809758 135809872 -46605370 - L2 LINE L2 -5 3308 3190 300 267 11 22 chr6 135811714 135811804 -46603438 + MER5A DNA MER1_type 70 158 -31 189 0 0 0 chr6 135811872 135811893 -46603349 + (CA)n Simple_repeat Simple_repeat 2 22 0 1779 148 0 22 chr6 135811911 135812189 -46603053 - AluSx SINE Alu -38 274 3 1857 194 31 3 chr6 135812213 135812568 -46602674 - MLT1A1 LTR MaLR 0 365 1 267 312 24 24 chr6 135813469 135813594 -46601648 - L3b LINE CR1 -171 1412 1288 22 0 0 0 chr6 135813703 135813725 -46601517 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr6 135813844 135813873 -46601369 + AT_rich Low_complexity Low_complexity 1 29 0 204 300 71 0 chr6 135816559 135816629 -46598613 - MIR3 SINE MIR -30 178 104 743 257 111 21 chr6 135816634 135816922 -46598320 + HAL1 LINE L1 2 315 -2192 21 0 0 0 chr6 135817307 135817328 -46597914 + AT_rich Low_complexity Low_complexity 1 21 0 2075 130 24 0 chr6 135817993 135818286 -46596956 + AluSx SINE Alu 1 300 -12 372 266 18 9 chr6 135818398 135818511 -46596731 - MER94 DNA DNA -20 114 1 343 255 6 0 chr6 135822147 135822251 -46592991 - MIR3 SINE MIR -6 202 97 35 0 0 0 chr6 135822560 135822595 -46592647 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 135822714 135822737 -46592505 + AT_rich Low_complexity Low_complexity 1 23 0 442 326 78 30 chr6 135824117 135824448 -46590794 - LTR16C LTR ERVL 0 491 145 2426 304 168 32 chr6 135824676 135826479 -46588763 + L2 LINE L2 1273 3312 -1 1979 144 0 7 chr6 135826701 135827000 -46588242 + AluSx SINE Alu 3 299 -13 463 294 0 0 chr6 135827709 135827835 -46587407 - L2 LINE L2 -8 3305 3180 2163 86 0 0 chr6 135828283 135828563 -46586679 + AluSg SINE Alu 1 280 -30 303 28 0 0 chr6 135828566 135828602 -46586640 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 1731 138 42 8 chr6 135829295 135829629 -46585613 - MER4A LTR ERV1 0 664 261 566 138 11 11 chr6 135829629 135829723 -46585519 - MER4A LTR ERV1 -566 98 5 4355 162 22 26 chr6 135829960 135830937 -46584305 + L1MA9 LINE L1 5115 6088 -224 21 36 0 0 chr6 135832250 135832278 -46582964 + AT_rich Low_complexity Low_complexity 1 28 0 237 83 0 0 chr6 135832745 135832781 -46582461 + (CA)n Simple_repeat Simple_repeat 2 37 0 361 242 50 0 chr6 135834013 135834112 -46581130 - MER117 DNA MER1_type -49 148 45 25 51 0 0 chr6 135835660 135835699 -46579543 + AT_rich Low_complexity Low_complexity 1 39 0 236 344 43 11 chr6 135835894 135835987 -46579255 - MIR SINE MIR -76 186 91 21 0 0 0 chr6 135836267 135836288 -46578954 + AT_rich Low_complexity Low_complexity 1 21 0 564 244 125 103 chr6 135838143 135838671 -46576571 + L2 LINE L2 2766 3307 -6 379 241 46 3 chr6 135840644 135840844 -46574398 - Charlie4 DNA MER1_type -1683 278 21 2857 156 45 18 chr6 135840889 135841700 -46573542 + L1MA6 LINE L1 5374 6298 -2 366 236 176 14 chr6 135842578 135842726 -46572516 - MIR SINE MIR -56 206 35 22 35 0 0 chr6 135843140 135843169 -46572073 + AT_rich Low_complexity Low_complexity 1 29 0 362 120 13 0 chr6 135843311 135843386 -46571856 + (TC)n Simple_repeat Simple_repeat 1 76 0 556 320 22 36 chr6 135844504 135844782 -46570460 - MLT1K LTR MaLR -1 587 314 381 102 0 0 chr6 135845569 135845628 -46569614 + (GA)n Simple_repeat Simple_repeat 2 60 0 756 136 41 9 chr6 135846685 135846906 -46568336 + CT-rich Low_complexity Low_complexity 1 228 0 909 90 28 22 chr6 135846913 135847091 -46568151 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1172 33 11 33 chr6 135847128 135847311 -46567931 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1017 180 137 35 chr6 135847315 135847570 -46567672 - AluJo SINE Alu -31 281 1 224 205 0 0 chr6 135847619 135847658 -46567584 + (TG)n Simple_repeat Simple_repeat 2 40 0 33 43 0 0 chr6 135848049 135848096 -46567146 + AT_rich Low_complexity Low_complexity 1 47 0 1854 117 8 4 chr6 135849053 135849354 -46565888 + AluSq SINE Alu 19 320 0 2080 116 16 7 chr6 135849833 135850136 -46565106 + AluSp SINE Alu 2 307 -6 333 371 48 0 chr6 135850614 135850781 -46564461 - MIR SINE MIR -56 206 32 385 274 13 51 chr6 135850903 135851060 -46564182 - MIR SINE MIR -56 206 56 263 290 19 0 chr6 135852284 135852391 -46562851 + CT-rich Low_complexity Low_complexity 1 109 0 230 239 171 0 chr6 135852718 135852835 -46562407 - L1ME4a LINE L1 -18 6103 5967 195 184 0 0 chr6 135852866 135852904 -46562338 + (TA)n Simple_repeat Simple_repeat 2 39 0 353 306 98 28 chr6 135852908 135853163 -46562079 - L1ME4a LINE L1 -248 5873 5601 2309 66 0 0 chr6 135853503 135853826 -46561416 - AluY SINE Alu 0 323 1 2185 120 0 0 chr6 135854140 135854449 -46560793 - AluSx SINE Alu -3 309 1 257 229 119 51 chr6 135857141 135857259 -46557983 + L2 LINE L2 3134 3259 -54 21 82 0 0 chr6 135857473 135857522 -46557720 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr6 135858708 135858748 -46556494 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr6 135862317 135862346 -46552896 + AT_rich Low_complexity Low_complexity 1 29 0 461 251 117 66 chr6 135862741 135862993 -46552249 + L1MC4 LINE L1 7537 7813 -229 4068 108 19 20 chr6 135862993 135863322 -46551920 - L1PA13 LINE L1 -4 6159 5830 2180 130 0 0 chr6 135863322 135863622 -46551620 - AluSg SINE Alu -8 302 3 4068 108 19 20 chr6 135863622 135863937 -46551305 - L1PA13 LINE L1 -333 5830 5516 461 251 117 66 chr6 135863937 135864034 -46551208 + L1MC4 LINE L1 7813 7904 -138 275 259 12 12 chr6 135864035 135864116 -46551126 + GA-rich Low_complexity Low_complexity 3 83 0 572 246 53 6 chr6 135865753 135865924 -46549318 - L1ME3A LINE L1 -45 6125 5947 23 54 0 0 chr6 135866401 135866438 -46548804 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr6 135866637 135866673 -46548569 + AT_rich Low_complexity Low_complexity 1 36 0 2195 126 0 0 chr6 135866867 135867168 -46548074 + AluSq SINE Alu 1 301 -12 315 280 28 47 chr6 135867229 135867336 -46547906 + L2 LINE L2 3154 3258 -14 467 323 6 6 chr6 135867585 135867752 -46547490 - L1ME1 LINE L1 -46 6120 5954 6300 49 3 1 chr6 135867769 135868547 -46546695 - L1PA7 LINE L1 -3 6151 5373 12529 96 6 2 chr6 135868547 135870323 -46544919 - L1PA7 LINE L1 -1142 5004 3222 7459 84 11 0 chr6 135870321 135871363 -46543879 + L1PA7 LINE L1 2166 3218 -2928 * 1076 195 73 133 chr6 135871395 135871846 -46543396 - L1ME1 LINE L1 -290 5876 5453 264 359 76 0 chr6 135871894 135872025 -46543217 + MIR SINE MIR 5 145 -117 210 193 0 0 chr6 135872117 135872174 -46543068 + (TG)n Simple_repeat Simple_repeat 2 58 0 1581 126 48 132 chr6 135872179 135872536 -46542706 + MER7A DNA MER2_type 21 345 -1 21 0 0 0 chr6 135873439 135873460 -46541782 + AT_rich Low_complexity Low_complexity 1 21 0 1879 167 52 0 chr6 135873614 135873943 -46541299 + MER7A DNA MER2_type 2 345 -1 464 237 38 70 chr6 135874092 135874278 -46540964 - MER104 DNA MER2_type 0 180 1 258 309 15 0 chr6 135874319 135874387 -46540855 + MIR SINE MIR 83 151 -111 5125 114 25 37 chr6 135874387 135875228 -46540014 - Tigger4(Zombi) DNA MER2_type 0 2731 1901 988 203 0 0 chr6 135875223 135875400 -46539842 - Tigger4(Zombi) DNA MER2_type -2554 177 1 * 321 265 31 92 chr6 135875783 135875979 -46539263 + MIR3 SINE MIR 21 204 -4 230 0 33 0 chr6 135876092 135876122 -46539120 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2213 79 0 0 chr6 135876125 135876404 -46538838 - AluY SINE Alu -32 279 1 471 53 26 13 chr6 135876562 135876638 -46538604 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 24 32 0 0 chr6 135876801 135876832 -46538410 + AT_rich Low_complexity Low_complexity 1 31 0 411 21 0 0 chr6 135877233 135877281 -46537961 + (TG)n Simple_repeat Simple_repeat 1 48 0 1193 198 135 23 chr6 135877430 135877778 -46537464 + MLT1B LTR MaLR 4 390 0 3232 187 48 16 chr6 135877849 135878607 -46536635 - Charlie6 DNA MER1_type 0 3500 2719 435 261 0 0 chr6 135878652 135878744 -46536498 - Charlie6 DNA MER1_type -979 2521 2430 * 1407 303 28 68 chr6 135878741 135879431 -46535811 - Charlie6 DNA MER1_type -2838 662 1 1456 156 107 63 chr6 135879440 135879869 -46535373 + LTR7 LTR ERV1 1 448 -2 16501 92 34 9 chr6 135879871 135882742 -46532500 + HERVH LTR ERV1 1 2987 -4726 921 128 20 0 chr6 135882736 135882884 -46532358 + HERVH LTR ERV1 3140 3290 -4423 * 3356 108 8 2 chr6 135882874 135883372 -46531870 + HERVH LTR ERV1 3492 3992 -3721 4208 140 22 1 chr6 135883375 135884024 -46531218 + HERVH LTR ERV1 4488 5149 -2564 2401 117 33 41 chr6 135884021 135884620 -46530622 + HERVH LTR ERV1 5597 7713 0 * 1387 166 107 63 chr6 135884620 135885049 -46530193 + LTR7 LTR ERV1 1 448 -2 315 85 0 0 chr6 135885996 135886043 -46529199 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 279 160 9 chr6 135886417 135886453 -46528789 - L1ME3A LINE L1 -79 6091 6062 207 100 0 0 chr6 135886453 135886483 -46528759 + (CATA)n Simple_repeat Simple_repeat 2 31 0 312 279 160 9 chr6 135886483 135886771 -46528471 - L1ME3A LINE L1 -108 6062 5655 2196 97 7 3 chr6 135886821 135887154 -46528088 - AluY SINE Alu 0 336 3 336 349 64 0 chr6 135887676 135887785 -46527457 + L2 LINE L2 3155 3270 -2 390 290 38 41 chr6 135887789 135887992 -46527250 + MIR SINE MIR 32 233 -29 186 189 0 0 chr6 135887992 135888029 -46527213 + (TA)n Simple_repeat Simple_repeat 1 37 0 354 303 138 9 chr6 135888796 135889014 -46526228 - Charlie8 DNA MER1_type -2143 274 29 255 357 146 49 chr6 135889359 135889687 -46525555 + L2 LINE L2 2913 3272 0 2180 128 0 6 chr6 135889910 135890222 -46525020 - AluSx SINE Alu 0 312 3 387 361 30 12 chr6 135890234 135890403 -46524839 - MIR SINE MIR -71 191 20 445 284 140 26 chr6 135890963 135891227 -46524015 - LTR33A LTR ERVL 0 523 230 20096 50 2 3 chr6 135892114 135895465 -46519777 - L1PA5 LINE L1 0 6154 2806 2586 75 0 0 chr6 135895465 135895814 -46519428 - L1PA5 LINE L1 -3773 2373 2025 860 99 0 0 chr6 135895813 135895924 -46519318 - L1PA5 LINE L1 -6025 121 11 * 486 195 24 16 chr6 135896119 135896242 -46519000 + MER103 DNA DNA 1 124 -42 545 267 113 20 chr6 135896508 135896800 -46518442 + L1ME LINE L1 5505 5823 -339 233 196 0 0 chr6 135897041 135897097 -46518145 + L1MC4 LINE L1 6648 6703 -1339 224 59 29 0 chr6 135897120 135897154 -46518088 + (TA)n Simple_repeat Simple_repeat 2 36 0 1846 166 3 10 chr6 135897243 135897557 -46517685 + AluSx SINE Alu 1 312 0 363 360 0 0 chr6 135898775 135898889 -46516353 - MIR3 SINE MIR -7 201 88 345 291 175 21 chr6 135899702 135899891 -46515351 - L3 LINE CR1 -2 1575 1358 2150 117 13 0 chr6 135900296 135900604 -46514638 - AluSx SINE Alu 0 312 1 180 345 0 0 chr6 135900892 135900950 -46514292 + L2 LINE L2 3180 3237 -35 22 0 0 0 chr6 135900950 135900972 -46514270 + AT_rich Low_complexity Low_complexity 1 22 0 782 286 0 5 chr6 135900999 135901188 -46514054 - MIR SINE MIR -63 199 12 234 286 119 0 chr6 135902503 135902587 -46512655 + MIR3 SINE MIR 67 160 -48 2026 133 7 3 chr6 135902920 135903220 -46512022 + AluSx SINE Alu 1 301 -11 2253 181 57 0 chr6 135903551 135903955 -46511287 + MSTB LTR MaLR 1 364 0 1798 168 140 11 chr6 135904467 135904818 -46510424 + MSTD LTR MaLR 1 396 0 401 337 95 21 chr6 135904857 135905047 -46510195 + MIR SINE MIR 4 207 -55 25 31 0 0 chr6 135905775 135905807 -46509435 + AT_rich Low_complexity Low_complexity 1 32 0 905 202 66 123 chr6 135905931 135906050 -46509192 - MLT1A1 LTR MaLR 0 457 333 248 0 31 0 chr6 135906050 135906082 -46509160 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 905 202 66 123 chr6 135906082 135906349 -46508893 - MLT1A1 LTR MaLR -124 333 1 35 0 0 0 chr6 135906596 135906631 -46508611 + AT_rich Low_complexity Low_complexity 1 35 0 2575 136 31 98 chr6 135906855 135906932 -46508310 - L1MA9 LINE L1 -1 6311 6230 1318 149 128 72 chr6 135906932 135907177 -46508065 - MER44D DNA MER2_type -1882 609 379 204 67 0 0 chr6 135907177 135907207 -46508035 + (TCTCTG)n Simple_repeat Simple_repeat 3 32 0 1318 149 128 72 chr6 135907207 135907282 -46507960 - MER44D DNA MER2_type -2112 379 1 2575 136 31 98 chr6 135907282 135907356 -46507886 - L1MA9 LINE L1 -82 6230 6153 243 88 0 0 chr6 135907356 135907390 -46507852 + (TG)n Simple_repeat Simple_repeat 1 34 0 2575 136 31 98 chr6 135907390 135907848 -46507394 - L1MA9 LINE L1 -159 6153 5742 226 211 0 53 chr6 135907854 135907911 -46507331 - L1M3c LINE L1 -5388 753 700 1698 305 13 9 chr6 135907934 135908480 -46506762 - L1M3c LINE L1 -5547 594 5 22 88 0 0 chr6 135909133 135909190 -46506052 + AT_rich Low_complexity Low_complexity 1 57 0 826 294 37 5 chr6 135910510 135910728 -46504514 + MIR SINE MIR 17 241 -21 294 206 29 0 chr6 135912032 135912100 -46503142 + MER94 DNA DNA 3 72 -62 35 0 0 0 chr6 135912372 135912407 -46502835 + AT_rich Low_complexity Low_complexity 1 35 0 1557 243 60 19 chr6 135912523 135913087 -46502155 + MER114 LTR ERV 59 645 -3 6748 63 39 0 chr6 135913369 135914822 -46500420 - L1PA7 LINE L1 -3 6151 4661 2403 84 3 0 chr6 135915501 135915800 -46499442 - AluSp SINE Alu -13 300 1 292 229 16 0 chr6 135916436 135916497 -46498745 + MER94 DNA DNA 72 133 -1 692 244 100 0 chr6 135917585 135917765 -46497477 + MIR SINE MIR 17 214 -48 2106 92 20 20 chr6 135921349 135921644 -46493598 + AluY SINE Alu 1 295 -16 2459 123 8 5 chr6 135922183 135922557 -46492685 + THE1C LTR MaLR 1 375 0 9573 108 35 58 chr6 135922557 135924174 -46491068 + THE1C-int LTR MaLR 1 1580 0 2452 144 3 3 chr6 135924174 135924549 -46490693 + THE1C LTR MaLR 1 375 0 387 186 10 41 chr6 135925018 135925115 -46490127 - L1MB8 LINE L1 -6 6172 6079 26375 164 20 15 chr6 135925116 135928970 -46486272 + ERVL-B1 LTR ERVL 1264 5147 -617 2061 171 9 15 chr6 135928970 135929309 -46485933 - MER1B DNA MER1_type 0 337 1 26375 164 20 15 chr6 135929309 135929916 -46485326 + ERVL-B1 LTR ERVL 5147 5749 -15 1715 214 49 5 chr6 135929924 135930341 -46484901 + MLT2B1 LTR ERVL 1 481 -39 35 83 0 0 chr6 135932471 135932555 -46482687 + AT_rich Low_complexity Low_complexity 1 84 0 557 288 124 51 chr6 135933165 135933489 -46481753 + L1M4 LINE L1 3086 3385 -2761 1858 40 58 0 chr6 135933489 135933715 -46481527 + AluY SINE Alu 63 301 -10 557 288 124 51 chr6 135933715 135933995 -46481247 + L1M4 LINE L1 3385 3734 -2412 714 342 117 36 chr6 135934561 135935596 -46479646 + L2 LINE L2 1728 2846 -468 323 130 0 0 chr6 135936101 135936155 -46479087 - Alu SINE Alu 0 302 249 183 42 0 0 chr6 135937170 135937194 -46478048 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 279 342 17 33 chr6 135937855 135937975 -46477267 + MIR SINE MIR 36 153 -109 184 397 52 6 chr6 135940257 135940431 -46474811 + L2 LINE L2 2796 2977 -337 2324 109 52 3 chr6 135941245 135941592 -46473650 + THE1B LTR MaLR 1 364 0 282 302 172 0 chr6 135942459 135942575 -46472667 + MIR3 SINE MIR 58 193 -15 23 0 0 0 chr6 135943148 135943171 -46472071 + AT_rich Low_complexity Low_complexity 1 23 0 228 298 0 0 chr6 135943184 135943241 -46472001 + (TG)n Simple_repeat Simple_repeat 1 57 0 308 222 0 0 chr6 135943447 135943501 -46471741 + L2 LINE L2 3211 3264 -8 269 237 13 26 chr6 135944266 135944342 -46470900 + GA-rich Low_complexity Low_complexity 2 76 0 180 0 0 0 chr6 135945828 135945848 -46469394 + (TTA)n Simple_repeat Simple_repeat 2 21 0 535 357 27 18 chr6 135946789 135947013 -46468229 - MIR SINE MIR -24 238 13 286 231 67 48 chr6 135947654 135947758 -46467484 - L2 LINE L2 0 3313 3208 233 331 97 8 chr6 135947757 135947881 -46467361 - L3 LINE CR1 -196 1381 1247 * 384 111 0 111 chr6 135948373 135948454 -46466788 - MADE1 DNA Mariner 0 80 9 333 93 0 19 chr6 135948446 135948500 -46466742 + MADE1 DNA Mariner 28 80 0 * 1077 178 11 0 chr6 135948546 135948731 -46466511 + MER2 DNA MER2_type 23 209 -136 21 36 0 0 chr6 135949677 135949705 -46465537 + AT_rich Low_complexity Low_complexity 1 28 0 739 251 16 11 chr6 135950067 135950254 -46464988 + MER5A DNA MER1_type 1 188 -1 483 283 10 10 chr6 135950772 135950903 -46464339 + MIR SINE MIR 1 134 -74 928 169 59 110 chr6 135951229 135951566 -46463676 + MER33 DNA MER1_type 5 324 0 2746 97 12 5 chr6 135951658 135952060 -46463182 + L1PA13 LINE L1 5756 6160 -3 310 228 53 0 chr6 135952616 135952730 -46462512 + (TA)n Simple_repeat Simple_repeat 1 120 0 378 0 0 0 chr6 135952752 135952794 -46462448 + (TA)n Simple_repeat Simple_repeat 1 42 0 215 294 140 35 chr6 135953679 135953822 -46461420 + L2 LINE L2 3114 3271 -1 182 349 0 16 chr6 135954194 135954257 -46460985 - L2 LINE L2 -2 3270 3209 21 36 0 0 chr6 135955513 135955541 -46459701 + AT_rich Low_complexity Low_complexity 1 28 0 190 250 0 58 chr6 135955541 135955593 -46459649 + L2 LINE L2 3242 3290 -23 278 315 90 22 chr6 135956206 135956384 -46458858 - MIR SINE MIR -71 191 2 348 347 8 8 chr6 135957148 135957272 -46457970 + MER5A DNA MER1_type 7 130 -59 40 0 0 0 chr6 135958224 135958264 -46456978 + AT_rich Low_complexity Low_complexity 1 40 0 180 77 0 0 chr6 135958272 135958298 -46456944 + (TAAAAA)n Simple_repeat Simple_repeat 4 29 0 250 286 57 80 chr6 135959194 135959369 -46455873 - MER5A DNA MER1_type -2 187 17 583 250 7 33 chr6 135959538 135959690 -46455552 - MER5B DNA MER1_type -30 148 1 425 166 276 6 chr6 135959826 135959965 -46455277 + MER5A DNA MER1_type 6 188 -1 231 300 56 56 chr6 135960434 135960524 -46454718 - L2 LINE L2 -47 3225 3136 373 301 34 14 chr6 135960717 135960863 -46454379 - L2 LINE L2 -557 2757 2609 380 237 62 103 chr6 135960971 135961195 -46454047 + L1ME4a LINE L1 5654 5868 -253 227 394 52 44 chr6 135962089 135962338 -46452904 - L2 LINE L2 -97 3175 2925 276 30 0 0 chr6 135964086 135964119 -46451123 + (TTG)n Simple_repeat Simple_repeat 3 35 0 1655 168 0 21 chr6 135964123 135964403 -46450839 - AluJo SINE Alu -38 274 1 661 208 32 63 chr6 135964913 135965134 -46450108 + L2 LINE L2 3100 3313 0 197 373 13 0 chr6 135965141 135965216 -46450026 + MIR SINE MIR 45 120 -142 558 151 19 0 chr6 135965218 135965324 -46449918 - L1MB3 LINE L1 -2 6181 6074 1046 194 22 0 chr6 135965348 135965580 -46449662 - L1MB3 LINE L1 -9 6174 5938 888 182 0 34 chr6 135965581 135965757 -46449485 - AluJb SINE Alu -86 226 57 2267 170 61 24 chr6 135965757 135966217 -46449025 - L1MB3 LINE L1 -260 5923 5447 24 0 0 0 chr6 135967271 135967295 -46447947 + AT_rich Low_complexity Low_complexity 1 24 0 544 289 79 55 chr6 135967714 135968185 -46447057 + HAL1 LINE L1 1109 1590 -917 1637 163 182 14 chr6 135969224 135969587 -46445655 + MSTA LTR MaLR 5 428 0 236 261 0 33 chr6 135969623 135969715 -46445527 - L1MC4 LINE L1 -1339 6703 6615 259 244 24 12 chr6 135969716 135969798 -46445444 + (TA)n Simple_repeat Simple_repeat 2 84 0 2170 110 0 17 chr6 135970128 135970427 -46444815 - AluSc SINE Alu -15 294 1 978 196 149 50 chr6 135970851 135971152 -46444090 + MLT1A1 LTR MaLR 2 332 -33 762 174 136 51 chr6 135972748 135972983 -46442259 + MIR SINE MIR 8 262 0 864 129 0 0 chr6 135973478 135973602 -46441640 + AluSg/x SINE Alu 166 289 -21 587 252 131 27 chr6 135973637 135973859 -46441383 + MIR SINE MIR 18 262 0 21 36 0 0 chr6 135973896 135973924 -46441318 + AT_rich Low_complexity Low_complexity 1 28 0 2268 101 7 0 chr6 135974407 135974713 -46440529 + AluSq SINE Alu 1 308 -5 226 357 164 25 chr6 135975139 135975383 -46439859 - L2 LINE L2 -189 3083 2806 499 337 45 0 chr6 135978463 135978662 -46436580 + MLT1K LTR MaLR 2 209 -379 405 54 0 0 chr6 135978729 135978785 -46436457 + (TG)n Simple_repeat Simple_repeat 2 57 0 641 297 24 9 chr6 135978844 135979056 -46436186 + MLT1K LTR MaLR 374 588 0 261 240 33 8 chr6 135980333 135980454 -46434788 + (TA)n Simple_repeat Simple_repeat 1 124 0 26 0 0 0 chr6 135981209 135981235 -46434007 + AT_rich Low_complexity Low_complexity 1 26 0 614 222 132 53 chr6 135981496 135981685 -46433557 + MIR SINE MIR 13 216 -46 1282 320 105 25 chr6 135981718 135982640 -46432602 + L2 LINE L2 2307 3305 -8 186 103 0 0 chr6 135983254 135983283 -46431959 + (A)n Simple_repeat Simple_repeat 1 29 0 356 289 96 15 chr6 135984033 135984168 -46431074 - MIR SINE MIR -59 203 58 21 0 0 0 chr6 135984898 135984919 -46430323 + AT_rich Low_complexity Low_complexity 1 21 0 1912 159 0 0 chr6 135985108 135985410 -46429832 + AluJb SINE Alu 1 302 -10 1776 156 11 0 chr6 135987136 135987419 -46427823 - AluJb SINE Alu -26 286 1 24 32 0 0 chr6 135989021 135989052 -46426190 + AT_rich Low_complexity Low_complexity 1 31 0 277 336 127 35 chr6 135989502 135989731 -46425511 - MIR SINE MIR 0 262 13 240 35 0 0 chr6 135989992 135990021 -46425221 + (GA)n Simple_repeat Simple_repeat 1 29 0 614 253 122 67 chr6 135990065 135990559 -46424683 + LTR33A LTR ERVL 1 521 -2 222 37 0 0 chr6 135990869 135990896 -46424346 + (GA)n Simple_repeat Simple_repeat 2 28 0 457 337 23 17 chr6 135994685 135994857 -46420385 - MIR SINE MIR -42 220 48 2342 86 0 3 chr6 135995120 135995423 -46419819 - AluSc SINE Alu -4 305 4 293 325 33 33 chr6 135996154 135996305 -46418937 - L3 LINE CR1 -67 1510 1360 2012 104 24 3 chr6 135996790 135997087 -46418155 - THE1C LTR MaLR -72 303 1 210 309 79 100 chr6 135997130 135997421 -46417821 + L2 LINE L2 2969 3253 -19 237 108 0 0 chr6 135997428 135997465 -46417777 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 2442 69 0 0 chr6 135999616 135999919 -46415323 - AluY SINE Alu -8 303 1 210 118 0 0 chr6 135999930 135999964 -46415278 + (T)n Simple_repeat Simple_repeat 1 34 0 1156 107 44 11 chr6 136000399 136000713 -46414529 - THE1C LTR MaLR 0 375 1 232 289 124 10 chr6 136000936 136001033 -46414209 - MIR SINE MIR -1 261 154 2027 143 0 6 chr6 136001038 136001353 -46413889 - AluSq SINE Alu 0 313 1 184 328 35 43 chr6 136002203 136002319 -46412923 + MER5B DNA MER1_type 46 160 -18 208 419 0 0 chr6 136002209 136002302 -46412940 - MER5A DNA MER1_type -50 139 47 1964 153 0 0 chr6 136002897 136003197 -46412045 + AluSx SINE Alu 1 300 -12 404 233 10 0 chr6 136003251 136003354 -46411888 - MIR SINE MIR 0 262 159 1421 264 84 7 chr6 136003357 136003826 -46411416 - MLT1H LTR MaLR -2 547 12 376 279 139 23 chr6 136003832 136003961 -46411281 - MIR SINE MIR -98 164 21 185 188 0 130 chr6 136004028 136004097 -46411145 - L2 LINE L2 -791 2523 2464 226 298 156 34 chr6 136004214 136004419 -46410823 - L2 LINE L2 -952 2362 2133 21 0 0 0 chr6 136004583 136004604 -46410638 + AT_rich Low_complexity Low_complexity 1 21 0 445 284 54 23 chr6 136004924 136005155 -46410087 + L1ME LINE L1 5299 5541 -621 219 331 22 52 chr6 136005892 136006028 -46409214 - L3b LINE CR1 -86 1497 1366 248 226 0 0 chr6 136007941 136007994 -46407248 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 285 262 57 47 chr6 136008222 136008501 -46406741 - L1ME4a LINE L1 -3 6118 5837 1091 243 52 23 chr6 136008728 136009359 -46405883 + L1M4c LINE L1 2025 2679 -3703 332 64 0 0 chr6 136009359 136009406 -46405836 + MADE1 DNA Mariner 1 47 -33 303 309 48 0 chr6 136009406 136009613 -46405629 + L1M4c LINE L1 2105 2321 -4063 245 139 0 0 chr6 136009614 136009657 -46405585 + MADE1 DNA Mariner 38 80 0 9242 229 30 27 chr6 136009657 136009773 -46405469 + L1M4c LINE L1 2678 2792 -3590 3787 136 49 26 chr6 136009773 136009894 -46405348 + MER39 LTR ERV1 1 118 -589 2779 22 0 0 chr6 136009894 136010210 -46405032 - AluYb8 SINE Alu -2 316 1 3787 136 49 26 chr6 136010210 136010779 -46404463 + MER39 LTR ERV1 118 707 0 9242 229 30 27 chr6 136010779 136013376 -46401866 + L1M4c LINE L1 2792 5400 -982 1039 133 15 0 chr6 136013416 136013611 -46401631 - L1P5 LINE L1 -699 5457 5260 * 2932 151 46 6 chr6 136013608 136014319 -46400923 + L1PB4 LINE L1 5053 5787 -369 658 90 0 0 chr6 136014327 136014416 -46400826 + L1PA7 LINE L1 9 97 -6364 225 0 0 0 chr6 136014426 136014451 -46400791 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2471 109 8 3 chr6 136014452 136014827 -46400415 + L1PA7 LINE L1 421 797 -5664 * 25175 93 9 11 chr6 136014826 136019340 -46395902 + L1PA7 LINE L1 1965 6469 0 2151 159 3 5 chr6 136019443 136019821 -46395421 + L1PB4 LINE L1 5766 6142 -14 1509 180 0 68 chr6 136020358 136020698 -46394544 + AluJb SINE Alu 1 319 0 295 244 99 84 chr6 136020722 136020853 -46394389 + L2 LINE L2 3140 3272 0 22 0 0 0 chr6 136021768 136021790 -46393452 + AT_rich Low_complexity Low_complexity 1 22 0 386 340 25 25 chr6 136022605 136022634 -46392608 - MIR SINE MIR -69 193 165 1942 169 11 19 chr6 136022634 136023002 -46392240 + MER47A DNA MER2_type 1 365 -1 386 340 25 25 chr6 136023002 136023134 -46392108 - MIR SINE MIR -96 166 32 200 163 0 20 chr6 136023253 136023302 -46391940 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 449 281 110 0 chr6 136023346 136023492 -46391750 - MIR SINE MIR -61 201 40 293 309 25 0 chr6 136023518 136023599 -46391643 + MER5A DNA MER1_type 16 98 -91 199 343 167 19 chr6 136023727 136023835 -46391407 + L2 LINE L2 3134 3257 -15 1983 162 0 0 chr6 136024040 136024343 -46390899 - AluSx SINE Alu -9 303 1 304 339 107 6 chr6 136024783 136024951 -46390291 - MIR SINE MIR -6 256 72 254 311 29 19 chr6 136025149 136025252 -46389990 - L2 LINE L2 -31 3282 3179 5352 191 37 14 chr6 136025295 136026865 -46388377 + L1MC2 LINE L1 4737 6342 -2 287 362 64 25 chr6 136027692 136027974 -46387268 - L2 LINE L2 -1292 2022 1730 199 280 120 0 chr6 136028245 136028320 -46386922 - L2 LINE L2 -1 3312 3229 1697 250 135 20 chr6 136029193 136029794 -46385448 + L1ME2 LINE L1 5483 6152 -12 306 259 47 80 chr6 136029838 136030050 -46385192 + L1MC4 LINE L1 7837 8041 -1 296 329 208 14 chr6 136030347 136030563 -46384679 + MIR SINE MIR 5 262 0 2131 133 0 0 chr6 136032229 136032537 -46382705 + AluSx SINE Alu 1 308 -4 1372 267 36 29 chr6 136032810 136033286 -46381956 - MLT1D LTR MaLR -22 483 5 2014 111 62 0 chr6 136033466 136033754 -46381488 - AluSx SINE Alu -6 306 1 295 306 33 16 chr6 136034167 136034288 -46380954 - L2 LINE L2 0 3313 3191 5490 50 3 1 chr6 136036003 136036681 -46378561 - L1PA7 LINE L1 -4 6150 5472 207 69 0 0 chr6 136038168 136038197 -46377045 + (TG)n Simple_repeat Simple_repeat 2 30 0 328 306 15 0 chr6 136038432 136038562 -46376680 - MER20B DNA MER1_type -4 215 81 2445 83 0 0 chr6 136038959 136039259 -46375983 + AluSg SINE Alu 1 300 -10 364 306 96 35 chr6 136039957 136040218 -46375024 - L3b LINE CR1 -171 1412 1136 181 397 70 6 chr6 136040420 136040576 -46374666 - L2 LINE L2 -182 3090 2925 368 315 155 14 chr6 136040651 136040870 -46374372 - MIR SINE MIR -10 252 3 41 0 0 0 chr6 136040973 136041014 -46374228 + AT_rich Low_complexity Low_complexity 1 41 0 198 345 73 71 chr6 136041079 136041583 -46373659 - L2 LINE L2 -685 2629 2125 243 288 88 8 chr6 136043528 136043653 -46371589 + MIR SINE MIR 120 254 -8 415 172 1 1 chr6 136043777 136043853 -46371389 - MIR SINE MIR -30 178 102 2198 59 21 17 chr6 136045663 136045953 -46369289 + AluY SINE Alu 1 291 -20 1193 174 29 126 chr6 136046554 136046968 -46368274 - MLT1A2 LTR MaLR 0 374 1 29 0 0 0 chr6 136047488 136047517 -46367725 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr6 136047657 136047695 -46367547 + (TG)n Simple_repeat Simple_repeat 2 39 0 296 278 113 68 chr6 136047808 136047941 -46367301 - L2 LINE L2 0 3272 3134 24 32 0 0 chr6 136049180 136049211 -46366031 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 136049363 136049396 -46365846 + AT_rich Low_complexity Low_complexity 1 33 0 397 296 139 34 chr6 136049683 136050035 -46365207 - MLT1G LTR MaLR 0 590 202 1737 206 27 22 chr6 136050438 136050850 -46364392 - MLT2D LTR ERVL 0 414 1 234 222 46 56 chr6 136051102 136051210 -46364032 + LTR67 LTR ERVL 435 541 -16 437 160 9 193 chr6 136051776 136051988 -46363254 + L1MB7 LINE L1 6012 6184 0 277 94 57 0 chr6 136052761 136052814 -46362428 + GA-rich Low_complexity Low_complexity 5 60 0 315 85 0 0 chr6 136052901 136052948 -46362294 + (TC)n Simple_repeat Simple_repeat 2 48 0 236 118 118 0 chr6 136054383 136054434 -46360808 - L1PA15 LINE L1 0 6165 6109 1901 130 58 0 chr6 136055588 136055881 -46359361 - AluSx SINE Alu -2 310 1 271 356 11 27 chr6 136056157 136056345 -46358897 + L2 LINE L2 2473 2657 -657 182 335 86 33 chr6 136056532 136056684 -46358558 + L2 LINE L2 2901 3060 -212 26 30 0 0 chr6 136057513 136057546 -46357696 + AT_rich Low_complexity Low_complexity 1 33 0 1485 232 31 28 chr6 136058924 136059316 -46355926 - MLT1D LTR MaLR 0 505 113 290 364 74 13 chr6 136059455 136059706 -46355536 - L2 LINE L2 -234 3038 2776 270 56 0 0 chr6 136059816 136059852 -46355390 + (A)n Simple_repeat Simple_repeat 1 36 0 350 290 68 61 chr6 136060185 136060348 -46354894 - MIR SINE MIR -66 142 30 243 382 0 16 chr6 136060399 136060522 -46354720 - MIR SINE MIR -140 122 2 1058 103 11 46 chr6 136061156 136061331 -46353911 - L1PA12 LINE L1 -339 5829 5661 186 103 0 0 chr6 136061708 136061737 -46353505 + (CA)n Simple_repeat Simple_repeat 1 29 0 2276 72 7 7 chr6 136062283 136062576 -46352666 - AluY SINE Alu -18 293 1 650 278 35 43 chr6 136064157 136064387 -46350855 - MIR SINE MIR -27 235 8 184 225 70 42 chr6 136066340 136066411 -46348831 - L2 LINE L2 -74 3239 3167 22 0 0 0 chr6 136067910 136067932 -46347310 + AT_rich Low_complexity Low_complexity 1 22 0 400 239 24 19 chr6 136068781 136068968 -46346274 + MLT1J2 LTR MaLR 267 407 -2 611 260 142 28 chr6 136068984 136069415 -46345827 - L1ME4a LINE L1 -117 6004 5525 294 330 68 11 chr6 136070235 136070426 -46344816 + LTR67 LTR ERVL 356 557 0 328 304 51 68 chr6 136070564 136070916 -46344326 - L1ME4a LINE L1 -3600 2546 2201 376 259 24 128 chr6 136071267 136071556 -46343686 - HsTC2 DNA Tc2 -1593 305 47 1385 230 32 48 chr6 136071963 136072337 -46342905 - MLT1E3 LTR MaLR -4 620 253 432 279 37 7 chr6 136072352 136072488 -46342754 - MLT1E3 LTR MaLR -514 140 1 22 56 0 0 chr6 136072807 136072843 -46342399 + AT_rich Low_complexity Low_complexity 1 36 0 279 283 28 19 chr6 136073843 136073949 -46341293 - MLT1K LTR MaLR -200 388 282 507 279 15 45 chr6 136074123 136074324 -46340918 + L2 LINE L2 1855 2049 -1265 759 284 159 46 chr6 136074325 136074885 -46340357 + L2 LINE L2 2694 3313 0 254 218 36 146 chr6 136074890 136075055 -46340187 - MLT1K LTR MaLR -128 460 314 9804 178 18 17 chr6 136075495 136078139 -46337103 + L1PA13 LINE L1 2354 5004 -1142 5908 106 7 0 chr6 136078133 136078985 -46336257 + L1PA10 LINE L1 5314 6171 0 * 5204 140 34 1 chr6 136078985 136080106 -46335136 + L1PA13 LINE L1 5005 6160 -3 38074 84 11 6 chr6 136080367 136086476 -46328766 + L1PA6 LINE L1 11 6141 -13 1723 247 12 27 chr6 136086493 136086771 -46328471 - L1 LINE L1 -2691 3455 3174 2393 87 3 0 chr6 136086771 136087080 -46328162 - AluSx SINE Alu -2 310 1 1723 247 12 27 chr6 136087080 136087387 -46327855 - L1 LINE L1 -2972 3174 2879 * 6114 184 87 14 chr6 136087385 136088137 -46327105 + L1PA16 LINE L1 3464 4160 -2006 288 0 0 0 chr6 136088137 136088169 -46327073 + (CA)n Simple_repeat Simple_repeat 2 33 0 6114 184 87 14 chr6 136088169 136089907 -46325335 + L1PA16 LINE L1 4160 6157 -9 1553 242 28 38 chr6 136090257 136090650 -46324592 + MLT1E2 LTR MaLR 235 623 -3 2381 243 51 19 chr6 136090659 136091152 -46324090 - L1M4 LINE L1 -1480 4666 4137 231 36 0 0 chr6 136091152 136091180 -46324062 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 2381 243 51 19 chr6 136091180 136091472 -46323770 - L1M4 LINE L1 -2009 4137 3856 1973 155 10 0 chr6 136092233 136092542 -46322700 - AluSx SINE Alu 0 312 1 2111 164 37 35 chr6 136092774 136093322 -46321920 - MLT2A2 LTR ERVL 0 554 2 1731 88 92 28 chr6 136093715 136093999 -46321243 - Tigger4(Zombi) DNA MER2_type 0 2731 2430 12609 150 39 17 chr6 136094015 136094309 -46320933 - Tigger4(Zombi) DNA MER2_type -468 2263 1977 2421 115 25 3 chr6 136094309 136094665 -46320577 - THE1B LTR MaLR 0 364 1 12609 150 39 17 chr6 136094665 136096579 -46318663 - Tigger4(Zombi) DNA MER2_type -754 1977 7 192 97 0 0 chr6 136096579 136096610 -46318632 + (TC)n Simple_repeat Simple_repeat 2 32 0 240 86 0 0 chr6 136096614 136096649 -46318593 + (CA)n Simple_repeat Simple_repeat 2 36 0 2632 108 31 5 chr6 136096691 136097081 -46318161 + MLT2A1 LTR ERVL 1 400 -44 21 0 0 0 chr6 136097081 136097102 -46318140 + AT_rich Low_complexity Low_complexity 1 21 0 423 56 0 0 chr6 136097106 136097160 -46318082 + (TA)n Simple_repeat Simple_repeat 1 54 0 363 89 0 18 chr6 136097160 136097216 -46318026 + MLT2A1 LTR ERVL 399 453 0 253 171 12 49 chr6 136097523 136097605 -46317637 + L1MEc LINE L1 74 152 -6244 274 167 51 0 chr6 136097636 136097714 -46317528 + L1MC5 LINE L1 7118 7199 -762 1226 234 97 26 chr6 136097770 136098278 -46316964 + L1MC5 LINE L1 7305 7848 -113 226 339 52 0 chr6 136098325 136098440 -46316802 + L1ME3A LINE L1 6016 6136 -34 484 309 0 0 chr6 136098441 136098567 -46316675 + FLAM_A SINE Alu 1 126 -7 240 257 0 14 chr6 136098586 136098656 -46316586 - L1ME LINE L1 -5679 391 323 461 165 24 45 chr6 136098694 136098852 -46316390 - MER20 DNA MER1_type -1 218 28 228 67 0 0 chr6 136099208 136099238 -46316004 + (CA)n Simple_repeat Simple_repeat 1 30 0 267 281 101 42 chr6 136099273 136099511 -46315731 - HAL1b LINE L1 -998 350 99 21 57 0 0 chr6 136099889 136099924 -46315318 + AT_rich Low_complexity Low_complexity 1 35 0 366 23 0 0 chr6 136100082 136100125 -46315117 + (TG)n Simple_repeat Simple_repeat 2 44 0 2259 128 0 0 chr6 136100484 136100796 -46314446 - AluSx SINE Alu 0 312 1 447 248 81 56 chr6 136101245 136101392 -46313850 - L1MEd LINE L1 -3519 2610 2468 2494 65 0 3 chr6 136101392 136101702 -46313540 - AluY SINE Alu -2 309 1 447 248 81 56 chr6 136101702 136101913 -46313329 - L1MEd LINE L1 -3661 2468 2243 445 291 24 36 chr6 136101926 136102091 -46313151 + MIR SINE MIR 2 164 -98 264 303 89 55 chr6 136102130 136102401 -46312841 - MER68 LTR ERV1 -57 505 226 243 158 0 0 chr6 136102779 136102817 -46312425 + Alu SINE Alu 1 38 -263 314 313 28 50 chr6 136102948 136103130 -46312112 + L1MEc LINE L1 1310 1487 -4909 1864 134 11 4 chr6 136103132 136103449 -46311793 + AluY SINE Alu 3 321 0 1159 220 17 0 chr6 136103498 136103734 -46311508 + MLT1C LTR MaLR 1 240 -227 387 285 129 62 chr6 136103737 136104203 -46311039 - L1MEd LINE L1 -5092 1027 531 6194 33 4 0 chr6 136105012 136105749 -46309493 + L1PA5 LINE L1 5413 6152 -2 296 247 71 24 chr6 136106952 136107037 -46308205 + L2 LINE L2 3225 3313 0 340 324 0 27 chr6 136107425 136107536 -46307706 + MIR SINE MIR 40 147 -115 189 94 0 0 chr6 136108671 136108703 -46306539 + (TTTAG)n Simple_repeat Simple_repeat 3 34 0 264 252 165 35 chr6 136111240 136111355 -46303887 + L2 LINE L2 3183 3312 -1 361 53 18 18 chr6 136111426 136111483 -46303759 + (TA)n Simple_repeat Simple_repeat 2 58 0 270 0 0 0 chr6 136111482 136111512 -46303730 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 2789 188 8 4 chr6 136111528 136112045 -46303197 - MER45B DNA AcHobo -3 1037 519 1622 233 15 6 chr6 136112054 136112380 -46302862 - MER45B DNA AcHobo -711 329 1 185 0 40 0 chr6 136112734 136112759 -46302483 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 226 250 0 18 chr6 136112761 136112817 -46302425 - MER112 DNA MER1_type -191 69 15 487 328 28 6 chr6 136113092 136113269 -46301973 - MIR SINE MIR -56 206 26 260 321 208 9 chr6 136114366 136114578 -46300664 + L2 LINE L2 1995 2248 -1066 240 315 177 32 chr6 136114578 136114889 -46300353 - L2 LINE L2 0 3313 2958 242 308 127 69 chr6 136114903 136115163 -46300079 + L2 LINE L2 2242 2516 -798 2495 64 3 3 chr6 136115499 136115810 -46299432 - AluY SINE Alu 0 311 1 1898 263 79 16 chr6 136115875 136116483 -46298759 + L2 LINE L2 2187 2832 -482 331 305 249 12 chr6 136116498 136116747 -46298495 + L2 LINE L2 184 491 -2823 21 0 0 0 chr6 136116761 136116782 -46298460 + AT_rich Low_complexity Low_complexity 1 21 0 1750 154 0 30 chr6 136117256 136117554 -46297688 + AluSx SINE Alu 14 302 -10 260 289 70 35 chr6 136118144 136118258 -46296984 + MIR SINE MIR 95 212 -50 1510 131 21 0 chr6 136118750 136118987 -46296255 - L1MA4 LINE L1 -438 5862 5621 1420 144 58 0 chr6 136119000 136119277 -46295965 + L1MA4 LINE L1 6008 6300 0 35 95 0 0 chr6 136119683 136119788 -46295454 + AT_rich Low_complexity Low_complexity 1 105 0 347 312 239 5 chr6 136120255 136120460 -46294782 - MIR SINE MIR -7 255 3 368 206 0 0 chr6 136120461 136120529 -46294713 + MIR3 SINE MIR 125 192 -16 229 287 21 43 chr6 136120965 136121059 -46294183 - MIR3 SINE MIR -13 195 104 530 241 66 15 chr6 136121151 136121288 -46293954 + MIR SINE MIR 119 262 0 451 275 50 45 chr6 136121794 136121994 -46293248 - MIR SINE MIR -50 212 12 204 158 0 0 chr6 136122296 136122334 -46292908 + A-rich Low_complexity Low_complexity 1 38 0 349 329 71 32 chr6 136122958 136123113 -46292129 + MIR3 SINE MIR 45 205 -3 246 294 39 39 chr6 136124683 136124785 -46290457 + LTR40b LTR ERVL 282 383 -79 * 437 278 28 0 chr6 136124781 136124889 -46290353 - MER63 DNA MER1_type -277 785 675 945 232 11 0 chr6 136125204 136125394 -46289848 + HERVL40 LTR ERVL 5339 5530 0 1722 266 52 11 chr6 136125397 136125874 -46289368 + LTR40a LTR ERVL 4 500 -19 2575 49 3 0 chr6 136125906 136126211 -46289031 + AluY SINE Alu 1 306 -5 25 0 0 0 chr6 136126618 136126643 -46288599 + AT_rich Low_complexity Low_complexity 1 25 0 277 307 59 0 chr6 136127631 136127732 -46287510 - L2 LINE L2 -8 3305 3199 2125 72 0 0 chr6 136128178 136128454 -46286788 - L1PA8 LINE L1 0 6172 5897 335 296 40 24 chr6 136129418 136129543 -46285699 + L2 LINE L2 2547 2673 -641 481 337 76 50 chr6 136129580 136130064 -46285178 + L2 LINE L2 2216 2712 -602 1817 143 26 0 chr6 136131027 136131300 -46283942 - AluSx SINE Alu -19 293 14 310 251 86 28 chr6 136131743 136131871 -46283371 - MIR SINE MIR -70 138 2 312 339 8 8 chr6 136132091 136132209 -46283033 + HAL1b LINE L1 492 609 -739 275 170 0 0 chr6 136132275 136132328 -46282914 + L1MA7 LINE L1 6230 6282 -9 21 0 0 0 chr6 136132329 136132350 -46282892 + AT_rich Low_complexity Low_complexity 1 21 0 371 344 77 49 chr6 136132794 136133184 -46282058 + L1MC/D LINE L1 5327 5727 -2081 2167 78 0 69 chr6 136134420 136134772 -46280470 + AluSq SINE Alu 1 331 0 24 0 0 0 chr6 136135105 136135129 -46280113 + AT_rich Low_complexity Low_complexity 1 24 0 224 211 0 0 chr6 136135754 136135792 -46279450 + polypurine Low_complexity Low_complexity 3 40 0 2208 106 24 0 chr6 136137177 136137469 -46277773 - AluSp SINE Alu -14 299 1 338 298 35 26 chr6 136137578 136137692 -46277550 - MIR3 SINE MIR -35 173 59 198 0 0 0 chr6 136138162 136138184 -46277058 + (A)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr6 136138777 136138800 -46276442 + AT_rich Low_complexity Low_complexity 1 23 0 249 108 0 0 chr6 136138905 136138942 -46276300 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 57 0 0 chr6 136140354 136140389 -46274853 + AT_rich Low_complexity Low_complexity 1 35 0 390 333 32 13 chr6 136141259 136141415 -46273827 - MER5B DNA MER1_type 0 178 20 424 163 133 114 chr6 136141415 136141519 -46273723 - MER5A DNA MER1_type -4 185 75 2497 72 0 3 chr6 136141519 136141826 -46273416 - AluSp SINE Alu -7 306 1 424 163 133 114 chr6 136141826 136141887 -46273355 - MER5A DNA MER1_type -114 75 17 351 0 0 0 chr6 136141977 136142016 -46273226 + (CA)n Simple_repeat Simple_repeat 1 39 0 205 183 100 0 chr6 136142136 136142196 -46273046 + L2 LINE L2 3206 3271 -1 222 191 43 0 chr6 136143115 136143162 -46272080 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 432 284 126 11 chr6 136143252 136143435 -46271807 + MIR3 SINE MIR 5 208 0 444 229 65 130 chr6 136144263 136144548 -46270694 - MLT1I LTR MaLR -49 360 105 2045 100 0 0 chr6 136144548 136144808 -46270434 + AluSx SINE Alu 34 293 -19 444 229 65 130 chr6 136144808 136144907 -46270335 - MLT1I LTR MaLR -304 105 1 1651 211 8 17 chr6 136146591 136146947 -46268295 - MLT1A1 LTR MaLR -12 353 1 557 218 95 26 chr6 136147774 136147960 -46267282 + MLT1H LTR MaLR 1 240 -309 426 182 138 82 chr6 136148025 136148184 -46267058 + MLT1H LTR MaLR 382 549 0 252 283 53 44 chr6 136149224 136149337 -46265905 + L2 LINE L2 3180 3293 -20 207 146 0 127 chr6 136149625 136149680 -46265562 + L2 LINE L2 3266 3313 0 182 345 81 0 chr6 136150100 136150187 -46265055 + MIR SINE MIR 2 95 -167 411 312 89 28 chr6 136150206 136150453 -46264789 - LTR33 LTR ERVL -55 466 205 227 230 14 95 chr6 136150631 136150705 -46264537 + MIR SINE MIR 84 141 -67 2333 98 0 0 chr6 136150772 136151069 -46264173 - AluY SINE Alu -14 297 1 396 224 0 13 chr6 136151698 136151774 -46263468 - MIR3 SINE MIR -19 189 115 1135 91 4 30 chr6 136154914 136155147 -46260095 + (GAAA)n Simple_repeat Simple_repeat 2 228 0 189 195 0 0 chr6 136155684 136155725 -46259517 + C-rich Low_complexity Low_complexity 3 43 0 353 296 114 78 chr6 136155725 136155937 -46259305 + L1M2 LINE L1 897 1131 -5718 207 69 0 0 chr6 136155937 136155966 -46259276 + (CCG)n Simple_repeat Simple_repeat 3 31 0 353 296 114 78 chr6 136155966 136156138 -46259104 + L1M2 LINE L1 1131 1295 -5554 23 33 0 0 chr6 136156228 136156258 -46258984 + AT_rich Low_complexity Low_complexity 1 30 0 256 308 55 0 chr6 136159603 136159694 -46255548 - MIR SINE MIR -97 165 70 29 0 0 0 chr6 136162120 136162149 -46253093 + AT_rich Low_complexity Low_complexity 1 29 0 406 286 24 77 chr6 136162475 136162643 -46252599 + MIR3 SINE MIR 20 178 -30 281 258 113 41 chr6 136163863 136163960 -46251282 - L3 LINE CR1 -11 1566 1463 226 308 26 43 chr6 136164653 136164770 -46250472 - MIR SINE MIR -30 232 118 571 238 0 136 chr6 136165410 136165616 -46249626 + MER5B DNA MER1_type 1 178 0 323 312 99 5 chr6 136171866 136172019 -46243223 - MIR SINE MIR -59 203 39 2389 80 10 3 chr6 136172263 136172563 -46242679 + AluSc SINE Alu 1 302 -7 1472 208 7 0 chr6 136172777 136173061 -46242181 + AluJb SINE Alu 12 297 -15 342 333 136 28 chr6 136175244 136175712 -46239530 + L2 LINE L2 2782 3304 -9 304 337 0 0 chr6 136176348 136176431 -46238811 + (TG)n Simple_repeat Simple_repeat 2 84 0 208 206 41 21 chr6 136177505 136177602 -46237640 + (TA)n Simple_repeat Simple_repeat 2 100 0 627 271 40 76 chr6 136178572 136178900 -46236342 + L2 LINE L2 2830 3145 -168 * 686 254 65 22 chr6 136178882 136179114 -46236128 + MIR SINE MIR 21 262 0 452 240 41 41 chr6 136179109 136179255 -46235987 + L2 LINE L2 3168 3313 0 * 207 0 0 0 chr6 136179372 136179395 -46235847 + (TA)n Simple_repeat Simple_repeat 2 24 0 35 54 0 0 chr6 136180044 136180100 -46235142 + AT_rich Low_complexity Low_complexity 1 56 0 764 154 53 64 chr6 136181636 136181824 -46233418 + MER5A DNA MER1_type 1 186 -3 195 184 0 0 chr6 136182840 136182878 -46232364 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 731 241 0 0 chr6 136182885 136183030 -46232212 - AluJb SINE Alu -31 281 137 359 348 32 32 chr6 136183578 136183736 -46231506 - L2 LINE L2 0 3272 3115 629 236 70 0 chr6 136185261 136185418 -46229824 - MLT1H LTR MaLR 0 549 382 855 237 15 32 chr6 136185452 136185706 -46229536 - MLT1H LTR MaLR -331 224 6 560 242 16 8 chr6 136185949 136186073 -46229169 - L2 LINE L2 -1 3312 3188 399 245 4 30 chr6 136189178 136189321 -46225921 - L1MC4a LINE L1 -301 5863 5716 848 257 49 13 chr6 136189406 136189632 -46225610 + MIR SINE MIR 18 251 -11 352 273 101 25 chr6 136189676 136189874 -46225368 - L1MC4a LINE L1 -2191 5617 5405 1302 87 5 10 chr6 136190096 136190114 -46225128 - L1P4 LINE L1 -497 5677 5660 3341 107 32 0 chr6 136190114 136190610 -46224632 - L1PA11 LINE L1 -1 6173 5662 * 7244 38 7 1 chr6 136190607 136192032 -46223210 - L1PA5 LINE L1 -2 6152 4716 1302 87 5 10 chr6 136190610 136192210 -46223032 - L1P4 LINE L1 -514 5660 5484 242 210 48 32 chr6 136192324 136192386 -46222856 - L2 LINE L2 -4 3268 3206 1579 183 43 14 chr6 136192782 136193131 -46222111 + L1MB3 LINE L1 5823 6181 -2 23 0 0 0 chr6 136193960 136193983 -46221259 + AT_rich Low_complexity Low_complexity 1 23 0 191 103 26 0 chr6 136194277 136194316 -46220926 + (TA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr6 136194762 136194790 -46220452 + AT_rich Low_complexity Low_complexity 1 28 0 319 222 142 68 chr6 136194799 136194961 -46220281 - MIR SINE MIR -56 206 33 21 36 0 0 chr6 136197251 136197279 -46217963 + AT_rich Low_complexity Low_complexity 1 28 0 2227 135 15 76 chr6 136197602 136198062 -46217180 - MSTB1 LTR MaLR 0 432 1 1800 97 50 0 chr6 136199567 136199825 -46215417 - THE1C LTR MaLR 0 375 105 288 209 0 0 chr6 136250328 136250419 -46164823 + (TA)n Simple_repeat Simple_repeat 1 91 0 2003 92 28 21 chr6 136250451 136250735 -46164507 - AluSc SINE Alu -23 286 1 264 59 0 0 chr6 136250743 136250777 -46164465 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 953 254 213 33 chr6 136250779 136251558 -46163684 - L2 LINE L2 -12 3301 2370 595 190 128 28 chr6 136251554 136251733 -46163509 + MIR SINE MIR 50 246 -16 * 198 284 60 0 chr6 136255358 136255425 -46159817 - MIR SINE MIR -74 134 64 1894 168 74 36 chr6 136256705 136256889 -46158353 + Tigger2a DNA MER2_type 2 177 -2531 2331 99 0 0 chr6 136256889 136257182 -46158060 - AluSc SINE Alu -16 293 1 1894 168 74 36 chr6 136257182 136257414 -46157828 + Tigger2a DNA MER2_type 177 434 0 1147 176 35 31 chr6 136257629 136257887 -46157355 + MER33 DNA MER1_type 1 251 -73 639 191 0 16 chr6 136257891 136258017 -46157225 - FLAM_C SINE Alu -19 124 1 427 122 40 0 chr6 136258017 136258091 -46157151 + MER33 DNA MER1_type 242 318 -6 441 263 83 8 chr6 136258151 136258284 -46156958 + MIR SINE MIR 49 191 -71 340 280 21 0 chr6 136258336 136258429 -46156813 - MER5A DNA MER1_type -84 105 11 954 154 240 0 chr6 136258799 136259007 -46156235 - Tigger2 DNA MER2_type 0 2718 2461 3168 155 142 9 chr6 136259061 136259718 -46155524 - Tigger2 DNA MER2_type -1974 744 1 599 250 37 12 chr6 136260859 136261023 -46154219 + FRAM SINE Alu 1 168 -8 690 160 0 0 chr6 136262105 136262211 -46153031 + FRAM SINE Alu 26 131 -45 192 338 50 7 chr6 136262318 136262457 -46152785 - L2 LINE L2 -697 2617 2473 227 374 138 3 chr6 136262538 136262907 -46152335 - L2 LINE L2 -2179 1135 717 381 315 79 51 chr6 136262908 136263086 -46152156 + MER5A DNA MER1_type 3 185 -4 3100 62 59 5 chr6 136263520 136263941 -46151301 - MLT2A1 LTR ERVL 0 444 1 4468 209 94 9 chr6 136264304 136266224 -46149018 - L1MB4 LINE L1 -50 6130 4053 22 0 0 0 chr6 136267232 136267254 -46147988 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr6 136267325 136267350 -46147892 + AT_rich Low_complexity Low_complexity 1 25 0 513 324 107 14 chr6 136268298 136268588 -46146654 + L2 LINE L2 2044 2360 -954 1415 97 111 0 chr6 136270851 136271058 -46144184 - MER30 DNA MER1_type 0 230 1 348 286 0 22 chr6 136271947 136272038 -46143204 + L2 LINE L2 3182 3270 -2 191 357 122 0 chr6 136272239 136272337 -46142905 - MIR SINE MIR -68 140 31 22 0 0 0 chr6 136274392 136274414 -46140828 + AT_rich Low_complexity Low_complexity 1 22 0 753 284 184 40 chr6 136276767 136277306 -46137936 - L2 LINE L2 -3 3310 2677 272 191 191 0 chr6 136277362 136277425 -46137817 - MIR SINE MIR -155 107 33 239 188 328 0 chr6 136277457 136277521 -46137721 - L2 LINE L2 -663 2651 2567 24 0 0 0 chr6 136278585 136278609 -46136633 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 136278714 136278735 -46136507 + AT_rich Low_complexity Low_complexity 1 21 0 213 341 0 11 chr6 136279444 136279532 -46135710 + MIR SINE MIR 4 90 -172 216 118 29 0 chr6 136279599 136279633 -46135609 + MIR SINE MIR 87 121 -141 2109 91 0 0 chr6 136281021 136281284 -46133958 - AluSx SINE Alu -16 296 34 651 276 37 22 chr6 136281660 136281928 -46133314 + L1ME LINE L1 5469 5740 -381 1061 265 64 70 chr6 136281984 136282269 -46132973 + L1MC/D LINE L1 4875 5160 -1292 1719 116 8 23 chr6 136282269 136282527 -46132715 - AluSg SINE Alu -22 288 35 1061 265 64 70 chr6 136282527 136282798 -46132444 + L1MC/D LINE L1 5160 5431 -1021 1877 152 23 13 chr6 136282798 136283107 -46132135 + AluJb SINE Alu 1 312 0 1061 265 64 70 chr6 136283107 136283391 -46131851 + L1MC/D LINE L1 5431 5709 -743 518 194 90 15 chr6 136283590 136283724 -46131518 + LTR25 LTR ERV1 220 363 -431 302 233 11 33 chr6 136283757 136283847 -46131395 + MER61E LTR ERV1 77 164 -405 1104 136 22 11 chr6 136283869 136284053 -46131189 + MER61E LTR ERV1 341 526 -43 453 243 71 0 chr6 136284168 136284308 -46130934 + L1MC4 LINE L1 7893 8042 0 5910 149 35 52 chr6 136284665 136284948 -46130294 + Tigger3b DNA MER2_type 1 287 -2741 1814 132 35 3 chr6 136284948 136285235 -46130007 - AluJo SINE Alu -16 296 1 5910 149 35 52 chr6 136285235 136286203 -46129039 + Tigger3b DNA MER2_type 287 1231 0 2587 222 48 15 chr6 136286381 136286981 -46128261 + MLT1E2 LTR MaLR 2 621 -5 575 169 21 49 chr6 136287811 136287953 -46127289 - MER5C DNA MER1_type 0 324 187 21 0 0 0 chr6 136288130 136288151 -46127091 + AT_rich Low_complexity Low_complexity 1 21 0 2380 89 0 0 chr6 136288465 136288768 -46126474 - AluSq SINE Alu -10 303 1 21 57 0 0 chr6 136288802 136288837 -46126405 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr6 136289188 136289223 -46126019 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr6 136289300 136289336 -46125906 + AT_rich Low_complexity Low_complexity 1 36 0 2810 127 0 0 chr6 136289392 136289809 -46125433 + Tigger1 DNA MER2_type 566 982 -1436 13394 157 39 28 chr6 136289825 136292450 -46122792 + L1M1 LINE L1 1313 3907 -3658 2128 124 159 5 chr6 136292450 136292821 -46122421 + MSTA LTR MaLR 1 428 0 13394 157 39 28 chr6 136292821 136293419 -46121823 + L1M1 LINE L1 3907 4497 -3068 2193 105 0 55 chr6 136293419 136293744 -46121498 + AluSg SINE Alu 3 309 -1 13394 157 39 28 chr6 136293744 136295549 -46119693 + L1M1 LINE L1 4497 6411 -1154 513 0 0 0 chr6 136295549 136295606 -46119636 + (CA)n Simple_repeat Simple_repeat 2 58 0 13394 157 39 28 chr6 136295606 136295711 -46119531 + L1M1 LINE L1 6411 6513 -1052 2108 143 124 11 chr6 136295725 136296103 -46119139 - MSTA LTR MaLR -6 422 2 2271 98 28 22 chr6 136296103 136296461 -46118781 + L1MA2 LINE L1 5945 6304 0 4230 149 58 9 chr6 136296500 136297239 -46118003 + Tigger1 DNA MER2_type 1644 2418 0 641 250 41 18 chr6 136297239 136297459 -46117783 + L1ME2 LINE L1 2212 2436 -3960 2373 72 16 10 chr6 136297460 136297799 -46117443 + AluSg SINE Alu 1 341 0 846 244 8 26 chr6 136297834 136298068 -46117174 + L1MC4a LINE L1 7572 7801 -7 295 169 84 0 chr6 136298089 136298160 -46117082 + L1M1 LINE L1 6571 6647 -918 1893 212 62 42 chr6 136298268 136298868 -46116374 + L1ME2 LINE L1 5324 5935 -298 1120 240 18 52 chr6 136298863 136299263 -46115979 + L1ME2 LINE L1 5769 6154 -10 * 1976 146 4 0 chr6 136299266 136299571 -46115671 - AluSx SINE Alu 0 306 1 497 346 60 5 chr6 136299914 136300131 -46115111 - MIR SINE MIR -28 234 6 23 33 0 0 chr6 136302610 136302640 -46112602 + AT_rich Low_complexity Low_complexity 1 30 0 277 338 73 35 chr6 136303012 136303509 -46111733 + L2 LINE L2 1764 2357 -957 * 316 296 52 20 chr6 136303499 136303615 -46111627 + MIR SINE MIR 28 146 -63 226 366 32 48 chr6 136303753 136303939 -46111303 + L2 LINE L2 2440 2622 -692 536 180 11 0 chr6 136303953 136304042 -46111200 - 5S rRNA rRNA -31 90 1 180 386 90 30 chr6 136304085 136304352 -46110890 + L2 LINE L2 2695 2977 -337 668 273 39 19 chr6 136305234 136305490 -46109752 + MIR SINE MIR 2 262 0 2118 107 10 0 chr6 136306096 136306385 -46108857 - AluSx SINE Alu -20 292 1 26 30 0 0 chr6 136306746 136306779 -46108463 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr6 136307139 136307167 -46108075 + AT_rich Low_complexity Low_complexity 1 28 0 2233 120 0 0 chr6 136307789 136308090 -46107152 + AluSx SINE Alu 1 301 -11 2264 105 0 3 chr6 136308092 136308387 -46106855 + AluSx SINE Alu 1 294 -18 258 103 17 35 chr6 136308687 136308745 -46106497 + (TA)n Simple_repeat Simple_repeat 1 57 0 1839 144 93 12 chr6 136309007 136309340 -46105902 + MER46B DNA MER2_type 2 236 0 204 284 84 53 chr6 136309347 136309442 -46105800 - MIR3 SINE MIR -102 106 9 557 277 74 30 chr6 136309549 136309751 -46105491 - MIR SINE MIR -37 225 15 181 148 19 37 chr6 136309835 136309889 -46105353 + T-rich Low_complexity Low_complexity 1 53 0 183 241 138 0 chr6 136310021 136310079 -46105163 - MIR SINE MIR -13 249 184 288 268 176 20 chr6 136310370 136310523 -46104719 - MIR SINE MIR -50 212 36 2376 167 166 128 chr6 136310614 136310995 -46104247 + L1MC3 LINE L1 6705 7070 -715 395 261 0 23 chr6 136310995 136311083 -46104159 + MLT1F1 LTR MaLR 40 125 -442 2376 167 166 128 chr6 136311083 136311486 -46103756 + L1MC3 LINE L1 7070 7609 -176 670 203 13 0 chr6 136311491 136311644 -46103598 - L1MA10 LINE L1 0 6334 6180 21 0 0 0 chr6 136311652 136311673 -46103569 + AT_rich Low_complexity Low_complexity 1 21 0 425 155 23 139 chr6 136311704 136311780 -46103462 - L1MA9 LINE L1 -294 6018 5961 1774 168 0 7 chr6 136311780 136312065 -46103177 - AluJo SINE Alu -23 289 7 425 155 23 139 chr6 136312065 136312117 -46103125 - L1MA9 LINE L1 -351 5961 5905 * 749 184 34 48 chr6 136312100 136312150 -46103092 + L1MC3 LINE L1 7582 7631 -154 1898 141 138 21 chr6 136312150 136312533 -46102709 + MSTA LTR MaLR 1 428 0 749 184 34 48 chr6 136312533 136312689 -46102553 + L1MC3 LINE L1 7631 7785 0 213 239 60 45 chr6 136313314 136313381 -46101861 - L2 LINE L2 -8 3305 3238 652 167 42 8 chr6 136314310 136314430 -46100812 + Tigger3(Golem) DNA MER2_type 31 154 -2875 * 1130 196 39 0 chr6 136314426 136314630 -46100612 + Tigger3(Golem) DNA MER2_type 2827 3038 0 2453 71 0 3 chr6 136314813 136315123 -46100119 + AluY SINE Alu 1 309 -2 1315 166 44 50 chr6 136315609 136315928 -46099314 + MER33 DNA MER1_type 8 324 0 1952 148 17 0 chr6 136317216 136317514 -46097728 - AluSq SINE Alu -10 303 1 733 222 133 12 chr6 136318078 136318326 -46096916 - L1ME3A LINE L1 -11 6159 5882 1468 138 0 9 chr6 136318402 136318627 -46096615 - MER4A LTR ERV1 0 664 442 2827 101 6 91 chr6 136318646 136318876 -46096366 - MER4A LTR ERV1 -200 464 299 1741 168 7 3 chr6 136318876 136319161 -46096081 - AluSq SINE Alu -27 286 1 2827 101 6 91 chr6 136319161 136319437 -46095805 - MER4A LTR ERV1 -365 299 1 685 216 60 12 chr6 136319438 136319605 -46095637 - L1ME3A LINE L1 -367 5795 5621 441 0 0 0 chr6 136319735 136319784 -46095458 + (CA)n Simple_repeat Simple_repeat 2 50 0 974 237 100 6 chr6 136319803 136320132 -46095110 - L1ME3A LINE L1 -540 5622 5263 191 309 129 48 chr6 136320164 136320536 -46094706 + L2 LINE L2 2227 2628 -686 5549 62 24 5 chr6 136323035 136323787 -46091455 + MER4E LTR ERV1 1 766 0 2133 141 0 6 chr6 136325559 136325872 -46089370 + AluSx SINE Alu 1 311 -1 214 125 50 0 chr6 136326432 136326472 -46088770 + CT-rich Low_complexity Low_complexity 2 43 0 2007 176 203 27 chr6 136330152 136330710 -46084532 - MER67B LTR ERV1 0 661 6 972 254 121 45 chr6 136330907 136331371 -46083871 + L1M3e LINE L1 1032 1530 -5500 5103 131 56 48 chr6 136331564 136331781 -46083461 + L1MA6 LINE L1 5182 5396 -904 1659 155 32 7 chr6 136331781 136332065 -46083177 + AluJo SINE Alu 1 291 -21 5103 131 56 48 chr6 136332065 136332249 -46082993 + L1MA6 LINE L1 5396 5577 -723 1727 122 108 7 chr6 136332249 136332527 -46082715 + AluSg SINE Alu 1 306 -4 5103 131 56 48 chr6 136332527 136333138 -46082104 + L1MA6 LINE L1 5577 6204 -96 235 158 105 0 chr6 136333140 136333197 -46082045 + L1MA5 LINE L1 6238 6300 0 221 274 0 16 chr6 136333981 136334043 -46081199 + CT-rich Low_complexity Low_complexity 2 62 0 1968 246 107 51 chr6 136334279 136334354 -46080888 + L1MA4A LINE L1 -723 4294966642 -6960 2165 110 14 0 chr6 136334354 136334645 -46080597 - AluSq SINE Alu -18 295 1 1968 246 107 51 chr6 136334645 136335450 -46079792 + L1MA4A LINE L1 -654 206 -6100 2457 239 97 34 chr6 136335450 136335749 -46079493 + L1MA4A LINE L1 975 1254 -5128 2092 119 12 44 chr6 136335749 136336068 -46079174 + AluSg SINE Alu 2 310 0 2457 239 97 34 chr6 136336068 136337249 -46077993 + L1MA4A LINE L1 1254 2286 -4096 2048 125 0 4 chr6 136337249 136337530 -46077712 + AluSx SINE Alu 1 280 -32 2457 239 97 34 chr6 136337530 136337850 -46077392 + L1MA4A LINE L1 2286 2585 -3797 387 0 0 0 chr6 136337850 136337893 -46077349 + (TG)n Simple_repeat Simple_repeat 2 44 0 243 0 0 0 chr6 136337892 136337919 -46077323 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 2619 46 3 0 chr6 136337919 136338224 -46077018 - AluY SINE Alu -5 306 1 2146 106 10 3 chr6 136338224 136338517 -46076725 - AluSq SINE Alu -18 295 1 6569 208 59 25 chr6 136338529 136339416 -46075826 + L1MA4A LINE L1 3023 3878 -2504 2145 128 120 48 chr6 136339416 136339770 -46075472 - MSTC LTR MaLR 0 428 39 2285 82 0 3 chr6 136339770 136340072 -46075170 + AluY SINE Alu 1 301 0 2145 128 120 48 chr6 136340072 136340115 -46075127 - MSTC LTR MaLR -389 39 1 6569 208 59 25 chr6 136340115 136340456 -46074786 + L1MA4A LINE L1 3878 4206 -2176 2277 101 7 7 chr6 136340456 136340762 -46074480 - AluSc SINE Alu -3 306 1 6569 208 59 25 chr6 136340762 136341734 -46073508 + L1MA4A LINE L1 4206 5520 -862 2155 106 0 0 chr6 136342365 136342648 -46072594 + AluSg SINE Alu 1 283 -27 192 77 0 0 chr6 136342652 136342678 -46072564 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 657 176 4 105 chr6 136343591 136343872 -46071370 + MER31-int LTR ERV1 1313 1686 -3250 265 214 204 48 chr6 136344771 136344874 -46070368 + L2 LINE L2 3179 3297 -16 3870 204 23 68 chr6 136344942 136345303 -46069939 + L1MA4A LINE L1 5501 5877 -662 2245 95 14 3 chr6 136345303 136345599 -46069643 - AluSp SINE Alu -10 303 5 3870 204 23 68 chr6 136345599 136345671 -46069571 + L1MA4A LINE L1 5877 5951 -588 2297 93 7 0 chr6 136345671 136345972 -46069270 - AluSq SINE Alu -10 303 1 3870 204 23 68 chr6 136345972 136346598 -46068644 + L1MA4A LINE L1 5951 6513 -26 555 281 17 17 chr6 136346616 136346854 -46068388 + L1M3e LINE L1 3136 3373 -3009 2068 143 48 40 chr6 136346861 136347233 -46068009 + THE1C LTR MaLR 1 375 0 2790 133 4 17 chr6 136347233 136347452 -46067790 + THE1C-int LTR MaLR 1 221 -1359 3827 122 30 4 chr6 136347452 136347992 -46067250 - MER41C LTR ERV1 0 554 1 2790 133 4 17 chr6 136347992 136348242 -46067000 + THE1C-int LTR MaLR 221 400 -1180 2304 75 38 0 chr6 136348242 136348534 -46066708 + AluY SINE Alu 1 303 -8 2790 133 4 17 chr6 136348534 136348565 -46066677 + THE1C-int LTR MaLR 400 430 -1150 7589 131 9 13 chr6 136349525 136350681 -46064561 + THE1C-int LTR MaLR 430 1580 0 857 159 77 28 chr6 136350681 136350863 -46064379 + THE1C LTR MaLR 1 191 -184 868 161 150 36 chr6 136350866 136351059 -46064183 - MER66B-int LTR ERV1 -5248 1428 1214 785 230 58 11 chr6 136351149 136351323 -46063919 - MER66B-int LTR ERV1 -3574 3102 2921 4634 171 86 56 chr6 136351378 136352445 -46062797 - MER66B-int LTR ERV1 -5563 1113 15 2920 167 43 4 chr6 136352562 136353030 -46062212 - MER66B LTR ERV1 0 486 1 3101 191 21 7 chr6 136353030 136353990 -46061252 - L1MB7 LINE L1 -320 5864 4890 * 8139 205 62 50 chr6 136353986 136356838 -46058404 - L1MA6 LINE L1 0 7719 4904 316 229 14 0 chr6 136356838 136356908 -46058334 - MLT1A2 LTR MaLR -303 71 1 8139 205 62 50 chr6 136356908 136356973 -46058269 - L1MA6 LINE L1 -2815 4904 4841 1911 215 34 3 chr6 136356973 136357327 -46057915 + MLT1A1 LTR MaLR 1 365 0 8139 205 62 50 chr6 136357327 136358421 -46056821 - L1MA6 LINE L1 -2878 4841 3601 2255 113 3 3 chr6 136358421 136358723 -46056519 - AluSc SINE Alu -7 302 1 8139 205 62 50 chr6 136358723 136359251 -46055991 - L1MA6 LINE L1 -4118 3601 3081 2215 120 7 0 chr6 136359454 136359762 -46055480 - AluSg SINE Alu 0 310 1 655 163 23 8 chr6 136359830 136359959 -46055283 + LTR8A LTR ERV1 4 134 -593 1168 96 0 0 chr6 136360010 136360156 -46055086 - AluSg1 SINE Alu -163 146 1 1690 178 76 18 chr6 136360161 136360667 -46054575 + LTR8A LTR ERV1 152 727 0 245 238 62 12 chr6 136360667 136360747 -46054495 - L1MA6 LINE L1 -4577 2988 2905 * 987 222 48 85 chr6 136360734 136360774 -46054468 - L1M4 LINE L1 -4779 2178 2138 2217 92 0 3 chr6 136360774 136361085 -46054157 + AluSg SINE Alu 1 310 0 987 222 48 85 chr6 136361085 136361513 -46053729 - L1M4 LINE L1 -4819 2138 1636 2153 127 3 0 chr6 136361513 136361812 -46053430 - AluSp SINE Alu -13 300 1 987 222 48 85 chr6 136361812 136361881 -46053361 - L1M4 LINE L1 -5321 1636 1566 2327 92 10 10 chr6 136361893 136362198 -46053044 - AluY SINE Alu -6 305 1 1111 188 208 32 chr6 136362201 136362542 -46052700 - L1M4 LINE L1 -5434 1425 1025 1168 72 0 0 chr6 136362544 136362683 -46052559 - AluSq/x SINE Alu -173 139 1 857 107 0 0 chr6 136362683 136362804 -46052438 + MER41A LTR ERV1 434 554 0 399 322 43 29 chr6 136362804 136363011 -46052231 - LTR16C LTR ERVL -135 356 147 2337 98 0 0 chr6 136363941 136364236 -46051006 - AluSx SINE Alu -17 295 1 23 0 0 0 chr6 136364239 136364262 -46050980 + AT_rich Low_complexity Low_complexity 1 23 0 989 127 0 0 chr6 136364371 136364505 -46050737 + AluSc SINE Alu 1 134 -175 2558 59 0 0 chr6 136364505 136364808 -46050434 + AluY SINE Alu 1 303 -8 7589 131 9 13 chr6 136365799 136366955 -46048287 + THE1C-int LTR MaLR 430 1580 0 857 159 77 28 chr6 136366955 136367137 -46048105 + THE1C LTR MaLR 1 191 -184 868 161 150 36 chr6 136367140 136367333 -46047909 - MER66B-int LTR ERV1 -5248 1428 1214 785 230 58 11 chr6 136367423 136367597 -46047645 - MER66B-int LTR ERV1 -3574 3102 2921 4634 171 86 56 chr6 136367652 136368719 -46046523 - MER66B-int LTR ERV1 -5563 1113 15 2892 169 43 4 chr6 136368836 136369304 -46045938 - MER66B LTR ERV1 0 486 1 3101 191 18 7 chr6 136369304 136370257 -46044985 - L1MB7 LINE L1 -320 5864 4901 1921 152 0 0 chr6 136370260 136370570 -46044672 - L1MA6 LINE L1 0 6300 5991 1689 78 87 0 chr6 136370671 136370902 -46044340 - AluSq SINE Alu -62 251 1 617 182 19 13 chr6 136371510 136371664 -46043578 - Charlie5 DNA MER1_type -83 2529 2375 * 970 204 53 15 chr6 136371628 136371893 -46043349 + Zaphod DNA AcHobo 3612 3886 -145 419 191 0 0 chr6 136371893 136371961 -46043281 + MER115 DNA AcHobo 626 693 0 209 248 94 94 chr6 136372217 136372281 -46042961 - MIR SINE MIR -72 136 69 2206 88 3 11 chr6 136372281 136372591 -46042651 + AluSp SINE Alu 2 309 0 209 248 94 94 chr6 136372591 136372642 -46042600 - MIR SINE MIR -138 70 20 1399 278 56 27 chr6 136373306 136373589 -46041653 + L2 LINE L2 2670 2943 -370 1560 105 59 9 chr6 136373589 136373808 -46041434 - MER30 DNA MER1_type 0 230 1 1399 278 56 27 chr6 136373808 136374147 -46041095 + L2 LINE L2 2943 3311 -2 4154 178 57 29 chr6 136374405 136375176 -46040066 - MER54B LTR ERVL 0 793 1 234 0 0 0 chr6 136376190 136376216 -46039026 + (CAA)n Simple_repeat Simple_repeat 2 27 0 26361 75 4 5 chr6 136376268 136379880 -46035362 - L1PA6 LINE L1 -1 6153 2547 2306 78 0 0 chr6 136379880 136380199 -46035043 - AluY SINE Alu 0 324 6 26361 75 4 5 chr6 136380199 136380914 -46034328 - L1PA6 LINE L1 -3607 2547 1832 2006 123 3 35 chr6 136380914 136381230 -46034012 + AluY SINE Alu 1 306 -5 2494 77 0 0 chr6 136381372 136381683 -46033559 - AluY SINE Alu 0 311 1 1293 219 111 46 chr6 136381684 136382123 -46033119 - L1MDa LINE L1 -4539 2001 1527 6310 69 1 94 chr6 136382123 136383034 -46032208 + LTR12 LTR ERV1 1 826 0 1293 219 111 46 chr6 136383034 136383073 -46032169 - L1MDa LINE L1 -5013 1527 1492 319 188 16 0 chr6 136383072 136383136 -46032106 - L1MDa LINE L1 -2291 4249 4185 * 234 151 41 27 chr6 136383138 136383211 -46032031 + (TA)n Simple_repeat Simple_repeat 1 74 0 1333 256 36 60 chr6 136383214 136383368 -46031874 - L1MDa LINE L1 -2381 4159 4003 1690 172 3 10 chr6 136383368 136383658 -46031584 + AluJb SINE Alu 9 296 -16 1333 256 36 60 chr6 136383658 136384225 -46031017 - L1MDa LINE L1 -2537 4003 3455 1227 229 91 7 chr6 136384216 136384773 -46030469 - L1MDa LINE L1 -3417 3123 2507 * 2072 127 3 10 chr6 136384773 136385080 -46030162 - AluSg SINE Alu -5 305 1 1227 229 91 7 chr6 136385080 136385104 -46030138 - L1MDa LINE L1 -4033 2507 2486 * 1253 187 3 53 chr6 136385095 136385215 -46030027 - L1M4 LINE L1 -876 5270 5146 1624 122 0 19 chr6 136385215 136385477 -46029765 + AluY SINE Alu 39 295 -16 1253 187 3 53 chr6 136385477 136385714 -46029528 - L1M4 LINE L1 -1000 5146 4931 1963 138 0 0 chr6 136385754 136386030 -46029212 + AluSx SINE Alu 1 276 -36 195 42 0 0 chr6 136386034 136386058 -46029184 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2590 214 70 27 chr6 136386058 136386914 -46028328 - L1M4 LINE L1 -1727 4419 3527 225 216 93 0 chr6 136387186 136387283 -46027959 - LTR33A LTR ERVL -2 521 416 2437 66 7 3 chr6 136387467 136387768 -46027474 + AluY SINE Alu 1 302 -9 2197 90 0 27 chr6 136388561 136388696 -46026546 + AluSg SINE Alu 1 138 -172 2328 103 3 0 chr6 136388696 136388998 -46026244 + AluSp SINE Alu 1 303 -10 2197 90 0 27 chr6 136388998 136389163 -46026079 + AluSg SINE Alu 138 293 -17 1635 176 10 41 chr6 136389206 136389501 -46025741 + AluJo SINE Alu 1 286 -26 26 30 0 0 chr6 136389517 136389550 -46025692 + AT_rich Low_complexity Low_complexity 1 33 0 1958 128 29 26 chr6 136389581 136389887 -46025355 + AluSg SINE Alu 1 307 -3 385 211 11 0 chr6 136391103 136391198 -46024044 + MER53 DNA DNA 1 96 -93 414 171 72 36 chr6 136391338 136391449 -46023793 - MER94 DNA DNA -9 125 11 12320 180 36 14 chr6 136391674 136392118 -46023124 + L1 LINE L1 2125 2558 -3588 2174 121 159 5 chr6 136392118 136392489 -46022753 + MSTA LTR MaLR 1 428 0 12320 180 36 14 chr6 136392489 136393085 -46022157 + L1 LINE L1 2558 3139 -3007 2199 110 0 55 chr6 136393085 136393412 -46021830 + AluSg SINE Alu 1 309 -1 12320 180 36 14 chr6 136393412 136395180 -46020062 + L1 LINE L1 3139 4996 -1150 423 0 0 0 chr6 136395216 136395263 -46019979 + (CA)n Simple_repeat Simple_repeat 2 48 0 313 267 20 0 chr6 136395267 136395368 -46019874 + L1 LINE L1 4992 5094 -1052 1970 143 124 11 chr6 136395382 136395760 -46019482 - MSTA LTR MaLR -6 422 2 2250 98 28 22 chr6 136395760 136396118 -46019124 + L1MA2 LINE L1 5945 6304 0 3985 149 58 9 chr6 136396157 136396896 -46018346 + Tigger1 DNA MER2_type 1644 2418 0 583 250 41 18 chr6 136396896 136397116 -46018126 + L1MEc LINE L1 2212 2436 -3960 2291 96 0 10 chr6 136397117 136397419 -46017823 + AluSg SINE Alu 1 299 -11 930 78 0 0 chr6 136397441 136397585 -46017657 + AluSp/q SINE Alu 171 314 0 388 322 80 30 chr6 136398022 136398221 -46017021 - L2 LINE L2 -212 3060 2852 1741 105 94 0 chr6 136398561 136398838 -46016404 + AluSx SINE Alu 1 303 -9 2320 174 34 5 chr6 136399114 136399528 -46015714 - MSTB LTR MaLR 0 426 1 335 277 91 0 chr6 136399945 136400087 -46015155 + L1M4c LINE L1 1515 1875 -868 477 34 0 0 chr6 136400562 136400621 -46014621 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1899 134 14 3 chr6 136400621 136400904 -46014338 - AluSx SINE Alu -23 289 1 182 306 0 0 chr6 136401058 136401107 -46014135 + L2 LINE L2 3259 3307 -6 1876 169 3 28 chr6 136401440 136401759 -46013483 - AluJb SINE Alu -1 311 1 1075 61 8 0 chr6 136401773 136401904 -46013338 - AluSq/x SINE Alu -179 134 3 1890 145 21 0 chr6 136402005 136402295 -46012947 - AluSx SINE Alu -16 296 1 22 0 0 0 chr6 136402483 136402505 -46012737 + AT_rich Low_complexity Low_complexity 1 22 0 335 381 64 28 chr6 136402506 136402724 -46012518 + L2 LINE L2 2853 3078 -194 198 0 0 0 chr6 136403586 136403608 -46011634 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 29 47 0 0 chr6 136403608 136403651 -46011591 + AT_rich Low_complexity Low_complexity 1 43 0 2039 149 3 3 chr6 136403664 136403972 -46011270 + AluSq SINE Alu 3 310 -3 2445 81 0 0 chr6 136404075 136404383 -46010859 - AluY SINE Alu -3 308 1 485 140 280 0 chr6 136404640 136404740 -46010502 + MER41B LTR ERV1 1 128 -507 * 2867 135 30 82 chr6 136404738 136405362 -46009880 + LTR14B LTR ERVK 17 608 0 3004 148 4 4 chr6 136405362 136405876 -46009366 + MER41B LTR ERV1 122 635 0 2240 124 0 6 chr6 136406274 136406588 -46008654 - AluSx SINE Alu 0 312 1 2065 99 4 0 chr6 136406593 136406866 -46008376 - AluSp SINE Alu -39 274 1 25 0 0 0 chr6 136406897 136406922 -46008320 + AT_rich Low_complexity Low_complexity 1 25 0 2560 137 36 7 chr6 136407892 136408308 -46006934 - MSTA LTR MaLR 0 428 1 225 94 0 0 chr6 136408408 136408440 -46006802 + (T)n Simple_repeat Simple_repeat 1 32 0 2562 176 35 20 chr6 136408549 136409100 -46006142 - L1P LINE L1 -5587 559 1 2267 111 3 0 chr6 136409712 136410010 -46005232 - AluSx SINE Alu -13 299 1 2156 109 0 0 chr6 136411379 136411689 -46003553 + AluSp SINE Alu 1 310 0 181 57 57 0 chr6 136411699 136411734 -46003508 + A-rich Low_complexity Low_complexity 4 40 0 1359 113 5 5 chr6 136412382 136412577 -46002665 + AluSg SINE Alu 1 195 -115 425 31 62 0 chr6 136412579 136412644 -46002598 + AluY SINE Alu 65 133 -178 308 287 43 43 chr6 136412786 136412901 -46002341 - MER63A DNA MER1_type 0 210 96 186 43 0 0 chr6 136412956 136412979 -46002263 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 259 104 0 42 chr6 136412982 136413030 -46002212 - MER63A DNA MER1_type -157 53 8 22 0 0 0 chr6 136413395 136413417 -46001825 + AT_rich Low_complexity Low_complexity 1 22 0 2719 167 15 2 chr6 136414352 136414831 -46000411 + MER31A LTR ERV1 1 485 0 21 57 0 0 chr6 136415621 136415656 -45999586 + AT_rich Low_complexity Low_complexity 1 35 0 672 170 41 0 chr6 136415696 136415843 -45999399 - L1MA8 LINE L1 -36 6255 6103 934 123 14 7 chr6 136415847 136415993 -45999249 + AluY SINE Alu 1 147 -164 29 0 0 0 chr6 136416436 136416465 -45998777 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr6 136416538 136416579 -45998663 + AT_rich Low_complexity Low_complexity 1 41 0 2265 96 0 10 chr6 136416674 136416977 -45998265 + AluY SINE Alu 1 300 -11 1493 111 36 0 chr6 136416977 136417230 -45998012 - L1MA8 LINE L1 -182 6109 5848 368 313 90 30 chr6 136418219 136418452 -45996790 - MIR SINE MIR -6 256 10 325 278 0 10 chr6 136419937 136420034 -45995208 - MIR3 SINE MIR -6 202 107 441 374 122 17 chr6 136420621 136420915 -45994327 - L2 LINE L2 -17 3255 2931 237 65 0 0 chr6 136421715 136421746 -45993496 + (T)n Simple_repeat Simple_repeat 1 31 0 192 77 0 0 chr6 136421850 136421876 -45993366 + (A)n Simple_repeat Simple_repeat 1 26 0 2322 65 0 40 chr6 136422283 136422606 -45992636 - AluY SINE Alu -1 310 1 204 40 0 0 chr6 136422686 136422711 -45992531 + (TTG)n Simple_repeat Simple_repeat 3 27 0 22 0 0 0 chr6 136423173 136423195 -45992047 + AT_rich Low_complexity Low_complexity 1 22 0 2688 243 76 10 chr6 136423749 136424553 -45990689 - L1MD2 LINE L1 -10 6743 5887 319 234 11 53 chr6 136424559 136424653 -45990589 + MER2 DNA MER2_type 1 90 -255 1271 218 28 31 chr6 136424685 136424966 -45990276 - L1MD2 LINE L1 -743 5797 5602 2516 58 0 3 chr6 136424966 136425276 -45989966 - AluY SINE Alu -2 309 1 1271 218 28 31 chr6 136425276 136425543 -45989699 - L1MD2 LINE L1 -938 5602 5336 961 245 43 3 chr6 136425588 136425914 -45989328 - L1MD2 LINE L1 -4120 2420 2082 2122 117 3 3 chr6 136426069 136426368 -45988874 + AluSx SINE Alu 1 299 -13 2554 193 46 2 chr6 136426689 136427232 -45988010 - MER67C LTR ERV1 -8 702 136 995 224 38 44 chr6 136427247 136427586 -45987656 - MER2 DNA MER2_type 0 345 9 362 241 26 0 chr6 136427595 136427711 -45987531 - MER67C LTR ERV1 -591 119 1 2086 96 16 22 chr6 136427964 136428277 -45986965 - AluY SINE Alu 0 311 1 2072 106 14 7 chr6 136428277 136428570 -45986672 - AluSq SINE Alu -18 295 1 2689 200 93 13 chr6 136428570 136429441 -45985801 + L1 LINE L1 2776 3716 -2430 1707 172 27 22 chr6 136429446 136429469 -45985773 + L1 LINE L1 3958 3979 -2167 1953 130 120 48 chr6 136429469 136429823 -45985419 - MSTC LTR MaLR 0 428 39 2272 82 0 3 chr6 136429823 136430125 -45985117 + AluY SINE Alu 1 301 0 1953 130 120 48 chr6 136430125 136430168 -45985074 - MSTC LTR MaLR -389 39 1 1707 172 27 22 chr6 136430168 136430510 -45984732 + L1 LINE L1 3979 4325 -1821 198 0 0 0 chr6 136430512 136430534 -45984708 + (T)n Simple_repeat Simple_repeat 1 22 0 982 145 0 30 chr6 136430644 136430810 -45984432 - AluSq SINE Alu -76 237 77 2362 112 0 3 chr6 136430932 136431245 -45983997 + AluSx SINE Alu 1 312 0 34 0 0 0 chr6 136431770 136431804 -45983438 + AT_rich Low_complexity Low_complexity 1 34 0 2119 130 0 0 chr6 136432874 136433173 -45982069 - AluSx SINE Alu -13 299 1 253 270 54 0 chr6 136433182 136433256 -45981986 - L2 LINE L2 -19 3294 3217 1371 155 158 0 chr6 136435142 136435407 -45979835 - MER7A DNA MER2_type 0 346 42 1479 159 44 105 chr6 136435477 136435866 -45979376 + MLT1A1 LTR MaLR 1 365 0 2331 80 0 7 chr6 136436959 136437259 -45977983 - AluY SINE Alu -9 302 5 246 32 0 0 chr6 136438041 136438072 -45977170 + (CA)n Simple_repeat Simple_repeat 2 32 0 223 247 117 26 chr6 136438437 136438514 -45976728 + MIR3 SINE MIR 119 202 -6 201 74 0 0 chr6 136438726 136438753 -45976489 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 227 319 43 21 chr6 136438760 136438854 -45976388 - MER5B DNA MER1_type -56 122 27 21 36 0 0 chr6 136441278 136441306 -45973936 + AT_rich Low_complexity Low_complexity 1 28 0 201 105 18 53 chr6 136441526 136441583 -45973659 + (TTTTC)n Simple_repeat Simple_repeat 2 56 0 2081 133 0 7 chr6 136446005 136446313 -45968929 + AluSx SINE Alu 1 306 -6 224 308 168 14 chr6 136451558 136451701 -45963541 + MIR SINE MIR 51 215 -47 217 227 9 118 chr6 136453432 136453542 -45961700 + MIR SINE MIR 165 262 0 307 300 22 0 chr6 136453542 136453632 -45961610 + CT-rich Low_complexity Low_complexity 1 92 0 225 290 0 0 chr6 136457115 136457177 -45958065 + (TAA)n Simple_repeat Simple_repeat 3 64 0 194 296 56 19 chr6 136457407 136457461 -45957781 + MIR SINE MIR 39 94 -114 2068 130 0 0 chr6 136457673 136457974 -45957268 + AluSx SINE Alu 1 301 -11 45 19 0 0 chr6 136458419 136458471 -45956771 + AT_rich Low_complexity Low_complexity 1 52 0 718 249 30 0 chr6 136459102 136459267 -45955975 - MIR3 SINE MIR -7 201 32 2232 107 0 3 chr6 136459459 136459757 -45955485 - AluSg SINE Alu -13 297 1 1558 174 16 47 chr6 136460174 136460496 -45954746 - AluJo SINE Alu 0 312 1 204 182 23 23 chr6 136460690 136460734 -45954508 - L2 LINE L2 -3 3310 3267 339 313 21 35 chr6 136460944 136461088 -45954154 - MER5B DNA MER1_type -8 170 29 2316 106 0 0 chr6 136462584 136462885 -45952357 - AluSq SINE Alu -12 301 1 29 70 0 0 chr6 136464026 136464083 -45951159 + AT_rich Low_complexity Low_complexity 1 57 0 2440 67 0 0 chr6 136464502 136464800 -45950442 + AluY SINE Alu 1 298 -13 1771 133 69 72 chr6 136466703 136467079 -45948163 - THE1C LTR MaLR 0 375 1 213 363 82 52 chr6 136467533 136467668 -45947574 + L3 LINE CR1 1438 1576 -1 393 260 163 8 chr6 136467757 136467880 -45947362 - MER5B DNA MER1_type -36 142 1 292 267 56 0 chr6 136468086 136468176 -45947066 - MER20B DNA MER1_type -662 121 27 1824 112 54 4 chr6 136470922 136471199 -45944043 - AluSg SINE Alu -19 291 1 1517 157 11 8 chr6 136471215 136471477 -45943765 - AluJo SINE Alu -10 302 40 349 313 133 43 chr6 136473504 136473715 -45941527 - MIR SINE MIR -23 239 10 227 358 58 15 chr6 136473771 136473908 -45941334 + L3b LINE CR1 1382 1524 -59 233 257 209 9 chr6 136474414 136474519 -45940723 - MIR SINE MIR -73 189 64 241 308 68 60 chr6 136474931 136475048 -45940194 + L3b LINE CR1 1455 1572 -11 2317 110 0 0 chr6 136475374 136475683 -45939559 + AluSg SINE Alu 1 309 -1 1569 83 0 0 chr6 136475784 136475989 -45939253 - MER41A LTR ERV1 -195 359 155 33 0 0 0 chr6 136476376 136476409 -45938833 + AT_rich Low_complexity Low_complexity 1 33 0 792 236 94 5 chr6 136476832 136477023 -45938219 - MIR SINE MIR -46 216 9 306 176 44 44 chr6 136477140 136477208 -45938034 - MER116 DNA Mariner -4 76 9 199 390 110 7 chr6 136477235 136477381 -45937861 - L2 LINE L2 -8 3264 3104 192 270 135 71 chr6 136477408 136477534 -45937708 - MER5B DNA MER1_type 0 178 45 4066 71 32 0 chr6 136478369 136478906 -45936336 + MER41A LTR ERV1 1 554 0 494 245 148 42 chr6 136480127 136480343 -45934899 - Charlie8 DNA MER1_type -2135 282 44 202 336 103 19 chr6 136480597 136480704 -45934538 + L2 LINE L2 3155 3270 -2 333 296 62 56 chr6 136481564 136481743 -45933499 - MER5A DNA MER1_type -2 187 8 180 323 198 26 chr6 136481827 136482019 -45933223 - L2 LINE L2 -208 3064 2840 212 328 65 103 chr6 136482279 136482541 -45932701 - L2 LINE L2 -1 3271 3020 476 258 258 0 chr6 136483662 136483860 -45931382 - MIR SINE MIR -13 249 1 295 261 80 0 chr6 136484397 136484485 -45930757 + L2 LINE L2 2712 2806 -508 * 498 257 83 7 chr6 136484480 136484624 -45930618 + MER5B DNA MER1_type 13 167 -11 1051 294 57 48 chr6 136484686 136485162 -45930080 + L2 LINE L2 2828 3307 -6 372 220 0 0 chr6 136485412 136485471 -45929771 - MER2 DNA MER2_type -1 344 286 454 146 0 48 chr6 136485511 136485593 -45929649 - MER2 DNA MER2_type -135 210 132 14354 132 29 14 chr6 136485593 136487174 -45928068 + Tigger1 DNA MER2_type 1 1633 -785 2049 118 0 4 chr6 136487174 136487489 -45927753 + AluSc SINE Alu 1 314 0 14354 132 29 14 chr6 136487489 136488287 -45926955 + Tigger1 DNA MER2_type 1633 2417 -1 454 146 0 48 chr6 136488287 136488307 -45926935 - MER2 DNA MER2_type -213 132 113 1286 150 9 43 chr6 136488307 136488540 -45926702 + AluJo SINE Alu 82 306 -6 799 240 110 22 chr6 136488540 136488934 -45926308 + MLT1H LTR MaLR 95 549 0 2215 92 0 7 chr6 136489164 136489459 -45925783 - AluY SINE Alu -18 293 1 23 33 0 0 chr6 136490441 136490471 -45924771 + AT_rich Low_complexity Low_complexity 1 30 0 255 118 20 39 chr6 136490855 136490906 -45924336 + MADE1 DNA Mariner 31 80 0 2209 94 0 0 chr6 136491563 136491850 -45923392 + AluY SINE Alu 11 297 -14 389 243 59 37 chr6 136492419 136492555 -45922687 + Charlie8 DNA MER1_type 74 212 -2205 972 120 7 7 chr6 136492585 136492727 -45922515 + AluSq/x SINE Alu 1 142 -170 21 0 0 0 chr6 136493027 136493048 -45922194 + AT_rich Low_complexity Low_complexity 1 21 0 1314 196 11 11 chr6 136493151 136493421 -45921821 + L1MB8 LINE L1 5586 5855 -323 * 1405 241 7 34 chr6 136493412 136493848 -45921394 + L1MB8 LINE L1 5755 6178 0 3718 202 42 10 chr6 136494462 136495721 -45919521 + L1MB7 LINE L1 4870 6173 -11 756 289 69 53 chr6 136496299 136496808 -45918434 + LTR33 LTR ERVL 5 521 0 325 296 142 35 chr6 136496808 136497152 -45918090 + HAL1b LINE L1 339 719 -629 1217 97 6 0 chr6 136497159 136497335 -45917907 - L1PA13 LINE L1 -3 6160 5984 2275 96 0 7 chr6 136497457 136497749 -45917493 - AluSc SINE Alu -19 290 1 233 364 40 13 chr6 136499372 136499523 -45915719 - MIR SINE MIR -33 229 75 266 209 227 9 chr6 136499839 136499949 -45915293 + MIR SINE MIR 21 154 -108 193 299 44 124 chr6 136500570 136500707 -45914535 - L2 LINE L2 -15 3298 3173 313 359 0 0 chr6 136500786 136500878 -45914364 - L2 LINE L2 -35 3237 3146 3044 89 14 2 chr6 136501892 136502321 -45912921 + L1PA13 LINE L1 5730 6163 0 21 36 0 0 chr6 136502521 136502549 -45912693 + AT_rich Low_complexity Low_complexity 1 28 0 378 317 75 12 chr6 136502633 136502794 -45912448 - MIR3 SINE MIR -32 176 6 2284 75 10 0 chr6 136503222 136503516 -45911726 - AluY SINE Alu -14 297 1 2071 87 0 0 chr6 136504242 136504508 -45910734 + AluY SINE Alu 44 309 -2 516 161 0 124 chr6 136507441 136507578 -45907664 + MLT1C LTR MaLR 1 120 -270 501 107 27 0 chr6 136507578 136507653 -45907589 + BC200 scRNA scRNA 1 77 -123 1333 158 201 10 chr6 136507659 136507957 -45907285 + MLT1C LTR MaLR 113 467 0 371 333 108 39 chr6 136508816 136509149 -45906093 + L3 LINE CR1 1221 1576 -1 958 222 58 61 chr6 136509768 136510029 -45905213 - MIR SINE MIR -2 260 1 547 257 64 76 chr6 136510329 136510578 -45904664 + MIR SINE MIR 7 252 -10 306 297 155 50 chr6 136512216 136512455 -45902787 + L1M2 LINE L1 543 806 -6043 195 162 0 0 chr6 136512726 136512763 -45902479 + CT-rich Low_complexity Low_complexity 1 37 0 225 65 0 0 chr6 136513009 136513040 -45902202 + (CTG)n Simple_repeat Simple_repeat 3 33 0 22 0 0 0 chr6 136516416 136516438 -45898804 + AT_rich Low_complexity Low_complexity 1 22 0 257 323 46 15 chr6 136516847 136516977 -45898265 - L2 LINE L2 -2 3270 3137 231 239 80 34 chr6 136517972 136518060 -45897182 - MIR SINE MIR -81 181 90 190 317 78 30 chr6 136518745 136518912 -45896330 + L2 LINE L2 2863 3037 -235 226 227 0 0 chr6 136518919 136518963 -45896279 + MIR SINE MIR 86 129 -133 180 294 59 0 chr6 136519098 136519166 -45896076 - MIR SINE MIR 0 262 191 361 344 39 68 chr6 136520792 136521251 -45893991 - LTR33 LTR ERVL -8 513 68 2420 69 0 10 chr6 136521358 136521663 -45893579 - AluY SINE Alu -9 302 1 671 301 86 9 chr6 136521788 136522230 -45893012 - L1M4 LINE L1 -1572 4574 4099 2414 91 38 32 chr6 136522238 136522611 -45892631 - THE1C LTR MaLR 0 375 1 470 309 96 37 chr6 136522615 136523243 -45891999 + L1ME3A LINE L1 3956 4620 -1526 292 274 34 40 chr6 136523438 136523613 -45891629 + L1ME3A LINE L1 4887 5060 -1086 27 62 0 0 chr6 136523701 136523749 -45891493 + AT_rich Low_complexity Low_complexity 1 48 0 316 294 142 7 chr6 136523803 136524085 -45891157 + L1ME3A LINE L1 5258 5577 -585 387 265 83 0 chr6 136524226 136524358 -45890884 + L1ME3A LINE L1 5763 5905 -265 2424 77 0 0 chr6 136524401 136524712 -45890530 + AluY SINE Alu 1 311 0 613 285 113 76 chr6 136524843 136525303 -45889939 - MLT1K LTR MaLR -102 486 10 267 31 0 0 chr6 136525979 136526011 -45889231 + (TG)n Simple_repeat Simple_repeat 2 33 0 217 253 35 29 chr6 136526091 136526261 -45888981 + (TTATA)n Simple_repeat Simple_repeat 5 175 0 * 292 220 60 6 chr6 136526201 136526369 -45888873 + (TA)n Simple_repeat Simple_repeat 1 177 0 2464 121 29 74 chr6 136526864 136527231 -45888011 - MSTC LTR MaLR 0 428 83 2145 104 10 3 chr6 136527231 136527529 -45887713 + AluSq SINE Alu 1 300 -13 2464 121 29 74 chr6 136527529 136527609 -45887633 - MSTC LTR MaLR -345 83 1 250 292 147 30 chr6 136527882 136528321 -45886921 - L1MC/D LINE L1 -749 5419 5402 1252 92 0 33 chr6 136528321 136528505 -45886737 + L1PA8 LINE L1 5992 6169 -3 250 292 147 30 chr6 136528505 136528670 -45886572 - L1MC/D LINE L1 -766 5402 5258 708 256 12 18 chr6 136528849 136529017 -45886225 - MIR SINE MIR -89 173 7 533 324 136 20 chr6 136529040 136529598 -45885644 - L1MC/D LINE L1 -1301 4845 4223 22 0 0 0 chr6 136530253 136530275 -45884967 + AT_rich Low_complexity Low_complexity 1 22 0 897 291 91 51 chr6 136531685 136532574 -45882668 + L2 LINE L2 2386 3313 0 350 208 28 0 chr6 136533408 136533552 -45881690 + GA-rich Low_complexity Low_complexity 2 149 0 1967 142 0 49 chr6 136533723 136534048 -45881194 - AluSx SINE Alu -3 309 1 2272 108 16 0 chr6 136534788 136535066 -45880176 + AluSx SINE Alu 1 368 0 468 129 24 0 chr6 136535066 136535151 -45880091 + GA-rich Low_complexity Low_complexity 2 180 0 405 162 0 0 chr6 136535527 136535595 -45879647 - MIR SINE MIR -120 142 75 1026 149 0 0 chr6 136539953 136540173 -45875069 + (TA)n Simple_repeat Simple_repeat 1 220 0 1812 105 0 0 chr6 136540186 136540424 -45874818 + AluSx SINE Alu 1 238 -74 982 177 0 17 chr6 136540878 136541053 -45874189 - FRAM SINE Alu -2 174 3 2195 100 10 7 chr6 136541225 136541525 -45873717 - AluSc SINE Alu -8 301 1 195 162 0 0 chr6 136541606 136541643 -45873599 + CT-rich Low_complexity Low_complexity 2 38 0 28 0 0 0 chr6 136543781 136543809 -45871433 + AT_rich Low_complexity Low_complexity 1 28 0 525 222 0 0 chr6 136543838 136543946 -45871296 - FLAM_A SINE Alu -34 108 1 350 370 14 20 chr6 136544013 136544159 -45871083 + MIR3 SINE MIR 47 191 -17 596 259 41 30 chr6 136545330 136545600 -45869642 - L1M4 LINE L1 -2890 3256 2984 661 213 12 0 chr6 136545614 136545774 -45869468 - L1M4 LINE L1 -3207 2939 2778 1345 214 52 7 chr6 136545892 136546181 -45869061 + AluJo SINE Alu 11 312 0 1548 266 20 33 chr6 136546183 136546789 -45868453 + L1M4 LINE L1 3167 3764 -2382 2792 164 172 85 chr6 136546830 136547643 -45867599 + L1MC3 LINE L1 6414 7297 -488 1492 135 4 0 chr6 136547630 136547874 -45867368 + L1 LINE L1 3463 3707 -2439 * 1100 200 5 23 chr6 136548165 136548380 -45866862 - MER20 DNA MER1_type -4 215 5 22 56 0 0 chr6 136549548 136549584 -45865658 + AT_rich Low_complexity Low_complexity 1 36 0 322 299 13 0 chr6 136550119 136550196 -45865046 - L2 LINE L2 -5 3267 3190 458 279 32 58 chr6 136551799 136551989 -45863253 + MIR SINE MIR 53 237 -25 207 114 0 0 chr6 136552149 136552184 -45863058 + (TG)n Simple_repeat Simple_repeat 2 36 0 1290 280 21 16 chr6 136552517 136552903 -45862339 + L1MA7 LINE L1 1 388 -5893 2863 273 32 34 chr6 136553160 136554284 -45860958 + L1MA7 LINE L1 818 1891 -4460 4113 133 1 49 chr6 136554297 136554996 -45860246 + THE1C-int LTR MaLR 688 1353 -227 1770 128 7 4 chr6 136555108 136555389 -45859853 + THE1C-int LTR MaLR 1295 1576 -4 2532 109 8 11 chr6 136555393 136555769 -45859473 + THE1C LTR MaLR 1 375 0 1520 212 23 5 chr6 136555775 136556162 -45859080 + L1MA7 LINE L1 2330 2723 -3627 5231 201 41 18 chr6 136556187 136556963 -45858279 + L1MA7 LINE L1 4019 4776 -1719 1969 119 21 7 chr6 136556963 136557249 -45857993 + AluSg SINE Alu 1 290 -20 5231 201 41 18 chr6 136557249 136558871 -45856371 + L1MA7 LINE L1 4776 6490 -5 2136 132 48 25 chr6 136558936 136559292 -45855950 + THE1B LTR MaLR 1 364 0 3112 93 2 0 chr6 136559292 136559720 -45855522 + THE1B-int LTR MaLR 1 429 -1151 3522 51 0 2 chr6 136559749 136560197 -45855045 - L1PA6 LINE L1 0 6154 5708 472 206 29 37 chr6 136560228 136560364 -45854878 - L1MA9 LINE L1 -137 6175 6041 * 2095 143 5 90 chr6 136560340 136560761 -45854481 + L1MA9 LINE L1 5683 6067 -245 524 241 108 6 chr6 136561056 136561214 -45854028 + MER46C DNA MER2_type 123 296 -42 893 296 110 33 chr6 136561226 136561696 -45853546 - MLT1H LTR MaLR 0 549 1 1360 151 42 26 chr6 136562818 136562929 -45852313 + AluJb SINE Alu 12 120 -192 198 0 0 0 chr6 136562929 136562951 -45852291 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 1360 151 42 26 chr6 136562951 136563104 -45852138 + AluJb SINE Alu 120 280 -32 929 251 135 19 chr6 136563339 136563889 -45851353 + L1MCc LINE L1 1103 1702 -4887 1128 204 117 38 chr6 136563922 136564282 -45850960 + MER57A LTR ERV1 39 403 0 1220 242 27 83 chr6 136564309 136564499 -45850743 + L1MCc LINE L1 1996 2195 -4927 2268 84 0 34 chr6 136564499 136564821 -45850421 + AluY SINE Alu 1 311 0 1220 242 27 83 chr6 136564821 136565184 -45850058 + L1MCc LINE L1 2195 2518 -4604 28 61 0 0 chr6 136565756 136565805 -45849437 + AT_rich Low_complexity Low_complexity 1 49 0 2241 68 0 3 chr6 136565899 136566194 -45849048 - AluY SINE Alu -17 294 1 246 229 18 92 chr6 136566260 136566369 -45848873 + L2 LINE L2 963 1063 -2251 440 239 0 123 chr6 136566394 136566637 -45848605 - L2 LINE L2 -1448 1866 1654 29 0 0 0 chr6 136566662 136566691 -45848551 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 136566769 136566797 -45848445 + AT_rich Low_complexity Low_complexity 1 28 0 207 186 0 0 chr6 136566816 136566859 -45848383 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1567 286 87 22 chr6 136566862 136567694 -45847548 - HAL1 LINE L1 -166 2341 1456 372 298 84 40 chr6 136567721 136568174 -45847068 - HAL1b LINE L1 -840 508 36 24 0 0 0 chr6 136568412 136568436 -45846806 + AT_rich Low_complexity Low_complexity 1 24 0 1503 88 0 14 chr6 136568436 136568653 -45846589 - L1PA7 LINE L1 -3 6151 5938 370 361 30 18 chr6 136570363 136570529 -45844713 + MIR SINE MIR 1 168 -94 608 322 147 22 chr6 136570734 136571184 -45844058 - MLT1J LTR MaLR -2 509 4 1120 309 50 11 chr6 136572619 136573062 -45842180 - MLT1J LTR MaLR -46 465 6 276 269 115 0 chr6 136574166 136574244 -45840998 - L2 LINE L2 -7 3306 3220 567 182 74 16 chr6 136574642 136574763 -45840479 - MIR SINE MIR -80 182 55 214 120 0 80 chr6 136574910 136574960 -45840282 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 848 189 99 121 chr6 136578020 136578432 -45836810 - MER57A LTR ERV1 0 403 1 1741 327 38 34 chr6 136578432 136579318 -45835924 - MER31-int LTR ERV1 -393 7144 6255 1270 257 31 83 chr6 136579807 136580390 -45834852 - MER31-int LTR ERV1 -1330 6207 2453 2391 206 24 71 chr6 136580546 136580934 -45834308 - MER31-int LTR ERV1 -1716 5821 5475 1885 101 4 33 chr6 136580934 136581210 -45834032 + AluSg SINE Alu 30 297 -13 2391 206 24 71 chr6 136581210 136581485 -45833757 - MER31-int LTR ERV1 -2062 5475 5189 2336 214 69 80 chr6 136581479 136582535 -45832707 - MER31-int LTR ERV1 -1897 3039 1995 * 1913 160 71 4 chr6 136582671 136583037 -45832205 - MER61C LTR ERV1 -47 387 13 1042 285 133 37 chr6 136583050 136583597 -45831645 - HAL1 LINE L1 -1801 706 107 403 333 14 0 chr6 136584126 136584267 -45830975 + MIR SINE MIR 119 261 -1 306 319 0 11 chr6 136584283 136584374 -45830868 + MIR SINE MIR 13 102 -160 468 281 81 93 chr6 136584441 136584826 -45830416 - MLT1H LTR MaLR -158 391 12 27 0 0 0 chr6 136588607 136588634 -45826608 + AT_rich Low_complexity Low_complexity 1 27 0 2092 117 7 0 chr6 136588819 136589126 -45826116 + AluSx SINE Alu 1 309 0 278 333 38 15 chr6 136589128 136589260 -45825982 + MIR SINE MIR 57 191 -71 1781 157 124 11 chr6 136589295 136589651 -45825591 - MER61B LTR ERV1 -29 396 1 272 122 0 0 chr6 136589659 136589700 -45825542 - MER61B-int LTR ERV1 -22 5195 5155 42064 35 23 1 chr6 136589703 136595701 -45819541 + L1PA2 LINE L1 13 6147 -8 252 0 0 0 chr6 136595701 136595729 -45819513 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 12880 117 32 13 chr6 136595736 136598484 -45816758 - MER61B-int LTR ERV1 -48 5169 2304 704 42 0 21 chr6 136598490 136598585 -45816657 - MER61B LTR ERV1 -332 93 1 368 315 52 44 chr6 136599338 136599589 -45815653 + L1 LINE L1 5028 5280 -866 324 258 0 0 chr6 136599607 136599673 -45815569 + AluJ/FLAM SINE Alu 1 66 -236 7783 224 35 17 chr6 136599673 136600532 -45814710 - L1 LINE L1 -2147 5418 4575 2309 75 14 0 chr6 136600532 136600827 -45814415 - AluY SINE Alu -12 299 1 7783 224 35 17 chr6 136600827 136602479 -45812763 - L1 LINE L1 -2990 4575 2853 333 0 0 0 chr6 136602479 136602516 -45812726 + (TG)n Simple_repeat Simple_repeat 2 38 0 7783 224 35 17 chr6 136602516 136602530 -45812712 - L1 LINE L1 -4712 2853 2841 766 318 33 47 chr6 136602723 136603208 -45812034 - L1 LINE L1 -4738 1827 1350 466 134 50 76 chr6 136603183 136603302 -45811940 - L1 LINE L1 -6908 581 466 * 775 236 34 0 chr6 136603588 136603766 -45811476 + MER58A DNA MER1_type 1 184 -40 1224 265 68 39 chr6 136604481 136604919 -45810323 + MER74B LTR ERVL 102 552 -70 211 366 73 8 chr6 136605355 136605478 -45809764 - L2 LINE L2 -8 3305 3175 636 184 246 17 chr6 136605748 136605927 -45809315 - MER58A DNA MER1_type 0 224 5 458 320 78 0 chr6 136607577 136607730 -45807512 - L2 LINE L2 -701 2613 2449 1295 272 98 34 chr6 136608124 136608705 -45806537 + L1MC4 LINE L1 6468 7085 -957 220 163 58 0 chr6 136608750 136608836 -45806406 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 506 353 118 17 chr6 136609031 136609571 -45805671 + L2 LINE L2 2709 3313 0 224 217 14 29 chr6 136609963 136610032 -45805210 + CT-rich Low_complexity Low_complexity 3 70 0 1479 224 30 16 chr6 136610067 136610370 -45804872 + Tigger5 DNA MER2_type 1 307 -2016 1325 110 60 0 chr6 136610375 136610575 -45804667 + Tigger5 DNA MER2_type 2112 2323 0 26 0 0 0 chr6 136610589 136610615 -45804627 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 136610682 136610712 -45804530 + AT_rich Low_complexity Low_complexity 1 30 0 427 224 118 20 chr6 136610750 136610902 -45804340 - LTR16A LTR ERVL -32 418 252 2082 273 48 50 chr6 136611302 136612870 -45802372 + L1MCc LINE L1 832 2619 -4503 309 225 78 21 chr6 136613070 136613212 -45802030 + L1MCc LINE L1 2946 3095 -4027 5744 28 0 3 chr6 136613344 136614036 -45801206 - L1HS LINE L1 -913 5233 4544 * 7795 15 0 0 chr6 136614024 136614952 -45800290 + L1HS LINE L1 5222 6149 -6 22 56 0 0 chr6 136614952 136614988 -45800254 + AT_rich Low_complexity Low_complexity 1 36 0 2361 135 25 39 chr6 136615820 136616258 -45798984 - Tigger2a DNA MER2_type -2 432 1 1769 240 73 17 chr6 136616398 136616865 -45798377 + MLT1D LTR MaLR 13 505 0 2233 164 32 8 chr6 136617604 136617983 -45797259 + MER61D LTR ERV1 114 501 0 180 111 0 0 chr6 136620319 136620346 -45794896 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2863 264 138 22 chr6 136621898 136623545 -45791697 - L1M4 LINE L1 -678 5998 4156 3444 264 109 26 chr6 136623565 136624851 -45790391 - L1M4 LINE L1 -4036 2610 1432 541 230 15 52 chr6 136624851 136624986 -45790256 - FLAM_A SINE Alu 0 133 4 3444 264 109 26 chr6 136624986 136625083 -45790159 - L1M4 LINE L1 -5214 1432 1344 225 0 0 0 chr6 136625083 136625108 -45790134 + (TG)n Simple_repeat Simple_repeat 1 25 0 3444 264 109 26 chr6 136625108 136626097 -45789145 - L1M4 LINE L1 -5302 1344 16 224 336 126 0 chr6 136626128 136626247 -45788995 - MIR SINE MIR -123 139 6 309 289 132 18 chr6 136626276 136626390 -45788852 - MIR SINE MIR -16 246 120 28 79 0 0 chr6 136626453 136626516 -45788726 + AT_rich Low_complexity Low_complexity 1 63 0 564 276 110 32 chr6 136626877 136627123 -45788119 + HAL1 LINE L1 126 390 -2117 831 348 47 18 chr6 136627144 136627653 -45787589 + HAL1 LINE L1 448 971 -1536 1129 60 0 0 chr6 136627656 136627790 -45787452 + AluSg1 SINE Alu 1 134 -175 470 18 0 0 chr6 136627790 136627847 -45787395 + AluY SINE Alu 240 296 -14 306 280 44 51 chr6 136627850 136628146 -45787096 + HAL1 LINE L1 972 1265 -1242 1743 140 13 16 chr6 136630714 136631021 -45784221 + L1PA13 LINE L1 5855 6160 -3 2017 72 0 0 chr6 136631987 136632252 -45782990 - L1PA7 LINE L1 0 6154 5890 485 291 99 28 chr6 136632313 136632526 -45782716 + MIR SINE MIR 35 262 0 198 313 76 21 chr6 136633233 136633377 -45781865 + L2 LINE L2 2217 2368 -946 21 0 0 0 chr6 136633675 136633696 -45781546 + AT_rich Low_complexity Low_complexity 1 21 0 578 211 66 27 chr6 136633848 136634072 -45781170 + L1ME2 LINE L1 5799 6026 -140 286 253 117 7 chr6 136634192 136634346 -45780896 + L1MA10 LINE L1 6164 6334 0 637 245 85 123 chr6 136636045 136636420 -45778822 - L1MC4a LINE L1 -1642 6166 5821 207 0 0 0 chr6 136636420 136636443 -45778799 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 637 245 85 123 chr6 136636443 136636666 -45778576 - L1MC4a LINE L1 -1987 5821 5591 737 299 40 30 chr6 136636670 136636974 -45778268 + L1MDa LINE L1 34 340 -6200 1566 261 36 39 chr6 136637148 136637615 -45777627 + L1MDa LINE L1 772 1237 -5306 786 238 10 0 chr6 136637608 136637801 -45777441 + L1MDa LINE L1 3030 3224 -3316 * 328 308 83 0 chr6 136637804 136637937 -45777305 + L1M4 LINE L1 4293 4436 -1710 6277 200 36 30 chr6 136637938 136638755 -45776487 + L1MA4 LINE L1 1216 2026 -5539 180 0 0 0 chr6 136638755 136638775 -45776467 + (TA)n Simple_repeat Simple_repeat 2 21 0 6277 200 36 30 chr6 136638775 136639185 -45776057 + L1MA4 LINE L1 2026 2432 -5133 3567 83 42 42 chr6 136639185 136639763 -45775479 - LTR19B LTR ERV1 -2 578 1 6277 200 36 30 chr6 136639763 136640791 -45774451 + L1MA4 LINE L1 2432 3519 -4046 14476 201 26 3 chr6 136640911 136644628 -45770614 + L1MA4 LINE L1 3403 7210 -509 1347 193 131 52 chr6 136644628 136644923 -45770319 - MSTA LTR MaLR 0 428 93 2570 98 8 19 chr6 136644923 136645302 -45769940 + THE1C LTR MaLR 1 375 0 1347 193 131 52 chr6 136645302 136645394 -45769848 - MSTA LTR MaLR -335 93 10 2376 188 10 4 chr6 136645398 136645904 -45769338 + L1MA4 LINE L1 7201 7709 -10 3061 243 83 18 chr6 136645939 136647672 -45767570 + L1MD1 LINE L1 4399 6241 -1 361 250 273 0 chr6 136647666 136647838 -45767404 - L1MC/D LINE L1 -2190 5618 5400 * 6217 89 8 18 chr6 136648417 136649384 -45765858 + L1PA12 LINE L1 4678 5632 -536 2474 109 9 0 chr6 136649384 136649733 -45765509 + THE1A LTR MaLR 2 353 -2 6217 89 8 18 chr6 136649733 136650255 -45764987 + L1PA12 LINE L1 5632 6158 -10 1254 239 31 14 chr6 136650294 136650587 -45764655 + MER77 LTR ERV1 77 374 -231 276 247 24 12 chr6 136650592 136650677 -45764565 - L1MC/D LINE L1 -2406 5402 5317 31 0 0 0 chr6 136653204 136653235 -45762007 + AT_rich Low_complexity Low_complexity 1 31 0 2350 81 0 0 chr6 136653426 136653721 -45761521 - AluSg SINE Alu -15 295 1 22 0 0 0 chr6 136653727 136653749 -45761493 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr6 136654666 136654692 -45760550 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2411 80 0 0 chr6 136654786 136655098 -45760144 - AluSx SINE Alu 0 312 1 2282 98 3 0 chr6 136655885 136656192 -45759050 - AluSg SINE Alu -2 308 1 297 0 0 0 chr6 136656831 136656864 -45758378 + (A)n Simple_repeat Simple_repeat 1 33 0 287 103 0 0 chr6 136656977 136657016 -45758226 + L1P3 LINE L1 5818 5856 -298 3727 86 25 2 chr6 136657214 136657736 -45757506 + L1PA6 LINE L1 5619 6152 -2 355 339 67 9 chr6 136657880 136658104 -45757138 + MLT1J LTR MaLR 258 494 -17 364 309 62 35 chr6 136658713 136659085 -45756157 + L1M4 LINE L1 4465 4846 -1300 923 313 81 25 chr6 136659326 136659808 -45755434 + MLT1J LTR MaLR 1 509 -2 261 0 0 0 chr6 136659861 136659890 -45755352 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 294 29 0 0 chr6 136659889 136659924 -45755318 + (GA)n Simple_repeat Simple_repeat 2 36 0 309 362 130 6 chr6 136660007 136660184 -45755058 - MIR SINE MIR -19 243 45 38177 40 4 1 chr6 136664064 136669579 -45745663 - L1PA4 LINE L1 -4 6151 623 685 104 0 0 chr6 136669579 136669675 -45745567 - L1PA4 LINE L1 -6050 96 1 22 35 0 0 chr6 136669726 136669755 -45745487 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 136669955 136669979 -45745263 + AT_rich Low_complexity Low_complexity 1 24 0 200 151 0 113 chr6 136670946 136670999 -45744243 - MIR SINE MIR 0 262 216 1932 185 115 7 chr6 136671042 136671458 -45743784 - LOR1b LTR ERV1 0 461 1 746 273 122 65 chr6 136671662 136672259 -45742983 + MER20B DNA MER1_type 84 714 -69 11643 195 53 19 chr6 136672283 136676034 -45739208 - L1PA15 LINE L1 -22 6794 2920 1079 176 11 0 chr6 136676050 136676237 -45739005 - L1PA15 LINE L1 -6598 189 1 1196 98 0 0 chr6 136676289 136676452 -45738790 + L1PA7 LINE L1 5988 6150 -4 26 0 0 0 chr6 136677058 136677084 -45738158 + AT_rich Low_complexity Low_complexity 1 26 0 1057 256 4 4 chr6 136677891 136678129 -45737113 - MER8 DNA MER2_type 0 239 2 415 338 69 8 chr6 136678139 136678500 -45736742 + MER20B DNA MER1_type 317 699 -84 3725 262 39 23 chr6 136679301 136680911 -45734331 + L1M3b LINE L1 2266 3675 -3890 994 199 0 20 chr6 136680920 136681116 -45734126 - MLT1C LTR MaLR -275 192 1 699 199 62 0 chr6 136681119 136681265 -45733977 - L1ME LINE L1 -606 5820 5666 1339 277 36 15 chr6 136681356 136681832 -45733410 - L1ME LINE L1 -2069 4337 3852 793 268 112 54 chr6 136681842 136682360 -45732882 - L1ME LINE L1 -5074 1335 788 830 220 94 0 chr6 136682562 136682785 -45732457 - LTR54B LTR ERV1 -79 419 176 2498 217 69 102 chr6 136682894 136683399 -45731843 - MER31-int LTR ERV1 -469 6129 5609 2001 138 0 0 chr6 136683399 136683716 -45731526 + AluSx SINE Alu 1 317 0 2498 217 69 102 chr6 136683716 136683963 -45731279 - MER31-int LTR ERV1 -989 5609 5355 5944 101 18 4 chr6 136683963 136685756 -45729486 - L1PA14 LINE L1 0 6161 4340 2498 217 69 102 chr6 136685756 136686694 -45728548 - MER31-int LTR ERV1 -1243 5355 3109 302 340 127 28 chr6 136687698 136687910 -45727332 - MIR SINE MIR -11 251 19 812 302 34 77 chr6 136688031 136688567 -45726675 + MER34 LTR ERV1 1 513 -29 199 349 71 24 chr6 136688655 136688781 -45726461 - L2 LINE L2 0 3272 3141 267 93 0 0 chr6 136689610 136689653 -45725589 + (CA)n Simple_repeat Simple_repeat 1 43 0 476 327 87 3 chr6 136689736 136690045 -45725197 - L1MC/D LINE L1 -2053 5755 5421 21 0 0 0 chr6 136690071 136690092 -45725150 + AT_rich Low_complexity Low_complexity 1 21 0 37 23 0 0 chr6 136690189 136690233 -45725009 + AT_rich Low_complexity Low_complexity 1 44 0 3077 186 63 31 chr6 136690328 136691028 -45724214 - Tigger6a DNA MER2_type -361 722 1 2168 144 29 16 chr6 136691083 136691466 -45723776 - MLT1B LTR MaLR -1 389 2 1872 239 30 11 chr6 136691475 136691954 -45723288 - MLT1B-int LTR MaLR -6 1729 1143 2821 214 52 31 chr6 136692148 136692738 -45722504 - MLT1B-int LTR MaLR -487 884 171 2105 135 3 0 chr6 136692738 136693034 -45722208 - AluSx SINE Alu -15 297 1 2821 214 52 31 chr6 136693034 136693205 -45722037 - MLT1B-int LTR MaLR -1200 171 5 1348 176 61 108 chr6 136693209 136693618 -45721624 - MLT1B LTR MaLR 0 390 1 1522 312 115 15 chr6 136693654 136694513 -45720729 + L2 LINE L2 2214 3173 -140 1033 238 39 86 chr6 136696227 136696715 -45718527 + L1M4 LINE L1 4808 5272 -874 22 35 0 0 chr6 136697459 136697488 -45717754 + AT_rich Low_complexity Low_complexity 1 29 0 2252 258 27 59 chr6 136697654 136698629 -45716613 - L1ME3 LINE L1 -27 6118 5172 321 309 67 36 chr6 136698631 136698825 -45716417 - L1ME3 LINE L1 -4481 1648 1449 379 298 33 60 chr6 136698951 136699250 -45715992 - L1ME3 LINE L1 -4862 1257 967 1912 117 133 15 chr6 136699276 136699600 -45715642 - THE1B LTR MaLR 0 364 3 2838 13 0 0 chr6 136699663 136699974 -45715268 - AluYa5 SINE Alu 0 311 1 1663 242 11 6 chr6 136700438 136700793 -45714449 - MLT1A1 LTR MaLR -8 357 1 2250 340 46 42 chr6 136700804 136702418 -45712824 + HERVL LTR ERVL 2937 4556 -1098 683 238 49 49 chr6 136702483 136702706 -45712536 + LTR16A1 LTR ERVL 235 457 0 26 50 0 0 chr6 136702813 136702853 -45712389 + AT_rich Low_complexity Low_complexity 1 40 0 744 297 20 20 chr6 136702853 136703099 -45712143 - MIR SINE MIR 0 262 17 1275 309 49 24 chr6 136703108 136703523 -45711719 - L2 LINE L2 -5 3308 2905 2842 83 8 3 chr6 136703523 136703896 -45711346 - THE1C LTR MaLR 0 375 1 1275 309 49 24 chr6 136703896 136704264 -45710978 - L2 LINE L2 -408 2905 2493 342 292 178 25 chr6 136706870 136707072 -45708170 - MIR SINE MIR -1 261 29 537 135 0 0 chr6 136707553 136707642 -45707600 + (TCCC)n Simple_repeat Simple_repeat 2 90 0 288 244 26 13 chr6 136707649 136707727 -45707515 + CT-rich Low_complexity Low_complexity 2 80 0 345 296 17 85 chr6 136707727 136707903 -45707339 + MIR SINE MIR 53 216 -46 244 351 0 0 chr6 136708297 136708371 -45706871 + MIR SINE MIR 19 92 -170 235 340 92 20 chr6 136708482 136708635 -45706607 + MIR SINE MIR 34 197 -65 188 219 29 162 chr6 136708873 136708978 -45706264 - L3 LINE CR1 -4 1573 1483 839 283 85 43 chr6 136710027 136710745 -45704497 - L2 LINE L2 -1 3312 2470 802 243 125 36 chr6 136710853 136711157 -45704085 - MER58B DNA MER1_type -10 331 1 188 250 44 44 chr6 136711219 136711287 -45703955 - MIR SINE MIR -83 179 112 461 315 42 6 chr6 136712455 136712620 -45702622 - MIR3 SINE MIR -4 204 34 1075 295 14 10 chr6 136713025 136713313 -45701929 + LTR16A LTR ERVL 120 408 -42 322 305 91 52 chr6 136713778 136713988 -45701254 - MIR SINE MIR -24 238 21 384 329 79 16 chr6 136715734 136715986 -45699256 - L3b LINE CR1 -138 1445 1178 23 78 0 0 chr6 136716726 136716777 -45698465 + AT_rich Low_complexity Low_complexity 1 51 0 302 261 232 48 chr6 136717519 136717791 -45697451 + MLT1H LTR MaLR 1 322 -227 576 348 90 66 chr6 136719081 136719858 -45695384 + L2 LINE L2 224 1019 -2295 435 314 194 8 chr6 136719912 136720164 -45695078 + L2 LINE L2 1936 2234 -1080 326 336 42 28 chr6 136720483 136720626 -45694616 + L2 LINE L2 3165 3309 -4 306 67 0 0 chr6 136722058 136722103 -45693139 + (TG)n Simple_repeat Simple_repeat 2 46 0 338 250 48 143 chr6 136725219 136725555 -45689687 - L2 LINE L2 -2 3311 3008 431 0 0 78 chr6 136725768 136725832 -45689410 + (TC)n Simple_repeat Simple_repeat 2 60 0 638 247 67 5 chr6 136726401 136726595 -45688647 - Charlie7 DNA MER1_type -355 2257 2052 1674 185 10 13 chr6 136726616 136727043 -45688199 + AluJo SINE Alu 1 426 0 531 212 24 6 chr6 136727010 136727175 -45688067 + GA-rich Low_complexity Low_complexity 2 169 0 2095 259 106 75 chr6 136727198 136728323 -45686919 - Charlie7 DNA MER1_type -598 2014 832 2199 97 0 32 chr6 136728323 136728634 -45686608 - AluSg SINE Alu -9 301 1 2095 259 106 75 chr6 136728634 136728957 -45686285 - Charlie7 DNA MER1_type -1780 832 521 1617 247 117 60 chr6 136729019 136729953 -45685289 - L1ME3A LINE L1 -9 6161 5178 447 264 96 0 chr6 136729959 136730126 -45685116 - Charlie7 DNA MER1_type -2178 434 252 457 215 83 0 chr6 136730276 136730397 -45684845 + L1MC5 LINE L1 7252 7382 -579 1130 214 132 38 chr6 136730659 136731136 -45684106 + L1MC5 LINE L1 7391 7912 -49 2313 91 3 7 chr6 136731217 136731526 -45683716 + AluSc SINE Alu 1 308 -1 231 36 0 0 chr6 136731542 136731570 -45683672 + (TG)n Simple_repeat Simple_repeat 1 28 0 237 154 0 0 chr6 136731570 136731622 -45683620 + L1MC4 LINE L1 6649 6700 -1342 285 75 0 0 chr6 136731939 136731979 -45683263 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr6 136732861 136732887 -45682355 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr6 136733480 136733503 -45681739 + (A)n Simple_repeat Simple_repeat 1 23 0 429 237 99 69 chr6 136735532 136735836 -45679406 - MLT1C LTR MaLR 0 467 59 2079 109 23 0 chr6 136735994 136736298 -45678944 + AluY SINE Alu 1 311 0 30 0 0 0 chr6 136737917 136737947 -45677295 + AT_rich Low_complexity Low_complexity 1 30 0 312 179 0 0 chr6 136738600 136738656 -45676586 + L1MB3 LINE L1 5561 5616 -675 2099 125 3 13 chr6 136738656 136738968 -45676274 + AluSx SINE Alu 1 309 -3 3130 149 5 20 chr6 136738999 136739590 -45675652 + L1MB3 LINE L1 5601 6182 -1 3155 182 25 17 chr6 136740989 136741460 -45673782 + L1MA10 LINE L1 5677 6156 -178 240 35 0 0 chr6 136741460 136741489 -45673753 + (CA)n Simple_repeat Simple_repeat 2 30 0 3155 182 25 17 chr6 136741489 136741670 -45673572 + L1MA10 LINE L1 6156 6334 0 235 278 9 46 chr6 136741793 136741901 -45673341 + L1P4 LINE L1 5550 5653 -513 306 193 45 45 chr6 136742798 136742886 -45672356 - MLT1J LTR MaLR -31 480 393 460 205 90 16 chr6 136742888 136743010 -45672232 - MLT1J LTR MaLR -380 131 1 285 289 0 26 chr6 136743017 136743093 -45672149 + L2 LINE L2 3232 3305 -8 24 100 0 0 chr6 136743282 136743362 -45671880 + AT_rich Low_complexity Low_complexity 1 80 0 383 57 74 46 chr6 136743362 136743537 -45671705 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 * 430 171 28 0 chr6 136743528 136743818 -45671424 + (TA)n Simple_repeat Simple_repeat 1 298 0 228 144 61 8 chr6 136743935 136744067 -45671175 + (TA)n Simple_repeat Simple_repeat 2 140 0 1364 220 68 54 chr6 136744822 136745250 -45669992 - MSTB2 LTR MaLR -9 448 15 249 295 38 76 chr6 136745322 136745427 -45669815 + MIR SINE MIR 29 129 -79 338 333 65 43 chr6 136745509 136745695 -45669547 + MIR3 SINE MIR 16 205 -3 6842 207 51 33 chr6 136747342 136749888 -45665354 + L1M1 LINE L1 2710 5501 -2064 1450 181 172 10 chr6 136749889 136750297 -45664945 + L1M1 LINE L1 5657 6130 -1435 1357 196 19 69 chr6 136750350 136750727 -45664515 + L1MA10 LINE L1 5963 6320 -14 317 365 0 0 chr6 136751029 136751144 -45664098 - MLT1L LTR MaLR -133 482 368 1919 141 20 0 chr6 136752389 136752688 -45662554 + AluSx SINE Alu 8 312 0 673 208 124 6 chr6 136753660 136753838 -45661404 + MER3 DNA MER1_type 5 203 -6 257 266 0 106 chr6 136754086 136754113 -45661129 - MLT1I LTR MaLR -253 156 128 2448 50 0 3 chr6 136754113 136754414 -45660828 - AluY SINE Alu -11 300 1 257 266 0 106 chr6 136754414 136754480 -45660762 - MLT1I LTR MaLR -281 128 73 244 262 14 0 chr6 136754571 136754712 -45660530 + (TA)n Simple_repeat Simple_repeat 2 144 0 185 62 83 0 chr6 136755044 136755092 -45660150 + (TA)n Simple_repeat Simple_repeat 2 53 0 199 280 20 0 chr6 136755108 136755158 -45660084 + L2 LINE L2 3258 3308 -5 988 275 47 59 chr6 136755948 136756355 -45658887 + L2 LINE L2 2215 2616 -698 689 154 0 8 chr6 136756382 136756512 -45658730 + CT-rich Low_complexity Low_complexity 4 132 0 321 345 0 18 chr6 136756515 136756625 -45658617 + L2 LINE L2 2636 2743 -571 2090 231 12 14 chr6 136756630 136757137 -45658105 - L1 LINE L1 -1112 5034 4529 1318 214 34 10 chr6 136757142 136757437 -45657805 + AluJo SINE Alu 7 308 -4 1309 175 192 2 chr6 136757444 136757931 -45657311 + L1P4 LINE L1 5004 5591 -574 310 276 47 0 chr6 136758106 136758233 -45657009 + LTR43 LTR ERV1 180 312 -290 2798 175 39 12 chr6 136758445 136759039 -45656203 + L1MB1 LINE L1 5553 6162 -6 287 329 213 9 chr6 136759065 136759292 -45655950 + L2 LINE L2 2738 3010 -303 641 195 99 78 chr6 136760310 136760592 -45654650 + MER33 DNA MER1_type 32 319 -5 343 216 148 0 chr6 136760770 136760858 -45654384 - MIR SINE MIR -9 253 153 2055 138 33 3 chr6 136762209 136762542 -45652700 + MER7A DNA MER2_type 1 341 -5 6519 151 45 13 chr6 136763121 136763717 -45651525 - Tigger3b DNA MER2_type -1798 1230 654 2186 121 3 3 chr6 136763717 136764024 -45651218 - AluSx SINE Alu -5 307 1 6519 151 45 13 chr6 136764024 136764619 -45650623 - Tigger3b DNA MER2_type -2374 654 2 28 0 0 0 chr6 136765242 136765270 -45649972 + AT_rich Low_complexity Low_complexity 1 28 0 186 71 0 0 chr6 136765975 136766003 -45649239 + (T)n Simple_repeat Simple_repeat 1 28 0 218 236 90 22 chr6 136766072 136766161 -45649081 - MIR SINE MIR -101 161 67 6818 64 9 2 chr6 136766276 136767554 -45647688 - L1PA6 LINE L1 -14 6140 4852 5395 64 13 0 chr6 136767556 136768272 -45646970 + L1PA6 LINE L1 4142 4866 -1280 352 269 126 59 chr6 136768614 136768885 -45646357 - L1MC4a LINE L1 -1911 5897 5609 416 214 25 24 chr6 136770515 136770642 -45644600 - MLT1G LTR MaLR -4 620 496 316 281 156 47 chr6 136770634 136770826 -45644416 - MLT1G LTR MaLR -185 370 158 * 2390 61 0 0 chr6 136770841 136771137 -45644105 - AluY SINE Alu -15 296 1 612 242 89 32 chr6 136772240 136772593 -45642649 - L1ME1 LINE L1 -121 6114 5259 523 227 42 42 chr6 136772599 136772837 -45642405 - L1ME1 LINE L1 -3187 3028 2791 1598 238 68 51 chr6 136772837 136773370 -45641872 + MLT1F LTR MaLR 1 542 0 1098 265 76 18 chr6 136773403 136774025 -45641217 - L1ME1 LINE L1 -3605 2610 1999 557 224 40 13 chr6 136775001 136775153 -45640089 - L1M4 LINE L1 -3857 2289 2134 186 316 10 14 chr6 136776354 136776444 -45638798 + MIR SINE MIR 79 171 -37 12365 138 29 104 chr6 136776572 136779391 -45635851 - L1P LINE L1 -3538 2608 1 7357 31 0 7 chr6 136779393 136781069 -45634173 + L1PA4 LINE L1 4514 6183 0 5844 52 4 0 chr6 136781171 136781906 -45633336 + L1PA7 LINE L1 5417 6154 0 326 236 36 71 chr6 136782258 136782398 -45632844 + MLT1K LTR MaLR 448 582 -6 930 101 22 17 chr6 136782461 136782639 -45632603 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 834 88 41 12 chr6 136782654 136782825 -45632417 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 788 11 0 0 chr6 136782897 136782990 -45632252 + L1PA4 LINE L1 6060 6152 -3 22 56 0 0 chr6 136783532 136783568 -45631674 + AT_rich Low_complexity Low_complexity 1 36 0 617 326 34 0 chr6 136784019 136784197 -45631045 - MIR SINE MIR -2 260 77 1171 253 100 54 chr6 136784197 136784695 -45630547 + L1M4 LINE L1 15 535 -6007 246 105 0 0 chr6 136784787 136784825 -45630417 + (CA)n Simple_repeat Simple_repeat 1 38 0 245 313 50 20 chr6 136785275 136785312 -45629930 - LTR40a LTR ERVL -30 489 455 933 23 47 0 chr6 136785312 136785441 -45629801 + (TAGA)n Simple_repeat Simple_repeat 3 137 0 245 313 50 20 chr6 136785441 136785502 -45629740 - LTR40a LTR ERVL -64 455 388 9546 107 6 1 chr6 136786360 136787767 -45627475 + L1P LINE L1 2955 4369 -1777 7143 188 52 34 chr6 136788093 136789706 -45625536 - MER52A LTR ERV1 -2 1753 1 306 211 66 26 chr6 136789899 136789975 -45625267 + MIR SINE MIR 122 200 -62 373 327 150 0 chr6 136791272 136791425 -45623817 - MIR3 SINE MIR 0 208 33 1040 336 60 3 chr6 136791628 136792012 -45623230 + L2 LINE L2 2493 2898 -416 247 225 382 0 chr6 136792017 136792106 -45623136 - FLAM_A SINE Alu -8 125 3 544 327 90 35 chr6 136792106 136792507 -45622735 + L2 LINE L2 2889 3311 -2 2358 66 0 0 chr6 136792855 136793142 -45622100 - AluY SINE Alu -24 287 1 301 115 311 0 chr6 136793263 136793324 -45621918 - MADE1 DNA Mariner 0 80 1 242 303 57 25 chr6 136793447 136793569 -45621673 + L1P LINE L1 4887 5012 -1134 230 290 0 47 chr6 136794203 136794310 -45620932 + (CATA)n Simple_repeat Simple_repeat 4 105 0 699 34 0 0 chr6 136795868 136795956 -45619286 - L1PA2 LINE L1 0 6155 6068 240 254 221 8 chr6 136796065 136796187 -45619055 + MIR SINE MIR 110 257 -5 2653 29 0 6 chr6 136796223 136796534 -45618708 + AluY SINE Alu 1 309 -2 403 407 102 0 chr6 136796676 136797008 -45618234 - L2 LINE L2 -552 2762 2397 775 28 19 9 chr6 136797026 136797132 -45618110 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 450 258 50 44 chr6 136797584 136797743 -45617499 + MIR SINE MIR 84 243 -19 193 319 94 38 chr6 136797836 136797996 -45617246 + L2 LINE L2 2148 2316 -998 2700 84 127 0 chr6 136798042 136798436 -45616806 + MLT2A1 LTR ERVL 1 444 0 14842 58 13 19 chr6 136798436 136800376 -45614866 + HERVL-A1 LTR ERVL 1 1929 -3725 192 318 157 32 chr6 136800459 136800676 -45614566 + L2 LINE L2 2404 2647 -667 242 207 162 36 chr6 136800719 136800743 -45614499 - L1MA9 LINE L1 -8 6304 6281 434 269 29 47 chr6 136800743 136800914 -45614328 - L1ME1 LINE L1 -44 6122 5955 839 305 43 14 chr6 136801610 136801892 -45613350 - L2 LINE L2 -1139 2175 1886 408 242 23 47 chr6 136801910 136802038 -45613204 + MIR SINE MIR 117 241 -21 21 0 0 0 chr6 136803799 136803820 -45611422 + AT_rich Low_complexity Low_complexity 1 21 0 2115 111 7 0 chr6 136804591 136804880 -45610362 + AluSg1 SINE Alu 1 291 -18 184 204 0 20 chr6 136806351 136806400 -45608842 - L3b LINE CR1 -381 1202 1155 700 299 91 30 chr6 136807135 136807671 -45607571 - L3 LINE CR1 -53 1524 899 1210 229 35 60 chr6 136807842 136808208 -45607034 + MLT1A1 LTR MaLR 1 357 -8 209 56 0 28 chr6 136808559 136808595 -45606647 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2101 212 32 26 chr6 136808682 136809183 -45606059 - MLT1D LTR MaLR 0 505 2 1634 184 30 13 chr6 136812384 136812683 -45602559 + AluJb SINE Alu 1 304 -8 1691 278 205 21 chr6 136813546 136814762 -45600480 + L2 LINE L2 1894 3313 0 1744 225 80 17 chr6 136815132 136815607 -45599635 + L1MCa LINE L1 104 608 -5818 3861 213 108 26 chr6 136815666 136816349 -45598893 + L1MCb LINE L1 499 1125 -5620 2218 103 0 10 chr6 136816349 136816659 -45598583 + AluSc SINE Alu 3 309 0 3861 213 108 26 chr6 136816659 136817743 -45597499 + L1MCb LINE L1 1125 2521 -4224 183 42 0 0 chr6 136818660 136818684 -45596558 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 198 0 0 0 chr6 136818683 136818705 -45596537 + (GA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr6 136819520 136819542 -45595700 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr6 136819815 136819848 -45595394 + AT_rich Low_complexity Low_complexity 1 33 0 2051 184 3 11 chr6 136820146 136820520 -45594722 + MLT2C1 LTR ERVL 1 371 -26 27 29 0 0 chr6 136821154 136821188 -45594054 + AT_rich Low_complexity Low_complexity 1 34 0 418 333 121 32 chr6 136821411 136821907 -45593335 + HAL1 LINE L1 155 694 -1813 960 52 0 0 chr6 136822182 136822298 -45592944 - AluY SINE Alu -186 125 10 1101 58 0 0 chr6 136822298 136822467 -45592775 + AluY SINE Alu 145 313 0 1582 278 189 29 chr6 136822476 136823657 -45591585 + HAL1 LINE L1 973 2342 -165 26 0 0 0 chr6 136823805 136823831 -45591411 + AT_rich Low_complexity Low_complexity 1 26 0 1499 80 5 10 chr6 136826183 136826382 -45588860 + AluSc SINE Alu 1 198 -111 335 107 0 0 chr6 136826382 136826438 -45588804 + AluSc SINE Alu 244 299 0 294 376 38 23 chr6 136827705 136827838 -45587404 + MIR3 SINE MIR 33 167 -41 1790 167 0 7 chr6 136827934 136828228 -45587014 + AluJb SINE Alu 21 312 0 591 144 81 0 chr6 136828250 136828361 -45586881 + L1MB3 LINE L1 6062 6181 -2 302 245 117 0 chr6 136828380 136828474 -45586768 + MER103 DNA DNA 61 165 -1 22 0 0 0 chr6 136828786 136828808 -45586434 + AT_rich Low_complexity Low_complexity 1 22 0 2375 105 0 0 chr6 136830288 136830594 -45584648 - AluSx SINE Alu -6 306 1 1775 145 0 44 chr6 136831799 136832123 -45583119 + AluSx SINE Alu 1 311 0 609 299 32 48 chr6 136832823 136833074 -45582168 + MIR SINE MIR 14 260 -2 374 280 35 42 chr6 136834887 136835030 -45580212 - MIR SINE MIR 0 262 121 231 146 0 0 chr6 136835115 136835156 -45580086 + (TA)n Simple_repeat Simple_repeat 2 42 0 29 28 0 0 chr6 136835160 136835196 -45580046 + AT_rich Low_complexity Low_complexity 1 36 0 306 265 49 5 chr6 136835396 136835574 -45579668 - L1MC/D LINE L1 -456 5665 5592 803 212 13 0 chr6 136837026 136837177 -45578065 - FRAM SINE Alu -23 153 1 240 162 95 27 chr6 136837457 136837531 -45577711 + L1MB8 LINE L1 6096 6174 -4 271 316 21 0 chr6 136837594 136837689 -45577553 + L1ME4a LINE L1 5518 5614 -507 406 261 141 5 chr6 136837712 136837896 -45577346 + L1ME4a LINE L1 5658 5866 -255 339 256 76 6 chr6 136837928 136838100 -45577142 + L1ME4a LINE L1 5935 6118 -3 3522 154 13 15 chr6 136838135 136838740 -45576502 + L1MC1 LINE L1 5667 6270 -63 230 170 151 19 chr6 136840070 136840123 -45575119 + LTR40a LTR ERVL 1 60 -459 313 273 210 17 chr6 136840240 136840416 -45574826 + LTR40a LTR ERVL 179 388 -131 759 142 94 84 chr6 136840848 136841102 -45574140 + MER33 DNA MER1_type 1 246 -78 815 248 106 15 chr6 136841122 136841604 -45573638 + MLT1F LTR MaLR 1 565 -2 347 169 15 0 chr6 136841604 136841669 -45573573 + MER33 DNA MER1_type 258 323 -1 340 282 135 32 chr6 136841677 136841833 -45573409 + MIR SINE MIR 60 231 -31 3606 241 41 41 chr6 136842846 136843896 -45571346 + L1M4 LINE L1 90 1139 -5403 8149 193 12 25 chr6 136843899 136845400 -45569842 + L1PB2 LINE L1 3240 4759 -1392 353 22 22 0 chr6 136845400 136845446 -45569796 + (TTA)n Simple_repeat Simple_repeat 3 49 0 7356 31 0 0 chr6 136845446 136846953 -45568289 - L1PA4 LINE L1 -18 6137 4637 8149 193 12 25 chr6 136846953 136848386 -45566856 + L1PB2 LINE L1 4757 6132 -19 180 0 0 0 chr6 136848394 136848414 -45566828 + (TAA)n Simple_repeat Simple_repeat 2 21 0 603 228 0 19 chr6 136848417 136848575 -45566667 + L1M4 LINE L1 1128 1282 -5260 932 229 39 25 chr6 136848589 136848873 -45566369 + L1M4 LINE L1 1423 1710 -4832 2186 161 24 20 chr6 136848895 136849373 -45565869 + L1MC/D LINE L1 5186 5666 -667 378 68 0 85 chr6 136849375 136849434 -45565808 - Tigger5 DNA MER2_type -118 2205 2152 * 586 194 23 47 chr6 136849405 136849534 -45565708 - Tigger5 DNA MER2_type -2197 126 1 2260 204 42 7 chr6 136849534 136850103 -45565139 + L1M4 LINE L1 2763 3351 -3293 191 375 90 49 chr6 136850572 136850817 -45564425 - L2 LINE L2 -19 3294 3040 820 214 11 17 chr6 136850825 136851003 -45564239 + MER5B DNA MER1_type 2 178 0 728 266 111 9 chr6 136851209 136851435 -45563807 - MIR SINE MIR 0 262 14 355 350 55 78 chr6 136851557 136851673 -45563569 - L2 LINE L2 0 3272 3155 1176 202 4 26 chr6 136851673 136851901 -45563341 + MER58A DNA MER1_type 1 223 -1 355 350 55 78 chr6 136851901 136852184 -45563058 - L2 LINE L2 -117 3155 2882 263 238 25 38 chr6 136853839 136853919 -45561323 - LTR33 LTR ERVL -8 513 435 383 246 172 8 chr6 136853935 136854069 -45561173 - LTR33 LTR ERVL -311 210 55 462 335 99 82 chr6 136854560 136855013 -45560229 - L2 LINE L2 -1 3271 2811 354 195 327 9 chr6 136855179 136855292 -45559950 + MER5A DNA MER1_type 36 184 -5 207 0 0 0 chr6 136858185 136858208 -45557034 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr6 136858364 136858395 -45556847 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr6 136858746 136858781 -45556461 + AT_rich Low_complexity Low_complexity 1 35 0 2303 100 3 3 chr6 136859014 136859324 -45555918 + AluSx SINE Alu 3 312 0 498 210 249 5 chr6 136859341 136859546 -45555696 + MER5C DNA MER1_type 69 323 -1 2000 120 45 0 chr6 136859939 136860230 -45555012 - AluSx SINE Alu -8 304 1 553 346 34 26 chr6 136860812 136861081 -45554161 - L3 LINE CR1 -72 1505 1235 180 139 0 28 chr6 136861075 136861111 -45554131 + L3 LINE CR1 1379 1413 -164 * 218 343 133 9 chr6 136861115 136861220 -45554022 + MER91C DNA MER1_type 1 118 -22 2739 184 14 92 chr6 136862288 136862939 -45552303 - MER77 LTR ERV1 0 605 6 242 349 30 15 chr6 136862977 136863109 -45552133 + LTR37B LTR ERV1 7 140 -328 341 229 64 11 chr6 136863277 136863428 -45551814 + LTR37B LTR ERV1 242 443 -23 24 67 0 0 chr6 136864036 136864081 -45551161 + AT_rich Low_complexity Low_complexity 1 45 0 281 26 26 0 chr6 136864460 136864498 -45550744 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 623 290 106 35 chr6 136864796 136865165 -45550077 - MLT1J LTR MaLR -18 493 99 189 0 0 0 chr6 136865434 136865455 -45549787 + (CA)n Simple_repeat Simple_repeat 2 22 0 558 261 47 47 chr6 136865530 136865741 -45549501 + MIR SINE MIR 52 262 0 182 352 62 57 chr6 136866374 136866567 -45548675 - L2 LINE L2 -4 3309 3116 2038 199 64 0 chr6 136866680 136867071 -45548171 - MER47B DNA MER2_type -2 416 1 2448 259 83 24 chr6 136867139 136867370 -45547872 + L1MDa LINE L1 18 234 -6306 237 65 0 0 chr6 136867370 136867401 -45547841 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2448 259 83 24 chr6 136867401 136867960 -45547282 + L1MDa LINE L1 234 1005 -5535 * 6722 236 60 57 chr6 136867941 136869801 -45545441 + L1MDa LINE L1 2462 4326 -2214 1990 131 35 0 chr6 136869801 136870091 -45545151 + AluSx SINE Alu 2 301 -11 6722 236 60 57 chr6 136870091 136871102 -45544140 + L1MDa LINE L1 4326 5332 -1208 1532 138 15 15 chr6 136871131 136871391 -45543851 - Tigger2 DNA MER2_type -16 2702 2443 3953 155 36 14 chr6 136871434 136872162 -45543080 - Tigger2 DNA MER2_type -1974 744 1 822 169 26 19 chr6 136872227 136872381 -45542861 + L1MD1 LINE L1 6005 6159 -83 1274 179 120 43 chr6 136872381 136872682 -45542560 + MER1B DNA MER1_type 1 324 -15 595 103 0 31 chr6 136872685 136872782 -45542460 + L1MD1 LINE L1 6144 6237 -5 996 201 25 0 chr6 136873035 136873234 -45542008 + MER3 DNA MER1_type 6 209 0 245 329 79 36 chr6 136874006 136874146 -45541096 + MER5B DNA MER1_type 27 172 -6 4263 145 34 14 chr6 136874403 136875417 -45539825 - Tigger1 DNA MER2_type -1 2417 1 22 0 0 0 chr6 136878077 136878099 -45537143 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 136878865 136878886 -45536356 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 136879376 136879405 -45535837 + AT_rich Low_complexity Low_complexity 1 29 0 1266 128 32 14 chr6 136879622 136879840 -45535402 + MER47A DNA MER2_type 22 243 -123 30 45 0 0 chr6 136880892 136880936 -45534306 + AT_rich Low_complexity Low_complexity 1 44 0 384 257 28 28 chr6 136880940 136881074 -45534168 + (TA)n Simple_repeat Simple_repeat 2 138 -42 2020 150 40 6 chr6 136881074 136881428 -45533814 + MER47A DNA MER2_type 1 366 0 384 257 28 28 chr6 136881428 136881472 -45533770 + (TA)n Simple_repeat Simple_repeat 137 180 0 192 364 0 59 chr6 136881816 136881934 -45533308 + L2 LINE L2 2230 2340 -974 1230 195 43 123 chr6 136882203 136882618 -45532624 - MLT1B LTR MaLR -8 382 1 211 349 18 37 chr6 136882823 136882932 -45532310 + L2 LINE L2 2985 3091 -181 219 289 0 0 chr6 136883058 136883110 -45532132 + GA-rich Low_complexity Low_complexity 2 53 0 315 359 61 0 chr6 136883488 136883706 -45531536 + L2 LINE L2 2785 3014 -299 1120 201 91 64 chr6 136883814 136883874 -45531368 + L1MB8 LINE L1 4986 5043 -1131 2266 219 93 40 chr6 136883874 136884445 -45530797 + MER77 LTR ERV1 3 603 -2 1120 201 91 64 chr6 136884445 136884931 -45530311 + L1MB8 LINE L1 5043 5556 -618 1765 233 49 4 chr6 136884935 136885385 -45529857 + L1MB8 LINE L1 5709 6178 0 862 317 146 6 chr6 136885504 136885962 -45529280 - L2 LINE L2 -213 3059 2542 300 246 0 0 chr6 136886032 136886101 -45529141 + L1ME4a LINE L1 5969 6037 -84 623 328 92 19 chr6 136886481 136886850 -45528392 - MLT1I LTR MaLR 0 409 14 719 273 106 75 chr6 136887008 136887648 -45527594 + Charlie7 DNA MER1_type 1 660 -1952 286 243 144 0 chr6 136887666 136887777 -45527465 + Charlie7 DNA MER1_type 2190 2316 -296 2203 137 16 11 chr6 136887861 136888242 -45527000 + L1MA4 LINE L1 5912 6294 -6 35 71 0 0 chr6 136888291 136888361 -45526881 + AT_rich Low_complexity Low_complexity 1 70 0 1138 307 97 37 chr6 136888489 136888759 -45526483 + L2 LINE L2 2247 2499 -814 2124 130 0 16 chr6 136888759 136889075 -45526167 + AluSx SINE Alu 1 311 -1 1138 307 97 37 chr6 136889075 136889576 -45525666 + L2 LINE L2 2499 3062 -251 769 294 107 15 chr6 136889592 136890066 -45525176 + L2 LINE L2 2749 3273 -40 307 296 98 78 chr6 136890122 136890480 -45524762 - L1ME LINE L1 -403 5718 5354 26 0 0 0 chr6 136890610 136890636 -45524606 + AT_rich Low_complexity Low_complexity 1 26 0 815 313 120 20 chr6 136891624 136892438 -45522804 + L1M4 LINE L1 2562 3757 -2389 208 162 15 15 chr6 136892475 136892543 -45522699 + (TA)n Simple_repeat Simple_repeat 2 69 0 * 348 314 139 10 chr6 136892541 136892844 -45522398 + L1M4 LINE L1 3817 4158 -1988 385 300 50 27 chr6 136893213 136893510 -45521732 + L1ME3A LINE L1 3472 3775 -2371 2137 273 81 48 chr6 136893867 136894203 -45521039 + L1ME3A LINE L1 4349 4673 -1497 407 306 29 17 chr6 136894203 136894376 -45520866 + MER5B DNA MER1_type 1 175 -3 2137 273 81 48 chr6 136894376 136895722 -45519520 + L1ME3A LINE L1 4673 6099 -71 435 294 53 59 chr6 136895841 136895952 -45519290 + L1M4 LINE L1 4548 4658 -1488 4411 143 62 16 chr6 136895952 136896772 -45518470 + L1MA4 LINE L1 5437 6294 -6 435 294 53 59 chr6 136896772 136897249 -45517993 + L1M4 LINE L1 4658 5132 -1014 239 0 32 0 chr6 136897414 136897445 -45517797 + (TA)n Simple_repeat Simple_repeat 1 32 0 1983 155 7 7 chr6 136899553 136899863 -45515379 + AluJo SINE Alu 1 310 -2 283 370 70 20 chr6 136900557 136900757 -45514485 + L2 LINE L2 2394 2603 -711 458 270 174 41 chr6 136900784 136901129 -45514113 + L1M4 LINE L1 4673 5063 -1083 324 292 33 9 chr6 136902172 136902424 -45512818 + L1MCc LINE L1 1370 2109 -4753 285 125 0 0 chr6 136902446 136902502 -45512740 + (TC)n Simple_repeat Simple_repeat 2 57 0 1283 268 29 15 chr6 136902548 136903075 -45512167 + L1MCc LINE L1 1976 2509 -4613 227 155 39 10 chr6 136903442 136903545 -45511697 + (TTAAA)n Simple_repeat Simple_repeat 1 106 0 371 291 73 24 chr6 136903605 136903894 -45511348 + L1MCc LINE L1 3003 3305 -3636 487 375 53 26 chr6 136904730 136905221 -45510021 - MLT1K LTR MaLR -51 537 34 216 0 0 0 chr6 136905342 136905366 -45509876 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 345 91 0 0 chr6 136905393 136905437 -45509805 - AluYb8 SINE Alu -164 144 101 207 317 50 0 chr6 136905713 136905773 -45509469 - L2 LINE L2 -9 3263 3201 42 36 0 0 chr6 136906538 136906594 -45508648 + AT_rich Low_complexity Low_complexity 1 56 0 2247 125 35 14 chr6 136906776 136907143 -45508099 + THE1C LTR MaLR 1 375 0 3656 175 25 78 chr6 136908132 136909050 -45506192 - L1MC3 LINE L1 0 7785 6917 741 191 19 19 chr6 136909048 136909210 -45506032 - L1MC3 LINE L1 -1162 6623 6462 * 2839 189 18 100 chr6 136909207 136909869 -45505373 + MST-int LTR MaLR 921 1528 -123 892 100 39 8 chr6 136909870 136910000 -45505242 + LTR8 LTR ERV1 2 135 -556 246 281 52 10 chr6 136910544 136910640 -45504602 - MLT1K LTR MaLR -342 246 147 1949 133 52 6 chr6 136911448 136911793 -45503449 - MER46B DNA MER2_type 0 236 1 1849 151 28 6 chr6 136911900 136912229 -45503013 - MER7A DNA MER2_type -1 345 11 378 74 0 0 chr6 136913076 136913130 -45502112 + (GA)n Simple_repeat Simple_repeat 1 54 0 2268 114 0 0 chr6 136913215 136913523 -45501719 + AluSx SINE Alu 1 308 -4 21 57 0 0 chr6 136913615 136913650 -45501592 + AT_rich Low_complexity Low_complexity 1 35 0 33 43 0 0 chr6 136913678 136913725 -45501517 + AT_rich Low_complexity Low_complexity 1 47 0 222 174 0 0 chr6 136913749 136913795 -45501447 + (TA)n Simple_repeat Simple_repeat 1 46 0 389 213 43 21 chr6 136914216 136914310 -45500932 + LTR67 LTR ERVL 450 545 -12 260 156 16 62 chr6 136914368 136914432 -45500810 - MADE1 DNA Mariner 0 80 20 273 359 0 0 chr6 136916421 136916499 -45498743 - MIR SINE MIR -93 115 38 202 262 49 0 chr6 136916741 136916802 -45498440 + MIR SINE MIR 57 120 -88 1006 228 61 29 chr6 136916804 136917116 -45498126 + L1MB7 LINE L1 5863 6184 0 199 301 0 41 chr6 136917127 136917200 -45498042 + MIR SINE MIR 101 170 -92 492 125 135 0 chr6 136918799 136918895 -45496347 + L1MB4 LINE L1 6064 6172 -8 2210 117 3 0 chr6 136919010 136919308 -45495934 - AluSx SINE Alu -13 299 1 549 265 28 146 chr6 136919361 136919648 -45495594 + MLT1G LTR MaLR 40 322 -273 364 276 99 7 chr6 136919684 136919836 -45495406 + MLT1G LTR MaLR 370 535 -7 583 304 40 27 chr6 136920006 136920302 -45494940 + MLT1G1-int LTR MaLR 303 602 -769 398 281 50 114 chr6 136920855 136921215 -45494027 + MLT1G1-int LTR MaLR 1032 1368 -3 597 266 36 110 chr6 136921218 136921553 -45493689 + MLT1G1 LTR MaLR 1 310 -285 469 167 8 75 chr6 136921602 136921722 -45493520 + MLT1G1 LTR MaLR 391 502 -65 995 342 71 24 chr6 136921807 136922603 -45492639 + L2 LINE L2 2476 3312 -1 343 346 25 63 chr6 136922706 136922943 -45492299 + MLT1J LTR MaLR 109 336 -175 3581 169 62 32 chr6 136922954 136923711 -45491531 + L1MC3 LINE L1 6228 7007 -778 41799 57 5 3 chr6 136923711 136929850 -45485392 + L1PA5 LINE L1 1 6147 -7 288 91 0 0 chr6 136929895 136929939 -45485303 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 290 196 0 0 chr6 136929939 136929995 -45485247 + L1MC3 LINE L1 7048 7103 -682 228 317 0 12 chr6 136929999 136930081 -45485161 + MLT1F1 LTR MaLR 45 125 -442 613 171 16 16 chr6 136930081 136930204 -45485038 + L1MC3 LINE L1 7189 7311 -474 2383 202 9 16 chr6 136930375 136930888 -45484354 - LTR27 LTR ERV1 -141 495 7 1829 193 121 2 chr6 136930892 136931323 -45483919 + L1MC3 LINE L1 7304 7785 0 32 26 0 0 chr6 136933222 136933261 -45481981 + AT_rich Low_complexity Low_complexity 1 39 0 184 289 189 0 chr6 136933381 136933471 -45481771 + MIR SINE MIR 156 262 0 212 284 148 49 chr6 136933530 136933713 -45481529 - MIR SINE MIR -56 206 6 2037 129 7 0 chr6 136933816 136934124 -45481118 + AluSx SINE Alu 3 312 0 227 193 105 0 chr6 136934124 136934181 -45481061 + MER53 DNA DNA 127 189 0 258 160 0 0 chr6 136934772 136934822 -45480420 + (CAT)n Simple_repeat Simple_repeat 2 51 0 427 245 13 126 chr6 136935245 136935404 -45479838 + MIR SINE MIR 37 177 -85 180 0 0 0 chr6 136936476 136936496 -45478746 + (T)n Simple_repeat Simple_repeat 1 20 0 230 265 38 53 chr6 136937073 136937205 -45478037 + L1ME LINE L1 40 169 -5901 575 244 96 64 chr6 136937562 136937812 -45477430 + L1ME3A LINE L1 5457 5714 -456 1401 59 0 0 chr6 136937816 136937986 -45477256 - AluY SINE Alu -16 295 126 1360 261 28 34 chr6 136937986 136938453 -45476789 + L1ME3A LINE L1 5703 6166 -4 2561 253 24 12 chr6 136938472 136939137 -45476105 + L1MCb LINE L1 306 978 -5067 524 274 149 18 chr6 136939345 136939626 -45475616 + L2 LINE L2 2996 3313 0 488 264 77 60 chr6 136939686 136939868 -45475374 - MIR SINE MIR 0 262 78 2122 118 48 28 chr6 136940026 136940381 -45474861 - THE1B LTR MaLR -2 362 1 678 182 144 6 chr6 136941940 136942121 -45473121 - MIR SINE MIR 0 262 57 977 339 29 21 chr6 136942627 136943010 -45472232 + LTR16A LTR ERVL 57 442 -8 2198 314 44 32 chr6 136943018 136944161 -45471081 + HERV16 LTR ERVL 1 1156 -3840 1663 307 52 17 chr6 136944191 136944706 -45470536 + HERV16 LTR ERVL 1707 2203 -2793 425 202 0 0 chr6 136944706 136944805 -45470437 + L1MB8 LINE L1 6078 6176 -2 1663 307 52 17 chr6 136944805 136945383 -45469859 + HERV16 LTR ERVL 2203 2874 -2122 2247 108 0 0 chr6 136945393 136945690 -45469552 + AluSc SINE Alu 1 297 -12 1065 321 61 56 chr6 136945841 136946840 -45468402 + HERV16 LTR ERVL 2950 3953 -1701 875 363 44 34 chr6 136946949 136947941 -45467301 + HERV16 LTR ERVL 4310 5311 -453 449 317 35 6 chr6 136948176 136948526 -45466716 + LTR16A LTR ERVL 61 450 0 1887 147 0 4 chr6 136949757 136950058 -45465184 + AluJo SINE Alu 7 306 0 2168 105 3 3 chr6 136950073 136950369 -45464873 + AluSc SINE Alu 1 296 -13 259 146 21 0 chr6 136950751 136950799 -45464443 - MER58 DNA MER1_type -6 2414 2366 429 269 29 69 chr6 136950824 136950899 -45464343 - MER58 DNA MER1_type -172 169 93 2269 123 0 3 chr6 136950899 136951208 -45464034 - AluSx SINE Alu -4 308 1 429 269 29 69 chr6 136951208 136951307 -45463935 - MER58 DNA MER1_type -248 93 2 1219 364 31 14 chr6 136951372 136952198 -45463044 - HERVL LTR ERVL -2055 3599 2760 1006 277 136 13 chr6 136952851 136952912 -45462330 - LTR33 LTR ERVL -1 520 468 189 0 0 0 chr6 136952912 136952933 -45462309 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1006 277 136 13 chr6 136952933 136953326 -45461916 - LTR33 LTR ERVL -53 468 10 289 113 57 19 chr6 136953610 136953663 -45461579 - HAL1 LINE L1 -860 1647 1593 1541 199 109 25 chr6 136953681 136954112 -45461130 + MLT1C LTR MaLR 1 467 0 233 286 16 16 chr6 136954820 136954883 -45460359 - L2 LINE L2 -12 3260 3198 204 275 150 10 chr6 136954924 136955064 -45460178 + L2 LINE L2 2777 2934 -338 8610 101 42 6 chr6 136955313 136956556 -45458686 + HSMAR1 DNA Mariner 1 1287 0 22 0 0 0 chr6 136956716 136956738 -45458504 + AT_rich Low_complexity Low_complexity 1 22 0 1103 213 25 101 chr6 136957338 136957774 -45457468 + MLT1C LTR MaLR 59 461 -6 285 270 44 57 chr6 136957887 136958046 -45457196 + HERV16 LTR ERVL 5275 5431 -333 636 183 19 16 chr6 136958077 136958221 -45457021 - MLT1E1 LTR MaLR 0 654 438 2492 235 76 54 chr6 136958249 136958561 -45456681 - L1MDa LINE L1 -2522 4018 3715 2686 161 47 21 chr6 136958561 136959094 -45456148 - L1PA16 LINE L1 -2 6164 5618 2492 235 76 54 chr6 136959094 136960778 -45454464 - L1MDa LINE L1 -2825 3715 1963 317 264 88 11 chr6 136960847 136960938 -45454304 + MIR3 SINE MIR 108 205 -3 477 295 73 54 chr6 136961802 136962266 -45452976 + Charlie8 DNA MER1_type 77 549 -1868 2291 105 0 0 chr6 136962451 136962775 -45452467 + AluSg SINE Alu 1 310 0 2284 105 0 0 chr6 136963797 136964093 -45451149 + AluSq SINE Alu 3 298 -15 3023 78 45 7 chr6 136964489 136964915 -45450327 + MLT2A1 LTR ERVL 3 444 0 256 271 44 30 chr6 136965865 136965987 -45449255 + MIR SINE MIR 70 192 -62 25 0 0 0 chr6 137017806 137017831 -45397411 + AT_rich Low_complexity Low_complexity 1 25 0 1903 162 3 0 chr6 137018731 137019034 -45396208 - AluSx SINE Alu -5 307 4 327 311 104 95 chr6 137021876 137022117 -45393125 + L2 LINE L2 3030 3272 0 206 349 66 53 chr6 137023892 137024044 -45391198 - MIR SINE MIR -57 205 52 21 36 0 0 chr6 137024119 137024147 -45391095 + AT_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr6 137024389 137024432 -45390810 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 137024795 137024817 -45390425 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr6 137027768 137027803 -45387439 + AT_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr6 137028418 137028443 -45386799 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 25 31 0 0 chr6 137028524 137028556 -45386686 + AT_rich Low_complexity Low_complexity 1 32 0 255 230 26 44 chr6 137028810 137028923 -45386319 + (CATATA)n Simple_repeat Simple_repeat 5 115 0 31 0 0 0 chr6 137029305 137029336 -45385906 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 137030592 137030613 -45384629 + AT_rich Low_complexity Low_complexity 1 21 0 239 208 0 104 chr6 137032352 137032429 -45382813 - MIR SINE MIR -108 154 86 210 158 0 0 chr6 137033297 137033335 -45381907 + (TA)n Simple_repeat Simple_repeat 2 39 0 1159 279 53 104 chr6 137035217 137036246 -45378996 + L2 LINE L2 1802 2778 -536 245 387 85 0 chr6 137036236 137036342 -45378900 + L2 LINE L2 3157 3271 -1 * 254 358 52 21 chr6 137036606 137036794 -45378448 + MIR SINE MIR 22 212 -50 219 395 137 12 chr6 137037749 137038005 -45377237 + L2 LINE L2 2623 2910 -404 326 296 144 0 chr6 137038079 137038211 -45377031 - L1ME LINE L1 -556 5589 5439 939 230 55 63 chr6 137038393 137038859 -45376383 - MER39 LTR ERV1 -40 667 1 246 260 80 0 chr6 137038859 137038959 -45376283 - L1ME LINE L1 -936 5193 5086 681 291 56 58 chr6 137039281 137039810 -45375432 - L1MEd LINE L1 -5051 1081 563 279 93 0 0 chr6 137039953 137039996 -45375246 + (TC)n Simple_repeat Simple_repeat 1 43 0 614 96 10 0 chr6 137039996 137040100 -45375142 + (TA)n Simple_repeat Simple_repeat 2 106 0 198 410 35 21 chr6 137040360 137040504 -45374738 + L2 LINE L2 3123 3268 -4 566 264 126 0 chr6 137040798 137040980 -45374262 + MIR SINE MIR 50 254 -8 247 379 45 8 chr6 137041407 137041539 -45373703 - MIR3 SINE MIR -52 156 20 507 309 91 26 chr6 137041881 137042146 -45373096 - L2 LINE L2 -1 3312 3031 186 351 27 0 chr6 137043023 137043097 -45372145 + MIR3 SINE MIR 120 195 -13 22 0 0 0 chr6 137043328 137043350 -45371892 + AT_rich Low_complexity Low_complexity 1 22 0 2422 53 0 13 chr6 137043621 137043923 -45371319 + AluY SINE Alu 1 298 -13 300 313 97 0 chr6 137044080 137044214 -45371028 + MIR SINE MIR 70 216 -46 1616 175 0 51 chr6 137045921 137046236 -45369006 - AluJb SINE Alu -13 299 1 2112 109 10 14 chr6 137046793 137047087 -45368155 + AluSx SINE Alu 1 293 -19 1604 232 78 19 chr6 137047803 137048278 -45366964 - MLT1D LTR MaLR 0 505 3 202 310 17 0 chr6 137048640 137048698 -45366544 + L3 LINE CR1 1240 1298 -279 512 284 62 6 chr6 137048713 137048875 -45366367 + MIR SINE MIR 76 246 -16 229 261 135 9 chr6 137049786 137049867 -45365375 - MIR SINE MIR -18 244 144 1896 141 21 0 chr6 137049867 137050158 -45365084 - AluSx SINE Alu -15 297 1 229 261 135 9 chr6 137050158 137050187 -45365055 - MIR SINE MIR -118 144 120 188 340 50 44 chr6 137050196 137050355 -45364887 + L2 LINE L2 2595 2754 -560 1981 137 80 53 chr6 137051285 137051651 -45363591 + MSTB LTR MaLR 1 382 -44 1609 142 87 0 chr6 137051651 137051956 -45363286 + AluSx SINE Alu 9 335 0 1981 137 80 53 chr6 137051956 137052003 -45363239 + MSTB LTR MaLR 382 426 0 1448 251 50 24 chr6 137052135 137052558 -45362684 - LTR16A1 LTR ERVL -9 448 15 1461 190 53 21 chr6 137055856 137056140 -45359102 + AluJo SINE Alu 1 293 -19 1947 122 22 0 chr6 137057356 137057656 -45357586 + AluSq SINE Alu 1 306 0 441 271 65 13 chr6 137057979 137058134 -45357108 + MER20B DNA MER1_type 1 163 -620 371 251 127 25 chr6 137058122 137058405 -45356837 + MER20B DNA MER1_type 472 783 0 * 1931 144 14 0 chr6 137059007 137059298 -45355944 - AluSq SINE Alu -18 295 1 25 65 0 0 chr6 137060151 137060197 -45355045 + AT_rich Low_complexity Low_complexity 1 46 0 572 308 100 9 chr6 137061185 137061516 -45353726 + L1MC/D LINE L1 5441 5801 -2007 28 0 0 0 chr6 137062551 137062579 -45352663 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr6 137063325 137063373 -45351869 + AT_rich Low_complexity Low_complexity 1 48 0 192 265 20 0 chr6 137063996 137064143 -45351099 + (TA)n Simple_repeat Simple_repeat 1 150 0 790 212 70 4 chr6 137064193 137064532 -45350710 - MLT1D-int LTR MaLR -894 477 2 2305 202 40 9 chr6 137064533 137065026 -45350216 - MLT1D LTR MaLR 0 593 1 546 358 40 15 chr6 137118428 137118827 -45296415 - L2 LINE L2 -355 2959 2551 265 328 103 25 chr6 137119204 137119408 -45295834 - L2 LINE L2 -354 2960 2741 21 36 0 0 chr6 137120192 137120220 -45295022 + AT_rich Low_complexity Low_complexity 1 28 0 236 261 62 15 chr6 137122742 137122807 -45292435 - L2 LINE L2 -22 3250 3183 243 0 0 0 chr6 137123214 137123241 -45292001 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2146 132 0 0 chr6 137124924 137125228 -45290014 + AluSg SINE Alu 1 304 -6 26 30 0 0 chr6 137125265 137125298 -45289944 + AT_rich Low_complexity Low_complexity 1 33 0 527 266 104 93 chr6 137126616 137126981 -45288261 + L2 LINE L2 2942 3310 -3 2162 153 9 0 chr6 137127936 137128270 -45286972 - MER1B DNA MER1_type 0 337 1 255 317 24 12 chr6 137128793 137128960 -45286282 + L1ME3A LINE L1 5152 5320 -826 498 322 45 19 chr6 137129207 137129471 -45285771 + L1ME3A LINE L1 5532 5802 -368 368 278 38 30 chr6 137129502 137129635 -45285607 + MER63 DNA MER1_type 1 760 -302 2376 78 0 0 chr6 137129912 137130226 -45285016 + AluY SINE Alu 1 314 0 23 33 0 0 chr6 137131842 137131872 -45283370 + AT_rich Low_complexity Low_complexity 1 30 0 381 255 32 0 chr6 137133165 137133259 -45281983 + MER5A DNA MER1_type 16 112 -77 352 328 123 32 chr6 137133320 137133662 -45281580 + MLT1L LTR MaLR 173 545 -70 22 56 0 0 chr6 137133845 137133881 -45281361 + AT_rich Low_complexity Low_complexity 1 36 0 1068 241 32 50 chr6 137135041 137135381 -45279861 + MLT2C1 LTR ERVL 13 346 -51 369 43 0 0 chr6 137135422 137135469 -45279773 + (TA)n Simple_repeat Simple_repeat 1 47 0 188 75 0 50 chr6 137135816 137135856 -45279386 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 1808 79 8 0 chr6 137136558 137136798 -45278444 + L1PA7 LINE L1 5913 6154 0 2260 76 0 45 chr6 137137036 137137350 -45277892 + AluY SINE Alu 3 302 -9 246 309 110 43 chr6 137137358 137137730 -45277512 + HAL1b LINE L1 212 608 -740 1890 224 88 78 chr6 137138061 137138995 -45276247 + L1MC5 LINE L1 6563 7521 -440 320 258 101 81 chr6 137139069 137139267 -45275975 + L1ME3A LINE L1 5960 6161 -9 525 325 125 28 chr6 137141032 137141456 -45273786 - L3 LINE CR1 -1 1576 1112 2256 210 41 12 chr6 137143024 137143533 -45271709 - L1ME2 LINE L1 -24 6140 5617 1179 166 14 5 chr6 137143602 137143825 -45271417 + L1MA4 LINE L1 6067 6291 -9 45 98 0 0 chr6 137143832 137143975 -45271267 + AT_rich Low_complexity Low_complexity 1 143 0 2789 152 31 3 chr6 137144207 137144824 -45270418 + MER44D DNA MER2_type 7 704 -1 2416 81 0 0 chr6 137145009 137145316 -45269926 - AluSg SINE Alu -3 307 1 334 282 68 10 chr6 137146222 137146325 -45268917 - MIR3 SINE MIR -14 194 86 27 49 0 0 chr6 137146597 137146638 -45268604 + AT_rich Low_complexity Low_complexity 1 41 0 255 61 0 0 chr6 137146855 137146888 -45268354 + (A)n Simple_repeat Simple_repeat 1 33 0 25 31 0 0 chr6 137148367 137148399 -45266843 + AT_rich Low_complexity Low_complexity 1 32 0 724 208 62 6 chr6 137149946 137150124 -45265118 + MER5A DNA MER1_type 1 188 -1 1690 108 0 39 chr6 137150438 137150698 -45264544 - AluSg SINE Alu 0 310 61 232 294 88 0 chr6 137151612 137151680 -45263562 - L2 LINE L2 -5 3267 3194 1446 157 0 121 chr6 137152041 137152373 -45262869 + AluJo SINE Alu 1 292 -10 374 341 29 57 chr6 137152722 137152968 -45262274 - L2 LINE L2 -850 2464 2226 512 260 136 62 chr6 137153683 137153925 -45261317 - MIR SINE MIR -1 261 2 21 0 0 0 chr6 137154009 137154030 -45261212 + AT_rich Low_complexity Low_complexity 1 21 0 192 317 124 25 chr6 137155690 137155851 -45259391 + MIR SINE MIR 37 213 -49 367 254 219 40 chr6 137155929 137155987 -45259255 + MIR SINE MIR 2 48 -214 1997 139 3 7 chr6 137155987 137156288 -45258954 - AluSx SINE Alu -12 300 1 367 254 219 40 chr6 137156288 137156430 -45258812 + MIR SINE MIR 48 238 -24 25 31 0 0 chr6 137156608 137156640 -45258602 + AT_rich Low_complexity Low_complexity 1 32 0 190 349 151 0 chr6 137156840 137156926 -45258316 + L2 LINE L2 3156 3254 -18 221 224 20 0 chr6 137156936 137156985 -45258257 + (TA)n Simple_repeat Simple_repeat 1 50 0 253 376 123 38 chr6 137157168 137157968 -45257274 - L2 LINE L2 -1262 2052 1185 23 54 0 0 chr6 137157968 137158005 -45257237 + AT_rich Low_complexity Low_complexity 1 37 0 1956 161 17 17 chr6 137158543 137158898 -45256344 + THE1A LTR MaLR 1 355 0 219 146 91 36 chr6 137159032 137159087 -45256155 + L2 LINE L2 3173 3230 -83 182 277 0 0 chr6 137161433 137161480 -45253762 + MIR SINE MIR 154 200 -62 24 32 0 0 chr6 137162965 137162996 -45252246 + AT_rich Low_complexity Low_complexity 1 31 0 2214 94 0 3 chr6 137163660 137163958 -45251284 - AluSc SINE Alu -12 297 1 430 234 298 0 chr6 137164355 137164496 -45250746 + MER5A DNA MER1_type 6 188 -1 283 304 86 101 chr6 137164693 137164950 -45250292 - L2 LINE L2 0 3272 3020 181 247 173 49 chr6 137164954 137165035 -45250207 - L2 LINE L2 -2 3270 3180 2229 87 17 0 chr6 137165116 137165405 -45249837 - AluSc SINE Alu -15 294 1 2109 81 11 0 chr6 137165629 137165912 -45249330 + AluSp SINE Alu 12 297 -16 207 346 77 0 chr6 137165934 137165984 -45249258 - L2 LINE L2 -493 2821 2776 195 42 0 0 chr6 137165984 137166008 -45249234 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 207 346 77 0 chr6 137166008 137166087 -45249155 - L2 LINE L2 -538 2776 2682 363 307 214 25 chr6 137167243 137167752 -45247490 - L2 LINE L2 -68 3245 2624 263 274 16 0 chr6 137168122 137168184 -45247058 + (CATA)n Simple_repeat Simple_repeat 2 64 0 27 29 0 0 chr6 137168842 137168876 -45246366 + AT_rich Low_complexity Low_complexity 1 34 0 389 331 67 17 chr6 137168878 137169056 -45246186 - L2 LINE L2 -535 2779 2593 182 377 0 16 chr6 137169100 137169161 -45246081 + L2 LINE L2 3193 3252 -20 582 230 146 22 chr6 137170248 137170426 -45244816 + MER3 DNA MER1_type 6 205 -4 1549 225 53 10 chr6 137172015 137172433 -45242809 + MER63B DNA MER1_type 1 436 0 1071 161 30 0 chr6 137173154 137173322 -45241920 - FAM SINE Alu -2 173 1 2375 130 5 19 chr6 137173382 137173751 -45241491 + THE1B LTR MaLR 1 364 0 23 68 0 0 chr6 137174009 137174053 -45241189 + AT_rich Low_complexity Low_complexity 1 44 0 845 265 68 4 chr6 137174062 137174296 -45240946 - MIR SINE MIR -5 257 9 1803 188 34 6 chr6 137174460 137174812 -45240430 + MLT1A1 LTR MaLR 1 362 -3 190 267 67 33 chr6 137175151 137175211 -45240031 + MIR SINE MIR 17 78 -184 28 0 0 0 chr6 137178174 137178202 -45237040 + AT_rich Low_complexity Low_complexity 1 28 0 7091 53 6 6 chr6 137180729 137182041 -45233201 + L1PA5 LINE L1 4843 6154 0 361 267 87 63 chr6 137183722 137183928 -45231314 - MIR SINE MIR -19 243 33 217 233 33 0 chr6 137184014 137184074 -45231168 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 288 338 0 0 chr6 137184411 137184482 -45230760 + MIR3 SINE MIR 127 197 -11 190 373 0 0 chr6 137186429 137186488 -45228754 + L3 LINE CR1 36 94 -1483 * 197 227 23 0 chr6 137186485 137186529 -45228713 + L2 LINE L2 3222 3266 -6 1947 137 0 3 chr6 137186782 137187125 -45228117 - AluSg SINE Alu 0 310 1 840 351 49 24 chr6 137187132 137187542 -45227700 + L3 LINE CR1 425 844 -733 22 0 0 0 chr6 137187875 137187897 -45227345 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr6 137189251 137189294 -45225948 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 137189594 137189615 -45225627 + AT_rich Low_complexity Low_complexity 1 21 0 2220 115 0 0 chr6 137193902 137194198 -45221044 + AluSx SINE Alu 1 296 -16 1798 143 32 0 chr6 137194198 137194477 -45220765 + AluSg SINE Alu 1 288 -22 198 0 0 0 chr6 137194484 137194506 -45220736 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 745 295 64 3 chr6 137194799 137195128 -45220114 - L1MEc LINE L1 -4918 1478 1130 1643 299 97 20 chr6 137195143 137195995 -45219247 - L1MEc LINE L1 -5357 1039 122 364 358 16 26 chr6 137197708 137197898 -45217344 + MER5A DNA MER1_type 1 188 -1 563 246 15 84 chr6 137199053 137199256 -45215986 + MER5A DNA MER1_type 1 189 0 328 300 172 65 chr6 137199517 137199643 -45215599 - MIR SINE MIR -10 252 141 1387 208 78 70 chr6 137199643 137200143 -45215099 + MLT1D LTR MaLR 1 504 -1 328 300 172 65 chr6 137200143 137200245 -45214997 - MIR SINE MIR -121 141 17 21 36 0 0 chr6 137200742 137200770 -45214472 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr6 137201058 137201083 -45214159 + AT_rich Low_complexity Low_complexity 1 25 0 222 368 104 14 chr6 137201654 137201798 -45213444 + MIR SINE MIR 50 206 -56 1029 235 22 64 chr6 137201835 137202048 -45213194 - MLT1A1 LTR MaLR 0 365 168 189 0 0 0 chr6 137202048 137202069 -45213173 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1029 235 22 64 chr6 137202069 137202166 -45213076 - MLT1A1 LTR MaLR -197 168 68 557 275 34 0 chr6 137203854 137204003 -45211239 - MER58 DNA MER1_type -2266 154 1 225 333 28 14 chr6 137204319 137204391 -45210851 + MIR SINE MIR 38 110 -98 450 286 81 62 chr6 137204604 137204994 -45210248 + L2 LINE L2 2652 3063 -250 31150 33 5 1 chr6 137204995 137209542 -45205700 + L1PA3 LINE L1 1589 6154 -1 398 349 76 16 chr6 137209564 137209813 -45205429 + L2 LINE L2 3050 3313 0 24 53 0 0 chr6 137210274 137210312 -45204930 + AT_rich Low_complexity Low_complexity 1 38 0 2335 80 0 13 chr6 137210776 137211087 -45204155 + AluY SINE Alu 1 307 -4 185 108 27 0 chr6 137211612 137211649 -45203593 + (CA)n Simple_repeat Simple_repeat 2 39 0 342 172 0 0 chr6 137214559 137214617 -45200625 - THE1C LTR MaLR 0 428 371 * 1291 159 55 19 chr6 137214605 137214862 -45200380 - THE1C LTR MaLR -109 266 1 1653 179 7 14 chr6 137215183 137215480 -45199762 + AluJo SINE Alu 1 295 -17 201 322 116 8 chr6 137215704 137215825 -45199417 - L2 LINE L2 -921 2393 2260 252 213 0 0 chr6 137215830 137215891 -45199351 + (CATA)n Simple_repeat Simple_repeat 2 62 0 369 298 87 48 chr6 137215976 137216228 -45199014 + L1MD2 LINE L1 4961 5222 -924 291 299 143 38 chr6 137216253 137216876 -45198366 + L1MD2 LINE L1 5258 5849 -317 23 0 0 0 chr6 137217032 137217055 -45198187 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr6 137217085 137217117 -45198125 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr6 137217654 137217677 -45197565 + AT_rich Low_complexity Low_complexity 1 23 0 628 124 0 0 chr6 137220345 137220434 -45194808 - FLAM_A SINE Alu -19 123 35 581 109 22 0 chr6 137220527 137220619 -45194623 - MER39 LTR ERV1 -18 689 596 269 287 83 0 chr6 137221323 137221431 -45193811 + MIR SINE MIR 101 217 -45 704 263 60 32 chr6 137221697 137221914 -45193328 - MER58A DNA MER1_type -1 223 1 327 270 67 0 chr6 137222671 137222760 -45192482 - MIR SINE MIR -161 101 7 198 0 0 0 chr6 137223512 137223534 -45191708 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1285 153 48 26 chr6 137223925 137224153 -45191089 + AluJb SINE Alu 55 287 -25 26 0 0 0 chr6 137224153 137224179 -45191063 + AT_rich Low_complexity Low_complexity 1 26 0 1522 164 14 11 chr6 137225250 137225525 -45189717 + AluJo SINE Alu 1 276 -36 204 40 0 0 chr6 137225888 137225913 -45189329 + (CA)n Simple_repeat Simple_repeat 1 25 0 180 77 0 0 chr6 137225913 137225939 -45189303 + (TG)n Simple_repeat Simple_repeat 2 27 0 251 196 22 0 chr6 137228191 137228237 -45187005 - L1ME LINE L1 -5998 72 26 459 267 7 59 chr6 137229109 137229141 -45186101 - L2 LINE L2 -4 3309 3277 2148 129 19 40 chr6 137229141 137229513 -45185729 + THE1B LTR MaLR 1 364 0 10696 114 12 10 chr6 137229513 137231090 -45184152 + THE1B-int LTR MaLR 1 1580 0 2138 128 22 30 chr6 137231090 137231457 -45183785 + THE1B LTR MaLR 1 364 0 459 267 7 59 chr6 137231457 137231557 -45183685 - L2 LINE L2 -33 3280 3182 423 0 0 0 chr6 137231559 137231606 -45183636 + (TAA)n Simple_repeat Simple_repeat 3 49 0 2261 262 143 10 chr6 137231638 137232497 -45182745 - L2 LINE L2 -297 3016 2045 407 311 112 6 chr6 137233099 137233260 -45181982 - MER5B DNA MER1_type 0 178 1 309 75 0 0 chr6 137233771 137233811 -45181431 + MER30 DNA MER1_type 1 40 -190 * 450 176 0 0 chr6 137233810 137233878 -45181364 + MER30 DNA MER1_type 163 230 0 25 0 0 0 chr6 137234072 137234097 -45181145 + AT_rich Low_complexity Low_complexity 1 25 0 64 26 0 0 chr6 137234368 137234446 -45180796 + AT_rich Low_complexity Low_complexity 1 78 0 492 214 55 66 chr6 137236012 137236311 -45178931 + LTR37B LTR ERV1 90 390 -78 1116 112 168 0 chr6 137236587 137236784 -45178458 + MER30 DNA MER1_type 1 230 0 575 282 117 44 chr6 137236933 137237231 -45178011 + MLT1L LTR MaLR 283 602 -13 340 351 73 12 chr6 137237360 137237525 -45177717 + MIR SINE MIR 45 219 -43 24 32 0 0 chr6 137238052 137238083 -45177159 + AT_rich Low_complexity Low_complexity 1 31 0 186 71 0 0 chr6 137238114 137238142 -45177100 + (T)n Simple_repeat Simple_repeat 1 28 0 204 40 0 0 chr6 137238144 137238169 -45177073 + (TG)n Simple_repeat Simple_repeat 2 26 0 229 327 89 0 chr6 137239484 137239585 -45175657 + MIR SINE MIR 151 260 -2 42 20 0 0 chr6 137240017 137240066 -45175176 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr6 137240707 137240729 -45174513 + AT_rich Low_complexity Low_complexity 1 22 0 983 121 0 0 chr6 137240835 137240976 -45174266 + AluSg/x SINE Alu 164 304 -8 475 316 69 17 chr6 137241166 137241428 -45173814 + L2 LINE L2 2768 3040 -232 723 259 47 0 chr6 137241488 137241720 -45173522 - Tigger6 DNA MER2_type 0 1597 1355 3758 211 70 27 chr6 137241729 137242769 -45172473 + L1MD2 LINE L1 5272 6356 -3 519 252 22 7 chr6 137242769 137242908 -45172334 - Tigger6 DNA MER2_type -274 1323 1183 2211 96 10 0 chr6 137242932 137243233 -45172009 - AluSg SINE Alu -6 304 1 320 315 74 6 chr6 137244680 137244842 -45170400 - Charlie8 DNA MER1_type -2212 205 33 413 239 8 39 chr6 137245403 137245533 -45169709 - MER94 DNA DNA -5 129 4 948 178 0 6 chr6 137248968 137249131 -45166111 - AluJb SINE Alu -15 297 136 212 341 110 10 chr6 137250459 137250574 -45164668 + MIR SINE MIR 40 163 -72 24 32 0 0 chr6 137250697 137250728 -45164514 + AT_rich Low_complexity Low_complexity 1 31 0 313 286 36 45 chr6 137252049 137252161 -45163081 - MIR3 SINE MIR -24 184 74 184 293 135 30 chr6 137253231 137253364 -45161878 - MER5B DNA MER1_type 0 178 32 362 258 119 20 chr6 137253656 137253807 -45161435 - L2 LINE L2 -3 3310 3145 213 356 96 7 chr6 137254235 137254381 -45160861 + MIR SINE MIR 92 250 -12 187 333 16 16 chr6 137255656 137255719 -45159523 - L2 LINE L2 -13 3300 3238 1596 208 67 20 chr6 137258422 137258778 -45156464 + MSTA LTR MaLR 1 373 -55 389 127 14 28 chr6 137258921 137258992 -45156250 + MSTA LTR MaLR 357 426 0 1302 175 70 64 chr6 137259201 137259544 -45155698 + MER7A DNA MER2_type 2 344 -2 2115 110 0 0 chr6 137261224 137261543 -45153699 - AluSq SINE Alu 0 322 4 418 340 67 43 chr6 137263948 137264369 -45150873 - L2 LINE L2 -1048 2266 1836 186 43 0 0 chr6 137264452 137264475 -45150767 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2163 110 3 0 chr6 137265307 137265606 -45149636 - AluSg SINE Alu -10 300 1 2123 233 102 48 chr6 137266046 137266794 -45148448 - L1ME3A LINE L1 0 6170 5383 287 259 105 62 chr6 137268203 137268369 -45146873 + MIR SINE MIR 13 184 -52 203 368 11 11 chr6 137268584 137268679 -45146563 - L2 LINE L2 -221 3051 2957 345 354 99 36 chr6 137269122 137269515 -45145727 + L2 LINE L2 2895 3312 -1 238 260 57 57 chr6 137269592 137269715 -45145527 + LTR67 LTR ERVL 427 549 -8 186 118 0 0 chr6 137270104 137270138 -45145104 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1245 65 6 18 chr6 137271807 137271976 -45143266 - AluSg/x SINE Alu -1 309 143 32 26 0 0 chr6 137272718 137272757 -45142485 + AT_rich Low_complexity Low_complexity 1 39 0 361 208 125 21 chr6 137272876 137272972 -45142270 - MLT1L LTR MaLR -315 300 195 250 296 148 19 chr6 137274496 137274604 -45140638 + L2 LINE L2 3191 3312 -1 253 333 37 0 chr6 137275597 137275678 -45139564 - MIR SINE MIR -176 86 3 30 69 0 0 chr6 137276603 137276661 -45138581 + AT_rich Low_complexity Low_complexity 1 58 0 454 190 164 26 chr6 137277369 137277485 -45137757 - MIR SINE MIR -17 245 114 24 0 0 0 chr6 137277556 137277580 -45137662 + AT_rich Low_complexity Low_complexity 1 24 0 197 65 32 0 chr6 137278727 137278758 -45136484 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 184 267 0 67 chr6 137278980 137279040 -45136202 + MIR SINE MIR 76 131 -131 241 358 86 16 chr6 137279725 137279912 -45135330 - L3b LINE CR1 -75 1508 1309 1462 141 40 23 chr6 137280887 137281342 -45133900 - MER51A LTR ERV1 -9 625 1 22 35 0 0 chr6 137282811 137282840 -45132402 + AT_rich Low_complexity Low_complexity 1 29 0 3425 75 24 0 chr6 137285126 137285594 -45129648 + L1PA7 LINE L1 5673 6151 -3 450 291 45 71 chr6 137285600 137286022 -45129220 + L1ME4a LINE L1 5610 6020 -101 358 223 8 41 chr6 137286962 137287083 -45128159 - LTR41 LTR ERVL -7 766 650 805 227 6 6 chr6 137287418 137287594 -45127648 - LTR41 LTR ERVL -596 177 2 1566 229 80 19 chr6 137287911 137288396 -45126846 - Charlie1b DNA MER1_type -4 519 5 1493 182 113 85 chr6 137288615 137288658 -45126584 - MLT2B1 LTR ERVL 0 520 480 261 0 0 0 chr6 137288658 137288687 -45126555 + (CA)n Simple_repeat Simple_repeat 2 30 0 1493 182 113 85 chr6 137288687 137289149 -45126093 - MLT2B1 LTR ERVL -40 480 1 551 370 102 32 chr6 137289618 137290120 -45125122 + L2 LINE L2 2358 2894 -420 216 0 0 0 chr6 137290125 137290149 -45125093 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 303 202 202 19 chr6 137291643 137291747 -45123495 + MIR SINE MIR 70 192 -70 4286 130 56 28 chr6 137292680 137293608 -45121634 - Tigger1 DNA MER2_type -83 2335 1 180 222 93 19 chr6 137294353 137294407 -45120835 - MIR SINE MIR -121 141 84 510 323 114 46 chr6 137294576 137295399 -45119843 - L2 LINE L2 -95 3218 2349 394 330 75 5 chr6 137295586 137295786 -45119456 - LTR67 LTR ERVL -297 260 47 28 29 0 0 chr6 137295952 137295987 -45119255 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr6 137296138 137296169 -45119073 + AT_rich Low_complexity Low_complexity 1 31 0 2227 76 0 0 chr6 137298205 137298481 -45116761 + AluSx SINE Alu 1 276 -36 180 0 0 0 chr6 137298484 137298504 -45116738 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 254 317 85 0 chr6 137298668 137298750 -45116492 + L1MC/D LINE L1 5549 5637 -2171 1797 123 138 19 chr6 137299735 137300060 -45115182 + THE1B LTR MaLR 1 364 0 1923 160 0 7 chr6 137300986 137301292 -45113950 - AluJb SINE Alu -8 304 1 209 191 106 0 chr6 137302342 137302389 -45112853 - MIR SINE MIR -35 227 176 758 262 0 22 chr6 137302406 137302589 -45112653 - MIR SINE MIR -56 206 28 264 393 9 0 chr6 137303509 137303616 -45111626 - L3 LINE CR1 -20 1557 1450 27 29 0 0 chr6 137304907 137304941 -45110301 + AT_rich Low_complexity Low_complexity 1 34 0 311 327 137 13 chr6 137304997 137305150 -45110092 - MIR SINE MIR -71 191 20 21 0 0 0 chr6 137305604 137305625 -45109617 + AT_rich Low_complexity Low_complexity 1 21 0 2404 58 0 23 chr6 137306459 137306768 -45108474 + AluY SINE Alu 1 302 -9 254 258 26 7 chr6 137307021 137307172 -45108070 + (TA)n Simple_repeat Simple_repeat 1 154 0 1943 149 3 40 chr6 137308415 137308765 -45106477 + MER1B DNA MER1_type 1 337 0 2441 42 19 19 chr6 137309430 137309741 -45105501 + AluY SINE Alu 1 311 0 256 419 26 19 chr6 137310530 137310685 -45104557 - L2 LINE L2 -5 3267 3112 252 0 0 0 chr6 137312776 137312804 -45102438 + (A)n Simple_repeat Simple_repeat 1 28 0 2030 134 3 0 chr6 137313648 137313946 -45101296 + AluSg SINE Alu 1 299 -11 1687 153 3 44 chr6 137314038 137314332 -45100910 + AluJo SINE Alu 1 282 -30 259 221 29 0 chr6 137314903 137314971 -45100271 - HsTC2 DNA Tc2 -1816 82 13 196 51 26 51 chr6 137315024 137315049 -45100193 + (TTTCC)n Simple_repeat Simple_repeat 2 27 -12 2179 73 3 44 chr6 137315049 137315179 -45100063 - L1PB1 LINE L1 0 6151 6017 2275 91 0 3 chr6 137315179 137315476 -45099766 - AluSc SINE Alu -13 296 1 2179 73 3 44 chr6 137315476 137315662 -45099580 - L1PB1 LINE L1 -134 6017 5848 196 51 26 51 chr6 137315662 137315675 -45099567 + (TTTCC)n Simple_repeat Simple_repeat 27 39 0 436 224 116 7 chr6 137316015 137316162 -45099080 + MER103 DNA DNA 2 164 -2 751 276 73 0 chr6 137317228 137317460 -45097782 - MIR SINE MIR 0 262 14 2228 90 0 7 chr6 137317910 137318210 -45097032 + AluSc SINE Alu 1 298 -11 191 286 191 29 chr6 137318481 137318586 -45096656 - L2 LINE L2 0 3313 3192 199 276 138 35 chr6 137318618 137318734 -45096508 - L2 LINE L2 -250 3063 2936 2096 172 6 3 chr6 137318818 137319178 -45096064 + MER47A DNA MER2_type 6 366 0 386 268 87 7 chr6 137319207 137319345 -45095897 + MIR3 SINE MIR 58 206 -2 182 296 70 14 chr6 137320372 137320443 -45094799 + MIR SINE MIR 118 192 -70 190 394 75 21 chr6 137320544 137320638 -45094604 - L2 LINE L2 -5 3267 3169 2235 118 3 0 chr6 137321032 137321337 -45093905 - AluSx SINE Alu -6 306 1 312 78 62 16 chr6 137322069 137322133 -45093109 + GA-rich Low_complexity Low_complexity 3 69 0 264 30 0 0 chr6 137322840 137322873 -45092369 + (CA)n Simple_repeat Simple_repeat 1 33 0 233 118 44 59 chr6 137322892 137322960 -45092282 + T-rich Low_complexity Low_complexity 4 70 0 2683 129 27 23 chr6 137323085 137323566 -45091676 - L1MA4A LINE L1 -6 6297 5815 1726 173 0 26 chr6 137323587 137323916 -45091326 - AluJb SINE Alu 0 312 1 268 313 157 30 chr6 137324575 137324741 -45090501 + MIR SINE MIR 71 257 -5 1089 199 42 19 chr6 137324846 137325062 -45090180 + AluJo SINE Alu 1 221 -91 351 0 0 0 chr6 137325062 137325101 -45090141 + (CAGG)n Simple_repeat Simple_repeat 4 42 0 846 126 0 0 chr6 137325102 137325269 -45089973 + (GGAA)n Simple_repeat Simple_repeat 4 170 0 21 0 0 0 chr6 137325530 137325551 -45089691 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 137326090 137326118 -45089124 + AT_rich Low_complexity Low_complexity 1 28 0 272 201 213 0 chr6 137326743 137326840 -45088402 - MIR SINE MIR -49 159 43 1273 169 18 79 chr6 137326863 137327122 -45088120 + L1MB1 LINE L1 5913 6155 -34 808 215 157 89 chr6 137327122 137327639 -45087603 + MER41C LTR ERV1 3 554 0 1273 169 18 79 chr6 137327639 137327658 -45087584 + L1MB1 LINE L1 6155 6174 -15 1147 194 8 21 chr6 137327996 137328238 -45087004 + MER8 DNA MER2_type 1 239 0 24 0 0 0 chr6 137329467 137329491 -45085751 + AT_rich Low_complexity Low_complexity 1 24 0 1081 218 21 17 chr6 137330069 137330303 -45084939 - MER8 DNA MER2_type -4 235 1 23 33 0 0 chr6 137330550 137330580 -45084662 + AT_rich Low_complexity Low_complexity 1 30 0 1056 284 89 43 chr6 137330739 137331321 -45083921 - L1MC4a LINE L1 -1871 5937 5329 300 335 7 19 chr6 137333402 137333557 -45081685 + GA-rich Low_complexity Low_complexity 1 153 0 2212 117 0 0 chr6 137333950 137334250 -45080992 - AluSg SINE Alu -10 300 1 1789 160 62 56 chr6 137334251 137334700 -45080542 + MER31B LTR ERV1 15 466 0 604 119 101 9 chr6 137335182 137335291 -45079951 + FLAM_C SINE Alu 1 119 -24 280 56 56 47 chr6 137335296 137335403 -45079839 + (TA)n Simple_repeat Simple_repeat 1 108 0 281 180 33 0 chr6 137335474 137335535 -45079707 - HAL1 LINE L1 -166 2341 2279 340 121 0 17 chr6 137335535 137335593 -45079649 - MSTA LTR MaLR 0 428 372 209 179 0 18 chr6 137335598 137335654 -45079588 + (TA)n Simple_repeat Simple_repeat 1 55 0 256 312 37 37 chr6 137337082 137337191 -45078051 + L2 LINE L2 3192 3300 -13 622 282 10 20 chr6 137337419 137337621 -45077621 - MIR SINE MIR 0 262 63 2287 96 3 0 chr6 137337728 137338021 -45077221 - AluSg SINE Alu -16 294 1 213 266 47 0 chr6 137338606 137338670 -45076572 + L2 LINE L2 3231 3297 -16 2251 92 10 16 chr6 137338954 137339259 -45075983 - AluSg SINE Alu -7 303 1 1746 153 6 69 chr6 137339913 137340246 -45074996 + AluSx SINE Alu 1 312 0 4667 204 95 28 chr6 137340630 137341958 -45073284 + Charlie1a DNA MER1_type 39 1455 0 379 322 33 41 chr6 137343376 137343621 -45071621 + MIR SINE MIR 20 262 0 364 220 65 65 chr6 137343923 137344091 -45071151 + L1MC5 LINE L1 6990 7157 -804 1321 144 23 0 chr6 137344202 137344417 -45070825 + MLT1A1 LTR MaLR 146 365 0 769 174 67 0 chr6 137344594 137344743 -45070499 - L1MB7 LINE L1 -18 6166 6008 689 229 175 0 chr6 137344743 137344966 -45070276 - L1MEc LINE L1 -4536 1860 1599 21 0 0 0 chr6 137345113 137345134 -45070108 + AT_rich Low_complexity Low_complexity 1 21 0 226 330 89 18 chr6 137345658 137345770 -45069472 + MIR SINE MIR 29 148 -114 198 197 316 26 chr6 137346306 137346382 -45068860 - L2 LINE L2 -9 3263 3166 600 211 40 7 chr6 137348701 137348853 -45066389 + L1MA9 LINE L1 6152 6308 -4 251 306 59 0 chr6 137349211 137349296 -45065946 + MIR3 SINE MIR 111 200 -8 2577 119 44 2 chr6 137349863 137350274 -45064968 - MSTA LTR MaLR 0 428 1 1796 167 10 10 chr6 137350361 137350661 -45064581 + AluJo SINE Alu 1 300 -12 21 0 0 0 chr6 137351048 137351069 -45064173 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr6 137351331 137351358 -45063884 + (TG)n Simple_repeat Simple_repeat 1 27 0 1195 207 136 6 chr6 137351693 137352031 -45063211 - L1MB7 LINE L1 -9 6175 5794 726 203 0 0 chr6 137352094 137352227 -45063015 - FLAM_A SINE Alu 0 133 1 706 218 92 8 chr6 137352345 137352606 -45062636 - MER33 DNA MER1_type 0 324 42 2233 88 0 11 chr6 137352725 137353056 -45062186 - AluSq SINE Alu 0 330 3 2282 102 3 13 chr6 137353841 137354154 -45061088 - AluSq SINE Alu -3 310 1 591 53 0 0 chr6 137354700 137354775 -45060467 + (TA)n Simple_repeat Simple_repeat 2 76 0 791 229 151 0 chr6 137355676 137355881 -45059361 - MER45C DNA AcHobo 0 953 718 1092 234 17 4 chr6 137355947 137356178 -45059064 - MER45C DNA AcHobo -711 242 9 25 0 0 0 chr6 137356714 137356739 -45058503 + AT_rich Low_complexity Low_complexity 1 25 0 1354 165 102 15 chr6 137357116 137357382 -45057860 - AluJb SINE Alu -23 289 1 510 304 84 8 chr6 137357596 137357833 -45057409 + L2 LINE L2 1871 2125 -1189 219 305 0 0 chr6 137358080 137358139 -45057103 + L2 LINE L2 2262 2320 -994 * 319 279 57 86 chr6 137358116 137358256 -45056986 + L2 LINE L2 3178 3313 0 279 0 0 0 chr6 137358531 137358562 -45056680 + (CAATA)n Simple_repeat Simple_repeat 5 35 0 1815 173 107 28 chr6 137359711 137360179 -45055063 + MLT1D LTR MaLR 1 505 0 189 0 0 0 chr6 137360849 137360870 -45054372 + (T)n Simple_repeat Simple_repeat 1 21 0 198 0 0 0 chr6 137361704 137361726 -45053516 + (A)n Simple_repeat Simple_repeat 1 22 0 223 339 0 0 chr6 137362089 137362151 -45053091 + polypurine Low_complexity Low_complexity 4 65 0 786 230 12 75 chr6 137362552 137362890 -45052352 - L1MC5 LINE L1 0 8042 7740 555 290 51 18 chr6 137362890 137363107 -45052135 + MER58A DNA MER1_type 1 224 0 1688 222 74 53 chr6 137363107 137363688 -45051554 - L1MC4 LINE L1 -295 7747 7155 364 275 106 7 chr6 137364253 137364277 -45050965 + L3 LINE CR1 1136 1156 -421 252 0 0 0 chr6 137364277 137364305 -45050937 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 364 275 106 7 chr6 137364305 137364422 -45050820 + L3 LINE CR1 1156 1291 -286 776 275 63 0 chr6 137365177 137365399 -45049843 + MIR SINE MIR 6 241 -21 535 180 47 8 chr6 137366357 137366485 -45048757 + L1MA9 LINE L1 6152 6284 -28 529 251 104 18 chr6 137370728 137370891 -45044351 - MIR3 SINE MIR -31 177 1 26 0 0 0 chr6 137371800 137371826 -45043416 + AT_rich Low_complexity Low_complexity 1 26 0 31 26 0 0 chr6 137373512 137373550 -45041692 + AT_rich Low_complexity Low_complexity 1 38 0 1396 170 106 3 chr6 137376621 137376903 -45038339 + AluJb SINE Alu 1 311 -1 368 143 14 0 chr6 137376903 137376973 -45038269 + GA-rich Low_complexity Low_complexity 1 71 0 2212 168 215 7 chr6 137377401 137377983 -45037259 + MER39 LTR ERV1 1 703 -4 1840 182 47 32 chr6 137378013 137378558 -45036684 - MLT2A2 LTR ERVL 0 554 1 247 284 68 0 chr6 137378559 137378633 -45036609 - MLT1K LTR MaLR -508 80 2 25 0 0 0 chr6 137379170 137379195 -45036047 + AT_rich Low_complexity Low_complexity 1 25 0 789 278 59 43 chr6 137380647 137380793 -45034449 + MIR SINE MIR 2 155 -107 1711 181 67 16 chr6 137380793 137381164 -45034078 - MLT1B LTR MaLR 0 390 1 789 278 59 43 chr6 137381164 137381272 -45033970 + MIR SINE MIR 155 260 -2 226 312 59 63 chr6 137382217 137382438 -45032804 + L2 LINE L2 2876 3095 -177 225 343 81 8 chr6 137382561 137382743 -45032499 + MIR SINE MIR 2 228 -34 334 264 189 0 chr6 137383103 137383209 -45032033 + L2 LINE L2 3188 3313 0 2455 61 3 0 chr6 137383380 137383675 -45031567 + AluY SINE Alu 1 296 -15 495 0 0 0 chr6 137383691 137383746 -45031496 + (CA)n Simple_repeat Simple_repeat 2 56 0 209 299 52 21 chr6 137383779 137383876 -45031366 - MIR3 SINE MIR -23 185 86 240 387 20 20 chr6 137383915 137384065 -45031177 + L2 LINE L2 3025 3174 -98 971 172 6 0 chr6 137384160 137384323 -45030919 + FAM SINE Alu 1 45 -4 23 0 0 0 chr6 137385041 137385064 -45030178 + AT_rich Low_complexity Low_complexity 1 23 0 725 169 0 0 chr6 137387428 137387546 -45027696 + FLAM_A SINE Alu 1 118 -15 189 74 0 0 chr6 137388138 137388165 -45027077 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 23 54 0 0 chr6 137388760 137388797 -45026445 + AT_rich Low_complexity Low_complexity 1 37 0 697 182 18 136 chr6 137389755 137390035 -45025207 + MER112 DNA MER1_type 2 248 -12 559 147 69 10 chr6 137390914 137391016 -45024226 - AluSg/x SINE Alu -44 268 161 1749 146 8 4 chr6 137391016 137391276 -45023966 - AluSx SINE Alu -51 261 1 243 0 0 0 chr6 137391491 137391518 -45023724 + (CA)n Simple_repeat Simple_repeat 1 27 0 2098 169 40 24 chr6 137392672 137393045 -45022197 - MER63B DNA MER1_type -627 435 53 2210 101 3 3 chr6 137393045 137393342 -45021900 + AluSg SINE Alu 1 297 -13 2098 169 40 24 chr6 137393342 137393388 -45021854 - MER63B DNA MER1_type -1009 53 9 191 328 62 31 chr6 137393554 137393682 -45021560 + L2 LINE L2 3168 3299 -14 968 196 74 5 chr6 137393781 137393942 -45021300 - AluJo SINE Alu -20 292 115 387 0 0 0 chr6 137393942 137393985 -45021257 + (TG)n Simple_repeat Simple_repeat 2 44 0 968 196 74 5 chr6 137393985 137394012 -45021230 - AluJo SINE Alu -197 115 91 1134 72 0 0 chr6 137395207 137395346 -45019896 - AluSc SINE Alu -15 294 156 1611 87 5 0 chr6 137395346 137395553 -45019689 + AluSp SINE Alu 88 295 -18 1278 155 0 19 chr6 137396569 137396782 -45018460 + AluJo SINE Alu 97 305 -7 471 296 152 13 chr6 137397036 137397266 -45017976 - MIR SINE MIR 0 262 1 219 281 94 21 chr6 137398345 137398441 -45016801 + L2 LINE L2 3170 3272 0 1459 199 0 33 chr6 137398671 137398762 -45016480 + Tigger7 DNA MER2_type 1 93 -2394 2189 102 6 13 chr6 137398762 137399077 -45016165 + AluSq SINE Alu 1 313 0 1459 199 0 33 chr6 137399077 137399261 -45015981 + Tigger7 DNA MER2_type 93 267 -2220 369 256 11 0 chr6 137399272 137399362 -45015880 + Tigger7 DNA MER2_type 2397 2487 0 232 370 58 26 chr6 137399745 137399899 -45015343 - MIR3 SINE MIR -27 181 23 217 240 0 0 chr6 137400698 137400748 -45014494 + (CATA)n Simple_repeat Simple_repeat 2 51 0 26 30 0 0 chr6 137400907 137400940 -45014302 + AT_rich Low_complexity Low_complexity 1 33 0 261 190 50 50 chr6 137401724 137401824 -45013418 + MLT1K LTR MaLR 471 570 -18 467 233 148 40 chr6 137401863 137402039 -45013203 + MIR SINE MIR 55 249 -13 26 30 0 0 chr6 137402345 137402378 -45012864 + AT_rich Low_complexity Low_complexity 1 33 0 2051 148 7 0 chr6 137403302 137403612 -45011630 + AluSx SINE Alu 1 312 0 463 260 173 13 chr6 137403763 137403913 -45011329 - MER5A DNA MER1_type 0 189 16 279 0 0 0 chr6 137404470 137404501 -45010741 + (TG)n Simple_repeat Simple_repeat 2 32 0 267 133 0 0 chr6 137405769 137405814 -45009428 + (CA)n Simple_repeat Simple_repeat 2 46 0 186 384 27 0 chr6 137406830 137406903 -45008339 + L3 LINE CR1 1018 1092 -485 300 137 0 0 chr6 137407169 137407220 -45008022 + (CA)n Simple_repeat Simple_repeat 2 52 0 304 172 35 69 chr6 137407347 137407434 -45007808 - MIR SINE MIR -60 202 119 28 29 0 0 chr6 137410824 137410859 -45004383 + GC_rich Low_complexity Low_complexity 1 35 0 209 179 0 18 chr6 137411948 137412004 -45003238 + (CATA)n Simple_repeat Simple_repeat 2 56 0 369 246 54 54 chr6 137412637 137412767 -45002475 - MIR SINE MIR -71 191 62 319 304 105 23 chr6 137413160 137413331 -45001911 + L1ME4a LINE L1 5711 5895 -226 835 182 0 0 chr6 137413331 137413490 -45001752 + L1MB3 LINE L1 6025 6183 0 372 123 0 0 chr6 137414117 137414190 -45001052 + (TA)n Simple_repeat Simple_repeat 1 73 0 2433 87 0 0 chr6 137414237 137414535 -45000707 + AluSc SINE Alu 1 298 -11 393 328 20 53 chr6 137414718 137414962 -45000280 - MIR SINE MIR 0 262 27 303 246 14 0 chr6 137416738 137416807 -44998435 + L1MC4 LINE L1 6634 6703 -1339 2265 213 12 41 chr6 137417582 137418099 -44997143 + MLT1D LTR MaLR 2 503 -2 473 265 238 0 chr6 137418099 137418250 -44996992 - MIR SINE MIR -58 204 18 209 271 82 35 chr6 137418786 137418871 -44996371 + L2 LINE L2 3184 3272 0 1328 187 71 15 chr6 137419329 137419450 -44995792 + AluJb SINE Alu 1 114 -198 279 0 0 0 chr6 137419450 137419481 -44995761 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1328 187 71 15 chr6 137419481 137419626 -44995616 + AluJb SINE Alu 114 282 -30 224 26 0 79 chr6 137419629 137419667 -44995575 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 551 252 33 40 chr6 137419958 137420109 -44995133 - L2 LINE L2 -1 3312 3163 197 383 52 0 chr6 137420160 137420275 -44994967 + L3 LINE CR1 1255 1375 -202 2320 40 0 40 chr6 137420310 137420611 -44994631 + AluY SINE Alu 1 289 -22 216 220 0 17 chr6 137420806 137420865 -44994377 + T-rich Low_complexity Low_complexity 2 59 0 2207 89 3 7 chr6 137420929 137421221 -44994021 - AluSg SINE Alu -19 291 1 192 387 84 0 chr6 137423713 137423832 -44991410 + MIR3 SINE MIR 59 187 -21 294 192 192 17 chr6 137423985 137424105 -44991137 - L1ME4a LINE L1 -3 6118 5978 585 330 41 5 chr6 137424413 137424631 -44990611 - MIR SINE MIR -30 232 7 187 259 0 52 chr6 137425068 137425126 -44990116 + MIR SINE MIR 114 168 -94 2934 224 96 78 chr6 137425645 137425864 -44989378 + MER69B DNA AcHobo 60 273 -2253 988 187 9 36 chr6 137425864 137426089 -44989153 + MER20 DNA MER1_type 1 219 0 2934 224 96 78 chr6 137426089 137427014 -44988228 + MER69B DNA AcHobo 273 1225 -1 2381 83 3 3 chr6 137428658 137428960 -44986282 - AluSp SINE Alu -11 302 1 1678 123 4 4 chr6 137429232 137429468 -44985774 - AluSx SINE Alu -74 238 3 25 0 0 0 chr6 137429504 137429529 -44985713 + AT_rich Low_complexity Low_complexity 1 25 0 622 265 0 0 chr6 137430112 137430244 -44984998 + FLAM_A SINE Alu 2 133 0 377 248 81 7 chr6 137430502 137430757 -44984485 + MER46C DNA MER2_type 2 338 0 858 179 0 4 chr6 137431370 137431637 -44983605 + CT-rich Low_complexity Low_complexity 1 265 0 2807 241 35 33 chr6 137431954 137432779 -44982463 - L1ME1 LINE L1 -28 6138 5312 * 2915 168 111 121 chr6 137432775 137433358 -44981884 - L1MC3 LINE L1 -3 7782 7121 254 308 33 0 chr6 137433358 137433449 -44981793 - MLT1F1 LTR MaLR -437 130 37 2915 168 111 121 chr6 137433449 137433761 -44981481 - L1MC3 LINE L1 -664 7121 6807 4406 231 86 57 chr6 137433815 137434184 -44981058 - L1ME1 LINE L1 -874 5272 4915 1975 151 6 20 chr6 137434184 137434528 -44980714 + MER44D DNA MER2_type 1 609 0 4406 231 86 57 chr6 137434528 137435478 -44979764 - L1ME1 LINE L1 -1231 4915 3993 686 209 0 0 chr6 137435478 137435593 -44979649 - FLAM_A SINE Alu -17 116 2 4406 231 86 57 chr6 137435593 137435909 -44979333 - L1ME1 LINE L1 -2153 3993 3580 1111 87 7 0 chr6 137435909 137436058 -44979184 - L1PA11 LINE L1 -1 6173 6024 4406 231 86 57 chr6 137436058 137436180 -44979062 - L1ME1 LINE L1 -2566 3580 3463 3644 219 66 6 chr6 137436185 137437873 -44977369 + L1MD1 LINE L1 1630 3417 -3123 1989 158 12 9 chr6 137437881 137438216 -44977026 - MER2 DNA MER2_type 0 345 10 381 206 19 96 chr6 137438226 137438435 -44976807 + L1MD1 LINE L1 3419 3611 -2929 2198 233 150 26 chr6 137438447 137438755 -44976487 + L1MD1 LINE L1 4254 4523 -2017 2007 80 80 4 chr6 137438755 137439030 -44976212 + AluY SINE Alu 1 296 -15 2198 233 150 26 chr6 137439030 137439669 -44975573 + L1MD1 LINE L1 4523 5318 -1222 2422 194 28 95 chr6 137439675 137440392 -44974850 + L1MD1 LINE L1 5966 6634 -2 376 299 75 7 chr6 137440930 137441077 -44974165 + MIR SINE MIR 19 175 -87 328 347 59 29 chr6 137441191 137441430 -44973812 + L1ME LINE L1 5318 5563 -558 286 291 77 0 chr6 137441902 137442019 -44973223 - HAL1 LINE L1 -2366 141 16 21 57 0 0 chr6 137442062 137442097 -44973145 + AT_rich Low_complexity Low_complexity 1 35 0 794 242 28 0 chr6 137442468 137442747 -44972495 + AluJo SINE Alu 123 406 0 326 127 0 16 chr6 137443255 137443318 -44971924 + (GA)n Simple_repeat Simple_repeat 2 63 0 21 57 0 0 chr6 137443442 137443477 -44971765 + AT_rich Low_complexity Low_complexity 1 35 0 274 263 38 0 chr6 137444119 137444199 -44971043 + CT-rich Low_complexity Low_complexity 2 84 0 22 56 0 0 chr6 137444949 137444985 -44970257 + AT_rich Low_complexity Low_complexity 1 36 0 1756 219 38 7 chr6 137445226 137445677 -44969565 + MLT1C LTR MaLR 1 465 -2 2043 152 133 0 chr6 137445964 137446340 -44968902 + MSTB LTR MaLR 1 426 0 575 53 13 0 chr6 137446588 137446664 -44968578 + MADE1 DNA Mariner 3 79 -1 242 54 0 27 chr6 137447258 137447295 -44967947 + (TG)n Simple_repeat Simple_repeat 1 36 0 1932 136 19 23 chr6 137447936 137448245 -44966997 - AluJb SINE Alu 0 312 5 851 188 6 6 chr6 137449514 137449679 -44965563 - FRAM SINE Alu -1 165 1 546 292 65 18 chr6 137450566 137450734 -44964508 + MER20B DNA MER1_type 111 286 -497 234 105 0 0 chr6 137450961 137450999 -44964243 + (TG)n Simple_repeat Simple_repeat 1 38 0 501 285 14 14 chr6 137451281 137451425 -44963817 - MER5B DNA MER1_type -1 177 47 686 276 6 6 chr6 137451664 137451838 -44963404 - MER5B DNA MER1_type -1 177 4 352 327 40 20 chr6 137452061 137452263 -44962979 + HAL1 LINE L1 1473 1678 -829 314 306 78 28 chr6 137452539 137452719 -44962523 + L1MDa LINE L1 2118 2306 -3909 2374 255 48 28 chr6 137452727 137453481 -44961761 + L1MDa LINE L1 36 804 -5592 803 95 0 0 chr6 137453482 137453587 -44961655 + AluY SINE Alu 193 297 -14 1328 262 59 35 chr6 137453604 137454120 -44961122 + L1MDa LINE L1 866 1409 -4987 2421 90 3 0 chr6 137454120 137454431 -44960811 + AluSx SINE Alu 1 312 0 1328 262 59 35 chr6 137454431 137454688 -44960554 + L1MDa LINE L1 1409 1658 -4738 545 284 63 11 chr6 137454690 137454958 -44960284 + L1MDa LINE L1 1762 2043 -4353 554 300 138 35 chr6 137455009 137455473 -44959769 + L1MDa LINE L1 2385 2896 -3319 276 269 129 0 chr6 137455479 137455572 -44959670 + MER20B DNA MER1_type 315 419 -364 362 282 0 0 chr6 137455594 137455679 -44959563 - MER96 DNA MER1_type? 0 175 91 255 254 0 0 chr6 137455732 137455791 -44959451 + MER20B DNA MER1_type 438 496 -287 1801 197 31 83 chr6 137456462 137456979 -44958263 - MLT1D LTR MaLR -9 496 7 424 267 43 92 chr6 137457107 137457388 -44957854 + MER20B DNA MER1_type 515 781 -2 23 54 0 0 chr6 137457710 137457747 -44957495 + AT_rich Low_complexity Low_complexity 1 37 0 2163 125 0 10 chr6 137457928 137458231 -44957011 + AluSx SINE Alu 1 300 -12 2275 77 14 0 chr6 137458245 137458542 -44956700 - AluY SINE Alu -10 301 1 260 343 35 58 chr6 137459136 137459261 -44955981 - MIR SINE MIR -65 197 76 1955 149 39 36 chr6 137459261 137459624 -44955618 + THE1B LTR MaLR 1 364 0 260 343 35 58 chr6 137459624 137459670 -44955572 - MIR SINE MIR -186 76 30 586 306 83 39 chr6 137459676 137460039 -44955203 - L2 LINE L2 -1 3312 2934 267 257 0 0 chr6 137461352 137461453 -44953789 + CT-rich Low_complexity Low_complexity 1 101 0 1746 180 0 34 chr6 137461891 137462214 -44953028 + AluJo SINE Alu 1 312 0 540 275 17 0 chr6 137462749 137462869 -44952373 - L2 LINE L2 -2 3311 3190 280 138 31 15 chr6 137462928 137462993 -44952249 + CT-rich Low_complexity Low_complexity 2 67 0 2301 106 6 0 chr6 137462995 137463306 -44951936 - AluSq SINE Alu 0 313 1 258 309 22 88 chr6 137463407 137463543 -44951699 - MIR SINE MIR -70 192 66 29 0 0 0 chr6 137463600 137463629 -44951613 + AT_rich Low_complexity Low_complexity 1 29 0 31 68 0 0 chr6 137463834 137463893 -44951349 + AT_rich Low_complexity Low_complexity 1 59 0 487 285 108 28 chr6 137464897 137465111 -44950131 - MIR SINE MIR -12 250 20 1983 158 0 3 chr6 137465493 137465791 -44949451 + AluSx SINE Alu 1 297 -15 263 266 184 24 chr6 137466196 137466403 -44948839 - MLT1K LTR MaLR -17 571 332 590 142 159 91 chr6 137466872 137467048 -44948194 + MER5A DNA MER1_type 2 189 0 180 0 0 0 chr6 137467867 137467887 -44947355 + (CA)n Simple_repeat Simple_repeat 1 20 0 390 91 0 0 chr6 137468991 137469046 -44946196 + (TG)n Simple_repeat Simple_repeat 2 56 0 1595 141 86 17 chr6 137469678 137469969 -44945273 - AluJb SINE Alu -1 311 1 204 185 0 0 chr6 137470096 137470150 -44945092 + T-rich Low_complexity Low_complexity 1 54 0 309 356 15 7 chr6 137471295 137471430 -44943812 + MIR3 SINE MIR 41 176 -32 33 56 0 0 chr6 137471470 137471524 -44943718 + AT_rich Low_complexity Low_complexity 1 54 0 249 33 0 0 chr6 137472055 137472085 -44943157 + (TA)n Simple_repeat Simple_repeat 2 31 0 698 110 0 0 chr6 137474489 137474589 -44940653 + HY3 scRNA scRNA 1 100 -1 33 0 0 0 chr6 137474695 137474728 -44940514 + AT_rich Low_complexity Low_complexity 1 33 0 2269 96 0 3 chr6 137474731 137475022 -44940220 - AluSq SINE Alu -23 290 1 715 256 28 103 chr6 137475096 137475787 -44939455 + L1MEc LINE L1 1921 2519 -3696 21089 159 17 11 chr6 137475788 137483440 -44931802 + L1MA1 LINE L1 15 7712 -9 1351 243 65 33 chr6 137483459 137483978 -44931264 + L1MEc LINE L1 2511 3046 -3169 361 229 10 10 chr6 137484198 137484294 -44930948 + L1M4 LINE L1 2209 2304 -3842 1456 227 59 55 chr6 137484306 137484782 -44930460 + L1MC4 LINE L1 7422 7899 -143 599 299 71 0 chr6 137484875 137485099 -44930143 + HAL1 LINE L1 1492 1731 -776 27 29 0 0 chr6 137485270 137485304 -44929938 + AT_rich Low_complexity Low_complexity 1 34 0 180 320 48 54 chr6 137485669 137485816 -44929426 - L2 LINE L2 -1985 1329 1184 706 297 50 17 chr6 137489119 137489358 -44925884 + MIR SINE MIR 2 248 -14 280 242 0 0 chr6 137489737 137489799 -44925443 + (TG)n Simple_repeat Simple_repeat 2 63 0 195 282 64 26 chr6 137489823 137489901 -44925341 - L2 LINE L2 -75 3238 3158 666 274 7 7 chr6 137491557 137491757 -44923485 - MIR SINE MIR -55 207 9 314 304 34 0 chr6 137491790 137491938 -44923304 + CT-rich Low_complexity Low_complexity 2 154 0 1858 124 85 25 chr6 137492181 137492535 -44922707 + THE1C LTR MaLR 1 375 0 947 200 99 42 chr6 137492645 137492977 -44922265 + MLT1B LTR MaLR 1 365 0 625 204 15 0 chr6 137492986 137493123 -44922119 - L1ME3 LINE L1 -24 6138 6000 234 284 0 0 chr6 137494442 137494590 -44920652 + GA-rich Low_complexity Low_complexity 1 148 0 24 32 0 0 chr6 137495870 137495901 -44919341 + AT_rich Low_complexity Low_complexity 1 31 0 373 278 37 31 chr6 137495928 137496090 -44919152 - MLT1I LTR MaLR -4 405 243 524 276 19 6 chr6 137496127 137496283 -44918959 - MLT1I LTR MaLR -251 158 1 237 316 59 26 chr6 137496747 137496899 -44918343 - MLT1K LTR MaLR 0 588 432 298 258 30 83 chr6 137496938 137497032 -44918210 + MIR SINE MIR 112 199 -63 2046 115 14 3 chr6 137497032 137497320 -44917922 - AluSq SINE Alu -21 292 2 298 258 30 83 chr6 137497320 137497357 -44917885 + MIR SINE MIR 199 236 -26 2216 89 3 23 chr6 137497643 137497946 -44917296 - AluSc SINE Alu -10 299 3 792 220 14 38 chr6 137498578 137498787 -44916455 - AluJo SINE Alu -19 293 90 839 154 0 0 chr6 137498894 137499030 -44916212 - L1MB4 LINE L1 -215 6201 6066 719 170 0 37 chr6 137499033 137499168 -44916074 - FLAM_A SINE Alu -2 140 11 3541 186 31 37 chr6 137499168 137499477 -44915765 - L1MB4 LINE L1 -406 6013 5704 1951 113 3 18 chr6 137499477 137499761 -44915481 + AluSg SINE Alu 22 301 -9 3541 186 31 37 chr6 137499761 137500069 -44915173 - L1MB4 LINE L1 -715 5704 5396 631 168 61 0 chr6 137500069 137500200 -44915042 - L1MA9 LINE L1 -5 6307 6169 3541 186 31 37 chr6 137500200 137500973 -44914269 - L1MB4 LINE L1 -1023 5396 4633 239 348 76 0 chr6 137500974 137501066 -44914176 - L2 LINE L2 -15 3298 3200 1826 239 38 74 chr6 137502255 137502543 -44912699 - L1MB4 LINE L1 -2535 3847 3550 2079 145 0 0 chr6 137502543 137502840 -44912402 - AluSx SINE Alu -15 297 1 1826 239 38 74 chr6 137502840 137503300 -44911942 - L1MB4 LINE L1 -2832 3550 3135 464 224 0 28 chr6 137503300 137503407 -44911835 + U13 snRNA snRNA 1 104 0 1826 239 38 74 chr6 137503407 137503558 -44911684 - L1MB4 LINE L1 -3247 3135 2980 650 140 0 0 chr6 137503572 137503672 -44911570 - LTR12 LTR ERV1 0 714 615 262 293 10 0 chr6 137503674 137503773 -44911469 - LTR30 LTR ERV1 -79 643 544 1378 137 55 16 chr6 137503773 137504063 -44911179 - LTR12 LTR ERV1 -422 2016 48 246 213 0 0 chr6 137504063 137504110 -44911132 - LTR30 LTR ERV1 -675 47 1 12692 159 31 45 chr6 137504110 137504552 -44910690 - L1MB4 LINE L1 -3417 2965 2518 1947 134 9 37 chr6 137504552 137504873 -44910369 - AluSx SINE Alu 0 312 1 12692 159 31 45 chr6 137504873 137504899 -44910343 - L1MB4 LINE L1 -3864 2518 2493 2274 100 3 3 chr6 137504899 137505198 -44910044 - AluSq SINE Alu -14 299 1 12692 159 31 45 chr6 137505198 137506058 -44909184 - L1MB4 LINE L1 -3889 2493 1622 1614 195 10 27 chr6 137506058 137506356 -44908886 - AluJo SINE Alu -19 293 1 12692 159 31 45 chr6 137506356 137507421 -44907821 - L1MB4 LINE L1 -4760 1622 627 2741 126 12 2 chr6 137507421 137507849 -44907393 - MER57B LTR ERV1 0 434 3 12692 159 31 45 chr6 137507849 137508435 -44906807 - L1MB4 LINE L1 -5755 627 34 219 69 0 0 chr6 137508460 137508489 -44906753 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1646 163 63 0 chr6 137508491 137508761 -44906481 - AluJb SINE Alu -25 287 1 361 281 84 30 chr6 137510865 137511068 -44904174 + L1 LINE L1 2278 2491 -3655 209 220 20 0 chr6 137511190 137511240 -44904002 + (CATA)n Simple_repeat Simple_repeat 4 54 0 22 35 0 0 chr6 137511296 137511325 -44903917 + AT_rich Low_complexity Low_complexity 1 29 0 1654 99 68 4 chr6 137511416 137511679 -44903563 - L1PA11 LINE L1 0 6174 5895 1163 143 0 5 chr6 137511680 137511876 -44903366 + L1P LINE L1 4862 5056 -1090 2012 132 4 0 chr6 137512185 137512499 -44902743 + AluSx SINE Alu 1 315 0 22 0 0 0 chr6 137512509 137512531 -44902711 + AT_rich Low_complexity Low_complexity 1 22 0 577 195 18 0 chr6 137512533 137512646 -44902596 + AluSg/x SINE Alu 181 295 -14 554 283 79 58 chr6 137512665 137513082 -44902160 + L1ME LINE L1 5393 5818 -303 * 4995 181 12 18 chr6 137513076 137514164 -44901078 + L1 LINE L1 4193 5274 -872 1451 174 4 15 chr6 137514384 137514648 -44900594 + AluJb SINE Alu 38 298 -14 2043 108 22 0 chr6 137515014 137515291 -44899951 + AluSx SINE Alu 16 298 -14 286 214 0 43 chr6 137515439 137515509 -44899733 - MER5B DNA MER1_type -48 130 64 297 0 0 0 chr6 137515522 137515555 -44899687 + (GA)n Simple_repeat Simple_repeat 2 34 0 605 204 86 20 chr6 137515838 137515990 -44899252 - MER5B DNA MER1_type -13 165 4 247 125 0 69 chr6 137516060 137516132 -44899110 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 268 127 36 0 chr6 137516286 137516341 -44898901 + T-rich Low_complexity Low_complexity 4 60 0 234 342 60 0 chr6 137516455 137516572 -44898670 - MIR SINE MIR -87 175 52 2252 58 0 7 chr6 137516991 137517269 -44897973 - AluY SINE Alu -3 308 33 1650 141 4 0 chr6 137517408 137517697 -44897545 + AluSx SINE Alu 43 332 0 377 270 49 76 chr6 137517795 137517980 -44897262 + L2 LINE L2 3128 3307 -6 2185 121 0 10 chr6 137518207 137518520 -44896722 - AluSg SINE Alu 0 310 1 29 28 0 0 chr6 137518560 137518596 -44896646 + AT_rich Low_complexity Low_complexity 1 36 0 2453 72 0 3 chr6 137518932 137519238 -44896004 + AluY SINE Alu 1 305 -6 265 319 21 64 chr6 137521997 137522138 -44893104 + L2 LINE L2 3179 3313 0 225 0 0 0 chr6 137523500 137523525 -44891717 + (TG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr6 137523806 137523827 -44891415 + AT_rich Low_complexity Low_complexity 1 21 0 756 304 123 34 chr6 137524080 137524748 -44890494 - L2 LINE L2 -673 2641 1915 24 0 0 0 chr6 137525095 137525119 -44890123 + AT_rich Low_complexity Low_complexity 1 24 0 1926 127 0 41 chr6 137526292 137526607 -44888635 + AluJb SINE Alu 1 302 -10 194 358 37 51 chr6 137527144 137527359 -44887883 + L2 LINE L2 2966 3177 -95 213 197 0 0 chr6 137527402 137527468 -44887774 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 288 0 0 0 chr6 137528017 137528049 -44887193 + (T)n Simple_repeat Simple_repeat 1 32 0 2630 29 7 3 chr6 137528541 137528848 -44886394 + AluY SINE Alu 1 308 -3 24 91 0 0 chr6 137529794 137529860 -44885382 + AT_rich Low_complexity Low_complexity 1 66 0 228 324 166 22 chr6 137530158 137530297 -44884945 - MIR SINE MIR -6 256 98 270 56 0 0 chr6 137530907 137530943 -44884299 + (CA)n Simple_repeat Simple_repeat 2 37 0 262 178 28 28 chr6 137531578 137531685 -44883557 + CT-rich Low_complexity Low_complexity 3 109 0 208 295 0 0 chr6 137533013 137533074 -44882168 - MIR SINE MIR -5 257 197 2399 88 0 0 chr6 137533127 137533423 -44881819 + AluY SINE Alu 1 296 -15 772 283 108 9 chr6 137533435 137533891 -44881351 + L1ME4a LINE L1 5618 6118 -3 1033 308 71 27 chr6 137534841 137535318 -44879924 + MLT1D LTR MaLR 1 498 -7 324 295 20 67 chr6 137536718 137536867 -44878375 - MIR3 SINE MIR -5 203 62 531 314 64 26 chr6 137537776 137538020 -44877222 + MIR SINE MIR 14 262 0 25 65 0 0 chr6 137539213 137539259 -44875983 + AT_rich Low_complexity Low_complexity 1 46 0 1873 202 50 12 chr6 137539516 137539932 -44875310 + MSTB1 LTR MaLR 1 432 0 239 239 28 14 chr6 137540122 137540193 -44875049 - LTR33A LTR ERVL 0 523 452 183 80 0 0 chr6 137540715 137540740 -44874502 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 3297 314 70 19 chr6 137540929 137541479 -44873763 - ERVL LTR ERVL -315 5449 4928 1739 142 65 44 chr6 137541479 137541846 -44873396 + THE1C LTR MaLR 1 375 0 3297 314 70 19 chr6 137541846 137542729 -44872513 - ERVL LTR ERVL -836 4928 3943 374 319 129 0 chr6 137542835 137542998 -44872244 - ERVL LTR ERVL -1955 3809 3626 382 250 12 0 chr6 137543166 137543246 -44871996 - ERVL LTR ERVL -2143 3511 3431 1674 187 33 40 chr6 137543271 137543506 -44871736 - L1ME2 LINE L1 -9 6224 5990 423 301 25 15 chr6 137543506 137543705 -44871537 - L1PB1 LINE L1 -227 5924 5724 6828 18 6 1 chr6 137543712 137544510 -44870732 - L1PA3 LINE L1 0 6155 5354 1277 234 63 30 chr6 137544509 137545218 -44870024 - L1ME2 LINE L1 -481 5752 5013 * 210 119 48 0 chr6 137545305 137545347 -44869895 + (CTTAA)n Simple_repeat Simple_repeat 4 47 0 706 223 54 0 chr6 137545347 137545513 -44869729 + L1P LINE L1 2435 2609 -3537 2267 227 90 12 chr6 137545521 137546108 -44869134 - L1ME2 LINE L1 -5431 965 333 468 147 27 0 chr6 137546827 137546902 -44868340 - FRAM SINE Alu -31 145 69 238 179 0 0 chr6 137546942 137546981 -44868261 - Alu SINE Alu -179 123 85 264 197 15 30 chr6 137548163 137548229 -44867013 - L2 LINE L2 -67 3246 3182 23 105 0 0 chr6 137549033 137549119 -44866123 + AT_rich Low_complexity Low_complexity 1 86 0 1264 232 120 60 chr6 137549286 137549785 -44865457 + MLT1D LTR MaLR 1 653 -1 192 275 0 0 chr6 137549878 137549918 -44865324 - MIR SINE MIR -219 43 4 707 125 39 0 chr6 137551031 137551135 -44864107 - MER30B DNA MER1_type -1 229 122 1046 102 12 0 chr6 137551135 137551302 -44863940 + L1PA8A LINE L1 5105 5273 -873 4908 72 3 9 chr6 137551302 137551951 -44863291 + L1PA8A LINE L1 5479 6125 -6 806 76 6 8 chr6 137551952 137552082 -44863160 - MER30B DNA MER1_type -80 110 1 212 286 134 27 chr6 137552131 137552243 -44862999 + MIR SINE MIR 102 225 -37 2165 108 3 7 chr6 137553150 137553446 -44861796 - AluSp SINE Alu -4 309 15 225 224 61 0 chr6 137555504 137555553 -44859689 - L2 LINE L2 0 3313 3262 237 397 17 9 chr6 137555604 137555720 -44859522 - L2 LINE L2 -28 3285 3169 863 304 83 28 chr6 137557252 137557791 -44857451 + MLT1K LTR MaLR 10 578 -10 31 26 0 0 chr6 137558640 137558678 -44856564 + AT_rich Low_complexity Low_complexity 1 38 0 551 244 23 83 chr6 137558678 137558786 -44856456 - L1ME3A LINE L1 -20 6150 6060 2891 6 0 0 chr6 137558786 137559104 -44856138 + AluYb8 SINE Alu 1 318 0 551 244 23 83 chr6 137559104 137559212 -44856030 - L1ME3A LINE L1 -110 6060 5947 2061 159 17 25 chr6 137560139 137560541 -44854701 + L1MA7 LINE L1 5893 6291 0 241 282 0 29 chr6 137561618 137561721 -44853521 + (TA)n Simple_repeat Simple_repeat 1 100 0 2039 102 67 0 chr6 137561800 137562085 -44853157 - AluSx SINE Alu -8 304 1 27 49 0 0 chr6 137564114 137564155 -44851087 + AT_rich Low_complexity Low_complexity 1 41 0 1211 249 12 0 chr6 137567083 137567324 -44847918 + MIR SINE MIR 8 251 -11 246 176 0 0 chr6 137567327 137567378 -44847864 + (TG)n Simple_repeat Simple_repeat 2 52 0 7465 26 9 0 chr6 137568039 137569533 -44845709 + L1PA4 LINE L1 4652 6154 -1 4677 98 62 4 chr6 137570798 137571144 -44844098 - L1PB1 LINE L1 0 6151 5826 458 17 17 0 chr6 137571144 137571203 -44844039 + (CA)n Simple_repeat Simple_repeat 2 61 0 4677 98 62 4 chr6 137571203 137571569 -44843673 - L1PB1 LINE L1 -325 5826 5398 5372 112 8 0 chr6 137571569 137572318 -44842924 - HSMAR1 DNA Mariner -532 755 1 301 390 76 40 chr6 137572457 137572785 -44842457 - L2 LINE L2 -10 3262 2923 1072 291 47 39 chr6 137573681 137574217 -44841025 + MLT1L LTR MaLR 66 605 -10 587 247 35 12 chr6 137574330 137574500 -44840742 - L1MA10 LINE L1 0 6334 6161 775 202 28 53 chr6 137574520 137574767 -44840475 + L1M4c LINE L1 2227 2467 -3917 2765 279 43 26 chr6 137574769 137576582 -44838660 - L1M1 LINE L1 -4150 2956 1 582 262 74 64 chr6 137576639 137577032 -44838210 - MER34 LTR ERV1 -142 400 4 21 0 0 0 chr6 137577259 137577280 -44837962 + AT_rich Low_complexity Low_complexity 1 21 0 994 132 0 0 chr6 137578747 137578891 -44836351 + AluSc SINE Alu 155 298 -11 280 333 13 0 chr6 137579199 137579277 -44835965 - L2 LINE L2 -11 3261 3183 202 350 50 0 chr6 137579662 137579762 -44835480 - L2 LINE L2 -1407 1907 1803 2393 80 0 0 chr6 137579814 137580113 -44835129 + AluSc SINE Alu 1 299 -10 641 49 0 0 chr6 137580127 137580237 -44835005 + L1PA3 LINE L1 6071 6180 0 201 121 0 0 chr6 137582399 137582432 -44832810 + (A)n Simple_repeat Simple_repeat 1 33 0 195 167 0 0 chr6 137582583 137582625 -44832617 + (CAT)n Simple_repeat Simple_repeat 1 42 0 1469 184 6 34 chr6 137582819 137583139 -44832103 - AluJo SINE Alu -1 311 1 259 315 135 34 chr6 137583357 137583535 -44831707 - MLT1J2 LTR MaLR 0 450 255 266 269 29 29 chr6 137583594 137583698 -44831544 - MLT1J2 LTR MaLR -332 118 15 950 167 86 43 chr6 137586601 137586811 -44828431 + MER20 DNA MER1_type 1 219 0 1029 304 84 20 chr6 137587321 137587761 -44827481 + LTR33 LTR ERVL 2 469 -52 1993 113 7 30 chr6 137587964 137588265 -44826977 - AluSx SINE Alu -18 294 1 488 184 11 0 chr6 137588738 137588825 -44826417 + 5S rRNA rRNA 1 88 -33 189 368 79 0 chr6 137589306 137589382 -44825860 - L2 LINE L2 -22 3291 3210 40 37 0 0 chr6 137590055 137590109 -44825133 + AT_rich Low_complexity Low_complexity 1 54 0 3014 221 74 22 chr6 137590257 137591185 -44824057 - L1ME1 LINE L1 -38 6128 5168 365 284 132 53 chr6 137591219 137591647 -44823595 - L1ME3A LINE L1 -208 5962 5503 326 330 64 4 chr6 137591744 137591980 -44823262 - L1ME3A LINE L1 -748 5398 5149 1157 265 117 56 chr6 137592092 137592608 -44822634 + L1MC4 LINE L1 6729 7212 -830 1910 136 79 17 chr6 137592608 137592961 -44822281 + THE1C LTR MaLR 1 375 0 9229 116 46 46 chr6 137592961 137594540 -44820702 + THE1C-int LTR MaLR 1 1580 0 1994 118 92 9 chr6 137594540 137594886 -44820356 + THE1C LTR MaLR 1 375 0 1157 265 117 56 chr6 137594886 137595083 -44820159 + L1MC4 LINE L1 7211 7488 -554 677 172 0 8 chr6 137595253 137595375 -44819867 + FLAM_C SINE Alu 1 121 -12 258 286 63 16 chr6 137595541 137595667 -44819575 + L1MC4 LINE L1 7709 7840 -202 228 347 82 0 chr6 137595672 137595770 -44819472 - L3 LINE CR1 -181 1396 1291 23 33 0 0 chr6 137595807 137595837 -44819405 + AT_rich Low_complexity Low_complexity 1 30 0 204 205 55 39 chr6 137596063 137596071 -44819171 + (TA)n Simple_repeat Simple_repeat 2 8 -122 2266 96 0 0 chr6 137596071 137596362 -44818880 + AluY SINE Alu 1 291 -20 204 205 55 39 chr6 137596362 137596480 -44818762 + (TA)n Simple_repeat Simple_repeat 8 130 0 * 240 192 58 19 chr6 137596419 137596523 -44818719 + (TTATA)n Simple_repeat Simple_repeat 4 111 0 508 155 39 29 chr6 137596525 137596628 -44818614 + FLAM_C SINE Alu 24 127 -16 431 310 112 29 chr6 137597417 137597659 -44817583 + MIR SINE MIR 1 262 0 2592 48 0 0 chr6 137598263 137598574 -44816668 - AluY SINE Alu 0 311 1 4536 175 17 28 chr6 137600767 137601688 -44813554 - L1MB8 LINE L1 -5 6173 5263 29 0 0 0 chr6 137602936 137602965 -44812277 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr6 137603526 137603575 -44811667 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr6 137603685 137603711 -44811531 + AT_rich Low_complexity Low_complexity 1 26 0 335 143 0 0 chr6 137605073 137605122 -44810120 - L1PA16 LINE L1 -82 6084 6036 399 113 75 12 chr6 137605122 137605202 -44810040 + L1PA16 LINE L1 6080 6164 -2 341 321 85 27 chr6 137606851 137607075 -44808167 + MIR SINE MIR 21 257 -5 2242 135 0 0 chr6 137607256 137607568 -44807674 + AluSx SINE Alu 1 312 0 552 361 69 0 chr6 137608592 137609034 -44806208 - L2 LINE L2 -249 3064 2596 553 287 55 51 chr6 137609642 137609688 -44805554 + Charlie2 DNA MER1_type 32 76 -2706 1445 102 70 0 chr6 137609688 137609903 -44805339 - MER30 DNA MER1_type 0 230 1 553 287 55 51 chr6 137609903 137610149 -44805093 + Charlie2 DNA MER1_type 76 325 -2457 2505 221 72 35 chr6 137610152 137611054 -44804188 + Charlie2 DNA MER1_type 1857 2791 -71 490 285 121 6 chr6 137611225 137611390 -44803852 + MIR SINE MIR 17 200 -62 309 264 27 9 chr6 137611965 137612075 -44803167 + L1ME LINE L1 4501 4612 -1534 240 320 102 40 chr6 137612673 137612898 -44802344 - L3 LINE CR1 -675 902 664 323 178 40 0 chr6 137613217 137613318 -44801924 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 207 258 278 10 chr6 137616836 137616933 -44798309 - MIR SINE MIR -115 147 25 223 354 92 8 chr6 137617464 137617594 -44797648 + L2 LINE L2 3173 3313 0 316 153 14 14 chr6 137617740 137617812 -44797430 + GA-rich Low_complexity Low_complexity 4 75 0 611 94 0 10 chr6 137618974 137619070 -44796172 - L1MB3 LINE L1 -7 6176 6082 652 199 0 29 chr6 137619283 137619419 -44795823 + FLAM_A SINE Alu 1 132 -1 189 21 21 104 chr6 137619659 137619707 -44795535 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 275 288 71 40 chr6 137620410 137620660 -44794582 + L1ME LINE L1 5318 5586 -535 399 226 43 52 chr6 137620670 137620785 -44794457 - L2 LINE L2 0 3313 3200 656 259 44 13 chr6 137620788 137621016 -44794226 + L1ME LINE L1 5586 5820 -301 338 201 90 60 chr6 137621225 137621359 -44793883 + L1ME4a LINE L1 5384 5521 -600 739 233 138 61 chr6 137622006 137622428 -44792814 + L1ME4a LINE L1 5610 6073 -48 1984 122 14 0 chr6 137622428 137622715 -44792527 - AluSx SINE Alu -21 291 1 739 233 138 61 chr6 137622715 137622764 -44792478 + L1ME4a LINE L1 6073 6117 -4 311 327 0 9 chr6 137623011 137623121 -44792121 + MIR SINE MIR 127 235 -27 2063 129 10 0 chr6 137623283 137623578 -44791664 - AluSx SINE Alu -14 298 1 201 39 0 0 chr6 137625495 137625521 -44789721 + (CA)n Simple_repeat Simple_repeat 1 26 0 455 272 96 62 chr6 137625874 137626146 -44789096 + L1MEc LINE L1 2119 2399 -3997 1994 246 53 18 chr6 137626971 137627462 -44787780 + MLT2B3 LTR ERVL 1 508 -46 285 266 14 7 chr6 137627462 137627601 -44787641 + (TA)n Simple_repeat Simple_repeat 1 140 0 359 267 39 58 chr6 137627688 137627973 -44787269 - L1MEc LINE L1 -851 1725 1427 4044 147 44 4 chr6 137627973 137628653 -44786589 - MER39 LTR ERV1 0 707 1 1317 184 57 32 chr6 137628707 137629022 -44786220 - MER44D DNA MER2_type 0 609 17 1686 194 10 3 chr6 137629316 137629625 -44785617 - AluJb SINE Alu -1 311 1 203 137 0 39 chr6 137629840 137629891 -44785351 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1986 94 0 18 chr6 137630056 137630332 -44784910 - AluY SINE Alu 0 311 41 1447 209 50 82 chr6 137630811 137631144 -44784098 - MER39 LTR ERV1 0 707 392 2684 146 27 5 chr6 137631144 137631582 -44783660 + MER83 LTR ERV1 1 448 0 1447 209 50 82 chr6 137631582 137631711 -44783531 - MER39 LTR ERV1 -315 392 260 235 264 35 46 chr6 137631697 137631784 -44783458 - LTR48B LTR ERV1 -555 89 4 * 966 366 20 5 chr6 137632012 137632411 -44782831 + LTR16C LTR ERVL 87 491 0 2795 163 198 47 chr6 137632577 137633295 -44781947 + LTR1B LTR ERV1 1 826 0 39 88 0 0 chr6 137633692 137633794 -44781448 + AT_rich Low_complexity Low_complexity 1 102 0 2213 126 15 9 chr6 137634502 137634843 -44780399 - MER61A LTR ERV1 0 343 1 640 192 20 26 chr6 137635018 137635169 -44780073 - MER31A LTR ERV1 0 485 336 27 29 0 0 chr6 137635185 137635219 -44780023 + AT_rich Low_complexity Low_complexity 1 34 0 228 270 32 0 chr6 137636131 137636194 -44779048 + L2 LINE L2 2230 2294 -1020 1239 76 43 9 chr6 137636206 137636417 -44778825 - LTR7 LTR ERV1 -2 448 231 2152 175 22 0 chr6 137636614 137637014 -44778228 + L1MA5A LINE L1 5886 6294 -3 546 99 12 0 chr6 137637030 137637111 -44778131 - HY3 scRNA scRNA -19 82 1 601 300 43 55 chr6 137637154 137637407 -44777835 + L1PA13 LINE L1 515 764 -6023 287 351 90 15 chr6 137637455 137637589 -44777653 + L1PA13 LINE L1 738 881 -5906 5096 223 18 11 chr6 137637650 137638807 -44776435 + L1PA13 LINE L1 1180 2278 -4509 332 326 0 0 chr6 137638904 137639082 -44776160 + T-rich Low_complexity Low_complexity 1 178 0 523 111 0 12 chr6 137639673 137639754 -44775488 + MADE1 DNA Mariner 1 80 0 23 54 0 0 chr6 137639921 137639958 -44775284 + AT_rich Low_complexity Low_complexity 1 37 0 503 332 98 25 chr6 137640542 137641030 -44774212 + L2 LINE L2 590 1113 -2201 343 314 57 54 chr6 137641035 137641442 -44773800 - LTR67 LTR ERVL 0 557 150 331 210 12 0 chr6 137641812 137641893 -44773349 + L1MC5 LINE L1 7819 7900 -61 417 282 23 40 chr6 137641911 137642085 -44773157 - LTR67 LTR ERVL -73 484 314 239 276 26 0 chr6 137642112 137642188 -44773054 - L1M4 LINE L1 -3137 3009 2932 10254 155 10 44 chr6 137642412 137644341 -44770901 + L1P LINE L1 11 1874 -4272 2087 43 0 99 chr6 137644441 137644763 -44770479 - LTR7 LTR ERV1 -160 290 1 1228 280 45 39 chr6 137644768 137645257 -44769985 + L2 LINE L2 2346 2837 -477 354 367 56 15 chr6 137645539 137645808 -44769434 + L1M4b LINE L1 1318 1770 -5325 616 254 35 77 chr6 137645932 137646235 -44769007 + L1M4b LINE L1 1976 2247 -4891 4231 133 13 12 chr6 137646235 137646922 -44768320 + L1PA15 LINE L1 5471 6158 -7 616 254 35 77 chr6 137646922 137647166 -44768076 + L1M4b LINE L1 2247 2500 -4638 1081 127 7 0 chr6 137647596 137647746 -44767496 + AluSq/x SINE Alu 1 151 -162 182 204 111 0 chr6 137649246 137649300 -44765942 + MER5C DNA MER1_type 86 145 -179 281 200 67 27 chr6 137649928 137650003 -44765239 - REP3 LTR ERV -291 271 194 614 256 52 6 chr6 137650021 137650430 -44764812 - L1 LINE L1 -1622 4524 3965 249 271 30 34 chr6 137650447 137650709 -44764533 - L1ME LINE L1 -5178 941 681 2560 187 4 11 chr6 137651267 137651738 -44763504 + Tigger3b DNA MER2_type 1 468 -763 328 310 7 19 chr6 137651855 137652010 -44763232 + C-rich Low_complexity Low_complexity 5 157 0 1518 135 7 169 chr6 137652110 137652525 -44762717 + Tigger3b DNA MER2_type 884 1231 0 23 0 0 0 chr6 137652531 137652554 -44762688 + AT_rich Low_complexity Low_complexity 1 23 0 343 296 42 85 chr6 137652734 137653041 -44762201 - L1ME LINE L1 -5823 296 3 301 26 51 0 chr6 137653431 137653470 -44761772 - L1P2 LINE L1 -484 5670 5630 1792 53 0 0 chr6 137653470 137653690 -44761552 + L1PA4 LINE L1 5925 6152 -3 629 131 167 54 chr6 137653777 137653945 -44761297 + MER53 DNA DNA 3 189 0 2221 95 0 3 chr6 137655436 137655746 -44759496 + AluSx SINE Alu 1 309 0 458 254 33 16 chr6 137656684 137656806 -44758436 - L2 LINE L2 0 3313 3190 235 152 0 0 chr6 137656867 137656913 -44758329 + LTR66 LTR ERVL 394 439 -171 * 312 277 0 43 chr6 137656889 137656983 -44758259 - L1MC4 LINE L1 -1339 6703 6614 270 206 0 0 chr6 137656923 137656991 -44758251 + (TA)n Simple_repeat Simple_repeat 2 69 0 * 625 333 92 0 chr6 137657002 137657406 -44757836 - L2 LINE L2 -163 3150 2698 1797 195 27 3 chr6 137657420 137657754 -44757488 + L1M1 LINE L1 786 1127 -6439 810 253 116 32 chr6 137658453 137658650 -44756592 - L1ME LINE L1 -346 5818 5639 2804 120 13 22 chr6 137658650 137659099 -44756143 - MER65A LTR ERV1 0 445 1 810 253 116 32 chr6 137659099 137659272 -44755970 - L1ME LINE L1 -525 5639 5417 7898 75 5 5 chr6 137659281 137661141 -44754101 - L1PA7 LINE L1 -5 6149 4290 5759 95 33 0 chr6 137661141 137661939 -44753303 + L1PA6 LINE L1 746 1569 -4892 22201 71 16 4 chr6 137662039 137665105 -44750137 + L1PA6 LINE L1 2203 5283 -1178 6920 65 8 0 chr6 137665121 137666341 -44748901 + L1PA6 LINE L1 5240 6466 -3 628 280 7 0 chr6 137666593 137666743 -44748499 - MLT1B LTR MaLR -76 314 164 240 211 35 35 chr6 137666786 137666843 -44748399 + L1M4b LINE L1 360 416 -6443 234 0 0 0 chr6 137666979 137667005 -44748237 + (A)n Simple_repeat Simple_repeat 1 26 0 376 269 47 4 chr6 137667005 137667238 -44748004 + L1M1 LINE L1 2824 3077 -849 226 223 104 57 chr6 137667677 137667888 -44747354 + L1M1 LINE L1 3551 3771 -3794 547 337 59 7 chr6 137668050 137668454 -44746788 + L1M1 LINE L1 4753 5177 -2388 25 75 0 0 chr6 137668454 137668507 -44746735 + AT_rich Low_complexity Low_complexity 1 53 0 13170 219 36 21 chr6 137668788 137668938 -44746304 + L1PA6 LINE L1 1976 2122 -4032 2259 108 47 36 chr6 137668938 137669298 -44745944 - THE1B LTR MaLR 0 364 1 13170 219 36 21 chr6 137669298 137670766 -44744476 + L1PA6 LINE L1 2122 3566 -2588 2067 143 3 0 chr6 137670766 137671073 -44744169 + AluSx SINE Alu 1 308 -4 13170 219 36 21 chr6 137671073 137672119 -44743123 + L1PA6 LINE L1 3566 4595 -1559 2657 127 0 5 chr6 137672119 137672496 -44742746 - THE1C LTR MaLR 0 375 1 9583 124 15 58 chr6 137672496 137674147 -44741095 - THE1C-int LTR MaLR 0 1580 1 2148 144 14 11 chr6 137674149 137674510 -44740732 - THE1B LTR MaLR -2 362 1 13170 219 36 21 chr6 137674510 137674528 -44740714 + L1PA6 LINE L1 4595 4611 -1543 2344 77 3 3 chr6 137674528 137674828 -44740414 + AluY SINE Alu 1 300 -11 13170 219 36 21 chr6 137674828 137674887 -44740355 + L1PA6 LINE L1 4611 4668 -1486 2373 168 26 0 chr6 137674887 137675304 -44739938 - MSTA LTR MaLR 0 428 1 13170 219 36 21 chr6 137675304 137676464 -44738778 + L1PA6 LINE L1 4668 5938 -216 534 198 0 0 chr6 137676579 137676675 -44738567 + MER34 LTR ERV1 1 96 -446 * 781 244 121 52 chr6 137676667 137676861 -44738381 + LTR48B LTR ERV1 128 307 -337 1780 179 7 0 chr6 137676861 137677162 -44738080 - AluJb SINE Alu -9 303 1 781 244 121 52 chr6 137677162 137677183 -44738059 + LTR48B LTR ERV1 307 325 -319 2311 165 36 5 chr6 137677183 137677596 -44737646 - MSTB LTR MaLR 0 426 1 781 244 121 52 chr6 137677596 137677817 -44737425 + LTR48B LTR ERV1 325 595 -49 354 267 0 9 chr6 137677937 137678042 -44737200 - L1M4 LINE L1 -1058 5088 4985 822 111 8 0 chr6 137678043 137678160 -44737082 - AluSg/x SINE Alu -18 294 177 3426 266 40 40 chr6 137678201 137679796 -44735446 - L1M4 LINE L1 -1179 4967 3372 5629 166 15 54 chr6 137679868 137681069 -44734173 + L1M1 LINE L1 5293 6446 -1119 1444 118 0 5 chr6 137681078 137681281 -44733961 + AluSx SINE Alu 10 211 -101 1040 150 0 6 chr6 137681283 137681443 -44733799 + AluSg/x SINE Alu 134 292 -18 6192 92 12 7 chr6 137681446 137682580 -44732662 + L1PA13 LINE L1 5024 6161 -2 221 325 48 12 chr6 137682886 137682969 -44732273 - L2 LINE L2 0 3272 3187 391 275 44 4 chr6 137683898 137684058 -44731184 - L1MD2 LINE L1 -1 7807 6240 * 3430 259 72 8 chr6 137684034 137684711 -44730531 + L1MD2 LINE L1 3362 4146 -2000 2528 159 21 5 chr6 137684711 137685132 -44730110 + MSTC LTR MaLR 1 428 0 3430 259 72 8 chr6 137685132 137685628 -44729614 + L1MD2 LINE L1 4146 4609 -1537 1941 226 52 35 chr6 137685740 137686600 -44728642 + L1MD2 LINE L1 4971 5833 -409 350 241 19 19 chr6 137686700 137686808 -44728434 + L1MD2 LINE L1 5826 5933 -426 * 1074 235 80 76 chr6 137686799 137687311 -44727931 - L1MEc LINE L1 -3383 2832 2349 1721 133 66 16 chr6 137687311 137687628 -44727614 + L1MA8 LINE L1 5955 6287 -4 1074 235 80 76 chr6 137687628 137687914 -44727328 - L1MEc LINE L1 -3866 2349 2066 260 292 28 0 chr6 137687946 137688018 -44727224 - MER58C DNA MER1_type -15 200 127 229 250 62 12 chr6 137688057 137688137 -44727105 - MER58C DNA MER1_type -81 134 51 1370 270 65 74 chr6 137688211 137689239 -44726003 - L1MEc LINE L1 -4352 2044 1026 204 200 0 0 chr6 137689254 137689299 -44725943 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 249 251 35 23 chr6 137689331 137689502 -44725740 + (TA)n Simple_repeat Simple_repeat 1 173 0 2785 276 45 11 chr6 137689542 137690464 -44724778 - L1MEc LINE L1 -5409 987 35 286 366 58 47 chr6 137690465 137690644 -44724598 + L2 LINE L2 2590 2766 -506 219 36 0 0 chr6 137690644 137690672 -44724570 + (CA)n Simple_repeat Simple_repeat 1 28 0 286 366 58 47 chr6 137690672 137690912 -44724330 + L2 LINE L2 2766 3011 -261 351 289 62 38 chr6 137692420 137692631 -44722611 - L1ME1 LINE L1 -257 5909 5694 357 265 148 16 chr6 137692902 137693091 -44722151 + Charlie8 DNA MER1_type 29 242 -2175 322 321 107 0 chr6 137693210 137693341 -44721901 - MLT1L LTR MaLR -208 407 263 894 217 139 22 chr6 137693382 137693708 -44721534 - MSTD LTR MaLR 0 396 1 251 296 31 41 chr6 137695614 137695712 -44719530 - L2 LINE L2 -1 3312 3216 221 368 191 20 chr6 137695875 137696027 -44719215 + MIR3 SINE MIR 16 193 -15 28 29 0 0 chr6 137696408 137696443 -44718799 + AT_rich Low_complexity Low_complexity 1 35 0 805 159 24 12 chr6 137696443 137696613 -44718629 - L1PB2 LINE L1 -1 6150 5979 10405 215 55 4 chr6 137696757 137700119 -44715123 - L1PB2 LINE L1 -75 6076 2542 312 275 8 17 chr6 137700182 137700302 -44714940 - L1MC5 LINE L1 -26 7935 7817 280 326 101 0 chr6 137700478 137700607 -44714635 - MERVL LTR ERVL -1963 3522 3381 921 232 109 50 chr6 137700935 137701370 -44713872 - MLT1C LTR MaLR 0 467 1 305 296 23 98 chr6 137701583 137702023 -44713219 - HAL1b LINE L1 -737 611 205 297 0 0 0 chr6 137702182 137702215 -44713027 + (TG)n Simple_repeat Simple_repeat 2 34 0 720 196 133 15 chr6 137703235 137703415 -44711827 - MLT1C LTR MaLR -2 465 286 31 44 0 0 chr6 137703467 137703512 -44711730 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr6 137704014 137704040 -44711202 + AT_rich Low_complexity Low_complexity 1 26 0 2233 97 7 3 chr6 137704049 137704338 -44710904 - AluY SINE Alu -21 290 1 495 335 37 5 chr6 137704417 137704608 -44710634 - MIR SINE MIR -64 198 2 2574 200 36 36 chr6 137705070 137705149 -44710093 + MLT2B3 LTR ERVL 1 79 -475 2165 150 21 16 chr6 137705149 137705522 -44709720 - THE1C LTR MaLR 0 375 1 2574 200 36 36 chr6 137705522 137705996 -44709246 + MLT2B3 LTR ERVL 78 554 0 22 35 0 0 chr6 137706396 137706425 -44708817 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 137706589 137706617 -44708625 + AT_rich Low_complexity Low_complexity 1 28 0 2253 89 0 13 chr6 137706648 137706950 -44708292 - AluSx SINE Alu -14 298 1 494 359 51 25 chr6 137706982 137707375 -44707867 + L1ME LINE L1 2 404 -5666 483 191 11 0 chr6 137707532 137707621 -44707621 + MLT1C LTR MaLR 378 467 0 804 272 72 27 chr6 137707624 137708025 -44707217 + L1M4 LINE L1 3750 4168 -1978 4566 156 54 52 chr6 137708034 137709072 -44706170 + L1MC1 LINE L1 5186 6222 -111 411 113 28 0 chr6 137709074 137709145 -44706097 + L1MC1 LINE L1 6261 6333 0 332 201 7 162 chr6 137709156 137709310 -44705932 + L1M4 LINE L1 4163 4292 -1854 826 285 24 42 chr6 137709312 137709695 -44705547 + L1M4 LINE L1 3586 3961 -2185 1303 202 47 24 chr6 137709698 137709995 -44705247 + AluJb SINE Alu 1 304 -8 1806 211 30 13 chr6 137710029 137710470 -44704772 - MLT2D LTR ERVL 0 554 2 1961 258 48 8 chr6 137710471 137711060 -44704182 + L1M4 LINE L1 3976 4587 -1559 560 237 0 30 chr6 137711067 137711198 -44704044 + MER58B DNA MER1_type 206 332 -9 249 247 258 0 chr6 137711354 137711447 -44703795 + L2 LINE L2 3197 3313 0 24 32 0 0 chr6 137711769 137711800 -44703442 + AT_rich Low_complexity Low_complexity 1 31 0 322 300 60 0 chr6 137713703 137713803 -44701439 + L2 LINE L2 3166 3271 -1 189 226 38 19 chr6 137714529 137714582 -44700660 + MIR SINE MIR 203 256 -6 23 0 0 0 chr6 137815072 137815095 -44600147 + AT_rich Low_complexity Low_complexity 1 23 0 261 262 172 69 chr6 137817368 137817513 -44597729 - MIR SINE MIR -32 230 71 347 179 26 0 chr6 137818321 137818399 -44596843 + MER116 DNA Mariner 1 80 0 272 262 0 0 chr6 137819379 137819440 -44595802 - L2 LINE L2 -9 3304 3244 189 0 0 0 chr6 137819765 137819786 -44595456 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 400 293 115 11 chr6 137822495 137822669 -44592573 + MIR SINE MIR 14 205 -57 23 33 0 0 chr6 137823385 137823415 -44591827 + AT_rich Low_complexity Low_complexity 1 30 0 846 304 46 0 chr6 137824488 137824728 -44590514 - MIR SINE MIR -1 261 11 300 265 24 45 chr6 137826111 137826256 -44588986 - L1ME LINE L1 -346 5818 5675 2404 62 0 3 chr6 137826325 137826341 -44588901 - AluY SINE Alu -8 303 288 186 71 0 0 chr6 137826341 137826369 -44588873 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 2404 62 0 3 chr6 137826369 137826656 -44588586 - AluY SINE Alu -23 288 1 25 31 0 0 chr6 137827281 137827313 -44587929 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr6 137828591 137828633 -44586609 + AT_rich Low_complexity Low_complexity 1 42 0 445 182 61 0 chr6 137829568 137829667 -44585575 + MIR SINE MIR 39 143 -119 3535 184 8 63 chr6 137829750 137829828 -44585414 + L1MA10 LINE L1 5543 5624 -710 2069 123 0 13 chr6 137829828 137830129 -44585113 + AluSx SINE Alu 1 297 -15 3535 184 8 63 chr6 137830129 137830871 -44584371 + L1MA10 LINE L1 5624 6318 -16 1863 265 17 10 chr6 137831024 137831507 -44583735 + LTR40a LTR ERVL 30 515 -4 531 185 76 38 chr6 137831521 137831678 -44583564 - L1MB7 LINE L1 -31 6153 5991 1632 265 58 54 chr6 137831692 137832300 -44582942 - L2 LINE L2 -623 2691 2082 1064 173 14 0 chr6 137832529 137832749 -44582493 + L1MA7 LINE L1 6069 6291 0 25 0 0 0 chr6 137832819 137832844 -44582398 + AT_rich Low_complexity Low_complexity 1 25 0 1435 200 46 0 chr6 137833608 137833893 -44581349 + AluJb SINE Alu 3 300 -12 4756 179 70 10 chr6 137833961 137835588 -44579654 - L1MA7 LINE L1 -204 6087 4373 303 298 58 0 chr6 137836051 137836155 -44579087 + MARNA DNA Mariner 438 547 -39 2755 7 0 0 chr6 137836451 137836752 -44578490 + AluYa5 SINE Alu 1 301 -10 2520 48 0 0 chr6 137838977 137839269 -44575973 - AluY SINE Alu -14 297 6 931 259 49 8 chr6 137839550 137839793 -44575449 - MIR SINE MIR 0 262 10 202 205 0 0 chr6 137839806 137839845 -44575397 + (CA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr6 137839986 137840010 -44575232 + AT_rich Low_complexity Low_complexity 1 24 0 217 118 39 0 chr6 137840652 137840703 -44574539 + (CA)n Simple_repeat Simple_repeat 2 54 0 1678 133 78 63 chr6 137841292 137841624 -44573618 - MER1B DNA MER1_type 0 337 1 243 292 42 0 chr6 137842086 137842158 -44573084 + L3 LINE CR1 1406 1480 -97 226 50 50 0 chr6 137843312 137843352 -44571890 + (GA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr6 137844318 137844339 -44570903 + AT_rich Low_complexity Low_complexity 1 21 0 313 291 112 15 chr6 137844571 137844705 -44570537 - L2 LINE L2 -5 3308 3162 1018 278 88 6 chr6 137845609 137845929 -44569313 - L2 LINE L2 -1114 2200 1855 1781 180 34 0 chr6 137846093 137846415 -44568827 - MER2 DNA MER2_type 0 345 13 276 137 0 0 chr6 137848657 137848708 -44566534 + (TG)n Simple_repeat Simple_repeat 2 52 0 1129 264 31 59 chr6 137848830 137849001 -44566241 - L1MC4a LINE L1 -1958 5850 5676 1483 182 22 33 chr6 137849001 137849369 -44565873 - MLT1A1 LTR MaLR 0 365 2 1129 264 31 59 chr6 137849369 137849808 -44565434 - L1MC4a LINE L1 -2132 5676 5257 189 0 0 0 chr6 137851021 137851042 -44564200 + (TTA)n Simple_repeat Simple_repeat 2 22 0 353 335 20 13 chr6 137851052 137851204 -44564038 + MIR SINE MIR 40 192 -70 348 286 229 0 chr6 137851336 137851476 -44563766 - MER5A DNA MER1_type 0 189 18 23 68 0 0 chr6 137853055 137853099 -44562143 + AT_rich Low_complexity Low_complexity 1 44 0 666 157 9 0 chr6 137854739 137854854 -44560388 - L1PA10 LINE L1 -1 6167 6052 270 210 161 0 chr6 137854877 137854958 -44560284 - HAL1 LINE L1 -2385 122 29 * 1714 132 18 4 chr6 137854944 137855249 -44559993 + L1PA8 LINE L1 5771 6078 -96 1874 162 49 0 chr6 137856492 137856819 -44558423 - MER2 DNA MER2_type -1 343 1 658 167 0 72 chr6 137858213 137858328 -44556914 + FLAM_A SINE Alu 1 106 -205 1775 149 83 9 chr6 137858328 137858677 -44556565 - THE1C LTR MaLR 0 375 1 658 167 0 72 chr6 137858677 137858699 -44556543 + FLAM_A SINE Alu 106 128 -183 504 255 99 110 chr6 137858876 137859311 -44555931 + L1MC/D LINE L1 5255 5684 -2124 246 159 0 130 chr6 137859356 137859425 -44555817 - MIR SINE MIR -7 255 196 203 152 0 0 chr6 137859777 137859810 -44555432 + (CA)n Simple_repeat Simple_repeat 1 33 0 365 362 29 14 chr6 137860039 137860249 -44554993 - MIR SINE MIR -38 224 12 496 308 71 29 chr6 137860337 137860577 -44554665 + MIR SINE MIR 13 262 0 286 171 143 14 chr6 137860735 137860805 -44554437 - MER116 DNA Mariner -1 79 1 2143 96 3 10 chr6 137860940 137861232 -44554010 + AluSg SINE Alu 1 290 -20 2151 239 46 18 chr6 137861665 137862276 -44552966 - L1ME2 LINE L1 -114 6033 5406 263 174 0 0 chr6 137862287 137862333 -44552909 - L1ME2 LINE L1 -784 5363 5318 586 222 93 49 chr6 137862364 137862729 -44552513 - L1ME2 LINE L1 -1124 5005 4577 1384 119 34 75 chr6 137862745 137863040 -44552202 + L1MA8 LINE L1 5987 6269 -22 433 264 151 12 chr6 137863077 137863335 -44551907 - L1ME2 LINE L1 -1578 4551 4258 3019 285 98 9 chr6 137866320 137867774 -44547468 - L1ME2 LINE L1 -1854 4275 2693 732 255 95 37 chr6 137867781 137868330 -44546912 - L1ME2 LINE L1 -3594 2535 1998 4347 111 55 1 chr6 137868345 137869019 -44546223 - L1PA15 LINE L1 -13 6152 5443 744 278 91 41 chr6 137869055 137869540 -44545702 - L1ME2 LINE L1 -4451 1859 1351 541 240 9 95 chr6 137869569 137869790 -44545452 + MER58C DNA MER1_type 12 213 -2 295 270 78 0 chr6 137869802 137869917 -44545325 - L1ME2 LINE L1 -4846 1283 1160 1731 173 3 0 chr6 137870160 137870473 -44544769 + AluSx SINE Alu 1 314 0 700 261 61 19 chr6 137870569 137870879 -44544363 - L1ME2 LINE L1 -5112 1007 685 660 165 43 0 chr6 137870886 137871001 -44544241 - Tigger7 DNA MER2_type 0 2587 2468 * 1490 194 8 11 chr6 137870982 137871250 -44543992 - Tigger7 DNA MER2_type -466 267 1 236 299 0 41 chr6 137872106 137872203 -44543039 + L1MC5 LINE L1 7808 7900 -61 253 288 58 39 chr6 137873596 137873801 -44541441 - L1ME4a LINE L1 -207 5914 5706 42491 33 22 3 chr6 137873969 137880007 -44535235 - L1PA2 LINE L1 0 6155 1 25 0 0 0 chr6 137881168 137881193 -44534049 + AT_rich Low_complexity Low_complexity 1 25 0 267 31 0 0 chr6 137881293 137881325 -44533917 + (TG)n Simple_repeat Simple_repeat 2 33 0 273 57 0 0 chr6 137881631 137881666 -44533576 + (CCTA)n Simple_repeat Simple_repeat 1 35 0 281 309 0 0 chr6 137881680 137881761 -44533481 - L1ME2 LINE L1 -6035 84 4 228 306 72 38 chr6 137881820 137882029 -44533213 - L1 LINE L1 -2192 3954 3739 627 286 5 38 chr6 137882057 137882242 -44533000 + MIR SINE MIR 63 241 -21 1978 81 0 0 chr6 137882399 137882660 -44532582 + L1PA7 LINE L1 5892 6152 -2 357 255 105 92 chr6 137882709 137883109 -44532133 - L1 LINE L1 -2946 3200 2796 22 56 0 0 chr6 137883422 137883458 -44531784 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 137885497 137885519 -44529723 + AT_rich Low_complexity Low_complexity 1 22 0 424 267 84 82 chr6 137887493 137887958 -44527284 + L1MC/D LINE L1 58 523 -5596 438 277 92 43 chr6 137888326 137888608 -44526634 + L1MC/D LINE L1 895 1190 -4929 330 321 56 12 chr6 137888820 137888982 -44526260 + L1MC/D LINE L1 4250 4418 -1711 266 354 8 0 chr6 137889105 137889232 -44526010 + L1MC/D LINE L1 5532 5659 -2132 27 0 0 0 chr6 137889478 137889505 -44525737 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 137889633 137889655 -44525587 + AT_rich Low_complexity Low_complexity 1 22 0 196 216 78 0 chr6 137890280 137890331 -44524911 + L2 LINE L2 2779 2833 -481 1235 221 121 60 chr6 137891218 137891652 -44523590 + MER31B LTR ERV1 7 661 0 445 225 107 43 chr6 137892331 137892518 -44522724 + MER106A DNA MER1_type 30 228 -8 23 0 0 0 chr6 137892961 137892984 -44522258 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr6 137893014 137893059 -44522183 + AT_rich Low_complexity Low_complexity 1 45 0 189 0 0 0 chr6 137893296 137893317 -44521925 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1468 157 0 0 chr6 137894448 137894684 -44520558 - MER46A DNA MER2_type 0 236 1 201 320 17 128 chr6 137894808 137894980 -44520262 + L2 LINE L2 3002 3154 -118 307 244 102 91 chr6 137897843 137898040 -44517202 - L2 LINE L2 -426 2888 2690 5504 113 23 9 chr6 137903669 137904529 -44510713 + MER4D LTR ERV1 1 872 0 449 363 31 18 chr6 137904794 137905017 -44510225 + L3 LINE CR1 825 1050 -527 41 0 0 0 chr6 137905032 137905073 -44510169 + AT_rich Low_complexity Low_complexity 1 41 0 1549 285 78 46 chr6 137905290 137906562 -44508680 + L1MC4a LINE L1 3115 4427 -1719 1950 131 7 0 chr6 137906609 137906891 -44508351 + AluSx SINE Alu 5 288 -24 288 261 0 22 chr6 137906924 137907016 -44508226 + L1MC4 LINE L1 6614 6703 -1339 242 300 0 22 chr6 137907016 137907106 -44508136 + L1MC4 LINE L1 6616 6703 -1339 248 212 0 101 chr6 137907116 137907215 -44508027 - L1MC4 LINE L1 -1339 6703 6615 290 233 47 0 chr6 137907250 137907336 -44507906 - L1MC4 LINE L1 -1339 6703 6614 374 205 0 26 chr6 137907383 137907461 -44507781 + MLT1A1 LTR MaLR 72 147 -218 355 329 44 24 chr6 137907486 137907735 -44507507 + L1MC4a LINE L1 4738 4991 -1155 2089 268 82 35 chr6 137907803 137908627 -44506615 + L1MEc LINE L1 246 1108 -5499 312 236 22 11 chr6 137908627 137908716 -44506526 + L1MEc LINE L1 1601 1690 -4917 2384 100 0 0 chr6 137908716 137909026 -44506216 + AluSg SINE Alu 1 310 0 1675 243 3 6 chr6 137909090 137909444 -44505798 + MLT1A1 LTR MaLR 1 353 -12 554 314 11 0 chr6 137909524 137909750 -44505492 + L1MEc LINE L1 1596 2012 -4595 410 94 0 222 chr6 137910315 137910432 -44504810 + MLT1B LTR MaLR 202 292 -98 324 256 83 16 chr6 137910579 137910700 -44504542 + MIR SINE MIR 47 175 -87 1389 146 23 107 chr6 137911229 137911538 -44503704 + MLT1B LTR MaLR 108 390 0 916 286 106 37 chr6 137911671 137911916 -44503326 + L1MC4a LINE L1 5326 5553 -2255 2158 118 0 16 chr6 137911916 137912229 -44503013 + AluY SINE Alu 1 308 -3 916 286 106 37 chr6 137912229 137912302 -44502940 + L1MC4a LINE L1 5553 5619 -2189 360 0 0 0 chr6 137912302 137912342 -44502900 + (CA)n Simple_repeat Simple_repeat 2 41 0 916 286 106 37 chr6 137912342 137912539 -44502703 + L1MC4a LINE L1 5619 5878 -1930 1957 150 10 0 chr6 137912551 137912858 -44502384 + AluSx SINE Alu 1 310 -2 720 64 0 0 chr6 137912881 137912975 -44502267 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 1049 266 146 19 chr6 137914562 137914987 -44500255 - MER110 LTR ERV1 0 491 13 592 274 38 0 chr6 137915032 137915189 -44500053 + MIR SINE MIR 100 262 0 841 185 21 11 chr6 137915267 137915649 -44499593 + GA-rich Low_complexity Low_complexity 1 386 0 231 321 75 80 chr6 137916469 137916529 -44498713 - MER5A DNA MER1_type -2 187 128 2479 59 0 3 chr6 137916529 137916833 -44498409 + AluY SINE Alu 1 303 -8 231 321 75 80 chr6 137916833 137916959 -44498283 - MER5A DNA MER1_type -61 128 2 191 36 36 0 chr6 137917206 137917234 -44498008 + (CA)n Simple_repeat Simple_repeat 1 29 0 402 315 40 25 chr6 137918121 137918321 -44496921 + L2 LINE L2 2567 2769 -545 288 354 82 68 chr6 137918403 137918756 -44496486 + L2 LINE L2 2914 3271 -1 199 261 22 76 chr6 137918916 137919008 -44496234 + MIR3 SINE MIR 111 197 -11 303 336 9 9 chr6 137919291 137919404 -44495838 - MIR SINE MIR -75 133 21 3744 184 33 10 chr6 137919872 137920843 -44494399 - L1MC2 LINE L1 -377 5967 4978 1091 228 17 67 chr6 137920881 137921301 -44493941 - MSTB2 LTR MaLR 0 457 1 2254 238 28 8 chr6 137921306 137921916 -44493326 - L1MC2 LINE L1 -1212 4934 4313 30 0 0 0 chr6 137922385 137922415 -44492827 + AT_rich Low_complexity Low_complexity 1 30 0 294 295 57 9 chr6 137922452 137922557 -44492685 + MIR SINE MIR 71 180 -82 22 0 0 0 chr6 137923145 137923167 -44492075 + AT_rich Low_complexity Low_complexity 1 22 0 2319 96 0 0 chr6 137923716 137924009 -44491233 + AluSc SINE Alu 1 293 -16 6728 23 12 1 chr6 137925972 137926807 -44488435 + L1PA3 LINE L1 5328 6171 0 600 325 50 6 chr6 137926873 137927190 -44488052 + Charlie7 DNA MER1_type 214 544 -2068 * 1491 263 36 49 chr6 137927187 137927688 -44487554 + Charlie7 DNA MER1_type 1742 2235 -377 2291 96 0 10 chr6 137927688 137928000 -44487242 + AluSx SINE Alu 1 309 -3 1491 263 36 49 chr6 137928000 137928107 -44487135 + Charlie7 DNA MER1_type 2235 2342 -270 751 281 132 8 chr6 137928363 137928733 -44486509 + L1ME3A LINE L1 5434 5849 -321 369 216 186 10 chr6 137929063 137929160 -44486082 + MIR SINE MIR 122 235 -27 41671 61 4 1 chr6 137929160 137935263 -44479979 - L1PA5 LINE L1 -3 6151 27 324 170 205 23 chr6 137935263 137935434 -44479808 + Charlie7 DNA MER1_type 2323 2524 -88 3269 269 114 24 chr6 137935927 137937248 -44477994 - L2 LINE L2 -101 3212 1782 1012 313 101 5 chr6 137937251 137937628 -44477614 - L2 LINE L2 -1820 1494 1082 295 342 8 8 chr6 137938186 137938303 -44476939 - MIR SINE MIR -13 249 133 26 30 0 0 chr6 137939344 137939377 -44475865 + AT_rich Low_complexity Low_complexity 1 33 0 2019 211 50 81 chr6 137939447 137940093 -44475149 + MLT1E2 LTR MaLR 1 626 0 2310 156 18 38 chr6 137940098 137940541 -44474701 - Tigger2a DNA MER2_type 0 434 1 185 91 0 30 chr6 137942593 137942626 -44472616 + (TTC)n Simple_repeat Simple_repeat 2 33 0 302 315 120 5 chr6 137943553 137943737 -44471505 - L1MC4a LINE L1 -1836 5972 5768 679 295 15 63 chr6 137943773 137944041 -44471201 + MIR SINE MIR 8 262 0 834 281 46 61 chr6 137944073 137944141 -44471101 - L1MC4a LINE L1 -2049 5759 5691 2071 99 0 0 chr6 137944141 137944429 -44470813 - AluSg1 SINE Alu 0 305 18 834 281 46 61 chr6 137944429 137944687 -44470555 - L1MC4a LINE L1 -2117 5691 5437 1976 116 3 52 chr6 137944689 137944999 -44470243 + AluSx SINE Alu 1 295 -17 213 266 85 32 chr6 137945188 137945282 -44469960 - MIR SINE MIR -89 173 75 180 0 0 0 chr6 137945369 137945389 -44469853 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 222 37 0 0 chr6 137945388 137945415 -44469827 + (GA)n Simple_repeat Simple_repeat 1 27 0 347 264 64 18 chr6 137945495 137945605 -44469637 + MIR SINE MIR 78 192 -70 720 262 77 32 chr6 137945881 137946129 -44469113 - MIR SINE MIR 0 262 4 466 278 97 14 chr6 137946347 137946491 -44468751 - L3 LINE CR1 -38 1539 1384 712 221 15 0 chr6 137946491 137946622 -44468620 - FLAM_A SINE Alu 0 133 1 1929 182 51 28 chr6 137946649 137947183 -44468059 - MLT2A2 LTR ERVL -9 545 1 735 313 69 18 chr6 137947193 137947528 -44467714 - L3 LINE CR1 -237 1340 989 468 291 55 45 chr6 137948246 137948466 -44466776 - MIR SINE MIR -9 253 32 254 223 21 64 chr6 137950364 137950458 -44464784 + L3 LINE CR1 572 661 -916 281 155 17 0 chr6 137950649 137950707 -44464535 + GA-rich Low_complexity Low_complexity 2 60 0 201 282 0 26 chr6 137950729 137950807 -44464435 + GA-rich Low_complexity Low_complexity 4 79 0 1506 239 49 8 chr6 137952710 137953099 -44462143 - MER119 DNA MER1_type 0 583 179 818 244 17 6 chr6 137953147 137953319 -44461923 - MER119 DNA MER1_type -404 179 6 1744 186 0 3 chr6 137953974 137954269 -44460973 + AluSx SINE Alu 3 296 -16 2060 142 40 0 chr6 137954780 137955104 -44460138 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr6 137956380 137956403 -44458839 + AT_rich Low_complexity Low_complexity 1 23 0 504 59 0 0 chr6 137957796 137957864 -44457378 + (TC)n Simple_repeat Simple_repeat 2 69 0 225 0 0 0 chr6 137957863 137957888 -44457354 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2055 131 0 6 chr6 137958433 137958746 -44456496 + AluSx SINE Alu 1 311 -1 372 320 67 22 chr6 137959580 137959758 -44455484 + MIR SINE MIR 5 190 -72 414 344 37 25 chr6 137961057 137961284 -44453958 + MIR SINE MIR 4 232 -30 469 243 161 71 chr6 137961692 137961908 -44453334 + MLT1I LTR MaLR 5 200 -209 2434 90 0 0 chr6 137961908 137962218 -44453024 + AluSg SINE Alu 1 310 0 469 243 161 71 chr6 137962218 137962367 -44452875 + MLT1I LTR MaLR 200 403 -6 211 200 0 0 chr6 137962771 137962811 -44452431 - L2 LINE L2 0 3272 3233 187 276 121 69 chr6 137962815 137962931 -44452311 + MIR SINE MIR 110 231 -31 392 306 39 1 chr6 137962944 137963082 -44452160 + MIR SINE MIR 4 148 -68 181 382 69 20 chr6 137963187 137963289 -44451953 - L2 LINE L2 -43 3229 3123 353 21 0 21 chr6 137963538 137963585 -44451657 + (TA)n Simple_repeat Simple_repeat 1 46 0 318 194 0 0 chr6 137964783 137964850 -44450392 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 1096 195 49 2 chr6 137965005 137965427 -44449815 + L1MB5 LINE L1 5607 6128 -46 239 200 0 0 chr6 137965491 137965541 -44449701 + L1MB5 LINE L1 6118 6167 -7 573 328 49 28 chr6 137966438 137966685 -44448557 - MIR SINE MIR -3 259 8 252 200 55 0 chr6 137969871 137969926 -44445316 + MIR SINE MIR 119 176 -86 1514 322 103 61 chr6 137969940 137970529 -44444713 - L2 LINE L2 -1 3312 2749 1924 141 7 20 chr6 137970529 137970828 -44444414 - AluJo SINE Alu -17 295 1 1514 322 103 61 chr6 137970828 137972142 -44443100 - L2 LINE L2 -564 2749 1319 1779 50 0 0 chr6 137972434 137972654 -44442588 + L1PA7 LINE L1 5927 6146 -8 25 0 0 0 chr6 137975842 137975867 -44439375 + AT_rich Low_complexity Low_complexity 1 25 0 330 26 0 0 chr6 137977052 137977091 -44438151 + (CA)n Simple_repeat Simple_repeat 2 40 0 205 309 0 0 chr6 137977805 137977860 -44437382 + (CA)n Simple_repeat Simple_repeat 2 56 0 194 304 217 9 chr6 137977896 137978011 -44437231 + MIR3 SINE MIR 47 185 -23 1021 66 96 0 chr6 137978236 137978372 -44436870 - AluY SINE Alu -8 303 155 297 271 116 39 chr6 137978851 137978980 -44436262 - MIR SINE MIR -7 255 117 697 257 78 9 chr6 137979010 137979228 -44436014 + MIR SINE MIR 30 262 0 1619 145 62 21 chr6 137979459 137979748 -44435494 + MER1B DNA MER1_type 39 339 0 44 75 0 0 chr6 137980653 137980746 -44434496 + AT_rich Low_complexity Low_complexity 1 93 0 24 0 0 0 chr6 137981049 137981073 -44434169 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 137981397 137981425 -44433817 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 137981702 137981724 -44433518 + AT_rich Low_complexity Low_complexity 1 22 0 386 364 0 8 chr6 137982071 137982189 -44433053 - MIR SINE MIR -72 136 20 21 57 0 0 chr6 137982457 137982492 -44432750 + AT_rich Low_complexity Low_complexity 1 35 0 198 209 0 0 chr6 137983687 137983730 -44431512 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 1972 142 0 0 chr6 137984672 137984974 -44430268 + AluSx SINE Alu 1 302 0 21 0 0 0 chr6 137985259 137985280 -44429962 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 137987053 137987081 -44428161 + AT_rich Low_complexity Low_complexity 1 28 0 192 40 0 0 chr6 137987962 137987987 -44427255 + (TG)n Simple_repeat Simple_repeat 2 26 0 269 323 0 0 chr6 137988263 137988328 -44426914 - L2 LINE L2 -5 3308 3244 437 165 10 72 chr6 137989023 137989120 -44426122 - MER103 DNA DNA -69 97 7 424 323 21 74 chr6 137990776 137990965 -44424277 + MER91A DNA MER1_type 4 182 -14 308 272 64 75 chr6 137991055 137991228 -44424014 + L2 LINE L2 2921 3091 -181 231 114 0 0 chr6 137991584 137991619 -44423623 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 503 92 27 65 chr6 137993072 137993257 -44421985 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 23 0 0 0 chr6 137993257 137993280 -44421962 + AT_rich Low_complexity Low_complexity 1 23 0 208 122 0 49 chr6 137993289 137993330 -44421912 + (GAAA)n Simple_repeat Simple_repeat 3 41 0 851 144 11 11 chr6 137993330 137993504 -44421738 + GA-rich Low_complexity Low_complexity 4 177 0 311 284 12 0 chr6 137995642 137995723 -44419519 + MIR SINE MIR 58 139 -123 205 164 22 82 chr6 137995947 137996081 -44419161 + (TTA)n Simple_repeat Simple_repeat 3 128 0 186 43 0 0 chr6 137996826 137996849 -44418393 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 180 353 29 0 chr6 137997643 137997711 -44417531 + MIR SINE MIR 84 153 -109 189 209 0 47 chr6 137997772 137997815 -44417427 + MIR SINE MIR 151 191 -71 2138 101 0 3 chr6 137998418 137998714 -44416528 + AluSg SINE Alu 1 295 -15 217 200 0 0 chr6 138000010 138000045 -44415197 + polypurine Low_complexity Low_complexity 1 35 0 356 306 105 8 chr6 138000201 138000325 -44414917 + MIR SINE MIR 2 137 -125 234 298 123 80 chr6 138000408 138000656 -44414586 - LTR16B LTR ERVL -96 368 103 1718 183 40 14 chr6 138000656 138001006 -44414236 - MLT1A1 LTR MaLR -2 363 5 234 298 123 80 chr6 138001006 138001059 -44414183 - LTR16B LTR ERVL -361 103 54 810 258 7 72 chr6 138001413 138001692 -44413550 + MIR SINE MIR 2 262 0 323 253 25 0 chr6 138002107 138002186 -44413056 + L1MC4 LINE L1 6619 6699 -1343 471 309 19 40 chr6 138002268 138002640 -44412602 - L1ME4a LINE L1 -122 5999 5636 217 259 0 0 chr6 138002774 138002828 -44412414 + A-rich Low_complexity Low_complexity 4 57 0 545 316 70 55 chr6 138005521 138005777 -44409465 + MIR SINE MIR 3 262 0 245 288 0 0 chr6 138006057 138006116 -44409126 - MIR SINE MIR -3 259 201 298 344 51 40 chr6 138007744 138008020 -44407222 - L2 LINE L2 -669 2645 2367 863 246 73 60 chr6 138008047 138008512 -44406730 - L1ME1 LINE L1 -3 6232 5718 2841 6 0 0 chr6 138009055 138009366 -44405876 - AluY SINE Alu 0 311 1 294 207 195 24 chr6 138009758 138009927 -44405315 - LTR50 LTR ERVL -25 770 573 2382 68 0 0 chr6 138010292 138010588 -44404654 - AluY SINE Alu -15 296 1 424 259 74 0 chr6 138010647 138010782 -44404460 - LTR41 LTR ERVL -628 145 1 400 333 62 62 chr6 138011092 138011477 -44403765 + HAL1b LINE L1 70 454 -894 258 272 9 88 chr6 138011832 138011946 -44403296 + L2 LINE L2 3204 3308 -5 24 53 0 0 chr6 138013100 138013138 -44402104 + AT_rich Low_complexity Low_complexity 1 38 0 2512 46 3 0 chr6 138013286 138013591 -44401651 + AluY SINE Alu 1 306 -5 4696 256 63 5 chr6 138013841 138015327 -44399915 - L1ME1 LINE L1 -986 5229 3658 660 246 57 4 chr6 138015331 138015579 -44399663 + L1M4 LINE L1 3147 3407 -2739 * 1987 241 84 76 chr6 138015574 138015621 -44399621 - L1ME1 LINE L1 -3021 3194 3149 2410 65 3 0 chr6 138015621 138015928 -44399314 - AluY SINE Alu -3 308 1 1987 241 84 76 chr6 138015928 138016691 -44398551 - L1ME1 LINE L1 -3066 3149 2393 1627 185 49 0 chr6 138016691 138016977 -44398265 - AluJb SINE Alu -12 300 1 1987 241 84 76 chr6 138016977 138017756 -44397486 - L1ME1 LINE L1 -3822 2393 1598 2150 271 76 40 chr6 138017827 138018932 -44396310 - L1ME1 LINE L1 -5024 1372 228 212 298 58 25 chr6 138019083 138019204 -44396038 - L2 LINE L2 -1291 2023 1899 1717 161 115 5 chr6 138020030 138020414 -44394828 - MSTB LTR MaLR 0 426 1 2132 106 0 0 chr6 138021280 138021591 -44393651 - AluY SINE Alu 0 311 1 222 344 30 23 chr6 138023523 138023654 -44391588 - L2 LINE L2 -872 2442 2311 188 363 164 28 chr6 138023889 138024286 -44390956 - L2 LINE L2 -1267 2047 1597 27 49 0 0 chr6 138024792 138024833 -44390409 + AT_rich Low_complexity Low_complexity 1 41 0 483 138 9 37 chr6 138026757 138026830 -44388412 + L1MA7 LINE L1 6186 6257 -34 2368 130 49 44 chr6 138026830 138027061 -44388181 - Tigger2a DNA MER2_type -2275 433 198 2141 134 0 0 chr6 138027061 138027392 -44387850 + AluSx SINE Alu 1 312 0 2368 130 49 44 chr6 138027392 138027590 -44387652 - Tigger2a DNA MER2_type -2510 198 2 483 138 9 37 chr6 138027590 138027625 -44387617 + L1MA7 LINE L1 6257 6291 0 250 328 15 30 chr6 138028226 138028360 -44386882 - MARNA DNA Mariner -41 545 414 182 328 17 0 chr6 138028674 138028732 -44386510 + MIR SINE MIR 175 233 -29 217 251 312 50 chr6 138031391 138031590 -44383652 - MIR SINE MIR -6 256 6 2377 119 0 14 chr6 138031591 138031944 -44383298 - MER7A DNA MER2_type 0 346 1 270 310 115 9 chr6 138031949 138032062 -44383180 - MIR SINE MIR -114 148 24 407 255 92 0 chr6 138032732 138032830 -44382412 - MIR3 SINE MIR -9 199 93 2072 135 0 0 chr6 138032917 138033214 -44382028 - AluSx SINE Alu -15 297 1 433 84 67 0 chr6 138033764 138033883 -44381359 + (TA)n Simple_repeat Simple_repeat 1 127 0 23 54 0 0 chr6 138034072 138034109 -44381133 + AT_rich Low_complexity Low_complexity 1 37 0 308 236 274 25 chr6 138035760 138036078 -44379164 - L1ME4a LINE L1 -1 6120 5724 1047 272 66 55 chr6 138036100 138036435 -44378807 + L2 LINE L2 66 409 -2905 2018 130 7 0 chr6 138036435 138036736 -44378506 - AluSx SINE Alu -9 303 1 1047 272 66 55 chr6 138036736 138036838 -44378404 + L2 LINE L2 409 508 -2806 3179 129 44 31 chr6 138036847 138037248 -44377994 + MER1A DNA MER1_type 4 415 -2287 223 26 0 53 chr6 138037248 138037286 -44377956 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3179 129 44 31 chr6 138037286 138037403 -44377839 + MER1A DNA MER1_type 415 529 0 2031 297 153 61 chr6 138037403 138037944 -44377298 + L2 LINE L2 514 1004 -2310 2209 82 0 26 chr6 138037944 138038247 -44376995 - AluY SINE Alu -16 295 1 2031 297 153 61 chr6 138038247 138039256 -44375986 + L2 LINE L2 1004 2207 -1107 2150 125 3 0 chr6 138040030 138040333 -44374909 - AluSx SINE Alu -8 304 1 264 378 0 0 chr6 138040445 138040572 -44374670 - L1M4 LINE L1 -2061 4085 3959 217 315 0 90 chr6 138041202 138041291 -44373951 - MIR SINE MIR -68 194 114 904 272 34 4 chr6 138041366 138041601 -44373641 + MIR SINE MIR 7 248 -14 2014 181 6 3 chr6 138041745 138042109 -44373133 - MLT1A1 LTR MaLR 0 365 1 434 65 16 0 chr6 138042482 138042544 -44372698 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 24 32 0 0 chr6 138042705 138042736 -44372506 + AT_rich Low_complexity Low_complexity 1 31 0 186 335 63 44 chr6 138042843 138043001 -44372241 - MIR SINE MIR -70 192 32 607 165 116 0 chr6 138043323 138043444 -44371798 + AluJo SINE Alu 2 136 -176 407 313 45 6 chr6 138043629 138043808 -44371434 - MIR SINE MIR -30 232 47 834 347 158 30 chr6 138043819 138044818 -44370424 + L3 LINE CR1 445 1571 -6 292 380 88 18 chr6 138045847 138046073 -44369169 - L2 LINE L2 -183 3089 2848 * 1102 354 117 23 chr6 138046057 138046872 -44368370 - L2 LINE L2 -418 2896 1933 2144 121 7 0 chr6 138046872 138047177 -44368065 + AluSc SINE Alu 1 307 -2 1102 354 117 23 chr6 138047177 138047549 -44367693 - L2 LINE L2 -1381 1933 1597 1955 95 22 4 chr6 138047736 138048010 -44367232 + AluSx SINE Alu 34 312 0 183 42 0 0 chr6 138049341 138049365 -44365877 + (TG)n Simple_repeat Simple_repeat 2 25 0 367 339 142 48 chr6 138051159 138051905 -44363337 - L2 LINE L2 -495 2819 2004 3275 144 6 8 chr6 138051972 138052498 -44362744 - LTR45 LTR ERV1 0 525 1 259 270 149 50 chr6 138052736 138052958 -44362284 + MER112 DNA MER1_type 1 244 -16 211 406 0 0 chr6 138053685 138053749 -44361493 + L2 LINE L2 3123 3186 -86 1174 304 79 9 chr6 138053755 138054209 -44361033 - L2 LINE L2 -1 3312 2827 501 262 318 37 chr6 138054252 138054680 -44360562 - L2 LINE L2 -751 2563 2016 246 283 0 0 chr6 138055148 138055208 -44360034 + (TG)n Simple_repeat Simple_repeat 1 60 0 28 29 0 0 chr6 138056767 138056802 -44358440 + AT_rich Low_complexity Low_complexity 1 35 0 237 306 65 0 chr6 138108745 138108807 -44306435 + MER91A DNA MER1_type 121 186 -10 323 143 55 11 chr6 138108988 138109079 -44306163 + GA-rich Low_complexity Low_complexity 1 95 0 213 121 0 0 chr6 138110002 138110035 -44305207 + (TG)n Simple_repeat Simple_repeat 2 34 0 5045 91 10 27 chr6 138110354 138110425 -44304817 - L1PA8 LINE L1 -52 6120 6049 2187 121 7 0 chr6 138110425 138110732 -44304510 - AluSx SINE Alu -3 309 1 5045 91 10 27 chr6 138110732 138111444 -44303798 - L1PA8 LINE L1 -123 6049 5350 742 109 0 0 chr6 138111444 138111551 -44303691 + L1PA8 LINE L1 6062 6171 -1 11104 88 24 2 chr6 138112004 138113565 -44301677 - HERVL LTR ERVL -1034 4620 3026 504 59 0 0 chr6 138113573 138113641 -44301601 - MLT2A2 LTR ERVL -385 68 1 245 146 73 0 chr6 138114269 138114324 -44300918 - MLT2B1 LTR ERVL 0 520 462 409 135 39 10 chr6 138114330 138114434 -44300808 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 1287 185 194 39 chr6 138114434 138114867 -44300375 - MLT2B1 LTR ERVL -20 500 1 1642 149 119 30 chr6 138115785 138116155 -44299087 - MLT2D LTR ERVL -11 403 1 298 243 39 48 chr6 138116313 138116416 -44298826 - MLT1J2 LTR MaLR -6 444 343 586 296 98 32 chr6 138116777 138117555 -44297687 + L1M4 LINE L1 2260 3088 -3058 493 275 146 27 chr6 138117560 138118087 -44297155 + L1M4 LINE L1 3122 3711 -2435 377 319 93 23 chr6 138118456 138118713 -44296529 - HAL1 LINE L1 -57 2450 2176 229 302 31 31 chr6 138118792 138118921 -44296321 - HAL1b LINE L1 -474 874 746 1943 150 0 0 chr6 138119254 138119534 -44295708 + AluJb SINE Alu 1 280 -32 1332 217 34 26 chr6 138119634 138119816 -44295426 - MLT1A1 LTR MaLR -96 269 83 1594 184 121 40 chr6 138119816 138120212 -44295030 - MSTA LTR MaLR 0 428 1 1332 217 34 26 chr6 138120212 138120296 -44294946 - MLT1A1 LTR MaLR -282 83 1 969 189 5 11 chr6 138120427 138120617 -44294625 - MER5A DNA MER1_type 0 189 1 366 120 40 0 chr6 138122055 138122130 -44293112 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 941 184 18 0 chr6 138122583 138122746 -44292496 + MER5A DNA MER1_type 24 189 0 23 0 0 0 chr6 138123117 138123140 -44292102 + AT_rich Low_complexity Low_complexity 1 23 0 380 327 24 12 chr6 138123807 138123975 -44291267 + MIR3 SINE MIR 32 201 -7 22 0 0 0 chr6 138124696 138124718 -44290524 + AT_rich Low_complexity Low_complexity 1 22 0 286 236 42 62 chr6 138125326 138125470 -44289772 - MER5A DNA MER1_type -28 161 21 775 242 6 0 chr6 138125696 138125861 -44289381 + MER5A DNA MER1_type 22 187 -2 354 358 56 6 chr6 138125972 138126151 -44289091 - L2 LINE L2 -188 3084 2897 1317 0 59 7 chr6 138126732 138126884 -44288358 - AluYa5 SINE Alu -151 160 1 6510 186 76 38 chr6 138127264 138128726 -44286516 - MER52A LTR ERV1 0 1755 72 21 57 0 0 chr6 138129145 138129180 -44286062 + AT_rich Low_complexity Low_complexity 1 35 0 1063 111 0 6 chr6 138129510 138129681 -44285561 - L1MA8 LINE L1 -2 6289 6120 312 289 121 0 chr6 138130634 138130783 -44284459 - L1ME4a LINE L1 0 6121 5955 24 53 0 0 chr6 138130853 138130891 -44284351 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr6 138131077 138131117 -44284125 + AT_rich Low_complexity Low_complexity 1 40 0 2631 252 67 20 chr6 138133077 138134034 -44281208 + L1ME1 LINE L1 3214 4215 -1931 728 174 8 0 chr6 138134061 138134182 -44281060 + FLAM_C SINE Alu 11 132 -11 811 257 142 8 chr6 138134217 138134583 -44280659 + L1ME1 LINE L1 4254 4668 -1478 1504 135 13 4 chr6 138135116 138135345 -44279897 + AluJb SINE Alu 82 312 0 2065 66 10 82 chr6 138135987 138136290 -44278952 + AluY SINE Alu 28 308 -3 2297 113 6 0 chr6 138136789 138137100 -44278142 - AluSq SINE Alu 0 313 1 221 301 252 0 chr6 138137107 138137230 -44278012 - L2 LINE L2 0 3313 3160 196 184 82 0 chr6 138137584 138137633 -44277609 - MIR SINE MIR -1 261 209 438 270 164 13 chr6 138137639 138137791 -44277451 - MER5A DNA MER1_type -6 183 9 286 301 19 19 chr6 138137816 138137919 -44277323 - MIR SINE MIR -151 111 9 190 252 245 34 chr6 138137930 138138077 -44277165 - L2 LINE L2 -217 3096 2919 1984 197 14 3 chr6 138138293 138138649 -44276593 - MLT1A1 LTR MaLR 0 365 6 2261 106 0 3 chr6 138140252 138140554 -44274688 + AluSx SINE Alu 1 301 -11 241 368 93 14 chr6 138141625 138141824 -44273418 + MIR3 SINE MIR 6 216 -46 233 255 29 49 chr6 138142802 138142904 -44272338 - MARNA DNA Mariner -141 445 346 314 256 105 0 chr6 138143489 138143575 -44271667 + L2 LINE L2 3219 3313 0 303 42 83 21 chr6 138145051 138145099 -44270143 - MLT2A2 LTR ERVL 0 453 403 2152 219 56 25 chr6 138145202 138146143 -44269099 + L1ME1 LINE L1 4732 5695 -471 1019 250 81 17 chr6 138146147 138146507 -44268735 + L1ME1 LINE L1 5780 6162 -4 2628 113 10 12 chr6 138146655 138147070 -44268172 - L1PA13 LINE L1 0 6163 5750 553 301 125 11 chr6 138148662 138148934 -44266308 + L2 LINE L2 2010 2312 -1002 310 228 0 0 chr6 138149379 138149436 -44265806 + AluJ/FLAM SINE Alu 1 57 -245 434 200 0 0 chr6 138149537 138149612 -44265630 + AluJ/FRAM SINE Alu 225 299 -13 2079 112 35 0 chr6 138149621 138149906 -44265336 - AluSx SINE Alu -17 295 1 298 315 63 63 chr6 138150079 138150349 -44264893 + L2 LINE L2 2816 3085 -187 817 154 0 80 chr6 138151844 138152006 -44263236 + AluSg/x SINE Alu 137 285 -27 44 0 0 0 chr6 138152006 138152050 -44263192 + AT_rich Low_complexity Low_complexity 1 44 0 2163 130 0 0 chr6 138152277 138152576 -44262666 + AluSx SINE Alu 1 299 -13 467 222 10 10 chr6 138152702 138152801 -44262441 - Tigger2 DNA MER2_type -10 2708 2610 25 0 0 0 chr6 138153074 138153099 -44262143 + AT_rich Low_complexity Low_complexity 1 25 0 245 303 124 0 chr6 138153749 138153838 -44261404 - MER102a DNA MER1_type -10 320 221 22 0 0 0 chr6 138154732 138154754 -44260488 + AT_rich Low_complexity Low_complexity 1 22 0 306 332 119 19 chr6 138157715 138158034 -44257208 - L1MC/D LINE L1 -2143 5665 5315 335 308 0 0 chr6 138158035 138158139 -44257103 - U6 snRNA snRNA 0 107 4 645 267 15 84 chr6 138158310 138158512 -44256730 + MIR SINE MIR 4 191 -71 26 0 0 0 chr6 138159703 138159729 -44255513 + AT_rich Low_complexity Low_complexity 1 26 0 1772 158 32 35 chr6 138160191 138160533 -44254709 + MER2 DNA MER2_type 4 344 0 237 33 0 0 chr6 138160986 138161016 -44254226 + (TA)n Simple_repeat Simple_repeat 2 31 0 24 0 0 0 chr6 138162499 138162523 -44252719 + AT_rich Low_complexity Low_complexity 1 24 0 1840 164 0 13 chr6 138162652 138162950 -44252292 + AluJo SINE Alu 1 294 -18 21 36 0 0 chr6 138163295 138163323 -44251919 + AT_rich Low_complexity Low_complexity 1 28 0 1201 85 0 23 chr6 138163478 138163654 -44251588 - L1PA13 LINE L1 -6 6157 5986 21 36 0 0 chr6 138163743 138163771 -44251471 + AT_rich Low_complexity Low_complexity 1 28 0 711 187 8 0 chr6 138164257 138164380 -44250862 + FLAM_C SINE Alu 1 124 -19 325 308 108 59 chr6 138164586 138165047 -44250195 + L1M4 LINE L1 2786 3269 -2877 290 181 12 84 chr6 138165931 138166014 -44249228 + MER116 DNA Mariner 4 80 0 604 75 0 0 chr6 138167456 138167536 -44247706 + (GGGGA)n Simple_repeat Simple_repeat 5 84 0 1536 201 16 16 chr6 138168961 138169269 -44245973 + AluJb SINE Alu 1 308 -4 1311 198 92 48 chr6 138170170 138170549 -44244693 - MSTD LTR MaLR 0 396 1 2340 89 0 10 chr6 138170755 138171059 -44244183 - AluSc SINE Alu -8 301 1 441 0 0 0 chr6 138171245 138171294 -44243948 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 2084 107 0 14 chr6 138171296 138171576 -44243666 - AluSc SINE Alu -33 276 1 46 19 0 0 chr6 138174923 138174976 -44240266 + AT_rich Low_complexity Low_complexity 1 53 0 1074 167 6 0 chr6 138176042 138176210 -44239032 + FAM SINE Alu 1 169 -6 464 296 75 21 chr6 138178358 138178544 -44236698 + MIR SINE MIR 6 201 -61 814 290 21 13 chr6 138178560 138178642 -44236600 - MIR SINE MIR -21 241 161 1750 194 19 25 chr6 138178642 138179009 -44236233 - MLT1A1 LTR MaLR 0 365 1 814 290 21 13 chr6 138179009 138179164 -44236078 - MIR SINE MIR -101 161 2 551 105 32 53 chr6 138179674 138179769 -44235473 + Tigger3(Golem) DNA MER2_type 2852 2944 -85 1915 151 33 18 chr6 138180169 138180501 -44234741 - MER7A DNA MER2_type 0 346 12 307 348 171 0 chr6 138180935 138181093 -44234149 - MIR SINE MIR -7 255 71 817 240 77 6 chr6 138181609 138181792 -44233450 + MER69 DNA AcHobo 1 196 -1030 244 235 129 24 chr6 138181820 138181905 -44233337 + MER69 DNA AcHobo 2428 2521 -5 267 31 0 0 chr6 138183906 138183938 -44231304 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 180 152 0 0 chr6 138184685 138184718 -44230524 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 251 211 18 0 chr6 138184957 138185014 -44230228 - L2 LINE L2 -98 3215 3158 186 309 24 0 chr6 138185263 138185347 -44229895 - L2 LINE L2 -706 2608 2523 210 271 135 31 chr6 138187292 138187388 -44227854 - L2 LINE L2 -36 3277 3172 474 209 30 30 chr6 138187708 138187842 -44227400 - MER103 DNA DNA -30 136 3 246 314 21 78 chr6 138187938 138188129 -44227113 - L2 LINE L2 -463 2851 2672 2149 182 0 19 chr6 138188262 138188690 -44226552 + L1PB4 LINE L1 5737 6156 0 21 0 0 0 chr6 138189527 138189548 -44225694 + AT_rich Low_complexity Low_complexity 1 21 0 241 325 193 0 chr6 138189921 138190004 -44225238 - L2 LINE L2 -17 3255 3157 286 378 97 11 chr6 138190256 138190523 -44224719 - L2 LINE L2 -459 2855 2566 2027 226 77 53 chr6 138190530 138191269 -44223973 + L1ME1 LINE L1 5406 6162 -4 293 359 129 24 chr6 138191276 138191912 -44223330 - L2 LINE L2 -757 2557 1855 21 36 0 0 chr6 138192867 138192895 -44222347 + AT_rich Low_complexity Low_complexity 1 28 0 562 228 6 30 chr6 138193192 138193359 -44221883 - MER103 DNA DNA -2 164 2 324 311 0 0 chr6 138195680 138195754 -44219488 - L2 LINE L2 -3 3269 3196 890 211 10 5 chr6 138198310 138198518 -44216724 - MER3 DNA MER1_type 0 209 1 351 266 136 58 chr6 138198553 138198707 -44216535 - MIR SINE MIR -2 260 95 1561 144 23 59 chr6 138198954 138199259 -44215983 - AluJo SINE Alu -18 294 1 243 61 0 0 chr6 138201711 138201744 -44213498 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1124 207 171 12 chr6 138203190 138203436 -44211806 + AluJb SINE Alu 2 286 -16 407 269 165 36 chr6 138203879 138203944 -44211298 + L1ME3 LINE L1 3788 3843 -2303 2201 113 0 25 chr6 138203944 138204262 -44210980 + AluSg SINE Alu 1 310 0 407 269 165 36 chr6 138204262 138204530 -44210712 + L1ME3 LINE L1 3843 4164 -1982 595 261 121 57 chr6 138204563 138205322 -44209920 + L1ME3 LINE L1 4412 5219 -927 1094 286 20 11 chr6 138205442 138205799 -44209443 + L1ME3 LINE L1 5497 5856 -306 21 0 0 0 chr6 138208862 138208883 -44206359 + AT_rich Low_complexity Low_complexity 1 21 0 2146 114 0 7 chr6 138209193 138209499 -44205743 + AluSg SINE Alu 1 304 -6 266 265 0 15 chr6 138210465 138210533 -44204709 + CT-rich Low_complexity Low_complexity 5 71 0 202 158 26 0 chr6 138211160 138211198 -44204044 + L2 LINE L2 3230 3268 -4 439 261 34 18 chr6 138211398 138211559 -44203683 - MIR SINE MIR -62 146 5 235 231 83 0 chr6 138213828 138213936 -44201306 - L1ME4a LINE L1 -6 6115 5999 2199 102 3 6 chr6 138214037 138214350 -44200892 + AluSx SINE Alu 1 312 0 390 279 45 0 chr6 138214451 138214562 -44200680 + MIR SINE MIR 5 120 -142 652 151 0 0 chr6 138214562 138214655 -44200587 - 5S rRNA rRNA -28 93 1 301 309 98 0 chr6 138214655 138214778 -44200464 + MIR SINE MIR 116 250 -12 329 344 85 16 chr6 138214830 138215019 -44200223 - MIR SINE MIR -48 214 13 497 292 46 28 chr6 138215067 138215283 -44199959 - L1ME4a LINE L1 -371 5750 5531 224 256 116 47 chr6 138215419 138215505 -44199737 + L3 LINE CR1 1397 1488 -89 204 265 69 49 chr6 138215510 138215612 -44199630 + MIR SINE MIR 99 202 -60 298 302 130 12 chr6 138215671 138215840 -44199402 - MIR SINE MIR -12 250 62 1036 300 153 32 chr6 138216162 138216816 -44198426 - L3 LINE CR1 -2 1575 843 335 285 113 13 chr6 138217148 138217299 -44197943 - MIR3 SINE MIR -7 201 36 2150 112 3 0 chr6 138217319 138217631 -44197611 - AluSp SINE Alu 0 313 1 216 200 22 0 chr6 138217857 138217902 -44197340 - L2 LINE L2 -1 3312 3267 330 286 64 53 chr6 138217964 138218135 -44197107 + MIR SINE MIR 64 236 -26 1959 126 42 0 chr6 138218414 138218700 -44196542 - AluJb SINE Alu -14 298 1 22 0 0 0 chr6 138220428 138220450 -44194792 + AT_rich Low_complexity Low_complexity 1 22 0 1490 150 6 117 chr6 138220887 138221220 -44194022 - AluJo SINE Alu -6 296 1 21 0 0 0 chr6 138221994 138222015 -44193227 + AT_rich Low_complexity Low_complexity 1 21 0 695 143 9 9 chr6 138223046 138223158 -44192084 - MER45A DNA AcHobo 0 178 67 2170 62 0 78 chr6 138226660 138226997 -44188245 - AluY SINE Alu 0 313 1 391 296 57 61 chr6 138227051 138227236 -44188006 + MIR SINE MIR 22 208 -54 1890 153 3 3 chr6 138227236 138227557 -44187685 + AluSx SINE Alu 1 321 0 391 296 57 61 chr6 138227557 138227600 -44187642 + MIR SINE MIR 208 250 -12 6687 122 30 6 chr6 138229398 138231207 -44184035 - L1MA3 LINE L1 0 6305 4449 2416 122 44 0 chr6 138231207 138231593 -44183649 + L1MA3 LINE L1 4060 4462 -1684 456 329 28 24 chr6 138233188 138233401 -44181841 - L2 LINE L2 0 3313 3100 23 68 0 0 chr6 138235058 138235102 -44180140 + AT_rich Low_complexity Low_complexity 1 44 0 760 126 0 50 chr6 138236961 138237177 -44178065 + AluJb SINE Alu 1 288 -24 244 349 18 47 chr6 138238774 138238888 -44176354 + MER5B DNA MER1_type 1 110 -68 1987 140 7 0 chr6 138238888 138239180 -44176062 - AluJb SINE Alu -16 296 3 244 349 18 47 chr6 138239180 138239234 -44176008 + MER5B DNA MER1_type 110 164 -14 7437 29 9 5 chr6 138239234 138240525 -44174717 + L1PA3 LINE L1 4861 6155 0 21 0 0 0 chr6 138240645 138240666 -44174576 + AT_rich Low_complexity Low_complexity 1 21 0 1818 166 3 7 chr6 138240666 138240961 -44174281 + AluJb SINE Alu 1 294 -18 241 223 39 123 chr6 138241311 138241359 -44173883 - MIR3 SINE MIR -6 202 152 600 261 16 49 chr6 138241359 138241422 -44173820 + MER5B DNA MER1_type 1 65 -113 1452 171 0 105 chr6 138241422 138241756 -44173486 + AluJb SINE Alu 1 299 -13 600 261 16 49 chr6 138241756 138241876 -44173366 + MER5B DNA MER1_type 65 178 0 241 223 39 123 chr6 138241876 138241957 -44173285 - MIR3 SINE MIR -56 152 84 2273 92 0 0 chr6 138242129 138242438 -44172804 + AluSx SINE Alu 1 309 0 2066 186 16 16 chr6 138243370 138243758 -44171484 + MLT1B LTR MaLR 1 388 -2 30 27 0 0 chr6 138243774 138243811 -44171431 + AT_rich Low_complexity Low_complexity 1 37 0 1136 261 88 20 chr6 138244195 138244252 -44170990 - L2 LINE L2 -733 2581 2529 2474 164 9 9 chr6 138244252 138244678 -44170564 - MSTB LTR MaLR 0 426 1 1136 261 88 20 chr6 138244678 138245018 -44170224 - L2 LINE L2 -785 2529 2157 598 182 154 53 chr6 138245184 138245301 -44169941 + LTR37B LTR ERV1 186 290 -178 294 106 0 0 chr6 138245301 138245348 -44169894 + (TG)n Simple_repeat Simple_repeat 2 48 0 598 182 154 53 chr6 138245348 138245477 -44169765 + LTR37B LTR ERV1 290 457 -11 387 0 0 0 chr6 138245720 138245763 -44169479 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 80 0 0 chr6 138246926 138246976 -44168266 + AT_rich Low_complexity Low_complexity 1 50 0 580 206 33 111 chr6 138247408 138247651 -44167591 - MER112 DNA MER1_type -6 254 31 2422 86 0 0 chr6 138248467 138248770 -44166472 - AluSp SINE Alu 0 313 11 450 298 25 19 chr6 138249232 138249393 -44165849 - MIR SINE MIR -29 233 72 636 294 96 90 chr6 138251342 138252260 -44162982 - L2 LINE L2 -24 3289 2366 240 236 94 31 chr6 138252263 138252390 -44162852 - MLT1L LTR MaLR -5 610 476 3283 123 56 89 chr6 138252740 138253423 -44161819 + L1MC2 LINE L1 5641 6300 -44 1779 176 3 0 chr6 138253423 138253712 -44161530 - AluSx SINE Alu -22 290 1 3283 123 56 89 chr6 138253712 138253745 -44161497 + L1MC2 LINE L1 6300 6333 -11 378 331 58 7 chr6 138253822 138253961 -44161281 - L2 LINE L2 -938 2376 2231 2000 117 67 22 chr6 138253999 138254358 -44160884 - THE1C LTR MaLR 0 375 1 2073 104 72 36 chr6 138254412 138254943 -44160299 + MER51A LTR ERV1 1 634 0 365 248 109 29 chr6 138254945 138255082 -44160160 - L2 LINE L2 -1189 2125 1978 590 309 63 10 chr6 138255352 138255799 -44159443 - L1MEd LINE L1 -861 1629 1062 1107 206 67 52 chr6 138255799 138256201 -44159041 - MER69 DNA AcHobo -2 2524 2092 746 238 65 22 chr6 138256204 138256435 -44158807 - MER69 DNA AcHobo -2279 247 7 360 261 72 54 chr6 138256444 138256831 -44158411 - L1MEd LINE L1 -5041 1078 685 484 275 162 35 chr6 138257216 138257561 -44157681 - L3 LINE CR1 -454 1123 735 216 67 0 0 chr6 138258271 138258301 -44156941 + (TAA)n Simple_repeat Simple_repeat 2 31 0 390 149 231 0 chr6 138258818 138258939 -44156303 - MER69 DNA AcHobo -100 2426 2278 832 222 125 117 chr6 138260184 138260944 -44154298 + LTR41 LTR ERVL 8 773 0 815 330 3 24 chr6 138262002 138262290 -44152952 - L2 LINE L2 -2993 321 40 468 269 31 78 chr6 138262546 138262802 -44152440 + L2 LINE L2 2232 2475 -839 2983 127 73 9 chr6 138262832 138263367 -44151875 - L1MB3 LINE L1 -2 6181 5613 231 215 0 0 chr6 138263406 138263471 -44151771 + CT-rich Low_complexity Low_complexity 2 66 0 283 331 32 19 chr6 138263471 138263563 -44151679 + L2 LINE L2 1135 1231 -2083 534 223 18 0 chr6 138263563 138263675 -44151567 - MER81 DNA DNA 0 114 1 283 331 32 19 chr6 138263675 138263736 -44151506 + L2 LINE L2 1231 1290 -2024 494 124 83 82 chr6 138263737 138263869 -44151373 - L1MA8 LINE L1 -279 6012 5895 2058 253 83 51 chr6 138263870 138264697 -44150545 + L2 LINE L2 1318 2171 -1143 4929 134 58 29 chr6 138264710 138265632 -44149610 - L1MA8 LINE L1 -5 6286 5339 263 235 0 0 chr6 138265632 138265680 -44149562 + MER39 LTR ERV1 1 48 -659 534 218 41 74 chr6 138265680 138265910 -44149332 + LTR26E LTR ERV1 1 293 -329 27 0 0 0 chr6 138265911 138265938 -44149304 + AT_rich Low_complexity Low_complexity 1 27 0 1220 151 18 23 chr6 138265952 138266171 -44149071 - AluSx SINE Alu -94 218 1 1789 199 31 29 chr6 138266171 138266522 -44148720 + LTR26E LTR ERV1 271 622 0 1371 232 50 32 chr6 138266522 138266951 -44148291 + MER39 LTR ERV1 70 564 -1 1213 168 0 4 chr6 138266951 138267189 -44148053 - L1 LINE L1 -805 5341 5105 1246 259 46 30 chr6 138267203 138267574 -44147668 + L2 LINE L2 2163 2539 -775 209 284 62 12 chr6 138267916 138267997 -44147245 - MIR SINE MIR -11 251 167 * 279 284 157 0 chr6 138267993 138268095 -44147147 + L2 LINE L2 3146 3263 -9 343 236 138 31 chr6 138268118 138268257 -44146985 - MIR SINE MIR -62 146 5 227 240 260 0 chr6 138268461 138268557 -44146685 - L3 LINE CR1 -89 1488 1368 4741 146 8 29 chr6 138268588 138269381 -44145861 - LTR39 LTR ERV1 0 783 8 489 351 77 41 chr6 138269443 138269936 -44145306 - L3 LINE CR1 -292 1285 775 408 91 45 0 chr6 138320856 138320922 -44094320 + AluSp/q SINE Alu 234 302 -11 377 321 30 8 chr6 138320927 138321058 -44094184 + HAL1b LINE L1 1205 1338 -10 355 218 175 31 chr6 138322175 138322404 -44092838 - MER20B DNA MER1_type 0 783 522 1721 190 0 29 chr6 138322537 138322848 -44092394 + AluJo SINE Alu 1 302 -10 413 275 154 0 chr6 138322914 138323063 -44092179 - MER20B DNA MER1_type -592 191 20 225 233 92 117 chr6 138323073 138323193 -44092049 - MIR3 SINE MIR -48 160 44 439 386 23 0 chr6 138324006 138324177 -44091065 - MIR3 SINE MIR -13 195 21 24 0 0 0 chr6 138324925 138324949 -44090293 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 138325176 138325205 -44090037 + AT_rich Low_complexity Low_complexity 1 29 0 265 285 184 22 chr6 138325373 138325512 -44089730 + MIR3 SINE MIR 41 205 -3 1148 199 85 45 chr6 138325574 138325905 -44089337 - MER2 DNA MER2_type 0 344 1 454 271 146 5 chr6 138326148 138326340 -44088902 - MIR SINE MIR -11 251 33 1015 48 0 0 chr6 138326396 138326522 -44088720 + AluY SINE Alu 174 299 -12 215 219 0 0 chr6 138326983 138327024 -44088218 + (CACTC)n Simple_repeat Simple_repeat 5 45 0 223 348 39 62 chr6 138327762 138327940 -44087302 + MIR3 SINE MIR 4 177 -31 309 89 0 0 chr6 138328024 138328069 -44087173 + (T)n Simple_repeat Simple_repeat 1 45 0 2386 61 0 3 chr6 138328231 138328528 -44086714 + AluY SINE Alu 1 296 -15 451 172 30 127 chr6 138329712 138329846 -44085396 - MER5B DNA MER1_type 0 178 58 313 318 171 8 chr6 138330559 138330688 -44084554 - L2 LINE L2 0 3272 3123 1402 219 93 26 chr6 138330871 138331332 -44083910 - MLT1D LTR MaLR 0 505 14 2272 121 0 0 chr6 138332189 138332496 -44082746 - AluSg SINE Alu -3 307 1 291 343 37 0 chr6 138333780 138333914 -44081328 - L2 LINE L2 -10 3303 3165 2560 68 0 0 chr6 138334180 138334491 -44080751 - AluY SINE Alu 0 311 1 723 235 33 88 chr6 138336167 138336345 -44078897 + MIR SINE MIR 6 165 -97 2098 133 0 3 chr6 138336345 138336639 -44078603 + AluSx SINE Alu 1 293 -19 723 235 33 88 chr6 138336639 138336732 -44078510 + MIR SINE MIR 165 262 0 1598 125 24 108 chr6 138337909 138338244 -44076998 - AluYb8 SINE Alu -11 307 1 357 234 45 27 chr6 138338973 138339084 -44076158 - MIR SINE MIR -138 124 12 2213 112 3 0 chr6 138339631 138339925 -44075317 + AluSq SINE Alu 1 295 -18 1836 153 4 0 chr6 138340412 138340686 -44074556 - AluSx SINE Alu -10 302 28 254 29 29 0 chr6 138341245 138341280 -44073962 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr6 138341715 138341743 -44073499 + AT_rich Low_complexity Low_complexity 1 28 0 310 266 266 12 chr6 138344818 138344987 -44070255 + MIR SINE MIR 41 252 -10 754 218 89 0 chr6 138345373 138345552 -44069690 + MIR SINE MIR 6 200 -62 262 225 0 99 chr6 138346270 138346381 -44068861 - MER103 DNA DNA -8 158 59 626 255 94 16 chr6 138348001 138348257 -44066985 + MLT1H1 LTR MaLR 17 258 -297 280 220 23 0 chr6 138348409 138348492 -44066750 + MLT1G1 LTR MaLR 459 594 -1 21 0 0 0 chr6 138349379 138349400 -44065842 + AT_rich Low_complexity Low_complexity 1 21 0 1817 102 46 69 chr6 138349654 138349812 -44065430 - AluSg SINE Alu -12 298 149 2254 107 10 0 chr6 138349812 138350112 -44065130 - AluSq SINE Alu -10 303 1 1817 102 46 69 chr6 138350112 138350258 -44064984 - AluSg SINE Alu -161 149 1 21 0 0 0 chr6 138351266 138351287 -44063955 + AT_rich Low_complexity Low_complexity 1 21 0 776 283 39 26 chr6 138351787 138352017 -44063225 - MIR SINE MIR -21 241 9 218 243 46 138 chr6 138352035 138352253 -44062989 - L2 LINE L2 0 3313 3116 2382 104 0 0 chr6 138352610 138352917 -44062325 + AluSg SINE Alu 1 307 -3 2278 100 7 0 chr6 138353838 138354147 -44061095 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr6 138355023 138355045 -44060197 + AT_rich Low_complexity Low_complexity 1 22 0 2062 139 0 0 chr6 138355283 138355592 -44059650 + AluSx SINE Alu 1 309 -3 625 289 190 34 chr6 138355624 138356150 -44059092 + L2 LINE L2 2369 2976 -338 204 267 89 59 chr6 138356200 138356335 -44058907 + L2 LINE L2 3175 3313 0 433 304 59 68 chr6 138356850 138357060 -44058182 - MIR SINE MIR -21 241 7 2351 99 3 0 chr6 138357725 138358028 -44057214 + AluSx SINE Alu 1 304 -8 2108 115 3 23 chr6 138358065 138358370 -44056872 + AluSp SINE Alu 1 299 -14 1315 166 6 113 chr6 138358578 138358923 -44056319 - AluJo SINE Alu 0 311 1 209 202 111 40 chr6 138359653 138359752 -44055490 + MIR3 SINE MIR 103 208 0 575 235 22 116 chr6 138361980 138362248 -44052994 - MIR SINE MIR -12 250 8 1838 167 7 7 chr6 138362349 138362648 -44052594 - AluJo SINE Alu -13 299 1 2456 64 7 0 chr6 138363375 138363671 -44051571 - AluSp SINE Alu -15 298 1 215 317 20 30 chr6 138363979 138364080 -44051162 + CT-rich Low_complexity Low_complexity 5 104 0 2189 71 0 14 chr6 138364629 138364909 -44050333 + AluSx SINE Alu 37 312 0 237 83 0 0 chr6 138364912 138364948 -44050294 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 303 323 31 8 chr6 138365864 138365991 -44049251 - L3 LINE CR1 -194 1383 1254 431 286 219 19 chr6 138366149 138366359 -44048883 - MIR SINE MIR 0 262 11 266 286 0 24 chr6 138366729 138366813 -44048429 - MER69A DNA AcHobo -91 86 5 2419 80 3 6 chr6 138367214 138367526 -44047716 - AluSx SINE Alu -1 311 1 1358 183 26 67 chr6 138368541 138368853 -44046389 - AluJo SINE Alu -2 300 2 29 0 0 0 chr6 138368942 138368971 -44046271 + AT_rich Low_complexity Low_complexity 1 29 0 936 144 0 0 chr6 138368971 138369096 -44046146 + AluJ SINE Alu 1 125 -187 278 88 119 0 chr6 138369096 138369256 -44045986 + (TA)n Simple_repeat Simple_repeat 2 180 0 417 79 119 0 chr6 138369268 138369541 -44045701 + (TA)n Simple_repeat Simple_repeat 1 305 0 31 0 0 0 chr6 138369547 138369578 -44045664 + AT_rich Low_complexity Low_complexity 1 31 0 489 45 108 6 chr6 138369583 138369740 -44045502 + (TA)n Simple_repeat Simple_repeat 2 174 0 487 106 0 0 chr6 138369743 138369809 -44045433 + FLAM_A SINE Alu 64 129 -13 231 78 59 0 chr6 138369809 138369860 -44045382 + (TA)n Simple_repeat Simple_repeat 1 54 0 949 176 7 0 chr6 138369863 138370016 -44045226 + AluJb SINE Alu 134 287 -25 305 173 0 0 chr6 138370037 138370089 -44045153 + L1MC4 LINE L1 6652 6703 -1339 2663 36 0 10 chr6 138371417 138371726 -44043516 - AluY SINE Alu -5 306 1 2095 104 37 0 chr6 138373676 138373854 -44041388 - AluY SINE Alu -3 308 113 187 29 86 0 chr6 138373854 138373889 -44041353 + T-rich Low_complexity Low_complexity 2 39 0 2095 104 37 0 chr6 138373889 138374007 -44041235 - AluY SINE Alu -198 113 1 2506 87 0 0 chr6 138374487 138374796 -44040446 - AluSg SINE Alu -1 309 1 205 297 54 14 chr6 138375571 138375645 -44039597 + MIR SINE MIR 118 194 -68 192 327 12 109 chr6 138375730 138375895 -44039347 - MIR SINE MIR -113 149 1 318 221 37 105 chr6 138375936 138376126 -44039116 - MER104 DNA Tc2 -3 177 1 265 245 21 85 chr6 138377194 138377288 -44037954 - L2 LINE L2 -1 3271 3184 365 284 71 65 chr6 138377417 138377572 -44037670 - MIR3 SINE MIR -49 159 4 2511 70 0 6 chr6 138379929 138380242 -44035000 + AluY SINE Alu 1 311 0 336 320 122 12 chr6 138380673 138380845 -44034397 + MIR3 SINE MIR 16 206 -2 393 219 73 24 chr6 138380871 138380994 -44034248 - MIR SINE MIR -12 250 122 2340 86 0 13 chr6 138380994 138381297 -44033945 + AluSc SINE Alu 1 299 -10 212 286 26 52 chr6 138381950 138382027 -44033215 - MIR SINE MIR -6 256 182 590 254 124 16 chr6 138382754 138382939 -44032303 - MIR SINE MIR -18 244 40 186 333 63 56 chr6 138383007 138383133 -44032109 - MIR SINE MIR -61 147 21 26 64 0 0 chr6 138384060 138384107 -44031135 + AT_rich Low_complexity Low_complexity 1 47 0 197 307 146 29 chr6 138384183 138384320 -44030922 + L3 LINE CR1 1094 1246 -331 * 683 264 60 0 chr6 138384311 138384493 -44030749 - MIR SINE MIR 0 262 70 311 349 82 0 chr6 138384613 138384759 -44030483 + MIR3 SINE MIR 45 202 -6 218 302 125 0 chr6 138384754 138384850 -44030392 + L3 LINE CR1 1250 1357 -220 * 2428 89 0 0 chr6 138385990 138386294 -44028948 + AluSx SINE Alu 1 304 -8 1134 247 36 64 chr6 138386657 138386890 -44028352 - L1ME3A LINE L1 -222 5948 5710 2223 122 0 0 chr6 138386890 138387184 -44028058 - AluSq SINE Alu -19 294 1 1134 247 36 64 chr6 138387184 138387448 -44027794 - L1ME3A LINE L1 -460 5710 5465 230 111 0 0 chr6 138387449 138387485 -44027757 + MLT2A2 LTR ERVL 1 36 -417 * 385 163 0 25 chr6 138387456 138387536 -44027706 + MLT2A1 LTR ERVL 366 443 -1 446 284 92 0 chr6 138387567 138387785 -44027457 - L1ME3A LINE L1 -2196 3950 3713 1410 233 83 29 chr6 138387831 138388286 -44026956 + MLT1D LTR MaLR 21 500 -5 796 286 112 36 chr6 138388335 138389450 -44025792 - L1ME3A LINE L1 -2457 3689 2490 1311 218 81 28 chr6 138389590 138389947 -44025295 - Charlie4a DNA MER1_type -1453 508 120 1582 208 17 3 chr6 138389947 138390245 -44024997 - AluJb SINE Alu -10 302 1 1311 218 81 28 chr6 138390245 138390345 -44024897 - Charlie4a DNA MER1_type -1841 120 27 843 164 0 0 chr6 138390445 138390573 -44024669 - AluJ SINE Alu -14 298 171 744 174 0 0 chr6 138390574 138390689 -44024553 - AluJ SINE Alu -197 115 1 21 57 0 0 chr6 138390797 138390832 -44024410 + AT_rich Low_complexity Low_complexity 1 35 0 1077 210 106 52 chr6 138391255 138391679 -44023563 + L1ME2 LINE L1 5709 6155 -9 1601 179 46 23 chr6 138391706 138392008 -44023234 + AluJb SINE Alu 1 309 -3 245 263 70 0 chr6 138392024 138392081 -44023161 - L2 LINE L2 -26 3287 3227 673 137 0 60 chr6 138392469 138392586 -44022656 + FLAM_C SINE Alu 20 129 -14 245 208 114 67 chr6 138392950 138393099 -44022143 - MER103 DNA DNA -1 165 10 2361 109 3 0 chr6 138393885 138394196 -44021046 + AluSx SINE Alu 1 312 0 326 141 39 0 chr6 138394198 138394276 -44020966 + L1MB4 LINE L1 6100 6180 0 586 39 39 0 chr6 138396168 138396245 -44018997 + MADE1 DNA Mariner 1 80 0 2327 102 0 10 chr6 138397011 138397324 -44017918 + AluSx SINE Alu 1 310 -2 907 136 0 0 chr6 138398477 138398602 -44016640 + FLAM_C SINE Alu 1 125 -18 695 0 0 0 chr6 138398858 138398935 -44016307 + MADE1 DNA Mariner 1 77 -3 231 352 65 28 chr6 138398948 138399056 -44016186 - MIR SINE MIR -124 138 27 234 0 0 0 chr6 138399177 138399203 -44016039 + (A)n Simple_repeat Simple_repeat 1 26 0 409 326 11 38 chr6 138400034 138400218 -44015024 + MIR3 SINE MIR 3 181 -27 394 239 85 45 chr6 138400886 138401055 -44014187 - MIR3 SINE MIR -8 200 29 514 292 56 6 chr6 138401708 138401886 -44013356 + MIR SINE MIR 63 249 -13 23 0 0 0 chr6 138402023 138402046 -44013196 + AT_rich Low_complexity Low_complexity 1 23 0 1554 160 56 7 chr6 138402062 138402331 -44012911 - AluJo SINE Alu -30 282 1 485 332 90 14 chr6 138403852 138404075 -44011167 + MIR SINE MIR 2 241 -21 1309 140 30 131 chr6 138404136 138404472 -44010770 + AluJo SINE Alu 1 302 -10 388 264 88 64 chr6 138404640 138404890 -44010352 - MIR SINE MIR 0 262 7 207 215 108 15 chr6 138404955 138405020 -44010222 + MIR SINE MIR 77 147 -115 1945 170 40 6 chr6 138405151 138405504 -44009738 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr6 138405748 138405777 -44009465 + AT_rich Low_complexity Low_complexity 1 29 0 261 275 71 66 chr6 138406242 138406312 -44008930 + L2 LINE L2 3097 3165 -148 3663 139 48 25 chr6 138406312 138407043 -44008199 - L1MA8 LINE L1 -5 6286 5539 261 275 71 66 chr6 138407043 138407154 -44008088 + L2 LINE L2 3165 3279 -34 201 320 13 40 chr6 138407141 138407216 -44008026 + L2 LINE L2 3200 3272 0 * 448 286 9 9 chr6 138408318 138408430 -44006812 - MER5A DNA MER1_type -26 163 52 180 0 0 0 chr6 138408579 138408599 -44006643 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 358 206 0 0 chr6 138408660 138408723 -44006519 - MER45 DNA AcHobo 0 1581 1519 2210 125 0 7 chr6 138408727 138409030 -44006212 - AluSx SINE Alu -9 303 3 447 158 0 0 chr6 138409064 138409140 -44006102 - MER45 DNA AcHobo -57 121 46 217 306 129 48 chr6 138410822 138410969 -44004273 + MER5A DNA MER1_type 31 189 0 523 207 171 24 chr6 138410978 138411142 -44004100 + MER5A DNA MER1_type 2 189 0 883 173 146 0 chr6 138411365 138411550 -44003692 - MER58A DNA MER1_type 0 224 13 252 282 82 81 chr6 138411940 138412181 -44003061 - L2 LINE L2 -280 3033 2797 2029 146 32 8 chr6 138412343 138412714 -44002528 - MER65A LTR ERV1 -1 444 65 204 333 116 45 chr6 138412730 138412997 -44002245 - L2 LINE L2 -704 2610 2325 266 219 109 47 chr6 138413898 138414026 -44001216 + L1ME4a LINE L1 5986 6121 0 313 279 213 29 chr6 138414060 138414332 -44000910 + L2 LINE L2 2560 2881 -433 237 65 0 0 chr6 138415089 138415120 -44000122 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1565 181 22 4 chr6 138415122 138415399 -43999843 - AluJo SINE Alu -26 286 5 1692 160 0 62 chr6 138420003 138420309 -43994933 - AluJb SINE Alu -13 299 13 251 267 160 38 chr6 138421256 138421387 -43993855 - MIR SINE MIR -111 151 5 1869 191 111 55 chr6 138421471 138421808 -43993434 + LTR29 LTR ERV1 4 389 -233 1785 104 101 50 chr6 138421808 138422165 -43993077 + THE1C LTR MaLR 1 375 0 1869 191 111 55 chr6 138422165 138422413 -43992829 + LTR29 LTR ERV1 389 622 0 4543 132 19 18 chr6 138422713 138423434 -43991808 + MER72 LTR ERV1 1 722 0 318 263 61 0 chr6 138423586 138423685 -43991557 + MLT1L LTR MaLR 176 280 -335 237 325 104 12 chr6 138423809 138423972 -43991270 + MLT1L LTR MaLR 434 611 -4 501 303 110 26 chr6 138424387 138424651 -43990591 - LTR16B LTR ERVL -91 373 88 206 370 50 10 chr6 138424779 138424879 -43990363 + L2 LINE L2 3102 3205 -67 431 238 131 17 chr6 138425576 138425812 -43989430 - LTR41 LTR ERVL 0 795 506 758 202 159 30 chr6 138426253 138426555 -43988687 - LTR41 LTR ERVL -446 349 1 195 313 170 45 chr6 138426604 138426716 -43988526 + L2 LINE L2 3179 3304 -9 1679 150 99 72 chr6 138427304 138427492 -43987750 - MLT2D LTR ERVL -24 530 349 1820 156 10 10 chr6 138427492 138427794 -43987448 - AluJo SINE Alu -10 302 1 1679 150 99 72 chr6 138427794 138427984 -43987258 - MLT2D LTR ERVL -205 349 1 2044 146 125 10 chr6 138428074 138428458 -43986784 - MSTA LTR MaLR 0 428 1 328 326 32 37 chr6 138428458 138428645 -43986597 + L1M4 LINE L1 3726 3911 -2235 280 260 122 61 chr6 138428657 138428838 -43986404 + L1ME LINE L1 270 461 -5609 272 287 89 26 chr6 138428921 138429176 -43986066 + L1ME LINE L1 472 737 -5346 966 266 25 19 chr6 138429179 138429495 -43985747 + L1ME1 LINE L1 5798 6115 -51 933 169 32 0 chr6 138429498 138429652 -43985590 + FRAM SINE Alu 1 158 -18 30 27 0 0 chr6 138429705 138429742 -43985500 + AT_rich Low_complexity Low_complexity 1 37 0 360 297 26 2 chr6 138429970 138430178 -43985064 - L1MEc LINE L1 -875 1701 1543 1230 290 108 57 chr6 138430288 138431439 -43983803 - L1MEc LINE L1 -4900 1305 97 23 0 0 0 chr6 138431459 138431482 -43983760 + AT_rich Low_complexity Low_complexity 1 23 0 288 339 6 23 chr6 138431857 138432031 -43983211 + L1ME LINE L1 5469 5639 -482 1006 125 99 1 chr6 138432459 138432658 -43982584 - L1MA8 LINE L1 -1 6299 6066 327 379 70 5 chr6 138432670 138432884 -43982358 + L1MEc LINE L1 130 357 -6039 533 70 0 0 chr6 138433310 138433381 -43981861 + AluSp/q SINE Alu 228 298 -15 1312 261 63 24 chr6 138433382 138433965 -43981277 + L1MEc LINE L1 670 1275 -5121 589 170 30 0 chr6 138434278 138434378 -43980864 + AluJo SINE Alu 34 136 -176 1728 124 14 0 chr6 138434624 138434899 -43980343 - L1MA4 LINE L1 -12 6288 6010 252 0 0 0 chr6 138435528 138435556 -43979686 + (A)n Simple_repeat Simple_repeat 1 28 0 252 333 114 9 chr6 138436220 138436334 -43978908 - L2 LINE L2 -13 3259 3134 243 354 43 64 chr6 138436397 138436677 -43978565 - L2 LINE L2 -337 2977 2704 1718 284 107 21 chr6 138436716 138437381 -43977861 + HAL1 LINE L1 2 723 -1784 1394 146 109 126 chr6 138437390 138437879 -43977363 + Zaphod DNA AcHobo 692 1169 -2862 1757 159 25 11 chr6 138437879 138438162 -43977080 + AluJo SINE Alu 3 289 -23 1394 146 109 126 chr6 138438162 138438321 -43976921 + Zaphod DNA AcHobo 1169 1329 -2702 628 189 232 42 chr6 138438323 138438459 -43976783 + Zaphod DNA AcHobo 3296 3405 -626 1856 148 13 7 chr6 138438459 138438757 -43976485 - AluJb SINE Alu -12 300 1 628 189 232 42 chr6 138438757 138438926 -43976316 + Zaphod DNA AcHobo 3405 3659 -372 208 318 0 0 chr6 138439630 138439693 -43975549 + T-rich Low_complexity Low_complexity 3 65 0 22 0 0 0 chr6 138439747 138439769 -43975473 + AT_rich Low_complexity Low_complexity 1 22 0 526 317 58 18 chr6 138439963 138440187 -43975055 + MIR SINE MIR 6 238 -24 2264 124 14 30 chr6 138440281 138440651 -43974591 + THE1B LTR MaLR 1 364 0 294 288 46 14 chr6 138440836 138441100 -43974142 - L1MC4a LINE L1 -1925 5883 5546 796 151 16 0 chr6 138441360 138441486 -43973756 + MLT1D LTR MaLR 371 498 -7 1846 151 25 0 chr6 138441580 138441865 -43973377 + AluSx SINE Alu 1 292 -20 1933 203 12 52 chr6 138441933 138442415 -43972827 + L1MA10 LINE L1 5834 6296 -38 1021 117 14 0 chr6 138442415 138442560 -43972682 + FRAM SINE Alu 20 166 -10 1712 180 6 32 chr6 138442802 138443113 -43972129 - AluJo SINE Alu -9 303 1 259 324 158 50 chr6 138443615 138444291 -43970951 - L2 LINE L2 -318 2954 2128 1700 171 18 0 chr6 138444291 138444566 -43970676 + AluJb SINE Alu 7 286 -26 259 324 158 50 chr6 138444566 138444918 -43970324 - L2 LINE L2 -1144 2128 1816 184 352 9 9 chr6 138444921 138445026 -43970216 - L2 LINE L2 -1733 1581 1477 1355 160 8 21 chr6 138445118 138445356 -43969886 - AluSg/x SINE Alu -7 303 69 347 306 27 77 chr6 138445394 138445616 -43969626 + L3 LINE CR1 1355 1565 -12 294 305 0 0 chr6 138445913 138445972 -43969270 - L2 LINE L2 -21 3251 3193 * 454 271 8 17 chr6 138445969 138446087 -43969155 + L2 LINE L2 3194 3310 -3 261 206 159 65 chr6 138446769 138446876 -43968366 + MIR SINE MIR 19 135 -73 3717 193 87 98 chr6 138446900 138447514 -43967728 - L1MC4 LINE L1 -4 8038 7419 1855 158 3 0 chr6 138447514 138447806 -43967436 + AluY SINE Alu 1 293 -18 3717 193 87 98 chr6 138447806 138447884 -43967358 - L1MC4 LINE L1 -623 7419 7342 2124 130 29 35 chr6 138447884 138448261 -43966981 - THE1C LTR MaLR 0 375 1 3717 193 87 98 chr6 138448261 138448998 -43966244 - L1MC4 LINE L1 -700 7342 6624 306 243 29 6 chr6 138449020 138449193 -43966049 + (TA)n Simple_repeat Simple_repeat 2 178 0 189 195 0 0 chr6 138449206 138449247 -43965995 + (TA)n Simple_repeat Simple_repeat 2 42 0 592 244 96 51 chr6 138449330 138449802 -43965440 - L1MC3 LINE L1 -1168 6617 6168 1687 175 85 66 chr6 138449802 138450259 -43964983 + MLT1C LTR MaLR 1 466 -1 592 244 96 51 chr6 138450259 138451080 -43964162 - L1MC3 LINE L1 -1617 6168 5260 228 67 0 0 chr6 138451303 138451333 -43963909 + (T)n Simple_repeat Simple_repeat 1 30 0 242 313 52 22 chr6 138451338 138451606 -43963636 - L1MC3 LINE L1 -1136 5010 4735 458 258 23 28 chr6 138451755 138451972 -43963270 - L1MC3 LINE L1 -1551 4595 4380 2168 133 6 37 chr6 138453370 138453722 -43961520 + THE1B LTR MaLR 1 341 -23 11645 96 6 2 chr6 138453724 138455297 -43959945 + THE1B-int LTR MaLR 1 1579 -1 2416 124 5 30 chr6 138455306 138455678 -43959564 + THE1B LTR MaLR 2 364 0 25 51 0 0 chr6 138455894 138455933 -43959309 + AT_rich Low_complexity Low_complexity 1 39 0 1090 295 78 22 chr6 138455937 138456628 -43958614 - L1MC3 LINE L1 -1822 4324 3595 206 278 56 22 chr6 138456683 138456773 -43958469 + MIR SINE MIR 120 212 -50 2212 149 5 19 chr6 138457092 138457461 -43957781 + THE1B LTR MaLR 1 364 0 183 217 87 0 chr6 138457522 138457568 -43957674 + L2 LINE L2 3250 3299 -14 29250 69 10 2 chr6 138458168 138462869 -43952373 - L1PA6 LINE L1 -8 6146 1412 22 35 0 0 chr6 138463211 138463240 -43952002 + AT_rich Low_complexity Low_complexity 1 29 0 194 157 0 98 chr6 138463293 138463344 -43951898 - L2 LINE L2 0 3313 3268 1508 166 23 8 chr6 138463995 138464254 -43950988 + AluJo SINE Alu 31 293 -19 372 248 158 32 chr6 138464548 138464906 -43950336 - L1MC4a LINE L1 -272 5890 5484 269 311 34 59 chr6 138465273 138465392 -43949850 + L1MC/D LINE L1 5494 5609 -2199 235 286 13 62 chr6 138465467 138465694 -43949548 - L1MC4a LINE L1 -755 5391 5176 2079 90 7 4 chr6 138465776 138466080 -43949162 - AluSc SINE Alu 0 305 1 598 291 106 3 chr6 138466219 138466501 -43948741 - L1MC4a LINE L1 -1318 4828 4518 699 336 124 39 chr6 138466545 138467471 -43947771 - L1MC4a LINE L1 -1696 4450 3446 451 267 88 40 chr6 138467954 138468388 -43946854 - L1MEd LINE L1 -1046 1444 894 24 41 0 20 chr6 138470371 138470401 -43944841 + AT_rich Low_complexity Low_complexity 1 31 -17 2118 128 0 0 chr6 138470401 138470689 -43944553 - AluSx SINE Alu -24 288 1 24 41 0 20 chr6 138470689 138470707 -43944535 + AT_rich Low_complexity Low_complexity 31 48 0 185 0 0 39 chr6 138471323 138471349 -43943893 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 849 138 8 0 chr6 138471349 138471479 -43943763 - MER3 DNA MER1_type -78 131 1 434 259 37 0 chr6 138472219 138472327 -43942915 - L2 LINE L2 -6 3307 3196 301 254 0 15 chr6 138472662 138472729 -43942513 + L2 LINE L2 3248 3313 0 572 299 124 18 chr6 138472962 138473406 -43941836 + L1ME4a LINE L1 5476 5966 -155 396 277 223 0 chr6 138475980 138476128 -43939114 + MER5A DNA MER1_type 9 189 0 959 183 0 0 chr6 138476393 138476546 -43938696 + FRAM SINE Alu 1 150 -26 2261 110 3 0 chr6 138477803 138478103 -43937139 - AluSx SINE Alu -11 301 1 216 156 52 10 chr6 138478878 138478974 -43936268 + (TA)n Simple_repeat Simple_repeat 1 100 0 233 165 82 0 chr6 138479083 138479168 -43936074 + (TA)n Simple_repeat Simple_repeat 2 93 0 254 120 160 20 chr6 138479232 138479282 -43935960 - L2 LINE L2 -11 3302 3246 205 289 165 10 chr6 138479847 138479944 -43935298 + MIR SINE MIR 151 262 0 1075 138 0 0 chr6 138480204 138480364 -43934878 - FRAM SINE Alu -6 160 1 203 286 0 0 chr6 138480796 138480845 -43934397 + MER5A DNA MER1_type 4 52 -137 2147 115 3 10 chr6 138481844 138482157 -43933085 - AluSx SINE Alu -1 311 1 2262 102 3 3 chr6 138483212 138483515 -43931727 - AluSx SINE Alu -8 304 2 358 310 182 11 chr6 138483736 138483923 -43931319 - MIR SINE MIR -12 250 32 1136 153 47 8 chr6 138484145 138484380 -43930862 + L1MD3 LINE L1 7752 7995 0 1584 188 3 33 chr6 138486234 138486538 -43928704 + AluJo SINE Alu 3 297 -15 36513 96 10 10 chr6 138486555 138492700 -43922542 + L1PA6 LINE L1 11 6153 -1 181 355 19 19 chr6 138492701 138492808 -43922434 + MIR SINE MIR 79 185 -77 31 0 0 0 chr6 138494561 138494592 -43920650 + AT_rich Low_complexity Low_complexity 1 31 0 225 254 92 31 chr6 138495136 138495266 -43919976 + L1ME LINE L1 5802 5939 -231 505 271 121 12 chr6 138495476 138495642 -43919600 + MIR3 SINE MIR 20 203 -5 290 314 65 17 chr6 138496208 138496366 -43918876 - MIR SINE MIR -58 204 34 208 236 0 18 chr6 138496400 138496455 -43918787 + MIR3 SINE MIR 150 203 -5 814 189 0 0 chr6 138496615 138496747 -43918495 + FLAM_C SINE Alu 1 132 -11 21 0 0 0 chr6 138497502 138497523 -43917719 + AT_rich Low_complexity Low_complexity 1 21 0 286 120 0 12 chr6 138497783 138497834 -43917408 - MADE1 DNA Mariner -36 44 2 246 346 0 8 chr6 138498005 138498138 -43917104 + L1M4 LINE L1 4883 5014 -1132 356 289 67 0 chr6 138498145 138498325 -43916917 + L1M4 LINE L1 5209 5400 -746 2271 102 3 6 chr6 138498880 138499194 -43916048 - AluSp SINE Alu 0 313 1 427 261 36 24 chr6 138499392 138499557 -43915685 - MLT1L LTR MaLR -324 291 125 23 0 0 0 chr6 138500210 138500233 -43915009 + AT_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr6 138500290 138500344 -43914898 + AT_rich Low_complexity Low_complexity 1 54 0 805 238 11 0 chr6 138500684 138500869 -43914373 - MER5A DNA MER1_type -2 187 1 417 272 84 0 chr6 138501099 138501246 -43913996 - MIR SINE MIR -62 200 37 1198 195 65 10 chr6 138501709 138502016 -43913226 - MER33 DNA MER1_type 0 324 1 323 274 66 85 chr6 138502090 138502359 -43912883 - MIR SINE MIR -14 248 1 2057 137 0 3 chr6 138502389 138502688 -43912554 - AluSx SINE Alu -14 298 1 399 295 0 18 chr6 138502694 138502806 -43912436 - MIR3 SINE MIR -45 163 54 953 191 68 30 chr6 138502988 138503324 -43911918 + L1MC5 LINE L1 7553 7901 -60 30 0 0 0 chr6 138503338 138503368 -43911874 + AT_rich Low_complexity Low_complexity 1 30 0 252 319 0 11 chr6 138503474 138503568 -43911674 - MIR SINE MIR -30 232 140 364 355 112 5 chr6 138504290 138504487 -43910755 + L2 LINE L2 2843 3060 -212 279 317 10 30 chr6 138505254 138505355 -43909887 + L2 LINE L2 3209 3307 -6 314 247 129 0 chr6 138505693 138505778 -43909464 - MIR3 SINE MIR -47 161 66 254 208 0 19 chr6 138505840 138505893 -43909349 + Tigger5 DNA MER2_type 1 52 -2271 * 381 222 0 14 chr6 138505864 138505936 -43909306 + Tigger5 DNA MER2_type 2251 2321 -2 192 289 22 0 chr6 138506103 138506148 -43909094 + MER5A DNA MER1_type 122 167 -22 309 268 158 33 chr6 138506587 138506770 -43908472 - L1MC4 LINE L1 -222 7820 7615 1478 229 88 51 chr6 138506774 138507380 -43907862 - L1MC4 LINE L1 -524 7518 6891 405 231 39 0 chr6 138507430 138507534 -43907708 - L1M4 LINE L1 -1313 4833 4726 757 131 20 171 chr6 138507539 138507791 -43907451 + L1MA10 LINE L1 6119 6332 -2 315 299 56 56 chr6 138507792 138508351 -43906891 - L1M4 LINE L1 -1415 4731 4188 252 182 0 0 chr6 138508423 138508478 -43906764 - L1MC4 LINE L1 -1340 6702 6648 2107 119 0 14 chr6 138508484 138508778 -43906464 - AluSx SINE Alu -22 290 1 615 293 35 62 chr6 138508785 138508917 -43906325 - L1M4 LINE L1 -2028 4118 3984 435 119 0 0 chr6 138508917 138508984 -43906258 + (TA)n Simple_repeat Simple_repeat 2 68 0 615 293 35 62 chr6 138508984 138509468 -43905774 - L1M4 LINE L1 -2162 3984 3515 2152 119 3 3 chr6 138509918 138510212 -43905030 - AluSx SINE Alu -18 294 1 225 288 72 68 chr6 138510218 138510368 -43904874 + MIR SINE MIR 6 156 -52 319 143 0 0 chr6 138510885 138510934 -43904308 + L2 LINE L2 3216 3264 -8 408 55 0 0 chr6 138511220 138511275 -43903967 + (TG)n Simple_repeat Simple_repeat 2 56 0 6606 113 17 17 chr6 138513029 138514168 -43901074 - L1MA3 LINE L1 0 6305 5169 2039 100 17 7 chr6 138514629 138514918 -43900324 + AluSq SINE Alu 1 292 -21 218 152 0 22 chr6 138515411 138515457 -43899785 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 565 301 39 0 chr6 138515735 138515938 -43899304 - MER46C DNA MER2_type 0 338 128 1073 214 97 44 chr6 138516136 138516478 -43898764 + MER57A LTR ERV1 42 401 -2 553 208 25 0 chr6 138517974 138518094 -43897148 - MER5A DNA MER1_type -8 181 59 204 40 0 0 chr6 138518832 138518857 -43896385 + (T)n Simple_repeat Simple_repeat 1 25 0 525 32 0 0 chr6 138519381 138519444 -43895798 + (TG)n Simple_repeat Simple_repeat 2 64 0 341 333 20 47 chr6 138521791 138521941 -43893301 + L2 LINE L2 3102 3247 -25 285 209 0 0 chr6 138521941 138522008 -43893234 + (CATA)n Simple_repeat Simple_repeat 1 67 0 960 285 36 3 chr6 138522235 138522565 -43892677 - Tigger8 DNA MER2_type -173 493 153 257 307 29 50 chr6 138522567 138522707 -43892535 + L2 LINE L2 2487 2623 -691 543 107 0 156 chr6 138522708 138522830 -43892412 - MLT1B LTR MaLR -167 223 121 342 275 108 77 chr6 138522830 138523241 -43892001 + L2 LINE L2 2638 3055 -217 1105 280 137 22 chr6 138524110 138524557 -43890685 - MLT1F LTR MaLR -37 505 8 27 0 0 0 chr6 138527776 138527803 -43887439 + AT_rich Low_complexity Low_complexity 1 27 0 429 231 117 83 chr6 138527832 138528157 -43887085 - L1ME4a LINE L1 -264 5857 5522 25213 136 27 17 chr6 138528437 138530753 -43884489 - L1PA8A LINE L1 -2 6444 4151 1865 113 0 0 chr6 138530753 138531009 -43884233 - AluSq SINE Alu 0 313 58 25213 136 27 17 chr6 138531009 138534100 -43881142 - L1PA8A LINE L1 -2295 4151 141 237 350 52 0 chr6 138534642 138534739 -43880503 + MIR SINE MIR 43 144 -64 674 294 92 18 chr6 138534804 138535032 -43880210 + MIR SINE MIR 12 256 -6 28 48 0 0 chr6 138535606 138535648 -43879594 + AT_rich Low_complexity Low_complexity 1 42 0 1356 48 0 0 chr6 138536713 138536881 -43878361 + L1PA6 LINE L1 5982 6149 -5 234 274 16 0 chr6 138536882 138536944 -43878298 + MIR SINE MIR 200 262 0 666 160 84 0 chr6 138537651 138537770 -43877472 + FRAM SINE Alu 4 132 -44 758 71 31 8 chr6 138537780 138537907 -43877335 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 467 306 116 41 chr6 138538085 138538549 -43876693 + L1ME LINE L1 5321 5819 -302 703 303 26 17 chr6 138538635 138538866 -43876376 + MIR SINE MIR 23 255 -7 297 0 0 0 chr6 138539316 138539349 -43875893 + (TG)n Simple_repeat Simple_repeat 2 34 0 680 202 9 0 chr6 138539431 138539545 -43875697 - FLAM_A SINE Alu -18 115 1 251 256 108 85 chr6 138540185 138540314 -43874928 + MIR SINE MIR 59 190 -72 181 302 243 18 chr6 138540612 138540781 -43874461 - MIR SINE MIR -10 252 46 202 158 0 53 chr6 138541142 138541199 -43874043 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 198 308 50 76 chr6 138541473 138541671 -43873571 - L2 LINE L2 -5 3267 3075 453 326 44 35 chr6 138542061 138542288 -43872954 + MIR SINE MIR 34 262 0 2263 88 3 0 chr6 138542324 138542619 -43872623 - AluSg SINE Alu -12 298 3 800 184 122 76 chr6 138543068 138543343 -43871899 + MLT2B1 LTR ERVL 265 499 -21 386 265 0 34 chr6 138543555 138543672 -43871570 + MER103 DNA DNA 8 120 -46 243 0 0 0 chr6 138543733 138543760 -43871482 + (T)n Simple_repeat Simple_repeat 1 27 0 615 107 0 0 chr6 138544241 138544325 -43870917 - AluS SINE Alu -229 84 1 1285 205 102 68 chr6 138545638 138545720 -43869522 + MSTD LTR MaLR 1 79 -317 1889 142 7 28 chr6 138545720 138546037 -43869205 + AluSx SINE Alu 1 311 0 1285 205 102 68 chr6 138546037 138546334 -43868908 + MSTD LTR MaLR 79 394 -2 611 299 24 62 chr6 138546397 138546738 -43868504 + MLT1I LTR MaLR 64 391 -18 356 304 54 18 chr6 138546748 138546860 -43868382 + MIR SINE MIR 113 228 -34 441 203 55 77 chr6 138547077 138547259 -43867983 - MER5C DNA MER1_type -19 305 128 1614 159 36 32 chr6 138547555 138547863 -43867379 - AluJo SINE Alu -3 309 1 684 183 0 29 chr6 138547863 138548000 -43867242 - AluJo/FLAM SINE Alu -169 133 1 2587 155 14 11 chr6 138548652 138549097 -43866145 - Tigger2 DNA MER2_type 0 2718 2273 470 88 0 44 chr6 138549087 138549155 -43866087 - Tigger2 DNA MER2_type -2649 69 5 * 324 0 0 0 chr6 138549159 138549195 -43866047 + (CA)n Simple_repeat Simple_repeat 1 36 0 182 188 0 21 chr6 138549197 138549245 -43865997 + (TA)n Simple_repeat Simple_repeat 2 48 0 1463 170 20 48 chr6 138549719 138550013 -43865229 + AluJb SINE Alu 11 296 -16 21 0 0 0 chr6 138550017 138550038 -43865204 + AT_rich Low_complexity Low_complexity 1 21 0 1950 206 171 22 chr6 138550074 138550816 -43864426 - Charlie2 DNA MER1_type -155 2707 1855 639 280 82 35 chr6 138550854 138551136 -43864106 - Charlie2 DNA MER1_type -2560 302 8 280 329 35 100 chr6 138551472 138551703 -43863539 + L2 LINE L2 3038 3253 -19 262 271 105 44 chr6 138551984 138552165 -43863077 - L2 LINE L2 -438 2876 2685 34 24 0 0 chr6 138552227 138552268 -43862974 + AT_rich Low_complexity Low_complexity 1 41 0 286 322 42 0 chr6 138552338 138552456 -43862786 + L1M4c LINE L1 1367 1489 -4895 553 197 0 7 chr6 138552468 138552640 -43862602 - MLT1B LTR MaLR -8 382 208 1361 241 70 0 chr6 138552643 138552958 -43862284 - MLT1C-int LTR MaLR -159 1212 876 3201 194 29 51 chr6 138553034 138553838 -43861404 - MLT1C-int LTR MaLR -484 887 1 1721 228 51 27 chr6 138553838 138554289 -43860953 - MLT1C LTR MaLR 0 467 6 313 306 123 15 chr6 138554313 138554574 -43860668 + L1M4c LINE L1 1679 1967 -4596 353 279 121 15 chr6 138554779 138555104 -43860138 + L1M4c LINE L1 2226 2544 -3838 468 204 34 0 chr6 138555299 138555387 -43859855 + AluJ/FLAM SINE Alu 2 92 -220 989 293 120 43 chr6 138555395 138556067 -43859175 + L1M4c LINE L1 2745 3364 -3018 306 67 0 0 chr6 138556067 138556112 -43859130 + (TG)n Simple_repeat Simple_repeat 2 46 0 989 293 120 43 chr6 138556112 138556421 -43858821 + L1M4c LINE L1 3364 3648 -2734 279 0 0 0 chr6 138556421 138556452 -43858790 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1553 196 0 14 chr6 138556456 138556736 -43858506 - AluJo SINE Alu -30 282 7 989 293 120 43 chr6 138556736 138556892 -43858350 + L1M4c LINE L1 3650 3976 -2406 912 292 33 31 chr6 138556951 138557464 -43857778 + L1M4c LINE L1 4113 4626 -1756 1708 270 57 26 chr6 138557534 138558252 -43856990 + L1MC4 LINE L1 6939 7678 -364 1386 298 108 22 chr6 138558282 138558882 -43856360 - MLT2F LTR ERVL -11 652 1 357 342 0 0 chr6 138558882 138559002 -43856240 - ERVL-F LTR ERVL -8 5756 5637 1245 217 95 18 chr6 138559030 138559357 -43855885 + MLT1A1 LTR MaLR 13 364 -1 1584 188 60 9 chr6 138559538 138559857 -43855385 - ERVL-F LTR ERVL -357 5407 5073 1119 263 124 64 chr6 138560214 138561094 -43854148 + L2 LINE L2 2395 3313 0 738 333 85 22 chr6 138561164 138561598 -43853644 + LTR33 LTR ERVL 23 485 -36 1292 320 80 0 chr6 138561598 138562076 -43853166 + LTR33 LTR ERVL 1 516 -5 377 187 33 0 chr6 138562466 138562557 -43852685 - L1MB4 LINE L1 -1 6179 6086 1881 132 66 38 chr6 138563131 138563496 -43851746 - THE1C LTR MaLR 0 375 1 607 255 154 48 chr6 138563864 138564221 -43851021 - MLT1J LTR MaLR -111 400 6 2002 155 0 0 chr6 138564488 138564784 -43850458 + AluSx SINE Alu 5 300 -12 2291 95 3 3 chr6 138565078 138565383 -43849859 - AluSq SINE Alu -8 305 1 1823 155 49 0 chr6 138565523 138565827 -43849415 + MER7A DNA MER2_type 2 318 -28 675 238 32 22 chr6 138565886 138566071 -43849171 - MIR SINE MIR 0 262 76 27 49 0 0 chr6 138566080 138566121 -43849121 + AT_rich Low_complexity Low_complexity 1 41 0 1789 105 151 0 chr6 138566243 138566501 -43848741 - AluSx SINE Alu -15 297 1 21 95 0 0 chr6 138567124 138567187 -43848055 + AT_rich Low_complexity Low_complexity 1 63 0 1838 243 25 32 chr6 138567256 138567811 -43847431 - L1MC4a LINE L1 -1841 5967 5417 188 344 22 11 chr6 138568051 138568141 -43847101 + MIR SINE MIR 51 141 -67 24 0 0 0 chr6 138568532 138568556 -43846686 + AT_rich Low_complexity Low_complexity 1 24 0 230 293 37 24 chr6 138569354 138569436 -43845806 + L2 LINE L2 2684 2766 -548 22 0 0 0 chr6 138569926 138569948 -43845294 + AT_rich Low_complexity Low_complexity 1 22 0 1535 162 25 11 chr6 138570707 138571026 -43844216 + AluJo SINE Alu 1 323 0 1119 252 0 0 chr6 138571248 138571470 -43843772 - MER58A DNA MER1_type 0 224 3 1112 235 105 66 chr6 138571533 138572036 -43843206 + MLT1H1 LTR MaLR 1 523 -32 1456 205 82 42 chr6 138572301 138572730 -43842512 - LTR55 LTR ERV -102 446 1 244 83 0 28 chr6 138572730 138572766 -43842476 + MLT1H1 LTR MaLR 561 595 0 2290 81 0 3 chr6 138574337 138574653 -43840589 + AluSx SINE Alu 1 315 0 457 283 48 32 chr6 138574889 138575076 -43840166 - L3 LINE CR1 -113 1464 1275 697 223 158 46 chr6 138575632 138576049 -43839193 - L1MC/D LINE L1 -2027 5781 5318 225 299 90 8 chr6 138576249 138576383 -43838859 - L1P LINE L1 -1098 5048 4904 2085 124 3 3 chr6 138576602 138576908 -43838334 - AluJb SINE Alu -6 306 1 604 320 91 69 chr6 138577199 138578054 -43837188 - L1MC/D LINE L1 -2148 3998 3125 1707 118 0 4 chr6 138578800 138579038 -43836204 - AluSg/x SINE Alu -9 301 65 1537 271 22 22 chr6 138579141 138579554 -43835688 - MLT1J2 LTR MaLR -18 432 20 361 324 55 7 chr6 138579619 138579764 -43835478 - L2 LINE L2 0 3272 3121 669 174 25 0 chr6 138579783 138579904 -43835338 - Tigger7 DNA MER2_type 0 2487 2364 560 204 9 0 chr6 138579904 138580017 -43835225 - FLAM_A SINE Alu -6 136 23 761 92 46 0 chr6 138580021 138580151 -43835091 - Tigger7 DNA MER2_type -126 2361 2226 3966 165 9 18 chr6 138580152 138580838 -43834404 - Tigger7 DNA MER2_type -1651 836 157 21 0 0 0 chr6 138582034 138582055 -43833187 + AT_rich Low_complexity Low_complexity 1 21 0 814 231 12 0 chr6 138582093 138582262 -43832980 - AluJo SINE Alu -139 173 3 351 241 0 27 chr6 138582262 138582374 -43832868 + L1M4 LINE L1 2140 2248 -3898 910 231 39 134 chr6 138582472 138583107 -43832135 + L1M4 LINE L1 3121 3695 -2451 1635 189 40 0 chr6 138583109 138583405 -43831837 + AluJb SINE Alu 1 308 -4 533 238 7 0 chr6 138583405 138583548 -43831694 + GA-rich Low_complexity Low_complexity 1 144 0 211 139 0 47 chr6 138583549 138583592 -43831650 + (GGGAA)n Simple_repeat Simple_repeat 3 43 0 442 239 21 35 chr6 138583592 138583734 -43831508 + L1M4 LINE L1 3676 3815 -2331 327 282 99 38 chr6 138583952 138584038 -43831204 + L1M4 LINE L1 2245 2324 -3822 1899 149 78 0 chr6 138584038 138584373 -43830869 - MER46B DNA MER2_type 0 236 1 327 282 99 38 chr6 138584373 138584548 -43830694 + L1M4 LINE L1 2324 2522 -3624 233 203 0 31 chr6 138584972 138585036 -43830206 + T-rich Low_complexity Low_complexity 4 65 0 738 291 113 36 chr6 138585184 138585662 -43829580 - L1MC4a LINE L1 -1911 5897 5383 1122 294 71 16 chr6 138585979 138586595 -43828647 - L1ME3A LINE L1 -224 5946 5297 40 37 0 0 chr6 138586739 138586793 -43828449 + AT_rich Low_complexity Low_complexity 1 54 0 243 248 40 0 chr6 138587342 138587443 -43827799 + (TA)n Simple_repeat Simple_repeat 1 105 0 295 161 37 31 chr6 138587457 138587619 -43827623 + (TA)n Simple_repeat Simple_repeat 1 163 0 306 326 59 7 chr6 138587622 138587757 -43827485 + MIR3 SINE MIR 6 147 -61 5011 177 44 24 chr6 138588505 138589565 -43825677 - L1MC3 LINE L1 0 7785 6704 232 391 0 0 chr6 138590021 138590108 -43825134 + L2 LINE L2 3223 3309 -4 299 65 22 0 chr6 138590168 138590214 -43825028 + (TTG)n Simple_repeat Simple_repeat 2 48 0 180 111 0 0 chr6 138590977 138591004 -43824238 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 223 326 10 51 chr6 138591325 138591423 -43823819 - MIR SINE MIR 0 262 169 500 279 20 20 chr6 138591463 138591610 -43823632 - MIR SINE MIR -96 166 20 575 115 52 0 chr6 138593101 138593197 -43822045 + L1PA12 LINE L1 6066 6166 -2 23 0 0 0 chr6 138593197 138593220 -43822022 + AT_rich Low_complexity Low_complexity 1 23 0 514 287 152 40 chr6 138596189 138596611 -43818631 - L1ME LINE L1 -312 5809 5341 390 313 140 40 chr6 138596700 138597221 -43818021 - L1ME LINE L1 -906 5240 4668 305 305 49 22 chr6 138597316 138597542 -43817700 - L1ME LINE L1 -2591 3555 3324 267 376 20 10 chr6 138598539 138598640 -43816602 + L2 LINE L2 3166 3267 -5 222 196 0 0 chr6 138599098 138599144 -43816098 + (TGGG)n Simple_repeat Simple_repeat 3 48 0 2143 161 107 5 chr6 138600274 138600695 -43814547 + MLT2C2 LTR ERVL 1 464 0 621 281 15 40 chr6 138602475 138602674 -43812568 + MIR SINE MIR 52 245 -17 1891 154 17 35 chr6 138602682 138602880 -43812362 - MER44D DNA MER2_type -1882 609 409 2667 105 3 0 chr6 138602880 138603243 -43811999 + THE1B LTR MaLR 1 364 0 1891 154 17 35 chr6 138603243 138603389 -43811853 - MER44D DNA MER2_type -2082 409 1 215 200 0 0 chr6 138603781 138603821 -43811421 + MIR SINE MIR 111 150 -58 252 0 0 0 chr6 138604047 138604075 -43811167 + (TG)n Simple_repeat Simple_repeat 2 29 0 25 65 0 0 chr6 138604206 138604252 -43810990 + AT_rich Low_complexity Low_complexity 1 46 0 1009 204 83 57 chr6 138604312 138604748 -43810494 + L1MC5 LINE L1 7467 7913 -48 348 24 0 0 chr6 138604846 138604887 -43810355 + (TG)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr6 138605007 138605031 -43810211 + AT_rich Low_complexity Low_complexity 1 24 0 281 23 0 47 chr6 138605112 138605155 -43810087 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2005 116 3 11 chr6 138605157 138605441 -43809801 - AluSx SINE Alu -30 282 1 311 331 42 18 chr6 138605507 138605673 -43809569 + L1ME4a LINE L1 5410 5579 -542 576 284 81 21 chr6 138605686 138605971 -43809271 + L1ME4a LINE L1 5625 5926 -195 750 221 20 0 chr6 138607268 138607417 -43807825 + FRAM SINE Alu 1 152 -24 22 35 0 0 chr6 138607418 138607447 -43807795 + AT_rich Low_complexity Low_complexity 1 29 0 537 266 77 41 chr6 138608012 138608403 -43806839 - L1M4 LINE L1 -2128 4018 3614 198 0 0 0 chr6 138608538 138608560 -43806682 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 378 220 28 46 chr6 138608599 138608708 -43806534 - MLT1J2 LTR MaLR 0 450 344 6817 182 76 55 chr6 138609421 138611109 -43804133 + MER52A LTR ERV1 27 1749 -6 2317 80 7 0 chr6 138611374 138611663 -43803579 - AluSq SINE Alu -16 297 7 530 330 94 41 chr6 138611675 138612163 -43803079 - L1M4 LINE L1 -3104 3042 2529 2302 115 0 0 chr6 138612368 138612680 -43802562 - AluSx SINE Alu 0 312 1 319 176 44 88 chr6 138612693 138612714 -43802528 - MER46A DNA MER2_type -75 161 145 919 112 22 0 chr6 138612714 138612848 -43802394 + Tigger4(Zombi) DNA MER2_type 1 137 -2594 5694 104 21 12 chr6 138612851 138613704 -43801538 + Tigger4(Zombi) DNA MER2_type 1871 2731 0 295 248 12 24 chr6 138614201 138614364 -43800878 - L1MEc LINE L1 -6162 234 35 882 295 137 22 chr6 138614982 138615302 -43799940 - L2 LINE L2 0 3313 2926 2223 120 3 0 chr6 138615302 138615611 -43799631 + AluSx SINE Alu 1 310 -2 882 295 137 22 chr6 138615611 138615737 -43799505 - L2 LINE L2 -387 2926 2816 467 245 180 14 chr6 138615772 138615911 -43799331 - MER5B DNA MER1_type -8 170 9 186 266 28 64 chr6 138616007 138616116 -43799126 - L2 LINE L2 -165 3148 3044 2654 143 25 0 chr6 138616139 138616586 -43798656 + L1MB3 LINE L1 5713 6170 -13 21 0 0 0 chr6 138616595 138616616 -43798626 + AT_rich Low_complexity Low_complexity 1 21 0 395 155 12 24 chr6 138616620 138616704 -43798538 + L1MC1 LINE L1 6251 6333 0 252 337 61 10 chr6 138619595 138619693 -43795549 + L2 LINE L2 3150 3252 -20 2317 100 0 3 chr6 138619852 138620162 -43795080 + AluY SINE Alu 3 311 0 395 288 7 59 chr6 138620575 138620728 -43794514 - L2 LINE L2 0 3313 3169 1089 231 188 14 chr6 138620728 138621144 -43794098 + HsTC2 DNA Tc2 1 488 -1410 * 1180 206 62 25 chr6 138621128 138621449 -43793793 + HsTC2 DNA Tc2 1563 1895 -3 2310 287 174 24 chr6 138621466 138622868 -43792374 - L2 LINE L2 -175 3138 1526 1926 228 36 11 chr6 138622912 138623356 -43791886 + LTR40b LTR ERVL 8 462 0 408 371 6 22 chr6 138623362 138623540 -43791702 - L2 LINE L2 -2050 1264 1090 * 419 293 222 21 chr6 138623525 138623859 -43791383 - L2 LINE L2 -2349 965 565 2168 105 3 3 chr6 138624118 138624412 -43790830 - AluSx SINE Alu -18 294 1 453 323 96 82 chr6 138624432 138624797 -43790445 - L2 LINE L2 -2791 523 154 11963 119 25 0 chr6 138624898 138625509 -43789733 + Tigger1 DNA MER2_type 17 612 -1806 207 0 0 0 chr6 138625509 138625532 -43789710 + (TAA)n Simple_repeat Simple_repeat 2 24 0 11963 119 25 0 chr6 138625532 138626775 -43788467 + Tigger1 DNA MER2_type 612 1916 -502 1136 96 0 136 chr6 138626775 138626973 -43788269 + AluSq SINE Alu 1 171 -142 249 210 0 0 chr6 138627106 138627168 -43788074 + CT-rich Low_complexity Low_complexity 3 64 0 1523 164 64 33 chr6 138627531 138627860 -43787382 - MER1B DNA MER1_type 0 339 1 1189 191 26 109 chr6 138627860 138627917 -43787325 - MER58B DNA MER1_type -2099 321 261 1951 213 54 61 chr6 138627917 138628471 -43786771 - MLT2B3 LTR ERVL -4 550 1 1189 191 26 109 chr6 138628471 138628676 -43786566 - MER58B DNA MER1_type -2159 261 93 2041 152 0 0 chr6 138628676 138628995 -43786247 + AluSx SINE Alu 1 312 0 1189 191 26 109 chr6 138628995 138629081 -43786161 - MER58B DNA MER1_type -2327 93 1 1924 264 86 26 chr6 138629466 138630190 -43785052 + LTR41 LTR ERVL 1 767 -6 263 287 40 18 chr6 138630192 138630364 -43784878 - L1ME LINE L1 -533 5588 5410 2156 205 82 13 chr6 138630681 138631290 -43783952 - L1MC4 LINE L1 -126 7916 7266 307 276 35 55 chr6 138631298 138631555 -43783687 - L1MC4a LINE L1 -1275 6533 6282 1314 267 73 6 chr6 138631672 138632162 -43783080 - L1MC4a LINE L1 -1762 6046 5524 307 362 108 35 chr6 138632627 138632914 -43782328 + L1MEd LINE L1 80 387 -5732 374 299 60 57 chr6 138632967 138633368 -43781874 + L1MEd LINE L1 561 962 -5157 393 298 94 25 chr6 138633460 138633695 -43781547 - L1ME LINE L1 -5434 636 386 2387 260 63 48 chr6 138633846 138634410 -43780832 + L1ME LINE L1 425 979 -5150 2286 106 0 0 chr6 138634410 138634703 -43780539 + AluSg1 SINE Alu 1 293 -16 2387 260 63 48 chr6 138634703 138635635 -43779607 + L1ME LINE L1 979 1896 -4233 216 97 0 0 chr6 138635635 138635666 -43779576 + (TATG)n Simple_repeat Simple_repeat 3 33 0 2387 260 63 48 chr6 138635666 138635942 -43779300 + L1ME LINE L1 1896 2166 -3963 8080 125 15 21 chr6 138635942 138637249 -43777993 + HSMAR2 DNA Mariner 3 1301 -1 2387 260 63 48 chr6 138637249 138637505 -43777737 + L1ME LINE L1 2166 2469 -3660 2362 247 49 24 chr6 138637538 138637752 -43777490 + L1ME2 LINE L1 5341 5548 -786 2250 82 3 0 chr6 138637752 138638034 -43777208 + AluSq SINE Alu 3 285 -28 513 0 0 0 chr6 138638034 138638091 -43777151 + (CA)n Simple_repeat Simple_repeat 2 58 0 2362 247 49 24 chr6 138638091 138638684 -43776558 + L1ME2 LINE L1 5547 6330 -4 1277 124 96 5 chr6 138638706 138638915 -43776327 + MER30 DNA MER1_type 3 230 0 192 40 0 0 chr6 138638946 138638971 -43776271 + (T)n Simple_repeat Simple_repeat 1 25 0 273 370 69 17 chr6 138639137 138639310 -43775932 + MIR SINE MIR 31 212 -50 348 221 15 0 chr6 138639552 138639620 -43775622 - L2 LINE L2 -2 3311 3243 288 200 0 0 chr6 138639701 138639766 -43775476 + (CATA)n Simple_repeat Simple_repeat 2 66 0 215 323 90 68 chr6 138640158 138640291 -43774951 - L2 LINE L2 0 3272 3137 613 314 197 28 chr6 138640299 138641026 -43774216 - L2 LINE L2 -934 2380 1531 536 275 127 30 chr6 138641101 138641337 -43773905 + MIR SINE MIR 3 261 -1 344 297 0 40 chr6 138641471 138641619 -43773623 + L1ME LINE L1 5455 5596 -525 2554 34 0 3 chr6 138642462 138642756 -43772486 + AluY SINE Alu 1 293 -18 250 261 0 0 chr6 138642976 138643045 -43772197 - L1MC/D LINE L1 -2005 5803 5735 1384 167 32 16 chr6 138643352 138643603 -43771639 + AluJo SINE Alu 36 290 -22 365 317 67 6 chr6 138643752 138643916 -43771326 - MIR SINE MIR -13 249 76 639 289 28 6 chr6 138643920 138644100 -43771142 - MIR SINE MIR -53 209 26 2270 104 0 3 chr6 138644732 138645019 -43770223 - AluSp SINE Alu -25 288 3 287 318 65 0 chr6 138645022 138645176 -43770066 + L2 LINE L2 1920 2083 -1231 659 242 28 39 chr6 138645610 138645788 -43769454 - MER5B DNA MER1_type 0 178 3 293 299 112 52 chr6 138645801 138645935 -43769307 - MER5A DNA MER1_type -4 185 44 570 326 141 35 chr6 138646091 138646631 -43768611 + L2 LINE L2 2266 2862 -452 340 300 18 9 chr6 138646642 138646752 -43768490 + MER5A DNA MER1_type 74 184 -5 2078 107 22 41 chr6 138647032 138647350 -43767892 - AluSx SINE Alu 0 312 1 519 206 48 27 chr6 138647632 138647778 -43767464 - LTR67 LTR ERVL -1 556 408 438 20 0 0 chr6 138648026 138648077 -43767165 + (TG)n Simple_repeat Simple_repeat 2 52 0 1285 242 80 95 chr6 138648752 138649113 -43766129 - HAL1b LINE L1 0 1348 983 2407 91 0 7 chr6 138649113 138649422 -43765820 - AluSc SINE Alu -2 307 1 1285 242 80 95 chr6 138649422 138649454 -43765788 - HAL1b LINE L1 -365 983 952 1540 176 3 44 chr6 138649454 138649772 -43765470 + AluJo SINE Alu 5 310 0 1285 242 80 95 chr6 138649772 138650457 -43764785 - HAL1b LINE L1 -396 952 284 571 270 18 98 chr6 138651972 138652368 -43762874 + Charlie8 DNA MER1_type 51 414 -2003 248 286 0 0 chr6 138652372 138652442 -43762800 + Charlie8 DNA MER1_type 2343 2412 -5 3498 191 70 18 chr6 138652683 138653506 -43761736 + Charlie1 DNA MER1_type 1775 2653 -108 1773 168 0 11 chr6 138653506 138653786 -43761456 - AluJo SINE Alu -14 298 22 3498 191 70 18 chr6 138653786 138653886 -43761356 + Charlie1 DNA MER1_type 2653 2746 -15 237 222 16 16 chr6 138653917 138653980 -43761262 + (TA)n Simple_repeat Simple_repeat 1 63 0 2129 102 10 10 chr6 138653981 138654275 -43760967 - AluSx SINE Alu -18 294 1 480 273 77 82 chr6 138654294 138654646 -43760596 - L1MC4a LINE L1 -1878 5930 5581 471 306 39 39 chr6 138655395 138655653 -43759589 + L2 LINE L2 3055 3312 -1 2145 122 10 3 chr6 138655728 138656023 -43759219 + AluSg SINE Alu 1 297 -13 1202 146 10 44 chr6 138656368 138656573 -43758669 - AluSg/x SINE Alu -10 302 105 3028 120 46 29 chr6 138656728 138657246 -43757996 - MER1A DNA MER1_type 0 529 3 791 189 41 6 chr6 138657506 138657689 -43757553 + MLT1E LTR MaLR 426 592 -1 348 291 19 10 chr6 138658115 138658218 -43757024 + MIR SINE MIR 159 262 0 317 312 49 39 chr6 138658894 138659099 -43756143 - L2 LINE L2 -8 3305 3099 285 227 103 62 chr6 138659171 138659268 -43755974 + L2 LINE L2 3205 3305 -8 2925 134 20 14 chr6 138659277 138659777 -43755465 - L1MB3 LINE L1 -10 6173 5671 252 0 0 0 chr6 138660169 138660197 -43755045 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1639 153 26 8 chr6 138660206 138660474 -43754768 - AluJb SINE Alu -34 278 6 399 309 193 10 chr6 138660634 138660841 -43754401 - MIR SINE MIR 0 262 18 411 375 85 20 chr6 138661083 138661638 -43753604 - L2 LINE L2 -1232 2082 1492 1450 169 8 4 chr6 138661679 138661928 -43753314 - AluJo SINE Alu 0 312 63 366 250 34 0 chr6 138663045 138663133 -43752109 - L2 LINE L2 -6 3307 3217 3759 170 17 7 chr6 138663134 138663856 -43751386 + L1MA7 LINE L1 5325 6053 -238 675 98 38 45 chr6 138663857 138663989 -43751253 + L1MA7 LINE L1 6161 6291 0 830 223 75 0 chr6 138664015 138664203 -43751039 - MIR SINE MIR -10 252 51 249 174 0 22 chr6 138664810 138664856 -43750386 - MLT1K LTR MaLR -356 232 188 1791 179 3 7 chr6 138665907 138666209 -43749033 + AluJb SINE Alu 1 301 -11 304 320 59 26 chr6 138666242 138666395 -43748847 - MIR3 SINE MIR -31 177 20 2059 131 3 0 chr6 138666510 138666815 -43748427 - AluSq SINE Alu 0 307 2 297 283 83 8 chr6 138667902 138668022 -43747220 + L2 LINE L2 3178 3306 -7 204 40 0 0 chr6 138669710 138669735 -43745507 + (CGG)n Simple_repeat Simple_repeat 1 25 0 290 334 117 2 chr6 138674060 138674224 -43741018 + MIR3 SINE MIR 9 191 -63 384 294 94 6 chr6 138676768 138676938 -43738304 - MIR SINE MIR -18 244 60 203 204 68 0 chr6 138677812 138677856 -43737386 - MIR SINE MIR -10 252 206 1674 120 0 126 chr6 138680381 138680707 -43734535 - AluSg SINE Alu -15 285 1 535 267 83 79 chr6 138680743 138680929 -43734313 - MIR SINE MIR -16 246 57 2396 83 0 16 chr6 138680929 138681243 -43733999 + AluY SINE Alu 1 309 -2 535 267 83 79 chr6 138681243 138681296 -43733946 - MIR SINE MIR -205 57 6 279 205 8 49 chr6 138681360 138681450 -43733792 + MIR SINE MIR 114 198 -64 34 89 0 0 chr6 138682366 138682456 -43732786 + AT_rich Low_complexity Low_complexity 1 90 0 1477 158 85 11 chr6 138682465 138682737 -43732505 - AluJo SINE Alu -17 295 4 706 214 0 0 chr6 138682866 138682997 -43732245 + FRAM SINE Alu 16 146 -30 333 300 12 62 chr6 138683097 138683257 -43731985 - MIR SINE MIR -6 256 105 1759 163 0 7 chr6 138683257 138683546 -43731696 + AluJb SINE Alu 1 287 -25 22 35 0 0 chr6 138685691 138685720 -43729522 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chr6 138686529 138686565 -43728677 + (TG)n Simple_repeat Simple_repeat 1 36 0 424 259 106 29 chr6 138687449 138687638 -43727604 + MIR SINE MIR 10 211 -51 5874 156 14 3 chr6 138688187 138689372 -43725870 - L1MA5 LINE L1 -2 6298 5100 436 219 94 94 chr6 138689695 138690015 -43725227 - L1MC5 LINE L1 -165 7796 7477 5046 183 133 29 chr6 138690030 138690554 -43724688 - Charlie1a DNA MER1_type -1310 1451 983 2305 92 0 13 chr6 138690554 138690859 -43724383 + AluSq SINE Alu 1 301 -12 5046 183 133 29 chr6 138690859 138691648 -43723594 - Charlie1a DNA MER1_type -1778 983 1 1627 214 109 101 chr6 138691652 138692510 -43722732 - L1MC5 LINE L1 -528 7433 6566 23 33 0 0 chr6 138743541 138743571 -43671671 + AT_rich Low_complexity Low_complexity 1 30 0 206 357 83 0 chr6 138744686 138744770 -43670472 + MIR SINE MIR 115 205 -57 26 0 0 0 chr6 138745396 138745422 -43669820 + AT_rich Low_complexity Low_complexity 1 26 0 1298 114 68 0 chr6 138745935 138746171 -43669071 + L1MA9 LINE L1 6047 6298 -14 1695 227 17 5 chr6 138746242 138746648 -43668594 - L1 LINE L1 -1717 4429 4019 973 159 28 0 chr6 138746648 138746818 -43668424 + L1PA16 LINE L1 5979 6159 -7 21 57 0 0 chr6 138746863 138746898 -43668344 + AT_rich Low_complexity Low_complexity 1 35 0 405 309 135 22 chr6 138747038 138747526 -43667716 + L1MC4a LINE L1 5379 5921 -1887 438 269 106 53 chr6 138747608 138747872 -43667370 - L2 LINE L2 0 3313 3036 2477 124 40 26 chr6 138748634 138749062 -43666180 + Tigger2a DNA MER2_type 1 434 0 216 0 0 0 chr6 138749172 138749196 -43666046 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 185 313 31 0 chr6 138751826 138751890 -43663352 - L2 LINE L2 -68 3245 3180 859 233 105 95 chr6 138752062 138752556 -43662686 - MLT1J LTR MaLR -8 503 5 558 69 9 138 chr6 138753098 138753214 -43662028 + HY3 scRNA scRNA 1 101 0 323 373 94 14 chr6 138753679 138753891 -43661351 + L3 LINE CR1 1028 1256 -321 527 269 93 37 chr6 138753943 138754159 -43661083 + Charlie8 DNA MER1_type 37 264 -2153 450 241 54 78 chr6 138754382 138754548 -43660694 + L3 LINE CR1 1350 1511 -66 14308 73 8 3 chr6 138754644 138757320 -43657922 - L1PA7 LINE L1 -15 6139 3437 300 245 204 61 chr6 138758650 138758797 -43656445 - L1MD2 LINE L1 -111 6248 6081 2209 102 42 65 chr6 138758928 138759329 -43655913 + L1MA2 LINE L1 5907 6298 -6 4182 210 54 49 chr6 138759360 138760229 -43655013 - L1MDb LINE L1 -4002 2404 1541 2286 146 22 0 chr6 138760229 138760585 -43654657 + THE1B LTR MaLR 1 364 0 4182 210 54 49 chr6 138760585 138761641 -43653601 - L1MDb LINE L1 -4865 1541 467 187 133 0 0 chr6 138761737 138761767 -43653475 - L3 LINE CR1 -708 869 840 266 313 125 6 chr6 138761835 138762011 -43653231 + L3 LINE CR1 516 712 -865 807 298 49 0 chr6 138762263 138762488 -43652754 + MIR SINE MIR 6 241 -21 2332 64 0 0 chr6 138762609 138762934 -43652308 + AluY SINE Alu 1 325 0 602 246 118 28 chr6 138763221 138763432 -43651810 - MIR SINE MIR -2 260 31 256 243 40 0 chr6 138764134 138764208 -43651034 + L1ME1 LINE L1 6088 6164 -2 938 249 38 38 chr6 138764219 138764645 -43650597 + L1MC5 LINE L1 7507 7932 -29 2946 155 22 16 chr6 138765001 138765557 -43649685 + L1MC1 LINE L1 5775 6333 0 520 138 0 11 chr6 138765561 138765655 -43649587 + THE1C-int LTR MaLR 1488 1580 0 2427 99 59 3 chr6 138765655 138766010 -43649232 + THE1C LTR MaLR 1 375 0 210 217 22 0 chr6 138768026 138768072 -43647170 - MIR SINE MIR -85 123 77 1155 192 90 8 chr6 138768180 138768425 -43646817 + AluJo SINE Alu 4 268 -44 207 0 0 0 chr6 138768438 138768461 -43646781 + (TAAAAA)n Simple_repeat Simple_repeat 6 28 0 521 303 74 17 chr6 138768491 138768722 -43646520 + MIR SINE MIR 5 248 -14 305 333 40 0 chr6 138770347 138770446 -43644796 - L2 LINE L2 -19 3253 3151 3476 139 12 2 chr6 138771479 138772039 -43643203 - L1PB3 LINE L1 -3 6151 5586 297 128 0 0 chr6 138772443 138772490 -43642752 + (T)n Simple_repeat Simple_repeat 1 47 0 230 358 135 39 chr6 138772812 138773376 -43641866 + L2 LINE L2 2261 2878 -436 606 291 131 54 chr6 138773416 138773845 -43641397 + MLT1L LTR MaLR 142 603 -12 1033 308 152 4 chr6 138774144 138774778 -43640464 - L2 LINE L2 -3 3310 2579 329 269 58 10 chr6 138776187 138776291 -43638951 + L2 LINE L2 3154 3262 -10 221 211 70 18 chr6 138777372 138777429 -43637813 - MIR3 SINE MIR -5 203 144 226 286 0 0 chr6 138778446 138778502 -43636740 - MIR SINE MIR -137 125 70 237 180 0 0 chr6 138778812 138778862 -43636380 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 246 32 0 0 chr6 138779144 138779175 -43636067 + (TC)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr6 138779537 138779559 -43635683 + AT_rich Low_complexity Low_complexity 1 22 0 486 299 118 23 chr6 138779973 138780619 -43634623 + L1M4 LINE L1 4141 4847 -1299 8885 185 5 5 chr6 138780675 138782448 -43632794 - L1PA12 LINE L1 -1052 6532 4760 28558 33 1 2 chr6 138782452 138786863 -43628379 - L1PA4 LINE L1 -1 6154 1747 14522 176 27 9 chr6 138786863 138790895 -43624347 - L1PA12 LINE L1 -2803 4781 667 275 410 60 0 chr6 138791213 138791413 -43623829 - MIR SINE MIR -2 260 49 288 313 71 18 chr6 138793921 138794033 -43621209 - MIR SINE MIR -55 207 90 308 331 59 7 chr6 138794464 138794600 -43620642 - MIR SINE MIR -16 246 104 393 105 0 0 chr6 138795086 138795143 -43620099 - MSTA LTR MaLR 0 428 372 5627 220 26 16 chr6 138795143 138796435 -43618807 - L1 LINE L1 -1905 4241 2929 2143 112 3 10 chr6 138796435 138796730 -43618512 - AluSp SINE Alu -20 293 1 5627 220 26 16 chr6 138796730 138796949 -43618293 - L1 LINE L1 -3217 2929 2714 4769 146 54 7 chr6 138796947 138797853 -43617389 - L1PBa LINE L1 -5914 949 1 * 2366 134 13 13 chr6 138797855 138798253 -43616989 - MSTA LTR MaLR -29 399 1 727 287 85 59 chr6 138798326 138798634 -43616608 + HAL1b LINE L1 222 552 -796 2350 123 17 6 chr6 138798634 138798993 -43616249 + THE1B LTR MaLR 2 364 0 727 287 85 59 chr6 138798993 138799227 -43616015 + HAL1b LINE L1 552 778 -570 338 210 24 57 chr6 138799334 138799458 -43615784 - L1MC4 LINE L1 -1 8041 7922 213 309 0 0 chr6 138799476 138799531 -43615711 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 519 275 139 55 chr6 138801997 138802195 -43613047 - LTR33A LTR ERVL -14 509 329 495 209 76 19 chr6 138802195 138802300 -43612942 - MER81 DNA DNA -2 112 2 519 275 139 55 chr6 138802300 138802570 -43612672 - LTR33A LTR ERVL -194 329 2 232 308 218 6 chr6 138802570 138802726 -43612516 + MIR SINE MIR 60 248 -14 248 245 64 11 chr6 138803704 138803798 -43611444 + MLT1K LTR MaLR 482 580 -8 2141 113 0 13 chr6 138803806 138804106 -43611136 + AluSx SINE Alu 4 299 -13 877 250 27 12 chr6 138804270 138804526 -43610716 + MIR SINE MIR 1 260 -2 274 280 65 9 chr6 138804615 138804722 -43610520 + MIR SINE MIR 11 123 -139 319 322 27 20 chr6 138804869 138805015 -43610227 - MER5B DNA MER1_type 0 178 32 25 0 0 0 chr6 138805099 138805124 -43610118 + AT_rich Low_complexity Low_complexity 1 25 0 1811 124 44 72 chr6 138805133 138805319 -43609923 + THE1B LTR MaLR 1 174 -190 2156 81 4 0 chr6 138805319 138805592 -43609650 - AluY SINE Alu -1 310 37 1811 124 44 72 chr6 138805592 138805767 -43609475 + THE1B LTR MaLR 174 352 -12 190 341 94 0 chr6 138805914 138805999 -43609243 - MIR3 SINE MIR -106 102 10 1922 200 55 44 chr6 138806034 138806583 -43608659 - MER74B LTR ERVL -10 612 58 26 30 0 0 chr6 138807056 138807089 -43608153 + AT_rich Low_complexity Low_complexity 1 33 0 247 340 65 29 chr6 138807605 138807779 -43607463 + MIR SINE MIR 34 217 -45 2243 120 0 0 chr6 138807836 138808136 -43607106 - AluSx SINE Alu -10 302 3 209 353 10 39 chr6 138809859 138809961 -43605281 + MIR SINE MIR 48 146 -116 446 293 32 0 chr6 138809995 138810118 -43605124 - L2 LINE L2 -2 3311 3185 1921 155 137 13 chr6 138810220 138810601 -43604641 - MSTA LTR MaLR 0 428 1 447 313 115 11 chr6 138810810 138810992 -43604250 + MIR SINE MIR 12 212 -50 2188 118 3 3 chr6 138811078 138811382 -43603860 - AluSx SINE Alu -8 304 1 184 125 0 75 chr6 138812195 138812235 -43603007 - MIR SINE MIR -67 141 105 600 293 94 64 chr6 138812539 138813040 -43602202 + L1ME3A LINE L1 4882 5397 -749 740 220 6 6 chr6 138813050 138813218 -43602024 + MER101 LTR ERV1 11 178 -296 677 226 40 58 chr6 138813329 138813555 -43601687 + MER101 LTR ERV1 253 474 0 939 294 25 25 chr6 138813564 138814037 -43601205 + L1ME3A LINE L1 5413 5885 -285 193 314 12 23 chr6 138814322 138814408 -43600834 - MIR SINE MIR -4 258 174 626 288 7 7 chr6 138814490 138814643 -43600599 + MIR3 SINE MIR 28 180 -28 31 26 0 0 chr6 138814672 138814710 -43600532 + AT_rich Low_complexity Low_complexity 1 38 0 189 264 35 46 chr6 138815517 138815604 -43599638 - MIR SINE MIR -6 256 171 362 308 122 77 chr6 138815680 138815749 -43599493 + L1 LINE L1 2255 2319 -3827 1508 136 105 67 chr6 138815749 138815801 -43599441 - THE1C LTR MaLR 0 375 326 2506 81 0 0 chr6 138815801 138816109 -43599133 - AluY SINE Alu -3 308 1 1508 136 105 67 chr6 138816109 138816417 -43598825 - THE1C LTR MaLR -49 326 1 362 308 122 77 chr6 138816417 138816478 -43598764 + L1 LINE L1 2319 2376 -3770 1991 221 121 71 chr6 138816478 138817265 -43597977 + LTR1B LTR ERV1 1 826 0 362 308 122 77 chr6 138817265 138817361 -43597881 + L1 LINE L1 2376 2487 -3659 1612 44 5 10 chr6 138818232 138818438 -43596804 + L1PA5 LINE L1 5947 6151 -3 2590 53 0 0 chr6 138819889 138820211 -43595031 + L1PA8 LINE L1 5850 6171 -1 234 62 0 0 chr6 138820242 138820274 -43594968 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 413 225 83 0 chr6 138820290 138820410 -43594832 + MIR SINE MIR 133 262 0 231 152 0 0 chr6 138820541 138820587 -43594655 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 537 278 35 0 chr6 138820613 138820757 -43594485 - MLT1A2 LTR MaLR -11 363 215 318 263 103 67 chr6 138820781 138821169 -43594073 - L1ME LINE L1 -411 5710 5309 23 33 0 0 chr6 138821345 138821375 -43593867 + AT_rich Low_complexity Low_complexity 1 30 0 5916 122 18 29 chr6 138821375 138822288 -43592954 - L1MA2 LINE L1 -97 6207 5286 2722 10 0 0 chr6 138822288 138822588 -43592654 + AluYa5 SINE Alu 1 300 -11 5916 122 18 29 chr6 138822588 138823691 -43591551 - L1MA2 LINE L1 -1018 5286 4195 472 304 129 0 chr6 138823775 138823969 -43591273 - L3 LINE CR1 -819 758 540 25 31 0 0 chr6 138824202 138824234 -43591008 + AT_rich Low_complexity Low_complexity 1 32 0 351 255 143 51 chr6 138824576 138824792 -43590450 - L1ME LINE L1 -348 5773 5538 316 202 266 0 chr6 138825003 138825097 -43590145 - MER5A DNA MER1_type -29 160 42 2210 138 0 0 chr6 138825527 138825831 -43589411 - AluSx SINE Alu -8 304 1 2326 99 16 3 chr6 138826429 138826732 -43588510 + AluSg SINE Alu 1 307 -3 227 232 125 48 chr6 138826844 138827012 -43588230 - L1ME LINE L1 -303 5818 5638 830 173 110 42 chr6 138828607 138828798 -43586444 + MER20 DNA MER1_type 16 219 0 26 0 0 0 chr6 138829895 138829921 -43585321 + AT_rich Low_complexity Low_complexity 1 26 0 26 62 0 15 chr6 138830539 138830587 -43584655 + AT_rich Low_complexity Low_complexity 1 49 -15 189 74 0 0 chr6 138830587 138830614 -43584628 + (TA)n Simple_repeat Simple_repeat 2 28 0 26 62 0 15 chr6 138830614 138830630 -43584612 + AT_rich Low_complexity Low_complexity 49 64 0 2049 156 3 0 chr6 138830774 138831075 -43584167 - AluJb SINE Alu -10 302 1 488 182 57 8 chr6 138831075 138831203 -43584039 + L1ME2 LINE L1 1810 2023 -4487 2715 231 45 23 chr6 138831241 138832908 -43582334 + L1ME2 LINE L1 4562 6339 -105 2130 112 0 54 chr6 138832908 138833222 -43582020 + AluSx SINE Alu 1 297 -15 2715 231 45 23 chr6 138833222 138833318 -43581924 + L1ME2 LINE L1 6339 6431 -13 2352 103 0 0 chr6 138833537 138833837 -43581405 + AluSx SINE Alu 1 300 -12 1843 188 25 3 chr6 138834058 138834414 -43580828 + L1PA16 LINE L1 5803 6166 0 8941 136 12 19 chr6 138834443 138836705 -43578537 + L1PA11 LINE L1 3906 6172 -2 236 302 174 47 chr6 138837615 138837787 -43577455 - MIR SINE MIR -37 225 32 372 145 0 60 chr6 138838326 138838409 -43576833 + LTR38B LTR ERV1 1 78 -532 2365 66 41 0 chr6 138838409 138838727 -43576515 + L1PA7 LINE L1 5820 6150 -4 462 120 11 0 chr6 138838731 138838823 -43576419 + Charlie5 DNA MER1_type 2445 2537 -75 24 0 0 0 chr6 138838866 138838890 -43576352 + AT_rich Low_complexity Low_complexity 1 24 0 6464 24 14 0 chr6 138838890 138839689 -43575553 - L1PA4 LINE L1 -3 6152 5343 440 259 0 0 chr6 138839718 138839830 -43575412 + LTR38 LTR ERV1 64 175 -381 2387 60 3 0 chr6 138839830 138840129 -43575113 - AluY SINE Alu -11 300 1 739 91 0 16 chr6 138840129 138840250 -43574992 - AluY SINE Alu -3 308 190 1092 233 56 51 chr6 138840250 138840641 -43574601 + LTR38 LTR ERV1 164 556 0 215 266 139 13 chr6 138840643 138840722 -43574520 - L2 LINE L2 -22 3291 3203 796 261 60 8 chr6 138841805 138842039 -43573203 + MIR SINE MIR 8 253 -9 182 257 0 0 chr6 138842198 138842233 -43573009 + L3 LINE CR1 1518 1552 -25 285 311 43 46 chr6 138842250 138842405 -43572837 + MIR SINE MIR 18 170 -68 1639 235 161 26 chr6 138843788 138844370 -43570872 + MLT2F LTR ERVL 3 663 0 3430 110 3 86 chr6 138844580 138845199 -43570043 - L1PA15 LINE L1 -5 6160 5593 2020 147 0 0 chr6 138845209 138845516 -43569726 - AluSc SINE Alu 0 309 3 41503 47 1 2 chr6 138845543 138851695 -43563547 - L1PA4 LINE L1 -3 6152 4 2986 221 55 16 chr6 138851698 138852497 -43562745 + ERVL LTR ERVL 4587 5416 -348 1839 250 58 34 chr6 138852749 138853317 -43561925 + MLT2F LTR ERVL 10 591 -72 1640 154 13 102 chr6 138853361 138853743 -43561499 + MER7A DNA MER2_type 1 346 0 231 36 0 0 chr6 138853749 138853777 -43561465 + (CA)n Simple_repeat Simple_repeat 1 28 0 181 352 19 0 chr6 138853778 138853832 -43561410 + L2 LINE L2 3209 3263 -9 1521 212 114 68 chr6 138853872 138854433 -43560809 - MLT1E2 LTR MaLR -35 589 3 186 43 0 0 chr6 138854969 138854992 -43560250 + (T)n Simple_repeat Simple_repeat 1 23 0 334 232 0 14 chr6 138857134 138857203 -43558039 + MIR SINE MIR 195 262 0 1224 207 207 14 chr6 138858994 138859352 -43555890 + MER31B LTR ERV1 1 427 -39 391 326 10 41 chr6 138859370 138859566 -43555676 - L2 LINE L2 -440 2874 2685 455 0 18 0 chr6 138861922 138861977 -43553265 + (CA)n Simple_repeat Simple_repeat 1 56 0 2161 160 64 17 chr6 138861997 138862404 -43552838 + MSTB LTR MaLR 1 426 0 440 285 136 55 chr6 138862612 138862847 -43552395 - MIR SINE MIR -7 255 2 242 196 5 0 chr6 138863700 138863769 -43551473 - MLT1J1 LTR MaLR -303 181 97 284 358 89 14 chr6 138864148 138864289 -43550953 - MIR3 SINE MIR -23 185 34 370 300 21 29 chr6 138865024 138865164 -43550078 + MIR3 SINE MIR 38 176 -32 431 206 53 59 chr6 138865226 138865396 -43549846 - MLT2E LTR ERVL -2 626 458 855 236 104 62 chr6 138865462 138865771 -43549471 - MLT2E LTR ERVL -306 322 1 365 153 14 0 chr6 138866128 138866200 -43549042 + GA-rich Low_complexity Low_complexity 1 73 0 180 258 0 48 chr6 138867174 138867236 -43548006 + L2 LINE L2 3182 3240 -32 1117 182 5 23 chr6 138867701 138867921 -43547321 - MER20 DNA MER1_type -1 218 3 291 333 133 12 chr6 138867945 138868110 -43547132 + MER5A DNA MER1_type 2 186 -3 336 250 23 11 chr6 138868954 138869042 -43546200 - MIR SINE MIR -63 199 111 2191 99 0 0 chr6 138869598 138869925 -43545317 + AluSx SINE Alu 1 327 0 195 184 0 0 chr6 138870126 138870164 -43545078 + GA-rich Low_complexity Low_complexity 1 38 0 2304 92 0 32 chr6 138870372 138870688 -43544554 - AluSx SINE Alu -6 306 1 4090 103 57 6 chr6 138871298 138871930 -43543312 + MER4A LTR ERV1 1 664 0 624 227 140 50 chr6 138874816 138875296 -43539946 + L1MC5 LINE L1 7261 7783 -178 234 91 0 0 chr6 138875819 138875852 -43539390 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 276 360 40 0 chr6 138876237 138876337 -43538905 + L2 LINE L2 3156 3259 -13 1199 275 139 15 chr6 138876570 138877036 -43538206 - L2 LINE L2 -787 2527 2004 215 271 17 0 chr6 138878474 138878533 -43536709 - L2 LINE L2 -4 3268 3209 26 0 0 0 chr6 138878906 138878932 -43536310 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr6 138879530 138879555 -43535687 + AT_rich Low_complexity Low_complexity 1 25 0 208 225 0 0 chr6 138879856 138879896 -43535346 + CT-rich Low_complexity Low_complexity 4 43 0 920 95 0 0 chr6 138880762 138880878 -43534364 - AluSx SINE Alu -1 309 194 1059 99 14 0 chr6 138880880 138881022 -43534220 - AluSx SINE Alu -168 145 2 1694 178 62 22 chr6 138881222 138881593 -43533649 + MLT1B LTR MaLR 1 386 -4 2326 92 10 3 chr6 138882114 138882419 -43532823 + AluSq SINE Alu 1 307 -6 241 241 32 158 chr6 138882740 138882898 -43532344 - MIR3 SINE MIR -2 206 69 631 160 64 70 chr6 138882974 138883130 -43532112 + MLT1B LTR MaLR 3 157 -233 21 57 0 0 chr6 138883295 138883330 -43531912 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr6 138887078 138887116 -43528126 + AT_rich Low_complexity Low_complexity 1 38 0 267 31 0 0 chr6 138887168 138887200 -43528042 + (CA)n Simple_repeat Simple_repeat 1 32 0 297 363 155 19 chr6 138887311 138887988 -43527254 + L2 LINE L2 1873 2641 -673 202 226 0 75 chr6 138888501 138888554 -43526688 + L2 LINE L2 3263 3311 -2 1725 163 12 35 chr6 138890259 138890578 -43524664 + AluJo SINE Alu 1 312 0 186 292 15 0 chr6 138890716 138890781 -43524461 - L3 LINE CR1 -670 907 842 558 211 81 25 chr6 138890907 138891068 -43524174 - MIR SINE MIR -30 232 63 662 282 68 28 chr6 138891433 138891685 -43523557 - L3 LINE CR1 -742 835 574 225 378 169 14 chr6 138891780 138891925 -43523317 - L3 LINE CR1 -998 579 458 745 175 0 36 chr6 138891925 138892062 -43523180 + FLAM_C SINE Alu 1 132 -1 225 378 169 14 chr6 138892062 138892265 -43522977 - L3 LINE CR1 -1119 458 177 403 275 125 12 chr6 138892783 138892943 -43522299 - MIR3 SINE MIR -12 196 19 343 163 88 12 chr6 138892966 138893046 -43522196 + L2 LINE L2 3227 3312 -1 321 392 42 17 chr6 138893078 138893318 -43521924 - L2 LINE L2 -50 3222 2977 2422 80 0 3 chr6 138893773 138894074 -43521168 + AluSq SINE Alu 1 300 -13 534 241 86 37 chr6 138894245 138894432 -43520810 + MIR SINE MIR 33 228 -34 1875 167 58 6 chr6 138896818 138897165 -43518077 + MLT1A1 LTR MaLR 1 365 0 424 353 74 29 chr6 138897295 138897646 -43517596 - L1M4 LINE L1 -837 5309 4943 1620 85 0 0 chr6 138897772 138897971 -43517271 - AluSx SINE Alu -113 199 1 311 291 32 66 chr6 138898163 138898589 -43516653 - L1P LINE L1 -1682 4464 4063 294 352 8 0 chr6 138898717 138898842 -43516400 + GA-rich Low_complexity Low_complexity 4 129 0 697 269 78 66 chr6 138899322 138899873 -43515369 + L1ME4a LINE L1 5315 5867 -254 353 260 169 28 chr6 138901412 138901589 -43513653 - MIR SINE MIR -54 208 7 284 298 197 27 chr6 138902811 138902999 -43512243 - MIR SINE MIR -6 256 37 21 36 0 0 chr6 138903155 138903183 -43512059 + AT_rich Low_complexity Low_complexity 1 28 0 303 232 101 20 chr6 138903749 138903848 -43511394 + L1ME4a LINE L1 5774 5880 -241 2044 142 7 0 chr6 138904644 138904939 -43510303 + AluSx SINE Alu 1 297 -15 4351 142 38 39 chr6 138904939 138905674 -43509568 + L1MA9 LINE L1 5432 6167 -145 234 0 0 0 chr6 138905674 138905700 -43509542 + (CA)n Simple_repeat Simple_repeat 1 26 0 4351 142 38 39 chr6 138905700 138905816 -43509426 + L1MA9 LINE L1 6167 6282 -30 765 253 21 11 chr6 138905924 138906110 -43509132 + MER5A DNA MER1_type 2 189 0 1207 272 42 3 chr6 138906635 138906966 -43508276 + MLT1I LTR MaLR 66 409 0 189 250 73 15 chr6 138906967 138907035 -43508207 - MIR SINE MIR -100 162 91 1518 161 31 86 chr6 138907049 138907435 -43507807 + MLT1A1 LTR MaLR 1 365 0 5202 127 4 4 chr6 138907615 138908439 -43506803 + L1MA4A LINE L1 5480 6303 0 285 293 85 19 chr6 138908451 138908557 -43506685 - MIR SINE MIR -148 114 2 275 301 96 13 chr6 138908570 138908726 -43506516 + MIR SINE MIR 26 194 -68 830 323 170 15 chr6 138909971 138910807 -43504435 - L2 LINE L2 -1 3312 2339 396 178 237 37 chr6 138912326 138912461 -43502781 + L2 LINE L2 3147 3308 -5 2333 106 0 0 chr6 138912759 138913061 -43502181 - AluSx SINE Alu -10 302 1 491 286 285 45 chr6 138913301 138913877 -43501365 - L2 LINE L2 -337 2977 2264 222 167 48 0 chr6 138913878 138913920 -43501322 + L2 LINE L2 2292 2335 -979 253 127 73 18 chr6 138913985 138914040 -43501202 - L2 LINE L2 -1042 2272 2215 2201 226 277 34 chr6 138914903 138915857 -43499385 + L1MC4 LINE L1 6713 7898 -144 22 0 0 0 chr6 138915889 138915911 -43499331 + AT_rich Low_complexity Low_complexity 1 22 0 2206 122 3 0 chr6 138916029 138916324 -43498918 - AluSx SINE Alu -16 296 1 753 251 113 66 chr6 138917951 138918377 -43496865 - LTR16B LTR ERVL 0 464 19 242 313 123 80 chr6 138918939 138919239 -43496003 + L2 LINE L2 2957 3269 -3 292 254 56 48 chr6 138920637 138920763 -43494479 + L1ME3A LINE L1 5825 5951 -219 6300 83 12 10 chr6 138921773 138923541 -43491701 + L1PA13 LINE L1 4372 6157 -6 286 285 163 38 chr6 138925256 138925673 -43489569 + L1ME LINE L1 5260 5728 -2080 660 99 50 14 chr6 138925679 138925820 -43489422 + GA-rich Low_complexity Low_complexity 2 147 0 255 288 124 0 chr6 138925848 138926001 -43489241 + L1ME LINE L1 5721 5892 -229 255 214 51 41 chr6 138926053 138926151 -43489091 + L1MEd LINE L1 298 396 -5976 2089 109 0 15 chr6 138926760 138927089 -43488153 + L1PB1 LINE L1 5459 5782 -369 240 184 0 0 chr6 138927102 138927151 -43488091 + (TA)n Simple_repeat Simple_repeat 2 50 0 2285 143 0 6 chr6 138927151 138927516 -43487726 + L1PB1 LINE L1 5781 6143 -8 261 205 12 36 chr6 138927519 138927602 -43487640 + A-rich Low_complexity Low_complexity 4 84 0 26 0 0 0 chr6 138927650 138927676 -43487566 + AT_rich Low_complexity Low_complexity 1 26 0 323 302 69 44 chr6 138927747 138928217 -43487025 + L1MEd LINE L1 1266 1687 -4697 4969 125 16 30 chr6 138928409 138929246 -43485996 + L1PA16 LINE L1 5342 6166 0 43 35 0 0 chr6 138929296 138929353 -43485889 + AT_rich Low_complexity Low_complexity 1 57 0 349 274 104 25 chr6 138929591 138929832 -43485410 + L1MEd LINE L1 2475 2734 -3648 240 198 107 58 chr6 138929976 138930097 -43485145 + L1MC/D LINE L1 5665 5791 -2017 209 213 33 16 chr6 138930547 138930608 -43484634 + (TA)n Simple_repeat Simple_repeat 2 63 0 219 325 75 8 chr6 138932233 138932353 -43482889 + MIR3 SINE MIR 81 208 0 218 354 87 28 chr6 138934229 138934585 -43480657 - L2 LINE L2 -13 3300 2924 449 285 106 7 chr6 138934983 138935134 -43480108 - MIR SINE MIR -49 213 48 2550 71 0 3 chr6 138935168 138935479 -43479763 + AluY SINE Alu 1 310 -1 937 200 118 0 chr6 138936150 138936345 -43478897 + MER20 DNA MER1_type 1 218 -1 230 301 89 16 chr6 138936666 138936789 -43478453 - MIR SINE MIR -50 212 81 293 280 19 154 chr6 138937882 138938096 -43477146 + MIR3 SINE MIR 16 200 -8 27 49 0 0 chr6 138938196 138938237 -43477005 + AT_rich Low_complexity Low_complexity 1 41 0 280 202 294 8 chr6 138938936 138939055 -43476187 - L3b LINE CR1 -329 1254 1102 2174 114 7 0 chr6 138939638 138939936 -43475306 + AluSx SINE Alu 1 300 -12 1515 209 44 0 chr6 138942599 138942896 -43472346 + AluJo SINE Alu 1 310 -2 1994 152 0 7 chr6 138943065 138943375 -43471867 - AluSx SINE Alu -4 308 1 261 331 60 4 chr6 138944933 138945097 -43470145 - MIR SINE MIR -21 241 64 189 0 0 0 chr6 138945478 138945499 -43469743 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1014 171 0 12 chr6 138946210 138946380 -43468862 - FRAM SINE Alu -16 160 1 586 271 164 23 chr6 138947221 138947531 -43467711 + L2 LINE L2 2010 2363 -951 2605 133 3 3 chr6 138947544 138947926 -43467316 + MER72 LTR ERV1 308 689 -33 1855 176 74 37 chr6 138948024 138948404 -43466838 + MSTD LTR MaLR 3 396 0 2292 90 3 7 chr6 138948468 138948769 -43466473 - AluSg SINE Alu -10 300 1 1076 263 113 52 chr6 138949018 138949529 -43465713 + L2 LINE L2 2738 3313 0 197 378 14 0 chr6 138950110 138950184 -43465058 + L2 LINE L2 3239 3313 0 1833 143 0 47 chr6 138950627 138950928 -43464314 + AluSx SINE Alu 2 288 -24 41 48 0 0 chr6 138951179 138951241 -43464001 + AT_rich Low_complexity Low_complexity 1 62 0 526 279 115 34 chr6 138951498 138951767 -43463475 + L2 LINE L2 2963 3253 -60 2257 102 0 34 chr6 138952487 138952810 -43462432 + AluSx SINE Alu 1 312 0 215 292 15 15 chr6 138952868 138952933 -43462309 - L2 LINE L2 -60 3212 3148 23 0 0 0 chr6 138953308 138953331 -43461911 + AT_rich Low_complexity Low_complexity 1 23 0 405 259 17 17 chr6 138953393 138953509 -43461733 + L1ME4a LINE L1 5564 5679 -442 467 251 28 47 chr6 138953515 138953731 -43461511 + L1ME4a LINE L1 5649 5852 -269 318 286 82 27 chr6 138953785 138953932 -43461310 + L1ME4a LINE L1 5963 6117 -4 410 264 10 83 chr6 138955069 138955262 -43459980 + MIR SINE MIR 32 210 -52 451 254 27 0 chr6 138955748 138955858 -43459384 + MIR SINE MIR 3 115 -147 732 312 67 42 chr6 138956830 138957263 -43457979 + MLT1K LTR MaLR 141 584 -4 353 282 5 85 chr6 138958267 138958455 -43456787 - MIR3 SINE MIR -32 176 4 23 68 0 0 chr6 138961714 138961758 -43453484 + GC_rich Low_complexity Low_complexity 1 44 0 281 292 242 0 chr6 138963499 138963619 -43451623 + MIR SINE MIR 57 205 -57 26 0 0 0 chr6 138964245 138964271 -43450971 + AT_rich Low_complexity Low_complexity 1 26 0 386 279 158 13 chr6 138964867 138965025 -43450217 + MER5A DNA MER1_type 9 189 0 8663 77 5 10 chr6 138965840 138966917 -43448325 + MER11C LTR ERVK 1 1071 0 239 374 0 12 chr6 138967199 138967282 -43447960 - MIR SINE MIR -102 106 25 754 299 80 5 chr6 138968022 138968246 -43446996 - MIR SINE MIR -15 247 7 482 276 123 24 chr6 138968260 138968449 -43446793 + L1MC4a LINE L1 5725 5894 -227 315 0 0 0 chr6 138968449 138968484 -43446758 + (TG)n Simple_repeat Simple_repeat 2 36 0 482 276 123 24 chr6 138968484 138968647 -43446595 + L1MC4a LINE L1 5894 6120 -1 250 282 120 28 chr6 138969194 138969336 -43445906 + LTR37B LTR ERV1 255 409 -59 325 354 31 8 chr6 138969511 138969641 -43445601 - MIR3 SINE MIR -70 138 6 2684 46 0 0 chr6 138969787 138970092 -43445150 + AluY SINE Alu 1 305 -6 819 344 55 8 chr6 138970623 138971123 -43444119 - L2 LINE L2 -85 3228 2702 2217 128 0 0 chr6 138971763 138972067 -43443175 - AluSx SINE Alu -6 306 3 6449 96 0 4 chr6 138972393 138973362 -43441880 - L1PA13 LINE L1 -3 6160 5169 44011 48 5 2 chr6 138974988 138981125 -43434117 - L1PA4 LINE L1 -4 6151 1 278 231 0 0 chr6 138981524 138981576 -43433666 - L2 LINE L2 0 3272 3221 264 59 0 0 chr6 138982351 138982385 -43432857 + (T)n Simple_repeat Simple_repeat 1 34 0 1832 148 0 36 chr6 138982522 138982825 -43432417 + AluSx SINE Alu 1 292 -20 367 234 145 0 chr6 138982953 138983098 -43432144 + L1ME4a LINE L1 5956 6121 0 2175 129 0 0 chr6 138983226 138983528 -43431714 - AluSx SINE Alu -10 302 1 22 0 0 0 chr6 138985666 138985688 -43429554 + AT_rich Low_complexity Low_complexity 1 22 0 291 114 0 0 chr6 138986028 138986072 -43429170 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 1713 193 100 52 chr6 138986604 138987086 -43428156 + MLT1D LTR MaLR 1 505 0 1879 163 18 42 chr6 138987524 138987864 -43427378 - THE1C LTR MaLR -4 371 39 2302 108 0 3 chr6 138987864 138988169 -43427073 + AluY SINE Alu 1 304 -7 1879 163 18 42 chr6 138988169 138988208 -43427034 - THE1C LTR MaLR -336 39 1 8907 133 49 17 chr6 138988208 138989739 -43425503 - THE1C-int LTR MaLR 0 1580 1 1959 126 28 83 chr6 138989739 138990136 -43425106 - THE1C LTR MaLR 0 375 1 472 225 220 16 chr6 138990831 138991013 -43424229 + MIR SINE MIR 3 221 -41 4754 29 0 0 chr6 138991039 138991593 -43423649 - L1PA3 LINE L1 -6 6149 5596 194 432 0 11 chr6 138992375 138992470 -43422772 + MIR3 SINE MIR 7 100 -108 507 368 20 12 chr6 138992478 138992731 -43422511 - MIR SINE MIR -6 256 2 262 217 0 0 chr6 138992732 138992778 -43422464 + MIR3 SINE MIR 112 157 -51 1050 325 244 11 chr6 138994028 138994124 -43421118 + L2 LINE L2 1264 1336 -1978 390 42 0 0 chr6 138994124 138994172 -43421070 + (CA)n Simple_repeat Simple_repeat 2 49 0 1050 325 244 11 chr6 138994172 138995259 -43419983 + L2 LINE L2 1336 2723 -591 253 313 35 26 chr6 138995258 138995373 -43419869 + L2 LINE L2 2955 3070 -243 * 2240 92 14 7 chr6 138995477 138995770 -43419472 - AluSg SINE Alu -15 295 1 413 335 53 32 chr6 138995774 138996058 -43419184 - L1M4 LINE L1 -1828 4318 4029 5081 51 6 0 chr6 138997122 138997751 -43417491 - L1PA8 LINE L1 -3 6169 5537 294 29 0 0 chr6 138998145 138998180 -43417062 + (GA)n Simple_repeat Simple_repeat 2 36 0 236 331 45 45 chr6 138999344 138999501 -43415741 + MIR SINE MIR 104 260 -2 286 268 49 70 chr6 139000336 139000478 -43414764 - MER91C DNA MER1_type 0 140 2 198 407 44 19 chr6 139000716 139000986 -43414256 - L2 LINE L2 -165 3107 2831 231 368 21 0 chr6 139001035 139001130 -43414112 - L2 LINE L2 -688 2626 2530 2258 141 55 115 chr6 139001513 139002060 -43413182 + MLT2B2 LTR ERVL 2 515 0 238 258 45 0 chr6 139002917 139002983 -43412259 + MIR3 SINE MIR 115 183 -25 259 255 82 20 chr6 139003255 139003353 -43411889 - L2 LINE L2 0 3272 3169 2327 114 0 0 chr6 139003382 139003690 -43411552 - AluSx SINE Alu -4 308 1 1108 84 19 26 chr6 139004567 139004722 -43410520 - AluSg/x SINE Alu -24 288 135 1218 280 71 15 chr6 139005670 139006134 -43409108 - MLT1F1 LTR MaLR 0 567 78 538 320 77 10 chr6 139006177 139006371 -43408871 - L2 LINE L2 -276 3037 2831 1768 231 108 26 chr6 139006382 139007078 -43408164 - L1ME1 LINE L1 -190 6045 5284 * 4081 254 62 57 chr6 139007060 139007195 -43408047 - L1ME1 LINE L1 -4178 2218 2085 192 77 0 0 chr6 139007195 139007221 -43408021 + (TG)n Simple_repeat Simple_repeat 2 27 0 4081 254 62 57 chr6 139007221 139008482 -43406760 - L1ME1 LINE L1 -4311 2085 805 2252 118 0 7 chr6 139008482 139008787 -43406455 + AluSx SINE Alu 1 303 -9 4081 254 62 57 chr6 139008787 139009560 -43405682 - L1ME1 LINE L1 -5591 805 37 322 254 0 0 chr6 139009812 139009875 -43405367 + L2 LINE L2 3244 3306 -7 294 309 63 8 chr6 139010174 139010300 -43404942 + MIR SINE MIR 25 157 -105 412 255 61 40 chr6 139010300 139010549 -43404693 + MER46C DNA MER2_type 1 310 -28 297 248 50 10 chr6 139010614 139010715 -43404527 + MIR SINE MIR 158 262 0 24 0 0 0 chr6 139010715 139010739 -43404503 + AT_rich Low_complexity Low_complexity 1 24 0 229 239 0 56 chr6 139010816 139010887 -43404355 + T-rich Low_complexity Low_complexity 4 70 0 2313 101 7 0 chr6 139010896 139011202 -43404040 - AluSx SINE Alu -4 308 1 35 24 0 0 chr6 139011431 139011473 -43403769 + AT_rich Low_complexity Low_complexity 1 42 0 321 254 67 67 chr6 139011671 139011805 -43403437 - MIR SINE MIR -50 212 79 939 303 110 57 chr6 139013138 139013747 -43401495 + HAL1 LINE L1 4 580 -1927 933 184 13 53 chr6 139013747 139013975 -43401267 + MER20 DNA MER1_type 1 219 0 631 240 74 0 chr6 139013983 139014158 -43401084 + MER5A DNA MER1_type 1 188 -1 939 303 110 57 chr6 139014158 139014397 -43400845 + HAL1 LINE L1 586 906 -1601 21 0 0 0 chr6 139016817 139016838 -43398404 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr6 139017263 139017288 -43397954 + (TC)n Simple_repeat Simple_repeat 2 26 0 480 251 242 18 chr6 139017751 139017970 -43397272 - MIR SINE MIR 0 262 6 266 274 169 0 chr6 139018200 139018324 -43396918 + MIR SINE MIR 63 207 -55 810 0 0 0 chr6 139018771 139018861 -43396381 + (AATAG)n Simple_repeat Simple_repeat 3 92 0 533 211 136 14 chr6 139019831 139019978 -43395264 - MER45A DNA AcHobo -1 177 13 281 293 75 33 chr6 139020255 139020467 -43394775 + L1M4 LINE L1 3441 3661 -2485 273 243 59 21 chr6 139020481 139020617 -43394625 + LTR33 LTR ERVL 20 164 -357 1838 174 67 9 chr6 139021038 139021383 -43393859 + MLT1A1 LTR MaLR 1 365 0 1014 286 87 42 chr6 139021385 139021999 -43393243 + L1M4 LINE L1 3734 4319 -1827 1877 151 3 3 chr6 139021999 139022284 -43392958 + AluSx SINE Alu 24 308 -4 1014 286 87 42 chr6 139022284 139022770 -43392472 + L1M4 LINE L1 4319 4782 -1364 1923 93 0 0 chr6 139022770 139023006 -43392236 + AluSx SINE Alu 30 265 -47 1014 286 87 42 chr6 139023006 139023381 -43391861 + L1M4 LINE L1 4782 5277 -869 990 287 57 76 chr6 139023383 139023912 -43391330 - L2 LINE L2 -586 2728 2210 11696 219 32 31 chr6 139024143 139025954 -43389288 - L1PA16 LINE L1 -16 6207 4398 3386 64 2 0 chr6 139025954 139026389 -43388853 + L1PA6 LINE L1 5718 6153 -1 11696 219 32 31 chr6 139026389 139030355 -43384887 - L1PA16 LINE L1 -1825 4398 395 305 389 102 22 chr6 139030812 139031038 -43384204 - L1M2 LINE L1 -6592 257 14 328 271 49 8 chr6 139031531 139031653 -43383589 + MLT1L LTR MaLR 142 268 -347 2327 104 13 0 chr6 139031988 139032297 -43382945 + AluSp SINE Alu 1 313 0 2442 60 0 7 chr6 139034293 139034575 -43380667 + AluY SINE Alu 1 282 -29 208 0 0 0 chr6 139034575 139034598 -43380644 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 2442 60 0 7 chr6 139034598 139034613 -43380629 + AluY SINE Alu 282 296 -15 2181 97 0 52 chr6 139034624 139034953 -43380289 + AluSx SINE Alu 1 312 0 2072 120 0 44 chr6 139035806 139036123 -43379119 + AluSx SINE Alu 1 303 -9 22 70 0 0 chr6 139036319 139036362 -43378880 + AT_rich Low_complexity Low_complexity 1 43 0 487 329 111 8 chr6 139036398 139036632 -43378610 - MIR SINE MIR 0 262 5 2081 180 43 35 chr6 139036633 139037093 -43378149 + MLT2C2 LTR ERVL 1 464 0 258 344 38 32 chr6 139037120 139037277 -43377965 - MIR SINE MIR -57 205 48 2079 124 0 0 chr6 139037411 139037693 -43377549 + AluSx SINE Alu 1 282 -30 2104 144 30 70 chr6 139038656 139039087 -43376155 + MLT2D LTR ERVL 1 414 0 2392 77 0 3 chr6 139039250 139039547 -43375695 - AluSc SINE Alu -13 296 1 2012 144 7 0 chr6 139040201 139040500 -43374742 + AluSx SINE Alu 1 301 -11 355 309 120 42 chr6 139041010 139041201 -43374041 + MIR SINE MIR 1 206 -56 191 286 205 9 chr6 139041310 139041422 -43373820 + L2 LINE L2 3094 3227 -45 361 329 28 7 chr6 139041613 139041756 -43373486 - MLT1L LTR MaLR -159 456 311 426 261 121 48 chr6 139041771 139042043 -43373199 + L2 LINE L2 2034 2325 -989 313 281 97 51 chr6 139042043 139042260 -43372982 - L1MC4a LINE L1 -1904 5904 5678 317 341 65 10 chr6 139042301 139042591 -43372651 - L1MEd LINE L1 -3611 2518 2213 204 125 0 0 chr6 139042705 139042737 -43372505 + (TC)n Simple_repeat Simple_repeat 1 32 0 1901 133 0 37 chr6 139043058 139043358 -43371884 + AluSx SINE Alu 1 289 -23 608 274 63 32 chr6 139043485 139044126 -43371116 - L1MEd LINE L1 -4560 1569 911 614 339 84 44 chr6 139044305 139044827 -43370415 - L1MEd LINE L1 -5476 643 101 183 80 0 0 chr6 139045005 139045030 -43370212 + (TC)n Simple_repeat Simple_repeat 2 26 0 237 108 0 0 chr6 139045049 139045086 -43370156 + (TG)n Simple_repeat Simple_repeat 1 37 0 312 345 109 19 chr6 139045124 139045328 -43369914 - L2 LINE L2 -217 3055 2800 1630 146 24 0 chr6 139045328 139045574 -43369668 - AluSx SINE Alu -60 252 1 312 345 109 19 chr6 139045574 139045675 -43369567 - L2 LINE L2 -472 2800 2709 1915 169 3 29 chr6 139045968 139046316 -43368926 + MER44D DNA MER2_type 1 609 0 225 311 126 36 chr6 139046594 139046871 -43368371 - L2 LINE L2 -966 2348 2047 2048 119 48 40 chr6 139047353 139047426 -43367816 - THE1C LTR MaLR 0 375 304 2238 101 17 0 chr6 139047426 139047723 -43367519 + AluSq SINE Alu 1 302 -11 2048 119 48 40 chr6 139047723 139048020 -43367222 - THE1C LTR MaLR -71 304 2 651 306 55 14 chr6 139048027 139048246 -43366996 - MIR SINE MIR -33 229 2 368 314 87 37 chr6 139048365 139048741 -43366501 + MLT1I LTR MaLR 1 348 -61 4577 113 3 48 chr6 139048741 139049465 -43365777 - LTR8 LTR ERV1 0 691 1 368 314 87 37 chr6 139049465 139049515 -43365727 + MLT1I LTR MaLR 348 394 -15 286 340 48 68 chr6 139049523 139049729 -43365513 - L2 LINE L2 -182 3090 2889 2046 175 57 154 chr6 139049760 139050565 -43364677 + LTR8A LTR ERV1 1 727 0 1979 204 61 39 chr6 139050829 139051323 -43363919 - MLT1D LTR MaLR 0 505 1 28 0 0 0 chr6 139051538 139051566 -43363676 + AT_rich Low_complexity Low_complexity 1 28 0 442 310 177 0 chr6 139052092 139052250 -43362992 - MER5A DNA MER1_type 0 189 4 416 321 17 34 chr6 139052380 139052617 -43362625 + L1M4 LINE L1 1356 1588 -5908 1497 216 39 16 chr6 139052632 139052938 -43362304 - MER70A LTR ERVL -159 313 1 1810 265 50 37 chr6 139052938 139054218 -43361024 + L1M4 LINE L1 2762 4055 -3510 632 224 0 0 chr6 139054377 139054502 -43360740 + FLAM_A SINE Alu 10 134 -8 24 32 0 0 chr6 139054777 139054808 -43360434 + AT_rich Low_complexity Low_complexity 1 31 0 280 278 45 15 chr6 139054955 139055088 -43360154 + L1P LINE L1 4879 5015 -1131 2606 87 25 3 chr6 139055183 139055539 -43359703 + THE1B LTR MaLR 1 364 0 1003 281 85 36 chr6 139055662 139055917 -43359325 + L1MC4a LINE L1 5265 5506 -634 1815 162 16 7 chr6 139055917 139056220 -43359022 + AluJb SINE Alu 7 312 0 1003 281 85 36 chr6 139056220 139056512 -43358730 + L1MC4a LINE L1 5506 5837 -303 1897 136 0 36 chr6 139056818 139057120 -43358122 + AluSx SINE Alu 1 291 -21 2159 249 77 12 chr6 139057163 139057917 -43357325 + L1M4 LINE L1 4188 4990 -2575 1406 232 29 20 chr6 139057909 139058358 -43356884 + L1M4 LINE L1 6226 6678 -887 * 4441 138 31 6 chr6 139058358 139059088 -43356154 - Tigger3(Golem) DNA MER2_type 0 3029 2281 868 184 14 0 chr6 139059088 139059235 -43356007 - Tigger3(Golem) DNA MER2_type -2829 200 52 2117 143 116 66 chr6 139059240 139059707 -43355535 - LTR2B LTR ERV1 0 490 1 38241 71 5 3 chr6 139059707 139064628 -43350614 - Harlequin LTR ERV1 0 6896 1964 4849 160 113 44 chr6 139064614 139065852 -43349390 - Harlequin LTR ERV1 -5311 1585 263 * 805 121 8 15 chr6 139065845 139065977 -43349265 - HERVE LTR ERV1 -7428 385 255 * 755 130 0 51 chr6 139065961 139066099 -43349143 - HERVE LTR ERV1 -7428 385 255 * 835 101 0 51 chr6 139066083 139066221 -43349021 - HERVE LTR ERV1 -7428 385 255 * 2588 115 10 32 chr6 139066192 139066600 -43348642 - HERVE LTR ERV1 -6497 399 1 2282 168 41 37 chr6 139066600 139067088 -43348154 - LTR2B LTR ERV1 0 490 1 247 286 0 0 chr6 139067089 139067138 -43348104 - Tigger3(Golem) DNA MER2_type -2980 49 1 267 145 132 26 chr6 139067138 139067214 -43348028 + L1M LINE L1 5258 5341 -901 * 1317 221 39 7 chr6 139067209 139067516 -43347726 + L1MD2 LINE L1 6043 6359 0 2018 170 71 15 chr6 139067637 139068043 -43347199 + MSTB1 LTR MaLR 3 431 -1 614 259 45 53 chr6 139068466 139068713 -43346529 + L1ME1 LINE L1 5916 6160 -6 989 210 32 29 chr6 139068740 139069050 -43346192 + L1ME3 LINE L1 2166 2476 -3920 * 1165 228 66 64 chr6 139069041 139069527 -43345715 + L1ME3 LINE L1 5744 6230 -1 1155 224 101 26 chr6 139069854 139070037 -43345205 - MLT1A2 LTR MaLR 0 374 206 219 36 0 0 chr6 139070037 139070065 -43345177 + (GA)n Simple_repeat Simple_repeat 1 28 0 1155 224 101 26 chr6 139070065 139070229 -43345013 - MLT1A2 LTR MaLR -168 206 1 3169 215 41 50 chr6 139071104 139071417 -43343825 + L1MB7 LINE L1 3385 3699 -3866 675 203 0 0 chr6 139071417 139071535 -43343707 + FLAM_C SINE Alu 1 118 -15 3169 215 41 50 chr6 139071535 139072320 -43342922 + L1MB7 LINE L1 3699 4476 -3089 795 184 7 0 chr6 139072329 139072495 -43342747 + L1MB7 LINE L1 4945 5112 -2453 352 197 16 0 chr6 139072533 139072594 -43342648 + HAL1b LINE L1 382 443 -905 1621 152 3 82 chr6 139072594 139072715 -43342527 + AluJb SINE Alu 13 142 -170 1964 127 0 7 chr6 139072715 139073006 -43342236 + AluSq SINE Alu 1 289 -24 1621 152 3 82 chr6 139073006 139073017 -43342225 + AluJb SINE Alu 142 152 -160 207 0 0 0 chr6 139073017 139073040 -43342202 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1621 152 3 82 chr6 139073040 139073209 -43342033 + AluJb SINE Alu 152 291 -21 281 236 114 8 chr6 139073245 139073368 -43341874 + HAL1b LINE L1 703 838 -510 24 0 0 0 chr6 139073453 139073477 -43341765 + AT_rich Low_complexity Low_complexity 1 24 0 1708 220 38 15 chr6 139074838 139075317 -43339925 + L1MDa LINE L1 2569 3055 -3485 4353 187 61 16 chr6 139075356 139076789 -43338453 + L1MB7 LINE L1 6081 7587 -16 312 27 0 0 chr6 139078997 139079034 -43336208 + (CA)n Simple_repeat Simple_repeat 2 38 0 313 320 93 31 chr6 139079039 139079392 -43335850 + L1M4 LINE L1 2245 2619 -3527 1274 229 63 79 chr6 139079471 139079723 -43335519 - L1MC5 LINE L1 -821 6987 6848 2094 130 10 0 chr6 139079723 139080023 -43335219 - AluSx SINE Alu -9 303 1 1274 229 63 79 chr6 139080023 139080306 -43334936 - L1MC5 LINE L1 -960 6848 6562 1863 127 8 0 chr6 139080329 139080589 -43334653 - AluSx SINE Alu -37 275 14 387 336 123 42 chr6 139080603 139080984 -43334258 - L1MC4a LINE L1 -1291 6517 6106 291 279 57 8 chr6 139081031 139081153 -43334089 + LTR67 LTR ERVL 411 538 -19 492 247 14 155 chr6 139082292 139082445 -43332797 - MIR SINE MIR 0 262 168 2078 126 7 3 chr6 139082445 139082754 -43332488 - AluSx SINE Alu -2 310 1 492 247 14 155 chr6 139082754 139082891 -43332351 - MIR SINE MIR -94 168 13 442 338 80 6 chr6 139083547 139083746 -43331496 + MIR SINE MIR 15 229 -33 1279 208 0 9 chr6 139084796 139085017 -43330225 + MER58A DNA MER1_type 2 220 -4 274 122 24 0 chr6 139085316 139085357 -43329885 - LTR34 LTR ERV1 -75 624 583 34 24 0 0 chr6 139085375 139085416 -43329826 + AT_rich Low_complexity Low_complexity 1 41 0 24 53 0 0 chr6 139085558 139085596 -43329646 + AT_rich Low_complexity Low_complexity 1 38 0 2261 104 0 19 chr6 139085697 139086004 -43329238 + AluSg SINE Alu 1 301 -9 1448 201 99 40 chr6 139086286 139086660 -43328582 - MSTD LTR MaLR 0 396 1 239 204 93 0 chr6 139087022 139087076 -43328166 + MER34B LTR ERV1 45 103 -462 198 287 53 11 chr6 139087598 139087692 -43327550 + MIR3 SINE MIR 106 203 -5 22 35 0 0 chr6 139087767 139087796 -43327446 + AT_rich Low_complexity Low_complexity 1 29 0 254 327 48 39 chr6 139087961 139088065 -43327177 + MIR SINE MIR 18 122 -86 2257 111 0 0 chr6 139088152 139088450 -43326792 + AluSx SINE Alu 1 298 -14 348 321 45 0 chr6 139089457 139089591 -43325651 + MIR SINE MIR 51 190 -72 2202 125 0 0 chr6 139090529 139090826 -43324416 + AluSg SINE Alu 1 297 -13 332 256 96 16 chr6 139091279 139091404 -43323838 + MIR SINE MIR 128 262 0 1643 166 46 7 chr6 139092083 139092367 -43322875 - AluJb SINE Alu -17 295 1 319 98 0 0 chr6 139092897 139092965 -43322277 + AluSp/q SINE Alu 243 310 0 522 281 77 77 chr6 139092965 139093289 -43321953 + L1MC/D LINE L1 5364 5687 -2121 856 61 0 0 chr6 139093852 139093951 -43321291 + L1PA7 LINE L1 6048 6146 -8 371 281 35 84 chr6 139093953 139094156 -43321086 + MER21B LTR ERV1 485 677 -186 369 332 25 8 chr6 139094483 139094621 -43320621 - MIR SINE MIR -61 147 37 430 317 14 0 chr6 139094762 139094907 -43320335 - LTR16C LTR ERVL -82 409 263 869 208 61 5 chr6 139095137 139095334 -43319908 - MER3 DNA MER1_type 0 209 2 396 319 70 67 chr6 139095358 139095623 -43319619 + L1ME4a LINE L1 5551 5819 -302 2209 128 0 0 chr6 139095623 139095929 -43319313 - AluSq SINE Alu -7 306 1 396 319 70 67 chr6 139095929 139096008 -43319234 + L1ME4a LINE L1 5819 5896 -225 23 33 0 0 chr6 139096048 139096078 -43319164 + AT_rich Low_complexity Low_complexity 1 30 0 491 330 37 33 chr6 139096186 139096401 -43318841 - L3 LINE CR1 -901 676 461 248 163 0 20 chr6 139096431 139096480 -43318762 - L2 LINE L2 0 3313 3266 2318 95 3 3 chr6 139096523 139096829 -43318413 + AluSx SINE Alu 1 306 -6 329 409 31 0 chr6 139097393 139097552 -43317690 - L2 LINE L2 -5 3267 3104 546 261 55 12 chr6 139098587 139098752 -43316490 - MER5B DNA MER1_type -2 176 5 287 276 35 46 chr6 139099235 139099322 -43315920 + MIR3 SINE MIR 76 161 -47 2194 137 0 0 chr6 139099397 139099704 -43315538 - AluSq SINE Alu -5 308 2 2988 161 8 14 chr6 139099745 139100261 -43314981 + L1MB4 LINE L1 5662 6174 -6 2137 75 27 30 chr6 139100371 139100666 -43314576 - AluSq SINE Alu -19 294 1 290 307 72 24 chr6 139100804 139100970 -43314272 + MER5B DNA MER1_type 4 177 -1 300 237 184 0 chr6 139101693 139101769 -43313473 + LOR1a LTR ERV1 1 90 -407 * 1833 156 31 3 chr6 139101764 139102053 -43313189 + LOR1b LTR ERV1 165 461 0 260 319 0 0 chr6 139102084 139102178 -43313064 + CT-rich Low_complexity Low_complexity 2 95 0 202 195 0 0 chr6 139102179 139102220 -43313022 + (CA)n Simple_repeat Simple_repeat 2 42 0 2132 120 0 0 chr6 139102293 139102618 -43312624 + AluY SINE Alu 1 325 0 4358 144 20 25 chr6 139102775 139103539 -43311703 + LTR1 LTR ERV1 1 760 -25 548 241 75 15 chr6 139104266 139104399 -43310843 - Charlie8 DNA MER1_type -2186 231 91 453 284 135 25 chr6 139104557 139105032 -43310210 - L1ME4a LINE L1 -4 6117 5591 258 366 80 0 chr6 139105047 139105159 -43310083 + MIR SINE MIR 31 151 -111 247 195 0 0 chr6 139105168 139105209 -43310033 - L1ME4a LINE L1 -559 5562 5522 2480 154 51 7 chr6 139105398 139105494 -43309748 + Tigger2a DNA MER2_type 2 92 -2616 195 42 0 0 chr6 139105494 139105518 -43309724 + (TCC)n Simple_repeat Simple_repeat 2 25 0 2480 154 51 7 chr6 139105518 139105836 -43309406 + Tigger2a DNA MER2_type 92 434 0 23 97 0 0 chr6 139105884 139105956 -43309286 + AT_rich Low_complexity Low_complexity 1 72 0 2388 62 14 3 chr6 139106057 139106348 -43308894 + AluY SINE Alu 1 294 -17 2202 119 3 0 chr6 139106912 139107214 -43308028 + AluSg SINE Alu 1 303 -7 3127 107 22 7 chr6 139107423 139107870 -43307372 + L1PB1 LINE L1 5696 6149 -2 1794 189 42 12 chr6 139108811 139109144 -43306098 + MER61A LTR ERV1 1 343 0 207 69 0 0 chr6 139113249 139113278 -43301964 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 139113876 139113897 -43301345 + AT_rich Low_complexity Low_complexity 1 21 0 1632 161 3 48 chr6 139113899 139114210 -43301032 - AluJo SINE Alu -15 297 1 202 299 96 45 chr6 139114514 139114650 -43300592 + MIR SINE MIR 21 165 -97 300 382 24 18 chr6 139115106 139115276 -43299966 + MIR3 SINE MIR 10 180 -28 2720 81 13 31 chr6 139115363 139115627 -43299615 - MER4B LTR ERV1 0 610 354 2413 101 0 0 chr6 139115627 139115934 -43299308 + AluSx SINE Alu 1 307 -5 2720 81 13 31 chr6 139115934 139116053 -43299189 - MER4B LTR ERV1 -256 354 234 1822 82 0 67 chr6 139116153 139116203 -43299039 - MER4B LTR ERV1 -358 252 200 2009 142 0 0 chr6 139116203 139116491 -43298751 - AluY SINE Alu -23 288 1 1822 82 0 67 chr6 139116491 139116710 -43298532 - MER4B LTR ERV1 -410 200 1 2175 125 7 3 chr6 139116717 139117014 -43298228 - AluSq SINE Alu -15 298 1 339 298 83 8 chr6 139117183 139117304 -43297938 + MIR3 SINE MIR 45 174 -34 3748 133 19 4 chr6 139118445 139118963 -43296279 - MER1A DNA MER1_type -1 526 1 274 333 37 9 chr6 139119159 139119267 -43295975 - MIR SINE MIR -55 207 97 411 248 39 16 chr6 139119886 139120015 -43295227 + MIR SINE MIR 111 242 -20 1070 204 0 43 chr6 139120142 139120377 -43294865 - AluJo SINE Alu -1 311 87 300 317 53 89 chr6 139121458 139121704 -43293538 + L2 LINE L2 3014 3250 -22 2086 133 0 0 chr6 139121726 139122050 -43293192 + AluSx SINE Alu 1 324 0 22 0 0 0 chr6 139122154 139122176 -43293066 + AT_rich Low_complexity Low_complexity 1 22 0 181 316 18 0 chr6 139122297 139122354 -43292888 + MIR SINE MIR 20 77 -185 1219 178 47 0 chr6 139122715 139122928 -43292314 - AluJb SINE Alu -12 300 78 25 51 0 0 chr6 139123239 139123278 -43291964 + AT_rich Low_complexity Low_complexity 1 39 0 475 261 0 6 chr6 139123933 139124047 -43291195 + MIR SINE MIR 46 157 -51 342 219 0 114 chr6 139124602 139124707 -43290535 - MER103 DNA DNA -51 115 23 738 224 14 123 chr6 139124787 139125144 -43290098 - L2 LINE L2 0 3313 2996 265 320 89 98 chr6 139125255 139125715 -43289527 - L2 LINE L2 -1 3271 2816 335 248 316 0 chr6 139125804 139125937 -43289305 - MER5A DNA MER1_type -6 183 9 393 294 0 20 chr6 139125945 139126047 -43289195 + MER5B DNA MER1_type 79 178 0 234 366 146 42 chr6 139126111 139126420 -43288822 - L2 LINE L2 -620 2694 2354 2030 90 0 50 chr6 139126751 139127051 -43288191 - AluY SINE Alu -7 304 20 1686 175 3 21 chr6 139128821 139129107 -43286135 + AluJo SINE Alu 1 281 -31 2648 92 122 10 chr6 139129107 139129510 -43285732 - LTR7 LTR ERV1 -2 448 1 2453 92 48 13 chr6 139129510 139129889 -43285353 - HERVH LTR ERV1 0 7713 7322 1378 123 38 0 chr6 139129887 139130099 -43285143 - HERVH LTR ERV1 -1894 5819 5600 * 4566 128 1 1 chr6 139130100 139130762 -43284480 - HERVH LTR ERV1 -2564 5149 4488 5940 87 30 2 chr6 139130764 139131595 -43283647 - HERVH LTR ERV1 -3720 3993 3140 * 22256 76 2 16 chr6 139131581 139134617 -43280625 - HERVH LTR ERV1 -4721 2992 1 2636 95 125 5 chr6 139134619 139135019 -43280223 - LTR7 LTR ERV1 -2 448 1 2338 270 64 19 chr6 139136639 139137620 -43277622 - L1ME LINE L1 -5045 1025 1 979 267 128 3 chr6 139137837 139138181 -43277061 - MLT1B LTR MaLR 0 390 4 217 132 0 0 chr6 139138197 139138235 -43277007 + (T)n Simple_repeat Simple_repeat 1 38 0 453 343 111 43 chr6 139138236 139138776 -43276466 - L2 LINE L2 -946 2368 1792 238 271 167 10 chr6 139138895 139138991 -43276251 - L2 LINE L2 -1 3312 3202 378 266 0 21 chr6 139139367 139139461 -43275781 - MER5B DNA MER1_type -82 96 5 2362 80 0 7 chr6 139140262 139140562 -43274680 + AluSc SINE Alu 3 300 -9 233 240 0 0 chr6 139140704 139140754 -43274488 + L2 LINE L2 3263 3312 -1 296 153 0 0 chr6 139141338 139141397 -43273845 - L1MB7 LINE L1 -10 6174 6116 1945 166 3 3 chr6 139141399 139141701 -43273541 + AluJb SINE Alu 1 302 -10 2241 105 3 16 chr6 139141703 139142016 -43273226 + AluSc SINE Alu 1 309 0 305 208 2 65 chr6 139142065 139142171 -43273071 - L1ME1 LINE L1 -164 6014 5910 308 284 0 22 chr6 139143413 139143547 -43271695 + (TCTCTG)n Simple_repeat Simple_repeat 4 134 0 249 98 0 0 chr6 139143557 139143598 -43271644 + (TC)n Simple_repeat Simple_repeat 1 41 0 962 81 0 0 chr6 139144051 139144174 -43271068 - AluSg/x SINE Alu -1 308 186 200 262 24 0 chr6 139144177 139144219 -43271023 + MER5B DNA MER1_type 1 43 -135 * 245 176 432 0 chr6 139144208 139144282 -43270960 - MER5B DNA MER1_type -72 106 1 328 107 36 0 chr6 139144355 139144411 -43270831 + L1MB2 LINE L1 6069 6126 -45 835 169 6 6 chr6 139144719 139144897 -43270345 + CT-rich Low_complexity Low_complexity 3 180 0 206 203 34 0 chr6 139145142 139145201 -43270041 + A-rich Low_complexity Low_complexity 4 64 0 1801 77 0 0 chr6 139145329 139145551 -43269691 - AluY SINE Alu -7 304 83 322 281 83 8 chr6 139145577 139145698 -43269544 - L1MC4a LINE L1 -1638 6170 6041 2453 90 3 0 chr6 139146170 139146482 -43268760 + AluSq SINE Alu 1 313 0 751 216 30 0 chr6 139146561 139146728 -43268514 - MER20 DNA MER1_type -5 214 43 199 51 0 51 chr6 139146765 139146804 -43268438 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr6 139146896 139146919 -43268323 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 489 277 91 47 chr6 139146927 139146982 -43268260 - L1MC4 LINE L1 -155 7887 7836 1933 150 0 44 chr6 139146982 139147302 -43267940 + AluJb SINE Alu 1 306 -6 2237 121 0 3 chr6 139147302 139147609 -43267633 + AluSq SINE Alu 1 306 -7 489 277 91 47 chr6 139147609 139147913 -43267329 - L1MC4 LINE L1 -205 7837 7511 262 240 0 0 chr6 139148140 139148190 -43267052 + L2 LINE L2 3219 3268 -4 2275 97 0 10 chr6 139149139 139149438 -43265804 + AluSp SINE Alu 1 296 -17 196 314 162 9 chr6 139149562 139149667 -43265575 - L2 LINE L2 -11 3302 3182 188 132 0 26 chr6 139149667 139149705 -43265537 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 208 300 130 70 chr6 139149778 139149978 -43265264 - L2 LINE L2 -162 3110 2899 246 257 43 29 chr6 139150110 139150180 -43265062 - MER5B DNA MER1_type -6 172 102 701 207 37 18 chr6 139150185 139150349 -43264893 + MER5A DNA MER1_type 23 189 0 193 296 26 122 chr6 139150493 139150763 -43264479 + L2 LINE L2 2817 3060 -212 293 366 33 27 chr6 139151077 139151260 -43263982 + MIR SINE MIR 8 191 -71 14862 135 200 87 chr6 139152788 139156925 -43258317 + L1P LINE L1 3 4611 -1535 3412 68 11 4 chr6 139156925 139157382 -43257860 + L1PA8 LINE L1 5708 6169 -3 1752 155 16 35 chr6 139158308 139158618 -43256624 + AluJb SINE Alu 1 304 -8 2206 109 6 3 chr6 139158954 139159265 -43255977 - AluSx SINE Alu 0 312 1 458 325 111 26 chr6 139160399 139160750 -43254492 - L1ME LINE L1 -462 5659 5279 338 324 0 0 chr6 139160753 139160864 -43254378 - L1ME LINE L1 -1057 5089 4979 182 116 23 0 chr6 139162000 139162043 -43253199 + T-rich Low_complexity Low_complexity 2 45 0 884 200 15 0 chr6 139162297 139162502 -43252740 - L1M4 LINE L1 -3527 2619 2412 378 202 77 0 chr6 139162534 139162633 -43252609 + MLT1I LTR MaLR 42 146 -263 1032 116 57 181 chr6 139164076 139164340 -43250902 - MER33 DNA MER1_type -2261 324 117 679 179 8 22 chr6 139164340 139164474 -43250768 + FLAM_A SINE Alu 1 132 -1 1032 116 57 181 chr6 139164474 139164579 -43250663 - MER33 DNA MER1_type -2468 117 1 643 208 8 8 chr6 139164776 139164901 -43250341 + FLAM_C SINE Alu 1 125 -8 483 250 26 0 chr6 139165656 139165772 -43249470 + MIR3 SINE MIR 82 200 -8 855 272 57 35 chr6 139166985 139167785 -43247457 - L1ME3 LINE L1 -212 5950 5131 3489 119 38 45 chr6 139167809 139167990 -43247252 + MER51A LTR ERV1 1 182 -452 2266 128 19 25 chr6 139167990 139168356 -43246886 - THE1B LTR MaLR 0 364 1 3489 119 38 45 chr6 139168356 139168813 -43246429 + MER51A LTR ERV1 182 634 0 729 273 97 52 chr6 139169062 139169791 -43245451 - L1ME LINE L1 -1355 4791 4013 1731 160 43 0 chr6 139169791 139170072 -43245170 + AluJo SINE Alu 2 294 -18 729 273 97 52 chr6 139170072 139170229 -43245013 - L1ME LINE L1 -2133 4013 3865 1800 125 0 4 chr6 139170298 139170592 -43244650 - AluSx SINE Alu 0 331 39 652 203 8 8 chr6 139170604 139170727 -43244515 - FLAM_C SINE Alu -19 124 2 386 324 19 16 chr6 139170958 139171070 -43244172 - L1ME LINE L1 -2417 3729 3619 1853 134 52 0 chr6 139171070 139171360 -43243882 - AluSx SINE Alu -7 305 1 386 324 19 16 chr6 139171360 139171503 -43243739 - L1ME LINE L1 -2527 3619 3473 305 282 59 0 chr6 139172609 139172694 -43242548 - L1MC4 LINE L1 -1339 6703 6614 2196 101 0 7 chr6 139172697 139172983 -43242259 - AluSx SINE Alu -6 306 23 22 0 0 0 chr6 139173159 139173181 -43242061 + AT_rich Low_complexity Low_complexity 1 22 0 256 298 29 39 chr6 139173186 139173290 -43241952 + L3 LINE CR1 1390 1492 -85 1788 157 3 7 chr6 139173440 139173726 -43241516 + AluJb SINE Alu 1 285 -27 198 91 0 0 chr6 139173733 139173766 -43241476 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 271 256 33 11 chr6 139174022 139174112 -43241130 - MIR SINE MIR -4 258 167 2206 110 0 0 chr6 139174714 139175022 -43240220 - AluSx SINE Alu 0 308 1 2245 90 3 10 chr6 139175676 139175995 -43239247 + AluSp SINE Alu 1 313 0 237 356 56 26 chr6 139176001 139176304 -43238938 + L1MEc LINE L1 40 351 -6045 2370 106 0 0 chr6 139176405 139176706 -43238536 + AluSx SINE Alu 1 301 -11 1676 130 7 18 chr6 139176967 139177244 -43237998 - ERVL LTR ERVL -919 4845 4572 511 195 62 41 chr6 139177254 139177282 -43237960 + L1MEc LINE L1 943 969 -5236 231 114 0 0 chr6 139177282 139177317 -43237925 + (CA)n Simple_repeat Simple_repeat 2 36 0 511 195 62 41 chr6 139177317 139177483 -43237759 + L1MEc LINE L1 969 1141 -5064 4166 113 30 8 chr6 139177532 139178161 -43237081 - L1PA15 LINE L1 0 6165 5523 3241 225 130 46 chr6 139178223 139178530 -43236712 + L1MC4 LINE L1 6470 6750 -1292 1867 138 34 14 chr6 139178530 139178826 -43236416 - AluJb SINE Alu -10 302 1 3241 225 130 46 chr6 139178826 139179835 -43235407 + L1MC4 LINE L1 6750 7896 -146 327 255 0 21 chr6 139179834 139179928 -43235314 + L1MD3 LINE L1 7893 7984 -11 * 1924 168 7 3 chr6 139180420 139180724 -43234518 - AluJb SINE Alu -7 305 1 51 42 0 0 chr6 139181514 139181586 -43233656 + AT_rich Low_complexity Low_complexity 1 72 0 21 0 0 0 chr6 139182127 139182148 -43233094 + AT_rich Low_complexity Low_complexity 1 21 0 2145 109 7 0 chr6 139182154 139182439 -43232803 - AluSx SINE Alu -25 287 1 2134 136 7 0 chr6 139183873 139184182 -43231060 + AluSx SINE Alu 1 311 -1 234 294 47 12 chr6 139184870 139184955 -43230287 + Charlie8 DNA MER1_type 2 89 -2328 839 134 0 8 chr6 139185020 139185154 -43230088 - FLAM_A SINE Alu 0 133 1 2320 100 0 0 chr6 139185398 139185707 -43229535 + AluSx SINE Alu 3 311 -1 24 32 0 0 chr6 139186924 139186955 -43228287 + AT_rich Low_complexity Low_complexity 1 31 0 1913 176 70 44 chr6 139188767 139189221 -43226021 + MLT1C LTR MaLR 2 467 0 1501 258 107 59 chr6 139190313 139190524 -43224718 - L2 LINE L2 0 3313 3114 2054 144 0 0 chr6 139190524 139190816 -43224426 + AluSx SINE Alu 1 292 -20 1501 258 107 59 chr6 139190816 139191454 -43223788 - L2 LINE L2 -199 3114 2452 195 100 0 0 chr6 139191679 139191709 -43223533 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1908 83 70 30 chr6 139192078 139192378 -43222864 + AluSx SINE Alu 1 312 0 2045 245 95 18 chr6 139194971 139195393 -43219849 - L1ME3A LINE L1 -31 6139 5751 3359 92 70 26 chr6 139195393 139195924 -43219318 + MER41A LTR ERV1 1 554 0 2045 245 95 18 chr6 139195924 139196245 -43218997 - L1ME3A LINE L1 -419 5751 5338 722 225 8 8 chr6 139196264 139196500 -43218742 - L1ME3A LINE L1 -1568 4578 4343 487 284 25 59 chr6 139196519 139196723 -43218519 - L3 LINE CR1 -151 1426 1230 724 223 65 112 chr6 139198825 139199228 -43216014 + MLT1J LTR MaLR 98 481 -30 254 252 0 70 chr6 139199265 139199380 -43215862 + L1ME LINE L1 5697 5803 -318 191 254 60 15 chr6 139199902 139199969 -43215273 - L2 LINE L2 -5 3308 3239 3064 162 125 14 chr6 139200000 139200698 -43214544 + LTR48 LTR ERV1 13 787 0 363 105 0 0 chr6 139201319 139201376 -43213866 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 2421 88 3 0 chr6 139202448 139202753 -43212489 - AluSp SINE Alu -7 306 1 989 275 65 6 chr6 139203167 139203505 -43211737 + LTR16A LTR ERVL 83 440 -10 697 217 39 39 chr6 139204537 139204717 -43210525 - MIR SINE MIR -72 190 11 807 258 8 50 chr6 139204826 139205086 -43210156 - MIR SINE MIR -3 259 11 29 47 0 0 chr6 139205311 139205354 -43209888 + AT_rich Low_complexity Low_complexity 1 43 0 1822 114 0 0 chr6 139205406 139205642 -43209600 - AluSx SINE Alu -40 272 37 2310 126 0 3 chr6 139206015 139206373 -43208869 + L1PA14 LINE L1 5805 6161 0 21 0 0 0 chr6 139209408 139209429 -43205813 + AT_rich Low_complexity Low_complexity 1 21 0 1657 187 0 35 chr6 139209431 139209746 -43205496 + AluJo SINE Alu 1 304 -8 3944 13 0 4 chr6 139210016 139210515 -43204727 + L1PA2 LINE L1 5702 6155 0 1503 185 11 11 chr6 139210677 139210947 -43204295 - AluJo SINE Alu -18 294 25 640 347 4 16 chr6 139210988 139211230 -43204012 + MIR SINE MIR 2 240 -22 471 291 104 32 chr6 139211341 139211561 -43203681 + MIR SINE MIR 7 242 -20 240 100 0 0 chr6 139211613 139211653 -43203589 + (CAATT)n Simple_repeat Simple_repeat 1 40 0 334 254 24 117 chr6 139214110 139214315 -43200927 + MER5A DNA MER1_type 2 187 -2 319 377 55 17 chr6 139215145 139215597 -43199645 - L2 LINE L2 -32 3240 2727 1053 291 52 9 chr6 139215937 139216357 -43198885 + LTR16C LTR ERVL 37 474 -17 849 71 0 0 chr6 139216560 139216673 -43198569 + L1PA8 LINE L1 3964 4076 -2070 9232 83 1 2 chr6 139216792 139218879 -43196363 + L1PA8 LINE L1 4072 6172 0 2226 107 3 3 chr6 139219033 139219343 -43195899 + AluSg SINE Alu 1 310 0 418 262 240 33 chr6 139219349 139219532 -43195710 - MIR SINE MIR -8 254 34 22 56 0 0 chr6 139221783 139221819 -43193423 + AT_rich Low_complexity Low_complexity 1 36 0 850 101 0 0 chr6 139221926 139222035 -43193207 - AluJb SINE Alu -12 300 192 23 0 0 0 chr6 139222287 139222310 -43192932 + AT_rich Low_complexity Low_complexity 1 23 0 383 237 0 31 chr6 139224356 139224453 -43190789 - MIR SINE MIR 0 262 169 795 281 97 103 chr6 139224519 139225555 -43189687 - L2 LINE L2 -1 3312 2302 214 170 106 0 chr6 139225546 139225593 -43189649 - MIR SINE MIR -147 115 64 * 239 250 0 0 chr6 139225730 139225786 -43189456 - LTR67 LTR ERVL -8 549 494 189 336 45 30 chr6 139226145 139226279 -43188963 + L2 LINE L2 2254 2389 -925 194 298 113 40 chr6 139227206 139227357 -43187885 + MIR3 SINE MIR 5 166 -42 626 242 91 12 chr6 139227644 139227809 -43187433 - MIR SINE MIR -6 256 79 30 83 0 0 chr6 139228535 139228607 -43186635 + AT_rich Low_complexity Low_complexity 1 72 0 222 37 0 0 chr6 139228681 139228708 -43186534 + (A)n Simple_repeat Simple_repeat 1 27 0 685 286 52 28 chr6 139228751 139228999 -43186243 + MIR SINE MIR 9 262 0 190 289 24 72 chr6 139229206 139229289 -43185953 + L2 LINE L2 3194 3272 0 2210 116 3 0 chr6 139229487 139229780 -43185462 - AluSp SINE Alu -19 294 1 25 0 0 0 chr6 139231645 139231670 -43183572 + AT_rich Low_complexity Low_complexity 1 25 0 271 290 99 0 chr6 139231819 139231950 -43183292 + MIR SINE MIR 119 262 0 340 329 71 6 chr6 139233239 139233409 -43181833 + MLT1L LTR MaLR 353 533 -82 479 237 26 7 chr6 139233413 139233565 -43181677 + L1MEc LINE L1 2057 2211 -4614 212 302 123 28 chr6 139234076 139234182 -43181060 + L2 LINE L2 3155 3270 -2 2248 98 10 3 chr6 139234391 139234698 -43180544 - AluSx SINE Alu -3 309 1 2152 102 0 3 chr6 139235217 139235511 -43179731 - AluSg SINE Alu -17 293 1 391 351 34 64 chr6 139235531 139235827 -43179415 + L1MEd LINE L1 947 1233 -4886 830 263 67 105 chr6 139236280 139236965 -43178277 + L1MEc LINE L1 485 1143 -5399 405 277 67 32 chr6 139237010 139237324 -43177918 + L1MEc LINE L1 2362 2686 -3960 818 210 112 0 chr6 139237958 139238191 -43177051 + L1MB7 LINE L1 5896 6154 -30 2315 136 48 10 chr6 139238191 139238587 -43176655 - MSTA LTR MaLR 0 428 18 310 265 147 0 chr6 139238695 139238797 -43176445 - ERVL LTR ERVL -1061 4703 4587 41292 45 2 1 chr6 139238800 139244794 -43170448 + L1PA4 LINE L1 4 6004 -151 28 0 0 0 chr6 139245437 139245465 -43169777 + AT_rich Low_complexity Low_complexity 1 28 0 555 245 56 14 chr6 139245499 139245642 -43169600 + HAL1 LINE L1 408 556 -1951 361 306 22 0 chr6 139245670 139245804 -43169438 + HAL1 LINE L1 641 777 -1730 192 77 0 0 chr6 139245917 139245943 -43169299 + (TAA)n Simple_repeat Simple_repeat 2 27 0 350 258 47 0 chr6 139245957 139246085 -43169157 + HAL1 LINE L1 2038 2171 -336 23 33 0 0 chr6 139246310 139246340 -43168902 + AT_rich Low_complexity Low_complexity 1 30 0 2329 113 9 6 chr6 139246705 139247041 -43168201 - MER1B DNA MER1_type 0 337 1 533 242 124 12 chr6 139247170 139247331 -43167911 - MIR SINE MIR -34 228 50 379 288 87 38 chr6 139248251 139248435 -43166807 - L3 LINE CR1 -75 1502 1310 278 267 175 17 chr6 139249037 139249157 -43166085 - MER5B DNA MER1_type -39 139 1 180 0 0 0 chr6 139250479 139250499 -43164743 + (TAA)n Simple_repeat Simple_repeat 2 21 0 305 354 52 14 chr6 139251273 139251485 -43163757 - L2 LINE L2 -459 2855 2636 345 151 82 14 chr6 139251489 139251562 -43163680 + MIR SINE MIR 84 161 -101 268 304 0 25 chr6 139251714 139251793 -43163449 - L2 LINE L2 0 3272 3196 327 143 22 11 chr6 139252363 139252377 -43162865 + (TA)n Simple_repeat Simple_repeat 2 14 -79 2304 111 0 0 chr6 139252377 139252674 -43162568 + AluSc SINE Alu 1 297 -12 327 143 22 11 chr6 139252674 139252750 -43162492 + (TA)n Simple_repeat Simple_repeat 14 93 0 1274 239 120 23 chr6 139252870 139253313 -43161929 + MLT1D LTR MaLR 12 497 -8 312 233 108 50 chr6 139253492 139253612 -43161630 - L2 LINE L2 -18 3295 3169 972 317 89 85 chr6 139253921 139255096 -43160146 - L2 LINE L2 -449 2865 1686 450 338 260 35 chr6 139255160 139255645 -43159597 - L3 LINE CR1 -1 1576 983 467 309 24 0 chr6 139256229 139256355 -43158887 - L2 LINE L2 -1 3312 3184 493 229 18 9 chr6 139257205 139257314 -43157928 - MER81 DNA DNA -1 113 4 644 237 53 12 chr6 139257325 139257494 -43157748 + MER45A DNA AcHobo 2 177 -1 417 306 118 22 chr6 139257504 139257733 -43157509 - MIR SINE MIR -10 252 2 201 39 0 0 chr6 139259055 139259081 -43156161 + (CA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr6 139259174 139259195 -43156047 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 139260544 139260566 -43154676 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr6 139260568 139260605 -43154637 + (GA)n Simple_repeat Simple_repeat 2 38 0 766 203 57 0 chr6 139261319 139261496 -43153746 + MER5A DNA MER1_type 1 187 -2 1210 216 104 71 chr6 139261703 139261851 -43153391 - MLT1F LTR MaLR 0 593 451 2257 75 39 23 chr6 139261851 139262157 -43153085 + AluY SINE Alu 1 311 0 1210 216 104 71 chr6 139262157 139262505 -43152737 - MLT1F LTR MaLR -142 451 12 1920 99 85 3 chr6 139264601 139264884 -43150358 + AluSx SINE Alu 1 306 -6 271 252 100 28 chr6 139265210 139265528 -43149714 + LTR16A1 LTR ERVL 12 440 -10 350 336 104 55 chr6 139265553 139265919 -43149323 + L2 LINE L2 2922 3305 -8 2172 215 73 11 chr6 139266716 139267289 -43147953 + MER90 LTR ERV1 6 614 0 2084 126 7 13 chr6 139268257 139268559 -43146683 + AluSc SINE Alu 1 300 -9 713 274 28 39 chr6 139268570 139268657 -43146585 + MIR SINE MIR 2 89 -173 2173 168 7 55 chr6 139268657 139269073 -43146169 + MSTD LTR MaLR 1 396 0 713 274 28 39 chr6 139269073 139269240 -43146002 + MIR SINE MIR 89 253 -9 195 69 0 0 chr6 139269338 139269367 -43145875 + (TA)n Simple_repeat Simple_repeat 2 30 0 1613 177 23 34 chr6 139269900 139270077 -43145165 - MLT1A2 LTR MaLR -17 357 184 387 41 0 0 chr6 139270077 139270126 -43145116 + (CA)n Simple_repeat Simple_repeat 2 50 0 1613 177 23 34 chr6 139270126 139270299 -43144943 - MLT1A2 LTR MaLR -190 184 11 586 247 86 14 chr6 139270464 139270743 -43144499 - HsTC2 DNA Tc2 0 1900 1602 235 257 157 0 chr6 139270903 139270973 -43144269 - L2 LINE L2 -4 3268 3188 841 133 52 0 chr6 139271128 139271263 -43143979 + FRAM SINE Alu 21 162 -14 390 289 43 58 chr6 139271264 139271541 -43143701 - L1ME LINE L1 -477 5644 5372 318 208 52 19 chr6 139271545 139271699 -43143543 + (TA)n Simple_repeat Simple_repeat 1 159 0 273 300 103 25 chr6 139272920 139273091 -43142151 - MIR3 SINE MIR -64 144 10 181 297 162 0 chr6 139273329 139273403 -43141839 + L2 LINE L2 2792 2877 -437 649 228 110 64 chr6 139273514 139273733 -43141509 + MIR SINE MIR 14 242 -20 426 313 92 13 chr6 139274346 139274520 -43140722 - MIR SINE MIR -70 192 5 305 311 102 67 chr6 139275562 139275845 -43139397 - L2 LINE L2 -37 3235 2943 388 225 157 39 chr6 139277436 139277614 -43137628 + MLT1J1 LTR MaLR 6 151 -295 286 308 10 19 chr6 139278610 139278714 -43136528 + L2 LINE L2 2989 3091 -181 233 276 13 0 chr6 139279084 139279160 -43136082 + L1ME LINE L1 5669 5745 -376 948 176 38 164 chr6 139279166 139279592 -43135650 - MLT1A2 LTR MaLR 0 374 3 234 246 0 0 chr6 139279594 139279651 -43135591 + L1ME LINE L1 5746 5802 -319 22 0 0 0 chr6 139279717 139279739 -43135503 + AT_rich Low_complexity Low_complexity 1 22 0 2174 96 3 30 chr6 139279915 139280217 -43135025 - AluSg SINE Alu -16 294 1 4908 72 26 8 chr6 139280260 139280915 -43134327 + PABL_B LTR ERV1 1 667 0 26 0 0 0 chr6 139282365 139282391 -43132851 + AT_rich Low_complexity Low_complexity 1 26 0 366 315 78 23 chr6 139282805 139283012 -43132230 + MIR SINE MIR 19 237 -25 565 286 109 11 chr6 139283137 139283420 -43131822 + MER46C DNA MER2_type 24 334 -4 4606 179 48 25 chr6 139283560 139285492 -43129750 - L1MA10 LINE L1 -2 6332 4360 2473 145 27 20 chr6 139285722 139286164 -43129078 + MER65A LTR ERV1 1 445 0 1713 157 91 0 chr6 139286759 139287045 -43128197 - AluJb SINE Alu 0 312 1 210 256 11 11 chr6 139288900 139288990 -43126252 + (TTA)n Simple_repeat Simple_repeat 3 92 0 399 288 121 27 chr6 139289074 139289480 -43125762 + L1ME4a LINE L1 5677 6120 -1 311 109 36 0 chr6 139290578 139290633 -43124609 + MADE1 DNA Mariner 24 80 0 247 329 13 0 chr6 139291252 139291328 -43123914 + GA-rich Low_complexity Low_complexity 3 79 0 3503 51 9 18 chr6 139292353 139292801 -43122441 + MLT2A1 LTR ERVL 1 444 0 429 262 41 0 chr6 139293544 139293666 -43121576 + L1ME3A LINE L1 6039 6165 -5 1360 209 124 3 chr6 139294896 139295227 -43120015 + MLT1A2 LTR MaLR 4 374 0 215 140 60 20 chr6 139295361 139295411 -43119831 + GA-rich Low_complexity Low_complexity 2 53 0 393 331 87 22 chr6 139295623 139295989 -43119253 + L1ME LINE L1 5254 5642 -528 206 32 32 0 chr6 139296111 139296142 -43119100 + (TA)n Simple_repeat Simple_repeat 1 32 0 26 0 0 0 chr6 139296249 139296275 -43118967 + AT_rich Low_complexity Low_complexity 1 26 0 21093 96 7 13 chr6 139297710 139299820 -43115422 + L1PA8 LINE L1 2188 4255 -1917 2843 13 0 0 chr6 139299820 139300129 -43115113 - AluY SINE Alu -2 309 1 21093 96 7 13 chr6 139300129 139302033 -43113209 + L1PA8 LINE L1 4255 6169 -3 203 118 39 39 chr6 139302235 139302286 -43112956 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 23 54 0 0 chr6 139302813 139302850 -43112392 + AT_rich Low_complexity Low_complexity 1 37 0 2113 134 44 16 chr6 139303938 139304303 -43110939 - THE1C LTR MaLR 0 375 1 1011 281 116 7 chr6 139304710 139305158 -43110084 - L1ME3A LINE L1 -188 5982 5486 837 278 43 20 chr6 139305164 139305556 -43109686 - L1ME3A LINE L1 -861 5285 4885 1378 243 48 18 chr6 139305576 139306022 -43109220 - MLT1C LTR MaLR -2 465 1 6600 123 30 15 chr6 139306041 139307094 -43108148 - MER11C LTR ERVK -2 1069 1 433 265 82 14 chr6 139307512 139307659 -43107583 - MIR3 SINE MIR -21 187 31 435 289 58 0 chr6 139307751 139307872 -43107370 - FLAM_A SINE Alu -3 130 3 198 103 0 0 chr6 139309286 139309315 -43105927 + (TA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr6 139309416 139309440 -43105802 + AT_rich Low_complexity Low_complexity 1 24 0 231 250 234 0 chr6 139309835 139309959 -43105283 - MIR SINE MIR 0 262 110 380 352 22 28 chr6 139310215 139310394 -43104848 + MIR SINE MIR 2 179 -83 1054 316 45 20 chr6 139311550 139312040 -43103202 + LTR33 LTR ERVL 12 513 -8 2212 171 48 10 chr6 139312379 139312794 -43102448 - MSTB1 LTR MaLR 0 432 2 1990 138 14 0 chr6 139312841 139313131 -43102111 + AluSg SINE Alu 1 294 -16 218 344 102 8 chr6 139313390 139313518 -43101724 + L2 LINE L2 3133 3272 0 458 201 247 7 chr6 139314091 139314245 -43100997 - MIR SINE MIR -33 229 39 783 191 101 26 chr6 139314764 139314953 -43100289 - MLT1C LTR MaLR -256 211 9 25 31 0 0 chr6 139315838 139315870 -43099372 + AT_rich Low_complexity Low_complexity 1 32 0 374 316 110 7 chr6 139316953 139317107 -43098135 + MIR3 SINE MIR 14 184 -24 1536 121 8 0 chr6 139317697 139317946 -43097296 + L1MA2 LINE L1 6054 6304 0 2051 189 70 33 chr6 139318050 139318537 -43096705 - MLT1D LTR MaLR 0 505 1 234 0 0 0 chr6 139318770 139318796 -43096446 + (TA)n Simple_repeat Simple_repeat 2 27 0 2193 66 0 11 chr6 139320070 139320356 -43094886 - AluY SINE Alu -1 310 28 621 238 26 0 chr6 139320362 139320513 -43094729 - L1MA10 LINE L1 0 6334 6180 187 346 23 23 chr6 139320870 139321000 -43094242 + L2 LINE L2 1797 1926 -1388 1097 128 22 0 chr6 139321235 139321415 -43093827 + L1MA5 LINE L1 6115 6298 -2 23 33 0 0 chr6 139321475 139321505 -43093737 + AT_rich Low_complexity Low_complexity 1 30 0 2452 133 56 22 chr6 139321613 139322025 -43093217 + MSTA LTR MaLR 3 428 0 21 57 0 0 chr6 139323534 139323569 -43091673 + AT_rich Low_complexity Low_complexity 1 35 0 1713 181 0 20 chr6 139324021 139324320 -43090922 - AluJo SINE Alu -17 295 3 323 323 32 16 chr6 139324344 139324468 -43090774 + L1MC4 LINE L1 6580 6705 -1337 22 56 0 0 chr6 139324689 139324725 -43090517 + AT_rich Low_complexity Low_complexity 1 36 0 282 302 16 70 chr6 139325164 139325293 -43089949 + L2 LINE L2 3192 3313 0 389 95 16 0 chr6 139326243 139326306 -43088936 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 299 230 20 70 chr6 139326377 139326477 -43088765 + MIR SINE MIR 8 102 -160 291 296 80 11 chr6 139326793 139326881 -43088361 + L2 LINE L2 3154 3247 -25 933 107 0 0 chr6 139326895 139327035 -43088207 + (GGAA)n Simple_repeat Simple_repeat 2 141 0 231 307 61 37 chr6 139327277 139327440 -43087802 - MER112 DNA MER1_type -4 256 90 225 0 0 0 chr6 139327448 139327473 -43087769 + (TG)n Simple_repeat Simple_repeat 2 26 0 2950 169 22 11 chr6 139328409 139328949 -43086293 + MER89 LTR ERV1 13 558 -1 1152 209 117 11 chr6 139329128 139329401 -43085841 + AluJo SINE Alu 1 302 0 250 118 0 0 chr6 139329401 139329435 -43085807 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 1134 79 26 4 chr6 139329435 139329679 -43085563 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 25 0 0 0 chr6 139330003 139330028 -43085214 + AT_rich Low_complexity Low_complexity 1 25 0 4974 144 27 30 chr6 139330576 139331507 -43083735 + L1MA4 LINE L1 5372 6299 -1 236 325 79 18 chr6 139332312 139332426 -43082816 + L2 LINE L2 2934 3054 -218 200 163 23 0 chr6 139332590 139332633 -43082609 + GA-rich Low_complexity Low_complexity 2 45 0 1999 228 76 63 chr6 139333695 139334326 -43080916 + MLT1E1 LTR MaLR 8 646 -8 3378 213 108 15 chr6 139334519 139335378 -43079864 + Charlie1a DNA MER1_type 38 976 -479 3917 133 116 54 chr6 139335379 139336197 -43079045 + L1MA9 LINE L1 5283 6151 -161 228 67 0 0 chr6 139336197 139336227 -43079015 + (CA)n Simple_repeat Simple_repeat 1 30 0 1831 190 35 63 chr6 139336257 139336767 -43078475 + Charlie1a DNA MER1_type 960 1455 0 1588 178 53 27 chr6 139338310 139338648 -43076594 + MLT1B LTR MaLR 1 347 -43 304 239 109 72 chr6 139339265 139339403 -43075839 + HAL1 LINE L1 900 1042 -1465 1159 260 69 92 chr6 139339412 139339613 -43075629 - MLT1E LTR MaLR 0 593 389 1782 115 4 4 chr6 139339613 139339857 -43075385 + AluSx SINE Alu 41 284 -28 303 93 0 0 chr6 139339860 139339903 -43075339 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1159 260 69 92 chr6 139339903 139340304 -43074938 - MLT1E LTR MaLR -206 387 1 425 247 63 79 chr6 139340621 139340761 -43074481 + MIR SINE MIR 69 207 -55 2851 156 6 60 chr6 139340761 139341307 -43073935 + MLT2B1 LTR ERVL 5 520 0 425 247 63 79 chr6 139341307 139341356 -43073886 + MIR SINE MIR 207 255 -7 1821 104 29 39 chr6 139342025 139342304 -43072938 - AluSx SINE Alu 0 312 37 22 80 0 0 chr6 139343027 139343077 -43072165 + AT_rich Low_complexity Low_complexity 1 50 0 2194 97 0 7 chr6 139344148 139344447 -43070795 + AluSg SINE Alu 1 297 -13 279 0 0 0 chr6 139344730 139344761 -43070481 + (CA)n Simple_repeat Simple_repeat 2 32 0 540 258 0 0 chr6 139345817 139345995 -43069247 + (TG)n Simple_repeat Simple_repeat 1 178 0 2099 75 4 0 chr6 139346513 139346799 -43068443 + AluSp SINE Alu 30 316 0 2213 272 130 28 chr6 139346888 139347982 -43067260 - L2 LINE L2 0 3313 2112 208 259 86 62 chr6 139347964 139348045 -43067197 + L3 LINE CR1 385 467 -1110 * 222 37 0 0 chr6 139348402 139348429 -43066813 + (A)n Simple_repeat Simple_repeat 1 27 0 1590 177 60 12 chr6 139348642 139348975 -43066267 - MLT1A1 LTR MaLR -16 349 1 256 238 0 16 chr6 139349815 139349878 -43065364 + (TA)n Simple_repeat Simple_repeat 1 62 0 487 228 276 0 chr6 139349883 139350006 -43065236 - MIR SINE MIR -99 163 7 4655 153 80 1 chr6 139350147 139351075 -43064167 - L1MA8 LINE L1 -3 6288 5288 408 155 119 0 chr6 139352716 139352800 -43062442 + L1PA15-16 LINE L1 144 237 -6612 4623 245 48 6 chr6 139352918 139354440 -43060802 + L1P LINE L1 2191 3776 -2370 2190 126 0 0 chr6 139354604 139354906 -43060336 + AluSg SINE Alu 1 302 -8 316 275 184 0 chr6 139354982 139355091 -43060151 + MIR SINE MIR 27 155 -107 1994 112 60 35 chr6 139356553 139356919 -43058323 + THE1C LTR MaLR 1 375 0 240 225 157 22 chr6 139356969 139357058 -43058184 + L2 LINE L2 3171 3271 -1 452 222 170 7 chr6 139359156 139359291 -43055951 + MIR SINE MIR 29 185 -77 195 329 0 14 chr6 139359333 139359403 -43055839 + MIR SINE MIR 192 260 -2 23 54 0 0 chr6 139360392 139360429 -43054813 + AT_rich Low_complexity Low_complexity 1 37 0 28 61 0 0 chr6 139360803 139360852 -43054390 + AT_rich Low_complexity Low_complexity 1 49 0 386 347 129 0 chr6 139361361 139361586 -43053656 + MIR SINE MIR 3 256 -6 460 310 71 73 chr6 139361818 139362367 -43052875 + LTR67 LTR ERVL 3 550 -7 981 174 53 0 chr6 139362673 139362863 -43052379 + L1PA16 LINE L1 5962 6161 -5 29012 116 10 55 chr6 139362878 139369327 -43045915 + L1PA7 LINE L1 10 6152 -2 570 144 0 0 chr6 139369745 139369849 -43045393 + L1MA9 LINE L1 5146 5249 -897 2405 157 30 34 chr6 139369871 139369999 -43045243 + L1MA9 LINE L1 5782 5909 -403 2254 153 75 2 chr6 139369999 139370398 -43044844 - MSTB1 LTR MaLR 0 432 5 2405 157 30 34 chr6 139370398 139370797 -43044445 + L1MA9 LINE L1 5909 6307 -5 321 249 74 8 chr6 139371895 139372069 -43043173 + MLT1L LTR MaLR 391 605 -8 305 212 88 0 chr6 139372242 139372374 -43042868 - MER113 DNA MER1_type? -303 218 75 1529 214 25 72 chr6 139372374 139372628 -43042614 - MLT1C LTR MaLR -2 465 243 303 28 0 0 chr6 139372628 139372664 -43042578 + (TG)n Simple_repeat Simple_repeat 2 37 0 1529 214 25 72 chr6 139372664 139372895 -43042347 - MLT1C LTR MaLR -224 243 3 1711 128 58 50 chr6 139373343 139373403 -43041839 - MER7A DNA MER2_type -2693 345 287 3619 56 0 2 chr6 139373403 139373852 -43041390 + LTR7 LTR ERV1 1 448 -2 1711 128 58 50 chr6 139373852 139374134 -43041108 - MER7A DNA MER2_type -2751 287 2 706 262 13 39 chr6 139375145 139375374 -43039868 + MER58A DNA MER1_type 1 223 -1 934 266 38 1 chr6 139375926 139376170 -43039072 - MIR SINE MIR -2 260 9 298 350 61 61 chr6 139376367 139376613 -43038629 - L2 LINE L2 -835 2479 2234 216 325 19 106 chr6 139378672 139378832 -43036410 + L2 LINE L2 3039 3184 -88 1353 187 83 85 chr6 139378922 139379382 -43035860 + MLT1C LTR MaLR 7 465 -2 303 292 104 52 chr6 139379569 139379750 -43035492 + L2 LINE L2 2995 3194 -119 5960 97 20 19 chr6 139379750 139380781 -43034461 + L1PA11 LINE L1 5136 6172 -2 303 292 104 52 chr6 139380781 139380849 -43034393 + L2 LINE L2 3194 3257 -56 856 256 192 32 chr6 139381592 139382029 -43033213 + MLT1H LTR MaLR 41 547 -2 2487 81 0 0 chr6 139382518 139382826 -43032416 + AluY SINE Alu 1 308 -3 2185 113 0 0 chr6 139382943 139383254 -43031988 + AluSx SINE Alu 1 311 0 210 365 0 21 chr6 139383925 139384021 -43031221 + GA-rich Low_complexity Low_complexity 1 94 0 243 273 15 0 chr6 139384856 139384922 -43030320 + MIR SINE MIR 183 249 -13 725 214 34 17 chr6 139385796 139385974 -43029268 - MER63A DNA MER1_type -28 182 2 273 309 88 15 chr6 139387089 139387225 -43028017 + MLT1H LTR MaLR 1 146 -403 281 262 65 28 chr6 139387377 139387484 -43027758 + MLT1H LTR MaLR 439 549 0 1315 202 151 39 chr6 139388434 139388845 -43026397 - MSTB2 LTR MaLR 0 457 1 800 290 14 5 chr6 139388936 139389150 -43026092 - MIR SINE MIR -45 217 2 229 219 31 31 chr6 139389272 139389336 -43025906 + THE1B LTR MaLR 202 265 -99 302 51 0 0 chr6 139389376 139389415 -43025827 + L1PA7 LINE L1 6 44 -6417 10606 66 5 4 chr6 139389418 139391797 -43023445 + L1PA7 LINE L1 4122 6497 0 24 32 0 0 chr6 139391889 139391920 -43023322 + AT_rich Low_complexity Low_complexity 1 31 0 356 261 92 0 chr6 139391953 139392106 -43023136 - L1M4 LINE L1 -2369 3777 3611 442 292 49 32 chr6 139392138 139392417 -43022825 - L2 LINE L2 -26 3287 2938 1550 158 3 34 chr6 139392717 139393008 -43022234 + MER65A LTR ERV1 1 282 -163 210 23 45 45 chr6 139393169 139393213 -43022029 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 349 283 3 133 chr6 139393300 139393446 -43021796 + L2 LINE L2 2002 2091 -1223 2001 148 3 0 chr6 139393446 139393736 -43021506 - AluJb SINE Alu -21 291 1 349 283 3 133 chr6 139393736 139393889 -43021353 + L2 LINE L2 2091 2262 -1052 227 240 0 0 chr6 139393889 139393939 -43021303 + MER45 DNA AcHobo 1532 1581 0 1053 206 124 1 chr6 139393978 139394301 -43020941 - MER93a LTR ERV1 0 402 1 196 364 13 26 chr6 139395027 139395104 -43020138 + MIR SINE MIR 20 95 -113 188 291 55 0 chr6 139395121 139395176 -43020066 - MIR SINE MIR -66 142 85 2564 141 16 22 chr6 139395729 139396176 -43019066 + MER65A LTR ERV1 1 444 -1 243 0 0 0 chr6 139396625 139396652 -43018590 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2239 117 0 0 chr6 139396656 139396954 -43018288 - AluSx SINE Alu -14 298 1 2024 145 14 0 chr6 139398537 139398827 -43016415 - AluSx SINE Alu -18 294 1 1904 136 52 35 chr6 139399068 139399437 -43015805 - THE1C LTR MaLR 0 375 1 373 89 25 101 chr6 139399910 139399989 -43015253 + L1MA8 LINE L1 5705 5777 -523 330 191 22 22 chr6 139399999 139400177 -43015065 + (TA)n Simple_repeat Simple_repeat 2 179 0 1453 121 11 46 chr6 139400187 139400468 -43014774 + L1MA8 LINE L1 5794 6064 -227 3000 156 29 7 chr6 139400468 139401053 -43014189 - L1MA4 LINE L1 -7 6293 5696 380 277 34 7 chr6 139401062 139401261 -43013981 - L1MEc LINE L1 -5336 782 532 431 239 0 0 chr6 139401399 139401512 -43013730 - L1MB8 LINE L1 -2 6176 6064 1927 146 3 3 chr6 139401538 139401833 -43013409 - AluJo SINE Alu -4 308 14 2368 119 32 10 chr6 139401838 139402249 -43012993 - L1MB3 LINE L1 0 6183 5764 807 211 10 10 chr6 139402260 139402454 -43012788 - L1ME1 LINE L1 -114 6052 5859 246 186 0 93 chr6 139402688 139402774 -43012468 - L1MEc LINE L1 -5673 397 320 472 312 7 0 chr6 139402896 139403050 -43012192 - L1MEc LINE L1 -5905 165 11 332 222 49 0 chr6 139403342 139403423 -43011819 - MIR SINE MIR -3 259 175 325 202 0 58 chr6 139404125 139404229 -43011013 + L1ME4a LINE L1 5973 6070 -51 180 333 0 0 chr6 139404493 139404541 -43010701 + L2 LINE L2 3266 3313 0 1986 128 3 3 chr6 139405516 139405804 -43009438 + AluSx SINE Alu 1 288 -24 583 286 38 29 chr6 139405814 139406024 -43009218 + MIR SINE MIR 4 215 -47 1360 213 38 11 chr6 139407516 139407803 -43007439 - AluJo SINE Alu -6 306 12 210 37 0 0 chr6 139407825 139407852 -43007390 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 1990 150 0 0 chr6 139407852 139408133 -43007109 - AluSx SINE Alu -31 281 1 1407 201 7 56 chr6 139408286 139408589 -43006653 + AluJo SINE Alu 1 288 -24 288 0 0 0 chr6 139409280 139409312 -43005930 + (TG)n Simple_repeat Simple_repeat 2 33 0 293 232 148 13 chr6 139409403 139409558 -43005684 - L1ME4a LINE L1 -3 6118 5943 346 323 73 36 chr6 139410282 139410474 -43004768 - HAL1b LINE L1 -811 537 339 1485 246 132 93 chr6 139410541 139411573 -43003669 - MER52A LTR ERV1 -10 1745 1 1761 160 3 40 chr6 139412167 139412467 -43002775 - AluJo SINE Alu -20 292 4 1671 191 27 3 chr6 139413183 139413518 -43001724 + MER2 DNA MER2_type 2 344 0 201 189 0 0 chr6 139415099 139415136 -43000106 + L2 LINE L2 3272 3308 -5 240 248 111 17 chr6 139415380 139415497 -42999745 + L1ME4a LINE L1 5991 6118 -3 1607 179 38 7 chr6 139415772 139416063 -42999179 - AluSx SINE Alu -12 300 1 226 320 106 0 chr6 139416664 139416796 -42998446 + MIR SINE MIR 19 164 -44 1213 176 63 151 chr6 139417598 139418074 -42997168 + MLT1F1 LTR MaLR 2 435 -132 1027 244 48 90 chr6 139419381 139419947 -42995295 + MER34 LTR ERV1 1 542 0 348 362 20 20 chr6 139420608 139420760 -42994482 - MIR SINE MIR -12 250 99 1309 119 13 4 chr6 139420912 139421139 -42994103 - L1MA8 LINE L1 -6 6285 6057 3352 151 30 17 chr6 139421139 139421730 -42993512 + L1M4c LINE L1 1 599 -4729 386 153 14 14 chr6 139421731 139421803 -42993439 + L1M4c LINE L1 633 704 -4624 3020 167 28 13 chr6 139421812 139422430 -42992812 + L1MA4 LINE L1 5655 6281 -19 545 304 46 35 chr6 139422457 139422911 -42992331 + L1M4c LINE L1 1070 1528 -4802 2028 162 0 3 chr6 139423020 139423328 -42991914 + AluSx SINE Alu 1 307 -5 2163 100 49 26 chr6 139423424 139423774 -42991468 - THE1B LTR MaLR -6 358 1 1723 92 23 0 chr6 139423774 139424035 -42991207 + L1MA1 LINE L1 6029 6295 -7 2252 100 3 7 chr6 139424127 139424426 -42990816 - AluSx SINE Alu -14 298 1 1387 184 28 0 chr6 139427862 139428117 -42987125 - Tigger3(Golem) DNA MER2_type -2767 262 1 406 219 0 0 chr6 139428615 139428697 -42986545 - Tigger5 DNA MER2_type 0 2323 2242 380 224 0 0 chr6 139428687 139428763 -42986479 + Tigger5 DNA MER2_type 2242 2317 -6 * 420 215 0 0 chr6 139428765 139428844 -42986398 - Tigger5 DNA MER2_type -2244 79 1 2191 41 44 11 chr6 139428849 139429149 -42986093 - AluY SINE Alu 0 309 1 870 269 34 63 chr6 139429168 139429402 -42985840 + LTR16B LTR ERVL 5 227 -237 2205 153 11 19 chr6 139429402 139429780 -42985462 - THE1C LTR MaLR 0 375 1 870 269 34 63 chr6 139429780 139429895 -42985347 + LTR16B LTR ERVL 227 344 -120 663 158 40 164 chr6 139429907 139430261 -42984981 - MER33 DNA MER1_type -14 310 1 313 264 0 28 chr6 139430276 139430382 -42984860 + LTR16B LTR ERVL 362 464 0 264 376 69 20 chr6 139430446 139430693 -42984549 + L2 LINE L2 2716 2974 -340 21 0 0 0 chr6 139430755 139430776 -42984466 + AT_rich Low_complexity Low_complexity 1 21 0 1497 129 79 85 chr6 139430883 139431224 -42984018 + MER44D DNA MER2_type 1 609 0 2725 138 0 34 chr6 139431304 139431776 -42983466 + MLT2C2 LTR ERVL 1 456 -8 2676 129 54 31 chr6 139432114 139432593 -42982649 - LTR2B LTR ERV1 0 490 1 5110 161 26 28 chr6 139433056 139434130 -42981112 + L1MC1 LINE L1 5254 6325 -8 377 268 16 0 chr6 139434914 139435037 -42980205 - MER94 DNA DNA -5 129 5 2088 150 37 35 chr6 139435041 139435587 -42979655 + MLT2A2 LTR ERVL 5 554 0 422 167 0 0 chr6 139435675 139435759 -42979483 - MLT2B1 LTR ERVL 0 520 437 486 313 60 72 chr6 139435759 139436024 -42979218 + L3 LINE CR1 888 1149 -428 306 348 119 10 chr6 139436083 139436284 -42978958 + L3 LINE CR1 1338 1560 -17 1444 222 83 23 chr6 139436889 139437321 -42977921 + LTR40c LTR ERVL 3 460 -5 392 315 212 39 chr6 139438018 139438405 -42976837 - L2 LINE L2 -7 3306 2853 2302 147 32 27 chr6 139438772 139438838 -42976404 - Tigger2 DNA MER2_type -1 2717 2653 1924 116 65 0 chr6 139438838 139439114 -42976128 + AluSx SINE Alu 1 294 -18 2302 147 32 27 chr6 139439114 139439490 -42975752 - Tigger2 DNA MER2_type -65 2653 2273 440 113 0 0 chr6 139439488 139439550 -42975692 + MER8 DNA MER2_type 178 239 0 * 26 50 0 0 chr6 139439966 139440006 -42975236 + AT_rich Low_complexity Low_complexity 1 40 0 274 293 121 19 chr6 139441321 139441478 -42973764 - L2 LINE L2 -955 2359 2187 1524 163 44 30 chr6 139442733 139443028 -42972214 + AluJo SINE Alu 1 299 -13 311 197 165 16 chr6 139443593 139443720 -42971522 - MLT1J LTR MaLR -79 432 287 2076 170 75 8 chr6 139443813 139444214 -42971028 + MSTA LTR MaLR 1 428 0 1999 150 0 0 chr6 139444392 139444685 -42970557 + AluSx SINE Alu 1 293 -19 1936 114 78 31 chr6 139445812 139446170 -42969072 + THE1C LTR MaLR 1 375 0 1115 229 53 12 chr6 139446789 139447108 -42968134 + MLT1C LTR MaLR 136 467 0 199 250 196 27 chr6 139447110 139447258 -42967984 - L2 LINE L2 -100 3213 3041 1074 174 26 87 chr6 139447379 139447644 -42967598 - AluJb SINE Alu -17 295 47 3844 149 18 10 chr6 139447655 139448361 -42966881 - L1MA4 LINE L1 0 6300 5589 25 0 0 0 chr6 139448479 139448504 -42966738 + AT_rich Low_complexity Low_complexity 1 25 0 635 270 94 3 chr6 139448810 139449239 -42966003 - L2 LINE L2 -5 3308 2747 183 80 0 0 chr6 139449673 139449698 -42965544 + (A)n Simple_repeat Simple_repeat 1 25 0 565 89 0 0 chr6 139450185 139450264 -42964978 + MADE1 DNA Mariner 1 79 -1 293 356 48 0 chr6 139450686 139450790 -42964452 + MER91C DNA MER1_type 31 139 -1 1035 94 0 0 chr6 139450939 139451077 -42964165 + AluSg/x SINE Alu 164 301 -9 481 296 67 38 chr6 139451235 139451475 -42963767 + L2 LINE L2 2804 3050 -222 284 311 19 19 chr6 139452528 139452634 -42962608 + MIR3 SINE MIR 76 181 -27 2152 85 4 0 chr6 139452717 139452988 -42962254 - AluY SINE Alu -12 299 28 256 355 102 28 chr6 139455250 139455574 -42959668 + L2 LINE L2 2630 2977 -337 3013 161 37 15 chr6 139455653 139456199 -42959043 - MER74A LTR ERVL 0 558 1 3048 83 22 20 chr6 139457392 139457839 -42957403 - LTR7 LTR ERV1 -2 448 1 1646 158 76 0 chr6 139458331 139458465 -42956777 - L1MA9 LINE L1 -3 6309 6187 243 0 0 0 chr6 139458465 139458492 -42956750 + (TG)n Simple_repeat Simple_repeat 2 28 0 1646 158 76 0 chr6 139458492 139458687 -42956555 - L1MA9 LINE L1 -125 6187 5955 262 277 12 0 chr6 139458697 139458780 -42956462 - MER41C LTR ERV1 -85 469 386 7855 167 16 52 chr6 139458790 139461346 -42953896 - L1MA9 LINE L1 -348 5964 3507 4393 191 28 3 chr6 139461361 139462063 -42953179 - L1MB3 LINE L1 -4 6179 5496 288 0 0 0 chr6 139462063 139462095 -42953147 + (TG)n Simple_repeat Simple_repeat 1 32 0 4393 191 28 3 chr6 139462095 139463003 -42952239 - L1MB3 LINE L1 -687 5496 4534 318 106 0 0 chr6 139463026 139463073 -42952169 + (CGG)n Simple_repeat Simple_repeat 2 48 0 7290 68 12 18 chr6 139463384 139464882 -42950360 + SVA Other Other 217 1386 0 5977 222 32 32 chr6 139464883 139466803 -42948439 - L1MB3 LINE L1 -1598 4548 2629 23 0 0 0 chr6 139466952 139466975 -42948267 + AT_rich Low_complexity Low_complexity 1 23 0 238 306 166 45 chr6 139467840 139467997 -42947245 - MER5B DNA MER1_type -2 176 1 623 302 78 18 chr6 139468123 139468510 -42946732 + L1ME1 LINE L1 37 446 -5950 3123 210 65 60 chr6 139468578 139469710 -42945532 + L1ME1 LINE L1 4181 5315 -912 1791 176 0 21 chr6 139469710 139470000 -42945242 + AluJb SINE Alu 1 284 -28 3123 210 65 60 chr6 139470000 139470170 -42945072 + L1ME1 LINE L1 5315 5483 -744 507 126 63 63 chr6 139470171 139470282 -42944960 + MER74A LTR ERVL 1 111 -447 338 136 34 0 chr6 139470313 139470372 -42944870 - MER74A LTR ERVL -380 178 118 2325 103 0 0 chr6 139470384 139470686 -42944556 - AluSx SINE Alu -10 302 1 395 157 24 12 chr6 139470686 139470769 -42944473 + MER74A LTR ERVL 475 558 0 2682 194 67 37 chr6 139470772 139471516 -42943726 + L1ME1 LINE L1 5481 6403 0 534 200 35 41 chr6 139473046 139473216 -42942026 - MER69 DNA AcHobo 0 2526 2358 3424 247 71 30 chr6 139473223 139474168 -42941074 - MER69 DNA AcHobo -1314 1212 209 2315 97 0 3 chr6 139474168 139474467 -42940775 - AluSq SINE Alu -15 298 1 3424 247 71 30 chr6 139474467 139474685 -42940557 - MER69 DNA AcHobo -2317 209 1 2505 72 0 0 chr6 139475164 139475470 -42939772 + AluY SINE Alu 1 306 -5 399 200 48 9 chr6 139475633 139475738 -42939504 - MER103 DNA DNA -12 154 46 799 294 34 53 chr6 139475891 139476106 -42939136 + L2 LINE L2 2840 3049 -264 1744 182 56 16 chr6 139476106 139476479 -42938763 + MLT1B LTR MaLR 1 388 -2 799 294 34 53 chr6 139476479 139476586 -42938656 + L2 LINE L2 3049 3156 -157 592 281 50 20 chr6 139476651 139476850 -42938392 + MIR SINE MIR 48 252 -10 466 241 38 38 chr6 139476859 139476992 -42938250 + L2 LINE L2 3169 3301 -12 22 0 0 0 chr6 139478024 139478046 -42937196 + AT_rich Low_complexity Low_complexity 1 22 0 1560 212 21 9 chr6 139478099 139478523 -42936719 + L1ME1 LINE L1 4336 4764 -1382 253 203 14 14 chr6 139478526 139478595 -42936647 + L1PB1 LINE L1 129 197 -6666 * 14080 181 30 23 chr6 139478592 139483143 -42932099 + L1PB1 LINE L1 1392 5907 -960 1771 127 0 40 chr6 139483143 139483418 -42931824 + AluSq SINE Alu 37 300 -13 14080 181 30 23 chr6 139483418 139483927 -42931315 + L1PB1 LINE L1 5907 6509 -358 225 0 0 0 chr6 139483927 139483952 -42931290 + (CA)n Simple_repeat Simple_repeat 2 26 0 14080 181 30 23 chr6 139483952 139484314 -42930928 + L1PB1 LINE L1 6509 6867 0 3324 209 34 27 chr6 139484334 139485740 -42929502 + L1ME1 LINE L1 4745 6156 -10 258 333 105 26 chr6 139485847 139486265 -42928977 + L2 LINE L2 1985 2435 -879 639 260 154 5 chr6 139486269 139486477 -42928765 + MIR SINE MIR 6 244 -18 1947 138 7 10 chr6 139486958 139487254 -42927988 - AluJb SINE Alu -17 295 1 302 294 242 0 chr6 139488321 139488474 -42926768 + L2 LINE L2 3083 3272 0 211 286 0 0 chr6 139489568 139489624 -42925618 + (TG)n Simple_repeat Simple_repeat 1 56 0 279 270 48 0 chr6 139491525 139491588 -42923654 - L2 LINE L2 0 3313 3248 3951 75 20 11 chr6 139492106 139492653 -42922589 + MER41A LTR ERV1 1 552 -2 22 0 0 0 chr6 139493816 139493838 -42921404 + AT_rich Low_complexity Low_complexity 1 22 0 482 281 110 0 chr6 139494007 139494153 -42921089 + MIR SINE MIR 101 262 0 309 219 55 0 chr6 139494239 139494312 -42920930 - MIR SINE MIR -155 107 31 517 305 64 24 chr6 139495070 139495319 -42919923 + MIR SINE MIR 2 260 -2 214 280 115 45 chr6 139495781 139495938 -42919304 - L2 LINE L2 -1282 2032 1865 188 280 0 0 chr6 139496851 139496901 -42918341 - MIR SINE MIR -101 161 112 26 62 0 15 chr6 139498705 139498758 -42916484 + AT_rich Low_complexity Low_complexity 1 54 -10 1212 194 35 45 chr6 139498758 139499047 -42916195 - AluJo SINE Alu -15 287 2 26 62 0 15 chr6 139499047 139499058 -42916184 + AT_rich Low_complexity Low_complexity 54 64 0 460 308 101 22 chr6 139502839 139503115 -42912127 - L2 LINE L2 -428 2886 2589 1717 114 17 45 chr6 139505834 139506123 -42909119 + AluSc SINE Alu 1 281 -28 1767 114 12 0 chr6 139506314 139506560 -42908682 + AluSx SINE Alu 1 249 -63 1368 62 0 11 chr6 139506702 139506881 -42908361 - AluY SINE Alu -3 308 132 446 248 0 0 chr6 139507586 139507687 -42907555 - MIR SINE MIR -12 250 150 1863 143 0 11 chr6 139507799 139508078 -42907164 - AluJo SINE Alu -36 276 1 2123 200 33 6 chr6 139508086 139508577 -42906665 + Charlie1 DNA MER1_type 1528 2031 -730 476 155 10 21 chr6 139508584 139508681 -42906561 - L1MC2 LINE L1 -374 5970 5875 677 168 65 0 chr6 139508686 139508841 -42906401 + Charlie1 DNA MER1_type 2596 2760 -1 204 304 38 38 chr6 139510437 139510516 -42904726 + MIR SINE MIR 34 112 -96 231 61 0 0 chr6 139510564 139510597 -42904645 + (TC)n Simple_repeat Simple_repeat 2 34 0 396 0 0 0 chr6 139510597 139510641 -42904601 + (CA)n Simple_repeat Simple_repeat 1 44 0 1275 139 91 42 chr6 139510713 139511022 -42904220 - MER33 DNA MER1_type 0 324 1 299 274 35 0 chr6 139511536 139511649 -42903593 - Charlie8 DNA MER1_type -2159 258 142 398 315 35 41 chr6 139512229 139512357 -42902885 + L1ME LINE L1 5483 5610 -511 2214 104 0 13 chr6 139512357 139512656 -42902586 + AluSq SINE Alu 9 303 -10 398 315 35 41 chr6 139512656 139512841 -42902401 + L1ME LINE L1 5610 5794 -327 285 287 110 35 chr6 139514040 139514294 -42900948 + L2 LINE L2 1831 2103 -1211 291 254 156 16 chr6 139514580 139514702 -42900540 - MIR SINE MIR -107 155 17 216 189 0 0 chr6 139515544 139515581 -42899661 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 398 300 18 9 chr6 139516634 139516744 -42898498 + L2 LINE L2 3162 3272 0 181 264 28 56 chr6 139517175 139517247 -42897995 - MIR SINE MIR -105 103 34 1054 156 0 0 chr6 139517288 139517455 -42897787 + AluSg/x SINE Alu 134 300 -10 2262 101 0 7 chr6 139517464 139517771 -42897471 + AluSx SINE Alu 1 305 -7 252 241 0 0 chr6 139517939 139517997 -42897245 + L1ME LINE L1 4289 4346 -1800 553 272 169 26 chr6 139518033 139518813 -42896429 + L1ME LINE L1 4457 5348 -798 317 263 184 0 chr6 139518843 139518957 -42896285 + L1ME LINE L1 5347 5481 -683 233 215 31 0 chr6 139519227 139519292 -42895950 - L1ME LINE L1 -331 5790 5724 280 146 0 0 chr6 139519316 139519364 -42895878 + U5 snRNA snRNA 1 48 -68 279 245 176 57 chr6 139519390 139519806 -42895436 - L1ME LINE L1 -403 5718 5255 1332 131 10 5 chr6 139519947 139520146 -42895096 - AluSg/x SINE Alu -4 306 107 313 309 77 35 chr6 139520872 139521053 -42894189 + MIR SINE MIR 42 225 -37 324 246 45 68 chr6 139521288 139521437 -42893805 - MIR SINE MIR -43 165 20 1983 104 42 3 chr6 139521637 139521924 -42893318 + AluSx SINE Alu 1 298 -14 2569 48 0 6 chr6 139522918 139523231 -42892011 - AluY SINE Alu 0 311 1 2352 81 0 13 chr6 139523461 139523769 -42891473 - AluY SINE Alu -7 304 1 2219 100 0 10 chr6 139523987 139524287 -42890955 + AluSx SINE Alu 1 297 -15 495 215 185 0 chr6 139527314 139527449 -42887793 - MER5A DNA MER1_type -13 176 17 35 0 0 0 chr6 139527644 139527679 -42887563 + AT_rich Low_complexity Low_complexity 1 35 0 324 83 0 0 chr6 139529351 139529399 -42885843 + (TG)n Simple_repeat Simple_repeat 2 49 0 307 252 99 0 chr6 139530156 139530267 -42884975 - L1MC4 LINE L1 -1337 6705 6584 324 0 0 0 chr6 139530335 139530371 -42884871 + (CA)n Simple_repeat Simple_repeat 2 37 0 240 111 0 0 chr6 139530371 139530407 -42884835 + (TC)n Simple_repeat Simple_repeat 1 36 0 2298 97 0 7 chr6 139535865 139536164 -42879078 - AluSx SINE Alu -15 297 1 441 358 44 18 chr6 139537677 139537951 -42877291 + L2 LINE L2 2623 2903 -411 1790 154 47 7 chr6 139538163 139538461 -42876781 + AluSg SINE Alu 1 310 0 22 35 0 0 chr6 139540166 139540195 -42875047 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 139541538 139541563 -42873679 + AT_rich Low_complexity Low_complexity 1 25 0 2286 97 6 6 chr6 139546499 139546810 -42868432 + AluSq SINE Alu 1 311 -2 26 30 0 0 chr6 139548252 139548285 -42866957 + AT_rich Low_complexity Low_complexity 1 33 0 210 37 0 0 chr6 139549064 139549091 -42866151 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2216 98 0 3 chr6 139549093 139549379 -42865863 - AluSg SINE Alu -25 285 1 405 315 120 51 chr6 139549771 139550229 -42865013 + L2 LINE L2 2590 3067 -246 26 64 0 0 chr6 139551586 139551633 -42863609 + AT_rich Low_complexity Low_complexity 1 47 0 1158 160 43 22 chr6 139552275 139552506 -42862736 - MER46A DNA MER2_type 0 236 1 318 106 0 0 chr6 139553859 139553906 -42861336 + (CTTA)n Simple_repeat Simple_repeat 1 47 0 2105 94 14 17 chr6 139553907 139554194 -42861048 - AluSg SINE Alu -24 286 1 186 315 19 0 chr6 139554768 139554822 -42860420 + MIR SINE MIR 200 254 -8 21 0 0 0 chr6 139554850 139554871 -42860371 + AT_rich Low_complexity Low_complexity 1 21 0 615 244 61 6 chr6 139555217 139555381 -42859861 - MIR SINE MIR -26 236 64 593 209 9 0 chr6 139556649 139556764 -42858478 - FLAM_A SINE Alu -17 116 1 21 89 0 0 chr6 139557302 139557358 -42857884 + AT_rich Low_complexity Low_complexity 1 56 0 424 321 98 45 chr6 139559295 139559653 -42855589 + LTR33 LTR ERVL 115 491 -30 183 80 0 0 chr6 139560547 139560572 -42854670 + (A)n Simple_repeat Simple_repeat 1 25 0 1751 139 41 9 chr6 139561028 139561345 -42853897 + Ricksha DNA DNA 2490 2816 -38 257 328 132 6 chr6 139564135 139564355 -42850887 + MIR SINE MIR 16 261 -1 243 304 89 0 chr6 139564839 139564918 -42850324 + L2 LINE L2 3169 3254 -18 205 335 98 43 chr6 139566284 139566448 -42848794 - L3b LINE CR1 -148 1435 1263 213 186 34 0 chr6 139567118 139567177 -42848065 + A-rich Low_complexity Low_complexity 4 64 0 24 0 0 0 chr6 139567820 139567844 -42847398 + AT_rich Low_complexity Low_complexity 1 24 0 1708 175 7 10 chr6 139567868 139568165 -42847077 - AluJo SINE Alu -16 296 1 928 132 40 11 chr6 139568763 139568937 -42846305 - L1MA8 LINE L1 -2 6289 6111 21 0 0 0 chr6 139569179 139569200 -42846042 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 139569524 139569547 -42845695 + AT_rich Low_complexity Low_complexity 1 23 0 572 193 18 9 chr6 139569919 139570028 -42845214 - MER81 DNA DNA -4 110 1 208 233 0 47 chr6 139570106 139570192 -42845050 + GA-rich Low_complexity Low_complexity 3 84 0 186 246 29 58 chr6 139570391 139570460 -42844782 - L3b LINE CR1 -330 1253 1187 9162 80 11 3 chr6 139571961 139573979 -42841263 + L1PA7 LINE L1 4120 6154 0 27 49 0 0 chr6 139574171 139574212 -42841030 + AT_rich Low_complexity Low_complexity 1 41 0 2097 127 3 29 chr6 139574338 139574684 -42840558 + MER1B DNA MER1_type 1 337 0 22 56 0 0 chr6 139576241 139576277 -42838965 + AT_rich Low_complexity Low_complexity 1 36 0 375 326 78 7 chr6 139576474 139576615 -42838627 + MIR SINE MIR 26 176 -86 22 56 0 0 chr6 139577181 139577217 -42838025 + AT_rich Low_complexity Low_complexity 1 36 0 2724 3 0 0 chr6 139577467 139577760 -42837482 + AluYa5 SINE Alu 1 293 -18 1422 232 48 39 chr6 139577791 139578075 -42837167 + Charlie4a DNA MER1_type 31 322 -1639 2127 113 56 31 chr6 139578075 139578430 -42836812 + THE1B LTR MaLR 1 364 0 1422 232 48 39 chr6 139578430 139578607 -42836635 + Charlie4a DNA MER1_type 322 496 -12 194 284 119 0 chr6 139578911 139578978 -42836264 - L3b LINE CR1 0 1583 1509 473 228 141 11 chr6 139579139 139579299 -42835943 - MER5A DNA MER1_type 0 189 6 2476 152 12 55 chr6 139579699 139580205 -42835037 + MER31A LTR ERV1 2 485 0 843 239 15 0 chr6 139582643 139582844 -42832398 - MER3 DNA MER1_type -3 206 3 1738 168 3 47 chr6 139582934 139583255 -42831987 - AluJb SINE Alu -5 307 1 327 331 134 26 chr6 139583268 139583730 -42831512 + L2 LINE L2 2230 2741 -573 616 271 24 12 chr6 139584962 139585128 -42830114 + MIR SINE MIR 45 212 -50 458 299 153 39 chr6 139585435 139585997 -42829245 + L2 LINE L2 2329 2954 -360 3800 161 18 30 chr6 139586265 139586827 -42828415 - L1MB2 LINE L1 -2 6169 5617 2307 81 7 10 chr6 139586827 139587125 -42828117 - AluSq SINE Alu -16 297 1 3800 161 18 30 chr6 139587125 139587291 -42827951 - L1MB2 LINE L1 -554 5617 5450 234 276 92 0 chr6 139587466 139587542 -42827700 - L2 LINE L2 -1012 2302 2220 2510 85 0 0 chr6 139587627 139587934 -42827308 - AluSx SINE Alu -5 307 1 21 36 0 0 chr6 139589239 139589267 -42825975 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 139589779 139589800 -42825442 + AT_rich Low_complexity Low_complexity 1 21 0 1987 153 7 0 chr6 139590256 139590564 -42824678 + AluJb SINE Alu 1 310 -2 643 272 10 25 chr6 139590692 139590894 -42824348 + MIR SINE MIR 3 201 -61 227 250 125 0 chr6 139591271 139591335 -42823907 + MIR SINE MIR 118 189 -73 233 355 100 9 chr6 139591979 139592089 -42823153 - L2 LINE L2 -16 3256 3137 408 40 0 0 chr6 139592303 139592353 -42822889 + (CA)n Simple_repeat Simple_repeat 1 50 0 1227 161 83 0 chr6 139592770 139592988 -42822254 + MER46A DNA MER2_type 1 236 0 1033 218 141 42 chr6 139593119 139593664 -42821578 + L1ME LINE L1 1069 1667 -4863 501 293 116 0 chr6 139594323 139594504 -42820738 + MIR SINE MIR 47 248 -14 23 0 0 0 chr6 139594669 139594692 -42820550 + AT_rich Low_complexity Low_complexity 1 23 0 214 284 0 75 chr6 139595260 139595327 -42819915 - MIR SINE MIR -111 97 36 251 216 40 0 chr6 139596848 139596922 -42818320 + (TA)n Simple_repeat Simple_repeat 2 78 0 1685 166 0 33 chr6 139596922 139597223 -42818019 - AluJo SINE Alu -18 294 4 204 97 0 0 chr6 139597227 139597258 -42817984 + (T)n Simple_repeat Simple_repeat 1 31 0 232 278 0 0 chr6 139599158 139599212 -42816030 - MIR SINE MIR 0 262 209 206 289 12 84 chr6 139599348 139599412 -42815830 + MER5B DNA MER1_type 60 118 -60 1720 138 13 45 chr6 139599412 139599724 -42815518 - L1MC1 LINE L1 -11 6322 6021 206 289 12 84 chr6 139599724 139599742 -42815500 + MER5B DNA MER1_type 118 136 -42 1982 138 7 0 chr6 139599984 139600281 -42814961 + AluSg1 SINE Alu 1 299 -10 2252 95 0 3 chr6 139601703 139601998 -42813244 - AluSg SINE Alu -16 294 1 271 269 0 0 chr6 139602338 139602390 -42812852 + HAL1 LINE L1 1 52 -2455 1907 161 0 10 chr6 139602910 139603214 -42812028 - AluSx SINE Alu -11 301 1 23 0 0 0 chr6 139604390 139604413 -42810829 + AT_rich Low_complexity Low_complexity 1 23 0 5603 46 10 1 chr6 139605051 139605748 -42809494 - L1PA7 LINE L1 -3 6151 5449 399 41 0 0 chr6 139606604 139606653 -42808589 + (CA)n Simple_repeat Simple_repeat 2 50 0 226 201 65 45 chr6 139610943 139611097 -42804145 + L1ME LINE L1 2447 2603 -3937 301 337 123 2 chr6 139611182 139611589 -42803653 + L1ME LINE L1 2704 3159 -3381 1182 190 155 8 chr6 139611765 139612023 -42803219 + AluJo SINE Alu 1 296 -6 333 140 0 0 chr6 139612028 139612085 -42803157 + (GGGGA)n Simple_repeat Simple_repeat 5 61 0 1971 159 60 29 chr6 139612141 139612561 -42802681 + Tigger2a DNA MER2_type 2 434 0 463 279 202 28 chr6 139612614 139613411 -42801831 + L1ME LINE L1 3439 4374 -2166 25 0 0 0 chr6 139613424 139613449 -42801793 + AT_rich Low_complexity Low_complexity 1 25 0 1643 114 18 0 chr6 139613488 139613708 -42801534 + AluSg/x SINE Alu 69 292 -20 1967 119 29 29 chr6 139613758 139614069 -42801173 - AluSx SINE Alu -1 311 1 353 64 0 0 chr6 139614074 139614121 -42801121 + MADE1 DNA Mariner 34 80 0 1182 271 38 21 chr6 139614157 139614497 -42800745 + MLT1I LTR MaLR 46 391 -18 447 301 55 39 chr6 139614508 139614820 -42800422 + L1ME LINE L1 5800 6116 -448 1963 94 15 0 chr6 139615001 139615267 -42799975 + AluSg SINE Alu 23 292 -18 40 37 0 0 chr6 139615335 139615389 -42799853 + AT_rich Low_complexity Low_complexity 1 54 0 400 316 72 13 chr6 139615451 139615603 -42799639 - MIR3 SINE MIR -15 193 33 1224 206 25 117 chr6 139615799 139615880 -42799362 + MLT1A1 LTR MaLR 1 88 -277 1847 71 8 0 chr6 139615880 139616120 -42799122 + L1PA5 LINE L1 5910 6151 -3 1224 206 25 117 chr6 139616120 139616440 -42798802 + MLT1A1 LTR MaLR 88 365 0 2596 51 0 3 chr6 139616486 139616798 -42798444 - AluY SINE Alu 0 311 1 244 241 0 115 chr6 139616803 139616890 -42798352 + MIR SINE MIR 88 164 -98 639 180 0 0 chr6 139619979 139620090 -42795152 + FLAM_A SINE Alu 21 131 -11 1062 139 59 0 chr6 139620154 139620341 -42794901 - L1MB7 LINE L1 -13 6171 5974 453 146 24 0 chr6 139620341 139620418 -42794824 + L1MB7 LINE L1 6085 6168 -16 2237 116 0 22 chr6 139620615 139620934 -42794308 + AluSx SINE Alu 1 312 0 265 391 124 31 chr6 139621160 139622001 -42793241 - L2 LINE L2 -422 2892 1974 493 250 89 0 chr6 139623313 139623425 -42791817 + L2 LINE L2 3188 3309 -4 345 340 28 35 chr6 139623433 139623574 -42791668 - MIR3 SINE MIR -45 163 24 270 262 19 19 chr6 139624688 139624791 -42790451 + GA-rich Low_complexity Low_complexity 3 105 0 296 285 42 42 chr6 139625189 139625333 -42789909 + MLT1L LTR MaLR 41 184 -431 2261 115 0 3 chr6 139626454 139626767 -42788475 - AluSx SINE Alu 0 312 1 533 268 104 43 chr6 139626812 139627043 -42788199 + MIR SINE MIR 6 250 -12 288 188 0 0 chr6 139627102 139627166 -42788076 + (TAA)n Simple_repeat Simple_repeat 2 65 0 573 328 56 0 chr6 139627170 139627368 -42787874 - MIR SINE MIR -29 233 25 29 28 0 0 chr6 139627990 139628026 -42787216 + AT_rich Low_complexity Low_complexity 1 36 0 990 284 117 43 chr6 139628112 139628376 -42786866 + L1MD3 LINE L1 5353 5596 -2212 1464 86 50 14 chr6 139628376 139628598 -42786644 + MER30 DNA MER1_type 1 230 0 990 284 117 43 chr6 139628598 139628865 -42786377 + L1MD3 LINE L1 5596 5923 -1885 232 281 0 16 chr6 139628922 139628986 -42786256 + L1MD3 LINE L1 6610 6672 -1323 720 241 72 6 chr6 139629536 139629702 -42785540 + MER8 DNA MER2_type 1 177 -62 340 243 0 27 chr6 139629735 139629809 -42785433 - Tigger2a DNA MER2_type -361 73 2 3738 156 47 37 chr6 139633191 139633332 -42781910 - MER44D DNA MER2_type -1883 604 466 1813 158 0 32 chr6 139633332 139633642 -42781600 - AluJb SINE Alu -12 300 1 3738 156 47 37 chr6 139633642 139634225 -42781017 - MER44D DNA MER2_type -2021 466 1 2089 157 0 0 chr6 139634487 139634799 -42780443 + AluSx SINE Alu 1 312 0 1977 81 32 81 chr6 139635252 139635562 -42779680 + AluSg SINE Alu 1 295 -15 608 118 0 39 chr6 139635967 139636069 -42779173 + MER4A LTR ERV1 1 98 -566 1167 156 33 2 chr6 139636069 139636313 -42778929 + MER4A LTR ERV1 261 570 -94 1208 186 143 37 chr6 139636506 139636834 -42778408 + MLT1A2 LTR MaLR 1 363 -11 213 401 42 21 chr6 139636994 139637136 -42778106 - MIR SINE MIR -106 156 12 1226 115 27 123 chr6 139637159 139637420 -42777822 - AluYb8 SINE Alu 0 318 83 296 314 35 0 chr6 139637432 139637518 -42777724 - MIR3 SINE MIR -54 154 66 2222 94 0 14 chr6 139638187 139638499 -42776743 + AluSx SINE Alu 1 308 0 270 304 196 23 chr6 139639266 139639486 -42775756 - L2 LINE L2 -12 3301 3044 278 311 107 16 chr6 139639701 139639823 -42775419 - MIR3 SINE MIR -7 201 69 390 325 86 24 chr6 139641261 139641516 -42773726 - L2 LINE L2 -197 3075 2805 1918 156 6 29 chr6 139641649 139641964 -42773278 + AluSx SINE Alu 1 308 -4 1445 171 208 7 chr6 139643052 139643455 -42771787 + LTR54B LTR ERV1 1 484 -14 29 28 0 0 chr6 139644238 139644274 -42770968 + AT_rich Low_complexity Low_complexity 1 36 0 329 313 80 0 chr6 139645198 139645310 -42769932 - MIR SINE MIR -48 214 94 219 329 26 13 chr6 139645337 139645413 -42769829 + MIR SINE MIR 11 87 -175 869 162 54 54 chr6 139645760 139645945 -42769297 - Tigger3b DNA MER2_type 0 1241 1057 4174 136 78 4 chr6 139645951 139645965 -42769277 - Tigger3b DNA MER2_type -2188 840 828 1841 146 3 36 chr6 139645965 139646274 -42768968 - AluJb SINE Alu -13 299 1 4174 136 78 4 chr6 139646274 139647041 -42768201 - Tigger3b DNA MER2_type -2200 828 1 1254 207 135 94 chr6 139647458 139648066 -42767176 + LTR27 LTR ERV1 2 634 -2 593 139 0 9 chr6 139648292 139648407 -42766835 - L1MB8 LINE L1 -37 6141 6028 * 1165 218 49 9 chr6 139648398 139648746 -42766496 + L1MB7 LINE L1 3614 3975 -2171 1111 169 9 0 chr6 139648746 139648965 -42766277 + L1MB7 LINE L1 5343 5563 -617 1349 76 0 18 chr6 139649025 139649196 -42766046 - AluSg/x SINE Alu -9 303 136 369 151 67 76 chr6 139649197 139649316 -42765926 + L1MB7 LINE L1 6052 6169 -15 2233 183 69 0 chr6 139649317 139649808 -42765434 - L1MB7 LINE L1 -145 6039 5515 2052 128 0 0 chr6 139649856 139650138 -42765104 + AluSx SINE Alu 1 282 -30 366 23 0 0 chr6 139650138 139650181 -42765061 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 1775 184 0 10 chr6 139650276 139650580 -42764662 + AluJb SINE Alu 1 301 -11 2261 121 0 0 chr6 139651252 139651558 -42763684 + AluSx SINE Alu 1 306 -6 246 204 0 0 chr6 139651597 139651646 -42763596 - L2 LINE L2 0 3313 3265 526 222 65 68 chr6 139652441 139652484 -42762758 + L1MEc LINE L1 2078 2120 -4276 2012 150 0 0 chr6 139652484 139652777 -42762465 + AluSx SINE Alu 1 293 -19 526 222 65 68 chr6 139652777 139653026 -42762216 + L1MEc LINE L1 2120 2369 -4027 2219 90 0 17 chr6 139653273 139653563 -42761679 - AluSc SINE Alu -13 296 12 23 0 0 0 chr6 139654275 139654298 -42760944 + AT_rich Low_complexity Low_complexity 1 23 0 2007 86 45 28 chr6 139655079 139655369 -42759873 - AluSc SINE Alu -14 295 1 2617 98 34 5 chr6 139655835 139656222 -42759020 - MER48 LTR ERV1 0 398 1 703 45 11 0 chr6 139656246 139656335 -42758907 - HERVH48 LTR ERV1 -4267 2387 2298 488 132 22 11 chr6 139657157 139657248 -42757994 + MER4A LTR ERV1 1 92 -572 761 133 4 123 chr6 139657254 139657494 -42757748 + MER4A LTR ERV1 261 530 -134 2422 70 3 0 chr6 139657500 139657800 -42757442 + AluY SINE Alu 1 301 -10 838 101 0 0 chr6 139657802 139657911 -42757331 + AluSq/x SINE Alu 1 109 -203 342 109 0 0 chr6 139657911 139657966 -42757276 + Alu SINE Alu 248 302 0 * 930 133 0 13 chr6 139657962 139658112 -42757130 + MER4A LTR ERV1 517 664 0 180 0 0 0 chr6 139659038 139659058 -42756184 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 272 221 123 30 chr6 139659177 139659334 -42755908 + L1ME4a LINE L1 1185 6100 -1 431 288 36 14 chr6 139660486 139660625 -42754617 - MIR SINE MIR -40 222 81 246 254 0 18 chr6 139660618 139660673 -42754569 + MIR SINE MIR 40 93 -169 * 244 203 29 29 chr6 139662185 139662254 -42752988 - MIR3 SINE MIR -8 200 132 231 195 0 0 chr6 139663742 139663783 -42751459 + GA-rich Low_complexity Low_complexity 1 41 0 254 284 98 49 chr6 139665395 139665578 -42749664 + MIR3 SINE MIR 3 194 -14 197 271 0 34 chr6 139668123 139668182 -42747060 + L2 LINE L2 752 808 -2506 237 239 70 0 chr6 139668184 139668255 -42746987 + MER112 DNA MER1_type 4 79 -181 1729 126 4 4 chr6 139668495 139668750 -42746492 - AluSx SINE Alu -5 307 53 2024 120 7 27 chr6 139668872 139669173 -42746069 + AluSx SINE Alu 2 296 -16 577 264 278 3 chr6 139669258 139669611 -42745631 + L2 LINE L2 797 1246 -2068 1572 148 145 15 chr6 139669612 139669943 -42745299 + THE1C LTR MaLR 2 375 0 10013 105 10 35 chr6 139669943 139671557 -42743685 + THE1C-int LTR MaLR 1 1573 -7 1978 117 80 14 chr6 139671565 139671915 -42743327 + THE1C LTR MaLR 3 375 0 238 325 0 0 chr6 139671917 139672000 -42743242 + L2 LINE L2 1244 1326 -1988 2292 114 0 0 chr6 139672906 139673204 -42742038 - AluSx SINE Alu -14 298 1 215 304 0 0 chr6 139673565 139673621 -42741621 - L2 LINE L2 -3 3269 3214 1915 131 4 0 chr6 139674415 139674690 -42740552 + AluSx SINE Alu 1 276 -36 569 210 167 6 chr6 139674810 139674972 -42740270 - MER20 DNA MER1_type 0 219 32 209 269 26 13 chr6 139675547 139675625 -42739617 + MIR SINE MIR 179 257 -5 24 0 0 0 chr6 139675731 139675755 -42739487 + AT_rich Low_complexity Low_complexity 1 24 0 190 300 20 70 chr6 139678215 139678315 -42736927 - L2 LINE L2 -7 3265 3171 396 0 0 0 chr6 139678970 139679014 -42736228 + (CA)n Simple_repeat Simple_repeat 2 45 0 209 214 0 24 chr6 139679105 139679147 -42736095 - MER5A DNA MER1_type -106 83 43 1078 120 0 13 chr6 139679163 139679321 -42735921 + AluSg/x SINE Alu 142 297 -13 368 266 197 20 chr6 139679929 139680503 -42734739 - L1ME3A LINE L1 -230 5940 5259 332 313 39 34 chr6 139680601 139680780 -42734462 - MLT1J LTR MaLR -91 420 241 445 276 129 58 chr6 139680954 139681302 -42733940 - L1ME3A LINE L1 -896 5250 4878 427 301 69 10 chr6 139681449 139681738 -42733504 - L1ME3A LINE L1 -1428 4718 4413 501 307 128 28 chr6 139681798 139682156 -42733086 - L1ME3A LINE L1 -1877 4269 3876 319 329 79 7 chr6 139682258 139682410 -42732832 - L1ME3A LINE L1 -2399 3747 3585 1810 161 0 33 chr6 139683286 139683590 -42731652 - AluJo SINE Alu -18 294 1 1246 107 0 0 chr6 139683999 139684167 -42731075 + AluSq SINE Alu 129 296 -17 472 191 370 0 chr6 139684208 139684370 -42730872 - MIR SINE MIR -36 226 5 2633 99 32 2 chr6 139684373 139684790 -42730452 - MER1A DNA MER1_type 0 529 59 453 268 101 7 chr6 139685010 139685148 -42730094 + MIR SINE MIR 46 196 -66 21 0 0 0 chr6 139685295 139685316 -42729926 + AT_rich Low_complexity Low_complexity 1 21 0 372 278 111 9 chr6 139685417 139685525 -42729717 + L2 LINE L2 3191 3309 -4 2420 85 0 7 chr6 139685895 139686200 -42729042 + AluSg SINE Alu 1 303 -7 186 43 0 0 chr6 139686200 139686223 -42729019 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 354 108 0 0 chr6 139686222 139686287 -42728955 + (TA)n Simple_repeat Simple_repeat 1 65 0 262 323 99 63 chr6 139686419 139686781 -42728461 - L2 LINE L2 -1 3271 2897 236 335 168 11 chr6 139687599 139687790 -42727452 + MIR SINE MIR 3 223 -39 937 93 14 0 chr6 139690155 139690295 -42724947 + L1MA2 LINE L1 6163 6304 0 25 0 0 0 chr6 139690296 139690321 -42724921 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr6 139691884 139691907 -42723335 + (A)n Simple_repeat Simple_repeat 1 23 0 207 100 0 0 chr6 139692380 139692410 -42722832 + (T)n Simple_repeat Simple_repeat 1 30 0 1655 152 0 58 chr6 139693284 139693594 -42721648 + AluJb SINE Alu 1 292 -20 288 114 0 0 chr6 139695357 139695401 -42719841 + Alu SINE Alu 1 44 -258 1935 108 0 0 chr6 139695416 139695666 -42719576 - AluSg SINE Alu -60 250 1 309 194 10 31 chr6 139695682 139695780 -42719462 + GA-rich Low_complexity Low_complexity 3 98 0 3430 162 32 11 chr6 139695784 139696445 -42718797 + L1MB4 LINE L1 5491 6165 -15 468 190 0 3 chr6 139696818 139697044 -42718198 + AluJb SINE Alu 1 302 -10 294 294 22 43 chr6 139697053 139697145 -42718097 - MIR SINE MIR -102 106 17 306 269 250 6 chr6 139698144 139698304 -42716938 + MIR SINE MIR 22 220 -42 296 262 48 101 chr6 139698491 139698659 -42716583 + MIR3 SINE MIR 41 199 -9 188 339 31 0 chr6 139698830 139698895 -42716347 - L2 LINE L2 -532 2782 2716 251 308 199 7 chr6 139699038 139699184 -42716058 + MIR3 SINE MIR 28 201 -7 * 366 228 76 11 chr6 139699177 139699269 -42715973 - MER5B DNA MER1_type -80 98 1 227 395 128 5 chr6 139699714 139699909 -42715333 - L2 LINE L2 -50 3222 3004 1963 155 3 3 chr6 139700078 139700381 -42714861 - AluSx SINE Alu -9 303 1 434 225 50 67 chr6 139702176 139702543 -42712699 + L1MC4 LINE L1 6843 7176 -785 582 149 54 88 chr6 139702544 139702648 -42712594 + L1MB2 LINE L1 6022 6121 -50 2101 119 0 3 chr6 139702648 139702942 -42712300 + AluSx SINE Alu 1 293 -19 582 149 54 88 chr6 139702942 139702985 -42712257 + L1MB2 LINE L1 6121 6164 -7 566 303 59 16 chr6 139703003 139703323 -42711919 + L1MC4 LINE L1 7165 7498 -544 293 294 56 55 chr6 139703307 139703784 -42711458 + L1MC4 LINE L1 7314 7906 -136 * 243 159 0 0 chr6 139703798 139703842 -42711400 + L1MC5 LINE L1 7185 7228 -733 889 212 95 103 chr6 139704043 139704643 -42710599 + L1MC5 LINE L1 7306 7900 -61 2069 136 0 7 chr6 139705509 139705826 -42709416 + AluSx SINE Alu 1 315 0 1283 219 81 38 chr6 139705876 139706505 -42708737 + L1MC5 LINE L1 7261 7916 -45 1995 154 0 13 chr6 139706512 139706818 -42708424 - AluJb SINE Alu -10 302 1 22 0 0 0 chr6 139706911 139706933 -42708309 + AT_rich Low_complexity Low_complexity 1 22 0 352 332 91 9 chr6 139707050 139707270 -42707972 - L3 LINE CR1 -4 1573 1336 380 236 62 99 chr6 139707294 139707536 -42707706 - MER112 DNA MER1_type -11 249 17 196 158 26 0 chr6 139707695 139707733 -42707509 - L2 LINE L2 -5 3308 3270 38 61 0 0 chr6 139707801 139707867 -42707375 + AT_rich Low_complexity Low_complexity 1 66 0 364 327 78 32 chr6 139708146 139708363 -42706879 - L3 LINE CR1 -771 806 580 202 267 22 0 chr6 139708374 139708419 -42706823 - L3 LINE CR1 -1099 478 433 1344 168 126 35 chr6 139708427 139708713 -42706529 - AluJo SINE Alu 0 312 1 830 257 24 9 chr6 139709467 139709677 -42705565 + MIR SINE MIR 1 213 -49 924 199 0 28 chr6 139709687 139709863 -42705379 + FAM SINE Alu 1 40 -9 200 225 0 50 chr6 139709863 139709903 -42705339 + L2 LINE L2 3252 3289 -24 * 257 216 0 0 chr6 139709870 139709921 -42705321 + MIR SINE MIR 212 262 0 22 88 0 0 chr6 139709954 139710011 -42705231 + AT_rich Low_complexity Low_complexity 1 57 0 240 260 0 0 chr6 139710298 139710348 -42704894 + GA-rich Low_complexity Low_complexity 3 52 0 2301 104 3 3 chr6 139710352 139710661 -42704581 + AluSg1 SINE Alu 1 309 0 657 180 30 60 chr6 139711063 139711263 -42703979 + L1MC5 LINE L1 7732 7925 -36 203 348 59 25 chr6 139712384 139712502 -42702740 + MIR3 SINE MIR 1 122 -86 2329 92 0 0 chr6 139712549 139712841 -42702401 + AluSx SINE Alu 1 292 -20 897 147 0 15 chr6 139713250 139713386 -42701856 - AluSq/x SINE Alu -178 134 1 450 238 29 122 chr6 139713862 139713958 -42701284 + HAL1 LINE L1 38 141 -2366 189 0 0 0 chr6 139713958 139713979 -42701263 + (CA)n Simple_repeat Simple_repeat 2 22 0 450 238 29 122 chr6 139713979 139714193 -42701049 + HAL1 LINE L1 141 319 -2188 535 244 55 133 chr6 139714225 139714425 -42700817 + HAL1 LINE L1 1545 1759 -748 2307 118 0 0 chr6 139714425 139714729 -42700513 - AluSx SINE Alu -8 304 1 535 244 55 133 chr6 139714729 139715146 -42700096 + HAL1 LINE L1 1759 2114 -393 346 105 0 246 chr6 139715279 139715393 -42699849 + L1M3e LINE L1 1 86 -6944 2210 90 14 3 chr6 139715397 139715687 -42699555 - AluSq SINE Alu -19 294 2 3140 110 18 24 chr6 139715816 139716318 -42698924 - LTR3b LTR ERVK 0 500 2 490 88 0 0 chr6 139716333 139716401 -42698841 - HERVK14 LTR ERVK -61 5884 5817 1255 240 10 3 chr6 139716418 139716714 -42698528 - HERVK14 LTR ERVK -1758 5485 5188 317 243 0 39 chr6 139716715 139716818 -42698424 - HERVK3 LTR ERVK -7090 153 55 3379 103 16 4 chr6 139717111 139717605 -42697637 - LTR3b LTR ERVK 0 500 1 273 234 19 75 chr6 139717605 139717712 -42697530 + HAL1 LINE L1 2380 2480 -27 362 294 91 32 chr6 139718116 139718324 -42696918 + MIR SINE MIR 23 241 -21 270 236 90 0 chr6 139718523 139718612 -42696630 - Charlie8 DNA MER1_type -2231 186 90 528 218 109 7 chr6 139719153 139719300 -42695942 - MIR SINE MIR -34 228 67 291 304 149 6 chr6 139720118 139720286 -42694956 + L3b LINE CR1 1145 1336 -247 2246 124 0 0 chr6 139721226 139721524 -42693718 + AluSx SINE Alu 1 298 -14 2452 67 0 0 chr6 139721607 139721906 -42693336 - AluY SINE Alu -12 299 1 549 62 0 0 chr6 139722617 139722682 -42692560 - AluSg/x SINE Alu -141 169 105 25 31 0 0 chr6 139724675 139724707 -42690535 + AT_rich Low_complexity Low_complexity 1 32 0 30 87 0 24 chr6 139725773 139725899 -42689343 + GC_rich Low_complexity Low_complexity 1 123 0 251 242 125 39 chr6 139726705 139726833 -42688409 - MIR SINE MIR -56 206 68 391 200 126 0 chr6 139726838 139726933 -42688309 - MIR SINE MIR 0 262 156 402 273 97 0 chr6 139727059 139727213 -42688029 + MER69A DNA AcHobo 6 174 -3 252 322 174 30 chr6 139727257 139727527 -42687715 + L3 LINE CR1 985 1293 -284 368 196 78 16 chr6 139728414 139728591 -42686651 - MLT1F LTR MaLR -42 513 248 315 130 0 0 chr6 139728601 139728655 -42686587 + (TC)n Simple_repeat Simple_repeat 2 55 0 664 262 81 18 chr6 139728686 139728943 -42686299 - MLT1H LTR MaLR -249 300 22 315 0 0 0 chr6 139729176 139729211 -42686031 + (CA)n Simple_repeat Simple_repeat 1 35 0 1162 108 17 0 chr6 139729404 139729580 -42685662 + AluSg/x SINE Alu 132 310 0 325 284 78 17 chr6 139730504 139730620 -42684622 + L2 LINE L2 3149 3271 -1 330 301 51 51 chr6 139730644 139730840 -42684402 + L1MEd LINE L1 5 200 -5919 216 391 156 8 chr6 139730848 139730976 -42684266 + MER91A DNA MER1_type 8 154 -42 1447 119 0 0 chr6 139730987 139731181 -42684061 + AluSx SINE Alu 1 194 -118 263 314 40 8 chr6 139731222 139731346 -42683896 + L1MEd LINE L1 2610 2737 -3392 1411 187 23 55 chr6 139731358 139731668 -42683574 - AluJo SINE Alu -12 300 1 469 261 98 50 chr6 139731825 139732479 -42682763 + L1MEd LINE L1 2857 3541 -2588 1432 249 21 39 chr6 139732774 139733185 -42682057 + MLT1J2 LTR MaLR 14 418 -32 212 0 36 0 chr6 139733185 139733213 -42682029 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1432 249 21 39 chr6 139733213 139733235 -42682007 + MLT1J2 LTR MaLR 418 439 -11 803 102 86 0 chr6 139734481 139734609 -42680633 + MER85 DNA T2_type 1 139 0 391 318 90 34 chr6 139734751 139734984 -42680258 - L1MC/D LINE L1 -1989 5819 5574 366 273 33 33 chr6 139735896 139736121 -42679121 - L1MC/D LINE L1 -1671 4475 4248 2049 143 21 29 chr6 139736121 139736499 -42678743 + THE1C LTR MaLR 1 375 0 366 273 33 33 chr6 139736499 139736515 -42678727 - L1MC/D LINE L1 -1897 4249 4234 707 181 9 0 chr6 139736551 139736667 -42678575 + FLAM_C SINE Alu 1 117 -16 1620 77 0 5 chr6 139736676 139736896 -42678346 - L1PA8 LINE L1 0 6172 5954 21 0 0 0 chr6 139736911 139736932 -42678310 + AT_rich Low_complexity Low_complexity 1 21 0 1474 216 126 28 chr6 139736932 139737354 -42677888 + MLT1F LTR MaLR 15 484 -58 2164 100 23 13 chr6 139737354 139737653 -42677589 + AluSp SINE Alu 1 302 -11 1474 216 126 28 chr6 139737653 139737714 -42677528 + MLT1F LTR MaLR 484 538 -4 1495 250 107 64 chr6 139737729 139738163 -42677079 - L1MC/D LINE L1 -1925 4221 3807 1851 158 20 7 chr6 139738163 139738466 -42676776 + AluJb SINE Alu 1 307 -5 1495 250 107 64 chr6 139738466 139738927 -42676315 - L1MC/D LINE L1 -2339 3807 3287 1245 179 13 5 chr6 139738948 139739172 -42676070 - AluJo SINE Alu -2 310 85 274 224 100 70 chr6 139739178 139739272 -42675970 - L1MC/D LINE L1 -2880 3266 3176 1654 195 3 10 chr6 139739272 139739564 -42675678 - AluJo SINE Alu -22 290 1 2195 87 18 0 chr6 139739571 139739877 -42675365 - AluSp SINE Alu 0 311 1 274 224 100 70 chr6 139739877 139740032 -42675210 - L1MC/D LINE L1 -2975 3171 3000 1873 247 63 71 chr6 139740117 139740814 -42674428 + L1ME3A LINE L1 4721 5422 -748 1836 109 4 0 chr6 139740814 139741080 -42674162 + L1PB1 LINE L1 5882 6148 -3 1873 247 63 71 chr6 139741080 139741836 -42673406 + L1ME3A LINE L1 5422 6153 -17 1455 83 0 0 chr6 139741836 139742016 -42673226 + AluSg/x SINE Alu 128 307 -5 2404 80 6 10 chr6 139742037 139742350 -42672892 + AluSp SINE Alu 1 312 -1 1660 179 9 28 chr6 139742683 139743001 -42672241 - AluJb SINE Alu 0 312 1 1707 175 3 52 chr6 139743369 139743695 -42671547 + AluJo SINE Alu 1 310 -2 2291 107 7 0 chr6 139744548 139744857 -42670385 + AluSq SINE Alu 1 311 -2 2231 116 0 0 chr6 139745527 139745820 -42669422 - AluSx SINE Alu -19 293 1 302 330 199 11 chr6 139745992 139746183 -42669059 + MIR SINE MIR 26 252 -10 767 159 0 0 chr6 139747360 139747514 -42667728 - FLAM_A SINE Alu 0 155 2 6955 161 34 3 chr6 139747608 139748825 -42666417 + L1PA13 LINE L1 1121 2387 -4410 * 41687 69 4 2 chr6 139748819 139754953 -42660289 + L1PA5 LINE L1 1 6151 -3 319 250 67 17 chr6 139754954 139755074 -42660168 + L1MC5 LINE L1 7786 7911 -50 17508 158 46 17 chr6 139755180 139755315 -42659927 + L1PA13 LINE L1 2347 2477 -4337 2219 129 3 0 chr6 139755315 139755626 -42659616 + AluSx SINE Alu 1 312 0 17508 158 46 17 chr6 139755626 139756245 -42658997 + L1PA13 LINE L1 2477 3077 -3737 417 39 0 0 chr6 139756245 139756296 -42658946 + (TA)n Simple_repeat Simple_repeat 1 51 0 17508 158 46 17 chr6 139756296 139756873 -42658369 + L1PA13 LINE L1 3077 3636 -3178 1973 167 3 0 chr6 139756873 139757184 -42658058 + AluSx SINE Alu 1 312 0 17508 158 46 17 chr6 139757184 139760187 -42655055 + L1PA13 LINE L1 3636 6803 -11 435 327 13 19 chr6 139760214 139760370 -42654872 + MIR SINE MIR 12 166 -96 1345 273 56 38 chr6 139760406 139760944 -42654298 + L2 LINE L2 2456 3017 -296 2356 112 0 0 chr6 139760944 139761256 -42653986 - AluSx SINE Alu 0 312 1 1345 273 56 38 chr6 139761256 139761441 -42653801 + L2 LINE L2 3017 3197 -116 6865 75 4 0 chr6 139761621 139763241 -42652001 - L1PA8A LINE L1 -1 6130 4495 462 36 0 0 chr6 139763450 139763506 -42651736 + (CA)n Simple_repeat Simple_repeat 1 56 0 2443 84 0 0 chr6 139764076 139764386 -42650856 + AluY SINE Alu 1 310 -1 2479 146 23 71 chr6 139765132 139765651 -42649591 - L1MB4 LINE L1 -2 6178 5685 394 278 118 14 chr6 139765871 139766015 -42649227 + MER5B DNA MER1_type 20 178 0 1341 246 42 53 chr6 139766366 139766744 -42648498 + MLT1A2 LTR MaLR 1 374 0 252 0 0 0 chr6 139766810 139766838 -42648404 + (TG)n Simple_repeat Simple_repeat 1 28 0 1703 184 4 0 chr6 139766838 139767116 -42648126 - AluJo SINE Alu -33 279 1 2489 258 49 25 chr6 139767123 139767794 -42647448 + MER21B LTR ERV1 126 812 -51 1189 183 21 136 chr6 139768102 139768440 -42646802 + AluYb8 SINE Alu 1 299 -9 22 0 0 0 chr6 139768442 139768464 -42646778 + AT_rich Low_complexity Low_complexity 1 22 0 1407 210 30 4 chr6 139769169 139769474 -42645768 + MER58B DNA MER1_type 30 341 0 208 350 140 0 chr6 139769914 139770014 -42645228 - L3b LINE CR1 -6 1577 1464 2164 109 0 3 chr6 139770027 139770344 -42644898 + AluSx SINE Alu 1 316 0 1711 165 0 0 chr6 139770425 139770691 -42644551 + AluJb SINE Alu 1 266 -46 2768 104 6 3 chr6 139770693 139771047 -42644195 - THE1A LTR MaLR 0 355 1 681 13 0 0 chr6 139771065 139771143 -42644099 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 681 146 20 119 chr6 139771405 139771690 -42643552 - MLT1A1 LTR MaLR -4 361 4 1977 123 81 34 chr6 139771704 139772062 -42643180 + THE1C LTR MaLR 1 375 0 676 229 102 6 chr6 139772962 139773128 -42642114 - MER58A DNA MER1_type -40 184 3 764 303 21 44 chr6 139773199 139773539 -42641703 + ERVL LTR ERVL 2661 2992 -2772 778 217 0 43 chr6 139773834 139773995 -42641247 - FRAM SINE Alu -12 154 1 23 0 0 0 chr6 139774327 139774350 -42640892 + AT_rich Low_complexity Low_complexity 1 23 0 449 128 13 0 chr6 139774660 139774738 -42640504 + MER63 DNA MER1_type 836 914 -148 1311 161 48 12 chr6 139774740 139774989 -42640253 - L1MB7 LINE L1 0 6184 5927 273 182 0 18 chr6 139774990 139775045 -42640197 - L1MB7 LINE L1 -658 5520 5467 1316 155 23 27 chr6 139775045 139775264 -42639978 - AluSx SINE Alu -90 222 5 349 189 63 21 chr6 139775265 139775360 -42639882 - L1MB7 LINE L1 -810 5336 5238 1503 103 0 53 chr6 139775362 139775385 -42639857 - HSMAR2 DNA Mariner -2 1300 1277 2396 74 14 0 chr6 139775385 139775682 -42639560 + AluY SINE Alu 1 301 -10 1503 103 0 53 chr6 139775682 139775901 -42639341 - HSMAR2 DNA Mariner -25 1277 1071 541 169 0 199 chr6 139775903 139776069 -42639173 - FLAM_A SINE Alu 0 133 1 2210 93 3 20 chr6 139776072 139776372 -42638870 - AluSx SINE Alu -8 304 10 2204 97 3 29 chr6 139776458 139776767 -42638475 + AluSx SINE Alu 3 303 -9 650 227 8 0 chr6 139776770 139776889 -42638353 - AluJo/FLAM SINE Alu -188 124 5 3457 130 4 2 chr6 139776889 139777411 -42637831 - HSMAR2 DNA Mariner -777 525 3 713 183 9 107 chr6 139777412 139777531 -42637711 - L1MB7 LINE L1 -907 5239 5151 2303 103 0 0 chr6 139777531 139777821 -42637421 - AluSp SINE Alu -23 290 1 713 183 9 107 chr6 139777821 139777925 -42637317 - L1MB7 LINE L1 -995 5151 5038 810 180 19 19 chr6 139777925 139778086 -42637156 + MER63 DNA MER1_type 902 1062 0 1421 281 70 58 chr6 139779020 139779229 -42636013 + L1MEd LINE L1 320 525 -5723 841 172 107 0 chr6 139779229 139779398 -42635844 + MER53 DNA DNA 3 189 0 1421 281 70 58 chr6 139779398 139779944 -42635298 + L1MEd LINE L1 525 1122 -5126 1906 150 24 24 chr6 139779944 139780198 -42635044 - MER44D DNA MER2_type -1882 609 356 2113 147 0 0 chr6 139780198 139780498 -42634744 - AluSx SINE Alu -12 300 1 1906 150 24 24 chr6 139780498 139780582 -42634660 - MER44D DNA MER2_type -2134 357 1 1421 281 70 58 chr6 139780582 139780851 -42634391 + L1MEd LINE L1 1122 1386 -4862 2176 131 3 3 chr6 139781339 139781651 -42633591 + AluSx SINE Alu 1 312 0 224 54 54 0 chr6 139782559 139782596 -42632646 + A-rich Low_complexity Low_complexity 2 40 0 2334 97 3 0 chr6 139782880 139783179 -42632063 - AluSc SINE Alu -9 300 1 30 27 0 0 chr6 139783775 139783812 -42631430 + AT_rich Low_complexity Low_complexity 1 37 0 1864 172 3 3 chr6 139783963 139784265 -42630977 - AluJb SINE Alu -7 305 4 224 371 0 0 chr6 139785532 139785637 -42629605 + L2 LINE L2 2136 2240 -1074 1899 151 34 3 chr6 139785856 139786148 -42629094 - AluSx SINE Alu -11 301 1 249 367 75 45 chr6 139786618 139787087 -42628155 + L2 LINE L2 2473 2955 -359 504 138 25 0 chr6 139787154 139787234 -42628008 + MER81 DNA DNA 32 113 -1 875 132 0 7 chr6 139787430 139787582 -42627660 + (TTCC)n Simple_repeat Simple_repeat 3 153 0 180 87 0 0 chr6 139789110 139789133 -42626109 - L2 LINE L2 -88 3225 3203 2002 124 43 7 chr6 139789530 139789829 -42625413 - AluSx SINE Alu -2 310 1 573 294 72 59 chr6 139790029 139790192 -42625050 + L1ME4a LINE L1 5107 5266 -855 3281 123 27 2 chr6 139790192 139790673 -42624569 + L1PA15 LINE L1 5665 6157 -8 573 294 72 59 chr6 139790673 139791034 -42624208 + L1ME4a LINE L1 5266 5621 -500 2193 124 3 9 chr6 139791034 139791349 -42623893 + AluSq SINE Alu 1 313 0 573 294 72 59 chr6 139791349 139791499 -42623743 + L1ME4a LINE L1 5621 5768 -353 2250 105 7 0 chr6 139791499 139791794 -42623448 + AluSx SINE Alu 1 297 -15 573 294 72 59 chr6 139791794 139791924 -42623318 + L1ME4a LINE L1 5768 5934 -187 23 0 0 0 chr6 139792081 139792104 -42623138 + AT_rich Low_complexity Low_complexity 1 23 0 1803 130 55 27 chr6 139792798 139793090 -42622152 - AluSp SINE Alu -13 300 1 26 50 0 0 chr6 139793419 139793459 -42621783 + AT_rich Low_complexity Low_complexity 1 40 0 718 237 85 0 chr6 139793521 139793698 -42621544 - LTR47A LTR ERVL 0 452 261 195 129 0 0 chr6 139793948 139793979 -42621263 + (T)n Simple_repeat Simple_repeat 1 31 0 182 315 67 91 chr6 139794119 139794284 -42620958 - L2 LINE L2 -86 3186 3026 2356 70 0 3 chr6 139794525 139794823 -42620419 + AluY SINE Alu 1 297 -14 446 238 15 10 chr6 139795107 139795278 -42619964 - L1MC4 LINE L1 -479 7563 7289 * 894 248 105 80 chr6 139795247 139795986 -42619256 - L1MC4 LINE L1 -552 7490 6727 686 272 112 49 chr6 139796140 139796462 -42618780 - MER34 LTR ERV1 -3 539 172 1932 164 0 0 chr6 139796462 139796766 -42618476 - AluJb SINE Alu -8 304 1 686 272 112 49 chr6 139796766 139796950 -42618292 - MER34 LTR ERV1 -370 172 1 424 284 139 65 chr6 139797874 139798319 -42616923 + L1M2 LINE L1 777 1339 -5510 186 313 70 26 chr6 139799204 139799319 -42615923 - MIR SINE MIR -64 198 79 294 106 0 0 chr6 139799423 139799470 -42615772 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1300 173 62 26 chr6 139799473 139799745 -42615497 - AluJo SINE Alu -30 282 1 2270 101 0 3 chr6 139799868 139800176 -42615066 - AluY SINE Alu -4 307 1 1925 107 34 34 chr6 139800549 139800905 -42614337 - L1MA3 LINE L1 -234 6071 5716 313 301 196 34 chr6 139800905 139801114 -42614128 - L1ME LINE L1 -354 5767 5525 546 273 126 1 chr6 139801119 139801354 -42613888 + MIR SINE MIR 2 262 0 354 299 0 0 chr6 139802165 139802252 -42612990 - L2 LINE L2 0 3272 3186 304 118 78 0 chr6 139802315 139802366 -42612876 - MER94 DNA DNA -79 55 1 560 190 22 117 chr6 139802626 139802805 -42612437 - MER5B DNA MER1_type 0 178 17 1928 168 85 3 chr6 139803616 139804004 -42611238 + MSTB LTR MaLR 1 420 -6 8735 155 25 57 chr6 139804010 139805716 -42609526 + MSTB-int LTR MaLR 1 1651 0 2063 178 73 5 chr6 139805716 139806115 -42609127 + MSTB LTR MaLR 1 426 0 22 0 0 0 chr6 139806233 139806255 -42608987 + AT_rich Low_complexity Low_complexity 1 22 0 5097 39 0 0 chr6 139806255 139806824 -42608418 - SVA Other Other 0 1386 818 21 57 0 0 chr6 139807956 139807991 -42607251 + AT_rich Low_complexity Low_complexity 1 35 0 1531 177 17 35 chr6 139808055 139808343 -42606899 - AluJb SINE Alu -24 288 6 24 53 0 0 chr6 139808388 139808426 -42606816 + AT_rich Low_complexity Low_complexity 1 38 0 418 348 0 22 chr6 139808552 139808687 -42606555 - L2 LINE L2 -3 3269 3138 754 151 0 8 chr6 139808820 139808939 -42606303 + FLAM_C SINE Alu 1 118 -15 25 0 0 0 chr6 139808945 139808970 -42606272 + AT_rich Low_complexity Low_complexity 1 25 0 267 323 138 0 chr6 139809209 139809339 -42605903 - MIR3 SINE MIR -43 165 18 265 292 53 121 chr6 139809352 139809613 -42605629 - L2 LINE L2 -41 3231 2989 222 355 84 24 chr6 139809613 139809779 -42605463 - MER5A DNA MER1_type 0 189 14 2173 125 0 0 chr6 139811847 139812151 -42603091 + AluSx SINE Alu 1 304 -8 735 205 0 0 chr6 139812489 139812611 -42602631 - FLAM_A SINE Alu -10 123 2 280 217 33 0 chr6 139813153 139813213 -42602029 - L2 LINE L2 -4 3309 3248 355 264 11 0 chr6 139813284 139813371 -42601871 + MIR SINE MIR 140 227 -35 23 0 0 0 chr6 139813458 139813481 -42601761 + AT_rich Low_complexity Low_complexity 1 23 0 2157 131 3 0 chr6 139813538 139813835 -42601407 - AluSx SINE Alu -13 299 2 2218 107 3 3 chr6 139813956 139814247 -42600995 + AluSq SINE Alu 1 291 -22 2250 113 3 0 chr6 139815038 139815339 -42599903 + AluSx SINE Alu 1 302 -10 2429 61 0 7 chr6 139815341 139815637 -42599605 + AluY SINE Alu 3 296 -15 481 273 16 70 chr6 139816259 139816420 -42598822 + MER112 DNA MER1_type 32 177 -83 2191 106 10 3 chr6 139816420 139816713 -42598529 + AluSq SINE Alu 1 295 -18 481 273 16 70 chr6 139816713 139816793 -42598449 + MER112 DNA MER1_type 177 260 0 198 0 0 0 chr6 139816961 139816983 -42598259 + (T)n Simple_repeat Simple_repeat 1 22 0 903 197 107 153 chr6 139817051 139817512 -42597730 - L1MC5 LINE L1 -165 7796 7315 1711 201 27 0 chr6 139817512 139817806 -42597436 - AluJo SINE Alu -10 302 1 903 197 107 153 chr6 139817806 139818450 -42596792 - L1MC5 LINE L1 -646 7315 6742 22 56 0 0 chr6 139818804 139818840 -42596402 + AT_rich Low_complexity Low_complexity 1 36 0 1984 149 3 10 chr6 139818852 139819160 -42596082 + AluJo SINE Alu 5 310 -2 2414 67 0 22 chr6 139819253 139819567 -42595675 - AluY SINE Alu -4 307 1 869 221 44 35 chr6 139819646 139819872 -42595370 - MIR SINE MIR -1 261 34 22 0 0 0 chr6 139820252 139820274 -42594968 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr6 139820993 139821017 -42594225 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1715 166 11 0 chr6 139821020 139821298 -42593944 - AluSx SINE Alu -30 282 2 2267 71 0 0 chr6 139821571 139821885 -42593357 - AluY SINE Alu 0 314 1 615 214 241 9 chr6 139821906 139822126 -42593116 - MER5C DNA MER1_type -50 274 4 699 241 131 5 chr6 139822232 139822431 -42592811 + MER58A DNA MER1_type 1 224 0 822 145 0 0 chr6 139822878 139822995 -42592247 - FRAM SINE Alu -19 157 41 2177 144 0 0 chr6 139823855 139824167 -42591075 + AluJb SINE Alu 1 312 0 225 313 0 0 chr6 139824373 139824440 -42590802 - MIR SINE MIR -76 132 66 305 335 38 14 chr6 139824869 139825024 -42590218 + MIR SINE MIR 20 176 -56 183 100 0 0 chr6 139825484 139825514 -42589728 + (TC)n Simple_repeat Simple_repeat 2 31 0 621 189 30 30 chr6 139826333 139826497 -42588745 - MER31B LTR ERV1 -302 164 1 236 236 162 29 chr6 139828006 139828154 -42587088 + MIR SINE MIR 56 258 -4 277 91 0 91 chr6 139828874 139828929 -42586313 - MLT2D LTR ERVL -7 513 464 856 175 115 5 chr6 139828966 139829166 -42586076 - MLT2D LTR ERVL -50 364 143 1666 172 24 10 chr6 139830622 139830918 -42584324 + AluJo SINE Alu 1 300 -12 246 136 0 0 chr6 139830918 139830962 -42584280 + (GA)n Simple_repeat Simple_repeat 1 44 0 190 367 67 0 chr6 139831921 139831981 -42583261 + L2 LINE L2 3209 3272 0 297 68 0 0 chr6 139832308 139832352 -42582890 + (CATGT)n Simple_repeat Simple_repeat 5 48 0 285 275 8 42 chr6 139832424 139832544 -42582698 + CT-rich Low_complexity Low_complexity 3 118 0 1963 13 4 0 chr6 139832573 139832802 -42582440 + L1PA3 LINE L1 5926 6155 0 307 344 93 81 chr6 139833600 139833934 -42581308 - L2 LINE L2 0 3272 2935 1632 167 82 4 chr6 139834839 139835120 -42580122 - AluJo SINE Alu -9 303 1 2234 89 13 32 chr6 139835407 139835723 -42579519 + AluSg SINE Alu 1 310 0 879 218 0 0 chr6 139836939 139837095 -42578147 + FRAM SINE Alu 1 156 -20 2241 153 36 22 chr6 139837366 139837811 -42577431 - Tigger2 DNA MER2_type -1 2717 2267 371 155 0 0 chr6 139837798 139837856 -42577386 + MER8 DNA MER2_type 174 231 -8 * 964 228 45 56 chr6 139838108 139838590 -42576652 + MER39 LTR ERV1 26 565 0 840 218 109 54 chr6 139839604 139839698 -42575544 - MIR SINE MIR -10 252 165 1676 183 70 68 chr6 139839698 139840152 -42575090 - MSTB2 LTR MaLR 0 457 3 840 218 109 54 chr6 139840152 139840296 -42574946 - MIR SINE MIR -97 165 1 321 349 133 27 chr6 139840322 139840623 -42574619 + L2 LINE L2 311 643 -2671 641 307 87 9 chr6 139840686 139840904 -42574338 + MIR SINE MIR 28 262 0 480 339 47 52 chr6 139841305 139841661 -42573581 + L2 LINE L2 2765 3119 -153 2258 115 0 0 chr6 139841661 139841966 -42573276 - AluSx SINE Alu -7 305 1 480 339 47 52 chr6 139841966 139842093 -42573149 + L2 LINE L2 3119 3245 -27 1386 218 19 8 chr6 139842095 139842406 -42572836 + AluJb SINE Alu 14 327 0 201 317 154 70 chr6 139843075 139843406 -42571836 + L2 LINE L2 1762 2120 -1194 2142 86 57 0 chr6 139843448 139843728 -42571514 - AluSx SINE Alu -16 296 1 184 399 99 21 chr6 139843846 139844282 -42570960 + L2 LINE L2 2503 2972 -342 23 0 0 0 chr6 139844317 139844340 -42570902 + AT_rich Low_complexity Low_complexity 1 23 0 1853 147 0 7 chr6 139844356 139844628 -42570614 + AluSx SINE Alu 23 292 -20 3610 161 44 4 chr6 139844631 139845308 -42569934 - L1MB2 LINE L1 -2 6169 5466 2117 187 35 10 chr6 139848002 139848568 -42566674 - L1MB2 LINE L1 -710 5473 4895 2111 135 107 18 chr6 139848568 139848961 -42566281 + MSTA LTR MaLR 1 428 0 2117 187 35 10 chr6 139848961 139849013 -42566229 - L1MB2 LINE L1 -1288 4895 4846 1447 151 15 141 chr6 139849018 139849416 -42565826 - MLT1A1 LTR MaLR -17 348 1 1706 199 9 63 chr6 139849416 139849943 -42565299 - L1MB2 LINE L1 -1298 4848 4350 182 240 20 0 chr6 139850149 139850199 -42565043 + L2 LINE L2 3262 3312 -1 197 336 173 0 chr6 139850392 139850502 -42564740 - MIR3 SINE MIR -19 189 61 1763 166 0 46 chr6 139851020 139851345 -42563897 - AluJb SINE Alu -2 310 1 1958 201 56 15 chr6 139851409 139851802 -42563440 - MER47B DNA MER2_type -9 409 1 1871 160 3 22 chr6 139852849 139853167 -42562075 + AluSx SINE Alu 1 312 0 253 234 109 78 chr6 139853382 139853510 -42561732 + L2 LINE L2 3182 3313 0 392 208 0 0 chr6 139853686 139853758 -42561484 + MER116 DNA Mariner 9 80 0 248 289 103 72 chr6 139854073 139854336 -42560906 + LTR67 LTR ERVL 185 455 -102 1297 139 0 5 chr6 139854381 139854568 -42560674 - AluJo SINE Alu -126 186 1 14360 157 24 10 chr6 139854568 139858760 -42556482 - L1 LINE L1 -979 6586 2329 2276 105 7 0 chr6 139858760 139859056 -42556186 - AluSx SINE Alu -14 298 1 14360 157 24 10 chr6 139859056 139859165 -42556077 - L1 LINE L1 -5236 2329 2223 299 320 68 9 chr6 139859699 139859918 -42555324 - L1MC/D LINE L1 -2035 5773 5542 671 252 32 38 chr6 139859925 139860239 -42555003 - L1MEc LINE L1 -5089 1307 996 2427 81 369 9 chr6 139860244 139860691 -42554551 - LTR14B LTR ERVK 0 608 1 1630 231 27 40 chr6 139860707 139861152 -42554090 - L1MEc LINE L1 -5434 962 524 314 277 48 0 chr6 139861148 139861231 -42554011 - L1MEc LINE L1 -6117 279 193 * 640 293 46 3 chr6 139861246 139861549 -42553693 - L1MEc LINE L1 -5886 510 169 469 239 44 0 chr6 139863763 139863876 -42551366 - L2 LINE L2 -4 3309 3192 3960 31 0 0 chr6 139863923 139864411 -42550831 - L1M LINE L1 -838 5308 4828 7047 28 2 0 chr6 139864412 139865276 -42549966 + L1PA3 LINE L1 5301 6166 0 22 56 0 0 chr6 139865998 139866034 -42549208 + AT_rich Low_complexity Low_complexity 1 36 0 482 289 49 23 chr6 139866261 139866527 -42548715 - L1ME LINE L1 -326 5795 5523 376 235 74 19 chr6 139866674 139866836 -42548406 + L1ME LINE L1 5647 5817 -304 423 152 0 0 chr6 139869224 139869303 -42545939 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 220 288 15 15 chr6 139869488 139869554 -42545688 + MIR SINE MIR 81 146 -62 1660 149 6 67 chr6 139869811 139870127 -42545115 - AluJo SINE Alu -15 297 1 382 274 18 0 chr6 139871110 139871223 -42544019 + MER103 DNA DNA 4 118 -48 * 1066 238 87 28 chr6 139871212 139871535 -42543707 - MLT1I LTR MaLR -50 359 18 2426 80 0 0 chr6 139871743 139872042 -42543200 - AluY SINE Alu -12 299 1 24 0 0 0 chr6 139872149 139872173 -42543069 + AT_rich Low_complexity Low_complexity 1 24 0 2423 70 0 25 chr6 139873980 139874295 -42540947 + AluY SINE Alu 5 311 0 2211 157 8 0 chr6 139874320 139874683 -42540559 - MER47A DNA MER2_type 0 366 1 21 82 0 0 chr6 139877292 139877341 -42537901 + AT_rich Low_complexity Low_complexity 1 49 0 585 222 192 0 chr6 139877400 139877567 -42537675 + MIR SINE MIR 48 246 -16 202 302 85 9 chr6 139879404 139879510 -42535732 - L3b LINE CR1 -336 1247 1134 3714 177 34 117 chr6 139979850 139981939 -42433303 - L1ME1 LINE L1 -105 6872 4962 1627 260 166 39 chr6 139981916 139982148 -42433094 - L1ME1 LINE L1 -2440 4517 4316 * 1798 168 13 10 chr6 139982148 139982452 -42432790 + AluJb SINE Alu 1 305 -7 1627 260 166 39 chr6 139982452 139983962 -42431280 - L1ME1 LINE L1 -2641 4316 2583 192 152 0 0 chr6 139983971 139984004 -42431238 + (TA)n Simple_repeat Simple_repeat 2 34 0 370 259 72 14 chr6 139984017 139984156 -42431086 - L1ME1 LINE L1 -5421 1438 1292 286 313 93 27 chr6 139984432 139984582 -42430660 - Charlie8 DNA MER1_type -2257 160 1 1208 276 64 35 chr6 139986679 139987109 -42428133 + L1MDa LINE L1 1446 1964 -4757 1936 152 133 13 chr6 139987109 139987491 -42427751 + MSTA LTR MaLR 1 428 0 1208 276 64 35 chr6 139987491 139987772 -42427470 + L1MDa LINE L1 1964 2235 -4486 1961 152 0 7 chr6 139987830 139988132 -42427110 + AluJb SINE Alu 1 300 -12 596 217 23 70 chr6 139988134 139988261 -42426981 + L1MDa LINE L1 3475 3586 -2954 1432 149 51 78 chr6 139988261 139988557 -42426685 - AluJb SINE Alu -23 289 2 596 217 23 70 chr6 139988557 139988687 -42426555 + L1MDa LINE L1 3586 3720 -2820 269 128 43 0 chr6 139988688 139988735 -42426507 - MLT1C LTR MaLR -417 50 2 22 35 0 0 chr6 139988959 139988988 -42426254 + AT_rich Low_complexity Low_complexity 1 29 0 1311 206 63 14 chr6 139989052 139989339 -42425903 - AluJo SINE Alu -11 301 1 1024 252 91 44 chr6 139989345 139989494 -42425748 + HAL1 LINE L1 85 226 -2281 2040 115 7 0 chr6 139989494 139989773 -42425469 + AluSg SINE Alu 1 281 -29 1024 252 91 44 chr6 139989773 139990051 -42425191 + HAL1 LINE L1 226 532 -1975 258 387 35 42 chr6 139990135 139990277 -42424965 - L2 LINE L2 -25 3247 3107 507 163 0 0 chr6 139990607 139990687 -42424555 - MADE1 DNA Mariner 0 80 1 281 357 50 14 chr6 139990975 139991115 -42424127 - L2 LINE L2 -211 3061 2917 2351 88 0 3 chr6 139991698 139992003 -42423239 + AluY SINE Alu 1 304 -7 26 30 0 0 chr6 139992020 139992053 -42423189 + AT_rich Low_complexity Low_complexity 1 33 0 281 245 61 20 chr6 139992171 139992269 -42422973 - L1MC4 LINE L1 -1327 6715 6614 276 233 0 0 chr6 139992276 139992349 -42422893 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 242 174 0 0 chr6 139992351 139992397 -42422845 + L1MC4 LINE L1 6658 6703 -1339 180 200 0 0 chr6 139992397 139992437 -42422805 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 246 247 24 0 chr6 139992438 139992523 -42422719 + L1MC4 LINE L1 6615 6701 -1341 245 250 0 22 chr6 139992529 139992621 -42422621 + L1MC4 LINE L1 6614 6703 -1339 1957 114 0 0 chr6 139992626 139992880 -42422362 - AluSx SINE Alu -58 254 1 399 274 71 74 chr6 139993074 139993384 -42421858 - L2 LINE L2 0 3313 3005 402 281 98 53 chr6 139994824 139995109 -42420133 - L1ME LINE L1 -323 5798 5501 894 231 95 16 chr6 139995127 139995369 -42419873 - MIR SINE MIR 0 262 2 351 256 94 28 chr6 139995370 139995550 -42419692 - L1ME LINE L1 -2325 5483 5292 1443 209 110 29 chr6 139995802 139995871 -42419371 - MLT1G LTR MaLR 0 590 528 1628 164 119 0 chr6 139995871 139996181 -42419061 + MER7A DNA MER2_type 2 346 0 1443 209 110 29 chr6 139996181 139996633 -42418609 - MLT1G LTR MaLR -62 528 13 1091 234 10 12 chr6 139996936 139997221 -42418021 + L1MC5 LINE L1 6967 7249 -735 184 346 70 19 chr6 139997457 139997613 -42417629 + L2 LINE L2 731 894 -2420 651 163 32 8 chr6 139997705 139997828 -42417414 - FLAM_A SINE Alu -7 126 1 1774 199 20 75 chr6 139997862 139998355 -42416887 + MLT1C LTR MaLR 2 467 0 2758 88 11 11 chr6 139998555 139998930 -42416312 + THE1C LTR MaLR 1 375 0 2364 301 46 21 chr6 139998983 140000566 -42414676 - HERV16 LTR ERVL -2578 2418 732 21 0 0 0 chr6 140000576 140000597 -42414645 + AT_rich Low_complexity Low_complexity 1 21 0 381 340 26 19 chr6 140001292 140001448 -42413794 + MIR SINE MIR 7 163 -99 21 57 0 0 chr6 140002354 140002389 -42412853 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr6 140002987 140003011 -42412231 + (TTA)n Simple_repeat Simple_repeat 3 26 0 2124 144 0 0 chr6 140003549 140003861 -42411381 - AluSq SINE Alu -1 312 1 21 0 0 0 chr6 140003956 140003977 -42411265 + AT_rich Low_complexity Low_complexity 1 21 0 2019 154 0 0 chr6 140004698 140004996 -42410246 - AluSx SINE Alu -12 300 3 216 0 0 0 chr6 140005799 140005823 -42409419 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 548 139 0 0 chr6 140005914 140005993 -42409249 + AluJ/FLAM SINE Alu 5 83 -229 1813 100 11 0 chr6 140006236 140006506 -42408736 + L1PA13 LINE L1 5888 6160 -3 1117 277 91 11 chr6 140006996 140007465 -42407777 - L2 LINE L2 -13 3300 2794 2200 113 7 0 chr6 140007850 140008143 -42407099 + AluSx SINE Alu 1 295 -17 297 263 100 19 chr6 140008609 140008769 -42406473 - MIR SINE MIR -10 252 80 4487 126 20 9 chr6 140009456 140010138 -42405104 + LTR8 LTR ERV1 2 691 0 407 209 0 170 chr6 140010688 140010841 -42404401 - L2 LINE L2 0 3313 3187 1831 271 65 49 chr6 140011007 140011101 -42404141 + L2 LINE L2 2284 2375 -938 1809 144 0 85 chr6 140011101 140011442 -42403800 - AluJo SINE Alu 0 312 1 1831 271 65 49 chr6 140011442 140012360 -42402882 + L2 LINE L2 2375 3313 0 384 281 37 7 chr6 140012371 140012506 -42402736 + MIR3 SINE MIR 3 141 -67 21 0 0 0 chr6 140012659 140012680 -42402562 + AT_rich Low_complexity Low_complexity 1 21 0 2054 124 0 3 chr6 140013197 140013488 -42401754 + AluSx SINE Alu 1 290 -22 238 216 0 0 chr6 140013653 140013704 -42401538 - L2 LINE L2 0 3272 3222 228 35 0 0 chr6 140013724 140013753 -42401489 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 258 250 150 10 chr6 140013763 140013863 -42401379 + L3 LINE CR1 351 464 -1113 2026 116 42 100 chr6 140014018 140014242 -42401000 - MSTA LTR MaLR -6 422 235 2194 102 9 22 chr6 140014242 140014557 -42400685 - AluSp SINE Alu 0 313 3 2026 116 42 100 chr6 140014557 140014780 -42400462 - MSTA LTR MaLR -193 235 1 274 306 67 52 chr6 140014803 140015071 -42400171 + L3 LINE CR1 1020 1291 -286 202 206 206 0 chr6 140015084 140015147 -42400095 - MIR SINE MIR -11 251 176 2251 119 0 0 chr6 140015153 140015464 -42399778 - AluSx SINE Alu -1 311 1 478 314 15 0 chr6 140016698 140016835 -42398407 - MIR SINE MIR -14 248 110 400 291 78 39 chr6 140017810 140018246 -42396996 - L1ME4a LINE L1 -26 6095 5643 325 311 53 23 chr6 140018684 140018816 -42396426 - MIR SINE MIR -8 254 119 308 376 0 9 chr6 140019242 140019351 -42395891 - MIR SINE MIR -77 131 24 188 35 35 0 chr6 140019453 140019482 -42395760 + (CA)n Simple_repeat Simple_repeat 2 31 0 346 305 114 15 chr6 140019611 140019742 -42395500 + L2 LINE L2 3129 3272 0 2179 131 25 43 chr6 140019922 140020319 -42394923 - MLT1B LTR MaLR 0 390 1 27 0 0 0 chr6 140020484 140020511 -42394731 + AT_rich Low_complexity Low_complexity 1 27 0 2028 149 0 16 chr6 140020514 140020829 -42394413 + AluSx SINE Alu 1 310 -2 587 126 19 0 chr6 140020831 140020934 -42394308 + GA-rich Low_complexity Low_complexity 3 107 0 312 245 143 0 chr6 140021815 140021913 -42393329 + MIR SINE MIR 122 233 -29 360 0 0 0 chr6 140022871 140022911 -42392331 + (TG)n Simple_repeat Simple_repeat 1 40 0 801 172 0 6 chr6 140023216 140023373 -42391869 + L1MA9 LINE L1 6119 6274 -38 687 232 16 0 chr6 140024638 140024828 -42390414 + L1MD3 LINE L1 7784 7976 -19 283 206 0 0 chr6 140024900 140024963 -42390279 + MER116 DNA Mariner 9 71 -9 1602 152 6 82 chr6 140025130 140025458 -42389784 - AluSx SINE Alu -9 303 1 294 339 52 0 chr6 140025572 140025687 -42389555 + L2 LINE L2 2950 3070 -243 777 169 0 0 chr6 140025727 140025875 -42389367 - AluJb SINE Alu 0 306 159 2137 118 0 9 chr6 140025930 140026245 -42388997 - AluSx SINE Alu 0 312 1 637 218 15 76 chr6 140026245 140026442 -42388800 + L2 LINE L2 3129 3313 0 650 290 68 9 chr6 140027160 140027381 -42387861 - MIR SINE MIR -27 235 2 22 35 0 0 chr6 140029328 140029357 -42385885 + AT_rich Low_complexity Low_complexity 1 29 0 2109 230 129 49 chr6 140029454 140029722 -42385520 + L1MC4a LINE L1 5628 5873 -1935 1771 157 0 31 chr6 140029722 140030016 -42385226 + AluJb SINE Alu 24 308 -4 2109 230 129 49 chr6 140030016 140030644 -42384598 + L1MC4a LINE L1 5873 6596 -1212 1796 170 18 9 chr6 140030653 140030983 -42384259 - MER49 LTR ERV1 0 923 591 256 128 0 0 chr6 140030980 140031019 -42384223 + 5S rRNA rRNA 1 39 -82 * 3191 131 30 59 chr6 140031019 140031335 -42383907 - MER49 LTR ERV1 -313 610 318 2083 107 0 4 chr6 140031335 140031658 -42383584 + AluSg SINE Alu 1 322 0 3191 131 30 59 chr6 140031658 140031968 -42383274 - MER49 LTR ERV1 -605 318 1 2827 254 110 22 chr6 140032004 140033209 -42382033 + L1MC4 LINE L1 6692 8002 -40 872 151 0 8 chr6 140033209 140033335 -42381907 - AluSq/x SINE Alu -187 125 1 1196 108 0 0 chr6 140033643 140033800 -42381442 + AluSc SINE Alu 131 287 -22 964 189 50 40 chr6 140034568 140034649 -42380593 + MER58A DNA MER1_type 1 80 -2340 1773 112 60 91 chr6 140034649 140035034 -42380208 + THE1C LTR MaLR 1 373 -2 964 189 50 40 chr6 140035034 140035174 -42380068 + MER58A DNA MER1_type 80 224 0 359 314 174 3 chr6 140035176 140035469 -42379773 - L1MC4a LINE L1 -1888 5920 5578 350 272 61 85 chr6 140036631 140036746 -42378496 - L1MC/D LINE L1 -2083 5725 5609 1783 109 117 8 chr6 140036746 140037012 -42378230 - AluSx SINE Alu -17 295 1 350 272 61 85 chr6 140037012 140037142 -42378100 - L1MC/D LINE L1 -2199 5609 5486 21 0 0 0 chr6 140037564 140037585 -42377657 + AT_rich Low_complexity Low_complexity 1 21 0 187 305 34 34 chr6 140037633 140037751 -42377491 + L2 LINE L2 1932 2049 -1265 297 0 0 0 chr6 140038013 140038046 -42377196 + (TG)n Simple_repeat Simple_repeat 2 34 0 254 316 0 0 chr6 140038593 140038669 -42376573 + GA-rich Low_complexity Low_complexity 1 76 0 1783 142 33 7 chr6 140038991 140039299 -42375943 - AluSx SINE Alu 0 315 1 322 262 203 53 chr6 140039375 140039562 -42375680 - MIR SINE MIR -47 215 1 207 0 0 0 chr6 140040228 140040251 -42374991 + (TTG)n Simple_repeat Simple_repeat 2 24 0 226 333 65 37 chr6 140041526 140041634 -42373608 + L2 LINE L2 3156 3266 -6 228 35 0 0 chr6 140041786 140041815 -42373427 + (TG)n Simple_repeat Simple_repeat 2 30 0 1261 158 17 4 chr6 140041935 140042169 -42373073 + L1MA6 LINE L1 6059 6295 -5 221 221 0 29 chr6 140042842 140042910 -42372332 + (TA)n Simple_repeat Simple_repeat 1 66 0 835 137 0 15 chr6 140042929 140043060 -42372182 - FLAM_C SINE Alu -4 129 1 216 0 0 0 chr6 140043231 140043255 -42371987 + (A)n Simple_repeat Simple_repeat 1 24 0 638 282 107 0 chr6 140043631 140043837 -42371405 + MIR SINE MIR 14 241 -21 21 0 0 0 chr6 140045573 140045594 -42369648 + AT_rich Low_complexity Low_complexity 1 21 0 1395 214 58 31 chr6 140045658 140046106 -42369136 + MLT1C LTR MaLR 1 460 -7 2635 91 6 6 chr6 140046228 140046590 -42368652 + THE1B LTR MaLR 1 362 -2 471 277 138 21 chr6 140046646 140046834 -42368408 + MIR SINE MIR 4 213 -49 1365 157 4 0 chr6 140046855 140047090 -42368152 - L1MB1 LINE L1 -1 6167 5932 466 186 49 0 chr6 140047091 140047193 -42368049 + L1MB1 LINE L1 5830 5936 -232 733 174 8 15 chr6 140047242 140047374 -42367868 - FLAM_A SINE Alu -1 132 2 728 188 16 8 chr6 140047658 140047786 -42367456 - FLAM_C SINE Alu -4 129 1 2155 100 7 17 chr6 140047933 140048234 -42367008 - AluSx SINE Alu -14 298 1 210 37 0 0 chr6 140048553 140048580 -42366662 + (CAA)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr6 140048669 140048689 -42366553 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 330 102 0 0 chr6 140048698 140048747 -42366495 - U6 snRNA snRNA -58 49 1 1968 102 29 0 chr6 140049822 140050138 -42365104 + AluSg SINE Alu 1 324 0 1967 129 29 0 chr6 140050144 140050424 -42364818 + AluSx SINE Alu 1 288 -24 25 31 0 0 chr6 140050656 140050688 -42364554 + AT_rich Low_complexity Low_complexity 1 32 0 288 245 248 36 chr6 140050951 140051229 -42364013 + HAL1 LINE L1 22 358 -2149 741 260 131 26 chr6 140051240 140051628 -42363614 + HAL1 LINE L1 439 867 -1640 593 212 98 44 chr6 140051632 140051916 -42363326 + HAL1 LINE L1 921 1223 -1284 2249 114 3 0 chr6 140051916 140052215 -42363027 - AluSx SINE Alu -12 300 1 593 212 98 44 chr6 140052215 140052227 -42363015 + HAL1 LINE L1 1223 1233 -1274 * 628 257 37 0 chr6 140052224 140052411 -42362831 + HAL1 LINE L1 1555 1748 -759 239 179 0 26 chr6 140053726 140053804 -42361438 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 2286 115 3 0 chr6 140055270 140055575 -42359667 - AluSq SINE Alu -7 306 1 235 282 122 32 chr6 140055810 140055998 -42359244 - L1M4 LINE L1 -987 5159 4955 248 394 57 34 chr6 140056095 140056270 -42358972 + L2 LINE L2 3090 3268 -4 314 243 32 122 chr6 140056878 140057067 -42358175 - MIR SINE MIR -1 261 90 1644 211 17 14 chr6 140057244 140057580 -42357662 + MLT1A1 LTR MaLR 4 343 -22 433 73 0 167 chr6 140057580 140057619 -42357623 + MADE1 DNA Mariner 1 16 -64 1997 119 0 56 chr6 140057619 140057922 -42357320 - AluSx SINE Alu -26 286 1 433 73 0 167 chr6 140057922 140057978 -42357264 + MADE1 DNA Mariner 16 80 0 1644 211 17 14 chr6 140057978 140058002 -42357240 + MLT1A1 LTR MaLR 343 365 0 412 208 223 23 chr6 140058128 140058258 -42356984 - MIR SINE MIR -3 259 104 820 224 78 0 chr6 140058295 140058474 -42356768 - MIR SINE MIR -26 236 44 252 0 0 0 chr6 140058993 140059021 -42356221 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr6 140059020 140059046 -42356196 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 633 235 176 0 chr6 140059127 140059280 -42355962 - MER5A DNA MER1_type 0 189 10 237 271 94 0 chr6 140059341 140059426 -42355816 + MIR SINE MIR 86 178 -84 649 228 16 0 chr6 140060827 140060950 -42354292 + FLAM_A SINE Alu 1 125 -8 2047 140 0 10 chr6 140061964 140062264 -42352978 + AluSx SINE Alu 1 297 -15 351 0 0 0 chr6 140063427 140063466 -42351776 + (TG)n Simple_repeat Simple_repeat 2 40 0 1031 269 20 66 chr6 140063546 140063955 -42351287 + L2 LINE L2 2912 3301 -12 946 79 0 0 chr6 140063969 140064095 -42351147 + L1PA12 LINE L1 6043 6168 0 27 49 0 0 chr6 140064326 140064367 -42350875 + AT_rich Low_complexity Low_complexity 1 41 0 2026 184 3 0 chr6 140064730 140065077 -42350165 - MER7A DNA MER2_type 0 346 1 23 54 0 0 chr6 140065170 140065207 -42350035 + AT_rich Low_complexity Low_complexity 1 37 0 486 0 0 0 chr6 140065443 140065497 -42349745 + (CA)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr6 140065611 140065654 -42349588 + AT_rich Low_complexity Low_complexity 1 43 0 2135 108 0 7 chr6 140065853 140066162 -42349080 - AluSx SINE Alu 0 307 1 29 28 0 0 chr6 140066164 140066200 -42349042 + AT_rich Low_complexity Low_complexity 1 36 0 318 307 0 0 chr6 140066838 140066913 -42348329 + L1PA15-16 LINE L1 982 1056 -5793 * 4363 195 127 5 chr6 140066890 140067810 -42347432 - L1PA15-16 LINE L1 -5319 1530 499 1740 152 3 0 chr6 140068605 140068902 -42346340 + MER47A DNA MER2_type 1 298 -68 756 214 0 35 chr6 140068902 140069047 -42346195 + FAM SINE Alu 1 140 -45 387 235 0 0 chr6 140069072 140069153 -42346089 + MER47A DNA MER2_type 285 365 -1 41 48 0 0 chr6 140069320 140069382 -42345860 + AT_rich Low_complexity Low_complexity 1 62 0 226 261 11 76 chr6 140069455 140069532 -42345710 + L1ME LINE L1 491 563 -5967 2410 120 0 47 chr6 140069532 140069914 -42345328 - THE1B LTR MaLR 0 364 1 226 261 11 76 chr6 140069914 140069928 -42345314 + L1ME LINE L1 563 576 -5954 390 289 102 20 chr6 140070525 140070747 -42344495 + L1ME LINE L1 1028 1308 -5285 1209 199 93 64 chr6 140070816 140071579 -42343663 + L1ME LINE L1 2122 2906 -3634 23 54 0 0 chr6 140074618 140074655 -42340587 + AT_rich Low_complexity Low_complexity 1 37 0 480 182 30 0 chr6 140074656 140074755 -42340487 + L1ME LINE L1 2893 2994 -3546 339 295 19 0 chr6 140074755 140074860 -42340382 + U6 snRNA snRNA 1 107 0 2274 276 60 30 chr6 140074876 140076285 -42338957 + L1ME LINE L1 2979 4429 -2111 381 247 0 0 chr6 140076285 140076362 -42338880 - Tigger3(Golem) DNA MER2_type -1 3028 2952 1006 165 123 60 chr6 140076364 140076519 -42338723 - Tigger3(Golem) DNA MER2_type -780 2248 2104 1760 187 0 3 chr6 140076519 140076825 -42338417 + AluSx SINE Alu 1 305 0 1006 165 123 60 chr6 140076825 140077079 -42338163 - Tigger3(Golem) DNA MER2_type -924 2104 2 821 281 19 13 chr6 140077082 140077395 -42337847 + L1ME LINE L1 4419 4733 -1807 2398 186 54 4 chr6 140077395 140077891 -42337351 + Tigger1 DNA MER2_type 1 521 -1897 25 65 0 0 chr6 140079554 140079600 -42335642 + AT_rich Low_complexity Low_complexity 1 46 0 676 177 16 16 chr6 140079600 140079724 -42335518 - FLAM_C SINE Alu -9 124 1 21 36 0 0 chr6 140079906 140079934 -42335308 + AT_rich Low_complexity Low_complexity 1 28 0 280 209 0 82 chr6 140080645 140080755 -42334487 - LTR67 LTR ERVL 0 557 457 2328 96 0 3 chr6 140080937 140081250 -42333992 - AluSx SINE Alu 0 312 1 223 333 41 41 chr6 140082470 140082593 -42332649 - MER5A DNA MER1_type -14 175 53 346 279 51 44 chr6 140082718 140082876 -42332366 - MER103 DNA DNA 0 166 8 2174 111 6 49 chr6 140083584 140083909 -42331333 - AluSx SINE Alu -1 311 1 246 105 0 0 chr6 140084720 140084758 -42330484 + (CA)n Simple_repeat Simple_repeat 2 39 0 3100 133 82 8 chr6 140084995 140085485 -42329757 + MER1A DNA MER1_type 2 527 0 2422 68 10 0 chr6 140085783 140086079 -42329163 + AluY SINE Alu 1 299 -12 369 281 122 22 chr6 140086198 140086337 -42328905 - MER91A DNA MER1_type -43 153 1 2349 91 0 7 chr6 140086918 140087215 -42328027 - AluSg SINE Alu -15 295 1 236 304 78 20 chr6 140087317 140087419 -42327823 - MIR3 SINE MIR -50 158 51 1575 123 32 56 chr6 140087977 140088262 -42326980 - AluSx SINE Alu 0 312 35 399 207 166 53 chr6 140088437 140088606 -42326636 + L2 LINE L2 3126 3313 0 642 125 19 10 chr6 140089562 140089666 -42325576 + AluSg/x SINE Alu 192 296 -16 419 82 38 65 chr6 140089738 140090187 -42325055 + (TA)n Simple_repeat Simple_repeat 1 436 0 2421 106 0 0 chr6 140091230 140091542 -42323700 - AluSx SINE Alu 0 312 1 14411 130 28 14 chr6 140092222 140093756 -42321486 - Tigger1 DNA MER2_type 0 2418 836 2012 130 3 46 chr6 140093756 140094079 -42321163 - AluSx SINE Alu -3 309 1 14411 130 28 14 chr6 140094079 140094928 -42320314 - Tigger1 DNA MER2_type -1582 836 1 22 35 0 0 chr6 140095017 140095046 -42320196 + AT_rich Low_complexity Low_complexity 1 29 0 2060 173 32 0 chr6 140095047 140095599 -42319643 - L1PA16 LINE L1 -722 5444 4865 4661 117 18 8 chr6 140095599 140096327 -42318915 + L1PA16 LINE L1 5421 6156 -10 2060 173 32 0 chr6 140096327 140096338 -42318904 - L1P4 LINE L1 -1301 4865 4856 26 0 0 0 chr6 140096366 140096392 -42318850 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr6 140097087 140097110 -42318132 + AT_rich Low_complexity Low_complexity 1 23 0 1726 183 7 3 chr6 140097765 140098055 -42317187 + AluSx SINE Alu 1 291 -21 2115 117 3 17 chr6 140098151 140098451 -42316791 - AluSx SINE Alu -16 296 1 186 326 87 11 chr6 140098638 140098730 -42316512 + L2 LINE L2 2968 3066 -247 2253 100 0 3 chr6 140098798 140099099 -42316143 + AluY SINE Alu 1 300 -11 265 299 58 32 chr6 140100159 140100313 -42314929 + L1ME4a LINE L1 5563 5720 -401 180 0 0 0 chr6 140100332 140100352 -42314890 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1724 202 0 0 chr6 140100355 140100637 -42314605 - AluJb SINE Alu -30 282 1 1878 131 29 0 chr6 140100716 140100991 -42314251 + AluSq SINE Alu 1 283 -30 461 259 34 68 chr6 140101010 140101273 -42313969 + L1ME4a LINE L1 5841 6094 -27 428 318 39 14 chr6 140101469 140101672 -42313570 - MIR SINE MIR -49 213 7 758 311 166 30 chr6 140102240 140102941 -42312301 + L2 LINE L2 2092 2887 -427 2251 128 0 0 chr6 140103454 140103939 -42311303 + AluSx SINE Alu 1 485 0 1750 175 10 3 chr6 140105598 140105895 -42309347 - AluJo SINE Alu -13 299 1 1458 279 76 51 chr6 140106487 140106974 -42308268 - L2 LINE L2 -109 3204 2731 219 36 0 0 chr6 140106974 140107002 -42308240 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 1907 110 0 47 chr6 140107004 140107303 -42307939 - AluSx SINE Alu -27 285 1 1458 279 76 51 chr6 140107303 140107607 -42307635 - L2 LINE L2 -582 2731 2397 2165 83 11 7 chr6 140108000 140108278 -42306964 + AluSc SINE Alu 22 300 -9 23 54 0 0 chr6 140108717 140108754 -42306488 + AT_rich Low_complexity Low_complexity 1 37 0 1392 156 63 0 chr6 140108844 140109113 -42306129 + MER2 DNA MER2_type 3 288 -57 216 86 0 0 chr6 140109115 140109150 -42306092 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2774 87 62 0 chr6 140109162 140109566 -42305676 - L1PA14 LINE L1 -2 6159 5731 420 190 0 13 chr6 140109566 140109636 -42305606 + MER2 DNA MER2_type 275 345 0 209 265 0 0 chr6 140109921 140109970 -42305272 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 195 188 0 0 chr6 140110058 140110106 -42305136 + (TA)n Simple_repeat Simple_repeat 1 48 0 209 136 0 23 chr6 140110140 140110184 -42305058 + (TA)n Simple_repeat Simple_repeat 1 43 0 2629 226 46 18 chr6 140110184 140110812 -42304430 + MER82 DNA MER2_type 2 647 -6 22 0 0 0 chr6 140110957 140110979 -42304263 + AT_rich Low_complexity Low_complexity 1 22 0 1159 204 35 84 chr6 140111819 140112057 -42303185 - MER58B DNA MER1_type -2094 326 108 1725 177 7 11 chr6 140112057 140112366 -42302876 + AluJb SINE Alu 1 308 0 1159 204 35 84 chr6 140112366 140112469 -42302773 - MER58B DNA MER1_type -2312 108 1 1925 133 61 3 chr6 140113165 140113458 -42301784 - AluSx SINE Alu -2 310 1 243 250 33 17 chr6 140113461 140113521 -42301721 + MER5A DNA MER1_type 128 188 -1 2155 114 3 7 chr6 140114335 140114642 -42300600 + AluSx SINE Alu 1 306 -6 2029 264 56 74 chr6 140114984 140116247 -42298995 + L1M3d LINE L1 1 1014 -4877 1204 246 30 8 chr6 140116266 140116636 -42298606 + L1MB1 LINE L1 1161 1538 -4846 4988 198 51 5 chr6 140116654 140117921 -42297321 + L1MB1 LINE L1 2886 4211 -2171 6250 134 57 32 chr6 140117925 140118821 -42296421 - Tigger3b DNA MER2_type -1797 1231 359 609 133 53 26 chr6 140118821 140118934 -42296308 + FLAM_C SINE Alu 2 117 -16 6250 134 57 32 chr6 140118934 140119140 -42296102 - Tigger3b DNA MER2_type -2669 359 94 1766 188 0 23 chr6 140119140 140119444 -42295798 - AluJo SINE Alu -15 297 1 6250 134 57 32 chr6 140119444 140119540 -42295702 - Tigger3b DNA MER2_type -2934 94 2 4987 174 48 56 chr6 140119540 140120314 -42294928 + L1MB1 LINE L1 4209 4988 -1416 1731 163 45 10 chr6 140120314 140120602 -42294640 + AluJb SINE Alu 1 298 -14 4987 174 48 56 chr6 140120602 140121259 -42293983 + L1MB1 LINE L1 4988 5649 -755 864 111 17 0 chr6 140121259 140121376 -42293866 + FLAM_C SINE Alu 1 119 -14 4987 174 48 56 chr6 140121376 140122131 -42293111 + L1MB1 LINE L1 5649 6404 0 209 333 45 36 chr6 140122900 140123011 -42292231 - MIR SINE MIR -110 152 41 520 295 8 0 chr6 140123094 140123223 -42292019 - MIR3 SINE MIR -3 205 76 249 320 90 0 chr6 140123330 140123430 -42291812 + MIR SINE MIR 6 114 -148 21 0 0 0 chr6 140123430 140123451 -42291791 + AT_rich Low_complexity Low_complexity 1 21 0 793 161 0 0 chr6 140123451 140123569 -42291673 - FLAM_C SINE Alu -15 118 1 506 264 100 7 chr6 140123737 140123877 -42291365 - MIR SINE MIR -78 184 32 1998 125 33 7 chr6 140124549 140124853 -42290389 - AluSx SINE Alu 0 312 1 1327 230 44 39 chr6 140124880 140125289 -42289953 - L1ME3A LINE L1 -43 6127 5717 687 222 108 5 chr6 140125314 140125517 -42289725 + L1ME2 LINE L1 5909 6132 -32 2485 71 0 0 chr6 140125952 140126249 -42288993 - AluY SINE Alu -14 297 1 267 274 59 39 chr6 140126542 140126644 -42288598 - MIR SINE MIR -153 109 6 530 291 70 35 chr6 140127256 140127486 -42287756 + MIR SINE MIR 25 262 0 183 188 0 0 chr6 140127626 140127658 -42287584 - L2 LINE L2 -19 3294 3263 253 288 192 16 chr6 140127710 140127835 -42287407 - MIR SINE MIR -66 196 50 1749 201 0 0 chr6 140127992 140128285 -42286957 + AluJb SINE Alu 1 293 -19 1669 159 7 35 chr6 140128295 140128625 -42286617 + AluJo SINE Alu 1 322 0 675 165 31 24 chr6 140129023 140129150 -42286092 + FLAM_C SINE Alu 1 128 -5 1634 169 9 66 chr6 140129287 140129607 -42285635 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr6 140129626 140129648 -42285594 + AT_rich Low_complexity Low_complexity 1 22 0 2031 162 50 72 chr6 140131414 140131514 -42283728 + MLT1C LTR MaLR 3 104 -363 2153 129 0 0 chr6 140131514 140131808 -42283434 + AluSx SINE Alu 1 294 -18 2031 162 50 72 chr6 140131808 140132182 -42283060 + MLT1C LTR MaLR 104 467 0 1897 175 0 10 chr6 140132213 140132521 -42282721 + AluJo SINE Alu 3 307 -5 1991 158 0 0 chr6 140132876 140133160 -42282082 + AluSx SINE Alu 1 284 -28 315 371 156 12 chr6 140133305 140133736 -42281506 - L2 LINE L2 -401 2913 2421 307 286 9 48 chr6 140133751 140133856 -42281386 - L2 LINE L2 -995 2319 2219 311 326 11 11 chr6 140134113 140134208 -42281034 - L2 LINE L2 0 3272 3178 22 0 0 0 chr6 140134217 140134239 -42281003 + AT_rich Low_complexity Low_complexity 1 22 0 241 227 40 0 chr6 140134636 140134711 -42280531 + L1ME4a LINE L1 5527 5604 -517 583 265 51 0 chr6 140135014 140135210 -42280032 + L1MC5 LINE L1 7706 7911 -50 302 223 90 103 chr6 140135221 140135522 -42279720 + L1ME4a LINE L1 5601 5897 -224 1250 148 0 0 chr6 140135558 140135740 -42279502 + AluJb SINE Alu 1 182 -130 21 0 0 0 chr6 140135966 140135987 -42279255 + AT_rich Low_complexity Low_complexity 1 21 0 552 238 97 90 chr6 140136273 140136422 -42278820 + HAL1 LINE L1 816 969 -1538 315 0 0 0 chr6 140136422 140136457 -42278785 + (CA)n Simple_repeat Simple_repeat 2 36 0 552 238 97 90 chr6 140136457 140136597 -42278645 + HAL1 LINE L1 969 1107 -1400 326 228 22 88 chr6 140136599 140136735 -42278507 + MLT1D LTR MaLR 1 107 -398 878 279 119 22 chr6 140136745 140137247 -42277995 + HAL1 LINE L1 1247 1797 -710 2896 271 119 13 chr6 140137799 140138760 -42276482 + L2 LINE L2 1983 3116 -197 399 21 0 0 chr6 140138760 140138808 -42276434 + (CA)n Simple_repeat Simple_repeat 1 48 0 2896 271 119 13 chr6 140138808 140139015 -42276227 + L2 LINE L2 3116 3300 -13 396 155 14 0 chr6 140139767 140139838 -42275404 + U4 snRNA snRNA 1 72 -73 1582 207 7 3 chr6 140139863 140140162 -42275080 + AluJb SINE Alu 2 301 -11 1733 139 51 14 chr6 140140639 140140934 -42274308 + AluJb SINE Alu 1 306 -6 23 0 0 0 chr6 140141303 140141326 -42273916 + AT_rich Low_complexity Low_complexity 1 23 0 669 176 0 8 chr6 140142750 140142889 -42272353 - FLAM_C SINE Alu 0 138 1 824 178 0 37 chr6 140143304 140143467 -42271775 + FRAM SINE Alu 1 40 0 24 0 0 0 chr6 140143467 140143491 -42271751 + AT_rich Low_complexity Low_complexity 1 24 0 672 148 17 9 chr6 140143780 140143895 -42271347 + FLAM_A SINE Alu 6 121 -21 25 0 0 0 chr6 140143908 140143933 -42271309 + AT_rich Low_complexity Low_complexity 1 25 0 1439 134 79 76 chr6 140144011 140144302 -42270940 + AluJb SINE Alu 1 292 -20 197 132 0 57 chr6 140144730 140144783 -42270459 + (A)n Simple_repeat Simple_repeat 1 50 0 243 262 49 138 chr6 140145887 140146077 -42269165 - MIR SINE MIR -56 206 26 1076 154 6 16 chr6 140146558 140146740 -42268502 + AluJo SINE Alu 56 235 -77 2186 132 19 8 chr6 140146740 140147103 -42268139 - PABL_A-int LTR ERV1 -4591 424 58 1263 91 46 10 chr6 140147110 140147307 -42267935 - PABL_B LTR ERV1 -462 205 2 442 136 0 12 chr6 140147307 140147388 -42267854 + AluJo SINE Alu 232 311 -1 243 300 88 0 chr6 140147757 140147837 -42267405 + MER5B DNA MER1_type 53 139 -39 956 91 7 63 chr6 140147837 140147980 -42267262 + AluSq/x SINE Alu 1 135 -178 1808 154 14 0 chr6 140147980 140148299 -42266943 + AluSq SINE Alu 1 323 0 1298 191 62 13 chr6 140148735 140149044 -42266198 + MLT2C1 LTR ERVL 1 324 -73 257 108 0 0 chr6 140149174 140149211 -42266031 - tRNA-Arg-AGA tRNA tRNA -39 37 1 1735 129 85 52 chr6 140149312 140149675 -42265567 - THE1C LTR MaLR 0 375 1 210 309 103 24 chr6 140149876 140150002 -42265240 + MIR3 SINE MIR 35 170 -38 1799 153 12 55 chr6 140150222 140150548 -42264694 + AluJo SINE Alu 1 312 0 543 224 55 6 chr6 140151488 140151653 -42263589 + Cheshire DNA MER1_type 1984 2156 -264 378 325 16 8 chr6 140152093 140152219 -42263023 + L2 LINE L2 3183 3309 -4 216 392 67 8 chr6 140152439 140152559 -42262683 - L2 LINE L2 -12 3260 3134 835 252 31 20 chr6 140152818 140153072 -42262170 + HAL1 LINE L1 573 829 -1678 1547 134 36 2 chr6 140153332 140153596 -42261646 + MLT1B LTR MaLR 127 389 -1 461 237 0 8 chr6 140153976 140154094 -42261148 + L1M4 LINE L1 3736 3852 -2294 183 80 0 0 chr6 140155386 140155411 -42259831 + (T)n Simple_repeat Simple_repeat 1 25 0 1279 243 98 56 chr6 140156209 140156584 -42258658 - L1MC4a LINE L1 -1898 5910 5505 2447 77 0 0 chr6 140156584 140156895 -42258347 - AluY SINE Alu 0 311 1 1279 243 98 56 chr6 140156895 140157038 -42258204 - L1MC4a LINE L1 -2303 5505 5370 21 57 0 0 chr6 140157585 140157620 -42257622 + AT_rich Low_complexity Low_complexity 1 35 0 978 248 152 42 chr6 140158127 140158642 -42256600 - MLT1G1 LTR MaLR -12 543 1 1998 131 77 11 chr6 140158857 140159207 -42256035 - THE1C LTR MaLR 0 375 3 230 189 0 0 chr6 140160315 140160352 -42254890 + Alu SINE Alu 1 37 -265 1027 124 45 0 chr6 140161385 140161562 -42253680 - L1MA8 LINE L1 -104 6187 6003 1681 179 3 3 chr6 140161634 140161931 -42253311 + AluJb SINE Alu 1 297 -15 1336 189 44 51 chr6 140162147 140162443 -42252799 + AluJo SINE Alu 1 294 -18 272 337 47 0 chr6 140163455 140163541 -42251701 - L2 LINE L2 -1 3312 3223 437 303 91 29 chr6 140163548 140163756 -42251486 - L2 LINE L2 -852 2462 2242 817 175 209 6 chr6 140163799 140163976 -42251266 - MER58A DNA MER1_type -11 213 1 252 333 43 32 chr6 140164602 140164695 -42250547 - MIR SINE MIR -163 99 6 66 0 0 0 chr6 140165606 140165672 -42249570 + AT_rich Low_complexity Low_complexity 1 66 0 1812 175 0 7 chr6 140165890 140166199 -42249043 - AluJb SINE Alu -5 307 1 344 277 145 24 chr6 140166436 140166602 -42248640 + MIR3 SINE MIR 16 201 -7 21 36 0 0 chr6 140167008 140167036 -42248206 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr6 140167200 140167232 -42248010 + (T)n Simple_repeat Simple_repeat 1 32 0 300 169 0 0 chr6 140167592 140167669 -42247573 + T-rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr6 140169732 140169754 -42245488 + AT_rich Low_complexity Low_complexity 1 22 0 348 83 0 0 chr6 140172973 140173021 -42242221 + (TA)n Simple_repeat Simple_repeat 1 48 0 231 149 21 0 chr6 140173031 140173078 -42242164 - L1MC4 LINE L1 -1339 6703 6656 614 89 0 0 chr6 140173139 140173229 -42242013 + AluSg/x SINE Alu 214 303 -6 265 396 60 0 chr6 140173237 140173386 -42241856 - L2 LINE L2 -205 3067 2910 846 110 0 0 chr6 140174030 140174148 -42241094 + FLAM_C SINE Alu 1 118 -25 25 0 0 0 chr6 140174452 140174477 -42240765 + AT_rich Low_complexity Low_complexity 1 25 0 188 35 35 0 chr6 140174575 140174604 -42240638 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr6 140175167 140175193 -42240049 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1681 111 0 0 chr6 140175195 140175420 -42239822 - AluSq SINE Alu -35 278 54 272 198 50 59 chr6 140175563 140175664 -42239578 - L1MC5 LINE L1 -141 7820 7721 36 23 0 0 chr6 140175791 140175834 -42239408 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 140176470 140176491 -42238751 + AT_rich Low_complexity Low_complexity 1 21 0 242 242 0 16 chr6 140176607 140176669 -42238573 + 7SK RNA RNA 12 72 -121 22 56 0 0 chr6 140177622 140177658 -42237584 + AT_rich Low_complexity Low_complexity 1 36 0 498 232 167 30 chr6 140178611 140178809 -42236433 - L2 LINE L2 -44 3269 3045 224 293 49 0 chr6 140178813 140178895 -42236347 - L2 LINE L2 -50 3263 3178 22 56 0 0 chr6 140180052 140180088 -42235154 + AT_rich Low_complexity Low_complexity 1 36 0 5167 190 112 20 chr6 140180756 140182080 -42233162 - Charlie1a DNA MER1_type -9 1446 1 25 0 0 0 chr6 140182800 140182825 -42232417 + AT_rich Low_complexity Low_complexity 1 25 0 829 189 6 12 chr6 140182828 140182992 -42232250 + FRAM SINE Alu 1 163 -13 837 185 56 11 chr6 140183438 140183616 -42231626 - MER5A DNA MER1_type -3 186 1 472 315 42 24 chr6 140183780 140183945 -42231297 - MIR3 SINE MIR -31 177 10 1912 121 22 35 chr6 140184618 140184932 -42230310 - AluJb SINE Alu -2 310 1 266 315 130 0 chr6 140184943 140185035 -42230207 - L2 LINE L2 0 3313 3210 2417 80 0 0 chr6 140185230 140185541 -42229701 - AluY SINE Alu 0 311 1 24 0 0 0 chr6 140186878 140186902 -42228340 + AT_rich Low_complexity Low_complexity 1 24 0 246 32 0 0 chr6 140187895 140187926 -42227316 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 354 264 208 13 chr6 140187935 140188166 -42227076 - L1MC4a LINE L1 -1911 5897 5622 23 0 0 0 chr6 140188861 140188884 -42226358 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr6 140188986 140189037 -42226205 + AT_rich Low_complexity Low_complexity 1 51 0 180 312 40 56 chr6 140190753 140190878 -42224364 + L2 LINE L2 2968 3090 -182 26 50 0 0 chr6 140190882 140190922 -42224320 + AT_rich Low_complexity Low_complexity 1 40 0 2190 109 3 0 chr6 140191454 140191747 -42223495 + AluSc SINE Alu 1 294 -15 2081 107 34 0 chr6 140191815 140192106 -42223136 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr6 140192182 140192203 -42223039 + AT_rich Low_complexity Low_complexity 1 21 0 231 269 77 0 chr6 140192474 140192552 -42222690 - MER112 DNA MER1_type -4 256 173 203 308 56 63 chr6 140192629 140192772 -42222470 - L2 LINE L2 -1048 2266 2125 263 302 12 0 chr6 140193493 140193579 -42221663 + L3 LINE CR1 883 969 -608 550 296 102 44 chr6 140193642 140194003 -42221239 + L3 LINE CR1 1107 1488 -89 219 233 17 17 chr6 140194611 140194671 -42220571 + (TA)n Simple_repeat Simple_repeat 1 60 0 30 27 0 0 chr6 140195830 140195867 -42219375 + AT_rich Low_complexity Low_complexity 1 37 0 2331 65 3 20 chr6 140196312 140196618 -42218624 - AluY SINE Alu -10 301 1 689 199 149 0 chr6 140197045 140197206 -42218036 + MER3 DNA MER1_type 3 187 -22 1644 148 75 0 chr6 140197720 140197881 -42217361 - AluJb SINE Alu -13 299 152 306 0 0 0 chr6 140197881 140197915 -42217327 + (TG)n Simple_repeat Simple_repeat 2 35 0 1644 148 75 0 chr6 140197915 140198031 -42217211 - AluJb SINE Alu -160 152 1 311 188 87 0 chr6 140198165 140198234 -42217008 - MIR SINE MIR -107 155 81 306 0 0 0 chr6 140198334 140198368 -42216874 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr6 140199741 140199769 -42215473 + AT_rich Low_complexity Low_complexity 1 28 0 186 103 0 0 chr6 140199888 140199917 -42215325 + (TG)n Simple_repeat Simple_repeat 2 30 0 254 323 81 16 chr6 140200973 140201097 -42214145 + MIR3 SINE MIR 9 140 -68 407 45 197 0 chr6 140202187 140202253 -42212989 + MADE1 DNA Mariner 1 79 -1 279 333 69 39 chr6 140202549 140202780 -42212462 + L1ME LINE L1 5590 5827 -294 183 42 0 0 chr6 140202850 140202874 -42212368 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 240 35 0 0 chr6 140202873 140202902 -42212340 + (CA)n Simple_repeat Simple_repeat 1 29 0 198 91 0 0 chr6 140203929 140203962 -42211280 + (TCTCTG)n Simple_repeat Simple_repeat 1 33 0 242 254 27 64 chr6 140204123 140204233 -42211009 + MIR SINE MIR 157 262 0 1730 193 60 85 chr6 140204616 140204806 -42210436 - L1ME1 LINE L1 -135 6031 5838 2044 121 3 10 chr6 140204806 140205113 -42210129 - AluSx SINE Alu -7 305 1 1730 193 60 85 chr6 140205113 140205477 -42209765 - L1ME1 LINE L1 -328 5838 5491 356 284 178 15 chr6 140206163 140206360 -42208882 - MIR SINE MIR -5 257 29 188 361 62 28 chr6 140206596 140206740 -42208502 - L2 LINE L2 -218 3054 2906 384 297 103 7 chr6 140207787 140207932 -42207310 + MIR SINE MIR 18 176 -86 25 0 0 0 chr6 140208231 140208256 -42206986 + AT_rich Low_complexity Low_complexity 1 25 0 303 328 157 0 chr6 140210176 140210374 -42204868 - MIR SINE MIR 0 262 34 566 173 109 0 chr6 140210582 140210692 -42204550 + L2 LINE L2 3192 3313 0 427 322 119 27 chr6 140211177 140211438 -42203804 - L1M4 LINE L1 -1313 4833 4549 355 324 32 38 chr6 140211576 140211761 -42203481 - L3 LINE CR1 -331 1246 1063 799 297 147 24 chr6 140211790 140212170 -42203072 - L3 LINE CR1 -881 696 270 1665 176 43 86 chr6 140212443 140212931 -42202311 - MLT1C LTR MaLR 0 467 1 2308 91 0 28 chr6 140212990 140213309 -42201933 + AluSg SINE Alu 1 310 0 243 319 43 52 chr6 140214355 140214471 -42200771 - MIR SINE MIR -69 139 25 378 314 27 27 chr6 140214999 140215184 -42200058 - L1MCa LINE L1 -4908 1518 1334 207 0 0 0 chr6 140215203 140215226 -42200016 + (TTG)n Simple_repeat Simple_repeat 1 23 0 1757 212 69 9 chr6 140215861 140216324 -42198918 - L1MC4a LINE L1 -250 7558 7068 445 128 18 101 chr6 140216413 140216462 -42198780 - L1MA10 LINE L1 -14 6320 6283 2212 98 0 7 chr6 140216462 140216757 -42198485 - AluSg SINE Alu -17 293 1 445 128 18 101 chr6 140216757 140216816 -42198426 - L1MA10 LINE L1 -51 6283 6221 6179 155 57 30 chr6 140216949 140218492 -42196750 + L1MA2 LINE L1 4989 6071 -233 204 67 0 0 chr6 140218492 140218522 -42196720 + (TG)n Simple_repeat Simple_repeat 2 31 0 6179 155 57 30 chr6 140218522 140218763 -42196479 + L1MA2 LINE L1 6071 6304 0 1404 127 10 5 chr6 140218773 140218978 -42196264 + AluJb SINE Alu 9 214 -98 517 183 0 0 chr6 140218997 140219079 -42196163 - AluJb SINE Alu -88 224 143 613 222 79 0 chr6 140219111 140219300 -42195942 + L1MC4 LINE L1 6918 7121 -921 1952 136 27 3 chr6 140219432 140219726 -42195516 - AluJo SINE Alu -11 301 1 29 0 0 0 chr6 140221239 140221268 -42193974 + AT_rich Low_complexity Low_complexity 1 29 0 1911 166 0 3 chr6 140221574 140221864 -42193378 + AluJo SINE Alu 1 289 -23 2347 116 0 0 chr6 140222541 140222852 -42192390 + AluSx SINE Alu 1 311 -1 2611 41 0 19 chr6 140222866 140223183 -42192059 + AluY SINE Alu 1 311 0 2540 188 18 14 chr6 140223473 140223973 -42191269 - MLT2B1 LTR ERVL -18 502 1 1736 157 3 26 chr6 140224145 140224451 -42190791 - AluSx SINE Alu -13 299 1 189 286 48 16 chr6 140224466 140224529 -42190713 - MIR SINE MIR -109 153 89 873 116 0 8 chr6 140224827 140224948 -42190294 + AluJb SINE Alu 14 133 -179 1937 156 17 10 chr6 140224951 140225276 -42189966 + AluSx SINE Alu 1 312 0 1593 114 27 0 chr6 140225870 140226132 -42189110 - L1MA5A LINE L1 -6 6291 6023 1755 127 89 0 chr6 140227219 140227502 -42187740 + AluSg SINE Alu 1 306 0 21 0 0 0 chr6 140227525 140227546 -42187696 + AT_rich Low_complexity Low_complexity 1 21 0 472 281 96 11 chr6 140227674 140227852 -42187390 - L1ME4a LINE L1 -224 5897 5705 6573 78 10 8 chr6 140228557 140229654 -42185588 + L1PA8 LINE L1 5069 6170 -2 311 167 58 25 chr6 140229682 140229802 -42185440 + (TA)n Simple_repeat Simple_repeat 2 125 0 350 261 7 124 chr6 140230428 140230579 -42184663 + MER5B DNA MER1_type 1 146 -43 417 161 46 35 chr6 140230579 140230666 -42184576 - MER5A DNA MER1_type 0 189 102 1669 175 54 3 chr6 140231361 140231658 -42183584 - AluJb SINE Alu 0 312 1 23 54 0 0 chr6 140231662 140231699 -42183543 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr6 140231789 140231825 -42183417 + AT_rich Low_complexity Low_complexity 1 36 0 204 163 0 0 chr6 140232177 140232220 -42183022 + CT-rich Low_complexity Low_complexity 2 44 0 504 254 48 38 chr6 140232315 140232524 -42182718 - L1ME4a LINE L1 -238 5883 5673 266 289 26 13 chr6 140233026 140233102 -42182140 + MER5A DNA MER1_type 113 189 0 1921 163 0 3 chr6 140235377 140235684 -42179558 + AluJb SINE Alu 1 306 0 495 291 11 6 chr6 140236114 140236296 -42178946 - LTR67 LTR ERVL -7 550 368 277 241 115 55 chr6 140236682 140236935 -42178307 + L1MC4a LINE L1 5790 6057 -1751 1540 176 112 29 chr6 140237169 140237516 -42177726 - LTR32 LTR ERVL -82 389 14 319 296 27 16 chr6 140237516 140237702 -42177540 - HAL1 LINE L1 -295 2212 2025 * 30038 106 12 61 chr6 140237692 140240484 -42174758 - L1PA7 LINE L1 -6 6148 3221 2945 6 0 0 chr6 140240484 140240802 -42174440 + AluYb8 SINE Alu 1 318 0 30038 106 12 61 chr6 140240802 140244471 -42170771 - L1PA7 LINE L1 -2933 3221 13 254 250 60 0 chr6 140244656 140244756 -42170486 + L1MC4a LINE L1 6566 6671 -1137 761 236 30 65 chr6 140244784 140245237 -42170005 - MLT1A1 LTR MaLR 0 365 1 346 254 27 36 chr6 140245270 140245380 -42169862 + L1MC4 LINE L1 6888 6996 -1046 332 315 136 26 chr6 140245511 140245920 -42169322 + L1MC4 LINE L1 6999 7458 -584 227 260 180 0 chr6 140245926 140246026 -42169216 + L1MC5 LINE L1 7308 7425 -536 368 353 78 19 chr6 140246087 140246356 -42168886 + L1MC4 LINE L1 7606 7890 -152 21 0 0 0 chr6 140246388 140246409 -42168833 + AT_rich Low_complexity Low_complexity 1 21 0 2048 139 3 7 chr6 140246430 140246739 -42168503 + AluSx SINE Alu 1 308 -4 2794 10 0 0 chr6 140246801 140247107 -42168135 + AluYa5 SINE Alu 1 306 -5 2117 169 106 9 chr6 140247281 140247707 -42167535 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr6 140248228 140248249 -42166993 + AT_rich Low_complexity Low_complexity 1 21 0 375 41 0 0 chr6 140248607 140248656 -42166586 + (CA)n Simple_repeat Simple_repeat 2 50 0 195 42 0 0 chr6 140248655 140248679 -42166563 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 246 217 29 14 chr6 140249467 140249536 -42165706 + CT-rich Low_complexity Low_complexity 4 73 0 182 254 90 45 chr6 140249708 140249775 -42165467 + L2 LINE L2 3240 3309 -4 2562 56 0 0 chr6 140250168 140250487 -42164755 - L1PA6 LINE L1 -5 6149 5831 35368 81 19 10 chr6 140250487 140256228 -42159014 + L1PA6 LINE L1 33 5822 -332 4614 100 44 1 chr6 140257435 140258095 -42157147 + LTR12 LTR ERV1 1 688 0 765 289 103 34 chr6 140258155 140258573 -42156669 - LTR33 LTR ERVL -52 469 23 182 224 90 0 chr6 140258631 140258698 -42156544 - MIR SINE MIR -70 192 120 2082 133 0 7 chr6 140258892 140259186 -42156056 - AluSx SINE Alu -16 296 5 319 354 24 16 chr6 140259205 140259332 -42155910 + L1M4 LINE L1 4015 4142 -2004 870 219 149 93 chr6 140259359 140259654 -42155588 + MSTD LTR MaLR 1 323 -73 4276 148 14 9 chr6 140259654 140260425 -42154817 + L1MA4 LINE L1 5526 6300 0 870 219 149 93 chr6 140260425 140260504 -42154738 + MSTD LTR MaLR 323 396 0 340 292 134 13 chr6 140260591 140260978 -42154264 + L1M4 LINE L1 4266 4699 -1447 759 240 58 19 chr6 140261152 140261477 -42153765 + L1M4 LINE L1 4913 5250 -896 3988 242 33 56 chr6 140261511 140265251 -42149991 + L1PB4 LINE L1 131 3629 -3220 * 3997 157 11 34 chr6 140265226 140265458 -42149784 + L1PB4 LINE L1 5183 5419 -1440 2339 99 3 0 chr6 140265458 140265762 -42149480 + AluSg SINE Alu 5 309 -1 3997 157 11 34 chr6 140265762 140266568 -42148674 + L1PB4 LINE L1 5419 6192 -667 6588 80 5 1 chr6 140266568 140267867 -42147375 + L1PA14 LINE L1 4854 6152 -9 3967 141 12 5 chr6 140267903 140268575 -42146667 + L1PB4 LINE L1 6182 6858 -1 242 275 67 20 chr6 140268730 140268879 -42146363 + L1ME3 LINE L1 5100 5255 -891 * 422 313 110 19 chr6 140268864 140269283 -42145959 + L1ME3 LINE L1 5481 5937 -225 2570 150 95 10 chr6 140269561 140270128 -42145114 - MER4B LTR ERV1 0 779 1 379 346 92 32 chr6 140270173 140270390 -42144852 + MIR SINE MIR 13 242 -20 244 286 50 75 chr6 140270466 140270627 -42144615 + L2 LINE L2 3116 3272 -41 202 333 0 0 chr6 140270700 140270754 -42144488 - MIR SINE MIR -160 102 49 3048 150 170 36 chr6 140270907 140271635 -42143607 - LTR1B LTR ERV1 0 826 1 761 179 107 6 chr6 140271635 140271803 -42143439 + MER20 DNA MER1_type 35 219 0 614 268 60 27 chr6 140272726 140272909 -42142333 + MIR SINE MIR 58 246 -16 4183 68 15 0 chr6 140272917 140273463 -42141779 - MER41A LTR ERV1 0 554 1 466 100 0 0 chr6 140273547 140273617 -42141625 + LTR7 LTR ERV1 1 70 -380 589 77 0 0 chr6 140273622 140273713 -42141529 + HERVH LTR ERV1 642 732 -6981 14666 89 34 20 chr6 140273715 140276060 -42139182 + HERVH LTR ERV1 609 2987 -4726 897 133 7 0 chr6 140276054 140276204 -42139038 + HERVH LTR ERV1 3140 3290 -4423 * 3254 109 0 6 chr6 140276194 140276699 -42138543 + HERVH LTR ERV1 3492 3993 -3720 4083 142 1 3 chr6 140276701 140277364 -42137878 + HERVH LTR ERV1 4488 5149 -2564 1240 132 33 0 chr6 140277365 140277578 -42137664 + HERVH LTR ERV1 5600 5819 -1894 2335 82 45 13 chr6 140277578 140277956 -42137286 + HERVH LTR ERV1 7324 7713 0 3367 71 0 7 chr6 140277956 140278407 -42136835 + LTR7 LTR ERV1 1 448 -2 333 0 0 0 chr6 140278775 140278812 -42136430 + (TA)n Simple_repeat Simple_repeat 1 37 0 197 426 47 8 chr6 140278815 140278944 -42136298 + L2 LINE L2 3138 3271 -1 236 259 17 0 chr6 140279480 140279538 -42135704 + MIR SINE MIR 86 144 -64 290 268 21 21 chr6 140279756 140279835 -42135407 + CT-rich Low_complexity Low_complexity 4 85 -15 1784 152 0 11 chr6 140279835 140280112 -42135130 - AluJb SINE Alu -38 274 1 290 268 21 21 chr6 140280112 140280129 -42135113 + CT-rich Low_complexity Low_complexity 84 100 0 504 229 97 7 chr6 140280436 140280580 -42134662 - MLT1L LTR MaLR -14 601 445 2114 131 35 30 chr6 140280704 140281077 -42134165 - THE1C LTR MaLR 0 375 1 249 279 58 29 chr6 140281134 140281238 -42134004 - MLT1L LTR MaLR -367 248 142 827 253 64 11 chr6 140281481 140281746 -42133496 + L2 LINE L2 2139 2417 -897 4895 174 29 22 chr6 140281748 140283733 -42131509 + L1MA6 LINE L1 4297 6300 0 2004 157 23 6 chr6 140284079 140284430 -42130812 + MLT1B LTR MaLR 22 378 -12 280 286 16 0 chr6 140285823 140285949 -42129293 + L1M4 LINE L1 3341 3468 -2678 378 143 0 0 chr6 140286756 140286819 -42128423 + (CA)n Simple_repeat Simple_repeat 2 64 0 476 274 17 0 chr6 140286872 140286989 -42128253 + MLT1G1 LTR MaLR 25 143 -452 564 203 8 0 chr6 140287000 140287123 -42128119 - L1MD3 LINE L1 -8 7987 7864 909 272 147 12 chr6 140287181 140287501 -42127741 + MLT1G1 LTR MaLR 233 595 0 920 152 126 4 chr6 140287950 140288180 -42127062 - MER58 DNA MER1_type 0 2420 2163 334 253 48 0 chr6 140288177 140288260 -42126982 - MER58 DNA MER1_type -126 89 3 * 1070 231 112 13 chr6 140288306 140288691 -42126551 + LTR40c LTR ERVL 38 460 -5 1849 214 49 7 chr6 140289204 140289634 -42125608 - MLT1C LTR MaLR 0 467 20 252 116 29 14 chr6 140290074 140290143 -42125099 + T-rich Low_complexity Low_complexity 1 70 0 980 177 35 105 chr6 140290205 140290807 -42124435 + MER4C LTR ERV1 1 462 -3 783 232 106 53 chr6 140290829 140291433 -42123809 - MER21B LTR ERV1 -154 709 20 276 182 0 18 chr6 140291433 140291488 -42123754 + Tigger5 DNA MER2_type 1 54 -2269 * 315 257 0 14 chr6 140291457 140291531 -42123711 + Tigger5 DNA MER2_type 2251 2323 0 1889 96 191 3 chr6 140291965 140292300 -42122942 + MSTA LTR MaLR 1 398 -30 1998 153 3 6 chr6 140292310 140292623 -42122619 - AluJb SINE Alu 0 312 1 2090 128 0 0 chr6 140292631 140292920 -42122322 - AluSx SINE Alu -23 289 1 280 98 0 0 chr6 140292920 140292961 -42122281 + MSTA LTR MaLR 388 428 0 970 128 28 146 chr6 140343903 140344218 -42071024 - MLT1A1 LTR MaLR -100 274 1 1830 199 9 63 chr6 140344218 140344745 -42070497 - L1M4 LINE L1 -1298 4848 4350 182 240 20 0 chr6 140344951 140345001 -42070241 + L2 LINE L2 3262 3312 -1 196 336 173 0 chr6 140345194 140345304 -42069938 - MIR3 SINE MIR -19 189 61 1763 166 0 46 chr6 140345822 140346147 -42069095 - AluJb SINE Alu -2 310 1 1958 201 56 15 chr6 140346211 140346604 -42068638 - MER47B DNA MER2_type -9 409 1 1871 160 3 22 chr6 140347651 140347969 -42067273 + AluSx SINE Alu 1 312 0 253 234 109 78 chr6 140348184 140348312 -42066930 + L2 LINE L2 3182 3313 0 392 208 0 0 chr6 140348488 140348560 -42066682 + MER116 DNA Mariner 9 80 0 248 289 103 72 chr6 140348875 140349138 -42066104 + LTR67 LTR ERVL 185 455 -102 1297 139 0 5 chr6 140349183 140349370 -42065872 - AluJo SINE Alu -126 186 1 14348 158 24 10 chr6 140349370 140353562 -42061680 - L1 LINE L1 -979 6586 2329 2276 105 7 0 chr6 140353562 140353858 -42061384 - AluSx SINE Alu -14 298 1 14348 158 24 10 chr6 140353858 140353967 -42061275 - L1 LINE L1 -5236 2329 2223 299 320 68 9 chr6 140354501 140354720 -42060522 - L1MC/D LINE L1 -2035 5773 5542 671 252 32 38 chr6 140354727 140355041 -42060201 - L1MEc LINE L1 -5089 1307 996 2427 81 369 9 chr6 140355046 140355493 -42059749 - LTR14B LTR ERVK 0 608 1 1630 231 27 40 chr6 140355509 140355954 -42059288 - L1MEc LINE L1 -5434 962 524 314 277 48 0 chr6 140355950 140356033 -42059209 - L1MEc LINE L1 -6117 279 193 * 640 293 46 3 chr6 140356048 140356351 -42058891 - L1MEc LINE L1 -5886 510 169 469 239 44 0 chr6 140358565 140358678 -42056564 - L2 LINE L2 -4 3309 3192 3960 31 0 0 chr6 140358725 140359213 -42056029 - L1M LINE L1 -838 5308 4828 5044 28 2 0 chr6 140359214 140360043 -42055199 + L1PA3 LINE L1 5301 6166 0 213 57 0 29 chr6 140360043 140360078 -42055164 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 22 56 0 0 chr6 140360800 140360836 -42054406 + AT_rich Low_complexity Low_complexity 1 36 0 482 289 49 23 chr6 140361063 140361329 -42053913 - L1ME LINE L1 -326 5795 5523 376 235 74 19 chr6 140361476 140361638 -42053604 + L1ME LINE L1 5647 5817 -304 423 152 0 0 chr6 140364026 140364105 -42051137 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 220 288 15 15 chr6 140364290 140364356 -42050886 + MIR SINE MIR 81 146 -62 1660 149 6 67 chr6 140364613 140364929 -42050313 - AluJo SINE Alu -15 297 1 382 274 18 0 chr6 140365912 140366025 -42049217 + MER103 DNA DNA 4 118 -48 * 1066 238 87 28 chr6 140366014 140366337 -42048905 - MLT1I LTR MaLR -50 359 18 2426 80 0 0 chr6 140366545 140366844 -42048398 - AluY SINE Alu -12 299 1 24 0 0 0 chr6 140366951 140366975 -42048267 + AT_rich Low_complexity Low_complexity 1 24 0 2423 70 0 25 chr6 140368782 140369097 -42046145 + AluY SINE Alu 5 311 0 2211 157 8 0 chr6 140369122 140369485 -42045757 - MER47A DNA MER2_type 0 366 1 21 82 0 0 chr6 140372094 140372143 -42043099 + AT_rich Low_complexity Low_complexity 1 49 0 585 222 192 0 chr6 140372202 140372369 -42042873 + MIR SINE MIR 48 246 -16 202 302 85 9 chr6 140374206 140374312 -42040930 - L3b LINE CR1 -336 1247 1134 232 233 67 0 chr6 140375369 140375429 -42039813 - MIR SINE MIR -41 221 158 206 114 0 29 chr6 140375425 140375460 -42039782 - L2 LINE L2 -938 2376 2343 * 339 259 0 0 chr6 140375504 140375589 -42039653 + L1ME LINE L1 5725 5809 -312 2008 109 0 68 chr6 140376282 140376603 -42038639 + AluY SINE Alu 2 300 -11 32 26 0 0 chr6 140377112 140377151 -42038091 + AT_rich Low_complexity Low_complexity 1 39 0 13962 121 49 25 chr6 140377873 140379538 -42035704 + Tigger1 DNA MER2_type 1 1739 -679 2447 68 3 7 chr6 140379538 140379845 -42035397 + AluY SINE Alu 1 306 -5 13962 121 49 25 chr6 140379845 140380542 -42034700 + Tigger1 DNA MER2_type 1739 2418 0 2090 120 3 46 chr6 140382025 140382350 -42032892 - AluSx SINE Alu -1 311 1 296 264 83 109 chr6 140383253 140383518 -42031724 + MER102b DNA MER1_type 84 341 0 180 0 0 0 chr6 140384058 140384078 -42031164 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 311 68 23 0 chr6 140384499 140384543 -42030699 + MADE1 DNA Mariner 34 78 -2 803 83 133 0 chr6 140385816 140385936 -42029306 - AluJo SINE Alu -176 136 1 2646 210 100 8 chr6 140385971 140386599 -42028643 + Charlie1a DNA MER1_type 1 686 -769 195 42 0 0 chr6 140386634 140386658 -42028584 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1922 109 0 33 chr6 140386678 140386952 -42028290 - AluSq SINE Alu -48 265 1 464 213 47 47 chr6 140386984 140387134 -42028108 - L1ME3 LINE L1 -9 6153 6004 266 125 54 0 chr6 140387138 140387194 -42028048 + Charlie1a DNA MER1_type 694 752 -703 3863 132 18 5 chr6 140387194 140388006 -42027236 - L1PA16 LINE L1 -319 5847 5026 905 153 71 0 chr6 140388006 140388189 -42027053 + Charlie1a DNA MER1_type 825 1020 -435 409 162 0 117 chr6 140388186 140388297 -42026945 + Charlie1a DNA MER1_type 1343 1440 -15 * 503 248 23 0 chr6 140388917 140389046 -42026196 + MER94 DNA DNA 3 134 0 1536 110 148 11 chr6 140389840 140390103 -42025139 + AluSg SINE Alu 1 299 -11 45 0 0 0 chr6 140390191 140390236 -42025006 + AT_rich Low_complexity Low_complexity 1 45 0 520 276 91 41 chr6 140390583 140390826 -42024416 + MIR SINE MIR 8 262 0 486 322 85 49 chr6 140391499 140391828 -42023414 - L2 LINE L2 -4 3268 2928 226 100 0 0 chr6 140392138 140392178 -42023064 - L1P4 LINE L1 -727 5436 5397 23 0 0 0 chr6 140392178 140392201 -42023041 + AT_rich Low_complexity Low_complexity 1 23 0 43703 43 1 3 chr6 140392201 140398362 -42016880 - L1PA4 LINE L1 -1 6154 3 413 358 31 47 chr6 140398365 140398809 -42016433 - L2 LINE L2 -540 2774 2338 459 0 0 0 chr6 140398872 140398923 -42016319 + (TG)n Simple_repeat Simple_repeat 2 52 0 30 0 0 0 chr6 140399374 140399404 -42015838 + AT_rich Low_complexity Low_complexity 1 30 0 315 187 107 0 chr6 140399599 140399674 -42015568 + MLT1L LTR MaLR 170 252 -363 442 304 81 8 chr6 140399903 140400163 -42015079 + MLT1L LTR MaLR 337 615 0 1182 120 6 0 chr6 140402126 140402293 -42012949 - AluSg/x SINE Alu -10 302 135 250 30 0 0 chr6 140402327 140402360 -42012882 - AluYb8 SINE Alu -176 132 100 216 0 0 0 chr6 140402977 140403001 -42012241 + (TA)n Simple_repeat Simple_repeat 2 25 0 494 310 118 0 chr6 140403806 140404009 -42011233 + MIR SINE MIR 34 260 -2 429 20 0 0 chr6 140404147 140404197 -42011045 + (TA)n Simple_repeat Simple_repeat 2 51 0 2294 105 13 0 chr6 140404198 140404502 -42010740 - AluSg SINE Alu -2 308 1 1765 164 3 33 chr6 140404505 140404809 -42010433 - AluJo SINE Alu -14 298 4 191 302 115 42 chr6 140405148 140405244 -42009998 - MIR SINE MIR -69 139 37 390 300 67 33 chr6 140405408 140405558 -42009684 - MIR3 SINE MIR -2 206 52 3817 115 55 5 chr6 140410215 140410536 -42004706 - L1MA4 LINE L1 -11 6289 5986 336 48 0 0 chr6 140410536 140410578 -42004664 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 3817 115 55 5 chr6 140410578 140410892 -42004350 - L1MA4 LINE L1 -314 5986 5622 365 217 80 109 chr6 140411476 140411651 -42003591 + L3 LINE CR1 1402 1571 -6 180 283 82 94 chr6 140412012 140412171 -42003071 + L2 LINE L2 3111 3267 -5 404 263 36 7 chr6 140412506 140412643 -42002599 + MIR3 SINE MIR 17 157 -51 219 274 0 16 chr6 140412730 140412792 -42002450 + CT-rich Low_complexity Low_complexity 3 63 0 213 250 0 0 chr6 140412793 140412833 -42002409 - L2 LINE L2 -19 3294 3255 252 0 0 0 chr6 140413591 140413619 -42001623 + (TTA)n Simple_repeat Simple_repeat 1 28 0 673 149 0 0 chr6 140413627 140413721 -42001521 - AluJ/FLAM SINE Alu -217 95 2 23 54 0 0 chr6 140413769 140413806 -42001436 + AT_rich Low_complexity Low_complexity 1 37 0 208 225 50 0 chr6 140414021 140414061 -42001181 + L2 LINE L2 3214 3255 -17 328 220 0 0 chr6 140414135 140414185 -42001057 + FRAM/FAM SINE Alu 1 41 -125 627 115 23 0 chr6 140414185 140414272 -42000970 + AluJ/FRAM SINE Alu 216 304 -8 552 222 136 34 chr6 140414600 140414776 -42000466 + MLT1K LTR MaLR 356 549 -39 695 253 97 22 chr6 140416158 140416427 -41998815 + L3 LINE CR1 1054 1342 -235 7023 82 4 0 chr6 140416678 140417716 -41997526 - L1PA10 LINE L1 -1 6167 5123 2203 99 3 38 chr6 140417797 140418111 -41997131 + AluSp SINE Alu 1 303 -10 722 253 129 9 chr6 140418690 140419296 -41995946 - LTR50 LTR ERVL 0 795 1 30 0 0 0 chr6 140419484 140419514 -41995728 + AT_rich Low_complexity Low_complexity 1 30 0 347 317 10 10 chr6 140420452 140420553 -41994689 + MER91B DNA MER1_type 90 190 0 2925 134 24 7 chr6 140421538 140421957 -41993285 - MSTB LTR MaLR 0 426 1 517 285 32 68 chr6 140421966 140422018 -41993224 - MIR SINE MIR -14 248 196 2046 122 0 0 chr6 140422018 140422297 -41992945 - AluSx SINE Alu -13 299 21 517 285 32 68 chr6 140422297 140422465 -41992777 - MIR SINE MIR -66 196 36 237 346 140 7 chr6 140422581 140422717 -41992525 + MIR SINE MIR 2 155 -107 237 33 0 0 chr6 140423563 140423593 -41991649 + (TTG)n Simple_repeat Simple_repeat 2 31 0 36 40 0 0 chr6 140423996 140424046 -41991196 + AT_rich Low_complexity Low_complexity 1 50 0 330 306 61 103 chr6 140424564 140424875 -41990367 + L2 LINE L2 2974 3271 -1 225 154 0 0 chr6 140424881 140424920 -41990322 + GA-rich Low_complexity Low_complexity 1 39 0 276 262 117 48 chr6 140425187 140425332 -41989910 + MIR SINE MIR 66 220 -42 1896 113 53 21 chr6 140425947 140426230 -41989012 - AluSx SINE Alu -20 292 1 3650 228 39 10 chr6 140426967 140428438 -41986804 - L1ME1 LINE L1 -2 6233 4718 470 136 37 37 chr6 140428438 140428519 -41986723 - AluJ/FRAM SINE Alu -18 294 214 3600 249 61 58 chr6 140428982 140430818 -41984424 - L1ME1 LINE L1 -2726 3489 1607 620 75 0 0 chr6 140430818 140430898 -41984344 - Alu SINE Alu -8 301 222 3600 249 61 58 chr6 140430898 140431250 -41983992 - L1ME1 LINE L1 -4608 1607 1258 872 161 0 0 chr6 140431395 140431519 -41983723 - FLAM_A SINE Alu -9 124 1 264 344 124 56 chr6 140431601 140432028 -41983214 + L2 LINE L2 2817 3272 0 410 303 128 0 chr6 140432086 140432274 -41982968 - MIR SINE MIR 0 262 51 21 36 0 0 chr6 140434883 140434911 -41980331 + AT_rich Low_complexity Low_complexity 1 28 0 2582 117 117 5 chr6 140435348 140435732 -41979510 - MSTA LTR MaLR -1 427 1 2382 84 7 0 chr6 140436153 140436449 -41978793 - AluSc SINE Alu -11 298 1 186 256 0 0 chr6 140436580 140436619 -41978623 - MIR3 SINE MIR -49 159 121 21 57 0 0 chr6 140439241 140439276 -41975966 + AT_rich Low_complexity Low_complexity 1 35 0 361 278 107 18 chr6 140441178 140441347 -41973895 - MIR SINE MIR -27 235 52 23 0 0 0 chr6 140441635 140441658 -41973584 + AT_rich Low_complexity Low_complexity 1 23 0 335 333 67 12 chr6 140441834 140441999 -41973243 + MIR3 SINE MIR 3 176 -32 39 80 0 0 chr6 140442422 140442510 -41972732 + AT_rich Low_complexity Low_complexity 1 88 0 1795 158 14 17 chr6 140443612 140443909 -41971333 - AluJo SINE Alu -16 296 1 1225 261 120 81 chr6 140444363 140444896 -41970346 + LTR67 LTR ERVL 2 555 -2 472 295 53 24 chr6 140444917 140445124 -41970118 - MER20 DNA MER1_type -4 215 3 1624 87 49 91 chr6 140445588 140445875 -41969367 - Tigger7 DNA MER2_type 0 2491 2217 352 140 0 0 chr6 140445925 140445975 -41969267 + Alu SINE Alu 1 50 -252 2362 90 0 0 chr6 140445975 140446276 -41968966 + AluSx SINE Alu 11 311 -1 264 233 0 14 chr6 140446473 140446546 -41968696 + MER72 LTR ERV1 410 481 -241 616 155 93 62 chr6 140446619 140446780 -41968462 + LTR45 LTR ERV1 324 525 0 1085 167 50 5 chr6 140447247 140447445 -41967797 + MER2 DNA MER2_type 1 207 -138 325 247 38 87 chr6 140447568 140447676 -41967566 + MLT1H LTR MaLR 1 66 -343 1424 206 4 4 chr6 140447676 140447914 -41967328 - MER8 DNA MER2_type 0 239 2 325 247 38 87 chr6 140447914 140447988 -41967254 + MLT1H LTR MaLR 66 142 -267 198 0 0 0 chr6 140448215 140448237 -41967005 + (A)n Simple_repeat Simple_repeat 1 22 0 329 237 105 18 chr6 140448345 140448459 -41966783 + L1ME4a LINE L1 5991 6114 -7 180 300 80 0 chr6 140448580 140448630 -41966612 - L2 LINE L2 -18 3254 3201 2509 216 17 42 chr6 140449089 140449690 -41965552 + MER67B LTR ERV1 1 586 -75 1558 217 43 36 chr6 140449701 140450143 -41965099 - MER39 LTR ERV1 0 707 263 3108 78 69 38 chr6 140450642 140450853 -41964389 + MER4C LTR ERV1 1 204 -261 2429 84 0 0 chr6 140450853 140451163 -41964079 - AluSx SINE Alu -2 310 1 3108 78 69 38 chr6 140451163 140451402 -41963840 + MER4C LTR ERV1 204 465 0 899 147 15 40 chr6 140452041 140452239 -41963003 + MER61A LTR ERV1 1 193 -150 3558 64 2 7 chr6 140452239 140452689 -41962553 + LTR7 LTR ERV1 1 448 -2 19704 95 17 38 chr6 140452691 140455749 -41959493 + HERVH LTR ERV1 1 2995 -4718 958 133 7 0 chr6 140455728 140455878 -41959364 + HERVH LTR ERV1 3140 3290 -4423 * 3302 118 6 4 chr6 140455880 140456370 -41958872 + HERVH LTR ERV1 3503 3993 -3720 4466 135 3 1 chr6 140456372 140457033 -41958209 + HERVH LTR ERV1 4488 5149 -2564 1367 129 18 5 chr6 140457034 140457251 -41957991 + HERVH LTR ERV1 5600 5819 -1894 * 2523 87 45 13 chr6 140457249 140457629 -41957613 + HERVH LTR ERV1 7322 7713 0 3609 62 2 7 chr6 140457629 140458079 -41957163 + LTR7 LTR ERV1 1 448 -2 951 144 20 7 chr6 140458081 140458234 -41957008 + MER61A LTR ERV1 189 343 0 669 268 81 77 chr6 140458423 140458498 -41956744 + L1MC/D LINE L1 5318 5391 -2417 2189 105 24 0 chr6 140458498 140458794 -41956448 + AluSg SINE Alu 1 303 -7 669 268 81 77 chr6 140458794 140458950 -41956292 + L1MC/D LINE L1 5391 5545 -2263 3240 84 18 38 chr6 140458950 140459335 -41955907 + MLT2A1 LTR ERVL 1 377 -67 2284 96 0 3 chr6 140459335 140459627 -41955615 - AluSq SINE Alu -22 291 1 3240 84 18 38 chr6 140459627 140459694 -41955548 + MLT2A1 LTR ERVL 377 444 0 669 268 81 77 chr6 140459694 140459965 -41955277 + L1MC/D LINE L1 5545 5823 -1985 2350 126 118 21 chr6 140460529 140460918 -41954324 + MSTA LTR MaLR 2 428 0 866 281 15 18 chr6 140461833 140462107 -41953135 - L1ME1 LINE L1 -31 6135 5863 22 35 0 0 chr6 140462421 140462450 -41952792 + AT_rich Low_complexity Low_complexity 1 29 0 258 105 0 0 chr6 140462882 140462920 -41952322 + (CA)n Simple_repeat Simple_repeat 2 39 0 1822 102 37 98 chr6 140463400 140463725 -41951517 + AluSx SINE Alu 1 305 -7 1793 149 32 4 chr6 140464091 140464372 -41950870 - AluSx SINE Alu -23 289 1 2488 89 0 3 chr6 140464911 140465225 -41950017 + AluSp SINE Alu 1 313 0 2445 278 123 38 chr6 140465240 140465789 -41949453 + L1MEc LINE L1 63 564 -5832 1677 129 98 39 chr6 140465789 140466075 -41949167 - AluSx SINE Alu -9 303 1 2445 278 123 38 chr6 140466075 140467152 -41948090 + L1MEc LINE L1 564 1828 -4568 5478 239 79 25 chr6 140467152 140469367 -41945875 + L1MEc LINE L1 2238 4659 -1556 249 327 154 19 chr6 140469894 140470050 -41945192 + MER5A DNA MER1_type 7 183 -6 4447 190 35 37 chr6 140470320 140470449 -41944793 - L1PA14 LINE L1 0 6161 6033 2371 63 40 7 chr6 140470449 140470750 -41944492 - AluY SINE Alu 0 311 1 4447 190 35 37 chr6 140470750 140472382 -41942860 - L1PA14 LINE L1 -128 6033 4412 1471 144 12 20 chr6 140472858 140473140 -41942102 - AluSg/x SINE Alu 0 344 65 237 186 200 0 chr6 140473463 140473533 -41941709 - L2 LINE L2 -4 3309 3226 317 316 86 39 chr6 140473697 140473931 -41941311 - L2 LINE L2 -1339 1975 1731 1750 171 40 20 chr6 140473937 140474289 -41940953 + MLT1A1 LTR MaLR 7 365 0 216 252 203 8 chr6 140474322 140474445 -41940797 - L2 LINE L2 -1649 1665 1519 22 0 0 0 chr6 140475511 140475533 -41939709 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 140475893 140475914 -41939328 + AT_rich Low_complexity Low_complexity 1 21 0 806 152 5 2 chr6 140475977 140476112 -41939130 + L1PA16 LINE L1 5632 5768 -398 2334 125 15 3 chr6 140476113 140476448 -41938794 + L1PA16 LINE L1 5815 6153 -13 1727 161 21 11 chr6 140476448 140476767 -41938475 + AluSx SINE Alu 1 322 0 285 316 65 66 chr6 140476929 140477657 -41937585 + L1M4 LINE L1 3606 4332 -1814 2137 113 7 10 chr6 140477884 140478185 -41937057 - AluSx SINE Alu -12 300 1 310 216 8 104 chr6 140478384 140478518 -41936724 + L1MC5 LINE L1 7815 7935 -26 349 237 0 0 chr6 140479525 140479601 -41935641 - MIR SINE MIR -26 236 161 353 75 19 0 chr6 140479809 140479862 -41935380 + (TG)n Simple_repeat Simple_repeat 1 54 0 769 212 47 5 chr6 140479864 140480057 -41935185 + LTR37B LTR ERV1 217 417 -51 3727 53 0 7 chr6 140480178 140480629 -41934613 + LTR7 LTR ERV1 1 448 -2 20345 96 64 32 chr6 140480631 140483821 -41931421 + HERVH LTR ERV1 1 3290 -4423 3347 115 4 4 chr6 140483820 140484314 -41930928 + HERVH LTR ERV1 3500 3993 -3720 * 4329 147 1 1 chr6 140484317 140484978 -41930264 + HERVH LTR ERV1 4489 5149 -2564 1409 129 18 5 chr6 140484979 140485196 -41930046 + HERVH LTR ERV1 5600 5819 -1894 * 2550 82 45 3 chr6 140485194 140485570 -41929672 + HERVH LTR ERV1 7322 7713 0 3687 56 2 7 chr6 140485570 140486020 -41929222 + LTR7 LTR ERV1 1 448 -2 336 288 97 31 chr6 140486022 140486248 -41928994 - L1ME LINE L1 -368 5753 5513 23 92 0 0 chr6 140486701 140486766 -41928476 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr6 140486994 140487022 -41928220 + AT_rich Low_complexity Low_complexity 1 28 0 205 237 0 18 chr6 140487280 140487394 -41927848 + (TA)n Simple_repeat Simple_repeat 2 113 0 7032 99 10 6 chr6 140488175 140489162 -41926080 + MER41B-int LTR ERV1 4956 5946 0 3594 121 13 9 chr6 140489163 140489707 -41925535 + MER41B LTR ERV1 2 547 -88 1655 154 39 42 chr6 140490139 140490450 -41924792 + MER2 DNA MER2_type 36 345 0 1642 179 15 0 chr6 140490998 140491271 -41923971 - AluJo SINE Alu -25 287 11 436 301 140 6 chr6 140492128 140492361 -41922881 - MIR SINE MIR 0 262 1 883 293 66 46 chr6 140494665 140495282 -41919960 - MLT1G LTR MaLR -2 588 1 3686 62 0 7 chr6 140495682 140496133 -41919109 + LTR7 LTR ERV1 1 448 -2 20113 87 21 31 chr6 140496135 140499153 -41916089 + HERVH LTR ERV1 1 2987 -4726 870 160 7 0 chr6 140499147 140499297 -41915945 + HERVH LTR ERV1 3140 3290 -4423 * 3383 121 4 6 chr6 140499287 140499790 -41915452 + HERVH LTR ERV1 3492 3993 -3720 3038 141 12 2 chr6 140499792 140500396 -41914846 + HERVH LTR ERV1 4488 5142 -2571 2631 97 44 33 chr6 140500404 140500996 -41914246 + HERVH LTR ERV1 5600 7713 0 3604 67 0 7 chr6 140500996 140501447 -41913795 + LTR7 LTR ERV1 1 448 -2 241 211 106 25 chr6 140501576 140501754 -41913488 + L1 LINE L1 5152 5345 -801 1568 200 77 40 chr6 140501777 140502386 -41912856 - MER39 LTR ERV1 0 707 5 240 208 153 0 chr6 140502394 140502466 -41912776 + L1MC4a LINE L1 5373 5455 -715 2185 119 0 0 chr6 140502515 140502800 -41912442 - AluSx SINE Alu -27 285 1 1876 172 70 56 chr6 140502823 140503305 -41911937 + MER34B LTR ERV1 13 501 -64 401 311 117 52 chr6 140503353 140503864 -41911378 + L1MC4a LINE L1 5483 5822 -299 2170 130 0 0 chr6 140503913 140504213 -41911029 - AluSx SINE Alu -12 300 1 23 0 0 0 chr6 140504968 140504991 -41910251 + AT_rich Low_complexity Low_complexity 1 23 0 304 239 23 34 chr6 140506517 140506605 -41908637 - MER5A DNA MER1_type -93 96 10 1094 168 0 6 chr6 140506654 140506827 -41908415 + FRAM SINE Alu 1 172 -4 198 0 0 0 chr6 140507148 140507170 -41908072 + (A)n Simple_repeat Simple_repeat 1 22 0 260 264 141 25 chr6 140508309 140508430 -41906812 + MIR SINE MIR 63 197 -65 410 128 117 32 chr6 140508465 140508559 -41906683 + MER53 DNA DNA 84 185 -4 222 254 34 34 chr6 140508590 140508649 -41906593 - L2 LINE L2 -18 3254 3196 183 340 0 0 chr6 140508700 140508753 -41906489 - MIR SINE MIR -161 101 49 424 244 9 35 chr6 140509235 140509350 -41905892 - MIR SINE MIR -12 250 139 2320 227 15 72 chr6 140509389 140510053 -41905189 + MLT1E2 LTR MaLR 1 626 0 639 253 77 12 chr6 140510329 140510499 -41904743 + MIR SINE MIR 16 196 -66 242 298 0 0 chr6 140510599 140510683 -41904559 + L1PA8A LINE L1 5380 5463 -668 1145 230 109 0 chr6 140510833 140511107 -41904135 - LTR16C LTR ERVL 0 491 188 265 333 74 44 chr6 140511194 140511464 -41903778 + L1ME LINE L1 5608 5885 -277 210 143 0 0 chr6 140511512 140511561 -41903681 + (CA)n Simple_repeat Simple_repeat 1 49 0 1681 183 7 7 chr6 140513451 140513741 -41901501 - AluJo SINE Alu -21 291 2 693 195 59 0 chr6 140513752 140513870 -41901372 - FLAM_C SINE Alu -17 126 2 2537 47 0 3 chr6 140514066 140514366 -41900876 + AluY SINE Alu 1 299 -12 3911 223 42 9 chr6 140514897 140515753 -41899489 + L1MDa LINE L1 20 903 -5637 376 96 0 110 chr6 140515753 140515826 -41899416 - MLT2B1 LTR ERVL 0 520 456 460 155 6 40 chr6 140515876 140516050 -41899192 + (TA)n Simple_repeat Simple_repeat 1 168 0 2608 164 20 16 chr6 140516140 140516584 -41898658 - MLT2B3 LTR ERVL -34 520 75 412 156 0 6 chr6 140516678 140516752 -41898490 - MLT2B3 LTR ERVL -450 70 1 954 272 9 0 chr6 140516752 140516984 -41898258 + L1MDa LINE L1 899 1132 -5408 1479 192 48 13 chr6 140516985 140517298 -41897944 - MLT1B LTR MaLR 0 390 67 888 154 6 26 chr6 140517289 140517445 -41897797 - MLT1B LTR MaLR -237 153 1 * 2664 175 24 29 chr6 140517445 140518038 -41897204 + L1MDa LINE L1 1129 1718 -4822 469 303 16 43 chr6 140518092 140518280 -41896962 + MIR SINE MIR 10 192 -70 1334 222 8 0 chr6 140518288 140518554 -41896688 - MLT2C2 LTR ERVL -196 268 1 28 29 0 0 chr6 140518999 140519034 -41896208 + AT_rich Low_complexity Low_complexity 1 35 0 251 318 141 29 chr6 140519467 140519637 -41895605 - MIR3 SINE MIR -3 205 17 1934 117 18 7 chr6 140519740 140520046 -41895196 + AluSx SINE Alu 1 309 0 441 258 96 36 chr6 140520220 140520387 -41894855 - L2 LINE L2 0 3313 3137 226 180 40 20 chr6 140520745 140520795 -41894447 - MLT1K LTR MaLR -353 235 185 368 267 0 30 chr6 140521491 140521592 -41893650 - MIR SINE MIR -60 202 105 2058 117 4 0 chr6 140521657 140521974 -41893268 + AluSx SINE Alu 1 318 0 1519 78 0 5 chr6 140522238 140522430 -41892812 + AluSg/x SINE Alu 104 294 -16 787 194 112 73 chr6 140523456 140523662 -41891580 - MER20 DNA MER1_type -2 217 4 1625 174 50 23 chr6 140523842 140524141 -41891101 + AluJo SINE Alu 1 307 -5 2002 115 0 34 chr6 140524577 140524897 -41890345 + AluSq SINE Alu 1 310 0 209 354 0 13 chr6 140524897 140524976 -41890266 + MER5A DNA MER1_type 67 144 -45 530 326 60 67 chr6 140526032 140526611 -41888631 - L2 LINE L2 -1 3271 2693 1975 205 109 16 chr6 140526611 140527104 -41888138 - MER34 LTR ERV1 -3 539 1 530 326 60 67 chr6 140527104 140527117 -41888125 - L2 LINE L2 -579 2693 2681 1073 216 75 58 chr6 140527203 140527714 -41887528 + MER34B LTR ERV1 13 565 0 1447 201 58 40 chr6 140527965 140528344 -41886898 + MLT1C LTR MaLR 79 464 -3 1294 129 5 14 chr6 140529056 140529265 -41885977 - L1MA2 LINE L1 0 6304 6098 1001 264 0 9 chr6 140530009 140530225 -41885017 - MIR SINE MIR -38 224 11 2011 119 0 53 chr6 140530897 140531216 -41884026 + AluSx SINE Alu 1 302 -10 600 191 55 0 chr6 140531297 140531407 -41883835 - MER69A DNA AcHobo -9 168 53 223 348 12 99 chr6 140532596 140532757 -41882485 + L2 LINE L2 3118 3264 -8 319 264 116 66 chr6 140532845 140533087 -41882155 + L2 LINE L2 3055 3308 -5 961 152 33 16 chr6 140533152 140533336 -41881906 + MER53 DNA DNA 3 189 0 2309 111 20 0 chr6 140533361 140533667 -41881575 - AluSq SINE Alu -1 312 1 1499 247 70 30 chr6 140534368 140534895 -41880347 - MLT1E2 LTR MaLR -78 548 1 249 33 0 0 chr6 140534976 140535006 -41880236 + (TG)n Simple_repeat Simple_repeat 1 30 0 1709 189 124 56 chr6 140535163 140535593 -41879649 + MLT2B1 LTR ERVL 1 400 -120 2003 144 30 0 chr6 140535593 140535892 -41879350 - AluSx SINE Alu -3 309 2 779 57 43 7 chr6 140535892 140536032 -41879210 + (TCTA)n Simple_repeat Simple_repeat 3 147 0 1709 189 124 56 chr6 140536032 140536066 -41879176 + MLT2B1 LTR ERVL 399 498 -22 3309 124 48 25 chr6 140536067 140536574 -41878668 + L1MB2 LINE L1 5599 6122 -49 923 181 44 19 chr6 140536574 140536734 -41878508 + FAM SINE Alu 1 164 -11 3309 124 48 25 chr6 140536734 140536784 -41878458 + L1MB2 LINE L1 6122 6169 -2 2461 139 18 3 chr6 140537497 140537877 -41877365 + MLT1B LTR MaLR 5 390 0 288 53 0 0 chr6 140538378 140538416 -41876826 + (TG)n Simple_repeat Simple_repeat 2 39 0 240 100 0 0 chr6 140540282 140540322 -41874920 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 737 41 10 0 chr6 140540548 140540645 -41874597 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 1320 232 108 42 chr6 140540689 140541115 -41874127 - LTR16A1 LTR ERVL -3 454 1 29 0 0 0 chr6 140541756 140541785 -41873457 + AT_rich Low_complexity Low_complexity 1 29 0 1260 171 51 94 chr6 140541915 140541959 -41873283 - LTR29 LTR ERV1 0 608 564 3724 109 48 66 chr6 140541959 140542301 -41872941 - MER4B LTR ERV1 0 610 263 2260 54 11 4 chr6 140542301 140542578 -41872664 + AluY SINE Alu 1 279 -32 450 0 0 0 chr6 140542580 140542630 -41872612 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 3724 109 48 66 chr6 140542630 140542905 -41872337 - MER4B LTR ERV1 -348 262 1 1260 171 51 94 chr6 140542905 140543218 -41872024 - LTR29 LTR ERV1 -44 564 207 3008 199 79 58 chr6 140543218 140543397 -41871845 - MER50 LTR ERV1 0 734 560 2165 115 16 0 chr6 140543397 140543701 -41871541 + AluSx SINE Alu 1 309 -3 3008 199 79 58 chr6 140543701 140544240 -41871002 - MER50 LTR ERV1 -174 560 1 1260 171 51 94 chr6 140544240 140544439 -41870803 - LTR29 LTR ERV1 -401 207 1 203 330 80 30 chr6 140545717 140545817 -41869425 + L2 LINE L2 3125 3229 -43 283 269 32 11 chr6 140546145 140546238 -41869004 - L2 LINE L2 0 3313 3219 185 267 35 23 chr6 140546322 140546408 -41868834 - L2 LINE L2 -1006 2308 2222 829 259 91 68 chr6 140546594 140546988 -41868254 + MLT1I LTR MaLR 6 408 -1 1755 179 3 0 chr6 140547079 140547370 -41867872 + AluSq SINE Alu 1 292 -21 654 261 148 19 chr6 140547425 140547689 -41867553 - MLT1J LTR MaLR -213 298 1 1472 314 100 25 chr6 140547691 140548598 -41866644 - L2 LINE L2 -395 2919 1945 4951 162 30 10 chr6 140549199 140550223 -41865019 + L1MB7 LINE L1 5120 6168 -16 6488 209 61 42 chr6 140550239 140552285 -41862957 - L1M4c LINE L1 -4550 2096 14 1745 271 14 14 chr6 140552299 140552879 -41862363 + L1ME3A LINE L1 2919 3498 -2648 3715 214 16 29 chr6 140552903 140553933 -41861309 + L1ME3A LINE L1 4471 5486 -751 412 307 46 8 chr6 140553962 140554200 -41861042 + L1ME3A LINE L1 5685 5931 -239 1652 188 10 17 chr6 140554403 140554691 -41860551 + AluJo SINE Alu 1 286 -26 321 26 0 0 chr6 140554691 140554729 -41860513 + (CA)n Simple_repeat Simple_repeat 2 39 0 2123 123 3 0 chr6 140555762 140556071 -41859171 + AluSq SINE Alu 1 310 -3 2834 122 26 5 chr6 140556356 140556781 -41858461 - MER57B LTR ERV1 0 434 1 389 287 56 0 chr6 140556799 140556942 -41858300 - MIR SINE MIR -8 254 104 2004 173 91 126 chr6 140557098 140557822 -41857420 + LTR8A LTR ERV1 1 699 -28 366 232 194 45 chr6 140558748 140559037 -41856205 + L1ME4a LINE L1 5600 5931 -190 227 77 0 26 chr6 140559178 140559217 -41856025 + (GA)n Simple_repeat Simple_repeat 1 38 0 3441 31 13 0 chr6 140559398 140559782 -41855460 + L1PA3 LINE L1 5765 6153 -2 25 0 0 0 chr6 140559782 140559807 -41855435 + AT_rich Low_complexity Low_complexity 1 25 0 1477 173 104 69 chr6 140559807 140560240 -41855002 + LTR7 LTR ERV1 1 448 -2 16029 102 18 18 chr6 140560242 140563099 -41852143 + HERVH LTR ERV1 1 2987 -4726 860 155 20 0 chr6 140563093 140563241 -41852001 + HERVH LTR ERV1 3140 3290 -4423 * 3323 123 4 4 chr6 140563240 140563734 -41851508 + HERVH LTR ERV1 3500 3993 -3720 4353 149 0 1 chr6 140563737 140564399 -41850843 + HERVH LTR ERV1 4489 5149 -2564 1306 115 23 9 chr6 140564400 140564617 -41850625 + HERVH LTR ERV1 5600 5819 -1894 2251 92 45 16 chr6 140564617 140564996 -41850246 + HERVH LTR ERV1 7324 7713 0 1360 166 110 65 chr6 140564996 140565425 -41849817 + LTR7 LTR ERV1 1 448 -2 315 0 0 0 chr6 140566474 140566509 -41848733 + (CA)n Simple_repeat Simple_repeat 2 36 0 186 241 60 72 chr6 140566738 140566821 -41848421 + MIR3 SINE MIR 120 201 -7 830 162 0 40 chr6 140566944 140567092 -41848150 - FLAM_C SINE Alu -1 142 1 355 229 198 0 chr6 140567122 140567218 -41848024 + MIR SINE MIR 66 180 -82 2433 108 27 16 chr6 140567491 140567862 -41847380 + THE1C LTR MaLR 1 375 0 277 250 29 10 chr6 140567875 140567972 -41847270 + MIR SINE MIR 77 128 -80 476 294 79 31 chr6 140567976 140568431 -41846811 + L1ME LINE L1 5336 5812 -358 21 0 0 0 chr6 140568447 140568468 -41846774 + AT_rich Low_complexity Low_complexity 1 21 0 2305 102 0 3 chr6 140568963 140569267 -41845975 + AluSg1 SINE Alu 2 304 -5 1188 163 86 33 chr6 140569308 140569469 -41845773 + L1MA9 LINE L1 5986 6137 -175 192 40 0 0 chr6 140569469 140569494 -41845748 + (CA)n Simple_repeat Simple_repeat 1 25 0 1188 163 86 33 chr6 140569494 140569633 -41845609 + L1MA9 LINE L1 6137 6302 -10 22 0 0 0 chr6 140570751 140570773 -41844469 + AT_rich Low_complexity Low_complexity 1 22 0 296 311 36 32 chr6 140571136 140571384 -41843858 + L1ME4a LINE L1 5383 5631 -490 313 326 37 54 chr6 140571387 140571629 -41843613 + L1ME4a LINE L1 5675 5912 -209 2241 185 165 17 chr6 140571709 140572292 -41842950 + LTR65 LTR ERV1 1 669 0 320 262 74 0 chr6 140572456 140572578 -41842664 + L1ME4a LINE L1 5986 6116 -5 2142 108 7 3 chr6 140572689 140572994 -41842248 - AluSg SINE Alu -4 306 1 3234 165 44 8 chr6 140573455 140574097 -41841145 - L1MB4 LINE L1 0 6180 5516 357 130 0 0 chr6 140575007 140575061 -41840181 - MSTA LTR MaLR 0 428 375 1493 80 0 52 chr6 140575062 140575275 -41839967 - AluSg1 SINE Alu -2 308 107 761 184 234 87 chr6 140575275 140575699 -41839543 - LTR21A LTR ERV1 -19 486 1 897 72 0 0 chr6 140575699 140575810 -41839432 - AluSg1 SINE Alu -198 111 1 1782 118 156 9 chr6 140575810 140576149 -41839093 - MSTA LTR MaLR -39 389 1 242 275 114 27 chr6 140576442 140576591 -41838651 + LTR33 LTR ERVL 358 519 -2 1588 172 59 51 chr6 140577166 140577538 -41837704 - MLT1B LTR MaLR -15 375 1 343 289 79 0 chr6 140577538 140577652 -41837590 + L1ME3A LINE L1 6033 6155 -15 759 111 0 0 chr6 140577660 140577768 -41837474 - AluSp/q SINE Alu -16 297 190 271 377 62 68 chr6 140578491 140578799 -41836443 - L2 LINE L2 -42 3230 2925 600 340 130 32 chr6 140579000 140579787 -41835455 - L2 LINE L2 -710 2604 1741 636 247 12 6 chr6 140579796 140579958 -41835284 + MLT1C LTR MaLR 305 467 0 252 326 8 15 chr6 140580011 140580143 -41835099 + CT-rich Low_complexity Low_complexity 4 134 0 231 36 0 0 chr6 140580151 140580179 -41835063 + (CA)n Simple_repeat Simple_repeat 2 29 0 244 338 63 14 chr6 140580285 140580427 -41834815 - L2 LINE L2 -244 3069 2921 213 205 26 103 chr6 140580496 140580574 -41834668 + L2 LINE L2 3209 3280 -33 914 152 0 0 chr6 140580602 140580740 -41834502 + FLAM_C SINE Alu 1 138 -5 457 294 65 48 chr6 140580748 140580979 -41834263 + MIR SINE MIR 28 262 0 1506 151 103 22 chr6 140582412 140582724 -41832518 - MER1B DNA MER1_type 0 337 1 200 258 136 0 chr6 140582897 140582963 -41832279 + MIR SINE MIR 81 155 -107 278 172 302 26 chr6 140583208 140583324 -41831918 + MER5B DNA MER1_type 3 150 -28 527 204 29 15 chr6 140583354 140583491 -41831751 + L1MC5 LINE L1 7786 7924 -37 210 227 27 53 chr6 140584971 140585046 -41830196 + L3b LINE CR1 1296 1368 -215 367 283 42 36 chr6 140585623 140585789 -41829453 + L1M4b LINE L1 1353 1519 -5340 247 225 66 126 chr6 140585931 140586082 -41829160 + L1ME3A LINE L1 5972 6113 -57 1598 156 60 21 chr6 140586501 140586784 -41828458 + AluJo SINE Alu 1 294 -18 369 0 0 0 chr6 140586784 140586825 -41828417 + (TA)n Simple_repeat Simple_repeat 1 41 0 194 196 39 59 chr6 140588054 140588105 -41827137 + L2 LINE L2 3223 3272 0 515 155 36 0 chr6 140589809 140589893 -41825349 - Tigger7 DNA MER2_type -1 2486 2400 1377 191 23 4 chr6 140589920 140590182 -41825060 - Tigger7 DNA MER2_type -466 267 1 2680 103 32 7 chr6 140590222 140590628 -41824614 + MSTA LTR MaLR 13 428 0 12798 211 23 9 chr6 140591593 140596835 -41818407 + L1PA16 LINE L1 800 6201 -22 317 216 117 9 chr6 140597199 140597310 -41817932 + L1 LINE L1 4187 4309 -1837 5215 183 28 30 chr6 140597313 140597770 -41817472 + HERVL74 LTR ERVL 1637 2094 -3591 2293 85 0 0 chr6 140597770 140598085 -41817157 + AluSc SINE Alu 1 315 0 5215 183 28 30 chr6 140598085 140599260 -41815982 + HERVL74 LTR ERVL 2094 3341 -2344 694 191 26 0 chr6 140599259 140599411 -41815831 + HERVL74 LTR ERVL 3496 3651 -2034 * 315 169 124 11 chr6 140599406 140599495 -41815747 + HERVL74 LTR ERVL 3919 4017 -1668 * 1686 160 129 6 chr6 140599489 140599846 -41815396 + HERVL74 LTR ERVL 4589 4989 -696 305 154 0 0 chr6 140599846 140599898 -41815344 - Alu SINE Alu -255 53 2 852 270 111 25 chr6 140600600 140601004 -41814238 + L2 LINE L2 2875 3313 0 7103 53 2 2 chr6 140601152 140602781 -41812461 + L1PA7 LINE L1 4525 6153 -1 22 0 0 0 chr6 140602900 140602922 -41812320 + AT_rich Low_complexity Low_complexity 1 22 0 631 176 154 81 chr6 140602954 140603303 -41811939 - MLT1C LTR MaLR -12 378 48 1166 208 113 28 chr6 140603686 140604013 -41811229 - MLT1A1 LTR MaLR -9 356 2 1701 193 90 25 chr6 140604195 140604630 -41810612 + MLT1C LTR MaLR 1 463 -4 294 191 32 0 chr6 140605309 140605372 -41809870 + Tigger8 DNA MER2_type 517 581 -85 405 0 0 0 chr6 140606291 140606336 -41808906 + (CA)n Simple_repeat Simple_repeat 2 46 0 207 270 71 48 chr6 140608418 140608544 -41806698 + MIR SINE MIR 85 213 -49 566 322 89 8 chr6 140608908 140609166 -41806076 - L3 LINE CR1 -216 1361 1083 1675 180 0 23 chr6 140609236 140609542 -41805700 + AluJo SINE Alu 1 299 -13 281 305 47 62 chr6 140609547 140609675 -41805567 - L2 LINE L2 -5 3308 3183 303 181 138 103 chr6 140609896 140610012 -41805230 - L2 LINE L2 -498 2816 2697 237 384 36 54 chr6 140610332 140610556 -41804686 - L2 LINE L2 -199 3073 2854 401 323 78 44 chr6 140610727 140611046 -41804196 - L2 LINE L2 -829 2485 2156 415 364 27 4 chr6 140611344 140611569 -41803673 - MLT1K LTR MaLR -204 384 155 255 342 9 9 chr6 140611569 140611683 -41803559 + MER5A DNA MER1_type 51 164 -25 212 369 31 31 chr6 140611587 140611717 -41803525 - MER5A DNA MER1_type -57 132 3 * 1404 138 48 21 chr6 140612408 140612699 -41802543 - L1MA9 LINE L1 -1 6311 6013 875 151 0 41 chr6 140613706 140613852 -41801390 + FLAM_C SINE Alu 1 140 -3 478 317 32 27 chr6 140614215 140614401 -41800841 + MIR SINE MIR 52 238 -24 315 0 0 0 chr6 140614891 140614926 -41800316 + (TG)n Simple_repeat Simple_repeat 2 36 0 1253 157 5 0 chr6 140614926 140615124 -41800118 - AluSg/x SINE Alu -24 288 90 21 0 0 0 chr6 140615318 140615339 -41799903 + AT_rich Low_complexity Low_complexity 1 21 0 472 113 0 0 chr6 140615351 140615413 -41799829 - FLAM SINE Alu -25 118 57 234 97 0 0 chr6 140615419 140615450 -41799792 - AluSg/x SINE Alu -216 86 56 564 139 0 0 chr6 140615455 140615541 -41799701 - AluSx SINE Alu -227 86 1 191 361 52 52 chr6 140615635 140615916 -41799326 + L2 LINE L2 2418 2701 -613 977 219 32 9 chr6 140615916 140616135 -41799107 - MER58A DNA MER1_type 0 224 1 191 361 52 52 chr6 140616135 140616158 -41799084 + L2 LINE L2 2700 2722 -592 2186 119 0 19 chr6 140616345 140616655 -41798587 + AluSx SINE Alu 1 304 -8 189 310 230 0 chr6 140616687 140616774 -41798468 + MIR SINE MIR 54 160 -102 324 0 0 0 chr6 140617154 140617190 -41798052 + (TC)n Simple_repeat Simple_repeat 2 37 0 299 25 25 0 chr6 140617189 140617229 -41798013 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 1071 232 102 12 chr6 140618280 140618681 -41796561 + L1MC4a LINE L1 2453 2889 -3257 300 219 49 49 chr6 140619989 140620071 -41795171 - MIR SINE MIR -84 178 97 293 265 86 17 chr6 140620185 140620302 -41794940 + MLT1L LTR MaLR 167 291 -324 25 0 0 0 chr6 140620687 140620712 -41794530 + AT_rich Low_complexity Low_complexity 1 25 0 1463 243 65 61 chr6 140620790 140620855 -41794387 + L1MC4a LINE L1 5315 5378 -2430 1515 199 21 21 chr6 140620855 140620919 -41794323 - AluJo SINE Alu -21 291 228 5205 152 23 42 chr6 140620919 140621906 -41793336 + LTR5 LTR ERVK 1 969 0 1515 199 21 21 chr6 140621906 140622132 -41793110 - AluJo SINE Alu -83 229 1 1463 243 65 61 chr6 140622132 140622208 -41793034 + L1MC4a LINE L1 5378 5452 -2356 2142 124 3 0 chr6 140622208 140622506 -41792736 + AluY SINE Alu 1 299 -12 1463 243 65 61 chr6 140622506 140623005 -41792237 + L1MC4a LINE L1 5452 5959 -1849 4464 120 28 3 chr6 140623590 140624317 -41790925 - L1MA5A LINE L1 -7 6290 5546 684 130 8 15 chr6 140624318 140624449 -41790793 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 1288 157 9 5 chr6 140624449 140624659 -41790583 - AluSg/x SINE Alu 0 312 102 846 84 0 14 chr6 140624668 140624810 -41790432 - L1P LINE L1 -2792 3354 3215 2480 149 5 2 chr6 140624911 140625339 -41789903 + L1MA6 LINE L1 5872 6300 0 2004 157 23 6 chr6 140626469 140626820 -41788422 + MLT1B LTR MaLR 22 378 -12 280 286 16 0 chr6 140628214 140628340 -41786902 + L1M4 LINE L1 3341 3468 -2678 414 134 0 0 chr6 140629147 140629214 -41786028 + (CA)n Simple_repeat Simple_repeat 2 68 0 461 282 17 0 chr6 140629267 140629384 -41785858 + MLT1G1 LTR MaLR 25 143 -452 545 211 8 0 chr6 140629394 140629517 -41785725 - L1MD3 LINE L1 -8 7987 7864 924 272 147 12 chr6 140629575 140629895 -41785347 + MLT1G1 LTR MaLR 233 595 0 962 177 101 5 chr6 140630343 140630656 -41784586 - MER58 DNA MER1_type 0 2420 1 1124 221 114 16 chr6 140630700 140631085 -41784157 + LTR40c LTR ERVL 38 460 -5 2116 200 45 5 chr6 140631600 140632049 -41783193 - MLT1C LTR MaLR 0 467 1 252 116 29 14 chr6 140632497 140632566 -41782676 + T-rich Low_complexity Low_complexity 1 70 0 998 176 35 109 chr6 140632628 140633234 -41782008 + MER4C LTR ERV1 1 462 -3 803 234 103 53 chr6 140633256 140633863 -41781379 - MER21B LTR ERV1 -154 709 20 262 200 0 18 chr6 140633863 140633918 -41781324 + Tigger5 DNA MER2_type 1 54 -2269 * 301 270 0 14 chr6 140633887 140633961 -41781281 + Tigger5 DNA MER2_type 2251 2323 0 1852 100 202 0 chr6 140634395 140634726 -41780516 + MSTA LTR MaLR 1 398 -30 2000 152 3 7 chr6 140634743 140635053 -41780189 - AluJb SINE Alu -3 309 1 2066 135 0 0 chr6 140635061 140635350 -41779892 - AluSx SINE Alu -23 289 1 280 98 0 0 chr6 140635350 140635391 -41779851 + MSTA LTR MaLR 388 428 0 195 69 0 0 chr6 140636395 140636424 -41778818 + (TA)n Simple_repeat Simple_repeat 2 30 0 196 338 167 14 chr6 140636491 140636701 -41778541 + MIR SINE MIR 20 261 -1 1252 155 108 5 chr6 140637093 140637434 -41777808 + MSTB1 LTR MaLR 1 432 0 320 234 39 78 chr6 140637896 140638024 -41777218 - HAL1b LINE L1 -23 1325 1203 213 231 0 0 chr6 140638075 140638127 -41777115 + (TA)n Simple_repeat Simple_repeat 2 53 0 2211 186 64 7 chr6 140638214 140638804 -41776438 + L1M4 LINE L1 4 776 -6013 811 175 7 0 chr6 140638811 140638948 -41776294 - FLAM_C SINE Alu 0 143 6 2395 272 37 13 chr6 140638950 140639648 -41775594 + L1M4 LINE L1 919 1633 -5156 * 4600 172 22 0 chr6 140639632 140640576 -41774666 + L1M4 LINE L1 4313 5277 -1511 1662 115 0 0 chr6 140640862 140641079 -41774163 - AluSc SINE Alu -92 217 1 962 147 18 41 chr6 140641079 140641249 -41773993 - FRAM SINE Alu 0 166 1 1367 120 16 0 chr6 140641266 140641458 -41773784 - AluSg/x SINE Alu -1 311 117 21 57 0 0 chr6 140641938 140641973 -41773269 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 140642542 140642563 -41772679 + AT_rich Low_complexity Low_complexity 1 21 0 233 233 0 0 chr6 140643795 140643855 -41771387 + MER116 DNA Mariner 1 60 -20 1034 172 6 6 chr6 140644880 140645043 -41770199 - AluSc SINE Alu -146 163 1 21 0 0 0 chr6 140648897 140648918 -41766324 + AT_rich Low_complexity Low_complexity 1 21 0 299 299 46 21 chr6 140649506 140649700 -41765542 - HAL1 LINE L1 -915 1592 1394 296 300 59 36 chr6 140649847 140650067 -41765175 - L1MEd LINE L1 -4984 1135 911 280 272 176 8 chr6 140650606 140650731 -41764511 - MER102a DNA MER1_type 0 330 185 3726 142 57 39 chr6 140650761 140651536 -41763706 - L1MC1 LINE L1 -3 6330 5542 511 315 105 32 chr6 140651784 140652251 -41762991 + L1M4 LINE L1 5375 5875 -913 230 345 99 21 chr6 140652345 140652536 -41762706 - MIR SINE MIR -12 250 45 396 195 0 0 chr6 140654138 140654225 -41761017 + L1MA8 LINE L1 6007 6093 -198 352 169 0 0 chr6 140654329 140654388 -41760854 - AluJ/FLAM SINE Alu -243 59 1 655 44 11 11 chr6 140654443 140654534 -41760708 - AluY SINE Alu -8 303 213 216 0 0 0 chr6 140654599 140654623 -41760619 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2075 107 17 7 chr6 140654633 140654922 -41760320 + AluSx SINE Alu 1 292 -20 2036 109 0 7 chr6 140654922 140655236 -41760006 + AluSg SINE Alu 1 312 0 32 26 0 0 chr6 140656323 140656362 -41758880 + AT_rich Low_complexity Low_complexity 1 39 0 2327 100 0 3 chr6 140656426 140656735 -41758507 + AluSg SINE Alu 1 308 -2 2625 152 20 5 chr6 140657318 140657461 -41757781 + L1M2 LINE L1 4850 4989 -1308 1861 146 39 0 chr6 140657461 140657742 -41757500 + AluSx SINE Alu 1 292 -20 2625 152 20 5 chr6 140657742 140658304 -41756938 + L1M2 LINE L1 4989 5559 -738 1735 158 11 4 chr6 140658304 140658583 -41756659 + AluSx SINE Alu 21 301 -11 404 192 23 15 chr6 140658593 140658723 -41756519 + GA-rich Low_complexity Low_complexity 3 133 0 246 241 0 0 chr6 140658724 140658782 -41756460 + L1M2 LINE L1 5546 5603 -694 2455 120 20 6 chr6 140659211 140659568 -41755674 - THE1B LTR MaLR -2 362 1 778 285 30 30 chr6 140659612 140659824 -41755418 + L1ME3 LINE L1 1661 1875 -4521 2479 74 0 0 chr6 140659824 140660133 -41755109 + AluY SINE Alu 1 309 -2 778 285 30 30 chr6 140660133 140660324 -41754918 + L1ME3 LINE L1 1874 2064 -4332 879 210 51 5 chr6 140660324 140660519 -41754723 + MER3 DNA MER1_type 1 204 -5 1419 214 10 10 chr6 140660783 140661072 -41754170 + AluJb SINE Alu 1 289 -23 23 33 0 0 chr6 140661072 140661102 -41754140 + AT_rich Low_complexity Low_complexity 1 30 0 676 265 143 3 chr6 140661140 140661483 -41753759 - L1MC4 LINE L1 0 8042 7652 1447 230 101 56 chr6 140661627 140662379 -41752863 + L1ME3 LINE L1 4441 5226 -989 269 214 32 111 chr6 140662847 140662973 -41752269 - MLT1H LTR MaLR 0 549 434 3094 49 3 5 chr6 140666201 140666569 -41748673 + L1PA8 LINE L1 5800 6166 -6 6011 135 6 0 chr6 140666673 140667880 -41747362 - L1PA15 LINE L1 -7 6158 4934 1064 282 88 6 chr6 140667914 140668255 -41746987 + MLT1H1 LTR MaLR 8 371 -184 564 158 21 11 chr6 140668250 140668345 -41746897 - MLT1H1 LTR MaLR -60 495 400 * 530 177 62 35 chr6 140668381 140668494 -41746748 + MLT1H1 LTR MaLR 423 538 -17 1946 153 3 10 chr6 140669195 140669508 -41745734 + AluSx SINE Alu 1 311 -1 2215 112 0 3 chr6 140670300 140670607 -41744635 + AluSx SINE Alu 1 306 0 2170 125 3 6 chr6 140670722 140671033 -41744209 - AluSg SINE Alu 0 310 1 737 327 0 0 chr6 140671562 140671770 -41743472 - MIR SINE MIR -11 251 44 422 224 167 19 chr6 140672782 140672938 -41742304 + L1ME3 LINE L1 5699 5877 -354 2855 158 60 46 chr6 140672940 140673228 -41742014 + MER4E LTR ERV1 173 455 -324 2437 82 0 3 chr6 140673228 140673533 -41741709 - AluSx SINE Alu -8 304 1 2855 158 60 46 chr6 140673533 140673807 -41741435 + MER4E LTR ERV1 455 743 -36 605 209 114 6 chr6 140673829 140674011 -41741231 + L1ME3 LINE L1 5935 6095 -136 3350 63 2 0 chr6 140674037 140674436 -41740806 - L1PA8 LINE L1 -5 6167 5768 21 36 0 0 chr6 140674560 140674588 -41740654 + AT_rich Low_complexity Low_complexity 1 28 0 315 234 0 53 chr6 140674935 140675029 -41740213 - L1MC4 LINE L1 -1339 6703 6615 * 317 272 22 11 chr6 140674954 140675046 -41740196 + L1MC4 LINE L1 6617 6709 -1333 201 94 0 0 chr6 140675046 140675078 -41740164 + (TA)n Simple_repeat Simple_repeat 1 32 0 920 261 53 98 chr6 140677852 140677891 -41737351 - MER92A LTR ERV1 -14 622 583 2505 170 7 38 chr6 140677891 140678339 -41736903 + Tigger2a DNA MER2_type 1 434 0 920 261 53 98 chr6 140678339 140678715 -41736527 - MER92A LTR ERV1 -53 583 1 1170 233 136 23 chr6 140678721 140679119 -41736123 + L1MC4a LINE L1 6589 6955 -853 809 219 44 0 chr6 140679248 140679408 -41735834 + L1MCa LINE L1 400 566 -5860 * 2641 141 23 69 chr6 140679366 140679462 -41735780 - L1MCa LINE L1 -3949 2477 2378 547 233 23 8 chr6 140679462 140679591 -41735651 - FLAM_A SINE Alu -1 132 2 2641 141 23 69 chr6 140679591 140679898 -41735344 - L1MCa LINE L1 -4048 2378 2211 2296 108 0 0 chr6 140679898 140680203 -41735039 - AluSg SINE Alu -5 305 1 2641 141 23 69 chr6 140680203 140680421 -41734821 - L1MCa LINE L1 -4215 2211 1984 372 286 11 0 chr6 140680435 140680526 -41734716 + L1MCa LINE L1 860 951 -5465 183 162 0 0 chr6 140681537 140681574 -41733668 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 976 214 20 0 chr6 140681756 140681957 -41733285 - MER3 DNA MER1_type -4 205 1 766 304 130 23 chr6 140682011 140682109 -41733133 - L2 LINE L2 -453 2861 2775 2150 125 0 0 chr6 140682109 140682405 -41732837 + AluSx SINE Alu 1 296 -16 766 304 130 23 chr6 140682405 140682744 -41732498 - L2 LINE L2 -539 2775 2377 987 206 45 40 chr6 140683124 140683347 -41731895 + MER58A DNA MER1_type 1 224 0 528 314 88 50 chr6 140683360 140683701 -41731541 + MLT1K LTR MaLR 87 440 -148 547 233 25 0 chr6 140683723 140683843 -41731399 - MER3 DNA MER1_type -86 123 1 2275 113 0 0 chr6 140683864 140684165 -41731077 - AluSx SINE Alu -11 301 1 231 36 0 0 chr6 140684331 140684359 -41730883 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 766 242 64 39 chr6 140684962 140685297 -41729945 - MLT1I LTR MaLR -2 448 59 743 206 8 0 chr6 140685461 140685592 -41729650 - FLAM_C SINE Alu -10 133 2 2049 115 14 7 chr6 140685815 140686110 -41729132 - AluSq SINE Alu -15 298 2 1784 94 16 102 chr6 140686584 140686692 -41728550 + pTR5 LTR ERV1 108 224 -490 2230 74 27 3 chr6 140686692 140686988 -41728254 + AluY SINE Alu 1 303 -8 1784 94 16 102 chr6 140686988 140687248 -41727994 + pTR5 LTR ERV1 224 632 -82 697 231 0 0 chr6 140687272 140687419 -41727823 + MER3 DNA MER1_type 31 130 -79 * 827 204 176 4 chr6 140687415 140687660 -41727582 + MER3 DNA MER1_type 2236 2522 0 47 61 0 0 chr6 140687679 140687761 -41727481 + AT_rich Low_complexity Low_complexity 1 82 0 396 171 154 63 chr6 140687761 140687906 -41727336 + MER3 DNA MER1_type 2433 2598 -26 2290 116 0 10 chr6 140687906 140688217 -41727025 - AluSq SINE Alu -5 308 1 396 171 154 63 chr6 140688217 140688246 -41726996 + MER3 DNA MER1_type 2598 2623 -1 308 298 77 0 chr6 140689180 140689284 -41725958 + MIR SINE MIR 43 154 -108 1590 181 3 27 chr6 140689898 140690197 -41725045 - AluJo SINE Alu -11 301 10 268 270 20 40 chr6 140690232 140690332 -41724910 + ORSL DNA AcHobo 168 265 -10 968 163 12 18 chr6 140690362 140690528 -41724714 - MER5A DNA MER1_type -24 165 1 185 294 44 44 chr6 140690703 140690771 -41724471 + MIR SINE MIR 58 125 -83 1415 319 69 31 chr6 140691631 140692331 -41722911 + L1MEd LINE L1 31 756 -5363 329 275 37 9 chr6 140692403 140692512 -41722730 + MER117 DNA MER1_type 3 114 -83 202 233 0 0 chr6 140692681 140692724 -41722518 + L2 LINE L2 3205 3247 -25 6637 99 10 5 chr6 140692730 140693670 -41721572 - L1MA1 LINE L1 0 6302 5359 6041 105 18 8 chr6 140693670 140695400 -41719842 - L1PA13 LINE L1 -4 6159 4435 4692 214 90 7 chr6 140695403 140696467 -41718775 - L1PA13 LINE L1 -5630 1157 5 851 81 0 9 chr6 140696491 140696637 -41718605 - L1M LINE L1 -777 5369 5240 183 282 51 94 chr6 140697667 140697784 -41717458 - L2 LINE L2 -13 3259 3148 1906 127 178 24 chr6 140697988 140698121 -41717121 - MSTA LTR MaLR 0 428 317 2265 122 44 33 chr6 140698121 140698481 -41716761 - THE1B LTR MaLR 0 364 1 1906 127 178 24 chr6 140698481 140698718 -41716524 - MSTA LTR MaLR -111 317 1 322 341 31 9 chr6 140698778 140698981 -41716261 + MER63 DNA MER1_type 1 1061 0 1610 179 82 24 chr6 140700218 140700548 -41714694 + MSTD LTR MaLR 1 349 -47 4424 231 73 61 chr6 140700733 140701319 -41713923 + L1MD2 LINE L1 4011 4589 -1770 1454 193 3 68 chr6 140701319 140701427 -41713815 + AluJb SINE Alu 2 115 -197 1798 114 33 7 chr6 140701427 140701746 -41713496 - AluSx SINE Alu 0 328 3 1454 193 3 68 chr6 140701746 140701957 -41713285 + AluJb SINE Alu 115 302 -10 4424 231 73 61 chr6 140701957 140703688 -41711554 + L1MD2 LINE L1 4589 6359 0 1198 85 18 6 chr6 140703795 140703960 -41711282 + AluSg/x SINE Alu 138 304 -8 569 92 0 11 chr6 140704283 140704370 -41710872 + L1MA7 LINE L1 6200 6285 -6 2299 156 79 16 chr6 140704843 140705286 -41709956 - L1MB2 LINE L1 -15 6156 5686 2278 100 10 0 chr6 140705345 140705645 -41709597 - AluSp SINE Alu -10 303 1 1301 170 0 22 chr6 140705650 140705873 -41709369 - AluJo SINE Alu -16 296 79 1048 250 78 62 chr6 140706439 140706943 -41708299 - MLT1H LTR MaLR 0 549 38 512 178 0 0 chr6 140707011 140707084 -41708158 + FLAM_A SINE Alu 3 75 -67 3958 38 0 2 chr6 140707302 140707751 -41707491 - LTR7 LTR ERV1 -2 448 1 2601 74 45 13 chr6 140707751 140708131 -41707111 - HERVH LTR ERV1 0 7713 7322 1246 113 88 10 chr6 140708129 140708333 -41706909 - HERVH LTR ERV1 -1894 5819 5600 * 4462 136 1 3 chr6 140708334 140708997 -41706245 - HERVH LTR ERV1 -2564 5149 4488 3460 100 10 6 chr6 140708999 140709499 -41705743 - HERVH LTR ERV1 -3720 3993 3492 * 20544 89 62 42 chr6 140709489 140712714 -41702528 - HERVH LTR ERV1 -4423 3290 1 3711 51 0 13 chr6 140712716 140713170 -41702072 - LTR7 LTR ERV1 -2 448 1 330 222 0 0 chr6 140713377 140713467 -41701775 + GA-rich Low_complexity Low_complexity 3 92 0 27 29 0 0 chr6 140713883 140713917 -41701325 + AT_rich Low_complexity Low_complexity 1 34 0 186 246 105 0 chr6 140714555 140714612 -41700630 + MIR SINE MIR 200 262 0 23 0 0 0 chr6 140715212 140715235 -41700007 + AT_rich Low_complexity Low_complexity 1 23 0 240 175 0 70 chr6 140715427 140715484 -41699758 - L2 LINE L2 -5 3267 3215 2456 168 39 5 chr6 140715512 140715924 -41699318 + MSTB LTR MaLR 1 426 0 2043 143 138 16 chr6 140715978 140716355 -41698887 + MSTA LTR MaLR 6 428 0 466 160 64 21 chr6 140716426 140716520 -41698722 + LTR8 LTR ERV1 1 98 -593 1412 176 163 69 chr6 140716533 140716925 -41698317 + LTR8A LTR ERV1 299 727 0 2204 153 27 47 chr6 140717020 140717466 -41697776 - LTR23 LTR ERV1 0 437 1 185 339 0 0 chr6 140717942 140718007 -41697235 + L2 LINE L2 3159 3223 -49 2417 66 26 0 chr6 140718261 140718443 -41696799 - AluY SINE Alu 0 311 116 441 0 0 0 chr6 140718443 140718492 -41696750 + (TG)n Simple_repeat Simple_repeat 2 50 0 2417 66 26 0 chr6 140718492 140718612 -41696630 - AluY SINE Alu -195 116 1 1865 131 25 0 chr6 140720148 140720430 -41694812 + AluSx SINE Alu 8 296 -16 2350 76 26 3 chr6 140720466 140720770 -41694472 + AluY SINE Alu 1 311 0 4866 227 98 19 chr6 140721580 140722962 -41692280 + L1MDa LINE L1 24 1514 -5026 2656 68 0 11 chr6 140724726 140725081 -41690161 + L1P4 LINE L1 5456 5806 -368 2906 80 35 0 chr6 140725091 140725492 -41689750 + L1PA11 LINE L1 5752 6166 -8 200 290 220 0 chr6 140725531 140725631 -41689611 + MIR SINE MIR 85 206 -56 537 245 83 47 chr6 140725704 140725896 -41689346 + MLT1J LTR MaLR 313 511 0 234 167 71 0 chr6 140726229 140726271 -41688971 + L2 LINE L2 3226 3270 -43 234 231 198 0 chr6 140726330 140726421 -41688821 - MER117 DNA MER1_type -75 122 14 2067 108 17 3 chr6 140726558 140726855 -41688387 + AluSx SINE Alu 1 301 -11 2327 79 0 23 chr6 140726855 140727160 -41688082 + AluY SINE Alu 1 298 -13 1339 79 0 0 chr6 140727160 140727325 -41687917 + AluY SINE Alu 133 297 -14 854 143 0 0 chr6 140727656 140727789 -41687453 + FLAM_C SINE Alu 1 133 0 1649 173 13 26 chr6 140729924 140730231 -41685011 - AluJo SINE Alu -9 303 1 347 84 67 17 chr6 140732042 140732161 -41683081 + (TA)n Simple_repeat Simple_repeat 1 125 0 252 0 0 0 chr6 140732660 140732688 -41682554 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2028 125 3 3 chr6 140732695 140732984 -41682258 - AluSx SINE Alu -23 289 1 1087 62 0 0 chr6 140732984 140733112 -41682130 - AluY SINE Alu -177 134 7 380 250 103 103 chr6 140734076 140734124 -41681118 - MIR3 SINE MIR -6 202 155 2466 73 0 13 chr6 140734124 140734438 -41680804 - AluY SINE Alu -1 310 1 380 250 103 103 chr6 140734438 140734573 -41680669 - MIR3 SINE MIR -52 156 19 239 219 82 27 chr6 140735324 140735397 -41679845 - MIR SINE MIR -76 186 110 1750 178 0 7 chr6 140736307 140736605 -41678637 - AluJo SINE Alu -14 298 3 297 0 0 0 chr6 140736820 140736853 -41678389 + (TA)n Simple_repeat Simple_repeat 1 33 0 1183 108 0 0 chr6 140736853 140737010 -41678232 - AluSg/x SINE Alu -2 308 152 305 318 198 5 chr6 140737982 140738174 -41677068 - MIR SINE MIR -16 246 18 338 214 0 60 chr6 140738178 140738262 -41676980 - MIR SINE MIR 0 262 184 4004 124 16 41 chr6 140739498 140740207 -41675035 - L1PB4 LINE L1 -1 6155 5465 804 192 40 62 chr6 140741319 140741543 -41673699 + MER20 DNA MER1_type 1 219 0 255 146 109 0 chr6 140742265 140742320 -41672922 + L1ME4a LINE L1 5961 6021 -100 240 256 0 0 chr6 140742890 140742976 -41672266 + (TCCA)n Simple_repeat Simple_repeat 1 86 0 23 33 0 0 chr6 140743480 140743510 -41671732 + AT_rich Low_complexity Low_complexity 1 30 0 2120 104 4 0 chr6 140743635 140743913 -41671329 - AluSc SINE Alu -20 289 11 2055 102 0 81 chr6 140744840 140745173 -41670069 - AluSx SINE Alu -6 306 1 186 43 0 0 chr6 140745800 140745823 -41669419 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1619 168 33 26 chr6 140745980 140746284 -41668958 + AluJo SINE Alu 1 306 -6 21 36 0 0 chr6 140746431 140746459 -41668783 + AT_rich Low_complexity Low_complexity 1 28 0 285 140 0 0 chr6 140746777 140746834 -41668408 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 2248 107 3 7 chr6 140748698 140749008 -41666234 - AluSx SINE Alu -3 309 1 282 113 19 19 chr6 140749052 140749105 -41666137 - MADE1 DNA Mariner -1 79 27 2035 91 30 40 chr6 140750790 140751087 -41664155 - AluSc SINE Alu -15 294 1 34 0 0 0 chr6 140751292 140751326 -41663916 + AT_rich Low_complexity Low_complexity 1 34 0 2658 176 18 110 chr6 140751598 140752359 -41662883 + LTR8 LTR ERV1 1 691 0 2299 98 3 0 chr6 140752525 140752832 -41662410 - AluSq SINE Alu -5 308 1 704 235 32 69 chr6 140753427 140753644 -41661598 - MIR SINE MIR -5 257 49 25 0 0 0 chr6 140753730 140753755 -41661487 + AT_rich Low_complexity Low_complexity 1 25 0 736 120 19 0 chr6 140754595 140754703 -41660539 + AluSc SINE Alu 1 110 -199 2259 123 23 40 chr6 140754705 140755104 -41660138 + LTR3 LTR ERVK 5 396 -36 1491 102 0 0 chr6 140755138 140755335 -41659907 + AluSc SINE Alu 103 299 -10 576 280 18 42 chr6 140755688 140755856 -41659386 - MIR3 SINE MIR -7 201 38 6379 19 0 0 chr6 140756906 140757641 -41657601 - L1PA2 LINE L1 0 6155 5421 6992 26 0 0 chr6 140757641 140758480 -41656762 + L1PA2 LINE L1 4565 5403 -743 2047 136 0 0 chr6 140759094 140759381 -41655861 + AluSx SINE Alu 1 287 -25 1870 138 39 0 chr6 140760285 140760455 -41654787 - AluJo SINE Alu -8 304 117 180 0 0 0 chr6 140760455 140760475 -41654767 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1870 138 39 0 chr6 140760475 140760587 -41654655 - AluJo SINE Alu -195 117 11 1283 151 49 0 chr6 140762146 140762371 -41652871 + MER46A DNA MER2_type 1 236 0 393 190 38 101 chr6 140763153 140763311 -41651931 + L1MC5 LINE L1 7770 7917 -44 1520 184 0 0 chr6 140763894 140764144 -41651098 + AluJo SINE Alu 44 293 -19 221 338 14 0 chr6 140765478 140765552 -41649690 + L2 LINE L2 3239 3313 0 27 0 0 0 chr6 140766182 140766209 -41649033 + AT_rich Low_complexity Low_complexity 1 27 0 402 21 0 0 chr6 140766816 140766863 -41648379 + (CA)n Simple_repeat Simple_repeat 1 47 0 865 201 6 6 chr6 140766991 140767160 -41648082 - FRAM SINE Alu -7 169 1 497 217 67 0 chr6 140767227 140767347 -41647895 + L1ME3A LINE L1 6038 6165 -5 595 296 29 17 chr6 140767597 140767769 -41647473 + MIR3 SINE MIR 20 193 -15 251 299 60 0 chr6 140768572 140768639 -41646603 - L2 LINE L2 -54 3218 3148 1880 102 15 15 chr6 140768994 140769268 -41645974 + AluSx SINE Alu 34 307 -5 4379 182 23 32 chr6 140769279 140769389 -41645853 - Tigger6a DNA MER2_type -646 951 841 1989 106 88 0 chr6 140769389 140769673 -41645569 + AluSg1 SINE Alu 1 309 0 4379 182 23 32 chr6 140769673 140770522 -41644720 - Tigger6a DNA MER2_type -756 841 1 215 132 26 0 chr6 140770721 140770759 -41644483 + (CA)n Simple_repeat Simple_repeat 2 40 0 193 253 241 0 chr6 140771899 140771986 -41643256 - L2 LINE L2 -3 3310 3203 504 287 89 5 chr6 140772451 140772653 -41642589 - MIR SINE MIR 0 262 44 436 304 71 38 chr6 140772913 140773097 -41642145 + L2 LINE L2 3078 3267 -5 375 261 52 0 chr6 140773907 140774022 -41641220 - L2 LINE L2 0 3313 3193 230 373 73 10 chr6 140774005 140774209 -41641033 + MIR SINE MIR 40 256 -6 * 321 266 89 12 chr6 140774687 140774856 -41640386 + L1ME4a LINE L1 5630 5811 -310 243 241 138 26 chr6 140774913 140775029 -41640213 + L1ME4a LINE L1 5802 5930 -191 450 333 63 56 chr6 140775197 140775607 -41639635 + HAL1 LINE L1 701 1433 -1074 351 283 116 48 chr6 140775658 140776184 -41639058 - L1MEc LINE L1 -2562 3653 3092 483 320 41 14 chr6 140776330 140776692 -41638550 - L1MEc LINE L1 -4708 1688 1317 350 254 102 34 chr6 140776696 140776873 -41638369 + L1ME LINE L1 749 937 -5133 2391 87 17 0 chr6 140777176 140777476 -41637766 - AluSx SINE Alu -7 305 1 369 0 0 0 chr6 140777506 140777547 -41637695 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 0 0 0 chr6 140778282 140778304 -41636938 + (CA)n Simple_repeat Simple_repeat 2 23 0 2334 103 0 3 chr6 140778306 140778607 -41636635 + AluSq SINE Alu 1 300 -13 1599 83 39 4 chr6 140778931 140779161 -41636081 + L1PA11 LINE L1 5935 6172 -2 23 33 0 0 chr6 140779161 140779191 -41636051 + AT_rich Low_complexity Low_complexity 1 30 0 264 314 116 0 chr6 140779662 140779748 -41635494 + MIR3 SINE MIR 81 176 -32 2117 82 0 91 chr6 140779861 140780191 -41635051 + AluSg SINE Alu 1 300 -10 341 293 195 0 chr6 140781071 140781245 -41633997 + L1ME4a LINE L1 4993 5200 -946 523 269 87 52 chr6 140781378 140781824 -41633418 + L1ME4a LINE L1 5364 5825 -296 417 146 47 88 chr6 140781831 140781959 -41633283 + MLT1G LTR MaLR 187 322 -273 256 284 11 11 chr6 140782031 140782119 -41633123 + MLT1G LTR MaLR 408 495 -72 3983 172 76 20 chr6 140782564 140783477 -41631765 + L1MC3 LINE L1 6814 7777 -8 2029 140 0 13 chr6 140783577 140783891 -41631351 - AluJb SINE Alu -2 310 1 279 194 0 0 chr6 140784461 140784523 -41630719 + LTR16A LTR ERVL 303 364 -86 483 286 0 7 chr6 140784554 140784694 -41630548 + LTR16A LTR ERVL 303 441 -9 509 279 106 61 chr6 140784748 140785145 -41630097 + LTR33A LTR ERVL 60 512 -11 207 186 0 0 chr6 140785166 140785209 -41630033 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 186 250 47 0 chr6 140785999 140786063 -41629179 + L2 LINE L2 2271 2337 -977 21 36 0 0 chr6 140786255 140786283 -41628959 + AT_rich Low_complexity Low_complexity 1 28 0 608 221 25 59 chr6 140789140 140789344 -41625898 + MER3 DNA MER1_type 5 201 -8 2223 105 3 0 chr6 140789637 140789941 -41625301 - AluSx SINE Alu -7 305 1 1226 299 6 97 chr6 140789966 140790306 -41624936 + AluSx SINE Alu 1 312 0 852 264 12 29 chr6 140790760 140791006 -41624236 - MIR SINE MIR -16 246 5 221 265 29 0 chr6 140791568 140791636 -41623606 - MIR SINE MIR -5 257 188 388 257 95 9 chr6 140792322 140792427 -41622815 - MIR3 SINE MIR -18 190 77 525 226 174 26 chr6 140793511 140793666 -41621576 - MER5A DNA MER1_type -3 186 9 184 299 235 29 chr6 140793754 140793958 -41621284 - MIR SINE MIR -12 250 5 287 286 98 23 chr6 140793976 140794109 -41621133 + MIR SINE MIR 74 216 -46 878 119 4 183 chr6 140794179 140794414 -41620828 - 7SK RNA RNA 0 193 1 390 169 0 0 chr6 140794548 140794619 -41620623 - Charlie1a DNA MER1_type -430 1025 955 2831 181 81 53 chr6 140795479 140796087 -41619155 - Charlie1a DNA MER1_type -1836 925 287 2362 74 0 7 chr6 140796087 140796384 -41618858 - AluY SINE Alu -16 295 1 2831 181 81 53 chr6 140796384 140796586 -41618656 - Charlie1a DNA MER1_type -2474 287 92 294 29 0 0 chr6 140796962 140796997 -41618245 + (TG)n Simple_repeat Simple_repeat 1 35 0 309 100 0 0 chr6 140796997 140797047 -41618195 + (GA)n Simple_repeat Simple_repeat 1 50 0 504 192 131 0 chr6 140797047 140797146 -41618096 - AluJb SINE Alu -194 118 7 531 281 13 20 chr6 140797664 140797817 -41617425 + MER5A DNA MER1_type 28 179 -10 258 240 33 116 chr6 140797829 140797950 -41617292 + MIR SINE MIR 102 212 -50 2181 89 0 63 chr6 140798728 140799044 -41616198 + AluSx SINE Alu 1 296 -16 626 140 0 26 chr6 140800237 140800351 -41614891 + LTR23 LTR ERV1 322 432 -5 662 207 0 0 chr6 140800463 140800584 -41614658 - FLAM_C SINE Alu -22 121 1 1373 194 21 4 chr6 140800873 140801152 -41614090 + MER49 LTR ERV1 1 284 -639 1904 125 0 81 chr6 140801206 140801526 -41613716 - AluSx SINE Alu -18 294 1 1370 199 8 60 chr6 140801535 140801609 -41613633 + MER4D LTR ERV1 571 647 -256 1956 138 7 3 chr6 140801609 140801898 -41613344 + AluSx SINE Alu 3 292 -20 1370 199 8 60 chr6 140801898 140802174 -41613068 + MER4D LTR ERV1 647 903 0 2300 118 36 3 chr6 140802925 140803314 -41611928 + LTR23 LTR ERV1 1 402 -35 310 265 29 49 chr6 140803318 140803420 -41611822 + L1MC4 LINE L1 6626 6725 -1317 1605 192 7 4 chr6 140804396 140804672 -41610570 - AluJb SINE Alu -35 277 1 201 280 178 45 chr6 140805600 140805757 -41609485 - MIR SINE MIR -75 187 10 1207 223 59 110 chr6 140808202 140808847 -41606395 + LTR9 LTR ERV1 1 612 0 417 248 53 66 chr6 140808990 140809216 -41606026 + MARNA DNA Mariner 273 495 -91 463 222 5 120 chr6 140809453 140809669 -41605573 - Charlie8 DNA MER1_type -2226 191 1 2280 110 0 0 chr6 140809768 140810069 -41605173 + AluSx SINE Alu 1 301 -11 334 246 0 0 chr6 140810777 140810842 -41604400 + MIR SINE MIR 78 142 -120 2977 129 2 7 chr6 140811212 140811662 -41603580 + MER83 LTR ERV1 1 448 0 3347 184 34 112 chr6 140811780 140813968 -41601274 - L1ME1 LINE L1 -4 6973 4962 1346 261 166 39 chr6 140813945 140814177 -41601065 - L1ME1 LINE L1 -2440 4517 4316 * 1834 168 13 10 chr6 140814177 140814481 -41600761 + AluJb SINE Alu 1 305 -7 1346 261 166 39 chr6 140814481 140815990 -41599252 - L1ME1 LINE L1 -2641 4316 2583 192 152 0 0 chr6 140815999 140816032 -41599210 + (TA)n Simple_repeat Simple_repeat 2 34 0 329 252 74 15 chr6 140816049 140816184 -41599058 - L1ME1 LINE L1 -5425 1434 1292 242 313 93 27 chr6 140816460 140816610 -41598632 - Charlie8 DNA MER1_type -2257 160 1 1061 279 73 37 chr6 140818709 140819137 -41596105 + L1MDa LINE L1 1448 1965 -4756 1947 149 133 13 chr6 140819137 140819519 -41595723 + MSTA LTR MaLR 1 428 0 1061 279 73 37 chr6 140819519 140819800 -41595442 + L1MDa LINE L1 1965 2235 -4486 1978 152 0 7 chr6 140819858 140820160 -41595082 + AluJb SINE Alu 1 300 -12 543 221 23 70 chr6 140820162 140820289 -41594953 + L1MDa LINE L1 3475 3586 -2954 1431 149 51 78 chr6 140820289 140820585 -41594657 - AluJb SINE Alu -23 289 2 543 221 23 70 chr6 140820585 140820715 -41594527 + L1MDa LINE L1 3586 3720 -2820 254 128 43 0 chr6 140820716 140820763 -41594479 - MLT1C LTR MaLR -417 50 2 22 35 0 0 chr6 140820987 140821016 -41594226 + AT_rich Low_complexity Low_complexity 1 29 0 1350 206 63 14 chr6 140821080 140821367 -41593875 - AluJo SINE Alu -11 301 1 901 245 89 45 chr6 140821373 140821522 -41593720 + HAL1 LINE L1 85 226 -2281 2043 115 7 0 chr6 140821522 140821801 -41593441 + AluSg SINE Alu 1 281 -29 901 245 89 45 chr6 140821801 140822055 -41593187 + HAL1 LINE L1 226 506 -2001 259 387 35 42 chr6 140822163 140822305 -41592937 - L2 LINE L2 -25 3247 3107 482 163 0 0 chr6 140822635 140822715 -41592527 - MADE1 DNA Mariner 0 80 1 283 357 50 14 chr6 140823003 140823143 -41592099 - L2 LINE L2 -211 3061 2917 2355 88 0 3 chr6 140823726 140824031 -41591211 + AluY SINE Alu 1 304 -7 26 30 0 0 chr6 140824048 140824081 -41591161 + AT_rich Low_complexity Low_complexity 1 33 0 255 291 0 19 chr6 140824199 140824302 -41590940 - L1MC4 LINE L1 -1327 6715 6615 244 281 22 0 chr6 140824226 140824315 -41590927 + L1MC4 LINE L1 6613 6703 -1339 * 602 224 12 0 chr6 140824324 140824485 -41590757 + (TATATG)n Simple_repeat Simple_repeat 6 168 0 230 247 24 0 chr6 140824486 140824571 -41590671 + L1MC4 LINE L1 6615 6701 -1341 349 250 0 22 chr6 140824577 140824669 -41590573 + L1MC4 LINE L1 6614 6703 -1339 1972 114 0 0 chr6 140824674 140824928 -41590314 - AluSx SINE Alu -58 254 1 400 274 71 74 chr6 140825122 140825432 -41589810 - L2 LINE L2 0 3313 3005 345 280 104 45 chr6 140826872 140827140 -41588102 - L1ME LINE L1 -323 5798 5515 887 231 95 16 chr6 140827175 140827417 -41587825 - MIR SINE MIR 0 262 2 312 256 94 28 chr6 140827418 140827598 -41587644 - L1ME LINE L1 -2325 5483 5292 1323 209 110 29 chr6 140827850 140827919 -41587323 - MLT1G LTR MaLR 0 590 528 1611 164 119 0 chr6 140827919 140828229 -41587013 + MER7A DNA MER2_type 2 346 0 1323 209 110 29 chr6 140828229 140828681 -41586561 - MLT1G LTR MaLR -62 528 13 1006 238 10 12 chr6 140828984 140829269 -41585973 + L1MC5 LINE L1 6967 7249 -735 190 346 70 19 chr6 140829505 140829661 -41585581 + L2 LINE L2 731 894 -2420 661 163 32 8 chr6 140829753 140829876 -41585366 - FLAM_A SINE Alu -7 126 1 1753 199 20 75 chr6 140829910 140830403 -41584839 + MLT1C LTR MaLR 2 467 0 2769 88 11 11 chr6 140830603 140830978 -41584264 + THE1C LTR MaLR 1 375 0 2099 304 46 21 chr6 140831031 140832614 -41582628 - HERV16 LTR ERVL -2578 2418 732 21 0 0 0 chr6 140832624 140832645 -41582597 + AT_rich Low_complexity Low_complexity 1 21 0 380 340 26 19 chr6 140833340 140833496 -41581746 + MIR SINE MIR 7 163 -99 21 57 0 0 chr6 140834402 140834437 -41580805 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr6 140835035 140835059 -41580183 + (TTA)n Simple_repeat Simple_repeat 3 26 0 2124 144 0 0 chr6 140835597 140835909 -41579333 - AluSq SINE Alu -1 312 1 21 0 0 0 chr6 140836004 140836025 -41579217 + AT_rich Low_complexity Low_complexity 1 21 0 2019 154 0 0 chr6 140836746 140837044 -41578198 - AluSx SINE Alu -12 300 3 216 0 0 0 chr6 140837847 140837871 -41577371 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 548 139 0 0 chr6 140837962 140838041 -41577201 + AluJ/FLAM SINE Alu 5 83 -229 1813 100 11 0 chr6 140838284 140838554 -41576688 + L1PA13 LINE L1 5888 6160 -3 1117 277 91 11 chr6 140839044 140839513 -41575729 - L2 LINE L2 -13 3300 2794 2200 113 7 0 chr6 140839898 140840191 -41575051 + AluSx SINE Alu 1 295 -17 297 263 100 19 chr6 140840657 140840817 -41574425 - MIR SINE MIR -10 252 80 4487 126 20 9 chr6 140841504 140842186 -41573056 + LTR8 LTR ERV1 2 691 0 407 209 0 170 chr6 140842736 140842889 -41572353 - L2 LINE L2 0 3313 3187 1831 271 65 49 chr6 140843055 140843149 -41572093 + L2 LINE L2 2284 2375 -938 1809 144 0 85 chr6 140843149 140843490 -41571752 - AluJo SINE Alu 0 312 1 1831 271 65 49 chr6 140843490 140844408 -41570834 + L2 LINE L2 2375 3313 0 384 281 37 7 chr6 140844419 140844554 -41570688 + MIR3 SINE MIR 3 141 -67 21 0 0 0 chr6 140844707 140844728 -41570514 + AT_rich Low_complexity Low_complexity 1 21 0 2054 124 0 3 chr6 140845245 140845536 -41569706 + AluSx SINE Alu 1 290 -22 238 216 0 0 chr6 140845701 140845752 -41569490 - L2 LINE L2 0 3272 3222 228 35 0 0 chr6 140845772 140845801 -41569441 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 258 250 150 10 chr6 140845811 140845911 -41569331 + L3 LINE CR1 351 464 -1113 2167 117 42 99 chr6 140846060 140846290 -41568952 - MSTA LTR MaLR 0 428 235 2194 102 9 22 chr6 140846290 140846605 -41568637 - AluSp SINE Alu 0 313 3 2167 117 42 99 chr6 140846605 140846828 -41568414 - MSTA LTR MaLR -193 235 1 274 306 67 52 chr6 140846851 140847119 -41568123 + L3 LINE CR1 1020 1291 -286 202 206 206 0 chr6 140847132 140847195 -41568047 - MIR SINE MIR -11 251 176 2251 119 0 0 chr6 140847201 140847512 -41567730 - AluSx SINE Alu -1 311 1 478 314 15 0 chr6 140848746 140848883 -41566359 - MIR SINE MIR -14 248 110 400 291 78 39 chr6 140849859 140850295 -41564947 - L1ME4a LINE L1 -26 6095 5643 325 311 53 23 chr6 140850733 140850865 -41564377 - MIR SINE MIR -8 254 119 308 376 0 9 chr6 140851291 140851400 -41563842 - MIR SINE MIR -77 131 24 188 35 35 0 chr6 140851502 140851531 -41563711 + (CA)n Simple_repeat Simple_repeat 2 31 0 346 305 114 15 chr6 140851660 140851791 -41563451 + L2 LINE L2 3129 3272 0 2179 131 25 43 chr6 140851971 140852368 -41562874 - MLT1B LTR MaLR 0 390 1 27 0 0 0 chr6 140852533 140852560 -41562682 + AT_rich Low_complexity Low_complexity 1 27 0 2028 149 0 16 chr6 140852563 140852878 -41562364 + AluSx SINE Alu 1 310 -2 623 122 19 0 chr6 140852880 140852987 -41562255 + GA-rich Low_complexity Low_complexity 3 111 0 312 245 143 0 chr6 140853868 140853966 -41561276 + MIR SINE MIR 122 233 -29 360 0 0 0 chr6 140854924 140854964 -41560278 + (TG)n Simple_repeat Simple_repeat 1 40 0 801 172 0 6 chr6 140855269 140855426 -41559816 + L1MA9 LINE L1 6119 6274 -38 687 232 16 0 chr6 140856691 140856881 -41558361 + L1MD3 LINE L1 7784 7976 -19 283 206 0 0 chr6 140856953 140857016 -41558226 + MER116 DNA Mariner 9 71 -9 1602 152 6 82 chr6 140857183 140857511 -41557731 - AluSx SINE Alu -9 303 1 294 339 52 0 chr6 140857625 140857740 -41557502 + L2 LINE L2 2950 3070 -243 777 169 0 0 chr6 140857780 140857928 -41557314 - AluJb SINE Alu 0 306 159 2137 118 0 9 chr6 140857983 140858298 -41556944 - AluSx SINE Alu 0 312 1 637 218 15 76 chr6 140858298 140858495 -41556747 + L2 LINE L2 3129 3313 0 650 290 68 9 chr6 140859213 140859434 -41555808 - MIR SINE MIR -27 235 2 22 35 0 0 chr6 140861381 140861410 -41553832 + AT_rich Low_complexity Low_complexity 1 29 0 2109 230 129 49 chr6 140861507 140861775 -41553467 + L1MC4a LINE L1 5628 5873 -1935 1771 157 0 31 chr6 140861775 140862069 -41553173 + AluJb SINE Alu 24 308 -4 2109 230 129 49 chr6 140862069 140862697 -41552545 + L1MC4a LINE L1 5873 6596 -1212 1796 170 18 9 chr6 140862706 140863036 -41552206 - MER49 LTR ERV1 0 923 591 256 128 0 0 chr6 140863033 140863072 -41552170 + 5S rRNA rRNA 1 39 -82 * 3191 131 30 59 chr6 140863072 140863388 -41551854 - MER49 LTR ERV1 -313 610 318 2083 107 0 4 chr6 140863388 140863711 -41551531 + AluSg SINE Alu 1 322 0 3191 131 30 59 chr6 140863711 140864021 -41551221 - MER49 LTR ERV1 -605 318 1 2827 254 110 22 chr6 140864057 140865262 -41549980 + L1MC4 LINE L1 6692 8002 -40 872 151 0 8 chr6 140865262 140865388 -41549854 - AluSq/x SINE Alu -187 125 1 1196 108 0 0 chr6 140865696 140865853 -41549389 + AluSc SINE Alu 131 287 -22 964 189 50 40 chr6 140866621 140866702 -41548540 + MER58A DNA MER1_type 1 80 -2340 1773 112 60 91 chr6 140866702 140867087 -41548155 + THE1C LTR MaLR 1 373 -2 964 189 50 40 chr6 140867087 140867227 -41548015 + MER58A DNA MER1_type 80 224 0 359 314 174 3 chr6 140867229 140867522 -41547720 - L1MC4a LINE L1 -1888 5920 5578 350 272 61 85 chr6 140868684 140868799 -41546443 - L1MC/D LINE L1 -2083 5725 5609 1783 109 117 8 chr6 140868799 140869065 -41546177 - AluSx SINE Alu -17 295 1 350 272 61 85 chr6 140869065 140869195 -41546047 - L1MC/D LINE L1 -2199 5609 5486 189 305 34 34 chr6 140869685 140869803 -41545439 + L2 LINE L2 1932 2049 -1265 297 0 0 0 chr6 140870065 140870098 -41545144 + (TG)n Simple_repeat Simple_repeat 2 34 0 254 316 0 0 chr6 140870645 140870721 -41544521 + GA-rich Low_complexity Low_complexity 1 76 0 1767 142 33 7 chr6 140871043 140871351 -41543891 - AluSx SINE Alu 0 315 1 332 262 203 53 chr6 140871427 140871614 -41543628 - MIR SINE MIR -47 215 1 207 0 0 0 chr6 140872280 140872303 -41542939 + (TTG)n Simple_repeat Simple_repeat 2 24 0 229 333 65 37 chr6 140873578 140873686 -41541556 + L2 LINE L2 3156 3266 -6 228 35 0 0 chr6 140873838 140873867 -41541375 + (TG)n Simple_repeat Simple_repeat 2 30 0 1290 158 17 4 chr6 140873987 140874221 -41541021 + L1MA6 LINE L1 6059 6295 -5 221 221 0 29 chr6 140874894 140874962 -41540280 + (TA)n Simple_repeat Simple_repeat 1 66 0 824 137 0 15 chr6 140874981 140875112 -41540130 - FLAM_C SINE Alu -4 129 1 216 0 0 0 chr6 140875283 140875307 -41539935 + (A)n Simple_repeat Simple_repeat 1 24 0 638 282 107 0 chr6 140875683 140875889 -41539353 + MIR SINE MIR 14 241 -21 21 0 0 0 chr6 140877625 140877646 -41537596 + AT_rich Low_complexity Low_complexity 1 21 0 1531 214 58 31 chr6 140877710 140878158 -41537084 + MLT1C LTR MaLR 1 460 -7 2625 91 6 6 chr6 140878280 140878642 -41536600 + THE1B LTR MaLR 1 362 -2 455 277 138 21 chr6 140878698 140878886 -41536356 + MIR SINE MIR 4 213 -49 1383 157 4 0 chr6 140878907 140879142 -41536100 - L1MB1 LINE L1 -1 6167 5932 496 186 49 0 chr6 140879143 140879245 -41535997 + L1MB1 LINE L1 5830 5936 -232 728 174 8 15 chr6 140879294 140879426 -41535816 - FLAM_A SINE Alu -1 132 2 723 195 16 0 chr6 140879710 140879838 -41535404 - FLAM_C SINE Alu -3 130 1 2138 100 7 17 chr6 140879985 140880286 -41534956 - AluSx SINE Alu -14 298 1 210 37 0 0 chr6 140880605 140880632 -41534610 + (CAA)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr6 140880721 140880741 -41534501 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 349 132 0 0 chr6 140880746 140880799 -41534443 - U6 snRNA snRNA -54 53 1 1967 100 30 0 chr6 140881874 140882145 -41533097 + AluSg SINE Alu 1 279 -31 405 0 0 0 chr6 140882148 140882193 -41533049 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1954 129 29 0 chr6 140882199 140882479 -41532763 + AluSx SINE Alu 1 288 -24 25 31 0 0 chr6 140882711 140882743 -41532499 + AT_rich Low_complexity Low_complexity 1 32 0 368 245 248 36 chr6 140883006 140883284 -41531958 + HAL1 LINE L1 22 358 -2149 871 260 131 26 chr6 140883295 140883683 -41531559 + HAL1 LINE L1 439 867 -1640 664 212 98 44 chr6 140883687 140883971 -41531271 + HAL1 LINE L1 921 1223 -1284 2223 114 3 0 chr6 140883971 140884270 -41530972 - AluSx SINE Alu -12 300 1 664 212 98 44 chr6 140884270 140884282 -41530960 + HAL1 LINE L1 1223 1233 -1274 * 681 257 37 0 chr6 140884279 140884466 -41530776 + HAL1 LINE L1 1555 1748 -759 239 179 0 26 chr6 140885781 140885859 -41529383 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 2254 115 3 0 chr6 140887325 140887630 -41527612 - AluSq SINE Alu -7 306 1 282 282 122 32 chr6 140887865 140888053 -41527189 - L1M4 LINE L1 -987 5159 4955 247 394 57 34 chr6 140888150 140888325 -41526917 + L2 LINE L2 3090 3268 -4 329 243 32 122 chr6 140888933 140889122 -41526120 - MIR SINE MIR -1 261 90 1765 211 17 14 chr6 140889299 140889635 -41525607 + MLT1A1 LTR MaLR 4 343 -22 438 73 0 167 chr6 140889635 140889674 -41525568 + MADE1 DNA Mariner 1 16 -64 1984 119 0 56 chr6 140889674 140889977 -41525265 - AluSx SINE Alu -26 286 1 438 73 0 167 chr6 140889977 140890033 -41525209 + MADE1 DNA Mariner 16 80 0 1765 211 17 14 chr6 140890033 140890057 -41525185 + MLT1A1 LTR MaLR 343 365 0 239 296 14 0 chr6 140890095 140890166 -41525076 + L1ME LINE L1 5737 5808 -358 416 208 223 23 chr6 140890183 140890313 -41524929 - MIR SINE MIR -3 259 104 811 224 78 0 chr6 140890350 140890529 -41524713 - MIR SINE MIR -26 236 44 252 0 0 0 chr6 140891048 140891076 -41524166 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 270 0 0 0 chr6 140891075 140891105 -41524137 + (GA)n Simple_repeat Simple_repeat 1 30 0 628 235 176 0 chr6 140891186 140891339 -41523903 - MER5A DNA MER1_type 0 189 10 243 271 94 0 chr6 140891400 140891485 -41523757 + MIR SINE MIR 86 178 -84 641 228 16 0 chr6 140892886 140893009 -41522233 + FLAM_A SINE Alu 1 125 -8 2009 143 0 10 chr6 140894023 140894323 -41520919 + AluSx SINE Alu 1 297 -15 423 0 0 0 chr6 140895486 140895533 -41519709 + (TG)n Simple_repeat Simple_repeat 2 48 0 1029 269 20 66 chr6 140895613 140896022 -41519220 + L2 LINE L2 2912 3301 -12 953 79 0 0 chr6 140896036 140896162 -41519080 + L1PA12 LINE L1 6043 6168 0 27 49 0 0 chr6 140896393 140896434 -41518808 + AT_rich Low_complexity Low_complexity 1 41 0 2046 184 3 0 chr6 140896797 140897144 -41518098 - MER7A DNA MER2_type 0 346 1 23 54 0 0 chr6 140897237 140897274 -41517968 + AT_rich Low_complexity Low_complexity 1 37 0 414 0 0 0 chr6 140897510 140897556 -41517686 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 70 0 0 chr6 140897670 140897713 -41517529 + AT_rich Low_complexity Low_complexity 1 43 0 2115 112 0 7 chr6 140897912 140898221 -41517021 - AluSx SINE Alu 0 307 1 720 183 0 0 chr6 140898256 140898371 -41516871 + AluJo/FLAM SINE Alu 2 116 -186 2190 95 3 10 chr6 140898374 140898669 -41516573 - AluSp SINE Alu -20 293 1 29 28 0 0 chr6 140898671 140898707 -41516535 + AT_rich Low_complexity Low_complexity 1 36 0 344 307 0 0 chr6 140899345 140899420 -41515822 + L1PA15-16 LINE L1 982 1056 -5793 * 4686 204 32 11 chr6 140899397 140900317 -41514925 - L1PA15-16 LINE L1 -5319 1530 499 1837 152 3 0 chr6 140901112 140901409 -41513833 + MER47A DNA MER2_type 1 298 -68 748 214 0 35 chr6 140901409 140901554 -41513688 + FAM SINE Alu 1 140 -45 414 235 0 0 chr6 140901579 140901660 -41513582 + MER47A DNA MER2_type 285 365 -1 41 48 0 0 chr6 140901827 140901889 -41513353 + AT_rich Low_complexity Low_complexity 1 62 0 249 261 11 76 chr6 140901962 140902039 -41513203 + L1ME LINE L1 491 563 -5967 2408 120 0 47 chr6 140902039 140902421 -41512821 - THE1B LTR MaLR 0 364 1 249 261 11 76 chr6 140902421 140902435 -41512807 + L1ME LINE L1 563 576 -5954 235 313 8 15 chr6 140903097 140903231 -41512011 + L1ME LINE L1 928 1060 -5480 1339 199 93 64 chr6 140903323 140904086 -41511156 + L1ME LINE L1 2122 2906 -3634 23 54 0 0 chr6 140907125 140907162 -41508080 + AT_rich Low_complexity Low_complexity 1 37 0 509 182 30 0 chr6 140907163 140907262 -41507980 + L1ME LINE L1 2893 2994 -3546 371 295 19 0 chr6 140907262 140907367 -41507875 + U6 snRNA snRNA 1 107 0 2582 276 60 30 chr6 140907383 140908792 -41506450 + L1ME LINE L1 2979 4429 -2111 404 247 0 0 chr6 140908792 140908869 -41506373 - Tigger3(Golem) DNA MER2_type 0 3029 2953 1103 165 123 60 chr6 140908871 140909026 -41506216 - Tigger3(Golem) DNA MER2_type -780 2248 2104 1728 187 0 3 chr6 140909026 140909332 -41505910 + AluSx SINE Alu 1 305 0 1103 165 123 60 chr6 140909332 140909586 -41505656 - Tigger3(Golem) DNA MER2_type -924 2104 2 902 281 19 13 chr6 140909589 140909902 -41505340 + L1ME LINE L1 4419 4733 -1807 2561 186 54 4 chr6 140909902 140910398 -41504844 + Tigger1 DNA MER2_type 1 521 -1897 291 360 24 6 chr6 140910410 140910574 -41504668 + MERVL LTR ERVL 3372 3538 -1947 25 65 0 0 chr6 140912061 140912107 -41503135 + AT_rich Low_complexity Low_complexity 1 46 0 667 177 16 16 chr6 140912107 140912231 -41503011 - FLAM_C SINE Alu -9 124 1 21 36 0 0 chr6 140912413 140912441 -41502801 + AT_rich Low_complexity Low_complexity 1 28 0 311 209 0 82 chr6 140913150 140913260 -41501982 - LTR67 LTR ERVL 0 557 457 2315 96 0 3 chr6 140913442 140913755 -41501487 - AluSx SINE Alu 0 312 1 225 333 41 41 chr6 140914975 140915098 -41500144 - MER5A DNA MER1_type -14 175 53 384 279 51 44 chr6 140915223 140915381 -41499861 - MER103 DNA DNA 0 166 8 2145 104 6 50 chr6 140916097 140916414 -41498828 - AluSx SINE Alu -9 303 1 246 105 0 0 chr6 140917225 140917263 -41497979 + (CA)n Simple_repeat Simple_repeat 2 39 0 3088 133 82 8 chr6 140917500 140917990 -41497252 + MER1A DNA MER1_type 2 527 0 2425 64 10 0 chr6 140918288 140918584 -41496658 + AluY SINE Alu 1 299 -12 353 281 122 22 chr6 140918703 140918842 -41496400 - MER91A DNA MER1_type -43 153 1 2334 91 0 7 chr6 140919423 140919720 -41495522 - AluSg SINE Alu -15 295 1 234 304 78 20 chr6 140919822 140919924 -41495318 - MIR3 SINE MIR -50 158 51 1543 109 46 70 chr6 140920482 140920767 -41494475 - AluSx SINE Alu 0 312 35 400 207 166 53 chr6 140920942 140921111 -41494131 + L2 LINE L2 3126 3313 0 639 125 19 10 chr6 140922067 140922171 -41493071 + AluSg/x SINE Alu 192 296 -16 419 82 38 65 chr6 140922243 140922692 -41492550 + (TA)n Simple_repeat Simple_repeat 1 436 0 2390 106 0 0 chr6 140923735 140924047 -41491195 - AluSx SINE Alu 0 312 1 14490 130 28 14 chr6 140924727 140926261 -41488981 - Tigger1 DNA MER2_type 0 2418 836 1986 130 3 46 chr6 140926261 140926584 -41488658 - AluSx SINE Alu -3 309 1 14490 130 28 14 chr6 140926584 140927433 -41487809 - Tigger1 DNA MER2_type -1582 836 1 22 35 0 0 chr6 140927522 140927551 -41487691 + AT_rich Low_complexity Low_complexity 1 29 0 2210 173 32 0 chr6 140927552 140928104 -41487138 - L1PA16 LINE L1 -722 5444 4865 4677 117 18 8 chr6 140928104 140928832 -41486410 + L1PA16 LINE L1 5421 6156 -10 2210 173 32 0 chr6 140928832 140928843 -41486399 - L1P4 LINE L1 -1301 4865 4856 26 0 0 0 chr6 140928871 140928897 -41486345 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr6 140929592 140929615 -41485627 + AT_rich Low_complexity Low_complexity 1 23 0 1694 183 7 3 chr6 140930270 140930560 -41484682 + AluSx SINE Alu 1 291 -21 2104 117 3 17 chr6 140930656 140930956 -41484286 - AluSx SINE Alu -16 296 1 181 315 87 11 chr6 140931143 140931235 -41484007 + L2 LINE L2 2968 3066 -247 1221 140 0 0 chr6 140931306 140931485 -41483757 + AluJb SINE Alu 4 182 -130 21 0 0 0 chr6 140931711 140931732 -41483510 + AT_rich Low_complexity Low_complexity 1 21 0 296 234 97 90 chr6 140932018 140932167 -41483075 + HAL1 LINE L1 816 969 -1538 315 0 0 0 chr6 140932167 140932202 -41483040 + (CA)n Simple_repeat Simple_repeat 2 36 0 296 234 97 90 chr6 140932202 140932342 -41482900 + HAL1 LINE L1 969 1107 -1400 360 228 22 88 chr6 140932344 140932480 -41482762 + MLT1E2 LTR MaLR 1 127 -499 1022 279 119 22 chr6 140932490 140932992 -41482250 + HAL1 LINE L1 1247 1797 -710 2870 271 119 13 chr6 140933544 140934505 -41480737 + L2 LINE L2 1983 3116 -197 399 21 0 0 chr6 140934505 140934553 -41480689 + (CA)n Simple_repeat Simple_repeat 1 48 0 2870 271 119 13 chr6 140934553 140934760 -41480482 + L2 LINE L2 3116 3300 -13 419 155 14 0 chr6 140935510 140935581 -41479661 + U4 snRNA snRNA 1 72 -73 1557 204 7 3 chr6 140935606 140935905 -41479337 + AluJo SINE Alu 2 301 -11 1711 139 51 14 chr6 140936382 140936677 -41478565 + AluJb SINE Alu 1 306 -6 23 0 0 0 chr6 140937046 140937069 -41478173 + AT_rich Low_complexity Low_complexity 1 23 0 659 176 0 8 chr6 140938493 140938632 -41476610 - FLAM_C SINE Alu 0 138 1 806 178 0 37 chr6 140939047 140939210 -41476032 + FRAM SINE Alu 1 40 0 180 0 0 0 chr6 140939210 140939230 -41476012 + (TA)n Simple_repeat Simple_repeat 2 21 0 663 148 17 9 chr6 140939521 140939636 -41475606 + FLAM_A SINE Alu 6 121 -21 25 0 0 0 chr6 140939649 140939674 -41475568 + AT_rich Low_complexity Low_complexity 1 25 0 1423 134 79 76 chr6 140939752 140940043 -41475199 + AluJb SINE Alu 1 292 -20 197 132 0 57 chr6 140940471 140940524 -41474718 + (A)n Simple_repeat Simple_repeat 1 50 0 243 262 49 138 chr6 140941628 140941818 -41473424 - MIR SINE MIR -56 206 26 1067 154 6 16 chr6 140942299 140942481 -41472761 + AluJo SINE Alu 56 235 -77 2321 132 19 8 chr6 140942481 140942844 -41472398 - PABL_A-int LTR ERV1 -4591 424 58 1334 96 45 10 chr6 140942849 140943048 -41472194 - PABL_B LTR ERV1 -460 207 2 445 136 0 12 chr6 140943048 140943129 -41472113 + AluJo SINE Alu 232 311 -1 243 300 88 0 chr6 140943498 140943578 -41471664 + MER5B DNA MER1_type 53 139 -39 938 91 7 63 chr6 140943578 140943721 -41471521 + AluSq/x SINE Alu 1 135 -178 1798 154 14 0 chr6 140943721 140944040 -41471202 + AluSq SINE Alu 1 323 0 1397 191 62 13 chr6 140944476 140944785 -41470457 + MLT2C1 LTR ERVL 1 324 -73 271 108 0 0 chr6 140944915 140944952 -41470290 - tRNA-Arg-AGA tRNA tRNA -39 37 1 1732 129 85 52 chr6 140945053 140945416 -41469826 - THE1C LTR MaLR 0 375 1 213 309 103 24 chr6 140945617 140945743 -41469499 + MIR3 SINE MIR 35 170 -38 1751 156 12 55 chr6 140945963 140946289 -41468953 + AluJo SINE Alu 1 312 0 590 224 55 6 chr6 140947229 140947394 -41467848 + Cheshire DNA MER1_type 1984 2156 -264 370 325 16 8 chr6 140947834 140947960 -41467282 + L2 LINE L2 3183 3309 -4 216 392 67 8 chr6 140948180 140948300 -41466942 - L2 LINE L2 -12 3260 3134 246 281 62 47 chr6 140948437 140948565 -41466677 + HAL1 LINE L1 519 648 -1859 * 922 252 31 20 chr6 140948559 140948813 -41466429 + HAL1 LINE L1 573 829 -1678 1638 134 36 2 chr6 140949073 140949337 -41465905 + MLT1B LTR MaLR 127 389 -1 492 237 0 8 chr6 140949717 140949835 -41465407 + L1M4 LINE L1 3736 3852 -2294 183 80 0 0 chr6 140951127 140951152 -41464090 + (T)n Simple_repeat Simple_repeat 1 25 0 1238 243 98 56 chr6 140951950 140952325 -41462917 - L1MC4a LINE L1 -1898 5910 5505 2484 77 0 0 chr6 140952325 140952636 -41462606 - AluY SINE Alu 0 311 1 1238 243 98 56 chr6 140952636 140952779 -41462463 - L1MC4a LINE L1 -2303 5505 5370 21 57 0 0 chr6 140953326 140953361 -41461881 + AT_rich Low_complexity Low_complexity 1 35 0 995 247 211 60 chr6 140953868 140954383 -41460859 - MLT1G1 LTR MaLR -12 543 1 2014 131 77 11 chr6 140954598 140954948 -41460294 - THE1C LTR MaLR 0 375 3 235 189 0 0 chr6 140956056 140956093 -41459149 + Alu SINE Alu 1 37 -262 1014 124 45 0 chr6 140957126 140957303 -41457939 - L1MA8 LINE L1 -104 6187 6003 1713 179 3 3 chr6 140957375 140957672 -41457570 + AluJb SINE Alu 1 297 -15 1362 189 44 51 chr6 140957888 140958184 -41457058 + AluJo SINE Alu 1 294 -18 267 337 47 0 chr6 140959196 140959282 -41455960 - L2 LINE L2 -1 3312 3223 437 303 91 29 chr6 140959289 140959497 -41455745 - L2 LINE L2 -852 2462 2242 821 175 209 6 chr6 140959540 140959717 -41455525 - MER58A DNA MER1_type -11 213 1 251 333 43 32 chr6 140960343 140960436 -41454806 - MIR SINE MIR -163 99 6 66 0 0 0 chr6 140961347 140961413 -41453829 + AT_rich Low_complexity Low_complexity 1 66 0 1845 175 0 7 chr6 140961631 140961940 -41453302 - AluJb SINE Alu -5 307 1 351 277 145 24 chr6 140962177 140962343 -41452899 + MIR3 SINE MIR 16 201 -7 21 36 0 0 chr6 140962749 140962777 -41452465 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr6 140962941 140962973 -41452269 + (T)n Simple_repeat Simple_repeat 1 32 0 300 169 0 0 chr6 140963333 140963410 -41451832 + T-rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr6 140965473 140965495 -41449747 + AT_rich Low_complexity Low_complexity 1 22 0 348 83 0 0 chr6 140968714 140968762 -41446480 + (TA)n Simple_repeat Simple_repeat 1 48 0 226 149 21 0 chr6 140968772 140968819 -41446423 - L1MC4 LINE L1 -1339 6703 6656 618 89 0 0 chr6 140968880 140968970 -41446272 + AluSg/x SINE Alu 214 303 -6 260 389 60 0 chr6 140968978 140969127 -41446115 - L2 LINE L2 -205 3067 2910 864 110 0 0 chr6 140969771 140969889 -41445353 + FLAM_C SINE Alu 1 118 -25 25 0 0 0 chr6 140970193 140970218 -41445024 + AT_rich Low_complexity Low_complexity 1 25 0 188 35 35 0 chr6 140970316 140970345 -41444897 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr6 140970908 140970934 -41444308 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1707 111 0 0 chr6 140970936 140971161 -41444081 - AluSq SINE Alu -35 278 54 265 192 50 61 chr6 140971306 140971405 -41443837 - L1MC5 LINE L1 -143 7818 7721 36 23 0 0 chr6 140971532 140971575 -41443667 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 140972211 140972232 -41443010 + AT_rich Low_complexity Low_complexity 1 21 0 245 242 0 16 chr6 140972348 140972410 -41442832 + 7SK RNA RNA 12 72 -121 22 56 0 0 chr6 140973363 140973399 -41441843 + AT_rich Low_complexity Low_complexity 1 36 0 500 232 167 30 chr6 140974352 140974550 -41440692 - L2 LINE L2 -44 3269 3045 234 236 55 0 chr6 140974554 140974609 -41440633 - L2 LINE L2 -50 3222 3165 22 56 0 0 chr6 140975793 140975829 -41439413 + AT_rich Low_complexity Low_complexity 1 36 0 5095 190 112 20 chr6 140976497 140977821 -41437421 - Charlie1a DNA MER1_type -9 1446 1 25 0 0 0 chr6 140978541 140978566 -41436676 + AT_rich Low_complexity Low_complexity 1 25 0 846 189 6 12 chr6 140978569 140978733 -41436509 + FRAM SINE Alu 1 163 -13 851 185 56 11 chr6 140979179 140979357 -41435885 - MER5A DNA MER1_type -3 186 1 469 315 42 24 chr6 140979521 140979686 -41435556 - MIR3 SINE MIR -31 177 10 1943 121 22 35 chr6 140980359 140980673 -41434569 - AluJb SINE Alu -2 310 1 261 315 130 0 chr6 140980684 140980776 -41434466 - L2 LINE L2 0 3313 3210 2450 80 0 0 chr6 140980971 140981282 -41433960 - AluY SINE Alu 0 311 1 24 0 0 0 chr6 140982619 140982643 -41432599 + AT_rich Low_complexity Low_complexity 1 24 0 315 0 0 0 chr6 140983636 140983671 -41431571 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 348 264 208 13 chr6 140983680 140983911 -41431331 - L1MC4a LINE L1 -1911 5897 5622 23 0 0 0 chr6 140984606 140984629 -41430613 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr6 140984731 140984782 -41430460 + AT_rich Low_complexity Low_complexity 1 51 0 188 312 40 56 chr6 140986498 140986623 -41428619 + L2 LINE L2 2968 3090 -182 26 50 0 0 chr6 140986627 140986667 -41428575 + AT_rich Low_complexity Low_complexity 1 40 0 2220 109 3 0 chr6 140987199 140987492 -41427750 + AluSc SINE Alu 1 294 -15 2111 107 34 0 chr6 140987560 140987851 -41427391 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr6 140987927 140987948 -41427294 + AT_rich Low_complexity Low_complexity 1 21 0 226 263 79 0 chr6 140988221 140988297 -41426945 - MER112 DNA MER1_type -6 254 173 223 286 12 12 chr6 140988374 140988458 -41426784 - L2 LINE L2 -1048 2266 2183 261 302 12 0 chr6 140989238 140989324 -41425918 + L3 LINE CR1 883 969 -608 548 296 102 44 chr6 140989387 140989748 -41425494 + L3 LINE CR1 1107 1488 -89 219 233 17 17 chr6 140990356 140990416 -41424826 + (TA)n Simple_repeat Simple_repeat 1 60 0 30 27 0 0 chr6 140991575 140991612 -41423630 + AT_rich Low_complexity Low_complexity 1 37 0 2368 65 3 20 chr6 140992057 140992363 -41422879 - AluY SINE Alu -10 301 1 679 199 149 0 chr6 140992790 140992951 -41422291 + MER3 DNA MER1_type 3 187 -22 1672 148 75 0 chr6 140993465 140993626 -41421616 - AluJb SINE Alu -13 299 152 306 0 0 0 chr6 140993626 140993660 -41421582 + (TG)n Simple_repeat Simple_repeat 2 35 0 1672 148 75 0 chr6 140993660 140993776 -41421466 - AluJb SINE Alu -160 152 1 312 188 87 0 chr6 140993910 140993979 -41421263 - MIR SINE MIR -107 155 81 306 0 0 0 chr6 140994079 140994113 -41421129 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr6 140995486 140995514 -41419728 + AT_rich Low_complexity Low_complexity 1 28 0 186 103 0 0 chr6 140995633 140995662 -41419580 + (TG)n Simple_repeat Simple_repeat 2 30 0 262 323 81 16 chr6 140996718 140996842 -41418400 + MIR3 SINE MIR 9 140 -68 407 45 197 0 chr6 140997932 140997998 -41417244 - MADE1 DNA Mariner 0 80 2 257 333 69 39 chr6 140998294 140998525 -41416717 + L1ME LINE L1 5590 5827 -294 183 42 0 0 chr6 140998595 140998619 -41416623 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 240 35 0 0 chr6 140998618 140998647 -41416595 + (CA)n Simple_repeat Simple_repeat 1 29 0 181 389 26 26 chr6 140999490 140999603 -41415639 + L2 LINE L2 3152 3264 -8 198 91 0 0 chr6 140999674 140999707 -41415535 + (TCTCTG)n Simple_repeat Simple_repeat 1 33 0 236 254 27 64 chr6 140999868 140999978 -41415264 + MIR SINE MIR 157 262 0 1725 195 60 85 chr6 141000360 141000550 -41414692 - L1ME1 LINE L1 -135 6031 5838 2079 121 3 10 chr6 141000550 141000857 -41414385 - AluSx SINE Alu -7 305 1 1725 195 60 85 chr6 141000857 141001221 -41414021 - L1ME1 LINE L1 -328 5838 5491 356 284 178 15 chr6 141001907 141002104 -41413138 - MIR SINE MIR -5 257 29 182 361 62 28 chr6 141002340 141002484 -41412758 - L2 LINE L2 -218 3054 2906 383 297 103 7 chr6 141003531 141003676 -41411566 + MIR SINE MIR 18 176 -86 25 0 0 0 chr6 141003975 141004000 -41411242 + AT_rich Low_complexity Low_complexity 1 25 0 306 328 157 0 chr6 141005920 141006118 -41409124 - MIR SINE MIR 0 262 34 567 173 109 0 chr6 141006326 141006436 -41408806 + L2 LINE L2 3192 3313 0 232 322 119 27 chr6 141006921 141007182 -41408060 - L1M4 LINE L1 -1313 4833 4549 353 324 32 38 chr6 141007320 141007505 -41407737 - L3 LINE CR1 -331 1246 1063 798 297 147 24 chr6 141007534 141007914 -41407328 - L3 LINE CR1 -881 696 270 1675 184 39 82 chr6 141008187 141008675 -41406567 - MLT1C LTR MaLR 0 467 1 2281 91 0 28 chr6 141008734 141009053 -41406189 + AluSg SINE Alu 1 310 0 242 319 43 52 chr6 141010099 141010215 -41405027 - MIR SINE MIR -69 139 25 233 279 16 31 chr6 141010776 141010905 -41404337 - L1MCa LINE L1 -4943 1483 1357 207 0 0 0 chr6 141010947 141010970 -41404272 + (TTG)n Simple_repeat Simple_repeat 1 23 0 1886 212 69 9 chr6 141011605 141012068 -41403174 - L1MC4a LINE L1 -250 7558 7068 456 128 18 101 chr6 141012157 141012206 -41403036 - L1MA10 LINE L1 -14 6320 6283 2207 98 0 7 chr6 141012206 141012501 -41402741 - AluSg SINE Alu -17 293 1 456 128 18 101 chr6 141012501 141012560 -41402682 - L1MA10 LINE L1 -51 6283 6221 6515 151 59 29 chr6 141012693 141014236 -41401006 + L1MA2 LINE L1 4989 6082 -222 204 67 0 0 chr6 141014236 141014266 -41400976 + (TG)n Simple_repeat Simple_repeat 2 31 0 6515 151 59 29 chr6 141014266 141014496 -41400746 + L1MA2 LINE L1 6082 6304 0 1398 127 10 5 chr6 141014517 141014722 -41400520 + AluJb SINE Alu 9 214 -98 509 183 0 0 chr6 141014741 141014823 -41400419 - AluJb SINE Alu -88 224 143 661 222 79 0 chr6 141014855 141015044 -41400198 + L1MC4 LINE L1 6918 7121 -921 1927 136 27 3 chr6 141015176 141015470 -41399772 - AluJo SINE Alu -11 301 1 29 0 0 0 chr6 141016983 141017012 -41398230 + AT_rich Low_complexity Low_complexity 1 29 0 1886 166 0 3 chr6 141017318 141017608 -41397634 + AluJo SINE Alu 1 289 -23 2319 116 0 0 chr6 141018285 141018596 -41396646 + AluSx SINE Alu 1 311 -1 2599 41 0 19 chr6 141018610 141018926 -41396316 + AluY SINE Alu 1 310 -1 2711 188 18 14 chr6 141019216 141019716 -41395526 - MLT2B1 LTR ERVL -18 502 1 1724 157 3 26 chr6 141019888 141020194 -41395048 - AluSx SINE Alu -13 299 1 191 286 48 16 chr6 141020209 141020272 -41394970 - MIR SINE MIR -109 153 89 861 116 0 8 chr6 141020570 141020691 -41394551 + AluJb SINE Alu 14 133 -179 1907 156 17 10 chr6 141020694 141021019 -41394223 + AluSx SINE Alu 1 312 0 1621 114 27 0 chr6 141021613 141021875 -41393367 - L1MA5A LINE L1 -6 6291 6023 1755 127 89 0 chr6 141022962 141023221 -41392021 + AluSg SINE Alu 1 306 0 217 0 0 0 chr6 141023221 141023245 -41391997 + (TAAA)n Simple_repeat Simple_repeat 2 88 0 21 0 0 0 chr6 141023268 141023289 -41391953 + AT_rich Low_complexity Low_complexity 1 21 0 472 281 96 11 chr6 141023417 141023595 -41391647 - L1ME4a LINE L1 -224 5897 5705 6573 78 10 8 chr6 141024300 141025397 -41389845 + L1PA8 LINE L1 5069 6170 -2 311 167 58 25 chr6 141025425 141025545 -41389697 + (TA)n Simple_repeat Simple_repeat 2 125 0 350 261 7 124 chr6 141026171 141026322 -41388920 + MER5B DNA MER1_type 1 146 -43 417 161 46 35 chr6 141026322 141026409 -41388833 - MER5A DNA MER1_type 0 189 102 1669 175 54 3 chr6 141027104 141027401 -41387841 - AluJb SINE Alu 0 312 1 23 54 0 0 chr6 141027405 141027442 -41387800 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr6 141027532 141027568 -41387674 + AT_rich Low_complexity Low_complexity 1 36 0 204 163 0 0 chr6 141027920 141027963 -41387279 + CT-rich Low_complexity Low_complexity 2 44 0 504 254 48 38 chr6 141028058 141028267 -41386975 - L1ME4a LINE L1 -238 5883 5673 266 289 26 13 chr6 141028769 141028845 -41386397 + MER5A DNA MER1_type 113 189 0 1921 163 0 3 chr6 141031120 141031427 -41383815 + AluJb SINE Alu 1 306 0 495 291 11 6 chr6 141031857 141032039 -41383203 - LTR67 LTR ERVL -7 550 368 277 241 115 55 chr6 141032425 141032678 -41382564 + L1MC4a LINE L1 5790 6057 -1751 1540 176 112 29 chr6 141032912 141033259 -41381983 - LTR32 LTR ERVL -82 389 14 319 296 27 16 chr6 141033259 141033445 -41381797 - HAL1 LINE L1 -295 2212 2025 * 30038 106 12 61 chr6 141033435 141036227 -41379015 - L1PA7 LINE L1 -6 6148 3221 2945 6 0 0 chr6 141036227 141036545 -41378697 + AluYb8 SINE Alu 1 318 0 30038 106 12 61 chr6 141036545 141040214 -41375028 - L1PA7 LINE L1 -2933 3221 13 254 250 60 0 chr6 141040399 141040499 -41374743 + L1MC4a LINE L1 6566 6671 -1137 761 236 30 65 chr6 141040527 141040980 -41374262 - MLT1A1 LTR MaLR 0 365 1 346 254 27 36 chr6 141041013 141041123 -41374119 + L1MC4 LINE L1 6888 6996 -1046 332 315 136 26 chr6 141041254 141041663 -41373579 + L1MC4 LINE L1 6999 7458 -584 227 260 180 0 chr6 141041669 141041769 -41373473 + L1MC5 LINE L1 7308 7425 -536 368 353 78 19 chr6 141041830 141042099 -41373143 + L1MC4 LINE L1 7606 7890 -152 21 0 0 0 chr6 141042131 141042152 -41373090 + AT_rich Low_complexity Low_complexity 1 21 0 2048 139 3 7 chr6 141042173 141042482 -41372760 + AluSx SINE Alu 1 308 -4 2794 10 0 0 chr6 141042544 141042850 -41372392 + AluYa5 SINE Alu 1 306 -5 2117 169 106 9 chr6 141043024 141043450 -41371792 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr6 141043971 141043992 -41371250 + AT_rich Low_complexity Low_complexity 1 21 0 375 41 0 0 chr6 141044350 141044399 -41370843 + (CA)n Simple_repeat Simple_repeat 2 50 0 195 42 0 0 chr6 141044398 141044422 -41370820 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 246 217 29 14 chr6 141045210 141045279 -41369963 + CT-rich Low_complexity Low_complexity 4 73 0 182 254 90 45 chr6 141045451 141045518 -41369724 + L2 LINE L2 3240 3309 -4 2562 56 0 0 chr6 141045911 141046230 -41369012 - L1PA6 LINE L1 -5 6149 5831 35368 81 19 10 chr6 141046230 141051971 -41363271 + L1PA6 LINE L1 33 5822 -332 4614 100 44 1 chr6 141053178 141053838 -41361404 + LTR12 LTR ERV1 1 688 0 765 289 103 34 chr6 141053898 141054316 -41360926 - LTR33 LTR ERVL -52 469 23 182 224 90 0 chr6 141054374 141054441 -41360801 - MIR SINE MIR -70 192 120 482 296 47 101 chr6 141054465 141054635 -41360607 + L1M4 LINE L1 3843 3990 -2156 2082 133 0 7 chr6 141054635 141054929 -41360313 - AluSx SINE Alu -16 296 5 482 296 47 101 chr6 141054929 141055075 -41360167 + L1M4 LINE L1 3990 4142 -2004 870 219 149 93 chr6 141055102 141055397 -41359845 + MSTD LTR MaLR 1 323 -73 4276 148 14 9 chr6 141055397 141056168 -41359074 + L1MA4 LINE L1 5526 6300 0 870 219 149 93 chr6 141056168 141056247 -41358995 + MSTD LTR MaLR 323 396 0 340 292 134 13 chr6 141056334 141056721 -41358521 + L1M4 LINE L1 4266 4699 -1447 759 240 58 19 chr6 141056895 141057220 -41358022 + L1M4 LINE L1 4913 5250 -896 3988 242 33 56 chr6 141057254 141060994 -41354248 + L1PB4 LINE L1 131 3629 -3220 * 3997 157 11 34 chr6 141060969 141061201 -41354041 + L1PB4 LINE L1 5183 5419 -1440 2339 99 3 0 chr6 141061201 141061505 -41353737 + AluSg SINE Alu 5 309 -1 3997 157 11 34 chr6 141061505 141062311 -41352931 + L1PB4 LINE L1 5419 6192 -667 6588 80 5 1 chr6 141062311 141063610 -41351632 + L1PA14 LINE L1 4854 6152 -9 3967 141 12 5 chr6 141063646 141064318 -41350924 + L1PB4 LINE L1 6182 6858 -1 242 275 67 20 chr6 141064473 141064622 -41350620 + L1ME3 LINE L1 5100 5255 -891 * 422 313 110 19 chr6 141064607 141065026 -41350216 + L1ME3 LINE L1 5481 5937 -225 2570 150 95 10 chr6 141065304 141065871 -41349371 - MER4B LTR ERV1 0 779 1 379 346 92 32 chr6 141065916 141066133 -41349109 + MIR SINE MIR 13 242 -20 244 286 50 75 chr6 141066209 141066370 -41348872 + L2 LINE L2 3116 3272 -41 202 333 0 0 chr6 141066443 141066497 -41348745 - MIR SINE MIR -160 102 49 3048 150 170 36 chr6 141066650 141067378 -41347864 - LTR1B LTR ERV1 0 826 1 761 179 107 6 chr6 141067378 141067546 -41347696 + MER20 DNA MER1_type 35 219 0 614 268 60 27 chr6 141068469 141068652 -41346590 + MIR SINE MIR 58 246 -16 4183 68 15 0 chr6 141068660 141069206 -41346036 - MER41A LTR ERV1 0 554 1 466 100 0 0 chr6 141069290 141069360 -41345882 + LTR7 LTR ERV1 1 70 -380 589 77 0 0 chr6 141069365 141069456 -41345786 + HERVH LTR ERV1 642 732 -6981 14666 89 34 20 chr6 141069458 141071803 -41343439 + HERVH LTR ERV1 609 2987 -4726 897 133 7 0 chr6 141071797 141071947 -41343295 + HERVH LTR ERV1 3140 3290 -4423 * 3254 109 0 6 chr6 141071937 141072442 -41342800 + HERVH LTR ERV1 3492 3993 -3720 4083 142 1 3 chr6 141072444 141073107 -41342135 + HERVH LTR ERV1 4488 5149 -2564 1240 132 33 0 chr6 141073108 141073321 -41341921 + HERVH LTR ERV1 5600 5819 -1894 2335 82 45 13 chr6 141073321 141073699 -41341543 + HERVH LTR ERV1 7324 7713 0 3367 71 0 7 chr6 141073699 141074150 -41341092 + LTR7 LTR ERV1 1 448 -2 333 0 0 0 chr6 141074518 141074555 -41340687 + (TA)n Simple_repeat Simple_repeat 2 38 0 199 426 47 8 chr6 141074558 141074687 -41340555 + L2 LINE L2 3138 3271 -1 237 259 17 0 chr6 141075223 141075281 -41339961 + MIR SINE MIR 86 144 -64 290 268 21 21 chr6 141075499 141075578 -41339664 + CT-rich Low_complexity Low_complexity 4 85 -15 1777 152 0 11 chr6 141075578 141075855 -41339387 - AluJb SINE Alu -38 274 1 290 268 21 21 chr6 141075855 141075872 -41339370 + CT-rich Low_complexity Low_complexity 84 100 0 570 286 116 47 chr6 141076179 141076447 -41338795 - MLT1L LTR MaLR -14 601 290 2107 131 35 30 chr6 141076447 141076820 -41338422 - THE1C LTR MaLR 0 375 1 570 286 116 47 chr6 141076820 141076981 -41338261 - MLT1L LTR MaLR -325 290 142 829 253 64 11 chr6 141077224 141077489 -41337753 + L2 LINE L2 2139 2417 -897 5041 207 32 24 chr6 141077491 141079462 -41335780 + L1MA7 LINE L1 4297 6285 -6 2039 87 8 0 chr6 141079707 141079972 -41335270 - AluSx SINE Alu -45 267 1 726 288 25 62 chr6 141080049 141080362 -41334880 - L1MC5 LINE L1 -903 6905 6610 243 0 0 0 chr6 141080362 141080389 -41334853 + (TG)n Simple_repeat Simple_repeat 2 28 0 726 288 25 62 chr6 141080389 141080508 -41334734 - L1MC5 LINE L1 -1198 6610 6488 315 296 154 6 chr6 141080924 141081093 -41334149 - HAL1b LINE L1 -613 735 542 1173 90 24 0 chr6 141081096 141081263 -41333979 + L1MA7 LINE L1 5690 5860 -431 232 321 40 48 chr6 141081292 141081541 -41333701 - L1M4c LINE L1 -4734 1650 1404 5362 152 24 7 chr6 141082299 141083256 -41331986 - L1MA8 LINE L1 0 6291 5319 24 24 0 24 chr6 141085429 141085443 -41329799 + AT_rich Low_complexity Low_complexity 1 14 -27 189 0 0 0 chr6 141085443 141085464 -41329778 + (CA)n Simple_repeat Simple_repeat 2 22 0 24 24 0 24 chr6 141085464 141085491 -41329751 + AT_rich Low_complexity Low_complexity 14 41 0 183 80 0 0 chr6 141087944 141087969 -41327273 + (A)n Simple_repeat Simple_repeat 1 25 0 245 346 39 0 chr6 141092446 141092550 -41322692 + MIR SINE MIR 30 137 -71 23 0 0 0 chr6 141092783 141092806 -41322436 + AT_rich Low_complexity Low_complexity 1 23 0 1807 136 0 67 chr6 141092850 141093166 -41322076 - AluJb SINE Alu -17 295 1 290 276 93 41 chr6 141094076 141094240 -41321002 - MIR SINE MIR -50 212 40 519 226 32 105 chr6 141096452 141096642 -41318600 + MIR SINE MIR 82 257 -5 195 162 0 0 chr6 141097257 141097294 -41317948 + GA-rich Low_complexity Low_complexity 1 37 0 275 132 13 40 chr6 141097712 141097788 -41317454 + (TA)n Simple_repeat Simple_repeat 2 75 0 2202 117 117 5 chr6 141097961 141098346 -41316896 + MSTA LTR MaLR 1 428 0 2466 50 0 3 chr6 141098384 141098683 -41316559 - AluY SINE Alu -13 298 1 682 271 88 0 chr6 141099163 141099355 -41315887 - MER3 DNA MER1_type 0 209 1 305 311 193 66 chr6 141099700 141100740 -41314502 + L2 LINE L2 1606 2777 -537 1692 181 20 7 chr6 141100927 141101219 -41314023 - AluJo SINE Alu -16 296 1 247 258 82 0 chr6 141101280 141101377 -41313865 + MER112 DNA MER1_type 68 172 -88 268 111 32 0 chr6 141101442 141101505 -41313737 + (TA)n Simple_repeat Simple_repeat 2 66 0 24 53 0 0 chr6 141102387 141102425 -41312817 + AT_rich Low_complexity Low_complexity 1 38 0 186 375 98 9 chr6 141102752 141102864 -41312378 - L2 LINE L2 -13 3300 3179 182 287 156 49 chr6 141102802 141102924 -41312318 - MER5B DNA MER1_type -41 137 3 * 225 0 0 0 chr6 141103434 141103459 -41311783 + (CA)n Simple_repeat Simple_repeat 2 26 0 225 65 0 0 chr6 141103855 141103886 -41311356 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 447 73 134 0 chr6 141103938 141104020 -41311222 - L1MA4A LINE L1 -3 6300 6208 232 176 14 27 chr6 141104020 141104094 -41311148 + L1MA4A LINE L1 6221 6293 -10 1184 141 15 10 chr6 141104114 141104320 -41310922 - L1MA4A LINE L1 -98 6205 5999 420 374 167 0 chr6 141104365 141104611 -41310631 + L2 LINE L2 2983 3269 -3 276 261 154 31 chr6 141105337 141105467 -41309775 - MIR SINE MIR -57 205 60 605 38 0 25 chr6 141105993 141106072 -41309170 + L1PA8 LINE L1 6089 6165 -7 264 296 0 37 chr6 141108252 141108333 -41306909 - MIR SINE MIR -106 102 25 355 286 152 13 chr6 141108491 141108715 -41306527 + MIR SINE MIR 8 262 0 196 260 27 27 chr6 141109434 141109507 -41305735 - MIR SINE MIR -122 140 68 321 284 98 15 chr6 141109778 141109977 -41305265 + L1ME LINE L1 863 1076 -5855 241 67 0 0 chr6 141110096 141110126 -41305116 + LTR6A LTR ERV1 73 102 -462 441 276 78 22 chr6 141110565 141110898 -41304344 + L1ME LINE L1 1232 1536 -4887 2403 100 0 0 chr6 141110899 141111209 -41304033 + AluSx SINE Alu 1 310 -2 394 279 50 43 chr6 141112436 141112597 -41302645 - MIR SINE MIR -50 212 51 1213 212 35 23 chr6 141113065 141113444 -41301798 + LTR40b LTR ERVL 1 429 -33 180 0 0 0 chr6 141113506 141113526 -41301716 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 557 291 121 5 chr6 141114487 141114686 -41300556 - MIR SINE MIR -1 261 40 190 351 0 0 chr6 141115141 141115215 -41300027 + L2 LINE L2 3220 3293 -20 222 86 0 0 chr6 141115616 141115636 -41299606 + (TG)n Simple_repeat Simple_repeat 2 24 -12 2321 89 3 0 chr6 141115636 141115929 -41299313 - AluSg SINE Alu -16 294 1 222 86 0 0 chr6 141115929 141115943 -41299299 + (TG)n Simple_repeat Simple_repeat 23 36 0 1765 168 7 17 chr6 141115982 141116280 -41298962 - AluJo SINE Alu -16 296 2 1752 162 56 35 chr6 141116671 141117010 -41298232 - MER7A DNA MER2_type -2 344 1 397 229 42 59 chr6 141117204 141117322 -41297920 - L2 LINE L2 0 3272 3157 2091 128 68 70 chr6 141119761 141120190 -41295052 - MSTC LTR MaLR 0 428 1 2240 104 0 0 chr6 141121886 141122168 -41293074 + AluSg SINE Alu 1 283 -22 186 71 0 0 chr6 141122168 141122196 -41293046 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 711 269 47 14 chr6 141122209 141122421 -41292821 + MIR SINE MIR 1 219 -43 389 207 5 42 chr6 141122440 141122550 -41292692 - FLAM_A SINE Alu -1 132 43 195 227 45 0 chr6 141122675 141122719 -41292523 - L2 LINE L2 0 3313 3268 180 0 0 0 chr6 141123351 141123371 -41291871 + (A)n Simple_repeat Simple_repeat 1 20 0 876 214 0 12 chr6 141123848 141124016 -41291226 - FRAM SINE Alu 0 166 1 23 0 0 0 chr6 141124025 141124048 -41291194 + AT_rich Low_complexity Low_complexity 1 23 0 416 285 45 34 chr6 141124094 141124273 -41290969 - L2 LINE L2 -659 2655 2475 7442 41 0 3 chr6 141124349 141125387 -41289855 - L1PA6 LINE L1 0 6154 5118 242 277 241 0 chr6 141125818 141125930 -41289312 - MER5A DNA MER1_type -3 186 48 234 0 0 0 chr6 141126020 141126046 -41289196 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2284 104 0 3 chr6 141126046 141126340 -41288902 - AluSq SINE Alu -20 293 1 342 0 0 0 chr6 141127377 141127415 -41287827 + (TA)n Simple_repeat Simple_repeat 2 39 0 1724 79 0 67 chr6 141127415 141127669 -41287573 - AluSq SINE Alu -3 310 74 2270 104 3 0 chr6 141127714 141128013 -41287229 + AluSq SINE Alu 1 300 -13 459 279 109 31 chr6 141128137 141128734 -41286508 - L1ME3A LINE L1 -244 5926 5279 1706 247 81 33 chr6 141128940 141129917 -41285325 + L1ME LINE L1 84 1153 -4927 22 80 0 0 chr6 141130337 141130387 -41284855 + AT_rich Low_complexity Low_complexity 1 50 0 2001 146 3 7 chr6 141130635 141130937 -41284305 - AluSx SINE Alu -11 301 1 355 184 40 0 chr6 141131525 141131601 -41283641 + MER116 DNA Mariner 1 79 -1 201 237 0 0 chr6 141131601 141131639 -41283603 + (CA)n Simple_repeat Simple_repeat 1 38 0 306 382 89 0 chr6 141132585 141132708 -41282534 - L2 LINE L2 -6 3266 3133 191 322 69 0 chr6 141133228 141133315 -41281927 - L2 LINE L2 -3135 179 87 1924 192 87 12 chr6 141133636 141134063 -41281179 + MLT1C LTR MaLR 7 465 -2 186 174 0 0 chr6 141134587 141134633 -41280609 + (CATA)n Simple_repeat Simple_repeat 2 47 0 191 289 0 0 chr6 141137357 141137395 -41277847 - MIR SINE MIR -111 151 114 3298 146 25 15 chr6 141137977 141138525 -41276717 + MER41C LTR ERV1 1 554 0 3651 131 42 3 chr6 141138925 141139504 -41275738 - MER4B LTR ERV1 -7 603 3 960 222 133 38 chr6 141139551 141139866 -41275376 + MLT2B1 LTR ERVL 5 349 -171 1046 83 28 0 chr6 141139868 141140013 -41275229 + MER41A LTR ERV1 1 149 -405 1873 193 11 35 chr6 141140072 141140445 -41274797 + LTR10B LTR ERV1 184 547 0 3201 82 16 7 chr6 141140445 141140870 -41274372 + MER41A LTR ERV1 126 554 0 764 173 160 0 chr6 141140870 141141019 -41274223 + MLT2B1 LTR ERVL 348 520 0 529 282 149 0 chr6 141141019 141141193 -41274049 + L3 LINE CR1 1350 1549 -28 348 347 16 8 chr6 141141230 141141354 -41273888 - MIR3 SINE MIR -7 201 77 2218 138 112 5 chr6 141141816 141142029 -41273213 - MSTB LTR MaLR 0 426 237 212 0 36 0 chr6 141142029 141142057 -41273185 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2218 138 112 5 chr6 141142057 141142228 -41273014 - MSTB LTR MaLR -189 237 1 2152 108 14 0 chr6 141142367 141142653 -41272589 + AluSx SINE Alu 1 290 -22 739 275 39 14 chr6 141142829 141143036 -41272206 - MIR SINE MIR 0 262 51 376 288 103 37 chr6 141144154 141144421 -41270821 - MLT1J2 LTR MaLR -31 419 76 2327 74 0 3 chr6 141144880 141145211 -41270031 - AluY SINE Alu 0 331 2 1587 217 62 8 chr6 141145471 141145840 -41269402 + MSTD LTR MaLR 1 389 -7 3612 256 78 27 chr6 141145908 141146147 -41269095 - L2 LINE L2 -28 3285 3060 2028 131 0 0 chr6 141146147 141146429 -41268813 - AluSx SINE Alu -30 282 1 3612 256 78 27 chr6 141146429 141147576 -41267666 - L2 LINE L2 -253 3060 1821 212 325 170 16 chr6 141147599 141147787 -41267455 - L2 LINE L2 -1666 1648 1432 241 282 64 0 chr6 141147836 141147914 -41267328 - L2 LINE L2 -2359 955 873 207 114 0 0 chr6 141148383 141148418 -41266824 + (T)n Simple_repeat Simple_repeat 1 35 0 228 285 67 55 chr6 141149277 141149442 -41265800 - L1ME4a LINE L1 0 6121 5955 322 225 71 104 chr6 141149478 141149660 -41265582 - L1ME4a LINE L1 -259 5862 5687 212 278 100 33 chr6 141149668 141149758 -41265484 + MIR SINE MIR 157 252 -10 265 261 45 23 chr6 141149839 141149927 -41265315 - L1ME4a LINE L1 -528 5593 5504 1877 261 117 35 chr6 141149937 141151013 -41264229 - L1ME3A LINE L1 -5 6165 4987 2121 190 7 3 chr6 141151276 141151682 -41263560 - L1MB3 LINE L1 -124 6059 5653 240 286 0 0 chr6 141152080 141152164 -41263078 + (TA)n Simple_repeat Simple_repeat 2 85 0 308 253 22 44 chr6 141152165 141152256 -41262986 + L1MC4 LINE L1 6615 6703 -1339 242 248 76 29 chr6 141152274 141152379 -41262863 + L1MC4 LINE L1 6614 6723 -1319 544 291 92 40 chr6 141152462 141153008 -41262234 - L1MC4 LINE L1 -1951 5857 5284 757 292 85 92 chr6 141153035 141154283 -41260959 - L1MC4 LINE L1 -881 5265 4027 399 264 19 9 chr6 141154434 141154540 -41260702 + MIR SINE MIR 48 154 -108 227 209 0 0 chr6 141155724 141155767 -41259475 + L2 LINE L2 3271 3313 0 261 0 0 0 chr6 141156389 141156418 -41258824 + (TG)n Simple_repeat Simple_repeat 2 30 0 2139 115 0 0 chr6 141157330 141157643 -41257599 - AluSc SINE Alu 0 313 1 180 0 0 0 chr6 141157654 141157674 -41257568 + (TTG)n Simple_repeat Simple_repeat 2 21 0 23 54 0 0 chr6 141157881 141157918 -41257324 + AT_rich Low_complexity Low_complexity 1 37 0 207 321 133 57 chr6 141160309 141160624 -41254618 - L3b LINE CR1 -17 1566 1228 4415 86 9 5 chr6 141160713 141161342 -41253900 + L1PA10 LINE L1 5534 6165 -3 744 258 58 50 chr6 141161360 141161600 -41253642 - MIR SINE MIR 0 262 21 201 74 0 0 chr6 141161794 141161821 -41253421 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 27 81 0 0 chr6 141163479 141163541 -41251701 + AT_rich Low_complexity Low_complexity 1 62 0 185 289 96 24 chr6 141163692 141163775 -41251467 + MIR3 SINE MIR 15 103 -105 1478 69 5 30 chr6 141164260 141164462 -41250780 - MER107 DNA MER1_type 0 197 1 4500 102 25 6 chr6 141164976 141165642 -41249600 + L1PA16 LINE L1 5479 6157 -9 1927 129 28 3 chr6 141166660 141166946 -41248296 + AluSx SINE Alu 1 293 -19 406 151 121 33 chr6 141167806 141167839 -41247403 - L1P4 LINE L1 -652 5522 5493 657 48 24 79 chr6 141167839 141167965 -41247277 - L1MB3 LINE L1 -1 6182 6064 406 151 121 33 chr6 141167965 141168043 -41247199 - L1P4 LINE L1 -681 5493 5415 1479 159 0 4 chr6 141168048 141168293 -41246949 - L1MB4 LINE L1 -65 6115 5872 3057 157 17 27 chr6 141168431 141168688 -41246554 - L1MB4 LINE L1 -314 5866 5608 2117 111 0 17 chr6 141168688 141168985 -41246257 - AluSc SINE Alu -16 293 2 3057 157 17 27 chr6 141168985 141169312 -41245930 - L1MB4 LINE L1 -572 5608 5288 405 286 131 6 chr6 141170141 141170316 -41244926 + L2 LINE L2 3115 3311 -2 811 215 45 34 chr6 141171630 141171734 -41243508 - Charlie1b DNA MER1_type -2305 456 355 2264 95 3 0 chr6 141171734 141172030 -41243212 + AluSp SINE Alu 1 297 -16 811 215 45 34 chr6 141172030 141172321 -41242921 - Charlie1b DNA MER1_type -2406 355 8 452 285 66 0 chr6 141172519 141172656 -41242586 + MIR SINE MIR 107 252 -10 378 0 0 0 chr6 141173460 141173502 -41241740 + (TA)n Simple_repeat Simple_repeat 2 43 0 858 102 34 0 chr6 141173860 141174007 -41241235 + GA-rich Low_complexity Low_complexity 3 154 0 337 125 0 0 chr6 141174011 141174059 -41241183 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 305 111 0 0 chr6 141174387 141174432 -41240810 + MADE1 DNA Mariner 1 45 -35 549 276 126 7 chr6 141174602 141174895 -41240347 - L1ME4a LINE L1 -8 6113 5786 823 223 52 43 chr6 141174910 141175143 -41240099 + MIR SINE MIR 4 238 -24 268 261 54 9 chr6 141175179 141175290 -41239952 - L1ME4a LINE L1 -378 5743 5628 417 288 70 49 chr6 141175802 141176045 -41239197 - L1ME4a LINE L1 -1170 4976 4729 255 246 46 0 chr6 141176172 141176237 -41239005 + MLT1J LTR MaLR 134 201 -310 2255 104 3 0 chr6 141177128 141177425 -41237817 + AluSc SINE Alu 1 298 -11 1432 161 36 0 chr6 141177443 141177692 -41237550 - Tigger2 DNA MER2_type 0 2718 2461 2266 157 67 3 chr6 141177695 141178084 -41237158 + MSTB LTR MaLR 1 414 -12 3974 168 42 0 chr6 141178151 141178865 -41236377 - Tigger2 DNA MER2_type -1974 744 1 532 335 88 22 chr6 141179581 141180074 -41235168 - L2 LINE L2 -110 3203 2628 424 226 252 0 chr6 141181156 141181271 -41233971 - MER63 DNA MER1_type -66 770 1 291 54 0 0 chr6 141181757 141181794 -41233448 + (TA)n Simple_repeat Simple_repeat 2 38 0 2111 135 38 0 chr6 141181823 141182170 -41233072 + L1PB4 LINE L1 5789 6148 -8 198 0 0 0 chr6 141184197 141184219 -41231023 + (T)n Simple_repeat Simple_repeat 1 22 0 185 327 18 0 chr6 141184362 141184417 -41230825 - L2 LINE L2 -8 3264 3209 1259 231 21 49 chr6 141184452 141184838 -41230404 + L1 LINE L1 3923 4297 -1849 2294 108 0 0 chr6 141184944 141185240 -41230002 + AluSg SINE Alu 3 298 -12 483 204 48 152 chr6 141185597 141185690 -41229552 - MER3 DNA MER1_type -3 206 105 2219 114 0 3 chr6 141185690 141185987 -41229255 - AluSc SINE Alu -11 298 3 483 204 48 152 chr6 141185987 141186123 -41229119 - MER3 DNA MER1_type -104 105 1 376 268 41 27 chr6 141186334 141186472 -41228770 - L1MC/D LINE L1 -442 5679 5540 603 283 46 62 chr6 141186678 141186918 -41228324 - MIR SINE MIR -26 236 1 1767 201 99 23 chr6 141186958 141187059 -41228183 + MLT1C LTR MaLR 3 95 -372 15602 116 20 10 chr6 141187059 141189453 -41225789 + Tigger1 DNA MER2_type 1 2418 0 1767 201 99 23 chr6 141189453 141189783 -41225459 + MLT1C LTR MaLR 95 467 0 1813 176 3 10 chr6 141190391 141190687 -41224555 - AluJb SINE Alu -17 295 2 233 329 135 22 chr6 141190950 141191172 -41224070 - MIR SINE MIR -14 248 2 1201 171 8 17 chr6 141191320 141191560 -41223682 + MER33 DNA MER1_type 19 256 -68 1419 162 7 14 chr6 141191592 141191870 -41223372 - L1MA4 LINE L1 -6 6294 6019 4294 133 13 6 chr6 141191870 141192564 -41222678 + L1MA4 LINE L1 5272 5970 -330 432 167 12 0 chr6 141192568 141192652 -41222590 + MER33 DNA MER1_type 240 324 0 1028 261 71 10 chr6 141192885 141193196 -41222046 + MLT1H LTR MaLR 1 330 -219 1634 216 24 80 chr6 141193197 141193697 -41221545 - MLT1D LTR MaLR -1 504 33 282 143 0 0 chr6 141193697 141193746 -41221496 + (TG)n Simple_repeat Simple_repeat 2 50 0 358 236 255 0 chr6 141193780 141193886 -41221356 + MLT1H LTR MaLR 325 457 -92 24 32 0 0 chr6 141194072 141194103 -41221139 + AT_rich Low_complexity Low_complexity 1 31 0 354 45 0 0 chr6 141194864 141194908 -41220334 + (TG)n Simple_repeat Simple_repeat 2 45 0 196 298 298 11 chr6 141195858 141196049 -41219193 - MIR SINE MIR -11 251 6 213 279 47 12 chr6 141196531 141196617 -41218625 - MIR SINE MIR -73 189 101 21 36 0 0 chr6 141196817 141196845 -41218397 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 141197828 141197864 -41217378 + AT_rich Low_complexity Low_complexity 1 36 0 26 50 0 0 chr6 141198030 141198070 -41217172 + AT_rich Low_complexity Low_complexity 1 40 0 375 247 10 10 chr6 141199099 141199196 -41216046 - MER5B DNA MER1_type -81 97 1 396 291 9 9 chr6 141199197 141199307 -41215935 + L2 LINE L2 3149 3258 -14 488 274 120 6 chr6 141200519 141200694 -41214548 + MIR SINE MIR 6 200 -62 206 31 0 31 chr6 141202415 141202447 -41212795 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 30 77 0 0 chr6 141203189 141203254 -41211988 + AT_rich Low_complexity Low_complexity 1 65 0 2244 89 10 0 chr6 141203305 141203596 -41211646 - AluSc SINE Alu -15 294 1 22 56 0 0 chr6 141204667 141204703 -41210539 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr6 141204846 141204888 -41210354 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr6 141205158 141205187 -41210055 + AT_rich Low_complexity Low_complexity 1 29 0 822 165 0 0 chr6 141205187 141205308 -41209934 - FLAM_C SINE Alu -20 123 3 211 328 60 0 chr6 141205425 141205492 -41209750 - L2 LINE L2 -13 3259 3189 237 240 50 16 chr6 141205621 141205742 -41209500 + L1M4 LINE L1 3092 3216 -2930 2244 78 0 0 chr6 141207492 141207807 -41207435 - AluY SINE Alu 0 326 12 629 277 52 26 chr6 141207865 141208096 -41207146 - L1MEd LINE L1 -5385 734 498 274 318 87 0 chr6 141208274 141208400 -41206842 - L1MEd LINE L1 -5860 259 123 1127 247 121 34 chr6 141208565 141209561 -41205681 - L1ME LINE L1 -367 5795 4625 1734 149 9 25 chr6 141209566 141209914 -41205328 - MER4A LTR ERV1 0 664 263 701 101 0 10 chr6 141209914 141210013 -41205229 - MER4A LTR ERV1 -566 98 1 766 250 211 12 chr6 141210024 141210608 -41204634 - L1ME LINE L1 -1545 4601 3902 313 241 47 82 chr6 141210628 141210798 -41204444 - HAL1 LINE L1 -2033 474 311 1616 199 17 0 chr6 141210802 141211089 -41204153 - AluJo SINE Alu -18 294 3 2042 134 0 7 chr6 141211139 141211438 -41203804 - AluSc SINE Alu -12 297 1 717 303 89 34 chr6 141211614 141211645 -41203597 - L2 LINE L2 0 3313 3285 951 128 5 83 chr6 141211645 141211849 -41203393 + MER53 DNA DNA 1 188 -1 717 303 89 34 chr6 141211849 141212347 -41202895 - L2 LINE L2 -28 3285 2759 316 64 0 0 chr6 141212388 141212435 -41202807 + L1PA13 LINE L1 6113 6159 -4 2124 104 14 0 chr6 141212626 141212913 -41202329 - AluSx SINE Alu -19 293 3 349 245 77 84 chr6 141212946 141213101 -41202141 - L2 LINE L2 -611 2703 2550 39 38 0 0 chr6 141213790 141213843 -41201399 + AT_rich Low_complexity Low_complexity 1 53 0 405 159 0 84 chr6 141214027 141214134 -41201108 - L1PA11 LINE L1 -1 6173 6076 504 324 74 8 chr6 141214717 141214961 -41200281 - MIR SINE MIR 0 262 3 2229 54 47 30 chr6 141215995 141216291 -41198951 + AluY SINE Alu 1 301 -10 195 250 150 79 chr6 141216329 141216469 -41198773 + L2 LINE L2 3164 3313 0 355 120 0 0 chr6 141216525 141216575 -41198667 - 5S rRNA rRNA -70 51 2 210 312 75 43 chr6 141217278 141217371 -41197871 + L2 LINE L2 3156 3251 -21 1594 115 0 9 chr6 141218463 141218681 -41196561 - AluY SINE Alu -95 216 1 2157 104 0 0 chr6 141220334 141220612 -41194630 - AluSx SINE Alu -21 291 14 2267 99 0 0 chr6 141220828 141221121 -41194121 + AluSg SINE Alu 1 293 -17 280 347 48 12 chr6 141222021 141222188 -41193054 - MIR3 SINE MIR -4 204 32 181 255 0 0 chr6 141223034 141223081 -41192161 + MIR SINE MIR 160 206 -56 1515 192 37 14 chr6 141223218 141223515 -41191727 + AluJo SINE Alu 3 306 -6 500 268 186 36 chr6 141223546 141223740 -41191502 - MIR SINE MIR -35 227 5 200 269 19 0 chr6 141224061 141224113 -41191129 + L3b LINE CR1 1528 1580 -3 714 124 0 8 chr6 141224184 141224305 -41190937 + L1MB8 LINE L1 6049 6168 -10 248 247 70 23 chr6 141224735 141224822 -41190420 - MIR SINE MIR -59 149 58 997 190 56 121 chr6 141226120 141226533 -41188709 + MLT1B LTR MaLR 1 371 -3 814 288 87 82 chr6 141226944 141228355 -41186887 + L1MEc LINE L1 34 1451 -4945 396 299 130 22 chr6 141228766 141228997 -41186245 - MIR SINE MIR -3 259 4 27 0 0 0 chr6 141229309 141229336 -41185906 + AT_rich Low_complexity Low_complexity 1 27 0 205 197 0 16 chr6 141229407 141229463 -41185779 + T-rich Low_complexity Low_complexity 2 57 0 7595 30 0 0 chr6 141229463 141231032 -41184210 - L1PA3 LINE L1 -3 6152 4584 412 303 33 7 chr6 141231101 141231253 -41183989 + MLT1I LTR MaLR 1 156 -253 393 145 14 0 chr6 141231388 141231457 -41183785 + MLT1I LTR MaLR 334 403 -6 340 362 65 46 chr6 141231836 141232143 -41183099 - HAL1 LINE L1 -898 1609 1297 1472 180 0 70 chr6 141232300 141232616 -41182626 + AluJo SINE Alu 11 304 -8 282 192 56 48 chr6 141232685 141232784 -41182458 + MLT1H LTR MaLR 39 174 -375 280 258 32 21 chr6 141232941 141233034 -41182208 + MLT1H LTR MaLR 456 549 0 213 94 0 0 chr6 141233770 141233802 -41181440 + (TA)n Simple_repeat Simple_repeat 2 33 0 327 167 0 0 chr6 141234072 141234138 -41181104 + (TA)n Simple_repeat Simple_repeat 1 66 0 1935 147 3 0 chr6 141234138 141234306 -41180936 - AluSx SINE Alu -25 287 116 207 0 0 0 chr6 141234306 141234329 -41180913 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1935 147 3 0 chr6 141234329 141234446 -41180796 - AluSx SINE Alu -196 116 1 194 352 29 19 chr6 141234916 141235021 -41180221 - L2 LINE L2 -222 3050 2945 359 219 109 42 chr6 141237202 141237321 -41177921 + MER94 DNA DNA 2 128 -6 201 74 0 0 chr6 141238194 141238221 -41177021 + (TCC)n Simple_repeat Simple_repeat 3 29 0 21 36 0 0 chr6 141238278 141238306 -41176936 + AT_rich Low_complexity Low_complexity 1 28 0 420 158 148 30 chr6 141238398 141238499 -41176743 - L2 LINE L2 -2 3311 3199 226 279 125 15 chr6 141238858 141238994 -41176248 - L1ME LINE L1 -362 5759 5609 27 73 0 0 chr6 141239317 141239372 -41175870 + AT_rich Low_complexity Low_complexity 1 55 0 2349 107 37 8 chr6 141239951 141240305 -41174937 + THE1B LTR MaLR 1 364 0 201 74 0 0 chr6 141240767 141240794 -41174448 + (A)n Simple_repeat Simple_repeat 1 27 0 2261 113 0 3 chr6 141241405 141241716 -41173526 - AluSg SINE Alu 0 310 1 2001 158 3 0 chr6 141242066 141242369 -41172873 - AluSx SINE Alu -8 304 1 332 302 36 22 chr6 141244121 141244260 -41170982 + MER5A DNA MER1_type 1 141 -48 324 312 80 8 chr6 141244152 141244277 -41170965 - MER5B DNA MER1_type -18 160 27 * 189 0 0 0 chr6 141244303 141244324 -41170918 + (A)n Simple_repeat Simple_repeat 1 21 0 2049 146 0 0 chr6 141244746 141245048 -41170194 - AluSx SINE Alu -10 302 1 5536 154 20 32 chr6 141245834 141246918 -41168324 - MER11C LTR ERVK 0 1071 1 1992 157 0 0 chr6 141246935 141247247 -41167995 - AluJb SINE Alu 0 312 1 744 186 0 0 chr6 141247478 141247591 -41167651 - FLAM_C SINE Alu -24 119 7 574 246 164 9 chr6 141247599 141247819 -41167423 - L1ME3A LINE L1 -77 6093 5840 250 253 131 0 chr6 141247831 141247930 -41167312 + Charlie8 DNA MER1_type 455 566 -1851 1762 250 70 55 chr6 141247990 141248665 -41166577 - L1ME3A LINE L1 0 6170 5486 1442 262 70 41 chr6 141248739 141249569 -41165673 - L1M1 LINE L1 -715 5449 4647 192 268 42 28 chr6 141249637 141249708 -41165534 + L2 LINE L2 2730 2801 -513 233 316 10 0 chr6 141249712 141249810 -41165432 - L1ME3A LINE L1 -745 5425 5327 2078 102 4 0 chr6 141249854 141250128 -41165114 - AluSq SINE Alu -6 307 33 204 132 26 0 chr6 141251341 141251379 -41163863 + (TG)n Simple_repeat Simple_repeat 1 39 0 546 113 0 0 chr6 141251555 141251635 -41163607 + MADE1 DNA Mariner 1 80 0 196 204 74 19 chr6 141251900 141251954 -41163288 + L2 LINE L2 3216 3272 0 233 314 8 81 chr6 141251988 141252112 -41163130 + L2 LINE L2 3180 3294 -19 200 114 29 0 chr6 141254884 141254919 -41160323 + (CAT)n Simple_repeat Simple_repeat 3 38 0 623 321 159 27 chr6 141255103 141255663 -41159579 - L2 LINE L2 -610 2704 2071 202 315 55 0 chr6 141256447 141256520 -41158722 - MIR SINE MIR -12 250 174 446 193 140 82 chr6 141257477 141257582 -41157660 + L2 LINE L2 2199 2296 -1018 1702 157 49 35 chr6 141257582 141257952 -41157290 - THE1C LTR MaLR 0 375 1 446 193 140 82 chr6 141257952 141258053 -41157189 + L2 LINE L2 2296 2417 -897 690 289 96 24 chr6 141258092 141258424 -41156818 - MLT1L LTR MaLR -2 613 258 835 315 41 35 chr6 141258549 141259032 -41156210 + L1MEc LINE L1 35 520 -5876 2344 205 94 40 chr6 141260078 141260654 -41154588 + Zaphod DNA AcHobo 2 608 -3423 1020 232 35 0 chr6 141260661 141260920 -41154322 + Zaphod DNA AcHobo 3733 4000 -31 1772 197 16 16 chr6 141262596 141262961 -41152281 - MLT1A1 LTR MaLR 0 365 1 370 244 74 7 chr6 141264274 141264409 -41150833 - MER112 DNA MER1_type -48 212 69 201 380 97 0 chr6 141264804 141264917 -41150325 - L2 LINE L2 0 3272 3149 1079 205 48 0 chr6 141264918 141265128 -41150114 + MER58A DNA MER1_type 1 220 -4 237 306 100 68 chr6 141265557 141265867 -41149375 + Charlie8 DNA MER1_type 107 426 -1991 2262 105 0 0 chr6 141265877 141266172 -41149070 + AluSg1 SINE Alu 1 295 -14 744 150 170 0 chr6 141266235 141266382 -41148860 + MER2 DNA MER2_type 24 195 -150 22 35 0 0 chr6 141266383 141266412 -41148830 + AT_rich Low_complexity Low_complexity 1 29 0 282 277 15 0 chr6 141266432 141266497 -41148745 + MER2 DNA MER2_type 280 345 0 197 306 111 56 chr6 141266693 141266837 -41148405 - MIR3 SINE MIR -27 181 30 204 285 60 60 chr6 141268580 141268731 -41146511 + MIR SINE MIR 53 203 -59 376 283 28 9 chr6 141269156 141269262 -41145980 + L3b LINE CR1 1289 1396 -187 261 327 115 19 chr6 141269510 141269666 -41145576 - MIR3 SINE MIR -15 193 23 324 111 0 0 chr6 141272302 141272356 -41142886 + (CCTA)n Simple_repeat Simple_repeat 2 55 0 1056 285 35 63 chr6 141272519 141272782 -41142460 + L2 LINE L2 2866 3112 -201 2171 109 13 0 chr6 141272782 141273084 -41142158 - AluSp SINE Alu -7 306 1 1056 285 35 63 chr6 141273084 141273280 -41141962 + L2 LINE L2 3112 3312 -1 5040 173 16 16 chr6 141273442 141274401 -41140841 + L1MA10 LINE L1 5363 6321 -13 1795 157 7 14 chr6 141275401 141275723 -41139519 + AluJb SINE Alu 1 320 0 410 267 6 105 chr6 141275743 141275855 -41139387 + MIR SINE MIR 108 199 -63 389 76 15 0 chr6 141275855 141275921 -41139321 + (TATG)n Simple_repeat Simple_repeat 2 68 0 410 267 6 105 chr6 141275921 141275980 -41139262 + MIR SINE MIR 199 262 0 529 283 33 36 chr6 141276109 141276352 -41138890 + MLT1H LTR MaLR 38 287 -122 384 239 29 94 chr6 141276386 141276524 -41138718 + MLT1H LTR MaLR 421 549 0 26 30 0 0 chr6 141277110 141277143 -41138099 + AT_rich Low_complexity Low_complexity 1 33 0 540 240 45 19 chr6 141277642 141277796 -41137446 - MER5B DNA MER1_type -1 177 20 543 335 35 0 chr6 141278159 141278362 -41136880 - MER63A DNA MER1_type 0 210 1 358 282 29 0 chr6 141279836 141279939 -41135303 + MER5A DNA MER1_type 7 112 -77 260 226 0 12 chr6 141280528 141280612 -41134630 + GA-rich Low_complexity Low_complexity 2 84 0 1760 208 19 8 chr6 141282198 141282558 -41132684 + MLT1A1 LTR MaLR 1 364 -1 1837 196 8 14 chr6 141283109 141283476 -41131766 + MLT1A1 LTR MaLR 1 365 0 288 0 0 0 chr6 141284639 141284671 -41130571 + (CA)n Simple_repeat Simple_repeat 1 32 0 366 300 60 33 chr6 141286027 141286177 -41129065 + MIR SINE MIR 3 156 -106 288 135 36 20 chr6 141286182 141286254 -41128988 + L1M1 LINE L1 5676 5751 -418 1906 126 46 3 chr6 141286311 141286596 -41128646 + AluSc SINE Alu 1 297 -12 32 26 0 0 chr6 141287277 141287316 -41127926 + AT_rich Low_complexity Low_complexity 1 39 0 539 272 104 36 chr6 141287508 141287742 -41127500 - L1MEc LINE L1 -4742 1654 1382 342 0 0 0 chr6 141287742 141287780 -41127462 + (TG)n Simple_repeat Simple_repeat 2 39 0 539 272 104 36 chr6 141287780 141287931 -41127311 - L1MEc LINE L1 -5014 1382 1243 267 297 89 72 chr6 141288379 141288615 -41126627 - L1MEc LINE L1 -5876 329 90 1662 63 10 0 chr6 141288746 141288952 -41126290 + AluY SINE Alu 99 306 -5 24 0 0 0 chr6 141289189 141289213 -41126029 + AT_rich Low_complexity Low_complexity 1 24 0 305 47 23 0 chr6 141289684 141289727 -41125515 + (TG)n Simple_repeat Simple_repeat 2 45 0 300 164 0 96 chr6 141290853 141290926 -41124316 - L1MC4 LINE L1 -1363 6679 6614 583 157 0 22 chr6 141292352 141292486 -41122756 + CT-rich Low_complexity Low_complexity 2 132 0 24 67 0 0 chr6 141292652 141292697 -41122545 + AT_rich Low_complexity Low_complexity 1 45 0 248 189 0 0 chr6 141293466 141293503 -41121739 + L1MDa LINE L1 15 51 -6489 3705 268 64 12 chr6 141293509 141294963 -41120279 + L1M4 LINE L1 2490 4018 -2128 816 255 11 40 chr6 141294968 141295317 -41119925 + L1M4 LINE L1 4942 5280 -866 3187 143 21 5 chr6 141295320 141296156 -41119086 - L1M1 LINE L1 -743 5403 4493 4408 158 15 5 chr6 141296170 141296963 -41118279 + L1MA4 LINE L1 5494 6294 -6 590 143 48 20 chr6 141296995 141297142 -41118100 - Charlie5 DNA MER1_type -56 2556 2406 859 314 45 62 chr6 141297173 141297734 -41117508 + HERVL LTR ERVL 3930 4480 -1174 864 188 64 60 chr6 141297743 141297961 -41117281 + MER20 DNA MER1_type 1 219 0 1558 143 84 4 chr6 141297967 141298373 -41116869 - L1M2 LINE L1 -699 5592 5161 2176 104 6 6 chr6 141298665 141298992 -41116250 - L1P LINE L1 -1582 4564 4238 5644 70 0 12 chr6 141298992 141299729 -41115513 + L1PA8 LINE L1 5427 6171 -1 298 311 62 48 chr6 141299891 141300233 -41115009 + HERVL LTR ERVL 5016 5334 -320 952 300 97 22 chr6 141300377 141300780 -41114462 + LTR16A LTR ERVL 18 450 0 2074 130 3 7 chr6 141301287 141301595 -41113647 - AluSg SINE Alu -1 309 3 375 260 91 78 chr6 141301857 141302099 -41113143 - L1M4c LINE L1 -2580 3846 3602 327 274 113 60 chr6 141302188 141302575 -41112667 - L1M4c LINE L1 -4768 1660 1205 378 284 64 77 chr6 141302664 141302977 -41112265 - L1M4 LINE L1 -1912 4234 3926 967 299 45 24 chr6 141303015 141303396 -41111846 + MLT1I LTR MaLR 6 394 -15 198 333 14 14 chr6 141303790 141303859 -41111383 - L2 LINE L2 -219 3053 2985 237 327 0 9 chr6 141306623 141306730 -41108512 - L1MC/D LINE L1 -2016 5792 5687 1556 233 116 24 chr6 141306823 141307290 -41107952 - HERVL40 LTR ERVL -2485 3045 2536 662 268 33 16 chr6 141307358 141307541 -41107701 - HERVL40 LTR ERVL -4017 1513 1328 1210 245 20 27 chr6 141307599 141307897 -41107345 - HERVL40 LTR ERVL -4317 1213 918 1964 272 20 8 chr6 141308185 141308674 -41106568 - LTR40a LTR ERVL 0 519 25 503 287 119 28 chr6 141309786 141310187 -41105055 + L1M4 LINE L1 675 1038 -5272 2036 142 121 18 chr6 141310187 141310575 -41104667 - MSTA LTR MaLR 0 428 1 9651 132 11 35 chr6 141310576 141312192 -41103050 - MSTA-int LTR MaLR -1 1579 3 2000 143 115 43 chr6 141312194 141312416 -41102826 - MSTA LTR MaLR 0 428 224 2177 130 0 0 chr6 141312416 141312715 -41102527 - AluSc SINE Alu -10 299 1 2000 143 115 43 chr6 141312715 141312891 -41102351 - MSTA LTR MaLR -204 224 1 503 287 119 28 chr6 141312891 141313374 -41101868 + L1M4 LINE L1 1038 1686 -4624 965 209 92 24 chr6 141313861 141314108 -41101134 - MLT1D LTR MaLR -13 492 243 209 264 50 0 chr6 141314179 141314338 -41100904 + (TA)n Simple_repeat Simple_repeat 2 168 0 3715 98 4 4 chr6 141314826 141315337 -41099905 + MER9 LTR ERVK 1 511 0 504 243 7 29 chr6 141315384 141315520 -41099722 - MLT1D LTR MaLR -372 133 1 350 291 111 29 chr6 141315533 141315911 -41099331 + L1M4 LINE L1 3664 4072 -2057 15098 157 86 16 chr6 141315913 141317559 -41097683 + L1PB1 LINE L1 3 1533 -5334 2115 130 13 0 chr6 141317559 141317866 -41097376 + AluSq SINE Alu 1 311 -2 15098 157 86 16 chr6 141317866 141320885 -41094357 + L1PB1 LINE L1 1533 5205 -1662 342 0 0 0 chr6 141320885 141320923 -41094319 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 15098 157 86 16 chr6 141320923 141322324 -41092918 + L1PB1 LINE L1 5205 6507 -360 348 111 0 0 chr6 141322333 141322387 -41092855 + (TA)n Simple_repeat Simple_repeat 2 55 0 1098 69 31 19 chr6 141322390 141322550 -41092692 + L1PB1 LINE L1 6706 6867 0 851 307 111 9 chr6 141322580 141323627 -41091615 + L1M4 LINE L1 4083 5236 -893 407 279 76 25 chr6 141323715 141324012 -41091230 + L1M4 LINE L1 5324 5643 -524 2318 93 0 31 chr6 141324590 141324912 -41090330 + AluSx SINE Alu 1 312 0 418 283 101 36 chr6 141324982 141325367 -41089875 - L1ME4a LINE L1 -96 6025 5616 2120 134 6 13 chr6 141325636 141325950 -41089292 + AluSx SINE Alu 1 312 0 306 233 82 14 chr6 141325990 141326136 -41089106 + HAL1 LINE L1 942 1097 -1410 189 340 59 78 chr6 141327874 141328027 -41087215 - L2 LINE L2 -48 3224 3075 24 0 0 0 chr6 141328769 141328793 -41086449 + AT_rich Low_complexity Low_complexity 1 24 0 310 335 32 52 chr6 141328842 141328997 -41086245 + MIR3 SINE MIR 33 184 -24 2020 112 0 21 chr6 141329972 141330297 -41084945 + AluSc SINE Alu 1 319 0 3375 145 110 19 chr6 141331038 141331748 -41083494 - LTR1B LTR ERV1 0 785 1 318 330 94 40 chr6 141331825 141332101 -41083141 + L2 LINE L2 1495 1785 -1529 587 296 17 62 chr6 141332198 141332317 -41082925 + L2 LINE L2 2034 2157 -1157 2499 47 23 0 chr6 141332317 141332616 -41082626 - AluY SINE Alu -5 306 1 587 296 17 62 chr6 141332616 141332851 -41082391 + L2 LINE L2 2157 2372 -942 676 173 55 8 chr6 141332854 141332981 -41082261 - FLAM_C SINE Alu -10 133 1 360 286 48 0 chr6 141333278 141333383 -41081859 + L2 LINE L2 3203 3312 -1 303 49 0 0 chr6 141334928 141334969 -41080273 + (TG)n Simple_repeat Simple_repeat 2 42 0 24 53 0 0 chr6 141335107 141335145 -41080097 + AT_rich Low_complexity Low_complexity 1 38 0 1843 126 139 13 chr6 141336331 141336711 -41078531 - MSTA LTR MaLR 0 428 1 262 376 12 0 chr6 141337029 141337114 -41078128 - L2 LINE L2 -23 3249 3164 763 242 35 28 chr6 141337124 141337413 -41077829 - L1MC5 LINE L1 -11 7950 7660 881 165 130 0 chr6 141337424 141337492 -41077750 + L1MA9 LINE L1 6084 6142 -170 363 23 0 0 chr6 141337492 141337536 -41077706 + (CA)n Simple_repeat Simple_repeat 1 44 0 881 165 130 0 chr6 141337536 141337667 -41077575 + L1MA9 LINE L1 6142 6309 -3 23 33 0 0 chr6 141337667 141337697 -41077545 + AT_rich Low_complexity Low_complexity 1 30 0 648 229 74 50 chr6 141337802 141338060 -41077182 - L1MC5 LINE L1 -428 7533 7270 320 200 11 0 chr6 141338060 141338155 -41077087 + (TA)n Simple_repeat Simple_repeat 1 96 0 1816 149 33 0 chr6 141339801 141340077 -41075165 + AluSq SINE Alu 1 285 -28 186 43 0 0 chr6 141340081 141340104 -41075138 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 14082 196 22 8 chr6 141340489 141347718 -41067524 - L1PA16 LINE L1 -3 6866 3 261 280 172 6 chr6 141347724 141347881 -41067361 - L1ME LINE L1 -321 5849 5667 25 0 0 0 chr6 141348031 141348056 -41067186 + AT_rich Low_complexity Low_complexity 1 25 0 306 290 125 48 chr6 141348412 141349140 -41066102 - L1ME LINE L1 -2379 3767 2984 183 80 0 0 chr6 141349434 141349459 -41065783 + (T)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr6 141350074 141350097 -41065145 + (A)n Simple_repeat Simple_repeat 1 23 0 1825 183 19 17 chr6 141350097 141350457 -41064785 + L1MA7 LINE L1 5894 6254 -37 490 226 0 0 chr6 141350464 141350557 -41064685 - MER7A DNA MER2_type -255 91 1 268 233 69 52 chr6 141350752 141350868 -41064374 - L1MC5 LINE L1 -37 7924 7807 2083 116 33 0 chr6 141351623 141351925 -41063317 + AluSx SINE Alu 1 312 0 241 274 76 19 chr6 141351932 141352071 -41063171 + MIR SINE MIR 31 262 0 277 265 20 41 chr6 141352118 141352216 -41063026 + MIR SINE MIR 65 160 -102 192 77 0 0 chr6 141352825 141352851 -41062391 + (T)n Simple_repeat Simple_repeat 1 26 0 1070 243 155 27 chr6 141352918 141353403 -41061839 + Charlie2 DNA MER1_type 1881 2427 -435 425 302 31 19 chr6 141353405 141353564 -41061678 - L2 LINE L2 -1 3312 3152 550 212 91 10 chr6 141353580 141353778 -41061464 + Charlie2 DNA MER1_type 2434 2647 -215 261 143 10 71 chr6 141353781 141353879 -41061363 + (TTATA)n Simple_repeat Simple_repeat 5 96 0 22 70 0 0 chr6 141354665 141354708 -41060534 + AT_rich Low_complexity Low_complexity 1 43 0 2046 127 32 0 chr6 141355147 141355494 -41059748 + L1MA2 LINE L1 5947 6304 0 495 259 33 71 chr6 141356264 141356445 -41058797 + MLT1H1 LTR MaLR 49 230 -325 445 286 53 0 chr6 141356498 141356631 -41058611 + MLT1H1 LTR MaLR 416 555 0 460 322 111 70 chr6 141356634 141356904 -41058338 + L2 LINE L2 2992 3272 0 318 26 0 0 chr6 141357504 141357543 -41057699 + (CA)n Simple_repeat Simple_repeat 2 40 0 182 245 82 0 chr6 141357874 141357923 -41057319 - L3b LINE CR1 -131 1452 1400 2140 115 3 0 chr6 141358052 141358340 -41056902 - AluSx SINE Alu -11 301 13 291 310 35 9 chr6 141359382 141359498 -41055744 - MIR SINE MIR -34 228 110 946 273 93 53 chr6 141359649 141359948 -41055294 - L2 LINE L2 0 3313 3027 1899 159 27 6 chr6 141359948 141360313 -41054929 - L1MA6 LINE L1 0 6300 5928 946 273 93 53 chr6 141360313 141360675 -41054567 - L2 LINE L2 -286 3027 2632 2594 102 13 11 chr6 141360724 141361097 -41054145 + THE1C LTR MaLR 2 375 0 10447 106 14 32 chr6 141361097 141362705 -41052537 + THE1C-int LTR MaLR 1 1580 0 2416 112 5 26 chr6 141362705 141363088 -41052154 + THE1C LTR MaLR 1 375 0 355 276 26 13 chr6 141363479 141363631 -41051611 - L1MCc LINE L1 -4604 2518 2365 227 259 12 12 chr6 141363734 141363815 -41051427 - L1MCc LINE L1 -4820 2121 2041 383 311 62 10 chr6 141363884 141364265 -41050977 - L1MCc LINE L1 -4890 1533 1297 353 233 113 30 chr6 141368343 141368476 -41046766 + MER112 DNA MER1_type 26 169 -91 1056 226 117 8 chr6 141369682 141369921 -41045321 - AluJo SINE Alu -15 297 33 264 253 51 13 chr6 141370276 141370355 -41044887 + L2 LINE L2 3182 3263 -50 441 248 19 25 chr6 141371401 141371562 -41043680 + (TATATG)n Simple_repeat Simple_repeat 2 161 0 206 233 67 17 chr6 141372888 141372948 -41042294 + MIR3 SINE MIR 135 197 -11 331 283 125 20 chr6 141374433 141374585 -41040657 - MIR SINE MIR -1 261 94 662 307 104 65 chr6 141374727 141375450 -41039792 + L1ME3A LINE L1 102 852 -5353 414 274 64 39 chr6 141375654 141375959 -41039283 + L1ME3A LINE L1 1085 1432 -4862 241 138 138 0 chr6 141376007 141376065 -41039177 + L1MB7 LINE L1 6119 6184 0 225 335 55 33 chr6 141376141 141376416 -41038826 + L1ME3A LINE L1 1538 1818 -4578 657 299 201 10 chr6 141376431 141377017 -41038225 + L1ME3A LINE L1 2118 2765 -3450 400 264 97 61 chr6 141377084 141377395 -41037847 + L1ME3A LINE L1 5714 6035 -204 740 272 124 39 chr6 141377429 141377863 -41037379 - MLT1G1 LTR MaLR -7 588 118 2298 99 10 0 chr6 141378498 141378802 -41036440 - AluSc SINE Alu -2 307 1 350 339 0 0 chr6 141379030 141379145 -41036097 - L2 LINE L2 -10 3303 3189 329 43 21 0 chr6 141380242 141380289 -41034953 + (TG)n Simple_repeat Simple_repeat 1 48 0 2346 97 0 3 chr6 141380702 141381010 -41034232 - AluSc SINE Alu -2 307 1 192 40 0 0 chr6 141381014 141381039 -41034203 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 566 275 49 0 chr6 141381056 141381198 -41034044 - L2 LINE L2 0 3313 3165 1626 239 35 41 chr6 141385487 141385980 -41029262 - LTR40a LTR ERVL -29 490 1 1966 185 48 30 chr6 141387475 141387934 -41027308 - MLT1C LTR MaLR 0 467 1 2231 161 84 119 chr6 141388205 141388862 -41026380 + LTR27 LTR ERV1 3 636 0 551 164 69 0 chr6 141389868 141389984 -41025258 + MLT1B LTR MaLR 1 124 -266 2241 168 55 38 chr6 141390269 141390746 -41024496 + MLT1D LTR MaLR 21 505 0 494 205 63 31 chr6 141391453 141391580 -41023662 - L2 LINE L2 -1231 2083 1953 631 283 58 21 chr6 141391997 141392237 -41023005 - MIR SINE MIR -8 254 6 203 306 113 44 chr6 141392268 141392516 -41022726 + L2 LINE L2 3045 3309 -4 733 269 92 4 chr6 141394105 141394343 -41020899 + MIR SINE MIR 4 262 0 2066 124 28 59 chr6 141395723 141396110 -41019132 + THE1C LTR MaLR 1 375 0 213 317 61 24 chr6 141396792 141396874 -41018368 - MIR SINE MIR -96 112 28 1925 102 0 0 chr6 141397542 141397788 -41017454 - AluSx SINE Alu -18 294 49 196 322 110 0 chr6 141398325 141398443 -41016799 + MIR SINE MIR 122 252 -10 23 68 0 0 chr6 141398530 141398574 -41016668 + AT_rich Low_complexity Low_complexity 1 44 0 227 246 16 0 chr6 141398634 141398695 -41016547 + L2 LINE L2 3211 3272 0 212 308 99 22 chr6 141399028 141399119 -41016123 - MIR SINE MIR -98 164 67 474 108 0 0 chr6 141399172 141399246 -41015996 + (TGGA)n Simple_repeat Simple_repeat 4 77 0 1688 225 58 44 chr6 141400228 141400712 -41014530 - MLT1E2 LTR MaLR -8 618 137 2382 57 0 14 chr6 141401066 141401362 -41013880 - AluY SINE Alu -19 292 1 180 358 15 0 chr6 141401463 141401530 -41013712 + L2 LINE L2 3200 3267 -5 5440 146 38 9 chr6 141401685 141402976 -41012266 - L1MA7 LINE L1 -1 6290 4960 2046 125 7 14 chr6 141403726 141404022 -41011220 + AluSx SINE Alu 1 294 -18 2064 147 0 25 chr6 141405051 141405370 -41009872 + AluSx SINE Alu 1 311 -1 183 280 20 0 chr6 141406178 141406228 -41009014 + L2 LINE L2 2986 3036 -236 236 320 48 48 chr6 141406372 141406497 -41008745 + L2 LINE L2 3180 3304 -9 335 148 37 25 chr6 141408104 141408185 -41007057 + L1MB8 LINE L1 6096 6177 -1 1592 169 0 8 chr6 141409729 141409984 -41005258 - AluJb SINE Alu -14 298 46 263 259 96 52 chr6 141412188 141412323 -41002919 + MIR3 SINE MIR 1 141 -67 492 319 12 6 chr6 141412581 141412744 -41002498 + MIR SINE MIR 89 252 -10 292 260 77 19 chr6 141413251 141413355 -41001887 + MIR SINE MIR 97 206 -56 2403 108 31 0 chr6 141413394 141413745 -41001497 - THE1B LTR MaLR 0 364 3 1738 154 18 11 chr6 141414363 141414643 -41000599 - AluSx SINE Alu -30 282 1 1160 81 6 6 chr6 141414737 141414910 -41000332 - L1MA5 LINE L1 -2 6298 6126 22 0 0 0 chr6 141415342 141415364 -40999878 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 141416418 141416439 -40998803 + AT_rich Low_complexity Low_complexity 1 21 0 2190 105 0 0 chr6 141417066 141417378 -40997864 + AluSq SINE Alu 1 312 0 1332 79 0 0 chr6 141417398 141417562 -40997680 - AluY SINE Alu -16 295 132 239 237 153 68 chr6 141417582 141417700 -40997542 - MER5A DNA MER1_type -22 156 29 189 359 0 13 chr6 141417650 141417728 -40997514 + MER5A DNA MER1_type 113 189 0 * 238 336 62 24 chr6 141417823 141418034 -40997208 - L2 LINE L2 -810 2504 2286 380 389 0 0 chr6 141418507 141418633 -40996609 - L2 LINE L2 0 3272 3147 4844 241 88 22 chr6 141419088 141421078 -40994164 + L1MEc LINE L1 288 2409 -3987 2429 227 68 55 chr6 141421774 141422062 -40993180 - L1MD2 LINE L1 -14 6345 6062 2358 162 82 44 chr6 141422062 141422121 -40993121 + LTR42 LTR ERVL 1 56 -439 1698 170 3 33 chr6 141422121 141422427 -40992815 + AluJo SINE Alu 1 297 -15 2358 162 82 44 chr6 141422427 141422842 -40992400 + LTR42 LTR ERVL 56 493 -2 2429 227 68 55 chr6 141422842 141423444 -40991798 - L1MD2 LINE L1 -297 6062 5443 23 97 0 0 chr6 141425495 141425567 -40989675 + AT_rich Low_complexity Low_complexity 1 72 0 22 0 0 0 chr6 141426790 141426812 -40988430 + AT_rich Low_complexity Low_complexity 1 22 0 240 269 157 19 chr6 141427743 141427851 -40987391 - MIR SINE MIR -16 246 124 1154 168 0 35 chr6 141428759 141428962 -40986280 + AluJo SINE Alu 1 196 -116 341 219 67 0 chr6 141429213 141429318 -40985924 - MER103 DNA DNA -7 159 48 212 221 78 52 chr6 141429687 141429764 -40985478 + L2 LINE L2 3194 3272 0 374 281 18 1 chr6 141429941 141430065 -40985177 + MLT1J1 LTR MaLR 45 168 -278 * 457 267 163 5 chr6 141430062 141430264 -40984978 + MLT1J2 LTR MaLR 205 438 -12 22 0 0 0 chr6 141430426 141430448 -40984794 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 141430514 141430536 -40984706 + AT_rich Low_complexity Low_complexity 1 22 0 222 62 0 0 chr6 141430564 141430596 -40984646 + (T)n Simple_repeat Simple_repeat 1 32 0 468 205 90 36 chr6 141430879 141431012 -40984230 - L1MC4 LINE L1 0 8042 7897 281 26 26 0 chr6 141431012 141431050 -40984192 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 468 205 90 36 chr6 141431050 141431082 -40984160 - L1MC4 LINE L1 -145 7897 7868 311 342 61 10 chr6 141431078 141431274 -40983968 + L1ME LINE L1 5569 5774 -347 * 829 160 0 8 chr6 141434554 141434685 -40980557 - FLAM_C SINE Alu -11 132 3 5197 115 8 16 chr6 141434985 141435805 -40979437 + L1PA16 LINE L1 5344 6157 -9 21 0 0 0 chr6 141436220 141436241 -40979001 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr6 141436247 141436280 -40978962 + (TC)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr6 141436762 141436783 -40978459 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr6 141437565 141437590 -40977652 + (TA)n Simple_repeat Simple_repeat 2 26 0 694 332 116 22 chr6 141438087 141438596 -40976646 + L1ME LINE L1 10 566 -5830 294 294 9 54 chr6 141438621 141438842 -40976400 + L1ME LINE L1 721 931 -5465 * 2787 220 80 16 chr6 141438821 141439739 -40975503 + L1ME LINE L1 4460 5435 -780 1559 174 97 0 chr6 141439739 141440037 -40975205 + MER2 DNA MER2_type 1 327 -18 258 32 0 0 chr6 141440071 141440102 -40975140 + (CA)n Simple_repeat Simple_repeat 2 32 0 305 278 0 0 chr6 141440125 141440215 -40975027 + L1MC4 LINE L1 6614 6703 -1339 345 47 0 0 chr6 141440215 141440258 -40974984 + (TA)n Simple_repeat Simple_repeat 1 43 0 912 191 13 7 chr6 141440265 141440417 -40974825 + MER70B LTR ERVL 4 156 -422 1691 226 11 8 chr6 141440419 141440778 -40974464 + MLT1A1 LTR MaLR 4 363 -2 1559 243 38 0 chr6 141440778 141441090 -40974152 + MER70A LTR ERVL 149 472 0 677 289 42 0 chr6 141441090 141441329 -40973913 + L1ME LINE L1 5437 5685 -548 26456 137 14 13 chr6 141441329 141447325 -40967917 + L1PA8A LINE L1 373 6419 -27 1281 243 112 25 chr6 141447364 141448076 -40967166 + HAL1b LINE L1 261 1121 -227 201 74 0 0 chr6 141448965 141448992 -40966250 + (T)n Simple_repeat Simple_repeat 1 27 0 212 186 51 0 chr6 141449432 141449491 -40965751 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 326 328 34 45 chr6 141449527 141449704 -40965538 + MIR SINE MIR 40 214 -48 2494 76 0 3 chr6 141449998 141450312 -40964930 + AluSq SINE Alu 1 313 0 339 309 24 8 chr6 141450350 141450473 -40964769 - L3 LINE CR1 -159 1418 1294 * 851 300 179 25 chr6 141450469 141451273 -40963969 + L2 LINE L2 2322 3268 -45 2677 208 33 24 chr6 141451293 141451842 -40963400 + MER68 LTR ERV1 9 562 0 1600 244 41 100 chr6 141452522 141453590 -40961652 + L1ME LINE L1 754 1658 -4726 472 345 20 37 chr6 141453684 141454035 -40961207 - LTR16A1 LTR ERVL -109 341 1 584 286 87 40 chr6 141454272 141455536 -40959706 - L1MC4a LINE L1 -748 5398 4632 229 280 9 37 chr6 141455540 141455647 -40959595 + L1M4 LINE L1 5012 5115 -1031 241 301 34 27 chr6 141455669 141455815 -40959427 - L1MC4a LINE L1 -1543 4603 4457 591 329 120 21 chr6 141455952 141456611 -40958631 - L1MC4a LINE L1 -1914 4232 3509 2251 94 0 0 chr6 141457353 141457641 -40957601 + AluSg1 SINE Alu 3 290 -19 282 309 3 61 chr6 141459583 141459747 -40955495 - MIR SINE MIR -58 150 2 21 36 0 0 chr6 141459864 141459892 -40955350 + AT_rich Low_complexity Low_complexity 1 28 0 287 341 65 16 chr6 141460983 141461106 -40954136 - L2 LINE L2 -3 3269 3141 318 67 0 0 chr6 141461312 141461357 -40953885 + (CA)n Simple_repeat Simple_repeat 1 45 0 802 231 71 36 chr6 141461603 141461685 -40953557 + MIR SINE MIR 18 96 -166 1229 171 158 63 chr6 141461685 141462047 -40953195 + MSTD LTR MaLR 1 396 0 802 231 71 36 chr6 141462047 141462189 -40953053 + MIR SINE MIR 96 250 -12 25 51 0 0 chr6 141462586 141462625 -40952617 + AT_rich Low_complexity Low_complexity 1 39 0 31 58 0 0 chr6 141462859 141462911 -40952331 + AT_rich Low_complexity Low_complexity 1 52 0 412 306 35 56 chr6 141463251 141463483 -40951759 + L2 LINE L2 2656 2882 -432 392 288 102 17 chr6 141463650 141463768 -40951474 + L2 LINE L2 3136 3263 -9 3847 43 0 14 chr6 141465336 141465822 -40949420 - L1PA5 LINE L1 -5 6149 5671 1838 107 37 139 chr6 141466527 141466902 -40948340 + MER1B DNA MER1_type 1 337 0 608 290 85 5 chr6 141467938 141468162 -40947080 - MIR SINE MIR 0 262 21 2583 46 0 0 chr6 141469421 141469723 -40945519 + AluY SINE Alu 1 302 -9 191 229 33 66 chr6 141470483 141470544 -40944698 + L2 LINE L2 3254 3312 -1 255 302 104 0 chr6 141470569 141470675 -40944567 + L2 LINE L2 689 805 -2509 184 241 71 71 chr6 141471064 141471176 -40944066 + L3 LINE CR1 655 766 -811 1764 201 92 28 chr6 141471675 141472109 -40943133 + MLT1C LTR MaLR 6 467 0 348 210 25 12 chr6 141473541 141473622 -40941620 + MLT1K LTR MaLR 505 586 -2 634 186 126 27 chr6 141474428 141474611 -40940631 - MIR SINE MIR -59 203 3 473 222 25 62 chr6 141474864 141475026 -40940216 + LTR16A1 LTR ERVL 272 427 -30 290 330 155 5 chr6 141475051 141475257 -40939985 + MIR SINE MIR 8 244 -18 2136 111 0 48 chr6 141476234 141476549 -40938693 - AluSg SINE Alu -10 300 1 254 158 0 0 chr6 141476778 141476816 -40938426 + MER75 DNA T2_type 463 500 -14 2645 36 0 0 chr6 141477005 141477311 -40937931 - AluY SINE Alu -4 307 2 1405 178 85 54 chr6 141477451 141477805 -40937437 + MLT1A1 LTR MaLR 1 365 0 523 263 9 0 chr6 141478249 141478363 -40936879 + MIR SINE MIR 34 148 -114 2256 105 3 0 chr6 141478372 141478666 -40936576 - AluSg SINE Alu -15 295 1 417 217 53 113 chr6 141479529 141479661 -40935581 + L1MC/D LINE L1 5217 5323 -911 2164 127 0 0 chr6 141479661 141479952 -40935290 + AluSx SINE Alu 3 293 -19 417 217 53 113 chr6 141479952 141480109 -40935133 + L1MC/D LINE L1 5323 5488 -746 30 27 0 0 chr6 141480148 141480185 -40935057 + AT_rich Low_complexity Low_complexity 1 37 0 1665 139 4 0 chr6 141480797 141481042 -40934200 + LTR28 LTR ERV1 1 246 -774 452 247 3 30 chr6 141481142 141481322 -40933920 + MER52A LTR ERV1 506 697 -323 276 283 17 33 chr6 141481403 141481523 -40933719 + L1ME4a LINE L1 4961 5078 -1068 * 524 263 25 0 chr6 141481511 141481671 -40933571 - L1 LINE L1 -2376 3770 3607 189 74 0 0 chr6 141481672 141481699 -40933543 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 445 288 132 10 chr6 141483285 141483490 -40931752 - MIR SINE MIR 0 262 33 2177 129 0 0 chr6 141483645 141483939 -40931303 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr6 141485210 141485233 -40930009 + AT_rich Low_complexity Low_complexity 1 23 0 14570 196 36 14 chr6 141485233 141485593 -40929649 - L1PB1 LINE L1 -1 6866 6516 991 85 7 7 chr6 141485593 141485746 -40929496 + (TA)n Simple_repeat Simple_repeat 1 153 0 14570 196 36 14 chr6 141485746 141491661 -40923581 - L1PB1 LINE L1 -351 6516 273 927 254 100 71 chr6 141491661 141492110 -40923132 + MLT1H LTR MaLR 86 547 -2 848 279 95 5 chr6 141492110 141492479 -40922763 + L1ME3A LINE L1 5760 6161 -9 472 303 107 26 chr6 141492531 141492960 -40922282 + L1ME4a LINE L1 5377 5840 -281 24 53 0 0 chr6 141493181 141493219 -40922023 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 141493948 141493969 -40921273 + AT_rich Low_complexity Low_complexity 1 21 0 422 280 20 0 chr6 141494317 141494417 -40920825 - MIR SINE MIR -114 148 47 279 381 22 7 chr6 141494570 141494709 -40920533 + MIR SINE MIR 3 143 -119 213 279 0 0 chr6 141494725 141494768 -40920474 + L2 LINE L2 3258 3300 -13 1001 209 193 12 chr6 141495366 141495620 -40919622 - AluJo SINE Alu -9 303 4 2691 35 0 0 chr6 141495724 141496035 -40919207 - AluY SINE Alu 0 311 1 563 146 10 10 chr6 141496531 141496627 -40918615 + MIR SINE MIR 92 187 -75 225 357 71 32 chr6 141496927 141497053 -40918189 + L2 LINE L2 3123 3253 -19 200 207 9 216 chr6 141497839 141497955 -40917287 - MER5A DNA MER1_type 0 189 98 21 57 0 0 chr6 141498458 141498493 -40916749 + AT_rich Low_complexity Low_complexity 1 35 0 1041 129 32 77 chr6 141499380 141499628 -40915614 + L1MA10 LINE L1 6096 6332 -2 424 311 43 18 chr6 141499818 141499982 -40915260 + MIR SINE MIR 40 207 -55 25 51 0 0 chr6 141500137 141500176 -40915066 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr6 141500272 141500297 -40914945 + AT_rich Low_complexity Low_complexity 1 25 0 452 245 147 18 chr6 141500311 141500474 -40914768 + L3b LINE CR1 1193 1376 -207 200 318 116 23 chr6 141500697 141500826 -40914416 - MIR SINE MIR -109 153 13 581 314 53 12 chr6 141500946 141501191 -40914051 - MIR SINE MIR -4 258 4 573 281 7 20 chr6 141501698 141501851 -40913391 - MIR3 SINE MIR -3 205 55 805 185 0 58 chr6 141503575 141503748 -40911494 - MIR SINE MIR -28 234 72 315 328 63 35 chr6 141503895 141504069 -40911173 - MIR SINE MIR -14 248 70 35 24 0 0 chr6 141504896 141504938 -40910304 + AT_rich Low_complexity Low_complexity 1 42 0 1768 150 67 55 chr6 141505009 141505370 -40909872 - Tigger7 DNA MER2_type 0 2587 2223 4552 142 29 29 chr6 141505378 141506140 -40909102 - Tigger7 DNA MER2_type -1717 770 9 296 276 19 115 chr6 141507833 141507989 -40907253 - MIR SINE MIR -95 167 27 211 347 45 28 chr6 141508070 141508246 -40906996 + L2 LINE L2 3123 3301 -12 22 35 0 0 chr6 141509750 141509779 -40905463 + AT_rich Low_complexity Low_complexity 1 29 0 186 176 0 0 chr6 141510806 141510857 -40904385 + A-rich Low_complexity Low_complexity 1 51 0 2173 84 18 3 chr6 141511777 141512062 -40903180 - AluY SINE Alu -22 289 1 279 326 104 36 chr6 141512092 141512313 -40902929 + MIR SINE MIR 8 243 -19 2900 3 0 0 chr6 141512844 141513155 -40902087 - AluYa5 SINE Alu 0 311 1 854 268 40 0 chr6 141513166 141513394 -40901848 - MIR SINE MIR -25 237 1 2236 94 0 17 chr6 141514188 141514486 -40900756 + AluSq SINE Alu 1 293 -20 202 340 112 32 chr6 141514594 141514782 -40900460 + L2 LINE L2 1234 1436 -1878 705 285 80 6 chr6 141514904 141515216 -40900026 + L1M4 LINE L1 3292 3626 -2520 696 62 0 125 chr6 141515227 141515355 -40899887 - AluSp/q SINE Alu 0 313 202 1154 246 89 34 chr6 141515355 141515795 -40899447 + L1M4 LINE L1 3626 4089 -2057 203 304 0 0 chr6 141516029 141516085 -40899157 + L2 LINE L2 2305 2360 -954 667 156 0 3 chr6 141516160 141516394 -40898848 - AluJb SINE Alu -9 303 1 254 264 0 0 chr6 141517436 141517489 -40897753 + L2 LINE L2 3201 3253 -19 21 57 0 0 chr6 141519535 141519570 -40895672 + AT_rich Low_complexity Low_complexity 1 35 0 2210 100 3 0 chr6 141520130 141520420 -40894822 + AluSx SINE Alu 1 291 -21 840 149 12 0 chr6 141520482 141520643 -40894599 + CT-rich Low_complexity Low_complexity 2 164 0 201 209 23 0 chr6 141520656 141520699 -40894543 + CT-rich Low_complexity Low_complexity 1 44 0 559 295 154 42 chr6 141520701 141521567 -40893675 - L2 LINE L2 -11 3302 2324 1983 121 3 28 chr6 141521802 141522132 -40893110 - AluSq SINE Alu 0 323 1 2446 53 0 3 chr6 141522161 141522461 -40892781 + AluY SINE Alu 1 299 -12 2516 28 0 0 chr6 141522461 141522795 -40892447 + AluY SINE Alu 1 334 0 1366 333 69 23 chr6 141522993 141523785 -40891457 - L3 LINE CR1 -21 1556 728 2039 139 3 0 chr6 141523814 141524101 -40891141 + AluSx SINE Alu 5 292 -20 2383 89 26 0 chr6 141524201 141524549 -40890693 - L1P5 LINE L1 -466 5685 5329 245 184 53 0 chr6 141525469 141525545 -40889697 + L1M4 LINE L1 2886 2965 -3181 300 363 56 28 chr6 141525584 141525763 -40889479 + L1ME LINE L1 2 185 -5885 1929 89 97 0 chr6 141526203 141526472 -40888770 - AluSg SINE Alu -15 295 1 2598 107 0 0 chr6 141527716 141528090 -40887152 + L1PA13 LINE L1 5787 6160 -3 812 142 0 16 chr6 141528104 141528231 -40887011 + AluJb SINE Alu 1 125 -187 1988 127 3 3 chr6 141528244 141528528 -40886714 + AluSx SINE Alu 1 284 -28 248 330 97 5 chr6 141528596 141528781 -40886461 + L1ME LINE L1 5618 5819 -302 1748 326 26 10 chr6 141530706 141531636 -40883606 - ERVL LTR ERVL -4343 1421 408 691 188 78 23 chr6 141531980 141532198 -40883044 - L1MEc LINE L1 -3733 2482 2253 319 184 26 7 chr6 141532207 141532359 -40882883 + (TA)n Simple_repeat Simple_repeat 2 156 0 342 292 0 25 chr6 141532384 141532504 -40882738 - L1MEc LINE L1 -4129 2267 2151 404 301 27 0 chr6 141532614 141532760 -40882482 + L1M4 LINE L1 2422 2571 -3575 * 512 250 6 12 chr6 141532747 141532911 -40882331 + L1M4 LINE L1 4563 4725 -1421 2204 98 7 0 chr6 141532931 141533228 -40882014 + AluY SINE Alu 1 299 -12 2592 36 0 0 chr6 141533228 141533529 -40881713 + AluY SINE Alu 1 301 -10 1352 333 69 23 chr6 141533761 141534553 -40880689 - L3 LINE CR1 -21 1556 728 2210 127 3 0 chr6 141534582 141534882 -40880360 + AluSx SINE Alu 5 305 -7 415 331 125 7 chr6 141534886 141535167 -40880075 - L3 LINE CR1 -1023 554 241 621 252 95 27 chr6 141535296 141535518 -40879724 - MIR SINE MIR -13 249 13 23 0 0 0 chr6 141536138 141536161 -40879081 + AT_rich Low_complexity Low_complexity 1 23 0 975 166 7 0 chr6 141536163 141536308 -40878934 - FRAM SINE Alu -30 146 1 738 224 11 29 chr6 141536578 141536752 -40878490 - MER5B DNA MER1_type 0 178 8 410 317 92 38 chr6 141537492 141537732 -40877510 + L2 LINE L2 3056 3308 -5 286 327 37 9 chr6 141537822 141537929 -40877313 + MIR SINE MIR 130 239 -23 187 317 150 33 chr6 141538116 141538236 -40877006 + MIR3 SINE MIR 15 148 -60 3202 183 39 10 chr6 141540370 141540994 -40874248 + L1M2 LINE L1 5 646 -6203 569 256 22 0 chr6 141540975 141541112 -40874130 + L1M2 LINE L1 1060 1199 -5650 * 7041 169 30 12 chr6 141541288 141544039 -40871203 + L1M2 LINE L1 1452 4251 -2597 510 246 85 22 chr6 141544119 141544343 -40870899 + MLT1G3 LTR MaLR 114 351 -179 367 223 32 0 chr6 141544343 141544437 -40870805 + MLT1G3 LTR MaLR 499 595 0 680 62 21 0 chr6 141544718 141544815 -40870427 + (GAAA)n Simple_repeat Simple_repeat 4 102 0 226 171 14 129 chr6 141544823 141544893 -40870349 + Charlie8 DNA MER1_type 130 191 -2226 1427 207 3 0 chr6 141545003 141545303 -40869939 - L1PB4 LINE L1 0 6156 5856 26 82 0 0 chr6 141545468 141545529 -40869713 + AT_rich Low_complexity Low_complexity 1 61 0 2147 106 16 0 chr6 141545763 141546066 -40869176 + AluSq SINE Alu 1 308 -5 334 277 156 65 chr6 141548359 141548698 -40866544 + L1M2 LINE L1 862 1231 -5618 252 59 0 0 chr6 141548712 141548746 -40866496 + (TCCCG)n Simple_repeat Simple_repeat 4 37 0 239 289 0 36 chr6 141548869 141548952 -40866290 + GA-rich Low_complexity Low_complexity 1 80 0 242 336 129 45 chr6 141550551 141550971 -40864271 + L2 LINE L2 2817 3271 -1 318 246 0 53 chr6 141551615 141551729 -40863513 - HAL1b LINE L1 -28 1320 1213 226 316 79 35 chr6 141552438 141552552 -40862690 - MIR SINE MIR -81 127 8 306 247 172 0 chr6 141553303 141553396 -40861846 - MIR3 SINE MIR -15 193 85 22 0 0 0 chr6 141553890 141553912 -40861330 + AT_rich Low_complexity Low_complexity 1 22 0 6873 35 1 0 chr6 141554203 141555165 -40860077 - L1PA4 LINE L1 -677 5477 4515 5554 33 0 3 chr6 141555165 141555824 -40859418 + L1PA4 LINE L1 5492 6149 -6 362 177 114 0 chr6 141556355 141556434 -40858808 - MIR SINE MIR -57 205 118 730 131 0 110 chr6 141556525 141556670 -40858572 + FLAM_C SINE Alu 5 133 0 393 70 0 0 chr6 141557000 141557057 -40858185 + (CA)n Simple_repeat Simple_repeat 1 57 0 1872 187 0 16 chr6 141557450 141557766 -40857476 + AluJb SINE Alu 2 312 0 251 234 153 45 chr6 141559452 141559563 -40855679 - L2 LINE L2 -1 3312 3190 238 245 20 0 chr6 141560867 141560965 -40854277 + CT-rich Low_complexity Low_complexity 1 100 0 910 237 45 9 chr6 141561046 141561270 -40853972 + MIR SINE MIR 20 251 -11 183 42 0 0 chr6 141562388 141562412 -40852830 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 388 360 63 3 chr6 141562642 141562945 -40852297 + HAL1 LINE L1 2 322 -2185 2143 196 32 87 chr6 141563004 141563559 -40851683 + LTR8 LTR ERV1 8 483 -244 279 0 0 0 chr6 141563559 141563590 -40851652 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2143 196 32 87 chr6 141563590 141563823 -40851419 + LTR8 LTR ERV1 483 727 0 1283 261 161 69 chr6 141563823 141564353 -40850889 + HAL1 LINE L1 390 870 -1637 1706 148 6 6 chr6 141564353 141564664 -40850578 + L1MA4 LINE L1 5985 6295 -5 1283 261 161 69 chr6 141564664 141565271 -40849971 + HAL1 LINE L1 870 1420 -1087 2319 125 11 19 chr6 141565271 141565638 -40849604 - THE1B LTR MaLR 0 364 1 1283 261 161 69 chr6 141565638 141565999 -40849243 + HAL1 LINE L1 1420 2026 -481 1906 220 67 17 chr6 141566027 141566672 -40848570 - L1M4 LINE L1 -1121 5025 4349 * 23183 163 16 16 chr6 141566659 141572514 -40842728 - L1PA10 LINE L1 -3 6480 619 1329 248 11 8 chr6 141572586 141572945 -40842297 - L1PA10 LINE L1 -5515 360 1 502 53 13 13 chr6 141572948 141573023 -40842219 + (TTTTC)n Simple_repeat Simple_repeat 4 78 0 1873 146 20 20 chr6 141573047 141573342 -40841900 - AluJo SINE Alu -17 295 1 1274 223 126 11 chr6 141573342 141573795 -40841447 - L1M4 LINE L1 -1763 4383 3879 792 304 78 22 chr6 141573941 141574444 -40840798 - L1MEd LINE L1 -5242 877 347 889 276 43 52 chr6 141574680 141575028 -40840214 + MLT1F LTR MaLR 1 345 -197 381 203 24 65 chr6 141575022 141575145 -40840097 + MLT1F LTR MaLR 450 567 0 * 672 250 44 50 chr6 141575253 141575563 -40839679 + L2 LINE L2 2906 3305 -8 2609 53 0 0 chr6 141576439 141576742 -40838500 + AluY SINE Alu 1 303 -8 194 163 0 23 chr6 141578140 141578183 -40837059 + L2 LINE L2 3265 3306 -7 3440 118 26 9 chr6 141578262 141578840 -40836402 - L1MA6 LINE L1 -1 6299 5712 312 301 0 0 chr6 141579635 141579718 -40835524 - L1MC4 LINE L1 -1339 6703 6621 2337 112 22 25 chr6 141580482 141580847 -40834395 + THE1B LTR MaLR 1 364 0 208 296 14 14 chr6 141582143 141582214 -40833028 - MER5A DNA MER1_type -30 159 89 1535 95 4 70 chr6 141582248 141582489 -40832753 - AluSx SINE Alu -87 225 1 1734 168 0 43 chr6 141583468 141583771 -40831471 + AluJb SINE Alu 1 290 -22 1849 183 0 7 chr6 141583970 141584271 -40830971 - AluJb SINE Alu -13 299 1 1262 206 18 103 chr6 141584776 141585175 -40830067 - MLT1A1 LTR MaLR 0 365 1 705 303 28 8 chr6 141585306 141585560 -40829682 + MIR SINE MIR 2 260 -2 3249 131 48 0 chr6 141587564 141587761 -40827481 - MER41C LTR ERV1 -3 551 365 222 37 0 0 chr6 141587761 141587788 -40827454 + (TG)n Simple_repeat Simple_repeat 2 28 0 3249 131 48 0 chr6 141587788 141588116 -40827126 - MER41C LTR ERV1 -189 365 1 355 235 0 0 chr6 141588133 141588201 -40827041 + MER69 DNA AcHobo 8 75 -2451 1237 176 162 12 chr6 141588660 141589006 -40826236 + MER69 DNA AcHobo 2085 2482 -44 3309 227 45 45 chr6 141589132 141590176 -40825066 - L1M4 LINE L1 -1288 4858 3815 2160 141 0 0 chr6 141590185 141590490 -40824752 - AluSx SINE Alu -7 305 1 685 234 63 87 chr6 141590804 141591056 -40824186 + MIR SINE MIR 3 248 -14 2269 222 54 0 chr6 141591069 141591551 -40823691 + MER67D LTR ERV1 2 509 -5 251 269 0 0 chr6 141593795 141593847 -40821395 + L2 LINE L2 3221 3272 0 263 258 113 57 chr6 141593995 141594154 -40821088 - MLT1K LTR MaLR -326 262 95 338 266 139 59 chr6 141594824 141595061 -40820181 - L1MDa LINE L1 -3699 2430 2175 336 264 130 30 chr6 141595643 141595775 -40819467 - L1MDa LINE L1 -4608 1521 1404 2175 117 0 10 chr6 141595775 141596082 -40819160 + AluSx SINE Alu 1 304 -8 336 264 130 30 chr6 141596082 141596248 -40818994 - L1MDa LINE L1 -4725 1404 1193 1504 191 0 0 chr6 141596259 141596510 -40818732 - AluJo SINE Alu -61 251 1 665 201 0 52 chr6 141596519 141596653 -40818589 - FLAM_C SINE Alu -6 127 1 633 256 102 24 chr6 141596669 141597080 -40818162 - L1MDa LINE L1 -4919 1200 758 352 316 25 6 chr6 141597341 141597499 -40817743 - L1MDa LINE L1 -5956 163 3 490 279 127 12 chr6 141597500 141597744 -40817498 - L1M4 LINE L1 -2697 3449 3178 2711 197 57 21 chr6 141597824 141598314 -40816928 + L1MDa LINE L1 1312 1838 -4702 2139 125 7 0 chr6 141598314 141598618 -40816624 - AluSx SINE Alu -6 306 1 2711 197 57 21 chr6 141598618 141598843 -40816399 + L1MDa LINE L1 1838 2053 -4487 * 3797 248 39 43 chr6 141598842 141600511 -40814731 + L1MDa LINE L1 3719 5411 -1129 4509 183 50 53 chr6 141600618 141601666 -40813576 + L1MD1 LINE L1 4233 5268 -974 210 91 0 0 chr6 141601666 141601699 -40813543 + (CA)n Simple_repeat Simple_repeat 2 34 0 4509 183 50 53 chr6 141601699 141602671 -40812571 + L1MD1 LINE L1 5268 6241 -1 257 276 38 67 chr6 141604536 141604641 -40810601 + L2 LINE L2 3193 3294 -19 225 94 0 0 chr6 141604674 141604706 -40810536 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 237 253 0 67 chr6 141604955 141605030 -40810212 + MLT2E LTR ERVL 31 100 -528 23 0 0 0 chr6 141606970 141606993 -40808249 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 141608806 141608828 -40806414 + AT_rich Low_complexity Low_complexity 1 22 0 2213 105 0 16 chr6 141609442 141609746 -40805496 - AluSg SINE Alu -11 299 1 360 0 0 0 chr6 141610719 141610759 -40804483 + (TG)n Simple_repeat Simple_repeat 2 41 0 1590 170 50 0 chr6 141611076 141611353 -40803889 + AluJo SINE Alu 1 291 -21 5702 245 120 72 chr6 141612940 141614580 -40800662 + L2 LINE L2 355 2268 -1045 287 337 0 0 chr6 141614580 141614663 -40800579 - MER58 DNA MER1_type -2142 278 196 5702 245 120 72 chr6 141614663 141615762 -40799480 + L2 LINE L2 2268 3313 0 346 291 0 27 chr6 141617169 141617279 -40797963 + MIR SINE MIR 156 262 0 1953 145 7 3 chr6 141617689 141617985 -40797257 + AluSx SINE Alu 1 297 -15 27 73 0 0 chr6 141618516 141618571 -40796671 + AT_rich Low_complexity Low_complexity 1 55 0 201 121 0 0 chr6 141618863 141618896 -40796346 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr6 141618950 141618980 -40796262 + AT_rich Low_complexity Low_complexity 1 30 0 1888 156 0 10 chr6 141621009 141621317 -40793925 + AluSx SINE Alu 1 305 -7 365 260 0 0 chr6 141621492 141621569 -40793673 + MER2 DNA MER2_type 268 344 -1 1817 174 7 0 chr6 141621914 141622218 -40793024 + AluJb SINE Alu 1 306 -6 1917 113 0 0 chr6 141623092 141623349 -40791893 - AluSg SINE Alu -14 296 40 974 248 129 42 chr6 141624017 141624569 -40790673 + L1MC4 LINE L1 7131 7730 -312 449 292 35 80 chr6 141625385 141625673 -40789569 + L1M4 LINE L1 4882 5156 -990 566 95 0 0 chr6 141626087 141626171 -40789071 + L1PA7 LINE L1 6071 6154 0 1751 163 104 6 chr6 141628077 141628432 -40786810 + MLT1B LTR MaLR 1 390 0 2267 95 0 3 chr6 141628498 141628793 -40786449 + AluSq SINE Alu 20 313 0 22 56 0 0 chr6 141629106 141629142 -40786100 + AT_rich Low_complexity Low_complexity 1 36 0 2409 233 50 24 chr6 141629838 141630541 -40784701 - L1MC3 LINE L1 -1465 6600 5880 8271 243 59 30 chr6 141631127 141631543 -40783699 - L1MC3 LINE L1 -758 5668 5265 785 209 6 55 chr6 141631543 141631725 -40783517 - FAM SINE Alu -2 173 1 8271 243 59 30 chr6 141631725 141632686 -40782556 - L1MC3 LINE L1 -1161 5265 4333 1421 278 30 11 chr6 141632686 141633121 -40782121 - LTR47B LTR ERVL 0 443 1 8271 243 59 30 chr6 141633121 141635637 -40779605 - L1MC3 LINE L1 -2093 4333 1823 570 278 134 41 chr6 141635831 141636249 -40778993 + LTR16A1 LTR ERVL 1 457 0 2083 169 33 3 chr6 141636386 141636777 -40778465 + MER57A LTR ERV1 1 403 0 513 193 11 0 chr6 141636777 141636865 -40778377 + MER57A-int LTR ERV1 1 89 -7448 436 295 163 37 chr6 141636992 141637317 -40777925 + HERVL LTR ERVL 3029 3394 -2260 373 322 44 33 chr6 141637347 141637527 -40777715 + HERVL LTR ERVL 4054 4235 -1419 251 301 34 48 chr6 141638113 141638259 -40776983 + HERVL LTR ERVL 4712 4855 -909 286 286 153 32 chr6 141638495 141638684 -40776558 + HERVL LTR ERVL 5220 5431 -333 219 314 136 17 chr6 141639761 141639879 -40775363 + L2 LINE L2 3177 3308 -5 314 194 16 0 chr6 141639999 141640061 -40775181 - L2 LINE L2 0 3272 3210 377 356 62 7 chr6 141640189 141640335 -40774907 - MIR3 SINE MIR -21 187 34 386 232 268 6 chr6 141640666 141640834 -40774408 + MER58C DNA MER1_type 4 215 0 951 172 50 48 chr6 141640904 141641198 -40774044 + MER2 DNA MER2_type 3 345 0 343 291 183 9 chr6 141642535 141642747 -40772495 + MIR SINE MIR 11 259 -3 503 221 103 14 chr6 141642794 141642843 -40772399 - L1MA10 LINE L1 0 6334 6286 2629 190 81 60 chr6 141642843 141643611 -40771631 - L1ME1 LINE L1 -53 6113 5330 * 5497 224 71 55 chr6 141643610 141644438 -40770804 - L1ME1 LINE L1 -1597 4549 3736 2129 112 3 19 chr6 141644438 141644752 -40770490 - AluSx SINE Alu -3 309 1 5497 224 71 55 chr6 141644752 141645077 -40770165 - L1ME1 LINE L1 -2410 3736 3418 2820 71 3 0 chr6 141645077 141645443 -40769799 + L1PA8 LINE L1 5806 6172 0 5497 224 71 55 chr6 141645443 141646346 -40768896 - L1ME1 LINE L1 -2728 3418 2458 1986 150 3 0 chr6 141646706 141647000 -40768242 + AluSx SINE Alu 1 295 -17 260 217 235 42 chr6 141647025 141647191 -40768051 + L1MC4 LINE L1 7702 7899 -143 4793 64 11 8 chr6 141647199 141648321 -40766921 - MER11A LTR ERVK 0 1266 1 335 252 28 35 chr6 141648341 141648490 -40766752 + L1MC4 LINE L1 7681 7785 0 304 75 0 0 chr6 141649451 141649491 -40765751 - L1PA16 LINE L1 -9 6157 6118 2202 119 44 39 chr6 141649491 141649853 -40765389 - THE1B LTR MaLR 0 364 1 2806 89 2 37 chr6 141649858 141650261 -40764981 - THE1B-int LTR MaLR -6 1574 1186 249 319 176 20 chr6 141650325 141650626 -40764616 - L2 LINE L2 -795 2519 2172 2611 109 0 8 chr6 141650805 141651172 -40764070 - THE1B LTR MaLR 0 364 1 26 50 0 0 chr6 141651390 141651430 -40763812 + AT_rich Low_complexity Low_complexity 1 40 0 688 130 0 0 chr6 141651750 141651858 -40763384 + AluSg/x SINE Alu 200 307 -3 11737 104 30 22 chr6 141651859 141652438 -40762804 - MER57-int LTR ERV1 -2362 5175 4602 2309 73 0 16 chr6 141652438 141652751 -40762491 + AluY SINE Alu 1 308 -3 11737 104 30 22 chr6 141652751 141654070 -40761172 - MER57-int LTR ERV1 -2935 4602 3261 251 114 0 0 chr6 141654120 141654155 -40761087 - MER57-int LTR ERV1 -3377 2569 2535 1076 99 12 47 chr6 141654231 141654402 -40760840 - MER57-int LTR ERV1 -3377 2569 2405 1404 164 16 26 chr6 141654714 141655019 -40760223 + L1MA5 LINE L1 5999 6300 0 781 188 0 38 chr6 141655153 141655343 -40759899 - MER3 DNA MER1_type -44 165 2 326 191 119 95 chr6 141655673 141655799 -40759443 + L2 LINE L2 3185 3313 0 393 279 81 12 chr6 141655871 141656043 -40759199 + L2 LINE L2 2886 3069 -244 227 167 0 0 chr6 141656214 141656250 -40758992 + MIR SINE MIR 216 251 -11 24 0 0 0 chr6 141656829 141656853 -40758389 + AT_rich Low_complexity Low_complexity 1 24 0 382 335 103 5 chr6 141657541 141657726 -40757516 - MIR SINE MIR -52 210 8 187 306 69 14 chr6 141658104 141658176 -40757066 - L2 LINE L2 -10 3262 3187 25 51 0 0 chr6 141660335 141660374 -40754868 + AT_rich Low_complexity Low_complexity 1 39 0 26 50 0 0 chr6 141662420 141662460 -40752782 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr6 141662887 141662908 -40752334 + AT_rich Low_complexity Low_complexity 1 21 0 208 227 23 0 chr6 141663670 141663714 -40751528 + (CGGGG)n Simple_repeat Simple_repeat 4 48 0 1582 171 11 0 chr6 141663934 141664208 -40751034 + AluSx SINE Alu 31 307 -5 555 43 0 0 chr6 141665943 141666013 -40749229 + (CACAG)n Simple_repeat Simple_repeat 3 72 0 275 359 30 12 chr6 141666444 141666611 -40748631 + L2 LINE L2 545 714 -2600 270 0 0 0 chr6 141666775 141666805 -40748437 + (CA)n Simple_repeat Simple_repeat 2 31 0 556 213 52 22 chr6 141667590 141667726 -40747516 - ERVL LTR ERVL -2311 3453 3314 697 343 46 8 chr6 141667859 141668268 -40746974 - ERVL LTR ERVL -2139 2857 2676 514 233 33 40 chr6 141668762 141668972 -40746270 + MLT1H LTR MaLR 30 296 -253 225 258 134 10 chr6 141669042 141669139 -40746103 + MLT1H LTR MaLR 439 547 -2 1754 187 34 58 chr6 141669172 141669726 -40745516 - MER67C LTR ERV1 -8 506 1 180 77 0 0 chr6 141670618 141670644 -40744598 + (TTTAG)n Simple_repeat Simple_repeat 3 28 0 391 288 92 7 chr6 141670747 141670900 -40744342 + L2 LINE L2 994 1159 -2155 991 276 160 26 chr6 141670902 141671425 -40743817 + L2 LINE L2 2723 3312 -1 409 259 33 8 chr6 141671488 141671607 -40743635 + MIR SINE MIR 36 164 -44 2508 112 6 8 chr6 141672206 141672571 -40742671 + THE1B LTR MaLR 1 364 0 776 315 87 39 chr6 141673200 141673906 -40741336 - L2 LINE L2 -86 3227 2482 21 0 0 0 chr6 141675127 141675148 -40740094 + AT_rich Low_complexity Low_complexity 1 21 0 258 325 103 0 chr6 141675522 141675639 -40739603 - MIR3 SINE MIR -6 202 74 1474 223 150 42 chr6 141675752 141676439 -40738803 + L1ME3A LINE L1 5410 6170 0 250 272 158 9 chr6 141676841 141676955 -40738287 + MER117 DNA MER1_type 30 160 -37 39 88 0 0 chr6 141677091 141677193 -40738049 + AT_rich Low_complexity Low_complexity 1 102 0 249 276 122 22 chr6 141677758 141677988 -40737254 + L2 LINE L2 1182 1521 -1793 602 258 109 31 chr6 141678117 141678346 -40736896 + MLT1J LTR MaLR 3 249 -262 2044 292 160 27 chr6 141678366 141679604 -40735638 + L2 LINE L2 1875 3309 -4 403 346 97 55 chr6 141679600 141679941 -40735301 - L3 LINE CR1 -4 1573 1209 * 2141 89 28 7 chr6 141679941 141680232 -40735010 - AluSp SINE Alu -16 297 1 403 346 97 55 chr6 141680232 141680324 -40734918 - L3 LINE CR1 -368 1209 1122 180 135 0 0 chr6 141681329 141681366 -40733876 + (A)n Simple_repeat Simple_repeat 1 37 0 2489 48 7 0 chr6 141681496 141681791 -40733451 + AluY SINE Alu 1 297 -14 205 397 85 14 chr6 141682763 141682904 -40732338 + L2 LINE L2 3117 3267 -5 285 125 21 0 chr6 141682941 141682989 -40732253 + MADE1 DNA Mariner 1 49 -31 252 246 0 0 chr6 141682982 141683043 -40732199 - MADE1 DNA Mariner -17 63 3 * 376 138 0 0 chr6 141683190 141683248 -40731994 - MADE1 DNA Mariner -17 63 6 234 372 8 50 chr6 141683676 141683797 -40731445 - L2 LINE L2 -20 3252 3137 202 321 107 36 chr6 141684178 141684346 -40730896 - MIR SINE MIR -69 193 14 234 0 0 0 chr6 141684827 141684853 -40730389 + (A)n Simple_repeat Simple_repeat 1 26 0 3620 171 18 47 chr6 141684863 141686387 -40728855 + L1PB3 LINE L1 4673 6151 -3 1491 196 40 30 chr6 141686385 141686758 -40728484 - L1MB8 LINE L1 -6 6172 5796 * 1557 179 36 20 chr6 141687598 141687900 -40727342 - AluJb SINE Alu -5 307 1 284 325 187 5 chr6 141688729 141688932 -40726310 - L2 LINE L2 -842 2472 2233 188 0 74 0 chr6 141689033 141689060 -40726182 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 141689149 141689170 -40726072 + AT_rich Low_complexity Low_complexity 1 21 0 513 328 63 30 chr6 141689316 141689679 -40725563 - L2 LINE L2 -1241 2073 1699 1813 190 62 47 chr6 141690029 141690498 -40724744 - MLT1D LTR MaLR 0 505 30 1232 214 122 7 chr6 141741883 141742154 -40673088 - AluJb SINE Alu 0 302 1 813 279 54 41 chr6 141742154 141742541 -40672701 - L2 LINE L2 -595 2719 2328 539 323 9 70 chr6 141742548 141742777 -40672465 + MIR SINE MIR 20 234 -28 190 269 84 67 chr6 141742962 141743081 -40672161 + L2 LINE L2 3192 3312 -1 389 283 44 40 chr6 141743161 141743387 -40671855 + HAL1 LINE L1 1410 1636 -871 23 54 0 0 chr6 141743439 141743476 -40671766 + AT_rich Low_complexity Low_complexity 1 37 0 329 269 45 8 chr6 141744254 141744388 -40670854 + L1ME4a LINE L1 5978 6116 -5 488 234 55 50 chr6 141746221 141746422 -40668820 + MER112 DNA MER1_type 1 202 -58 2194 96 0 7 chr6 141746491 141746796 -40668446 - AluSq SINE Alu 0 308 6 217 273 30 20 chr6 141746867 141746966 -40668276 + A-rich Low_complexity Low_complexity 3 102 0 420 300 76 51 chr6 141747149 141747497 -40667745 + MLT1H LTR MaLR 72 404 -5 329 252 0 137 chr6 141747881 141747956 -40667286 + L2 LINE L2 3199 3250 -63 2395 67 0 16 chr6 141747956 141748272 -40666970 + AluY SINE Alu 1 311 0 329 252 0 137 chr6 141748272 141748327 -40666915 + L2 LINE L2 3250 3311 -2 1588 141 25 113 chr6 141749159 141749486 -40665756 - AluJb SINE Alu -11 301 4 380 217 130 0 chr6 141749488 141749580 -40665662 + L2 LINE L2 3208 3311 -2 2572 178 22 10 chr6 141750096 141750591 -40664651 + MER67C LTR ERV1 5 505 -205 259 182 0 0 chr6 141750591 141750635 -40664607 - MLT2D LTR ERVL 0 414 371 1604 148 36 56 chr6 141750637 141750940 -40664302 + MLT1A1 LTR MaLR 3 299 -66 1496 203 102 46 chr6 141750940 141751379 -40663863 - MLT2B1 LTR ERVL -56 464 1 1030 144 123 0 chr6 141751379 141751566 -40663676 + MER67C LTR ERV1 501 710 0 2099 160 23 18 chr6 141751784 141752172 -40663070 - MLT1B LTR MaLR 0 390 1 233 340 0 0 chr6 141752528 141752622 -40662620 + MIR3 SINE MIR 113 206 -2 189 107 0 0 chr6 141752622 141752650 -40662592 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 190 284 80 68 chr6 141752678 141752766 -40662476 - L2 LINE L2 -35 3278 3190 643 228 28 7 chr6 141753724 141753869 -40661373 - MER58A DNA MER1_type -30 194 47 265 319 125 7 chr6 141754872 141755016 -40660226 - MIR SINE MIR -6 256 96 2102 98 7 7 chr6 141755142 141755427 -40659815 + AluSc SINE Alu 6 290 -19 194 316 0 0 chr6 141755874 141755931 -40659311 + MIR SINE MIR 201 257 -5 345 240 16 8 chr6 141756596 141756725 -40658517 + GA-rich Low_complexity Low_complexity 3 132 0 277 372 49 26 chr6 141756726 141756952 -40658290 - MIR SINE MIR -20 242 12 22 0 0 30 chr6 141756964 141756981 -40658261 + AT_rich Low_complexity Low_complexity 1 18 -14 1992 157 0 3 chr6 141756981 141757281 -40657961 + AluJb SINE Alu 1 299 -13 22 0 0 30 chr6 141757281 141757296 -40657946 + AT_rich Low_complexity Low_complexity 18 32 0 826 265 67 48 chr6 141759017 141759368 -40655874 + MLT1I LTR MaLR 51 409 0 1487 156 16 62 chr6 141759409 141759717 -40655525 - AluJo SINE Alu -16 296 3 1941 160 2 115 chr6 141759823 141760268 -40654974 - MER47B DNA MER2_type -20 398 4 2280 129 21 8 chr6 141760334 141760713 -40654529 - L1PA16 LINE L1 -14 6152 5769 24 0 0 0 chr6 141761201 141761225 -40654017 + AT_rich Low_complexity Low_complexity 1 24 0 1210 185 58 0 chr6 141761990 141762233 -40653009 - Tigger2 DNA MER2_type 0 2718 2462 * 4284 151 30 8 chr6 141762227 141762964 -40652278 - Tigger2 DNA MER2_type -1965 753 1 1869 37 0 5 chr6 141763218 141763436 -40651806 - AluY SINE Alu -94 217 1 2349 90 0 7 chr6 141763782 141764092 -40651150 + AluSc SINE Alu 2 309 0 1807 166 24 34 chr6 141764506 141764646 -40650596 - L1 LINE L1 -1170 4976 4836 2037 161 86 8 chr6 141764646 141765043 -40650199 - MSTA LTR MaLR 0 428 1 1807 166 24 34 chr6 141765043 141765181 -40650061 - L1 LINE L1 -1310 4836 4701 186 43 0 0 chr6 141765181 141765204 -40650038 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1807 166 24 34 chr6 141765204 141765339 -40649903 - L1 LINE L1 -1445 4701 4566 5793 106 25 3 chr6 141765341 141766497 -40648745 + L1PA16 LINE L1 4992 6157 -9 21 36 0 0 chr6 141766716 141766744 -40648498 + AT_rich Low_complexity Low_complexity 1 28 0 2119 87 7 42 chr6 141766957 141767267 -40647975 + AluSp SINE Alu 1 299 -14 1123 243 118 69 chr6 141767553 141768060 -40647182 + MLT1F LTR MaLR 11 542 0 2075 139 75 3 chr6 141768840 141769199 -40646043 - MLT1B LTR MaLR -3 387 3 551 194 23 0 chr6 141771034 141771163 -40644079 + L1MA7 LINE L1 6159 6290 -1 29 47 0 0 chr6 141771169 141771212 -40644030 + AT_rich Low_complexity Low_complexity 1 43 0 284 214 43 0 chr6 141771823 141771893 -40643349 + L2 LINE L2 2584 2656 -658 2268 277 119 47 chr6 141771944 141772532 -40642710 + HAL1 LINE L1 2 547 -1960 895 130 15 80 chr6 141772532 141772670 -40642572 - MER53 DNA DNA 0 189 66 2144 99 7 3 chr6 141772670 141772963 -40642279 + AluSx SINE Alu 1 294 -18 895 130 15 80 chr6 141772963 141773024 -40642218 - MER53 DNA DNA -123 66 3 2268 277 119 47 chr6 141773024 141773624 -40641618 + HAL1 LINE L1 547 1275 -1232 1008 283 67 10 chr6 141773663 141774052 -40641190 + HAL1 LINE L1 1468 1878 -629 380 265 86 13 chr6 141774072 141774223 -40641019 + HAL1 LINE L1 1709 1870 -637 24 0 0 0 chr6 141774603 141774627 -40640615 + AT_rich Low_complexity Low_complexity 1 24 0 612 276 96 8 chr6 141774627 141774866 -40640376 + MER46C DNA MER2_type 6 265 -73 31 0 0 0 chr6 141775149 141775180 -40640062 + AT_rich Low_complexity Low_complexity 1 31 0 1983 121 11 0 chr6 141775398 141775671 -40639571 - AluSx SINE Alu -16 296 21 255 61 0 0 chr6 141775776 141775809 -40639433 + (CA)n Simple_repeat Simple_repeat 2 34 0 642 366 98 44 chr6 141776013 141777214 -40638028 + L2 LINE L2 1969 3247 -25 1918 125 13 36 chr6 141778220 141778525 -40636717 + AluSx SINE Alu 1 298 -14 558 202 44 60 chr6 141778525 141778708 -40636534 + MER53 DNA DNA 10 189 0 1673 168 31 25 chr6 141781082 141781368 -40633874 + AluJo SINE Alu 5 292 -20 2162 120 3 0 chr6 141781376 141781667 -40633575 + AluSp SINE Alu 1 292 -21 7767 172 88 10 chr6 141781686 141782347 -40632895 + L1M4c LINE L1 5 613 -5771 191 35 0 35 chr6 141782347 141782376 -40632866 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7767 172 88 10 chr6 141782376 141783264 -40631978 + L1M4c LINE L1 613 1675 -4709 318 106 0 0 chr6 141783284 141783331 -40631911 + (GGGGA)n Simple_repeat Simple_repeat 4 50 0 2250 92 0 7 chr6 141783331 141783623 -40631619 + AluY SINE Alu 5 294 -17 270 143 0 0 chr6 141783642 141783691 -40631551 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 227 406 52 5 chr6 141783758 141783950 -40631292 - L2 LINE L2 -576 2738 2538 203 189 0 0 chr6 141784899 141784936 -40630306 - L2 LINE L2 -324 2989 2953 25 0 0 0 chr6 141786804 141786829 -40628413 + AT_rich Low_complexity Low_complexity 1 25 0 1115 126 0 48 chr6 141787876 141788083 -40627159 + L1 LINE L1 3972 4168 -1978 * 2650 193 16 2 chr6 141788082 141788585 -40626657 + L1MA2 LINE L1 8 517 -7048 1741 153 65 14 chr6 141788585 141788939 -40626303 + MER1B DNA MER1_type 1 339 0 3998 184 20 4 chr6 141788940 141789647 -40625595 + L1MA2 LINE L1 511 1228 -6337 14681 156 31 13 chr6 141789648 141793452 -40621790 + L1MA2 LINE L1 2971 6890 -833 2175 119 3 0 chr6 141793452 141793746 -40621496 + AluSq SINE Alu 3 297 -16 14681 156 31 13 chr6 141793746 141794596 -40620646 + L1MA2 LINE L1 6890 7723 0 725 269 14 27 chr6 141795111 141795334 -40619908 + L2 LINE L2 2464 2683 -631 814 251 58 159 chr6 141795336 141795889 -40619353 + L2 LINE L2 2817 3313 0 1850 136 39 3 chr6 141795895 141796181 -40619061 + AluSx SINE Alu 1 296 -16 2055 126 0 3 chr6 141796550 141796855 -40618387 - AluSx SINE Alu 0 304 1 5640 56 1 0 chr6 141796886 141797580 -40617662 - L1PA7 LINE L1 -8 6146 5452 252 200 20 0 chr6 141798004 141798054 -40617188 + MIR3 SINE MIR 158 208 0 21 0 0 0 chr6 141798461 141798482 -40616760 + AT_rich Low_complexity Low_complexity 1 21 0 437 167 0 44 chr6 141798549 141798639 -40616603 - L1PB4 LINE L1 0 6156 6071 2288 119 3 0 chr6 141798645 141798955 -40616287 - AluSp SINE Alu -2 311 1 1767 189 0 0 chr6 141799358 141799655 -40615587 + AluJb SINE Alu 1 297 -15 1026 208 156 7 chr6 141800738 141801007 -40614235 - MLT1C LTR MaLR -3 464 156 365 189 77 98 chr6 141801021 141801067 -40614175 + L1MCa LINE L1 575 620 -5806 1833 115 0 4 chr6 141801067 141801327 -40613915 - AluSq SINE Alu -7 306 48 365 189 77 98 chr6 141801327 141801423 -40613819 + L1MCa LINE L1 620 714 -5712 695 171 8 0 chr6 141801425 141801554 -40613688 - MLT1C LTR MaLR -314 153 24 22 35 0 0 chr6 141801590 141801619 -40613623 + AT_rich Low_complexity Low_complexity 1 29 0 1144 268 55 18 chr6 141801713 141802150 -40613092 - MLT1F1 LTR MaLR -11 556 104 921 227 83 18 chr6 141802753 141803031 -40612211 + L1MCa LINE L1 28 323 -6103 695 216 62 77 chr6 141803035 141803308 -40611934 + L1MCa LINE L1 486 754 -5672 1850 107 7 60 chr6 141803379 141803705 -40611537 + AluSx SINE Alu 1 310 0 3666 176 48 79 chr6 141804397 141805294 -40609948 - MER21A LTR ERV1 -28 903 35 1391 164 25 104 chr6 141805721 141806039 -40609203 - AluJo SINE Alu -9 293 1 2199 108 0 3 chr6 141806730 141807062 -40608180 - AluSq SINE Alu 0 331 1 1881 104 0 94 chr6 141807099 141807323 -40607919 + AluSx SINE Alu 6 191 -121 4328 203 20 22 chr6 141807323 141808280 -40606962 - LTR5 LTR ERVK -14 955 1 1881 104 0 94 chr6 141808280 141808383 -40606859 + AluSx SINE Alu 191 302 -10 2490 170 51 24 chr6 141808582 141809088 -40606154 - MLT2B1 LTR ERVL 0 520 1 535 225 0 36 chr6 141810519 141810657 -40604585 - MER112 DNA MER1_type -7 253 121 23 78 0 0 chr6 141810673 141810724 -40604518 + AT_rich Low_complexity Low_complexity 1 51 0 5670 126 7 4 chr6 141811955 141812923 -40602319 - L1PA15 LINE L1 -1 6164 5195 2005 144 3 13 chr6 141813649 141813962 -40601280 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr6 141815918 141815941 -40599301 + AT_rich Low_complexity Low_complexity 1 23 0 205 164 86 49 chr6 141815941 141816002 -40599240 + MIR SINE MIR 98 164 -65 349 263 67 46 chr6 141816077 141816271 -40598971 + L3 LINE CR1 1196 1393 -184 185 243 0 0 chr6 141816505 141816542 -40598700 + L2 LINE L2 3218 3254 -18 190 244 44 78 chr6 141816843 141816933 -40598309 - L3 LINE CR1 -294 1283 1197 242 358 73 2 chr6 141817789 141817941 -40597301 - MIR SINE MIR -19 189 30 2256 102 0 3 chr6 141818169 141818462 -40596780 - AluSx SINE Alu -20 292 1 1779 169 18 0 chr6 141818473 141818757 -40596485 - AluJo SINE Alu -23 289 1 249 73 0 0 chr6 141818906 141818947 -40596295 - AluSx SINE Alu 0 299 259 1532 123 5 0 chr6 141818947 141819151 -40596091 - AluSx SINE Alu -107 205 1 1929 157 33 2 chr6 141819151 141820616 -40594626 + L1PA16 LINE L1 4583 6157 -9 299 335 198 27 chr6 141821970 141822227 -40593015 - L3 LINE CR1 -86 1491 1191 3257 248 101 78 chr6 141823593 141823970 -40591272 + L2 LINE L2 1242 1609 -1705 1933 154 0 7 chr6 141823970 141824283 -40590959 - AluSx SINE Alu 0 311 1 2235 120 0 0 chr6 141824283 141824582 -40590660 - AluSx SINE Alu -13 299 1 3257 248 101 78 chr6 141824582 141825657 -40589585 + L2 LINE L2 1609 2745 -569 2213 101 3 3 chr6 141825657 141825975 -40589267 + AluSp SINE Alu 1 318 0 3257 248 101 78 chr6 141825975 141826214 -40589028 + L2 LINE L2 2745 2977 -337 377 134 15 0 chr6 141826598 141826665 -40588577 - AluSp SINE Alu -115 188 121 2967 113 0 101 chr6 141826665 141827286 -40587956 - L1P LINE L1 -759 5387 4830 1829 173 0 3 chr6 141827512 141827796 -40587446 - AluJb SINE Alu -12 300 18 249 219 188 0 chr6 141828288 141828352 -40586890 + L2 LINE L2 3196 3271 -1 2440 57 3 0 chr6 141828557 141828875 -40586367 + AluY SINE Alu 1 311 0 2281 119 7 0 chr6 141829333 141829643 -40585599 + AluSx SINE Alu 1 312 0 432 163 22 33 chr6 141831626 141831718 -40583524 - MER63 DNA MER1_type 0 1060 970 2129 132 0 0 chr6 141831718 141832021 -40583221 - AluSx SINE Alu -9 303 1 429 213 19 19 chr6 141832047 141832155 -40583087 - MER63 DNA MER1_type -328 734 1 364 260 142 7 chr6 141832528 141832681 -40582561 - MIR SINE MIR -50 212 39 770 73 0 0 chr6 141833729 141833838 -40581404 + L1MA3 LINE L1 6197 6305 0 2053 136 3 16 chr6 141833841 141834157 -40581085 + AluSx SINE Alu 1 312 0 1083 148 0 7 chr6 141835289 141835444 -40579798 + FRAM SINE Alu 1 154 -22 786 269 104 59 chr6 141835614 141836123 -40579119 + MLT1H LTR MaLR 13 544 -5 2017 129 23 16 chr6 141836863 141836995 -40578247 + AluSx SINE Alu 1 131 -181 183 80 0 0 chr6 141836995 141837020 -40578222 + (TA)n Simple_repeat Simple_repeat 1 25 0 2017 129 23 16 chr6 141837020 141837197 -40578045 + AluSx SINE Alu 131 312 0 239 0 32 0 chr6 141837501 141837532 -40577710 + (TG)n Simple_repeat Simple_repeat 2 33 0 1085 233 60 23 chr6 141838359 141838660 -40576582 + MLT1F1 LTR MaLR 1 312 -255 592 270 31 6 chr6 141838662 141838825 -40576417 + MIR SINE MIR 75 241 -21 213 67 44 22 chr6 141839448 141839493 -40575749 + CT-rich Low_complexity Low_complexity 1 46 0 1846 121 81 4 chr6 141839558 141839830 -40575412 - AluY SINE Alu -18 293 1 504 280 186 42 chr6 141840122 141840175 -40575067 + Charlie7 DNA MER1_type 101 145 -2467 2195 120 0 3 chr6 141840175 141840484 -40574758 + AluSx SINE Alu 1 308 -4 504 280 186 42 chr6 141840484 141840784 -40574458 + Charlie7 DNA MER1_type 145 505 -2107 22 0 0 0 chr6 141840994 141841016 -40574226 + AT_rich Low_complexity Low_complexity 1 22 0 1683 168 27 10 chr6 141841397 141841689 -40573553 + AluJo SINE Alu 1 297 -15 2126 121 16 3 chr6 141841874 141842180 -40573062 - AluSx SINE Alu -2 310 1 27 49 0 0 chr6 141842548 141842589 -40572653 + AT_rich Low_complexity Low_complexity 1 41 0 1671 255 115 18 chr6 141842727 141843397 -40571845 + L2 LINE L2 1593 2327 -987 2231 136 3 0 chr6 141844503 141844848 -40570394 - AluSg SINE Alu 0 346 1 294 204 23 80 chr6 141845277 141845365 -40569877 + L2 LINE L2 3196 3278 -35 261 167 0 0 chr6 141845445 141845499 -40569743 + CT-rich Low_complexity Low_complexity 3 56 0 2322 94 0 7 chr6 141845660 141845967 -40569275 + AluSx SINE Alu 1 305 -7 294 255 41 31 chr6 141846448 141846546 -40568696 - MIR3 SINE MIR -10 198 100 1876 184 0 3 chr6 141846671 141846981 -40568261 - AluJb SINE Alu -3 309 1 2148 130 0 0 chr6 141847887 141848195 -40567047 + AluSx SINE Alu 5 312 0 275 117 67 17 chr6 141849295 141849355 -40565887 + MER116 DNA Mariner 15 77 -3 611 176 84 30 chr6 141850440 141850571 -40564671 + MIR SINE MIR 11 148 -114 520 204 3 1 chr6 141850943 141851073 -40564169 + L1MD1 LINE L1 5482 5616 -548 26 74 0 0 chr6 141851498 141851552 -40563690 + AT_rich Low_complexity Low_complexity 1 54 0 1982 103 48 4 chr6 141852742 141853047 -40562195 - AluSx SINE Alu 0 317 1 2077 169 133 55 chr6 141853126 141853240 -40562002 + L1MD1 LINE L1 5593 5697 -545 207 0 0 0 chr6 141853240 141853263 -40561979 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2077 169 133 55 chr6 141853263 141853751 -40561491 + L1MD1 LINE L1 5697 6242 0 2240 99 31 0 chr6 141854079 141854371 -40560871 - AluSc SINE Alu -8 301 1 377 294 163 15 chr6 141855076 141855419 -40559823 + L2 LINE L2 2354 2747 -567 677 308 88 26 chr6 141855497 141855805 -40559437 + L2 LINE L2 2987 3313 0 2241 110 0 7 chr6 141856961 141857261 -40557981 + AluSx SINE Alu 3 300 -12 24 77 0 0 chr6 141857868 141857920 -40557322 + AT_rich Low_complexity Low_complexity 1 52 0 204 125 0 0 chr6 141858007 141858039 -40557203 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 333 369 11 28 chr6 141858144 141858315 -40556927 + MIR SINE MIR 24 192 -66 2406 108 0 0 chr6 141858315 141858621 -40556621 + AluSq SINE Alu 1 306 -7 22 35 0 0 chr6 141858960 141858989 -40556253 + AT_rich Low_complexity Low_complexity 1 29 0 465 299 146 6 chr6 141860021 141860185 -40555057 - MIR SINE MIR -29 233 47 2009 144 0 7 chr6 141861132 141861424 -40553818 + AluSx SINE Alu 1 290 -22 1946 190 6 8 chr6 141861500 141861864 -40553378 + MLT1A1 LTR MaLR 1 363 -2 200 35 35 0 chr6 141862187 141862216 -40553026 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 956 158 0 0 chr6 141862427 141862560 -40552682 + FRAM SINE Alu 1 132 -44 400 289 117 0 chr6 141863213 141863341 -40551901 - MER5A DNA MER1_type -1 188 46 255 263 61 0 chr6 141863343 141863442 -40551800 - HERVL40 LTR ERVL -1768 3762 3658 1797 147 0 67 chr6 141863445 141863759 -40551483 + AluSx SINE Alu 3 295 -17 2140 96 0 3 chr6 141863937 141864242 -40551000 + AluY SINE Alu 1 304 0 1759 173 107 10 chr6 141864404 141864814 -40550428 - LTR7 LTR ERV1 0 450 1 21 36 0 0 chr6 141864953 141864981 -40550261 + AT_rich Low_complexity Low_complexity 1 28 0 2356 129 22 3 chr6 141866229 141866586 -40548656 - THE1B LTR MaLR 0 364 1 1539 164 8 22 chr6 141866597 141866865 -40548377 - AluJo SINE Alu -9 303 40 2254 89 38 3 chr6 141867071 141867363 -40547879 - AluSg SINE Alu -6 304 3 24 53 0 0 chr6 141867567 141867605 -40547637 + AT_rich Low_complexity Low_complexity 1 38 0 2303 114 0 0 chr6 141867982 141868290 -40546952 + AluSg SINE Alu 1 308 -2 198 393 119 0 chr6 141868294 141868378 -40546864 - L2 LINE L2 -221 3051 2958 2179 130 0 0 chr6 141868411 141868711 -40546531 + AluSx SINE Alu 1 300 -12 1292 127 21 8 chr6 141868771 141869008 -40546234 - L1MA8 LINE L1 0 6291 6052 2274 122 0 0 chr6 141869283 141869579 -40545663 - AluSx SINE Alu -15 297 2 2010 126 3 20 chr6 141869688 141869981 -40545261 - AluSx SINE Alu -24 288 1 330 315 129 37 chr6 141870655 141870957 -40544285 + L1MC4a LINE L1 4934 5252 -894 282 196 149 34 chr6 141870965 141871113 -40544129 + L1MC4a LINE L1 5293 5457 -2351 860 241 103 47 chr6 141871129 141871522 -40543720 + L1MC4a LINE L1 5533 5815 -351 180 111 0 0 chr6 141871548 141871575 -40543667 + (A)n Simple_repeat Simple_repeat 1 27 0 294 50 0 0 chr6 141871624 141871664 -40543578 + (TG)n Simple_repeat Simple_repeat 2 41 0 857 150 0 8 chr6 141872284 141872459 -40542783 + FLAM_C SINE Alu 2 175 0 2430 51 0 32 chr6 141872770 141873081 -40542161 + AluY SINE Alu 2 302 -9 2526 78 0 0 chr6 141874385 141874694 -40540548 + AluY SINE Alu 1 309 -2 2157 134 0 7 chr6 141875044 141875351 -40539891 + AluSx SINE Alu 1 305 -7 183 162 0 0 chr6 141875431 141875468 -40539774 + A-rich Low_complexity Low_complexity 1 37 0 318 266 168 0 chr6 141875694 141875837 -40539405 + MLT1K LTR MaLR 147 313 -275 21 36 0 0 chr6 141876453 141876481 -40538761 + AT_rich Low_complexity Low_complexity 1 28 0 2132 122 0 0 chr6 141878452 141878740 -40536502 + AluSx SINE Alu 2 289 -23 1020 113 11 11 chr6 141878742 141878919 -40536323 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 181 233 120 98 chr6 141879011 141879144 -40536098 - MIR SINE MIR -1 261 126 2038 119 0 14 chr6 141879342 141879649 -40535593 + AluSx SINE Alu 1 303 0 1614 169 91 8 chr6 141879948 141880395 -40534847 + LTR64 LTR ERVK 2 546 -12 2459 81 0 7 chr6 141880601 141880908 -40534334 - AluSx SINE Alu -6 306 2 195 42 0 0 chr6 141880908 141880932 -40534310 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1667 161 7 33 chr6 141881220 141881519 -40533723 + AluJb SINE Alu 1 291 -21 251 250 100 20 chr6 141881885 141881985 -40533257 + MIR SINE MIR 91 198 -64 2260 108 0 13 chr6 141882436 141882572 -40532670 + AluSq SINE Alu 1 137 -176 2452 55 0 23 chr6 141882572 141882882 -40532360 + AluY SINE Alu 1 303 -8 2260 108 0 13 chr6 141882882 141883060 -40532182 + AluSq SINE Alu 137 311 -2 22 56 0 0 chr6 141883386 141883422 -40531820 + AT_rich Low_complexity Low_complexity 1 36 0 2532 48 3 0 chr6 141883823 141884133 -40531109 + AluY SINE Alu 1 311 0 334 244 175 31 chr6 141885611 141885771 -40529471 + MIR SINE MIR 3 185 -77 1817 83 0 17 chr6 141885913 141886154 -40529088 + AluSq SINE Alu 1 237 -76 324 212 0 59 chr6 141886237 141886322 -40528920 + AluJ/FRAM SINE Alu 218 297 -5 233 424 52 18 chr6 141886385 141886614 -40528628 - L2 LINE L2 -50 3222 2986 2188 77 45 0 chr6 141886618 141886904 -40528338 + AluSg SINE Alu 1 299 -11 2440 96 3 0 chr6 141886969 141887281 -40527961 + AluSp SINE Alu 1 313 0 292 261 76 8 chr6 141887412 141887531 -40527711 - HAL1 LINE L1 -1199 1308 1182 902 196 43 0 chr6 141887533 141887717 -40527525 - AluJo SINE Alu -1 311 120 1523 224 136 26 chr6 141888061 141888516 -40526726 - MLT1D LTR MaLR 0 505 1 214 161 0 0 chr6 141888604 141888635 -40526607 + L2 LINE L2 3012 3042 -271 699 204 0 34 chr6 141888641 141888788 -40526454 - FLAM_C SINE Alu -1 142 1 2410 92 3 0 chr6 141888802 141889107 -40526135 - AluSp SINE Alu -7 306 1 471 285 100 47 chr6 141889193 141889533 -40525709 - LTR67 LTR ERVL -2 555 198 2898 266 39 12 chr6 141889557 141890662 -40524580 - L1M4 LINE L1 -1409 4737 3603 1785 256 63 76 chr6 141890688 141891731 -40523511 - L1ME LINE L1 -4128 2133 1079 2081 145 3 3 chr6 141891731 141892034 -40523208 - AluSq SINE Alu -10 303 1 1785 256 63 76 chr6 141892034 141892720 -40522522 - L1ME LINE L1 -5182 1079 443 2174 131 0 0 chr6 141892720 141893018 -40522224 - AluSg SINE Alu -6 304 7 1785 256 63 76 chr6 141893018 141893164 -40522078 - L1ME LINE L1 -5818 443 297 3039 63 5 0 chr6 141893164 141893558 -40521684 + MLT2A1 LTR ERVL 1 396 -48 2233 115 0 0 chr6 141893559 141893847 -40521395 + AluSx SINE Alu 1 288 -24 221 109 62 0 chr6 141893847 141893911 -40521331 + (TA)n Simple_repeat Simple_repeat 1 68 0 335 59 20 0 chr6 141893913 141893964 -40521278 + MLT2A1 LTR ERVL 391 442 -2 570 240 54 75 chr6 141893964 141894243 -40520999 - L1ME LINE L1 -5767 303 31 213 185 0 0 chr6 141894244 141894298 -40520944 + MER5C DNA MER1_type 216 269 -55 255 321 105 43 chr6 141894851 141895013 -40520229 - MIR3 SINE MIR -14 194 23 2416 84 0 0 chr6 141895336 141895634 -40519608 + AluSx SINE Alu 1 298 -14 412 111 0 0 chr6 141895665 141895719 -40519523 + AluSq SINE Alu 126 179 -134 403 149 11 23 chr6 141895863 141895950 -40519292 + FLAM_C SINE Alu 58 143 0 2138 98 42 0 chr6 141896593 141896879 -40518363 - AluSg SINE Alu -12 298 1 220 271 34 0 chr6 141896914 141896973 -40518269 - L2 LINE L2 -4 3268 3208 357 213 280 7 chr6 141897057 141897207 -40518035 - MIR SINE MIR -37 225 35 2374 166 47 13 chr6 141897352 141897799 -40517443 + MLT1C LTR MaLR 1 462 -5 553 313 92 9 chr6 141898014 141898241 -40517001 + MIR SINE MIR 16 261 -1 2093 111 34 3 chr6 141898429 141898726 -40516516 + AluSq SINE Alu 1 306 -7 200 297 108 0 chr6 141900025 141900099 -40515143 + L2 LINE L2 3173 3254 -18 1992 74 22 4 chr6 141900289 141900558 -40514684 + AluSq SINE Alu 1 274 -39 193 179 18 18 chr6 141901297 141901353 -40513889 + (CTGGGG)n Simple_repeat Simple_repeat 3 58 0 1982 115 36 13 chr6 141902334 141902639 -40512603 - AluSx SINE Alu 0 312 1 1706 132 52 11 chr6 141904499 141904771 -40510471 - AluSq SINE Alu -30 283 1 244 119 0 24 chr6 141905235 141905277 -40509965 - Alu SINE Alu -175 127 87 1562 126 144 11 chr6 141905367 141905638 -40509604 - AluSg1 SINE Alu -2 307 1 246 337 33 22 chr6 141906345 141906437 -40508805 + L2 LINE L2 2947 3039 -233 210 150 0 0 chr6 141906716 141906756 -40508486 + (T)n Simple_repeat Simple_repeat 1 40 0 2132 92 10 7 chr6 141906832 141907126 -40508116 + AluSg SINE Alu 1 295 -15 228 264 19 0 chr6 141907998 141908051 -40507191 + CT-rich Low_complexity Low_complexity 2 55 0 2338 85 16 7 chr6 141908330 141908636 -40506606 - AluSg SINE Alu -1 309 1 2408 86 3 6 chr6 141908943 141909256 -40505986 + AluSx SINE Alu 1 312 0 26 0 0 0 chr6 141909395 141909421 -40505821 + AT_rich Low_complexity Low_complexity 1 26 0 2602 48 0 6 chr6 141910062 141910375 -40504867 - AluY SINE Alu 0 311 1 22 0 0 0 chr6 141910497 141910519 -40504723 + AT_rich Low_complexity Low_complexity 1 22 0 242 200 188 35 chr6 141910674 141910759 -40504483 + L2 LINE L2 3201 3298 -15 1853 121 89 11 chr6 141912230 141912511 -40502731 + AluSx SINE Alu 1 303 -9 300 264 0 0 chr6 141912538 141912610 -40502632 + GA-rich Low_complexity Low_complexity 1 72 0 2409 87 0 0 chr6 141912771 141913069 -40502173 + AluSc SINE Alu 1 298 -11 2563 40 0 3 chr6 141913323 141913624 -40501618 + AluY SINE Alu 1 300 -11 24 0 0 0 chr6 141913626 141913650 -40501592 + AT_rich Low_complexity Low_complexity 1 24 0 2294 124 0 0 chr6 141913697 141914003 -40501239 - AluSx SINE Alu -6 306 1 2152 108 0 7 chr6 141914712 141915034 -40500208 - AluSx SINE Alu 0 320 1 289 289 44 11 chr6 141915049 141915139 -40500103 - MIR3 SINE MIR -25 183 91 2159 99 3 3 chr6 141915245 141915528 -40499714 - AluSc SINE Alu -26 283 1 182 323 73 47 chr6 141915808 141916000 -40499242 + L3b LINE CR1 1129 1325 -258 27 62 0 0 chr6 141916372 141916420 -40498822 + AT_rich Low_complexity Low_complexity 1 48 0 564 283 96 17 chr6 141918658 141918888 -40496354 + MIR SINE MIR 15 262 0 21 36 0 0 chr6 141918909 141918937 -40496305 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 141920224 141920245 -40494997 + AT_rich Low_complexity Low_complexity 1 21 0 388 326 14 0 chr6 141920247 141920385 -40494857 + L2 LINE L2 1073 1212 -2102 454 207 17 86 chr6 141920391 141920455 -40494787 - L2 LINE L2 -1831 1483 1416 2491 50 7 3 chr6 141920455 141920757 -40494485 - AluY SINE Alu -8 303 1 454 207 17 86 chr6 141920757 141920866 -40494376 - L2 LINE L2 -1898 1416 1322 3937 261 63 24 chr6 141920889 141921558 -40493684 + L2 LINE L2 1718 2359 -954 2381 99 0 10 chr6 141921558 141921872 -40493370 - AluSx SINE Alu -1 311 1 3937 261 63 24 chr6 141921872 141922519 -40492723 + L2 LINE L2 2359 3082 -231 251 119 0 0 chr6 141922541 141922583 -40492659 - U3 snRNA snRNA -175 42 1 1231 77 0 16 chr6 141922613 141922796 -40492446 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2185 114 14 0 chr6 141922815 141923112 -40492130 - AluSx SINE Alu -11 301 1 299 342 67 0 chr6 141923227 141923347 -40491895 - L2 LINE L2 -213 3059 2932 226 250 0 17 chr6 141923593 141923653 -40491589 - MLT1K LTR MaLR -348 240 182 2085 85 0 0 chr6 141923747 141924017 -40491225 + AluY SINE Alu 41 310 -1 1738 161 0 27 chr6 141924029 141924354 -40490888 + AluJb SINE Alu 1 317 0 228 256 292 7 chr6 141924415 141924552 -40490690 + LTR33 LTR ERVL 44 219 -302 513 276 24 18 chr6 141924595 141924765 -40490477 + LTR33 LTR ERVL 351 521 0 184 298 88 0 chr6 141925608 141925665 -40489577 + L2 LINE L2 3211 3272 0 1049 185 46 76 chr6 141927185 141927422 -40487820 + MER33 DNA MER1_type 2 228 -2357 1764 143 38 0 chr6 141927422 141927687 -40487555 + AluSx SINE Alu 1 275 -37 1049 185 46 76 chr6 141927687 141927778 -40487464 + MER33 DNA MER1_type 228 320 -4 2111 126 16 10 chr6 141927847 141928157 -40487085 + AluSx SINE Alu 1 312 0 398 252 15 67 chr6 141928190 141928325 -40486917 + MER5A DNA MER1_type 61 188 -1 1343 165 44 11 chr6 141928512 141928785 -40486457 - L1MA8 LINE L1 -5 6286 6005 585 178 153 0 chr6 141929143 141929261 -40485981 - AluJo SINE Alu -176 136 1 701 265 63 38 chr6 141929717 141929955 -40485287 - MIR SINE MIR -2 260 17 254 171 0 0 chr6 141931506 141931547 -40483695 + MER5A DNA MER1_type 1 41 -148 1069 196 85 57 chr6 141931549 141931789 -40483453 + MLT2B1 LTR ERVL 10 242 -278 2109 129 0 0 chr6 141931789 141932075 -40483167 + AluSx SINE Alu 1 286 -26 209 95 0 24 chr6 141932080 141932122 -40483120 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1069 196 85 57 chr6 141932122 141932206 -40483036 + MLT2B1 LTR ERVL 245 349 -171 231 167 0 0 chr6 141932245 141932287 -40482955 + (CA)n Simple_repeat Simple_repeat 2 43 0 334 39 0 77 chr6 141932287 141932339 -40482903 + MLT2C2 LTR ERVL 417 464 0 7337 41 0 3 chr6 141932383 141933490 -40481752 - L1PA4 LINE L1 -2 6153 5047 833 37 0 0 chr6 141933490 141933599 -40481643 + L1P LINE L1 4662 4770 -1376 357 259 47 0 chr6 141933608 141933693 -40481549 + MER5A DNA MER1_type 101 189 0 258 32 0 0 chr6 141933956 141933987 -40481255 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 333 262 86 53 chr6 141933991 141934123 -40481119 - L2 LINE L2 -18 3295 3154 989 201 94 73 chr6 141934123 141934452 -40480790 + MER46C DNA MER2_type 3 338 0 333 262 86 53 chr6 141934452 141934506 -40480736 - L2 LINE L2 -159 3154 3103 2188 113 10 0 chr6 141935450 141935750 -40479492 - AluSx SINE Alu -9 303 1 301 353 26 26 chr6 141936057 141936213 -40479029 - L3 LINE CR1 -437 1140 985 460 98 0 0 chr6 141937554 141937615 -40477627 - AluSg SINE Alu -17 293 233 1290 122 0 11 chr6 141937615 141937795 -40477447 - AluSg SINE Alu -131 179 2 1877 138 0 47 chr6 141938041 141938363 -40476879 + AluSx SINE Alu 1 308 0 1523 167 24 31 chr6 141938390 141938684 -40476558 + AluJb SINE Alu 6 297 -15 207 0 0 0 chr6 141938685 141938708 -40476534 + (TA)n Simple_repeat Simple_repeat 1 23 0 2211 123 0 3 chr6 141940368 141940669 -40474573 - AluSg SINE Alu -10 300 1 1021 239 32 0 chr6 141941219 141941466 -40473776 + MER34 LTR ERV1 11 265 -277 1918 124 32 90 chr6 141941500 141941934 -40473308 + MSTB1 LTR MaLR 24 432 0 576 212 11 2 chr6 141941948 141942128 -40473114 + MER34 LTR ERV1 315 539 -3 1110 108 0 0 chr6 141942773 141942931 -40472311 + AluY SINE Alu 150 307 -4 241 284 45 34 chr6 141943026 141943114 -40472128 - L2 LINE L2 -2 3270 3182 519 254 133 18 chr6 141943173 141943338 -40471904 + MIR SINE MIR 28 211 -51 241 212 61 83 chr6 141943559 141943691 -40471551 + MER5A DNA MER1_type 13 141 -48 182 317 21 97 chr6 141943723 141943868 -40471374 - L2 LINE L2 -203 3069 2936 263 282 23 92 chr6 141944358 141944489 -40470753 + L2 LINE L2 3190 3311 -2 21 36 0 0 chr6 141946590 141946618 -40468624 + AT_rich Low_complexity Low_complexity 1 28 0 277 312 127 32 chr6 141946825 141946982 -40468260 - L3 LINE CR1 -859 718 547 191 333 32 0 chr6 141947090 141947153 -40468089 - L3 LINE CR1 -1037 540 476 184 271 0 34 chr6 141948154 141948213 -40467029 - L2 LINE L2 0 3313 3257 2411 95 0 6 chr6 141948310 141948625 -40466617 - AluSq SINE Alu 0 313 1 1978 135 0 17 chr6 141949280 141949292 -40465950 - AluSx SINE Alu -19 293 282 186 71 0 0 chr6 141949292 141949320 -40465922 + (TTTAG)n Simple_repeat Simple_repeat 2 29 0 1978 135 0 17 chr6 141949320 141949604 -40465638 - AluSx SINE Alu -30 282 2 309 328 34 0 chr6 141949607 141949726 -40465516 - MIR SINE MIR -48 214 92 1453 172 0 23 chr6 141951096 141951357 -40463885 + AluJb SINE Alu 54 308 -4 315 0 0 0 chr6 141951386 141951421 -40463821 + (CA)n Simple_repeat Simple_repeat 2 36 0 343 250 198 9 chr6 141951736 141951852 -40463390 - MER5A DNA MER1_type -26 163 26 224 311 68 29 chr6 141952507 141952610 -40462632 + MIR SINE MIR 12 118 -144 207 355 21 43 chr6 141953616 141953802 -40461440 - L2 LINE L2 -578 2736 2555 230 213 0 12 chr6 141954739 141954819 -40460423 + CT-rich Low_complexity Low_complexity 2 80 0 851 303 128 35 chr6 141955868 141955976 -40459266 + L2 LINE L2 1511 1607 -1707 1740 202 0 6 chr6 141955976 141956288 -40458954 - AluJo SINE Alu -2 310 1 851 303 128 35 chr6 141956288 141956638 -40458604 + L2 LINE L2 1607 2012 -1302 1504 271 142 13 chr6 141956638 141957461 -40457781 + L2 LINE L2 2328 3312 -1 298 291 118 24 chr6 141957834 141957961 -40457281 + MIR SINE MIR 53 191 -71 361 192 50 108 chr6 141957969 141958089 -40457153 + L2 LINE L2 3200 3312 -1 228 296 25 0 chr6 141958073 141958154 -40457088 + MIR SINE MIR 172 254 -8 * 1576 187 40 4 chr6 141958156 141958434 -40456808 + AluJo SINE Alu 4 291 -21 204 248 257 44 chr6 141958918 141959031 -40456211 + MIR3 SINE MIR 5 141 -67 1873 147 65 31 chr6 141959109 141959462 -40455780 + MLT1A1 LTR MaLR 1 365 0 39 38 0 0 chr6 141960517 141960570 -40454672 + AT_rich Low_complexity Low_complexity 1 53 0 715 299 66 33 chr6 141960729 141961275 -40453967 - L1ME4a LINE L1 -28 6093 5530 252 0 0 0 chr6 141961323 141961351 -40453891 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 342 244 47 8 chr6 141961682 141961809 -40453433 - L1MC4 LINE L1 0 8042 7911 273 146 0 0 chr6 141961816 141961864 -40453378 + (TA)n Simple_repeat Simple_repeat 2 49 0 279 310 8 8 chr6 141961887 141962016 -40453226 - L1MC4 LINE L1 -150 7892 7764 21 57 0 0 chr6 141962016 141962051 -40453191 + AT_rich Low_complexity Low_complexity 1 35 0 2251 113 0 0 chr6 141962051 141962342 -40452900 - AluSq SINE Alu -22 291 1 415 116 74 18 chr6 141963173 141963275 -40451967 + MER61E LTR ERV1 1 112 -484 273 203 0 0 chr6 141963356 141963415 -40451827 + LTR28 LTR ERV1 144 202 -818 234 222 175 0 chr6 141963420 141963483 -40451759 + MER51A LTR ERV1 208 281 -353 553 241 34 12 chr6 141963539 141963781 -40451461 + MER61D LTR ERV1 335 1232 -29 1857 174 3 7 chr6 141965496 141965794 -40449448 - AluSx SINE Alu -15 297 1 21 0 0 0 chr6 141967098 141967119 -40448123 + AT_rich Low_complexity Low_complexity 1 21 0 218 349 63 31 chr6 141967832 141967982 -40447260 - MIR SINE MIR -58 150 16 2316 107 0 0 chr6 141968116 141968414 -40446828 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr6 141968961 141968982 -40446260 + AT_rich Low_complexity Low_complexity 1 21 0 498 266 100 79 chr6 141970326 141970555 -40444687 - MIR SINE MIR -27 235 2 185 337 124 0 chr6 141970655 141970744 -40444498 + L2 LINE L2 3104 3203 -69 576 244 84 57 chr6 141971080 141971308 -40443934 + L1MC5 LINE L1 7360 7605 -356 1435 178 70 4 chr6 141971308 141971578 -40443664 + AluJb SINE Alu 1 288 -24 576 244 84 57 chr6 141971578 141971755 -40443487 + L1MC5 LINE L1 7605 7776 -185 615 287 65 24 chr6 141972005 141972504 -40442738 - MLT1G1 LTR MaLR -5 590 10 2573 47 0 0 chr6 141972605 141972904 -40442338 - AluY SINE Alu -10 301 3 206 274 113 16 chr6 141973638 141973700 -40441542 - L2 LINE L2 0 3272 3205 380 312 127 17 chr6 141973756 141973929 -40441313 - L2 LINE L2 -177 3095 2904 741 178 0 0 chr6 141974152 141974281 -40440961 + FLAM_C SINE Alu 11 139 -4 24 32 0 0 chr6 141974284 141974315 -40440927 + AT_rich Low_complexity Low_complexity 1 31 0 183 296 106 53 chr6 141974388 141974672 -40440570 - L2 LINE L2 -707 2607 2309 183 156 0 0 chr6 141975388 141975420 -40439822 + (CAG)n Simple_repeat Simple_repeat 1 32 0 547 270 38 19 chr6 141975431 141975590 -40439652 - MIR SINE MIR -31 231 70 7522 129 6 29 chr6 141976279 141977649 -40437593 - L1P LINE L1 -3597 2549 1211 1197 69 0 13 chr6 141977653 141977812 -40437430 + L1PA8 LINE L1 6010 6166 -6 2672 10 0 3 chr6 141978121 141978418 -40436824 - AluYa5 SINE Alu -15 296 1 2219 131 0 0 chr6 141978568 141978865 -40436377 + AluSx SINE Alu 1 297 -15 2394 55 10 0 chr6 141979041 141979331 -40435911 + AluY SINE Alu 1 293 -18 2218 100 28 0 chr6 141982276 141982566 -40432676 + AluY SINE Alu 1 298 -13 385 321 57 7 chr6 141982738 141982878 -40432364 - MIR SINE MIR -93 169 23 1761 125 81 0 chr6 141984453 141984725 -40430517 + AluSx SINE Alu 1 294 -18 1728 175 10 10 chr6 141985654 141985962 -40429280 + AluJb SINE Alu 1 308 -4 975 148 49 38 chr6 141986006 141986189 -40429053 + MER5A DNA MER1_type 2 186 -3 2112 118 0 0 chr6 141986747 141987036 -40428206 - AluSx SINE Alu -19 293 5 402 21 0 0 chr6 141987933 141987980 -40427262 + (CA)n Simple_repeat Simple_repeat 2 48 0 288 242 47 31 chr6 141989816 141989944 -40425298 - MLT1L LTR MaLR -8 607 478 2008 142 10 6 chr6 141990053 141990387 -40424855 - AluSx SINE Alu 0 312 1 1753 46 0 5 chr6 141990741 141990957 -40424285 + L1PA7 LINE L1 5938 6152 -2 7537 108 13 0 chr6 141990965 141992081 -40423161 - HSMAR1 DNA Mariner -13 1274 144 43 64 0 0 chr6 141992081 141992159 -40423083 + AT_rich Low_complexity Low_complexity 1 78 0 753 123 0 0 chr6 141992164 141992286 -40422956 - HSMAR1 DNA Mariner -1165 122 1 230 313 31 0 chr6 141992435 141992499 -40422743 + L2 LINE L2 3239 3304 -9 24 32 0 0 chr6 141992807 141992838 -40422404 + AT_rich Low_complexity Low_complexity 1 31 0 862 207 94 15 chr6 141994292 141994495 -40420747 - MER20 DNA MER1_type 0 219 1 279 157 83 46 chr6 141994746 141994854 -40420388 - L1ME4a LINE L1 -3 6118 6007 384 327 84 29 chr6 141994933 141995208 -40420034 + MLT1I LTR MaLR 64 353 -56 27 81 0 0 chr6 141995340 141995402 -40419840 + AT_rich Low_complexity Low_complexity 1 62 0 2175 119 0 3 chr6 141996613 141996907 -40418335 + AluSp SINE Alu 2 294 -19 1118 272 128 26 chr6 141997353 141997886 -40417356 - L2 LINE L2 -1418 1896 1310 2140 125 0 3 chr6 141997933 141998228 -40417014 - AluSx SINE Alu -18 294 1 1440 254 63 40 chr6 141998641 141999118 -40416124 + LTR40a LTR ERVL 32 519 0 206 255 0 0 chr6 141999210 141999261 -40415981 + T-rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr6 142000101 142000130 -40415112 + AT_rich Low_complexity Low_complexity 1 29 0 2043 127 6 16 chr6 142000175 142000490 -40414752 - AluSx SINE Alu 0 312 1 2372 52 7 0 chr6 142000745 142001034 -40414208 - AluY SINE Alu -20 291 1 1669 194 41 0 chr6 142001142 142001435 -40413807 - AluJo SINE Alu -7 305 1 358 210 84 77 chr6 142001621 142001764 -40413478 - L2 LINE L2 -96 3217 3074 196 389 18 18 chr6 142001765 142001932 -40413310 + L2 LINE L2 2685 2851 -463 21 36 0 0 chr6 142002315 142002343 -40412899 + AT_rich Low_complexity Low_complexity 1 28 0 211 341 63 24 chr6 142002347 142002473 -40412769 + L2 LINE L2 3138 3268 -4 708 285 106 25 chr6 142002648 142002883 -40412359 - MIR SINE MIR -8 254 1 1811 140 81 0 chr6 142003610 142003895 -40411347 + AluSx SINE Alu 1 308 -4 607 280 21 5 chr6 142004336 142004522 -40410720 + L2 LINE L2 2369 2557 -757 322 290 0 30 chr6 142004529 142004629 -40410613 + L2 LINE L2 3213 3309 -4 23 33 0 0 chr6 142005298 142005328 -40409914 + AT_rich Low_complexity Low_complexity 1 30 0 24 85 0 0 chr6 142007672 142007731 -40407511 + AT_rich Low_complexity Low_complexity 1 59 0 5627 80 18 22 chr6 142007731 142007966 -40407276 - L1MA1 LINE L1 -5 6297 6063 2168 125 10 0 chr6 142007966 142008262 -40406980 - AluSx SINE Alu -13 299 1 5627 80 18 22 chr6 142008262 142008860 -40406382 - L1MA1 LINE L1 -239 6063 5467 190 370 87 11 chr6 142011507 142011599 -40403643 + MIR3 SINE MIR 1 99 -109 387 0 0 0 chr6 142011622 142011665 -40403577 + (TA)n Simple_repeat Simple_repeat 1 43 0 182 88 0 29 chr6 142011834 142011868 -40403374 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 23 0 0 0 chr6 142011973 142011996 -40403246 + AT_rich Low_complexity Low_complexity 1 23 0 1012 189 0 0 chr6 142012293 142012452 -40402790 + AluJb SINE Alu 137 295 -17 792 263 26 5 chr6 142012484 142012674 -40402568 + MIR SINE MIR 7 200 -62 195 129 0 0 chr6 142013257 142013288 -40401954 + (CA)n Simple_repeat Simple_repeat 1 31 0 302 305 34 25 chr6 142013493 142013611 -40401631 + MIR SINE MIR 59 177 -85 24 67 0 0 chr6 142014999 142015044 -40400198 + AT_rich Low_complexity Low_complexity 1 45 0 2093 95 57 0 chr6 142015206 142015489 -40399753 - AluSx SINE Alu -6 306 8 213 39 0 0 chr6 142016122 142016148 -40399094 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2139 135 0 0 chr6 142016175 142016479 -40398763 - AluSx SINE Alu -8 304 1 194 259 74 0 chr6 142016556 142016610 -40398632 - MIR SINE MIR -8 254 197 1764 301 101 11 chr6 142016630 142017371 -40397871 + L3 LINE CR1 646 1453 -124 225 0 0 0 chr6 142017588 142017613 -40397629 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 357 24 0 0 chr6 142017612 142017654 -40397588 + (CA)n Simple_repeat Simple_repeat 1 42 0 359 292 17 8 chr6 142018164 142018284 -40396958 + CT-rich Low_complexity Low_complexity 3 123 0 345 100 0 0 chr6 142018867 142018917 -40396325 + (TG)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr6 142020070 142020092 -40395150 + AT_rich Low_complexity Low_complexity 1 22 0 1313 221 42 30 chr6 142020927 142021329 -40393913 + MLT1C LTR MaLR 53 459 -8 2160 136 0 3 chr6 142022088 142022396 -40392846 + AluSg SINE Alu 1 307 -3 2210 117 43 0 chr6 142022669 142022968 -40392274 + AluSx SINE Alu 1 312 0 24 32 0 0 chr6 142024669 142024700 -40390542 + AT_rich Low_complexity Low_complexity 1 31 0 180 125 0 0 chr6 142024816 142024848 -40390394 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2260 95 0 14 chr6 142024970 142025266 -40389976 - AluY SINE Alu -19 292 1 2381 163 39 7 chr6 142025553 142025964 -40389278 + MSTB LTR MaLR 3 426 0 8926 193 9 5 chr6 142025964 142027608 -40387634 + MSTB-int LTR MaLR 1 1651 0 2377 158 39 7 chr6 142027608 142028019 -40387223 + MSTB LTR MaLR 1 424 -2 2408 57 0 0 chr6 142028394 142028690 -40386552 + AluY SINE Alu 1 296 -15 650 197 7 35 chr6 142028696 142028838 -40386404 + FRAM SINE Alu 1 137 -39 539 312 106 8 chr6 142028854 142029091 -40386151 - MIR SINE MIR -2 260 1 227 305 78 27 chr6 142029146 142029622 -40385620 + L1ME4a LINE L1 4882 5381 -765 32 67 0 0 chr6 142029809 142029869 -40385373 + AT_rich Low_complexity Low_complexity 1 60 0 439 257 45 20 chr6 142029871 142030073 -40385169 + L1ME4a LINE L1 5690 5896 -225 31 26 0 0 chr6 142030164 142030202 -40385040 + AT_rich Low_complexity Low_complexity 1 38 0 4240 130 7 17 chr6 142030917 142031045 -40384197 + L1MA4 LINE L1 5168 5296 -1004 243 0 0 0 chr6 142031045 142031072 -40384170 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4240 130 7 17 chr6 142031072 142031087 -40384155 + L1MA4 LINE L1 5296 5310 -990 2142 120 20 0 chr6 142031087 142031379 -40383863 + AluSx SINE Alu 3 300 -12 4240 130 7 17 chr6 142031379 142032076 -40383166 + L1MA4 LINE L1 5310 5994 -306 340 164 31 62 chr6 142032067 142032153 -40383089 + L1MB4 LINE L1 6057 6140 -40 * 2195 108 0 3 chr6 142032153 142032475 -40382767 + AluSx SINE Alu 1 321 0 340 164 31 62 chr6 142032475 142032515 -40382727 + L1MB4 LINE L1 6140 6180 0 2113 113 7 7 chr6 142035122 142035415 -40379827 + AluSx SINE Alu 1 293 -19 672 305 120 6 chr6 142035533 142035890 -40379352 + LTR33A LTR ERVL 64 461 -62 203 170 21 0 chr6 142036367 142036414 -40378828 + GA-rich Low_complexity Low_complexity 1 48 0 328 247 32 65 chr6 142036539 142036693 -40378549 - MLT1L LTR MaLR -43 572 424 729 275 57 37 chr6 142037046 142037290 -40377952 - MIR SINE MIR 0 262 14 981 254 4 25 chr6 142037447 142037691 -40377551 + MER8 DNA MER2_type 1 239 0 330 194 321 22 chr6 142037746 142037880 -40377362 - MER5A DNA MER1_type 0 189 16 1383 217 95 35 chr6 142037937 142038338 -40376904 - MER63B DNA MER1_type -6 430 6 360 295 36 9 chr6 142039932 142040044 -40375198 + MIR SINE MIR 2 116 -146 315 235 40 74 chr6 142040064 142040213 -40375029 - MIR SINE MIR -16 246 103 319 333 0 22 chr6 142040214 142040304 -40374938 + MIR SINE MIR 9 96 -166 22 0 0 0 chr6 142041360 142041382 -40373860 + AT_rich Low_complexity Low_complexity 1 22 0 509 335 156 24 chr6 142042101 142042286 -40372956 - L3 LINE CR1 -181 1396 1237 1785 147 22 35 chr6 142042286 142042599 -40372643 - AluJo SINE Alu -3 309 1 509 335 156 24 chr6 142042599 142042753 -40372489 - L3 LINE CR1 -340 1237 1012 277 300 247 0 chr6 142042970 142043140 -40372102 - L3 LINE CR1 -896 681 470 208 302 0 16 chr6 142043225 142043288 -40371954 + MIR3 SINE MIR 98 159 -49 501 207 158 12 chr6 142043705 142043869 -40371373 - MER46C DNA MER2_type -149 189 2 573 303 134 52 chr6 142044104 142044548 -40370694 - L2 LINE L2 -5 3267 2776 239 224 13 0 chr6 142044675 142044751 -40370491 + GA-rich Low_complexity Low_complexity 1 77 0 228 286 29 0 chr6 142044894 142044964 -40370278 + MIR SINE MIR 70 141 -67 298 339 18 0 chr6 142045985 142046097 -40369145 + MIR3 SINE MIR 81 194 -14 191 200 0 18 chr6 142046404 142046459 -40368783 + (CA)n Simple_repeat Simple_repeat 1 54 0 209 0 97 0 chr6 142047134 142047165 -40368077 + T-rich Low_complexity Low_complexity 1 34 0 426 260 73 45 chr6 142049836 142050013 -40365229 - MIR3 SINE MIR -25 183 2 24 0 0 0 chr6 142050397 142050421 -40364821 + AT_rich Low_complexity Low_complexity 1 24 0 336 210 12 25 chr6 142051999 142052161 -40363081 + (TA)n Simple_repeat Simple_repeat 2 161 0 372 237 0 32 chr6 142052161 142052254 -40362988 - L1MC4 LINE L1 -1339 6703 6614 343 303 0 0 chr6 142052178 142052267 -40362975 + L1MC4 LINE L1 6614 6702 -1340 * 1379 166 8 4 chr6 142052307 142052542 -40362700 - MER46A DNA MER2_type 0 236 1 999 242 123 96 chr6 142052602 142053177 -40362065 + MLT1E LTR MaLR 3 593 0 21 57 0 0 chr6 142053744 142053779 -40361463 + AT_rich Low_complexity Low_complexity 1 35 0 216 318 109 9 chr6 142053997 142054107 -40361135 - L2 LINE L2 -3 3269 3149 698 246 36 6 chr6 142054522 142054689 -40360553 + MER58A DNA MER1_type 5 176 -48 572 193 233 0 chr6 142054989 142055139 -40360103 + MER20 DNA MER1_type 35 219 0 1842 163 7 7 chr6 142055249 142055555 -40359687 - AluJb SINE Alu -6 306 1 1735 201 78 21 chr6 142055756 142056193 -40359049 - MLT1C LTR MaLR -5 462 1 2235 114 0 0 chr6 142057352 142057651 -40357591 - AluSq SINE Alu -14 299 1 259 250 14 28 chr6 142057787 142057859 -40357383 + MIR SINE MIR 186 256 -6 913 250 10 0 chr6 142058847 142059055 -40356187 - MIR SINE MIR -46 216 7 203 200 0 0 chr6 142059065 142059100 -40356142 + A-rich Low_complexity Low_complexity 1 35 0 422 281 85 20 chr6 142059123 142059276 -40355966 + L1M4 LINE L1 3030 3192 -2954 198 0 0 0 chr6 142059708 142059730 -40355512 + (T)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr6 142060101 142060121 -40355121 + (GA)n Simple_repeat Simple_repeat 2 21 0 288 325 9 44 chr6 142060619 142060819 -40354423 - L3b LINE CR1 -6 1571 1353 1755 95 0 0 chr6 142061177 142061399 -40353843 - AluSx SINE Alu -84 228 7 551 265 74 6 chr6 142061877 142062039 -40353203 + MIR SINE MIR 89 261 -1 228 111 0 0 chr6 142062747 142062783 -40352459 + (TG)n Simple_repeat Simple_repeat 1 36 0 1690 215 82 38 chr6 142063780 142064362 -40350880 - L1MC5 LINE L1 -30 7931 7324 360 285 122 68 chr6 142065076 142065445 -40349797 + L2 LINE L2 2919 3307 -6 238 281 202 0 chr6 142065615 142065704 -40349538 - MIR3 SINE MIR -12 196 90 269 324 111 9 chr6 142066251 142066359 -40348883 + MIR SINE MIR 16 134 -74 301 213 16 0 chr6 142066599 142066660 -40348582 - MER113 DNA MER1_type? -4 517 456 392 377 38 21 chr6 142066858 142067097 -40348145 - L3 LINE CR1 -71 1506 1264 213 118 20 78 chr6 142067552 142067603 -40347639 + T-rich Low_complexity Low_complexity 4 51 0 30893 65 10 4 chr6 142067604 142072558 -40342684 - L1PA6 LINE L1 0 6154 1178 788 57 0 0 chr6 142072568 142072673 -40342569 - L1P LINE L1 -3719 2427 2323 * 2313 184 31 11 chr6 142072672 142073123 -40342119 - L1PA6 LINE L1 -5686 460 1 21 0 0 0 chr6 142073207 142073228 -40342014 + AT_rich Low_complexity Low_complexity 1 21 0 1025 99 7 0 chr6 142073683 142073824 -40341418 - AluSg/x SINE Alu -11 301 160 1037 294 68 11 chr6 142074258 142074625 -40340617 - LTR16B LTR ERVL -74 390 3 393 323 0 8 chr6 142074630 142074753 -40340489 + L2 LINE L2 2831 2952 -361 329 271 0 0 chr6 142074753 142074823 -40340419 - MER91A DNA MER1_type 0 196 127 * 783 291 62 53 chr6 142074815 142075189 -40340053 + L2 LINE L2 2913 3289 -24 3061 138 10 2 chr6 142075193 142075677 -40339565 + HSMAR2 DNA Mariner 2 489 -813 4740 116 20 3 chr6 142075681 142076378 -40338864 + HSMAR2 DNA Mariner 592 1300 -2 211 333 60 33 chr6 142077082 142077232 -40338010 + L2 LINE L2 2597 2750 -564 2747 248 74 42 chr6 142077239 142078843 -40336399 + L1ME3 LINE L1 4140 5816 -346 1095 205 151 24 chr6 142078843 142079175 -40336067 + MLT1A2 LTR MaLR 1 374 0 2747 248 74 42 chr6 142079175 142079504 -40335738 + L1ME3 LINE L1 5816 6133 -29 594 157 0 0 chr6 142079613 142079702 -40335540 - AluSg/x SINE Alu -22 290 202 311 252 33 46 chr6 142079938 142080089 -40335153 + L1M4 LINE L1 5199 5347 -799 24 0 0 0 chr6 142081570 142081594 -40333648 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr6 142083016 142083039 -40332203 + AT_rich Low_complexity Low_complexity 1 23 0 741 242 118 151 chr6 142084961 142085755 -40329487 + L1MEd LINE L1 1 768 -5351 359 288 16 0 chr6 142086510 142086635 -40328607 - MIR SINE MIR -64 198 72 227 389 159 8 chr6 142086769 142087021 -40328221 - L2 LINE L2 -424 2890 2601 282 73 0 0 chr6 142087099 142087140 -40328102 + (TG)n Simple_repeat Simple_repeat 1 41 0 1294 171 6 3 chr6 142087365 142087830 -40327412 - LTR69 LTR ERVL -1 587 1 246 109 0 91 chr6 142087830 142087885 -40327357 - MLT1F LTR MaLR -3 539 490 428 306 44 0 chr6 142088082 142088242 -40327000 - MLT1-int LTR MaLR -769 602 436 698 320 48 17 chr6 142088594 142089066 -40326176 - LTR33 LTR ERVL -8 513 1 809 221 33 6 chr6 142089096 142089277 -40325965 + MER5A DNA MER1_type 1 186 -3 2295 110 0 0 chr6 142090078 142090388 -40324854 + AluSx SINE Alu 3 312 0 2994 29 0 0 chr6 142090633 142090982 -40324260 - L1PA5 LINE L1 -6 6148 5800 278 296 106 38 chr6 142091126 142091258 -40323984 + MIR SINE MIR 118 258 -4 576 303 55 12 chr6 142091262 142091427 -40323815 + MIR SINE MIR 6 177 -85 265 230 58 0 chr6 142091493 142091580 -40323662 - L1ME LINE L1 -364 5757 5666 278 222 81 30 chr6 142091671 142091770 -40323472 - L1ME LINE L1 -2265 5543 5440 8656 188 31 26 chr6 142093144 142093837 -40321405 + L1MC3 LINE L1 5869 6557 -1228 2208 108 3 7 chr6 142093837 142094142 -40321100 - AluSq SINE Alu -9 304 1 8656 188 31 26 chr6 142094142 142095346 -40319896 + L1MC3 LINE L1 6557 7775 -10 383 0 21 0 chr6 142095535 142095582 -40319660 + (TG)n Simple_repeat Simple_repeat 2 49 0 1832 159 0 38 chr6 142095709 142096024 -40319218 - AluJb SINE Alu -9 303 1 304 286 109 65 chr6 142096255 142096594 -40318648 - L1ME LINE L1 -1088 5058 4705 2137 148 0 0 chr6 142096782 142097086 -40318156 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 142097511 142097535 -40317707 + AT_rich Low_complexity Low_complexity 1 24 0 228 185 0 0 chr6 142098747 142098801 -40316441 + (TG)n Simple_repeat Simple_repeat 1 54 0 1373 213 105 47 chr6 142099766 142100128 -40315114 + MSTD LTR MaLR 1 383 -13 22 56 0 0 chr6 142100308 142100344 -40314898 + AT_rich Low_complexity Low_complexity 1 36 0 441 54 0 0 chr6 142100651 142100707 -40314535 + (TA)n Simple_repeat Simple_repeat 2 57 0 26 0 0 0 chr6 142100785 142100811 -40314431 + AT_rich Low_complexity Low_complexity 1 26 0 229 236 42 14 chr6 142102130 142102202 -40313040 + MLT1L LTR MaLR 207 280 -335 356 297 45 143 chr6 142102882 142103309 -40311933 - L2 LINE L2 -1 3271 2887 370 307 135 19 chr6 142103347 142103562 -40311680 - L2 LINE L2 -490 2824 2585 228 306 64 23 chr6 142104608 142104781 -40310461 - L1ME3A LINE L1 0 6153 5974 1430 262 77 16 chr6 142104899 142105403 -40309839 - L1ME3A LINE L1 -233 5920 5386 2427 131 64 10 chr6 142105405 142105809 -40309433 - MSTA LTR MaLR -2 426 1 1200 287 63 20 chr6 142105813 142106448 -40308794 - L1ME3A LINE L1 -743 5386 4725 725 284 68 47 chr6 142106459 142107533 -40307709 - L1MEd LINE L1 -4579 1731 595 35 54 0 0 chr6 142108490 142108546 -40306696 + AT_rich Low_complexity Low_complexity 1 56 0 842 126 0 8 chr6 142108546 142108665 -40306577 - AluJb SINE Alu -194 118 1 369 285 43 82 chr6 142110126 142110179 -40305063 - L1M4 LINE L1 -988 5158 5104 2380 80 0 0 chr6 142110179 142110478 -40304764 - AluY SINE Alu -12 299 1 369 285 43 82 chr6 142110478 142110680 -40304562 - L1M4 LINE L1 -1042 5104 4913 308 297 73 58 chr6 142110696 142111312 -40303930 - L1M4 LINE L1 -1321 4825 4201 240 294 25 4 chr6 142111554 142111667 -40303575 + MLT1J2 LTR MaLR 366 549 0 289 303 41 57 chr6 142111838 142112217 -40303025 - HERVL LTR ERVL -4143 853 487 386 278 75 46 chr6 142112294 142112467 -40302775 - MIR SINE MIR -57 205 28 533 167 155 95 chr6 142112893 142113061 -40302181 + MER5A DNA MER1_type 10 187 -2 1160 180 9 17 chr6 142113920 142114153 -40301089 - MLT2C2 LTR ERVL -232 232 2 302 337 157 18 chr6 142114320 142114793 -40300449 + L3 LINE CR1 984 1575 -2 310 230 69 0 chr6 142114950 142115037 -40300205 + L1ME4a LINE L1 6015 6107 -14 395 234 19 47 chr6 142116424 142116531 -40298711 + MIR SINE MIR 145 248 -14 206 156 0 67 chr6 142116498 142116543 -40298699 + L2 LINE L2 3261 3302 -11 * 1836 148 50 0 chr6 142117282 142117560 -40297682 + AluJb SINE Alu 9 300 -12 1541 142 9 4 chr6 142117725 142117951 -40297291 - AluJb SINE Alu -80 232 6 2305 88 3 25 chr6 142118185 142118505 -40296737 - AluSp SINE Alu 0 313 1 372 231 0 0 chr6 142118608 142118673 -40296569 - AluS SINE Alu -238 65 1 1933 86 58 80 chr6 142119302 142119420 -40295822 + AluSx SINE Alu 1 120 -192 2245 93 0 3 chr6 142119420 142119721 -40295521 + AluSp SINE Alu 1 300 -13 1933 86 58 80 chr6 142119721 142119915 -40295327 + AluSx SINE Alu 120 306 -6 1837 64 12 0 chr6 142121094 142121345 -40293897 - L1P LINE L1 -1477 4669 4416 894 140 6 3 chr6 142121369 142121707 -40293535 + (CATTC)n Satellite Satellite 1 339 0 1245 97 0 0 chr6 142121737 142122089 -40293153 + (CATTC)n Satellite Satellite 1 352 0 1200 91 0 0 chr6 142122132 142122486 -40292756 + (CATTC)n Satellite Satellite 1 354 0 843 135 0 0 chr6 142122513 142122683 -40292559 + (CATTC)n Satellite Satellite 3 172 0 984 118 0 0 chr6 142122707 142122919 -40292323 + (CATTC)n Satellite Satellite 1 212 0 1017 146 3 3 chr6 142122941 142123564 -40291678 + (CATTC)n Satellite Satellite 1 623 0 1161 96 0 0 chr6 142123583 142123761 -40291481 + (CATTC)n Satellite Satellite 2 179 0 768 169 0 0 chr6 142123789 142123967 -40291275 + (CATTC)n Satellite Satellite 3 180 0 1167 72 0 0 chr6 142123988 142124155 -40291087 + (CATTC)n Satellite Satellite 2 168 0 1111 133 5 2 chr6 142124168 142124835 -40290407 + (CATTC)n Satellite Satellite 1 669 0 885 140 0 0 chr6 142124861 142125039 -40290203 + (CATTC)n Satellite Satellite 3 180 0 233 146 21 0 chr6 142125050 142125098 -40290144 + (CATTC)n Satellite Satellite 2 50 0 1155 116 6 2 chr6 142125202 142125523 -40289719 + (GAATG)n Satellite Satellite 1 503 0 986 117 6 0 chr6 142125534 142125713 -40289529 + (GAATG)n Satellite Satellite 1 180 0 1092 96 0 0 chr6 142125744 142125921 -40289321 + (GAATG)n Satellite Satellite 2 178 0 294 106 0 0 chr6 142125932 142125979 -40289263 + (GAATG)n Satellite Satellite 4 50 0 919 185 12 1 chr6 142125981 142126756 -40288486 - ALR/Alpha Satellite centromeric 0 782 1 1048 183 10 3 chr6 142126768 142127482 -40287760 - ALR/Alpha Satellite centromeric -1 4507 3799 180 0 0 0 chr6 142127482 142127502 -40287740 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1048 183 10 3 chr6 142127502 142131245 -40283997 - ALR/Alpha Satellite centromeric -709 3799 1 345 75 0 0 chr6 142131267 142131320 -40283922 + (T)n Simple_repeat Simple_repeat 1 53 0 1122 169 16 13 chr6 142131329 142132547 -40282695 - ALR/Alpha Satellite centromeric 0 2339 816 2185 98 14 3 chr6 142132547 142132842 -40282400 - AluY SINE Alu -13 298 1 1122 169 16 13 chr6 142132842 142133661 -40281581 - ALR/Alpha Satellite centromeric -1523 816 1 604 27 0 0 chr6 142133668 142133786 -40281456 + L1PA5 LINE L1 6079 6196 0 8967 146 24 14 chr6 142133786 142135214 -40280028 - L1M1 LINE L1 -6104 1461 20 483 314 15 0 chr6 142135938 142136075 -40279167 - MIR SINE MIR -14 248 110 431 296 77 41 chr6 142137051 142137494 -40277748 - L1ME4a LINE L1 -26 6095 5637 334 311 53 23 chr6 142137926 142138058 -40277184 - MIR SINE MIR -8 254 119 303 376 0 9 chr6 142138484 142138593 -40276649 - MIR SINE MIR -77 131 24 188 35 35 0 chr6 142138695 142138724 -40276518 + (CA)n Simple_repeat Simple_repeat 2 31 0 305 321 114 15 chr6 142138853 142138984 -40276258 + L2 LINE L2 3129 3272 0 225 0 0 0 chr6 142139114 142139139 -40276103 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 316 245 143 0 chr6 142140020 142140118 -40275124 + MIR SINE MIR 122 233 -29 360 0 0 0 chr6 142141076 142141116 -40274126 + (TG)n Simple_repeat Simple_repeat 1 40 0 846 172 0 6 chr6 142141421 142141578 -40273664 + L1MA9 LINE L1 6119 6274 -38 741 232 16 0 chr6 142142843 142143033 -40272209 + L1MD3 LINE L1 7784 7976 -19 300 200 29 0 chr6 142143105 142143175 -40272067 + MER116 DNA Mariner 9 80 0 1602 152 6 82 chr6 142143335 142143663 -40271579 - AluSx SINE Alu -9 303 1 294 339 52 0 chr6 142143777 142143892 -40271350 + L2 LINE L2 2950 3070 -243 208 0 0 0 chr6 142143932 142143955 -40271287 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 777 169 0 0 chr6 142143955 142144080 -40271162 - AluJb SINE Alu -1 305 159 2137 118 0 9 chr6 142144135 142144450 -40270792 - AluSx SINE Alu 0 312 1 637 218 15 76 chr6 142144450 142144647 -40270595 + L2 LINE L2 3129 3313 0 650 290 68 9 chr6 142145365 142145586 -40269656 - MIR SINE MIR -27 235 2 22 35 0 0 chr6 142147533 142147562 -40267680 + AT_rich Low_complexity Low_complexity 1 29 0 860 238 55 0 chr6 142147659 142147894 -40267348 + L1MC4a LINE L1 5628 5875 -1933 1771 157 0 31 chr6 142147927 142148221 -40267021 + AluJb SINE Alu 24 308 -4 345 93 0 0 chr6 142148338 142148392 -40266850 + (GAATG)n Satellite Satellite 2 55 0 1242 98 0 14 chr6 142148415 142148772 -40266470 + (GAATG)n Satellite Satellite 1 353 0 1242 118 2 0 chr6 142148582 142149229 -40266013 + (GAATG)n Satellite Satellite 1 648 0 1173 82 0 0 chr6 142149247 142149595 -40265647 + (GAATG)n Satellite Satellite 1 348 0 890 131 0 27 chr6 142149612 142149795 -40265447 + (GAATG)n Satellite Satellite 2 179 0 884 130 0 27 chr6 142149826 142150011 -40265231 + (GAATG)n Satellite Satellite 1 180 0 330 107 0 0 chr6 142150024 142150080 -40265162 + (GAATG)n Satellite Satellite 2 57 0 929 123 6 0 chr6 142150101 142150280 -40264962 + (GAATG)n Satellite Satellite 1 180 0 1050 135 0 0 chr6 142150307 142150758 -40264484 + (GAATG)n Satellite Satellite 1 451 0 1173 102 4 25 chr6 142150779 142151190 -40264052 + (GAATG)n Satellite Satellite 1 575 0 1173 90 0 0 chr6 142151190 142151367 -40263875 + (GAATG)n Satellite Satellite 4 180 0 345 280 104 45 chr6 142152657 142152925 -40262317 - L1ME LINE L1 -323 5798 5515 793 247 95 21 chr6 142152960 142153203 -40262039 - MIR SINE MIR 0 262 2 312 256 94 28 chr6 142153204 142153384 -40261858 - L1ME LINE L1 -2325 5483 5292 329 108 31 0 chr6 142153636 142153701 -40261541 - MLT1G LTR MaLR 0 590 524 1510 161 124 0 chr6 142153705 142154003 -40261239 + MER7A DNA MER2_type 2 334 -12 21 57 0 0 chr6 142154884 142154919 -40260323 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr6 142155518 142155542 -40259700 + (TTA)n Simple_repeat Simple_repeat 3 26 0 2124 144 0 0 chr6 142156080 142156392 -40258850 - AluSq SINE Alu -1 312 1 21 0 0 0 chr6 142156487 142156508 -40258734 + AT_rich Low_complexity Low_complexity 1 21 0 2019 154 0 0 chr6 142157229 142157527 -40257715 - AluSx SINE Alu -12 300 3 216 0 0 0 chr6 142158330 142158354 -40256888 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 548 139 0 0 chr6 142158445 142158524 -40256718 + AluJ/FLAM SINE Alu 5 83 -229 314 243 32 122 chr6 142159254 142159443 -40255799 - MIR SINE MIR -1 261 90 1644 211 17 14 chr6 142159620 142159956 -40255286 + MLT1A1 LTR MaLR 4 343 -22 433 73 0 167 chr6 142159956 142159995 -40255247 + MADE1 DNA Mariner 1 16 -64 1997 119 0 56 chr6 142159995 142160298 -40254944 - AluSx SINE Alu -26 286 1 433 73 0 167 chr6 142160298 142160354 -40254888 + MADE1 DNA Mariner 16 80 0 1644 211 17 14 chr6 142160354 142160378 -40254864 + MLT1A1 LTR MaLR 343 365 0 412 208 223 23 chr6 142160504 142160634 -40254608 - MIR SINE MIR -3 259 104 820 224 78 0 chr6 142160671 142160850 -40254392 - MIR SINE MIR -26 236 44 1458 284 85 33 chr6 142161315 142161655 -40253587 - L2 LINE L2 -243 3070 2749 219 36 0 0 chr6 142161655 142161683 -40253559 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 1907 110 0 47 chr6 142161685 142161984 -40253258 - AluSx SINE Alu -27 285 1 1458 284 85 33 chr6 142161984 142162288 -40252954 - L2 LINE L2 -564 2749 2397 2165 83 11 7 chr6 142162681 142162959 -40252283 + AluSc SINE Alu 22 300 -9 23 54 0 0 chr6 142163398 142163435 -40251807 + AT_rich Low_complexity Low_complexity 1 37 0 1392 156 63 0 chr6 142163525 142163794 -40251448 + MER2 DNA MER2_type 3 288 -57 216 86 0 0 chr6 142163796 142163831 -40251411 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2774 87 62 0 chr6 142163843 142164247 -40250995 - L1PA14 LINE L1 -2 6159 5731 420 190 0 13 chr6 142164247 142164317 -40250925 + MER2 DNA MER2_type 275 345 0 209 265 0 0 chr6 142164602 142164651 -40250591 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 195 188 0 0 chr6 142164739 142164787 -40250455 + (TA)n Simple_repeat Simple_repeat 1 48 0 209 136 0 23 chr6 142164821 142164865 -40250377 + (TA)n Simple_repeat Simple_repeat 1 43 0 2629 226 46 18 chr6 142164865 142165493 -40249749 + MER82 DNA MER2_type 2 647 -6 22 0 0 0 chr6 142165638 142165660 -40249582 + AT_rich Low_complexity Low_complexity 1 22 0 1159 204 35 84 chr6 142166500 142166738 -40248504 - MER58B DNA MER1_type -2094 326 108 1725 177 7 11 chr6 142166738 142167047 -40248195 + AluJb SINE Alu 1 308 0 1159 204 35 84 chr6 142167047 142167150 -40248092 - MER58B DNA MER1_type -2312 108 1 1920 136 61 3 chr6 142167843 142168138 -40247104 - AluSx SINE Alu 0 312 1 243 250 33 17 chr6 142168141 142168201 -40247041 + MER5A DNA MER1_type 128 188 -1 223 333 41 41 chr6 142168529 142168652 -40246590 - MER5A DNA MER1_type -14 175 53 346 279 51 44 chr6 142168777 142168935 -40246307 - MER103 DNA DNA 0 166 8 2174 111 6 49 chr6 142169643 142169968 -40245274 - AluSx SINE Alu -1 311 1 246 105 0 0 chr6 142170779 142170817 -40244425 + (CA)n Simple_repeat Simple_repeat 2 39 0 3100 133 82 8 chr6 142171054 142171544 -40243698 + MER1A DNA MER1_type 2 527 0 2432 64 10 0 chr6 142171842 142172138 -40243104 + AluY SINE Alu 1 299 -12 369 281 122 22 chr6 142172257 142172396 -40242846 - MER91A DNA MER1_type -43 153 1 2349 91 0 7 chr6 142172977 142173274 -40241968 - AluSg SINE Alu -15 295 1 236 304 78 20 chr6 142173376 142173478 -40241764 - MIR3 SINE MIR -50 158 51 1575 123 32 56 chr6 142174036 142174321 -40240921 - AluSx SINE Alu 0 312 35 399 207 166 53 chr6 142174496 142174665 -40240577 + L2 LINE L2 3126 3313 0 642 125 19 10 chr6 142175621 142175725 -40239517 + AluSg/x SINE Alu 190 294 -16 419 82 38 65 chr6 142175797 142176246 -40238996 + (TA)n Simple_repeat Simple_repeat 1 436 0 2421 106 0 0 chr6 142177288 142177600 -40237642 - AluSx SINE Alu 0 312 1 825 251 55 50 chr6 142177924 142178031 -40237211 + HAL1 LINE L1 143 248 -2259 2043 115 7 0 chr6 142178031 142178310 -40236932 + AluSg SINE Alu 1 281 -29 825 251 55 50 chr6 142178310 142178564 -40236678 + HAL1 LINE L1 248 506 -2001 259 387 35 42 chr6 142178672 142178814 -40236428 - L2 LINE L2 -25 3247 3107 482 163 0 0 chr6 142179144 142179224 -40236018 - MADE1 DNA Mariner 0 80 1 283 357 50 14 chr6 142179512 142179652 -40235590 - L2 LINE L2 -211 3061 2917 2355 88 0 3 chr6 142180235 142180540 -40234702 + AluY SINE Alu 1 304 -7 26 30 0 0 chr6 142180557 142180590 -40234652 + AT_rich Low_complexity Low_complexity 1 33 0 255 291 0 19 chr6 142180708 142180811 -40234431 - L1MC4 LINE L1 -1327 6715 6615 244 281 22 0 chr6 142180735 142180824 -40234418 + L1MC4 LINE L1 6613 6703 -1339 * 539 215 23 6 chr6 142180833 142181010 -40234232 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 337 303 0 0 chr6 142181044 142181133 -40234109 - L1MC4 LINE L1 -1339 6703 6615 * 349 250 0 22 chr6 142181080 142181172 -40234070 + L1MC4 LINE L1 6614 6703 -1339 1972 114 0 0 chr6 142181177 142181431 -40233811 - AluSx SINE Alu -58 254 1 400 274 71 74 chr6 142181625 142181935 -40233307 - L2 LINE L2 0 3313 3005 1777 100 15 0 chr6 142182718 142182987 -40232255 + L1PA13 LINE L1 5888 6160 -3 1117 277 91 11 chr6 142183477 142183946 -40231296 - L2 LINE L2 -13 3300 2794 2200 113 7 0 chr6 142184330 142184623 -40230619 + AluSx SINE Alu 1 295 -17 259 256 106 25 chr6 142185089 142185249 -40229993 - MIR SINE MIR -10 252 80 4487 126 20 9 chr6 142185936 142186618 -40228624 + LTR8 LTR ERV1 2 691 0 407 209 0 170 chr6 142187168 142187321 -40227921 - L2 LINE L2 0 3313 3187 1831 271 65 49 chr6 142187487 142187581 -40227661 + L2 LINE L2 2284 2375 -938 1809 144 0 85 chr6 142187581 142187922 -40227320 - AluJo SINE Alu 0 312 1 1831 271 65 49 chr6 142187922 142188840 -40226402 + L2 LINE L2 2375 3313 0 384 281 37 7 chr6 142188851 142188986 -40226256 + MIR3 SINE MIR 3 141 -67 21 0 0 0 chr6 142189139 142189160 -40226082 + AT_rich Low_complexity Low_complexity 1 21 0 2054 124 0 3 chr6 142189677 142189968 -40225274 + AluSx SINE Alu 1 290 -22 238 216 0 0 chr6 142190133 142190184 -40225058 - L2 LINE L2 0 3272 3222 228 35 0 0 chr6 142190204 142190233 -40225009 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 258 250 150 10 chr6 142190243 142190343 -40224899 + L3 LINE CR1 351 464 -1113 2167 117 42 99 chr6 142190492 142190722 -40224520 - MSTA LTR MaLR 0 428 235 2116 118 9 22 chr6 142190722 142191037 -40224205 - AluSp SINE Alu 0 313 3 2167 117 42 99 chr6 142191037 142191260 -40223982 - MSTA LTR MaLR -193 235 1 180 294 59 12 chr6 142191283 142191368 -40223874 + L3 LINE CR1 1020 1108 -469 821 154 9 0 chr6 142191512 142191732 -40223510 + (GAATG)n Satellite Satellite 1 222 0 1091 93 3 0 chr6 142191743 142192086 -40223156 + (GAATG)n Satellite Satellite 1 344 0 1029 133 0 0 chr6 142192102 142192499 -40222743 + (GAATG)n Satellite Satellite 1 397 0 546 187 0 0 chr6 142192511 142192666 -40222576 + (GAATG)n Satellite Satellite 2 156 0 970 112 11 0 chr6 142192682 142192860 -40222382 + (GAATG)n Satellite Satellite 1 180 0 1097 127 2 0 chr6 142192875 142193323 -40221919 + (GAATG)n Satellite Satellite 1 449 0 870 110 0 0 chr6 142193342 142193488 -40221754 + (GAATG)n Satellite Satellite 2 147 0 984 133 0 0 chr6 142193504 142193684 -40221558 + (GAATG)n Satellite Satellite 1 180 0 273 118 0 0 chr6 142193712 142193763 -40221479 + (GAATG)n Satellite Satellite 2 52 0 793 149 10 3 chr6 142193774 142194145 -40221097 + (GAATG)n Satellite Satellite 1 373 0 486 137 0 0 chr6 142194169 142194264 -40220978 + (GAATG)n Satellite Satellite 3 97 0 708 163 32 8 chr6 142194298 142194421 -40220821 - FLAM_A SINE Alu -7 126 1 1964 199 20 75 chr6 142194455 142194948 -40220294 + MLT1C LTR MaLR 2 467 0 2959 88 11 11 chr6 142195148 142195523 -40219719 + THE1C LTR MaLR 1 375 0 2393 296 48 24 chr6 142195576 142197159 -40218083 - HERV16 LTR ERVL -2578 2418 732 21 0 0 0 chr6 142197169 142197190 -40218052 + AT_rich Low_complexity Low_complexity 1 21 0 366 340 26 19 chr6 142197885 142198041 -40217201 + MIR SINE MIR 7 163 -99 1212 85 0 0 chr6 142198340 142198663 -40216579 + (CATTC)n Satellite Satellite 1 323 0 1085 124 6 0 chr6 142198685 142199041 -40216201 + (CATTC)n Satellite Satellite 1 357 0 1005 123 6 3 chr6 142199073 142199442 -40215800 + (CATTC)n Satellite Satellite 1 370 0 1029 158 0 2 chr6 142199453 142199907 -40215335 + (CATTC)n Satellite Satellite 1 453 0 1179 94 0 0 chr6 142199922 142200102 -40215140 + (CATTC)n Satellite Satellite 1 180 0 1026 122 0 0 chr6 142200137 142200317 -40214925 + (CATTC)n Satellite Satellite 1 180 0 737 145 0 21 chr6 142200338 142200579 -40214663 + (CATTC)n Satellite Satellite 1 235 0 1388 108 0 4 chr6 142200603 142201127 -40214115 + (CATTC)n Satellite Satellite 1 521 0 1050 107 0 0 chr6 142201160 142201337 -40213905 + (CATTC)n Satellite Satellite 4 180 0 1254 112 5 2 chr6 142201363 142201771 -40213471 + (CATTC)n Satellite Satellite 1 409 0 210 37 0 0 chr6 142201917 142201944 -40213298 + (GAATG)n Satellite Satellite 2 28 0 743 164 6 0 chr6 142201957 142202128 -40213114 + (GAATG)n Satellite Satellite 2 173 0 951 135 0 6 chr6 142202146 142202487 -40212755 + (GAATG)n Satellite Satellite 3 516 0 1074 107 0 0 chr6 142202515 142202692 -40212550 + (GAATG)n Satellite Satellite 2 178 0 1137 105 0 13 chr6 142202713 142203077 -40212165 + (GAATG)n Satellite Satellite 2 536 0 1167 141 0 3 chr6 142203098 142203601 -40211641 + (GAATG)n Satellite Satellite 2 680 0 1035 136 2 2 chr6 142203622 142204170 -40211072 + (GAATG)n Satellite Satellite 1 548 0 906 126 0 0 chr6 142204182 142204406 -40210836 + (GAATG)n Satellite Satellite 1 224 0 1272 93 2 5 chr6 142204427 142205494 -40209748 + (GAATG)n Satellite Satellite 1 1063 0 723 167 0 0 chr6 142205513 142205675 -40209567 + (GAATG)n Satellite Satellite 1 162 0 8395 125 34 38 chr6 142205777 142205902 -40209340 + MER57B-int LTR ERV1 4794 4918 -2619 2137 98 11 3 chr6 142205902 142206189 -40209053 - AluY SINE Alu -18 293 5 8395 125 34 38 chr6 142206189 142206502 -40208740 + MER57B-int LTR ERV1 4918 5231 -2306 2025 124 7 34 chr6 142206502 142206800 -40208442 + AluSx SINE Alu 1 290 -22 8395 125 34 38 chr6 142206800 142207761 -40207481 + MER57B-int LTR ERV1 5231 6188 -1349 2393 159 33 5 chr6 142207753 142208149 -40207093 + MER57B-int LTR ERV1 6661 7067 -470 * 679 164 9 0 chr6 142209133 142209243 -40205999 + MER57B-int LTR ERV1 7032 7142 -395 2191 117 0 0 chr6 142209244 142209535 -40205707 - AluY SINE Alu -20 291 1 761 115 23 31 chr6 142209550 142209680 -40205562 + LTR54B LTR ERV1 3 131 -367 1402 135 131 0 chr6 142209680 142209909 -40205333 + MER57B-int LTR ERV1 7279 7537 0 2402 140 93 5 chr6 142209909 142210308 -40204934 + MER57B LTR ERV1 1 434 0 231 150 75 0 chr6 142210349 142210389 -40204853 + LTR6A LTR ERV1 1 43 -521 3999 119 7 11 chr6 142210389 142210952 -40204290 + LTR6A LTR ERV1 4 564 0 351 251 37 63 chr6 142212574 142212822 -40202420 + MLT1H LTR MaLR 311 549 0 2400 81 0 0 chr6 142214370 142214665 -40200577 - AluSg SINE Alu -15 295 1 962 224 37 58 chr6 142215245 142215624 -40199618 + MER66A LTR ERV1 68 438 -40 181 245 38 38 chr6 142215954 142216007 -40199235 + MIR SINE MIR 100 152 -56 817 283 11 0 chr6 142216206 142216471 -40198771 - L1M4 LINE L1 -1746 4400 4133 2324 76 0 23 chr6 142216584 142216886 -40198356 + AluY SINE Alu 1 295 -16 4459 183 57 25 chr6 142216887 142217312 -40197930 + L1 LINE L1 2968 3378 -2768 2032 128 14 0 chr6 142217312 142217601 -40197641 + AluSx SINE Alu 1 293 -19 4459 183 57 25 chr6 142217601 142218689 -40196553 + L1 LINE L1 3378 4664 -1482 195 42 0 0 chr6 142218689 142218713 -40196529 + (GAATG)n Satellite Satellite 2 25 0 1131 93 0 15 chr6 142218734 142219002 -40196240 + (GAATG)n Satellite Satellite 1 263 0 798 142 0 12 chr6 142219015 142219265 -40195977 + (GAATG)n Satellite Satellite 1 246 0 1077 110 3 3 chr6 142219281 142219616 -40195626 + (GAATG)n Satellite Satellite 1 335 0 597 184 0 0 chr6 142219641 142219799 -40195443 + (GAATG)n Satellite Satellite 2 159 0 1032 123 3 14 chr6 142219820 142220194 -40195048 + (GAATG)n Satellite Satellite 1 369 0 1120 78 6 6 chr6 142220219 142220398 -40194844 + (GAATG)n Satellite Satellite 2 180 0 870 157 0 0 chr6 142220421 142220599 -40194643 + (GAATG)n Satellite Satellite 1 178 0 432 43 45 0 chr6 142220614 142220736 -40194506 + (GAATG)n Satellite Satellite 1 127 0 441 230 126 15 chr6 142220868 142221003 -40194239 + L1MC4 LINE L1 6464 6613 -1429 1946 170 18 9 chr6 142221012 142221342 -40193900 - MER49 LTR ERV1 0 923 591 270 128 0 0 chr6 142221339 142221378 -40193864 + 5S rRNA rRNA 1 39 -82 * 3479 132 30 59 chr6 142221376 142221694 -40193548 - MER49 LTR ERV1 -311 612 318 2090 107 0 4 chr6 142221694 142222017 -40193225 + AluSg SINE Alu 1 322 0 3479 132 30 59 chr6 142222017 142222327 -40192915 - MER49 LTR ERV1 -605 318 1 3315 253 110 22 chr6 142222363 142223567 -40191675 + L1MC4 LINE L1 6692 8001 -41 832 144 8 8 chr6 142223567 142223692 -40191550 - AluSq/x SINE Alu -188 125 1 1197 108 0 0 chr6 142224000 142224157 -40191085 + AluSc SINE Alu 131 287 -22 1053 189 50 40 chr6 142225072 142225153 -40190089 + MER58A DNA MER1_type 1 80 -2340 1945 112 60 91 chr6 142225153 142225538 -40189704 + THE1C LTR MaLR 1 373 -2 1053 189 50 40 chr6 142225538 142225678 -40189564 + MER58A DNA MER1_type 80 224 0 473 297 188 17 chr6 142225680 142225973 -40189269 - L1MC4a LINE L1 -1888 5920 5578 252 0 0 0 chr6 142227354 142227382 -40187860 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 270 0 0 0 chr6 142227381 142227411 -40187831 + (GA)n Simple_repeat Simple_repeat 1 30 0 631 229 176 0 chr6 142227492 142227645 -40187597 - MER5A DNA MER1_type 0 189 10 235 206 118 0 chr6 142227706 142227774 -40187468 + MIR SINE MIR 86 161 -101 693 228 16 0 chr6 142229192 142229315 -40185927 + FLAM_A SINE Alu 1 125 -8 2021 143 0 10 chr6 142230329 142230629 -40184613 + AluSx SINE Alu 1 297 -15 244 258 50 50 chr6 142232611 142232770 -40182472 - L1M3de LINE L1 -4729 1924 1766 11401 40 1 1 chr6 142232779 142234862 -40180380 - L1PA5 LINE L1 -3 6151 4068 38989 44 20 82 chr6 142234878 142241451 -40173791 - L1PA3 LINE L1 0 6155 1 32703 58 2 5 chr6 142241439 142245538 -40169704 - L1PA5 LINE L1 -2053 4093 7 * 750 289 62 3 chr6 142245578 142245882 -40169360 - L1M4 LINE L1 -1874 4272 3951 825 53 0 0 chr6 142245906 142246020 -40169222 - L1PA4 LINE L1 -182 5973 5860 * 1138 236 82 36 chr6 142245996 142246020 -40169222 - L1M4 LINE L1 -2177 3969 3948 1306 54 0 6 chr6 142246020 142246185 -40169057 + L1PA4 LINE L1 5986 6150 -5 1138 236 82 36 chr6 142246185 142246452 -40168790 - L1M4 LINE L1 -2198 3948 3647 2058 197 58 54 chr6 142246452 142246488 -40168754 - MLT2B1 LTR ERVL 0 520 486 270 0 0 0 chr6 142246488 142246518 -40168724 + (TG)n Simple_repeat Simple_repeat 2 31 0 2058 197 58 54 chr6 142246518 142246999 -40168243 - MLT2B1 LTR ERVL -34 486 1 1138 236 82 36 chr6 142246999 142247156 -40168086 - L1M4 LINE L1 -2499 3647 3499 1149 233 49 3 chr6 142247156 142247443 -40167799 - MLT2F LTR ERVL -2 661 362 1840 260 32 17 chr6 142247548 142248317 -40166925 - L1M4 LINE L1 -2770 3376 2596 211 200 77 46 chr6 142249200 142249265 -40165977 + L2 LINE L2 3195 3261 -11 1673 219 175 6 chr6 142249310 142249795 -40165447 - MLT1F1 LTR MaLR 0 567 1 2454 121 3 0 chr6 142249848 142250213 -40165029 + THE1C LTR MaLR 8 373 -2 1628 190 14 3 chr6 142250781 142251076 -40164166 + AluJo SINE Alu 1 298 -14 423 243 9 9 chr6 142251084 142251195 -40164047 + AluJb SINE Alu 200 310 -2 25 0 0 0 chr6 142251578 142251603 -40163639 + AT_rich Low_complexity Low_complexity 1 25 0 459 266 95 23 chr6 142252194 142252457 -40162785 + L1ME4a LINE L1 5615 5896 -225 217 254 18 0 chr6 142252461 142252516 -40162726 + (CATA)n Simple_repeat Simple_repeat 4 59 0 2310 242 126 50 chr6 142252566 142253719 -40161523 + L1M3e LINE L1 464 1703 -5786 2444 249 66 24 chr6 142253722 142255533 -40159709 + L1M3e LINE L1 2012 3820 -3745 22409 46 6 0 chr6 142255657 142258998 -40156244 - L1P2 LINE L1 -362 5793 2434 258 32 0 0 chr6 142259142 142259173 -40156069 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 852 132 0 0 chr6 142259190 142259342 -40155900 + (GAATG)n Satellite Satellite 2 153 0 969 126 0 0 chr6 142259361 142259536 -40155706 + (GAATG)n Satellite Satellite 3 177 0 1278 79 0 27 chr6 142259562 142259937 -40155305 + (GAATG)n Satellite Satellite 1 540 0 1254 120 0 0 chr6 142259973 142260547 -40154695 + (GAATG)n Satellite Satellite 1 574 0 1037 101 6 0 chr6 142260558 142260737 -40154505 + (GAATG)n Satellite Satellite 1 180 0 1053 133 4 9 chr6 142260752 142261099 -40154143 + (GAATG)n Satellite Satellite 3 520 0 898 95 0 53 chr6 142261125 142261315 -40153927 + (GAATG)n Satellite Satellite 1 180 0 1289 112 2 2 chr6 142261335 142261817 -40153425 + (GAATG)n Satellite Satellite 1 662 0 1158 87 0 0 chr6 142261830 142262003 -40153239 + (GAATG)n Satellite Satellite 2 174 0 1020 135 0 0 chr6 142262019 142262463 -40152779 + (GAATG)n Satellite Satellite 1 444 0 1263 119 4 6 chr6 142262488 142262773 -40152469 + (GAATG)n Satellite Satellite 1 463 0 1026 117 0 0 chr6 142262773 142262952 -40152290 + (GAATG)n Satellite Satellite 2 180 0 1059 101 0 0 chr6 142263053 142263221 -40152021 + (GAATG)n Simple_repeat Simple_repeat 3 170 0 1158 100 0 0 chr6 142263385 142263565 -40151677 + (GAATG)n Satellite Satellite 1 180 0 945 126 0 0 chr6 142263578 142263753 -40151489 + (GAATG)n Satellite Satellite 3 177 0 896 111 0 28 chr6 142263777 142263958 -40151284 + (GAATG)n Satellite Satellite 2 177 0 1254 110 0 8 chr6 142263984 142264533 -40150709 + (GAATG)n Satellite Satellite 1 723 0 785 141 0 27 chr6 142264544 142264728 -40150514 + (GAATG)n Satellite Satellite 2 180 0 975 138 0 21 chr6 142264744 142265113 -40150129 + (GAATG)n Satellite Satellite 2 536 0 1062 125 0 0 chr6 142265132 142265602 -40149640 + (GAATG)n Satellite Satellite 1 470 0 737 145 0 21 chr6 142265626 142265867 -40149375 + (GAATG)n Satellite Satellite 1 235 0 1026 122 0 0 chr6 142265888 142266068 -40149174 + (GAATG)n Satellite Satellite 1 180 0 1179 94 0 0 chr6 142266103 142266283 -40148959 + (GAATG)n Satellite Satellite 1 180 0 1029 148 0 2 chr6 142266298 142266651 -40148591 + (GAATG)n Satellite Satellite 1 531 0 981 121 6 6 chr6 142266675 142267040 -40148202 + (GAATG)n Satellite Satellite 1 365 0 1152 133 1 1 chr6 142267065 142268272 -40146970 + (GAATG)n Satellite Satellite 1 1206 0 1104 119 3 0 chr6 142268293 142268638 -40146604 + (GAATG)n Satellite Satellite 1 346 0 291 203 0 0 chr6 142268649 142268728 -40146514 + (GAATG)n Satellite Satellite 2 80 0 903 112 0 0 chr6 142268739 142268891 -40146351 + (GAATG)n Satellite Satellite 4 155 0 204 111 0 0 chr6 142268903 142268939 -40146303 + (GAATG)n Satellite Satellite 1 36 0 696 186 0 0 chr6 142268965 142269142 -40146100 + (GAATG)n Satellite Satellite 2 178 0 1317 104 1 2 chr6 142269158 142269851 -40145391 + (GAATG)n Satellite Satellite 1 871 0 812 133 0 28 chr6 142269877 142270058 -40145184 + (GAATG)n Satellite Satellite 1 176 0 1000 99 8 4 chr6 142270080 142270331 -40144911 + (GAATG)n Satellite Satellite 1 252 0 908 125 0 27 chr6 142270366 142270550 -40144692 + (GAATG)n Satellite Satellite 2 180 0 237 128 0 0 chr6 142270561 142270608 -40144634 + (GAATG)n Satellite Satellite 4 50 0 1050 112 0 0 chr6 142270627 142270805 -40144437 + (GAATG)n Satellite Satellite 2 179 0 1100 138 0 2 chr6 142270816 142271421 -40143821 + (GAATG)n Satellite Satellite 1 603 0 1085 130 3 0 chr6 142271432 142271741 -40143501 + (GAATG)n Satellite Satellite 1 310 0 893 124 0 27 chr6 142271785 142271970 -40143272 + (GAATG)n Satellite Satellite 1 180 0 1150 122 2 8 chr6 142272011 142272682 -40142560 + (GAATG)n Satellite Satellite 2 844 0 1191 97 4 0 chr6 142272702 142273200 -40142042 + (GAATG)n Satellite Satellite 1 500 0 1036 106 6 6 chr6 142273235 142273415 -40141827 + (GAATG)n Satellite Satellite 1 180 0 818 143 6 0 chr6 142273447 142273622 -40141620 + (GAATG)n Satellite Satellite 2 177 0 251 204 0 0 chr6 142273643 142273697 -40141545 + (GAATG)n Satellite Satellite 2 55 0 870 131 0 0 chr6 142273714 142273882 -40141360 + (GAATG)n Satellite Satellite 2 169 0 887 130 0 22 chr6 142273903 142274087 -40141155 + (GAATG)n Satellite Satellite 1 180 0 180 158 0 0 chr6 142274102 142274140 -40141102 + (GAATG)n Satellite Satellite 3 40 0 831 140 0 0 chr6 142274164 142274335 -40140907 + (GAATG)n Satellite Satellite 2 172 0 189 159 0 0 chr6 142274356 142274400 -40140842 + (GAATG)n Satellite Satellite 2 45 0 197 83 28 0 chr6 142274484 142274520 -40140722 + (GAATG)n Simple_repeat Simple_repeat 4 40 0 1019 231 7 14 chr6 142274662 142274944 -40140298 + L1MA8 LINE L1 2416 2695 -3451 672 73 0 10 chr6 142274951 142275047 -40140195 + MER4A LTR ERV1 3 97 -567 1726 99 25 79 chr6 142275049 142275416 -40139826 + MER4A LTR ERV1 262 664 0 2578 229 45 11 chr6 142275420 142276266 -40138976 + L1MA8 LINE L1 2701 3575 -2571 * 2944 0 0 0 chr6 142276257 142276598 -40138644 + L1HS LINE L1 5815 6155 0 2127 125 0 23 chr6 142276626 142276930 -40138312 + AluSq SINE Alu 12 308 -5 9506 154 18 11 chr6 142276931 142278584 -40136658 + L1MA8 LINE L1 3572 5249 -1042 1275 168 35 0 chr6 142278584 142278810 -40136432 - MER46A DNA MER2_type -1 235 2 9506 154 18 11 chr6 142278810 142279696 -40135546 + L1MA8 LINE L1 5249 6127 -164 694 265 84 14 chr6 142280067 142280282 -40134960 - MIR SINE MIR -19 243 14 2197 117 0 0 chr6 142280634 142280925 -40134317 + AluSx SINE Alu 1 291 -21 732 241 6 12 chr6 142280988 142281154 -40134088 - MER5B DNA MER1_type -7 171 7 565 271 102 0 chr6 142281199 142281376 -40133866 + MIR SINE MIR 64 258 -4 315 85 0 0 chr6 142281390 142281437 -40133805 + (ATG)n Simple_repeat Simple_repeat 1 47 0 1090 279 36 41 chr6 142282443 142282858 -40132384 - L2 LINE L2 0 3313 2901 3782 201 16 6 chr6 142283027 142283719 -40131523 - L1PA15-16 LINE L1 -5652 1197 499 1740 152 3 0 chr6 142284514 142284811 -40130431 + MER47A DNA MER2_type 1 298 -68 756 214 0 35 chr6 142284811 142284956 -40130286 + FAM SINE Alu 1 140 -45 387 235 0 0 chr6 142284981 142285062 -40130180 + MER47A DNA MER2_type 285 365 -1 41 48 0 0 chr6 142285229 142285291 -40129951 + AT_rich Low_complexity Low_complexity 1 62 0 226 261 11 76 chr6 142285364 142285441 -40129801 + L1ME LINE L1 491 563 -5967 2410 120 0 47 chr6 142285441 142285823 -40129419 - THE1B LTR MaLR 0 364 1 226 261 11 76 chr6 142285823 142285837 -40129405 + L1ME LINE L1 563 576 -5954 453 306 132 14 chr6 142286368 142286656 -40128586 + L1ME LINE L1 987 1308 -5413 785 159 82 98 chr6 142286725 142287040 -40128202 + L1ME LINE L1 2122 2431 -4109 404 264 104 9 chr6 142287196 142287416 -40127826 + L1ME LINE L1 2666 2906 -3634 23 54 0 0 chr6 142290455 142290492 -40124750 + AT_rich Low_complexity Low_complexity 1 37 0 480 182 30 0 chr6 142290493 142290592 -40124650 + L1ME LINE L1 2893 2994 -3546 339 295 19 0 chr6 142290592 142290697 -40124545 + U6 snRNA snRNA 1 107 0 2236 278 60 30 chr6 142290713 142292122 -40123120 + L1ME LINE L1 2979 4429 -2111 381 247 0 0 chr6 142292122 142292199 -40123043 - Tigger3(Golem) DNA MER2_type 0 3038 2962 1006 165 123 60 chr6 142292201 142292356 -40122886 - Tigger3(Golem) DNA MER2_type -780 2248 2104 1760 187 0 3 chr6 142292356 142292662 -40122580 + AluSx SINE Alu 1 305 0 1006 165 123 60 chr6 142292662 142292916 -40122326 - Tigger3(Golem) DNA MER2_type -924 2104 2 832 280 19 13 chr6 142292919 142293233 -40122009 + L1ME LINE L1 4419 4734 -1806 2121 175 62 0 chr6 142293396 142293819 -40121423 + Tigger1 DNA MER2_type 73 521 -1897 25 65 0 0 chr6 142295482 142295528 -40119714 + AT_rich Low_complexity Low_complexity 1 46 0 676 177 16 16 chr6 142295528 142295652 -40119590 - FLAM_C SINE Alu -9 124 1 21 36 0 0 chr6 142295834 142295862 -40119380 + AT_rich Low_complexity Low_complexity 1 28 0 280 209 0 82 chr6 142296571 142296681 -40118561 - LTR67 LTR ERVL 0 557 457 2328 96 0 3 chr6 142296863 142297176 -40118066 - AluSx SINE Alu 0 312 1 1750 175 10 3 chr6 142297955 142298252 -40116990 + AluJo SINE Alu 1 299 -13 2278 131 0 0 chr6 142299910 142300403 -40114839 - AluSx SINE Alu 0 493 1 758 311 166 30 chr6 142300916 142301617 -40113625 - L2 LINE L2 -427 2887 2092 428 318 39 14 chr6 142302185 142302388 -40112854 + MIR SINE MIR 7 213 -49 461 259 34 68 chr6 142302584 142302847 -40112395 - L1ME4a LINE L1 -27 6094 5841 1878 131 29 0 chr6 142302866 142303141 -40112101 - AluSq SINE Alu -30 283 1 1645 204 0 0 chr6 142303220 142303495 -40111747 + AluJo SINE Alu 1 275 -37 231 250 0 13 chr6 142303817 142303893 -40111349 - L1ME4a LINE L1 -2592 5403 5329 2272 96 0 3 chr6 142304780 142305081 -40110161 - AluY SINE Alu -11 300 1 186 326 87 11 chr6 142305149 142305241 -40110001 - L2 LINE L2 -247 3066 2968 2115 117 3 17 chr6 142305428 142305728 -40109514 + AluSx SINE Alu 1 296 -16 1726 183 7 3 chr6 142305824 142306114 -40109128 - AluSx SINE Alu -21 291 1 26 0 0 0 chr6 142307560 142307586 -40107656 + AT_rich Low_complexity Low_complexity 1 26 0 4661 117 18 8 chr6 142307625 142308354 -40106888 - L1PA16 LINE L1 -10 6156 5421 2041 171 32 0 chr6 142308354 142308905 -40106337 + L1PA16 LINE L1 4869 5444 -722 22 35 0 0 chr6 142308906 142308935 -40106307 + AT_rich Low_complexity Low_complexity 1 29 0 13004 129 12 15 chr6 142309036 142309873 -40105369 + Tigger1 DNA MER2_type 23 861 -1557 2012 130 3 46 chr6 142309873 142310196 -40105046 + AluSx SINE Alu 1 309 -3 13004 129 12 15 chr6 142310196 142311534 -40103708 + Tigger1 DNA MER2_type 861 2192 -226 187 305 34 34 chr6 142312031 142312149 -40103093 + L2 LINE L2 1932 2049 -1265 297 0 0 0 chr6 142312411 142312444 -40102798 + (TG)n Simple_repeat Simple_repeat 2 34 0 254 316 0 0 chr6 142312991 142313067 -40102175 + GA-rich Low_complexity Low_complexity 1 76 0 1783 142 33 7 chr6 142313389 142313697 -40101545 - AluSx SINE Alu 0 315 1 322 262 203 53 chr6 142313773 142313960 -40101282 - MIR SINE MIR -47 215 1 207 0 0 0 chr6 142314626 142314649 -40100593 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 142317068 142317089 -40098153 + AT_rich Low_complexity Low_complexity 1 21 0 1395 214 58 31 chr6 142317153 142317601 -40097641 + MLT1C LTR MaLR 1 460 -7 2635 91 6 6 chr6 142317723 142318085 -40097157 + THE1B LTR MaLR 1 362 -2 471 277 138 21 chr6 142318141 142318329 -40096913 + MIR SINE MIR 4 213 -49 1365 157 4 0 chr6 142318350 142318585 -40096657 - L1MB1 LINE L1 -1 6167 5932 466 186 49 0 chr6 142318586 142318688 -40096554 + L1MB1 LINE L1 5830 5936 -232 733 174 8 15 chr6 142318737 142318869 -40096373 - FLAM_A SINE Alu -1 132 2 728 188 16 8 chr6 142319153 142319281 -40095961 - FLAM_C SINE Alu -4 129 1 2155 100 7 17 chr6 142319428 142319729 -40095513 - AluSx SINE Alu -14 298 1 210 37 0 0 chr6 142320048 142320075 -40095167 + (CAA)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr6 142320164 142320184 -40095058 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 330 102 0 0 chr6 142320193 142320242 -40095000 - U6 snRNA snRNA -58 49 1 281 296 106 38 chr6 142321160 142321292 -40093950 - MIR SINE MIR -4 258 118 2642 57 6 0 chr6 142321436 142321802 -40093440 + L1PA4 LINE L1 5800 6167 0 1390 146 36 4 chr6 142321803 142322078 -40093164 + MER57-int LTR ERV1 4455 4738 -2799 530 258 129 12 chr6 142322647 142322935 -40092307 + MLT1G3 LTR MaLR 13 352 -243 762 299 199 7 chr6 142322944 142323184 -40092058 - L2 LINE L2 -253 3060 2867 300 53 0 0 chr6 142323184 142323222 -40092020 + (TTG)n Simple_repeat Simple_repeat 2 39 0 762 299 199 7 chr6 142323222 142323401 -40091841 - L2 LINE L2 -446 2867 2564 1213 210 33 57 chr6 142323930 142324296 -40090946 + MLT1B LTR MaLR 15 371 -19 279 191 6 49 chr6 142324311 142324473 -40090769 + (TA)n Simple_repeat Simple_repeat 2 156 0 652 291 74 53 chr6 142324946 142325442 -40089800 + L2 LINE L2 2755 3261 -52 768 297 70 31 chr6 142325960 142326405 -40088837 + L2 LINE L2 2839 3300 -13 264 59 0 0 chr6 142326405 142326439 -40088803 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1781 145 30 82 chr6 142326576 142326617 -40088625 - MER7A DNA MER2_type -2692 346 304 312 70 0 0 chr6 142326617 142326686 -40088556 + L1PA3 LINE L1 6103 6171 0 1592 131 82 21 chr6 142326688 142327016 -40088226 + L1MA6 LINE L1 5953 6300 0 1781 145 30 82 chr6 142327016 142327336 -40087906 - MER7A DNA MER2_type -2735 303 2 228 377 19 9 chr6 142327484 142327590 -40087652 - MIR SINE MIR -152 110 4 259 260 0 65 chr6 142328111 142328188 -40087054 - L2 LINE L2 0 3313 3242 200 295 171 39 chr6 142328353 142328482 -40086760 + L2 LINE L2 3123 3268 -4 21 36 0 0 chr6 142328659 142328687 -40086555 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr6 142328879 142328918 -40086324 + AT_rich Low_complexity Low_complexity 1 39 0 191 88 29 0 chr6 142328986 142329020 -40086222 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 611 221 41 35 chr6 142329500 142329672 -40085570 - MIR SINE MIR -23 239 67 455 206 120 28 chr6 142329725 142329926 -40085316 + MLT1H LTR MaLR 322 549 0 514 300 35 86 chr6 142329939 142330395 -40084847 + L2 LINE L2 2030 2462 -852 508 232 63 32 chr6 142330395 142330706 -40084536 + MLT1G1 LTR MaLR 131 559 -36 641 282 42 46 chr6 142330720 142330979 -40084263 + MLT1J LTR MaLR 5 262 -249 9396 31 3 0 chr6 142331109 142333000 -40082242 + L1PA4 LINE L1 4259 6152 -3 318 242 0 61 chr6 142333299 142333398 -40081844 + L1MC4 LINE L1 6614 6706 -1336 * 335 257 64 37 chr6 142333389 142333498 -40081744 + L1MC4 LINE L1 6614 6725 -1317 2317 84 0 7 chr6 142333665 142334011 -40081231 - AluY SINE Alu 0 311 1 369 247 11 0 chr6 142334030 142334123 -40081119 + MLT1G1 LTR MaLR 1 94 -501 714 231 46 25 chr6 142334152 142334509 -40080733 + MLT1G1 LTR MaLR 116 590 -5 1921 155 7 3 chr6 142335204 142335500 -40079742 - AluSx SINE Alu -15 297 1 1349 233 81 40 chr6 142335661 142336155 -40079087 - LTR33A LTR ERVL -9 514 1 543 280 136 14 chr6 142336446 142336660 -40078582 + LTR33 LTR ERVL 6 245 -276 624 280 107 33 chr6 142337894 142338137 -40077105 - MIR SINE MIR 0 262 2 307 265 129 47 chr6 142339664 142339834 -40075408 + MIR SINE MIR 47 230 -32 989 279 244 16 chr6 142340670 142341624 -40073618 + L2 LINE L2 2126 3279 -34 4212 187 25 52 chr6 142342690 142343686 -40071556 - LTR5 LTR ERVK 0 969 1 437 275 37 25 chr6 142344407 142344605 -40070637 + L1ME3A LINE L1 5706 5905 -257 1925 93 38 7 chr6 142344944 142345233 -40070009 + L1MA1 LINE L1 5999 6296 -6 1053 305 52 12 chr6 142345377 142345780 -40069462 + L2 LINE L2 2356 2774 -540 3325 95 6 4 chr6 142345786 142346279 -40068963 + L1PB2 LINE L1 5542 6035 -116 1125 160 0 0 chr6 142346286 142346486 -40068756 + L1PBa LINE L1 1 200 -6663 2979 108 7 0 chr6 142346488 142347380 -40067862 + L1PBa LINE L1 636 1724 -5139 22263 126 11 97 chr6 142397661 142402054 -40013188 - L1P LINE L1 -1746 4400 451 246 62 0 0 chr6 142402054 142402086 -40013156 + (CAA)n Simple_repeat Simple_repeat 2 33 0 22263 126 11 97 chr6 142402086 142402500 -40012742 - L1P LINE L1 -5695 451 3 6167 138 50 16 chr6 142402501 142403619 -40011623 - Tigger1 DNA MER2_type -1237 1181 26 519 308 80 80 chr6 142403914 142404362 -40010880 - HAL1b LINE L1 -894 454 7 2020 77 0 18 chr6 142404392 142404677 -40010565 + L1PA5 LINE L1 5873 6152 -2 971 121 0 0 chr6 142404724 142404856 -40010386 - AluSq/x SINE Alu -181 132 1 27 62 0 0 chr6 142404932 142404980 -40010262 + AT_rich Low_complexity Low_complexity 1 48 0 753 283 31 62 chr6 142405486 142405744 -40009498 - MIR SINE MIR -10 252 3 971 285 36 48 chr6 142406650 142407071 -40008171 - L2 LINE L2 -339 2975 2560 524 226 9 0 chr6 142408030 142408136 -40007106 - MER81 DNA DNA -7 107 1 486 354 96 28 chr6 142408139 142408461 -40006781 + L2 LINE L2 2929 3272 0 1823 174 3 16 chr6 142408565 142408881 -40006361 + AluJo SINE Alu 1 312 0 21 0 0 0 chr6 142411057 142411078 -40004164 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 142411778 142411798 -40003444 + (T)n Simple_repeat Simple_repeat 1 20 0 316 274 9 0 chr6 142411949 142412055 -40003187 + (CA)n Simple_repeat Simple_repeat 1 107 0 263 251 175 62 chr6 142412123 142412478 -40002764 - L1MC4 LINE L1 -130 7912 7518 333 272 22 38 chr6 142412508 142412692 -40002550 - L1ME3 LINE L1 -22 6140 5960 181 171 0 0 chr6 142412694 142412729 -40002513 + L2 LINE L2 3275 3309 -4 968 117 62 7 chr6 142414073 142414218 -40001024 + AluJb SINE Alu 147 299 -13 2196 132 0 0 chr6 142414586 142414889 -40000353 - AluSx SINE Alu -9 303 1 204 289 156 33 chr6 142414991 142415081 -40000161 + L2 LINE L2 3169 3269 -3 182 203 125 0 chr6 142416517 142416581 -39998661 - L2 LINE L2 -80 3233 3162 289 331 44 7 chr6 142416843 142416979 -39998263 - L2 LINE L2 -467 2847 2707 290 197 236 0 chr6 142416983 142417061 -39998181 - L1MA10 LINE L1 0 6334 6257 2845 227 29 44 chr6 142417061 142418283 -39996959 - L1ME1 LINE L1 -99 6067 4851 1841 224 23 2 chr6 142418289 142418775 -39996467 + L1M4 LINE L1 2636 3131 -3015 1667 122 0 0 chr6 142420567 142420804 -39994438 + THE1B LTR MaLR 1 237 -127 38780 54 30 2 chr6 142420804 142426789 -39988453 - L1PA3 LINE L1 -1 6154 4 899 148 0 0 chr6 142426789 142426931 -39988311 + THE1B LTR MaLR 221 362 -2 2137 130 0 19 chr6 142427644 142427960 -39987282 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr6 142431012 142431035 -39984207 + AT_rich Low_complexity Low_complexity 1 23 0 181 198 25 123 chr6 142431983 142432064 -39983178 + L2 LINE L2 3241 3313 0 1318 220 4 8 chr6 142432903 142433171 -39982071 + Tigger7 DNA MER2_type 1 267 -466 558 149 11 0 chr6 142433169 142433263 -39981979 + Tigger7 DNA MER2_type 2489 2583 -4 * 21 36 0 0 chr6 142434003 142434031 -39981211 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr6 142434728 142434771 -39980471 + (TA)n Simple_repeat Simple_repeat 2 44 0 2191 96 3 3 chr6 142434821 142435114 -39980128 - AluSc SINE Alu -16 293 1 476 226 44 29 chr6 142437773 142437910 -39977332 - L2 LINE L2 0 3313 3175 1197 202 0 43 chr6 142437918 142438195 -39977047 + AluJo SINE Alu 44 308 -4 461 259 4 113 chr6 142438198 142438464 -39976778 - L2 LINE L2 -141 3172 2936 306 360 93 6 chr6 142438513 142438674 -39976568 - MIR3 SINE MIR -16 192 18 2211 125 3 0 chr6 142438710 142439021 -39976221 - AluSx SINE Alu 0 312 1 223 216 14 68 chr6 142439916 142439990 -39975252 - MER5A DNA MER1_type -18 171 102 907 179 35 86 chr6 142440715 142440746 -39974496 - MLT2B1 LTR ERVL -8 512 481 345 47 0 0 chr6 142440746 142440789 -39974453 + (CA)n Simple_repeat Simple_repeat 2 44 0 907 179 35 86 chr6 142440789 142441211 -39974031 - MLT2B1 LTR ERVL -39 481 6 400 220 121 29 chr6 142442703 142442876 -39972366 - MER53 DNA DNA 0 189 1 23 54 0 0 chr6 142444184 142444221 -39971021 + AT_rich Low_complexity Low_complexity 1 37 0 758 219 5 54 chr6 142444386 142444591 -39970651 + MER52A LTR ERV1 1 195 -1560 * 6610 166 45 63 chr6 142444571 142445971 -39969271 + MER52A LTR ERV1 381 1755 0 1511 219 3 17 chr6 142446121 142446423 -39968819 + AluJo SINE Alu 1 298 -14 880 275 89 77 chr6 142446458 142447094 -39968148 - L1ME LINE L1 -518 5627 5000 1791 193 7 13 chr6 142447094 142447399 -39967843 - AluJb SINE Alu -9 303 1 880 275 89 77 chr6 142447399 142448048 -39967194 - L1ME LINE L1 -1145 5000 4360 1135 151 80 8 chr6 142448048 142448116 -39967126 + L1MA5A LINE L1 6040 6102 -195 540 0 0 0 chr6 142448116 142448176 -39967066 + (TTATA)n Simple_repeat Simple_repeat 4 63 0 1135 151 80 8 chr6 142448176 142448346 -39966896 + L1MA5A LINE L1 6102 6295 -2 880 275 89 77 chr6 142448346 142449304 -39965938 - L1ME LINE L1 -1785 4360 3347 1948 30 30 0 chr6 142449529 142449794 -39965448 + L1PA4 LINE L1 5905 6176 0 311 329 102 35 chr6 142450102 142450274 -39964968 - L1ME LINE L1 -4759 1551 1355 5341 67 14 4 chr6 142450274 142450971 -39964271 - L1PA7 LINE L1 -2 6152 5449 311 329 102 35 chr6 142450971 142451053 -39964189 - L1ME LINE L1 -4955 1355 1280 562 253 108 42 chr6 142451080 142451412 -39963830 - L1ME LINE L1 -4862 1257 904 980 299 67 45 chr6 142451529 142452234 -39963008 - L1ME LINE L1 -5398 721 2 2048 129 0 39 chr6 142452768 142453077 -39962165 - AluSx SINE Alu -15 297 1 256 235 9 43 chr6 142453964 142454079 -39961163 - L1M4 LINE L1 -2160 3986 3876 1738 175 3 10 chr6 142454116 142454419 -39960823 + AluJb SINE Alu 1 301 -11 282 301 14 89 chr6 142454578 142454724 -39960518 - MIR SINE MIR -52 210 76 23 0 0 0 chr6 142459347 142459370 -39955872 + AT_rich Low_complexity Low_complexity 1 23 0 180 282 73 91 chr6 142460323 142460433 -39954809 + L2 LINE L2 3163 3270 -43 376 300 96 36 chr6 142460614 142460864 -39954378 - MER102a DNA MER1_type -25 305 41 216 0 0 0 chr6 142462321 142462345 -39952897 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 207 0 0 0 chr6 142464290 142464313 -39950929 + (A)n Simple_repeat Simple_repeat 1 23 0 333 0 0 0 chr6 142464422 142464459 -39950783 + (TG)n Simple_repeat Simple_repeat 1 37 0 553 286 119 7 chr6 142464471 142464648 -39950594 - MIR SINE MIR -33 229 38 848 210 11 11 chr6 142464708 142464884 -39950358 + MIR SINE MIR 66 241 -21 2749 142 21 17 chr6 142465528 142465993 -39949249 + MLT1C LTR MaLR 1 467 0 2502 267 64 11 chr6 142466715 142467557 -39947685 - L1MEc LINE L1 -5453 943 57 1327 210 4 11 chr6 142467620 142467901 -39947341 + L1PA16 LINE L1 5888 6166 0 1492 99 0 0 chr6 142467978 142468189 -39947053 - L1PA13 LINE L1 -2 6161 5951 307 278 113 33 chr6 142468315 142468466 -39946776 + MIR SINE MIR 28 190 -72 543 297 75 21 chr6 142469234 142469473 -39945769 + MIR SINE MIR 5 256 -6 384 167 42 62 chr6 142469929 142470025 -39945217 - MLT1L LTR MaLR -361 254 161 515 218 9 36 chr6 142470141 142470251 -39944991 + L2 LINE L2 3203 3309 -4 301 336 58 15 chr6 142470623 142470760 -39944482 - MER5A DNA MER1_type -11 178 36 22 0 0 0 chr6 142470924 142470946 -39944296 + AT_rich Low_complexity Low_complexity 1 22 0 280 357 48 18 chr6 142470957 142471184 -39944058 - L2 LINE L2 -444 2870 2637 722 131 0 0 chr6 142472020 142472127 -39943115 + AluSg/x SINE Alu 194 300 -10 1876 139 0 20 chr6 142472308 142472603 -39942639 - AluJb SINE Alu -23 289 1 4458 187 71 31 chr6 142473256 142474256 -39940986 - MER45B DNA AcHobo 0 1040 1 1501 128 0 92 chr6 142474407 142474680 -39940562 - AluJo SINE Alu -22 290 43 1448 218 24 13 chr6 142475761 142476059 -39939183 - AluJb SINE Alu -1 301 1 393 39 0 0 chr6 142476105 142476156 -39939086 + (TG)n Simple_repeat Simple_repeat 1 51 0 2889 0 0 0 chr6 142476828 142477136 -39938106 + AluYa5 SINE Alu 1 308 -3 203 152 0 0 chr6 142477605 142477638 -39937604 + CT-rich Low_complexity Low_complexity 2 34 0 22 35 0 0 chr6 142478472 142478501 -39936741 + AT_rich Low_complexity Low_complexity 1 29 0 353 356 21 52 chr6 142478786 142478977 -39936265 + MIR SINE MIR 9 193 -69 21 0 0 0 chr6 142479145 142479166 -39936076 + AT_rich Low_complexity Low_complexity 1 21 0 195 322 66 41 chr6 142479257 142479378 -39935864 + MIR3 SINE MIR 36 159 -49 284 127 18 0 chr6 142480691 142480746 -39934496 + CT-rich Low_complexity Low_complexity 2 57 0 24 53 0 0 chr6 142481528 142481566 -39933676 + AT_rich Low_complexity Low_complexity 1 38 0 605 126 0 0 chr6 142481714 142481801 -39933441 - LTR12 LTR ERV1 0 714 628 377 172 42 36 chr6 142481804 142481911 -39933331 - LTR30 LTR ERV1 -80 642 377 724 134 48 120 chr6 142481918 142482127 -39933115 - LTR12 LTR ERV1 -421 293 100 * 1294 124 22 108 chr6 142482097 142482408 -39932834 - LTR12 LTR ERV1 -483 231 1 29 0 0 0 chr6 142482710 142482739 -39932503 + AT_rich Low_complexity Low_complexity 1 29 0 190 361 157 0 chr6 142483010 142483118 -39932124 - MIR3 SINE MIR -50 158 34 194 278 56 14 chr6 142483176 142483248 -39931994 + MIR3 SINE MIR 119 193 -15 21 0 0 0 chr6 142484015 142484036 -39931206 + AT_rich Low_complexity Low_complexity 1 21 0 243 289 82 37 chr6 142484860 142484995 -39930247 - MIR SINE MIR 0 262 122 236 302 86 17 chr6 142485149 142485265 -39929977 + L3b LINE CR1 1343 1466 -117 3061 155 32 9 chr6 142485610 142486172 -39929070 + L1MB3 LINE L1 5598 6172 -11 252 146 36 18 chr6 142486191 142486301 -39928941 + (TA)n Simple_repeat Simple_repeat 1 112 0 988 26 0 0 chr6 142487940 142488057 -39927185 - L1PA2 LINE L1 0 6155 6039 4190 192 48 29 chr6 142488786 142490338 -39924904 - L1MB7 LINE L1 -20 6164 4585 2456 75 0 0 chr6 142490338 142490643 -39924599 - AluSc SINE Alu -4 305 1 4190 192 48 29 chr6 142490643 142491046 -39924196 - L1MB7 LINE L1 -1599 4585 4191 3026 222 19 11 chr6 142491211 142491544 -39923698 - MER82 DNA MER2_type 0 653 311 2383 131 13 11 chr6 142491544 142491918 -39923324 + THE1C LTR MaLR 1 375 0 3026 222 19 11 chr6 142491918 142492227 -39923015 - MER82 DNA MER2_type -342 311 6 314 294 22 59 chr6 142492263 142492399 -39922843 - MIR SINE MIR -4 258 128 41 0 0 0 chr6 142493473 142493514 -39921728 + AT_rich Low_complexity Low_complexity 1 41 0 1389 204 6 35 chr6 142493889 142494202 -39921040 - AluJo SINE Alu -8 304 1 1850 219 69 128 chr6 142494755 142495695 -39919547 - L1ME3A LINE L1 -9 6161 5277 582 250 56 11 chr6 142496673 142496853 -39918389 + MIR SINE MIR 47 234 -28 261 0 0 0 chr6 142497733 142497762 -39917480 + (CA)n Simple_repeat Simple_repeat 2 30 0 207 233 35 70 chr6 142498241 142498327 -39916915 - MIR3 SINE MIR -26 182 100 306 0 0 0 chr6 142500309 142500343 -39914899 + (CA)n Simple_repeat Simple_repeat 1 34 0 200 246 0 49 chr6 142500559 142500620 -39914622 - L2 LINE L2 0 3313 3256 222 290 11 43 chr6 142504696 142504789 -39910453 - L2 LINE L2 -1 3271 3182 1039 185 62 67 chr6 142504803 142505186 -39910056 - MSTC LTR MaLR 0 428 1 4603 240 147 32 chr6 142505186 142506145 -39909097 - MSTC-int LTR MaLR 0 1735 888 2106 125 0 0 chr6 142506145 142506450 -39908792 - AluSx SINE Alu 0 305 1 4603 240 147 32 chr6 142506450 142507031 -39908211 - MSTC-int LTR MaLR -847 888 16 732 205 59 75 chr6 142507031 142507423 -39907819 - MSTD LTR MaLR -2 426 1 723 136 83 0 chr6 142507885 142508017 -39907225 + MSTC LTR MaLR 286 428 0 961 168 0 60 chr6 142508242 142508427 -39906815 + AluJo SINE Alu 13 186 -126 383 327 47 50 chr6 142509130 142509427 -39905815 + L3 LINE CR1 999 1294 -283 451 213 92 6 chr6 142510967 142511131 -39904111 - MER113 DNA MER1_type? -319 202 25 295 236 189 31 chr6 142511798 142511925 -39903317 + MIR SINE MIR 6 152 -110 370 304 65 30 chr6 142512506 142512674 -39902568 + MIR SINE MIR 76 249 -13 31 68 0 0 chr6 142513531 142513590 -39901652 + GC_rich Low_complexity Low_complexity 1 59 0 275 0 29 0 chr6 142515431 142515466 -39899776 + (TG)n Simple_repeat Simple_repeat 2 37 0 555 260 27 7 chr6 142519079 142519225 -39896017 - MIR SINE MIR -1 261 113 366 341 57 93 chr6 142521896 142522356 -39892886 + L2 LINE L2 2830 3272 0 578 280 78 50 chr6 142522668 142522701 -39892541 + MIR SINE MIR 5 36 -226 2413 103 0 0 chr6 142522701 142523013 -39892229 + AluSx SINE Alu 1 312 0 578 280 78 50 chr6 142523013 142523197 -39892045 + MIR SINE MIR 36 228 -34 631 207 149 11 chr6 142523943 142524131 -39891111 - MER20 DNA MER1_type -1 218 5 435 19 0 0 chr6 142525284 142525336 -39889906 + (CA)n Simple_repeat Simple_repeat 2 53 0 433 279 83 87 chr6 142525959 142525992 -39889250 + L2 LINE L2 2955 2987 -285 189 0 0 0 chr6 142525992 142526013 -39889229 + (TAA)n Simple_repeat Simple_repeat 2 22 0 433 279 83 87 chr6 142526013 142526244 -39888998 + L2 LINE L2 2987 3218 -54 209 184 26 0 chr6 142527098 142527136 -39888106 - MIR3 SINE MIR -41 167 129 688 272 32 37 chr6 142527281 142527498 -39887744 + MIR SINE MIR 28 243 -19 481 258 40 35 chr6 142527653 142527851 -39887391 + L1ME3A LINE L1 5972 6170 0 290 328 69 5 chr6 142528148 142528352 -39886890 - L1MC/D LINE L1 -2048 5760 5544 30 27 0 0 chr6 142528529 142528566 -39886676 + AT_rich Low_complexity Low_complexity 1 37 0 314 182 0 0 chr6 142528786 142528841 -39886401 - MIR SINE MIR -14 248 194 292 329 67 18 chr6 142529950 142530114 -39885128 - MIR3 SINE MIR -8 200 29 235 169 28 0 chr6 142530192 142530263 -39884979 + (TTCA)n Simple_repeat Simple_repeat 3 75 0 2215 114 3 0 chr6 142532581 142532879 -39882363 - AluSq SINE Alu -14 299 1 21 0 0 0 chr6 142532985 142533006 -39882236 + AT_rich Low_complexity Low_complexity 1 21 0 273 364 36 0 chr6 142534190 142534330 -39880912 - MIR SINE MIR -61 201 57 488 326 78 14 chr6 142536652 142536999 -39878243 - L2 LINE L2 -516 2798 2430 207 0 0 0 chr6 142537160 142537183 -39878059 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 567 124 11 11 chr6 142537191 142537280 -39877962 - FRAM SINE Alu -30 146 58 524 95 0 0 chr6 142537600 142537674 -39877568 + MADE1 DNA Mariner 7 80 0 1567 190 68 68 chr6 142538409 142538866 -39876376 + MLT1C LTR MaLR 11 467 0 27 29 0 0 chr6 142538903 142538937 -39876305 + AT_rich Low_complexity Low_complexity 1 34 0 344 324 59 0 chr6 142539261 142539363 -39875879 - L2 LINE L2 -7 3265 3158 2366 68 3 10 chr6 142539729 142540024 -39875218 - AluSx SINE Alu -19 293 1 2056 147 0 0 chr6 142541318 142541624 -39873618 + AluSx SINE Alu 1 306 -6 2984 72 35 63 chr6 142542098 142542555 -39872687 - MLT2A1 LTR ERVL 0 444 1 19551 65 4 7 chr6 142542555 142545151 -39870091 - HERVL-A1 LTR ERVL 0 5654 3066 2961 80 57 7 chr6 142545390 142545428 -39869814 - MLT2A1 LTR ERVL 0 444 409 258 32 0 0 chr6 142545428 142545459 -39869783 + (TA)n Simple_repeat Simple_repeat 2 32 0 2961 80 57 7 chr6 142545459 142545843 -39869399 - MLT2A1 LTR ERVL -35 409 1 22 80 0 0 chr6 142545970 142546020 -39869222 + AT_rich Low_complexity Low_complexity 1 50 0 258 81 0 0 chr6 142546237 142546274 -39868968 + (TG)n Simple_repeat Simple_repeat 2 38 0 220 261 0 0 chr6 142548557 142548603 -39866639 + (TG)n Simple_repeat Simple_repeat 2 47 0 351 252 19 19 chr6 142548603 142548710 -39866532 + MER81 DNA DNA 1 107 -7 218 208 19 19 chr6 142548921 142548974 -39866268 + MER5B DNA MER1_type 121 173 -5 455 310 7 7 chr6 142549039 142549181 -39866061 - MIR3 SINE MIR -47 161 20 216 97 0 0 chr6 142549243 142549274 -39865968 + (A)n Simple_repeat Simple_repeat 1 31 0 284 214 174 31 chr6 142549602 142549700 -39865542 - MIR SINE MIR -119 143 32 264 278 194 13 chr6 142549723 142549913 -39865329 + MIR SINE MIR 1 261 -1 216 332 36 76 chr6 142549962 142550185 -39865057 + L2 LINE L2 2278 2491 -823 257 298 68 125 chr6 142550458 142550857 -39864385 + L2 LINE L2 2882 3257 -15 25 75 0 0 chr6 142552246 142552299 -39862943 + AT_rich Low_complexity Low_complexity 1 53 0 2053 112 34 3 chr6 142552740 142553036 -39862206 - AluSc SINE Alu -4 305 1 2088 169 15 20 chr6 142553038 142553447 -39861795 - L1MB8 LINE L1 -5 6173 5767 1138 207 29 4 chr6 142553472 142553752 -39861490 - L1MB8 LINE L1 -816 5330 5044 440 201 3 8 chr6 142553735 142553841 -39861401 - L1PB4 LINE L1 -224 5932 5858 * 360 137 0 98 chr6 142553838 142553940 -39861302 - L1MB8 LINE L1 -1077 5069 4978 * 4979 127 39 6 chr6 142553949 142554766 -39860476 - L1PA16 LINE L1 -3 6163 5320 209 156 0 22 chr6 142554906 142554951 -39860291 + (TA)n Simple_repeat Simple_repeat 2 45 0 374 243 88 44 chr6 142555034 142555170 -39860072 + MER117 DNA MER1_type 30 171 -26 218 198 25 25 chr6 142555332 142555353 -39859889 + (TAA)n Simple_repeat Simple_repeat 2 22 -60 2241 102 0 0 chr6 142555353 142555637 -39859605 + AluSx SINE Alu 1 284 -28 218 198 25 25 chr6 142555637 142555696 -39859546 + (TAA)n Simple_repeat Simple_repeat 21 82 0 417 332 39 24 chr6 142555819 142556017 -39859225 - MIR SINE MIR -38 224 21 1962 144 9 40 chr6 142556017 142556363 -39858879 - L1PB4 LINE L1 0 6156 5822 1552 146 4 21 chr6 142556575 142556815 -39858427 - AluSx SINE Alu -76 236 1 1416 266 90 47 chr6 142557071 142557326 -39857916 - L2 LINE L2 -4 3309 3066 2198 72 0 0 chr6 142557326 142557604 -39857638 - AluY SINE Alu 0 311 34 1416 266 90 47 chr6 142557604 142558282 -39856960 - L2 LINE L2 -247 3066 2342 305 223 154 46 chr6 142558282 142558412 -39856830 + MLT1J2 LTR MaLR 2 145 -305 574 290 47 0 chr6 142558662 142558831 -39856411 - L2 LINE L2 -1040 2274 2098 1065 153 11 42 chr6 142559188 142559378 -39855864 - MER20 DNA MER1_type -1 218 35 2152 86 20 17 chr6 142560194 142560486 -39854756 + AluSx SINE Alu 1 293 -19 592 197 94 0 chr6 142560513 142560630 -39854612 - MER58A DNA MER1_type 0 128 1 256 337 90 30 chr6 142561058 142561358 -39853884 - L2 LINE L2 -1195 2119 1802 320 291 191 73 chr6 142562396 142562616 -39852626 - MIR SINE MIR -4 258 13 212 302 0 70 chr6 142563029 142563115 -39852127 - MIR3 SINE MIR -25 183 104 285 238 0 83 chr6 142565183 142565267 -39849975 - MIR3 SINE MIR -18 190 114 1563 134 0 60 chr6 142566008 142566277 -39848965 + AluJb SINE Alu 14 266 -46 216 94 57 0 chr6 142566285 142566338 -39848904 + (TA)n Simple_repeat Simple_repeat 1 56 0 360 0 0 0 chr6 142566365 142566405 -39848837 + (TA)n Simple_repeat Simple_repeat 1 40 0 685 161 139 0 chr6 142566701 142566838 -39848404 - FAM SINE Alu 0 49 1 1937 142 0 46 chr6 142566899 142567222 -39848020 - AluSx SINE Alu -4 308 1 305 326 91 8 chr6 142567978 142568110 -39847132 - MIR SINE MIR -115 147 5 1583 263 72 22 chr6 142568133 142568967 -39846275 - L2 LINE L2 -4 3309 2435 452 250 42 135 chr6 142569173 142569573 -39845669 - L1MEd LINE L1 -3525 2604 2242 364 303 92 66 chr6 142569589 142569860 -39845382 - L1MEd LINE L1 -5500 619 342 335 283 101 19 chr6 142569920 142570079 -39845163 - L1MEd LINE L1 -5881 238 67 1820 263 35 16 chr6 142570205 142570784 -39844458 - L1MC4 LINE L1 -751 7291 6702 216 97 0 0 chr6 142570785 142570816 -39844426 + (TG)n Simple_repeat Simple_repeat 2 32 0 642 243 28 28 chr6 142570904 142571081 -39844161 + MIR SINE MIR 57 233 -29 2239 53 0 4 chr6 142571791 142572110 -39843132 + AluY SINE Alu 21 338 0 213 196 0 0 chr6 142572215 142572261 -39842981 + (TA)n Simple_repeat Simple_repeat 1 46 0 324 64 0 0 chr6 142572267 142572314 -39842928 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 2034 143 45 28 chr6 142572314 142572671 -39842571 - Tigger2a DNA MER2_type -71 363 1 1379 114 5 5 chr6 142572843 142573068 -39842174 - AluSc SINE Alu 0 311 87 523 332 70 0 chr6 142573863 142574104 -39841138 - MIR SINE MIR -2 260 3 24 0 0 0 chr6 142574564 142574588 -39840654 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 142575094 142575119 -39840123 + AT_rich Low_complexity Low_complexity 1 25 0 980 264 0 5 chr6 142575227 142575443 -39839799 - MER58A DNA MER1_type 0 224 10 189 333 29 57 chr6 142576296 142576401 -39838841 + L2 LINE L2 3171 3272 0 254 299 147 103 chr6 142576510 142576714 -39838528 - L2 LINE L2 -6 3266 3054 924 274 120 20 chr6 142577111 142577771 -39837471 - L2 LINE L2 -4 3309 2594 194 216 80 80 chr6 142577767 142577855 -39837387 + MIR SINE MIR 170 257 -5 * 362 239 80 35 chr6 142578508 142578621 -39836621 - MIR SINE MIR -125 137 20 278 308 148 44 chr6 142578643 142578825 -39836417 - MIR3 SINE MIR -7 201 1 604 305 6 0 chr6 142580001 142580175 -39835067 - MIR SINE MIR -11 251 77 2350 119 3 42 chr6 142580175 142580554 -39834688 + THE1B LTR MaLR 1 364 0 374 315 121 0 chr6 142580573 142580722 -39834520 - MIR SINE MIR -70 192 26 2094 132 15 54 chr6 142580735 142581144 -39834098 - L1PA16 LINE L1 -10 6156 5764 29 47 0 0 chr6 142581232 142581275 -39833967 + AT_rich Low_complexity Low_complexity 1 43 0 32 43 0 0 chr6 142581526 142581572 -39833670 + AT_rich Low_complexity Low_complexity 1 46 0 199 291 57 113 chr6 142583365 142583661 -39831581 + L2 LINE L2 2425 2736 -578 186 43 0 0 chr6 142583661 142583684 -39831558 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1613 171 29 4 chr6 142583686 142583960 -39831282 - AluJb SINE Alu -31 281 1 199 291 57 113 chr6 142583960 142584083 -39831159 + L2 LINE L2 2737 2823 -491 * 242 267 38 107 chr6 142584066 142584197 -39831045 + L2 LINE L2 3132 3253 -19 252 0 0 0 chr6 142584728 142584756 -39830486 + (CA)n Simple_repeat Simple_repeat 1 28 0 211 276 92 41 chr6 142584783 142584881 -39830361 + MIR SINE MIR 88 190 -72 21 36 0 0 chr6 142586875 142586903 -39828339 + AT_rich Low_complexity Low_complexity 1 28 0 374 252 5 0 chr6 142590119 142590334 -39824908 + (TCCA)n Simple_repeat Simple_repeat 1 216 0 294 272 36 77 chr6 142591735 142592050 -39823192 - L1MEc LINE L1 -3631 2584 2286 1778 169 23 10 chr6 142592050 142592358 -39822884 - AluJb SINE Alu 0 312 1 294 272 36 77 chr6 142592358 142592432 -39822810 - L1MEc LINE L1 -3929 2286 2211 22 35 0 0 chr6 142592643 142592672 -39822570 + AT_rich Low_complexity Low_complexity 1 29 0 1796 198 20 3 chr6 142592873 142593227 -39822015 - L1PB4 LINE L1 0 6156 5797 344 282 0 9 chr6 142593295 142593405 -39821837 - L1MEc LINE L1 -4746 1650 1542 236 218 39 26 chr6 142593449 142593527 -39821715 - HAL1 LINE L1 -988 1519 1441 326 336 10 0 chr6 142594530 142594634 -39820608 + MER94 DNA DNA 5 109 -25 300 27 0 0 chr6 142595419 142595456 -39819786 + (TG)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr6 142597112 142597135 -39818107 + AT_rich Low_complexity Low_complexity 1 23 0 2047 86 0 0 chr6 142597250 142597506 -39817736 - AluY SINE Alu -6 305 50 502 283 72 0 chr6 142598045 142598183 -39817059 - MER58B DNA MER1_type 0 341 194 1225 117 83 5 chr6 142598639 142598844 -39816398 + MER46A DNA MER2_type 16 236 0 1851 163 20 0 chr6 142599474 142599775 -39815467 - AluSx SINE Alu -3 309 3 563 251 113 42 chr6 142600403 142600642 -39814600 + MIR SINE MIR 7 262 0 300 325 157 11 chr6 142600640 142600831 -39814411 + MIR SINE MIR 32 250 -12 * 566 292 57 10 chr6 142602448 142602640 -39812602 + L3 LINE CR1 1374 1574 -3 234 0 0 0 chr6 142602895 142602921 -39812321 + (TA)n Simple_repeat Simple_repeat 1 26 0 2013 80 6 68 chr6 142604883 142605194 -39810048 - AluSc SINE Alu -17 292 1 399 239 136 136 chr6 142605235 142605604 -39809638 + L2 LINE L2 2944 3312 -1 347 402 6 22 chr6 142605623 142605802 -39809440 + L3 LINE CR1 1384 1559 -18 415 230 109 46 chr6 142607728 142607902 -39807340 - L2 LINE L2 -1 3312 3128 688 269 78 29 chr6 142608301 142608724 -39806518 + L1MD3 LINE L1 7006 7545 -450 340 313 48 0 chr6 142609061 142609227 -39806015 + L1MC4 LINE L1 7869 8042 0 383 318 84 43 chr6 142609561 142609907 -39805335 - L2 LINE L2 -673 2641 2282 711 261 194 30 chr6 142612706 142613320 -39801922 - L2 LINE L2 -106 3207 2493 341 272 22 11 chr6 142613676 142613768 -39801474 - L2 LINE L2 0 3313 3221 2160 103 24 0 chr6 142615267 142615389 -39799853 + AluSp SINE Alu 1 119 -194 492 18 0 0 chr6 142615389 142615446 -39799796 + (CA)n Simple_repeat Simple_repeat 2 58 0 2160 103 24 0 chr6 142615446 142615614 -39799628 + AluSp SINE Alu 119 298 -15 511 150 0 14 chr6 142615622 142615893 -39799349 + AluJ SINE Alu 1 309 0 2138 113 0 3 chr6 142616294 142616586 -39798656 + AluSc SINE Alu 1 291 -18 423 0 0 0 chr6 142616960 142617007 -39798235 + (TA)n Simple_repeat Simple_repeat 2 48 0 211 111 19 19 chr6 142617938 142617992 -39797250 + (CCA)n Simple_repeat Simple_repeat 2 55 0 22 0 0 0 chr6 142619047 142619069 -39796173 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 142619841 142619863 -39795379 + AT_rich Low_complexity Low_complexity 1 22 0 214 356 162 9 chr6 142620995 142621211 -39794031 - MIR SINE MIR 0 262 14 22 35 0 0 chr6 142621755 142621784 -39793458 + AT_rich Low_complexity Low_complexity 1 29 0 810 289 22 9 chr6 142621992 142622220 -39793022 - MIR SINE MIR 0 262 32 233 348 37 52 chr6 142622378 142622513 -39792729 + MIR3 SINE MIR 4 136 -72 2190 102 30 7 chr6 142622664 142622967 -39792275 - AluSg SINE Alu 0 310 1 457 175 29 19 chr6 142622987 142623090 -39792152 + L2 LINE L2 2173 2276 -1038 1500 288 67 23 chr6 142623090 142623882 -39791360 + L2 LINE L2 2491 3313 0 368 272 123 25 chr6 142624151 142624313 -39790929 - Charlie8 DNA MER1_type -2238 179 2 706 331 46 42 chr6 142624576 142625050 -39790192 - L2 LINE L2 -12 3301 2826 1218 319 76 30 chr6 142625063 142626121 -39789121 - L1MEc LINE L1 -5211 1185 80 342 226 34 55 chr6 142626190 142626336 -39788906 - L1MC5 LINE L1 -44 7917 7775 22 35 0 0 chr6 142626997 142627026 -39788216 + AT_rich Low_complexity Low_complexity 1 29 0 230 272 184 18 chr6 142628838 142628952 -39786290 - MIR SINE MIR -5 257 125 1538 80 0 9 chr6 142629485 142629709 -39785533 - L1PA13 LINE L1 -2 6161 5940 1846 99 4 0 chr6 142629710 142629972 -39785270 + L1PA12 LINE L1 5621 5883 -285 1184 202 19 112 chr6 142630262 142630673 -39784569 - MLT1A2 LTR MaLR 0 374 2 360 0 0 0 chr6 142631147 142631187 -39784055 + (TG)n Simple_repeat Simple_repeat 2 41 0 740 134 0 0 chr6 142631196 142631308 -39783934 - AluSg/x SINE Alu -11 298 187 2772 16 0 0 chr6 142631384 142631689 -39783553 + AluYa5 SINE Alu 1 305 -6 29 70 0 0 chr6 142632295 142632352 -39782890 + AT_rich Low_complexity Low_complexity 1 57 0 247 344 82 16 chr6 142632626 142632809 -39782433 + MIR SINE MIR 3 197 -65 917 279 77 41 chr6 142633050 142633516 -39781726 - L2 LINE L2 0 3313 2831 201 269 115 29 chr6 142633594 142633698 -39781544 - MIR SINE MIR -80 128 16 205 282 0 0 chr6 142634855 142634894 -39780348 - L2 LINE L2 -24 3248 3210 222 246 197 0 chr6 142634973 142635034 -39780208 - L2 LINE L2 -11 3261 3189 308 146 0 55 chr6 142635385 142635440 -39779802 + LTR40a LTR ERVL 3 54 -465 1466 233 67 53 chr6 142635549 142635999 -39779243 + LTR40a LTR ERVL 64 519 0 4911 249 42 72 chr6 142636000 142637659 -39777583 + HERVL40 LTR ERVL 1 1608 -3922 2439 235 85 29 chr6 142637659 142637873 -39777369 + HERVL40 LTR ERVL 2520 2721 -2809 2304 68 7 3 chr6 142637873 142638168 -39777074 - AluY SINE Alu -14 297 2 2439 235 85 29 chr6 142638168 142639606 -39775636 + HERVL40 LTR ERVL 2721 4380 -1150 523 191 0 0 chr6 142639620 142639714 -39775528 + LTR40a LTR ERVL 426 519 0 2159 203 40 61 chr6 142639797 142640422 -39774820 - MER74B LTR ERVL -10 612 1 918 315 80 20 chr6 142640429 142640880 -39774362 - L2 LINE L2 -669 2645 2168 405 242 42 0 chr6 142641541 142641636 -39773606 + LTR40a LTR ERVL 418 516 -3 192 204 0 45 chr6 142642365 142642409 -39772833 - MIR SINE MIR -113 95 54 22 35 0 0 chr6 142643780 142643809 -39771433 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 142643866 142643897 -39771345 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr6 142646863 142646906 -39768336 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr6 142647141 142647168 -39768074 + AT_rich Low_complexity Low_complexity 1 27 0 33 43 0 0 chr6 142650116 142650163 -39765079 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr6 142650688 142650714 -39764528 + AT_rich Low_complexity Low_complexity 1 26 0 346 266 26 87 chr6 142651386 142651533 -39763709 + L2 LINE L2 3099 3229 -84 1131 209 92 0 chr6 142651533 142651825 -39763417 - MER33 DNA MER1_type -1 323 5 346 266 26 87 chr6 142651825 142651906 -39763336 + L2 LINE L2 3229 3313 0 189 0 0 0 chr6 142651959 142651980 -39763262 + (T)n Simple_repeat Simple_repeat 1 21 0 1125 186 92 41 chr6 142652215 142652369 -39762873 + L1MA10 LINE L1 6000 6145 -189 180 0 0 0 chr6 142652369 142652389 -39762853 + (CA)n Simple_repeat Simple_repeat 1 20 0 1125 186 92 41 chr6 142652389 142652551 -39762691 + L1MA10 LINE L1 6145 6332 -2 510 322 61 17 chr6 142652578 142652829 -39762413 + MIR SINE MIR 1 262 0 213 250 19 0 chr6 142653047 142653099 -39762143 + MIR SINE MIR 210 262 0 324 0 0 0 chr6 142653321 142653357 -39761885 + (TG)n Simple_repeat Simple_repeat 2 37 0 714 231 0 0 chr6 142653520 142653654 -39761588 + FAM SINE Alu 1 134 -51 243 344 0 0 chr6 142654127 142654188 -39761054 - L2 LINE L2 -52 3220 3160 469 242 8 21 chr6 142655184 142655431 -39759811 + CT-rich Low_complexity Low_complexity 1 243 0 240 35 0 0 chr6 142655459 142655488 -39759754 + (T)n Simple_repeat Simple_repeat 1 29 0 2052 85 4 15 chr6 142657670 142657940 -39757302 + AluSx SINE Alu 44 310 -2 28 48 0 0 chr6 142658678 142658720 -39756522 + AT_rich Low_complexity Low_complexity 1 42 0 2501 61 0 0 chr6 142659417 142659711 -39755531 + AluY SINE Alu 6 299 -12 30 27 0 0 chr6 142659716 142659753 -39755489 + AT_rich Low_complexity Low_complexity 1 37 0 467 68 0 14 chr6 142659763 142659836 -39755406 + (TG)n Simple_repeat Simple_repeat 1 72 0 2276 95 3 0 chr6 142662520 142662816 -39752426 + AluSx SINE Alu 1 297 -15 573 273 0 36 chr6 142663789 142663928 -39751314 + L2 LINE L2 3139 3272 0 181 357 61 0 chr6 142664059 142664157 -39751085 + L2 LINE L2 2380 2483 -831 1940 146 0 7 chr6 142664614 142664916 -39750326 - AluSx SINE Alu -12 300 1 204 67 0 0 chr6 142665361 142665391 -39749851 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 1206 82 0 47 chr6 142665606 142665776 -39749466 - AluSp SINE Alu -3 310 149 335 203 78 0 chr6 142667696 142667760 -39747482 - L2 LINE L2 -18 3295 3227 306 0 0 0 chr6 142668679 142668713 -39746529 + (T)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr6 142669420 142669448 -39745794 + AT_rich Low_complexity Low_complexity 1 28 0 336 218 9 109 chr6 142669621 142669731 -39745511 + L2 LINE L2 3215 3313 0 2121 116 0 13 chr6 142669875 142670177 -39745065 + AluSx SINE Alu 5 302 -10 189 121 0 0 chr6 142671098 142671131 -39744111 + (TG)n Simple_repeat Simple_repeat 1 33 0 2026 125 113 0 chr6 142672050 142672377 -39742865 - THE1B LTR MaLR 0 364 1 2287 104 0 0 chr6 142674626 142674925 -39740317 + AluSg SINE Alu 5 303 -7 2902 159 25 18 chr6 142675374 142675939 -39739303 + L1MA4 LINE L1 5731 6299 -1 183 256 0 0 chr6 142676116 142676155 -39739087 + MIR SINE MIR 220 258 -4 231 88 0 0 chr6 142676549 142676583 -39738659 + (CA)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chr6 142677116 142677137 -39738105 + (CA)n Simple_repeat Simple_repeat 2 22 0 337 270 120 0 chr6 142677369 142677469 -39737773 + MIR SINE MIR 108 219 -43 2163 109 3 28 chr6 142678188 142678508 -39736734 - AluSp SINE Alu -1 312 1 202 292 28 14 chr6 142679608 142679680 -39735562 + L2 LINE L2 3241 3313 0 1252 244 80 26 chr6 142679965 142680391 -39734851 - L2 LINE L2 -4 3309 2861 316 103 35 0 chr6 142680400 142680458 -39734784 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 239 368 96 61 chr6 142680523 142680784 -39734458 - L2 LINE L2 0 3272 3003 24 0 0 0 chr6 142682883 142682907 -39732335 + AT_rich Low_complexity Low_complexity 1 24 0 858 259 21 29 chr6 142682922 142683165 -39732077 + MIR SINE MIR 21 261 -1 1592 138 17 31 chr6 142683577 142683868 -39731374 + L1MA9 LINE L1 5647 5933 -379 1211 199 78 21 chr6 142683980 142684341 -39730901 + L1MA9 LINE L1 5896 6269 -43 549 278 110 41 chr6 142685813 142686421 -39728821 - L1ME4a LINE L1 -17 6104 5457 1066 221 68 35 chr6 142686660 142686999 -39728243 - L1ME3A LINE L1 0 6170 5821 311 318 39 22 chr6 142687538 142687717 -39727525 + L2 LINE L2 1236 1417 -1897 896 342 86 25 chr6 142687788 142688524 -39726718 + L2 LINE L2 1891 2671 -643 1145 244 34 15 chr6 142688975 142689241 -39726001 - L1MEc LINE L1 -6089 307 37 288 277 266 23 chr6 142689344 142689521 -39725721 - MIR SINE MIR -6 256 37 582 322 145 11 chr6 142689681 142690180 -39725062 + L2 LINE L2 2725 3313 0 378 373 51 24 chr6 142690208 142690661 -39724581 - L2 LINE L2 -102 3170 2600 419 302 40 7 chr6 142691499 142691648 -39723594 - MIR3 SINE MIR 0 208 55 271 301 71 18 chr6 142692154 142692267 -39722975 - MIR SINE MIR -68 140 22 192 310 28 0 chr6 142692781 142692852 -39722390 + L2 LINE L2 3238 3310 -3 279 226 20 29 chr6 142692906 142693008 -39722234 + (CATATA)n Simple_repeat Simple_repeat 6 106 0 243 313 25 25 chr6 142694212 142694292 -39720950 + L2 LINE L2 3234 3313 0 352 310 63 6 chr6 142696731 142696974 -39718268 - L1MC4a LINE L1 -217 5947 5689 491 290 18 43 chr6 142697724 142697965 -39717277 - L1MC4a LINE L1 -544 5618 5384 33 25 0 0 chr6 142697969 142698009 -39717233 + AT_rich Low_complexity Low_complexity 1 40 0 387 248 10 0 chr6 142698092 142698195 -39717047 - L1MA10 LINE L1 -68 6098 5998 6057 122 152 25 chr6 142698206 142699340 -39715902 - MER52C LTR ERV1 0 1278 1 539 227 14 7 chr6 142699393 142699534 -39715708 - L1ME1 LINE L1 -303 5863 5722 196 313 157 43 chr6 142700589 142700704 -39714538 + L2 LINE L2 3141 3268 -4 191 388 24 12 chr6 142701064 142701229 -39714013 + L2 LINE L2 2866 3032 -240 284 173 0 39 chr6 142701385 142701437 -39713805 + L2 LINE L2 3185 3234 -79 339 361 69 28 chr6 142702382 142702773 -39712469 - L2 LINE L2 -806 2508 2102 582 301 121 38 chr6 142702834 142703306 -39711936 - MLT1L LTR MaLR 0 615 105 2408 98 0 0 chr6 142703309 142703616 -39711626 - AluSg SINE Alu 0 310 4 1991 101 27 3 chr6 142704269 142704566 -39710676 - L1PA16 LINE L1 -9 6157 5854 386 136 30 0 chr6 142704566 142704632 -39710610 + L1PA16 LINE L1 5781 5848 -318 228 288 96 0 chr6 142704829 142704902 -39710340 + L2 LINE L2 3185 3264 -8 1003 272 123 48 chr6 142705135 142705752 -39709490 - L2 LINE L2 0 3313 2647 404 326 206 33 chr6 142707517 142707885 -39707357 + L3 LINE CR1 215 646 -931 1297 86 0 0 chr6 142707885 142708048 -39707194 - AluSc SINE Alu -146 163 1 943 332 133 24 chr6 142708061 142708818 -39706424 + L3 LINE CR1 665 1504 -73 204 182 0 0 chr6 142710233 142710277 -39704965 + (CA)n Simple_repeat Simple_repeat 2 45 0 2318 92 0 3 chr6 142710333 142710637 -39704605 + AluSg SINE Alu 1 303 -7 229 269 39 48 chr6 142710849 142710953 -39704289 - L2 LINE L2 -18 3295 3193 611 279 39 6 chr6 142711752 142711931 -39703311 + MIR SINE MIR 20 204 -58 1925 136 26 62 chr6 142711960 142712349 -39702893 - THE1C LTR MaLR 0 375 1 317 277 89 0 chr6 142713031 142713132 -39702110 + L2 LINE L2 3192 3301 -12 2492 60 0 25 chr6 142713155 142713471 -39701771 + AluY SINE Alu 1 308 -3 2387 194 47 45 chr6 142713869 142714384 -39700858 - MER77 LTR ERV1 -89 516 1 236 236 179 43 chr6 142714384 142714524 -39700718 - L1MEc LINE L1 -6193 203 45 501 263 127 22 chr6 142715277 142715744 -39699498 - L1MCc LINE L1 -4832 2007 1578 1569 201 98 80 chr6 142715784 142716322 -39698920 - LTR10A LTR ERV1 -61 548 1 215 210 8 25 chr6 142716322 142716441 -39698801 + (TA)n Simple_repeat Simple_repeat 2 118 0 361 306 50 9 chr6 142716448 142716667 -39698575 - L1MCc LINE L1 -4933 1490 1263 1965 265 60 33 chr6 142716912 142718810 -39696432 - L1M1 LINE L1 -1840 5725 3674 840 308 104 10 chr6 142718821 142719207 -39696035 - LTR16A LTR ERVL -12 438 17 1306 277 80 4 chr6 142719227 142719902 -39695340 - L1M1 LINE L1 -4034 3712 2907 2396 70 0 6 chr6 142719961 142720274 -39694968 - AluY SINE Alu 0 311 1 22 35 0 0 chr6 142721969 142721998 -39693244 + AT_rich Low_complexity Low_complexity 1 29 0 1255 195 42 4 chr6 142723528 142723789 -39691453 - MER58B DNA MER1_type -14 327 57 555 261 100 22 chr6 142723954 142724134 -39691108 + MIR SINE MIR 20 213 -49 2357 65 0 0 chr6 142724386 142724679 -39690563 - AluY SINE Alu -18 293 1 1947 134 0 23 chr6 142724898 142725205 -39690037 - AluSx SINE Alu -12 300 1 1236 211 38 4 chr6 142725465 142725726 -39689516 - MER58B DNA MER1_type -46 295 26 345 372 61 30 chr6 142725944 142726175 -39689067 - L2 LINE L2 -6 3266 3029 774 249 101 0 chr6 142728834 142729043 -39686199 + MIR SINE MIR 8 237 -25 251 287 20 30 chr6 142729103 142729204 -39686038 - L3b LINE CR1 -121 1462 1363 568 300 123 7 chr6 142729288 142729522 -39685720 + MIR SINE MIR 3 261 -1 21 0 0 0 chr6 142731326 142731347 -39683895 + AT_rich Low_complexity Low_complexity 1 21 0 318 352 108 23 chr6 142732286 142732462 -39682780 - MIR3 SINE MIR 0 208 18 333 150 100 0 chr6 142732582 142732642 -39682600 - MER3 DNA MER1_type -2 207 142 297 200 100 12 chr6 142732768 142732848 -39682394 + MER3 DNA MER1_type 123 209 0 * 625 198 0 0 chr6 142732848 142732895 -39682347 - MER3 DNA MER1_type -162 47 1 445 223 116 8 chr6 142732903 142733024 -39682218 - MER20 DNA MER1_type 0 219 86 281 115 33 66 chr6 142733068 142733129 -39682113 - MER20 DNA MER1_type -145 74 16 21 36 0 0 chr6 142735166 142735194 -39680048 + AT_rich Low_complexity Low_complexity 1 28 0 273 319 125 38 chr6 142736437 142736597 -39678645 - MIR3 SINE MIR -15 193 20 21 0 0 0 chr6 142737702 142737723 -39677519 + AT_rich Low_complexity Low_complexity 1 21 0 2364 99 0 3 chr6 142737742 142738055 -39677187 - AluSx SINE Alu 0 312 1 347 375 37 7 chr6 142740395 142740531 -39674711 - L2 LINE L2 0 3272 3133 686 356 55 53 chr6 142740802 142741527 -39673715 - L2 LINE L2 -17 3255 2527 899 257 16 22 chr6 142741611 142741858 -39673384 + MIR SINE MIR 11 257 -5 21 0 0 0 chr6 142742414 142742435 -39672807 + AT_rich Low_complexity Low_complexity 1 21 0 2164 222 45 15 chr6 142743695 142744295 -39670947 + L1ME3A LINE L1 4579 5196 -950 * 25776 23 0 0 chr6 142744287 142747364 -39667878 - L1P LINE L1 -795 5351 2276 398 196 39 0 chr6 142747362 142747464 -39667778 + L1ME3A LINE L1 5195 5300 -846 * 265 306 14 0 chr6 142747656 142747728 -39667514 - L2 LINE L2 -7 3306 3234 451 158 58 4 chr6 142748173 142748291 -39666951 - MER96 DNA MER1_type? 0 175 3 461 214 0 0 chr6 142750446 142750530 -39664712 + FRAM/FAM SINE Alu 5 88 -97 5816 141 23 11 chr6 142750533 142751230 -39664012 - L1MA8 LINE L1 -21 6270 5556 2021 126 30 32 chr6 142751230 142751602 -39663640 + THE1C LTR MaLR 1 371 -4 5816 141 23 11 chr6 142751602 142751976 -39663266 - L1MA8 LINE L1 -735 5556 5188 299 262 183 24 chr6 142752044 142752208 -39663034 + MIR SINE MIR 3 192 -70 222 171 0 0 chr6 142752208 142752249 -39662993 + (CA)n Simple_repeat Simple_repeat 2 42 0 1431 197 50 126 chr6 142752271 142752947 -39662295 + L1ME3A LINE L1 5270 5894 -276 32 26 0 0 chr6 142753965 142754004 -39661238 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr6 142754087 142754116 -39661126 + AT_rich Low_complexity Low_complexity 1 29 0 357 332 97 52 chr6 142754318 142754838 -39660404 - L2 LINE L2 -960 2354 1788 891 176 19 166 chr6 142754838 142755212 -39660030 + MER33 DNA MER1_type 5 323 -1 357 332 97 52 chr6 142755212 142755454 -39659788 - L2 LINE L2 -1526 1788 1558 337 320 109 28 chr6 142756702 142756986 -39658256 - MER102b DNA MER1_type -9 332 26 2189 114 3 7 chr6 142758059 142758418 -39656824 - AluSx SINE Alu 0 312 2 249 307 35 26 chr6 142759173 142759287 -39655955 + MARNA DNA Mariner 72 186 -400 * 844 225 107 71 chr6 142759187 142759609 -39655633 - MARNA DNA Mariner -89 497 61 394 309 16 24 chr6 142759830 142759953 -39655289 - MIR SINE MIR -70 138 17 397 290 72 14 chr6 142760308 142760446 -39654796 + MIR SINE MIR 6 151 -111 184 250 0 0 chr6 142760895 142760926 -39654316 - L2 LINE L2 -83 3230 3197 203 77 0 26 chr6 142760926 142760965 -39654277 + (CAAAA)n Simple_repeat Simple_repeat 5 42 0 220 334 34 34 chr6 142761032 142761205 -39654037 - L2 LINE L2 -310 3003 2836 23055 144 32 26 chr6 142761206 142766064 -39649178 + L1MA3 LINE L1 13 4842 -2882 2310 86 0 3 chr6 142766064 142766366 -39648876 + AluY SINE Alu 1 301 -10 23055 144 32 26 chr6 142766366 142768953 -39646289 + L1MA3 LINE L1 4842 7413 -311 1464 176 7 50 chr6 142768953 142769231 -39646011 + AluJo SINE Alu 3 268 -44 23055 144 32 26 chr6 142769231 142769382 -39645860 + L1MA3 LINE L1 7413 7562 -162 2236 111 0 0 chr6 142769382 142769680 -39645562 + AluSx SINE Alu 2 299 -13 23055 144 32 26 chr6 142769680 142769734 -39645508 + L1MA3 LINE L1 7562 7724 0 435 241 0 0 chr6 142769744 142769881 -39645361 + (TA)n Simple_repeat Simple_repeat 2 138 0 294 306 210 11 chr6 142769885 142770071 -39645171 - L2 LINE L2 -480 2834 2612 787 212 50 0 chr6 142770095 142770274 -39644968 - MER5A DNA MER1_type 0 189 2 310 229 148 0 chr6 142770350 142770472 -39644770 - MER103 DNA DNA -4 162 23 200 227 173 9 chr6 142771019 142771129 -39644113 + MIR SINE MIR 77 204 -58 632 277 96 14 chr6 142772626 142772846 -39642396 + MIR SINE MIR 10 247 -15 493 243 197 7 chr6 142774369 142774521 -39640721 - MER5A DNA MER1_type 0 189 9 557 286 23 0 chr6 142774540 142774711 -39640531 - MER5B DNA MER1_type -3 175 1 300 293 107 5 chr6 142775066 142775271 -39639971 + L2 LINE L2 1546 1771 -1543 201 269 92 23 chr6 142775288 142775418 -39639824 + L2 LINE L2 1884 2022 -1292 * 682 313 44 51 chr6 142775399 142775833 -39639409 + L2 LINE L2 2883 3313 0 372 22 0 0 chr6 142776438 142776483 -39638759 + (TC)n Simple_repeat Simple_repeat 2 46 0 2082 146 0 0 chr6 142778318 142778613 -39636629 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 142780434 142780455 -39634787 + AT_rich Low_complexity Low_complexity 1 21 0 252 329 13 13 chr6 142781629 142781708 -39633534 - MIR SINE MIR -168 94 16 4826 62 11 0 chr6 142781776 142782388 -39632854 - L1PA7 LINE L1 0 6154 5536 198 294 65 43 chr6 142785270 142785362 -39629880 - L2 LINE L2 -3 3269 3176 25 31 0 0 chr6 142785703 142785735 -39629507 + AT_rich Low_complexity Low_complexity 1 32 0 47 0 0 0 chr6 142785852 142785899 -39629343 + AT_rich Low_complexity Low_complexity 1 47 0 2296 76 0 33 chr6 142786085 142786389 -39628853 + AluY SINE Alu 1 294 -17 22 35 0 0 chr6 142786835 142786864 -39628378 + AT_rich Low_complexity Low_complexity 1 29 0 272 203 25 42 chr6 142788265 142788383 -39626859 + (TA)n Simple_repeat Simple_repeat 2 117 0 285 225 113 0 chr6 142788383 142788463 -39626779 + L2 LINE L2 3165 3253 -19 234 339 25 33 chr6 142789345 142789466 -39625776 + MER5B DNA MER1_type 59 178 0 * 237 260 250 0 chr6 142789466 142789545 -39625697 + L2 LINE L2 3169 3272 0 381 22 0 0 chr6 142790006 142790052 -39625190 + (TG)n Simple_repeat Simple_repeat 2 47 0 335 328 44 68 chr6 142790311 142790561 -39624681 + L3 LINE CR1 444 687 -890 1410 131 44 0 chr6 142790561 142790790 -39624452 + L1PA13 LINE L1 5923 6161 -2 2215 104 0 41 chr6 142790826 142791142 -39624100 + AluSc SINE Alu 1 303 -6 2951 83 0 10 chr6 142791146 142791530 -39623712 - L1PA13 LINE L1 -242 5921 5540 1830 98 4 0 chr6 142791530 142791789 -39623453 + L1PA13 LINE L1 5899 6163 0 2951 83 0 10 chr6 142791789 142791803 -39623439 - L1PA13 LINE L1 -623 5540 5527 385 292 140 54 chr6 142792017 142792497 -39622745 + L3 LINE CR1 988 1508 -69 397 98 16 0 chr6 142792814 142792875 -39622367 + MADE1 DNA Mariner 19 80 0 21919 26 12 0 chr6 142793101 142795884 -39619358 + L1P1 LINE L1 2698 5515 -640 1290 132 26 0 chr6 142796304 142796494 -39618748 + L1M4c LINE L1 16 210 -6174 6926 209 34 22 chr6 142796496 142796944 -39618298 + L1M4c LINE L1 1458 1899 -4483 2301 109 0 0 chr6 142796944 142797247 -39617995 + AluY SINE Alu 1 303 -8 6926 209 34 22 chr6 142797247 142798403 -39616839 + L1M4c LINE L1 1899 3040 -3342 2290 97 0 10 chr6 142798403 142798713 -39616529 - AluSq SINE Alu -6 307 1 6926 209 34 22 chr6 142798713 142800160 -39615082 + L1M4c LINE L1 3040 4547 -1835 349 305 7 7 chr6 142803097 142803238 -39612004 + (TA)n Simple_repeat Simple_repeat 2 142 0 1159 164 90 68 chr6 142805021 142805332 -39609910 - MER33 DNA MER1_type -2 322 5 790 220 87 5 chr6 142805517 142805735 -39609507 - MER106A DNA MER1_type 0 236 1 203 240 0 20 chr6 142806289 142806339 -39608903 + CT-rich Low_complexity Low_complexity 1 49 0 309 257 96 43 chr6 142810369 142810556 -39604686 + L2 LINE L2 2173 2369 -945 520 296 115 48 chr6 142810560 142811173 -39604069 + L2 LINE L2 2546 3215 -98 1477 164 49 59 chr6 142811219 142811529 -39603713 + AluJb SINE Alu 1 307 0 982 174 0 6 chr6 142811954 142812115 -39603127 - FRAM SINE Alu -20 156 1 316 321 102 65 chr6 142812750 142813357 -39601885 - L2 LINE L2 -89 3183 2542 188 346 12 12 chr6 142813423 142813504 -39601738 - L2 LINE L2 -840 2474 2394 222 323 16 0 chr6 142814931 142814993 -39600249 - MIR SINE MIR -97 111 49 707 86 0 0 chr6 142815704 142815797 -39599445 - AluSc SINE Alu -8 301 209 4270 162 68 12 chr6 142815812 142816753 -39598489 - L1MB3 LINE L1 0 6183 5196 588 307 55 65 chr6 142816816 142817249 -39597993 + MLT1K LTR MaLR 147 575 -13 1579 222 52 78 chr6 142819174 142819727 -39595515 - MLT1F LTR MaLR 0 542 4 211 248 208 20 chr6 142819859 142819960 -39595282 + MIR SINE MIR 88 207 -55 592 151 176 6 chr6 142820571 142820730 -39594512 + MER53 DNA DNA 4 189 0 301 297 31 76 chr6 142820758 142821048 -39594194 - L2 LINE L2 -459 2855 2579 459 310 95 13 chr6 142821156 142821314 -39593928 - MER5B DNA MER1_type -6 172 2 22 35 0 0 chr6 142821501 142821530 -39593712 + AT_rich Low_complexity Low_complexity 1 29 0 1589 185 44 0 chr6 142821530 142821800 -39593442 - AluJo SINE Alu -30 282 1 1780 124 9 41 chr6 142822138 142822453 -39592789 + MER1B DNA MER1_type 35 339 0 225 0 0 0 chr6 142823368 142823393 -39591849 + (TG)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chr6 142823392 142823414 -39591828 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 232 261 0 0 chr6 142823505 142823551 -39591691 - L2 LINE L2 -5 3308 3263 1519 83 0 66 chr6 142824337 142824565 -39590677 - AluY SINE Alu -3 308 96 298 49 0 0 chr6 142825279 142825320 -39589922 + MADE1 DNA Mariner 40 80 0 326 308 77 0 chr6 142826310 142826414 -39588828 - L2 LINE L2 -12 3301 3190 221 232 0 36 chr6 142826512 142826568 -39588674 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 202 224 0 41 chr6 142827743 142827792 -39587450 - L2 LINE L2 -92 3221 3175 223 259 35 0 chr6 142828218 142828276 -39586966 - L2 LINE L2 -5 3308 3249 293 335 21 68 chr6 142828795 142828986 -39586256 - MER5A DNA MER1_type -1 188 7 2443 77 0 13 chr6 142830435 142830748 -39584494 + AluY SINE Alu 1 309 -2 21 0 0 0 chr6 142831028 142831049 -39584193 + AT_rich Low_complexity Low_complexity 1 21 0 224 364 14 36 chr6 142831500 142831529 -39583713 + MER5A DNA MER1_type 2 30 -159 7193 55 10 0 chr6 142831529 142832591 -39582651 - L1PA8 LINE L1 0 6172 5106 224 364 14 36 chr6 142832591 142832701 -39582541 + MER5A DNA MER1_type 30 138 -51 * 487 269 10 0 chr6 142832598 142832702 -39582540 - MER5A DNA MER1_type -23 166 62 2013 120 10 3 chr6 142832726 142833017 -39582225 - AluSx SINE Alu 0 312 20 249 259 0 0 chr6 142833020 142833074 -39582168 - MER5A DNA MER1_type -116 73 20 3100 171 42 70 chr6 142833697 142834069 -39581173 - L1MB3 LINE L1 -2 6181 5800 333 0 0 0 chr6 142834069 142834106 -39581136 + (TG)n Simple_repeat Simple_repeat 2 38 0 3100 171 42 70 chr6 142834106 142834544 -39580698 - L1MB3 LINE L1 -383 5800 5394 1442 76 28 0 chr6 142834544 142834755 -39580487 - MLT2A1 LTR ERVL 0 444 228 28399 72 8 3 chr6 142834755 142835966 -39579276 - HERVL-A1 LTR ERVL -1831 3823 2620 3676 97 12 4 chr6 142835966 142836473 -39578769 - MER9 LTR ERVK 0 511 1 28399 72 8 3 chr6 142836473 142839063 -39576179 - HERVL-A1 LTR ERVL -3034 2620 2 231 188 0 0 chr6 142839079 142839127 -39576115 - MLT2A1 LTR ERVL -7 437 390 210 143 0 0 chr6 142839131 142839166 -39576076 + (TG)n Simple_repeat Simple_repeat 2 36 0 379 235 10 39 chr6 142839187 142839289 -39575953 + L1MC4 LINE L1 6605 6703 -1339 2791 99 2 5 chr6 142839296 142839700 -39575542 - MLT2A1 LTR ERVL -41 403 1 1653 207 24 27 chr6 142839703 142840153 -39575089 - L1MB3 LINE L1 -751 5395 4947 2473 83 3 6 chr6 142840236 142840549 -39574693 - AluSp SINE Alu -1 312 1 2086 90 32 7 chr6 142840562 142840840 -39574402 - AluSc SINE Alu -24 285 1 285 29 0 0 chr6 142841260 142841294 -39573948 + (CAT)n Simple_repeat Simple_repeat 1 34 0 192 321 71 0 chr6 142841295 142841379 -39573863 - MIR SINE MIR -14 248 159 30 45 0 0 chr6 142841797 142841841 -39573401 + AT_rich Low_complexity Low_complexity 1 44 0 270 262 131 0 chr6 142842042 142842149 -39573093 + L1ME4a LINE L1 5970 6090 -31 427 296 70 27 chr6 142842968 142843154 -39572088 + L1MC5 LINE L1 7732 7925 -36 265 328 8 74 chr6 142844379 142844501 -39570741 - L2 LINE L2 0 3272 3159 21 0 0 0 chr6 142844627 142844648 -39570594 + AT_rich Low_complexity Low_complexity 1 21 0 216 274 0 0 chr6 142845906 142845957 -39569285 + L2 LINE L2 3251 3301 -12 2026 105 3 57 chr6 142846088 142846402 -39568840 + AluSx SINE Alu 2 298 -14 31 68 0 0 chr6 142847783 142847842 -39567400 + AT_rich Low_complexity Low_complexity 1 59 0 374 330 89 16 chr6 142848170 142848449 -39566793 + L1M4 LINE L1 5336 5634 -550 2244 103 26 29 chr6 142850064 142850376 -39564866 + AluSx SINE Alu 1 311 -1 238 194 0 0 chr6 142850441 142850503 -39564739 + L1M4 LINE L1 4975 5036 -1110 2445 40 10 7 chr6 142851049 142851350 -39563892 + AluY SINE Alu 1 302 -9 1919 217 126 23 chr6 142851465 142851827 -39563415 + L1MDa LINE L1 17 340 -6200 408 20 0 0 chr6 142851827 142851876 -39563366 + (CA)n Simple_repeat Simple_repeat 1 49 0 1919 217 126 23 chr6 142851876 142852402 -39562840 + L1MDa LINE L1 340 1331 -5209 894 47 16 8 chr6 142852418 142852547 -39562695 + (GAA)n Simple_repeat Simple_repeat 2 131 0 1135 204 79 8 chr6 142852550 142852790 -39562452 + AluJb SINE Alu 30 286 -26 1070 174 10 19 chr6 142852790 142853098 -39562144 + L1MD1 LINE L1 5898 6236 -6 766 289 30 18 chr6 142853145 142853481 -39561761 + L1MB3 LINE L1 3350 3689 -2457 1680 163 87 36 chr6 142853563 142853920 -39561322 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr6 142854738 142854768 -39560474 + AT_rich Low_complexity Low_complexity 1 30 0 4312 194 42 4 chr6 142854874 142856542 -39558700 + L1MB3 LINE L1 4442 6175 -8 25 0 0 0 chr6 142856652 142856677 -39558565 + AT_rich Low_complexity Low_complexity 1 25 0 460 306 40 12 chr6 142857677 142857850 -39557392 + L2 LINE L2 2584 2761 -553 1608 168 37 74 chr6 142858101 142858506 -39556736 + MLT1B LTR MaLR 1 390 0 332 278 65 92 chr6 142858806 142859078 -39556164 - MLT1J LTR MaLR -200 311 1 22 0 0 0 chr6 142859574 142859596 -39555646 + AT_rich Low_complexity Low_complexity 1 22 0 728 294 88 18 chr6 142861037 142861265 -39553977 - MIR SINE MIR 0 262 19 593 231 60 97 chr6 142861424 142861470 -39553772 - MIR SINE MIR -1 261 215 2681 45 0 0 chr6 142861470 142861780 -39553462 - AluY SINE Alu -1 310 1 593 231 60 97 chr6 142861780 142862001 -39553241 - MIR SINE MIR -47 215 4 2190 122 0 3 chr6 142862102 142862406 -39552836 + AluSx SINE Alu 1 303 -9 1244 142 0 13 chr6 142862421 142862654 -39552588 - L1MB4 LINE L1 -295 5885 5656 205 237 0 0 chr6 142862654 142862692 -39552550 + (CA)n Simple_repeat Simple_repeat 2 39 0 191 349 46 88 chr6 142862709 142862947 -39552295 - L2 LINE L2 -67 3205 2978 1441 196 107 77 chr6 142863054 142863558 -39551684 + MLT2B1 LTR ERVL 1 519 -1 188 329 13 40 chr6 142863959 142864035 -39551207 + L2 LINE L2 3203 3276 -37 222 37 0 0 chr6 142864035 142864062 -39551180 + (GA)n Simple_repeat Simple_repeat 1 27 0 226 204 0 0 chr6 142864184 142864228 -39551014 + MLT1K LTR MaLR 545 588 0 21 36 0 0 chr6 142864695 142864723 -39550519 + AT_rich Low_complexity Low_complexity 1 28 0 199 195 0 24 chr6 142865593 142865634 -39549608 - MIR SINE MIR -146 62 23 564 313 94 33 chr6 142868767 142869247 -39545995 - L1 LINE L1 -1623 4523 4015 754 191 76 99 chr6 142869270 142869485 -39545757 - L1MC5 LINE L1 -219 7742 7540 2581 51 0 0 chr6 142869485 142869781 -39545461 - AluY SINE Alu -15 296 1 754 191 76 99 chr6 142869781 142869988 -39545254 - L1MC5 LINE L1 -421 7540 7330 285 75 0 0 chr6 142869990 142870030 -39545212 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 245 143 143 0 chr6 142870088 142870151 -39545091 - L1MC5 LINE L1 -747 7214 7143 1475 182 32 62 chr6 142870154 142870527 -39544715 + MLT1A1 LTR MaLR 4 365 0 634 221 23 17 chr6 142870583 142870755 -39544487 - Charlie1a DNA MER1_type -1030 425 253 1726 168 0 31 chr6 142870817 142871108 -39544134 + AluJo SINE Alu 12 293 -19 836 252 39 12 chr6 142871133 142871391 -39543851 - Charlie1a DNA MER1_type -1185 270 6 184 333 58 37 chr6 142871577 142871766 -39543476 + L2 LINE L2 3113 3305 -8 2673 101 16 3 chr6 142871766 142872152 -39543090 - MLT2A2 LTR ERVL -62 391 1 23 86 0 0 chr6 142872862 142872920 -39542322 + AT_rich Low_complexity Low_complexity 1 58 0 1539 186 14 14 chr6 142873862 142874152 -39541090 - AluSx SINE Alu -22 290 1 1746 168 114 8 chr6 142874347 142874705 -39540537 - MSTD LTR MaLR 0 396 1 181 73 24 49 chr6 142874963 142875004 -39540238 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 297 294 128 0 chr6 142875407 142875516 -39539726 - L2 LINE L2 0 3313 3191 236 337 215 0 chr6 142875613 142875818 -39539424 - MIR SINE MIR -10 252 4 1100 173 82 141 chr6 142876151 142876591 -39538651 - MLT2D LTR ERVL 0 414 1 256 193 0 9 chr6 142876706 142876774 -39538468 - MLT2C2 LTR ERVL 0 464 417 2245 190 39 43 chr6 142876800 142877317 -39537925 - MLT2B3 LTR ERVL -39 515 1 234 222 26 60 chr6 142877344 142877461 -39537781 + L1MC/D LINE L1 5320 5432 -732 5058 126 36 7 chr6 142877566 142878759 -39536483 - L1PA15 LINE L1 0 6165 4934 328 269 69 69 chr6 142878833 142879008 -39536234 + L1MC/D LINE L1 5633 5807 -2001 1362 165 0 22 chr6 142879079 142879303 -39535939 - AluJb SINE Alu -93 219 1 21 0 0 0 chr6 142879321 142879342 -39535900 + AT_rich Low_complexity Low_complexity 1 21 0 2073 97 48 3 chr6 142880274 142880563 -39534679 + AluSx SINE Alu 1 302 -10 839 181 79 11 chr6 142880724 142880901 -39534341 + MER5A DNA MER1_type 1 189 0 258 244 0 24 chr6 142881082 142881164 -39534078 + (TA)n Simple_repeat Simple_repeat 1 80 0 1323 151 46 0 chr6 142881164 142881403 -39533839 - Tigger2 DNA MER2_type 0 2718 2469 3929 141 32 30 chr6 142881476 142882219 -39533023 - Tigger2 DNA MER2_type -1973 745 1 2535 263 121 97 chr6 142882353 142883366 -39531876 + L2 LINE L2 1292 2280 -1033 370 145 0 16 chr6 142883366 142883428 -39531814 - MER90 LTR ERV1 -547 67 7 2535 263 121 97 chr6 142883428 142884323 -39530919 + L2 LINE L2 2280 3308 -5 241 322 52 17 chr6 142884519 142884634 -39530608 + MIR SINE MIR 28 146 -62 272 302 82 38 chr6 142886729 142886888 -39528354 - MIR3 SINE MIR 0 208 43 296 295 11 53 chr6 142886922 142887017 -39528225 + L2 LINE L2 3223 3313 0 11473 122 24 54 chr6 142887080 142889850 -39525392 + L1PA7 LINE L1 1 2776 -3685 248 47 0 70 chr6 142890041 142890067 -39525175 + (A)n Simple_repeat Simple_repeat 1 24 -16 20489 100 11 5 chr6 142890067 142893874 -39521368 + L1PA7 LINE L1 2625 6466 -3 248 47 0 70 chr6 142893874 142893890 -39521352 + (A)n Simple_repeat Simple_repeat 24 40 0 1786 184 3 3 chr6 142894330 142894624 -39520618 - AluJb SINE Alu -18 294 1 289 238 0 114 chr6 142895847 142895952 -39519290 + MIR SINE MIR 97 189 -73 243 0 0 0 chr6 142896388 142896415 -39518827 + (T)n Simple_repeat Simple_repeat 1 27 0 198 118 0 0 chr6 142897172 142897206 -39518036 + (TG)n Simple_repeat Simple_repeat 1 34 0 313 279 4 128 chr6 142897614 142897840 -39517402 + MLT1J LTR MaLR 110 307 -204 189 401 87 38 chr6 142898492 142898836 -39516406 + L2 LINE L2 2907 3267 -5 1578 163 9 59 chr6 142900128 142900448 -39514794 - AluJb SINE Alu -8 304 1 244 301 48 0 chr6 142900691 142900774 -39514468 + MIR SINE MIR 95 181 -81 378 73 0 0 chr6 142900775 142900830 -39514412 - MLT2A2 LTR ERVL 0 453 399 310 234 0 0 chr6 142900831 142900895 -39514347 + L1MC4 LINE L1 6640 6703 -1339 * 321 305 0 29 chr6 142900855 142900960 -39514282 - L1MC4 LINE L1 -1339 6703 6602 575 206 0 24 chr6 142900995 142901121 -39514121 - MSTC LTR MaLR -298 130 8 8436 193 99 8 chr6 142901130 142903005 -39512237 + ERVL-C1 LTR ERVL 3711 5756 -8 1310 224 19 51 chr6 142903005 142903415 -39511827 + MLT2C1 LTR ERVL 1 397 0 188 86 29 0 chr6 142903420 142903455 -39511787 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 238 298 0 0 chr6 142904024 142904081 -39511161 - L2 LINE L2 0 3272 3216 205 329 0 24 chr6 142904950 142905035 -39510207 + A-rich Low_complexity Low_complexity 5 87 0 691 242 117 33 chr6 142905041 142905281 -39509961 - MIR SINE MIR 0 262 3 264 301 70 129 chr6 142906814 142907116 -39508126 - L2 LINE L2 -6 3266 2983 420 320 141 40 chr6 142907502 142907927 -39507315 - L2 LINE L2 -560 2754 2287 34 0 0 22 chr6 142910869 142910894 -39504348 + AT_rich Low_complexity Low_complexity 1 26 -18 1742 164 10 20 chr6 142910894 142911186 -39504056 - AluJo SINE Alu -23 289 1 34 0 0 22 chr6 142911186 142911205 -39504037 + AT_rich Low_complexity Low_complexity 26 44 0 401 286 54 60 chr6 142911485 142911670 -39503572 - MIR3 SINE MIR -11 197 14 2139 56 15 8 chr6 142912256 142912524 -39502718 + AluY SINE Alu 1 270 -41 1033 185 0 63 chr6 142913398 142913636 -39501606 - AluJo SINE Alu -5 307 85 417 39 0 0 chr6 142914354 142914405 -39500837 + (CA)n Simple_repeat Simple_repeat 2 52 0 1361 151 97 36 chr6 142914540 142914819 -39500423 - MSTA LTR MaLR -132 296 1 4437 88 3 48 chr6 142914819 142915467 -39499775 + L1PA14 LINE L1 5541 6159 -2 327 272 33 33 chr6 142915470 142915562 -39499680 - MIR SINE MIR -148 114 23 796 202 16 48 chr6 142915792 142915980 -39499262 + MLT1H LTR MaLR 1 182 -367 339 261 117 31 chr6 142916038 142916260 -39498982 + MLT1H LTR MaLR 286 526 -23 1264 204 34 19 chr6 142916576 142916841 -39498401 + ORSL DNA AcHobo 4 272 -3 279 0 0 0 chr6 142916930 142916961 -39498281 + (TG)n Simple_repeat Simple_repeat 1 31 0 291 309 0 11 chr6 142917087 142917181 -39498061 - MIR SINE MIR -72 136 44 491 309 18 69 chr6 142917772 142917989 -39497253 + MIR SINE MIR 51 256 -6 187 265 88 29 chr6 142918001 142918069 -39497173 + MIR SINE MIR 108 179 -83 3262 71 4 98 chr6 142918501 142918991 -39496251 + MLT2A1 LTR ERVL 1 444 0 301 100 0 0 chr6 142918991 142919031 -39496211 + HERVL-A1 LTR ERVL 1 40 -5614 12809 27 0 0 chr6 142919031 142920525 -39494717 + L1P LINE L1 2905 4398 -1748 275 217 133 0 chr6 142920633 142920716 -39494526 + HsTC2 DNA Tc2 1805 1898 0 13632 72 7 3 chr6 142921172 142922903 -39492339 + HERVL LTR ERVL 25 1762 -3892 1369 71 6 0 chr6 142922900 142923070 -39492172 + HERVL LTR ERVL 3544 3714 -1940 * 27679 76 5 9 chr6 142923061 142926591 -39488651 + HERVL LTR ERVL 1758 5274 -380 429 164 66 86 chr6 142927018 142927170 -39488072 + MER53 DNA DNA 39 187 -2 1850 165 7 7 chr6 142927762 142928053 -39487189 + AluJo SINE Alu 1 291 -21 673 342 92 33 chr6 142928664 142928944 -39486298 + L1M4 LINE L1 3954 4216 -1930 2029 155 21 37 chr6 142928944 142929325 -39485917 + THE1C LTR MaLR 1 375 0 2560 99 33 36 chr6 142929327 142929692 -39485550 + THE1B LTR MaLR 1 364 0 673 342 92 33 chr6 142929692 142930128 -39485114 + L1M4 LINE L1 4216 4715 -1431 4154 203 11 19 chr6 142930209 142931132 -39484110 + L1PA16 LINE L1 4404 5318 -828 823 148 0 0 chr6 142931132 142931260 -39483982 + AluSc SINE Alu 182 309 0 21 36 0 0 chr6 142931556 142931584 -39483658 + GC_rich Low_complexity Low_complexity 1 28 0 2773 74 22 73 chr6 142931635 142932506 -39482736 + SVA Other Other 393 868 -592 6977 58 6 42 chr6 142932519 142933508 -39481734 + SVA Other Other 433 1386 0 5128 128 30 14 chr6 142933511 142934348 -39480894 + L1PA16 LINE L1 5317 6166 0 490 268 127 40 chr6 142934489 142934788 -39480454 - LTR16C LTR ERVL 0 491 167 1249 153 5 10 chr6 142935541 142935743 -39479499 + L1PA15 LINE L1 5958 6158 -7 1652 168 4 0 chr6 142936020 142936288 -39478954 - AluSx SINE Alu -12 300 32 951 297 58 25 chr6 142936300 142936697 -39478545 + LTR16A LTR ERVL 27 436 -14 2194 95 7 0 chr6 142936988 142937272 -39477970 - AluSg SINE Alu -24 286 1 21 36 0 0 chr6 142937448 142937476 -39477766 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr6 142938462 142938512 -39476730 + AT_rich Low_complexity Low_complexity 1 50 0 2554 146 28 21 chr6 142938628 142939053 -39476189 - MSTA LTR MaLR 0 428 1 398 295 23 28 chr6 142939629 142939794 -39475448 + MIR SINE MIR 7 174 -34 301 288 81 18 chr6 142939783 142939894 -39475348 + L2 LINE L2 3196 3313 0 * 200 230 180 20 chr6 142939879 142939979 -39475263 + MIR SINE MIR 141 256 -6 * 23 33 0 0 chr6 142942064 142942094 -39473148 + AT_rich Low_complexity Low_complexity 1 30 0 543 127 0 0 chr6 142942924 142943016 -39472226 - AluY SINE Alu 0 307 216 2025 61 0 4 chr6 142943016 142943262 -39471980 - AluY SINE Alu -66 245 1 377 174 314 25 chr6 142943315 142943328 -39471914 - L1MA10 LINE L1 -1 6333 6321 2311 221 93 40 chr6 142943328 142944024 -39471218 - L1ME1 LINE L1 -5 6161 5429 2198 238 54 17 chr6 142944873 142945555 -39469687 - L1ME1 LINE L1 -745 5401 4730 1936 65 0 148 chr6 142945567 142945918 -39469324 + AluY SINE Alu 1 299 -12 27 0 0 0 chr6 142945918 142945945 -39469297 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr6 142946497 142946536 -39468706 + AT_rich Low_complexity Low_complexity 1 39 0 250 236 13 13 chr6 142946853 142947011 -39468231 + GA-rich Low_complexity Low_complexity 1 158 0 555 302 142 39 chr6 142947039 142947629 -39467613 + L1MC4a LINE L1 5270 5920 -1888 1823 162 0 7 chr6 142948420 142948710 -39466532 - AluJb SINE Alu -24 288 1 2313 112 0 0 chr6 142949612 142949916 -39465326 - AluSq SINE Alu -9 304 1 221 328 52 17 chr6 142949932 142950048 -39465194 + L3 LINE CR1 1426 1545 -32 24 0 0 0 chr6 142951643 142951667 -39463575 + AT_rich Low_complexity Low_complexity 1 24 0 364 317 59 11 chr6 142951684 142951870 -39463372 + MIR SINE MIR 63 257 -5 37 39 0 0 chr6 142952134 142952185 -39463057 + AT_rich Low_complexity Low_complexity 1 51 0 516 242 141 35 chr6 142952287 142952655 -39462587 + L1M4 LINE L1 4996 5402 -744 194 0 39 0 chr6 142953128 142953154 -39462088 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 340 212 98 95 chr6 142953299 142953658 -39461584 + L1MEc LINE L1 790 1120 -5085 258 260 99 81 chr6 142953655 142953878 -39461364 - L1M4 LINE L1 -3775 2371 2145 * 2345 153 26 0 chr6 142953938 142954290 -39460952 + THE1B LTR MaLR 1 361 -3 27 0 0 0 chr6 142954414 142954441 -39460801 + AT_rich Low_complexity Low_complexity 1 27 0 393 352 52 26 chr6 142955867 142956097 -39459145 - LTR16C LTR ERVL 0 491 256 362 320 88 35 chr6 142956528 142956756 -39458486 - ERVL LTR ERVL -420 5344 5105 425 324 104 6 chr6 142956825 142956998 -39458244 - ERVL LTR ERVL -743 5021 4832 2526 179 31 29 chr6 142957010 142957495 -39457747 - MER66B LTR ERV1 0 486 1 958 338 29 41 chr6 142957928 142958444 -39456798 - ERVL LTR ERVL -2286 3368 2860 2117 112 26 3 chr6 142958444 142958748 -39456494 + AluY SINE Alu 1 311 0 958 338 29 41 chr6 142958748 142958896 -39456346 - ERVL LTR ERVL -2794 2860 2712 2311 93 54 25 chr6 142959052 142959406 -39455836 + THE1B LTR MaLR 1 364 0 22 70 0 0 chr6 142959540 142959583 -39455659 + AT_rich Low_complexity Low_complexity 1 43 0 1543 173 50 7 chr6 142959646 142959923 -39455319 + AluJo SINE Alu 1 289 -23 357 24 0 0 chr6 142959927 142959969 -39455273 + (CA)n Simple_repeat Simple_repeat 2 43 0 2387 234 84 52 chr6 142960753 142961695 -39453547 - L1ME3A LINE L1 -8 6162 5195 7361 213 35 50 chr6 142961710 142963838 -39451404 - L1MC4a LINE L1 0 7808 5713 614 232 96 30 chr6 142963843 142964041 -39451201 - L1MC4a LINE L1 -2260 5548 5338 409 91 0 26 chr6 142964238 142964315 -39450927 + AluSp/q SINE Alu 239 313 0 26 30 0 0 chr6 142964409 142964442 -39450800 + AT_rich Low_complexity Low_complexity 1 33 0 1014 213 64 96 chr6 142964453 142965017 -39450225 + L1MC5 LINE L1 6643 7140 -821 1302 222 78 38 chr6 142965051 142965447 -39449795 + L1MCb LINE L1 2 413 -5632 983 118 112 0 chr6 142965442 142965620 -39449622 + L1MC3 LINE L1 7337 7534 -251 * 1417 203 17 23 chr6 142965620 142965921 -39449321 + MLT1A2 LTR MaLR 1 299 -75 2384 141 68 25 chr6 142965924 142966365 -39448877 + LOR1b LTR ERV1 2 461 0 728 168 177 38 chr6 142966391 142966600 -39448642 + L1MC3 LINE L1 7541 7778 -7 722 201 81 103 chr6 142966612 142966820 -39448422 + L1MC5 LINE L1 7135 7333 -628 1739 157 3 52 chr6 142966820 142967145 -39448097 + AluJo SINE Alu 1 309 -3 722 201 81 103 chr6 142967145 142967305 -39447937 + L1MC5 LINE L1 7333 7495 -466 230 313 201 28 chr6 142967376 142967520 -39447722 + LTR67 LTR ERVL 13 181 -376 620 254 62 10 chr6 142967786 142967995 -39447247 + L2 LINE L2 69 288 -3026 223 322 34 17 chr6 142968036 142968154 -39447088 + L2 LINE L2 2991 3110 -203 257 61 0 0 chr6 142968155 142968188 -39447054 + MLT2B1 LTR ERVL 1 33 -487 279 255 0 168 chr6 142968216 142968424 -39446818 + L2 LINE L2 3103 3275 -38 349 250 8 62 chr6 142968427 142968555 -39446687 + LTR67 LTR ERVL 424 544 -13 587 283 108 26 chr6 142969698 142969921 -39445321 - L1ME3A LINE L1 -231 5939 5736 2173 121 32 27 chr6 142969921 142970293 -39444949 - THE1C LTR MaLR -1 374 1 587 283 108 26 chr6 142970293 142970486 -39444756 - L1ME3A LINE L1 -434 5736 5489 1739 144 3 50 chr6 142970650 142970812 -39444430 - AluJo SINE Alu -17 295 152 2411 62 3 10 chr6 142970812 142971117 -39444125 - AluY SINE Alu -8 303 1 1739 144 3 50 chr6 142971117 142971253 -39443989 - AluJo SINE Alu -160 152 11 360 0 0 0 chr6 142971583 142971623 -39443619 + (TG)n Simple_repeat Simple_repeat 2 41 0 205 250 23 0 chr6 142972639 142972683 -39442559 - L3 LINE CR1 -9 1568 1524 547 191 17 17 chr6 142972922 142973037 -39442205 + Charlie1 DNA MER1_type 2647 2761 0 409 204 34 11 chr6 142973088 142973176 -39442066 + MER7A DNA MER2_type 1 88 -258 1313 212 107 22 chr6 142973494 142973857 -39441385 + MSTD LTR MaLR 1 394 -2 310 291 63 34 chr6 142974213 142974388 -39440854 + MIR SINE MIR 83 262 0 241 290 28 19 chr6 142974749 142974856 -39440386 + MLT2E LTR ERVL 38 145 -483 21 57 0 0 chr6 142975911 142975946 -39439296 + AT_rich Low_complexity Low_complexity 1 35 0 261 324 68 0 chr6 142976043 142976117 -39439125 + MIR SINE MIR 38 116 -92 5704 111 11 0 chr6 142976166 142977369 -39437873 - L1PA14 LINE L1 -1 6160 4936 201 337 130 0 chr6 142977580 142977672 -39437570 + L2 LINE L2 3210 3313 0 2363 105 35 22 chr6 142977964 142978334 -39436908 - THE1C LTR MaLR 0 375 1 33 66 0 0 chr6 142978426 142978487 -39436755 + AT_rich Low_complexity Low_complexity 1 61 0 2192 183 26 20 chr6 142978661 142979151 -39436091 - L1MA9 LINE L1 -9 6162 5789 310 125 0 31 chr6 142979180 142979244 -39435998 + (TA)n Simple_repeat Simple_repeat 1 62 0 2795 156 37 11 chr6 142979293 142979887 -39435355 - L1MA9 LINE L1 -517 5795 5188 22 35 0 0 chr6 142981161 142981190 -39434052 + AT_rich Low_complexity Low_complexity 1 29 0 501 250 96 42 chr6 142981760 142982000 -39433242 + MER112 DNA MER1_type 8 260 0 1745 183 86 93 chr6 142982673 142983176 -39432066 - MLT1D LTR MaLR 0 505 7 1094 255 68 20 chr6 142983181 142983522 -39431720 + L1ME1 LINE L1 2672 3042 -3104 1923 185 32 61 chr6 142983522 142983997 -39431245 - MER65C LTR ERV1 0 461 1 1094 255 68 20 chr6 142983997 142984114 -39431128 + L1ME1 LINE L1 3042 3152 -2994 428 207 7 59 chr6 142984280 142984415 -39430827 + L1ME1 LINE L1 4659 4786 -1360 2695 85 14 0 chr6 142984532 142984898 -39430344 + L1PA13 LINE L1 5788 6158 -5 209 108 27 0 chr6 142984977 142985014 -39430228 + (TA)n Simple_repeat Simple_repeat 1 38 0 1248 244 36 5 chr6 142985028 142985414 -39429828 + L1ME1 LINE L1 4836 5233 -913 591 186 71 7 chr6 142985509 142985649 -39429593 - MER53 DNA DNA -40 149 1 1869 247 39 48 chr6 142985651 142986398 -39428844 + L1ME1 LINE L1 5243 6161 -5 1329 188 68 41 chr6 142986530 142986822 -39428420 + AluJo SINE Alu 4 303 -9 2450 284 124 25 chr6 142986909 142988146 -39427096 + L2 LINE L2 1946 3313 0 475 324 107 15 chr6 142988206 142988478 -39426764 + L1M4 LINE L1 2234 2530 -3616 1614 281 21 17 chr6 142988902 142989322 -39425920 - MLT2E LTR ERVL -206 422 1 192 40 0 0 chr6 142989438 142989463 -39425779 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 667 290 91 44 chr6 142989463 142989567 -39425675 + L1M4 LINE L1 4495 4593 -1699 1914 150 134 11 chr6 142989567 142989947 -39425295 - MSTA LTR MaLR -1 427 1 667 290 91 44 chr6 142989947 142990752 -39424490 + L1M4 LINE L1 4593 5447 -845 241 241 0 0 chr6 142990846 142990904 -39424338 + L1M4 LINE L1 5618 5675 -499 2278 105 0 0 chr6 142991095 142991390 -39423852 - AluSg SINE Alu -15 295 1 1966 108 24 3 chr6 142991393 142991680 -39423562 - AluSx SINE Alu -19 293 1 332 179 39 0 chr6 142991770 142991848 -39423394 + L1MA7 LINE L1 6211 6291 0 3342 145 3 3 chr6 142992870 142993437 -39421805 + L1 LINE L1 4493 5059 -1087 1114 252 84 18 chr6 142993447 142994008 -39421234 - L1ME LINE L1 -4747 1793 1165 360 286 98 80 chr6 142994008 142994407 -39420835 + L1M3d LINE L1 1 406 -5485 722 264 31 24 chr6 142994558 142994812 -39420430 + L1M3d LINE L1 676 931 -4960 * 2389 247 45 51 chr6 142994797 142995558 -39419684 - L1ME LINE L1 -5314 1216 461 198 320 188 8 chr6 142997066 142997194 -39418048 - L2 LINE L2 0 3313 3163 753 328 107 54 chr6 142997324 142998274 -39416968 - L2 LINE L2 -405 2909 1909 363 78 0 0 chr6 142998881 142998932 -39416310 + (CA)n Simple_repeat Simple_repeat 2 52 0 240 35 0 0 chr6 142998979 142999008 -39416234 + (CA)n Simple_repeat Simple_repeat 2 30 0 225 387 63 14 chr6 142999081 142999223 -39416019 + L2 LINE L2 3116 3264 -8 8095 176 33 46 chr6 142999581 143001419 -39413823 + L1MB2 LINE L1 3455 5316 -855 2456 180 45 6 chr6 143001419 143001909 -39413333 + L1MC1 LINE L1 5807 6315 -18 8095 176 33 46 chr6 143001909 143002746 -39412496 + L1MB2 LINE L1 5316 6123 -48 405 39 0 0 chr6 143002746 143002797 -39412445 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 8095 176 33 46 chr6 143002797 143002845 -39412397 + L1MB2 LINE L1 6123 6170 -1 692 259 94 47 chr6 143002935 143003232 -39412010 + L2 LINE L2 3003 3313 0 399 289 119 14 chr6 143003821 143004017 -39411225 + MIR SINE MIR 37 252 -10 22 35 0 0 chr6 143004091 143004120 -39411122 + AT_rich Low_complexity Low_complexity 1 29 0 1757 135 53 89 chr6 143005519 143005955 -39409287 + L1MA9 LINE L1 5870 6289 -23 213 250 44 29 chr6 143006168 143006236 -39409006 + L2 LINE L2 3244 3312 -1 949 253 9 22 chr6 143006363 143006592 -39408650 + MIR SINE MIR 2 227 -35 1703 152 58 28 chr6 143007373 143007734 -39407508 - THE1C LTR MaLR -3 372 1 207 0 0 0 chr6 143009080 143009103 -39406139 + (CA)n Simple_repeat Simple_repeat 2 24 0 284 152 30 30 chr6 143009313 143009379 -39405863 + MER2 DNA MER2_type 146 211 -134 2341 82 7 0 chr6 143009814 143010119 -39405123 + AluY SINE Alu 1 307 -4 988 218 123 19 chr6 143010370 143010678 -39404564 - MER2 DNA MER2_type -3 341 2 183 276 0 0 chr6 143010706 143010782 -39404460 + (TA)n Simple_repeat Simple_repeat 2 77 0 850 259 17 9 chr6 143011096 143011328 -39403914 - MLT2F LTR ERVL -429 234 1 240 240 27 13 chr6 143011384 143011459 -39403783 + L1ME4a LINE L1 5083 5158 -988 2084 86 0 7 chr6 143011553 143011831 -39403411 - AluY SINE Alu 0 311 36 1160 219 78 11 chr6 143011890 143012173 -39403069 - AluJo SINE Alu 0 302 1 373 243 86 28 chr6 143012458 143012639 -39402603 + L1ME4a LINE L1 5644 5831 -290 21 0 0 0 chr6 143012663 143012684 -39402558 + AT_rich Low_complexity Low_complexity 1 21 0 198 333 53 26 chr6 143012981 143013095 -39402147 - L2 LINE L2 -189 3083 2967 2407 65 7 3 chr6 143013319 143013629 -39401613 - AluY SINE Alu 0 311 1 2200 90 0 10 chr6 143014173 143014473 -39400769 - AluSc SINE Alu -12 297 1 3408 125 33 4 chr6 143016615 143017127 -39398115 - MER1A DNA MER1_type 0 527 1 181 356 27 0 chr6 143017466 143017539 -39397703 + MIR3 SINE MIR 85 159 -49 963 259 84 73 chr6 143017571 143018115 -39397127 + MER20B DNA MER1_type 43 598 -185 3903 65 13 76 chr6 143018115 143018731 -39396511 + L1PA8 LINE L1 5596 6172 0 963 259 84 73 chr6 143018731 143018913 -39396329 + MER20B DNA MER1_type 598 777 -6 485 309 210 58 chr6 143025532 143026251 -39388991 - L3 LINE CR1 -2 1575 748 252 267 56 0 chr6 143026322 143026412 -39388830 - L3b LINE CR1 -163 1420 1326 208 0 30 30 chr6 143026729 143026762 -39388480 + (AAATG)n Simple_repeat Simple_repeat 3 35 0 28 0 0 0 chr6 143027307 143027335 -39387907 + AT_rich Low_complexity Low_complexity 1 28 0 759 165 8 0 chr6 143027336 143027457 -39387785 - FLAM_C SINE Alu -11 122 1 683 209 58 6 chr6 143028102 143028274 -39386968 + MER53 DNA DNA 6 186 -3 23 33 0 0 chr6 143029766 143029796 -39385446 + AT_rich Low_complexity Low_complexity 1 30 0 405 310 54 8 chr6 143030409 143030538 -39384704 + L2 LINE L2 3133 3267 -5 377 188 12 0 chr6 143031859 143031944 -39383298 + GA-rich Low_complexity Low_complexity 4 89 0 191 297 99 22 chr6 143032378 143032469 -39382773 - L2 LINE L2 -14 3299 3202 636 176 6 75 chr6 143032667 143032826 -39382416 + L1PA16 LINE L1 6016 6163 -3 427 268 71 42 chr6 143032980 143033148 -39382094 - MIR SINE MIR -12 250 78 231 322 29 143 chr6 143033422 143033807 -39381435 - L2 LINE L2 0 3272 2932 631 332 78 61 chr6 143034213 143035031 -39380211 + L2 LINE L2 2429 3268 -4 2350 60 0 0 chr6 143035352 143035633 -39379609 + AluY SINE Alu 28 308 -3 25 0 0 0 chr6 143036574 143036599 -39378643 + AT_rich Low_complexity Low_complexity 1 25 0 187 324 80 40 chr6 143037074 143037250 -39377992 + MIR3 SINE MIR 19 201 -7 456 259 36 0 chr6 143038026 143038138 -39377104 - L2 LINE L2 -5 3308 3193 402 275 109 0 chr6 143038142 143038289 -39376953 + MIR SINE MIR 98 259 -3 231 366 138 32 chr6 143038535 143038942 -39376300 - L2 LINE L2 -536 2778 2329 251 315 111 12 chr6 143038982 143039144 -39376098 - L2 LINE L2 -1192 2122 1945 196 343 7 50 chr6 143039179 143039319 -39375923 - L2 LINE L2 -2880 434 301 213 121 0 0 chr6 143039927 143039960 -39375282 + (A)n Simple_repeat Simple_repeat 1 33 0 1064 240 76 91 chr6 143040323 143040886 -39374356 + MLT1H1 LTR MaLR 1 555 0 347 293 48 24 chr6 143041061 143041228 -39374014 + MLT1H1-int LTR MaLR 292 462 -909 248 365 115 21 chr6 143041625 143041817 -39373425 + MLT1H1-int LTR MaLR 694 903 -468 252 260 35 158 chr6 143042016 143042358 -39372884 + MLT1H1-int LTR MaLR 1072 1371 0 807 269 144 28 chr6 143042361 143042825 -39372417 + MLT1H1 LTR MaLR 7 579 -16 230 319 17 8 chr6 143043156 143043275 -39371967 + (TATG)n Simple_repeat Simple_repeat 4 123 0 36 0 0 0 chr6 143044867 143044903 -39370339 + AT_rich Low_complexity Low_complexity 1 36 0 2016 138 7 0 chr6 143045240 143045538 -39369704 - AluSx SINE Alu -12 300 1 415 272 32 19 chr6 143048189 143048347 -39366895 + GA-rich Low_complexity Low_complexity 6 165 0 2462 148 57 18 chr6 143048552 143049051 -39366191 - L1 LINE L1 -2706 3440 2915 2137 101 54 0 chr6 143049051 143049348 -39365894 - AluSq SINE Alu 0 313 1 2462 148 57 18 chr6 143049348 143049410 -39365832 - L1 LINE L1 -3231 2915 2857 1085 191 18 1 chr6 143049419 143049715 -39365527 + MER2 DNA MER2_type 6 345 0 1210 192 0 0 chr6 143049716 143049940 -39365302 - L1 LINE L1 -3293 2853 2630 439 257 167 40 chr6 143050108 143050330 -39364912 - L1M4 LINE L1 -2590 3556 3307 198 143 0 0 chr6 143050354 143050389 -39364853 + (TC)n Simple_repeat Simple_repeat 1 35 0 2272 62 0 31 chr6 143050449 143050799 -39364443 - AluY SINE Alu 0 341 1 286 256 37 0 chr6 143051171 143051253 -39363989 + LTR16C LTR ERVL 405 489 -2 1062 290 86 14 chr6 143051468 143052233 -39363009 - L1MEc LINE L1 -2391 3824 3005 382 315 51 71 chr6 143052234 143052628 -39362614 - L1MEc LINE L1 -3247 2968 2583 340 335 78 0 chr6 143052683 143053014 -39362228 - L1MEc LINE L1 -3735 2480 2134 402 264 53 83 chr6 143053908 143054173 -39361069 + L2 LINE L2 3056 3312 -1 701 275 65 23 chr6 143054367 143054629 -39360613 + MER45C DNA AcHobo 1 273 -680 287 247 68 0 chr6 143054804 143054877 -39360365 + MER45C DNA AcHobo 876 953 0 21 0 0 0 chr6 143055190 143055211 -39360031 + AT_rich Low_complexity Low_complexity 1 21 0 2302 127 27 16 chr6 143056783 143057154 -39358088 - THE1C LTR MaLR 0 375 1 8202 122 35 7 chr6 143057154 143058379 -39356863 - THE1C-int LTR MaLR 0 1580 322 1027 83 0 7 chr6 143058371 143058516 -39356726 - THE1C-int LTR MaLR -1436 144 1 * 1882 160 38 19 chr6 143058516 143058884 -39356358 - THE1C LTR MaLR 0 375 1 308 314 86 0 chr6 143059460 143059600 -39355642 + MER117 DNA MER1_type 7 158 -39 212 344 152 40 chr6 143059978 143060050 -39355192 + L2 LINE L2 3034 3097 -175 321 26 0 0 chr6 143060050 143060088 -39355154 + (TG)n Simple_repeat Simple_repeat 1 38 0 212 344 152 40 chr6 143060088 143060140 -39355102 + L2 LINE L2 3097 3172 -100 1477 172 69 17 chr6 143060145 143061089 -39354153 - L1MA4 LINE L1 0 6300 5300 17348 195 50 31 chr6 143061098 143061872 -39353370 - L1PA14 LINE L1 -4 7595 6838 2312 105 0 0 chr6 143061872 143062177 -39353065 - AluSg SINE Alu -5 305 1 17348 195 50 31 chr6 143062177 143065350 -39349892 - L1PA14 LINE L1 -761 6838 3728 2207 125 0 0 chr6 143065350 143065647 -39349595 - AluSg SINE Alu -13 297 1 17348 195 50 31 chr6 143065647 143068533 -39346709 - L1PA14 LINE L1 -3871 3728 6 1662 189 3 7 chr6 143068541 143068832 -39346410 - AluJo SINE Alu -18 294 5 5040 145 9 1 chr6 143068835 143069730 -39345512 - L1MA4 LINE L1 -813 5333 4432 246 182 57 0 chr6 143069731 143069819 -39345423 - L1MB3 LINE L1 -3 6180 6088 * 4035 161 38 3 chr6 143069818 143070518 -39344724 - L1MA4 LINE L1 -282 6018 5274 216 0 0 0 chr6 143070518 143070542 -39344700 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4035 161 38 3 chr6 143070542 143070906 -39344336 - L1MA4 LINE L1 -1026 5274 4924 1796 135 24 3 chr6 143070905 143071238 -39344004 - L1MA4 LINE L1 -1710 4436 4097 * 295 175 0 0 chr6 143071245 143071302 -39343940 - L1MA4 LINE L1 -2109 4037 3981 309 203 0 0 chr6 143071304 143071373 -39343869 + L1 LINE L1 3867 3935 -2211 218 243 100 0 chr6 143071911 143071981 -39343261 - L2 LINE L2 -1257 2057 1981 2722 295 145 27 chr6 143072003 143072877 -39342365 - L2 LINE L2 -116 3197 2427 2298 95 0 23 chr6 143072877 143073183 -39342059 + AluSx SINE Alu 1 299 -13 2722 295 145 27 chr6 143073183 143074021 -39341221 - L2 LINE L2 -886 2427 1269 2204 127 27 11 chr6 143075469 143075838 -39339404 + THE1C LTR MaLR 1 375 0 322 305 119 7 chr6 143076809 143076960 -39338282 - MIR SINE MIR -26 236 69 1387 220 49 123 chr6 143077759 143078374 -39336868 + MER77 LTR ERV1 54 599 -6 252 379 52 0 chr6 143078590 143078706 -39336536 + L2 LINE L2 3133 3254 -18 223 288 0 0 chr6 143078718 143078777 -39336465 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 2039 123 0 4 chr6 143079423 143079699 -39335543 + AluSq SINE Alu 1 275 -38 1056 146 0 0 chr6 143079699 143079720 -39335522 + (GGGGA)n Simple_repeat Simple_repeat 1 199 0 1056 146 0 0 chr6 143079720 143079898 -39335344 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 2257 147 54 8 chr6 143079951 143080339 -39334903 - MSTB LTR MaLR -20 406 1 205 245 0 0 chr6 143080499 143080552 -39334690 + MIR SINE MIR 146 198 -64 228 380 84 16 chr6 143080779 143081029 -39334213 - L2 LINE L2 -424 2890 2624 482 135 0 14 chr6 143081059 143081133 -39334109 + AluSg/x SINE Alu 216 288 -24 226 398 71 0 chr6 143081166 143081264 -39333978 + L2 LINE L2 3163 3267 -5 23 33 0 0 chr6 143081349 143081379 -39333863 + AT_rich Low_complexity Low_complexity 1 30 0 430 353 114 33 chr6 143082045 143082149 -39333093 + L2 LINE L2 2511 2605 -667 1824 143 42 70 chr6 143082149 143082535 -39332707 + THE1C LTR MaLR 1 375 0 430 353 114 33 chr6 143082535 143083115 -39332127 + L2 LINE L2 2605 3272 0 738 215 0 0 chr6 143084104 143084234 -39331008 - FLAM_C SINE Alu -3 130 1 2392 73 0 13 chr6 143084348 143084661 -39330581 + AluY SINE Alu 1 309 -2 24 77 0 0 chr6 143084785 143084837 -39330405 + AT_rich Low_complexity Low_complexity 1 52 0 922 159 0 0 chr6 143085027 143085178 -39330064 + AluJb SINE Alu 147 297 -15 1967 132 73 20 chr6 143085565 143085921 -39329321 - THE1C LTR MaLR 0 375 1 27 0 0 0 chr6 143086006 143086033 -39329209 + AT_rich Low_complexity Low_complexity 1 27 0 193 217 0 87 chr6 143088299 143088368 -39326874 + MER5B DNA MER1_type 89 151 -27 664 288 112 26 chr6 143088623 143089089 -39326153 - MLT1J LTR MaLR -2 509 4 21 57 0 0 chr6 143089336 143089371 -39325871 + AT_rich Low_complexity Low_complexity 1 35 0 4889 257 151 42 chr6 143089945 143090736 -39324506 + L2 LINE L2 748 1451 -1862 1965 121 40 79 chr6 143090736 143091115 -39324127 - THE1B LTR MaLR 0 364 1 4889 257 151 42 chr6 143091115 143091744 -39323498 + L2 LINE L2 1451 2010 -1303 661 294 119 35 chr6 143091744 143092121 -39323121 - MLT1I LTR MaLR 0 409 1 4889 257 151 42 chr6 143092121 143092391 -39322851 + L2 LINE L2 2010 2249 -1064 3594 128 47 19 chr6 143092391 143093009 -39322233 - L1PA16 LINE L1 -5 6161 5527 4889 257 151 42 chr6 143093009 143093626 -39321616 + L2 LINE L2 2249 3313 0 1004 164 49 6 chr6 143094106 143094289 -39320953 - MER20 DNA MER1_type 0 219 29 26 50 0 0 chr6 143094879 143094919 -39320323 + AT_rich Low_complexity Low_complexity 1 40 0 4241 143 9 23 chr6 143095334 143096085 -39319157 + L1PB4 LINE L1 5409 6149 -7 21 0 0 0 chr6 143096091 143096112 -39319130 + AT_rich Low_complexity Low_complexity 1 21 0 2032 130 3 7 chr6 143096627 143096920 -39318322 - AluSx SINE Alu -16 296 5 2417 83 0 0 chr6 143097097 143097397 -39317845 - AluY SINE Alu -11 300 1 6603 70 7 6 chr6 143099329 143100314 -39314928 + L1PA13 LINE L1 5190 6153 -10 466 283 22 14 chr6 143100380 143100518 -39314724 - MIR SINE MIR -106 156 18 1170 85 0 0 chr6 143100689 143100866 -39314376 + (TA)n Simple_repeat Simple_repeat 1 177 0 200 271 0 0 chr6 143101859 143101907 -39313335 + MIR SINE MIR 65 112 -150 888 291 102 27 chr6 143101909 143102545 -39312697 - L2 LINE L2 -2 3311 2632 373 298 21 0 chr6 143102541 143102635 -39312607 + MIR SINE MIR 39 134 -128 * 220 197 42 0 chr6 143103133 143103204 -39312038 + (TA)n Simple_repeat Simple_repeat 2 75 0 2242 111 10 0 chr6 143103793 143104100 -39311142 + AluSx SINE Alu 1 310 -2 855 158 0 0 chr6 143104610 143104777 -39310465 + FRAM SINE Alu 19 185 0 2135 103 0 0 chr6 143105924 143106227 -39309015 - AluSq SINE Alu 0 303 1 1266 87 0 0 chr6 143106238 143106410 -39308832 - AluSg/x SINE Alu -1 309 138 211 217 87 113 chr6 143106622 143106737 -39308505 + L2 LINE L2 3126 3237 -35 1089 243 94 8 chr6 143107072 143107455 -39307787 - MLT1C LTR MaLR -44 423 8 674 261 119 0 chr6 143107462 143107765 -39307477 + L1M4 LINE L1 2527 2865 -3281 21 0 0 0 chr6 143108814 143108835 -39306407 + AT_rich Low_complexity Low_complexity 1 21 0 277 238 12 0 chr6 143110370 143110450 -39304792 - Charlie8 DNA MER1_type -2270 147 67 188 357 14 0 chr6 143110546 143110616 -39304626 + MIR SINE MIR 79 149 -59 2097 125 6 29 chr6 143111098 143111410 -39303832 + AluSx SINE Alu 1 305 -7 283 221 52 0 chr6 143111818 143111954 -39303288 + (TA)n Simple_repeat Simple_repeat 1 143 0 2847 144 27 8 chr6 143115100 143115580 -39299662 + L1PA15 LINE L1 5677 6165 0 234 0 0 0 chr6 143115822 143115848 -39299394 + (CA)n Simple_repeat Simple_repeat 1 26 0 2290 103 7 0 chr6 143116837 143117147 -39298095 + AluSx SINE Alu 1 312 0 2115 161 4 109 chr6 143117840 143118307 -39296935 - MER47B DNA MER2_type 0 418 1 1919 156 14 8 chr6 143118731 143119090 -39296152 + L1MB7 LINE L1 5675 6035 -149 183 292 69 14 chr6 143119144 143119216 -39296026 + L2 LINE L2 2453 2528 -786 1763 152 58 0 chr6 143119674 143119951 -39295291 + AluJb SINE Alu 4 296 -16 359 292 70 35 chr6 143124068 143124352 -39290890 + L1ME LINE L1 5416 5709 -412 526 303 127 55 chr6 143124637 143125202 -39290040 - L1M4 LINE L1 -813 5333 4728 261 247 62 0 chr6 143125293 143125374 -39289868 - L1M4 LINE L1 -1542 4604 4519 450 247 11 132 chr6 143125488 143125601 -39289641 + MIR SINE MIR 82 164 -98 2925 6 0 0 chr6 143125601 143125918 -39289324 + AluYb8 SINE Alu 1 317 -1 450 247 11 132 chr6 143125918 143125994 -39289248 + MIR SINE MIR 164 248 -14 281 285 44 10 chr6 143126115 143126266 -39288976 - L1 LINE L1 -1907 4239 4080 23 78 0 0 chr6 143126312 143126363 -39288879 + AT_rich Low_complexity Low_complexity 1 51 0 5542 95 0 7 chr6 143126364 143127176 -39288066 - L1PA14 LINE L1 -3 7596 6791 2433 97 0 0 chr6 143127208 143127517 -39287725 - AluSc SINE Alu 0 309 1 17896 172 17 11 chr6 143127520 143133350 -39281892 - L1PA14 LINE L1 -783 6801 939 2349 122 0 0 chr6 143133358 143133718 -39281524 - THE1C-int LTR MaLR -1218 362 3 2115 132 11 42 chr6 143133720 143134100 -39281142 - THE1C LTR MaLR 0 375 8 3067 72 0 0 chr6 143134100 143134504 -39280738 + MLT2A1 LTR ERVL 1 404 -40 217 200 0 0 chr6 143134504 143134539 -39280703 + (CA)n Simple_repeat Simple_repeat 2 36 0 377 73 0 0 chr6 143134539 143134594 -39280648 + MLT2A1 LTR ERVL 390 444 0 22 0 0 0 chr6 143135006 143135028 -39280214 + AT_rich Low_complexity Low_complexity 1 22 0 1483 190 16 0 chr6 143135058 143135374 -39279868 + LTR56 LTR ERV1 111 431 -14 624 266 140 36 chr6 143135915 143136137 -39279105 - MIR SINE MIR -15 247 3 679 346 23 53 chr6 143136354 143136373 -39278869 - L2 LINE L2 -518 2796 2778 1754 187 67 0 chr6 143136373 143136715 -39278527 + MLT1A1 LTR MaLR 1 365 0 679 346 23 53 chr6 143136715 143137088 -39278154 - L2 LINE L2 -536 2778 2416 1136 181 63 100 chr6 143137253 143137373 -39277869 + AluJo SINE Alu 28 151 -161 7727 24 0 0 chr6 143137373 143138273 -39276969 + L1PA3 LINE L1 5254 6153 -2 1136 181 63 100 chr6 143138273 143138422 -39276820 + AluJo SINE Alu 151 287 -25 32 57 0 0 chr6 143138422 143138475 -39276767 + AT_rich Low_complexity Low_complexity 1 53 0 259 323 128 0 chr6 143138679 143138812 -39276430 + MIR SINE MIR 86 235 -27 237 266 40 57 chr6 143139612 143139736 -39275506 - MIR SINE MIR 0 262 141 222 290 16 0 chr6 143140159 143140221 -39275021 + L2 LINE L2 3246 3308 -5 247 379 90 36 chr6 143140558 143140946 -39274296 - L2 LINE L2 -925 2389 1981 339 321 103 18 chr6 143140948 143141113 -39274129 + L1MC4a LINE L1 5704 5882 -1926 24 53 0 0 chr6 143141151 143141189 -39274053 + AT_rich Low_complexity Low_complexity 1 38 0 222 318 42 62 chr6 143141405 143141597 -39273645 - L2 LINE L2 -1307 2007 1820 1709 174 0 0 chr6 143141862 143142126 -39273116 + AluJb SINE Alu 1 264 -48 501 143 11 0 chr6 143142126 143142217 -39273025 + AluJ/FRAM SINE Alu 221 312 0 1509 39 0 0 chr6 143142260 143142439 -39272803 - AluY SINE Alu 0 311 133 288 199 28 106 chr6 143143357 143143498 -39271744 - L1ME3A LINE L1 -243 5927 5798 1058 239 62 25 chr6 143143899 143144265 -39270977 + L1MB7 LINE L1 5797 6175 -9 204 40 0 0 chr6 143145643 143145668 -39269574 + (A)n Simple_repeat Simple_repeat 1 25 0 1501 196 0 0 chr6 143146413 143146673 -39268569 - AluJo SINE Alu -17 295 36 420 325 110 19 chr6 143146989 143147198 -39268044 - MIR SINE MIR -7 255 28 1192 179 53 123 chr6 143148047 143148460 -39266782 + MLT1B LTR MaLR 3 386 -4 1731 184 0 0 chr6 143148496 143148767 -39266475 + AluJo SINE Alu 1 271 -41 237 268 72 36 chr6 143149455 143149593 -39265649 + MLT1J LTR MaLR 326 468 -43 225 108 0 0 chr6 143149719 143149756 -39265486 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 343 236 28 137 chr6 143149761 143149943 -39265299 - L2 LINE L2 -22 3291 3130 268 345 0 12 chr6 143149924 143150008 -39265234 + MIR SINE MIR 8 90 -172 * 748 257 90 66 chr6 143150043 143150566 -39264676 + MLT1H1 LTR MaLR 24 555 0 522 247 136 6 chr6 143150566 143150728 -39264514 + MIR SINE MIR 77 259 -3 24 0 0 0 chr6 143150730 143150754 -39264488 + AT_rich Low_complexity Low_complexity 1 24 0 541 327 220 11 chr6 143150770 143151221 -39264021 - L2 LINE L2 -241 3072 2527 2009 128 35 0 chr6 143152918 143153206 -39262036 + AluSg SINE Alu 1 298 -12 261 0 0 0 chr6 143154585 143154614 -39260628 + (CA)n Simple_repeat Simple_repeat 2 30 0 360 143 0 0 chr6 143156613 143156683 -39258559 + (TC)n Simple_repeat Simple_repeat 1 70 0 183 42 0 0 chr6 143158785 143158809 -39256433 + (CCA)n Simple_repeat Simple_repeat 2 25 0 183 287 160 11 chr6 143161160 143161254 -39253988 + MIR SINE MIR 49 156 -106 183 129 0 0 chr6 143161533 143161564 -39253678 + (TC)n Simple_repeat Simple_repeat 1 31 0 300 27 0 0 chr6 143162304 143162341 -39252901 + (TC)n Simple_repeat Simple_repeat 1 37 0 312 188 281 21 chr6 143162535 143162631 -39252611 - MER5A DNA MER1_type -68 121 1 224 143 254 48 chr6 143163780 143163843 -39251399 + L2 LINE L2 3238 3313 0 303 227 250 15 chr6 143164277 143164409 -39250833 + MIR SINE MIR 90 252 -10 1605 102 5 0 chr6 143164409 143164615 -39250627 - AluSq SINE Alu -106 207 1 405 228 79 9 chr6 143164681 143164795 -39250447 - MER21B LTR ERV1 -54 809 688 415 123 148 0 chr6 143164796 143164877 -39250365 - MER21B LTR ERV1 -326 537 445 1639 219 19 80 chr6 143164917 143165429 -39249813 - MER21B LTR ERV1 -381 482 2 377 313 18 26 chr6 143166415 143166579 -39248663 - MIR SINE MIR -50 212 51 698 224 9 9 chr6 143166654 143166877 -39248365 - HsTC2 DNA Tc2 -66 1832 1610 993 285 59 63 chr6 143166936 143167179 -39248063 - MLT1H LTR MaLR -24 525 283 1923 164 7 0 chr6 143167179 143167478 -39247764 - AluSx SINE Alu -11 301 1 993 285 59 63 chr6 143167478 143167761 -39247481 - MLT1H LTR MaLR -266 283 1 438 241 98 17 chr6 143167789 143167963 -39247279 - HsTC2 DNA Tc2 -271 1627 1264 1042 233 105 24 chr6 143167992 143168076 -39247166 - HsTC2 DNA Tc2 -1296 602 526 1512 216 98 42 chr6 143168076 143168554 -39246688 + MLT1D LTR MaLR 1 505 0 1042 233 105 24 chr6 143168554 143168851 -39246391 - HsTC2 DNA Tc2 -1372 526 190 270 100 12 138 chr6 143168874 143168908 -39246334 - HsTC2 DNA Tc2 -1828 70 50 2161 148 0 0 chr6 143168908 143169212 -39246030 + AluSx SINE Alu 1 304 -8 270 100 12 138 chr6 143169212 143169257 -39245985 - HsTC2 DNA Tc2 -1848 50 1 220 333 77 0 chr6 143169340 143169418 -39245824 - L2 LINE L2 -21 3251 3168 1570 171 11 7 chr6 143170218 143170487 -39244755 - AluJb SINE Alu -30 282 13 5004 147 10 9 chr6 143170594 143171485 -39243757 - Ricksha_a DNA DNA -7 1174 283 534 224 56 0 chr6 143171494 143171637 -39243605 - Ricksha_a DNA DNA -1028 153 3 246 193 104 0 chr6 143171638 143171700 -39243542 + MIR SINE MIR 99 182 -26 260 236 28 0 chr6 143172243 143172315 -39242927 - L1ME LINE L1 -478 5643 5570 769 244 80 72 chr6 143172836 143173296 -39241946 - L1ME4a LINE L1 -192 5929 5466 202 93 0 70 chr6 143174632 143174675 -39240567 + (CATA)n Simple_repeat Simple_repeat 4 43 0 1852 116 77 0 chr6 143175020 143175305 -39239937 - AluSq SINE Alu -6 307 1 1949 135 24 0 chr6 143176274 143176563 -39238679 + AluJb SINE Alu 1 296 -16 22 35 0 0 chr6 143176647 143176676 -39238566 + AT_rich Low_complexity Low_complexity 1 29 0 598 135 27 18 chr6 143176968 143177079 -39238163 + L1MD1 LINE L1 18 129 -6411 5752 189 101 61 chr6 143177121 143177790 -39237452 + L1MD1 LINE L1 575 1216 -5324 2083 134 0 0 chr6 143177790 143178100 -39237142 - AluSx SINE Alu 0 310 1 5752 189 101 61 chr6 143178100 143178793 -39236449 + L1MD1 LINE L1 1216 2032 -4508 2275 105 10 10 chr6 143178793 143179097 -39236145 + AluSx SINE Alu 1 304 -8 5752 189 101 61 chr6 143179097 143179569 -39235673 + L1MD1 LINE L1 2032 2484 -4056 891 175 0 65 chr6 143179569 143179769 -39235473 + AluJo SINE Alu 118 304 -8 3267 233 42 12 chr6 143179769 143180900 -39234342 + L1MD1 LINE L1 2505 3669 -2871 3179 226 49 30 chr6 143180998 143182036 -39233206 + L1MD1 LINE L1 4433 5490 -1050 1734 204 41 3 chr6 143182044 143182388 -39232854 + MLT1A1 LTR MaLR 1 357 -8 2060 179 59 20 chr6 143182389 143182518 -39232724 + L1MD1 LINE L1 5492 5615 -1021 879 193 15 130 chr6 143182518 143182787 -39232455 - MER8 DNA MER2_type -1 238 1 2060 179 59 20 chr6 143182787 143183279 -39231963 + L1MD1 LINE L1 5615 6130 -506 750 136 110 0 chr6 143183395 143183549 -39231693 + L1MD1 LINE L1 6157 6327 -309 448 233 85 8 chr6 143183549 143183678 -39231564 + ERVL LTR ERVL 5009 5147 -617 407 256 0 0 chr6 143183678 143183764 -39231478 + MER82 DNA MER2_type 1 86 -567 235 364 68 15 chr6 143183911 143184043 -39231199 - MIR SINE MIR -122 140 2 439 200 24 80 chr6 143184075 143184200 -39231042 + MER82 DNA MER2_type 444 561 -92 440 211 9 26 chr6 143184211 143184325 -39230917 + MLT2F LTR ERVL 552 663 0 1137 201 26 30 chr6 143184380 143184709 -39230533 + MLT1D LTR MaLR 116 503 -2 1779 129 12 46 chr6 143185328 143185654 -39229588 + MER7A DNA MER2_type 3 315 -31 824 159 13 46 chr6 143186290 143186441 -39228801 + AluJo SINE Alu 1 146 -166 250 331 67 72 chr6 143186726 143187107 -39228135 + L2 LINE L2 2582 3062 -210 2321 104 0 7 chr6 143187521 143187828 -39227414 + AluSx SINE Alu 1 305 -7 550 241 139 62 chr6 143188120 143188336 -39226906 - LTR41 LTR ERVL -308 465 267 1897 133 0 0 chr6 143188336 143188666 -39226576 + AluSx SINE Alu 9 338 0 550 241 139 62 chr6 143188666 143188879 -39226363 - LTR41 LTR ERVL -506 267 1 2221 97 10 0 chr6 143189136 143189426 -39225816 - AluSg SINE Alu -17 293 1 207 272 192 48 chr6 143189426 143189545 -39225697 - MIR SINE MIR -114 148 12 616 279 98 10 chr6 143189815 143190019 -39225223 - MIR SINE MIR -8 254 33 2044 123 20 3 chr6 143190027 143190320 -39224922 - AluSx SINE Alu -14 298 1 22 35 0 0 chr6 143191082 143191111 -39224131 + AT_rich Low_complexity Low_complexity 1 29 0 236 215 169 0 chr6 143191586 143191651 -39223591 + MIR3 SINE MIR 125 200 -8 332 316 219 5 chr6 143192432 143192628 -39222614 + MIR SINE MIR 13 250 -12 265 265 0 12 chr6 143192780 143192863 -39222379 - L1M4 LINE L1 -1985 4161 4080 481 289 85 15 chr6 143193078 143193338 -39221904 - L1ME3A LINE L1 -221 5949 5672 951 276 92 41 chr6 143193432 143194255 -39220987 - L1ME3A LINE L1 -799 5347 4483 2009 116 3 52 chr6 143194570 143194880 -39220362 + AluSx SINE Alu 1 295 -17 1721 153 137 0 chr6 143195064 143195385 -39219857 + MLT1A1 LTR MaLR 1 365 0 869 280 35 51 chr6 143195723 143196237 -39219005 - L1ME3A LINE L1 -1875 4271 3766 2630 216 46 67 chr6 143196259 143196892 -39218350 - L1ME1 LINE L1 -10 6139 5542 2326 67 3 0 chr6 143196892 143197208 -39218034 - AluSp SINE Alu 0 317 1 2630 216 46 67 chr6 143197208 143197872 -39217370 - L1ME1 LINE L1 -607 5542 4865 247 119 0 0 chr6 143197913 143197955 -39217287 + Alu SINE Alu 1 42 -261 29353 96 8 25 chr6 143197955 143204161 -39211081 + L1PA7 LINE L1 269 6461 -8 1280 273 49 17 chr6 143204237 143204764 -39210478 - L1PBa LINE L1 -6314 549 6 572 271 131 66 chr6 143204783 143204826 -39210416 - L1ME1 LINE L1 -4044 2266 2227 2066 145 0 19 chr6 143204826 143205143 -39210099 - AluSx SINE Alu -1 311 1 572 271 131 66 chr6 143205143 143206310 -39208932 - L1ME1 LINE L1 -4083 2227 949 22 70 0 0 chr6 143206375 143206418 -39208824 + AT_rich Low_complexity Low_complexity 1 43 0 2160 111 3 39 chr6 143206420 143206726 -39208516 + AluSx SINE Alu 1 295 -17 285 303 59 59 chr6 143206862 143207199 -39208043 - L1ME1 LINE L1 -5254 865 529 322 313 96 58 chr6 143207237 143207550 -39207692 - L1ME1 LINE L1 -5737 382 58 243 222 16 0 chr6 143207637 143207700 -39207542 - L1P LINE L1 -2739 3407 3344 415 293 121 23 chr6 143207704 143207960 -39207282 - L1MDa LINE L1 -2806 3734 3454 2259 186 13 15 chr6 143208077 143208539 -39206703 + LOR1b LTR ERV1 1 461 0 350 300 11 58 chr6 143208850 143209040 -39206202 - L1MDa LINE L1 -3956 2584 2404 1697 156 0 37 chr6 143209312 143209632 -39205610 - AluJb SINE Alu 0 309 1 2334 112 0 3 chr6 143209645 143209959 -39205283 - AluSq SINE Alu 0 313 1 435 95 111 119 chr6 143210093 143210219 -39205023 + L1MA5A LINE L1 6169 6293 -4 279 0 0 0 chr6 143210474 143210505 -39204737 + (TG)n Simple_repeat Simple_repeat 2 32 0 1920 153 28 0 chr6 143210948 143211236 -39204006 - AluJb SINE Alu -16 296 1 1678 154 114 0 chr6 143211262 143211542 -39203700 - AluJo SINE Alu 0 312 1 317 262 60 12 chr6 143211558 143211726 -39203516 - L1M4 LINE L1 -1441 4705 4530 1459 123 26 13 chr6 143211732 143211959 -39203283 + MER30 DNA MER1_type 1 230 0 233 297 48 68 chr6 143211986 143212235 -39203007 - MLT1K LTR MaLR -162 426 183 617 160 55 192 chr6 143212240 143212584 -39202658 - LTR41 LTR ERVL -9 764 468 272 297 0 0 chr6 143212641 143212705 -39202537 - LTR41 LTR ERVL -475 298 235 1550 207 35 45 chr6 143212971 143213074 -39202168 + MLT1C LTR MaLR 9 112 -355 1855 161 0 13 chr6 143213074 143213373 -39201869 + AluJb SINE Alu 1 295 -17 1550 207 35 45 chr6 143213373 143213733 -39201509 + MLT1C LTR MaLR 112 467 0 4993 268 58 6 chr6 143213895 143215428 -39199814 - ERVL LTR ERVL -387 5377 3765 499 228 83 120 chr6 143215455 143215731 -39199511 - LTR41 LTR ERVL -507 266 1 252 0 0 0 chr6 143215962 143215990 -39199252 + (CA)n Simple_repeat Simple_repeat 2 29 0 426 259 69 0 chr6 143217319 143217435 -39197807 - MER5C DNA MER1_type -200 124 1 2714 86 25 27 chr6 143217530 143217936 -39197306 + MLT2A2 LTR ERVL 1 405 -48 265 120 80 0 chr6 143217994 143218044 -39197198 + MLT2A2 LTR ERVL 400 453 0 560 123 9 28 chr6 143218260 143218366 -39196876 - L1PB4 LINE L1 -5 6151 6048 355 315 153 15 chr6 143218637 143218932 -39196310 + L2 LINE L2 2713 3050 -222 276 30 0 0 chr6 143219431 143219464 -39195778 + (GCGTG)n Simple_repeat Simple_repeat 3 35 0 296 226 107 71 chr6 143219962 143220130 -39195112 + Charlie2a DNA MER1_type 1473 1646 -1216 373 234 186 48 chr6 143220732 143220899 -39194343 - L1M2 LINE L1 -5902 947 758 595 256 73 37 chr6 143224943 143225134 -39190108 + MIR SINE MIR 20 217 -45 24 0 0 0 chr6 143226069 143226093 -39189149 + AT_rich Low_complexity Low_complexity 1 24 0 1922 152 0 23 chr6 143226345 143226648 -39188594 - AluSx SINE Alu -16 296 1 198 0 0 0 chr6 143226766 143226788 -39188454 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 2164 119 0 3 chr6 143226791 143227084 -39188158 - AluSx SINE Alu -20 292 1 26 0 0 0 chr6 143227720 143227746 -39187496 + AT_rich Low_complexity Low_complexity 1 26 0 477 294 92 62 chr6 143228659 143228759 -39186483 + L2 LINE L2 2929 3024 -289 2194 124 10 0 chr6 143228759 143229065 -39186177 - AluSg SINE Alu -1 309 1 477 294 92 62 chr6 143229065 143229321 -39185921 + L2 LINE L2 3024 3296 -17 198 376 20 10 chr6 143229576 143229677 -39185565 - L2 LINE L2 -611 2703 2602 296 269 164 10 chr6 143230585 143230689 -39184553 + MER5B DNA MER1_type 1 120 -58 1805 166 16 7 chr6 143230716 143231023 -39184219 - AluJb SINE Alu -2 310 1 2252 63 0 36 chr6 143231050 143231353 -39183889 + AluY SINE Alu 1 292 -19 218 269 144 31 chr6 143231395 143231555 -39183687 - L3b LINE CR1 -304 1279 1102 203 0 37 0 chr6 143231715 143231742 -39183500 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2390 63 7 10 chr6 143231748 143232049 -39183193 - AluY SINE Alu -11 300 1 808 205 102 15 chr6 143233142 143233347 -39181895 - MIR SINE MIR 0 262 40 212 143 0 0 chr6 143233364 143233399 -39181843 + (GA)n Simple_repeat Simple_repeat 2 36 0 209 81 0 27 chr6 143233399 143233436 -39181806 + (TG)n Simple_repeat Simple_repeat 2 37 0 185 358 83 8 chr6 143233490 143233610 -39181632 - L2 LINE L2 -20 3293 3165 966 287 135 62 chr6 143233732 143234460 -39180782 + L2 LINE L2 2175 2955 -359 1395 188 145 0 chr6 143234763 143235066 -39180176 - MER7A DNA MER2_type -1 345 1 1587 97 97 9 chr6 143235308 143235536 -39179706 - AluSc SINE Alu -9 300 53 203 301 145 42 chr6 143235765 143235931 -39179311 - MIR SINE MIR -1 261 79 1762 150 44 0 chr6 143235968 143236262 -39178980 - AluSx SINE Alu -5 307 1 207 0 0 0 chr6 143236553 143236576 -39178666 + (T)n Simple_repeat Simple_repeat 1 23 0 222 344 16 72 chr6 143237235 143237360 -39177882 - L3 LINE CR1 -2 1575 1458 1239 184 36 0 chr6 143237898 143238121 -39177121 - AluJo SINE Alu 0 312 82 4727 149 72 17 chr6 143238121 143238881 -39176361 - L1MA6 LINE L1 -1 6299 5460 225 0 0 0 chr6 143238881 143238906 -39176336 + (TTG)n Simple_repeat Simple_repeat 2 26 0 4727 149 72 17 chr6 143238906 143239245 -39175997 - L1MA6 LINE L1 -840 5460 5141 333 250 103 56 chr6 143239443 143239675 -39175567 - L1MC4 LINE L1 -150 7892 7650 215 174 22 0 chr6 143239704 143239750 -39175492 - L3 LINE CR1 -742 835 789 770 185 185 0 chr6 143239770 143239959 -39175283 - MER58A DNA MER1_type 0 224 1 264 30 0 0 chr6 143239980 143240013 -39175229 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 553 237 111 35 chr6 143240098 143240296 -39174946 - MIR SINE MIR 0 262 50 222 367 101 0 chr6 143240368 143240507 -39174735 - L3 LINE CR1 -1083 494 342 25 31 0 0 chr6 143241258 143241290 -39173952 + AT_rich Low_complexity Low_complexity 1 32 0 343 300 185 32 chr6 143241306 143241619 -39173623 - L1ME4a LINE L1 -69 6052 5692 2230 88 18 0 chr6 143241643 143241926 -39173316 - AluSg SINE Alu -20 290 3 587 278 177 34 chr6 143242135 143242699 -39172543 + L1M4 LINE L1 2845 3489 -2657 279 277 110 0 chr6 143242815 143242970 -39172272 + L1M4 LINE L1 3599 3770 -2376 275 328 90 16 chr6 143243601 143243723 -39171519 - L2 LINE L2 -3 3310 3180 1959 115 66 0 chr6 143244009 143244297 -39170945 + AluSg1 SINE Alu 1 307 -2 1018 249 71 75 chr6 143244951 143245456 -39169786 - MLT1J LTR MaLR 0 511 9 572 247 102 16 chr6 143245563 143245749 -39169493 - MIR SINE MIR 0 262 61 187 261 0 87 chr6 143246459 143246528 -39168714 + L2 LINE L2 3197 3259 -54 2162 120 7 0 chr6 143246956 143247248 -39167994 - AluSx SINE Alu -18 294 1 285 240 130 20 chr6 143247629 143247729 -39167513 - L2 LINE L2 0 3313 3203 35 0 0 0 chr6 143247899 143247934 -39167308 + AT_rich Low_complexity Low_complexity 1 35 0 2379 97 0 16 chr6 143248264 143248572 -39166670 - AluSc SINE Alu -6 303 1 270 265 327 6 chr6 143249156 143249318 -39165924 + L2 LINE L2 2132 2345 -969 616 294 100 34 chr6 143249320 143249589 -39165653 - L2 LINE L2 -164 3149 2863 523 174 87 60 chr6 143252056 143252274 -39162968 - L1ME3A LINE L1 -152 6018 5795 2249 104 3 3 chr6 143252300 143252599 -39162643 + AluSc SINE Alu 1 299 -10 405 58 0 0 chr6 143252599 143252651 -39162591 + (TA)n Simple_repeat Simple_repeat 2 53 0 225 0 0 0 chr6 143254926 143254951 -39160291 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 143256488 143256511 -39158731 + AT_rich Low_complexity Low_complexity 1 23 0 368 246 131 15 chr6 143258978 143259108 -39156134 + L2 LINE L2 1613 1757 -1557 190 265 175 47 chr6 143259161 143259372 -39155870 - L2 LINE L2 -86 3227 2990 256 257 108 34 chr6 143259404 143259552 -39155690 - L2 LINE L2 -1553 1761 1603 1462 259 151 19 chr6 143259563 143260184 -39155058 - L2 LINE L2 -1819 1495 793 313 309 73 0 chr6 143260179 143260315 -39154927 + L2 LINE L2 1741 1886 -1428 * 919 252 129 27 chr6 143260350 143260791 -39154451 + L2 LINE L2 2018 2503 -811 3590 263 156 24 chr6 143260800 143261747 -39153495 - L2 LINE L2 -1 3312 2492 2353 61 27 3 chr6 143261747 143262043 -39153199 + AluY SINE Alu 1 303 -8 3590 263 156 24 chr6 143262043 143262992 -39152250 - L2 LINE L2 -821 2492 1150 651 296 208 4 chr6 143263006 143263408 -39151834 + L2 LINE L2 2699 3264 -8 295 196 0 0 chr6 143263408 143263459 -39151783 + MIR SINE MIR 206 256 -6 206 154 0 26 chr6 143263459 143263498 -39151744 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 1792 79 0 68 chr6 143264302 143264568 -39150674 + AluY SINE Alu 42 289 -22 3733 137 13 0 chr6 143264574 143265120 -39150122 + L1PA16 LINE L1 5611 6163 -3 1870 147 7 3 chr6 143265857 143266142 -39149100 - AluJb SINE Alu -26 286 1 758 236 130 63 chr6 143266691 143267136 -39148106 + MLT1H LTR MaLR 72 546 -3 1112 112 18 18 chr6 143268443 143268613 -39146629 + L1PB1 LINE L1 5978 6147 -4 635 254 86 53 chr6 143268661 143269058 -39146184 - MER97c DNA MER1_type? -56 1034 625 1216 309 140 16 chr6 143270700 143271335 -39143907 - L3 LINE CR1 -96 1481 768 201 203 0 62 chr6 143271391 143271455 -39143787 - L3 LINE CR1 -820 757 698 240 214 0 0 chr6 143271736 143271792 -39143450 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 308 177 152 25 chr6 143271850 143271929 -39143313 - L1MC5 LINE L1 -502 7459 7371 931 227 117 47 chr6 143271957 143272300 -39142942 + L1MC5 LINE L1 6968 7334 -627 21 0 0 75 chr6 143272303 143272343 -39142899 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 143272462 143272485 -39142757 + AT_rich Low_complexity Low_complexity 1 23 0 2342 103 0 10 chr6 143272679 143272991 -39142251 + AluSg SINE Alu 2 310 0 740 227 119 99 chr6 143273132 143273190 -39142052 + L1MC5 LINE L1 7324 7379 -582 2043 130 6 25 chr6 143273190 143273505 -39141737 + AluSx SINE Alu 1 309 -3 740 227 119 99 chr6 143273505 143274024 -39141218 + L1MC5 LINE L1 7379 7913 -48 612 263 73 6 chr6 143275078 143275257 -39139985 - MIR SINE MIR -70 192 2 26 0 0 0 chr6 143275267 143275293 -39139949 + AT_rich Low_complexity Low_complexity 1 26 0 1500 156 70 0 chr6 143276862 143276962 -39138280 + AluJo SINE Alu 21 113 -199 332 0 0 44 chr6 143276962 143277007 -39138235 + (TAAAA)n Simple_repeat Simple_repeat 1 43 0 1500 156 70 0 chr6 143277007 143277149 -39138093 + AluJo SINE Alu 113 280 -32 1391 146 0 5 chr6 143278646 143278845 -39136397 + AluJ SINE Alu 1 198 -114 667 147 0 0 chr6 143278962 143279064 -39136178 + AluJ SINE Alu 207 308 -4 1824 142 4 4 chr6 143279066 143279341 -39135901 + AluSx SINE Alu 1 275 -37 194 0 39 0 chr6 143279351 143279377 -39135865 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1125 184 116 85 chr6 143279744 143279993 -39135249 - Charlie2 DNA MER1_type 0 2862 2593 1588 174 3 24 chr6 143279993 143280281 -39134961 + AluJo SINE Alu 1 282 -30 1125 184 116 85 chr6 143280281 143280444 -39134798 - Charlie2 DNA MER1_type -269 2593 2437 908 160 28 0 chr6 143280451 143280622 -39134620 + AluSp SINE Alu 137 311 0 773 215 122 19 chr6 143280627 143281114 -39134128 - Charlie2 DNA MER1_type -418 2444 1867 434 303 155 21 chr6 143281125 143281371 -39133871 - Charlie2 DNA MER1_type -2540 322 32 1840 130 67 48 chr6 143281371 143281701 -39133541 - MER1B DNA MER1_type 0 337 2 434 303 155 21 chr6 143281701 143281738 -39133504 - Charlie2 DNA MER1_type -2830 32 1 1517 78 34 10 chr6 143282582 143282787 -39132455 + L1PA11 LINE L1 5961 6170 -4 22 0 0 0 chr6 143282787 143282809 -39132433 + AT_rich Low_complexity Low_complexity 1 22 0 1632 183 43 116 chr6 143283358 143283590 -39131652 + LTR40a LTR ERVL 2 179 -340 234 0 0 0 chr6 143283590 143283616 -39131626 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1632 183 43 116 chr6 143283616 143283892 -39131350 + LTR40a LTR ERVL 179 473 -46 794 203 13 13 chr6 143283888 143284046 -39131196 + LTR40b LTR ERVL 305 462 0 * 1037 274 30 157 chr6 143284165 143284609 -39130633 - L2 LINE L2 -386 2928 2681 2006 128 3 3 chr6 143284609 143284933 -39130309 + AluSx SINE Alu 1 324 0 1037 274 30 157 chr6 143284933 143285491 -39129751 - L2 LINE L2 -633 2681 2053 22 0 0 0 chr6 143285904 143285926 -39129316 + AT_rich Low_complexity Low_complexity 1 22 0 503 70 61 0 chr6 143286216 143286331 -39128911 + (TA)n Simple_repeat Simple_repeat 1 122 0 466 328 8 66 chr6 143286418 143286662 -39128580 - L2 LINE L2 -337 2977 2748 191 205 0 26 chr6 143287348 143287387 -39127855 - L3 LINE CR1 -443 1134 1097 2696 153 127 73 chr6 143288385 143289056 -39126186 + MER39 LTR ERV1 1 707 0 260 314 88 0 chr6 143289844 143289946 -39125296 + L2 LINE L2 3180 3290 -23 186 43 0 0 chr6 143289953 143289976 -39125266 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 384 152 15 15 chr6 143290299 143290365 -39124877 + LTR40a LTR ERVL 454 519 0 361 241 23 11 chr6 143291049 143291136 -39124106 - L2 LINE L2 -1 3271 3184 2493 48 0 19 chr6 143291200 143291509 -39123733 + AluY SINE Alu 1 303 -8 390 338 108 9 chr6 143291860 143292073 -39123169 - MIR SINE MIR -2 260 27 473 307 72 15 chr6 143292074 143292338 -39122904 + L2 LINE L2 2868 3146 -167 206 319 0 0 chr6 143292435 143292507 -39122735 + L2 LINE L2 3242 3313 0 198 209 0 23 chr6 143292681 143292724 -39122518 + MIR SINE MIR 58 99 -109 21 0 0 0 chr6 143292826 143292847 -39122395 + AT_rich Low_complexity Low_complexity 1 21 0 444 294 45 23 chr6 143294536 143294713 -39120529 - MIR SINE MIR -50 212 32 234 218 18 18 chr6 143295145 143295200 -39120042 + MIR SINE MIR 16 70 -138 2241 92 0 0 chr6 143295246 143295563 -39119679 + AluSq SINE Alu 13 329 0 341 216 23 11 chr6 143295700 143295788 -39119454 + MER65A LTR ERV1 1 89 -356 855 295 105 32 chr6 143296837 143297369 -39117873 + MLT2F LTR ERVL 1 571 -92 386 307 15 15 chr6 143297379 143297516 -39117726 + MLT2E LTR ERVL 472 608 -20 440 217 43 9 chr6 143297778 143297893 -39117349 + MLT1J LTR MaLR 384 502 -9 494 224 48 48 chr6 143298268 143298433 -39116809 + MIR SINE MIR 91 255 -7 1952 135 40 3 chr6 143298515 143298812 -39116430 - AluSx SINE Alu -4 308 1 226 115 39 0 chr6 143299403 143299455 -39115787 + A-rich Low_complexity Low_complexity 4 57 0 329 336 8 55 chr6 143300066 143300194 -39115048 + L2 LINE L2 3147 3268 -4 282 217 14 14 chr6 143300418 143300487 -39114755 + GA-rich Low_complexity Low_complexity 1 69 0 952 101 0 0 chr6 143303913 143304042 -39111200 - AluSg/x SINE Alu -7 303 175 208 296 92 102 chr6 143304042 143304110 -39111132 + L2 LINE L2 2995 3062 -210 2157 96 26 10 chr6 143304110 143304413 -39110829 - AluSc SINE Alu -1 308 1 208 296 92 102 chr6 143304413 143304540 -39110702 + L2 LINE L2 3062 3188 -84 2149 121 7 3 chr6 143305117 143305424 -39109818 - AluSx SINE Alu -4 308 1 223 155 0 35 chr6 143305424 143305464 -39109778 + CT-rich Low_complexity Low_complexity 3 42 -16 2300 102 13 0 chr6 143305464 143305768 -39109474 - AluSx SINE Alu -4 308 1 223 155 0 35 chr6 143305768 143305785 -39109457 + CT-rich Low_complexity Low_complexity 42 58 0 2226 147 40 91 chr6 143306422 143306829 -39108413 + MSTB LTR MaLR 1 384 -42 2317 112 0 6 chr6 143306829 143307143 -39108099 - AluJb SINE Alu 0 312 1 2226 147 40 91 chr6 143307143 143307184 -39108058 + MSTB LTR MaLR 384 426 0 517 264 27 70 chr6 143307280 143307538 -39107704 - MLT1L LTR MaLR -151 464 218 804 239 24 0 chr6 143308106 143308273 -39106969 + FRAM SINE Alu 5 175 -1 195 139 0 0 chr6 143309247 143309283 -39105959 + (GA)n Simple_repeat Simple_repeat 1 36 0 1864 159 0 7 chr6 143309446 143309754 -39105488 + AluJo SINE Alu 1 306 0 22 0 0 0 chr6 143310133 143310155 -39105087 + AT_rich Low_complexity Low_complexity 1 22 0 2283 105 3 0 chr6 143310266 143310571 -39104671 + AluSc SINE Alu 1 306 -3 2472 78 0 7 chr6 143311183 143311492 -39103750 + AluSq SINE Alu 1 307 -6 236 278 0 0 chr6 143311525 143311579 -39103663 + L2 LINE L2 3251 3304 -9 261 360 18 9 chr6 143312065 143312179 -39103063 + MIR3 SINE MIR 1 115 -93 404 295 139 0 chr6 143312236 143312402 -39102840 + MIR SINE MIR 74 262 0 298 220 184 7 chr6 143312401 143312513 -39102729 + MIR SINE MIR 113 248 -14 * 1723 121 35 46 chr6 143313276 143313558 -39101684 + AluSx SINE Alu 5 283 -29 1730 141 99 0 chr6 143315069 143315353 -39099889 + AluSx SINE Alu 1 312 0 201 264 69 0 chr6 143316214 143316286 -39098956 + MIR SINE MIR 63 139 -69 198 0 0 0 chr6 143317676 143317698 -39097544 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1731 136 47 39 chr6 143317701 143317980 -39097262 - AluSx SINE Alu -31 281 1 474 18 0 0 chr6 143319002 143319057 -39096185 + (CA)n Simple_repeat Simple_repeat 1 55 0 513 219 222 17 chr6 143320343 143320558 -39094684 - MIR SINE MIR 0 262 11 411 347 99 0 chr6 143321693 143321814 -39093428 + L2 LINE L2 3134 3266 -6 550 217 50 8 chr6 143321850 143321970 -39093272 + L2 LINE L2 3189 3313 0 259 256 122 11 chr6 143322391 143322481 -39092761 - MIR SINE MIR -77 185 86 1395 197 39 13 chr6 143322702 143323012 -39092230 - L1ME2 LINE L1 -173 5991 5674 22 0 0 0 chr6 143323710 143323732 -39091510 + AT_rich Low_complexity Low_complexity 1 22 0 598 247 43 27 chr6 143323753 143323939 -39091303 + MER91B DNA MER1_type 2 190 0 284 336 70 0 chr6 143324587 143324730 -39090512 + LTR67 LTR ERVL 151 303 -254 232 229 0 0 chr6 143324814 143324862 -39090380 + LTR67 LTR ERVL 509 556 -1 1442 245 57 75 chr6 143324896 143325168 -39090074 + MER69 DNA AcHobo 1 261 -965 2211 119 0 26 chr6 143325168 143325480 -39089762 - AluSx SINE Alu -8 304 1 1442 245 57 75 chr6 143325480 143325701 -39089541 + MER69 DNA AcHobo 261 485 -741 1005 204 169 31 chr6 143325716 143325917 -39089325 + MER69 DNA AcHobo 2163 2335 -191 1588 157 10 77 chr6 143325917 143326217 -39089025 + AluJb SINE Alu 2 281 -31 1005 204 169 31 chr6 143326217 143326259 -39088983 + MER69 DNA AcHobo 2335 2370 -156 2323 85 20 0 chr6 143326259 143326553 -39088689 - AluY SINE Alu -11 300 1 1005 204 169 31 chr6 143326553 143326627 -39088615 + MER69 DNA AcHobo 2370 2525 -1 417 301 42 30 chr6 143326689 143326855 -39088387 + L2 LINE L2 2545 2712 -602 2128 120 7 23 chr6 143328107 143328416 -39086826 - AluSq SINE Alu -9 304 1 286 350 49 0 chr6 143328639 143328762 -39086480 + L2 LINE L2 3180 3308 -5 693 236 102 18 chr6 143328853 143329064 -39086178 + MIR SINE MIR 46 259 -3 2168 134 0 3 chr6 143329122 143329427 -39085815 + AluJb SINE Alu 5 308 -4 274 341 87 7 chr6 143329431 143329569 -39085673 + MIR SINE MIR 20 168 -94 1165 68 0 0 chr6 143431550 143431683 -38983559 - AluSq/x SINE Alu -179 133 1 1804 253 72 47 chr6 143432055 143432383 -38982859 + L1MEc LINE L1 1402 1720 -4495 2195 113 9 28 chr6 143432383 143432701 -38982541 + AluSx SINE Alu 1 312 0 1804 253 72 47 chr6 143432701 143432983 -38982259 + L1MEc LINE L1 1720 1993 -4222 2177 128 3 0 chr6 143432983 143433287 -38981955 + AluSx SINE Alu 1 305 -7 1804 253 72 47 chr6 143433287 143433803 -38981439 + L1MEc LINE L1 1993 2525 -3690 2282 105 0 16 chr6 143433803 143434107 -38981135 + AluSp SINE Alu 1 299 -14 1804 253 72 47 chr6 143434107 143434243 -38980999 + L1MEc LINE L1 2525 2656 -3559 378 0 0 0 chr6 143434243 143434285 -38980957 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 491 108 12 36 chr6 143434426 143434509 -38980733 + AluJ/FRAM SINE Alu 224 304 -8 2198 124 0 0 chr6 143434571 143434869 -38980373 - AluSq SINE Alu -15 298 1 513 342 26 23 chr6 143435559 143435758 -38979484 + L3 LINE CR1 1129 1331 -246 2526 57 0 22 chr6 143435758 143436074 -38979168 + AluY SINE Alu 3 311 0 513 342 26 23 chr6 143436074 143436140 -38979102 + L3 LINE CR1 1331 1395 -182 853 77 0 8 chr6 143436211 143436328 -38978914 - AluSc SINE Alu -3 306 191 206 154 0 26 chr6 143436392 143436431 -38978811 + T-rich Low_complexity Low_complexity 2 39 0 2968 124 15 52 chr6 143436929 143436974 -38978268 - L1MB1 LINE L1 -3 6165 6120 2362 82 10 0 chr6 143436974 143437268 -38977974 - AluSx SINE Alu -15 297 1 2252 89 41 0 chr6 143437277 143437568 -38977674 - AluSg SINE Alu -7 303 1 2968 124 15 52 chr6 143437568 143438036 -38977206 - L1MB1 LINE L1 -56 6112 5661 2231 120 0 0 chr6 143438135 143438434 -38976808 + AluSx SINE Alu 1 299 -13 2259 92 0 0 chr6 143438651 143438960 -38976282 - AluSx SINE Alu 0 309 1 959 136 7 0 chr6 143439066 143439213 -38976029 + L1P5 LINE L1 5556 5703 -448 228 224 0 0 chr6 143439195 143439244 -38975998 - L1MC4 LINE L1 -1342 6700 6652 * 286 284 23 0 chr6 143439256 143439344 -38975898 - L1MC4 LINE L1 -1339 6703 6614 2545 84 11 42 chr6 143439353 143439735 -38975507 + L1PB1 LINE L1 5782 6151 0 1987 134 24 7 chr6 143440095 143440386 -38974856 + AluSx SINE Alu 2 297 -15 1469 108 0 14 chr6 143440666 143440889 -38974353 - L1PA14 LINE L1 -1 6160 5941 2375 112 0 0 chr6 143440896 143441201 -38974041 - AluSx SINE Alu -7 305 1 2114 122 0 42 chr6 143441201 143441513 -38973729 - AluSx SINE Alu -13 299 1 211 278 22 33 chr6 143441881 143441971 -38973271 + L2 LINE L2 1884 1972 -1342 479 302 54 0 chr6 143442111 143442260 -38972982 + MIR SINE MIR 105 261 -1 284 313 0 12 chr6 143442317 143442400 -38972842 - L2 LINE L2 -192 3080 2999 824 49 0 29 chr6 143442402 143442504 -38972738 + AluYa5 SINE Alu 35 133 -178 1815 131 4 0 chr6 143442720 143442987 -38972255 - AluSx SINE Alu -3 309 42 2780 13 0 3 chr6 143443662 143443964 -38971278 - AluY SINE Alu -10 301 1 1635 177 17 10 chr6 143444815 143445103 -38970139 + AluJo SINE Alu 1 290 -22 225 197 0 0 chr6 143445156 143445222 -38970020 + A-rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr6 143445222 143445244 -38969998 + AT_rich Low_complexity Low_complexity 1 22 0 2477 77 0 3 chr6 143445816 143446127 -38969115 + AluY SINE Alu 1 310 -1 472 303 42 0 chr6 143446137 143446302 -38968940 + MIR SINE MIR 26 197 -65 722 178 0 48 chr6 143446315 143446461 -38968781 - FLAM_C SINE Alu -3 140 2 1741 155 29 4 chr6 143446705 143446982 -38968260 + AluJo SINE Alu 1 284 -28 213 271 114 43 chr6 143447140 143447280 -38967962 - MIR SINE MIR -3 259 110 718 184 32 0 chr6 143447345 143447470 -38967772 - FLAM_C SINE Alu -13 130 2 1115 108 77 52 chr6 143447481 143447703 -38967539 - AluSg/x SINE Alu 0 312 103 2082 118 0 0 chr6 143448756 143449070 -38966172 - AluSg SINE Alu 0 314 1 1045 202 0 43 chr6 143449129 143449362 -38965880 + AluJb SINE Alu 86 308 -4 2345 77 0 0 chr6 143449988 143450273 -38964969 + AluSg SINE Alu 1 285 -25 198 0 0 0 chr6 143450990 143451012 -38964230 + (T)n Simple_repeat Simple_repeat 1 22 0 701 168 0 18 chr6 143451166 143451279 -38963963 + AluJo SINE Alu 2 112 -200 259 132 0 0 chr6 143451279 143451317 -38963925 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 897 246 5 0 chr6 143451317 143451504 -38963738 + AluJo SINE Alu 101 288 -24 236 286 13 13 chr6 143451593 143451670 -38963572 - MIR SINE MIR -113 149 73 192 321 54 92 chr6 143451915 143452069 -38963173 + L2 LINE L2 2556 2714 -600 2219 117 3 0 chr6 143452069 143452367 -38962875 - AluSx SINE Alu -13 299 1 192 321 54 92 chr6 143452367 143452583 -38962659 + L2 LINE L2 2714 2912 -402 1300 190 72 4 chr6 143452676 143452955 -38962287 + Charlie4a DNA MER1_type 20 317 -191 1997 122 27 10 chr6 143452961 143453255 -38961987 + AluSg SINE Alu 1 299 -11 1696 161 13 10 chr6 143453265 143453575 -38961667 + L1MB3 LINE L1 5873 6183 0 201 262 124 35 chr6 143453789 143453934 -38961308 - L2 LINE L2 -1168 2146 1989 746 40 30 0 chr6 143453954 143454054 -38961188 + (TTCTC)n Simple_repeat Simple_repeat 4 106 0 1784 148 3 25 chr6 143454054 143454337 -38960905 - AluJo SINE Alu -27 285 9 553 206 0 62 chr6 143455085 143455186 -38960056 - MIR SINE MIR -1 261 171 2083 137 0 0 chr6 143455186 143455503 -38959739 - AluSx SINE Alu 0 317 1 553 206 0 62 chr6 143455503 143455560 -38959682 - MIR SINE MIR -91 171 112 1989 113 17 3 chr6 143455560 143455851 -38959391 + AluY SINE Alu 1 295 -16 2023 203 37 25 chr6 143456195 143456679 -38958563 - L1MD3 LINE L1 -67 7928 7439 400 219 89 27 chr6 143456713 143456859 -38958383 + L2 LINE L2 3159 3313 0 1865 140 12 12 chr6 143457164 143457486 -38957756 - L1MA8 LINE L1 -1 6290 5969 1459 207 26 77 chr6 143458544 143458696 -38956546 + MLT1A2 LTR MaLR 4 162 -212 3726 92 12 2 chr6 143458696 143459205 -38956037 + MER75 DNA T2_type 1 514 0 1459 207 26 77 chr6 143459205 143459443 -38955799 + MLT1A2 LTR MaLR 162 374 0 2212 99 20 7 chr6 143459852 143460145 -38955097 + AluSx SINE Alu 1 297 -15 3137 82 42 7 chr6 143460546 143460975 -38954267 - MLT2A1 LTR ERVL 0 444 1 234 143 0 0 chr6 143461262 143461297 -38953945 - MLT1J1 LTR MaLR -123 323 289 500 289 46 41 chr6 143461309 143461506 -38953736 - MLT1I LTR MaLR -205 204 7 746 133 0 0 chr6 143461729 143461834 -38953408 + MER41B-int LTR ERV1 5842 5946 0 3399 148 11 4 chr6 143461836 143462375 -38952867 + MER41B LTR ERV1 3 545 -90 193 353 74 11 chr6 143462522 143462712 -38952530 - L2 LINE L2 -1220 2094 1893 205 364 25 31 chr6 143462931 143463048 -38952194 + L2 LINE L2 2553 2670 -644 1868 278 28 11 chr6 143463048 143463581 -38951661 - MLT1F LTR MaLR 0 542 1 205 364 25 31 chr6 143463581 143463625 -38951617 + L2 LINE L2 2670 2713 -601 293 364 78 48 chr6 143463906 143464474 -38950768 - L2 LINE L2 -2277 1037 453 2282 112 133 16 chr6 143464623 143465006 -38950236 + MSTA LTR MaLR 1 428 0 206 214 0 0 chr6 143465023 143465065 -38950177 + (TG)n Simple_repeat Simple_repeat 2 43 0 673 234 31 30 chr6 143465453 143465709 -38949533 + L1MD3 LINE L1 7572 7995 0 2191 125 3 7 chr6 143465915 143466220 -38949022 + AluSx SINE Alu 1 304 -8 284 216 78 95 chr6 143466240 143466356 -38948886 + L2 LINE L2 3200 3313 0 587 307 79 4 chr6 143466728 143466956 -38948286 - MIR SINE MIR 0 262 18 852 194 29 58 chr6 143466958 143467096 -38948146 - L1ME1 LINE L1 0 6166 6034 1987 147 24 0 chr6 143467096 143467388 -38947854 - AluSq SINE Alu -14 299 1 852 194 29 58 chr6 143467388 143467455 -38947787 - L1ME1 LINE L1 -132 6034 5967 2756 55 3 0 chr6 143467458 143467801 -38947441 + LTR14A LTR ERVK 1 344 0 2045 130 46 0 chr6 143467801 143468147 -38947095 + HERVK14 LTR ERVK 1 362 -5583 8099 48 12 2 chr6 143469728 143470759 -38944483 + HERVK14 LTR ERVK 1828 2868 -3077 5757 61 42 14 chr6 143470743 143471550 -38943692 + HERVK14 LTR ERVK 4930 5759 -186 * 313 199 0 18 chr6 143471550 143471625 -38943617 + MER41C LTR ERV1 1 61 -493 793 43 0 51 chr6 143471625 143471742 -38943500 + HERVK14 LTR ERVK 5835 5945 0 2585 43 55 0 chr6 143471745 143472071 -38943171 + LTR14A LTR ERVK 1 344 0 1317 210 67 21 chr6 143472071 143472447 -38942795 - L1ME1 LINE L1 -194 5972 5580 206 241 35 11 chr6 143472778 143472865 -38942377 + A-rich Low_complexity Low_complexity 4 92 0 2224 97 3 7 chr6 143472875 143473165 -38942077 + AluSp SINE Alu 25 313 0 190 143 0 0 chr6 143474266 143474294 -38940948 + MIR SINE MIR 114 141 -67 523 256 17 0 chr6 143474321 143474438 -38940804 + MIR SINE MIR 2 120 -142 234 211 0 0 chr6 143474783 143474840 -38940402 - L1PB1 LINE L1 -1022 5124 5068 6237 92 9 5 chr6 143474850 143475854 -38939388 + L1PB1 LINE L1 5141 6148 -3 2006 114 0 40 chr6 143476761 143477059 -38938183 - AluSx SINE Alu -24 288 3 318 354 39 8 chr6 143477516 143477646 -38937596 + MER91A DNA MER1_type 3 136 -60 216 305 76 38 chr6 143478003 143478108 -38937134 - L2 LINE L2 -7 3265 3157 350 310 45 0 chr6 143479806 143479961 -38935281 + L1ME4a LINE L1 5754 5915 -206 2468 190 19 4 chr6 143480368 143480904 -38934338 - L1MC3 LINE L1 -7 7778 7235 209 156 22 22 chr6 143481044 143481089 -38934153 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2015 122 3 14 chr6 143481574 143481905 -38933337 - AluSq SINE Alu 0 328 1 1328 67 77 5 chr6 143482399 143482594 -38932648 + L1PA15 LINE L1 5956 6164 -1 675 188 24 0 chr6 143484763 143484928 -38930314 + CT-rich Low_complexity Low_complexity 4 172 0 2269 129 7 0 chr6 143485161 143485471 -38929771 - AluSx SINE Alu 0 312 1 2347 75 0 0 chr6 143485839 143486131 -38929111 + AluY SINE Alu 2 293 -18 24 53 0 0 chr6 143486273 143486311 -38928931 + AT_rich Low_complexity Low_complexity 1 38 0 716 256 60 30 chr6 143486330 143486564 -38928678 + MIR SINE MIR 14 254 -8 2069 127 0 0 chr6 143486611 143486926 -38928316 - AluSq SINE Alu 0 315 1 252 305 235 15 chr6 143488238 143488438 -38926804 + MIR SINE MIR 19 262 0 204 250 0 44 chr6 143488716 143488784 -38926458 + (TAAA)n Simple_repeat Simple_repeat 3 67 0 259 260 41 48 chr6 143490003 143490149 -38925093 + MLT1K LTR MaLR 428 572 -16 963 199 13 76 chr6 143490254 143490490 -38924752 + AluJo SINE Alu 87 307 -5 24 77 0 0 chr6 143490509 143490561 -38924681 + AT_rich Low_complexity Low_complexity 1 52 0 219 250 0 0 chr6 143490933 143490993 -38924249 + A-rich Low_complexity Low_complexity 1 60 0 373 304 17 62 chr6 143491030 143491087 -38924155 + L2 LINE L2 1702 1760 -1554 1324 100 18 27 chr6 143491087 143491307 -38923935 - L1MA2 LINE L1 -1 6303 6086 373 304 17 62 chr6 143491307 143491489 -38923753 + L2 LINE L2 1760 1930 -1384 2235 111 0 3 chr6 143491489 143491787 -38923455 - AluSq SINE Alu -16 297 1 6210 74 4 12 chr6 143491865 143493414 -38921828 - L1PA8 LINE L1 0 6172 4583 289 240 186 49 chr6 143493511 143493715 -38921527 + L2 LINE L2 2179 2410 -904 1335 192 75 56 chr6 143493766 143494239 -38921003 - L1MDa LINE L1 -3559 2981 2482 201 94 0 0 chr6 143494239 143494271 -38920971 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1335 192 75 56 chr6 143494271 143494538 -38920704 - L1MDa LINE L1 -4058 2482 2221 207 307 23 23 chr6 143494995 143495083 -38920159 + GA-rich Low_complexity Low_complexity 5 92 0 474 239 154 43 chr6 143496921 143497155 -38918087 + MIR SINE MIR 3 262 0 475 315 39 17 chr6 143497222 143497400 -38917842 + MER5A DNA MER1_type 7 188 -1 318 125 0 0 chr6 143497626 143497674 -38917568 - L2 LINE L2 -1 3312 3265 256 331 138 31 chr6 143497714 143497874 -38917368 + L2 LINE L2 2581 2757 -557 1456 175 13 84 chr6 143498313 143498654 -38916588 + AluJo SINE Alu 1 319 0 32 0 0 0 chr6 143498816 143498848 -38916394 + AT_rich Low_complexity Low_complexity 1 32 0 460 304 103 9 chr6 143499008 143499222 -38916020 - MER115 DNA AcHobo -348 345 112 189 256 0 26 chr6 143499285 143499324 -38915918 + L2 LINE L2 3218 3255 -17 13643 207 26 9 chr6 143499872 143504472 -38910770 - L1PB1 LINE L1 -8 7581 2928 395 324 176 20 chr6 143506697 143507003 -38908239 + L3 LINE CR1 921 1274 -303 203 358 55 18 chr6 143507039 143507148 -38908094 + L3 LINE CR1 1392 1504 -73 322 250 0 0 chr6 143507497 143507565 -38907677 + MIR SINE MIR 98 165 -97 2344 107 3 0 chr6 143508383 143508693 -38906549 - AluSp SINE Alu -2 311 1 29 28 0 0 chr6 143508754 143508790 -38906452 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr6 143509084 143509122 -38906120 + AT_rich Low_complexity Low_complexity 1 38 0 374 328 36 104 chr6 143510086 143510336 -38904906 - L2 LINE L2 0 3272 3040 360 0 0 0 chr6 143510381 143510421 -38904821 + (TG)n Simple_repeat Simple_repeat 2 41 0 2475 83 32 3 chr6 143511160 143511508 -38903734 + L1PB2 LINE L1 5792 6149 -2 3402 107 32 4 chr6 143512844 143513019 -38902223 + L1PB1 LINE L1 5606 5775 -376 620 47 0 12 chr6 143513019 143513104 -38902138 + (TA)n Simple_repeat Simple_repeat 2 85 0 3402 107 32 4 chr6 143513104 143513459 -38901783 + L1PB1 LINE L1 5775 6151 0 2689 108 11 0 chr6 143513954 143514325 -38900917 - THE1C LTR MaLR 0 375 1 1151 182 5 5 chr6 143515856 143516065 -38899177 - MER3 DNA MER1_type 0 209 1 221 387 8 16 chr6 143516089 143516213 -38899029 - MIR SINE MIR -67 195 73 1408 255 42 3 chr6 143517009 143517539 -38897703 - L1MCa LINE L1 -3538 3026 2520 2342 197 92 14 chr6 143517758 143518322 -38896920 - L1MD2 LINE L1 -22 6337 5730 2212 206 29 0 chr6 143518356 143518898 -38896344 + L1MC/D LINE L1 5176 5729 -630 1475 282 35 20 chr6 143518939 143519450 -38895792 + MER69 DNA AcHobo 1 519 -707 2998 202 74 58 chr6 143519504 143519675 -38895567 - L1MCa LINE L1 -4599 1965 1798 1864 164 3 3 chr6 143519675 143519981 -38895261 + AluSx SINE Alu 1 306 0 2998 202 74 58 chr6 143519981 143520133 -38895109 - L1MCa LINE L1 -4766 1798 1650 191 36 36 0 chr6 143520133 143520161 -38895081 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1998 143 0 0 chr6 143520163 143520443 -38894799 - AluJo SINE Alu -30 282 3 2998 202 74 58 chr6 143520443 143521329 -38893913 - L1MCa LINE L1 -4914 1650 723 758 197 79 68 chr6 143521342 143521651 -38893591 - L1MCa LINE L1 -5753 305 1 295 268 0 0 chr6 143521666 143521737 -38893505 - L1MD2 LINE L1 -2212 5596 5526 22 99 0 0 chr6 143523185 143523256 -38891986 + AT_rich Low_complexity Low_complexity 1 71 0 554 322 16 43 chr6 143524399 143524657 -38890585 + MIR SINE MIR 2 252 -10 7695 25 0 0 chr6 143526499 143527398 -38887844 + L1PA4 LINE L1 5254 6152 -3 4421 207 30 29 chr6 143527432 143528469 -38886773 + MER45B DNA AcHobo 3 1040 0 2214 109 0 0 chr6 143528832 143529139 -38886103 - AluSx SINE Alu 0 307 1 409 357 36 74 chr6 143529698 143530115 -38885127 + L2 LINE L2 2836 3236 -36 1842 163 122 13 chr6 143530217 143530603 -38884639 - Tigger2a DNA MER2_type 0 434 7 2139 112 24 3 chr6 143530664 143530960 -38884282 - AluSx SINE Alu -10 302 1 253 326 163 0 chr6 143530971 143531063 -38884179 - L3 LINE CR1 -3 1574 1468 23 33 0 0 chr6 143531063 143531093 -38884149 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 143532510 143532531 -38882711 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 143533280 143533306 -38881936 + AT_rich Low_complexity Low_complexity 1 26 0 3380 125 23 18 chr6 143533703 143534264 -38880978 - L1PA16 LINE L1 -17 6149 5586 444 340 35 7 chr6 143534443 143534584 -38880658 + L2 LINE L2 3118 3262 -10 189 171 0 0 chr6 143534592 143534627 -38880615 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 1158 107 0 0 chr6 143534736 143534922 -38880320 - AluSp SINE Alu 0 318 133 351 0 0 0 chr6 143534922 143534961 -38880281 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1725 113 68 11 chr6 143534961 143535227 -38880015 - AluSx SINE Alu -31 281 1 537 284 14 27 chr6 143535257 143535405 -38879837 - MIR3 SINE MIR -32 176 31 2407 87 0 3 chr6 143536003 143536313 -38878929 + AluSg SINE Alu 1 309 -1 994 174 59 68 chr6 143536350 143536672 -38878570 + L1ME2 LINE L1 5836 6154 -10 2117 204 97 52 chr6 143536722 143537353 -38877889 - MLT2F LTR ERVL 0 663 5 3752 218 58 41 chr6 143537354 143539798 -38875444 - ERVL-F LTR ERVL -15 5749 3103 304 244 13 0 chr6 143539834 143539912 -38875330 - ERVL-F LTR ERVL -2895 2869 2791 577 189 25 10 chr6 143539915 143540174 -38875068 - MLT2F LTR ERVL -359 304 1 21 0 0 0 chr6 143540215 143540236 -38875006 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 143540382 143540406 -38874836 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 143541627 143541649 -38873593 + AT_rich Low_complexity Low_complexity 1 22 0 245 51 26 0 chr6 143542090 143542129 -38873113 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 2565 53 0 0 chr6 143542194 143542494 -38872748 + AluY SINE Alu 1 300 -11 254 308 28 56 chr6 143542730 143542873 -38872369 - MIR SINE MIR -79 183 45 180 229 36 0 chr6 143543138 143543221 -38872021 + CT-rich Low_complexity Low_complexity 1 86 0 812 191 7 0 chr6 143543232 143543368 -38871874 - FLAM_C SINE Alu -6 137 1 805 176 122 0 chr6 143543682 143543830 -38871412 + FRAM SINE Alu 1 166 0 2350 88 7 0 chr6 143543907 143544213 -38871029 - AluSg SINE Alu -1 309 2 204 97 0 0 chr6 143544844 143544875 -38870367 + (A)n Simple_repeat Simple_repeat 1 31 0 270 286 49 65 chr6 143546004 143546085 -38869157 + L1ME3A LINE L1 5788 5869 -301 2350 74 0 13 chr6 143546085 143546384 -38868858 + AluY SINE Alu 1 295 -16 270 286 49 65 chr6 143546384 143546487 -38868755 + L1ME3A LINE L1 5869 5969 -201 26 19 0 58 chr6 143546876 143546928 -38868314 + AT_rich Low_complexity Low_complexity 1 49 0 323 211 144 0 chr6 143547278 143547368 -38867874 + MLT1J1 LTR MaLR 26 128 -318 541 261 96 20 chr6 143547500 143547699 -38867543 - MER58C DNA MER1_type -1 214 1 2295 103 3 19 chr6 143548074 143548386 -38866856 + AluSx SINE Alu 1 307 -5 22 70 0 0 chr6 143550450 143550493 -38864749 + AT_rich Low_complexity Low_complexity 1 43 0 2318 103 0 0 chr6 143550502 143550804 -38864438 - AluSx SINE Alu -10 302 1 375 318 122 20 chr6 143551294 143551590 -38863652 + L2 LINE L2 2948 3273 -40 706 241 86 60 chr6 143551594 143551942 -38863300 + MLT1C LTR MaLR 3 359 -108 1820 139 0 58 chr6 143552409 143552719 -38862523 + AluJo SINE Alu 7 298 -14 204 296 0 0 chr6 143552892 143552936 -38862306 + (TG)n Simple_repeat Simple_repeat 1 44 0 2235 104 0 3 chr6 143553497 143553785 -38861457 - AluSq SINE Alu -26 287 1 456 323 75 10 chr6 143554877 143555078 -38860164 + MIR SINE MIR 14 227 -35 197 304 29 49 chr6 143555174 143555276 -38859966 - MIR SINE MIR -113 149 50 255 191 143 0 chr6 143555635 143555698 -38859544 + MIR SINE MIR 42 113 -95 1109 214 88 20 chr6 143555798 143556139 -38859103 - L1ME3A LINE L1 -7 6163 5800 879 188 18 6 chr6 143556155 143556325 -38858917 + MER58B DNA MER1_type 168 339 -2 439 220 94 50 chr6 143556327 143556486 -38858756 - L1ME3A LINE L1 -361 5809 5644 244 311 67 52 chr6 143556536 143556671 -38858571 - MIR3 SINE MIR -57 151 15 191 374 50 10 chr6 143556805 143556904 -38858338 - MIR3 SINE MIR -17 191 89 1732 148 9 95 chr6 143557630 143557968 -38857274 - AluSx SINE Alu -2 310 2 228 248 203 13 chr6 143558055 143558208 -38857034 - L1ME3A LINE L1 -751 5395 5214 356 267 42 65 chr6 143558400 143558737 -38856505 - L1ME3A LINE L1 -1095 5051 4723 218 296 131 62 chr6 143559998 143560174 -38855068 - MIR SINE MIR -20 242 55 1094 175 0 0 chr6 143560536 143560713 -38854529 + AluJb SINE Alu 136 312 0 1538 172 43 51 chr6 143561561 143561934 -38853308 + MLT1A2 LTR MaLR 1 370 -4 1454 160 37 19 chr6 143562158 143562427 -38852815 - AluJb SINE Alu 0 312 39 5533 189 53 40 chr6 143563384 143563714 -38851528 + Charlie1a DNA MER1_type 2 326 -2435 2872 95 23 32 chr6 143563714 143564146 -38851096 - MSTA LTR MaLR 0 428 1 5533 189 53 40 chr6 143564146 143565192 -38850050 + Charlie1a DNA MER1_type 326 1400 -1361 2251 103 0 7 chr6 143565192 143565493 -38849749 - AluSq SINE Alu -12 301 3 5533 189 53 40 chr6 143565493 143565542 -38849700 + Charlie1a DNA MER1_type 1400 1447 -8 702 152 66 2 chr6 143566700 143566952 -38848290 + MLT1A1 LTR MaLR 48 365 0 765 233 43 19 chr6 143567508 143567718 -38847524 + MER58C DNA MER1_type 1 215 0 198 0 0 0 chr6 143568101 143568123 -38847119 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1640 174 24 3 chr6 143568126 143568413 -38846829 - AluJb SINE Alu -19 293 1 217 309 82 0 chr6 143570288 143570398 -38844844 - MIR SINE MIR -107 155 37 232 239 0 0 chr6 143570426 143570472 -38844770 - L2 LINE L2 -2 3311 3266 22 70 0 0 chr6 143570573 143570616 -38844626 + AT_rich Low_complexity Low_complexity 1 43 0 2093 143 3 0 chr6 143570902 143571209 -38844033 + AluSx SINE Alu 4 311 -1 1836 142 3 3 chr6 143571982 143572277 -38842965 - AluJb SINE Alu -17 295 1 33 56 0 0 chr6 143573183 143573237 -38842005 + AT_rich Low_complexity Low_complexity 1 54 0 26 0 0 67 chr6 143573488 143573533 -38841709 + AT_rich Low_complexity Low_complexity 1 42 0 204 67 0 0 chr6 143573924 143573954 -38841288 + (TA)n Simple_repeat Simple_repeat 2 31 0 2320 92 3 13 chr6 143573961 143574276 -38840966 - AluSx SINE Alu 0 312 1 350 189 0 14 chr6 143574276 143574345 -38840897 - AluJ/FRAM SINE Alu -5 297 230 314 97 69 0 chr6 143574726 143574798 -38840444 + GA-rich Low_complexity Low_complexity 2 78 0 2392 87 6 10 chr6 143574926 143575238 -38840004 - AluSq SINE Alu -2 311 1 1998 144 0 3 chr6 143575963 143576268 -38838974 + AluSc SINE Alu 1 304 -5 2812 7 0 0 chr6 143576353 143576659 -38838583 - AluYa5 SINE Alu -5 306 1 208 200 17 83 chr6 143576889 143576949 -38838293 + L2 LINE L2 3211 3266 -6 405 330 85 6 chr6 143577100 143577276 -38837966 + MIR SINE MIR 48 237 -25 2203 134 3 0 chr6 143577486 143577793 -38837449 + AluSx SINE Alu 1 308 -4 750 151 0 50 chr6 143577815 143577954 -38837288 + FLAM_C SINE Alu 1 132 -1 1815 191 103 68 chr6 143578096 143578432 -38836810 - L1ME2 LINE L1 -36 6128 5805 501 86 0 0 chr6 143578432 143578502 -38836740 - L1MA2 LINE L1 -7 6297 6228 1815 191 103 68 chr6 143578502 143578797 -38836445 - L1ME2 LINE L1 -359 5805 5475 7688 242 56 45 chr6 143578808 143579632 -38835610 - L1MEc LINE L1 -605 5628 4815 3875 186 79 51 chr6 143579632 143580472 -38834770 + MER21B LTR ERV1 1 863 0 7688 242 56 45 chr6 143580472 143580500 -38834742 - L1MEc LINE L1 -1418 4815 4789 2088 146 7 0 chr6 143580500 143580795 -38834447 - AluSx SINE Alu -15 297 1 7688 242 56 45 chr6 143580795 143581085 -38834157 - L1MEc LINE L1 -1444 4789 4504 1750 187 60 25 chr6 143581085 143581438 -38833804 - MLT1A1 LTR MaLR 0 365 1 7688 242 56 45 chr6 143581438 143584109 -38831133 - L1MEc LINE L1 -1729 4504 1802 2231 107 23 7 chr6 143584109 143584417 -38830825 + AluSp SINE Alu 1 313 0 7688 242 56 45 chr6 143584417 143584814 -38830428 - L1MEc LINE L1 -4431 1802 1411 590 289 142 51 chr6 143584936 143585132 -38830110 + L1MC4a LINE L1 3544 3721 -2425 1549 177 28 28 chr6 143585132 143585440 -38829802 + AluJo SINE Alu 1 308 0 590 289 142 51 chr6 143585440 143585665 -38829577 + L1MC4a LINE L1 3721 4013 -2133 245 345 9 0 chr6 143585677 143585793 -38829449 + L1MC4a LINE L1 4076 4192 -1954 6200 93 9 9 chr6 143585807 143586719 -38828523 + L1PA10 LINE L1 5237 6151 -17 225 0 0 0 chr6 143586719 143586744 -38828498 + (CA)n Simple_repeat Simple_repeat 2 26 0 6200 93 9 9 chr6 143586744 143586755 -38828487 + L1PA10 LINE L1 6151 6160 -8 253 307 6 34 chr6 143586976 143587155 -38828087 + L1MC4a LINE L1 4381 4554 -1592 324 308 58 56 chr6 143587314 143587691 -38827551 + L1MC4a LINE L1 4861 5238 -908 1481 240 79 57 chr6 143587772 143587860 -38827382 + L1MC4a LINE L1 5320 5405 -2403 2140 121 0 22 chr6 143587860 143588173 -38827069 + AluSx SINE Alu 6 311 -1 1481 240 79 57 chr6 143588173 143588756 -38826486 + L1MC4a LINE L1 5405 6006 -1802 2181 126 17 0 chr6 143588843 143589144 -38826098 - AluSx SINE Alu -6 306 1 2100 126 0 58 chr6 143589158 143589484 -38825758 - AluSx SINE Alu -5 307 1 485 221 168 34 chr6 143590557 143590706 -38824536 + MER5A DNA MER1_type 9 177 -12 205 273 61 0 chr6 143591363 143591429 -38823813 + MIR SINE MIR 2 71 -191 2143 123 10 10 chr6 143592229 143592537 -38822705 - AluSx SINE Alu -4 308 1 550 296 36 36 chr6 143592804 143593024 -38822218 + MIR SINE MIR 5 224 -38 2019 134 7 13 chr6 143593052 143593357 -38821885 + AluJb SINE Alu 3 305 -7 207 239 0 0 chr6 143593553 143593599 -38821643 - L2 LINE L2 0 3313 3268 728 296 82 63 chr6 143593655 143594042 -38821200 - L2 LINE L2 -809 2505 2108 2246 113 0 0 chr6 143594042 143594351 -38820891 + AluSx SINE Alu 3 311 -1 728 296 82 63 chr6 143594351 143594389 -38820853 - L2 LINE L2 -1206 2108 2072 340 277 189 32 chr6 143594376 143594625 -38820617 - L3 LINE CR1 -134 1443 1156 * 910 136 0 132 chr6 143594989 143595034 -38820208 - AluJo SINE Alu -1 311 262 2245 117 0 0 chr6 143595034 143595332 -38819910 + AluSx SINE Alu 1 298 -14 910 136 0 132 chr6 143595332 143595373 -38819869 - AluJo SINE Alu -50 262 217 1931 125 30 30 chr6 143595373 143595670 -38819572 - AluSq SINE Alu -16 297 1 910 136 0 132 chr6 143595670 143595795 -38819447 - AluJo SINE Alu -95 217 127 2311 68 59 6 chr6 143596485 143596809 -38818433 + L1PA7 LINE L1 5795 6135 -19 977 70 3 45 chr6 143596817 143597105 -38818137 + (TA)n Simple_repeat Simple_repeat 1 275 0 287 347 21 0 chr6 143597112 143597207 -38818035 - MER5B DNA MER1_type -79 99 3 379 288 57 60 chr6 143597546 143597845 -38817397 + MLT1I LTR MaLR 101 398 -11 341 195 41 27 chr6 143598422 143598496 -38816746 + AluJb SINE Alu 2 60 -242 2283 119 0 0 chr6 143598496 143598806 -38816436 - AluSx SINE Alu -2 310 1 1277 212 8 4 chr6 143598871 143599112 -38816130 + AluJb SINE Alu 54 295 -17 38 68 0 0 chr6 143599350 143599423 -38815819 + AT_rich Low_complexity Low_complexity 1 73 0 1868 164 13 0 chr6 143601699 143601998 -38813244 + AluJo SINE Alu 1 303 -9 642 191 0 19 chr6 143601998 143602208 -38813034 + GA-rich Low_complexity Low_complexity 1 206 0 363 222 78 0 chr6 143605501 143605591 -38809651 + L2 LINE L2 3183 3279 -34 22 35 0 0 chr6 143605672 143605701 -38809541 + AT_rich Low_complexity Low_complexity 1 29 0 397 318 17 28 chr6 143606143 143606322 -38808920 - MER5A DNA MER1_type -6 183 7 280 282 72 70 chr6 143606644 143606841 -38808401 - MIR SINE MIR -57 205 9 1760 133 88 0 chr6 143607132 143607395 -38807847 + AluSx SINE Alu 1 286 -26 23 33 0 0 chr6 143607458 143607488 -38807754 + AT_rich Low_complexity Low_complexity 1 30 0 281 151 38 0 chr6 143608112 143608165 -38807077 + AluS SINE Alu 225 279 -23 195 0 0 79 chr6 143608170 143608208 -38807034 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1510 191 3 33 chr6 143608404 143608708 -38806534 - AluJb SINE Alu -17 295 1 207 100 0 0 chr6 143608836 143608866 -38806376 + (T)n Simple_repeat Simple_repeat 1 30 0 238 324 81 18 chr6 143609023 143609134 -38806108 - MIR SINE MIR -65 143 26 230 366 59 0 chr6 143609184 143609285 -38805957 + MIR SINE MIR 46 152 -110 2517 71 0 3 chr6 143609285 143609595 -38805647 - AluSg SINE Alu 0 310 2 396 247 0 0 chr6 143609705 143609794 -38805448 - MLT1J LTR MaLR 0 511 423 2120 126 16 7 chr6 143609794 143610103 -38805139 + AluSx SINE Alu 1 312 0 1573 134 0 4 chr6 143610307 143610538 -38804704 + AluSx SINE Alu 44 273 -39 384 22 0 0 chr6 143610547 143610592 -38804650 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 250 329 25 0 chr6 143610810 143610889 -38804353 - MIR SINE MIR -111 151 71 2128 138 0 0 chr6 143611485 143611782 -38803460 + AluJb SINE Alu 1 297 -15 495 280 67 34 chr6 143611921 143612160 -38803082 + L2 LINE L2 3030 3276 -37 23 0 0 0 chr6 143612163 143612186 -38803056 + AT_rich Low_complexity Low_complexity 1 23 0 621 253 72 122 chr6 143612509 143613210 -38802032 - L2 LINE L2 0 3313 2658 1652 176 25 11 chr6 143613233 143613517 -38801725 + AluJb SINE Alu 1 288 -24 249 182 182 50 chr6 143613544 143613643 -38801599 - L2 LINE L2 -831 2483 2372 221 209 57 114 chr6 143614572 143614595 -38800647 - MIR SINE MIR -11 251 228 1724 177 80 3 chr6 143614595 143614934 -38800308 + MLT1A1 LTR MaLR 1 365 0 221 209 57 114 chr6 143614934 143615015 -38800227 - MIR SINE MIR -34 228 153 438 295 167 29 chr6 143615247 143615589 -38799653 + L1MC4a LINE L1 5625 6013 -1795 839 181 0 0 chr6 143615807 143615940 -38799302 + FLAM_C SINE Alu 1 133 0 33 0 0 0 chr6 143615987 143616020 -38799222 + AT_rich Low_complexity Low_complexity 1 33 0 259 361 120 10 chr6 143616277 143616485 -38798757 - MIR SINE MIR 0 262 32 2092 148 16 0 chr6 143617405 143617710 -38797532 + AluSx SINE Alu 1 310 -2 186 250 0 50 chr6 143617920 143617980 -38797262 - L3 LINE CR1 -241 1336 1280 239 336 123 8 chr6 143619025 143619147 -38796095 + MIR3 SINE MIR 5 140 -68 769 169 48 53 chr6 143619187 143619376 -38795866 + MER5A DNA MER1_type 2 189 0 560 235 95 10 chr6 143619493 143619693 -38795549 + L1ME4a LINE L1 5610 5826 -295 255 299 27 75 chr6 143619699 143619886 -38795356 + MER5A DNA MER1_type 1 178 -11 * 425 239 131 88 chr6 143619869 143620147 -38795095 + L1ME4a LINE L1 5803 6091 -30 582 154 209 0 chr6 143620219 143620329 -38794913 - AluSq/x SINE Alu -178 135 3 1985 146 76 22 chr6 143620373 143620729 -38794513 - THE1C LTR MaLR 0 375 1 434 218 183 7 chr6 143620962 143621104 -38794138 + MER45C DNA AcHobo 98 264 -689 551 212 123 41 chr6 143621145 143621315 -38793927 + MER45C DNA AcHobo 662 845 -108 527 278 28 14 chr6 143622597 143622741 -38792501 + MER115 DNA AcHobo 100 245 -448 286 180 60 0 chr6 143622926 143622976 -38792266 + Zaphod DNA AcHobo 3979 4031 0 2060 135 0 13 chr6 143623178 143623538 -38791704 + AluSx SINE Alu 1 356 0 3064 166 20 11 chr6 143624278 143624840 -38790402 - L1MB7 LINE L1 0 6184 5618 934 147 11 78 chr6 143626879 143627030 -38788212 + FRAM SINE Alu 1 132 -180 1773 104 42 0 chr6 143627030 143627270 -38787972 - AluSx SINE Alu -62 250 1 934 147 11 78 chr6 143627270 143627309 -38787933 + FRAM SINE Alu 132 172 -4 238 224 86 0 chr6 143627365 143627423 -38787819 + MLT1J2 LTR MaLR 78 140 -310 2050 109 0 51 chr6 143628338 143628649 -38786593 + AluSx SINE Alu 15 309 -3 193 367 20 20 chr6 143628710 143628808 -38786434 - MER5A DNA MER1_type -26 163 66 1289 200 4 0 chr6 143628808 143629043 -38786199 - AluJb SINE Alu -4 308 73 405 153 0 0 chr6 143629043 143629102 -38786140 + AluSp/q SINE Alu 172 230 -83 * 502 167 0 0 chr6 143629097 143629169 -38786073 - AluJb SINE Alu -239 73 2 194 135 77 19 chr6 143629238 143629290 -38785952 + MER5A DNA MER1_type 21 75 -114 * 261 236 236 0 chr6 143629282 143629371 -38785871 - MER5A DNA MER1_type -77 112 3 480 283 17 0 chr6 143629409 143629529 -38785713 - MIR SINE MIR -70 138 17 640 211 0 32 chr6 143629702 143629825 -38785417 + MER63 DNA MER1_type 1 745 -91 319 141 250 0 chr6 143630485 143630549 -38784693 + MADE1 DNA Mariner 1 80 0 1101 185 0 0 chr6 143630912 143631090 -38784152 + AluJb SINE Alu 125 302 -10 2208 125 3 0 chr6 143631480 143631791 -38783451 + AluSx SINE Alu 1 312 0 2201 135 14 46 chr6 143631891 143632239 -38783003 - MER1B DNA MER1_type 0 337 1 1859 132 0 4 chr6 143632380 143632646 -38782596 - AluSx SINE Alu -5 307 43 212 143 0 0 chr6 143633270 143633323 -38781919 + (TCTCTG)n Simple_repeat Simple_repeat 1 53 0 1156 150 21 26 chr6 143633881 143634074 -38781168 - AluJb SINE Alu -120 192 1 187 321 107 18 chr6 143634587 143634699 -38780543 + L2 LINE L2 3137 3258 -14 4509 181 54 48 chr6 143637027 143637428 -38777814 - L1MC3 LINE L1 -686 7099 6702 2321 92 3 3 chr6 143637428 143637734 -38777508 + AluSx SINE Alu 1 306 -6 4509 181 54 48 chr6 143637734 143638321 -38776921 - L1MC3 LINE L1 -1083 6702 6105 3416 152 51 47 chr6 143638319 143638737 -38776505 + L1MC3 LINE L1 7100 7515 -270 * 1938 145 3 0 chr6 143638737 143639064 -38776178 - AluSx SINE Alu 0 328 1 3416 152 51 47 chr6 143639064 143639143 -38776099 + L1MC3 LINE L1 7515 7592 -193 2336 113 0 0 chr6 143639143 143639453 -38775789 + AluSx SINE Alu 1 310 -2 3416 152 51 47 chr6 143639453 143639636 -38775606 + L1MC3 LINE L1 7592 7785 0 931 122 54 0 chr6 143640118 143640265 -38774977 - L1MB4 LINE L1 -1 6179 6025 244 186 136 0 chr6 143640270 143640329 -38774913 - L1MB4 LINE L1 -395 5785 5719 1451 191 18 32 chr6 143640385 143640662 -38774580 + AluJb SINE Alu 1 273 -39 999 257 41 95 chr6 143641368 143641451 -38773791 + Zaphod DNA AcHobo 1 87 -3944 216 0 0 0 chr6 143641451 143641475 -38773767 + (CA)n Simple_repeat Simple_repeat 1 24 0 999 257 41 95 chr6 143641475 143641649 -38773593 + Zaphod DNA AcHobo 87 230 -3801 2360 77 0 23 chr6 143641649 143641959 -38773283 + AluSc SINE Alu 5 307 -2 999 257 41 95 chr6 143641959 143642112 -38773130 + Zaphod DNA AcHobo 230 390 -3641 1748 158 39 1 chr6 143642113 143642442 -38772800 + MLT1B LTR MaLR 1 390 0 376 200 276 0 chr6 143642442 143642536 -38772706 + Zaphod DNA AcHobo 387 509 -3522 2021 269 64 42 chr6 143642557 143643200 -38772042 + MER115 DNA AcHobo 37 693 0 * 3111 194 52 18 chr6 143643200 143644021 -38771221 + Zaphod DNA AcHobo 502 1350 -2681 1349 203 17 13 chr6 143644423 143644723 -38770519 + MER33 DNA MER1_type 11 311 -13 438 265 22 154 chr6 143644936 143645172 -38770070 + L2 LINE L2 2986 3169 -103 2064 130 3 0 chr6 143645172 143645457 -38769785 - AluSx SINE Alu -18 294 9 438 265 22 154 chr6 143645457 143645544 -38769698 + L2 LINE L2 3169 3266 -6 898 249 6 0 chr6 143645698 143645875 -38769367 + MER45A DNA AcHobo 1 178 0 1296 170 52 109 chr6 143646350 143646795 -38768447 + AluJo SINE Alu 1 426 0 212 300 25 25 chr6 143646809 143646889 -38768353 - L2 LINE L2 -787 2527 2448 184 290 122 30 chr6 143647195 143647291 -38767951 - MIR SINE MIR -70 192 79 1698 192 0 19 chr6 143647291 143647608 -38767634 + AluJo SINE Alu 1 311 -1 184 290 122 30 chr6 143647608 143647642 -38767600 - MIR SINE MIR -183 79 50 558 211 48 116 chr6 143647980 143648231 -38767011 + L2 LINE L2 3080 3313 0 2015 138 0 0 chr6 143648914 143649244 -38765998 - AluSx SINE Alu 0 330 1 2168 109 0 0 chr6 143650413 143650750 -38764492 + AluSx SINE Alu 1 337 0 23 0 0 0 chr6 143650776 143650799 -38764443 + AT_rich Low_complexity Low_complexity 1 23 0 218 304 78 17 chr6 143650991 143651106 -38764136 - L2 LINE L2 -12 3301 3180 371 277 99 40 chr6 143651477 143651679 -38763563 - MIR SINE MIR -2 260 47 216 200 75 75 chr6 143652113 143652193 -38763049 - L2 LINE L2 -228 3044 2965 2060 136 16 7 chr6 143652567 143652876 -38762366 - AluSx SINE Alu 0 312 1 474 279 97 84 chr6 143652955 143653181 -38762061 + MIR SINE MIR 34 262 0 2216 126 0 10 chr6 143653653 143653963 -38761279 + AluSx SINE Alu 5 311 -1 216 91 91 0 chr6 143653963 143654018 -38761224 + GA-rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr6 143654206 143654227 -38761015 + AT_rich Low_complexity Low_complexity 1 21 0 1933 167 0 0 chr6 143654335 143654634 -38760608 + AluJb SINE Alu 1 299 -13 637 249 77 60 chr6 143654831 143654912 -38760330 - MIR SINE MIR -13 249 171 1873 152 3 0 chr6 143654912 143655195 -38760047 - AluSx SINE Alu -9 303 20 637 249 77 60 chr6 143655195 143655346 -38759896 - MIR SINE MIR -91 171 13 653 173 0 9 chr6 143656433 143656543 -38758699 + FLAM_A SINE Alu 34 142 0 280 152 30 15 chr6 143658298 143658364 -38756878 + CT-rich Low_complexity Low_complexity 2 68 0 829 164 0 0 chr6 143658393 143658515 -38756727 - AluJb SINE Alu -187 125 4 1565 197 7 20 chr6 143658532 143658827 -38756415 - AluJo SINE Alu -19 293 3 233 216 95 69 chr6 143658889 143659005 -38756237 + LTR33A LTR ERVL 71 189 -334 1606 258 16 16 chr6 143659008 143659395 -38755847 + MSTD LTR MaLR 10 396 0 516 188 0 10 chr6 143659402 143659503 -38755739 + MSTD-int LTR MaLR 7 106 -1265 2243 120 7 0 chr6 143659549 143659858 -38755384 - AluSp SINE Alu -2 311 1 499 229 101 34 chr6 143659882 143660061 -38755181 + LTR33 LTR ERVL 331 521 0 891 189 86 11 chr6 143660462 143660637 -38754605 + MER5A DNA MER1_type 1 188 -1 1833 224 28 18 chr6 143661348 143661740 -38753502 + MSTD LTR MaLR 1 396 0 3936 250 31 35 chr6 143661742 143662757 -38752485 + MSTD-int LTR MaLR 2 1012 -723 1993 104 70 0 chr6 143662976 143663246 -38751996 + AluSx SINE Alu 1 289 -23 271 339 53 12 chr6 143664104 143664275 -38750967 + LTR67 LTR ERVL 372 549 -8 308 409 39 0 chr6 143664502 143664629 -38750613 + L2 LINE L2 3121 3252 -20 317 321 195 0 chr6 143664713 143664872 -38750370 - MIR SINE MIR -48 214 25 222 318 0 0 chr6 143665404 143665467 -38749775 - L2 LINE L2 0 3313 3251 23 0 0 0 chr6 143665924 143665947 -38749295 + AT_rich Low_complexity Low_complexity 1 23 0 2243 113 0 0 chr6 143665947 143666256 -38748986 - AluSg1 SINE Alu 0 309 1 670 118 31 14 chr6 143668222 143668519 -38746723 + (TA)n Simple_repeat Simple_repeat 1 302 0 234 80 0 20 chr6 143668561 143668611 -38746631 - LTR66 LTR ERVL -172 438 390 999 157 24 0 chr6 143668688 143668854 -38746388 - AluJo SINE Alu -29 283 114 1030 187 14 29 chr6 143668911 143669120 -38746122 - L1MB5 LINE L1 0 6174 5969 1212 106 6 0 chr6 143669169 143669329 -38745913 + AluSx SINE Alu 1 161 -151 1596 120 4 0 chr6 143669329 143669554 -38745688 + AluSq SINE Alu 77 302 -11 396 319 108 52 chr6 143669886 143669918 -38745324 - L2 LINE L2 -1696 1618 1589 1101 105 0 0 chr6 143669918 143670080 -38745162 + (GGAA)n Simple_repeat Simple_repeat 1 162 0 396 319 108 52 chr6 143670080 143670586 -38744656 - L2 LINE L2 -1725 1589 1050 2200 114 3 7 chr6 143670751 143671057 -38744185 - AluSq SINE Alu -8 305 1 1863 117 102 3 chr6 143671081 143671364 -38743878 + AluSx SINE Alu 1 311 -1 402 309 50 17 chr6 143671748 143671929 -38743313 + MIR SINE MIR 20 206 -56 1891 294 31 7 chr6 143672298 143672853 -38742389 + MER69B DNA AcHobo 30 597 -629 1734 173 0 7 chr6 143672904 143673193 -38742049 + AluJb SINE Alu 17 303 -9 2089 209 37 18 chr6 143673196 143673296 -38741946 + MER69B DNA AcHobo 589 686 -1840 1654 183 0 63 chr6 143673296 143673629 -38741613 - AluJb SINE Alu 0 312 1 2089 209 37 18 chr6 143673629 143674074 -38741168 + MER69B DNA AcHobo 686 1148 -1378 1852 171 52 30 chr6 143674074 143674437 -38740805 - THE1C LTR MaLR -4 371 1 2089 209 37 18 chr6 143674437 143674459 -38740783 + MER69B DNA AcHobo 1148 1168 -58 1693 138 132 0 chr6 143674459 143674770 -38740472 - L1MA5A LINE L1 -4 6293 5942 341 208 14 0 chr6 143674770 143674842 -38740400 + MER69B DNA AcHobo 1150 1222 -4 261 0 0 0 chr6 143675174 143675203 -38740039 + (A)n Simple_repeat Simple_repeat 1 29 0 674 143 8 0 chr6 143675287 143675406 -38739836 + (TAGA)n Simple_repeat Simple_repeat 4 123 0 1788 173 10 10 chr6 143676150 143676643 -38738599 + AluSx SINE Alu 1 312 0 1499 11 0 11 chr6 143676436 143676811 -38738431 + (GAAA)n Simple_repeat Simple_repeat 1 373 0 242 29 29 0 chr6 143677387 143677422 -38737820 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 792 328 97 21 chr6 143677914 143678380 -38736862 - LTR33 LTR ERVL -1 520 20 598 250 43 27 chr6 143678603 143678791 -38736451 - MER112 DNA MER1_type -5 255 65 29 28 0 0 chr6 143678815 143678851 -38736391 + AT_rich Low_complexity Low_complexity 1 36 0 2300 104 0 16 chr6 143679061 143679368 -38735874 + AluSx SINE Alu 1 302 -10 23 33 0 0 chr6 143679791 143679821 -38735421 + AT_rich Low_complexity Low_complexity 1 30 0 1736 186 3 7 chr6 143680204 143680511 -38734731 + AluJo SINE Alu 1 306 -6 624 257 47 87 chr6 143680816 143681092 -38734150 - MLT1L LTR MaLR -87 528 264 517 284 114 30 chr6 143681150 143681386 -38733856 - MLT1L LTR MaLR -359 256 1 631 189 82 0 chr6 143682038 143682160 -38733082 + FLAM_C SINE Alu 10 141 -2 274 313 62 8 chr6 143682366 143682494 -38732748 - MIR SINE MIR -1 261 127 236 288 123 49 chr6 143682934 143683097 -38732145 - MLT1K LTR MaLR -411 177 3 933 152 0 0 chr6 143683139 143683271 -38731971 + AluJb SINE Alu 1 132 -180 2277 96 0 10 chr6 143683855 143684146 -38731096 + AluSc SINE Alu 1 288 -21 480 285 19 38 chr6 143684687 143684845 -38730397 + MIR SINE MIR 16 170 -92 318 26 0 0 chr6 143684846 143684885 -38730357 + (TG)n Simple_repeat Simple_repeat 1 39 0 312 48 0 0 chr6 143684884 143684926 -38730316 + (GA)n Simple_repeat Simple_repeat 1 42 0 * 336 162 59 158 chr6 143685051 143685273 -38729969 + L1ME4a LINE L1 5922 6121 0 181 324 28 41 chr6 143685500 143685645 -38729597 + MIR SINE MIR 82 224 -38 23 33 0 0 chr6 143685684 143685714 -38729528 + AT_rich Low_complexity Low_complexity 1 30 0 3520 67 0 0 chr6 143685870 143686301 -38728941 - L1PA6 LINE L1 -1 6153 5723 1257 200 32 63 chr6 143686589 143686789 -38728453 - AluJo SINE Alu -7 305 117 830 83 8 0 chr6 143686789 143686909 -38728333 + (TTCC)n Simple_repeat Simple_repeat 4 124 0 1257 200 32 63 chr6 143686909 143687023 -38728219 - AluJo SINE Alu -195 117 1 182 37 37 0 chr6 143687027 143687054 -38728188 + (TTG)n Simple_repeat Simple_repeat 2 29 0 458 221 184 60 chr6 143687216 143687483 -38727759 - MER102b DNA MER1_type -8 333 34 402 159 29 0 chr6 143688077 143688146 -38727096 - FAM SINE Alu -21 164 94 1861 171 3 3 chr6 143688323 143688628 -38726614 - AluSx SINE Alu -7 305 1 759 256 36 24 chr6 143688760 143689010 -38726232 - MER112 DNA MER1_type -3 253 1 297 128 0 0 chr6 143689561 143689608 -38725634 + (CA)n Simple_repeat Simple_repeat 2 48 0 219 306 16 0 chr6 143689939 143690001 -38725241 - MIR3 SINE MIR -21 187 125 2154 117 0 3 chr6 143690016 143690314 -38724928 + AluSg SINE Alu 1 297 -13 226 222 20 131 chr6 143690708 143690807 -38724435 - L2 LINE L2 0 3272 3185 23 33 0 0 chr6 143690932 143690962 -38724280 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr6 143691126 143691155 -38724087 + (A)n Simple_repeat Simple_repeat 1 29 0 358 316 36 22 chr6 143691195 143691334 -38723908 + MIR SINE MIR 47 187 -75 429 250 9 26 chr6 143691372 143691488 -38723754 + MIR SINE MIR 95 208 -54 1572 170 14 14 chr6 143692208 143692512 -38722730 + AluJo SINE Alu 1 304 0 198 0 0 0 chr6 143692573 143692595 -38722647 + (T)n Simple_repeat Simple_repeat 1 22 0 228 156 16 31 chr6 143692832 143692896 -38722346 + GA-rich Low_complexity Low_complexity 2 64 0 1961 126 34 45 chr6 143693434 143693993 -38721249 + MER51A LTR ERV1 1 634 0 201 121 0 0 chr6 143694460 143694493 -38720749 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 2206 101 0 3 chr6 143694925 143695212 -38720030 - AluSx SINE Alu -26 286 1 2108 101 4 0 chr6 143695242 143695510 -38719732 + AluSc SINE Alu 1 269 -40 536 271 79 34 chr6 143695807 143696268 -38718974 - LTR33 LTR ERVL 0 521 2 661 230 0 16 chr6 143696350 143696476 -38718766 + FLAM_C SINE Alu 3 126 -17 240 281 0 0 chr6 143696948 143697005 -38718237 - L2 LINE L2 -39 3233 3177 2419 100 3 0 chr6 143697090 143697400 -38717842 + AluSp SINE Alu 1 311 -2 411 264 146 39 chr6 143697691 143697869 -38717373 - L2 LINE L2 0 3313 3117 311 223 117 11 chr6 143697956 143698050 -38717192 - Charlie8 DNA MER1_type 0 2417 2314 567 304 123 32 chr6 143698179 143698495 -38716747 - L2 LINE L2 -350 2964 2620 999 130 59 24 chr6 143698905 143699074 -38716168 + AluSg/x SINE Alu 130 304 -6 1097 148 0 0 chr6 143700690 143700852 -38714390 + AluJo SINE Alu 136 297 -15 1719 220 71 33 chr6 143701295 143701745 -38713497 + MLT1C LTR MaLR 1 467 0 26 0 0 0 chr6 143701858 143701884 -38713358 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr6 143702301 143702326 -38712916 + (TA)n Simple_repeat Simple_repeat 1 25 0 224 30 30 0 chr6 143702409 143702442 -38712800 + (CA)n Simple_repeat Simple_repeat 2 35 0 2286 101 3 22 chr6 143702884 143703200 -38712042 - AluSx SINE Alu -2 310 1 1323 118 0 0 chr6 143704460 143704638 -38710604 + AluSg/x SINE Alu 132 309 -1 1963 134 43 7 chr6 143704958 143705257 -38709985 + AluSg SINE Alu 1 310 0 683 246 29 18 chr6 143705514 143705685 -38709557 + MER5B DNA MER1_type 4 176 -2 2390 86 0 3 chr6 143705692 143705993 -38709249 + AluY SINE Alu 1 300 -11 1255 192 125 29 chr6 143706610 143706923 -38708319 - MER2 DNA MER2_type -1 343 1 229 250 0 0 chr6 143707005 143707053 -38708189 - MER5A DNA MER1_type 0 189 142 23 0 0 0 chr6 143707229 143707252 -38707990 + AT_rich Low_complexity Low_complexity 1 23 0 899 131 0 0 chr6 143707252 143707374 -38707868 + AluSq/x SINE Alu 1 122 -191 204 40 0 0 chr6 143707374 143707399 -38707843 + (TAA)n Simple_repeat Simple_repeat 2 26 0 353 243 135 27 chr6 143708337 143708448 -38706794 - MIR SINE MIR -135 127 5 186 43 0 0 chr6 143708630 143708653 -38706589 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1503 150 109 29 chr6 143708694 143708968 -38706274 + AluJb SINE Alu 1 296 -16 2819 116 78 0 chr6 143709723 143710120 -38705122 - MSTA LTR MaLR 0 428 1 2323 142 95 45 chr6 143710319 143710762 -38704480 + MLT1C LTR MaLR 1 465 -2 183 42 0 0 chr6 143710975 143710999 -38704243 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1087 299 116 19 chr6 143711178 143711698 -38703544 - L2 LINE L2 -5 3308 2840 2423 85 0 0 chr6 143711698 143711993 -38703249 - AluSq SINE Alu -18 295 1 1087 299 116 19 chr6 143711993 143712339 -38702903 - L2 LINE L2 -473 2840 2346 299 176 255 29 chr6 143712689 143712791 -38702451 - MIR SINE MIR -57 205 81 1314 253 75 94 chr6 143712794 143713328 -38701914 + MER69 DNA AcHobo 1 524 -2002 917 154 64 170 chr6 143713329 143713449 -38701793 + MER69 DNA AcHobo 2179 2310 -216 2188 121 0 0 chr6 143713449 143713746 -38701496 + AluSq SINE Alu 3 299 -14 917 154 64 170 chr6 143713746 143714001 -38701241 + MER69 DNA AcHobo 2310 2514 -12 2632 45 0 0 chr6 143714715 143715024 -38700218 + AluY SINE Alu 1 309 -2 8178 79 6 3 chr6 143716477 143717531 -38697711 - MER11C LTR ERVK -14 1057 1 1578 203 23 3 chr6 143717651 143717956 -38697286 + AluJb SINE Alu 1 311 -1 1450 183 45 80 chr6 143718086 143718231 -38697011 + L1MC4a LINE L1 6220 6369 -1439 2190 108 3 3 chr6 143718231 143718519 -38696723 + AluSq SINE Alu 1 288 -25 1450 183 45 80 chr6 143718519 143718772 -38696470 + L1MC4a LINE L1 6369 6604 -1204 369 316 61 103 chr6 143720218 143720693 -38694549 - L2 LINE L2 0 3272 2818 2174 132 0 0 chr6 143721670 143721974 -38693268 - AluSx SINE Alu -8 304 1 851 167 27 27 chr6 143722229 143722415 -38692827 + MER53 DNA DNA 2 187 -2 21 0 0 0 chr6 143722576 143722597 -38692645 + AT_rich Low_complexity Low_complexity 1 21 0 180 91 68 0 chr6 143722756 143722800 -38692442 + (CTATA)n Simple_repeat Simple_repeat 4 50 0 226 248 105 0 chr6 143722919 143723024 -38692218 + L1ME4a LINE L1 5960 6075 -46 2189 118 20 0 chr6 143723190 143723496 -38691746 - AluSx SINE Alu 0 312 1 1783 181 13 3 chr6 143723551 143723855 -38691387 - AluJb SINE Alu -5 307 1 398 265 147 29 chr6 143725054 143725190 -38690052 + MER5B DNA MER1_type 27 178 0 301 247 146 0 chr6 143726237 143726326 -38688916 + LTR16C LTR ERVL 390 491 0 1616 186 0 33 chr6 143726364 143726670 -38688572 - AluJo SINE Alu -16 296 1 527 312 65 34 chr6 143726790 143727268 -38687974 + L2 LINE L2 2790 3279 -34 2306 89 3 0 chr6 143727307 143727598 -38687644 - AluSp SINE Alu -21 292 1 813 143 7 64 chr6 143727832 143727972 -38687270 - FLAM_A SINE Alu -1 132 1 1686 169 3 57 chr6 143728063 143728377 -38686865 + AluJb SINE Alu 1 297 -15 1323 175 107 25 chr6 143728414 143728694 -38686548 + AluJo SINE Alu 1 303 -9 2126 113 0 7 chr6 143728711 143729017 -38686225 + AluSx SINE Alu 1 304 0 815 136 0 43 chr6 143729267 143729407 -38685835 - AluJo SINE Alu -178 134 1 367 311 91 98 chr6 143729498 143729938 -38685304 + L2 LINE L2 2827 3263 -9 349 280 60 95 chr6 143730813 143731063 -38684179 - MIR SINE MIR -19 243 3 240 59 0 0 chr6 143731063 143731097 -38684145 + (TC)n Simple_repeat Simple_repeat 1 34 0 2089 140 0 3 chr6 143731256 143731563 -38683679 + AluSx SINE Alu 1 306 -6 664 186 179 14 chr6 143731725 143731865 -38683377 + FRAM SINE Alu 1 162 -14 631 263 181 12 chr6 143732739 143733059 -38682183 + L2 LINE L2 2927 3300 -13 444 37 0 0 chr6 143733059 143733113 -38682129 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 2187 123 7 0 chr6 143733552 143733845 -38681397 + AluSx SINE Alu 1 295 -17 2237 101 3 16 chr6 143734325 143734641 -38680601 - AluSp SINE Alu -1 312 1 22 0 0 0 chr6 143734727 143734749 -38680493 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 143735057 143735079 -38680163 + AT_rich Low_complexity Low_complexity 1 22 0 712 223 142 47 chr6 143735266 143735499 -38679743 + MLT2D LTR ERVL 3 257 -157 805 174 23 0 chr6 143735501 143735633 -38679609 + AluJ SINE Alu 2 136 -176 807 198 0 92 chr6 143735662 143735879 -38679363 + MLT2B1 LTR ERVL 324 520 0 23 54 0 0 chr6 143735929 143735966 -38679276 + AT_rich Low_complexity Low_complexity 1 37 0 660 61 0 0 chr6 143736026 143736108 -38679134 - L1MA1 LINE L1 -4 6298 6217 1902 152 17 3 chr6 143736214 143736504 -38678738 - AluSx SINE Alu -18 294 1 293 287 35 0 chr6 143736512 143736599 -38678643 - MIR SINE MIR -1 261 172 787 183 0 29 chr6 143737500 143737637 -38677605 + AluJo SINE Alu 1 133 -169 864 209 0 0 chr6 143737685 143737843 -38677399 + AluJo SINE Alu 123 280 -32 2214 112 0 3 chr6 143737843 143738146 -38677096 - AluSq SINE Alu -11 302 1 1683 169 20 10 chr6 143738401 143738696 -38676546 - AluJo SINE Alu -10 302 5 1226 138 0 0 chr6 143738736 143738910 -38676332 + AluSg/x SINE Alu 132 305 -5 351 0 0 0 chr6 143739107 143739146 -38676096 + (CA)n Simple_repeat Simple_repeat 2 40 0 476 264 82 22 chr6 143739416 143739598 -38675644 + MER102b DNA MER1_type 103 295 -46 1537 110 0 23 chr6 143739623 143739879 -38675363 - AluSg/x SINE Alu 0 319 69 1031 233 31 4 chr6 143740058 143740286 -38674956 - MIR SINE MIR -26 236 3 937 158 0 0 chr6 143740327 143740460 -38674782 + FLAM_C SINE Alu 1 133 0 28 0 0 0 chr6 143740460 143740488 -38674754 + AT_rich Low_complexity Low_complexity 1 28 0 186 406 15 23 chr6 143740719 143740852 -38674390 + L2 LINE L2 2554 2685 -629 419 314 47 0 chr6 143741491 143741663 -38673579 - MIR SINE MIR -3 259 80 85 42 0 14 chr6 143742061 143742172 -38673070 + AT_rich Low_complexity Low_complexity 1 111 -29 1985 162 0 3 chr6 143742172 143742481 -38672761 - AluSg SINE Alu -2 308 1 85 42 0 14 chr6 143742481 143742511 -38672731 + AT_rich Low_complexity Low_complexity 111 140 0 22 56 0 0 chr6 143742732 143742768 -38672474 + AT_rich Low_complexity Low_complexity 1 36 0 363 44 0 0 chr6 143742990 143743035 -38672207 + (TA)n Simple_repeat Simple_repeat 1 45 0 2527 81 0 0 chr6 143743035 143743343 -38671899 - AluSg SINE Alu -2 308 1 556 218 33 37 chr6 143743861 143743995 -38671247 + MIR3 SINE MIR 68 202 -6 1564 174 40 37 chr6 143744241 143744540 -38670702 + AluJo SINE Alu 1 300 -12 495 118 0 0 chr6 143744543 143744628 -38670614 + (GA)n Simple_repeat Simple_repeat 2 86 0 1781 180 0 3 chr6 143744800 143745100 -38670142 - AluJb SINE Alu -12 300 2 302 293 96 69 chr6 143745174 143745727 -38669515 - L1MC/D LINE L1 -688 5478 5257 1745 189 56 17 chr6 143745872 143746232 -38669010 + MLT1A2 LTR MaLR 1 374 0 609 87 10 19 chr6 143746437 143746541 -38668701 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 2109 249 32 32 chr6 143746545 143746568 -38668674 - MLT1G LTR MaLR -18 577 555 2232 108 0 0 chr6 143746568 143746865 -38668377 - AluSx SINE Alu -15 297 1 2109 249 32 32 chr6 143746865 143747378 -38667864 - MLT1G LTR MaLR -40 555 1 278 259 0 0 chr6 143747502 143747556 -38667686 - MIR SINE MIR -160 102 49 1568 178 36 30 chr6 143749565 143749868 -38665374 - AluJo SINE Alu -7 305 1 2084 142 0 7 chr6 143750040 143750350 -38664892 + AluJb SINE Alu 1 308 -4 348 269 8 62 chr6 143750758 143750888 -38664354 - MIR SINE MIR -73 189 67 216 97 0 0 chr6 143751062 143751093 -38664149 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1538 199 11 0 chr6 143751094 143751371 -38663871 - AluJb SINE Alu -32 280 1 273 317 12 0 chr6 143751612 143751694 -38663548 - L2 LINE L2 -1 3271 3189 21 0 0 0 chr6 143751774 143751795 -38663447 + AT_rich Low_complexity Low_complexity 1 21 0 181 337 70 0 chr6 143752047 143752133 -38663109 + L2 LINE L2 2968 3059 -213 380 20 20 0 chr6 143752184 143752233 -38663009 + (CA)n Simple_repeat Simple_repeat 1 50 0 1965 146 52 24 chr6 143752234 143752563 -38662679 - MER44D DNA MER2_type -1 608 1 1819 77 7 6 chr6 143752815 143753108 -38662134 - THE1C LTR MaLR -1 374 1 680 198 25 75 chr6 143753280 143753445 -38661797 - L1ME1 LINE L1 0 6164 6013 279 114 0 0 chr6 143753937 143753981 -38661261 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 204 229 12 72 chr6 143753985 143754068 -38661174 - MIR SINE MIR -61 147 70 195 129 0 0 chr6 143754707 143754738 -38660504 + (A)n Simple_repeat Simple_repeat 1 31 0 204 317 0 12 chr6 143754853 143754935 -38660307 + CT-rich Low_complexity Low_complexity 1 81 0 261 0 0 0 chr6 143756109 143756138 -38659104 + (T)n Simple_repeat Simple_repeat 1 29 0 879 160 0 0 chr6 143756993 143757124 -38658118 - FLAM_C SINE Alu -2 131 1 697 251 109 0 chr6 143758238 143758421 -38656821 - MIR SINE MIR -9 253 51 265 301 14 0 chr6 143759168 143759241 -38656001 - MIR3 SINE MIR -15 193 120 596 158 102 55 chr6 143759491 143759509 -38655733 - AluJo SINE Alu -178 134 118 189 94 0 0 chr6 143759509 143759541 -38655701 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 596 158 102 55 chr6 143759541 143759649 -38655593 - AluJo SINE Alu -194 118 2 874 241 15 64 chr6 143759722 143759809 -38655433 - MIR SINE MIR -2 260 170 2109 131 0 0 chr6 143759809 143760106 -38655136 + AluSx SINE Alu 1 297 -15 874 241 15 64 chr6 143760106 143760283 -38654959 - MIR SINE MIR -92 170 9 493 261 186 6 chr6 143760620 143760781 -38654461 - MIR SINE MIR -40 222 33 201 39 0 0 chr6 143760893 143760919 -38654323 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2034 120 7 26 chr6 143761212 143761521 -38653721 - AluSx SINE Alu -9 303 1 2107 137 0 0 chr6 143761994 143762300 -38652942 + AluSx SINE Alu 1 306 -6 258 125 0 0 chr6 143763476 143763524 -38651718 + (GGA)n Simple_repeat Simple_repeat 1 48 0 218 81 27 0 chr6 143763920 143763957 -38651285 + (TC)n Simple_repeat Simple_repeat 2 39 0 2170 117 0 0 chr6 143764026 143764324 -38650918 + AluSx SINE Alu 2 299 -13 336 234 126 27 chr6 143764873 143764984 -38650258 + L2 LINE L2 3191 3312 -1 2020 173 9 0 chr6 143765116 143765445 -38649797 - MER2 DNA MER2_type -13 332 1 1628 153 68 7 chr6 143766075 143766356 -38648886 + AluJb SINE Alu 1 298 -14 2406 83 0 10 chr6 143766443 143766744 -38648498 - AluSx SINE Alu -14 298 1 259 294 128 18 chr6 143766828 143766937 -38648305 + L2 LINE L2 3184 3304 -9 912 235 0 0 chr6 143767071 143767233 -38648009 + FRAM SINE Alu 1 162 -4 1339 149 0 0 chr6 143767293 143767487 -38647755 - AluSg/x SINE Alu -14 298 105 2050 113 3 26 chr6 143767495 143767806 -38647436 - AluSq SINE Alu -7 306 3 626 236 0 0 chr6 143768150 143768273 -38646969 - AluJo/FRAM SINE Alu 0 312 190 1538 122 113 0 chr6 143768274 143768512 -38646730 - AluSq SINE Alu -48 265 1 755 268 60 50 chr6 143768552 143768954 -38646288 - MLT1H1 LTR MaLR -7 542 99 180 0 0 0 chr6 143768954 143768974 -38646268 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 755 268 60 50 chr6 143768974 143769045 -38646197 - MLT1H1 LTR MaLR -450 99 30 1002 176 0 16 chr6 143769068 143769250 -38645992 - FRAM SINE Alu 0 176 1 2414 76 3 0 chr6 143769468 143769770 -38645472 - AluY SINE Alu -8 303 1 186 152 0 121 chr6 143769770 143769825 -38645417 + MIR SINE MIR 113 160 -102 440 148 0 0 chr6 143769828 143769889 -38645353 + AluS SINE Alu 2 62 -256 1570 136 11 3 chr6 143770688 143771056 -38644186 - L1MC1 LINE L1 0 6333 5902 2202 118 23 0 chr6 143771761 143772065 -38643177 - AluSp SINE Alu -2 311 1 1246 203 62 47 chr6 143772108 143772384 -38642858 - AluJo SINE Alu -32 280 1 630 208 31 0 chr6 143772702 143772832 -38642410 - MER58B DNA MER1_type -12 329 196 1912 110 0 15 chr6 143772834 143773098 -38642144 - AluSq SINE Alu -53 260 1 184 183 42 127 chr6 143773196 143773267 -38641975 - L2 LINE L2 -15 3298 3234 1023 168 0 17 chr6 143773446 143773619 -38641623 - AluJb SINE Alu -8 304 135 225 0 0 0 chr6 143773619 143773644 -38641598 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 299 197 127 14 chr6 143773653 143773724 -38641518 - AluJ/FLAM SINE Alu -210 92 14 2220 114 0 7 chr6 143773724 143774031 -38641211 - AluSx SINE Alu -5 307 3 25 0 0 0 chr6 143774035 143774060 -38641182 + AT_rich Low_complexity Low_complexity 1 25 0 1384 158 99 15 chr6 143774076 143774349 -38640893 + AluJo SINE Alu 1 296 -16 263 299 23 0 chr6 143774686 143774773 -38640469 + MIR SINE MIR 26 114 -94 1912 117 82 10 chr6 143775019 143775310 -38639932 - AluSp SINE Alu 0 313 2 847 91 91 0 chr6 143775311 143775421 -38639821 - 5S rRNA rRNA -1 120 1 324 48 0 0 chr6 143776056 143776098 -38639144 + (CA)n Simple_repeat Simple_repeat 2 43 0 343 332 62 17 chr6 143776279 143776571 -38638671 + L1 LINE L1 2284 2588 -3558 2345 103 0 10 chr6 143776571 143776881 -38638361 + AluSq SINE Alu 1 307 -6 957 196 6 0 chr6 143776896 143777054 -38638188 - FRAM SINE Alu -7 159 1 435 291 60 57 chr6 143777063 143777287 -38637955 + L1MC4a LINE L1 5607 5834 -1974 2437 70 3 3 chr6 143777287 143777587 -38637655 + AluSq SINE Alu 1 300 -13 435 291 60 57 chr6 143777587 143777661 -38637581 + L1MC4a LINE L1 5834 5906 -1902 203 264 0 0 chr6 143778328 143778381 -38636861 + A-rich Low_complexity Low_complexity 3 55 0 1369 120 39 51 chr6 143778789 143779023 -38636219 - AluJo SINE Alu -16 296 66 893 112 0 15 chr6 143779023 143779157 -38636085 + FLAM_C SINE Alu 2 133 0 244 108 27 0 chr6 143779175 143779212 -38636030 - Alu SINE Alu -86 216 179 24 32 0 0 chr6 143779526 143779557 -38635685 + AT_rich Low_complexity Low_complexity 1 31 0 538 108 0 0 chr6 143779815 143779889 -38635353 - AluJ/FRAM SINE Alu -6 306 233 1787 169 0 7 chr6 143780399 143780695 -38634547 + AluJo SINE Alu 1 294 -18 1803 160 10 20 chr6 143781379 143781673 -38633569 + AluJo SINE Alu 1 291 -21 340 295 48 85 chr6 143782825 143783120 -38632122 - L2 LINE L2 -124 3148 2865 1641 120 4 4 chr6 143783769 143784010 -38631232 + AluSg SINE Alu 64 304 -6 23 0 0 0 chr6 143785429 143785452 -38629790 + AT_rich Low_complexity Low_complexity 1 23 0 208 300 67 0 chr6 143785473 143785533 -38629709 + MIR SINE MIR 23 86 -176 1968 123 42 0 chr6 143785575 143785860 -38629382 + AluSx SINE Alu 1 297 -15 2276 110 0 25 chr6 143785999 143786318 -38628924 + AluSq SINE Alu 1 311 -2 1154 167 18 23 chr6 143786662 143786883 -38628359 - AluJo SINE Alu -92 220 1 643 203 57 0 chr6 143787221 143787344 -38627898 + FLAM_A SINE Alu 1 130 -3 2416 82 0 0 chr6 143787380 143787673 -38627569 + AluSq SINE Alu 1 293 -20 2061 95 0 7 chr6 143787684 143787969 -38627273 + L1P3 LINE L1 8 290 -6171 4148 68 14 0 chr6 143787975 143788477 -38626765 + L1PA7 LINE L1 5645 6153 -1 34 24 0 0 chr6 143788477 143788518 -38626724 + AT_rich Low_complexity Low_complexity 1 41 0 2162 96 4 0 chr6 143788787 143789115 -38626127 + AluSp SINE Alu 1 329 0 30 21 0 21 chr6 143789673 143789691 -38625551 + AT_rich Low_complexity Low_complexity 1 18 -29 998 114 0 0 chr6 143789691 143789822 -38625420 + FLAM_C SINE Alu 1 131 -2 30 21 0 21 chr6 143789822 143789851 -38625391 + AT_rich Low_complexity Low_complexity 18 47 0 2362 81 3 3 chr6 143789955 143790252 -38624990 - AluSx SINE Alu -15 297 1 2527 59 0 0 chr6 143790536 143790839 -38624403 + AluY SINE Alu 1 303 -8 724 165 74 0 chr6 143790976 143791097 -38624145 + FLAM_C SINE Alu 1 130 -3 1920 157 3 0 chr6 143791119 143791418 -38623824 + AluJb SINE Alu 13 312 0 528 286 69 30 chr6 143791772 143791975 -38623267 - MIR SINE MIR 0 262 52 2255 112 0 0 chr6 143792142 143792446 -38622796 - AluSx SINE Alu -8 304 1 319 326 10 10 chr6 143792866 143792964 -38622278 - MIR3 SINE MIR -1 207 110 217 246 70 0 chr6 143794132 143794189 -38621053 + MIR3 SINE MIR 141 201 -7 24 32 0 0 chr6 143794743 143794774 -38620468 + AT_rich Low_complexity Low_complexity 1 31 0 2105 105 7 7 chr6 143794775 143795061 -38620181 - AluSx SINE Alu -25 287 2 1975 166 0 6 chr6 143795099 143795413 -38619829 + AluSx SINE Alu 1 312 0 1722 163 18 4 chr6 143795820 143796097 -38619145 - AluJb SINE Alu -21 291 11 2018 108 7 11 chr6 143796581 143796914 -38618328 + AluSq SINE Alu 1 332 0 33 0 0 0 chr6 143796954 143796987 -38618255 + AT_rich Low_complexity Low_complexity 1 33 0 457 337 115 29 chr6 143797205 143797552 -38617690 - L3b LINE CR1 -96 1487 1111 2151 112 7 0 chr6 143797574 143797860 -38617382 - AluSq SINE Alu -25 288 1 2102 140 0 9 chr6 143798023 143798338 -38616904 - AluSx SINE Alu 0 312 1 39 22 0 0 chr6 143799443 143799489 -38615753 + AT_rich Low_complexity Low_complexity 1 46 0 2143 114 0 3 chr6 143799589 143799887 -38615355 - AluSx SINE Alu -15 297 1 2162 124 7 0 chr6 143799918 143800349 -38614893 - AluSg SINE Alu 0 433 1 2309 104 3 0 chr6 143800401 143800698 -38614544 - AluSx SINE Alu -14 298 1 1457 193 0 84 chr6 143801255 143801435 -38613807 - AluJb SINE Alu -18 294 100 2160 118 0 0 chr6 143801435 143801724 -38613518 - AluSx SINE Alu -23 289 1 1457 193 0 84 chr6 143801724 143801750 -38613492 - AluJb SINE Alu -212 100 73 1999 139 26 59 chr6 143801750 143802138 -38613104 + THE1C LTR MaLR 1 375 0 1457 193 0 84 chr6 143802138 143802251 -38612991 - AluJb SINE Alu -239 73 1 2307 58 41 0 chr6 143803326 143803617 -38611625 + AluY SINE Alu 2 304 -7 291 216 75 119 chr6 143803803 143803937 -38611305 - L2 LINE L2 0 3272 3145 2365 89 3 10 chr6 143804201 143804515 -38610727 + AluSx SINE Alu 1 312 0 502 182 25 41 chr6 143804721 143804842 -38610400 + MIR SINE MIR 100 218 -44 2266 102 3 13 chr6 143805022 143805326 -38609916 + AluSx SINE Alu 1 301 -11 1396 157 0 9 chr6 143805468 143805691 -38609551 + AluJo SINE Alu 1 221 -91 1866 148 30 10 chr6 143805735 143806038 -38609204 - AluJb SINE Alu -3 309 1 248 301 49 21 chr6 143806129 143806272 -38608970 - L1M4 LINE L1 -6395 147 1 1631 126 18 138 chr6 143806288 143806659 -38608583 - AluJb SINE Alu 0 330 1 199 245 161 56 chr6 143806737 143806880 -38608362 + MIR SINE MIR 105 262 0 2156 113 3 7 chr6 143807078 143807388 -38607854 - AluSx SINE Alu -3 309 1 2042 114 40 3 chr6 143807417 143807715 -38607527 - AluSc SINE Alu 0 309 1 2483 58 3 0 chr6 143809075 143809369 -38605873 - AluSp SINE Alu -18 295 1 210 274 185 68 chr6 143809480 143809626 -38605616 - MER5B DNA MER1_type -15 163 1 2449 84 0 0 chr6 143809820 143810118 -38605124 + AluSq SINE Alu 1 298 -15 519 271 169 12 chr6 143810482 143810503 -38604739 - L2 LINE L2 -12 3301 3285 2007 147 0 0 chr6 143810503 143810803 -38604439 + AluSx SINE Alu 1 300 -12 519 271 169 12 chr6 143810803 143811076 -38604166 - L2 LINE L2 -28 3285 2920 2166 130 0 0 chr6 143811133 143811434 -38603808 - AluSx SINE Alu -11 301 1 1558 117 0 0 chr6 143811457 143811670 -38603572 - AluSg/x SINE Alu -13 299 87 201 129 0 0 chr6 143811797 143811828 -38603414 + (CCCTAA)n Simple_repeat Simple_repeat 1 31 0 232 303 26 79 chr6 143811832 143811984 -38603258 - MIR SINE MIR -118 144 1 456 318 0 0 chr6 143812066 143812195 -38603047 + MIR3 SINE MIR 78 206 -2 24 32 0 0 chr6 143812313 143812344 -38602898 + AT_rich Low_complexity Low_complexity 1 31 0 2827 13 0 0 chr6 143812348 143812678 -38602564 - AluYa5 SINE Alu 0 330 1 2325 91 3 0 chr6 143812680 143812977 -38602265 - AluSp SINE Alu -15 298 1 2070 110 0 86 chr6 143813144 143813480 -38601762 + AluSx SINE Alu 1 307 -5 2163 109 16 16 chr6 143813720 143814031 -38601211 + AluSx SINE Alu 1 311 -1 441 293 26 0 chr6 143814035 143814151 -38601091 + L2 LINE L2 3193 3311 -2 245 310 90 0 chr6 143814270 143814370 -38600872 + MIR3 SINE MIR 97 205 -3 304 210 16 0 chr6 143814456 143814518 -38600724 - Charlie8 DNA MER1_type -999 1418 1356 25 51 0 0 chr6 143816350 143816389 -38598853 + AT_rich Low_complexity Low_complexity 1 39 0 2315 97 3 0 chr6 143816424 143816722 -38598520 - AluSx SINE Alu -13 299 1 1096 62 0 0 chr6 143816722 143816852 -38598390 - AluSq/x SINE Alu -177 136 7 2081 104 50 3 chr6 143817041 143817340 -38597902 + AluSq SINE Alu 1 313 0 2032 96 40 0 chr6 143817864 143818136 -38597106 - AluSx SINE Alu -16 296 14 780 131 49 8 chr6 143818247 143818369 -38596873 + AluJo SINE Alu 9 135 -177 467 245 82 22 chr6 143818379 143818563 -38596679 + L1MC5 LINE L1 7733 7927 -34 292 128 0 0 chr6 143818800 143818881 -38596361 - AluSp/q SINE Alu 0 326 246 2094 124 3 0 chr6 143818908 143819218 -38596024 - AluSq SINE Alu 0 311 1 595 347 25 21 chr6 143819908 143820107 -38595135 + L3 LINE CR1 1129 1331 -246 2524 54 0 13 chr6 143820107 143820420 -38594822 + AluY SINE Alu 3 311 0 595 347 25 21 chr6 143820420 143820505 -38594737 + L3 LINE CR1 1331 1414 -163 851 77 0 8 chr6 143820557 143820674 -38594568 - AluSc SINE Alu -3 306 191 189 327 0 0 chr6 143820692 143820744 -38594498 + MER5C DNA MER1_type 1 52 -272 3131 124 15 52 chr6 143821275 143821320 -38593922 - L1MB1 LINE L1 -3 6165 6120 2338 82 10 0 chr6 143821320 143821614 -38593628 - AluSx SINE Alu -15 297 1 2234 89 41 0 chr6 143821623 143821914 -38593328 - AluSg SINE Alu -7 303 1 3131 124 15 52 chr6 143821914 143822382 -38592860 - L1MB1 LINE L1 -56 6112 5661 2214 120 0 0 chr6 143822481 143822780 -38592462 + AluSx SINE Alu 1 299 -13 2202 96 0 0 chr6 143822997 143823306 -38591936 - AluSx SINE Alu 0 309 1 3134 127 8 108 chr6 143823412 143824067 -38591175 + L1PB2 LINE L1 5556 6144 -7 2299 105 7 0 chr6 143824246 143824541 -38590701 + AluSx SINE Alu 1 297 -15 207 195 0 0 chr6 143824689 143824730 -38590512 + MER91 DNA MER1_type 1 41 -155 557 200 0 0 chr6 143824798 143824893 -38590349 + MER81 DNA DNA 1 95 -19 2520 70 0 3 chr6 143825202 143825514 -38589728 - AluY SINE Alu 0 311 1 2312 123 0 0 chr6 143825563 143825873 -38589369 - AluSx SINE Alu -2 310 1 478 211 0 0 chr6 143825943 143826038 -38589204 + U13 snRNA snRNA 1 95 -9 189 0 0 0 chr6 143826064 143826085 -38589157 + (TA)n Simple_repeat Simple_repeat 1 21 0 608 86 11 32 chr6 143827316 143827409 -38587833 + MER41B LTR ERV1 456 546 -89 549 125 18 18 chr6 143827409 143827521 -38587721 + GA-rich Low_complexity Low_complexity 1 112 0 2260 117 0 0 chr6 143827571 143827870 -38587372 + AluSq SINE Alu 1 299 -14 497 107 12 36 chr6 143827932 143828016 -38587226 - AluJ/FRAM SINE Alu -7 305 224 414 0 0 0 chr6 143828157 143828203 -38587039 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1771 255 72 47 chr6 143828203 143828339 -38586903 - L1MEc LINE L1 -3559 2656 2525 2282 105 0 16 chr6 143828339 143828643 -38586599 - AluSp SINE Alu -14 299 1 1771 255 72 47 chr6 143828643 143829159 -38586083 - L1MEc LINE L1 -3690 2525 2023 2177 128 3 0 chr6 143829159 143829463 -38585779 - AluSx SINE Alu -7 305 1 1771 255 72 47 chr6 143829463 143829745 -38585497 - L1MEc LINE L1 -4192 2023 1750 2195 113 9 28 chr6 143829745 143830063 -38585179 - AluSx SINE Alu 0 312 1 1771 255 72 47 chr6 143830063 143830391 -38584851 - L1MEc LINE L1 -4465 1750 1402 2374 104 0 0 chr6 143830763 143831062 -38584180 + AluSx SINE Alu 1 299 -13 2463 83 0 6 chr6 143831065 143831378 -38583864 + AluY SINE Alu 1 311 0 2055 128 10 3 chr6 143831505 143831802 -38583440 - AluJb SINE Alu -13 299 1 1363 119 0 68 chr6 143832779 143832844 -38582398 - L1PA14 LINE L1 0 6161 6093 2303 112 0 0 chr6 143832844 143833149 -38582093 - AluSx SINE Alu -7 305 1 1363 119 0 68 chr6 143833149 143833334 -38581908 - L1PA14 LINE L1 -68 6093 5928 909 171 0 0 chr6 143833375 143833521 -38581721 + FRAM SINE Alu 1 145 -31 207 114 0 0 chr6 143833524 143833559 -38581683 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 477 145 0 0 chr6 143833596 143833665 -38581577 + FRAM/FAM SINE Alu 9 77 -99 294 125 0 0 chr6 143833679 143833727 -38581515 + (A)n Simple_repeat Simple_repeat 1 48 0 2107 108 11 14 chr6 143834496 143834873 -38580369 - AluSx SINE Alu 0 376 1 2035 154 0 0 chr6 143835181 143835466 -38579776 - AluJb SINE Alu -27 285 1 217 315 27 14 chr6 143835840 143835913 -38579329 + MIR SINE MIR 25 98 -164 194 0 39 0 chr6 143835913 143835939 -38579303 + (TTA)n Simple_repeat Simple_repeat 2 28 0 683 128 0 106 chr6 143835965 143836051 -38579191 - FLAM_A SINE Alu -173 138 71 848 118 0 52 chr6 143836051 143836186 -38579056 + FLAM_C SINE Alu 1 128 -5 683 128 0 106 chr6 143836186 143836240 -38579002 - FLAM_A SINE Alu -240 71 13 348 285 48 12 chr6 143836244 143836409 -38578833 + MIR SINE MIR 92 262 0 979 202 105 43 chr6 143837574 143837594 -38577648 - MER57A LTR ERV1 0 403 386 2401 84 0 13 chr6 143837594 143837902 -38577340 + AluSx SINE Alu 1 304 -8 979 202 105 43 chr6 143837902 143838183 -38577059 - MER57A LTR ERV1 -17 386 115 1814 165 14 35 chr6 143838214 143838560 -38576682 + MER6A DNA MER2_type 41 379 -226 189 0 0 0 chr6 143838560 143838581 -38576661 + (TCCCC)n Simple_repeat Simple_repeat 5 25 0 208 222 0 0 chr6 143838683 143838719 -38576523 + polypyrimidine Low_complexity Low_complexity 3 38 0 280 157 78 0 chr6 143838722 143838773 -38576469 - MER66B LTR ERV1 -141 345 291 297 136 51 68 chr6 143838977 143839036 -38576206 + FRAM/FAM SINE Alu 21 78 -97 * 1073 170 0 0 chr6 143839033 143839233 -38576009 + MER6A DNA MER2_type 403 602 -3 1691 102 47 0 chr6 143839624 143839860 -38575382 + AluSx SINE Alu 5 251 -61 2380 83 3 16 chr6 143840214 143840350 -38574892 + AluSx SINE Alu 1 137 -175 2311 78 14 0 chr6 143840350 143840643 -38574599 + AluSc SINE Alu 1 297 -12 2380 83 3 16 chr6 143840643 143840819 -38574423 + AluSx SINE Alu 137 309 -3 191 254 0 34 chr6 143840828 143840887 -38574355 + MIR SINE MIR 205 261 -1 2199 126 0 0 chr6 143841898 143842191 -38573051 + AluSx SINE Alu 6 298 -14 2455 92 0 6 chr6 143842329 143842643 -38572599 + AluSx SINE Alu 1 312 0 330 87 0 0 chr6 143843229 143843275 -38571967 + (CA)n Simple_repeat Simple_repeat 2 47 0 1797 138 3 44 chr6 143843441 143843739 -38571503 + AluJb SINE Alu 7 292 -20 13024 130 18 35 chr6 143843979 143845365 -38569877 + ERVL-D LTR ERVL 3724 5066 -698 2158 119 3 0 chr6 143845365 143845667 -38569575 + AluSx SINE Alu 2 304 -8 13024 130 18 35 chr6 143845667 143846355 -38568887 + ERVL-D LTR ERVL 5066 5764 0 2051 225 48 44 chr6 143846199 143846348 -38568894 + Ricksha DNA DNA 185 335 -1711 1919 182 143 45 chr6 143846348 143846810 -38568432 + MLT2D LTR ERVL 1 507 -46 247 171 0 0 chr6 143846810 143846851 -38568391 + CT-rich Low_complexity Low_complexity 3 43 0 306 0 0 0 chr6 143846890 143846924 -38568318 + (CA)n Simple_repeat Simple_repeat 2 35 0 558 319 91 41 chr6 143847414 143847495 -38567747 - L2 LINE L2 -18 3295 3219 1688 187 0 3 chr6 143847495 143847789 -38567453 + AluJb SINE Alu 1 293 -19 558 319 91 41 chr6 143847789 143847950 -38567292 - L2 LINE L2 -94 3219 3067 2284 89 0 29 chr6 143847950 143848263 -38566979 - AluSc SINE Alu -5 304 1 558 319 91 41 chr6 143848263 143848483 -38566759 - L2 LINE L2 -246 3067 2809 1428 157 15 0 chr6 143849045 143849312 -38565930 + L1MA4 LINE L1 6027 6297 -3 733 149 0 0 chr6 143849959 143850073 -38565169 - AluSx SINE Alu -5 305 192 1072 114 7 0 chr6 143850074 143850214 -38565028 - AluSx SINE Alu -171 141 1 230 293 111 0 chr6 143850222 143850321 -38564921 - MIR SINE MIR -75 187 78 2096 133 0 0 chr6 143850322 143850601 -38564641 + AluSx SINE Alu 1 279 -33 185 0 40 0 chr6 143850603 143850628 -38564614 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 2215 130 0 9 chr6 143850835 143851150 -38564092 + AluSx SINE Alu 1 312 0 1990 145 7 3 chr6 143851592 143851889 -38563353 - AluJo SINE Alu -14 298 1 1933 181 0 0 chr6 143852231 143852535 -38562707 + AluJb SINE Alu 6 309 -3 21 36 0 0 chr6 143853326 143853354 -38561888 + AT_rich Low_complexity Low_complexity 1 28 0 2633 49 0 0 chr6 143855240 143855546 -38559696 - AluSc SINE Alu -3 306 1 223 253 0 53 chr6 143856531 143856606 -38558636 + C-rich Low_complexity Low_complexity 5 75 0 21 0 0 0 chr6 143856792 143856813 -38558429 + GC_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr6 143861105 143861132 -38554110 + (CA)n Simple_repeat Simple_repeat 1 27 0 268 297 162 0 chr6 143863582 143863693 -38551549 - L2 LINE L2 -4 3309 3181 1941 133 4 0 chr6 143863773 143864051 -38551191 - AluSx SINE Alu -4 308 30 2654 40 0 3 chr6 143864803 143865106 -38550136 + AluY SINE Alu 1 302 -9 323 292 186 58 chr6 143866032 143866088 -38549154 - MIR SINE MIR -2 260 213 897 205 242 8 chr6 143866088 143866332 -38548910 - AluJb SINE Alu 0 302 2 323 292 186 58 chr6 143866332 143866501 -38548741 - MIR SINE MIR -49 213 6 213 94 0 0 chr6 143866619 143866651 -38548591 + (GGGAGA)n Simple_repeat Simple_repeat 4 35 0 1574 254 129 32 chr6 143866666 143867287 -38547955 + L1ME3A LINE L1 5482 6162 -8 997 104 0 0 chr6 143867620 143867745 -38547497 - AluSq/x SINE Alu -188 125 1 402 95 0 0 chr6 143868309 143868413 -38546829 + AluSp/q SINE Alu 240 343 0 353 73 0 0 chr6 143868520 143868575 -38546667 + L1PA16 LINE L1 6112 6166 0 248 219 0 0 chr6 143868786 143868827 -38546415 - MER66B LTR ERV1 -142 344 304 1626 181 33 10 chr6 143868981 143869280 -38545962 - AluJb SINE Alu -6 306 1 2036 124 28 0 chr6 143869680 143869970 -38545272 - AluSx SINE Alu -14 298 1 210 148 16 66 chr6 143870334 143870395 -38544847 + A-rich Low_complexity Low_complexity 1 58 0 21 36 0 0 chr6 143870443 143870471 -38544771 + AT_rich Low_complexity Low_complexity 1 28 0 200 73 18 55 chr6 143870894 143870949 -38544293 + (CAA)n Simple_repeat Simple_repeat 2 54 0 2398 40 0 119 chr6 143872372 143872724 -38542518 - AluY SINE Alu -1 310 1 496 202 10 20 chr6 143872813 143872912 -38542330 + MER2 DNA MER2_type 1 98 -247 1223 44 0 0 chr6 143872912 143873048 -38542194 + AluSg SINE Alu 1 136 -174 738 62 0 0 chr6 143873148 143873244 -38541998 + (TTCC)n Simple_repeat Simple_repeat 4 99 0 1291 133 39 142 chr6 143873257 143873588 -38541654 - AluYb8 SINE Alu -21 297 1 427 182 0 0 chr6 143873594 143873660 -38541582 + MER2 DNA MER2_type 280 345 0 1485 136 18 4 chr6 143873700 143873928 -38541314 + AluJb SINE Alu 1 231 -81 219 69 0 0 chr6 143873934 143873963 -38541279 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2491 71 0 0 chr6 143874269 143874563 -38540679 - AluSg SINE Alu -15 295 2 237 146 0 109 chr6 143874751 143874806 -38540436 + MIR SINE MIR 143 191 -71 398 354 39 8 chr6 143875328 143875458 -38539784 - L2 LINE L2 -2 3270 3137 1820 184 0 7 chr6 143875617 143875921 -38539321 - AluJb SINE Alu -10 302 1 189 0 0 0 chr6 143876380 143876401 -38538841 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1915 152 10 3 chr6 143876560 143876869 -38538373 - AluJb SINE Alu -1 311 1 236 318 18 64 chr6 143876869 143876979 -38538263 - MIR3 SINE MIR -95 113 9 2763 23 0 0 chr6 143877206 143877513 -38537729 + AluYb8 SINE Alu 1 307 -11 250 298 85 11 chr6 143877608 143877702 -38537540 - MIR SINE MIR -134 128 28 2422 88 0 3 chr6 143877935 143878240 -38537002 - AluSx SINE Alu -8 304 1 491 249 229 31 chr6 143878986 143879114 -38536128 + L2 LINE L2 2896 2997 -316 2974 79 3 0 chr6 143879114 143879468 -38535774 - THE1A LTR MaLR 0 355 1 12688 94 2 2 chr6 143879468 143881049 -38534193 - THE1A-int LTR MaLR 0 1580 1 2724 89 23 0 chr6 143881049 143881396 -38533846 - THE1A LTR MaLR 0 355 1 491 249 229 31 chr6 143881396 143881614 -38533628 + L2 LINE L2 2996 3313 0 2137 132 0 0 chr6 143881646 143881949 -38533293 - AluSx SINE Alu -9 303 1 191 36 36 0 chr6 143882033 143882061 -38533181 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2089 131 0 0 chr6 143882103 143882411 -38532831 + AluSx SINE Alu 1 308 0 776 278 140 86 chr6 143882439 143883230 -38532012 + L3 LINE CR1 739 1572 -5 1664 166 26 13 chr6 143883328 143883635 -38531607 - AluJb SINE Alu -1 311 1 341 259 7 102 chr6 143884110 143884257 -38530985 + L3b LINE CR1 1367 1499 -84 780 234 98 84 chr6 143884874 143885072 -38530170 - MLT1A2 LTR MaLR 0 374 167 2313 99 3 37 chr6 143885072 143885394 -38529848 - AluSx SINE Alu -1 311 1 780 234 98 84 chr6 143885394 143885562 -38529680 - MLT1A2 LTR MaLR -207 167 3 320 301 111 13 chr6 143885604 143885757 -38529485 - L1ME LINE L1 -350 5771 5604 605 247 147 39 chr6 143885778 143886009 -38529233 - MIR SINE MIR 0 262 7 2071 214 43 89 chr6 143886503 143886753 -38528489 - L1MC4 LINE L1 -6 8036 7776 2463 75 0 0 chr6 143886753 143887047 -38528195 - AluSc SINE Alu -15 294 1 2071 214 43 89 chr6 143887047 143887274 -38527968 - L1MC4 LINE L1 -266 7776 7540 2243 95 40 0 chr6 143887274 143887570 -38527672 - AluSg SINE Alu -2 308 1 2071 214 43 89 chr6 143887570 143887841 -38527401 - L1MC4 LINE L1 -502 7540 7238 1116 216 125 90 chr6 143887861 143887935 -38527307 - L1MC4 LINE L1 -970 7072 7002 2144 96 41 3 chr6 143887935 143888228 -38527014 - AluSg SINE Alu -6 304 1 1116 216 125 90 chr6 143888228 143888575 -38526667 - L1MC4 LINE L1 -1040 7002 6621 2115 108 0 7 chr6 143888575 143888861 -38526381 - AluSg SINE Alu -26 284 1 1116 216 125 90 chr6 143888861 143889040 -38526202 - L1MC4 LINE L1 -1421 6621 6450 1511 136 120 12 chr6 143889441 143889699 -38525543 - AluSg SINE Alu -24 286 1 817 215 5 11 chr6 143889801 143889987 -38525255 - AluSq SINE Alu -19 294 110 1083 68 8 0 chr6 143890222 143890354 -38524888 - AluSq SINE Alu -179 133 1 2539 56 0 0 chr6 143890638 143890941 -38524301 + AluY SINE Alu 1 303 -8 724 165 74 0 chr6 143891078 143891199 -38524043 + FLAM_C SINE Alu 1 130 -3 1790 168 3 0 chr6 143891221 143891507 -38523735 + AluJb SINE Alu 13 299 -13 528 286 69 30 chr6 143891855 143892058 -38523184 - MIR SINE MIR 0 262 52 2195 119 0 0 chr6 143892225 143892527 -38522715 - AluSx SINE Alu -10 302 1 319 326 10 10 chr6 143892947 143893045 -38522197 - MIR3 SINE MIR -1 207 110 217 246 70 0 chr6 143894212 143894269 -38520973 + MIR3 SINE MIR 141 201 -7 24 32 0 0 chr6 143894823 143894854 -38520388 + AT_rich Low_complexity Low_complexity 1 31 0 2167 91 7 7 chr6 143894855 143895142 -38520100 - AluSx SINE Alu -25 287 1 249 132 0 0 chr6 143895213 143895251 -38519991 + MIR SINE MIR 108 145 -63 2438 147 43 89 chr6 143895345 143895377 -38519865 - LTR54 LTR ERV1 0 510 478 1966 128 13 20 chr6 143895377 143895675 -38519567 - AluSx SINE Alu -16 296 1 2438 147 43 89 chr6 143895675 143896172 -38519070 - LTR54 LTR ERV1 -32 478 5 283 284 53 21 chr6 143896497 143896592 -38518650 - L2 LINE L2 0 3313 3216 250 338 108 31 chr6 143896587 143896809 -38518433 - L2 LINE L2 -348 2966 2728 * 367 148 16 0 chr6 143897030 143897091 -38518151 - MER51A LTR ERV1 -90 544 483 285 29 0 0 chr6 143897094 143897128 -38518114 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1485 151 0 44 chr6 143897130 143897279 -38517963 - AluJo SINE Alu -30 282 147 2304 104 3 7 chr6 143897279 143897587 -38517655 - AluSq SINE Alu -6 307 1 1485 151 0 44 chr6 143897587 143897688 -38517554 - AluJo SINE Alu -165 147 43 1548 187 19 16 chr6 143897726 143898041 -38517201 + MER33 DNA MER1_type 8 323 -1 203 246 21 7 chr6 143899057 143899112 -38516130 + L2 LINE L2 2867 2920 -352 947 160 11 37 chr6 143899491 143899679 -38515563 + LTR64 LTR ERVK 1 183 -375 30 0 0 0 chr6 143899841 143899871 -38515371 + AT_rich Low_complexity Low_complexity 1 30 0 1070 199 10 82 chr6 143900082 143900183 -38515059 + LTR64 LTR ERVK 1 108 -450 1666 165 79 0 chr6 143900183 143900462 -38514780 + AluSx SINE Alu 1 301 -11 1070 199 10 82 chr6 143900462 143900651 -38514591 + LTR64 LTR ERVK 108 270 -288 2161 52 62 14 chr6 143900688 143900976 -38514266 + AluY SINE Alu 1 302 -9 1141 150 9 33 chr6 143900983 143901217 -38514025 - AluJb SINE Alu -21 291 1 853 228 123 26 chr6 143901217 143901484 -38513758 + LTR64 LTR ERVK 266 558 0 4539 91 10 55 chr6 143901708 143901958 -38513284 + L1PB2 LINE L1 5281 5541 -610 2200 88 0 59 chr6 143901958 143902278 -38512964 - AluSx SINE Alu -11 301 1 4539 91 10 55 chr6 143902278 143902671 -38512571 + L1PB2 LINE L1 5541 5890 -261 2034 156 7 0 chr6 143902671 143902979 -38512263 + AluSx SINE Alu 1 310 -2 4539 91 10 55 chr6 143902979 143903060 -38512182 + L1PB2 LINE L1 5890 5973 -178 2054 132 3 10 chr6 143903060 143903370 -38511872 + AluSx SINE Alu 1 308 -4 1916 125 6 83 chr6 143903552 143903889 -38511353 - AluJb SINE Alu -1 311 1 2193 128 0 0 chr6 143903950 143904246 -38510996 - AluSx SINE Alu -16 296 1 813 81 0 0 chr6 143904263 143904362 -38510880 - HY3 scRNA scRNA -1 100 2 236 328 0 0 chr6 143904453 143904520 -38510722 - L3 LINE CR1 -295 1282 1216 1229 161 82 50 chr6 143904539 143904781 -38510461 - MLT2C1 LTR ERVL 0 397 143 2284 94 3 3 chr6 143904781 143905080 -38510162 - AluSx SINE Alu -9 303 5 1229 161 82 50 chr6 143905080 143905116 -38510126 - MLT2C1 LTR ERVL -254 143 110 182 265 73 15 chr6 143905136 143905204 -38510038 - L3 LINE CR1 -410 1167 1096 354 128 0 0 chr6 143905214 143905290 -38509952 + Alu SINE Alu 237 312 0 315 340 88 0 chr6 143905309 143905503 -38509739 - L3 LINE CR1 -502 1075 865 1583 184 44 3 chr6 143905649 143905942 -38509300 + AluJo SINE Alu 1 305 -7 270 347 41 0 chr6 143906106 143906204 -38509038 - MIR SINE MIR -123 139 38 2139 116 7 7 chr6 143906368 143906670 -38508572 - AluSx SINE Alu -10 302 1 181 283 17 33 chr6 143906721 143906781 -38508461 - L2 LINE L2 -4 3268 3210 931 142 0 15 chr6 143906877 143907011 -38508231 + FLAM_C SINE Alu 1 132 -1 1757 169 0 35 chr6 143907236 143907550 -38507692 - AluJo SINE Alu -9 303 1 1981 145 3 0 chr6 143907993 143908306 -38506936 - AluSx SINE Alu 0 314 1 689 244 47 0 chr6 143908307 143908434 -38506808 - AluJo SINE Alu -89 223 91 301 319 148 15 chr6 143909370 143909505 -38505737 - MIR3 SINE MIR -19 189 37 1032 66 0 0 chr6 143960090 143960212 -38455030 - AluY SINE Alu -189 122 1 448 281 124 32 chr6 143960280 143960562 -38454680 - L1M4 LINE L1 -2828 3318 3063 2129 115 3 7 chr6 143960562 143960858 -38454384 - AluSg SINE Alu -15 295 1 448 281 124 32 chr6 143960858 143961138 -38454104 - L1M4 LINE L1 -3083 3063 2704 1926 145 0 33 chr6 143961138 143961442 -38453800 - AluSg SINE Alu -16 294 1 263 220 20 70 chr6 143961516 143961616 -38453626 - L1MEd LINE L1 -5964 155 61 2271 62 69 0 chr6 143963143 143963434 -38451808 - AluY SINE Alu 0 311 1 2158 106 10 3 chr6 143964751 143965053 -38450189 - AluSg SINE Alu -6 304 1 259 235 20 31 chr6 143965133 143965231 -38450011 + (TATATG)n Simple_repeat Simple_repeat 1 97 0 570 82 22 67 chr6 143965232 143965950 -38449292 + (TA)n Simple_repeat Simple_repeat 1 686 0 236 282 125 19 chr6 143966096 143966312 -38448930 - L1ME4a LINE L1 -178 5943 5705 188 298 124 50 chr6 143968160 143968281 -38446961 + L2 LINE L2 3125 3254 -18 355 139 13 63 chr6 143968554 143968633 -38446609 + MER5B DNA MER1_type 26 100 -78 2378 109 0 0 chr6 143968634 143969045 -38446197 + AluSx SINE Alu 1 411 0 246 247 12 62 chr6 143969045 143969126 -38446116 + MER5B DNA MER1_type 92 168 -10 1522 118 1 5 chr6 143969555 143969791 -38445451 - L1M1 LINE L1 -744 5402 5317 294 29 0 0 chr6 143969804 143969839 -38445403 + (TGG)n Simple_repeat Simple_repeat 3 37 0 931 152 85 0 chr6 143969839 143969994 -38445248 - AluSg/x SINE Alu -7 305 134 366 203 14 0 chr6 143970035 143970104 -38445138 - AluY SINE Alu -138 163 94 259 320 107 16 chr6 143970272 143970394 -38444848 - L2 LINE L2 -23 3249 3117 2199 128 0 0 chr6 143971217 143971529 -38443713 - AluSx SINE Alu 0 312 1 3279 81 37 29 chr6 143971700 143972216 -38443026 - L1MA3 LINE L1 0 7724 7205 215 211 0 35 chr6 143972235 143972292 -38442950 + (TA)n Simple_repeat Simple_repeat 1 55 0 14677 162 27 36 chr6 143972293 143973750 -38441492 - L1MA3 LINE L1 -512 7212 5742 2238 108 0 3 chr6 143973750 143974046 -38441196 - AluSg SINE Alu -15 295 1 14677 162 27 36 chr6 143974046 143975102 -38440140 - L1MA3 LINE L1 -1982 5742 4677 1710 104 0 0 chr6 143975102 143975322 -38439920 - AluSg/x SINE Alu -17 293 74 14677 162 27 36 chr6 143975322 143975402 -38439840 - L1MA3 LINE L1 -3047 4677 4598 2040 100 34 7 chr6 143975402 143975693 -38439549 + AluY SINE Alu 3 301 -10 14677 162 27 36 chr6 143975693 143976730 -38438512 - L1MA3 LINE L1 -3126 4598 3628 1144 84 0 19 chr6 143976732 143976886 -38438356 - AluY SINE Alu -4 307 157 2221 76 0 7 chr6 143976908 143977183 -38438059 + AluY SINE Alu 24 296 -15 18845 118 43 15 chr6 143977183 143978310 -38436932 - L1MA3 LINE L1 -4383 3182 2088 2350 116 3 0 chr6 143978310 143978620 -38436622 - AluSq SINE Alu -2 311 1 18845 118 43 15 chr6 143978620 143980571 -38434671 - L1MA3 LINE L1 -5477 2088 17 2160 127 3 0 chr6 143981754 143982046 -38433196 + AluSx SINE Alu 1 293 -19 226 366 70 57 chr6 143982699 143982926 -38432316 - L2 LINE L2 -62 3210 2981 1795 128 0 0 chr6 143983115 143983364 -38431878 - AluSg SINE Alu -6 304 56 363 281 61 41 chr6 143983447 143983643 -38431599 + L2 LINE L2 3099 3298 -15 228 200 0 0 chr6 143984530 143984580 -38430662 + (TA)n Simple_repeat Simple_repeat 1 50 0 213 154 0 0 chr6 143985094 143985133 -38430109 + CT-rich Low_complexity Low_complexity 3 41 0 23 33 0 0 chr6 143986333 143986363 -38428879 + AT_rich Low_complexity Low_complexity 1 30 0 347 295 35 75 chr6 143986944 143987171 -38428071 - L3 LINE CR1 -3 1574 1357 180 333 39 0 chr6 143987455 143987533 -38427709 - L3 LINE CR1 -334 1243 1163 586 156 0 0 chr6 143987533 143987623 -38427619 + AluSg SINE Alu 1 90 -220 218 321 57 0 chr6 143987649 143987702 -38427540 + MER91A DNA MER1_type 122 177 -19 213 224 20 0 chr6 143987878 143987927 -38427315 + L3 LINE CR1 1525 1574 -3 1710 89 0 0 chr6 143987987 143988200 -38427042 + AluSg SINE Alu 88 300 -10 216 297 0 15 chr6 143988440 143988540 -38426702 - MER91A DNA MER1_type -19 171 24 457 259 95 6 chr6 143988575 143988733 -38426509 - L3 LINE CR1 -707 870 699 195 146 0 0 chr6 143989180 143989221 -38426021 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 610 299 0 36 chr6 143990190 143990384 -38424858 - MIR SINE MIR -25 237 51 599 250 157 60 chr6 143990804 143991170 -38424072 - L1ME3 LINE L1 -305 5857 5435 2386 91 0 0 chr6 143991170 143991467 -38423775 + AluSg SINE Alu 1 297 -13 599 250 157 60 chr6 143991467 143991564 -38423678 - L1ME3 LINE L1 -727 5435 5349 3480 138 8 12 chr6 143992405 143992987 -38422255 - MER50 LTR ERV1 -30 704 125 468 56 127 0 chr6 143992987 143993058 -38422184 + MADE1 DNA Mariner 1 80 0 * 552 181 52 0 chr6 143993058 143993168 -38422074 - MER50 LTR ERV1 -608 126 11 332 347 26 49 chr6 143993813 143994078 -38421164 + L1ME LINE L1 5008 5266 -880 22 0 0 0 chr6 143994078 143994100 -38421142 + AT_rich Low_complexity Low_complexity 1 22 0 845 257 20 82 chr6 143994103 143994543 -38420699 + L1ME LINE L1 5292 5704 -466 563 121 11 0 chr6 143994563 143994654 -38420588 - THE1C LTR MaLR 0 375 284 2426 69 0 3 chr6 143994654 143994945 -38420297 + AluSx SINE Alu 13 302 -10 2349 100 0 3 chr6 143994952 143995263 -38419979 - AluSq SINE Alu -3 310 1 227 333 50 6 chr6 143995405 143995585 -38419657 - L1ME3 LINE L1 -1092 5054 4867 2083 91 14 11 chr6 143995685 143995960 -38419282 + AluSx SINE Alu 11 286 -26 306 0 0 0 chr6 143995964 143995998 -38419244 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2338 101 0 0 chr6 143996609 143996915 -38418327 - AluSx SINE Alu -4 308 3 304 339 32 16 chr6 143997056 143997180 -38418062 - L3 LINE CR1 -23 1554 1429 209 414 17 9 chr6 143998756 143998872 -38416370 + MIR SINE MIR 19 135 -73 558 330 36 10 chr6 143999389 143999583 -38415659 - MIR SINE MIR -48 214 16 274 161 54 0 chr6 143999629 143999685 -38415557 + MIR SINE MIR 109 167 -95 252 248 95 48 chr6 144001057 144001162 -38414080 + MIR SINE MIR 143 252 -10 876 267 45 9 chr6 144001971 144002192 -38413050 - MIR SINE MIR -21 241 13 304 207 207 89 chr6 144003284 144003419 -38411823 + MER5B DNA MER1_type 27 177 -1 2444 219 49 0 chr6 144003950 144004497 -38410745 + MER90 LTR ERV1 2 575 0 194 364 26 32 chr6 144005569 144005723 -38409519 + L2 LINE L2 2305 2457 -857 1549 133 0 0 chr6 144006140 144006388 -38408854 - L1MA2 LINE L1 0 6304 6057 301 288 11 1 chr6 144006446 144006545 -38408697 - MIR SINE MIR -41 167 68 2090 103 0 48 chr6 144006838 144007148 -38408094 + AluSq SINE Alu 1 295 -18 189 321 36 24 chr6 144007365 144007449 -38407793 - L2 LINE L2 -398 2916 2832 2381 83 0 0 chr6 144008330 144008630 -38406612 + AluY SINE Alu 1 300 -11 230 348 110 19 chr6 144009127 144009282 -38405960 - L2 LINE L2 -931 2383 2215 1038 79 0 0 chr6 144009329 144009456 -38405786 + AluSq/x SINE Alu 1 127 -185 478 99 0 0 chr6 144009457 144009528 -38405714 + AluSp/q SINE Alu 234 304 -9 568 235 130 12 chr6 144009578 144009740 -38405502 - MER5A DNA MER1_type 0 189 9 4196 134 18 16 chr6 144009917 144010677 -38404565 - Ricksha DNA DNA -13 3238 2477 6444 142 9 14 chr6 144010677 144011743 -38403499 - Ricksha DNA DNA -1247 1999 938 2426 122 61 16 chr6 144011743 144012169 -38403073 + MER65A LTR ERV1 1 445 0 6444 142 9 14 chr6 144012169 144012202 -38403040 - Ricksha DNA DNA -2308 938 906 1487 176 228 41 chr6 144012203 144012663 -38402579 - MLT2B3 LTR ERVL 0 554 9 1056 143 0 19 chr6 144012669 144012823 -38402419 + AluJb SINE Alu 148 298 -14 305 262 49 33 chr6 144013747 144013869 -38401373 - L1MC/D LINE L1 -2243 5542 5419 1645 191 17 11 chr6 144014521 144014878 -38400364 - MLT1A1 LTR MaLR 0 365 7 189 0 0 0 chr6 144015087 144015108 -38400134 + (A)n Simple_repeat Simple_repeat 1 21 0 2205 107 3 7 chr6 144015657 144015955 -38399287 - AluSg SINE Alu 0 310 14 226 333 0 25 chr6 144016275 144016356 -38398886 - MIR3 SINE MIR -116 92 14 817 86 17 0 chr6 144016560 144016676 -38398566 + L1PA7 LINE L1 6037 6154 0 2058 162 22 3 chr6 144016888 144017247 -38397995 + MER47A DNA MER2_type 1 366 0 2138 124 3 13 chr6 144019571 144019886 -38395356 + AluSx SINE Alu 1 312 0 332 250 52 0 chr6 144019890 144019986 -38395256 + MER103 DNA DNA 3 103 -63 295 153 56 0 chr6 144021125 144021197 -38394045 + (TATG)n Simple_repeat Simple_repeat 4 79 0 445 269 38 112 chr6 144021208 144021628 -38393614 - L1MC4a LINE L1 -1911 5897 5509 344 282 63 49 chr6 144021677 144021819 -38393423 - L1MC4a LINE L1 -1371 4775 4632 5512 74 11 27 chr6 144022471 144022848 -38392394 - L1PB1 LINE L1 -5 6146 5765 2278 122 3 0 chr6 144022848 144023159 -38392083 - AluSx SINE Alu 0 312 1 5512 74 11 27 chr6 144023159 144023609 -38391633 - L1PB1 LINE L1 -386 5765 5332 356 280 71 55 chr6 144024789 144024844 -38390398 - MIR SINE MIR -17 245 192 2952 57 3 0 chr6 144024844 144025214 -38390028 - L1PA7 LINE L1 -4 6150 5780 356 280 71 55 chr6 144025214 144025340 -38389902 - MIR SINE MIR -70 192 61 2189 104 3 26 chr6 144025576 144025884 -38389358 + AluSg SINE Alu 1 301 -9 2051 151 13 0 chr6 144026645 144026950 -38388292 - AluSx SINE Alu -3 309 1 334 362 85 7 chr6 144026950 144027091 -38388151 + L2 LINE L2 3121 3272 0 26 0 0 0 chr6 144027140 144027166 -38388076 + AT_rich Low_complexity Low_complexity 1 26 0 1982 152 0 7 chr6 144027201 144027497 -38387745 - AluSx SINE Alu -18 294 1 576 224 112 19 chr6 144027607 144027768 -38387474 + MIR SINE MIR 77 252 -10 204 280 30 50 chr6 144027840 144027940 -38387302 + MIR3 SINE MIR 93 190 -18 2162 99 7 3 chr6 144027951 144028271 -38386971 + AluSx SINE Alu 3 323 0 430 288 86 60 chr6 144028682 144028949 -38386293 - MLT1J LTR MaLR -8 503 230 2332 46 3 7 chr6 144029052 144029376 -38385866 + AluY SINE Alu 1 323 0 417 220 0 40 chr6 144031371 144031471 -38383771 + MLT1J1 LTR MaLR 65 160 -286 28 48 0 0 chr6 144031527 144031569 -38383673 + AT_rich Low_complexity Low_complexity 1 42 0 1759 185 0 0 chr6 144031579 144031877 -38383365 + AluJo SINE Alu 1 298 -14 419 248 73 9 chr6 144032314 144032423 -38382819 - L2 LINE L2 -5 3308 3193 2410 83 3 7 chr6 144032673 144032975 -38382267 - AluSg SINE Alu -9 301 1 2715 150 34 0 chr6 144033103 144033517 -38381725 + MSTA LTR MaLR 1 428 0 2025 129 20 0 chr6 144033597 144033899 -38381343 + AluSx SINE Alu 3 310 -2 307 306 30 52 chr6 144035188 144035322 -38379920 - MIR SINE MIR -112 150 20 1714 175 7 0 chr6 144035656 144035941 -38379301 + AluJo SINE Alu 5 291 -21 2139 123 0 7 chr6 144036805 144037105 -38378137 + AluSx SINE Alu 1 298 -14 368 248 263 8 chr6 144037112 144037245 -38377997 + MER5A DNA MER1_type 23 189 0 198 0 0 0 chr6 144037502 144037524 -38377718 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2031 125 0 3 chr6 144037767 144038062 -38377180 + AluSx SINE Alu 5 298 -14 2259 171 20 0 chr6 144038365 144038757 -38376485 - MER57A LTR ERV1 -3 400 1 2165 122 0 0 chr6 144038966 144039262 -38375980 + AluSx SINE Alu 1 296 -16 2215 100 10 13 chr6 144039626 144039936 -38375306 - AluSq SINE Alu -4 309 1 237 356 51 40 chr6 144040647 144040824 -38374418 - MIR SINE MIR -49 213 35 272 250 162 8 chr6 144041132 144041256 -38373986 - MIR SINE MIR -66 196 47 5022 76 58 9 chr6 144041258 144041928 -38373314 - L1PA11 LINE L1 -2 6172 5470 219 114 0 0 chr6 144044003 144044038 -38371204 + (TG)n Simple_repeat Simple_repeat 1 35 0 199 296 161 0 chr6 144044208 144044289 -38370953 - MIR SINE MIR -1 261 168 242 256 90 13 chr6 144045940 144046018 -38369224 - L2 LINE L2 -4 3309 3226 21 36 0 0 chr6 144046536 144046564 -38368678 + AT_rich Low_complexity Low_complexity 1 28 0 1915 139 52 85 chr6 144046617 144047005 -38368237 + THE1C LTR MaLR 1 375 0 657 310 47 41 chr6 144047339 144047704 -38367538 - ERVL LTR ERVL -519 5245 4879 573 310 61 11 chr6 144047819 144048080 -38367162 - ERVL LTR ERVL -1028 4736 4463 2371 100 0 3 chr6 144048149 144048460 -38366782 + AluSx SINE Alu 1 310 -2 1282 318 72 12 chr6 144048818 144049469 -38365773 - ERVL LTR ERVL -2901 2863 2174 1787 161 111 57 chr6 144050460 144050808 -38364434 + MSTB LTR MaLR 1 329 -97 1830 159 0 3 chr6 144050808 144051091 -38364151 - AluJb SINE Alu 0 312 31 1787 161 111 57 chr6 144051091 144051103 -38364139 + MSTB LTR MaLR 329 339 -87 2305 83 0 0 chr6 144051103 144051392 -38363850 - AluSx SINE Alu -19 293 5 1787 161 111 57 chr6 144051392 144051434 -38363808 + MSTB LTR MaLR 339 426 0 379 329 40 53 chr6 144052736 144053004 -38362238 + L2 LINE L2 2776 3049 -223 241 247 93 0 chr6 144053011 144053108 -38362134 + L1ME LINE L1 4578 4683 -1463 698 269 33 17 chr6 144053171 144053355 -38361887 + L1ME LINE L1 5107 5308 -854 2347 97 0 10 chr6 144053355 144053665 -38361577 + AluY SINE Alu 1 307 -4 698 269 33 17 chr6 144053665 144053801 -38361441 + L1ME LINE L1 5308 5440 -722 9952 130 31 13 chr6 144053809 144055499 -38359743 + L1P3 LINE L1 1 2779 -3682 698 246 34 52 chr6 144055481 144055597 -38359645 + L1ME LINE L1 5423 5540 -630 * 2367 82 7 13 chr6 144055597 144055902 -38359340 + AluY SINE Alu 1 303 -8 698 246 34 52 chr6 144055902 144056053 -38359189 + L1ME LINE L1 5540 5685 -485 1655 183 50 0 chr6 144056649 144056928 -38358314 - AluJb SINE Alu -19 293 1 1622 238 29 47 chr6 144056976 144057400 -38357842 + MLT1H LTR MaLR 72 487 -62 2273 99 3 0 chr6 144057400 144057694 -38357548 - AluSp SINE Alu -15 298 4 1622 238 29 47 chr6 144057694 144057756 -38357486 + MLT1H LTR MaLR 487 549 0 735 343 77 19 chr6 144057774 144058255 -38356987 + L2 LINE L2 2805 3313 0 324 252 47 28 chr6 144058920 144059027 -38356215 - L2 LINE L2 0 3313 3205 307 287 60 53 chr6 144059367 144059517 -38355725 - MLT1J LTR MaLR -360 151 1 2537 62 0 37 chr6 144060109 144060431 -38354811 + AluY SINE Alu 2 311 0 2079 128 7 3 chr6 144060544 144060842 -38354400 - AluSx SINE Alu -13 299 1 2401 70 9 35 chr6 144061234 144061549 -38353693 + AluY SINE Alu 1 307 -4 1682 186 14 17 chr6 144061795 144062090 -38353152 + AluJo SINE Alu 2 295 -17 2462 76 0 7 chr6 144062666 144062969 -38352273 + AluY SINE Alu 2 302 -9 2316 98 0 3 chr6 144063961 144064257 -38350985 - AluSc SINE Alu -14 295 1 803 187 0 8 chr6 144064356 144064490 -38350752 - FLAM_C SINE Alu 0 133 1 2376 79 0 0 chr6 144064501 144064792 -38350450 - AluY SINE Alu -20 291 1 763 231 12 29 chr6 144065820 144065993 -38349249 + MER5B DNA MER1_type 7 176 -2 705 238 50 33 chr6 144065998 144066179 -38349063 + MER5A DNA MER1_type 1 184 -5 1720 157 18 7 chr6 144066411 144066697 -38348545 + AluJb SINE Alu 1 289 -23 194 62 31 0 chr6 144066700 144066732 -38348510 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 25517 173 32 18 chr6 144066900 144072385 -38342857 + L1PB4 LINE L1 10 5682 -779 2178 117 0 0 chr6 144072385 144072668 -38342574 + AluSc SINE Alu 1 283 -26 198 0 0 0 chr6 144072668 144072690 -38342552 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 879 205 32 11 chr6 144072792 144072977 -38342265 - MER45C DNA AcHobo -3 950 762 2355 102 3 0 chr6 144073120 144073423 -38341819 + AluSc SINE Alu 1 304 -5 1231 173 4 54 chr6 144073821 144074004 -38341238 + L1PB4 LINE L1 6209 6375 -96 2255 93 28 0 chr6 144074004 144074295 -38340947 - AluSg SINE Alu -11 299 1 1231 173 4 54 chr6 144074295 144074388 -38340854 + L1PB4 LINE L1 6375 6471 0 1755 147 21 18 chr6 144074906 144075219 -38340023 + AluJb SINE Alu 3 316 0 2092 127 3 0 chr6 144076321 144076612 -38338630 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr6 144076720 144076741 -38338501 + AT_rich Low_complexity Low_complexity 1 21 0 232 304 130 0 chr6 144077327 144077419 -38337823 + L2 LINE L2 3169 3272 0 2345 108 0 0 chr6 144079801 144080106 -38335136 - AluSq SINE Alu -8 305 1 221 313 90 77 chr6 144080434 144080667 -38334575 - L2 LINE L2 -71 3201 2966 229 348 30 18 chr6 144080682 144080851 -38334391 - MIR SINE MIR -67 141 8 1328 105 73 0 chr6 144081211 144081402 -38333840 - AluY SINE Alu -1 310 106 503 95 14 14 chr6 144081402 144081476 -38333766 + AluY SINE Alu 16 89 -221 1969 143 0 10 chr6 144081953 144082253 -38332989 + AluJb SINE Alu 1 297 -15 2075 111 4 0 chr6 144082255 144082526 -38332716 + AluSx SINE Alu 1 272 -40 183 80 0 0 chr6 144082526 144082551 -38332691 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 487 310 30 20 chr6 144083477 144083670 -38331572 + MIR SINE MIR 7 204 -58 2250 113 0 0 chr6 144083670 144083963 -38331279 + AluSx SINE Alu 1 293 -19 2458 98 0 0 chr6 144085766 144086071 -38329171 - AluY SINE Alu -6 305 1 2306 90 0 32 chr6 144086645 144086956 -38328286 + AluY SINE Alu 1 301 -10 430 239 68 0 chr6 144087410 144087527 -38327715 - MIR SINE MIR -45 217 93 325 253 86 63 chr6 144087760 144087934 -38327308 + MER5B DNA MER1_type 1 178 0 2901 152 9 6 chr6 144088287 144088753 -38326489 + MLT1C LTR MaLR 1 467 0 1485 184 56 4 chr6 144089652 144089949 -38325293 + AluJo SINE Alu 1 311 0 2526 146 29 34 chr6 144090173 144090551 -38324691 + MSTB2 LTR MaLR 15 392 -65 2469 79 0 0 chr6 144090551 144090854 -38324388 - AluY SINE Alu -8 303 1 2526 146 29 34 chr6 144090854 144090920 -38324322 + MSTB2 LTR MaLR 392 457 0 342 333 46 7 chr6 144091452 144091605 -38323637 - L2 LINE L2 -12 3301 3143 762 258 101 16 chr6 144091671 144091919 -38323323 + MLT1J2 LTR MaLR 65 333 -117 4588 294 88 21 chr6 144092005 144092488 -38322754 - L2 LINE L2 -151 3162 2713 2377 81 0 19 chr6 144092488 144092797 -38322445 + AluSc SINE Alu 1 303 -6 4588 294 88 21 chr6 144092797 144094473 -38320769 - L2 LINE L2 -600 2713 860 284 278 10 31 chr6 144094601 144094698 -38320544 + L2 LINE L2 2995 3089 -183 561 300 56 75 chr6 144094895 144095551 -38319691 + L2 LINE L2 2643 3313 0 2208 116 0 10 chr6 144095906 144096209 -38319033 + AluSx SINE Alu 1 300 -12 2522 81 0 3 chr6 144096615 144096925 -38318317 + AluSg1 SINE Alu 1 309 0 180 0 0 0 chr6 144100144 144100164 -38315078 + (A)n Simple_repeat Simple_repeat 1 20 0 267 313 42 35 chr6 144100690 144100834 -38314408 - MIR3 SINE MIR -30 178 34 191 324 44 49 chr6 144101526 144101730 -38313512 - L2 LINE L2 -190 3082 2880 2363 101 0 0 chr6 144101795 144102091 -38313151 - AluSg SINE Alu -14 296 1 195 261 0 0 chr6 144102273 144102319 -38312923 - MIR SINE MIR -135 73 28 23 0 0 0 chr6 144102360 144102383 -38312859 + AT_rich Low_complexity Low_complexity 1 23 0 2255 177 37 33 chr6 144102704 144102852 -38312390 - LOR1b LTR ERV1 0 461 315 2289 117 3 0 chr6 144102852 144103150 -38312092 + AluSx SINE Alu 1 299 -13 2255 177 37 33 chr6 144103150 144103458 -38311784 - LOR1b LTR ERV1 -146 315 3 2104 96 0 28 chr6 144103458 144103773 -38311469 - AluY SINE Alu 0 307 1 2179 94 11 0 chr6 144103868 144104170 -38311072 - AluSc SINE Alu 0 305 1 1506 187 46 26 chr6 144104195 144104500 -38310742 + AluJo SINE Alu 1 311 -1 913 212 22 5 chr6 144105976 144106160 -38309082 + MER58A DNA MER1_type 30 216 -8 1848 173 35 35 chr6 144106163 144106538 -38308704 - THE1C LTR MaLR 0 375 1 239 152 0 0 chr6 144107885 144107931 -38307311 + (CCCCAG)n Simple_repeat Simple_repeat 3 48 0 2248 110 7 0 chr6 144109406 144109715 -38305527 + AluSx SINE Alu 1 311 -1 2255 130 0 0 chr6 144109751 144110052 -38305190 + AluSx SINE Alu 1 301 -11 343 306 16 0 chr6 144110250 144110371 -38304871 - MIR SINE MIR -21 241 119 322 325 106 45 chr6 144110587 144110740 -38304502 - L3 LINE CR1 -73 1504 1362 1365 168 96 11 chr6 144110740 144111020 -38304222 - AluJo SINE Alu -8 304 1 322 325 106 45 chr6 144111020 144111263 -38303979 - L3 LINE CR1 -215 1362 1084 2316 100 0 7 chr6 144111481 144111790 -38303452 - AluSq SINE Alu -6 307 1 232 163 0 61 chr6 144111862 144111911 -38303331 + polypurine Low_complexity Low_complexity 3 48 0 22 56 0 0 chr6 144114674 144114710 -38300532 + AT_rich Low_complexity Low_complexity 1 36 0 1822 126 56 14 chr6 144115277 144115562 -38299680 + AluSx SINE Alu 1 297 -15 204 364 119 0 chr6 144115667 144115818 -38299424 + L2 LINE L2 3104 3272 0 251 311 118 34 chr6 144115987 144116031 -38299211 - L2 LINE L2 0 3272 3233 3091 64 17 68 chr6 144116031 144116502 -38298740 - L1PA13 LINE L1 -1 6162 5716 251 311 118 34 chr6 144116502 144116576 -38298666 - L2 LINE L2 -39 3233 3144 2096 138 47 19 chr6 144116584 144116946 -38298296 - THE1C LTR MaLR 0 375 4 274 207 0 117 chr6 144117272 144117383 -38297859 + MIR SINE MIR 133 230 -32 2079 124 10 10 chr6 144117681 144117987 -38297255 - AluSx SINE Alu -6 306 1 267 376 75 11 chr6 144117987 144118253 -38296989 - L2 LINE L2 -759 2555 2273 1826 176 3 3 chr6 144119013 144119303 -38295939 - AluJb SINE Alu -22 290 1 434 157 0 36 chr6 144119356 144119439 -38295803 - FLAM_C SINE Alu 0 143 64 180 77 0 0 chr6 144119588 144119614 -38295628 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 352 269 0 71 chr6 144119618 144119759 -38295483 + L2 LINE L2 3182 3312 -1 585 251 114 9 chr6 144119779 144120006 -38295236 + L2 LINE L2 3023 3273 -40 2419 88 0 0 chr6 144120568 144120862 -38294380 + AluSq SINE Alu 1 294 -19 3438 130 41 21 chr6 144120909 144121693 -38293549 + MER21A LTR ERV1 16 925 -6 1766 121 70 51 chr6 144121761 144122092 -38293150 - MER1B DNA MER1_type 0 337 1 1546 124 120 11 chr6 144122757 144123032 -38292210 + AluSg SINE Alu 1 305 -5 1741 161 28 17 chr6 144123105 144123396 -38291846 - AluJb SINE Alu -18 294 1 252 293 43 58 chr6 144123938 144124126 -38291116 - L2 LINE L2 -17 3296 3112 214 242 17 8 chr6 144124174 144124261 -38290981 - L2 LINE L2 -263 3009 2924 314 226 86 11 chr6 144124261 144124354 -38290888 - MER91B DNA MER1_type 0 190 91 962 202 53 59 chr6 144124454 144124776 -38290466 + MER33 DNA MER1_type 1 320 -4 313 319 30 12 chr6 144125693 144125859 -38289383 - MIR SINE MIR 0 262 94 189 379 45 23 chr6 144126164 144126341 -38288901 + MIR3 SINE MIR 20 200 -8 23 33 0 0 chr6 144126510 144126540 -38288702 + AT_rich Low_complexity Low_complexity 1 30 0 239 331 63 16 chr6 144126540 144126667 -38288575 + MIR3 SINE MIR 14 146 -62 399 265 19 99 chr6 144126837 144126921 -38288321 - MIR SINE MIR -49 213 124 2282 104 3 16 chr6 144126921 144127230 -38288012 - AluSx SINE Alu -7 305 1 399 265 19 99 chr6 144127230 144127356 -38287886 - MIR SINE MIR -138 124 20 772 286 14 0 chr6 144128116 144128333 -38286909 + MIR SINE MIR 21 240 -22 1196 197 32 7 chr6 144128411 144128690 -38286552 - L1MB7 LINE L1 -8 6176 5891 1026 114 0 0 chr6 144129159 144129291 -38285951 - AluSq/x SINE Alu -180 132 1 2159 118 0 7 chr6 144130238 144130526 -38284716 + AluSx SINE Alu 1 286 -26 1117 96 14 0 chr6 144130603 144130749 -38284493 - AluSq SINE Alu -11 302 155 734 131 0 0 chr6 144130751 144130858 -38284384 - AluSq SINE Alu -205 108 2 3657 131 32 27 chr6 144131991 144132617 -38282625 - L1MA4 LINE L1 -7 6293 5665 847 206 106 5 chr6 144133261 144133377 -38281865 - MER20 DNA MER1_type 0 219 116 1512 141 113 54 chr6 144133377 144133731 -38281511 - THE1C LTR MaLR 0 375 1 847 206 106 5 chr6 144133731 144133813 -38281429 - MER20 DNA MER1_type -103 116 1 2137 104 10 3 chr6 144133862 144134151 -38281091 + AluSc SINE Alu 1 291 -18 2211 107 7 29 chr6 144134486 144134794 -38280448 + AluSg SINE Alu 5 305 -5 585 184 116 152 chr6 144136236 144136257 -38278985 + MLT2D LTR ERVL 1 21 -393 2775 80 16 11 chr6 144136257 144136630 -38278612 - THE1C LTR MaLR 0 375 1 585 184 116 152 chr6 144136630 144136725 -38278517 + MLT2D LTR ERVL 21 118 -296 2165 112 3 0 chr6 144136725 144137010 -38278232 + AluSx SINE Alu 1 286 -26 585 184 116 152 chr6 144137010 144137228 -38278014 + MLT2D LTR ERVL 118 324 -90 373 128 0 176 chr6 144137316 144137418 -38277824 - MER69 DNA AcHobo 0 2526 2443 1947 127 0 83 chr6 144138379 144138703 -38276539 + AluJb SINE Alu 1 297 -15 2424 82 0 0 chr6 144139030 144139334 -38275908 + AluY SINE Alu 1 304 -7 2275 108 0 0 chr6 144139380 144139676 -38275566 + AluSx SINE Alu 1 296 -16 2795 217 70 2 chr6 144139811 144140409 -38274833 + MER82 DNA MER2_type 14 652 -1 21 0 0 0 chr6 144140411 144140432 -38274810 + AT_rich Low_complexity Low_complexity 1 21 0 2098 120 3 0 chr6 144140720 144141044 -38274198 - AluSx SINE Alu 0 325 1 312 206 29 15 chr6 144141135 144141203 -38274039 + MER3 DNA MER1_type 41 109 -100 654 177 0 0 chr6 144141231 144141344 -38273898 + FRAM SINE Alu 49 161 -15 712 179 100 0 chr6 144141348 144141488 -38273754 - MER3 DNA MER1_type -55 154 1 1424 173 85 7 chr6 144142728 144142999 -38272243 + AluJb SINE Alu 1 292 -20 2422 69 0 23 chr6 144143155 144143460 -38271782 - AluY SINE Alu -12 299 2 21 0 0 0 chr6 144143649 144143670 -38271572 + AT_rich Low_complexity Low_complexity 1 21 0 2239 84 0 0 chr6 144143909 144144184 -38271058 + AluY SINE Alu 1 275 -36 312 120 0 0 chr6 144144184 144144234 -38271008 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 207 0 0 0 chr6 144144411 144144434 -38270808 + (TG)n Simple_repeat Simple_repeat 1 23 0 603 249 101 43 chr6 144144803 144145060 -38270182 - MER97b DNA MER1_type? -9 1044 773 * 1424 223 33 6 chr6 144145059 144145395 -38269847 - MER97c DNA MER1_type? -445 645 301 182 36 0 36 chr6 144145397 144145425 -38269817 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1155 127 0 0 chr6 144145425 144145583 -38269659 - AluSq SINE Alu -28 285 128 1369 221 27 0 chr6 144145584 144145882 -38269360 - MER97c DNA MER1_type? -783 307 2 2138 108 4 0 chr6 144146090 144146369 -38268873 + AluSx SINE Alu 3 282 -30 29 28 0 0 chr6 144146538 144146574 -38268668 + AT_rich Low_complexity Low_complexity 1 36 0 270 204 41 10 chr6 144146755 144146853 -38268389 + (TA)n Simple_repeat Simple_repeat 2 102 0 30 58 0 14 chr6 144146942 144146977 -38268265 + AT_rich Low_complexity Low_complexity 1 36 -32 1510 152 3 84 chr6 144146977 144147300 -38267942 + AluJo SINE Alu 1 297 -15 30 58 0 14 chr6 144147300 144147333 -38267909 + AT_rich Low_complexity Low_complexity 36 68 0 2070 114 9 25 chr6 144147675 144147811 -38267431 + AluSx SINE Alu 1 138 -174 2034 137 0 3 chr6 144147811 144148104 -38267138 + AluJb SINE Alu 1 292 -20 2070 114 9 25 chr6 144148104 144148283 -38266959 + AluSx SINE Alu 138 311 -1 776 233 35 30 chr6 144148731 144148933 -38266309 - MER63A DNA MER1_type -7 203 1 2524 114 17 28 chr6 144149216 144149535 -38265707 - LTR18A LTR ERVL 0 357 41 2980 9 0 0 chr6 144149535 144149852 -38265390 - AluYb8 SINE Alu -1 317 1 2524 114 17 28 chr6 144149852 144149893 -38265349 - LTR18A LTR ERVL -316 41 1 462 214 41 0 chr6 144149959 144150057 -38265185 - HERVL18 LTR ERVL 0 6047 5946 664 128 11 0 chr6 144150116 144150210 -38265032 - HERVL18 LTR ERVL -1559 4488 4394 4969 141 75 33 chr6 144150218 144150550 -38264692 - HERVL18 LTR ERVL -2474 3573 3257 2643 17 0 7 chr6 144150550 144150848 -38264394 + AluY SINE Alu 1 296 -15 2488 68 0 0 chr6 144150858 144151152 -38264090 + AluY SINE Alu 1 294 -17 4969 141 75 33 chr6 144151152 144151629 -38263613 - HERVL18 LTR ERVL -2798 3249 2718 1628 111 11 2 chr6 144151626 144151900 -38263342 - HERVL18 LTR ERVL -3595 2452 2119 * 1832 157 10 9 chr6 144151899 144152391 -38262851 - HERVL18 LTR ERVL -4237 1810 1255 1867 191 0 74 chr6 144152391 144152518 -38262724 - HERVL18 LTR ERVL -5589 458 323 2416 92 0 22 chr6 144152518 144152835 -38262407 - AluSg SINE Alu 0 310 1 1867 191 0 74 chr6 144152835 144153100 -38262142 - HERVL18 LTR ERVL -5724 323 95 2459 105 66 0 chr6 144153125 144153459 -38261783 - LTR18A LTR ERVL -1 356 1 788 225 115 35 chr6 144153460 144153882 -38261360 - LTR33 LTR ERVL -8 513 20 1872 103 8 11 chr6 144154470 144154732 -38260510 + AluSq SINE Alu 44 304 -9 1660 137 22 77 chr6 144154800 144155113 -38260129 + AluJb SINE Alu 1 296 -16 2154 158 28 52 chr6 144155186 144155410 -38259832 - MLT1B LTR MaLR 0 390 179 2303 96 3 3 chr6 144155410 144155711 -38259531 - AluSx SINE Alu -11 301 1 2154 158 28 52 chr6 144155711 144155886 -38259356 - MLT1B LTR MaLR -211 179 1 743 90 0 0 chr6 144156513 144156613 -38258629 + L1PA16 LINE L1 6058 6157 -9 21 71 0 0 chr6 144156613 144156655 -38258587 + AT_rich Low_complexity Low_complexity 1 42 0 559 240 127 0 chr6 144156774 144156924 -38258318 + MER58 DNA MER1_type 1 169 -172 2334 78 0 36 chr6 144157163 144157471 -38257771 + AluY SINE Alu 1 297 -14 242 224 15 45 chr6 144157841 144157908 -38257334 + L2 LINE L2 3206 3270 -2 436 186 36 14 chr6 144158884 144158996 -38256246 + CT-rich Low_complexity Low_complexity 3 120 -25 2009 129 62 54 chr6 144158996 144159035 -38256207 - MLT1B LTR MaLR 0 390 353 2181 117 0 0 chr6 144159035 144159365 -38255877 + AluSx SINE Alu 1 330 0 2009 129 62 54 chr6 144159365 144159709 -38255533 - MLT1B LTR MaLR -37 353 1 436 186 36 14 chr6 144159709 144159736 -38255506 + CT-rich Low_complexity Low_complexity 120 145 0 387 0 0 0 chr6 144159844 144159887 -38255355 + (CA)n Simple_repeat Simple_repeat 2 44 0 182 361 59 27 chr6 144161219 144161438 -38253804 - L2 LINE L2 -404 2910 2685 2332 87 0 0 chr6 144161611 144161909 -38253333 - AluY SINE Alu -13 298 1 6763 119 11 44 chr6 144161909 144163249 -38251993 + L1MA4 LINE L1 4987 6300 0 203 271 0 0 chr6 144163287 144163335 -38251907 + A-rich Low_complexity Low_complexity 1 48 0 210 162 0 0 chr6 144163465 144163502 -38251740 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 192 298 35 53 chr6 144163777 144163891 -38251351 - L3 LINE CR1 -454 1123 1012 193 283 9 71 chr6 144163972 144164085 -38251157 - L3 LINE CR1 -692 885 780 1052 281 76 52 chr6 144164234 144164811 -38250431 - MLT1L LTR MaLR 0 615 25 2468 114 19 6 chr6 144165059 144165418 -38249824 - THE1B LTR MaLR 0 364 1 2060 92 75 0 chr6 144165504 144165786 -38249456 + AluY SINE Alu 1 303 -8 21 0 0 0 chr6 144165872 144165893 -38249349 + AT_rich Low_complexity Low_complexity 1 21 0 1207 251 53 3 chr6 144166071 144166410 -38248832 + L1MB7 LINE L1 5781 6136 -48 613 205 0 47 chr6 144166598 144166725 -38248517 - FLAM_A SINE Alu -9 124 4 350 324 121 12 chr6 144167493 144167897 -38247345 - L1MC/D LINE L1 -1986 5822 5375 2455 80 3 0 chr6 144167940 144168241 -38247001 - AluSp SINE Alu -11 302 1 2029 114 31 14 chr6 144168650 144168939 -38246303 + AluSx SINE Alu 1 294 -18 190 91 0 45 chr6 144169032 144169076 -38246166 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 23 54 0 0 chr6 144169283 144169320 -38245922 + AT_rich Low_complexity Low_complexity 1 37 0 419 273 77 54 chr6 144170124 144170265 -38244977 + L1MC/D LINE L1 5398 5549 -572 1363 197 119 36 chr6 144170265 144170686 -38244556 - MSTB2 LTR MaLR 0 457 2 419 273 77 54 chr6 144170686 144170804 -38244438 + L1MC/D LINE L1 5549 5663 -458 2053 174 57 35 chr6 144170984 144171408 -38243834 + MLT1C LTR MaLR 3 435 -32 1467 205 15 0 chr6 144171408 144171671 -38243571 + Tigger7 DNA MER2_type 1 267 -2220 608 155 10 29 chr6 144171673 144171776 -38243466 + Tigger7 DNA MER2_type 2387 2487 0 180 255 0 20 chr6 144171831 144171882 -38243360 - L2 LINE L2 -834 2480 2431 204 379 10 0 chr6 144172535 144172638 -38242604 - MIR3 SINE MIR -51 157 54 198 0 0 0 chr6 144173856 144173878 -38241364 + (TG)n Simple_repeat Simple_repeat 2 23 0 341 104 179 0 chr6 144173881 144173948 -38241294 + L1MB4 LINE L1 6101 6179 -1 2336 117 0 0 chr6 144174436 144174745 -38240497 + AluSg SINE Alu 2 310 0 519 105 105 0 chr6 144175559 144175645 -38239597 - L1MB4 LINE L1 -1 6179 6085 1827 130 19 74 chr6 144177113 144177490 -38237752 - L1MB3 LINE L1 -76 6107 5752 2473 62 0 3 chr6 144177547 144177837 -38237405 - AluY SINE Alu -21 290 2 261 0 0 0 chr6 144177841 144177870 -38237372 + (T)n Simple_repeat Simple_repeat 1 29 0 2344 95 13 0 chr6 144178274 144178580 -38236662 + AluSx SINE Alu 1 310 -2 407 318 16 0 chr6 144178963 144179092 -38236150 - L2 LINE L2 0 3313 3183 2172 106 3 26 chr6 144179224 144179535 -38235707 - AluSp SINE Alu -9 304 1 832 169 0 0 chr6 144179561 144179700 -38235542 + FLAM_C SINE Alu 1 137 -6 2557 50 0 0 chr6 144181696 144181995 -38233247 - AluY SINE Alu -12 299 1 234 264 0 0 chr6 144182061 144182114 -38233128 + GA-rich Low_complexity Low_complexity 2 54 0 7213 125 160 62 chr6 144182359 144183904 -38231338 + pTR5 LTR ERV1 743 2438 0 517 193 57 74 chr6 144183927 144183997 -38231245 + MER34 LTR ERV1 370 440 -102 2127 138 0 0 chr6 144183997 144184294 -38230948 - AluSx SINE Alu -15 297 1 517 193 57 74 chr6 144184294 144184399 -38230843 + MER34 LTR ERV1 440 542 0 1869 154 11 3 chr6 144184628 144184914 -38230328 - AluJb SINE Alu -22 290 3 245 249 96 79 chr6 144185007 144185184 -38230058 + HAL1b LINE L1 748 927 -421 29 47 0 0 chr6 144185214 144185257 -38229985 + AT_rich Low_complexity Low_complexity 1 43 0 731 131 24 0 chr6 144185257 144185955 -38229287 + (TA)n Simple_repeat Simple_repeat 1 714 0 28 0 0 0 chr6 144185955 144185983 -38229259 + AT_rich Low_complexity Low_complexity 1 28 0 2226 131 0 0 chr6 144186253 144186566 -38228676 + AluSq SINE Alu 1 313 0 205 326 32 36 chr6 144187239 144187396 -38227846 - MIR SINE MIR 0 208 49 1143 253 59 66 chr6 144190075 144190621 -38224621 - MER34 LTR ERV1 0 542 1 494 265 67 40 chr6 144190807 144191105 -38224137 - HAL1 LINE L1 -760 1747 1442 848 163 0 0 chr6 144191115 144191256 -38223986 - FLAM_C SINE Alu -2 141 1 2407 100 19 19 chr6 144191387 144191757 -38223485 - L1PB1 LINE L1 0 6151 5782 206 195 24 0 chr6 144191757 144191798 -38223444 + (TA)n Simple_repeat Simple_repeat 1 42 0 398 179 0 14 chr6 144191798 144191877 -38223365 - L1PB1 LINE L1 -360 5791 5716 438 264 57 131 chr6 144191890 144192311 -38222931 - HAL1 LINE L1 -1274 1233 844 1403 109 42 5 chr6 144192338 144192530 -38222712 - AluSx SINE Alu -113 199 1 2030 158 0 0 chr6 144192560 144192870 -38222372 + AluSx SINE Alu 1 310 -2 248 210 270 10 chr6 144193313 144193413 -38221829 + MER5A DNA MER1_type 63 188 -1 288 248 94 43 chr6 144194631 144194748 -38220494 - L2 LINE L2 -25 3247 3125 369 273 8 16 chr6 144194963 144195091 -38220151 + MIR SINE MIR 21 147 -115 1900 169 0 0 chr6 144195579 144195869 -38219373 - AluJb SINE Alu -19 293 4 246 316 95 26 chr6 144196896 144197086 -38218156 - MIR SINE MIR -15 247 45 22 0 0 0 chr6 144197385 144197407 -38217835 + AT_rich Low_complexity Low_complexity 1 22 0 1413 174 60 29 chr6 144197728 144198009 -38217233 - AluJo SINE Alu -22 290 1 619 278 99 9 chr6 144198669 144198881 -38216361 + MIR SINE MIR 8 238 -24 181 324 54 0 chr6 144198947 144199021 -38216221 + MIR SINE MIR 71 148 -114 2417 88 0 0 chr6 144200198 144200494 -38214748 - AluSx SINE Alu -13 299 4 556 262 47 0 chr6 144200672 144200844 -38214398 + L1MD3 LINE L1 7808 7987 -8 1992 122 7 14 chr6 144200844 144201138 -38214104 - AluJb SINE Alu -19 293 2 1606 179 10 91 chr6 144202074 144202482 -38212760 + MER65A LTR ERV1 69 443 -2 1113 248 127 8 chr6 144203392 144203893 -38211349 - L2 LINE L2 -2 3311 2754 2124 126 30 3 chr6 144204009 144204310 -38210932 - AluSx SINE Alu -3 309 1 2297 115 0 0 chr6 144204336 144204632 -38210610 + AluSx SINE Alu 1 296 -16 312 224 40 13 chr6 144204730 144204806 -38210436 + L1MC4 LINE L1 6755 6832 -1210 216 0 0 0 chr6 144205117 144205141 -38210101 + (GAA)n Simple_repeat Simple_repeat 2 25 0 189 171 0 0 chr6 144205308 144205343 -38209899 + (CA)n Simple_repeat Simple_repeat 2 36 0 906 232 110 13 chr6 144205797 144206107 -38209135 + L2 LINE L2 1139 1478 -1836 798 291 48 49 chr6 144207092 144207825 -38207417 - L2 LINE L2 -24 3289 2551 315 263 134 49 chr6 144207905 144208152 -38207090 - L2 LINE L2 -756 2558 2291 2085 119 0 7 chr6 144209065 144209373 -38205869 - AluSq SINE Alu 0 308 3 186 380 9 19 chr6 144209876 144209984 -38205258 - L2 LINE L2 -20 3293 3187 2328 112 0 0 chr6 144211506 144211818 -38203424 - AluSx SINE Alu 0 312 1 209 284 18 46 chr6 144211839 144211948 -38203294 + L2 LINE L2 3168 3273 -40 975 217 25 5 chr6 144211949 144212152 -38203090 + MER72 LTR ERV1 1 207 -515 974 189 9 52 chr6 144212216 144212428 -38202814 + MER72 LTR ERV1 244 446 -276 910 140 0 0 chr6 144212479 144212622 -38202620 + AluSg/x SINE Alu 170 312 0 1612 158 11 0 chr6 144212745 144213011 -38202231 + MER72 LTR ERV1 454 722 0 310 329 62 7 chr6 144213039 144213185 -38202057 - MIR SINE MIR -10 252 99 25 0 0 0 chr6 144213571 144213596 -38201646 + AT_rich Low_complexity Low_complexity 1 25 0 2168 130 3 0 chr6 144213760 144214060 -38201182 - AluSx SINE Alu -11 301 1 183 100 0 0 chr6 144214826 144214856 -38200386 + (CA)n Simple_repeat Simple_repeat 1 30 0 190 0 67 0 chr6 144216428 144216458 -38198784 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2550 62 0 0 chr6 144216464 144216756 -38198486 - AluY SINE Alu -19 292 1 645 291 153 42 chr6 144267467 144267972 -38147270 - L2 LINE L2 -943 2371 1811 1001 274 24 24 chr6 144267977 144268306 -38146936 + MER46C DNA MER2_type 1 329 -9 488 280 24 16 chr6 144268742 144268867 -38146375 - L2 LINE L2 -2048 1266 1141 24 0 0 0 chr6 144268957 144268981 -38146261 + AT_rich Low_complexity Low_complexity 1 24 0 267 341 63 47 chr6 144269063 144269362 -38145880 - L2 LINE L2 -2547 767 464 22 0 0 0 chr6 144270240 144270262 -38144980 + AT_rich Low_complexity Low_complexity 1 22 0 313 255 11 53 chr6 144270647 144270741 -38144501 + MIR SINE MIR 42 131 -77 251 220 189 57 chr6 144271041 144271200 -38144042 - MIR3 SINE MIR -25 183 4 184 321 64 9 chr6 144271554 144271663 -38143579 + L2 LINE L2 3193 3307 -6 266 284 164 12 chr6 144271854 144272001 -38143241 - MIR SINE MIR -48 214 54 2195 55 41 31 chr6 144272399 144272690 -38142552 - AluY SINE Alu -17 294 1 252 250 0 0 chr6 144273784 144273852 -38141390 + L1P LINE L1 4879 4946 -1200 1554 164 14 45 chr6 144273997 144274289 -38140953 + AluJo SINE Alu 6 288 -24 2226 115 3 3 chr6 144274383 144274687 -38140555 + AluSq SINE Alu 1 304 -9 291 276 159 12 chr6 144274821 144275043 -38140199 + L1ME LINE L1 5631 5807 -314 23 0 0 0 chr6 144275203 144275226 -38140016 + AT_rich Low_complexity Low_complexity 1 23 0 183 133 0 0 chr6 144275661 144275691 -38139551 - L2 LINE L2 -4 3268 3239 730 234 100 43 chr6 144275804 144276035 -38139207 + MIR SINE MIR 2 245 -17 378 330 172 8 chr6 144276203 144276464 -38138778 - L2 LINE L2 -458 2856 2553 796 251 97 16 chr6 144276497 144276816 -38138426 - MER2 DNA MER2_type 0 345 1 180 320 147 0 chr6 144277137 144277212 -38138030 - L2 LINE L2 -46 3267 3182 1751 146 6 62 chr6 144277495 144277817 -38137425 + AluJb SINE Alu 1 304 -8 225 247 222 0 chr6 144278071 144278152 -38137090 - MIR3 SINE MIR -39 169 71 2024 133 3 7 chr6 144278342 144278643 -38136599 - AluSx SINE Alu -12 300 1 2187 102 3 7 chr6 144278643 144278946 -38136296 - AluSx SINE Alu -10 302 1 219 311 198 9 chr6 144279471 144279577 -38135665 + L2 LINE L2 3179 3304 -9 21 36 0 0 chr6 144281407 144281435 -38133807 + AT_rich Low_complexity Low_complexity 1 28 0 657 303 34 25 chr6 144281779 144282017 -38133225 - MIR SINE MIR -3 259 20 281 183 28 14 chr6 144283447 144283518 -38131724 + L1MB2 LINE L1 5581 5652 -469 234 188 62 0 chr6 144283620 144283668 -38131574 + L1MB2 LINE L1 5972 6022 -149 492 333 12 6 chr6 144283806 144283968 -38131274 + MIR SINE MIR 56 218 -44 2408 73 0 0 chr6 144285923 144286226 -38129016 + AluY SINE Alu 1 303 -8 21 57 0 0 chr6 144286851 144286886 -38128356 + AT_rich Low_complexity Low_complexity 1 35 0 2562 68 0 0 chr6 144286919 144287230 -38128012 + AluY SINE Alu 1 311 0 287 300 55 0 chr6 144288752 144288862 -38126380 + HAL1b LINE L1 429 544 -804 21 57 0 0 chr6 144288904 144288939 -38126303 + AT_rich Low_complexity Low_complexity 1 35 0 2041 137 13 0 chr6 144289670 144289977 -38125265 + AluSx SINE Alu 1 311 -1 1796 145 21 7 chr6 144290537 144290826 -38124416 - AluJb SINE Alu -19 293 1 225 244 122 0 chr6 144291382 144291464 -38123778 + L1MC4a LINE L1 3711 3802 -2344 264 149 0 0 chr6 144292118 144292165 -38123077 + (CA)n Simple_repeat Simple_repeat 1 47 0 231 261 127 30 chr6 144292286 144292420 -38122822 + L1MC4a LINE L1 5457 5603 -518 424 266 85 31 chr6 144292449 144292771 -38122471 + L1MC4a LINE L1 5694 6032 -89 416 241 56 96 chr6 144292812 144293061 -38122181 - L2 LINE L2 -30 3283 3045 183 214 18 27 chr6 144293416 144293528 -38121714 + A-rich Low_complexity Low_complexity 2 112 0 2722 186 82 34 chr6 144293550 144294172 -38121070 - MER82 DNA MER2_type 0 653 2 194 333 60 22 chr6 144294214 144294397 -38120845 - L2 LINE L2 -779 2535 2346 695 213 0 22 chr6 144294593 144294729 -38120513 - FLAM_A SINE Alu 0 133 1 23 101 0 0 chr6 144295872 144295951 -38119291 + AT_rich Low_complexity Low_complexity 1 79 0 2314 90 0 0 chr6 144297122 144297411 -38117831 + AluSx SINE Alu 1 289 -23 363 264 86 31 chr6 144297618 144297781 -38117461 + MER5A DNA MER1_type 18 189 0 2113 87 36 0 chr6 144297931 144298208 -38117034 + AluSc SINE Alu 1 287 -22 2502 56 0 34 chr6 144298219 144298541 -38116701 + AluY SINE Alu 1 311 0 21 0 0 0 chr6 144298628 144298649 -38116593 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 144301578 144301617 -38113625 + AT_rich Low_complexity Low_complexity 1 39 0 1948 140 3 19 chr6 144301791 144302106 -38113136 + AluSx SINE Alu 1 310 -2 2208 107 7 3 chr6 144303102 144303410 -38111832 - AluSx SINE Alu -3 309 1 22 70 0 0 chr6 144303491 144303534 -38111708 + AT_rich Low_complexity Low_complexity 1 43 0 278 0 0 51 chr6 144304119 144304158 -38111084 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2314 99 0 13 chr6 144305287 144305599 -38109643 + AluSq SINE Alu 1 308 -5 428 295 76 5 chr6 144305869 144306079 -38109163 + Tigger8 DNA MER2_type 315 539 -127 512 191 21 85 chr6 144307251 144307440 -38107802 + MER104 DNA Tc2 4 180 0 233 208 0 0 chr6 144307861 144307909 -38107333 + MADE1 DNA Mariner 1 48 -32 340 277 37 90 chr6 144308173 144308314 -38106928 - MER5A DNA MER1_type 0 189 48 2170 104 3 13 chr6 144308314 144308612 -38106630 + AluSx SINE Alu 1 295 -17 340 277 37 90 chr6 144308612 144308658 -38106584 - MER5A DNA MER1_type -141 48 1 677 174 0 0 chr6 144309337 144309446 -38105796 + FLAM_C SINE Alu 1 109 -34 181 266 93 81 chr6 144310130 144310223 -38105019 + L2 LINE L2 2485 2575 -739 414 194 226 13 chr6 144310223 144310378 -38104864 - MER5A DNA MER1_type -1 188 1 181 266 93 81 chr6 144310378 144310532 -38104710 + L2 LINE L2 2575 2735 -579 1273 205 126 110 chr6 144310765 144311544 -38103698 + LTR50 LTR ERVL 3 793 -2 1852 140 66 23 chr6 144311849 144312199 -38103043 - MLT1A1 LTR MaLR 0 365 1 2384 93 0 0 chr6 144312331 144312632 -38102610 - AluSq SINE Alu -12 301 1 23 68 0 0 chr6 144313207 144313251 -38101991 + AT_rich Low_complexity Low_complexity 1 44 0 2379 91 7 0 chr6 144313706 144314014 -38101228 + AluSg SINE Alu 1 310 0 335 322 27 13 chr6 144314221 144314370 -38100872 + L2 LINE L2 2938 3088 -225 21 36 0 0 chr6 144314493 144314521 -38100721 + AT_rich Low_complexity Low_complexity 1 28 0 1501 143 85 41 chr6 144315075 144315369 -38099873 + AluJo SINE Alu 1 307 -5 1765 139 7 14 chr6 144317982 144318277 -38096965 + AluJo SINE Alu 1 293 -19 2167 100 0 17 chr6 144319132 144319423 -38095819 + AluSc SINE Alu 1 286 -23 2126 94 0 14 chr6 144319748 144320045 -38095197 + AluSq SINE Alu 1 293 -20 241 289 210 18 chr6 144320056 144320263 -38094979 + MIR SINE MIR 1 250 -12 184 238 270 0 chr6 144320293 144320356 -38094886 + L2 LINE L2 3193 3272 0 584 175 73 0 chr6 144320494 144320631 -38094611 - L1MA10 LINE L1 -8 6326 6180 2018 206 60 29 chr6 144320676 144321195 -38094047 - L1ME1 LINE L1 -141 6025 5491 2186 96 0 13 chr6 144321222 144321525 -38093717 + AluSg SINE Alu 1 299 -11 594 256 10 44 chr6 144321525 144321728 -38093514 + L1ME3 LINE L1 5967 6162 0 826 160 0 0 chr6 144321840 144321971 -38093271 - FLAM_C SINE Alu -11 132 2 1876 120 58 0 chr6 144322267 144322541 -38092701 + AluSg SINE Alu 1 290 -20 180 152 0 0 chr6 144322922 144322955 -38092287 + CT-rich Low_complexity Low_complexity 2 34 0 354 323 78 92 chr6 144323637 144324073 -38091169 + L2 LINE L2 2835 3264 -8 1228 164 12 4 chr6 144324258 144324502 -38090740 + L1MB7 LINE L1 5642 5887 -291 1065 194 4 40 chr6 144324615 144324868 -38090374 + L1MB7 LINE L1 5893 6136 -48 231 179 0 0 chr6 144324868 144324907 -38090335 - Alu SINE Alu -12 290 252 992 137 0 13 chr6 144324911 144325064 -38090178 - AluJo SINE Alu -161 151 1 3363 126 68 24 chr6 144325079 144325107 -38090135 + LTR9 LTR ERV1 1 26 -586 1973 117 72 7 chr6 144325107 144325398 -38089844 + AluSx SINE Alu 1 310 -2 3363 126 68 24 chr6 144325398 144325955 -38089287 + LTR9 LTR ERV1 26 612 0 2344 90 3 0 chr6 144326043 144326344 -38088898 - AluSx SINE Alu -8 304 3 1594 161 3 28 chr6 144326528 144326656 -38088586 - AluJb SINE Alu -20 292 162 3547 126 66 3 chr6 144326656 144327229 -38088013 + MER4B LTR ERV1 1 609 -1 1594 161 3 28 chr6 144327229 144327391 -38087851 - AluJb SINE Alu -150 162 9 444 283 36 12 chr6 144327392 144327558 -38087684 + MIR SINE MIR 86 255 -7 2209 93 30 0 chr6 144327995 144328297 -38086945 + AluSx SINE Alu 1 311 -1 343 253 0 0 chr6 144329561 144329640 -38085602 + MLT1G LTR MaLR 1 79 -516 2230 123 131 11 chr6 144329640 144330022 -38085220 + MSTA LTR MaLR 1 428 0 778 255 264 25 chr6 144330067 144330514 -38084728 + MLT1G LTR MaLR 37 590 0 24 0 0 0 chr6 144331029 144331053 -38084189 + AT_rich Low_complexity Low_complexity 1 24 0 2139 113 0 3 chr6 144331063 144331354 -38083888 + AluSg SINE Alu 1 290 -20 2160 107 7 3 chr6 144331358 144331649 -38083593 + AluSg SINE Alu 1 292 -18 208 342 88 26 chr6 144332623 144332737 -38082505 + MIR3 SINE MIR 63 183 -25 2316 109 3 0 chr6 144332740 144333042 -38082200 - AluSx SINE Alu -9 303 1 1882 155 0 38 chr6 144333187 144333504 -38081738 - AluJo SINE Alu -7 305 1 24 0 0 0 chr6 144333662 144333686 -38081556 + AT_rich Low_complexity Low_complexity 1 24 0 1179 195 65 17 chr6 144333838 144334159 -38081083 - MSTD LTR MaLR 0 396 2 1528 204 58 14 chr6 144334219 144334567 -38080675 + MLT1A1 LTR MaLR 1 363 -2 389 325 123 75 chr6 144334624 144334879 -38080363 + L3 LINE CR1 1142 1426 -151 2371 53 0 3 chr6 144334879 144335179 -38080063 - AluY SINE Alu -11 300 2 389 325 123 75 chr6 144335179 144335338 -38079904 + L3 LINE CR1 1426 1576 -1 27 0 0 0 chr6 144336373 144336400 -38078842 + AT_rich Low_complexity Low_complexity 1 27 0 291 169 12 24 chr6 144337970 144338053 -38077189 + CT-rich Low_complexity Low_complexity 3 84 0 2204 85 11 0 chr6 144338608 144338913 -38076329 - AluSq SINE Alu 0 308 1 628 220 83 0 chr6 144338913 144339045 -38076197 - FRAM SINE Alu -14 162 20 1939 126 6 41 chr6 144339056 144339373 -38075869 - AluSx SINE Alu -6 306 1 209 342 0 53 chr6 144339505 144339581 -38075661 - L2 LINE L2 0 3272 3201 445 309 69 74 chr6 144339681 144340073 -38075169 + L2 LINE L2 2883 3272 0 543 219 62 56 chr6 144340653 144340770 -38074472 + LTR50 LTR ERVL 32 152 -643 2252 77 7 7 chr6 144340770 144341069 -38074173 + AluY SINE Alu 2 300 -11 543 219 62 56 chr6 144341069 144341129 -38074113 + LTR50 LTR ERVL 152 210 -585 812 253 73 4 chr6 144341374 144341635 -38073607 - LTR50 LTR ERVL -113 682 404 1817 154 26 7 chr6 144341920 144342271 -38072971 + THE1C LTR MaLR 5 420 -12 771 223 0 7 chr6 144342275 144342458 -38072784 + FRAM SINE Alu 1 46 0 33 43 0 0 chr6 144342587 144342634 -38072608 + AT_rich Low_complexity Low_complexity 1 47 0 2179 214 61 69 chr6 144343472 144343997 -38071245 + L1M4 LINE L1 780 1308 -5338 2258 123 3 0 chr6 144343997 144344307 -38070935 - AluJb SINE Alu -1 311 1 2179 214 61 69 chr6 144344307 144345129 -38070113 + L1M4 LINE L1 1308 2103 -4543 2221 124 0 0 chr6 144345241 144345540 -38069702 + AluSx SINE Alu 1 299 -13 267 255 89 43 chr6 144345540 144345775 -38069467 + L1M4 LINE L1 2306 2551 -4095 561 209 99 35 chr6 144346188 144346389 -38068853 - L1M4 LINE L1 -1678 4468 4255 549 268 80 29 chr6 144346475 144346714 -38068528 + L1ME LINE L1 5539 5789 -332 21 57 0 0 chr6 144347714 144347749 -38067493 + AT_rich Low_complexity Low_complexity 1 35 0 1632 136 58 0 chr6 144347793 144348050 -38067192 - AluJb SINE Alu -5 307 36 357 167 0 0 chr6 144349702 144349780 -38065462 + A-rich Low_complexity Low_complexity 1 78 0 386 318 144 15 chr6 144349817 144350012 -38065230 + MIR SINE MIR 35 254 -8 205 203 0 6 chr6 144351020 144351058 -38064184 - L2 LINE L2 -17 3296 3218 510 304 69 28 chr6 144351091 144351338 -38063904 + L2 LINE L2 3005 3261 -52 624 250 40 0 chr6 144351533 144351721 -38063521 + MER63A DNA MER1_type 14 210 0 1068 268 136 25 chr6 144353447 144353661 -38061581 - HsTC2 DNA Tc2 -1329 569 380 2117 176 29 58 chr6 144353661 144354178 -38061064 + MLT1D LTR MaLR 1 502 -3 1068 268 136 25 chr6 144354178 144354449 -38060793 - HsTC2 DNA Tc2 -1518 380 30 537 118 0 0 chr6 144354449 144354525 -38060717 + FLAM_A SINE Alu 43 118 -24 2166 129 3 19 chr6 144354908 144355225 -38060017 - AluSx SINE Alu 0 312 1 198 285 65 70 chr6 144355278 144355478 -38059764 + L2 LINE L2 2607 2805 -509 320 365 26 19 chr6 144355778 144355934 -38059308 + L2 LINE L2 2886 3042 -230 828 139 31 0 chr6 144356077 144356206 -38059036 - FLAM_C SINE Alu 0 133 1 467 237 266 12 chr6 144356226 144356399 -38058843 + MIR SINE MIR 43 259 -3 236 209 100 64 chr6 144356643 144356753 -38058489 + MIR SINE MIR 149 262 0 976 164 13 6 chr6 144356945 144357104 -38058138 + FRAM SINE Alu 1 159 -17 225 154 0 0 chr6 144357421 144357460 -38057782 + A-rich Low_complexity Low_complexity 1 39 0 24 53 0 0 chr6 144358931 144358969 -38056273 + AT_rich Low_complexity Low_complexity 1 38 0 585 294 68 6 chr6 144359275 144359452 -38055790 - MIR SINE MIR -36 226 39 424 297 91 6 chr6 144359724 144359899 -38055343 + MIR SINE MIR 60 249 -13 303 242 147 0 chr6 144360350 144360445 -38054797 - L1ME4a LINE L1 -3 6118 6010 436 271 259 15 chr6 144360486 144360748 -38054494 - L1ME4a LINE L1 -202 5919 5594 305 285 38 51 chr6 144360837 144360995 -38054247 - L1ME4a LINE L1 -2361 5447 5292 1829 168 13 3 chr6 144361086 144361389 -38053853 - AluSx SINE Alu 0 312 7 25 0 0 0 chr6 144361630 144361655 -38053587 + AT_rich Low_complexity Low_complexity 1 25 0 447 52 0 0 chr6 144362471 144362529 -38052713 + (TG)n Simple_repeat Simple_repeat 2 59 0 2323 102 0 0 chr6 144362690 144362985 -38052257 - AluSx SINE Alu -17 295 1 2140 138 3 0 chr6 144363415 144363727 -38051515 - AluSq SINE Alu 0 313 1 4071 178 38 14 chr6 144364226 144364247 -38050995 - L1MB4 LINE L1 -31 6149 6130 1711 80 0 0 chr6 144364247 144364459 -38050783 - AluSc SINE Alu -22 287 76 4071 178 38 14 chr6 144364459 144365622 -38049620 - L1MB4 LINE L1 -50 6130 4938 2228 114 0 6 chr6 144366330 144366645 -38048597 - AluSq SINE Alu 0 313 1 1008 147 4 6 chr6 144367019 144367190 -38048052 - MER45A DNA AcHobo -3 175 5 238 206 32 32 chr6 144367708 144367771 -38047471 - LTR16C LTR ERVL -241 250 188 1100 266 66 70 chr6 144367957 144368539 -38046703 - L2 LINE L2 -24 3289 2704 227 111 0 22 chr6 144368803 144368848 -38046394 + (TTTTC)n Simple_repeat Simple_repeat 3 46 0 2138 126 0 0 chr6 144369894 144370180 -38045062 - AluSx SINE Alu -26 286 1 2215 82 0 11 chr6 144370815 144371096 -38044146 - AluSq SINE Alu -35 278 1 389 294 64 25 chr6 144372054 144372490 -38042752 - L1MB4 LINE L1 -1542 4604 4152 2319 116 0 0 chr6 144373316 144373626 -38041616 - AluSx SINE Alu -1 311 2 231 191 0 0 chr6 144373636 144373683 -38041559 - L1MB4 LINE L1 -2302 3844 3798 412 324 32 59 chr6 144373767 144374140 -38041102 + L1MC4a LINE L1 4877 5239 -907 911 288 140 19 chr6 144374173 144374760 -38040482 + L1MC4a LINE L1 5259 5916 -1892 277 125 0 71 chr6 144374830 144374877 -38040365 + Charlie1 DNA MER1_type 57 101 -1354 2292 102 3 0 chr6 144374877 144375171 -38040071 + AluSq SINE Alu 1 295 -18 6188 132 7 8 chr6 144375184 144376647 -38038595 + L1PB1 LINE L1 4690 6151 0 2591 170 14 2 chr6 144378649 144379143 -38036099 + MER45B DNA AcHobo 534 1033 -7 356 302 128 12 chr6 144381544 144381716 -38033526 + MIR SINE MIR 11 202 -60 2410 88 0 0 chr6 144382393 144382698 -38032544 - AluSq SINE Alu -8 305 1 1057 88 27 0 chr6 144382699 144382847 -38032395 - L1PA8 LINE L1 0 6172 6021 24 0 0 0 chr6 144383416 144383440 -38031802 + AT_rich Low_complexity Low_complexity 1 24 0 215 313 10 10 chr6 144383948 144384044 -38031198 + GA-rich Low_complexity Low_complexity 5 100 0 313 306 16 40 chr6 144384989 144385113 -38030129 - MIR SINE MIR 0 262 142 2264 119 0 0 chr6 144385632 144385934 -38029308 + AluSg SINE Alu 1 302 -8 762 278 65 16 chr6 144386217 144386462 -38028780 + MIR SINE MIR 5 261 -1 201 267 188 10 chr6 144387035 144387136 -38028106 + L2 LINE L2 2550 2668 -646 208 281 141 23 chr6 144387204 144387332 -38027910 - L2 LINE L2 0 3313 3171 195 301 65 11 chr6 144387379 144387472 -38027770 + MIR SINE MIR 110 207 -55 23 54 0 0 chr6 144388062 144388099 -38027143 + AT_rich Low_complexity Low_complexity 1 37 0 505 344 72 46 chr6 144388648 144388910 -38026332 + L3 LINE CR1 1054 1322 -255 459 330 37 0 chr6 144389038 144389229 -38026013 + L3 LINE CR1 1305 1502 -75 255 167 0 0 chr6 144389238 144389280 -38025962 + L1PBa LINE L1 157 198 -6665 * 5949 124 5 0 chr6 144389276 144390138 -38025104 + L1PBa LINE L1 995 1860 -5003 2113 117 3 0 chr6 144390140 144390465 -38024777 + AluSp SINE Alu 1 326 0 2526 82 9 0 chr6 144390465 144390782 -38024460 + L1PB1 LINE L1 5832 6151 0 22 0 0 0 chr6 144390782 144390804 -38024438 + AT_rich Low_complexity Low_complexity 1 22 0 247 315 9 63 chr6 144391719 144391830 -38023412 - L2 LINE L2 -263 3050 2946 256 336 20 20 chr6 144392310 144392456 -38022786 + LTR16C LTR ERVL 346 491 0 462 258 16 119 chr6 144392456 144392509 -38022733 - MIR SINE MIR -60 202 145 2015 113 3 30 chr6 144392509 144392810 -38022432 - AluSg SINE Alu 0 310 18 462 258 16 119 chr6 144392810 144392950 -38022292 - MIR SINE MIR -117 145 29 898 164 4 91 chr6 144393322 144393554 -38021688 - MER96B DNA MER1_type? -19 398 187 814 212 36 6 chr6 144394088 144394253 -38020989 + AluJo SINE Alu 121 290 -22 2170 109 0 3 chr6 144394258 144394551 -38020691 + AluSx SINE Alu 1 292 -20 781 190 0 0 chr6 144394565 144394681 -38020561 - FLAM_C SINE Alu -25 118 3 326 0 0 64 chr6 144394683 144394730 -38020512 + (A)n Simple_repeat Simple_repeat 1 44 0 2020 149 3 0 chr6 144396246 144396542 -38018700 + AluSx SINE Alu 3 299 -13 3742 155 62 9 chr6 144396588 144397227 -38018015 + L1MC1 LINE L1 5632 6309 -24 2075 140 0 3 chr6 144397227 144397527 -38017715 + AluJb SINE Alu 1 299 -13 3742 155 62 9 chr6 144397527 144397553 -38017689 + L1MC1 LINE L1 6309 6332 -1 212 0 36 0 chr6 144398097 144398125 -38017117 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2118 133 0 13 chr6 144398151 144398451 -38016791 - AluSx SINE Alu -16 296 1 265 300 106 41 chr6 144399423 144399593 -38015649 - MIR SINE MIR -61 201 21 286 194 92 53 chr6 144399702 144399820 -38015422 + MIR SINE MIR 59 190 -18 534 115 138 0 chr6 144400997 144401084 -38014158 - AluJ/FRAM SINE Alu 0 312 214 1153 76 101 13 chr6 144401122 144401280 -38013962 + AluSc SINE Alu 121 292 -17 610 193 88 0 chr6 144401280 144401394 -38013848 - AluJo/FLAM SINE Alu -178 124 1 2270 104 30 0 chr6 144401741 144402039 -38013203 - AluSq SINE Alu -6 307 1 2217 102 0 0 chr6 144402624 144402908 -38012334 + AluSx SINE Alu 6 289 -23 1456 111 0 0 chr6 144402908 144403106 -38012136 + AluSg/x SINE Alu 109 306 -6 2342 104 0 0 chr6 144403657 144403955 -38011287 + AluSg SINE Alu 2 299 -11 255 125 0 0 chr6 144404171 144404211 -38011031 + (GGGAA)n Simple_repeat Simple_repeat 4 43 0 523 232 8 24 chr6 144404468 144404593 -38010649 + MER63A DNA MER1_type 88 210 0 676 303 32 99 chr6 144404621 144405057 -38010185 + L2 LINE L2 2864 3270 -2 2123 126 0 0 chr6 144405204 144405497 -38009745 - AluSx SINE Alu -19 293 1 1979 142 7 0 chr6 144405749 144406038 -38009204 + AluJb SINE Alu 1 291 -21 230 368 44 0 chr6 144406254 144406368 -38008874 - MIR SINE MIR -140 122 4 203 298 139 63 chr6 144406988 144407146 -38008096 - MIR SINE MIR -10 252 83 726 242 18 24 chr6 144407458 144407623 -38007619 + MER5B DNA MER1_type 1 164 -14 379 111 28 56 chr6 144407940 144408012 -38007230 + MER41B LTR ERV1 478 547 -88 209 59 59 0 chr6 144408012 144408046 -38007196 + GA-rich Low_complexity Low_complexity 3 38 0 234 0 0 0 chr6 144409850 144409876 -38005366 + (TA)n Simple_repeat Simple_repeat 2 27 0 421 321 50 14 chr6 144410454 144410594 -38004648 + MER102b DNA MER1_type 146 290 -51 344 155 14 0 chr6 144411183 144411254 -38003988 + GA-rich Low_complexity Low_complexity 3 74 0 22 0 0 0 chr6 144412574 144412596 -38002646 + AT_rich Low_complexity Low_complexity 1 22 0 33000 109 10 55 chr6 144413113 144419548 -37995694 - L1PA7 LINE L1 0 6154 12 2011 111 57 0 chr6 144419779 144420059 -37995183 - AluSq SINE Alu -17 296 1 524 307 11 11 chr6 144420120 144420299 -37994943 + MIR SINE MIR 72 250 -12 1200 299 91 43 chr6 144420545 144420829 -37994413 - L2 LINE L2 -1 3312 3043 2109 131 0 7 chr6 144420829 144421134 -37994108 + AluSx SINE Alu 1 303 -9 1200 299 91 43 chr6 144421134 144421372 -37993870 - L2 LINE L2 -270 3043 2818 1529 202 0 23 chr6 144421372 144421674 -37993568 - AluJo SINE Alu -17 295 1 1200 299 91 43 chr6 144421674 144422111 -37993131 - L2 LINE L2 -495 2818 2248 994 115 0 0 chr6 144422113 144422252 -37992990 + FRAM SINE Alu 38 176 0 371 271 125 35 chr6 144422921 144423297 -37991945 + L2 LINE L2 2127 2536 -778 2116 137 10 0 chr6 144423336 144423635 -37991607 - AluSx SINE Alu -10 302 1 268 288 15 15 chr6 144423888 144423954 -37991288 - MER91B DNA MER1_type -124 66 1 1074 183 0 0 chr6 144425901 144426076 -37989166 + AluJb SINE Alu 137 311 -1 26 0 0 0 chr6 144426631 144426657 -37988585 + AT_rich Low_complexity Low_complexity 1 26 0 267 31 0 0 chr6 144427070 144427102 -37988140 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2225 100 0 0 chr6 144427102 144427382 -37987860 - AluSx SINE Alu -32 280 1 311 154 22 22 chr6 144427574 144427665 -37987577 + (TA)n Simple_repeat Simple_repeat 1 91 0 2746 107 8 0 chr6 144428433 144428799 -37986443 - L1PA13 LINE L1 -19 6144 5776 2053 134 3 10 chr6 144429258 144429571 -37985671 + AluJo SINE Alu 2 312 0 267 280 110 17 chr6 144429684 144429802 -37985440 + L2 LINE L2 3133 3261 -11 1978 103 0 26 chr6 144429822 144430095 -37985147 + AluSg SINE Alu 39 304 -6 487 309 108 0 chr6 144430873 144431067 -37984175 + MIR SINE MIR 46 260 -2 306 333 44 38 chr6 144431136 144431319 -37983923 - MIR SINE MIR -50 212 29 666 202 8 0 chr6 144431584 144431708 -37983534 + MER3 DNA MER1_type 37 161 -48 36 23 0 0 chr6 144431748 144431791 -37983451 + AT_rich Low_complexity Low_complexity 1 43 0 1421 155 4 11 chr6 144431830 144432095 -37983147 + MER3 DNA MER1_type 2256 2518 0 1998 125 4 0 chr6 144432096 144432368 -37982874 + AluSx SINE Alu 18 290 -22 192 152 0 0 chr6 144432369 144432402 -37982840 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 298 216 34 11 chr6 144432446 144432534 -37982708 + MER3 DNA MER1_type 2496 2585 0 185 316 123 9 chr6 144432798 144432909 -37982333 - L2 LINE L2 -1 3312 3189 467 259 94 35 chr6 144432909 144433079 -37982163 + MER5A DNA MER1_type 1 180 -9 296 284 152 46 chr6 144433607 144433804 -37981438 - L2 LINE L2 -700 2614 2397 750 149 0 0 chr6 144434371 144434478 -37980764 + FLAM_A SINE Alu 26 132 -10 308 195 0 0 chr6 144434511 144434588 -37980654 + L1MA5 LINE L1 6215 6291 -9 198 0 0 0 chr6 144435174 144435196 -37980046 + (A)n Simple_repeat Simple_repeat 1 22 0 409 266 22 104 chr6 144435675 144435894 -37979348 + MIR SINE MIR 1 202 -60 25 0 0 0 chr6 144435941 144435966 -37979276 + AT_rich Low_complexity Low_complexity 1 25 0 295 274 127 97 chr6 144436001 144436129 -37979113 - L2 LINE L2 -11 3261 3138 743 70 31 0 chr6 144436129 144436257 -37978985 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 295 274 127 97 chr6 144436257 144436552 -37978690 - L2 LINE L2 -134 3138 2825 295 293 80 53 chr6 144436769 144436957 -37978285 - L2 LINE L2 -557 2757 2565 197 326 34 11 chr6 144437141 144437230 -37978012 - MIR3 SINE MIR -7 201 111 2284 101 7 0 chr6 144437488 144437796 -37977446 + AluSg SINE Alu 1 310 0 189 0 0 0 chr6 144438012 144438033 -37977209 + (GAGAA)n Simple_repeat Simple_repeat 3 23 0 266 137 0 20 chr6 144438036 144438087 -37977155 - MER112 DNA MER1_type -117 143 94 812 124 0 25 chr6 144438103 144438224 -37977018 - FLAM_C SINE Alu -25 118 1 201 74 0 0 chr6 144438241 144438268 -37976974 + (TG)n Simple_repeat Simple_repeat 2 28 0 2323 80 0 3 chr6 144438321 144438609 -37976633 + AluSq SINE Alu 1 287 -26 1659 190 84 9 chr6 144438934 144439281 -37975961 + MER63B DNA MER1_type 4 376 -60 188 249 45 107 chr6 144439324 144439501 -37975741 + L2 LINE L2 2264 2429 -885 22 0 0 0 chr6 144439995 144440017 -37975225 + AT_rich Low_complexity Low_complexity 1 22 0 1815 172 0 14 chr6 144440772 144441063 -37974179 + AluJb SINE Alu 1 287 -25 22 0 0 0 chr6 144441068 144441090 -37974152 + AT_rich Low_complexity Low_complexity 1 22 0 424 323 0 23 chr6 144441164 144441294 -37973948 + MER5A DNA MER1_type 49 175 -14 1402 112 98 0 chr6 144441294 144441499 -37973743 - MER30 DNA MER1_type 0 230 6 636 188 65 32 chr6 144441570 144441724 -37973518 + MER58C DNA MER1_type 56 214 -1 306 0 0 0 chr6 144443165 144443199 -37972043 + (T)n Simple_repeat Simple_repeat 1 34 0 22 103 0 0 chr6 144443800 144443878 -37971364 + GC_rich Low_complexity Low_complexity 1 78 0 285 135 0 0 chr6 144444090 144444142 -37971100 + (TCC)n Simple_repeat Simple_repeat 3 54 0 42 20 0 0 chr6 144444308 144444357 -37970885 + GC_rich Low_complexity Low_complexity 1 49 0 198 0 0 0 chr6 144445768 144445790 -37969452 + (T)n Simple_repeat Simple_repeat 1 22 0 28 0 0 0 chr6 144445875 144445903 -37969339 + GC_rich Low_complexity Low_complexity 1 28 0 536 193 82 58 chr6 144446606 144446777 -37968465 - MIR3 SINE MIR -19 189 15 207 0 0 0 chr6 144447084 144447107 -37968135 + (T)n Simple_repeat Simple_repeat 1 23 0 421 311 134 52 chr6 144448955 144449321 -37965921 + L2 LINE L2 2877 3272 0 315 264 38 162 chr6 144450187 144450452 -37964790 - MIR SINE MIR -13 249 18 29 98 0 0 chr6 144450803 144450895 -37964347 + AT_rich Low_complexity Low_complexity 1 92 0 2306 115 3 0 chr6 144451259 144451571 -37963671 - AluSq SINE Alu 0 313 1 214 283 177 26 chr6 144453306 144453419 -37961823 + MIR SINE MIR 85 214 -48 1676 178 19 25 chr6 144453540 144453854 -37961388 - AluJo SINE Alu 0 312 1 199 353 88 7 chr6 144455471 144455607 -37959635 - MIR SINE MIR -100 162 16 24 32 0 0 chr6 144456294 144456325 -37958917 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr6 144460764 144460799 -37954443 + AT_rich Low_complexity Low_complexity 1 35 0 667 167 6 101 chr6 144460873 144460922 -37954320 + MER103 DNA DNA 15 67 -99 740 195 0 16 chr6 144460922 144461045 -37954197 + FLAM_A SINE Alu 1 121 -12 667 167 6 101 chr6 144461045 144461163 -37954079 + MER103 DNA DNA 67 166 0 190 28 28 56 chr6 144462202 144462238 -37953004 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 26 64 0 0 chr6 144463507 144463554 -37951688 + AT_rich Low_complexity Low_complexity 1 47 0 2217 99 6 16 chr6 144463558 144463871 -37951371 + AluY SINE Alu 1 310 -1 772 287 8 55 chr6 144465021 144465123 -37950119 - MIR SINE MIR -8 254 149 2516 59 3 7 chr6 144465123 144465429 -37949813 - AluSp SINE Alu -8 305 1 772 287 8 55 chr6 144465429 144465580 -37949662 - MIR SINE MIR -113 149 13 206 274 0 0 chr6 144465692 144465743 -37949499 - L2 LINE L2 0 3313 3263 285 75 0 0 chr6 144466144 144466184 -37949058 + (TGG)n Simple_repeat Simple_repeat 1 40 0 1754 159 7 20 chr6 144467068 144467364 -37947878 - AluSx SINE Alu -20 292 1 1644 95 163 12 chr6 144467587 144467839 -37947403 + AluSg1 SINE Alu 1 290 -19 23 0 0 0 chr6 144467991 144468014 -37947228 + AT_rich Low_complexity Low_complexity 1 23 0 1701 162 17 34 chr6 144468549 144468685 -37946557 + AluJo SINE Alu 1 138 -174 2567 53 0 3 chr6 144468685 144469011 -37946231 + AluY SINE Alu 1 325 0 1701 162 17 34 chr6 144469011 144469169 -37946073 + AluJo SINE Alu 138 291 -21 2181 125 0 0 chr6 144469177 144469474 -37945768 + AluSg SINE Alu 1 297 -13 2078 125 28 0 chr6 144470499 144470786 -37944456 - AluSx SINE Alu -15 297 3 2235 108 3 13 chr6 144470824 144471138 -37944104 - AluY SINE Alu 0 311 1 2024 133 7 3 chr6 144471140 144471442 -37943800 - AluJo SINE Alu -9 303 1 283 253 80 6 chr6 144471442 144471604 -37943638 - L1MC5 LINE L1 -179 7782 7609 716 149 89 36 chr6 144471690 144471858 -37943384 + MER3 DNA MER1_type 1 130 -79 548 223 0 9 chr6 144471858 144471983 -37943259 - L1MC4a LINE L1 -1048 6760 6652 2063 153 0 0 chr6 144471995 144472295 -37942947 - AluSx SINE Alu -12 300 1 297 0 0 0 chr6 144474986 144475019 -37940223 + (T)n Simple_repeat Simple_repeat 1 33 0 1583 175 38 10 chr6 144476361 144476653 -37938589 + AluJo SINE Alu 1 300 -12 1589 162 30 30 chr6 144476754 144477051 -37938191 + AluJo SINE Alu 1 297 -15 394 321 9 42 chr6 144478176 144478388 -37936854 + MIR SINE MIR 49 253 -9 1845 135 44 62 chr6 144478951 144479086 -37936156 + MER2 DNA MER2_type 1 137 -208 614 192 0 8 chr6 144479086 144479206 -37936036 - L1PB4 LINE L1 0 6156 6038 1845 135 44 62 chr6 144479206 144479410 -37935832 + MER2 DNA MER2_type 137 334 -11 357 308 69 18 chr6 144479583 144479789 -37935453 + MIR SINE MIR 16 228 -34 1913 148 0 7 chr6 144479859 144480150 -37935092 + AluJb SINE Alu 13 301 -11 26 50 0 0 chr6 144481329 144481369 -37933873 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr6 144481511 144481543 -37933699 + AT_rich Low_complexity Low_complexity 1 32 0 380 206 115 48 chr6 144482311 144482476 -37932766 - LTR33 LTR ERVL -246 275 100 372 192 26 0 chr6 144482842 144482920 -37932322 + MIR SINE MIR 66 145 -63 220 191 0 0 chr6 144483523 144483565 -37931677 - MIR3 SINE MIR -9 199 158 404 289 10 86 chr6 144483604 144483634 -37931608 + MIR SINE MIR 20 51 -211 882 147 0 22 chr6 144483634 144483770 -37931472 - FLAM_C SINE Alu 0 133 1 404 289 10 86 chr6 144483770 144483936 -37931306 + MIR SINE MIR 51 201 -61 699 122 0 0 chr6 144484419 144484517 -37930725 + FLAM_A SINE Alu 32 129 -13 25 0 0 0 chr6 144484632 144484657 -37930585 + AT_rich Low_complexity Low_complexity 1 25 0 2096 134 0 13 chr6 144484673 144484980 -37930262 + AluSx SINE Alu 1 303 -9 477 271 7 21 chr6 144485041 144485185 -37930057 - L2 LINE L2 -1 3312 3171 1316 288 163 33 chr6 144485350 144485836 -37929406 + L2 LINE L2 1169 1591 -1723 1476 146 8 46 chr6 144485836 144486097 -37929145 - AluJb SINE Alu 0 312 62 1316 288 163 33 chr6 144486097 144486847 -37928395 + L2 LINE L2 1591 2565 -749 335 277 78 21 chr6 144487625 144487766 -37927476 - MER5A DNA MER1_type -26 163 15 351 0 0 0 chr6 144488136 144488175 -37927067 + (CA)n Simple_repeat Simple_repeat 2 40 0 232 152 65 0 chr6 144488920 144488966 -37926276 - L2 LINE L2 0 3272 3224 549 126 0 23 chr6 144489317 144489404 -37925838 - Alu SINE Alu -4 307 223 180 385 0 0 chr6 144489544 144489596 -37925646 + L2 LINE L2 3205 3256 -16 216 300 100 15 chr6 144489635 144489765 -37925477 + MIR3 SINE MIR 57 197 -11 2343 125 26 38 chr6 144489794 144490350 -37924892 + MER51A LTR ERV1 1 634 0 1158 202 9 14 chr6 144490694 144490917 -37924325 + MER58A DNA MER1_type 1 222 -2 2342 94 13 0 chr6 144491016 144491325 -37923917 - AluSp SINE Alu 0 313 1 259 188 16 31 chr6 144491408 144491472 -37923770 + MER116 DNA Mariner 18 80 0 656 232 11 44 chr6 144491538 144491719 -37923523 + MER5B DNA MER1_type 1 175 -3 1024 183 11 0 chr6 144491830 144492016 -37923226 - MER5A DNA MER1_type -1 188 1 202 302 0 0 chr6 144492037 144492090 -37923152 + L2 LINE L2 3218 3270 -2 357 208 52 0 chr6 144492124 144492201 -37923041 - L2 LINE L2 -49 3264 3184 2363 97 3 0 chr6 144493083 144493381 -37921861 - AluSx SINE Alu -13 299 1 183 129 0 0 chr6 144494296 144494327 -37920915 + (A)n Simple_repeat Simple_repeat 1 31 0 2066 135 7 3 chr6 144494769 144495065 -37920177 + AluSx SINE Alu 1 297 -15 387 41 0 0 chr6 144495220 144495269 -37919973 + (TG)n Simple_repeat Simple_repeat 2 50 0 1880 140 0 0 chr6 144495269 144495541 -37919701 - AluJb SINE Alu -24 288 17 2287 102 3 0 chr6 144495637 144495931 -37919311 + AluSq SINE Alu 1 295 -18 208 135 27 0 chr6 144496079 144496116 -37919126 + MIR SINE MIR 93 130 -78 254 166 10 0 chr6 144496704 144496767 -37918475 - MLT1H LTR MaLR -23 526 484 525 264 39 17 chr6 144496842 144497068 -37918174 - MLT1H LTR MaLR -280 269 3 946 180 0 0 chr6 144497686 144497860 -37917382 - FRAM SINE Alu 0 173 1 225 154 0 0 chr6 144498042 144498081 -37917161 + (CACG)n Simple_repeat Simple_repeat 2 40 0 1690 224 92 46 chr6 144498457 144499043 -37916199 + MLT1E2 LTR MaLR 1 613 -13 616 148 13 20 chr6 144499269 144499418 -37915824 + CT-rich Low_complexity Low_complexity 4 151 0 1903 180 0 0 chr6 144499784 144500084 -37915158 - AluJo SINE Alu -11 301 2 976 184 0 12 chr6 144500184 144500352 -37914890 + FRAM SINE Alu 1 166 0 879 150 0 0 chr6 144500677 144500804 -37914438 + FLAM_C SINE Alu 1 127 -16 2386 90 0 0 chr6 144500895 144501195 -37914047 - AluSq SINE Alu -13 300 1 461 240 94 111 chr6 144501869 144501932 -37913310 - LTR16A1 LTR ERVL -3 454 391 539 86 0 12 chr6 144501932 144502013 -37913229 - MADE1 DNA Mariner 0 80 1 461 240 94 111 chr6 144502013 144502311 -37912931 - LTR16A1 LTR ERVL -66 391 133 26 30 0 0 chr6 144504142 144504175 -37911067 + AT_rich Low_complexity Low_complexity 1 33 0 2055 128 35 0 chr6 144504279 144504568 -37910674 + AluSg SINE Alu 1 299 -11 2132 117 16 3 chr6 144504574 144504881 -37910361 + AluSx SINE Alu 1 311 -1 654 79 0 0 chr6 144504884 144504973 -37910269 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 367 243 111 83 chr6 144505316 144505649 -37909593 + L1ME4a LINE L1 5484 5825 -296 1562 193 0 31 chr6 144505649 144505939 -37909303 + AluJo SINE Alu 1 281 -31 367 243 111 83 chr6 144505939 144505952 -37909290 + L1ME4a LINE L1 5825 5836 -285 213 39 0 0 chr6 144505954 144505980 -37909262 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 1983 157 3 0 chr6 144506375 144506675 -37908567 + AluSx SINE Alu 1 301 -11 1694 185 17 7 chr6 144507836 144508134 -37907108 + AluJo SINE Alu 1 301 -11 1520 195 54 43 chr6 144508291 144508733 -37906509 + MER39 LTR ERV1 67 707 0 2112 104 42 0 chr6 144508896 144509184 -37906058 + AluSx SINE Alu 1 300 -12 294 133 17 17 chr6 144509261 144509321 -37905921 + MER39 LTR ERV1 597 656 -51 4245 76 11 0 chr6 144509324 144509863 -37905379 - MER41A LTR ERV1 -9 545 1 256 159 23 0 chr6 144510032 144510076 -37905166 + Tigger7 DNA MER2_type 1 45 -294 1597 113 4 23 chr6 144510080 144510323 -37904919 + Tigger7 DNA MER2_type 2237 2476 -11 5576 70 43 26 chr6 144510323 144511090 -37904152 + LTR17 LTR ERV1 1 780 0 1597 113 4 23 chr6 144511090 144511102 -37904140 + Tigger7 DNA MER2_type 2476 2487 0 317 295 0 36 chr6 144511562 144511609 -37903633 + MIR SINE MIR 114 161 -101 2284 92 7 3 chr6 144511609 144511925 -37903317 + AluSp SINE Alu 1 317 0 317 295 0 36 chr6 144511925 144512015 -37903227 + MIR SINE MIR 161 247 -15 848 95 0 16 chr6 144512824 144512950 -37902292 - LTR7 LTR ERV1 0 450 327 231 114 0 0 chr6 144513326 144513361 -37901881 + (TG)n Simple_repeat Simple_repeat 1 35 0 182 250 0 0 chr6 144515243 144515283 -37899959 + MER5B DNA MER1_type 1 40 -138 182 143 0 0 chr6 144516270 144516298 -37898944 - MER5B DNA MER1_type -122 56 29 3725 154 8 29 chr6 144516354 144517003 -37898239 - MER41B LTR ERV1 0 635 1 192 336 133 18 chr6 144517192 144517305 -37897937 + L2 LINE L2 3142 3267 -5 2492 106 0 57 chr6 144518115 144518501 -37896741 + THE1B LTR MaLR 1 364 0 2198 116 16 7 chr6 144518976 144519279 -37895963 + AluSx SINE Alu 1 306 -6 31 0 0 0 chr6 144520208 144520239 -37895003 + AT_rich Low_complexity Low_complexity 1 31 0 791 241 103 56 chr6 144520623 144520943 -37894299 - MER58B DNA MER1_type -4 337 3 25 31 0 0 chr6 144521341 144521373 -37893869 + AT_rich Low_complexity Low_complexity 1 32 0 238 287 75 0 chr6 144521570 144521664 -37893578 - MIR SINE MIR -110 152 52 1782 189 0 0 chr6 144521675 144521966 -37893276 + AluSx SINE Alu 9 299 -13 243 0 0 0 chr6 144522065 144522092 -37893150 + (TTG)n Simple_repeat Simple_repeat 1 27 0 756 153 191 60 chr6 144523444 144523523 -37891719 - MER96B DNA MER1_type? -174 243 176 423 0 0 0 chr6 144523523 144523570 -37891672 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1578 172 0 54 chr6 144523571 144523867 -37891375 - AluJb SINE Alu -32 280 1 756 153 191 60 chr6 144523867 144523910 -37891332 - MER96B DNA MER1_type? -241 176 140 2469 50 0 20 chr6 144523910 144524210 -37891032 + AluY SINE Alu 1 294 -17 756 153 191 60 chr6 144524210 144524299 -37890943 - MER96B DNA MER1_type? -277 140 1 1241 170 76 125 chr6 144524417 144524527 -37890715 + MLT2D LTR ERVL 20 134 -386 1703 171 7 0 chr6 144524527 144524808 -37890434 - AluJo SINE Alu -23 289 7 1241 170 76 125 chr6 144524808 144525167 -37890075 + MLT2D LTR ERVL 134 520 0 335 323 47 30 chr6 144525497 144525732 -37889510 - L2 LINE L2 0 3313 3075 1628 213 74 3 chr6 144525931 144526269 -37888973 - MLT1A1 LTR MaLR -2 363 2 249 312 26 0 chr6 144526430 144526507 -37888735 + L2 LINE L2 3193 3271 -1 858 182 5 79 chr6 144527090 144527293 -37887949 + MER53 DNA DNA 2 189 0 2228 13 0 0 chr6 144527759 144527996 -37887246 + AluYa5 SINE Alu 1 237 -74 180 0 0 0 chr6 144528001 144528021 -37887221 + (A)n Simple_repeat Simple_repeat 1 20 0 222 289 41 82 chr6 144528582 144528630 -37886612 + L2 LINE L2 3192 3236 -77 2129 131 7 101 chr6 144528630 144528947 -37886295 - MLT1B LTR MaLR -2 388 120 1771 167 48 3 chr6 144528947 144529241 -37886001 - AluJo SINE Alu -5 307 1 2129 131 7 101 chr6 144529241 144529351 -37885891 - MLT1B LTR MaLR -270 120 1 222 289 41 82 chr6 144529351 144529399 -37885843 + L2 LINE L2 3236 3284 -29 1589 165 3 46 chr6 144531158 144531461 -37883781 - AluJb SINE Alu -22 290 1 2083 93 7 65 chr6 144532999 144533309 -37881933 + AluSx SINE Alu 3 294 -18 263 151 19 38 chr6 144534498 144534551 -37880691 - L2 LINE L2 -18 3295 3244 1815 143 48 17 chr6 144534866 144535160 -37880082 - AluJb SINE Alu -9 303 1 1296 166 13 17 chr6 144535310 144535545 -37879697 - AluJo SINE Alu 0 312 79 555 318 35 31 chr6 144535667 144535922 -37879320 + MIR SINE MIR 7 262 0 249 57 0 0 chr6 144536114 144536149 -37879093 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 2181 118 0 0 chr6 144536152 144536440 -37878802 - AluSx SINE Alu -24 288 1 2212 104 17 0 chr6 144536829 144537128 -37878114 - AluSg SINE Alu -6 304 1 319 353 90 37 chr6 144538140 144538440 -37876802 - L2 LINE L2 -31 3241 2926 301 119 0 0 chr6 144538582 144538624 -37876618 - 5S rRNA rRNA -79 42 1 5240 127 29 52 chr6 144539094 144539677 -37875565 + L1PB3 LINE L1 4872 5467 -687 323 53 0 0 chr6 144539677 144539715 -37875527 - U2 snRNA snRNA -150 38 1 5240 127 29 52 chr6 144539715 144540030 -37875212 + L1PB3 LINE L1 5467 5788 -366 2187 89 12 55 chr6 144540030 144540357 -37874885 + AluSq SINE Alu 1 313 0 5240 127 29 52 chr6 144540357 144540734 -37874508 + L1PB3 LINE L1 5788 6151 -3 21 0 0 0 chr6 144541377 144541398 -37873844 + AT_rich Low_complexity Low_complexity 1 21 0 1321 72 0 11 chr6 144541494 144541674 -37873568 + L1PA8 LINE L1 5995 6172 0 2509 60 0 16 chr6 144541816 144542130 -37873112 - AluSg SINE Alu -1 309 1 331 260 55 24 chr6 144545425 144545552 -37869690 + MIR SINE MIR 79 209 -53 21 0 0 0 chr6 144546759 144546780 -37868462 + AT_rich Low_complexity Low_complexity 1 21 0 31 68 0 0 chr6 144547344 144547403 -37867839 + AT_rich Low_complexity Low_complexity 1 59 0 1912 122 35 11 chr6 144547643 144547930 -37867312 - AluSx SINE Alu -16 296 3 205 286 18 0 chr6 144549859 144549915 -37865327 + GA-rich Low_complexity Low_complexity 1 57 0 2240 110 7 0 chr6 144550575 144550885 -37864357 + AluSx SINE Alu 1 312 0 185 294 0 44 chr6 144550907 144550975 -37864267 - L2 LINE L2 -3 3269 3205 314 248 80 18 chr6 144551216 144551329 -37863913 - L1ME4a LINE L1 -18 6103 5984 * 324 336 79 7 chr6 144551325 144551465 -37863777 - L1MC4a LINE L1 -1896 5912 5763 603 264 42 72 chr6 144551468 144551590 -37863652 - L1MC4a LINE L1 -400 5721 5597 183 42 0 0 chr6 144551590 144551614 -37863628 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 603 264 42 72 chr6 144551614 144551969 -37863273 - L1MC4a LINE L1 -524 5597 5255 2059 129 13 0 chr6 144551974 144552277 -37862965 + AluSx SINE Alu 1 307 -5 497 332 109 22 chr6 144552774 144553277 -37861965 + L2 LINE L2 1615 2161 -1153 318 26 0 0 chr6 144553664 144553703 -37861539 + (CA)n Simple_repeat Simple_repeat 2 40 0 1450 236 29 29 chr6 144554041 144554426 -37860816 + MLT1B LTR MaLR 3 387 -3 447 230 53 40 chr6 144554694 144554846 -37860396 - Charlie8 DNA MER1_type -2146 271 118 351 44 0 0 chr6 144554870 144554915 -37860327 + (CA)n Simple_repeat Simple_repeat 2 46 0 215 190 177 13 chr6 144555096 144555175 -37860067 + L2 LINE L2 2453 2544 -770 458 256 8 31 chr6 144555180 144555309 -37859933 + L1ME LINE L1 464 589 -6236 328 282 0 0 chr6 144555307 144555392 -37859850 + L1ME LINE L1 820 904 -5921 * 829 165 51 0 chr6 144555406 144555582 -37859660 + L1ME LINE L1 1116 1300 -5242 * 3539 208 84 64 chr6 144555580 144556794 -37858448 + L1ME LINE L1 4060 5297 -1347 2116 110 0 3 chr6 144556803 144557127 -37858115 + AluSx SINE Alu 1 323 0 813 139 0 0 chr6 144557155 144557292 -37857950 + AluSg/x SINE Alu 169 305 0 1788 205 45 38 chr6 144557320 144558191 -37857051 + L1ME LINE L1 5300 6164 -500 287 79 0 0 chr6 144558191 144558229 -37857013 - L1M1 LINE L1 -7372 193 156 322 197 0 30 chr6 144558246 144558312 -37856930 + L1ME LINE L1 6163 6226 -438 * 499 205 18 18 chr6 144558301 144558413 -37856829 + L1ME1 LINE L1 5673 5784 -380 394 239 22 117 chr6 144558415 144558595 -37856647 + L1ME1 LINE L1 5941 6103 -63 2272 80 0 7 chr6 144558600 144558915 -37856327 - AluSx SINE Alu 0 313 1 1039 293 153 25 chr6 144558967 144559649 -37855593 + L2 LINE L2 2535 3311 -2 280 333 26 43 chr6 144559655 144559772 -37855470 + L2 LINE L2 3133 3247 -25 208 143 0 0 chr6 144561088 144561123 -37854119 + (A)n Simple_repeat Simple_repeat 1 35 0 180 265 44 44 chr6 144561913 144561981 -37853261 + MIR3 SINE MIR 134 201 -7 2383 104 0 0 chr6 144562803 144563111 -37852131 + AluSx SINE Alu 1 308 -4 1063 164 0 11 chr6 144564747 144564924 -37850318 - FRAM SINE Alu -9 167 1 243 240 40 60 chr6 144566249 144566349 -37848893 + MIR SINE MIR 54 151 -57 218 235 0 20 chr6 144566366 144566417 -37848825 - MIR3 SINE MIR -47 161 112 1601 156 13 66 chr6 144566812 144567113 -37848129 - AluJo SINE Alu -27 285 1 2190 101 0 3 chr6 144567251 144567537 -37847705 + AluSg SINE Alu 2 286 -24 196 321 149 15 chr6 144568150 144568284 -37846958 + L2 LINE L2 2231 2382 -932 427 350 131 14 chr6 144568341 144568692 -37846550 + L2 LINE L2 2584 2975 -339 425 277 15 51 chr6 144568813 144568950 -37846292 + L2 LINE L2 3182 3313 0 37 52 0 0 chr6 144570482 144570540 -37844702 + AT_rich Low_complexity Low_complexity 1 58 0 1023 167 56 42 chr6 144570541 144570757 -37844485 + MER20 DNA MER1_type 1 219 0 1927 164 0 0 chr6 144571003 144571296 -37843946 - AluJb SINE Alu -19 293 1 2399 64 7 3 chr6 144572244 144572539 -37842703 - AluSp SINE Alu -14 299 4 28 29 0 0 chr6 144572691 144572726 -37842516 + AT_rich Low_complexity Low_complexity 1 35 0 2028 148 0 0 chr6 144573780 144574083 -37841159 + AluSx SINE Alu 1 303 -9 2056 132 10 3 chr6 144574991 144575294 -37839948 + AluSx SINE Alu 1 305 -7 204 67 0 0 chr6 144575294 144575324 -37839918 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 365 294 129 72 chr6 144575427 144575621 -37839621 + MIR3 SINE MIR 1 205 -3 1371 212 60 14 chr6 144576884 144577233 -37838009 + MLT1A1 LTR MaLR 1 365 0 556 218 65 59 chr6 144577653 144577823 -37837419 + MER5B DNA MER1_type 1 171 -7 227 356 109 45 chr6 144577843 144578657 -37836585 + L2 LINE L2 619 1484 -1830 922 201 37 11 chr6 144578694 144578883 -37836359 - MER20 DNA MER1_type -21 198 5 275 323 107 73 chr6 144579287 144580113 -37835129 + L2 LINE L2 1992 2845 -469 317 330 37 90 chr6 144580155 144580509 -37834733 + L2 LINE L2 2936 3270 -2 330 251 80 49 chr6 144580990 144581153 -37834089 + MIR SINE MIR 9 176 -86 375 380 43 32 chr6 144581655 144581934 -37833308 - L2 LINE L2 -5 3267 2986 1886 126 39 3 chr6 144581963 144582248 -37832994 + AluSx SINE Alu 1 295 -17 742 205 0 0 chr6 144583224 144583351 -37831891 - FLAM_C SINE Alu -16 127 1 1167 171 0 0 chr6 144583870 144584051 -37831191 + AluJb SINE Alu 130 310 -2 24 0 0 0 chr6 144584467 144584491 -37830751 + AT_rich Low_complexity Low_complexity 1 24 0 2218 94 7 3 chr6 144584564 144584863 -37830379 - AluSq SINE Alu -13 300 1 289 245 233 38 chr6 144584880 144585039 -37830203 - MIR3 SINE MIR 0 208 19 1694 172 3 29 chr6 144586798 144587112 -37828130 + AluJo SINE Alu 1 306 -6 291 104 0 0 chr6 144587291 144587339 -37827903 + (TA)n Simple_repeat Simple_repeat 1 48 0 2374 80 0 0 chr6 144587788 144588087 -37827155 - AluSx SINE Alu -13 299 1 577 329 21 29 chr6 144588212 144588455 -37826787 - MIR SINE MIR -5 257 15 807 237 101 64 chr6 144588902 144589204 -37826038 + MLT1B LTR MaLR 1 321 -69 2044 135 21 54 chr6 144589204 144589326 -37825916 - L1PB3 LINE L1 -5 6149 6024 2224 99 3 0 chr6 144589326 144589620 -37825622 - AluSx SINE Alu -17 295 1 2044 135 21 54 chr6 144589620 144589883 -37825359 - L1PB3 LINE L1 -130 6024 5777 807 237 101 64 chr6 144589883 144589956 -37825286 + MLT1B LTR MaLR 321 390 0 2441 186 94 27 chr6 144590260 144591025 -37824217 + MER21A LTR ERV1 1 931 0 14905 122 19 16 chr6 144591026 144593394 -37821848 + Tigger1 DNA MER2_type 43 2418 0 27 29 0 0 chr6 144593695 144593729 -37821513 + AT_rich Low_complexity Low_complexity 1 34 0 566 160 19 28 chr6 144594619 144594725 -37820517 + MLT1C LTR MaLR 361 465 -2 591 279 101 34 chr6 144594730 144594831 -37820411 - L1MEc LINE L1 -5607 789 696 2329 88 3 0 chr6 144594831 144595127 -37820115 - AluSg SINE Alu -13 297 1 591 279 101 34 chr6 144595127 144595244 -37819998 - L1MEc LINE L1 -5700 696 588 2158 158 81 50 chr6 144595244 144595739 -37819503 + LTR54 LTR ERV1 1 510 0 591 279 101 34 chr6 144595739 144595877 -37819365 - L1MEc LINE L1 -5808 588 408 21 57 0 0 chr6 144595924 144595959 -37819283 + AT_rich Low_complexity Low_complexity 1 35 0 284 293 0 0 chr6 144596539 144596614 -37818628 + MIR3 SINE MIR 120 194 -14 2081 152 64 0 chr6 144596951 144597294 -37817948 + MLT1A1 LTR MaLR 1 365 0 963 194 24 0 chr6 144597567 144597737 -37817505 + MER5A DNA MER1_type 5 178 -11 25 0 0 0 chr6 144598371 144598396 -37816846 + AT_rich Low_complexity Low_complexity 1 25 0 2169 87 42 3 chr6 144598608 144598897 -37816345 + AluSx SINE Alu 6 305 -7 938 169 44 0 chr6 144598914 144599074 -37816168 + MER7C DNA MER2_type 1 167 -435 2002 131 0 3 chr6 144599075 144599357 -37815885 + AluJb SINE Alu 1 281 -31 186 172 0 0 chr6 144599591 144599620 -37815622 - L2 LINE L2 -18 3254 3226 222 255 20 0 chr6 144599636 144599687 -37815555 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 249 228 0 18 chr6 144600084 144600141 -37815101 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 2035 139 0 19 chr6 144600237 144600547 -37814695 + AluJb SINE Alu 1 304 -8 2412 80 3 10 chr6 144600776 144601090 -37814152 + AluSq SINE Alu 1 312 -1 1324 232 11 46 chr6 144601317 144601683 -37813559 + L1MB7 LINE L1 46 398 -6144 1168 122 0 28 chr6 144601683 144601863 -37813379 - AluSg/x SINE Alu -9 301 127 354 266 62 9 chr6 144601867 144601980 -37813262 + L1MB7 LINE L1 406 524 -6018 5380 234 100 57 chr6 144601982 144602850 -37812392 + L1MB7 LINE L1 1004 1833 -4811 2148 112 3 13 chr6 144602850 144603163 -37812079 + AluSg SINE Alu 1 310 0 5380 234 100 57 chr6 144603163 144603398 -37811844 + L1MB7 LINE L1 1833 2056 -4588 447 68 0 0 chr6 144603398 144603457 -37811785 + (TA)n Simple_repeat Simple_repeat 1 59 0 5380 234 100 57 chr6 144603457 144606754 -37808488 + L1MB7 LINE L1 2056 5739 -905 1142 172 56 2 chr6 144606754 144607039 -37808203 + MER2 DNA MER2_type 1 345 0 331 200 40 0 chr6 144607039 144607114 -37808128 + L1MB7 LINE L1 5738 5815 -829 50 42 0 0 chr6 144607119 144607190 -37808052 + AT_rich Low_complexity Low_complexity 1 71 0 219 209 0 0 chr6 144607216 144607259 -37807983 + MIR SINE MIR 220 262 0 452 189 0 54 chr6 144607386 144607534 -37807708 + CT-rich Low_complexity Low_complexity 2 141 0 493 80 80 11 chr6 144607536 144607624 -37807618 - MER41B LTR ERV1 -62 573 480 270 0 0 0 chr6 144607687 144607717 -37807525 + (CA)n Simple_repeat Simple_repeat 1 30 0 4048 165 64 11 chr6 144607773 144608596 -37806646 + L1MB7 LINE L1 5808 6674 -8 2343 85 0 19 chr6 144608943 144609260 -37805982 - AluY SINE Alu 0 311 1 337 227 156 50 chr6 144610284 144610425 -37804817 + MIR SINE MIR 107 262 0 469 316 29 29 chr6 144611375 144611584 -37803658 + L3 LINE CR1 636 844 -733 192 307 150 24 chr6 144611602 144611729 -37803513 - MIR SINE MIR -20 242 100 1202 153 42 32 chr6 144611824 144612040 -37803202 - AluJo SINE Alu -91 221 4 181 329 12 24 chr6 144612536 144612618 -37802624 - MIR3 SINE MIR -12 196 116 399 328 148 22 chr6 144613263 144613737 -37801505 - L2 LINE L2 -71 3242 2678 362 231 0 0 chr6 144613755 144613820 -37801422 - MER94 DNA DNA 0 134 70 249 128 0 0 chr6 144613880 144613927 -37801315 + (A)n Simple_repeat Simple_repeat 1 47 0 685 211 117 12 chr6 144614153 144614324 -37800918 - MIR SINE MIR -62 200 12 196 326 93 0 chr6 144614352 144614438 -37800804 - L2 LINE L2 -361 2911 2818 254 95 24 0 chr6 144615462 144615473 -37799769 + (CA)n Simple_repeat Simple_repeat 1 54 0 254 95 24 0 chr6 144615473 144615515 -37799727 + (CA)n Simple_repeat Simple_repeat 2 44 0 291 314 69 36 chr6 144617690 144617967 -37797275 + HAL1b LINE L1 379 664 -684 2150 104 0 0 chr6 144618379 144618688 -37796554 + AluSg SINE Alu 1 309 0 25 70 0 35 chr6 144619373 144619459 -37795783 + AT_rich Low_complexity Low_complexity 1 83 0 2220 101 3 3 chr6 144619701 144619997 -37795245 - AluSc SINE Alu -13 296 1 1308 179 26 0 chr6 144620019 144620248 -37794994 + MER46A DNA MER2_type 1 235 -1 2134 164 37 12 chr6 144622983 144623385 -37791857 + MLT2D LTR ERVL 1 412 -2 878 253 88 19 chr6 144623660 144624079 -37791163 - L1MCc LINE L1 -4084 3038 2591 254 273 159 7 chr6 144624146 144624406 -37790836 - L1MCc LINE L1 -4550 2391 1932 441 0 0 0 chr6 144624406 144624455 -37790787 + (CA)n Simple_repeat Simple_repeat 1 49 0 10359 172 58 41 chr6 144624607 144625103 -37790139 - L1PB1 LINE L1 -1 6866 6380 547 86 0 12 chr6 144625103 144625184 -37790058 - MADE1 DNA Mariner 0 80 1 10359 172 58 41 chr6 144625184 144625779 -37789463 - L1PB1 LINE L1 -487 6380 5796 6677 54 6 75 chr6 144625779 144626829 -37788413 - SVA Other Other 0 1386 433 10359 172 58 41 chr6 144626829 144626846 -37788396 - L1PB1 LINE L1 -1071 5796 5781 5928 79 26 16 chr6 144626846 144627704 -37787538 - SVA Other Other -520 866 1 10359 172 58 41 chr6 144627704 144629861 -37785381 - L1PB1 LINE L1 -1086 5781 3542 14566 101 108 12 chr6 144629864 144632198 -37783044 - L1PB1 LINE L1 -4301 2562 3 362 295 62 71 chr6 144632255 144633028 -37782214 - L1MCc LINE L1 -4896 1943 1142 356 316 47 24 chr6 144634087 144634340 -37780902 - HAL1 LINE L1 -962 1545 1287 1259 171 49 77 chr6 144635151 144635438 -37779804 + AluJo SINE Alu 2 280 -32 228 246 18 109 chr6 144635479 144635589 -37779653 - MIR SINE MIR -114 148 49 213 298 48 67 chr6 144635643 144635747 -37779495 + L2 LINE L2 3171 3272 0 1849 177 42 3 chr6 144635908 144636242 -37779000 + MER7A DNA MER2_type 1 345 -1 312 27 0 0 chr6 144636833 144636870 -37778372 + (TA)n Simple_repeat Simple_repeat 2 38 0 2514 60 3 0 chr6 144636870 144637172 -37778070 - AluY SINE Alu -8 303 1 415 302 86 51 chr6 144637233 144637537 -37777705 + L1M4 LINE L1 4177 4469 -1677 1867 161 70 3 chr6 144637537 144637879 -37777363 + MER47A DNA MER2_type 1 365 -1 415 302 86 51 chr6 144637879 144638223 -37777019 + L1M4 LINE L1 4469 4848 -1298 2139 247 68 87 chr6 144638450 144639362 -37775880 + L1MC4 LINE L1 6563 7544 -498 2501 77 0 0 chr6 144639362 144639672 -37775570 + AluSg SINE Alu 1 310 0 2139 247 68 87 chr6 144639672 144639973 -37775269 + L1MC4 LINE L1 7544 7849 -193 1531 170 33 11 chr6 144640223 144640535 -37774707 - AluJo SINE Alu 0 318 1 23 0 0 0 chr6 144640670 144640693 -37774549 + AT_rich Low_complexity Low_complexity 1 23 0 330 259 0 60 chr6 144640870 144640970 -37774272 + MIR SINE MIR 24 118 -90 216 312 87 14 chr6 144641683 144641821 -37773421 + L2 LINE L2 2138 2285 -1029 * 238 222 74 19 chr6 144641812 144641866 -37773376 + L2 LINE L2 3198 3254 -18 418 292 58 121 chr6 144641918 144642602 -37772640 + L2 LINE L2 2316 2954 -318 605 169 5 20 chr6 144642615 144642810 -37772432 + CT-rich Low_complexity Low_complexity 1 192 0 1763 168 53 0 chr6 144642958 144643279 -37771963 - MER2 DNA MER2_type -4 340 3 272 285 179 0 chr6 144644516 144644667 -37770575 + L2 LINE L2 3131 3308 -5 23 33 0 0 chr6 144644686 144644716 -37770526 + AT_rich Low_complexity Low_complexity 1 30 0 288 0 0 0 chr6 144645655 144645687 -37769555 + (A)n Simple_repeat Simple_repeat 1 32 0 294 29 0 0 chr6 144645687 144645722 -37769520 + (TA)n Simple_repeat Simple_repeat 1 35 0 25 0 0 0 chr6 144645722 144645747 -37769495 + AT_rich Low_complexity Low_complexity 1 25 0 1421 148 16 44 chr6 144645987 144646237 -37769005 - AluJb SINE Alu -9 303 61 256 219 0 0 chr6 144646310 144646351 -37768891 - AluJ/monomer SINE Alu -261 41 1 1909 140 0 0 chr6 144647570 144647849 -37767393 + AluSx SINE Alu 4 282 -30 313 127 0 0 chr6 144647867 144647922 -37767320 - Charlie5 DNA MER1_type -2499 113 59 1166 263 123 0 chr6 144647949 144648307 -37766935 - L2 LINE L2 -1037 2277 1876 194 0 39 0 chr6 144648562 144648588 -37766654 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 2505 62 0 0 chr6 144649066 144649370 -37765872 - AluY SINE Alu -7 304 1 2137 114 16 3 chr6 144649380 144649687 -37765555 - AluSq SINE Alu -2 311 1 1207 168 19 14 chr6 144649724 144649938 -37765304 - AluJb SINE Alu -92 220 6 200 265 175 85 chr6 144650567 144650767 -37764475 - MIR SINE MIR -41 221 4 2102 129 0 0 chr6 144651492 144651786 -37763456 + AluSq SINE Alu 3 296 -17 2368 73 7 3 chr6 144651789 144652090 -37763152 + AluY SINE Alu 1 302 -9 1223 112 93 28 chr6 144652679 144652894 -37762348 - MER30 DNA MER1_type 0 230 2 202 338 150 12 chr6 144653372 144653532 -37761710 + MIR3 SINE MIR 26 207 -1 1421 127 86 52 chr6 144654019 144654286 -37760956 - MER1B DNA MER1_type 0 339 64 1121 84 13 0 chr6 144654475 144654630 -37760612 - MER31A LTR ERV1 0 485 329 238 244 35 139 chr6 144654641 144654813 -37760429 - L2 LINE L2 -831 2483 2330 253 360 129 0 chr6 144654883 144655030 -37760212 + L2 LINE L2 3107 3272 0 275 316 141 34 chr6 144655477 144655654 -37759588 - MIR3 SINE MIR -5 203 8 189 346 128 32 chr6 144656532 144656688 -37758554 - MIR SINE MIR -51 211 41 299 303 0 0 chr6 144659547 144659636 -37755606 + (CATA)n Simple_repeat Simple_repeat 2 90 0 198 0 0 0 chr6 144660819 144660841 -37754401 + (T)n Simple_repeat Simple_repeat 1 22 0 1689 179 10 3 chr6 144661662 144661953 -37753289 + AluJb SINE Alu 1 293 -19 194 292 78 52 chr6 144662435 144662589 -37752653 + L2 LINE L2 2337 2494 -820 1206 139 43 13 chr6 144662659 144662889 -37752353 - L1PA14 LINE L1 -2 6159 5923 33 25 0 0 chr6 144662908 144662948 -37752294 + AT_rich Low_complexity Low_complexity 1 40 0 2678 109 21 12 chr6 144663383 144663806 -37751436 + MER4C LTR ERV1 39 465 0 461 290 304 25 chr6 144663810 144664169 -37751073 + L2 LINE L2 2852 3310 -3 2442 182 45 13 chr6 144664316 144665258 -37749984 + L1MB7 LINE L1 4855 5824 -360 471 127 0 14 chr6 144665258 144665329 -37749913 + Tigger2 DNA MER2_type 1 70 -2648 * 2421 143 52 5 chr6 144665311 144665732 -37749510 + Tigger2 DNA MER2_type 2267 2707 -11 1380 198 27 87 chr6 144665732 144666101 -37749141 + L1MB7 LINE L1 5830 6176 -8 21 0 0 0 chr6 144666780 144666801 -37748441 + AT_rich Low_complexity Low_complexity 1 21 0 434 253 6 80 chr6 144667125 144667287 -37747955 + MIR SINE MIR 67 216 -46 2381 77 0 10 chr6 144668338 144668650 -37746592 + AluSc SINE Alu 1 309 0 768 250 42 47 chr6 144669128 144669364 -37745878 + MIR SINE MIR 28 262 0 22 0 0 0 chr6 144670026 144670048 -37745194 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr6 144670396 144670441 -37744801 + AT_rich Low_complexity Low_complexity 1 45 0 2376 50 0 72 chr6 144670492 144670810 -37744432 + AluY SINE Alu 2 296 -15 24 32 0 0 chr6 144671206 144671237 -37744005 + AT_rich Low_complexity Low_complexity 1 31 0 193 323 16 0 chr6 144671486 144671548 -37743694 - L2 LINE L2 -56 3216 3154 470 285 64 68 chr6 144672730 144672850 -37742392 - MIR SINE MIR 0 262 143 1608 148 13 52 chr6 144672850 144673160 -37742082 + AluJo SINE Alu 13 310 -2 470 285 64 68 chr6 144673160 144673288 -37741954 - MIR SINE MIR -119 143 15 857 193 0 0 chr6 144673621 144673771 -37741471 - AluSg/x SINE Alu -30 282 133 1153 199 4 5 chr6 144674865 144675162 -37740080 - MER2 DNA MER2_type 0 345 2 203 59 0 29 chr6 144675301 144675335 -37739907 + (ATG)n Simple_repeat Simple_repeat 3 35 0 236 226 0 19 chr6 144675562 144675615 -37739627 + Charlie4 DNA MER1_type 1 52 -1909 1248 163 78 39 chr6 144675809 144676067 -37739175 + AluJb SINE Alu 2 269 -43 401 221 35 0 chr6 144676155 144676241 -37739001 + L1ME1 LINE L1 38 126 -6270 310 217 14 0 chr6 144676279 144676348 -37738894 - MER96 DNA MER1_type? -1 174 105 3717 215 69 32 chr6 144676369 144677577 -37737665 + L1ME1 LINE L1 4304 5608 -627 5824 31 1 0 chr6 144677577 144678264 -37736978 - L1PA3 LINE L1 -3 6152 5465 3717 215 69 32 chr6 144678264 144678912 -37736330 + L1ME1 LINE L1 5608 6230 -5 328 229 116 68 chr6 144678996 144679154 -37736088 + L1ME LINE L1 5297 5468 -653 235 274 114 35 chr6 144679202 144679403 -37735839 + L1ME LINE L1 5696 5912 -209 196 315 19 0 chr6 144680913 144680967 -37734275 - L2 LINE L2 -18 3254 3200 24 32 0 0 chr6 144681699 144681730 -37733512 + AT_rich Low_complexity Low_complexity 1 31 0 5975 121 51 6 chr6 144682191 144683144 -37732098 - Tigger1 DNA MER2_type 0 2418 1423 * 6549 134 26 2 chr6 144683142 144684165 -37731077 - Tigger1 DNA MER2_type -1370 1048 1 239 286 77 53 chr6 144684195 144684377 -37730865 - MIR SINE MIR -63 145 9 21 0 0 0 chr6 144684651 144684672 -37730570 + AT_rich Low_complexity Low_complexity 1 21 0 1599 153 56 21 chr6 144684995 144685282 -37729960 + AluJb SINE Alu 1 297 -15 444 37 0 0 chr6 144685380 144685434 -37729808 + (TATG)n Simple_repeat Simple_repeat 3 56 0 865 135 0 0 chr6 144685434 144685550 -37729692 - FLAM_C SINE Alu -183 119 1 715 272 61 4 chr6 144685732 144685978 -37729264 + MIR SINE MIR 1 260 -2 21 0 0 0 chr6 144686023 144686044 -37729198 + AT_rich Low_complexity Low_complexity 1 21 0 204 234 0 64 chr6 144686439 144686486 -37728756 + L2 LINE L2 3257 3300 -13 265 306 31 45 chr6 144686924 144687117 -37728125 + MIR SINE MIR 7 262 0 301 302 64 50 chr6 144688328 144688509 -37726733 - MIR SINE MIR -67 141 16 260 384 30 83 chr6 144691608 144691874 -37723368 - L2 LINE L2 -5 3267 3016 659 251 108 26 chr6 144692370 144692565 -37722677 - MER20 DNA MER1_type -7 212 2 23 0 0 0 chr6 144692569 144692592 -37722650 + AT_rich Low_complexity Low_complexity 1 23 0 557 312 170 54 chr6 144694504 144694927 -37720315 - L3 LINE CR1 -2 1575 1104 2232 99 0 0 chr6 144695120 144695412 -37719830 - AluY SINE Alu -19 292 1 24 85 0 0 chr6 144696822 144696881 -37718361 + AT_rich Low_complexity Low_complexity 1 59 0 455 339 144 38 chr6 144698520 144699365 -37715877 - L2 LINE L2 -687 2627 1679 2142 121 3 0 chr6 144699365 144699662 -37715580 - AluSx SINE Alu -14 298 1 455 339 144 38 chr6 144699662 144699719 -37715523 - L2 LINE L2 -1635 1679 1629 184 250 150 12 chr6 144700436 144700516 -37714726 + MIR SINE MIR 120 210 -52 27 29 0 0 chr6 144701309 144701343 -37713899 + AT_rich Low_complexity Low_complexity 1 34 0 4002 179 28 4 chr6 144701914 144702630 -37712612 + MER44D DNA MER2_type 1 605 0 5414 220 63 28 chr6 144702639 144703141 -37712101 + L1M4 LINE L1 16 499 -6146 219 69 0 0 chr6 144703141 144703170 -37712072 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5414 220 63 28 chr6 144703170 144704299 -37710943 + L1M4 LINE L1 499 2131 -4514 24 0 0 0 chr6 144704560 144704584 -37710658 + AT_rich Low_complexity Low_complexity 1 24 0 205 230 90 60 chr6 144706190 144706290 -37708952 - MIR SINE MIR -10 252 150 186 366 42 0 chr6 144706760 144706831 -37708411 + L2 LINE L2 3185 3258 -14 926 244 61 4 chr6 144707482 144707711 -37707531 - Charlie1b DNA MER1_type -281 242 1 1067 146 16 106 chr6 144708315 144708535 -37706707 - AluJo SINE Alu -2 310 113 2437 70 0 0 chr6 144708535 144708837 -37706405 + AluY SINE Alu 1 302 -9 1067 146 16 106 chr6 144708837 144708862 -37706380 - AluJo SINE Alu -199 113 87 982 221 104 4 chr6 144708936 144709185 -37706057 + MLT1B LTR MaLR 18 291 -99 1559 229 37 11 chr6 144709186 144709540 -37705702 + MLT1A2 LTR MaLR 1 363 -11 189 267 0 50 chr6 144709570 144709630 -37705612 + L2 LINE L2 3257 3313 0 953 176 68 59 chr6 144710567 144710789 -37704453 + MER58A DNA MER1_type 1 224 0 24 53 0 0 chr6 144711640 144711678 -37703564 + AT_rich Low_complexity Low_complexity 1 38 0 1888 149 3 10 chr6 144711809 144712110 -37703132 - AluSx SINE Alu -13 299 1 666 227 108 17 chr6 144712483 144712659 -37702583 + MER3 DNA MER1_type 2 193 -16 337 326 169 0 chr6 144712668 144712840 -37702402 - L2 LINE L2 -854 2460 2260 275 352 126 20 chr6 144712851 144713192 -37702050 - L2 LINE L2 -1156 2158 1782 1856 160 3 0 chr6 144713766 144714053 -37701189 - AluSx SINE Alu -21 291 4 239 304 14 0 chr6 144714109 144714178 -37701064 - L2 LINE L2 0 3272 3203 228 256 176 16 chr6 144714190 144714315 -37700927 - L2 LINE L2 -1312 2002 1858 768 317 31 63 chr6 144715210 144715629 -37699613 + L2 LINE L2 2597 3002 -311 27 29 0 0 chr6 144715681 144715715 -37699527 + AT_rich Low_complexity Low_complexity 1 34 0 284 287 172 8 chr6 144715725 144715847 -37699395 + L2 LINE L2 3172 3313 0 * 331 238 38 38 chr6 144715845 144715950 -37699292 + L2 LINE L2 3207 3311 -2 449 307 89 49 chr6 144716873 144717365 -37697877 - L1ME4a LINE L1 -12 6109 5598 198 260 0 0 chr6 144717972 144718022 -37697220 + L2 LINE L2 3015 3064 -208 1825 163 0 13 chr6 144719020 144719321 -37695921 + AluJb SINE Alu 2 298 -14 1981 107 36 0 chr6 144719771 144720052 -37695190 + AluSx SINE Alu 1 291 -21 21 57 0 0 chr6 144720868 144720903 -37694339 + AT_rich Low_complexity Low_complexity 1 35 0 1558 248 108 10 chr6 144721715 144722436 -37692806 + L1ME3A LINE L1 2538 3329 -2817 2027 246 81 69 chr6 144722555 144722674 -37692568 + L1ME3A LINE L1 4146 4262 -1908 1715 186 31 0 chr6 144722674 144722964 -37692278 + AluJb SINE Alu 5 303 -9 2027 246 81 69 chr6 144722964 144724781 -37690461 + L1ME3A LINE L1 4262 6098 -72 238 198 0 73 chr6 144725054 144725150 -37690092 + A-rich Low_complexity Low_complexity 5 93 0 2208 115 0 0 chr6 144725379 144725675 -37689567 + AluSx SINE Alu 1 296 -16 1292 167 32 0 chr6 144726502 144726718 -37688524 - AluJb SINE Alu -2 310 88 21 0 0 0 chr6 144726902 144726923 -37688319 + AT_rich Low_complexity Low_complexity 1 21 0 1687 225 57 73 chr6 144727182 144727762 -37687480 + MLT1F1 LTR MaLR 1 567 0 448 275 101 7 chr6 144728308 144728446 -37686796 + MIR SINE MIR 112 262 0 30 59 0 0 chr6 144729697 144729748 -37685494 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr6 144731022 144731058 -37684184 + AT_rich Low_complexity Low_complexity 1 36 0 4796 125 89 13 chr6 144731096 144731182 -37684060 + L1PA10 LINE L1 3106 3184 -2962 1459 133 0 0 chr6 144731182 144731385 -37683857 + AluSx SINE Alu 1 203 -109 4796 125 89 13 chr6 144731385 144732151 -37683091 + L1PA10 LINE L1 3184 4023 -2123 5733 85 66 1 chr6 144732151 144733697 -37681545 + L1PA10 LINE L1 4555 6167 -1 2863 13 0 0 chr6 144734491 144734809 -37680433 + AluYb8 SINE Alu 1 318 0 2613 217 89 54 chr6 144734809 144736610 -37678632 - L1ME1 LINE L1 -12 6223 4352 1832 151 48 48 chr6 144736612 144736964 -37678278 + MER47A DNA MER2_type 1 352 -14 5501 248 70 35 chr6 144736977 144737267 -37677975 - L1ME1 LINE L1 -1877 4338 4060 603 117 68 0 chr6 144737267 144737370 -37677872 - HY1 scRNA scRNA -2 110 1 5501 248 70 35 chr6 144737370 144738081 -37677161 - L1ME1 LINE L1 -2155 4060 3376 1892 221 88 52 chr6 144738081 144738664 -37676578 + MER77 LTR ERV1 2 605 0 5501 248 70 35 chr6 144738664 144739798 -37675444 - L1ME1 LINE L1 -2839 3376 2284 2523 66 0 0 chr6 144739798 144740100 -37675142 - AluY SINE Alu -9 302 1 5501 248 70 35 chr6 144740100 144740239 -37675003 - L1ME1 LINE L1 -3931 2284 2151 1953 125 146 34 chr6 144740239 144740582 -37674660 + MSTA LTR MaLR 1 393 -35 1936 118 0 14 chr6 144740582 144740861 -37674381 - AluSx SINE Alu -37 275 1 1953 125 146 34 chr6 144740861 144740900 -37674342 + MSTA LTR MaLR 393 426 -2 9181 139 15 42 chr6 144740903 144742524 -37672718 + MSTA-int LTR MaLR 3 1580 0 1503 169 180 11 chr6 144742524 144742890 -37672352 + MSTA LTR MaLR 1 428 0 5501 248 70 35 chr6 144742890 144742938 -37672304 - L1ME1 LINE L1 -4065 2150 2105 1814 172 10 3 chr6 144742938 144743241 -37672001 + AluJb SINE Alu 1 305 -7 5501 248 70 35 chr6 144743241 144743287 -37671955 - L1ME1 LINE L1 -4110 2105 1935 2239 163 42 51 chr6 144743296 144743473 -37671769 + MSTC LTR MaLR 4 181 -247 2011 159 9 18 chr6 144743473 144743813 -37671429 + MER1B DNA MER1_type 1 337 0 2239 163 42 51 chr6 144743813 144744064 -37671178 + MSTC LTR MaLR 181 428 0 1084 165 94 0 chr6 144744093 144744305 -37670937 - MER46A DNA MER2_type -1 235 4 698 295 113 59 chr6 144744308 144744987 -37670255 - L1ME1 LINE L1 -4488 1908 1193 334 238 74 49 chr6 144745025 144745147 -37670095 + MER63 DNA MER1_type 2 752 -310 * 335 261 65 0 chr6 144745138 144745230 -37670012 + MER63 DNA MER1_type 964 1061 0 509 239 188 44 chr6 144745230 144745655 -37669587 - L1ME1 LINE L1 -5218 1178 683 2132 116 0 26 chr6 144745655 144745958 -37669284 - AluSg SINE Alu -15 295 1 509 239 188 44 chr6 144745958 144745984 -37669258 - L1ME1 LINE L1 -5713 683 662 397 171 26 0 chr6 144746388 144746464 -37668778 - MLT1G LTR MaLR 0 590 513 2442 112 14 19 chr6 144746692 144747058 -37668184 - THE1B LTR MaLR 0 364 1 188 245 66 66 chr6 144747332 144747438 -37667804 + MIR SINE MIR 157 262 0 273 87 65 0 chr6 144747547 144747593 -37667649 - L2 LINE L2 0 3313 3265 21 0 0 0 chr6 144747803 144747824 -37667418 + AT_rich Low_complexity Low_complexity 1 21 0 2083 141 0 3 chr6 144747830 144748135 -37667107 - AluSq SINE Alu -9 304 1 373 197 0 15 chr6 144748623 144748689 -37666553 + AluS SINE Alu 13 77 -225 504 245 161 0 chr6 144748691 144748834 -37666408 + MIR SINE MIR 60 225 -37 23 0 0 0 chr6 144749512 144749535 -37665707 + AT_rich Low_complexity Low_complexity 1 23 0 1766 184 7 0 chr6 144749541 144749824 -37665418 - AluJb SINE Alu -25 287 3 1511 144 58 0 chr6 144750301 144750579 -37664663 - L1MA4 LINE L1 -5 6295 6002 262 274 75 9 chr6 144750737 144750843 -37664399 - HAL1b LINE L1 -819 529 417 342 330 51 60 chr6 144751211 144751426 -37663816 + MIR SINE MIR 20 232 -30 589 261 130 9 chr6 144751596 144751811 -37663431 + MIR SINE MIR 1 241 -21 281 302 141 41 chr6 144752967 144753209 -37662033 - L3 LINE CR1 -244 1333 1068 271 292 17 33 chr6 144753642 144753762 -37661480 + L2 LINE L2 1986 2103 -1211 340 267 0 0 chr6 144753784 144753859 -37661383 + MIR SINE MIR 67 141 -121 260 340 139 19 chr6 144753951 144754160 -37661082 + L2 LINE L2 2695 2928 -386 25 31 0 0 chr6 144754331 144754363 -37660879 + AT_rich Low_complexity Low_complexity 1 32 0 182 365 47 0 chr6 144754374 144754459 -37660783 + L2 LINE L2 3184 3272 0 672 195 146 54 chr6 144754483 144754688 -37660554 + MER58A DNA MER1_type 1 224 0 22 35 0 0 chr6 144754945 144754974 -37660268 + AT_rich Low_complexity Low_complexity 1 29 0 2174 91 35 0 chr6 144755774 144756059 -37659183 - AluSx SINE Alu -17 295 1 22 0 0 0 chr6 144756426 144756448 -37658794 + AT_rich Low_complexity Low_complexity 1 22 0 1672 158 0 0 chr6 144756522 144756775 -37658467 + AluSq SINE Alu 2 254 -59 342 204 212 9 chr6 144756975 144757088 -37658154 + MIR SINE MIR 123 258 -4 380 305 45 13 chr6 144757232 144757386 -37657856 + MIR SINE MIR 104 262 0 389 354 78 52 chr6 144757959 144758454 -37656788 + L2 LINE L2 2674 3193 -79 237 139 0 0 chr6 144758476 144758519 -37656723 + (GAGAA)n Simple_repeat Simple_repeat 4 46 0 346 240 118 56 chr6 144758523 144758708 -37656534 + MIR SINE MIR 16 222 -40 30 59 0 0 chr6 144758728 144758779 -37656463 + AT_rich Low_complexity Low_complexity 1 51 0 2090 132 0 3 chr6 144758882 144759178 -37656064 - AluSx SINE Alu -17 295 1 353 344 58 72 chr6 144760370 144760731 -37654511 + L1M2 LINE L1 560 915 -5934 250 291 162 42 chr6 144761542 144761783 -37653459 + L2 LINE L2 2576 2845 -469 220 356 26 26 chr6 144761870 144761985 -37653257 + L2 LINE L2 2903 3017 -255 343 287 11 0 chr6 144762084 144762171 -37653071 + L2 LINE L2 3224 3311 -2 216 268 85 0 chr6 144762166 144762248 -37652994 - MIR SINE MIR 0 262 174 * 324 270 110 0 chr6 144762412 144762512 -37652730 - L2 LINE L2 -213 3059 2949 648 372 19 0 chr6 144762686 144762998 -37652244 - L2 LINE L2 -557 2757 2440 5822 194 80 35 chr6 144763035 144764560 -37650682 + L1MC4 LINE L1 6459 8036 -6 331 315 0 0 chr6 144764892 144764981 -37650261 - L1MC4 LINE L1 -1339 6703 6615 333 239 0 0 chr6 144764984 144765072 -37650170 + L1MC4 LINE L1 6614 6701 -1341 2125 139 68 8 chr6 144765277 144765645 -37649597 - MLT1B LTR MaLR 0 390 1 433 261 132 46 chr6 144765679 144766027 -37649215 + L1MC5 LINE L1 7540 7917 -44 1183 196 125 35 chr6 144766268 144766472 -37648770 + MER44D DNA MER2_type 1 185 -2306 2460 160 29 7 chr6 144766472 144766921 -37648321 + MER65C LTR ERV1 1 459 -2 1183 196 125 35 chr6 144766921 144767027 -37648215 + MER44D DNA MER2_type 185 609 0 1484 245 66 30 chr6 144767566 144767943 -37647299 + L2 LINE L2 2066 2463 -851 2173 168 25 0 chr6 144767943 144768336 -37646906 + MER57A LTR ERV1 1 403 0 1484 245 66 30 chr6 144768336 144768399 -37646843 + L2 LINE L2 2463 2522 -792 367 286 123 25 chr6 144768512 144768715 -37646527 - L1MEd LINE L1 -5763 356 134 348 289 153 61 chr6 144769942 144769974 -37645268 - HAL1 LINE L1 -8 2499 2471 2199 103 3 3 chr6 144769974 144770294 -37644948 + AluSx SINE Alu 1 312 0 348 289 153 61 chr6 144770294 144770555 -37644687 - HAL1 LINE L1 -36 2471 2179 740 208 130 16 chr6 144770569 144770761 -37644481 + MIR SINE MIR 8 221 -41 259 207 87 33 chr6 144770925 144771075 -37644167 - HAL1 LINE L1 -1325 1182 1025 307 291 63 58 chr6 144771102 144771325 -37643917 - LTR41 LTR ERVL -3 770 547 2638 205 52 20 chr6 144771420 144772163 -37643079 - L1 LINE L1 -2344 3802 3036 302 0 0 26 chr6 144772172 144772211 -37643031 + (TTA)n Simple_repeat Simple_repeat 3 40 0 12297 22 1 1 chr6 144772211 144774405 -37640837 - L1PA3 LINE L1 -18 6137 3947 318 48 0 0 chr6 144774405 144774447 -37640795 + L1P LINE L1 2335 2376 -3770 1522 168 7 3 chr6 144824456 144824748 -37590494 - L1P3 LINE L1 -5582 293 1 192 125 0 0 chr6 144826124 144826156 -37589086 + (T)n Simple_repeat Simple_repeat 1 32 0 632 251 85 76 chr6 144826653 144827219 -37588023 - HAL1 LINE L1 0 2507 1937 881 85 0 21 chr6 144827233 144827374 -37587868 + L1PA13 LINE L1 6026 6163 0 913 236 132 57 chr6 144827386 144827809 -37587433 + LTR16B LTR ERVL 1 455 -9 1320 267 106 25 chr6 144828217 144828264 -37586978 + HERVL LTR ERVL 544 586 -4410 2456 68 0 0 chr6 144828264 144828557 -37586685 - AluY SINE Alu -18 293 1 1320 267 106 25 chr6 144828557 144828859 -37586383 + HERVL LTR ERVL 586 953 -4043 2190 140 19 22 chr6 144828859 144829224 -37586018 + THE1B LTR MaLR 1 364 0 1320 267 106 25 chr6 144829224 144829404 -37585838 + HERVL LTR ERVL 953 1117 -3879 1434 342 29 16 chr6 144829436 144830307 -37584935 + HERVL LTR ERVL 3996 4846 -808 297 95 0 0 chr6 144830320 144830362 -37584880 - MLT2B1 LTR ERVL 0 464 423 414 0 0 0 chr6 144830362 144830408 -37584834 + (CA)n Simple_repeat Simple_repeat 2 47 0 327 254 23 34 chr6 144830472 144830649 -37584593 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 * 442 214 29 17 chr6 144830542 144830715 -37584527 + (TA)n Simple_repeat Simple_repeat 1 175 0 312 211 8 39 chr6 144830759 144830887 -37584355 + (TA)n Simple_repeat Simple_repeat 2 125 0 22 35 0 0 chr6 144830889 144830918 -37584324 + AT_rich Low_complexity Low_complexity 1 29 0 227 216 63 81 chr6 144830920 144831031 -37584211 + HAL1 LINE L1 1939 2047 -460 1964 193 74 18 chr6 144831121 144831566 -37583676 - MLT2B1 LTR ERVL -50 470 1 1480 96 0 0 chr6 144832148 144832336 -37582906 - AluSq SINE Alu -125 188 1 267 350 60 8 chr6 144832971 144833088 -37582154 - L2 LINE L2 -1 3271 3149 2310 283 70 28 chr6 144834673 144835903 -37579339 + L1MEc LINE L1 38 1188 -4925 369 250 155 30 chr6 144835896 144836088 -37579154 + L1MEc LINE L1 1439 1674 -4722 * 249 33 0 0 chr6 144836088 144836118 -37579124 + (CA)n Simple_repeat Simple_repeat 2 31 0 369 250 155 30 chr6 144836118 144836189 -37579053 + L1MEc LINE L1 1674 1735 -4661 319 328 76 35 chr6 144836189 144836532 -37578710 - L1MEc LINE L1 -3698 2454 2112 238 291 12 23 chr6 144836857 144836943 -37578299 - L1MC/D LINE L1 -735 5609 5525 1906 224 67 18 chr6 144836977 144837576 -37577666 - L1MC/D LINE L1 -1102 5044 4417 273 284 128 0 chr6 144837651 144837753 -37577489 + HERVL LTR ERVL 2354 2468 -3186 1050 158 0 49 chr6 144838073 144838256 -37576986 - AluJo SINE Alu -21 291 118 32 0 0 0 chr6 144838256 144838288 -37576954 + AT_rich Low_complexity Low_complexity 1 32 0 783 169 0 8 chr6 144838288 144838418 -37576824 - AluJo SINE Alu -169 133 5 399 314 39 6 chr6 144838453 144838609 -37576633 + HERVL LTR ERVL 3001 3161 -2603 2522 210 60 7 chr6 144838973 144839554 -37575688 - MER90 LTR ERV1 -2 612 1 607 272 87 14 chr6 144839754 144840041 -37575201 + HERVL LTR ERVL 3415 3722 -2042 228 139 0 0 chr6 144840688 144840731 -37574511 + L1ME4a LINE L1 6075 6117 -4 838 242 105 25 chr6 144841267 144841650 -37573592 - MER57A LTR ERV1 0 403 1 669 260 105 5 chr6 144842165 144842365 -37572877 - MIR SINE MIR -30 232 13 2291 109 0 10 chr6 144842458 144842770 -37572472 + AluSg SINE Alu 1 309 -1 21 0 0 0 chr6 144843423 144843444 -37571798 + AT_rich Low_complexity Low_complexity 1 21 0 506 325 147 3 chr6 144843881 144844201 -37571041 - L2 LINE L2 0 3313 2948 511 31 0 0 chr6 144845540 144845604 -37569638 + L1PA3 LINE L1 6089 6152 -3 522 237 26 129 chr6 144845700 144845871 -37569371 - MER5A DNA MER1_type -3 185 25 2458 135 54 15 chr6 144845873 144846281 -37568961 - MSTA LTR MaLR -3 425 2 8175 147 27 82 chr6 144846284 144847475 -37567767 - MSTA-int LTR MaLR -6 1645 492 366 157 12 48 chr6 144847475 144847558 -37567684 + MADE1 DNA Mariner 1 80 0 8175 147 27 82 chr6 144847558 144848025 -37567217 - MSTA-int LTR MaLR -1159 492 1 2128 164 42 47 chr6 144848027 144848455 -37566787 - MSTA LTR MaLR -2 426 1 1441 182 80 28 chr6 144848455 144848779 -37566463 - MSTA LTR MaLR -87 341 1 192 280 0 0 chr6 144848889 144848939 -37566303 + MER5A DNA MER1_type 118 167 -22 1302 144 4 51 chr6 144849218 144849474 -37565768 - L1PB4 LINE L1 -4 6152 5909 5253 139 47 4 chr6 144849507 144850488 -37564754 - L1PA16 LINE L1 -8 6158 5155 21 71 0 0 chr6 144850896 144850938 -37564304 + AT_rich Low_complexity Low_complexity 1 42 0 1643 172 25 25 chr6 144851286 144851615 -37563627 + AluJo SINE Alu 1 329 0 440 284 100 13 chr6 144851859 144852098 -37563144 + L1ME4a LINE L1 4243 4502 -1644 14033 188 21 14 chr6 144852119 144853642 -37561600 - L1PB1 LINE L1 -8 6859 5348 1965 151 3 0 chr6 144853642 144853963 -37561279 + AluSq SINE Alu 1 313 0 14033 188 21 14 chr6 144853963 144858012 -37557230 - L1PB1 LINE L1 -1519 5348 1093 3105 214 176 0 chr6 144858015 144858900 -37556342 - L1PB1 LINE L1 -5817 1046 6 410 347 86 17 chr6 144859334 144859752 -37555490 + L1ME4a LINE L1 4944 5390 -756 636 270 94 88 chr6 144859783 144860327 -37554915 - MLT1H LTR MaLR 0 549 3 382 282 57 53 chr6 144860397 144860606 -37554636 + L1ME4a LINE L1 5484 5693 -428 4229 211 22 60 chr6 144860631 144861778 -37553464 + MER52A LTR ERV1 3 1105 -650 3942 190 43 23 chr6 144861779 144862615 -37552627 + MER52A LTR ERV1 903 1755 0 355 278 48 21 chr6 144862714 144862901 -37552341 + L1ME4a LINE L1 5687 5878 -243 209 282 0 58 chr6 144864293 144864396 -37550846 - MIR SINE MIR -74 188 92 29 47 0 0 chr6 144864739 144864782 -37550460 + AT_rich Low_complexity Low_complexity 1 43 0 341 245 0 86 chr6 144865239 144865402 -37549840 - L1ME LINE L1 -346 5775 5627 23 0 0 0 chr6 144865708 144865731 -37549511 + AT_rich Low_complexity Low_complexity 1 23 0 801 248 50 5 chr6 144866037 144866239 -37549003 + MIR SINE MIR 6 216 -46 571 87 0 43 chr6 144866303 144866395 -37548847 - L1PA8 LINE L1 -6 6166 6079 2312 101 0 0 chr6 144866832 144867129 -37548113 - AluSx SINE Alu -15 297 1 2230 105 0 0 chr6 144867326 144867620 -37547622 - AluSg SINE Alu -16 294 1 2194 96 0 0 chr6 144867814 144868144 -37547098 + AluSx SINE Alu 1 330 0 4080 150 36 26 chr6 144868709 144869538 -37545704 - L1MA8 LINE L1 0 6291 5455 3817 134 21 2 chr6 144869718 144870431 -37544811 - L1MA8 LINE L1 -743 5403 4721 545 264 77 73 chr6 144870624 144870885 -37544357 + L2 LINE L2 3046 3307 -6 327 234 0 11 chr6 144872781 144872875 -37542367 - L1ME LINE L1 -348 5773 5681 410 299 51 15 chr6 144873116 144873313 -37541929 - LTR16A LTR ERVL -20 430 227 777 174 0 0 chr6 144874226 144874347 -37540895 + FLAM_C SINE Alu 1 121 -12 230 313 0 0 chr6 144874561 144874641 -37540601 + L1MDa LINE L1 50 129 -6411 1102 103 20 59 chr6 144875125 144875329 -37539913 - LTR62 LTR ERVK -523 196 1 315 298 35 9 chr6 144875331 144875445 -37539797 + MIR SINE MIR 92 208 -54 436 234 64 0 chr6 144875801 144875895 -37539347 - MIR SINE MIR -31 231 132 2277 110 7 0 chr6 144876232 144876542 -37538700 - AluSx SINE Alu 0 312 1 395 294 43 8 chr6 144878175 144878364 -37536878 - MIR SINE MIR -13 249 2 22 35 0 0 chr6 144879343 144879372 -37535870 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 144879394 144879415 -37535827 + AT_rich Low_complexity Low_complexity 1 21 0 1726 184 6 29 chr6 144879540 144879855 -37535387 - AluJb SINE Alu -4 308 1 2339 90 0 16 chr6 144880329 144880641 -37534601 + AluY SINE Alu 1 307 -4 847 235 43 71 chr6 144880642 144880897 -37534345 - MIR SINE MIR -8 254 7 1197 116 0 0 chr6 144881152 144881324 -37533918 - AluSg/x SINE Alu -7 305 134 281 366 10 0 chr6 144881642 144881743 -37533499 - L2 LINE L2 -16 3256 3155 * 550 301 0 0 chr6 144881737 144881893 -37533349 - MIR SINE MIR -57 205 50 24 53 0 0 chr6 144883230 144883268 -37531974 + AT_rich Low_complexity Low_complexity 1 38 0 4679 63 116 123 chr6 144883303 144884131 -37531111 - LTR12 LTR ERV1 -4 822 1 1957 193 7 30 chr6 144884264 144884669 -37530573 + MSTD LTR MaLR 1 396 0 459 295 159 0 chr6 144884789 144884996 -37530246 - MIR SINE MIR 0 262 23 706 176 0 0 chr6 144886568 144886676 -37528566 - FRAM SINE Alu -35 141 34 189 0 0 0 chr6 144887113 144887134 -37528108 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 383 340 77 19 chr6 144887139 144887295 -37527947 + MIR3 SINE MIR 40 204 -4 460 363 162 12 chr6 144887310 144887803 -37527439 + L3 LINE CR1 922 1488 -89 333 313 8 15 chr6 144888036 144888170 -37527072 + LTR16B LTR ERVL 329 461 -3 23 0 0 0 chr6 144889307 144889330 -37525912 + AT_rich Low_complexity Low_complexity 1 23 0 654 303 26 26 chr6 144889484 144889715 -37525527 + MIR SINE MIR 1 231 -31 22 0 0 0 chr6 144889824 144889846 -37525396 + AT_rich Low_complexity Low_complexity 1 22 0 222 214 54 18 chr6 144890709 144890765 -37524477 - L2 LINE L2 0 3313 3256 653 330 120 33 chr6 144891785 144892428 -37522814 + L2 LINE L2 1463 2161 -1153 2238 175 16 99 chr6 144892446 144892800 -37522442 - Charlie6 DNA MER1_type -39 3461 3180 1681 189 4 0 chr6 144892800 144893080 -37522162 + AluJo SINE Alu 24 304 -8 2238 175 16 99 chr6 144893080 144893352 -37521890 - Charlie6 DNA MER1_type -320 3180 2887 411 185 8 17 chr6 144893818 144893937 -37521305 + CT-rich Low_complexity Low_complexity 2 119 0 746 205 6 6 chr6 144894556 144894727 -37520515 - Charlie6 DNA MER1_type -601 2899 2729 1255 191 27 4 chr6 144894744 144895006 -37520236 + L1M4 LINE L1 5527 5794 -384 10417 199 54 29 chr6 144895010 144897077 -37518165 - Charlie6 DNA MER1_type -766 2734 593 2078 117 7 0 chr6 144897077 144897377 -37517865 + AluSg SINE Alu 1 302 -8 10417 199 54 29 chr6 144897377 144897786 -37517456 - Charlie6 DNA MER1_type -2907 593 196 609 323 148 50 chr6 144897903 144898858 -37516384 + L2 LINE L2 2185 3222 -50 23 0 0 0 chr6 144899434 144899457 -37515785 + AT_rich Low_complexity Low_complexity 1 23 0 2456 153 18 27 chr6 144900140 144900578 -37514664 - Tigger2a DNA MER2_type 0 434 1 1891 269 50 57 chr6 144900898 144901895 -37513347 + L1MEc LINE L1 1370 2322 -3893 2184 127 0 0 chr6 144901895 144902195 -37513047 + AluSg SINE Alu 5 304 -6 1891 269 50 57 chr6 144902195 144902475 -37512767 + L1MEc LINE L1 2322 2602 -3613 1929 161 15 59 chr6 144902480 144902722 -37512520 + MLT2C1 LTR ERVL 1 219 -178 2561 33 0 7 chr6 144902722 144903022 -37512220 + AluY SINE Alu 1 298 -13 1929 161 15 59 chr6 144903022 144903188 -37512054 + MLT2C1 LTR ERVL 219 391 -6 1438 240 79 2 chr6 144903217 144903688 -37511554 + L1MEc LINE L1 2646 3152 -3063 * 7578 176 30 30 chr6 144903674 144905269 -37509973 + L1MCa LINE L1 1 1594 -4832 1916 153 39 31 chr6 144905269 144905628 -37509614 - THE1B LTR MaLR 0 364 3 7934 124 17 1 chr6 144905630 144906828 -37508414 - THE1B-int LTR MaLR 0 1580 1 2285 102 54 23 chr6 144906828 144907181 -37508061 - THE1B LTR MaLR 0 364 1 3407 168 47 49 chr6 144907182 144908226 -37507016 - L1MCa LINE L1 -3695 2734 1689 430 58 0 0 chr6 144908231 144908283 -37506959 + THE1B LTR MaLR 1 52 -312 5066 85 5 0 chr6 144908285 144908934 -37506308 + THE1B-int LTR MaLR 929 1580 0 2279 98 51 31 chr6 144908934 144909290 -37505952 + THE1B LTR MaLR 1 363 -1 7569 236 30 25 chr6 144909291 144909865 -37505377 + L1M4 LINE L1 2454 3023 -3123 3987 177 29 8 chr6 144909865 144910110 -37505132 + MER44D DNA MER2_type 1 239 -2248 1618 130 7 97 chr6 144910110 144910418 -37504824 - AluSx SINE Alu -18 294 15 3987 177 29 8 chr6 144910418 144910890 -37504352 + MER44D DNA MER2_type 239 605 0 7569 236 30 25 chr6 144910890 144912353 -37502889 + L1M4 LINE L1 3023 4508 -1638 2162 118 7 0 chr6 144912353 144912649 -37502593 + AluSx SINE Alu 1 298 -14 7569 236 30 25 chr6 144912649 144912869 -37502373 + L1M4 LINE L1 4508 4725 -1421 411 131 1 0 chr6 144912920 144912993 -37502249 - L1MC2 LINE L1 -197 6147 6076 3952 141 13 13 chr6 144913256 144914472 -37500770 - L1MA5 LINE L1 -360 5940 4728 226 290 0 0 chr6 144916390 144916452 -37498790 - MER5A DNA MER1_type 0 189 128 402 245 201 22 chr6 144916512 144916651 -37498591 + MER5A DNA MER1_type 23 186 -3 1551 229 24 0 chr6 144917330 144917662 -37497580 + MER58B DNA MER1_type 1 340 -1 2392 86 0 3 chr6 144917696 144917997 -37497245 - AluSq SINE Alu -13 300 1 1440 163 129 16 chr6 144918321 144918684 -37496558 - Charlie1b DNA MER1_type -6 517 114 12449 164 25 9 chr6 144918684 144922171 -37493071 + L1MA5A LINE L1 2748 6292 -5 2777 228 53 1 chr6 144922185 144922846 -37492396 + L1ME1 LINE L1 5467 6161 -5 623 126 10 0 chr6 144922868 144922971 -37492271 + L1MB3 LINE L1 6077 6180 -3 520 160 200 0 chr6 144922994 144923094 -37492148 - Charlie1b DNA MER1_type -397 126 7 342 98 0 0 chr6 144923135 144923186 -37492056 + (CA)n Simple_repeat Simple_repeat 1 51 0 516 212 98 98 chr6 144923688 144923881 -37491361 - MLT1K LTR MaLR -41 547 355 321 305 46 0 chr6 144924433 144924573 -37490669 - MIR SINE MIR -67 141 3 880 299 137 20 chr6 144924615 144925059 -37490183 - L2 LINE L2 -1 3312 2817 250 404 18 0 chr6 144925241 144925350 -37489892 - L2 LINE L2 -1 3271 3161 353 0 70 0 chr6 144926413 144926470 -37488772 + (TA)n Simple_repeat Simple_repeat 2 62 0 213 189 47 47 chr6 144926481 144926608 -37488634 + (TA)n Simple_repeat Simple_repeat 2 128 0 28 71 0 0 chr6 144927365 144927421 -37487821 + AT_rich Low_complexity Low_complexity 1 56 0 4849 178 35 6 chr6 144928102 144929656 -37485586 + L1MB1 LINE L1 4565 6167 -1 468 273 119 52 chr6 144930171 144930569 -37484673 - MLT1I LTR MaLR 0 422 3 2022 111 7 4 chr6 144930837 144931143 -37484099 + AluY SINE Alu 1 307 0 191 357 47 34 chr6 144931176 144931411 -37483831 - L2 LINE L2 -1009 2305 2068 365 369 36 54 chr6 144931862 144932198 -37483044 + L2 LINE L2 2554 2883 -431 181 287 93 37 chr6 144932239 144932347 -37482895 + L2 LINE L2 2978 3091 -181 514 316 110 37 chr6 144933073 144933481 -37481761 - L1MEd LINE L1 -4862 1257 820 345 275 138 31 chr6 144935314 144935382 -37479860 - MIR SINE MIR 0 262 203 1896 133 64 28 chr6 144935382 144935743 -37479499 + THE1C LTR MaLR 1 374 -1 345 275 138 31 chr6 144935743 144935834 -37479408 - MIR SINE MIR -59 203 86 7075 51 14 3 chr6 144935922 144936958 -37478284 - L1PA7 LINE L1 0 6154 5115 251 179 38 0 chr6 144936998 144937104 -37478138 + (TA)n Simple_repeat Simple_repeat 2 111 0 233 164 0 36 chr6 144937223 144937278 -37477964 + (TATG)n Simple_repeat Simple_repeat 2 54 0 270 0 0 0 chr6 144937701 144937731 -37477511 + (T)n Simple_repeat Simple_repeat 1 30 0 221 172 25 180 chr6 144938333 144938455 -37476787 - MER5B DNA MER1_type 0 178 76 249 110 49 49 chr6 144938500 144938582 -37476660 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 1553 189 73 53 chr6 144938815 144939267 -37475975 + MER89 LTR ERV1 1 559 0 576 237 0 9 chr6 144939635 144939749 -37475493 + MER8 DNA MER2_type 2 114 -125 246 89 0 44 chr6 144939756 144939801 -37475441 + L1MC4 LINE L1 6661 6703 -1339 231 167 0 0 chr6 144939802 144939844 -37475398 + (TA)n Simple_repeat Simple_repeat 1 42 0 195 129 0 0 chr6 144939889 144939920 -37475322 + (TA)n Simple_repeat Simple_repeat 1 31 0 268 261 0 11 chr6 144939920 144940008 -37475234 + L1MC4 LINE L1 6614 6700 -1342 525 186 0 0 chr6 144940008 144940094 -37475148 + MER8 DNA MER2_type 154 239 0 315 280 280 0 chr6 144940902 144941034 -37474208 - MER5B DNA MER1_type -6 172 4 502 173 188 15 chr6 144941485 144941618 -37473624 + MER5B DNA MER1_type 7 162 -16 288 231 394 12 chr6 144941791 144941951 -37473291 - MIR SINE MIR -13 249 29 534 243 68 20 chr6 144941994 144942144 -37473098 - MIR SINE MIR -27 181 21 22 35 0 0 chr6 144942280 144942309 -37472933 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 144942542 144942563 -37472679 + AT_rich Low_complexity Low_complexity 1 21 0 364 264 8 0 chr6 144942850 144942951 -37472291 - MER5A DNA MER1_type -84 105 4 875 200 54 63 chr6 144942959 144943164 -37472078 + MER63A DNA MER1_type 8 210 0 287 147 73 0 chr6 144943997 144944065 -37471177 + MIR SINE MIR 119 191 -71 356 229 83 28 chr6 144945694 144945803 -37469439 + MIR SINE MIR 20 134 -128 2299 117 5 41 chr6 144945911 144946040 -37469202 - THE1A LTR MaLR 0 355 223 2090 126 10 0 chr6 144946040 144946333 -37468909 - AluSx SINE Alu -16 296 1 2299 117 5 41 chr6 144946333 144946571 -37468671 - THE1A LTR MaLR -132 223 1 253 310 28 0 chr6 144946593 144946664 -37468578 - L2 LINE L2 0 3313 3241 317 224 0 0 chr6 144946680 144946756 -37468486 - L1M4 LINE L1 -1288 4858 4783 342 0 0 0 chr6 144946898 144946936 -37468306 + (GA)n Simple_repeat Simple_repeat 1 38 0 2246 208 115 6 chr6 144947598 144948078 -37467164 - MLT1F1 LTR MaLR -35 532 1 878 257 93 21 chr6 144948518 144949134 -37466108 - L1MC4a LINE L1 -584 5775 5271 1072 148 111 0 chr6 144949155 144949344 -37465898 + L1PB4 LINE L1 5934 6143 -13 188 167 0 48 chr6 144949728 144949770 -37465472 + MIR SINE MIR 119 158 -104 2605 87 31 6 chr6 144950558 144950913 -37464329 + THE1B LTR MaLR 1 364 0 28 29 0 0 chr6 144952817 144952852 -37462390 + AT_rich Low_complexity Low_complexity 1 35 0 211 294 221 0 chr6 144953544 144953612 -37461630 - MIR SINE MIR -79 129 47 377 313 68 0 chr6 144953814 144953977 -37461265 + MIR SINE MIR 41 214 -48 250 219 0 0 chr6 144953977 144954041 -37461201 + L1PB4 LINE L1 6092 6155 -1 32 26 0 0 chr6 144954044 144954083 -37461159 + AT_rich Low_complexity Low_complexity 1 39 0 280 265 15 0 chr6 144954099 144954167 -37461075 + MIR SINE MIR 194 262 0 220 340 32 11 chr6 144954168 144954262 -37460980 - MIR SINE MIR -26 236 141 401 236 236 0 chr6 144954373 144954479 -37460763 + MER58C DNA MER1_type 80 210 -5 309 282 24 136 chr6 144954573 144954623 -37460619 - L2 LINE L2 -1 3271 3217 1478 201 72 37 chr6 144954623 144954972 -37460270 - MLT1A1 LTR MaLR 0 365 5 309 282 24 136 chr6 144954972 144955215 -37460027 - L2 LINE L2 -55 3217 3011 182 393 54 0 chr6 144955455 144955567 -37459675 - L2 LINE L2 -557 2757 2640 757 305 48 57 chr6 144955567 144956230 -37459012 + L1MEc LINE L1 43 699 -5697 655 259 46 49 chr6 144956229 144956596 -37458646 + L1M4 LINE L1 3014 3379 -2767 * 2609 184 41 11 chr6 144956717 144957259 -37457983 - MER89 LTR ERV1 -1 558 1 303 380 48 0 chr6 144957883 144958070 -37457172 - L2 LINE L2 -778 2536 2341 1880 151 28 0 chr6 144958233 144958518 -37456724 - AluSx SINE Alu -14 298 6 448 239 155 37 chr6 144958781 144958979 -37456263 + MIR SINE MIR 42 262 0 26 0 0 0 chr6 144959026 144959052 -37456190 + AT_rich Low_complexity Low_complexity 1 26 0 240 318 15 15 chr6 144959295 144959361 -37455881 - L2 LINE L2 -13 3259 3194 194 309 29 66 chr6 144959391 144959634 -37455608 - L2 LINE L2 0 3313 3080 21 36 0 0 chr6 144959704 144959732 -37455510 + AT_rich Low_complexity Low_complexity 1 28 0 208 352 120 7 chr6 144960140 144960282 -37454960 - MIR3 SINE MIR -7 201 44 198 222 167 0 chr6 144960322 144960376 -37454866 - L2 LINE L2 -3 3269 3207 237 174 43 58 chr6 144960937 144961006 -37454236 + AluSc SINE Alu 188 255 -44 2457 286 71 40 chr6 144961016 144962203 -37453039 + L2 LINE L2 2091 3313 0 2223 89 30 10 chr6 144962253 144962557 -37452685 + AluY SINE Alu 1 310 -1 383 38 19 0 chr6 144962744 144962797 -37452445 + (GA)n Simple_repeat Simple_repeat 1 54 0 36 33 0 16 chr6 144963820 144963844 -37451398 + AT_rich Low_complexity Low_complexity 1 24 -36 1979 163 0 9 chr6 144963844 144964187 -37451055 - L1PA16 LINE L1 -10 6156 5817 36 33 0 16 chr6 144964187 144964223 -37451019 + AT_rich Low_complexity Low_complexity 24 60 0 1798 149 111 33 chr6 144964328 144964725 -37450517 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr6 144965871 144965893 -37449349 + AT_rich Low_complexity Low_complexity 1 22 0 213 256 194 22 chr6 144966075 144966194 -37449048 + MER5A DNA MER1_type 6 152 -37 1932 141 3 69 chr6 144966197 144966558 -37448684 - MER1B DNA MER1_type 0 337 1 432 326 119 5 chr6 144966656 144966874 -37448368 - MIR SINE MIR 0 262 20 23 0 0 0 chr6 144968430 144968453 -37446789 + AT_rich Low_complexity Low_complexity 1 23 0 722 306 66 40 chr6 144968836 144969183 -37446059 + L1MEd LINE L1 2 357 -5762 332 47 0 0 chr6 144969196 144969239 -37446003 - MADE1 DNA Mariner -37 43 1 389 254 85 79 chr6 144969436 144969660 -37445582 + L1MEd LINE L1 646 867 -5252 1523 169 87 47 chr6 144969660 144969806 -37445436 - MER46B DNA MER2_type -2496 235 191 1722 167 16 32 chr6 144969806 144970118 -37445124 - AluJo SINE Alu -5 307 1 1523 169 87 47 chr6 144970118 144970315 -37444927 - MER46B DNA MER2_type -2540 191 3 389 254 85 79 chr6 144970315 144970586 -37444656 + L1MEd LINE L1 867 1144 -4975 533 316 60 21 chr6 144970621 144970953 -37444289 + L1MEd LINE L1 1216 1560 -4569 477 186 47 0 chr6 144971119 144971205 -37444037 + MLT1D LTR MaLR 3 92 -413 3241 123 98 9 chr6 144971256 144971810 -37443432 - L1PB3 LINE L1 0 6154 5552 348 182 29 118 chr6 144971812 144972025 -37443217 + MLT1E2 LTR MaLR 44 243 -262 726 289 107 32 chr6 144972119 144973348 -37441894 + L1MEd LINE L1 2131 3451 -2678 273 250 0 0 chr6 144973661 144973729 -37441513 + MLT1J2 LTR MaLR 363 430 -20 407 272 109 20 chr6 144973782 144973984 -37441258 + L1MEd LINE L1 3530 3749 -2380 196 272 221 22 chr6 144974022 144974158 -37441084 - L2 LINE L2 0 3313 3151 200 383 37 0 chr6 144974163 144974270 -37440972 - L3 LINE CR1 -545 1032 922 24 32 0 0 chr6 144974686 144974717 -37440525 + AT_rich Low_complexity Low_complexity 1 31 0 380 326 25 36 chr6 144974936 144975229 -37440013 - L1M4 LINE L1 -1758 4388 4098 2433 40 0 56 chr6 144975229 144975553 -37439689 - AluY SINE Alu -5 306 1 380 326 25 36 chr6 144975553 144975618 -37439624 - L1M4 LINE L1 -2048 4098 4034 350 285 54 39 chr6 144975689 144975819 -37439423 - MIR SINE MIR -108 154 23 227 261 77 31 chr6 144975865 144975995 -37439247 + L1 LINE L1 2267 2402 -3744 2276 117 0 0 chr6 144976397 144976705 -37438537 + AluSq SINE Alu 3 310 -3 9735 93 7 1 chr6 144976992 144979143 -37436099 + L1PA7 LINE L1 3955 6140 -14 2033 136 0 3 chr6 144979358 144979653 -37435589 + AluSg SINE Alu 1 294 -16 374 259 193 49 chr6 144979712 144980017 -37435225 + L1ME4a LINE L1 5565 5913 -208 2778 98 2 10 chr6 144980726 144981126 -37434116 + THE1B-int LTR MaLR 1184 1580 0 2143 140 31 14 chr6 144981126 144981483 -37433759 + THE1B LTR MaLR 1 363 -1 231 356 11 0 chr6 144981484 144981571 -37433671 + L2 LINE L2 2994 3081 -191 284 267 195 24 chr6 144982635 144982782 -37432460 + HAL1b LINE L1 1206 1327 -21 2040 136 54 23 chr6 144982782 144983135 -37432107 + THE1B LTR MaLR 1 364 0 11715 92 7 1 chr6 144983135 144984705 -37430537 + THE1B-int LTR MaLR 1 1580 0 1925 122 90 32 chr6 144984705 144985049 -37430193 + THE1B LTR MaLR 1 364 0 284 267 195 24 chr6 144985049 144985280 -37429962 + HAL1b LINE L1 1326 1339 -9 2086 121 34 0 chr6 144987009 144987306 -37427936 + AluSq SINE Alu 1 307 -6 833 172 89 6 chr6 144988182 144988351 -37426891 - MER5A DNA MER1_type 0 189 7 627 160 0 0 chr6 144988415 144988521 -37426721 + L1 LINE L1 3818 3923 -2223 341 303 104 39 chr6 144988527 144988758 -37426484 - L1M4 LINE L1 -678 5506 5261 34 0 0 0 chr6 144988831 144988865 -37426377 + AT_rich Low_complexity Low_complexity 1 34 0 1165 153 0 0 chr6 144988968 144989297 -37425945 - AluSg/x SINE Alu 0 462 134 263 133 183 0 chr6 144989621 144989681 -37425561 - MER41A LTR ERV1 -88 466 396 353 311 35 46 chr6 144989703 144989963 -37425279 - L1M4 LINE L1 -1482 4664 4408 623 288 106 18 chr6 144990915 144991330 -37423912 + L1ME4a LINE L1 5458 5919 -202 822 330 14 4 chr6 144991656 144991935 -37423307 + LTR16A LTR ERVL 119 400 -50 355 381 29 14 chr6 144991966 144992176 -37423066 - MIR SINE MIR -43 219 7 285 305 47 23 chr6 144992207 144992335 -37422907 + L2 LINE L2 3160 3290 -23 1660 202 46 6 chr6 144992992 144993343 -37421899 + MLT1A1 LTR MaLR 1 365 0 2155 122 0 0 chr6 144994098 144994392 -37420850 + AluSx SINE Alu 12 305 -7 2385 108 30 25 chr6 144994707 144995069 -37420173 - THE1B LTR MaLR 0 364 1 30 45 0 0 chr6 144995153 144995197 -37420045 + AT_rich Low_complexity Low_complexity 1 44 0 231 167 0 0 chr6 144995554 144995596 -37419646 + (CA)n Simple_repeat Simple_repeat 1 42 0 473 194 10 20 chr6 144997095 144997193 -37418049 - Tigger7 DNA MER2_type -1 2486 2390 * 1460 196 4 15 chr6 144997192 144997462 -37417780 - Tigger7 DNA MER2_type -2220 267 1 1070 258 21 14 chr6 144998315 144998598 -37416644 + MLT1J1 LTR MaLR 3 287 -159 448 319 70 26 chr6 144999318 144999547 -37415695 - L3 LINE CR1 -1 1576 1338 541 29 0 0 chr6 144999609 144999679 -37415563 - L1PA4 LINE L1 -3 6152 6083 719 199 177 16 chr6 145000944 145001130 -37414112 - MIR SINE MIR -28 234 19 288 368 63 45 chr6 145001439 145001836 -37413406 - L2 LINE L2 -338 2976 2573 345 100 0 0 chr6 145002107 145002157 -37413085 + (TG)n Simple_repeat Simple_repeat 2 51 0 194 98 78 0 chr6 145002157 145002208 -37413034 + (TA)n Simple_repeat Simple_repeat 1 55 0 809 306 67 17 chr6 145003181 145003541 -37411701 + MLT1I LTR MaLR 32 409 0 507 233 43 17 chr6 145003777 145003893 -37411349 + MIR SINE MIR 4 122 -140 1042 39 0 0 chr6 145004072 145004201 -37411041 - L1P3 LINE L1 -683 5489 5361 1343 74 40 20 chr6 145004201 145004402 -37410840 + L1PA8 LINE L1 5960 6165 -7 466 364 38 0 chr6 145004503 145004739 -37410503 + L2 LINE L2 2633 2877 -437 1974 168 39 0 chr6 145004830 145005164 -37410078 - MER7A DNA MER2_type -1 345 1 205 162 0 0 chr6 145005164 145005201 -37410041 + (TG)n Simple_repeat Simple_repeat 2 38 0 1517 182 134 66 chr6 145005202 145005625 -37409617 - MLT2B1 LTR ERVL -46 508 60 6684 132 14 11 chr6 145005648 145007259 -37407983 - L1MA3 LINE L1 0 6305 4691 21 36 0 0 chr6 145007470 145007498 -37407744 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr6 145007701 145007724 -37407518 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 285 29 0 0 chr6 145007723 145007757 -37407485 + (TG)n Simple_repeat Simple_repeat 1 34 0 3720 256 32 19 chr6 145007908 145008045 -37407197 + L1MEc LINE L1 35 169 -6227 2365 184 15 21 chr6 145008045 145008513 -37406729 - MLT1C LTR MaLR 0 467 3 3720 256 32 19 chr6 145008513 145009510 -37405732 + L1MEc LINE L1 169 1183 -5213 3959 178 53 75 chr6 145009582 145010705 -37404537 + L1MA9 LINE L1 5086 6194 -118 363 288 94 69 chr6 145010740 145010973 -37404269 + L1 LINE L1 3866 4104 -2042 25 0 0 0 chr6 145012444 145012469 -37402773 + AT_rich Low_complexity Low_complexity 1 25 0 2143 62 4 0 chr6 145012523 145012780 -37402462 - AluY SINE Alu -19 292 35 3103 80 0 0 chr6 145013503 145013901 -37401341 + MLT2A1 LTR ERVL 1 398 -46 222 118 0 0 chr6 145013914 145013948 -37401294 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 326 102 0 0 chr6 145013951 145014000 -37401242 + MLT2A1 LTR ERVL 390 438 -6 375 219 16 57 chr6 145014215 145014338 -37400904 + LTR16C LTR ERVL 360 477 -14 235 185 19 0 chr6 145014473 145014527 -37400715 + LTR49 LTR ERV1 44 98 -497 448 158 0 0 chr6 145014569 145014645 -37400597 + MLT1D LTR MaLR 430 505 0 239 221 10 58 chr6 145014925 145015029 -37400213 + (CATATA)n Simple_repeat Simple_repeat 1 99 0 247 154 31 0 chr6 145015038 145015103 -37400139 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 398 255 40 40 chr6 145015190 145015339 -37399903 + L1ME LINE L1 5562 5710 -411 24 32 0 0 chr6 145015547 145015578 -37399664 + AT_rich Low_complexity Low_complexity 1 31 0 1045 135 6 12 chr6 145016254 145016265 -37398977 - AluSq SINE Alu -18 295 285 342 0 0 0 chr6 145016265 145016303 -37398939 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 1045 135 6 12 chr6 145016303 145016454 -37398788 - AluSq SINE Alu -28 285 134 195 289 39 0 chr6 145017101 145017153 -37398089 - L2 LINE L2 -78 3194 3141 773 188 0 0 chr6 145017365 145017498 -37397744 + FLAM_A SINE Alu 1 133 0 1868 254 21 50 chr6 145018035 145018510 -37396732 - L1ME2 LINE L1 -9 6224 5737 256 74 0 37 chr6 145018510 145018564 -37396678 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 2120 100 0 28 chr6 145018567 145018857 -37396385 - AluSq SINE Alu -31 282 1 1868 254 21 50 chr6 145018857 145019039 -37396203 - L1ME2 LINE L1 -498 5735 5582 2439 105 8 8 chr6 145019041 145019394 -37395848 - THE1A LTR MaLR -2 353 1 11446 101 9 5 chr6 145019394 145020966 -37394276 - THE1A-int LTR MaLR 0 1580 1 2476 105 11 6 chr6 145020966 145021319 -37393923 - THE1A LTR MaLR 0 355 1 2253 208 99 58 chr6 145021331 145021883 -37393359 - L1ME2 LINE L1 -674 5561 4976 1692 104 34 160 chr6 145021883 145022239 -37393003 - AluY SINE Alu 0 311 1 2253 208 99 58 chr6 145022239 145022713 -37392529 - L1ME2 LINE L1 -1259 4976 4523 897 280 56 28 chr6 145022712 145023144 -37392098 - L1ME2 LINE L1 -2226 3989 3546 * 22 35 0 0 chr6 145023177 145023206 -37392036 + AT_rich Low_complexity Low_complexity 1 29 0 42340 37 23 5 chr6 145023206 145029246 -37385996 - L1PA3 LINE L1 -4 6151 3 1738 266 121 10 chr6 145029251 145030331 -37384911 - L1ME2 LINE L1 -2726 3489 2271 4177 80 13 10 chr6 145030348 145030947 -37384295 - L1MA1 LINE L1 0 6302 5702 3917 122 7 5 chr6 145030948 145031865 -37383377 - L1M1 LINE L1 -521 5781 4864 320 262 196 25 chr6 145031842 145032128 -37383114 - L1ME2 LINE L1 -4059 2337 2003 * 1229 276 62 58 chr6 145032150 145033475 -37381767 - L1ME2 LINE L1 -4343 2053 660 435 379 17 7 chr6 145033639 145033940 -37381302 - L1ME2 LINE L1 -6056 340 37 670 211 0 115 chr6 145033956 145034164 -37381078 + L2 LINE L2 3113 3296 -17 2067 141 3 3 chr6 145035355 145035667 -37379575 + AluSx SINE Alu 1 312 0 566 256 122 90 chr6 145036614 145036976 -37378266 + MLT1L LTR MaLR 20 400 -215 2025 149 40 56 chr6 145036976 145037372 -37377870 - MLT1B LTR MaLR 0 390 1 566 256 122 90 chr6 145037372 145037442 -37377800 + MLT1L LTR MaLR 400 466 -149 16509 196 43 8 chr6 145038413 145043756 -37371486 + L1PA13 LINE L1 1 5557 -1240 2652 131 25 7 chr6 145043756 145044194 -37371048 + L1PA13 LINE L1 6361 6811 -3 23 54 0 0 chr6 145044239 145044276 -37370966 + AT_rich Low_complexity Low_complexity 1 37 0 2112 145 0 13 chr6 145044403 145044713 -37370529 + AluSx SINE Alu 1 306 -6 264 185 0 0 chr6 145045128 145045182 -37370060 + (TA)n Simple_repeat Simple_repeat 2 55 0 25 51 0 0 chr6 145046880 145046919 -37368323 + AT_rich Low_complexity Low_complexity 1 39 0 227 330 97 49 chr6 145048695 145048880 -37366362 + MIR3 SINE MIR 10 203 -5 216 175 18 35 chr6 145049708 145049765 -37365477 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 1106 186 44 135 chr6 145049781 145049964 -37365278 - MLT2C2 LTR ERVL -48 416 218 2338 55 0 0 chr6 145049964 145050256 -37364986 - L1PA5 LINE L1 0 6154 5863 1106 186 44 135 chr6 145050256 145050530 -37364712 - MLT2C2 LTR ERVL -246 218 1 297 103 17 11 chr6 145050578 145050820 -37364422 + AluSg SINE Alu 1 302 0 358 297 131 42 chr6 145051313 145051549 -37363693 + MIR SINE MIR 6 262 0 25 31 0 0 chr6 145052255 145052287 -37362955 + AT_rich Low_complexity Low_complexity 1 32 0 463 266 27 81 chr6 145052543 145052802 -37362440 + MIR SINE MIR 8 252 -10 2289 83 3 7 chr6 145053419 145053707 -37361535 - AluSg SINE Alu -11 299 13 22 35 0 0 chr6 145053708 145053737 -37361505 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 145054330 145054361 -37360881 + AT_rich Low_complexity Low_complexity 1 31 0 518 211 116 27 chr6 145055088 145055235 -37360007 - MIR SINE MIR -25 237 78 584 216 174 5 chr6 145055552 145055644 -37359598 + L1MC4 LINE L1 7807 7882 -160 360 43 0 0 chr6 145055644 145055690 -37359552 + (CA)n Simple_repeat Simple_repeat 1 46 0 584 216 174 5 chr6 145055690 145055787 -37359455 + L1MC4 LINE L1 7882 8028 -14 1541 295 56 67 chr6 145056563 145057126 -37358116 + L1MEc LINE L1 39 607 -5789 2522 131 45 17 chr6 145057126 145057546 -37357696 + MSTB1 LTR MaLR 1 432 0 1541 295 56 67 chr6 145057546 145058184 -37357058 + L1MEc LINE L1 607 1227 -5169 1645 297 42 29 chr6 145058246 145058873 -37356369 - MLT2F LTR ERVL -2 661 27 5898 256 62 38 chr6 145058890 145060768 -37354474 - ERVL-F LTR ERVL -7 5757 3835 2299 261 34 29 chr6 145060811 145061351 -37353891 + L1M4 LINE L1 4129 4676 -1470 2177 121 0 13 chr6 145061351 145061658 -37353584 + AluSx SINE Alu 1 303 -9 2299 261 34 29 chr6 145061658 145062069 -37353173 + L1M4 LINE L1 4676 5084 -1062 1432 171 15 89 chr6 145062073 145062400 -37352842 + MER31A LTR ERV1 62 366 -102 863 185 12 40 chr6 145062384 145062636 -37352606 - MLT1A2 LTR MaLR -84 306 1 * 1635 191 0 44 chr6 145063866 145064185 -37351057 - AluJo SINE Alu -5 307 3 182 226 38 19 chr6 145064648 145064701 -37350541 + L2 LINE L2 3250 3303 -10 191 213 0 21 chr6 145065129 145065176 -37350066 + MIR SINE MIR 31 76 -186 187 342 107 27 chr6 145066389 145066538 -37348704 - L2 LINE L2 -675 2639 2479 667 293 24 32 chr6 145066882 145067064 -37348178 - MIR SINE MIR 0 262 81 1231 218 44 93 chr6 145067064 145067634 -37347608 + MER34 LTR ERV1 1 542 0 667 293 24 32 chr6 145067634 145067704 -37347538 - MIR SINE MIR -181 81 12 24 53 0 0 chr6 145068668 145068706 -37346536 + AT_rich Low_complexity Low_complexity 1 38 0 290 295 39 0 chr6 145069621 145069699 -37345543 + MIR SINE MIR 84 164 -98 748 192 10 31 chr6 145070645 145070838 -37344404 - Charlie1 DNA MER1_type -1 2760 2572 2580 184 18 10 chr6 145070860 145071382 -37343860 - LTR27 LTR ERV1 0 501 3 296 164 104 0 chr6 145071387 145071454 -37343788 - Charlie1 DNA MER1_type -2596 165 92 626 273 0 13 chr6 145071622 145071772 -37343470 + MIR SINE MIR 49 196 -66 1601 187 67 23 chr6 145071844 145071861 -37343381 - MLT2D LTR ERVL -40 374 359 246 32 0 0 chr6 145071861 145071892 -37343350 + (CA)n Simple_repeat Simple_repeat 2 32 0 1601 187 67 23 chr6 145071892 145072216 -37343026 - MLT2D LTR ERVL -55 359 18 6126 112 7 27 chr6 145072226 145072540 -37342702 - MER4D LTR ERV1 -1 902 583 1509 97 60 0 chr6 145072540 145072756 -37342486 - MER30 DNA MER1_type 0 230 2 6126 112 7 27 chr6 145072756 145073362 -37341880 - MER4D LTR ERV1 -320 583 1 186 269 19 0 chr6 145073362 145073414 -37341828 + MIR SINE MIR 210 262 0 5426 86 19 4 chr6 145073624 145074379 -37340863 - MER4E LTR ERV1 0 766 1 291 54 0 0 chr6 145074566 145074603 -37340639 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 64 0 0 chr6 145074609 145074656 -37340586 + AT_rich Low_complexity Low_complexity 1 47 0 3309 132 46 6 chr6 145075368 145075991 -37339251 - MER39 LTR ERV1 -11 696 1 339 299 147 15 chr6 145076465 145076669 -37338573 + MIR SINE MIR 20 250 -12 293 212 0 0 chr6 145077281 145077347 -37337895 - AluS SINE Alu -2 298 233 445 245 45 105 chr6 145079525 145079725 -37335517 + MER5A DNA MER1_type 2 189 0 22 35 0 0 chr6 145080378 145080407 -37334835 + AT_rich Low_complexity Low_complexity 1 29 0 1581 191 0 21 chr6 145080587 145080869 -37334373 + AluJo SINE Alu 1 276 -36 2017 112 7 0 chr6 145082536 145082870 -37332372 + AluSc SINE Alu 1 336 0 2420 59 0 0 chr6 145083267 145083557 -37331685 - AluY SINE Alu -21 290 1 24 0 0 0 chr6 145084608 145084632 -37330610 + AT_rich Low_complexity Low_complexity 1 24 0 261 57 0 0 chr6 145084840 145084875 -37330367 + (CA)n Simple_repeat Simple_repeat 1 35 0 2088 226 83 17 chr6 145085955 145086486 -37328756 + MLT1F1 LTR MaLR 1 566 -1 402 244 0 0 chr6 145086811 145086901 -37328341 - L1MC4 LINE L1 -1 8041 7952 200 216 39 20 chr6 145088260 145088311 -37326931 + L2 LINE L2 3262 3313 0 340 287 11 0 chr6 145089380 145089474 -37325768 - L2 LINE L2 -1 3271 3177 481 249 106 32 chr6 145089991 145090208 -37325034 + MIR SINE MIR 5 237 -25 215 273 112 28 chr6 145090963 145091106 -37324136 + L2 LINE L2 1731 1885 -1429 1156 29 0 0 chr6 145093203 145093339 -37321903 - AluY SINE Alu -4 307 172 912 223 50 94 chr6 145093589 145093970 -37321272 - MLT1A1 LTR MaLR 0 365 2 438 298 96 6 chr6 145094192 145094370 -37320872 + MIR SINE MIR 32 225 -37 231 195 49 6 chr6 145094509 145094673 -37320569 + (TA)n Simple_repeat Simple_repeat 2 172 0 369 236 0 0 chr6 145099253 145099325 -37315917 - L2 LINE L2 0 3313 3242 1926 78 8 4 chr6 145099521 145099777 -37315465 - AluY SINE Alu -11 300 44 2245 149 18 33 chr6 145100269 145100665 -37314577 - MLT1B LTR MaLR 0 390 1 1696 159 62 10 chr6 145101484 145101773 -37313469 - AluJo SINE Alu -8 304 1 296 235 123 0 chr6 145102029 145102110 -37313132 + MER46C DNA MER2_type 206 296 -42 304 277 0 9 chr6 145102187 145102298 -37312944 - L1MC/D LINE L1 -600 5562 5453 470 305 83 70 chr6 145102349 145102805 -37312437 - L1MC/D LINE L1 -923 5223 4762 999 193 52 0 chr6 145103200 145103392 -37311850 + MSTB1 LTR MaLR 1 202 -230 854 185 60 0 chr6 145103399 145103550 -37311692 + FRAM SINE Alu 9 168 -8 824 156 0 0 chr6 145103557 145103685 -37311557 + FLAM_C SINE Alu 1 128 -15 1460 192 87 32 chr6 145104245 145104615 -37310627 - MLT1B LTR MaLR 0 390 1 415 310 137 2 chr6 145104618 145104880 -37310362 + L2 LINE L2 2003 2336 -978 866 276 82 26 chr6 145104885 145105226 -37310016 + L2 LINE L2 1197 1556 -1758 2369 225 21 11 chr6 145105277 145105802 -37309440 - MLT1E2 LTR MaLR -96 530 1 2851 276 135 29 chr6 145105814 145107303 -37307939 + L2 LINE L2 1596 3302 -11 1499 294 66 38 chr6 145107316 145108245 -37306997 + L2 LINE L2 2345 3290 -23 222 150 0 0 chr6 145109568 145109608 -37305634 + (T)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr6 145111657 145111685 -37303557 + AT_rich Low_complexity Low_complexity 1 28 0 184 286 0 0 chr6 145112574 145112585 -37302657 - MIR SINE MIR -6 256 216 192 233 0 0 chr6 145112585 145112615 -37302627 - L2 LINE L2 -23 3249 3220 378 344 61 6 chr6 145112756 145112936 -37302306 + MIR3 SINE MIR 19 208 0 575 155 21 21 chr6 145114675 145114817 -37300425 + CT-rich Low_complexity Low_complexity 3 144 0 215 216 0 0 chr6 145114822 145114859 -37300383 + polypyrimidine Low_complexity Low_complexity 2 38 0 393 300 35 20 chr6 145115372 145115591 -37299651 + L1MC4a LINE L1 5685 5824 -297 188 122 24 0 chr6 145115845 145115886 -37299356 + T-rich Low_complexity Low_complexity 4 45 0 2189 124 0 0 chr6 145115890 145116189 -37299053 - AluSx SINE Alu -13 299 1 334 208 145 88 chr6 145116269 145116428 -37298814 + MIR3 SINE MIR 10 177 -31 203 358 83 9 chr6 145117693 145117802 -37297440 + MIR SINE MIR 24 140 -68 236 313 25 12 chr6 145117876 145117956 -37297286 - MIR SINE MIR -76 186 106 520 303 17 17 chr6 145118291 145118466 -37296776 + MIR SINE MIR 71 245 -17 1193 268 154 6 chr6 145118741 145119233 -37296009 - L1ME3 LINE L1 -278 5867 5303 24 32 0 0 chr6 145119238 145119269 -37295973 + AT_rich Low_complexity Low_complexity 1 31 0 1659 267 149 27 chr6 145119331 145120479 -37294763 - L1ME3 LINE L1 -1441 4688 3401 820 293 87 16 chr6 145120503 145121038 -37294204 - L1ME3 LINE L1 -3089 3040 2462 300 200 53 0 chr6 145121038 145121113 -37294129 - MER116 DNA Mariner 0 80 2 820 293 87 16 chr6 145121113 145121140 -37294102 - L1ME3 LINE L1 -3667 2462 2438 686 191 30 50 chr6 145121153 145121352 -37293890 + MER106A DNA MER1_type 36 230 -6 625 295 31 32 chr6 145121367 145121898 -37293344 - L1ME3 LINE L1 -3699 2430 1942 551 318 88 5 chr6 145122110 145122528 -37292714 - L1ME3 LINE L1 -4687 1623 1171 2136 62 4 0 chr6 145122528 145122801 -37292441 - L1PA5 LINE L1 0 6154 5881 1104 8 0 0 chr6 145122804 145122928 -37292314 + L1PA5 LINE L1 5751 5874 -281 439 339 116 47 chr6 145122931 145123352 -37291890 - L1ME3 LINE L1 -4973 1146 679 357 24 0 0 chr6 145123352 145123394 -37291848 + (TG)n Simple_repeat Simple_repeat 1 42 0 439 339 116 47 chr6 145123394 145123509 -37291733 - L1ME3 LINE L1 -5440 679 573 1413 84 30 5 chr6 145125161 145125364 -37289878 - L1PA12 LINE L1 0 6168 5961 2127 116 0 17 chr6 145126168 145126469 -37288773 - AluSx SINE Alu -16 296 1 225 236 69 0 chr6 145126726 145126798 -37288444 - MER116 DNA Mariner 0 80 4 644 330 101 26 chr6 145127215 145128032 -37287210 - L2 LINE L2 0 3313 2436 563 265 71 52 chr6 145128014 145128225 -37287017 + MIR SINE MIR 27 241 -21 * 411 213 21 11 chr6 145128800 145128894 -37286348 + AluY SINE Alu 200 294 -17 1658 228 49 12 chr6 145128895 145129325 -37285917 - L1ME2 LINE L1 -307 5857 5412 2393 209 57 110 chr6 145129350 145130171 -37285071 - L1ME2 LINE L1 -12 6221 5477 2305 103 0 3 chr6 145130171 145130481 -37284761 - AluSc SINE Alu 0 309 1 2393 209 57 110 chr6 145130481 145130875 -37284367 - L1ME2 LINE L1 -756 5477 5064 546 266 52 0 chr6 145130903 145131057 -37284185 - L1ME2 LINE L1 -1369 4846 4685 807 290 89 69 chr6 145131081 145132136 -37283106 - L1ME2 LINE L1 -5222 1174 99 202 48 0 95 chr6 145132403 145132445 -37282797 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 620 314 76 0 chr6 145133441 145133655 -37281587 + MIR SINE MIR 14 248 -14 292 255 64 21 chr6 145133701 145133795 -37281447 - MIR SINE MIR -42 220 123 239 254 123 53 chr6 145137005 145137119 -37278123 - L2 LINE L2 -2 3270 3149 385 345 123 28 chr6 145137673 145138070 -37277172 + L1MC/D LINE L1 5314 5748 -2060 292 329 39 16 chr6 145138212 145138348 -37276894 - MIR SINE MIR -57 151 14 225 0 0 0 chr6 145138408 145138433 -37276809 + (T)n Simple_repeat Simple_repeat 1 25 0 29 28 0 0 chr6 145138935 145138971 -37276271 + AT_rich Low_complexity Low_complexity 1 36 0 433 204 54 41 chr6 145139690 145139837 -37275405 - MER39 LTR ERV1 0 707 559 2323 64 0 4 chr6 145139895 145140176 -37275066 - AluY SINE Alu -30 281 2 704 224 41 76 chr6 145140176 145140461 -37274781 - MER39 LTR ERV1 -166 541 267 242 235 104 43 chr6 145140436 145140551 -37274691 - LTR48B LTR ERV1 -519 125 4 * 2233 184 4 4 chr6 145140997 145141448 -37273794 - L1 LINE L1 -1314 4832 4382 * 3404 147 10 10 chr6 145141442 145142230 -37273012 + L1PA16 LINE L1 5009 5791 -375 564 211 0 0 chr6 145142230 145142382 -37272860 + (TA)n Simple_repeat Simple_repeat 1 152 0 2286 134 5 16 chr6 145142384 145142756 -37272486 + L1PA16 LINE L1 5782 6149 -17 1086 158 65 86 chr6 145143172 145143463 -37271779 + MER33 DNA MER1_type 40 324 0 311 309 81 42 chr6 145143735 145143815 -37271427 - L2 LINE L2 -484 2830 2755 2296 108 33 25 chr6 145143815 145144176 -37271066 - THE1B LTR MaLR 0 364 1 311 309 81 42 chr6 145144176 145144454 -37270788 - L2 LINE L2 -559 2755 2458 348 83 0 0 chr6 145145726 145145774 -37269468 + (CA)n Simple_repeat Simple_repeat 1 48 0 1725 90 8 0 chr6 145145993 145146248 -37268994 + L1MA1 LINE L1 6046 6302 0 209 245 116 54 chr6 145146425 145146572 -37268670 - MIR SINE MIR -73 189 34 319 257 162 71 chr6 145146763 145146973 -37268269 - MIR SINE MIR -22 240 12 243 196 0 20 chr6 145146998 145147057 -37268185 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 210 309 131 12 chr6 145147222 145147306 -37267936 - L2 LINE L2 -10 3262 3169 436 292 28 34 chr6 145147540 145147718 -37267524 + MER69A DNA AcHobo 1 177 0 27 29 0 0 chr6 145148149 145148183 -37267059 + AT_rich Low_complexity Low_complexity 1 34 0 2202 102 3 10 chr6 145148234 145148529 -37266713 + AluSq SINE Alu 1 293 -20 629 120 27 0 chr6 145148529 145148758 -37266484 + (TA)n Simple_repeat Simple_repeat 1 235 0 299 150 26 9 chr6 145148787 145148900 -37266342 + (TA)n Simple_repeat Simple_repeat 2 116 0 305 226 78 29 chr6 145148906 145149008 -37266234 - L1MC4 LINE L1 -1323 6719 6613 * 308 283 9 47 chr6 145148919 145149025 -37266217 + L1MC4 LINE L1 6613 6714 -1328 325 306 27 27 chr6 145149308 145149419 -37265823 - L2 LINE L2 0 3313 3203 225 303 24 25 chr6 145151848 145151952 -37263290 - MIR SINE MIR -94 114 5 24 32 0 0 chr6 145152656 145152687 -37262555 + AT_rich Low_complexity Low_complexity 1 31 0 230 298 44 35 chr6 145154153 145154267 -37260975 + L2 LINE L2 3192 3306 -7 377 267 20 50 chr6 145154667 145154768 -37260474 - L2 LINE L2 0 3272 3175 262 316 103 8 chr6 145155345 145155462 -37259780 + LTR67 LTR ERVL 379 506 -51 27 0 0 0 chr6 145156086 145156113 -37259129 + AT_rich Low_complexity Low_complexity 1 27 0 3180 132 15 43 chr6 145156151 145156750 -37258492 - L1MA8 LINE L1 -7 6284 5703 392 303 90 19 chr6 145157020 145157175 -37258067 - MIR SINE MIR -76 186 21 255 267 39 106 chr6 145158990 145159170 -37256072 - MIR SINE MIR -75 187 20 29 90 0 0 chr6 145160004 145160082 -37255160 + AT_rich Low_complexity Low_complexity 1 78 0 778 309 30 10 chr6 145160191 145160605 -37254637 - L1ME LINE L1 -510 5660 5238 188 304 60 95 chr6 145161880 145162048 -37253194 - MIR SINE MIR -95 167 6 24 32 0 0 chr6 145162099 145162130 -37253112 + AT_rich Low_complexity Low_complexity 1 31 0 609 83 0 0 chr6 145162633 145162717 -37252525 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 423 189 42 21 chr6 145162825 145162920 -37252322 - MIR SINE MIR -65 197 101 259 265 12 48 chr6 145163315 145163398 -37251844 - MIR SINE MIR -1 261 182 239 296 40 71 chr6 145165767 145165922 -37249320 + MIR SINE MIR 44 192 -70 310 250 100 85 chr6 145167184 145167384 -37247858 + MIR SINE MIR 60 262 0 282 263 60 124 chr6 145167884 145168101 -37247141 + L2 LINE L2 3107 3309 -4 264 298 48 77 chr6 145168328 145168432 -37246810 - L2 LINE L2 -10 3262 3162 213 365 182 13 chr6 145168901 145169060 -37246182 - L2 LINE L2 -5 3267 3082 188 382 0 0 chr6 145169662 145169738 -37245504 - L2 LINE L2 -915 2399 2324 386 283 85 33 chr6 145170003 145170215 -37245027 - L2 LINE L2 -1232 2082 1860 1859 155 10 13 chr6 145170286 145170596 -37244646 + AluJo SINE Alu 1 309 -3 468 128 20 20 chr6 145170600 145170702 -37244540 + GA-rich Low_complexity Low_complexity 3 104 0 2034 109 4 4 chr6 145171748 145172023 -37243219 + AluSx SINE Alu 10 284 -28 1408 202 0 0 chr6 145173575 145173822 -37241420 - AluJb SINE Alu -24 288 42 740 256 125 22 chr6 145174392 145174713 -37240529 - L1ME3 LINE L1 -1 6161 5808 244 327 0 0 chr6 145174725 145174777 -37240465 + MER58B DNA MER1_type 1 52 -289 * 778 208 19 13 chr6 145174773 145174927 -37240315 + MER58B DNA MER1_type 181 335 -6 535 208 87 58 chr6 145174943 145175038 -37240204 - L1ME3 LINE L1 -469 5701 5597 531 45 0 0 chr6 145175038 145175104 -37240138 + (TG)n Simple_repeat Simple_repeat 2 67 0 535 208 87 58 chr6 145175104 145175181 -37240061 - L1ME3 LINE L1 -573 5597 5524 1459 168 88 3 chr6 145175642 145175961 -37239281 + L1MC1 LINE L1 5991 6323 -21 299 148 11 45 chr6 145177374 145177462 -37237780 + L1ME4a LINE L1 6035 6119 -2 2212 112 3 3 chr6 145177888 145178191 -37237051 - AluSx SINE Alu -6 306 4 646 279 74 60 chr6 145178504 145178654 -37236588 - L2 LINE L2 -46 3267 3121 2055 119 4 0 chr6 145178654 145178959 -37236283 + AluSq SINE Alu 6 311 0 646 279 74 60 chr6 145178959 145179227 -37236015 - L2 LINE L2 -192 3121 2842 2466 107 37 8 chr6 145179227 145179581 -37235661 - THE1B LTR MaLR 0 364 1 646 279 74 60 chr6 145179581 145179779 -37235463 - L2 LINE L2 -471 2842 2648 200 224 105 0 chr6 145180297 145180373 -37234869 + MER91C DNA MER1_type 25 108 -32 185 371 0 14 chr6 145180643 145180713 -37234529 - L2 LINE L2 -1 3271 3203 676 216 180 40 chr6 145181976 145182304 -37232938 - L2 LINE L2 -862 2452 2079 305 274 73 55 chr6 145182995 145183159 -37232083 + MIR SINE MIR 18 184 -78 225 0 0 0 chr6 145183167 145183192 -37232050 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 32 0 0 chr6 145185153 145185184 -37230058 + AT_rich Low_complexity Low_complexity 1 31 0 896 281 169 6 chr6 145185274 145185623 -37229619 - L2 LINE L2 0 3313 2908 809 287 96 39 chr6 145185625 145186687 -37228555 - L1MEc LINE L1 -2959 3170 2086 23 0 0 0 chr6 145186800 145186823 -37228419 + AT_rich Low_complexity Low_complexity 1 23 0 352 306 78 32 chr6 145187043 145187327 -37227915 - L1MEc LINE L1 -824 1666 1206 665 311 104 15 chr6 145187328 145187723 -37227519 - LTR16B LTR ERVL 0 464 35 433 255 46 58 chr6 145187846 145187970 -37227272 - L1MEc LINE L1 -4902 1217 1093 2210 95 0 7 chr6 145187970 145188266 -37226976 + AluSg SINE Alu 1 294 -16 433 255 46 58 chr6 145188266 145188467 -37226775 - L1MEc LINE L1 -5026 1093 896 200 222 0 0 chr6 145188633 145188678 -37226564 + T-rich Low_complexity Low_complexity 1 45 0 743 263 125 54 chr6 145189050 145189131 -37226111 - LTR16C LTR ERVL -2 489 415 195 69 0 0 chr6 145189131 145189160 -37226082 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 743 263 125 54 chr6 145189160 145189469 -37225773 - LTR16C LTR ERVL -76 415 71 287 336 70 18 chr6 145189922 145190252 -37224990 - L1MC/D LINE L1 -2087 5721 5375 345 294 93 20 chr6 145190299 145190503 -37224739 - L1MC/D LINE L1 -844 5302 5084 22 35 0 0 chr6 145190504 145190533 -37224709 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 145190630 145190654 -37224588 + AT_rich Low_complexity Low_complexity 1 24 0 2182 99 0 40 chr6 145192609 145192913 -37222329 + AluSc SINE Alu 1 292 -17 585 315 147 18 chr6 145194191 145194524 -37220718 - L3 LINE CR1 -111 1466 1091 203 296 19 0 chr6 145195006 145195060 -37220182 - L2 LINE L2 -5 3267 3213 329 350 29 7 chr6 145196240 145196380 -37218862 - MIR3 SINE MIR -1 207 65 213 74 37 37 chr6 145196683 145196737 -37218505 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 195 364 0 12 chr6 145197748 145197771 -37217471 - L2 LINE L2 -5 3287 3265 6077 93 32 48 chr6 145197771 145198698 -37216544 - L1PB2 LINE L1 0 6151 5219 195 364 0 12 chr6 145198698 145198751 -37216491 - L2 LINE L2 -27 3265 3194 222 383 54 20 chr6 145199460 145199609 -37215633 - MIR SINE MIR -12 250 97 * 349 261 73 40 chr6 145199588 145199747 -37215495 - MIR SINE MIR -38 170 2 38 39 0 0 chr6 145200035 145200087 -37215155 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr6 145200186 145200216 -37215026 + AT_rich Low_complexity Low_complexity 1 30 0 621 150 124 0 chr6 145200707 145200820 -37214422 - FLAM_C SINE Alu -3 130 4 2329 94 13 0 chr6 145200834 145201132 -37214110 - AluSx SINE Alu -8 304 3 2357 87 13 3 chr6 145201144 145201444 -37213798 - AluSx SINE Alu -7 305 3 380 335 24 41 chr6 145202965 145203135 -37212107 - MER5B DNA MER1_type -5 173 7 1715 47 7 8 chr6 145204427 145204465 -37210777 + L1P1 LINE L1 5455 5492 -652 3751 18 7 2 chr6 145204465 145204907 -37210335 - L1PA4 LINE L1 -2 6153 5710 1715 47 7 8 chr6 145204907 145205095 -37210147 + L1PA4 LINE L1 5492 5680 -464 22 35 0 0 chr6 145206418 145206447 -37208795 + AT_rich Low_complexity Low_complexity 1 29 0 662 272 47 55 chr6 145207905 145208140 -37207102 - MIR SINE MIR -8 254 22 319 316 99 75 chr6 145208201 145208616 -37206626 + L2 LINE L2 2843 3267 -5 270 56 0 0 chr6 145208657 145208693 -37206549 + (TG)n Simple_repeat Simple_repeat 2 37 0 318 325 91 35 chr6 145209183 145209580 -37205662 - MLT1J LTR MaLR -50 461 43 21 0 0 0 chr6 145209797 145209818 -37205424 + AT_rich Low_complexity Low_complexity 1 21 0 418 249 70 42 chr6 145210102 145210294 -37204948 - L1ME LINE L1 -349 5772 5572 2500 101 25 0 chr6 145210294 145210649 -37204593 + THE1B LTR MaLR 1 364 0 418 249 70 42 chr6 145210649 145210669 -37204573 - L1ME LINE L1 -549 5572 5554 224 229 0 0 chr6 145210720 145210768 -37204474 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 210 107 54 0 chr6 145210786 145210842 -37204400 + (TA)n Simple_repeat Simple_repeat 2 60 0 237 291 45 56 chr6 145211173 145211352 -37203890 - HAL1b LINE L1 -741 607 431 21 0 0 0 chr6 145211571 145211592 -37203650 + AT_rich Low_complexity Low_complexity 1 21 0 407 276 172 12 chr6 145213266 145213429 -37201813 + MIR3 SINE MIR 13 201 -7 750 253 28 6 chr6 145214256 145214434 -37200808 - MIR SINE MIR -75 187 6 460 288 77 29 chr6 145214594 145214764 -37200478 - MIR SINE MIR -36 226 49 207 321 73 46 chr6 145214960 145215069 -37200173 + L3 LINE CR1 1029 1140 -437 912 211 6 17 chr6 145216337 145216517 -37198725 + MER45A DNA AcHobo 1 178 0 390 42 0 0 chr6 145216726 145216774 -37198468 + (TG)n Simple_repeat Simple_repeat 1 48 0 237 33 0 0 chr6 145218200 145218230 -37197012 + (T)n Simple_repeat Simple_repeat 1 30 0 552 324 159 8 chr6 145218567 145218937 -37196305 - L1ME LINE L1 -5625 445 20 226 241 79 68 chr6 145218956 145219234 -37196008 + L1ME3A LINE L1 4258 4538 -1608 754 281 117 42 chr6 145219271 145219482 -37195760 + L1ME3A LINE L1 5320 5514 -656 2026 115 7 20 chr6 145219482 145219786 -37195456 - AluSp SINE Alu -13 300 1 754 281 117 42 chr6 145219786 145220172 -37195070 + L1ME3A LINE L1 5514 5962 -208 1667 143 36 0 chr6 145220747 145220999 -37194243 + AluSx SINE Alu 22 282 -30 248 0 31 0 chr6 145221002 145221034 -37194208 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 35 41 0 0 chr6 145221054 145221103 -37194139 + AT_rich Low_complexity Low_complexity 1 49 0 266 301 110 14 chr6 145221274 145221420 -37193822 + LTR67 LTR ERVL 391 550 -7 195 327 140 13 chr6 145221432 145221582 -37193660 - L2 LINE L2 -978 2336 2168 1797 168 38 0 chr6 145221815 145222154 -37193088 - L1MC1 LINE L1 -1 6332 5981 428 229 191 0 chr6 145223103 145223234 -37192008 + MER33 DNA MER1_type 1 156 -168 1484 161 93 37 chr6 145223608 145223930 -37191312 - MER2 DNA MER2_type 0 345 6 494 251 132 18 chr6 145224173 145224298 -37190944 - MIR SINE MIR -57 205 55 416 213 56 0 chr6 145224298 145224406 -37190836 + MER81 DNA DNA 1 114 0 494 251 132 18 chr6 145224406 145224447 -37190795 - MIR SINE MIR -207 55 20 539 255 41 94 chr6 145224456 145224723 -37190519 - MIR SINE MIR 0 262 10 878 237 93 4 chr6 145225601 145225879 -37189363 - L1ME1 LINE L1 -3 6163 5861 2520 46 0 10 chr6 145225879 145226185 -37189057 - AluY SINE Alu -4 307 5 180 53 79 0 chr6 145278327 145278365 -37136877 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 180 111 0 0 chr6 145278401 145278428 -37136814 + (CA)n Simple_repeat Simple_repeat 1 27 0 225 229 82 0 chr6 145278439 145278500 -37136742 + tRNA-Ala-GCG tRNA tRNA 1 66 -9 1434 245 56 20 chr6 145278868 145279407 -37135835 + L1MC2 LINE L1 5408 5965 -379 182 174 22 0 chr6 145281091 145281137 -37134105 + GA-rich Low_complexity Low_complexity 4 50 0 422 97 194 10 chr6 145283270 145283373 -37131869 + LTR9B LTR ERV1 445 566 -78 30 45 0 0 chr6 145285028 145285072 -37130170 + AT_rich Low_complexity Low_complexity 1 44 0 1289 153 3 62 chr6 145285674 145285981 -37129261 + L1MB8 LINE L1 5881 6169 -9 376 206 87 0 chr6 145288266 145288358 -37126884 + MER5B DNA MER1_type 1 100 -78 226 352 31 23 chr6 145289451 145289579 -37125663 + L3 LINE CR1 83 211 -1366 2217 85 7 0 chr6 145289603 145289910 -37125332 + AluSq SINE Alu 1 309 0 1587 173 13 13 chr6 145289913 145290231 -37125011 + L1MA9 LINE L1 5995 6312 0 396 255 66 0 chr6 145290941 145291047 -37124195 + L2 LINE L2 2658 2770 -544 1373 221 53 9 chr6 145291083 145291422 -37123820 - MLT1A1 LTR MaLR -5 360 7 1426 216 45 77 chr6 145291441 145291951 -37123291 + L2 LINE L2 2820 3313 0 336 241 85 28 chr6 145292158 145292299 -37122943 - MER103 DNA DNA -1 165 17 569 288 102 30 chr6 145292803 145293039 -37122203 + MIR SINE MIR 10 262 0 32 43 0 0 chr6 145293754 145293800 -37121442 + AT_rich Low_complexity Low_complexity 1 46 0 210 105 0 0 chr6 145293984 145294022 -37121220 + (TC)n Simple_repeat Simple_repeat 1 38 0 1190 325 121 47 chr6 145294037 145295015 -37120227 + L2 LINE L2 1915 2964 -350 318 195 11 46 chr6 145295026 145295113 -37120129 + MER94 DNA DNA 2 85 -49 214 351 11 21 chr6 145295117 145295211 -37120031 + L2 LINE L2 2980 3072 -200 208 311 33 0 chr6 145295309 145295370 -37119872 + polypurine Low_complexity Low_complexity 2 64 0 884 70 86 0 chr6 145296314 145296442 -37118800 + MER85 DNA T2_type 1 139 0 524 242 23 15 chr6 145297756 145297888 -37117354 - MIR SINE MIR -56 206 74 252 295 0 0 chr6 145298141 145298202 -37117040 + L2 LINE L2 3252 3312 -1 275 241 147 26 chr6 145298963 145299079 -37116163 + MIR SINE MIR 9 138 -124 207 224 184 26 chr6 145299303 145299379 -37115863 - MIR SINE MIR -44 218 131 1220 106 0 62 chr6 145299379 145299605 -37115637 - L1MA9 LINE L1 0 6312 6101 482 148 23 0 chr6 145299652 145299740 -37115502 - L1MA9 LINE L1 -204 6108 6019 391 305 80 28 chr6 145300600 145300813 -37114429 + L2 LINE L2 2544 2767 -547 446 299 188 36 chr6 145301906 145302130 -37113112 + L2 LINE L2 3015 3272 0 1735 180 17 14 chr6 145304027 145304321 -37110921 - AluJo SINE Alu -13 299 5 3913 124 142 46 chr6 145305228 145305598 -37109644 - MER4D LTR ERV1 0 903 570 2599 46 0 3 chr6 145305598 145305904 -37109338 - AluY SINE Alu -6 305 1 3913 124 142 46 chr6 145305904 145306357 -37108885 - MER4D LTR ERV1 -333 570 1 22 70 0 0 chr6 145307790 145307833 -37107409 + AT_rich Low_complexity Low_complexity 1 43 0 197 329 41 0 chr6 145308750 145308823 -37106419 - L2 LINE L2 -2 3311 3236 404 333 0 0 chr6 145308902 145309004 -37106238 - L2 LINE L2 -2 3270 3169 773 174 0 0 chr6 145309166 145309298 -37105944 - FLAM_C SINE Alu -11 132 1 1871 174 62 3 chr6 145310180 145310548 -37104694 - MLT1B LTR MaLR 0 390 1 1355 135 17 48 chr6 145310822 145311052 -37104190 + AluSg/x SINE Alu 73 295 -17 4232 127 18 1 chr6 145311097 145311780 -37103462 - L1MA3 LINE L1 0 6305 5612 319 281 168 54 chr6 145312765 145312932 -37102310 + HAL1 LINE L1 7 192 -2315 2256 101 3 7 chr6 145312997 145313294 -37101948 + AluSq SINE Alu 1 296 -17 484 297 18 40 chr6 145313322 145313544 -37101698 + HAL1 LINE L1 272 488 -2019 343 232 28 85 chr6 145313782 145313993 -37101249 + HAL1 LINE L1 1617 1815 -692 344 180 194 28 chr6 145314151 145314368 -37100874 + HAL1 LINE L1 2074 2507 0 225 224 17 17 chr6 145315842 145315900 -37099342 - Tigger5 DNA MER2_type 0 2323 2266 * 327 175 0 0 chr6 145315896 145315953 -37099289 + Tigger5 DNA MER2_type 2261 2317 -6 368 241 0 0 chr6 145315955 145316034 -37099208 - Tigger5 DNA MER2_type -2244 79 1 962 197 56 0 chr6 145316160 145316358 -37098884 - MER3 DNA MER1_type 0 209 1 180 0 0 0 chr6 145316535 145316555 -37098687 + (A)n Simple_repeat Simple_repeat 1 20 0 440 331 88 49 chr6 145317515 145317799 -37097443 - L2 LINE L2 0 3272 2978 654 276 32 16 chr6 145318701 145318886 -37096356 - MER5A DNA MER1_type 0 189 2 15263 71 7 0 chr6 145319993 145322811 -37092431 - L1PA6 LINE L1 -1 6153 3322 330 275 80 29 chr6 145323316 145323454 -37091788 + MIR SINE MIR 98 242 -20 293 273 0 0 chr6 145323548 145323614 -37091628 - MIR SINE MIR 0 262 197 659 316 72 8 chr6 145326561 145326798 -37088444 + MIR SINE MIR 1 252 -10 252 293 19 57 chr6 145326831 145326937 -37088305 - MIR SINE MIR -79 183 82 337 302 0 12 chr6 145327836 145327922 -37087320 + MIR SINE MIR 108 192 -70 217 313 18 80 chr6 145328657 145328769 -37086473 - L2 LINE L2 -10 3262 3158 420 292 87 6 chr6 145328822 145328983 -37086259 - MIR SINE MIR -81 181 8 2417 98 0 0 chr6 145329063 145329368 -37085874 + AluSc SINE Alu 1 305 -4 1464 153 52 12 chr6 145330283 145330531 -37084711 + AluJo SINE Alu 1 258 -54 245 229 229 68 chr6 145330648 145330766 -37084476 - L3b LINE CR1 -96 1487 1351 189 0 0 0 chr6 145331929 145331950 -37083292 + (T)n Simple_repeat Simple_repeat 1 21 0 728 232 25 84 chr6 145333508 145333745 -37081497 + MER58A DNA MER1_type 1 223 -1 539 213 57 0 chr6 145334091 145334213 -37081029 - MER94 DNA DNA 0 134 6 1034 105 48 70 chr6 145334277 145334505 -37080737 + L1MA8 LINE L1 6047 6269 -22 328 281 79 0 chr6 145336257 145336346 -37078896 - L2 LINE L2 -23 3249 3154 261 328 0 15 chr6 145336471 145336538 -37078704 - L2 LINE L2 -178 3094 3029 351 325 102 5 chr6 145337794 145338000 -37077242 - L2 LINE L2 -868 2446 2221 304 296 237 0 chr6 145339140 145339326 -37075916 + MIR SINE MIR 20 249 -13 203 273 91 0 chr6 145339544 145339599 -37075643 + MER5B DNA MER1_type 84 143 -35 571 246 120 11 chr6 145339689 145339864 -37075378 - MIR SINE MIR -54 208 15 28 48 0 0 chr6 145339966 145340008 -37075234 + AT_rich Low_complexity Low_complexity 1 42 0 280 309 157 10 chr6 145341138 145341342 -37073900 + MIR SINE MIR 29 262 0 278 349 155 22 chr6 145341545 145341900 -37073342 - L2 LINE L2 -1556 1758 1357 234 239 75 30 chr6 145342768 145342835 -37072407 - L2 LINE L2 -17 3255 3186 2421 65 0 0 chr6 145343218 145343511 -37071731 - AluY SINE Alu -18 293 1 344 206 123 90 chr6 145343865 145344020 -37071222 - MIR SINE MIR -5 257 98 260 323 65 0 chr6 145344180 145344273 -37070969 - L2 LINE L2 0 3313 3215 1282 136 59 36 chr6 145344300 145344521 -37070721 + AluJo SINE Alu 6 231 -81 28 0 0 0 chr6 145345433 145345461 -37069781 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr6 145345544 145345586 -37069656 + AT_rich Low_complexity Low_complexity 1 42 0 489 242 42 25 chr6 145345849 145345969 -37069273 + L2 LINE L2 3192 3313 0 1435 181 44 24 chr6 145346511 145346809 -37068433 + AluJo SINE Alu 3 306 -6 1016 220 68 56 chr6 145347073 145347468 -37067774 - MER20B DNA MER1_type -6 777 378 4178 109 18 0 chr6 145347548 145348173 -37067069 + L1PB1 LINE L1 5514 6149 -2 260 45 0 45 chr6 145348209 145348253 -37066989 + L1MA3 LINE L1 6261 6302 -3 840 278 14 24 chr6 145348265 145348553 -37066689 - MER20B DNA MER1_type -489 294 10 21 36 0 0 chr6 145348802 145348830 -37066412 + AT_rich Low_complexity Low_complexity 1 28 0 368 271 107 16 chr6 145349845 145349967 -37065275 - L2 LINE L2 -47 3225 3093 334 336 35 0 chr6 145350775 145350888 -37064354 + L2 LINE L2 3142 3258 -14 264 287 43 32 chr6 145351882 145351912 -37063330 + L2 LINE L2 3208 3236 -77 2239 114 45 31 chr6 145351912 145352270 -37062972 - THE1B LTR MaLR 0 364 2 264 287 43 32 chr6 145352270 145352333 -37062909 + L2 LINE L2 3236 3302 -11 225 0 0 0 chr6 145352711 145352736 -37062506 + (T)n Simple_repeat Simple_repeat 1 25 0 1355 141 8 8 chr6 145353245 145353486 -37061756 - L1MB1 LINE L1 0 6168 5928 416 345 26 26 chr6 145353633 145353827 -37061415 + MIR SINE MIR 21 214 -48 615 0 0 0 chr6 145354376 145354472 -37060770 + L1PA3 LINE L1 6070 6165 0 207 0 0 0 chr6 145355951 145355974 -37059268 + (A)n Simple_repeat Simple_repeat 1 23 0 207 283 10 20 chr6 145356480 145356579 -37058663 + T-rich Low_complexity Low_complexity 3 100 0 21 82 0 0 chr6 145357169 145357218 -37058024 + AT_rich Low_complexity Low_complexity 1 49 0 1315 76 28 19 chr6 145357725 145357936 -37057306 + L1MA2 LINE L1 6092 6304 0 24 32 0 0 chr6 145357957 145357988 -37057254 + AT_rich Low_complexity Low_complexity 1 31 0 842 218 12 18 chr6 145358325 145358495 -37056747 + FAM SINE Alu 1 169 -6 26883 35 5 0 chr6 145360185 145364413 -37050829 - L1PA4 LINE L1 0 6155 1905 519 165 52 10 chr6 145364464 145364561 -37050681 + AluJb SINE Alu 11 111 -201 30 0 0 0 chr6 145364567 145364597 -37050645 + AT_rich Low_complexity Low_complexity 1 30 0 586 226 12 18 chr6 145364605 145364769 -37050473 + MER96B DNA MER1_type? 10 172 -245 391 280 17 25 chr6 145365320 145365438 -37049804 + L2 LINE L2 1717 1833 -1481 3165 232 58 68 chr6 145365448 145366777 -37048465 - L1MC4 LINE L1 0 8042 6728 1114 286 119 25 chr6 145366813 145367250 -37047992 + L2 LINE L2 1924 2401 -913 1476 173 102 7 chr6 145368107 145368390 -37046852 + AluSg SINE Alu 1 310 0 277 325 91 24 chr6 145368753 145368962 -37046280 + MIR SINE MIR 13 235 -27 24 0 0 0 chr6 145369055 145369079 -37046163 + AT_rich Low_complexity Low_complexity 1 24 0 840 198 6 12 chr6 145369430 145369602 -37045640 + FRAM SINE Alu 1 40 0 313 216 0 18 chr6 145369603 145369714 -37045528 + GA-rich Low_complexity Low_complexity 2 110 0 616 205 72 72 chr6 145371259 145371522 -37043720 - LTR37A LTR ERV1 0 426 164 1447 144 11 11 chr6 145371526 145371797 -37043445 - L1 LINE L1 -1094 5052 4782 183 80 0 0 chr6 145372072 145372097 -37043145 + (TG)n Simple_repeat Simple_repeat 2 26 0 2371 144 13 49 chr6 145372662 145372902 -37042340 - Tigger2a DNA MER2_type -2274 434 215 1872 82 23 23 chr6 145372902 145373182 -37042060 + AluSg SINE Alu 27 306 0 2371 144 13 49 chr6 145373182 145373390 -37041852 - Tigger2a DNA MER2_type -2493 215 1 22 0 0 0 chr6 145373398 145373420 -37041822 + AT_rich Low_complexity Low_complexity 1 22 0 583 261 109 22 chr6 145373559 145373789 -37041453 - MIR SINE MIR 0 262 13 559 234 58 29 chr6 145374045 145374216 -37041026 - MIR SINE MIR -22 240 65 360 0 0 0 chr6 145377379 145377419 -37037823 + (TG)n Simple_repeat Simple_repeat 2 41 0 1678 178 11 0 chr6 145377424 145377693 -37037549 - AluJo SINE Alu -30 282 11 711 308 28 16 chr6 145378156 145378409 -37036833 - MIR SINE MIR -5 257 2 2198 116 10 0 chr6 145378515 145378818 -37036424 + AluSx SINE Alu 1 306 -6 201 382 78 25 chr6 145381718 145382037 -37033205 + L2 LINE L2 2579 2914 -400 245 283 231 23 chr6 145382045 145382218 -37033024 - L2 LINE L2 -1 3312 3104 187 277 181 0 chr6 145383017 145383100 -37032142 - L2 LINE L2 -7 3265 3168 687 226 124 37 chr6 145383123 145383340 -37031902 + Charlie2 DNA MER1_type 6 241 -2621 2457 116 16 5 chr6 145383385 145383756 -37031486 - THE1C LTR MaLR 0 375 1 9773 110 37 9 chr6 145383756 145385278 -37029964 - THE1C-int LTR MaLR 0 1580 17 2688 102 8 0 chr6 145385284 145385656 -37029586 - THE1C LTR MaLR 0 375 1 1450 222 48 42 chr6 145385709 145386299 -37028943 + Charlie2 DNA MER1_type 2230 2822 -40 1228 269 19 49 chr6 145386695 145387167 -37028075 - MLT1J LTR MaLR -53 458 1 1092 245 191 52 chr6 145387315 145387574 -37027668 + L2 LINE L2 2296 2517 -796 2710 129 29 2 chr6 145387574 145387991 -37027251 - MSTA LTR MaLR 0 428 1 1092 245 191 52 chr6 145387991 145388515 -37026727 + L2 LINE L2 2517 3216 -97 2137 112 72 26 chr6 145388515 145388863 -37026379 + THE1B LTR MaLR 1 364 0 1092 245 191 52 chr6 145388863 145388971 -37026271 + L2 LINE L2 3216 3308 -5 24 0 0 0 chr6 145389364 145389388 -37025854 + AT_rich Low_complexity Low_complexity 1 24 0 422 255 41 10 chr6 145389626 145389724 -37025518 + L2 LINE L2 3198 3298 -15 225 291 265 0 chr6 145390277 145390428 -37024814 + MIR SINE MIR 65 255 -7 226 240 13 53 chr6 145390644 145390719 -37024523 - L3 LINE CR1 -871 706 635 1580 149 14 10 chr6 145391493 145391782 -37023460 - L1MB3 LINE L1 0 6183 5894 2158 128 101 25 chr6 145391795 145392193 -37023049 - MSTC LTR MaLR 0 428 1 7525 31 9 0 chr6 145392853 145394046 -37021196 - L1PA3 LINE L1 0 6155 4959 5157 32 1 0 chr6 145394046 145394697 -37020545 + L1PA3 LINE L1 4317 4968 -1178 297 302 20 16 chr6 145396110 145396275 -37018967 + GA-rich Low_complexity Low_complexity 1 165 0 285 256 0 0 chr6 145396600 145396678 -37018564 - MER116 DNA Mariner 0 80 3 226 333 0 10 chr6 145396684 145396780 -37018462 - L1ME4a LINE L1 -70 6051 5957 437 283 44 113 chr6 145396986 145397420 -37017822 - L1ME4a LINE L1 -460 5661 5258 21 0 0 0 chr6 145397467 145397488 -37017754 + AT_rich Low_complexity Low_complexity 1 21 0 242 287 68 54 chr6 145397697 145397993 -37017249 - L1ME LINE L1 -312 5809 5510 381 253 57 14 chr6 145398056 145398223 -37017019 - L1ME LINE L1 -910 5449 5308 838 145 0 15 chr6 145398402 145398533 -37016709 + AluSq/x SINE Alu 6 134 -178 1303 254 97 20 chr6 145398536 145399284 -37015958 + L1ME3A LINE L1 5149 5951 -219 372 268 71 60 chr6 145399355 145399538 -37015704 + L1ME3A LINE L1 5969 6153 -17 311 308 75 58 chr6 145399579 145399819 -37015423 - L1ME LINE L1 -1158 4988 4745 1187 148 0 0 chr6 145400411 145400587 -37014655 + FRAM SINE Alu 1 176 0 323 325 0 0 chr6 145403583 145403709 -37011533 + L3b LINE CR1 1302 1427 -156 2182 113 7 0 chr6 145404008 145404308 -37010934 + AluSx SINE Alu 1 302 -10 2518 73 0 10 chr6 145404528 145404842 -37010400 + AluY SINE Alu 1 311 0 566 212 229 0 chr6 145405616 145405786 -37009456 - MER3 DNA MER1_type 0 209 1 792 189 10 138 chr6 145406497 145406702 -37008540 + MIR SINE MIR 8 167 -95 1674 145 7 48 chr6 145406702 145406991 -37008251 + AluJo SINE Alu 14 290 -22 792 189 10 138 chr6 145406991 145407076 -37008166 + MIR SINE MIR 167 261 -1 486 138 0 25 chr6 145407235 145407315 -37007927 - MADE1 DNA Mariner 0 80 3 1812 164 0 39 chr6 145407350 145407661 -37007581 + AluJo SINE Alu 1 299 -13 1902 141 0 30 chr6 145410498 145410795 -37004447 + AluJb SINE Alu 1 288 -24 216 0 0 0 chr6 145412230 145412254 -37002988 + (T)n Simple_repeat Simple_repeat 1 24 0 761 262 6 0 chr6 145412279 145412462 -37002780 - MIR SINE MIR 0 262 79 1168 93 71 11 chr6 145412601 145412783 -37002459 + AluSp SINE Alu 1 193 -120 44 35 0 0 chr6 145413537 145413595 -37001647 + AT_rich Low_complexity Low_complexity 1 58 0 34 0 0 0 chr6 145415479 145415513 -36999729 + AT_rich Low_complexity Low_complexity 1 34 0 2258 111 0 0 chr6 145415827 145416124 -36999118 + AluSc SINE Alu 1 297 -12 204 40 0 0 chr6 145416672 145416697 -36998545 + (A)n Simple_repeat Simple_repeat 1 25 0 307 224 0 0 chr6 145417544 145417602 -36997640 - L2 LINE L2 -8 3305 3248 258 303 121 71 chr6 145417772 145417855 -36997387 + MIR SINE MIR 49 126 -136 2189 104 3 14 chr6 145417855 145418152 -36997090 + AluSg SINE Alu 1 294 -16 258 303 121 71 chr6 145418152 145418266 -36996976 + MIR SINE MIR 126 256 -6 1049 172 122 115 chr6 145418601 145418897 -36996345 + AluJo SINE Alu 5 302 0 582 321 72 0 chr6 145418900 145419109 -36996133 + MIR SINE MIR 28 251 -11 1062 175 26 10 chr6 145419680 145419874 -36995368 + AluJo SINE Alu 89 285 -27 180 0 0 0 chr6 145419874 145419894 -36995348 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 868 239 25 0 chr6 145420468 145420665 -36994577 + MIR SINE MIR 45 246 -16 2116 134 0 0 chr6 145420762 145421060 -36994182 + AluSg SINE Alu 1 298 -12 2171 113 0 20 chr6 145422137 145422438 -36992804 - AluSx SINE Alu -17 295 1 1522 200 92 12 chr6 145423317 145423725 -36991517 - MLT1C LTR MaLR -1 466 17 212 169 46 15 chr6 145423749 145423814 -36991428 + (CTCA)n Simple_repeat Simple_repeat 4 70 0 453 36 0 0 chr6 145423838 145423893 -36991349 + (CA)n Simple_repeat Simple_repeat 2 56 0 357 121 0 0 chr6 145423919 145423977 -36991265 - L1MD1 LINE L1 -11 6231 6174 1762 155 32 32 chr6 145424025 145424335 -36990907 + AluJo SINE Alu 1 310 -2 695 199 18 104 chr6 145424335 145424556 -36990686 - L1MD2 LINE L1 -57 6302 6101 234 0 0 0 chr6 145424841 145424867 -36990375 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 326 336 124 50 chr6 145424867 145425165 -36990077 - L2 LINE L2 -4 3268 2949 485 325 170 48 chr6 145425321 145426642 -36988600 - L2 LINE L2 -1742 1572 91 22 80 0 0 chr6 145427439 145427489 -36987753 + AT_rich Low_complexity Low_complexity 1 50 0 191 218 0 11 chr6 145427878 145427965 -36987277 + G-rich Low_complexity Low_complexity 5 90 0 393 156 26 13 chr6 145428690 145428767 -36986475 - L1MB1 LINE L1 -12 6156 6079 1674 188 7 4 chr6 145429025 145429301 -36985941 + AluJo SINE Alu 1 277 -35 781 185 23 0 chr6 145429309 145429439 -36985803 + Tigger2 DNA MER2_type 2576 2708 -10 2450 108 73 6 chr6 145429535 145429876 -36985366 - THE1B LTR MaLR 0 364 1 211 337 189 26 chr6 145429957 145430337 -36984905 + L2 LINE L2 2826 3267 -5 29 47 0 0 chr6 145430523 145430566 -36984676 + AT_rich Low_complexity Low_complexity 1 43 0 868 127 0 96 chr6 145430566 145430723 -36984519 + FLAM_C SINE Alu 1 142 -1 2434 113 24 42 chr6 145431070 145431452 -36983790 - THE1C LTR MaLR 0 375 1 2187 113 0 22 chr6 145432094 145432412 -36982830 + AluSx SINE Alu 1 311 -1 326 271 64 72 chr6 145432750 145432924 -36982318 - MIR SINE MIR -62 146 1 301 268 0 0 chr6 145433123 145433194 -36982048 - MER81 DNA DNA -1 113 43 315 0 0 0 chr6 145435044 145435079 -36980163 + (CA)n Simple_repeat Simple_repeat 2 36 0 353 269 141 27 chr6 145435393 145435542 -36979700 - MIR SINE MIR -10 252 87 1079 173 36 27 chr6 145436273 145436498 -36978744 + AluJb SINE Alu 85 311 -1 1436 93 0 0 chr6 145436606 145436788 -36978454 + AluSg/x SINE Alu 122 303 -7 234 340 58 0 chr6 145436789 145436945 -36978297 + L1ME LINE L1 5756 5920 -201 565 122 12 0 chr6 145437016 145437098 -36978144 + AluJ/FRAM SINE Alu 218 300 -12 2211 118 0 0 chr6 145437332 145437629 -36977613 - AluSx SINE Alu -14 298 2 293 339 9 9 chr6 145437988 145438103 -36977139 + MIR SINE MIR 96 210 -52 450 0 0 0 chr6 145438397 145438447 -36976795 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2113 81 0 4 chr6 145438659 145438919 -36976323 - AluSq SINE Alu -53 260 2 662 313 137 14 chr6 145439222 145439644 -36975598 - L3 LINE CR1 -128 1449 976 229 324 14 14 chr6 145440180 145440254 -36974988 - L2 LINE L2 -43 3270 3197 2790 102 11 5 chr6 145440293 145440666 -36974576 - THE1C LTR MaLR 0 375 1 1850 164 10 0 chr6 145440741 145441040 -36974202 + AluJo SINE Alu 1 302 -10 384 315 24 0 chr6 145441339 145441466 -36973776 - MIR3 SINE MIR -65 143 14 2318 154 3 0 chr6 145441557 145441700 -36973542 - L1PB1 LINE L1 0 6151 6009 3740 138 7 31 chr6 145441700 145442510 -36972732 - L1PA8 LINE L1 -156 6016 5265 1796 105 82 149 chr6 145443168 145443237 -36972005 - THE1B LTR MaLR 0 375 303 14760 101 3 2 chr6 145443237 145443610 -36971632 + L1PA8A LINE L1 3292 3663 -2468 189 0 0 0 chr6 145443610 145443631 -36971611 + (CA)n Simple_repeat Simple_repeat 2 22 0 14760 101 3 2 chr6 145443631 145444138 -36971104 + L1PA8A LINE L1 3663 4168 -1963 2114 109 3 7 chr6 145444138 145444432 -36970810 + AluSg1 SINE Alu 1 293 -16 14760 101 3 2 chr6 145444432 145444892 -36970350 + L1PA8A LINE L1 4168 4626 -1505 2333 92 3 9 chr6 145444892 145445207 -36970035 + AluSp SINE Alu 1 313 0 14760 101 3 2 chr6 145445207 145446686 -36968556 + L1PA8A LINE L1 4626 6118 -13 186 43 0 0 chr6 145446689 145446712 -36968530 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1796 105 82 149 chr6 145446712 145446980 -36968262 - THE1B LTR MaLR -74 301 57 216 351 0 0 chr6 145447800 145447857 -36967385 + MIR SINE MIR 12 68 -194 424 172 0 0 chr6 145447860 145447924 -36967318 + AluYb8 SINE Alu 135 198 -120 395 171 31 116 chr6 145447953 145448082 -36967160 + MIR SINE MIR 57 174 -88 428 207 20 11 chr6 145448335 145448436 -36966806 - MIR3 SINE MIR -9 199 98 276 225 36 9 chr6 145449062 145449211 -36966031 + LTR16A LTR ERVL 259 441 -9 2133 149 6 25 chr6 145449486 145449848 -36965394 + MLT1A1 LTR MaLR 5 359 -6 2118 139 0 0 chr6 145450958 145451259 -36963983 + AluJb SINE Alu 1 301 -11 1659 172 59 0 chr6 145451308 145451598 -36963644 + AluJo SINE Alu 4 310 -2 240 191 237 76 chr6 145451616 145451747 -36963495 - MLT1L LTR MaLR 0 615 464 204 329 101 0 chr6 145452721 145452800 -36962442 - L2 LINE L2 0 3313 3227 213 39 0 0 chr6 145452886 145452912 -36962330 + (A)n Simple_repeat Simple_repeat 1 26 0 199 291 73 0 chr6 145453092 145453147 -36962095 + MIR SINE MIR 40 98 -110 1999 95 47 20 chr6 145453468 145453764 -36961478 - AluSx SINE Alu -8 304 1 27 29 0 0 chr6 145454717 145454751 -36960491 + AT_rich Low_complexity Low_complexity 1 34 0 2207 285 148 54 chr6 145455233 145455266 -36959976 - L2 LINE L2 -172 3141 3113 1720 136 99 0 chr6 145455266 145455539 -36959703 + AluJo SINE Alu 1 300 -12 2207 285 148 54 chr6 145455539 145456115 -36959127 - L2 LINE L2 -200 3113 2593 1975 107 41 14 chr6 145456115 145456406 -36958836 - AluSx SINE Alu -13 299 1 2207 285 148 54 chr6 145456406 145456868 -36958374 - L2 LINE L2 -720 2593 2176 2357 92 0 0 chr6 145456868 145457162 -36958080 + AluSc SINE Alu 1 294 -15 2207 285 148 54 chr6 145457162 145457716 -36957526 - L2 LINE L2 -1137 2176 1342 447 181 51 87 chr6 145458067 145458205 -36957037 + HAL1 LINE L1 48 180 -2327 558 245 118 70 chr6 145458272 145458746 -36956496 + HAL1 LINE L1 586 1082 -1425 2176 110 0 19 chr6 145458746 145459054 -36956188 + AluSg SINE Alu 1 302 -8 281 229 71 14 chr6 145459054 145459124 -36956118 + HAL1 LINE L1 1635 1708 -799 1377 121 5 0 chr6 145459240 145459455 -36955787 + L1MB1 LINE L1 5580 5795 -539 570 106 12 0 chr6 145459457 145459542 -36955700 + L1MB1 LINE L1 5864 5949 -219 812 130 26 0 chr6 145459543 145459658 -36955584 + AluJb SINE Alu 1 118 -194 1197 138 62 0 chr6 145459685 145459895 -36955347 + L1MB1 LINE L1 5935 6157 -11 270 0 0 0 chr6 145459895 145459925 -36955317 + (CA)n Simple_repeat Simple_repeat 1 30 0 682 225 78 83 chr6 145459933 145460001 -36955241 + HAL1 LINE L1 2032 2099 -408 1791 147 0 4 chr6 145460001 145460267 -36954975 + AluJb SINE Alu 1 265 -47 682 225 78 83 chr6 145460267 145460593 -36954649 + HAL1 LINE L1 2099 2424 -83 183 100 0 0 chr6 145460902 145460932 -36954310 + (GGA)n Simple_repeat Simple_repeat 2 31 0 331 230 53 7 chr6 145461541 145461693 -36953549 + (TA)n Simple_repeat Simple_repeat 2 160 0 2661 30 0 0 chr6 145462026 145462324 -36952918 + AluY SINE Alu 1 298 -13 304 136 197 0 chr6 145462553 145462619 -36952623 + Tigger3(Golem) DNA MER2_type 2818 2896 -133 2174 112 10 13 chr6 145463013 145463325 -36951917 + AluSx SINE Alu 1 311 -1 489 186 52 0 chr6 145464479 145464576 -36950666 + Tigger3b DNA MER2_type 1 102 -1129 * 5655 109 50 14 chr6 145464574 145464641 -36950601 + Tigger3b DNA MER2_type 274 337 -2691 1769 140 16 42 chr6 145464641 145464948 -36950294 + AluJb SINE Alu 1 299 -13 5655 109 50 14 chr6 145464948 145465805 -36949437 + Tigger3b DNA MER2_type 337 1231 0 313 87 0 0 chr6 145466836 145466882 -36948360 - Tigger4(Zombi) DNA MER2_type -464 2267 2222 * 945 142 55 0 chr6 145466879 145467038 -36948204 - Tigger4(Zombi) DNA MER2_type -2683 48 -2 580 224 70 7 chr6 145467047 145467190 -36948052 - MER33 DNA MER1_type -172 152 1 1924 158 3 0 chr6 145467508 145467799 -36947443 - AluJb SINE Alu -20 292 1 498 299 125 58 chr6 145468135 145468284 -36946958 + L2 LINE L2 1338 1476 -1838 2107 122 3 3 chr6 145468284 145468580 -36946662 + AluSx SINE Alu 1 296 -16 498 299 125 58 chr6 145468580 145468999 -36946243 + L2 LINE L2 1476 1944 -1370 315 330 116 33 chr6 145469061 145469337 -36945905 + L2 LINE L2 2194 2492 -822 2493 104 22 0 chr6 145469507 145469863 -36945379 + THE1B LTR MaLR 1 364 0 1372 158 9 0 chr6 145470804 145471025 -36944217 + THE1B LTR MaLR 57 279 -85 199 229 125 42 chr6 145471026 145471122 -36944120 - MIR3 SINE MIR -53 155 52 363 330 85 0 chr6 145472276 145472394 -36942848 - L2 LINE L2 0 3272 3145 493 251 139 27 chr6 145472406 145472593 -36942649 + L2 LINE L2 3101 3308 -5 202 279 0 59 chr6 145473364 145473432 -36941810 - L3 LINE CR1 -207 1370 1307 300 75 0 0 chr6 145473564 145473604 -36941638 + Alu SINE Alu 1 40 -262 255 313 107 0 chr6 145474262 145474374 -36940868 - L2 LINE L2 -976 2338 2215 2243 92 7 0 chr6 145474806 145475099 -36940143 + AluSc SINE Alu 1 295 -14 2091 115 3 0 chr6 145477194 145477480 -36937762 - AluSx SINE Alu -19 293 7 23 0 0 0 chr6 145477569 145477592 -36937650 + AT_rich Low_complexity Low_complexity 1 23 0 1693 105 129 0 chr6 145477638 145477927 -36937315 + AluSg SINE Alu 1 321 0 412 18 35 0 chr6 145479598 145479655 -36935587 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 203 286 286 22 chr6 145484061 145484243 -36930999 + MIR SINE MIR 25 254 -8 827 211 25 0 chr6 145484261 145484422 -36930820 - MIR SINE MIR -21 241 77 21 36 0 0 chr6 145484730 145484758 -36930484 + AT_rich Low_complexity Low_complexity 1 28 0 476 296 121 22 chr6 145485197 145485420 -36929822 + MIR SINE MIR 18 262 0 2119 129 0 0 chr6 145485427 145485721 -36929521 - AluSg SINE Alu -16 294 1 207 108 27 0 chr6 145492182 145492219 -36923023 + A-rich Low_complexity Low_complexity 3 40 0 315 286 163 20 chr6 145492334 145492481 -36922761 - MIR SINE MIR -67 195 28 349 326 88 0 chr6 145493803 145493950 -36921292 - MIR SINE MIR -82 180 21 222 118 0 0 chr6 145495518 145495552 -36919690 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr6 145495616 145495637 -36919605 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 145496057 145496078 -36919164 + AT_rich Low_complexity Low_complexity 1 21 0 967 72 0 43 chr6 145498740 145498878 -36916364 - FRAM SINE Alu -15 161 30 21 0 0 0 chr6 145498878 145498899 -36916343 + AT_rich Low_complexity Low_complexity 1 21 0 294 29 0 0 chr6 145500211 145500246 -36914996 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr6 145500570 145500599 -36914643 + AT_rich Low_complexity Low_complexity 1 29 0 430 199 199 15 chr6 145500751 145500887 -36914355 + MIR SINE MIR 29 189 -73 24 0 0 0 chr6 145500941 145500965 -36914277 + AT_rich Low_complexity Low_complexity 1 24 0 488 239 110 0 chr6 145503284 145503447 -36911795 + MIR SINE MIR 65 245 -17 975 185 11 28 chr6 145504233 145504411 -36910831 + FAM SINE Alu 1 175 0 234 224 0 0 chr6 145505311 145505378 -36909864 + L1MC4 LINE L1 6641 6707 -1335 204 233 70 0 chr6 145505746 145505789 -36909453 - L2 LINE L2 -15 3257 3212 392 297 182 56 chr6 145505899 145506449 -36908793 - L2 LINE L2 -25 3288 2662 180 272 0 158 chr6 145506482 145506596 -36908646 - L2 LINE L2 -794 2520 2425 187 162 0 27 chr6 145506678 145506715 -36908527 - MIR SINE MIR -154 54 19 2121 96 20 3 chr6 145507034 145507327 -36907915 + AluSx SINE Alu 1 298 -14 339 238 74 134 chr6 145507532 145507734 -36907508 + MIR SINE MIR 46 235 -27 2300 95 0 0 chr6 145507902 145508197 -36907045 + AluSx SINE Alu 1 295 -17 725 128 0 98 chr6 145508197 145508323 -36906919 + AluSg/x SINE Alu 133 247 -63 1224 157 0 18 chr6 145508323 145508546 -36906696 + AluSg/x SINE Alu 82 300 -10 1941 101 36 0 chr6 145508964 145509241 -36906001 + AluSx SINE Alu 1 287 -25 516 143 0 24 chr6 145509478 145509562 -36905680 - AluJb SINE Alu -24 288 207 213 191 43 0 chr6 145512263 145512310 -36902932 + L2 LINE L2 3223 3271 -1 24 0 0 0 chr6 145512914 145512938 -36902304 + AT_rich Low_complexity Low_complexity 1 24 0 2017 107 0 4 chr6 145512938 145513219 -36902023 - AluSx SINE Alu -31 281 2 206 352 9 0 chr6 145513330 145513342 -36901900 + GA-rich Low_complexity Low_complexity 2 12 -95 2155 133 0 0 chr6 145513342 145513650 -36901592 + AluSx SINE Alu 1 308 -4 206 352 9 0 chr6 145513650 145513742 -36901500 + GA-rich Low_complexity Low_complexity 12 107 0 380 176 55 33 chr6 145514102 145514193 -36901049 + LTR67 LTR ERVL 457 549 -8 47 19 0 0 chr6 145514391 145514445 -36900797 + AT_rich Low_complexity Low_complexity 1 54 0 1664 159 6 105 chr6 145514545 145514695 -36900547 + AluJb SINE Alu 2 103 -199 2399 85 0 10 chr6 145514695 145515002 -36900240 - AluSg1 SINE Alu -5 304 1 1664 159 6 105 chr6 145515002 145515184 -36900058 + AluJb SINE Alu 103 301 -1 188 324 114 19 chr6 145515753 145515858 -36899384 + MER5A DNA MER1_type 7 121 -68 3260 128 15 0 chr6 145515948 145516415 -36898827 + MER1A DNA MER1_type 56 529 0 322 351 13 26 chr6 145516595 145516746 -36898496 - L2 LINE L2 -1 3271 3123 186 43 0 0 chr6 145516795 145516818 -36898424 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 5143 98 7 21 chr6 145516820 145517352 -36897890 - L1PA13 LINE L1 -19 6144 5625 2280 100 30 0 chr6 145517352 145517653 -36897589 - AluSg SINE Alu 0 310 1 5143 98 7 21 chr6 145517653 145517879 -36897363 - L1PA13 LINE L1 -538 5625 5397 2362 66 26 7 chr6 145517880 145518183 -36897059 - AluSc SINE Alu 0 309 1 683 294 92 33 chr6 145518220 145518421 -36896821 - L2 LINE L2 -909 2405 2217 1808 161 0 0 chr6 145518421 145518701 -36896541 + AluJo SINE Alu 1 280 -32 225 65 0 0 chr6 145518701 145518732 -36896510 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 683 294 92 33 chr6 145518732 145518866 -36896376 - L2 LINE L2 -1096 2218 2049 700 194 90 0 chr6 145518882 145519026 -36896216 - MLT1F LTR MaLR 0 542 386 273 151 38 0 chr6 145519016 145519069 -36896173 + Alu SINE Alu 244 298 -3 * 257 214 110 64 chr6 145519078 145519251 -36895991 + L1ME4a LINE L1 5930 6110 -11 2319 96 0 0 chr6 145519341 145519634 -36895608 - AluSx SINE Alu -18 294 2 324 0 0 0 chr6 145519639 145519675 -36895567 + (TG)n Simple_repeat Simple_repeat 1 36 0 550 261 99 0 chr6 145519730 145519872 -36895370 + FRAM SINE Alu 4 159 -17 373 250 125 35 chr6 145520903 145521047 -36894195 - MLT1J2 LTR MaLR -22 428 272 207 0 0 0 chr6 145521117 145521140 -36894102 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1143 103 7 0 chr6 145521140 145521295 -36893947 - L1PB2 LINE L1 -4 6147 5992 865 218 25 56 chr6 145521309 145521340 -36893902 + Charlie4a DNA MER1_type 50 80 -1881 2244 108 0 7 chr6 145521340 145521647 -36893595 + AluSx SINE Alu 1 305 -7 865 218 25 56 chr6 145521647 145521785 -36893457 + Charlie4a DNA MER1_type 80 209 -1752 2179 107 0 20 chr6 145521785 145522085 -36893157 + AluSg SINE Alu 1 294 -16 865 218 25 56 chr6 145522085 145522198 -36893044 + Charlie4a DNA MER1_type 209 324 -184 1536 230 145 50 chr6 145522204 145522687 -36892555 + MLT1F LTR MaLR 11 539 -3 342 138 31 132 chr6 145522687 145522718 -36892524 + Charlie4a DNA MER1_type 322 357 -1604 2305 97 7 13 chr6 145522718 145523028 -36892214 - AluSq SINE Alu -5 308 1 342 138 31 132 chr6 145523028 145523129 -36892113 + Charlie4a DNA MER1_type 357 438 -70 740 217 0 0 chr6 145523129 145523258 -36891984 + FLAM_A SINE Alu 1 129 -4 23 0 0 0 chr6 145523258 145523281 -36891961 + AT_rich Low_complexity Low_complexity 1 23 0 284 234 0 39 chr6 145523281 145523358 -36891884 + Charlie4a DNA MER1_type 426 499 -9 2470 82 3 0 chr6 145523366 145523670 -36891572 + AluSg SINE Alu 1 305 -5 340 238 0 0 chr6 145524232 145524295 -36890947 - L2 LINE L2 -5 3267 3205 915 160 18 12 chr6 145524327 145524496 -36890746 + MLT1A1 LTR MaLR 1 170 -195 1947 166 49 35 chr6 145524522 145525058 -36890184 + MLT2A2 LTR ERVL 1 545 -9 685 242 47 11 chr6 145525214 145525404 -36889838 + MLT1A1 LTR MaLR 162 358 -7 393 365 11 45 chr6 145525883 145526061 -36889181 - MER91A DNA MER1_type -2 194 23 888 201 6 45 chr6 145526778 145526957 -36888285 + MER5A DNA MER1_type 18 189 0 1273 111 0 32 chr6 145528080 145528094 -36887148 + AluSg/x SINE Alu 121 134 -178 2067 147 0 0 chr6 145528094 145528393 -36886849 + AluSx SINE Alu 1 299 -13 1273 111 0 32 chr6 145528393 145528567 -36886675 + AluSg/x SINE Alu 134 303 -9 1274 212 0 5 chr6 145528615 145528837 -36886405 + MER58A DNA MER1_type 1 221 -3 1782 143 37 4 chr6 145529706 145529979 -36885263 + AluJo SINE Alu 1 282 -30 189 196 0 0 chr6 145530391 145530437 -36884805 + GA-rich Low_complexity Low_complexity 3 48 0 1271 183 0 18 chr6 145530487 145530706 -36884536 - AluJb SINE Alu -97 215 1 261 205 132 19 chr6 145530712 145530856 -36884386 - L1M4 LINE L1 -782 5364 5198 986 120 8 0 chr6 145530896 145531029 -36884213 - AluJb SINE Alu -178 134 1 558 134 7 35 chr6 145531029 145531171 -36884071 + (TTTC)n Simple_repeat Simple_repeat 4 141 0 329 264 103 16 chr6 145531176 145531222 -36884020 - L1M4 LINE L1 -923 5223 5182 507 219 73 24 chr6 145531222 145531345 -36883897 - FLAM_C SINE Alu -4 129 1 329 264 103 16 chr6 145531345 145531565 -36883677 - L1M4 LINE L1 -964 5182 4927 1086 120 7 0 chr6 145531565 145531735 -36883507 - AluSp SINE Alu 0 304 134 2309 105 0 6 chr6 145531735 145532050 -36883192 - AluSp SINE Alu 0 313 1 589 310 38 75 chr6 145532050 145532333 -36882909 - L1M4 LINE L1 -1214 4932 4640 2298 102 0 10 chr6 145532333 145532646 -36882596 - AluSx SINE Alu -2 310 1 589 310 38 75 chr6 145532646 145533119 -36882123 - L1M4 LINE L1 -1506 4640 4204 812 247 186 3 chr6 145533127 145533418 -36881824 + L1M4 LINE L1 4615 4958 -1188 959 220 33 70 chr6 145533497 145533797 -36881445 + MER46C DNA MER2_type 2 290 -48 283 186 71 14 chr6 145533809 145533879 -36881363 + MIR SINE MIR 181 254 -8 1930 102 64 0 chr6 145533888 145534190 -36881052 + AluSg SINE Alu 1 319 0 201 237 0 0 chr6 145534199 145534258 -36880984 + (CTA)n Simple_repeat Simple_repeat 1 59 0 201 256 0 39 chr6 145534605 145534683 -36880559 + GA-rich Low_complexity Low_complexity 1 75 0 870 269 131 62 chr6 145535058 145535625 -36879617 + L1M4 LINE L1 3615 4252 -1894 1536 165 0 94 chr6 145535625 145535934 -36879308 + AluJo SINE Alu 1 280 -32 870 269 131 62 chr6 145535934 145536150 -36879092 + L1M4 LINE L1 4252 4452 -1694 506 116 47 35 chr6 145536156 145536242 -36879000 - FRAM SINE Alu -13 163 77 298 227 67 0 chr6 145536245 145536320 -36878922 + L1ME3A LINE L1 5808 5887 -283 2203 105 0 7 chr6 145536639 145536935 -36878307 + AluSx SINE Alu 1 294 -18 2091 192 0 24 chr6 145537374 145537754 -36877488 + MLT1A2 LTR MaLR 4 374 0 279 0 0 0 chr6 145537866 145537897 -36877345 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2248 90 0 0 chr6 145537899 145538178 -36877064 - AluSg SINE Alu -30 280 2 879 171 171 0 chr6 145538690 145538865 -36876377 + AluJo SINE Alu 90 294 -18 372 262 10 0 chr6 145539011 145539114 -36876128 + L1ME3A LINE L1 3930 4033 -2113 547 91 26 13 chr6 145539114 145539191 -36876051 - AluY SINE Alu -18 293 216 222 91 0 0 chr6 145539624 145539657 -36875585 + (TG)n Simple_repeat Simple_repeat 2 34 0 1816 167 0 23 chr6 145539710 145540010 -36875232 + AluJo SINE Alu 1 293 -19 2134 98 0 11 chr6 145540218 145540534 -36874708 - AluSq SINE Alu 0 313 1 1608 214 0 16 chr6 145540687 145540996 -36874246 + AluJo SINE Alu 1 304 -8 1320 232 100 69 chr6 145541033 145541382 -36873860 + L1ME3A LINE L1 5283 5620 -550 1488 175 45 8 chr6 145541382 145541650 -36873592 + AluJo SINE Alu 5 282 -30 1320 232 100 69 chr6 145541650 145541778 -36873464 + L1ME3A LINE L1 5620 5743 -427 1708 145 0 0 chr6 145541778 145542026 -36873216 - AluJb SINE Alu -14 298 51 1320 232 100 69 chr6 145542026 145542166 -36873076 + L1ME3A LINE L1 5743 5925 -245 2372 93 3 0 chr6 145542249 145542549 -36872693 + AluSp SINE Alu 1 301 -12 1030 204 0 0 chr6 145542824 145542996 -36872246 + FAM SINE Alu 1 172 -3 415 268 145 0 chr6 145543170 145543308 -36871934 - MIR SINE MIR 0 262 105 1514 168 3 115 chr6 145543931 145544271 -36870971 + AluJo SINE Alu 1 302 0 291 276 0 13 chr6 145544275 145544351 -36870891 + GA-rich Low_complexity Low_complexity 2 76 0 743 113 0 230 chr6 145544561 145544774 -36870468 + AluJb SINE Alu 141 304 -8 336 48 0 0 chr6 145545412 145545454 -36869788 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 1295 129 68 68 chr6 145545454 145545702 -36869540 - AluJb SINE Alu -26 286 39 350 220 178 23 chr6 145546761 145546949 -36868293 + MIR SINE MIR 43 262 0 433 286 0 0 chr6 145547859 145547971 -36867271 + MER94 DNA DNA 19 130 -4 1308 138 230 4 chr6 145548245 145548484 -36866758 + AluJo SINE Alu 1 293 -9 201 277 31 92 chr6 145548630 145548760 -36866482 + MIR3 SINE MIR 1 122 -86 4849 206 74 76 chr6 145549009 145549239 -36866003 - L1MC4 LINE L1 0 8042 7813 544 33 0 0 chr6 145549239 145549300 -36865942 + L1PA8 LINE L1 6099 6159 -13 2236 76 7 7 chr6 145549303 145549615 -36865627 + AluSp SINE Alu 1 313 0 4849 206 74 76 chr6 145549615 145550965 -36864277 - L1MC4 LINE L1 -231 7811 6461 392 270 242 5 chr6 145551093 145551304 -36863938 + MIR SINE MIR 1 261 -1 2060 118 37 0 chr6 145551643 145551939 -36863303 - AluSc SINE Alu -2 307 1 890 161 14 0 chr6 145552045 145552188 -36863054 + FRAM SINE Alu 6 150 -26 1615 181 4 7 chr6 145552212 145552489 -36862753 + AluJb SINE Alu 1 276 -36 904 40 34 28 chr6 145552843 145553019 -36862223 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 723 189 0 0 chr6 145553040 145553151 -36862091 - FLAM_C SINE Alu -30 113 3 1731 112 0 13 chr6 145553158 145553423 -36861819 - AluSx SINE Alu 0 314 53 237 364 30 0 chr6 145554062 145554161 -36861081 + LTR67 LTR ERVL 100 201 -356 293 307 52 103 chr6 145554684 145554974 -36860268 - L2 LINE L2 0 3272 2998 367 307 66 0 chr6 145554982 145555119 -36860123 - MIR SINE MIR -5 257 112 241 289 147 39 chr6 145555130 145555435 -36859807 - L2 LINE L2 -301 2971 2617 1478 197 80 53 chr6 145555436 145555544 -36859698 - MLT1C LTR MaLR -4 463 359 4354 113 57 83 chr6 145555544 145556350 -36858892 + LTR1 LTR ERV1 1 785 0 1478 197 80 53 chr6 145556350 145556692 -36858550 - MLT1C LTR MaLR -108 359 1 217 349 9 18 chr6 145556695 145556804 -36858438 - L2 LINE L2 -705 2609 2502 752 301 146 12 chr6 145558778 145559120 -36856122 - LTR16C LTR ERVL -3 488 101 1913 153 0 3 chr6 145559473 145559776 -36855466 - AluSx SINE Alu 0 302 1 2325 85 7 3 chr6 145560368 145560662 -36854580 - AluSq SINE Alu -18 295 1 2185 78 11 3 chr6 145560756 145561058 -36854184 + AluSg SINE Alu 1 304 0 310 338 75 12 chr6 145561060 145561220 -36854022 - MIR SINE MIR -87 175 6 1748 191 3 0 chr6 145561344 145561647 -36853595 - AluJo SINE Alu -8 304 1 1216 104 0 6 chr6 145561704 145561861 -36853381 - AluSg/x SINE Alu -22 290 134 2101 78 15 0 chr6 145561861 145562131 -36853111 - AluSp SINE Alu -1 312 39 701 149 7 108 chr6 145562510 145562658 -36852584 - FLAM_C SINE Alu 0 133 1 338 270 213 44 chr6 145566607 145566922 -36848320 + L3 LINE CR1 1209 1576 -1 1791 171 7 3 chr6 145567497 145567796 -36847446 + AluJo SINE Alu 1 300 -12 335 384 20 34 chr6 145567963 145568109 -36847133 - MIR3 SINE MIR -61 147 4 1875 164 3 0 chr6 145568624 145568922 -36846320 - AluSx SINE Alu -13 299 1 26 74 0 0 chr6 145570541 145570595 -36844647 + AT_rich Low_complexity Low_complexity 1 54 0 1871 161 7 0 chr6 145570601 145570887 -36844355 - AluJb SINE Alu -23 289 2 1751 159 3 41 chr6 145571780 145572100 -36843142 + AluJo SINE Alu 1 308 -4 181 273 121 53 chr6 145572481 145572613 -36842629 + L3 LINE CR1 966 1106 -471 239 370 94 21 chr6 145572664 145572856 -36842386 - MIR SINE MIR -55 207 2 993 193 195 50 chr6 145572924 145573407 -36841835 + LTR41 LTR ERVL 1 656 -117 1850 149 17 3 chr6 145573407 145573702 -36841540 - AluJb SINE Alu -13 299 1 993 193 195 50 chr6 145573702 145573750 -36841492 + LTR41 LTR ERVL 656 696 -77 2033 142 3 0 chr6 145574773 145575069 -36840173 - AluJb SINE Alu -15 297 1 358 101 20 30 chr6 145575323 145575422 -36839820 + (TA)n Simple_repeat Simple_repeat 1 98 0 23 105 0 0 chr6 145575429 145575515 -36839727 + AT_rich Low_complexity Low_complexity 1 86 0 247 75 0 38 chr6 145575568 145575621 -36839621 + (TA)n Simple_repeat Simple_repeat 1 51 0 317 261 33 0 chr6 145575625 145575717 -36839525 + L1MC4 LINE L1 6614 6708 -1334 700 139 8 2 chr6 145576158 145576413 -36838829 + AluSx SINE Alu 1 302 -7 22 0 0 0 chr6 145576679 145576701 -36838541 + AT_rich Low_complexity Low_complexity 1 22 0 246 172 69 0 chr6 145576758 145576816 -36838426 + (CATTA)n Simple_repeat Simple_repeat 1 62 0 1653 174 17 10 chr6 145577383 145577681 -36837561 - AluJb SINE Alu -12 300 1 825 192 93 31 chr6 145578076 145578269 -36836973 + MIR SINE MIR 36 240 -22 1811 146 35 28 chr6 145578721 145579009 -36836233 - AluJb SINE Alu -22 290 1 375 261 43 14 chr6 145580094 145580232 -36835010 + L2 LINE L2 3129 3270 -2 540 113 0 0 chr6 145580439 145580519 -36834723 + L1MA5A LINE L1 6215 6294 -3 240 200 0 0 chr6 145580734 145580789 -36834453 + (TA)n Simple_repeat Simple_repeat 1 55 0 1924 124 31 7 chr6 145581370 145581660 -36833582 - AluSx SINE Alu -14 298 2 229 206 192 0 chr6 145583179 145583252 -36831990 - LTR66 LTR ERVL -172 438 352 912 156 0 22 chr6 145583355 145583490 -36831752 + FLAM_C SINE Alu 1 132 -1 399 211 0 0 chr6 145583822 145583917 -36831325 + (CTGGGG)n Simple_repeat Simple_repeat 6 100 0 253 132 0 0 chr6 145585032 145585070 -36830172 + MER53 DNA DNA 151 188 -1 246 382 0 0 chr6 145585078 145585180 -36830062 - MER5A DNA MER1_type -29 160 59 1866 218 126 24 chr6 145585723 145586215 -36829027 + MLT1F1 LTR MaLR 26 567 0 25 0 0 0 chr6 145588015 145588040 -36827202 + AT_rich Low_complexity Low_complexity 1 25 0 342 164 233 0 chr6 145589725 145589798 -36825444 + MER3 DNA MER1_type 1 90 -119 285 118 0 88 chr6 145589773 145589841 -36825401 - MER3 DNA MER1_type -18 191 130 * 4922 196 32 26 chr6 145589842 145590228 -36825014 + L1MB2 LINE L1 4363 4745 -1426 1108 172 88 9 chr6 145590228 145590443 -36824799 - MER46A DNA MER2_type 0 236 5 4922 196 32 26 chr6 145590443 145590508 -36824734 + L1MB2 LINE L1 4745 4808 -1363 1944 151 10 0 chr6 145590508 145590799 -36824443 + AluSx SINE Alu 1 294 -18 4922 196 32 26 chr6 145590799 145592148 -36823094 + L1MB2 LINE L1 4808 6167 -4 348 235 94 0 chr6 145592157 145592242 -36823000 - MER3 DNA MER1_type -69 140 48 534 124 0 56 chr6 145595182 145595271 -36819971 - AluJb SINE Alu -16 296 213 316 214 86 0 chr6 145596399 145596469 -36818773 - MIR SINE MIR -7 255 180 2497 51 0 3 chr6 145597321 145597615 -36817627 - AluY SINE Alu -18 293 1 740 159 30 30 chr6 145600107 145600239 -36815003 - FLAM_A SINE Alu 0 133 2 509 286 59 69 chr6 145601397 145601701 -36813541 - MER102b DNA MER1_type -8 333 33 22 0 0 0 chr6 145601991 145602013 -36813229 + AT_rich Low_complexity Low_complexity 1 22 0 1892 168 3 13 chr6 145602381 145602696 -36812546 - AluJb SINE Alu 0 312 1 387 0 0 0 chr6 145603094 145603137 -36812105 + (CA)n Simple_repeat Simple_repeat 2 44 0 213 153 51 17 chr6 145603934 145603993 -36811249 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1753 150 38 17 chr6 145605707 145606000 -36809242 - AluJo SINE Alu -12 300 2 22 0 0 0 chr6 145606475 145606497 -36808745 + AT_rich Low_complexity Low_complexity 1 22 0 2204 128 0 0 chr6 145606989 145607287 -36807955 - AluSx SINE Alu -14 298 1 22 0 0 0 chr6 145608016 145608038 -36807204 + AT_rich Low_complexity Low_complexity 1 22 0 1672 168 14 18 chr6 145608040 145608325 -36806917 - AluJo SINE Alu -25 287 4 321 311 91 19 chr6 145610090 145610256 -36804986 + MIR SINE MIR 37 212 -50 1968 144 0 3 chr6 145611587 145611909 -36803333 + AluSx SINE Alu 1 321 0 256 347 127 13 chr6 145612111 145612261 -36802981 + MIR3 SINE MIR 36 202 -6 561 0 0 0 chr6 145612312 145612377 -36802865 - L1P1 LINE L1 -395 5760 5696 * 3411 5 0 0 chr6 145612375 145612772 -36802470 + L1HS LINE L1 5750 6146 -9 270 0 0 0 chr6 145612772 145612802 -36802440 + (CAA)n Simple_repeat Simple_repeat 2 31 0 263 250 48 12 chr6 145612805 145612889 -36802353 - MIR SINE MIR -28 234 148 182 200 50 0 chr6 145612902 145612942 -36802300 + L2 LINE L2 3271 3312 -1 1904 153 0 3 chr6 145613307 145613595 -36801647 - AluJb SINE Alu -25 287 1 647 289 66 40 chr6 145613620 145613969 -36801273 - L1MC4a LINE L1 -1926 5882 5525 321 359 28 7 chr6 145614609 145614751 -36800491 - MER5A DNA MER1_type -44 145 1 1523 186 20 34 chr6 145614861 145615156 -36800086 - AluJo SINE Alu -21 291 1 2383 95 0 0 chr6 145615195 145615499 -36799743 - AluY SINE Alu -7 304 1 6214 145 41 9 chr6 145615655 145616148 -36799094 - L1MA4 LINE L1 -5 6295 5819 360 0 0 0 chr6 145616148 145616188 -36799054 + (TA)n Simple_repeat Simple_repeat 2 41 0 6214 145 41 9 chr6 145616188 145617793 -36797449 - L1MA4 LINE L1 -481 5819 4130 566 350 10 5 chr6 145617883 145618086 -36797156 + MIR SINE MIR 59 262 0 30 27 0 0 chr6 145618435 145618472 -36796770 + AT_rich Low_complexity Low_complexity 1 37 0 1110 186 176 13 chr6 145618726 145619027 -36796215 + MLT1A2 LTR MaLR 25 374 0 419 316 105 13 chr6 145619382 145619610 -36795632 + MIR SINE MIR 2 250 -12 2205 138 8 8 chr6 145619666 145620021 -36795221 + THE1A LTR MaLR 1 355 0 341 301 161 0 chr6 145620368 145620511 -36794731 + MIR3 SINE MIR 42 207 -1 1746 180 3 32 chr6 145620559 145620870 -36794372 - AluJo SINE Alu -10 302 1 2436 77 0 0 chr6 145621351 145621648 -36793594 + AluY SINE Alu 1 297 -14 280 262 123 33 chr6 145621882 145622004 -36793238 - MIR3 SINE MIR -72 136 4 1734 153 0 11 chr6 145622283 145622551 -36792691 + AluJo SINE Alu 1 265 -47 3737 48 0 0 chr6 145622551 145623010 -36792232 + L1PA5 LINE L1 5696 6154 0 294 257 54 0 chr6 145623299 145623373 -36791869 + L2 LINE L2 2976 3053 -219 2715 32 0 0 chr6 145623842 145624152 -36791090 + AluY SINE Alu 2 311 0 605 324 11 6 chr6 145624551 145624727 -36790515 - MIR SINE MIR -79 183 7 184 143 0 29 chr6 145625911 145625946 -36789296 - L2 LINE L2 -17 3296 3263 1236 262 131 18 chr6 145626356 145627091 -36788151 - L2 LINE L2 -7 3306 2476 286 250 138 50 chr6 145627094 145627254 -36787988 + L2 LINE L2 3140 3313 0 1946 161 7 0 chr6 145627755 145628059 -36787183 + AluSx SINE Alu 1 306 -6 412 185 0 12 chr6 145628268 145628349 -36786893 + MIR SINE MIR 183 262 0 197 356 93 17 chr6 145628388 145628506 -36786736 - L2 LINE L2 -10 3262 3136 825 209 26 0 chr6 145630455 145630608 -36784634 + FAM SINE Alu 1 157 -18 208 240 40 0 chr6 145633403 145633453 -36781789 + MIR SINE MIR 114 165 -97 620 283 218 17 chr6 145633505 145634014 -36781228 - L2 LINE L2 -21 3292 2672 1973 133 7 10 chr6 145634095 145634396 -36780846 + AluSx SINE Alu 1 300 -12 2130 115 23 7 chr6 145634463 145634767 -36780475 + AluSx SINE Alu 1 309 -3 1391 144 19 5 chr6 145634828 145635043 -36780199 - AluJo SINE Alu -9 303 86 2810 6 0 13 chr6 145635184 145635499 -36779743 + AluY SINE Alu 1 311 0 1676 160 13 62 chr6 145635866 145636025 -36779217 - AluJb SINE Alu -20 292 154 2185 89 34 10 chr6 145636025 145636318 -36778924 - AluSq SINE Alu -10 303 4 1676 160 13 62 chr6 145636318 145636465 -36778777 - AluJb SINE Alu -158 154 1 388 289 33 0 chr6 145637125 145637277 -36777965 - MER113 DNA MER1_type? -34 487 331 411 260 19 10 chr6 145637312 145637416 -36777826 + L2 LINE L2 3209 3313 0 2273 101 0 0 chr6 145637740 145638037 -36777205 + AluSx SINE Alu 1 297 -15 1744 168 3 26 chr6 145638046 145638349 -36776893 + AluJb SINE Alu 1 296 -16 281 310 18 18 chr6 145638521 145638634 -36776608 + MER94 DNA DNA 22 134 0 210 234 153 45 chr6 145638843 145638954 -36776288 - MIR SINE MIR -62 146 24 2140 98 3 3 chr6 145639423 145639732 -36775510 - AluSx SINE Alu 0 309 1 224 329 82 27 chr6 145639875 145640021 -36775221 - L3b LINE CR1 -22 1561 1408 323 239 0 14 chr6 145640646 145640717 -36774525 + L2 LINE L2 3230 3299 -14 197 313 156 10 chr6 145641710 145641806 -36773436 + L2 LINE L2 3147 3256 -16 218 238 72 131 chr6 145642612 145642809 -36772433 - MIR SINE MIR -49 213 32 192 40 0 0 chr6 145643872 145643897 -36771345 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 459 311 97 10 chr6 145644139 145644335 -36770907 + MIR SINE MIR 40 252 -10 573 272 100 0 chr6 145644432 145644612 -36770630 + MIR SINE MIR 57 254 -8 2378 77 10 10 chr6 145645001 145645314 -36769928 - AluSp SINE Alu 0 313 1 22 35 0 0 chr6 145645540 145645569 -36769673 + AT_rich Low_complexity Low_complexity 1 29 0 373 183 0 54 chr6 145646177 145646270 -36768972 - Tigger7 DNA MER2_type -10 2481 2394 1368 184 45 0 chr6 145646276 145646521 -36768721 - Tigger7 DNA MER2_type -2231 256 1 296 184 26 0 chr6 145646636 145646712 -36768530 - MER116 DNA Mariner -2 78 1 317 109 0 0 chr6 145646727 145646773 -36768469 + MER68 LTR ERV1 1 46 -516 23 33 0 0 chr6 145646773 145646803 -36768439 + AT_rich Low_complexity Low_complexity 1 30 0 364 296 80 8 chr6 145647530 145647655 -36767587 - L2 LINE L2 -16 3256 3123 2208 93 0 14 chr6 145649450 145649766 -36765476 + AluSx SINE Alu 1 312 0 207 321 0 0 chr6 145650296 145650352 -36764890 - L2 LINE L2 -6 3266 3211 327 194 0 0 chr6 145650550 145650612 -36764630 + MER46A DNA MER2_type 175 236 0 24 0 0 0 chr6 145651784 145651808 -36763434 + AT_rich Low_complexity Low_complexity 1 24 0 1122 193 40 29 chr6 145652041 145652315 -36762927 - L1MC1 LINE L1 -13 6320 6044 2093 128 0 0 chr6 145652709 145653034 -36762208 - AluSx SINE Alu 0 325 1 763 203 0 0 chr6 145654122 145654255 -36760987 - FLAM_A SINE Alu 0 133 1 2299 82 3 3 chr6 145655241 145655545 -36759697 + AluSx SINE Alu 1 304 -8 1998 153 0 0 chr6 145657598 145657892 -36757350 - AluJo SINE Alu -14 298 5 258 333 63 0 chr6 145659445 145659556 -36755686 - MIR SINE MIR -33 229 112 862 184 61 138 chr6 145660326 145660717 -36754525 + MLT1A1 LTR MaLR 5 365 0 313 327 235 18 chr6 145661399 145661680 -36753562 - L2 LINE L2 -6 3266 2925 25 31 0 0 chr6 145662006 145662038 -36753204 + AT_rich Low_complexity Low_complexity 1 32 0 1907 167 24 11 chr6 145662058 145662151 -36753091 - L1MA6 LINE L1 -290 6010 5918 712 273 31 35 chr6 145662151 145662470 -36752772 - L1PA14 LINE L1 -244 5917 5600 1759 159 11 7 chr6 145662948 145663231 -36752011 + AluJb SINE Alu 1 284 -28 2243 114 0 7 chr6 145663337 145663643 -36751599 + AluSx SINE Alu 1 304 -8 365 292 77 30 chr6 145663698 145663866 -36751376 + MER5B DNA MER1_type 1 176 -2 256 237 0 51 chr6 145664019 145664072 -36751170 + Charlie2b DNA MER1_type 6 55 -2727 1207 192 80 99 chr6 145664072 145664557 -36750685 - Charlie4a DNA MER1_type -1 507 32 2222 103 13 7 chr6 145664666 145664966 -36750276 - AluSx SINE Alu -10 302 1 283 221 186 0 chr6 145665066 145665152 -36750090 + Charlie2b DNA MER1_type 556 657 -2125 249 157 0 39 chr6 145665205 145665256 -36749986 + MER47A DNA MER2_type 1 49 -317 493 292 19 19 chr6 145665423 145665577 -36749665 + MER5A DNA MER1_type 36 189 0 1056 258 48 80 chr6 145666290 145666814 -36748428 + MER34 LTR ERV1 1 507 -35 936 141 85 45 chr6 145667076 145667400 -36747842 - MER21B LTR ERV1 -6 857 405 1952 192 88 22 chr6 145667579 145667986 -36747256 - MER21B LTR ERV1 -429 434 1 2304 96 0 7 chr6 145669126 145669427 -36745815 + AluSg SINE Alu 1 299 -11 2236 81 3 10 chr6 145669632 145669927 -36745315 - AluSc SINE Alu -15 294 2 181 257 0 0 chr6 145670179 145670214 -36745028 - L2 LINE L2 -43 3270 3236 2048 57 49 0 chr6 145670243 145670506 -36744736 + AluY SINE Alu 1 276 -35 252 0 0 0 chr6 145670508 145670536 -36744706 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2124 162 15 13 chr6 145670545 145670941 -36744301 - MER57A LTR ERV1 -4 399 3 1928 126 20 23 chr6 145671117 145671418 -36743824 + AluSq SINE Alu 1 300 -13 37 0 0 0 chr6 145671632 145671669 -36743573 + AT_rich Low_complexity Low_complexity 1 37 0 1921 96 4 0 chr6 145671769 145672020 -36743222 + AluSp SINE Alu 51 302 -11 2070 150 102 10 chr6 145672093 145672487 -36742755 + MER34C LTR ERV1 1 430 -155 5292 109 62 16 chr6 145672521 145673131 -36742111 + Tigger1 DNA MER2_type 1170 1834 -584 2171 97 4 0 chr6 145673131 145673459 -36741783 + AluSg SINE Alu 1 329 0 5292 109 62 16 chr6 145673459 145673711 -36741531 + Tigger1 DNA MER2_type 1834 2073 -345 1347 136 47 8 chr6 145673715 145673764 -36741478 + Tigger1 DNA MER2_type 2174 2220 -198 2255 112 0 7 chr6 145673764 145674069 -36741173 - AluSx SINE Alu -9 303 1 1347 136 47 8 chr6 145674069 145674255 -36740987 + Tigger1 DNA MER2_type 2220 2418 0 566 200 104 0 chr6 145674276 145674411 -36740831 + MER34B LTR ERV1 415 563 -2 468 0 0 0 chr6 145675489 145675541 -36739701 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1714 154 33 0 chr6 145675541 145675814 -36739428 - AluJo SINE Alu -30 282 1 1704 177 20 0 chr6 145675839 145676133 -36739109 + AluJo SINE Alu 1 300 -12 1516 218 93 12 chr6 145676439 145676925 -36738317 + L1MB1 LINE L1 2371 2895 -3251 1467 230 74 55 chr6 145676948 145677475 -36737767 + MER34C LTR ERV1 49 585 0 10252 167 44 21 chr6 145677478 145677606 -36737636 + L1MB1 LINE L1 2915 3039 -3129 1789 194 0 0 chr6 145677606 145678090 -36737152 + AluJo SINE Alu 1 484 0 10252 167 44 21 chr6 145678090 145681133 -36734109 + L1MB1 LINE L1 3039 6166 -2 286 261 34 11 chr6 145681160 145681248 -36733994 + L1ME LINE L1 5550 5639 -482 23 54 0 0 chr6 145681471 145681508 -36733734 + AT_rich Low_complexity Low_complexity 1 37 0 714 172 22 30 chr6 145683268 145683402 -36731840 + FLAM_A SINE Alu 1 133 0 2072 142 23 0 chr6 145683896 145684199 -36731043 + AluSx SINE Alu 1 310 -2 457 299 82 57 chr6 145684445 145684689 -36730553 - MIR SINE MIR -12 250 1 353 321 0 18 chr6 145684933 145685045 -36730197 - MIR SINE MIR -65 143 34 1996 135 31 9 chr6 145685518 145685837 -36729405 + MER44D DNA MER2_type 14 609 0 661 145 58 36 chr6 145685982 145686120 -36729122 - L2 LINE L2 0 3313 3173 215 370 30 20 chr6 145686835 145686935 -36728307 - MIR SINE MIR -131 131 31 28 29 0 0 chr6 145687763 145687798 -36727444 + AT_rich Low_complexity Low_complexity 1 35 0 244 132 0 0 chr6 145689446 145689484 -36725758 - MER20 DNA MER1_type -25 194 157 504 206 119 24 chr6 145689491 145689617 -36725625 - MIR SINE MIR -13 249 112 2261 117 18 0 chr6 145689660 145689994 -36725248 - MER47A DNA MER2_type 0 366 27 1528 139 60 53 chr6 145690482 145690902 -36724340 - AluJb SINE Alu 0 422 1 1874 129 36 0 chr6 145691539 145691848 -36723394 - L1MA9 LINE L1 -5 6307 5988 208 135 0 0 chr6 145694050 145694087 -36721155 + (A)n Simple_repeat Simple_repeat 1 37 0 409 266 127 8 chr6 145694753 145695005 -36720237 - L1ME4a LINE L1 -264 5857 5576 651 292 168 49 chr6 145695098 145695728 -36719514 - L2 LINE L2 -101 3212 2492 1797 169 11 0 chr6 145695938 145696222 -36719020 - AluSx SINE Alu -15 297 11 347 276 17 9 chr6 145696383 145696499 -36718743 - L1ME LINE L1 -484 5637 5521 546 125 167 0 chr6 145697502 145697598 -36717644 - MER3 DNA MER1_type 0 209 98 246 314 64 43 chr6 145697720 145697860 -36717382 - MIR3 SINE MIR -13 195 53 221 276 17 0 chr6 145697948 145698006 -36717236 + (TATATG)n Simple_repeat Simple_repeat 3 61 0 2546 199 125 9 chr6 145698006 145698703 -36716539 + L1MC4 LINE L1 6975 7752 -290 * 10339 177 27 48 chr6 145698698 145699517 -36715725 + L1MA3 LINE L1 2305 3139 -3166 833 155 0 0 chr6 145699517 145699659 -36715583 + FLAM_C SINE Alu 1 142 -1 10339 177 27 48 chr6 145699659 145701625 -36713617 + L1MA3 LINE L1 3139 5034 -1271 2116 81 0 0 chr6 145701625 145701886 -36713356 + AluY SINE Alu 49 309 -2 10339 177 27 48 chr6 145701886 145703128 -36712114 + L1MA3 LINE L1 5034 6300 -5 493 135 0 83 chr6 145703134 145703230 -36712012 + L1MC4 LINE L1 7942 8029 -13 2427 106 16 24 chr6 145703257 145703533 -36711709 + L1P4 LINE L1 5409 5683 -482 2336 87 0 7 chr6 145703533 145703831 -36711411 + AluSx SINE Alu 1 296 -16 2427 106 16 24 chr6 145703831 145703933 -36711309 + L1P4 LINE L1 5683 5784 -381 244 250 18 71 chr6 145704056 145704168 -36711074 - L1 LINE L1 -3385 2761 2656 2401 105 45 3 chr6 145704366 145704719 -36710523 + L1PA15 LINE L1 5769 6136 -29 31 44 0 0 chr6 145704719 145704764 -36710478 + AT_rich Low_complexity Low_complexity 1 45 0 1611 171 28 11 chr6 145705922 145706208 -36709034 - AluJo SINE Alu -19 293 3 2847 7 0 0 chr6 145706772 145707078 -36708164 - AluYa5 SINE Alu -5 306 1 227 184 41 0 chr6 145707043 145707092 -36708150 - AluJo SINE Alu -132 170 120 228 238 50 0 chr6 145708183 145708263 -36706979 + L1ME4a LINE L1 5347 5430 -691 355 268 199 24 chr6 145708426 145708645 -36706597 + L1ME4a LINE L1 5830 6098 -23 1648 172 34 27 chr6 145708645 145708942 -36706300 + AluJo SINE Alu 1 299 -13 355 268 199 24 chr6 145708942 145708968 -36706274 + L1ME4a LINE L1 6098 6118 -3 2430 84 0 0 chr6 145709661 145709959 -36705283 - AluSc SINE Alu -11 298 1 545 193 128 9 chr6 145710160 145710269 -36704973 - FLAM_A SINE Alu -11 122 1 2209 121 7 3 chr6 145710739 145711045 -36704197 - AluSx SINE Alu -5 307 1 22 35 0 0 chr6 145712375 145712404 -36702838 + AT_rich Low_complexity Low_complexity 1 29 0 329 184 53 0 chr6 145712453 145712529 -36702713 - MER116 DNA Mariner 0 80 1 657 110 0 59 chr6 145713309 145713427 -36701815 - MER1B DNA MER1_type -55 284 174 27 49 0 0 chr6 145714123 145714164 -36701078 + AT_rich Low_complexity Low_complexity 1 41 0 681 209 34 34 chr6 145714310 145714327 -36700915 - AluJb SINE Alu 0 312 296 2461 77 6 0 chr6 145714327 145714638 -36700604 - AluSp SINE Alu 0 313 1 681 209 34 34 chr6 145714638 145714797 -36700445 - AluJb SINE Alu -15 297 136 201 257 54 27 chr6 145715120 145715194 -36700048 + MIR SINE MIR 100 175 -87 635 106 19 0 chr6 145715715 145715819 -36699423 + L1MB3 LINE L1 6078 6183 0 360 43 0 0 chr6 145716670 145716716 -36698526 + (CA)n Simple_repeat Simple_repeat 2 47 0 792 142 52 0 chr6 145716716 145716850 -36698392 - MER46A DNA MER2_type -95 141 1 2077 123 0 43 chr6 145717874 145718198 -36697044 + AluSx SINE Alu 1 310 -2 726 187 57 65 chr6 145718443 145718705 -36696537 + MER4A LTR ERV1 87 346 -318 2235 72 4 4 chr6 145718761 145719040 -36696202 + AluSg SINE Alu 28 306 -4 458 109 244 34 chr6 145719130 145719249 -36695993 + MER4C LTR ERV1 300 443 -22 216 0 0 0 chr6 145719966 145719990 -36695252 + (TG)n Simple_repeat Simple_repeat 1 24 0 2013 123 0 45 chr6 145720127 145720436 -36694806 - AluSx SINE Alu -17 295 1 386 272 69 52 chr6 145720597 145720770 -36694472 - MIR SINE MIR -80 182 7 334 245 61 0 chr6 145720801 145720899 -36694343 - MER58C DNA MER1_type 0 215 112 1812 176 10 0 chr6 145720933 145721235 -36694007 + AluJo SINE Alu 1 305 -7 846 250 58 9 chr6 145721244 145721468 -36693774 + MIR SINE MIR 28 262 0 274 240 141 33 chr6 145722555 145722676 -36692566 + MIR SINE MIR 33 166 -96 267 277 154 56 chr6 145724899 145725256 -36689986 + L1MC/D LINE L1 5417 5808 -2000 1961 128 16 16 chr6 145725556 145725860 -36689382 - AluSx SINE Alu -8 304 1 25 53 0 18 chr6 145725868 145725910 -36689332 + AT_rich Low_complexity Low_complexity 1 43 -13 2048 129 3 0 chr6 145725910 145726196 -36689046 - AluSx SINE Alu -25 287 1 25 53 0 18 chr6 145726196 145726210 -36689032 + AT_rich Low_complexity Low_complexity 43 56 0 243 0 0 0 chr6 145726468 145726495 -36688747 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 324 0 0 0 chr6 145726494 145726530 -36688712 + (TA)n Simple_repeat Simple_repeat 1 36 0 993 140 145 0 chr6 145726795 145727002 -36688240 + L1PA13 LINE L1 5925 6161 -2 2524 126 33 19 chr6 145727930 145728358 -36686884 + MER57B LTR ERV1 1 434 0 198 71 0 0 chr6 145728692 145728720 -36686522 + (A)n Simple_repeat Simple_repeat 1 28 0 605 321 63 25 chr6 145728879 145729116 -36686126 - MIR SINE MIR -12 250 5 1885 160 3 3 chr6 145729260 145729566 -36685676 + AluJb SINE Alu 1 306 -6 812 170 0 22 chr6 145730632 145730767 -36684475 - AluJo SINE Alu -178 134 3 1724 184 13 3 chr6 145730773 145731072 -36684170 - AluJb SINE Alu -10 302 1 2006 114 0 4 chr6 145731137 145731408 -36683834 + AluSx SINE Alu 2 271 -41 1384 165 135 16 chr6 145731799 145732102 -36683140 + MER44D DNA MER2_type 1 609 0 5050 118 15 6 chr6 145733716 145734044 -36681198 - Tigger1 DNA MER2_type -1 2417 2093 1603 198 44 0 chr6 145734044 145734215 -36681027 - AluJb SINE Alu -6 306 115 225 0 0 0 chr6 145734215 145734240 -36681002 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1603 198 44 0 chr6 145734240 145734361 -36680881 - AluJb SINE Alu -197 115 1 5050 118 15 6 chr6 145734361 145734838 -36680404 - Tigger1 DNA MER2_type -325 2093 1605 2540 143 52 11 chr6 145734842 145735281 -36679961 + LTR32 LTR ERVL 15 471 0 9474 117 26 29 chr6 145735281 145735519 -36679723 - Tigger1 DNA MER2_type -813 1605 1368 2323 97 16 3 chr6 145735519 145735827 -36679415 + AluSx SINE Alu 1 312 0 9474 117 26 29 chr6 145735827 145737178 -36678064 - Tigger1 DNA MER2_type -1050 1368 21 544 235 70 113 chr6 145737183 145737381 -36677861 - L2 LINE L2 -40 3232 3050 2003 143 14 3 chr6 145737381 145737674 -36677568 - AluJb SINE Alu -16 296 1 544 235 70 113 chr6 145737674 145737777 -36677465 - L2 LINE L2 -222 3050 2944 285 287 87 13 chr6 145738702 145738852 -36676390 - MIR SINE MIR -1 261 101 29 28 0 0 chr6 145740391 145740427 -36674815 + AT_rich Low_complexity Low_complexity 1 36 0 1748 173 13 17 chr6 145741133 145741433 -36673809 + AluJo SINE Alu 1 299 -13 189 363 104 14 chr6 145741855 145742133 -36673109 - L2 LINE L2 -157 3115 2813 422 288 130 51 chr6 145742184 145742500 -36672742 - MER102b DNA MER1_type 0 341 1 301 318 18 32 chr6 145742637 145742857 -36672385 - MARNA DNA Mariner -231 355 139 223 307 142 39 chr6 145743144 145743271 -36671971 + L2 LINE L2 3121 3260 -12 1908 154 6 28 chr6 145743966 145744285 -36670957 + AluJo SINE Alu 1 312 0 539 163 366 0 chr6 145744572 145744725 -36670517 - MER3 DNA MER1_type 0 209 1 2174 91 0 18 chr6 145745175 145745483 -36669759 + AluSg SINE Alu 1 303 0 25 51 0 0 chr6 145747195 145747234 -36668008 + AT_rich Low_complexity Low_complexity 1 39 0 225 154 0 0 chr6 145747478 145747517 -36667725 + (CA)n Simple_repeat Simple_repeat 1 39 0 446 230 184 13 chr6 145748735 145748887 -36666355 + MIR SINE MIR 85 262 0 423 328 63 6 chr6 145749215 145749389 -36665853 - MIR3 SINE MIR -5 203 20 1950 112 18 21 chr6 145750351 145750637 -36664605 - AluSx SINE Alu -27 285 1 2224 78 4 0 chr6 145754224 145754505 -36660737 + AluSp SINE Alu 18 299 -14 1595 186 159 11 chr6 145754759 145755130 -36660112 - MSTB LTR MaLR 0 426 1 1249 168 53 88 chr6 145755335 145755675 -36659567 - MLT2C1 LTR ERVL 0 397 70 2279 161 46 7 chr6 145756261 145756671 -36658571 + MSTB LTR MaLR 1 426 0 3032 45 0 5 chr6 145756961 145757338 -36657904 - L1PA5 LINE L1 0 6154 5780 21 0 0 0 chr6 145757383 145757404 -36657838 + AT_rich Low_complexity Low_complexity 1 21 0 2182 89 24 3 chr6 145759005 145759298 -36655944 - AluSp SINE Alu -14 299 1 1761 120 28 69 chr6 145759720 145760037 -36655205 + AluJb SINE Alu 1 304 -8 790 239 103 0 chr6 145760370 145760583 -36654659 - MIR SINE MIR -4 258 24 1827 168 3 3 chr6 145760913 145761205 -36654037 + AluJo SINE Alu 1 292 -20 628 269 23 6 chr6 145761954 145762129 -36653113 - MER5B DNA MER1_type 0 178 1 1975 135 0 23 chr6 145762993 145763296 -36651946 + AluSx SINE Alu 1 296 -16 2417 211 38 57 chr6 145764130 145764583 -36650659 + L1ME1 LINE L1 5451 5888 -278 2036 105 23 36 chr6 145764583 145764889 -36650353 + AluSp SINE Alu 1 302 -11 2417 211 38 57 chr6 145764889 145765099 -36650143 + L1ME1 LINE L1 5888 6101 -65 1891 160 0 0 chr6 145765148 145765436 -36649806 - AluSx SINE Alu -22 290 3 731 174 0 0 chr6 145766030 145766139 -36649103 + FLAM_A SINE Alu 1 109 -33 260 276 86 26 chr6 145766413 145766529 -36648713 + 7SK RNA RNA 5 127 -66 37 39 0 0 chr6 145766933 145766984 -36648258 + AT_rich Low_complexity Low_complexity 1 51 0 3181 75 11 47 chr6 145766984 145767235 -36648007 - L1MA1 LINE L1 0 6302 6074 2000 153 0 0 chr6 145767235 145767529 -36647713 - AluSx SINE Alu -18 294 1 3181 75 11 47 chr6 145767529 145767747 -36647495 - L1MA1 LINE L1 -228 6074 5850 186 103 0 0 chr6 145769033 145769062 -36646180 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr6 145771336 145771378 -36643864 + GC_rich Low_complexity Low_complexity 1 42 0 31 44 0 0 chr6 145771434 145771479 -36643763 + GC_rich Low_complexity Low_complexity 1 45 0 333 0 0 0 chr6 145773157 145773194 -36642048 + (A)n Simple_repeat Simple_repeat 1 37 0 543 273 10 51 chr6 145775319 145775386 -36639856 - MIR SINE MIR -3 259 191 2107 133 0 0 chr6 145775386 145775679 -36639563 - AluSx SINE Alu -19 293 1 543 273 10 51 chr6 145775679 145775805 -36639437 - MIR SINE MIR -71 191 75 303 262 38 126 chr6 145775940 145776026 -36639216 + MER5B DNA MER1_type 12 75 -103 1824 171 14 7 chr6 145776026 145776319 -36638923 + AluJo SINE Alu 1 295 -17 303 262 38 126 chr6 145776319 145776415 -36638827 + MER5B DNA MER1_type 75 178 0 1673 202 0 0 chr6 145776849 145777131 -36638111 + AluJb SINE Alu 1 282 -30 2056 138 10 0 chr6 145777435 145777733 -36637509 + AluSx SINE Alu 1 301 -11 1458 144 5 5 chr6 145777860 145778082 -36637160 - AluJb SINE Alu -4 308 87 2426 74 0 3 chr6 145779313 145779611 -36635631 + AluY SINE Alu 1 297 -14 263 321 146 30 chr6 145779822 145779987 -36635255 - MIR3 SINE MIR -5 203 20 2483 80 0 3 chr6 145780285 145780598 -36634644 + AluSx SINE Alu 1 312 0 649 212 45 0 chr6 145780913 145781045 -36634197 - FLAM_C SINE Alu -4 139 2 29 0 0 0 chr6 145781264 145781293 -36633949 + AT_rich Low_complexity Low_complexity 1 29 0 2015 147 7 0 chr6 145781415 145781715 -36633527 + AluSx SINE Alu 1 302 -10 1531 159 58 36 chr6 145781882 145782213 -36633029 + AluJo SINE Alu 1 337 0 391 207 162 9 chr6 145782606 145782717 -36632525 + L2 LINE L2 3144 3271 -1 1648 175 3 41 chr6 145783880 145784200 -36631042 - AluJo SINE Alu -4 308 1 328 298 24 0 chr6 145784267 145784351 -36630891 - MER5A DNA MER1_type -85 104 19 221 214 71 0 chr6 145784644 145784686 -36630556 + L2 LINE L2 3212 3256 -16 21 0 0 0 chr6 145785005 145785026 -36630216 + AT_rich Low_complexity Low_complexity 1 21 0 498 314 32 21 chr6 145785180 145785368 -36629874 + MIR SINE MIR 48 237 -25 2696 135 53 10 chr6 145785914 145786330 -36628912 + MER57B LTR ERV1 1 434 0 807 136 0 0 chr6 145786649 145786759 -36628483 - AluJb SINE Alu -13 299 190 2191 100 52 0 chr6 145789809 145790098 -36625144 + AluSg SINE Alu 1 304 -6 6379 97 20 29 chr6 145790110 145791021 -36624221 + MER4D LTR ERV1 1 903 0 265 316 153 33 chr6 145791387 145791773 -36623469 + L2 LINE L2 1861 2368 -946 1412 151 27 0 chr6 145791869 145792094 -36623148 - L1MB2 LINE L1 -15 6156 5926 766 188 11 192 chr6 145792099 145792385 -36622857 + LTR28 LTR ERV1 3 893 -841 631 232 47 47 chr6 145792394 145792613 -36622629 + MER52A LTR ERV1 340 1305 -12 2739 138 2 12 chr6 145792705 145793125 -36622117 - L1MB2 LINE L1 -252 5919 5504 2384 79 7 0 chr6 145793481 145793773 -36621469 - AluSp SINE Alu -19 294 1 3406 130 31 18 chr6 145794227 145794735 -36620507 + MLT2B2 LTR ERVL 1 515 0 2327 125 0 0 chr6 145795136 145795447 -36619795 - AluSx SINE Alu -1 311 1 2506 59 0 3 chr6 145795900 145796205 -36619037 - AluY SINE Alu -7 304 1 5052 196 37 31 chr6 145796224 145796378 -36618864 - L1MC4a LINE L1 0 7808 7656 1806 185 0 7 chr6 145796378 145796680 -36618562 - AluJb SINE Alu -12 300 1 5052 196 37 31 chr6 145796680 145797529 -36617713 - L1MC4a LINE L1 -152 7656 6796 1588 183 24 7 chr6 145797529 145797819 -36617423 - AluJo SINE Alu -13 299 5 5052 196 37 31 chr6 145797819 145797931 -36617311 - L1MC4a LINE L1 -1012 6796 6686 1928 190 33 0 chr6 145797964 145798296 -36616946 + MER7A DNA MER2_type 1 341 -5 1154 193 86 0 chr6 145798899 145799143 -36616099 - L1MD3 LINE L1 -8 7987 7723 182 333 41 65 chr6 145799563 145799686 -36615556 - L2 LINE L2 0 3272 3153 359 270 243 0 chr6 145799895 145800047 -36615195 + Charlie7 DNA MER1_type 73 261 -2351 31 0 0 0 chr6 145800071 145800102 -36615140 + AT_rich Low_complexity Low_complexity 1 31 0 933 125 0 22 chr6 145800105 145800241 -36615001 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 145800348 145800369 -36614873 + AT_rich Low_complexity Low_complexity 1 21 0 286 267 34 110 chr6 145800644 145800708 -36614534 - MER5B DNA MER1_type 0 178 130 1971 149 22 6 chr6 145800708 145801031 -36614211 + L1MC1 LINE L1 6006 6333 0 286 267 34 110 chr6 145801031 145801112 -36614130 - MER5B DNA MER1_type -48 130 44 846 187 0 0 chr6 145802040 145802195 -36613047 - AluJb SINE Alu -21 291 137 2194 146 8 6 chr6 145802195 145802558 -36612684 - L1MB3 LINE L1 -41 6142 5779 2186 112 0 3 chr6 145803016 145803312 -36611930 + AluSx SINE Alu 1 295 -17 480 111 0 0 chr6 145803454 145803526 -36611716 + (TG)n Simple_repeat Simple_repeat 2 73 0 871 129 0 0 chr6 145805045 145805169 -36610073 - FLAM_C SINE Alu -9 134 11 2631 105 8 30 chr6 145805535 145805907 -36609335 - THE1B LTR MaLR 0 364 1 1981 127 0 23 chr6 145806316 145806623 -36608619 - AluJo SINE Alu -1 311 12 1778 147 16 49 chr6 145806676 145807028 -36608214 - AluSx SINE Alu 0 312 1 3882 61 0 0 chr6 145807846 145808290 -36606952 + MLT2A1 LTR ERVL 1 444 0 456 296 130 0 chr6 145808628 145808797 -36606445 - MIR SINE MIR -70 192 2 187 229 86 0 chr6 145809380 145809450 -36605792 + L2 LINE L2 3078 3153 -160 824 276 26 18 chr6 145809466 145809694 -36605548 + MIR SINE MIR 12 241 -21 583 264 25 12 chr6 145809703 145809866 -36605376 + L2 LINE L2 3149 3313 0 1682 162 45 66 chr6 145810754 145811127 -36604115 + MLT1B LTR MaLR 1 370 -20 1453 189 148 39 chr6 145811127 145811539 -36603703 + MSTB2 LTR MaLR 1 457 0 1682 162 45 66 chr6 145811539 145811560 -36603682 + MLT1B LTR MaLR 370 390 0 3307 152 45 35 chr6 145811633 145811745 -36603497 + MER6A DNA MER2_type 1 110 -755 2595 65 0 0 chr6 145811745 145812055 -36603187 - AluY SINE Alu 0 311 2 3307 152 45 35 chr6 145812055 145812106 -36603136 + MER6A DNA MER2_type 110 159 -706 3112 77 0 0 chr6 145812106 145812470 -36602772 + THE1B LTR MaLR 1 364 0 3307 152 45 35 chr6 145812470 145812903 -36602339 + MER6A DNA MER2_type 159 604 -1 208 348 56 0 chr6 145812929 145813018 -36602224 + L2 LINE L2 3185 3278 -35 266 279 29 0 chr6 145814403 145814471 -36600771 + L3b LINE CR1 1511 1580 -3 729 232 134 13 chr6 145814558 145814782 -36600460 - MLT1J1 LTR MaLR -190 256 6 341 319 0 14 chr6 145814797 145814935 -36600307 + L1MC/D LINE L1 5342 5477 -2331 195 114 0 0 chr6 145816004 145816039 -36599203 + (TG)n Simple_repeat Simple_repeat 1 35 0 1957 126 46 3 chr6 145816337 145816622 -36598620 - AluSx SINE Alu -15 297 1 233 245 0 0 chr6 145816685 145816734 -36598508 - L2 LINE L2 0 3313 3265 * 1042 293 156 38 chr6 145816729 145816951 -36598291 - L2 LINE L2 -787 2527 2333 1853 132 50 0 chr6 145816951 145817231 -36598011 + AluSx SINE Alu 1 294 -18 1042 293 156 38 chr6 145817231 145818014 -36597228 - L2 LINE L2 -981 2333 1403 282 250 158 33 chr6 145818751 145818903 -36596339 - MER5A DNA MER1_type -1 188 18 222 325 17 77 chr6 145818874 145818991 -36596251 + L2 LINE L2 3159 3268 -4 * 770 229 80 0 chr6 145819041 145819216 -36596026 - MER3 DNA MER1_type 0 209 21 315 310 71 76 chr6 145819334 145819769 -36595473 + L2 LINE L2 2836 3268 -4 1872 120 65 0 chr6 145820110 145820385 -36594857 + AluSq SINE Alu 1 293 -20 252 0 0 0 chr6 145820692 145820720 -36594522 + (TC)n Simple_repeat Simple_repeat 1 28 0 242 310 0 20 chr6 145820853 145820953 -36594289 - MIR SINE MIR -36 226 129 1973 150 0 10 chr6 145821404 145821710 -36593532 - AluJb SINE Alu -9 303 1 1769 150 3 14 chr6 145823511 145823820 -36591422 - AluJb SINE Alu 0 306 1 385 364 103 5 chr6 145823853 145824048 -36591194 - MIR SINE MIR -29 233 20 766 239 9 59 chr6 145824312 145824393 -36590849 - MIR SINE MIR -27 235 152 2074 123 7 17 chr6 145824393 145824694 -36590548 - AluSq SINE Alu -15 298 1 766 239 9 59 chr6 145824694 145824834 -36590408 - MIR SINE MIR -110 152 25 2061 124 6 13 chr6 145825257 145825571 -36589671 + AluSx SINE Alu 1 312 0 198 0 0 0 chr6 145825628 145825650 -36589592 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 236 184 0 0 chr6 145826208 145826246 -36588996 - MIR SINE MIR -118 144 107 2469 76 0 0 chr6 145827287 145827591 -36587651 + AluSg SINE Alu 1 304 -6 1298 271 108 24 chr6 145828946 145829845 -36585397 - L2 LINE L2 0 3313 2334 747 283 24 10 chr6 145829846 145830051 -36585191 + MIR SINE MIR 52 259 -3 1952 146 3 10 chr6 145830727 145831036 -36584206 + AluSx SINE Alu 1 307 -5 655 180 0 0 chr6 145831056 145831167 -36584075 + FLAM_A SINE Alu 28 138 -4 229 229 93 61 chr6 145831167 145831292 -36583950 + MIR SINE MIR 46 182 -61 26 0 0 0 chr6 145831808 145831834 -36583408 + AT_rich Low_complexity Low_complexity 1 26 0 2212 119 10 6 chr6 145832043 145832380 -36582862 + AluJb SINE Alu 1 338 0 3810 161 41 45 chr6 145832804 145833531 -36581711 + LTR8A LTR ERV1 4 727 0 238 213 0 0 chr6 145833943 145833990 -36581252 - L2 LINE L2 0 3313 3267 2251 165 53 65 chr6 145834752 145835225 -36580017 + LTR24 LTR ERV1 1 467 0 726 198 136 0 chr6 145835691 145835853 -36579389 - MIR SINE MIR -31 231 48 1100 157 98 118 chr6 145835853 145836191 -36579051 + MER110A LTR ERV1 2 332 -136 1725 167 82 90 chr6 145836363 145836861 -36578381 - LTR54B LTR ERV1 -2 496 3 31 44 0 0 chr6 145837153 145837198 -36578044 + AT_rich Low_complexity Low_complexity 1 45 0 2274 108 0 7 chr6 145837517 145837823 -36577419 - AluSq SINE Alu -9 304 1 357 24 0 0 chr6 145837919 145837961 -36577281 + (ATG)n Simple_repeat Simple_repeat 2 43 0 1851 139 40 0 chr6 145837961 145838234 -36577008 - AluJb SINE Alu -28 284 1 483 265 170 0 chr6 145838698 145838845 -36576397 + MER5B DNA MER1_type 1 172 -6 2359 90 7 0 chr6 145838869 145839170 -36576072 + AluSx SINE Alu 1 303 -9 317 339 9 9 chr6 145840350 145840462 -36574780 - L2 LINE L2 -228 3085 2974 1219 250 41 102 chr6 145840493 145840632 -36574610 - L2 LINE L2 -459 2855 2709 1218 139 0 16 chr6 145840632 145840819 -36574423 - L1MC1 LINE L1 0 6333 6150 1219 250 41 102 chr6 145840819 145841204 -36574038 - L2 LINE L2 -605 2709 2302 2077 149 0 0 chr6 145841204 145841512 -36573730 + AluSx SINE Alu 1 308 -4 762 143 7 50 chr6 145841522 145841662 -36573580 + L1PA16 LINE L1 6033 6166 0 1219 250 41 102 chr6 145841662 145841764 -36573478 - L2 LINE L2 -1021 2293 2256 408 18 0 70 chr6 145842223 145842280 -36572962 + MADE1 DNA Mariner 2 54 -26 5214 181 79 26 chr6 145842281 145843022 -36572220 - L1MCa LINE L1 -5175 1251 425 2465 73 0 0 chr6 145843022 145843322 -36571920 + AluY SINE Alu 2 301 -10 5214 181 79 26 chr6 145843322 145843748 -36571494 - L1MCa LINE L1 -6001 425 23 2186 125 0 3 chr6 145845127 145845423 -36569819 + AluSx SINE Alu 1 295 -17 302 309 136 24 chr6 145845709 145846084 -36569158 + L1M4 LINE L1 2679 3095 -3051 561 267 67 31 chr6 145846119 145846344 -36568898 + L1MEd LINE L1 13 245 -5874 1041 243 10 0 chr6 145846362 145846568 -36568674 - MER58A DNA MER1_type -15 209 2 899 285 142 36 chr6 145846573 145847188 -36568054 + L1MEd LINE L1 243 922 -5197 1907 169 38 41 chr6 145848692 145849058 -36566184 + MLT1A1 LTR MaLR 1 365 0 302 286 95 16 chr6 145849084 145849210 -36566032 + L2 LINE L2 3137 3272 0 1709 184 3 3 chr6 145849334 145849627 -36565615 - AluJo SINE Alu -18 294 2 660 157 122 17 chr6 145849629 145849744 -36565498 - FLAM_A SINE Alu -6 127 1 2364 79 0 0 chr6 145850680 145850970 -36564272 - AluY SINE Alu -21 290 1 248 33 0 0 chr6 145850980 145851058 -36564184 - AluSq SINE Alu 0 324 247 1553 120 5 0 chr6 145851058 145851267 -36563975 - AluSq SINE Alu -103 210 1 478 242 32 54 chr6 145851268 145851454 -36563788 + L2 LINE L2 3023 3204 -109 626 157 0 0 chr6 145851456 145851545 -36563697 + 5S rRNA rRNA 1 89 -32 356 274 9 28 chr6 145851546 145851652 -36563590 + L2 LINE L2 3196 3299 -14 248 203 0 34 chr6 145852049 145852064 -36563178 + LTR49 LTR ERV1 489 503 -92 1520 184 104 0 chr6 145852064 145852342 -36562900 + AluSg SINE Alu 1 307 -3 248 203 0 34 chr6 145852342 145852385 -36562857 + LTR49 LTR ERV1 503 545 -50 810 103 0 0 chr6 145852725 145852832 -36562410 - AluJb SINE Alu -8 304 198 314 50 0 0 chr6 145852896 145852936 -36562306 + MADE1 DNA Mariner 1 40 -40 2079 134 14 0 chr6 145853455 145853745 -36561497 + AluSx SINE Alu 1 294 -18 22 56 0 0 chr6 145854069 145854105 -36561137 + AT_rich Low_complexity Low_complexity 1 36 0 271 322 40 86 chr6 145854288 145854333 -36560909 - MIR3 SINE MIR -14 194 148 2186 121 3 0 chr6 145854333 145854631 -36560611 + AluSx SINE Alu 1 299 -13 198 71 0 0 chr6 145854631 145854659 -36560583 + (TA)n Simple_repeat Simple_repeat 2 29 0 271 322 40 86 chr6 145854659 145854786 -36560456 - MIR3 SINE MIR -58 150 29 2071 123 43 10 chr6 145855782 145856083 -36559159 - AluSx SINE Alu -1 311 1 1271 141 5 15 chr6 145856092 145856298 -36558944 - AluSq SINE Alu -4 309 106 1338 154 75 75 chr6 145856823 145857115 -36558127 + AluJo SINE Alu 1 292 -20 23 0 0 0 chr6 145857116 145857139 -36558103 + AT_rich Low_complexity Low_complexity 1 23 0 1977 184 37 6 chr6 145857301 145857655 -36557587 + MLT1A1 LTR MaLR 1 365 0 946 132 0 0 chr6 145857877 145858013 -36557229 + FLAM_C SINE Alu 1 136 -7 325 317 12 0 chr6 145859144 145859226 -36556016 - L2 LINE L2 0 3272 3190 291 320 69 29 chr6 145859566 145859741 -36555501 + MIR SINE MIR 7 188 -74 337 246 35 61 chr6 145860286 145860400 -36554842 - MER5B DNA MER1_type -66 112 2 23 33 0 0 chr6 145860602 145860632 -36554610 + AT_rich Low_complexity Low_complexity 1 30 0 460 337 47 84 chr6 145861404 145861421 -36553821 + L2 LINE L2 2909 2925 -347 848 236 77 5 chr6 145861421 145861629 -36553613 - MER58A DNA MER1_type 0 224 2 460 337 47 84 chr6 145861629 145861970 -36553272 + L2 LINE L2 2925 3254 -18 25 0 0 0 chr6 145862719 145862744 -36552498 + AT_rich Low_complexity Low_complexity 1 25 0 1959 131 3 0 chr6 145862923 145863312 -36551930 + AluSq SINE Alu 1 390 0 21 0 0 0 chr6 145865115 145865136 -36550106 + AT_rich Low_complexity Low_complexity 1 21 0 316 285 11 18 chr6 145865810 145866004 -36549238 + MLT1L LTR MaLR 1 222 -393 1717 148 0 15 chr6 145866186 145866449 -36548793 - AluJo SINE Alu -53 259 1 528 331 45 16 chr6 145868455 145868700 -36546542 - MIR SINE MIR -9 253 2 270 196 23 150 chr6 145870126 145870180 -36545062 - MER5A DNA MER1_type -70 119 90 2378 101 0 0 chr6 145870180 145870486 -36544756 - AluSx SINE Alu -6 306 1 270 196 23 150 chr6 145870486 145870564 -36544678 - MER5A DNA MER1_type -99 90 4 312 213 168 90 chr6 145870658 145870813 -36544429 + MER5B DNA MER1_type 2 168 -10 637 278 136 0 chr6 145870963 145871161 -36544081 - MIR SINE MIR -5 257 33 648 284 52 60 chr6 145871172 145871422 -36543820 + L2 LINE L2 3066 3313 0 302 276 103 64 chr6 145875464 145875650 -36539592 - L1MC/D LINE L1 -810 5336 5294 2145 138 3 0 chr6 145875650 145875962 -36539280 - AluSp SINE Alu 0 313 1 302 276 103 64 chr6 145875962 145876260 -36538982 - L1MC/D LINE L1 -852 5294 5009 270 0 0 0 chr6 145876924 145876954 -36538288 + (TG)n Simple_repeat Simple_repeat 2 31 0 2140 101 10 7 chr6 145877840 145878138 -36537104 - AluSx SINE Alu -13 299 1 452 225 54 8 chr6 145878138 145878267 -36536975 - MIR SINE MIR -52 210 76 2253 112 3 6 chr6 145879519 145879832 -36535410 - AluSx SINE Alu 0 312 1 1612 199 60 0 chr6 145880756 145881108 -36534134 + L1MB4 LINE L1 5807 6179 -1 760 175 0 8 chr6 145881487 145881613 -36533629 + FLAM_C SINE Alu 2 126 -7 350 252 41 0 chr6 145881669 145881792 -36533450 - L1MC/D LINE L1 -1375 4771 4644 852 222 90 81 chr6 145881906 145882338 -36532904 + LTR37B LTR ERV1 8 443 -25 326 82 33 0 chr6 145882333 145882394 -36532848 + LTR37A LTR ERV1 356 418 -8 * 1540 172 52 17 chr6 145882611 145882902 -36532340 - AluJb SINE Alu -11 301 1 786 157 22 0 chr6 145882923 145883057 -36532185 - AluJo SINE Alu -175 137 1 547 278 129 41 chr6 145883212 145883560 -36531682 - L1ME LINE L1 -366 5804 5423 555 153 0 0 chr6 145883710 145883808 -36531434 + CT-rich Low_complexity Low_complexity 1 98 0 412 303 96 11 chr6 145884267 145884445 -36530797 - MIR SINE MIR -14 248 56 443 214 173 90 chr6 145884506 145884823 -36530419 - L1MC4 LINE L1 -75 7967 7611 2228 109 7 10 chr6 145884823 145885127 -36530115 - AluSx SINE Alu -9 303 1 443 214 173 90 chr6 145885127 145885197 -36530045 - L1MC4 LINE L1 -431 7611 7548 3588 119 15 10 chr6 145885212 145885733 -36529509 + MER1A DNA MER1_type 4 527 0 280 251 72 128 chr6 145885836 145885891 -36529351 - L1MC4 LINE L1 -552 7490 7433 1758 132 90 17 chr6 145885891 145886179 -36529063 + AluSx SINE Alu 1 309 -3 280 251 72 128 chr6 145886179 145886442 -36528800 - L1MC4 LINE L1 -609 7433 7190 2189 114 3 0 chr6 145886565 145886862 -36528380 - AluSq SINE Alu -15 298 1 24 85 0 0 chr6 145887798 145887857 -36527385 + AT_rich Low_complexity Low_complexity 1 59 0 838 226 0 0 chr6 145888655 145888823 -36526419 + AluJb SINE Alu 137 304 -8 1322 171 23 9 chr6 145888861 145889077 -36526165 + AluJb SINE Alu 79 297 -15 1599 182 21 24 chr6 145889317 145889608 -36525634 + AluJo SINE Alu 1 290 -22 324 0 0 0 chr6 145891101 145891137 -36524105 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 82 0 0 chr6 145891877 145891926 -36523316 + AT_rich Low_complexity Low_complexity 1 49 0 181 257 0 0 chr6 145892449 145892484 -36522758 - L2 LINE L2 -10 3262 3228 316 329 111 57 chr6 145892745 145892826 -36522416 + L1ME4a LINE L1 5512 5587 -534 2046 117 0 38 chr6 145892826 145893142 -36522100 - AluSp SINE Alu -9 304 1 316 329 111 57 chr6 145893142 145893394 -36521848 + L1ME4a LINE L1 5587 5863 -258 1978 141 40 0 chr6 145893936 145894234 -36521008 + AluSx SINE Alu 1 310 -2 1294 271 120 45 chr6 145894425 145895946 -36519296 + L1MCc LINE L1 1171 3090 -3851 1386 144 0 17 chr6 145895946 145896182 -36519060 + MER46A DNA MER2_type 1 232 -4 1294 271 120 45 chr6 145896182 145896591 -36518651 + L1MCc LINE L1 3090 3467 -3474 1192 251 116 49 chr6 145896596 145897310 -36517932 + L1MCc LINE L1 3518 4279 -2662 447 327 0 32 chr6 145897322 145897478 -36517764 + L2 LINE L2 3162 3312 -1 2434 100 0 0 chr6 145897996 145898306 -36516936 - AluSg SINE Alu 0 310 1 2473 79 0 0 chr6 145898349 145898652 -36516590 - AluY SINE Alu -7 304 2 583 232 147 58 chr6 145898701 145898925 -36516317 - MLT1I LTR MaLR -26 383 140 296 342 156 10 chr6 145899093 145899292 -36515950 - MIR SINE MIR -15 247 20 2262 111 0 0 chr6 145899944 145900242 -36515000 - AluSx SINE Alu -14 298 1 1002 306 43 18 chr6 145900931 145901000 -36514242 - L1ME4a LINE L1 -224 5897 5831 2684 160 23 40 chr6 145901000 145901267 -36513975 + L1MB3 LINE L1 5627 5897 -286 198 0 0 0 chr6 145901267 145901289 -36513953 + (CA)n Simple_repeat Simple_repeat 1 22 0 2684 160 23 40 chr6 145901289 145901576 -36513666 + L1MB3 LINE L1 5897 6172 -11 1002 306 43 18 chr6 145901576 145901951 -36513291 - L1ME4a LINE L1 -290 5831 5442 1651 192 7 3 chr6 145902568 145902865 -36512377 + AluJb SINE Alu 1 298 -14 2313 65 0 11 chr6 145902869 145903147 -36512095 + AluY SINE Alu 19 293 -18 196 200 0 22 chr6 145904339 145904384 -36510858 - MIR SINE MIR -47 215 172 284 297 110 49 chr6 145904401 145904842 -36510400 + MLT1L LTR MaLR 143 585 -3 195 301 0 86 chr6 145905111 145905168 -36510074 + MIR SINE MIR 97 145 -117 1592 165 50 34 chr6 145905168 145905465 -36509777 + AluJo SINE Alu 3 304 -8 195 301 0 86 chr6 145905465 145905500 -36509742 + MIR SINE MIR 145 181 -81 1859 125 14 17 chr6 145906250 145906538 -36508704 + AluJo SINE Alu 1 287 -25 22 0 0 0 chr6 145906732 145906754 -36508488 + AT_rich Low_complexity Low_complexity 1 22 0 10329 86 8 2 chr6 145907461 145909649 -36505593 + L1PA7 LINE L1 3962 6154 0 1763 194 0 0 chr6 145910234 145910528 -36504714 + AluJo SINE Alu 1 294 -18 1736 188 53 13 chr6 145910692 145911069 -36504173 + MSTD LTR MaLR 1 392 -4 21 0 0 0 chr6 145911306 145911327 -36503915 + AT_rich Low_complexity Low_complexity 1 21 0 297 277 133 14 chr6 145911575 145911948 -36503294 - L1ME LINE L1 -502 5594 5170 1290 278 68 47 chr6 145911976 145912545 -36502697 - L1ME LINE L1 -4572 1689 1090 2127 114 3 0 chr6 145912545 145912842 -36502400 + AluSx SINE Alu 1 298 -14 1290 278 68 47 chr6 145912842 145913248 -36501994 - L1ME LINE L1 -5171 1090 694 697 218 0 15 chr6 145913288 145913421 -36501821 - FLAM_A SINE Alu -1 132 2 491 306 99 29 chr6 145913571 145913870 -36501372 - L1ME LINE L1 -5737 333 10 1405 152 0 5 chr6 145913973 145914190 -36501052 + AluJb SINE Alu 85 300 -12 528 300 105 38 chr6 145914190 145914773 -36500469 - L1M4 LINE L1 -1059 5087 4466 209 236 57 0 chr6 145914780 145914903 -36500339 + (TTATA)n Simple_repeat Simple_repeat 2 131 0 1952 120 7 0 chr6 145914929 145915230 -36500012 + AluSx SINE Alu 6 308 0 1242 140 0 26 chr6 145916120 145916348 -36498894 + L1MB8 LINE L1 5855 6076 -102 2016 136 0 3 chr6 145916360 145916655 -36498587 - AluSx SINE Alu -18 294 1 2198 136 3 0 chr6 145918950 145919260 -36495982 - AluSx SINE Alu -1 311 1 731 306 103 18 chr6 145920326 145920829 -36494413 + L2 LINE L2 2368 2913 -401 1790 131 77 0 chr6 145921028 145921288 -36493954 + AluSx SINE Alu 1 280 -32 235 167 14 28 chr6 145921291 145921363 -36493879 + GA-rich Low_complexity Low_complexity 4 74 0 217 331 186 21 chr6 145922249 145922394 -36492848 - MIR SINE MIR -82 180 12 2094 142 3 0 chr6 145923908 145924211 -36491031 - AluSx SINE Alu -8 304 1 2280 121 0 0 chr6 145925755 145926062 -36489180 - AluSx SINE Alu -5 307 1 1737 162 3 37 chr6 145926525 145926822 -36488420 - AluJo SINE Alu -25 287 1 195 42 0 0 chr6 145926882 145926906 -36488336 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2111 110 10 27 chr6 145927192 145927492 -36487750 + AluSx SINE Alu 1 295 -17 309 290 60 0 chr6 145927518 145927618 -36487624 + MIR SINE MIR 155 260 -2 1722 174 0 27 chr6 145928082 145928381 -36486861 + AluJb SINE Alu 2 292 -20 521 258 48 46 chr6 145928955 145929293 -36485949 + L1MC4a LINE L1 5684 5801 -320 2131 127 0 7 chr6 145929473 145929772 -36485470 - AluJb SINE Alu -15 297 1 269 331 38 45 chr6 145930345 145930478 -36484764 + L2 LINE L2 3141 3272 0 187 280 213 0 chr6 145930546 145930621 -36484621 + MIR3 SINE MIR 96 186 -22 976 148 19 6 chr6 145931003 145931165 -36484077 + FRAM SINE Alu 1 163 -13 223 353 101 8 chr6 145932467 145932586 -36482656 + MIR3 SINE MIR 11 140 -68 1725 180 10 6 chr6 145932599 145932910 -36482332 + AluJb SINE Alu 1 312 0 1803 125 66 31 chr6 145933392 145933680 -36481562 - AluJb SINE Alu -14 298 1 2317 117 36 25 chr6 145933880 145934240 -36481002 + THE1B LTR MaLR 1 364 0 185 222 0 0 chr6 145935148 145935184 -36480058 - L2 LINE L2 -9 3263 3228 1699 168 0 0 chr6 145935711 145936003 -36479239 - L1MB3 LINE L1 -318 5865 5574 312 314 79 7 chr6 145936822 145936962 -36478280 - L1ME3A LINE L1 -239 5931 5782 2272 107 10 0 chr6 145936965 145937274 -36477968 + AluSx SINE Alu 1 312 0 234 299 94 3 chr6 145937330 145937540 -36477702 - L1ME3A LINE L1 -532 5589 5497 1478 102 0 0 chr6 145938092 145938279 -36476963 + AluSx SINE Alu 1 187 -125 21 36 0 0 chr6 145938556 145938584 -36476658 + AT_rich Low_complexity Low_complexity 1 28 0 388 314 93 12 chr6 145939238 145939410 -36475832 + MIR SINE MIR 1 186 -76 1809 140 29 0 chr6 145939422 145939694 -36475548 - AluSx SINE Alu -8 304 25 213 234 106 0 chr6 145939729 145939776 -36475466 + MIR SINE MIR 196 247 -15 1856 156 0 0 chr6 145940115 145940390 -36474852 + AluJb SINE Alu 6 280 -32 189 94 0 0 chr6 145940390 145940422 -36474820 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 212 182 204 0 chr6 145940707 145940751 -36474491 + L2 LINE L2 3215 3267 -5 1812 179 3 7 chr6 145941999 145942295 -36472947 - AluJo SINE Alu -17 295 1 738 183 0 8 chr6 145942953 145943084 -36472158 + FLAM_A SINE Alu 1 130 -3 26 50 0 0 chr6 145943084 145943124 -36472118 + AT_rich Low_complexity Low_complexity 1 40 0 557 284 87 34 chr6 145943196 145943551 -36471691 + L1ME4a LINE L1 4068 4441 -1705 374 248 165 67 chr6 145943746 145943880 -36471362 + L1ME4a LINE L1 5408 5527 -594 1842 159 3 41 chr6 145943880 145944200 -36471042 - AluJo SINE Alu 0 312 5 374 248 165 67 chr6 145944200 145944319 -36470923 + L1ME4a LINE L1 5527 5686 -435 21 36 0 0 chr6 145944329 145944357 -36470885 + AT_rich Low_complexity Low_complexity 1 28 0 207 241 19 0 chr6 145944388 145944442 -36470800 + (TA)n Simple_repeat Simple_repeat 1 55 0 265 258 69 31 chr6 145944638 145944797 -36470445 + L1ME4a LINE L1 5946 6110 -11 2260 114 3 0 chr6 145945465 145945764 -36469478 - AluSx SINE Alu -12 300 1 3636 214 83 43 chr6 145945984 145947546 -36467696 - L1MC3 LINE L1 -743 5403 4509 1995 141 0 0 chr6 145947546 145947823 -36467419 + AluSx SINE Alu 20 296 -16 3636 214 83 43 chr6 145947823 145948229 -36467013 - L1MC3 LINE L1 -1637 4509 4121 21 71 0 0 chr6 145948375 145948417 -36466825 + AT_rich Low_complexity Low_complexity 1 42 0 637 239 183 0 chr6 145948487 145948684 -36466558 - MIR SINE MIR -10 252 20 2458 59 0 7 chr6 145948895 145949200 -36466042 + AluY SINE Alu 1 303 -8 216 308 48 10 chr6 145950127 145950231 -36465011 + GA-rich Low_complexity Low_complexity 4 111 0 429 293 40 27 chr6 145950499 145950649 -36464593 + MIR SINE MIR 42 193 -69 1614 153 3 83 chr6 145951201 145951514 -36463728 - AluJo SINE Alu -24 288 1 2340 92 0 3 chr6 145951656 145951960 -36463282 + AluY SINE Alu 1 303 -8 680 237 154 24 chr6 145952044 145952448 -36462794 + L1ME3A LINE L1 5620 6100 -70 592 212 228 0 chr6 145952494 145952678 -36462564 - MLT1D LTR MaLR 0 505 280 611 198 72 12 chr6 145952704 145952871 -36462371 - MLT1D LTR MaLR -309 196 20 2107 139 0 0 chr6 145953361 145953671 -36461571 + AluSx SINE Alu 3 312 0 1819 171 10 3 chr6 145954222 145954514 -36460728 - AluJb SINE Alu -18 294 1 1816 134 0 55 chr6 145954844 145955173 -36460069 - L1MC1 LINE L1 -5 6328 6018 2138 132 0 10 chr6 145955351 145955661 -36459581 + AluSx SINE Alu 1 307 -5 686 201 107 45 chr6 145956436 145956745 -36458497 + L1MC5 LINE L1 7392 7719 -242 1850 159 7 3 chr6 145956764 145957065 -36458177 + AluJo SINE Alu 1 302 -10 1568 157 57 32 chr6 145957920 145958200 -36457042 - AluJo SINE Alu -25 287 1 255 125 0 0 chr6 145958234 145958274 -36456968 + (TA)n Simple_repeat Simple_repeat 1 40 0 1901 120 17 7 chr6 145958322 145958622 -36456620 + L1PA16 LINE L1 5859 6161 -5 211 284 0 63 chr6 145960056 145960151 -36455091 - L2 LINE L2 -2 3311 3223 225 0 0 0 chr6 145960159 145960184 -36455058 + (CA)n Simple_repeat Simple_repeat 1 25 0 247 252 87 39 chr6 145960189 145960292 -36454950 - L2 LINE L2 -85 3228 3121 5254 218 25 39 chr6 145962695 145964124 -36451118 + L1MC1 LINE L1 3989 5397 -749 510 156 0 0 chr6 145964128 145964205 -36451037 + AluJ/FLAM SINE Alu 2 78 -234 693 169 32 8 chr6 145964208 145964332 -36450910 + AluJo/FRAM SINE Alu 186 312 0 5242 155 34 19 chr6 145964332 145964385 -36450857 + L1MC1 LINE L1 5390 5441 -892 2485 75 0 0 chr6 145964385 145964693 -36450549 + AluY SINE Alu 1 308 -3 5242 155 34 19 chr6 145964693 145965550 -36449692 + L1MC1 LINE L1 5441 6314 -19 312 200 0 0 chr6 145965550 145965615 -36449627 + (TA)n Simple_repeat Simple_repeat 1 65 0 799 222 48 0 chr6 145965943 145966110 -36449132 - MER5B DNA MER1_type -1 177 3 198 0 0 0 chr6 145966360 145966382 -36448860 + (T)n Simple_repeat Simple_repeat 1 22 0 404 250 0 37 chr6 145967203 145967311 -36447931 - L2 LINE L2 -643 2671 2568 304 252 52 109 chr6 145968096 145968161 -36447081 - L3 LINE CR1 -191 1386 1319 1398 172 153 0 chr6 145968161 145968422 -36446820 - AluJo SINE Alu -11 301 1 304 252 52 109 chr6 145968422 145968566 -36446676 - L3 LINE CR1 -258 1319 1189 357 236 203 14 chr6 145968881 145969029 -36446213 - MER5A DNA MER1_type -5 184 9 1053 47 79 0 chr6 145969529 145969656 -36445586 - MER85 DNA T2_type -2 137 1 417 172 31 0 chr6 145970274 145970338 -36444904 + AluSx SINE Alu 2 67 -245 2005 89 0 0 chr6 145970358 145970606 -36444636 + AluSx SINE Alu 52 299 -13 2229 118 0 0 chr6 145971297 145971594 -36443648 - AluSx SINE Alu -15 297 1 269 241 0 0 chr6 145973281 145973339 -36441903 + CT-rich Low_complexity Low_complexity 3 60 0 407 285 69 102 chr6 145973339 145973625 -36441617 - L2 LINE L2 0 3272 3003 2271 106 0 0 chr6 145973625 145973928 -36441314 - AluSx SINE Alu -9 303 1 407 285 69 102 chr6 145973928 145974073 -36441169 - L2 LINE L2 -269 3003 2855 285 302 60 43 chr6 145974114 145974346 -36440896 + L2 LINE L2 2946 3181 -132 1945 141 17 0 chr6 145975209 145975508 -36439734 + AluSx SINE Alu 1 304 -8 1747 171 6 19 chr6 145975513 145975829 -36439413 + AluJb SINE Alu 1 312 0 223 293 67 67 chr6 145976280 145976550 -36438692 + L2 LINE L2 2661 2930 -384 1618 132 100 36 chr6 145976646 145976926 -36438316 + AluJb SINE Alu 6 303 -9 1406 178 4 41 chr6 145977275 145977545 -36437697 + AluJb SINE Alu 35 294 -18 602 84 21 21 chr6 145977663 145977758 -36437484 - AluSg/x SINE Alu -10 302 208 212 338 117 19 chr6 145977816 145977970 -36437272 - L2 LINE L2 -1285 2029 1861 2269 101 13 0 chr6 145978792 145979100 -36436142 - AluSq SINE Alu -1 312 1 1955 144 17 3 chr6 145980107 145980405 -36434837 + AluSx SINE Alu 1 302 -10 200 204 0 0 chr6 145980443 145980487 -36434755 - L2 LINE L2 0 3313 3270 252 0 0 0 chr6 145980671 145980699 -36434543 + (TA)n Simple_repeat Simple_repeat 1 28 0 1609 170 59 7 chr6 145980702 145980973 -36434269 - AluJb SINE Alu -27 285 1 362 217 90 36 chr6 145980994 145981160 -36434082 - LTR7 LTR ERV1 -38 412 238 1622 173 31 76 chr6 145981750 145981904 -36433338 + MLT1A1 LTR MaLR 1 160 -205 1949 132 4 0 chr6 145981904 145982209 -36433033 + AluSx SINE Alu 1 306 0 1622 173 31 76 chr6 145982209 145982435 -36432807 + MLT1A1 LTR MaLR 160 365 0 22 0 0 0 chr6 145982502 145982524 -36432718 + AT_rich Low_complexity Low_complexity 1 22 0 199 0 31 31 chr6 145983429 145983461 -36431781 + (GAGAA)n Simple_repeat Simple_repeat 3 34 0 1357 130 29 5 chr6 145984195 145984440 -36430802 - AluJb SINE Alu 0 320 71 2448 141 107 0 chr6 145984916 145985300 -36429942 + MSTC LTR MaLR 1 425 -3 885 239 117 85 chr6 145985374 145985897 -36429345 + MLT1H1 LTR MaLR 3 554 -1 181 340 0 0 chr6 145986366 145986416 -36428826 + L3 LINE CR1 1501 1550 -27 225 268 0 42 chr6 145986429 145986500 -36428742 - MIR SINE MIR -29 233 166 670 250 7 26 chr6 145986519 145986671 -36428571 - FRAM SINE Alu -21 155 7 2317 88 0 52 chr6 145986686 145987045 -36428197 - AluSx SINE Alu 0 343 2 388 250 121 17 chr6 145987049 145987165 -36428077 - MIR SINE MIR -106 156 29 180 315 0 19 chr6 145988219 145988273 -36426969 + L3 LINE CR1 1501 1553 -24 324 215 34 13 chr6 145988499 145988648 -36426594 + GA-rich Low_complexity Low_complexity 3 154 0 4826 161 33 23 chr6 145988885 145989848 -36425394 + L1MB7 LINE L1 4615 5587 -597 2154 121 3 10 chr6 145989848 145990155 -36425087 + AluSq SINE Alu 1 305 -8 4826 161 33 23 chr6 145990155 145990740 -36424502 + L1MB7 LINE L1 5587 6165 -19 22 0 0 0 chr6 145990740 145990762 -36424480 + AT_rich Low_complexity Low_complexity 1 22 0 750 105 15 15 chr6 145990939 145991072 -36424170 + (GGAA)n Simple_repeat Simple_repeat 2 134 0 181 214 54 18 chr6 145991069 145991181 -36424061 + GA-rich Low_complexity Low_complexity 6 121 0 * 188 0 74 0 chr6 145991333 145991360 -36423882 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 25 51 0 0 chr6 145991787 145991826 -36423416 + AT_rich Low_complexity Low_complexity 1 39 0 879 194 6 6 chr6 145991827 145991992 -36423250 + FRAM SINE Alu 1 165 -11 24 0 0 0 chr6 145992116 145992140 -36423102 + AT_rich Low_complexity Low_complexity 1 24 0 235 257 105 9 chr6 145992279 145992384 -36422858 - L2 LINE L2 -974 2340 2226 195 42 0 0 chr6 145992485 145992509 -36422733 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2604 169 38 21 chr6 145992534 145993012 -36422230 + MER66B LTR ERV1 1 486 0 2021 109 36 26 chr6 145993131 145993433 -36421809 - AluSx SINE Alu -7 305 1 1895 130 0 40 chr6 145994876 145995176 -36420066 - AluSx SINE Alu -24 288 1 260 182 0 0 chr6 145995279 145995323 -36419919 + MIR SINE MIR 218 261 -1 1231 132 20 29 chr6 145995468 145995672 -36419570 + AluJb SINE Alu 84 285 -27 184 353 0 0 chr6 145995721 145995772 -36419470 + L2 LINE L2 3128 3178 -94 270 257 191 0 chr6 145995955 145996060 -36419182 - L2 LINE L2 0 3313 3189 1773 163 7 3 chr6 145997452 145997761 -36417481 - AluJb SINE Alu 0 310 1 464 146 37 24 chr6 145998574 145998656 -36416586 - AluJ/FRAM SINE Alu -13 299 217 21 0 0 0 chr6 145999250 145999271 -36415971 + AT_rich Low_complexity Low_complexity 1 21 0 365 290 20 75 chr6 145999893 146000093 -36415149 + MIR SINE MIR 1 189 -73 1336 179 120 25 chr6 146000094 146000368 -36414874 + AluJb SINE Alu 1 300 -2 505 154 39 0 chr6 146000383 146000507 -36414735 + AluSg/x SINE Alu 201 327 0 1229 140 0 0 chr6 146000507 146000678 -36414564 + AluJb SINE Alu 131 301 -11 620 215 36 67 chr6 146001395 146001780 -36413462 + LTR37B LTR ERV1 89 464 -4 876 146 0 29 chr6 146003150 146003287 -36411955 + AluJo SINE Alu 1 133 -169 998 205 0 0 chr6 146003350 146003516 -36411726 + AluJo SINE Alu 137 302 0 1588 134 112 11 chr6 146004238 146004507 -36410735 + AluJb SINE Alu 1 296 -16 180 77 0 0 chr6 146006107 146006133 -36409109 + (TC)n Simple_repeat Simple_repeat 1 26 0 2294 93 0 16 chr6 146007308 146007619 -36407623 + AluSq SINE Alu 1 306 -7 1021 136 0 0 chr6 146008011 146008158 -36407084 - AluJb SINE Alu -2 310 164 845 152 0 8 chr6 146008298 146008430 -36406812 + FLAM_C SINE Alu 2 132 -1 234 234 234 32 chr6 146008671 146008765 -36406477 - MIR3 SINE MIR -9 199 87 221 319 79 41 chr6 146008906 146009048 -36406194 - MIR3 SINE MIR -54 154 5 1139 198 95 8 chr6 146009085 146009338 -36405904 + MER58 DNA MER1_type 1 275 -66 2937 145 38 9 chr6 146009341 146010159 -36405083 + L1PA16 LINE L1 4824 5684 -482 477 139 0 0 chr6 146010160 146010232 -36405010 + L1PA16 LINE L1 5897 5968 -198 1991 124 6 43 chr6 146010232 146010555 -36404687 + AluJo SINE Alu 1 311 -1 2338 101 0 16 chr6 146010892 146011208 -36404034 - AluSx SINE Alu -1 311 1 342 282 147 6 chr6 146011210 146011366 -36403876 + MIR SINE MIR 23 200 -62 26 30 0 0 chr6 146013481 146013514 -36401728 + GC_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr6 146013758 146013786 -36401456 + (CCGCG)n Simple_repeat Simple_repeat 4 31 0 2150 83 3 51 chr6 146015013 146015325 -36399917 - AluSq SINE Alu -16 297 1 2396 80 0 3 chr6 146015395 146015697 -36399545 + AluSx SINE Alu 3 303 -9 572 113 12 12 chr6 146015724 146015804 -36399438 + FLAM SINE Alu 47 126 -17 1008 150 39 6 chr6 146016661 146016841 -36398401 - Charlie1 DNA MER1_type -200 2561 2376 1267 133 79 0 chr6 146016984 146017187 -36398055 - L1PA16 LINE L1 -9 6157 5939 928 161 186 5 chr6 146017187 146017386 -36397856 - MER21A LTR ERV1 -696 235 1 6074 210 34 20 chr6 146017386 146017888 -36397354 - L1 LINE L1 -952 5194 4700 216 0 0 0 chr6 146017888 146017912 -36397330 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6074 210 34 20 chr6 146017912 146018187 -36397055 - L1 LINE L1 -1446 4700 4430 231 36 0 0 chr6 146018187 146018215 -36397027 + (TG)n Simple_repeat Simple_repeat 1 28 0 6074 210 34 20 chr6 146018215 146018394 -36396848 - L1 LINE L1 -1716 4430 4255 1475 129 155 23 chr6 146018394 146018658 -36396584 + AluJb SINE Alu 6 304 -8 6074 210 34 20 chr6 146018658 146019160 -36396082 - L1 LINE L1 -1891 4255 3714 768 292 112 32 chr6 146019492 146019955 -36395287 + LTR33 LTR ERVL 14 513 -8 798 213 49 83 chr6 146020141 146020277 -36394965 + L1MC5 LINE L1 7076 7215 -746 1975 134 17 0 chr6 146020277 146020567 -36394675 - AluJb SINE Alu -17 295 1 798 213 49 83 chr6 146020567 146021167 -36394075 + L1MC5 LINE L1 7215 7925 -36 2207 100 6 26 chr6 146021278 146021589 -36393653 - AluSx SINE Alu -7 305 1 241 222 0 0 chr6 146021851 146021896 -36393346 + Zaphod DNA AcHobo 23 67 -3964 255 354 0 0 chr6 146021942 146022024 -36393218 + MER115 DNA AcHobo 150 231 -462 600 238 80 0 chr6 146022122 146022273 -36392969 + MER115 DNA AcHobo 459 621 -72 1349 208 20 27 chr6 146022273 146022566 -36392676 + AluJo SINE Alu 5 295 -17 621 185 38 25 chr6 146022574 146022731 -36392511 + L1M4 LINE L1 4118 4276 -1870 1178 219 124 70 chr6 146022750 146023267 -36391975 + L1M4 LINE L1 4564 5108 -1038 181 135 39 0 chr6 146023277 146023329 -36391913 + (TA)n Simple_repeat Simple_repeat 1 54 0 1671 149 0 4 chr6 146023405 146023654 -36391588 + AluSx SINE Alu 1 248 -64 385 179 11 11 chr6 146023676 146023771 -36391471 + GA-rich Low_complexity Low_complexity 3 97 0 2784 225 95 39 chr6 146023775 146024312 -36390930 + L1ME1 LINE L1 4524 5029 -1137 1548 123 134 26 chr6 146024312 146024581 -36390661 + AluSg1 SINE Alu 1 298 -11 2784 225 95 39 chr6 146024581 146025327 -36389915 + L1ME1 LINE L1 5029 5914 -252 1496 169 10 30 chr6 146025327 146025629 -36389613 - AluJo SINE Alu -5 307 12 2784 225 95 39 chr6 146025629 146025788 -36389454 + L1ME1 LINE L1 5914 6063 -103 357 44 0 0 chr6 146025788 146025833 -36389409 + L1MA5 LINE L1 6254 6298 -2 1566 184 35 0 chr6 146025838 146026126 -36389116 + AluJb SINE Alu 1 298 -14 1402 198 60 0 chr6 146026126 146026394 -36388848 - AluJb SINE Alu -28 284 1 1098 212 7 7 chr6 146026402 146026680 -36388562 + L1MC5 LINE L1 7660 7937 -24 1977 141 7 0 chr6 146026771 146027055 -36388187 - AluSx SINE Alu -26 286 1 281 207 116 96 chr6 146027148 146027346 -36387896 + L1M4 LINE L1 4641 4842 -1304 1892 146 14 0 chr6 146027632 146027920 -36387322 - AluSx SINE Alu -20 292 1 652 292 46 28 chr6 146028064 146028434 -36386808 - L1MC4 LINE L1 -824 7002 6619 605 15 0 0 chr6 146028754 146028821 -36386421 + THE1B LTR MaLR 2 68 -296 43 20 0 0 chr6 146028821 146028871 -36386371 + AT_rich Low_complexity Low_complexity 1 50 0 27 0 0 0 chr6 146029384 146029411 -36385831 + AT_rich Low_complexity Low_complexity 1 27 0 807 101 50 0 chr6 146029417 146029536 -36385706 + MLT2C2 LTR ERVL 1 125 -339 1907 165 3 19 chr6 146029536 146029737 -36385505 - AluJo SINE Alu -1 311 108 1757 143 32 108 chr6 146029737 146029782 -36385460 - THE1C LTR MaLR 0 375 328 2109 100 64 0 chr6 146029782 146030063 -36385179 + AluSx SINE Alu 1 299 -13 1757 143 32 108 chr6 146030063 146030085 -36385157 - THE1C LTR MaLR -47 328 306 2275 108 3 7 chr6 146030085 146030390 -36384852 - AluSp SINE Alu -9 304 1 1757 143 32 108 chr6 146030390 146030727 -36384515 - THE1C LTR MaLR -69 306 1 1907 165 3 19 chr6 146030727 146030841 -36384401 - AluJo SINE Alu -204 108 1 1229 128 104 5 chr6 146030841 146031052 -36384190 + MLT2C1 LTR ERVL 118 349 -48 1596 155 40 29 chr6 146031340 146031460 -36383782 + AluJb SINE Alu 1 118 -194 203 0 0 36 chr6 146031460 146031488 -36383754 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1596 155 40 29 chr6 146031488 146031645 -36383597 + AluJb SINE Alu 118 281 -31 2360 76 0 10 chr6 146031645 146031945 -36383297 - AluY SINE Alu -13 298 1 1916 154 0 0 chr6 146033085 146033370 -36381872 + AluSx SINE Alu 1 285 -27 249 174 0 22 chr6 146033404 146033450 -36381792 - MLT1K LTR MaLR -324 264 220 3449 119 34 60 chr6 146033737 146034350 -36380892 + MER4B LTR ERV1 1 597 -13 521 169 0 0 chr6 146034873 146034956 -36380286 - AluJ/FLAM SINE Alu -228 84 2 1022 212 73 15 chr6 146034957 146035231 -36380011 + Charlie2b DNA MER1_type 942 1231 -1551 792 164 45 164 chr6 146035266 146035482 -36379760 + Charlie2b DNA MER1_type 2127 2367 -495 2183 99 3 0 chr6 146035482 146035786 -36379456 - AluSx SINE Alu 0 305 1 792 164 45 164 chr6 146035786 146035816 -36379426 + Charlie2b DNA MER1_type 2367 2399 -463 1872 167 0 7 chr6 146035816 146036104 -36379138 + AluJb SINE Alu 1 286 -26 792 164 45 164 chr6 146036104 146036282 -36378960 + Charlie2b DNA MER1_type 2399 2502 -280 8120 23 0 2 chr6 146036299 146037517 -36377725 - L1PA3 LINE L1 -5 6150 4942 986 34 0 25 chr6 146037526 146037645 -36377597 - L1PA3 LINE L1 0 6155 6040 1781 242 84 43 chr6 146037714 146038275 -36376967 + MLT1E LTR MaLR 10 593 0 552 214 11 39 chr6 146038275 146038453 -36376789 + Charlie2b DNA MER1_type 2543 2715 -67 2154 127 0 37 chr6 146038572 146038896 -36376346 + AluSx SINE Alu 1 312 0 248 186 0 0 chr6 146039041 146039084 -36376158 - MIR SINE MIR -70 192 150 234 303 26 13 chr6 146039274 146039350 -36375892 - MIR SINE MIR -175 87 11 3700 164 29 10 chr6 146039493 146039900 -36375342 - L1MB3 LINE L1 -4 6179 5754 1965 176 51 14 chr6 146039900 146040252 -36374990 - MLT1A1 LTR MaLR 0 365 1 3700 164 29 10 chr6 146040252 146040471 -36374771 - L1MB3 LINE L1 -429 5754 5541 213 276 17 0 chr6 146040557 146040615 -36374627 - L3 LINE CR1 -5 1572 1514 2347 95 0 10 chr6 146041192 146041497 -36373745 - AluSx SINE Alu -10 302 1 268 382 64 0 chr6 146041666 146041776 -36373466 - L2 LINE L2 -14 3258 3142 356 211 183 10 chr6 146042170 146042274 -36372968 - L2 LINE L2 -3 3310 3189 542 115 81 0 chr6 146042305 146042392 -36372850 - AluS SINE Alu -217 95 2 308 352 79 22 chr6 146042392 146042659 -36372583 + L2 LINE L2 2615 2896 -418 474 149 53 21 chr6 146043034 146043128 -36372114 - MER94 DNA DNA -36 98 2 25 51 0 0 chr6 146043843 146043882 -36371360 + GC_rich Low_complexity Low_complexity 1 39 0 22 88 0 0 chr6 146044016 146044073 -36371169 + GC_rich Low_complexity Low_complexity 1 57 0 744 141 5 178 chr6 146044629 146044820 -36370422 + FRAM SINE Alu 1 158 -8 2369 67 3 0 chr6 146044831 146045115 -36370127 + AluSp SINE Alu 7 291 -22 1828 157 16 19 chr6 146045406 146045719 -36369523 - AluJo SINE Alu 0 312 1 1391 211 41 20 chr6 146046628 146046755 -36368487 + AluJo SINE Alu 2 125 -177 2067 112 7 7 chr6 146046755 146047049 -36368193 - AluSx SINE Alu -18 294 1 1391 211 41 20 chr6 146047049 146047215 -36368027 + AluJo SINE Alu 125 301 -1 23 33 0 0 chr6 146047243 146047273 -36367969 + AT_rich Low_complexity Low_complexity 1 30 0 251 237 17 0 chr6 146048364 146048423 -36366819 + L2 LINE L2 3213 3272 0 408 55 0 0 chr6 146048711 146048766 -36366476 + (TG)n Simple_repeat Simple_repeat 2 56 0 1939 124 3 18 chr6 146048766 146049048 -36366194 - AluSx SINE Alu -34 278 1 317 121 0 1 chr6 146049069 146049127 -36366115 - FLAM SINE Alu -8 125 82 915 347 105 11 chr6 146049538 146050146 -36365096 - L3 LINE CR1 -79 1498 834 333 115 0 19 chr6 146050359 146050411 -36364831 - MLT1A1-int LTR MaLR -1684 51 1 1820 210 16 22 chr6 146050411 146050778 -36364464 - MLT1A1 LTR MaLR 0 365 1 1852 163 3 23 chr6 146050871 146051177 -36364065 + AluSx SINE Alu 1 300 -12 305 364 16 0 chr6 146051328 146051449 -36363793 + MIR SINE MIR 47 169 -93 24 0 0 0 chr6 146051833 146051857 -36363385 + AT_rich Low_complexity Low_complexity 1 24 0 2231 129 34 45 chr6 146052296 146052675 -36362567 - THE1C LTR MaLR 0 375 1 10289 129 22 42 chr6 146052675 146054284 -36360958 - THE1C-int LTR MaLR 0 1580 4 1845 130 98 0 chr6 146054287 146054602 -36360640 - THE1C LTR MaLR 0 375 30 236 310 17 0 chr6 146055097 146055155 -36360087 - L2 LINE L2 -27 3245 3187 263 303 65 107 chr6 146055304 146055405 -36359837 - L2 LINE L2 -213 3059 2955 1761 145 3 77 chr6 146055405 146055729 -36359513 - AluJb SINE Alu -8 304 5 263 303 65 107 chr6 146055729 146055888 -36359354 - L2 LINE L2 -317 2955 2810 1868 134 52 0 chr6 146056150 146056441 -36358801 - AluSq SINE Alu -7 306 1 589 176 129 94 chr6 146056449 146056501 -36358741 + MER5B DNA MER1_type 3 52 -126 2193 129 0 0 chr6 146056501 146056803 -36358439 - AluSg SINE Alu -8 302 1 589 176 129 94 chr6 146056803 146056920 -36358322 + MER5B DNA MER1_type 52 178 0 2369 253 76 77 chr6 146057498 146057886 -36357356 + L1MC5 LINE L1 5946 6333 -1628 2094 129 3 7 chr6 146057886 146058188 -36357054 + AluSx SINE Alu 1 301 -11 2369 253 76 77 chr6 146058188 146058309 -36356933 + L1MC5 LINE L1 6333 6453 -1508 2116 84 7 14 chr6 146058309 146058596 -36356646 + AluY SINE Alu 15 299 -12 2369 253 76 77 chr6 146058596 146059029 -36356213 + L1MC5 LINE L1 6453 6885 -1076 300 53 0 0 chr6 146059029 146059067 -36356175 + (CA)n Simple_repeat Simple_repeat 1 38 0 2369 253 76 77 chr6 146059067 146060089 -36355153 + L1MC5 LINE L1 6885 7917 -44 1900 156 3 13 chr6 146060116 146060423 -36354819 + AluJb SINE Alu 1 304 -8 339 242 94 47 chr6 146060969 146061097 -36354145 - L2 LINE L2 -1 3271 3138 253 29 118 0 chr6 146061680 146061714 -36353528 + L1ME LINE L1 5843 5880 -290 483 304 51 0 chr6 146061739 146061897 -36353345 - L2 LINE L2 -557 2757 2592 669 297 153 37 chr6 146061980 146062360 -36352882 + L2 LINE L2 2890 3313 0 223 221 230 18 chr6 146062481 146062594 -36352648 + L2 LINE L2 2328 2464 -850 1747 156 0 26 chr6 146062793 146063100 -36352142 - AluJo SINE Alu -11 301 3 23 0 0 0 chr6 146063111 146063134 -36352108 + AT_rich Low_complexity Low_complexity 1 23 0 2162 134 13 0 chr6 146063204 146063511 -36351731 - AluSx SINE Alu -1 311 1 765 252 165 5 chr6 146064337 146064555 -36350687 + MIR SINE MIR 10 262 0 921 229 9 40 chr6 146064583 146064806 -36350436 + MER58A DNA MER1_type 1 216 -8 870 188 45 86 chr6 146065068 146065259 -36349983 + MER96B DNA MER1_type? 1 181 -236 1981 136 35 23 chr6 146065259 146065299 -36349943 - L1MA9 LINE L1 0 6312 6274 1765 163 0 19 chr6 146065299 146065606 -36349636 + AluJb SINE Alu 1 301 -11 1981 136 35 23 chr6 146065606 146065961 -36349281 - L1MA9 LINE L1 -38 6274 5912 870 188 45 86 chr6 146065961 146066014 -36349228 + MER96B DNA MER1_type? 181 235 -182 238 162 54 40 chr6 146067168 146067242 -36348000 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 26958 46 2 6 chr6 146067558 146071748 -36343494 - L1PA5 LINE L1 0 6154 1979 393 318 145 4 chr6 146071808 146072063 -36343179 - L2 LINE L2 -849 2465 2175 189 0 0 0 chr6 146072134 146072155 -36343087 + (T)n Simple_repeat Simple_repeat 1 21 0 205 191 0 0 chr6 146072171 146072213 -36343029 + T-rich Low_complexity Low_complexity 1 42 0 7977 14 0 0 chr6 146072216 146073430 -36341812 - L1HS LINE L1 0 6155 4942 7812 18 0 0 chr6 146073436 146074338 -36340904 + L1HS LINE L1 4050 4951 -1195 953 193 11 11 chr6 146074340 146074516 -36340726 + MER58A DNA MER1_type 49 224 0 183 244 73 12 chr6 146074530 146074612 -36340630 - L2 LINE L2 -1505 1809 1723 24 53 0 0 chr6 146074774 146074812 -36340430 + AT_rich Low_complexity Low_complexity 1 38 0 2189 101 34 0 chr6 146075407 146075703 -36339539 - AluSx SINE Alu -6 306 1 2065 102 17 14 chr6 146076021 146076315 -36338927 + AluSx SINE Alu 1 295 -17 2236 104 13 0 chr6 146076548 146076856 -36338386 - AluSx SINE Alu 0 312 1 612 279 141 87 chr6 146077479 146077963 -36337279 - MLT1K LTR MaLR -2 586 77 259 292 88 53 chr6 146078660 146078795 -36336447 - L2 LINE L2 -62 3210 3070 731 273 34 25 chr6 146078795 146079033 -36336209 + MIR SINE MIR 3 242 -20 1934 116 25 3 chr6 146079048 146079333 -36335909 - AluJb SINE Alu -21 291 1 260 351 52 29 chr6 146079677 146079851 -36335391 - MER5B DNA MER1_type 0 178 1 2144 98 40 7 chr6 146080957 146081254 -36333988 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr6 146081626 146081647 -36333595 + (T)n Simple_repeat Simple_repeat 1 21 0 1934 18 9 0 chr6 146081667 146081895 -36333347 + L1PA4 LINE L1 5926 6155 0 964 199 165 31 chr6 146081946 146082237 -36333005 - L1ME3A LINE L1 0 6170 5841 1866 180 7 0 chr6 146082299 146082599 -36332643 - AluJb SINE Alu -10 302 1 191 130 0 22 chr6 146083077 146083123 -36332119 + (TA)n Simple_repeat Simple_repeat 1 45 0 338 79 53 0 chr6 146083211 146083287 -36331955 + (TA)n Simple_repeat Simple_repeat 1 80 0 1822 150 0 46 chr6 146083288 146083594 -36331648 - AluSx SINE Alu -20 292 1 2048 150 0 0 chr6 146083605 146083892 -36331350 - AluJb SINE Alu -25 287 1 1624 161 0 4 chr6 146084842 146085102 -36330140 + AluJb SINE Alu 1 259 -53 440 261 57 134 chr6 146085191 146085474 -36329768 + MIR SINE MIR 2 262 0 323 284 144 33 chr6 146085543 146085758 -36329484 - MIR SINE MIR -11 251 13 1961 129 0 71 chr6 146086385 146086509 -36328733 + AluSx SINE Alu 1 132 -180 2071 131 10 10 chr6 146086509 146086815 -36328427 - AluSq SINE Alu -7 306 1 1961 129 0 71 chr6 146086815 146087001 -36328241 + AluSx SINE Alu 132 289 -23 2209 93 0 0 chr6 146087019 146087336 -36327906 + AluSc SINE Alu 1 317 0 564 168 32 0 chr6 146088501 146088596 -36326646 + Tigger3(Golem) DNA MER2_type 1 98 -2931 * 3087 95 98 203 chr6 146088589 146088835 -36326407 + Tigger3(Golem) DNA MER2_type 2229 2499 -530 1162 91 23 23 chr6 146088835 146089033 -36326209 + AluSc SINE Alu 119 309 0 3087 95 98 203 chr6 146089033 146089505 -36325737 + Tigger3(Golem) DNA MER2_type 2499 3029 0 23 68 0 0 chr6 146089620 146089664 -36325578 + AT_rich Low_complexity Low_complexity 1 44 0 606 88 0 0 chr6 146089892 146089972 -36325270 + MADE1 DNA Mariner 1 80 0 883 116 16 0 chr6 146090312 146090441 -36324801 - FLAM_C SINE Alu -2 131 1 1471 180 28 25 chr6 146090450 146090733 -36324509 - AluJo SINE Alu -7 305 22 22 0 0 0 chr6 146091250 146091272 -36323970 + AT_rich Low_complexity Low_complexity 1 22 0 1912 125 52 7 chr6 146091926 146092214 -36323028 - AluSx SINE Alu -11 301 1 21 36 0 0 chr6 146092292 146092320 -36322922 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 146092694 146092716 -36322526 + AT_rich Low_complexity Low_complexity 1 22 0 1897 154 0 7 chr6 146092771 146093077 -36322165 - AluSx SINE Alu -8 304 1 1463 222 145 14 chr6 146093953 146094394 -36320848 - L1MC4a LINE L1 -1221 6587 6089 1346 199 133 15 chr6 146094398 146094730 -36320512 - L1MC4a LINE L1 -1928 5880 5510 1659 301 91 40 chr6 146094748 146095610 -36319632 - L1M4 LINE L1 -1896 4250 3433 2112 136 10 0 chr6 146095610 146095905 -36319337 + AluSx SINE Alu 5 302 -10 1659 301 91 40 chr6 146095905 146096074 -36319168 - L1M4 LINE L1 -2713 3433 3274 2351 93 3 0 chr6 146096074 146096375 -36318867 + AluSq SINE Alu 1 302 -11 1659 301 91 40 chr6 146096375 146097180 -36318062 - L1M4 LINE L1 -2872 3274 2319 2524 58 0 0 chr6 146097259 146097553 -36317689 - AluY SINE Alu -17 294 1 10717 82 29 1 chr6 146097560 146099840 -36315402 - L1PA7 LINE L1 -5 6149 3827 568 306 79 28 chr6 146100386 146100739 -36314503 - HAL1b LINE L1 -598 750 380 326 287 85 85 chr6 146100812 146101094 -36314148 - HAL1 LINE L1 -1134 1373 1092 341 317 171 14 chr6 146102273 146102560 -36312682 - L2 LINE L2 -1053 2261 1930 2173 127 7 0 chr6 146103386 146103694 -36311548 - AluSx SINE Alu -2 310 1 189 0 0 0 chr6 146103765 146103786 -36311456 + (TAA)n Simple_repeat Simple_repeat 2 22 0 39 22 0 0 chr6 146104421 146104467 -36310775 + AT_rich Low_complexity Low_complexity 1 46 0 398 337 207 17 chr6 146104547 146105063 -36310179 + L2 LINE L2 1852 2465 -849 24 32 0 0 chr6 146105140 146105171 -36310071 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr6 146105740 146105776 -36309466 + AT_rich Low_complexity Low_complexity 1 36 0 206 279 0 0 chr6 146106797 146106840 -36308402 - L2 LINE L2 -17 3255 3213 772 213 194 9 chr6 146107027 146107243 -36307999 + MIR SINE MIR 7 262 0 338 240 107 25 chr6 146107572 146107693 -36307549 + MIR SINE MIR 118 248 -14 1751 179 20 0 chr6 146107987 146108284 -36306958 + AluJb SINE Alu 1 303 -9 29 60 0 0 chr6 146108454 146108504 -36306738 + AT_rich Low_complexity Low_complexity 1 50 0 288 274 230 0 chr6 146108524 146108659 -36306583 + MIR SINE MIR 97 262 0 551 216 32 49 chr6 146108766 146108951 -36306291 + L1MC4 LINE L1 7861 8042 0 792 227 57 32 chr6 146110899 146111146 -36304096 + HAL1 LINE L1 2253 2505 -2 1674 123 31 15 chr6 146112868 146113129 -36302113 - AluJb SINE Alu -15 297 33 291 311 90 16 chr6 146113643 146113765 -36301477 + MIR SINE MIR 16 146 -62 222 118 0 0 chr6 146113781 146113815 -36301427 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 235 291 106 40 chr6 146113839 146113990 -36301252 - L2 LINE L2 -34 3279 3119 313 340 120 5 chr6 146114028 146114228 -36301014 + L2 LINE L2 2498 2720 -594 528 173 10 19 chr6 146114233 146114355 -36300887 + L1MC3 LINE L1 6214 7777 -1 525 260 202 41 chr6 146114386 146114849 -36300393 + L2 LINE L2 2730 3270 -2 589 211 0 0 chr6 146115260 146115364 -36299878 + FRAM SINE Alu 1 100 -76 1087 83 0 0 chr6 146115392 146115525 -36299717 + AluSg SINE Alu 1 133 -177 2404 78 0 0 chr6 146115525 146115818 -36299424 + AluSg SINE Alu 1 293 -17 22 0 0 0 chr6 146119151 146119173 -36296069 + AT_rich Low_complexity Low_complexity 1 22 0 183 234 36 124 chr6 146119767 146119904 -36295338 + MIR SINE MIR 27 151 -57 2187 119 0 13 chr6 146120284 146120463 -36294779 - AluSx SINE Alu 0 312 137 2189 112 7 7 chr6 146120463 146120759 -36294483 - AluSx SINE Alu -16 296 1 2187 119 0 13 chr6 146120759 146120881 -36294361 - AluSx SINE Alu -175 137 15 31 68 0 0 chr6 146121509 146121568 -36293674 + AT_rich Low_complexity Low_complexity 1 59 0 1128 259 93 26 chr6 146122489 146122963 -36292279 - MLT1H LTR MaLR -2 547 1 2352 98 3 0 chr6 146122995 146123300 -36291942 - AluSp SINE Alu -7 306 1 486 225 90 56 chr6 146124308 146124486 -36290756 - L1ME3 LINE L1 -3 6159 5976 974 126 0 15 chr6 146124556 146124691 -36290551 - FLAM_C SINE Alu 0 133 1 1405 161 44 79 chr6 146124868 146125185 -36290057 - AluJb SINE Alu -4 308 3 2509 114 27 41 chr6 146125654 146126023 -36289219 + THE1B LTR MaLR 1 364 0 292 351 91 41 chr6 146127026 146127368 -36287874 + L2 LINE L2 2381 2739 -575 389 328 74 34 chr6 146127381 146127694 -36287548 + L1M4 LINE L1 4075 4413 -1733 270 116 0 0 chr6 146127694 146127737 -36287505 + (TG)n Simple_repeat Simple_repeat 2 44 0 389 328 74 34 chr6 146127737 146127868 -36287374 + L1M4 LINE L1 4413 4537 -1609 203 122 24 24 chr6 146128340 146128381 -36286861 + CT-rich Low_complexity Low_complexity 2 42 0 434 271 157 46 chr6 146130123 146130403 -36284839 + L2 LINE L2 3003 3313 0 244 167 194 28 chr6 146132050 146132158 -36283084 - L1MC5 LINE L1 -30 7931 7806 2703 216 63 40 chr6 146132209 146132625 -36282617 - L1ME2 LINE L1 -10 6154 5749 2038 141 0 3 chr6 146132625 146132922 -36282320 - AluSx SINE Alu -16 296 1 2703 216 63 40 chr6 146132922 146133965 -36281277 - L1ME2 LINE L1 -415 5749 4614 271 261 15 0 chr6 146133967 146134032 -36281210 - L1ME2 LINE L1 -1805 4341 4276 182 300 0 0 chr6 146135264 146135314 -36279928 - L2 LINE L2 0 3313 3264 590 218 0 9 chr6 146136145 146136255 -36278987 - FLAM_A SINE Alu -30 112 4 862 171 82 0 chr6 146136527 146136673 -36278569 + AluJb SINE Alu 131 288 -24 241 316 13 13 chr6 146137176 146137255 -36277987 - MIR SINE MIR -25 237 159 435 347 55 26 chr6 146137870 146138178 -36277064 + L2 LINE L2 2429 2745 -569 2010 124 47 3 chr6 146138407 146138706 -36276536 + AluSq SINE Alu 1 312 -1 489 251 182 62 chr6 146138839 146138882 -36276360 + L1MC/D LINE L1 5255 5291 -2517 2223 110 0 3 chr6 146138882 146139182 -36276060 + AluSq SINE Alu 1 299 -14 489 251 182 62 chr6 146139182 146139441 -36275801 + L1MC/D LINE L1 5291 5518 -2290 2076 129 3 0 chr6 146139441 146139756 -36275486 - AluSx SINE Alu 0 316 1 489 251 182 62 chr6 146139756 146139900 -36275342 + L1MC/D LINE L1 5518 5758 -2050 664 216 45 0 chr6 146139953 146140087 -36275155 - MLT1F LTR MaLR -12 555 416 849 290 29 22 chr6 146140104 146140380 -36274862 - MLT1F LTR MaLR -264 278 1 277 276 292 26 chr6 146140664 146140856 -36274386 + L2 LINE L2 3030 3272 0 349 310 126 75 chr6 146143218 146144133 -36271109 + L1M2 LINE L1 442 1402 -5447 227 316 10 0 chr6 146144137 146144235 -36271007 - MIR3 SINE MIR -29 179 81 1704 176 7 3 chr6 146147057 146147346 -36267896 + AluJb SINE Alu 6 295 -17 1009 79 0 0 chr6 146147348 146147474 -36267768 + AluSc SINE Alu 138 263 -46 814 184 357 17 chr6 146148198 146148492 -36266750 - MLT2D LTR ERVL -14 400 7 1722 172 14 30 chr6 146148926 146149223 -36266019 - AluJo SINE Alu -18 294 3 1870 164 0 13 chr6 146149273 146149572 -36265670 + AluJb SINE Alu 1 295 -17 2411 53 0 0 chr6 146149574 146149891 -36265351 + AluY SINE Alu 1 317 0 3727 202 59 50 chr6 146150110 146150976 -36264266 - L1MCb LINE L1 -4853 1192 430 2594 70 0 0 chr6 146150976 146151288 -36263954 - AluSx SINE Alu 0 312 1 3727 202 59 50 chr6 146151288 146151721 -36263521 - L1MCb LINE L1 -5615 430 3 411 281 87 79 chr6 146152476 146152946 -36262296 + MLT1K LTR MaLR 2 475 -1 766 276 15 34 chr6 146153317 146153581 -36261661 - MIR SINE MIR -2 260 2 185 0 40 0 chr6 146153750 146153775 -36261467 + (TG)n Simple_repeat Simple_repeat 2 27 0 1215 171 11 71 chr6 146154075 146154099 -36261143 - L1MB7 LINE L1 0 6184 6160 920 108 7 50 chr6 146154099 146154238 -36261004 + FLAM_C SINE Alu 1 133 0 1215 171 11 71 chr6 146154238 146154482 -36260760 - L1MB7 LINE L1 -24 6160 5932 851 140 7 0 chr6 146155168 146155304 -36259938 + L1MB4 LINE L1 6044 6180 0 526 107 0 12 chr6 146155317 146155401 -36259841 + L1MB8 LINE L1 6096 6178 0 245 242 67 67 chr6 146155494 146155614 -36259628 + MLT1J LTR MaLR 327 446 -65 810 90 0 0 chr6 146155980 146156080 -36259162 + HY3 scRNA scRNA 1 100 -1 261 0 0 0 chr6 146156711 146156740 -36258502 + (TG)n Simple_repeat Simple_repeat 2 30 0 299 351 0 18 chr6 146157421 146157532 -36257710 + L2 LINE L2 3198 3306 -7 2200 109 3 3 chr6 146157731 146158034 -36257208 + AluSq SINE Alu 1 303 -10 1985 137 0 0 chr6 146158932 146159203 -36256039 - AluSx SINE Alu -41 271 1 2216 119 16 0 chr6 146159457 146159760 -36255482 - AluSx SINE Alu -4 308 1 1768 183 3 6 chr6 146160054 146160365 -36254877 - AluJo SINE Alu -2 310 1 2334 85 3 3 chr6 146162105 146162412 -36252830 + AluY SINE Alu 2 308 -3 2134 133 139 18 chr6 146162469 146162851 -36252391 + MSTA LTR MaLR 1 428 0 2135 206 204 15 chr6 146162974 146163635 -36251607 - LTR48 LTR ERV1 -1 786 1 484 250 0 0 chr6 146164496 146164608 -36250634 + L1ME3A LINE L1 6058 6169 -1 1551 160 52 59 chr6 146164663 146164970 -36250272 + AluJb SINE Alu 4 308 -4 217 325 24 24 chr6 146165249 146165332 -36249910 - MIR3 SINE MIR -23 185 103 288 339 58 16 chr6 146165374 146165588 -36249654 + MIR SINE MIR 33 256 -6 198 0 0 0 chr6 146165606 146165628 -36249614 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 217 239 65 43 chr6 146166531 146166623 -36248619 + L2 LINE L2 2713 2806 -508 268 309 58 92 chr6 146166702 146166909 -36248333 + L2 LINE L2 2955 3154 -118 1078 146 83 0 chr6 146168209 146168401 -36246841 - L1PA11 LINE L1 -2 6172 5965 6681 149 28 30 chr6 146169012 146169497 -36245745 + L1MC1 LINE L1 4614 5099 -1234 1628 148 60 21 chr6 146169497 146169781 -36245461 - AluJb SINE Alu -13 299 5 6681 149 28 30 chr6 146169781 146169918 -36245324 + L1MC1 LINE L1 5099 5235 -1098 1969 141 28 0 chr6 146169918 146170209 -36245033 + AluSx SINE Alu 1 299 -13 6681 149 28 30 chr6 146170209 146171055 -36244187 + L1MC1 LINE L1 5235 6075 -258 1552 163 10 44 chr6 146171055 146171397 -36243845 + AluJo SINE Alu 1 332 0 6681 149 28 30 chr6 146171397 146171643 -36243599 + L1MC1 LINE L1 6075 6320 -13 929 216 5 44 chr6 146172064 146172268 -36242974 - MER58A DNA MER1_type -15 209 14 1787 167 31 3 chr6 146172431 146172724 -36242518 - AluJb SINE Alu -11 301 1 305 169 56 56 chr6 146172784 146172873 -36242369 + L2 LINE L2 3221 3309 -4 1992 192 85 19 chr6 146173548 146174039 -36241203 + MER39 LTR ERV1 1 707 0 234 0 0 0 chr6 146174066 146174092 -36241150 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 285 29 0 0 chr6 146174091 146174125 -36241117 + (GA)n Simple_repeat Simple_repeat 1 34 0 363 333 48 11 chr6 146174243 146174429 -36240813 - MIR SINE MIR 0 262 70 555 227 49 25 chr6 146174431 146174594 -36240648 + MER96 DNA MER1_type? 8 174 -1 1495 204 130 74 chr6 146174708 146175384 -36239858 - Charlie2 DNA MER1_type 0 2862 2149 992 198 163 25 chr6 146175539 146175717 -36239525 - Charlie2 DNA MER1_type -685 2177 2025 2100 114 7 3 chr6 146175717 146176016 -36239226 - AluY SINE Alu -11 300 1 992 198 163 25 chr6 146176016 146176120 -36239122 - Charlie2 DNA MER1_type -837 2025 1856 525 290 15 62 chr6 146176122 146176394 -36238848 - Charlie2 DNA MER1_type -2537 325 67 25 65 0 0 chr6 146177383 146177429 -36237813 + AT_rich Low_complexity Low_complexity 1 46 0 1539 115 96 106 chr6 146177533 146177845 -36237397 - AluSx SINE Alu -3 309 1 764 175 66 33 chr6 146178640 146178823 -36236419 + MER45C DNA AcHobo 1 189 -764 11490 82 9 6 chr6 146179438 146181718 -36233524 + L1PA7 LINE L1 3827 6149 -5 2402 86 0 0 chr6 146181725 146182027 -36233215 + AluY SINE Alu 1 302 -9 572 113 12 12 chr6 146182054 146182134 -36233108 + FLAM SINE Alu 47 126 -17 1008 150 39 6 chr6 146182991 146183171 -36232071 - Charlie1 DNA MER1_type -200 2561 2376 1267 133 79 0 chr6 146183314 146183517 -36231725 - L1PA16 LINE L1 -9 6157 5939 928 161 186 5 chr6 146183517 146183716 -36231526 - MER21A LTR ERV1 -696 235 1 6074 210 34 20 chr6 146183716 146184218 -36231024 - L1 LINE L1 -952 5194 4700 216 0 0 0 chr6 146184218 146184242 -36231000 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6074 210 34 20 chr6 146184242 146184517 -36230725 - L1 LINE L1 -1446 4700 4430 231 36 0 0 chr6 146184517 146184545 -36230697 + (TG)n Simple_repeat Simple_repeat 1 28 0 6074 210 34 20 chr6 146184545 146184724 -36230518 - L1 LINE L1 -1716 4430 4255 1475 129 155 23 chr6 146184724 146184988 -36230254 + AluJb SINE Alu 6 304 -8 6074 210 34 20 chr6 146184988 146185490 -36229752 - L1 LINE L1 -1891 4255 3714 768 292 112 32 chr6 146185822 146186285 -36228957 + LTR33 LTR ERVL 14 513 -8 798 213 49 83 chr6 146186471 146186607 -36228635 + L1MC5 LINE L1 7076 7215 -746 1975 134 17 0 chr6 146186607 146186897 -36228345 - AluJb SINE Alu -17 295 1 798 213 49 83 chr6 146186897 146187497 -36227745 + L1MC5 LINE L1 7215 7925 -36 2207 100 6 26 chr6 146187608 146187919 -36227323 - AluSx SINE Alu -7 305 1 241 222 0 0 chr6 146188181 146188226 -36227016 + Zaphod DNA AcHobo 23 67 -3964 255 354 0 0 chr6 146188272 146188354 -36226888 + MER115 DNA AcHobo 150 231 -462 600 238 80 0 chr6 146188452 146188603 -36226639 + MER115 DNA AcHobo 459 621 -72 1349 208 20 27 chr6 146188603 146188896 -36226346 + AluJo SINE Alu 5 295 -17 512 203 43 7 chr6 146188904 146189042 -36226200 + L1M4 LINE L1 4118 4260 -1886 1130 222 124 71 chr6 146189078 146189596 -36225646 + L1M4 LINE L1 4564 5108 -1038 181 135 39 0 chr6 146189606 146189658 -36225584 + (TA)n Simple_repeat Simple_repeat 1 54 0 1671 149 0 4 chr6 146189734 146189983 -36225259 + AluSx SINE Alu 1 248 -64 385 179 11 11 chr6 146190005 146190100 -36225142 + GA-rich Low_complexity Low_complexity 3 97 0 2784 225 95 39 chr6 146190104 146190641 -36224601 + L1ME1 LINE L1 4524 5029 -1137 1489 134 134 26 chr6 146190641 146190910 -36224332 + AluSg1 SINE Alu 1 298 -11 2784 225 95 39 chr6 146190910 146191656 -36223586 + L1ME1 LINE L1 5029 5914 -252 1496 169 10 30 chr6 146191656 146191958 -36223284 - AluJo SINE Alu -5 307 12 2784 225 95 39 chr6 146191958 146192117 -36223125 + L1ME1 LINE L1 5914 6063 -103 357 44 0 0 chr6 146192117 146192162 -36223080 + L1MA5 LINE L1 6254 6298 -2 1566 184 35 0 chr6 146192167 146192455 -36222787 + AluJb SINE Alu 1 298 -14 1402 198 60 0 chr6 146192455 146192723 -36222519 - AluJb SINE Alu -28 284 1 727 206 0 11 chr6 146192731 146192915 -36222327 + L1MC5 LINE L1 7660 7841 -120 500 252 121 14 chr6 146193257 146193496 -36221746 + MER45C DNA AcHobo 678 945 -8 384 175 175 10 chr6 146193630 146193733 -36221509 - LTR28 LTR ERV1 -166 854 735 273 317 50 0 chr6 146193836 146193937 -36221305 + MIR SINE MIR 13 118 -144 27 29 0 0 chr6 146194006 146194040 -36221202 + AT_rich Low_complexity Low_complexity 1 34 0 2002 178 61 180 chr6 146194197 146195135 -36220107 + LTR28 LTR ERV1 1 1019 -1 1631 216 89 35 chr6 146195182 146195389 -36219853 + LTR2 LTR ERV1 1 195 -254 186 43 0 0 chr6 146195389 146195412 -36219830 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 1631 216 89 35 chr6 146195412 146195629 -36219613 + LTR2 LTR ERV1 195 448 -1 1850 134 7 21 chr6 146195629 146195912 -36219330 - AluJb SINE Alu -33 279 1 580 275 177 37 chr6 146196067 146196474 -36218768 + L1ME LINE L1 5328 5791 -330 190 175 18 18 chr6 146196498 146196555 -36218687 + (TA)n Simple_repeat Simple_repeat 1 57 0 33 25 0 0 chr6 146196585 146196625 -36218617 + AT_rich Low_complexity Low_complexity 1 40 0 1993 123 39 0 chr6 146196625 146196910 -36218332 + AluSx SINE Alu 1 296 -16 372 205 0 137 chr6 146197054 146197171 -36218071 + MIR SINE MIR 8 108 -154 194 333 63 0 chr6 146197211 146197274 -36217968 - MIR SINE MIR -191 71 5 225 0 0 0 chr6 146197296 146197321 -36217921 + (GA)n Simple_repeat Simple_repeat 2 26 0 187 340 19 0 chr6 146197400 146197453 -36217789 + L2 LINE L2 3201 3254 -18 180 0 0 0 chr6 146197545 146197565 -36217677 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 2264 125 0 0 chr6 146197565 146197877 -36217365 + AluSx SINE Alu 1 312 0 390 21 0 0 chr6 146198920 146198967 -36216275 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 265 298 61 88 chr6 146199249 146199430 -36215812 - MIR3 SINE MIR -12 196 21 251 265 76 76 chr6 146199763 146200012 -36215230 + MLT1L LTR MaLR 34 282 -333 557 244 86 8 chr6 146200251 146200466 -36214776 - MER106B DNA MER1_type -1 1058 5 212 86 29 0 chr6 146200905 146200940 -36214302 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 2163 125 6 0 chr6 146200942 146201253 -36213989 - AluSp SINE Alu 0 313 1 487 271 81 45 chr6 146201264 146201485 -36213757 - MIR SINE MIR -14 248 20 2159 135 3 3 chr6 146201999 146202311 -36212931 - AluSx SINE Alu 0 312 1 195 100 0 0 chr6 146203194 146203224 -36212018 + (GA)n Simple_repeat Simple_repeat 1 30 0 1721 138 3 71 chr6 146203788 146204114 -36211128 - AluJb SINE Alu -8 304 1 344 241 105 19 chr6 146204324 146204486 -36210756 + L3 LINE CR1 1112 1287 -290 394 267 68 43 chr6 146204509 146204670 -36210572 - MIR3 SINE MIR -6 202 38 1063 170 0 6 chr6 146205584 146205766 -36209476 - FRAM SINE Alu 0 176 1 535 276 65 51 chr6 146205909 146206126 -36209116 - MIR SINE MIR -29 233 14 208 200 0 0 chr6 146206199 146206239 -36209003 + L2 LINE L2 3233 3272 0 285 206 48 0 chr6 146206550 146206613 -36208629 - MIR3 SINE MIR -38 170 105 2034 129 34 0 chr6 146206637 146206931 -36208311 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr6 146207656 146207680 -36207562 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr6 146207704 146207746 -36207496 + AT_rich Low_complexity Low_complexity 1 42 0 1320 214 48 17 chr6 146208051 146208341 -36206901 - AluJo SINE Alu -6 306 8 1102 217 65 31 chr6 146208557 146208847 -36206395 - MLT1C LTR MaLR 0 467 168 2145 114 0 23 chr6 146208873 146209179 -36206063 - AluSx SINE Alu -13 299 1 290 282 0 0 chr6 146209530 146209601 -36205641 + L2 LINE L2 3004 3074 -239 366 284 112 0 chr6 146209601 146209717 -36205525 + L2 LINE L2 3185 3313 0 1937 131 0 11 chr6 146209792 146210060 -36205182 - AluSx SINE Alu -42 270 6 305 325 17 8 chr6 146210281 146210398 -36204844 + L1ME4a LINE L1 5760 5877 -244 195 100 0 0 chr6 146211129 146211159 -36204083 + (TC)n Simple_repeat Simple_repeat 1 30 0 1498 124 16 114 chr6 146211394 146211701 -36203541 - AluSx SINE Alu -14 298 22 394 374 47 0 chr6 146211779 146211993 -36203249 - MIR SINE MIR -2 260 37 27 0 0 0 chr6 146212857 146212884 -36202358 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr6 146213174 146213198 -36202044 + AT_rich Low_complexity Low_complexity 1 24 0 241 216 68 68 chr6 146213316 146213464 -36201778 - L1ME4a LINE L1 0 6121 5974 343 315 81 50 chr6 146213623 146213677 -36201565 - L1ME LINE L1 -509 5612 5561 2161 101 3 14 chr6 146213677 146213974 -36201268 - AluSx SINE Alu -18 294 1 343 315 81 50 chr6 146213974 146214141 -36201101 - L1ME LINE L1 -560 5561 5384 1631 139 0 33 chr6 146215757 146216031 -36199211 + AluJo SINE Alu 34 298 -14 405 0 0 0 chr6 146216343 146216388 -36198854 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1685 165 3 34 chr6 146216398 146216689 -36198553 - AluJo SINE Alu -30 282 1 507 218 60 40 chr6 146216916 146216972 -36198270 - LTR16C LTR ERVL 0 491 438 2970 173 39 26 chr6 146216972 146217515 -36197727 - MER44D DNA MER2_type 0 605 1 507 218 60 40 chr6 146217515 146217640 -36197602 - LTR16C LTR ERVL -53 438 273 1668 113 88 42 chr6 146217678 146217961 -36197281 + AluJo SINE Alu 1 296 -16 535 297 104 43 chr6 146218183 146218557 -36196685 - MLT1J LTR MaLR -4 507 111 279 0 0 0 chr6 146218602 146218633 -36196609 + (T)n Simple_repeat Simple_repeat 1 31 0 5301 180 68 84 chr6 146218811 146220172 -36195070 + MER45R DNA AcHobo 2 1341 -240 1426 194 73 22 chr6 146220176 146220490 -36194752 - MER2 DNA MER2_type -15 330 1 1026 164 12 92 chr6 146220569 146220661 -36194581 + MER45R DNA AcHobo 1343 1441 -140 1962 157 49 49 chr6 146220661 146221049 -36194193 + MLT1B LTR MaLR 1 388 -2 1026 164 12 92 chr6 146221049 146221081 -36194161 + MER45R DNA AcHobo 1441 1474 -107 2337 82 7 0 chr6 146221081 146221375 -36193867 - AluSp SINE Alu -17 296 1 1026 164 12 92 chr6 146221375 146221499 -36193743 + MER45R DNA AcHobo 1474 1572 -9 1747 119 52 15 chr6 146222160 146222473 -36192769 + AluSx SINE Alu 32 354 0 295 353 70 19 chr6 146223011 146223167 -36192075 - L2 LINE L2 -3 3269 3106 291 311 85 33 chr6 146223200 146223412 -36191830 - L2 LINE L2 -674 2640 2418 21 36 0 0 chr6 146224334 146224362 -36190880 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 146225865 146225886 -36189356 + AT_rich Low_complexity Low_complexity 1 21 0 243 221 0 0 chr6 146226412 146226498 -36188744 + (TA)n Simple_repeat Simple_repeat 1 86 0 314 309 79 12 chr6 146226563 146226728 -36188514 - L1ME LINE L1 -303 5818 5643 530 335 35 8 chr6 146227419 146227673 -36187569 + L2 LINE L2 2712 2972 -342 1080 197 35 41 chr6 146227684 146227974 -36187268 - L1ME LINE L1 -1038 5108 4821 281 286 0 14 chr6 146228012 146228082 -36187160 - L2 LINE L2 -3 3310 3242 2800 76 38 0 chr6 146228359 146228701 -36186541 - THE1A LTR MaLR 0 355 1 2240 101 0 3 chr6 146228832 146229129 -36186113 + AluSg SINE Alu 1 296 -14 777 312 178 5 chr6 146229168 146229594 -36185648 - L3 LINE CR1 -17 1560 1061 1680 147 7 56 chr6 146229636 146229942 -36185300 - AluJb SINE Alu -21 291 1 451 284 0 17 chr6 146231040 146231205 -36184037 - L1ME3A LINE L1 -208 5962 5806 830 262 69 4 chr6 146231308 146231541 -36183701 - MIR SINE MIR -13 249 2 2008 131 0 0 chr6 146232656 146232970 -36182272 - AluSx SINE Alu 0 314 1 379 242 139 47 chr6 146233090 146233198 -36182044 + L1ME4a LINE L1 5864 5961 -160 987 194 104 20 chr6 146233198 146233399 -36181843 - MER20 DNA MER1_type 0 219 2 379 242 139 47 chr6 146233399 146233505 -36181737 + L1ME4a LINE L1 5961 6098 -23 1192 186 112 53 chr6 146234162 146234485 -36180757 + MER2 DNA MER2_type 2 343 -1 532 243 57 0 chr6 146235032 146235172 -36180070 - MIR SINE MIR -1 261 114 296 253 25 13 chr6 146235576 146235655 -36179587 - MER116 DNA Mariner 0 80 1 2152 133 0 25 chr6 146239409 146239725 -36175517 - AluSx SINE Alu -4 308 1 203 313 30 0 chr6 146240106 146240173 -36175069 + MIR3 SINE MIR 93 161 -47 1936 167 20 84 chr6 146240806 146240892 -36174350 + MLT2D LTR ERVL 1 91 -323 183 42 0 0 chr6 146240892 146240916 -36174326 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1936 167 20 84 chr6 146240916 146241271 -36173971 + MLT2D LTR ERVL 91 414 0 2127 137 0 3 chr6 146241966 146242273 -36172969 - AluJb SINE Alu -6 306 1 1936 147 24 0 chr6 146243221 146243513 -36171729 - AluJo SINE Alu -12 300 2 189 0 0 0 chr6 146244115 146244136 -36171106 + (T)n Simple_repeat Simple_repeat 1 21 0 2457 94 0 0 chr6 146244844 146245153 -36170089 - AluSg SINE Alu -1 309 1 1237 232 45 30 chr6 146245448 146245784 -36169458 - MER58B DNA MER1_type 0 341 1 287 252 25 92 chr6 146246137 146246204 -36169038 - MIR3 SINE MIR -17 191 121 807 162 8 0 chr6 146246204 146246321 -36168921 + FLAM_C SINE Alu 1 118 -15 201 74 0 0 chr6 146246321 146246348 -36168894 + (CAAT)n Simple_repeat Simple_repeat 1 27 0 287 252 25 92 chr6 146246348 146246398 -36168844 - MIR3 SINE MIR -85 123 81 458 327 134 52 chr6 146247416 146248037 -36167205 - L2 LINE L2 -655 2659 1988 396 214 0 101 chr6 146248212 146248371 -36166871 + MER112 DNA MER1_type 5 147 -113 237 119 0 0 chr6 146248371 146248413 -36166829 + (CATTC)n Simple_repeat Simple_repeat 3 44 0 689 250 6 12 chr6 146248694 146248867 -36166375 - MIR SINE MIR -56 206 36 1360 259 146 23 chr6 146249492 146250136 -36165106 - HAL1b LINE L1 0 1348 626 249 219 82 0 chr6 146250353 146250426 -36164816 - HAL1b LINE L1 -991 357 279 261 0 0 0 chr6 146250898 146250927 -36164315 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1542 198 4 0 chr6 146250938 146251206 -36164036 - AluJb SINE Alu -43 269 1 702 242 124 48 chr6 146252412 146252869 -36162373 + MLT1H1 LTR MaLR 1 555 0 21 0 0 0 chr6 146253230 146253251 -36161991 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 146253690 146253724 -36161518 + AT_rich Low_complexity Low_complexity 1 34 0 357 24 0 0 chr6 146253757 146253799 -36161443 + (TG)n Simple_repeat Simple_repeat 2 43 0 2206 122 0 7 chr6 146254374 146254678 -36160564 - AluSx SINE Alu -10 302 1 1906 217 81 60 chr6 146255162 146255693 -36159549 + MLT1F LTR MaLR 1 542 0 1790 118 40 51 chr6 146256632 146256928 -36158314 + AluSx SINE Alu 1 293 -19 23 0 0 0 chr6 146256970 146256993 -36158249 + AT_rich Low_complexity Low_complexity 1 23 0 941 224 18 23 chr6 146257058 146257287 -36157955 - MIR SINE MIR 0 262 35 321 273 149 0 chr6 146257801 146257835 -36157407 - L2 LINE L2 0 3272 3244 1834 159 100 85 chr6 146257835 146258293 -36156949 + MLT1C LTR MaLR 3 467 0 321 273 149 0 chr6 146258293 146258379 -36156863 - L2 LINE L2 -28 3244 3134 357 326 98 49 chr6 146258485 146258926 -36156316 - L2 LINE L2 -303 2969 2499 2031 140 0 0 chr6 146259063 146259370 -36155872 + AluSx SINE Alu 3 309 0 2065 142 23 31 chr6 146260403 146260756 -36154486 + MLT1A1 LTR MaLR 12 361 -4 2291 84 3 3 chr6 146262134 146262431 -36152811 - AluSq SINE Alu -16 297 1 731 258 61 4 chr6 146262712 146262952 -36152290 + MIR SINE MIR 7 252 -10 311 278 87 0 chr6 146262981 146263096 -36152146 - MIR SINE MIR -62 146 22 268 210 16 153 chr6 146263289 146263385 -36151857 - L2 LINE L2 -4 3309 3232 2357 99 7 0 chr6 146263385 146263688 -36151554 + AluSx SINE Alu 1 305 -7 268 210 16 153 chr6 146263688 146263715 -36151527 - L2 LINE L2 -81 3232 3203 225 271 0 0 chr6 146263800 146263848 -36151394 + MARNA DNA Mariner 196 243 -343 650 284 125 34 chr6 146263975 146264422 -36150820 + MARNA DNA Mariner 80 567 -19 1863 164 4 0 chr6 146264475 146264780 -36150462 + AluSx SINE Alu 1 306 0 2091 140 0 16 chr6 146265320 146265635 -36149607 - AluJo SINE Alu -2 310 1 1575 154 122 13 chr6 146266632 146266944 -36148298 + MER7A DNA MER2_type 3 346 0 2195 123 13 7 chr6 146267022 146267332 -36147910 + AluSx SINE Alu 1 312 0 346 307 107 13 chr6 146267629 146267779 -36147463 - MIR3 SINE MIR -34 174 11 1429 217 113 24 chr6 146268268 146268589 -36146653 - MLT1C LTR MaLR 0 467 97 2872 116 2 70 chr6 146268589 146269046 -36146196 + MSTA LTR MaLR 3 428 0 1429 217 113 24 chr6 146269046 146269148 -36146094 - MLT1C LTR MaLR -370 97 6 269 26 26 0 chr6 146269634 146269672 -36145570 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2667 70 16 47 chr6 146269672 146269908 -36145334 - L1PA10 LINE L1 -21 6147 5926 2387 72 0 16 chr6 146269908 146270213 -36145029 + AluY SINE Alu 1 300 -11 2667 70 16 47 chr6 146270213 146270363 -36144879 - L1PA10 LINE L1 -242 5926 5773 27 29 0 0 chr6 146270373 146270407 -36144835 + AT_rich Low_complexity Low_complexity 1 34 0 198 280 20 0 chr6 146270600 146270650 -36144592 + L2 LINE L2 3004 3054 -218 2306 167 31 70 chr6 146271566 146272050 -36143192 + MLT1C LTR MaLR 1 465 -2 582 281 99 48 chr6 146273014 146273366 -36141876 + L3 LINE CR1 1197 1566 -11 1732 141 72 10 chr6 146273455 146273746 -36141496 - AluJo SINE Alu -3 309 1 388 183 8 108 chr6 146274287 146274407 -36140835 - L1MC4a LINE L1 -1643 6165 6058 292 203 14 0 chr6 146274785 146274854 -36140388 + L1MC4a LINE L1 5945 6014 -1794 6451 223 39 48 chr6 146274970 146276740 -36138502 + L1MC4a LINE L1 6055 7808 0 1755 60 4 39 chr6 146277054 146277288 -36137954 - L1PA7 LINE L1 0 6154 5929 255 301 196 14 chr6 146277420 146277629 -36137613 - L2 LINE L2 -356 2958 2712 1295 141 82 86 chr6 146278352 146278656 -36136586 - AluJo SINE Alu -9 303 1 21 57 0 0 chr6 146278784 146278819 -36136423 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr6 146279033 146279058 -36136184 + AT_rich Low_complexity Low_complexity 1 25 0 207 167 0 0 chr6 146279912 146279954 -36135288 + (CAG)n Simple_repeat Simple_repeat 1 42 0 4671 112 38 38 chr6 146280492 146281023 -36134219 - Tigger3(Golem) DNA MER2_type 0 3028 2495 1968 132 3 7 chr6 146281023 146281327 -36133915 - AluSx SINE Alu -9 303 1 4671 112 38 38 chr6 146281327 146281596 -36133646 - Tigger3(Golem) DNA MER2_type -532 2496 2228 537 169 0 11 chr6 146281588 146281677 -36133565 - Tigger3(Golem) DNA MER2_type -2930 99 12 * 958 243 174 7 chr6 146282280 146282827 -36132415 + LTR50 LTR ERVL 56 792 -3 333 306 135 31 chr6 146283909 146284131 -36131111 - MIR SINE MIR 0 262 18 352 196 78 0 chr6 146284161 146284263 -36130979 - L1M4 LINE L1 -1108 5038 4929 310 273 144 0 chr6 146284521 146284653 -36130589 + LTR68 LTR ERV1 490 640 -100 1773 232 59 13 chr6 146284733 146285318 -36129924 - L1ME LINE L1 -366 5796 4742 * 3751 212 34 60 chr6 146285301 146285491 -36129751 - L1MC3 LINE L1 -6 7779 7586 1686 157 4 11 chr6 146285491 146285771 -36129471 - AluSx SINE Alu 0 312 35 3751 212 34 60 chr6 146285771 146286655 -36128587 - L1MC3 LINE L1 -199 7586 6732 309 26 0 0 chr6 146286690 146286728 -36128514 + (TG)n Simple_repeat Simple_repeat 1 38 0 228 67 0 0 chr6 146286730 146286760 -36128482 + (GA)n Simple_repeat Simple_repeat 2 31 0 1305 292 67 2 chr6 146287141 146287559 -36127683 + LTR16A LTR ERVL 1 445 -5 260 355 67 22 chr6 146287671 146287804 -36127438 + L2 LINE L2 2088 2213 -1101 1633 138 7 36 chr6 146287804 146288079 -36127163 - AluJo SINE Alu -45 267 1 260 355 67 22 chr6 146288079 146288298 -36126944 + L2 LINE L2 2213 2504 -810 345 309 7 88 chr6 146288462 146288515 -36126727 + L2 LINE L2 3147 3203 -69 2082 129 0 7 chr6 146288515 146288810 -36126432 - AluSq SINE Alu -20 293 1 345 309 7 88 chr6 146288810 146288892 -36126350 + L2 LINE L2 3203 3271 -1 270 264 16 25 chr6 146289458 146289579 -36125663 + L1ME3 LINE L1 4544 4663 -1483 7509 200 33 32 chr6 146289595 146292238 -36123004 + L1MB7 LINE L1 3523 6170 -14 1512 281 169 23 chr6 146292276 146293330 -36121912 + L1M4 LINE L1 3787 5060 -1086 2813 162 19 25 chr6 146293330 146293800 -36121442 + MLT1C LTR MaLR 1 467 0 1512 281 169 23 chr6 146293800 146294015 -36121227 + L1M4 LINE L1 5060 5242 -904 294 250 21 62 chr6 146294612 146294653 -36120589 + L1ME3 LINE L1 4665 4706 -1440 1590 140 4 0 chr6 146294653 146294889 -36120353 + AluSg/x SINE Alu 74 310 0 294 250 21 62 chr6 146294889 146294943 -36120299 + L1ME3 LINE L1 4706 4756 -1390 * 866 233 95 21 chr6 146294931 146295340 -36119902 + L1ME3 LINE L1 5119 5565 -597 658 243 7 0 chr6 146295363 146295499 -36119743 + MER45B DNA AcHobo 3 139 -901 2832 73 96 0 chr6 146295549 146295946 -36119296 - LTR7 LTR ERV1 -15 435 1 2296 109 59 13 chr6 146295946 146296321 -36118921 - HERVH LTR ERV1 0 7713 7322 1466 119 0 26 chr6 146296319 146296357 -36118885 - HERVH LTR ERV1 -1894 5819 5782 * 2880 16 9 0 chr6 146296357 146296672 -36118570 + AluYb8 SINE Alu 1 318 0 1466 119 0 26 chr6 146296672 146296859 -36118383 - HERVH LTR ERV1 -1931 5782 5600 32228 102 43 33 chr6 146296860 146301957 -36113285 - HERVH LTR ERV1 -2564 5149 1 2888 68 95 7 chr6 146301959 146302371 -36112871 - LTR7 LTR ERV1 -2 448 1 * 3878 198 66 22 chr6 146302371 146303214 -36112028 + MER45B DNA AcHobo 159 1038 -2 1695 239 61 21 chr6 146303218 146303729 -36111513 + L1ME3 LINE L1 5617 6147 -15 649 252 13 7 chr6 146303793 146303948 -36111294 + MER45B DNA AcHobo 457 612 -428 207 139 0 0 chr6 146304042 146304078 -36111164 + (TG)n Simple_repeat Simple_repeat 2 37 0 1799 160 0 33 chr6 146304292 146304592 -36110650 - AluJb SINE Alu -22 290 1 419 350 66 0 chr6 146304786 146304983 -36110259 + L2 LINE L2 2940 3149 -164 33235 102 11 61 chr6 146305091 146311560 -36103682 + L1PA7 LINE L1 13 6153 -1 270 191 0 0 chr6 146311579 146311626 -36103616 + L2 LINE L2 3265 3311 -2 1703 174 11 3 chr6 146312734 146313016 -36102226 + AluJb SINE Alu 1 284 -28 30 27 0 0 chr6 146313016 146313053 -36102189 + AT_rich Low_complexity Low_complexity 1 37 0 544 236 8 24 chr6 146313060 146313187 -36102055 - L2 LINE L2 0 3313 3189 609 317 75 35 chr6 146313336 146313775 -36101467 + L2 LINE L2 2614 3077 -195 2872 89 0 5 chr6 146314030 146314402 -36100840 - L1PB1 LINE L1 0 6151 5782 919 102 7 54 chr6 146314402 146314697 -36100545 + (TA)n Simple_repeat Simple_repeat 1 281 0 4021 103 14 1 chr6 146314697 146315439 -36099803 - L1PB1 LINE L1 -370 5781 5028 941 271 73 27 chr6 146315459 146315869 -36099373 - LTR16A LTR ERVL -7 443 15 2086 152 15 12 chr6 146315965 146316307 -36098935 - MER61A LTR ERV1 0 343 1 21 0 0 0 chr6 146316841 146316862 -36098380 + AT_rich Low_complexity Low_complexity 1 21 0 371 309 42 24 chr6 146317389 146317554 -36097688 - MIR SINE MIR -82 180 13 462 218 60 23 chr6 146318348 146318481 -36096761 - L2 LINE L2 -1 3271 3134 505 129 65 8 chr6 146319193 146319317 -36095925 - Charlie5 DNA MER1_type -123 2489 2359 438 242 73 0 chr6 146319468 146319592 -36095650 - FLAM_A SINE Alu -4 138 6 393 229 37 0 chr6 146319605 146319714 -36095528 + MER103 DNA DNA 54 166 0 206 274 0 0 chr6 146321557 146321608 -36093634 - L2 LINE L2 -2 3311 3261 610 223 169 0 chr6 146322065 146322249 -36092993 + MER58C DNA MER1_type 1 215 0 663 287 22 0 chr6 146322471 146322652 -36092590 - MER63A DNA MER1_type -24 186 2 301 196 0 131 chr6 146322818 146322925 -36092317 + MIR SINE MIR 131 223 -39 254 318 62 38 chr6 146323000 146323220 -36092022 + MIR SINE MIR 11 232 -30 1928 158 0 19 chr6 146323515 146323832 -36091410 + AluJb SINE Alu 1 311 -1 23 78 0 0 chr6 146323870 146323921 -36091321 + AT_rich Low_complexity Low_complexity 1 51 0 368 241 0 0 chr6 146324191 146324274 -36090968 - MER5A DNA MER1_type -97 92 10 2122 173 6 6 chr6 146325383 146325748 -36089494 + MLT1A1 LTR MaLR 1 365 0 2386 237 26 47 chr6 146326022 146326831 -36088411 + L1ME1 LINE L1 5351 6142 -24 2480 135 31 26 chr6 146326837 146327260 -36087982 + MSTB LTR MaLR 2 426 0 199 350 0 0 chr6 146327655 146327735 -36087507 + MIR SINE MIR 20 99 -163 2189 189 9 20 chr6 146327744 146327981 -36087261 - MLT1C LTR MaLR -9 458 227 2102 118 0 0 chr6 146327981 146328261 -36086981 - AluSx SINE Alu -32 280 1 2189 189 9 20 chr6 146328261 146328479 -36086763 - MLT1C LTR MaLR -240 227 8 265 323 0 0 chr6 146328502 146328567 -36086675 + MIR SINE MIR 119 183 -79 2520 159 21 2 chr6 146328921 146329341 -36085901 - MSTA LTR MaLR 0 428 1 308 268 190 14 chr6 146329401 146329543 -36085699 + MIR SINE MIR 86 252 -10 189 310 190 0 chr6 146330202 146330302 -36084940 + MIR SINE MIR 92 210 -52 226 273 132 58 chr6 146332930 146333051 -36082191 + MIR SINE MIR 63 192 -70 1750 145 35 24 chr6 146333237 146333526 -36081716 - AluJo SINE Alu -20 292 1 2512 74 0 3 chr6 146333536 146333846 -36081396 - AluSx SINE Alu -3 309 1 494 296 95 39 chr6 146333993 146334377 -36080865 - L1MC/D LINE L1 -777 5369 5051 2361 65 10 26 chr6 146334377 146334686 -36080556 - AluY SINE Alu -7 304 1 494 296 95 39 chr6 146334686 146334785 -36080457 - L1MC/D LINE L1 -1095 5051 4959 2099 148 0 0 chr6 146335803 146336101 -36079141 + AluSx SINE Alu 1 298 -14 247 307 57 11 chr6 146336606 146336694 -36078548 + MIR SINE MIR 30 121 -87 251 390 11 11 chr6 146336923 146337210 -36078032 - MER52-int LTR ERV1 -3347 3744 3458 227 337 0 11 chr6 146337751 146337843 -36077399 - MER5A DNA MER1_type -63 126 36 * 288 276 11 11 chr6 146337773 146337860 -36077382 + MER5A DNA MER1_type 96 182 -7 710 220 104 12 chr6 146337914 146338087 -36077155 + MER5A DNA MER1_type 1 189 0 249 258 21 11 chr6 146338711 146338804 -36076438 + MER113 DNA MER1_type? 1 94 -427 1202 143 37 55 chr6 146338827 146339100 -36076142 - L1MC3 LINE L1 -25 7760 7493 744 229 6 11 chr6 146339113 146339288 -36075954 + LTR40b LTR ERVL 287 460 -2 27 49 0 0 chr6 146339469 146339510 -36075732 + AT_rich Low_complexity Low_complexity 1 41 0 240 291 101 0 chr6 146339830 146339909 -36075333 + L2 LINE L2 3225 3311 -2 233 321 73 36 chr6 146339929 146340066 -36075176 - L2 LINE L2 -601 2713 2572 480 339 5 0 chr6 146340069 146340258 -36074984 + ERVL LTR ERVL 3294 3483 -2281 393 272 106 27 chr6 146340289 146340663 -36074579 + ERVL LTR ERVL 4061 4537 -1227 269 248 122 26 chr6 146341366 146341549 -36073693 - MLT1J LTR MaLR 0 511 250 260 351 9 0 chr6 146341612 146341723 -36073519 - MLT1J LTR MaLR -313 198 87 271 244 107 3 chr6 146341773 146341929 -36073313 - L1MC/D LINE L1 -334 5787 5673 313 297 130 5 chr6 146341931 146342123 -36073119 - L1MC/D LINE L1 -586 5580 5382 274 173 27 13 chr6 146342141 146342216 -36073026 + CT-rich Low_complexity Low_complexity 1 76 0 2057 119 7 3 chr6 146342216 146342510 -36072732 - AluSq SINE Alu -16 297 3 684 67 0 0 chr6 146342510 146342600 -36072642 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 221 0 0 33 chr6 146342602 146342632 -36072610 + (TC)n Simple_repeat Simple_repeat 2 30 0 932 214 78 10 chr6 146342774 146342980 -36072262 + MER58A DNA MER1_type 5 224 0 3690 103 0 4 chr6 146343594 146344107 -36071135 - MER9 LTR ERVK 0 511 1 2653 168 53 34 chr6 146345040 146345506 -36069736 + MLT2B2 LTR ERVL 1 479 -36 604 36 24 0 chr6 146345506 146345589 -36069653 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 2653 168 53 34 chr6 146345589 146345627 -36069615 + MLT2B2 LTR ERVL 479 515 0 2260 80 35 3 chr6 146345633 146345922 -36069320 - AluY SINE Alu -13 298 1 2760 155 23 5 chr6 146346116 146346763 -36068479 + L1M3 LINE L1 5107 5764 -419 888 235 212 6 chr6 146346855 146347166 -36068076 - MLT1F1 LTR MaLR -5 562 188 1242 244 8 0 chr6 146347210 146347472 -36067770 + Tigger7 DNA MER2_type 1 264 -2223 455 180 0 70 chr6 146347472 146347572 -36067670 + Tigger7 DNA MER2_type 2388 2480 -7 612 192 103 0 chr6 146347591 146347737 -36067505 - MLT1F1 LTR MaLR -381 161 1 390 198 64 57 chr6 146347985 146348142 -36067100 - Zaphod DNA AcHobo -1993 2038 1881 1922 213 106 97 chr6 146348196 146348445 -36066797 - Zaphod DNA AcHobo -2688 1343 1098 1831 53 0 20 chr6 146348445 146348691 -36066551 - L1PA10 LINE L1 0 6168 5928 1922 213 106 97 chr6 146348691 146349634 -36065608 - Zaphod DNA AcHobo -2933 1098 141 28 0 0 0 chr6 146349835 146349863 -36065379 + AT_rich Low_complexity Low_complexity 1 28 0 2131 115 0 7 chr6 146349871 146350167 -36065075 - AluSx SINE Alu -18 294 1 52 58 0 0 chr6 146351282 146351369 -36063873 + AT_rich Low_complexity Low_complexity 1 87 0 2409 80 3 0 chr6 146351824 146352124 -36063118 + AluSx SINE Alu 1 301 -11 757 138 54 8 chr6 146352124 146352254 -36062988 + AluSg/x SINE Alu 134 269 -43 214 140 40 40 chr6 146352365 146352465 -36062777 + (TG)n Simple_repeat Simple_repeat 1 100 0 328 116 69 29 chr6 146352476 146352649 -36062593 + (TG)n Simple_repeat Simple_repeat 1 180 0 777 290 66 7 chr6 146353332 146353604 -36061638 - L2 LINE L2 -745 2569 2282 476 299 35 26 chr6 146353616 146354045 -36061197 - ERVL LTR ERVL -977 4508 4021 447 346 10 0 chr6 146354076 146354284 -36060958 - ERVL LTR ERVL -2281 3483 3274 184 365 59 0 chr6 146354319 146354404 -36060838 + L2 LINE L2 2624 2713 -601 256 313 75 0 chr6 146354443 146354523 -36060719 - L2 LINE L2 -3 3310 3225 841 204 28 168 chr6 146354556 146355229 -36060013 + LTR4 LTR ERV1 16 594 -2 23 54 0 0 chr6 146355286 146355323 -36059919 + AT_rich Low_complexity Low_complexity 1 37 0 218 194 30 15 chr6 146355323 146355390 -36059852 + (TA)n Simple_repeat Simple_repeat 1 68 0 562 302 80 22 chr6 146355475 146356155 -36059087 - ERVL LTR ERVL -2497 3157 2393 323 206 0 22 chr6 146356444 146356536 -36058706 - LTR67 LTR ERVL 0 557 468 310 178 102 59 chr6 146356567 146356685 -36058557 + LTR37B LTR ERV1 346 468 0 210 71 0 0 chr6 146356863 146356891 -36058351 + (TTTTTG)n Simple_repeat Simple_repeat 5 32 0 225 0 0 0 chr6 146357165 146357190 -36058052 + (CA)n Simple_repeat Simple_repeat 2 26 0 850 193 6 6 chr6 146357826 146357987 -36057255 - FRAM SINE Alu -4 172 12 23 54 0 0 chr6 146358326 146358363 -36056879 + AT_rich Low_complexity Low_complexity 1 37 0 2413 98 0 0 chr6 146359018 146359324 -36055918 + AluSg SINE Alu 1 306 -4 609 238 50 67 chr6 146359738 146359978 -36055264 + MER31-int LTR ERV1 3818 4053 -883 252 177 65 0 chr6 146360214 146360276 -36054966 + LTR37B LTR ERV1 3 68 -400 1636 204 11 11 chr6 146360324 146360676 -36054566 - MLT1A1 LTR MaLR -4 361 10 481 222 141 11 chr6 146360779 146360964 -36054278 + LTR37B LTR ERV1 205 413 -55 1934 252 47 35 chr6 146360993 146361650 -36053592 + L1ME3 LINE L1 5431 6099 -63 2248 116 0 3 chr6 146361650 146361960 -36053282 - AluSg1 SINE Alu 0 309 1 1934 252 47 35 chr6 146361960 146362019 -36053223 + L1ME3 LINE L1 6099 6156 -6 547 289 78 67 chr6 146362019 146362392 -36052850 - LTR67 LTR ERVL -72 485 109 7027 154 13 7 chr6 146362808 146365151 -36050091 - L1PB1 LINE L1 -1 6150 3797 236 77 26 0 chr6 146365350 146365389 -36049853 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr6 146365466 146365505 -36049737 + (TG)n Simple_repeat Simple_repeat 1 39 0 224 200 0 0 chr6 146365505 146365545 -36049697 + GA-rich Low_complexity Low_complexity 2 41 0 315 194 0 0 chr6 146365853 146365915 -36049327 + L1 LINE L1 3814 3875 -2271 651 289 55 28 chr6 146366353 146366644 -36048598 - MLT1K LTR MaLR -2 586 288 13369 210 59 26 chr6 146367885 146375130 -36040112 + L1MA9 LINE L1 1 7189 -144 1967 173 20 86 chr6 146375130 146375570 -36039672 - MSTB LTR MaLR 0 426 16 327 216 78 43 chr6 146375576 146375692 -36039550 + L1MA9 LINE L1 7184 7303 -30 264 204 19 0 chr6 146375777 146375831 -36039411 + Tigger5 DNA MER2_type 1 55 -2268 * 398 200 14 0 chr6 146375801 146375871 -36039371 + Tigger5 DNA MER2_type 2251 2321 -2 2333 97 3 0 chr6 146375904 146376204 -36039038 - AluSc SINE Alu -8 301 1 2026 175 47 28 chr6 146377104 146377642 -36037600 - MLT2A2 LTR ERVL 0 554 1 1784 249 95 24 chr6 146378073 146378912 -36036330 - L2 LINE L2 0 3313 2416 34 42 0 0 chr6 146380326 146380374 -36034868 + AT_rich Low_complexity Low_complexity 1 48 0 2059 148 0 0 chr6 146381284 146381581 -36033661 - AluSx SINE Alu -15 297 1 1804 166 0 10 chr6 146381960 146382255 -36032987 + AluJb SINE Alu 1 292 -20 1667 147 13 43 chr6 146382318 146382618 -36032624 + AluJo SINE Alu 1 291 -21 369 0 0 0 chr6 146382623 146382664 -36032578 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 690 174 8 8 chr6 146383225 146383346 -36031896 + FRAM SINE Alu 50 170 -6 776 192 25 0 chr6 146383503 146383623 -36031619 - FLAM_A SINE Alu -9 124 2 775 282 47 55 chr6 146383624 146383986 -36031256 - L1MEd LINE L1 -5740 379 21 781 327 160 35 chr6 146384239 146385150 -36030092 + L2 LINE L2 1947 2971 -343 527 141 0 13 chr6 146385150 146385228 -36030014 - AluJ/FLAM SINE Alu -234 78 2 300 120 0 0 chr6 146385705 146385755 -36029487 + (T)n Simple_repeat Simple_repeat 1 50 0 3439 184 51 12 chr6 146386335 146387315 -36027927 + L1MB8 LINE L1 4656 5675 -503 845 194 0 7 chr6 146387320 146387475 -36027767 + FRAM SINE Alu 6 159 -17 2498 159 55 27 chr6 146387475 146387989 -36027253 + L1MB8 LINE L1 5651 6178 0 413 347 97 0 chr6 146388013 146388189 -36027053 + MERVL LTR ERVL 4072 4264 -1221 774 314 50 28 chr6 146388392 146388816 -36026426 + MERVL LTR ERVL 4460 4892 -872 320 288 29 71 chr6 146389109 146389279 -36025963 + MERVL LTR ERVL 5273 5435 -329 2122 115 0 0 chr6 146389582 146389861 -36025381 + AluSx SINE Alu 1 279 -33 273 29 0 0 chr6 146389861 146389895 -36025347 + (CA)n Simple_repeat Simple_repeat 1 34 0 302 330 49 35 chr6 146389911 146390114 -36025128 + MIR SINE MIR 22 227 -35 1997 159 24 89 chr6 146390531 146390989 -36024253 - MSTC LTR MaLR 0 428 1 28 0 0 0 chr6 146391697 146391725 -36023517 + AT_rich Low_complexity Low_complexity 1 28 0 348 188 106 24 chr6 146391896 146391938 -36023304 - MER69 DNA AcHobo 0 2526 2489 2342 155 61 38 chr6 146391938 146392383 -36022859 - MSTB2 LTR MaLR -2 455 1 348 188 106 24 chr6 146392383 146392425 -36022817 - MER69 DNA AcHobo -37 2489 2435 278 188 0 0 chr6 146392434 146392482 -36022760 - MER69 DNA AcHobo -1177 49 2 209 244 0 0 chr6 146393288 146393333 -36021909 - L2 LINE L2 -3 3310 3266 280 247 41 41 chr6 146393854 146393927 -36021315 + MER5A DNA MER1_type 111 183 -6 2378 68 3 7 chr6 146394578 146394872 -36020370 - AluSq SINE Alu -20 293 1 511 300 65 5 chr6 146394882 146395082 -36020160 + L2 LINE L2 2817 3028 -285 442 291 89 30 chr6 146395534 146395737 -36019505 - MIR SINE MIR -32 230 16 610 299 54 0 chr6 146395876 146396060 -36019182 - MIR SINE MIR -10 252 59 753 263 122 0 chr6 146396376 146396581 -36018661 - MIR SINE MIR -32 230 1 360 148 0 0 chr6 146396620 146396681 -36018561 + (GA)n Simple_repeat Simple_repeat 2 62 0 1274 156 10 0 chr6 146397938 146398130 -36017112 - LTR47A LTR ERVL 0 452 259 707 226 118 41 chr6 146398221 146398617 -36016625 + LTR30 LTR ERV1 105 595 0 6321 286 37 49 chr6 146398617 146400935 -36014307 + HERV3 LTR ERV1 1 2289 -6137 684 219 19 19 chr6 146400927 146401082 -36014160 + HERV3 LTR ERV1 2905 3059 -5676 * 13785 267 32 35 chr6 146401078 146405503 -36009739 + HERV15 LTR ERV1 4324 8735 0 708 238 114 38 chr6 146405591 146405975 -36009267 + LTR30 LTR ERV1 105 493 0 * 1367 164 86 4 chr6 146405975 146406217 -36009025 - LTR47A LTR ERVL -190 262 1 334 339 33 8 chr6 146406396 146406517 -36008725 - L2 LINE L2 -7 3306 3183 435 199 66 29 chr6 146408062 146408198 -36007044 + L1MC5 LINE L1 7642 7782 -179 1894 136 0 14 chr6 146408339 146408652 -36006590 + AluSx SINE Alu 1 309 0 428 303 12 36 chr6 146408767 146408932 -36006310 - MIR SINE MIR -75 187 27 543 235 26 9 chr6 146409038 146409153 -36006089 - L2 LINE L2 -1 3271 3155 26 0 0 0 chr6 146409750 146409776 -36005466 + AT_rich Low_complexity Low_complexity 1 26 0 855 155 0 27 chr6 146409823 146409971 -36005271 - L1PB3 LINE L1 0 6154 6011 1350 278 100 7 chr6 146410057 146410778 -36004464 + L2 LINE L2 2523 3308 -5 385 322 75 29 chr6 146411171 146411516 -36003726 - L1M4 LINE L1 -2694 3452 3092 312 91 0 0 chr6 146411655 146411699 -36003543 + (T)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr6 146412094 146412115 -36003127 + AT_rich Low_complexity Low_complexity 1 21 0 2710 111 11 3 chr6 146412869 146413230 -36002012 + THE1B LTR MaLR 1 364 0 234 214 18 0 chr6 146413230 146413286 -36001956 + MIR SINE MIR 113 169 -93 24 32 0 0 chr6 146413793 146413824 -36001418 + AT_rich Low_complexity Low_complexity 1 31 0 206 227 45 0 chr6 146413830 146413918 -36001324 + (TA)n Simple_repeat Simple_repeat 1 92 0 989 258 141 16 chr6 146414001 146414526 -36000716 - L2 LINE L2 -13 3300 2726 2223 142 9 0 chr6 146414613 146414957 -36000285 + LTR43 LTR ERV1 64 410 -192 1860 128 23 8 chr6 146414961 146415227 -36000015 + AluSx SINE Alu 10 279 -33 2307 134 36 9 chr6 146415268 146415948 -35999294 - MER4B-int LTR ERV1 -27 6731 5992 1084 97 0 7 chr6 146415967 146416112 -35999130 - MER61D LTR ERV1 -244 257 114 13770 167 61 32 chr6 146416153 146419375 -35995867 - HUERS-P3b LTR ERV1 0 6940 2657 1097 103 0 0 chr6 146419381 146419526 -35995716 - AluSp/q SINE Alu -2 311 167 2642 143 15 2 chr6 146419530 146420001 -35995241 - HUERS-P3b LTR ERV1 -3832 3556 921 * 4247 166 20 25 chr6 146419997 146421122 -35994120 - MER4B-int LTR ERV1 -391 4826 3697 408 215 0 0 chr6 146421122 146421201 -35994041 - MADE1 DNA Mariner 0 80 2 4247 166 20 25 chr6 146421201 146421262 -35993980 - MER4B-int LTR ERV1 -1520 3697 695 573 193 0 9 chr6 146421310 146421424 -35993818 - MER4B-int LTR ERV1 -4839 378 266 20842 119 68 40 chr6 146421860 146423887 -35991355 - MER4B-int LTR ERV1 -2363 4395 2426 2274 97 7 0 chr6 146423887 146424177 -35991065 - AluSq SINE Alu -21 292 1 20842 119 68 40 chr6 146424177 146424971 -35990271 - MER4B-int LTR ERV1 -4332 2426 1656 2308 129 86 8 chr6 146424971 146425365 -35989877 - MSTA LTR MaLR 0 428 4 20842 119 68 40 chr6 146425365 146426609 -35988633 - MER4B-int LTR ERV1 -5102 1656 215 1251 229 38 22 chr6 146426684 146427003 -35988239 - MER4B-int LTR ERV1 -4163 2168 1845 327 114 0 114 chr6 146427052 146427140 -35988102 - MER4B-int LTR ERV1 -5770 828 751 2415 107 140 64 chr6 146427205 146427718 -35987524 - MER4B-int LTR ERV1 -6035 563 12 3784 102 20 66 chr6 146427728 146428367 -35986875 - MER4B LTR ERV1 0 610 1 737 144 110 0 chr6 146428367 146428540 -35986702 + MER65A LTR ERV1 254 445 0 2317 95 7 0 chr6 146429349 146429644 -35985598 - AluSc SINE Alu -12 297 1 1069 71 0 0 chr6 146430303 146430430 -35984812 + AluY SINE Alu 1 127 -184 1563 189 11 7 chr6 146430519 146430794 -35984448 + AluJb SINE Alu 21 296 -16 1867 202 66 14 chr6 146430975 146431416 -35983826 + MLT1C LTR MaLR 4 467 0 328 283 50 17 chr6 146431417 146431537 -35983705 + L1ME LINE L1 4944 5067 -1079 255 217 66 26 chr6 146431842 146431918 -35983324 + L1ME LINE L1 5496 5574 -547 3008 63 2 24 chr6 146434126 146434539 -35980703 + MLT2A1 LTR ERVL 1 404 -40 317 83 68 54 chr6 146434543 146434822 -35980420 + (TATAA)n Simple_repeat Simple_repeat 1 283 0 21 36 0 0 chr6 146434822 146434850 -35980392 + AT_rich Low_complexity Low_complexity 1 28 0 306 33 149 9 chr6 146434872 146434929 -35980313 + MLT2A1 LTR ERVL 387 444 0 2347 104 0 0 chr6 146436642 146436950 -35978292 + AluSc SINE Alu 1 308 -1 387 0 0 0 chr6 146437852 146437895 -35977347 + (CA)n Simple_repeat Simple_repeat 2 44 0 227 252 90 32 chr6 146437944 146438099 -35977143 + L1ME4a LINE L1 5930 6093 -28 21 57 0 0 chr6 146438227 146438262 -35976980 + AT_rich Low_complexity Low_complexity 1 35 0 297 301 0 24 chr6 146440298 146440381 -35974861 + L2 LINE L2 3183 3263 -9 1227 145 66 26 chr6 146441022 146441249 -35973993 - MER46A DNA MER2_type 0 236 1 2645 77 8 3 chr6 146442704 146443057 -35972185 + THE1A LTR MaLR 1 355 0 11611 88 15 2 chr6 146443057 146444614 -35970628 + THE1A-int LTR MaLR 1 1578 -2 2696 82 6 6 chr6 146444616 146444971 -35970271 + THE1A LTR MaLR 1 355 0 1264 161 121 0 chr6 146445318 146445542 -35969700 + AluJb SINE Alu 1 251 -61 1060 172 9 69 chr6 146446270 146446503 -35968739 + MER20 DNA MER1_type 1 219 0 639 260 60 19 chr6 146447211 146447476 -35967766 - MLT1-int LTR MaLR -769 602 327 2152 120 0 0 chr6 146447521 146447805 -35967437 - AluSg SINE Alu -26 284 1 401 343 10 39 chr6 146449740 146449944 -35965298 - L3 LINE CR1 -605 972 775 24 53 0 0 chr6 146450217 146450255 -35964987 + AT_rich Low_complexity Low_complexity 1 38 0 508 299 18 0 chr6 146450266 146450430 -35964812 - MIR SINE MIR 0 262 96 267 93 0 0 chr6 146450934 146450977 -35964265 + (CA)n Simple_repeat Simple_repeat 1 43 0 1854 125 40 4 chr6 146450979 146451251 -35963991 - AluJb SINE Alu -30 282 1 393 272 120 19 chr6 146453320 146453478 -35961764 + MIR SINE MIR 7 180 -82 977 175 212 31 chr6 146453920 146454212 -35961030 - MER7A DNA MER2_type 0 346 4 256 353 49 0 chr6 146454990 146455092 -35960150 - MIR3 SINE MIR -21 187 81 307 239 116 39 chr6 146455367 146455522 -35959720 + L2 LINE L2 3062 3228 -85 524 258 123 18 chr6 146455672 146455835 -35959407 - MER5A DNA MER1_type 0 189 10 1061 251 85 42 chr6 146456030 146456440 -35958802 - LTR16A LTR ERVL 0 450 23 459 298 18 133 chr6 146456518 146456771 -35958471 - L2 LINE L2 0 3272 3064 2008 147 0 47 chr6 146456771 146456944 -35958298 - AluJo SINE Alu -6 306 153 1731 147 72 0 chr6 146456944 146457223 -35958019 - AluJb SINE Alu -13 299 1 2008 147 0 47 chr6 146457223 146457368 -35957874 - AluJo SINE Alu -159 153 3 459 298 18 133 chr6 146457368 146457446 -35957796 - L2 LINE L2 -208 3064 2979 185 211 83 150 chr6 146457619 146457752 -35957490 - MER5A DNA MER1_type -62 127 4 28 95 0 0 chr6 146458099 146458183 -35957059 + AT_rich Low_complexity Low_complexity 1 84 0 212 271 157 0 chr6 146458368 146458438 -35956804 + L2 LINE L2 3225 3305 -8 296 289 13 0 chr6 146458947 146459023 -35956219 + MLT1J LTR MaLR 110 186 -325 414 260 85 55 chr6 146459182 146459417 -35955825 + MLT1L LTR MaLR 351 592 -23 234 0 0 0 chr6 146459418 146459444 -35955798 + (T)n Simple_repeat Simple_repeat 1 26 0 2213 121 3 0 chr6 146459815 146460120 -35955122 + AluSg SINE Alu 1 306 -4 306 276 24 53 chr6 146460865 146461035 -35954207 + LTR68 LTR ERV1 1 165 -575 295 216 86 43 chr6 146461211 146461350 -35953892 + LTR68 LTR ERV1 290 434 -306 634 210 52 80 chr6 146461688 146461742 -35953500 + MER39 LTR ERV1 260 314 -393 2256 99 0 3 chr6 146461742 146462034 -35953208 + AluSx SINE Alu 1 291 -21 634 210 52 80 chr6 146462034 146462384 -35952858 + MER39 LTR ERV1 314 707 0 620 284 40 27 chr6 146462690 146462915 -35952327 + MIR SINE MIR 1 228 -34 1759 166 42 0 chr6 146463838 146464121 -35951121 + AluJo SINE Alu 4 298 -14 776 286 41 5 chr6 146464127 146464347 -35950895 + MIR SINE MIR 35 262 0 207 0 0 0 chr6 146465588 146465611 -35949631 + (GA)n Simple_repeat Simple_repeat 2 24 0 259 287 14 49 chr6 146466096 146466239 -35949003 - MLT1K LTR MaLR -370 218 81 1003 179 10 30 chr6 146466367 146466568 -35948674 - MLT2D LTR ERVL -1 413 217 1061 200 25 52 chr6 146467589 146467914 -35947328 + MER33 DNA MER1_type 7 322 -2 299 172 0 3 chr6 146468232 146468298 -35946944 - L1ME3A LINE L1 -245 5924 5857 221 0 35 0 chr6 146468533 146468562 -35946680 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1659 162 7 0 chr6 146468564 146468836 -35946406 - AluJb SINE Alu -37 275 2 199 343 33 61 chr6 146469004 146469185 -35946057 - MIR SINE MIR -26 236 61 436 229 46 27 chr6 146470317 146470564 -35944678 - L1ME3A LINE L1 -17 6153 5869 23 0 0 0 chr6 146470825 146470848 -35944394 + AT_rich Low_complexity Low_complexity 1 23 0 1490 195 7 7 chr6 146470857 146471139 -35944103 - AluJo SINE Alu -24 288 7 315 253 69 17 chr6 146471146 146471320 -35943922 - L1ME3A LINE L1 -262 5859 5677 252 263 25 12 chr6 146471323 146471403 -35943839 + CT-rich Low_complexity Low_complexity 4 84 0 333 269 51 0 chr6 146471404 146471482 -35943760 - L2 LINE L2 -25 3288 3207 2472 74 0 13 chr6 146471505 146471814 -35943428 - AluY SINE Alu -6 305 1 2362 219 44 31 chr6 146471833 146472537 -35942705 - L1ME1 LINE L1 -5 6161 5449 1776 250 199 47 chr6 146473183 146473994 -35941248 + L2 LINE L2 1905 2838 -476 658 232 7 7 chr6 146473994 146474145 -35941097 - MER45A DNA AcHobo 0 178 28 438 333 81 5 chr6 146474163 146474349 -35940893 + L2 LINE L2 2830 3029 -284 1698 136 79 11 chr6 146474596 146474875 -35940367 + AluJb SINE Alu 13 310 -2 567 281 103 25 chr6 146475119 146475322 -35939920 + MIR SINE MIR 21 239 -23 889 184 40 0 chr6 146475568 146475720 -35939522 - AluJo/FRAM SINE Alu -14 298 141 1046 158 48 62 chr6 146475721 146475930 -35939312 - AluJo SINE Alu -106 206 1 2135 108 3 10 chr6 146475941 146476238 -35939004 - AluSx SINE Alu -17 295 1 189 0 0 0 chr6 146477261 146477282 -35937960 + (T)n Simple_repeat Simple_repeat 1 21 0 254 254 232 7 chr6 146478042 146478180 -35937062 + L2 LINE L2 3145 3313 0 228 327 39 45 chr6 146478443 146478599 -35936643 + MIR3 SINE MIR 37 191 -17 199 340 124 20 chr6 146478773 146478926 -35936316 - MIR SINE MIR -89 173 5 248 313 121 42 chr6 146478946 146479112 -35936130 - MIR SINE MIR -4 258 80 299 253 11 0 chr6 146479161 146479248 -35935994 - ERVL LTR ERVL -419 5345 5258 2220 129 3 0 chr6 146479288 146479599 -35935643 - AluSx SINE Alu 0 312 1 255 224 0 0 chr6 146479611 146479669 -35935573 - ERVL LTR ERVL -451 5203 5146 435 308 40 71 chr6 146479744 146480225 -35935017 - MER34 LTR ERV1 -76 466 1 894 124 7 0 chr6 146480228 146480373 -35934869 + MER34B LTR ERV1 375 520 -45 1287 169 15 86 chr6 146481225 146481652 -35933590 - MER1B DNA MER1_type 0 339 1 23 0 0 0 chr6 146481734 146481757 -35933485 + AT_rich Low_complexity Low_complexity 1 23 0 536 278 91 5 chr6 146482721 146482908 -35932334 - MIR SINE MIR -59 203 1 529 275 44 12 chr6 146483549 146483709 -35931533 + MIR SINE MIR 98 262 0 2277 180 0 0 chr6 146484001 146484402 -35930840 - MER57A LTR ERV1 0 403 3 865 176 13 8 chr6 146484516 146484831 -35930411 - MLT1A1 LTR MaLR 0 365 1 249 313 23 15 chr6 146485100 146485231 -35930011 + LTR33 LTR ERVL 11 142 -379 2500 81 0 0 chr6 146485587 146485896 -35929346 + AluY SINE Alu 1 309 -2 231 313 60 0 chr6 146486329 146486463 -35928779 - HAL1 LINE L1 -939 1568 1427 491 244 125 58 chr6 146486555 146486932 -35928310 - L1MEd LINE L1 -4890 1229 828 224 233 0 0 chr6 146486933 146486976 -35928266 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 2120 143 3 20 chr6 146486976 146487326 -35927916 + MER2 DNA MER2_type 1 344 0 313 383 43 25 chr6 146487326 146487488 -35927754 - L1MEd LINE L1 -5507 612 448 358 217 42 33 chr6 146487488 146487608 -35927634 + CT-rich Low_complexity Low_complexity 1 121 0 1418 189 71 57 chr6 146487608 146488046 -35927196 + MER31B LTR ERV1 2 445 -21 2148 147 54 7 chr6 146488186 146488593 -35926649 - L1MB1 LINE L1 -204 5985 5560 814 181 24 0 chr6 146488609 146488775 -35926467 - L1MB1 LINE L1 -1336 4810 4641 532 172 13 40 chr6 146489044 146489195 -35926047 - L1MB7 LINE L1 -7 6177 6031 1780 136 13 36 chr6 146489822 146490123 -35925119 - AluSq SINE Alu -19 294 1 1893 147 92 3 chr6 146490269 146490551 -35924691 - MER4C LTR ERV1 -1 464 142 2480 84 37 50 chr6 146490551 146490933 -35924309 - MER51B LTR ERV1 0 377 1 1893 147 92 3 chr6 146490933 146491010 -35924232 - MER4C LTR ERV1 -323 142 73 543 194 19 0 chr6 146491152 146491260 -35923982 + MLT1A1 LTR MaLR 2 111 -254 774 142 19 123 chr6 146491265 146491387 -35923855 + MLT1A1 LTR MaLR 229 324 -41 1946 147 0 16 chr6 146491387 146491693 -35923549 - AluSx SINE Alu -11 301 1 774 142 19 123 chr6 146491693 146491732 -35923510 + MLT1A1 LTR MaLR 324 365 0 269 270 45 11 chr6 146492128 146492217 -35923025 - MER5B DNA MER1_type -4 174 83 275 208 14 42 chr6 146492144 146492216 -35923026 + MER5A DNA MER1_type 32 101 -88 198 0 0 0 chr6 146492698 146492720 -35922522 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 941 193 15 0 chr6 146492802 146493004 -35922238 - MER3 DNA MER1_type 0 209 5 2132 178 44 36 chr6 146493467 146493966 -35921276 + MLT1D LTR MaLR 1 503 -2 399 277 66 24 chr6 146494935 146495101 -35920141 - L2 LINE L2 -184 3088 2916 418 246 98 16 chr6 146495376 146495498 -35919744 + MIR3 SINE MIR 74 205 -3 363 233 114 4 chr6 146495557 146495672 -35919570 + MIR SINE MIR 46 173 -80 2474 69 16 96 chr6 146496209 146496659 -35918583 - MER11A LTR ERVK 0 1266 853 337 120 0 0 chr6 146496650 146496700 -35918542 - MER11A LTR ERVK -636 630 581 * 22 56 0 0 chr6 146497445 146497481 -35917761 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 146498630 146498651 -35916591 + AT_rich Low_complexity Low_complexity 1 21 0 309 285 64 94 chr6 146499729 146500059 -35915183 - MLT1K LTR MaLR -183 405 86 287 352 98 13 chr6 146500288 146500524 -35914718 - MLT1H LTR MaLR -200 349 94 400 312 81 16 chr6 146500621 146500807 -35914435 + L1M4 LINE L1 4590 4787 -1359 236 346 129 0 chr6 146500964 146501065 -35914177 + L2 LINE L2 3200 3313 0 29 90 0 0 chr6 146501607 146501685 -35913557 + AT_rich Low_complexity Low_complexity 1 78 0 189 0 0 0 chr6 146502827 146502848 -35912394 + (A)n Simple_repeat Simple_repeat 1 21 0 2119 110 40 37 chr6 146503800 146504174 -35911068 - THE1C LTR MaLR 0 375 1 318 273 10 10 chr6 146504175 146504274 -35910968 - L3b LINE CR1 -190 1393 1295 915 223 10 5 chr6 146505172 146505365 -35909877 - AluJo SINE Alu -118 194 1 217 386 23 9 chr6 146506477 146506692 -35908550 + L2 LINE L2 1752 1969 -1345 748 232 61 71 chr6 146506694 146506803 -35908439 - L2 LINE L2 -4 3268 3159 2209 103 0 40 chr6 146506803 146507124 -35908118 - AluSq SINE Alu -5 308 1 748 232 61 71 chr6 146507124 146507402 -35907840 - L2 LINE L2 -113 3159 2791 26 30 0 0 chr6 146508249 146508282 -35906960 + AT_rich Low_complexity Low_complexity 1 33 0 2168 121 0 19 chr6 146508557 146508872 -35906370 + AluSg SINE Alu 1 309 -1 327 154 0 0 chr6 146508883 146508935 -35906307 + AluYb8 SINE Alu 135 186 -122 * 1756 127 23 58 chr6 146508928 146509051 -35906191 - MER46B DNA MER2_type -2521 210 84 2188 102 85 20 chr6 146509051 146509393 -35905849 + THE1B LTR MaLR 1 364 0 1756 127 23 58 chr6 146509393 146509463 -35905779 - MER46B DNA MER2_type -2647 84 156 1823 165 0 44 chr6 146509463 146509779 -35905463 - AluJb SINE Alu -10 302 1 1756 127 23 58 chr6 146509779 146509930 -35905312 - MER46B DNA MER2_type -2574 157 2 947 264 99 29 chr6 146510219 146510564 -35904678 + MLT1E LTR MaLR 4 372 -221 346 225 11 11 chr6 146510571 146510660 -35904582 + MER34 LTR ERV1 1 89 -453 1269 218 63 23 chr6 146510672 146511113 -35904129 + LTR29 LTR ERV1 137 595 -27 2493 155 112 30 chr6 146511120 146511820 -35903422 + MER4E LTR ERV1 1 779 0 516 174 258 18 chr6 146511856 146512023 -35903219 + MLT1E LTR MaLR 376 582 -11 334 325 96 6 chr6 146512424 146512581 -35902661 + MIR SINE MIR 35 205 -57 2436 142 63 35 chr6 146512805 146513371 -35901871 + MER4B LTR ERV1 1 749 -30 410 278 154 44 chr6 146513530 146513757 -35901485 + MIR SINE MIR 3 254 -8 302 229 107 41 chr6 146514834 146514956 -35900286 + MER39 LTR ERV1 8 137 -570 * 1217 210 74 60 chr6 146514933 146515366 -35899876 + MER39 LTR ERV1 264 702 -5 388 293 27 14 chr6 146515630 146515777 -35899465 + MLT1I LTR MaLR 1 149 -260 257 222 61 20 chr6 146515787 146515886 -35899356 - MER34 LTR ERV1 -5 537 435 1105 228 74 50 chr6 146516576 146517048 -35898194 - MER39 LTR ERV1 0 687 9 3834 147 24 10 chr6 146517090 146517791 -35897451 - MER50 LTR ERV1 -23 711 1 2315 75 3 23 chr6 146517805 146518113 -35897129 - AluY SINE Alu -9 302 1 227 234 0 62 chr6 146518465 146518529 -35896713 - L2 LINE L2 0 3313 3254 961 133 0 32 chr6 146518535 146518693 -35896549 + MER93b LTR ERV1 5 157 -216 243 154 0 0 chr6 146518689 146518728 -35896514 + MER93b LTR ERV1 113 151 -222 * 984 212 87 4 chr6 146518771 146519012 -35896230 + MER93b LTR ERV1 113 373 0 2956 62 5 3 chr6 146519191 146519562 -35895680 + THE1C LTR MaLR 1 372 -3 716 205 68 137 chr6 146520157 146520450 -35894792 + LTR40a LTR ERVL 1 272 -247 833 269 41 51 chr6 146520450 146520862 -35894380 - LTR38 LTR ERV1 0 556 149 738 250 50 17 chr6 146520939 146521179 -35894063 + LTR40a LTR ERVL 272 519 0 3735 91 12 4 chr6 146521471 146521978 -35893264 - MER9 LTR ERVK 0 511 1 271 309 0 0 chr6 146522299 146522367 -35892875 + MIR SINE MIR 1 68 -194 301 119 0 0 chr6 146522369 146522411 -35892831 + 5S rRNA rRNA 1 42 -79 852 211 29 25 chr6 146522411 146522615 -35892627 + MIR SINE MIR 58 262 0 200 111 133 22 chr6 146522875 146522920 -35892322 - L2 LINE L2 0 3272 3223 3055 139 169 10 chr6 146523012 146523622 -35891620 + MER39 LTR ERV1 1 707 0 180 0 0 0 chr6 146523982 146524002 -35891240 + (TG)n Simple_repeat Simple_repeat 2 21 0 372 333 0 10 chr6 146524828 146524930 -35890312 - MIR3 SINE MIR -21 187 87 374 384 18 0 chr6 146525024 146525188 -35890054 - L3b LINE CR1 -124 1459 1293 217 333 40 10 chr6 146525316 146525415 -35889827 + L2 LINE L2 2422 2523 -791 226 232 0 43 chr6 146525551 146525620 -35889622 - MLT1I LTR MaLR -35 374 309 388 320 15 41 chr6 146525695 146525892 -35889350 - MLT1I LTR MaLR -120 289 98 342 327 68 51 chr6 146526079 146526560 -35888682 + L2 LINE L2 2763 3270 -2 243 61 0 0 chr6 146527350 146527383 -35887859 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 602 205 8 8 chr6 146527532 146527694 -35887548 + FLAM_A SINE Alu 1 133 0 310 298 79 18 chr6 146527812 146527926 -35887316 + L2 LINE L2 3138 3258 -14 350 295 16 9 chr6 146528396 146528532 -35886710 + MER34 LTR ERV1 1 108 -434 669 189 35 142 chr6 146528559 146528811 -35886431 + MER39 LTR ERV1 310 518 -189 2213 86 0 0 chr6 146528811 146529114 -35886128 + AluY SINE Alu 3 305 0 669 189 35 142 chr6 146529114 146529204 -35886038 + MER39 LTR ERV1 518 616 -91 753 163 0 0 chr6 146529204 146529327 -35885915 - AluJ SINE Alu -2 310 188 772 177 0 0 chr6 146529329 146529453 -35885789 - AluJ SINE Alu -188 124 1 245 221 58 23 chr6 146529453 146529539 -35885703 + MER34B LTR ERV1 477 565 0 250 322 76 47 chr6 146529539 146529775 -35885467 + L2 LINE L2 2818 3060 -212 243 0 0 0 chr6 146529785 146529812 -35885430 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 852 233 31 14 chr6 146530421 146530644 -35884598 + MIR SINE MIR 33 259 -3 923 211 19 10 chr6 146532978 146533187 -35882055 - MER20 DNA MER1_type -8 211 1 832 158 22 0 chr6 146533490 146533629 -35881613 - AluSx SINE Alu -22 290 149 635 81 12 0 chr6 146533629 146533715 -35881527 - AluSx SINE Alu -225 87 1 192 384 0 23 chr6 146533864 146533950 -35881292 - MIR SINE MIR -116 146 63 270 0 0 0 chr6 146534999 146535029 -35880213 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr6 146535974 146536005 -35879237 + AT_rich Low_complexity Low_complexity 1 31 0 309 26 0 0 chr6 146536404 146536442 -35878800 + (TG)n Simple_repeat Simple_repeat 2 39 0 293 202 32 0 chr6 146537518 146537612 -35877630 + (TA)n Simple_repeat Simple_repeat 2 98 0 366 257 103 78 chr6 146540315 146540751 -35874491 + MLT1J2 LTR MaLR 4 450 0 24 0 0 0 chr6 146540773 146540797 -35874445 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 146540987 146541016 -35874226 + AT_rich Low_complexity Low_complexity 1 29 0 401 295 35 40 chr6 146542284 146542457 -35872785 + MIR SINE MIR 21 192 -70 247 257 36 45 chr6 146543077 146543203 -35872039 + MIR3 SINE MIR 1 154 -108 327 252 183 35 chr6 146543373 146543488 -35871754 + MIR3 SINE MIR 28 159 -49 431 274 40 24 chr6 146543495 146543619 -35871623 + MER5B DNA MER1_type 1 126 -52 1968 220 195 43 chr6 146543688 146544831 -35870411 - L1MC4 LINE L1 -142 7900 6504 1835 147 10 29 chr6 146546029 146546342 -35868900 - AluSx SINE Alu -5 307 1 2136 104 3 23 chr6 146546409 146546716 -35868526 - AluSp SINE Alu -12 301 1 339 78 0 0 chr6 146549938 146549989 -35865253 + (GA)n Simple_repeat Simple_repeat 1 51 0 250 268 66 71 chr6 146551479 146551677 -35863565 + LTR33 LTR ERVL 21 217 -304 2081 123 92 53 chr6 146552637 146552819 -35862423 - L1MC2 LINE L1 -194 6150 5977 1926 121 61 0 chr6 146552819 146553099 -35862143 - AluSg SINE Alu -13 297 1 2081 123 92 53 chr6 146553099 146553370 -35861872 - L1MC2 LINE L1 -367 5977 5679 24 53 0 0 chr6 146553837 146553875 -35861367 + AT_rich Low_complexity Low_complexity 1 38 0 906 48 0 48 chr6 146553943 146554069 -35861173 + L1PA8 LINE L1 6048 6167 -5 257 300 40 67 chr6 146554284 146554453 -35860789 - MIR SINE MIR -74 188 5 457 324 117 9 chr6 146554965 146555178 -35860064 + MIR SINE MIR 1 236 -26 393 311 124 46 chr6 146555180 146555421 -35859821 - MIR SINE MIR -1 261 2 23 33 0 0 chr6 146555962 146555992 -35859250 + AT_rich Low_complexity Low_complexity 1 30 0 255 61 0 0 chr6 146557851 146557884 -35857358 + (TG)n Simple_repeat Simple_repeat 2 34 0 356 203 14 0 chr6 146564313 146564382 -35850860 - MER2 DNA MER2_type -8 337 268 904 170 0 0 chr6 146564391 146564526 -35850716 + AluSq/x SINE Alu 1 135 -178 1971 177 0 0 chr6 146564526 146564825 -35850417 + AluSx SINE Alu 1 299 -13 1172 160 0 24 chr6 146564869 146565081 -35850161 - MER2 DNA MER2_type -138 207 1 298 188 175 0 chr6 146565468 146565548 -35849694 + MIR SINE MIR 132 225 -37 328 375 144 0 chr6 146565641 146565801 -35849441 - MIR3 SINE MIR -25 183 1 611 290 166 0 chr6 146567001 146567218 -35848024 + MIR SINE MIR 2 254 -8 1575 175 21 18 chr6 146567219 146567504 -35847738 - AluJo SINE Alu -20 292 7 47 0 0 0 chr6 146568669 146568716 -35846526 + GC_rich Low_complexity Low_complexity 1 47 0 385 325 82 88 chr6 146568899 146569777 -35845465 - L1M2 LINE L1 -5594 1255 383 409 320 6 22 chr6 146570223 146570404 -35844838 + CT-rich Low_complexity Low_complexity 2 179 0 197 122 146 0 chr6 146570721 146570762 -35844480 - L2 LINE L2 0 3272 3226 3055 139 169 10 chr6 146570858 146571468 -35843774 + MER39 LTR ERV1 1 707 0 180 0 0 0 chr6 146571828 146571848 -35843394 + (TG)n Simple_repeat Simple_repeat 2 21 0 372 333 0 10 chr6 146572674 146572776 -35842466 - MIR3 SINE MIR -21 187 87 374 384 18 0 chr6 146572870 146573034 -35842208 - L3b LINE CR1 -124 1459 1293 217 333 40 10 chr6 146573162 146573261 -35841981 + L2 LINE L2 2422 2523 -791 226 232 0 43 chr6 146573397 146573466 -35841776 - MLT1I LTR MaLR -35 374 309 388 320 15 41 chr6 146573541 146573738 -35841504 - MLT1I LTR MaLR -120 289 98 342 327 68 51 chr6 146573925 146574406 -35840836 + L2 LINE L2 2763 3270 -2 243 61 0 0 chr6 146575196 146575229 -35840013 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 602 205 8 8 chr6 146575378 146575540 -35839702 + FLAM_A SINE Alu 1 133 0 310 298 79 18 chr6 146575658 146575772 -35839470 + L2 LINE L2 3138 3258 -14 350 295 16 9 chr6 146576242 146576378 -35838864 + MER34 LTR ERV1 1 108 -434 669 189 35 142 chr6 146576405 146576657 -35838585 + MER39 LTR ERV1 310 518 -189 2213 86 0 0 chr6 146576657 146576960 -35838282 + AluY SINE Alu 3 305 0 669 189 35 142 chr6 146576960 146577050 -35838192 + MER39 LTR ERV1 518 616 -91 753 163 0 0 chr6 146577050 146577173 -35838069 - AluJ SINE Alu -2 310 188 772 177 0 0 chr6 146577175 146577299 -35837943 - AluJ SINE Alu -188 124 1 245 221 58 23 chr6 146577299 146577385 -35837857 + MER34B LTR ERV1 477 565 0 250 322 76 47 chr6 146577385 146577621 -35837621 + L2 LINE L2 2818 3060 -212 243 0 0 0 chr6 146577631 146577658 -35837584 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 852 233 31 14 chr6 146578267 146578490 -35836752 + MIR SINE MIR 33 259 -3 923 211 19 10 chr6 146580824 146581033 -35834209 - MER20 DNA MER1_type -8 211 1 832 158 22 0 chr6 146581336 146581475 -35833767 - AluSx SINE Alu -22 288 147 635 81 12 0 chr6 146581475 146581561 -35833681 - AluSx SINE Alu -225 87 1 192 384 0 23 chr6 146581710 146581796 -35833446 - MIR SINE MIR -116 146 63 270 0 0 0 chr6 146582845 146582875 -35832367 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr6 146583820 146583851 -35831391 + AT_rich Low_complexity Low_complexity 1 31 0 309 26 0 0 chr6 146584250 146584288 -35830954 + (TG)n Simple_repeat Simple_repeat 2 39 0 293 202 32 0 chr6 146585364 146585458 -35829784 + (TA)n Simple_repeat Simple_repeat 2 98 0 366 257 103 78 chr6 146588161 146588597 -35826645 + MLT1J2 LTR MaLR 4 450 0 24 0 0 0 chr6 146588619 146588643 -35826599 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 146588833 146588862 -35826380 + AT_rich Low_complexity Low_complexity 1 29 0 401 295 35 40 chr6 146590130 146590303 -35824939 + MIR SINE MIR 21 192 -70 247 257 36 45 chr6 146590923 146591049 -35824193 + MIR3 SINE MIR 1 154 -108 327 252 183 35 chr6 146591219 146591334 -35823908 + MIR3 SINE MIR 28 159 -49 431 274 40 24 chr6 146591341 146591465 -35823777 + MER5B DNA MER1_type 1 126 -52 1968 220 195 43 chr6 146591534 146592677 -35822565 - L1MC4 LINE L1 -142 7900 6504 1835 147 10 29 chr6 146593875 146594188 -35821054 - AluSx SINE Alu -5 307 1 2136 104 3 23 chr6 146594255 146594562 -35820680 - AluSp SINE Alu -12 301 1 339 78 0 0 chr6 146597784 146597835 -35817407 + (GA)n Simple_repeat Simple_repeat 1 51 0 250 268 66 71 chr6 146599325 146599523 -35815719 + LTR33 LTR ERVL 21 217 -304 2081 123 92 53 chr6 146600483 146600665 -35814577 - L1MC2 LINE L1 -194 6150 5977 1926 121 61 0 chr6 146600665 146600945 -35814297 - AluSg SINE Alu -13 297 1 2081 123 92 53 chr6 146600945 146601216 -35814026 - L1MC2 LINE L1 -367 5977 5679 24 53 0 0 chr6 146601683 146601721 -35813521 + AT_rich Low_complexity Low_complexity 1 38 0 906 48 0 48 chr6 146601789 146601915 -35813327 + L1PA8 LINE L1 6048 6167 -5 257 300 40 67 chr6 146602130 146602299 -35812943 - MIR SINE MIR -74 188 5 457 324 117 9 chr6 146602811 146603024 -35812218 + MIR SINE MIR 1 236 -26 393 311 124 46 chr6 146603026 146603267 -35811975 - MIR SINE MIR -1 261 2 23 33 0 0 chr6 146603808 146603838 -35811404 + AT_rich Low_complexity Low_complexity 1 30 0 255 61 0 0 chr6 146605697 146605730 -35809512 + (TG)n Simple_repeat Simple_repeat 2 34 0 356 203 14 0 chr6 146612159 146612228 -35803014 - MER2 DNA MER2_type -8 337 268 904 170 0 0 chr6 146612237 146612372 -35802870 + AluSq/x SINE Alu 1 135 -178 1971 177 0 0 chr6 146612372 146612671 -35802571 + AluSx SINE Alu 1 299 -13 1172 160 0 24 chr6 146612715 146612927 -35802315 - MER2 DNA MER2_type -138 207 1 298 188 175 0 chr6 146613314 146613394 -35801848 + MIR SINE MIR 132 225 -37 328 375 144 0 chr6 146613487 146613647 -35801595 - MIR3 SINE MIR -25 183 1 611 290 166 0 chr6 146614847 146615064 -35800178 + MIR SINE MIR 2 254 -8 1934 166 10 0 chr6 146615065 146615354 -35799888 - AluJo SINE Alu -20 292 1 2447 106 3 0 chr6 146615454 146615766 -35799476 + AluSp SINE Alu 1 313 0 1896 182 0 3 chr6 146616472 146616780 -35798462 - AluJb SINE Alu -5 307 1 189 309 106 0 chr6 146619328 146619422 -35795820 + MIR SINE MIR 85 188 -74 26 0 0 0 chr6 146620678 146620704 -35794538 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr6 146620991 146621015 -35794227 + AT_rich Low_complexity Low_complexity 1 24 0 201 220 60 0 chr6 146621523 146621573 -35793669 - MIR SINE MIR -111 151 99 225 291 0 0 chr6 146623057 146623112 -35792130 - MER5A DNA MER1_type -74 115 61 1269 105 0 0 chr6 146623132 146623294 -35791948 + AluSc SINE Alu 1 162 -147 331 268 12 12 chr6 146623978 146624060 -35791182 - L2 LINE L2 -36 3236 3155 2257 112 0 0 chr6 146624309 146624612 -35790630 - AluSx SINE Alu -9 303 1 211 304 120 0 chr6 146624971 146625063 -35790179 + L2 LINE L2 2679 2781 -533 506 259 31 6 chr6 146625072 146625234 -35790008 - MER103 DNA DNA 0 166 1 291 314 59 0 chr6 146625459 146625561 -35789681 - MIR3 SINE MIR -24 184 77 1088 154 89 42 chr6 146625699 146626054 -35789188 - MER33 DNA MER1_type 0 324 1 1129 156 27 54 chr6 146626062 146626286 -35788956 + MER20 DNA MER1_type 1 218 -1 2281 55 41 7 chr6 146626422 146626713 -35788529 + AluY SINE Alu 1 301 -10 202 337 0 0 chr6 146626880 146626966 -35788276 + A-rich Low_complexity Low_complexity 1 86 0 23 68 0 0 chr6 146629062 146629106 -35786136 + AT_rich Low_complexity Low_complexity 1 44 0 277 311 88 7 chr6 146631687 146631835 -35783407 - MER117 DNA MER1_type -37 160 1 251 355 89 6 chr6 146631914 146632083 -35783159 + L3b LINE CR1 1392 1574 -9 223 362 76 19 chr6 146632315 146632525 -35782717 + L2 LINE L2 2958 3179 -134 191 200 86 0 chr6 146632604 146632639 -35782603 + L2 LINE L2 3163 3200 -72 436 220 52 92 chr6 146632662 146632759 -35782483 + MER5B DNA MER1_type 12 111 -67 1582 184 32 62 chr6 146632759 146633161 -35782081 - MLT1B LTR MaLR 0 390 1 436 220 52 92 chr6 146633161 146633212 -35782030 + MER5B DNA MER1_type 111 155 -23 1579 164 56 90 chr6 146633212 146633658 -35781584 - MSTB1 LTR MaLR -1 431 1 436 220 52 92 chr6 146633658 146633681 -35781561 + MER5B DNA MER1_type 155 177 -1 390 281 152 17 chr6 146634308 146634486 -35780756 + MIR SINE MIR 25 226 -36 1588 179 134 8 chr6 146635023 146635381 -35779861 - MER57A LTR ERV1 0 403 1 1446 158 11 8 chr6 146635381 146635646 -35779596 - MER57A-int LTR ERV1 0 7537 7272 743 107 25 8 chr6 146635648 146635769 -35779473 - LTR54B LTR ERV1 -373 125 3 7280 149 16 29 chr6 146635775 146637107 -35778135 - MER57A-int LTR ERV1 -397 7140 5826 6473 167 35 35 chr6 146637430 146639503 -35775739 - MER57A-int LTR ERV1 -1583 4748 1753 779 191 0 102 chr6 146639640 146639865 -35775377 - MER57A-int LTR ERV1 -2884 3447 3246 436 196 23 151 chr6 146639958 146640177 -35775065 - MER57A-int LTR ERV1 -3732 1391 1201 276 182 0 0 chr6 146640348 146640403 -35774839 - MER34C LTR ERV1 -373 212 158 2130 149 6 8 chr6 146640420 146640776 -35774466 + THE1A LTR MaLR 1 355 0 3884 170 35 48 chr6 146640985 146641745 -35773497 - MER57A-int LTR ERV1 -6688 849 100 2494 52 0 3 chr6 146641745 146642050 -35773192 + AluY SINE Alu 1 304 -7 3884 170 35 48 chr6 146642050 146642149 -35773093 - MER57A-int LTR ERV1 -7437 100 1 2221 162 36 0 chr6 146642149 146642538 -35772704 - MER57A LTR ERV1 0 403 1 257 324 41 6 chr6 146642959 146643129 -35772113 + L1MEd LINE L1 926 1101 -5018 267 278 56 8 chr6 146643673 146643799 -35771443 + L1ME LINE L1 5607 5738 -383 2962 197 15 41 chr6 146643824 146645264 -35769978 + L1MA9 LINE L1 4654 5992 -320 229 267 67 9 chr6 146645276 146645381 -35769861 + L1ME LINE L1 5774 5884 -237 5396 108 1 1 chr6 146645501 146646308 -35768934 - L1PA13 LINE L1 -3 6160 5354 1728 176 3 14 chr6 146647377 146647673 -35767569 - AluJo SINE Alu -19 293 1 516 32 0 0 chr6 146647689 146647751 -35767491 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 2158 111 13 3 chr6 146647751 146648057 -35767185 - AluSq SINE Alu -4 309 1 1864 154 0 71 chr6 146648547 146648872 -35766370 - AluJo SINE Alu -10 302 1 554 330 72 8 chr6 146649509 146649745 -35765497 + MIR SINE MIR 4 254 -8 284 312 43 43 chr6 146650056 146650287 -35764955 - L2 LINE L2 -1395 1919 1689 972 153 34 68 chr6 146650534 146650797 -35764445 + MLT1B LTR MaLR 6 312 -84 2389 92 60 17 chr6 146650797 146651146 -35764096 - THE1B LTR MaLR 0 364 1 972 153 34 68 chr6 146651146 146651217 -35764025 + MLT1B LTR MaLR 312 384 -12 3322 122 9 31 chr6 146651711 146652250 -35762992 + MER1A DNA MER1_type 1 527 0 1689 193 10 3 chr6 146652972 146653272 -35761970 + AluJb SINE Alu 1 302 -10 484 234 82 113 chr6 146655435 146655691 -35759551 + MIR SINE MIR 13 260 -2 1802 159 0 0 chr6 146656207 146656478 -35758764 - AluJb SINE Alu -21 291 21 318 319 22 0 chr6 146657065 146657156 -35758086 + MIR SINE MIR 58 150 -58 186 103 0 0 chr6 146657314 146657343 -35757899 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 287 268 34 34 chr6 146657579 146657696 -35757546 + L1ME3 LINE L1 5716 5835 -327 2025 141 0 10 chr6 146657696 146657994 -35757248 + AluSq SINE Alu 1 295 -18 287 268 34 34 chr6 146657994 146658055 -35757187 + L1ME3 LINE L1 5834 5894 -268 911 112 0 22 chr6 146659206 146659340 -35755902 + FLAM_C SINE Alu 1 131 -2 24 0 0 0 chr6 146659922 146659946 -35755296 + AT_rich Low_complexity Low_complexity 1 24 0 1989 151 3 13 chr6 146660313 146660618 -35754624 - AluJb SINE Alu -10 302 1 24 0 0 0 chr6 146660886 146660910 -35754332 + AT_rich Low_complexity Low_complexity 1 24 0 2004 123 28 0 chr6 146661865 146662150 -35753092 - AluY SINE Alu -18 293 1 700 309 71 39 chr6 146662171 146662634 -35752608 + L2 LINE L2 2831 3308 -5 554 296 63 0 chr6 146662658 146662817 -35752425 + MIR SINE MIR 88 256 -6 261 75 0 0 chr6 146665243 146665283 -35749959 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 326 324 63 75 chr6 146668089 146668407 -35746835 - L2 LINE L2 0 3272 2959 1811 118 4 36 chr6 146669235 146669515 -35745727 - AluSq SINE Alu -5 308 38 6240 84 19 6 chr6 146670362 146672366 -35742876 - L1PA14 LINE L1 -2 6159 4146 4410 45 0 0 chr6 146672747 146673281 -35741961 - L1PA5 LINE L1 -2 6152 5619 1684 166 45 52 chr6 146674395 146674999 -35740243 + LTR48B LTR ERV1 1 787 0 357 121 0 0 chr6 146680347 146680405 -35734837 + ORSL DNA AcHobo 9 66 -209 253 227 113 10 chr6 146680447 146680544 -35734698 + ORSL DNA AcHobo 169 275 0 373 274 82 30 chr6 146681636 146681771 -35733471 - MIR SINE MIR -57 205 64 364 191 37 118 chr6 146682261 146682397 -35732845 + MLT1J2 LTR MaLR 27 151 -299 387 307 14 21 chr6 146682838 146682978 -35732264 + MLT1K LTR MaLR 11 149 -439 1652 164 87 52 chr6 146683015 146683504 -35731738 + MER39 LTR ERV1 1 589 -118 2071 71 3 71 chr6 146683504 146683814 -35731428 + AluY SINE Alu 1 289 -22 1652 164 87 52 chr6 146683814 146683895 -35731347 + MER39 LTR ERV1 589 666 -41 371 266 153 54 chr6 146683899 146684140 -35731102 + MLT1K LTR MaLR 186 450 -138 1330 82 0 0 chr6 146684470 146684654 -35730588 + L1MA5 LINE L1 6115 6298 -2 2234 127 3 0 chr6 146684669 146684977 -35730265 + AluSx SINE Alu 1 309 -3 324 264 55 9 chr6 146685154 146685264 -35729978 + L3 LINE CR1 1355 1469 -108 2541 127 40 19 chr6 146685804 146686229 -35729013 + MER57B LTR ERV1 1 434 0 376 223 165 0 chr6 146686759 146686862 -35728380 + L2 LINE L2 3184 3303 -10 214 377 79 35 chr6 146687043 146687157 -35728085 - L2 LINE L2 -27 3245 3127 353 173 8 87 chr6 146687211 146687338 -35727904 + L1ME3 LINE L1 6046 6162 0 197 240 13 0 chr6 146688289 146688364 -35726878 + CT-rich Low_complexity Low_complexity 1 76 0 1658 155 30 36 chr6 146689144 146689448 -35725794 - AluJb SINE Alu -10 302 1 1233 198 103 43 chr6 146689974 146690449 -35724793 - MER39 LTR ERV1 0 707 32 327 248 0 79 chr6 146690682 146690783 -35724459 + MIR SINE MIR 19 111 -151 1057 175 4 103 chr6 146691306 146691497 -35723745 - AluJo SINE Alu -3 309 147 453 81 0 0 chr6 146691497 146691559 -35723683 + (CA)n Simple_repeat Simple_repeat 2 63 0 1057 175 4 103 chr6 146691559 146691619 -35723623 - AluJo SINE Alu -165 147 83 311 0 26 0 chr6 146691836 146691875 -35723367 + (CA)n Simple_repeat Simple_repeat 1 40 0 325 209 61 61 chr6 146696871 146696986 -35718256 - L2 LINE L2 0 3313 3199 268 318 114 15 chr6 146697579 146697711 -35717531 + L3 LINE CR1 857 1001 -576 1099 325 167 26 chr6 146697820 146698651 -35716591 - L3 LINE CR1 -11 1566 619 402 329 44 40 chr6 146698701 146698953 -35716289 - MIR SINE MIR -7 255 3 248 328 0 8 chr6 146699398 146699520 -35715722 - L1MA9 LINE L1 -305 5826 5706 2250 128 29 63 chr6 146699524 146699932 -35715310 + L1MA9 LINE L1 5852 6243 -69 1936 128 3 17 chr6 146699932 146700230 -35715012 + AluSx SINE Alu 1 294 -18 2250 128 29 63 chr6 146700230 146700298 -35714944 + L1MA9 LINE L1 6243 6312 0 273 325 6 0 chr6 146700804 146700964 -35714278 - L1M2 LINE L1 -848 5464 5304 607 172 8 0 chr6 146700968 146701090 -35714152 + L1MA7 LINE L1 6017 6139 -152 6012 144 31 2 chr6 146701096 146702862 -35712380 - L1MA5 LINE L1 -2 6298 4495 247 346 81 16 chr6 146703215 146703400 -35711842 + L2 LINE L2 2129 2325 -989 542 283 127 19 chr6 146703424 146703636 -35711606 - MIR SINE MIR -26 236 2 9815 182 39 16 chr6 146704136 146704826 -35710416 - L1 LINE L1 -1634 5214 4541 2258 96 3 7 chr6 146704826 146705127 -35710115 - AluSx SINE Alu -12 300 1 9815 182 39 16 chr6 146705127 146708455 -35706787 - L1 LINE L1 -2307 4541 1103 1915 176 6 0 chr6 146708450 146708785 -35706457 - L1 LINE L1 -6512 337 1 * 188 351 41 73 chr6 146708926 146709242 -35706000 + L2 LINE L2 2291 2596 -718 180 0 0 0 chr6 146709318 146709338 -35705904 + (A)n Simple_repeat Simple_repeat 1 20 0 704 137 86 7 chr6 146709349 146709488 -35705754 + L1MB3 LINE L1 6030 6179 -4 2666 234 73 56 chr6 146709719 146709807 -35705435 - L1ME1 LINE L1 0 6100 6015 2006 139 0 7 chr6 146709807 146710108 -35705134 + AluSx SINE Alu 1 299 -13 2666 234 73 56 chr6 146710108 146711830 -35703412 - L1ME1 LINE L1 -85 6015 4263 264 256 11 11 chr6 146713121 146713211 -35702031 - L1ME1 LINE L1 -4573 1507 1418 1065 253 105 3 chr6 146713247 146713543 -35701699 - MLT1F1 LTR MaLR -47 520 195 524 295 81 39 chr6 146713588 146714121 -35701121 - L1ME1 LINE L1 -4781 1301 829 2337 104 0 0 chr6 146714121 146714429 -35700813 - AluSq SINE Alu -5 308 1 524 295 81 39 chr6 146714429 146714747 -35700495 - L1ME1 LINE L1 -5253 829 526 1654 134 101 8 chr6 146715120 146715388 -35699854 + AluJb SINE Alu 20 312 0 2161 114 7 0 chr6 146715911 146716201 -35699041 - AluSx SINE Alu -20 292 1 22 106 0 0 chr6 146716484 146716569 -35698673 + AT_rich Low_complexity Low_complexity 1 85 0 454 225 161 110 chr6 146717055 146717291 -35697951 + MIR SINE MIR 13 260 -2 314 115 246 0 chr6 146717508 146717569 -35697673 + AluSg SINE Alu 20 95 -205 2817 78 8 13 chr6 146717782 146718178 -35697064 - L1PA13 LINE L1 -2 6161 5768 1933 191 137 21 chr6 146718996 146719038 -35696204 - MLT2B1 LTR ERVL 0 520 484 619 12 25 0 chr6 146719038 146719118 -35696124 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 414 0 0 0 chr6 146719120 146719166 -35696076 + (TG)n Simple_repeat Simple_repeat 1 46 0 1933 191 137 21 chr6 146719166 146719586 -35695656 - MLT2B1 LTR ERVL -36 484 1 1292 208 86 6 chr6 146719931 146720244 -35694998 - MER58B DNA MER1_type -3 338 1 3829 90 0 4 chr6 146720678 146721191 -35694051 + MER9 LTR ERVK 1 511 0 1129 175 5 0 chr6 146721782 146721993 -35693249 - MLT1C LTR MaLR -234 233 22 180 0 0 0 chr6 146722043 146722063 -35693179 + (T)n Simple_repeat Simple_repeat 1 20 0 311 228 40 0 chr6 146722223 146722324 -35692918 + (TA)n Simple_repeat Simple_repeat 1 105 0 337 271 87 47 chr6 146722327 146722981 -35692261 - L1MEc LINE L1 -2382 3833 3154 335 265 73 60 chr6 146722982 146723216 -35692026 - L1MEc LINE L1 -3119 3096 2860 2649 107 11 5 chr6 146723877 146724250 -35690992 - THE1C LTR MaLR 0 375 1 2268 192 11 2 chr6 146724255 146724697 -35690545 - MLT1C LTR MaLR 0 467 22 212 0 36 0 chr6 146724749 146724777 -35690465 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1067 89 0 0 chr6 146724823 146724958 -35690284 + AluSq/x SINE Alu 1 135 -178 2014 134 14 0 chr6 146724958 146725250 -35689992 + AluSx SINE Alu 1 296 -16 295 250 180 23 chr6 146725494 146725629 -35689613 - L1MEc LINE L1 -4380 2016 1847 2326 171 14 30 chr6 146725629 146726068 -35689174 - MSTB1 LTR MaLR 0 432 1 295 250 180 23 chr6 146726068 146726104 -35689138 - L1MEc LINE L1 -4549 1847 1818 * 1714 241 47 35 chr6 146726070 146726267 -35688975 + L1MEc LINE L1 2014 2207 -4008 1931 156 0 0 chr6 146726267 146726550 -35688692 + AluSx SINE Alu 1 283 -29 419 174 0 0 chr6 146726550 146726573 -35688669 + AluSq SINE Alu 1 306 0 1714 241 47 35 chr6 146726573 146727201 -35688041 + L1MEc LINE L1 2207 2814 -3401 1885 283 92 44 chr6 146727432 146728470 -35686772 + HERVL LTR ERVL 3838 4924 -730 620 307 57 14 chr6 146728616 146728899 -35686343 + HERVL LTR ERVL 5156 5450 -314 416 199 25 118 chr6 146729008 146729169 -35686073 + MER104 DNA Tc2 22 167 -13 3626 169 85 64 chr6 146729705 146730514 -35684728 - LTR1B LTR ERV1 0 826 1 21 0 0 0 chr6 146730709 146730730 -35684512 + AT_rich Low_complexity Low_complexity 1 21 0 547 243 97 80 chr6 146731369 146731631 -35683611 + MLT1H1 LTR MaLR 17 283 -272 1508 265 30 8 chr6 146731631 146732001 -35683241 - MER70A LTR ERVL -2 470 93 845 205 6 0 chr6 146732000 146732161 -35683081 - MER70A LTR ERVL -310 162 1 * 667 266 27 11 chr6 146732183 146732371 -35682871 + MLT1H1 LTR MaLR 293 483 -72 5700 117 33 64 chr6 146732375 146732819 -35682423 + Tigger3(Golem) DNA MER2_type 4 460 -2569 2247 117 3 0 chr6 146732819 146733119 -35682123 + AluSg SINE Alu 1 301 -9 5700 117 33 64 chr6 146733119 146733817 -35681425 + Tigger3(Golem) DNA MER2_type 460 3028 -1 391 213 0 0 chr6 146733817 146733891 -35681351 + MLT1H1 LTR MaLR 482 555 0 261 338 51 13 chr6 146734872 146735029 -35680213 - MIR SINE MIR -49 213 51 626 297 31 9 chr6 146735286 146735508 -35679734 - MIR SINE MIR -20 242 16 388 338 21 0 chr6 146735520 146735662 -35679580 + MIR SINE MIR 46 190 -72 276 53 0 0 chr6 146737238 146737276 -35677966 + (CATA)n Simple_repeat Simple_repeat 2 39 0 195 42 0 0 chr6 146739277 146739301 -35675941 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 180 0 0 0 chr6 146740725 146740745 -35674497 + (CAAG)n Simple_repeat Simple_repeat 2 21 0 1341 154 43 119 chr6 146740989 146741384 -35673858 + MLT1A1 LTR MaLR 1 365 0 1492 198 50 39 chr6 146741414 146741826 -35673416 + MLT1C LTR MaLR 45 467 0 449 298 43 6 chr6 146741999 146742160 -35673082 - MIR3 SINE MIR -3 205 39 212 286 48 38 chr6 146742167 146742272 -35672970 - L2 LINE L2 0 3272 3167 1399 190 100 13 chr6 146742374 146742684 -35672558 - MLT2C1 LTR ERVL -2 395 59 216 288 146 49 chr6 146742774 146743000 -35672242 + L2 LINE L2 3005 3252 -61 583 241 62 66 chr6 146743003 146743153 -35672089 + MIR SINE MIR 2 152 -110 1563 194 45 0 chr6 146743153 146743442 -35671800 + AluJb SINE Alu 1 302 -10 583 241 62 66 chr6 146743442 146743532 -35671710 + MIR SINE MIR 152 241 -21 207 417 9 0 chr6 146743895 146744010 -35671232 + L2 LINE L2 3139 3254 -18 390 325 37 12 chr6 146744203 146744366 -35670876 + MIR SINE MIR 17 183 -79 212 250 26 26 chr6 146744623 146744699 -35670543 - L3 LINE CR1 -13 1564 1489 2142 125 0 0 chr6 146745450 146745731 -35669511 + AluSx SINE Alu 1 281 -31 2091 65 0 0 chr6 146745731 146745977 -35669265 + AluY SINE Alu 60 305 -6 409 301 29 19 chr6 146746096 146746305 -35668937 + L1 LINE L1 4719 4929 -1217 2289 231 31 8 chr6 146746897 146747386 -35667856 + LTR40a LTR ERVL 1 500 -19 359 164 75 0 chr6 146747386 146747453 -35667789 - MER5A DNA MER1_type -117 72 1 755 190 31 6 chr6 146747463 146747626 -35667616 + MIR SINE MIR 75 241 -21 23 33 0 0 chr6 146748766 146748796 -35666446 + AT_rich Low_complexity Low_complexity 1 30 0 1282 148 0 0 chr6 146748928 146749138 -35666104 + L1PA16 LINE L1 5957 6166 0 198 208 125 0 chr6 146751582 146751654 -35663588 + L2 LINE L2 3188 3268 -4 201 94 0 0 chr6 146757021 146757053 -35658189 + (TC)n Simple_repeat Simple_repeat 1 32 0 231 36 0 0 chr6 146758281 146758309 -35656933 + (TGG)n Simple_repeat Simple_repeat 1 28 0 378 0 0 0 chr6 146762867 146762909 -35652333 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr6 146764316 146764341 -35650901 + AT_rich Low_complexity Low_complexity 1 25 0 203 86 35 35 chr6 146765798 146765856 -35649386 + (AATAG)n Simple_repeat Simple_repeat 3 60 0 254 368 32 0 chr6 146766863 146766988 -35648254 + MIR SINE MIR 63 191 -71 35 24 0 0 chr6 146767051 146767093 -35648149 + AT_rich Low_complexity Low_complexity 1 42 0 565 279 98 51 chr6 146767278 146767678 -35647564 + L1ME1 LINE L1 5532 5951 -219 1824 145 67 28 chr6 146767702 146768061 -35647181 - THE1C LTR MaLR 0 375 3 2208 129 0 0 chr6 146768353 146768648 -35646594 + AluSg SINE Alu 1 295 -15 770 228 0 25 chr6 146769050 146769208 -35646034 + FRAM SINE Alu 2 155 -11 864 311 77 16 chr6 146769348 146769792 -35645450 - ERVL LTR ERVL -398 5366 4896 1556 270 59 63 chr6 146771059 146771243 -35643999 - L2 LINE L2 0 3313 3130 207 0 0 0 chr6 146771243 146771266 -35643976 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 1556 270 59 63 chr6 146771266 146771521 -35643721 - L2 LINE L2 -183 3130 2875 2496 64 0 10 chr6 146771521 146771832 -35643410 + AluY SINE Alu 3 310 -1 1556 270 59 63 chr6 146771832 146772341 -35642901 - L2 LINE L2 -438 2875 2365 893 225 113 21 chr6 146772378 146772707 -35642535 + LTR37A LTR ERV1 50 408 -18 1369 132 46 82 chr6 146772853 146772920 -35642322 + L1MB2 LINE L1 5874 5942 -229 1345 187 101 8 chr6 146772920 146773177 -35642065 + AluJb SINE Alu 1 281 -31 1369 132 46 82 chr6 146773177 146773413 -35641829 + L1MB2 LINE L1 5942 6166 -5 1547 204 46 0 chr6 146773733 146774013 -35641229 + AluJo SINE Alu 1 293 -19 547 269 130 10 chr6 146774188 146774396 -35640846 - MIR SINE MIR -11 251 19 1195 253 10 3 chr6 146774447 146774743 -35640499 + L1MDa LINE L1 911 1208 -5332 924 156 12 24 chr6 146774744 146774911 -35640331 + FRAM SINE Alu 1 161 -15 988 211 38 8 chr6 146774918 146775013 -35640229 + L1MDa LINE L1 1203 1294 -5246 1216 209 95 0 chr6 146775013 146775286 -35639956 - AluJo SINE Alu -3 299 1 988 211 38 8 chr6 146775286 146775456 -35639786 + L1MDa LINE L1 1294 1476 -5064 2563 54 0 0 chr6 146775759 146776056 -35639186 - AluY SINE Alu -14 297 1 415 282 36 0 chr6 146776070 146776180 -35639062 - MIR3 SINE MIR -49 159 46 25 0 0 0 chr6 146776404 146776429 -35638813 + AT_rich Low_complexity Low_complexity 1 25 0 504 313 106 18 chr6 146778742 146778959 -35636283 - MIR SINE MIR -14 248 13 301 193 86 22 chr6 146779351 146779458 -35635784 + MIR SINE MIR 78 202 -6 1017 233 104 51 chr6 146779929 146780097 -35635145 + MER34C LTR ERV1 1 159 -426 2169 153 44 0 chr6 146780097 146780483 -35634759 - MER57A LTR ERV1 0 403 1 1017 233 104 51 chr6 146780483 146780747 -35634495 + MER34C LTR ERV1 159 456 -129 290 238 29 48 chr6 146780726 146780831 -35634411 + MER34 LTR ERV1 440 542 0 * 361 356 45 20 chr6 146780997 146781199 -35634043 + L3 LINE CR1 969 1175 -402 181 299 24 94 chr6 146783143 146783270 -35631972 - L2 LINE L2 -27 3286 3169 2215 60 3 7 chr6 146784338 146784643 -35630599 - AluY SINE Alu 0 304 1 527 214 14 0 chr6 146786754 146786899 -35628343 + CT-rich Low_complexity Low_complexity 4 150 0 506 218 0 18 chr6 146788189 146788299 -35626943 - AluY SINE Alu 0 311 204 * 786 186 83 0 chr6 146788294 146788450 -35626792 - AluJb SINE Alu -143 169 1 2270 89 7 0 chr6 146788462 146788754 -35626488 - AluSp SINE Alu -19 294 1 4365 178 35 33 chr6 146788781 146788936 -35626306 - L1MB3 LINE L1 -22 6161 6008 2121 118 3 3 chr6 146788936 146789224 -35626018 + AluSq SINE Alu 1 288 -25 4365 178 35 33 chr6 146789224 146789294 -35625948 - L1MB3 LINE L1 -175 6008 5940 3477 125 156 5 chr6 146789294 146789908 -35625334 - MER39 LTR ERV1 0 707 1 4365 178 35 33 chr6 146789908 146790075 -35625167 - L1MB3 LINE L1 -243 5940 5775 1562 177 148 19 chr6 146790075 146790454 -35624788 + MSTA LTR MaLR 1 428 0 4365 178 35 33 chr6 146790454 146790809 -35624433 - L1PA8 LINE L1 -408 5775 5422 2889 70 22 8 chr6 146790809 146791209 -35624033 + L1PA8 LINE L1 5767 6172 0 4365 178 35 33 chr6 146791209 146792273 -35622969 - L1MB3 LINE L1 -761 5422 4346 1016 97 5 32 chr6 146792513 146792698 -35622544 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1226 167 158 17 chr6 146792698 146792932 -35622310 - AluSg SINE Alu -32 278 12 210 265 0 0 chr6 146793958 146794007 -35621235 - MER91B DNA MER1_type -57 133 85 460 234 7 73 chr6 146794017 146794154 -35621088 - MER91B DNA MER1_type -61 129 2 633 296 6 6 chr6 146794169 146794338 -35620904 + L2 LINE L2 2433 2601 -713 831 179 0 0 chr6 146794390 146794535 -35620707 + MER58B DNA MER1_type 197 341 0 686 245 155 71 chr6 146794536 146794976 -35620266 + L2 LINE L2 2606 3113 -200 3697 83 24 0 chr6 146794976 146795480 -35619762 - L1PA10 LINE L1 -5 6163 5648 686 245 155 71 chr6 146795480 146795622 -35619620 + L2 LINE L2 3113 3242 -71 1985 213 43 91 chr6 146795711 146796402 -35618840 - LTR8 LTR ERV1 -4 687 30 2391 81 0 3 chr6 146797561 146797857 -35617385 + AluSg SINE Alu 1 295 -15 217 304 210 7 chr6 146798809 146798947 -35616295 + L2 LINE L2 2670 2835 -479 297 159 0 116 chr6 146799137 146799206 -35616036 + L2 LINE L2 3253 3313 0 564 169 0 0 chr6 146799262 146799351 -35615891 - FLAM_A SINE Alu -20 122 34 523 309 74 50 chr6 146799408 146799893 -35615349 + L2 LINE L2 1914 2410 -904 1527 156 19 63 chr6 146800050 146800365 -35614877 - AluJo SINE Alu -11 301 1 3552 301 81 45 chr6 146800448 146802376 -35612866 + L2 LINE L2 1141 3145 -168 2104 129 0 3 chr6 146802376 146802685 -35612557 - AluSx SINE Alu 0 308 1 3552 301 81 45 chr6 146802685 146802802 -35612440 + L2 LINE L2 3145 3256 -57 311 253 0 0 chr6 146802888 146802963 -35612279 + MLT1C LTR MaLR 194 268 -199 2001 75 54 65 chr6 146803002 146803296 -35611946 + AluSg SINE Alu 2 292 -18 586 343 80 26 chr6 146803374 146803908 -35611334 + HERV16 LTR ERVL 2454 3053 -2036 235 311 33 0 chr6 146803965 146804087 -35611155 + L1MB8 LINE L1 5476 5601 -563 304 301 75 23 chr6 146804207 146804340 -35610902 + L1MB8 LINE L1 5767 5906 -272 22 0 0 0 chr6 146805506 146805528 -35609714 + AT_rich Low_complexity Low_complexity 1 22 0 2438 159 18 51 chr6 146806778 146807324 -35607918 + L1MB2 LINE L1 5644 6171 0 222 118 0 0 chr6 146807675 146807709 -35607533 + (T)n Simple_repeat Simple_repeat 1 34 0 182 103 0 51 chr6 146807784 146807823 -35607419 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1208 163 0 0 chr6 146809819 146810015 -35605227 + MER2 DNA MER2_type 1 196 -149 27 49 0 0 chr6 146810015 146810056 -35605186 + AT_rich Low_complexity Low_complexity 1 41 0 225 139 0 0 chr6 146810303 146810346 -35604896 + (CAAAG)n Simple_repeat Simple_repeat 4 46 0 882 288 69 28 chr6 146810437 146810860 -35604382 + L1MC4a LINE L1 5506 5945 -1863 1543 174 23 3 chr6 146811012 146811316 -35603926 - L1MB5 LINE L1 -8 6166 5857 205 357 71 9 chr6 146812008 146812120 -35603122 - L3 LINE CR1 -39 1538 1420 549 261 0 0 chr6 146812152 146812263 -35602979 - MER81 DNA DNA -2 112 2 423 279 43 56 chr6 146812766 146812927 -35602315 - MER5B DNA MER1_type 0 178 20 207 0 0 0 chr6 146812936 146812959 -35602283 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2205 113 3 0 chr6 146812962 146813262 -35601980 - AluSx SINE Alu -11 301 1 297 278 46 37 chr6 146813348 146813456 -35601786 - MIR SINE MIR -48 214 106 1741 108 8 8 chr6 146813961 146814221 -35601021 + AluSx SINE Alu 43 302 0 326 217 33 8 chr6 146816606 146816726 -35598516 + CT-rich Low_complexity Low_complexity 5 127 0 258 325 177 33 chr6 146816918 146817161 -35598081 - L2 LINE L2 -188 3084 2807 183 42 0 0 chr6 146817826 146817850 -35597392 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 33 25 0 0 chr6 146817858 146817898 -35597344 + AT_rich Low_complexity Low_complexity 1 40 0 1833 128 113 3 chr6 146817900 146818219 -35597023 - L1PB1 LINE L1 -2 6865 6512 11620 208 53 14 chr6 146818239 146819048 -35596194 - L1PB1 LINE L1 -512 6355 5580 2184 136 3 0 chr6 146819048 146819357 -35595885 - AluSx SINE Alu -2 310 1 11620 208 53 14 chr6 146819357 146821364 -35593878 - L1PB1 LINE L1 -1287 5580 3654 2373 102 0 0 chr6 146821364 146821669 -35593573 - AluSq SINE Alu -8 305 1 11620 208 53 14 chr6 146821669 146821978 -35593264 - L1PB1 LINE L1 -3213 3654 3359 2189 137 0 0 chr6 146821978 146822278 -35592964 - AluSx SINE Alu -12 300 1 11620 208 53 14 chr6 146822278 146823961 -35591281 - L1PB1 LINE L1 -3508 3359 1337 3503 208 99 25 chr6 146823988 146825019 -35590223 - L1PB1 LINE L1 -5707 1156 50 520 280 66 22 chr6 146825456 146825787 -35589455 + L1MC4a LINE L1 5669 6008 -113 1866 164 3 31 chr6 146826148 146826465 -35588777 + AluSx SINE Alu 5 312 0 1933 243 73 14 chr6 146826494 146827120 -35588122 + MER63C DNA MER1_type 257 919 -11 1796 186 31 5 chr6 146827330 146827409 -35587833 + L1P LINE L1 4616 4691 -1455 192 40 0 0 chr6 146827409 146827434 -35587808 + (CAA)n Simple_repeat Simple_repeat 1 25 0 1796 186 31 5 chr6 146827434 146827741 -35587501 + L1P LINE L1 4691 5012 -1134 2261 100 0 13 chr6 146827853 146828016 -35587226 - AluSp SINE Alu -17 296 137 2402 78 3 3 chr6 146828016 146828322 -35586920 - AluY SINE Alu -5 306 1 2261 100 0 13 chr6 146828322 146828458 -35586784 - AluSp SINE Alu -176 137 1 21 0 0 0 chr6 146828803 146828824 -35586418 + AT_rich Low_complexity Low_complexity 1 21 0 6267 69 14 27 chr6 146828826 146829924 -35585318 - L1PA10 LINE L1 -4 6164 5041 301 284 15 0 chr6 146829924 146829991 -35585251 - L2 LINE L2 0 3313 3246 431 167 11 0 chr6 146830025 146830115 -35585127 + MER53 DNA DNA 95 185 -4 296 362 46 23 chr6 146830207 146830381 -35584861 - L2 LINE L2 -193 3079 2902 1697 160 86 25 chr6 146830940 146831334 -35583908 - LTR52 LTR ERVL -3 418 1 726 237 64 126 chr6 146831435 146831984 -35583258 - LTR33 LTR ERVL -2 519 5 405 0 0 0 chr6 146834077 146834122 -35581120 + (CA)n Simple_repeat Simple_repeat 2 46 0 244 312 13 0 chr6 146835333 146835410 -35579832 - L2 LINE L2 0 3313 3236 533 251 21 26 chr6 146835657 146835863 -35579379 - MER58 DNA MER1_type 0 2420 5 241 373 138 26 chr6 146836067 146836378 -35578864 - L2 LINE L2 -656 2658 2313 702 226 19 0 chr6 146836424 146836583 -35578659 - MIR SINE MIR -10 252 91 436 286 120 28 chr6 146836608 146836965 -35578277 - L2 LINE L2 -1065 2249 1860 430 339 121 46 chr6 146837015 146837726 -35577516 - L2 LINE L2 -2345 969 206 22 0 0 0 chr6 146837801 146837823 -35577419 + AT_rich Low_complexity Low_complexity 1 22 0 349 123 0 25 chr6 146839290 146839371 -35575871 + (TA)n Simple_repeat Simple_repeat 2 80 0 257 284 29 29 chr6 146839725 146839827 -35575415 + MIR SINE MIR 111 212 -50 408 278 36 72 chr6 146840172 146840366 -35574876 - L1ME4a LINE L1 -128 5993 5807 530 266 75 20 chr6 146841821 146842020 -35573222 + MER63A DNA MER1_type 1 210 0 212 147 0 0 chr6 146842674 146842708 -35572534 + (TG)n Simple_repeat Simple_repeat 2 35 0 283 306 35 0 chr6 146842764 146842937 -35572305 + (TA)n Simple_repeat Simple_repeat 1 179 0 465 202 11 0 chr6 146843916 146844005 -35571237 + MER58A DNA MER1_type 1 90 -17 181 379 92 0 chr6 146844074 146844161 -35571081 - L2 LINE L2 -49 3223 3129 243 351 42 42 chr6 146844275 146844540 -35570702 - L2 LINE L2 -338 2976 2712 2039 98 61 3 chr6 146845081 146845376 -35569866 - AluSx SINE Alu 0 312 1 304 277 136 41 chr6 146845413 146845752 -35569490 + L1ME4a LINE L1 5513 5883 -238 191 273 71 50 chr6 146846072 146846171 -35569071 - L2 LINE L2 -5 3308 3208 2310 112 0 6 chr6 146846299 146846611 -35568631 + AluSx SINE Alu 1 310 -2 1006 97 0 0 chr6 146846937 146847071 -35568171 + AluSg/x SINE Alu 149 282 -30 241 326 225 0 chr6 146847274 146847412 -35567830 - MIR SINE MIR -74 188 20 776 219 28 70 chr6 146847550 146847662 -35567580 - L1ME3A LINE L1 -22 6148 6033 2225 120 0 7 chr6 146847662 146847793 -35567449 + AluSx SINE Alu 1 131 -181 207 0 0 0 chr6 146847793 146847816 -35567426 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2225 120 0 7 chr6 146847816 146847993 -35567249 + AluSx SINE Alu 131 307 -5 776 219 28 70 chr6 146847993 146848028 -35567214 - L1ME3A LINE L1 -137 6033 5998 1475 176 67 29 chr6 146848028 146848402 -35566840 + MLT1B LTR MaLR 3 390 0 776 219 28 70 chr6 146848402 146848540 -35566702 - L1ME3A LINE L1 -172 5998 5874 2431 210 92 15 chr6 146848546 146849293 -35565949 - L1M4 LINE L1 -3134 3012 2208 303 71 0 0 chr6 146849474 146849516 -35565726 + (GA)n Simple_repeat Simple_repeat 1 42 0 420 283 33 17 chr6 146849604 146849724 -35565518 + MER5A DNA MER1_type 68 189 0 2180 105 3 0 chr6 146850046 146850342 -35564900 + AluSp SINE Alu 1 297 -16 340 230 14 14 chr6 146850604 146850678 -35564564 + L2 LINE L2 3235 3308 -5 381 299 58 77 chr6 146851216 146851490 -35563752 + L1PB4 LINE L1 231 499 -6351 231 339 85 0 chr6 146851678 146851796 -35563446 + L1PB4 LINE L1 830 957 -5893 268 321 56 25 chr6 146852256 146852452 -35562790 + L1PA15-16 LINE L1 1325 1526 -5323 449 232 0 0 chr6 146852486 146852585 -35562657 + L1PA15-16 LINE L1 1472 1570 -5279 * 8195 213 37 85 chr6 146852566 146855443 -35559799 + L1PB4 LINE L1 1338 4351 -2508 2523 111 17 8 chr6 146855443 146855804 -35559438 - THE1B LTR MaLR 0 364 1 10780 116 6 30 chr6 146855804 146857423 -35557819 - THE1B-int LTR MaLR 0 1580 2 2217 110 26 9 chr6 146857423 146857769 -35557473 - THE1B LTR MaLR -12 352 1 8195 213 37 85 chr6 146857769 146859952 -35555290 + L1PB4 LINE L1 4349 6634 -225 2068 102 4 0 chr6 146859952 146860226 -35555016 + AluSg SINE Alu 1 275 -35 984 18 0 0 chr6 146860229 146860343 -35554899 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 8195 213 37 85 chr6 146860343 146860720 -35554522 + L1PB4 LINE L1 6636 6856 -3 473 282 63 6 chr6 146860969 146861143 -35554099 - HsTC2 DNA Tc2 -1679 219 36 2114 142 116 13 chr6 146861161 146861549 -35553693 + MSTA LTR MaLR 1 428 0 1795 155 14 40 chr6 146862712 146863008 -35552234 + AluJo SINE Alu 1 288 -24 297 51 0 0 chr6 146863060 146863099 -35552143 + (CA)n Simple_repeat Simple_repeat 2 40 0 2337 97 0 3 chr6 146863344 146863642 -35551600 + AluSx SINE Alu 1 297 -15 180 77 0 0 chr6 146863657 146863683 -35551559 + (TA)n Simple_repeat Simple_repeat 1 26 0 2507 165 42 20 chr6 146863778 146864280 -35550962 + L1MC2 LINE L1 5831 6343 -1 22 80 0 0 chr6 146864846 146864896 -35550346 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr6 146865064 146865100 -35550142 + AT_rich Low_complexity Low_complexity 1 36 0 315 240 113 47 chr6 146867066 146867216 -35548026 + L1ME4a LINE L1 5953 6112 -9 829 229 24 31 chr6 146867572 146867814 -35547428 - MIR SINE MIR 0 262 27 300 357 113 37 chr6 146867772 146868287 -35546955 + L2 LINE L2 2234 2787 -527 * 2317 164 15 0 chr6 146869581 146869978 -35545264 + MER57A LTR ERV1 1 403 0 2026 105 0 69 chr6 146870021 146870316 -35544926 + AluSc SINE Alu 1 272 -37 225 0 0 0 chr6 146870316 146870341 -35544901 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2026 105 0 69 chr6 146870341 146870377 -35544865 + AluSc SINE Alu 272 309 0 236 296 0 0 chr6 146870377 146870431 -35544811 - L2 LINE L2 -18 3254 3201 316 198 12 12 chr6 146871213 146871294 -35543948 - LTR67 LTR ERVL -2 555 475 183 351 101 27 chr6 146871767 146871955 -35543287 + L3 LINE CR1 1039 1240 -337 1402 217 14 40 chr6 146872994 146873344 -35541898 + LTR40a LTR ERVL 170 510 -9 220 268 47 59 chr6 146873345 146873460 -35541782 + MER5A DNA MER1_type 47 178 0 306 111 0 19 chr6 146873768 146873822 -35541420 - LTR33A LTR ERVL -25 498 446 736 253 57 22 chr6 146873849 146874078 -35541164 - LTR40c LTR ERVL -228 237 1 1578 209 61 9 chr6 146874481 146874826 -35540416 + MLT1A1 LTR MaLR 3 365 0 215 31 31 0 chr6 146874873 146874905 -35540337 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1030 82 0 0 chr6 146874910 146875045 -35540197 - AluY SINE Alu -30 281 147 564 332 46 11 chr6 146875156 146875411 -35539831 + MIR SINE MIR 3 262 0 1011 147 9 81 chr6 146875851 146876062 -35539180 - MER58A DNA MER1_type -3 221 26 212 296 23 23 chr6 146876078 146876166 -35539076 - L2 LINE L2 -84 3229 3142 454 307 118 5 chr6 146879551 146879763 -35535479 + MIR SINE MIR 20 255 -7 396 299 39 0 chr6 146879824 146879951 -35535291 - MER94 DNA DNA 0 134 3 273 319 172 0 chr6 146880208 146880324 -35534918 - MIR SINE MIR -90 172 37 22 0 0 0 chr6 146880361 146880383 -35534859 + AT_rich Low_complexity Low_complexity 1 22 0 1940 143 25 0 chr6 146880450 146880736 -35534506 - AluSx SINE Alu -15 297 5 494 16 16 0 chr6 146881689 146881752 -35533490 + (CA)n Simple_repeat Simple_repeat 2 65 0 192 71 0 0 chr6 146882351 146882379 -35532863 - MIR SINE MIR -121 141 114 2601 238 94 14 chr6 146882891 146884370 -35530872 + L1MD2 LINE L1 4546 6149 -210 185 250 16 78 chr6 146884586 146884650 -35530592 - L2 LINE L2 -12 3260 3201 2216 96 0 3 chr6 146884680 146884983 -35530259 - AluY SINE Alu -9 302 1 254 303 49 68 chr6 146885136 146885298 -35529944 + L2 LINE L2 3137 3295 -18 2101 95 75 32 chr6 146886130 146886682 -35528560 + MER51A LTR ERV1 1 634 0 1967 160 0 0 chr6 146887740 146888022 -35527220 + AluJo SINE Alu 1 282 -30 35 41 0 0 chr6 146888024 146888073 -35527169 + AT_rich Low_complexity Low_complexity 1 49 0 260 30 0 0 chr6 146889321 146889354 -35525888 + MADE1 DNA Mariner 48 80 0 191 306 42 14 chr6 146890092 146890164 -35525078 + L2 LINE L2 3236 3309 -4 181 379 0 0 chr6 146890359 146890425 -35524817 - L2 LINE L2 -2 3311 3246 339 113 0 0 chr6 146890434 146890458 -35524784 + (CA)n Simple_repeat Simple_repeat 1 77 0 339 113 0 0 chr6 146890458 146890511 -35524731 + (CA)n Simple_repeat Simple_repeat 2 54 0 180 250 0 0 chr6 146890650 146890714 -35524528 + (TA)n Simple_repeat Simple_repeat 1 64 0 183 204 0 0 chr6 146890784 146890838 -35524404 + (TA)n Simple_repeat Simple_repeat 1 54 0 208 268 0 24 chr6 146890850 146890932 -35524310 + (TA)n Simple_repeat Simple_repeat 1 80 0 236 273 209 0 chr6 146891044 146891154 -35524088 + L2 LINE L2 3137 3269 -3 2483 69 0 7 chr6 146891390 146891696 -35523546 + AluY SINE Alu 1 304 -7 235 235 59 24 chr6 146891835 146891920 -35523322 - L1MC4 LINE L1 -1341 6701 6614 225 152 0 0 chr6 146891936 146891982 -35523260 - LTR66 LTR ERVL -171 439 394 215 275 0 50 chr6 146891982 146892062 -35523180 + (TA)n Simple_repeat Simple_repeat 2 77 0 227 200 0 0 chr6 146892063 146892118 -35523124 + L1MC4 LINE L1 6649 6703 -1339 189 175 0 0 chr6 146892201 146892241 -35523001 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1827 146 30 27 chr6 146892454 146892790 -35522452 + MER1B DNA MER1_type 1 337 0 1865 125 31 17 chr6 146892980 146893269 -35521973 + AluSx SINE Alu 1 293 -19 594 224 18 30 chr6 146894199 146894364 -35520878 - LTR33A LTR ERVL -24 499 337 1154 136 16 5 chr6 146894991 146895182 -35520060 - MER1B DNA MER1_type -28 311 119 2192 129 42 22 chr6 146895471 146895828 -35519414 - THE1B LTR MaLR 0 364 1 2067 130 7 0 chr6 146896068 146896368 -35518874 - AluSg SINE Alu -8 302 1 198 0 0 0 chr6 146896499 146896521 -35518721 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr6 146896569 146896604 -35518638 + AT_rich Low_complexity Low_complexity 1 35 0 2397 152 18 13 chr6 146896604 146897148 -35518094 - L1MA4A LINE L1 -23 6280 5673 1946 134 31 7 chr6 146897148 146897439 -35517803 - AluSx SINE Alu -14 298 1 763 300 70 0 chr6 146897451 146897681 -35517561 - MIR SINE MIR -14 248 3 263 313 12 0 chr6 146897912 146897992 -35517250 - L2 LINE L2 -6 3307 3227 420 252 195 14 chr6 146898010 146898220 -35517022 + MIR SINE MIR 15 262 0 203 338 19 64 chr6 146898560 146898717 -35516525 + MIR3 SINE MIR 44 193 -15 2112 145 23 30 chr6 146899123 146899522 -35515720 - Tigger2a DNA MER2_type -38 396 1 1270 96 24 10 chr6 146899524 146899732 -35515510 - L1MB2 LINE L1 -1 6170 5960 1522 119 24 4 chr6 146899734 146899985 -35515257 - L1MB2 LINE L1 -309 5859 5604 303 113 0 0 chr6 146901539 146901592 -35513650 + (GA)n Simple_repeat Simple_repeat 2 54 0 594 278 83 14 chr6 146901727 146901943 -35513299 + MIR SINE MIR 8 238 -24 228 67 0 0 chr6 146904423 146904453 -35510789 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 24 0 0 0 chr6 146904808 146904832 -35510410 + AT_rich Low_complexity Low_complexity 1 24 0 2290 94 3 3 chr6 146904875 146905182 -35510060 + AluSg SINE Alu 1 307 -3 358 260 35 101 chr6 146905299 146905468 -35509774 + MIR SINE MIR 59 216 -46 6173 73 55 8 chr6 146905881 146907039 -35508203 + L1PA11 LINE L1 4974 6173 -1 4199 160 76 51 chr6 146907263 146907996 -35507246 - L1MA5 LINE L1 -10 6992 6217 2420 80 0 0 chr6 146907996 146908297 -35506945 - AluY SINE Alu -10 301 1 4199 160 76 51 chr6 146908297 146908781 -35506461 - L1MA5 LINE L1 -785 6217 5746 2736 179 2 10 chr6 146908775 146909290 -35505952 - L1MA5 LINE L1 -6334 515 5 * 4922 134 26 8 chr6 146909292 146909668 -35505574 - L1MA4 LINE L1 -119 6181 5813 243 0 0 0 chr6 146909668 146909695 -35505547 + (TG)n Simple_repeat Simple_repeat 2 28 0 4922 134 26 8 chr6 146909695 146910208 -35505034 - L1MA4 LINE L1 -487 5813 5276 426 264 36 132 chr6 146910213 146910493 -35504749 + MIR SINE MIR 9 261 -1 200 274 24 24 chr6 146910540 146910624 -35504618 + GA-rich Low_complexity Low_complexity 4 87 0 681 273 33 12 chr6 146910849 146911062 -35504180 + MIR SINE MIR 17 242 -20 233 244 23 23 chr6 146911218 146911304 -35503938 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 260 277 12 24 chr6 146911403 146911486 -35503756 - MER90 LTR ERV1 -47 528 447 270 0 0 0 chr6 146911790 146911820 -35503422 + (TG)n Simple_repeat Simple_repeat 1 30 0 1636 180 0 4 chr6 146912087 146912359 -35502883 - AluJb SINE Alu 0 312 42 523 289 44 33 chr6 146912734 146912929 -35502313 - MIR SINE MIR -34 228 34 324 217 35 9 chr6 146912931 146913278 -35501964 + (TA)n Simple_repeat Simple_repeat 1 356 0 542 89 11 0 chr6 146913307 146913397 -35501845 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 1457 253 69 22 chr6 146913707 146914090 -35501152 + L1ME3A LINE L1 5584 6002 -168 2470 135 115 31 chr6 146914090 146914610 -35500632 + LTR6A LTR ERV1 1 564 0 1457 253 69 22 chr6 146914610 146914779 -35500463 + L1ME3A LINE L1 6002 6162 -8 1600 158 87 28 chr6 146915279 146915601 -35499641 + MER61A LTR ERV1 3 343 0 288 227 45 23 chr6 146915603 146915691 -35499551 + MER61A-int LTR ERV1 3 92 -5125 2399 105 97 107 chr6 146915948 146916482 -35498760 + MER61A-int LTR ERV1 246 774 -4443 * 14624 81 16 11 chr6 146916478 146918701 -35496541 + MER61A-int LTR ERV1 1320 3600 -1617 5938 120 55 20 chr6 146918700 146919689 -35495553 + MER61A-int LTR ERV1 4194 5216 -1 * 1556 167 94 16 chr6 146919689 146920007 -35495235 + MER61A LTR ERV1 1 343 0 389 303 137 51 chr6 146921123 146921591 -35493651 + L3 LINE CR1 206 713 -864 353 291 52 76 chr6 146921637 146921847 -35493395 + MIR SINE MIR 39 243 -19 457 324 80 17 chr6 146921897 146922135 -35493107 + L3 LINE CR1 787 1039 -538 402 242 0 20 chr6 146922206 146922305 -35492937 + MER5B DNA MER1_type 1 97 -81 525 370 96 16 chr6 146922305 146922692 -35492550 + L3 LINE CR1 1085 1502 -75 1374 163 5 0 chr6 146923956 146924171 -35491071 - AluJo SINE Alu -30 282 67 2147 100 0 0 chr6 146924190 146924501 -35490741 - AluSc SINE Alu 0 311 1 2187 112 0 7 chr6 146925341 146925627 -35489615 + AluSx SINE Alu 1 284 -28 189 74 0 0 chr6 146925637 146925664 -35489578 + (TAA)n Simple_repeat Simple_repeat 1 27 0 843 251 57 0 chr6 146925845 146926056 -35489186 - MER58A DNA MER1_type 0 224 2 2421 200 30 7 chr6 146927901 146928513 -35486729 - LTR65 LTR ERV1 0 669 1 222 351 0 0 chr6 146929031 146929105 -35486137 - MIR3 SINE MIR -43 165 92 249 163 0 0 chr6 146929874 146929923 -35485319 + A-rich Low_complexity Low_complexity 2 50 0 26 30 0 0 chr6 146930312 146930345 -35484897 + AT_rich Low_complexity Low_complexity 1 33 0 319 329 71 6 chr6 146930413 146930583 -35484659 - L2 LINE L2 0 3313 3133 8716 227 75 62 chr6 146930726 146930830 -35484412 - Zaphod DNA AcHobo -137 3894 3793 1956 98 4 0 chr6 146930830 146931085 -35484157 - AluSg SINE Alu -14 296 41 8716 227 75 62 chr6 146931085 146932710 -35482532 - Zaphod DNA AcHobo -238 3793 2190 6345 81 2 0 chr6 146932710 146934002 -35481240 - L1PA10 LINE L1 -6 6162 4889 8716 227 75 62 chr6 146934002 146936080 -35479162 - Zaphod DNA AcHobo -1841 2190 37 272 241 0 0 chr6 146936098 146936156 -35479086 - Zaphod DNA AcHobo -3965 66 9 312 272 56 80 chr6 146937284 146937409 -35477833 + L2 LINE L2 3151 3272 0 1358 213 87 8 chr6 146938314 146938681 -35476561 + MSTD LTR MaLR 1 396 0 23 54 0 0 chr6 146939169 146939206 -35476036 + AT_rich Low_complexity Low_complexity 1 37 0 1459 279 74 43 chr6 146939215 146940534 -35474708 + L1MC4 LINE L1 4316 5676 -811 1762 154 61 10 chr6 146940534 146940827 -35474415 + AluSg SINE Alu 1 308 -2 1459 279 74 43 chr6 146940827 146940899 -35474343 + L1MC4 LINE L1 5676 5744 -743 2692 229 140 97 chr6 146940983 146941939 -35473303 + L1MC4 LINE L1 5880 6794 -1248 2078 134 0 3 chr6 146941939 146942231 -35473011 + AluSg SINE Alu 1 291 -19 2692 229 140 97 chr6 146942231 146943033 -35472209 + L1MC4 LINE L1 6794 7811 -231 2281 127 0 0 chr6 146943033 146943341 -35471901 + AluSg SINE Alu 1 308 -2 2692 229 140 97 chr6 146943341 146943575 -35471667 + L1MC4 LINE L1 7811 8034 -8 187 323 77 0 chr6 146944562 146944627 -35470615 + MIR SINE MIR 58 127 -81 1654 180 24 0 chr6 146944645 146944940 -35470302 - AluJb SINE Alu -10 302 1 180 0 0 0 chr6 146944952 146944972 -35470270 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 350 337 82 46 chr6 146944972 146945278 -35469964 + L3 LINE CR1 1111 1427 -150 7109 57 0 2 chr6 146945387 146946775 -35468467 - L1PA6 LINE L1 -2 6152 4766 561 291 6 6 chr6 146946803 146946968 -35468274 - L3 LINE CR1 -571 1006 842 350 42 21 0 chr6 146947623 146947671 -35467571 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 215 399 19 19 chr6 146948618 146948826 -35466416 - L2 LINE L2 -554 2760 2553 185 283 0 19 chr6 146948964 146949017 -35466225 + L3 LINE CR1 1426 1477 -100 232 310 85 54 chr6 146949039 146949168 -35466074 - L3 LINE CR1 -64 1513 1381 1076 331 139 26 chr6 146949219 146950143 -35465099 - L3 LINE CR1 -319 1258 167 839 176 34 17 chr6 146950441 146950617 -35464625 - MER47A DNA MER2_type -187 179 1 803 130 0 0 chr6 146950654 146950792 -35464450 - L1PA13 LINE L1 -4 6159 6022 353 326 81 7 chr6 146951195 146951424 -35463818 + MIR SINE MIR 4 255 -7 1702 176 77 4 chr6 146953799 146954223 -35461019 + MLT2B1 LTR ERVL 6 507 -8 1068 150 4 115 chr6 146954223 146954393 -35460849 + ERVL-B2 LTR ERVL 1772 1907 -3857 1470 117 0 0 chr6 146954393 146954590 -35460652 - AluSc SINE Alu -7 302 106 1068 150 4 115 chr6 146954590 146954672 -35460570 + ERVL-B2 LTR ERVL 1907 1996 -3768 594 121 11 0 chr6 146954671 146954762 -35460480 + ERVL-B2 LTR ERVL 3289 3380 -2384 * 11836 147 22 1 chr6 146954759 146956740 -35458502 + ERVL-B2 LTR ERVL 3735 5757 -7 1905 200 136 4 chr6 146956740 146957195 -35458047 + MLT2B2 LTR ERVL 1 515 0 503 235 250 25 chr6 146957201 146957401 -35457841 + MIR SINE MIR 12 256 -6 271 109 0 0 chr6 146957599 146957645 -35457597 + L1MC1 LINE L1 6288 6333 0 408 309 26 11 chr6 146959664 146959855 -35455387 - MLT1L LTR MaLR -10 605 412 399 226 23 75 chr6 146959888 146960021 -35455221 - MLT1L LTR MaLR -338 277 152 291 289 87 29 chr6 146960189 146960293 -35454949 + MIR SINE MIR 44 153 -55 2336 80 13 0 chr6 146961031 146961332 -35453910 + AluSp SINE Alu 1 305 -8 180 0 0 0 chr6 146961345 146961365 -35453877 + (TTG)n Simple_repeat Simple_repeat 2 21 0 527 248 71 76 chr6 146961644 146961882 -35453360 + MIR SINE MIR 20 256 -6 911 131 0 0 chr6 146962798 146962928 -35452314 + FLAM_C SINE Alu 2 131 -2 269 374 80 12 chr6 146963485 146963648 -35451594 + MIR3 SINE MIR 30 203 -5 882 171 24 83 chr6 146964284 146964489 -35450753 + MER20 DNA MER1_type 27 219 0 332 336 13 27 chr6 146965125 146965274 -35449968 - L2 LINE L2 0 3313 3167 1404 237 60 96 chr6 146965516 146966474 -35448768 + L2 LINE L2 2368 3277 -36 964 25 64 14 chr6 146966487 146966773 -35448469 + (TAGA)n Simple_repeat Simple_repeat 1 300 0 27 0 0 0 chr6 146966810 146966837 -35448405 + AT_rich Low_complexity Low_complexity 1 27 0 1716 180 20 3 chr6 146966913 146967208 -35448034 - AluJb SINE Alu -12 300 1 201 74 0 0 chr6 146967254 146967281 -35447961 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 244 267 12 35 chr6 146967979 146968065 -35447177 + MLT1H LTR MaLR 152 235 -314 201 133 0 0 chr6 146969241 146969271 -35445971 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 476 141 0 6 chr6 146970123 146970350 -35444892 + AluJ SINE Alu 1 257 -55 261 0 0 0 chr6 146971144 146971173 -35444069 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 200 86 29 0 chr6 146971657 146971692 -35443550 + (AATAG)n Simple_repeat Simple_repeat 3 38 0 284 235 0 0 chr6 146972112 146972180 -35443062 - Charlie8 DNA MER1_type -10 2407 2340 1180 191 46 119 chr6 146972283 146972696 -35442546 + MLT1B LTR MaLR 4 386 -4 180 330 126 10 chr6 146973228 146973331 -35441911 - L2 LINE L2 -66 3247 3133 2400 86 0 0 chr6 146973740 146974043 -35441199 + AluSx SINE Alu 1 303 -9 1859 273 65 2 chr6 146974351 146975045 -35440197 - L2 LINE L2 -193 3120 2383 282 300 100 18 chr6 146975052 146975162 -35440080 - MIR SINE MIR -120 142 24 377 268 106 6 chr6 146975732 146975911 -35439331 - LTR50 LTR ERVL -582 213 17 367 233 107 27 chr6 146976696 146976846 -35438396 - L2 LINE L2 0 3313 3152 217 295 230 7 chr6 146977121 146977260 -35437982 - L2 LINE L2 -540 2774 2605 217 367 165 0 chr6 146977306 146977464 -35437778 - L2 LINE L2 -710 2604 2421 514 286 46 67 chr6 146978566 146978804 -35436438 + MIR SINE MIR 9 241 -21 202 290 151 11 chr6 146979630 146979723 -35435519 + L2 LINE L2 2715 2820 -494 582 211 171 7 chr6 146979790 146979942 -35435300 - MER5A DNA MER1_type 0 189 13 240 210 145 0 chr6 146979991 146980053 -35435189 - MLT1L LTR MaLR -80 535 465 1117 221 37 14 chr6 146980072 146980289 -35434953 + MER58A DNA MER1_type 1 222 -2 1310 231 88 19 chr6 146980746 146981109 -35434133 - MLT1B LTR MaLR -2 388 1 216 215 161 11 chr6 146981587 146981680 -35433562 - L3b LINE CR1 -195 1388 1282 2702 64 0 0 chr6 146981801 146982127 -35433115 - LTR17 LTR ERV1 -454 326 1 2399 59 0 0 chr6 146982131 146982419 -35432823 - HERV17 LTR ERV1 -4 8622 8335 286 77 0 0 chr6 146982409 146982448 -35432794 - HERV17 LTR ERV1 -1078 7548 7510 * 23388 51 3 10 chr6 146982441 146985195 -35430047 - HERV17 LTR ERV1 -2607 6019 3285 2857 16 0 0 chr6 146985195 146985506 -35429736 - AluYa5 SINE Alu 0 311 1 23388 51 3 10 chr6 146985506 146985576 -35429666 - HERV17 LTR ERV1 -5341 3285 3216 524 216 211 25 chr6 146986398 146986597 -35428645 + MIR SINE MIR 12 247 -15 448 357 7 0 chr6 146986935 146987075 -35428167 - L2 LINE L2 -3 3269 3129 240 317 10 19 chr6 146988006 146988110 -35427132 + MIR SINE MIR 50 152 -56 241 219 73 12 chr6 146988428 146988510 -35426732 + L2 LINE L2 3184 3270 -2 322 331 143 0 chr6 146988598 146988713 -35426529 - L2 LINE L2 -9 3263 3125 2209 177 24 47 chr6 146988713 146989137 -35426105 - MLT2D LTR ERVL 0 414 1 322 331 143 0 chr6 146989137 146989154 -35426088 - L2 LINE L2 -147 3125 3112 390 300 112 49 chr6 146989232 146989455 -35425787 - MIR SINE MIR -6 256 20 486 267 66 13 chr6 146990170 146990354 -35424888 - MIR SINE MIR -58 150 4 1862 150 31 3 chr6 146992245 146992531 -35422711 - AluSx SINE Alu -18 294 1 520 231 31 8 chr6 146992644 146992774 -35422468 - MIR SINE MIR -2 260 128 327 311 44 47 chr6 146993035 146993231 -35422011 - MIR SINE MIR -33 229 37 765 213 59 0 chr6 146993236 146993405 -35421837 + MER5A DNA MER1_type 1 179 -10 1770 164 4 4 chr6 146993785 146994091 -35421151 - AluJo SINE Alu 0 306 1 662 274 32 48 chr6 146994323 146994571 -35420671 + MIR SINE MIR 19 262 0 280 198 37 62 chr6 146994811 146994892 -35420350 - HsTC2 DNA Tc2 -20 1878 1800 180 286 152 9 chr6 146995241 146995353 -35419889 - L2 LINE L2 -19 3294 3167 211 328 45 0 chr6 146995447 146995514 -35419728 - L2 LINE L2 -218 3054 2985 315 49 0 0 chr6 146995708 146995749 -35419493 + (CA)n Simple_repeat Simple_repeat 2 42 0 212 0 36 0 chr6 146995805 146995833 -35419409 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2309 96 6 13 chr6 146995974 146996368 -35418874 + AluSx SINE Alu 1 392 0 2495 64 0 0 chr6 146996600 146996897 -35418345 - AluY SINE Alu -14 297 1 350 151 0 0 chr6 146998234 146998287 -35416955 + Alu SINE Alu 1 53 -248 292 328 66 16 chr6 146998856 146998978 -35416264 - L2 LINE L2 0 3272 3145 1578 120 85 0 chr6 146999959 147000218 -35415024 + L1MA8 LINE L1 6007 6287 -4 489 253 77 52 chr6 147001623 147001817 -35413425 - MIR SINE MIR -63 199 1 21 0 0 0 chr6 147001859 147001880 -35413362 + AT_rich Low_complexity Low_complexity 1 21 0 349 301 72 45 chr6 147002049 147002384 -35412858 + LTR33 LTR ERVL 3 346 -175 255 347 67 46 chr6 147002381 147002753 -35412489 - LTR16C LTR ERVL -14 477 98 * 357 264 62 49 chr6 147002860 147003004 -35412238 + LTR33 LTR ERVL 371 516 -5 2064 200 42 38 chr6 147003120 147003570 -35411672 + MLT1C LTR MaLR 7 458 -9 391 330 73 10 chr6 147004453 147004659 -35410583 + MIR SINE MIR 23 241 -21 882 165 27 69 chr6 147004806 147004994 -35410248 - AluJb SINE Alu -130 182 3 419 240 211 29 chr6 147005006 147005214 -35410028 - MIR SINE MIR -2 260 15 1950 105 61 31 chr6 147005268 147005562 -35409680 + AluSx SINE Alu 1 303 -9 849 129 0 0 chr6 147005568 147005684 -35409558 - FLAM_C SINE Alu -17 116 1 1073 263 80 16 chr6 147005831 147006196 -35409046 + L2 LINE L2 1811 2198 -1116 234 0 0 0 chr6 147006225 147006251 -35408991 + (A)n Simple_repeat Simple_repeat 1 26 0 1833 162 0 25 chr6 147006341 147006655 -35408587 + AluJb SINE Alu 1 306 -6 354 232 71 0 chr6 147007068 147007167 -35408075 - MLT1C LTR MaLR -361 106 1 216 0 0 0 chr6 147007283 147007307 -35407935 + (CA)n Simple_repeat Simple_repeat 1 24 0 481 219 138 44 chr6 147007307 147007467 -35407775 + MER112 DNA MER1_type 86 260 0 25 31 0 0 chr6 147008834 147008866 -35406376 + AT_rich Low_complexity Low_complexity 1 32 0 245 292 148 50 chr6 147009840 147010042 -35405200 - MLT1J LTR MaLR -19 492 271 2445 66 0 10 chr6 147010094 147010395 -35404847 + AluY SINE Alu 1 298 -13 23 0 0 0 chr6 147010692 147010715 -35404527 + AT_rich Low_complexity Low_complexity 1 23 0 1744 198 144 46 chr6 147010719 147011178 -35404064 + MLT1D LTR MaLR 2 505 0 389 215 57 95 chr6 147011301 147011459 -35403783 - MIR SINE MIR -1 261 110 300 196 0 0 chr6 147011958 147012009 -35403233 + Tigger6a DNA MER2_type 4 54 -1029 863 163 6 52 chr6 147013617 147013789 -35401453 + AluJo SINE Alu 126 289 -23 189 0 0 0 chr6 147013795 147013816 -35401426 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 431 181 0 86 chr6 147014169 147014274 -35400968 - FLAM_A SINE Alu -3 139 44 330 270 0 0 chr6 147014282 147014371 -35400871 - L1MA9 LINE L1 -38 6274 6186 409 312 35 17 chr6 147014530 147014703 -35400539 - MIR SINE MIR -30 232 57 270 312 64 6 chr6 147015509 147015666 -35399576 + L1ME LINE L1 5726 5891 -230 344 263 180 55 chr6 147017822 147018040 -35397202 + MIR SINE MIR 11 260 -2 253 364 33 53 chr6 147018017 147018168 -35397074 - L2 LINE L2 -7 3306 3159 * 202 208 21 21 chr6 147018168 147018216 -35397026 + GA-rich Low_complexity Low_complexity 2 49 0 1303 278 79 55 chr6 147018329 147019098 -35396144 - L2 LINE L2 -264 3049 2265 2062 116 3 10 chr6 147019115 147019408 -35395834 + AluSc SINE Alu 19 309 0 1106 149 11 0 chr6 147019742 147019916 -35395326 - AluJo SINE Alu -3 309 134 2365 182 14 27 chr6 147020659 147021104 -35394138 + MER82 DNA MER2_type 1 439 -214 1905 221 25 3 chr6 147021814 147022180 -35393062 - MLT1A2 LTR MaLR 0 374 1 1920 137 0 13 chr6 147022731 147023063 -35392179 - AluJo SINE Alu 0 312 1 180 371 52 0 chr6 147023780 147023877 -35391365 - MER5A DNA MER1_type -81 108 7 1603 167 4 4 chr6 147025022 147025279 -35389963 + AluJb SINE Alu 1 257 -55 975 117 0 0 chr6 147025327 147025455 -35389787 - AluJo SINE Alu -174 128 1 1280 220 167 14 chr6 147025560 147025996 -35389246 - MLT1D LTR MaLR -2 503 1 209 237 34 17 chr6 147027418 147027477 -35387765 - MIR SINE MIR -122 140 81 22 80 0 0 chr6 147028421 147028471 -35386771 + AT_rich Low_complexity Low_complexity 1 50 0 245 220 17 110 chr6 147028587 147028635 -35386607 + MIR SINE MIR 106 157 -105 2073 134 0 0 chr6 147028635 147028950 -35386292 + AluSx SINE Alu 1 315 0 245 220 17 110 chr6 147028950 147029018 -35386224 + MIR SINE MIR 157 212 -50 332 307 0 0 chr6 147029380 147029455 -35385787 + MIR SINE MIR 27 101 -161 447 345 91 0 chr6 147029628 147029793 -35385449 - MER91B DNA MER1_type -10 180 1 189 302 31 83 chr6 147029793 147029889 -35385353 + MIR3 SINE MIR 111 201 -7 750 213 80 125 chr6 147030280 147030680 -35384562 + MER34C LTR ERV1 188 569 -16 298 248 59 30 chr6 147031562 147031697 -35383545 - MIR SINE MIR -63 145 19 181 184 61 0 chr6 147032045 147032094 -35383148 - L2 LINE L2 -10 3262 3211 873 244 103 0 chr6 147032533 147032767 -35382475 + MIR SINE MIR 5 262 0 1149 180 86 110 chr6 147033133 147033516 -35381726 - MLT1A2 LTR MaLR 0 374 1 288 0 0 0 chr6 147034328 147034360 -35380882 + (TG)n Simple_repeat Simple_repeat 2 33 0 897 189 223 45 chr6 147036043 147036402 -35378840 - LTR37A LTR ERV1 0 426 4 890 161 8 0 chr6 147036469 147036599 -35378643 + FLAM_A SINE Alu 1 131 -2 2014 89 0 4 chr6 147036640 147036898 -35378344 + AluSc SINE Alu 50 306 -3 264 100 0 0 chr6 147037337 147037377 -35377865 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 2022 140 0 16 chr6 147037483 147037790 -35377452 - AluSx SINE Alu -10 302 1 185 271 0 34 chr6 147037910 147037969 -35377273 + MIR SINE MIR 130 186 -76 2111 110 3 19 chr6 147038451 147038760 -35376482 - AluSx SINE Alu -8 304 1 429 293 73 24 chr6 147038925 147039089 -35376153 + L3 LINE CR1 1306 1477 -100 1815 145 35 0 chr6 147039303 147039592 -35375650 + AluJb SINE Alu 1 299 -13 2140 126 0 7 chr6 147041000 147041309 -35373933 - AluSx SINE Alu -5 307 1 666 224 20 27 chr6 147041402 147041549 -35373693 - MER45A DNA AcHobo -23 155 10 269 341 0 0 chr6 147041919 147042004 -35373238 - L2 LINE L2 0 3272 3188 1543 215 102 48 chr6 147042466 147042908 -35372334 + MER31B LTR ERV1 1 466 0 802 268 36 5 chr6 147043936 147044156 -35371086 + MER102b DNA MER1_type 92 318 -23 1846 129 50 0 chr6 147044337 147044615 -35370627 + AluSx SINE Alu 1 292 -20 2357 104 0 0 chr6 147044618 147044917 -35370325 + AluSx SINE Alu 1 299 -13 1005 133 138 0 chr6 147044946 147045127 -35370115 + AluJo SINE Alu 84 289 -23 2304 209 39 110 chr6 147045644 147046517 -35368725 + L1ME1 LINE L1 1841 2585 -3630 2332 113 0 0 chr6 147046517 147046827 -35368415 + AluSg SINE Alu 1 310 0 2304 209 39 110 chr6 147046827 147047212 -35368030 + L1ME1 LINE L1 2585 2996 -3219 4143 167 48 136 chr6 147047224 147048007 -35367235 + Tigger6a DNA MER2_type 8 655 -942 1033 131 6 0 chr6 147048007 147048167 -35367075 - L1MB3 LINE L1 -2 6181 6021 4143 167 48 136 chr6 147048167 147048561 -35366681 + Tigger6a DNA MER2_type 655 1082 -1 466 250 91 43 chr6 147048569 147048653 -35366589 + L1ME1 LINE L1 3025 3104 -3111 2119 68 0 11 chr6 147048653 147048918 -35366324 + AluY SINE Alu 29 290 -21 466 250 91 43 chr6 147048918 147049065 -35366177 + L1ME1 LINE L1 3104 3267 -2948 * 1759 237 41 42 chr6 147049059 147049257 -35365985 + L1ME1 LINE L1 5679 5876 -359 2252 90 23 0 chr6 147049257 147049556 -35365686 + AluY SINE Alu 1 306 -5 1759 237 41 42 chr6 147049556 147049898 -35365344 + L1ME1 LINE L1 5876 6218 -17 225 0 0 0 chr6 147050040 147050065 -35365177 + (TG)n Simple_repeat Simple_repeat 1 25 0 551 291 6 6 chr6 147050514 147050679 -35364563 + L3 LINE CR1 842 1006 -571 6052 50 0 4 chr6 147050707 147051921 -35363321 + L1PA5 LINE L1 4766 5974 -180 465 19 0 0 chr6 147052621 147052675 -35362567 + (CA)n Simple_repeat Simple_repeat 1 54 0 2073 145 3 6 chr6 147055024 147055335 -35359907 - AluSx SINE Alu -2 310 1 2176 110 0 0 chr6 147055415 147055764 -35359478 - AluSg SINE Alu 0 349 1 496 240 24 40 chr6 147056930 147056965 -35358277 + MER82 DNA MER2_type 11 45 -608 3517 140 36 7 chr6 147056965 147057514 -35357728 + MER34B LTR ERV1 1 565 0 496 240 24 40 chr6 147057514 147057603 -35357639 + MER82 DNA MER2_type 45 133 -520 3176 141 30 32 chr6 147057608 147058167 -35357075 - L1MC1 LINE L1 0 6333 5776 1430 228 42 42 chr6 147058168 147058314 -35356928 + MLT1B LTR MaLR 2 147 -243 2075 125 0 13 chr6 147058314 147058619 -35356623 - AluSx SINE Alu -11 301 1 1430 228 42 42 chr6 147058619 147058853 -35356389 + MLT1B LTR MaLR 146 382 -8 2209 123 27 3 chr6 147058861 147059193 -35356049 - L1MC1 LINE L1 -561 5772 5433 373 172 0 0 chr6 147059194 147059276 -35355966 - AluSp/q SINE Alu 0 313 232 2213 117 3 0 chr6 147059382 147059673 -35355569 - AluSx SINE Alu -20 292 1 907 167 20 37 chr6 147059675 147059846 -35355396 - L1MC1 LINE L1 -743 5403 5269 2639 116 83 5 chr6 147059846 147060243 -35354999 - MSTA LTR MaLR 0 428 1 907 167 20 37 chr6 147060243 147060329 -35354913 - L1MC1 LINE L1 -877 5269 5183 2327 200 60 16 chr6 147060346 147060494 -35354748 + MER82 DNA MER2_type 132 272 -381 1127 203 53 120 chr6 147060494 147060912 -35354330 - MLT1B LTR MaLR 0 390 1 2327 200 60 16 chr6 147060912 147061263 -35353979 + MER82 DNA MER2_type 272 653 0 276 278 21 10 chr6 147062590 147062687 -35352555 + LTR33 LTR ERVL 44 141 -380 524 297 87 29 chr6 147062737 147063013 -35352229 + LTR33 LTR ERVL 227 518 -3 190 289 69 63 chr6 147063099 147063258 -35351984 - MER5A DNA MER1_type -26 163 4 848 197 202 37 chr6 147063704 147064126 -35351116 - MLT1E3 LTR MaLR -78 546 2 476 164 90 74 chr6 147064151 147064273 -35350969 - MIR SINE MIR -2 260 137 198 0 0 0 chr6 147064273 147064295 -35350947 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2306 89 3 10 chr6 147064304 147064618 -35350624 - AluSq SINE Alu -1 312 1 954 198 154 17 chr6 147064655 147064948 -35350294 + MER67C LTR ERV1 3 335 -375 938 157 28 83 chr6 147064952 147065051 -35350191 + MER67C LTR ERV1 507 610 -100 1933 153 16 10 chr6 147065051 147065359 -35349883 - AluSx SINE Alu -2 310 1 938 157 28 83 chr6 147065359 147065441 -35349801 + MER67C LTR ERV1 610 677 -33 2396 123 19 27 chr6 147065441 147065808 -35349434 + THE1B LTR MaLR 1 364 0 938 157 28 83 chr6 147065808 147065841 -35349401 + MER67C LTR ERV1 677 710 0 359 234 27 72 chr6 147065841 147065952 -35349290 - MIR SINE MIR -143 119 14 677 228 54 43 chr6 147066074 147066258 -35348984 - MER20 DNA MER1_type -30 189 4 180 0 0 0 chr6 147066270 147066290 -35348952 + (CA)n Simple_repeat Simple_repeat 2 21 0 420 20 0 0 chr6 147068127 147068176 -35347066 + (CA)n Simple_repeat Simple_repeat 2 50 0 994 192 0 82 chr6 147068794 147069013 -35346229 + MER3 DNA MER1_type 9 209 0 2618 135 37 2 chr6 147069016 147069423 -35345819 + MSTA LTR MaLR 3 423 -5 1553 86 27 18 chr6 147071936 147072341 -35342901 + AluSg/x SINE Alu 84 310 0 215 143 41 20 chr6 147072674 147072723 -35342519 - MIR SINE MIR -98 164 115 1038 200 0 54 chr6 147074317 147074557 -35340685 - AluJo SINE Alu -1 311 85 8014 32 1 0 chr6 147075908 147077305 -35337937 - L1PA4 LINE L1 0 6155 4754 2582 43 3 0 chr6 147077396 147077700 -35337542 + AluY SINE Alu 1 305 -6 397 290 111 48 chr6 147078376 147078628 -35336614 - L2 LINE L2 -5 3308 3041 791 230 44 5 chr6 147078763 147078967 -35336275 - MIR SINE MIR -10 252 41 212 382 22 29 chr6 147078968 147079104 -35336138 - L2 LINE L2 -377 2937 2803 2224 113 7 0 chr6 147079940 147080249 -35334993 - AluSq SINE Alu -2 311 1 447 254 82 68 chr6 147080730 147080950 -35334292 - L2 LINE L2 -10 3303 3081 2327 72 0 31 chr6 147081132 147081453 -35333789 + AluY SINE Alu 1 311 0 269 169 17 0 chr6 147082575 147082634 -35332608 + (CA)n Simple_repeat Simple_repeat 1 60 0 744 289 93 48 chr6 147082898 147083337 -35331905 + L1ME4a LINE L1 5296 5754 -367 216 214 0 0 chr6 147083345 147083387 -35331855 - L2 LINE L2 -16 3297 3256 282 335 187 62 chr6 147083812 147084006 -35331236 + L2 LINE L2 2959 3194 -78 1912 139 24 14 chr6 147084006 147084300 -35330942 + AluSx SINE Alu 5 301 -11 282 335 187 62 chr6 147084300 147084362 -35330880 + L2 LINE L2 3194 3247 -25 2183 107 0 10 chr6 147084664 147084978 -35330264 + AluSx SINE Alu 1 312 0 394 283 103 28 chr6 147085084 147085374 -35329868 + L1ME4a LINE L1 5798 6109 -12 270 0 0 0 chr6 147086919 147086949 -35328293 + (T)n Simple_repeat Simple_repeat 1 30 0 494 233 33 8 chr6 147087274 147087394 -35327848 + MIR SINE MIR 2 124 -138 2333 67 0 0 chr6 147088109 147088425 -35326817 + AluY SINE Alu 1 316 0 188 131 49 16 chr6 147088797 147088858 -35326384 + (TA)n Simple_repeat Simple_repeat 2 64 0 222 37 0 0 chr6 147089078 147089105 -35326137 + (T)n Simple_repeat Simple_repeat 1 27 0 2564 138 50 59 chr6 147089105 147089319 -35325923 - L1MC3 LINE L1 0 7785 7570 2233 123 0 0 chr6 147089319 147089621 -35325621 - AluSx SINE Alu -10 302 1 2564 138 50 59 chr6 147089621 147089929 -35325313 - L1MC3 LINE L1 -215 7570 7268 1118 137 44 6 chr6 147089973 147090155 -35325087 + MER5A DNA MER1_type 1 189 0 289 277 262 0 chr6 147090226 147090367 -35324875 - MER5B DNA MER1_type 0 178 1 232 332 81 42 chr6 147090667 147090977 -35324265 - L3 LINE CR1 -25 1552 1231 438 287 26 0 chr6 147090979 147091094 -35324148 + MER5B DNA MER1_type 1 118 -60 312 342 26 13 chr6 147092002 147092154 -35323088 + L2 LINE L2 1130 1283 -2031 365 296 82 0 chr6 147092206 147092341 -35322901 + MIR SINE MIR 117 262 0 21 0 0 0 chr6 147092997 147093018 -35322224 + AT_rich Low_complexity Low_complexity 1 21 0 381 218 35 56 chr6 147093072 147093232 -35322010 - MIR SINE MIR -63 145 10 237 260 103 103 chr6 147093259 147093463 -35321779 - MIR SINE MIR -12 250 47 336 252 99 38 chr6 147094786 147094917 -35320325 - L2 LINE L2 -9 3304 3166 2341 157 24 43 chr6 147095509 147095833 -35319409 - MSTB2 LTR MaLR 0 457 143 2606 110 8 55 chr6 147095833 147096172 -35319070 + THE1B LTR MaLR 1 322 -42 2292 118 0 3 chr6 147096172 147096486 -35318756 - AluSp SINE Alu 0 313 1 2606 110 8 55 chr6 147096486 147096528 -35318714 + THE1B LTR MaLR 322 364 0 2341 157 24 43 chr6 147096528 147096669 -35318573 - MSTB2 LTR MaLR -314 143 1 303 28 0 0 chr6 147096696 147096732 -35318510 + (CA)n Simple_repeat Simple_repeat 2 37 0 593 104 0 10 chr6 147096913 147097009 -35318233 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 301 241 51 0 chr6 147097009 147097088 -35318154 - L2 LINE L2 -1812 1502 1420 182 262 106 85 chr6 147097126 147097267 -35317975 - MER5A DNA MER1_type -6 183 40 * 225 248 97 83 chr6 147097150 147097295 -35317947 + MER5A DNA MER1_type 43 189 0 223 277 116 45 chr6 147097898 147098053 -35317189 - L2 LINE L2 -1 3312 3147 21 0 0 0 chr6 147098417 147098438 -35316804 + AT_rich Low_complexity Low_complexity 1 21 0 14845 192 24 15 chr6 147099345 147104836 -35310406 - L1PB1 LINE L1 0 6867 1341 482 309 199 30 chr6 147105368 147105976 -35309266 - L2 LINE L2 -798 2516 1806 356 310 181 26 chr6 147106032 147106374 -35308868 - L2 LINE L2 0 3313 2919 4172 55 7 2 chr6 147106501 147107374 -35307868 + LTR5 LTR ERVK 1 969 0 319 325 67 97 chr6 147107444 147107878 -35307364 - L2 LINE L2 -17 3255 2835 224 266 64 9 chr6 147108167 147108276 -35306966 - L2 LINE L2 -817 2497 2383 353 357 87 24 chr6 147108952 147109417 -35305825 + L2 LINE L2 2778 3268 -45 26 50 0 0 chr6 147110306 147110346 -35304896 + AT_rich Low_complexity Low_complexity 1 40 0 1994 109 3 40 chr6 147110346 147110649 -35304593 - AluSx SINE Alu -20 292 1 186 71 0 0 chr6 147111485 147111513 -35303729 + (A)n Simple_repeat Simple_repeat 1 28 0 509 294 86 61 chr6 147112273 147112518 -35302724 + MIR SINE MIR 8 258 -4 339 282 155 35 chr6 147112862 147113036 -35302206 - MIR SINE MIR -34 228 34 1341 172 57 0 chr6 147113198 147113442 -35301800 + MER58B DNA MER1_type 56 313 -28 200 299 0 0 chr6 147113460 147113527 -35301715 + MER5A DNA MER1_type 4 70 -119 261 278 53 98 chr6 147113986 147114119 -35301123 - L2 LINE L2 0 3272 3146 285 332 224 0 chr6 147115140 147115336 -35299906 + MIR SINE MIR 8 247 -15 294 230 170 10 chr6 147115875 147115975 -35299267 - MIR SINE MIR -13 249 134 382 275 58 89 chr6 147116004 147116380 -35298862 + L1MC4a LINE L1 4458 4844 -1341 2048 133 7 0 chr6 147116380 147116682 -35298560 + AluSx SINE Alu 1 304 -8 382 275 58 89 chr6 147116682 147117259 -35297983 + L1MC4a LINE L1 4844 5373 -812 1850 172 0 3 chr6 147117262 147117558 -35297684 + AluJo SINE Alu 1 295 -17 533 214 97 19 chr6 147117572 147117726 -35297516 + L1MC4a LINE L1 5698 5863 -1945 207 285 50 21 chr6 147117752 147117862 -35297380 - MIR SINE MIR -76 132 19 2477 122 11 22 chr6 147118181 147118549 -35296693 + THE1B LTR MaLR 1 364 0 497 173 25 0 chr6 147119075 147119156 -35296086 - AluS SINE Alu -229 84 2 2293 110 3 0 chr6 147119176 147119486 -35295756 - AluSq SINE Alu -2 311 1 231 36 0 0 chr6 147119612 147119640 -35295602 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 294 242 92 42 chr6 147119692 147119812 -35295430 + MIR SINE MIR 7 133 -75 999 196 80 5 chr6 147120245 147120469 -35294773 - MIR SINE MIR 0 262 22 310 276 19 29 chr6 147120528 147120633 -35294609 - MIR3 SINE MIR 0 208 105 1552 184 53 0 chr6 147120753 147121036 -35294206 + AluJo SINE Alu 1 298 -14 22 0 0 0 chr6 147121979 147122001 -35293241 + AT_rich Low_complexity Low_complexity 1 22 0 5327 122 55 20 chr6 147122086 147122949 -35292293 + MER4D LTR ERV1 3 895 -8 204 97 0 0 chr6 147122949 147122980 -35292262 + (T)n Simple_repeat Simple_repeat 1 31 0 23 78 0 0 chr6 147123356 147123407 -35291835 + AT_rich Low_complexity Low_complexity 1 51 0 594 267 182 45 chr6 147123521 147123873 -35291369 - L2 LINE L2 -1 3312 2913 860 48 0 0 chr6 147124211 147124314 -35290928 + L1PA5 LINE L1 6051 6153 -1 778 179 0 22 chr6 147125931 147126065 -35289177 - FLAM_A SINE Alu 0 142 12 2669 33 0 3 chr6 147126085 147126392 -35288850 + AluY SINE Alu 1 306 -5 223 60 40 60 chr6 147129074 147129124 -35286118 + (CGGGG)n Simple_repeat Simple_repeat 5 53 0 210 336 106 0 chr6 147131145 147131258 -35283984 + MIR SINE MIR 26 150 -58 642 89 0 0 chr6 147131356 147131446 -35283796 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 807 153 23 8 chr6 147132332 147132463 -35282779 - AluJb SINE Alu -179 133 1 504 281 41 29 chr6 147136498 147136669 -35278573 - MIR3 SINE MIR -9 199 27 27 29 0 0 chr6 147138286 147138320 -35276922 + AT_rich Low_complexity Low_complexity 1 34 0 806 193 60 0 chr6 147138488 147138638 -35276604 - AluJb SINE Alu -17 295 137 668 255 47 42 chr6 147138673 147138885 -35276357 - MIR SINE MIR -38 224 12 21 0 0 0 chr6 147145321 147145342 -35269900 + AT_rich Low_complexity Low_complexity 1 21 0 219 254 28 14 chr6 147145637 147145708 -35269534 + GA-rich Low_complexity Low_complexity 2 73 0 246 258 62 52 chr6 147145858 147145955 -35269287 - MER5A DNA MER1_type -85 104 7 691 249 54 30 chr6 147145965 147146298 -35268944 - L1MC5 LINE L1 -24 7937 7597 956 219 10 56 chr6 147146358 147146635 -35268607 + L1ME LINE L1 5576 5822 -348 408 162 206 0 chr6 147146637 147146705 -35268537 + FRAM SINE Alu 18 99 -77 189 0 0 0 chr6 147146710 147146731 -35268511 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 7334 57 7 0 chr6 147146753 147147421 -35267821 - L1PA7 LINE L1 -4 6150 5488 2203 114 0 13 chr6 147147421 147147727 -35267515 - AluSg SINE Alu -7 303 2 7334 57 7 0 chr6 147147727 147148576 -35266666 - L1PA7 LINE L1 -666 5488 4637 1766 65 21 0 chr6 147148593 147148918 -35266324 - L1P3 LINE L1 -683 5489 5160 25775 132 11 78 chr6 147148922 147153483 -35261759 - L1P3 LINE L1 -1511 4635 426 243 0 0 0 chr6 147153483 147153510 -35261732 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 25775 132 11 78 chr6 147153510 147153900 -35261342 - L1P3 LINE L1 -5720 426 12 1854 164 4 0 chr6 147153910 147154190 -35261052 - AluSx SINE Alu -31 281 1 358 188 23 62 chr6 147154215 147154343 -35260899 - L1MC5 LINE L1 -476 7485 7363 1988 108 4 0 chr6 147155054 147155313 -35259929 - AluSx SINE Alu -52 260 1 282 262 19 10 chr6 147155556 147155659 -35259583 + Charlie7 DNA MER1_type 57 160 -2452 1573 226 127 36 chr6 147155740 147156411 -35258831 + Charlie7 DNA MER1_type 1874 2605 -7 1599 147 15 12 chr6 147156430 147156689 -35258553 + AluSx SINE Alu 42 301 -11 686 176 10 40 chr6 147156825 147157043 -35258199 - Charlie1 DNA MER1_type -14 2747 132 400 355 0 8 chr6 147157136 147157260 -35257982 + MIR SINE MIR 20 142 -120 344 292 99 25 chr6 147157346 147157507 -35257735 - MER5B DNA MER1_type -4 174 2 201 308 83 25 chr6 147158362 147158482 -35256760 + L3b LINE CR1 1268 1394 -189 2109 117 13 0 chr6 147158490 147158788 -35256454 + AluSq SINE Alu 1 302 -11 535 302 142 10 chr6 147159557 147159872 -35255370 - L1ME3 LINE L1 -211 5951 5594 346 276 182 41 chr6 147159913 147160253 -35254989 - L1ME3 LINE L1 -816 5330 4943 305 229 127 30 chr6 147160584 147160750 -35254492 - MIR SINE MIR -2 260 79 1850 140 49 36 chr6 147160785 147161093 -35254149 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 147161230 147161251 -35253991 + AT_rich Low_complexity Low_complexity 1 21 0 427 308 0 8 chr6 147161320 147161450 -35253792 + MIR3 SINE MIR 49 177 -31 1640 127 12 0 chr6 147162357 147162609 -35252633 + AluSq SINE Alu 56 310 -3 2541 58 0 0 chr6 147163166 147163461 -35251781 - AluSp SINE Alu -18 295 1 258 32 0 0 chr6 147163464 147163495 -35251747 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr6 147163958 147163988 -35251254 + AT_rich Low_complexity Low_complexity 1 30 0 201 364 16 16 chr6 147164048 147164177 -35251065 + L2 LINE L2 2576 2704 -610 183 368 84 26 chr6 147164448 147164603 -35250639 + L2 LINE L2 2930 3093 -179 246 262 233 0 chr6 147165216 147165319 -35249923 - L2 LINE L2 -9 3263 3137 1888 151 3 0 chr6 147165328 147165619 -35249623 + AluSx SINE Alu 1 292 -20 843 184 46 6 chr6 147166152 147166326 -35248916 + L1MA4 LINE L1 6116 6296 -4 1811 144 87 4 chr6 147166435 147166712 -35248530 - AluSx SINE Alu -12 300 1 203 222 111 0 chr6 147167446 147167500 -35247742 + L2 LINE L2 3244 3303 -10 22 0 0 0 chr6 147167944 147167966 -35247276 + AT_rich Low_complexity Low_complexity 1 22 0 414 205 79 120 chr6 147168015 147168332 -35246910 + L1ME4a LINE L1 5808 6111 -10 320 340 0 0 chr6 147168386 147168486 -35246756 + L1 LINE L1 3607 3706 -2440 225 262 16 0 chr6 147168649 147168710 -35246532 + L1 LINE L1 4764 4825 -1321 * 260 223 91 14 chr6 147168705 147168795 -35246447 - L1M3 LINE L1 -842 5462 5373 253 335 38 16 chr6 147168837 147169022 -35246220 + L1 LINE L1 4882 5070 -1076 624 183 95 22 chr6 147169808 147169842 -35245400 - AluJb SINE Alu -164 148 118 239 0 32 0 chr6 147169842 147169873 -35245369 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 624 183 95 22 chr6 147169873 147169975 -35245267 - AluJb SINE Alu -194 118 2 21 0 0 0 chr6 147170758 147170779 -35244463 + AT_rich Low_complexity Low_complexity 1 21 0 232 186 209 0 chr6 147171872 147171958 -35243284 - L1ME4a LINE L1 -4 6117 6014 437 256 96 18 chr6 147172106 147172325 -35242917 - L1ME4a LINE L1 -177 5944 5709 322 172 0 0 chr6 147172408 147172466 -35242776 - L1ME4a LINE L1 -537 5584 5527 243 61 0 0 chr6 147172488 147172521 -35242721 + (TC)n Simple_repeat Simple_repeat 2 34 0 315 0 0 0 chr6 147172521 147172556 -35242686 + (CA)n Simple_repeat Simple_repeat 1 35 0 364 317 25 8 chr6 147173122 147173242 -35242000 - MER5B DNA MER1_type -3 175 54 209 313 35 17 chr6 147173570 147173685 -35241557 + GA-rich Low_complexity Low_complexity 3 119 0 291 286 159 25 chr6 147174407 147174652 -35240590 - MLT1L LTR MaLR -182 433 156 1649 174 24 24 chr6 147175151 147175449 -35239793 - AluJo SINE Alu -14 298 1 5728 163 50 8 chr6 147176845 147178530 -35236712 - L1PA16 LINE L1 -1 6165 4379 243 0 0 0 chr6 147178530 147178557 -35236685 + (TG)n Simple_repeat Simple_repeat 2 28 0 5728 163 50 8 chr6 147178557 147178824 -35236418 - L1PA16 LINE L1 -1787 4379 4125 2014 152 0 3 chr6 147179296 147179599 -35235643 - AluSx SINE Alu -10 302 1 234 252 120 102 chr6 147179703 147179735 -35235507 + MLT1L LTR MaLR 209 239 -272 3004 88 8 3 chr6 147179735 147180108 -35235134 - THE1C LTR MaLR 0 375 1 234 252 120 102 chr6 147180108 147180343 -35234899 + MLT1L LTR MaLR 239 417 -94 253 308 60 71 chr6 147180649 147180831 -35234411 + MIR SINE MIR 9 188 -74 1921 146 29 0 chr6 147180844 147181125 -35234117 + AluSx SINE Alu 1 289 -23 1269 209 52 10 chr6 147181168 147181551 -35233691 + L1M4 LINE L1 4943 5341 -805 360 0 0 0 chr6 147181706 147181746 -35233496 + (TG)n Simple_repeat Simple_repeat 2 41 0 257 216 39 20 chr6 147182226 147182328 -35232914 + (TAA)n Simple_repeat Simple_repeat 3 106 0 332 247 0 0 chr6 147182348 147182429 -35232813 - MIR SINE MIR -64 198 118 1074 281 132 47 chr6 147182442 147183584 -35231658 - L2 LINE L2 0 3313 2068 325 267 147 0 chr6 147183870 147183986 -35231256 - L2 LINE L2 0 3313 3181 363 269 34 8 chr6 147185396 147185515 -35229727 + MER5A DNA MER1_type 1 122 -67 973 219 43 73 chr6 147185576 147185850 -35229392 + MER46C DNA MER2_type 8 272 -66 2235 94 0 10 chr6 147185850 147186148 -35229094 - AluY SINE Alu -16 295 1 973 219 43 73 chr6 147186148 147186202 -35229040 + MER46C DNA MER2_type 272 326 -12 1430 155 229 6 chr6 147186975 147187311 -35227931 + MLT1C LTR MaLR 5 415 -52 21 36 0 0 chr6 147187634 147187662 -35227580 + AT_rich Low_complexity Low_complexity 1 28 0 486 330 25 25 chr6 147187945 147188142 -35227100 - MIR SINE MIR -12 250 54 874 294 62 12 chr6 147188641 147189046 -35226196 + MLT1J LTR MaLR 85 509 -2 2093 90 79 10 chr6 147190055 147190345 -35224897 + AluY SINE Alu 1 310 -1 482 294 16 16 chr6 147190349 147190655 -35224587 + L1MA9 LINE L1 2977 3282 -4283 516 267 0 0 chr6 147190658 147190789 -35224453 - L1M4c LINE L1 -4568 1816 1686 12754 182 45 25 chr6 147190799 147194466 -35220776 + L1MA9 LINE L1 3313 7055 -676 2089 149 67 5 chr6 147194570 147194973 -35220269 + L1MA9 LINE L1 7304 7731 0 882 133 0 22 chr6 147195386 147195521 -35219721 + FLAM_C SINE Alu 9 140 -3 263 258 0 10 chr6 147197241 147197350 -35217892 + L1P LINE L1 5281 5388 -763 * 292 289 53 46 chr6 147197347 147197499 -35217743 + L1ME LINE L1 5420 5572 -549 843 292 68 35 chr6 147197564 147197930 -35217312 - L2 LINE L2 0 3313 2936 601 236 95 17 chr6 147198651 147198925 -35216317 - L1ME3 LINE L1 -29 6133 5825 2305 97 0 3 chr6 147198926 147199226 -35216016 + AluSg SINE Alu 1 299 -11 869 144 103 7 chr6 147199227 147199373 -35215869 + AluSg/x SINE Alu 135 294 -15 653 247 24 0 chr6 147199374 147199544 -35215698 - L1ME3 LINE L1 -330 5832 5659 763 269 77 5 chr6 147199556 147199764 -35215478 - MER58A DNA MER1_type -1 223 1 416 172 141 4 chr6 147199825 147199952 -35215290 - L1ME3 LINE L1 -523 5647 5494 212 276 0 0 chr6 147200086 147200144 -35215098 + (TA)n Simple_repeat Simple_repeat 2 59 0 516 280 65 61 chr6 147200151 147200547 -35214695 - L1MEc LINE L1 -4999 1236 861 1338 206 16 52 chr6 147200575 147200881 -35214361 - AluJb SINE Alu -12 300 6 748 128 0 0 chr6 147200974 147201083 -35214159 - HY1 scRNA scRNA -3 109 1 1322 281 53 52 chr6 147201088 147201878 -35213364 - L1MEc LINE L1 -5514 882 92 321 284 82 39 chr6 147201987 147202195 -35213047 - L2 LINE L2 -1 3312 3096 1206 231 144 48 chr6 147202579 147203059 -35212183 + MER34B LTR ERV1 1 526 -39 1731 176 10 10 chr6 147203072 147203362 -35211880 + AluJb SINE Alu 7 296 -16 259 340 241 0 chr6 147203409 147203650 -35211592 + L2 LINE L2 2196 2494 -820 828 124 13 59 chr6 147203681 147203834 -35211408 - AluSp/q SINE Alu -7 306 161 209 200 0 40 chr6 147204084 147204098 -35211144 + MIR SINE MIR 107 120 -142 2185 117 0 0 chr6 147204098 147204388 -35210854 - AluSc SINE Alu -3 306 17 209 200 0 40 chr6 147204388 147204423 -35210819 + MIR SINE MIR 120 154 -108 350 274 77 36 chr6 147204608 147204776 -35210466 + L1ME4a LINE L1 5946 6120 -1 257 207 18 144 chr6 147207862 147207973 -35207269 + MIR3 SINE MIR 95 191 -17 319 244 83 78 chr6 147208140 147208333 -35206909 + MIR SINE MIR 63 256 -6 1015 215 13 21 chr6 147208524 147208761 -35206481 - MER96B DNA MER1_type? -182 235 1 217 243 52 23 chr6 147209813 147209921 -35205321 - MIR3 SINE MIR -94 114 9 203 138 0 0 chr6 147210308 147210337 -35204905 + (CAT)n Simple_repeat Simple_repeat 1 29 0 293 258 175 0 chr6 147210795 147210892 -35204350 - L2 LINE L2 -12 3301 3188 549 190 133 6 chr6 147210935 147211093 -35204149 + MER5B DNA MER1_type 1 178 0 289 333 15 68 chr6 147211178 147211310 -35203932 - MIR SINE MIR -69 139 14 335 312 155 44 chr6 147211391 147211843 -35203399 + L2 LINE L2 586 1087 -2227 492 314 163 12 chr6 147211868 147212199 -35203043 + L2 LINE L2 2933 3313 0 191 271 100 29 chr6 147212206 147212276 -35202966 - MIR SINE MIR -155 107 33 274 229 83 64 chr6 147213196 147213305 -35201937 - MER5B DNA MER1_type -59 119 9 483 308 6 33 chr6 147213394 147213576 -35201666 + Zaphod DNA AcHobo 40 216 -3815 21 36 0 0 chr6 147213906 147213934 -35201308 + AT_rich Low_complexity Low_complexity 1 28 0 571 113 28 0 chr6 147214428 147214534 -35200708 + GA-rich Low_complexity Low_complexity 4 112 0 970 166 4 72 chr6 147214782 147215017 -35200225 + MER20 DNA MER1_type 1 219 0 5082 149 24 3 chr6 147215157 147216041 -35199201 - L1MC2 LINE L1 -8 6336 5435 2229 92 0 3 chr6 147266304 147266765 -35148477 - AluSc SINE Alu 0 460 1 21 0 0 0 chr6 147266830 147266851 -35148391 + AT_rich Low_complexity Low_complexity 1 21 0 232 302 0 0 chr6 147267495 147267558 -35147684 - L3 LINE CR1 -23 1554 1492 1060 167 57 24 chr6 147270286 147270496 -35144746 + MER20 DNA MER1_type 1 217 -2 401 238 9 19 chr6 147270770 147270875 -35144367 + L2 LINE L2 3210 3313 0 1149 214 0 24 chr6 147270934 147271186 -35144056 - MIR SINE MIR 0 262 17 1977 94 8 8 chr6 147271753 147272018 -35143224 + AluSc SINE Alu 17 281 -28 360 0 0 0 chr6 147272018 147272058 -35143184 + (CA)n Simple_repeat Simple_repeat 2 41 0 202 232 36 0 chr6 147272477 147272533 -35142709 + L2 LINE L2 3025 3082 -190 503 69 14 0 chr6 147273085 147273157 -35142085 + (TA)n Simple_repeat Simple_repeat 2 74 0 541 324 71 0 chr6 147274470 147274695 -35140547 - MIR SINE MIR -18 244 4 1819 180 0 0 chr6 147275669 147275958 -35139284 + AluJb SINE Alu 1 289 -23 2269 112 0 3 chr6 147275963 147276266 -35138976 + AluSx SINE Alu 1 302 -10 315 323 6 48 chr6 147276365 147276467 -35138775 - MER5B DNA MER1_type -18 160 66 2352 75 0 35 chr6 147276467 147276786 -35138456 - AluY SINE Alu -1 310 3 315 323 6 48 chr6 147276786 147276850 -35138392 - MER5B DNA MER1_type -112 66 1 1982 165 0 3 chr6 147277427 147277736 -35137506 - AluSx SINE Alu -4 308 1 7221 180 22 30 chr6 147278626 147279709 -35135533 - L1MB2 LINE L1 -2 6169 5079 1492 93 5 0 chr6 147279709 147279923 -35135319 + L1PA13 LINE L1 5941 6155 -8 7221 180 22 30 chr6 147279923 147280464 -35134778 - L1MB2 LINE L1 -1092 5079 4535 2424 94 0 3 chr6 147280464 147280772 -35134470 - AluY SINE Alu -4 307 1 7221 180 22 30 chr6 147280772 147281558 -35133684 - L1MB2 LINE L1 -1636 4535 3781 2011 129 3 29 chr6 147281811 147282122 -35133120 + AluSg1 SINE Alu 5 307 -2 201 306 46 28 chr6 147282321 147282429 -35132813 - MIR SINE MIR -61 147 38 1101 308 143 26 chr6 147282570 147283376 -35131866 + L2 LINE L2 2003 2713 -600 2247 127 48 20 chr6 147283376 147283730 -35131512 - THE1B LTR MaLR 0 364 1 11984 92 7 2 chr6 147283730 147285302 -35129940 - THE1B-int LTR MaLR 0 1580 1 2275 124 48 20 chr6 147285302 147285656 -35129586 - THE1B LTR MaLR 0 364 1 1101 308 143 26 chr6 147285656 147286000 -35129242 + L2 LINE L2 2712 3295 -18 336 111 0 0 chr6 147286117 147286171 -35129071 + (TC)n Simple_repeat Simple_repeat 1 54 0 211 207 37 37 chr6 147286407 147286489 -35128753 + (TA)n Simple_repeat Simple_repeat 1 82 0 5716 18 3 0 chr6 147286600 147287260 -35127982 - L1PA3 LINE L1 0 6155 5494 11173 59 3 5 chr6 147287260 147288775 -35126467 - L1P LINE L1 -4029 2117 606 628 335 62 17 chr6 147288882 147289395 -35125847 + HAL1 LINE L1 299 906 -1601 17784 145 31 11 chr6 147289449 147295333 -35119909 + L1PB1 LINE L1 1 6036 -831 2425 51 0 32 chr6 147295333 147295644 -35119598 - AluY SINE Alu -10 301 1 17784 145 31 11 chr6 147295644 147296482 -35118760 + L1PB1 LINE L1 6036 6856 -11 213 156 62 0 chr6 147296590 147296654 -35118588 + (TTAA)n Simple_repeat Simple_repeat 4 71 0 6973 107 13 115 chr6 147296697 147296833 -35118409 + HSMAR2 DNA Mariner 15 163 -1139 2300 123 0 3 chr6 147296833 147297142 -35118100 + AluSg SINE Alu 1 308 -2 6973 107 13 115 chr6 147297142 147298388 -35116854 + HSMAR2 DNA Mariner 163 1247 -55 2033 110 6 54 chr6 147298388 147298705 -35116537 - AluSg SINE Alu -8 302 1 6973 107 13 115 chr6 147298705 147298755 -35116487 + HSMAR2 DNA Mariner 1247 1301 -1 578 284 88 25 chr6 147298757 147298860 -35116382 + HAL1 LINE L1 1078 1173 -1334 1967 175 3 0 chr6 147298860 147299169 -35116073 + AluSx SINE Alu 1 310 -2 578 284 88 25 chr6 147299169 147299587 -35115655 + HAL1 LINE L1 1173 1632 -875 1145 203 93 102 chr6 147299621 147300084 -35115158 - MLT1C LTR MaLR 0 467 9 620 297 38 0 chr6 147300093 147300305 -35114937 + HAL1 LINE L1 1663 1882 -625 679 220 12 0 chr6 147300359 147300532 -35114710 + GA-rich Low_complexity Low_complexity 2 176 0 2431 70 3 10 chr6 147300532 147300845 -35114397 + AluY SINE Alu 1 311 0 896 249 45 109 chr6 147300881 147301548 -35113694 + HAL1 LINE L1 1874 2497 -10 270 109 0 0 chr6 147302215 147302261 -35112981 - Alu SINE Alu 0 300 255 676 325 27 3 chr6 147302278 147302779 -35112463 - L1ME LINE L1 -391 5771 5255 186 43 0 0 chr6 147302785 147302808 -35112434 + (CA)n Simple_repeat Simple_repeat 2 24 0 14614 134 24 9 chr6 147302809 147305191 -35110051 + Tigger1 DNA MER2_type 2 2418 0 1011 161 0 0 chr6 147305205 147305385 -35109857 + (TA)n Simple_repeat Simple_repeat 1 180 0 338 276 46 0 chr6 147305385 147305472 -35109770 - L1MC4 LINE L1 -1340 6702 6612 313 346 148 0 chr6 147305617 147305779 -35109463 - MIR SINE MIR -21 241 56 225 0 0 0 chr6 147306180 147306205 -35109037 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 734 274 18 47 chr6 147306854 147307108 -35108134 + MIR SINE MIR 9 251 -11 318 50 0 0 chr6 147307191 147307231 -35108011 + (TG)n Simple_repeat Simple_repeat 2 41 0 663 67 0 0 chr6 147307691 147307780 -35107462 + L1MA4 LINE L1 6157 6245 -55 424 140 65 0 chr6 147307781 147307874 -35107368 + L1MA6 LINE L1 6200 6298 -2 2072 164 0 0 chr6 147308545 147308857 -35106385 + AluJo SINE Alu 1 312 0 372 279 244 5 chr6 147308924 147309125 -35106117 - MIR SINE MIR -13 249 1 343 119 0 131 chr6 147309606 147309690 -35105552 - MLT2B1 LTR ERVL 0 520 443 49 71 0 0 chr6 147309705 147309803 -35105439 + AT_rich Low_complexity Low_complexity 1 98 0 1267 202 89 50 chr6 147309803 147310204 -35105038 - MLT2B1 LTR ERVL -34 380 8 122 53 0 13 chr6 147310372 147310597 -35104645 + AT_rich Low_complexity Low_complexity 1 222 0 1921 126 62 32 chr6 147310616 147310957 -35104285 + THE1B LTR MaLR 14 364 0 11969 89 2 11 chr6 147310957 147311716 -35103526 + THE1B-int LTR MaLR 1 765 -815 2291 114 3 0 chr6 147311716 147312022 -35103220 + AluSx SINE Alu 1 307 -5 11969 89 2 11 chr6 147312022 147312856 -35102386 + THE1B-int LTR MaLR 765 1580 0 2088 117 43 57 chr6 147312856 147313014 -35102228 + THE1B LTR MaLR 1 160 -204 2133 121 7 10 chr6 147313014 147313312 -35101930 - AluSq SINE Alu -16 297 1 2088 117 43 57 chr6 147313312 147313522 -35101720 + THE1B LTR MaLR 160 364 0 19363 185 21 19 chr6 147313527 147317936 -35097306 + L1P3 LINE L1 815 5240 -1221 900 145 0 0 chr6 147317936 147318060 -35097182 + AluSg/x SINE Alu 164 290 -20 4093 87 19 3 chr6 147318060 147318633 -35096609 + L1PA11 LINE L1 5593 6174 0 49 60 0 0 chr6 147318667 147318751 -35096491 + AT_rich Low_complexity Low_complexity 1 84 0 662 99 27 9 chr6 147318752 147318863 -35096379 - L1MB4 LINE L1 -3 6177 6065 211 200 0 0 chr6 147318995 147319035 -35096207 + (TG)n Simple_repeat Simple_repeat 1 40 0 2319 92 0 0 chr6 147319159 147319453 -35095789 - AluSg SINE Alu -16 294 1 647 291 112 42 chr6 147319547 147319904 -35095338 + LTR16C LTR ERVL 96 477 -14 367 352 14 14 chr6 147320218 147320437 -35094805 + ERVL LTR ERVL 362 580 -4416 260 274 14 0 chr6 147320850 147320923 -35094319 + ERVL LTR ERVL 4317 4390 -1374 1592 203 111 24 chr6 147320954 147321413 -35093829 + MER34 LTR ERV1 18 516 -26 499 265 25 36 chr6 147321705 147321901 -35093341 + ERVL LTR ERVL 4875 5068 -696 418 324 74 64 chr6 147322175 147322346 -35092896 + LTR16C LTR ERVL 52 220 -271 2230 126 0 0 chr6 147322346 147322647 -35092595 + AluSx SINE Alu 1 301 -11 418 324 74 64 chr6 147322647 147322880 -35092362 + LTR16C LTR ERVL 220 460 -31 417 280 114 8 chr6 147323048 147323180 -35092062 + MIR SINE MIR 9 154 -108 1034 173 6 28 chr6 147323182 147323381 -35091861 + AluJb SINE Alu 115 309 0 24 32 0 0 chr6 147325926 147325957 -35089285 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 147326087 147326120 -35089122 + AT_rich Low_complexity Low_complexity 1 33 0 349 287 167 0 chr6 147326125 147326275 -35088967 - MIR3 SINE MIR -9 199 25 208 244 0 0 chr6 147329750 147329791 -35085451 + (CATA)n Simple_repeat Simple_repeat 3 43 0 23 0 0 0 chr6 147330830 147330853 -35084389 + AT_rich Low_complexity Low_complexity 1 23 0 3192 123 32 20 chr6 147331180 147331742 -35083500 - L1MB4 LINE L1 0 6180 5612 2228 126 3 0 chr6 147331785 147332087 -35083155 - AluSx SINE Alu -9 303 1 188 194 0 0 chr6 147334478 147334514 -35080728 - MIR SINE MIR -59 203 168 22 0 0 0 chr6 147334525 147334547 -35080695 + AT_rich Low_complexity Low_complexity 1 22 0 637 105 57 0 chr6 147334547 147334652 -35080590 - L1PB3 LINE L1 0 6154 6044 457 352 35 0 chr6 147334652 147334797 -35080445 - MIR SINE MIR -81 181 32 2074 144 25 5 chr6 147334812 147335207 -35080035 - L1MB7 LINE L1 -23 6161 5759 404 292 99 41 chr6 147336135 147336306 -35078936 + MER5A DNA MER1_type 8 188 -1 303 71 0 0 chr6 147337609 147337651 -35077591 + (TG)n Simple_repeat Simple_repeat 1 42 0 2075 108 14 3 chr6 147338157 147338444 -35076798 + AluSx SINE Alu 1 290 -22 188 329 37 0 chr6 147339539 147339621 -35075621 + L3 LINE CR1 1481 1565 -12 2498 48 0 0 chr6 147339884 147340175 -35075067 + AluY SINE Alu 1 291 -20 2279 97 0 7 chr6 147340219 147340518 -35074724 - AluSx SINE Alu -15 297 1 1172 90 119 11 chr6 147340601 147340778 -35074464 - Charlie3 DNA MER1_type -8 2702 2507 186 43 0 0 chr6 147344162 147344185 -35071057 + (CGG)n Simple_repeat Simple_repeat 2 24 0 228 122 0 0 chr6 147344415 147344456 -35070786 + (CGGAG)n Simple_repeat Simple_repeat 5 45 0 27 62 0 0 chr6 147344589 147344637 -35070605 + GC_rich Low_complexity Low_complexity 1 48 0 361 323 47 47 chr6 147344939 147345171 -35070071 + L2 LINE L2 3036 3267 -5 650 289 85 0 chr6 147346247 147346448 -35068794 + MIR SINE MIR 24 241 -21 321 276 31 0 chr6 147346727 147346825 -35068417 - L1ME3 LINE L1 0 6162 6062 37 0 0 0 chr6 147346891 147346928 -35068314 + AT_rich Low_complexity Low_complexity 1 37 0 632 253 31 0 chr6 147347004 147347166 -35068076 - MIR SINE MIR -82 180 14 284 326 72 17 chr6 147347769 147347950 -35067292 + L2 LINE L2 3118 3308 -5 672 309 93 10 chr6 147348161 147348452 -35066790 - L3 LINE CR1 -351 1226 912 1609 177 43 7 chr6 147349492 147349791 -35065451 + AluJb SINE Alu 1 310 -2 2265 115 0 0 chr6 147350440 147350736 -35064506 + AluSx SINE Alu 1 296 -16 817 228 72 17 chr6 147350736 147350837 -35064405 + MER63A DNA MER1_type 20 114 -1574 391 146 0 101 chr6 147350837 147350926 -35064316 + MADE1 DNA Mariner 1 80 0 817 228 72 17 chr6 147350926 147351004 -35064238 + MER63A DNA MER1_type 114 209 -1 215 320 31 31 chr6 147351153 147351250 -35063992 + L2 LINE L2 1859 1955 -1359 520 266 31 47 chr6 147351317 147351509 -35063733 - MER90 LTR ERV1 -17 558 370 722 231 61 26 chr6 147351522 147351751 -35063491 - MER90 LTR ERV1 -336 239 3 443 335 90 69 chr6 147351761 147352929 -35062313 + L2 LINE L2 2063 3270 -2 1709 141 30 39 chr6 147353248 147353553 -35061689 - AluJb SINE Alu -10 302 1 285 247 89 32 chr6 147353750 147353880 -35061362 - MIR SINE MIR -28 234 97 698 291 66 12 chr6 147354159 147354403 -35060839 - MIR SINE MIR 0 262 6 687 283 72 13 chr6 147354419 147354656 -35060586 - MIR SINE MIR 0 262 12 1695 98 16 127 chr6 147355392 147355707 -35059535 + AluSx SINE Alu 28 307 -5 5998 103 37 8 chr6 147355791 147356317 -35058925 - L1PA13 LINE L1 0 6163 5601 2475 101 48 22 chr6 147356317 147356672 -35058570 + THE1B LTR MaLR 1 364 0 5998 103 37 8 chr6 147356672 147357060 -35058182 - L1PA13 LINE L1 -562 5601 5226 836 184 38 6 chr6 147358056 147358214 -35057028 + MLT1A1 LTR MaLR 1 163 -202 432 327 36 0 chr6 147358387 147358555 -35056687 - MIR SINE MIR -2 260 87 396 323 83 8 chr6 147359418 147359551 -35055691 + MIR3 SINE MIR 20 162 -46 1043 174 11 5 chr6 147359786 147359970 -35055272 - MER115 DNA AcHobo 0 693 509 732 97 0 0 chr6 147359984 147360087 -35055155 - L1 LINE L1 -883 5263 5161 410 85 63 2 chr6 147360085 147360156 -35055086 + L1P LINE L1 3622 3695 -2451 * 534 262 47 23 chr6 147360167 147360536 -35054706 - MER115 DNA AcHobo -268 425 17 297 255 56 31 chr6 147360875 147361036 -35054206 + L1ME4a LINE L1 5945 6109 -12 6301 100 0 0 chr6 147361041 147361995 -35053247 - L1PA14 LINE L1 -17 6144 5160 8287 164 7 0 chr6 147361995 147363412 -35051830 + L1P LINE L1 3625 5051 -1095 205 253 48 36 chr6 147364591 147364674 -35050568 - MER5A DNA MER1_type -25 164 81 362 253 0 13 chr6 147364919 147364998 -35050244 + MER81 DNA DNA 5 82 -32 1876 185 62 32 chr6 147365147 147365585 -35049657 - MLT1C LTR MaLR 0 467 17 393 156 26 13 chr6 147366017 147366094 -35049148 + MSTB LTR MaLR 1 78 -348 7206 143 19 3 chr6 147366094 147367213 -35048029 + L1M1 LINE L1 34 1170 -6395 2580 139 0 0 chr6 147367212 147367599 -35047643 - MSTA-int LTR MaLR -1264 387 1 * 2917 127 24 0 chr6 147367599 147368017 -35047225 - MSTA LTR MaLR 0 428 1 9577 164 23 15 chr6 147368017 147368501 -35046741 - L1 LINE L1 -2050 5515 5036 2449 91 0 0 chr6 147368501 147368809 -35046433 - AluSx SINE Alu -4 308 1 9577 164 23 15 chr6 147368809 147370777 -35044465 - L1 LINE L1 -2529 5036 3040 6217 143 27 18 chr6 147370779 147372173 -35043069 + L1MA3 LINE L1 4724 6136 -169 2414 81 0 7 chr6 147372173 147372480 -35042762 + AluY SINE Alu 7 311 0 6217 143 27 18 chr6 147372480 147372628 -35042614 + L1MA3 LINE L1 6136 6281 -24 2345 148 34 7 chr6 147372628 147373036 -35042206 + MSTB LTR MaLR 18 426 0 310 246 0 0 chr6 147373070 147373135 -35042107 - MIR SINE MIR -48 214 150 273 285 85 46 chr6 147374406 147374536 -35040706 + MIR3 SINE MIR 10 144 -64 2494 77 0 0 chr6 147374557 147374855 -35040387 - AluSc SINE Alu -11 298 1 472 286 106 33 chr6 147375417 147375690 -35039552 - L2 LINE L2 0 3313 3021 296 331 41 18 chr6 147375742 147375911 -35039331 - L2 LINE L2 -411 2903 2731 256 293 60 17 chr6 147376139 147376255 -35038987 + L3 LINE CR1 573 693 -884 3550 165 44 2 chr6 147376368 147377100 -35038142 + L1ME1 LINE L1 5180 5945 -233 994 128 14 0 chr6 147377109 147377250 -35037992 - MLT2B2 LTR ERVL -355 160 18 441 211 11 11 chr6 147377250 147377345 -35037897 + L1M4 LINE L1 4831 4925 -1221 662 230 76 29 chr6 147377351 147377525 -35037717 + L1ME1 LINE L1 5992 6176 -2 578 328 113 62 chr6 147377526 147378207 -35037035 + L3 LINE CR1 839 1554 -23 2364 108 0 0 chr6 147378261 147378566 -35036676 + AluSx SINE Alu 3 307 -5 577 270 87 36 chr6 147378639 147378995 -35036247 - L1ME4a LINE L1 -4 6117 5744 735 279 116 84 chr6 147379167 147380015 -35035227 - L2 LINE L2 -107 3206 2342 1736 167 21 7 chr6 147380757 147381045 -35034197 + AluJo SINE Alu 13 304 -8 22 35 0 0 chr6 147381479 147381508 -35033734 + AT_rich Low_complexity Low_complexity 1 29 0 2250 111 50 36 chr6 147381798 147382157 -35033085 + THE1B LTR MaLR 1 364 0 341 301 78 19 chr6 147383218 147383321 -35031921 - L2 LINE L2 0 3272 3164 225 204 20 0 chr6 147383434 147383483 -35031759 + GA-rich Low_complexity Low_complexity 1 50 0 335 338 72 14 chr6 147383498 147383705 -35031537 - L2 LINE L2 -1159 2155 1937 195 366 30 22 chr6 147383797 147383931 -35031311 + L2 LINE L2 2956 3090 -182 2158 111 10 3 chr6 147384331 147384628 -35030614 + AluSx SINE Alu 1 299 -13 1142 140 0 0 chr6 147384628 147384799 -35030443 + AluSg/x SINE Alu 134 304 -8 306 0 0 0 chr6 147384958 147384992 -35030250 + (TG)n Simple_repeat Simple_repeat 1 34 0 1598 147 3 39 chr6 147384992 147385277 -35029965 - AluJo SINE Alu -33 279 5 1151 273 75 45 chr6 147385334 147385630 -35029612 - L1ME3A LINE L1 -219 5951 5665 2414 104 0 0 chr6 147385630 147385939 -35029303 - AluSc SINE Alu 0 309 1 1151 273 75 45 chr6 147385939 147386269 -35028973 - L1ME3A LINE L1 -505 5665 5306 592 240 142 65 chr6 147386270 147386657 -35028585 - L1ME3A LINE L1 -1631 4515 4099 180 111 0 0 chr6 147386803 147386830 -35028412 + (GAA)n Simple_repeat Simple_repeat 1 27 0 312 27 0 0 chr6 147387489 147387526 -35027716 + (CA)n Simple_repeat Simple_repeat 2 38 0 257 305 84 35 chr6 147387694 147387920 -35027322 + L1MC/D LINE L1 5367 5603 -518 456 200 70 9 chr6 147388027 147388142 -35027100 - HsTC2 DNA Tc2 -3 1895 1774 9795 137 52 22 chr6 147388151 147389393 -35025849 - L1MA5 LINE L1 -6 6294 5090 284 83 0 0 chr6 147389393 147389429 -35025813 + U2 snRNA snRNA 1 36 -152 9795 137 52 22 chr6 147389429 147390744 -35024498 - L1MA5 LINE L1 -1210 5090 3637 467 293 86 5 chr6 147390749 147390947 -35024295 + L1MC/D LINE L1 5607 5820 -1988 212 162 0 0 chr6 147391026 147391063 -35024179 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 249 284 68 40 chr6 147391329 147391505 -35023737 - L1ME LINE L1 -5887 183 3 317 207 124 66 chr6 147392529 147392650 -35022592 - MER112 DNA MER1_type -8 252 125 333 223 15 115 chr6 147395245 147395375 -35019867 - MER112 DNA MER1_type -137 123 7 201 271 0 14 chr6 147395713 147395783 -35019459 + (TA)n Simple_repeat Simple_repeat 1 69 0 2277 96 3 13 chr6 147395890 147396204 -35019038 - AluSx SINE Alu 0 312 2 827 178 0 0 chr6 147396264 147396393 -35018849 - FLAM_C SINE Alu -12 131 3 621 290 115 38 chr6 147396399 147396851 -35018391 - L1ME4a LINE L1 -296 5825 5339 350 316 92 22 chr6 147397096 147397368 -35017874 - L1ME4a LINE L1 -925 5221 4931 380 301 155 29 chr6 147397686 147398164 -35017078 + L2 LINE L2 2168 2705 -609 377 264 104 109 chr6 147398579 147398954 -35016288 + L1M2 LINE L1 736 1108 -5741 24 0 0 0 chr6 147398954 147398978 -35016264 + GC_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr6 147399020 147399059 -35016183 + GC_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr6 147399258 147399289 -35015953 + GC_rich Low_complexity Low_complexity 1 31 0 185 308 26 39 chr6 147401415 147401493 -35013749 + L2 LINE L2 2898 2974 -339 449 226 58 15 chr6 147403308 147403445 -35011797 - L1ME4a LINE L1 -1 6120 5978 1021 341 91 30 chr6 147403975 147405006 -35010236 + L2 LINE L2 1763 2856 -458 206 347 0 0 chr6 147405055 147405127 -35010115 + L2 LINE L2 2857 2928 -344 * 638 274 128 51 chr6 147405124 147405749 -35009493 - L2 LINE L2 -1 3312 2555 220 284 37 62 chr6 147405942 147406023 -35009219 + L2 LINE L2 3193 3271 -42 383 272 25 96 chr6 147406063 147406302 -35008940 - MIR SINE MIR -36 226 3 2173 141 77 21 chr6 147407860 147408235 -35007007 - MSTD LTR MaLR 0 396 1 759 234 115 45 chr6 147408659 147409046 -35006196 - L1ME4a LINE L1 -35 6086 5675 792 305 30 0 chr6 147409272 147409534 -35005708 + Charlie2 DNA MER1_type 13 282 -2500 2009 216 184 28 chr6 147409580 147410439 -35004803 + Charlie2 DNA MER1_type 1861 2853 -9 540 106 0 24 chr6 147410594 147410679 -35004563 - L1 LINE L1 -3682 2464 2382 342 0 0 0 chr6 147411536 147411574 -35003668 + (A)n Simple_repeat Simple_repeat 1 38 0 5350 192 42 23 chr6 147412777 147413248 -35001994 - L1 LINE L1 -3464 3384 2923 2344 94 0 3 chr6 147413248 147413547 -35001695 - AluSg SINE Alu -12 298 1 5350 192 42 23 chr6 147413547 147414124 -35001118 - L1 LINE L1 -3925 2923 2358 1861 163 3 0 chr6 147414124 147414333 -35000909 - AluJb SINE Alu 0 332 120 258 32 0 0 chr6 147414333 147414364 -35000878 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1861 163 3 0 chr6 147414364 147414485 -35000757 - AluJb SINE Alu -212 120 1 5350 192 42 23 chr6 147414485 147415235 -35000007 - L1 LINE L1 -4490 2358 1546 206 284 172 26 chr6 147415487 147415603 -34999639 + L2 LINE L2 2967 3099 -173 1835 164 7 16 chr6 147416864 147417169 -34998073 - AluJo SINE Alu 0 312 11 2007 141 7 13 chr6 147418503 147418808 -34996434 - AluSx SINE Alu -9 303 1 199 377 113 9 chr6 147420681 147420787 -34994455 - L2 LINE L2 -46 3226 3110 828 133 123 20 chr6 147421108 147421311 -34993931 - Charlie1 DNA MER1_type 0 2761 2538 304 292 91 26 chr6 147422268 147422422 -34992820 + MLT1L LTR MaLR 352 515 -100 511 333 94 4 chr6 147422910 147423144 -34992098 - MIR SINE MIR 0 262 8 272 267 52 35 chr6 147423316 147423432 -34991810 - MLT1J LTR MaLR -8 503 386 253 326 31 39 chr6 147423416 147423545 -34991697 - MLT1L LTR MaLR -173 442 315 * 2470 90 3 0 chr6 147423969 147424281 -34990961 - AluSp SINE Alu 0 313 1 327 333 52 7 chr6 147426403 147426538 -34988704 - MIR SINE MIR -93 169 29 377 222 90 28 chr6 147426589 147426733 -34988509 - L1ME4a LINE L1 -191 5930 5778 1856 161 6 19 chr6 147426864 147427180 -34988062 + AluJb SINE Alu 1 312 0 291 303 148 0 chr6 147428021 147428176 -34987066 + MIR SINE MIR 53 230 -32 486 249 85 18 chr6 147428291 147428456 -34986786 + MIR SINE MIR 75 250 -12 429 321 188 40 chr6 147428497 147428849 -34986393 + L2 LINE L2 2004 2407 -907 237 217 0 0 chr6 147429036 147429082 -34986160 - MIR SINE MIR -1 261 216 678 267 69 101 chr6 147429155 147429273 -34985969 + MER115 DNA AcHobo 111 231 -462 2141 107 10 3 chr6 147429273 147429563 -34985679 + AluSq SINE Alu 1 292 -21 678 267 69 101 chr6 147429563 147429762 -34985480 + MER115 DNA AcHobo 231 418 -275 358 300 80 7 chr6 147429826 147429976 -34985266 - MIR SINE MIR -70 192 32 537 338 100 32 chr6 147430006 147430617 -34984625 + L2 LINE L2 2667 3310 -3 2359 81 20 0 chr6 147431058 147431353 -34983889 + AluSx SINE Alu 1 301 -11 2406 99 0 3 chr6 147432057 147432369 -34982873 - AluSx SINE Alu 0 312 2 345 285 108 42 chr6 147432373 147432706 -34982536 - L1ME4a LINE L1 -2 6119 5765 393 315 14 0 chr6 147432714 147432857 -34982385 - L1ME4a LINE L1 -401 5720 5576 228 67 0 0 chr6 147433061 147433091 -34982151 + (A)n Simple_repeat Simple_repeat 1 30 0 213 282 43 26 chr6 147433244 147433284 -34981958 + MIR SINE MIR 110 148 -114 7442 122 62 9 chr6 147433284 147433889 -34981353 - Tigger3b DNA MER2_type -1797 1231 660 2443 84 3 0 chr6 147433889 147434199 -34981043 - AluSp SINE Alu -2 311 1 7442 122 62 9 chr6 147434199 147434762 -34980480 - Tigger3b DNA MER2_type -2368 660 1 213 282 43 26 chr6 147434762 147434838 -34980404 + MIR SINE MIR 148 228 -34 280 248 83 25 chr6 147434912 147435033 -34980209 - L1ME4a LINE L1 -1 6120 5993 423 145 40 0 chr6 147435224 147435300 -34979942 + MER116 DNA Mariner 2 80 0 284 206 103 15 chr6 147435328 147435396 -34979846 + L2 LINE L2 3197 3270 -43 802 142 0 0 chr6 147436029 147436142 -34979100 + AluJb SINE Alu 6 118 -194 306 298 24 0 chr6 147436166 147436250 -34978992 + MIR SINE MIR 41 126 -136 4108 191 1 0 chr6 147436541 147437305 -34977937 - L1PB1 LINE L1 -1592 4554 3790 * 6158 147 7 2 chr6 147437302 147438883 -34976359 + L1PB1 LINE L1 4552 6137 -14 363 105 0 0 chr6 147439932 147439989 -34975253 + (CA)n Simple_repeat Simple_repeat 2 58 0 222 37 0 0 chr6 147440217 147440244 -34974998 + (TG)n Simple_repeat Simple_repeat 2 28 0 425 285 134 17 chr6 147440319 147440491 -34974751 + MIR SINE MIR 20 211 -51 289 180 110 60 chr6 147440527 147440627 -34974615 + L2 LINE L2 3207 3311 -2 2097 121 3 7 chr6 147440709 147441007 -34974235 - AluSc SINE Alu -12 297 1 2400 84 7 3 chr6 147441123 147441431 -34973811 + AluSq SINE Alu 1 309 -4 1049 244 14 0 chr6 147441499 147441712 -34973530 + MER58A DNA MER1_type 9 224 0 265 341 85 12 chr6 147441724 147441912 -34973330 - MIR3 SINE MIR -54 154 7 769 278 269 29 chr6 147445541 147446196 -34969046 + L3 LINE CR1 708 1519 -58 2269 92 3 0 chr6 147446520 147446813 -34968429 - AluSg SINE Alu -16 294 1 203 314 0 0 chr6 147447917 147447968 -34967274 + MIR SINE MIR 91 141 -67 1005 275 8 0 chr6 147448042 147448278 -34966964 + MIR SINE MIR 15 252 -10 225 305 12 12 chr6 147448311 147448393 -34966849 + MER5A DNA MER1_type 93 174 -15 199 304 0 0 chr6 147448405 147448461 -34966781 + MIR3 SINE MIR 151 206 -2 797 156 73 0 chr6 147449133 147449312 -34965930 - L1MA8 LINE L1 -3 6288 6097 1484 159 17 48 chr6 147449324 147449450 -34965792 + AluJb SINE Alu 13 141 -171 5404 42 24 13 chr6 147449450 147450085 -34965157 + L1PA6 LINE L1 5508 6149 -5 2395 67 0 0 chr6 147450090 147450373 -34964869 + AluY SINE Alu 18 300 -11 1484 159 17 48 chr6 147450373 147450530 -34964712 + AluJb SINE Alu 145 293 -19 308 208 0 52 chr6 147450530 147450607 -34964635 - L1MA6 LINE L1 -192 6108 6036 * 1009 176 19 0 chr6 147450605 147450795 -34964447 + L1MA6 LINE L1 5848 6053 -250 210 254 164 15 chr6 147452583 147452650 -34962592 - MIR SINE MIR -168 94 18 423 0 0 0 chr6 147452908 147452955 -34962287 + (TG)n Simple_repeat Simple_repeat 1 47 0 204 40 0 0 chr6 147452954 147452979 -34962263 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 2130 97 23 16 chr6 147453031 147453340 -34961902 - AluSp SINE Alu -2 311 1 415 220 33 22 chr6 147454399 147454490 -34960752 - L2 LINE L2 -2 3311 3220 238 188 0 0 chr6 147454552 147454600 -34960642 + Tigger7 DNA MER2_type 1 48 -291 452 129 331 8 chr6 147455311 147455435 -34959807 + MIR SINE MIR 5 168 -94 204 40 0 0 chr6 147456855 147456880 -34958362 + (TG)n Simple_repeat Simple_repeat 2 26 0 1398 184 77 33 chr6 147457070 147457369 -34957873 - AluJb SINE Alu 0 312 1 24 53 0 0 chr6 147457468 147457506 -34957736 + AT_rich Low_complexity Low_complexity 1 38 0 455 249 155 89 chr6 147458047 147458408 -34956834 - MLT1H LTR MaLR -90 459 75 27 29 0 0 chr6 147458713 147458747 -34956495 + AT_rich Low_complexity Low_complexity 1 34 0 1666 95 40 5 chr6 147459222 147459444 -34955798 + MER30 DNA MER1_type 1 230 0 1050 173 8 107 chr6 147459499 147459742 -34955500 + MER20 DNA MER1_type 1 219 0 1144 153 25 25 chr6 147459785 147459981 -34955261 - L1PB3 LINE L1 0 6154 5959 357 358 40 0 chr6 147460938 147461089 -34954153 + L2 LINE L2 3116 3272 0 192 77 0 0 chr6 147461804 147461830 -34953412 + (TG)n Simple_repeat Simple_repeat 2 27 0 288 285 204 18 chr6 147464785 147465006 -34950236 - L2 LINE L2 -101 3212 2951 2210 115 0 32 chr6 147465239 147465553 -34949689 - AluSx SINE Alu -8 304 1 468 299 169 0 chr6 147466335 147466512 -34948730 + MIR SINE MIR 22 228 -34 469 283 78 45 chr6 147468434 147468678 -34946564 + MIR SINE MIR 8 259 -3 1756 88 22 0 chr6 147469291 147469517 -34945725 + AluSp SINE Alu 1 231 -82 205 301 118 32 chr6 147469799 147469892 -34945350 - MIR SINE MIR 0 262 162 252 324 0 0 chr6 147470314 147470382 -34944860 - MER5B DNA MER1_type -35 143 76 2177 92 0 7 chr6 147470461 147470743 -34944499 - AluSg SINE Alu -30 280 1 257 0 30 0 chr6 147471542 147471575 -34943667 + (TG)n Simple_repeat Simple_repeat 2 35 0 1392 153 75 26 chr6 147473567 147473835 -34941407 - AluJb SINE Alu -31 281 1 2361 108 0 6 chr6 147476432 147476746 -34938496 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 147476773 147476794 -34938448 + AT_rich Low_complexity Low_complexity 1 21 0 431 293 22 66 chr6 147476856 147477037 -34938205 - MIR3 SINE MIR -14 194 22 3895 132 25 56 chr6 147478009 147478727 -34936515 + LTR34 LTR ERV1 4 699 0 209 281 18 0 chr6 147480758 147480815 -34934427 + GA-rich Low_complexity Low_complexity 2 59 0 222 266 230 9 chr6 147481464 147481577 -34933665 - MIR SINE MIR -50 212 75 2254 113 3 3 chr6 147482086 147482395 -34932847 + AluSx SINE Alu 1 309 -3 1046 213 17 75 chr6 147483724 147484072 -34931170 + L1MA9 LINE L1 5955 6282 -30 453 220 83 0 chr6 147484397 147484506 -34930736 - MER94 DNA DNA -16 118 1 297 299 11 0 chr6 147484693 147484780 -34930462 + MIR SINE MIR 42 129 -133 1270 263 83 35 chr6 147484907 147485447 -34929795 - MER90 LTR ERV1 -4 571 6 1679 75 5 5 chr6 147485675 147485888 -34929354 + AluSq SINE Alu 67 279 -34 194 0 0 37 chr6 147485888 147485915 -34929327 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1601 117 9 4 chr6 147486386 147486617 -34928625 - AluSg/x SINE Alu 0 312 81 572 160 32 0 chr6 147486619 147486713 -34928529 + AluSp SINE Alu 11 107 -206 279 297 224 5 chr6 147488542 147488734 -34926508 + L2 LINE L2 2658 2891 -423 436 189 194 26 chr6 147490160 147490387 -34924855 + L1MC3 LINE L1 7521 7785 0 1828 168 14 77 chr6 147490403 147490819 -34924423 - MLT1B LTR MaLR 0 390 1 1890 154 3 10 chr6 147491201 147491500 -34923742 + AluSx SINE Alu 1 297 -15 236 28 0 28 chr6 147491503 147491522 -34923720 + (TAA)n Simple_repeat Simple_repeat 2 21 -15 1986 87 75 0 chr6 147491522 147491787 -34923455 + AluSg SINE Alu 1 285 -25 236 28 0 28 chr6 147491787 147491803 -34923439 + (TAA)n Simple_repeat Simple_repeat 21 36 0 21 36 0 0 chr6 147493798 147493826 -34921416 + AT_rich Low_complexity Low_complexity 1 28 0 1837 143 40 0 chr6 147493845 147494140 -34921102 - AluJo SINE Alu 0 306 1 285 256 44 22 chr6 147494809 147494899 -34920343 + MIR SINE MIR 46 137 -125 327 293 0 2 chr6 147495433 147495550 -34919692 - MIR SINE MIR -63 145 40 1927 116 0 8 chr6 147496734 147496992 -34918250 + AluSx SINE Alu 39 294 -18 207 139 0 0 chr6 147497175 147497211 -34918031 + (GA)n Simple_repeat Simple_repeat 2 37 0 999 286 83 29 chr6 147497539 147498306 -34916936 + L1M4 LINE L1 2922 3730 -2416 2386 89 7 7 chr6 147499254 147499558 -34915684 - AluSx SINE Alu -8 304 1 2570 74 0 0 chr6 147501959 147502269 -34912973 - AluY SINE Alu -1 310 1 210 139 0 0 chr6 147502685 147502721 -34912521 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 306 207 0 0 chr6 147502859 147502917 -34912325 - AluJo SINE Alu -1 301 244 401 150 62 25 chr6 147502917 147502997 -34912245 - AluJo SINE Alu -123 189 107 1726 186 16 0 chr6 147503000 147503307 -34911935 + AluJo SINE Alu 1 312 0 357 132 54 39 chr6 147503327 147503456 -34911786 + GA-rich Low_complexity Low_complexity 3 133 0 754 170 0 0 chr6 147503488 147503600 -34911642 - AluJo SINE Alu -195 117 6 2529 74 0 0 chr6 147503634 147503932 -34911310 + AluY SINE Alu 1 298 -13 1829 106 8 4 chr6 147504256 147504502 -34910740 + AluSx SINE Alu 49 295 -17 336 259 65 102 chr6 147506546 147506594 -34908648 - MLT1J LTR MaLR -2 509 461 2216 97 10 0 chr6 147506594 147506894 -34908348 + AluSp SINE Alu 1 303 -10 336 259 65 102 chr6 147506894 147507138 -34908104 - MLT1J LTR MaLR -50 461 228 333 0 0 0 chr6 147507494 147507531 -34907711 + (CA)n Simple_repeat Simple_repeat 2 38 0 439 260 41 27 chr6 147507569 147507715 -34907527 + MIR SINE MIR 53 200 -62 419 178 248 0 chr6 147508292 147508393 -34906849 + FLAM_C SINE Alu 17 142 -1 823 224 69 30 chr6 147508504 147508736 -34906506 - MIR SINE MIR 0 262 22 247 319 60 24 chr6 147508778 147508944 -34906298 - L1ME LINE L1 -215 5906 5735 2226 88 0 7 chr6 147509209 147509523 -34905719 - AluSx SINE Alu 0 312 1 255 207 115 0 chr6 147509523 147509610 -34905632 + L1ME LINE L1 5803 5899 -222 270 301 44 9 chr6 147509809 147509948 -34905294 + L1MC4a LINE L1 5474 5602 -519 249 321 77 50 chr6 147509987 147510208 -34905034 + L1MC4a LINE L1 5697 5923 -1885 232 294 78 59 chr6 147510677 147510830 -34904412 + MIR3 SINE MIR 16 171 -37 2361 69 17 0 chr6 147511589 147511879 -34903363 + AluSp SINE Alu 6 300 -13 2374 104 3 0 chr6 147511893 147512202 -34903040 + AluSp SINE Alu 2 311 -2 22 0 0 0 chr6 147512202 147512224 -34903018 + AT_rich Low_complexity Low_complexity 1 22 0 2292 102 17 0 chr6 147512535 147512830 -34902412 + AluSg SINE Alu 1 300 -10 386 208 0 0 chr6 147513648 147513720 -34901522 - L1MB8 LINE L1 0 6178 6107 1970 162 0 0 chr6 147513723 147514032 -34901210 - AluSx SINE Alu -3 309 1 2542 181 108 6 chr6 147514064 147514630 -34900612 - L1MB4 LINE L1 -1 6179 5550 924 283 78 28 chr6 147514695 147515154 -34900088 - L2 LINE L2 -2 3311 2830 266 359 31 8 chr6 147515224 147515352 -34899890 - MIR SINE MIR -124 138 8 1940 142 3 26 chr6 147516081 147516384 -34898858 - AluJo SINE Alu -16 296 1 2286 116 0 0 chr6 147517635 147517928 -34897314 + AluSq SINE Alu 1 293 -20 1585 126 19 72 chr6 147518055 147518373 -34896869 - MER65A LTR ERV1 -35 410 110 2321 148 21 0 chr6 147518387 147518760 -34896482 - L1PA16 LINE L1 -9 6157 5777 2172 111 14 0 chr6 147519020 147519317 -34895925 - AluSx SINE Alu -7 305 5 2104 133 0 16 chr6 147519833 147520142 -34895100 + AluSx SINE Alu 1 304 -8 2123 141 0 0 chr6 147521097 147521401 -34893841 + AluSx SINE Alu 9 312 0 225 293 112 26 chr6 147521734 147521826 -34893416 + MIR SINE MIR 19 124 -84 1533 161 145 10 chr6 147521826 147522130 -34893112 - MER7A DNA MER2_type -2 344 2 225 293 112 26 chr6 147522130 147522153 -34893089 + MIR SINE MIR 124 144 -64 2329 41 45 17 chr6 147522248 147522539 -34892703 + AluY SINE Alu 1 299 -12 2665 55 0 0 chr6 147523235 147523545 -34891697 + AluY SINE Alu 1 310 -1 2081 144 0 3 chr6 147525168 147525467 -34889775 + AluJb SINE Alu 1 298 -14 2085 114 13 17 chr6 147525468 147525767 -34889475 + AluSx SINE Alu 1 298 -14 2226 108 3 0 chr6 147526022 147526317 -34888925 - AluSp SINE Alu -15 298 3 207 0 0 0 chr6 147527494 147527517 -34887725 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 299 280 88 47 chr6 147529317 147529510 -34885732 + MIR SINE MIR 36 236 -26 288 326 149 0 chr6 147531849 147531990 -34883252 + L3 LINE CR1 1414 1575 -2 195 350 53 63 chr6 147532283 147532404 -34882838 + MIR SINE MIR 57 177 -85 2279 101 6 32 chr6 147532404 147532720 -34882522 + AluSx SINE Alu 1 308 -4 195 350 53 63 chr6 147532720 147532804 -34882438 + MIR SINE MIR 177 260 -2 1204 131 131 38 chr6 147532804 147533041 -34882201 + MER46B DNA MER2_type 1 134 -102 585 285 77 8 chr6 147533375 147533610 -34881632 - MIR SINE MIR 0 262 12 866 206 83 115 chr6 147534753 147535092 -34880150 - MLT1H LTR MaLR -2 547 220 236 283 10 40 chr6 147535133 147535232 -34880010 - MLT1H LTR MaLR -458 135 40 335 251 199 41 chr6 147535885 147535984 -34879258 - MIR SINE MIR -22 240 158 2403 78 10 13 chr6 147535984 147536291 -34878951 + AluSg SINE Alu 1 306 -4 335 251 199 41 chr6 147536291 147536362 -34878880 - MIR SINE MIR -104 158 43 335 286 0 0 chr6 147536372 147536449 -34878793 - MIR SINE MIR -146 116 40 274 291 105 24 chr6 147536532 147536742 -34878500 + L1MEd LINE L1 3 229 -5890 317 281 51 55 chr6 147537010 147537284 -34877958 + L1MEd LINE L1 592 864 -5255 500 96 96 0 chr6 147537681 147537754 -34877488 + MADE1 DNA Mariner 1 80 0 249 270 81 40 chr6 147538028 147538202 -34877040 + L1MCc LINE L1 1303 1483 -4940 379 229 48 90 chr6 147538213 147538401 -34876841 + L1ME4a LINE L1 20 199 -6660 265 286 24 48 chr6 147538792 147538918 -34876324 + L1ME4a LINE L1 1066 1188 -5667 1394 249 107 15 chr6 147539088 147539614 -34875628 + L1ME4a LINE L1 1327 1900 -4955 * 1582 241 85 52 chr6 147539613 147540482 -34874760 + L1ME4a LINE L1 2107 3004 -4134 590 143 89 18 chr6 147540477 147540589 -34874653 + L1MB8 LINE L1 5374 5493 -685 * 1655 91 5 0 chr6 147540589 147540797 -34874445 + AluSc SINE Alu 1 209 -100 1229 85 0 0 chr6 147540802 147540955 -34874287 + AluSc SINE Alu 155 307 -2 2236 172 46 21 chr6 147540955 147541505 -34873737 + L1MB8 LINE L1 5482 6084 -88 4660 247 81 6 chr6 147542148 147542385 -34872857 + L1ME4a LINE L1 4306 4524 -2433 1740 173 0 39 chr6 147542385 147542697 -34872545 + AluJb SINE Alu 1 300 -12 4660 247 81 6 chr6 147542697 147543862 -34871380 + L1ME4a LINE L1 4524 5814 -1143 385 207 162 31 chr6 147543875 147544150 -34871092 + L1ME4a LINE L1 5933 6243 -743 1872 221 72 54 chr6 147544880 147545432 -34869810 - MER68 LTR ERV1 0 562 1 25 31 0 0 chr6 147546151 147546183 -34869059 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 147546495 147546519 -34868723 + AT_rich Low_complexity Low_complexity 1 24 0 2024 196 43 26 chr6 147546676 147547094 -34868148 - MLT2B2 LTR ERVL -90 425 1 211 302 16 0 chr6 147547180 147547243 -34867999 - MER91 DNA MER1_type 0 140 77 886 201 73 0 chr6 147547432 147547596 -34867646 + MER58A DNA MER1_type 49 224 0 1795 130 0 0 chr6 147548985 147549231 -34866011 + AluSx SINE Alu 46 291 -21 237 268 14 0 chr6 147549399 147549470 -34865772 + L2 LINE L2 2139 2210 -1104 403 298 163 32 chr6 147549536 147549780 -34865462 + L2 LINE L2 2819 3029 -284 180 0 0 0 chr6 147549780 147549800 -34865442 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2076 107 0 0 chr6 147549805 147550076 -34865166 - AluSx SINE Alu -41 271 1 403 298 163 32 chr6 147550076 147550235 -34865007 + L2 LINE L2 3032 3282 -31 1978 184 43 31 chr6 147551100 147551491 -34863751 - MSTD LTR MaLR 0 396 1 1626 189 105 6 chr6 147551496 147551840 -34863402 - MSTD-int LTR MaLR -6 1729 1352 247 158 0 0 chr6 147551855 147551893 -34863349 - MSTD LTR MaLR -358 38 1 2282 85 0 3 chr6 147552636 147552929 -34862313 + AluSg1 SINE Alu 1 292 -17 696 225 126 26 chr6 147553524 147553755 -34861487 - L1MC5 LINE L1 -59 7902 7649 878 193 74 0 chr6 147553758 147553960 -34861282 + L1MB4 LINE L1 5962 6178 -2 342 213 62 0 chr6 147554519 147554599 -34860643 + L2 LINE L2 3181 3265 -7 21 0 0 0 chr6 147555209 147555230 -34860012 + AT_rich Low_complexity Low_complexity 1 21 0 610 261 145 40 chr6 147555392 147555744 -34859498 + L1ME4a LINE L1 6442 6830 -102 428 306 24 6 chr6 147555857 147556027 -34859215 + L1MC4a LINE L1 5685 5857 -1951 1208 208 15 19 chr6 147556062 147556322 -34858920 - AluJo SINE Alu -53 259 1 2545 94 67 0 chr6 147558508 147558882 -34856360 + L1M1 LINE L1 5346 5744 -560 1045 113 57 34 chr6 147558891 147559068 -34856174 - THE1B LTR MaLR -1 363 183 * 1245 224 7 27 chr6 147559065 147559364 -34855878 + MLT2B1 LTR ERVL 33 325 -195 1000 94 163 0 chr6 147559365 147559525 -34855717 - THE1B LTR MaLR -178 186 1 1086 77 0 39 chr6 147559525 147559609 -34855633 + L1MA2 LINE L1 5745 5822 -482 2221 84 0 0 chr6 147559609 147559884 -34855358 + AluSg SINE Alu 29 303 -7 1086 77 0 39 chr6 147559884 147559955 -34855287 + L1MA2 LINE L1 5822 5894 -410 2177 111 3 13 chr6 147560396 147560712 -34854530 + AluSp SINE Alu 1 313 0 205 296 130 19 chr6 147561747 147561855 -34853387 + L2 LINE L2 3149 3268 -4 2067 112 26 26 chr6 147562887 147563223 -34852019 - AluSx SINE Alu 0 312 1 829 167 0 0 chr6 147563368 147563488 -34851754 + AluJ SINE Alu 2 121 -181 6058 90 39 2 chr6 147563488 147564341 -34850901 + L1PA11 LINE L1 5288 6171 -3 985 156 0 48 chr6 147564354 147564521 -34850721 + AluJ SINE Alu 130 288 -24 332 199 184 59 chr6 147564899 147565035 -34850207 - MIR SINE MIR -43 219 67 2032 178 58 6 chr6 147565389 147565754 -34849488 - MLT1B LTR MaLR -2 388 5 1451 184 48 38 chr6 147565787 147566080 -34849162 + AluJb SINE Alu 1 296 -16 288 302 66 9 chr6 147566335 147566441 -34848801 - MIR SINE MIR -99 163 52 2191 127 3 0 chr6 147566449 147566756 -34848486 + AluSx SINE Alu 1 308 -4 1178 189 115 29 chr6 147566826 147566884 -34848358 + MLT1A1 LTR MaLR 19 71 -294 2851 65 122 5 chr6 147566884 147567285 -34847957 - LTR7 LTR ERV1 -2 448 1 1178 189 115 29 chr6 147567285 147567538 -34847704 + MLT1A1 LTR MaLR 71 357 -8 1196 121 0 0 chr6 147567590 147567756 -34847486 + AluSg/x SINE Alu 137 302 -10 200 358 110 0 chr6 147569423 147569532 -34845710 - L2 LINE L2 -19 3253 3133 967 159 46 26 chr6 147569658 147569853 -34845389 + L1MB4 LINE L1 5980 6178 -2 820 151 96 0 chr6 147570281 147570427 -34844815 + Tigger4(Zombi) DNA MER2_type 56 215 -2516 2498 57 0 3 chr6 147570512 147570808 -34844434 - AluY SINE Alu -16 295 1 1113 179 0 19 chr6 147572575 147572782 -34842460 + AluJb SINE Alu 86 288 -24 2181 114 0 13 chr6 147575580 147575886 -34839356 + AluSq SINE Alu 1 302 -11 1869 134 32 3 chr6 147577017 147577300 -34837942 + AluSx SINE Alu 4 294 -18 528 269 67 26 chr6 147577649 147577842 -34837400 - MIR SINE MIR -41 221 21 862 201 71 43 chr6 147579197 147579381 -34835861 - MER5A DNA MER1_type 0 189 1 22 70 0 0 chr6 147582040 147582083 -34833159 + AT_rich Low_complexity Low_complexity 1 43 0 388 62 0 100 chr6 147582127 147582207 -34833035 + L1MA5 LINE L1 6229 6300 0 2402 72 7 13 chr6 147582213 147582517 -34832725 + AluY SINE Alu 7 308 -3 423 0 0 0 chr6 147582518 147582565 -34832677 + (TA)n Simple_repeat Simple_repeat 1 47 0 314 291 60 55 chr6 147582898 147583102 -34832140 + MIR SINE MIR 38 241 -21 21 0 0 0 chr6 147583825 147583846 -34831396 + AT_rich Low_complexity Low_complexity 1 21 0 479 64 11 160 chr6 147584559 147584597 -34830645 + MADE1 DNA Mariner 1 18 -62 2182 120 7 0 chr6 147584597 147584898 -34830344 - AluSx SINE Alu -9 303 1 479 64 11 160 chr6 147584898 147584953 -34830289 + MADE1 DNA Mariner 18 80 0 2032 110 21 0 chr6 147586742 147587024 -34828218 + AluSx SINE Alu 23 310 -2 1122 237 154 18 chr6 147587028 147587424 -34827818 + Charlie4a DNA MER1_type 32 481 -27 292 323 134 0 chr6 147587582 147587709 -34827533 + MIR3 SINE MIR 34 177 -31 2152 103 41 0 chr6 147588704 147588996 -34826246 + AluSx SINE Alu 1 304 -8 527 253 39 50 chr6 147589123 147589305 -34825937 - MIR SINE MIR -71 191 12 547 310 49 25 chr6 147590815 147591018 -34824224 - MIR SINE MIR -50 212 5 24 0 0 0 chr6 147591101 147591125 -34824117 + AT_rich Low_complexity Low_complexity 1 24 0 2229 98 0 30 chr6 147591209 147591514 -34823728 + AluSg SINE Alu 1 296 -14 1690 176 32 4 chr6 147592156 147592434 -34822808 + AluJb SINE Alu 1 286 -26 7878 28 7 0 chr6 147592681 147594173 -34821069 - L1PA4 LINE L1 0 6155 4657 7727 29 0 1 chr6 147594173 147595063 -34820179 + L1PA4 LINE L1 3783 4673 -1473 516 129 234 1 chr6 147595099 147595216 -34820026 - L1M2 LINE L1 -463 5721 5591 * 527 230 105 46 chr6 147595203 147596029 -34819213 - L1M4 LINE L1 -2699 3447 2340 2254 106 0 0 chr6 147596029 147596321 -34818921 - AluSc SINE Alu -17 292 1 527 230 105 46 chr6 147596321 147596419 -34818823 - L1M4 LINE L1 -3806 2340 2249 412 273 126 75 chr6 147596476 147597040 -34818202 - L2 LINE L2 -1203 2111 1519 3123 116 0 36 chr6 147597438 147597911 -34817331 - L1PA15 LINE L1 0 6165 5710 2093 133 3 3 chr6 147598628 147598973 -34816269 - AluSx SINE Alu 0 345 1 297 159 0 0 chr6 147599328 147599372 -34815870 + MIR3 SINE MIR 116 159 -49 1655 169 124 27 chr6 147599502 147599595 -34815647 - MER47A DNA MER2_type -1957 366 283 1555 194 7 37 chr6 147599595 147599894 -34815348 - AluJo SINE Alu -22 290 1 1655 169 124 27 chr6 147599894 147600131 -34815111 - MER47A DNA MER2_type -2040 283 4 285 281 74 8 chr6 147600405 147600526 -34814716 + L1MEd LINE L1 16 144 -5975 7655 50 16 0 chr6 147600643 147601707 -34813535 - L1PA5 LINE L1 -4 6150 5080 26359 57 6 4 chr6 147601708 147603837 -34811405 + L1PA6 LINE L1 1967 4105 -2049 2609 84 151 8 chr6 147603837 147604229 -34811013 - LTR7 LTR ERV1 -2 448 1 26359 57 6 4 chr6 147604229 147606277 -34808965 + L1PA6 LINE L1 4105 6148 -6 250 268 224 8 chr6 147606271 147606651 -34808591 + L1M4 LINE L1 2752 3213 -2933 * 237 174 0 0 chr6 147606654 147606700 -34808542 + LTR66 LTR ERVL 394 439 -171 304 244 52 43 chr6 147606736 147606851 -34808391 + L1M4 LINE L1 3221 3336 -2810 623 176 70 53 chr6 147606914 147607101 -34808141 - L1MC4a LINE L1 -1643 6165 5976 738 279 18 18 chr6 147607131 147607350 -34807892 + MER58A DNA MER1_type 2 220 -4 225 208 83 14 chr6 147607305 147607377 -34807865 - MER109 Unknown Unknown -798 1634 1558 * 645 288 15 10 chr6 147607377 147607575 -34807667 - L1MC4a LINE L1 -1924 5884 5686 1811 175 3 10 chr6 147608341 147608644 -34806598 + AluJb SINE Alu 1 301 -11 229 133 0 0 chr6 147610306 147610336 -34804906 - Alu SINE Alu -16 117 88 2170 90 35 7 chr6 147610590 147610879 -34804363 - AluSg SINE Alu -13 297 1 1504 220 181 68 chr6 147611004 147611760 -34803482 + L2 LINE L2 1724 2565 -749 2003 186 119 61 chr6 147611761 147612402 -34802840 - LTR28 LTR ERV1 0 1020 109 516 197 241 6 chr6 147612403 147612559 -34802683 - LTR28 LTR ERV1 -286 178 1 1305 268 49 38 chr6 147612559 147612699 -34802543 + L2 LINE L2 2563 2700 -613 2472 90 0 3 chr6 147612699 147613009 -34802233 + AluY SINE Alu 1 309 -2 1305 268 49 38 chr6 147613009 147613536 -34801706 + L2 LINE L2 2700 3243 -70 312 119 0 0 chr6 147613982 147614024 -34801218 + 5S rRNA rRNA 1 42 -79 23 33 0 0 chr6 147617010 147617040 -34798202 + AT_rich Low_complexity Low_complexity 1 30 0 529 325 30 10 chr6 147617156 147617356 -34797886 - MIR SINE MIR -38 224 21 2392 60 0 0 chr6 147617552 147617858 -34797384 + AluY SINE Alu 1 306 0 2100 125 3 10 chr6 147617961 147618272 -34796970 - AluSq SINE Alu -4 309 1 2430 100 0 0 chr6 147619181 147619492 -34795750 + AluSx SINE Alu 1 311 -1 457 296 15 7 chr6 147620891 147621026 -34794216 - MIR3 SINE MIR -32 176 41 1783 180 0 20 chr6 147621180 147621486 -34793756 - AluJb SINE Alu -12 300 1 1361 193 78 11 chr6 147621728 147621998 -34793244 + AluJo SINE Alu 1 288 -24 2261 106 13 0 chr6 147622265 147622567 -34792675 - AluSg SINE Alu -4 306 1 535 243 21 0 chr6 147622601 147622741 -34792501 + MLT1L LTR MaLR 2 144 -471 287 223 142 74 chr6 147622908 147622986 -34792256 + MLT1L LTR MaLR 458 529 -86 1838 167 0 10 chr6 147622986 147623291 -34791951 - AluJo SINE Alu -10 302 1 287 223 142 74 chr6 147623291 147623360 -34791882 + MLT1L LTR MaLR 529 615 0 2340 110 0 0 chr6 147623367 147623676 -34791566 - AluSx SINE Alu -3 309 1 1533 189 91 7 chr6 147623850 147624157 -34791085 + MER58B DNA MER1_type 2 334 -7 811 129 36 57 chr6 147624161 147624301 -34790941 + FLAM_C SINE Alu 3 139 -4 296 247 45 11 chr6 147624314 147624403 -34790839 + MER5B DNA MER1_type 4 95 -83 973 86 0 66 chr6 147624417 147624569 -34790673 + FLAM_C SINE Alu 1 142 -1 198 184 26 0 chr6 147624581 147624619 -34790623 - MER5B DNA MER1_type -138 40 2 7823 153 84 33 chr6 147625094 147626809 -34788433 + L1MCa LINE L1 1 1994 -4613 872 131 0 0 chr6 147626809 147626931 -34788311 + FLAM_C SINE Alu 1 122 -21 2122 118 10 29 chr6 147626951 147627265 -34787977 + AluSq SINE Alu 1 308 -5 1813 159 7 20 chr6 147627436 147627737 -34787505 + AluSq SINE Alu 1 297 -16 1107 160 0 0 chr6 147627738 147627907 -34787335 + AluJo/FRAM SINE Alu 136 304 -8 1567 147 194 8 chr6 147627907 147628274 -34786968 + L1MCa LINE L1 1887 2321 -4105 1521 161 19 30 chr6 147628279 147628546 -34786696 + AluJb SINE Alu 7 270 -42 2009 114 0 35 chr6 147628646 147628977 -34786265 - AluSc SINE Alu 0 321 1 1134 152 164 37 chr6 147629314 147629558 -34785684 - ORSL DNA AcHobo 0 275 1 238 346 128 5 chr6 147630138 147630326 -34784916 - MIR SINE MIR -4 258 48 26 0 0 0 chr6 147630750 147630776 -34784466 + AT_rich Low_complexity Low_complexity 1 26 0 488 258 0 40 chr6 147630965 147631063 -34784179 + MER5C DNA MER1_type 2 96 -228 3296 124 30 18 chr6 147631063 147631554 -34783688 - LOR1a LTR ERV1 0 497 1 488 258 0 40 chr6 147631554 147631579 -34783663 + MER5C DNA MER1_type 96 120 -204 244 280 13 0 chr6 147631717 147631792 -34783450 + MER5C DNA MER1_type 249 324 0 1699 154 27 24 chr6 147631864 147632162 -34783080 - AluJb SINE Alu -7 305 7 1330 157 180 15 chr6 147632445 147632712 -34782530 + AluJo SINE Alu 1 311 -1 853 166 5 114 chr6 147633451 147633644 -34781598 + FAM SINE Alu 1 172 -3 2308 130 125 10 chr6 147633726 147634110 -34781132 - MSTA LTR MaLR 0 428 1 1251 257 173 35 chr6 147634151 147634672 -34780570 - MLT1G1 LTR MaLR -2 593 1 492 289 83 43 chr6 147634717 147634869 -34780373 + MLT1I LTR MaLR 14 158 -251 3352 208 41 11 chr6 147634869 147635503 -34779739 - MER82 DNA MER2_type 0 653 1 492 289 83 43 chr6 147635503 147635724 -34779518 + MLT1I LTR MaLR 158 402 -7 1818 155 3 11 chr6 147635767 147636087 -34779155 + AluJb SINE Alu 1 318 0 29 47 0 0 chr6 147636363 147636406 -34778836 + AT_rich Low_complexity Low_complexity 1 43 0 1774 124 48 105 chr6 147637004 147637130 -34778112 + L1MB7 LINE L1 5787 5919 -265 2263 101 3 0 chr6 147637130 147637428 -34777814 - AluSp SINE Alu -14 299 1 1774 124 48 105 chr6 147637428 147637721 -34777521 + L1MB7 LINE L1 5919 6182 -2 2834 144 29 0 chr6 147637734 147638150 -34777092 - MSTC LTR MaLR 0 428 1 3351 184 44 39 chr6 147638151 147638874 -34776368 + L1MB8 LINE L1 5452 6178 0 878 147 45 13 chr6 147639960 147640168 -34775074 - AluJ SINE Alu 0 332 120 231 139 0 0 chr6 147640175 147640211 -34775031 - tRNA-Gly-GGA tRNA tRNA -37 38 3 923 101 7 14 chr6 147640211 147640350 -34774892 - AluJ SINE Alu -174 138 1 344 278 122 94 chr6 147641262 147641697 -34773545 - L1M2 LINE L1 -5445 1404 958 1783 153 66 68 chr6 147643521 147643840 -34771402 - MLT1A1 LTR MaLR -1 364 45 1760 127 15 15 chr6 147643840 147644107 -34771135 + AluJb SINE Alu 30 296 -16 1783 153 66 68 chr6 147644107 147644152 -34771090 - MLT1A1 LTR MaLR -320 45 1 5095 196 110 71 chr6 147644157 147645578 -34769664 - MLT1A1-int LTR MaLR -6 1729 254 1819 161 38 0 chr6 147646090 147646382 -34768860 - AluJo SINE Alu -9 303 1 479 274 7 22 chr6 147646916 147647051 -34768191 + MIR SINE MIR 86 218 -44 2206 124 0 13 chr6 147647538 147647852 -34767390 - AluSq SINE Alu -3 310 1 204 348 0 0 chr6 147648000 147648069 -34767173 - L2 LINE L2 -35 3237 3169 1455 159 97 42 chr6 147648742 147649031 -34766211 + AluJb SINE Alu 1 305 -7 356 227 248 21 chr6 147649217 147649358 -34765884 + MER5A DNA MER1_type 15 187 -2 2315 102 0 7 chr6 147649516 147649820 -34765422 - AluSx SINE Alu -10 302 1 248 235 24 24 chr6 147650786 147650871 -34764371 - L2 LINE L2 -1 3271 3187 391 257 125 59 chr6 147650962 147651250 -34763992 - L2 LINE L2 -75 3238 2932 333 260 92 82 chr6 147651789 147651843 -34763399 + LTR16A LTR ERVL 168 220 -230 1717 168 42 0 chr6 147651843 147652129 -34763113 + AluJb SINE Alu 1 298 -14 333 260 92 82 chr6 147652129 147652270 -34762972 + LTR16A LTR ERVL 220 365 -85 3310 286 73 33 chr6 147652322 147654360 -34760882 + ERVL LTR ERVL 2 2190 -2806 2589 264 47 14 chr6 147654450 147655302 -34759940 + L1MEc LINE L1 37 916 -5480 1051 331 83 32 chr6 147655302 147657374 -34757868 + ERVL LTR ERVL 3129 5384 -380 254 332 18 17 chr6 147657494 147657642 -34757600 + LTR16A LTR ERVL 3 127 -323 265 277 193 8 chr6 147657815 147657934 -34757308 + LTR16A LTR ERVL 305 445 -5 189 0 0 0 chr6 147660161 147660182 -34755060 + (A)n Simple_repeat Simple_repeat 1 21 0 216 0 0 0 chr6 147660882 147660906 -34754336 + (A)n Simple_repeat Simple_repeat 1 24 0 907 140 0 22 chr6 147662014 147662150 -34753092 + FLAM_C SINE Alu 1 133 0 2204 91 20 20 chr6 147662165 147662462 -34752780 - AluSx SINE Alu -14 298 2 287 276 179 19 chr6 147663299 147663455 -34751787 + MIR SINE MIR 16 196 -66 183 239 57 57 chr6 147663478 147663566 -34751676 + MIR SINE MIR 67 154 -108 262 258 0 0 chr6 147663993 147664059 -34751183 - MIR3 SINE MIR -23 185 120 1563 126 0 17 chr6 147664306 147664537 -34750705 + AluSg/x SINE Alu 81 307 -3 195 294 29 15 chr6 147665378 147665446 -34749796 - L2 LINE L2 -1 3312 3244 183 129 0 0 chr6 147668595 147668626 -34746616 + (GGA)n Simple_repeat Simple_repeat 1 31 0 14226 111 26 85 chr6 147672726 147674055 -34741187 + Tigger1 DNA MER2_type 4 1114 -1304 2360 84 0 10 chr6 147674055 147674353 -34740889 + AluSp SINE Alu 1 295 -18 14226 111 26 85 chr6 147674353 147675586 -34739656 + Tigger1 DNA MER2_type 1114 2417 -1 32 75 0 0 chr6 147675700 147675767 -34739475 + AT_rich Low_complexity Low_complexity 1 67 0 608 227 69 81 chr6 147678061 147678321 -34736921 - MIR SINE MIR 0 262 6 318 137 0 0 chr6 147680091 147680142 -34735100 - L1MC4 LINE L1 -1339 6703 6653 1723 171 3 14 chr6 147680612 147680922 -34734320 + AluSx SINE Alu 1 307 0 352 301 41 24 chr6 147681072 147681195 -34734047 + L2 LINE L2 3140 3264 -8 469 167 0 0 chr6 147681264 147681342 -34733900 + MER57A LTR ERV1 301 378 -25 2298 86 3 10 chr6 147683100 147683403 -34731839 - AluSq SINE Alu -12 301 1 27 29 0 0 chr6 147684312 147684346 -34730896 + AT_rich Low_complexity Low_complexity 1 34 0 2194 93 17 13 chr6 147684559 147684859 -34730383 + AluSq SINE Alu 1 301 -12 616 242 45 32 chr6 147685549 147685756 -34729486 - L1ME3A LINE L1 -129 6041 5835 2322 98 3 0 chr6 147685837 147686142 -34729100 + AluSp SINE Alu 1 306 -7 203 206 41 103 chr6 147686340 147686437 -34728805 + MIR SINE MIR 123 213 -49 2197 108 3 10 chr6 147686461 147686757 -34728485 + AluSc SINE Alu 1 294 -15 1100 232 77 58 chr6 147687995 147688578 -34726664 + L2 LINE L2 2607 3212 -101 207 262 136 58 chr6 147688716 147688819 -34726423 - MIR SINE MIR -62 146 36 188 268 89 0 chr6 147688977 147689033 -34726209 + MIR SINE MIR 58 118 -144 2329 87 7 17 chr6 147690040 147690340 -34724902 - AluSx SINE Alu -15 297 1 878 238 0 0 chr6 147690416 147690601 -34724641 - AluJo SINE Alu -7 305 121 1901 158 7 7 chr6 147690603 147690913 -34724329 - AluJo SINE Alu -2 310 1 392 228 133 23 chr6 147691165 147691250 -34723992 - L1ME3A LINE L1 -142 6022 5948 189 107 0 0 chr6 147691250 147691278 -34723964 + (TG)n Simple_repeat Simple_repeat 1 28 0 392 228 133 23 chr6 147691278 147691459 -34723783 - L1ME3A LINE L1 -216 5948 5736 612 227 0 13 chr6 147691624 147691774 -34723468 + L1MA10 LINE L1 6186 6333 -1 412 325 46 0 chr6 147691792 147691943 -34723299 + MIR SINE MIR 72 229 -33 245 260 71 79 chr6 147692640 147692767 -34722475 + MIR SINE MIR 67 192 -70 399 283 0 0 chr6 147693055 147693161 -34722081 - MIR SINE MIR 0 262 157 715 161 32 8 chr6 147693161 147693285 -34721957 + MER94 DNA DNA 1 127 -7 248 280 60 20 chr6 147693287 147693387 -34721855 - MIR SINE MIR -113 149 46 2156 123 10 13 chr6 147693938 147694247 -34720995 - AluSx SINE Alu -4 308 1 1975 116 15 0 chr6 147694825 147695093 -34720149 + AluSg SINE Alu 28 299 -11 897 94 0 8 chr6 147695496 147695613 -34719629 + AluSq/x SINE Alu 21 136 -176 2296 94 3 13 chr6 147695613 147695920 -34719322 + AluSc SINE Alu 1 304 -5 2028 111 35 3 chr6 147696065 147696353 -34718889 - AluSx SINE Alu -15 297 1 509 304 111 36 chr6 147696360 147697267 -34717975 - L1 LINE L1 -1675 4471 3511 2009 166 12 18 chr6 147697428 147697771 -34717471 - MER2 DNA MER2_type -3 341 1 240 273 160 13 chr6 147697894 147698044 -34717198 + L2 LINE L2 649 820 -2494 3423 290 82 38 chr6 147698108 147699194 -34716048 - L2 LINE L2 -826 2488 1312 2673 171 13 15 chr6 147699194 147699651 -34715591 - MSTB2 LTR MaLR -1 456 1 3423 290 82 38 chr6 147699651 147700110 -34715132 - L2 LINE L2 -2002 1312 875 1151 308 114 20 chr6 147700107 147700593 -34714649 + L2 LINE L2 2453 3055 -258 * 2072 52 0 4 chr6 147700593 147700843 -34714399 - L1PA8 LINE L1 -2 6170 5922 1151 308 114 20 chr6 147700843 147701129 -34714113 + L2 LINE L2 3055 3313 0 2440 96 0 0 chr6 147701767 147702079 -34713163 - AluSx SINE Alu 0 312 1 465 119 60 0 chr6 147702154 147702238 -34713004 + Tigger3(Golem) DNA MER2_type 2605 2693 -336 522 56 28 0 chr6 147702238 147702310 -34712932 + Tigger3(Golem) DNA MER2_type 2634 2707 -322 302 279 99 9 chr6 147702324 147702435 -34712807 - MIR3 SINE MIR -51 157 37 2455 93 0 0 chr6 147702778 147703090 -34712152 - AluSx SINE Alu 0 312 1 2194 89 0 7 chr6 147703127 147703407 -34711835 - AluY SINE Alu -33 278 1 1357 161 24 0 chr6 147703649 147703860 -34711382 + Tigger3(Golem) DNA MER2_type 1 216 -2813 456 101 0 3 chr6 147703868 147704063 -34711179 + AluSx SINE Alu 1 251 -58 491 190 8 16 chr6 147704163 147704284 -34710958 + AluY SINE Alu 183 302 -9 4653 96 41 142 chr6 147704288 147704366 -34710876 + Tigger3(Golem) DNA MER2_type 211 295 -2734 186 71 0 0 chr6 147704366 147704394 -34710848 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 2375 49 7 0 chr6 147704403 147704689 -34710553 - AluY SINE Alu -23 288 1 4653 96 41 142 chr6 147704689 147705160 -34710082 + Tigger3(Golem) DNA MER2_type 303 820 -2209 838 168 0 0 chr6 147705160 147705285 -34709957 - FLAM_C SINE Alu -18 125 1 4653 96 41 142 chr6 147705285 147705599 -34709643 + Tigger3(Golem) DNA MER2_type 820 1164 -1865 2388 127 0 29 chr6 147705599 147705946 -34709296 + MER1B DNA MER1_type 1 337 0 4653 96 41 142 chr6 147705946 147706088 -34709154 + Tigger3(Golem) DNA MER2_type 1164 3029 0 447 299 30 8 chr6 147706088 147706222 -34709020 + L2 LINE L2 3165 3301 -12 1966 139 0 32 chr6 147706679 147706988 -34708254 + AluJb SINE Alu 1 299 -13 35 71 0 0 chr6 147707265 147707335 -34707907 + AT_rich Low_complexity Low_complexity 1 70 0 1856 158 7 10 chr6 147707527 147707824 -34707418 - AluJb SINE Alu -12 300 5 1277 186 77 14 chr6 147708833 147709118 -34706124 + L1MA7 LINE L1 5986 6288 -3 2076 133 3 19 chr6 147709134 147709450 -34705792 + AluSx SINE Alu 1 311 -1 838 232 67 0 chr6 147709502 147709666 -34705576 - AluJo SINE Alu -19 293 119 1068 209 21 4 chr6 147710299 147710533 -34704709 - L1MD3 LINE L1 -26 7969 7732 25 0 0 0 chr6 147710861 147710886 -34704356 + AT_rich Low_complexity Low_complexity 1 25 0 346 335 39 32 chr6 147710909 147711064 -34704178 - MIR SINE MIR -82 180 25 2401 83 3 3 chr6 147712104 147712406 -34702836 + AluSp SINE Alu 1 302 -11 1793 165 7 32 chr6 147712456 147712765 -34702477 - AluJo SINE Alu -11 301 1 4460 132 1 32 chr6 147712877 147712901 -34702341 + L1PB4 LINE L1 5461 5484 -672 2038 122 0 53 chr6 147712901 147713221 -34702021 + AluSx SINE Alu 1 303 -9 4460 132 1 32 chr6 147713221 147713785 -34701457 + L1PB4 LINE L1 5484 6026 -130 2037 121 10 7 chr6 147713785 147714082 -34701160 + AluSq SINE Alu 3 300 -13 4460 132 1 32 chr6 147714082 147714210 -34701032 + L1PB4 LINE L1 6026 6156 0 1788 143 18 28 chr6 147714559 147714845 -34700397 + AluJo SINE Alu 5 287 -25 34 24 0 0 chr6 147714867 147714908 -34700334 + AT_rich Low_complexity Low_complexity 1 41 0 1441 109 187 34 chr6 147715250 147715517 -34699725 - AluSg1 SINE Alu -1 308 1 3330 186 28 13 chr6 147716279 147716946 -34698296 - Tigger7 DNA MER2_type -1 2586 2 662 224 106 12 chr6 147717371 147717532 -34697710 + MER8 DNA MER2_type 1 176 -63 349 141 47 0 chr6 147717618 147717682 -34697560 - Tigger2 DNA MER2_type -2651 67 1 2472 70 3 0 chr6 147719404 147719704 -34695538 + AluSg SINE Alu 1 301 -9 811 209 40 6 chr6 147720131 147720308 -34694934 - MER5A DNA MER1_type 0 189 7 634 242 108 22 chr6 147720811 147721034 -34694208 + L2 LINE L2 2579 2820 -494 189 0 0 0 chr6 147722684 147722705 -34692537 + (A)n Simple_repeat Simple_repeat 1 21 0 391 220 110 0 chr6 147724048 147724166 -34691076 - L2 LINE L2 -39 3274 3144 302 318 108 7 chr6 147724930 147725078 -34690164 - MIR3 SINE MIR -9 199 37 2226 115 0 0 chr6 147725304 147725599 -34689643 + AluSx SINE Alu 1 295 -17 302 260 30 50 chr6 147726185 147726285 -34688957 + MIR3 SINE MIR 104 201 -7 1826 154 17 0 chr6 147726793 147727086 -34688156 + AluJb SINE Alu 1 298 -14 833 107 8 0 chr6 147727086 147727217 -34688025 + (GA)n Simple_repeat Simple_repeat 2 133 0 2416 71 3 0 chr6 147728177 147728471 -34686771 + AluSg SINE Alu 1 295 -15 2157 179 24 51 chr6 147729524 147729993 -34685249 - L1PA15 LINE L1 0 6165 5710 441 36 0 0 chr6 147730710 147730765 -34684477 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 2357 59 3 3 chr6 147730767 147731054 -34684188 - AluY SINE Alu -24 287 1 359 358 40 0 chr6 147731213 147731389 -34683853 - MIR SINE MIR -68 194 12 1555 126 0 17 chr6 147731989 147732220 -34683022 - AluSg/x SINE Alu -3 307 81 283 258 0 0 chr6 147732467 147732533 -34682709 + MIR3 SINE MIR 120 185 -23 226 259 133 36 chr6 147732882 147733048 -34682194 - MIR SINE MIR -14 248 67 338 263 179 19 chr6 147733071 147733227 -34682015 - MIR SINE MIR -66 196 16 239 280 153 13 chr6 147733901 147734058 -34681184 + L1MC5 LINE L1 7751 7929 -32 2365 107 0 0 chr6 147734064 147734372 -34680870 + AluSx SINE Alu 2 309 -3 287 223 142 74 chr6 147734379 147734448 -34680794 - MLT1L LTR MaLR 0 615 552 1838 167 0 10 chr6 147734448 147734753 -34680489 + AluJo SINE Alu 1 302 -10 287 223 142 74 chr6 147734753 147734831 -34680411 - MLT1L LTR MaLR -63 552 458 535 243 21 0 chr6 147734998 147735138 -34680104 - MLT1L LTR MaLR -471 144 2 2030 110 15 0 chr6 147735172 147735444 -34679798 + AluSg SINE Alu 1 276 -34 524 284 109 29 chr6 147835785 147836024 -34579218 + MIR SINE MIR 3 260 -2 304 200 35 24 chr6 147836435 147836520 -34578722 + MIR SINE MIR 37 122 -140 191 295 125 27 chr6 147836507 147836619 -34578623 + MIR SINE MIR 31 153 -109 * 50 83 0 0 chr6 147836655 147836775 -34578467 + GC_rich Low_complexity Low_complexity 1 120 0 260 228 0 30 chr6 147836782 147836883 -34578359 + (CCGCG)n Simple_repeat Simple_repeat 5 102 0 25 0 0 0 chr6 147837219 147837244 -34577998 + AT_rich Low_complexity Low_complexity 1 25 0 240 287 35 35 chr6 147837410 147837497 -34577745 + L2 LINE L2 3181 3267 -5 1903 58 0 8 chr6 147837645 147837885 -34577357 - AluSc SINE Alu -1 308 71 2494 74 0 0 chr6 147837885 147838196 -34577046 - AluY SINE Alu 0 311 1 485 183 12 0 chr6 147838197 147838279 -34576963 - AluSc SINE Alu -226 83 1 240 271 14 14 chr6 147838771 147838841 -34576401 - MIR3 SINE MIR -46 162 93 237 234 31 0 chr6 147839700 147839764 -34575478 - MIR SINE MIR -97 111 46 * 1041 203 10 0 chr6 147839756 147839958 -34575284 - MIR SINE MIR -35 227 24 685 273 95 30 chr6 147840344 147840648 -34574594 + MER5C DNA MER1_type 1 324 0 620 148 8 31 chr6 147840794 147840922 -34574320 - MER20 DNA MER1_type 0 219 95 271 321 177 21 chr6 147841874 147842117 -34573125 + L3 LINE CR1 778 1058 -519 1918 159 3 3 chr6 147842282 147842591 -34572651 + AluJb SINE Alu 1 309 -3 205 350 65 24 chr6 147842717 147842840 -34572402 - MIR3 SINE MIR -67 141 14 285 264 101 74 chr6 147843021 147843169 -34572073 - L2 LINE L2 -6 3266 3115 350 245 42 49 chr6 147843169 147843312 -34571930 - MIR SINE MIR 0 262 121 1184 126 5 40 chr6 147843372 147843571 -34571671 - AluSp SINE Alu -11 302 111 414 227 55 39 chr6 147843686 147843814 -34571428 - MIR SINE MIR -117 145 16 211 224 35 17 chr6 147844717 147844775 -34570467 + MIR SINE MIR 86 144 -118 325 212 131 61 chr6 147844931 147845030 -34570212 - MIR SINE MIR -61 147 42 197 316 126 35 chr6 147845159 147845333 -34569909 - L2 LINE L2 -164 3108 2919 227 256 0 12 chr6 147845401 147845487 -34569755 + T-rich Low_complexity Low_complexity 5 89 0 267 307 0 34 chr6 147845702 147845878 -34569364 + C-rich Low_complexity Low_complexity 3 172 0 252 267 13 13 chr6 147847377 147847461 -34567781 - MIR SINE MIR -68 140 67 1277 176 13 4 chr6 147847693 147847932 -34567310 - AluJb SINE Alu 0 312 72 522 239 9 0 chr6 147848384 147848497 -34566745 - MIR SINE MIR -143 119 6 415 235 228 0 chr6 147848744 147848893 -34566349 + MER5A DNA MER1_type 7 189 0 1166 106 12 6 chr6 147849873 147850043 -34565199 - AluY SINE Alu -7 304 134 387 294 48 0 chr6 147850043 147850169 -34565073 + MIR SINE MIR 84 215 -47 416 259 67 7 chr6 147850275 147850426 -34564816 - MIR SINE MIR -13 249 88 553 133 44 0 chr6 147850897 147850987 -34564255 - L1M2 LINE L1 -518 5773 5680 545 161 90 13 chr6 147850981 147851136 -34564106 + L1 LINE L1 2976 3142 -3004 * 354 276 20 0 chr6 147851137 147851235 -34564007 - MIR SINE MIR -54 208 109 343 311 67 22 chr6 147851960 147852095 -34563147 - MIR SINE MIR -2 260 120 36 70 0 0 chr6 147852195 147852266 -34562976 + GC_rich Low_complexity Low_complexity 1 71 0 418 171 17 52 chr6 147852281 147852572 -34562670 + C-rich Low_complexity Low_complexity 1 281 0 234 91 0 0 chr6 147852590 147852623 -34562619 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 828 269 67 29 chr6 147854265 147854640 -34560602 + L2 LINE L2 2811 3199 -114 25 0 0 0 chr6 147854819 147854844 -34560398 + AT_rich Low_complexity Low_complexity 1 25 0 231 163 23 0 chr6 147855386 147855429 -34559813 - MIR SINE MIR -141 121 78 207 351 0 14 chr6 147855810 147855884 -34559358 - MIR SINE MIR -114 94 22 216 196 105 0 chr6 147856489 147856577 -34558665 - L2 LINE L2 -251 3021 2921 536 344 28 31 chr6 147856604 147856892 -34558350 - L2 LINE L2 -485 2829 2543 1672 177 0 3 chr6 147857251 147857539 -34557703 + AluJo SINE Alu 9 295 -17 304 224 20 61 chr6 147858129 147858227 -34557015 + L1ME4a LINE L1 5982 6075 -46 427 338 26 79 chr6 147858401 147858694 -34556548 + L1MEc LINE L1 2114 2343 -3872 2024 153 0 3 chr6 147858694 147859007 -34556235 + AluSx SINE Alu 1 312 0 427 338 26 79 chr6 147859007 147859099 -34556143 + L1MEc LINE L1 2343 2438 -3777 301 130 37 0 chr6 147859115 147859169 -34556073 + L1MEc LINE L1 3031 3086 -3129 586 265 117 0 chr6 147859730 147859892 -34555350 + MIR SINE MIR 79 259 -3 359 207 47 24 chr6 147860396 147860565 -34554677 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 301 253 46 0 chr6 147861121 147861208 -34554034 - MIR SINE MIR -77 131 41 379 218 109 54 chr6 147861548 147861695 -34553547 - MER113 DNA MER1_type? -78 443 289 917 165 64 16 chr6 147862040 147862228 -34553014 + AluJb SINE Alu 1 197 -115 2324 79 3 3 chr6 147862230 147862535 -34552707 - AluSg SINE Alu -5 305 1 201 299 186 21 chr6 147862660 147862757 -34552485 - L2 LINE L2 0 3272 3160 451 311 117 12 chr6 147862761 147863102 -34552140 - L2 LINE L2 -4 3268 2892 268 318 23 23 chr6 147864102 147864234 -34551008 + L2 LINE L2 2919 3050 -222 646 283 65 41 chr6 147864319 147864689 -34550553 - MLT1K LTR MaLR -46 542 138 381 316 77 4 chr6 147865057 147865287 -34549955 - MIR SINE MIR -12 250 4 1775 80 22 36 chr6 147865615 147865889 -34549353 - AluY SINE Alu -41 270 1 267 262 0 0 chr6 147865892 147865953 -34549289 - MER5A DNA MER1_type -1 188 128 849 168 95 10 chr6 147865955 147866170 -34549072 + L1ME1 LINE L1 5238 5468 -698 810 179 0 15 chr6 147866170 147866304 -34548938 - FLAM_C SINE Alu -11 132 1 2428 236 72 5 chr6 147866327 147866953 -34548289 + L1ME1 LINE L1 5479 6146 -20 2039 117 0 19 chr6 147866953 147867260 -34547982 - AluSx SINE Alu -1 311 11 257 265 48 0 chr6 147867329 147867412 -34547830 - MER5A DNA MER1_type -53 136 50 269 50 0 25 chr6 147867422 147867462 -34547780 + (TCCCC)n Simple_repeat Simple_repeat 4 42 0 235 0 86 0 chr6 147867463 147867498 -34547744 + CT-rich Low_complexity Low_complexity 4 41 0 1666 153 12 40 chr6 147867645 147867966 -34547276 + AluJo SINE Alu 1 312 0 1442 133 53 15 chr6 147867969 147868283 -34546959 + MLT2C2 LTR ERVL 25 349 -48 431 167 11 0 chr6 147868303 147868393 -34546849 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 277 77 0 0 chr6 147868393 147868432 -34546810 + MLT2C2 LTR ERVL 477 515 0 378 296 28 0 chr6 147868479 147868587 -34546655 + MLT1K LTR MaLR 2 112 -476 754 260 135 15 chr6 147868638 147869051 -34546191 + MLT1K LTR MaLR 75 570 -18 523 246 75 53 chr6 147869342 147869529 -34545713 - L1ME LINE L1 -612 5552 5362 313 256 0 0 chr6 147869708 147869786 -34545456 - MIR SINE MIR -96 166 89 731 321 172 20 chr6 147869897 147870396 -34544846 - MLT1L LTR MaLR -7 608 34 268 156 0 94 chr6 147870440 147870504 -34544738 + L1MC/D LINE L1 5411 5468 -2574 1951 111 7 26 chr6 147870504 147870811 -34544431 - AluSx SINE Alu -9 303 3 208 366 137 6 chr6 147871018 147871179 -34544063 + L2 LINE L2 2450 2631 -683 225 0 0 0 chr6 147871426 147871451 -34543791 + (A)n Simple_repeat Simple_repeat 1 25 0 283 337 21 0 chr6 147872233 147872328 -34542914 - L2 LINE L2 -12 3260 3164 348 255 46 27 chr6 147872908 147873043 -34542199 - MIR SINE MIR -67 141 9 260 305 67 13 chr6 147873121 147873280 -34541962 + MIR SINE MIR 35 208 -54 239 316 0 26 chr6 147873624 147873700 -34541542 + L3 LINE CR1 965 1038 -539 459 241 17 81 chr6 147873715 147873889 -34541353 + MIR SINE MIR 29 191 -71 194 259 37 0 chr6 147873923 147873977 -34541265 + MIR SINE MIR 90 145 -63 395 109 11 71 chr6 147874271 147874454 -34540788 + (CCCCCA)n Simple_repeat Simple_repeat 6 177 0 1554 171 10 23 chr6 147874723 147875033 -34540209 + AluJo SINE Alu 5 310 -2 689 256 66 22 chr6 147875189 147875574 -34539668 + MLT1K LTR MaLR 136 588 0 291 235 71 12 chr6 147876019 147876104 -34539138 + MIR SINE MIR 33 122 -86 227 253 0 38 chr6 147876169 147876248 -34538994 - MIR SINE MIR -139 123 48 208 256 35 0 chr6 147876850 147876936 -34538306 + (GGGTG)n Simple_repeat Simple_repeat 3 91 0 * 210 192 0 39 chr6 147876889 147876941 -34538301 + G-rich Low_complexity Low_complexity 3 52 0 492 217 27 82 chr6 147877119 147877303 -34537939 + MER104 DNA Tc2 1 174 -6 678 253 97 4 chr6 147877307 147877669 -34537573 - L2 LINE L2 -159 3154 2760 1037 236 110 14 chr6 147878434 147878726 -34536516 + MLT1H LTR MaLR 1 320 -229 515 346 57 36 chr6 147879641 147880365 -34534877 - L2 LINE L2 -29 3284 2550 1728 151 0 0 chr6 147880814 147881066 -34534176 - AluJb SINE Alu -60 252 1 341 156 141 0 chr6 147881069 147881133 -34534109 - MER5A DNA MER1_type -116 73 1 292 236 40 92 chr6 147881247 147881421 -34533821 + L1MEd LINE L1 1046 1210 -4909 422 283 75 42 chr6 147881623 147881835 -34533407 + MIR SINE MIR 34 252 -10 344 224 240 0 chr6 147882161 147882286 -34532956 + MIR3 SINE MIR 17 171 -37 390 258 11 0 chr6 147882984 147883077 -34532165 + MIR SINE MIR 81 174 -88 430 268 80 14 chr6 147883166 147883304 -34531938 + MIR SINE MIR 1 147 -115 276 253 36 0 chr6 147883419 147883502 -34531740 - MER20B DNA MER1_type -605 178 93 268 143 61 0 chr6 147883892 147883941 -34531301 - MIR SINE MIR -98 164 113 379 267 89 30 chr6 147884302 147884467 -34530775 - MIR3 SINE MIR -29 233 39 272 234 57 65 chr6 147884752 147884876 -34530366 + MIR SINE MIR 108 230 -32 401 296 195 19 chr6 147884921 147885060 -34530182 - L2 LINE L2 0 3313 3200 189 74 0 0 chr6 147885060 147885087 -34530155 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 401 296 195 19 chr6 147885087 147885204 -34530038 - L2 LINE L2 -113 3200 3012 214 364 15 38 chr6 147887537 147887669 -34527573 - MIR SINE MIR -85 177 49 605 297 43 9 chr6 147888172 147888404 -34526838 + MLT1D LTR MaLR 263 502 -3 278 271 57 16 chr6 147888424 147888546 -34526696 - MIR SINE MIR -22 240 114 192 323 20 30 chr6 147888894 147888993 -34526249 - MIR SINE MIR -102 160 63 493 324 94 25 chr6 147890544 147890788 -34524454 - MIR SINE MIR 0 262 2 858 284 48 67 chr6 147891169 147891647 -34523595 + MLT1J LTR MaLR 8 476 -35 27 29 0 0 chr6 147891840 147891874 -34523368 + AT_rich Low_complexity Low_complexity 1 34 0 302 96 0 19 chr6 147893185 147893237 -34522005 + (CA)n Simple_repeat Simple_repeat 2 52 0 184 321 28 37 chr6 147893605 147893714 -34521528 + MIR3 SINE MIR 81 188 -20 225 296 42 0 chr6 147893804 147893875 -34521367 - L3 LINE CR1 -199 1378 1305 545 262 8 2 chr6 147894291 147894446 -34520796 - MIR SINE MIR -61 147 34 185 255 153 41 chr6 147895026 147895124 -34520118 + MIR SINE MIR 84 192 -70 279 54 0 0 chr6 147895226 147895263 -34519979 + (TG)n Simple_repeat Simple_repeat 1 37 0 358 277 93 43 chr6 147895829 147896051 -34519191 + MIR SINE MIR 13 256 -6 204 171 37 0 chr6 147896688 147896770 -34518472 + (TCTCTG)n Simple_repeat Simple_repeat 2 86 0 592 273 43 0 chr6 147897697 147897884 -34517358 + MIR SINE MIR 49 243 -19 497 303 100 35 chr6 147899521 147899595 -34515647 + L1MEd LINE L1 748 816 -1674 1881 118 0 87 chr6 147899595 147899927 -34515315 + AluSq SINE Alu 6 308 -5 497 303 100 35 chr6 147899927 147899948 -34515294 + L1MEd LINE L1 816 834 -1656 1120 135 101 10 chr6 147899948 147900156 -34515086 + MER30 DNA MER1_type 4 230 0 497 303 100 35 chr6 147900156 147900222 -34515020 + L1MEd LINE L1 834 894 -1596 216 0 0 0 chr6 147900222 147900246 -34514996 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 497 303 100 35 chr6 147900246 147900813 -34514429 + L1MEd LINE L1 894 1628 -862 1463 171 131 17 chr6 147901180 147901531 -34513711 + L1MB7 LINE L1 5778 6168 -16 237 242 92 25 chr6 147901567 147901687 -34513555 + L1MC4 LINE L1 7609 7736 -306 246 197 0 49 chr6 147901892 147901953 -34513289 + MLT1K LTR MaLR 527 584 -4 3807 167 29 25 chr6 147902145 147902429 -34512813 + L1MB7 LINE L1 5384 5665 -519 2216 163 15 8 chr6 147902429 147902822 -34512420 - MSTD LTR MaLR 0 396 1 3807 167 29 25 chr6 147902822 147903335 -34511907 + L1MB7 LINE L1 5665 6184 0 1242 264 70 15 chr6 147903923 147904320 -34510922 + LTR16C LTR ERVL 71 489 -2 269 266 80 9 chr6 147904328 147904441 -34510801 - MIR SINE MIR -10 252 132 1725 166 34 9 chr6 147904455 147904781 -34510461 - MLT1A1 LTR MaLR -27 338 5 260 143 0 0 chr6 147904786 147904828 -34510414 - MIR SINE MIR -72 136 95 873 250 14 0 chr6 147906240 147906448 -34508794 - MIR SINE MIR -1 261 51 604 305 51 0 chr6 147906950 147907147 -34508095 - MLT1K LTR MaLR -92 496 290 271 281 135 0 chr6 147907374 147907470 -34507772 + MIR3 SINE MIR 48 156 -52 280 323 89 0 chr6 147907774 147907898 -34507344 - MIR SINE MIR -12 250 116 926 221 23 5 chr6 147907939 147908156 -34507086 - MIR SINE MIR -12 250 30 27 0 0 0 chr6 147909163 147909190 -34506052 + AT_rich Low_complexity Low_complexity 1 27 0 251 238 32 0 chr6 147909473 147909536 -34505706 + L2 LINE L2 3248 3312 -1 216 358 15 0 chr6 147909637 147909704 -34505538 + L2 LINE L2 3246 3313 0 289 224 106 12 chr6 147910734 147910819 -34504423 - L2 LINE L2 -172 3100 3008 214 338 13 13 chr6 147910973 147911050 -34504192 + MIR SINE MIR 186 262 0 224 250 22 54 chr6 147911304 147911396 -34503846 + L2 LINE L2 3225 3313 0 244 329 0 0 chr6 147911466 147911550 -34503692 - MER117 DNA MER1_type 0 197 114 251 159 238 0 chr6 147911550 147911613 -34503629 - MLT1K LTR MaLR 0 588 511 270 269 214 55 chr6 147912282 147912464 -34502778 - L2 LINE L2 0 3313 3103 1024 236 36 47 chr6 147912514 147913059 -34502183 + L1MC4 LINE L1 6681 7211 -750 655 250 104 61 chr6 147913229 147913641 -34501601 + L1MC5 LINE L1 7304 7733 -228 24 0 0 0 chr6 147913719 147913743 -34501499 + AT_rich Low_complexity Low_complexity 1 24 0 183 281 72 50 chr6 147913743 147913882 -34501360 - L2 LINE L2 -246 3067 2926 197 315 177 15 chr6 147914090 147914220 -34501022 - MER5B DNA MER1_type -27 151 1 228 252 24 41 chr6 147914483 147914606 -34500636 + C-rich Low_complexity Low_complexity 3 123 0 355 202 90 0 chr6 147914887 147914976 -34500266 + MIR3 SINE MIR 82 178 -30 288 0 0 0 chr6 147915098 147915130 -34500112 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 194 231 39 0 chr6 147915256 147915308 -34499934 - MIR SINE MIR -119 89 36 815 258 186 16 chr6 147915795 147916405 -34498837 - L2 LINE L2 -19 3294 2579 730 229 43 11 chr6 147916446 147916634 -34498608 - MIR SINE MIR -63 199 6 351 257 18 26 chr6 147916939 147917052 -34498190 + MIR SINE MIR 34 145 -117 254 154 0 108 chr6 147917391 147917456 -34497786 - MIR3 SINE MIR -41 167 110 276 243 14 14 chr6 147917716 147917786 -34497456 + L2 LINE L2 3202 3271 -1 577 224 202 22 chr6 147917837 147918285 -34496957 + L2 LINE L2 2736 3263 -50 180 298 83 0 chr6 147918298 147918382 -34496860 - L2 LINE L2 -39 3233 3143 520 246 70 23 chr6 147918441 147918612 -34496630 - MIR SINE MIR -62 200 22 252 0 0 0 chr6 147919556 147919584 -34495658 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 2093 146 0 7 chr6 147919595 147919904 -34495338 + AluJb SINE Alu 1 307 -5 250 196 39 0 chr6 147920079 147920130 -34495112 + (TGAG)n Simple_repeat Simple_repeat 4 56 0 325 267 30 59 chr6 147920378 147920513 -34494729 + MIR3 SINE MIR 15 145 -63 376 176 98 0 chr6 147921243 147921345 -34493897 - Charlie5 DNA MER1_type 0 2624 2513 2979 145 24 19 chr6 147921543 147922123 -34493119 - L1MB8 LINE L1 -5 6173 5591 226 224 61 20 chr6 147922227 147922325 -34492917 + (TTATA)n Simple_repeat Simple_repeat 4 105 0 1976 125 30 7 chr6 147922340 147922643 -34492599 - AluSx SINE Alu -2 310 1 200 31 62 0 chr6 147922701 147922733 -34492509 + (TTAA)n Simple_repeat Simple_repeat 2 35 0 315 234 62 39 chr6 147923335 147923463 -34491779 + MER113 DNA MER1_type? 277 407 -114 400 301 18 37 chr6 147923463 147923626 -34491616 - MER91B DNA MER1_type -27 163 4 248 174 22 0 chr6 147924051 147924097 -34491145 + MIR SINE MIR 77 123 -85 846 207 0 6 chr6 147924207 147924371 -34490871 - AluJb SINE Alu -5 307 145 339 270 7 15 chr6 147924604 147924741 -34490501 + C-rich Low_complexity Low_complexity 2 137 0 671 243 34 70 chr6 147924871 147925254 -34489988 - L1MEd LINE L1 -5173 946 578 642 275 83 68 chr6 147925328 147925725 -34489517 - L1MEd LINE L1 -5567 552 150 * 1214 246 41 52 chr6 147925722 147926035 -34489207 - L1M4 LINE L1 -1543 4603 4288 1680 97 8 0 chr6 147926035 147926294 -34488948 - L1MA2 LINE L1 0 6304 6044 730 122 0 0 chr6 147926295 147926402 -34488840 - U6 snRNA snRNA 0 107 1 1214 246 41 52 chr6 147926402 147926619 -34488623 - L1M4 LINE L1 -1857 4289 4077 243 265 51 20 chr6 147926604 147926702 -34488540 - L1MEd LINE L1 -5930 189 89 * 318 276 96 31 chr6 147926925 147927089 -34488153 - MIR SINE MIR -63 145 25 250 297 11 11 chr6 147927342 147927433 -34487809 + MIR SINE MIR 2 92 -170 896 197 69 5 chr6 147927716 147927919 -34487323 - MER20 DNA MER1_type -3 216 1 202 290 127 24 chr6 147928234 147928392 -34486850 - MIR SINE MIR -58 150 1 271 363 48 8 chr6 147928629 147928753 -34486489 - L2 LINE L2 -5 3308 3180 378 283 66 36 chr6 147929016 147929182 -34486060 + Charlie8 DNA MER1_type 1 171 -2246 680 310 92 41 chr6 147929246 147929527 -34485715 - L2 LINE L2 0 3313 3007 1621 159 12 16 chr6 147929527 147929785 -34485457 - AluJb SINE Alu -55 257 1 680 310 92 41 chr6 147929785 147929871 -34485371 - L2 LINE L2 -306 3007 2927 23 0 0 0 chr6 147930301 147930324 -34484918 + AT_rich Low_complexity Low_complexity 1 23 0 261 109 0 0 chr6 147930842 147930888 -34484354 + (CA)n Simple_repeat Simple_repeat 1 46 0 331 171 0 51 chr6 147931328 147931445 -34483797 + G-rich Low_complexity Low_complexity 1 111 0 185 250 17 0 chr6 147931760 147931820 -34483422 + L2 LINE L2 2917 2977 -295 711 265 93 63 chr6 147931955 147932449 -34482793 + L2 LINE L2 2804 3312 -1 189 291 58 29 chr6 147932449 147932552 -34482690 + MIR3 SINE MIR 98 203 -5 207 0 0 0 chr6 147932911 147932934 -34482308 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 372 22 0 0 chr6 147932933 147932978 -34482264 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 109 0 0 chr6 147933095 147933141 -34482101 + (CA)n Simple_repeat Simple_repeat 1 46 0 203 254 0 45 chr6 147933652 147933719 -34481523 + G-rich Low_complexity Low_complexity 2 65 0 1596 207 33 23 chr6 147933762 147934154 -34481088 - MLT1G LTR MaLR -173 417 22 1073 71 19 0 chr6 147934615 147934770 -34480472 + L1PA10 LINE L1 6011 6168 0 695 241 99 28 chr6 147934788 147935000 -34480242 + MIR SINE MIR 35 261 -1 460 184 37 0 chr6 147935402 147935511 -34479731 + Charlie7 DNA MER1_type 52 164 -2448 362 344 41 0 chr6 147936018 147936140 -34479102 - L2 LINE L2 0 3313 3187 325 265 0 0 chr6 147936145 147936224 -34479018 + MIR SINE MIR 74 145 -63 192 285 76 99 chr6 147936302 147936474 -34478768 - MIR3 SINE MIR -23 185 18 794 312 63 12 chr6 147936961 147937583 -34477659 + L1MEc LINE L1 1156 1710 -4505 516 292 92 50 chr6 147937584 147937844 -34477398 + L1MEc LINE L1 1859 2129 -4267 1694 175 38 9 chr6 147937870 147938185 -34477057 + MER2 DNA MER2_type 22 345 0 226 234 48 32 chr6 147938187 147938311 -34476931 + L1MEc LINE L1 2131 2256 -4140 257 356 83 6 chr6 147938441 147938621 -34476621 - L2 LINE L2 -214 3058 2865 296 186 17 0 chr6 147938735 147938794 -34476448 - MIR3 SINE MIR -28 180 121 266 361 35 18 chr6 147938831 147939000 -34476242 - L2 LINE L2 -590 2724 2553 812 104 37 8 chr6 147939077 147939211 -34476031 - MER72 LTR ERV1 -3 719 582 1457 234 37 18 chr6 147939329 147939710 -34475532 - MER72 LTR ERV1 -334 388 1 463 285 75 5 chr6 147939812 147939998 -34475244 - MIR SINE MIR -6 256 58 469 278 194 15 chr6 147940060 147940323 -34474919 - MLT1J2 LTR MaLR 0 450 141 529 186 41 3 chr6 147940349 147940524 -34474718 - LTR16A1 LTR ERVL 0 457 232 448 293 54 0 chr6 147940556 147940703 -34474539 - LTR16A1 LTR ERVL -302 155 1 207 100 0 0 chr6 147941287 147941317 -34473925 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 275 239 42 0 chr6 147941678 147941749 -34473493 + L2 LINE L2 2976 3049 -223 1327 293 81 16 chr6 147941764 147942259 -34472983 - MLT1K LTR MaLR 0 588 62 399 302 79 25 chr6 147942325 147942527 -34472715 + L2 LINE L2 3100 3312 -1 360 214 48 2 chr6 147942983 147943103 -34472139 + MIR SINE MIR 39 147 -61 288 0 0 0 chr6 147943879 147943911 -34471331 + (CA)n Simple_repeat Simple_repeat 2 33 0 2394 100 3 0 chr6 147944638 147944948 -34470294 - AluSq SINE Alu -2 311 1 195 239 254 0 chr6 147945091 147945158 -34470084 + MIR SINE MIR 22 105 -157 2542 66 0 3 chr6 147945718 147946020 -34469222 - AluY SINE Alu -10 301 1 2122 183 34 9 chr6 147946152 147946600 -34468642 - L1M4 LINE L1 -1111 5035 4577 254 305 26 73 chr6 147946735 147946886 -34468356 + MIR3 SINE MIR 3 146 -62 530 306 201 21 chr6 147948845 147949234 -34466008 + L2 LINE L2 2855 3313 0 240 226 9 26 chr6 147949239 147949321 -34465921 - MIR SINE MIR -77 185 107 404 258 17 17 chr6 147950277 147950397 -34464845 - MIR SINE MIR -73 189 70 285 253 0 0 chr6 147950680 147950763 -34464479 + MIR SINE MIR 61 143 -65 198 225 138 25 chr6 147950917 147950997 -34464245 - MIR SINE MIR -87 121 33 2098 125 7 0 chr6 147951281 147951578 -34463664 - AluSg SINE Alu -11 299 1 659 256 30 6 chr6 147952761 147952929 -34462313 - MIR SINE MIR -63 199 28 2116 194 42 13 chr6 147953717 147954171 -34461071 - MLT1C LTR MaLR 0 467 1 362 284 87 28 chr6 147954646 147954864 -34460378 - L2 LINE L2 -418 2896 2666 1573 246 17 25 chr6 147955061 147955537 -34459705 - L1MD3 LINE L1 0 7995 7524 777 266 158 10 chr6 147955797 147956278 -34458964 + L2 LINE L2 2734 3312 -1 238 267 27 0 chr6 147956620 147956695 -34458547 + L1M3 LINE L1 5699 5775 -393 315 194 140 32 chr6 147956840 147956933 -34458309 + L1ME4a LINE L1 5962 6064 -57 1965 98 0 29 chr6 147957266 147957543 -34457699 + AluSx SINE Alu 44 312 0 232 222 15 0 chr6 147957546 147957606 -34457636 + MIR SINE MIR 104 165 -62 332 259 49 21 chr6 147957752 147957895 -34457347 - Charlie7 DNA MER1_type -6 2606 2460 1714 75 4 26 chr6 147958752 147958979 -34456263 + AluSc SINE Alu 80 301 -8 729 224 101 81 chr6 147958997 147959120 -34456122 + L2 LINE L2 2074 2193 -1121 1825 116 133 21 chr6 147959120 147959457 -34455785 - THE1C LTR MaLR 0 375 1 729 224 101 81 chr6 147959457 147959730 -34455512 + L2 LINE L2 2193 2478 -836 2710 211 141 57 chr6 147959756 147959999 -34455243 - L1ME1 LINE L1 -6 6160 5939 1830 151 33 7 chr6 147959999 147960303 -34454939 - AluJb SINE Alu 0 312 1 2710 211 141 57 chr6 147960303 147960333 -34454909 - L1ME1 LINE L1 -227 5939 5913 722 144 0 0 chr6 147960333 147960437 -34454805 - U6 snRNA snRNA -3 104 1 2710 211 141 57 chr6 147960437 147961111 -34454131 - L1ME1 LINE L1 -253 5913 5166 1969 76 8 38 chr6 147961111 147961375 -34453867 - AluSq SINE Alu -3 310 55 497 333 24 5 chr6 147961376 147961589 -34453653 + MIR SINE MIR 35 251 -11 2057 195 33 24 chr6 147961742 147962081 -34453161 - L1ME1 LINE L1 0 6166 5821 3213 99 5 0 chr6 147962081 147962503 -34452739 + MSTC LTR MaLR 1 424 -4 2057 195 33 24 chr6 147962503 147962615 -34452627 - L1ME1 LINE L1 -345 5821 5711 292 244 39 0 chr6 147962615 147962693 -34452549 + MLT1L LTR MaLR 434 514 -101 264 83 0 0 chr6 147962693 147962729 -34452513 - L1ME1 LINE L1 -533 5709 5674 1770 153 179 16 chr6 147962735 147963120 -34452122 - MER66A LTR ERV1 -4 474 27 881 176 7 0 chr6 147963131 147963284 -34451958 - L1ME1 LINE L1 -498 5668 5515 520 168 9 19 chr6 147963297 147963404 -34451838 + FLAM_C SINE Alu 27 132 -11 315 189 33 33 chr6 147963510 147963663 -34451579 + (CACAC)n Simple_repeat Simple_repeat 1 153 0 378 296 19 19 chr6 147964097 147964259 -34450983 - L2 LINE L2 -443 2871 2710 1080 128 6 34 chr6 147964282 147964461 -34450781 - MER20 DNA MER1_type 0 219 46 1149 167 39 88 chr6 147964530 147964883 -34450359 - MSTD LTR MaLR -2 394 1 403 264 16 24 chr6 147964953 147965078 -34450164 - MLT1J2 LTR MaLR -243 207 84 731 148 16 8 chr6 147965622 147965750 -34449492 - FLAM_C SINE Alu 0 133 5 417 308 44 19 chr6 147966100 147966259 -34448983 - MIR SINE MIR -79 183 21 1338 190 6 2 chr6 147967128 147967434 -34447808 + MLT1A1 LTR MaLR 1 361 -4 1829 307 12 10 chr6 147967642 147968218 -34447024 + MLT1K LTR MaLR 3 579 -9 2112 88 19 29 chr6 147968454 147968761 -34446481 - AluY SINE Alu -7 304 1 225 0 0 0 chr6 147969246 147969271 -34445971 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 779 154 7 24 chr6 147971203 147971471 -34443771 + AluJ SINE Alu 2 312 0 260 323 21 0 chr6 147972208 147972301 -34442941 - MIR SINE MIR -109 153 59 207 234 0 0 chr6 147972534 147972581 -34442661 + L2 LINE L2 3213 3259 -13 1460 168 39 81 chr6 147974337 147974646 -34440596 - AluJo SINE Alu -12 300 5 462 272 15 29 chr6 147975361 147975497 -34439745 + L2 LINE L2 3180 3313 0 491 259 65 22 chr6 147975774 147975959 -34439283 - L2 LINE L2 -3 3310 3118 197 226 97 54 chr6 147976487 147976580 -34438662 - L2 LINE L2 -1343 1971 1875 231 262 90 33 chr6 147976639 147976761 -34438481 - MIR SINE MIR -47 215 87 2309 248 97 26 chr6 147977253 147978088 -34437154 + L1MC4 LINE L1 7119 8012 -30 2004 134 20 0 chr6 147978732 147979024 -34436218 - AluJb SINE Alu -14 298 1 2493 46 0 0 chr6 147981157 147981439 -34433803 - AluSp SINE Alu -31 282 1 576 250 0 0 chr6 147981457 147981585 -34433657 + MIR SINE MIR 84 211 -51 181 205 0 0 chr6 147982778 147982817 -34432425 - MIR SINE MIR 0 262 224 23 54 0 0 chr6 147983058 147983095 -34432147 + GC_rich Low_complexity Low_complexity 1 37 0 319 314 77 0 chr6 147983369 147983589 -34431653 + L1MC4a LINE L1 5678 5790 -331 311 294 64 0 chr6 147984216 147984325 -34430917 + MIR SINE MIR 104 219 -43 2141 39 55 0 chr6 147986002 147986291 -34428951 - AluY SINE Alu 0 316 14 418 289 63 19 chr6 147986756 147986915 -34428327 + L2 LINE L2 3148 3313 0 207 176 0 0 chr6 147987654 147987688 -34427554 + CT-rich Low_complexity Low_complexity 3 36 0 580 233 8 0 chr6 147987762 147987882 -34427360 - FLAM_A SINE Alu -12 121 1 21 0 0 0 chr6 147987888 147987909 -34427333 + AT_rich Low_complexity Low_complexity 1 21 0 338 226 61 9 chr6 147987926 147988041 -34427201 - HAL1b LINE L1 -10 1338 1218 218 258 34 22 chr6 147988997 147989086 -34426156 - MER5A DNA MER1_type -91 98 9 228 362 60 17 chr6 147989380 147989496 -34425746 + L2 LINE L2 2963 3083 -189 259 268 24 12 chr6 147989575 147989657 -34425585 - L2 LINE L2 -241 3072 2990 2269 121 0 0 chr6 147989835 147990133 -34425109 - AluSx SINE Alu -14 298 1 244 283 163 36 chr6 147990133 147990404 -34424838 - L2 LINE L2 -566 2748 2443 2130 107 10 3 chr6 147991639 147991938 -34423304 - AluY SINE Alu -10 301 1 768 282 103 46 chr6 147992117 147992841 -34422401 - L1MC4a LINE L1 -140 6026 5257 478 307 66 17 chr6 147993300 147993662 -34421580 - HAL1 LINE L1 -986 1521 1142 219 125 0 0 chr6 147993662 147993702 -34421540 + (CATA)n Simple_repeat Simple_repeat 3 42 0 22 0 0 0 chr6 147994251 147994273 -34420969 + AT_rich Low_complexity Low_complexity 1 22 0 1922 150 20 10 chr6 147994334 147994501 -34420741 - AluJb SINE Alu -9 303 130 2654 40 0 3 chr6 147994501 147994803 -34420439 - AluY SINE Alu -10 301 1 1922 150 20 10 chr6 147994803 147994935 -34420307 - AluJb SINE Alu -182 130 1 1998 127 0 33 chr6 147994942 147995241 -34420001 - AluJb SINE Alu -12 300 12 1790 169 3 34 chr6 147995406 147995726 -34419516 - AluJo SINE Alu -2 310 1 2369 96 0 0 chr6 147995765 147996057 -34419185 - AluSc SINE Alu -17 292 1 1096 195 162 2 chr6 147996505 147996810 -34418432 - L1MB7 LINE L1 -36 6144 5794 1867 134 100 14 chr6 147997050 147997409 -34417833 - MLT1B LTR MaLR 0 390 1 1971 146 0 3 chr6 147997687 147997981 -34417261 - AluJb SINE Alu -19 293 1 199 281 64 82 chr6 147998055 147998201 -34417041 + MIR SINE MIR 1 145 -117 1629 188 59 34 chr6 147998201 147998557 -34416685 + MLT1A1 LTR MaLR 1 365 0 199 281 64 82 chr6 147998557 147998581 -34416661 + MIR SINE MIR 145 168 -94 823 156 31 0 chr6 147998763 147998891 -34416351 - FLAM_C SINE Alu -11 132 1 1821 182 3 0 chr6 147999023 147999325 -34415917 - AluJo SINE Alu -8 304 2 30 83 0 0 chr6 147999342 147999414 -34415828 + AT_rich Low_complexity Low_complexity 1 72 0 1040 169 0 6 chr6 147999629 147999806 -34415436 - AluJb SINE Alu 0 312 137 214 282 153 0 chr6 148000395 148000480 -34414762 + MIR SINE MIR 53 150 -112 2049 91 15 0 chr6 148000610 148000873 -34414369 + AluSx SINE Alu 1 267 -45 325 328 90 0 chr6 148000908 148001042 -34414200 - MIR SINE MIR -2 260 115 1755 129 18 7 chr6 148001215 148001518 -34413724 - AluSx SINE Alu 0 306 1 292 226 0 0 chr6 148001830 148001883 -34413359 - MER117 DNA MER1_type -50 147 95 314 151 65 43 chr6 148002071 148002164 -34413078 + Charlie5 DNA MER1_type 2366 2460 -152 1748 154 14 7 chr6 148002167 148002452 -34412790 - AluJo SINE Alu -25 287 1 1693 149 48 34 chr6 148003324 148003619 -34411623 + AluJo SINE Alu 1 299 -13 219 69 0 0 chr6 148004642 148004671 -34410571 + (T)n Simple_repeat Simple_repeat 1 29 0 2027 123 0 29 chr6 148004756 148005064 -34410178 + AluSx SINE Alu 1 299 -13 2215 162 56 21 chr6 148005126 148005557 -34409685 - L1MB7 LINE L1 -2 6182 5737 595 200 0 0 chr6 148006091 148006191 -34409051 + FAM SINE Alu 1 100 -85 474 189 0 0 chr6 148006246 148006320 -34408922 + FAM SINE Alu 85 158 -27 4034 192 53 21 chr6 148008805 148009621 -34405621 - MER21B LTR ERV1 -3 860 19 411 202 45 11 chr6 148009619 148009708 -34405534 - MER21B LTR ERV1 -757 106 15 * 3232 116 7 0 chr6 148009878 148010309 -34404933 + MER57B LTR ERV1 1 434 0 2543 37 0 7 chr6 148010416 148010712 -34404530 - AluY SINE Alu -17 294 1 1448 196 31 25 chr6 148010714 148011000 -34404242 - AluJb SINE Alu -16 296 9 1230 194 34 109 chr6 148011931 148012317 -34402925 - MLT1A1 LTR MaLR -8 357 1 194 340 0 0 chr6 148012353 148012406 -34402836 - L2 LINE L2 0 3313 3261 315 237 13 13 chr6 148012406 148012482 -34402760 + MLT1E LTR MaLR 1 76 -466 574 201 29 58 chr6 148012509 148012627 -34402615 - MER58B DNA MER1_type -2079 341 226 2334 104 0 10 chr6 148012627 148012934 -34402308 + AluSx SINE Alu 1 304 -8 574 201 29 58 chr6 148012934 148012954 -34402288 - MER58B DNA MER1_type -2194 226 207 227 250 18 0 chr6 148013072 148013128 -34402114 - MER58B DNA MER1_type -284 57 1 1278 249 98 48 chr6 148013142 148013580 -34401662 + MLT1E LTR MaLR 126 585 -8 359 253 10 10 chr6 148013646 148013745 -34401497 - MER103 DNA DNA -22 144 46 2163 95 10 10 chr6 148013952 148014247 -34400995 + AluSx SINE Alu 1 295 -17 644 240 12 41 chr6 148014268 148014439 -34400803 + FRAM SINE Alu 1 166 0 243 0 0 0 chr6 148014477 148014504 -34400738 + (CA)n Simple_repeat Simple_repeat 2 28 0 235 302 70 0 chr6 148014825 148014911 -34400331 - MIR SINE MIR -123 139 48 486 305 96 8 chr6 148015172 148015411 -34399831 - L3 LINE CR1 -66 1511 1252 1112 256 109 19 chr6 148015417 148015742 -34399500 - L1M4 LINE L1 -1166 4980 4686 261 0 0 0 chr6 148015742 148015771 -34399471 + (CA)n Simple_repeat Simple_repeat 2 30 0 1112 256 109 19 chr6 148015771 148016012 -34399230 - L1M4 LINE L1 -1460 4686 4363 901 285 133 7 chr6 148016122 148016598 -34398644 - L1ME3A LINE L1 -134 6030 5488 1185 228 104 85 chr6 148016601 148017132 -34398110 - MLT1H LTR MaLR -4 545 5 243 219 16 16 chr6 148017283 148017347 -34397895 - MLT1H-int LTR MaLR -171 1200 1137 227 418 0 29 chr6 148017383 148017553 -34397689 - MLT1H-int LTR MaLR -498 873 709 2420 120 27 19 chr6 148017606 148017671 -34397571 - Tigger2 DNA MER2_type 0 2718 2655 2368 100 0 0 chr6 148017671 148017972 -34397270 - AluSx SINE Alu -11 301 1 2420 120 27 19 chr6 148017972 148018272 -34396970 - Tigger2 DNA MER2_type -63 2655 2350 802 185 0 15 chr6 148018303 148018433 -34396809 - FLAM_C SINE Alu -14 129 2 489 246 100 0 chr6 148018804 148018934 -34396308 - MLT1H1 LTR MaLR -13 542 400 844 249 20 16 chr6 148018954 148019199 -34396043 - L1ME3A LINE L1 -1273 4873 4628 180 125 0 0 chr6 148019199 148019231 -34396011 + (CA)n Simple_repeat Simple_repeat 2 33 0 1395 200 0 15 chr6 148019392 148019662 -34395580 - AluJo SINE Alu -2 310 45 1566 240 88 94 chr6 148019670 148019876 -34395366 - L1ME3A LINE L1 -1743 4403 4197 2117 146 0 0 chr6 148019876 148020184 -34395058 - AluSx SINE Alu -4 308 1 1566 240 88 94 chr6 148020184 148020438 -34394804 - L1ME3A LINE L1 -1949 4197 3943 287 114 23 0 chr6 148020438 148020482 -34394760 + Alu SINE Alu 1 45 -255 899 191 38 0 chr6 148020482 148020639 -34394603 + AluJo/FRAM SINE Alu 137 299 -3 1566 240 88 94 chr6 148020639 148020994 -34394248 - L1ME3A LINE L1 -2201 3945 3548 1200 249 101 33 chr6 148022166 148022563 -34392679 + MLT1E LTR MaLR 52 475 -118 1401 193 52 91 chr6 148022568 148022725 -34392517 + MLT1B LTR MaLR 2 164 -226 669 224 18 88 chr6 148022725 148022820 -34392422 + FRAM SINE Alu 2 81 -221 1964 105 12 62 chr6 148022820 148023144 -34392098 - AluSx SINE Alu -4 308 1 669 224 18 88 chr6 148023144 148023218 -34392024 + FRAM SINE Alu 81 159 -7 1401 193 52 91 chr6 148023218 148023465 -34391777 + MLT1B LTR MaLR 164 390 0 530 220 51 0 chr6 148023465 148023575 -34391667 + MLT1E LTR MaLR 444 559 -8 2248 110 0 3 chr6 148023680 148023979 -34391263 + AluSx SINE Alu 4 301 -11 2383 62 3 3 chr6 148027648 148027939 -34387303 - AluY SINE Alu -20 291 1 2808 170 52 6 chr6 148027941 148028477 -34386765 - L1MB8 LINE L1 -6 6172 5612 2131 143 92 2 chr6 148029761 148030161 -34385081 - MER31A LTR ERV1 -49 436 1 21 0 0 0 chr6 148030386 148030407 -34384835 + AT_rich Low_complexity Low_complexity 1 21 0 596 278 53 27 chr6 148030581 148030768 -34384474 + L2 LINE L2 3118 3309 -4 1327 94 0 11 chr6 148030888 148031068 -34384174 + AluSg/x SINE Alu 127 304 -6 966 265 77 63 chr6 148031188 148031682 -34383560 + MLT1L LTR MaLR 7 507 -108 274 264 169 20 chr6 148032041 148032189 -34383053 + MER5A DNA MER1_type 6 175 -14 * 381 271 75 8 chr6 148032063 148032196 -34383046 - MER5B DNA MER1_type -29 149 8 516 245 20 27 chr6 148032822 148032969 -34382273 - L2 LINE L2 -1 3312 3167 653 213 0 53 chr6 148033020 148033258 -34381984 + MLT1D LTR MaLR 233 505 0 288 280 0 0 chr6 148033320 148033395 -34381847 - L2 LINE L2 -13 3300 3226 1829 140 0 18 chr6 148033425 148033710 -34381532 + AluJb SINE Alu 1 280 -32 234 91 0 0 chr6 148033710 148033743 -34381499 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 846 21 0 0 chr6 148033798 148033895 -34381347 + L1P LINE L1 4 100 -6046 862 185 38 8 chr6 148035210 148035470 -34379772 + L1MD2 LINE L1 6041 6359 0 22 0 0 0 chr6 148035534 148035556 -34379686 + AT_rich Low_complexity Low_complexity 1 22 0 246 153 0 0 chr6 148035686 148035745 -34379497 + A-rich Low_complexity Low_complexity 1 59 0 383 349 7 7 chr6 148036240 148036386 -34378856 - L2 LINE L2 -196 3076 2931 255 180 27 81 chr6 148036425 148036454 -34378788 - L1ME4a LINE L1 -34 6087 6058 2045 106 0 11 chr6 148036454 148036767 -34378475 + AluSx SINE Alu 2 311 0 255 180 27 81 chr6 148036767 148036847 -34378395 - L1ME4a LINE L1 -63 6058 5983 193 356 131 26 chr6 148036916 148037495 -34377747 + L2 LINE L2 568 1207 -2107 1632 144 96 0 chr6 148037561 148037831 -34377411 + AluSq SINE Alu 1 296 -17 2121 142 58 34 chr6 148037842 148038222 -34377020 + MSTA LTR MaLR 1 389 -39 2035 128 16 3 chr6 148038222 148038528 -34376714 + AluSg SINE Alu 1 310 0 1294 261 140 29 chr6 148039123 148040024 -34375218 - L2 LINE L2 -5 3308 2302 1142 151 62 10 chr6 148040612 148040804 -34374438 + MER2 DNA MER2_type 1 202 -143 852 137 0 38 chr6 148040804 148040935 -34374307 + FLAM_C SINE Alu 1 126 -17 309 89 0 0 chr6 148040938 148040983 -34374259 + (CA)n Simple_repeat Simple_repeat 2 46 0 340 221 15 0 chr6 148041054 148041122 -34374120 + MER2 DNA MER2_type 267 335 -10 2383 82 7 0 chr6 148042555 148042848 -34372394 + AluSx SINE Alu 18 312 0 2030 123 20 3 chr6 148043314 148043614 -34371628 + AluSx SINE Alu 1 305 -7 376 259 118 15 chr6 148043792 148043927 -34371315 - MIR SINE MIR -112 150 2 2487 81 0 0 chr6 148043973 148044281 -34370961 - AluY SINE Alu -3 308 1 1747 162 0 32 chr6 148045362 148045671 -34369571 - AluJb SINE Alu -13 299 1 213 219 0 0 chr6 148045962 148046003 -34369239 - L2 LINE L2 -11 3302 3262 2462 71 7 7 chr6 148046168 148046477 -34368765 - AluY SINE Alu -2 309 1 243 357 84 29 chr6 148046597 148046835 -34368407 + L2 LINE L2 2811 3061 -211 226 184 58 107 chr6 148047098 148047201 -34368041 - HsTC2 DNA Tc2 -211 1687 1590 2311 94 19 10 chr6 148047260 148047567 -34367675 - AluSx SINE Alu -2 310 1 25 0 0 0 chr6 148047841 148047866 -34367376 + AT_rich Low_complexity Low_complexity 1 25 0 261 309 99 0 chr6 148048009 148048090 -34367152 + L2 LINE L2 3153 3241 -31 2198 108 23 7 chr6 148048267 148048573 -34366669 - AluSx SINE Alu -1 311 1 626 204 9 0 chr6 148048799 148048912 -34366330 - MER58A DNA MER1_type 0 224 111 340 235 15 0 chr6 148048961 148049029 -34366213 - MER58A DNA MER1_type -2 105 37 207 57 0 94 chr6 148049074 148049127 -34366115 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 273 109 0 0 chr6 148049428 148049474 -34365768 + (T)n Simple_repeat Simple_repeat 1 46 0 839 151 88 19 chr6 148049595 148049908 -34365334 - L1MCb LINE L1 -4501 2063 1641 5667 129 25 5 chr6 148049911 148050784 -34364458 + MER4D LTR ERV1 4 894 -9 3435 178 91 80 chr6 148050834 148051456 -34363786 - L1MCb LINE L1 -4853 1192 578 2022 134 3 7 chr6 148051456 148051746 -34363496 - AluSx SINE Alu -23 289 1 3435 178 91 80 chr6 148051746 148052367 -34362875 - L1MCb LINE L1 -5467 578 337 2141 133 0 3 chr6 148052367 148052675 -34362567 - AluSx SINE Alu -5 307 1 3435 178 91 80 chr6 148052675 148053005 -34362237 - L1MCb LINE L1 -5708 337 12 2406 82 0 7 chr6 148053005 148053308 -34361934 - AluSc SINE Alu -8 301 1 1962 101 109 24 chr6 148053479 148053855 -34361387 + LTR23 LTR ERV1 29 436 -1 21 82 0 0 chr6 148053875 148053924 -34361318 + AT_rich Low_complexity Low_complexity 1 49 0 831 165 0 0 chr6 148053930 148054063 -34361179 + FLAM_C SINE Alu 1 133 0 196 316 76 13 chr6 148054357 148054436 -34360806 - MIR SINE MIR -105 103 20 1195 163 69 48 chr6 148054529 148054818 -34360424 - AluSx SINE Alu -7 295 1 784 163 0 15 chr6 148055062 148055197 -34360045 - FLAM_C SINE Alu 0 133 1 700 318 50 0 chr6 148055323 148055573 -34359669 + ERVL LTR ERVL 1788 2069 -2927 2185 84 18 3 chr6 148055628 148055912 -34359330 - AluSq SINE Alu -25 288 1 27 49 0 0 chr6 148056284 148056325 -34358917 + AT_rich Low_complexity Low_complexity 1 41 0 700 158 298 0 chr6 148056329 148056487 -34358755 - MER2 DNA MER2_type -140 205 1 21 0 0 0 chr6 148056624 148056645 -34358597 + AT_rich Low_complexity Low_complexity 1 21 0 480 264 169 7 chr6 148057511 148057659 -34357583 + MER5A DNA MER1_type 4 175 -14 1086 173 59 0 chr6 148057744 148057964 -34357278 - Tigger7 DNA MER2_type 0 2587 2355 412 285 103 0 chr6 148058210 148058375 -34356867 + L1MC4a LINE L1 5747 5928 -1880 189 0 0 0 chr6 148058405 148058426 -34356816 + (TG)n Simple_repeat Simple_repeat 2 22 0 2160 110 3 3 chr6 148059219 148059510 -34355732 - AluSg SINE Alu -19 291 1 199 234 43 0 chr6 148060361 148060408 -34354834 - MIR SINE MIR -213 49 1 180 263 35 35 chr6 148061695 148061752 -34353490 + L3 LINE CR1 1512 1568 -9 2138 115 7 10 chr6 148062042 148062347 -34352895 + AluSp SINE Alu 1 304 -9 2674 23 0 0 chr6 148064256 148064556 -34350686 - AluYb8 SINE Alu -18 300 1 206 259 172 0 chr6 148065202 148065260 -34349982 - L2 LINE L2 -2 3311 3244 453 225 0 50 chr6 148065356 148065476 -34349766 - MER94 DNA DNA -20 114 1 353 279 152 13 chr6 148065665 148065823 -34349419 + MER5A DNA MER1_type 10 189 0 666 145 81 16 chr6 148066156 148066280 -34348962 + FLAM_A SINE Alu 2 133 0 369 0 0 0 chr6 148066280 148066321 -34348921 + (TG)n Simple_repeat Simple_repeat 1 41 0 26 30 0 0 chr6 148066762 148066795 -34348447 + AT_rich Low_complexity Low_complexity 1 33 0 798 231 14 56 chr6 148066847 148067063 -34348179 - MER58C DNA MER1_type -8 207 1 2107 109 7 7 chr6 148067287 148067572 -34347670 - AluSx SINE Alu -25 287 3 1523 151 139 30 chr6 148068505 148068843 -34346399 + THE1C LTR MaLR 1 375 0 2280 154 48 24 chr6 148068993 148069338 -34345904 + MSTB LTR MaLR 1 359 -67 1955 147 3 0 chr6 148069338 148069630 -34345612 - AluJb SINE Alu -18 294 2 2280 154 48 24 chr6 148069630 148069700 -34345542 + MSTB LTR MaLR 359 426 0 242 340 0 20 chr6 148070639 148070792 -34344450 + G-rich Low_complexity Low_complexity 6 155 0 182 269 30 82 chr6 148072474 148072608 -34342634 - L2 LINE L2 -75 3238 3112 1977 147 0 10 chr6 148073051 148073350 -34341892 - AluJb SINE Alu -16 296 1 2080 130 20 0 chr6 148074430 148074723 -34340519 - AluSx SINE Alu -13 299 1 2302 86 10 0 chr6 148075187 148075479 -34339763 - AluSx SINE Alu 0 312 18 335 221 15 0 chr6 148076908 148076976 -34338266 - MER2 DNA MER2_type -10 335 267 309 89 0 0 chr6 148077047 148077092 -34338150 + (TG)n Simple_repeat Simple_repeat 2 46 0 847 151 0 0 chr6 148077107 148077226 -34338016 - FLAM_C SINE Alu -24 119 1 1094 146 11 11 chr6 148077239 148077417 -34337825 - MER2 DNA MER2_type -167 178 1 1260 268 136 27 chr6 148078005 148078907 -34336335 + L2 LINE L2 2302 3308 -5 28 71 0 0 chr6 148079420 148079476 -34335766 + AT_rich Low_complexity Low_complexity 1 56 0 1375 178 34 55 chr6 148080353 148080543 -34334699 + AluJb SINE Alu 1 184 -128 2446 72 3 3 chr6 148080543 148080849 -34334393 - AluSg SINE Alu -4 306 1 1375 178 34 55 chr6 148080849 148080951 -34334291 + AluJb SINE Alu 184 287 -25 243 0 0 0 chr6 148080951 148080978 -34334264 + (TG)n Simple_repeat Simple_repeat 1 27 0 2090 119 10 0 chr6 148084025 148084152 -34331090 + AluSx SINE Alu 1 125 -187 207 0 0 0 chr6 148084152 148084175 -34331067 + (CA)n Simple_repeat Simple_repeat 2 24 0 2090 119 10 0 chr6 148084175 148084349 -34330893 + AluSx SINE Alu 125 305 -7 180 200 0 0 chr6 148084619 148084659 -34330583 + A-rich Low_complexity Low_complexity 1 40 0 736 189 133 82 chr6 148087032 148087265 -34327977 + MIR SINE MIR 18 262 0 325 323 13 20 chr6 148088565 148088701 -34326541 + MIR3 SINE MIR 2 135 -95 223 255 78 0 chr6 148090247 148090298 -34324944 + L2 LINE L2 3210 3264 -8 3025 204 159 40 chr6 148091243 148092198 -34323044 + Charlie1a DNA MER1_type 9 1077 -378 1337 223 50 13 chr6 148092205 148092523 -34322719 - MER58B DNA MER1_type -11 330 1 1489 163 60 23 chr6 148092524 148092873 -34322369 + Charlie1a DNA MER1_type 1084 1445 -10 2081 94 0 22 chr6 148094536 148094813 -34320429 + AluSg SINE Alu 9 279 -31 22 0 0 0 chr6 148094814 148094836 -34320406 + GC_rich Low_complexity Low_complexity 1 22 0 268 314 165 8 chr6 148094908 148095029 -34320213 - L2 LINE L2 -4 3268 3129 781 184 61 0 chr6 148095159 148095306 -34319936 - FRAM SINE Alu -10 156 1 432 219 54 22 chr6 148095702 148095861 -34319381 + L1MC/D LINE L1 5653 5816 -338 2276 84 63 20 chr6 148095884 148096231 -34319011 - THE1B LTR MaLR -2 362 1 284 230 92 112 chr6 148096706 148096858 -34318384 - L2 LINE L2 -2 3270 3122 182 349 111 8 chr6 148097482 148097608 -34317634 - L2 LINE L2 -4 3309 3171 1271 113 0 0 chr6 148097810 148097978 -34317264 - AluSg/x SINE Alu -16 296 129 21 57 0 0 chr6 148098435 148098470 -34316772 + AT_rich Low_complexity Low_complexity 1 35 0 239 277 54 69 chr6 148098961 148099091 -34316151 - MIR SINE MIR -115 147 20 2415 87 0 3 chr6 148099423 148099733 -34315509 + AluSc SINE Alu 1 309 0 328 246 48 24 chr6 148100571 148100697 -34314545 + L1MC4 LINE L1 7908 8036 -6 1331 112 0 0 chr6 148100830 148101008 -34314234 - AluSg/x SINE Alu -5 307 130 1842 97 127 0 chr6 148100835 148101102 -34314140 - AluSx SINE Alu 0 302 2 315 264 157 35 chr6 148101104 148101301 -34313941 - HAL1 LINE L1 -21 2486 2266 1805 189 0 0 chr6 148101402 148101698 -34313544 - AluJb SINE Alu -14 298 3 2122 126 23 0 chr6 148101704 148102006 -34313236 - AluSx SINE Alu -3 309 1 22 0 0 0 chr6 148102702 148102724 -34312518 + AT_rich Low_complexity Low_complexity 1 22 0 602 200 0 9 chr6 148104045 148104155 -34311087 + FLAM_A SINE Alu 1 109 -33 21 0 0 0 chr6 148104340 148104361 -34310881 + AT_rich Low_complexity Low_complexity 1 21 0 284 296 130 35 chr6 148104983 148105098 -34310144 - MIR SINE MIR -123 139 14 1493 129 165 39 chr6 148105831 148105996 -34309246 + THE1C LTR MaLR 1 144 -231 297 0 0 0 chr6 148105996 148106029 -34309213 + (TC)n Simple_repeat Simple_repeat 1 33 0 1493 129 165 39 chr6 148106029 148106196 -34309046 + THE1C LTR MaLR 144 375 0 186 71 0 0 chr6 148106326 148106354 -34308888 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 300 248 50 50 chr6 148107203 148107304 -34307938 + L1ME4a LINE L1 5793 5893 -228 1893 170 3 0 chr6 148108397 148108691 -34306551 + AluSx SINE Alu 1 295 -17 521 314 173 29 chr6 148108876 148109143 -34306099 - L1M4 LINE L1 -913 5233 5006 1681 182 0 45 chr6 148109143 148109451 -34305791 + AluJo SINE Alu 1 294 -18 521 314 173 29 chr6 148109451 148109743 -34305499 - L1M4 LINE L1 -1140 5006 4593 2173 100 16 3 chr6 148109860 148110169 -34305073 + AluSp SINE Alu 1 313 0 25 0 0 0 chr6 148110444 148110469 -34304773 + AT_rich Low_complexity Low_complexity 1 25 0 1126 121 20 15 chr6 148111142 148111341 -34303901 + L1MA5A LINE L1 4130 4329 -1817 2245 123 0 3 chr6 148111341 148111650 -34303592 - AluSx SINE Alu -4 308 1 5487 130 48 33 chr6 148111650 148111772 -34303470 + L1MA5A LINE L1 4843 4962 -1335 2246 103 3 23 chr6 148111772 148112082 -34303160 - AluSp SINE Alu -4 309 6 5487 130 48 33 chr6 148112082 148112448 -34302794 + L1MA5A LINE L1 4962 5321 -976 180 0 0 0 chr6 148112448 148112468 -34302774 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5487 130 48 33 chr6 148112468 148113353 -34301889 + L1MA5A LINE L1 5321 6224 -73 1445 118 22 26 chr6 148113353 148113581 -34301661 + MER30 DNA MER1_type 2 228 -2 5487 130 48 33 chr6 148113581 148113657 -34301585 + L1MA5A LINE L1 6224 6297 0 422 217 141 49 chr6 148113913 148114097 -34301145 - L1MC/D LINE L1 -1986 5822 5622 1625 174 42 11 chr6 148114119 148114406 -34300836 + AluJo SINE Alu 4 299 -13 288 0 0 0 chr6 148114406 148114438 -34300804 + (TG)n Simple_repeat Simple_repeat 2 33 0 496 250 85 28 chr6 148114704 148114880 -34300362 + MIR SINE MIR 45 230 -32 1476 266 156 39 chr6 148115622 148116654 -34298588 + HAL1 LINE L1 769 1921 -586 347 193 110 28 chr6 148116849 148116958 -34298284 + HAL1b LINE L1 730 847 -501 238 268 28 84 chr6 148117149 148117328 -34297914 + HAL1 LINE L1 2334 2502 -5 1472 90 10 0 chr6 148117338 148117538 -34297704 - L1PA8A LINE L1 -18 6113 5912 243 268 161 13 chr6 148117900 148118051 -34297191 - MIR3 SINE MIR -64 144 1 349 228 336 7 chr6 148118769 148118918 -34296324 - MIR SINE MIR -56 206 9 1800 166 80 40 chr6 148119223 148119748 -34295494 - Charlie1a DNA MER1_type 0 1455 910 * 2447 209 102 13 chr6 148119743 148120218 -34295024 - Charlie1a DNA MER1_type -1976 785 229 1805 77 81 4 chr6 148120218 148120465 -34294777 - AluY SINE Alu -45 266 1 2447 209 102 13 chr6 148120465 148120677 -34294565 - Charlie1a DNA MER1_type -2532 229 37 492 322 68 23 chr6 148120791 148121055 -34294187 - MER102a DNA MER1_type -18 312 37 30 27 0 0 chr6 148121341 148121378 -34293864 + AT_rich Low_complexity Low_complexity 1 37 0 289 254 202 18 chr6 148121577 148121691 -34293551 + L2 LINE L2 2928 3062 -251 317 260 171 16 chr6 148121694 148121817 -34293425 + L2 LINE L2 3172 3313 0 219 103 0 0 chr6 148122060 148122099 -34293143 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 257 243 112 28 chr6 148122290 148122397 -34292845 + L2 LINE L2 3182 3297 -16 457 108 140 0 chr6 148123488 148123581 -34291661 + L1MA8 LINE L1 6185 6290 -1 573 183 25 0 chr6 148124497 148124617 -34290625 + MER94 DNA DNA 1 123 -11 21 0 0 0 chr6 148124845 148124866 -34290376 + AT_rich Low_complexity Low_complexity 1 21 0 608 225 249 5 chr6 148124870 148125079 -34290163 - MIR SINE MIR -1 261 2 640 228 179 0 chr6 148125372 148125556 -34289686 - MIR SINE MIR 0 262 46 1590 199 101 25 chr6 148125887 148126254 -34288988 + MSTD LTR MaLR 2 396 0 447 222 42 84 chr6 148126731 148126898 -34288344 - MIR SINE MIR 0 262 103 476 171 0 0 chr6 148126916 148126998 -34288244 - Tigger5 DNA MER2_type 0 2323 2242 408 188 0 0 chr6 148126995 148127064 -34288178 + Tigger5 DNA MER2_type 2249 2317 -6 * 478 177 0 0 chr6 148127066 148127145 -34288097 - Tigger5 DNA MER2_type -2244 79 1 384 269 96 36 chr6 148127300 148127467 -34287775 - MIR SINE MIR -77 185 9 1133 184 81 53 chr6 148127467 148127885 -34287357 + MER113 DNA MER1_type? 1 430 -91 1777 135 25 53 chr6 148128217 148128535 -34286707 - AluJb SINE Alu -2 310 2 191 254 220 17 chr6 148128633 148128751 -34286491 + MIR SINE MIR 106 247 -15 225 0 0 0 chr6 148128807 148128832 -34286410 + (T)n Simple_repeat Simple_repeat 1 25 0 238 348 137 6 chr6 148129080 148129241 -34286001 - L2 LINE L2 -683 2631 2450 1477 206 10 13 chr6 148129448 148129758 -34285484 + AluSx SINE Alu 3 311 -1 185 313 0 0 chr6 148129826 148129890 -34285352 - L2 LINE L2 -1539 1775 1712 289 127 0 18 chr6 148130759 148130814 -34284428 + MSTB LTR MaLR 373 426 0 2138 195 77 132 chr6 148130820 148130939 -34284303 - L1MC5 LINE L1 -78 7883 7759 1993 137 7 7 chr6 148130939 148131239 -34284003 - AluSx SINE Alu -12 300 1 2138 195 77 132 chr6 148131239 148131324 -34283918 - L1MC5 LINE L1 -202 7759 7671 1426 38 60 0 chr6 148131324 148131507 -34283735 - L1PA5 LINE L1 -6 6148 5955 2138 195 77 132 chr6 148131507 148132332 -34282910 - L1MC5 LINE L1 -290 7671 6803 303 180 33 0 chr6 148132332 148132393 -34282849 - Alu SINE Alu 0 302 240 2138 195 77 132 chr6 148132393 148132405 -34282837 - L1MC5 LINE L1 -1158 6803 6792 851 121 0 15 chr6 148132405 148132537 -34282705 - FLAM_C SINE Alu 0 133 4 2138 195 77 132 chr6 148132537 148132672 -34282570 - L1MC5 LINE L1 -1169 6792 6711 384 322 75 73 chr6 148132719 148133095 -34282147 - L1MC4a LINE L1 -1151 6657 6278 2330 97 0 3 chr6 148133095 148133405 -34281837 - AluSx SINE Alu -3 309 1 384 322 75 73 chr6 148133405 148133643 -34281599 - L1MC4a LINE L1 -1530 6278 6042 676 279 29 24 chr6 148133656 148133864 -34281378 - MER58A DNA MER1_type 0 224 16 889 339 156 27 chr6 148133999 148134917 -34280325 + L2 LINE L2 1942 2977 -337 187 221 0 105 chr6 148135026 148135112 -34280130 + L2 LINE L2 3159 3235 -78 419 337 69 33 chr6 148135404 148135739 -34279503 - L1MEd LINE L1 -5043 1162 816 1741 159 47 25 chr6 148136245 148136610 -34278632 - THE1C LTR MaLR -2 373 1 426 283 43 31 chr6 148136657 148136870 -34278372 - L1MC4a LINE L1 -372 5749 5567 1769 118 4 8 chr6 148136960 148137215 -34278027 + AluSx SINE Alu 58 311 -1 378 0 0 0 chr6 148138277 148138319 -34276923 + (CA)n Simple_repeat Simple_repeat 2 43 0 4529 226 56 43 chr6 148138537 148138649 -34276593 - L1MC4 LINE L1 0 8042 7933 1973 142 0 10 chr6 148138649 148138951 -34276291 + AluJb SINE Alu 1 299 -13 4529 226 56 43 chr6 148138951 148139672 -34275570 - L1MC4 LINE L1 -109 7933 7222 2349 77 7 0 chr6 148139672 148139959 -34275283 - AluSx SINE Alu -12 300 12 4529 226 56 43 chr6 148139959 148140672 -34274570 - L1MC4 LINE L1 -820 7222 6476 2205 134 0 3 chr6 148141285 148141584 -34273658 - AluSx SINE Alu -14 298 1 2335 66 0 10 chr6 148142177 148142465 -34272777 - AluSg SINE Alu -25 285 1 2028 154 3 0 chr6 148142750 148143049 -34272193 - AluJb SINE Alu -12 300 1 253 263 25 0 chr6 148143049 148143167 -34272075 - L1MEd LINE L1 -4124 2272 2152 1580 131 64 32 chr6 148143369 148143682 -34271560 - Tigger2a DNA MER2_type -91 343 21 775 263 100 35 chr6 148143780 148144502 -34270740 - L1MEd LINE L1 -4616 1780 1012 226 200 15 15 chr6 148144714 148144779 -34270463 - L1MEd LINE L1 -5460 745 681 2201 121 0 6 chr6 148145562 148145875 -34269367 + AluSx SINE Alu 1 311 -1 2440 74 0 3 chr6 148145877 148146186 -34269056 + AluY SINE Alu 3 310 -1 189 0 0 0 chr6 148147069 148147090 -34268152 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1740 135 25 7 chr6 148147092 148147374 -34267868 - AluJb SINE Alu -25 287 1 730 191 15 0 chr6 148148181 148148312 -34266930 - FLAM_A SINE Alu 0 133 1 2266 116 0 3 chr6 148148628 148148929 -34266313 - AluSx SINE Alu -12 300 1 419 253 133 20 chr6 148148935 148149085 -34266157 - MIR3 SINE MIR -34 174 8 1629 179 21 21 chr6 148149174 148149454 -34265788 + AluJb SINE Alu 1 280 -32 26 30 0 0 chr6 148149456 148149489 -34265753 + AT_rich Low_complexity Low_complexity 1 33 0 1145 147 6 0 chr6 148150203 148150373 -34264869 + AluJb SINE Alu 136 306 -6 1816 149 25 7 chr6 148150373 148150678 -34264564 + AluSx SINE Alu 1 310 0 2493 57 3 25 chr6 148150746 148151064 -34264178 - AluY SINE Alu 0 311 1 2174 133 26 32 chr6 148151230 148151607 -34263635 - THE1C LTR MaLR 0 375 1 33 25 0 0 chr6 148151783 148151823 -34263419 + AT_rich Low_complexity Low_complexity 1 40 0 210 208 0 0 chr6 148151843 148151896 -34263346 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 390 210 0 0 chr6 148152109 148152171 -34263071 + AluJ/FLAM SINE Alu 1 62 -240 1145 146 0 6 chr6 148152171 148152342 -34262900 - AluJb SINE Alu -142 170 1 249 260 39 0 chr6 148152398 148152475 -34262767 + L1ME4a LINE L1 5968 6047 -74 1715 141 69 4 chr6 148152961 148153238 -34262004 - AluJb SINE Alu -13 299 5 2629 146 81 98 chr6 148153296 148153532 -34261710 - L1MB2 LINE L1 -37 6134 5896 2115 110 0 14 chr6 148153532 148153822 -34261420 - AluSq SINE Alu -16 297 12 2629 146 81 98 chr6 148153822 148154107 -34261135 - L1MB2 LINE L1 -275 5896 5624 2270 103 26 0 chr6 148154107 148154409 -34260833 + AluSp SINE Alu 2 311 -2 2629 146 81 98 chr6 148154409 148154549 -34260693 - L1MB2 LINE L1 -547 5624 5483 625 216 9 0 chr6 148154755 148154871 -34260371 - FLAM_C SINE Alu -25 118 2 1163 161 50 23 chr6 148154874 148155216 -34260026 - L1MB2 LINE L1 -676 5495 5145 1435 153 77 17 chr6 148155390 148155677 -34259565 + AluJb SINE Alu 5 308 -4 2402 101 0 0 chr6 148156347 148156655 -34258587 - AluSg SINE Alu -2 308 1 266 309 114 0 chr6 148157910 148158033 -34257209 + MIR SINE MIR 24 160 -102 28 29 0 0 chr6 148158558 148158593 -34256649 + AT_rich Low_complexity Low_complexity 1 35 0 2271 107 0 3 chr6 148158616 148158914 -34256328 + AluSx SINE Alu 1 297 -15 265 229 33 0 chr6 148158914 148158975 -34256267 + L1ME4a LINE L1 5957 6019 -102 408 218 154 59 chr6 148159017 148159237 -34256005 + L1ME4a LINE L1 5879 6119 -2 1308 262 110 113 chr6 148159374 148159631 -34255611 + L2 LINE L2 651 907 -2407 2165 85 4 4 chr6 148159631 148159903 -34255339 - AluSg SINE Alu -38 272 1 1308 262 110 113 chr6 148159903 148161204 -34254038 + L2 LINE L2 907 2206 -1108 1825 116 133 21 chr6 148161204 148161541 -34253701 - THE1C LTR MaLR 0 375 1 1308 262 110 113 chr6 148161541 148161814 -34253428 + L2 LINE L2 2206 2478 -836 2682 213 112 61 chr6 148161840 148162088 -34253154 - L1ME1 LINE L1 -6 6160 5926 1875 149 30 7 chr6 148162088 148162390 -34252852 - AluJb SINE Alu -3 309 1 2682 213 112 61 chr6 148162390 148162420 -34252822 - L1ME1 LINE L1 -240 5926 5899 722 144 0 0 chr6 148162420 148162524 -34252718 - U6 snRNA snRNA -3 104 1 2682 213 112 61 chr6 148162524 148163198 -34252044 - L1ME1 LINE L1 -267 5899 5140 2436 76 6 31 chr6 148163198 148163515 -34251727 - AluSq SINE Alu -4 309 1 2682 213 112 61 chr6 148163515 148163889 -34251353 - L1ME1 LINE L1 -1026 5140 4787 7271 54 12 0 chr6 148164100 148165195 -34250047 - L1PA8 LINE L1 0 6172 5078 2785 127 27 2 chr6 148165553 148165963 -34249279 - MSTB LTR MaLR -4 422 3 2329 82 7 20 chr6 148166999 148167304 -34247938 - AluSc SINE Alu -8 301 1 265 270 0 27 chr6 148167315 148167389 -34247853 + CT-rich Low_complexity Low_complexity 1 72 0 23 0 0 0 chr6 148167390 148167413 -34247829 + AT_rich Low_complexity Low_complexity 1 23 0 1085 75 3 117 chr6 148167834 148168116 -34247126 - AluSc SINE Alu -59 250 1 281 257 0 27 chr6 148168127 148168201 -34247041 + CT-rich Low_complexity Low_complexity 1 72 0 270 0 0 0 chr6 148168207 148168237 -34247005 + (A)n Simple_repeat Simple_repeat 1 30 0 2140 108 7 7 chr6 148168246 148168543 -34246699 + AluSx SINE Alu 1 297 -15 1230 155 9 23 chr6 148170358 148170577 -34244665 - AluSq SINE Alu -13 300 85 1486 99 0 0 chr6 148170577 148170759 -34244483 - AluSx SINE Alu -130 182 1 613 27 14 0 chr6 148170762 148170835 -34244407 - AluSq/x SINE Alu -179 133 60 24 0 0 0 chr6 148170911 148170935 -34244307 + AT_rich Low_complexity Low_complexity 1 24 0 2079 147 0 3 chr6 148170998 148171311 -34243931 + AluJb SINE Alu 1 312 0 1760 164 34 14 chr6 148171609 148171735 -34243507 + AluJo SINE Alu 10 132 -180 2199 102 0 46 chr6 148171735 148172060 -34243182 + AluSq SINE Alu 1 310 -3 1760 164 34 14 chr6 148172060 148172226 -34243016 + AluJo SINE Alu 132 308 -4 21 0 0 0 chr6 148172684 148172705 -34242537 + AT_rich Low_complexity Low_complexity 1 21 0 2331 115 0 0 chr6 148173087 148173392 -34241850 + AluSx SINE Alu 1 305 -7 1945 86 6 133 chr6 148174934 148175271 -34239971 + AluSx SINE Alu 1 294 -18 2221 123 3 0 chr6 148175730 148176039 -34239203 + AluSx SINE Alu 1 310 -2 1005 143 6 23 chr6 148176170 148176345 -34238897 - FRAM SINE Alu -4 172 1 2363 97 3 0 chr6 148177718 148178029 -34237213 + AluSq SINE Alu 1 312 -1 456 19 0 0 chr6 148178078 148178131 -34237111 + (TG)n Simple_repeat Simple_repeat 2 54 0 186 209 0 0 chr6 148178133 148178176 -34237066 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 296 151 38 0 chr6 148178967 148179020 -34236222 - Alu SINE Alu -3 298 244 1763 152 31 7 chr6 148179027 148179317 -34235925 + AluJb SINE Alu 1 297 -15 2292 89 17 0 chr6 148180054 148180356 -34234886 + AluSx SINE Alu 1 307 -5 23 0 0 0 chr6 148181738 148181761 -34233481 + AT_rich Low_complexity Low_complexity 1 23 0 1732 125 68 18 chr6 148181874 148182153 -34233089 + AluJb SINE Alu 11 303 -9 240 234 0 39 chr6 148182495 148182572 -34232670 - L1MC4 LINE L1 -1337 6985 1984 2322 112 0 0 chr6 148182652 148182957 -34232285 - AluSx SINE Alu -7 305 1 2218 108 0 3 chr6 148183883 148184194 -34231048 + AluSc SINE Alu 1 310 0 915 216 197 38 chr6 148184380 148184695 -34230547 - MLT1A1 LTR MaLR 0 365 1 297 256 64 0 chr6 148184793 148184871 -34230371 + L2 LINE L2 3140 3222 -50 3608 109 35 6 chr6 148185630 148186142 -34229100 - MER1A DNA MER1_type 0 527 1 182 310 14 56 chr6 148186266 148186337 -34228905 + L3b LINE CR1 1196 1263 -320 186 342 105 0 chr6 148186408 148186484 -34228758 + MIR3 SINE MIR 75 158 -50 2001 135 0 10 chr6 148188083 148188371 -34226871 - AluJb SINE Alu -22 290 6 732 153 40 0 chr6 148188572 148188696 -34226546 + AluJo SINE Alu 7 135 -177 1646 158 14 25 chr6 148188696 148188980 -34226262 + AluJo SINE Alu 1 281 -31 787 201 94 26 chr6 148188989 148189223 -34226019 - MIR SINE MIR 0 262 13 283 260 42 0 chr6 148239989 148240085 -34175157 + MER102a DNA MER1_type 231 330 0 2417 88 3 0 chr6 148240335 148240640 -34174602 - AluSg SINE Alu -3 307 2 192 135 81 14 chr6 148240718 148240792 -34174450 + CT-rich Low_complexity Low_complexity 6 84 0 406 108 27 0 chr6 148241551 148241625 -34173617 + CT-rich Low_complexity Low_complexity 1 76 0 1601 188 31 3 chr6 148241625 148241913 -34173329 - AluJo SINE Alu -16 296 1 2206 130 0 0 chr6 148241916 148242216 -34173026 - AluSx SINE Alu -12 300 1 2139 173 27 3 chr6 148242720 148243090 -34172152 + MER95 LTR ERV 14 392 -39 24 91 0 0 chr6 148243494 148243560 -34171682 + AT_rich Low_complexity Low_complexity 1 66 0 478 230 268 28 chr6 148243560 148243773 -34171469 - Charlie2 DNA MER1_type -2518 264 1 2416 52 28 0 chr6 148243793 148244082 -34171160 + AluY SINE Alu 1 297 -14 1481 170 51 18 chr6 148244391 148244667 -34170575 + AluJo SINE Alu 12 296 -16 2270 116 0 7 chr6 148245381 148245682 -34169560 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr6 148245825 148245850 -34169392 + AT_rich Low_complexity Low_complexity 1 25 0 314 295 8 41 chr6 148245989 148246111 -34169131 - L2 LINE L2 -905 2409 2292 831 173 67 48 chr6 148246242 148246450 -34168792 + Charlie2 DNA MER1_type 1 212 -2650 3586 218 117 34 chr6 148246475 148247720 -34167522 + Charlie2a DNA MER1_type 1271 2619 -243 2798 74 11 0 chr6 148247752 148248103 -34167139 - MER1A DNA MER1_type 0 529 175 2059 120 3 16 chr6 148248165 148248337 -34166905 - AluSx SINE Alu -8 304 136 2081 75 0 19 chr6 148248337 148248605 -34166637 - AluY SINE Alu -10 301 39 2059 120 3 16 chr6 148248605 148248740 -34166502 - AluSx SINE Alu -176 136 1 927 178 160 76 chr6 148248834 148249025 -34166217 - AluJo SINE Alu 0 302 80 2251 100 3 0 chr6 148249025 148249316 -34165926 + AluSc SINE Alu 1 292 -17 927 178 160 76 chr6 148249316 148249399 -34165843 - AluJo SINE Alu -222 80 5 251 235 47 12 chr6 148250538 148250623 -34164619 + MER112 DNA MER1_type 5 92 -168 288 0 0 0 chr6 148250626 148250658 -34164584 + (TA)n Simple_repeat Simple_repeat 2 33 0 1586 193 49 26 chr6 148250679 148251065 -34164177 + MLT1C LTR MaLR 8 385 -5 2458 71 0 0 chr6 148251430 148251726 -34163516 + AluY SINE Alu 1 296 -15 282 295 169 18 chr6 148251903 148252085 -34163157 + MIR SINE MIR 38 246 -16 2340 107 0 0 chr6 148252223 148252531 -34162711 + AluSx SINE Alu 1 308 -4 537 285 160 10 chr6 148252795 148253046 -34162196 - MLT1J LTR MaLR -140 339 70 180 0 0 0 chr6 148254168 148254188 -34161054 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 484 287 157 0 chr6 148255055 148255271 -34159971 + MIR SINE MIR 2 251 -11 270 306 95 73 chr6 148256718 148256883 -34158359 + MIR SINE MIR 19 179 -83 2124 113 0 33 chr6 148256883 148257022 -34158220 + AluSx SINE Alu 1 143 -169 2148 87 0 28 chr6 148257022 148257311 -34157931 + AluSc SINE Alu 3 283 -26 312 27 0 0 chr6 148257311 148257348 -34157894 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2124 113 0 33 chr6 148257348 148257509 -34157733 + AluSx SINE Alu 141 292 -20 270 306 95 73 chr6 148257509 148257575 -34157667 + MIR SINE MIR 179 255 -7 531 281 97 0 chr6 148257701 148257886 -34157356 + MIR SINE MIR 28 230 -32 39555 80 9 7 chr6 148258244 148264373 -34150869 - L1PA6 LINE L1 -8 6146 11 1658 199 3 0 chr6 148264439 148264741 -34150501 + AluJb SINE Alu 1 303 -9 465 291 213 28 chr6 148264876 148265237 -34150005 - LTR16A1 LTR ERVL -29 428 1 695 313 77 4 chr6 148265237 148265483 -34149759 - MLT1K LTR MaLR -196 392 129 1598 175 58 90 chr6 148265549 148265949 -34149293 + MLT1B LTR MaLR 2 388 -2 4108 90 45 4 chr6 148266062 148266594 -34148648 + MER41A LTR ERV1 1 554 0 380 78 338 13 chr6 148266594 148266671 -34148571 + MER41A-int LTR ERV1 1 102 -5844 2198 113 13 10 chr6 148266831 148267324 -34147918 - AluSx SINE Alu 0 312 1 422 169 77 85 chr6 148267325 148267455 -34147787 + MER105 DNA DNA 72 200 -4 1026 199 35 0 chr6 148267917 148268036 -34147206 + MER6B DNA MER2_type 2 132 -733 2288 93 7 20 chr6 148268036 148268337 -34146905 - AluSx SINE Alu -15 297 1 1026 199 35 0 chr6 148268337 148268418 -34146824 + MER6B DNA MER2_type 132 209 -1 230 331 54 8 chr6 148268531 148268661 -34146581 - L1M4 LINE L1 -1534 4612 4477 2105 125 6 10 chr6 148268959 148269271 -34145971 + AluSx SINE Alu 1 311 -1 238 316 65 39 chr6 148269685 148269840 -34145402 + LTR16C LTR ERVL 333 491 0 2133 99 57 0 chr6 148269856 148270138 -34145104 - AluSx SINE Alu -14 298 1 270 281 103 27 chr6 148270303 148270488 -34144754 - HAL1 LINE L1 -833 1674 1476 345 304 34 27 chr6 148270560 148270708 -34144534 - LTR16B LTR ERVL 0 464 316 360 0 0 0 chr6 148270903 148270943 -34144299 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 57 0 0 chr6 148271039 148271074 -34144168 + AT_rich Low_complexity Low_complexity 1 35 0 450 177 21 21 chr6 148271132 148271228 -34144014 - L1MC5 LINE L1 -36 7925 7830 3779 175 61 4 chr6 148271675 148272411 -34142831 - L1MC3 LINE L1 0 7785 7008 3815 174 63 3 chr6 148272411 148273328 -34141914 + LTR28 LTR ERV1 1 1020 0 4153 161 61 44 chr6 148273328 148274209 -34141033 - L1MC3 LINE L1 -774 7011 6116 285 200 27 27 chr6 148274376 148274451 -34140791 + L1MEd LINE L1 600 674 -5445 23 54 0 0 chr6 148274560 148274597 -34140645 + AT_rich Low_complexity Low_complexity 1 37 0 204 229 0 21 chr6 148275296 148275344 -34139898 + GA-rich Low_complexity Low_complexity 2 48 0 1098 283 95 47 chr6 148275386 148275480 -34139762 + L1MEd LINE L1 2103 2191 -3938 2103 106 32 0 chr6 148275480 148275764 -34139478 + AluSx SINE Alu 6 298 -14 1098 283 95 47 chr6 148275764 148276208 -34139034 + L1MEd LINE L1 2191 2612 -3517 2284 107 0 0 chr6 148276208 148276506 -34138736 + AluSx SINE Alu 1 298 -14 1098 283 95 47 chr6 148276506 148276722 -34138520 + L1MEd LINE L1 2612 2816 -3313 189 0 0 0 chr6 148276722 148276743 -34138499 + (TA)n Simple_repeat Simple_repeat 2 22 0 2472 88 0 0 chr6 148276743 148277051 -34138191 - AluSq SINE Alu -5 308 1 1098 283 95 47 chr6 148277051 148277604 -34137638 + L1MEd LINE L1 2816 3482 -2647 1924 128 42 76 chr6 148277604 148277814 -34137428 + L1MA4A LINE L1 5930 6123 -180 2277 85 0 28 chr6 148277814 148278132 -34137110 - AluSc SINE Alu 0 309 1 1924 128 42 76 chr6 148278132 148278303 -34136939 + L1MA4A LINE L1 6123 6298 -5 1098 283 95 47 chr6 148278303 148278343 -34136899 + L1MEd LINE L1 3482 3519 -2610 2065 113 0 43 chr6 148278674 148278975 -34136267 - AluSx SINE Alu -24 288 1 1751 162 60 150 chr6 148279052 148279235 -34136007 + MLT1C LTR MaLR 1 199 -268 1569 212 10 0 chr6 148279235 148279528 -34135714 + AluJb SINE Alu 1 296 -16 1751 162 60 150 chr6 148279528 148279857 -34135385 + MLT1C LTR MaLR 199 467 0 2257 109 7 0 chr6 148280375 148280678 -34134564 + AluSx SINE Alu 1 305 -7 2224 147 101 32 chr6 148280739 148281176 -34134066 - MLT1C LTR MaLR 0 467 1 211 139 23 0 chr6 148281529 148281572 -34133670 + T-rich Low_complexity Low_complexity 2 45 0 1740 58 0 0 chr6 148281674 148281880 -34133362 - L1PA4 LINE L1 -8 6147 5942 1869 154 9 38 chr6 148281891 148282210 -34133032 + AluJb SINE Alu 2 311 -1 364 100 0 0 chr6 148282706 148282756 -34132486 - THE1C LTR MaLR -219 156 107 495 106 0 0 chr6 148282757 148282823 -34132419 + FLAM SINE Alu 64 129 -14 1305 77 12 0 chr6 148282824 148282994 -34132248 + THE1C LTR MaLR 204 375 0 260 83 42 42 chr6 148283006 148283054 -34132188 + L2 LINE L2 3223 3270 -2 2790 98 19 3 chr6 148283345 148283714 -34131528 + THE1C LTR MaLR 1 375 0 358 166 10 0 chr6 148284716 148284776 -34130466 - MER5B DNA MER1_type 0 178 125 2409 193 94 2 chr6 148285080 148285112 -34130130 - MLT2B1 LTR ERVL -11 509 481 216 97 0 0 chr6 148285112 148285143 -34130099 + (CA)n Simple_repeat Simple_repeat 2 32 0 2409 193 94 2 chr6 148285143 148285576 -34129666 - MLT2B1 LTR ERVL -39 481 1 1822 149 18 0 chr6 148285741 148286016 -34129226 - AluJb SINE Alu -31 281 2 263 253 219 34 chr6 148286121 148286299 -34128943 + MIR SINE MIR 24 234 -28 2203 124 3 3 chr6 148286727 148287033 -34128209 + AluSq SINE Alu 1 306 -7 369 0 0 0 chr6 148287077 148287118 -34128124 + (TG)n Simple_repeat Simple_repeat 2 42 0 610 298 30 122 chr6 148287820 148288115 -34127127 + L3 LINE CR1 1307 1574 -3 213 159 0 0 chr6 148289260 148289304 -34125938 + CT-rich Low_complexity Low_complexity 3 46 0 5308 143 31 5 chr6 148291528 148291992 -34123250 + L1PB4 LINE L1 5010 5461 -695 1951 171 0 3 chr6 148291992 148292302 -34122940 + AluSx SINE Alu 1 309 -3 5308 143 31 5 chr6 148292302 148292950 -34122292 + L1PB4 LINE L1 5461 6155 -1 2209 107 7 3 chr6 148293039 148293337 -34121905 + AluSc SINE Alu 1 299 -10 3511 124 12 4 chr6 148293452 148293945 -34121297 + LOR1a LTR ERV1 1 497 0 211 289 0 0 chr6 148294593 148294645 -34120597 + L2 LINE L2 3253 3304 -9 22757 42 4 1 chr6 148294871 148298311 -34116931 - L1PA5 LINE L1 0 6154 2706 403 230 351 0 chr6 148299153 148299344 -34115898 - MIR SINE MIR 0 262 5 224 0 65 0 chr6 148299468 148299499 -34115743 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 618 265 15 8 chr6 148300003 148300135 -34115107 - MER63A DNA MER1_type -25 185 53 900 252 91 42 chr6 148300181 148300317 -34114925 - MLT1H LTR MaLR -27 522 394 992 156 161 0 chr6 148300317 148300503 -34114739 - MER20 DNA MER1_type -1 218 3 900 252 91 42 chr6 148300503 148300572 -34114670 - MLT1H LTR MaLR -155 394 330 2067 160 131 19 chr6 148300572 148300991 -34114251 - MER31B LTR ERV1 0 466 1 900 252 91 42 chr6 148300991 148301221 -34114021 - MLT1H LTR MaLR -219 330 15 2234 114 0 19 chr6 148301655 148301972 -34113270 - AluSx SINE Alu -1 311 1 574 203 130 0 chr6 148302083 148302221 -34113021 + MER103 DNA DNA 9 164 -2 2246 107 0 0 chr6 148302723 148303021 -34112221 - AluSg SINE Alu -12 298 1 1428 233 202 34 chr6 148303021 148303515 -34111727 + MLT1E LTR MaLR 16 592 -1 437 216 92 72 chr6 148303949 148304102 -34111140 - L2 LINE L2 -2 3311 3156 2373 83 0 29 chr6 148304110 148304422 -34110820 + AluSg SINE Alu 1 303 -7 210 158 0 0 chr6 148306048 148306086 -34109156 + A-rich Low_complexity Low_complexity 1 38 0 317 326 51 51 chr6 148306477 148306615 -34108627 - L2 LINE L2 -2 3270 3133 3151 137 105 45 chr6 148306901 148307499 -34107743 + MER51A LTR ERV1 1 634 0 267 329 84 42 chr6 148307660 148307897 -34107345 - L2 LINE L2 -75 3197 2951 2218 68 58 17 chr6 148308204 148308499 -34106743 - AluSc SINE Alu -2 307 1 328 332 139 27 chr6 148308742 148309043 -34106199 - L1M2 LINE L1 -5900 949 615 319 297 134 38 chr6 148309252 148309542 -34105700 - L1M2 LINE L1 -5864 985 668 267 103 0 0 chr6 148310080 148310119 -34105123 + (A)n Simple_repeat Simple_repeat 1 39 0 2326 82 3 3 chr6 148310442 148310746 -34104496 - AluSg SINE Alu -6 304 1 324 240 81 59 chr6 148311009 148311171 -34104071 + MIR SINE MIR 9 182 -68 356 272 97 18 chr6 148311284 148311398 -34103844 - L2 LINE L2 -1 3271 3149 204 158 0 0 chr6 148311929 148311967 -34103275 + T-rich Low_complexity Low_complexity 3 40 0 532 237 30 127 chr6 148313039 148313275 -34101967 + MIR SINE MIR 47 259 -3 937 242 31 57 chr6 148313285 148313603 -34101639 - LTR16A LTR ERVL -18 432 123 2391 75 0 0 chr6 148314609 148314902 -34100340 - AluY SINE Alu -18 293 1 290 260 78 42 chr6 148315016 148315208 -34100034 - L1ME4a LINE L1 -88 6033 5835 965 192 155 37 chr6 148315318 148315563 -34099679 - MLT1A1 LTR MaLR 0 365 92 1276 112 0 0 chr6 148315563 148315732 -34099510 - AluSc SINE Alu -9 300 132 2480 85 0 0 chr6 148315732 148316038 -34099204 - AluY SINE Alu -5 306 1 645 165 19 0 chr6 148316038 148316141 -34099101 - MLT1A1 LTR MaLR -260 105 1 387 253 93 33 chr6 148316145 148316295 -34098947 - L1ME4a LINE L1 -466 5655 5497 2245 82 3 10 chr6 148316477 148316769 -34098473 + AluSg SINE Alu 1 290 -20 341 252 145 41 chr6 148316908 148317104 -34098138 + MIR SINE MIR 31 247 -15 2435 97 0 0 chr6 148317394 148317702 -34097540 + AluSc SINE Alu 2 309 0 396 296 202 34 chr6 148318007 148318304 -34096938 - L2 LINE L2 0 3272 2926 332 198 47 23 chr6 148319380 148319466 -34095776 - MER34 LTR ERV1 -6 536 449 1806 128 60 4 chr6 148321156 148321437 -34093805 + AluJb SINE Alu 1 297 -15 568 282 180 14 chr6 148321648 148321992 -34093250 - L1MC/D LINE L1 -2152 5656 5256 2059 132 0 7 chr6 148322295 148322591 -34092651 + AluSx SINE Alu 2 295 -17 34 0 0 0 chr6 148324330 148324364 -34090878 + AT_rich Low_complexity Low_complexity 1 34 0 336 23 0 23 chr6 148325506 148325550 -34089692 + MADE1 DNA Mariner 1 43 -37 234 172 17 69 chr6 148325742 148325800 -34089442 + MIR SINE MIR 69 123 -139 243 0 0 0 chr6 148326231 148326258 -34088984 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 148326658 148326686 -34088556 + AT_rich Low_complexity Low_complexity 1 28 0 787 214 203 32 chr6 148327022 148327237 -34088005 - Charlie2 DNA MER1_type -9 2853 2676 2262 85 14 3 chr6 148327237 148327531 -34087711 - AluSx SINE Alu -15 297 1 787 214 203 32 chr6 148327531 148327694 -34087548 - Charlie2 DNA MER1_type -186 2676 2410 1249 187 22 4 chr6 148327709 148327934 -34087308 + L1M4 LINE L1 15 243 -6299 1117 142 17 11 chr6 148327940 148328116 -34087126 + MER2 DNA MER2_type 169 345 0 247 228 0 18 chr6 148328811 148328819 -34086423 + (CATATA)n Simple_repeat Simple_repeat 3 10 -48 3249 144 88 5 chr6 148328819 148329375 -34085867 - MER7C DNA MER2_type 0 602 1 247 228 0 18 chr6 148329375 148329423 -34085819 + (CATATA)n Simple_repeat Simple_repeat 10 58 0 21 0 0 0 chr6 148329667 148329688 -34085554 + AT_rich Low_complexity Low_complexity 1 21 0 42 65 0 0 chr6 148329811 148329888 -34085354 + AT_rich Low_complexity Low_complexity 1 77 0 1741 169 7 26 chr6 148330014 148330322 -34084920 - AluJb SINE Alu -10 302 1 4385 81 20 6 chr6 148330705 148331251 -34083991 - MER41A LTR ERV1 0 554 1 1752 146 6 62 chr6 148331887 148332033 -34083209 + AluJb SINE Alu 1 121 -191 2419 71 0 3 chr6 148332033 148332330 -34082912 + AluY SINE Alu 1 296 -15 1752 146 6 62 chr6 148332330 148332506 -34082736 + AluJb SINE Alu 121 305 -7 672 178 61 140 chr6 148332514 148332604 -34082638 - MIR SINE MIR -30 232 136 2293 94 3 19 chr6 148332604 148332911 -34082331 + AluSp SINE Alu 1 302 -11 672 178 61 140 chr6 148332911 148333034 -34082208 - MIR SINE MIR -126 136 36 1301 191 4 4 chr6 148334295 148334526 -34080716 - AluJb SINE Alu -81 231 1 256 234 257 9 chr6 148334710 148334843 -34080399 - MIR SINE MIR -62 146 10 233 241 74 0 chr6 148335344 148335398 -34079844 + L2 LINE L2 3210 3267 -5 785 281 18 18 chr6 148336125 148336353 -34078889 - MIR SINE MIR -24 238 11 517 189 205 43 chr6 148336935 148337120 -34078122 + MER20 DNA MER1_type 1 215 -4 2139 128 3 0 chr6 148337162 148337460 -34077782 - AluSx SINE Alu -7 305 7 264 30 0 0 chr6 148337861 148337894 -34077348 + (CA)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr6 148337893 148337913 -34077329 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 605 283 31 0 chr6 148338842 148339033 -34076209 - MIR SINE MIR -9 253 57 1847 153 87 19 chr6 148339068 148339435 -34075807 - L1MC1 LINE L1 -5 6328 5937 273 135 0 0 chr6 148340036 148340073 -34075169 + Tigger4(Zombi) DNA MER2_type 1 37 -2694 1863 270 99 73 chr6 148341835 148343285 -34071957 - HAL1 LINE L1 -42 2465 979 958 253 28 51 chr6 148343365 148343723 -34071519 - MLT1H LTR MaLR -15 575 72 1476 176 15 70 chr6 148345428 148345622 -34069620 - AluJo SINE Alu 0 312 109 185 0 0 39 chr6 148345622 148345648 -34069594 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2195 95 7 3 chr6 148345649 148345943 -34069299 - AluSq SINE Alu -18 295 1 1476 176 15 70 chr6 148345943 148346076 -34069166 - AluJo SINE Alu -202 110 1 395 341 48 12 chr6 148346526 148346737 -34068505 + MIR SINE MIR 36 252 -10 401 308 37 0 chr6 148347079 148347186 -34068056 - L2 LINE L2 0 3272 3162 227 318 40 20 chr6 148348489 148348640 -34066602 + L1MC4a LINE L1 5786 5939 -1869 286 251 156 42 chr6 148349409 148349576 -34065666 - MIR3 SINE MIR -15 193 8 382 320 61 3 chr6 148349963 148350142 -34065100 + MIR SINE MIR 26 210 -52 2221 106 0 10 chr6 148352385 148352686 -34062556 - AluSc SINE Alu -11 298 1 28 0 0 0 chr6 148353720 148353748 -34061494 + AT_rich Low_complexity Low_complexity 1 28 0 604 146 10 10 chr6 148354926 148355029 -34060213 + MER95 LTR ERV 29 131 -300 2034 178 104 7 chr6 148355073 148355488 -34059754 + MER44D DNA MER2_type 1 510 -95 1071 181 65 4 chr6 148355530 148355762 -34059480 + MER95 LTR ERV 186 431 0 292 284 137 0 chr6 148356958 148357060 -34058182 - MIR SINE MIR -63 145 30 3058 135 69 6 chr6 148357460 148357940 -34057302 - LTR64 LTR ERVK 0 513 4 2429 70 0 0 chr6 148359232 148359531 -34055711 + AluY SINE Alu 1 299 -12 564 201 161 40 chr6 148359835 148360158 -34055084 + L1ME1 LINE L1 4815 5280 -866 3087 203 98 35 chr6 148360164 148360956 -34054286 + L1ME1 LINE L1 5325 6166 0 24 0 0 0 chr6 148361329 148361353 -34053889 + AT_rich Low_complexity Low_complexity 1 24 0 215 252 202 0 chr6 148361648 148361767 -34053475 + MIR SINE MIR 118 260 -2 202 250 114 11 chr6 148361810 148361898 -34053344 - MIR3 SINE MIR -43 165 69 2295 112 0 6 chr6 148362557 148362869 -34052373 - AluSx SINE Alu -2 310 1 204 293 245 9 chr6 148363689 148363795 -34051447 + L2 LINE L2 3139 3269 -3 1318 201 24 44 chr6 148363967 148364110 -34051132 - MLT1A1 LTR MaLR -2 363 219 2367 106 0 3 chr6 148364110 148364421 -34050821 - AluSg SINE Alu 0 310 1 1318 201 24 44 chr6 148364421 148364575 -34050667 - MLT1A1 LTR MaLR -146 219 72 481 144 0 44 chr6 148364620 148364710 -34050532 - MLT1A1 LTR MaLR -279 86 1 795 210 27 73 chr6 148364862 148364950 -34050292 - MER3 DNA MER1_type 0 209 119 2334 89 7 3 chr6 148364950 148365254 -34049988 + AluSp SINE Alu 1 305 -8 795 210 27 73 chr6 148365254 148365384 -34049858 - MER3 DNA MER1_type -90 119 1 663 231 141 59 chr6 148366118 148366408 -34048834 + L2 LINE L2 3000 3313 0 2160 100 0 59 chr6 148366475 148366795 -34048447 + AluY SINE Alu 1 301 -10 1224 255 98 11 chr6 148366813 148367182 -34048060 + L2 LINE L2 1879 2279 -1035 327 183 146 0 chr6 148367194 148367276 -34047966 - MLT1I LTR MaLR -38 371 278 2152 88 0 79 chr6 148367471 148367653 -34047589 - AluSc SINE Alu -17 292 144 2487 8 0 0 chr6 148367653 148367919 -34047323 - AluY SINE Alu -11 300 35 2152 88 0 79 chr6 148367919 148368053 -34047189 - AluSc SINE Alu -165 144 1 304 199 45 11 chr6 148368055 148368147 -34047095 - MLT1H LTR MaLR -272 170 40 1503 314 131 11 chr6 148368176 148368720 -34046522 + L2 LINE L2 2314 2922 -392 1331 216 6 26 chr6 148368726 148369037 -34046205 - MLT1D LTR MaLR 0 505 216 2418 91 3 3 chr6 148370178 148370487 -34044755 - AluSq SINE Alu -4 309 1 822 142 21 93 chr6 148370694 148370895 -34044347 - MLT1E2 LTR MaLR -323 182 1 927 301 65 24 chr6 148370898 148371270 -34043972 + L2 LINE L2 2926 3312 -1 1058 198 130 58 chr6 148371475 148371874 -34043368 - MSTC LTR MaLR 0 428 1 451 246 187 10 chr6 148372137 148372329 -34042913 + MLT1J LTR MaLR 214 441 -70 996 230 157 38 chr6 148372329 148372776 -34042466 + LTR33 LTR ERVL 1 500 -21 21 0 0 0 chr6 148373031 148373052 -34042190 + AT_rich Low_complexity Low_complexity 1 21 0 293 334 43 84 chr6 148373191 148373631 -34041611 - L2 LINE L2 -14 3258 2837 971 275 79 20 chr6 148373729 148374133 -34041109 + LTR16B LTR ERVL 12 439 -25 362 288 32 8 chr6 148374135 148374260 -34040982 + L3 LINE CR1 1084 1211 -366 185 341 159 42 chr6 148374567 148375001 -34040241 + L2 LINE L2 1015 1499 -1815 1754 154 170 28 chr6 148375026 148375461 -34039781 + LTR54B LTR ERV1 1 497 -1 22 0 0 0 chr6 148376162 148376184 -34039058 + AT_rich Low_complexity Low_complexity 1 22 0 4103 117 20 32 chr6 148376386 148377042 -34038200 - L1MA5 LINE L1 -10 6290 5643 914 277 92 17 chr6 148377045 148377402 -34037840 + L2 LINE L2 1688 2071 -1243 2195 96 0 23 chr6 148377865 148378166 -34037076 - AluSg SINE Alu -16 294 1 3790 208 26 10 chr6 148378219 148379018 -34036224 + L1P5 LINE L1 368 1179 -5684 1442 119 5 0 chr6 148379024 148379217 -34036025 - AluSx SINE Alu -98 214 21 12824 195 50 21 chr6 148379218 148380201 -34035041 + L1P5 LINE L1 1848 2802 -4065 2213 94 0 20 chr6 148380201 148380498 -34034744 + AluY SINE Alu 5 295 -16 12824 195 50 21 chr6 148380498 148381604 -34033638 + L1P5 LINE L1 2802 3875 -2992 2064 148 3 0 chr6 148381604 148381914 -34033328 + AluSx SINE Alu 1 311 -1 12824 195 50 21 chr6 148381914 148384309 -34030933 + L1P5 LINE L1 3875 6497 -370 2441 51 0 0 chr6 148384307 148384602 -34030640 + L1P LINE L1 3 297 -5849 * 2186 126 0 0 chr6 148384819 148385120 -34030122 - AluSq SINE Alu -12 301 1 514 202 50 25 chr6 148385250 148385369 -34029873 - MER97a DNA MER1_type? -715 179 58 273 289 0 0 chr6 148386572 148386655 -34028587 + (CA)n Simple_repeat Simple_repeat 2 84 0 269 240 67 0 chr6 148386940 148387015 -34028227 + L2 LINE L2 3189 3268 -4 528 292 13 13 chr6 148387216 148387370 -34027872 - MIR3 SINE MIR -41 167 14 2160 119 50 61 chr6 148387541 148387920 -34027322 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr6 148388798 148388827 -34026415 + AT_rich Low_complexity Low_complexity 1 29 0 393 160 0 0 chr6 148388841 148388947 -34026295 + (TA)n Simple_repeat Simple_repeat 1 106 0 496 176 35 0 chr6 148388947 148389032 -34026210 - AluJb SINE Alu -22 290 203 1262 136 16 45 chr6 148389034 148389276 -34025966 + THE1C LTR MaLR 141 375 0 8602 123 40 21 chr6 148389276 148390610 -34024632 + THE1C-int LTR MaLR 1 1359 -221 1045 108 48 12 chr6 148390610 148390777 -34024465 + LTR1 LTR ERV1 63 235 -550 1604 71 33 5 chr6 148390779 148390990 -34024252 + THE1C-int LTR MaLR 1364 1580 0 2026 129 29 40 chr6 148390990 148391128 -34024114 + THE1C LTR MaLR 1 139 -236 4188 160 21 70 chr6 148391128 148391954 -34023288 + LTR1 LTR ERV1 1 785 0 2026 129 29 40 chr6 148391954 148392194 -34023048 + THE1C LTR MaLR 139 375 0 1227 149 9 42 chr6 148392194 148392409 -34022833 - AluJb SINE Alu -104 208 1 2066 113 6 38 chr6 148392717 148393035 -34022207 + AluSc SINE Alu 1 308 -1 2240 117 0 0 chr6 148393611 148393911 -34021331 + AluSx SINE Alu 3 302 -10 2007 143 3 17 chr6 148394994 148395294 -34019948 - AluJb SINE Alu -16 296 1 186 143 0 0 chr6 148395327 148395362 -34019880 + (TC)n Simple_repeat Simple_repeat 2 36 0 194 265 15 0 chr6 148396456 148396524 -34018718 + CT-rich Low_complexity Low_complexity 4 72 0 301 246 17 0 chr6 148397471 148397589 -34017653 + (TA)n Simple_repeat Simple_repeat 1 120 0 183 311 118 42 chr6 148399524 148399643 -34015599 + L2 LINE L2 3144 3271 -1 294 250 161 45 chr6 148399727 148399839 -34015403 - L2 LINE L2 -10 3262 3138 454 267 9 0 chr6 148400691 148400796 -34014446 - MIR SINE MIR -57 205 100 2040 110 37 3 chr6 148401197 148401497 -34013745 - AluSq SINE Alu -3 310 1 25 0 0 0 chr6 148401862 148401887 -34013355 + AT_rich Low_complexity Low_complexity 1 25 0 989 163 0 0 chr6 148402280 148402433 -34012809 - AluSg SINE Alu -155 155 3 222 37 0 0 chr6 148402525 148402552 -34012690 + (T)n Simple_repeat Simple_repeat 1 27 0 502 118 0 0 chr6 148403090 148403158 -34012084 + AluSq SINE Alu 3 70 -242 1017 63 0 8 chr6 148403158 148403284 -34011958 + AluY SINE Alu 173 297 -14 1838 88 0 8 chr6 148403284 148403524 -34011718 + AluSq SINE Alu 76 313 0 323 220 127 59 chr6 148403858 148403976 -34011266 + MER91B DNA MER1_type 2 127 -63 452 263 10 0 chr6 148403994 148404093 -34011149 + MER91B DNA MER1_type 88 187 -3 1717 184 0 16 chr6 148405209 148405518 -34009724 + AluJo SINE Alu 1 304 -8 246 329 24 0 chr6 148405616 148405698 -34009544 - L3 LINE CR1 -48 1529 1446 2221 117 7 0 chr6 148405733 148406042 -34009200 - AluSq SINE Alu -2 311 1 289 200 0 71 chr6 148406121 148406191 -34009051 + MER21B LTR ERV1 12 76 -787 225 376 28 18 chr6 148406218 148406327 -34008915 - MER5A DNA MER1_type -73 116 7 23 0 0 0 chr6 148406544 148406567 -34008675 + AT_rich Low_complexity Low_complexity 1 23 0 335 314 25 16 chr6 148408214 148408335 -34006907 + MIR SINE MIR 21 142 -120 1198 304 84 17 chr6 148408383 148409226 -34006016 + L2 LINE L2 2418 3313 0 2019 108 18 7 chr6 148409357 148409659 -34005583 + AluSx SINE Alu 3 307 0 32 0 0 0 chr6 148410973 148411005 -34004237 + AT_rich Low_complexity Low_complexity 1 32 0 544 243 16 49 chr6 148411072 148411257 -34003985 + MIR SINE MIR 84 262 0 2388 76 0 13 chr6 148411316 148411620 -34003622 - AluSg SINE Alu -10 300 1 21 36 0 0 chr6 148413295 148413323 -34001919 + AT_rich Low_complexity Low_complexity 1 28 0 2065 113 0 3 chr6 148413959 148414276 -34000966 - AluSx SINE Alu 0 316 1 294 282 0 51 chr6 148414474 148414552 -34000690 + L2 LINE L2 3195 3268 -4 258 228 18 18 chr6 148414581 148414638 -34000604 + L3 LINE CR1 1515 1571 -6 312 70 0 0 chr6 148414838 148414881 -34000361 + (TG)n Simple_repeat Simple_repeat 2 44 0 2696 274 53 40 chr6 148415034 148416732 -33998510 + L1ME LINE L1 21 1736 -4344 1113 224 102 11 chr6 148416878 148417010 -33998232 + L1ME LINE L1 2178 2297 -3783 2414 89 0 0 chr6 148417010 148417312 -33997930 + AluSg1 SINE Alu 1 302 -7 1113 224 102 11 chr6 148417312 148417704 -33997538 + L1ME LINE L1 2297 2868 -3212 492 311 66 11 chr6 148417717 148417900 -33997342 + MIR SINE MIR 53 245 -17 1607 177 20 27 chr6 148418050 148418344 -33996898 - AluJo SINE Alu -20 292 1 615 284 69 18 chr6 148419305 148419523 -33995719 - MIR SINE MIR -14 248 20 670 156 89 45 chr6 148420620 148420799 -33994443 - MER53 DNA DNA 0 189 3 2219 129 0 0 chr6 148421166 148421476 -33993766 + AluSg SINE Alu 1 310 0 2364 112 0 0 chr6 148421891 148422204 -33993038 + AluSq SINE Alu 1 313 0 836 213 33 19 chr6 148422272 148422483 -33992759 - MER20 DNA MER1_type 0 219 6 1795 149 26 26 chr6 148422588 148422897 -33992345 - AluJo SINE Alu -3 309 1 29 0 0 0 chr6 148422942 148422971 -33992271 + AT_rich Low_complexity Low_complexity 1 29 0 366 336 66 31 chr6 148424128 148424384 -33990858 + L1ME LINE L1 5484 5748 -373 589 182 86 7 chr6 148424909 148425062 -33990180 - MER69A DNA AcHobo -7 170 6 304 337 119 31 chr6 148426133 148426337 -33988905 + MIR SINE MIR 38 258 -4 409 141 0 24 chr6 148427145 148427230 -33988012 + MER53 DNA DNA 95 177 -12 * 528 151 0 0 chr6 148427157 148427250 -33987992 - MER53 DNA DNA -94 95 3 361 345 88 7 chr6 148427254 148427402 -33987840 - MIR3 SINE MIR -4 204 45 260 281 47 0 chr6 148427802 148427866 -33987376 + L2 LINE L2 3188 3254 -18 1815 107 4 8 chr6 148427893 148428145 -33987097 + AluSc SINE Alu 1 251 -58 39268 33 3 0 chr6 148428277 148434002 -33981240 + L1PA4 LINE L1 411 6147 -8 2648 82 8 8 chr6 148434013 148434393 -33980849 + L1PB2 LINE L1 5769 6148 -3 2136 114 13 3 chr6 148434958 148435265 -33979977 + AluY SINE Alu 1 310 -1 2159 114 7 3 chr6 148435842 148436132 -33979110 + AluSx SINE Alu 1 291 -21 378 296 9 9 chr6 148437300 148437408 -33977834 + MIR SINE MIR 37 144 -64 408 258 10 10 chr6 148437694 148437791 -33977451 - L2 LINE L2 -4 3309 3213 2371 70 0 3 chr6 148437893 148438191 -33977051 - AluY SINE Alu -14 297 1 1943 119 77 0 chr6 148439712 148439998 -33975244 + AluSc SINE Alu 1 308 -1 1503 104 30 13 chr6 148440142 148440373 -33974869 + AluSx SINE Alu 60 294 -18 491 265 16 81 chr6 148440698 148440760 -33974482 + MIR3 SINE MIR 27 91 -117 222 62 0 0 chr6 148440760 148440792 -33974450 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 491 265 16 81 chr6 148440792 148440914 -33974328 + MIR3 SINE MIR 91 199 -9 2803 13 0 0 chr6 148441255 148441566 -33973676 - AluY SINE Alu 0 311 1 2004 143 29 6 chr6 148442020 148442369 -33972873 + MLT1A1 LTR MaLR 4 360 -5 330 343 71 6 chr6 148442974 148443143 -33972099 + L1ME LINE L1 138 317 -5888 371 248 29 22 chr6 148443710 148443847 -33971395 + L1ME LINE L1 975 1112 -5093 4290 249 85 61 chr6 148443901 148444552 -33970690 + L1ME LINE L1 1998 2632 -3583 2181 121 3 13 chr6 148444552 148444867 -33970375 + AluSx SINE Alu 1 312 0 4290 249 85 61 chr6 148444867 148445531 -33969711 + L1ME LINE L1 2632 3278 -2937 7787 20 0 1 chr6 148445531 148446488 -33968754 + L1PA3 LINE L1 5200 6155 0 4290 249 85 61 chr6 148446488 148448044 -33967198 + L1ME LINE L1 3278 4911 -1304 1927 145 3 16 chr6 148448044 148448355 -33966887 + AluJb SINE Alu 1 307 -5 1117 251 86 54 chr6 148448456 148448774 -33966468 + L1ME LINE L1 5190 5496 -743 1733 169 7 0 chr6 148448774 148449077 -33966165 + AluJb SINE Alu 1 305 0 1117 251 86 54 chr6 148449077 148449090 -33966152 + L1ME LINE L1 5496 5507 -732 2151 128 10 0 chr6 148449090 148449395 -33965847 + AluSg SINE Alu 3 310 0 1117 251 86 54 chr6 148449395 148449759 -33965483 + L1ME LINE L1 5507 5912 -327 216 282 0 0 chr6 148450059 148450130 -33965112 + C-rich Low_complexity Low_complexity 1 71 0 472 193 0 0 chr6 148550258 148550341 -33864901 + FRAM SINE Alu 74 156 -20 239 158 0 0 chr6 148550585 148550623 -33864619 - MER5C DNA MER1_type -1 323 286 200 283 202 10 chr6 148550660 148550759 -33864483 - MER5C DNA MER1_type -204 120 3 2375 86 10 3 chr6 148551210 148551513 -33863729 - AluSx SINE Alu -7 305 1 182 37 37 0 chr6 148551994 148552021 -33863221 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 523 194 118 82 chr6 148553326 148553412 -33861830 - MER45A DNA AcHobo -1404 177 95 2187 73 45 3 chr6 148553412 148553698 -33861544 + AluSx SINE Alu 1 298 -14 523 194 118 82 chr6 148553698 148553781 -33861461 - MER45A DNA AcHobo -1486 95 2 408 288 215 5 chr6 148554607 148554798 -33860444 + MIR SINE MIR 20 250 -12 2039 132 7 0 chr6 148555008 148555324 -33859918 - AluSx SINE Alu 0 318 1 186 71 0 0 chr6 148558066 148558094 -33857148 + (TC)n Simple_repeat Simple_repeat 1 28 0 2470 68 3 0 chr6 148559179 148559487 -33855755 + AluY SINE Alu 1 309 -2 2285 90 0 3 chr6 148560687 148560976 -33854266 - AluSq SINE Alu -24 289 2 269 313 71 10 chr6 148561102 148561201 -33854041 + L2 LINE L2 3138 3242 -30 25 0 0 0 chr6 148562332 148562357 -33852885 + AT_rich Low_complexity Low_complexity 1 25 0 2249 122 0 0 chr6 148564158 148564469 -33850773 - AluSx SINE Alu 0 312 2 402 273 55 8 chr6 148564654 148564782 -33850460 - MIR SINE MIR -44 218 85 180 111 0 0 chr6 148564888 148564915 -33850327 + (A)n Simple_repeat Simple_repeat 1 27 0 291 277 10 10 chr6 148565364 148565465 -33849777 - MIR SINE MIR -115 147 47 2105 129 7 0 chr6 148565465 148565767 -33849475 - AluSx SINE Alu -8 304 1 261 0 0 0 chr6 148565774 148565803 -33849439 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2045 133 7 3 chr6 148565807 148566107 -33849135 - AluJo SINE Alu -11 301 1 652 284 140 56 chr6 148567057 148567542 -33847700 - MLT1L LTR MaLR 0 615 90 188 246 71 111 chr6 148567586 148567712 -33847530 + MIR3 SINE MIR 63 183 -25 2380 83 0 3 chr6 148568150 148568452 -33846790 - AluY SINE Alu -10 301 1 335 262 49 24 chr6 148568459 148568623 -33846619 + Charlie7 DNA MER1_type 2429 2596 -16 180 182 0 0 chr6 148570308 148570352 -33844890 + A-rich Low_complexity Low_complexity 2 45 0 29 0 0 0 chr6 148570541 148570570 -33844672 + AT_rich Low_complexity Low_complexity 1 29 0 2379 88 0 10 chr6 148570744 148570878 -33844364 + AluSg SINE Alu 1 135 -175 2451 70 0 3 chr6 148570878 148571178 -33844064 + AluY SINE Alu 1 299 -12 2379 88 0 10 chr6 148571178 148571351 -33843891 + AluSg SINE Alu 135 305 -5 207 0 0 0 chr6 148572194 148572217 -33843025 + (TAA)n Simple_repeat Simple_repeat 2 24 0 296 291 99 10 chr6 148572980 148573149 -33842093 - MIR SINE MIR 0 262 31 2446 60 3 3 chr6 148573539 148573838 -33841404 - AluY SINE Alu -12 299 1 713 284 32 44 chr6 148574175 148574322 -33840920 + MIR SINE MIR 13 158 -104 1705 151 0 30 chr6 148574322 148574648 -33840594 + AluJb SINE Alu 1 317 0 713 284 32 44 chr6 148574648 148574749 -33840493 + MIR SINE MIR 158 259 -3 3668 151 41 46 chr6 148575582 148576282 -33838960 - L1MC1 LINE L1 0 6333 5637 358 208 69 58 chr6 148576350 148576523 -33838719 - L2 LINE L2 -19 3294 3120 2097 173 13 31 chr6 148576785 148577166 -33838076 - MLT1A2 LTR MaLR 0 374 1 2247 80 47 3 chr6 148577607 148577906 -33837336 + AluSp SINE Alu 1 312 -1 1444 183 42 3 chr6 148579105 148579390 -33835852 + AluJb SINE Alu 1 296 -16 779 80 9 0 chr6 148579403 148579515 -33835727 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 2441 73 0 0 chr6 148581367 148581670 -33833572 + AluY SINE Alu 5 307 -4 183 129 0 0 chr6 148581680 148581711 -33833531 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 183 340 184 0 chr6 148582358 148582461 -33832781 + MIR SINE MIR 26 147 -61 204 125 0 0 chr6 148583160 148583192 -33832050 + (A)n Simple_repeat Simple_repeat 1 32 0 283 333 0 0 chr6 148584530 148584614 -33830628 - L2 LINE L2 0 3313 3230 190 253 117 84 chr6 148584630 148584784 -33830458 - MIR SINE MIR 0 262 104 262 261 0 0 chr6 148584994 148585063 -33830179 + (TG)n Simple_repeat Simple_repeat 1 69 0 2150 84 32 7 chr6 148585063 148585390 -33829852 - AluSx SINE Alu 0 312 1 234 0 0 0 chr6 148585405 148585431 -33829811 + (TG)n Simple_repeat Simple_repeat 1 26 0 898 250 68 36 chr6 148585738 148586046 -33829196 - MARNA DNA Mariner -6 580 263 219 294 64 46 chr6 148586057 148586166 -33829076 - MIR SINE MIR -21 241 131 371 311 113 18 chr6 148586172 148586500 -33828742 - L1ME4a LINE L1 -9 6112 5754 330 295 9 18 chr6 148586502 148586614 -33828628 - L1ME4a LINE L1 -410 5711 5601 2533 68 0 3 chr6 148587353 148587662 -33827580 + AluSc SINE Alu 1 308 -1 514 275 162 50 chr6 148588197 148588418 -33826824 + L2 LINE L2 2510 2705 -608 2256 102 7 3 chr6 148588418 148588721 -33826521 - AluSx SINE Alu -8 304 1 514 275 162 50 chr6 148588721 148589221 -33826021 + L2 LINE L2 2705 3313 0 2332 86 0 7 chr6 148589584 148589887 -33825355 + AluY SINE Alu 1 301 -10 2239 95 17 0 chr6 148589906 148590201 -33825041 - AluSc SINE Alu -9 300 1 1922 117 0 18 chr6 148590256 148590530 -33824712 + AluJb SINE Alu 44 312 0 189 0 0 0 chr6 148592311 148592332 -33822910 + (A)n Simple_repeat Simple_repeat 1 21 0 2150 85 0 7 chr6 148592332 148592614 -33822628 - AluY SINE Alu -31 280 1 2372 102 0 0 chr6 148592618 148592921 -33822321 - AluSq SINE Alu -10 303 1 494 200 0 0 chr6 148593763 148593863 -33821379 - MER53 DNA DNA -89 100 1 267 269 93 39 chr6 148593865 148594047 -33821195 - L2 LINE L2 -1375 1939 1748 1432 271 88 39 chr6 148594371 148594581 -33820661 + L1ME3A LINE L1 5188 5386 -784 387 0 0 0 chr6 148594581 148594624 -33820618 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2208 80 0 7 chr6 148594627 148594915 -33820327 - AluY SINE Alu -24 287 2 1432 271 88 39 chr6 148594915 148595440 -33819802 + L1ME3A LINE L1 5387 5964 -206 211 203 0 47 chr6 148595446 148595510 -33819732 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 21 71 0 0 chr6 148595694 148595736 -33819506 + AT_rich Low_complexity Low_complexity 1 42 0 1551 181 120 0 chr6 148597187 148597453 -33817789 + AluJo SINE Alu 1 298 -4 260 352 29 0 chr6 148597724 148597829 -33817413 + MIR SINE MIR 108 215 -47 454 137 0 0 chr6 148599030 148599103 -33816139 - L1MA3 LINE L1 0 6305 6233 2383 93 0 0 chr6 148599141 148599443 -33815799 + AluSg SINE Alu 1 302 -8 587 336 56 21 chr6 148599595 148599881 -33815361 - L2 LINE L2 -465 2849 2554 827 288 41 19 chr6 148599888 148600155 -33815087 - LTR16A LTR ERVL -5 445 173 707 71 10 20 chr6 148600411 148600510 -33814732 + MER4A LTR ERV1 1 98 -566 1695 116 19 90 chr6 148600510 148600882 -33814360 + MER4A LTR ERV1 261 664 0 4197 267 126 46 chr6 148601006 148601103 -33814139 + L1MC4a LINE L1 4175 4263 -3545 2239 92 3 30 chr6 148601103 148601408 -33813834 + AluSq SINE Alu 1 297 -16 4197 267 126 46 chr6 148601408 148601562 -33813680 + L1MC4a LINE L1 4263 4403 -3405 213 39 0 0 chr6 148601562 148601588 -33813654 + (TA)n Simple_repeat Simple_repeat 2 27 0 4197 267 126 46 chr6 148601588 148601607 -33813635 + L1MC4a LINE L1 4403 4419 -3389 2231 98 0 3 chr6 148601607 148601924 -33813318 - AluSq SINE Alu 0 316 1 4197 267 126 46 chr6 148601924 148602143 -33813099 + L1MC4a LINE L1 4419 4619 -3189 2275 66 13 17 chr6 148602143 148602445 -33812797 + AluY SINE Alu 1 301 -10 4197 267 126 46 chr6 148602445 148602678 -33812564 + L1MC4a LINE L1 4619 4832 -2976 2507 54 0 3 chr6 148602678 148602974 -33812268 + AluY SINE Alu 1 295 -16 4197 267 126 46 chr6 148602974 148603874 -33811368 + L1MC4a LINE L1 4832 5659 -2149 2268 106 0 6 chr6 148603874 148604185 -33811057 - AluSg SINE Alu -1 309 1 4197 267 126 46 chr6 148604185 148604554 -33810688 + L1MC4a LINE L1 5659 5997 -1811 934 176 106 15 chr6 148604554 148604753 -33810489 + MER20 DNA MER1_type 2 218 -1 4197 267 126 46 chr6 148604753 148604804 -33810438 + L1MC4a LINE L1 5997 6043 -1765 2363 88 0 3 chr6 148604804 148605101 -33810141 - AluY SINE Alu -15 296 1 4197 267 126 46 chr6 148605101 148606024 -33809218 + L1MC4a LINE L1 6043 7388 -420 744 244 141 26 chr6 148606174 148606486 -33808756 + L1MC4 LINE L1 7694 8041 -1 2008 211 68 102 chr6 148606519 148607488 -33807754 + L1MC5 LINE L1 6991 7926 -35 519 210 159 45 chr6 148607651 148607808 -33807434 + MIR SINE MIR 23 197 -65 1905 148 3 43 chr6 148608538 148608862 -33806380 + AluSx SINE Alu 1 311 -1 563 285 33 80 chr6 148609104 148609406 -33805836 - LTR16A1 LTR ERVL -12 445 158 2033 135 13 0 chr6 148610067 148610371 -33804871 + AluSx SINE Alu 1 308 -4 396 222 0 0 chr6 148611194 148611275 -33803967 + L1MC5 LINE L1 7299 7379 -582 2476 68 0 0 chr6 148611293 148611589 -33803653 + AluY SINE Alu 1 296 -15 1042 208 25 0 chr6 148611589 148611786 -33803456 - MER63B DNA MER1_type -234 202 1 513 203 34 75 chr6 148611795 148611997 -33803245 - MER69 DNA AcHobo -2273 253 14 660 285 151 7 chr6 148612002 148612286 -33802956 + L2 LINE L2 2988 3312 -1 2654 170 85 97 chr6 148612367 148612645 -33802597 - MER82 DNA MER2_type -1 652 372 2321 91 0 3 chr6 148612645 148612943 -33802299 - AluSc SINE Alu -12 297 1 2654 170 85 97 chr6 148612943 148613185 -33802057 - MER82 DNA MER2_type -281 372 129 1688 80 181 106 chr6 148613185 148613294 -33801948 + THE1C LTR MaLR 1 100 -275 2274 99 0 39 chr6 148613294 148613461 -33801781 - AluSx SINE Alu -12 300 149 2184 115 3 0 chr6 148613461 148613757 -33801485 - AluSp SINE Alu -16 297 1 2274 99 0 39 chr6 148613757 148613901 -33801341 - AluSx SINE Alu -163 149 1 1688 80 181 106 chr6 148613901 148614093 -33801149 + THE1C LTR MaLR 100 276 -99 2378 62 0 3 chr6 148614093 148614384 -33800858 - AluY SINE Alu -21 290 1 2235 100 0 3 chr6 148614384 148614685 -33800557 - AluY SINE Alu -11 300 1 1688 80 181 106 chr6 148614685 148614730 -33800512 + THE1C LTR MaLR 275 375 0 2654 170 85 97 chr6 148614730 148614867 -33800375 - MER82 DNA MER2_type -524 129 2 23 33 0 0 chr6 148615404 148615434 -33799808 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr6 148615633 148615659 -33799583 + (T)n Simple_repeat Simple_repeat 1 26 0 2807 105 36 3 chr6 148615754 148616144 -33799098 + MER57A LTR ERV1 1 403 0 1753 160 20 20 chr6 148616605 148616905 -33798337 - AluJo SINE Alu -12 300 1 2456 73 0 3 chr6 148619269 148619570 -33795672 + AluY SINE Alu 1 300 -11 382 319 130 16 chr6 148619627 148619812 -33795430 - MIR SINE MIR -36 226 21 395 284 46 0 chr6 148619951 148620060 -33795182 + MIR SINE MIR 38 151 -111 428 274 20 20 chr6 148620087 148620233 -33795009 - LTR16A LTR ERVL -65 385 240 325 257 79 50 chr6 148620283 148620423 -33794819 - LTR16A1 LTR ERVL -313 144 1 1531 144 41 4 chr6 148621106 148621376 -33793866 + L1MA8 LINE L1 6011 6290 -1 2284 112 0 0 chr6 148621543 148621848 -33793394 + AluSg SINE Alu 1 305 -5 441 328 78 45 chr6 148622047 148622192 -33793050 - L2 LINE L2 -8 3305 3166 2315 90 13 3 chr6 148622192 148622492 -33792750 + AluSp SINE Alu 1 303 -10 441 328 78 45 chr6 148622492 148622703 -33792539 - L2 LINE L2 -147 3166 2937 2368 78 10 0 chr6 148622784 148623079 -33792163 - AluSp SINE Alu -15 298 1 2149 107 10 3 chr6 148625101 148625399 -33789843 + AluSg SINE Alu 1 300 -10 388 287 72 33 chr6 148625984 148626165 -33789077 - MIR3 SINE MIR -3 205 18 3088 207 9 64 chr6 148627132 148627442 -33787800 - MER82 DNA MER2_type 0 653 328 2304 98 0 3 chr6 148627442 148627739 -33787503 + AluSq SINE Alu 1 296 -17 3088 207 9 64 chr6 148627739 148627762 -33787480 - MER82 DNA MER2_type -325 328 305 1947 147 0 20 chr6 148627762 148628061 -33787181 + AluSx SINE Alu 9 301 -11 183 42 0 0 chr6 148628061 148628085 -33787157 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 3088 207 9 64 chr6 148628085 148628440 -33786802 - MER82 DNA MER2_type -346 307 1 200 247 247 21 chr6 148628499 148628689 -33786553 + L2 LINE L2 2443 2675 -639 382 323 29 86 chr6 148628838 148629117 -33786125 + L2 LINE L2 2919 3181 -91 1001 149 52 104 chr6 148629803 148630092 -33785150 - ORSL DNA AcHobo -1 274 1 266 0 29 0 chr6 148631437 148631471 -33783771 + (TAA)n Simple_repeat Simple_repeat 2 36 0 303 150 0 0 chr6 148631861 148631921 -33783321 + (A)n Simple_repeat Simple_repeat 1 60 0 26 0 0 0 chr6 148634338 148634364 -33780878 + AT_rich Low_complexity Low_complexity 1 26 0 2346 78 3 3 chr6 148634495 148634789 -33780453 - AluY SINE Alu -17 294 1 1390 155 21 21 chr6 148634823 148635062 -33780180 + AluJo SINE Alu 1 239 -73 610 105 0 0 chr6 148635063 148635139 -33780103 + AluSg/x SINE Alu 200 275 -35 198 71 0 0 chr6 148635143 148635171 -33780071 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1142 191 24 16 chr6 148635545 148635676 -33779566 - ORSL DNA AcHobo 0 275 140 2135 112 0 3 chr6 148635676 148635970 -33779272 - AluSg1 SINE Alu -16 293 1 1142 191 24 16 chr6 148635970 148636084 -33779158 - ORSL DNA AcHobo -135 140 28 734 132 124 0 chr6 148636084 148636205 -33779037 - MLT1D LTR MaLR -4 501 366 268 242 97 0 chr6 148638519 148638581 -33776661 + MER5A DNA MER1_type 9 76 -113 1220 150 109 105 chr6 148638581 148638640 -33776602 + AluJo SINE Alu 1 58 -254 2378 88 0 3 chr6 148638640 148638947 -33776295 - AluSq SINE Alu -6 307 2 1220 150 109 105 chr6 148638947 148638964 -33776278 + AluJo SINE Alu 58 73 -239 814 121 9 0 chr6 148638964 148639080 -33776162 - L1PB1 LINE L1 -2 6149 6033 1220 150 109 105 chr6 148639080 148639296 -33775946 + AluJo SINE Alu 73 295 -17 1837 141 13 45 chr6 148639594 148639907 -33775335 + AluSx SINE Alu 1 303 -9 279 0 0 0 chr6 148641122 148641153 -33774089 + (TG)n Simple_repeat Simple_repeat 2 32 0 2220 98 3 0 chr6 148641153 148641439 -33773803 - AluSp SINE Alu -26 287 1 230 300 11 44 chr6 148641898 148641988 -33773254 - L2 LINE L2 0 3272 3186 187 286 224 20 chr6 148642032 148642130 -33773112 - L2 LINE L2 -220 3052 2935 271 200 109 0 chr6 148642250 148642305 -33772937 + MER5A DNA MER1_type 12 72 -117 1257 101 0 0 chr6 148642312 148642480 -33772762 - AluSc SINE Alu 0 309 142 2262 91 19 3 chr6 148642490 148642797 -33772445 + AluSx SINE Alu 1 312 0 479 192 0 0 chr6 148642800 148642878 -33772364 + Tigger5 DNA MER2_type 1 78 -2245 263 288 0 0 chr6 148642881 148642947 -33772295 - Tigger5 DNA MER2_type -6 2317 2252 * 299 253 38 0 chr6 148642913 148642992 -33772250 + Tigger5 DNA MER2_type 2242 2323 0 2186 86 0 21 chr6 148643169 148643509 -33771733 + AluSx SINE Alu 1 334 0 238 97 0 0 chr6 148643582 148643613 -33771629 + U2 snRNA snRNA 1 31 -157 334 192 115 99 chr6 148644592 148644774 -33770468 + L1MC5 LINE L1 7741 7925 -36 288 0 0 0 chr6 148645614 148645646 -33769596 + (TTA)n Simple_repeat Simple_repeat 3 34 0 2002 103 7 17 chr6 148645649 148645939 -33769303 - AluSx SINE Alu -25 287 1 492 315 61 0 chr6 148645939 148646152 -33769090 - L2 LINE L2 -10 3303 3078 2004 134 10 3 chr6 148646937 148647235 -33768007 + AluSx SINE Alu 1 300 -12 681 299 24 19 chr6 148647671 148647882 -33767360 + MIR SINE MIR 2 213 -49 2240 101 0 13 chr6 148647964 148648271 -33766971 + AluSc SINE Alu 1 303 -6 349 373 24 8 chr6 148648330 148648456 -33766786 + L2 LINE L2 3140 3267 -5 2391 73 0 0 chr6 148650030 148650319 -33764923 + AluY SINE Alu 1 289 -22 228 35 0 0 chr6 148650321 148650350 -33764892 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 746 256 54 50 chr6 148650666 148650839 -33764403 + MIR SINE MIR 20 196 -66 2513 65 0 0 chr6 148650839 148651133 -33764109 + AluY SINE Alu 1 294 -17 746 256 54 50 chr6 148651133 148651201 -33764041 + MIR SINE MIR 196 262 0 245 258 135 92 chr6 148651680 148652222 -33763020 + L1M4 LINE L1 4080 4644 -1502 321 218 103 11 chr6 148652311 148652398 -33762844 + L1ME4a LINE L1 5946 6040 -81 2403 80 0 3 chr6 148652451 148652751 -33762491 - AluSq SINE Alu -14 299 1 22 35 0 0 chr6 148653022 148653051 -33762191 + AT_rich Low_complexity Low_complexity 1 29 0 2353 93 3 0 chr6 148653384 148653684 -33761558 + AluSx SINE Alu 1 301 -11 2185 117 7 0 chr6 148655534 148655834 -33759408 - AluSx SINE Alu -10 302 1 477 309 85 27 chr6 148655864 148656087 -33759155 + MIR SINE MIR 19 254 -8 25 0 0 0 chr6 148656179 148656204 -33759038 + AT_rich Low_complexity Low_complexity 1 25 0 35 0 0 0 chr6 148656630 148656665 -33758577 + AT_rich Low_complexity Low_complexity 1 35 0 295 276 58 40 chr6 148656848 148657073 -33758169 + HAL1 LINE L1 1423 1651 -856 273 267 224 46 chr6 148657444 148657747 -33757495 + L1MC4a LINE L1 5616 5972 -1836 405 280 177 6 chr6 148658504 148658679 -33756563 + MIR SINE MIR 58 262 0 321 296 175 0 chr6 148658695 148658884 -33756358 + MIR SINE MIR 40 261 -1 222 322 11 11 chr6 148658963 148659050 -33756192 - L2 LINE L2 -251 3021 2935 183 204 0 0 chr6 148659063 148659107 -33756135 + (TAA)n Simple_repeat Simple_repeat 1 44 0 607 282 147 38 chr6 148659128 148659632 -33755610 - L2 LINE L2 -1006 2308 1750 1884 104 0 0 chr6 148660441 148660691 -33754551 + AluSg SINE Alu 61 310 0 325 239 55 55 chr6 148660702 148660811 -33754431 + MIR3 SINE MIR 95 203 -5 2450 83 3 0 chr6 148662051 148662353 -33752889 - AluSp SINE Alu -9 304 2 2418 65 0 7 chr6 148664613 148664907 -33750335 - AluSc SINE Alu -17 292 1 2580 57 3 0 chr6 148665006 148665305 -33749937 + AluY SINE Alu 1 300 -11 352 253 6 3 chr6 148665571 148665670 -33749572 + MER63 DNA MER1_type 44 741 -321 617 186 13 58 chr6 148666072 148666148 -33749094 + MIR SINE MIR 83 150 -112 620 204 41 17 chr6 148666148 148666320 -33748922 - MER104 DNA MER2_type -4 176 1 617 186 13 58 chr6 148666320 148666399 -33748843 + MIR SINE MIR 150 231 -31 1274 304 67 42 chr6 148667943 148668173 -33747069 - MLT2F LTR ERVL 0 663 440 2415 97 0 0 chr6 148668173 148668481 -33746761 + AluSx SINE Alu 1 308 -4 1274 304 67 42 chr6 148668481 148668889 -33746353 - MLT2F LTR ERVL -223 440 9 216 111 0 0 chr6 148669671 148669707 -33745535 + (CAT)n Simple_repeat Simple_repeat 1 36 0 21 26 0 26 chr6 148670485 148670502 -33744740 + AT_rich Low_complexity Low_complexity 1 17 -21 820 107 23 30 chr6 148670502 148670633 -33744609 + FLAM_C SINE Alu 1 130 -3 21 26 0 26 chr6 148670633 148670654 -33744588 + AT_rich Low_complexity Low_complexity 17 38 0 25 31 0 0 chr6 148670914 148670946 -33744296 + AT_rich Low_complexity Low_complexity 1 32 0 612 291 20 41 chr6 148671160 148671404 -33743838 - MIR SINE MIR -2 260 22 203 346 62 0 chr6 148672879 148673009 -33742233 - MIR3 SINE MIR -7 201 64 21 0 0 0 chr6 148673369 148673390 -33741852 + AT_rich Low_complexity Low_complexity 1 21 0 2227 110 3 3 chr6 148673393 148673702 -33741540 + AluSc SINE Alu 1 309 0 1943 147 27 59 chr6 148674740 148675114 -33740128 - MLT1A1 LTR MaLR -3 362 1 1028 135 0 0 chr6 148676135 148676283 -33738959 - AluJb SINE Alu 0 312 165 2002 147 13 7 chr6 148677604 148677733 -33737509 + AluJb SINE Alu 1 128 -184 180 0 0 0 chr6 148677733 148677753 -33737489 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2002 147 13 7 chr6 148677753 148677923 -33737319 + AluJb SINE Alu 128 302 -10 187 302 70 0 chr6 148677955 148678041 -33737201 + MIR SINE MIR 117 208 -54 2029 97 4 11 chr6 148678176 148678445 -33736797 + AluSq SINE Alu 39 305 -8 206 283 53 59 chr6 148681423 148681575 -33733667 - MIR SINE MIR -65 197 47 2320 85 3 47 chr6 148682552 148682871 -33732371 + AluSg SINE Alu 1 305 -5 533 249 15 41 chr6 148683312 148683509 -33731733 + L2 LINE L2 3112 3303 -10 388 240 88 32 chr6 148684165 148684290 -33730952 - MIR3 SINE MIR -11 197 66 264 187 80 53 chr6 148684975 148685050 -33730192 - MIR3 SINE MIR -45 163 87 1742 87 0 9 chr6 148735160 148735391 -33679851 + AluSg/x SINE Alu 83 311 -1 2093 278 82 41 chr6 148735392 148736291 -33678951 - L1MC4a LINE L1 -747 5399 4538 2481 61 0 3 chr6 148736291 148736587 -33678655 - AluY SINE Alu -16 295 1 2093 278 82 41 chr6 148736587 148736820 -33678422 - L1MC4a LINE L1 -1608 4538 4316 2275 66 13 17 chr6 148736820 148737122 -33678120 - AluY SINE Alu -10 301 1 2093 278 82 41 chr6 148737122 148737341 -33677901 - L1MC4a LINE L1 -1830 4316 4107 2220 101 0 3 chr6 148737341 148737654 -33677588 + AluSq SINE Alu 1 312 0 2093 278 82 41 chr6 148737654 148737675 -33677567 - L1MC4a LINE L1 -2039 4107 4088 195 42 0 0 chr6 148737675 148737699 -33677543 + (TA)n Simple_repeat Simple_repeat 2 25 0 2093 278 82 41 chr6 148737699 148737853 -33677389 - L1MC4a LINE L1 -2058 4088 4266 2261 88 3 29 chr6 148737853 148738159 -33677083 - AluSq SINE Alu -15 298 1 2093 278 82 41 chr6 148738159 148738256 -33676986 - L1MC4a LINE L1 -1879 4267 4175 1695 116 19 90 chr6 148738380 148738752 -33676490 - MER4A LTR ERV1 0 664 261 707 71 10 20 chr6 148738752 148738851 -33676391 - MER4A LTR ERV1 -566 98 1 819 288 41 19 chr6 148739107 148739374 -33675868 + LTR16A LTR ERVL 173 445 -5 587 336 56 21 chr6 148739381 148739667 -33675575 + L2 LINE L2 2554 2849 -465 2357 96 0 0 chr6 148739819 148740121 -33675121 - AluSg SINE Alu -8 302 1 454 137 0 0 chr6 148740159 148740232 -33675010 + L1MA3 LINE L1 6233 6305 0 260 352 29 0 chr6 148741429 148741534 -33673708 - MIR SINE MIR -47 215 108 1551 181 120 0 chr6 148741805 148742071 -33673171 - AluJo SINE Alu -4 298 1 21 71 0 0 chr6 148743522 148743564 -33671678 + AT_rich Low_complexity Low_complexity 1 42 0 211 203 0 47 chr6 148743748 148743812 -33671430 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 1432 271 88 39 chr6 148743818 148744343 -33670899 - L1ME3A LINE L1 -206 5964 5466 2208 80 0 7 chr6 148744343 148744631 -33670611 + AluY SINE Alu 2 287 -24 387 0 0 0 chr6 148744634 148744677 -33670565 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1432 271 88 39 chr6 148744677 148744887 -33670355 - L1ME3A LINE L1 -705 5465 5188 267 269 93 39 chr6 148745211 148745393 -33669849 + L2 LINE L2 1748 1939 -1375 494 200 0 0 chr6 148745395 148745495 -33669747 + MER53 DNA DNA 1 100 -89 2373 102 0 0 chr6 148746338 148746642 -33668600 + AluSq SINE Alu 1 304 -9 2103 89 0 7 chr6 148746646 148746928 -33668314 + AluY SINE Alu 1 280 -31 2800 7 16 0 chr6 148748738 148749044 -33666198 - AluYa5 SINE Alu 0 311 1 261 0 0 0 chr6 148749138 148749167 -33666075 + (T)n Simple_repeat Simple_repeat 1 29 0 330 295 9 18 chr6 148749785 148749897 -33665345 + L1ME4a LINE L1 5601 5711 -410 386 311 113 18 chr6 148749899 148750227 -33665015 + L1ME4a LINE L1 5754 6112 -9 219 294 64 46 chr6 148750233 148750342 -33664900 + MIR SINE MIR 131 241 -21 898 250 68 36 chr6 148750353 148750661 -33664581 + MARNA DNA Mariner 263 580 -6 252 0 0 0 chr6 148750968 148750996 -33664246 + (CA)n Simple_repeat Simple_repeat 1 28 0 2177 81 32 7 chr6 148751011 148751334 -33663908 + AluSx SINE Alu 1 312 0 262 261 0 0 chr6 148751334 148751403 -33663839 + (CA)n Simple_repeat Simple_repeat 1 69 0 190 253 117 84 chr6 148751613 148751767 -33663475 + MIR SINE MIR 104 262 0 283 333 0 0 chr6 148751783 148751867 -33663375 + L2 LINE L2 3230 3313 0 204 125 0 0 chr6 148753205 148753237 -33662005 + (T)n Simple_repeat Simple_repeat 1 32 0 183 340 184 0 chr6 148753936 148754039 -33661203 - MIR SINE MIR -61 147 26 204 97 0 0 chr6 148754683 148754714 -33660528 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 2442 70 0 0 chr6 148754724 148755023 -33660219 - AluY SINE Alu -8 303 5 815 78 9 0 chr6 148756903 148757019 -33658223 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 189 0 0 0 chr6 148757019 148757040 -33658202 + (TC)n Simple_repeat Simple_repeat 1 21 0 1574 178 43 4 chr6 148757040 148757321 -33657921 - AluJb SINE Alu -10 292 1 2247 80 47 3 chr6 148758520 148758819 -33656423 - AluSp SINE Alu -1 312 1 2097 173 13 31 chr6 148759260 148759641 -33655601 + MLT1A2 LTR MaLR 1 374 0 358 208 69 58 chr6 148759903 148760076 -33655166 + L2 LINE L2 3120 3294 -19 3668 151 41 46 chr6 148760144 148760844 -33654398 + L1MC1 LINE L1 5637 6333 0 713 284 32 44 chr6 148761677 148761778 -33653464 - MIR SINE MIR -3 259 158 1704 151 0 30 chr6 148761778 148762104 -33653138 - AluJb SINE Alu 0 317 1 713 284 32 44 chr6 148762104 148762251 -33652991 - MIR SINE MIR -104 158 13 2446 60 3 3 chr6 148762588 148762887 -33652355 + AluY SINE Alu 1 299 -12 296 291 99 10 chr6 148763277 148763446 -33651796 + MIR SINE MIR 31 262 0 207 0 0 0 chr6 148764209 148764232 -33651010 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2371 88 0 10 chr6 148765075 148765247 -33649995 - AluSg SINE Alu -6 304 135 2451 70 0 3 chr6 148765247 148765547 -33649695 - AluY SINE Alu -12 299 1 2371 88 0 10 chr6 148765547 148765681 -33649561 - AluSg SINE Alu -175 135 1 29 0 0 0 chr6 148765855 148765884 -33649358 + AT_rich Low_complexity Low_complexity 1 29 0 180 182 0 0 chr6 148766073 148766117 -33649125 + T-rich Low_complexity Low_complexity 2 45 0 335 262 49 24 chr6 148767802 148767966 -33647276 - Charlie7 DNA MER1_type -16 2596 2429 2365 86 0 3 chr6 148767973 148768275 -33646967 + AluY SINE Alu 1 301 -10 188 246 71 111 chr6 148768713 148768839 -33646403 - MIR3 SINE MIR -25 183 63 652 284 140 56 chr6 148768883 148769368 -33645874 + MLT1L LTR MaLR 90 615 0 2045 133 7 3 chr6 148770318 148770618 -33644624 + AluJo SINE Alu 1 301 -11 261 0 0 0 chr6 148770622 148770651 -33644591 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2105 129 7 0 chr6 148770658 148770960 -33644282 + AluSx SINE Alu 1 304 -8 291 277 10 10 chr6 148770960 148771061 -33644181 + MIR SINE MIR 47 147 -115 180 111 0 0 chr6 148771510 148771537 -33643705 + (T)n Simple_repeat Simple_repeat 1 27 0 402 273 55 8 chr6 148771643 148771771 -33643471 + MIR SINE MIR 85 218 -44 2249 122 0 0 chr6 148771956 148772267 -33642975 + AluSx SINE Alu 2 312 0 25 0 0 0 chr6 148774068 148774093 -33641149 + AT_rich Low_complexity Low_complexity 1 25 0 269 313 71 10 chr6 148775224 148775323 -33639919 - L2 LINE L2 -30 3242 3138 2285 90 0 3 chr6 148775449 148775738 -33639504 + AluSq SINE Alu 2 289 -24 2470 68 3 0 chr6 148776938 148777246 -33637996 - AluY SINE Alu -2 309 1 186 71 0 0 chr6 148778331 148778359 -33636883 + (GA)n Simple_repeat Simple_repeat 1 28 0 2032 132 7 0 chr6 148781101 148781417 -33633825 + AluSx SINE Alu 1 318 0 399 267 236 26 chr6 148781627 148781818 -33633424 - MIR SINE MIR -12 250 20 588 194 118 82 chr6 148782644 148782727 -33632515 + MER45A DNA AcHobo 2 81 -1500 2195 73 45 3 chr6 148782727 148783013 -33632229 - AluSx SINE Alu -14 298 1 588 194 118 82 chr6 148783013 148783099 -33632143 + MER45A DNA AcHobo 81 177 -1 182 37 37 0 chr6 148784404 148784431 -33630811 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2377 86 10 3 chr6 148784913 148785216 -33630026 + AluSx SINE Alu 1 305 -7 194 283 202 10 chr6 148785667 148785766 -33629476 + MER5C DNA MER1_type 3 120 -204 254 132 0 0 chr6 148785803 148785841 -33629401 + MER5C DNA MER1_type 286 323 -1 1786 164 3 10 chr6 148786085 148786377 -33628865 - AluJo SINE Alu -20 292 3 1656 213 155 27 chr6 148786451 148786897 -33628345 + MLT1D LTR MaLR 3 505 0 2191 105 7 0 chr6 148787235 148787529 -33627713 + AluSg SINE Alu 1 296 -14 2051 135 0 0 chr6 148788196 148788484 -33626758 - AluSx SINE Alu -24 288 1 1041 219 9 23 chr6 148789226 148789445 -33625797 - MER58A DNA MER1_type 0 224 9 2149 124 20 0 chr6 148789919 148790218 -33625024 - AluSx SINE Alu -7 305 1 409 95 126 147 chr6 148790598 148790628 -33624614 - FLAM_A SINE Alu -178 133 104 2666 10 0 0 chr6 148790628 148790974 -33624268 + AluYb8 SINE Alu 1 346 0 409 95 126 147 chr6 148790974 148791037 -33624205 - FLAM_A SINE Alu -207 104 41 1128 64 29 0 chr6 148791075 148791215 -33624027 - L1MA3 LINE L1 -1 6304 6161 2931 131 32 11 chr6 148791390 148791749 -33623493 - L1 LINE L1 -1365 6200 5825 2351 105 0 0 chr6 148791749 148792054 -33623188 - AluSp SINE Alu -8 305 1 2931 131 32 11 chr6 148792054 148792222 -33623020 - L1 LINE L1 -1740 5825 5662 * 6090 80 17 0 chr6 148792219 148793030 -33622212 - L1PA13 LINE L1 0 6163 5339 1268 129 91 10 chr6 148793043 148793252 -33621990 - MER30 DNA MER1_type 0 230 5 16097 157 18 33 chr6 148793254 148794463 -33620779 - L1 LINE L1 -1900 5665 4439 2289 83 7 20 chr6 148794463 148794764 -33620478 + AluY SINE Alu 1 297 -14 16097 157 18 33 chr6 148794764 148795114 -33620128 - L1 LINE L1 -3126 4439 4085 555 47 47 0 chr6 148795114 148795200 -33620042 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 16097 157 18 33 chr6 148795200 148795693 -33619549 - L1 LINE L1 -3480 4085 3586 2385 88 0 0 chr6 148795693 148795999 -33619243 - AluY SINE Alu -5 306 1 16097 157 18 33 chr6 148795999 148798158 -33617084 - L1 LINE L1 -3979 3586 1396 2287 139 150 5 chr6 148798158 148798532 -33616710 - MSTA LTR MaLR 0 428 1 16097 157 18 33 chr6 148798532 148798671 -33616571 - L1 LINE L1 -6169 1396 1256 2261 76 0 17 chr6 148798671 148798837 -33616405 - AluY SINE Alu -14 297 137 2479 63 0 0 chr6 148798837 148799139 -33616103 - AluY SINE Alu -9 302 1 2261 76 0 17 chr6 148799139 148799274 -33615968 - AluY SINE Alu -174 137 1 16097 157 18 33 chr6 148799274 148800360 -33614882 - L1 LINE L1 -6309 1256 135 2409 61 14 0 chr6 148800360 148800656 -33614586 - AluY SINE Alu -11 300 1 16097 157 18 33 chr6 148800656 148800769 -33614473 - L1 LINE L1 -7430 135 22 229 306 112 0 chr6 148801187 148801285 -33613957 - MIR SINE MIR -70 192 84 219 337 59 59 chr6 148801604 148801773 -33613469 + L3 LINE CR1 246 414 -1163 516 313 119 4 chr6 148801811 148802038 -33613204 - MIR SINE MIR -9 253 1 334 336 24 26 chr6 148802055 148802269 -33612973 + L3 LINE CR1 463 728 -849 256 288 12 50 chr6 148802384 148802464 -33612778 - MIR SINE MIR -55 153 77 450 349 144 15 chr6 148802491 148803089 -33612153 + L3 LINE CR1 726 1468 -109 183 226 191 48 chr6 148803188 148803272 -33611970 + L2 LINE L2 3202 3297 -16 287 355 50 8 chr6 148803398 148803519 -33611723 + L2 LINE L2 2919 3044 -269 2581 169 21 28 chr6 148803676 148803743 -33611499 + MLT1C LTR MaLR 1 67 -400 3571 110 12 80 chr6 148803743 148804128 -33611114 + MER1A DNA MER1_type 1 338 -2362 2371 54 34 3 chr6 148804128 148804423 -33610819 - AluY SINE Alu -7 304 1 3571 110 12 80 chr6 148804423 148804602 -33610640 + MER1A DNA MER1_type 338 527 0 2581 169 21 28 chr6 148804602 148805002 -33610240 + MLT1C LTR MaLR 67 465 -2 204 257 135 27 chr6 148805002 148805076 -33610166 + L2 LINE L2 3188 3269 -3 206 214 0 0 chr6 148805077 148805119 -33610123 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 2278 92 0 3 chr6 148805848 148806141 -33609101 + AluY SINE Alu 5 296 -15 4773 126 9 9 chr6 148806594 148807263 -33607979 - L1PA13 LINE L1 -1 6162 5491 2648 58 3 0 chr6 148807263 148807573 -33607669 - AluY SINE Alu 0 311 1 4773 126 9 9 chr6 148807573 148807596 -33607646 - L1PA13 LINE L1 -671 5492 5470 1896 194 16 38 chr6 148807726 148808093 -33607149 + MLT1A1 LTR MaLR 5 363 -2 279 266 43 21 chr6 148808223 148808317 -33606925 - MIR3 SINE MIR -1 207 112 197 312 32 32 chr6 148808445 148808538 -33606704 - MIR SINE MIR -93 115 23 521 214 30 46 chr6 148808859 148808960 -33606282 - MIR SINE MIR -14 248 148 2440 96 0 0 chr6 148808960 148809273 -33605969 - AluSp SINE Alu 0 313 1 521 214 30 46 chr6 148809273 148809302 -33605940 - MIR SINE MIR -114 148 120 390 357 16 8 chr6 148809317 148809443 -33605799 - L2 LINE L2 -5 3267 3141 459 275 78 12 chr6 148811654 148811821 -33603421 + MIR SINE MIR 37 214 -48 2066 103 7 11 chr6 148811825 148812168 -33603074 + AluSg SINE Alu 1 342 0 1622 124 101 0 chr6 148812684 148812979 -33602263 - AluSx SINE Alu 0 321 1 265 271 75 28 chr6 148813780 148813887 -33601355 + MIR SINE MIR 37 148 -114 313 211 0 14 chr6 148814533 148814604 -33600638 + L1MC4 LINE L1 6640 6709 -1333 1977 126 7 0 chr6 148814621 148814890 -33600352 - AluSx SINE Alu -41 271 1 476 301 30 30 chr6 148815092 148815258 -33599984 + MIR3 SINE MIR 42 207 -1 2382 91 3 7 chr6 148816516 148816824 -33598418 - AluSc SINE Alu -2 307 1 2267 143 67 5 chr6 148817108 148817528 -33597714 - Tigger2 DNA MER2_type 0 2718 2273 390 143 32 0 chr6 148817518 148817581 -33597661 - Tigger2 DNA MER2_type -2649 69 5 * 2159 128 3 0 chr6 148817663 148817967 -33597275 + AluSg SINE Alu 1 305 -5 2455 64 0 10 chr6 148819917 148820229 -33595013 - AluY SINE Alu -2 309 1 450 319 92 49 chr6 148824986 148825453 -33589789 - L2 LINE L2 0 3313 2827 559 221 21 0 chr6 148826615 148826726 -33588516 + MER3 DNA MER1_type 24 140 -22 2144 124 3 0 chr6 148826726 148827025 -33588217 - AluSg SINE Alu -10 300 1 559 221 21 0 chr6 148827025 148827053 -33588189 + MER3 DNA MER1_type 140 166 -43 1591 176 3 67 chr6 148827069 148827381 -33587861 - AluJb SINE Alu -20 292 1 1861 127 60 0 chr6 148828463 148828589 -33586653 + AluSq SINE Alu 1 118 -195 257 0 30 0 chr6 148828589 148828622 -33586620 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1861 127 60 0 chr6 148828622 148828779 -33586463 + AluSq SINE Alu 118 301 -12 30 69 0 0 chr6 148831338 148831396 -33583846 + AT_rich Low_complexity Low_complexity 1 58 0 2504 81 0 0 chr6 148831689 148831999 -33583243 + AluY SINE Alu 1 310 -1 211 274 0 0 chr6 148832457 148832508 -33582734 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 281 345 101 14 chr6 148832508 148832656 -33582586 - L2 LINE L2 -1 3271 3111 2300 96 3 3 chr6 148832775 148833068 -33582174 - AluSq SINE Alu -20 293 1 28 48 0 0 chr6 148833591 148833633 -33581609 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr6 148834572 148834602 -33580640 + AT_rich Low_complexity Low_complexity 1 30 0 2150 100 7 0 chr6 148834636 148834944 -33580298 + AluSx SINE Alu 1 310 0 200 376 143 41 chr6 148835965 148836406 -33578836 - L2 LINE L2 -1 3312 2827 1435 231 52 44 chr6 148836446 148836936 -33578306 - MLT1F LTR MaLR -6 536 102 2343 97 0 3 chr6 148836936 148837234 -33578008 + AluSq SINE Alu 1 297 -16 1435 231 52 44 chr6 148837234 148837335 -33577907 - MLT1F LTR MaLR -440 102 3 809 333 94 40 chr6 148837335 148837909 -33577333 - L2 LINE L2 -562 2752 2148 325 238 0 0 chr6 148837982 148838062 -33577180 + MLT1I LTR MaLR 64 143 -266 2312 114 0 0 chr6 148838378 148838686 -33576556 - AluSx SINE Alu -4 308 1 2298 112 0 0 chr6 148838883 148839187 -33576055 - AluSc SINE Alu -3 306 3 315 0 0 0 chr6 148840669 148840704 -33574538 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr6 148841051 148841072 -33574170 + AT_rich Low_complexity Low_complexity 1 21 0 529 324 60 36 chr6 148841699 148841949 -33573293 + MIR SINE MIR 1 256 -6 1679 124 37 4 chr6 148841968 148842210 -33573032 + AluSc SINE Alu 1 250 -59 213 39 0 0 chr6 148842210 148842236 -33573006 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 392 354 23 11 chr6 148843812 148843987 -33571255 - L3 LINE CR1 -1 1576 1400 857 289 9 4 chr6 148844061 148844289 -33570953 - MIR SINE MIR -20 242 14 785 126 0 0 chr6 148844741 148844860 -33570382 + MLT1A1 LTR MaLR 243 361 -4 2665 256 77 38 chr6 148844865 148845793 -33569449 - L1MEc LINE L1 -1856 4359 3468 2143 88 22 4 chr6 148845793 148846097 -33569145 - AluSc SINE Alu 0 309 1 2665 256 77 38 chr6 148846097 148846323 -33568919 - L1MEc LINE L1 -2747 3468 3252 740 274 42 0 chr6 148846323 148846538 -33568704 - MER58A DNA MER1_type 0 224 1 2665 256 77 38 chr6 148846538 148846721 -33568521 - L1MEc LINE L1 -2963 3252 2968 1361 215 50 30 chr6 148847912 148848350 -33566892 - L1MEc LINE L1 -3225 2990 2544 6001 152 10 90 chr6 148848370 148850372 -33564870 - L1PB1 LINE L1 -1 6150 4287 869 94 16 0 chr6 148850372 148850499 -33564743 - AluSc SINE Alu -8 301 173 6001 152 10 90 chr6 148850499 148851021 -33564221 - L1PB1 LINE L1 -1864 4287 3725 513 292 77 16 chr6 148851028 148851195 -33564047 - L1MEc LINE L1 -5044 1352 1197 2307 97 23 0 chr6 148851195 148851494 -33563748 - AluY SINE Alu -5 306 1 2210 107 7 7 chr6 148851494 148851793 -33563449 - AluSq SINE Alu -14 299 1 513 292 77 16 chr6 148851793 148851936 -33563306 - L1MEc LINE L1 -5198 1198 1022 2604 245 48 29 chr6 148851972 148852779 -33562463 - L1MEc LINE L1 -5451 945 155 2305 54 40 3 chr6 148852779 148853075 -33562167 + AluY SINE Alu 2 308 -3 2604 245 48 29 chr6 148853075 148853104 -33562138 - L1MEc LINE L1 -6241 155 128 216 0 0 0 chr6 148853104 148853128 -33562114 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2604 245 48 29 chr6 148853128 148853184 -33562058 - L1MEc LINE L1 -6268 128 35 220 333 121 0 chr6 148853209 148853308 -33561934 - L3 LINE CR1 -436 1141 1031 1292 83 6 0 chr6 148853325 148853493 -33561749 - AluY SINE Alu -10 301 133 2752 16 0 3 chr6 148853493 148853800 -33561442 - AluY SINE Alu -3 308 3 2057 118 29 0 chr6 148854014 148854316 -33560926 - AluSx SINE Alu 0 310 1 2471 78 0 3 chr6 148854356 148854665 -33560577 - AluY SINE Alu -3 308 1 2291 108 3 0 chr6 148855481 148855786 -33559456 - AluSp SINE Alu -7 306 1 639 315 24 36 chr6 148856991 148857242 -33558000 + MIR SINE MIR 8 255 -7 195 80 80 0 chr6 148857576 148857626 -33557616 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 414 53 0 0 chr6 148858830 148858887 -33556355 + (TG)n Simple_repeat Simple_repeat 1 57 0 674 231 75 6 chr6 148861547 148861707 -33553535 - MLT1E3 LTR MaLR -2 624 454 19437 147 19 34 chr6 148861725 148863165 -33552077 - L1MA3 LINE L1 0 7724 6264 2320 84 7 3 chr6 148863165 148863464 -33551778 + AluSq SINE Alu 1 300 -13 19437 147 19 34 chr6 148863464 148866865 -33548377 - L1MA3 LINE L1 -1460 6264 2814 2207 86 0 0 chr6 148866865 148867190 -33548052 + AluY SINE Alu 2 326 0 19437 147 19 34 chr6 148867190 148867517 -33547725 - L1MA3 LINE L1 -4910 2814 2484 1111 135 18 0 chr6 148867517 148867687 -33547555 - AluSg/x SINE Alu -3 307 135 19437 147 19 34 chr6 148867687 148870097 -33545145 - L1MA3 LINE L1 -5240 2484 98 1457 135 31 0 chr6 148870097 148870319 -33544923 - THE1B LTR MaLR -135 229 1 927 230 159 4 chr6 148870319 148870734 -33544508 - MLT1E3 LTR MaLR -151 465 1 186 293 0 0 chr6 148870833 148870874 -33544368 + L2 LINE L2 3263 3303 -10 1684 196 0 7 chr6 148871696 148871976 -33543266 + AluJo SINE Alu 3 280 -32 21 0 0 0 chr6 148872204 148872225 -33543017 + AT_rich Low_complexity Low_complexity 1 21 0 2412 82 3 3 chr6 148872581 148872886 -33542356 + AluSq SINE Alu 1 305 -8 729 297 111 29 chr6 148874066 148874409 -33540833 + L2 LINE L2 2937 3307 -6 317 335 116 23 chr6 148876025 148876060 -33539182 + MIR SINE MIR 1 31 -231 2486 96 0 0 chr6 148876060 148876372 -33538870 + AluSp SINE Alu 1 312 -1 317 335 116 23 chr6 148876372 148876551 -33538691 + MIR SINE MIR 31 235 -27 291 253 88 0 chr6 148877071 148877162 -33538080 + L2 LINE L2 3168 3266 -6 441 290 59 13 chr6 148878144 148878382 -33536860 - LTR16A1 LTR ERVL 0 457 209 189 332 138 53 chr6 148878667 148878793 -33536449 + L2 LINE L2 2554 2668 -646 2147 97 65 0 chr6 148878793 148879083 -33536159 - AluSc SINE Alu 0 309 1 189 332 138 53 chr6 148879083 148879203 -33536039 + L2 LINE L2 2668 2821 -493 1596 193 41 33 chr6 148879238 148879600 -33535642 + MLT1A1 LTR MaLR 1 365 0 196 352 55 21 chr6 148879612 148879757 -33535485 + L2 LINE L2 2914 3063 -209 2503 161 44 15 chr6 148880498 148880952 -33534290 + MLT1C LTR MaLR 1 467 0 266 304 10 20 chr6 148881939 148882041 -33533201 + GA-rich Low_complexity Low_complexity 2 102 0 710 302 133 40 chr6 148882882 148883435 -33531807 + L2 LINE L2 2699 3295 -18 338 342 50 15 chr6 148883447 148883646 -33531596 + MIR SINE MIR 56 261 -1 186 383 9 28 chr6 148883923 148884030 -33531212 + L3 LINE CR1 354 458 -1119 205 294 20 0 chr6 148884887 148884938 -33530304 + L3 LINE CR1 1483 1534 -43 312 329 75 31 chr6 148884998 148885159 -33530083 - MIR SINE MIR -74 188 21 26 0 0 0 chr6 148885368 148885394 -33529848 + AT_rich Low_complexity Low_complexity 1 26 0 315 276 126 52 chr6 148886070 148886244 -33528998 + MIR SINE MIR 20 206 -56 198 0 0 0 chr6 148886303 148886325 -33528917 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 417 277 66 30 chr6 148887840 148888019 -33527223 - MIR3 SINE MIR -62 146 4 202 327 0 19 chr6 148888213 148888265 -33526977 + MIR SINE MIR 43 93 -115 575 200 17 11 chr6 148888684 148888859 -33526383 + CT-rich Low_complexity Low_complexity 2 177 0 242 221 104 0 chr6 148888930 148889007 -33526235 - MER117 DNA MER1_type 0 197 113 774 287 41 12 chr6 148889449 148889693 -33525549 + MIR SINE MIR 6 256 -6 227 359 65 11 chr6 148890311 148890403 -33524839 + MIR SINE MIR 53 149 -113 2709 39 0 0 chr6 148890432 148890743 -33524499 - AluY SINE Alu 0 311 1 21 71 0 0 chr6 148890839 148890881 -33524361 + AT_rich Low_complexity Low_complexity 1 42 0 1259 135 20 33 chr6 148891370 148891615 -33523627 + MER7A DNA MER2_type 1 240 -106 247 79 66 118 chr6 148891637 148891713 -33523529 + MER7A DNA MER2_type 186 257 -89 909 137 20 0 chr6 148891717 148891863 -33523379 + MER7A DNA MER2_type 198 346 0 198 0 0 0 chr6 148894402 148894424 -33520818 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2281 86 0 0 chr6 148894427 148894719 -33520523 - AluY SINE Alu -19 292 1 1876 166 0 13 chr6 148895051 148895359 -33519883 - AluSx SINE Alu -8 304 1 1581 239 22 16 chr6 148895360 148895812 -33519430 - L1ME1 LINE L1 -102 6875 6421 916 253 52 57 chr6 148895815 148896140 -33519102 - MSTB2 LTR MaLR -6 451 127 2288 124 0 0 chr6 148896140 148896447 -33518795 - AluSc SINE Alu -2 307 1 916 253 52 57 chr6 148896447 148896560 -33518682 - MSTB2 LTR MaLR -330 127 15 1383 202 69 17 chr6 148896561 148897102 -33518140 - L1ME1 LINE L1 -549 6428 5870 1280 241 46 8 chr6 148897118 148897487 -33517755 - L1ME1 LINE L1 -1149 5808 5426 579 252 166 39 chr6 148897496 148898007 -33517235 - L1ME1 LINE L1 -4975 1880 1305 380 333 40 40 chr6 148898630 148898795 -33516447 - L1ME1 LINE L1 -6612 247 80 2028 109 0 0 chr6 148898795 148899062 -33516180 - AluSc SINE Alu -6 303 37 380 333 40 40 chr6 148899062 148899124 -33516118 - L1ME1 LINE L1 -6778 81 20 33 43 0 0 chr6 148899772 148899819 -33515423 + AT_rich Low_complexity Low_complexity 1 47 0 7799 212 17 10 chr6 148899901 148900813 -33514429 + L1MB2 LINE L1 3364 4268 -1878 2285 103 0 13 chr6 148900813 148901123 -33514119 + AluY SINE Alu 1 306 -5 7799 212 17 10 chr6 148901123 148902187 -33513055 + L1MB2 LINE L1 4268 5355 -791 12700 153 23 25 chr6 148902220 148903620 -33511622 + L1MA2 LINE L1 2568 3969 -2335 2443 77 0 6 chr6 148903620 148903931 -33511311 + AluY SINE Alu 2 310 -1 12700 153 23 25 chr6 148903931 148906272 -33508970 + L1MA2 LINE L1 3969 6304 0 3426 195 15 7 chr6 148906282 148907014 -33508228 + L1MB2 LINE L1 5355 6092 -79 425 289 5 43 chr6 148907011 148907173 -33508069 + L1MCa LINE L1 349 484 -5561 * 1511 107 51 0 chr6 148907206 148907421 -33507821 - MER30 DNA MER1_type -3 227 2 424 243 0 0 chr6 148907572 148907679 -33507563 + L1MCa LINE L1 570 676 -5369 * 731 206 183 38 chr6 148907663 148908002 -33507240 + L1MCa LINE L1 1111 1498 -5066 * 802 164 74 11 chr6 148908000 148908189 -33507053 + L1MC3 LINE L1 6898 7098 -687 333 207 23 11 chr6 148908191 148908278 -33506964 + MLT1F1 LTR MaLR 38 125 -442 2796 194 17 2 chr6 148908285 148908863 -33506379 + L1MC3 LINE L1 7199 7785 0 664 290 60 31 chr6 148908882 148908992 -33506250 + L1M3 LINE L1 4969 5074 -1096 2292 79 0 3 chr6 148908992 148909297 -33505945 - AluY SINE Alu -7 304 1 664 290 60 31 chr6 148909297 148909829 -33505413 + L1M3 LINE L1 5074 5630 -540 2444 64 3 10 chr6 148909938 148910250 -33504992 + AluY SINE Alu 1 310 -1 225 286 0 0 chr6 148910359 148910436 -33504806 + L1M3 LINE L1 5695 5771 -397 258 243 90 1 chr6 148910454 148910583 -33504659 + L1MD2 LINE L1 5814 5951 -219 411 325 8 0 chr6 148910947 148911070 -33504172 - L2 LINE L2 -2 3311 3188 25 31 0 0 chr6 148912818 148912850 -33502392 + AT_rich Low_complexity Low_complexity 1 32 0 2606 57 0 13 chr6 148913242 148913557 -33501685 - AluY SINE Alu 0 311 1 2048 120 21 3 chr6 148914115 148914406 -33500836 - AluSx SINE Alu -16 296 1 347 156 3 0 chr6 148914439 148914503 -33500739 + Alu SINE Alu 1 52 -256 229 158 0 0 chr6 148914604 148914683 -33500559 + Alu SINE Alu 247 325 0 2178 127 3 0 chr6 148914739 148915038 -33500204 - AluSx SINE Alu -10 302 3 24 67 0 0 chr6 148915218 148915263 -33499979 + AT_rich Low_complexity Low_complexity 1 45 0 180 0 0 0 chr6 148915404 148915424 -33499818 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1912 121 50 3 chr6 148915459 148915756 -33499486 - AluSq SINE Alu -1 312 2 215 246 49 16 chr6 148916483 148916544 -33498698 + L3 LINE CR1 1515 1577 0 267 376 71 38 chr6 148917049 148917259 -33497983 - L2 LINE L2 -63 3209 2993 1717 108 0 12 chr6 148917265 148917505 -33497737 - AluSc SINE Alu -72 237 1 418 350 12 0 chr6 148917588 148917748 -33497494 - L2 LINE L2 -610 2704 2543 408 97 0 0 chr6 148918352 148918414 -33496828 + (TG)n Simple_repeat Simple_repeat 2 63 0 2184 101 0 3 chr6 148919482 148919770 -33495472 - AluSc SINE Alu -14 295 9 2222 99 0 13 chr6 148919776 148920078 -33495164 - AluY SINE Alu -13 298 1 233 272 142 86 chr6 148920080 148920144 -33495098 - MIR SINE MIR -85 177 118 1890 65 0 4 chr6 148920144 148920389 -33494853 + L1PA6 LINE L1 5910 6153 -1 233 272 142 86 chr6 148920389 148920486 -33494756 - MIR SINE MIR -144 118 7 349 298 75 78 chr6 148921146 148921465 -33493777 - L3b LINE CR1 -144 1439 1122 697 178 0 0 chr6 148921535 148921642 -33493600 - FLAM_A SINE Alu -34 108 2 422 172 39 125 chr6 148921754 148921882 -33493360 - L2 LINE L2 -1 3312 3196 348 226 96 89 chr6 148922492 148922638 -33492604 + MIR SINE MIR 68 214 -48 2408 88 0 0 chr6 148922885 148923190 -33492052 + AluSg SINE Alu 1 305 -5 309 370 95 38 chr6 148923634 148923699 -33491543 + L2 LINE L2 2805 2865 -407 222 62 0 0 chr6 148923699 148923731 -33491511 + (CA)n Simple_repeat Simple_repeat 2 33 0 309 370 95 38 chr6 148923731 148924108 -33491134 + L2 LINE L2 2865 3272 0 490 250 73 67 chr6 148924300 148924464 -33490778 - MER5B DNA MER1_type -1 177 13 198 0 0 0 chr6 148924543 148924565 -33490677 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 306 0 0 0 chr6 148924564 148924598 -33490644 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr6 148924671 148924694 -33490548 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr6 148925831 148925859 -33489383 + AT_rich Low_complexity Low_complexity 1 28 0 956 200 86 20 chr6 148926559 148926804 -33488438 - MIR SINE MIR -1 261 1 276 232 80 9 chr6 148928056 148928168 -33487074 + MER113 DNA MER1_type? 2 121 -400 4076 117 102 113 chr6 148928189 148929607 -33485635 - pTR5 LTR ERV1 0 2438 742 535 243 18 0 chr6 148930388 148930499 -33484743 - MER81 DNA DNA 0 114 2 267 331 65 8 chr6 148930625 148930748 -33484494 + L2 LINE L2 2690 2819 -495 238 278 14 14 chr6 148930748 148930820 -33484422 - MER5A DNA MER1_type 0 189 118 196 223 11 11 chr6 148931773 148931867 -33483375 + (CA)n Simple_repeat Simple_repeat 1 94 0 2477 75 81 0 chr6 148932632 148932979 -33482263 - THE1C LTR MaLR 0 375 1 2124 148 12 36 chr6 148933295 148933708 -33481534 - Tigger2a DNA MER2_type -31 403 1 329 258 22 11 chr6 148935553 148935642 -33479600 + MLT1F LTR MaLR 48 137 -405 2013 189 46 23 chr6 148935644 148936077 -33479165 + MSTB2 LTR MaLR 15 457 0 1051 250 35 16 chr6 148936077 148936451 -33478791 + MLT1F LTR MaLR 181 542 0 379 260 25 124 chr6 148936595 148936910 -33478332 + MLT1F-int LTR MaLR 1038 1321 -50 318 50 0 0 chr6 148936910 148936950 -33478292 + (TG)n Simple_repeat Simple_repeat 2 41 0 1135 240 164 55 chr6 148936974 148937461 -33477781 + MLT1F LTR MaLR 1 540 -2 475 331 17 0 chr6 148937664 148937845 -33477397 - MIR SINE MIR -12 250 67 22 0 0 0 chr6 148937920 148937942 -33477300 + AT_rich Low_complexity Low_complexity 1 22 0 442 264 20 27 chr6 148940570 148940718 -33474524 - MIR SINE MIR -108 154 8 495 290 32 32 chr6 148941000 148941248 -33473994 + MIR SINE MIR 6 253 -9 308 345 59 17 chr6 148941272 148941391 -33473851 + L2 LINE L2 3137 3260 -12 24 32 0 0 chr6 148942248 148942279 -33472963 + AT_rich Low_complexity Low_complexity 1 31 0 1098 167 22 13 chr6 148942279 148942506 -33472736 - L1MC3 LINE L1 -22 7763 7535 1631 140 17 70 chr6 148942512 148942839 -33472403 - AluSq SINE Alu 0 311 1 375 307 92 48 chr6 148942856 148943086 -33472156 - MIR SINE MIR -7 255 15 309 389 27 5 chr6 148945212 148945397 -33469845 - MER5A DNA MER1_type 0 189 1 1352 214 123 75 chr6 148945401 148945962 -33469280 - MLT1G LTR MaLR -2 588 1 243 61 0 0 chr6 148945989 148946022 -33469220 + (TA)n Simple_repeat Simple_repeat 2 34 0 229 429 34 8 chr6 148946022 148946141 -33469101 + L2 LINE L2 3140 3261 -11 475 282 69 32 chr6 148946297 148946485 -33468757 + MIR SINE MIR 54 248 -14 1360 271 70 6 chr6 148946692 148947176 -33468066 - L1ME3A LINE L1 -44 6544 6030 3771 276 80 43 chr6 148947269 148949342 -33465900 - L1MCa LINE L1 -874 5690 3510 2606 47 0 0 chr6 148949342 148949640 -33465602 - AluY SINE Alu -13 298 1 3771 276 80 43 chr6 148949640 148950679 -33464563 - L1MCa LINE L1 -3054 3510 2510 531 297 137 25 chr6 148950794 148951524 -33463718 - L1MCa LINE L1 -4549 2015 1284 347 331 6 35 chr6 148951534 148951706 -33463536 - L1MCa LINE L1 -4955 1090 924 312 304 0 22 chr6 148952871 148952963 -33462279 + L1MC4 LINE L1 6614 6703 -1339 520 352 69 5 chr6 148953041 148953257 -33461985 + MIR SINE MIR 21 250 -12 237 65 0 0 chr6 148953444 148953475 -33461767 + (TC)n Simple_repeat Simple_repeat 1 31 0 789 232 5 5 chr6 148955064 148955101 -33460141 - MER3 DNA MER1_type 0 209 173 1515 179 78 52 chr6 148955101 148955162 -33460080 - MSTD LTR MaLR 0 396 338 2478 67 0 6 chr6 148955162 148955475 -33459767 + AluY SINE Alu 1 311 0 1515 179 78 52 chr6 148955475 148955799 -33459443 - MSTD LTR MaLR -58 338 1 789 232 5 5 chr6 148955799 148955959 -33459283 - MER3 DNA MER1_type -35 174 12 429 295 133 0 chr6 148956464 148956637 -33458605 + L2 LINE L2 376 571 -2743 3883 142 105 28 chr6 148956639 148957402 -33457840 - LTR12 LTR ERV1 0 826 5 2443 169 15 32 chr6 148957421 148958014 -33457228 - pTR5 LTR ERV1 -1087 1351 769 1421 270 178 13 chr6 148958014 148958695 -33456547 + L2 LINE L2 550 1342 -1972 1961 112 22 11 chr6 148958898 148959174 -33456068 - AluSc SINE Alu -30 279 1 453 280 75 8 chr6 148959528 148959767 -33455475 - L1ME LINE L1 -305 5816 5562 23 0 0 0 chr6 148960006 148960029 -33455213 + AT_rich Low_complexity Low_complexity 1 23 0 453 321 28 33 chr6 148960784 148960999 -33454243 + MIR SINE MIR 7 220 -42 822 228 6 0 chr6 148961141 148961321 -33453921 - L1PB4 LINE L1 -85 6071 5891 2476 78 0 3 chr6 148962192 148962501 -33452741 + AluY SINE Alu 1 308 -3 279 0 0 0 chr6 148962618 148962649 -33452593 + (TG)n Simple_repeat Simple_repeat 2 32 0 27 0 0 0 chr6 148962649 148962676 -33452566 + AT_rich Low_complexity Low_complexity 1 27 0 192 40 0 0 chr6 148962678 148962703 -33452539 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 204 40 0 0 chr6 148962822 148962847 -33452395 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2312 80 0 3 chr6 148962850 148963136 -33452106 - AluSq SINE Alu -15 298 14 658 139 89 19 chr6 148963186 148963344 -33451898 + L1MB2 LINE L1 6001 6169 -2 886 288 128 16 chr6 148964545 148965097 -33450145 - L2 LINE L2 -55 3258 2633 221 264 38 75 chr6 148965084 148965190 -33450052 + L3 LINE CR1 1187 1288 -289 * 692 260 100 59 chr6 148965400 148965962 -33449280 - L1ME4a LINE L1 -1 6120 5536 281 333 0 20 chr6 148965994 148966096 -33449146 + L3 LINE CR1 1390 1489 -88 23 86 0 0 chr6 148966377 148966435 -33448807 + AT_rich Low_complexity Low_complexity 1 58 0 348 277 66 22 chr6 148966547 148966684 -33448558 - L2 LINE L2 -7 3306 3164 2201 104 7 13 chr6 148967112 148967421 -33447821 + AluSx SINE Alu 1 307 -5 198 314 86 0 chr6 148967945 148968015 -33447227 - L2 LINE L2 -58 3255 3180 865 288 90 10 chr6 148968316 148968715 -33446527 + L1ME4a LINE L1 5357 5787 -334 319 248 113 8 chr6 148968971 148969104 -33446138 + L1ME4a LINE L1 5964 6110 -11 221 261 92 0 chr6 148969567 148969632 -33445610 + L2 LINE L2 3241 3311 -2 1989 148 0 7 chr6 148969632 148969929 -33445313 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 148970230 148970251 -33444991 + AT_rich Low_complexity Low_complexity 1 21 0 193 318 12 75 chr6 148971587 148971760 -33443482 + L3 LINE CR1 1177 1338 -239 505 71 12 24 chr6 148971793 148971877 -33443365 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 356 197 4 0 chr6 148971884 148971971 -33443271 - Alu SINE Alu -4 298 239 405 309 18 83 chr6 148972619 148972795 -33442447 + L3 LINE CR1 1366 1527 -50 947 245 132 17 chr6 148972795 148973150 -33442092 - MSTD LTR MaLR 0 396 1 405 309 18 83 chr6 148973150 148973190 -33442052 + L3 LINE CR1 1527 1568 -9 1761 118 20 0 chr6 148973330 148973576 -33441666 - AluSx SINE Alu -15 297 47 320 354 0 18 chr6 148974069 148974182 -33441060 + MIR SINE MIR 30 140 -68 228 264 0 38 chr6 148974489 148974542 -33440700 + MIR SINE MIR 83 133 -75 316 391 29 0 chr6 148974759 148974897 -33440345 - MIR3 SINE MIR -12 196 55 233 254 45 0 chr6 148977170 148977237 -33438005 + L3 LINE CR1 316 385 -1192 371 341 18 0 chr6 148977308 148977478 -33437764 + L3 LINE CR1 517 689 -888 380 271 245 7 chr6 148977562 148977717 -33437525 + MIR SINE MIR 50 241 -21 247 248 43 75 chr6 148977921 148978082 -33437160 - L1MC4a LINE L1 -1802 6006 5851 180 283 22 0 chr6 148978238 148978284 -33436958 - L2 LINE L2 -1 3312 3266 * 548 287 93 5 chr6 148978253 148978469 -33436773 - MIR SINE MIR -10 252 18 229 366 0 0 chr6 148980134 148980205 -33435037 + L2 LINE L2 2687 2757 -557 865 243 64 0 chr6 148980402 148980620 -33434622 + MIR SINE MIR 17 248 -14 189 107 0 0 chr6 148980951 148980979 -33434263 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 303 246 149 18 chr6 148981238 148981352 -33433890 - L2 LINE L2 -5 3308 3180 2352 102 0 0 chr6 148981475 148981779 -33433463 - AluSp SINE Alu -9 304 1 319 297 81 43 chr6 148982042 148982227 -33433015 - MIR3 SINE MIR -13 195 4 378 0 0 0 chr6 148986096 148986138 -33429104 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 71 0 0 chr6 148987197 148987239 -33428003 + AT_rich Low_complexity Low_complexity 1 42 0 2139 113 7 3 chr6 148987367 148987669 -33427573 + AluSp SINE Alu 1 303 -10 258 225 25 62 chr6 148988681 148988761 -33426481 + MER5B DNA MER1_type 1 77 -101 336 331 84 7 chr6 148990284 148990559 -33424683 + L1ME LINE L1 4263 4558 -1588 348 291 193 0 chr6 148990588 148990801 -33424441 + L1ME LINE L1 5412 5665 -456 208 156 0 22 chr6 148991030 148991075 -33424167 + (TG)n Simple_repeat Simple_repeat 2 45 0 368 329 136 7 chr6 148993874 148994184 -33421058 - MLT1I LTR MaLR -2 407 58 1794 213 258 19 chr6 148994650 148995372 -33419870 - MER97a DNA MER1_type? 0 894 1 521 280 0 8 chr6 148995591 148995716 -33419526 + MIR SINE MIR 17 140 -122 502 279 19 39 chr6 148996666 148996820 -33418422 - MIR SINE MIR -55 207 57 243 0 0 0 chr6 148996820 148996847 -33418395 + (TG)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr6 148996907 148996932 -33418310 + AT_rich Low_complexity Low_complexity 1 25 0 290 218 26 0 chr6 148998970 148999048 -33416194 - MER116 DNA Mariner 0 80 1 22 80 0 0 chr6 148999072 148999122 -33416120 + AT_rich Low_complexity Low_complexity 1 50 0 2522 277 141 14 chr6 148999332 149000364 -33414878 - HAL1 LINE L1 -1299 1208 47 218 339 121 0 chr6 149050401 149050525 -33364717 + MIR SINE MIR 47 185 -77 285 374 54 39 chr6 149050582 149050991 -33364251 + L2 LINE L2 2553 2967 -347 180 0 0 0 chr6 149051152 149051172 -33364070 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2199 94 7 0 chr6 149051174 149051460 -33363782 - AluSc SINE Alu -21 288 1 3077 290 113 57 chr6 149051466 149053839 -33361403 - HAL1 LINE L1 -2 2505 1 318 350 133 10 chr6 149055875 149056078 -33359164 - MIR SINE MIR -3 259 32 791 205 39 56 chr6 149056374 149056608 -33358634 + L2 LINE L2 3084 3313 0 203 153 28 42 chr6 149058247 149058319 -33356923 + GA-rich Low_complexity Low_complexity 4 74 0 201 194 65 48 chr6 149059260 149059322 -33355920 + MER91B DNA MER1_type 1 63 -127 315 341 33 0 chr6 149059825 149059953 -33355289 - MIR SINE MIR -66 142 34 185 184 41 0 chr6 149061748 149061797 -33353445 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 1121 266 40 57 chr6 149061992 149062469 -33352773 + MLT1J LTR MaLR 36 504 -7 2451 80 0 0 chr6 149063550 149063861 -33351381 + AluY SINE Alu 1 311 0 2379 99 0 0 chr6 149063872 149064184 -33351058 + AluSx SINE Alu 1 312 0 236 288 12 12 chr6 149064512 149064592 -33350650 + CT-rich Low_complexity Low_complexity 6 85 0 2065 130 0 7 chr6 149064805 149065125 -33350117 + AluJb SINE Alu 1 318 0 459 35 0 0 chr6 149065228 149065285 -33349957 + (CA)n Simple_repeat Simple_repeat 1 57 0 9995 130 40 47 chr6 149065646 149066527 -33348715 + Tigger1 DNA MER2_type 24 910 -1508 2215 163 50 24 chr6 149066527 149066902 -33348340 + MSTA LTR MaLR 1 390 -38 2222 95 3 3 chr6 149066902 149067196 -33348046 - AluY SINE Alu -17 294 1 2215 163 50 24 chr6 149067196 149067237 -33348005 + MSTA LTR MaLR 390 428 0 9995 130 40 47 chr6 149067237 149067817 -33347425 + Tigger1 DNA MER2_type 910 1493 -925 2185 87 14 0 chr6 149067817 149068105 -33347137 + AluY SINE Alu 20 311 0 9995 130 40 47 chr6 149068105 149068658 -33346584 + Tigger1 DNA MER2_type 1493 2049 -369 2805 13 0 0 chr6 149068658 149068966 -33346276 + AluYb8 SINE Alu 1 308 -10 9995 130 40 47 chr6 149068966 149069062 -33346180 + Tigger1 DNA MER2_type 2049 2144 -274 2372 77 0 29 chr6 149069062 149069374 -33345868 + AluSc SINE Alu 1 303 -6 9995 130 40 47 chr6 149069374 149069428 -33345814 + Tigger1 DNA MER2_type 2144 2197 -221 1085 101 0 0 chr6 149069428 149069587 -33345655 - L1PA13 LINE L1 0 6163 6005 9995 130 40 47 chr6 149069587 149069685 -33345557 + Tigger1 DNA MER2_type 2197 2294 -124 2484 73 0 0 chr6 149069685 149069987 -33345255 - AluY SINE Alu -9 302 1 9995 130 40 47 chr6 149069987 149070105 -33345137 + Tigger1 DNA MER2_type 2294 2417 -1 318 299 56 35 chr6 149071892 149072036 -33343206 - MIR SINE MIR -53 209 63 2396 75 0 0 chr6 149072285 149072590 -33342652 + AluY SINE Alu 1 305 -6 25 31 0 0 chr6 149072640 149072672 -33342570 + AT_rich Low_complexity Low_complexity 1 32 0 501 17 0 0 chr6 149073314 149073372 -33341870 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 1653 172 0 13 chr6 149073382 149073685 -33341557 - AluJb SINE Alu -13 299 1 180 0 0 0 chr6 149074042 149074062 -33341180 + (GA)n Simple_repeat Simple_repeat 2 21 0 348 373 78 24 chr6 149074742 149075037 -33340205 - L3 LINE CR1 -3 1574 1264 307 328 90 17 chr6 149075147 149075324 -33339918 - MIR SINE MIR -18 244 55 246 192 0 0 chr6 149075658 149075710 -33339532 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 2107 120 0 0 chr6 149075726 149076010 -33339232 - AluSc SINE Alu -25 284 1 1266 197 45 10 chr6 149076017 149076306 -33338936 - Charlie4a DNA MER1_type -191 317 19 446 342 213 16 chr6 149076326 149076960 -33338282 - L3 LINE CR1 -629 948 190 236 250 0 0 chr6 149077071 149077119 -33338123 + CT-rich Low_complexity Low_complexity 2 49 0 2446 126 83 2 chr6 149077738 149078134 -33337108 + MSTA LTR MaLR 1 428 0 2323 50 18 0 chr6 149078889 149079190 -33336052 + AluSp SINE Alu 1 306 0 2355 181 208 86 chr6 149079815 149080724 -33334518 - LTR28 LTR ERV1 0 1020 1 2407 87 0 3 chr6 149081107 149081416 -33333826 - AluSc SINE Alu -1 308 1 219 373 101 30 chr6 149083830 149083999 -33331243 + MER5A DNA MER1_type 9 189 0 305 239 115 26 chr6 149085194 149085307 -33329935 + MIR SINE MIR 43 165 -97 619 296 130 5 chr6 149086805 149087028 -33328214 - MIR SINE MIR -4 258 8 22 0 0 0 chr6 149087044 149087066 -33328176 + AT_rich Low_complexity Low_complexity 1 22 0 1483 189 23 78 chr6 149087881 149088277 -33326965 - MLT1A2 LTR MaLR 0 374 1 29 28 0 0 chr6 149089296 149089332 -33325910 + AT_rich Low_complexity Low_complexity 1 36 0 269 283 43 36 chr6 149092177 149092474 -33322768 + L1MC/D LINE L1 5209 5514 -755 226 180 82 16 chr6 149092675 149092736 -33322506 + L1P4 LINE L1 5772 5836 -327 2177 101 31 0 chr6 149092800 149093088 -33322154 + AluSp SINE Alu 1 297 -16 1565 249 60 34 chr6 149094129 149094468 -33320774 + LTR40a LTR ERVL 6 364 -155 2248 94 6 28 chr6 149094468 149094786 -33320456 + AluY SINE Alu 1 311 0 1565 249 60 34 chr6 149094786 149094945 -33320297 + LTR40a LTR ERVL 364 517 -2 269 238 16 98 chr6 149095679 149095801 -33319441 + HsTC2 DNA Tc2 4 115 -1783 244 267 128 58 chr6 149096054 149096226 -33319016 - MIR SINE MIR -73 189 6 1338 215 116 42 chr6 149096293 149097202 -33318040 - LTR28 LTR ERV1 0 1020 1 321 293 0 0 chr6 149097256 149097331 -33317911 - MIR SINE MIR -56 152 78 2215 81 50 3 chr6 149097821 149098118 -33317124 + AluY SINE Alu 1 311 0 26 30 0 0 chr6 149098276 149098309 -33316933 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr6 149098949 149098985 -33316257 + AT_rich Low_complexity Low_complexity 1 36 0 180 77 0 0 chr6 149099216 149099242 -33316000 + (TAA)n Simple_repeat Simple_repeat 2 27 0 293 263 11 11 chr6 149099319 149099414 -33315828 - MER110 LTR ERV1 0 491 397 452 239 194 45 chr6 149099460 149099774 -33315468 - MER110-int LTR ERV1 -1511 3136 2776 231 205 0 48 chr6 149099854 149099937 -33315305 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 5993 130 31 26 chr6 149100510 149102201 -33313041 - L1PA14 LINE L1 -2 6159 4471 722 123 44 18 chr6 149103632 149103746 -33311496 + THE1B LTR MaLR 1 117 -247 1313 121 8 76 chr6 149103842 149103897 -33311345 + THE1B LTR MaLR 133 190 -174 2458 78 0 0 chr6 149103897 149104203 -33311039 + AluY SINE Alu 1 306 -5 1313 121 8 76 chr6 149104203 149104396 -33310846 + THE1B LTR MaLR 190 364 0 1758 148 85 20 chr6 149104727 149105079 -33310163 + THE1C LTR MaLR 1 375 0 1477 236 16 5 chr6 149105503 149105871 -33309371 - MER110 LTR ERV1 -81 410 39 2675 88 13 8 chr6 149108351 149108724 -33306518 - THE1C LTR MaLR 0 375 1 432 247 145 12 chr6 149109180 149109346 -33305896 - MIR3 SINE MIR -5 203 16 2183 165 53 7 chr6 149109388 149109801 -33305441 + MSTB1 LTR MaLR 1 432 0 2426 70 0 0 chr6 149111271 149111570 -33303672 - AluY SINE Alu -12 299 1 21 57 0 0 chr6 149112551 149112586 -33302656 + AT_rich Low_complexity Low_complexity 1 35 0 225 94 0 0 chr6 149112918 149112950 -33302292 + (CTAA)n Simple_repeat Simple_repeat 1 32 0 1748 208 23 23 chr6 149113042 149113436 -33301806 - MSTD LTR MaLR -2 394 1 1413 82 106 0 chr6 149113779 149113987 -33301255 + MER30 DNA MER1_type 1 230 0 646 271 61 6 chr6 149114748 149114929 -33300313 + MER58A DNA MER1_type 2 192 -32 1935 76 24 4 chr6 149115006 149115257 -33299985 + AluY SINE Alu 41 296 -15 881 156 28 39 chr6 149115262 149115283 -33299959 + MER3 DNA MER1_type 27 45 -164 400 239 96 41 chr6 149115283 149115480 -33299762 - MER3 DNA MER1_type 0 209 2 550 177 18 0 chr6 149115534 149115647 -33299595 + MER3 DNA MER1_type 82 196 -13 680 257 13 0 chr6 149115667 149115819 -33299423 + MER5A DNA MER1_type 1 154 -35 312 168 0 33 chr6 149115820 149115944 -33299298 - MER5A DNA MER1_type 0 189 4 253 242 172 23 chr6 149115983 149116111 -33299131 + Charlie7 DNA MER1_type 45 191 -2421 1986 238 165 8 chr6 149116163 149116904 -33298338 - L1MC4 LINE L1 -1849 6193 5337 378 270 36 0 chr6 149116962 149117099 -33298143 + Charlie7 DNA MER1_type 378 519 -2093 1205 227 122 73 chr6 149117146 149117840 -33297402 + Charlie7 DNA MER1_type 1746 2479 -133 1401 190 82 4 chr6 149117840 149118109 -33297133 + AluJb SINE Alu 1 290 -12 1205 227 122 73 chr6 149118109 149118142 -33297100 + Charlie7 DNA MER1_type 2479 2509 -103 216 185 0 0 chr6 149118277 149118331 -33296911 + GA-rich Low_complexity Low_complexity 1 54 0 258 95 0 0 chr6 149120536 149120578 -33294664 + (CA)n Simple_repeat Simple_repeat 2 43 0 1603 161 28 7 chr6 149121147 149121432 -33293810 - AluSx SINE Alu -9 303 13 246 192 0 0 chr6 149123996 149124048 -33291194 + (CA)n Simple_repeat Simple_repeat 2 53 0 831 242 9 47 chr6 149124164 149124202 -33291040 + MIR SINE MIR 32 70 -192 1625 201 27 95 chr6 149124202 149124646 -33290596 + MLT2D LTR ERVL 1 414 0 831 242 9 47 chr6 149124646 149124818 -33290424 + MIR SINE MIR 70 234 -28 29 47 0 0 chr6 149124890 149124933 -33290309 + AT_rich Low_complexity Low_complexity 1 43 0 424 247 24 54 chr6 149125998 149126164 -33289078 - L2 LINE L2 -1 3312 3152 353 22 22 0 chr6 149126489 149126535 -33288707 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 1105 102 0 11 chr6 149126535 149126712 -33288530 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1877 107 37 18 chr6 149126712 149126984 -33288258 - AluSg1 SINE Alu -32 277 1 2343 102 0 0 chr6 149127077 149127381 -33287861 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 149127581 149127605 -33287637 + AT_rich Low_complexity Low_complexity 1 24 0 318 341 77 55 chr6 149129046 149129228 -33286014 - MIR3 SINE MIR -21 187 2 275 315 18 36 chr6 149129282 149129393 -33285849 + L2 LINE L2 3204 3312 -1 185 288 68 0 chr6 149130296 149130355 -33284887 - MIR SINE MIR -94 168 106 2373 62 3 7 chr6 149131254 149131561 -33283681 + AluY SINE Alu 1 306 -5 454 312 50 27 chr6 149131620 149131841 -33283401 - MIR SINE MIR -13 249 24 3121 181 103 23 chr6 149135242 149135928 -33279314 + LTR48 LTR ERV1 1 741 -46 238 387 57 16 chr6 149136022 149136146 -33279096 - L2 LINE L2 -25 3247 3119 537 309 114 0 chr6 149136354 149136652 -33278590 + MER46C DNA MER2_type 2 333 -5 951 90 37 0 chr6 149136656 149136790 -33278452 + AluSq SINE Alu 146 284 -29 208 0 0 59 chr6 149136793 149136827 -33278415 + (CAA)n Simple_repeat Simple_repeat 2 33 0 212 167 0 0 chr6 149137229 149137271 -33277971 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 658 240 29 49 chr6 149137358 149137562 -33277680 - MIR SINE MIR 0 262 63 204 288 0 45 chr6 149137613 149137679 -33277563 + L2 LINE L2 3241 3303 -10 2019 95 0 4 chr6 149137767 149138040 -33277202 - AluY SINE Alu 0 311 40 2260 99 0 3 chr6 149138612 149138906 -33276336 - AluSc SINE Alu -16 293 1 2427 68 0 0 chr6 149139435 149139731 -33275511 - AluY SINE Alu -15 296 1 27 29 0 0 chr6 149139880 149139914 -33275328 + AT_rich Low_complexity Low_complexity 1 34 0 320 279 109 0 chr6 149142471 149142618 -33272624 - MER103 DNA DNA 0 166 4 2681 180 37 108 chr6 149143182 149143387 -33271855 + MER44D DNA MER2_type 2 220 -2267 234 0 0 0 chr6 149143387 149143413 -33271829 + (CAA)n Simple_repeat Simple_repeat 1 26 0 2681 180 37 108 chr6 149143413 149143994 -33271248 + MER44D DNA MER2_type 220 604 -1 189 0 0 0 chr6 149145422 149145443 -33269799 + (A)n Simple_repeat Simple_repeat 1 21 0 2104 120 3 10 chr6 149146561 149146862 -33268380 - AluSx SINE Alu -13 299 1 373 299 0 19 chr6 149147155 149147262 -33267980 + MLT1J LTR MaLR 105 209 -302 248 263 100 105 chr6 149147599 149147741 -33267501 + L3 LINE CR1 1352 1494 -83 2466 72 0 0 chr6 149147741 149148046 -33267196 - AluY SINE Alu -6 305 1 248 263 100 105 chr6 149148046 149148093 -33267149 + L3 LINE CR1 1494 1540 -37 408 256 94 11 chr6 149148305 149148485 -33266757 + L1ME1 LINE L1 4060 4254 -1892 3874 254 79 52 chr6 149148522 149149296 -33265946 + L1ME3A LINE L1 1461 2213 -4213 2443 74 0 3 chr6 149149296 149149608 -33265634 + AluY SINE Alu 1 311 0 3874 254 79 52 chr6 149149608 149151600 -33263642 + L1ME3A LINE L1 2213 4442 -1984 5893 182 25 14 chr6 149151605 149153680 -33261562 + L1PA15 LINE L1 4081 6161 -4 1273 230 82 7 chr6 149153809 149154213 -33261029 + L1ME1 LINE L1 5284 5717 -447 * 3580 234 138 13 chr6 149154208 149155195 -33260047 - L1MCb LINE L1 -2849 3715 2852 1961 161 132 8 chr6 149155195 149155574 -33259668 - MSTB LTR MaLR 0 426 1 3580 234 138 13 chr6 149155574 149155653 -33259589 - L1MCb LINE L1 -3712 2852 2784 213 65 0 0 chr6 149155653 149155684 -33259558 + (TA)n Simple_repeat Simple_repeat 2 32 0 2121 103 0 0 chr6 149155684 149155965 -33259277 - AluSg SINE Alu -29 281 1 3580 234 138 13 chr6 149155965 149157681 -33257561 - L1MCb LINE L1 -3779 2785 571 373 244 12 0 chr6 149157784 149157870 -33257372 - L1MCb LINE L1 -5481 564 478 522 262 38 22 chr6 149157880 149158063 -33257179 - L1MCb LINE L1 -5859 186 1 1191 264 124 12 chr6 149158087 149158507 -33256735 + L1ME1 LINE L1 5695 6161 -5 1861 133 0 21 chr6 149158561 149158846 -33256396 + AluSx SINE Alu 25 303 -9 869 294 80 25 chr6 149158847 149159411 -33255831 + L1ME3A LINE L1 4607 5225 -1201 1935 273 100 25 chr6 149159600 149160521 -33254721 + L1ME3A LINE L1 5453 6445 -5 194 217 117 33 chr6 149161004 149161064 -33254178 - L3 LINE CR1 -309 1268 1204 283 200 43 0 chr6 149161344 149161414 -33253828 - MLT1J2 LTR MaLR -29 421 349 2526 61 0 6 chr6 149161452 149161764 -33253478 + AluSq SINE Alu 3 312 -1 2178 57 0 0 chr6 149161764 149162024 -33253218 + AluY SINE Alu 33 294 -17 327 279 126 9 chr6 149163233 149163344 -33251898 - MIR SINE MIR -66 142 19 229 291 0 23 chr6 149163365 149163451 -33251791 + GA-rich Low_complexity Low_complexity 3 86 0 373 306 144 6 chr6 149163502 149163675 -33251567 - MIR SINE MIR -65 197 1 3042 122 18 26 chr6 149164922 149165413 -33249829 + LTR45B LTR ERV1 3 489 0 36 23 0 0 chr6 149166447 149166490 -33248752 + AT_rich Low_complexity Low_complexity 1 43 0 224 296 0 34 chr6 149168248 149168336 -33246906 + MIR SINE MIR 178 262 0 186 346 13 26 chr6 149168360 149168438 -33246804 - MIR SINE MIR -87 121 45 217 221 73 29 chr6 149168490 149168558 -33246684 - MIR SINE MIR -94 168 98 2162 164 22 0 chr6 149170904 149171271 -33243971 - MLT1B LTR MaLR 0 390 16 23 54 0 0 chr6 149171490 149171527 -33243715 + AT_rich Low_complexity Low_complexity 1 37 0 236 337 65 0 chr6 149171861 149171953 -33243289 - L2 LINE L2 -43 3270 3173 3013 82 17 0 chr6 149172016 149172430 -33242812 + L1PA10 LINE L1 5745 6165 -3 197 286 12 107 chr6 149172505 149172589 -33242653 - L2 LINE L2 -339 2975 2900 260 245 32 85 chr6 149172600 149172694 -33242548 - L2 LINE L2 0 3313 3225 226 373 59 0 chr6 149172794 149172896 -33242346 - L2 LINE L2 -186 3086 2979 193 329 73 12 chr6 149173943 149174025 -33241217 + L2 LINE L2 3208 3294 -19 612 178 191 7 chr6 149174175 149174327 -33240915 - MER5A DNA MER1_type -9 180 1 29 0 0 0 chr6 149174521 149174550 -33240692 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 149174988 149175009 -33240233 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr6 149175046 149175095 -33240147 + AT_rich Low_complexity Low_complexity 1 49 0 421 293 132 19 chr6 149175307 149175724 -33239518 + L1ME4a LINE L1 5633 6096 -25 246 193 0 0 chr6 149176699 149176756 -33238486 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 340 213 0 43 chr6 149176757 149176945 -33238297 + (TA)n Simple_repeat Simple_repeat 1 180 0 262 291 23 23 chr6 149177078 149177164 -33238078 - L3b LINE CR1 -126 1457 1372 207 333 21 0 chr6 149177899 149177992 -33237250 + CT-rich Low_complexity Low_complexity 5 99 0 1615 173 25 81 chr6 149178277 149178671 -33236571 + MLT1A2 LTR MaLR 3 374 0 1471 166 54 54 chr6 149178914 149179209 -33236033 - AluJo SINE Alu -17 295 1 414 319 83 6 chr6 149179640 149179809 -33235433 + MIR SINE MIR 60 241 -21 22 0 0 0 chr6 149181227 149181249 -33233993 + AT_rich Low_complexity Low_complexity 1 22 0 270 227 0 109 chr6 149181710 149181820 -33233422 + MIR SINE MIR 126 223 -39 1361 138 28 20 chr6 149181853 149182106 -33233136 - L1MC1 LINE L1 -6 6327 6073 1874 146 14 14 chr6 149182705 149183000 -33232242 + AluSx SINE Alu 1 295 -17 389 255 104 0 chr6 149183280 149183386 -33231856 - L2 LINE L2 0 3313 3197 207 139 0 0 chr6 149183628 149183664 -33231578 + (TG)n Simple_repeat Simple_repeat 1 36 0 413 288 15 8 chr6 149184356 149184488 -33230754 - MIR SINE MIR -110 152 20 25 0 0 0 chr6 149184624 149184649 -33230593 + AT_rich Low_complexity Low_complexity 1 25 0 217 225 0 0 chr6 149186009 149186049 -33229193 + L2 LINE L2 2865 2904 -368 282 83 0 0 chr6 149187406 149187442 -33227800 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 604 164 28 28 chr6 149187442 149187696 -33227546 + CT-rich Low_complexity Low_complexity 1 254 0 1938 208 82 12 chr6 149187725 149188149 -33227093 + MLT2B1 LTR ERVL 1 454 -66 2050 160 14 14 chr6 149188157 149188520 -33226722 - Tigger7 DNA MER2_type 0 2487 2125 577 235 0 0 chr6 149188525 149188644 -33226598 - Tigger7 DNA MER2_type -586 119 1 218 32 32 0 chr6 149188644 149188675 -33226567 + (TAA)n Simple_repeat Simple_repeat 1 32 0 654 238 12 18 chr6 149188679 149188847 -33226395 + MLT1A2-int LTR MaLR 86 252 -1483 765 208 32 7 chr6 149188851 149189005 -33226237 + MLT1A2 LTR MaLR 217 374 0 336 185 15 0 chr6 149189005 149189061 -33226181 - MER112 DNA MER1_type -203 57 1 1756 229 75 20 chr6 149190323 149190872 -33224370 - L1ME2 LINE L1 0 6164 5586 458 221 66 33 chr6 149191136 149191258 -33223984 + L2 LINE L2 3187 3312 -1 662 279 62 10 chr6 149191265 149191473 -33223769 - MIR SINE MIR -29 233 15 460 269 115 43 chr6 149194899 149195107 -33220135 + MIR SINE MIR 21 243 -19 1310 172 39 103 chr6 149195993 149196383 -33218859 - MLT1A1 LTR MaLR 0 365 1 278 281 23 78 chr6 149196567 149196695 -33218547 - MIR SINE MIR -122 140 20 348 324 68 53 chr6 149197018 149197225 -33218017 + MIR SINE MIR 23 232 -30 685 293 18 37 chr6 149197628 149197901 -33217341 + L3 LINE CR1 703 970 -607 1127 167 9 22 chr6 149199495 149199722 -33215520 + MER44D DNA MER2_type 6 499 -110 6474 153 12 4 chr6 149199832 149201496 -33213746 - L1P4 LINE L1 -339 5822 4144 1514 249 132 24 chr6 149201492 149202279 -33212963 - L1M4c LINE L1 -4833 1709 932 * 697 265 118 65 chr6 149203142 149203672 -33211570 + MLT1G1 LTR MaLR 1 595 0 2304 96 3 0 chr6 149204180 149204483 -33210759 - AluSp SINE Alu -9 304 1 4205 120 126 140 chr6 149205801 149207231 -33208011 - pTR5 LTR ERV1 0 2438 66 225 243 29 43 chr6 149207564 149207634 -33207608 + L2 LINE L2 3245 3313 0 23 0 0 0 chr6 149208031 149208054 -33207188 + AT_rich Low_complexity Low_complexity 1 23 0 674 152 12 103 chr6 149209896 149210061 -33205181 + MLT2B1 LTR ERVL 371 520 0 278 267 40 50 chr6 149210065 149210166 -33205076 - L3b LINE CR1 -235 1348 1249 284 146 24 61 chr6 149210774 149210856 -33204386 - L1ME LINE L1 -250 5871 5793 382 346 65 56 chr6 149210914 149211252 -33203990 - L1ME LINE L1 -2176 5632 5292 211 189 19 19 chr6 149211278 149211331 -33203911 + (TA)n Simple_repeat Simple_repeat 2 54 0 358 254 56 8 chr6 149211368 149211494 -33203748 - L1ME4a LINE L1 -1 6120 5989 278 172 31 31 chr6 149211537 149211601 -33203641 - L1PA8A LINE L1 -262 5869 5806 211 231 13 13 chr6 149211642 149211720 -33203522 + (TA)n Simple_repeat Simple_repeat 2 79 0 186 238 113 100 chr6 149211908 149211988 -33203254 + L2 LINE L2 3150 3230 -42 2194 98 17 0 chr6 149212097 149212392 -33202850 + AluSx SINE Alu 1 300 -12 700 198 9 118 chr6 149212620 149212832 -33202410 + MLT1E1 LTR MaLR 1 189 -465 705 264 101 0 chr6 149212904 149213131 -33202111 + MLT1E1 LTR MaLR 405 654 0 2183 104 0 0 chr6 149213304 149213591 -33201651 + AluSx SINE Alu 1 287 -25 390 21 0 0 chr6 149213595 149213642 -33201600 + (CA)n Simple_repeat Simple_repeat 2 48 0 3666 133 67 59 chr6 149213646 149214363 -33200879 + L1PA16 LINE L1 5440 6162 -4 419 310 159 21 chr6 149214550 149214972 -33200270 + HAL1 LINE L1 1442 1921 -586 483 287 13 0 chr6 149215077 149215227 -33200015 + L1MC4a LINE L1 5754 5905 -1903 406 280 62 97 chr6 149215484 149215741 -33199501 + L2 LINE L2 3060 3307 -6 21 0 0 0 chr6 149216076 149216097 -33199145 + AT_rich Low_complexity Low_complexity 1 21 0 263 246 156 52 chr6 149217180 149217325 -33197917 - MIR SINE MIR -62 146 27 225 196 0 0 chr6 149218496 149218552 -33196690 + A-rich Low_complexity Low_complexity 1 56 0 219 114 0 0 chr6 149219085 149219120 -33196122 + (T)n Simple_repeat Simple_repeat 1 35 0 2040 95 54 7 chr6 149219132 149219427 -33195815 - AluSg SINE Alu -1 309 1 2417 58 0 32 chr6 149219865 149220177 -33195065 - AluY SINE Alu -9 302 1 262 383 40 25 chr6 149220921 149221122 -33194120 + L2 LINE L2 246 449 -2865 248 316 26 26 chr6 149221179 149221293 -33193949 - Charlie8 DNA MER1_type -2142 275 162 579 112 0 0 chr6 149221294 149221383 -33193859 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 2144 112 16 0 chr6 149221383 149221686 -33193556 - AluY SINE Alu -1 310 3 273 200 24 24 chr6 149221689 149221774 -33193468 - Charlie8 DNA MER1_type -2250 167 83 859 239 19 24 chr6 149222053 149222266 -33192976 - MER58A DNA MER1_type -11 213 2 862 252 56 28 chr6 149222393 149222643 -33192599 - MIR SINE MIR 0 262 6 186 302 0 0 chr6 149222762 149222815 -33192427 + L2 LINE L2 2709 2761 -553 256 148 37 37 chr6 149222965 149223019 -33192223 + L2 LINE L2 3219 3272 0 1471 275 47 17 chr6 149223093 149223566 -33191676 - LTR16C LTR ERVL -1 490 4 21 57 0 0 chr6 149224224 149224259 -33190983 + AT_rich Low_complexity Low_complexity 1 35 0 283 359 16 27 chr6 149224460 149224644 -33190598 - L2 LINE L2 -831 2483 2302 194 143 20 0 chr6 149225611 149225660 -33189582 + CT-rich Low_complexity Low_complexity 1 50 0 1899 126 181 8 chr6 149225775 149226140 -33189102 - MSTA LTR MaLR 0 428 1 9079 156 10 32 chr6 149226140 149227754 -33187488 - MSTA-int LTR MaLR 0 1580 3 2036 141 128 10 chr6 149227756 149228139 -33187103 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr6 149228698 149228719 -33186523 + AT_rich Low_complexity Low_complexity 1 21 0 380 256 11 11 chr6 149229254 149229344 -33185898 - LTR16A1 LTR ERVL -6 451 362 2894 238 26 25 chr6 149229639 149230437 -33184805 - L1ME1 LINE L1 -5 6161 5363 * 3518 256 43 19 chr6 149230433 149231747 -33183495 - L1ME1 LINE L1 -2364 3782 2432 1026 191 34 5 chr6 149231747 149231951 -33183291 + MER6B DNA MER2_type 1 210 0 3518 256 43 19 chr6 149231951 149231998 -33183244 - L1ME1 LINE L1 -3714 2432 2388 2457 74 0 3 chr6 149232261 149232572 -33182670 + AluY SINE Alu 1 310 -1 757 250 138 13 chr6 149232849 149233081 -33182161 + MIR SINE MIR 2 262 0 1159 306 26 44 chr6 149236125 149236625 -33178617 + MLT1J LTR MaLR 5 495 -16 238 271 17 0 chr6 149236662 149236721 -33178521 - MER5A DNA MER1_type -6 183 124 1424 216 18 43 chr6 149236732 149237086 -33178156 + MLT2C1 LTR ERVL 2 363 -101 441 0 0 0 chr6 149237086 149237135 -33178107 + (CA)n Simple_repeat Simple_repeat 1 49 0 252 0 0 0 chr6 149237134 149237162 -33178080 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 1424 216 18 43 chr6 149237135 149237174 -33178068 + MLT2C1 LTR ERVL 363 424 -40 301 227 0 40 chr6 149237181 149237256 -33177986 + L1MC3 LINE L1 6588 6659 -1126 325 294 118 0 chr6 149237278 149237363 -33177879 - MER5A DNA MER1_type -84 105 11 346 367 20 0 chr6 149237390 149237537 -33177705 + MIR3 SINE MIR 40 189 -19 207 261 15 15 chr6 149238675 149238740 -33176502 + (TG)n Simple_repeat Simple_repeat 1 65 0 24 32 0 0 chr6 149239414 149239445 -33175797 + AT_rich Low_complexity Low_complexity 1 31 0 209 324 18 81 chr6 149241132 149241243 -33173999 - L2 LINE L2 -27 3245 3142 711 164 6 13 chr6 149244106 149244265 -33170977 + GA-rich Low_complexity Low_complexity 3 160 0 534 178 30 6 chr6 149244930 149245099 -33170143 + (CA)n Simple_repeat Simple_repeat 2 174 0 783 263 78 26 chr6 149246520 149246904 -33168338 - HAL1b LINE L1 -735 613 210 717 34 0 0 chr6 149247000 149247088 -33168154 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 240 273 27 3 chr6 149250530 149250621 -33164621 + MIR SINE MIR 63 154 -54 240 302 147 8 chr6 149251058 149251187 -33164055 - MIR SINE MIR 0 262 116 180 0 0 0 chr6 149252218 149252238 -33163004 + (T)n Simple_repeat Simple_repeat 1 20 0 220 289 127 56 chr6 149252296 149252438 -33162804 + L2 LINE L2 2939 3090 -182 324 218 239 11 chr6 149252632 149252828 -33162414 + LTR37B LTR ERV1 198 392 -34 285 269 60 67 chr6 149252880 149253014 -33162228 + L2 LINE L2 3179 3311 -2 222 214 0 0 chr6 149253611 149253653 -33161589 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 899 230 36 27 chr6 149254052 149254274 -33160968 - MER58A DNA MER1_type 0 224 1 2413 68 0 3 chr6 149254668 149254964 -33160278 - AluY SINE Alu -16 295 1 382 313 153 0 chr6 149255775 149255951 -33159291 - MIR SINE MIR -12 250 48 296 308 15 30 chr6 149256365 149256480 -33158762 - MER5A DNA MER1_type -4 174 59 2193 107 3 13 chr6 149257867 149258167 -33157075 - AluSg SINE Alu -13 297 1 1957 228 24 17 chr6 149258186 149258650 -33156592 - MLT1C LTR MaLR 0 467 1 348 325 42 0 chr6 149258754 149258874 -33156368 - MIR SINE MIR -50 212 88 345 336 72 18 chr6 149258881 149259104 -33156138 + L2 LINE L2 3005 3239 -74 262 191 0 0 chr6 149259292 149259334 -33155908 - L2 LINE L2 -92 3221 3180 227 288 0 14 chr6 149259663 149259736 -33155506 + L3 LINE CR1 1388 1459 -118 736 312 57 20 chr6 149260007 149260395 -33154847 + L2 LINE L2 2657 3068 -245 271 333 37 30 chr6 149260517 149260652 -33154590 + L2 LINE L2 3137 3272 0 835 241 42 9 chr6 149260972 149261184 -33154058 + MER20 DNA MER1_type 1 219 0 212 179 26 0 chr6 149261798 149261837 -33153405 + GA-rich Low_complexity Low_complexity 2 41 0 185 217 239 0 chr6 149261908 149261954 -33153288 - L3 LINE CR1 -1 1576 1520 199 93 47 0 chr6 149263614 149263657 -33151585 + (TA)n Simple_repeat Simple_repeat 1 45 0 311 213 8 98 chr6 149263661 149263783 -33151459 + L1MC4 LINE L1 6614 6724 -1318 2218 85 0 7 chr6 149264163 149264493 -33150749 + AluSc SINE Alu 1 328 0 210 37 0 0 chr6 149264641 149264668 -33150574 + (GGGAA)n Simple_repeat Simple_repeat 4 30 0 3132 145 19 0 chr6 149265341 149265818 -33149424 + THE1B-int LTR MaLR 1095 1580 0 2033 141 35 46 chr6 149265818 149266114 -33149128 + THE1B LTR MaLR 1 294 -70 2238 107 0 0 chr6 149266114 149266404 -33148838 - AluY SINE Alu -21 290 1 2033 141 35 46 chr6 149266404 149266475 -33148767 + THE1B LTR MaLR 294 364 0 4483 210 63 17 chr6 149266485 149267344 -33147898 - L1 LINE L1 -857 5289 4366 1900 95 91 0 chr6 149267344 149267607 -33147635 - AluY SINE Alu -24 287 1 4483 210 63 17 chr6 149267607 149267863 -33147379 - L1 LINE L1 -1780 4366 4123 * 5367 215 82 31 chr6 149267858 149268253 -33146989 + L1M1 LINE L1 2917 3291 -4274 1865 191 24 0 chr6 149268253 149268589 -33146653 - MER7A DNA MER2_type -1 345 4 5367 215 82 31 chr6 149268589 149269837 -33145405 + L1M1 LINE L1 3291 4691 -2874 1994 94 25 0 chr6 149269837 149270147 -33145095 + AluY SINE Alu 1 317 0 5367 215 82 31 chr6 149270147 149270584 -33144658 + L1M1 LINE L1 4691 5104 -2461 12420 127 30 15 chr6 149270707 149273054 -33142188 + Tigger1 DNA MER2_type 1 2377 -41 296 163 0 0 chr6 149273271 149273314 -33141928 + Tigger1 DNA MER2_type 2375 2417 -1 2220 248 58 42 chr6 149273472 149274200 -33141042 + L1M2 LINE L1 2 1126 -5722 4094 86 17 0 chr6 149274204 149274730 -33140512 + L1PA10 LINE L1 5629 6163 -5 201 167 24 0 chr6 149276091 149276133 -33139109 + (TG)n Simple_repeat Simple_repeat 2 44 0 1942 128 11 3 chr6 149276136 149276467 -33138775 - AluSx SINE Alu 0 333 1 2030 142 3 0 chr6 149282672 149282967 -33132275 - AluSq SINE Alu -17 296 1 2198 110 3 10 chr6 149285348 149285648 -33129594 - AluSx SINE Alu -14 298 1 21 36 0 0 chr6 149286676 149286704 -33128538 + AT_rich Low_complexity Low_complexity 1 28 0 2218 104 0 22 chr6 149286791 149287108 -33128134 - AluY SINE Alu -1 310 1 2311 75 3 28 chr6 149288532 149288851 -33126391 + AluY SINE Alu 1 311 0 199 256 256 22 chr6 149289217 149289354 -33125888 + MIR SINE MIR 21 189 -73 2253 101 10 7 chr6 149289480 149289786 -33125456 + AluSq SINE Alu 1 307 -6 399 315 78 17 chr6 149290326 149290558 -33124684 - MER41B LTR ERV1 -209 426 181 549 108 0 0 chr6 149291918 149291992 -33123250 - MLT1B LTR MaLR 0 390 317 3195 36 5 23 chr6 149292010 149292396 -33122846 - L1PA3 LINE L1 0 6155 5777 1773 172 12 15 chr6 149292396 149292728 -33122514 - MLT1B LTR MaLR -59 331 1 2229 114 0 10 chr6 149292782 149293090 -33122152 + AluSq SINE Alu 1 305 -8 468 0 0 0 chr6 149293435 149293487 -33121755 + (TA)n Simple_repeat Simple_repeat 2 53 0 3232 132 31 19 chr6 149294392 149294504 -33120738 - L1MA8 LINE L1 -172 6119 6008 1665 269 92 16 chr6 149294504 149295169 -33120073 - L1PA10 LINE L1 -161 6007 5293 1246 173 235 12 chr6 149295515 149295839 -33119403 + MSTD LTR MaLR 1 396 0 2334 190 7 17 chr6 149295892 149296308 -33118934 - LOR1b LTR ERV1 0 461 50 292 323 10 50 chr6 149296369 149296468 -33118774 - L2 LINE L2 -42 3230 3136 2446 89 0 0 chr6 149296710 149297012 -33118230 + AluSg SINE Alu 1 302 -8 1903 246 105 40 chr6 149297012 149297670 -33117572 + L1ME1 LINE L1 5462 6162 -4 206 143 61 0 chr6 149297683 149297732 -33117510 + (TA)n Simple_repeat Simple_repeat 2 53 0 2353 58 24 14 chr6 149297767 149298059 -33117183 - AluY SINE Alu -16 295 1 251 346 94 24 chr6 149298333 149298460 -33116782 - L2 LINE L2 0 3272 3137 2471 74 0 3 chr6 149298976 149299275 -33115967 + AluY SINE Alu 1 298 -13 2058 122 41 0 chr6 149300733 149301027 -33114215 + AluSp SINE Alu 1 306 -7 473 273 165 6 chr6 149301154 149301330 -33113912 + MIR SINE MIR 59 262 0 1965 195 14 11 chr6 149301508 149301872 -33113370 - MLT1A1 LTR MaLR 0 365 1 274 150 0 67 chr6 149302188 149302248 -33112994 + L1MB7 LINE L1 6128 6183 -1 5805 123 20 3 chr6 149302505 149303351 -33111891 - Tigger1 DNA MER2_type -1554 864 5 2285 99 10 13 chr6 149303352 149303666 -33111576 + AluSp SINE Alu 1 313 0 1404 258 15 46 chr6 149303666 149304209 -33111033 + L1M4 LINE L1 3104 3629 -2517 21 0 0 0 chr6 149304965 149304986 -33110256 + AT_rich Low_complexity Low_complexity 1 21 0 2148 112 0 7 chr6 149306241 149306545 -33108697 - AluSx SINE Alu -10 302 1 2269 87 19 22 chr6 149306778 149307089 -33108153 + AluY SINE Alu 1 310 -1 2243 111 0 0 chr6 149307613 149307911 -33107331 - AluSg SINE Alu -12 298 1 1660 244 41 22 chr6 149307912 149308376 -33106866 - L1M4 LINE L1 -816 5330 4858 517 327 8 40 chr6 149310239 149310487 -33104755 - MIR SINE MIR -11 251 12 690 192 40 8 chr6 149310603 149310728 -33104514 - FLAM_A SINE Alu -2 131 3 1982 135 3 40 chr6 149312443 149312768 -33102474 + MER44D DNA MER2_type 27 609 0 192 97 0 0 chr6 149313147 149313178 -33102064 + (TG)n Simple_repeat Simple_repeat 2 32 0 223 309 32 63 chr6 149314288 149314414 -33100828 - L2 LINE L2 0 3272 3151 27 29 0 0 chr6 149315378 149315412 -33099830 + AT_rich Low_complexity Low_complexity 1 34 0 269 293 38 19 chr6 149316061 149316167 -33099075 - MIR SINE MIR -43 219 112 288 229 49 0 chr6 149316393 149316454 -33098788 + L2 LINE L2 3250 3313 0 475 217 11 0 chr6 149316586 149316678 -33098564 + MER5A DNA MER1_type 13 105 -84 526 294 22 33 chr6 149316755 149316935 -33098307 + MER5B DNA MER1_type 1 178 0 2383 92 0 3 chr6 149317307 149317611 -33097631 - AluSx SINE Alu -9 303 1 760 233 6 28 chr6 149318194 149318374 -33096868 - MER5A DNA MER1_type -1 188 13 188 377 0 0 chr6 149318401 149318478 -33096764 + MIR SINE MIR 37 113 -149 381 237 31 10 chr6 149318542 149318639 -33096603 - MER5A DNA MER1_type -77 112 14 23 33 0 0 chr6 149318680 149318710 -33096532 + AT_rich Low_complexity Low_complexity 1 30 0 1375 159 28 110 chr6 149319688 149320014 -33095228 + AluJo SINE Alu 1 299 -13 220 211 19 0 chr6 149321721 149321773 -33093469 + CT-rich Low_complexity Low_complexity 2 54 0 21 36 0 0 chr6 149323367 149323395 -33091847 + AT_rich Low_complexity Low_complexity 1 28 0 455 304 16 0 chr6 149324166 149324291 -33090951 + MIR3 SINE MIR 82 208 0 198 328 172 17 chr6 149324581 149324697 -33090545 - MIR SINE MIR -71 191 58 21 0 0 0 chr6 149325562 149325583 -33089659 + AT_rich Low_complexity Low_complexity 1 21 0 2129 177 16 3 chr6 149327207 149327592 -33087650 + MLT1B LTR MaLR 1 390 0 224 215 31 15 chr6 149329396 149329461 -33085781 + MIR3 SINE MIR 143 208 0 22 0 0 0 chr6 149329896 149329918 -33085324 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 149331413 149331452 -33083790 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 149331745 149331766 -33083476 + AT_rich Low_complexity Low_complexity 1 21 0 259 89 18 18 chr6 149332680 149332736 -33082506 - L1MA4A LINE L1 -2 6301 6246 2049 130 7 0 chr6 149332931 149333239 -33082003 + AluSx SINE Alu 1 310 -2 1362 243 38 138 chr6 149333843 149333949 -33081293 - MER69B DNA AcHobo -1315 1211 1096 2008 112 6 43 chr6 149333949 149334271 -33080971 - AluSx SINE Alu -2 310 1 1362 243 38 138 chr6 149334271 149335202 -33080040 - MER69B DNA AcHobo -1430 1096 278 1020 261 95 47 chr6 149335206 149335778 -33079464 - MLT1H LTR MaLR -4 591 1 795 293 60 0 chr6 149335778 149336027 -33079215 - MER69B DNA AcHobo -945 281 18 515 351 67 33 chr6 149336077 149336467 -33078775 + L2 LINE L2 2464 2866 -448 330 259 138 26 chr6 149336484 149336600 -33078642 + L2 LINE L2 3185 3313 0 418 321 49 61 chr6 149338672 149338918 -33076324 + MIR SINE MIR 14 256 -6 261 235 126 8 chr6 149339598 149339717 -33075525 + MIR SINE MIR 66 198 -64 268 265 39 39 chr6 149339743 149339845 -33075397 + MLT1H1 LTR MaLR 1 102 -440 405 240 51 153 chr6 149340027 149340465 -33074777 + MLT1H1 LTR MaLR 157 555 0 244 333 121 66 chr6 149341238 149342273 -33072969 - L2 LINE L2 -412 2902 1811 2255 109 0 3 chr6 149342790 149343102 -33072140 - AluY SINE Alu 0 311 1 229 283 65 22 chr6 149343460 149343552 -33071690 - MIR SINE MIR -14 248 153 930 224 104 20 chr6 149344522 149344821 -33070421 + MER33 DNA MER1_type 1 324 0 2180 97 0 13 chr6 149345642 149345941 -33069301 - AluSc SINE Alu -14 295 1 365 349 9 4 chr6 149346145 149346374 -33068868 - L1ME4a LINE L1 -286 5835 5606 23 33 0 0 chr6 149346690 149346720 -33068522 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 149347168 149347204 -33068038 + AT_rich Low_complexity Low_complexity 1 36 0 360 298 127 20 chr6 149347482 149347734 -33067508 - L1ME4a LINE L1 -1850 4296 4018 383 147 0 13 chr6 149347819 149347894 -33067348 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 945 127 18 30 chr6 149348046 149348211 -33067031 - L1MC1 LINE L1 0 6333 6171 2461 180 21 77 chr6 149348240 149348823 -33066419 - L1MCa LINE L1 -5662 764 215 220 173 58 0 chr6 149349154 149349206 -33066036 + (TTG)n Simple_repeat Simple_repeat 3 57 0 21 0 0 0 chr6 149350205 149350226 -33065016 + AT_rich Low_complexity Low_complexity 1 21 0 587 270 35 18 chr6 149351901 149352120 -33063122 + MIR SINE MIR 3 224 -38 250 281 168 20 chr6 149353351 149353547 -33061695 - L1ME LINE L1 -367 5803 5579 985 197 57 31 chr6 149353621 149353849 -33061393 + MLT1A2 LTR MaLR 130 363 -11 256 241 87 49 chr6 149353857 149354087 -33061155 - L1ME LINE L1 -619 5551 5312 264 325 60 0 chr6 149354141 149354375 -33060867 - L1ME LINE L1 -932 5214 4967 306 291 170 63 chr6 149354591 149354955 -33060287 - L1ME LINE L1 -1492 4654 4252 469 331 89 37 chr6 149355066 149355447 -33059795 - L1ME LINE L1 -2061 4085 3685 929 228 97 35 chr6 149355717 149356097 -33059145 - MSTB2 LTR MaLR -3 438 1 2281 305 35 34 chr6 149356186 149357140 -33058102 + MER69 DNA AcHobo 187 1141 -1385 36529 91 10 12 chr6 149357264 149363424 -33051818 + L1PA6 LINE L1 11 6148 -6 407 274 107 0 chr6 149363449 149363617 -33051625 + MER69 DNA AcHobo 2126 2311 -215 1750 255 221 39 chr6 149363783 149364673 -33050569 - L1MC4 LINE L1 -95 7713 6734 2025 121 30 7 chr6 149364673 149364978 -33050264 - AluSx SINE Alu 0 312 1 1750 255 221 39 chr6 149364978 149365069 -33050173 - L1MC4 LINE L1 -1074 6734 6661 327 167 0 0 chr6 149365208 149365268 -33049974 + MER69 DNA AcHobo 2451 2510 -16 225 268 49 12 chr6 149365310 149365392 -33049850 + L2 LINE L2 3168 3252 -61 21 36 0 0 chr6 149365669 149365697 -33049545 + AT_rich Low_complexity Low_complexity 1 28 0 271 397 40 0 chr6 149365975 149366101 -33049141 - L2 LINE L2 -4 3268 3138 25 0 0 0 chr6 149366620 149366645 -33048597 + AT_rich Low_complexity Low_complexity 1 25 0 293 326 23 12 chr6 149367113 149367199 -33048043 - L2 LINE L2 -50 3222 3136 251 104 21 0 chr6 149367289 149367337 -33047905 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr6 149367415 149367437 -33047805 + AT_rich Low_complexity Low_complexity 1 22 0 195 352 0 0 chr6 149368074 149368128 -33047114 - L2 LINE L2 -4 3268 3215 337 282 29 96 chr6 149368197 149368406 -33046836 - MIR SINE MIR 0 262 68 999 172 76 48 chr6 149368449 149368699 -33046543 - L1MD3 LINE L1 -1 7994 7738 315 332 158 43 chr6 149368966 149369825 -33045417 - L2 LINE L2 -457 2857 1900 1333 254 85 36 chr6 149369840 149370368 -33044874 + L1MCb LINE L1 40 593 -5452 21 21 0 64 chr6 149370368 149370396 -33044846 + AT_rich Low_complexity Low_complexity 1 26 -18 2775 19 0 0 chr6 149370396 149370706 -33044536 + AluYb8 SINE Alu 1 310 -8 21 21 0 64 chr6 149370706 149370724 -33044518 + AT_rich Low_complexity Low_complexity 26 44 0 756 275 21 5 chr6 149371284 149371473 -33043769 + L1M2 LINE L1 1075 1266 -5583 381 267 8 46 chr6 149371514 149371645 -33043597 + L1 LINE L1 3971 4096 -2050 * 12721 197 52 5 chr6 149371639 149375092 -33040150 + L1M2 LINE L1 1280 5015 -1866 414 0 0 0 chr6 149375092 149375138 -33040104 + (TA)n Simple_repeat Simple_repeat 1 46 0 12721 197 52 5 chr6 149375138 149376307 -33038935 + L1M2 LINE L1 5015 6128 -753 310 250 0 0 chr6 149376298 149376386 -33038856 + L1M4 LINE L1 2944 3031 -3115 * 551 293 69 29 chr6 149376884 149377130 -33038112 + L2 LINE L2 2450 2705 -609 6853 161 27 24 chr6 149377190 149379492 -33035750 + L1MA3 LINE L1 3997 6305 0 381 342 68 18 chr6 149380147 149380384 -33034858 - MIR SINE MIR -3 259 13 2380 89 0 3 chr6 149380552 149380865 -33034377 - AluSq SINE Alu -1 312 1 2402 42 0 17 chr6 149383067 149383400 -33031842 + AluY SINE Alu 1 328 0 21 57 0 0 chr6 149383408 149383443 -33031799 + AT_rich Low_complexity Low_complexity 1 35 0 395 256 97 28 chr6 149383752 149384025 -33031217 + L1ME4a LINE L1 5808 6121 0 993 135 92 39 chr6 149384048 149384255 -33030987 + MER20 DNA MER1_type 2 219 0 234 263 44 53 chr6 149384269 149384383 -33030859 + L1ME LINE L1 5737 5849 -272 304 143 29 0 chr6 149384722 149384792 -33030450 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1267 232 154 2 chr6 149385887 149386348 -33028894 - L1MCa LINE L1 -3979 2585 2055 2043 250 54 65 chr6 149386358 149387185 -33028057 - L1MCa LINE L1 -5227 818 1 21 36 0 0 chr6 149387710 149387738 -33027504 + AT_rich Low_complexity Low_complexity 1 28 0 2350 181 149 22 chr6 149388095 149388638 -33026604 - LTR9 LTR ERV1 0 612 1 30 69 0 0 chr6 149388654 149388712 -33026530 + AT_rich Low_complexity Low_complexity 1 58 0 2793 250 63 29 chr6 149389033 149390251 -33024991 + L1M4 LINE L1 2683 3942 -2204 4747 138 10 31 chr6 149390299 149391210 -33024032 - pTR5 LTR ERV1 -800 1638 747 409 263 21 47 chr6 149391210 149391406 -33023836 - L1PA12 LINE L1 -5929 1652 1247 288 209 73 9 chr6 149391465 149391575 -33023667 + L1MA10 LINE L1 6217 6333 -1 2630 17 0 0 chr6 149392160 149392451 -33022791 - AluYa5 SINE Alu -2 309 19 24 0 0 0 chr6 149393588 149393612 -33021630 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr6 149395085 149395118 -33020124 + AT_rich Low_complexity Low_complexity 1 33 0 516 205 38 20 chr6 149395271 149395301 -33019941 - MLT1A2 LTR MaLR 0 388 360 1485 106 5 0 chr6 149395301 149395499 -33019743 + AluSp SINE Alu 99 297 -16 516 205 38 20 chr6 149395499 149395593 -33019649 - MLT1A2 LTR MaLR -28 360 263 1690 160 45 68 chr6 149395965 149396178 -33019064 - MLT1B LTR MaLR 0 390 189 240 35 0 0 chr6 149396178 149396207 -33019035 + (TG)n Simple_repeat Simple_repeat 2 30 0 1690 160 45 68 chr6 149396207 149396392 -33018850 - MLT1B LTR MaLR -201 189 1 1944 150 55 0 chr6 149397095 149397421 -33017821 + MER7A DNA MER2_type 2 343 -3 186 133 0 0 chr6 149397747 149397777 -33017465 + (T)n Simple_repeat Simple_repeat 1 30 0 197 340 131 26 chr6 149398149 149398302 -33016940 - MIR SINE MIR -93 169 1 2445 167 54 16 chr6 149398722 149399152 -33016090 + Tigger7 DNA MER2_type 1 413 -2074 4548 94 0 0 chr6 149399152 149399777 -33015465 + L1PA13 LINE L1 5539 6163 0 2445 167 54 16 chr6 149399777 149399805 -33015437 + Tigger7 DNA MER2_type 413 438 -2049 2015 108 0 0 chr6 149399805 149400112 -33015130 + AluSg SINE Alu 14 320 0 2445 167 54 16 chr6 149400112 149400204 -33015038 + Tigger7 DNA MER2_type 438 2486 -1 1770 183 0 0 chr6 149400481 149400770 -33014472 - AluJb SINE Alu -23 289 1 471 150 125 0 chr6 149401145 149401225 -33014017 - 5S rRNA rRNA -31 90 1 2204 123 125 13 chr6 149401451 149401834 -33013408 - MSTA LTR MaLR 0 428 3 281 238 38 38 chr6 149402281 149402441 -33012801 + (TCTA)n Simple_repeat Simple_repeat 2 161 0 43 47 0 0 chr6 149403617 149403681 -33011561 + AT_rich Low_complexity Low_complexity 1 64 0 7016 38 0 2 chr6 149404039 149404924 -33010318 - L1P LINE L1 -2328 3818 2936 9387 31 7 0 chr6 149404925 149406819 -33008423 + L1PA3 LINE L1 4256 6155 0 32 75 0 0 chr6 149407087 149407154 -33008088 + AT_rich Low_complexity Low_complexity 1 67 0 510 314 69 0 chr6 149407961 149408149 -33007093 - MIR SINE MIR -55 207 7 3543 193 58 41 chr6 149408413 149409315 -33005927 - L1MB4 LINE L1 -6 6174 5258 1268 73 14 73 chr6 149409329 149409548 -33005694 + L1MA5A LINE L1 6089 6294 -3 407 196 0 0 chr6 149409559 149409651 -33005591 + L1M4 LINE L1 5152 5243 -903 741 318 53 4 chr6 149409711 149409956 -33005286 + MIR SINE MIR 6 262 0 180 0 0 0 chr6 149410243 149410263 -33004979 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 324 322 66 9 chr6 149410920 149411131 -33004111 - L1MDa LINE L1 -3069 3060 2838 294 290 58 26 chr6 149411383 149411538 -33003704 - L1MDa LINE L1 -3526 2603 2444 480 280 65 20 chr6 149412202 149412577 -33002665 - L1MDa LINE L1 -861 1629 1300 293 274 131 66 chr6 149412618 149412748 -33002494 - L1MDa LINE L1 -4864 1255 1135 1880 150 94 24 chr6 149412748 149413088 -33002154 - THE1B LTR MaLR 0 364 1 11705 98 2 4 chr6 149413088 149414671 -33000571 - THE1B-int LTR MaLR 0 1580 1 1740 138 86 78 chr6 149414671 149414861 -33000381 - THE1B LTR MaLR 0 364 177 2023 122 24 7 chr6 149414861 149415155 -33000087 - AluSx SINE Alu -11 301 3 1740 138 86 78 chr6 149415155 149415180 -33000062 - THE1B LTR MaLR -187 177 154 2341 80 0 29 chr6 149415180 149415492 -32999750 + AluY SINE Alu 1 303 -8 1740 138 86 78 chr6 149415492 149415636 -32999606 - THE1B LTR MaLR -210 154 1 293 274 131 66 chr6 149415636 149415777 -32999465 - L1MDa LINE L1 -4983 1136 964 419 295 91 62 chr6 149415900 149416141 -32999101 + L1ME3A LINE L1 5777 6024 -146 446 315 126 51 chr6 149416305 149416838 -32998404 - L1MDa LINE L1 -5223 896 324 1737 171 48 0 chr6 149417379 149417671 -32997571 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr6 149419223 149419244 -32995998 + AT_rich Low_complexity Low_complexity 1 21 0 2010 142 7 0 chr6 149419958 149419971 -32995271 - AluSx SINE Alu -12 300 289 393 39 0 0 chr6 149419971 149420022 -32995220 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2010 142 7 0 chr6 149420022 149420304 -32994938 - AluSx SINE Alu -23 289 3 25 0 0 0 chr6 149420363 149420388 -32994854 + AT_rich Low_complexity Low_complexity 1 25 0 1297 171 104 49 chr6 149420512 149420799 -32994443 - AluJo SINE Alu -9 303 1 288 281 86 43 chr6 149421010 149421149 -32994093 - L2 LINE L2 -8 3305 3161 369 264 39 39 chr6 149421458 149421587 -32993655 - MER94 DNA DNA -5 129 1 1968 150 3 10 chr6 149421786 149422099 -32993143 + AluSp SINE Alu 1 311 -2 770 304 103 27 chr6 149422357 149422840 -32992402 - LTR33 LTR ERVL -1 520 1 241 337 70 64 chr6 149423476 149423663 -32991579 + MLT1K LTR MaLR 27 214 -374 651 200 0 0 chr6 149424342 149424452 -32990790 - MLT1A2 LTR MaLR -261 113 4 931 201 29 57 chr6 149424584 149424828 -32990414 + MLT1A2 LTR MaLR 138 374 0 21 0 0 0 chr6 149425372 149425393 -32989849 + AT_rich Low_complexity Low_complexity 1 21 0 458 335 13 6 chr6 149426111 149426269 -32988973 - L3 LINE CR1 -14 1563 1405 236 348 80 36 chr6 149426300 149426438 -32988804 + L2 LINE L2 3126 3269 -3 265 332 28 54 chr6 149426937 149427137 -32988105 + MIR3 SINE MIR 2 195 -64 10345 250 20 10 chr6 149427358 149429880 -32985362 + L1PA16 LINE L1 1354 3851 -2946 2018 124 69 23 chr6 149429880 149430228 -32985014 + THE1B LTR MaLR 1 364 0 10797 108 25 6 chr6 149430228 149431779 -32983463 + THE1B-int LTR MaLR 1 1580 0 1967 117 94 29 chr6 149431779 149432121 -32983121 + THE1B LTR MaLR 1 364 0 10345 250 20 10 chr6 149432121 149433310 -32981932 + L1PA16 LINE L1 3850 5129 -1668 3387 137 31 15 chr6 149433318 149433866 -32981376 - MER41-int LTR ERV1 -4310 1636 1080 1472 150 9 9 chr6 149433855 149434088 -32981154 - MER41-int LTR ERV1 -5311 635 403 * 690 139 8 16 chr6 149434062 149434184 -32981058 + MER41A-int LTR ERV1 720 840 -4377 * 425 211 73 9 chr6 149434187 149434296 -32980946 + MER41A-int LTR ERV1 1902 2017 -3929 * 2993 142 34 5 chr6 149434288 149435005 -32980237 + MER41A-int LTR ERV1 2163 2946 -3000 * 11258 113 44 25 chr6 149434992 149436156 -32979086 + MER41A-int LTR ERV1 2856 3997 -1949 1715 148 0 0 chr6 149436156 149436412 -32978830 - AluSg SINE Alu -3 307 52 11258 113 44 25 chr6 149436412 149437486 -32977756 + MER41A-int LTR ERV1 3997 5944 -2 3224 115 9 0 chr6 149437486 149437948 -32977294 + MER41A LTR ERV1 1 466 -88 4628 160 43 9 chr6 149437956 149439614 -32975628 + L1PA16 LINE L1 5131 6817 0 23 0 0 0 chr6 149439918 149439941 -32975301 + AT_rich Low_complexity Low_complexity 1 23 0 4078 187 18 46 chr6 149440038 149440385 -32974857 + L1MB5 LINE L1 4961 5316 -858 2061 125 10 33 chr6 149440385 149440690 -32974552 + AluSx SINE Alu 1 298 -14 4078 187 18 46 chr6 149440690 149441576 -32973666 + L1MB5 LINE L1 5316 6166 -8 22 0 0 0 chr6 149442401 149442423 -32972819 + AT_rich Low_complexity Low_complexity 1 22 0 320 180 0 0 chr6 149442652 149442713 -32972529 - MER116 DNA Mariner -7 73 13 290 344 104 59 chr6 149442944 149443319 -32971923 - MLT1K LTR MaLR -195 393 2 904 265 20 13 chr6 149443500 149443895 -32971347 - L1MD2 LINE L1 -16 6343 5897 2701 215 31 34 chr6 149443900 149444879 -32970363 - L1MD2 LINE L1 -13 6143 5127 364 213 0 0 chr6 149444879 149444959 -32970283 - L1MD2 LINE L1 -972 5174 5095 334 200 105 0 chr6 149444980 149445085 -32970157 + L1M4 LINE L1 4949 5064 -1082 23 33 0 0 chr6 149445120 149445150 -32970092 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 149445772 149445793 -32969449 + AT_rich Low_complexity Low_complexity 1 21 0 185 233 23 23 chr6 149447835 149447878 -32967364 - MIR SINE MIR -56 152 110 4050 130 47 45 chr6 149448223 149449005 -32966237 + LTR1 LTR ERV1 1 784 -1 181 192 233 14 chr6 149449006 149449079 -32966163 + MIR SINE MIR 74 162 -100 1815 158 82 15 chr6 149449247 149449589 -32965653 + MLT1A1 LTR MaLR 1 365 0 283 290 0 0 chr6 149449752 149449814 -32965428 - MIR SINE MIR -117 91 30 29 47 0 0 chr6 149450163 149450206 -32965036 + AT_rich Low_complexity Low_complexity 1 43 0 247 299 39 0 chr6 149450689 149450788 -32964454 - MIR SINE MIR -41 167 59 23 0 0 0 chr6 149451286 149451309 -32963933 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr6 149451474 149451502 -32963740 + AT_rich Low_complexity Low_complexity 1 28 0 289 276 63 47 chr6 149451649 149451776 -32963466 + MER5A DNA MER1_type 55 183 -6 2260 91 0 0 chr6 149453014 149453301 -32961941 + AluSx SINE Alu 1 287 -25 233 206 0 27 chr6 149453834 149453907 -32961335 + (TGGA)n Simple_repeat Simple_repeat 3 73 0 252 0 0 0 chr6 149454168 149454196 -32961046 + (TG)n Simple_repeat Simple_repeat 1 28 0 238 305 19 9 chr6 149455359 149455464 -32959778 - Charlie8 DNA MER1_type -2233 184 79 4458 195 24 27 chr6 149455831 149457218 -32958024 - L1MB5 LINE L1 -1 6671 5287 276 329 0 0 chr6 149457219 149457292 -32957950 - MER39 LTR ERV1 0 707 635 358 258 0 22 chr6 149457300 149457389 -32957853 - MER39 LTR ERV1 -616 91 5 917 271 8 0 chr6 149457390 149457637 -32957605 - L1MB5 LINE L1 -1355 5289 5041 332 301 41 8 chr6 149457787 149457910 -32957332 - L1MB5 LINE L1 -6066 476 350 4293 199 26 13 chr6 149457948 149459259 -32955983 - L1PB4 LINE L1 -7 6851 5517 4441 221 26 15 chr6 149459264 149460799 -32954443 - L1PB4 LINE L1 -3605 3243 1695 2380 309 23 92 chr6 149460788 149462311 -32952931 - L1PB4 LINE L1 -5420 1429 12 * 444 309 56 32 chr6 149462379 149462631 -32952611 - L1MB5 LINE L1 -6271 271 14 296 338 79 35 chr6 149462825 149463115 -32952127 - L3b LINE CR1 -133 1450 1148 2231 114 0 0 chr6 149463394 149463693 -32951549 - AluSx SINE Alu -12 300 2 771 325 72 11 chr6 149464060 149464436 -32950806 + LTR16B LTR ERVL 64 462 -2 195 310 113 0 chr6 149464548 149464619 -32950623 + MIR SINE MIR 102 180 -82 235 164 18 0 chr6 149464712 149464767 -32950475 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 310 331 38 15 chr6 149465145 149465278 -32949964 + MIR3 SINE MIR 55 190 -18 2146 122 0 0 chr6 149465393 149465713 -32949529 - AluSq SINE Alu 0 320 1 442 280 7 33 chr6 149467409 149467559 -32947683 - MIR SINE MIR 0 262 117 255 376 17 17 chr6 149468404 149468521 -32946721 + MIR3 SINE MIR 87 203 -5 402 282 91 32 chr6 149468769 149468989 -32946253 + MLT1L LTR MaLR 379 611 -4 236 264 32 140 chr6 149469755 149470005 -32945237 - L3 LINE CR1 -16 1561 1339 461 319 60 46 chr6 149470007 149470292 -32944950 - L3 LINE CR1 -1055 522 234 839 263 28 12 chr6 149470610 149470857 -32944385 + MER63C DNA MER1_type 159 409 -521 1574 219 92 15 chr6 149471057 149471536 -32943706 + MER63C DNA MER1_type 414 929 -1 530 287 67 56 chr6 149471698 149471893 -32943349 + MIR SINE MIR 65 261 -1 483 307 203 32 chr6 149471897 149472369 -32942873 - L2 LINE L2 -572 2742 2190 23247 95 14 39 chr6 149472377 149478774 -32936468 + L1PA7 LINE L1 12 6149 -5 310 185 87 54 chr6 149478893 149478985 -32936257 - MIR SINE MIR -109 153 59 324 240 0 0 chr6 149479197 149479318 -32935924 + GA-rich Low_complexity Low_complexity 1 121 0 197 270 127 0 chr6 149480314 149480377 -32934865 - MIR SINE MIR -117 145 75 21 57 0 0 chr6 149480993 149481028 -32934214 + AT_rich Low_complexity Low_complexity 1 35 0 1008 267 53 52 chr6 149481423 149481868 -32933374 - L1ME LINE L1 -459 6097 5649 444 281 149 62 chr6 149482045 149482730 -32932512 - L1MEc LINE L1 -4501 2039 1307 36 0 0 0 chr6 149482889 149482925 -32932317 + AT_rich Low_complexity Low_complexity 1 36 0 1890 153 7 0 chr6 149482925 149483206 -32932036 - AluSx SINE Alu -24 288 6 21 57 0 0 chr6 149483216 149483251 -32931991 + AT_rich Low_complexity Low_complexity 1 35 0 546 275 31 59 chr6 149483786 149484008 -32931234 - MLT1E3 LTR MaLR -13 611 396 1143 301 26 3 chr6 149484028 149484377 -32930865 + LTR41 LTR ERVL 340 696 -77 2402 57 0 7 chr6 149484450 149484749 -32930493 + AluY SINE Alu 1 297 -14 1281 214 7 31 chr6 149484753 149485042 -32930200 - AluJo SINE Alu -30 282 1 237 234 0 0 chr6 149485651 149485698 -32929544 + L1ME LINE L1 5586 5632 -532 254 343 73 0 chr6 149485714 149485851 -32929391 + L1ME LINE L1 5713 5859 -311 2001 128 0 23 chr6 149486360 149486664 -32928578 - AluSx SINE Alu -15 297 1 357 24 0 0 chr6 149487588 149487630 -32927612 + (GA)n Simple_repeat Simple_repeat 1 42 0 186 396 73 10 chr6 149487656 149487752 -32927490 - MIR SINE MIR -90 118 17 220 353 78 18 chr6 149487753 149487920 -32927322 - L2 LINE L2 -578 2736 2560 589 154 4 225 chr6 149489033 149489273 -32925969 - MER8 DNA MER2_type -4 235 49 204 182 0 0 chr6 149489301 149489345 -32925897 + (TA)n Simple_repeat Simple_repeat 1 44 0 1958 171 21 71 chr6 149489371 149489791 -32925451 - MLT2C2 LTR ERVL -63 401 3 216 0 0 0 chr6 149489946 149489970 -32925272 + (T)n Simple_repeat Simple_repeat 1 24 0 246 192 0 0 chr6 149490422 149490474 -32924768 + A-rich Low_complexity Low_complexity 1 52 0 1101 45 0 15 chr6 149490769 149490903 -32924339 - AluY SINE Alu -179 132 1 270 410 17 0 chr6 149491200 149491373 -32923869 + ERVL LTR ERVL 1521 1696 -4068 278 221 39 26 chr6 149491589 149491666 -32923576 + ERVL LTR ERVL 1894 1971 -3793 1280 347 82 27 chr6 149492378 149493526 -32921716 + ERVL LTR ERVL 2978 4250 -1514 2299 104 0 0 chr6 149493526 149493834 -32921408 - AluSc SINE Alu -1 308 1 1280 347 82 27 chr6 149493834 149494029 -32921213 + ERVL LTR ERVL 4250 4433 -1331 411 38 0 0 chr6 149494049 149494102 -32921140 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 701 179 0 0 chr6 149494106 149494223 -32921019 - FLAM_C SINE Alu -20 123 7 400 316 55 71 chr6 149494304 149494614 -32920628 + ERVL LTR ERVL 4505 4809 -955 1850 171 119 16 chr6 149495108 149495493 -32919749 - MSTA LTR MaLR 0 428 4 311 283 65 0 chr6 149495923 149496015 -32919227 + LTR67 LTR ERVL 396 493 -64 257 278 0 0 chr6 149497973 149498027 -32917215 + polypyrimidine Low_complexity Low_complexity 3 56 0 31 68 0 0 chr6 149498387 149498446 -32916796 + AT_rich Low_complexity Low_complexity 1 59 0 508 16 0 16 chr6 149500023 149500084 -32915158 - LTR7 LTR ERV1 -2 448 389 2379 75 116 5 chr6 149500202 149500574 -32914668 - LTR7 LTR ERV1 -37 413 1 2405 82 48 19 chr6 149500574 149500953 -32914289 - HERVH LTR ERV1 0 7713 7324 1313 123 38 0 chr6 149500953 149501165 -32914077 - HERVH LTR ERV1 -1894 5819 5600 4253 133 22 1 chr6 149501166 149501815 -32913427 - HERVH LTR ERV1 -2564 5149 4488 3333 107 4 4 chr6 149501817 149502311 -32912931 - HERVH LTR ERV1 -3720 3993 3500 724 172 41 0 chr6 149502310 149502455 -32912787 - HERVH LTR ERV1 -4423 3290 3140 * 18306 104 46 12 chr6 149502449 149505339 -32909903 - HERVH LTR ERV1 -4726 2987 1 2738 78 95 5 chr6 149505341 149505752 -32909490 - LTR7 LTR ERV1 -2 448 1 226 300 70 84 chr6 149505943 149506170 -32909072 + L2 LINE L2 2266 2489 -825 432 243 27 18 chr6 149506282 149506393 -32908849 + MIR SINE MIR 20 131 -131 260 267 91 39 chr6 149506878 149507067 -32908175 + L1 LINE L1 3480 3680 -2466 237 188 43 29 chr6 149507059 149507128 -32908114 - L1MDa LINE L1 -1073 5467 5398 * 4356 243 85 75 chr6 149507212 149507434 -32907808 - L1MDa LINE L1 -1199 5341 5123 1685 159 25 0 chr6 149507434 149507710 -32907532 + AluJb SINE Alu 14 296 -16 4356 243 85 75 chr6 149507710 149508901 -32906341 - L1MDa LINE L1 -1417 5123 3946 398 52 0 17 chr6 149508901 149508959 -32906283 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 4356 243 85 75 chr6 149508959 149509046 -32906196 - L1MDa LINE L1 -2594 3946 3861 2511 40 0 13 chr6 149509046 149509347 -32905895 - AluY SINE Alu -14 297 1 4356 243 85 75 chr6 149509347 149509984 -32905258 - L1MDa LINE L1 -2679 3861 3232 1855 127 41 0 chr6 149509984 149510285 -32904957 - AluSg SINE Alu 0 312 1 4356 243 85 75 chr6 149510285 149510995 -32904247 - L1MDa LINE L1 -3308 3232 2462 343 165 38 0 chr6 149511495 149511574 -32903668 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 29 28 0 0 chr6 149511632 149511668 -32903574 + AT_rich Low_complexity Low_complexity 1 36 0 33 25 0 0 chr6 149512304 149512344 -32902898 + AT_rich Low_complexity Low_complexity 1 40 0 498 230 45 51 chr6 149512936 149513114 -32902128 + LTR40c LTR ERVL 1 177 -288 1209 207 117 27 chr6 149513207 149513540 -32901702 + MLT1A2 LTR MaLR 1 363 -11 648 285 24 19 chr6 149513549 149513756 -32901486 + LTR40b LTR ERVL 254 461 -1 219 167 0 0 chr6 149513802 149513844 -32901398 + (ATG)n Simple_repeat Simple_repeat 1 42 0 234 268 98 12 chr6 149513976 149514058 -32901184 - L2 LINE L2 -583 2731 2643 365 311 39 20 chr6 149516018 149516272 -32898970 + L1ME4a LINE L1 5582 5840 -281 399 113 0 0 chr6 149516617 149516679 -32898563 + (TG)n Simple_repeat Simple_repeat 2 63 0 200 354 0 0 chr6 149517018 149517083 -32898159 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 290 321 132 0 chr6 149518501 149518607 -32896635 - L3 LINE CR1 -897 680 561 188 240 20 40 chr6 149518641 149518691 -32896551 - L2 LINE L2 -12 3260 3212 356 356 56 26 chr6 149518693 149518926 -32896316 + MIR SINE MIR 7 246 -16 258 241 174 47 chr6 149519159 149519412 -32895830 - L1MC4a LINE L1 -1845 5963 5679 288 247 0 43 chr6 149519445 149519538 -32895704 + (CATATA)n Simple_repeat Simple_repeat 3 91 0 342 385 15 15 chr6 149519538 149519738 -32895504 - L1MC4a LINE L1 -2119 5689 5490 25 51 0 0 chr6 149519831 149519870 -32895372 + AT_rich Low_complexity Low_complexity 1 39 0 342 331 96 35 chr6 149520019 149520385 -32894857 - L1MC4a LINE L1 -1087 5059 4672 296 320 56 44 chr6 149520526 149520813 -32894429 - L1MC4a LINE L1 -1807 4339 4057 635 239 39 6 chr6 149520813 149520993 -32894249 - MER5A DNA MER1_type -1 188 3 296 320 56 44 chr6 149520993 149521274 -32893968 - L1MC4a LINE L1 -2089 4057 3764 1109 279 78 5 chr6 149521564 149522144 -32893098 + L1MC2 LINE L1 2861 3481 -2665 * 4617 228 46 24 chr6 149522137 149523715 -32891527 + L1MC2 LINE L1 3688 5354 -990 2023 117 55 0 chr6 149523715 149524006 -32891236 + AluSg SINE Alu 1 307 -3 4617 228 46 24 chr6 149524006 149524830 -32890412 + L1MC2 LINE L1 5354 6158 -186 2136 106 0 0 chr6 149525055 149525373 -32889869 + AluSq SINE Alu 1 318 0 414 279 8 16 chr6 149526534 149526656 -32888586 + MER63 DNA MER1_type 14 760 -302 671 229 7 0 chr6 149529097 149529128 -32886114 - FRAM SINE Alu -137 175 146 825 65 0 0 chr6 149529128 149529236 -32886006 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 671 229 7 0 chr6 149529236 149529348 -32885894 - FRAM SINE Alu -166 146 31 300 70 0 0 chr6 149529634 149529677 -32885565 + (TG)n Simple_repeat Simple_repeat 1 43 0 1220 196 126 15 chr6 149530854 149531195 -32884047 - L1ME1 LINE L1 -2 6164 5786 6012 221 154 23 chr6 149532695 149534327 -32880915 + L1MA4A LINE L1 3 1848 -5361 * 8038 199 47 13 chr6 149534319 149536862 -32878380 + L1MA4A LINE L1 2669 5300 -1908 513 138 62 0 chr6 149536862 149537007 -32878235 + (TA)n Simple_repeat Simple_repeat 1 154 0 1407 189 8 0 chr6 149537007 149537250 -32877992 - AluJb SINE Alu -21 291 47 5517 162 42 7 chr6 149537253 149539276 -32875966 + L1MA4A LINE L1 5277 7364 -1 32 86 0 0 chr6 149540670 149540751 -32874491 + AT_rich Low_complexity Low_complexity 1 81 0 1998 139 10 13 chr6 149541999 149542308 -32872934 - AluSg SINE Alu -2 308 1 335 288 108 45 chr6 149543698 149543920 -32871322 - MIR SINE MIR -21 241 6 1963 165 73 34 chr6 149544041 149544478 -32870764 + MER4B LTR ERV1 1 454 -156 1160 140 13 39 chr6 149544478 149544707 -32870535 + MER61C LTR ERV1 212 434 0 1082 143 0 0 chr6 149544707 149544868 -32870374 + MER4E LTR ERV1 619 779 0 2342 110 0 0 chr6 149545071 149545381 -32869861 + AluSg SINE Alu 1 310 0 1657 174 185 45 chr6 149546143 149546809 -32868433 - LTR1B LTR ERV1 -8 818 2 195 322 124 8 chr6 149547549 149547670 -32867572 + L2 LINE L2 3176 3310 -3 27 0 0 0 chr6 149547736 149547763 -32867479 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr6 149547904 149547938 -32867304 + AT_rich Low_complexity Low_complexity 1 34 0 283 320 72 0 chr6 149548123 149548248 -32866994 + MIR3 SINE MIR 32 165 -43 1776 175 0 14 chr6 149548447 149548744 -32866498 + AluJb SINE Alu 3 295 -17 21 0 0 0 chr6 149548876 149548897 -32866345 + AT_rich Low_complexity Low_complexity 1 21 0 1080 246 78 6 chr6 149549041 149549402 -32865840 + L1ME1 LINE L1 4902 5288 -858 1075 247 32 37 chr6 149549401 149549778 -32865464 + L1ME1 LINE L1 5787 6161 -5 * 354 312 32 61 chr6 149550238 149550485 -32864757 + L1ME LINE L1 308 547 -5572 356 315 77 53 chr6 149550494 149551063 -32864179 + L1ME LINE L1 673 1255 -4864 2197 119 9 0 chr6 149551172 149551500 -32863742 + HSMAR2 DNA Mariner 2 332 -970 1032 78 0 0 chr6 149551511 149551640 -32863602 - AluY SINE Alu -182 129 1 5251 154 19 29 chr6 149551641 149552630 -32862612 + HSMAR2 DNA Mariner 323 1301 -1 1061 88 0 0 chr6 149553113 149553250 -32861992 - AluSp/q SINE Alu -12 301 165 843 261 35 0 chr6 149553268 149553467 -32861775 + MIR SINE MIR 28 233 -29 331 261 74 120 chr6 149553552 149554698 -32860544 + L1ME LINE L1 3609 4701 -1428 1724 163 42 55 chr6 149554821 149555201 -32860041 - THE1C LTR MaLR 0 375 1 8710 147 17 58 chr6 149555202 149556846 -32858396 - THE1C-int LTR MaLR -1 1579 4 1741 128 63 84 chr6 149556849 149557232 -32858010 - THE1C LTR MaLR 0 375 1 195 183 0 42 chr6 149557239 149557310 -32857932 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 315 0 0 0 chr6 149557345 149557380 -32857862 + (TG)n Simple_repeat Simple_repeat 1 35 0 749 181 132 0 chr6 149557619 149557763 -32857479 - FRAM SINE Alu -14 162 1 372 285 81 19 chr6 149557796 149558027 -32857215 + L1ME LINE L1 5159 5410 -735 764 286 50 17 chr6 149558034 149558316 -32856926 + MLT1G LTR MaLR 10 298 -257 407 245 0 20 chr6 149558384 149558486 -32856756 + MLT1G LTR MaLR 491 590 0 285 318 119 13 chr6 149558495 149558806 -32856436 + L1ME LINE L1 5417 5760 -385 237 196 87 0 chr6 149558830 149558876 -32856366 + L2 LINE L2 3264 3313 0 407 370 115 12 chr6 149559184 149559592 -32855650 - L2 LINE L2 -563 2751 2302 247 304 98 0 chr6 149560018 149560110 -32855132 + L2 LINE L2 3213 3313 0 358 266 39 16 chr6 149561701 149561829 -32853413 + MER94 DNA DNA 4 134 0 28 29 0 0 chr6 149562638 149562673 -32852569 + AT_rich Low_complexity Low_complexity 1 35 0 491 298 83 41 chr6 149565264 149565687 -32849555 - MLT1I LTR MaLR -5 427 1 28 29 0 0 chr6 149566412 149566447 -32848795 + AT_rich Low_complexity Low_complexity 1 35 0 231 36 0 0 chr6 149566808 149566836 -32848406 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2883 242 86 32 chr6 149566909 149567650 -32847592 - MER21B LTR ERV1 -82 781 1 449 327 157 0 chr6 149568002 149568225 -32847017 - MIR SINE MIR 0 262 5 1475 169 28 10 chr6 149568360 149568650 -32846592 - L1PA13 LINE L1 0 6163 5869 225 315 161 7 chr6 149568680 149568823 -32846419 - L2 LINE L2 -938 2376 2212 637 244 15 9 chr6 149569066 149569229 -32846013 - MER52A LTR ERV1 -4 1225 340 712 218 14 198 chr6 149569237 149569530 -32845712 - LTR28 LTR ERV1 -840 180 1 21238 114 6 15 chr6 149569531 149572594 -32842648 - LTR28-int LTR ERV1 -3 7088 4052 1969 171 43 40 chr6 149572594 149573156 -32842086 - MLT2A2 LTR ERVL 0 554 1 32739 99 15 4 chr6 149573156 149578751 -32836491 - HERVL-A2 LTR ERVL 0 5654 1 1564 211 57 32 chr6 149578751 149579301 -32835941 - MLT2A2 LTR ERVL 0 554 1 15911 203 13 20 chr6 149579301 149581731 -32833511 - MER61D-int LTR ERV1 -417 2671 1332 4483 53 4 0 chr6 149581731 149582292 -32832950 - L1PA7 LINE L1 -3 6151 5589 15911 203 13 20 chr6 149582292 149583616 -32831626 - MER61D-int LTR ERV1 -1756 1332 1 544 241 50 53 chr6 149583717 149583937 -32831305 - MER61D LTR ERV1 -10 491 340 818 215 10 167 chr6 149583945 149584238 -32831004 - LTR28 LTR ERV1 -855 165 1 21 36 0 0 chr6 149585202 149585230 -32830012 + AT_rich Low_complexity Low_complexity 1 28 0 232 373 93 0 chr6 149587328 149587446 -32827796 - L2 LINE L2 -186 3086 2958 238 319 35 42 chr6 149587588 149587732 -32827510 - L2 LINE L2 -527 2787 2645 1798 179 10 60 chr6 149590234 149590637 -32824605 - MER89 LTR ERV1 -2 557 175 186 43 0 0 chr6 149592808 149592831 -32822411 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 345 346 98 17 chr6 149593181 149593549 -32821693 + L2 LINE L2 2645 3049 -264 905 280 42 48 chr6 149593550 149594075 -32821167 + L1ME LINE L1 4089 4610 -1536 245 318 39 67 chr6 149594204 149594383 -32820859 + L1ME3A LINE L1 5954 6127 -43 291 312 21 16 chr6 149594498 149594684 -32820558 + L1MC4 LINE L1 7715 7901 -141 27 29 0 0 chr6 149594782 149594816 -32820426 + AT_rich Low_complexity Low_complexity 1 34 0 180 0 0 0 chr6 149596408 149596428 -32818814 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 504 32 0 0 chr6 149596427 149596489 -32818753 + (TG)n Simple_repeat Simple_repeat 1 62 0 584 305 63 13 chr6 149597079 149597318 -32817924 - MIR SINE MIR -11 251 1 824 225 87 5 chr6 149598778 149598996 -32816246 + L1ME3A LINE L1 5927 6162 -8 1075 220 5 18 chr6 149599269 149599492 -32815750 + MLT1A1 LTR MaLR 146 365 0 402 310 5 53 chr6 149599727 149599914 -32815328 + L1ME LINE L1 5483 5660 -504 318 340 13 0 chr6 149599928 149600078 -32815164 - MER69A DNA AcHobo -9 168 17 1628 197 32 130 chr6 149600254 149601323 -32813919 - L1ME2 LINE L1 -23 6141 5215 1946 139 3 7 chr6 149601419 149601714 -32813528 - AluSx SINE Alu -14 298 5 268 336 0 41 chr6 149602405 149602527 -32812715 + MIR SINE MIR 32 148 -114 322 150 0 25 chr6 149602642 149602722 -32812520 + (TA)n Simple_repeat Simple_repeat 2 79 0 1706 173 7 7 chr6 149602780 149603069 -32812173 - AluJb SINE Alu -23 289 1 450 0 0 0 chr6 149604034 149604084 -32811158 + (TG)n Simple_repeat Simple_repeat 1 50 0 2064 233 80 21 chr6 149604930 149605557 -32809685 - L1ME1 LINE L1 -223 6012 5323 498 75 0 0 chr6 149605557 149605624 -32809618 + (TA)n Simple_repeat Simple_repeat 1 67 0 2064 233 80 21 chr6 149605624 149605822 -32809420 - L1ME1 LINE L1 -912 5323 5138 1268 119 58 33 chr6 149605822 149606118 -32809124 + THE1B LTR MaLR 1 364 0 11308 103 6 17 chr6 149606120 149607716 -32807526 + THE1B-int LTR MaLR 3 1580 0 1974 145 54 20 chr6 149607716 149608068 -32807174 + THE1B LTR MaLR 1 364 0 1722 191 64 32 chr6 149608068 149608603 -32806639 - L1ME1 LINE L1 -1073 5142 4591 690 245 55 66 chr6 149608625 149609095 -32806147 - L1ME1 LINE L1 -5002 1394 930 1348 263 87 55 chr6 149609441 149610042 -32805200 - MER21B LTR ERV1 -146 717 98 1776 163 29 17 chr6 149610183 149610527 -32804715 + MER7A DNA MER2_type 1 346 0 2276 69 0 23 chr6 149610637 149610941 -32804301 + AluY SINE Alu 1 297 -14 734 180 32 41 chr6 149611249 149611446 -32803796 + MER93b LTR ERV1 9 265 -108 2168 88 3 3 chr6 149611446 149611729 -32803513 + AluSq SINE Alu 1 283 -30 734 180 32 41 chr6 149611729 149611838 -32803404 + MER93b LTR ERV1 265 373 0 7646 23 6 0 chr6 149611946 149613046 -32802196 + L1PA3 LINE L1 5051 6155 0 10379 52 5 88 chr6 149616028 149617537 -32797705 - SVA Other Other -1 1385 1 256 111 32 0 chr6 149617537 149617600 -32797642 + GA-rich Low_complexity Low_complexity 2 66 0 456 115 29 0 chr6 149617875 149617979 -32797263 + GA-rich Low_complexity Low_complexity 3 109 0 226 211 0 56 chr6 149618411 149618482 -32796760 + L1PA16 LINE L1 5995 6061 -105 642 221 7 7 chr6 149618518 149618667 -32796575 + L1PA16 LINE L1 6018 6166 0 252 0 0 0 chr6 149619506 149619534 -32795708 + (CAAAC)n Simple_repeat Simple_repeat 5 32 0 686 216 4 0 chr6 149619542 149619777 -32795465 + CT-rich Low_complexity Low_complexity 1 236 0 23 0 0 0 chr6 149620191 149620214 -32795028 + AT_rich Low_complexity Low_complexity 1 23 0 204 164 16 49 chr6 149620344 149620405 -32794837 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 21 0 0 0 chr6 149620641 149620662 -32794580 + AT_rich Low_complexity Low_complexity 1 21 0 279 273 57 96 chr6 149621173 149621382 -32793860 + MIR SINE MIR 59 259 -3 24 32 0 0 chr6 149621398 149621429 -32793813 + AT_rich Low_complexity Low_complexity 1 31 0 34 0 0 0 chr6 149623054 149623088 -32792154 + AT_rich Low_complexity Low_complexity 1 34 0 293 194 15 30 chr6 149623275 149623342 -32791900 + MIR SINE MIR 75 140 -122 324 70 0 0 chr6 149624692 149624735 -32790507 + (CA)n Simple_repeat Simple_repeat 1 43 0 328 340 50 21 chr6 149625218 149625359 -32789883 + MIR3 SINE MIR 20 164 -44 223 369 141 31 chr6 149625381 149625771 -32789471 + L2 LINE L2 2424 2856 -458 398 168 131 15 chr6 149626750 149626887 -32788355 + MER33 DNA MER1_type 47 199 -125 1535 174 56 53 chr6 149627344 149627718 -32787524 - THE1C LTR MaLR 0 375 1 8966 146 11 42 chr6 149627719 149629346 -32785896 - THE1C-int LTR MaLR -1 1579 4 1539 169 68 44 chr6 149629349 149629715 -32785527 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr6 149629744 149629772 -32785470 + AT_rich Low_complexity Low_complexity 1 28 0 2075 139 0 0 chr6 149629775 149630069 -32785173 + AluSq SINE Alu 2 295 -18 3360 271 100 52 chr6 149630724 149632379 -32782863 + L1M4 LINE L1 238 2018 -4941 2155 114 19 53 chr6 149632379 149632756 -32782486 - THE1B LTR MaLR 0 364 1 3360 271 100 52 chr6 149632756 149633153 -32782089 + L1M4 LINE L1 2018 2394 -4565 2825 245 58 41 chr6 149633367 149634086 -32781156 + L1M4 LINE L1 2476 3181 -3776 189 107 0 0 chr6 149634086 149634114 -32781128 + (TA)n Simple_repeat Simple_repeat 1 28 0 2825 245 58 41 chr6 149634114 149634926 -32780316 + L1M4 LINE L1 3181 3994 -2963 3481 208 69 87 chr6 149634934 149636476 -32778766 + L1M4 LINE L1 4632 6145 -812 1946 245 14 7 chr6 149636485 149636913 -32778329 - MER77 LTR ERV1 -7 598 168 244 235 44 0 chr6 149636920 149636988 -32778254 + L1M4 LINE L1 6486 6556 -433 1756 206 83 8 chr6 149637015 149637485 -32777757 + L1MB8 LINE L1 5674 6178 0 273 242 0 16 chr6 149637499 149637561 -32777681 - MLT1J LTR MaLR -331 180 120 2564 223 31 13 chr6 149637593 149638271 -32776971 - L1 LINE L1 -2876 3270 2581 204 238 0 0 chr6 149638422 149638464 -32776778 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 186 43 0 0 chr6 149640258 149640281 -32774961 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr6 149641529 149641551 -32773691 + AT_rich Low_complexity Low_complexity 1 22 0 1550 156 4 0 chr6 149641846 149642102 -32773140 - L1MC1 LINE L1 -15 6318 6062 22 0 0 0 chr6 149642276 149642298 -32772944 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr6 149642495 149642532 -32772710 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 5226 45 1 11 chr6 149642532 149643195 -32772047 - L1PA5 LINE L1 -13 6141 5485 263 258 48 0 chr6 149645634 149645696 -32769546 + L2 LINE L2 3208 3272 0 198 0 0 0 chr6 149646206 149646228 -32769014 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1570 129 20 0 chr6 149647256 149647504 -32767738 + L1 LINE L1 3789 4041 -2105 849 171 26 0 chr6 149647500 149647652 -32767590 - L1MA9 LINE L1 -334 5978 5823 * 327 131 33 0 chr6 149647647 149647708 -32767534 - L1MA9 LINE L1 -962 5329 5267 * 1749 140 10 127 chr6 149647708 149648101 -32767141 - MER7A DNA MER2_type 0 346 2 3061 190 5 26 chr6 149648106 149648732 -32766510 - L1MA9 LINE L1 -882 5264 4652 2204 192 61 0 chr6 149648742 149649200 -32766042 + L1M3 LINE L1 5318 5803 -365 * 2437 253 124 12 chr6 149649199 149650115 -32765127 - L1 LINE L1 -832 5314 4296 * 9442 181 92 18 chr6 149650103 149650308 -32764934 - L1M4c LINE L1 -4051 2333 2145 1784 161 122 31 chr6 149650308 149650700 -32764542 + MSTA LTR MaLR 1 428 0 8866 137 19 43 chr6 149650702 149652319 -32762923 + MSTA-int LTR MaLR 3 1580 0 1477 174 160 16 chr6 149652319 149652693 -32762549 + MSTA LTR MaLR 1 428 0 9442 181 92 18 chr6 149652693 149654594 -32760648 - L1M4c LINE L1 -4238 2146 66 3189 136 49 17 chr6 149654594 149654653 -32760589 + MER50 LTR ERV1 1 57 -677 2334 144 6 3 chr6 149654653 149655014 -32760228 + THE1B LTR MaLR 3 364 0 3189 136 49 17 chr6 149655014 149655611 -32759631 + MER50 LTR ERV1 57 711 -23 232 204 23 0 chr6 149655612 149655656 -32759586 - L1M4c LINE L1 -6315 69 25 26 0 0 0 chr6 149655706 149655732 -32759510 + AT_rich Low_complexity Low_complexity 1 26 0 783 302 69 38 chr6 149657444 149657762 -32757480 - MLT2F LTR ERVL -335 328 1 270 0 0 0 chr6 149658144 149658174 -32757068 + (CA)n Simple_repeat Simple_repeat 1 30 0 418 311 67 50 chr6 149658941 149659121 -32756121 - MIR SINE MIR -75 187 5 895 156 7 0 chr6 149659565 149659716 -32755526 + LOR1a LTR ERV1 1 152 -345 429 79 32 0 chr6 149659716 149659779 -32755463 + MADE1 DNA Mariner 1 65 -15 1971 154 42 28 chr6 149659787 149660144 -32755098 + LOR1a LTR ERV1 136 497 0 2351 167 26 17 chr6 149660189 149660722 -32754520 - L1MA9 LINE L1 -176 5995 5478 333 278 120 9 chr6 149660733 149660841 -32754401 - MIR SINE MIR -120 142 23 1857 222 86 8 chr6 149661520 149662043 -32753199 + L1MD3 LINE L1 7313 7876 -119 474 220 20 0 chr6 149662466 149662566 -32752676 - MER58 DNA MER1_type 0 2420 2319 352 216 0 14 chr6 149662579 149662653 -32752589 - MER58 DNA MER1_type -242 99 27 271 269 102 48 chr6 149662737 149662794 -32752448 - L1ME LINE L1 -559 5603 5551 1867 151 64 17 chr6 149662794 149663152 -32752090 - THE1C LTR MaLR 0 375 1 271 269 102 48 chr6 149663152 149663261 -32751981 - L1ME LINE L1 -611 5551 5428 487 289 0 0 chr6 149663277 149663381 -32751861 - FLAM_A SINE Alu -36 106 3 290 319 16 5 chr6 149663386 149663571 -32751671 - L1MA9 LINE L1 -857 5440 5254 253 312 81 6 chr6 149663687 149663860 -32751382 - L1MA9 LINE L1 -1058 5088 4903 378 299 46 11 chr6 149663943 149664117 -32751125 - L1ME LINE L1 -1331 4815 4636 3691 115 24 2 chr6 149664407 149664982 -32750260 - L1MA1 LINE L1 0 6302 5715 14854 162 48 37 chr6 149665031 149666407 -32748835 - L1P4 LINE L1 -440 7147 5788 213 39 0 0 chr6 149666407 149666433 -32748809 + (TA)n Simple_repeat Simple_repeat 1 26 0 14854 162 48 37 chr6 149666433 149666994 -32748248 - L1P4 LINE L1 -1799 5788 5235 2072 149 41 6 chr6 149666994 149667356 -32747886 - THE1C LTR MaLR 0 375 1 14854 162 48 37 chr6 149667356 149669654 -32745588 - L1P4 LINE L1 -2352 5235 2805 191 59 0 29 chr6 149669654 149669688 -32745554 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 14854 162 48 37 chr6 149669688 149671393 -32743849 - L1P4 LINE L1 -4782 2805 1121 571 169 31 31 chr6 149671375 149671505 -32743737 - L1M1 LINE L1 -7419 146 17 * 905 213 32 19 chr6 149671670 149671886 -32743356 + MER20 DNA MER1_type 1 219 0 6583 242 37 80 chr6 149671915 149673420 -32741822 - L1MCb LINE L1 -937 5627 4059 559 170 0 0 chr6 149673420 149673520 -32741722 - AluJ/FLAM SINE Alu -212 100 1 6583 242 37 80 chr6 149673520 149674816 -32740426 - L1MCb LINE L1 -2505 4059 2709 1716 124 4 0 chr6 149674816 149675066 -32740176 - AluSq SINE Alu -62 251 1 6583 242 37 80 chr6 149675066 149675981 -32739261 - L1MCb LINE L1 -3855 2709 1756 1781 170 146 8 chr6 149675981 149676357 -32738885 + MSTA LTR MaLR 1 428 0 8536 150 21 38 chr6 149676359 149677964 -32737278 + MSTA-int LTR MaLR 3 1580 0 1229 168 113 82 chr6 149677964 149678328 -32736914 + THE1C LTR MaLR 1 375 0 6583 242 37 80 chr6 149678328 149679983 -32735259 - L1MCb LINE L1 -4807 1757 250 728 261 192 42 chr6 149679985 149680222 -32735020 - L1MC4 LINE L1 -192 7850 7650 1576 161 33 11 chr6 149680222 149680495 -32734747 - AluJo SINE Alu -33 279 1 728 261 192 42 chr6 149680495 149680808 -32734434 - L1MC4 LINE L1 -392 7650 7217 237 241 19 0 chr6 149683268 149683322 -32731920 + CT-rich Low_complexity Low_complexity 1 55 0 197 105 0 26 chr6 149683322 149683360 -32731882 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 664 240 69 42 chr6 149685574 149685791 -32729451 + MIR SINE MIR 36 258 -4 1113 218 37 79 chr6 149685845 149686007 -32729235 + MLT1A1 LTR MaLR 1 168 -197 2131 106 6 40 chr6 149686007 149686140 -32729102 + AluSp SINE Alu 1 137 -176 2153 103 0 0 chr6 149686140 149686469 -32728773 + AluSx SINE Alu 1 329 0 2131 106 6 40 chr6 149686469 149686655 -32728587 + AluSp SINE Alu 137 310 -3 1113 218 37 79 chr6 149686655 149686873 -32728369 + MLT1A1 LTR MaLR 168 365 0 187 311 122 0 chr6 149687266 149687340 -32727902 + L2 LINE L2 3228 3310 -3 217 49 0 49 chr6 149687918 149687959 -32727283 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 214 324 186 47 chr6 149688156 149689189 -32726053 + L2 LINE L2 1569 2745 -569 243 196 20 0 chr6 149690231 149690282 -32724960 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 232 303 55 76 chr6 149690361 149690506 -32724736 - MIR3 SINE MIR -64 144 3 22 35 0 0 chr6 149690708 149690737 -32724505 + AT_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chr6 149691029 149691053 -32724189 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2283 82 10 10 chr6 149691060 149691363 -32723879 - AluSq SINE Alu -10 303 1 212 233 55 41 chr6 149691394 149691467 -32723775 + MIR SINE MIR 66 139 -123 654 201 6 25 chr6 149692306 149692465 -32722777 - L1MD2 LINE L1 -3 6750 6595 1255 174 5 5 chr6 149692484 149692696 -32722546 - Tigger3(Golem) DNA MER2_type -2 3027 2816 880 244 41 21 chr6 149692696 149692938 -32722304 - L1MD2 LINE L1 -258 6495 6249 1936 179 6 20 chr6 149692939 149693286 -32721956 + MLT1A1 LTR MaLR 1 342 -23 5297 243 42 33 chr6 149693329 149695761 -32719481 - L1MD2 LINE L1 -400 6236 3765 516 220 214 90 chr6 149695767 149695816 -32719426 + MSTD LTR MaLR 6 48 -348 1308 190 18 122 chr6 149695816 149695955 -32719287 + AluJb SINE Alu 1 86 -216 1675 182 0 31 chr6 149695955 149696274 -32718968 + AluJb SINE Alu 4 312 0 1308 190 18 122 chr6 149696274 149696471 -32718771 + AluJb SINE Alu 86 302 0 516 220 214 90 chr6 149696471 149696734 -32718508 + MSTD LTR MaLR 48 396 0 2575 237 42 11 chr6 149696765 149697638 -32717604 - L1MD2 LINE L1 -2798 3742 2843 180 0 0 0 chr6 149697654 149697674 -32717568 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 932 226 0 83 chr6 149697676 149697941 -32717301 - AluJo SINE Alu -30 282 40 5889 225 86 42 chr6 149697973 149700127 -32715115 - L1MD2 LINE L1 -3760 2780 538 1654 181 48 74 chr6 149700136 149700529 -32714713 - MLT1B LTR MaLR 0 390 8 788 299 19 5 chr6 149700551 149700762 -32714480 - L1MD2 LINE L1 -6023 517 304 223 254 32 0 chr6 149701098 149701161 -32714081 - MIR SINE MIR -48 214 150 901 274 62 53 chr6 149701361 149701719 -32713523 + LTR33 LTR ERVL 138 498 -23 635 327 120 25 chr6 149704197 149704798 -32710444 - L2 LINE L2 -87 3226 2580 2110 127 0 16 chr6 149704863 149705178 -32710064 + AluSx SINE Alu 1 310 -2 213 308 167 0 chr6 149705245 149705365 -32709877 + MIR3 SINE MIR 62 201 -7 243 354 77 0 chr6 149707610 149707740 -32707502 - L3b LINE CR1 -216 1367 1228 471 98 98 0 chr6 149708473 149708555 -32706687 - MSTC LTR MaLR 0 428 339 345 222 26 26 chr6 149708575 149708692 -32706550 - L1MEc LINE L1 -2243 4714 4598 3726 248 30 45 chr6 149708875 149710466 -32704776 - L1M4 LINE L1 -4839 2120 560 987 250 80 91 chr6 149710499 149711764 -32703478 - L1MEc LINE L1 -3308 3649 2434 288 269 66 78 chr6 149711952 149712119 -32703123 + MLT1I LTR MaLR 244 408 -1 2245 112 3 0 chr6 149712963 149713275 -32701967 - AluSp SINE Alu 0 313 1 804 65 24 0 chr6 149713616 149713740 -32701502 + (TCTA)n Simple_repeat Simple_repeat 2 128 0 26 82 0 0 chr6 149714071 149714132 -32701110 + AT_rich Low_complexity Low_complexity 1 61 0 1563 118 8 16 chr6 149717236 149717482 -32697760 - MSTA LTR MaLR -184 244 1 1191 267 139 41 chr6 149717928 149718467 -32696775 - MLT1E LTR MaLR -1 592 1 21 36 0 0 chr6 149719262 149719290 -32695952 + AT_rich Low_complexity Low_complexity 1 28 0 195 302 47 23 chr6 149719665 149719751 -32695491 - MIR SINE MIR -63 199 112 337 331 28 21 chr6 149720270 149720415 -32694827 - L2 LINE L2 -245 3068 2923 421 217 26 0 chr6 149720941 149721056 -32694186 + MER53 DNA DNA 22 139 -50 2051 126 0 0 chr6 149721310 149721609 -32693633 + AluSx SINE Alu 7 305 0 2524 155 17 44 chr6 149721749 149722227 -32693015 - MLT1C LTR MaLR -2 465 1 271 289 74 44 chr6 149722268 149722403 -32692839 + MIR SINE MIR 41 179 -83 290 160 0 0 chr6 149722808 149722858 -32692384 - MLT1C LTR MaLR -337 130 81 398 285 138 38 chr6 149722999 149723318 -32691924 + L1 LINE L1 3684 4034 -2112 481 305 146 49 chr6 149723331 149723922 -32691320 - L1MC4 LINE L1 -5 8037 7390 1163 211 162 101 chr6 149723942 149724505 -32690737 - MLT1E1 LTR MaLR 0 654 58 53 57 0 0 chr6 149724774 149724862 -32690380 + AT_rich Low_complexity Low_complexity 1 88 0 2167 92 7 26 chr6 149724885 149725189 -32690053 + AluSx SINE Alu 1 298 -14 34 55 0 0 chr6 149725587 149725642 -32689600 + AT_rich Low_complexity Low_complexity 1 55 0 1666 172 35 0 chr6 149726060 149726350 -32688892 - AluJo SINE Alu -12 300 1 23 33 0 0 chr6 149726424 149726454 -32688788 + AT_rich Low_complexity Low_complexity 1 30 0 35 71 0 0 chr6 149726928 149726998 -32688244 + AT_rich Low_complexity Low_complexity 1 70 0 607 286 85 39 chr6 149730020 149730303 -32684939 + MLT1H LTR MaLR 12 307 -242 1298 270 51 55 chr6 149730453 149731056 -32684186 - L1ME1 LINE L1 -5 6230 5630 1683 174 15 15 chr6 149731072 149731411 -32683831 - LTR27 LTR ERV1 0 636 298 624 254 0 18 chr6 149731406 149731575 -32683667 - LTR28 LTR ERV1 -854 166 1 * 5998 270 63 44 chr6 149731575 149734236 -32681006 - L1ME1 LINE L1 -614 5621 3012 2341 162 10 5 chr6 149734236 149734637 -32680605 - MER57A LTR ERV1 0 403 1 5998 270 63 44 chr6 149734637 149736791 -32678451 - L1ME1 LINE L1 -3223 3012 900 2056 99 14 7 chr6 149736791 149737121 -32678121 - AluSq SINE Alu 0 332 1 5998 270 63 44 chr6 149737121 149737238 -32678004 - L1ME1 LINE L1 -5335 900 787 2066 120 3 19 chr6 149737238 149737547 -32677695 + AluY SINE Alu 1 304 -7 5998 270 63 44 chr6 149737547 149738149 -32677093 - L1ME1 LINE L1 -5448 787 36 1619 278 103 40 chr6 149738158 149738822 -32676420 + L1ME2 LINE L1 4854 5475 -689 291 54 0 0 chr6 149738822 149738859 -32676383 + (TG)n Simple_repeat Simple_repeat 2 38 0 1619 278 103 40 chr6 149738859 149739401 -32675841 + L1ME2 LINE L1 5475 6155 -9 21 0 0 0 chr6 149739484 149739505 -32675737 + AT_rich Low_complexity Low_complexity 1 21 0 1652 165 0 75 chr6 149739699 149740032 -32675210 - AluJb SINE Alu -3 309 2 1534 200 144 58 chr6 149740198 149740677 -32674565 - MLT2B1 LTR ERVL 0 520 1 2956 182 56 3 chr6 149740677 149741548 -32673694 - ERVL LTR ERVL -1924 3840 2885 5949 168 7 25 chr6 149744051 149744517 -32670725 - L1MC1 LINE L1 -11 6322 5849 1828 140 14 7 chr6 149744517 149744809 -32670433 + AluSx SINE Alu 1 294 -18 5949 168 7 25 chr6 149744809 149745398 -32669844 - L1MC1 LINE L1 -484 5849 5284 3722 89 2 12 chr6 149745398 149745917 -32669325 + MER75 DNA T2_type 1 514 0 5949 168 7 25 chr6 149745917 149746029 -32669213 - L1MC1 LINE L1 -1049 5284 5172 23 78 0 0 chr6 149746629 149746680 -32668562 + AT_rich Low_complexity Low_complexity 1 51 0 241 350 147 18 chr6 149747306 149747469 -32667773 + MIR3 SINE MIR 3 186 -22 390 42 0 0 chr6 149747788 149747836 -32667406 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 241 139 0 0 chr6 149749410 149749446 -32665796 + MLT1A1 LTR MaLR 5 40 -334 1891 155 116 3 chr6 149749447 149749776 -32665466 - MER47A DNA MER2_type 0 366 1 916 172 13 6 chr6 149749779 149749936 -32665306 + MLT1A1 LTR MaLR 43 200 -165 242 50 83 17 chr6 149749936 149749996 -32665246 + A-rich Low_complexity Low_complexity 5 68 0 702 182 15 8 chr6 149750025 149750157 -32665085 + MLT1A1 LTR MaLR 205 337 -28 2227 102 0 10 chr6 149750699 149751012 -32664230 - AluSp SINE Alu -1 312 3 725 289 103 0 chr6 149751044 149751276 -32663966 - MIR SINE MIR 0 262 7 29 0 0 0 chr6 149751624 149751653 -32663589 + AT_rich Low_complexity Low_complexity 1 29 0 48 43 0 0 chr6 149752996 149753065 -32662177 + AT_rich Low_complexity Low_complexity 1 69 0 260 331 57 32 chr6 149753258 149753415 -32661827 - MIR SINE MIR -101 161 1 4606 262 80 39 chr6 149753471 149754848 -32660394 - L1MD2 LINE L1 -2 6357 5038 2114 208 20 13 chr6 149754848 149755300 -32659942 + MSTB2 LTR MaLR 1 455 -2 4606 262 80 39 chr6 149755300 149755624 -32659618 - L1MD2 LINE L1 -1321 5038 4729 2293 90 0 32 chr6 149755624 149755934 -32659308 + AluY SINE Alu 1 300 -11 4606 262 80 39 chr6 149755934 149756396 -32658846 - L1MD2 LINE L1 -1630 4729 4287 1531 98 31 5 chr6 149756396 149756620 -32658622 - MER30 DNA MER1_type 0 230 1 4606 262 80 39 chr6 149756620 149756890 -32658352 - L1MD2 LINE L1 -2072 4287 4030 1651 191 64 9 chr6 149756890 149757236 -32658006 + MLT1A1 LTR MaLR 1 365 0 4606 262 80 39 chr6 149757236 149757784 -32657458 - L1MD2 LINE L1 -2329 4030 3243 771 251 14 18 chr6 149757803 149758022 -32657220 - L1M4 LINE L1 -1201 4945 4728 250 189 0 0 chr6 149758027 149758080 -32657162 + L1 LINE L1 5008 5060 -1086 742 300 86 5 chr6 149758239 149758672 -32656570 + L1ME3A LINE L1 3883 4350 -1796 297 138 0 35 chr6 149758700 149758758 -32656484 + L1PB1 LINE L1 6094 6149 -2 301 341 126 0 chr6 149758828 149759010 -32656232 + L1ME3A LINE L1 4420 4624 -1522 950 175 18 12 chr6 149759612 149759783 -32655459 + FRAM SINE Alu 1 169 -7 1265 280 68 24 chr6 149759977 149760185 -32655057 + L1ME3A LINE L1 5272 5469 -701 1798 123 3 44 chr6 149760185 149760512 -32654730 + AluSx SINE Alu 1 315 0 1265 280 68 24 chr6 149760512 149761033 -32654209 + L1ME3A LINE L1 5469 6039 -131 237 33 0 0 chr6 149761038 149761068 -32654174 + (TC)n Simple_repeat Simple_repeat 1 30 0 193 418 41 27 chr6 149761393 149761685 -32653557 + L2 LINE L2 2817 3112 -160 3183 186 35 8 chr6 149761713 149762434 -32652808 - L1MB1 LINE L1 -246 5922 5183 1899 160 8 48 chr6 149762435 149762810 -32652432 + L1MA10 LINE L1 5885 6244 -90 1853 204 75 60 chr6 149762813 149763009 -32652233 - MER34 LTR ERV1 0 542 350 1914 148 73 14 chr6 149763009 149763353 -32651889 + THE1B LTR MaLR 1 364 0 1853 204 75 60 chr6 149763353 149763546 -32651696 - MER34 LTR ERV1 -192 350 140 2324 79 0 22 chr6 149763546 149763862 -32651380 - AluY SINE Alu -2 309 1 1853 204 75 60 chr6 149763862 149764005 -32651237 - MER34 LTR ERV1 -402 140 1 372 167 11 33 chr6 149764005 149764095 -32651147 + L1MA10 LINE L1 6244 6331 -3 499 222 0 0 chr6 149764639 149764738 -32650504 + MIR SINE MIR 163 261 -1 1066 237 55 80 chr6 149765840 149766317 -32648925 - MLT1C LTR MaLR -2 465 1 2098 133 0 0 chr6 149766467 149766768 -32648474 + AluSx SINE Alu 1 301 -11 924 233 10 5 chr6 149767204 149767406 -32647836 - MLT1B LTR MaLR -1 389 187 563 209 35 99 chr6 149767442 149767643 -32647599 - MLT1B LTR MaLR -186 188 1 237 268 99 0 chr6 149767978 149768049 -32647193 + L3 LINE CR1 892 969 -608 2072 143 36 38 chr6 149768065 149768430 -32646812 + THE1B LTR MaLR 1 364 0 193 274 35 62 chr6 149768742 149768855 -32646387 - MIR SINE MIR 0 262 153 231 269 227 14 chr6 149769442 149769583 -32645659 - MIR SINE MIR -44 218 48 243 0 0 0 chr6 149769751 149769778 -32645464 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 251 342 71 29 chr6 149770268 149770366 -32644876 - HAL1 LINE L1 -2038 469 377 2114 204 40 13 chr6 149770366 149770821 -32644421 + MLT1C LTR MaLR 1 467 0 251 342 71 29 chr6 149770821 149771003 -32644239 - HAL1 LINE L1 -2130 377 177 21 36 0 0 chr6 149771005 149771033 -32644209 + AT_rich Low_complexity Low_complexity 1 28 0 300 316 65 32 chr6 149771053 149771208 -32644034 - HAL1 LINE L1 -2344 163 4 22 35 0 0 chr6 149771433 149771462 -32643780 + AT_rich Low_complexity Low_complexity 1 29 0 6193 126 20 3 chr6 149771780 149772782 -32642460 + L1MA1 LINE L1 5276 6294 -8 26 0 0 0 chr6 149772911 149772937 -32642305 + AT_rich Low_complexity Low_complexity 1 26 0 6929 215 61 6 chr6 149774200 149775633 -32639609 + L1M1 LINE L1 15 1525 -6040 5697 196 29 11 chr6 149775630 149777276 -32637966 + L1M1 LINE L1 3327 5007 -2558 * 6331 186 23 6 chr6 149777275 149778583 -32636659 + L1M1 LINE L1 5423 6752 -813 23 0 0 0 chr6 149781285 149781308 -32633934 + AT_rich Low_complexity Low_complexity 1 23 0 1648 182 40 70 chr6 149782449 149782851 -32632391 - MLT1B LTR MaLR 0 390 1 2627 294 46 37 chr6 149782853 149783344 -32631898 - L1ME1 LINE L1 -5 6441 5956 2206 102 3 10 chr6 149783344 149783649 -32631593 + AluSp SINE Alu 3 305 -8 2627 294 46 37 chr6 149783649 149784612 -32630630 - L1ME1 LINE L1 -490 5956 4975 685 198 120 6 chr6 149784610 149784777 -32630465 - L1MB7 LINE L1 -20 6164 5979 * 1582 211 32 108 chr6 149784812 149785305 -32629937 + MLT1C-int LTR MaLR 916 1371 0 1498 232 83 12 chr6 149785310 149785732 -32629510 + MLT1C LTR MaLR 6 457 -10 368 317 34 22 chr6 149785735 149785914 -32629328 - L1ME1 LINE L1 -4475 2028 1782 6316 148 24 11 chr6 149785925 149787577 -32627665 - L1MA3 LINE L1 -3 7721 6050 5897 193 52 15 chr6 149787572 149788218 -32627024 - L1MA3 LINE L1 -2469 5096 4475 * 2303 63 10 23 chr6 149788218 149788518 -32626724 + AluY SINE Alu 13 308 -3 5897 193 52 15 chr6 149788518 149789654 -32625588 - L1MA3 LINE L1 -3090 4475 3238 252 59 0 0 chr6 149789664 149789698 -32625544 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 665 192 0 0 chr6 149789699 149789819 -32625423 - AluSq/x SINE Alu -193 120 1 13080 160 26 50 chr6 149789823 149792207 -32623035 - L1MA3 LINE L1 -4313 3252 930 2443 66 0 28 chr6 149792207 149792527 -32622715 - AluY SINE Alu 0 311 1 13080 160 26 50 chr6 149792527 149792665 -32622577 - L1MA3 LINE L1 -6635 930 790 1909 207 6 6 chr6 149792975 149793338 -32621904 - MLT1A1 LTR MaLR 0 365 3 458 278 58 94 chr6 149794621 149794963 -32620279 + MLT1J LTR MaLR 128 457 -54 1931 234 24 11 chr6 149795422 149795874 -32619368 - MLT1C LTR MaLR 0 467 10 193 250 0 0 chr6 149796013 149796057 -32619185 - MIR SINE MIR -15 247 204 986 224 73 33 chr6 149796180 149796605 -32618637 + L1MC5 LINE L1 7476 7917 -44 189 74 0 0 chr6 149798096 149798123 -32617119 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 313 333 185 9 chr6 149798223 149798445 -32616797 + MIR SINE MIR 1 261 -1 22 56 0 0 chr6 149799791 149799827 -32615415 + AT_rich Low_complexity Low_complexity 1 36 0 1525 114 9 135 chr6 149799846 149800280 -32614962 - AluSx SINE Alu 0 393 1 218 227 18 36 chr6 149800768 149800878 -32614364 + (TTATA)n Simple_repeat Simple_repeat 4 111 0 1749 152 29 0 chr6 149802153 149802469 -32612773 - L1MB1 LINE L1 0 6168 5844 623 304 141 4 chr6 149802574 149802801 -32612441 + MIR SINE MIR 2 259 -3 24 0 0 0 chr6 149803549 149803573 -32611669 + AT_rich Low_complexity Low_complexity 1 24 0 251 209 36 27 chr6 149805465 149805575 -32609667 + (TA)n Simple_repeat Simple_repeat 1 111 0 2545 136 49 0 chr6 149805630 149806036 -32609206 - MSTA-int LTR MaLR -1150 430 5 1894 164 122 10 chr6 149806040 149806425 -32608817 - MSTA LTR MaLR 0 428 1 191 339 0 0 chr6 149806425 149806481 -32608761 - MIR SINE MIR -23 239 184 359 205 128 51 chr6 149806804 149806921 -32608321 - L2 LINE L2 -5 3308 3183 285 285 171 56 chr6 149806942 149807282 -32607960 - MLT1J1 LTR MaLR -6 440 62 1973 219 31 5 chr6 149807297 149807952 -32607290 - L1MC/D LINE L1 -754 5392 4824 424 290 12 31 chr6 149807997 149808159 -32607083 - MIR SINE MIR -57 205 47 26 50 0 0 chr6 149812317 149812357 -32602885 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr6 149813274 149813310 -32601932 + AT_rich Low_complexity Low_complexity 1 36 0 303 321 41 55 chr6 149814465 149814736 -32600506 - HAL1 LINE L1 -888 1619 1353 370 217 77 21 chr6 149814998 149815067 -32600175 - L1MA10 LINE L1 -2 6332 6264 638 231 84 62 chr6 149815067 149815340 -32599902 - L1ME1 LINE L1 -66 6100 5822 268 240 326 0 chr6 149815408 149815583 -32599659 - L1ME1 LINE L1 -1570 4576 4345 309 151 0 0 chr6 149815660 149815713 -32599529 + (TA)n Simple_repeat Simple_repeat 2 54 0 230 178 0 0 chr6 149815713 149815758 -32599484 + LTR66 LTR ERVL 394 438 -172 2891 276 91 11 chr6 149815768 149817103 -32598139 - L1ME1 LINE L1 -1925 4221 2780 297 269 0 0 chr6 149817125 149817192 -32598050 - MLT1F LTR MaLR -432 110 44 386 289 69 129 chr6 149817611 149817929 -32597313 - L2 LINE L2 -540 2774 2476 935 281 13 22 chr6 149817930 149818247 -32596995 + L1ME1 LINE L1 5846 6159 -7 1383 256 111 13 chr6 149818607 149819150 -32596092 + L1M4 LINE L1 3523 4118 -2028 434 228 26 212 chr6 149819183 149819306 -32595936 + MER70A LTR ERVL 1 145 -327 2077 75 0 0 chr6 149819306 149819584 -32595658 + L1PA8 LINE L1 5885 6162 -10 434 228 26 212 chr6 149819584 149819851 -32595391 + MER70A LTR ERVL 145 318 -154 8075 219 79 31 chr6 149819865 149820132 -32595110 + L1 LINE L1 1708 1961 -4185 2132 108 7 0 chr6 149820132 149820428 -32594814 + AluSp SINE Alu 1 298 -15 8075 219 79 31 chr6 149820428 149822620 -32592622 + L1 LINE L1 1961 4240 -1906 1622 184 32 0 chr6 149822620 149822898 -32592344 + AluJb SINE Alu 3 289 -23 8075 219 79 31 chr6 149822898 149823151 -32592091 + L1 LINE L1 4240 4479 -1667 2294 321 21 24 chr6 149823160 149824005 -32591237 + L1PA13 LINE L1 1 843 -5944 * 3858 236 24 13 chr6 149823976 149825056 -32590186 + L1PA13 LINE L1 1324 2425 -4372 2908 227 45 47 chr6 149825056 149825195 -32590047 + L1MC3 LINE L1 6735 6873 -912 1815 149 49 35 chr6 149825195 149825565 -32589677 - THE1C LTR MaLR 0 375 1 2908 227 45 47 chr6 149825565 149825849 -32589393 + L1MC3 LINE L1 6873 7156 -629 871 107 27 0 chr6 149825849 149825998 -32589244 - L1MA5A LINE L1 0 6297 6145 2908 227 45 47 chr6 149825998 149826526 -32588716 + L1MC3 LINE L1 7156 7685 -100 34 72 0 0 chr6 149826545 149826614 -32588628 + AT_rich Low_complexity Low_complexity 1 69 0 501 258 13 0 chr6 149826619 149826774 -32588468 + L1MC3 LINE L1 7621 7777 -8 255 400 16 32 chr6 149829418 149829543 -32585699 - L2 LINE L2 -32 3240 3118 21 57 0 0 chr6 149830123 149830158 -32585084 + AT_rich Low_complexity Low_complexity 1 35 0 2066 133 25 30 chr6 149830285 149830647 -32584595 + THE1B LTR MaLR 5 364 0 9212 96 20 13 chr6 149830647 149830994 -32584248 + THE1B-int LTR MaLR 1 344 -1236 2114 128 3 6 chr6 149830994 149831307 -32583935 - AluSx SINE Alu 0 312 1 9212 96 20 13 chr6 149831307 149832528 -32582714 + THE1B-int LTR MaLR 344 1580 0 2156 136 19 32 chr6 149832534 149832903 -32582339 + THE1B LTR MaLR 1 364 0 1005 320 127 39 chr6 149833356 149834072 -32581170 - L2 LINE L2 -605 2709 1931 4161 108 19 0 chr6 149834668 149835530 -32579712 - L1PA8A LINE L1 -538 5593 4714 4067 72 7 13 chr6 149835537 149836089 -32579153 + L1PA8A LINE L1 5568 6116 -15 297 0 0 0 chr6 149837201 149837234 -32578008 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 71 0 0 chr6 149837494 149837536 -32577706 + AT_rich Low_complexity Low_complexity 1 42 0 294 29 0 0 chr6 149838100 149838135 -32577107 + (TG)n Simple_repeat Simple_repeat 2 36 0 184 355 66 33 chr6 149838141 149838293 -32576949 - L2 LINE L2 -557 2757 2601 29 0 0 0 chr6 149841482 149841511 -32573731 + AT_rich Low_complexity Low_complexity 1 29 0 303 247 0 0 chr6 149841744 149841833 -32573409 + (TA)n Simple_repeat Simple_repeat 2 90 0 231 180 0 0 chr6 149841881 149841931 -32573311 + L1MC4 LINE L1 6652 6701 -1341 320 319 54 18 chr6 149842123 149842289 -32572953 + MIR SINE MIR 91 262 0 23 33 0 0 chr6 149842723 149842753 -32572489 + AT_rich Low_complexity Low_complexity 1 30 0 2619 42 0 6 chr6 149843068 149843381 -32571861 - AluY SINE Alu 0 311 1 308 335 39 5 chr6 149843711 149843914 -32571328 - L1MC4a LINE L1 -1918 5890 5681 967 122 7 0 chr6 149844276 149844424 -32570818 + AluSp/q SINE Alu 165 313 0 180 0 0 0 chr6 149844736 149844756 -32570486 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2194 107 0 7 chr6 149844802 149845100 -32570142 - AluSx SINE Alu -16 296 1 461 338 59 14 chr6 149845180 149845399 -32569843 - MIR SINE MIR -15 247 19 2104 99 7 0 chr6 149845432 149845741 -32569501 - AluSx SINE Alu 0 311 1 229 216 0 0 chr6 149845741 149845792 -32569450 + T-rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr6 149846601 149846624 -32568618 + AT_rich Low_complexity Low_complexity 1 23 0 201 39 0 0 chr6 149848005 149848031 -32567211 + (CA)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr6 149849266 149849291 -32565951 + AT_rich Low_complexity Low_complexity 1 25 0 1707 133 25 36 chr6 149850173 149850452 -32564790 + AluSx SINE Alu 1 276 -36 7299 40 0 5 chr6 149850468 149851664 -32563578 - L1PA4 LINE L1 -3 6152 4962 222 118 0 0 chr6 149851675 149851709 -32563533 + (A)n Simple_repeat Simple_repeat 1 34 0 22 56 0 0 chr6 149852016 149852052 -32563190 + AT_rich Low_complexity Low_complexity 1 36 0 183 100 0 0 chr6 149852103 149852133 -32563109 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 469 262 140 20 chr6 149852220 149852670 -32562572 - HAL1b LINE L1 -196 1152 649 2828 233 34 17 chr6 149852676 149853881 -32561361 - L1MD1 LINE L1 -14 6228 4964 995 247 44 81 chr6 149853883 149854401 -32560841 - L1M4 LINE L1 -1099 5047 4549 1910 174 8 5 chr6 149854412 149854656 -32560586 - L1MB1 LINE L1 -1 6167 5920 2634 98 6 11 chr6 149854656 149855022 -32560220 + THE1B LTR MaLR 1 364 0 1910 174 8 5 chr6 149855022 149855161 -32560081 - L1MB1 LINE L1 -248 5920 5783 453 144 51 0 chr6 149855162 149855280 -32559962 + (TA)n Simple_repeat Simple_repeat 1 124 0 239 163 61 0 chr6 149855289 149855338 -32559904 - L1MB1 LINE L1 -974 5172 5121 2998 247 75 90 chr6 149855347 149855485 -32559757 - L1M4 LINE L1 -1609 4537 4398 825 209 6 6 chr6 149855485 149855648 -32559594 - FRAM SINE Alu -3 163 1 2998 247 75 90 chr6 149855648 149856367 -32558875 - L1M4 LINE L1 -1748 4398 3670 261 0 0 0 chr6 149856367 149856396 -32558846 + (TA)n Simple_repeat Simple_repeat 1 29 0 2998 247 75 90 chr6 149856396 149857617 -32557625 - L1M4 LINE L1 -2476 3670 2489 * 5465 202 68 14 chr6 149857612 149858367 -32556875 - L1MC3 LINE L1 0 7785 7072 1963 175 52 38 chr6 149858367 149858789 -32556453 + MSTA LTR MaLR 1 428 0 5465 202 68 14 chr6 149858789 149858918 -32556324 - L1MC3 LINE L1 -713 7072 6951 420 20 0 0 chr6 149858918 149858967 -32556275 + (TG)n Simple_repeat Simple_repeat 2 50 0 5465 202 68 14 chr6 149858967 149859395 -32555847 - L1MC3 LINE L1 -834 6951 6401 2221 119 3 0 chr6 149859431 149859726 -32555516 - AluSx SINE Alu -15 297 2 457 106 0 0 chr6 149859917 149859983 -32555259 - MADE1 DNA Mariner -14 66 1 294 264 52 72 chr6 149859998 149860127 -32555115 - MER31-int LTR ERV1 -2019 2917 2794 192 77 0 0 chr6 149860127 149860153 -32555089 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 294 264 52 72 chr6 149860153 149860273 -32554969 - MER31-int LTR ERV1 -2142 2794 2673 24 0 0 0 chr6 149860322 149860346 -32554896 + AT_rich Low_complexity Low_complexity 1 24 0 1292 213 3 4 chr6 149861176 149861413 -32553829 + Tigger7 DNA MER2_type 28 264 -265 596 133 9 38 chr6 149861411 149861516 -32553726 + Tigger7 DNA MER2_type 2485 2586 -1 * 696 247 12 0 chr6 149861516 149861677 -32553565 + MER58B DNA MER1_type 178 340 -1 1427 249 151 48 chr6 149862388 149862735 -32552507 + L1ME3 LINE L1 5335 5645 -517 2417 75 0 0 chr6 149862735 149863027 -32552215 + AluY SINE Alu 1 292 -19 1427 249 151 48 chr6 149863027 149863335 -32551907 + L1ME3 LINE L1 5645 5920 -242 2062 172 28 0 chr6 149863335 149863689 -32551553 - THE1B LTR MaLR 0 364 1 9182 119 66 40 chr6 149863689 149863872 -32551370 - THE1B-int LTR MaLR 0 1580 1403 2019 148 3 0 chr6 149863872 149864169 -32551073 + AluSx SINE Alu 1 298 -14 9182 119 66 40 chr6 149864169 149865525 -32549717 - THE1B-int LTR MaLR -177 1403 1 2205 132 49 6 chr6 149865525 149865874 -32549368 - THE1B LTR MaLR 0 364 1 1427 249 151 48 chr6 149865874 149865963 -32549279 + L1ME3 LINE L1 5919 6159 -3 29 60 0 0 chr6 149866416 149866466 -32548776 + AT_rich Low_complexity Low_complexity 1 50 0 2768 19 3 0 chr6 149867006 149867321 -32547921 - AluYb8 SINE Alu -2 316 1 1945 133 0 14 chr6 149867955 149868249 -32546993 + AluSx SINE Alu 1 290 -22 228 200 31 15 chr6 149868352 149868417 -32546825 + CT-rich Low_complexity Low_complexity 4 69 0 747 33 0 0 chr6 149868432 149868522 -32546720 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 250 259 0 12 chr6 149869069 149869150 -32546092 + (TA)n Simple_repeat Simple_repeat 2 81 0 2381 70 0 3 chr6 149871754 149872052 -32543190 - AluY SINE Alu -14 297 1 345 125 16 0 chr6 149872058 149872122 -32543120 - L1MA3 LINE L1 -1 6304 6240 712 200 0 27 chr6 149872744 149872894 -32542348 + MLT1B LTR MaLR 1 146 -244 665 159 43 13 chr6 149872894 149873030 -32542212 + MLT1B LTR MaLR 256 502 -3 231 332 88 53 chr6 149873951 149874177 -32541065 + L2 LINE L2 2444 2677 -637 770 331 72 42 chr6 149874262 149874930 -32540312 - ERVL LTR ERVL -931 4833 4146 288 272 26 9 chr6 149874948 149875062 -32540180 - ERVL LTR ERVL -2468 3296 3181 755 263 36 25 chr6 149875259 149875533 -32539709 + L1ME3A LINE L1 5881 6157 -13 255 300 86 0 chr6 149875794 149875864 -32539378 - LTR67 LTR ERVL -368 189 114 1056 107 13 0 chr6 149875904 149876054 -32539188 - THE1B LTR MaLR 0 364 213 8463 117 43 42 chr6 149876054 149877445 -32537797 - THE1B-int LTR MaLR -187 1393 1 2513 122 6 0 chr6 149877447 149877807 -32537435 - THE1B LTR MaLR -2 362 1 208 339 62 9 chr6 149877891 149878003 -32537239 - L2 LINE L2 -5 3308 3191 1828 161 44 19 chr6 149878081 149878447 -32536795 - THE1C LTR MaLR 0 375 1 348 73 18 18 chr6 149878447 149878502 -32536740 - THE1C-int LTR MaLR 0 1580 1526 615 71 0 0 chr6 149878503 149878588 -32536654 + MLT2A1 LTR ERVL 1 85 -368 * 1412 116 80 44 chr6 149878586 149878795 -32536447 + MLT2A1 LTR ERVL 186 407 -37 530 9 9 78 chr6 149878795 149878911 -32536331 + (TA)n Simple_repeat Simple_repeat 2 109 0 1412 116 80 44 chr6 149878911 149878951 -32536291 + MLT2A1 LTR ERVL 407 444 0 26293 110 24 18 chr6 149878951 149883142 -32532100 + HERVL-A1 LTR ERVL 1 4220 -1434 455 123 0 0 chr6 149883218 149883291 -32531951 + MER57A LTR ERV1 329 401 -2 24 0 0 0 chr6 149884438 149884462 -32530780 + AT_rich Low_complexity Low_complexity 1 24 0 284 279 68 59 chr6 149884673 149884895 -32530347 + L1MEd LINE L1 979 1202 -5003 281 284 115 19 chr6 149885398 149885606 -32529636 + L1MEd LINE L1 1390 1617 -4779 352 344 0 45 chr6 149885797 149886018 -32529224 + L1MEd LINE L1 1864 2074 -4322 228 35 0 0 chr6 149886076 149886105 -32529137 + (CA)n Simple_repeat Simple_repeat 2 30 0 521 285 65 83 chr6 149886569 149886941 -32528301 - L2 LINE L2 0 3313 2949 823 250 74 11 chr6 149888137 149888467 -32526775 - MSTD LTR MaLR 0 396 1 1975 177 39 38 chr6 149888523 149889073 -32526169 + MLT2A2 LTR ERVL 1 554 0 383 191 24 0 chr6 149889170 149889254 -32525988 - MLT1D LTR MaLR 0 505 420 1552 146 0 0 chr6 149889283 149889522 -32525720 + L1P4 LINE L1 5501 5739 -427 816 280 104 14 chr6 149889524 149889870 -32525372 - MLT1D LTR MaLR -72 433 57 925 159 12 6 chr6 149892040 149892203 -32523039 + L1MC1 LINE L1 5882 6045 -288 1218 135 26 26 chr6 149892308 149892538 -32522704 + L1MC1 LINE L1 6104 6333 0 22 0 0 0 chr6 149892677 149892699 -32522543 + AT_rich Low_complexity Low_complexity 1 22 0 218 81 27 0 chr6 149893700 149893737 -32521505 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 266 266 179 20 chr6 149894951 149895150 -32520092 + L1MEd LINE L1 1280 1488 -4896 559 193 28 14 chr6 149895397 149895528 -32519714 + MSTA LTR MaLR 1 142 -233 889 266 140 56 chr6 149895629 149895986 -32519256 - L1MDa LINE L1 -5616 924 538 1639 183 48 74 chr6 149895995 149896388 -32518854 - MLT1B LTR MaLR 0 390 8 788 299 19 5 chr6 149896410 149896621 -32518621 - L1MDa LINE L1 -6023 517 304 223 254 32 0 chr6 149896957 149897020 -32518222 - MIR SINE MIR -48 214 150 859 281 65 51 chr6 149897220 149897576 -32517666 + LTR33 LTR ERVL 138 498 -23 635 327 120 25 chr6 149900054 149900655 -32514587 - L2 LINE L2 -87 3226 2580 2033 129 0 16 chr6 149900720 149901023 -32514219 + AluSx SINE Alu 1 298 -14 29 60 0 0 chr6 149901421 149901471 -32513771 + AT_rich Low_complexity Low_complexity 1 50 0 1666 172 35 0 chr6 149901894 149902184 -32513058 - AluJo SINE Alu -12 300 1 23 33 0 0 chr6 149902258 149902288 -32512954 + AT_rich Low_complexity Low_complexity 1 30 0 35 71 0 0 chr6 149902762 149902832 -32512410 + AT_rich Low_complexity Low_complexity 1 70 0 607 286 85 39 chr6 149905854 149906137 -32509105 + MLT1H LTR MaLR 12 307 -242 1298 270 51 55 chr6 149906287 149906890 -32508352 - L1ME1 LINE L1 -5 6230 5630 1683 174 15 15 chr6 149906906 149907245 -32507997 - LTR27 LTR ERV1 0 636 298 624 254 0 18 chr6 149907240 149907409 -32507833 - LTR28 LTR ERV1 -854 166 1 * 5975 267 63 43 chr6 149907409 149910069 -32505173 - L1ME1 LINE L1 -614 5621 2877 2341 162 10 5 chr6 149910069 149910470 -32504772 - MER57A LTR ERV1 0 403 1 5975 267 63 43 chr6 149910470 149912624 -32502618 - L1ME1 LINE L1 -3358 2877 767 1396 119 0 10 chr6 149912624 149912874 -32502368 - AluSq SINE Alu 0 332 85 318 246 34 6 chr6 149962939 149963114 -32452128 + (TA)n Simple_repeat Simple_repeat 1 180 0 250 95 65 36 chr6 149963115 149963283 -32451959 + (TTATA)n Simple_repeat Simple_repeat 4 176 0 227 149 69 0 chr6 149963277 149963784 -32451458 + (TA)n Simple_repeat Simple_repeat 1 542 0 * 482 94 44 34 chr6 149963795 149964036 -32451206 + (TA)n Simple_repeat Simple_repeat 1 243 0 197 344 160 15 chr6 149964155 149964286 -32450956 - L3b LINE CR1 -35 1548 1399 479 298 137 18 chr6 149965148 149965321 -32449921 - L1M4 LINE L1 -927 5219 5068 618 39 0 0 chr6 149965321 149965398 -32449844 + (TG)n Simple_repeat Simple_repeat 1 77 0 479 298 137 18 chr6 149965398 149965560 -32449682 - L1M4 LINE L1 -1078 5068 4844 * 1045 147 10 38 chr6 149965557 149965828 -32449414 - L1MB1 LINE L1 -729 5439 5185 * 2415 167 40 18 chr6 149965824 149966445 -32448797 + L1MB1 LINE L1 5440 6167 -1 604 254 23 0 chr6 149966456 149966629 -32448613 - L1M4 LINE L1 -1287 4859 4683 462 331 77 59 chr6 149966631 149966825 -32448417 - L1MEc LINE L1 -5465 931 742 1963 133 3 10 chr6 149966825 149967127 -32448115 - AluSq SINE Alu -13 300 1 462 331 77 59 chr6 149967127 149967813 -32447429 - L1MEc LINE L1 -5654 742 35 358 329 46 5 chr6 149967799 149968015 -32447227 + L1 LINE L1 3609 3833 -2313 * 209 179 0 18 chr6 149968756 149968812 -32446430 + GA-rich Low_complexity Low_complexity 2 56 0 2091 211 46 0 chr6 149968989 149969421 -32445821 + Tigger1 DNA MER2_type 2 453 -1965 2166 120 0 0 chr6 149969451 149969760 -32445482 - AluSc SINE Alu 0 309 1 2229 142 16 16 chr6 149969761 149970134 -32445108 - THE1C LTR MaLR -2 373 1 * 11803 137 20 19 chr6 149970134 149971907 -32443335 + Tigger1 DNA MER2_type 460 2238 -180 1840 127 3 35 chr6 149971907 149972237 -32443005 - AluSx SINE Alu 0 332 12 11803 137 20 19 chr6 149972237 149972419 -32442823 + Tigger1 DNA MER2_type 2238 2418 0 890 211 68 13 chr6 149972461 149972698 -32442544 + LOR1b LTR ERV1 1 250 -211 37 86 0 0 chr6 149972801 149972894 -32442348 + AT_rich Low_complexity Low_complexity 1 93 0 22 0 0 0 chr6 149972938 149972960 -32442282 + AT_rich Low_complexity Low_complexity 1 22 0 516 161 4 33 chr6 149972966 149973528 -32441714 + (TA)n Simple_repeat Simple_repeat 1 545 0 315 224 0 51 chr6 149973531 149973629 -32441613 - L1MC4 LINE L1 -1337 6705 6613 493 109 0 36 chr6 149973633 149973770 -32441472 + (TA)n Simple_repeat Simple_repeat 2 133 0 615 205 5 25 chr6 149973865 149974026 -32441216 - L1PA13 LINE L1 0 6174 6020 30 83 0 0 chr6 149974311 149974383 -32440859 + AT_rich Low_complexity Low_complexity 1 72 0 3661 268 98 50 chr6 149974763 149974830 -32440412 - L1M4c LINE L1 -4543 2416 2354 6590 166 22 19 chr6 149974830 149976126 -32439116 - HSMAR2 DNA Mariner 0 1302 2 3661 268 98 50 chr6 149976126 149976216 -32439026 - L1M4c LINE L1 -4605 2354 2270 2251 100 0 0 chr6 149976216 149976525 -32438717 - AluY SINE Alu -2 309 1 3661 268 98 50 chr6 149976525 149978670 -32436572 - L1M4c LINE L1 -4689 2270 14 219 114 0 0 chr6 149980770 149980805 -32434437 + (CA)n Simple_repeat Simple_repeat 2 36 0 373 221 11 32 chr6 149981148 149981233 -32434009 - Tigger5 DNA MER2_type 0 2323 2239 1632 195 0 3 chr6 149981233 149981535 -32433707 + AluJo SINE Alu 1 301 -11 397 261 0 0 chr6 149981558 149981646 -32433596 + Tigger5 DNA MER2_type 1 88 -2235 230 279 0 15 chr6 149981688 149981756 -32433486 - Tigger5 DNA MER2_type -2256 67 1 1276 204 98 7 chr6 149982289 149982564 -32432678 - AluJo SINE Alu -2 300 1 1014 152 61 30 chr6 149982951 149983148 -32432094 - MLT1B LTR MaLR 0 390 188 725 154 47 40 chr6 149983183 149983332 -32431910 - MLT1B LTR MaLR -196 194 45 * 2024 143 18 3 chr6 149983313 149983648 -32431594 - MER46B DNA MER2_type -21 215 1 450 169 0 0 chr6 149983648 149983725 -32431517 - MLT1B LTR MaLR -313 77 1 238 317 0 0 chr6 149983740 149983800 -32431442 - L2 LINE L2 -58 3255 3196 254 254 198 16 chr6 149983805 149983931 -32431311 + MIR SINE MIR 101 249 -13 550 230 8 16 chr6 149984421 149984547 -32430695 - L2 LINE L2 0 3313 3189 271 273 11 102 chr6 149985180 149985268 -32429974 + L2 LINE L2 3132 3211 -61 340 270 0 0 chr6 149985305 149985405 -32429837 - L1MB8 LINE L1 -2 6176 6077 650 218 6 0 chr6 149985405 149985543 -32429699 + LTR28 LTR ERV1 1 800 -905 1621 247 36 16 chr6 149985638 149986220 -32429022 + L1MC3 LINE L1 2736 3329 -2817 3284 249 48 59 chr6 149986239 149986520 -32428722 + L1MC3 LINE L1 3781 4063 -2083 2074 207 52 5 chr6 149986520 149986960 -32428282 - LOR1b LTR ERV1 0 461 1 3284 249 48 59 chr6 149986960 149987094 -32428148 + L1MC3 LINE L1 4063 4197 -1949 1394 216 35 49 chr6 149987094 149987464 -32427778 + MLT1A1 LTR MaLR 1 365 0 3284 249 48 59 chr6 149987464 149988379 -32426863 + L1MC3 LINE L1 4197 5098 -1048 2194 151 68 27 chr6 149988428 149988839 -32426403 - MSTA LTR MaLR 0 428 1 225 170 0 21 chr6 149988936 149988983 -32426259 - MLT1D LTR MaLR 0 626 581 1232 152 11 34 chr6 149988987 149989347 -32425895 + MSTB1 LTR MaLR 1 432 0 800 224 161 6 chr6 149989347 149989706 -32425536 - MLT1D LTR MaLR -45 460 6 2113 225 78 27 chr6 149989706 149990345 -32424897 + L1MC3 LINE L1 5305 5976 -1809 329 296 81 83 chr6 149990354 149990885 -32424357 - L1M4 LINE L1 -5997 545 16 467 141 54 0 chr6 149991827 149991919 -32423323 + L1MD3 LINE L1 7741 7837 -158 2432 97 46 6 chr6 149992592 149992942 -32422300 - THE1B LTR MaLR 0 364 1 22 80 0 0 chr6 149992971 149993021 -32422221 + AT_rich Low_complexity Low_complexity 1 50 0 1564 206 51 9 chr6 149994141 149994491 -32420751 + MLT1A1 LTR MaLR 1 365 0 216 346 28 37 chr6 149994509 149994616 -32420626 + MER5A DNA MER1_type 1 106 -83 438 317 106 0 chr6 149995074 149995235 -32420007 - MER45A DNA AcHobo 0 178 1 2244 89 0 0 chr6 149995332 149995624 -32419618 + AluSc SINE Alu 1 292 -17 2221 74 0 7 chr6 149995686 149995994 -32419248 - AluSc SINE Alu 0 306 1 28 0 0 0 chr6 149996034 149996062 -32419180 + AT_rich Low_complexity Low_complexity 1 28 0 644 249 121 18 chr6 149997267 149997657 -32417585 - Charlie2 DNA MER1_type -88 2774 2345 5518 184 21 8 chr6 149997657 149998174 -32417068 - L1PB3 LINE L1 -33 6121 5612 1917 150 50 36 chr6 149998174 149998533 -32416709 - THE1B LTR MaLR 0 364 1 5518 184 21 8 chr6 149998533 149999937 -32415305 - L1PB3 LINE L1 -542 5612 4171 555 253 151 26 chr6 149999938 150000184 -32415058 - Charlie2 DNA MER1_type -476 2386 2172 222 118 0 0 chr6 150000184 150000218 -32415024 + (TA)n Simple_repeat Simple_repeat 2 35 0 555 253 151 26 chr6 150000218 150000355 -32414887 - Charlie2 DNA MER1_type -690 2172 1955 613 264 114 22 chr6 150000875 150001102 -32414140 + MIR SINE MIR 1 248 -14 1297 218 105 17 chr6 150001102 150001446 -32413796 - MLT1A2 LTR MaLR 0 374 1 202 176 0 39 chr6 150001901 150001952 -32413290 + T-rich Low_complexity Low_complexity 3 51 0 390 282 39 0 chr6 150002151 150002254 -32412988 + L2 LINE L2 3196 3302 -11 1078 148 15 5 chr6 150002867 150003070 -32412172 - L1MA5A LINE L1 0 6297 6093 1519 248 51 53 chr6 150003265 150003830 -32411412 - L1ME3 LINE L1 -106 6056 5493 414 156 8 12 chr6 150003835 150003921 -32411321 + MLT1A1 LTR MaLR 2 84 -311 3860 214 61 11 chr6 150003924 150004781 -32410461 + L1M1 LINE L1 40 939 -6626 1773 235 71 60 chr6 150004797 150005345 -32409897 - MLT2B3 LTR ERVL 0 554 1 2485 179 14 38 chr6 150005346 150005829 -32409413 + L1M1 LINE L1 967 1437 -6128 2757 94 0 176 chr6 150005829 150005852 -32409390 + THE1B-int LTR MaLR 2 27 -1553 2436 127 0 14 chr6 150005852 150006221 -32409021 + THE1B LTR MaLR 1 364 0 2757 94 0 176 chr6 150006221 150006794 -32408448 + THE1B-int LTR MaLR 27 493 -1087 361 114 0 2 chr6 150006798 150007053 -32408189 + AluSg SINE Alu 1 302 0 1995 118 0 11 chr6 150007062 150007341 -32407901 + AluSg1 SINE Alu 1 276 -33 180 0 0 0 chr6 150007343 150007363 -32407879 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6766 145 25 3 chr6 150007365 150008425 -32406817 + THE1B-int LTR MaLR 498 1580 0 2496 112 22 0 chr6 150008425 150008781 -32406461 + THE1B LTR MaLR 1 364 0 9091 159 39 3 chr6 150008783 150010385 -32404857 + L1M1 LINE L1 1458 3117 -4448 2191 106 0 0 chr6 150010387 150010680 -32404562 - AluSg SINE Alu -17 293 1 875 162 31 149 chr6 150010720 150010942 -32404300 + MLT1A1 LTR MaLR 162 365 0 4335 168 92 23 chr6 150010961 150011862 -32403380 + ERVL-B1 LTR ERVL 4794 5756 -8 1677 243 83 5 chr6 150011862 150012298 -32402944 + MLT2B1 LTR ERVL 1 470 -50 235 229 0 0 chr6 150012361 150012409 -32402833 + MLT2B1 LTR ERVL 507 554 0 1632 273 54 35 chr6 150012422 150013265 -32401977 - L1ME LINE L1 -691 5479 4620 511 283 13 20 chr6 150018415 150018567 -32396675 - MIR SINE MIR -2 260 110 29 0 0 0 chr6 150019406 150019435 -32395807 + AT_rich Low_complexity Low_complexity 1 29 0 639 243 44 24 chr6 150019782 150019988 -32395254 - MER58A DNA MER1_type -5 219 10 2068 75 49 39 chr6 150020699 150021007 -32394235 - AluY SINE Alu 0 311 1 1380 211 32 47 chr6 150021021 150021401 -32393841 - MLT1A2 LTR MaLR 0 374 1 1456 232 107 26 chr6 150023717 150024183 -32391059 - MLT1D LTR MaLR -1 504 1 254 227 68 0 chr6 150025081 150025169 -32390073 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 493 189 85 0 chr6 150025266 150025372 -32389870 + L1MA6 LINE L1 6186 6300 0 2570 196 62 28 chr6 150025431 150026039 -32389203 + L1MB5 LINE L1 5538 6166 -8 1244 220 79 77 chr6 150027172 150027718 -32387524 + MLT1H LTR MaLR 1 547 -2 1521 186 101 14 chr6 150027855 150028210 -32387032 + MLT1B LTR MaLR 1 386 -4 1539 171 38 4 chr6 150028282 150028680 -32386562 + LOR1a LTR ERV1 17 497 0 1895 112 4 4 chr6 150030250 150030553 -32384689 + AluSq SINE Alu 46 348 0 182 368 63 0 chr6 150030644 150030739 -32384503 + MIR SINE MIR 70 170 -92 1734 224 74 79 chr6 150030806 150031013 -32384229 - L1MD2 LINE L1 -7 6352 6145 414 0 0 0 chr6 150031013 150031059 -32384183 + (TG)n Simple_repeat Simple_repeat 1 46 0 1734 224 74 79 chr6 150031059 150031598 -32383644 - L1MD2 LINE L1 -214 6145 5608 2380 114 8 22 chr6 150031598 150031965 -32383277 + THE1B LTR MaLR 3 364 0 1734 224 74 79 chr6 150031965 150031990 -32383252 - L1MD2 LINE L1 -751 5608 5584 326 161 54 75 chr6 150032033 150032126 -32383116 - L1MD2 LINE L1 -635 5607 5517 2297 135 80 8 chr6 150032138 150032537 -32382705 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr6 150032557 150032579 -32382663 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr6 150035729 150035765 -32379477 + AT_rich Low_complexity Low_complexity 1 36 0 541 281 120 34 chr6 150035950 150036217 -32379025 + L2 LINE L2 3023 3312 -1 1955 64 0 128 chr6 150036768 150037095 -32378147 - AluYa5 SINE Alu -26 285 1 23 0 0 0 chr6 150037146 150037169 -32378073 + AT_rich Low_complexity Low_complexity 1 23 0 459 275 22 54 chr6 150037259 150037481 -32377761 + L1ME1 LINE L1 5937 6154 -12 309 322 112 0 chr6 150037496 150037639 -32377603 + L1MEc LINE L1 1626 1784 -4612 385 244 52 0 chr6 150038027 150038162 -32377080 + L1MEc LINE L1 2166 2307 -4089 1054 285 84 10 chr6 150038209 150038981 -32376261 + L1MEc LINE L1 2453 3281 -2934 598 291 55 58 chr6 150039110 150039657 -32375585 + L1M4 LINE L1 4518 5062 -1084 337 250 62 18 chr6 150039687 150039799 -32375443 + MER94 DNA DNA 1 117 -17 6702 179 35 42 chr6 150040080 150041472 -32373770 + L1M1 LINE L1 20 1401 -6164 39 22 0 0 chr6 150041675 150041721 -32373521 + AT_rich Low_complexity Low_complexity 1 46 0 1617 183 0 50 chr6 150042548 150042870 -32372372 - AluJo SINE Alu -4 308 3 1011 194 53 9 chr6 150043200 150043427 -32371815 - L1MB1 LINE L1 -1 6167 5931 5921 110 0 0 chr6 150043732 150044574 -32370668 + L1PA10 LINE L1 5327 6168 0 435 83 0 0 chr6 150045979 150046039 -32369203 + (CA)n Simple_repeat Simple_repeat 2 61 0 232 185 0 99 chr6 150046039 150046120 -32369122 - L1MC4 LINE L1 -1339 6703 6631 2276 86 0 3 chr6 150046776 150047068 -32368174 - AluSq SINE Alu -20 293 3 338 267 42 17 chr6 150047525 150047645 -32367597 - L1ME3 LINE L1 0 6162 6040 572 258 223 19 chr6 150048276 150048652 -32366590 + L1MC4a LINE L1 5771 6223 -1585 * 1129 170 22 9 chr6 150048650 150048873 -32366369 - L1 LINE L1 -2253 3893 3668 420 281 43 47 chr6 150048910 150049077 -32366165 - L1M4 LINE L1 -1945 4595 4428 1837 214 3 3 chr6 150049077 150049442 -32365800 - MER47A DNA MER2_type 0 366 2 420 281 43 47 chr6 150049442 150049527 -32365715 - L1M4 LINE L1 -2112 4428 4344 21 0 0 0 chr6 150050035 150050056 -32365186 + AT_rich Low_complexity Low_complexity 1 21 0 230 359 14 14 chr6 150050675 150050820 -32364422 - L1ME3 LINE L1 -2250 5558 5414 230 246 0 18 chr6 150051101 150051158 -32364084 + (TATG)n Simple_repeat Simple_repeat 1 56 0 412 265 163 0 chr6 150051435 150051582 -32363660 - MLT2E LTR ERVL 0 628 458 1594 163 21 17 chr6 150051716 150052004 -32363238 + MSTB1 LTR MaLR 144 432 0 1863 318 36 14 chr6 150052214 150052992 -32362250 - ERVL LTR ERVL -392 5372 4578 2040 330 26 6 chr6 150052993 150053797 -32361445 - ERVL LTR ERVL -1550 4214 3395 2729 253 53 17 chr6 150053888 150055023 -32360219 - L1MCa LINE L1 -2906 3634 2464 2305 114 42 3 chr6 150055031 150055390 -32359852 - THE1C LTR MaLR -2 373 1 4062 187 9 6 chr6 150055390 150056199 -32359043 - L1MA4 LINE L1 -15 6467 5657 2144 105 0 17 chr6 150056200 150056496 -32358746 - AluSc SINE Alu -18 291 1 247 133 0 0 chr6 150056509 150056554 -32358688 - Alu SINE Alu -8 294 250 12622 189 51 11 chr6 150056561 150058647 -32356595 - L1MA4 LINE L1 -743 5585 3428 2099 99 34 10 chr6 150058647 150058939 -32356303 - AluSc SINE Alu -10 299 1 12622 189 51 11 chr6 150058939 150059850 -32355392 - L1MA4 LINE L1 -2900 3428 2555 6133 166 45 27 chr6 150059835 150061072 -32354170 - L1MA4 LINE L1 -4068 1260 2 * 2816 258 98 25 chr6 150061068 150062322 -32352920 - L1MCa LINE L1 -4047 2493 1148 * 667 232 25 25 chr6 150062298 150062496 -32352746 + L1MC5 LINE L1 7716 7913 -48 * 26 50 0 0 chr6 150062545 150062585 -32352657 + AT_rich Low_complexity Low_complexity 1 40 0 396 0 0 0 chr6 150065190 150065234 -32350008 + (TA)n Simple_repeat Simple_repeat 2 45 0 45 34 0 0 chr6 150066613 150066672 -32348570 + AT_rich Low_complexity Low_complexity 1 59 0 2496 43 0 7 chr6 150067178 150067482 -32347760 - AluY SINE Alu -9 302 1 4304 259 83 49 chr6 150068117 150068353 -32346889 + L1MB8 LINE L1 10 237 -6722 4521 144 52 6 chr6 150068353 150069143 -32346099 - LTR1B LTR ERV1 0 826 1 4304 259 83 49 chr6 150069143 150070026 -32345216 + L1MB8 LINE L1 237 1089 -5870 2230 192 21 28 chr6 150070026 150070307 -32344935 - MLT1C LTR MaLR 0 467 189 2196 115 0 10 chr6 150070307 150070620 -32344622 - AluSx SINE Alu -2 310 1 2230 192 21 28 chr6 150070620 150070807 -32344435 - MLT1C LTR MaLR -278 189 2 4304 259 83 49 chr6 150070807 150071629 -32343613 + L1MB8 LINE L1 1089 2046 -4913 2130 131 3 0 chr6 150071629 150071935 -32343307 - AluSp SINE Alu -6 307 1 4304 259 83 49 chr6 150071935 150072320 -32342922 + L1MB8 LINE L1 2046 2416 -4543 1205 217 11 0 chr6 150072371 150072638 -32342604 + L1MB8 LINE L1 4237 4506 -2451 418 177 62 0 chr6 150072644 150072740 -32342502 - L1 LINE L1 -818 5328 5227 * 2272 184 28 163 chr6 150072732 150073159 -32342083 + L1MB8 LINE L1 5237 5720 -1269 2717 22 0 3 chr6 150073159 150073471 -32341771 - AluY SINE Alu 0 311 1 2272 184 28 163 chr6 150073471 150073630 -32341612 + L1MB8 LINE L1 5720 5899 -1090 196 29 29 29 chr6 150073630 150073664 -32341578 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2272 184 28 163 chr6 150073664 150073986 -32341256 + L1MB8 LINE L1 5899 5949 -1040 2472 112 3 0 chr6 150073986 150074353 -32340889 - L1PA13 LINE L1 -2 6161 5794 2272 184 28 163 chr6 150074353 150074649 -32340593 + L1MB8 LINE L1 5949 6283 -706 1671 229 88 13 chr6 150074654 150075129 -32340113 + L1MB8 LINE L1 6465 6975 -14 261 71 24 0 chr6 150075416 150075458 -32339784 + MADE1 DNA Mariner 4 46 -34 190 377 54 8 chr6 150075459 150075589 -32339653 + MIR SINE MIR 41 176 -86 931 108 8 0 chr6 150075817 150075946 -32339296 + AluSg/x SINE Alu 164 293 -19 223 265 88 0 chr6 150078523 150078591 -32336651 + L3 LINE CR1 1244 1317 -260 188 337 12 12 chr6 150078859 150078942 -32336300 - MIR SINE MIR -68 140 58 499 336 147 10 chr6 150080227 150080539 -32334703 + L3 LINE CR1 1051 1405 -172 228 139 141 0 chr6 150080894 150080976 -32334266 + MIR SINE MIR 95 194 -68 599 277 109 27 chr6 150081060 150081316 -32333926 + MLT1J1 LTR MaLR 5 281 -165 1076 215 86 0 chr6 150081642 150081921 -32333321 + MER63 DNA MER1_type 759 1061 -1 246 292 21 10 chr6 150081930 150082026 -32333216 + MLT1J1 LTR MaLR 350 446 0 2345 194 21 15 chr6 150084058 150084527 -32330715 + MER70A LTR ERVL 1 472 0 25 51 0 0 chr6 150085981 150086020 -32329222 + AT_rich Low_complexity Low_complexity 1 39 0 459 366 37 5 chr6 150086089 150086305 -32328937 - L3 LINE CR1 -454 1123 901 2036 151 120 8 chr6 150086343 150086727 -32328515 - MSTA LTR MaLR -1 427 1 205 373 20 0 chr6 150087005 150087107 -32328135 - MIR3 SINE MIR -13 195 92 22 56 0 0 chr6 150087408 150087444 -32327798 + AT_rich Low_complexity Low_complexity 1 36 0 611 269 113 72 chr6 150088372 150088762 -32326480 - MER20B DNA MER1_type -335 448 43 2562 48 0 0 chr6 150090240 150090549 -32324693 + AluY SINE Alu 1 309 -2 186 377 14 0 chr6 150092337 150092406 -32322836 + L2 LINE L2 3201 3270 -2 32 26 0 0 chr6 150092428 150092467 -32322775 + AT_rich Low_complexity Low_complexity 1 39 0 272 272 340 11 chr6 150092945 150093136 -32322106 - MIR SINE MIR -1 261 8 203 368 124 35 chr6 150093201 150093482 -32321760 + L2 LINE L2 1978 2297 -1017 351 0 0 0 chr6 150093482 150093521 -32321721 + (TA)n Simple_repeat Simple_repeat 1 39 0 203 368 124 35 chr6 150093521 150093587 -32321655 + L2 LINE L2 2297 2356 -958 3901 290 54 23 chr6 150093714 150095341 -32319901 + ERVL LTR ERVL 3294 5039 -528 27 87 0 0 chr6 150095341 150095410 -32319832 + AT_rich Low_complexity Low_complexity 1 69 0 675 319 72 20 chr6 150095421 150095878 -32319364 + ERVL LTR ERVL 5048 5528 -236 323 230 130 43 chr6 150096121 150096282 -32318960 + LTR41 LTR ERVL 21 195 -578 292 145 58 43 chr6 150096867 150096936 -32318306 + L1MEc LINE L1 1887 1956 -4440 284 290 114 23 chr6 150097434 150097610 -32317632 + L1MEc LINE L1 2456 2647 -3568 787 304 65 23 chr6 150097620 150098219 -32317023 - L1M4 LINE L1 -2107 4039 3416 2310 103 0 0 chr6 150098332 150098642 -32316600 - AluSg SINE Alu 0 310 1 369 238 38 9 chr6 150098682 150098787 -32316455 - L1M4 LINE L1 -3159 2987 2880 310 293 0 0 chr6 150098863 150098945 -32316297 - L1ME3 LINE L1 -83 6079 5998 831 271 56 4 chr6 150098970 150099239 -32316003 - L1ME3 LINE L1 -253 5909 5627 425 356 80 22 chr6 150099306 150099954 -32315288 - L1M4 LINE L1 -3344 2802 2117 10030 217 75 29 chr6 150099969 150101131 -32314111 - Charlie6 DNA MER1_type -6 3494 2388 1858 169 0 26 chr6 150101131 150101439 -32313803 - AluJb SINE Alu -12 300 1 10030 217 75 29 chr6 150101439 150101970 -32313272 - Charlie6 DNA MER1_type -1112 2388 1883 531 0 0 0 chr6 150101970 150102029 -32313213 + (TG)n Simple_repeat Simple_repeat 1 59 0 10030 217 75 29 chr6 150102029 150103198 -32312044 - Charlie6 DNA MER1_type -1617 1883 497 233 152 0 0 chr6 150103303 150103336 -32311906 + MLT1G1 LTR MaLR 1 33 -562 2340 170 9 19 chr6 150103617 150104047 -32311195 - MSTB LTR MaLR 0 426 1 25 0 0 0 chr6 150104070 150104095 -32311147 + AT_rich Low_complexity Low_complexity 1 25 0 1362 195 23 87 chr6 150104151 150104541 -32310701 - MLT1A1 LTR MaLR 0 365 1 1431 133 137 23 chr6 150106764 150107051 -32308191 + AluSx SINE Alu 1 316 0 31 44 0 0 chr6 150108030 150108075 -32307167 + AT_rich Low_complexity Low_complexity 1 45 0 2321 243 34 22 chr6 150109075 150109718 -32305524 + MER82 DNA MER2_type 1 651 -2 458 230 224 7 chr6 150109930 150110082 -32305160 - MER5A DNA MER1_type -4 185 1 21 36 0 0 chr6 150110628 150110656 -32304586 + AT_rich Low_complexity Low_complexity 1 28 0 282 253 13 0 chr6 150110686 150110765 -32304477 + Charlie7 DNA MER1_type 397 476 -2136 608 287 46 0 chr6 150110893 150111088 -32304154 + Charlie7 DNA MER1_type 1403 1606 -1006 350 331 46 13 chr6 150111378 150111529 -32303713 + MIR SINE MIR 16 171 -91 21 0 0 0 chr6 150112197 150112218 -32303024 + AT_rich Low_complexity Low_complexity 1 21 0 455 343 48 19 chr6 150112865 150112943 -32302299 - MIR SINE MIR -32 230 156 2061 212 79 30 chr6 150112943 150113438 -32301804 - MLT2B1 LTR ERVL 0 520 2 455 343 48 19 chr6 150113438 150113569 -32301673 - MIR SINE MIR -106 156 15 284 292 0 14 chr6 150113612 150113684 -32301558 + L2 LINE L2 3243 3313 0 218 176 20 20 chr6 150113943 150113994 -32301248 + T-rich Low_complexity Low_complexity 4 54 0 21 71 0 0 chr6 150115851 150115893 -32299349 + AT_rich Low_complexity Low_complexity 1 42 0 198 333 261 0 chr6 150116091 150116256 -32298986 + L2 LINE L2 1982 2189 -1125 * 288 306 61 41 chr6 150116255 150116402 -32298840 + MIR SINE MIR 81 230 -32 1658 283 28 0 chr6 150116453 150116881 -32298361 + L2 LINE L2 2188 2627 -687 411 252 133 7 chr6 150116901 150117036 -32298206 + MER5C DNA MER1_type 173 324 0 282 288 59 30 chr6 150117156 150117440 -32297802 - L1MC5 LINE L1 0 8042 7636 31 68 0 0 chr6 150117570 150117629 -32297613 + AT_rich Low_complexity Low_complexity 1 59 0 304 302 87 46 chr6 150119150 150119318 -32295924 + MIR SINE MIR 2 170 -65 1532 175 41 10 chr6 150119419 150119710 -32295532 - AluJb SINE Alu -6 306 7 225 0 0 0 chr6 150119716 150119741 -32295501 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 2107 110 20 0 chr6 150119743 150120035 -32295207 - AluSx SINE Alu -12 300 3 3727 65 83 18 chr6 150120305 150120848 -32294394 + MER4E LTR ERV1 1 578 -188 594 0 0 0 chr6 150120848 150120919 -32294323 - AluY SINE Alu -13 299 229 335 308 132 11 chr6 150120921 150121103 -32294139 - L1ME3A LINE L1 -285 6279 6076 36 23 0 0 chr6 150121997 150122040 -32293202 + AT_rich Low_complexity Low_complexity 1 43 0 316 250 94 33 chr6 150122063 150122307 -32292935 - L1ME3A LINE L1 -1617 4923 4665 23 33 0 0 chr6 150122351 150122381 -32292861 + AT_rich Low_complexity Low_complexity 1 30 0 1104 235 52 42 chr6 150122486 150122764 -32292478 + AluJb SINE Alu 1 284 -28 410 0 20 0 chr6 150122764 150122814 -32292428 + (CA)n Simple_repeat Simple_repeat 2 52 0 1104 235 52 42 chr6 150122814 150122841 -32292401 + AluJb SINE Alu 284 309 -3 1856 142 56 0 chr6 150122933 150123221 -32292021 - AluSx SINE Alu -8 304 1 442 247 151 58 chr6 150123248 150123507 -32291735 - L1ME3A LINE L1 -2190 4350 4068 876 314 118 52 chr6 150123521 150124289 -32290953 - L1ME3A LINE L1 -2563 3977 3103 2204 92 3 0 chr6 150124289 150124584 -32290658 - AluSg SINE Alu -12 298 3 876 314 118 52 chr6 150124584 150124981 -32290261 - L1ME3A LINE L1 -3437 3103 2734 347 303 19 32 chr6 150125101 150125256 -32289986 - L1ME3A LINE L1 -3973 2567 2415 2260 92 0 16 chr6 150125317 150125633 -32289609 - AluY SINE Alu 0 311 1 420 295 80 53 chr6 150125840 150126253 -32288989 - L1ME3A LINE L1 -4445 2095 1672 2198 88 7 0 chr6 150126277 150126591 -32288651 + AluSp SINE Alu 1 316 0 322 252 163 0 chr6 150126934 150127081 -32288161 - L1ME3A LINE L1 -5947 583 413 272 179 21 42 chr6 150127933 150128028 -32287214 + (TATAA)n Simple_repeat Simple_repeat 2 94 0 383 293 46 6 chr6 150128500 150128674 -32286568 + L1MC5 LINE L1 5724 5904 -1904 23 33 0 0 chr6 150128721 150128751 -32286491 + AT_rich Low_complexity Low_complexity 1 30 0 528 216 0 0 chr6 150128829 150128945 -32286297 - L1PA15 LINE L1 -6 6159 6044 * 23324 46 0 0 chr6 150128935 150132656 -32282586 + L1PA5 LINE L1 2423 6151 -3 2140 122 27 0 chr6 150132668 150133004 -32282238 - L1P4 LINE L1 -517 5648 5304 455 212 42 2 chr6 150133376 150133493 -32281749 - MER2 DNA MER2_type -96 143 14 296 280 79 3 chr6 150133782 150133953 -32281289 + L1MC5 LINE L1 6723 6992 -1050 745 214 36 143 chr6 150134047 150134238 -32281004 + L1MC5 LINE L1 6957 7167 -794 1952 108 23 16 chr6 150134238 150134545 -32280697 + AluSx SINE Alu 1 309 -3 745 214 36 143 chr6 150134545 150134690 -32280552 + L1MC5 LINE L1 7167 7230 -731 487 123 0 12 chr6 150134690 150134771 -32280471 + MADE1 DNA Mariner 1 80 0 745 214 36 143 chr6 150134771 150134910 -32280332 + L1MC5 LINE L1 7230 7382 -579 265 223 85 11 chr6 150135015 150135109 -32280133 + L1MC5 LINE L1 7452 7552 -409 1344 104 0 0 chr6 150135129 150135312 -32279930 + AluSg/x SINE Alu 127 309 0 553 269 45 55 chr6 150135330 150135638 -32279604 + L1MC5 LINE L1 7609 7913 -48 8491 34 39 0 chr6 150136979 150138027 -32277215 - L1PA3 LINE L1 -1109 5037 3949 7783 19 0 0 chr6 150138027 150139167 -32276075 + L1PA3 LINE L1 5013 6152 -3 2394 68 0 0 chr6 150139315 150139611 -32275631 - AluY SINE Alu -15 296 1 435 222 79 24 chr6 150139946 150140072 -32275170 - MIR SINE MIR -93 169 37 779 223 28 135 chr6 150140216 150140571 -32274671 + MLT1A2 LTR MaLR 40 356 -18 288 283 35 18 chr6 150141589 150141702 -32273540 - MIR SINE MIR -1 261 147 21 0 0 0 chr6 150141822 150141843 -32273399 + AT_rich Low_complexity Low_complexity 1 21 0 396 303 16 8 chr6 150142096 150142218 -32273024 - L2 LINE L2 -5 3308 3186 359 292 201 26 chr6 150142342 150142496 -32272746 + MER5A DNA MER1_type 9 189 0 4187 226 92 123 chr6 150143540 150144143 -32271099 - L1MD3 LINE L1 -10 8780 8160 330 193 60 24 chr6 150144143 150144226 -32271016 - MLT1F1 LTR MaLR -439 128 43 4187 226 92 123 chr6 150144226 150145972 -32269270 - L1MD3 LINE L1 -630 8160 6467 2163 114 48 31 chr6 150145972 150146330 -32268912 - THE1B LTR MaLR 0 364 1 4187 226 92 123 chr6 150146330 150147022 -32268220 - L1MD3 LINE L1 -2323 6467 5755 1157 256 73 42 chr6 150147040 150147614 -32267628 - L1MD3 LINE L1 -1255 5686 5095 4342 273 68 17 chr6 150147625 150148002 -32267240 - L1MD3 LINE L1 -1975 4966 4610 2065 135 3 0 chr6 150148002 150148313 -32266929 - AluSx SINE Alu 0 312 1 4342 273 68 17 chr6 150148313 150149666 -32265576 - L1MD3 LINE L1 -2331 4610 3124 1515 195 79 10 chr6 150149666 150149958 -32265284 - AluJb SINE Alu 0 312 1 4342 273 68 17 chr6 150149958 150150511 -32264731 - L1MD3 LINE L1 -3817 3124 2600 1464 277 59 40 chr6 150150508 150150600 -32264642 - L1MD3 LINE L1 -4728 2213 2124 * 213 39 0 0 chr6 150150600 150150626 -32264616 + (TG)n Simple_repeat Simple_repeat 2 27 0 1464 277 59 40 chr6 150150626 150151576 -32263666 - L1MD3 LINE L1 -4817 2124 1135 26 50 0 0 chr6 150151910 150151950 -32263292 + AT_rich Low_complexity Low_complexity 1 40 0 344 286 0 27 chr6 150153816 150153928 -32261314 - L2 LINE L2 -50 3263 3155 1388 161 37 70 chr6 150154081 150154436 -32260806 - MER61A LTR ERV1 0 343 1 24417 102 40 19 chr6 150154437 150154784 -32260458 - MER61A-int LTR ERV1 -1 5216 4878 207 0 0 0 chr6 150154784 150154807 -32260435 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 24417 102 40 19 chr6 150154807 150158235 -32257007 - MER61A-int LTR ERV1 -339 4878 1408 3069 177 100 34 chr6 150158229 150158957 -32256285 - MER61A-int LTR ERV1 -4440 777 2 * 1249 207 87 25 chr6 150158957 150159280 -32255962 - MER61A LTR ERV1 0 343 1 485 269 50 39 chr6 150161268 150161550 -32253692 - MER61A LTR ERV1 -2 563 279 267 238 27 92 chr6 150161634 150161778 -32253464 - MER34B LTR ERV1 -400 142 1 2434 223 15 22 chr6 150161935 150162641 -32252601 - LTR27 LTR ERV1 -2 634 3 355 320 69 35 chr6 150163143 150163346 -32251896 + L1ME3A LINE L1 5472 5681 -481 2309 102 0 0 chr6 150163368 150163672 -32251570 + AluY SINE Alu 1 304 -7 232 254 71 85 chr6 150163710 150163934 -32251308 + L1ME3A LINE L1 5731 5951 -219 23 0 0 0 chr6 150165064 150165087 -32250155 + AT_rich Low_complexity Low_complexity 1 23 0 2219 114 0 0 chr6 150165323 150165630 -32249612 + AluSc SINE Alu 1 307 -2 1112 163 183 0 chr6 150165711 150165997 -32249245 + AluJo SINE Alu 2 331 0 22 35 0 0 chr6 150166943 150166972 -32248270 + AT_rich Low_complexity Low_complexity 1 29 0 748 229 81 19 chr6 150167573 150167783 -32247459 - AluJb SINE Alu -18 294 72 6777 179 34 57 chr6 150167937 150169395 -32245847 - MER52A LTR ERV1 0 1755 365 594 241 37 69 chr6 150169907 150170123 -32245119 - MER52A LTR ERV1 -1546 209 1 198 0 0 0 chr6 150170479 150170501 -32244741 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 742 247 30 43 chr6 150171751 150171982 -32243260 + MER97b DNA MER1_type? 1 228 -825 180 77 0 0 chr6 150171982 150172008 -32243234 + (CA)n Simple_repeat Simple_repeat 1 26 0 360 43 0 0 chr6 150172018 150172064 -32243178 + (TA)n Simple_repeat Simple_repeat 1 46 0 395 292 57 50 chr6 150172069 150172367 -32242875 + HAL1 LINE L1 1237 1536 -971 392 269 50 8 chr6 150172589 150172708 -32242534 - MIR SINE MIR -7 255 132 383 288 131 41 chr6 150173002 150173658 -32241584 + L1M4 LINE L1 2111 2825 -3321 1007 293 71 49 chr6 150174698 150175206 -32240036 - MLT1H1 LTR MaLR 0 555 37 183 206 0 0 chr6 150175915 150175949 -32239293 + L2 LINE L2 1676 1709 -1605 2090 184 93 30 chr6 150177409 150177969 -32237273 + LTR49 LTR ERV1 1 595 0 1202 129 5 5 chr6 150178067 150178253 -32236989 - MER4C LTR ERV1 0 465 280 2815 172 23 90 chr6 150178253 150179044 -32236198 + LTR8 LTR ERV1 1 691 0 1628 138 83 4 chr6 150179044 150179297 -32235945 - MER4C LTR ERV1 -183 282 8 328 245 38 9 chr6 150180174 150180280 -32234962 - L1ME4a LINE L1 -61 6060 5952 1753 163 42 121 chr6 150180977 150181431 -32233811 - MER47B DNA MER2_type 0 418 1 197 139 23 0 chr6 150181553 150181596 -32233646 + (TA)n Simple_repeat Simple_repeat 2 45 0 647 191 91 10 chr6 150182248 150182447 -32232795 - Charlie1 DNA MER1_type 0 2761 2547 201 121 0 0 chr6 150183011 150183044 -32232198 + (TGAG)n Simple_repeat Simple_repeat 2 34 0 838 170 45 40 chr6 150183488 150183688 -32231554 - L1MC3 LINE L1 -27 7758 7558 932 209 45 33 chr6 150184231 150184475 -32230767 - L1MC3 LINE L1 -207 7578 7332 530 258 82 21 chr6 150184891 150185085 -32230157 - MLT1D LTR MaLR 0 505 300 382 244 0 0 chr6 150185092 150185170 -32230072 - MLT1H1 LTR MaLR -427 78 1 683 274 107 8 chr6 150185896 150186148 -32229094 + MLT1G LTR MaLR 13 289 -301 283 138 15 15 chr6 150186163 150186228 -32229014 + GA-rich Low_complexity Low_complexity 2 66 0 407 284 13 48 chr6 150186284 150186443 -32228799 + MLT1G LTR MaLR 446 585 -5 338 294 14 48 chr6 150186948 150187094 -32228148 - L2 LINE L2 -33 3280 3140 640 202 92 29 chr6 150187115 150187288 -32227954 - MER3 DNA MER1_type -16 193 10 1834 92 110 4 chr6 150188265 150188537 -32226705 - AluYa8 SINE Alu -9 301 1 711 171 8 0 chr6 150188622 150188745 -32226497 + FLAM_C SINE Alu 1 124 -19 5351 142 22 5 chr6 150189391 150190331 -32224911 - L1PA13 LINE L1 -19 6144 5188 412 305 101 26 chr6 150190430 150190738 -32224504 + L1ME3A LINE L1 4992 5322 -824 491 334 46 2 chr6 150190800 150191231 -32224011 + L1ME3A LINE L1 5408 5938 -232 569 332 131 29 chr6 150191982 150192537 -32222705 + L1MCa LINE L1 927 1749 -4858 725 261 57 1 chr6 150192537 150192757 -32222485 + L1ME1 LINE L1 5370 5609 -555 2104 256 75 37 chr6 150192772 150193476 -32221766 - LTR68 LTR ERV1 -9 731 1 1470 291 22 29 chr6 150193476 150194030 -32221212 + L1ME1 LINE L1 5610 6159 -7 4511 189 47 11 chr6 150194138 150195099 -32220143 - L1MC2 LINE L1 -10 6334 5340 615 289 101 36 chr6 150195132 150195598 -32219644 + L1MCa LINE L1 2261 2735 -3691 1555 195 7 3 chr6 150195598 150195890 -32219352 - AluJb SINE Alu -19 293 1 615 289 101 36 chr6 150195890 150195955 -32219287 + L1MCa LINE L1 2735 2794 -3632 1571 195 17 46 chr6 150196281 150196328 -32218914 - MLT1A1 LTR MaLR -24 341 294 1996 128 13 3 chr6 150196328 150196506 -32218736 - AluSx SINE Alu -4 308 124 243 0 0 0 chr6 150196506 150196533 -32218709 + (TG)n Simple_repeat Simple_repeat 2 28 0 1996 128 13 3 chr6 150196533 150196658 -32218584 - AluSx SINE Alu -188 124 2 1571 195 17 46 chr6 150196658 150196958 -32218284 - MLT1A1 LTR MaLR -71 294 4 261 0 0 0 chr6 150196975 150197004 -32218238 + (TG)n Simple_repeat Simple_repeat 2 30 0 1538 256 92 49 chr6 150197521 150198052 -32217190 + MLT2B3 LTR ERVL 1 554 0 1171 225 64 32 chr6 150198474 150198847 -32216395 + LTR52 LTR ERVL 1 385 -36 1286 216 65 0 chr6 150200781 150201073 -32214169 + AluJo SINE Alu 1 311 -1 2457 216 67 8 chr6 150202818 150203409 -32211833 + MLT1E2 LTR MaLR 1 374 0 192 381 95 30 chr6 150204337 150204505 -32210737 - MIR SINE MIR -74 188 10 34 42 0 0 chr6 150204977 150205025 -32210217 + AT_rich Low_complexity Low_complexity 1 48 0 688 329 85 16 chr6 150205065 150205430 -32209812 - L2 LINE L2 -1225 2089 1700 23 0 0 0 chr6 150205432 150205455 -32209787 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr6 150205489 150205531 -32209711 + AT_rich Low_complexity Low_complexity 1 42 0 1440 227 10 3 chr6 150205545 150205845 -32209397 - AluJb SINE Alu -10 302 1 309 203 149 20 chr6 150205892 150206040 -32209202 + Zaphod DNA AcHobo 3590 3756 -275 5465 128 2 2 chr6 150206040 150206840 -32208402 + THE1C-int LTR MaLR 777 1576 -4 1593 176 94 3 chr6 150206847 150207188 -32208054 + THE1C LTR MaLR 4 375 0 638 300 79 64 chr6 150207219 150207626 -32207616 - L2 LINE L2 -2371 943 531 228 35 0 0 chr6 150207740 150207769 -32207473 + (CA)n Simple_repeat Simple_repeat 2 30 0 270 227 0 0 chr6 150207776 150207820 -32207422 - MER2 DNA MER2_type -1 344 301 * 883 215 27 5 chr6 150207817 150208003 -32207239 - MER2 DNA MER2_type -149 196 7 188 163 0 20 chr6 150208009 150208058 -32207184 + (TA)n Simple_repeat Simple_repeat 1 48 0 1033 266 40 48 chr6 150209676 150210150 -32205092 - L1ME1 LINE L1 -4 6162 5693 2119 107 0 0 chr6 150210178 150210498 -32204744 - AluSq SINE Alu 0 320 1 21 36 0 0 chr6 150212297 150212325 -32202917 + AT_rich Low_complexity Low_complexity 1 28 0 189 274 242 0 chr6 150212444 150212568 -32202674 - MIR SINE MIR -8 254 101 337 313 45 34 chr6 150213279 150213458 -32201784 + MER5A DNA MER1_type 4 184 -5 1049 251 75 60 chr6 150213513 150213848 -32201394 + MLT1E LTR MaLR 218 557 -36 29 0 0 0 chr6 150213969 150213998 -32201244 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr6 150214102 150214153 -32201089 + AT_rich Low_complexity Low_complexity 1 51 0 1033 213 17 109 chr6 150214768 150214876 -32200366 + MER58B DNA MER1_type 12 128 -2292 1615 153 60 44 chr6 150214876 150215243 -32199999 + THE1C LTR MaLR 1 373 -2 1464 196 0 25 chr6 150215243 150215519 -32199723 - AluJb SINE Alu -42 270 2 1033 213 17 109 chr6 150215519 150215770 -32199472 + MER58B DNA MER1_type 126 340 -1 225 178 0 0 chr6 150215986 150216031 -32199211 + (CA)n Simple_repeat Simple_repeat 2 46 0 25 51 0 0 chr6 150216869 150216908 -32198334 + AT_rich Low_complexity Low_complexity 1 39 0 605 160 130 18 chr6 150219810 150219979 -32195263 + MER53 DNA DNA 1 188 -1 216 0 0 0 chr6 150220377 150220401 -32194841 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 25 75 0 0 chr6 150220406 150220459 -32194783 + AT_rich Low_complexity Low_complexity 1 53 0 2116 229 58 8 chr6 150220617 150220651 -32194591 - MLT1D LTR MaLR 0 505 474 1125 226 25 64 chr6 150220651 150221009 -32194233 - MER2 DNA MER2_type 0 344 1 2116 229 58 8 chr6 150221009 150221455 -32193787 - MLT1D LTR MaLR -31 474 1 262 359 100 41 chr6 150221488 150221808 -32193434 - L2 LINE L2 -2 3270 2932 574 371 85 14 chr6 150222244 150222751 -32192491 - L2 LINE L2 -892 2422 1880 5714 97 3 31 chr6 150223235 150224084 -32191158 - L1PB1 LINE L1 0 6151 5326 186 43 0 0 chr6 150224086 150224109 -32191133 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 909 142 7 0 chr6 150224111 150224252 -32190990 - AluSg/x SINE Alu -31 281 140 5153 206 17 42 chr6 150224257 150225588 -32189654 - L1PB1 LINE L1 -819 5327 4030 262 245 14 177 chr6 150226221 150226368 -32188874 - MIR SINE MIR -69 193 71 2368 77 3 3 chr6 150226660 150226970 -32188272 - AluY SINE Alu -1 310 1 824 186 5 58 chr6 150227546 150227734 -32187508 + AluJ SINE Alu 2 179 -133 451 194 112 0 chr6 150227830 150227951 -32187291 + AluJ SINE Alu 176 307 0 1254 278 67 26 chr6 150227981 150228520 -32186722 + L1MC4a LINE L1 5455 6015 -1793 456 229 69 58 chr6 150228521 150228709 -32186533 + L1MC4a LINE L1 6058 6247 -1561 980 254 119 36 chr6 150228736 150228874 -32186368 + L1MC4 LINE L1 6794 6919 -1123 1449 205 102 3 chr6 150228874 150229206 -32186036 + MLT1A1 LTR MaLR 1 365 0 980 254 119 36 chr6 150229206 150230014 -32185228 + L1MC4 LINE L1 6919 7924 -118 606 141 0 0 chr6 150230055 150230183 -32185059 + (GA)n Simple_repeat Simple_repeat 1 128 0 537 161 0 0 chr6 150230234 150230364 -32184878 + GA-rich Low_complexity Low_complexity 1 130 0 540 200 0 0 chr6 150230417 150230552 -32184690 + GA-rich Low_complexity Low_complexity 1 135 0 302 252 57 8 chr6 150230564 150230687 -32184555 + L1MC4 LINE L1 7914 8042 0 25 65 0 0 chr6 150230687 150230733 -32184509 + AT_rich Low_complexity Low_complexity 1 46 0 539 311 53 26 chr6 150230758 150231007 -32184235 + MIR SINE MIR 3 252 -10 15128 113 4 10 chr6 150232077 150234391 -32180851 - L1P LINE L1 -2506 3640 1341 9199 96 2 1 chr6 150234391 150236460 -32178782 + L1PA7 LINE L1 4048 6139 -15 2080 128 0 16 chr6 150236684 150236990 -32178252 - AluSx SINE Alu -11 301 1 2173 110 0 0 chr6 150237020 150237311 -32177931 - AluSg SINE Alu -19 291 1 416 360 88 19 chr6 150239513 150239821 -32175421 + L2 LINE L2 2968 3296 -17 2564 106 11 3 chr6 150239938 150240306 -32174936 - THE1C LTR MaLR 0 375 5 2700 276 81 25 chr6 150242211 150243298 -32171944 + L1M4 LINE L1 2862 4043 -2103 261 0 0 0 chr6 150243298 150243327 -32171915 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2700 276 81 25 chr6 150243327 150243608 -32171634 + L1M4 LINE L1 4043 4307 -1839 202 405 63 0 chr6 150243705 150243831 -32171411 + L2 LINE L2 3139 3272 0 1705 174 78 46 chr6 150243907 150244264 -32170978 - LTR54B LTR ERV1 -7 491 114 563 74 25 0 chr6 150244264 150244345 -32170897 - L1PA8 LINE L1 -2 6170 6088 1705 174 78 46 chr6 150244345 150244463 -32170779 - LTR54B LTR ERV1 -384 114 1 1577 189 8 55 chr6 150246451 150246816 -32168426 + MER7A DNA MER2_type 1 346 0 241 250 0 62 chr6 150247916 150247996 -32167246 + L1MC4 LINE L1 6628 6702 -1340 230 231 0 0 chr6 150247971 150248023 -32167219 - L1MC4 LINE L1 -1339 6703 6652 * 306 250 0 0 chr6 150248032 150248136 -32167106 + (TA)n Simple_repeat Simple_repeat 1 104 0 207 0 0 0 chr6 150250844 150250867 -32164375 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 7088 47 2 0 chr6 150250867 150252020 -32163222 - L1PA5 LINE L1 -14 6140 4983 472 322 31 55 chr6 150252481 150252736 -32162506 - MIR SINE MIR -13 249 1 2678 277 65 29 chr6 150253007 150254408 -32160834 + L1ME1 LINE L1 3107 4558 -1588 2689 272 40 16 chr6 150254465 150255636 -32159606 + L1ME1 LINE L1 4963 6162 -4 241 326 13 2 chr6 150255647 150255725 -32159517 - MIR SINE MIR -100 108 30 223 214 36 107 chr6 150255908 150255938 -32159304 + MER91C DNA MER1_type 61 92 -48 2532 182 15 2 chr6 150255938 150256395 -32158847 + MLT1C LTR MaLR 3 465 -2 223 214 36 107 chr6 150256395 150256448 -32158794 + MER91C DNA MER1_type 92 138 -2 819 289 121 5 chr6 150258199 150258586 -32156656 - L1ME3A LINE L1 -22 6148 5717 1211 234 83 19 chr6 150258904 150259216 -32156026 + MLT1A1 LTR MaLR 31 362 -3 202 318 0 0 chr6 150259372 150259435 -32155807 + (TA)n Simple_repeat Simple_repeat 1 63 0 5828 200 24 27 chr6 150259435 150261367 -32153875 - L1MC1 LINE L1 -1 6750 4826 1115 254 20 3 chr6 150261342 150261645 -32153597 - L1MC1 LINE L1 -2291 4273 3966 * 309 68 0 0 chr6 150261833 150261877 -32153365 + (TC)n Simple_repeat Simple_repeat 1 44 0 2454 259 68 39 chr6 150261894 150264591 -32150651 - L1MC1 LINE L1 -2994 3570 588 1013 234 71 103 chr6 150264597 150265418 -32149824 - L1M4 LINE L1 -1151 4995 4202 2830 6 0 6 chr6 150265851 150266168 -32149074 - AluYb8 SINE Alu -2 316 2 373 299 17 17 chr6 150270707 150270824 -32144418 - L2 LINE L2 -6 3307 3191 44 56 0 0 chr6 150271022 150271094 -32144148 + AT_rich Low_complexity Low_complexity 1 72 0 1923 126 25 0 chr6 150271503 150271788 -32143454 - AluSx SINE Alu -20 292 1 346 284 103 26 chr6 150271791 150271946 -32143296 - MIR SINE MIR 0 262 96 1346 220 48 23 chr6 150271954 150272308 -32142934 - MLT1A1 LTR MaLR 0 365 3 1396 276 25 23 chr6 150273300 150273781 -32141461 + L1ME1 LINE L1 39 520 -5876 * 2837 254 54 38 chr6 150273776 150275463 -32139779 + L1ME1 LINE L1 1017 2693 -3522 5434 68 101 5 chr6 150275487 150276241 -32139001 - LTR12 LTR ERV1 0 826 1 837 228 53 4 chr6 150276317 150276563 -32138679 + L1ME1 LINE L1 5213 5470 -745 883 249 47 76 chr6 150276565 150277009 -32138233 + L1ME1 LINE L1 5807 6231 -4 198 118 0 0 chr6 150277348 150277382 -32137860 + (TG)n Simple_repeat Simple_repeat 1 34 0 1737 180 0 7 chr6 150278086 150278380 -32136862 - AluJb SINE Alu -14 298 7 21 0 0 0 chr6 150278388 150278409 -32136833 + AT_rich Low_complexity Low_complexity 1 21 0 2051 144 0 0 chr6 150278538 150278843 -32136399 - AluSx SINE Alu -5 307 3 677 276 266 16 chr6 150278864 150279361 -32135881 - L2 LINE L2 -337 2977 2357 2595 225 67 20 chr6 150279361 150279931 -32135311 - L1MB7 LINE L1 -140 6044 5502 1484 133 99 41 chr6 150279931 150280225 -32135017 - AluJb SINE Alu -1 311 1 2595 225 67 20 chr6 150280225 150280970 -32134272 - L1MB7 LINE L1 -682 5502 4672 1266 192 121 46 chr6 150281432 150281755 -32133487 + MER7A DNA MER2_type 2 346 0 200 305 17 0 chr6 150282002 150282061 -32133181 - L3b LINE CR1 -88 1495 1436 23 54 0 0 chr6 150282778 150282815 -32132427 + AT_rich Low_complexity Low_complexity 1 37 0 22 80 0 0 chr6 150283376 150283426 -32131816 + AT_rich Low_complexity Low_complexity 1 50 0 1681 211 22 11 chr6 150284184 150284545 -32130697 - MLT1A1 LTR MaLR 0 365 1 1042 333 53 2 chr6 150285238 150285650 -32129592 + LTR16A LTR ERVL 1 433 -17 604 321 51 27 chr6 150285677 150286010 -32129232 + HERV16 LTR ERVL 11 351 -4645 1073 331 49 31 chr6 150286245 150287225 -32128017 + HERV16 LTR ERVL 896 1957 -3039 1011 299 39 29 chr6 150288362 150288747 -32126495 + LTR16A LTR ERVL 61 449 -1 233 284 85 57 chr6 150288858 150288999 -32126243 - L2 LINE L2 -9 3304 3160 22 70 0 0 chr6 150290652 150290695 -32124547 + AT_rich Low_complexity Low_complexity 1 43 0 2170 117 0 13 chr6 150290880 150291188 -32124054 + AluSg SINE Alu 1 304 -6 32 0 0 0 chr6 150291246 150291278 -32123964 + AT_rich Low_complexity Low_complexity 1 32 0 555 202 10 0 chr6 150291281 150291380 -32123862 - FLAM_A SINE Alu -22 120 21 533 120 0 0 chr6 150291377 150291452 -32123790 + AluSg/x SINE Alu 217 291 -21 * 26 0 0 0 chr6 150291785 150291811 -32123431 + AT_rich Low_complexity Low_complexity 1 26 0 2203 118 10 70 chr6 150292365 150292625 -32122617 - THE1C LTR MaLR 0 375 146 2196 95 6 28 chr6 150292625 150292942 -32122300 + AluSg SINE Alu 1 310 0 2203 118 10 70 chr6 150292942 150293080 -32122162 - THE1C LTR MaLR -229 146 1 831 163 7 0 chr6 150293315 150293456 -32121786 + FLAM_C SINE Alu 1 142 -1 468 340 37 0 chr6 150293952 150294114 -32121128 - MIR SINE MIR -1 261 94 28 29 0 0 chr6 150295624 150295659 -32119583 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr6 150295909 150295945 -32119297 + AT_rich Low_complexity Low_complexity 1 36 0 692 259 58 10 chr6 150297729 150297934 -32117308 - MER58C DNA MER1_type 0 215 1 5493 151 21 17 chr6 150298271 150299400 -32115842 - L1MA4 LINE L1 0 6300 5160 341 251 96 36 chr6 150299816 150299983 -32115259 - L1ME4a LINE L1 -4 6117 5941 523 284 66 71 chr6 150300036 150300402 -32114840 - L1ME4a LINE L1 -169 5952 5589 395 130 0 39 chr6 150300794 150300871 -32114371 - AluJ/FRAM SINE Alu 0 302 229 237 132 0 0 chr6 150301114 150301152 -32114090 + (TA)n Simple_repeat Simple_repeat 1 38 0 1419 161 137 8 chr6 150301162 150301417 -32113825 - AluSx SINE Alu -24 288 1 25 0 0 0 chr6 150301427 150301452 -32113790 + AT_rich Low_complexity Low_complexity 1 25 0 1264 192 26 0 chr6 150301525 150301754 -32113488 + MER61C LTR ERV1 38 272 -162 5392 181 89 112 chr6 150301760 150303459 -32111783 - pTR5 LTR ERV1 0 2438 779 832 169 103 82 chr6 150303459 150303654 -32111588 + MER61D LTR ERV1 236 501 0 1334 284 87 49 chr6 150303656 150304857 -32110385 - L1MC4 LINE L1 -2 8040 6794 412 121 32 8 chr6 150304907 150305031 -32110211 + (TA)n Simple_repeat Simple_repeat 1 127 0 245 330 67 25 chr6 150305034 150305273 -32109969 - L1MC4a LINE L1 -1193 6615 6367 745 149 82 16 chr6 150305572 150305766 -32109476 - L1MA8 LINE L1 -3 6288 6082 998 91 35 21 chr6 150305780 150305923 -32109319 - AluSx SINE Alu -135 177 33 2822 151 13 17 chr6 150305924 150306447 -32108795 - L1MA8 LINE L1 -143 6148 5628 867 286 65 43 chr6 150306445 150306984 -32108258 - L1ME1 LINE L1 -58 6108 5558 * 642 291 44 0 chr6 150306993 150307151 -32108091 - MER45A DNA AcHobo -13 165 1 552 258 93 28 chr6 150307151 150307442 -32107800 - L1ME1 LINE L1 -599 5565 5256 2088 134 6 10 chr6 150307506 150308291 -32106951 - L1PA16 LINE L1 -2 6164 5263 1177 247 95 42 chr6 150308410 150308821 -32106421 - L1ME1 LINE L1 -1237 4909 4521 2215 86 33 20 chr6 150308821 150309124 -32106118 + AluY SINE Alu 1 307 -4 1177 247 95 42 chr6 150309124 150309484 -32105758 - L1ME1 LINE L1 -1625 4521 4097 466 211 77 0 chr6 150309778 150309882 -32105360 - MER58C DNA MER1_type 0 215 104 311 252 39 10 chr6 150309908 150310011 -32105231 - MER58C DNA MER1_type -99 116 11 278 277 0 0 chr6 150310047 150310112 -32105130 + HERV16 LTR ERVL 327 391 -4605 1507 286 65 5 chr6 150310112 150310669 -32104573 - MLT1G LTR MaLR 0 590 1 373 287 45 19 chr6 150311834 150311991 -32103251 - MLT1G-int LTR MaLR -890 481 321 713 280 199 47 chr6 150312111 150312589 -32102653 - MLT1G LTR MaLR 0 530 33 1596 197 11 0 chr6 150312600 150312884 -32102358 - AluJo SINE Alu -23 289 3 260 231 0 0 chr6 150312912 150312964 -32102278 + HERV16 LTR ERVL 385 436 -4560 1351 310 74 15 chr6 150313212 150313819 -32101423 + HERV16 LTR ERVL 701 1343 -3653 2699 315 72 32 chr6 150313869 150315574 -32099668 + HERV16 LTR ERVL 1427 3306 -1905 292 385 70 19 chr6 150315735 150316106 -32099136 + HERV16 LTR ERVL 4509 4898 -756 904 326 66 21 chr6 150316227 150316741 -32098501 + HERV16 LTR ERVL 2576 3148 -1926 332 226 70 91 chr6 150317001 150317244 -32097998 + L1MC5 LINE L1 7005 7242 -719 306 207 45 117 chr6 150317348 150317417 -32097825 + L1MC5 LINE L1 7272 7344 -617 2004 120 4 0 chr6 150317417 150317692 -32097550 + AluSp SINE Alu 1 276 -37 306 207 45 117 chr6 150317692 150317704 -32097538 + L1MC5 LINE L1 7344 7355 -606 210 37 0 0 chr6 150317704 150317731 -32097511 + (TAA)n Simple_repeat Simple_repeat 2 28 0 306 207 45 117 chr6 150317731 150317827 -32097415 + L1MC5 LINE L1 7355 7437 -524 330 215 0 0 chr6 150317864 150317943 -32097299 + (CA)n Simple_repeat Simple_repeat 2 80 0 284 287 88 18 chr6 150318038 150318366 -32096876 + L1MC5 LINE L1 7581 7931 -30 24 53 0 0 chr6 150318414 150318452 -32096790 + AT_rich Low_complexity Low_complexity 1 38 0 557 147 29 10 chr6 150321297 150321399 -32093843 + MER73 LTR ERVL 2 105 -539 2238 239 28 29 chr6 150321493 150321674 -32093568 + L1MC3 LINE L1 7043 7223 -562 315 0 0 0 chr6 150321674 150321709 -32093533 + (TG)n Simple_repeat Simple_repeat 2 36 0 2238 239 28 29 chr6 150321709 150322248 -32092994 + L1MC3 LINE L1 7223 7762 -23 29 0 0 0 chr6 150323247 150323276 -32091966 + AT_rich Low_complexity Low_complexity 1 29 0 872 170 0 0 chr6 150323761 150323908 -32091334 + AluSg/x SINE Alu 127 273 -37 421 352 22 52 chr6 150326332 150326602 -32088640 - L2 LINE L2 -775 2539 2278 282 406 43 22 chr6 150326661 150326939 -32088303 - L2 LINE L2 -1898 1416 1133 2162 140 28 8 chr6 150326953 150327310 -32087932 - THE1B LTR MaLR 0 364 1 254 342 181 25 chr6 150329591 150329790 -32085452 - L3 LINE CR1 -71 1506 1277 1597 143 80 47 chr6 150329820 150330183 -32085059 - THE1C LTR MaLR 0 375 1 1808 109 15 0 chr6 150330183 150330450 -32084792 - THE1C-int LTR MaLR 0 1580 1310 11918 112 33 3 chr6 150330455 150332164 -32083078 - HERVL LTR ERVL -2000 3654 1895 2564 113 8 3 chr6 150332165 150332527 -32082715 + THE1B LTR MaLR 1 364 0 9874 117 26 31 chr6 150332527 150334115 -32081127 + THE1B-int LTR MaLR 1 1580 0 2078 152 16 19 chr6 150334115 150334491 -32080751 + THE1C LTR MaLR 1 375 0 1238 203 22 22 chr6 150334493 150334764 -32080478 + AluJo SINE Alu 22 292 -20 12404 165 15 103 chr6 150334764 150335372 -32079870 - L1PA15-16 LINE L1 -4309 2540 1880 2310 95 3 0 chr6 150335372 150335668 -32079574 + AluSp SINE Alu 1 297 -16 12404 165 15 103 chr6 150335668 150337769 -32077473 - L1PA15-16 LINE L1 -4969 1880 70 394 247 75 14 chr6 150337822 150337968 -32077274 - L1M4 LINE L1 -1886 4260 4106 234 218 0 0 chr6 150338045 150338100 -32077142 - L1MC4 LINE L1 -781 7261 7207 262 221 15 30 chr6 150338157 150338288 -32076954 + (TTATA)n Simple_repeat Simple_repeat 1 129 0 619 255 97 24 chr6 150338340 150338587 -32076655 + L1MC4a LINE L1 7245 7509 -299 5484 140 71 50 chr6 150338662 150340619 -32074623 + L1PA8A LINE L1 1 2262 -4600 12760 200 18 28 chr6 150340627 150341916 -32073326 + L1PA8A LINE L1 2910 4209 -2638 2454 117 0 11 chr6 150341916 150342275 -32072967 + THE1A LTR MaLR 1 355 0 11150 104 10 1 chr6 150342275 150343840 -32071402 + THE1A-int LTR MaLR 1 1580 0 2377 125 11 0 chr6 150343840 150344191 -32071051 + THE1A LTR MaLR 1 355 0 12760 200 18 28 chr6 150344191 150346424 -32068818 + L1PA8A LINE L1 4206 6454 -393 671 77 0 19 chr6 150346439 150346525 -32068717 + AluSg/x SINE Alu 209 294 -18 2808 117 12 0 chr6 150346525 150346945 -32068297 + L1PB1 LINE L1 5724 6148 -3 671 77 0 19 chr6 150346945 150346962 -32068280 + AluSg/x SINE Alu 294 310 -2 21 0 0 0 chr6 150347070 150347091 -32068151 + AT_rich Low_complexity Low_complexity 1 21 0 201 254 16 0 chr6 150347188 150347251 -32067991 + CT-rich Low_complexity Low_complexity 1 64 0 240 366 73 30 chr6 150349953 150350117 -32065125 + L2 LINE L2 3009 3179 -93 248 294 24 24 chr6 150350181 150350266 -32064976 + L2 LINE L2 2685 2769 -545 239 237 149 21 chr6 150350304 150350498 -32064744 - L1MEc LINE L1 -4081 2315 2097 24 32 0 0 chr6 150350775 150350806 -32064436 + AT_rich Low_complexity Low_complexity 1 31 0 310 314 6 30 chr6 150351325 150351494 -32063748 - L1M4 LINE L1 -1451 4695 4531 391 274 18 6 chr6 150351638 150351802 -32063440 + (TA)n Simple_repeat Simple_repeat 1 166 0 1696 174 8 110 chr6 150351802 150352176 -32063066 - Tigger3(Golem) DNA MER2_type -5 3024 9 324 294 132 32 chr6 150352185 150352916 -32062326 - L1M4 LINE L1 -2473 3673 2852 4743 220 35 26 chr6 150353230 150353714 -32061528 - L1MC1 LINE L1 -28 6305 5827 2308 165 63 11 chr6 150353714 150354175 -32061067 + MER31A LTR ERV1 1 485 0 4743 220 35 26 chr6 150354175 150355625 -32059617 - L1MC1 LINE L1 -506 5827 4346 739 151 82 19 chr6 150355653 150355812 -32059430 + MLT1B LTR MaLR 54 222 -168 23 110 0 0 chr6 150355861 150355961 -32059281 + AT_rich Low_complexity Low_complexity 1 100 0 24 32 0 0 chr6 150356548 150356579 -32058663 + AT_rich Low_complexity Low_complexity 1 31 0 418 278 104 26 chr6 150356604 150356834 -32058408 - L1MC4a LINE L1 -1979 5829 5582 196 364 85 17 chr6 150356926 150357044 -32058198 + L2 LINE L2 3147 3272 0 533 213 44 44 chr6 150357436 150357548 -32057694 + AluJo SINE Alu 1 115 -197 2134 123 118 18 chr6 150357548 150357913 -32057329 + MSTA LTR MaLR 1 409 -19 3273 198 20 78 chr6 150357913 150358941 -32056301 - LTR5 LTR ERVK 0 969 1 2134 123 118 18 chr6 150358941 150358964 -32056278 + MSTA LTR MaLR 409 428 0 533 213 44 44 chr6 150358964 150358987 -32056255 + AluJo SINE Alu 114 136 -176 773 228 0 0 chr6 150358998 150359156 -32056086 + AluJo SINE Alu 141 298 -4 2097 139 48 20 chr6 150359381 150359542 -32055700 + THE1B LTR MaLR 3 158 -206 3020 53 0 0 chr6 150359542 150359920 -32055322 - L1PA5 LINE L1 -4 6150 5773 2097 139 48 20 chr6 150359920 150360110 -32055132 + THE1B LTR MaLR 158 364 0 11200 103 13 5 chr6 150360111 150361678 -32053564 + THE1B-int LTR MaLR 2 1580 0 2081 138 51 28 chr6 150361678 150362034 -32053208 + THE1B LTR MaLR 1 364 0 2181 213 26 12 chr6 150362541 150363019 -32052223 + MLT1A1-int LTR MaLR 900 1735 0 1705 208 48 13 chr6 150363019 150363377 -32051865 + MLT1A1 LTR MaLR 1 365 0 227 278 244 0 chr6 150363426 150363516 -32051726 - MIR SINE MIR -136 126 15 614 244 62 6 chr6 150364080 150364256 -32050986 + MLT1L LTR MaLR 426 611 -4 22 35 0 0 chr6 150364522 150364551 -32050691 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr6 150365628 150365660 -32049582 + AT_rich Low_complexity Low_complexity 1 32 0 6364 96 13 2 chr6 150365790 150366800 -32048442 + L1PA11 LINE L1 5156 6173 -1 311 96 19 0 chr6 150367121 150367173 -32048069 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 186 68 51 chr6 150367639 150367698 -32047544 + L2 LINE L2 2440 2499 -815 270 56 0 0 chr6 150368192 150368228 -32047014 + (TG)n Simple_repeat Simple_repeat 2 37 0 280 283 106 9 chr6 150368844 150368957 -32046285 - MIR SINE MIR -10 252 129 1900 241 92 27 chr6 150369223 150369747 -32045495 - MLT1F1 LTR MaLR -9 558 1 331 37 19 56 chr6 150370731 150370785 -32044457 + LTR14A LTR ERVK 1 52 -292 691 160 7 62 chr6 150370901 150371045 -32044197 + AluJo SINE Alu 1 136 -176 223 186 39 49 chr6 150371059 150371161 -32044081 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 22 0 0 0 chr6 150374011 150374033 -32041209 + AT_rich Low_complexity Low_complexity 1 22 0 37 23 0 0 chr6 150374531 150374575 -32040667 + AT_rich Low_complexity Low_complexity 1 44 0 1513 141 4 52 chr6 150375501 150375771 -32039471 - Tigger2 DNA MER2_type -2001 717 461 5111 174 33 14 chr6 150375797 150376155 -32039087 - L1PB2 LINE L1 -2 6149 5799 216 0 0 0 chr6 150376155 150376179 -32039063 + (TG)n Simple_repeat Simple_repeat 2 25 0 5111 174 33 14 chr6 150376179 150377780 -32037462 - L1PB2 LINE L1 -352 5799 4154 398 191 36 73 chr6 150377803 150377913 -32037329 - LTR38B LTR ERV1 -497 113 8 4422 154 48 66 chr6 150378018 150378694 -32036548 + Tigger2 DNA MER2_type 1827 2483 -235 1846 157 3 3 chr6 150378694 150378981 -32036261 + AluSx SINE Alu 1 287 -25 4422 154 48 66 chr6 150378981 150379207 -32036035 + Tigger2 DNA MER2_type 2483 2712 -6 2114 229 40 7 chr6 150379791 150380362 -32034880 - L1MD3 LINE L1 -2 7993 7404 328 256 47 0 chr6 150380362 150380448 -32034794 - MLT1F1 LTR MaLR -442 125 36 381 154 32 56 chr6 150380509 150380635 -32034607 - L1MD3 LINE L1 -705 7099 6915 24 53 0 0 chr6 150380995 150381033 -32034209 + AT_rich Low_complexity Low_complexity 1 38 0 3997 104 39 27 chr6 150381296 150381857 -32033385 - LTR9B LTR ERV1 0 644 73 2792 6 0 10 chr6 150381857 150382171 -32033071 + AluYa5 SINE Alu 1 311 0 3997 104 39 27 chr6 150382171 150382245 -32032997 - LTR9B LTR ERV1 -571 73 1 13000 109 17 26 chr6 150382246 150384167 -32031075 - HUERS-P3b LTR ERV1 -7 7411 5509 1292 94 90 0 chr6 150384167 150384368 -32030874 - LTR9B LTR ERV1 -425 219 1 420 276 126 35 chr6 150384772 150385058 -32030184 + L1ME2 LINE L1 4883 5194 -952 1987 128 3 10 chr6 150385067 150385400 -32029842 + AluSx SINE Alu 3 312 0 735 163 14 21 chr6 150385407 150385548 -32029694 + FLAM_C SINE Alu 1 140 -3 394 255 96 15 chr6 150385560 150385760 -32029482 + L1ME2 LINE L1 5217 5429 -743 2873 130 60 0 chr6 150385796 150386266 -32028976 - MER75 DNA T2_type -16 498 1 1934 228 80 49 chr6 150386273 150386952 -32028290 + L1ME2 LINE L1 5443 6142 -22 1687 160 147 14 chr6 150387261 150387644 -32027598 + Tigger2 DNA MER2_type 1 2718 0 247 339 23 45 chr6 150388581 150388758 -32026484 + L2 LINE L2 2836 3008 -264 557 305 67 61 chr6 150390671 150391015 -32024227 + LTR16A LTR ERVL 57 402 -48 1975 138 3 3 chr6 150391053 150391342 -32023900 + AluSx SINE Alu 3 291 -21 213 363 167 0 chr6 150392358 150392460 -32022782 - L2 LINE L2 -4 3268 3150 211 326 0 70 chr6 150393335 150393421 -32021821 + L2 LINE L2 3192 3271 -1 265 257 0 0 chr6 150393515 150393589 -32021653 + L1ME LINE L1 5521 5594 -527 287 311 0 0 chr6 150393948 150394051 -32021191 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 2190 150 55 2 chr6 150394166 150394566 -32020676 + MSTA LTR MaLR 1 421 -7 369 0 0 0 chr6 150394566 150394607 -32020635 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr6 150394684 150394707 -32020535 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr6 150394975 150395021 -32020221 + AT_rich Low_complexity Low_complexity 1 46 0 216 337 51 10 chr6 150395127 150395225 -32020017 + MIR SINE MIR 31 132 -130 23 33 0 0 chr6 150395997 150396027 -32019215 + AT_rich Low_complexity Low_complexity 1 30 0 1647 189 22 134 chr6 150397533 150398156 -32017086 - MLT2B3 LTR ERVL 0 508 6 1444 231 116 42 chr6 150398371 150398967 -32016275 - LTR48B LTR ERV1 -2 642 3 391 228 0 22 chr6 150399087 150399179 -32016063 + MER21B LTR ERV1 1 90 -773 1939 264 47 39 chr6 150399329 150399697 -32015545 + MER21B LTR ERV1 98 476 -387 2256 119 0 0 chr6 150399697 150399992 -32015250 + AluSq SINE Alu 1 295 -18 1939 264 47 39 chr6 150399992 150400298 -32014944 + MER21B LTR ERV1 476 778 -85 326 189 0 0 chr6 150400328 150400381 -32014861 + L2 LINE L2 3190 3242 -71 4296 162 18 1 chr6 150400704 150401414 -32013828 - MER72 LTR ERV1 0 722 1 1814 166 27 14 chr6 150401781 150402077 -32013165 + AluSx SINE Alu 1 300 -12 212 281 0 0 chr6 150402162 150402219 -32013023 + (TA)n Simple_repeat Simple_repeat 2 58 0 1850 165 0 38 chr6 150402220 150402536 -32012706 - AluJb SINE Alu -8 304 1 1690 218 36 69 chr6 150402590 150403183 -32012059 - MLT2B3 LTR ERVL 0 520 8 200 35 35 0 chr6 150404320 150404349 -32010893 + (CAA)n Simple_repeat Simple_repeat 2 31 0 325 115 213 0 chr6 150404662 150404723 -32010519 + MER39B LTR ERV1 1 74 -579 * 1477 174 67 25 chr6 150404721 150404759 -32010483 + MER39 LTR ERV1 379 414 -293 3864 187 33 46 chr6 150404759 150405674 -32009568 + MER4D LTR ERV1 1 903 0 1477 174 67 25 chr6 150405674 150405951 -32009291 + MER39 LTR ERV1 414 707 0 340 261 123 35 chr6 150406044 150406247 -32008995 + L1ME3A LINE L1 5945 6165 -5 43 71 0 0 chr6 150406619 150406704 -32008538 + AT_rich Low_complexity Low_complexity 1 85 0 1420 216 50 7 chr6 150406908 150407186 -32008056 - AluJo SINE Alu -22 290 1 657 159 0 41 chr6 150407351 150407398 -32007844 - L1MA9 LINE L1 -6 6306 6259 2265 108 0 0 chr6 150407398 150407686 -32007556 + AluSc SINE Alu 1 288 -21 216 0 0 0 chr6 150407686 150407710 -32007532 + (TA)n Simple_repeat Simple_repeat 2 25 0 657 159 0 41 chr6 150407710 150407806 -32007436 - L1MA9 LINE L1 -51 6261 6168 2468 142 21 30 chr6 150407807 150408273 -32006969 - LTR29 LTR ERV1 -1 621 160 301 302 0 0 chr6 150408301 150408397 -32006845 - MER34 LTR ERV1 -446 96 1 1508 118 12 103 chr6 150408413 150408742 -32006500 - L1MA9 LINE L1 -153 6159 5861 3574 154 32 0 chr6 150408744 150409328 -32005914 + LTR26 LTR ERV1 1 603 0 225 0 0 0 chr6 150409930 150409955 -32005287 + (T)n Simple_repeat Simple_repeat 1 25 0 537 367 93 11 chr6 150412152 150412593 -32002649 - L3 LINE CR1 -29 1548 1072 1299 203 104 25 chr6 150413000 150413394 -32001848 - MER119 DNA MER1_type -1 582 158 2378 160 225 98 chr6 150413671 150414863 -32000379 + pTR5 LTR ERV1 606 2433 -5 29 0 0 0 chr6 150415672 150415701 -31999541 + AT_rich Low_complexity Low_complexity 1 29 0 1296 226 110 85 chr6 150416569 150417296 -31997946 - LTR1B LTR ERV1 -81 745 1 255 289 158 26 chr6 150417893 150418045 -31997197 + MIR SINE MIR 69 240 -22 731 285 14 14 chr6 150418143 150418364 -31996878 + MER58A DNA MER1_type 1 221 -3 224 323 0 21 chr6 150418772 150418865 -31996377 + GA-rich Low_complexity Low_complexity 2 92 0 416 368 45 9 chr6 150419281 150419501 -31995741 + MIR SINE MIR 26 253 -9 807 240 41 24 chr6 150420637 150420929 -31994313 + pTR5 LTR ERV1 732 1028 -1410 4635 112 64 70 chr6 150421008 150421506 -31993736 + pTR5 LTR ERV1 278 777 -1829 2583 51 0 3 chr6 150421506 150421818 -31993424 - AluY SINE Alu 0 311 1 4635 112 64 70 chr6 150421818 150422368 -31992874 + pTR5 LTR ERV1 777 2606 0 * 27959 92 5 4 chr6 150422368 150426315 -31988927 + HERV9 LTR ERV1 40 3992 -4407 7793 113 25 8 chr6 150426415 150427632 -31987610 + HERV9 LTR ERV1 3708 4944 -3455 564 136 61 58 chr6 150427633 150427927 -31987315 + HERV9 LTR ERV1 840 1134 -5762 7077 40 0 0 chr6 150427927 150428776 -31986466 + L1PA3 LINE L1 5307 6155 0 373 129 0 0 chr6 150428777 150428839 -31986403 + HERV9 LTR ERV1 7503 7564 -835 * 4274 119 8 11 chr6 150428835 150429735 -31985507 + HERV9 LTR ERV1 504 8399 0 4703 77 18 87 chr6 150429816 150430555 -31984687 + LTR12 LTR ERV1 1 688 0 745 174 32 0 chr6 150431986 150432141 -31983101 - L1MD2 LINE L1 -27 6332 6173 222 37 0 0 chr6 150432235 150432262 -31982980 + (TG)n Simple_repeat Simple_repeat 2 28 0 435 250 9 0 chr6 150432262 150432370 -31982872 - L1MD2 LINE L1 -223 6136 6028 947 238 131 73 chr6 150432583 150433417 -31981825 - L1ME2 LINE L1 -12 6152 5265 475 242 16 16 chr6 150433448 150433630 -31981612 + L1MEc LINE L1 1847 2028 -4368 353 258 33 50 chr6 150433625 150433807 -31981435 + L1ME1 LINE L1 5894 6075 -103 * 510 292 173 12 chr6 150433843 150434172 -31981070 + MLT1I LTR MaLR 4 385 -24 632 219 0 0 chr6 150434268 150434396 -31980846 - MLT1C LTR MaLR 0 467 340 977 154 0 11 chr6 150434407 150434589 -31980653 + CT-rich Low_complexity Low_complexity 1 180 0 2080 115 3 32 chr6 150434597 150434909 -31980333 - AluSp SINE Alu -9 304 2 7259 167 20 12 chr6 150434930 150436371 -31978871 - L1MA1 LINE L1 -6 7715 6246 2225 107 0 7 chr6 150436371 150436670 -31978572 - AluY SINE Alu -9 302 6 7259 167 20 12 chr6 150436670 150437845 -31977397 - L1MA1 LINE L1 -1475 6246 5081 5038 118 22 0 chr6 150437841 150438606 -31976636 - THE1B-int LTR MaLR -798 782 1 * 1723 171 55 50 chr6 150438606 150438680 -31976562 - THE1B LTR MaLR 0 364 292 1870 151 0 0 chr6 150438680 150438958 -31976284 + AluSg SINE Alu 33 310 0 1723 171 55 50 chr6 150438958 150439245 -31975997 - THE1B LTR MaLR -72 292 1 16260 167 55 30 chr6 150439247 150442392 -31972850 - L1MA1 LINE L1 -3626 3939 873 2259 130 0 0 chr6 150442392 150442699 -31972543 - AluSx SINE Alu -5 307 1 16260 167 55 30 chr6 150442699 150443337 -31971905 - L1MA1 LINE L1 -6692 873 52 2264 112 0 0 chr6 150443337 150443640 -31971602 - AluSx SINE Alu -9 303 1 16260 167 55 30 chr6 150443640 150443674 -31971568 - L1MA1 LINE L1 -7513 52 20 1672 195 53 15 chr6 150443676 150444015 -31971227 - MLT1C LTR MaLR -115 352 1 1817 139 14 3 chr6 150446396 150446684 -31968558 + AluSx SINE Alu 1 291 -21 28 102 0 0 chr6 150446856 150446954 -31968288 + AT_rich Low_complexity Low_complexity 1 98 0 21 36 0 0 chr6 150447091 150447119 -31968123 + AT_rich Low_complexity Low_complexity 1 28 0 345 162 0 0 chr6 150447139 150447207 -31968035 + (TA)n Simple_repeat Simple_repeat 2 69 0 529 223 167 34 chr6 150447310 150447579 -31967663 - Charlie1 DNA MER1_type 0 2761 2457 1074 240 76 35 chr6 150448326 150448722 -31966520 - LTR16A1 LTR ERVL -38 419 8 1303 237 87 8 chr6 150449051 150449444 -31965798 + L1MD3 LINE L1 6854 7277 -718 407 227 25 50 chr6 150449447 150449566 -31965676 + MLT1F1 LTR MaLR 3 118 -449 2178 222 55 31 chr6 150449568 150450149 -31965093 + L1MD3 LINE L1 7401 7995 0 311 288 0 0 chr6 150450426 150450499 -31964743 - HERV16 LTR ERVL -850 4804 4732 674 393 9 14 chr6 150450810 150451245 -31963997 - HERV16 LTR ERVL -1338 4316 3884 285 226 21 43 chr6 150451256 150451349 -31963893 + LTR41 LTR ERVL 6 96 -677 6960 29 0 0 chr6 150451349 150452274 -31962968 - L1P1 LINE L1 -679 5476 4552 2433 50 3 0 chr6 150452274 150452595 -31962647 + L1PA3 LINE L1 5839 6170 0 717 272 104 70 chr6 150452616 150453249 -31961993 + LTR41 LTR ERVL 82 736 -37 267 331 73 7 chr6 150453370 150453506 -31961736 - HERV16 LTR ERVL -1481 3515 3371 361 338 53 10 chr6 150453934 150454141 -31961101 - HERV16 LTR ERVL -2277 3208 2993 189 0 0 0 chr6 150454171 150454192 -31961050 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 538 341 43 19 chr6 150454227 150454498 -31960744 - HERV16 LTR ERVL -2088 2912 2658 271 305 12 0 chr6 150454711 150454793 -31960449 - HERV16 LTR ERVL -2623 2373 2291 807 315 87 21 chr6 150454968 150455346 -31959896 - HERV16 LTR ERVL -2917 2079 1677 391 284 0 0 chr6 150455346 150455441 -31959801 - HERV16 LTR ERVL -2313 3341 3247 618 329 56 70 chr6 150455479 150455833 -31959409 - HERV16 LTR ERVL -4291 705 365 2098 117 3 0 chr6 150455833 150456156 -31959086 + AluSp SINE Alu 1 313 0 618 329 56 70 chr6 150456156 150456516 -31958726 - HERV16 LTR ERVL -4631 365 1 417 200 70 43 chr6 150456516 150456631 -31958611 - LTR16A1 LTR ERVL 0 457 340 * 797 132 0 0 chr6 150456618 150456739 -31958503 + MLT2B1 LTR ERVL 400 520 0 360 228 130 118 chr6 150456739 150456934 -31958308 - LTR16A1 LTR ERVL -115 342 140 869 148 26 26 chr6 150456934 150457123 -31958119 - MER53 DNA DNA 0 189 1 360 228 130 118 chr6 150457123 150457265 -31957977 - LTR16A1 LTR ERVL -317 140 1 529 318 90 16 chr6 150457996 150458307 -31956935 - LTR16C LTR ERVL -19 472 139 1855 157 20 23 chr6 150458327 150458671 -31956571 - MER61A LTR ERV1 0 343 1 24 0 0 0 chr6 150459980 150460004 -31955238 + AT_rich Low_complexity Low_complexity 1 24 0 660 333 122 23 chr6 150460526 150460871 -31954371 - L3 LINE CR1 -12 1565 1187 213 400 27 9 chr6 150461229 150461339 -31953903 - L3 LINE CR1 -784 793 682 23 33 0 0 chr6 150461589 150461619 -31953623 + AT_rich Low_complexity Low_complexity 1 30 0 460 159 0 0 chr6 150462140 150462209 -31953033 + Tigger2 DNA MER2_type 1 69 -2649 * 2180 201 20 11 chr6 150462193 150462641 -31952601 + Tigger2 DNA MER2_type 2267 2718 0 10167 183 36 42 chr6 150463278 150463689 -31951553 + L1MD2 LINE L1 22 434 -5950 879 273 77 20 chr6 150463689 150464198 -31951044 - MER34 LTR ERV1 0 542 5 10167 183 36 42 chr6 150464198 150466113 -31949129 + L1MD2 LINE L1 434 2333 -4051 2268 217 42 30 chr6 150466115 150466225 -31949017 + L1MD2 LINE L1 3783 3890 -2492 1464 190 49 38 chr6 150466225 150466594 -31948648 - THE1C LTR MaLR 0 375 3 8546 159 21 36 chr6 150466596 150468198 -31947044 - THE1C-int LTR MaLR 0 1580 3 1748 169 52 27 chr6 150468199 150468565 -31946677 - THE1C LTR MaLR 0 375 1 2268 217 42 30 chr6 150468565 150469112 -31946130 + L1MD2 LINE L1 3889 4453 -1929 * 3602 194 70 12 chr6 150469110 150469944 -31945298 + L1MB3 LINE L1 5212 6104 -79 1285 40 0 0 chr6 150469944 150470094 -31945148 + AluSc SINE Alu 36 185 -124 444 176 0 0 chr6 150470099 150470184 -31945058 + L1MB4 LINE L1 6094 6178 -2 606 310 56 19 chr6 150471623 150472156 -31943086 + L1M4 LINE L1 2911 3463 -2683 2252 131 5 32 chr6 150472225 150472599 -31942643 - THE1B LTR MaLR 0 364 1 2104 163 13 20 chr6 150472641 150473034 -31942208 - MLT1B LTR MaLR 0 390 1 809 306 85 22 chr6 150473047 150473902 -31941340 + L1M4 LINE L1 3666 4574 -1572 2600 237 91 64 chr6 150474190 150475842 -31939400 - L1MDa LINE L1 -3651 2889 1163 2135 253 26 22 chr6 150475824 150476580 -31938662 + L1MD2 LINE L1 4642 5400 -982 * 1172 153 80 20 chr6 150476583 150476716 -31938526 + L1MA9 LINE L1 6044 6168 -144 2143 71 46 0 chr6 150476716 150476997 -31938245 - AluY SINE Alu -17 294 1 1172 153 80 20 chr6 150476997 150477112 -31938130 + L1MA9 LINE L1 6168 6307 -5 3668 230 77 16 chr6 150477122 150478292 -31936950 + L1MD2 LINE L1 5365 6594 -1 284 299 64 13 chr6 150478692 150478849 -31936393 + L1MC5 LINE L1 7292 7456 -505 1266 200 65 11 chr6 150479044 150479319 -31935923 - AluJo SINE Alu -20 292 3 351 44 0 0 chr6 150479777 150479822 -31935420 + (CA)n Simple_repeat Simple_repeat 2 46 0 566 295 57 57 chr6 150479921 150480378 -31934864 - L1ME3A LINE L1 -5 6165 5709 7626 29 0 0 chr6 150481093 150482411 -31932831 + L1PA3 LINE L1 4838 6155 0 21 36 0 0 chr6 150482664 150482692 -31932550 + AT_rich Low_complexity Low_complexity 1 28 0 301 274 53 35 chr6 150483983 150484096 -31931146 + L1ME4a LINE L1 5759 5873 -248 22 56 0 0 chr6 150484237 150484273 -31930969 + AT_rich Low_complexity Low_complexity 1 36 0 302 269 34 17 chr6 150485312 150485431 -31929811 + L1ME4a LINE L1 5969 6089 -32 21 36 0 0 chr6 150485439 150485467 -31929775 + AT_rich Low_complexity Low_complexity 1 28 0 932 51 0 0 chr6 150486062 150486180 -31929062 + L1PA11 LINE L1 5711 5828 -346 22 35 0 0 chr6 150487487 150487516 -31927726 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr6 150487691 150487742 -31927500 + AT_rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr6 150488407 150488434 -31926808 + AT_rich Low_complexity Low_complexity 1 27 0 585 243 62 41 chr6 150488746 150488989 -31926253 - L1ME3A LINE L1 -217 5953 5706 451 312 101 5 chr6 150489296 150489485 -31925757 - MER63A DNA MER1_type -1 209 3 260 308 157 17 chr6 150489495 150489667 -31925575 + MIR SINE MIR 13 208 -54 182 329 73 24 chr6 150490391 150490473 -31924769 - L2 LINE L2 -38 3234 3149 264 235 133 10 chr6 150491046 150491144 -31924098 + L2 LINE L2 3153 3262 -10 272 187 11 44 chr6 150491186 150491277 -31923965 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 2185 154 108 53 chr6 150491321 150491814 -31923428 + MLT2B1 LTR ERVL 1 520 0 548 162 0 18 chr6 150491951 150492062 -31923180 + (CATATA)n Simple_repeat Simple_repeat 3 111 0 1515 203 59 7 chr6 150492062 150492368 -31922874 - MER7A DNA MER2_type -3 343 24 233 299 117 39 chr6 150492532 150492686 -31922556 - L2 LINE L2 -13 3300 3135 26 0 0 0 chr6 150492781 150492807 -31922435 + AT_rich Low_complexity Low_complexity 1 26 0 2434 61 0 0 chr6 150493663 150493956 -31921286 - AluY SINE Alu -18 293 1 2804 251 80 32 chr6 150494075 150495512 -31919730 + L1ME1 LINE L1 3846 5403 -763 228 67 0 0 chr6 150495512 150495542 -31919700 + (CA)n Simple_repeat Simple_repeat 1 30 0 2804 251 80 32 chr6 150495542 150496031 -31919211 + L1ME1 LINE L1 5403 5867 -299 696 167 0 40 chr6 150496135 150496261 -31918981 - AluSg/x SINE Alu -22 290 170 204 191 29 73 chr6 150496687 150496755 -31918487 + MIR SINE MIR 192 256 -6 21 0 0 0 chr6 150496949 150496970 -31918272 + AT_rich Low_complexity Low_complexity 1 21 0 2195 117 0 0 chr6 150497025 150497325 -31917917 - AluY SINE Alu -11 300 1 306 375 40 0 chr6 150497357 150497509 -31917733 - MIR SINE MIR -89 173 16 1679 222 43 108 chr6 150499037 150499619 -31915623 + MLT2B3 LTR ERVL 1 544 -10 4346 279 66 25 chr6 150499880 150501770 -31913472 + L1MB8 LINE L1 3 1970 -4885 * 5951 261 42 50 chr6 150501745 150503574 -31911668 + L1MB8 LINE L1 2446 4287 -2670 1989 138 0 0 chr6 150503574 150503891 -31911351 + AluSx SINE Alu 1 317 0 5951 261 42 50 chr6 150503891 150504826 -31910416 + L1MB8 LINE L1 4287 5171 -1786 2134 144 17 0 chr6 150504826 150505172 -31910070 + L1PB3 LINE L1 5796 6147 -7 5951 261 42 50 chr6 150505172 150505414 -31909828 + L1MB8 LINE L1 5171 5413 -1544 2441 204 110 82 chr6 150505422 150506840 -31908402 + MER52A LTR ERV1 18 1197 -558 338 175 0 0 chr6 150506840 150506903 -31908339 + MER52A LTR ERV1 1693 1755 0 3454 222 37 27 chr6 150506920 150508379 -31906863 + L1MB8 LINE L1 5423 6890 -99 646 207 12 18 chr6 150508413 150508577 -31906665 + L1MB8 LINE L1 6007 6169 -9 24 0 0 0 chr6 150510329 150510353 -31904889 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr6 150510929 150510979 -31904263 + AT_rich Low_complexity Low_complexity 1 50 0 384 305 39 0 chr6 150512232 150512360 -31902882 + L1ME LINE L1 5562 5694 -472 591 233 62 11 chr6 150512360 150512536 -31902706 + LTR1 LTR ERV1 1 185 -600 348 270 0 0 chr6 150512705 150512794 -31902448 - L2 LINE L2 0 3272 3184 252 240 0 67 chr6 150512987 150513062 -31902180 - L1ME4a LINE L1 -64 6057 5988 320 216 35 35 chr6 150513140 150513256 -31901986 + L1MC4 LINE L1 7923 8038 -4 3444 261 83 64 chr6 150513290 150515909 -31899333 - L1MEc LINE L1 -1430 4785 2156 353 331 22 48 chr6 150515950 150516208 -31899034 + LTR16A1 LTR ERVL 1 250 -200 228 323 101 29 chr6 150516498 150516774 -31898468 - L1MEc LINE L1 -4576 1820 1525 470 324 104 65 chr6 150516946 150517541 -31897701 - L1M4 LINE L1 -1928 4218 3601 1341 233 124 15 chr6 150517655 150518114 -31897128 - L1ME1 LINE L1 -4 6162 5654 2102 253 59 3 chr6 150518139 150518779 -31896463 - L1ME1 LINE L1 -1150 4996 4321 525 304 16 37 chr6 150518992 150519235 -31896007 + L1ME1 LINE L1 5851 6088 -78 678 291 74 4 chr6 150519237 150519467 -31895775 + L1ME3A LINE L1 5924 6169 -1 1598 198 42 24 chr6 150519626 150520009 -31895233 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr6 150520166 150520188 -31895054 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 150520323 150520345 -31894897 + AT_rich Low_complexity Low_complexity 1 22 0 3374 157 70 7 chr6 150520503 150521179 -31894063 + Tigger3(Golem) DNA MER2_type 2311 3028 -1 703 223 43 0 chr6 150521180 150521368 -31893874 - MLT1D-int LTR MaLR -1129 242 47 3080 190 53 84 chr6 150521376 150521829 -31893413 - L1MC1 LINE L1 -6 6327 5861 2059 122 31 0 chr6 150521829 150522123 -31893119 + AluSq SINE Alu 1 303 -10 3080 190 53 84 chr6 150522123 150522220 -31893022 - L1MC1 LINE L1 -472 5861 5763 1586 99 13 4 chr6 150522220 150522452 -31892790 + AluSg/x SINE Alu 78 311 -1 3080 190 53 84 chr6 150522452 150523132 -31892110 - L1MC1 LINE L1 -570 5763 5145 751 294 51 0 chr6 150523132 150523346 -31891896 - MLT1D LTR MaLR -4 501 277 1851 194 14 22 chr6 150523379 150523744 -31891498 + MLT2D LTR ERVL 5 366 -48 644 71 36 0 chr6 150523765 150523877 -31891365 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 851 222 63 10 chr6 150523895 150524102 -31891140 - MLT1D LTR MaLR -287 218 1 21 71 0 0 chr6 150524279 150524321 -31890921 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr6 150524476 150524505 -31890737 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 150524527 150524556 -31890686 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 150525323 150525345 -31889897 + AT_rich Low_complexity Low_complexity 1 22 0 37 23 0 0 chr6 150525841 150525885 -31889357 + AT_rich Low_complexity Low_complexity 1 44 0 516 298 37 9 chr6 150527290 150527505 -31887737 + LTR16B LTR ERVL 240 460 -4 234 267 106 17 chr6 150527638 150527818 -31887424 - L1ME4a LINE L1 -4 6117 5922 24 32 0 0 chr6 150527906 150527937 -31887305 + AT_rich Low_complexity Low_complexity 1 31 0 958 183 5 29 chr6 150527977 150528185 -31887057 - L1MA9 LINE L1 0 7272 7070 2758 178 17 6 chr6 150528189 150528965 -31886277 + MER6 DNA MER2_type 5 865 0 2362 187 34 27 chr6 150528965 150529489 -31885753 - L1MA9 LINE L1 -201 7071 6544 207 69 0 0 chr6 150529490 150529519 -31885723 + (TC)n Simple_repeat Simple_repeat 2 30 0 4585 179 21 68 chr6 150529550 150530717 -31884525 - L1MA9 LINE L1 -1538 5568 4456 2653 261 51 62 chr6 150530721 150532091 -31883151 - L1MA9 LINE L1 -3373 3733 2768 1674 157 38 0 chr6 150532091 150532384 -31882858 - AluSx SINE Alu -8 304 1 2653 261 51 62 chr6 150532384 150534163 -31881079 - L1MA9 LINE L1 -4338 2768 971 1188 242 22 15 chr6 150534170 150534443 -31880799 - L1MA9 LINE L1 -6754 276 2 37 0 0 0 chr6 150535631 150535668 -31879574 + AT_rich Low_complexity Low_complexity 1 37 0 359 262 135 8 chr6 150535865 150535991 -31879251 - MIR SINE MIR -70 192 51 27 0 0 0 chr6 150537475 150537502 -31877740 + AT_rich Low_complexity Low_complexity 1 27 0 629 185 8 31 chr6 150537594 150537724 -31877518 - FLAM_A SINE Alu -5 137 11 1639 245 79 70 chr6 150537742 150538319 -31876923 - L1ME1 LINE L1 -3 6163 5575 7996 87 3 1 chr6 150538319 150539388 -31875854 - MER11C LTR ERVK 0 1071 1 1639 245 79 70 chr6 150539388 150539650 -31875592 - L1ME1 LINE L1 -591 5575 5317 4136 170 41 48 chr6 150539667 150540587 -31874655 - L1MB2 LINE L1 -1 6170 5257 2189 162 40 18 chr6 150540602 150541003 -31874239 - MSTB1 LTR MaLR 0 432 23 493 188 16 39 chr6 150541027 150541155 -31874087 - L1MB2 LINE L1 -905 5241 5117 2101 260 50 29 chr6 150541166 150542059 -31873183 - L1ME1 LINE L1 -843 5303 4392 1091 245 158 17 chr6 150542099 150542446 -31872796 - MSTD LTR MaLR 0 396 1 439 231 17 34 chr6 150544741 150544858 -31870384 - MIR SINE MIR -2 260 146 237 315 0 14 chr6 150545965 150546038 -31869204 + T-rich Low_complexity Low_complexity 3 74 0 29 28 0 0 chr6 150547393 150547429 -31867813 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr6 150548030 150548055 -31867187 + AT_rich Low_complexity Low_complexity 1 25 0 949 175 0 6 chr6 150548289 150548455 -31866787 - FRAM SINE Alu 0 176 12 328 284 72 68 chr6 150548978 150549200 -31866042 + MLT1L LTR MaLR 368 590 -25 354 371 68 16 chr6 150549821 150550142 -31865100 - L1ME LINE L1 -327 5794 5457 23 33 0 0 chr6 150550239 150550269 -31864973 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr6 150551157 150551194 -31864048 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr6 150551223 150551267 -31863975 + AT_rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr6 150551449 150551490 -31863752 + AT_rich Low_complexity Low_complexity 1 41 0 312 272 184 0 chr6 150551519 150551655 -31863587 - L1ME3A LINE L1 -281 5889 5729 22 0 0 0 chr6 150551706 150551728 -31863514 + AT_rich Low_complexity Low_complexity 1 22 0 1552 155 40 29 chr6 150552468 150552746 -31862496 + THE1B LTR MaLR 1 281 -83 542 65 13 13 chr6 150552725 150552802 -31862440 - THE1B LTR MaLR -287 77 1 * 22 35 0 0 chr6 150553055 150553084 -31862158 + AT_rich Low_complexity Low_complexity 1 29 0 261 260 10 10 chr6 150553342 150553442 -31861800 + T-rich Low_complexity Low_complexity 4 103 0 660 248 13 42 chr6 150553485 150553723 -31861519 - LTR37B LTR ERV1 0 468 238 3048 197 79 18 chr6 150553731 150554401 -31860841 - MER50 LTR ERV1 -23 711 1 4998 196 98 104 chr6 150554840 150555926 -31859316 + L1MC3 LINE L1 5991 7159 -626 340 232 32 21 chr6 150555926 150556021 -31859221 + MLT1F1 LTR MaLR 35 130 -437 4998 196 98 104 chr6 150556021 150556637 -31858605 + L1MC3 LINE L1 7159 7777 -8 253 171 0 0 chr6 150556933 150556965 -31858277 - MER58A DNA MER1_type -5 219 188 698 255 14 0 chr6 150556965 150557110 -31858132 - MER58A DNA MER1_type 0 148 2 28 0 0 0 chr6 150557424 150557452 -31857790 + AT_rich Low_complexity Low_complexity 1 28 0 36 40 0 0 chr6 150559909 150559959 -31855283 + AT_rich Low_complexity Low_complexity 1 50 0 773 176 0 0 chr6 150559960 150560085 -31855157 - AluJb SINE Alu -187 125 1 21 36 0 0 chr6 150560394 150560422 -31854820 + AT_rich Low_complexity Low_complexity 1 28 0 5229 169 12 7 chr6 150560971 150561887 -31853355 - Tigger1 DNA MER2_type 0 2418 1498 320 119 15 30 chr6 150561887 150561954 -31853288 - MER57A LTR ERV1 -2 401 336 270 261 0 0 chr6 150561945 150562010 -31853232 - Tigger1 DNA MER2_type -2352 66 2 * 738 135 35 0 chr6 150562013 150562154 -31853088 - L1 LINE L1 -1737 4409 4264 4604 180 80 9 chr6 150562166 150563034 -31852208 + L1M1 LINE L1 18 946 -6619 8826 144 15 19 chr6 150563037 150564667 -31850575 + L1M1 LINE L1 2072 3695 -3870 2071 186 44 12 chr6 150564665 150565446 -31849796 + L1M1 LINE L1 6255 7069 -655 * 404 37 19 0 chr6 150565450 150565504 -31849738 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 234 91 0 68 chr6 150565508 150565596 -31849646 + (TA)n Simple_repeat Simple_repeat 2 83 0 1528 248 129 38 chr6 150565597 150566233 -31849009 - L1M3d LINE L1 -4522 1369 676 678 327 52 59 chr6 150566372 150567234 -31848008 - L1M3d LINE L1 -5219 672 30 21 0 0 0 chr6 150568703 150568724 -31846518 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 150569064 150569088 -31846154 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 150569277 150569304 -31845938 + AT_rich Low_complexity Low_complexity 1 27 0 308 310 130 21 chr6 150570008 150570292 -31844950 + L1M4 LINE L1 4028 4342 -1804 401 250 9 0 chr6 150570315 150570431 -31844811 + MER53 DNA DNA 23 139 -50 22 0 0 0 chr6 150570730 150570752 -31844490 + AT_rich Low_complexity Low_complexity 1 22 0 243 215 54 0 chr6 150570954 150571047 -31844195 + (TA)n Simple_repeat Simple_repeat 1 98 0 2849 181 73 65 chr6 150571053 150571734 -31843508 - MER44D DNA MER2_type -6 699 13 1079 232 9 4 chr6 150571828 150572061 -31843181 - MLT1A1 LTR MaLR 0 365 132 354 23 0 0 chr6 150572067 150572110 -31843132 + (CA)n Simple_repeat Simple_repeat 1 43 0 2363 200 22 8 chr6 150572110 150572620 -31842622 + L1MA7 LINE L1 4669 5185 -961 4242 180 14 29 chr6 150572642 150573006 -31842236 + L1MA7 LINE L1 5404 5772 -519 2179 104 7 0 chr6 150573006 150573293 -31841949 + AluSc SINE Alu 1 289 -20 4242 180 14 29 chr6 150573293 150573827 -31841415 + L1MA7 LINE L1 5772 6289 -2 292 278 14 0 chr6 150573837 150573909 -31841333 - MLT1A1 LTR MaLR -221 144 72 443 252 0 27 chr6 150574001 150574112 -31841130 - MLT1A1 LTR MaLR -220 145 38 282 266 16 0 chr6 150574225 150574289 -31840953 - L2 LINE L2 0 3313 3249 397 260 0 0 chr6 150574292 150574392 -31840850 - L1MD3 LINE L1 0 7995 7896 335 250 62 23 chr6 150574789 150574917 -31840325 - L1M4 LINE L1 -2302 3844 3712 23 101 0 0 chr6 150575165 150575244 -31839998 + AT_rich Low_complexity Low_complexity 1 79 0 635 329 75 40 chr6 150575258 150575832 -31839410 - L1M4 LINE L1 -2873 3273 2680 235 336 18 0 chr6 150576356 150576469 -31838773 + L1MC4 LINE L1 6589 6703 -1339 * 254 250 0 22 chr6 150576465 150576557 -31838685 - L1MC4 LINE L1 -1339 6703 6614 250 270 45 0 chr6 150576485 150576574 -31838668 + L1MC4 LINE L1 6614 6706 -1336 * 32 0 0 0 chr6 150576914 150576946 -31838296 + AT_rich Low_complexity Low_complexity 1 32 0 49 52 0 0 chr6 150577149 150577226 -31838016 + AT_rich Low_complexity Low_complexity 1 77 0 518 282 81 29 chr6 150577793 150577967 -31837275 + MER5A DNA MER1_type 7 189 0 26 0 0 0 chr6 150578392 150578418 -31836824 + AT_rich Low_complexity Low_complexity 1 26 0 387 316 59 14 chr6 150578581 150578767 -31836475 + MIR SINE MIR 23 215 -47 217 215 15 62 chr6 150578867 150578932 -31836310 + L2 LINE L2 3234 3295 -18 501 254 182 41 chr6 150579107 150579625 -31835617 - L1ME3A LINE L1 -20 6144 5561 694 267 91 14 chr6 150579802 150580023 -31835219 - MER8 DNA MER2_type 0 239 2 528 303 76 45 chr6 150580756 150581178 -31834064 - L1MEd LINE L1 -5674 445 11 2027 204 58 5 chr6 150581534 150581965 -31833277 - MLT2C2 LTR ERVL -8 456 3 287 196 18 0 chr6 150582185 150582241 -31833001 + MLT1A2 LTR MaLR 1 57 -317 13617 200 35 16 chr6 150582249 150586941 -31828301 + L1MA4 LINE L1 2893 7674 -45 724 194 72 33 chr6 150586937 150587117 -31828125 - L1MC/D LINE L1 -2140 6063 5877 * 6868 256 61 49 chr6 150587125 150590672 -31824570 - L1MCb LINE L1 -971 5593 1722 186 43 0 0 chr6 150590672 150590695 -31824547 + (TTC)n Simple_repeat Simple_repeat 2 24 0 6868 256 61 49 chr6 150590695 150592436 -31822806 - L1MCb LINE L1 -4842 1722 3 571 329 36 13 chr6 150594291 150594516 -31820726 - MIR SINE MIR -13 249 20 21 0 0 0 chr6 150595694 150595715 -31819527 + AT_rich Low_complexity Low_complexity 1 21 0 2463 78 0 0 chr6 150595801 150596107 -31819135 - AluY SINE Alu -5 306 1 288 198 18 18 chr6 150596743 150596854 -31818388 + GA-rich Low_complexity Low_complexity 3 113 0 233 123 0 35 chr6 150596984 150597041 -31818201 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 22 0 0 0 chr6 150597754 150597776 -31817466 + AT_rich Low_complexity Low_complexity 1 22 0 273 119 0 0 chr6 150597945 150597987 -31817255 + (CA)n Simple_repeat Simple_repeat 1 42 0 2502 161 9 4 chr6 150598280 150598762 -31816480 + MER1A DNA MER1_type 4 529 0 2286 139 3 5 chr6 150600662 150601036 -31814206 - L1PB1 LINE L1 -2 6149 5777 268 260 0 0 chr6 150601036 150601109 -31814133 - L1MC4 LINE L1 -1356 6686 6614 389 139 12 124 chr6 150601125 150601534 -31813708 + (TA)n Simple_repeat Simple_repeat 1 363 0 707 130 0 0 chr6 150601556 150601664 -31813578 - L1P5 LINE L1 -370 5781 5674 * 784 234 5 0 chr6 150601656 150601840 -31813402 - L1P5 LINE L1 -894 5252 5068 572 196 0 9 chr6 150601943 150602055 -31813187 - L1PB1 LINE L1 -264 6603 6493 339 255 0 10 chr6 150602024 150602126 -31813116 + L1MC4 LINE L1 6603 6703 -1339 * 346 175 9 67 chr6 150602139 150602492 -31812750 + (TA)n Simple_repeat Simple_repeat 1 332 0 707 130 0 0 chr6 150602514 150602622 -31812620 - L1PB1 LINE L1 -370 6497 6390 * 14101 200 15 4 chr6 150602614 150605926 -31809316 - L1PB1 LINE L1 -894 5968 2619 27 49 0 0 chr6 150606550 150606591 -31808651 + AT_rich Low_complexity Low_complexity 1 41 0 642 334 163 38 chr6 150607421 150608460 -31806782 + L2 LINE L2 1171 2339 -975 249 143 48 0 chr6 150608879 150608921 -31806321 + Alu SINE Alu 244 287 -15 320 75 0 19 chr6 150608923 150608976 -31806266 + (TC)n Simple_repeat Simple_repeat 2 53 0 30 59 0 0 chr6 150608999 150609050 -31806192 + AT_rich Low_complexity Low_complexity 1 51 0 204 40 0 0 chr6 150609366 150609391 -31805851 + (T)n Simple_repeat Simple_repeat 1 25 0 545 82 41 0 chr6 150609779 150609876 -31805366 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 1488 172 65 21 chr6 150609890 150610180 -31805062 - L1MC3 LINE L1 -353 7432 7130 366 279 70 47 chr6 150610185 150610357 -31804885 - L1ME3A LINE L1 -30 6140 5965 4119 200 43 32 chr6 150610474 150611035 -31804207 - L1MC3 LINE L1 -16 7769 7189 1598 87 0 9 chr6 150611035 150611285 -31803957 - AluSg/x SINE Alu 0 312 96 4119 200 43 32 chr6 150611285 150611736 -31803506 - L1MC3 LINE L1 -596 7189 6745 404 196 18 27 chr6 150611737 150611849 -31803393 - L1ME3A LINE L1 -260 5910 5800 341 213 62 0 chr6 150611894 150611974 -31803268 + MER58 DNA MER1_type 181 265 -76 414 335 6 11 chr6 150611984 150612166 -31803076 - L1ME3A LINE L1 -423 5747 5567 192 110 85 12 chr6 150612166 150612188 -31803054 + (TTTA)n Simple_repeat Simple_repeat 1 20 -68 4455 117 28 0 chr6 150612188 150612865 -31802377 - L1PA11 LINE L1 -3 6171 5476 192 110 85 12 chr6 150612865 150612924 -31802318 + (TTTA)n Simple_repeat Simple_repeat 20 88 0 7253 36 16 0 chr6 150612930 150613980 -31801262 - L1PA4 LINE L1 -6 6149 5090 2579 34 3 0 chr6 150613980 150614300 -31800942 + L1P LINE L1 4734 5054 -1092 * 5507 150 37 2 chr6 150614299 150614483 -31800759 - L1PA11 LINE L1 -678 5490 5314 1955 133 17 10 chr6 150614483 150614785 -31800457 - AluSx SINE Alu -6 306 3 5507 150 37 2 chr6 150614785 150615681 -31799561 - L1PA11 LINE L1 -854 5314 4376 318 277 95 15 chr6 150615708 150615845 -31799397 - L1M4 LINE L1 -2202 3944 3797 264 253 51 0 chr6 150616228 150616307 -31798935 - L1MB1 LINE L1 -1 6167 6085 24 67 0 0 chr6 150617245 150617290 -31797952 + AT_rich Low_complexity Low_complexity 1 45 0 561 355 74 40 chr6 150617441 150617968 -31797274 + L2 LINE L2 2430 2974 -340 264 30 0 0 chr6 150618087 150618120 -31797122 + (TC)n Simple_repeat Simple_repeat 2 34 0 182 36 0 36 chr6 150618130 150618158 -31797084 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 242 198 37 0 chr6 150618161 150618242 -31797000 + (TA)n Simple_repeat Simple_repeat 1 84 0 1074 146 0 0 chr6 150618316 150618676 -31796566 + (TA)n Simple_repeat Simple_repeat 1 360 0 370 74 0 0 chr6 150618709 150618763 -31796479 + AluSq/x SINE Alu 80 133 -169 25 31 0 0 chr6 150618763 150618795 -31796447 + AT_rich Low_complexity Low_complexity 1 32 0 1947 176 62 43 chr6 150618892 150619312 -31795930 + MSTC LTR MaLR 1 428 0 204 125 0 0 chr6 150619891 150619923 -31795319 + (TG)n Simple_repeat Simple_repeat 1 32 0 1588 228 3 19 chr6 150619952 150620277 -31794965 + MLT1A1 LTR MaLR 27 346 -19 4168 125 8 42 chr6 150620330 150620519 -31794723 - L1MA3 LINE L1 0 6305 6111 2001 134 0 0 chr6 150620519 150620809 -31794433 - AluSq SINE Alu -23 290 1 4168 125 8 42 chr6 150620809 150621340 -31793902 - L1MA3 LINE L1 -194 6111 5609 202 29 57 0 chr6 150621384 150621419 -31793823 + (TA)n Simple_repeat Simple_repeat 2 38 0 636 144 0 0 chr6 150622123 150622220 -31793022 + FRAM SINE Alu 59 155 -21 349 318 282 0 chr6 150622269 150622464 -31792778 - MIR SINE MIR 0 262 13 347 274 5 59 chr6 150622494 150622684 -31792558 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 5979 109 9 17 chr6 150622862 150623808 -31791434 - L1P LINE L1 -967 5179 4241 1110 107 24 139 chr6 150623817 150624069 -31791173 - AluSg/x SINE Alu -6 306 84 31 26 0 0 chr6 150624099 150624137 -31791105 + AT_rich Low_complexity Low_complexity 1 38 0 454 193 0 0 chr6 150624140 150624223 -31791019 - L1P LINE L1 -1916 4230 4148 * 6136 109 6 1 chr6 150624217 150625180 -31790062 + L1PA10 LINE L1 5182 6148 -20 29 28 0 0 chr6 150625191 150625227 -31790015 + AT_rich Low_complexity Low_complexity 1 36 0 392 263 0 0 chr6 150625424 150625500 -31789742 - MER2 DNA MER2_type -1 344 269 892 183 23 6 chr6 150625526 150625701 -31789541 - MER2 DNA MER2_type -135 210 33 1908 148 3 0 chr6 150626169 150626497 -31788745 + AluSq SINE Alu 1 329 0 2414 78 0 0 chr6 150626880 150627188 -31788054 + AluY SINE Alu 1 308 -3 21 0 0 0 chr6 150628096 150628117 -31787125 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr6 150628177 150628216 -31787026 + AT_rich Low_complexity Low_complexity 1 39 0 294 295 105 0 chr6 150628498 150628593 -31786649 - MIR3 SINE MIR -17 191 87 43 47 0 0 chr6 150628601 150628665 -31786577 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr6 150628898 150628919 -31786323 + AT_rich Low_complexity Low_complexity 1 21 0 363 267 11 45 chr6 150629086 150629262 -31785980 + L1MEd LINE L1 1088 1257 -4862 277 314 24 8 chr6 150629357 150629481 -31785761 + L1MEd LINE L1 1424 1549 -4761 28 48 0 0 chr6 150629677 150629719 -31785523 + AT_rich Low_complexity Low_complexity 1 42 0 354 23 0 0 chr6 150630498 150630541 -31784701 + (TC)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr6 150630543 150630565 -31784677 + (TA)n Simple_repeat Simple_repeat 2 23 0 290 294 114 30 chr6 150631017 150631218 -31784024 + MLT1L LTR MaLR 214 431 -184 1451 249 12 0 chr6 150631411 150631737 -31783505 - L1MDa LINE L1 -6142 398 69 378 406 41 9 chr6 150631762 150632082 -31783160 + MER115 DNA AcHobo 284 613 -80 14528 146 13 14 chr6 150632114 150632497 -31782745 - Tigger1 DNA MER2_type -2 2416 2034 2172 112 3 6 chr6 150632497 150632810 -31782432 - AluSx SINE Alu 0 312 1 14528 146 13 14 chr6 150632810 150634044 -31781198 - Tigger1 DNA MER2_type -384 2034 801 2817 154 39 49 chr6 150634044 150634226 -31781016 - MER4B LTR ERV1 -4 606 424 1972 135 7 7 chr6 150634226 150634530 -31780712 + AluSg1 SINE Alu 1 304 -5 2817 154 39 49 chr6 150634530 150634959 -31780283 - MER4B LTR ERV1 -186 424 1 14528 146 13 14 chr6 150634959 150635759 -31779483 - Tigger1 DNA MER2_type -1617 801 1 245 159 0 29 chr6 150635819 150635888 -31779354 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2539 122 0 5 chr6 150637044 150637412 -31777830 + THE1C LTR MaLR 1 366 -9 191 195 11 58 chr6 150638717 150638804 -31776438 + CT-rich Low_complexity Low_complexity 2 84 0 216 283 33 0 chr6 150639060 150639120 -31776122 - L2 LINE L2 -5 3267 3206 197 311 0 66 chr6 150639355 150639416 -31775826 - L2 LINE L2 -17 3255 3199 244 245 0 0 chr6 150639575 150639624 -31775618 - Tigger5 DNA MER2_type -2 2321 2273 363 292 149 83 chr6 150639843 150640347 -31774895 - L1M2 LINE L1 -5863 986 450 6884 175 132 26 chr6 150640405 150641951 -31773291 + MER52A LTR ERV1 46 1755 0 659 212 17 63 chr6 150641966 150642268 -31772974 + L1 LINE L1 2881 3168 -2978 490 306 30 19 chr6 150642290 150642558 -31772684 + L1 LINE L1 3297 3567 -2579 341 152 38 25 chr6 150643935 150644014 -31771228 - MADE1 DNA Mariner 0 80 1 446 351 60 4 chr6 150645049 150645300 -31769942 + LTR33 LTR ERVL 14 278 -243 27 49 0 0 chr6 150646390 150646431 -31768811 + AT_rich Low_complexity Low_complexity 1 41 0 190 292 56 0 chr6 150646533 150646605 -31768637 - MIR SINE MIR -113 149 74 346 358 43 14 chr6 150646771 150646978 -31768264 + MIR SINE MIR 16 228 -34 303 96 0 0 chr6 150646978 150647030 -31768212 + (A)n Simple_repeat Simple_repeat 1 52 0 468 255 25 28 chr6 150647363 150647509 -31767733 - MER63A DNA MER1_type -28 182 34 496 246 34 0 chr6 150647578 150647696 -31767546 + MER5C DNA MER1_type 1 122 -202 200 220 0 0 chr6 150647726 150647785 -31767457 + MER5C DNA MER1_type 214 272 -52 2883 111 78 2 chr6 150648726 150649185 -31766057 + LOR1a LTR ERV1 1 494 -3 9478 138 32 11 chr6 150649187 150651114 -31764128 + LOR1a-int LTR ERV1 13 1797 -6323 * 12655 123 64 23 chr6 150651113 150653315 -31761927 + LOR1a-int LTR ERV1 1940 4231 -3889 7787 122 46 9 chr6 150653311 150654599 -31760643 + LOR1a-int LTR ERV1 4729 6063 -2057 * 594 125 0 0 chr6 150654600 150654688 -31760554 + LOR1a-int LTR ERV1 8031 8118 -2 3063 148 12 4 chr6 150654691 150655184 -31760058 + LOR1a LTR ERV1 1 497 0 672 250 6 19 chr6 150655814 150655970 -31759272 + FRAM SINE Alu 14 167 -9 576 280 22 27 chr6 150656180 150656405 -31758837 - L1ME2 LINE L1 -9 6155 5932 2294 177 70 7 chr6 150656513 150656942 -31758300 - LOR1b LTR ERV1 0 461 6 1041 291 81 14 chr6 150656944 150657428 -31757814 - L1ME2 LINE L1 -394 5770 5255 228 67 0 0 chr6 150657441 150657471 -31757771 + (TA)n Simple_repeat Simple_repeat 1 30 0 241 159 36 22 chr6 150657541 150657679 -31757563 + (TA)n Simple_repeat Simple_repeat 2 141 0 315 196 34 34 chr6 150657746 150657889 -31757353 + (TA)n Simple_repeat Simple_repeat 1 144 0 261 0 0 0 chr6 150657889 150657918 -31757324 + (CA)n Simple_repeat Simple_repeat 2 30 0 825 276 93 30 chr6 150657928 150658489 -31756753 - L1ME2 LINE L1 -921 5225 4630 763 241 59 103 chr6 150658527 150659051 -31756191 - L1ME2 LINE L1 -1 6163 5663 237 267 12 0 chr6 150659722 150659808 -31755434 - L1ME LINE L1 -240 5881 5795 25 0 0 0 chr6 150660876 150660901 -31754341 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr6 150661045 150661071 -31754171 + AT_rich Low_complexity Low_complexity 1 26 0 1982 149 0 0 chr6 150661071 150661373 -31753869 - AluSx SINE Alu -8 304 3 1531 188 6 41 chr6 150661688 150662008 -31753234 - AluJb SINE Alu -3 309 1 2214 76 13 0 chr6 150662892 150663195 -31752047 + AluY SINE Alu 1 307 -4 238 320 179 19 chr6 150663436 150663592 -31751650 + L1ME3A LINE L1 5952 6132 -38 180 77 0 0 chr6 150663795 150663821 -31751421 + (TG)n Simple_repeat Simple_repeat 2 27 0 26 50 0 0 chr6 150664217 150664257 -31750985 + AT_rich Low_complexity Low_complexity 1 40 0 272 239 30 0 chr6 150664568 150664635 -31750607 + GA-rich Low_complexity Low_complexity 3 71 0 1882 222 73 22 chr6 150664635 150665143 -31750099 + MLT2B3 LTR ERVL 1 534 -20 498 136 0 0 chr6 150665143 150665224 -31750018 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 290 114 0 0 chr6 150665224 150665268 -31749974 + MLT2B3 LTR ERVL 503 546 -8 258 269 171 40 chr6 150665528 150665703 -31749539 + MLT1J LTR MaLR 310 507 -4 187 286 107 0 chr6 150665711 150665767 -31749475 - L2 LINE L2 -17 3255 3194 204 313 50 20 chr6 150666457 150666556 -31748686 + L2 LINE L2 2124 2225 -1089 1010 272 100 54 chr6 150666736 150667147 -31748095 - L1ME3A LINE L1 -80 6326 5872 2262 49 0 3 chr6 150667147 150667434 -31747808 - L1PA4 LINE L1 0 6155 5870 1010 272 100 54 chr6 150667434 150667684 -31747558 - L1ME3A LINE L1 -534 5872 5635 444 294 43 43 chr6 150667694 150668021 -31747221 - L1ME3A LINE L1 -845 5537 5211 2397 297 112 25 chr6 150668050 150668251 -31746991 - L1ME3A LINE L1 -1293 5089 4907 405 0 0 0 chr6 150668251 150668296 -31746946 + (CA)n Simple_repeat Simple_repeat 1 45 0 2397 297 112 25 chr6 150668296 150670384 -31744858 - L1ME3A LINE L1 -1475 4907 2602 451 270 60 59 chr6 150670387 150670724 -31744518 - L1ME3A LINE L1 -3932 2452 2174 233 313 77 12 chr6 150670836 150671093 -31744149 - L1MC/D LINE L1 -2214 6092 5822 2534 260 91 58 chr6 150671341 150672541 -31742701 - L1MC/D LINE L1 -4852 1690 452 559 290 63 26 chr6 150672623 150672926 -31742316 - L1MC/D LINE L1 -6220 322 9 186 43 0 0 chr6 150672962 150672985 -31742257 + (TG)n Simple_repeat Simple_repeat 2 24 0 566 281 61 23 chr6 150673037 150673374 -31741868 - L1ME3A LINE L1 -287 5883 5532 21 36 0 0 chr6 150673793 150673821 -31741421 + AT_rich Low_complexity Low_complexity 1 28 0 759 337 102 29 chr6 150673976 150674938 -31740304 - L2 LINE L2 0 3313 2227 362 184 126 0 chr6 150675024 150675111 -31740131 + L1MC3 LINE L1 6896 6993 -792 2479 122 6 0 chr6 150675126 150675479 -31739763 - THE1A LTR MaLR 0 355 1 10419 101 25 19 chr6 150675479 150677049 -31738193 - THE1A-int LTR MaLR 0 1580 1 2565 99 3 0 chr6 150677049 150677391 -31737851 - THE1A LTR MaLR 0 355 13 2693 217 75 11 chr6 150677391 150678111 -31737131 + L1MC3 LINE L1 7019 7784 -1 252 175 0 18 chr6 150678175 150678232 -31737010 - L1MC4 LINE L1 -1339 6703 6648 252 265 0 82 chr6 150678220 150678318 -31736924 + L1MC4 LINE L1 6614 6703 -1339 218 321 0 12 chr6 150678318 150678402 -31736840 + (TATATG)n Simple_repeat Simple_repeat 3 85 0 582 219 45 7 chr6 150678457 150678612 -31736630 - L1MC3 LINE L1 -1 7784 7624 237 130 0 0 chr6 150678743 150678789 -31736453 + LTR66 LTR ERVL 394 439 -171 211 244 0 0 chr6 150678790 150678835 -31736407 + (TA)n Simple_repeat Simple_repeat 2 46 0 254 225 9 20 chr6 150678835 150678944 -31736298 - L1MC4 LINE L1 -1339 6983 2006 250 109 0 0 chr6 150678949 150678995 -31736247 - LTR66 LTR ERVL -171 439 394 411 113 0 0 chr6 150678995 150679057 -31736185 + (CA)n Simple_repeat Simple_repeat 2 63 0 270 0 0 0 chr6 150679057 150679087 -31736155 + (TA)n Simple_repeat Simple_repeat 2 31 0 646 128 0 0 chr6 150679087 150679181 -31736061 - THE1-int LTR MaLR -665 915 822 530 154 56 0 chr6 150680033 150680176 -31735066 + (CATATA)n Simple_repeat Simple_repeat 4 154 0 6230 58 22 16 chr6 150680394 150680718 -31734524 + L1PA8A LINE L1 5153 5474 -657 1950 98 0 11 chr6 150680718 150680984 -31734258 + AluSc SINE Alu 32 294 -15 6230 58 22 16 chr6 150680984 150681606 -31733636 + L1PA8A LINE L1 5474 6107 -24 193 29 29 29 chr6 150681606 150681641 -31733601 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6230 58 22 16 chr6 150681641 150681666 -31733576 + L1PA8A LINE L1 6107 6130 -1 777 323 32 42 chr6 150682687 150683090 -31732152 - MLT1I LTR MaLR -8 401 3 412 167 0 0 chr6 150683286 150683352 -31731890 - U4 snRNA snRNA -77 68 3 3249 172 20 27 chr6 150683354 150684067 -31731175 - L1MC2 LINE L1 -437 5907 5198 443 219 0 0 chr6 150684089 150684171 -31731071 + MLT1D LTR MaLR 1 82 -423 * 677 195 13 47 chr6 150684167 150684316 -31730926 + MLT1D LTR MaLR 362 505 0 228 244 0 0 chr6 150684976 150685021 -31730221 + L2 LINE L2 3225 3269 -3 3393 143 0 2 chr6 150685338 150685834 -31729408 + MER1A DNA MER1_type 35 529 0 194 62 31 0 chr6 150685889 150685921 -31729321 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 23 33 0 0 chr6 150686393 150686423 -31728819 + AT_rich Low_complexity Low_complexity 1 30 0 1240 169 50 117 chr6 150686475 150686930 -31728312 - L1ME1 LINE L1 -181 5985 5561 712 256 33 8 chr6 150686931 150687173 -31728069 - L1MC2 LINE L1 -1098 5048 4801 404 225 77 71 chr6 150687175 150687357 -31727885 - L1MC2 LINE L1 -2890 3256 3074 4121 235 55 69 chr6 150687420 150687800 -31727442 - L1MC3 LINE L1 -14 7771 7387 1934 137 10 0 chr6 150687800 150688107 -31727135 - AluSx SINE Alu -2 310 1 4121 235 55 69 chr6 150688107 150689370 -31725872 - L1MC3 LINE L1 -398 7387 6151 633 311 38 66 chr6 150689477 150689966 -31725276 - L2 LINE L2 -103 3210 2737 1989 322 150 34 chr6 150689977 150691494 -31723748 - L2 LINE L2 -1286 2028 337 1119 245 86 5 chr6 150691527 150691899 -31723343 - Zaphod DNA AcHobo -34 3997 3596 1869 261 82 46 chr6 150691908 150692761 -31722481 - Zaphod DNA AcHobo -3095 936 53 180 179 0 0 chr6 150693555 150693594 -31721648 + (TA)n Simple_repeat Simple_repeat 1 39 0 214 239 0 0 chr6 150694417 150694463 -31720779 - L2 LINE L2 0 3313 3268 504 311 53 0 chr6 150694714 150694865 -31720377 - MIR SINE MIR -103 159 1 185 222 0 0 chr6 150695508 150695553 -31719689 - L2 LINE L2 -106 3207 3163 25 0 0 0 chr6 150695818 150695843 -31719399 + AT_rich Low_complexity Low_complexity 1 25 0 306 258 105 40 chr6 150696449 150696573 -31718669 + L2 LINE L2 3182 3313 0 2366 149 17 27 chr6 150697026 150697436 -31717806 - Tigger2a DNA MER2_type -28 406 1 189 0 0 0 chr6 150697732 150697753 -31717489 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1508 211 0 30 chr6 150697759 150698062 -31717180 - AluJo SINE Alu -18 294 1 282 171 0 0 chr6 150698147 150698217 -31717025 + (GAATG)n Simple_repeat Simple_repeat 1 70 0 786 252 37 0 chr6 150698625 150698843 -31716399 + L1MD3 LINE L1 7617 7842 -153 2113 175 69 21 chr6 150698843 150699277 -31715965 - MER66B LTR ERV1 0 486 32 2744 80 120 0 chr6 150699279 150699679 -31715563 + LTR7 LTR ERV1 1 448 -2 25939 97 52 11 chr6 150699681 150703519 -31711723 + HERVH LTR ERV1 1 3993 -3720 14400 65 5 1 chr6 150703516 150705348 -31709894 + HERVH LTR ERV1 4481 6319 -1394 * 2325 108 32 32 chr6 150705448 150705826 -31709416 + L1PA11 LINE L1 5792 6169 -5 496 320 86 18 chr6 150705889 150706283 -31708959 + L1M4 LINE L1 2394 2814 -3332 9391 164 46 1 chr6 150806464 150808103 -31607139 - Tigger1 DNA MER2_type -659 1759 47 1408 268 128 24 chr6 150808103 150808827 -31606415 - L1ME3A LINE L1 -28 6142 5343 859 146 0 0 chr6 150808845 150808975 -31606267 - AluSg/x SINE Alu -11 298 169 2087 184 19 5 chr6 150809076 150809488 -31605754 - L1MD3 LINE L1 -108 7887 7470 623 292 122 24 chr6 150809490 150809915 -31605327 - L1ME3A LINE L1 -958 5188 4722 931 163 12 0 chr6 150809930 150810090 -31605152 - L1MC1 LINE L1 -1 6332 6171 4135 192 43 119 chr6 150810095 150810756 -31604486 - L1MC1 LINE L1 -222 6111 5401 2712 13 0 0 chr6 150810756 150811061 -31604181 - AluYa5 SINE Alu -6 305 1 4135 192 43 119 chr6 150811061 150811131 -31604111 - L1MC1 LINE L1 -932 5401 5327 255 79 0 0 chr6 150811131 150811169 -31604073 + (CA)n Simple_repeat Simple_repeat 2 39 0 4135 192 43 119 chr6 150811169 150811723 -31603519 - L1MC1 LINE L1 -1006 5327 4732 2044 114 0 0 chr6 150811723 150812029 -31603213 - AluY SINE Alu 0 306 1 4135 192 43 119 chr6 150812029 150812085 -31603157 - L1MC1 LINE L1 -1601 4732 4673 391 171 118 0 chr6 150812085 150812161 -31603081 - Tigger5 DNA MER2_type 0 2323 2239 4135 192 43 119 chr6 150812161 150812208 -31603034 - L1MC1 LINE L1 -1660 4673 4624 323 260 0 0 chr6 150812208 150812281 -31602961 - Tigger5 DNA MER2_type 0 2323 2251 252 268 0 0 chr6 150812249 150812305 -31602937 - Tigger5 DNA MER2_type -2267 56 1 * 4135 192 43 119 chr6 150812305 150812414 -31602828 - L1MC1 LINE L1 -1733 4600 4482 1674 183 7 20 chr6 150812414 150812720 -31602522 + AluSx SINE Alu 1 302 -10 4135 192 43 119 chr6 150812720 150813211 -31602031 - L1MC1 LINE L1 -1851 4482 4133 306 169 56 56 chr6 150813215 150813304 -31601938 - L1ME3A LINE L1 -1441 4705 4617 240 263 99 20 chr6 150813417 150813569 -31601673 - L1ME3A LINE L1 -1718 4428 4265 466 164 48 0 chr6 150813755 150813859 -31601383 + Tigger7 DNA MER2_type 2292 2400 -87 1651 127 28 0 chr6 150813895 150814147 -31601095 - MSTA LTR MaLR 0 428 170 1047 128 118 16 chr6 150814180 150814367 -31600875 - MSTA LTR MaLR 0 428 223 300 287 213 0 chr6 150814610 150814746 -31600496 - MLT1E2 LTR MaLR -327 299 135 22 56 0 0 chr6 150815794 150815830 -31599412 + AT_rich Low_complexity Low_complexity 1 36 0 682 210 59 28 chr6 150816066 150816296 -31598946 + L1MB8 LINE L1 5188 5423 -751 9016 104 10 7 chr6 150816300 150817563 -31597679 + HSMAR1 DNA Mariner 1 1267 -20 2285 263 49 10 chr6 150817569 150818282 -31596960 + L1MB8 LINE L1 5443 6183 -1 21 0 0 0 chr6 150818459 150818480 -31596762 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr6 150818493 150818525 -31596717 + (T)n Simple_repeat Simple_repeat 1 32 0 22 70 0 0 chr6 150820061 150820104 -31595138 + AT_rich Low_complexity Low_complexity 1 43 0 318 246 74 41 chr6 150821489 150821611 -31593631 + L1MC4 LINE L1 7916 8041 -1 280 171 53 0 chr6 150821713 150821789 -31593453 + A-rich Low_complexity Low_complexity 1 80 0 235 266 128 37 chr6 150823280 150823389 -31591853 + MIR SINE MIR 144 262 0 1369 186 19 41 chr6 150823633 150823762 -31591480 - L1MC2 LINE L1 0 6344 6214 2991 141 12 19 chr6 150823762 150824280 -31590962 - MER75 DNA T2_type 0 514 1 1369 186 19 41 chr6 150824280 150824468 -31590774 - L1MC2 LINE L1 -130 6214 6034 763 58 69 5 chr6 150824882 150825087 -31590155 + (TA)n Simple_repeat Simple_repeat 1 218 0 252 252 8 15 chr6 150825299 150825430 -31589812 + GA-rich Low_complexity Low_complexity 1 130 0 299 96 19 0 chr6 150825690 150825742 -31589500 + (GA)n Simple_repeat Simple_repeat 1 53 0 29 49 0 16 chr6 150825947 150825983 -31589259 + AT_rich Low_complexity Low_complexity 1 37 -23 2077 123 0 0 chr6 150825983 150826284 -31588958 - AluSx SINE Alu -11 301 1 29 49 0 16 chr6 150826284 150826308 -31588934 + AT_rich Low_complexity Low_complexity 37 60 0 261 259 0 0 chr6 150826352 150826410 -31588832 + (CATATA)n Simple_repeat Simple_repeat 4 61 0 338 242 42 73 chr6 150827080 150827245 -31587997 - MER112 DNA MER1_type -92 168 9 6247 132 17 19 chr6 150829099 150829921 -31585321 - L1MA6 LINE L1 -5 6295 5472 1860 105 0 0 chr6 150829921 150830168 -31585074 + AluSg SINE Alu 50 296 -14 6247 132 17 19 chr6 150830168 150830412 -31584830 - L1MA6 LINE L1 -828 5472 5229 284 264 121 0 chr6 150830672 150830763 -31584479 - L1MEd LINE L1 -5475 644 543 347 232 143 60 chr6 150831358 150831526 -31583716 + HAL1 LINE L1 1005 1186 -1321 318 268 89 68 chr6 150831651 150832021 -31583221 + L1MCc LINE L1 97 474 -5965 261 128 0 0 chr6 150832507 150832554 -31582688 + (CA)n Simple_repeat Simple_repeat 2 48 0 517 266 52 35 chr6 150832575 150832865 -31582377 + L1MCc LINE L1 1315 1609 -5348 1346 284 67 39 chr6 150832881 150833800 -31581442 + L1MCc LINE L1 1931 3078 -4060 381 208 0 0 chr6 150833808 150833885 -31581357 + L1MD3 LINE L1 7702 7778 -217 399 317 75 34 chr6 150834079 150834347 -31580895 + L1MCc LINE L1 11 289 -6570 180 0 0 0 chr6 150834726 150834746 -31580496 + (TC)n Simple_repeat Simple_repeat 2 21 0 246 203 27 27 chr6 150834755 150834775 -31580467 + MLT2A2 LTR ERVL 403 422 -31 258 32 0 0 chr6 150834775 150834806 -31580436 + (CA)n Simple_repeat Simple_repeat 2 32 0 246 203 27 27 chr6 150834806 150834859 -31580383 + MLT2A2 LTR ERVL 421 453 0 357 332 113 42 chr6 150834874 150835139 -31580103 + L1MCc LINE L1 906 1189 -5666 1104 271 86 29 chr6 150835303 150835317 -31579925 + L1MCc LINE L1 1262 1274 -5581 2551 142 31 17 chr6 150835317 150835739 -31579503 + MSTC LTR MaLR 1 428 0 1104 271 86 29 chr6 150835739 150836377 -31578865 + L1MCc LINE L1 1274 1951 -4904 1352 275 52 35 chr6 150836402 150837057 -31578185 + L1MCc LINE L1 3168 3833 -3124 839 219 31 15 chr6 150837057 150837253 -31577989 - MLT1A1 LTR MaLR 0 365 167 349 260 30 20 chr6 150837389 150837489 -31577753 - MLT1A1 LTR MaLR -264 101 1 2490 249 65 62 chr6 150837489 150838821 -31576421 + L1MCc LINE L1 3829 5165 -1792 1233 219 144 45 chr6 150838820 150839285 -31575957 + L1MB7 LINE L1 5672 6182 -2 * 1664 174 7 17 chr6 150839339 150839633 -31575609 - AluJb SINE Alu -21 291 1 32 43 0 0 chr6 150840448 150840494 -31574748 + AT_rich Low_complexity Low_complexity 1 46 0 2296 105 0 3 chr6 150841091 150841404 -31573838 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 150841470 150841492 -31573750 + AT_rich Low_complexity Low_complexity 1 22 0 1796 252 78 30 chr6 150843116 150843882 -31571360 + L1M4 LINE L1 4121 4923 -1223 715 108 39 0 chr6 150843939 150844041 -31571201 + MER4B LTR ERV1 505 610 0 818 241 36 23 chr6 150844041 150844261 -31570981 - L1MDa LINE L1 -6317 223 1 3172 104 14 94 chr6 150844263 150844838 -31570404 - MER4A LTR ERV1 -134 530 2 3370 277 69 25 chr6 150844856 150846042 -31569200 + L1MD2 LINE L1 237 1475 -5065 568 214 8 8 chr6 150846031 150846157 -31569085 + L1MD2 LINE L1 2076 2201 -4339 * 1379 232 55 10 chr6 150846138 150846535 -31568707 + L1MD2 LINE L1 2077 2491 -4049 6503 259 49 37 chr6 150846541 150849449 -31565793 + L1MD2 LINE L1 3107 5980 -656 217 0 0 0 chr6 150849449 150849473 -31565769 + (TTTG)n Simple_repeat Simple_repeat 1 148 0 1366 207 33 18 chr6 150849473 150849748 -31565494 - AluJo SINE Alu -4 301 3 6503 259 49 37 chr6 150849748 150850313 -31564929 + L1MD2 LINE L1 5979 6628 -8 202 109 18 73 chr6 150850871 150850926 -31564316 + (TTTTTG)n Simple_repeat Simple_repeat 5 56 0 1146 204 54 114 chr6 150851439 150851826 -31563416 + MLT1A1 LTR MaLR 2 365 0 6676 232 27 22 chr6 150852210 150854852 -31560390 - L1MC1 LINE L1 -18 6315 3660 * 10988 188 58 9 chr6 150854848 150856084 -31559158 - L1PA15-16 LINE L1 -3420 3429 2254 199 54 54 0 chr6 150856084 150856121 -31559121 + T-rich Low_complexity Low_complexity 2 40 0 10988 188 58 9 chr6 150856121 150856303 -31558939 - L1PA15-16 LINE L1 -4595 2254 2082 1848 156 0 26 chr6 150856303 150856605 -31558637 - AluSx SINE Alu -18 294 1 10988 188 58 9 chr6 150856605 150858801 -31556441 - L1PA15-16 LINE L1 -4767 2082 2 183 114 0 0 chr6 150859212 150859247 -31555995 + (CAGAGA)n Simple_repeat Simple_repeat 6 40 0 331 358 99 30 chr6 150859536 150859968 -31555274 - L2 LINE L2 -317 2955 2490 673 222 43 0 chr6 150860027 150860189 -31555053 + MER53 DNA DNA 21 189 0 181 269 32 43 chr6 150860254 150860347 -31554895 - L2 LINE L2 -965 2349 2258 792 308 79 53 chr6 150860661 150861128 -31554114 + LTR16C LTR ERVL 11 489 -2 264 369 54 0 chr6 150861603 150861733 -31553509 - L2 LINE L2 -1278 2036 1900 405 291 0 46 chr6 150861768 150861943 -31553299 + HAL1 LINE L1 1439 1605 -902 230 340 106 14 chr6 150862682 150862823 -31552419 - L2 LINE L2 -1605 1709 1556 13697 150 32 4 chr6 150864275 150866624 -31548618 + Tigger1 DNA MER2_type 4 2418 0 1579 266 89 32 chr6 150866665 150867003 -31548239 - L1ME3A LINE L1 -16 6223 5906 1268 236 111 11 chr6 150867003 150867363 -31547879 + MSTD LTR MaLR 1 396 0 1579 266 89 32 chr6 150867363 150867871 -31547371 - L1ME3A LINE L1 -333 5906 5325 22 0 0 0 chr6 150867938 150867960 -31547282 + AT_rich Low_complexity Low_complexity 1 22 0 258 81 0 0 chr6 150867977 150868014 -31547228 + (TG)n Simple_repeat Simple_repeat 2 38 0 930 239 38 38 chr6 150868136 150868374 -31546868 - Cheshire DNA MER1_type -2077 343 106 1384 275 106 45 chr6 150868375 150869553 -31545689 - L1ME3A LINE L1 -2567 3648 2399 15648 72 19 27 chr6 150869670 150871831 -31543411 - HERVL LTR ERVL -3310 2344 201 1871 212 24 5 chr6 150871831 150872213 -31543029 + LTR53 LTR ERVL 131 519 0 1548 206 98 30 chr6 150872297 150872734 -31542508 + MLT1C LTR MaLR 1 467 0 27 0 0 0 chr6 150874185 150874212 -31541030 + AT_rich Low_complexity Low_complexity 1 27 0 29 47 0 0 chr6 150875134 150875177 -31540065 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 150875605 150875626 -31539616 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 150877517 150877541 -31537701 + AT_rich Low_complexity Low_complexity 1 24 0 315 0 0 0 chr6 150877765 150877800 -31537442 + (TG)n Simple_repeat Simple_repeat 2 36 0 865 62 27 0 chr6 150877804 150877916 -31537326 - L1PA7 LINE L1 -13 6141 6027 699 232 27 9 chr6 150877950 150878170 -31537072 - L1ME3A LINE L1 -4006 2390 2167 * 1658 213 32 5 chr6 150878154 150878557 -31536685 - L1MB8 LINE L1 -239 5939 5526 2426 104 62 3 chr6 150878597 150878951 -31536291 - THE1C LTR MaLR 0 375 1 8125 132 136 1 chr6 150878951 150880322 -31534920 - THE1C-int LTR MaLR 0 1580 26 2453 126 5 3 chr6 150880364 150880738 -31534504 - THE1C LTR MaLR 0 375 1 1208 211 56 1 chr6 150880740 150881195 -31534047 - L1MB8 LINE L1 -674 5504 5024 1299 208 0 37 chr6 150881197 150881466 -31533776 + AluJo SINE Alu 9 267 -45 360 0 0 0 chr6 150881499 150881539 -31533703 + (TA)n Simple_repeat Simple_repeat 1 40 0 183 42 0 0 chr6 150881538 150881562 -31533680 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 1037 225 49 21 chr6 150881572 150881856 -31533386 - L1MB8 LINE L1 -1115 5031 4740 30 45 0 0 chr6 150882123 150882167 -31533075 + AT_rich Low_complexity Low_complexity 1 44 0 210 167 0 0 chr6 150883321 150883381 -31531861 + (TA)n Simple_repeat Simple_repeat 2 61 0 307 312 28 0 chr6 150884983 150885092 -31530150 - MER94 DNA DNA -12 122 11 28 99 0 0 chr6 150885669 150885760 -31529482 + AT_rich Low_complexity Low_complexity 1 91 0 1279 259 50 65 chr6 150886756 150887160 -31528082 + L1MC5 LINE L1 6971 7363 -598 2072 107 16 26 chr6 150887160 150887470 -31527772 + AluSx SINE Alu 1 307 -5 1279 259 50 65 chr6 150887470 150887741 -31527501 + L1MC5 LINE L1 7363 7636 -325 315 301 0 10 chr6 150888031 150888134 -31527108 + (TA)n Simple_repeat Simple_repeat 2 103 0 2228 50 0 0 chr6 150889436 150889715 -31525527 + L1PA4 LINE L1 5875 6153 -2 723 71 0 0 chr6 150890644 150890742 -31524500 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 7243 147 20 28 chr6 150891146 150892457 -31522785 + HSMAR2 DNA Mariner 1 1301 -1 227 319 9 0 chr6 150892519 150892632 -31522610 - L1MB8 LINE L1 -1484 4662 4549 390 308 124 35 chr6 150892928 150893849 -31521393 - L1MB8 LINE L1 -2040 4106 3104 6957 197 121 17 chr6 150894027 150897055 -31518187 - L1MB1 LINE L1 0 6168 2816 471 194 101 22 chr6 150897055 150897194 -31518048 + MER89 LTR ERV1 410 559 0 2120 99 49 0 chr6 150897286 150897570 -31517672 - AluSp SINE Alu -15 298 1 947 252 10 0 chr6 150897846 150898052 -31517190 + MER58A DNA MER1_type 1 208 -16 603 310 60 7 chr6 150898078 150898378 -31516864 - L1MEc LINE L1 -5336 1060 745 461 205 0 0 chr6 150898424 150898507 -31516735 - MLT1C LTR MaLR -384 83 1 486 318 104 3 chr6 150898632 150899052 -31516190 - MLT1J LTR MaLR -34 477 1 293 346 92 22 chr6 150899515 150899700 -31515542 - MIR SINE MIR -34 228 31 308 320 120 40 chr6 150899820 150900095 -31515147 + L3 LINE CR1 1169 1465 -112 451 245 75 13 chr6 150900160 150900319 -31514923 + MLT1C LTR MaLR 6 174 -293 415 72 29 0 chr6 150900325 150900394 -31514848 - L1P LINE L1 -775 5391 5321 184 42 0 0 chr6 150900394 150900418 -31514824 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 339 236 0 14 chr6 150900418 150900490 -31514752 - AluJb SINE Alu -1 300 207 1529 193 119 3 chr6 150900490 150900868 -31514374 - L1P LINE L1 -815 5331 4910 * 5006 122 12 12 chr6 150900856 150901620 -31513622 + L1PA16 LINE L1 5394 6157 -9 746 274 52 24 chr6 150901634 150901922 -31513320 + MLT1C LTR MaLR 171 466 -1 398 241 0 12 chr6 150902561 150902644 -31512598 - MER58B DNA MER1_type -17 324 243 670 243 0 0 chr6 150903336 150903505 -31511737 + L1 LINE L1 4205 4373 -1773 25 0 0 0 chr6 150904050 150904075 -31511167 + AT_rich Low_complexity Low_complexity 1 25 0 1058 89 0 0 chr6 150904164 150904310 -31510932 - pTR5 LTR ERV1 -2046 392 247 234 0 0 0 chr6 150904310 150904336 -31510906 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7683 16 1 0 chr6 150904337 150906004 -31509238 - L1PA2 LINE L1 -12 6143 4475 9633 28 0 0 chr6 150906004 150907149 -31508093 + L1PA2 LINE L1 3318 4462 -1684 1344 81 0 5 chr6 150907150 150907347 -31507895 - pTR5 LTR ERV1 -2177 261 66 349 250 10 0 chr6 150907347 150907447 -31507795 - LTR30 LTR ERV1 -80 642 542 3107 139 55 56 chr6 150907447 150908313 -31506929 - pTR5 LTR ERV1 -415 2023 724 1319 195 53 68 chr6 150909140 150909342 -31505900 - MLT1A2 LTR MaLR 0 374 179 324 0 0 0 chr6 150909342 150909378 -31505864 + (GA)n Simple_repeat Simple_repeat 1 36 0 1319 195 53 68 chr6 150909378 150909555 -31505687 - MLT1A2 LTR MaLR -195 179 1 261 276 147 9 chr6 150909555 150909671 -31505571 + MER69A DNA AcHobo 45 176 -1 223 373 34 0 chr6 150910576 150910694 -31504548 - MIR3 SINE MIR 0 208 87 261 57 0 0 chr6 150910718 150910753 -31504489 + (A)n Simple_repeat Simple_repeat 1 35 0 272 298 48 0 chr6 150912317 150912401 -31502841 + HAL1 LINE L1 524 611 -1896 276 233 6 163 chr6 150912809 150912981 -31502261 + HAL1 LINE L1 2247 2391 -116 317 342 25 8 chr6 150913626 150913746 -31501496 - MLT1L LTR MaLR -404 211 90 307 325 90 42 chr6 150914096 150914453 -31500789 - L1M4 LINE L1 -2252 3894 3521 606 302 53 9 chr6 150914905 150915130 -31500112 + MIR SINE MIR 18 252 -10 1417 198 28 17 chr6 150915636 150915924 -31499318 - MLT2D LTR ERVL -123 291 1 44 46 0 0 chr6 150916278 150916343 -31498899 + AT_rich Low_complexity Low_complexity 1 65 0 1626 167 40 12 chr6 150916417 150916741 -31498501 + L1MC3 LINE L1 7442 7774 -11 689 270 60 41 chr6 150916760 150917079 -31498163 + L1ME LINE L1 36 360 -6036 2076 110 81 29 chr6 150917298 150917643 -31497599 - THE1B LTR MaLR -1 363 1 350 319 99 42 chr6 150917652 150917915 -31497327 + L1ME LINE L1 547 824 -5572 1259 146 0 0 chr6 150917919 150918118 -31497124 + L1PBa LINE L1 2 200 -6663 12504 137 98 7 chr6 150918120 150921145 -31494097 + L1PBa LINE L1 636 3941 -2921 2433 121 3 0 chr6 150921145 150921501 -31493741 + L1PB1 LINE L1 5785 6148 -3 12504 137 98 7 chr6 150921501 150921513 -31493729 + L1PBa LINE L1 3941 3950 -2912 1703 255 146 40 chr6 150921723 150922719 -31492523 + L1ME LINE L1 4129 5229 -986 296 296 9 9 chr6 150922840 150922948 -31492294 + L1ME LINE L1 5631 5738 -452 25 51 0 0 chr6 150923041 150923080 -31492162 + AT_rich Low_complexity Low_complexity 1 39 0 1786 274 49 53 chr6 150923528 150923966 -31491276 - L1MCa LINE L1 -1731 5210 4775 1843 153 0 34 chr6 150923966 150924287 -31490955 + AluJb SINE Alu 1 310 -2 1786 274 49 53 chr6 150924287 150924703 -31490539 - L1MCa LINE L1 -2166 4775 4359 1441 175 44 7 chr6 150924733 150925007 -31490235 - L1PB4 LINE L1 0 6156 5873 2366 126 13 8 chr6 150925080 150925453 -31489789 + THE1C LTR MaLR 1 375 0 427 271 84 4 chr6 150925496 150925897 -31489345 - L1MCa LINE L1 -3651 3290 2853 423 0 0 0 chr6 150925951 150925998 -31489244 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1125 108 0 0 chr6 150926004 150926152 -31489090 - AluSq SINE Alu -31 282 135 456 287 167 39 chr6 150926157 150926540 -31488702 - L1MCa LINE L1 -5124 1299 868 477 275 111 59 chr6 150926809 150927180 -31488062 - L1MCa LINE L1 -6004 419 30 2054 133 3 0 chr6 150928716 150929010 -31486232 - AluSg SINE Alu -15 295 1 228 254 15 15 chr6 150929488 150929555 -31485687 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1791 257 72 20 chr6 150929626 150930385 -31484857 + L1ME3 LINE L1 2110 2908 -3238 663 265 127 38 chr6 150930442 150931016 -31484226 + L1ME3 LINE L1 2788 3412 -2734 1297 235 42 79 chr6 150931028 150931598 -31483644 + L1ME3 LINE L1 4601 5149 -997 204 226 0 0 chr6 150931634 150931687 -31483555 + A-rich Low_complexity Low_complexity 3 55 0 1632 265 91 11 chr6 150931763 150932451 -31482791 + L1ME1 LINE L1 5388 6144 -20 22 70 0 0 chr6 150932453 150932496 -31482746 + AT_rich Low_complexity Low_complexity 1 43 0 183 244 22 0 chr6 150932506 150932551 -31482691 + L2 LINE L2 3025 3070 -243 442 297 103 35 chr6 150933585 150934416 -31480826 + L1MCc LINE L1 1290 2370 -4752 * 490 211 0 9 chr6 150934410 150934552 -31480690 + L1ME3 LINE L1 5232 5371 -775 289 275 26 30 chr6 150934535 150934641 -31480601 + L1MC2 LINE L1 6231 6333 0 * 271 311 34 8 chr6 150934637 150934756 -31480486 + L1M4c LINE L1 1643 1764 -4620 * 2162 109 0 10 chr6 150934841 150935143 -31480099 + AluSq SINE Alu 1 299 -14 501 258 133 62 chr6 150935201 150935736 -31479506 + L1M4c LINE L1 3020 3592 -2790 869 276 14 57 chr6 150935747 150936030 -31479212 + L1ME3 LINE L1 5826 6093 -69 1500 173 3 37 chr6 150936030 150936325 -31478917 + AluJb SINE Alu 28 312 0 869 276 14 57 chr6 150936325 150936393 -31478849 + L1ME3 LINE L1 6093 6162 0 618 248 106 15 chr6 150937312 150937510 -31477732 - L1ME1 LINE L1 -26 6140 5925 1722 141 78 25 chr6 150937847 150938167 -31477075 + MER1B DNA MER1_type 1 337 0 248 282 28 14 chr6 150938510 150938581 -31476661 - L2 LINE L2 -559 2755 2684 416 229 90 37 chr6 150938932 150939120 -31476122 - L1MC4 LINE L1 -155 7887 7690 333 0 0 0 chr6 150939138 150939175 -31476067 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr6 150939360 150939383 -31475859 + AT_rich Low_complexity Low_complexity 1 23 0 402 115 0 0 chr6 150939557 150939618 -31475624 + (TTA)n Simple_repeat Simple_repeat 2 62 0 243 103 0 0 chr6 150939659 150939698 -31475544 + (TC)n Simple_repeat Simple_repeat 2 40 0 228 67 0 0 chr6 150939698 150939728 -31475514 + (CA)n Simple_repeat Simple_repeat 2 31 0 305 284 31 76 chr6 150941054 150941279 -31473963 + L1MEd LINE L1 664 878 -5241 266 200 121 64 chr6 150941406 150941546 -31473696 + L1MEd LINE L1 929 1076 -5043 387 206 23 114 chr6 150942084 150942215 -31473027 - MIR SINE MIR -22 240 122 364 175 21 0 chr6 150942631 150942728 -31472514 + CT-rich Low_complexity Low_complexity 2 100 0 1563 262 43 46 chr6 150942793 150943465 -31471777 + L1MC4 LINE L1 7068 7737 -305 274 261 34 0 chr6 150943673 150943761 -31471481 + L1MC4 LINE L1 7924 8014 -28 21 71 0 0 chr6 150943917 150943959 -31471283 + AT_rich Low_complexity Low_complexity 1 42 0 2142 116 3 0 chr6 150944181 150944475 -31470767 - AluSg SINE Alu -13 297 3 335 211 237 31 chr6 150944762 150944956 -31470286 - MLT1H1 LTR MaLR -5 537 304 355 262 93 9 chr6 150945006 150945113 -31470129 - MLT1H1 LTR MaLR -439 116 1 357 298 0 33 chr6 150946052 150946173 -31469069 - MLT1H LTR MaLR -386 163 47 625 304 70 13 chr6 150946394 150946621 -31468621 + MIR SINE MIR 2 241 -21 594 0 0 0 chr6 150946740 150946806 -31468436 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 2039 118 13 32 chr6 150946868 150947183 -31468059 - AluSx SINE Alu -3 309 1 1642 211 46 3 chr6 150947420 150947770 -31467472 - MLT1A1 LTR MaLR 0 365 1 217 179 18 18 chr6 150948214 150948270 -31466972 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chr6 150949022 150949053 -31466189 + AT_rich Low_complexity Low_complexity 1 31 0 278 151 19 0 chr6 150950283 150950336 -31464906 + MADE1 DNA Mariner 1 54 -26 2603 312 81 14 chr6 150950581 150951728 -31463514 + L2 LINE L2 1794 3014 -299 309 326 8 31 chr6 150951782 150951911 -31463331 + L2 LINE L2 3163 3288 -25 221 355 105 0 chr6 150952092 150952216 -31463026 - MIR SINE MIR -16 246 110 196 292 107 36 chr6 150952706 150952874 -31462368 + L2 LINE L2 1990 2169 -1145 1093 201 55 8 chr6 150952904 150953158 -31462084 + ORSL DNA AcHobo 3 268 -7 379 284 256 4 chr6 150953177 150953427 -31461815 + L2 LINE L2 2805 3117 -196 22 35 0 0 chr6 150953427 150953456 -31461786 + AT_rich Low_complexity Low_complexity 1 29 0 4568 88 40 6 chr6 150953456 150954125 -31461117 - L1PB1 LINE L1 -1 6150 5459 42904 32 21 1 chr6 150954186 150960215 -31455027 - L1PA2 LINE L1 -2 6153 1 1075 132 19 0 chr6 150960217 150960376 -31454866 - FRAM SINE Alu -15 161 1 301 302 101 13 chr6 150960380 150960529 -31454713 + L2 LINE L2 3151 3312 -1 345 110 41 0 chr6 150961243 150961316 -31453926 + CT-rich Low_complexity Low_complexity 1 76 0 1514 123 36 43 chr6 150964344 150964645 -31450597 + L1MA3 LINE L1 6007 6305 0 206 156 22 0 chr6 150965439 150965484 -31449758 + (CA)n Simple_repeat Simple_repeat 1 46 0 1374 171 87 4 chr6 150965986 150966134 -31449108 - AluJo SINE Alu -25 287 153 224 29 0 29 chr6 150966134 150966168 -31449074 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1374 171 87 4 chr6 150966168 150966283 -31448959 - AluJo SINE Alu -159 153 2 223 294 0 0 chr6 150966532 150966583 -31448659 + L2 LINE L2 3263 3313 0 306 50 0 0 chr6 150966818 150966858 -31448384 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 2325 94 3 22 chr6 150967329 150967648 -31447594 - AluSp SINE Alu 0 313 1 1202 291 40 80 chr6 150967829 150968557 -31446685 - L1ME3A LINE L1 -9 6161 5463 1776 99 4 8 chr6 151019864 151020117 -31395125 + AluSq SINE Alu 59 310 -3 186 371 53 20 chr6 151021751 151021902 -31393340 + L2 LINE L2 1547 1702 -1612 40 21 0 0 chr6 151022136 151022183 -31393059 + AT_rich Low_complexity Low_complexity 1 47 0 328 328 27 22 chr6 151022348 151022531 -31392711 + L2 LINE L2 2224 2407 -907 605 197 16 36 chr6 151022630 151022696 -31392546 + MER53 DNA DNA 1 67 -122 2305 98 0 0 chr6 151022696 151023001 -31392241 - AluSx SINE Alu -7 305 1 605 197 16 36 chr6 151023001 151023127 -31392115 + MER53 DNA DNA 67 189 0 397 269 19 0 chr6 151023135 151023239 -31392003 + MLT1I LTR MaLR 304 409 0 1303 238 0 19 chr6 151024221 151024532 -31390710 - AluJo SINE Alu -5 307 3 358 322 33 28 chr6 151024681 151024895 -31390347 - LTR16A1 LTR ERVL -14 443 229 1210 225 28 95 chr6 151025201 151025592 -31389650 + MLT1A2 LTR MaLR 1 365 -9 4513 191 27 2 chr6 151025711 151026954 -31388288 + L1PA16 LINE L1 4767 6040 -126 1995 155 29 3 chr6 151027311 151027351 -31387891 + L1MB7 LINE L1 5785 5822 -362 1682 120 154 0 chr6 151027351 151027617 -31387625 + AluSp SINE Alu 1 307 -6 1995 155 29 3 chr6 151027617 151027956 -31387286 + L1MB7 LINE L1 5822 6174 -10 26 0 0 0 chr6 151028003 151028029 -31387213 + AT_rich Low_complexity Low_complexity 1 26 0 370 80 0 0 chr6 151029602 151029652 -31385590 + MADE1 DNA Mariner 1 50 -30 435 71 0 0 chr6 151029686 151029742 -31385500 - MADE1 DNA Mariner -24 56 1 847 282 144 42 chr6 151030554 151031264 -31383978 - L1MEd LINE L1 -3181 2948 2167 576 146 42 141 chr6 151031268 151031386 -31383856 - L1MC2 LINE L1 -1 6343 6250 1892 195 52 95 chr6 151031386 151031965 -31383277 - MLT2B3 LTR ERVL 0 554 1 576 146 42 141 chr6 151031965 151032038 -31383204 - L1MC2 LINE L1 -94 6250 6171 413 231 11 11 chr6 151032042 151032133 -31383109 + MSTD LTR MaLR 3 93 -303 2118 85 11 0 chr6 151032133 151032438 -31382804 + AluY SINE Alu 1 308 0 368 160 13 27 chr6 151032443 151032518 -31382724 + MSTD LTR MaLR 323 396 0 1662 185 49 3 chr6 151032518 151032843 -31382399 - L1MC2 LINE L1 -171 6173 5834 239 313 37 18 chr6 151033012 151033175 -31382067 - HAL1 LINE L1 -840 1667 1502 229 301 92 19 chr6 151033337 151033543 -31381699 - L1MEd LINE L1 -4862 1257 1037 213 257 19 29 chr6 151034528 151034633 -31380609 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 238 348 42 0 chr6 151034740 151034858 -31380384 - L1P4 LINE L1 -354 5807 5685 459 379 74 23 chr6 151035019 151035570 -31379672 + L2 LINE L2 2209 2838 -476 233 300 0 38 chr6 151035680 151035760 -31379482 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 246 279 132 15 chr6 151035998 151036134 -31379108 - L2 LINE L2 -3 3310 3159 832 261 49 8 chr6 151036141 151036386 -31378856 + MIR SINE MIR 3 257 -5 21 0 0 0 chr6 151036423 151036444 -31378798 + AT_rich Low_complexity Low_complexity 1 21 0 363 274 50 99 chr6 151036497 151036698 -31378544 + L1MEd LINE L1 328 518 -5601 941 253 26 30 chr6 151036876 151037261 -31377981 - LTR40b LTR ERVL -17 445 1 7486 277 52 50 chr6 151037277 151039025 -31376217 - HERVL40 LTR ERVL -19 5511 3755 1900 121 147 41 chr6 151039025 151039412 -31375830 + MSTA LTR MaLR 1 428 0 7486 277 52 50 chr6 151039412 151040469 -31374773 - HERVL40 LTR ERVL -1775 3755 2701 437 238 0 29 chr6 151040500 151040605 -31374637 - HERV16 LTR ERVL -4139 857 756 369 0 0 0 chr6 151040616 151040657 -31374585 + (TA)n Simple_repeat Simple_repeat 2 42 0 462 310 75 104 chr6 151040927 151041142 -31374100 - L1M4 LINE L1 -1548 4598 4378 1687 205 14 58 chr6 151041142 151041571 -31373671 - MLT2D LTR ERVL -4 410 1 462 310 75 104 chr6 151041571 151042326 -31372916 - L1M4 LINE L1 -1768 4378 3656 296 229 67 29 chr6 151042338 151042443 -31372799 - LTR33A LTR ERVL 0 523 415 216 0 0 0 chr6 151042992 151043016 -31372226 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 228 237 13 26 chr6 151043155 151043231 -31372011 - L1M4 LINE L1 -2713 3433 3359 1845 194 9 3 chr6 151043768 151044098 -31371144 - MLT1B LTR MaLR -58 332 1 2332 92 25 89 chr6 151044534 151044937 -31370305 - MER51B LTR ERV1 0 377 1 324 303 16 0 chr6 151045145 151045267 -31369975 + HAL1 LINE L1 1499 1622 -885 1912 172 60 73 chr6 151045463 151045847 -31369395 + MER67D LTR ERV1 5 382 -132 2032 93 10 23 chr6 151045847 151046157 -31369085 + AluSp SINE Alu 7 312 -1 1912 172 60 73 chr6 151046157 151046289 -31368953 + MER67D LTR ERV1 382 514 0 2054 243 79 45 chr6 151046464 151046556 -31368686 + L1M4 LINE L1 2803 2890 -3256 1197 128 27 0 chr6 151046556 151046743 -31368499 - L1PA10 LINE L1 -4 6164 5973 2054 243 79 45 chr6 151046743 151047563 -31367679 + L1M4 LINE L1 2890 3746 -2400 784 211 49 53 chr6 151047581 151047865 -31367377 - L1M4 LINE L1 -1460 4686 4404 21 0 0 0 chr6 151048266 151048287 -31366955 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 151048873 151048909 -31366333 + AT_rich Low_complexity Low_complexity 1 36 0 24 85 0 0 chr6 151049851 151049910 -31365332 + AT_rich Low_complexity Low_complexity 1 59 0 1583 198 7 10 chr6 151050126 151050429 -31364813 + AluJo SINE Alu 4 305 -7 183 222 0 22 chr6 151051768 151051813 -31363429 - L2 LINE L2 -8 3264 3221 727 106 0 0 chr6 151053955 151053970 -31361272 - AluSg/x SINE Alu 0 310 296 208 0 0 0 chr6 151053970 151053993 -31361249 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 727 106 0 0 chr6 151053993 151054081 -31361161 - AluSg/x SINE Alu -13 297 194 212 138 62 0 chr6 151054813 151054878 -31360364 + (TA)n Simple_repeat Simple_repeat 1 69 0 198 287 21 75 chr6 151055029 151055123 -31360119 + L2 LINE L2 1384 1472 -1842 10903 205 35 22 chr6 151055170 151055377 -31359865 - L1MC3 LINE L1 -8 7777 7574 435 63 0 0 chr6 151055377 151055440 -31359802 + (TG)n Simple_repeat Simple_repeat 2 64 0 10903 205 35 22 chr6 151055440 151057510 -31357732 - L1MC3 LINE L1 -211 7574 5455 5765 124 13 0 chr6 151057510 151058801 -31356441 + L1PA11 LINE L1 4865 6171 -3 10903 205 35 22 chr6 151058801 151059084 -31356158 - L1MC3 LINE L1 -2330 5455 5177 31 92 0 0 chr6 151059096 151059183 -31356059 + AT_rich Low_complexity Low_complexity 1 87 0 281 241 12 12 chr6 151059192 151059275 -31355967 - L1MC3 LINE L1 -1016 5130 5048 23 0 0 0 chr6 151059477 151059500 -31355742 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr6 151059821 151059844 -31355398 + (TAGA)n Simple_repeat Simple_repeat 2 24 0 285 303 0 46 chr6 151060820 151060929 -31354313 + MLT1-int LTR MaLR 775 878 -493 1027 276 95 49 chr6 151061237 151061723 -31353519 + MLT1G1 LTR MaLR 88 595 0 42265 35 23 0 chr6 151062313 151068324 -31346918 + L1PA2 LINE L1 5 6155 0 36 53 0 0 chr6 151070665 151070722 -31344520 + AT_rich Low_complexity Low_complexity 1 57 0 395 335 56 4 chr6 151071278 151071440 -31343802 - MIR SINE MIR -41 167 2 181 387 107 20 chr6 151071679 151071829 -31343413 - L2 LINE L2 -527 2787 2625 312 27 0 0 chr6 151072117 151072154 -31343088 + (TG)n Simple_repeat Simple_repeat 1 37 0 408 40 0 0 chr6 151072156 151072206 -31343036 + (GA)n Simple_repeat Simple_repeat 2 51 0 283 330 42 71 chr6 151072258 151072640 -31342602 - L2 LINE L2 -1081 2233 1863 315 377 34 7 chr6 151073539 151073685 -31341557 - MIR SINE MIR -111 151 2 896 250 72 47 chr6 151074633 151075062 -31340180 + MSTD LTR MaLR 1 426 -6 332 239 57 57 chr6 151075158 151075317 -31339925 + L1M4 LINE L1 3912 4070 -2076 * 8978 176 54 31 chr6 151075307 151076556 -31338686 - L1P LINE L1 -1616 4530 3218 2356 78 0 0 chr6 151076556 151076851 -31338391 - AluY SINE Alu -16 295 1 8978 176 54 31 chr6 151076851 151077578 -31337664 - L1P LINE L1 -2928 3218 2509 9972 152 35 14 chr6 151077578 151078256 -31336986 + Tigger1 DNA MER2_type 631 1294 -1124 1534 176 4 0 chr6 151078256 151078528 -31336714 + L1PA16 LINE L1 5891 6163 -3 9972 152 35 14 chr6 151078528 151079601 -31335641 + Tigger1 DNA MER2_type 1294 2418 0 342 276 60 8 chr6 151079605 151079739 -31335503 + L1M4 LINE L1 3029 3169 -2977 21 0 0 0 chr6 151081826 151081847 -31333395 + AT_rich Low_complexity Low_complexity 1 21 0 345 47 0 0 chr6 151081971 151082014 -31333228 + (TG)n Simple_repeat Simple_repeat 2 44 0 212 245 0 19 chr6 151083073 151083126 -31332116 + CT-rich Low_complexity Low_complexity 3 54 0 375 180 130 20 chr6 151083204 151083304 -31331938 - L1MA3 LINE L1 0 6305 6195 * 20248 175 40 13 chr6 151083291 151083608 -31331634 - L1 LINE L1 -1422 6143 5836 225 0 0 0 chr6 151083608 151083633 -31331609 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 20248 175 40 13 chr6 151083633 151089280 -31325962 - L1 LINE L1 -1729 5836 14 459 267 0 67 chr6 151089371 151089506 -31325736 - L2 LINE L2 -1 3312 3187 270 350 49 8 chr6 151089521 151089644 -31325598 + MER5A DNA MER1_type 59 186 -3 1237 201 142 12 chr6 151089698 151090021 -31325221 - MLT1A1 LTR MaLR 0 365 1 29 28 0 0 chr6 151090317 151090353 -31324889 + AT_rich Low_complexity Low_complexity 1 36 0 5750 99 19 27 chr6 151091211 151093036 -31322206 + L1PA14 LINE L1 4376 6158 -3 22 0 0 0 chr6 151094335 151094357 -31320885 + AT_rich Low_complexity Low_complexity 1 22 0 2265 66 26 17 chr6 151095056 151095358 -31319884 + AluY SINE Alu 3 307 -4 1308 239 87 56 chr6 151095374 151095528 -31319714 - L1ME2 LINE L1 -238 5860 5712 1229 216 4 0 chr6 151095528 151095796 -31319446 - L1MB7 LINE L1 -9 6175 5907 1308 239 87 56 chr6 151095796 151096543 -31318699 - L1ME2 LINE L1 -386 5712 4926 574 206 0 8 chr6 151096585 151096716 -31318526 + L1MB7 LINE L1 6046 6175 -9 298 230 48 24 chr6 151096721 151096847 -31318395 + L1ME2 LINE L1 5770 5898 -266 1582 224 63 45 chr6 151096851 151096986 -31318256 - L1ME2 LINE L1 -1162 4918 4787 723 64 27 0 chr6 151096986 151097096 -31318146 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 1582 224 63 45 chr6 151097096 151097459 -31317783 - L1ME2 LINE L1 -1293 4787 4406 1706 234 111 6 chr6 151097459 151097514 -31317728 - MLT2B1 LTR ERVL 0 520 472 468 77 0 0 chr6 151097514 151097579 -31317663 + (TG)n Simple_repeat Simple_repeat 2 66 0 1706 234 111 6 chr6 151097579 151097992 -31317250 - MLT2B1 LTR ERVL -48 472 3 1582 224 63 45 chr6 151097992 151098050 -31317192 - L1ME2 LINE L1 -1674 4406 4351 318 218 13 0 chr6 151098061 151098139 -31317103 + L1M4 LINE L1 5201 5279 -867 21 0 0 0 chr6 151098270 151098291 -31316951 + AT_rich Low_complexity Low_complexity 1 21 0 441 303 22 84 chr6 151098395 151098813 -31316429 - L1ME2 LINE L1 -4638 1623 1261 2477 69 0 0 chr6 151098813 151099116 -31316126 - AluSx SINE Alu -9 303 1 441 303 22 84 chr6 151099116 151099374 -31315868 - L1ME2 LINE L1 -5000 1261 989 300 355 62 12 chr6 151099383 151099625 -31315617 - L1ME2 LINE L1 -5149 921 668 2092 81 53 0 chr6 151100507 151100790 -31314452 - AluY SINE Alu -13 298 1 186 71 0 0 chr6 151100801 151100829 -31314413 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1946 147 27 15 chr6 151101262 151101595 -31313647 - MER1B DNA MER1_type 0 337 1 222 37 0 0 chr6 151101911 151101938 -31313304 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 1974 130 6 19 chr6 151101985 151102300 -31312942 - AluSq SINE Alu -2 311 1 222 214 0 36 chr6 151102350 151102406 -31312836 + CT-rich Low_complexity Low_complexity 5 58 0 1047 136 45 0 chr6 151102428 151102627 -31312615 + L1MA8 LINE L1 6082 6289 -2 221 175 0 0 chr6 151102740 151102780 -31312462 + L2 LINE L2 3274 3313 0 1030 264 90 22 chr6 151103253 151104200 -31311042 + L1ME2 LINE L1 5106 6137 -27 19900 175 18 31 chr6 151104298 151106607 -31308635 + L1MA3 LINE L1 16 2353 -5371 809 217 0 24 chr6 151106607 151106773 -31308469 - AluSg/x SINE Alu -15 297 136 19900 175 18 31 chr6 151106773 151111686 -31303556 + L1MA3 LINE L1 2353 7307 -417 1120 154 159 13 chr6 151111686 151111919 -31303323 - MSTA LTR MaLR -160 268 2 1543 234 72 24 chr6 151111919 151112504 -31302738 - L1ME LINE L1 -397 5769 5070 2850 0 0 0 chr6 151112504 151112808 -31302434 - AluYa5 SINE Alu -7 304 1 1543 234 72 24 chr6 151112808 151113175 -31302067 - L1ME LINE L1 -1096 5070 4722 4312 246 45 35 chr6 151114311 151115691 -31299551 + L1MC1 LINE L1 3523 4916 -1230 2375 131 28 14 chr6 151115692 151116051 -31299191 + THE1B LTR MaLR 1 364 0 3309 96 15 0 chr6 151116051 151116522 -31298720 + THE1B-int LTR MaLR 1 478 -1102 * 5181 111 6 3 chr6 151116521 151117239 -31298003 + THE1B-int LTR MaLR 861 1580 0 2154 120 51 23 chr6 151117239 151117590 -31297652 + THE1B LTR MaLR 1 361 -3 384 264 0 58 chr6 151117596 151117751 -31297491 + L1MC1 LINE L1 4932 5077 -1069 3199 178 16 29 chr6 151117753 151117923 -31297319 + L1MC1 LINE L1 5662 5833 -500 2379 74 3 26 chr6 151117923 151118233 -31297009 + AluSq SINE Alu 1 303 -10 3199 178 16 29 chr6 151118233 151118743 -31296499 + L1MC1 LINE L1 5833 6333 0 337 242 11 0 chr6 151118773 151118864 -31296378 + HAL1 LINE L1 116 207 -2300 434 285 115 24 chr6 151118887 151119140 -31296102 + HAL1 LINE L1 1048 1323 -1184 2103 126 52 3 chr6 151119153 151119517 -31295725 - L1MA1 LINE L1 0 6302 5921 4982 180 22 14 chr6 151119517 151120415 -31294827 - L1M1 LINE L1 -5301 2264 1360 23 0 0 0 chr6 151120691 151120714 -31294528 + AT_rich Low_complexity Low_complexity 1 23 0 2584 219 74 12 chr6 151120741 151121431 -31293811 - MER44D DNA MER2_type 0 605 1 204 382 32 6 chr6 151121628 151121785 -31293457 + L3 LINE CR1 1078 1238 -339 527 265 52 33 chr6 151121955 151122166 -31293076 + MER20 DNA MER1_type 1 215 -4 405 346 102 10 chr6 151122438 151122643 -31292599 + MIR SINE MIR 8 231 -31 226 160 20 0 chr6 151122682 151122732 -31292510 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 24 0 0 0 chr6 151124765 151124789 -31290453 + AT_rich Low_complexity Low_complexity 1 24 0 216 182 0 0 chr6 151125012 151125056 -31290186 + CT-rich Low_complexity Low_complexity 4 47 0 421 378 84 41 chr6 151125301 151126028 -31289214 - L2 LINE L2 -1 3271 2520 1728 236 25 48 chr6 151126156 151126631 -31288611 + MLT1C LTR MaLR 4 467 0 1678 237 60 87 chr6 151126955 151127625 -31287617 + MLT1E1 LTR MaLR 3 654 0 217 222 0 0 chr6 151127822 151127867 -31287375 + CT-rich Low_complexity Low_complexity 2 46 0 1289 136 41 18 chr6 151129143 151129363 -31285879 + L1MC/D LINE L1 5381 5605 -739 234 143 0 0 chr6 151129904 151129953 -31285289 + (TC)n Simple_repeat Simple_repeat 1 49 0 242 208 0 0 chr6 151130104 151130152 -31285090 - MLT1F LTR MaLR -459 83 36 42604 34 22 1 chr6 151131102 151137130 -31278112 + L1PA2 LINE L1 1 6153 -2 870 279 81 16 chr6 151137380 151137824 -31277418 - L1ME3A LINE L1 -30 6140 5668 696 262 56 30 chr6 151137841 151138143 -31277099 + L1ME LINE L1 5296 5605 -557 304 284 82 46 chr6 151138228 151138422 -31276820 - L1MDa LINE L1 -4619 1921 1721 1696 221 53 32 chr6 151138756 151139322 -31275920 - L1MB8 LINE L1 -1 6177 5600 1022 174 0 0 chr6 151139324 151139479 -31275763 - FRAM SINE Alu -17 159 5 754 237 0 0 chr6 151139479 151139635 -31275607 - L1MB8 LINE L1 -558 5608 5453 308 294 79 0 chr6 151139737 151139863 -31275379 + L1M4 LINE L1 3709 3844 -2302 2130 223 46 59 chr6 151140349 151140958 -31274284 - MER77 LTR ERV1 0 605 5 2020 168 24 24 chr6 151141172 151141595 -31273647 - L1MA7 LINE L1 -3 6288 5866 1222 176 18 0 chr6 151141596 151141818 -31273424 + L1MA4 LINE L1 5394 5619 -672 756 170 141 29 chr6 151141886 151141921 -31273321 + L1MA4 LINE L1 5598 5628 -663 402 21 0 0 chr6 151141921 151141968 -31273274 + (TA)n Simple_repeat Simple_repeat 2 48 0 756 170 141 29 chr6 151141968 151142138 -31273104 + L1MA4 LINE L1 5628 5822 -469 2738 188 27 4 chr6 151142433 151142991 -31272251 - L1MC1 LINE L1 -11 6322 5752 272 150 0 0 chr6 151142991 151143031 -31272211 - LOR1b LTR ERV1 -19 442 403 * 946 174 119 0 chr6 151143029 151143247 -31271995 - LOR1b LTR ERV1 -217 244 1 3322 141 14 17 chr6 151143259 151144123 -31271119 - LOR1b-int LTR ERV1 -1 8119 7168 370 161 0 0 chr6 151144123 151144185 -31271057 - MER49 LTR ERV1 -852 71 10 1111 188 43 5 chr6 151144185 151144392 -31270850 - LOR1b-int LTR ERV1 -1077 7043 6829 8675 113 30 4 chr6 151144453 151145829 -31269413 - LOR1a-int LTR ERV1 -6172 1948 536 2343 171 29 10 chr6 151145830 151146239 -31269003 - LOR1a-int LTR ERV1 -7702 418 2 2209 154 41 20 chr6 151146246 151146687 -31268555 + LTR7 LTR ERV1 1 450 0 1936 188 77 5 chr6 151146687 151147075 -31268167 - LOR1a LTR ERV1 -1 496 81 466 122 27 0 chr6 151147075 151147149 -31268093 - MER61B-int LTR ERV1 -5140 77 2 1506 180 34 34 chr6 151147153 151147448 -31267794 - MER61B LTR ERV1 -7 418 124 2150 176 8 3 chr6 151147470 151147861 -31267381 + L1MC/D LINE L1 5371 5763 -570 473 158 13 0 chr6 151147863 151147939 -31267303 + LOR1b LTR ERV1 1 77 -384 10811 115 31 18 chr6 151147950 151149634 -31265608 + MER61B-int LTR ERV1 3513 5217 0 1502 175 33 40 chr6 151149657 151149960 -31265282 + MER61B LTR ERV1 125 425 0 592 187 15 4 chr6 151149960 151150124 -31265118 - L1MC1 LINE L1 -775 5371 5208 22 0 0 0 chr6 151150564 151150586 -31264656 + AT_rich Low_complexity Low_complexity 1 22 0 2212 102 3 0 chr6 151150590 151150883 -31264359 + AluY SINE Alu 2 295 -16 21 36 0 0 chr6 151151078 151151106 -31264136 + AT_rich Low_complexity Low_complexity 1 28 0 457 299 37 30 chr6 151151497 151151768 -31263474 + L1MC/D LINE L1 5324 5596 -2212 3142 143 64 32 chr6 151151778 151152346 -31262896 - LTR48B LTR ERV1 -2 642 51 2200 97 0 23 chr6 151152346 151152656 -31262586 - AluY SINE Alu -7 304 2 3142 143 64 32 chr6 151152656 151152709 -31262533 - LTR48B LTR ERV1 -593 51 1 288 0 0 0 chr6 151153295 151153327 -31261915 + (CA)n Simple_repeat Simple_repeat 2 33 0 2209 149 59 19 chr6 151153354 151153777 -31261465 + L1MC1 LINE L1 5878 6317 -16 2003 146 0 0 chr6 151153942 151154236 -31261006 + AluSx SINE Alu 1 294 -18 639 133 23 8 chr6 151154253 151154381 -31260861 + GA-rich Low_complexity Low_complexity 3 132 0 447 310 88 19 chr6 151154665 151154881 -31260361 + MLT1I LTR MaLR 161 391 -18 354 323 64 41 chr6 151155173 151155393 -31259849 + HAL1 LINE L1 1410 1634 -873 1133 251 94 86 chr6 151156403 151157149 -31258093 - MER20B DNA MER1_type -1 782 31 226 336 36 0 chr6 151157260 151157370 -31257872 - L1ME LINE L1 -597 5565 5452 305 343 62 27 chr6 151157460 151157606 -31257636 + L1MC/D LINE L1 5699 5849 -1959 1990 132 40 32 chr6 151157682 151158052 -31257190 + THE1C LTR MaLR 2 374 -1 227 31 31 0 chr6 151158976 151159008 -31256234 + (TA)n Simple_repeat Simple_repeat 1 33 0 5777 153 30 8 chr6 151159300 151160537 -31254705 - L1MA4A LINE L1 -12 6291 5035 2335 170 13 4 chr6 151160561 151161026 -31254216 + L1 LINE L1 3554 4022 -2124 523 293 61 11 chr6 151161027 151161208 -31254034 - MIR SINE MIR -71 191 2 575 78 0 0 chr6 151161510 151161587 -31253655 + MADE1 DNA Mariner 1 77 -3 25 0 0 0 chr6 151165254 151165279 -31249963 + AT_rich Low_complexity Low_complexity 1 25 0 299 143 33 44 chr6 151166926 151167017 -31248225 + (TTATA)n Simple_repeat Simple_repeat 5 94 0 23 0 0 0 chr6 151167068 151167091 -31248151 + AT_rich Low_complexity Low_complexity 1 23 0 484 255 105 26 chr6 151168009 151169366 -31245876 + L1M4 LINE L1 3912 5415 -743 973 307 26 47 chr6 151169366 151169793 -31245449 - LTR16A LTR ERVL 0 450 33 1630 338 65 28 chr6 151170168 151171564 -31243678 - ERVL LTR ERVL -650 5114 3668 2003 181 33 28 chr6 151171577 151172123 -31243119 - MLT2A2 LTR ERVL 0 554 1 759 330 59 53 chr6 151172209 151172869 -31242373 - ERVL LTR ERVL -2210 3554 2891 468 262 48 12 chr6 151172992 151173160 -31242082 - ERVL LTR ERVL -3299 2465 2292 3625 152 38 50 chr6 151173585 151174158 -31241084 - MER50 LTR ERV1 0 734 171 2139 122 3 6 chr6 151174158 151174469 -31240773 - AluSx SINE Alu -2 310 1 3625 152 38 50 chr6 151174469 151174638 -31240604 - MER50 LTR ERV1 -563 171 1 21 0 0 0 chr6 151175353 151175374 -31239868 + AT_rich Low_complexity Low_complexity 1 21 0 422 105 26 35 chr6 151226540 151226654 -31188588 + (TA)n Simple_repeat Simple_repeat 2 114 0 426 264 77 0 chr6 151226663 151226818 -31188424 - Charlie8 DNA MER1_type -2170 247 81 315 244 41 8 chr6 151226918 151227041 -31188201 + L1M4 LINE L1 4720 4846 -1300 463 348 65 24 chr6 151227091 151227384 -31187858 + L2 LINE L2 2554 2858 -456 451 311 33 128 chr6 151227394 151227610 -31187632 - L2 LINE L2 -957 2357 2193 2189 201 17 23 chr6 151227610 151228137 -31187105 + L1MA7 LINE L1 5768 6291 0 451 311 33 128 chr6 151228137 151228309 -31186933 - L2 LINE L2 -1121 2193 2006 271 327 40 5 chr6 151228314 151228516 -31186726 + L1ME LINE L1 4126 4334 -1812 350 264 28 51 chr6 151228754 151228932 -31186310 + L1ME LINE L1 4511 4684 -1462 304 310 92 28 chr6 151229122 151229406 -31185836 + L1ME LINE L1 4976 5277 -869 290 336 0 0 chr6 151229698 151229805 -31185437 + L1ME LINE L1 5613 5719 -451 1170 198 4 34 chr6 151229823 151230061 -31185181 + AluJo SINE Alu 1 231 -81 3905 129 9 43 chr6 151230068 151230429 -31184813 + L1PA14 LINE L1 5487 5814 -347 1932 143 3 3 chr6 151230429 151230729 -31184513 + AluSx SINE Alu 13 312 0 3905 129 9 43 chr6 151230729 151231057 -31184185 + L1PA14 LINE L1 5814 6152 -9 238 310 40 0 chr6 151231061 151231161 -31184081 + L1ME LINE L1 5726 5829 -333 347 130 13 52 chr6 151231172 151231249 -31183993 - L1MA10 LINE L1 -105 6229 6156 1674 190 15 6 chr6 151231265 151231596 -31183646 + L1MD3 LINE L1 5618 5951 -408 678 231 45 87 chr6 151231640 151231698 -31183544 + L1MD3 LINE L1 6049 6108 -1887 351 113 0 0 chr6 151231698 151231751 -31183491 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 678 231 45 87 chr6 151231751 151232003 -31183239 + L1MD3 LINE L1 6108 7985 -10 1159 134 57 29 chr6 151232978 151233187 -31182055 + MER101 LTR ERV1 260 474 0 1622 156 12 117 chr6 151233187 151233597 -31181645 + MLT1B LTR MaLR 24 390 0 207 157 20 20 chr6 151233821 151233872 -31181370 + (TA)n Simple_repeat Simple_repeat 1 51 0 447 321 75 11 chr6 151234012 151234199 -31181043 - MIR SINE MIR -11 251 53 336 360 19 48 chr6 151234933 151235311 -31179931 - MERVL LTR ERVL -498 4987 4621 588 335 53 42 chr6 151235444 151235799 -31179443 - MERVL LTR ERVL -1299 4465 4107 469 352 64 13 chr6 151235900 151236136 -31179106 - MERVL LTR ERVL -1910 3854 3607 851 388 16 8 chr6 151236217 151236722 -31178520 - MERVL LTR ERVL -2234 3420 2912 801 310 36 20 chr6 151236763 151237223 -31178019 + MLT1G1 LTR MaLR 75 595 0 478 374 9 0 chr6 151237223 151237434 -31177808 - MERVL LTR ERVL -2089 2907 2695 24 32 0 0 chr6 151238130 151238161 -31177081 + AT_rich Low_complexity Low_complexity 1 31 0 510 58 43 0 chr6 151238573 151238642 -31176600 + THE1B LTR MaLR 1 72 -292 5412 109 7 4 chr6 151238642 151239400 -31175842 + THE1B-int LTR MaLR 821 1580 0 2087 115 75 35 chr6 151239402 151239750 -31175492 + THE1B LTR MaLR 3 364 0 25 0 0 0 chr6 151241377 151241402 -31173840 + AT_rich Low_complexity Low_complexity 1 25 0 333 284 114 40 chr6 151241570 151241746 -31173496 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chr6 151242208 151242232 -31173010 + AT_rich Low_complexity Low_complexity 1 24 0 1466 282 61 48 chr6 151242361 151242739 -31172503 + L1MEc LINE L1 215 587 -5809 2302 261 7 21 chr6 151242739 151243307 -31171935 - REP3 LTR ERV 0 562 3 1466 282 61 48 chr6 151243307 151243730 -31171512 + L1MEc LINE L1 587 1030 -5366 2020 143 44 49 chr6 151243730 151244095 -31171147 + THE1B LTR MaLR 1 363 -1 1466 282 61 48 chr6 151244095 151244164 -31171078 + L1MEc LINE L1 1030 1097 -5299 * 27226 137 23 61 chr6 151244149 151250554 -31164688 + L1PA7 LINE L1 6 6152 -2 247 231 161 42 chr6 151250673 151250816 -31164426 + L1MEc LINE L1 1114 1273 -4944 392 335 113 42 chr6 151251288 151251937 -31163305 + L2 LINE L2 2028 2769 -545 1480 253 34 29 chr6 151252332 151252779 -31162463 + L1ME2 LINE L1 5709 6157 -7 4187 198 44 10 chr6 151254243 151255183 -31160059 - L1MC2 LINE L1 0 6344 5373 1523 251 19 7 chr6 151255186 151255601 -31159641 + L1M4 LINE L1 3521 3940 -2206 2021 117 65 3 chr6 151255602 151255954 -31159288 + LOR1a LTR ERV1 2 375 -122 1789 129 47 78 chr6 151256377 151256764 -31158478 + THE1C LTR MaLR 1 375 0 8968 129 34 35 chr6 151256766 151258346 -31156896 + THE1C-int LTR MaLR 3 1580 0 1533 157 55 81 chr6 151258348 151258731 -31156511 + THE1C LTR MaLR 3 375 0 1743 219 22 71 chr6 151259240 151259871 -31155371 - L1MCb LINE L1 -5088 957 358 649 142 22 0 chr6 151259872 151260006 -31155236 - L1MCb LINE L1 -5148 897 761 546 281 94 33 chr6 151260018 151260317 -31154925 - L1MCb LINE L1 -6022 542 226 1665 232 32 53 chr6 151260339 151260904 -31154338 + LTR38 LTR ERV1 4 556 0 2814 219 21 91 chr6 151260904 151261799 -31153443 + LTR38-int LTR ERV1 1 833 -953 5026 324 61 65 chr6 151262210 151263443 -31151799 + LTR38-int LTR ERV1 475 1711 -5411 2025 186 73 2 chr6 151263443 151263841 -31151401 - MSTB LTR MaLR 0 426 1 5026 324 61 65 chr6 151263841 151265404 -31149838 + LTR38-int LTR ERV1 1711 3278 -3844 2813 3 0 0 chr6 151265404 151265707 -31149535 - AluY SINE Alu -8 303 1 5026 324 61 65 chr6 151265707 151268267 -31146975 + LTR38-int LTR ERV1 3278 5846 -1276 1496 197 3 36 chr6 151268267 151268571 -31146671 + AluJo SINE Alu 2 295 -17 5026 324 61 65 chr6 151268571 151268741 -31146501 + LTR38-int LTR ERV1 5846 6015 -1107 194 279 0 0 chr6 151268741 151268784 -31146458 - L3b LINE CR1 -179 1404 1362 5026 324 61 65 chr6 151268784 151269624 -31145618 + LTR38-int LTR ERV1 6015 6862 -260 711 229 28 6 chr6 151269819 151269998 -31145244 + LTR38 LTR ERV1 1 183 -373 222 170 57 19 chr6 151270125 151270178 -31145064 + L2 LINE L2 2651 2705 -609 1906 140 42 31 chr6 151270201 151270559 -31144683 - THE1B LTR MaLR 0 364 3 11755 91 8 0 chr6 151270561 151272128 -31143114 - THE1B-int LTR MaLR 0 1580 1 1845 145 61 47 chr6 151272128 151272487 -31142755 - THE1B LTR MaLR 0 364 1 369 256 74 16 chr6 151272487 151272608 -31142634 + L1M4 LINE L1 4552 4679 -1467 1846 221 22 80 chr6 151272608 151273196 -31142046 + MLT2B3 LTR ERVL 1 554 0 262 294 0 0 chr6 151273217 151273285 -31141957 + GA-rich Low_complexity Low_complexity 2 69 0 344 58 0 19 chr6 151273314 151273366 -31141876 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 1563 163 13 13 chr6 151273367 151273674 -31141568 + LTR8A LTR ERV1 270 576 -151 33533 50 2 2 chr6 151273677 151278089 -31137153 + L1PA3 LINE L1 1 4410 -1736 8234 34 1 1 chr6 151278189 151280017 -31135225 + L1PA3 LINE L1 4341 6152 -3 724 210 25 6 chr6 151280030 151280187 -31135055 + LTR8A LTR ERV1 568 727 0 234 0 0 0 chr6 151280306 151280332 -31134910 + (A)n Simple_repeat Simple_repeat 1 26 0 705 177 172 27 chr6 151280936 151281122 -31134120 - MER46A DNA MER2_type -5 231 19 29 28 0 0 chr6 151281140 151281176 -31134066 + AT_rich Low_complexity Low_complexity 1 36 0 283 327 96 0 chr6 151284583 151284687 -31130555 + MIR SINE MIR 48 161 -101 243 178 27 14 chr6 151285871 151285944 -31129298 + CT-rich Low_complexity Low_complexity 2 75 0 241 284 29 10 chr6 151286312 151286414 -31128828 + 7SK RNA RNA 19 122 -71 185 65 32 0 chr6 151286522 151286553 -31128689 + (TG)n Simple_repeat Simple_repeat 2 33 0 394 291 69 23 chr6 151287417 151287592 -31127650 - LTR33 LTR ERVL -306 215 33 232 178 27 0 chr6 151287599 151287672 -31127570 + (TA)n Simple_repeat Simple_repeat 1 75 0 274 344 109 21 chr6 151287719 151287911 -31127331 - L3 LINE CR1 -199 1378 1170 228 326 21 11 chr6 151288550 151288645 -31126597 + L3 LINE CR1 1450 1545 -32 1222 191 12 4 chr6 151289601 151289847 -31125395 + MER101 LTR ERV1 1 248 -226 23 33 0 0 chr6 151290271 151290301 -31124941 + AT_rich Low_complexity Low_complexity 1 30 0 297 332 57 21 chr6 151290788 151290981 -31124261 - L2 LINE L2 -2 3311 3112 423 238 88 62 chr6 151290981 151291141 -31124101 + L2 LINE L2 2614 2777 -537 526 252 86 31 chr6 151291141 151291553 -31123689 - MLT1F1 LTR MaLR 0 567 156 1594 143 93 4 chr6 151291721 151292000 -31123242 - LOR1b LTR ERV1 0 461 158 18919 31 1 0 chr6 151292003 151295074 -31120168 - L1PA2 LINE L1 0 6155 3083 20495 49 50 2 chr6 151295174 151297946 -31117296 - L1PA2 LINE L1 -3237 2909 7 643 136 34 0 chr6 151297947 151298065 -31117177 - LOR1a LTR ERV1 -326 171 50 642 325 59 35 chr6 151298141 151298482 -31116760 + L2 LINE L2 2817 3165 -148 1021 269 63 32 chr6 151298543 151298955 -31116287 - L1ME3A LINE L1 -43 6127 5703 208 274 160 9 chr6 151299702 151299808 -31115434 - L2 LINE L2 -976 2338 2217 635 180 98 44 chr6 151300007 151300190 -31115052 + L2 LINE L2 3118 3310 -3 318 252 75 0 chr6 151300245 151300352 -31114890 - L1ME3A LINE L1 -297 5873 5759 367 353 128 20 chr6 151300472 151300523 -31114719 - L2 LINE L2 -1384 1930 1886 964 258 42 70 chr6 151300523 151300923 -31114319 - MLT1B LTR MaLR 0 390 2 367 353 128 20 chr6 151300923 151301381 -31113861 - L2 LINE L2 -1428 1886 1366 240 264 47 62 chr6 151301836 151301965 -31113277 + L2 LINE L2 3117 3243 -70 183 204 185 19 chr6 151302120 151302174 -31113068 + MIR SINE MIR 82 144 -64 276 238 0 0 chr6 151303317 151303401 -31111841 + (TATG)n Simple_repeat Simple_repeat 2 85 0 1549 209 8 17 chr6 151304078 151304432 -31110810 + MLT1A1 LTR MaLR 1 351 -14 298 310 128 58 chr6 151305278 151305536 -31109706 - L2 LINE L2 -190 3082 2807 2490 171 63 13 chr6 151306491 151306954 -31108288 + MER66B LTR ERV1 1 486 0 26 0 0 0 chr6 151307180 151307206 -31108036 + AT_rich Low_complexity Low_complexity 1 26 0 185 81 0 54 chr6 151308749 151308786 -31106456 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr6 151309042 151309063 -31106179 + AT_rich Low_complexity Low_complexity 1 21 0 1998 117 7 42 chr6 151309426 151309733 -31105509 - AluSx SINE Alu -16 296 1 23 0 0 0 chr6 151309784 151309807 -31105435 + AT_rich Low_complexity Low_complexity 1 23 0 248 358 8 16 chr6 151309896 151310019 -31105223 + L3 LINE CR1 900 1021 -556 432 328 12 41 chr6 151310085 151310256 -31104986 + MIR SINE MIR 30 195 -67 5982 100 32 5 chr6 151311463 151312563 -31102679 + L1PA8 LINE L1 4958 6094 -78 1778 114 57 70 chr6 151312689 151312988 -31102254 + AluSx SINE Alu 1 295 -17 975 224 28 39 chr6 151313273 151313528 -31101714 + L1M4 LINE L1 4041 4292 -1854 651 253 56 5 chr6 151313530 151313728 -31101514 + L1M4 LINE L1 4521 4728 -1418 257 277 18 0 chr6 151313950 151314062 -31101180 - L1M4 LINE L1 -2936 3210 3097 405 265 167 60 chr6 151314323 151314557 -31100685 + MIR SINE MIR 2 260 -2 657 235 117 65 chr6 151315923 151316247 -31098995 + MER58B DNA MER1_type 1 341 0 228 260 0 0 chr6 151316985 151317035 -31098207 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 22 35 0 0 chr6 151317053 151317082 -31098160 + AT_rich Low_complexity Low_complexity 1 29 0 5457 75 1 3 chr6 151317855 151318578 -31096664 - L1PA8 LINE L1 -1 6171 5450 21 0 0 0 chr6 151318784 151318805 -31096437 + AT_rich Low_complexity Low_complexity 1 21 0 264 55 55 18 chr6 151319115 151319170 -31096072 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 21 89 0 0 chr6 151319297 151319353 -31095889 + AT_rich Low_complexity Low_complexity 1 56 0 238 294 0 0 chr6 151319835 151319903 -31095339 + T-rich Low_complexity Low_complexity 1 68 0 361 248 31 50 chr6 151319973 151320134 -31095108 - MER104 DNA Tc2 -15 165 8 587 271 119 23 chr6 151320210 151320428 -31094814 + MIR SINE MIR 3 241 -21 1619 170 24 10 chr6 151321080 151321374 -31093868 - AluSx SINE Alu -14 298 1 565 283 16 22 chr6 151321427 151321703 -31093539 - L1 LINE L1 -2622 3524 3253 3160 175 45 6 chr6 151321788 151322415 -31092827 - L1PB4 LINE L1 -168 6639 5989 4677 138 13 7 chr6 151322546 151323715 -31091527 - L1PA15 LINE L1 -6 6159 4936 4693 163 14 19 chr6 151323715 151324521 -31090721 - MER52A LTR ERV1 0 1755 954 6751 239 43 12 chr6 151324521 151327525 -31087717 - L1PB4 LINE L1 -2841 3956 851 457 143 26 0 chr6 151327576 151327653 -31087589 + MSTA LTR MaLR 1 79 -349 2190 169 45 5 chr6 151327813 151328210 -31087032 + MSTA LTR MaLR 16 428 0 3348 215 75 22 chr6 151328213 151328942 -31086300 - L1PB4 LINE L1 -6019 768 1 22 0 0 0 chr6 151329291 151329313 -31085929 + AT_rich Low_complexity Low_complexity 1 22 0 248 288 30 0 chr6 151329370 151329436 -31085806 + L2 LINE L2 2444 2511 -803 329 286 60 55 chr6 151329566 151329748 -31085494 - L1MEd LINE L1 -5041 1078 896 29 28 0 0 chr6 151329753 151329789 -31085453 + AT_rich Low_complexity Low_complexity 1 36 0 2141 256 75 24 chr6 151329901 151330288 -31084954 - L1ME1 LINE L1 -26 6140 5774 2277 201 22 4 chr6 151330288 151330745 -31084497 - MLT1C LTR MaLR -2 465 1 2141 256 75 24 chr6 151330745 151331141 -31084101 - L1ME1 LINE L1 -392 5774 5317 328 221 39 0 chr6 151331263 151331340 -31083902 - L1ME1 LINE L1 -877 5269 5190 538 168 0 11 chr6 151331360 151331455 -31083787 + MLT1C LTR MaLR 374 467 0 1071 196 48 0 chr6 151331521 151331751 -31083491 - L1PB4 LINE L1 -3 6153 5913 1685 145 34 30 chr6 151331754 151331947 -31083295 - AluSx SINE Alu -14 298 102 2143 150 8 32 chr6 151331947 151332320 -31082922 + THE1B LTR MaLR 1 364 0 1685 145 34 30 chr6 151332320 151332423 -31082819 - AluSx SINE Alu -210 102 1 3639 161 25 11 chr6 151332423 151333254 -31081988 - L1PB4 LINE L1 -247 5909 5069 269 261 67 8 chr6 151333253 151333372 -31081870 - L1MDa LINE L1 -3212 3328 3203 * 434 248 0 16 chr6 151333392 151333517 -31081725 - MER33 DNA MER1_type -196 128 6 675 243 20 0 chr6 151333558 151333710 -31081532 + MER47A DNA MER2_type 1 155 -211 864 242 62 4 chr6 151333715 151333975 -31081267 - L1MDa LINE L1 -3221 3319 3045 332 244 89 94 chr6 151334009 151334052 -31081190 - L1MDa LINE L1 -4614 1926 1884 2416 36 4 0 chr6 151334052 151334333 -31080909 - AluY SINE Alu -6 305 24 332 244 89 94 chr6 151334333 151334469 -31080773 - L1MDa LINE L1 -4656 1884 1748 237 173 0 19 chr6 151334755 151334807 -31080435 + A-rich Low_complexity Low_complexity 3 53 0 2328 86 7 0 chr6 151335254 151335557 -31079685 + AluSp SINE Alu 1 305 -8 269 365 25 15 chr6 151336104 151336301 -31078941 - HERV16 LTR ERVL -4682 314 116 821 294 62 50 chr6 151336394 151336494 -31078748 - LTR16B LTR ERVL -12 452 355 2229 149 65 54 chr6 151336494 151336998 -31078244 + MER67D LTR ERV1 1 510 -4 821 294 62 50 chr6 151336998 151337318 -31077924 - LTR16B LTR ERVL -109 355 27 504 131 0 24 chr6 151337508 151337592 -31077650 + LTR24B LTR ERV1 4 85 -491 675 274 76 34 chr6 151337645 151337999 -31077243 + LTR24B LTR ERV1 207 575 -1 4316 158 14 8 chr6 151338068 151338807 -31076435 + Tigger2 DNA MER2_type 2 744 -1974 1432 128 58 0 chr6 151338873 151339115 -31076127 + Tigger2 DNA MER2_type 2461 2716 -2 1772 170 47 16 chr6 151339123 151339487 -31075755 + THE1C LTR MaLR 1 375 0 222 91 0 0 chr6 151340457 151340490 -31074752 + (CA)n Simple_repeat Simple_repeat 1 33 0 257 274 164 7 chr6 151340550 151340696 -31074546 + L1MC/D LINE L1 4080 4248 -1898 2040 92 7 11 chr6 151340751 151341073 -31074169 + AluSg SINE Alu 1 321 0 21 71 0 0 chr6 151341166 151341208 -31074034 + AT_rich Low_complexity Low_complexity 1 42 0 655 300 62 76 chr6 151341322 151341952 -31073290 + L1MC/D LINE L1 4613 5233 -913 1163 276 31 51 chr6 151341964 151342536 -31072706 + L1MC/D LINE L1 5261 5821 -1987 2147 205 42 2 chr6 151342541 151342975 -31072267 - LOR1b LTR ERV1 -10 451 1 375 353 19 6 chr6 151343050 151343206 -31072036 - MIR SINE MIR -56 206 49 2425 118 0 11 chr6 151343420 151343786 -31071456 + THE1B LTR MaLR 3 364 0 262 113 16 16 chr6 151345595 151345657 -31069585 + (TTTTA)n Simple_repeat Simple_repeat 1 62 0 6781 26 1 0 chr6 151345657 151346454 -31068788 - L1PA3 LINE L1 -3 6152 5355 1872 151 54 9 chr6 151346568 151346918 -31068324 - MER47A DNA MER2_type 0 366 1 2058 109 0 0 chr6 151349258 151349534 -31065708 - AluSc SINE Alu -33 276 1 319 210 25 12 chr6 151351308 151351389 -31063853 - MIR SINE MIR -107 155 74 282 272 37 0 chr6 151351760 151351841 -31063401 - MIR3 SINE MIR -28 180 97 206 200 125 12 chr6 151352796 151352876 -31062366 + MER5C DNA MER1_type 1 89 -235 180 77 0 0 chr6 151353697 151353723 -31061519 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 2200 240 57 12 chr6 151354724 151355407 -31059835 - L1M4 LINE L1 -1009 5137 4424 11340 190 26 23 chr6 151356130 151358359 -31056883 + L1M2 LINE L1 715 2955 -3893 1546 107 65 0 chr6 151358359 151358575 -31056667 + MER30 DNA MER1_type 1 230 0 11340 190 26 23 chr6 151358575 151359870 -31055372 + L1M2 LINE L1 2955 4245 -2603 748 140 0 0 chr6 151409870 151409984 -31005258 - THE1-int LTR MaLR -504 1076 963 702 202 8 0 chr6 151409984 151410108 -31005134 + MER52-int LTR ERV1 1282 1406 -5685 677 101 0 0 chr6 151410160 151410259 -31004983 - AluSg/x SINE Alu -9 301 203 3493 177 35 60 chr6 151410259 151410369 -31004873 + L1MB8 LINE L1 5372 5483 -695 1797 203 37 8 chr6 151410369 151410724 -31004518 + MLT1A1 LTR MaLR 1 365 0 3493 177 35 60 chr6 151410724 151411436 -31003806 + L1MB8 LINE L1 5483 6174 -4 2055 129 0 0 chr6 151411641 151411936 -31003306 + AluSx SINE Alu 1 295 -17 569 143 20 0 chr6 151412730 151412828 -31002414 + AluJ/FLAM SINE Alu 1 100 -212 30 59 0 0 chr6 151413518 151413569 -31001673 + AT_rich Low_complexity Low_complexity 1 51 0 25 31 0 0 chr6 151413734 151413766 -31001476 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr6 151414227 151414265 -31000977 + AT_rich Low_complexity Low_complexity 1 38 0 444 294 49 22 chr6 151415478 151415662 -30999580 - MIR SINE MIR -30 232 44 253 431 10 0 chr6 151415643 151415745 -30999497 + MER91A DNA MER1_type 67 169 -27 * 2314 121 8 27 chr6 151416548 151416919 -30998323 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr6 151418039 151418065 -30997177 + AT_rich Low_complexity Low_complexity 1 26 0 618 337 83 23 chr6 151419569 151419967 -30995275 - LTR16A LTR ERVL -6 444 23 432 342 97 4 chr6 151420262 151420499 -30994743 - MIR SINE MIR 0 262 4 1788 289 66 26 chr6 151420804 151421561 -30993681 + L1MEc LINE L1 35 821 -5575 4115 162 16 3 chr6 151421570 151422260 -30992982 + Tigger1 DNA MER2_type 7 705 -1713 2282 178 45 72 chr6 151422260 151422891 -30992351 + LTR38B LTR ERV1 1 541 0 9096 128 29 33 chr6 151422891 151424416 -30990826 + Tigger1 DNA MER2_type 702 2221 -197 523 222 89 15 chr6 151424416 151424551 -30990691 - MER58A DNA MER1_type 0 146 2 439 293 85 14 chr6 151424598 151424881 -30990361 + L1MEc LINE L1 1075 1377 -5019 325 339 56 21 chr6 151425070 151425274 -30989968 - MIR SINE MIR -30 232 22 345 311 37 7 chr6 151425529 151425664 -30989578 - MIR3 SINE MIR 0 208 70 225 234 0 16 chr6 151426135 151426199 -30989043 - L1MCa LINE L1 -4358 1857 1795 268 292 83 21 chr6 151426218 151426314 -30988928 + L2 LINE L2 3196 3297 -16 8119 162 25 52 chr6 151426393 151426945 -30988297 - L1MA9 LINE L1 -2 6310 5745 216 0 0 0 chr6 151426945 151426969 -30988273 + (TG)n Simple_repeat Simple_repeat 1 24 0 8119 162 25 52 chr6 151426969 151427634 -30987608 - L1MA9 LINE L1 -567 5745 5064 195 42 0 0 chr6 151427634 151427658 -30987584 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8119 162 25 52 chr6 151427658 151428657 -30986585 - L1MA9 LINE L1 -1248 5064 4165 1972 136 141 21 chr6 151428657 151429039 -30986203 + MSTA LTR MaLR 1 428 0 8119 162 25 52 chr6 151429039 151429640 -30985602 - L1MA9 LINE L1 -2147 4165 3550 219 255 39 0 chr6 151429882 151429933 -30985309 + L2 LINE L2 3244 3296 -17 259 310 92 21 chr6 151430501 151430643 -30984599 - MIR SINE MIR -76 186 35 334 257 11 106 chr6 151431641 151431820 -30983422 + MLT1H-int LTR MaLR 1023 1184 -187 306 256 139 0 chr6 151432011 151432097 -30983145 + MLT1H LTR MaLR 58 155 -394 210 289 66 0 chr6 151432986 151433062 -30982180 + L2 LINE L2 3196 3276 -37 198 0 0 0 chr6 151433545 151433567 -30981675 + (GCTG)n Simple_repeat Simple_repeat 2 23 0 13422 27 2 0 chr6 151436178 151438548 -30976694 - L1PA3 LINE L1 0 6155 3783 199 294 20 0 chr6 151439051 151439102 -30976140 - L2 LINE L2 -5 3267 3216 475 274 37 7 chr6 151439260 151439395 -30975847 - MER97c DNA MER1_type? -935 155 17 1082 243 18 4 chr6 151439413 151439689 -30975553 - L1MCa LINE L1 -5539 857 578 491 261 134 40 chr6 151440025 151440278 -30974964 - L1MCa LINE L1 -5834 562 286 339 290 83 47 chr6 151440525 151440958 -30974284 + L1 LINE L1 2781 3244 -2902 2977 259 55 49 chr6 151440971 151442187 -30973055 + L1MEc LINE L1 1961 3252 -2963 2198 97 3 3 chr6 151442187 151442486 -30972756 - AluSg SINE Alu -11 299 1 2977 259 55 49 chr6 151442486 151443135 -30972107 + L1MEc LINE L1 3252 3895 -2320 262 262 155 0 chr6 151443251 151443354 -30971888 + L1MEc LINE L1 4129 4247 -1968 1327 238 102 47 chr6 151443369 151443486 -30971756 + L1MEc LINE L1 4209 4318 -1897 1771 184 0 0 chr6 151443486 151443774 -30971468 + AluJo SINE Alu 1 288 -24 1327 238 102 47 chr6 151443774 151443968 -30971274 + L1MEc LINE L1 4318 4500 -1715 2198 99 3 0 chr6 151443968 151444262 -30970980 - AluSx SINE Alu -12 300 6 1327 238 102 47 chr6 151444262 151444654 -30970588 + L1MEc LINE L1 4500 4952 -1263 1447 162 103 0 chr6 151445464 151445735 -30969507 + AluJo SINE Alu 14 312 0 855 266 46 35 chr6 151446036 151446295 -30968947 + MIR SINE MIR 1 262 0 399 280 180 13 chr6 151446452 151446602 -30968640 + MER5B DNA MER1_type 1 175 -3 199 314 182 0 chr6 151448976 151449097 -30966145 + L2 LINE L2 2894 3036 -236 516 282 163 42 chr6 151449203 151449632 -30965610 - L2 LINE L2 -4 3309 2829 276 370 79 20 chr6 151449753 151449956 -30965286 + L2 LINE L2 1686 1900 -1414 605 220 163 18 chr6 151450085 151450385 -30964857 - L1MC/D LINE L1 -743 5386 5133 521 223 64 41 chr6 151450447 151450699 -30964543 - L1MEd LINE L1 -4865 1254 1010 965 195 81 106 chr6 151450987 151451346 -30963896 + Charlie2b DNA MER1_type 49 398 -2464 1753 97 4 0 chr6 151451384 151451612 -30963630 + AluSp SINE Alu 71 299 -14 515 263 237 0 chr6 151451961 151452185 -30963057 + Charlie2b DNA MER1_type 394 670 -2112 1018 245 122 80 chr6 151452267 151452435 -30962807 + Charlie2a DNA MER1_type 1511 1670 -1192 2171 107 3 0 chr6 151452435 151452724 -30962518 + AluSq SINE Alu 1 290 -23 186 43 0 0 chr6 151452728 151452751 -30962491 + (GAA)n Simple_repeat Simple_repeat 2 24 0 1018 245 122 80 chr6 151452751 151453255 -30961987 + Charlie2a DNA MER1_type 1672 2217 -645 463 217 212 20 chr6 151453258 151453461 -30961781 + Charlie2a DNA MER1_type 2566 2807 -55 353 315 24 31 chr6 151453877 151454004 -30961238 + L2 LINE L2 3187 3312 -1 4416 185 90 19 chr6 151454491 151455520 -30959722 - L1MD2 LINE L1 0 6359 5257 271 310 135 21 chr6 151455922 151456203 -30959039 + L1ME LINE L1 5550 5862 -259 383 370 79 61 chr6 151456267 151456708 -30958534 + L2 LINE L2 2816 3264 -8 2074 89 11 0 chr6 151457583 151457853 -30957389 + AluSg SINE Alu 15 287 -23 22 35 0 0 chr6 151458486 151458515 -30956727 + AT_rich Low_complexity Low_complexity 1 29 0 371 360 109 5 chr6 151458984 151459195 -30956047 + MIR SINE MIR 29 261 -1 1012 252 106 16 chr6 151459217 151459641 -30955601 - L1MEc LINE L1 -4042 2354 1893 32 43 0 0 chr6 151459659 151459705 -30955537 + AT_rich Low_complexity Low_complexity 1 46 0 1837 158 0 14 chr6 151459761 151460052 -30955190 + AluSx SINE Alu 1 287 -25 1525 305 63 37 chr6 151460063 151460162 -30955080 - L1MEc LINE L1 -5242 1154 1059 2127 106 0 3 chr6 151460162 151460496 -30954746 - AluSc SINE Alu 0 333 1 1525 305 63 37 chr6 151460496 151461478 -30953764 - L1MEc LINE L1 -5337 1059 39 220 344 196 24 chr6 151463258 151463711 -30951531 - L2 LINE L2 -2058 1256 726 703 295 57 79 chr6 151463755 151464159 -30951083 - MLT1J LTR MaLR -34 477 83 221 317 93 38 chr6 151464232 151464415 -30950827 - L2 LINE L2 -2907 407 215 367 196 63 63 chr6 151464459 151464648 -30950594 - Charlie7 DNA MER1_type -5 2607 2419 443 255 78 43 chr6 151465513 151465654 -30949588 - L2 LINE L2 -1 3312 3167 321 404 68 4 chr6 151465840 151466075 -30949167 + L1MC/D LINE L1 5420 5669 -2139 21 57 0 0 chr6 151466815 151466850 -30948392 + AT_rich Low_complexity Low_complexity 1 35 0 1773 138 0 45 chr6 151467298 151467609 -30947633 - AluSx SINE Alu -15 297 1 2190 84 0 11 chr6 151469420 151469752 -30945490 - AluY SINE Alu 0 329 1 27 0 0 0 chr6 151470373 151470400 -30944842 + AT_rich Low_complexity Low_complexity 1 27 0 241 156 233 0 chr6 151471200 151471290 -30943952 - Charlie5 DNA MER1_type 0 2619 2509 1729 151 33 16 chr6 151471306 151471611 -30943631 - AluJb SINE Alu -2 310 1 2219 110 0 0 chr6 151471784 151472076 -30943166 - AluSq SINE Alu -19 294 3 1093 281 60 42 chr6 151472395 151472697 -30942545 - MER20B DNA MER1_type -294 489 173 2058 115 3 10 chr6 151472697 151472992 -30942250 - AluSc SINE Alu -16 293 1 1093 281 60 42 chr6 151472992 151473169 -30942073 - MER20B DNA MER1_type -610 173 1 202 186 34 51 chr6 151473360 151473419 -30941823 - L2 LINE L2 -33 3239 3182 844 88 9 0 chr6 151474085 151474199 -30941043 - AluY SINE Alu -143 168 54 3082 182 43 7 chr6 151474734 151475316 -30939926 + MSTB-int LTR MaLR 1048 1650 -1 1934 183 76 0 chr6 151475326 151475719 -30939523 + MSTB LTR MaLR 4 426 0 22 0 0 0 chr6 151476539 151476561 -30938681 + AT_rich Low_complexity Low_complexity 1 22 0 205 237 34 34 chr6 151477183 151477242 -30938000 - MIR SINE MIR -69 139 81 653 191 228 44 chr6 151477248 151477520 -30937722 - MER5C DNA MER1_type 0 324 3 649 286 120 13 chr6 151477954 151478188 -30937054 + MIR SINE MIR 1 259 -3 1244 250 64 85 chr6 151478647 151479291 -30935951 + L1ME2 LINE L1 1237 1866 -4530 1094 281 60 29 chr6 151479339 151479862 -30935380 + L1ME2 LINE L1 2154 2649 -3566 1447 233 78 12 chr6 151479889 151480310 -30934932 + L1ME2 LINE L1 5547 5995 -238 2839 224 151 30 chr6 151480476 151481555 -30933687 + L1MC4 LINE L1 6374 7583 -459 369 212 104 5 chr6 151481599 151481771 -30933471 + L1MC4 LINE L1 7690 7902 -140 207 0 0 0 chr6 151481778 151481801 -30933441 + (TA)n Simple_repeat Simple_repeat 1 23 0 2270 88 0 0 chr6 151481822 151482116 -30933126 - AluY SINE Alu -17 294 1 210 71 0 0 chr6 151482139 151482167 -30933075 + (TA)n Simple_repeat Simple_repeat 1 28 0 241 301 21 0 chr6 151482189 151482282 -30932960 + L1MC4 LINE L1 7929 8023 -19 1891 251 151 82 chr6 151482880 151483815 -30931427 - L2 LINE L2 -341 2973 1913 230 114 0 0 chr6 151483815 151483850 -30931392 - MADE1 DNA Mariner -45 35 1 1891 251 151 82 chr6 151483850 151484020 -30931222 - L2 LINE L2 -1401 1913 1756 370 336 94 13 chr6 151484646 151484795 -30930447 - L3b LINE CR1 -14 1569 1409 285 304 78 29 chr6 151484950 151485052 -30930190 + MIR SINE MIR 45 151 -57 232 235 0 20 chr6 151485160 151485211 -30930031 + L2 LINE L2 3182 3231 -41 220 333 129 0 chr6 151486557 151486650 -30928592 - L2 LINE L2 -17 3296 3192 452 291 245 32 chr6 151486896 151487491 -30927751 - L2 LINE L2 -397 2917 2196 277 264 97 39 chr6 151487653 151487808 -30927434 - Charlie8 DNA MER1_type -2168 249 86 280 356 20 50 chr6 151487909 151488111 -30927131 - L2 LINE L2 -1244 2070 1875 1757 141 30 16 chr6 151488588 151488892 -30926350 - AluSx SINE Alu -4 308 1 1995 109 74 0 chr6 151488909 151489193 -30926049 - AluSg SINE Alu -2 308 4 519 295 38 38 chr6 151489217 151489400 -30925842 - MER5A DNA MER1_type -5 184 2 227 254 99 0 chr6 151489543 151489614 -30925628 - MIR SINE MIR -89 173 96 2279 71 0 10 chr6 151490443 151490740 -30924502 - AluY SINE Alu -17 294 1 537 288 73 56 chr6 151491354 151491404 -30923838 - L1M4 LINE L1 -2210 3936 3888 903 239 67 5 chr6 151491404 151491613 -30923629 - MER58A DNA MER1_type 0 224 3 537 288 73 56 chr6 151491613 151491902 -30923340 - L1M4 LINE L1 -2258 3888 3591 1501 167 133 0 chr6 151492797 151493120 -30922122 + MER47A DNA MER2_type 1 366 0 348 244 0 0 chr6 151493186 151493264 -30921978 - L1MC4 LINE L1 -2 8040 7963 243 0 0 0 chr6 151493386 151493413 -30921829 + (TG)n Simple_repeat Simple_repeat 2 28 0 2128 224 155 23 chr6 151493516 151494328 -30920914 - L1MC4 LINE L1 -131 7911 6993 3638 139 45 3 chr6 151494332 151494909 -30920333 + ERVL LTR ERVL 2481 3081 -2683 3177 265 124 24 chr6 151494909 151497255 -30917987 - L1MEc LINE L1 -1432 4648 2047 271 314 144 23 chr6 151497276 151497706 -30917536 - L1MEc LINE L1 -5244 826 345 267 323 84 19 chr6 151497712 151497867 -30917375 - L1MEc LINE L1 -5846 224 60 2190 64 0 74 chr6 151498478 151498789 -30916453 + AluY SINE Alu 3 290 -21 453 36 0 0 chr6 151498803 151498858 -30916384 + (TG)n Simple_repeat Simple_repeat 2 56 0 26 30 0 0 chr6 151498943 151498976 -30916266 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr6 151499438 151499470 -30915772 + AT_rich Low_complexity Low_complexity 1 32 0 24 77 0 0 chr6 151500052 151500104 -30915138 + AT_rich Low_complexity Low_complexity 1 52 0 249 286 54 41 chr6 151500818 151500965 -30914277 + MIR SINE MIR 101 249 -13 292 256 13 0 chr6 151501251 151501329 -30913913 - MER116 DNA Mariner -1 79 1 27 49 0 0 chr6 151501908 151501949 -30913293 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr6 151502280 151502303 -30912939 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr6 151502837 151502861 -30912381 + AT_rich Low_complexity Low_complexity 1 24 0 727 235 107 16 chr6 151503027 151503270 -30911972 + L1MC4a LINE L1 5648 5912 -1896 1954 102 67 3 chr6 151505424 151505707 -30909535 - AluSc SINE Alu -8 301 1 245 358 58 0 chr6 151505979 151506099 -30909143 - HAL1 LINE L1 -2377 130 4 483 320 51 0 chr6 151506100 151506275 -30908967 + HAL1 LINE L1 1580 1763 -744 2610 232 30 62 chr6 151506716 151507666 -30907576 + L1MC1 LINE L1 4111 5029 -1117 6009 175 101 15 chr6 151507666 151508485 -30906757 + L1MA4 LINE L1 1 749 -5145 2085 104 10 16 chr6 151508485 151508792 -30906450 + AluSx SINE Alu 1 305 -7 6009 175 101 15 chr6 151508792 151509641 -30905601 + L1MA4 LINE L1 749 1828 -4066 1592 113 12 86 chr6 151509698 151510024 -30905218 + L1MA4 LINE L1 4320 4621 -1707 4626 173 67 21 chr6 151510402 151512004 -30903238 + L1MA4 LINE L1 4639 6303 -223 4175 185 27 6 chr6 151511988 151512167 -30903075 + L1MC1 LINE L1 5010 5184 -1149 * 1894 81 0 8 chr6 151512167 151512413 -30902829 + AluY SINE Alu 55 298 -13 4175 185 27 6 chr6 151512413 151513263 -30901979 + L1MC1 LINE L1 5184 6058 -275 1697 138 197 11 chr6 151513264 151513625 -30901617 - MSTA LTR MaLR 0 428 1 7509 156 28 34 chr6 151513625 151515064 -30900178 - MSTA-int LTR MaLR 0 1580 151 895 132 255 19 chr6 151515066 151515278 -30899964 - MSTA LTR MaLR -161 267 6 1519 167 33 0 chr6 151515278 151515553 -30899689 + L1MC1 LINE L1 6050 6333 0 2420 61 0 10 chr6 151515840 151516136 -30899106 + AluY SINE Alu 1 293 -18 180 321 0 0 chr6 151516139 151516195 -30899047 + MIR SINE MIR 175 230 -32 221 176 59 0 chr6 151518029 151518080 -30897162 - L2 LINE L2 -4 3268 3215 613 199 210 6 chr6 151520486 151520662 -30894580 + MER58A DNA MER1_type 1 212 -12 292 275 156 0 chr6 151521147 151521256 -30893986 + MIR SINE MIR 127 252 -10 454 199 106 50 chr6 151521481 151521622 -30893620 - L2 LINE L2 0 3313 3165 489 207 108 0 chr6 151521653 151521764 -30893478 + MER5A DNA MER1_type 59 181 -8 361 177 83 31 chr6 151521826 151521922 -30893320 + MER5A DNA MER1_type 5 105 -84 * 1089 269 40 68 chr6 151521913 151522355 -30892887 - L2 LINE L2 -163 3150 2625 1606 154 6 61 chr6 151522355 151522667 -30892575 + AluSx SINE Alu 1 295 -17 1089 269 40 68 chr6 151522667 151522895 -30892347 - L2 LINE L2 -688 2625 2392 755 225 81 0 chr6 151523480 151523653 -30891589 - MIR SINE MIR -1 261 75 599 227 68 6 chr6 151524678 151524841 -30890401 + MLT1B LTR MaLR 1 173 -217 180 306 64 70 chr6 151525995 151526152 -30889090 + MIR3 SINE MIR 37 192 -16 487 266 145 0 chr6 151526457 151526664 -30888578 + L1M4 LINE L1 2355 2591 -3555 234 151 0 38 chr6 151527132 151527185 -30888057 + (TA)n Simple_repeat Simple_repeat 2 52 0 186 337 74 11 chr6 151527431 151527526 -30887716 - L2 LINE L2 -51 3221 3121 1715 157 23 13 chr6 151527909 151528197 -30887045 - MLT1A1 LTR MaLR 0 365 81 6266 102 16 13 chr6 151528197 151530069 -30885173 - L1PA11 LINE L1 -1 6173 4303 * 10838 70 6 7 chr6 151530065 151532303 -30882939 - L1PA6 LINE L1 -5 6149 3911 1715 157 23 13 chr6 151530069 151532317 -30882925 - MLT1A1 LTR MaLR -284 81 63 1582 120 4 0 chr6 151532317 151532583 -30882659 + L1P LINE L1 3655 3921 -2225 412 98 0 0 chr6 151532583 151532644 -30882598 + L1P LINE L1 4256 4316 -1830 2074 125 0 3 chr6 151532644 151532932 -30882310 + AluSx SINE Alu 3 289 -23 324 130 0 0 chr6 151532943 151532989 -30882253 + L1P3 LINE L1 10 55 -6406 3405 194 28 14 chr6 151532999 151533715 -30881527 + L1P3 LINE L1 485 1210 -5251 2951 70 58 26 chr6 151533835 151534265 -30880977 - MLT2A1 LTR ERVL 0 444 1 579 296 31 6 chr6 151534355 151534517 -30880725 - MIR3 SINE MIR -8 200 35 255 198 198 59 chr6 151535106 151535207 -30880035 + Charlie4a DNA MER1_type 2 116 -392 631 100 18 9 chr6 151535209 151535319 -30879923 + (TTCCC)n Simple_repeat Simple_repeat 1 111 0 2069 118 4 0 chr6 151535320 151535600 -30879642 - AluSp SINE Alu -32 281 1 1079 192 40 20 chr6 151535601 151535897 -30879345 + Charlie4a DNA MER1_type 100 401 -107 1457 208 83 59 chr6 151535897 151536388 -30878854 + MLT1D LTR MaLR 3 505 0 294 111 222 0 chr6 151536391 151536463 -30878779 + Charlie4a DNA MER1_type 406 493 -15 1974 144 0 0 chr6 151538073 151538384 -30876858 - AluSx SINE Alu 0 311 1 835 282 83 22 chr6 151538552 151538942 -30876300 - MLT1J2 LTR MaLR -23 423 18 286 328 104 20 chr6 151539719 151539920 -30875322 - MIR SINE MIR -22 240 23 274 180 16 107 chr6 151540122 151540174 -30875068 - L1ME4a LINE L1 -1 6120 6084 2316 118 0 0 chr6 151540174 151540487 -30874755 + AluSq SINE Alu 1 313 0 274 180 16 107 chr6 151540487 151540556 -30874686 - L1ME4a LINE L1 -37 6084 6010 242 319 11 22 chr6 151541437 151541528 -30873714 + MIR SINE MIR 63 152 -110 290 304 234 0 chr6 151542448 151542606 -30872636 + MIR SINE MIR 20 214 -48 1394 136 0 0 chr6 151542615 151542806 -30872436 + AluSx SINE Alu 5 195 -117 1808 84 4 0 chr6 151544792 151545019 -30870223 + AluSc SINE Alu 69 296 -13 212 376 56 37 chr6 151545043 151545205 -30870037 - MIR3 SINE MIR -28 180 16 201 288 63 18 chr6 151545845 151545956 -30869286 + L2 LINE L2 2245 2360 -954 239 250 0 16 chr6 151545975 151546039 -30869203 + MLT1F1 LTR MaLR 45 107 -460 2727 184 19 28 chr6 151546040 151546659 -30868583 + L1MC3 LINE L1 7172 7785 0 976 196 0 6 chr6 151548034 151548207 -30867035 + AluJb SINE Alu 34 205 -107 200 296 32 3 chr6 151548868 151548947 -30866295 + MIR SINE MIR 32 110 -107 22 0 0 0 chr6 151549545 151549567 -30865675 + AT_rich Low_complexity Low_complexity 1 22 0 1869 152 7 3 chr6 151551283 151551599 -30863643 + AluSx SINE Alu 1 317 0 3261 139 44 2 chr6 151551733 151552281 -30862961 - L1PA16 LINE L1 -1 6165 5595 2412 96 0 3 chr6 151553293 151553606 -30861636 + AluSq SINE Alu 1 312 -1 271 303 40 10 chr6 151553832 151553931 -30861311 + MIR SINE MIR 94 195 -67 1514 89 4 77 chr6 151553986 151554148 -30861094 + MER30 DNA MER1_type 1 140 -90 2455 68 0 0 chr6 151554148 151554442 -30860800 + AluY SINE Alu 1 294 -17 1514 89 4 77 chr6 151554442 151554527 -30860715 + MER30 DNA MER1_type 140 230 0 846 175 137 0 chr6 151554540 151554723 -30860519 - MIR SINE MIR -21 241 34 1146 261 15 18 chr6 151554729 151555059 -30860183 + MER69 DNA AcHobo 8 336 -890 995 210 94 32 chr6 151555388 151555759 -30859483 + MER69 DNA AcHobo 1842 2235 -291 743 168 40 8 chr6 151555759 151555884 -30859358 + FLAM_C SINE Alu 1 129 -14 327 210 184 34 chr6 151555894 151556098 -30859144 + MER69 DNA AcHobo 2257 2502 -24 1709 162 54 14 chr6 151556098 151556394 -30858848 + AluJo SINE Alu 1 308 -4 327 210 184 34 chr6 151556394 151556422 -30858820 + MER69 DNA AcHobo 2502 2524 -2 298 195 69 46 chr6 151557184 151557271 -30857971 - MER5B DNA MER1_type -2 176 88 992 173 29 24 chr6 151557488 151557696 -30857546 + MER3 DNA MER1_type 1 209 0 467 176 0 0 chr6 151558324 151558398 -30856844 + tRNA-Gly-GGC tRNA tRNA 1 74 0 2037 129 27 0 chr6 151558412 151558707 -30856535 + AluSx SINE Alu 1 303 -9 2529 78 0 0 chr6 151558713 151559019 -30856223 + AluY SINE Alu 1 306 -5 3112 123 14 10 chr6 151559100 151559598 -30855644 + LTR3b LTR ERVK 1 500 0 359 303 32 46 chr6 151560287 151560505 -30854737 - L1MEc LINE L1 -6075 321 107 462 324 131 20 chr6 151560584 151560684 -30854558 + L1M4 LINE L1 2227 2315 -3831 2272 88 0 7 chr6 151560684 151560992 -30854250 + AluY SINE Alu 1 306 0 462 324 131 20 chr6 151560992 151561340 -30853902 + L1M4 LINE L1 2315 2726 -3420 33 25 0 0 chr6 151561366 151561406 -30853836 + AT_rich Low_complexity Low_complexity 1 40 0 383 304 114 19 chr6 151561421 151561684 -30853558 + L1M4 LINE L1 2875 3162 -2984 27 81 0 0 chr6 151561859 151561921 -30853321 + AT_rich Low_complexity Low_complexity 1 62 0 1974 171 110 6 chr6 151562497 151562860 -30852382 + MSTB LTR MaLR 26 426 0 5138 129 15 0 chr6 151563061 151563336 -30851906 + L1PA16 LINE L1 5333 5602 -657 504 117 0 0 chr6 151563336 151563413 -30851829 + MADE1 DNA Mariner 3 79 -1 5138 129 15 0 chr6 151563413 151563985 -30851257 + L1PA16 LINE L1 5602 6259 0 1803 163 7 7 chr6 151564486 151564780 -30850462 + AluJb SINE Alu 2 295 -17 514 259 83 64 chr6 151565034 151565427 -30849815 + L1ME LINE L1 5428 5823 -298 270 289 52 0 chr6 151566022 151566119 -30849123 + MER103 DNA DNA 17 118 -48 593 251 101 5 chr6 151566918 151567117 -30848125 - LTR16B LTR ERVL 0 464 247 879 229 54 63 chr6 151567171 151567503 -30847739 - L1MC5 LINE L1 -1008 6953 6625 57 28 0 0 chr6 151567874 151567945 -30847297 + AT_rich Low_complexity Low_complexity 1 71 0 211 219 0 41 chr6 151568083 151568156 -30847086 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 617 219 109 5 chr6 151568200 151568401 -30846841 - L1MC5 LINE L1 -1875 5933 5712 534 229 38 22 chr6 151568405 151568588 -30846654 - L1MC5 LINE L1 -2309 5499 5314 2194 99 7 3 chr6 151568875 151569177 -30846065 - AluSq SINE Alu -10 303 1 2147 133 45 14 chr6 151570542 151570895 -30844347 + THE1B LTR MaLR 1 364 0 486 0 0 0 chr6 151571115 151571169 -30844073 + (TG)n Simple_repeat Simple_repeat 1 54 0 365 160 200 20 chr6 151571348 151571448 -30843794 - L2 LINE L2 -5 3308 3191 4778 151 34 7 chr6 151571584 151572448 -30842794 - L1MA7 LINE L1 -2 6289 5403 2316 109 0 0 chr6 151573123 151573425 -30841817 + AluSc SINE Alu 1 302 -7 25 0 0 0 chr6 151573566 151573591 -30841651 + AT_rich Low_complexity Low_complexity 1 25 0 376 241 84 118 chr6 151573939 151574027 -30841215 - MIR SINE MIR -16 246 156 1564 156 60 4 chr6 151574027 151574296 -30840946 - AluJb SINE Alu -28 284 1 376 241 84 118 chr6 151574296 151574410 -30840832 - MIR SINE MIR -106 156 51 334 302 43 0 chr6 151574579 151574695 -30840547 + MIR SINE MIR 120 240 -22 186 43 0 0 chr6 151576316 151576339 -30838903 + (CA)n Simple_repeat Simple_repeat 1 23 0 332 290 8 16 chr6 151576401 151576525 -30838717 - LTR67 LTR ERVL 0 557 435 28 29 0 0 chr6 151576948 151576983 -30838259 + AT_rich Low_complexity Low_complexity 1 35 0 315 302 192 10 chr6 151577152 151577315 -30837927 + MIR SINE MIR 39 233 -29 211 351 90 27 chr6 151577832 151577943 -30837299 - L2 LINE L2 -12 3260 3143 1707 183 20 20 chr6 151577983 151578338 -30836904 - MLT1A1 LTR MaLR 0 365 11 2560 98 0 35 chr6 151578820 151579197 -30836045 - THE1B LTR MaLR 0 364 1 438 20 0 0 chr6 151581419 151581470 -30833772 + (CA)n Simple_repeat Simple_repeat 1 51 0 1813 124 7 4 chr6 151581545 151581818 -30833424 + AluSg SINE Alu 37 310 0 1368 283 75 41 chr6 151582162 151582303 -30832939 - L1M4 LINE L1 -3629 3015 2880 9928 66 0 0 chr6 151582303 151584370 -30830872 + L1PA6 LINE L1 4087 6154 0 1368 283 75 41 chr6 151584370 151586023 -30829219 - L1M4 LINE L1 -3764 2880 1025 26 30 0 0 chr6 151587562 151587595 -30827647 + AT_rich Low_complexity Low_complexity 1 33 0 21 71 0 0 chr6 151588583 151588625 -30826617 + AT_rich Low_complexity Low_complexity 1 42 0 2029 114 42 0 chr6 151589404 151589693 -30825549 - AluSq SINE Alu -12 301 1 1697 166 59 3 chr6 151589721 151590077 -30825165 + L1MB3 LINE L1 5807 6182 -1 282 253 51 0 chr6 151590102 151590181 -30825061 + MER69 DNA AcHobo 1451 1533 -993 1736 124 41 24 chr6 151590310 151590354 -30824888 - AluSq SINE Alu -18 295 253 198 0 0 0 chr6 151590354 151590376 -30824866 + (CAGTG)n Simple_repeat Simple_repeat 1 22 0 1736 124 41 24 chr6 151590376 151590621 -30824621 - AluSq SINE Alu -60 253 1 978 194 0 0 chr6 151590783 151590948 -30824294 - FRAM SINE Alu -1 165 1 21 0 0 0 chr6 151591241 151591262 -30823980 + AT_rich Low_complexity Low_complexity 1 21 0 1799 169 3 0 chr6 151591269 151591559 -30823683 - AluSx SINE Alu -21 291 1 181 342 67 40 chr6 151591575 151591800 -30823442 - MIR SINE MIR -12 250 20 368 328 81 14 chr6 151592911 151593256 -30821986 + HAL1 LINE L1 155 522 -1985 2093 129 3 0 chr6 151593395 151593689 -30821553 - AluSx SINE Alu -17 295 1 303 288 96 8 chr6 151594077 151594202 -30821040 + L2 LINE L2 877 1012 -2302 1714 162 52 30 chr6 151594208 151594573 -30820669 - THE1C LTR MaLR 0 375 3 1821 126 78 37 chr6 151594963 151595337 -30819905 - L1MA7 LINE L1 -3 6288 5900 457 127 0 0 chr6 151595353 151595424 -30819818 + L1MA7 LINE L1 5824 5894 -397 1405 305 133 32 chr6 151595424 151596156 -30819086 + L2 LINE L2 1827 2644 -670 1477 205 49 68 chr6 151596156 151596629 -30818613 - MLT2C2 LTR ERVL 0 464 1 1405 305 133 32 chr6 151596629 151596679 -30818563 + L2 LINE L2 2644 2688 -626 421 210 0 0 chr6 151596711 151596792 -30818450 + AluJ/FLAM SINE Alu 1 81 -231 1191 268 127 20 chr6 151597014 151597399 -30817843 + L2 LINE L2 2329 2770 -544 1067 213 69 103 chr6 151597399 151597980 -30817262 - MER34B LTR ERV1 0 565 5 1191 268 127 20 chr6 151597980 151598042 -30817200 + L2 LINE L2 2770 2824 -490 21 36 0 0 chr6 151598484 151598512 -30816730 + AT_rich Low_complexity Low_complexity 1 28 0 699 194 0 0 chr6 151598628 151598762 -30816480 + MLT2D LTR ERVL 3 136 -278 301 77 0 0 chr6 151598762 151598801 -30816441 - L1M2 LINE L1 -428 5863 5825 516 308 138 29 chr6 151598822 151599134 -30816108 + L3 LINE CR1 960 1305 -272 228 228 51 38 chr6 151599209 151599288 -30815954 + L3 LINE CR1 1450 1529 -48 328 335 67 39 chr6 151599407 151599586 -30815656 - MIR SINE MIR -70 192 9 558 221 15 0 chr6 151599835 151599966 -30815276 + MLT2D LTR ERVL 1 133 -281 642 162 34 0 chr6 151599966 151600083 -30815159 - L1MA7 LINE L1 -425 5866 5746 1901 113 102 27 chr6 151600083 151600451 -30814791 + L1MA7 LINE L1 5892 6290 -1 1043 219 81 25 chr6 151600485 151600768 -30814474 + MLT2D LTR ERVL 113 411 -3 1777 126 49 25 chr6 151600785 151601071 -30814171 - AluSx SINE Alu -18 294 2 511 244 118 15 chr6 151601149 151601284 -30813958 + MLT1E LTR MaLR 376 524 -69 342 300 83 116 chr6 151602274 151602757 -30812485 + L1M2 LINE L1 472 938 -5911 26 0 0 0 chr6 151605021 151605047 -30810195 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr6 151606298 151606331 -30808911 + AT_rich Low_complexity Low_complexity 1 33 0 230 358 234 7 chr6 151607262 151607569 -30807673 + L3 LINE CR1 817 1193 -384 372 364 23 6 chr6 151607704 151607880 -30807362 + L3 LINE CR1 1171 1349 -228 306 0 0 0 chr6 151608036 151608070 -30807172 + (TG)n Simple_repeat Simple_repeat 2 35 0 916 191 18 36 chr6 151608648 151608868 -30806374 + AluSg SINE Alu 37 252 -58 423 313 113 5 chr6 151610507 151610702 -30804540 + L1ME4a LINE L1 5685 5900 -221 240 35 0 0 chr6 151610826 151610855 -30804387 + (CA)n Simple_repeat Simple_repeat 1 29 0 578 224 31 25 chr6 151610864 151611025 -30804217 + L1ME LINE L1 5616 5777 -387 463 179 0 24 chr6 151611791 151611861 -30803381 + Tigger3(Golem) DNA MER2_type 1 70 -532 1930 153 64 0 chr6 151611861 151612187 -30803055 - MER7A DNA MER2_type -1 345 1 463 179 0 24 chr6 151612187 151612200 -30803042 + Tigger3(Golem) DNA MER2_type 70 82 -520 340 38 0 57 chr6 151612198 151612251 -30802991 + Tigger3(Golem) DNA MER2_type 2721 2770 -259 * 844 56 0 0 chr6 151616574 151616681 -30798561 - L1PA12 LINE L1 -258 5910 5804 904 61 91 0 chr6 151616682 151616814 -30798428 + L1PA13 LINE L1 6018 6161 -2 22 0 0 0 chr6 151618844 151618866 -30796376 + AT_rich Low_complexity Low_complexity 1 22 0 692 203 0 0 chr6 151619982 151620110 -30795132 - FLAM_C SINE Alu -15 128 1 371 265 80 9 chr6 151620262 151620400 -30794842 - MIR SINE MIR -73 135 2 716 289 69 11 chr6 151620934 151621194 -30794048 + L3 LINE CR1 1302 1576 -1 349 333 48 52 chr6 151622063 151622333 -30792909 - L2 LINE L2 -1052 2262 1994 213 240 0 0 chr6 151623112 151623162 -30792080 + (TA)n Simple_repeat Simple_repeat 1 50 0 200 354 83 26 chr6 151623174 151623366 -30791876 - MIR SINE MIR -59 203 1 2425 37 41 0 chr6 151624474 151624768 -30790474 - AluY SINE Alu -5 306 1 36 62 0 0 chr6 151624923 151624987 -30790255 + AT_rich Low_complexity Low_complexity 1 64 0 474 310 13 6 chr6 151627648 151627806 -30787436 + MIR SINE MIR 13 171 -91 472 99 39 50 chr6 151627829 151628010 -30787232 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 312 107 66 33 chr6 151628023 151628145 -30787097 + (TATAA)n Simple_repeat Simple_repeat 5 130 0 334 333 58 13 chr6 151628159 151628315 -30786927 + MIR3 SINE MIR 43 205 -3 36 0 0 0 chr6 151629296 151629332 -30785910 + AT_rich Low_complexity Low_complexity 1 36 0 24 77 0 0 chr6 151629464 151629516 -30785726 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr6 151629835 151629865 -30785377 + AT_rich Low_complexity Low_complexity 1 30 0 2145 76 3 0 chr6 151632689 151632979 -30782263 - L1P3 LINE L1 -579 5575 5285 3937 65 0 0 chr6 151632981 151633475 -30781767 + L1PA7 LINE L1 5638 6131 -23 244 234 16 31 chr6 151633592 151633656 -30781586 - L2 LINE L2 -34 3238 3176 1005 297 50 10 chr6 151635669 151636087 -30779155 - LTR16A LTR ERVL 0 450 16 268 286 107 0 chr6 151636192 151636276 -30778966 - MIR SINE MIR -102 160 68 356 350 0 0 chr6 151636770 151636890 -30778352 + MIR3 SINE MIR 75 194 -14 3381 194 25 20 chr6 151637253 151637414 -30777828 + L1PA16 LINE L1 4552 4711 -1435 2156 64 32 21 chr6 151637414 151637726 -30777516 + AluY SINE Alu 1 315 0 3381 194 25 20 chr6 151637726 151638325 -30776917 + L1PA16 LINE L1 4711 5317 -829 4703 140 13 4 chr6 151638330 151639085 -30776157 + L1PA16 LINE L1 5399 6160 -6 32 0 0 0 chr6 151639693 151639725 -30775517 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr6 151640591 151640618 -30774624 + AT_rich Low_complexity Low_complexity 1 27 0 1346 106 5 21 chr6 151640657 151640873 -30774369 + AluSg/x SINE Alu 98 310 0 258 351 22 1 chr6 151643160 151643265 -30771977 - MIR SINE MIR -67 141 35 203 256 0 0 chr6 151643328 151643371 -30771871 + MIR SINE MIR 220 262 0 21 0 0 0 chr6 151643375 151643396 -30771846 + AT_rich Low_complexity Low_complexity 1 21 0 183 290 29 14 chr6 151644411 151644480 -30770762 - MIR SINE MIR -6 256 187 2009 93 36 11 chr6 151645085 151645365 -30769877 + AluSg SINE Alu 1 287 -23 1801 142 16 35 chr6 151645376 151645687 -30769555 + AluJb SINE Alu 1 305 -7 361 367 105 52 chr6 151645794 151646233 -30769009 + L2 LINE L2 2804 3265 -7 2085 118 16 7 chr6 151647106 151647412 -30767830 - AluSg SINE Alu -1 309 1 215 250 158 0 chr6 151647793 151647869 -30767373 - MER5A DNA MER1_type -83 106 19 412 299 83 6 chr6 151650508 151650665 -30764577 + MIR SINE MIR 40 208 -54 715 269 28 0 chr6 151650973 151651155 -30764087 - MIR SINE MIR 0 262 76 670 158 79 7 chr6 151651193 151651332 -30763910 + FRAM SINE Alu 5 153 -23 458 303 48 24 chr6 151651835 151652000 -30763242 - L2 LINE L2 -1 3271 3103 27 62 0 0 chr6 151652393 151652441 -30762801 + AT_rich Low_complexity Low_complexity 1 48 0 241 346 206 0 chr6 151652703 151652810 -30762432 - L2 LINE L2 -4 3268 3140 227 323 78 47 chr6 151652827 151653019 -30762223 + L2 LINE L2 2931 3128 -185 1146 118 12 0 chr6 151653068 151653229 -30762013 + AluSg/x SINE Alu 136 298 -14 394 287 0 20 chr6 151653242 151653343 -30761899 + L2 LINE L2 3215 3313 0 28 61 0 0 chr6 151655222 151655271 -30759971 + AT_rich Low_complexity Low_complexity 1 49 0 250 250 0 62 chr6 151655274 151655386 -30759856 - L1ME4a LINE L1 -49 6072 5968 560 270 127 11 chr6 151655808 151655997 -30759245 - MIR SINE MIR -39 223 13 241 279 0 0 chr6 151657327 151657388 -30757854 + (TA)n Simple_repeat Simple_repeat 1 61 0 2046 132 0 14 chr6 151657631 151657927 -30757315 - AluSx SINE Alu -20 292 1 2360 90 0 7 chr6 151657935 151658245 -30756997 - AluY SINE Alu -3 308 1 778 319 15 27 chr6 151659422 151659685 -30755557 - MIR SINE MIR -2 260 1 1569 195 0 16 chr6 151659995 151660303 -30754939 - AluJo SINE Alu -8 304 2 704 148 9 0 chr6 151660342 151660457 -30754785 - FLAM_A SINE Alu -2 140 25 821 232 11 0 chr6 151660463 151660640 -30754602 + MER58A DNA MER1_type 46 224 0 472 278 141 13 chr6 151660814 151661041 -30754201 + Charlie8 DNA MER1_type 41 296 -2121 23 0 0 0 chr6 151661220 151661243 -30753999 + AT_rich Low_complexity Low_complexity 1 23 0 1848 154 26 31 chr6 151661243 151661625 -30753617 - L1MA8 LINE L1 -6 6285 5906 23 33 0 0 chr6 151662346 151662376 -30752866 + AT_rich Low_complexity Low_complexity 1 30 0 24 85 0 0 chr6 151663098 151663157 -30752085 + AT_rich Low_complexity Low_complexity 1 59 0 2107 142 35 38 chr6 151663578 151664000 -30751242 - MER61C LTR ERV1 0 434 14 239 345 134 22 chr6 151665135 151665494 -30749748 + L2 LINE L2 1808 2206 -1108 2438 58 0 0 chr6 151665946 151666240 -30749002 + AluY SINE Alu 1 294 -17 3742 98 56 22 chr6 151666264 151666853 -30748389 - MER4B LTR ERV1 -1 609 1 192 170 43 43 chr6 151667329 151667376 -30747866 + L2 LINE L2 3264 3310 -3 227 200 0 0 chr6 151667693 151667738 -30747504 + L1MC4 LINE L1 6659 6703 -1339 * 245 176 39 0 chr6 151667698 151667749 -30747493 - L1MD3 LINE L1 -1327 6668 6616 198 329 14 0 chr6 151668240 151668310 -30746932 - MIR SINE MIR -122 140 70 27 73 0 0 chr6 151669054 151669109 -30746133 + AT_rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr6 151669549 151669580 -30745662 + AT_rich Low_complexity Low_complexity 1 31 0 262 333 33 19 chr6 151669854 151669987 -30745255 - MIR SINE MIR -57 151 10 31 44 0 0 chr6 151670676 151670721 -30744521 + AT_rich Low_complexity Low_complexity 1 45 0 979 264 95 24 chr6 151671887 151672350 -30742892 + MER113 DNA MER1_type? 23 518 -3 5102 154 10 8 chr6 151672676 151673539 -30741703 - MER6 DNA MER2_type 0 865 1 1959 154 24 32 chr6 151674912 151675281 -30739961 - MER47A DNA MER2_type 0 366 1 190 223 0 106 chr6 151675580 151675674 -30739568 - L3 LINE CR1 -143 1434 1351 23 33 0 0 chr6 151677109 151677139 -30738103 + AT_rich Low_complexity Low_complexity 1 30 0 482 249 101 50 chr6 151677248 151677525 -30737717 - L1MC4a LINE L1 -1784 6024 5734 405 0 0 0 chr6 151677895 151677940 -30737302 + (CA)n Simple_repeat Simple_repeat 2 46 0 24 67 0 0 chr6 151678546 151678591 -30736651 + AT_rich Low_complexity Low_complexity 1 45 0 36 53 0 0 chr6 151678871 151678928 -30736314 + AT_rich Low_complexity Low_complexity 1 57 0 493 242 37 63 chr6 151679054 151679244 -30735998 + MIR SINE MIR 37 221 -41 321 242 55 0 chr6 151679730 151679821 -30735421 - Charlie7 DNA MER1_type -2515 97 2 357 284 18 0 chr6 151680070 151680179 -30735063 + MER103 DNA DNA 7 117 -49 1731 147 0 43 chr6 151681041 151681340 -30733902 - AluJo SINE Alu -11 301 16 22 0 0 0 chr6 151683695 151683717 -30731525 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr6 151683787 151683828 -30731414 + AT_rich Low_complexity Low_complexity 1 41 0 1731 175 10 3 chr6 151684606 151684903 -30730339 + AluJb SINE Alu 2 300 -12 212 179 0 0 chr6 151685305 151685344 -30729898 + (TA)n Simple_repeat Simple_repeat 2 40 0 385 359 47 5 chr6 151687703 151687895 -30727347 + MIR SINE MIR 28 227 -35 27 73 0 0 chr6 151689531 151689586 -30725656 + AT_rich Low_complexity Low_complexity 1 55 0 23 33 0 0 chr6 151689752 151689782 -30725460 + AT_rich Low_complexity Low_complexity 1 30 0 675 180 57 103 chr6 151690780 151690819 -30724423 - MER5A DNA MER1_type 0 189 150 2126 109 3 13 chr6 151690819 151691123 -30724119 + AluSx SINE Alu 1 301 -11 675 180 57 103 chr6 151691123 151691277 -30723965 - MER5A DNA MER1_type -39 150 5 206 298 105 9 chr6 151691378 151691492 -30723750 - L2 LINE L2 -12 3301 3177 28 29 0 0 chr6 151692418 151692453 -30722789 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr6 151692566 151692595 -30722647 + AT_rich Low_complexity Low_complexity 1 29 0 796 142 8 15 chr6 151693513 151693647 -30721595 + FLAM_C SINE Alu 1 133 0 205 336 51 44 chr6 151695327 151695464 -30719778 + MIR3 SINE MIR 3 140 -68 2803 161 48 0 chr6 151695470 151695990 -30719252 - L1MB3 LINE L1 -2 6181 5637 24 32 0 0 chr6 151697195 151697226 -30718016 + AT_rich Low_complexity Low_complexity 1 31 0 342 0 0 0 chr6 151700360 151700398 -30714844 + (CA)n Simple_repeat Simple_repeat 1 38 0 307 189 14 40 chr6 151701018 151701092 -30714150 + Zaphod DNA AcHobo 3960 4031 0 189 74 0 0 chr6 151703632 151703659 -30711583 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 192 341 81 8 chr6 151704262 151704385 -30710857 + L2 LINE L2 3182 3313 0 2150 124 3 10 chr6 151704473 151704779 -30710463 + AluSx SINE Alu 1 304 -8 232 407 74 0 chr6 151705118 151705226 -30710016 - L2 LINE L2 -18 3254 3139 199 250 0 0 chr6 151706129 151706173 -30709069 - MIR SINE MIR -74 134 91 379 177 21 52 chr6 151706751 151706847 -30708395 + L2 LINE L2 3221 3313 0 15291 22 0 2 chr6 151708626 151711195 -30704047 - L1PA2 LINE L1 -2 6153 3589 243 167 0 24 chr6 151711239 151711281 -30703961 - L2 LINE L2 -93 3220 3180 225 380 70 52 chr6 151711314 151711817 -30703425 - L2 LINE L2 -210 3062 2551 2168 159 5 22 chr6 151712160 151712530 -30702712 - THE1B LTR MaLR 0 364 1 11202 104 11 0 chr6 151712530 151714093 -30701149 - THE1B-int LTR MaLR 0 1580 1 2171 154 5 22 chr6 151714093 151714463 -30700779 - THE1B LTR MaLR 0 364 1 215 78 0 78 chr6 151714679 151714743 -30700499 + (TTTTTA)n Simple_repeat Simple_repeat 6 64 0 2009 130 46 30 chr6 151714943 151715311 -30699931 - THE1C LTR MaLR -1 374 1 1676 174 19 29 chr6 151716233 151716543 -30698699 + AluJo SINE Alu 4 310 -2 2161 122 0 0 chr6 151718103 151718399 -30696843 + AluSg SINE Alu 1 296 -14 207 0 0 0 chr6 151718513 151718536 -30696706 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 23 68 0 0 chr6 151718882 151718926 -30696316 + AT_rich Low_complexity Low_complexity 1 44 0 1648 174 27 24 chr6 151720234 151720528 -30694714 + AluJo SINE Alu 1 295 -17 54 62 0 0 chr6 151720620 151720716 -30694526 + AT_rich Low_complexity Low_complexity 1 96 0 2146 109 10 3 chr6 151720787 151721081 -30694161 - AluSg SINE Alu -14 296 1 375 312 24 16 chr6 151721620 151721745 -30693497 + L2 LINE L2 3143 3268 -4 643 314 86 42 chr6 151722062 151722399 -30692843 - L2 LINE L2 0 3313 2962 930 321 100 48 chr6 151722457 151723246 -30691996 - L2 LINE L2 -935 2379 1550 205 177 152 89 chr6 151723615 151723694 -30691548 - L3 LINE CR1 -892 685 602 21 0 0 0 chr6 151723796 151723817 -30691425 + AT_rich Low_complexity Low_complexity 1 21 0 445 286 18 0 chr6 151724127 151724239 -30691003 - MIR3 SINE MIR -6 202 89 218 184 0 0 chr6 151724388 151724426 -30690816 + T-rich Low_complexity Low_complexity 2 39 0 27 29 0 0 chr6 151725115 151725149 -30690093 + AT_rich Low_complexity Low_complexity 1 34 0 817 197 7 0 chr6 151725465 151725617 -30689625 + FRAM SINE Alu 1 153 -13 1899 157 3 19 chr6 151726743 151727056 -30688186 - AluJb SINE Alu -4 308 1 25 51 0 0 chr6 151729061 151729100 -30686142 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr6 151729256 151729283 -30685959 + AT_rich Low_complexity Low_complexity 1 27 0 226 278 144 0 chr6 151729348 151729445 -30685797 - L1MC5 LINE L1 -125 7836 7726 23 0 0 0 chr6 151730530 151730553 -30684689 + AT_rich Low_complexity Low_complexity 1 23 0 238 275 15 21 chr6 151733566 151733651 -30681591 + CT-rich Low_complexity Low_complexity 1 84 0 1739 148 35 7 chr6 151733884 151734167 -30681075 + AluSg SINE Alu 4 294 -16 287 301 142 24 chr6 151734207 151734382 -30680860 - MIR SINE MIR -51 157 2 23 0 0 0 chr6 151735570 151735593 -30679649 + AT_rich Low_complexity Low_complexity 1 23 0 1340 199 43 10 chr6 151735851 151736153 -30679089 - AluJb SINE Alu 0 312 1 208 283 0 19 chr6 151736680 151736733 -30678509 + L2 LINE L2 3257 3308 -5 5314 72 7 10 chr6 151736984 151737674 -30677568 - LTR12 LTR ERV1 0 688 1 4449 137 18 12 chr6 151737943 151738702 -30676540 - L1MC1 LINE L1 -19 6314 5551 539 142 32 43 chr6 151738748 151738872 -30676370 - L1MC1 LINE L1 -177 6001 5938 696 277 126 19 chr6 151739209 151739480 -30675762 - LTR16B LTR ERVL 0 464 165 192 40 0 0 chr6 151740114 151740139 -30675103 + (TG)n Simple_repeat Simple_repeat 2 26 0 6390 83 17 0 chr6 151740309 151741637 -30673605 + L1PA8 LINE L1 4812 6154 -18 297 284 22 75 chr6 151741784 151741918 -30673324 + MIR3 SINE MIR 31 157 -51 22 0 0 0 chr6 151741925 151741947 -30673295 + AT_rich Low_complexity Low_complexity 1 22 0 357 148 19 0 chr6 151743559 151743613 -30671629 - MER6 DNA MER2_type -507 358 304 210 71 0 0 chr6 151744217 151744245 -30670997 + (TG)n Simple_repeat Simple_repeat 2 29 0 4216 156 72 18 chr6 151744248 151744594 -30670648 + MER6 DNA MER2_type 1 327 -538 270 0 0 0 chr6 151744594 151744624 -30670618 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 4216 156 72 18 chr6 151744624 151745097 -30670145 + MER6 DNA MER2_type 327 864 -1 228 182 0 0 chr6 151745097 151745141 -30670101 + (CATA)n Simple_repeat Simple_repeat 4 47 0 267 31 0 0 chr6 151745249 151745281 -30669961 + (TA)n Simple_repeat Simple_repeat 1 32 0 2005 182 24 22 chr6 151745328 151745741 -30669501 - MLT2D LTR ERVL 0 414 1 313 197 158 79 chr6 151746242 151746369 -30668873 + MIR SINE MIR 67 203 -59 28 48 0 0 chr6 151746762 151746804 -30668438 + AT_rich Low_complexity Low_complexity 1 42 0 1595 148 7 22 chr6 151748209 151748513 -30666729 - THE1C LTR MaLR 0 375 1 9919 120 38 12 chr6 151748513 151749603 -30665639 - THE1C-int LTR MaLR 0 1580 438 2409 86 3 0 chr6 151749603 151749905 -30665337 - AluY SINE Alu -8 303 1 9919 120 38 12 chr6 151749905 151750355 -30664887 - THE1C-int LTR MaLR -1142 438 1 2223 135 27 16 chr6 151750355 151750726 -30664516 - THE1C LTR MaLR 0 375 1 251 295 0 39 chr6 151750963 151751041 -30664201 + L2 LINE L2 3190 3264 -8 296 283 45 90 chr6 151752704 151752881 -30662361 + L2 LINE L2 2566 2734 -580 412 235 71 0 chr6 151753193 151753291 -30661951 + L2 LINE L2 3153 3257 -15 1785 42 28 0 chr6 151754435 151754648 -30660594 + AluY SINE Alu 78 296 -15 1974 170 14 14 chr6 151755141 151755506 -30659736 - MLT1A1 LTR MaLR 0 365 1 903 251 48 27 chr6 151755764 151756059 -30659183 - L1ME2 LINE L1 -37 6127 5827 324 0 0 0 chr6 151756068 151756104 -30659138 + (CA)n Simple_repeat Simple_repeat 2 37 0 1387 206 26 48 chr6 151756122 151756500 -30658742 - MLT1D LTR MaLR -135 370 1 1016 142 0 42 chr6 151756565 151756755 -30658487 - L1M3 LINE L1 -570 5598 5417 190 314 38 48 chr6 151757051 151757156 -30658086 + MIR SINE MIR 48 151 -111 24 32 0 0 chr6 151757193 151757224 -30658018 + AT_rich Low_complexity Low_complexity 1 31 0 4848 159 31 10 chr6 151757224 151758300 -30656942 - L1MB1 LINE L1 -1 6167 5068 3817 181 34 62 chr6 151758295 151758486 -30656756 + L1 LINE L1 4127 4322 -1824 * 1919 142 0 25 chr6 151758486 151758804 -30656438 + AluJo SINE Alu 3 312 0 3817 181 34 62 chr6 151758804 151759587 -30655655 + L1 LINE L1 4322 5074 -1072 188 361 93 28 chr6 151759690 151759798 -30655444 - L2 LINE L2 -20 3252 3138 271 247 22 0 chr6 151759850 151759939 -30655303 + L1MC5 LINE L1 7629 7719 -242 1260 243 113 31 chr6 151759943 151760358 -30654884 - MLT1D LTR MaLR -3 502 54 2496 54 0 7 chr6 151760392 151760688 -30654554 - AluSc SINE Alu -15 294 1 227 241 138 0 chr6 151761470 151761557 -30653685 - L2 LINE L2 -12 3301 3203 214 292 108 0 chr6 151761717 151761782 -30653460 - MIR SINE MIR -67 141 70 189 356 168 20 chr6 151761857 151761958 -30653284 + MIR3 SINE MIR 51 166 -42 685 327 135 8 chr6 151762856 151763281 -30651961 + L2 LINE L2 2599 3074 -239 832 224 114 5 chr6 151763310 151763511 -30651731 + MER58A DNA MER1_type 2 224 0 340 216 48 21 chr6 151763530 151763668 -30651574 - L1ME LINE L1 -5921 149 10 * 776 266 25 13 chr6 151763642 151763879 -30651363 - L1MCc LINE L1 -4938 624 385 327 266 39 16 chr6 151763941 151764069 -30651173 - L1MCc LINE L1 -5202 1221 1091 * 1190 286 42 5 chr6 151764062 151764439 -30650803 - L1MCc LINE L1 -6008 415 25 1784 206 3 14 chr6 151764586 151764935 -30650307 + MLT1A1 LTR MaLR 21 365 0 481 287 100 38 chr6 151764944 151765098 -30650144 + L1ME4a LINE L1 5547 5690 -431 3497 157 65 21 chr6 151765098 151765820 -30649422 - L1MA8 LINE L1 -2 6289 5536 481 287 100 38 chr6 151765820 151766006 -30649236 + L1ME4a LINE L1 5690 5908 -213 215 182 23 0 chr6 151765996 151766040 -30649202 + (TA)n Simple_repeat Simple_repeat 2 46 0 * 362 194 0 10 chr6 151766093 151766191 -30649051 + (TA)n Simple_repeat Simple_repeat 2 98 0 247 286 10 10 chr6 151766226 151766324 -30648918 + (TA)n Simple_repeat Simple_repeat 2 99 0 2179 181 26 111 chr6 151766326 151766984 -30648258 + L1MC4 LINE L1 7289 7890 -152 424 211 0 22 chr6 151767004 151767094 -30648148 + MER21B LTR ERV1 1 88 -775 3082 232 31 33 chr6 151767132 151767197 -30648045 + MER21B LTR ERV1 29 93 -770 2070 129 0 3 chr6 151767197 151767492 -30647750 - AluSx SINE Alu -18 294 1 3082 232 31 33 chr6 151767492 151768209 -30647033 + MER21B LTR ERV1 93 809 -54 420 232 16 16 chr6 151768285 151768410 -30646832 + L1MC4 LINE L1 7914 8038 -4 204 227 23 0 chr6 151768760 151768804 -30646438 + GA-rich Low_complexity Low_complexity 2 46 0 294 337 10 0 chr6 151770060 151770158 -30645084 + MIR SINE MIR 47 145 -63 185 86 57 0 chr6 151770363 151770398 -30644844 + GA-rich Low_complexity Low_complexity 3 39 0 207 69 0 0 chr6 151770410 151770439 -30644803 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 198 0 0 0 chr6 151770450 151770472 -30644770 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 2826 175 9 23 chr6 151770762 151770819 -30644423 - MLT2B1 LTR ERVL 0 520 464 2410 114 22 6 chr6 151770819 151771177 -30644065 + THE1B LTR MaLR 1 364 0 2826 175 9 23 chr6 151771177 151771646 -30643596 - MLT2B1 LTR ERVL -56 464 1 1692 124 45 0 chr6 151772199 151772441 -30642801 + AluSq SINE Alu 1 253 -60 565 241 88 107 chr6 151772446 151772512 -30642730 + MIR SINE MIR 2 68 -194 2034 135 0 3 chr6 151772512 151772837 -30642405 + AluSg SINE Alu 1 324 0 565 241 88 107 chr6 151772837 151773030 -30642212 + MIR SINE MIR 68 257 -5 3050 93 51 2 chr6 151774808 151775239 -30640003 - MLT2A2 LTR ERVL -1 452 1 353 289 91 41 chr6 151775242 151775484 -30639758 - MIR SINE MIR 0 262 9 332 226 39 29 chr6 151776215 151776317 -30638925 + CT-rich Low_complexity Low_complexity 1 103 0 653 63 26 79 chr6 151776317 151776506 -30638736 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 347 158 0 26 chr6 151776535 151776611 -30638631 + CT-rich Low_complexity Low_complexity 1 74 0 792 144 52 87 chr6 151776654 151776851 -30638391 - AluSg/x SINE Alu 0 306 116 2253 84 0 0 chr6 151777659 151777933 -30637309 - AluSg SINE Alu -16 294 21 196 246 169 0 chr6 151778110 151778175 -30637067 + MIR SINE MIR 58 133 -129 802 177 0 50 chr6 151778203 151778384 -30636858 + L1PA13 LINE L1 4465 4636 -1510 1905 148 26 23 chr6 151778398 151778708 -30636534 + AluSx SINE Alu 1 311 -1 5395 113 18 37 chr6 151778737 151779800 -30635442 + L1PA13 LINE L1 4631 5667 -496 1994 151 0 7 chr6 151779800 151780105 -30635137 + AluSx SINE Alu 1 303 -9 5395 113 18 37 chr6 151780105 151780591 -30634651 + L1PA13 LINE L1 5667 6160 -3 29 0 0 0 chr6 151780687 151780716 -30634526 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 151780860 151780881 -30634361 + (CA)n Simple_repeat Simple_repeat 2 22 0 188 119 0 48 chr6 151781411 151781453 -30633789 - L2 LINE L2 0 3313 3274 2721 94 14 3 chr6 151781507 151781878 -30633364 - THE1C LTR MaLR 0 375 1 254 339 0 45 chr6 151781887 151781999 -30633243 + MIR SINE MIR 15 121 -141 478 275 83 50 chr6 151782032 151782272 -30632970 - L1ME3 LINE L1 -1 6161 5914 288 0 0 0 chr6 151782281 151782313 -30632929 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1284 147 11 0 chr6 151782315 151782506 -30632736 - AluSg/x SINE Alu -32 280 88 195 359 21 21 chr6 151782639 151782781 -30632461 + L2 LINE L2 3118 3259 -54 389 215 74 8 chr6 151783930 151784051 -30631191 - Charlie7 DNA MER1_type -2464 148 20 430 292 99 23 chr6 151784273 151784444 -30630798 + MER5A DNA MER1_type 1 184 -5 317 324 7 29 chr6 151785642 151785778 -30629464 - MIR SINE MIR -101 161 29 21 0 0 0 chr6 151785889 151785910 -30629332 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 151785943 151785964 -30629278 + AT_rich Low_complexity Low_complexity 1 21 0 325 209 19 76 chr6 151787785 151787943 -30627299 - L1ME4a LINE L1 -16 6105 5957 28 79 0 0 chr6 151788044 151788107 -30627135 + AT_rich Low_complexity Low_complexity 1 63 0 11502 181 17 21 chr6 151788120 151791016 -30624226 - L1PA13 LINE L1 -18 7583 4675 2417 84 0 0 chr6 151791016 151791327 -30623915 - AluY SINE Alu 0 311 1 11502 181 17 21 chr6 151791327 151791361 -30623881 - L1PA13 LINE L1 -2926 4675 4642 429 36 0 0 chr6 151791361 151791416 -30623826 + (TA)n Simple_repeat Simple_repeat 1 55 0 11502 181 17 21 chr6 151791416 151791758 -30623484 - L1PA13 LINE L1 -2959 4642 4327 8211 144 14 4 chr6 151791774 151793217 -30622025 - L1PA13 LINE L1 -4425 3159 1698 347 316 37 42 chr6 151793317 151793880 -30621362 - L1PA12 LINE L1 -5501 2080 1597 1249 128 31 18 chr6 151793884 151794111 -30621131 - L1PA12 LINE L1 -7350 231 2 3390 152 32 3 chr6 151794322 151795378 -30619864 - L1M2 LINE L1 -498 5793 4702 1244 174 30 7 chr6 151795377 151795675 -30619567 + L1M2 LINE L1 4391 4695 -1451 * 30 45 0 0 chr6 151795709 151795753 -30619489 + AT_rich Low_complexity Low_complexity 1 44 0 559 309 37 5 chr6 151795975 151796166 -30619076 + L2 LINE L2 1522 1718 -1596 31 0 0 0 chr6 151797587 151797618 -30617624 + AT_rich Low_complexity Low_complexity 1 31 0 186 209 0 0 chr6 151797765 151797808 -30617434 + CT-rich Low_complexity Low_complexity 1 43 0 256 351 37 15 chr6 151797888 151798159 -30617083 - L1ME2 LINE L1 -242 6158 5882 185 62 0 31 chr6 151798291 151798323 -30616919 + (CTATT)n Simple_repeat Simple_repeat 2 32 0 226 293 40 0 chr6 151798462 151798537 -30616705 - L1ME2 LINE L1 -2163 5881 5804 242 161 54 0 chr6 151798543 151798599 -30616643 - HsTC2 DNA Tc2 -1827 71 13 229 299 121 21 chr6 151798610 151798891 -30616351 - L1ME2 LINE L1 -877 5505 5197 13957 192 32 11 chr6 151798982 151799362 -30615880 - L1PB1 LINE L1 -1 6866 6496 309 51 0 0 chr6 151799362 151799401 -30615841 + (TG)n Simple_repeat Simple_repeat 2 40 0 13957 192 32 11 chr6 151799401 151803770 -30611472 - L1PB1 LINE L1 -371 6496 1805 2158 127 0 3 chr6 151803770 151804070 -30611172 - AluSg SINE Alu -11 299 1 13957 192 32 11 chr6 151804070 151805909 -30609333 - L1PB1 LINE L1 -5062 1805 6 427 265 20 13 chr6 151806123 151806274 -30608968 - L1ME2 LINE L1 -1499 4883 4732 1362 261 44 21 chr6 151806307 151806789 -30608453 + L1MC4a LINE L1 7316 7808 0 577 275 52 83 chr6 151806837 151807244 -30607998 - L1ME2 LINE L1 -2091 4291 3898 231 310 13 26 chr6 151807421 151807576 -30607666 - L1ME2 LINE L1 -4814 1570 1418 509 283 27 85 chr6 151807589 151808305 -30606937 - L1ME2 LINE L1 -4892 1480 807 1939 192 25 40 chr6 151808305 151808779 -30606463 + MLT1C LTR MaLR 1 467 0 509 283 27 85 chr6 151808779 151808800 -30606442 - L1ME2 LINE L1 -5565 807 786 25 65 0 0 chr6 151809811 151809857 -30605385 + AT_rich Low_complexity Low_complexity 1 46 0 383 300 82 0 chr6 151812533 151812703 -30602539 + LTR33 LTR ERVL 7 190 -331 237 179 0 0 chr6 151812783 151812822 -30602420 + LTR33 LTR ERVL 328 366 -155 709 255 85 60 chr6 151812867 151813185 -30602057 - LTR16A LTR ERVL 0 450 125 548 292 0 0 chr6 151813609 151813770 -30601472 - ERVL LTR ERVL -730 5034 4874 723 324 30 59 chr6 151814024 151814549 -30600693 - ERVL LTR ERVL -1036 4618 4109 25 65 0 0 chr6 151815227 151815273 -30599969 + AT_rich Low_complexity Low_complexity 1 46 0 265 316 0 7 chr6 151816014 151816104 -30599138 + CT-rich Low_complexity Low_complexity 4 151 0 21 0 0 0 chr6 151816332 151816353 -30598889 + AT_rich Low_complexity Low_complexity 1 21 0 1185 155 4 75 chr6 151816446 151816711 -30598531 + MLT2B2 LTR ERVL 1 246 -269 293 380 23 0 chr6 151816853 151816982 -30598260 + ERVL LTR ERVL 4149 4280 -1484 1190 212 18 35 chr6 151817135 151817443 -30597799 + MLT2B2 LTR ERVL 245 513 -2 883 283 41 12 chr6 151817632 151817876 -30597366 + L2 LINE L2 2107 2357 -957 921 232 27 13 chr6 151817876 151818172 -30597070 - MSTD LTR MaLR -9 387 1 1025 252 59 18 chr6 151818232 151818518 -30596724 + L2 LINE L2 2484 2781 -533 309 313 18 9 chr6 151818532 151818644 -30596598 + L2 LINE L2 2976 3088 -225 290 109 22 0 chr6 151818741 151818787 -30596455 - MLT2B2 LTR ERVL -6 509 463 548 205 12 82 chr6 151818790 151818961 -30596281 + L2 LINE L2 3150 3308 -5 443 288 47 64 chr6 151819069 151819302 -30595940 + MLT1I LTR MaLR 101 329 -80 626 164 100 24 chr6 151820946 151821086 -30594156 + THE1C LTR MaLR 3 147 -238 1934 177 0 18 chr6 151821121 151821449 -30593793 + THE1C-int LTR MaLR 616 937 -643 * 2729 130 10 14 chr6 151821433 151821848 -30593394 + THE1C-int LTR MaLR 1168 1580 0 1703 164 74 47 chr6 151821848 151822213 -30593029 + THE1C LTR MaLR 1 375 0 1146 170 35 26 chr6 151822707 151822937 -30592305 - AluSx SINE Alu 0 312 81 2734 108 0 50 chr6 151822937 151823334 -30591908 + MER48 LTR ERV1 1 377 -10 26734 108 34 10 chr6 151823334 151827365 -30587877 + HERVH48 LTR ERV1 1 4128 -2526 14589 91 18 2 chr6 151827342 151829297 -30585945 + HERVH48 LTR ERV1 4668 6654 0 * 2383 111 75 54 chr6 151829301 151829688 -30585554 + MER48 LTR ERV1 4 398 0 474 229 12 0 chr6 151829688 151829771 -30585471 - AluSx SINE Alu -228 85 2 245 75 25 0 chr6 151830183 151830223 -30585019 + (CA)n Simple_repeat Simple_repeat 2 42 0 1760 183 0 16 chr6 151831180 151831492 -30583750 + AluJb SINE Alu 1 307 -5 512 276 117 68 chr6 151831703 151832113 -30583129 + LTR33 LTR ERVL 14 443 -78 186 286 111 0 chr6 151832712 151832775 -30582467 + MIR SINE MIR 37 106 -102 24 32 0 0 chr6 151834274 151834305 -30580937 + AT_rich Low_complexity Low_complexity 1 31 0 1022 145 0 25 chr6 151836444 151836603 -30578639 - Tigger2 DNA MER2_type 0 2718 2564 699 210 72 0 chr6 151836614 151836781 -30578461 - Tigger2 DNA MER2_type -2539 179 1 283 113 19 19 chr6 151836781 151836828 -30578414 + MLT2B1 LTR ERVL 474 520 0 5395 102 71 38 chr6 151838591 151839435 -30575807 + MER4D LTR ERV1 1 872 0 1599 206 33 34 chr6 151840101 151840454 -30574788 + MLT1A1 LTR MaLR 3 396 0 222 179 9 47 chr6 151842584 151842690 -30572552 + (TA)n Simple_repeat Simple_repeat 2 103 0 506 132 0 0 chr6 151842690 151842766 -30572476 + MLT2B1 LTR ERVL 1 76 -439 5915 157 34 6 chr6 151842766 151843245 -30571997 + L1MA5 LINE L1 4819 5283 -1017 285 29 0 0 chr6 151843245 151843279 -30571963 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5915 157 34 6 chr6 151843279 151844245 -30570997 + L1MA5 LINE L1 5283 6297 -3 2378 201 14 2 chr6 151844271 151844715 -30570527 + MLT2B1 LTR ERVL 72 520 0 186 43 0 0 chr6 151844810 151844833 -30570409 + (CATA)n Simple_repeat Simple_repeat 3 25 0 248 290 0 58 chr6 151845853 151845922 -30569320 - L2 LINE L2 -3 3310 3246 7967 40 0 0 chr6 151846166 151847245 -30567997 - L1PA5 LINE L1 0 6154 5076 1751 149 10 137 chr6 151848571 151848807 -30566435 - MLT1A1 LTR MaLR -1 364 202 2217 133 3 0 chr6 151848807 151849116 -30566126 - AluSx SINE Alu -2 310 1 1751 149 10 137 chr6 151849116 151849296 -30565946 - MLT1A1 LTR MaLR -163 202 1 213 211 0 0 chr6 151849388 151849426 -30565816 + (CA)n Simple_repeat Simple_repeat 2 39 0 2306 110 0 3 chr6 151849757 151850091 -30565151 + AluSq SINE Alu 1 333 0 1815 157 0 11 chr6 151850615 151850957 -30564285 + AluJb SINE Alu 1 339 0 245 320 133 0 chr6 151850985 151851107 -30564135 + MIR SINE MIR 35 173 -63 2398 135 71 92 chr6 151851519 151852095 -30563147 - MER4B LTR ERV1 -46 564 1 2056 121 10 0 chr6 151852250 151852555 -30562687 + AluSx SINE Alu 1 308 -4 446 320 16 48 chr6 151852797 151853047 -30562195 + MLT1K LTR MaLR 339 580 -8 385 333 58 6 chr6 151854548 151854704 -30560538 + MER5A DNA MER1_type 26 189 0 4072 121 13 0 chr6 151858292 151858839 -30556403 + MER41A LTR ERV1 1 554 0 4631 142 12 14 chr6 151858839 151859458 -30555784 + MER41A-int LTR ERV1 1 620 -5326 2071 136 80 14 chr6 151859458 151859810 -30555432 + THE1C LTR MaLR 1 375 0 10656 129 39 7 chr6 151859810 151861341 -30553901 + THE1C-int LTR MaLR 1 1580 0 2214 126 67 14 chr6 151861341 151861697 -30553545 + THE1C LTR MaLR 1 375 0 4631 142 12 14 chr6 151861697 151861767 -30553475 + MER41A-int LTR ERV1 617 690 -5256 2229 143 57 0 chr6 151861768 151862119 -30553123 + MER41A-int LTR ERV1 1392 1762 -4184 775 129 61 48 chr6 151862123 151862270 -30552972 + MER41A-int LTR ERV1 2481 2629 -4908 * 4824 123 52 9 chr6 151862266 151863014 -30552228 + MER41-int LTR ERV1 2167 2946 -3000 2294 107 30 84 chr6 151863001 151863082 -30552160 + MER41-int LTR ERV1 3300 3384 -2562 * 197 33 33 0 chr6 151863082 151863112 -30552130 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 2294 107 30 84 chr6 151863112 151863469 -30551773 + MER41-int LTR ERV1 3384 3714 -2232 43652 40 2 5 chr6 151863480 151869634 -30545608 + L1PA3 LINE L1 13 6150 -5 197 231 0 0 chr6 151869703 151869742 -30545500 - L2 LINE L2 -4 3309 3271 12160 108 25 11 chr6 151869875 151871735 -30543507 + MER41A-int LTR ERV1 2426 5943 -3 3955 100 5 0 chr6 151871735 151872286 -30542956 + MER41A LTR ERV1 1 554 0 782 138 8 15 chr6 151873205 151873335 -30541907 - THE1C LTR MaLR -246 129 1 * 2409 142 22 42 chr6 151873335 151873640 -30541602 + LTR59 LTR ERV1 151 446 -151 2557 102 6 0 chr6 151873640 151873993 -30541249 + THE1A LTR MaLR 1 355 0 2409 142 22 42 chr6 151873993 151874137 -30541105 + LTR59 LTR ERV1 446 591 -6 2539 263 48 51 chr6 151874158 151874570 -30540672 + L1ME2 LINE L1 977 1389 -4826 333 0 0 0 chr6 151874570 151874607 -30540635 + (CA)n Simple_repeat Simple_repeat 2 38 0 2539 263 48 51 chr6 151874607 151874724 -30540518 + L1ME2 LINE L1 1389 1505 -4710 2057 117 93 3 chr6 151874724 151875058 -30540184 - THE1B LTR MaLR 0 364 1 2539 263 48 51 chr6 151875058 151875364 -30539878 + L1ME2 LINE L1 1505 1810 -4405 1852 115 0 11 chr6 151875364 151875625 -30539617 + AluSc SINE Alu 39 296 -13 2539 263 48 51 chr6 151875625 151877145 -30538097 + L1ME2 LINE L1 1810 3277 -2938 397 215 28 0 chr6 151877142 151877249 -30537993 + L1ME2 LINE L1 4166 4275 -1940 * 4786 175 54 5 chr6 151877257 151878881 -30536361 - L1PA16 LINE L1 -10 6156 4411 2454 244 73 48 chr6 151878890 151879710 -30535532 + L1ME2 LINE L1 4270 5068 -1165 2188 119 0 0 chr6 151879710 151880005 -30535237 + AluSx SINE Alu 1 295 -17 2454 244 73 48 chr6 151880005 151881080 -30534162 + L1ME2 LINE L1 5068 6214 -19 752 246 53 50 chr6 151881091 151881392 -30533850 + L1MC4 LINE L1 6352 6653 -1389 * 2217 231 97 23 chr6 151881366 151882231 -30533011 + L1MC4 LINE L1 7068 8042 0 1850 155 17 3 chr6 151882308 151882598 -30532644 - AluSx SINE Alu -18 294 1 1025 211 71 71 chr6 151882837 151883188 -30532054 - MLT1D LTR MaLR -154 351 1 1022 188 144 39 chr6 151885864 151885991 -30529251 + AluJo SINE Alu 3 115 -187 2222 121 0 0 chr6 151885991 151886289 -30528953 + AluSx SINE Alu 1 298 -14 1022 188 144 39 chr6 151886289 151886417 -30528825 + AluJo SINE Alu 115 285 -17 517 224 7 7 chr6 151886417 151886569 -30528673 + (TA)n Simple_repeat Simple_repeat 1 152 0 369 0 0 0 chr6 151886569 151886610 -30528632 + (TG)n Simple_repeat Simple_repeat 2 42 0 317 333 25 25 chr6 151886617 151886737 -30528505 - MIR SINE MIR -123 139 20 497 326 165 42 chr6 151886973 151887836 -30527406 + L2 LINE L2 1532 2580 -734 3818 119 35 10 chr6 151887836 151888433 -30526809 + L1PA16 LINE L1 5546 6157 -9 497 326 165 42 chr6 151888433 151888746 -30526496 + L2 LINE L2 2580 2853 -461 419 361 61 44 chr6 151888818 151889114 -30526128 + L2 LINE L2 2970 3270 -2 5064 109 20 24 chr6 151889291 151890088 -30525154 - L1PA14 LINE L1 -2 6159 5366 195 250 0 0 chr6 151890644 151890696 -30524546 + (CATA)n Simple_repeat Simple_repeat 2 53 0 1917 161 0 35 chr6 151891268 151891584 -30523658 - AluJb SINE Alu -7 305 1 205 210 81 32 chr6 151891887 151892011 -30523231 + (TTTAA)n Simple_repeat Simple_repeat 2 131 0 637 317 82 26 chr6 151892026 151892329 -30522913 + MER102a DNA MER1_type 1 320 -10 2217 122 3 0 chr6 151893324 151893627 -30521615 - AluSq SINE Alu -9 304 1 354 278 256 0 chr6 151893976 151894167 -30521075 - L2 LINE L2 -157 3156 2917 306 342 97 10 chr6 151894669 151894865 -30520377 - L2 LINE L2 -783 2531 2319 518 260 73 11 chr6 151894866 151895043 -30520199 - MER5A DNA MER1_type 0 189 2 767 221 103 8 chr6 151895332 151895594 -30519648 - MER33 DNA MER1_type -1 323 37 2215 214 15 55 chr6 151895940 151896430 -30518812 + MLT2B2 LTR ERVL 1 470 -45 613 87 10 10 chr6 151896430 151896533 -30518709 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 2215 214 15 55 chr6 151896533 151896574 -30518668 + MLT2B2 LTR ERVL 470 511 -4 3076 275 44 42 chr6 151896664 151897573 -30517669 + L1MEc LINE L1 36 942 -5454 1174 206 127 26 chr6 151897573 151897913 -30517329 - MLT1A2 LTR MaLR 0 374 1 3076 275 44 42 chr6 151897913 151898013 -30517229 + L1MEc LINE L1 942 1040 -5356 2069 133 0 7 chr6 151898013 151898314 -30516928 - AluSx SINE Alu -13 299 1 3076 275 44 42 chr6 151898314 151898691 -30516551 + L1MEc LINE L1 1040 1426 -4970 939 194 12 81 chr6 151898696 151899016 -30516226 - MLT1B LTR MaLR -2 386 4 460 281 33 0 chr6 151899033 151899186 -30516056 + HAL1 LINE L1 1425 1582 -925 230 160 413 0 chr6 151899858 151899933 -30515309 - MIR3 SINE MIR -2 206 101 276 318 39 47 chr6 151900000 151900129 -30515113 + MIR SINE MIR 20 147 -115 1415 194 81 64 chr6 151901219 151901641 -30513601 - MLT1D LTR MaLR -72 433 5 655 225 35 0 chr6 151901644 151901813 -30513429 + L1M4 LINE L1 4866 5040 -1106 297 293 0 0 chr6 151902738 151902820 -30512422 + MER103 DNA DNA 38 119 -47 1673 166 26 0 chr6 151905912 151906203 -30509039 + AluJb SINE Alu 11 308 0 2560 41 0 0 chr6 151906584 151906879 -30508363 - AluY SINE Alu -16 295 1 448 344 58 21 chr6 151907067 151907308 -30507934 + MIR SINE MIR 13 262 0 303 298 124 19 chr6 151907539 151907700 -30507542 + L2 LINE L2 2142 2319 -995 189 308 0 0 chr6 151908396 151908448 -30506794 - L2 LINE L2 -1 3271 3220 2052 176 32 58 chr6 151908841 151909306 -30505936 + MLT1C LTR MaLR 15 467 0 3975 178 94 50 chr6 151909923 151910115 -30505127 - MER45B DNA AcHobo -541 1040 858 1811 126 79 7 chr6 151910115 151910392 -30504850 + AluSg SINE Alu 1 297 -13 3975 178 94 50 chr6 151910392 151911195 -30504047 - MER45B DNA AcHobo -723 858 1 292 319 43 0 chr6 151911195 151911289 -30503953 + MIR SINE MIR 52 149 -59 410 244 109 17 chr6 151911386 151911505 -30503737 + L2 LINE L2 3183 3312 -1 315 250 62 21 chr6 151911775 151911871 -30503371 + MER102a DNA MER1_type 231 330 0 261 294 10 20 chr6 151912515 151912617 -30502625 + (TA)n Simple_repeat Simple_repeat 1 101 0 253 345 0 0 chr6 151913604 151913749 -30501493 + T-rich Low_complexity Low_complexity 1 145 0 273 305 65 39 chr6 151914068 151914222 -30501020 + MIR3 SINE MIR 6 163 -45 189 0 0 0 chr6 151914265 151914286 -30500956 + (CAT)n Simple_repeat Simple_repeat 3 23 0 1601 138 0 16 chr6 151915385 151915631 -30499611 + AluSx SINE Alu 39 280 -32 441 0 0 0 chr6 151915631 151915680 -30499562 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 979 324 59 49 chr6 151916692 151917408 -30497834 + L1MEc LINE L1 39 761 -5635 203 232 37 0 chr6 151917437 151917519 -30497723 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 186 85 43 21 chr6 151917526 151917573 -30497669 + (TA)n Simple_repeat Simple_repeat 2 49 0 207 0 0 0 chr6 151917600 151917623 -30497619 + (GA)n Simple_repeat Simple_repeat 2 24 0 402 236 99 12 chr6 151917642 151917803 -30497439 + L1MEc LINE L1 788 962 -5434 255 328 49 22 chr6 151917978 151918161 -30497081 + MIR SINE MIR 29 216 -46 498 181 208 13 chr6 151918747 151918896 -30496346 - MLT2F LTR ERVL 0 663 486 1070 174 0 5 chr6 151918901 151919223 -30496019 + MLT1A1 LTR MaLR 1 365 0 782 256 27 39 chr6 151919229 151919487 -30495755 - MLT2F LTR ERVL -192 471 217 186 317 0 106 chr6 151919522 151919626 -30495616 - L3 LINE CR1 -5 1572 1480 1509 158 6 84 chr6 151919997 151920320 -30494922 + AluJo SINE Alu 11 308 -4 180 0 0 0 chr6 151920946 151920966 -30494276 + (T)n Simple_repeat Simple_repeat 1 20 0 1491 215 24 29 chr6 151921242 151921618 -30493624 - MLT1A2 LTR MaLR 0 374 1 1771 201 39 18 chr6 151921618 151922006 -30493236 - MLT1A2-int LTR MaLR 0 1735 1340 2958 88 0 0 chr6 151922007 151922407 -30492835 + MLT2A1 LTR ERVL 1 400 -44 383 106 75 6 chr6 151922409 151922570 -30492672 + (TA)n Simple_repeat Simple_repeat 1 172 0 282 62 83 0 chr6 151922570 151922618 -30492624 + MLT2A1 LTR ERVL 393 444 0 340 250 0 0 chr6 151922810 151922898 -30492344 - MLT1A2-int LTR MaLR -969 766 679 282 235 0 0 chr6 151922957 151923025 -30492217 - MLT1E3-int LTR MaLR -484 887 820 1773 183 6 98 chr6 151923034 151923504 -30491738 - MLT1E3-int LTR MaLR -706 665 239 811 228 16 28 chr6 151923509 151923759 -30491483 - MLT2D LTR ERVL -167 247 1 187 191 24 0 chr6 151923829 151923871 -30491371 - L2 LINE L2 0 3313 3271 1087 138 24 6 chr6 151924834 151925001 -30490241 + AluJ SINE Alu 1 170 -142 644 163 10 0 chr6 151925035 151925133 -30490109 + AluJ SINE Alu 170 268 -44 1014 117 11 11 chr6 151925164 151925344 -30489898 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 302 93 37 0 chr6 151925344 151925398 -30489844 + GA-rich Low_complexity Low_complexity 3 58 0 507 259 205 0 chr6 151926360 151926545 -30488697 + MIR SINE MIR 29 251 -11 327 278 74 31 chr6 151926581 151926743 -30488499 + L1ME3A LINE L1 5987 6155 -15 3942 206 70 25 chr6 151926769 151927937 -30487305 - Charlie1 DNA MER1_type -1 2760 1540 7707 131 21 18 chr6 151928398 151929694 -30485548 + HSMAR2 DNA Mariner 2 1301 -1 333 0 0 0 chr6 151929754 151929791 -30485451 + (CA)n Simple_repeat Simple_repeat 1 37 0 1340 211 27 45 chr6 151930158 151930494 -30484748 - MLT1E3 LTR MaLR 0 624 295 760 213 14 71 chr6 151930521 151930732 -30484510 - MER90 LTR ERV1 -344 270 72 2285 97 3 7 chr6 151931910 151932209 -30483033 + AluSx SINE Alu 1 298 -14 382 274 82 7 chr6 151932242 151932388 -30482854 - L2 LINE L2 -220 3052 2896 237 323 170 0 chr6 151933883 151934093 -30481149 - MIR SINE MIR -3 259 17 22 35 0 0 chr6 151934942 151934971 -30480271 + AT_rich Low_complexity Low_complexity 1 29 0 587 281 73 6 chr6 151935314 151935492 -30479750 + MIR SINE MIR 16 205 -57 181 263 0 0 chr6 151935763 151935801 -30479441 + L2 LINE L2 3182 3219 -94 3490 62 0 7 chr6 151935968 151936419 -30478823 + LTR7 LTR ERV1 1 448 -2 204 254 0 55 chr6 151936618 151936673 -30478569 + MIR3 SINE MIR 118 169 -39 224 77 26 0 chr6 151936683 151936722 -30478520 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2058 121 0 3 chr6 151936724 151937006 -30478236 - AluSx SINE Alu -30 282 2 23 0 0 0 chr6 151937277 151937300 -30477942 + AT_rich Low_complexity Low_complexity 1 23 0 1904 120 0 18 chr6 151937669 151937976 -30477266 + AluSx SINE Alu 4 305 0 1649 164 14 7 chr6 151938343 151938629 -30476613 - AluSx SINE Alu -22 290 3 2464 138 79 71 chr6 151939272 151939902 -30475340 + L1MA6 LINE L1 5659 6293 -7 290 366 68 30 chr6 151941969 151942305 -30472937 + L2 LINE L2 163 511 -2803 746 269 60 60 chr6 151943607 151943856 -30471386 + MIR SINE MIR 14 262 0 2129 123 58 87 chr6 151944295 151944705 -30470537 - MLT1C LTR MaLR 0 467 72 2784 142 2 2 chr6 151944705 151945143 -30470099 - L1PA16 LINE L1 -15 6151 5714 2129 123 58 87 chr6 151945143 151945213 -30470029 - MLT1C LTR MaLR -395 72 1 805 253 58 64 chr6 151945289 151945755 -30469487 - LTR37B LTR ERV1 -2 466 4 1160 236 31 111 chr6 151945940 151946766 -30468476 - MER31-int LTR ERV1 -828 4108 3349 2199 134 37 11 chr6 151946832 151947212 -30468030 - MLT1B LTR MaLR 0 390 1 1807 101 13 62 chr6 151947246 151947554 -30467688 - L1MA3 LINE L1 -6 6299 6007 1694 199 0 28 chr6 151948047 151948368 -30466874 - AluJo SINE Alu 0 312 1 2003 157 118 18 chr6 151948910 151949299 -30465943 - MSTA LTR MaLR 0 428 1 748 229 10 20 chr6 151949340 151949541 -30465701 + L1MEc LINE L1 38 236 -6160 * 1030 272 43 10 chr6 151949537 151949953 -30465289 + L1M4 LINE L1 3480 3909 -2237 931 259 101 21 chr6 151949961 151950474 -30464768 + L1M4 LINE L1 3962 4515 -1631 265 260 0 0 chr6 151951191 151951268 -30463974 + A-rich Low_complexity Low_complexity 1 77 0 739 179 82 77 chr6 151951441 151951472 -30463770 - LTR37B LTR ERV1 -7 461 432 1996 164 37 3 chr6 151951472 151951825 -30463417 - MLT1A1 LTR MaLR 0 365 1 739 179 82 77 chr6 151951825 151952133 -30463109 - LTR37B LTR ERV1 -36 432 120 1850 158 134 13 chr6 151952133 151952513 -30462729 - MSTA LTR MaLR 0 428 3 395 69 0 35 chr6 151952517 151952575 -30462667 - THE1B LTR MaLR -8 356 301 2137 109 0 9 chr6 151952604 151952925 -30462317 - THE1B LTR MaLR -46 318 1 274 253 11 35 chr6 151953558 151953645 -30461597 - L2 LINE L2 -6 3266 3182 198 0 0 0 chr6 151955770 151955792 -30459450 + (CA)n Simple_repeat Simple_repeat 1 22 0 494 292 4 86 chr6 151957530 151957573 -30457669 + MIR SINE MIR 47 92 -170 2211 146 22 6 chr6 151957573 151957929 -30457313 + THE1B LTR MaLR 1 362 -2 494 292 4 86 chr6 151957929 151958118 -30457124 + MIR SINE MIR 92 260 -2 809 256 199 6 chr6 151958258 151958570 -30456672 + MLT1J LTR MaLR 2 373 -138 183 288 34 51 chr6 151960052 151960111 -30455131 + L2 LINE L2 3238 3295 -18 1717 153 36 9 chr6 151960128 151960461 -30454781 + L1MA6 LINE L1 5954 6295 -5 364 315 49 28 chr6 151960602 151960745 -30454497 - L2 LINE L2 0 3313 3168 501 276 56 22 chr6 151962002 151962270 -30452972 + MLT1J2 LTR MaLR 1 277 -173 244 317 21 21 chr6 151963703 151963848 -30451394 + GA-rich Low_complexity Low_complexity 2 146 0 258 105 0 0 chr6 151964850 151964888 -30450354 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 219 289 31 41 chr6 151965663 151965760 -30449482 + MIR SINE MIR 48 143 -119 1221 160 0 47 chr6 151966372 151966584 -30448658 - AluJo SINE Alu -22 290 89 469 235 98 30 chr6 151967329 151967461 -30447781 - L2 LINE L2 -1 3312 3172 321 258 20 66 chr6 151967487 151967638 -30447604 + MIR SINE MIR 84 227 -35 522 219 39 47 chr6 151967674 151967802 -30447440 + L2 LINE L2 3186 3312 -1 280 270 54 0 chr6 151967883 151967957 -30447285 - L2 LINE L2 -336 2977 2900 1626 147 7 42 chr6 151968904 151969189 -30446053 + AluJb SINE Alu 1 275 -37 528 30 0 0 chr6 151969189 151969255 -30445987 + (TC)n Simple_repeat Simple_repeat 2 67 0 330 87 0 0 chr6 151969254 151969300 -30445942 + (TA)n Simple_repeat Simple_repeat 1 46 0 * 202 257 222 28 chr6 151969452 151969596 -30445646 + MIR3 SINE MIR 32 203 -5 2554 131 19 6 chr6 151971692 151972051 -30443191 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr6 151972902 151972923 -30442319 + AT_rich Low_complexity Low_complexity 1 21 0 478 284 175 0 chr6 151974058 151974241 -30441001 + L3 LINE CR1 581 795 -782 411 330 165 31 chr6 151974246 151974470 -30440772 + L2 LINE L2 2992 3245 -27 193 303 30 0 chr6 151974744 151974810 -30440432 + L3 LINE CR1 1105 1172 -405 1903 209 6 0 chr6 151974855 151975218 -30440024 - L1MB1 LINE L1 -1120 5026 4662 4934 152 19 33 chr6 151975228 151976320 -30438922 + L1MB1 LINE L1 5045 6122 -67 2195 96 3 3 chr6 151976320 151976613 -30438629 + AluSx SINE Alu 3 295 -17 4934 152 19 33 chr6 151976613 151976649 -30438593 + L1MB1 LINE L1 6122 6157 -32 25 37 0 37 chr6 151976649 151976688 -30438554 + AT_rich Low_complexity Low_complexity 1 39 -13 2750 100 16 11 chr6 151976688 151977069 -30438173 - L1PA10 LINE L1 -5 6163 5781 25 37 0 37 chr6 151977069 151977083 -30438159 + AT_rich Low_complexity Low_complexity 39 52 0 639 147 162 0 chr6 151977117 151977253 -30437989 + L1MA10 LINE L1 6175 6332 -2 626 302 10 20 chr6 151977256 151977458 -30437784 + L3 LINE CR1 1218 1417 -160 204 179 0 0 chr6 151977581 151977620 -30437622 + (CA)n Simple_repeat Simple_repeat 1 39 0 333 257 22 29 chr6 151977628 151977764 -30437478 + L1ME4a LINE L1 5984 6118 -3 228 280 89 89 chr6 151977774 151977942 -30437300 + L3 LINE CR1 1401 1568 -9 277 215 123 0 chr6 151978025 151978090 -30437152 - L3 LINE CR1 -1 1576 1504 602 194 139 24 chr6 151979096 151979261 -30435981 + MER5A DNA MER1_type 6 189 0 237 286 76 19 chr6 151984840 151984945 -30430297 + MIR SINE MIR 36 146 -62 226 143 191 0 chr6 151985484 151985526 -30429716 + MER74B LTR ERVL 4 53 -569 1186 213 75 24 chr6 151985606 151985981 -30429261 + MER74B LTR ERVL 208 601 -21 566 246 8 8 chr6 151986115 151986249 -30428993 - MER94 DNA DNA 0 134 1 236 254 183 24 chr6 151986632 151986758 -30428484 - L2 LINE L2 0 3313 3168 252 301 27 0 chr6 151987666 151987739 -30427503 - MIR3 SINE MIR -6 202 128 596 333 78 0 chr6 151988199 151988430 -30426812 - MIR SINE MIR -8 254 6 715 114 9 0 chr6 151988548 151988653 -30426589 - L1MA9 LINE L1 0 6312 6207 350 175 0 0 chr6 151988826 151988883 -30426359 + AluJ/FLAM SINE Alu 1 57 -245 27 0 0 0 chr6 151988883 151988910 -30426332 + AT_rich Low_complexity Low_complexity 1 27 0 2007 198 55 22 chr6 151989980 151990435 -30424807 + MLT1D LTR MaLR 36 505 0 425 251 183 17 chr6 151991263 151991438 -30423804 - MIR SINE MIR 0 262 59 352 108 0 0 chr6 151994184 151994238 -30421004 + MLT2D LTR ERVL 366 412 -2 373 269 61 61 chr6 151994268 151994480 -30420762 + L1MDa LINE L1 1510 1721 -4819 346 287 19 13 chr6 151994492 151994649 -30420593 + L1M4 LINE L1 3 160 -6382 297 241 25 25 chr6 151994664 151994743 -30420499 + L1M4 LINE L1 824 902 -5640 2829 188 32 4 chr6 151994746 151995306 -30419936 + L1MB4 LINE L1 5514 6089 -91 267 315 65 16 chr6 151995331 151995515 -30419727 + L1M4 LINE L1 1718 1910 -4734 5788 96 1 1 chr6 151995518 151996300 -30418942 - L1PA12 LINE L1 0 6168 5387 816 143 0 8 chr6 151996306 151996432 -30418810 - FLAM_C SINE Alu -18 125 1 2246 101 0 19 chr6 151997185 151997493 -30417749 + AluSg SINE Alu 1 302 -8 498 290 77 0 chr6 151998636 151998791 -30416451 - MIR3 SINE MIR -41 167 1 635 286 41 6 chr6 151999370 151999541 -30415701 + MER5B DNA MER1_type 2 178 0 1705 133 48 20 chr6 152000083 152000377 -30414865 - AluJo SINE Alu -6 306 5 207 0 0 0 chr6 152000775 152000798 -30414444 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 187 325 13 39 chr6 152000908 152000985 -30414257 + MIR SINE MIR 33 107 -101 219 213 21 0 chr6 152002598 152002645 -30412597 + MIR SINE MIR 59 106 -156 2445 144 37 0 chr6 152002650 152003054 -30412188 + MSTB1 LTR MaLR 1 419 -13 1358 238 36 88 chr6 152003079 152003592 -30411650 - L1MC4 LINE L1 -377 7665 7184 2423 91 0 0 chr6 152003592 152003889 -30411353 - AluSg SINE Alu -13 297 1 1358 238 36 88 chr6 152003889 152003954 -30411288 - L1MC4 LINE L1 -858 7184 7117 5155 257 34 63 chr6 152004114 152004520 -30410722 - L1MEc LINE L1 -4307 2089 1673 1720 143 75 0 chr6 152004520 152004800 -30410442 - AluJb SINE Alu -11 301 1 5155 257 34 63 chr6 152004800 152006524 -30408718 - L1MEc LINE L1 -4723 1673 22 1606 253 102 75 chr6 152006507 152007486 -30407756 - L1MC4a LINE L1 -937 6871 5866 * 294 302 9 19 chr6 152007486 152007592 -30407650 - L2 LINE L2 -966 2348 2244 197 241 93 0 chr6 152008295 152008349 -30406893 - L2 LINE L2 -76 3237 3179 228 35 0 0 chr6 152008548 152008577 -30406665 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 371 70 53 0 chr6 152008579 152008636 -30406606 - L1PA4 LINE L1 -8 6147 6088 2255 111 0 3 chr6 152008757 152009063 -30406179 - AluSq SINE Alu -8 305 1 568 308 4 53 chr6 152009853 152010027 -30405215 - MIR SINE MIR 0 262 104 2209 120 0 3 chr6 152010027 152010327 -30404915 + AluSq SINE Alu 1 299 -14 568 308 4 53 chr6 152010327 152010415 -30404827 - MIR SINE MIR -158 104 13 571 307 30 5 chr6 152010552 152010763 -30404479 + MIR SINE MIR 15 233 -29 1611 194 0 3 chr6 152010784 152011073 -30404169 - AluJo SINE Alu -24 288 1 1706 154 3 28 chr6 152011076 152011385 -30403857 - AluJo SINE Alu 0 308 7 192 329 71 0 chr6 152011891 152011961 -30403281 - MIR3 SINE MIR -48 160 86 216 97 0 0 chr6 152012518 152012549 -30402693 - L2 LINE L2 -9 3304 3274 1695 174 43 89 chr6 152013955 152014128 -30401114 + MLT1A2 LTR MaLR 1 180 -194 1749 186 0 16 chr6 152014128 152014439 -30400803 + AluJb SINE Alu 1 306 -6 1695 174 43 89 chr6 152014439 152014657 -30400585 + MLT1A2 LTR MaLR 180 374 0 577 304 88 15 chr6 152017004 152017264 -30397978 + L2 LINE L2 2430 2708 -606 3471 245 85 48 chr6 152017280 152017794 -30397448 + L1MC4 LINE L1 6545 7039 -956 2067 117 3 3 chr6 152017794 152018116 -30397126 + AluSx SINE Alu 1 322 0 1688 191 3 13 chr6 152018118 152018422 -30396820 + AluJo SINE Alu 1 301 -11 3471 245 85 48 chr6 152018422 152019106 -30396136 + L1MC4 LINE L1 7039 7755 -240 1512 216 52 111 chr6 152019106 152019658 -30395584 - MLT2B1 LTR ERVL 0 520 1 3471 245 85 48 chr6 152019658 152019909 -30395333 + L1MC4 LINE L1 7755 7995 0 607 301 186 32 chr6 152020009 152020199 -30395043 + L2 LINE L2 2812 2971 -342 2276 115 175 6 chr6 152020199 152020565 -30394677 - MSTA LTR MaLR 0 428 1 607 301 186 32 chr6 152020565 152020809 -30394433 + L2 LINE L2 2971 3313 0 1845 116 26 68 chr6 152020992 152021303 -30393939 + AluSq SINE Alu 1 298 -15 184 324 14 14 chr6 152021435 152021506 -30393736 + L2 LINE L2 3201 3271 -1 1570 177 43 17 chr6 152022425 152022725 -30392517 - AluJb SINE Alu -3 309 2 664 234 68 5 chr6 152022732 152022924 -30392318 - L1ME1 LINE L1 0 6166 5963 2198 136 22 14 chr6 152023119 152023480 -30391762 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr6 152023500 152023523 -30391719 + AT_rich Low_complexity Low_complexity 1 23 0 374 349 73 9 chr6 152023802 152024020 -30391222 - MIR SINE MIR -28 234 3 271 305 221 28 chr6 152024132 152024450 -30390792 - L2 LINE L2 -341 2973 2718 2626 193 39 20 chr6 152024450 152024995 -30390247 + MER74A LTR ERVL 1 555 -3 271 305 221 28 chr6 152024995 152025106 -30390136 - L2 LINE L2 -596 2718 2461 499 250 118 7 chr6 152025137 152025289 -30389953 - MIR SINE MIR 0 262 94 613 261 61 12 chr6 152025293 152025563 -30389679 + MLT1J1 LTR MaLR 6 309 -141 400 189 0 33 chr6 152025570 152025660 -30389582 - MER58 DNA MER1_type -9 2411 2325 262 86 0 155 chr6 152025655 152025713 -30389529 - Alu SINE Alu -9 291 243 * 257 273 141 8 chr6 152025808 152025936 -30389306 + MLT1J2 LTR MaLR 300 444 -6 343 247 0 54 chr6 152025938 152026031 -30389211 - MIR SINE MIR -167 95 8 2276 121 52 3 chr6 152026402 152026749 -30388493 + THE1B LTR MaLR 1 364 0 280 214 51 120 chr6 152028676 152028793 -30386449 + MER20B DNA MER1_type 1 109 -674 34 42 0 0 chr6 152029582 152029630 -30385612 + AT_rich Low_complexity Low_complexity 1 48 0 474 47 0 0 chr6 152029630 152029694 -30385548 - L1PA3 LINE L1 -3 6152 6089 1058 219 30 39 chr6 152029694 152030055 -30385187 + MER20B DNA MER1_type 320 677 -106 926 220 76 13 chr6 152030753 152031057 -30384185 - MER33 DNA MER1_type 0 324 2 323 281 128 55 chr6 152031670 152031834 -30383408 + MIR SINE MIR 29 204 -58 21 36 0 0 chr6 152032254 152032282 -30382960 + AT_rich Low_complexity Low_complexity 1 28 0 786 193 6 6 chr6 152032484 152032645 -30382597 + MER105 DNA DNA 1 161 -43 256 284 68 11 chr6 152033501 152033589 -30381653 + L2 LINE L2 3221 3313 0 693 263 47 0 chr6 152033654 152033844 -30381398 - MER3 DNA MER1_type -10 199 1 238 254 79 0 chr6 152033861 152033961 -30381281 + MIR SINE MIR 66 225 -37 33 25 0 0 chr6 152034145 152034185 -30381057 + AT_rich Low_complexity Low_complexity 1 40 0 1704 128 35 17 chr6 152034323 152034613 -30380629 + AluJb SINE Alu 1 295 -17 424 244 0 0 chr6 152034720 152034802 -30380440 - FRAM/FAM SINE Alu -91 85 4 211 391 33 46 chr6 152035304 152035455 -30379787 + MIR3 SINE MIR 21 169 -39 447 278 45 0 chr6 152036381 152036514 -30378728 + L2 LINE L2 3171 3309 -4 1749 152 22 4 chr6 152036763 152037096 -30378146 + AluSx SINE Alu 1 338 0 218 81 27 0 chr6 152037140 152037177 -30378065 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 345 47 0 0 chr6 152037224 152037267 -30377975 + (CA)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr6 152040792 152040823 -30374419 + AT_rich Low_complexity Low_complexity 1 31 0 222 239 0 0 chr6 152042582 152042653 -30372589 + (TA)n Simple_repeat Simple_repeat 1 71 0 299 221 29 0 chr6 152042975 152043043 -30372199 - MIR SINE MIR -126 136 67 480 77 0 0 chr6 152043288 152043353 -30371889 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 293 305 0 0 chr6 152043465 152043547 -30371695 + (TA)n Simple_repeat Simple_repeat 1 82 0 2219 99 3 0 chr6 152043873 152044155 -30371087 + AluSc SINE Alu 1 283 -26 2205 124 0 3 chr6 152045514 152045820 -30369422 + AluSx SINE Alu 1 305 -7 255 140 0 0 chr6 152047023 152047073 -30368169 + (CAT)n Simple_repeat Simple_repeat 3 52 0 22 0 0 0 chr6 152048846 152048868 -30366374 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr6 152048947 152048977 -30366265 + (CA)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chr6 152050607 152050634 -30364608 + AT_rich Low_complexity Low_complexity 1 27 0 668 192 27 0 chr6 152054282 152054428 -30360814 + L1MD3 LINE L1 7680 7829 -166 236 167 37 0 chr6 152055220 152055274 -30359968 + (TA)n Simple_repeat Simple_repeat 1 56 0 227 231 31 39 chr6 152061980 152062031 -30353211 + (TA)n Simple_repeat Simple_repeat 1 51 -78 2264 100 0 0 chr6 152062031 152062320 -30352922 + AluSc SINE Alu 1 289 -20 227 231 31 39 chr6 152062320 152062398 -30352844 + (TA)n Simple_repeat Simple_repeat 51 129 0 * 233 174 54 33 chr6 152062321 152062453 -30352789 + (CATATA)n Simple_repeat Simple_repeat 1 134 0 1925 168 0 7 chr6 152063006 152063309 -30351933 - AluJb SINE Alu -9 303 3 277 223 56 10 chr6 152063581 152063702 -30351540 + L1MC/D LINE L1 5570 5691 -469 1840 83 0 4 chr6 152063926 152064156 -30351086 + AluSp SINE Alu 84 312 -1 359 314 45 19 chr6 152065045 152065201 -30350041 - MIR SINE MIR -1 261 102 449 197 94 17 chr6 152065569 152065686 -30349556 - FLAM_A SINE Alu -7 126 1 2021 153 7 0 chr6 152065805 152066113 -30349129 + AluJo SINE Alu 1 310 -2 21 0 0 0 chr6 152066498 152066519 -30348723 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 152068555 152068583 -30346659 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 152069345 152069367 -30345875 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 152069486 152069523 -30345719 + AT_rich Low_complexity Low_complexity 1 37 0 2339 69 55 0 chr6 152069531 152069821 -30345421 + AluSc SINE Alu 1 306 -3 2345 69 0 7 chr6 152071367 152071658 -30343584 - AluY SINE Alu -22 289 1 258 105 0 0 chr6 152071779 152071817 -30343425 + (A)n Simple_repeat Simple_repeat 1 38 0 1513 176 97 0 chr6 152073448 152073726 -30341516 + AluJo SINE Alu 1 305 -7 183 80 0 0 chr6 152074134 152074159 -30341083 + (CA)n Simple_repeat Simple_repeat 2 26 0 1029 24 0 0 chr6 152074647 152074770 -30340472 + L1PA4 LINE L1 6029 6151 -4 202 300 66 117 chr6 152074785 152074885 -30340357 - L2 LINE L2 -12 3260 3156 2107 122 0 0 chr6 152074885 152075173 -30340069 + AluSx SINE Alu 1 288 -24 209 32 0 32 chr6 152075180 152075211 -30340031 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 202 300 66 117 chr6 152075211 152075359 -30339883 - L2 LINE L2 -122 3150 3017 353 371 13 25 chr6 152075969 152076128 -30339114 - MIR3 SINE MIR -21 187 31 2695 77 20 0 chr6 152078790 152079190 -30336052 + L1PA8 LINE L1 5754 6168 0 928 59 15 7 chr6 152080069 152080205 -30335037 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 1226 180 0 0 chr6 152080252 152080446 -30334796 - AluJo SINE Alu -118 194 1 23 0 0 0 chr6 152080525 152080548 -30334694 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 152081658 152081683 -30333559 + AT_rich Low_complexity Low_complexity 1 25 0 1932 130 25 0 chr6 152131880 152132164 -30283078 - AluSx SINE Alu -21 291 1 385 331 58 7 chr6 152132194 152132333 -30282909 - MIR SINE MIR -96 166 21 198 103 0 0 chr6 152132379 152132408 -30282834 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1783 168 0 3 chr6 152132439 152132724 -30282518 - AluJo SINE Alu -28 284 1 868 117 0 8 chr6 152135078 152135206 -30280036 + AluSq/x SINE Alu 1 127 -185 2056 138 10 0 chr6 152135353 152135642 -30279600 + AluSx SINE Alu 3 294 -18 1110 318 76 73 chr6 152136574 152137830 -30277412 - L2 LINE L2 -6 3266 2004 1052 199 37 49 chr6 152137843 152138253 -30276989 - MLT1C LTR MaLR -8 459 1 188 331 0 73 chr6 152138443 152138567 -30276675 - L2 LINE L2 -217 3055 2941 232 209 134 0 chr6 152138739 152138806 -30276436 - L2 LINE L2 0 3313 3238 337 293 9 19 chr6 152138934 152139040 -30276202 - MIR SINE MIR 0 262 158 532 182 47 53 chr6 152139042 152139212 -30276030 - MER104 DNA Tc2 0 180 12 242 158 0 0 chr6 152140363 152140401 -30274841 + MIR SINE MIR 117 154 -108 1964 137 7 0 chr6 152140576 152140883 -30274359 - MER1B DNA MER1_type -3 336 28 819 177 6 18 chr6 152141195 152141359 -30273883 + MER3 DNA MER1_type 48 209 0 321 235 0 24 chr6 152141577 152141662 -30273580 + (CA)n Simple_repeat Simple_repeat 2 84 0 199 114 91 23 chr6 152141858 152141902 -30273340 + MIR SINE MIR 119 165 -97 189 0 0 0 chr6 152142264 152142285 -30272957 + (T)n Simple_repeat Simple_repeat 1 21 0 401 324 50 11 chr6 152142502 152142684 -30272558 - MER5A DNA MER1_type 0 189 1 190 0 67 0 chr6 152142774 152142804 -30272438 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2232 108 0 3 chr6 152142808 152143104 -30272138 - AluSc SINE Alu -14 295 1 302 394 0 16 chr6 152143617 152143744 -30271498 + L2 LINE L2 3147 3271 -1 207 0 0 0 chr6 152144547 152144570 -30270672 + (T)n Simple_repeat Simple_repeat 1 23 0 191 125 0 0 chr6 152145872 152145904 -30269338 - L2 LINE L2 0 3272 3241 25 0 0 0 chr6 152147056 152147081 -30268161 + AT_rich Low_complexity Low_complexity 1 25 0 2151 113 0 7 chr6 152147282 152147573 -30267669 - AluSx SINE Alu -21 291 3 865 193 40 10 chr6 152151044 152151261 -30263981 - L1MD3 LINE L1 -412 7583 7311 308 174 203 0 chr6 152151263 152151332 -30263910 - MLT1F1 LTR MaLR -445 122 40 303 211 0 21 chr6 152151335 152151430 -30263812 - L1MC4a LINE L1 -797 7011 6919 293 344 117 47 chr6 152154087 152154712 -30260530 - L2 LINE L2 -223 3049 2373 23 0 0 0 chr6 152154733 152154756 -30260486 + AT_rich Low_complexity Low_complexity 1 23 0 2139 112 17 0 chr6 152154758 152155045 -30260197 - AluSx SINE Alu -20 292 1 305 349 61 15 chr6 152155099 152155231 -30260011 + MIR SINE MIR 20 157 -105 299 315 63 0 chr6 152155423 152155550 -30259692 - L2 LINE L2 -1 3271 3137 1264 287 101 17 chr6 152155679 152156374 -30258868 - L1ME3A LINE L1 -122 6048 5296 192 186 17 68 chr6 152157899 152157958 -30257284 + MER5A DNA MER1_type 44 99 -90 784 255 77 8 chr6 152158567 152158802 -30256440 + MIR SINE MIR 1 251 -11 404 332 71 20 chr6 152159240 152159436 -30255806 + MIR SINE MIR 7 212 -50 482 328 90 0 chr6 152159793 152159970 -30255272 + MIR SINE MIR 20 212 -50 516 277 57 44 chr6 152160091 152160321 -30254921 - MIR SINE MIR -14 248 10 339 346 65 7 chr6 152161671 152161824 -30253418 - MIR3 SINE MIR 0 208 47 52 0 0 0 chr6 152161974 152162026 -30253216 + AT_rich Low_complexity Low_complexity 1 52 0 296 277 18 54 chr6 152162783 152162895 -30252347 - MIR3 SINE MIR -96 112 5 750 178 70 6 chr6 152163444 152163601 -30251641 - MER3 DNA MER1_type 0 209 43 256 241 255 48 chr6 152163691 152163836 -30251406 - MIR SINE MIR 0 262 88 1507 190 56 0 chr6 152163935 152164234 -30251008 - AluJo SINE Alu 0 314 1 334 351 44 9 chr6 152164297 152164411 -30250831 - L2 LINE L2 -39 3233 3116 236 343 104 32 chr6 152164451 152164731 -30250511 - L2 LINE L2 -560 2754 2455 24 0 0 0 chr6 152164963 152164987 -30250255 + AT_rich Low_complexity Low_complexity 1 24 0 617 250 0 0 chr6 152164998 152165118 -30250124 + FLAM_C SINE Alu 1 120 -23 334 197 53 0 chr6 152165137 152165213 -30250029 + AluJ/FRAM SINE Alu 223 302 0 239 220 0 20 chr6 152168066 152168116 -30247126 + G-rich Low_complexity Low_complexity 1 49 0 223 258 0 16 chr6 152168730 152168792 -30246450 + CT-rich Low_complexity Low_complexity 4 64 0 1841 174 0 10 chr6 152170798 152171096 -30244146 - AluJo SINE Alu -17 295 1 183 200 183 33 chr6 152171791 152171851 -30243391 - MIR3 SINE MIR -25 183 115 181 354 42 10 chr6 152172467 152172563 -30242679 - L2 LINE L2 -840 2474 2376 343 287 58 0 chr6 152173427 152173514 -30241728 - L2 LINE L2 -23 3249 3158 222 350 65 35 chr6 152174075 152174275 -30240967 + L2 LINE L2 2570 2775 -539 446 344 5 36 chr6 152174339 152174531 -30240711 - MIR SINE MIR -57 205 20 228 86 0 0 chr6 152175431 152175466 -30239776 + (CA)n Simple_repeat Simple_repeat 2 36 0 1582 196 18 0 chr6 152176367 152176536 -30238706 - AluJb SINE Alu -21 291 113 255 31 0 0 chr6 152176536 152176568 -30238674 + (TG)n Simple_repeat Simple_repeat 1 32 0 1582 196 18 0 chr6 152176568 152176684 -30238558 - AluJb SINE Alu -199 113 1 248 252 54 72 chr6 152177060 152177171 -30238071 + MIR3 SINE MIR 2 110 -98 * 1643 309 107 29 chr6 152177167 152178513 -30236729 + L2 LINE L2 1768 3303 -10 222 225 70 14 chr6 152178517 152178588 -30236654 + MIR3 SINE MIR 105 179 -29 182 409 72 0 chr6 152178576 152178757 -30236485 + L2 LINE L2 2812 3005 -267 * 22 0 0 0 chr6 152181861 152181883 -30233359 + AT_rich Low_complexity Low_complexity 1 22 0 486 316 52 10 chr6 152182584 152182777 -30232465 + MIR SINE MIR 12 212 -50 253 263 119 47 chr6 152182986 152183171 -30232071 - MIR SINE MIR -3 259 41 21 36 0 0 chr6 152183977 152184005 -30231237 + AT_rich Low_complexity Low_complexity 1 28 0 1450 136 0 9 chr6 152184200 152184421 -30230821 - MER20 DNA MER1_type 0 219 1 869 265 56 4 chr6 152187069 152187303 -30227939 - MIR SINE MIR -2 260 15 600 253 55 33 chr6 152187318 152187500 -30227742 - MIR SINE MIR -66 196 11 209 128 26 0 chr6 152188318 152188357 -30226885 + A-rich Low_complexity Low_complexity 2 41 0 21 0 0 0 chr6 152188909 152188930 -30226312 + AT_rich Low_complexity Low_complexity 1 21 0 262 115 102 6 chr6 152190303 152190460 -30224782 + (TA)n Simple_repeat Simple_repeat 1 172 0 239 156 31 16 chr6 152190470 152190534 -30224708 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 386 125 71 6 chr6 152190537 152190705 -30224537 + (TA)n Simple_repeat Simple_repeat 2 180 0 273 233 40 23 chr6 152190708 152190884 -30224358 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 285 228 0 53 chr6 152190907 152191096 -30224146 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 2706 131 106 10 chr6 152192604 152193085 -30222157 + MER1A DNA MER1_type 1 527 0 22 0 0 0 chr6 152193112 152193134 -30222108 + AT_rich Low_complexity Low_complexity 1 22 0 2240 131 0 0 chr6 152193532 152193873 -30221369 - AluSq SINE Alu 0 341 1 1687 127 28 0 chr6 152193934 152194186 -30221056 - AluJo SINE Alu 0 312 54 255 175 48 95 chr6 152194356 152194419 -30220823 - L2 LINE L2 0 3272 3213 2240 102 0 7 chr6 152194531 152194825 -30220417 + AluSq SINE Alu 1 292 -21 28 0 0 0 chr6 152194825 152194853 -30220389 + AT_rich Low_complexity Low_complexity 1 28 0 424 270 79 16 chr6 152194907 152195033 -30220209 - L2 LINE L2 0 3313 3180 223 351 20 46 chr6 152198374 152198525 -30216717 - MIR3 SINE MIR -20 188 42 931 207 5 36 chr6 152199049 152199271 -30215971 - MER20 DNA MER1_type -2 217 3 23 54 0 0 chr6 152201171 152201208 -30214034 + AT_rich Low_complexity Low_complexity 1 37 0 328 250 164 0 chr6 152201798 152201914 -30213328 + MIR SINE MIR 65 199 -63 180 304 14 43 chr6 152202868 152202937 -30212305 + MIR3 SINE MIR 132 198 -10 346 360 147 24 chr6 152203312 152203606 -30211636 + L2 LINE L2 1858 2115 -1199 2096 136 0 13 chr6 152203606 152203922 -30211320 + AluJb SINE Alu 1 312 0 346 360 147 24 chr6 152203922 152204118 -30211124 + L2 LINE L2 2115 2408 -906 220 318 16 0 chr6 152204282 152204345 -30210897 + L2 LINE L2 3201 3264 -8 1675 171 17 27 chr6 152204689 152204987 -30210255 - AluJb SINE Alu -17 295 1 216 97 0 0 chr6 152208003 152208034 -30207208 + (GA)n Simple_repeat Simple_repeat 2 32 0 249 212 372 15 chr6 152210200 152210337 -30204905 + MER5A DNA MER1_type 4 189 0 21 0 0 0 chr6 152211147 152211168 -30204074 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 152212285 152212315 -30202927 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 152212407 152212428 -30202814 + AT_rich Low_complexity Low_complexity 1 21 0 253 325 37 37 chr6 152212524 152212687 -30202555 + L1ME LINE L1 5497 5659 -462 229 248 138 28 chr6 152212777 152212886 -30202356 + L1ME LINE L1 5794 5914 -207 282 149 9 84 chr6 152213027 152213134 -30202108 + A-rich Low_complexity Low_complexity 2 100 0 258 268 84 0 chr6 152213536 152213607 -30201635 + MIR3 SINE MIR 78 154 -54 25 0 0 0 chr6 152215754 152215779 -30199463 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr6 152218596 152218625 -30196617 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr6 152218749 152218778 -30196464 + AT_rich Low_complexity Low_complexity 1 29 0 273 299 89 64 chr6 152220102 152220322 -30194920 - MIR SINE MIR -6 256 34 186 183 133 17 chr6 152220402 152220462 -30194780 + L3 LINE CR1 626 692 -885 2243 113 3 3 chr6 152221204 152221515 -30193727 - AluSq SINE Alu -2 311 1 218 325 43 51 chr6 152223726 152223843 -30191399 - L2 LINE L2 -1 3312 3197 288 375 68 39 chr6 152224130 152224543 -30190699 - L2 LINE L2 -430 2884 2460 312 306 135 0 chr6 152224573 152224684 -30190558 - L2 LINE L2 -10 3262 3137 2065 112 25 0 chr6 152224695 152224980 -30190262 + AluSg SINE Alu 1 292 -18 200 288 83 30 chr6 152225297 152225429 -30189813 - L2 LINE L2 -1324 1990 1852 201 74 0 0 chr6 152226430 152226457 -30188785 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 202 258 90 45 chr6 152226462 152226551 -30188691 - L2 LINE L2 -2 3270 3178 200 132 0 105 chr6 152227421 152227497 -30187745 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 205 387 27 18 chr6 152227958 152228069 -30187173 + MIR3 SINE MIR 3 114 -94 245 29 0 29 chr6 152228102 152228137 -30187105 + (TG)n Simple_repeat Simple_repeat 2 35 0 270 107 0 45 chr6 152228900 152228952 -30186290 - Zaphod DNA AcHobo -7 4015 637 4664 208 78 22 chr6 152228963 152230216 -30185026 - Zaphod DNA AcHobo -2691 1340 18 1793 178 105 16 chr6 152230777 152231226 -30184016 + Charlie4a DNA MER1_type 3 491 -17 657 253 7 13 chr6 152231879 152232033 -30183209 - MIR SINE MIR -105 157 5 260 27 27 0 chr6 152233102 152233139 -30182103 + (GA)n Simple_repeat Simple_repeat 2 39 0 1129 104 49 44 chr6 152234162 152234345 -30180897 - FRAM SINE Alu 0 176 1 464 144 0 11 chr6 152234345 152234435 -30180807 + (TCCC)n Simple_repeat Simple_repeat 4 92 0 610 205 0 0 chr6 152234455 152234567 -30180675 - FLAM_C SINE Alu -29 114 3 956 66 13 20 chr6 152234606 152234758 -30180484 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1766 154 29 0 chr6 152234758 152235030 -30180212 - AluSx SINE Alu -32 280 1 223 273 13 13 chr6 152235233 152235310 -30179932 + MIR SINE MIR 77 153 -109 2058 114 43 3 chr6 152235390 152235689 -30179553 - AluSx SINE Alu -1 311 1 234 0 0 0 chr6 152236525 152236551 -30178691 + (CA)n Simple_repeat Simple_repeat 2 27 0 302 265 0 0 chr6 152237679 152237747 -30177495 + MIR SINE MIR 180 247 -15 885 326 115 43 chr6 152237829 152238177 -30177065 + L2 LINE L2 1773 2095 -1219 1760 169 90 19 chr6 152238177 152238544 -30176698 + MSTD LTR MaLR 1 393 -3 885 326 115 43 chr6 152238544 152239114 -30176128 + L2 LINE L2 2095 2757 -557 248 359 72 87 chr6 152239152 152239486 -30175756 + L2 LINE L2 2895 3223 -49 1813 151 38 7 chr6 152239559 152239851 -30175391 + AluJb SINE Alu 1 301 -11 30 59 0 0 chr6 152240306 152240357 -30174885 + AT_rich Low_complexity Low_complexity 1 51 0 3657 247 50 20 chr6 152240485 152241584 -30173658 - L1MEc LINE L1 -5226 1170 39 228 86 0 0 chr6 152242189 152242224 -30173018 + (TC)n Simple_repeat Simple_repeat 1 35 0 2180 132 3 0 chr6 152242633 152242944 -30172298 - AluSx SINE Alu 0 312 1 358 306 47 50 chr6 152243206 152243446 -30171796 - MIR SINE MIR -1 261 23 2090 109 3 3 chr6 152243531 152243843 -30171399 + AluSx SINE Alu 1 312 0 221 337 45 11 chr6 152243890 152243979 -30171263 - L2 LINE L2 -12 3301 3210 207 203 0 0 chr6 152244593 152244657 -30170585 + (TCCA)n Simple_repeat Simple_repeat 4 67 0 506 207 6 0 chr6 152244684 152244853 -30170389 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 414 206 0 25 chr6 152244854 152245102 -30170140 + CT-rich Low_complexity Low_complexity 1 241 0 257 366 75 26 chr6 152245147 152245523 -30169719 - L2 LINE L2 -226 3046 2654 481 243 108 56 chr6 152246470 152246684 -30168558 + MIR SINE MIR 19 243 -19 532 40 26 0 chr6 152247013 152247089 -30168153 - MER41A LTR ERV1 -81 473 396 350 287 46 37 chr6 152247480 152247588 -30167654 + L2 LINE L2 3163 3271 -1 285 29 0 0 chr6 152249827 152249861 -30165381 + (TG)n Simple_repeat Simple_repeat 1 34 0 921 240 132 34 chr6 152250984 152251393 -30163849 + MLT1J2 LTR MaLR 2 450 0 312 306 22 52 chr6 152251688 152251822 -30163420 - MIR SINE MIR -56 206 77 846 83 0 41 chr6 152251990 152252111 -30163131 - AluSg/x SINE Alu -9 303 188 180 0 0 0 chr6 152252213 152252233 -30163009 + (T)n Simple_repeat Simple_repeat 1 20 0 503 319 46 17 chr6 152254495 152254736 -30160506 - MIR SINE MIR 0 262 15 534 62 0 0 chr6 152255122 152255220 -30160022 - AluY SINE Alu 0 315 218 2064 143 3 15 chr6 152255516 152255851 -30159391 - MER44D DNA MER2_type 0 609 9 23 0 0 0 chr6 152256155 152256178 -30159064 + AT_rich Low_complexity Low_complexity 1 23 0 3614 137 39 5 chr6 152256257 152256854 -30158388 + Tigger2 DNA MER2_type 134 750 -1968 1450 132 26 49 chr6 152256909 152257175 -30158067 + Tigger2 DNA MER2_type 2458 2717 -1 206 284 168 11 chr6 152257441 152257536 -30157706 - MIR SINE MIR -104 158 49 187 204 163 122 chr6 152257568 152257666 -30157576 + MIR SINE MIR 32 133 -75 219 246 0 0 chr6 152257956 152258017 -30157225 + T-rich Low_complexity Low_complexity 1 61 0 25 0 0 0 chr6 152258221 152258246 -30156996 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 152259356 152259379 -30155863 + AT_rich Low_complexity Low_complexity 1 23 0 1239 180 161 8 chr6 152259458 152259719 -30155523 + AluJb SINE Alu 1 301 -1 523 73 12 12 chr6 152259728 152259810 -30155432 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 180 0 0 0 chr6 152260689 152260709 -30154533 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2718 57 14 0 chr6 152260709 152261058 -30154184 - L1PA8 LINE L1 -24 6148 5795 339 348 14 28 chr6 152263747 152263888 -30151354 + MIR3 SINE MIR 31 169 -39 203 296 66 117 chr6 152264516 152264664 -30150578 + L2 LINE L2 3017 3171 -101 245 29 0 29 chr6 152264664 152264699 -30150543 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2139 122 0 0 chr6 152264706 152264994 -30150248 - AluSx SINE Alu -24 288 1 203 296 66 117 chr6 152264994 152265094 -30150148 + L2 LINE L2 3177 3260 -12 1026 24 0 0 chr6 152265108 152265231 -30150011 - L1PA4 LINE L1 -4 6151 6029 183 80 0 0 chr6 152265719 152265744 -30149498 + (TG)n Simple_repeat Simple_repeat 2 26 0 1460 175 105 0 chr6 152266154 152266434 -30148808 - AluJo SINE Alu 0 307 1 366 80 0 0 chr6 152268065 152268115 -30147127 + (T)n Simple_repeat Simple_repeat 1 50 0 2408 55 0 7 chr6 152268236 152268527 -30146715 + AluY SINE Alu 1 289 -22 2314 66 56 0 chr6 152270073 152270361 -30144881 - AluSc SINE Alu -5 304 1 23 54 0 0 chr6 152270369 152270406 -30144836 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr6 152270525 152270547 -30144695 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 152271309 152271337 -30143905 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 152273373 152273394 -30141848 + AT_rich Low_complexity Low_complexity 1 21 0 1987 153 7 0 chr6 152273779 152274087 -30141155 - AluJo SINE Alu -2 310 1 444 197 94 17 chr6 152274206 152274323 -30140919 + FLAM_A SINE Alu 1 126 -7 368 314 45 19 chr6 152274691 152274847 -30140395 + MIR SINE MIR 102 261 -1 1848 82 0 4 chr6 152275746 152275977 -30139265 - AluSp SINE Alu 0 313 84 277 223 56 10 chr6 152276201 152276322 -30138920 - L1MC/D LINE L1 -469 5652 5570 1944 162 0 7 chr6 152276594 152276896 -30138346 + AluJb SINE Alu 3 302 -10 229 177 35 44 chr6 152277449 152277562 -30137680 + (TTATA)n Simple_repeat Simple_repeat 3 114 0 * 233 174 54 33 chr6 152277489 152277582 -30137660 + (TATATG)n Simple_repeat Simple_repeat 1 91 -350 2221 104 0 0 chr6 152277582 152277870 -30137372 - AluSc SINE Alu -21 288 1 233 174 54 33 chr6 152277870 152277921 -30137321 + (TATATG)n Simple_repeat Simple_repeat 91 441 0 236 167 37 0 chr6 152284629 152284683 -30130559 + (TA)n Simple_repeat Simple_repeat 1 56 0 668 192 27 0 chr6 152285475 152285621 -30129621 - L1MD3 LINE L1 -166 7829 7680 27 0 0 0 chr6 152289269 152289296 -30125946 + AT_rich Low_complexity Low_complexity 1 27 0 393 22 0 0 chr6 152290926 152290972 -30124270 + (TG)n Simple_repeat Simple_repeat 1 46 0 208 220 34 0 chr6 152291046 152291105 -30124137 + (TA)n Simple_repeat Simple_repeat 1 61 0 255 140 0 0 chr6 152292846 152292896 -30122346 + (ATG)n Simple_repeat Simple_repeat 3 52 0 2217 124 0 3 chr6 152294099 152294405 -30120837 - AluSx SINE Alu -7 305 1 2232 96 3 0 chr6 152295764 152296046 -30119196 - AluSc SINE Alu -26 283 1 309 293 0 0 chr6 152296372 152296454 -30118788 + (TA)n Simple_repeat Simple_repeat 1 82 0 444 82 0 0 chr6 152296566 152296627 -30118615 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 299 221 29 0 chr6 152296873 152296941 -30118301 + MIR SINE MIR 67 136 -126 290 268 0 0 chr6 152297263 152297334 -30117908 + (TA)n Simple_repeat Simple_repeat 2 72 0 23 33 0 0 chr6 152299093 152299123 -30116119 + AT_rich Low_complexity Low_complexity 1 30 0 381 43 0 0 chr6 152302648 152302695 -30112547 + (TG)n Simple_repeat Simple_repeat 2 48 0 218 81 27 0 chr6 152302742 152302779 -30112463 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 369 58 0 0 chr6 152302823 152302875 -30112367 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1727 148 22 4 chr6 152302877 152303148 -30112094 - AluSx SINE Alu -36 276 1 447 278 45 0 chr6 152303397 152303530 -30111712 - L2 LINE L2 -4 3309 3171 211 391 33 46 chr6 152304456 152304607 -30110635 - MIR3 SINE MIR -39 169 21 424 244 0 0 chr6 152305109 152305191 -30110051 + FRAM/FAM SINE Alu 4 85 -91 1704 128 35 17 chr6 152305298 152305588 -30109654 - AluJb SINE Alu -17 295 1 33 25 0 0 chr6 152305726 152305766 -30109476 + AT_rich Low_complexity Low_complexity 1 40 0 238 254 79 0 chr6 152305950 152306050 -30109192 - MIR SINE MIR -37 225 66 708 258 47 0 chr6 152306067 152306257 -30108985 + MER3 DNA MER1_type 1 199 -10 233 296 68 11 chr6 152306322 152306410 -30108832 - L2 LINE L2 0 3313 3221 786 193 6 6 chr6 152307266 152307427 -30107815 - MER105 DNA DNA -43 161 1 21 36 0 0 chr6 152307629 152307657 -30107585 + AT_rich Low_complexity Low_complexity 1 28 0 323 281 128 55 chr6 152308077 152308241 -30107001 - MIR SINE MIR -58 204 29 911 224 76 13 chr6 152308854 152309158 -30106084 + MER33 DNA MER1_type 2 324 0 1058 219 30 39 chr6 152309856 152310217 -30105025 - MER20B DNA MER1_type -106 677 320 492 31 0 0 chr6 152310217 152310281 -30104961 + L1PA3 LINE L1 6089 6152 -3 40 21 0 0 chr6 152310281 152310328 -30104914 + AT_rich Low_complexity Low_complexity 1 47 0 316 241 167 82 chr6 152310977 152311234 -30104008 - MER20B DNA MER1_type -504 279 1 2290 121 52 3 chr6 152313161 152313508 -30101734 - THE1B LTR MaLR 0 364 1 343 247 0 54 chr6 152313879 152313972 -30101270 + MIR SINE MIR 8 95 -167 257 273 141 8 chr6 152313974 152314102 -30101140 - MLT1J2 LTR MaLR -6 444 300 262 86 0 155 chr6 152314197 152314255 -30100987 + Alu SINE Alu 245 293 -9 * 400 189 0 33 chr6 152314250 152314340 -30100902 + MER58 DNA MER1_type 2325 2411 -9 613 261 61 12 chr6 152314347 152314617 -30100625 - MLT1J1 LTR MaLR -141 309 6 499 250 118 7 chr6 152314621 152314773 -30100469 + MIR SINE MIR 94 262 0 271 305 221 28 chr6 152314804 152314915 -30100327 + L2 LINE L2 2461 2549 -765 2651 196 39 15 chr6 152314915 152315457 -30099785 - MER74A LTR ERVL -3 555 1 271 305 221 28 chr6 152315457 152315775 -30099467 + L2 LINE L2 2549 2973 -341 374 349 73 9 chr6 152315887 152316105 -30099137 + MIR SINE MIR 3 234 -28 23 0 0 0 chr6 152316384 152316407 -30098835 + AT_rich Low_complexity Low_complexity 1 23 0 2185 138 22 14 chr6 152316427 152316788 -30098454 + THE1B LTR MaLR 1 364 0 677 229 68 5 chr6 152316983 152317175 -30098067 + L1ME1 LINE L1 5963 6166 0 1585 173 43 17 chr6 152317182 152317482 -30097760 + AluJb SINE Alu 2 309 -3 184 324 14 14 chr6 152318396 152318467 -30096775 - L2 LINE L2 -1 3271 3201 1845 116 26 68 chr6 152318599 152318910 -30096332 - AluSq SINE Alu -15 298 1 612 330 156 21 chr6 152319093 152319337 -30095905 - L2 LINE L2 0 3313 3103 2089 123 169 0 chr6 152319337 152319703 -30095539 + MSTA LTR MaLR 1 428 0 612 330 156 21 chr6 152319703 152319895 -30095347 - L2 LINE L2 -210 3103 2818 2886 251 79 44 chr6 152319993 152320244 -30094998 - L1MD3 LINE L1 0 8041 7800 1304 216 52 111 chr6 152320244 152320796 -30094446 + MLT2B1 LTR ERVL 1 520 0 2886 251 79 44 chr6 152320796 152321480 -30093762 - L1MD3 LINE L1 -241 7800 7142 1723 191 3 13 chr6 152321480 152321784 -30093458 - AluJo SINE Alu -11 301 1 318 50 0 0 chr6 152321786 152321826 -30093416 + (TTA)n Simple_repeat Simple_repeat 1 40 0 2068 117 3 3 chr6 152321826 152322108 -30093134 - AluSx SINE Alu -30 282 1 2886 251 79 44 chr6 152322108 152322624 -30092618 - L1MD3 LINE L1 -898 7143 6545 599 300 88 15 chr6 152322640 152322900 -30092342 - L2 LINE L2 -606 2708 2430 1552 171 43 89 chr6 152325247 152325465 -30089777 - MLT1A2 LTR MaLR 0 374 180 1793 183 0 16 chr6 152325465 152325776 -30089466 - AluJb SINE Alu -6 306 1 1552 171 43 89 chr6 152325776 152325949 -30089293 - MLT1A2 LTR MaLR -194 180 1 216 97 0 0 chr6 152327355 152327386 -30087856 + L2 LINE L2 3274 3304 -9 192 329 71 0 chr6 152327943 152328013 -30087229 + MIR3 SINE MIR 86 160 -48 1707 154 3 28 chr6 152328519 152328828 -30086414 + AluJo SINE Alu 7 308 0 1611 194 0 3 chr6 152328831 152329120 -30086122 + AluJo SINE Alu 1 288 -24 571 307 30 5 chr6 152329141 152329352 -30085890 - MIR SINE MIR -29 233 15 577 300 8 57 chr6 152329489 152329577 -30085665 + MIR SINE MIR 13 104 -158 2209 120 0 3 chr6 152329577 152329877 -30085365 - AluSq SINE Alu -14 299 1 577 300 8 57 chr6 152329877 152330051 -30085191 + MIR SINE MIR 104 262 0 2255 111 0 3 chr6 152330841 152331147 -30084095 + AluSq SINE Alu 1 305 -8 372 70 53 0 chr6 152331268 152331356 -30083886 + L1PA4 LINE L1 6088 6178 0 197 241 93 0 chr6 152331555 152331609 -30083633 + L2 LINE L2 3179 3237 -76 294 302 9 19 chr6 152332312 152332418 -30082824 + L2 LINE L2 2244 2348 -966 1596 255 102 75 chr6 152332418 152333397 -30081845 + L1MC4a LINE L1 5866 6871 -937 * 5215 255 34 63 chr6 152333380 152335104 -30080138 + L1MEc LINE L1 22 1673 -4723 1623 149 78 0 chr6 152335104 152335373 -30079869 + AluJb SINE Alu 1 290 -22 5215 255 34 63 chr6 152335373 152335779 -30079463 + L1MEc LINE L1 1673 2089 -4307 1358 238 36 88 chr6 152335939 152336004 -30079238 + L1MC4 LINE L1 7117 7184 -858 2450 90 0 0 chr6 152336004 152336304 -30078938 + AluSg SINE Alu 1 300 -10 1358 238 36 88 chr6 152336304 152336817 -30078425 + L1MC4 LINE L1 7184 7665 -377 2445 144 37 0 chr6 152336842 152337246 -30077996 - MSTB1 LTR MaLR -13 419 1 219 213 21 0 chr6 152337251 152337298 -30077944 - MIR SINE MIR -156 106 59 187 325 13 39 chr6 152338911 152338988 -30076254 - MIR SINE MIR -101 107 33 207 0 0 0 chr6 152339098 152339121 -30076121 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1687 134 48 20 chr6 152339519 152339811 -30075431 + AluJo SINE Alu 5 304 -8 635 286 41 6 chr6 152340353 152340524 -30074718 - MER5B DNA MER1_type 0 178 2 490 286 82 0 chr6 152341111 152341258 -30073984 + MIR3 SINE MIR 9 167 -41 2246 101 0 19 chr6 152342401 152342709 -30072533 - AluSg SINE Alu -8 302 1 816 143 0 8 chr6 152343462 152343588 -30071654 + FLAM_C SINE Alu 1 125 -18 5788 96 1 1 chr6 152343594 152344376 -30070866 + L1PA12 LINE L1 5387 6168 0 239 321 65 16 chr6 152344379 152344563 -30070679 - L1MCa LINE L1 -4734 1910 1718 2829 188 32 4 chr6 152344588 152345148 -30070094 - L1MB4 LINE L1 -91 6089 5514 297 241 25 25 chr6 152345151 152345230 -30070012 - L1MCa LINE L1 -5640 902 824 346 287 19 13 chr6 152345245 152345402 -30069840 - L1MCa LINE L1 -6382 160 3 373 269 61 61 chr6 152345414 152345626 -30069616 - L1MDa LINE L1 -4819 1721 1510 352 108 0 0 chr6 152345656 152345710 -30069532 - MLT2D LTR ERVL -2 412 366 425 251 183 17 chr6 152348456 152348631 -30066611 + MIR SINE MIR 59 262 0 2007 198 55 22 chr6 152349459 152349914 -30065328 - MLT1D LTR MaLR 0 505 36 26 0 0 0 chr6 152350984 152351010 -30064232 + AT_rich Low_complexity Low_complexity 1 26 0 350 175 0 0 chr6 152351010 152351067 -30064175 - AluJ/FLAM SINE Alu -245 57 1 715 114 9 0 chr6 152351240 152351345 -30063897 + L1MA9 LINE L1 6207 6312 0 596 333 78 0 chr6 152351463 152351694 -30063548 + MIR SINE MIR 6 254 -8 252 301 27 0 chr6 152352154 152352227 -30063015 + MIR3 SINE MIR 128 202 -6 236 254 183 24 chr6 152353135 152353261 -30061981 + L2 LINE L2 3168 3313 0 566 246 8 8 chr6 152353644 152353778 -30061464 + MER94 DNA DNA 1 134 0 1186 213 75 24 chr6 152353912 152354287 -30060955 - MER74B LTR ERVL -21 601 208 226 143 191 0 chr6 152354367 152354409 -30060833 - MER74B LTR ERVL -569 53 4 237 286 76 19 chr6 152354948 152355053 -30060189 - MIR SINE MIR -62 146 36 602 194 139 24 chr6 152360632 152360797 -30054445 - MER5A DNA MER1_type 0 189 6 277 215 123 0 chr6 152361803 152361868 -30053374 + L3 LINE CR1 1504 1576 -1 22 35 0 0 chr6 152361917 152361946 -30053296 + AT_rich Low_complexity Low_complexity 1 29 0 249 274 89 89 chr6 152361951 152362119 -30053123 - L3 LINE CR1 -9 1568 1401 309 265 22 29 chr6 152362129 152362265 -30052977 - L1ME4a LINE L1 -3 6118 5984 222 171 0 0 chr6 152362273 152362314 -30052928 + (TG)n Simple_repeat Simple_repeat 1 41 0 614 307 10 20 chr6 152362437 152362639 -30052603 - L3 LINE CR1 -160 1417 1218 639 147 162 0 chr6 152362642 152362778 -30052464 - L1MA10 LINE L1 -2 6332 6175 25 37 0 37 chr6 152362812 152362826 -30052416 + AT_rich Low_complexity Low_complexity 1 14 -38 2726 102 16 11 chr6 152362826 152363207 -30052035 + L1PA10 LINE L1 5781 6163 -5 25 37 0 37 chr6 152363207 152363246 -30051996 + AT_rich Low_complexity Low_complexity 14 52 0 4934 152 19 33 chr6 152363246 152363282 -30051960 - L1MB1 LINE L1 -32 6157 6122 2195 96 3 3 chr6 152363282 152363575 -30051667 - AluSx SINE Alu -17 295 3 4934 152 19 33 chr6 152363575 152364667 -30050575 - L1MB1 LINE L1 -67 6122 5045 1903 209 6 0 chr6 152364677 152365040 -30050202 + L1MB1 LINE L1 4662 5026 -1120 193 303 30 0 chr6 152365085 152365151 -30050091 - L3 LINE CR1 -405 1172 1105 411 330 165 31 chr6 152365425 152365649 -30049593 - L2 LINE L2 -27 3245 2992 478 284 175 0 chr6 152365654 152365837 -30049405 - L3 LINE CR1 -782 795 581 21 0 0 0 chr6 152366972 152366993 -30048249 + AT_rich Low_complexity Low_complexity 1 21 0 2554 131 19 6 chr6 152367844 152368203 -30047039 + THE1B LTR MaLR 1 364 0 270 346 15 0 chr6 152368952 152369082 -30046160 + L2 LINE L2 1925 2056 -1258 260 346 47 0 chr6 152369085 152369212 -30046030 + L2 LINE L2 2791 2922 -391 707 251 114 18 chr6 152369523 152369750 -30045492 - MIR SINE MIR -12 250 2 2397 72 3 3 chr6 152370076 152370368 -30044874 + AluSg1 SINE Alu 1 292 -17 757 169 54 0 chr6 152370654 152370784 -30044458 - MER45A DNA AcHobo -41 137 1 318 362 78 0 chr6 152371339 152371480 -30043762 - L2 LINE L2 0 3272 3121 21 0 0 0 chr6 152373219 152373240 -30042002 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 152373844 152373877 -30041365 + GC_rich Low_complexity Low_complexity 1 33 0 35 0 0 0 chr6 152374023 152374058 -30041184 + GC_rich Low_complexity Low_complexity 1 35 0 1309 154 0 5 chr6 152375087 152375288 -30039954 + L1MC1 LINE L1 6129 6328 -5 659 307 66 17 chr6 152379567 152379900 -30035342 + L3 LINE CR1 1162 1570 -7 1781 152 0 10 chr6 152382291 152382580 -30032662 + AluJb SINE Alu 1 286 -26 1147 118 12 0 chr6 152382982 152383151 -30032091 + AluJb SINE Alu 127 297 -15 2047 115 11 0 chr6 152383226 152383512 -30031730 - AluSg SINE Alu -21 289 1 236 143 0 0 chr6 152383626 152383668 -30031574 - L1MC4 LINE L1 -1332 6710 6669 516 200 7 100 chr6 152383817 152383957 -30031285 + L2 LINE L2 3187 3313 0 424 283 185 0 chr6 152384389 152384594 -30030648 - MIR SINE MIR -4 258 16 317 323 67 36 chr6 152384719 152384942 -30030300 + MIR SINE MIR 13 242 -20 495 294 65 33 chr6 152385082 152385266 -30029976 - MIR3 SINE MIR -3 205 16 202 297 110 42 chr6 152387636 152387754 -30027488 + L2 LINE L2 3145 3270 -2 261 57 0 0 chr6 152391444 152391479 -30023763 + (CA)n Simple_repeat Simple_repeat 1 35 0 303 104 0 0 chr6 152391931 152391979 -30023263 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 368 276 158 71 chr6 152391994 152392404 -30022838 + L1M2 LINE L1 509 954 -5895 23 78 0 0 chr6 152392809 152392860 -30022382 + GC_rich Low_complexity Low_complexity 1 51 0 339 113 0 0 chr6 152392984 152393037 -30022205 + (GGA)n Simple_repeat Simple_repeat 2 54 0 195 162 0 0 chr6 152393410 152393447 -30021795 + GA-rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 152394598 152394626 -30020616 + GC_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr6 152394947 152394971 -30020271 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 865 146 0 0 chr6 152395842 152395979 -30019263 - AluJb SINE Alu -4 308 172 721 277 111 81 chr6 152396570 152397003 -30018239 - L2 LINE L2 -5 3308 2863 214 231 115 77 chr6 152397039 152397143 -30018099 - MER5A DNA MER1_type -28 161 54 * 217 352 40 24 chr6 152397061 152397186 -30018056 + MER5A DNA MER1_type 63 189 0 480 287 138 21 chr6 152397278 152397567 -30017675 - MLT1K LTR MaLR -2 586 264 250 419 39 0 chr6 152398407 152398586 -30016656 + MER5A DNA MER1_type 1 186 -3 181 274 191 0 chr6 152399784 152399868 -30015374 + MIR SINE MIR 52 151 -57 423 205 138 129 chr6 152401476 152401700 -30013542 - L1ME3 LINE L1 -38 6124 5901 630 285 82 51 chr6 152401731 152402187 -30013055 - L2 LINE L2 -34 3279 2791 354 267 127 24 chr6 152403605 152403770 -30011472 + MIR SINE MIR 32 213 -49 498 236 57 0 chr6 152403808 152403931 -30011311 + MIR3 SINE MIR 72 201 -7 644 214 26 13 chr6 152403934 152404088 -30011154 + MIR SINE MIR 106 261 -1 489 151 54 11 chr6 152404245 152404285 -30010957 + L1MA2 LINE L1 6206 6243 -61 1540 76 35 0 chr6 152404285 152404510 -30010732 + AluSg/x SINE Alu 80 311 0 489 151 54 11 chr6 152404510 152404561 -30010681 + L1MA2 LINE L1 6243 6302 -2 1855 158 0 23 chr6 152404688 152404992 -30010250 + AluJo SINE Alu 3 299 -13 456 179 28 57 chr6 152406121 152406227 -30009015 + MLT1A1 LTR MaLR 1 103 -262 1210 180 47 16 chr6 152406650 152406905 -30008337 + MLT1A1 LTR MaLR 103 365 0 330 323 0 0 chr6 152407300 152407399 -30007843 + MER94 DNA DNA 35 133 -1 1959 180 39 48 chr6 152407709 152407787 -30007455 + MLT2A2 LTR ERVL 1 78 -476 2332 122 73 14 chr6 152407787 152408131 -30007111 - THE1B LTR MaLR 0 364 1 1959 180 39 48 chr6 152408131 152408603 -30006639 + MLT2A2 LTR ERVL 78 554 0 445 306 48 0 chr6 152409184 152409308 -30005934 + L3b LINE CR1 1380 1509 -74 236 239 272 0 chr6 152409876 152409968 -30005274 - L2 LINE L2 -5 3267 3151 3789 192 76 32 chr6 152409978 152410267 -30004975 - MER69 DNA AcHobo 0 2526 2251 2228 94 0 3 chr6 152410267 152410565 -30004677 - AluSc SINE Alu -12 297 1 3789 192 76 32 chr6 152410565 152411301 -30003941 - MER69 DNA AcHobo -275 2251 1456 2072 207 93 24 chr6 152411487 152411562 -30003680 - L1ME2 LINE L1 -2 6162 6094 2285 94 0 3 chr6 152411562 152411859 -30003383 + AluSg SINE Alu 1 296 -14 2072 207 93 24 chr6 152411859 152412329 -30002913 - L1ME2 LINE L1 -70 6094 5579 367 332 78 86 chr6 152412519 152412905 -30002337 + L2 LINE L2 2890 3272 0 319 236 11 11 chr6 152413955 152414044 -30001198 - MER103 DNA DNA -75 91 3 684 275 54 75 chr6 152414397 152414677 -30000565 - MLT1H1 LTR MaLR -281 274 1 1580 221 0 16 chr6 152414880 152415187 -30000055 + AluJb SINE Alu 1 302 -10 1155 216 14 0 chr6 152415231 152415449 -29999793 + MER58A DNA MER1_type 2 222 -2 2590 218 50 25 chr6 152415622 152416154 -29999088 - L1ME LINE L1 -442 5724 5207 2131 135 0 10 chr6 152416154 152416466 -29998776 + AluSg SINE Alu 1 309 -1 2590 218 50 25 chr6 152416466 152416511 -29998731 - L1ME LINE L1 -959 5207 5165 2264 119 6 0 chr6 152416511 152416822 -29998420 - AluSq SINE Alu 0 313 1 2590 218 50 25 chr6 152416822 152416872 -29998370 - L1ME LINE L1 -1001 5165 5118 1753 104 4 0 chr6 152416872 152417103 -29998139 + AluSg SINE Alu 46 277 -33 249 33 0 0 chr6 152417103 152417133 -29998109 + (CA)n Simple_repeat Simple_repeat 1 30 0 2590 218 50 25 chr6 152417133 152417583 -29997659 - L1ME LINE L1 -1047 5119 4621 843 323 69 10 chr6 152417608 152417938 -29997304 + LTR16C LTR ERVL 60 418 -73 2822 99 0 0 chr6 152417938 152418291 -29996951 - THE1A LTR MaLR -2 353 1 843 323 69 10 chr6 152418291 152418350 -29996892 + LTR16C LTR ERVL 418 472 -19 1231 326 32 46 chr6 152418432 152419079 -29996163 + ERVL LTR ERVL 1999 2636 -3128 518 242 53 15 chr6 152419118 152419250 -29995992 + LTR16C LTR ERVL 355 491 0 2937 208 33 8 chr6 152419282 152419947 -29995295 + L1MA8 LINE L1 5256 5937 -354 * 5725 95 7 9 chr6 152419354 152420162 -29995080 + L1PB2 LINE L1 5345 6151 0 237 260 158 69 chr6 152420278 152420524 -29994718 - MLT1J2 LTR MaLR -146 403 136 625 291 102 42 chr6 152420585 152421151 -29994091 + L1M4 LINE L1 2268 2867 -3279 3048 18 3 0 chr6 152421160 152421490 -29993752 - L1PA4 LINE L1 -4 6151 5821 992 7 0 96 chr6 152421490 152421593 -29993649 + L1P LINE L1 4538 4627 -1519 2780 3 0 0 chr6 152421593 152421889 -29993353 - AluYa5 SINE Alu -15 296 1 992 7 0 96 chr6 152421889 152421920 -29993322 + L1P LINE L1 4627 4659 -1487 393 232 116 9 chr6 152421912 152422024 -29993218 + L1M4 LINE L1 2864 2987 -3159 * 624 309 38 11 chr6 152422023 152422285 -29992957 + L1ME3A LINE L1 5616 5884 -286 887 278 85 10 chr6 152422507 152423092 -29992150 + MER115 DNA AcHobo 5 680 -13 551 324 163 21 chr6 152423250 152423728 -29991514 - L2 LINE L2 -456 2858 2313 23 0 0 0 chr6 152423803 152423826 -29991416 + AT_rich Low_complexity Low_complexity 1 23 0 13274 98 193 0 chr6 152424016 152426312 -29988930 + L1P3 LINE L1 2707 5473 -681 1037 103 0 0 chr6 152426301 152426447 -29988795 - L1P2 LINE L1 -615 5539 5394 * 18882 72 6 13 chr6 152426424 152430575 -29984667 - L1P LINE L1 -2026 4120 4 348 266 52 7 chr6 152430649 152430803 -29984439 - MLT1J2 LTR MaLR -283 167 7 1259 286 48 33 chr6 152431341 152431861 -29983381 + MLT1K LTR MaLR 53 580 -8 347 200 100 0 chr6 152433178 152433268 -29981974 + MIR SINE MIR 98 196 -66 189 74 0 0 chr6 152433687 152433714 -29981528 + (CA)n Simple_repeat Simple_repeat 2 28 0 1730 141 0 69 chr6 152435563 152435892 -29979350 - AluSx SINE Alu 0 308 1 271 371 16 0 chr6 152436044 152436168 -29979074 + Charlie8 DNA MER1_type 140 265 -2152 1995 162 0 13 chr6 152436345 152436660 -29978582 - AluSx SINE Alu -1 311 1 1512 174 25 12 chr6 152436736 152437082 -29978160 + MLT2C1 LTR ERVL 1 395 -2 200 365 22 67 chr6 152437412 152437590 -29977652 + L2 LINE L2 2942 3111 -161 790 271 70 65 chr6 152437694 152438093 -29977149 + MLT1J LTR MaLR 1 401 -110 395 288 115 62 chr6 152439120 152439571 -29975671 + L1ME4a LINE L1 4861 5335 -811 7729 82 3 3 chr6 152439599 152440767 -29974475 + L1P LINE L1 4261 5429 -743 25176 112 14 16 chr6 152440776 152444895 -29970347 + L1PA8 LINE L1 11 4120 -2026 5520 75 14 0 chr6 152444872 152445635 -29969607 + L1PA8 LINE L1 5394 6167 -5 * 911 47 7 2 chr6 152445624 152445660 -29969582 + L1P LINE L1 4498 4532 -1614 * 2795 19 3 0 chr6 152445660 152445981 -29969261 - L1PA4 LINE L1 -13 6142 5821 911 47 7 2 chr6 152445981 152446087 -29969155 + L1P LINE L1 4532 4643 -1503 6910 63 20 0 chr6 152446192 152447130 -29968112 - L1PA6 LINE L1 -14 6140 5199 604 200 143 43 chr6 152447136 152447366 -29967876 - MLT1C LTR MaLR -156 311 59 2253 91 0 3 chr6 152447501 152447844 -29967398 + AluY SINE Alu 1 342 0 309 294 10 0 chr6 152447975 152448077 -29967165 + L1ME4a LINE L1 5623 5725 -2083 265 281 131 39 chr6 152448153 152448459 -29966783 + L1ME4a LINE L1 5788 6121 0 21 0 0 0 chr6 152448467 152448488 -29966754 + AT_rich Low_complexity Low_complexity 1 21 0 227 275 125 0 chr6 152448760 152448840 -29966402 + MIR SINE MIR 31 120 -142 1565 254 101 50 chr6 152449009 152449257 -29965985 + MER20B DNA MER1_type 1 235 -548 2199 117 0 0 chr6 152449257 152449556 -29965686 + AluSc SINE Alu 1 299 -10 1565 254 101 50 chr6 152449556 152449674 -29965568 + MER20B DNA MER1_type 235 346 -437 1328 43 0 0 chr6 152449674 152449836 -29965406 - L1PA4 LINE L1 -1 6154 5993 1565 254 101 50 chr6 152449836 152449890 -29965352 + MER20B DNA MER1_type 346 396 -387 306 105 66 26 chr6 152449890 152449966 -29965276 + L1MA4A LINE L1 6225 6303 0 1565 254 101 50 chr6 152449966 152450259 -29964983 + MER20B DNA MER1_type 396 752 -31 2465 88 41 0 chr6 152450331 152450672 -29964570 - THE1A LTR MaLR 0 355 1 270 48 24 0 chr6 152451903 152451945 -29963297 + MADE1 DNA Mariner 4 46 -34 33 0 0 0 chr6 152452072 152452105 -29963137 + AT_rich Low_complexity Low_complexity 1 33 0 707 286 107 58 chr6 152452114 152452654 -29962588 - L2 LINE L2 -54 3218 2653 2386 88 0 23 chr6 152453746 152454053 -29961189 + AluSx SINE Alu 1 300 -12 241 248 248 0 chr6 152455387 152455496 -29959746 - MIR SINE MIR -48 214 79 1927 138 0 0 chr6 152456673 152456977 -29958265 + AluSx SINE Alu 1 304 0 1607 104 4 13 chr6 152457077 152457308 -29957934 - MER30 DNA MER1_type -1 229 1 22 0 0 0 chr6 152458106 152458128 -29957114 + AT_rich Low_complexity Low_complexity 1 22 0 244 200 0 18 chr6 152458461 152458516 -29956726 + L1MD3 LINE L1 7913 7966 -29 207 256 0 0 chr6 152459330 152459373 -29955869 + MIR SINE MIR 217 259 -3 191 294 88 15 chr6 152459605 152459673 -29955569 - MIR SINE MIR -65 143 71 27 0 0 0 chr6 152460142 152460169 -29955073 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr6 152460251 152460294 -29954948 + AT_rich Low_complexity Low_complexity 1 43 0 2372 93 0 6 chr6 152460471 152460784 -29954458 - AluSx SINE Alu -1 311 1 243 232 10 10 chr6 152461162 152461261 -29953981 - L1MA7 LINE L1 -1 6290 6192 384 228 10 10 chr6 152462709 152462810 -29952432 + L1MEc LINE L1 360 460 -6261 324 284 127 67 chr6 152462850 152462916 -29952326 + L1MEc LINE L1 1454 1515 -5025 2095 152 33 28 chr6 152462916 152463278 -29951964 - THE1B LTR MaLR 0 364 1 324 284 127 67 chr6 152463278 152463479 -29951763 + L1MEc LINE L1 1515 1737 -4803 540 103 0 0 chr6 152463485 152463572 -29951670 - AluJ/FRAM SINE Alu 0 312 226 528 227 104 64 chr6 152463599 152463956 -29951286 + L1MEc LINE L1 1891 2261 -4460 1693 154 18 6 chr6 152463956 152464287 -29950955 - MER46B DNA MER2_type 0 236 27 1335 272 45 7 chr6 152464287 152464842 -29950400 + L1MEc LINE L1 2272 2847 -3874 251 299 0 26 chr6 152464898 152464975 -29950267 + MIR SINE MIR 72 146 -62 1555 240 52 44 chr6 152465082 152465441 -29949801 - L1MC4a LINE L1 -2 7806 7439 2032 131 7 0 chr6 152465441 152465732 -29949510 - AluSx SINE Alu -19 293 1 1555 240 52 44 chr6 152465732 152465946 -29949296 - L1MC4a LINE L1 -369 7439 7228 320 190 13 0 chr6 152465999 152466078 -29949164 + GA-rich Low_complexity Low_complexity 2 81 0 704 207 0 71 chr6 152466245 152466414 -29948828 + FRAM SINE Alu 1 156 -20 21 0 0 0 chr6 152467240 152467261 -29947981 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 152467303 152467329 -29947913 + AT_rich Low_complexity Low_complexity 1 26 0 205 162 37 66 chr6 152467490 152467626 -29947616 + (TTATA)n Simple_repeat Simple_repeat 3 134 0 227 217 0 0 chr6 152467701 152467761 -29947481 - L1ME LINE L1 -295 5826 5767 25 31 0 0 chr6 152467761 152467793 -29947449 + AT_rich Low_complexity Low_complexity 1 32 0 1123 198 0 15 chr6 152467839 152468036 -29947206 + AluJb SINE Alu 83 276 -36 2549 107 19 0 chr6 152468414 152468779 -29946463 - THE1C LTR MaLR 0 375 4 3081 177 157 96 chr6 152469011 152469585 -29945657 - L1MC3 LINE L1 -2 7783 7245 253 208 0 104 chr6 152469585 152469681 -29945561 - MLT1F1 LTR MaLR -439 128 43 3081 177 157 96 chr6 152469681 152470038 -29945204 - L1MC3 LINE L1 -540 7245 6695 194 277 43 0 chr6 152470125 152470172 -29945070 - L3b LINE CR1 -237 1346 1298 23 0 0 0 chr6 152471010 152471033 -29944209 + AT_rich Low_complexity Low_complexity 1 23 0 1050 223 4 14 chr6 152472269 152472547 -29942695 + L1MC3 LINE L1 7505 7779 -6 1703 190 45 8 chr6 152472722 152473074 -29942168 - MLT1A1 LTR MaLR 0 365 1 244 284 56 99 chr6 152473341 152473503 -29941739 - MIR3 SINE MIR -9 199 45 2177 127 22 22 chr6 152473507 152473868 -29941374 - THE1B LTR MaLR -1 363 3 23 0 0 0 chr6 152474135 152474158 -29941084 + AT_rich Low_complexity Low_complexity 1 23 0 501 239 66 82 chr6 152475126 152475431 -29939811 - L1MC4a LINE L1 -89 6101 5800 341 259 76 30 chr6 152475652 152475783 -29939459 - L1MC4a LINE L1 -2381 5496 5360 476 288 194 61 chr6 152475948 152476798 -29938444 - L1MC4a LINE L1 -1098 5117 4155 24319 94 10 28 chr6 152476801 152480609 -29934633 - L1PA6 LINE L1 -3 6151 2551 731 93 0 0 chr6 152480609 152480716 -29934526 + L1PA6 LINE L1 6046 6152 -2 24319 94 10 28 chr6 152480716 152483213 -29932029 - L1PA6 LINE L1 -3603 2551 11 397 337 78 22 chr6 152483250 152483619 -29931623 - L1MC4a LINE L1 -2063 4152 3721 21 36 0 0 chr6 152483821 152483849 -29931393 + AT_rich Low_complexity Low_complexity 1 28 0 306 292 136 35 chr6 152483880 152484137 -29931105 - L1MC4a LINE L1 -2812 3403 3121 771 300 35 46 chr6 152484849 152485616 -29929626 - L1MC4a LINE L1 -4576 1820 1062 414 234 74 62 chr6 152485624 152485756 -29929486 - L1MD3 LINE L1 0 8040 7911 423 0 0 0 chr6 152485756 152485803 -29929439 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 414 234 74 62 chr6 152485803 152485994 -29929248 - L1MD3 LINE L1 -129 7911 7735 564 261 75 37 chr6 152486010 152486434 -29928808 - L1MC4a LINE L1 -1012 6796 6458 330 339 97 15 chr6 152486960 152487155 -29928087 - L1MC4a LINE L1 -5400 996 786 21 0 0 0 chr6 152488163 152488184 -29927058 + AT_rich Low_complexity Low_complexity 1 21 0 338 315 18 9 chr6 152488571 152488682 -29926560 - L2 LINE L2 -34 3279 3168 770 168 94 21 chr6 152490062 152490356 -29924886 + L1MC2 LINE L1 1547 1942 -4484 2199 107 0 31 chr6 152490371 152490690 -29924552 - AluSc SINE Alu 0 309 1 9954 219 34 25 chr6 152490690 152491793 -29923449 + L1MC2 LINE L1 2077 3169 -3455 5981 95 19 0 chr6 152491793 152492533 -29922709 - L1PA10 LINE L1 -17 6151 5410 1849 164 29 0 chr6 152492533 152492813 -29922429 - AluSx SINE Alu -22 290 3 5981 95 19 0 chr6 152492813 152493209 -29922033 - L1PA10 LINE L1 -758 5410 5023 9954 219 34 25 chr6 152493209 152496610 -29918632 + L1MC2 LINE L1 3169 6612 -12 3495 139 46 33 chr6 152496672 152497555 -29917687 - MER52C LTR ERV1 0 1278 253 506 249 13 29 chr6 152497556 152497692 -29917550 + MIR3 SINE MIR 67 201 -7 735 249 75 9 chr6 152498230 152498443 -29916799 + MIR SINE MIR 36 262 0 2185 128 0 25 chr6 152498509 152498829 -29916413 - AluSx SINE Alu 0 312 1 2165 127 0 3 chr6 152498861 152499169 -29916073 + AluSx SINE Alu 1 307 -5 2182 104 0 20 chr6 152499174 152499473 -29915769 + AluSc SINE Alu 5 297 -12 418 328 40 60 chr6 152500923 152501173 -29914069 - L2 LINE L2 -470 2844 2600 938 223 5 0 chr6 152501299 152501505 -29913737 - MLT1C LTR MaLR 0 467 261 330 200 10 20 chr6 152501523 152501623 -29913619 + CT-rich Low_complexity Low_complexity 1 99 0 1037 161 21 10 chr6 152501624 152501667 -29913575 - MLT1C LTR MaLR -162 228 187 1485 204 3 45 chr6 152501667 152501975 -29913267 - AluJb SINE Alu -17 295 1 1037 161 21 10 chr6 152501975 152502157 -29913085 - MLT1C LTR MaLR -203 187 1 319 299 103 29 chr6 152502163 152502337 -29912905 + MLT1J LTR MaLR 47 233 -278 604 222 120 0 chr6 152502945 152503112 -29912130 - MLT1C LTR MaLR -189 278 92 248 200 27 0 chr6 152503855 152503930 -29911312 + A-rich Low_complexity Low_complexity 2 78 0 2368 132 8 6 chr6 152504926 152505289 -29909953 + THE1B LTR MaLR 1 364 0 2282 112 3 10 chr6 152506015 152506329 -29908913 + AluSx SINE Alu 1 312 0 947 149 89 78 chr6 152506485 152506767 -29908475 + LTR12 LTR ERV1 1 285 -429 312 216 34 0 chr6 152506768 152506856 -29908386 + LTR30 LTR ERV1 553 643 -79 605 150 0 0 chr6 152506858 152506958 -29908284 + LTR12 LTR ERV1 615 714 0 302 304 135 66 chr6 152507850 152508337 -29906905 + L1M2 LINE L1 745 1274 -5575 300 36 36 18 chr6 152508337 152508392 -29906850 + (CCCCCG)n Simple_repeat Simple_repeat 4 59 0 302 304 135 66 chr6 152508392 152508446 -29906796 + L1M2 LINE L1 1274 1323 -5526 339 25 0 0 chr6 152508664 152508704 -29906538 + (TG)n Simple_repeat Simple_repeat 1 40 0 303 237 218 0 chr6 152509806 152509962 -29905280 + Charlie2a DNA MER1_type 1 190 -2592 752 205 29 0 chr6 152510073 152510244 -29904998 + Charlie2a DNA MER1_type 1484 1659 -1203 292 195 85 51 chr6 152510263 152510381 -29904861 + Charlie2a DNA MER1_type 2724 2845 -17 1965 198 39 49 chr6 152511633 152512143 -29903099 + MLT1D LTR MaLR 1 505 0 1545 181 40 83 chr6 152512364 152512834 -29902408 - LTR7 LTR ERV1 0 450 1 582 266 146 0 chr6 152513592 152513750 -29901492 + MER5A DNA MER1_type 9 189 0 2218 111 14 0 chr6 152513831 152514128 -29901114 - AluSx SINE Alu -11 301 1 1738 169 14 0 chr6 152514447 152514742 -29900500 + AluJo SINE Alu 5 303 -9 230 302 47 0 chr6 152514960 152515046 -29900196 - L2 LINE L2 -311 2961 2872 22 0 0 0 chr6 152516142 152516164 -29899078 + AT_rich Low_complexity Low_complexity 1 22 0 2126 132 0 7 chr6 152516562 152516872 -29898370 - AluSx SINE Alu -4 308 1 679 223 86 33 chr6 152516955 152517387 -29897855 - L1MC/D LINE L1 -667 5969 5512 1832 204 118 8 chr6 152517394 152518013 -29897229 - L1MC/D LINE L1 -1102 5438 4752 1766 167 58 40 chr6 152518027 152518405 -29896837 - MSTD LTR MaLR -2 394 10 3558 168 23 92 chr6 152518441 152519212 -29896030 - L1MD1 LINE L1 -22 6220 5398 186 43 0 0 chr6 152519212 152519235 -29896007 + (TGG)n Simple_repeat Simple_repeat 3 25 0 3558 168 23 92 chr6 152519235 152519307 -29895935 - L1MD1 LINE L1 -844 5398 5444 1660 194 0 25 chr6 152519307 152519334 -29895908 - AluJo SINE Alu -5 307 281 213 39 0 0 chr6 152519334 152519360 -29895882 + (TG)n Simple_repeat Simple_repeat 1 26 0 1660 194 0 25 chr6 152519360 152519647 -29895595 - AluJo SINE Alu -31 281 1 3558 168 23 92 chr6 152519647 152519741 -29895501 - L1MD1 LINE L1 -797 5445 5346 1222 224 34 81 chr6 152519742 152520273 -29894969 - L1MC/D LINE L1 -1760 4780 4275 3689 196 17 28 chr6 152520291 152521174 -29894068 - L1MA9 LINE L1 -25 6287 5415 2110 152 56 0 chr6 152521174 152521548 -29893694 - MSTA LTR MaLR -33 395 1 2692 210 24 13 chr6 152521549 152522230 -29893012 - L1MA9 LINE L1 -743 5403 4716 * 3641 244 88 22 chr6 152522228 152522868 -29892374 - L1M2 LINE L1 -2300 4240 3644 1666 174 48 7 chr6 152522868 152523161 -29892081 - AluJb SINE Alu -7 305 1 3641 244 88 22 chr6 152523161 152524229 -29891013 - L1M2 LINE L1 -2896 3644 2648 2298 98 3 0 chr6 152524229 152524526 -29890716 - AluY SINE Alu -13 298 1 3641 244 88 22 chr6 152524526 152525378 -29889864 - L1M2 LINE L1 -3892 2648 1562 1204 273 9 28 chr6 152525523 152526017 -29889225 - L1MDb LINE L1 -4992 1417 932 2312 99 39 33 chr6 152526017 152526379 -29888863 - THE1B LTR MaLR 0 364 1 1204 273 9 28 chr6 152526379 152526415 -29888827 - L1MDb LINE L1 -5477 932 897 180 0 0 0 chr6 152526658 152526678 -29888564 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 272 269 11 11 chr6 152527026 152527119 -29888123 - L1MDb LINE L1 -5954 442 350 285 188 24 12 chr6 152527158 152527243 -29887999 - L1ME4a LINE L1 -233 5888 5803 293 206 0 0 chr6 152527273 152527336 -29887906 - L1ME4a LINE L1 -419 5702 5640 180 0 0 0 chr6 152527336 152527356 -29887886 + (T)n Simple_repeat Simple_repeat 1 20 0 2087 98 9 12 chr6 152527356 152527683 -29887559 - LTR17 LTR ERV1 -454 326 1 2319 44 0 3 chr6 152527683 152527976 -29887266 - HERV17 LTR ERV1 0 8626 8335 279 77 0 0 chr6 152527966 152528005 -29887237 - HERV17 LTR ERV1 -1078 7548 7510 * 19758 146 10 19 chr6 152528001 152529506 -29885736 - HERV17 LTR ERV1 -1479 7147 5629 195 42 0 0 chr6 152529506 152529530 -29885712 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 19758 146 10 19 chr6 152529530 152532754 -29882488 - HERV17 LTR ERV1 -2997 5629 1758 13736 89 10 14 chr6 152532738 152534745 -29880497 - HERV17 LTR ERV1 -6612 2014 17 * 3251 114 45 4 chr6 152534761 152535268 -29879974 - LTR17 LTR ERV1 0 780 253 340 271 57 45 chr6 152535958 152536135 -29879107 - LTR33 LTR ERVL 0 521 343 2150 121 7 0 chr6 152536485 152536783 -29878459 + AluSx SINE Alu 2 301 -11 681 256 18 98 chr6 152536880 152537089 -29878153 + MIR SINE MIR 5 188 -74 2229 169 51 0 chr6 152537089 152537498 -29877744 - MSTB1 LTR MaLR -2 430 1 681 256 18 98 chr6 152537498 152537565 -29877677 + MIR SINE MIR 188 259 -3 404 277 51 51 chr6 152537678 152537815 -29877427 + MIR SINE MIR 8 144 -118 326 107 18 0 chr6 152537824 152537880 -29877362 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 5267 131 12 1 chr6 152538043 152538900 -29876342 - Tigger1 DNA MER2_type -1 2417 1552 24 0 0 0 chr6 152539532 152539556 -29875686 + AT_rich Low_complexity Low_complexity 1 24 0 8821 108 52 36 chr6 152539564 152539660 -29875582 - Tigger1 DNA MER2_type -852 1566 1473 1693 175 0 45 chr6 152539660 152539974 -29875268 - AluJo SINE Alu -12 300 1 8821 108 52 36 chr6 152539974 152540323 -29874919 - Tigger1 DNA MER2_type -945 1473 1131 1715 195 0 3 chr6 152540323 152540620 -29874622 + AluJo SINE Alu 1 296 -16 8821 108 52 36 chr6 152540620 152541662 -29873580 - Tigger1 DNA MER2_type -1287 1131 54 356 315 80 98 chr6 152542594 152543377 -29871865 + HAL1b LINE L1 445 686 -662 2389 93 0 3 chr6 152543451 152543761 -29871481 - AluSc SINE Alu 0 309 1 3014 294 68 59 chr6 152544841 152546305 -29868937 + L2 LINE L2 957 2433 -881 2290 102 3 0 chr6 152548237 152548540 -29866702 - AluSx SINE Alu -8 304 1 1183 117 0 6 chr6 152549190 152549370 -29865872 + L1PB1 LINE L1 5972 6150 -1 688 226 7 14 chr6 152549424 152549570 -29865672 + MER5B DNA MER1_type 31 175 -3 21 0 0 0 chr6 152549679 152549700 -29865542 + AT_rich Low_complexity Low_complexity 1 21 0 336 108 39 39 chr6 152550013 152550143 -29865099 + (TATAA)n Simple_repeat Simple_repeat 5 134 0 299 352 96 0 chr6 152550653 152550778 -29864464 - L2 LINE L2 0 3272 3136 2590 11 0 0 chr6 152551052 152551335 -29863907 - AluYa5 SINE Alu -1 310 28 1702 154 24 24 chr6 152552185 152552478 -29862764 + AluJo SINE Alu 14 306 -6 264 375 54 0 chr6 152553518 152553546 -29861696 + L2 LINE L2 3088 3113 -159 2512 159 56 11 chr6 152553546 152553993 -29861249 + MLT1C LTR MaLR 1 467 0 264 375 54 0 chr6 152553993 152554132 -29861110 + L2 LINE L2 3113 3264 -8 1512 192 87 26 chr6 152554275 152554619 -29860623 - MLT1A1 LTR MaLR 0 365 1 180 176 20 98 chr6 152556073 152556124 -29859118 - MER5A DNA MER1_type -75 114 68 1745 256 70 53 chr6 152556425 152558054 -29857188 - L1ME3 LINE L1 -43 6119 4456 863 338 149 31 chr6 152558697 152559807 -29855435 + L2 LINE L2 1731 2970 -344 326 390 32 0 chr6 152560036 152560159 -29855083 - L2 LINE L2 -44 3228 3102 938 157 0 70 chr6 152560598 152560783 -29854459 + AluJb SINE Alu 138 309 -3 2327 96 0 0 chr6 152560878 152561180 -29854062 + AluSg SINE Alu 1 302 -8 2399 78 0 0 chr6 152561333 152561629 -29853613 - AluY SINE Alu -15 296 1 381 327 27 13 chr6 152562387 152562537 -29852705 + MIR SINE MIR 108 259 -3 324 307 94 22 chr6 152562543 152562862 -29852380 - L1ME4a LINE L1 -232 5889 5548 363 347 27 0 chr6 152563136 152563283 -29851959 + MIR SINE MIR 90 240 -22 358 340 40 0 chr6 152563531 152563631 -29851611 - L2 LINE L2 -27 3245 3142 398 171 295 9 chr6 152563955 152564060 -29851182 - L2 LINE L2 0 3313 3179 768 138 33 13 chr6 152564165 152564317 -29850925 - LTR32 LTR ERVL 0 471 317 1771 148 33 15 chr6 152564324 152564656 -29850586 - LTR32 LTR ERVL -119 352 15 1211 265 159 19 chr6 152564781 152565348 -29849894 - L2 LINE L2 -558 2756 2111 2096 88 4 4 chr6 152565757 152566029 -29849213 + AluSc SINE Alu 24 295 -14 1847 163 0 0 chr6 152566419 152566696 -29848546 - AluJb SINE Alu -2 310 34 2292 102 0 13 chr6 152567484 152567789 -29847453 - AluSp SINE Alu -12 301 1 2661 96 3 8 chr6 152567898 152568264 -29846978 - THE1B LTR MaLR 0 364 1 3550 104 22 4 chr6 152568329 152568831 -29846411 + MER9 LTR ERVK 1 511 0 214 160 40 20 chr6 152569025 152569075 -29846167 + CT-rich Low_complexity Low_complexity 3 53 0 187 304 22 0 chr6 152570775 152570821 -29844421 - L2 LINE L2 -33 3239 3193 504 317 57 32 chr6 152571058 152571304 -29843938 - L1ME3A LINE L1 -223 5947 5696 391 267 50 25 chr6 152571682 152571843 -29843399 + LTR41 LTR ERVL 24 188 -585 2081 113 38 30 chr6 152572147 152572519 -29842723 - THE1C LTR MaLR 0 375 1 195 164 14 27 chr6 152574377 152574450 -29840792 + (TA)n Simple_repeat Simple_repeat 1 72 0 2125 151 0 0 chr6 152575244 152575543 -29839699 - AluSx SINE Alu -13 299 1 2426 94 0 0 chr6 152576565 152576874 -29838368 + AluY SINE Alu 1 309 -2 464 217 22 0 chr6 152577337 152577475 -29837767 - L1MEc LINE L1 -3639 2576 2436 2148 122 3 0 chr6 152577489 152577784 -29837458 - AluSc SINE Alu -13 296 1 2102 130 0 13 chr6 152577990 152578290 -29836952 + AluSg SINE Alu 1 296 -14 1633 93 8 20 chr6 152578290 152578527 -29836715 - L1PA13 LINE L1 -19 6144 5909 578 239 87 15 chr6 152578530 152578869 -29836373 - L1MEc LINE L1 -3786 2429 2094 1902 246 67 12 chr6 152578887 152579469 -29835773 + MLT1E2 LTR MaLR 13 626 0 997 214 87 57 chr6 152579484 152579909 -29835333 - L1MEc LINE L1 -4315 2081 1644 972 293 70 38 chr6 152579939 152580978 -29834264 - L1MEc LINE L1 -4825 1571 499 285 252 118 8 chr6 152580990 152581172 -29834070 + MLT1E1 LTR MaLR 1 265 -389 250 245 32 11 chr6 152581196 152581290 -29833952 - L1MEc LINE L1 -6250 146 51 506 275 98 18 chr6 152581999 152582217 -29833025 - L1ME LINE L1 -344 5818 5619 2079 168 6 0 chr6 152582217 152582580 -29832662 + MER47A DNA MER2_type 2 366 0 506 275 98 18 chr6 152582580 152582781 -29832461 - L1ME LINE L1 -543 5619 5369 1974 150 31 24 chr6 152584647 152585028 -29830214 - MLT1B LTR MaLR -2 388 5 245 186 29 29 chr6 152585987 152586057 -29829185 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 2401 87 0 0 chr6 152586167 152586467 -29828775 + AluY SINE Alu 1 300 -11 2753 80 11 3 chr6 152587511 152587872 -29827370 - THE1B LTR MaLR 0 364 1 33 0 0 0 chr6 152589479 152589512 -29825730 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 152589600 152589629 -29825613 + AT_rich Low_complexity Low_complexity 1 29 0 1242 221 37 27 chr6 152589630 152589928 -29825314 - AluJo SINE Alu -11 301 1 2050 63 0 20 chr6 152590828 152591081 -29824161 + AluY SINE Alu 59 306 -5 279 0 0 0 chr6 152591081 152591112 -29824130 + (TA)n Simple_repeat Simple_repeat 1 31 0 194 314 47 142 chr6 152591849 152592123 -29823119 - L2 LINE L2 -30 3242 2995 763 296 115 13 chr6 152592174 152592478 -29822764 + L2 LINE L2 2972 3306 -7 1899 159 3 0 chr6 152592591 152592880 -29822362 - AluJb SINE Alu -22 290 1 444 257 40 97 chr6 152592906 152593256 -29821986 - MLT1L LTR MaLR -166 449 120 248 158 18 0 chr6 152594069 152594126 -29821116 + CT-rich Low_complexity Low_complexity 1 58 0 203 191 71 0 chr6 152595429 152595471 -29819771 - L2 LINE L2 -18 3254 3210 * 426 263 20 116 chr6 152595438 152595689 -29819553 - MIR SINE MIR -24 238 12 1459 176 50 93 chr6 152595689 152595775 -29819467 + MER7A DNA MER2_type 1 89 -2949 1833 164 0 26 chr6 152595775 152596087 -29819155 + AluJb SINE Alu 1 304 -8 1459 176 50 93 chr6 152596087 152596100 -29819142 + MER7A DNA MER2_type 89 101 -2937 1496 205 30 7 chr6 152596100 152596402 -29818840 + AluJo SINE Alu 1 309 -3 1459 176 50 93 chr6 152596402 152596665 -29818577 + MER7A DNA MER2_type 101 346 0 2427 73 0 22 chr6 152596801 152597118 -29818124 + AluY SINE Alu 1 310 -1 2253 94 0 3 chr6 152600905 152601203 -29814039 - AluSg SINE Alu -13 297 1 776 144 8 0 chr6 152601525 152601643 -29813599 + AluJb SINE Alu 1 119 -193 341 293 108 52 chr6 152601650 152601862 -29813380 + MIR SINE MIR 9 232 -30 343 299 109 0 chr6 152601913 152602050 -29813192 + L1MD2 LINE L1 5913 6064 -295 186 43 0 0 chr6 152602066 152602089 -29813153 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 633 218 124 19 chr6 152602094 152602377 -29812865 + L1MD3 LINE L1 6038 7977 -18 1781 148 0 39 chr6 152602386 152602704 -29812538 - AluSx SINE Alu 0 318 12 353 310 82 50 chr6 152602736 152603078 -29812164 - L2 LINE L2 -64 3249 2897 191 330 123 34 chr6 152603356 152603592 -29811650 - L2 LINE L2 -492 2822 2566 348 313 62 22 chr6 152603697 152603876 -29811366 + L1MC/D LINE L1 5623 5808 -2000 350 280 140 27 chr6 152604164 152604457 -29810785 - LTR16A LTR ERVL -6 444 119 40 83 0 0 chr6 152604542 152604638 -29810604 + GC_rich Low_complexity Low_complexity 1 96 0 460 275 57 60 chr6 152605055 152605440 -29809802 - L1MEd LINE L1 -5735 384 1 26 0 0 0 chr6 152605494 152605520 -29809722 + AT_rich Low_complexity Low_complexity 1 26 0 761 330 85 40 chr6 152606692 152607141 -29808101 - L2 LINE L2 0 3272 2804 422 200 71 0 chr6 152608848 152608933 -29806309 + MER63 DNA MER1_type 1 717 -119 3003 244 57 57 chr6 152608939 152610300 -29804942 + L1M4 LINE L1 3355 4714 -1432 731 186 32 13 chr6 152610302 152610458 -29804784 + MLT1E1 LTR MaLR 1 159 -495 667 322 39 20 chr6 152610466 152610823 -29804419 - MER115 DNA AcHobo -279 414 51 233 343 29 0 chr6 152610875 152610945 -29804297 - MER5A DNA MER1_type -92 97 26 28 29 0 0 chr6 152611895 152611930 -29803312 + AT_rich Low_complexity Low_complexity 1 35 0 439 306 210 15 chr6 152614232 152614503 -29800739 + L2 LINE L2 2949 3272 0 484 247 135 17 chr6 152614564 152614742 -29800500 - MIR SINE MIR -32 230 32 1314 246 103 8 chr6 152615519 152616026 -29799216 + Zaphod DNA AcHobo 307 861 -3170 2776 32 0 18 chr6 152616078 152616417 -29798825 - L1PA4 LINE L1 0 6155 5823 1266 177 19 5 chr6 152616435 152616644 -29798598 + AluJb SINE Alu 84 295 -17 434 168 20 10 chr6 152616733 152616834 -29798408 + Zaphod DNA AcHobo 3596 3697 -334 33 25 0 0 chr6 152616834 152616874 -29798368 + AT_rich Low_complexity Low_complexity 1 40 0 377 188 31 0 chr6 152616910 152617006 -29798236 + Zaphod DNA AcHobo 3856 3954 -77 1944 150 14 6 chr6 152617137 152617503 -29797739 - L1MA5 LINE L1 -2 6298 5930 4263 156 42 59 chr6 152617504 152618239 -29797003 - L1 LINE L1 -2063 4083 3330 272 95 0 0 chr6 152618239 152618281 -29796961 - tRNA-Cys-TGC tRNA tRNA -32 43 2 4263 156 42 59 chr6 152618281 152618583 -29796659 - L1 LINE L1 -2816 3330 3024 1095 175 7 35 chr6 152618615 152618632 -29796610 + L1M3c LINE L1 1400 1416 -4776 608 38 0 0 chr6 152618632 152618711 -29796531 + L1PB1 LINE L1 6073 6151 0 1095 175 7 35 chr6 152618711 152618997 -29796245 + L1M3c LINE L1 1416 1673 -4519 * 1697 111 0 4 chr6 152618981 152619242 -29796000 - L1PB1 LINE L1 -110 6041 5782 511 40 89 0 chr6 152619242 152619366 -29795876 + (TA)n Simple_repeat Simple_repeat 2 136 0 3531 120 0 10 chr6 152619368 152620098 -29795144 - L1PB1 LINE L1 -360 5791 5068 12201 159 65 31 chr6 152620136 152620894 -29794348 - L1PBa LINE L1 -2238 4624 3893 1993 131 7 24 chr6 152620894 152621185 -29794057 - AluSx SINE Alu -21 291 6 12201 159 65 31 chr6 152621185 152621984 -29793258 - L1PBa LINE L1 -2969 3893 3123 2399 101 0 0 chr6 152621984 152622291 -29792951 + AluSg SINE Alu 1 307 -3 12201 159 65 31 chr6 152622291 152624584 -29790658 - L1PBa LINE L1 -3739 3123 636 1022 151 31 0 chr6 152624586 152624778 -29790464 - L1PBa LINE L1 -6663 200 3 3282 244 204 33 chr6 152624794 152626528 -29788714 - L1M2 LINE L1 -4809 2040 11 2319 183 15 28 chr6 152626591 152627061 -29788181 + MER88 LTR ERVL 1 464 0 22 56 0 0 chr6 152627571 152627607 -29787635 + AT_rich Low_complexity Low_complexity 1 36 0 240 321 37 0 chr6 152627679 152627760 -29787482 + L2 LINE L2 3189 3272 0 185 290 10 100 chr6 152627980 152628080 -29787162 - L2 LINE L2 -4 3268 3178 22 0 0 0 chr6 152628304 152628326 -29786916 + AT_rich Low_complexity Low_complexity 1 22 0 282 299 5 49 chr6 152629488 152629672 -29785570 + GA-rich Low_complexity Low_complexity 3 178 0 198 71 0 0 chr6 152629763 152629791 -29785451 + (TC)n Simple_repeat Simple_repeat 1 28 0 1837 169 0 41 chr6 152629791 152630111 -29785131 - AluJo SINE Alu -5 307 1 296 294 0 0 chr6 152630118 152630186 -29785056 + L2 LINE L2 3246 3313 0 668 278 162 52 chr6 152630200 152630588 -29784654 + L2 LINE L2 2883 3313 0 2269 108 0 0 chr6 152630974 152631271 -29783971 - AluSc SINE Alu -12 297 1 374 315 28 28 chr6 152631815 152631958 -29783284 - L3 LINE CR1 -1 1576 1434 201 240 0 0 chr6 152631997 152632047 -29783195 - L3 LINE CR1 -346 1231 1182 306 397 20 10 chr6 152632313 152632517 -29782725 + L2 LINE L2 2470 2675 -639 2259 108 0 0 chr6 152632693 152632988 -29782254 + AluSc SINE Alu 1 295 -14 223 277 106 11 chr6 152633462 152633556 -29781686 + L2 LINE L2 3170 3272 0 345 323 105 35 chr6 152633581 152633810 -29781432 - L3 LINE CR1 -1156 421 177 207 361 17 59 chr6 152634447 152634566 -29780676 + MIR3 SINE MIR 84 197 -11 207 204 0 0 chr6 152634741 152634785 -29780457 + (TTAAA)n Simple_repeat Simple_repeat 2 45 0 1414 140 3 137 chr6 152636817 152637160 -29778082 - AluJo SINE Alu -15 297 1 2006 186 11 11 chr6 152637600 152637965 -29777277 - MLT1A1 LTR MaLR 0 365 1 218 311 0 16 chr6 152638691 152638752 -29776490 - MER5B DNA MER1_type -58 120 61 32 26 0 0 chr6 152639053 152639092 -29776150 + AT_rich Low_complexity Low_complexity 1 39 0 309 322 0 0 chr6 152639433 152639520 -29775722 + GA-rich Low_complexity Low_complexity 1 87 0 2245 113 0 3 chr6 152640101 152640401 -29774841 + AluSx SINE Alu 1 299 -13 325 274 75 41 chr6 152640412 152640558 -29774684 - L2 LINE L2 -5 3308 3158 334 343 119 5 chr6 152640704 152640888 -29774354 - MIR SINE MIR -57 205 3 226 200 20 0 chr6 152641288 152641338 -29773904 + MIR SINE MIR 210 260 -2 216 247 206 0 chr6 152641564 152641661 -29773581 - MIR SINE MIR -43 219 103 2186 146 26 35 chr6 152641864 152642241 -29773001 - THE1C LTR MaLR 0 375 2 255 341 53 38 chr6 152643018 152643150 -29772092 - L2 LINE L2 -431 2883 2750 414 0 0 0 chr6 152644129 152644175 -29771067 + (CA)n Simple_repeat Simple_repeat 2 47 0 586 234 51 13 chr6 152645294 152645452 -29769790 + MLT1J2 LTR MaLR 32 195 -255 302 189 0 0 chr6 152645564 152645617 -29769625 + MLT1J2 LTR MaLR 392 444 -6 633 245 174 44 chr6 152646314 152646715 -29768527 - MLT1J LTR MaLR -31 480 1 823 221 54 38 chr6 152646958 152647274 -29767968 + L1MC5 LINE L1 7605 7925 -36 508 320 194 27 chr6 152648211 152648840 -29766402 + L2 LINE L2 1712 2445 -869 1133 154 13 0 chr6 152648992 152649148 -29766094 + FRAM SINE Alu 2 159 -7 335 272 95 4 chr6 152649720 152649892 -29765350 - MIR SINE MIR -3 259 1 386 296 0 0 chr6 152651003 152651101 -29764141 - MIR SINE MIR -164 98 1 446 328 65 58 chr6 152651359 152651652 -29763590 + L3 LINE CR1 1281 1575 -2 201 316 94 76 chr6 152651650 152651892 -29763350 - L2 LINE L2 -1442 1872 1619 * 1679 176 102 130 chr6 152651892 152652460 -29762782 - MLT1H1 LTR MaLR 0 555 4 201 316 94 76 chr6 152652460 152652610 -29762632 - L2 LINE L2 -1695 1619 1473 192 294 15 15 chr6 152654550 152654618 -29760624 + L3 LINE CR1 322 389 -1188 234 0 0 0 chr6 152655298 152655324 -29759918 + (CA)n Simple_repeat Simple_repeat 2 27 0 2343 189 38 41 chr6 152657060 152657567 -29757675 + MLT1D LTR MaLR 1 505 0 336 220 12 116 chr6 152657612 152657747 -29757495 + L2 LINE L2 3159 3274 -39 2841 97 16 3 chr6 152657747 152658117 -29757125 + THE1C LTR MaLR 1 375 0 336 220 12 116 chr6 152658117 152658154 -29757088 + L2 LINE L2 3274 3313 0 658 295 52 10 chr6 152658824 152659017 -29756225 - MIR SINE MIR -49 213 13 229 275 113 28 chr6 152659026 152659168 -29756074 - L2 LINE L2 -42 3271 3118 2174 131 0 0 chr6 152659389 152659686 -29755556 + AluSx SINE Alu 1 297 -15 1151 152 37 55 chr6 152659761 152659978 -29755264 - MER20 DNA MER1_type 0 219 7 261 361 44 25 chr6 152661000 152661158 -29754084 - L2 LINE L2 -1 3271 3111 2325 116 0 0 chr6 152661284 152661595 -29753647 - AluSx SINE Alu -1 311 1 27 0 0 0 chr6 152661637 152661664 -29753578 + AT_rich Low_complexity Low_complexity 1 27 0 568 269 28 7 chr6 152662043 152662204 -29753038 + MIR SINE MIR 16 191 -62 380 307 157 27 chr6 152662332 152662909 -29752333 + L2 LINE L2 2623 3272 0 811 261 43 128 chr6 152663103 152663593 -29751649 + MLT1J LTR MaLR 3 442 -69 1196 229 9 5 chr6 152663593 152663816 -29751426 - MER58A DNA MER1_type 0 224 1 811 261 43 128 chr6 152663816 152663881 -29751361 + MLT1J LTR MaLR 442 511 0 326 330 0 0 chr6 152664435 152664538 -29750704 + MER117 DNA MER1_type 1 103 -94 234 371 10 31 chr6 152664686 152664783 -29750459 - MIR3 SINE MIR -49 159 65 2027 138 0 0 chr6 152665296 152665587 -29749655 - AluSx SINE Alu -21 291 1 482 319 44 6 chr6 152665588 152665770 -29749472 - L1ME LINE L1 -441 5680 5492 328 252 130 35 chr6 152666977 152667092 -29748150 + MIR SINE MIR 16 141 -67 885 178 0 0 chr6 152667102 152667280 -29747962 + FRAM SINE Alu 1 178 0 762 238 174 44 chr6 152667890 152668234 -29747008 + L2 LINE L2 2925 3313 0 312 340 41 31 chr6 152668250 152668402 -29746840 - MIR SINE MIR -70 138 6 547 292 43 0 chr6 152668514 152668699 -29746543 - L3 LINE CR1 -96 1481 1289 243 61 0 0 chr6 152668763 152668796 -29746446 + (TTG)n Simple_repeat Simple_repeat 2 34 0 201 297 0 0 chr6 152669330 152669394 -29745848 - MIR SINE MIR -16 246 183 254 300 0 0 chr6 152669524 152669604 -29745638 + MIR SINE MIR 182 261 -1 344 368 23 17 chr6 152669711 152669885 -29745357 + MIR3 SINE MIR 3 177 -31 328 280 76 32 chr6 152670228 152670385 -29744857 + MIR3 SINE MIR 4 167 -41 805 229 0 0 chr6 152670945 152671102 -29744140 + MER5A DNA MER1_type 1 157 -32 28 48 0 0 chr6 152671601 152671643 -29743599 + AT_rich Low_complexity Low_complexity 1 42 0 293 286 116 42 chr6 152671853 152672094 -29743148 + L2 LINE L2 2165 2423 -891 291 313 62 0 chr6 152672169 152672265 -29742977 + MIR SINE MIR 46 147 -115 187 355 104 36 chr6 152672517 152672931 -29742311 + L2 LINE L2 2521 2962 -352 2155 98 3 20 chr6 152674025 152674322 -29740920 - AluSc SINE Alu -17 292 1 1643 100 17 17 chr6 152674659 152674889 -29740353 - MER30 DNA MER1_type 0 230 1 180 0 0 0 chr6 152677563 152677583 -29737659 + (A)n Simple_repeat Simple_repeat 1 20 0 360 163 41 41 chr6 152678173 152678296 -29736946 + Charlie5 DNA MER1_type 2396 2518 -94 21 71 0 0 chr6 152678404 152678446 -29736796 + AT_rich Low_complexity Low_complexity 1 42 0 339 280 28 19 chr6 152678725 152678832 -29736410 + MIR SINE MIR 47 154 -108 183 246 116 43 chr6 152678929 152678998 -29736244 + L2 LINE L2 3199 3272 0 305 319 44 9 chr6 152679203 152679316 -29735926 - L2 LINE L2 -222 3050 2934 1040 223 71 26 chr6 152679331 152679641 -29735601 - MER33 DNA MER1_type -7 317 1 247 317 99 29 chr6 152679695 152679938 -29735304 - L2 LINE L2 -436 2878 2619 21 57 0 0 chr6 152681055 152681090 -29734152 + AT_rich Low_complexity Low_complexity 1 35 0 2307 166 5 63 chr6 152681215 152681643 -29733599 - MER57A LTR ERV1 0 403 1 270 338 150 6 chr6 152682817 152682977 -29732265 - L2 LINE L2 0 3272 3090 876 211 99 47 chr6 152683418 152683760 -29731482 - MER39 LTR ERV1 -41 666 307 563 333 30 26 chr6 152684669 152684903 -29730339 - MIR SINE MIR -26 236 2 275 274 16 0 chr6 152685005 152685067 -29730175 - L2 LINE L2 0 3313 3251 311 266 75 21 chr6 152685168 152685262 -29729980 - L2 LINE L2 0 3272 3174 219 343 121 14 chr6 152685293 152685433 -29729809 + MIR3 SINE MIR 32 186 -22 698 278 69 81 chr6 152685555 152685707 -29729535 - MLT1L LTR MaLR 0 615 463 2231 92 0 0 chr6 152685707 152686019 -29729223 - AluSx SINE Alu 0 312 1 698 278 69 81 chr6 152686019 152686300 -29728942 - MLT1L LTR MaLR -152 463 186 905 256 0 0 chr6 152687845 152688036 -29727206 + MIR SINE MIR 3 193 -69 217 333 49 0 chr6 152688081 152688183 -29727059 - MIR SINE MIR -51 211 105 583 230 136 66 chr6 152688391 152688678 -29726564 - MER5C DNA MER1_type -11 313 7 252 186 34 51 chr6 152689326 152689385 -29725857 - L2 LINE L2 -1 3312 3255 * 723 211 6 30 chr6 152689354 152689497 -29725745 - MIR SINE MIR -22 240 100 1717 131 156 28 chr6 152689497 152689817 -29725425 + MER46B DNA MER2_type 1 236 0 723 211 6 30 chr6 152689817 152689839 -29725403 - MIR SINE MIR -162 100 79 519 262 54 35 chr6 152690189 152690394 -29724848 - MIR SINE MIR -56 206 1 571 237 6 45 chr6 152691618 152691795 -29723447 - MER117 DNA MER1_type -19 178 9 1263 119 46 5 chr6 152693691 152693885 -29721357 + MER30 DNA MER1_type 1 202 -28 2449 106 48 31 chr6 152693993 152694351 -29720891 - THE1B LTR MaLR 0 364 1 399 233 33 0 chr6 152694438 152694528 -29720714 - MIR SINE MIR 0 262 170 1746 249 64 39 chr6 152694623 152694918 -29720324 - MER77 LTR ERV1 -4 601 286 1826 125 4 4 chr6 152694918 152695174 -29720068 - AluSc SINE Alu -19 290 35 1746 249 64 39 chr6 152695174 152695413 -29719829 - MER77 LTR ERV1 -319 286 54 609 238 0 0 chr6 152695433 152695559 -29719683 - MIR SINE MIR -108 154 29 201 282 13 39 chr6 152696537 152696615 -29718627 - MER5A DNA MER1_type -79 110 35 * 245 329 24 0 chr6 152696550 152696632 -29718610 + MER5B DNA MER1_type 89 172 -6 1048 195 116 122 chr6 152698209 152698494 -29716748 + MLT1D LTR MaLR 27 312 -193 1393 106 83 28 chr6 152698494 152698712 -29716530 - MER30 DNA MER1_type 0 230 1 1048 195 116 122 chr6 152698712 152698844 -29716398 + MLT1D LTR MaLR 312 443 -62 2202 91 3 0 chr6 152698844 152699130 -29716112 - AluSx SINE Alu -25 287 1 1048 195 116 122 chr6 152699130 152699193 -29716049 + MLT1D LTR MaLR 443 505 0 197 242 42 9 chr6 152699336 152699416 -29715826 + L2 LINE L2 3148 3313 0 2176 106 0 10 chr6 152699883 152700184 -29715058 - AluSq SINE Alu 0 313 16 2005 243 112 17 chr6 152700451 152700986 -29714256 - MLT1E LTR MaLR -7 586 1 1402 152 16 91 chr6 152702510 152702819 -29712423 + AluJb SINE Alu 1 286 -26 1898 185 44 26 chr6 152703029 152703412 -29711830 - MLT1B LTR MaLR 0 390 1 25 31 0 0 chr6 152703556 152703588 -29711654 + AT_rich Low_complexity Low_complexity 1 32 0 195 321 12 24 chr6 152704202 152704286 -29710956 - L3 LINE CR1 -712 865 783 21 36 0 0 chr6 152704559 152704587 -29710655 + AT_rich Low_complexity Low_complexity 1 28 0 215 31 31 0 chr6 152705112 152705144 -29710098 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 239 167 33 17 chr6 152705336 152705396 -29709846 + T-rich Low_complexity Low_complexity 2 62 0 202 156 0 0 chr6 152705969 152706001 -29709241 + MIR SINE MIR 118 149 -113 538 162 44 73 chr6 152706525 152706661 -29708581 + MSTB1 LTR MaLR 22 153 -279 252 222 0 0 chr6 152706666 152706711 -29708531 - MSTB1 LTR MaLR -224 208 164 1028 171 28 33 chr6 152706845 152707056 -29708186 + MSTB1 LTR MaLR 223 432 0 518 315 78 35 chr6 152707056 152707402 -29707840 + L2 LINE L2 1903 2263 -1051 266 286 136 43 chr6 152707523 152707663 -29707579 - L2 LINE L2 -838 2476 2324 2186 89 40 30 chr6 152707793 152708097 -29707145 - AluY SINE Alu -3 308 2 793 260 26 13 chr6 152708370 152708597 -29706645 - MIR SINE MIR 0 262 33 2208 114 0 0 chr6 152708912 152709210 -29706032 - AluSx SINE Alu -14 298 1 209 246 0 33 chr6 152711015 152711076 -29704166 + CT-rich Low_complexity Low_complexity 3 61 0 229 281 88 12 chr6 152711306 152711466 -29703776 - L1ME4a LINE L1 -17 6104 5933 371 259 38 38 chr6 152711523 152711654 -29703588 - L1ME4a LINE L1 -302 5819 5689 23 0 0 0 chr6 152712760 152712783 -29702459 + AT_rich Low_complexity Low_complexity 1 23 0 2375 90 3 0 chr6 152713846 152714147 -29701095 + AluSg SINE Alu 1 302 -8 1221 120 80 5 chr6 152714225 152714425 -29700817 + L1MA9 LINE L1 6098 6312 0 1482 183 19 8 chr6 152714440 152714697 -29700545 + AluJo SINE Alu 1 260 -52 1426 245 28 23 chr6 152716558 152716991 -29698251 + LTR16A LTR ERVL 16 450 0 2400 244 31 23 chr6 152717067 152717752 -29697490 + L1ME3A LINE L1 5461 6150 -20 234 274 204 9 chr6 152717897 152718010 -29697232 - MIR3 SINE MIR -70 138 4 261 244 0 0 chr6 152718570 152718656 -29696586 + (TG)n Simple_repeat Simple_repeat 1 86 0 308 253 101 68 chr6 152720018 152720395 -29694847 - MLT1I LTR MaLR 0 450 39 245 345 17 51 chr6 152720517 152720625 -29694617 - L2 LINE L2 -459 2855 2754 2301 97 0 0 chr6 152720625 152720914 -29694328 + AluSg SINE Alu 1 289 -21 245 345 17 51 chr6 152720914 152720982 -29694260 - L2 LINE L2 -560 2754 2685 2467 103 39 31 chr6 152721312 152721671 -29693571 - THE1B LTR MaLR -2 362 1 695 256 62 38 chr6 152722027 152722238 -29693004 + MIR SINE MIR 21 236 -26 195 42 0 0 chr6 152722446 152722470 -29692772 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 638 311 59 17 chr6 152722486 152722736 -29692506 + MIR SINE MIR 4 262 0 1144 222 113 65 chr6 152726049 152726230 -29689012 - MER113 DNA MER1_type? 0 521 350 2393 96 0 0 chr6 152726230 152726542 -29688700 - AluSx SINE Alu 0 312 1 1144 222 113 65 chr6 152726542 152726796 -29688446 - MER113 DNA MER1_type? -171 350 60 705 180 234 84 chr6 152726796 152727035 -29688207 + ORSL DNA AcHobo 1 275 0 1144 222 113 65 chr6 152727035 152727058 -29688184 - MER113 DNA MER1_type? -461 60 40 275 368 40 0 chr6 152727080 152727205 -29688037 - MIR3 SINE MIR -48 160 31 5224 92 9 1 chr6 152727988 152728662 -29686580 + L1PA14 LINE L1 5482 6160 -1 582 253 42 18 chr6 152728917 152729083 -29686159 + MIR SINE MIR 20 189 -73 356 283 18 18 chr6 152729092 152729205 -29686037 - L2 LINE L2 -15 3298 3186 21 0 0 0 chr6 152729914 152729935 -29685307 + AT_rich Low_complexity Low_complexity 1 21 0 736 260 161 43 chr6 152731190 152731656 -29683586 + L1ME4a LINE L1 5574 6094 -27 1806 123 0 8 chr6 152733153 152733413 -29681829 + AluSq SINE Alu 1 258 -55 498 243 19 0 chr6 152733654 152733757 -29681485 + MARNA DNA Mariner 62 166 -420 440 327 46 28 chr6 152735046 152735263 -29679979 - MIR SINE MIR -26 236 16 263 322 83 0 chr6 152735392 152735513 -29679729 + MIR SINE MIR 106 236 -26 225 0 0 0 chr6 152735513 152735538 -29679704 + (A)n Simple_repeat Simple_repeat 1 25 0 3493 224 16 24 chr6 152736416 152737326 -29677916 - MER4D LTR ERV1 0 903 1 3985 142 14 22 chr6 152737871 152738588 -29676654 - MER50 LTR ERV1 -23 711 1 1064 233 139 5 chr6 152739499 152739872 -29675370 - L2 LINE L2 -388 2926 2504 385 247 77 82 chr6 152739884 152739926 -29675316 + MIR SINE MIR 54 95 -167 1920 170 22 89 chr6 152739926 152740466 -29674776 + MLT1D LTR MaLR 1 504 -1 385 247 77 82 chr6 152740466 152740605 -29674637 + MIR SINE MIR 95 234 -28 211 263 162 20 chr6 152740597 152740696 -29674546 + L2 LINE L2 2865 2977 -336 * 402 211 95 0 chr6 152740773 152740868 -29674374 + MIR SINE MIR 89 192 -70 430 308 128 33 chr6 152741679 152742134 -29673108 + L2 LINE L2 1322 1819 -1495 820 269 50 38 chr6 152742153 152742391 -29672851 + MIR SINE MIR 1 241 -21 1242 311 140 28 chr6 152742393 152743494 -29671748 + L2 LINE L2 1851 3087 -185 300 91 0 0 chr6 152743826 152743870 -29671372 + (CA)n Simple_repeat Simple_repeat 2 45 0 820 323 50 50 chr6 152744687 152745087 -29670155 - L2 LINE L2 -1 3271 2872 732 158 0 0 chr6 152745228 152745399 -29669843 + (TTGG)n Simple_repeat Simple_repeat 4 174 0 236 306 56 28 chr6 152745484 152745592 -29669650 + L2 LINE L2 2643 2753 -561 779 177 88 7 chr6 152746319 152746538 -29668704 + AluJo SINE Alu 1 287 -25 242 50 75 0 chr6 152747285 152747325 -29667917 - L1M4 LINE L1 -416 5762 5720 556 281 102 51 chr6 152747546 152747881 -29667361 + L2 LINE L2 2921 3272 0 22 35 0 0 chr6 152748391 152748420 -29666822 + AT_rich Low_complexity Low_complexity 1 29 0 631 101 0 30 chr6 152748716 152748815 -29666427 - AluY SINE Alu 0 311 216 235 86 0 0 chr6 152749183 152749218 -29666024 + THE1-int LTR MaLR 783 817 -763 2125 129 44 16 chr6 152749218 152749582 -29665660 - THE1C LTR MaLR -1 374 1 210 128 0 0 chr6 152749952 152749991 -29665251 + (T)n Simple_repeat Simple_repeat 1 39 0 7526 32 0 0 chr6 152749998 152750916 -29664326 - L1PA3 LINE L1 -3 6152 5237 42466 34 5 2 chr6 152751016 152757003 -29658239 - L1PA3 LINE L1 -146 6009 3 34 0 0 0 chr6 152757576 152757610 -29657632 + AT_rich Low_complexity Low_complexity 1 34 0 817 212 34 61 chr6 152757613 152758109 -29657133 + L1MCa LINE L1 1443 2012 -4414 9326 202 53 15 chr6 152758111 152759886 -29655356 + L1MA3 LINE L1 2229 3935 -2650 997 96 0 96 chr6 152759886 152760085 -29655157 + L1MA4A LINE L1 6123 6302 -1 9326 202 53 15 chr6 152760085 152762492 -29652750 + L1MA3 LINE L1 3935 6584 -1 36 0 0 0 chr6 152762493 152762529 -29652713 + AT_rich Low_complexity Low_complexity 1 36 0 3268 234 44 30 chr6 152762531 152762712 -29652530 + L1M4 LINE L1 4018 4195 -1951 1405 188 48 55 chr6 152762712 152763021 -29652221 + AluJo SINE Alu 1 307 -5 3268 234 44 30 chr6 152763021 152763402 -29651840 + L1M4 LINE L1 4195 4569 -1577 3545 104 12 2 chr6 152763402 152763911 -29651331 - MER75 DNA T2_type 0 514 1 3268 234 44 30 chr6 152763911 152764433 -29650809 + L1M4 LINE L1 4569 5119 -1027 492 242 71 45 chr6 152764430 152764699 -29650543 + HAL1 LINE L1 2083 2358 -149 * 882 281 4 22 chr6 152764705 152764983 -29650259 + L1PB1 LINE L1 4 276 -5865 970 68 8 0 chr6 152764986 152765119 -29650123 - L1PBa LINE L1 -4305 2558 2425 10197 163 18 6 chr6 152765131 152768272 -29646970 + L1PB1 LINE L1 3036 6212 -3 574 196 53 48 chr6 152768297 152768486 -29646756 + L1MA9 LINE L1 3186 3375 -2771 * 3807 175 53 16 chr6 152768472 152769464 -29645778 + L1MA9 LINE L1 5095 6135 -177 2392 80 7 0 chr6 152769464 152769763 -29645479 - AluSp SINE Alu -12 301 1 538 208 96 11 chr6 152769955 152770133 -29645109 + L1MA10 LINE L1 6141 6333 -1 1908 107 39 4 chr6 152770140 152770421 -29644821 + AluSx SINE Alu 1 291 -21 264 184 15 147 chr6 152770439 152770575 -29644667 + HAL1 LINE L1 2348 2465 -42 334 289 124 16 chr6 152770688 152770809 -29644433 + L2 LINE L2 3134 3267 -5 186 315 68 56 chr6 152770968 152771130 -29644112 - L2 LINE L2 -1551 1763 1600 262 353 20 0 chr6 152771835 152771958 -29643284 - MIR SINE MIR -65 143 45 867 202 23 6 chr6 152772003 152772176 -29643066 - MER45A DNA AcHobo 0 178 3 217 333 0 0 chr6 152772565 152772634 -29642608 + L2 LINE L2 3245 3313 0 284 125 0 62 chr6 152773174 152773238 -29642004 + L1ME4a LINE L1 6061 6120 -1 339 232 54 58 chr6 152773351 152773488 -29641754 + MIR SINE MIR 41 176 -65 1062 327 34 13 chr6 152773976 152774502 -29640740 + L2 LINE L2 1996 2532 -782 413 233 17 8 chr6 152774525 152774645 -29640597 + MER112 DNA MER1_type 69 189 -71 477 227 0 53 chr6 152774647 152774779 -29640463 + MER63 DNA MER1_type 1 751 -311 693 354 35 65 chr6 152775255 152776057 -29639185 - L2 LINE L2 -1 3271 2494 872 325 78 15 chr6 152776540 152777001 -29638241 - L2 LINE L2 -810 2504 2015 200 356 34 0 chr6 152777365 152777424 -29637818 + L2 LINE L2 3137 3197 -75 268 252 244 0 chr6 152778100 152778215 -29637027 + MIR SINE MIR 59 201 -61 1594 137 76 52 chr6 152778455 152778783 -29636459 + MER58B DNA MER1_type 6 341 0 202 230 95 0 chr6 152778824 152778898 -29636344 + MIR SINE MIR 168 248 -14 * 205 200 0 0 chr6 152778867 152778907 -29636335 + L2 LINE L2 3263 3302 -11 1264 242 103 27 chr6 152778929 152779529 -29635713 - L2 LINE L2 -2 3311 2661 225 174 5 209 chr6 152779907 152779998 -29635244 - MER106B DNA MER1_type -3 1056 1027 2142 158 7 24 chr6 152779998 152780423 -29634819 - L1MB4 LINE L1 0 6180 5763 225 174 5 209 chr6 152780423 152780532 -29634710 - MER106B DNA MER1_type -32 1027 897 2143 111 0 0 chr6 152780669 152780990 -29634252 - AluSx SINE Alu 0 325 5 1059 196 130 7 chr6 152781642 152781927 -29633315 + L1MD3 LINE L1 7665 7984 -11 207 197 197 15 chr6 152783140 152783206 -29632036 - L2 LINE L2 -13 3259 3182 370 283 58 102 chr6 152783966 152784074 -29631168 + MER102b DNA MER1_type 2 113 -1315 2401 94 0 0 chr6 152784074 152784373 -29630869 + AluSc SINE Alu 1 299 -10 370 283 58 102 chr6 152784373 152784495 -29630747 + MER102b DNA MER1_type 113 215 -1213 1906 150 37 0 chr6 152784495 152784795 -29630447 + AluSx SINE Alu 1 311 -1 370 283 58 102 chr6 152784795 152784906 -29630336 + MER102b DNA MER1_type 215 329 -12 320 306 90 0 chr6 152785117 152785251 -29629991 - MIR3 SINE MIR -1 207 62 706 148 93 82 chr6 152785276 152785458 -29629784 - MLT1B LTR MaLR -206 184 1 1658 184 52 42 chr6 152785459 152785936 -29629306 - MLT1B-int LTR MaLR -1 1723 954 1553 193 0 0 chr6 152785979 152786259 -29628983 - MLT1B-int LTR MaLR -471 900 621 397 250 102 16 chr6 152787488 152787616 -29627626 - L2 LINE L2 -5 3308 3170 2373 70 3 10 chr6 152789282 152789584 -29625658 - AluY SINE Alu -11 300 1 23 68 0 0 chr6 152789628 152789672 -29625570 + AT_rich Low_complexity Low_complexity 1 44 0 32 103 0 0 chr6 152789748 152789864 -29625378 + AT_rich Low_complexity Low_complexity 1 116 0 474 269 113 9 chr6 152789927 152790139 -29625103 + ERVL LTR ERVL 2147 2380 -3384 1946 152 5 61 chr6 152790200 152790596 -29624646 + MLT1B LTR MaLR 16 389 -1 320 317 49 0 chr6 152790602 152790725 -29624517 + ERVL LTR ERVL 2381 2509 -3145 2138 105 10 0 chr6 152790750 152791045 -29624197 - AluSp SINE Alu -15 298 1 29 0 0 0 chr6 152792412 152792441 -29622801 + AT_rich Low_complexity Low_complexity 1 29 0 219 114 0 0 chr6 152792504 152792539 -29622703 + (TG)n Simple_repeat Simple_repeat 2 36 0 6033 85 11 3 chr6 152792547 152794046 -29621196 - L1PA13 LINE L1 -6 6157 4681 791 293 57 31 chr6 152794046 152794432 -29620810 + ERVL LTR ERVL 2668 3063 -2701 1904 86 0 4 chr6 152794517 152794761 -29620481 - AluSg SINE Alu -12 298 56 1166 247 133 71 chr6 152794761 152795312 -29619930 - MLT1G1 LTR MaLR -10 585 1 613 346 57 35 chr6 152795477 152795988 -29619254 + L1MC4a LINE L1 4458 4979 -1167 1343 251 72 51 chr6 152796010 152796692 -29618550 + L1MC4a LINE L1 5254 5949 -1859 618 291 172 49 chr6 152796927 152797967 -29617275 + L1M4 LINE L1 2893 4096 -2050 6168 153 38 22 chr6 152798064 152798555 -29616687 - L1MA5 LINE L1 -4 7358 6876 321 89 0 0 chr6 152798555 152798600 -29616642 + (TG)n Simple_repeat Simple_repeat 2 46 0 6168 153 38 22 chr6 152798600 152800402 -29614840 - L1MA5 LINE L1 -486 6876 5020 4065 60 0 2 chr6 152800403 152800921 -29614321 - L1PA8 LINE L1 -8 6164 5648 392 131 12 0 chr6 152800921 152801005 -29614237 - L1MA5 LINE L1 -5254 1955 1871 2693 46 9 0 chr6 152801007 152801357 -29613885 - L1P3 LINE L1 -485 5669 5317 5821 189 34 16 chr6 152801367 152803351 -29611891 - L1 LINE L1 -3342 3866 1846 444 263 8 0 chr6 152803341 152803474 -29611768 - L1 LINE L1 -6990 219 86 * 324 48 0 0 chr6 152804181 152804223 -29611019 + (TC)n Simple_repeat Simple_repeat 2 43 0 1591 182 132 3 chr6 152804312 152804669 -29610573 + MLT1D LTR MaLR 100 502 -3 384 103 0 0 chr6 152806684 152806742 -29608500 + (CA)n Simple_repeat Simple_repeat 1 58 0 3711 253 70 53 chr6 152806749 152810374 -29604868 + L1MEc LINE L1 92 3731 -2484 819 238 45 18 chr6 152812328 152812614 -29602628 + L1MEc LINE L1 3725 4018 -2197 1252 203 156 30 chr6 152813042 152813199 -29602043 - MER69B DNA AcHobo -1300 1226 1090 2202 109 0 3 chr6 152813199 152813492 -29601750 + AluSx SINE Alu 1 292 -20 1252 203 156 30 chr6 152813492 152813867 -29601375 - MER69B DNA AcHobo -1436 1090 627 189 0 0 0 chr6 152814779 152814800 -29600442 + (TG)n Simple_repeat Simple_repeat 2 22 0 217 155 0 121 chr6 152814947 152815005 -29600237 + polypyrimidine Low_complexity Low_complexity 2 52 0 646 263 38 21 chr6 152815667 152815853 -29599389 + MIR SINE MIR 6 194 -68 32 26 0 0 chr6 152816262 152816301 -29598941 + AT_rich Low_complexity Low_complexity 1 39 0 33 66 0 0 chr6 152816721 152816782 -29598460 + AT_rich Low_complexity Low_complexity 1 61 0 1630 255 32 24 chr6 152816794 152817391 -29597851 - HAL1 LINE L1 -1323 1184 583 2048 155 18 0 chr6 152817760 152818102 -29597140 + MER7A DNA MER2_type 1 346 0 31 44 0 0 chr6 152818153 152818198 -29597044 + AT_rich Low_complexity Low_complexity 1 45 0 247 248 29 29 chr6 152818283 152818388 -29596854 + L1M4 LINE L1 2661 2765 -3381 1468 185 7 33 chr6 152818446 152818749 -29596493 + AluJo SINE Alu 1 295 -17 207 328 133 42 chr6 152818832 152819073 -29596169 - L2 LINE L2 -385 2929 2667 838 203 0 0 chr6 152819156 152819319 -29595923 + MER3 DNA MER1_type 1 163 -46 399 263 68 0 chr6 152819386 152819519 -29595723 - L1MA10 LINE L1 -7 6327 6186 1635 190 0 14 chr6 152820145 152820440 -29594802 - AluJo SINE Alu -21 291 1 2105 124 7 10 chr6 152820454 152820760 -29594482 - AluSx SINE Alu -7 305 1 803 55 0 9 chr6 152821148 152821258 -29593984 + (TCCA)n Simple_repeat Simple_repeat 4 112 0 653 264 71 61 chr6 152821280 152821590 -29593652 - L2 LINE L2 -35 3278 2966 428 336 0 21 chr6 152821654 152821794 -29593448 - L2 LINE L2 -474 2840 2704 847 227 0 0 chr6 152821795 152821971 -29593271 - AluJo SINE Alu -15 297 122 618 188 0 102 chr6 152822028 152822214 -29593028 + MLT1D LTR MaLR 31 197 -308 195 274 118 89 chr6 152823074 152823209 -29592033 - L3b LINE CR1 -13 1570 1432 979 260 23 38 chr6 152823974 152824366 -29590876 - HAL1 LINE L1 -397 2110 1725 1500 226 3 3 chr6 152824391 152824700 -29590542 + AluJo SINE Alu 1 309 -3 669 110 0 0 chr6 152824707 152824807 -29590435 + (GGGA)n Simple_repeat Simple_repeat 4 103 0 943 266 56 58 chr6 152824808 152825270 -29589972 - HAL1 LINE L1 -804 1703 1243 285 75 0 0 chr6 152825272 152825312 -29589930 + (TC)n Simple_repeat Simple_repeat 2 41 0 2535 126 3 3 chr6 152825369 152825733 -29589509 + THE1B LTR MaLR 1 364 0 3860 128 21 3 chr6 152825897 152826563 -29588679 + L1PB4 LINE L1 5358 6035 -121 420 246 88 0 chr6 152826563 152826677 -29588565 - MER63 DNA MER1_type -86 750 1 2223 121 44 14 chr6 152826883 152827247 -29587995 + THE1C LTR MaLR 1 375 0 411 293 26 9 chr6 152827386 152827502 -29587740 + MIR SINE MIR 54 171 -91 25 31 0 0 chr6 152827613 152827645 -29587597 + AT_rich Low_complexity Low_complexity 1 32 0 199 211 14 28 chr6 152828255 152828326 -29586916 + GA-rich Low_complexity Low_complexity 2 71 0 216 389 71 0 chr6 152828502 152828615 -29586627 + L2 LINE L2 3132 3252 -20 21 57 0 0 chr6 152828897 152828932 -29586310 + AT_rich Low_complexity Low_complexity 1 35 0 284 339 8 58 chr6 152829987 152830108 -29585134 - L2 LINE L2 -4 3268 3154 447 270 102 95 chr6 152830513 152830946 -29584296 - L2 LINE L2 0 3313 2878 351 0 0 0 chr6 152831007 152831046 -29584196 + (TG)n Simple_repeat Simple_repeat 2 40 0 186 337 108 0 chr6 152831168 152831251 -29583991 - L3 LINE CR1 -22 1555 1464 1883 166 22 14 chr6 152831567 152831929 -29583313 - MLT1A1 LTR MaLR 0 365 1 428 324 112 0 chr6 152831940 152832119 -29583123 - MIR SINE MIR -15 247 49 24 0 0 0 chr6 152832416 152832440 -29582802 + AT_rich Low_complexity Low_complexity 1 24 0 375 98 0 0 chr6 152832726 152832787 -29582455 + (TC)n Simple_repeat Simple_repeat 1 61 0 207 277 0 0 chr6 152833135 152833182 -29582060 - MIR SINE MIR -129 79 33 207 0 0 0 chr6 152833234 152833257 -29581985 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr6 152833647 152833670 -29581572 + AT_rich Low_complexity Low_complexity 1 23 0 186 267 105 19 chr6 152834180 152834285 -29580957 - L2 LINE L2 -337 2977 2864 21 0 0 0 chr6 152834995 152835016 -29580226 + AT_rich Low_complexity Low_complexity 1 21 0 2680 146 17 42 chr6 152835612 152836092 -29579150 - L1PA15 LINE L1 -1 6164 5697 309 318 127 0 chr6 152836660 152836770 -29578472 + L2 LINE L2 3144 3267 -5 21 36 0 0 chr6 152836921 152836949 -29578293 + AT_rich Low_complexity Low_complexity 1 28 0 2309 89 0 16 chr6 152837012 152837315 -29577927 - AluSc SINE Alu -11 298 1 2798 118 41 12 chr6 152837328 152837744 -29577498 + MSTA LTR MaLR 1 428 0 199 255 20 0 chr6 152838349 152838400 -29576842 - L2 LINE L2 -938 2376 2325 1674 199 46 40 chr6 152838907 152839279 -29575963 + MLT1A2 LTR MaLR 1 374 0 2082 150 109 54 chr6 152840409 152840593 -29574649 - MLT1C LTR MaLR -2 465 292 2311 171 79 0 chr6 152840593 152840986 -29574256 + MSTA LTR MaLR 1 424 -4 2082 150 109 54 chr6 152840986 152841056 -29574186 - MLT1C LTR MaLR -175 292 227 213 39 0 0 chr6 152841056 152841082 -29574160 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2122 112 0 0 chr6 152841085 152841363 -29573879 - AluSc SINE Alu -31 278 1 2082 150 109 54 chr6 152841363 152841544 -29573698 - MLT1C LTR MaLR -241 226 1 466 313 76 55 chr6 152841545 152842224 -29573018 - L2 LINE L2 -19 3253 2560 363 276 198 47 chr6 152842363 152842555 -29572687 - MIR SINE MIR -22 240 20 1709 165 3 34 chr6 152842557 152842879 -29572363 - AluJo SINE Alu 0 312 1 281 258 15 0 chr6 152842936 152843002 -29572240 + L2 LINE L2 3244 3310 -3 451 269 51 51 chr6 152844684 152844859 -29570383 - MIR SINE MIR -65 197 23 267 213 16 0 chr6 152846816 152846877 -29568365 + L3 LINE CR1 1504 1565 -12 2069 134 10 0 chr6 152847102 152847400 -29567842 + AluSx SINE Alu 1 301 -11 819 328 51 18 chr6 152847922 152848393 -29566849 - L2 LINE L2 -81 3232 2748 185 355 105 26 chr6 152849547 152849699 -29565543 - MIR3 SINE MIR -15 193 30 2421 133 5 46 chr6 152850955 152851367 -29563875 - MER4E LTR ERV1 -22 757 363 204 125 0 0 chr6 152851367 152851399 -29563843 + (TC)n Simple_repeat Simple_repeat 1 32 0 2113 136 0 13 chr6 152851399 152851715 -29563527 - AluSq SINE Alu -1 312 1 1510 86 0 86 chr6 152851715 152851959 -29563283 - MER4B LTR ERV1 -387 223 1 260 273 0 34 chr6 152853370 152853458 -29561784 + MER91A DNA MER1_type 1 85 -111 203 271 100 0 chr6 152853530 152853600 -29561642 + MER91A DNA MER1_type 120 196 0 261 139 0 0 chr6 152853950 152853993 -29561249 + (A)n Simple_repeat Simple_repeat 1 43 0 344 291 78 35 chr6 152854034 152854300 -29560942 - L1ME LINE L1 -480 5641 5360 187 225 0 0 chr6 152854712 152854752 -29560490 - MIR SINE MIR -3 259 220 232 241 116 45 chr6 152854828 152854940 -29560302 + MIR SINE MIR 132 251 -11 322 332 50 25 chr6 152856330 152856532 -29558710 + L1MC4a LINE L1 4630 4836 -1310 2948 233 73 72 chr6 152856600 152857868 -29557374 + L1MC4a LINE L1 4929 5398 -748 346 223 126 10 chr6 152857881 152857984 -29557258 - LTR41 LTR ERVL -10 763 649 2321 67 13 13 chr6 152858501 152858800 -29556442 + AluY SINE Alu 1 299 -12 538 268 7 21 chr6 152858821 152858963 -29556279 + MIR SINE MIR 27 166 -96 2381 135 19 16 chr6 152859072 152859443 -29555799 + THE1C LTR MaLR 1 372 -3 1776 119 56 69 chr6 152860415 152860718 -29554524 - AluSx SINE Alu -13 299 1 296 255 19 57 chr6 152862172 152862278 -29552964 - L2 LINE L2 -2 3270 3169 285 289 66 50 chr6 152862702 152862823 -29552419 - L2 LINE L2 -12 3260 3138 967 156 6 58 chr6 152863735 152863908 -29551334 + FAM SINE Alu 1 164 -11 505 279 23 8 chr6 152864231 152864360 -29550882 + MIR SINE MIR 18 148 -114 247 333 22 0 chr6 152864364 152864454 -29550788 + MLT1H LTR MaLR 9 100 -449 254 274 26 77 chr6 152864568 152864685 -29550557 + MLT1H LTR MaLR 231 341 -208 192 288 82 0 chr6 152864831 152864904 -29550338 + MIR SINE MIR 146 224 -38 23 0 0 0 chr6 152865176 152865199 -29550043 + AT_rich Low_complexity Low_complexity 1 23 0 2015 146 0 7 chr6 152865296 152865591 -29549651 + AluSx SINE Alu 1 293 -19 657 306 119 4 chr6 152865689 152865924 -29549318 + MIR SINE MIR 1 262 0 2261 110 0 0 chr6 152867974 152868274 -29546968 + AluY SINE Alu 1 300 -11 23 0 0 0 chr6 152870124 152870147 -29545095 + AT_rich Low_complexity Low_complexity 1 23 0 2340 62 7 7 chr6 152870147 152870435 -29544807 + AluY SINE Alu 1 288 -23 1611 151 39 7 chr6 152870439 152870723 -29544519 - AluJo SINE Alu -19 293 1 336 258 0 0 chr6 152870942 152871008 -29544234 + MIR SINE MIR 1 66 -196 536 227 89 28 chr6 152871024 152871185 -29544057 + MLT1I LTR MaLR 9 211 -243 550 232 174 7 chr6 152871190 152871345 -29543897 + MER5A DNA MER1_type 9 189 0 287 228 88 53 chr6 152871435 152871549 -29543693 + MLT1I LTR MaLR 289 406 -3 401 205 24 0 chr6 152871554 152871637 -29543605 + MIR SINE MIR 71 155 -107 1746 211 15 3 chr6 152871954 152872291 -29542951 - MER58B DNA MER1_type 0 341 1 2202 185 40 49 chr6 152872320 152872790 -29542452 - MER31B LTR ERV1 0 466 1 1064 229 88 107 chr6 152873714 152874064 -29541178 + L1MC4 LINE L1 7282 7620 -422 1675 136 73 24 chr6 152874064 152874351 -29540891 + AluJo SINE Alu 6 306 -6 1064 229 88 107 chr6 152874351 152874523 -29540719 + L1MC4 LINE L1 7620 7794 -248 440 18 18 0 chr6 152874548 152874605 -29540637 + (TG)n Simple_repeat Simple_repeat 2 59 0 351 0 0 0 chr6 152875923 152875962 -29539280 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 57 0 0 chr6 152876335 152876370 -29538872 + AT_rich Low_complexity Low_complexity 1 35 0 281 315 62 56 chr6 152876431 152876593 -29538649 + L2 LINE L2 3075 3237 -76 620 234 132 0 chr6 152877766 152877933 -29537309 + MIR SINE MIR 74 262 0 714 245 128 0 chr6 152877984 152878172 -29537070 + MER58C DNA MER1_type 4 215 0 398 247 94 47 chr6 152879103 152879273 -29535969 - MER5B DNA MER1_type 0 178 1 2375 61 7 14 chr6 152879397 152879691 -29535551 - AluY SINE Alu -19 292 1 338 297 34 17 chr6 152883396 152883514 -29531728 + MIR SINE MIR 49 168 -94 205 235 39 0 chr6 152883938 152883989 -29531253 + MER5B DNA MER1_type 2 54 -124 33 0 0 0 chr6 152885673 152885706 -29529536 + AT_rich Low_complexity Low_complexity 1 33 0 2002 228 36 60 chr6 152888053 152888685 -29526557 + L1ME2 LINE L1 5548 6164 0 189 300 71 29 chr6 152889032 152889102 -29526140 + L3 LINE CR1 9 81 -1496 1141 191 214 27 chr6 152889711 152890047 -29525195 + MLT1D LTR MaLR 107 505 0 4292 173 124 24 chr6 152890054 152890184 -29525058 + L1MD2 LINE L1 5188 5304 -1055 1670 182 150 0 chr6 152890184 152890557 -29524685 - MSTB1 LTR MaLR 0 432 4 4292 173 124 24 chr6 152890557 152891296 -29523946 + L1MD2 LINE L1 5304 6185 -174 330 87 0 0 chr6 152891296 152891342 -29523900 + (CA)n Simple_repeat Simple_repeat 1 46 0 4292 173 124 24 chr6 152891342 152891518 -29523724 + L1MD2 LINE L1 6185 6342 -17 213 325 65 16 chr6 152891533 152891711 -29523531 - L2 LINE L2 -1207 2107 1851 653 236 88 32 chr6 152891839 152892055 -29523187 - MIR SINE MIR -1 261 34 251 196 0 0 chr6 152892058 152892104 -29523138 - L2 LINE L2 0 3313 3268 604 143 0 0 chr6 152892282 152892373 -29522869 + FRAM SINE Alu 72 162 -14 2306 111 3 9 chr6 152892375 152892690 -29522552 + AluSq SINE Alu 1 313 0 255 296 0 71 chr6 152894558 152894656 -29520586 + L2 LINE L2 3173 3263 -9 700 283 70 38 chr6 152894831 152895301 -29519941 - L1ME4a LINE L1 -1 6120 5636 526 282 34 29 chr6 152895543 152895749 -29519493 + MIR SINE MIR 40 246 -16 1074 192 10 5 chr6 152895922 152896120 -29519122 + MER3 DNA MER1_type 5 203 -6 234 293 64 7 chr6 152896326 152896466 -29518776 + HAL1b LINE L1 1193 1340 -8 260 259 12 24 chr6 152896516 152896601 -29518641 - L1ME4a LINE L1 -482 5639 5556 5021 46 0 13 chr6 152896604 152897240 -29518002 + L1PA5 LINE L1 5524 6151 -3 254 242 121 24 chr6 152897431 152897555 -29517687 - L1M2 LINE L1 -823 5468 5333 725 159 0 62 chr6 152897557 152897702 -29517540 + FLAM_C SINE Alu 6 141 -2 1688 181 0 17 chr6 152897879 152898178 -29517064 - AluJb SINE Alu -18 294 1 505 167 12 0 chr6 152898391 152898475 -29516767 - Tigger3(Golem) DNA MER2_type -2907 122 38 266 31 0 0 chr6 152898468 152898500 -29516742 + Tigger3(Golem) DNA MER2_type 55 86 -2943 * 523 89 114 0 chr6 152898635 152898714 -29516528 + 5S rRNA rRNA 1 88 -33 520 326 109 9 chr6 152901708 152901929 -29513313 - MIR SINE MIR 0 262 20 514 188 0 0 chr6 152902318 152902414 -29512828 - AluJ/FRAM SINE Alu -2 310 215 1295 157 5 10 chr6 152902499 152902703 -29512539 - AluJo SINE Alu -108 204 2 1588 150 137 0 chr6 152902741 152903200 -29512042 - Charlie1b DNA MER1_type -7 516 1 186 43 0 0 chr6 152903327 152903350 -29511892 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 249 271 136 34 chr6 152903352 152903470 -29511772 - L2 LINE L2 -6 3266 3137 246 364 10 10 chr6 152903685 152903784 -29511458 - L2 LINE L2 -450 2864 2766 283 313 96 0 chr6 152903820 152903903 -29511339 - MER5A DNA MER1_type -28 161 71 255 264 58 11 chr6 152903901 152903988 -29511254 - L2 LINE L2 0 3313 3223 * 2216 46 0 76 chr6 152903998 152904341 -29510901 - AluY SINE Alu 0 320 1 300 297 86 74 chr6 152904440 152904709 -29510533 - L2 LINE L2 -555 2759 2488 463 317 67 18 chr6 152904931 152905095 -29510147 - MIR3 SINE MIR -12 196 25 1309 203 32 51 chr6 152905292 152905608 -29509634 - MLT1B LTR MaLR -29 361 52 463 319 42 0 chr6 152907471 152907637 -29507605 - L1ME4a LINE L1 -220 5901 5729 693 257 251 28 chr6 152908213 152908645 -29506597 - L2 LINE L2 -1 3312 2782 195 288 135 27 chr6 152908969 152909080 -29506162 - MIR3 SINE MIR -1 207 85 218 307 158 10 chr6 152909187 152909288 -29505954 + MIR SINE MIR 135 250 -12 2365 101 3 0 chr6 152909409 152909717 -29505525 + AluSp SINE Alu 1 309 -4 1395 247 85 30 chr6 152909764 152910201 -29505041 - LTR16B LTR ERVL 0 464 4 1993 143 0 3 chr6 152910491 152910784 -29504458 + AluJb SINE Alu 1 292 -20 330 276 103 0 chr6 152911382 152911498 -29503744 - L1ME4a LINE L1 -34 6087 5960 23 0 0 0 chr6 152911581 152911604 -29503638 + AT_rich Low_complexity Low_complexity 1 23 0 372 272 64 8 chr6 152912596 152912721 -29502521 - MIR SINE MIR -32 230 99 467 198 0 0 chr6 152914241 152914332 -29500910 - AluJ/FRAM SINE Alu 0 312 222 746 157 92 27 chr6 152914720 152914905 -29500337 + MER5C DNA MER1_type 127 323 -1 310 299 51 37 chr6 152914918 152914984 -29500258 + L1MC4a LINE L1 5776 5840 -1968 2798 156 84 12 chr6 152914984 152915497 -29499745 + MER44D DNA MER2_type 1 605 0 310 299 51 37 chr6 152915497 152915644 -29499598 + L1MC4a LINE L1 5840 5992 -1816 327 310 145 28 chr6 152915670 152915925 -29499317 + L1MC4a LINE L1 6054 6338 -1470 940 240 34 92 chr6 152916141 152916197 -29499045 + L1MC5 LINE L1 6565 6623 -1185 189 0 0 0 chr6 152916197 152916218 -29499024 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 940 240 34 92 chr6 152916218 152916697 -29498545 + L1MC5 LINE L1 6623 6954 -854 21 36 0 0 chr6 152916846 152916874 -29498368 + AT_rich Low_complexity Low_complexity 1 28 0 429 242 10 0 chr6 152917077 152917176 -29498066 + MIR SINE MIR 156 255 -7 207 0 0 0 chr6 152917469 152917492 -29497750 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7141 44 0 0 chr6 152917496 152918711 -29496531 - L1PA5 LINE L1 -8 6146 4946 2164 108 0 0 chr6 152918795 152919074 -29496168 - AluSc SINE Alu -30 279 1 22 56 0 0 chr6 152920296 152920332 -29494910 + AT_rich Low_complexity Low_complexity 1 36 0 329 269 164 18 chr6 152922255 152922426 -29492816 + HAL1 LINE L1 1217 1412 -1095 1218 167 35 51 chr6 152922448 152922705 -29492537 + AluJo SINE Alu 40 292 -20 1450 175 4 19 chr6 152922707 152922964 -29492278 + AluJo SINE Alu 37 289 -23 23 33 0 0 chr6 152922964 152922994 -29492248 + AT_rich Low_complexity Low_complexity 1 30 0 2307 78 0 36 chr6 152922994 152923302 -29491940 + AluSg SINE Alu 1 297 -13 28 0 0 0 chr6 152923773 152923801 -29491441 + AT_rich Low_complexity Low_complexity 1 28 0 497 315 140 25 chr6 152923955 152924198 -29491044 + L2 LINE L2 1848 2148 -1166 1793 173 3 10 chr6 152924198 152924504 -29490738 + AluJb SINE Alu 3 306 -6 497 315 140 25 chr6 152924504 152924625 -29490617 + L2 LINE L2 2148 2254 -1060 2817 265 147 44 chr6 152924710 152926459 -29488783 - L2 LINE L2 0 3313 1380 554 183 35 9 chr6 152926508 152926623 -29488619 - MIR SINE MIR 0 262 145 2347 200 70 4 chr6 152926707 152927253 -29487989 + L1MB8 LINE L1 5595 6176 -2 246 380 33 8 chr6 152927413 152927534 -29487708 + MIR3 SINE MIR 15 138 -70 21 0 0 0 chr6 152928786 152928807 -29486435 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr6 152928988 152929047 -29486195 + AT_rich Low_complexity Low_complexity 1 59 0 1600 170 4 8 chr6 152929567 152929832 -29485410 + AluJb SINE Alu 13 276 -36 240 156 67 0 chr6 152929975 152930065 -29485177 + (TA)n Simple_repeat Simple_repeat 1 96 0 480 217 148 0 chr6 152930181 152930296 -29484946 - MIR SINE MIR -70 192 61 355 316 107 10 chr6 152930356 152930552 -29484690 + L1ME4a LINE L1 3787 4001 -2145 690 188 4 15 chr6 152930562 152930815 -29484427 + AluJo SINE Alu 1 301 -11 249 331 32 0 chr6 152930839 152930963 -29484279 + L1ME4a LINE L1 4033 4160 -1986 320 359 223 16 chr6 152932026 152932567 -29482675 - L2 LINE L2 -16 3297 2631 472 325 5 20 chr6 152932583 152932783 -29482459 - L2 LINE L2 0 3313 3117 276 204 0 19 chr6 152933090 152933144 -29482098 - L2 LINE L2 -678 2636 2584 301 275 46 9 chr6 152933371 152933480 -29481762 + L1ME4a LINE L1 5386 5498 -668 322 267 67 72 chr6 152933532 152933727 -29481515 + L1ME4a LINE L1 5695 5888 -233 275 269 103 21 chr6 152933773 152933918 -29481324 + L1ME4a LINE L1 5956 6112 -9 986 188 61 14 chr6 152935624 152935837 -29479405 - MER58A DNA MER1_type 0 224 2 566 219 53 0 chr6 152936128 152936242 -29479000 + MER58A DNA MER1_type 15 134 0 1703 202 149 10 chr6 152937077 152937492 -29477750 - Charlie4a DNA MER1_type 0 508 36 26 64 0 0 chr6 152938330 152938377 -29476865 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr6 152941001 152941030 -29474212 + AT_rich Low_complexity Low_complexity 1 29 0 1240 171 33 19 chr6 152941039 152941250 -29473992 + AluJb SINE Alu 85 298 -14 1045 106 0 0 chr6 152941551 152941693 -29473549 + AluSg/x SINE Alu 168 309 -3 252 57 0 29 chr6 152941919 152941954 -29473288 + tRNA-Gly-GGA tRNA tRNA 3 36 -39 427 127 16 0 chr6 152941991 152942054 -29473188 - FLAM_A SINE Alu -59 83 20 25 0 0 0 chr6 152942201 152942226 -29473016 + AT_rich Low_complexity Low_complexity 1 25 0 734 212 163 46 chr6 152942362 152942711 -29472531 - MLT1B LTR MaLR 0 390 1 1525 148 95 49 chr6 152942785 152943054 -29472188 - MLT1B LTR MaLR -50 340 52 6733 122 82 3 chr6 152943054 152944194 -29471048 + Tigger3b DNA MER2_type 2 1230 -1 1525 148 95 49 chr6 152944194 152944249 -29470993 - MLT1B LTR MaLR -338 52 1 28 29 0 0 chr6 152945422 152945457 -29469785 + AT_rich Low_complexity Low_complexity 1 35 0 243 61 0 0 chr6 152945792 152945825 -29469417 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1494 165 28 12 chr6 152945833 152946087 -29469155 - AluJo SINE Alu -54 258 1 638 287 81 39 chr6 152946658 152946965 -29468277 - L2 LINE L2 0 3313 2994 3048 264 102 31 chr6 152947028 152948104 -29467138 - L2 LINE L2 0 3313 2101 1978 73 0 12 chr6 152948104 152948351 -29466891 + AluSq SINE Alu 8 251 -62 3048 264 102 31 chr6 152948351 152948775 -29466467 - L2 LINE L2 -1212 2101 1708 207 114 0 0 chr6 152948861 152948896 -29466346 + (TG)n Simple_repeat Simple_repeat 2 36 0 710 329 101 11 chr6 152948907 152949275 -29465967 - L2 LINE L2 -2139 1175 775 618 198 40 62 chr6 152949275 152949452 -29465790 - L2 LINE L2 -856 2458 2286 381 266 156 12 chr6 152949516 152949689 -29465553 - L2 LINE L2 -2549 765 568 371 294 33 46 chr6 152951502 152951655 -29463587 + MIR SINE MIR 4 154 -108 1932 146 3 10 chr6 152954134 152954443 -29460799 - AluJo SINE Alu -5 307 1 1506 177 47 40 chr6 152955019 152955318 -29459924 - AluJb SINE Alu -9 303 3 1855 182 3 0 chr6 152956499 152956795 -29458447 - AluJo SINE Alu -15 297 1 439 220 220 8 chr6 152957388 152957677 -29457565 + MLT1L LTR MaLR 203 578 -37 28 29 0 0 chr6 152957691 152957726 -29457516 + AT_rich Low_complexity Low_complexity 1 35 0 811 171 0 0 chr6 152957732 152957861 -29457381 - FRAM SINE Alu -28 148 20 657 238 145 4 chr6 152958717 152958944 -29456298 + MER34 LTR ERV1 27 285 -257 331 209 30 0 chr6 152958954 152959021 -29456221 + MER34 LTR ERV1 472 540 -2 252 118 0 0 chr6 152959201 152959235 -29456007 - Alu SINE Alu -258 44 11 1843 100 0 12 chr6 152959235 152959484 -29455758 + AluSx SINE Alu 56 301 -11 219 139 0 0 chr6 152960388 152960424 -29454818 + (CAG)n Simple_repeat Simple_repeat 3 38 0 342 175 15 161 chr6 152961014 152961103 -29454139 - MER5A DNA MER1_type -72 117 53 2423 78 10 0 chr6 152961103 152961411 -29453831 + AluY SINE Alu 1 311 0 342 175 15 161 chr6 152961411 152961458 -29453784 - MER5A DNA MER1_type -136 53 1 2032 112 3 41 chr6 152961596 152961938 -29453304 - AluSx SINE Alu 0 331 1 198 259 179 9 chr6 152962165 152962277 -29452965 + L2 LINE L2 3133 3263 -9 1587 151 85 4 chr6 152962569 152962840 -29452402 - AluSx SINE Alu -17 295 3 511 222 54 30 chr6 152964379 152964546 -29450696 + MIR SINE MIR 38 208 -54 700 200 15 35 chr6 152965631 152965904 -29449338 + GA-rich Low_complexity Low_complexity 1 267 0 283 235 0 0 chr6 152965904 152965955 -29449287 + polypurine Low_complexity Low_complexity 1 51 0 251 110 110 25 chr6 152966611 152966729 -29448513 + (TATG)n Simple_repeat Simple_repeat 3 130 0 986 220 56 41 chr6 152966809 152967077 -29448165 + ORSL DNA AcHobo 4 275 0 319 189 67 128 chr6 152967260 152967424 -29447818 - MIR SINE MIR -18 244 91 1828 152 4 0 chr6 152967583 152967860 -29447382 - AluJb SINE Alu -30 282 5 438 320 24 72 chr6 152967898 152968229 -29447013 - L2 LINE L2 -17 3255 2941 1063 158 5 15 chr6 152969058 152969254 -29445988 + L1PBa LINE L1 1 194 -6669 805 135 0 71 chr6 152969254 152969395 -29445847 + MLT1A1 LTR MaLR 189 319 -46 903 211 18 0 chr6 152969493 152969664 -29445578 - FAM SINE Alu -1 174 1 208 364 93 0 chr6 152969921 152970050 -29445192 - L2 LINE L2 0 3272 3132 601 219 104 72 chr6 152970137 152970388 -29444854 - MIR SINE MIR -3 259 1 205 307 73 22 chr6 152970569 152970706 -29444536 - L2 LINE L2 -556 2758 2615 246 307 178 0 chr6 152970936 152971037 -29444205 + L2 LINE L2 3154 3272 0 225 224 0 17 chr6 152971038 152971096 -29444146 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 438 299 54 22 chr6 152971438 152971513 -29443729 + L2 LINE L2 3079 3150 -163 240 35 0 0 chr6 152971513 152971542 -29443700 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 438 299 54 22 chr6 152971542 152971561 -29443681 + L2 LINE L2 3150 3167 -146 1851 188 55 70 chr6 152971561 152972028 -29443214 - MLT1D LTR MaLR -2 503 43 2459 81 3 0 chr6 152972028 152972325 -29442917 - AluSg SINE Alu -12 298 1 1851 188 55 70 chr6 152972325 152972368 -29442874 - MLT1D LTR MaLR -462 43 1 438 299 54 22 chr6 152972368 152972496 -29442746 + L2 LINE L2 3167 3309 -4 2675 106 5 8 chr6 152972586 152972962 -29442280 + THE1C LTR MaLR 1 375 0 215 305 85 8 chr6 152973621 152973739 -29441503 - MIR SINE MIR -13 249 123 623 213 92 60 chr6 152973979 152974261 -29440981 - MER96B DNA MER1_type? -7 410 120 1592 217 111 4 chr6 152974394 152974905 -29440337 - L1MD3 LINE L1 -1672 6113 5534 4020 88 9 2 chr6 152975109 152975664 -29439578 + L1MA5A LINE L1 5738 6296 -1 1305 197 35 56 chr6 152976516 152976636 -29438606 - L1MA6 LINE L1 0 6300 6179 1728 179 7 10 chr6 152976636 152976932 -29438310 - AluJb SINE Alu -17 295 1 1305 197 35 56 chr6 152976932 152977187 -29438055 - L1MA6 LINE L1 -121 6179 5933 205 167 0 0 chr6 152978326 152978362 -29436880 + T-rich Low_complexity Low_complexity 1 36 0 2801 10 0 3 chr6 152978604 152978908 -29436334 - AluY SINE Alu -8 303 1 253 247 0 71 chr6 152979194 152979279 -29435963 + L2 LINE L2 3021 3099 -173 226 69 0 0 chr6 152979584 152979613 -29435629 + MSTC LTR MaLR 1 29 -399 4070 143 3 0 chr6 152979613 152980243 -29434999 + L1PB3 LINE L1 5522 6153 -1 2672 121 53 2 chr6 152980264 152980661 -29434581 + MSTC LTR MaLR 12 428 0 194 313 28 82 chr6 152980661 152980843 -29434399 - L2 LINE L2 -236 3036 2865 950 210 125 86 chr6 152980854 152981458 -29433784 - MER34C LTR ERV1 -11 584 1 469 326 72 43 chr6 152981798 152982420 -29432822 - L2 LINE L2 -916 2398 1759 200 190 35 35 chr6 152982465 152982523 -29432719 + L2 LINE L2 3210 3267 -5 1500 190 3 28 chr6 152983165 152983485 -29431757 - AluJo SINE Alu 0 313 1 405 0 0 0 chr6 152983626 152983671 -29431571 + (TG)n Simple_repeat Simple_repeat 2 46 0 480 286 8 23 chr6 152984257 152984390 -29430852 + MER34 LTR ERV1 1 131 -411 1835 82 0 102 chr6 152984398 152984691 -29430551 + AluSq SINE Alu 21 283 -30 412 203 104 91 chr6 152984848 152985123 -29430119 + LTR48 LTR ERV1 365 787 0 26 118 0 0 chr6 152985773 152985925 -29429317 + GC_rich Low_complexity Low_complexity 1 152 0 29 90 0 0 chr6 152986047 152986125 -29429117 + GC_rich Low_complexity Low_complexity 1 78 0 1713 115 63 19 chr6 152986651 152986920 -29428322 + AluSx SINE Alu 1 281 -31 228 35 0 0 chr6 152986921 152986950 -29428292 + (CA)n Simple_repeat Simple_repeat 2 30 0 324 200 82 55 chr6 152987071 152987181 -29428061 + MIR SINE MIR 79 191 -71 295 254 333 0 chr6 152988528 152988654 -29426588 + MER5A DNA MER1_type 22 189 0 519 224 143 37 chr6 152988662 152988823 -29426419 - MER5B DNA MER1_type 0 178 1 901 218 18 6 chr6 152989748 152989918 -29425324 - FAM SINE Alu -3 172 1 206 320 62 31 chr6 152990168 152990265 -29424977 - L2 LINE L2 -8 3305 3206 316 282 77 66 chr6 152990919 152991100 -29424142 + MER91A DNA MER1_type 1 183 -13 404 232 12 0 chr6 152991769 152991851 -29423391 - L2 LINE L2 -1 3312 3230 197 301 60 120 chr6 152992223 152992589 -29422653 - L2 LINE L2 -100 3172 2829 1645 189 124 6 chr6 152992743 152993065 -29422177 + MER39 LTR ERV1 1 360 -347 884 116 7 14 chr6 152993100 152993238 -29422004 + MER39 LTR ERV1 571 707 0 284 229 10 73 chr6 152993311 152993407 -29421835 + MIR SINE MIR 107 196 -66 378 367 29 14 chr6 152993495 152993634 -29421608 + L2 LINE L2 3132 3272 0 2104 135 3 3 chr6 152993769 152994073 -29421169 - AluSx SINE Alu -8 304 1 268 340 57 21 chr6 152994390 152994531 -29420711 - MIR3 SINE MIR -60 148 3 1705 174 3 39 chr6 152995574 152995879 -29419363 + AluJo SINE Alu 3 296 -16 295 344 0 0 chr6 152995905 152995998 -29419244 + MARNA DNA Mariner 61 153 -433 430 274 150 0 chr6 152996125 152996278 -29418964 + MARNA DNA Mariner 400 575 -11 420 137 29 0 chr6 152996689 152996791 -29418451 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 1913 195 8 43 chr6 152996829 152997204 -29418038 - MLT1A2 LTR MaLR -12 362 1 200 269 0 0 chr6 152997215 152997267 -29417975 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 410 245 0 11 chr6 152999049 152999143 -29416099 - MER5A DNA MER1_type -88 101 9 2103 142 7 0 chr6 152999585 152999895 -29415347 + AluJb SINE Alu 1 312 0 1165 144 123 30 chr6 152999995 153000231 -29415011 - Tigger7 DNA MER2_type 0 2491 2234 1990 118 73 0 chr6 153001450 153001737 -29413505 + AluSx SINE Alu 1 308 -4 218 189 0 0 chr6 153001960 153001997 -29413245 - L2 LINE L2 -9 3304 3268 2651 174 38 21 chr6 153002043 153002572 -29412670 - MER67A LTR ERV1 0 543 6 455 224 233 45 chr6 153002583 153002806 -29412436 - L2 LINE L2 -128 3185 2921 291 247 0 32 chr6 153002819 153002912 -29412330 - L2 LINE L2 -507 2807 2718 2004 132 134 65 chr6 153003133 153003579 -29411663 - MER31A LTR ERV1 -8 477 1 595 292 70 49 chr6 153005224 153005697 -29409545 - HSATI Satellite Satellite -18 559 77 507 267 70 27 chr6 153006050 153006237 -29409005 - MIR SINE MIR -45 217 23 472 205 180 33 chr6 153006959 153007203 -29408039 + L1MC5 LINE L1 7497 7776 -185 2401 109 0 0 chr6 153008526 153008839 -29406403 - AluSp SINE Alu 0 313 1 253 307 40 87 chr6 153009480 153009711 -29405531 - L2 LINE L2 -191 3081 2864 396 0 0 0 chr6 153009711 153009755 -29405487 + (TG)n Simple_repeat Simple_repeat 2 45 0 253 307 40 87 chr6 153009755 153009800 -29405442 - L2 LINE L2 -408 2864 2818 191 270 180 0 chr6 153010122 153010211 -29405031 + L2 LINE L2 3166 3270 -2 289 342 50 67 chr6 153010759 153011004 -29404238 + L2 LINE L2 2894 3135 -137 2725 126 48 12 chr6 153011004 153011417 -29403825 - MSTA LTR MaLR 0 428 1 289 342 50 67 chr6 153011417 153011469 -29403773 + L2 LINE L2 3135 3186 -86 291 292 11 0 chr6 153011507 153011596 -29403646 + Tigger8 DNA MER2_type 439 528 -138 1776 174 117 0 chr6 153011596 153011964 -29403278 + L1MB4 LINE L1 5764 6174 -6 1942 112 38 3 chr6 153012120 153012407 -29402835 + AluSc SINE Alu 10 306 -3 1947 136 0 27 chr6 153012542 153012843 -29402399 + AluJb SINE Alu 1 293 -19 215 200 0 0 chr6 153012980 153013015 -29402227 + (TG)n Simple_repeat Simple_repeat 2 36 0 254 87 0 0 chr6 153013015 153013061 -29402181 + LTR66 LTR ERVL 394 439 -171 348 197 0 86 chr6 153013069 153013205 -29402037 + Alu SINE Alu 240 302 0 445 272 98 60 chr6 153013944 153014165 -29401077 - L2 LINE L2 0 3313 3102 2461 31 45 0 chr6 153014165 153014452 -29400790 + AluY SINE Alu 1 300 -11 445 272 98 60 chr6 153014452 153014834 -29400408 - L2 LINE L2 -211 3102 2620 1326 164 14 5 chr6 153014872 153015092 -29400150 - AluJo SINE Alu -90 222 1 1825 143 3 32 chr6 153015124 153015432 -29399810 - AluJo SINE Alu -13 299 1 817 243 65 48 chr6 153015437 153015837 -29399405 - L1MC5 LINE L1 -45 7916 7510 2057 126 0 7 chr6 153016190 153016523 -29398719 - AluSx SINE Alu 0 312 5 296 364 77 0 chr6 153016972 153017150 -29398092 + MIR SINE MIR 5 196 -63 596 316 78 30 chr6 153017951 153018312 -29396930 + MLT1J2 LTR MaLR 68 445 -5 287 277 0 0 chr6 153018427 153018492 -29396750 - MER113 DNA MER1_type? -3 518 454 673 268 38 10 chr6 153018513 153018722 -29396520 - MER113 DNA MER1_type? -306 215 1 618 229 19 79 chr6 153019823 153020037 -29395205 - L1MC4a LINE L1 0 7808 7608 841 201 65 5 chr6 153020037 153020236 -29395006 - L1MC4a LINE L1 -672 7136 6926 1140 149 27 50 chr6 153020239 153020460 -29394782 - AluJo SINE Alu -14 298 83 882 243 0 10 chr6 153020461 153020667 -29394575 - L1MC4a LINE L1 -880 6928 6725 186 71 0 0 chr6 153021339 153021367 -29393875 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2061 128 0 3 chr6 153021393 153021681 -29393561 - AluSx SINE Alu -25 287 1 254 253 27 0 chr6 153021826 153021901 -29393341 - L1MD3 LINE L1 -11 7984 7908 247 306 159 18 chr6 153022030 153022200 -29393042 + MLT1K LTR MaLR 76 269 -319 277 213 130 46 chr6 153022291 153022399 -29392843 + MLT1K LTR MaLR 408 524 -64 1798 243 120 10 chr6 153022736 153023235 -29392007 - MLT1E LTR MaLR 0 593 40 2310 116 3 0 chr6 153025423 153025734 -29389508 + AluSx SINE Alu 1 312 0 1292 228 3 0 chr6 153027072 153027383 -29387859 + AluSx SINE Alu 1 312 0 451 319 74 0 chr6 153028906 153029041 -29386201 + MER91A DNA MER1_type 1 145 -51 257 247 11 21 chr6 153029112 153029306 -29385936 + GA-rich Low_complexity Low_complexity 1 191 0 2150 128 0 0 chr6 153029383 153029681 -29385561 - AluJb SINE Alu -14 298 1 1405 247 76 36 chr6 153030213 153030663 -29384579 - MLT1E LTR MaLR 0 593 126 2405 50 0 0 chr6 153030681 153030990 -29384252 + AluY SINE Alu 1 309 0 1310 86 0 6 chr6 153030990 153031186 -29384056 + AluSg/x SINE Alu 122 316 0 316 366 36 5 chr6 153031211 153031405 -29383837 - L2 LINE L2 -2518 796 597 532 270 34 22 chr6 153031426 153031604 -29383638 + L1MEd LINE L1 8 187 -5932 185 156 0 0 chr6 153031750 153031782 -29383460 - L2 LINE L2 -2710 604 573 421 117 0 33 chr6 153031794 153031854 -29383388 + AluJb SINE Alu 3 60 -252 229 97 0 0 chr6 153032049 153032080 -29383162 - MLT1F1 LTR MaLR 0 567 537 1538 120 0 13 chr6 153032082 153032307 -29382935 + AluJb SINE Alu 58 279 -33 865 264 36 45 chr6 153032511 153032844 -29382398 + L1MEd LINE L1 447 776 -5343 358 275 87 39 chr6 153032912 153033119 -29382123 + L1ME LINE L1 5565 5781 -340 21 0 0 0 chr6 153033413 153033434 -29381808 + AT_rich Low_complexity Low_complexity 1 21 0 219 424 8 8 chr6 153034251 153034369 -29380873 + L3 LINE CR1 1048 1165 -412 * 242 363 44 0 chr6 153034355 153034468 -29380774 + L2 LINE L2 3155 3272 0 269 208 281 0 chr6 153036106 153036202 -29379040 + L2 LINE L2 3190 3312 -1 2441 190 43 6 chr6 153036909 153037378 -29377864 - MER66B LTR ERV1 0 486 1 3677 100 8 12 chr6 153037526 153038036 -29377206 - MER75 DNA T2_type 0 514 7 2167 100 7 0 chr6 153038209 153038532 -29376710 + AluSp SINE Alu 1 325 0 638 301 77 11 chr6 153039056 153039435 -29375807 + L1M4 LINE L1 3102 3505 -2641 2027 165 0 49 chr6 153039495 153039657 -29375585 - MLT1B LTR MaLR -1 389 221 2222 113 135 5 chr6 153039657 153040036 -29375206 + MSTA LTR MaLR 1 428 0 2027 165 0 49 chr6 153040036 153040278 -29374964 - MLT1B LTR MaLR -169 221 5 231 325 40 7 chr6 153040341 153040492 -29374750 + L1M4 LINE L1 3661 3816 -2330 462 323 44 53 chr6 153042260 153042486 -29372756 + MER115 DNA AcHobo 123 346 -347 887 182 0 0 chr6 153042602 153042767 -29372475 + MER115 DNA AcHobo 529 693 0 355 115 0 0 chr6 153043130 153043182 -29372060 + Tigger4(Zombi) DNA MER2_type 2578 2629 -102 1805 141 30 26 chr6 153043244 153043549 -29371693 + AluJb SINE Alu 1 306 -6 320 303 63 132 chr6 153043602 153043889 -29371353 - L2 LINE L2 -4 3268 3002 1220 147 79 5 chr6 153044485 153044776 -29370466 + MER46B DNA MER2_type 1 236 0 315 302 103 16 chr6 153044802 153044928 -29370314 + L2 LINE L2 3132 3268 -4 2014 161 3 0 chr6 153047035 153047345 -29367897 + AluJo SINE Alu 1 311 -1 1685 193 107 50 chr6 153048543 153049020 -29366222 + MLT1D LTR MaLR 1 504 -1 297 171 9 144 chr6 153050308 153050419 -29364823 - MER102b DNA MER1_type -13 328 233 219 36 0 0 chr6 153051211 153051239 -29364003 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 696 239 56 20 chr6 153051452 153051649 -29363593 + MIR SINE MIR 47 250 -12 1113 154 31 9 chr6 153052373 153052600 -29362642 - L1MA4 LINE L1 -1 6299 6068 2260 118 0 3 chr6 153053341 153053646 -29361596 + AluSx SINE Alu 1 304 -8 955 139 30 0 chr6 153053712 153053877 -29361365 - MER31A LTR ERV1 -8 477 308 2105 126 10 3 chr6 153054295 153054605 -29360637 + AluSx SINE Alu 1 312 0 2185 109 3 34 chr6 153055078 153055398 -29359844 + AluSx SINE Alu 1 310 -2 751 137 0 0 chr6 153056314 153056445 -29358797 - L1MA7 LINE L1 0 6291 6161 948 257 51 10 chr6 153056475 153056786 -29358456 - MER46C DNA MER2_type -1 337 14 651 316 15 0 chr6 153061947 153062143 -29353099 + MIR SINE MIR 56 254 -8 211 311 27 0 chr6 153063080 153063154 -29352088 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 2256 71 17 0 chr6 153063454 153063750 -29351492 - AluY SINE Alu -10 301 1 2120 127 0 3 chr6 153064415 153064706 -29350536 + AluSg SINE Alu 1 290 -20 247 200 36 0 chr6 153064741 153064796 -29350446 + MER103 DNA DNA 90 146 -20 203 346 60 23 chr6 153065524 153065657 -29349585 - MIR SINE MIR -14 248 111 793 320 73 27 chr6 153067015 153067453 -29347789 - L2 LINE L2 0 3313 2856 185 200 0 123 chr6 153067539 153067604 -29347638 - L2 LINE L2 -640 2674 2618 520 236 34 39 chr6 153067882 153068060 -29347182 + MER5B DNA MER1_type 2 178 0 235 269 19 0 chr6 153068067 153068119 -29347123 + polypyrimidine Low_complexity Low_complexity 2 54 0 261 287 46 0 chr6 153068153 153068240 -29347002 - L2 LINE L2 -1077 2237 2147 303 28 0 0 chr6 153068732 153068768 -29346474 + (CA)n Simple_repeat Simple_repeat 2 37 0 291 302 12 0 chr6 153069617 153069703 -29345539 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 241 224 103 37 chr6 153069720 153069827 -29345415 + MER5B DNA MER1_type 64 177 -1 183 240 116 82 chr6 153072060 153072206 -29343036 + MIR3 SINE MIR 6 156 -52 21 36 0 0 chr6 153073235 153073263 -29341979 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr6 153073641 153073672 -29341570 + AT_rich Low_complexity Low_complexity 1 31 0 1765 129 0 0 chr6 153073809 153074083 -29341159 + AluSx SINE Alu 42 315 0 183 114 0 0 chr6 153074567 153074602 -29340640 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1647 167 4 0 chr6 153074608 153074883 -29340359 - AluSq SINE Alu -37 276 1 2045 127 0 20 chr6 153075440 153075739 -29339503 + AluSx SINE Alu 1 293 -19 32 81 0 0 chr6 153075932 153076006 -29339236 + AT_rich Low_complexity Low_complexity 1 74 0 727 266 53 29 chr6 153076258 153076502 -29338740 - L2 LINE L2 -8 3305 3056 2357 74 0 0 chr6 153076822 153077118 -29338124 + AluY SINE Alu 1 296 -15 361 325 32 0 chr6 153077376 153077530 -29337712 + MARNA DNA Mariner 45 203 -383 293 263 17 34 chr6 153077820 153077938 -29337304 + MARNA DNA Mariner 216 331 -255 2547 156 12 35 chr6 153078069 153078173 -29337069 - L1MB5 LINE L1 -1 6173 6068 2057 88 0 4 chr6 153078173 153078434 -29336808 - AluSg SINE Alu -17 293 34 2547 156 12 35 chr6 153078434 153078841 -29336401 - L1MB5 LINE L1 -106 6068 5674 2271 174 49 21 chr6 153078842 153079308 -29335934 - MLT1D LTR MaLR -3 502 24 495 0 0 0 chr6 153079491 153079546 -29335696 + (TA)n Simple_repeat Simple_repeat 1 55 0 224 269 167 0 chr6 153079553 153079631 -29335611 + L2 LINE L2 3163 3253 -19 30 83 0 0 chr6 153080679 153080751 -29334491 + AT_rich Low_complexity Low_complexity 1 72 0 234 164 148 0 chr6 153081099 153081160 -29334082 + MIR SINE MIR 162 231 -31 1887 158 0 16 chr6 153081743 153082060 -29333182 - AluJo SINE Alu 0 312 1 5437 154 27 61 chr6 153083001 153084427 -29330815 - L1MC1 LINE L1 -6 6327 4924 720 270 169 27 chr6 153085756 153085883 -29329359 - L1MC4a LINE L1 -1927 5881 5773 315 0 0 0 chr6 153085883 153085918 -29329324 + (TG)n Simple_repeat Simple_repeat 2 36 0 720 270 169 27 chr6 153085918 153086339 -29328903 - L1MC4a LINE L1 -2035 5773 5255 2069 128 7 23 chr6 153086492 153086796 -29328446 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr6 153086854 153086876 -29328366 + AT_rich Low_complexity Low_complexity 1 22 0 245 95 0 24 chr6 153087892 153087934 -29327308 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 1527 228 156 29 chr6 153088050 153088576 -29326666 - MLT1E LTR MaLR 0 593 1 2084 120 3 17 chr6 153088825 153089124 -29326118 + AluJo SINE Alu 2 296 -16 321 26 0 0 chr6 153089129 153089167 -29326075 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 279 101 17 chr6 153089859 153090038 -29325204 + MARNA DNA Mariner 48 241 -345 394 366 44 3 chr6 153090148 153090443 -29324799 + L1M4 LINE L1 2518 2824 -3322 2004 176 28 20 chr6 153090525 153090917 -29324325 + Tigger3b DNA MER2_type 2 396 -835 1238 211 141 76 chr6 153091298 153091519 -29323723 + MLT1D LTR MaLR 1 206 -299 871 222 97 57 chr6 153091519 153091870 -29323372 - MLT1A1 LTR MaLR 0 365 1 1238 211 141 76 chr6 153091870 153092045 -29323197 + MLT1D LTR MaLR 206 368 -137 210 91 0 0 chr6 153092045 153092078 -29323164 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 2255 98 3 0 chr6 153092085 153092372 -29322870 - AluSp SINE Alu -25 288 1 1238 211 141 76 chr6 153092372 153092440 -29322802 + MLT1D LTR MaLR 373 505 0 2546 138 56 20 chr6 153093066 153093515 -29321727 + MLT1C LTR MaLR 1 465 -2 23 0 0 0 chr6 153094560 153094583 -29320659 + AT_rich Low_complexity Low_complexity 1 23 0 228 83 0 0 chr6 153094659 153094695 -29320547 + MLT1C LTR MaLR 274 309 -158 2041 70 0 4 chr6 153094795 153095052 -29320190 + AluY SINE Alu 44 299 -12 593 206 6 47 chr6 153095150 153095320 -29319922 + MER104 DNA Tc2 2 164 -16 1580 121 13 0 chr6 153095398 153095637 -29319605 - L1PB1 LINE L1 -3 6148 5907 2172 95 39 3 chr6 153095637 153095850 -29319392 + L1PB1 LINE L1 5566 5797 -354 207 114 0 0 chr6 153095850 153095885 -29319357 + (TA)n Simple_repeat Simple_repeat 1 35 0 2172 95 39 3 chr6 153095885 153096009 -29319233 + L1PB1 LINE L1 5797 5915 -236 324 323 67 45 chr6 153096280 153096549 -29318693 + L1M4 LINE L1 4882 5156 -990 440 299 61 7 chr6 153097786 153097933 -29317309 - MIR SINE MIR -93 169 15 703 315 63 25 chr6 153097974 153098520 -29316722 - L2 LINE L2 -7 3306 2738 567 219 0 0 chr6 153099318 153099610 -29315632 + (TG)n Simple_repeat Simple_repeat 1 292 0 10687 130 3 12 chr6 153099894 153102424 -29312818 + L1PA11 LINE L1 3626 6158 -16 23 0 0 0 chr6 153102424 153102447 -29312795 + AT_rich Low_complexity Low_complexity 1 23 0 794 206 19 0 chr6 153102473 153102633 -29312609 + MLT1B LTR MaLR 180 342 -48 261 0 0 0 chr6 153102957 153102986 -29312256 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 184 200 0 0 chr6 153103244 153103274 -29311968 - L2 LINE L2 -1723 1591 1562 2225 196 22 7 chr6 153104085 153104755 -29310487 + L1ME4a LINE L1 4791 5472 -712 295 243 144 69 chr6 153104913 153104988 -29310254 + L1ME4a LINE L1 5538 5606 -515 2277 124 0 0 chr6 153104988 153105286 -29309956 + AluSx SINE Alu 1 298 -14 295 243 144 69 chr6 153105286 153105544 -29309698 + L1ME4a LINE L1 5606 5896 -225 2357 99 3 0 chr6 153105617 153105919 -29309323 - AluSg SINE Alu -3 307 5 22 0 0 0 chr6 153106326 153106348 -29308894 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 153106362 153106388 -29308854 + AT_rich Low_complexity Low_complexity 1 26 0 255 299 104 61 chr6 153107025 153107189 -29308053 - L2 LINE L2 -5 3267 3097 1594 297 110 21 chr6 153107537 153108534 -29306708 + L2 LINE L2 2234 3313 0 973 259 71 78 chr6 153108637 153108835 -29306407 - HAL1 LINE L1 -162 2345 2147 2043 113 7 17 chr6 153108835 153109135 -29306107 - AluSq SINE Alu -16 297 1 973 259 71 78 chr6 153109135 153109693 -29305549 - HAL1 LINE L1 -360 2147 1594 196 302 54 54 chr6 153110144 153110273 -29304969 - MER5B DNA MER1_type -27 151 23 287 304 52 35 chr6 153110150 153110265 -29304977 + MER5A DNA MER1_type 44 160 -29 349 200 0 27 chr6 153110317 153110392 -29304850 - Tigger5 DNA MER2_type 0 2323 2251 293 140 0 35 chr6 153110359 153110416 -29304826 - Tigger5 DNA MER2_type -2268 55 1 * 24 0 0 0 chr6 153110416 153110440 -29304802 + AT_rich Low_complexity Low_complexity 1 24 0 1933 186 18 23 chr6 153111965 153112353 -29302889 - MLT1B LTR MaLR -1 389 4 2391 103 0 0 chr6 153112364 153112676 -29302566 - AluSx SINE Alu 0 312 1 1071 212 5 22 chr6 153113001 153113223 -29302019 + AluJb SINE Alu 77 294 -18 714 146 11 38 chr6 153113223 153113408 -29301834 + GA-rich Low_complexity Low_complexity 1 180 0 23 0 0 0 chr6 153115168 153115191 -29300051 + AT_rich Low_complexity Low_complexity 1 23 0 397 298 61 23 chr6 153115610 153115803 -29299439 - MIR SINE MIR -57 205 7 230 296 80 32 chr6 153116927 153117052 -29298190 - L2 LINE L2 0 3313 3183 27 0 0 0 chr6 153117491 153117518 -29297724 + AT_rich Low_complexity Low_complexity 1 27 0 229 236 20 142 chr6 153117775 153117923 -29297319 + L2 LINE L2 3079 3208 -64 238 404 52 12 chr6 153117966 153118295 -29296947 + L2 LINE L2 282 623 -2691 232 348 94 45 chr6 153118656 153118923 -29296319 + L2 LINE L2 2226 2505 -809 2038 119 4 0 chr6 153119411 153119689 -29295553 + AluSx SINE Alu 1 279 -33 753 238 77 0 chr6 153120762 153120943 -29294299 + MIR SINE MIR 30 224 -38 486 288 106 31 chr6 153121024 153121184 -29294058 - MIR3 SINE MIR -5 203 32 2012 98 80 3 chr6 153121258 153121545 -29293697 - AluSc SINE Alu 0 309 1 306 308 158 8 chr6 153121647 153121767 -29293475 + MIR3 SINE MIR 1 138 -70 234 0 0 0 chr6 153121912 153121938 -29293304 + (T)n Simple_repeat Simple_repeat 1 26 0 272 200 133 0 chr6 153122073 153122163 -29293079 + L1ME3 LINE L1 5847 5948 -222 964 94 0 8 chr6 153122164 153122291 -29292951 + AluJb SINE Alu 1 126 -186 351 229 7 90 chr6 153122314 153122458 -29292784 + L1ME3 LINE L1 5934 6065 -97 390 21 0 0 chr6 153123215 153123262 -29291980 + (TG)n Simple_repeat Simple_repeat 1 47 0 1166 176 146 17 chr6 153123662 153123963 -29291279 - L1MC3 LINE L1 -1 7784 7445 2076 103 10 0 chr6 153123963 153124263 -29290979 - AluY SINE Alu -8 303 1 1126 140 6 0 chr6 153124266 153124430 -29290812 - AluSg/x SINE Alu -20 292 128 2496 66 0 7 chr6 153124432 153124734 -29290508 - AluY SINE Alu -11 300 1 960 218 99 0 chr6 153124735 153124978 -29290264 - L1MC3 LINE L1 -330 7455 7189 271 291 0 12 chr6 153124978 153125064 -29290178 - MLT1F1 LTR MaLR -442 125 41 2970 189 45 11 chr6 153125065 153125773 -29289469 - L1MC3 LINE L1 -684 7101 6370 2171 155 82 12 chr6 153126859 153127259 -29287983 - MSTA LTR MaLR 0 428 1 3213 226 126 44 chr6 153128551 153129549 -29285693 - L1MDa LINE L1 -5405 1135 48 2255 91 0 14 chr6 153129549 153129846 -29285396 + AluSx SINE Alu 1 293 -19 3213 226 126 44 chr6 153129846 153129880 -29285362 - L1MDa LINE L1 -6492 48 18 298 250 186 12 chr6 153130167 153130339 -29284903 - L1ME2 LINE L1 0 6164 5963 35 41 0 0 chr6 153131523 153131572 -29283670 + AT_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr6 153131696 153131723 -29283519 + AT_rich Low_complexity Low_complexity 1 27 0 442 244 51 30 chr6 153132407 153132604 -29282638 + L1MC5 LINE L1 7731 7931 -30 270 272 126 10 chr6 153132738 153132841 -29282401 + MIR3 SINE MIR 81 195 -13 552 65 0 13 chr6 153133144 153133221 -29282021 + MADE1 DNA Mariner 5 80 0 183 42 0 0 chr6 153133992 153134016 -29281226 + (ATTTG)n Simple_repeat Simple_repeat 1 24 0 379 260 16 47 chr6 153134644 153134771 -29280471 - L2 LINE L2 0 3313 3191 1618 161 17 45 chr6 153135485 153135777 -29279465 - AluJb SINE Alu -28 284 1 245 365 58 49 chr6 153136221 153136569 -29278673 + L2 LINE L2 2832 3182 -90 1736 179 3 17 chr6 153136708 153137010 -29278232 - AluJb SINE Alu -14 298 1 21 36 0 0 chr6 153137042 153137070 -29278172 + AT_rich Low_complexity Low_complexity 1 28 0 788 307 8 35 chr6 153137342 153137599 -29277643 - MIR SINE MIR 0 262 13 2436 101 0 0 chr6 153138014 153138321 -29276921 - AluSx SINE Alu -5 307 1 2417 89 10 0 chr6 153138485 153138788 -29276454 - AluSx SINE Alu -6 306 1 188 222 0 0 chr6 153138865 153138910 -29276332 - MIR SINE MIR -138 124 80 2249 114 10 0 chr6 153138952 153139250 -29275992 - AluSx SINE Alu -11 301 1 439 290 83 51 chr6 153139318 153139594 -29275648 - L2 LINE L2 -33 3280 2996 1734 176 0 20 chr6 153139752 153140048 -29275194 - AluJo SINE Alu -19 293 4 382 207 74 58 chr6 153140571 153140692 -29274550 - L3 LINE CR1 -5 1572 1450 300 27 0 0 chr6 153140776 153140813 -29274429 + (TG)n Simple_repeat Simple_repeat 2 38 0 226 268 12 49 chr6 153140949 153141031 -29274211 - L2 LINE L2 -39 3233 3155 22 35 0 0 chr6 153141598 153141627 -29273615 + AT_rich Low_complexity Low_complexity 1 29 0 3247 115 37 47 chr6 153141614 153142212 -29273030 - L1MA4 LINE L1 0 6300 5709 250 237 0 17 chr6 153142689 153142748 -29272494 - L2 LINE L2 0 3313 3256 1155 153 0 20 chr6 153143089 153143268 -29271974 - AluSg/x SINE Alu 0 312 136 2255 86 13 3 chr6 153143268 153143570 -29271672 - AluY SINE Alu -6 305 1 1155 153 0 20 chr6 153143570 153143586 -29271656 - AluSg/x SINE Alu -176 136 121 2460 213 77 44 chr6 153144207 153144337 -29270905 - L1MD2 LINE L1 -192 6167 6043 2554 47 23 0 chr6 153144337 153144638 -29270604 - AluY SINE Alu -3 308 1 2460 213 77 44 chr6 153144638 153144737 -29270505 - L1MD2 LINE L1 -316 6043 5949 1662 87 62 4 chr6 153144737 153144978 -29270264 + AluSc SINE Alu 44 298 -11 2460 213 77 44 chr6 153144978 153145406 -29269836 - L1MD2 LINE L1 -410 5949 5478 2156 150 82 13 chr6 153145406 153145858 -29269384 - L1MB2 LINE L1 -2 6169 5687 2460 213 77 44 chr6 153145858 153145954 -29269288 - L1MD2 LINE L1 -881 5478 5387 * 5901 123 19 15 chr6 153145948 153146976 -29268266 - L1MA4A LINE L1 -5 6298 5266 1594 118 138 0 chr6 153146972 153147276 -29267966 + L1 LINE L1 3982 4327 -1819 * 1666 115 35 19 chr6 153147283 153147604 -29267638 - AluJb SINE Alu 0 373 49 3245 164 20 9 chr6 153147604 153148244 -29266998 + L1 LINE L1 4609 5255 -891 2042 225 29 9 chr6 153148238 153148785 -29266457 - L1MD2 LINE L1 -749 5397 4840 * 717 227 96 35 chr6 153148796 153149880 -29265362 - L1MB2 LINE L1 -810 5336 4320 2205 111 0 7 chr6 153149880 153150186 -29265056 - AluSg SINE Alu -6 304 1 717 227 96 35 chr6 153150186 153150415 -29264827 - L1MB2 LINE L1 -1826 4320 4107 2277 74 3 0 chr6 153150415 153150725 -29264517 - AluSp SINE Alu 0 311 1 717 227 96 35 chr6 153150725 153151080 -29264162 - L1MB2 LINE L1 -2039 4107 3427 478 240 28 168 chr6 153151117 153151264 -29263978 + L2 LINE L2 2960 3126 -187 3349 173 42 35 chr6 153151264 153151987 -29263255 - L1MB8 LINE L1 -6 6172 5445 478 240 28 168 chr6 153151987 153152018 -29263224 + L2 LINE L2 3126 3160 -153 1483 189 13 35 chr6 153152018 153152335 -29262907 - AluJo SINE Alu -2 310 1 478 240 28 168 chr6 153152335 153152547 -29262695 + L2 LINE L2 3160 3296 -17 213 39 0 0 chr6 153152551 153152577 -29262665 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 153153005 153153027 -29262215 + AT_rich Low_complexity Low_complexity 1 22 0 849 148 31 0 chr6 153154582 153154744 -29260498 - L1MB2 LINE L1 -18 6153 5987 276 180 40 0 chr6 153155114 153155164 -29260078 - MIR SINE MIR 0 262 211 612 184 0 0 chr6 153155179 153155288 -29259954 - AluJo SINE Alu -24 288 180 267 176 0 0 chr6 153155291 153155342 -29259900 - AluJo SINE Alu -166 136 86 526 308 16 22 chr6 153155364 153155549 -29259693 - MIR SINE MIR -77 185 2 2514 61 3 3 chr6 153155701 153156012 -29259230 - AluY SINE Alu 0 311 1 292 341 37 0 chr6 153156022 153156157 -29259085 - MIR SINE MIR -74 188 49 21 0 0 0 chr6 153156368 153156389 -29258853 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 153156416 153156439 -29258803 + AT_rich Low_complexity Low_complexity 1 23 0 767 164 8 15 chr6 153156439 153156573 -29258669 - FLAM_C SINE Alu 0 133 1 1022 81 5 3 chr6 153157268 153157507 -29257735 + AluSg SINE Alu 1 299 0 1849 155 26 20 chr6 153157620 153157924 -29257318 + AluJb SINE Alu 7 312 0 2132 89 7 0 chr6 153158190 153158501 -29256741 - AluY SINE Alu 0 313 1 4026 94 4 0 chr6 153159051 153159603 -29255639 - MER41A LTR ERV1 0 554 1 24 67 0 0 chr6 153159639 153159684 -29255558 + AT_rich Low_complexity Low_complexity 1 45 0 258 270 180 0 chr6 153160005 153160105 -29255137 + MIR SINE MIR 47 164 -98 1564 77 5 0 chr6 153160105 153160300 -29254942 + AluSx SINE Alu 1 196 -116 539 45 0 0 chr6 153160302 153160368 -29254874 + AluSq/x SINE Alu 70 135 -177 1750 147 62 0 chr6 153160368 153160641 -29254601 + AluSg SINE Alu 1 290 -20 2301 87 0 10 chr6 153160958 153161256 -29253986 + AluSq SINE Alu 1 295 -18 1318 268 44 56 chr6 153161283 153161855 -29253387 - MLT1K LTR MaLR -3 585 21 609 247 40 7 chr6 153162054 153162204 -29253038 - MIR SINE MIR -2 260 106 262 270 117 54 chr6 153163469 153163580 -29251662 - L2 LINE L2 -1 3312 3195 292 350 38 22 chr6 153163610 153163793 -29251449 - L2 LINE L2 -201 3112 2927 440 307 71 21 chr6 153164440 153164678 -29250564 + L3 LINE CR1 1305 1554 -23 514 319 16 16 chr6 153165291 153165473 -29249769 - MIR3 SINE MIR -4 204 23 207 189 0 0 chr6 153166153 153166190 -29249052 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2172 108 7 7 chr6 153167208 153167504 -29247738 - AluSq SINE Alu -17 296 1 306 0 0 0 chr6 153170930 153170964 -29244278 + (CA)n Simple_repeat Simple_repeat 2 35 0 2690 19 0 13 chr6 153175552 153175865 -29239377 + AluY SINE Alu 1 309 -2 1872 106 36 11 chr6 153175916 153176191 -29239051 + AluSx SINE Alu 13 294 -18 25 31 0 0 chr6 153176191 153176223 -29239019 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr6 153176247 153176277 -29238965 + AT_rich Low_complexity Low_complexity 1 30 0 363 309 98 74 chr6 153176303 153176640 -29238602 - L2 LINE L2 0 3272 2928 237 132 0 0 chr6 153177090 153177128 -29238114 + (CA)n Simple_repeat Simple_repeat 1 38 0 32 43 0 0 chr6 153177590 153177636 -29237606 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr6 153178050 153178075 -29237167 + AT_rich Low_complexity Low_complexity 1 25 0 1723 148 92 0 chr6 153178510 153178781 -29236461 + AluJb SINE Alu 1 296 -16 195 129 0 0 chr6 153178818 153178849 -29236393 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 2272 105 0 0 chr6 153180610 153180904 -29234338 + AluSx SINE Alu 1 294 -18 2352 106 0 0 chr6 153182215 153182518 -29232724 + AluSx SINE Alu 1 303 -9 1865 136 3 63 chr6 153183360 153183676 -29231566 + AluJb SINE Alu 3 299 -13 194 331 140 32 chr6 153185068 153185346 -29229896 + L2 LINE L2 1129 1436 -1878 193 316 18 0 chr6 153185408 153185465 -29229777 + L2 LINE L2 3014 3071 -201 231 314 16 65 chr6 153185805 153185929 -29229313 + L2 LINE L2 2399 2516 -798 550 266 120 10 chr6 153186232 153186424 -29228818 - MIR SINE MIR -1 261 49 1419 199 134 36 chr6 153186662 153186968 -29228274 - MSTD LTR MaLR -2 394 46 2070 131 0 0 chr6 153186968 153187274 -29227968 - AluSg SINE Alu 0 306 1 1419 199 134 36 chr6 153187274 153187323 -29227919 - MSTD LTR MaLR -350 46 3 373 298 11 0 chr6 153187421 153187515 -29227727 - L2 LINE L2 0 3272 3178 576 334 84 31 chr6 153187777 153188097 -29227145 + L3b LINE CR1 1227 1563 -20 22 56 0 0 chr6 153188591 153188627 -29226615 + AT_rich Low_complexity Low_complexity 1 36 0 3427 147 23 7 chr6 153189063 153189670 -29225572 + L1MB3 LINE L1 5564 6180 -3 403 95 0 0 chr6 153190052 153190115 -29225127 - Alu SINE Alu -2 308 246 821 76 0 8 chr6 153190255 153190374 -29224868 + (TA)n Simple_repeat Simple_repeat 2 119 0 989 142 58 0 chr6 153190376 153190531 -29224711 - AluJb SINE Alu -14 298 135 240 59 0 0 chr6 153190531 153190565 -29224677 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 2065 125 3 3 chr6 153190579 153190875 -29224367 - AluSq SINE Alu -17 296 1 205 291 0 0 chr6 153191079 153191134 -29224108 - L2 LINE L2 -214 3058 3004 1940 140 34 0 chr6 153192079 153192372 -29222870 + AluSx SINE Alu 1 303 -9 337 65 0 0 chr6 153192462 153192508 -29222734 - MADE1 DNA Mariner -34 46 1 1074 191 64 10 chr6 153193565 153193769 -29221473 - MER58A DNA MER1_type 0 224 10 300 269 37 56 chr6 153194636 153194744 -29220498 - MIR SINE MIR -84 124 19 1785 123 40 22 chr6 153195010 153195287 -29219955 + AluSx SINE Alu 24 305 -7 251 292 83 8 chr6 153195447 153195567 -29219675 + L1 LINE L1 4217 4345 -1801 715 266 95 39 chr6 153195890 153196300 -29218942 - MLT1J LTR MaLR -76 435 3 21 57 0 0 chr6 153196657 153196692 -29218550 + AT_rich Low_complexity Low_complexity 1 35 0 2231 104 3 3 chr6 153198487 153198786 -29216456 - AluSg SINE Alu -11 299 1 468 0 0 0 chr6 153199038 153199090 -29216152 + (TTATA)n Simple_repeat Simple_repeat 4 55 0 261 276 41 20 chr6 153199276 153199374 -29215868 - L1MC4a LINE L1 -1 7807 7708 808 204 0 0 chr6 153199469 153199601 -29215641 + FLAM_C SINE Alu 2 133 -10 645 184 9 9 chr6 153200142 153200256 -29214986 + FLAM_C SINE Alu 8 121 -22 21 0 0 0 chr6 153201226 153201247 -29213995 + AT_rich Low_complexity Low_complexity 1 21 0 802 100 0 0 chr6 153201281 153201391 -29213851 + AluSg/x SINE Alu 200 309 -3 402 21 0 0 chr6 153202144 153202191 -29213051 + (TG)n Simple_repeat Simple_repeat 2 48 0 1306 149 5 0 chr6 153202559 153202788 -29212454 + AluJb SINE Alu 84 313 0 234 281 85 0 chr6 153202912 153202994 -29212248 - L1ME4a LINE L1 -58 6063 5975 878 159 8 0 chr6 153203013 153203139 -29212103 + FLAM_A SINE Alu 1 127 -6 2907 76 3 6 chr6 153203778 153204134 -29211108 - THE1A LTR MaLR 0 355 1 12071 93 16 5 chr6 153204134 153205697 -29209545 - THE1A-int LTR MaLR 0 1580 1 2969 71 6 0 chr6 153205697 153206050 -29209192 - THE1A LTR MaLR 0 355 1 848 136 0 64 chr6 153206769 153206909 -29208333 + FLAM_C SINE Alu 1 131 -2 1115 243 5 0 chr6 153208404 153208618 -29206624 - MER58A DNA MER1_type -8 216 2 313 300 127 20 chr6 153208946 153209199 -29206043 - L2 LINE L2 -1063 2251 1972 574 257 173 5 chr6 153209606 153209812 -29205430 - L1ME LINE L1 -719 5434 5264 2356 66 3 16 chr6 153209812 153210115 -29205127 - AluY SINE Alu -12 299 1 574 257 173 5 chr6 153210115 153210304 -29204938 - L1ME LINE L1 -889 5264 4962 326 266 87 11 chr6 153210323 153210507 -29204735 - L1ME LINE L1 -2946 3183 2986 714 202 8 0 chr6 153210519 153210648 -29204594 - MER5B DNA MER1_type 0 178 49 395 296 76 25 chr6 153210655 153210932 -29204310 - L1ME LINE L1 -3433 2696 2406 26 0 0 0 chr6 153210941 153210967 -29204275 + AT_rich Low_complexity Low_complexity 1 26 0 490 355 62 45 chr6 153210994 153211509 -29203733 - L1ME LINE L1 -5588 531 8 2113 240 41 32 chr6 153211611 153212145 -29203097 - MLT1H1 LTR MaLR 0 555 17 1779 129 21 35 chr6 153212763 153213072 -29202170 + AluJb SINE Alu 1 305 0 36 82 0 0 chr6 153213454 153213539 -29201703 + AT_rich Low_complexity Low_complexity 1 85 0 2043 146 0 0 chr6 153213650 153213937 -29201305 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr6 153213948 153213968 -29201274 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1903 172 0 0 chr6 153214274 153214577 -29200665 + AluJo SINE Alu 5 307 -5 308 300 100 39 chr6 153214803 153214933 -29200309 + MIR SINE MIR 27 164 -98 280 341 0 12 chr6 153215147 153215232 -29200010 - L2 LINE L2 -6 3307 3224 305 47 23 0 chr6 153215507 153215550 -29199692 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 32404 84 7 8 chr6 153215550 153219391 -29195851 - L1PA7 LINE L1 0 6154 2320 2416 88 0 0 chr6 153219391 153219699 -29195543 - AluY SINE Alu -3 308 1 32404 84 7 8 chr6 153219699 153221145 -29194097 - L1PA7 LINE L1 -3834 2320 874 1704 146 29 58 chr6 153221495 153221803 -29193439 + AluJo SINE Alu 1 299 -13 285 361 0 35 chr6 153222223 153222283 -29192959 + MIR3 SINE MIR 20 81 -127 3290 109 58 22 chr6 153222283 153222404 -29192838 - MER75 DNA T2_type 0 514 399 1857 168 3 3 chr6 153222404 153222707 -29192535 + AluJo SINE Alu 1 303 -9 3290 109 58 22 chr6 153222707 153223081 -29192161 - MER75 DNA T2_type -115 399 1 285 361 0 35 chr6 153223081 153223164 -29192078 + MIR3 SINE MIR 81 158 -50 630 254 78 107 chr6 153223171 153223668 -29191574 - MLT1H LTR MaLR -7 542 60 667 179 103 38 chr6 153223710 153223894 -29191348 + MER63 DNA MER1_type 56 251 -810 505 268 49 40 chr6 153224053 153224252 -29190990 - MIR SINE MIR -41 221 16 2451 76 0 7 chr6 153224336 153224639 -29190603 + AluSg SINE Alu 1 301 -9 246 214 68 86 chr6 153225223 153225340 -29189902 - L1ME4a LINE L1 -19 6102 5988 1873 155 0 17 chr6 153225820 153226111 -29189131 + AluJo SINE Alu 11 296 -16 301 127 0 0 chr6 153226345 153226400 -29188842 + L1MB3 LINE L1 6128 6182 -1 1398 201 63 33 chr6 153227205 153227266 -29187976 - MER2 DNA MER2_type 0 344 286 2169 136 3 0 chr6 153227266 153227567 -29187675 - AluSx SINE Alu -10 302 1 1398 201 63 33 chr6 153227567 153227839 -29187403 - MER2 DNA MER2_type -58 286 1 249 57 0 0 chr6 153228494 153228529 -29186713 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 843 154 0 0 chr6 153228531 153228648 -29186594 - FLAM_C SINE Alu -15 118 2 224 233 14 0 chr6 153228833 153228906 -29186336 + (TA)n Simple_repeat Simple_repeat 1 74 0 1855 161 3 0 chr6 153228968 153229259 -29185983 + AluSx SINE Alu 1 292 -20 490 269 73 20 chr6 153229291 153229536 -29185706 - L1ME4a LINE L1 -303 5818 5561 365 278 54 58 chr6 153229658 153229732 -29185510 - L1ME4a LINE L1 -748 5398 5325 1530 163 4 8 chr6 153229732 153229984 -29185258 + AluJo SINE Alu 46 296 -16 365 278 54 58 chr6 153229984 153230132 -29185110 - L1ME4a LINE L1 -821 5325 5177 226 265 117 26 chr6 153230371 153230601 -29184641 - L1ME4a LINE L1 -1301 4845 4595 319 240 31 10 chr6 153231372 153231468 -29183774 + L1MC4a LINE L1 6074 6171 -1637 227 282 35 0 chr6 153232089 153232174 -29183068 + L1ME4a LINE L1 5989 6076 -45 2550 56 3 0 chr6 153232476 153232780 -29182462 + AluY SINE Alu 1 305 -6 2805 113 13 65 chr6 153232975 153233212 -29182030 - Tigger2a DNA MER2_type -2274 434 231 1704 144 59 7 chr6 153233212 153233483 -29181759 + AluSg SINE Alu 1 285 -25 2805 113 13 65 chr6 153233483 153233703 -29181539 - Tigger2a DNA MER2_type -2477 231 1 2607 49 0 0 chr6 153233734 153234040 -29181202 - AluY SINE Alu -5 306 1 561 149 11 0 chr6 153234459 153234553 -29180689 + FRAM SINE Alu 52 146 -30 207 0 0 0 chr6 153234557 153234580 -29180662 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2286 112 3 0 chr6 153234749 153235052 -29180190 + AluSx SINE Alu 1 304 -8 27 0 0 0 chr6 153235066 153235093 -29180149 + AT_rich Low_complexity Low_complexity 1 27 0 1943 131 0 0 chr6 153235922 153236196 -29179046 + AluSx SINE Alu 1 274 -38 3243 126 57 0 chr6 153236757 153237266 -29177976 + L1MA5 LINE L1 5760 6297 -3 31 44 0 0 chr6 153237266 153237311 -29177931 + AT_rich Low_complexity Low_complexity 1 45 0 592 260 31 26 chr6 153237465 153237657 -29177585 + MIR SINE MIR 70 262 0 2219 121 89 9 chr6 153237662 153238009 -29177233 - THE1C LTR MaLR 0 375 1 402 281 68 60 chr6 153238285 153238520 -29176722 - L2 LINE L2 0 3313 3077 1696 218 25 45 chr6 153238523 153238968 -29176274 - MLT2B2 LTR ERVL 0 515 80 2365 143 104 0 chr6 153238968 153239354 -29175888 - MSTB LTR MaLR 0 426 1 5298 171 43 3 chr6 153239354 153240250 -29174992 - MSTB-int LTR MaLR 0 1651 720 1627 177 14 4 chr6 153240850 153241127 -29174115 + AluJo SINE Alu 1 280 -32 726 202 8 8 chr6 153241341 153241465 -29173777 - FLAM_A SINE Alu -9 124 1 809 163 0 22 chr6 153241521 153241656 -29173586 + FLAM_C SINE Alu 1 132 -1 230 299 63 58 chr6 153241884 153242058 -29173184 - L2 LINE L2 -225 3047 2873 248 364 95 20 chr6 153242130 153242383 -29172859 - L2 LINE L2 -799 2515 2244 22 0 0 0 chr6 153244481 153244503 -29170739 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 153244784 153244812 -29170430 + AT_rich Low_complexity Low_complexity 1 28 0 461 17 17 0 chr6 153246294 153246352 -29168890 + (TA)n Simple_repeat Simple_repeat 1 59 0 2082 107 0 24 chr6 153246999 153247327 -29167915 + AluSx SINE Alu 1 321 0 553 274 36 47 chr6 153247853 153248068 -29167174 - MER20B DNA MER1_type -4 215 1 198 0 0 0 chr6 153248327 153248349 -29166893 + (T)n Simple_repeat Simple_repeat 1 22 0 26 50 0 0 chr6 153250772 153250812 -29164430 + AT_rich Low_complexity Low_complexity 1 40 0 959 147 0 0 chr6 153250812 153250955 -29164287 + FLAM_C SINE Alu 1 143 0 1909 135 3 47 chr6 153251471 153251789 -29163453 - AluJo SINE Alu -4 308 5 1771 144 61 0 chr6 153251903 153252180 -29163062 + AluSx SINE Alu 1 294 -18 26 0 0 0 chr6 153252727 153252753 -29162489 + AT_rich Low_complexity Low_complexity 1 26 0 1730 181 7 3 chr6 153253110 153253403 -29161839 + AluJo SINE Alu 6 299 -13 813 179 0 36 chr6 153253539 153253679 -29161563 - AluJo SINE Alu -176 136 2 831 275 67 114 chr6 153253792 153254505 -29160737 - L2 LINE L2 -447 2867 2188 506 285 7 26 chr6 153254935 153255086 -29160156 - MIR SINE MIR -1 261 114 1846 174 32 40 chr6 153255176 153255579 -29159663 + LTR37A LTR ERV1 1 400 -26 261 200 0 0 chr6 153255584 153255634 -29159608 + MIR SINE MIR 173 222 -40 231 277 62 77 chr6 153255651 153255781 -29159461 - L2 LINE L2 -47 3225 3098 2439 76 0 3 chr6 153256094 153256398 -29158844 - AluY SINE Alu -8 303 1 780 184 16 0 chr6 153256458 153256583 -29158659 + FLAM_A SINE Alu 1 127 -6 413 159 0 0 chr6 153256676 153256739 -29158503 - FLAM SINE Alu -12 131 69 2014 157 0 0 chr6 153256854 153257153 -29158089 + AluSx SINE Alu 1 299 -13 196 250 21 0 chr6 153257559 153257607 -29157635 + MIR SINE MIR 206 254 -8 502 316 72 10 chr6 153257645 153257854 -29157388 + MIR SINE MIR 1 222 -40 2510 147 47 87 chr6 153258083 153258599 -29156643 + LTR42 LTR ERVL 1 495 0 2059 141 0 3 chr6 153258849 153259147 -29156095 - AluSx SINE Alu -15 297 1 466 312 42 23 chr6 153259282 153259497 -29155745 + MIR SINE MIR 3 221 -41 1741 167 24 3 chr6 153259535 153259823 -29155419 + AluJb SINE Alu 1 294 -18 352 311 22 0 chr6 153259855 153259945 -29155297 + MIR SINE MIR 8 99 -163 2119 141 37 28 chr6 153259946 153260301 -29154941 - THE1B LTR MaLR -1 363 6 228 0 0 0 chr6 153260302 153260328 -29154914 - THE1A LTR MaLR -329 26 1 2234 123 92 2 chr6 153260375 153260952 -29154290 - MER72 LTR ERV1 -58 664 2 328 284 10 0 chr6 153260953 153261055 -29154187 + MIR SINE MIR 116 218 -44 231 229 96 24 chr6 153261054 153261137 -29154105 - L2 LINE L2 0 3313 3225 * 2309 94 0 0 chr6 153261301 153261589 -29153653 - AluSq SINE Alu -25 288 1 487 257 0 0 chr6 153263354 153263455 -29151787 + L2 LINE L2 3208 3308 -5 865 172 0 15 chr6 153263808 153263942 -29151300 - FLAM_C SINE Alu 0 133 2 1596 162 0 15 chr6 153264544 153264816 -29150426 - AluJb SINE Alu -44 268 1 2224 75 4 0 chr6 153266494 153266799 -29148443 - AluSp SINE Alu 0 306 1 394 122 110 12 chr6 153267432 153267514 -29147728 + L1MB7 LINE L1 6095 6184 0 1426 206 111 19 chr6 153268798 153269177 -29146065 - MLT1C LTR MaLR 0 467 54 276 291 89 70 chr6 153269963 153270234 -29145008 - L2 LINE L2 -78 3194 2919 278 200 36 0 chr6 153270406 153270461 -29144781 - MER66B LTR ERV1 -142 344 288 7572 97 15 11 chr6 153270715 153276210 -29139032 - L1PA7 LINE L1 0 7592 1148 275 291 23 35 chr6 153276646 153276732 -29138510 - MIR3 SINE MIR -9 199 115 313 278 21 89 chr6 153277573 153277764 -29137478 + L2 LINE L2 3136 3313 0 208 139 0 0 chr6 153277922 153277958 -29137284 + (T)n Simple_repeat Simple_repeat 1 36 0 395 236 35 113 chr6 153278444 153278673 -29136569 + L2 LINE L2 3103 3313 0 1545 209 35 11 chr6 153278962 153279249 -29135993 + AluJo SINE Alu 3 296 -6 208 283 33 0 chr6 153279813 153279873 -29135369 + GA-rich Low_complexity Low_complexity 4 65 0 2247 111 0 3 chr6 153280037 153280335 -29134907 - AluSx SINE Alu -15 297 1 27 29 0 0 chr6 153280335 153280369 -29134873 + AT_rich Low_complexity Low_complexity 1 34 0 1106 135 25 0 chr6 153280430 153280593 -29134649 + AluSg/x SINE Alu 135 301 -9 2232 92 0 14 chr6 153281438 153281733 -29133509 + AluSq SINE Alu 1 291 -22 21 57 0 0 chr6 153282835 153282870 -29132372 + AT_rich Low_complexity Low_complexity 1 35 0 407 312 188 18 chr6 153284496 153284826 -29130416 + L2 LINE L2 2928 3313 0 2094 102 3 17 chr6 153284959 153285254 -29129988 - AluSg SINE Alu -19 291 1 1770 160 32 22 chr6 153285316 153285679 -29129563 - MER47B DNA MER2_type 0 418 1 1201 107 177 5 chr6 153286101 153286364 -29128878 + Tigger4(Zombi) DNA MER2_type 44 2731 0 1234 241 174 0 chr6 153286933 153287335 -29127907 - HAL1 LINE L1 -631 1876 1405 3324 83 16 18 chr6 153287364 153287809 -29127433 - MLT2A1 LTR ERVL 0 444 1 5145 53 2 0 chr6 153287809 153288427 -29126815 - HERVL-A1 LTR ERVL 0 5654 5036 * 25983 70 10 15 chr6 153288424 153291692 -29123550 - HERVL-A1 LTR ERVL -964 4690 1408 2752 103 11 0 chr6 153291692 153292043 -29123199 - THE1A LTR MaLR 0 355 1 12089 97 17 1 chr6 153292043 153293598 -29121644 - THE1A-int LTR MaLR 0 1580 1 2866 88 3 0 chr6 153293598 153293952 -29121290 - THE1A LTR MaLR 0 355 1 201 86 29 0 chr6 153293952 153293987 -29121255 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1805 167 0 11 chr6 153293987 153294274 -29120968 - AluSx SINE Alu -1 318 1 25983 70 10 15 chr6 153294274 153295710 -29119532 - HERVL-A1 LTR ERVL -4241 1413 5 3356 74 0 35 chr6 153295714 153296174 -29119068 - MLT2A1 LTR ERVL 0 444 1 403 239 119 9 chr6 153296174 153296387 -29118855 - HAL1 LINE L1 -1176 1331 1095 2465 93 0 0 chr6 153296408 153296720 -29118522 - AluSp SINE Alu 0 313 2 764 293 75 9 chr6 153296760 153297091 -29118151 - HAL1 LINE L1 -1595 912 560 224 260 0 0 chr6 153297118 153297168 -29118074 + (TA)n Simple_repeat Simple_repeat 1 50 0 1358 233 14 3 chr6 153297172 153297464 -29117778 - MER82 DNA MER2_type -6 647 353 1032 151 0 0 chr6 153297467 153297619 -29117623 + AluSg/x SINE Alu 134 285 -27 1819 170 41 0 chr6 153297642 153297983 -29117259 - MER82 DNA MER2_type -298 355 1 524 247 77 88 chr6 153298160 153298525 -29116717 - HAL1 LINE L1 -2112 395 35 1796 162 23 10 chr6 153298963 153299266 -29115976 - AluJo SINE Alu -5 307 1 989 229 14 0 chr6 153299723 153299937 -29115305 - MER58A DNA MER1_type -6 218 2 622 213 27 0 chr6 153299948 153300098 -29115144 - L1MD2 LINE L1 -10 6349 6196 1160 219 39 50 chr6 153300136 153300407 -29114835 - L1MD2 LINE L1 -264 6095 5827 2074 170 0 0 chr6 153300407 153300719 -29114523 + AluJb SINE Alu 1 312 0 1160 219 39 50 chr6 153300719 153300804 -29114438 - L1MD2 LINE L1 -532 5827 5743 528 309 73 0 chr6 153301163 153301328 -29113914 + MIR SINE MIR 34 210 -52 319 83 33 0 chr6 153301448 153301508 -29113734 + (TA)n Simple_repeat Simple_repeat 2 63 0 1863 157 4 0 chr6 153302196 153302477 -29112765 - AluJo SINE Alu -30 282 1 357 224 206 9 chr6 153302968 153303075 -29112167 - L2 LINE L2 -3 3310 3183 24 32 0 0 chr6 153303172 153303203 -29112039 + AT_rich Low_complexity Low_complexity 1 31 0 230 330 134 31 chr6 153303841 153303938 -29111304 + MIR3 SINE MIR 10 116 -92 22 0 0 0 chr6 153306063 153306085 -29109157 + AT_rich Low_complexity Low_complexity 1 22 0 263 183 0 0 chr6 153306304 153306364 -29108878 - L1MB4 LINE L1 -11 6169 6110 339 262 170 31 chr6 153306390 153306619 -29108623 - L1MC4 LINE L1 -1 8041 7781 23 33 0 0 chr6 153306910 153306940 -29108302 + AT_rich Low_complexity Low_complexity 1 30 0 4159 220 34 17 chr6 153306942 153308105 -29107137 - L1 LINE L1 -886 5260 4078 3017 221 89 12 chr6 153308146 153309430 -29105812 + L1ME2 LINE L1 1863 3200 -3015 * 3812 192 69 76 chr6 153309428 153309986 -29105256 + L1ME2 LINE L1 3920 4480 -1923 2248 106 0 10 chr6 153309986 153310288 -29104954 + AluSg SINE Alu 1 299 -11 3812 192 69 76 chr6 153310288 153310557 -29104685 + L1ME2 LINE L1 4480 4749 -1654 2162 121 30 3 chr6 153310557 153310862 -29104380 + AluSq SINE Alu 1 313 0 3812 192 69 76 chr6 153310862 153311194 -29104048 + L1ME2 LINE L1 4749 5082 -1321 2076 176 36 50 chr6 153311194 153311436 -29103806 - MSTB1 LTR MaLR 0 432 197 1996 150 0 7 chr6 153311436 153311736 -29103506 - AluSx SINE Alu -14 298 1 2076 176 36 50 chr6 153311736 153311931 -29103311 - MSTB1 LTR MaLR -235 197 1 3812 192 69 76 chr6 153311931 153312439 -29102803 + L1ME2 LINE L1 5082 5592 -811 1899 134 11 11 chr6 153312439 153312722 -29102520 + AluSx SINE Alu 19 301 -11 3812 192 69 76 chr6 153312722 153312819 -29102423 + L1ME2 LINE L1 5592 5688 -715 2463 85 0 0 chr6 153312819 153313124 -29102118 - AluY SINE Alu -6 305 1 3812 192 69 76 chr6 153313124 153313638 -29101604 + L1ME2 LINE L1 5688 6402 -1 2288 119 0 0 chr6 153314290 153314601 -29100641 - AluSq SINE Alu -2 311 1 425 276 79 59 chr6 153315726 153315980 -29099262 - MIR SINE MIR -3 259 1 336 245 284 0 chr6 153315980 153316135 -29099107 + L2 LINE L2 3113 3311 -2 1559 174 78 0 chr6 153317319 153317589 -29097653 - AluJb SINE Alu -11 301 11 1822 180 3 3 chr6 153318519 153318814 -29096428 - AluJb SINE Alu -17 295 1 226 273 0 0 chr6 153318936 153318980 -29096262 - L2 LINE L2 -21 3292 3249 2395 99 3 3 chr6 153319247 153319559 -29095683 + AluSp SINE Alu 2 313 0 2178 121 0 0 chr6 153319979 153320277 -29094965 - AluSx SINE Alu -14 298 1 198 0 0 0 chr6 153320365 153320387 -29094855 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 2417 91 0 0 chr6 153320389 153320698 -29094544 - AluSx SINE Alu -3 309 1 385 282 135 6 chr6 153320699 153320862 -29094380 + MIR SINE MIR 50 233 -29 477 175 10 31 chr6 153322641 153322738 -29092504 - Tigger5 DNA MER2_type 0 2323 2229 1250 142 10 0 chr6 153322792 153322996 -29092246 + MER2 DNA MER2_type 1 206 -139 186 43 0 0 chr6 153323036 153323059 -29092183 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 268 258 30 0 chr6 153323060 153323126 -29092116 + MER2 DNA MER2_type 278 345 0 951 150 9 78 chr6 153323163 153323492 -29091750 - L1M3 LINE L1 -711 5705 5420 1211 187 19 0 chr6 153323492 153323706 -29091536 - AluJo SINE Alu 0 312 95 6678 214 50 15 chr6 153323726 153325567 -29089675 - L1M3 LINE L1 -985 5397 3493 1914 179 0 0 chr6 153325581 153325882 -29089360 - AluSx SINE Alu -11 301 1 9803 154 9 2 chr6 153325921 153328401 -29086841 - L1PA11 LINE L1 -8 7604 5098 1070 123 0 0 chr6 153328401 153328551 -29086691 + AluSg/x SINE Alu 147 296 -14 11745 206 33 37 chr6 153328551 153329881 -29085361 - L1PA11 LINE L1 -2513 5071 3737 2116 139 3 0 chr6 153329881 153330191 -29085051 - AluSx SINE Alu -1 311 1 11745 206 33 37 chr6 153330191 153333133 -29082109 - L1PA11 LINE L1 -3847 3737 2 11585 162 75 27 chr6 153333140 153334222 -29081020 - L1M3 LINE L1 -2910 3472 2443 2151 134 73 12 chr6 153334222 153334565 -29080677 + THE1B LTR MaLR 1 364 0 12069 84 3 2 chr6 153334565 153336144 -29079098 + THE1B-int LTR MaLR 1 1580 0 2147 130 72 20 chr6 153336144 153336489 -29078753 + THE1B LTR MaLR 1 363 -1 11585 162 75 27 chr6 153336489 153336732 -29078510 - L1M3 LINE L1 -3939 2443 2213 1028 145 180 0 chr6 153336732 153336932 -29078310 + MER46A DNA MER2_type 1 236 0 11585 162 75 27 chr6 153336932 153337311 -29077931 - L1M3 LINE L1 -4169 2213 1853 687 203 8 0 chr6 153337311 153337434 -29077808 - FLAM_A SINE Alu -6 127 4 11585 162 75 27 chr6 153337434 153338356 -29076886 - L1M3 LINE L1 -4529 1853 976 465 19 0 0 chr6 153338356 153338410 -29076832 + (TG)n Simple_repeat Simple_repeat 1 54 0 11585 162 75 27 chr6 153338410 153339090 -29076152 - L1M3 LINE L1 -5406 976 4 221 306 82 10 chr6 153339725 153339767 -29075475 + L2 LINE L2 2757 2795 -519 2320 74 10 7 chr6 153339767 153340063 -29075179 + AluSc SINE Alu 1 297 -12 221 306 82 10 chr6 153340063 153340118 -29075124 + L2 LINE L2 2795 2861 -453 962 279 65 63 chr6 153340163 153340608 -29074634 + L2 LINE L2 2863 3308 -5 1650 197 0 29 chr6 153340786 153341095 -29074147 + AluJo SINE Alu 1 300 -12 9450 155 20 63 chr6 153341324 153344304 -29070938 - L1MA4A LINE L1 -6 6999 3891 2509 68 0 3 chr6 153344304 153344614 -29070628 - AluY SINE Alu -2 309 1 9450 155 20 63 chr6 153344614 153344662 -29070580 - L1MA4A LINE L1 -3114 3891 3842 2346 90 13 6 chr6 153344662 153344973 -29070269 - AluSp SINE Alu 0 313 1 9450 155 20 63 chr6 153344973 153345964 -29069278 - L1MA4A LINE L1 -3163 3842 3145 2211 22 140 0 chr6 153345964 153346236 -29069006 - AluY SINE Alu -1 310 1 9450 155 20 63 chr6 153346236 153346303 -29068939 - L1MA4A LINE L1 -3860 3145 3077 * 17042 168 49 8 chr6 153346289 153348844 -29066398 - L1PB4 LINE L1 0 6872 4425 186 43 0 0 chr6 153348844 153348867 -29066375 + (TTG)n Simple_repeat Simple_repeat 2 24 0 17042 168 49 8 chr6 153348867 153349516 -29065726 - L1PB4 LINE L1 -2447 4425 3804 2371 53 40 10 chr6 153349516 153349815 -29065427 - AluY SINE Alu -3 308 1 17042 168 49 8 chr6 153349815 153350991 -29064251 - L1PB4 LINE L1 -3068 3804 2678 2190 112 6 34 chr6 153350991 153351313 -29063929 - AluSq SINE Alu 0 313 1 17042 168 49 8 chr6 153351313 153353528 -29061714 - L1PB4 LINE L1 -4194 2678 1 3725 235 40 59 chr6 153353529 153354640 -29060602 - L1MA4A LINE L1 -5034 1815 727 1727 170 27 3 chr6 153354785 153355085 -29060157 - AluJo SINE Alu -2 310 4 541 191 53 15 chr6 153355405 153355536 -29059706 - MIR SINE MIR -63 199 64 1548 136 114 4 chr6 153357956 153358228 -29057014 - AluJb SINE Alu -10 302 1 446 244 49 56 chr6 153359248 153359475 -29055767 + L1ME3 LINE L1 5932 6148 -14 24 0 0 0 chr6 153359733 153359757 -29055485 + AT_rich Low_complexity Low_complexity 1 24 0 1808 154 14 7 chr6 153362016 153362302 -29052940 - AluJb SINE Alu -24 288 1 2057 100 0 4 chr6 153364626 153364895 -29050347 - AluSc SINE Alu -23 286 19 1291 235 17 0 chr6 153365164 153365398 -29049844 + MER8 DNA MER2_type 2 239 0 287 305 8 25 chr6 153366817 153366935 -29048307 + L2 LINE L2 3197 3312 -1 261 0 0 0 chr6 153367903 153367932 -29047310 + (CAA)n Simple_repeat Simple_repeat 2 30 0 485 159 117 2 chr6 153369926 153370081 -29045161 + MER3 DNA MER1_type 7 209 0 195 42 0 0 chr6 153371244 153371268 -29043974 + (CAA)n Simple_repeat Simple_repeat 2 25 0 969 309 92 8 chr6 153372708 153373110 -29042132 + HAL1 LINE L1 5 440 -2067 911 211 148 36 chr6 153373171 153373555 -29041687 + HAL1 LINE L1 632 1058 -1449 431 270 121 28 chr6 153373806 153374054 -29041188 + L1M4 LINE L1 4082 4352 -1794 215 250 0 19 chr6 153375112 153375164 -29040078 - L2 LINE L2 -950 2364 2314 186 43 0 0 chr6 153375673 153375696 -29039546 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 381 202 0 56 chr6 153378774 153378863 -29036379 - MIR SINE MIR -87 175 92 314 242 73 79 chr6 153380180 153380358 -29034884 + MER5B DNA MER1_type 2 178 0 338 352 37 26 chr6 153382301 153382574 -29032668 + L2 LINE L2 2150 2425 -889 420 302 116 6 chr6 153382600 153382772 -29032470 - MIR SINE MIR -25 237 47 301 333 20 0 chr6 153385221 153385323 -29029919 + L2 LINE L2 2655 2758 -556 198 328 0 0 chr6 153385364 153385422 -29029820 - L2 LINE L2 -562 2752 2695 630 272 56 10 chr6 153386196 153386391 -29028851 + MIR SINE MIR 1 204 -58 189 0 0 0 chr6 153387136 153387157 -29028085 + (A)n Simple_repeat Simple_repeat 1 21 0 591 323 45 14 chr6 153388347 153388570 -29026672 + MIR SINE MIR 14 243 -19 849 165 0 0 chr6 153388641 153388774 -29026468 + FLAM_C SINE Alu 1 133 -10 32 26 0 0 chr6 153391713 153391752 -29023490 + AT_rich Low_complexity Low_complexity 1 39 0 337 327 39 43 chr6 153394062 153394316 -29020926 - MIR SINE MIR -3 259 7 604 270 96 22 chr6 153394434 153394664 -29020578 + MIR SINE MIR 15 261 -1 195 265 133 24 chr6 153395268 153395351 -29019891 - L2 LINE L2 -159 3113 3022 192 77 0 0 chr6 153395415 153395441 -29019801 + (T)n Simple_repeat Simple_repeat 1 26 0 512 264 19 7 chr6 153395988 153396143 -29019099 - L1M4 LINE L1 -3090 3056 2900 * 1458 143 45 14 chr6 153396140 153396426 -29018816 - L1MC1 LINE L1 0 6333 6039 920 110 26 7 chr6 153396428 153396583 -29018659 - L1MC1 LINE L1 -373 5971 5814 1993 124 3 80 chr6 153396600 153396938 -29018304 - AluSx SINE Alu 0 312 1 4394 218 77 106 chr6 153397037 153398376 -29016866 - L1MEc LINE L1 -2716 3499 2124 351 104 0 0 chr6 153398376 153398424 -29016818 - HY1 scRNA scRNA -64 48 1 4394 218 77 106 chr6 153398424 153400016 -29015226 - L1MEc LINE L1 -4091 2124 682 977 206 9 44 chr6 153400016 153400244 -29014998 + MER58A DNA MER1_type 1 220 -4 4394 218 77 106 chr6 153400244 153400878 -29014364 - L1MEc LINE L1 -5533 682 32 2691 264 182 45 chr6 153401093 153401231 -29014011 - L2 LINE L2 -5 3308 3190 254 136 23 0 chr6 153401231 153401275 -29013967 + L1MEc LINE L1 696 740 -5656 2691 264 182 45 chr6 153401275 153402669 -29012573 - L2 LINE L2 -123 3190 1522 1236 274 169 6 chr6 153402670 153403180 -29012062 - L2 LINE L2 -2120 1194 602 893 245 159 3 chr6 153404376 153404690 -29010552 - L1MD2 LINE L1 -21 6338 5976 180 0 0 0 chr6 153404763 153404783 -29010459 + (CTA)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr6 153405036 153405057 -29010185 + (TG)n Simple_repeat Simple_repeat 2 22 0 249 154 26 13 chr6 153405057 153405135 -29010107 + (TA)n Simple_repeat Simple_repeat 2 80 0 501 272 40 23 chr6 153405135 153405308 -29009934 - MIR SINE MIR -58 204 29 603 186 39 0 chr6 153406341 153406467 -29008775 - AluJb SINE Alu 0 306 177 706 139 0 0 chr6 153406576 153406684 -29008558 - FLAM_C SINE Alu 0 143 36 1281 207 60 23 chr6 153407743 153408095 -29007147 - MLT1A1 LTR MaLR 0 365 1 1517 231 119 25 chr6 153408413 153408850 -29006392 + MLT2B1 LTR ERVL 1 478 -42 287 288 233 53 chr6 153408893 153409258 -29005984 + L2 LINE L2 1233 1531 -1783 2318 100 0 0 chr6 153409258 153409557 -29005685 - AluSc SINE Alu -10 299 1 287 288 233 53 chr6 153409557 153409757 -29005485 + L2 LINE L2 1531 1900 -1414 255 189 0 19 chr6 153409761 153409814 -29005428 - MIR SINE MIR -106 156 105 185 292 56 14 chr6 153410111 153410183 -29005059 - MIR SINE MIR -60 148 74 286 195 98 86 chr6 153410372 153410546 -29004696 - MER115 DNA AcHobo -57 636 461 1066 287 48 12 chr6 153410694 153411025 -29004217 + MER115 DNA AcHobo 1 343 -350 433 239 51 72 chr6 153411053 153411329 -29003913 + MER115 DNA AcHobo 424 693 0 414 289 0 16 chr6 153411479 153411607 -29003635 + MLT1I LTR MaLR 278 403 -6 2099 102 41 14 chr6 153411846 153412139 -29003103 + AluSx SINE Alu 1 301 -11 2246 102 10 0 chr6 153412165 153412470 -29002772 + AluSg SINE Alu 1 308 -2 351 0 0 0 chr6 153412470 153412509 -29002733 + (CA)n Simple_repeat Simple_repeat 2 40 0 538 193 89 7 chr6 153413830 153413965 -29001277 + MLT1B LTR MaLR 1 146 -244 398 315 56 41 chr6 153414145 153414342 -29000900 + MIR SINE MIR 20 219 -43 1039 265 56 20 chr6 153415529 153415831 -28999411 + MLT1J LTR MaLR 1 313 -198 543 255 142 43 chr6 153415836 153416161 -28999081 + L1ME3 LINE L1 4797 5153 -993 1194 226 119 42 chr6 153416204 153416708 -28998534 + L1ME3 LINE L1 5406 5948 -216 513 175 0 70 chr6 153416709 153416823 -28998419 + AluJb SINE Alu 176 281 -31 443 220 42 78 chr6 153416849 153417040 -28998202 + L1ME3 LINE L1 5936 6119 -43 441 277 129 7 chr6 153417496 153417651 -28997591 + MIR SINE MIR 2 175 -87 23 0 0 0 chr6 153418336 153418359 -28996883 + AT_rich Low_complexity Low_complexity 1 23 0 277 180 0 0 chr6 153418469 153418519 -28996723 + L2 LINE L2 3217 3266 -6 25 51 0 0 chr6 153418923 153418962 -28996280 + AT_rich Low_complexity Low_complexity 1 39 0 787 240 53 24 chr6 153418990 153419198 -28996044 - MIR SINE MIR -20 242 29 339 286 195 18 chr6 153419198 153419852 -28995390 + L1 LINE L1 3902 4707 -1439 340 127 114 0 chr6 153420009 153420088 -28995154 + L1ME3 LINE L1 3852 3939 -2207 4509 174 116 54 chr6 153420092 153420701 -28994541 + L1MD3 LINE L1 6654 7224 -771 299 122 0 0 chr6 153420701 153420750 -28994492 + MLT1F1 LTR MaLR 1 49 -518 4509 174 116 54 chr6 153420750 153421343 -28993899 + L1MD3 LINE L1 7224 7981 -14 2728 238 57 35 chr6 153421339 153422477 -28992765 + L1ME3 LINE L1 3914 5076 -1070 * 2451 88 0 0 chr6 153422481 153422787 -28992455 + AluY SINE Alu 1 306 -5 372 248 65 18 chr6 153422788 153423002 -28992240 + L1ME3 LINE L1 5200 5424 -740 487 250 58 32 chr6 153423006 153423194 -28992048 + L1ME3 LINE L1 5610 5802 -360 531 168 0 11 chr6 153423202 153423297 -28991945 - MER58A DNA MER1_type -1 223 130 884 187 0 7 chr6 153423323 153423473 -28991769 - FRAM SINE Alu -16 160 12 407 206 0 0 chr6 153423484 153423557 -28991685 - MER58A DNA MER1_type -34 73 1 671 199 192 39 chr6 153423558 153423870 -28991372 + L1ME3 LINE L1 5803 6162 0 354 308 70 7 chr6 153423923 153424066 -28991176 + L1MEd LINE L1 1081 1232 -4887 204 159 37 19 chr6 153424076 153424183 -28991059 + (TA)n Simple_repeat Simple_repeat 1 109 0 366 265 97 31 chr6 153424256 153424452 -28990790 + L1MEd LINE L1 2719 2927 -3202 238 196 7 189 chr6 153424854 153425002 -28990240 + MER3 DNA MER1_type 9 129 -80 306 312 116 4 chr6 153425472 153425608 -28989634 - L1ME3 LINE L1 -55 6115 5963 259 245 86 73 chr6 153425815 153425925 -28989317 - L1ME3 LINE L1 -393 5771 5657 410 241 127 46 chr6 153425925 153426162 -28989080 + MER112 DNA MER1_type 1 256 0 259 245 86 73 chr6 153426162 153426202 -28989040 - L1ME3 LINE L1 -507 5657 5619 376 264 194 71 chr6 153426977 153427359 -28987883 + L1M2 LINE L1 572 1000 -5849 327 260 96 123 chr6 153427437 153427803 -28987439 - L1M2 LINE L1 -5734 1115 760 430 242 121 0 chr6 153427912 153428036 -28987206 - MIR SINE MIR -19 243 105 617 276 187 26 chr6 153428036 153428623 -28986619 - HAL1b LINE L1 -186 1162 481 5821 50 0 4 chr6 153428656 153429375 -28985867 - L1PA7 LINE L1 -2 6152 5437 7546 74 10 3 chr6 153429375 153430519 -28984723 + L1P LINE L1 4275 5422 -743 399 256 39 64 chr6 153430527 153430730 -28984512 - HAL1b LINE L1 -915 433 236 2070 98 6 76 chr6 153431356 153431673 -28983569 - AluSx SINE Alu -15 297 3 574 245 113 5 chr6 153431929 153432141 -28983101 - MER102b DNA MER1_type 0 341 107 329 191 116 26 chr6 153432479 153432617 -28982625 + L1ME2 LINE L1 3861 4009 -2137 963 266 86 41 chr6 153432621 153433088 -28982154 - MLT1D LTR MaLR -10 495 8 694 213 6 0 chr6 153433126 153433286 -28981956 + L1ME2 LINE L1 4615 4775 -1371 2109 130 10 0 chr6 153433288 153433589 -28981653 + AluSx SINE Alu 1 304 -8 396 243 116 63 chr6 153433636 153433716 -28981526 + L1ME2 LINE L1 4762 4836 -1310 1760 174 0 0 chr6 153433716 153434018 -28981224 - AluSx SINE Alu 0 302 1 396 243 116 63 chr6 153434018 153434204 -28981038 + L1ME2 LINE L1 4836 5043 -1103 937 184 163 14 chr6 153434210 153434487 -28980755 + MER33 DNA MER1_type 7 324 0 1578 222 57 8 chr6 153434499 153435194 -28980048 + L1ME2 LINE L1 5069 5922 -242 3120 65 17 60 chr6 153435194 153435658 -28979584 - MLT2A1 LTR ERVL 0 444 1 1578 222 57 8 chr6 153435658 153435903 -28979339 + L1ME2 LINE L1 5922 6153 -11 206 206 16 95 chr6 153436087 153436150 -28979092 - MIR SINE MIR -130 78 21 361 333 103 28 chr6 153436760 153437120 -28978122 + L2 LINE L2 671 1057 -2257 624 226 115 12 chr6 153437181 153437319 -28977923 + L1MC4 LINE L1 7047 7169 -719 2271 138 50 37 chr6 153437319 153437803 -28977439 + L1MA8 LINE L1 5802 6291 0 624 226 115 12 chr6 153437803 153438018 -28977224 + L1MC4 LINE L1 7169 7532 -356 826 201 0 0 chr6 153438025 153438169 -28977073 + FRAM SINE Alu 1 143 -33 180 0 0 0 chr6 153438175 153438195 -28977047 + (CAA)n Simple_repeat Simple_repeat 2 21 0 709 250 81 24 chr6 153438209 153438331 -28976911 + L1MC4 LINE L1 7559 7673 -369 2067 114 10 0 chr6 153438331 153438621 -28976621 + AluSg SINE Alu 1 293 -17 709 250 81 24 chr6 153438621 153438830 -28976412 + L1MC4 LINE L1 7673 7909 -133 1460 153 50 47 chr6 153439084 153439405 -28975837 + MLT1A1 LTR MaLR 10 331 -34 2053 100 4 11 chr6 153439413 153439724 -28975518 - AluSg SINE Alu 0 309 1 810 186 0 0 chr6 153439755 153439884 -28975358 - FLAM_C SINE Alu -4 129 1 202 182 36 0 chr6 153439895 153439950 -28975292 + (TA)n Simple_repeat Simple_repeat 2 58 0 326 70 49 63 chr6 153439952 153440094 -28975148 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 237 330 94 12 chr6 153440125 153440243 -28974999 - MIR SINE MIR -70 138 14 204 232 129 41 chr6 153441008 153441109 -28974133 - MIR3 SINE MIR -1 207 101 10739 173 60 24 chr6 153441240 153441637 -28973605 + L1MC3 LINE L1 5198 5579 -2206 2571 88 37 0 chr6 153441637 153441988 -28973254 + THE1B LTR MaLR 1 364 0 10739 173 60 24 chr6 153441988 153442907 -28972335 + L1MC3 LINE L1 5579 6463 -1322 2225 133 0 0 chr6 153442907 153443215 -28972027 - AluSx SINE Alu -4 308 1 10739 173 60 24 chr6 153443215 153443463 -28971779 + L1MC3 LINE L1 6463 6700 -1085 2172 108 64 6 chr6 153443463 153443807 -28971435 + THE1B LTR MaLR 1 364 0 10739 173 60 24 chr6 153443807 153444737 -28970505 + L1MC3 LINE L1 6700 7785 0 2278 101 0 10 chr6 153444746 153445042 -28970200 + AluSx SINE Alu 1 293 -19 190 292 42 0 chr6 153445057 153445105 -28970137 - MER5B DNA MER1_type -54 124 75 235 268 183 21 chr6 153445250 153445392 -28969850 - MER112 DNA MER1_type -93 167 3 195 278 19 0 chr6 153445392 153445446 -28969796 - L2 LINE L2 -80 3233 3179 1628 167 0 42 chr6 153446068 153446356 -28968886 + AluJo SINE Alu 1 276 -36 582 28 0 0 chr6 153446362 153446434 -28968808 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 21 36 0 0 chr6 153447387 153447415 -28967827 + AT_rich Low_complexity Low_complexity 1 28 0 448 219 61 18 chr6 153447436 153447568 -28967674 + L1ME2 LINE L1 6036 6334 0 291 311 73 12 chr6 153448207 153448371 -28966871 - L1ME LINE L1 -294 5827 5654 999 226 50 131 chr6 153448397 153449110 -28966132 + L1ME LINE L1 5110 5749 -372 2664 45 0 6 chr6 153449110 153449422 -28965820 + AluY SINE Alu 1 310 -1 999 226 50 131 chr6 153449422 153449489 -28965753 + L1ME LINE L1 5749 5820 -301 * 6513 132 12 14 chr6 153449488 153451168 -28964074 - L1PB1 LINE L1 0 6151 4474 1980 133 0 23 chr6 153451260 153451562 -28963680 - AluJb SINE Alu -17 295 1 1870 131 67 0 chr6 153451699 153451981 -28963261 - AluSx SINE Alu -11 301 1 511 201 48 8 chr6 153452371 153452501 -28962741 + MLT1E2 LTR MaLR 427 624 -2 974 224 49 2 chr6 153452504 153452830 -28962412 + MLT1E2-int LTR MaLR 2 440 -1172 763 230 167 9 chr6 153452835 153453165 -28962077 + L1MEc LINE L1 696 1077 -5319 246 220 99 11 chr6 153454136 153454227 -28961015 + L1MC4 LINE L1 7943 8041 -1 2004 180 31 30 chr6 153454250 153454800 -28960442 - MLT2A2 LTR ERVL -8 546 1 1654 184 0 48 chr6 153456434 153456750 -28958492 + AluJo SINE Alu 1 301 -11 497 241 94 9 chr6 153457125 153457337 -28957905 + L1MEc LINE L1 1123 1352 -4863 1490 188 25 19 chr6 153457423 153457743 -28957499 + L1MB8 LINE L1 4593 4914 -1232 * 1761 158 123 14 chr6 153457735 153458102 -28957140 + L1MB8 LINE L1 5759 6165 -13 586 256 162 30 chr6 153458211 153458441 -28956801 + L1ME3 LINE L1 5176 5374 -788 1925 172 0 3 chr6 153458441 153458744 -28956498 + AluSx SINE Alu 1 302 -10 586 256 162 30 chr6 153458744 153459155 -28956087 + L1ME3 LINE L1 5374 5951 -211 2038 164 0 0 chr6 153459385 153459697 -28955545 + AluSx SINE Alu 1 312 0 1998 129 22 22 chr6 153459733 153460044 -28955198 + AluSx SINE Alu 1 311 -1 197 262 98 0 chr6 153460274 153460335 -28954907 - MIR SINE MIR 0 262 196 39756 76 11 10 chr6 153460336 153466468 -28948774 - L1PA6 LINE L1 -15 6139 11 380 246 66 78 chr6 153466475 153466542 -28948700 - MIR SINE MIR -41 221 155 2055 148 43 38 chr6 153466542 153466913 -28948329 - THE1C LTR MaLR -2 373 1 10983 124 9 30 chr6 153466913 153468527 -28946715 - THE1C-int LTR MaLR 0 1580 1 2297 145 13 26 chr6 153468527 153468907 -28946335 - THE1C LTR MaLR 0 375 1 380 246 66 78 chr6 153468907 153469004 -28946238 - MIR SINE MIR -104 158 57 1722 176 17 40 chr6 153469747 153470049 -28945193 + AluJo SINE Alu 2 296 -16 21 36 0 0 chr6 153470125 153470153 -28945089 + AT_rich Low_complexity Low_complexity 1 28 0 425 230 30 24 chr6 153470652 153470719 -28944523 + MER112 DNA MER1_type 8 73 -187 2428 112 29 56 chr6 153470719 153471093 -28944149 - THE1B LTR MaLR 0 364 1 425 230 30 24 chr6 153471093 153471190 -28944052 + MER112 DNA MER1_type 73 173 -87 273 57 0 0 chr6 153471409 153471444 -28943798 + (CAAT)n Simple_repeat Simple_repeat 1 35 0 230 287 176 44 chr6 153471498 153471634 -28943608 + MIR3 SINE MIR 3 156 -52 * 333 281 73 0 chr6 153471623 153471719 -28943523 + L2 LINE L2 3170 3272 0 2077 118 11 0 chr6 153472285 153472572 -28942670 - AluSx SINE Alu -22 290 1 537 264 104 22 chr6 153472820 153473002 -28942240 - MER117 DNA MER1_type 0 197 1 3428 103 11 4 chr6 153473436 153473913 -28941329 + L1PA8 LINE L1 5692 6171 -1 414 0 0 0 chr6 153473915 153473961 -28941281 + (TG)n Simple_repeat Simple_repeat 2 47 0 227 333 181 12 chr6 153474357 153474528 -28940714 - MIR3 SINE MIR -7 201 2 2790 166 46 8 chr6 153475303 153475804 -28939438 - L1MC1 LINE L1 0 6333 5814 1225 196 38 26 chr6 153475805 153476070 -28939172 - AluJb SINE Alu -15 297 30 1659 145 0 4 chr6 153476085 153476347 -28938895 - L1MC1 LINE L1 -507 5826 5566 180 0 0 0 chr6 153476915 153476935 -28938307 + (T)n Simple_repeat Simple_repeat 1 20 0 2359 163 61 24 chr6 153477164 153477575 -28937667 - MSTB LTR MaLR 0 426 1 5063 190 38 4 chr6 153477575 153478513 -28936729 - MSTB-int LTR MaLR 0 1651 682 2014 142 0 3 chr6 153479194 153479482 -28935760 - AluJb SINE Alu -20 292 6 330 183 135 19 chr6 153480603 153480707 -28934535 - MIR SINE MIR -75 187 72 2165 104 0 7 chr6 153481234 153481532 -28933710 + AluSc SINE Alu 1 296 -13 225 0 0 0 chr6 153481609 153481634 -28933608 + (A)n Simple_repeat Simple_repeat 1 25 0 274 261 109 113 chr6 153481715 153481953 -28933289 + L2 LINE L2 3030 3266 -6 236 270 61 35 chr6 153482516 153482631 -28932611 + MER5B DNA MER1_type 32 149 -29 365 299 70 66 chr6 153483893 153484036 -28931206 + MIR SINE MIR 14 160 -102 483 220 107 54 chr6 153484036 153484204 -28931038 - MER69A DNA AcHobo 0 177 1 365 299 70 66 chr6 153484204 153484304 -28930938 + MIR SINE MIR 160 258 -4 239 268 181 0 chr6 153484370 153484497 -28930745 - MIR SINE MIR -30 232 83 261 272 179 23 chr6 153484880 153485053 -28930189 - MIR SINE MIR -43 219 20 1926 100 63 7 chr6 153485106 153485375 -28929867 + AluSq SINE Alu 1 284 -29 275 0 29 0 chr6 153485378 153485413 -28929829 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 243 170 189 0 chr6 153485549 153485602 -28929640 + L2 LINE L2 3251 3313 0 208 293 24 0 chr6 153485768 153485850 -28929392 + GA-rich Low_complexity Low_complexity 6 89 0 1222 123 0 0 chr6 153486458 153486629 -28928613 - AluSq SINE Alu -3 310 140 2308 115 0 0 chr6 153486634 153486938 -28928304 - AluSx SINE Alu -8 304 1 216 149 0 0 chr6 153487797 153487844 -28927398 + (T)n Simple_repeat Simple_repeat 1 47 0 2583 117 11 19 chr6 153488331 153488404 -28926838 - THE1B LTR MaLR 0 364 292 2299 117 0 0 chr6 153488404 153488713 -28926529 + AluSx SINE Alu 1 309 -3 2583 117 11 19 chr6 153488713 153489006 -28926236 - THE1B LTR MaLR -72 292 1 29 28 0 0 chr6 153489353 153489389 -28925853 + AT_rich Low_complexity Low_complexity 1 36 0 3578 102 2 0 chr6 153489450 153489900 -28925342 + MLT2A2 LTR ERVL 3 453 0 1949 162 14 22 chr6 153490362 153490721 -28924521 + MLT1A1 LTR MaLR 10 365 0 201 39 0 0 chr6 153491185 153491211 -28924031 + (T)n Simple_repeat Simple_repeat 1 26 0 274 249 76 133 chr6 153491756 153492390 -28922852 - L1MC5 LINE L1 -15 7946 7349 894 160 149 28 chr6 153492726 153492963 -28922279 + MER21A LTR ERV1 1 264 -667 2396 149 145 38 chr6 153492969 153493465 -28921777 + MER21A LTR ERV1 377 925 -6 2289 97 3 3 chr6 153493585 153493885 -28921357 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr6 153494038 153494073 -28921169 + AT_rich Low_complexity Low_complexity 1 35 0 604 313 83 8 chr6 153494132 153494372 -28920870 - MIR SINE MIR -1 261 4 1791 182 46 26 chr6 153495027 153495396 -28919846 - MLT1C LTR MaLR 0 467 90 2880 109 7 39 chr6 153495402 153495833 -28919409 + MSTC LTR MaLR 8 424 -4 594 50 40 69 chr6 153495833 153495934 -28919308 - MLT1C LTR MaLR -369 98 1 2314 132 19 35 chr6 153496570 153496940 -28918302 + THE1B LTR MaLR 1 364 0 492 231 19 0 chr6 153497055 153497163 -28918079 - HsTC2 DNA Tc2 -1 1897 1788 1372 199 20 20 chr6 153497163 153497455 -28917787 - HsTC2 DNA Tc2 -333 1565 1274 315 204 183 54 chr6 153497484 153497577 -28917665 - HsTC2 DNA Tc2 -1780 118 14 340 347 32 16 chr6 153497667 153497857 -28917385 + MLT1K LTR MaLR 24 216 -372 304 265 111 17 chr6 153498145 153498262 -28916980 - L2 LINE L2 -7 3306 3179 21 36 0 0 chr6 153498455 153498483 -28916759 + AT_rich Low_complexity Low_complexity 1 28 0 1650 146 0 20 chr6 153498504 153498620 -28916622 - AluJb SINE Alu -63 249 132 2630 56 0 0 chr6 153498620 153498926 -28916316 - AluY SINE Alu -5 306 1 1650 146 0 20 chr6 153498926 153499063 -28916179 - AluJb SINE Alu -180 132 1 331 143 0 0 chr6 153499123 153499172 -28916070 - Alu SINE Alu -251 49 1 1870 153 18 0 chr6 153500171 153500453 -28914789 + AluSx SINE Alu 1 287 -25 1957 141 13 7 chr6 153500586 153500884 -28914358 + AluSx SINE Alu 1 300 -12 2071 126 7 3 chr6 153500994 153501296 -28913946 - AluSq SINE Alu -10 303 1 1442 30 0 6 chr6 153501761 153501927 -28913315 + L1PA2 LINE L1 5991 6155 0 294 269 39 0 chr6 153502696 153502774 -28912468 - L2 LINE L2 0 3272 3192 2165 124 3 0 chr6 153502778 153503076 -28912166 - AluSx SINE Alu -13 299 1 1665 167 0 66 chr6 153503082 153503400 -28911842 - AluJb SINE Alu -15 297 1 1999 108 51 96 chr6 153503624 153503977 -28911265 + MER1B DNA MER1_type 1 337 0 488 259 70 32 chr6 153504566 153504751 -28910491 + L1ME3A LINE L1 5681 5872 -298 1809 169 0 7 chr6 153504754 153505056 -28910186 + AluJo SINE Alu 1 300 -12 300 231 22 50 chr6 153505061 153505243 -28909999 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 428 134 0 0 chr6 153505283 153505350 -28909892 - L1MB8 LINE L1 -2 6176 6110 993 224 0 0 chr6 153505350 153505520 -28909722 + FAM SINE Alu 1 170 -5 2939 178 25 33 chr6 153505579 153506191 -28909051 - L1MB4 LINE L1 -1 6179 5573 225 247 0 41 chr6 153506212 153506285 -28908957 + L1MCa LINE L1 1995 2064 -4362 * 260 267 47 0 chr6 153506272 153506358 -28908884 + L1MC4 LINE L1 6614 6703 -1339 269 177 0 48 chr6 153506283 153506345 -28908897 - L1MCa LINE L1 -4362 2064 2006 * 280 266 97 26 chr6 153506338 153506451 -28908791 - L1MC4 LINE L1 -1339 6703 6583 278 296 123 30 chr6 153508249 153508452 -28906790 + MIR SINE MIR 41 262 0 2323 95 0 25 chr6 153508565 153508882 -28906360 - AluSg SINE Alu -1 309 1 2340 85 0 10 chr6 153508976 153509282 -28905960 + AluSg SINE Alu 1 303 -7 276 206 147 0 chr6 153510095 153510163 -28905079 + MIR SINE MIR 74 151 -111 373 312 8 40 chr6 153510358 153510483 -28904759 - L2 LINE L2 -8 3305 3185 249 184 0 0 chr6 153510793 153510842 -28904400 + L2 LINE L2 2661 2709 -605 564 161 15 92 chr6 153510844 153510878 -28904364 - Charlie1 DNA MER1_type -857 1904 1869 2350 97 3 0 chr6 153510878 153511187 -28904055 - AluY SINE Alu 0 311 2 564 161 15 92 chr6 153511187 153511282 -28903960 - Charlie1 DNA MER1_type -892 1869 1785 5343 179 43 63 chr6 153511305 153512687 -28902555 + Charlie1a DNA MER1_type 66 1420 -35 1576 127 15 39 chr6 153512697 153512957 -28902285 + AluJo SINE Alu 6 259 -53 207 204 0 23 chr6 153512984 153513028 -28902214 + L2 LINE L2 2708 2750 -564 747 169 0 59 chr6 153513034 153513170 -28902072 + FLAM_C SINE Alu 9 136 -7 762 259 183 26 chr6 153513171 153513662 -28901580 + L2 LINE L2 2735 3313 0 1991 71 52 8 chr6 153515029 153515319 -28899923 - AluSg SINE Alu 0 302 1 183 367 25 0 chr6 153515523 153515602 -28899640 + MIR SINE MIR 33 113 -95 1706 133 110 3 chr6 153515728 153516036 -28899206 - MER2 DNA MER2_type -3 341 1 273 276 142 22 chr6 153516073 153516207 -28899035 + L2 LINE L2 2934 3083 -189 316 288 88 25 chr6 153516661 153516821 -28898421 - L1ME LINE L1 -318 5852 5683 19480 100 18 1 chr6 153516839 153519467 -28895775 - Charlie3 DNA MER1_type -4 2706 37 1102 260 59 49 chr6 153519471 153519855 -28895387 - L1ME LINE L1 -514 5656 5277 2212 121 20 0 chr6 153519855 153520161 -28895081 - AluSx SINE Alu 0 312 1 1102 260 59 49 chr6 153520161 153520790 -28894452 - L1ME LINE L1 -893 5277 4639 2145 137 87 22 chr6 153520962 153521279 -28893963 - MLT1B LTR MaLR 0 390 44 1639 107 5 0 chr6 153521279 153521494 -28893748 - AluSg/x SINE Alu -11 301 86 2145 137 87 22 chr6 153521494 153521542 -28893700 - MLT1B LTR MaLR -346 44 1 2167 116 7 0 chr6 153521708 153522009 -28893233 + AluJb SINE Alu 1 303 -9 346 235 93 69 chr6 153522307 153522418 -28892824 - L1ME LINE L1 -1530 4616 4496 1770 154 26 10 chr6 153522418 153522447 -28892795 - AluSx SINE Alu -2 310 283 923 0 0 9 chr6 153522447 153522555 -28892687 + (TTTCC)n Simple_repeat Simple_repeat 3 109 0 1770 154 26 10 chr6 153522555 153522830 -28892412 - AluSx SINE Alu -29 283 1 346 235 93 69 chr6 153522830 153522922 -28892320 - L1ME LINE L1 -1650 4496 4408 813 270 15 101 chr6 153523487 153523943 -28891299 - L1MC4a LINE L1 -1767 6041 5625 1989 169 49 9 chr6 153524919 153525268 -28889974 - MLT1A1 LTR MaLR 0 365 3 342 309 174 11 chr6 153525416 153525698 -28889544 - L2 LINE L2 -181 3132 2805 1134 253 39 80 chr6 153525869 153526331 -28888911 + L2 LINE L2 2870 3312 -1 230 313 21 0 chr6 153526337 153526433 -28888809 + L1ME LINE L1 5694 5791 -371 203 88 29 0 chr6 153526548 153526582 -28888660 + (CA)n Simple_repeat Simple_repeat 2 36 0 258 244 0 26 chr6 153526724 153526802 -28888440 + L1ME LINE L1 5426 5501 -663 192 111 0 0 chr6 153527643 153527679 -28887563 + (T)n Simple_repeat Simple_repeat 1 36 0 2290 95 0 7 chr6 153527764 153528059 -28887183 - AluSg SINE Alu -17 293 1 3194 117 38 8 chr6 153528069 153528540 -28886702 - MER31A LTR ERV1 0 485 1 1970 78 107 0 chr6 153528541 153528811 -28886431 + AluSq SINE Alu 3 301 -12 555 300 15 77 chr6 153529228 153529618 -28885624 + MER115 DNA AcHobo 1 366 -327 1160 257 70 55 chr6 153530413 153531130 -28884112 + L1ME2 LINE L1 4826 5557 -605 2015 161 3 0 chr6 153531130 153531440 -28883802 - AluSx SINE Alu -1 311 1 1160 257 70 55 chr6 153531440 153531468 -28883774 + L1ME2 LINE L1 5557 5583 -579 371 354 38 17 chr6 153531540 153531777 -28883465 - HERV16 LTR ERVL -850 4804 4563 1047 182 63 48 chr6 153532034 153532327 -28882915 + L1MA9 LINE L1 6012 6312 0 433 333 0 0 chr6 153532329 153532449 -28882793 - HERV16 LTR ERVL -1383 4271 4152 * 3536 302 46 23 chr6 153532440 153533926 -28881316 - HERV16 LTR ERVL -2053 2943 1592 535 216 64 41 chr6 153533940 153534079 -28881163 + L1ME2 LINE L1 5914 6059 -103 2927 140 26 20 chr6 153534079 153534585 -28880657 - L1MA8 LINE L1 0 6291 5783 535 216 64 41 chr6 153534585 153534616 -28880626 + L1ME2 LINE L1 6059 6088 -74 5286 112 27 11 chr6 153534640 153535452 -28879790 - L1MA6 LINE L1 0 6300 5476 2689 55 0 0 chr6 153535463 153535789 -28879453 - LTR17 LTR ERV1 -454 326 1 2408 65 0 3 chr6 153535789 153536082 -28879160 - HERV17 LTR ERV1 0 8626 8335 34813 45 1 1 chr6 153536104 153540169 -28875073 - HERV17 LTR ERV1 -2607 6019 1953 263 154 0 0 chr6 153540161 153540200 -28875042 - HERV17 LTR ERV1 -8587 39 1 * 3749 82 46 4 chr6 153540201 153540700 -28874542 - LTR17 LTR ERV1 -1 779 260 7261 140 19 28 chr6 153540705 153542082 -28873160 - L1MA6 LINE L1 -743 5403 4122 866 307 68 8 chr6 153542150 153542505 -28872737 - HERV16 LTR ERVL -3569 1427 1052 306 361 135 14 chr6 153543806 153544094 -28871148 - L2 LINE L2 -400 2914 2592 1552 275 57 16 chr6 153544127 153544618 -28870624 + MLT1J LTR MaLR 1 511 0 218 385 42 10 chr6 153544636 153544828 -28870414 - L2 LINE L2 -557 2757 2560 324 260 31 21 chr6 153545094 153545190 -28870052 - MIR SINE MIR -10 252 156 1629 174 0 59 chr6 153545747 153546068 -28869174 - AluJo SINE Alu -10 302 1 3063 206 73 50 chr6 153546070 153546588 -28868654 - L1MD2 LINE L1 -13 6346 5799 2022 149 0 3 chr6 153546588 153546889 -28868353 + AluSx SINE Alu 1 300 -12 3063 206 73 50 chr6 153546889 153547216 -28868026 - L1MD2 LINE L1 -560 5799 5481 2146 99 7 3 chr6 153547217 153547510 -28867732 - AluY SINE Alu -17 294 1 1371 174 18 39 chr6 153547568 153547849 -28867393 - L1MB7 LINE L1 -20 6164 5890 1301 180 40 3 chr6 153547846 153548251 -28866991 - L1MD2 LINE L1 -746 5400 5074 * 1664 101 4 4 chr6 153548348 153548576 -28866666 + L1PA14 LINE L1 5932 6159 -2 1286 243 71 23 chr6 153548697 153549192 -28866050 - MLT2F LTR ERVL -66 597 34 1626 185 3 25 chr6 153549272 153549558 -28865684 + AluJb SINE Alu 1 280 -32 1358 11 0 43 chr6 153549558 153549746 -28865496 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 470 202 0 18 chr6 153549748 153549862 -28865380 + GA-rich Low_complexity Low_complexity 4 115 0 1900 129 0 53 chr6 153550901 153551238 -28864004 + AluJb SINE Alu 1 321 0 872 162 29 14 chr6 153551296 153551726 -28863516 + CT-rich Low_complexity Low_complexity 1 436 0 352 235 154 25 chr6 153551728 153551890 -28863352 - MIR SINE MIR -46 216 34 748 263 68 17 chr6 153552408 153552644 -28862598 - MIR SINE MIR -1 261 14 212 250 18 0 chr6 153552783 153552839 -28862403 + GA-rich Low_complexity Low_complexity 4 60 0 1053 202 133 11 chr6 153553471 153553832 -28861410 - Zaphod DNA AcHobo -26 4005 3601 3561 124 94 73 chr6 153553976 153554771 -28860471 + L1MC2 LINE L1 5424 6235 -109 361 172 46 35 chr6 153554951 153555038 -28860204 + L1MC2 LINE L1 6248 6335 -9 268 148 49 0 chr6 153555043 153555124 -28860118 - Zaphod DNA AcHobo -3198 833 749 1347 195 41 22 chr6 153555129 153555593 -28859649 - L1MEc LINE L1 -3660 2555 2123 26 64 0 0 chr6 153556009 153556056 -28859186 + AT_rich Low_complexity Low_complexity 1 47 0 1638 134 111 23 chr6 153556110 153556453 -28858789 - THE1C LTR MaLR -2 373 1 1951 141 43 0 chr6 153556508 153556880 -28858362 - AluJb SINE Alu 0 385 1 323 200 71 0 chr6 153556960 153557030 -28858212 - MIR SINE MIR -110 152 78 525 318 69 37 chr6 153557046 153557423 -28857819 - LTR16A LTR ERVL 0 450 62 245 323 0 0 chr6 153557458 153557520 -28857722 - MIR SINE MIR -199 63 2 1455 167 60 37 chr6 153558395 153558664 -28856578 - AluJb SINE Alu -37 275 1 23 0 0 0 chr6 153558667 153558690 -28856552 + AT_rich Low_complexity Low_complexity 1 23 0 423 52 0 0 chr6 153559348 153559406 -28855836 + (TA)n Simple_repeat Simple_repeat 2 59 0 2208 122 0 0 chr6 153559406 153559693 -28855549 - AluSx SINE Alu -25 287 1 1745 171 0 11 chr6 153560792 153561120 -28854122 - AluJo SINE Alu 0 325 1 243 336 113 35 chr6 153561154 153561383 -28853859 + MIR SINE MIR 12 258 -4 23 68 0 0 chr6 153561587 153561631 -28853611 + AT_rich Low_complexity Low_complexity 1 44 0 2691 118 71 35 chr6 153561675 153562185 -28853057 + L1MA4A LINE L1 5765 6292 -11 391 286 99 6 chr6 153562728 153562910 -28852332 - LTR33 LTR ERVL -322 199 1 520 292 8 0 chr6 153563232 153563362 -28851880 - L2 LINE L2 0 3313 3183 870 162 12 6 chr6 153563688 153563855 -28851387 + MER3 DNA MER1_type 17 184 -25 2757 153 0 10 chr6 153564031 153564521 -28850721 + L1MB3 LINE L1 5491 5975 -208 2200 133 51 0 chr6 153564522 153564912 -28850330 + L1MA8 LINE L1 5621 6030 -261 988 152 57 29 chr6 153564907 153565117 -28850125 + L1MB3 LINE L1 5959 6174 -9 * 1187 79 7 0 chr6 153565598 153565750 -28849492 - AluSp SINE Alu -160 153 1 427 229 12 0 chr6 153565806 153565889 -28849353 - AluSc SINE Alu -121 188 105 1900 151 0 3 chr6 153617184 153617491 -28797751 - AluSx SINE Alu 0 306 1 192 359 120 31 chr6 153618111 153618470 -28796772 - L2 LINE L2 -570 2744 2354 * 235 259 19 0 chr6 153618466 153618520 -28796722 + L2 LINE L2 3256 3310 -3 567 307 164 0 chr6 153618522 153618747 -28796495 - MIR SINE MIR 0 262 1 278 116 0 0 chr6 153619851 153619894 -28795348 + AluJ/FLAM SINE Alu 35 77 -225 822 73 0 0 chr6 153620498 153620608 -28794634 + (TTTC)n Simple_repeat Simple_repeat 1 110 0 1812 145 7 0 chr6 153620735 153621011 -28794231 - AluSp SINE Alu -35 278 1 266 233 88 140 chr6 153621480 153621673 -28793569 - MIR SINE MIR -15 247 65 712 277 86 18 chr6 153621721 153622116 -28793126 - LTR16A LTR ERVL 0 450 1 203 189 0 0 chr6 153622618 153622655 -28792587 + A-rich Low_complexity Low_complexity 1 37 0 445 288 24 24 chr6 153622656 153622781 -28792461 + MER5A DNA MER1_type 61 185 -4 273 304 118 25 chr6 153623519 153623680 -28791562 + L2 LINE L2 2917 3092 -180 358 297 94 16 chr6 153623810 153623938 -28791304 - L2 LINE L2 -4 3309 3172 189 0 0 0 chr6 153624164 153624185 -28791057 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 25 0 25 chr6 153624650 153624671 -28790571 + AT_rich Low_complexity Low_complexity 1 22 -17 2017 103 28 11 chr6 153624671 153624953 -28790289 - AluSx SINE Alu -25 287 1 22 25 0 25 chr6 153624953 153624971 -28790271 + AT_rich Low_complexity Low_complexity 22 39 0 2249 107 7 0 chr6 153626016 153626315 -28788927 - AluSx SINE Alu -11 301 1 321 273 25 8 chr6 153626456 153626577 -28788665 - HAL1 LINE L1 -1251 1256 1134 * 1358 272 167 29 chr6 153626571 153627152 -28788090 - HAL1 LINE L1 -1843 664 4 28 29 0 0 chr6 153627895 153627930 -28787312 + AT_rich Low_complexity Low_complexity 1 35 0 1379 128 9 187 chr6 153627938 153628119 -28787123 + AluJo SINE Alu 1 94 -218 2148 109 0 29 chr6 153628119 153628431 -28786811 - AluSx SINE Alu -9 303 1 1379 128 9 187 chr6 153628431 153628592 -28786650 + AluJo SINE Alu 94 282 -30 344 237 101 22 chr6 153628622 153628761 -28786481 + L2 LINE L2 3159 3308 -5 2222 121 0 10 chr6 153629330 153629643 -28785599 - AluSq SINE Alu -3 310 1 2600 58 3 3 chr6 153629819 153630132 -28785110 + AluSp SINE Alu 1 313 0 361 211 112 58 chr6 153630458 153630644 -28784598 - MIR SINE MIR -50 212 16 2235 116 3 0 chr6 153631162 153631472 -28783770 - AluSx SINE Alu -1 311 1 324 120 0 0 chr6 153631489 153631539 -28783703 + (TTCCC)n Simple_repeat Simple_repeat 4 53 0 4971 89 36 29 chr6 153631905 153632251 -28782991 - Tigger4(Zombi) DNA MER2_type 0 2731 2389 1782 186 0 13 chr6 153632251 153632562 -28782680 - AluJb SINE Alu 0 312 6 4971 89 36 29 chr6 153632562 153632967 -28782275 - Tigger4(Zombi) DNA MER2_type -342 2389 1975 21 0 0 0 chr6 153633236 153633257 -28781985 + AT_rich Low_complexity Low_complexity 1 21 0 10877 118 45 66 chr6 153633257 153633877 -28781365 + Tigger4(Zombi) DNA MER2_type 1 633 -2098 1678 157 31 0 chr6 153633877 153634138 -28781104 + AluJo SINE Alu 7 275 -37 10877 118 45 66 chr6 153634138 153635397 -28779845 + Tigger4(Zombi) DNA MER2_type 633 1840 -891 293 239 182 0 chr6 153635499 153635587 -28779655 - MIR SINE MIR -51 211 108 330 206 68 0 chr6 153636789 153636862 -28778380 + MIR SINE MIR 163 240 -22 609 233 68 52 chr6 153636903 153637182 -28778060 - MLT1H LTR MaLR -226 323 14 260 358 36 7 chr6 153637218 153637355 -28777887 - MLT1H-int LTR MaLR -21 1714 1574 476 236 91 68 chr6 153638732 153638951 -28776291 - MLT1H LTR MaLR -263 286 22 1776 162 23 0 chr6 153638959 153639261 -28775981 - AluJb SINE Alu -3 309 1 755 196 8 8 chr6 153639447 153639580 -28775662 + AluJo/FLAM SINE Alu 1 133 -169 1422 185 27 4 chr6 153639583 153639842 -28775400 + AluJb SINE Alu 21 285 -27 1487 118 0 0 chr6 153640008 153640203 -28775039 - AluSx SINE Alu -117 195 1 235 330 0 0 chr6 153640244 153640332 -28774910 + MIR3 SINE MIR 115 202 -6 399 289 145 7 chr6 153640860 153641012 -28774230 + MIR SINE MIR 13 185 -77 2340 93 0 10 chr6 153642063 153642365 -28772877 + AluSg SINE Alu 1 299 -11 566 284 144 18 chr6 153642744 153642966 -28772276 + MIR SINE MIR 3 252 -10 2156 119 15 94 chr6 153643547 153643942 -28771300 - THE1B LTR MaLR 0 364 1 421 327 130 6 chr6 153644193 153644355 -28770887 + MER91A DNA MER1_type 1 182 -14 2954 68 8 0 chr6 153644956 153645308 -28769934 + THE1A LTR MaLR 1 355 0 2326 105 7 0 chr6 153645909 153646214 -28769028 + AluSx SINE Alu 1 307 -5 342 255 248 28 chr6 153646237 153646382 -28768860 + MER5B DNA MER1_type 2 178 0 350 246 49 25 chr6 153647701 153647823 -28767419 - L1ME4a LINE L1 -32 6089 5965 427 287 103 15 chr6 153647937 153648132 -28767110 - L1ME4a LINE L1 -361 5760 5549 5178 92 57 7 chr6 153648317 153649025 -28766217 - L1PA10 LINE L1 0 6168 5426 377 289 141 0 chr6 153649225 153649367 -28765875 + MIR SINE MIR 71 232 -30 186 133 0 0 chr6 153650634 153650664 -28764578 + (T)n Simple_repeat Simple_repeat 1 30 0 262 29 0 0 chr6 153650743 153650947 -28764295 + L1PA5 LINE L1 5972 6175 0 22 35 0 0 chr6 153652814 153652843 -28762399 + AT_rich Low_complexity Low_complexity 1 29 0 2126 135 0 0 chr6 153653311 153653622 -28761620 - AluY SINE Alu 0 311 1 1830 166 7 0 chr6 153653634 153653918 -28761324 - AluJo SINE Alu -26 286 1 1087 220 87 4 chr6 153654772 153655013 -28760229 + MIR SINE MIR 2 262 0 324 322 54 7 chr6 153655911 153656060 -28759182 + MARNA DNA Mariner 424 579 -7 2023 155 0 0 chr6 153656581 153656891 -28758351 + AluSx SINE Alu 1 310 -2 333 0 0 0 chr6 153657144 153657181 -28758061 + (CA)n Simple_repeat Simple_repeat 2 38 0 392 327 38 57 chr6 153657246 153657413 -28757829 + L2 LINE L2 2565 2725 -589 2397 170 51 18 chr6 153657413 153657481 -28757761 - L1MB2 LINE L1 -2 6169 6105 2213 137 108 59 chr6 153657481 153657889 -28757353 - MSTA LTR MaLR 0 428 1 2397 170 51 18 chr6 153657889 153658272 -28756970 - L1MB2 LINE L1 -66 6105 5703 392 327 38 57 chr6 153658272 153658422 -28756820 + L2 LINE L2 2725 2876 -438 849 201 53 0 chr6 153658423 153658684 -28756558 - FRAM SINE Alu 0 268 1 2261 97 0 31 chr6 153659920 153660239 -28755003 + AluSx SINE Alu 1 309 -3 2286 106 0 7 chr6 153661005 153661308 -28753934 + AluSq SINE Alu 1 301 -12 2259 119 0 6 chr6 153661754 153662066 -28753176 - AluSg SINE Alu 0 310 1 2738 102 16 13 chr6 153663079 153663453 -28751789 - THE1C LTR MaLR 0 375 1 227 290 0 0 chr6 153663492 153663554 -28751688 + L2 LINE L2 2283 2344 -970 350 234 27 45 chr6 153663962 153664073 -28751169 - MER94 DNA DNA -23 111 3 2317 116 0 0 chr6 153664345 153664648 -28750594 + AluSx SINE Alu 3 305 -7 237 230 0 81 chr6 153664652 153664813 -28750429 + A-rich Low_complexity Low_complexity 4 151 0 184 172 16 16 chr6 153666642 153666706 -28748536 + (TA)n Simple_repeat Simple_repeat 1 64 0 615 177 65 8 chr6 153666938 153667062 -28748180 - MER5A DNA MER1_type -56 133 3 799 272 9 127 chr6 153667247 153667298 -28747944 - MLT1L LTR MaLR -224 391 336 2830 138 122 2 chr6 153667298 153667749 -28747493 + LTR10B LTR ERV1 1 505 0 799 272 9 127 chr6 153667749 153668138 -28747104 - MLT1L LTR MaLR -279 336 3 20174 183 25 10 chr6 153668326 153675027 -28740215 - L1PA14 LINE L1 0 6812 7 1035 252 41 11 chr6 153675029 153675299 -28739943 + MER87 LTR ERV1 225 502 -39 376 223 192 0 chr6 153675350 153675480 -28739762 - MIR SINE MIR -56 206 52 528 198 11 0 chr6 153675761 153675852 -28739390 - Tigger7 DNA MER2_type 0 2487 2396 * 1258 209 105 0 chr6 153675845 153676103 -28739139 - Tigger7 DNA MER2_type -447 286 2 864 221 28 28 chr6 153676674 153676891 -28738351 + L1PA16 LINE L1 5947 6163 -3 1904 137 49 0 chr6 153676910 153677195 -28738047 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr6 153677213 153677237 -28738005 + AT_rich Low_complexity Low_complexity 1 24 0 2030 212 111 12 chr6 153677369 153677884 -28737358 - MLT1F1 LTR MaLR -1 566 1 480 339 71 8 chr6 153678112 153678351 -28736891 + LTR67 LTR ERVL 2 255 -302 282 297 0 0 chr6 153678360 153678451 -28736791 - MLT1K LTR MaLR -137 451 361 1193 239 146 69 chr6 153678502 153679059 -28736183 - MLT1G3 LTR MaLR -2 588 33 232 79 53 26 chr6 153679073 153679111 -28736131 + MLT1G1 LTR MaLR 1 39 -556 426 184 9 88 chr6 153679320 153679347 -28735895 + MIR SINE MIR 157 185 -77 1005 198 6 17 chr6 153679347 153679524 -28735718 - FAM SINE Alu 0 175 1 426 184 9 88 chr6 153679524 153679610 -28735632 + MIR SINE MIR 185 261 -1 358 129 24 59 chr6 153681144 153681229 -28734013 + tRNA-Ser-AGC tRNA tRNA 2 83 -2 2364 217 218 58 chr6 153681812 153682843 -28732399 - L1MC4a LINE L1 -109 7699 6504 216 204 0 37 chr6 153683177 153683231 -28732011 + GA-rich Low_complexity Low_complexity 3 54 0 200 158 35 35 chr6 153683608 153683665 -28731577 + (TTAAA)n Simple_repeat Simple_repeat 1 57 0 237 290 0 32 chr6 153684900 153684962 -28730280 + L2 LINE L2 3212 3271 -1 574 289 39 10 chr6 153685036 153685240 -28730002 - MER74B LTR ERVL 0 622 413 1545 114 11 66 chr6 153685240 153685348 -28729894 + L1MA1 LINE L1 6038 6150 -152 1994 162 0 0 chr6 153685348 153685657 -28729585 + AluJb SINE Alu 1 309 -3 1545 114 11 66 chr6 153685657 153685821 -28729421 + L1MA1 LINE L1 6150 6295 -7 706 200 43 7 chr6 153685862 153686002 -28729240 - MER74A LTR ERVL -190 368 224 631 225 0 8 chr6 153685975 153686095 -28729147 - MER74A LTR ERVL -439 119 1 * 1784 131 6 45 chr6 153686192 153686505 -28728737 + AluJb SINE Alu 1 301 -11 553 322 46 33 chr6 153686822 153687058 -28728184 + MIR SINE MIR 20 250 -12 4649 127 50 27 chr6 153687183 153687520 -28727722 + MER72 LTR ERV1 5 333 -389 1791 168 3 13 chr6 153687520 153687818 -28727424 - AluJo SINE Alu -17 295 1 4649 127 50 27 chr6 153687818 153688182 -28727060 + MER72 LTR ERV1 333 722 0 2552 58 0 6 chr6 153688889 153689200 -28726042 - AluY SINE Alu -2 309 1 355 257 26 26 chr6 153689498 153689611 -28725631 - L2 LINE L2 0 3313 3201 339 268 13 13 chr6 153689824 153689894 -28725348 + GA-rich Low_complexity Low_complexity 3 72 -83 2180 122 0 0 chr6 153689894 153690182 -28725060 + AluSc SINE Alu 1 288 -21 339 268 13 13 chr6 153690182 153690264 -28724978 + GA-rich Low_complexity Low_complexity 71 155 0 237 191 21 0 chr6 153690383 153690430 -28724812 + MLT1K LTR MaLR 537 584 -4 1615 256 94 20 chr6 153690650 153691031 -28724211 + MER20B DNA MER1_type 1 435 -348 1995 143 10 0 chr6 153691031 153691324 -28723918 + AluSx SINE Alu 1 296 -16 1615 256 94 20 chr6 153691324 153691484 -28723758 + MER20B DNA MER1_type 435 582 -201 2961 223 153 19 chr6 153691484 153692282 -28722960 - L1MC4a LINE L1 -308 7500 6561 249 33 0 0 chr6 153692282 153692312 -28722930 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2961 223 153 19 chr6 153692312 153692437 -28722805 - L1MC4a LINE L1 -1247 6561 6454 559 294 202 30 chr6 153692638 153693039 -28722203 - L3 LINE CR1 -801 776 307 327 264 55 11 chr6 153693043 153693134 -28722108 - MIR SINE MIR -148 114 20 784 131 0 54 chr6 153693304 153693434 -28721808 - FRAM SINE Alu 0 176 54 1131 263 95 41 chr6 153694467 153694950 -28720292 + MLT1J LTR MaLR 1 509 -2 2285 136 118 5 chr6 153695138 153695521 -28719721 - MSTA LTR MaLR -2 426 1 2194 112 0 10 chr6 153695854 153696148 -28719094 - AluSx SINE Alu -21 291 1 426 189 74 0 chr6 153698283 153698378 -28716864 + MER91C DNA MER1_type 9 110 -30 2041 201 8 6 chr6 153698549 153698913 -28716329 + MLT1A1 LTR MaLR 1 365 0 572 250 37 15 chr6 153698913 153699049 -28716193 + MER5B DNA MER1_type 22 160 -18 1480 250 67 93 chr6 153699051 153699769 -28715473 + MER21B LTR ERV1 24 714 -149 770 151 6 29 chr6 153700419 153700598 -28714644 + MLT1A1 LTR MaLR 226 365 0 295 194 0 0 chr6 153700794 153700861 -28714381 + CT-rich Low_complexity Low_complexity 1 180 0 1736 195 0 7 chr6 153700861 153701164 -28714078 - AluJo SINE Alu 0 368 1 1842 170 10 0 chr6 153701443 153701732 -28713510 + AluJo SINE Alu 1 292 -20 2122 133 3 0 chr6 153701843 153702144 -28713098 + AluSx SINE Alu 1 302 -10 459 48 0 0 chr6 153702252 153702314 -28712928 + (TA)n Simple_repeat Simple_repeat 2 63 0 1167 144 11 5 chr6 153702314 153702501 -28712741 - AluSg/x SINE Alu -4 308 121 2283 107 3 0 chr6 153702520 153702820 -28712422 - AluSp SINE Alu -11 302 2 1778 210 16 8 chr6 153702843 153703215 -28712027 - L1MB8 LINE L1 -202 5976 5602 900 184 0 35 chr6 153703219 153703393 -28711849 - AluJo SINE Alu -24 288 121 1542 194 34 13 chr6 153703399 153703794 -28711448 - L1MB8 LINE L1 -590 5588 5188 1320 221 31 3 chr6 153703812 153704102 -28711140 - AluJo SINE Alu -14 298 1 253 106 0 21 chr6 153704102 153704149 -28711093 - L1MB8 LINE L1 -945 5201 5156 2235 120 3 0 chr6 153704150 153704459 -28710783 - AluSg SINE Alu 0 310 1 9065 164 23 44 chr6 153704474 153705020 -28710222 - L1MA3 LINE L1 -1 7723 7167 1953 119 91 28 chr6 153705020 153705373 -28709869 + THE1C LTR MaLR 1 375 0 9065 164 23 44 chr6 153705373 153707745 -28707497 - L1MA3 LINE L1 -557 7167 4868 * 15764 126 132 25 chr6 153707712 153707830 -28707412 - L1MA3 LINE L1 -4530 3035 2931 2455 80 0 0 chr6 153707830 153708129 -28707113 - AluSx SINE Alu -13 299 1 15764 126 132 25 chr6 153708129 153710740 -28704502 - L1MA3 LINE L1 -4634 2931 13 258 329 37 0 chr6 153711098 153711180 -28704062 + L3 LINE CR1 1010 1094 -483 777 303 100 38 chr6 153711287 153711686 -28703556 + MLT1K LTR MaLR 165 588 0 502 284 73 104 chr6 153711686 153712126 -28703116 + L3 LINE CR1 1093 1518 -59 881 255 163 15 chr6 153712139 153712339 -28702903 + MER113 DNA MER1_type? 13 182 -339 2423 92 0 0 chr6 153712339 153712642 -28702600 + AluSc SINE Alu 1 303 -6 881 255 163 15 chr6 153712642 153712845 -28702397 + MER113 DNA MER1_type? 182 476 -45 391 262 189 16 chr6 153714151 153714273 -28700969 - MER5A DNA MER1_type -21 168 26 293 336 27 9 chr6 153714277 153714387 -28700855 - MER5A DNA MER1_type -1 188 77 296 279 118 88 chr6 153714540 153714682 -28700560 - L2 LINE L2 -30 3283 3128 3012 142 25 0 chr6 153714682 153715118 -28700124 - MER83 LTR ERV1 -1 447 1 296 279 118 88 chr6 153715118 153715237 -28700005 - L2 LINE L2 -185 3128 3014 421 306 76 0 chr6 153715536 153715680 -28699562 - MIR SINE MIR -56 206 52 21 0 0 0 chr6 153715759 153715780 -28699462 + AT_rich Low_complexity Low_complexity 1 21 0 2036 201 108 14 chr6 153715861 153716288 -28698954 - MLT1C LTR MaLR 0 467 1 308 140 20 0 chr6 153716407 153716457 -28698785 - LTR54B LTR ERV1 -447 51 1 439 267 130 0 chr6 153716526 153716672 -28698570 - MIR SINE MIR -13 249 85 26 0 0 0 chr6 153717269 153717295 -28697947 + AT_rich Low_complexity Low_complexity 1 26 0 365 288 151 14 chr6 153717397 153717543 -28697699 - MIR SINE MIR -95 167 2 442 344 91 0 chr6 153717735 153717921 -28697321 + MIR SINE MIR 47 249 -13 249 130 22 0 chr6 153717947 153717993 -28697249 - L1ME LINE L1 -361 5805 5759 1006 178 144 14 chr6 153717995 153718399 -28696843 + LTR54B LTR ERV1 1 510 0 1125 235 65 0 chr6 153718399 153718659 -28696583 - L1ME LINE L1 -411 5755 5479 189 107 0 0 chr6 153718659 153718687 -28696555 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 4520 149 35 65 chr6 153718693 153718918 -28696324 - L1MB2 LINE L1 -3 6168 5938 243 0 0 0 chr6 153718918 153718945 -28696297 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2157 106 3 0 chr6 153718945 153719228 -28696014 - AluSx SINE Alu -28 284 1 4520 149 35 65 chr6 153719228 153720020 -28695222 - L1MB2 LINE L1 -231 5940 5185 189 0 0 0 chr6 153720020 153720041 -28695201 + (TG)n Simple_repeat Simple_repeat 2 22 0 862 203 6 0 chr6 153720041 153720204 -28695038 - FRAM SINE Alu -12 164 1 1069 186 25 45 chr6 153720204 153720446 -28694796 - L1MB2 LINE L1 -956 5190 4954 1036 184 0 0 chr6 153720447 153720610 -28694632 - FRAM SINE Alu -13 163 1 2906 219 9 18 chr6 153720628 153721291 -28693951 - L1MB2 LINE L1 -1980 4166 3510 2070 151 7 0 chr6 153721308 153721613 -28693629 - AluSx SINE Alu -5 307 1 180 0 0 0 chr6 153721617 153721637 -28693605 + (T)n Simple_repeat Simple_repeat 1 20 0 1490 171 19 81 chr6 153722389 153722560 -28692682 - L1MB2 LINE L1 -2634 3512 3332 1558 233 15 32 chr6 153722560 153722963 -28692279 - MSTD LTR MaLR 0 396 1 1490 171 19 81 chr6 153722963 153723015 -28692227 - L1MB2 LINE L1 -2814 3332 3278 2431 74 0 16 chr6 153723015 153723325 -28691917 + AluY SINE Alu 1 305 -6 1490 171 19 81 chr6 153723325 153723521 -28691721 - L1MB2 LINE L1 -2868 3278 3118 1865 166 0 7 chr6 153723548 153723849 -28691393 - AluJb SINE Alu -13 299 1 320 329 82 41 chr6 153724699 153724845 -28690397 - L2 LINE L2 -5 3267 3116 1755 174 13 10 chr6 153725918 153726229 -28689013 + AluJb SINE Alu 1 312 0 246 32 0 0 chr6 153726283 153726314 -28688928 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1534 148 71 57 chr6 153726331 153726454 -28688788 + AluJo SINE Alu 6 126 -186 1572 105 9 0 chr6 153726454 153726664 -28688578 + AluSg/x SINE Alu 91 302 -10 1534 148 71 57 chr6 153726664 153726837 -28688405 + AluJo SINE Alu 126 306 -6 205 270 48 0 chr6 153726902 153726965 -28688277 + G-rich Low_complexity Low_complexity 3 68 0 450 299 44 7 chr6 153727234 153727371 -28687871 - MIR SINE MIR -26 236 95 206 350 34 34 chr6 153727477 153727594 -28687648 + MIR3 SINE MIR 2 118 -90 1966 171 10 39 chr6 153727594 153727861 -28687381 - MLT1A2 LTR MaLR 0 374 120 2705 98 50 0 chr6 153727861 153728220 -28687022 + MER51B LTR ERV1 1 377 0 1966 171 10 39 chr6 153728220 153728337 -28686905 - MLT1A2 LTR MaLR -254 120 1 194 226 177 0 chr6 153728344 153728406 -28686836 + MIR SINE MIR 120 192 -70 318 258 237 26 chr6 153728514 153728704 -28686538 - MIR SINE MIR -12 250 21 205 88 29 0 chr6 153730533 153730567 -28684675 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr6 153730650 153730671 -28684571 + AT_rich Low_complexity Low_complexity 1 21 0 450 326 7 20 chr6 153731181 153731328 -28683914 - MIR3 SINE MIR -6 202 58 553 167 0 0 chr6 153731444 153731540 -28683702 - L1MB3 LINE L1 -3 6180 6085 437 278 40 49 chr6 153731540 153731752 -28683490 - L1MEc LINE L1 -4142 2254 2043 237 273 0 0 chr6 153731752 153731807 -28683435 + (TA)n Simple_repeat Simple_repeat 1 55 0 1057 113 7 0 chr6 153731911 153732061 -28683181 - L1PB1 LINE L1 -1 6150 6000 2146 119 0 3 chr6 153732133 153732427 -28682815 + AluSg SINE Alu 1 293 -17 200 143 63 79 chr6 153732490 153732553 -28682689 - L2 LINE L2 -85 3228 3167 215 355 121 30 chr6 153732864 153733112 -28682130 - L2 LINE L2 -540 2774 2550 2289 85 3 0 chr6 153733112 153733405 -28681837 + AluY SINE Alu 2 295 -16 215 355 121 30 chr6 153733405 153733587 -28681655 - L2 LINE L2 -764 2550 2305 429 205 23 46 chr6 153734183 153734398 -28680844 - ORSL DNA AcHobo 0 275 1 1785 263 86 45 chr6 153734496 153734508 -28680734 - HAL1 LINE L1 -4 2503 2493 291 71 0 0 chr6 153734508 153734550 -28680692 + (TA)n Simple_repeat Simple_repeat 2 43 0 2412 81 3 25 chr6 153734555 153734875 -28680367 - AluSp SINE Alu 0 313 1 1785 263 86 45 chr6 153734875 153735673 -28679569 - HAL1 LINE L1 -17 2490 1646 2273 97 0 3 chr6 153735673 153735973 -28679269 - AluY SINE Alu -12 299 1 1785 263 86 45 chr6 153735973 153736032 -28679210 - HAL1 LINE L1 -861 1646 1591 2309 104 3 3 chr6 153736034 153736369 -28678873 + L1PA11 LINE L1 4681 5015 -1131 1537 78 23 37 chr6 153736370 153736587 -28678655 + AluSx SINE Alu 1 214 -98 3381 77 7 14 chr6 153736587 153737026 -28678216 + L1PA11 LINE L1 5738 6173 -1 2206 241 107 109 chr6 153737039 153737227 -28678015 - HAL1 LINE L1 -905 1602 1415 1838 204 8 22 chr6 153737227 153737595 -28677647 - MLT1A1 LTR MaLR 0 365 3 2206 241 107 109 chr6 153737595 153737982 -28677260 - HAL1 LINE L1 -1092 1415 1029 360 0 0 0 chr6 153737982 153738022 -28677220 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2206 241 107 109 chr6 153738022 153738039 -28677203 - HAL1 LINE L1 -1478 1029 1013 1772 174 7 7 chr6 153738039 153738333 -28676909 + AluJb SINE Alu 1 294 -18 2276 95 3 19 chr6 153738338 153738655 -28676587 + AluSx SINE Alu 1 312 0 2802 88 6 3 chr6 153738665 153739019 -28676223 - THE1A LTR MaLR 0 355 1 486 185 141 0 chr6 153739019 153739111 -28676131 - FLAM_A SINE Alu -32 110 6 2206 241 107 109 chr6 153739111 153740013 -28675229 - HAL1 LINE L1 -1505 1002 1 1113 162 29 5 chr6 153740060 153740264 -28674978 + AluJb SINE Alu 88 296 -16 1380 127 16 2 chr6 153740272 153740518 -28674724 + AluJb SINE Alu 1 300 -12 2145 148 45 57 chr6 153740634 153740868 -28674374 - MSTB1 LTR MaLR -12 420 192 2087 96 4 0 chr6 153740868 153741140 -28674102 - AluSp SINE Alu -20 293 21 2145 148 45 57 chr6 153741140 153741330 -28673912 - MSTB1 LTR MaLR -240 192 1 2491 87 0 0 chr6 153741469 153741779 -28673463 + AluY SINE Alu 1 310 -1 1752 135 0 49 chr6 153742828 153743132 -28672110 - AluJb SINE Alu -23 289 1 439 331 27 63 chr6 153744163 153744498 -28670744 - MLT1K LTR MaLR -261 327 5 394 335 87 69 chr6 153744505 153744780 -28670462 + L2 LINE L2 2993 3272 0 365 269 157 0 chr6 153744854 153744988 -28670254 - MIR SINE MIR -33 229 75 2617 55 0 0 chr6 153745240 153745551 -28669691 + AluY SINE Alu 1 311 0 389 239 102 42 chr6 153746177 153746344 -28668898 + MER5A DNA MER1_type 1 177 -12 252 227 0 27 chr6 153746802 153746877 -28668365 + (TA)n Simple_repeat Simple_repeat 1 73 0 266 73 24 0 chr6 153747314 153747355 -28667887 + (TCCC)n Simple_repeat Simple_repeat 2 43 0 2075 137 10 0 chr6 153747359 153747665 -28667577 - AluSx SINE Alu -3 309 1 362 65 0 0 chr6 153748144 153748190 -28667052 + AluY SINE Alu 1 46 -254 1522 65 15 0 chr6 153748190 153748391 -28666851 + AluY SINE Alu 106 309 -2 317 327 101 9 chr6 153748411 153748628 -28666614 + L2 LINE L2 3077 3313 0 22 0 0 0 chr6 153751709 153751731 -28663511 + GC_rich Low_complexity Low_complexity 1 22 0 1728 114 0 20 chr6 153753442 153753688 -28661554 - AluSx SINE Alu -10 302 62 686 156 0 0 chr6 153753688 153753784 -28661458 - AluS SINE Alu -216 97 2 411 288 92 58 chr6 153753784 153754110 -28661132 + L2 LINE L2 2287 2623 -691 198 0 0 0 chr6 153754142 153754164 -28661078 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 838 140 0 0 chr6 153754188 153754302 -28660940 - AluJb SINE Alu -193 119 6 2212 110 0 17 chr6 153754339 153754639 -28660603 - AluSq SINE Alu -18 295 1 215 301 0 0 chr6 153754687 153754760 -28660482 + (TA)n Simple_repeat Simple_repeat 2 74 0 1143 255 124 23 chr6 153754769 153755251 -28659991 - L1MC4 LINE L1 -157 7885 7355 299 221 48 29 chr6 153755272 153755376 -28659866 - L1MC4 LINE L1 -3 8039 7934 583 316 41 94 chr6 153755376 153755438 -28659804 + L2 LINE L2 2615 2679 -593 2378 84 0 37 chr6 153755438 153755759 -28659483 - AluSg SINE Alu -1 309 1 583 316 41 94 chr6 153755759 153756350 -28658892 + L2 LINE L2 2679 3268 -4 427 282 55 3 chr6 153757191 153757333 -28657909 + MER5B DNA MER1_type 2 174 -15 22 35 0 0 chr6 153758098 153758127 -28657115 + AT_rich Low_complexity Low_complexity 1 29 0 392 277 94 15 chr6 153758139 153758341 -28656901 + L1ME4a LINE L1 5555 5772 -349 245 29 0 29 chr6 153758571 153758606 -28656636 + (TG)n Simple_repeat Simple_repeat 1 34 0 263 198 160 9 chr6 153758695 153758801 -28656441 + L1ME4a LINE L1 5981 6102 -19 34 0 0 0 chr6 153759471 153759505 -28655737 + AT_rich Low_complexity Low_complexity 1 34 0 243 242 16 0 chr6 153760337 153760399 -28654843 - L3 LINE CR1 -87 1490 1428 602 283 165 27 chr6 153760535 153760810 -28654432 + L2 LINE L2 2881 3223 -90 2355 136 15 0 chr6 153760810 153761142 -28654100 + MER1B DNA MER1_type 1 337 0 602 283 165 27 chr6 153761142 153761241 -28654001 + L2 LINE L2 3223 3307 -6 346 301 0 0 chr6 153761243 153761326 -28653916 - MIR SINE MIR -170 92 10 26 50 0 0 chr6 153761950 153761990 -28653252 + AT_rich Low_complexity Low_complexity 1 40 0 236 269 15 0 chr6 153763870 153763937 -28651305 - MER5A DNA MER1_type -70 119 52 191 160 20 40 chr6 153763900 153763950 -28651292 + MER5A DNA MER1_type 113 161 -28 * 2048 135 0 20 chr6 153764772 153765075 -28650167 - AluSx SINE Alu -15 297 1 24 53 0 0 chr6 153765628 153765666 -28649576 + AT_rich Low_complexity Low_complexity 1 38 0 1930 149 33 0 chr6 153766218 153766519 -28648723 - AluSx SINE Alu -1 311 1 2303 93 3 0 chr6 153766914 153767204 -28648038 + AluSx SINE Alu 1 291 -21 343 311 131 56 chr6 153767258 153767563 -28647679 - L2 LINE L2 -2 3270 2943 250 309 107 40 chr6 153767590 153767888 -28647354 - L2 LINE L2 -447 2867 2550 293 298 139 19 chr6 153769200 153769358 -28645884 - L2 LINE L2 -177 3095 2919 41 21 0 0 chr6 153769479 153769527 -28645715 + AT_rich Low_complexity Low_complexity 1 48 0 1502 129 0 14 chr6 153769620 153769837 -28645405 - AluSq SINE Alu -16 297 84 564 266 148 53 chr6 153770193 153770591 -28644651 - LTR16A LTR ERVL 0 457 22 1920 139 3 30 chr6 153771459 153771762 -28643480 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr6 153772503 153772524 -28642718 + AT_rich Low_complexity Low_complexity 1 21 0 776 278 174 10 chr6 153772632 153773039 -28642203 + L2 LINE L2 396 869 -2445 1469 139 30 13 chr6 153773048 153773278 -28641964 - AluJb SINE Alu -78 234 1 3630 233 173 13 chr6 153773278 153774547 -28640695 + L2 LINE L2 1383 2853 -461 512 230 268 24 chr6 153774629 153774842 -28640400 + L2 LINE L2 3031 3295 -18 669 175 0 44 chr6 153774890 153774942 -28640300 + AluJb SINE Alu 87 140 -172 2305 91 7 0 chr6 153774942 153775239 -28640003 + AluSp SINE Alu 3 301 -12 669 175 0 44 chr6 153775239 153775300 -28639942 + AluJb SINE Alu 140 195 -117 930 149 7 0 chr6 153775318 153775494 -28639748 + AluSg/x SINE Alu 137 313 0 477 308 6 41 chr6 153776150 153776322 -28638920 + MIR3 SINE MIR 19 184 -24 593 247 108 6 chr6 153776697 153776829 -28638413 + MIR SINE MIR 69 223 -39 2565 48 3 0 chr6 153776829 153777124 -28638118 + AluY SINE Alu 1 296 -15 593 247 108 6 chr6 153777124 153777157 -28638085 + MIR SINE MIR 223 251 -11 753 263 61 68 chr6 153777586 153777986 -28637256 - MLT1J LTR MaLR 0 476 105 368 344 15 8 chr6 153778422 153778553 -28636689 - MER115 DNA AcHobo -560 133 2 1493 200 47 22 chr6 153779209 153779529 -28635713 - MER46C DNA MER2_type -10 328 1 187 259 129 60 chr6 153779564 153779630 -28635612 - MIR SINE MIR -53 209 149 222 105 0 0 chr6 153779630 153779668 -28635574 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 187 259 129 60 chr6 153779668 153779717 -28635525 - MIR SINE MIR -113 149 86 825 137 15 0 chr6 153780754 153780885 -28634357 + FLAM_C SINE Alu 1 133 -10 252 330 30 10 chr6 153781389 153781489 -28633753 - MIR SINE MIR -35 227 126 2159 112 30 0 chr6 153782086 153782382 -28632860 - AluSq SINE Alu -8 305 1 26 0 0 0 chr6 153782448 153782474 -28632768 + AT_rich Low_complexity Low_complexity 1 26 0 1067 176 0 0 chr6 153782970 153783146 -28632096 - AluSg/x SINE Alu -2 308 133 180 0 0 0 chr6 153783146 153783166 -28632076 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2191 102 0 0 chr6 153783166 153783449 -28631793 - AluSx SINE Alu -29 283 1 1842 172 7 0 chr6 153783474 153783777 -28631465 + AluJb SINE Alu 1 305 -7 27 49 0 0 chr6 153783782 153783823 -28631419 + AT_rich Low_complexity Low_complexity 1 41 0 1484 163 82 0 chr6 153784286 153784531 -28630711 - AluJb SINE Alu -45 267 3 2219 115 0 0 chr6 153784542 153784837 -28630405 - AluSg SINE Alu -15 295 1 180 111 0 0 chr6 153784976 153785003 -28630239 + (TTA)n Simple_repeat Simple_repeat 1 27 0 238 235 25 49 chr6 153785888 153785969 -28629273 - L1MC4 LINE L1 -1350 6692 6614 756 234 43 21 chr6 153785981 153786147 -28629095 - MIR SINE MIR -59 203 42 2455 81 0 7 chr6 153786147 153786455 -28628787 - AluSg SINE Alu -4 306 1 1977 118 31 0 chr6 153786455 153786743 -28628499 - AluSq SINE Alu -16 297 1 756 234 43 21 chr6 153786743 153786763 -28628479 - MIR SINE MIR -219 43 12 2608 36 0 16 chr6 153787342 153787645 -28627597 + AluY SINE Alu 1 298 -13 28 0 0 0 chr6 153788902 153788930 -28626312 + AT_rich Low_complexity Low_complexity 1 28 0 2582 160 2 15 chr6 153789849 153790250 -28624992 + MSTD LTR MaLR 1 396 0 236 330 116 6 chr6 153790325 153790498 -28624744 + HAL1 LINE L1 742 933 -1574 573 184 35 7 chr6 153790508 153790649 -28624593 + HAL1 LINE L1 975 1119 -1388 263 261 52 9 chr6 153790672 153790787 -28624455 + HAL1 LINE L1 2270 2389 -118 206 221 26 91 chr6 153791456 153791533 -28623709 - L3 LINE CR1 -7 1570 1499 242 260 0 0 chr6 153791862 153791912 -28623330 + G-rich Low_complexity Low_complexity 1 50 0 2177 79 4 4 chr6 153792357 153792671 -28622571 + AluSq SINE Alu 11 324 0 690 175 62 17 chr6 153792892 153793069 -28622173 - MER34B LTR ERV1 -80 485 301 25 83 0 0 chr6 153793211 153793271 -28621971 + AT_rich Low_complexity Low_complexity 1 60 0 1346 219 123 20 chr6 153793440 153793478 -28621764 - Charlie4a DNA MER1_type -1477 484 451 2066 130 0 3 chr6 153793478 153793770 -28621472 - AluSx SINE Alu -21 291 1 2365 91 0 3 chr6 153793770 153794066 -28621176 - AluSc SINE Alu -14 295 1 1346 219 123 20 chr6 153794066 153794433 -28620809 - Charlie4a DNA MER1_type -1509 452 36 254 159 159 43 chr6 153795992 153796061 -28619181 + L2 LINE L2 3196 3272 0 484 280 87 93 chr6 153796636 153797014 -28618228 + L2 LINE L2 2854 3229 -43 267 31 0 0 chr6 153797038 153797070 -28618172 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2009 121 0 24 chr6 153797590 153797926 -28617316 - AluSx SINE Alu 0 329 1 353 200 0 14 chr6 153798583 153798653 -28616589 - L2 LINE L2 0 3313 3245 22 35 0 0 chr6 153801404 153801433 -28613809 + AT_rich Low_complexity Low_complexity 1 29 0 733 60 17 0 chr6 153801790 153801906 -28613336 + (CA)n Simple_repeat Simple_repeat 1 118 0 2163 116 0 0 chr6 153802293 153802600 -28612642 - AluSx SINE Alu 0 307 1 746 246 27 107 chr6 153803459 153803825 -28611417 + MER46C DNA MER2_type 1 337 -1 886 216 41 57 chr6 153804049 153804294 -28610948 + L1MC4a LINE L1 7567 7807 -1 2031 125 3 20 chr6 153804571 153804875 -28610367 + AluSx SINE Alu 1 299 -13 3294 163 22 12 chr6 153806785 153807020 -28608222 + L1MB8 LINE L1 5405 5636 -548 339 25 0 0 chr6 153807020 153807060 -28608182 + (CA)n Simple_repeat Simple_repeat 2 41 0 3294 163 22 12 chr6 153807060 153807413 -28607829 + L1MB8 LINE L1 5636 5999 -185 552 179 0 0 chr6 153807415 153807521 -28607721 + L1MB8 LINE L1 6064 6169 -9 297 248 20 45 chr6 153807593 153807707 -28607535 - MIR SINE MIR -56 152 73 1376 99 63 0 chr6 153807998 153808049 -28607193 + AluSq SINE Alu 72 118 -195 423 0 0 0 chr6 153808049 153808096 -28607146 + (CA)n Simple_repeat Simple_repeat 2 48 0 1376 99 63 0 chr6 153808096 153808235 -28607007 + AluSq SINE Alu 118 274 -39 180 0 0 0 chr6 153808776 153808796 -28606446 + (A)n Simple_repeat Simple_repeat 1 20 0 1734 186 7 0 chr6 153810078 153810363 -28604879 + AluJo SINE Alu 1 287 -25 2515 84 0 0 chr6 153810581 153810889 -28604353 + AluSx SINE Alu 1 308 -4 22 35 0 0 chr6 153811194 153811223 -28604019 + AT_rich Low_complexity Low_complexity 1 29 0 2113 109 3 10 chr6 153811224 153811517 -28603725 + AluSx SINE Alu 1 291 -21 484 53 26 0 chr6 153811536 153811612 -28603630 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 211 313 183 0 chr6 153811895 153812026 -28603216 - MER5B DNA MER1_type -4 174 20 380 270 48 16 chr6 153812046 153812172 -28603070 + L2 LINE L2 3143 3272 0 1959 157 3 10 chr6 153812519 153812831 -28602411 - AluJb SINE Alu -2 310 1 193 398 65 0 chr6 153812893 153813001 -28602241 - L2 LINE L2 0 3272 3158 2359 91 7 0 chr6 153813339 153813648 -28601594 + AluSp SINE Alu 1 311 -2 2473 50 3 0 chr6 153813695 153813993 -28601249 - AluY SINE Alu -12 299 1 189 352 0 28 chr6 153866558 153866629 -28548613 - MIR3 SINE MIR -35 173 105 944 130 0 14 chr6 153867119 153867257 -28547985 + AluY SINE Alu 1 136 -175 1419 305 119 56 chr6 153867359 153868274 -28546968 + L2 LINE L2 1863 2888 -425 2186 138 19 24 chr6 153868274 153868650 -28546592 + THE1C LTR MaLR 1 374 -1 1419 305 119 56 chr6 153868650 153869096 -28546146 + L2 LINE L2 2888 3304 -9 23 0 0 0 chr6 153870001 153870024 -28545218 + AT_rich Low_complexity Low_complexity 1 23 0 5691 94 20 7 chr6 153870115 153870953 -28544289 + L1PA10 LINE L1 5335 6168 0 237 319 21 57 chr6 153871403 153871544 -28543698 - MIR3 SINE MIR -62 146 11 218 359 0 0 chr6 153871695 153871773 -28543469 + (TA)n Simple_repeat Simple_repeat 1 78 0 226 122 49 0 chr6 153871775 153871816 -28543426 + L1MC4 LINE L1 6661 6703 -1339 236 65 0 0 chr6 153871867 153871913 -28543329 + LTR66 LTR ERVL 394 439 -171 294 336 14 21 chr6 153871913 153872053 -28543189 + (CATA)n Simple_repeat Simple_repeat 4 142 0 682 241 93 0 chr6 153872667 153872829 -28542413 + MER45A DNA AcHobo 2 178 0 1304 270 270 23 chr6 153873076 153873854 -28541388 + L2 LINE L2 2008 2977 -337 251 277 15 0 chr6 153873860 153873925 -28541317 + CT-rich Low_complexity Low_complexity 2 67 0 23 0 0 0 chr6 153874610 153874633 -28540609 + AT_rich Low_complexity Low_complexity 1 23 0 650 298 65 18 chr6 153875032 153875383 -28539859 - L1ME LINE L1 -298 5823 5458 2357 97 0 3 chr6 153875821 153876132 -28539110 - AluSg SINE Alu 0 310 1 405 171 0 14 chr6 153876629 153876699 -28538543 - AluS SINE Alu -239 74 6 1793 195 0 0 chr6 153877113 153877400 -28537842 - AluJo SINE Alu -23 289 3 35 24 0 0 chr6 153878766 153878808 -28536434 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 153878876 153878897 -28536345 + AT_rich Low_complexity Low_complexity 1 21 0 259 258 21 0 chr6 153879531 153879628 -28535614 + (TA)n Simple_repeat Simple_repeat 2 100 0 2350 72 7 10 chr6 153879710 153880014 -28535228 + AluY SINE Alu 1 303 -8 1891 166 0 3 chr6 153881081 153881394 -28533848 + AluSx SINE Alu 1 312 0 780 268 43 17 chr6 153881801 153882036 -28533206 + L2 LINE L2 2224 2464 -850 254 277 59 10 chr6 153882177 153882278 -28532964 + L1MC4 LINE L1 7924 8029 -13 1144 305 15 6 chr6 153882283 153882624 -28532618 + L2 LINE L2 2544 2887 -427 201 94 0 0 chr6 153882963 153882995 -28532247 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 454 325 111 42 chr6 153883002 153883585 -28531657 - L2 LINE L2 -20 3252 2626 224 313 105 45 chr6 153883643 153884091 -28531151 - L2 LINE L2 -1025 2289 1815 2094 138 0 25 chr6 153885244 153885564 -28529678 - AluSx SINE Alu 0 312 1 249 270 130 70 chr6 153885740 153885855 -28529387 + L2 LINE L2 3137 3258 -14 397 247 149 38 chr6 153886266 153886520 -28528722 - MLT1H LTR MaLR 0 555 249 642 266 26 0 chr6 153886524 153886678 -28528564 + MER3 DNA MER1_type 52 209 0 478 273 77 16 chr6 153886678 153886858 -28528384 - MLT1H LTR MaLR -358 191 1 590 308 88 20 chr6 153886865 153887115 -28528127 - L2 LINE L2 -200 3113 2847 1632 136 109 18 chr6 153887308 153887639 -28527603 + MER46B DNA MER2_type 1 236 0 1817 159 11 0 chr6 153887775 153888058 -28527184 + AluJo SINE Alu 1 286 -26 24 67 0 0 chr6 153888279 153888324 -28526918 + AT_rich Low_complexity Low_complexity 1 45 0 497 254 181 15 chr6 153889456 153889661 -28525581 + L2 LINE L2 2707 2945 -369 2135 115 10 3 chr6 153889681 153889986 -28525256 - AluSp SINE Alu -6 307 1 1504 160 46 21 chr6 153890812 153891094 -28524148 - AluJo SINE Alu -23 289 1 1368 113 10 15 chr6 153891403 153891607 -28523635 + AluSg/x SINE Alu 96 298 -14 5186 130 62 5 chr6 153892427 153893281 -28521961 - MER4D LTR ERV1 0 903 1 13277 132 33 14 chr6 153894151 153896356 -28518886 + Tigger1 DNA MER2_type 1 2246 -172 2117 158 26 40 chr6 153896356 153896482 -28518760 - MER6 DNA MER2_type 0 865 739 2080 115 0 32 chr6 153896482 153896795 -28518447 - AluSx SINE Alu -9 303 1 2117 158 26 40 chr6 153896795 153897093 -28518149 - MER6 DNA MER2_type -126 739 447 538 156 8 123 chr6 153897094 153897216 -28518026 - MER6 DNA MER2_type -757 108 1 * 864 136 99 12 chr6 153897216 153897376 -28517866 + Tigger1 DNA MER2_type 2245 2418 0 405 278 173 6 chr6 153897638 153897811 -28517431 - L1ME LINE L1 -460 5661 5460 2168 113 3 3 chr6 153899055 153899365 -28515877 + AluSq SINE Alu 1 310 -3 403 233 129 0 chr6 153901723 153901839 -28513403 - MER103 DNA DNA -17 149 19 427 306 27 0 chr6 153902276 153902387 -28512855 - MER81 DNA DNA 0 114 1 2034 160 40 9 chr6 153902445 153902795 -28512447 + MLT2D LTR ERVL 1 361 -53 800 272 57 50 chr6 153902796 153903097 -28512145 + L1MA7 LINE L1 1224 1526 -5970 651 259 49 8 chr6 153903266 153903532 -28511710 + L1MA7 LINE L1 3354 3630 -3935 10740 196 34 18 chr6 153903534 153905018 -28510224 + L1MA7 LINE L1 3574 5033 -2677 2187 113 0 3 chr6 153905018 153905303 -28509939 + AluSx SINE Alu 3 288 -24 228 35 0 0 chr6 153905303 153905332 -28509910 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 10740 196 34 18 chr6 153905339 153907941 -28507301 + L1MA7 LINE L1 5033 7710 0 1043 218 80 19 chr6 153907936 153908198 -28507044 + L1ME1 LINE L1 5884 6161 -5 * 26 0 0 0 chr6 153909583 153909609 -28505633 + AT_rich Low_complexity Low_complexity 1 26 0 789 300 82 61 chr6 153909893 153910485 -28504757 + L2 LINE L2 2396 3001 -312 225 209 75 15 chr6 153910954 153911021 -28504221 - L1MB5 LINE L1 0 6174 6104 332 205 0 64 chr6 153912462 153912540 -28502702 + AluS SINE Alu 227 299 -2 1947 137 0 0 chr6 153912678 153912949 -28502293 - AluSx SINE Alu -41 271 1 249 200 11 74 chr6 153913184 153913279 -28501963 + L1MC4 LINE L1 7943 8031 -11 24 77 0 0 chr6 153914011 153914063 -28501179 + AT_rich Low_complexity Low_complexity 1 52 0 240 86 0 0 chr6 153914524 153914559 -28500683 + (TGG)n Simple_repeat Simple_repeat 1 35 0 451 327 73 29 chr6 153914972 153915247 -28499995 - L2 LINE L2 -469 2845 2559 22 0 0 0 chr6 153915626 153915648 -28499594 + AT_rich Low_complexity Low_complexity 1 22 0 871 189 44 36 chr6 153915991 153916239 -28499003 - L1MB8 LINE L1 -5 6173 5924 227 79 26 0 chr6 153917106 153917144 -28498098 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 229 283 30 20 chr6 153921246 153921345 -28493897 - Charlie7 DNA MER1_type -7 2605 2506 265 317 12 0 chr6 153924052 153924134 -28491108 - MIR3 SINE MIR -6 202 120 1693 118 15 33 chr6 153924167 153924438 -28490804 - AluJo SINE Alu -11 301 36 22 56 0 0 chr6 153924831 153924867 -28490375 + AT_rich Low_complexity Low_complexity 1 36 0 205 304 0 18 chr6 153924867 153924923 -28490319 - L2 LINE L2 -5 3267 3213 643 262 44 62 chr6 153924998 153925156 -28490086 + MIR SINE MIR 12 166 -96 450 53 0 0 chr6 153925156 153925213 -28490029 + (CA)n Simple_repeat Simple_repeat 2 58 0 643 262 44 62 chr6 153925213 153925279 -28489963 + MIR SINE MIR 166 232 -30 520 225 85 121 chr6 153926378 153926688 -28488554 - L1ME4a LINE L1 -224 5897 5604 2191 105 7 3 chr6 153926688 153926983 -28488259 - AluSc SINE Alu -13 296 1 520 225 85 121 chr6 153926983 153927095 -28488147 - L1ME4a LINE L1 -517 5604 5490 1550 157 269 76 chr6 153927469 153927993 -28487249 - MER51A LTR ERV1 -9 625 1 430 320 82 15 chr6 153928137 153928343 -28486899 + MARNA DNA Mariner 313 532 -54 209 359 77 0 chr6 153928458 153928536 -28486706 - MIR3 SINE MIR -1 207 124 861 186 56 48 chr6 153928919 153929150 -28486092 - L1MB7 LINE L1 0 6184 5952 238 309 119 42 chr6 153929376 153929544 -28485698 + MIR SINE MIR 3 183 -79 324 229 15 61 chr6 153929769 153929900 -28485342 + CT-rich Low_complexity Low_complexity 3 127 0 1738 139 68 0 chr6 153930392 153930672 -28484570 - L1MB5 LINE L1 -27 6147 5849 499 343 59 19 chr6 153930680 153930993 -28484249 + L2 LINE L2 1195 1587 -1727 1055 287 177 25 chr6 153931180 153931859 -28483383 + L2 LINE L2 2424 3234 -79 2071 86 0 0 chr6 153931859 153932115 -28483127 + AluSq SINE Alu 1 256 -57 1055 287 177 25 chr6 153932115 153932204 -28483038 + L2 LINE L2 3234 3308 -5 238 346 25 25 chr6 153932271 153932433 -28482809 - L1ME LINE L1 -504 5658 5497 1594 176 49 37 chr6 153932437 153932641 -28482601 - Charlie1b DNA MER1_type -2250 511 311 1762 166 0 27 chr6 153932641 153932967 -28482275 + AluJo SINE Alu 2 319 0 1594 176 49 37 chr6 153932967 153933170 -28482072 - Charlie1b DNA MER1_type -2450 311 98 327 244 164 51 chr6 153933383 153933657 -28481585 - L1ME LINE L1 -878 5268 4964 237 254 7 70 chr6 153933883 153934025 -28481217 - L1ME LINE L1 -1441 4705 4573 401 277 123 28 chr6 153934135 153934420 -28480822 + L1ME4a LINE L1 5573 5884 -237 21 57 0 0 chr6 153934644 153934679 -28480563 + AT_rich Low_complexity Low_complexity 1 35 0 507 267 22 15 chr6 153935542 153935677 -28479565 - MIR SINE MIR -14 248 113 346 313 74 13 chr6 153936809 153936964 -28478278 - MIR SINE MIR -76 132 4 318 26 0 0 chr6 153937260 153937299 -28477943 + (CA)n Simple_repeat Simple_repeat 2 40 0 259 103 0 0 chr6 153937608 153937647 -28477595 - L2 LINE L2 -4 3309 3271 2276 102 3 0 chr6 153939166 153939461 -28475781 - AluSq SINE Alu -17 296 1 2087 93 20 23 chr6 153939758 153940058 -28475184 + AluSg SINE Alu 1 299 -11 297 263 91 0 chr6 153941231 153941330 -28473912 - L1ME3A LINE L1 -58 6112 6005 1593 147 173 52 chr6 153941334 153941559 -28473683 - MSTA LTR MaLR 0 428 231 1528 171 8 0 chr6 153941559 153941817 -28473425 - AluSx SINE Alu -14 298 39 1593 147 173 52 chr6 153941817 153941973 -28473269 - MSTA LTR MaLR -197 231 1 23 0 0 0 chr6 153943646 153943669 -28471573 + AT_rich Low_complexity Low_complexity 1 23 0 1125 27 7 34 chr6 153944625 153944774 -28470468 + L1PA4 LINE L1 6011 6155 0 487 127 0 0 chr6 153944779 153944850 -28470392 - MER39 LTR ERV1 -370 337 267 * 820 123 56 92 chr6 153944833 153945028 -28470214 - MER21A LTR ERV1 -733 198 11 581 108 271 16 chr6 153945772 153945901 -28469341 - MER106B DNA MER1_type 0 1059 898 230 250 0 19 chr6 153945977 153946029 -28469213 - MIR SINE MIR -84 124 74 773 240 49 20 chr6 153946169 153946373 -28468869 - MIR SINE MIR -34 228 19 576 245 37 29 chr6 153946814 153947089 -28468153 + MER46C DNA MER2_type 2 321 -17 378 107 0 0 chr6 153947330 153947386 -28467856 + (TA)n Simple_repeat Simple_repeat 1 56 0 472 312 110 39 chr6 153947718 153948362 -28466880 - L2 LINE L2 -1415 1899 1210 321 341 171 0 chr6 153948517 153948646 -28466596 - MER91A DNA MER1_type -45 151 1 341 314 114 52 chr6 153948700 153948849 -28466393 - L2 LINE L2 -2786 528 390 1772 163 18 0 chr6 153948849 153949131 -28466111 + AluJb SINE Alu 9 295 -17 341 314 114 52 chr6 153949131 153949401 -28465841 - L2 LINE L2 -2924 390 83 272 329 25 0 chr6 153950794 153950873 -28464369 - MIR SINE MIR -117 145 65 27 62 0 0 chr6 153951154 153951202 -28464040 + AT_rich Low_complexity Low_complexity 1 48 0 223 319 36 87 chr6 153951571 153951709 -28463533 - L2 LINE L2 -5 3267 3137 1485 211 61 22 chr6 153951726 153952087 -28463155 + MLT1D LTR MaLR 129 503 -2 21 0 0 0 chr6 153953296 153953317 -28461925 + AT_rich Low_complexity Low_complexity 1 21 0 692 296 186 26 chr6 153953350 153953964 -28461278 - HAL1 LINE L1 -48 2459 1748 237 113 16 65 chr6 153953969 153954031 -28461211 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 410 303 48 0 chr6 153954164 153954329 -28460913 - HAL1 LINE L1 -677 1830 1658 6667 44 39 10 chr6 153954348 153955216 -28460026 - L1PA8 LINE L1 -1 6171 5279 927 106 7 50 chr6 153955246 153955387 -28459855 + AluSq/x SINE Alu 1 135 -177 2011 138 0 7 chr6 153955388 153955671 -28459571 + AluSx SINE Alu 2 311 0 241 35 0 0 chr6 153955671 153955700 -28459542 + (TAAAA)n Simple_repeat Simple_repeat 1 90 0 2664 180 43 39 chr6 153956272 153956548 -28458694 - L1ME1 LINE L1 -231 5935 5662 2060 141 7 3 chr6 153956548 153956853 -28458389 - AluSx SINE Alu -2 310 5 2664 180 43 39 chr6 153956853 153957197 -28458045 - L1ME1 LINE L1 -504 5662 5312 409 180 67 47 chr6 153957206 153957356 -28457886 - HAL1b LINE L1 -5 1343 1191 210 118 0 0 chr6 153957356 153957390 -28457852 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 1528 157 114 7 chr6 153957460 153957766 -28457476 + MER44D DNA MER2_type 1 609 0 2240 180 31 13 chr6 153957780 153958258 -28456984 - L1MB7 LINE L1 -70 6114 5628 566 148 0 0 chr6 153959899 153959987 -28455255 + AluS SINE Alu 2 89 -224 3205 175 15 36 chr6 153960108 153960208 -28455034 - L1MB7 LINE L1 -30 6154 6053 2481 79 0 0 chr6 153960208 153960512 -28454730 - AluSg SINE Alu -6 304 1 3205 175 15 36 chr6 153960512 153961018 -28454224 - L1MB7 LINE L1 -131 6053 5562 2567 98 22 6 chr6 153961018 153961376 -28453866 + THE1B LTR MaLR 1 364 0 3205 175 15 36 chr6 153961376 153961455 -28453787 - L1MB7 LINE L1 -622 5562 5483 560 276 50 81 chr6 153962450 153962808 -28452434 - L2 LINE L2 -32 3281 2935 236 196 0 20 chr6 153963843 153963894 -28451348 - L2 LINE L2 0 3313 3264 720 208 0 21 chr6 153966239 153966383 -28448859 + MIR SINE MIR 84 224 -38 253 351 129 30 chr6 153966527 153966729 -28448513 + L2 LINE L2 2887 3108 -164 380 262 9 19 chr6 153967044 153967151 -28448091 + CT-rich Low_complexity Low_complexity 3 108 0 2072 119 19 13 chr6 153967373 153967683 -28447559 - AluSx SINE Alu 0 312 1 444 294 112 7 chr6 153968297 153968440 -28446802 + MIR3 SINE MIR 8 165 -43 329 322 75 80 chr6 153969293 153969945 -28445297 - L2 LINE L2 -384 2930 2282 1838 94 0 8 chr6 153971837 153972082 -28443160 - AluSc SINE Alu -14 295 53 237 216 0 0 chr6 153972118 153972169 -28443073 + Charlie8 DNA MER1_type 1378 1428 -989 2555 150 52 31 chr6 153972648 153972993 -28442249 - L1MB4 LINE L1 -8 6172 5811 2340 89 0 3 chr6 153972993 153973295 -28441947 - AluSg SINE Alu -9 301 1 2555 150 52 31 chr6 153973295 153973468 -28441774 - L1MB4 LINE L1 -369 5811 5643 2476 63 0 10 chr6 153975099 153975400 -28439842 + AluY SINE Alu 1 298 -13 2378 96 61 6 chr6 153975508 153975853 -28439389 - THE1B LTR MaLR 0 364 1 186 43 0 0 chr6 153976383 153976406 -28438836 + (GA)n Simple_repeat Simple_repeat 2 24 0 311 98 16 0 chr6 153976406 153976467 -28438775 + (TG)n Simple_repeat Simple_repeat 2 63 0 23 0 0 0 chr6 153977477 153977500 -28437742 + AT_rich Low_complexity Low_complexity 1 23 0 2347 99 3 0 chr6 153977913 153978216 -28437026 - AluSp SINE Alu -9 304 1 22 0 0 0 chr6 153978334 153978356 -28436886 + AT_rich Low_complexity Low_complexity 1 22 0 2440 62 0 10 chr6 153978423 153978727 -28436515 - AluY SINE Alu -10 301 1 1574 196 55 4 chr6 153979746 153980216 -28435026 - L1MB8 LINE L1 0 6178 5647 1675 186 0 26 chr6 153980335 153980647 -28434595 - AluJb SINE Alu -8 304 1 2063 151 3 0 chr6 153980701 153981035 -28434207 - AluSx SINE Alu 0 335 1 21 0 0 0 chr6 153981052 153981073 -28434169 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 153981129 153981155 -28434087 + AT_rich Low_complexity Low_complexity 1 26 0 2966 57 8 8 chr6 153981366 153981750 -28433492 + L1PA7 LINE L1 5768 6151 -3 1635 179 3 3 chr6 153982158 153982466 -28432776 - AluJo SINE Alu 0 308 1 39 84 0 0 chr6 153982554 153982649 -28432593 + AT_rich Low_complexity Low_complexity 1 95 0 22 56 0 0 chr6 153983069 153983105 -28432137 + AT_rich Low_complexity Low_complexity 1 36 0 1283 160 46 30 chr6 153984100 153984337 -28430905 + AluJo SINE Alu 42 282 -30 191 61 30 0 chr6 153984340 153984373 -28430869 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 272 326 210 15 chr6 153984415 153984954 -28430288 + L2 LINE L2 1885 2528 -786 243 79 0 0 chr6 153985316 153985354 -28429888 + (GA)n Simple_repeat Simple_repeat 1 38 0 207 304 88 40 chr6 153985509 153985634 -28429608 + L3 LINE CR1 1422 1552 -25 24 0 0 0 chr6 153985994 153986018 -28429224 + AT_rich Low_complexity Low_complexity 1 24 0 3748 100 54 22 chr6 153986318 153986907 -28428335 - MER4B LTR ERV1 -2 608 1 2283 92 10 0 chr6 153988782 153989077 -28426165 + AluSq SINE Alu 1 298 -15 468 293 102 48 chr6 153990012 153990432 -28424810 + MER65A LTR ERV1 1 443 -2 22 0 0 0 chr6 153990549 153990571 -28424671 + AT_rich Low_complexity Low_complexity 1 22 0 464 212 40 0 chr6 153992968 153993067 -28422175 - MER65A LTR ERV1 -342 103 1 305 339 35 35 chr6 153993226 153993397 -28421845 - MIR SINE MIR -16 246 76 800 202 98 16 chr6 153994620 153994813 -28420429 - MER3 DNA MER1_type 0 209 1 24 0 0 0 chr6 153995023 153995047 -28420195 + AT_rich Low_complexity Low_complexity 1 24 0 2678 95 3 16 chr6 153995212 153995581 -28419661 - THE1B LTR MaLR 0 364 1 283 318 11 0 chr6 153995727 153995815 -28419427 - L2 LINE L2 0 3313 3225 2200 100 0 0 chr6 153995896 153996201 -28419041 + AluSg SINE Alu 1 305 0 32 26 0 0 chr6 153996231 153996270 -28418972 + AT_rich Low_complexity Low_complexity 1 39 0 257 125 0 0 chr6 153996356 153996396 -28418846 - MADE1 DNA Mariner 0 80 41 24 85 0 0 chr6 153996403 153996462 -28418780 + AT_rich Low_complexity Low_complexity 1 59 0 192 348 96 17 chr6 153996660 153996775 -28418467 - MIR SINE MIR -66 142 19 252 217 14 0 chr6 153997017 153997086 -28418156 - L1M4 LINE L1 -897 5249 5180 1410 52 0 0 chr6 153997087 153997260 -28417982 - L1PB1 LINE L1 0 6151 5979 345 167 0 0 chr6 153997588 153997648 -28417594 - THE1B LTR MaLR -213 151 92 2397 86 0 3 chr6 153998571 153998873 -28416369 + AluY SINE Alu 1 301 -10 556 274 109 17 chr6 153998880 153999110 -28416132 - L1MC/D LINE L1 -1989 5819 5569 902 195 0 6 chr6 154001688 154001847 -28413395 - AluJ SINE Alu -22 290 133 2528 69 3 0 chr6 154002236 154002541 -28412701 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr6 154003135 154003157 -28412085 + AT_rich Low_complexity Low_complexity 1 22 0 201 94 0 0 chr6 154003163 154003195 -28412047 + (TGG)n Simple_repeat Simple_repeat 3 34 0 213 39 0 0 chr6 154007269 154007295 -28407947 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 238 313 193 60 chr6 154009185 154009434 -28405808 - L2 LINE L2 0 3272 2991 520 153 0 0 chr6 154009738 154009823 -28405419 - AluJ SINE Alu -180 132 48 29 60 0 0 chr6 154009987 154010037 -28405205 + AT_rich Low_complexity Low_complexity 1 50 0 32 26 0 0 chr6 154010126 154010165 -28405077 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr6 154010846 154010881 -28404361 + AT_rich Low_complexity Low_complexity 1 35 0 282 116 0 0 chr6 154011459 154011502 -28403740 + (TCC)n Simple_repeat Simple_repeat 3 45 0 1838 158 0 10 chr6 154011504 154011807 -28403435 - AluSx SINE Alu -12 300 1 2060 164 11 14 chr6 154012922 154013288 -28401954 - MLT1A1 LTR MaLR 0 365 1 14670 182 26 15 chr6 154014045 154014406 -28400836 - L1PB1 LINE L1 -7 6860 6505 306 0 0 0 chr6 154014406 154014440 -28400802 + (TG)n Simple_repeat Simple_repeat 2 35 0 14670 182 26 15 chr6 154014440 154019004 -28396238 - L1PB1 LINE L1 -362 6505 1862 1807 171 0 13 chr6 154019004 154019308 -28395934 - AluJb SINE Alu -12 300 1 14670 182 26 15 chr6 154019308 154020183 -28395059 - L1PB1 LINE L1 -5005 1862 998 1103 157 0 0 chr6 154020175 154020360 -28394882 - L1PB1 LINE L1 -6678 185 1 * 27 29 0 0 chr6 154020425 154020459 -28394783 + AT_rich Low_complexity Low_complexity 1 34 0 1458 60 11 0 chr6 154020977 154021160 -28394082 - L1PA7 LINE L1 0 6154 5970 23 68 0 0 chr6 154021204 154021248 -28393994 + AT_rich Low_complexity Low_complexity 1 44 0 6585 64 17 4 chr6 154021561 154022537 -28392705 - L1PA8 LINE L1 -13 6159 5165 971 128 0 0 chr6 154022537 154022685 -28392557 + L1P LINE L1 4570 4717 -1429 414 328 63 5 chr6 154023303 154023492 -28391750 - MIR SINE MIR -15 247 48 204 325 12 48 chr6 154023939 154024022 -28391220 + MIR SINE MIR 66 145 -63 22 0 0 0 chr6 154024518 154024540 -28390702 + AT_rich Low_complexity Low_complexity 1 22 0 245 333 7 80 chr6 154025104 154025242 -28390000 - L2 LINE L2 -179 3093 2966 192 354 39 0 chr6 154025440 154025567 -28389675 - L2 LINE L2 -587 2727 2596 309 303 105 49 chr6 154025596 154026148 -28389094 - L2 LINE L2 -979 2335 1753 24 0 0 0 chr6 154026264 154026288 -28388954 + AT_rich Low_complexity Low_complexity 1 24 0 5620 86 27 21 chr6 154026288 154027133 -28388109 - L1MA2 LINE L1 0 6304 5455 29 47 0 0 chr6 154027171 154027214 -28388028 + AT_rich Low_complexity Low_complexity 1 43 0 2260 101 7 0 chr6 154028498 154028796 -28386446 - AluSx SINE Alu -12 300 1 25 31 0 0 chr6 154029286 154029318 -28385924 + AT_rich Low_complexity Low_complexity 1 32 0 5474 146 18 27 chr6 154029326 154030702 -28384540 - L1PB3 LINE L1 -7 6204 4851 2921 200 101 4 chr6 154030702 154031529 -28383713 - L1PB3 LINE L1 -3357 2846 1947 1238 180 21 4 chr6 154031525 154031764 -28383478 - L1 LINE L1 -2298 3905 3663 * 863 185 43 9 chr6 154031760 154031971 -28383271 + L1 LINE L1 2240 2457 -3689 * 6226 155 38 28 chr6 154031973 154033897 -28381345 - L1PB3 LINE L1 -4256 1948 6 3888 279 54 34 chr6 154033866 154034541 -28380701 - L1PBa LINE L1 -5223 981 321 * 315 0 0 0 chr6 154034541 154034576 -28380666 + (TG)n Simple_repeat Simple_repeat 2 36 0 3888 279 54 34 chr6 154034576 154035504 -28379738 - L1PBa LINE L1 -5883 321 -653 1982 156 0 0 chr6 154035566 154035861 -28379381 - AluSx SINE Alu -17 295 1 34 0 0 0 chr6 154036285 154036319 -28378923 + AT_rich Low_complexity Low_complexity 1 34 0 12089 156 11 8 chr6 154036332 154039353 -28375889 - L1PA13 LINE L1 -3 6160 3136 208 280 20 0 chr6 154039642 154039692 -28375550 - MIR SINE MIR -30 232 182 2315 91 0 3 chr6 154039793 154040089 -28375153 - AluSg SINE Alu -15 295 1 945 194 5 34 chr6 154040712 154040918 -28374324 + MER3 DNA MER1_type 2 201 -8 2104 117 0 7 chr6 154043606 154043897 -28371345 + AluSg SINE Alu 3 291 -19 243 0 0 0 chr6 154043920 154043947 -28371295 + (T)n Simple_repeat Simple_repeat 1 27 0 460 143 25 17 chr6 154044273 154044392 -28370850 + (TA)n Simple_repeat Simple_repeat 2 121 0 233 29 29 0 chr6 154044999 154045033 -28370209 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 903 162 0 7 chr6 154045038 154045180 -28370062 - AluYa8 SINE Alu -37 273 133 1198 127 0 0 chr6 154045182 154045347 -28369895 - AluSg/x SINE Alu -14 298 134 2320 105 0 0 chr6 154045347 154045653 -28369589 - AluSx SINE Alu -6 306 1 2647 265 113 58 chr6 154046847 154048524 -28366718 - L2 LINE L2 -1 3312 1532 224 333 14 0 chr6 154048547 154048616 -28366626 - L2 LINE L2 -2 3311 3242 2296 101 0 0 chr6 154049127 154049423 -28365819 + AluSc SINE Alu 1 296 -13 334 316 85 34 chr6 154049666 154049793 -28365449 + MIR SINE MIR 12 152 -110 1722 197 61 3 chr6 154049793 154050138 -28365104 - MLT1A1 LTR MaLR 0 365 1 334 316 85 34 chr6 154050138 154050187 -28365055 + MIR SINE MIR 152 197 -65 21 0 0 0 chr6 154050230 154050251 -28364991 + AT_rich Low_complexity Low_complexity 1 21 0 33 56 0 0 chr6 154050316 154050370 -28364872 + AT_rich Low_complexity Low_complexity 1 54 0 182 310 46 23 chr6 154050769 154050856 -28364386 - MIR3 SINE MIR -6 202 114 21 36 0 0 chr6 154051545 154051573 -28363669 + AT_rich Low_complexity Low_complexity 1 28 0 470 121 162 0 chr6 154051601 154051700 -28363542 - MER106B DNA MER1_type -910 149 35 290 237 124 41 chr6 154051975 154052072 -28363170 + MER5B DNA MER1_type 1 105 -73 962 203 23 0 chr6 154052079 154052256 -28362986 - MER5A DNA MER1_type -8 181 1 194 244 22 0 chr6 154052971 154053016 -28362226 - L2 LINE L2 -82 3231 3186 1586 204 27 65 chr6 154053178 154053590 -28361652 - MSTD LTR MaLR 0 396 1 220 258 45 30 chr6 154055072 154055138 -28360104 + MIR SINE MIR 195 261 -1 1986 133 16 10 chr6 154055481 154055790 -28359452 + AluSx SINE Alu 1 311 -1 209 317 48 116 chr6 154057025 154057293 -28357949 - L2 LINE L2 -28 3244 2995 1149 179 45 5 chr6 154057481 154057704 -28357538 - MER46A DNA MER2_type -4 232 1 2268 114 0 25 chr6 154057769 154058084 -28357158 + AluSq SINE Alu 1 307 -6 2371 84 3 0 chr6 154058084 154058380 -28356862 + AluSp SINE Alu 1 297 -16 480 234 0 0 chr6 154108385 154108480 -28306762 + HERVH LTR ERV1 5055 5149 -2564 * 2342 94 44 22 chr6 154108473 154109075 -28306167 + HERVH LTR ERV1 5593 7713 0 2643 95 58 21 chr6 154109075 154109507 -28305735 + LTR7 LTR ERV1 1 448 -2 370 191 53 0 chr6 154109603 154109697 -28305545 - MER110A LTR ERV1 -301 167 69 626 291 192 10 chr6 154109730 154110171 -28305071 - L2 LINE L2 -240 3073 2552 249 147 279 0 chr6 154110181 154110249 -28304993 + L2 LINE L2 2451 2537 -777 197 280 9 84 chr6 154110239 154110297 -28304945 - L2 LINE L2 -847 2467 2419 * 1304 202 65 57 chr6 154110297 154110684 -28304558 + MLT1B LTR MaLR 1 390 0 197 280 9 84 chr6 154110684 154110732 -28304510 - L2 LINE L2 -895 2419 2369 1508 104 4 58 chr6 154111026 154111266 -28303976 + AluY SINE Alu 1 227 -84 353 78 0 0 chr6 154111332 154111411 -28303831 + AluY SINE Alu 232 310 0 406 232 39 87 chr6 154111417 154111575 -28303667 + MIR SINE MIR 30 180 -64 737 245 68 103 chr6 154111873 154112253 -28302989 - MER66A LTR ERV1 0 478 112 271 308 33 8 chr6 154112487 154112607 -28302635 - MER117 DNA MER1_type 0 197 75 252 230 24 0 chr6 154112662 154112722 -28302520 - MIR SINE MIR -60 148 91 1840 252 40 73 chr6 154114966 154115450 -28299792 + L1M4c LINE L1 808 1243 -5141 1728 154 18 82 chr6 154115450 154115780 -28299462 + AluJb SINE Alu 1 309 -3 1840 252 40 73 chr6 154115780 154116314 -28298928 + L1M4c LINE L1 1243 1793 -4591 197 264 14 0 chr6 154116344 154116416 -28298826 + (TA)n Simple_repeat Simple_repeat 1 73 0 232 297 0 0 chr6 154118008 154118072 -28297170 + L2 LINE L2 1967 2030 -1284 992 117 13 0 chr6 154118075 154118229 -28297013 - THE1B LTR MaLR 0 364 209 1335 88 5 10 chr6 154118370 154118564 -28296678 - THE1B LTR MaLR -171 193 1 2147 131 7 0 chr6 154119432 154119729 -28295513 - AluSx SINE Alu -13 299 1 353 274 53 18 chr6 154119812 154119925 -28295317 + L2 LINE L2 3197 3313 0 181 246 88 35 chr6 154120325 154120382 -28294860 - MIR SINE MIR -114 148 89 338 256 106 1 chr6 154120623 154120729 -28294513 + MIR SINE MIR 31 137 -71 23 33 0 0 chr6 154123313 154123343 -28291899 + AT_rich Low_complexity Low_complexity 1 30 0 1084 291 66 3 chr6 154123400 154123720 -28291522 + L2 LINE L2 2544 2883 -431 1518 151 10 82 chr6 154123722 154124076 -28291166 + L1MC2 LINE L1 5996 7785 0 2280 133 30 25 chr6 154125327 154125689 -28289553 + THE1B LTR MaLR 1 364 0 300 317 62 21 chr6 154125693 154125838 -28289404 + L2 LINE L2 2687 2837 -477 467 354 33 63 chr6 154125910 154126243 -28288999 + L2 LINE L2 2950 3272 0 1318 185 52 60 chr6 154126896 154127263 -28287979 + MLT1A1 LTR MaLR 1 364 -1 1220 263 18 34 chr6 154128001 154128382 -28286860 + L2 LINE L2 2930 3304 -9 935 117 129 0 chr6 154129108 154129271 -28285971 + MSTA LTR MaLR 245 428 0 599 305 31 18 chr6 154129637 154129863 -28285379 - MIR SINE MIR -13 249 21 200 366 89 8 chr6 154130204 154130327 -28284915 + L2 LINE L2 3136 3268 -4 5349 77 4 1 chr6 154130850 154131539 -28283703 - LTR8 LTR ERV1 0 691 1 832 171 0 45 chr6 154132121 154132187 -28283055 + MER2 DNA MER2_type 43 110 -235 5587 115 26 20 chr6 154132187 154133082 -28282160 + MER4D LTR ERV1 3 902 -1 832 171 0 45 chr6 154133082 154133191 -28282051 + MER2 DNA MER2_type 110 210 -135 581 126 0 10 chr6 154133217 154133320 -28281922 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 260 229 16 0 chr6 154133338 154133399 -28281843 + MER2 DNA MER2_type 284 345 0 2800 173 12 8 chr6 154134235 154134745 -28280497 - MLT2B1 LTR ERVL -8 512 1 21 36 0 0 chr6 154134827 154134855 -28280387 + AT_rich Low_complexity Low_complexity 1 28 0 1694 173 10 46 chr6 154134928 154135234 -28280008 + AluJo SINE Alu 1 295 -17 261 313 152 0 chr6 154135793 154135905 -28279337 + MER5A DNA MER1_type 12 140 -49 640 218 91 62 chr6 154136030 154136338 -28278904 - MER110A LTR ERV1 -151 317 1 492 253 47 24 chr6 154136417 154136587 -28278655 - MER110A-int LTR ERV1 -13 4634 4461 1617 246 95 56 chr6 154136617 154137336 -28277906 - MER110A-int LTR ERV1 -466 4181 3435 2081 152 22 14 chr6 154137346 154137707 -28277535 + THE1B LTR MaLR 1 364 0 3676 106 0 0 chr6 154137712 154138248 -28276994 + HERVL LTR ERVL 5 540 -5114 1655 166 78 27 chr6 154138248 154138764 -28276478 + MLT2A2 LTR ERVL 17 554 0 670 256 73 44 chr6 154138764 154139147 -28276095 - MER110A-int LTR ERV1 -1218 3429 3036 858 273 35 32 chr6 154139218 154139533 -28275709 - MER110A-int LTR ERV1 -1742 2905 2590 1096 276 51 25 chr6 154139574 154140005 -28275237 - MER110A-int LTR ERV1 -2298 2349 1908 470 323 55 64 chr6 154140197 154141023 -28274219 - MER110A-int LTR ERV1 -2901 3900 1383 1795 128 89 45 chr6 154141134 154141492 -28273750 + THE1C LTR MaLR 2 375 0 9207 137 12 31 chr6 154141501 154143102 -28272140 + THE1C-int LTR MaLR 10 1580 0 1596 174 58 39 chr6 154143109 154143470 -28271772 + THE1C LTR MaLR 8 375 0 1983 211 72 75 chr6 154143788 154144484 -28270758 + LTR8A LTR ERV1 34 727 0 387 281 35 35 chr6 154144595 154144766 -28270476 - MER110A-int LTR ERV1 -4211 436 266 504 219 0 0 chr6 154144786 154144909 -28270333 + (TG)n Simple_repeat Simple_repeat 2 124 0 304 315 69 0 chr6 154145120 154145250 -28269992 + LTR8A-int LTR ERV1 81 219 -4428 186 103 0 0 chr6 154145274 154145303 -28269939 + (CA)n Simple_repeat Simple_repeat 1 29 0 338 385 20 4 chr6 154145325 154145577 -28269665 - MER89-int LTR ERV1 -4591 2210 1955 4838 145 77 6 chr6 154145880 154146722 -28268520 - MER4D LTR ERV1 0 903 2 2447 189 26 19 chr6 154146755 154147268 -28267974 - MER34C LTR ERV1 0 585 66 2364 134 3 0 chr6 154147268 154147633 -28267609 - MER47A DNA MER2_type 0 366 1 2447 189 26 19 chr6 154147633 154147696 -28267546 - MER34C LTR ERV1 -519 66 5 225 267 0 0 chr6 154148153 154148213 -28267029 + MER34C LTR ERV1 37 96 -489 2713 78 98 5 chr6 154148217 154148627 -28266615 - LTR7 LTR ERV1 -2 448 1 2046 143 0 7 chr6 154148653 154148946 -28266296 + AluSx SINE Alu 9 299 -13 1499 194 86 52 chr6 154148987 154149450 -28265792 + LTR29 LTR ERV1 144 622 0 1406 170 0 0 chr6 154149983 154150195 -28265047 + AluJb SINE Alu 3 214 -98 956 148 48 0 chr6 154150199 154150388 -28264854 - MER2 DNA MER2_type -144 201 4 3561 132 62 29 chr6 154150509 154151020 -28264222 - MER41B LTR ERV1 0 635 142 1832 166 0 11 chr6 154151020 154151303 -28263939 + AluSx SINE Alu 1 280 -32 270 0 0 0 chr6 154151305 154151335 -28263907 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3561 132 62 29 chr6 154151335 154151435 -28263807 - MER41B LTR ERV1 -493 142 1 1804 179 36 167 chr6 154151731 154152529 -28262713 + LTR8A LTR ERV1 34 727 0 1096 110 35 6 chr6 154152865 154153038 -28262204 - L1PA10 LINE L1 0 6168 5991 218 61 0 61 chr6 154153038 154153071 -28262171 - MER5A DNA MER1_type -112 77 47 948 228 27 86 chr6 154153231 154153639 -28261603 - MER110A LTR ERV1 -70 398 15 717 218 103 0 chr6 154154202 154154367 -28260875 + MER5A DNA MER1_type 4 185 -4 381 119 119 10 chr6 154154577 154154678 -28260564 - LTR37A LTR ERV1 -5 421 310 1843 171 82 20 chr6 154154906 154155344 -28259898 - L1MB4 LINE L1 -3 6177 5713 717 85 0 0 chr6 154155810 154155916 -28259326 + (TC)n Simple_repeat Simple_repeat 1 106 0 243 0 0 0 chr6 154155915 154155942 -28259300 + (CA)n Simple_repeat Simple_repeat 1 27 0 * 414 294 142 15 chr6 154156632 154156836 -28258406 - MIR SINE MIR -14 248 19 1125 239 85 41 chr6 154157630 154157994 -28257248 + MLT1B LTR MaLR 1 380 -10 2340 115 0 0 chr6 154159406 154159718 -28255524 + AluSq SINE Alu 1 312 -1 838 147 0 8 chr6 154161688 154161817 -28253425 - FLAM_C SINE Alu -3 130 3 1662 195 12 63 chr6 154162243 154162654 -28252588 + MLT1B LTR MaLR 1 390 0 218 288 15 0 chr6 154165321 154165387 -28249855 + MIR SINE MIR 195 261 -1 255 262 75 9 chr6 154166221 154166328 -28248914 + HAL1 LINE L1 20 133 -2374 1868 160 13 41 chr6 154166374 154166643 -28248599 - MLT2C1 LTR ERVL -9 388 132 2237 101 20 0 chr6 154166643 154166949 -28248293 + AluSx SINE Alu 1 312 0 1868 160 13 41 chr6 154166949 154167073 -28248169 - MLT2C1 LTR ERVL -265 132 6 594 308 79 29 chr6 154167259 154167620 -28247622 + MLT1E LTR MaLR 1 485 -169 2657 218 44 56 chr6 154167668 154168283 -28246959 + L1ME LINE L1 4245 4843 -1303 2075 131 14 0 chr6 154168283 154168573 -28246669 - AluSq SINE Alu -19 294 1 2657 218 44 56 chr6 154168573 154169007 -28246235 + L1ME LINE L1 4843 5281 -865 2081 138 7 0 chr6 154169054 154169352 -28245890 + AluSx SINE Alu 1 300 -12 770 251 23 5 chr6 154169380 154169599 -28245643 + L1ME LINE L1 5293 5515 -651 2359 70 3 26 chr6 154169814 154170127 -28245115 - AluY SINE Alu -5 306 1 483 303 34 34 chr6 154170207 154170441 -28244801 + MLT1K LTR MaLR 340 573 -15 251 194 45 45 chr6 154170861 154170928 -28244314 + MIR SINE MIR 79 145 -63 1014 198 14 19 chr6 154171099 154171311 -28243931 - MER20 DNA MER1_type -3 216 6 263 265 38 0 chr6 154172664 154172763 -28242479 - HAL1b LINE L1 -3 6118 1254 207 269 87 10 chr6 154173843 154173947 -28241295 + L2 LINE L2 3161 3272 0 256 426 14 7 chr6 154174618 154174766 -28240476 - L3 LINE CR1 -1307 270 122 1768 158 8 73 chr6 154175297 154175696 -28239546 - MLT1B LTR MaLR 0 390 18 987 161 312 3 chr6 154175687 154175972 -28239270 - LOR1a LTR ERV1 -122 375 3 * 383 247 39 7 chr6 154176084 154176203 -28239039 - MIR SINE MIR -68 140 15 3060 240 68 41 chr6 154177043 154178153 -28237089 - L1ME1 LINE L1 -4 6231 5036 2423 98 0 0 chr6 154178153 154178460 -28236782 - AluSx SINE Alu -5 307 1 3060 240 68 41 chr6 154178460 154179444 -28235798 - L1ME1 LINE L1 -1199 5036 4081 186 71 0 0 chr6 154179449 154179477 -28235765 + (CA)n Simple_repeat Simple_repeat 1 28 0 3388 155 57 33 chr6 154179600 154180402 -28234840 - L1MB5 LINE L1 -1 6881 6108 899 216 50 5 chr6 154180403 154181015 -28234227 - L1MB5 LINE L1 -1527 5321 4496 565 280 118 22 chr6 154181014 154181521 -28233721 - L1ME1 LINE L1 -4755 1641 1086 * 446 349 41 4 chr6 154181510 154181779 -28233463 - L1ME1 LINE L1 -6090 306 28 * 402 283 152 22 chr6 154182296 154182526 -28232716 - MIR SINE MIR -1 261 2 21 0 0 0 chr6 154182975 154182996 -28232246 + AT_rich Low_complexity Low_complexity 1 21 0 216 331 92 14 chr6 154183586 154183728 -28231514 + L2 LINE L2 3160 3312 -1 26 64 0 0 chr6 154183824 154183871 -28231371 + AT_rich Low_complexity Low_complexity 1 47 0 316 309 129 22 chr6 154184038 154184216 -28231026 - L1MB5 LINE L1 -4271 2578 2382 439 256 55 64 chr6 154184342 154184686 -28230556 - L1MEd LINE L1 -4886 1233 893 1250 320 64 22 chr6 154184695 154185363 -28229879 - L1MEd LINE L1 -5307 812 117 255 193 34 57 chr6 154185366 154185454 -28229788 - L1MEd LINE L1 -6027 92 7 361 252 84 0 chr6 154185455 154185574 -28229668 - L1M4 LINE L1 -1896 4250 4122 338 234 89 8 chr6 154185903 154186027 -28229215 - L1MC4 LINE L1 0 8042 7909 186 43 0 0 chr6 154186028 154186051 -28229191 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 522 0 0 0 chr6 154186050 154186108 -28229134 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 933 187 0 0 chr6 154186109 154186259 -28228983 - AluJb SINE Alu -27 285 136 238 257 150 0 chr6 154186264 154186377 -28228865 - L1MC4 LINE L1 -145 7897 7768 1021 304 68 9 chr6 154186578 154187002 -28228240 - L2 LINE L2 -1390 1924 1476 839 225 81 0 chr6 154187041 154187250 -28227992 - MER58B DNA MER1_type 0 341 116 218 330 10 31 chr6 154187282 154187379 -28227863 - L2 LINE L2 -1883 1431 1337 1904 167 0 37 chr6 154187432 154187756 -28227486 + AluJb SINE Alu 1 312 0 1349 154 48 143 chr6 154187772 154187930 -28227312 - MER31B LTR ERV1 -45 421 250 2362 99 0 16 chr6 154187930 154188243 -28226999 + AluSg SINE Alu 1 308 -2 1349 154 48 143 chr6 154188243 154188518 -28226724 - MER31B LTR ERV1 -216 250 29 2227 117 0 16 chr6 154190492 154190808 -28224434 - AluSx SINE Alu -1 311 1 549 56 0 101 chr6 154191641 154191730 -28223512 - MADE1 DNA Mariner 0 80 1 874 89 47 0 chr6 154192112 154192281 -28222961 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 1085 46 40 0 chr6 154192306 154192479 -28222763 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1023 192 132 49 chr6 154192479 154192783 -28222459 - MLT2B1 LTR ERVL -45 458 137 4880 123 39 28 chr6 154192785 154193682 -28221560 - Tigger3b DNA MER2_type -1 1230 324 864 133 0 0 chr6 154193689 154193817 -28221425 - Tigger3b DNA MER2_type -1090 141 14 539 177 39 0 chr6 154193823 154193953 -28221289 - MLT2B1 LTR ERVL -385 135 1 1029 210 88 80 chr6 154195910 154196333 -28218909 + MER63C DNA MER1_type 1 426 -504 853 363 126 10 chr6 154196523 154197248 -28217994 - L2 LINE L2 -1976 1338 530 513 285 136 58 chr6 154197991 154198773 -28216469 + L1M4 LINE L1 3373 4215 -1931 2031 137 3 7 chr6 154199392 154199684 -28215558 + AluSx SINE Alu 1 291 -21 1809 147 78 32 chr6 154200337 154200685 -28214557 + THE1B LTR MaLR 1 364 0 191 352 0 0 chr6 154200901 154200955 -28214287 - MIR SINE MIR -151 111 58 350 325 79 50 chr6 154201120 154201400 -28213842 + L1MC4a LINE L1 5760 6047 -1761 10289 198 14 17 chr6 154201669 154204094 -28211148 + L1 LINE L1 2394 4811 -1335 1181 137 24 9 chr6 154204125 154204336 -28210906 + L1PB3 LINE L1 5786 5999 -155 2216 142 3 0 chr6 154204537 154204883 -28210359 + MER1A DNA MER1_type 1 347 -182 1216 97 6 0 chr6 154205036 154205212 -28210030 + MER1A DNA MER1_type 353 529 0 298 241 36 67 chr6 154205384 154205579 -28209663 + LTR37B LTR ERV1 187 375 -93 226 195 0 0 chr6 154205581 154205622 -28209620 - LTR40b LTR ERVL -1 461 421 271 222 56 0 chr6 154206179 154206251 -28208991 + LTR37A LTR ERV1 323 398 -28 231 220 20 0 chr6 154206292 154206342 -28208900 + L2 LINE L2 3263 3313 0 318 186 12 81 chr6 154206672 154206758 -28208484 - MLT1K LTR MaLR 0 588 509 1005 221 0 5 chr6 154207477 154207685 -28207557 + MER3 DNA MER1_type 3 209 0 1220 232 196 2 chr6 154207694 154208108 -28207134 + MER89 LTR ERV1 1 494 -65 21 0 0 0 chr6 154208261 154208282 -28206960 + AT_rich Low_complexity Low_complexity 1 21 0 779 184 27 5 chr6 154208382 154208567 -28206675 + MER53 DNA DNA 1 189 0 540 281 24 48 chr6 154209068 154209278 -28205964 - L2 LINE L2 -17 3296 3092 491 254 39 12 chr6 154209302 154209491 -28205751 - MER110A LTR ERV1 0 468 265 2645 95 58 21 chr6 154209517 154209949 -28205293 + LTR7 LTR ERV1 1 448 -2 15684 132 24 13 chr6 154209951 154213086 -28202156 + HERVH LTR ERV1 1 2987 -4726 748 142 40 34 chr6 154213080 154213228 -28202014 + HERVH LTR ERV1 3140 3288 -4425 * 3409 105 4 6 chr6 154213220 154213723 -28201519 + HERVH LTR ERV1 3492 3993 -3720 2631 118 3 5 chr6 154213725 154214105 -28201137 + HERVH LTR ERV1 4488 4866 -2847 3215 142 53 12 chr6 154214431 154214995 -28200247 - L1MA9 LINE L1 -172 6140 5554 210 356 35 30 chr6 154215358 154215560 -28199682 - L2 LINE L2 -2349 965 763 1379 220 50 46 chr6 154215708 154216187 -28199055 - MER39 LTR ERV1 0 707 6 209 180 0 40 chr6 154218023 154218073 -28197169 + T-rich Low_complexity Low_complexity 3 50 0 252 269 26 13 chr6 154218908 154218986 -28196256 - MARNA DNA Mariner -471 115 37 2072 113 10 3 chr6 154219027 154219373 -28195869 - AluSq SINE Alu 0 313 1 1423 194 19 8 chr6 154219956 154220224 -28195018 + MLT1A1 LTR MaLR 1 271 -94 761 225 116 41 chr6 154220774 154221094 -28194148 + L1MC5 LINE L1 6784 7127 -834 1756 163 53 70 chr6 154221094 154221648 -28193594 - MLT2A2 LTR ERVL 0 554 1 655 235 110 68 chr6 154221648 154222031 -28193211 + L1MC5 LINE L1 7123 7521 -440 303 216 62 52 chr6 154222309 154222406 -28192836 + L1ME4a LINE L1 5987 6084 -37 238 204 45 0 chr6 154222454 154222498 -28192744 - Alu SINE Alu -127 172 127 901 137 0 20 chr6 154222500 154222646 -28192596 - FLAM_C SINE Alu 0 143 1 201 182 0 0 chr6 154223266 154223299 -28191943 + T-rich Low_complexity Low_complexity 1 33 0 1144 193 76 0 chr6 154223891 154224155 -28191087 + L1MB7 LINE L1 5844 6127 -57 2203 115 7 0 chr6 154225179 154225474 -28189768 + AluSx SINE Alu 1 297 -15 220 200 22 0 chr6 154225611 154225656 -28189586 + CT-rich Low_complexity Low_complexity 3 48 0 24 0 0 0 chr6 154226875 154226899 -28188343 + AT_rich Low_complexity Low_complexity 1 24 0 357 338 14 7 chr6 154229585 154229730 -28185512 - L2 LINE L2 -461 2853 2708 194 191 21 0 chr6 154229856 154229903 -28185339 + (TA)n Simple_repeat Simple_repeat 1 48 0 350 233 8 63 chr6 154229907 154230039 -28185203 - L1MC4 LINE L1 -1337 6705 6611 315 232 11 63 chr6 154229960 154230055 -28185187 + L1MC4 LINE L1 6614 6703 -1339 * 744 104 0 64 chr6 154230064 154230189 -28185053 - AluJ SINE Alu -7 305 189 1112 168 5 5 chr6 154230347 154230532 -28184710 - AluJ SINE Alu -127 185 1 375 212 0 0 chr6 154230555 154230621 -28184621 - AluJ/FLAM SINE Alu -236 66 1 1752 34 0 0 chr6 154231567 154231813 -28183429 + L1PA4 LINE L1 5939 6184 0 280 360 142 9 chr6 154233783 154234177 -28181065 - L2 LINE L2 -202 3070 2621 1503 185 113 42 chr6 154235995 154236218 -28179024 - MER63B DNA MER1_type -627 435 229 1374 117 0 106 chr6 154236218 154236474 -28178768 - MER30 DNA MER1_type -1 229 1 1503 185 113 42 chr6 154236474 154236656 -28178586 - MER63B DNA MER1_type -833 229 1 1597 181 61 41 chr6 154236770 154237112 -28178130 + MLT1D LTR MaLR 1 349 -156 228 306 16 0 chr6 154237135 154237197 -28178045 - MIR SINE MIR -63 145 83 2273 95 0 0 chr6 154238421 154238743 -28176499 - AluSx SINE Alu 0 322 1 260 293 43 50 chr6 154238936 154239076 -28176166 - HAL1b LINE L1 -879 469 331 217 254 0 0 chr6 154239893 154239948 -28175294 + (TA)n Simple_repeat Simple_repeat 2 56 0 369 210 141 105 chr6 154242648 154242896 -28172346 + MER112 DNA MER1_type 2 258 -2 829 252 34 26 chr6 154244175 154244409 -28170833 - MIR SINE MIR -14 248 13 338 210 0 0 chr6 154245564 154245626 -28169616 + AluSg/x SINE Alu 121 182 -120 1466 75 21 0 chr6 154245626 154245812 -28169430 + AluSc SINE Alu 96 285 -24 31 44 0 0 chr6 154245812 154245857 -28169385 + AT_rich Low_complexity Low_complexity 1 45 0 222 208 0 0 chr6 154247429 154247482 -28167760 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 154247495 154247516 -28167726 + AT_rich Low_complexity Low_complexity 1 21 0 2270 112 0 0 chr6 154247670 154247975 -28167267 + AluSg SINE Alu 1 305 -5 1848 155 13 29 chr6 154248140 154248450 -28166792 + AluSx SINE Alu 3 307 -5 30 59 0 0 chr6 154249123 154249174 -28166068 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr6 154249289 154249317 -28165925 + AT_rich Low_complexity Low_complexity 1 28 0 2071 146 0 0 chr6 154250102 154250410 -28164832 - AluSx SINE Alu -4 308 1 188 146 49 0 chr6 154252107 154252148 -28163094 - MIR SINE MIR -102 160 118 1311 179 52 69 chr6 154253133 154253227 -28162015 - MER4A LTR ERV1 0 465 371 255 21 85 0 chr6 154253227 154253274 -28161968 + T-rich Low_complexity Low_complexity 2 52 0 1311 179 52 69 chr6 154253274 154253721 -28161521 - MER4A LTR ERV1 -94 371 1 3362 271 99 19 chr6 154253891 154255218 -28160024 - L2 LINE L2 -1849 1465 33 1971 182 37 3 chr6 154259567 154259946 -28155296 + MSTD LTR MaLR 1 392 -4 799 15 82 0 chr6 154260046 154260180 -28155062 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 638 252 108 88 chr6 154260510 154260863 -28154379 - MLT1H LTR MaLR -54 495 136 1045 178 19 9 chr6 154261026 154261289 -28153953 + MER63 DNA MER1_type 641 938 -124 655 250 14 0 chr6 154261329 154261473 -28153769 + MER63 DNA MER1_type 915 1060 0 294 307 37 37 chr6 154262121 154262284 -28152958 - MIR SINE MIR -44 218 56 1142 202 121 46 chr6 154262539 154262885 -28152357 + MLT1A2 LTR MaLR 3 374 0 22 35 0 0 chr6 154263365 154263394 -28151848 + AT_rich Low_complexity Low_complexity 1 29 0 1251 279 64 27 chr6 154263528 154264087 -28151155 + MLT1G LTR MaLR 11 590 0 1018 146 0 0 chr6 154264796 154264940 -28150302 + AluSq/x SINE Alu 1 144 -168 442 116 43 0 chr6 154264940 154265051 -28150191 + AluSc SINE Alu 207 320 0 397 268 47 24 chr6 154265743 154265870 -28149372 - MER94 DNA DNA -3 131 2 496 229 9 0 chr6 154266356 154266465 -28148777 - MER94 DNA DNA -24 110 1 785 273 98 42 chr6 154267835 154268241 -28147001 + MLT1J2 LTR MaLR 2 430 -20 207 0 0 0 chr6 154268375 154268398 -28146844 + (A)n Simple_repeat Simple_repeat 1 23 0 358 350 7 15 chr6 154268510 154268647 -28146595 + L2 LINE L2 3177 3312 -1 370 264 44 0 chr6 154269124 154269215 -28146027 + L2 LINE L2 3211 3305 -8 330 296 193 0 chr6 154269316 154269451 -28145791 - MIR SINE MIR -18 244 84 2227 117 0 3 chr6 154270682 154270980 -28144262 + AluSx SINE Alu 1 297 -15 1026 93 0 0 chr6 154271312 154271463 -28143779 - L1PA13 LINE L1 -310 5853 5703 * 1224 140 72 30 chr6 154271460 154271725 -28143517 + L1P4 LINE L1 5075 5350 -796 34363 98 10 11 chr6 154271738 154277886 -28137356 - L1PA6 LINE L1 -11 6143 10 2591 73 3 0 chr6 154277885 154278242 -28137000 + L1P4 LINE L1 5340 5697 -471 * 2096 267 81 63 chr6 154278245 154279410 -28135832 + MER69 DNA AcHobo 203 1387 -1139 3347 178 27 6 chr6 154279961 154280664 -28134578 - L1MA7 LINE L1 0 6495 5778 544 162 0 0 chr6 154280664 154280763 -28134479 + L1M2 LINE L1 5501 5599 -713 * 12526 202 22 14 chr6 154280759 154281643 -28133599 - L1MA7 LINE L1 -798 5552 4676 2557 116 0 21 chr6 154281643 154282015 -28133227 - THE1B LTR MaLR 0 364 1 12526 202 22 14 chr6 154282015 154284239 -28131003 - L1MA7 LINE L1 -1674 4676 2422 1440 306 14 55 chr6 154284407 154285099 -28130143 - L1MA7 LINE L1 -5001 1280 617 361 326 8 0 chr6 154285072 154285204 -28130038 - L1MA7 LINE L1 -5520 761 629 * 2335 290 10 25 chr6 154285189 154285961 -28129281 - L1MA7 LINE L1 -5520 761 1 2351 217 55 27 chr6 154286350 154287102 -28128140 + MER69 DNA AcHobo 1754 2526 0 331 264 92 37 chr6 154287804 154287967 -28127275 + L2 LINE L2 2866 3037 -235 197 363 75 0 chr6 154288115 154288195 -28127047 + L2 LINE L2 3186 3271 -1 362 287 110 68 chr6 154288693 154289155 -28126087 - L2 LINE L2 -5 3267 2792 1592 158 166 57 chr6 154289909 154290153 -28125089 - MSTA LTR MaLR 0 428 125 2358 104 3 0 chr6 154290153 154290462 -28124780 - AluSg SINE Alu 0 310 1 1592 158 166 57 chr6 154290462 154290603 -28124639 - MSTA LTR MaLR -303 125 1 291 254 68 25 chr6 154290604 154290722 -28124520 - L2 LINE L2 -11 3302 3180 315 323 32 8 chr6 154290956 154291080 -28124162 + MIR SINE MIR 110 236 -26 683 183 7 13 chr6 154292793 154292946 -28122296 + L1MA4 LINE L1 6148 6299 -1 1780 112 3 93 chr6 154293027 154293339 -28121903 + AluSq SINE Alu 1 284 -29 264 30 0 0 chr6 154293344 154293377 -28121865 + (CAA)n Simple_repeat Simple_repeat 2 34 0 757 140 0 0 chr6 154294965 154295072 -28120170 - AluSp/q SINE Alu -17 296 190 208 172 86 86 chr6 154295141 154295234 -28120008 - MER5C DNA MER1_type -11 313 221 567 183 7 7 chr6 154295271 154295408 -28119834 - L1MA7 LINE L1 0 6291 6155 609 138 50 50 chr6 154295444 154295603 -28119639 - L1MA7 LINE L1 -114 6177 6019 305 329 24 0 chr6 154295603 154295688 -28119554 - MER5C DNA MER1_type -237 87 1 243 312 21 0 chr6 154295834 154295927 -28119315 + MIR SINE MIR 65 159 -103 904 231 16 98 chr6 154295932 154296308 -28118934 - LTR41 LTR ERVL -6 767 423 241 197 40 13 chr6 154296606 154296682 -28118560 - MLT1K LTR MaLR -2 586 509 261 119 0 0 chr6 154297946 154297988 -28117254 + (CA)n Simple_repeat Simple_repeat 2 43 0 683 205 51 80 chr6 154298464 154298500 -28116742 + MLT1D LTR MaLR 2 38 -429 2299 114 0 3 chr6 154298500 154298808 -28116434 + AluSx SINE Alu 1 307 -5 683 205 51 80 chr6 154298808 154299087 -28116155 + MLT1D LTR MaLR 38 308 -159 569 278 130 17 chr6 154300166 154300465 -28114777 + MLT1J2 LTR MaLR 94 426 -24 260 228 33 22 chr6 154300519 154300611 -28114631 + (CA)n Simple_repeat Simple_repeat 1 93 0 1910 158 65 6 chr6 154300877 154301231 -28114011 - THE1C LTR MaLR 0 375 1 2331 84 7 0 chr6 154301418 154301714 -28113528 + AluSc SINE Alu 1 298 -11 192 314 47 0 chr6 154302578 154302664 -28112578 + L2 LINE L2 2034 2123 -1191 297 285 158 24 chr6 154302791 154302956 -28112286 - L2 LINE L2 -954 2360 2174 827 308 42 32 chr6 154302958 154303361 -28111881 - MLT1I LTR MaLR 0 409 3 2513 202 19 33 chr6 154303450 154303970 -28111272 + MLT2B2 LTR ERVL 3 515 0 336 317 188 62 chr6 154304412 154304680 -28110562 + L2 LINE L2 1965 2198 -1116 2230 117 3 3 chr6 154304680 154304979 -28110263 - AluSq SINE Alu -14 299 1 336 317 188 62 chr6 154304979 154305504 -28109738 + L2 LINE L2 2198 2858 -456 1681 168 72 14 chr6 154305578 154305923 -28109319 + MLT1A1 LTR MaLR 1 365 0 200 59 29 0 chr6 154305984 154306018 -28109224 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 327 221 15 0 chr6 154306244 154306312 -28108930 + L2 LINE L2 3243 3311 -2 279 281 0 31 chr6 154306710 154306806 -28108436 + GA-rich Low_complexity Low_complexity 3 95 0 22 35 0 0 chr6 154306866 154306895 -28108347 + AT_rich Low_complexity Low_complexity 1 29 0 838 169 28 28 chr6 154307565 154307743 -28107499 + L1MB8 LINE L1 6001 6178 0 1119 265 121 14 chr6 154308203 154308520 -28106722 + LTR33A LTR ERVL 60 418 -105 855 193 69 144 chr6 154308520 154308924 -28106318 + MLT1A2 LTR MaLR 1 374 0 1119 265 121 14 chr6 154308924 154309043 -28106199 + LTR33A LTR ERVL 418 523 0 2088 92 3 44 chr6 154309317 154309451 -28105791 + AluSx SINE Alu 3 141 -176 2554 65 0 7 chr6 154309451 154309759 -28105483 + AluY SINE Alu 1 306 -5 2088 92 3 44 chr6 154309759 154309951 -28105291 + AluSx SINE Alu 141 317 0 203 301 199 22 chr6 154311018 154311154 -28104088 - L2 LINE L2 -920 2394 2235 187 209 47 0 chr6 154312467 154312510 -28102732 - L2 LINE L2 -1 3312 3268 719 357 108 20 chr6 154312623 154313301 -28101941 - L2 LINE L2 -258 3055 2316 233 323 94 0 chr6 154313668 154313764 -28101478 + L2 LINE L2 3116 3220 -52 433 211 118 12 chr6 154314093 154314254 -28100988 - L1ME4a LINE L1 0 6121 5944 256 232 20 0 chr6 154314944 154315043 -28100199 + (CATA)n Simple_repeat Simple_repeat 2 102 0 2145 179 87 2 chr6 154315124 154315549 -28099693 - LOR1b LTR ERV1 0 461 1 2074 196 28 32 chr6 154316507 154317038 -28098204 + MER34 LTR ERV1 11 539 -3 1349 149 73 7 chr6 154317233 154317521 -28097721 - L1MA8 LINE L1 -2 6289 5983 2084 121 6 16 chr6 154317736 154318078 -28097164 - AluSx SINE Alu 0 312 1 234 338 146 71 chr6 154318123 154318603 -28096639 + L2 LINE L2 2343 2858 -456 1681 168 72 14 chr6 154318677 154319022 -28096220 + MLT1A1 LTR MaLR 1 365 0 200 59 29 0 chr6 154319083 154319117 -28096125 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 327 221 15 0 chr6 154319343 154319411 -28095831 + L2 LINE L2 3243 3311 -2 279 281 0 31 chr6 154319808 154319904 -28095338 + GA-rich Low_complexity Low_complexity 3 95 0 22 35 0 0 chr6 154319965 154319994 -28095248 + AT_rich Low_complexity Low_complexity 1 29 0 838 169 28 28 chr6 154320665 154320843 -28094399 + L1MB8 LINE L1 6001 6178 0 1119 265 121 14 chr6 154321303 154321620 -28093622 + LTR33A LTR ERVL 60 418 -105 855 193 69 144 chr6 154321620 154322024 -28093218 + MLT1A2 LTR MaLR 1 374 0 1119 265 121 14 chr6 154322024 154322143 -28093099 + LTR33A LTR ERVL 418 523 0 2088 92 3 44 chr6 154322417 154322551 -28092691 + AluSx SINE Alu 3 141 -176 2554 65 0 7 chr6 154322551 154322859 -28092383 + AluY SINE Alu 1 306 -5 2088 92 3 44 chr6 154322859 154323051 -28092191 + AluSx SINE Alu 141 317 0 5604 286 31 38 chr6 154323952 154326165 -28089077 - HERV3 LTR ERV1 -5604 2822 627 1723 204 29 27 chr6 154326314 154326764 -28088478 + MER34 LTR ERV1 89 539 -3 1252 156 52 17 chr6 154326959 154327248 -28087994 - L1MA8 LINE L1 -2 6289 5991 2122 112 3 16 chr6 154327463 154327803 -28087439 - AluSc SINE Alu 0 309 1 444 273 20 0 chr6 154328552 154328702 -28086540 + MER103 DNA DNA 2 154 -12 192 273 30 15 chr6 154330180 154330246 -28084996 + MIR SINE MIR 166 232 -30 28 0 0 0 chr6 154332066 154332094 -28083148 + AT_rich Low_complexity Low_complexity 1 28 0 258 241 0 0 chr6 154332135 154332189 -28083053 + L1MEd LINE L1 440 493 -5626 508 240 69 54 chr6 154332519 154332719 -28082523 + L1MEd LINE L1 904 1112 -5007 2238 118 0 3 chr6 154332719 154333023 -28082219 + AluSx SINE Alu 1 303 -9 508 240 69 54 chr6 154333023 154333139 -28082103 + L1MEd LINE L1 1112 1225 -4894 572 220 17 0 chr6 154333322 154333440 -28081802 - L2 LINE L2 0 3313 3194 414 280 28 9 chr6 154333876 154333983 -28081259 + L2 LINE L2 3197 3305 -8 1558 75 5 5 chr6 154338207 154338460 -28076782 - AluY SINE Alu 0 311 83 183 246 18 18 chr6 154338488 154338545 -28076697 - L2 LINE L2 0 3313 3257 869 294 51 40 chr6 154338726 154339154 -28076088 + MLT1J LTR MaLR 50 482 -29 326 335 31 62 chr6 154339323 154339517 -28075725 - MIR SINE MIR -44 218 31 974 154 21 16 chr6 154340038 154340226 -28075016 + MER53 DNA DNA 1 189 0 288 282 142 53 chr6 154340936 154341259 -28073983 - L1ME4a LINE L1 -222 5899 5548 3797 174 91 13 chr6 154341684 154342521 -28072721 + L1MA9 LINE L1 5254 6155 -157 1081 209 9 5 chr6 154343017 154343237 -28072005 - MER58A DNA MER1_type -2 222 2 2694 88 6 6 chr6 154343360 154343724 -28071518 - THE1B LTR MaLR 0 364 1 1948 95 0 0 chr6 154343822 154344065 -28071177 + AluY SINE Alu 54 296 -15 235 304 14 14 chr6 154345706 154345775 -28069467 + MIR SINE MIR 7 75 -187 1782 177 3 10 chr6 154346125 154346425 -28068817 + AluSx SINE Alu 2 299 -13 482 210 40 76 chr6 154346489 154346805 -28068437 + MER31B LTR ERV1 33 510 -4 27 0 0 0 chr6 154346903 154346930 -28068312 + AT_rich Low_complexity Low_complexity 1 27 0 2518 66 0 22 chr6 154348083 154348401 -28066841 + AluY SINE Alu 1 311 0 901 226 74 63 chr6 154348523 154348917 -28066325 - MLT1C LTR MaLR 0 467 70 248 214 120 34 chr6 154348970 154349016 -28066226 - L1MC/D LINE L1 -1983 5825 5784 1674 160 20 29 chr6 154349016 154349366 -28065876 + MER7A DNA MER2_type 1 345 -1 248 214 120 34 chr6 154349366 154349436 -28065806 - L1MC/D LINE L1 -2024 5784 5699 310 308 27 55 chr6 154349465 154349611 -28065631 + L2 LINE L2 3161 3302 -11 275 286 58 0 chr6 154349652 154349804 -28065438 - L1MC/D LINE L1 -569 5597 5434 217 383 93 0 chr6 154349839 154349946 -28065296 + L2 LINE L2 3146 3262 -10 445 304 150 62 chr6 154349998 154350304 -28064938 - MLT1C LTR MaLR 0 467 135 2484 112 22 0 chr6 154350315 154350671 -28064571 - THE1B LTR MaLR 0 364 1 322 231 11 11 chr6 154350680 154350771 -28064471 + MLT1C LTR MaLR 53 143 -324 1796 132 5 43 chr6 154350918 154351290 -28063952 - LTR60 LTR ERV1 0 586 229 1446 162 0 25 chr6 154351290 154351574 -28063668 - LTR60 LTR ERV1 -307 279 3 184 169 56 141 chr6 154352410 154352481 -28062761 - MER5B DNA MER1_type -45 133 69 1749 152 3 33 chr6 154352684 154352986 -28062256 - AluJb SINE Alu -19 293 1 1725 227 19 14 chr6 154353191 154353647 -28061595 + MER89 LTR ERV1 3 559 0 1029 207 136 65 chr6 154353661 154353999 -28061243 - MER93b LTR ERV1 0 373 12 789 254 25 51 chr6 154354008 154354363 -28060879 - MER31-int LTR ERV1 -384 7153 6808 287 185 42 126 chr6 154354362 154354481 -28060761 - MER31-int LTR ERV1 -202 4734 4626 * 575 258 7 20 chr6 154354479 154354630 -28060612 - MER31-int LTR ERV1 -941 3930 3782 5598 206 81 25 chr6 154354654 154356289 -28058953 - MER31-int LTR ERV1 -603 4333 2608 24 0 0 0 chr6 154356339 154356363 -28058879 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 154356389 154356413 -28058829 + AT_rich Low_complexity Low_complexity 1 24 0 389 205 92 100 chr6 154356512 154356741 -28058501 - MER31-int LTR ERV1 -2974 1962 1736 363 249 9 105 chr6 154356807 154357036 -28058206 - LTR57-int LTR ERVL -3832 1511 1305 * 845 233 40 79 chr6 154356910 154357489 -28057753 - MER31-int LTR ERV1 -3251 1685 1130 2694 91 0 0 chr6 154357817 154358170 -28057072 - THE1A LTR MaLR 0 355 3 3297 142 7 16 chr6 154358172 154358744 -28056498 - THE1A-int LTR MaLR 0 1580 1014 13193 96 19 20 chr6 154360098 154362211 -28053031 - MER31-int LTR ERV1 -5066 2647 537 295 156 78 13 chr6 154362652 154362729 -28052513 - MER31-int LTR ERV1 -3119 1817 1736 355 238 13 117 chr6 154362795 154363026 -28052216 - LTR57-int LTR ERVL -3832 1511 1305 * 1454 211 95 63 chr6 154362899 154363678 -28051564 - MER31-int LTR ERV1 -3251 1685 882 674 239 5 37 chr6 154364298 154364486 -28050756 - MER93b LTR ERV1 0 373 192 2034 73 0 0 chr6 154364490 154364738 -28050504 - AluY SINE Alu -40 271 24 379 211 135 10 chr6 154364754 154364858 -28050384 - MER93b LTR ERV1 -244 129 13 2408 121 11 16 chr6 154365390 154365763 -28049479 - THE1C LTR MaLR 0 375 5 34 0 0 0 chr6 154367112 154367146 -28048096 + AT_rich Low_complexity Low_complexity 1 34 0 1784 71 28 0 chr6 154367303 154367557 -28047685 - L1MA1 LINE L1 -5 6297 6037 1131 332 17 7 chr6 154367601 154368020 -28047222 + LTR16A LTR ERVL 19 441 -9 1946 319 81 44 chr6 154368247 154368486 -28046756 + HERV16 LTR ERVL 251 480 -5174 2287 80 3 7 chr6 154368486 154368774 -28046468 + AluSg SINE Alu 1 287 -23 1946 319 81 44 chr6 154368774 154368786 -28046456 + HERV16 LTR ERVL 480 490 -5164 2030 98 0 86 chr6 154368786 154369101 -28046141 + AluSx SINE Alu 1 288 -24 1946 319 81 44 chr6 154369101 154372097 -28043145 + HERV16 LTR ERVL 490 3707 -1947 1024 330 81 44 chr6 154372347 154372951 -28042291 + HERV16 LTR ERVL 4099 4679 -1085 2151 94 0 14 chr6 154372951 154373268 -28041974 - AluY SINE Alu 0 313 1 1024 330 81 44 chr6 154373268 154373783 -28041459 + HERV16 LTR ERVL 4679 5261 -503 730 287 70 32 chr6 154374011 154374356 -28040886 + LTR16A LTR ERVL 17 374 -76 353 225 67 11 chr6 154375479 154375568 -28039674 + MER5A DNA MER1_type 1 94 -95 1068 223 6 31 chr6 154377101 154377363 -28037879 + L1M2 LINE L1 2379 2633 -4216 548 101 13 0 chr6 154377363 154377442 -28037800 + MADE1 DNA Mariner 1 80 0 1068 223 6 31 chr6 154377442 154377498 -28037744 + L1M2 LINE L1 2633 2689 -4160 228 305 42 11 chr6 154382478 154382573 -28032669 + L2 LINE L2 2967 3064 -208 270 316 21 11 chr6 154382800 154382895 -28032347 - MIR3 SINE MIR -36 172 77 237 318 101 54 chr6 154383284 154383413 -28031829 + L2 LINE L2 3134 3268 -4 1896 172 52 3 chr6 154383965 154384313 -28030929 - MLT1A1 LTR MaLR 0 365 1 336 24 0 0 chr6 154384778 154384819 -28030423 + (TG)n Simple_repeat Simple_repeat 2 42 0 319 291 76 44 chr6 154386199 154386383 -28028859 + MLT1K LTR MaLR 418 580 -8 1393 29 0 0 chr6 154386567 154386740 -28028502 - L1PA2 LINE L1 -1491 4655 4483 7853 17 0 0 chr6 154386740 154388230 -28027012 + L1PA2 LINE L1 4666 6155 0 450 325 96 9 chr6 154388759 154389091 -28026151 + L1M4 LINE L1 4232 4592 -1554 743 176 13 0 chr6 154389248 154389401 -28025841 + GA-rich Low_complexity Low_complexity 4 158 0 872 199 4 0 chr6 154389419 154389708 -28025534 + GA-rich Low_complexity Low_complexity 1 290 0 1287 303 132 12 chr6 154389708 154390354 -28024888 - L2 LINE L2 -263 3009 2288 592 251 15 15 chr6 154390354 154390549 -28024693 - MER69B DNA AcHobo 0 1226 1032 4276 169 58 3 chr6 154390564 154391346 -28023896 - LTR1B LTR ERV1 -1 825 1 1040 239 58 37 chr6 154391358 154391706 -28023536 - MER69B DNA AcHobo -347 879 525 2146 221 81 8 chr6 154391720 154392366 -28022876 - L1ME2 LINE L1 -21 6143 5451 1306 292 58 19 chr6 154392370 154392887 -28022355 - MER69B DNA AcHobo -689 537 1 2577 61 3 0 chr6 154392972 154393282 -28021960 + AluY SINE Alu 1 311 0 685 184 7 7 chr6 154393317 154393453 -28021789 - MER57A LTR ERV1 0 403 268 25 31 0 0 chr6 154393976 154394008 -28021234 + AT_rich Low_complexity Low_complexity 1 32 0 1994 148 0 19 chr6 154394010 154394321 -28020921 - AluSx SINE Alu -7 305 1 1724 248 40 40 chr6 154395595 154395666 -28019576 + L1ME3 LINE L1 5567 5637 -525 1968 70 0 0 chr6 154395666 154395909 -28019333 - AluSc SINE Alu -1 308 66 1724 248 40 40 chr6 154395909 154396430 -28018812 + L1ME3 LINE L1 5636 6159 -3 3274 145 49 5 chr6 154396478 154397051 -28018191 + MER7C DNA MER2_type 2 599 -3 540 149 0 0 chr6 154397517 154397604 -28017638 + MSTD LTR MaLR 254 340 -56 1508 196 3 51 chr6 154397721 154398032 -28017210 + AluJo SINE Alu 1 296 -16 938 225 83 37 chr6 154398547 154398871 -28016371 + MER2 DNA MER2_type 6 344 -1 189 0 0 0 chr6 154398876 154398897 -28016345 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 379 348 46 18 chr6 154399097 154399425 -28015817 + HAL1 LINE L1 303 639 -1868 415 284 86 49 chr6 154399603 154399846 -28015396 + HAL1 LINE L1 899 1150 -1357 691 274 92 46 chr6 154400136 154400549 -28014693 + HAL1 LINE L1 1485 1916 -591 2187 177 23 7 chr6 154400570 154401002 -28014240 - MSTB1 LTR MaLR 0 432 1 356 203 8 148 chr6 154401019 154401255 -28013987 + HAL1 LINE L1 1959 2161 -346 717 285 111 25 chr6 154401304 154401864 -28013378 + MLT1G LTR MaLR 2 578 -12 347 288 25 58 chr6 154401871 154402149 -28013093 + HAL1 LINE L1 2239 2507 0 1774 197 62 19 chr6 154402564 154403031 -28012211 - Charlie1b DNA MER1_type -6 517 31 521 287 10 12 chr6 154403220 154403423 -28011819 + MIR SINE MIR 8 255 -7 202 333 61 0 chr6 154403476 154403575 -28011667 + MIR SINE MIR 23 127 -135 280 332 124 16 chr6 154404368 154404561 -28010681 + L2 LINE L2 2840 3053 -219 3706 164 124 25 chr6 154404674 154405426 -28009816 - LTR1B LTR ERV1 0 826 1 310 109 18 18 chr6 154405815 154405870 -28009372 + MER101B LTR ERV1 1 55 -515 1035 262 79 36 chr6 154406086 154406506 -28008736 + LTR51 LTR ERV1 222 659 -12 303 311 106 0 chr6 154406799 154406931 -28008311 + MIR SINE MIR 117 262 0 378 171 0 0 chr6 154407068 154407138 -28008104 + CT-rich Low_complexity Low_complexity 4 73 0 24 0 0 0 chr6 154408057 154408081 -28007161 + AT_rich Low_complexity Low_complexity 1 24 0 333 268 49 63 chr6 154408583 154408725 -28006517 + MIR3 SINE MIR 48 187 -21 941 288 92 43 chr6 154408912 154409304 -28005938 - LTR33 LTR ERVL -6 515 144 1448 185 76 67 chr6 154409304 154409342 -28005900 - MLT2D LTR ERVL 0 414 378 548 65 13 0 chr6 154409342 154409419 -28005823 + (TG)n Simple_repeat Simple_repeat 2 79 0 1448 185 76 67 chr6 154409419 154409461 -28005781 - MLT2D LTR ERVL -36 378 338 333 0 0 0 chr6 154409461 154409498 -28005744 + (GA)n Simple_repeat Simple_repeat 2 38 0 1448 185 76 67 chr6 154409498 154409822 -28005420 - MLT2D LTR ERVL -76 338 5 941 288 92 43 chr6 154409822 154409918 -28005324 - LTR33 LTR ERVL -377 144 3 278 354 0 0 chr6 154409961 154410043 -28005199 + L2 LINE L2 3158 3239 -33 296 243 107 39 chr6 154411258 154411361 -28003881 + L2 LINE L2 3162 3271 -1 2008 199 32 25 chr6 154411805 154412247 -28002995 + MER87 LTR ERV1 1 445 -96 4552 60 7 8 chr6 154412247 154413277 -28001965 - MER11A LTR ERVK 0 1266 1 534 162 20 0 chr6 154413277 154413376 -28001866 + MER87 LTR ERV1 441 541 0 1057 162 34 10 chr6 154413915 154414119 -28001123 - MER58A DNA MER1_type -15 209 1 182 335 113 67 chr6 154414206 154414445 -28000797 + L2 LINE L2 3018 3267 -5 185 196 20 0 chr6 154414491 154414542 -28000700 + GA-rich Low_complexity Low_complexity 2 53 0 189 0 0 0 chr6 154416310 154416331 -27998911 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 682 295 31 47 chr6 154416745 154417003 -27998239 - MIR SINE MIR -2 260 7 1677 217 47 38 chr6 154417053 154417602 -27997640 + MER34B LTR ERV1 10 563 -2 2533 84 121 12 chr6 154417613 154418017 -27997225 - LTR7 LTR ERV1 -2 448 1 2170 101 50 13 chr6 154418017 154418393 -27996849 - HERVH LTR ERV1 0 7713 7324 1272 134 18 5 chr6 154418393 154418610 -27996632 - HERVH LTR ERV1 -1894 5819 5600 4269 130 0 1 chr6 154418611 154419274 -27995968 - HERVH LTR ERV1 -2564 5149 4488 3089 116 6 6 chr6 154419276 154419778 -27995464 - HERVH LTR ERV1 -3720 3993 3492 804 155 20 0 chr6 154419768 154419916 -27995326 - HERVH LTR ERV1 -4423 3290 3140 * 19149 95 19 14 chr6 154419910 154422884 -27992358 - HERVH LTR ERV1 -4726 2987 1 2659 75 123 0 chr6 154422886 154423285 -27991957 - LTR7 LTR ERV1 -2 448 1 271 373 27 0 chr6 154423334 154423444 -27991798 - MIR SINE MIR -95 167 55 23 0 0 0 chr6 154423458 154423481 -27991761 + AT_rich Low_complexity Low_complexity 1 23 0 1822 93 0 0 chr6 154423485 154423711 -27991531 - AluSc SINE Alu -83 226 1 261 0 0 0 chr6 154425083 154425112 -27990130 + (TTG)n Simple_repeat Simple_repeat 3 31 0 297 326 41 20 chr6 154425179 154425326 -27989916 + MIR SINE MIR 1 150 -112 882 167 0 7 chr6 154425336 154425486 -27989756 - MLT1A1 LTR MaLR -2 363 215 257 225 45 54 chr6 154425682 154425793 -27989449 + MLT1K LTR MaLR 470 579 -9 4441 58 14 0 chr6 154425817 154426400 -27988842 + LTR10C LTR ERV1 1 591 0 1207 296 73 37 chr6 154426425 154427229 -27988013 + L2 LINE L2 2465 3298 -15 390 253 0 11 chr6 154427521 154427616 -27987626 - MIR SINE MIR -19 243 150 2078 167 0 6 chr6 154427622 154427976 -27987266 + MLT1A1 LTR MaLR 12 363 -2 240 268 52 31 chr6 154427990 154428087 -27987155 - MIR SINE MIR -128 134 36 183 80 0 0 chr6 154428943 154428968 -27986274 + (CAA)n Simple_repeat Simple_repeat 2 26 0 769 269 63 10 chr6 154431976 154432359 -27982883 - L1MC4 LINE L1 -11 8031 7629 880 234 0 56 chr6 154432669 154432850 -27982392 - MER58A DNA MER1_type -2201 219 52 1805 153 35 3 chr6 154432850 154433137 -27982105 + AluSx SINE Alu 1 296 -16 880 234 0 56 chr6 154433137 154433186 -27982056 - MER58A DNA MER1_type -2368 52 2 1443 244 110 32 chr6 154433882 154434484 -27980758 - L1ME3A LINE L1 -4 6100 5452 787 282 105 46 chr6 154434505 154435454 -27979788 - L1ME3A LINE L1 -846 5234 4187 308 131 0 0 chr6 154435454 154435515 -27979727 - L1PB1 LINE L1 0 6151 6091 787 282 105 46 chr6 154435515 154435861 -27979381 - L1ME3A LINE L1 -1893 4187 3863 1183 173 32 12 chr6 154435883 154436131 -27979111 - L1PB3 LINE L1 -35 6119 5867 886 291 28 14 chr6 154436132 154436554 -27978688 - L1ME3A LINE L1 -2217 3863 3436 949 109 14 0 chr6 154436555 154436702 -27978540 - AluY SINE Alu -7 304 156 789 258 71 18 chr6 154436760 154437268 -27977974 - L1ME3A LINE L1 -2699 3381 2847 2123 133 0 7 chr6 154437369 154437671 -27977571 - AluSx SINE Alu -12 300 1 334 346 60 48 chr6 154437751 154438020 -27977222 - L1ME3A LINE L1 -5796 274 3 312 360 92 46 chr6 154438342 154438689 -27976553 - L2 LINE L2 -13 3259 2897 243 315 94 64 chr6 154438833 154439068 -27976174 - L2 LINE L2 -1318 1996 1755 288 303 61 10 chr6 154439333 154439432 -27975810 - L2 LINE L2 -1 3271 3168 2332 126 19 19 chr6 154439588 154439952 -27975290 + THE1B LTR MaLR 1 364 0 12087 91 2 1 chr6 154439952 154441531 -27973711 + THE1B-int LTR MaLR 1 1580 0 1611 173 75 26 chr6 154441531 154441878 -27973364 + THE1B LTR MaLR 1 364 0 438 306 61 27 chr6 154442881 154443028 -27972214 - L2 LINE L2 0 3272 3121 39 0 0 0 chr6 154443313 154443352 -27971890 + AT_rich Low_complexity Low_complexity 1 39 0 754 147 93 0 chr6 154443352 154443502 -27971740 - L1MA2 LINE L1 -16 7707 7544 14697 156 34 13 chr6 154443503 154446934 -27968308 - L1MA2 LINE L1 -619 7104 3746 2356 113 0 0 chr6 154446934 154447236 -27968006 - AluSx SINE Alu -10 302 1 14697 156 34 13 chr6 154447236 154447321 -27967921 - L1MA2 LINE L1 -3977 3746 3664 279 0 0 0 chr6 154447321 154447352 -27967890 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 14697 156 34 13 chr6 154447352 154447535 -27967707 - L1MA2 LINE L1 -4059 3664 3486 7060 63 18 1 chr6 154447535 154448417 -27966825 + MER11D LTR ERVK 1 897 0 14697 156 34 13 chr6 154448417 154448440 -27966802 - L1MA2 LINE L1 -4237 3486 3465 183 80 0 0 chr6 154448440 154448465 -27966777 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 14697 156 34 13 chr6 154448465 154450110 -27965132 - L1MA2 LINE L1 -4258 3465 1638 2120 215 31 14 chr6 154450090 154450574 -27964668 - L1MA2 LINE L1 -7061 504 13 * 224 357 12 12 chr6 154451177 154451261 -27963981 + L2 LINE L2 2899 2982 -331 541 256 45 103 chr6 154451295 154451721 -27963521 + MLT1I LTR MaLR 7 407 -2 230 433 67 0 chr6 154451839 154451973 -27963269 + L2 LINE L2 3129 3271 -1 910 317 47 6 chr6 154452525 154452888 -27962354 + LTR16C LTR ERVL 114 491 0 27 0 0 0 chr6 154452911 154452938 -27962304 + AT_rich Low_complexity Low_complexity 1 27 0 514 194 0 20 chr6 154452940 154453038 -27962204 + FLAM_C SINE Alu 35 130 -13 219 171 26 26 chr6 154453061 154453137 -27962105 + A-rich Low_complexity Low_complexity 5 80 0 253 316 20 20 chr6 154454715 154454813 -27960429 + MIR SINE MIR 33 130 -78 * 450 252 19 0 chr6 154454811 154454918 -27960324 + L2 LINE L2 3205 3313 0 234 204 0 23 chr6 154455436 154455480 -27959762 + L2 LINE L2 3224 3266 -6 225 0 0 0 chr6 154456784 154456809 -27958433 + (T)n Simple_repeat Simple_repeat 1 25 0 324 287 147 0 chr6 154456862 154456998 -27958244 - L2 LINE L2 -9 3304 3149 345 309 97 30 chr6 154457583 154457825 -27957417 - MIR SINE MIR -8 254 1 1316 195 50 43 chr6 154458003 154458326 -27956916 - MER2 DNA MER2_type -19 326 2 733 111 0 0 chr6 154458469 154458577 -27956665 - AluSg/x SINE Alu -9 301 194 222 128 0 0 chr6 154460779 154460818 -27954424 + (TG)n Simple_repeat Simple_repeat 2 40 0 372 264 11 11 chr6 154461592 154461683 -27953559 + MIR SINE MIR 66 156 -106 340 325 0 0 chr6 154462991 154463105 -27952137 + LTR16A LTR ERVL 227 340 -110 257 321 45 18 chr6 154463522 154463634 -27951608 - MIR SINE MIR -71 137 23 22 35 0 0 chr6 154464019 154464048 -27951194 + AT_rich Low_complexity Low_complexity 1 29 0 1927 158 3 3 chr6 154466831 154467129 -27948113 + AluJo SINE Alu 2 299 -13 559 251 98 10 chr6 154467794 154467997 -27947245 - L1ME3 LINE L1 -7 6155 5935 2083 124 0 3 chr6 154468268 154468566 -27946676 + AluSq SINE Alu 1 297 -16 276 170 0 0 chr6 154468566 154468619 -27946623 + (TA)n Simple_repeat Simple_repeat 2 54 0 320 299 213 28 chr6 154469121 154469375 -27945867 - L2 LINE L2 -818 2496 2196 289 255 60 71 chr6 154469379 154469563 -27945679 - MER112 DNA MER1_type -6 254 73 361 220 30 15 chr6 154469688 154469820 -27945422 + (TA)n Simple_repeat Simple_repeat 1 134 0 185 62 0 31 chr6 154469894 154469926 -27945316 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 906 272 74 40 chr6 154469932 154469969 -27945273 - L2 LINE L2 -1135 2179 2145 2962 115 26 2 chr6 154469969 154470421 -27944821 + MER4C LTR ERV1 3 465 0 906 272 74 40 chr6 154470421 154470492 -27944750 - L2 LINE L2 -1169 2145 2078 2090 196 83 34 chr6 154470492 154470988 -27944254 + MLT2B1 LTR ERVL 1 520 0 906 272 74 40 chr6 154470988 154471283 -27943959 - L2 LINE L2 -1236 2078 1761 29 0 0 0 chr6 154471333 154471362 -27943880 + AT_rich Low_complexity Low_complexity 1 29 0 227 236 0 0 chr6 154471454 154471509 -27943733 + MER117 DNA MER1_type 40 94 -103 2209 120 3 0 chr6 154471732 154472040 -27943202 + AluY SINE Alu 1 309 -2 1805 198 37 6 chr6 154472140 154472494 -27942748 + MLT1A1 LTR MaLR 1 365 0 2636 110 8 3 chr6 154472873 154473246 -27941996 + THE1C LTR MaLR 1 375 0 10225 121 33 4 chr6 154473246 154474782 -27940460 + THE1C-int LTR MaLR 1 1580 0 2706 97 14 3 chr6 154474782 154475153 -27940089 + THE1C LTR MaLR 1 375 0 240 271 215 19 chr6 154475339 154475446 -27939796 - MIR SINE MIR -57 205 78 272 263 141 0 chr6 154477321 154477420 -27937822 - L1MC5 LINE L1 -46 7915 7803 827 234 74 8 chr6 154477601 154477857 -27937385 - L1MC5 LINE L1 -727 7234 6962 1741 173 16 10 chr6 154477965 154478272 -27936970 - AluJb SINE Alu -3 309 1 1958 297 105 38 chr6 154478278 154479846 -27935396 - L1MC4a LINE L1 -881 6927 5254 2357 76 0 3 chr6 154480168 154480470 -27934772 + AluY SINE Alu 1 301 -10 21 89 0 0 chr6 154481752 154481808 -27933434 + AT_rich Low_complexity Low_complexity 1 56 0 898 271 96 87 chr6 154482270 154483373 -27931869 + L1MEd LINE L1 11 1180 -5130 541 0 29 0 chr6 154483373 154483442 -27931800 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 898 271 96 87 chr6 154483442 154483922 -27931320 + L1MEd LINE L1 1180 1655 -4655 14107 170 12 35 chr6 154484127 154485539 -27929703 + L1MA2 LINE L1 14 1457 -6266 2320 102 0 0 chr6 154485539 154485842 -27929400 + AluSp SINE Alu 1 303 -10 14107 170 12 35 chr6 154485842 154488786 -27926456 + L1MA2 LINE L1 1457 4466 -3257 2178 123 3 7 chr6 154488786 154489094 -27926148 - AluSp SINE Alu -6 307 1 14107 170 12 35 chr6 154489094 154492071 -27923171 + L1MA2 LINE L1 4466 7481 -242 13041 100 9 43 chr6 154492070 154494457 -27920785 + L1PA8 LINE L1 1 2390 -4071 * 11642 94 23 56 chr6 154494458 154496944 -27918298 + L1PA8 LINE L1 4003 6486 -1 1405 91 35 126 chr6 154496945 154497150 -27918092 + L1MA2 LINE L1 7465 7687 -36 591 56 0 0 chr6 154497150 154497222 -27918020 + tRNA-Gln-CAA tRNA tRNA 1 72 -3 1405 91 35 126 chr6 154497222 154497240 -27918002 + L1MA2 LINE L1 7687 7705 -18 2153 113 10 0 chr6 154497240 154497531 -27917711 + AluSp SINE Alu 1 294 -19 2306 94 0 7 chr6 154497536 154497835 -27917407 + AluSc SINE Alu 1 297 -12 1405 91 35 126 chr6 154497835 154497889 -27917353 + L1MA2 LINE L1 7709 7723 0 10492 168 27 7 chr6 154497893 154498477 -27916765 + L1MA3 LINE L1 3073 3644 -2661 234 62 0 0 chr6 154498477 154498509 -27916733 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 10492 168 27 7 chr6 154498509 154501089 -27914153 + L1MA3 LINE L1 3644 6305 0 21 36 0 0 chr6 154501089 154501117 -27914125 + AT_rich Low_complexity Low_complexity 1 28 0 239 233 0 0 chr6 154501214 154501257 -27913985 + (CA)n Simple_repeat Simple_repeat 2 44 0 272 343 30 0 chr6 154501295 154501560 -27913682 + L1M4 LINE L1 2115 2387 -3759 408 244 0 12 chr6 154501646 154501732 -27913510 + MLT1D LTR MaLR 306 390 -115 2945 247 56 28 chr6 154501767 154502566 -27912676 - MER21B LTR ERV1 -30 833 12 366 224 112 0 chr6 154502615 154502722 -27912520 + MLT1D LTR MaLR 387 505 0 354 316 83 23 chr6 154502725 154502941 -27912301 + L1ME LINE L1 5341 5581 -589 2149 123 3 0 chr6 154502941 154503241 -27912001 + AluSq SINE Alu 1 301 -12 354 316 83 23 chr6 154503241 154503325 -27911917 + L1ME LINE L1 5581 5659 -511 1289 254 54 20 chr6 154503339 154503689 -27911553 - MER21B LTR ERV1 -51 812 451 6498 192 80 33 chr6 154504050 154505756 -27909486 - LTR49-int LTR ERV1 -694 4242 2458 381 263 13 53 chr6 154505755 154505907 -27909335 - LTR49-int LTR ERV1 -2613 2510 2365 * 2315 94 7 7 chr6 154505916 154506224 -27909018 - AluSc SINE Alu -1 308 1 1251 216 81 48 chr6 154506313 154506773 -27908469 - LTR49-int LTR ERV1 -3072 1864 1380 2269 91 3 13 chr6 154506773 154507080 -27908162 - AluSx SINE Alu -8 304 1 1251 216 81 48 chr6 154507080 154507197 -27908045 - LTR49-int LTR ERV1 -3556 1380 1268 884 228 31 47 chr6 154507204 154507458 -27907784 + Tigger3b DNA MER2_type 6 255 -976 1084 169 161 8 chr6 154507458 154507707 -27907535 + LOR1b LTR ERV1 2 288 -173 * 4014 161 97 4 chr6 154507705 154508513 -27906729 + Tigger3b DNA MER2_type 279 1162 -69 914 237 40 39 chr6 154508513 154508887 -27906355 - LTR38 LTR ERV1 0 556 137 394 192 0 64 chr6 154509019 154509097 -27906145 + Tigger3b DNA MER2_type 1169 1241 0 575 168 79 89 chr6 154509158 154509290 -27905952 - LTR49-int LTR ERV1 -3708 1228 1097 2118 131 129 26 chr6 154509290 154509361 -27905881 - MSTA LTR MaLR 0 428 366 2160 115 0 7 chr6 154509361 154509656 -27905586 + AluSx SINE Alu 1 293 -19 2118 131 129 26 chr6 154509656 154509972 -27905270 - MSTA LTR MaLR -62 366 1 575 168 79 89 chr6 154509972 154510029 -27905213 - LTR49-int LTR ERV1 -3839 1097 1041 892 188 0 7 chr6 154510162 154510311 -27904931 - MER8 DNA MER2_type 0 239 92 928 205 32 23 chr6 154510376 154510670 -27904572 - MER34C LTR ERV1 -185 400 59 345 263 0 32 chr6 154510681 154510776 -27904466 - LTR49-int LTR ERV1 -3689 2642 2551 2233 88 3 16 chr6 154510863 154511170 -27904072 - AluY SINE Alu -8 303 1 198 279 96 39 chr6 154512806 154512910 -27902332 - MIR SINE MIR -117 145 36 276 222 0 0 chr6 154513198 154513252 -27901990 - MER34C LTR ERV1 -473 112 59 1658 183 5 73 chr6 154514240 154514612 -27900630 + MER7A DNA MER2_type 2 346 0 25 0 0 0 chr6 154515264 154515289 -27899953 + AT_rich Low_complexity Low_complexity 1 25 0 35 0 0 0 chr6 154515864 154515899 -27899343 + AT_rich Low_complexity Low_complexity 1 35 0 282 103 59 29 chr6 154516083 154516151 -27899091 + CT-rich Low_complexity Low_complexity 1 70 0 316 324 83 0 chr6 154516628 154516773 -27898469 + MIR SINE MIR 68 224 -38 * 447 240 41 16 chr6 154516757 154516878 -27898364 + L2 LINE L2 3147 3270 -2 1719 170 3 10 chr6 154517833 154518127 -27897115 + AluJo SINE Alu 1 292 -20 242 300 14 14 chr6 154518637 154518707 -27896535 - L2 LINE L2 -10 3303 3234 309 272 9 88 chr6 154519363 154519477 -27895765 - MIR SINE MIR -70 192 88 212 351 49 3 chr6 154520543 154520679 -27894563 - MIR SINE MIR -49 159 15 2319 98 0 0 chr6 154522335 154522642 -27892600 + AluSc SINE Alu 1 307 -2 293 270 100 10 chr6 154522669 154522769 -27892473 + MIR SINE MIR 64 172 -90 282 280 80 24 chr6 154523883 154524008 -27891234 + MIR SINE MIR 117 248 -14 339 348 58 22 chr6 154526324 154526462 -27888780 - L3 LINE CR1 -39 1538 1396 378 272 31 73 chr6 154526501 154526621 -27888621 + MIR SINE MIR 67 190 -72 2188 91 0 63 chr6 154526621 154526939 -27888303 - AluSq SINE Alu -15 298 1 378 272 31 73 chr6 154526939 154526957 -27888285 + MIR SINE MIR 190 207 -55 1895 117 0 4 chr6 154526957 154527214 -27888028 + AluSg SINE Alu 46 301 -9 378 272 31 73 chr6 154527214 154527265 -27887977 + MIR SINE MIR 207 249 -13 403 282 45 26 chr6 154527860 154528016 -27887226 - L1MEd LINE L1 -5710 409 251 182 392 0 29 chr6 154528242 154528344 -27886898 - L3 LINE CR1 -184 1393 1295 453 330 59 18 chr6 154528363 154528584 -27886658 - L3 LINE CR1 -431 1146 917 236 362 21 7 chr6 154529691 154529832 -27885410 + MIR3 SINE MIR 55 197 -11 23 0 0 0 chr6 154529839 154529862 -27885380 + AT_rich Low_complexity Low_complexity 1 23 0 274 296 5 140 chr6 154530142 154530328 -27884914 - MER5A DNA MER1_type -1 188 28 233 296 50 35 chr6 154530594 154530912 -27884330 + L1M4 LINE L1 2717 3039 -3107 693 128 0 0 chr6 154531621 154531730 -27883512 - L1PB1 LINE L1 -4 6147 6039 2146 223 48 30 chr6 154532115 154532658 -27882584 + MER68 LTR ERV1 1 553 -9 693 311 44 8 chr6 154532866 154533117 -27882125 - MIR SINE MIR -2 260 1 206 143 0 24 chr6 154533538 154533580 -27881662 + (TC)n Simple_repeat Simple_repeat 2 42 0 343 83 33 0 chr6 154533613 154533673 -27881569 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 510 314 4 39 chr6 154533702 154533957 -27881285 + L1MEc LINE L1 396 641 -5755 1722 236 82 37 chr6 154533961 154534882 -27880360 + L1MEc LINE L1 1372 2334 -4062 1783 156 130 36 chr6 154534883 154535234 -27880008 + MSTA LTR MaLR 1 394 -34 2363 111 0 0 chr6 154535234 154535540 -27879702 - AluSq SINE Alu -7 306 1 1783 156 130 36 chr6 154535540 154535579 -27879663 + MSTA LTR MaLR 394 428 0 5224 136 1 2 chr6 154535603 154536456 -27878786 + L1PA15 LINE L1 5308 6159 -6 2281 248 96 12 chr6 154536450 154537926 -27877316 + L1MEc LINE L1 2303 3987 -2228 * 433 284 59 34 chr6 154538317 154538684 -27876558 - MLT1J LTR MaLR -158 457 1 1404 109 14 54 chr6 154539599 154539820 -27875422 + AluSg/x SINE Alu 78 289 -23 264 330 26 52 chr6 154540070 154540185 -27875057 + MIR SINE MIR 34 145 -63 331 330 108 19 chr6 154540564 154540776 -27874466 - MIR SINE MIR -12 250 20 312 27 0 0 chr6 154540957 154540994 -27874248 + (CA)n Simple_repeat Simple_repeat 2 38 0 364 279 85 81 chr6 154541584 154541831 -27873411 - MIR SINE MIR -2 260 13 181 262 143 12 chr6 154542754 154542838 -27872404 + MIR SINE MIR 86 180 -82 316 245 20 13 chr6 154543597 154543748 -27871494 + CT-rich Low_complexity Low_complexity 3 154 0 271 212 24 12 chr6 154543996 154544081 -27871161 + CT-rich Low_complexity Low_complexity 3 88 0 1779 143 19 10 chr6 154546760 154547067 -27868175 - L1PA15 LINE L1 -2 6163 5854 1012 215 23 35 chr6 154547621 154547783 -27867459 - MLT1C LTR MaLR 0 467 308 2101 137 30 33 chr6 154547783 154548148 -27867094 + THE1B LTR MaLR 1 364 0 1012 215 23 35 chr6 154548148 154548241 -27867001 - MLT1C LTR MaLR -159 308 215 651 178 105 47 chr6 154548376 154548448 -27866794 - MLT1C LTR MaLR -263 204 138 1889 170 16 14 chr6 154548448 154548812 -27866430 - MLT1A1 LTR MaLR 0 365 1 651 178 105 47 chr6 154548812 154548930 -27866312 - MLT1C LTR MaLR -329 138 3 1324 159 65 59 chr6 154549531 154549902 -27865340 + MER93b LTR ERV1 1 373 0 326 256 0 0 chr6 154550017 154550095 -27865147 + L1MC4 LINE L1 6614 6691 -1351 1703 195 10 0 chr6 154550814 154551112 -27864130 + AluJb SINE Alu 1 301 -11 985 171 5 30 chr6 154551187 154551386 -27863856 + MER3 DNA MER1_type 1 194 -15 5279 89 17 3 chr6 154551986 154552741 -27862501 + MER4E LTR ERV1 1 766 0 848 182 6 0 chr6 154553401 154553577 -27861665 + CT-rich Low_complexity Low_complexity 4 180 0 22 0 0 0 chr6 154553625 154553647 -27861595 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 154554092 154554129 -27861113 + AT_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr6 154554441 154554462 -27860780 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 4667 61 8 0 chr6 154554641 154555245 -27859997 - L1PA8 LINE L1 0 6172 5564 204 307 67 0 chr6 154555352 154555427 -27859815 + L2 LINE L2 3148 3227 -45 850 176 16 90 chr6 154556191 154556435 -27858807 - MER110A LTR ERV1 -234 234 9 2398 73 0 10 chr6 154556574 154556888 -27858354 - AluY SINE Alu 0 311 1 22 56 0 0 chr6 154557378 154557414 -27857828 + AT_rich Low_complexity Low_complexity 1 36 0 183 100 0 0 chr6 154557567 154557597 -27857645 + (CAG)n Simple_repeat Simple_repeat 2 31 0 2260 84 10 0 chr6 154557607 154557906 -27857336 - AluY SINE Alu -9 302 1 406 330 48 22 chr6 154558051 154558281 -27856961 - MER102a DNA MER1_type 0 330 95 277 233 83 50 chr6 154558722 154558842 -27856400 + MER5A DNA MER1_type 54 177 -12 1076 165 33 0 chr6 154558883 154559065 -27856177 - MER5A DNA MER1_type 0 189 2 281 238 32 0 chr6 154559362 154559425 -27855817 - L2 LINE L2 -1 3312 3248 196 233 0 0 chr6 154559460 154559503 -27855739 - L2 LINE L2 -4 3309 3267 29 0 0 0 chr6 154560391 154560420 -27854822 + AT_rich Low_complexity Low_complexity 1 29 0 2564 160 4 32 chr6 154560546 154560942 -27854300 + MER66B LTR ERV1 1 382 -104 2482 64 0 0 chr6 154560942 154561237 -27854005 + AluY SINE Alu 1 295 -16 2564 160 4 32 chr6 154561237 154561334 -27853908 + MER66B LTR ERV1 382 480 -6 196 353 59 0 chr6 154561363 154561448 -27853794 - MIR3 SINE MIR -30 178 89 234 231 121 11 chr6 154562112 154562203 -27853039 + L2 LINE L2 2657 2757 -557 * 246 218 8 95 chr6 154562193 154562299 -27852943 + MIR SINE MIR 63 156 -73 283 404 33 7 chr6 154562511 154562662 -27852580 + L2 LINE L2 3109 3263 -9 1105 260 151 37 chr6 154562774 154563232 -27852010 - L2 LINE L2 0 3313 2804 192 319 50 56 chr6 154563243 154563403 -27851839 + L2 LINE L2 539 697 -2617 2047 100 0 75 chr6 154563419 154563740 -27851502 + AluSc SINE Alu 1 297 -12 614 301 184 16 chr6 154564356 154564808 -27850434 - L1MC4a LINE L1 -1949 5859 5332 180 0 0 0 chr6 154565975 154565995 -27849247 + (TTG)n Simple_repeat Simple_repeat 2 21 0 449 315 56 31 chr6 154566195 154566621 -27848621 + L2 LINE L2 1612 2047 -1267 197 276 0 105 chr6 154567509 154567585 -27847657 + L2 LINE L2 3122 3189 -83 197 206 0 0 chr6 154567570 154567604 -27847638 + MIR SINE MIR 213 246 -16 206 239 22 0 chr6 154567692 154567738 -27847504 + MIR SINE MIR 99 145 -63 503 294 103 50 chr6 154568762 154569269 -27845973 - L2 LINE L2 -1 3312 2777 1632 213 106 82 chr6 154569537 154570342 -27844900 - LTR1B LTR ERV1 0 826 1 196 365 12 0 chr6 154570359 154570444 -27844798 + MIR SINE MIR 171 256 -6 1708 147 33 11 chr6 154572930 154573227 -27842015 + AluSx SINE Alu 5 307 0 25 0 0 0 chr6 154574701 154574726 -27840516 + AT_rich Low_complexity Low_complexity 1 25 0 194 231 0 0 chr6 154575163 154575202 -27840040 + L2 LINE L2 3267 3305 -8 308 303 55 0 chr6 154578729 154578838 -27836404 - MIR3 SINE MIR -6 202 88 237 404 58 0 chr6 154579158 154579262 -27835980 + L2 LINE L2 3197 3306 -7 24 0 0 0 chr6 154579963 154579987 -27835255 + AT_rich Low_complexity Low_complexity 1 24 0 192 200 0 0 chr6 154581071 154581116 -27834126 + (CA)n Simple_repeat Simple_repeat 1 45 0 1878 204 62 32 chr6 154581375 154581876 -27833366 - LTR40a LTR ERVL 0 519 4 198 143 0 0 chr6 154582004 154582039 -27833203 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 718 286 135 23 chr6 154582549 154582933 -27832309 - MARNA DNA Mariner -25 561 135 196 283 22 33 chr6 154583332 154583365 -27831877 + MIR SINE MIR 117 149 -113 2160 98 7 7 chr6 154583365 154583662 -27831580 - AluSg SINE Alu -11 299 3 196 283 22 33 chr6 154583662 154583720 -27831522 + MIR SINE MIR 149 207 -55 1828 196 2 25 chr6 154586350 154586713 -27828529 - MLT2C1 LTR ERVL -39 515 1 281 360 0 0 chr6 154586737 154586826 -27828416 + L2 LINE L2 2550 2638 -676 660 323 57 20 chr6 154586828 154587128 -27828114 - MLT1I LTR MaLR -2 407 97 517 359 47 64 chr6 154587198 154587314 -27827928 + L2 LINE L2 2642 2758 -555 1585 214 47 80 chr6 154587314 154587370 -27827872 - MLT2B1 LTR ERVL 0 520 464 743 0 11 0 chr6 154587370 154587457 -27827785 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1585 214 47 80 chr6 154587457 154587938 -27827304 - MLT2B1 LTR ERVL -56 464 1 517 359 47 64 chr6 154587938 154588506 -27826736 + L2 LINE L2 2758 3312 -1 502 242 101 64 chr6 154589432 154589572 -27825670 - L1ME1 LINE L1 -49 6117 5965 768 186 0 0 chr6 154589572 154589701 -27825541 - FLAM_A SINE Alu 0 133 5 502 242 101 64 chr6 154589701 154589779 -27825463 - L1ME1 LINE L1 -201 5965 5891 707 292 50 17 chr6 154590381 154590621 -27824621 + MIR SINE MIR 8 255 -7 180 0 0 0 chr6 154590657 154590677 -27824565 + (T)n Simple_repeat Simple_repeat 1 20 0 259 258 15 0 chr6 154592665 154592731 -27822511 - MLT1K LTR MaLR -5 583 517 571 285 48 24 chr6 154593503 154593710 -27821532 + MIR SINE MIR 45 256 -6 237 33 0 0 chr6 154594441 154594471 -27820771 + (CA)n Simple_repeat Simple_repeat 2 31 0 303 382 8 15 chr6 154594620 154594751 -27820491 + L3 LINE CR1 1084 1213 -364 3120 63 0 2 chr6 154595042 154595441 -27819801 + L1PA7 LINE L1 5753 6150 -4 2264 101 0 16 chr6 154595718 154595896 -27819346 - AluSx SINE Alu -1 311 139 2409 81 0 0 chr6 154595896 154596203 -27819039 - AluY SINE Alu -2 309 3 2264 101 0 16 chr6 154596203 154596340 -27818902 - AluSx SINE Alu -173 139 1 1717 200 42 59 chr6 154597674 154597850 -27817392 + MLT1C LTR MaLR 2 179 -288 2061 106 29 0 chr6 154597850 154598170 -27817072 + AluSq SINE Alu 3 330 0 1717 200 42 59 chr6 154598170 154598466 -27816776 + MLT1C LTR MaLR 179 467 0 330 283 62 0 chr6 154598644 154598757 -27816485 - MER94 DNA DNA -13 121 2 2350 271 35 7 chr6 154600080 154600673 -27814569 + MLT2F LTR ERVL 1 610 -53 285 173 0 0 chr6 154600714 154600766 -27814476 + MLT2F LTR ERVL 612 663 0 540 0 0 0 chr6 154600806 154600866 -27814376 + (TC)n Simple_repeat Simple_repeat 2 61 0 234 0 0 0 chr6 154600865 154600891 -27814351 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 496 267 74 86 chr6 154600909 154601339 -27813903 - MLT1J1 LTR MaLR -9 437 13 23 78 0 0 chr6 154602956 154603007 -27812235 + AT_rich Low_complexity Low_complexity 1 51 0 204 359 156 4 chr6 154603042 154603298 -27811944 + L3 LINE CR1 787 1081 -496 374 0 22 0 chr6 154603388 154603434 -27811808 + (CA)n Simple_repeat Simple_repeat 1 47 0 480 280 90 72 chr6 154604140 154604356 -27810886 + L1MEc LINE L1 679 882 -5188 1862 125 24 21 chr6 154604356 154604643 -27810599 + AluSx SINE Alu 11 298 -14 480 280 90 72 chr6 154604643 154604851 -27810391 + L1MEc LINE L1 882 1085 -4985 546 302 22 6 chr6 154604882 154605061 -27810181 + MER58A DNA MER1_type 42 223 -1 860 279 58 35 chr6 154605223 154605829 -27809413 + L1MEc LINE L1 2125 2744 -3336 2913 183 33 18 chr6 154605884 154606084 -27809158 - MER68 LTR ERV1 -2 560 364 2382 219 27 39 chr6 154606084 154606645 -27808597 - MLT2B3 LTR ERVL 0 554 1 2913 183 33 18 chr6 154606645 154606996 -27808246 - MER68 LTR ERV1 -198 364 1 1832 261 119 15 chr6 154606999 154607947 -27807295 + L1MEc LINE L1 2824 3870 -2210 1268 223 80 50 chr6 154608400 154608708 -27806534 + MLT1A2 LTR MaLR 1 298 -76 2128 90 38 3 chr6 154608708 154608996 -27806246 + AluSx SINE Alu 1 298 -14 2210 92 0 3 chr6 154608999 154609314 -27805928 + AluSq SINE Alu 1 314 0 1268 223 80 50 chr6 154609314 154609363 -27805879 + MLT1A2 LTR MaLR 299 374 0 1768 202 24 52 chr6 154610096 154610168 -27805074 - MLT2D LTR ERVL 0 414 342 279 0 0 0 chr6 154610168 154610199 -27805043 + (GA)n Simple_repeat Simple_repeat 2 32 0 1768 202 24 52 chr6 154610199 154610552 -27804690 - MLT2D LTR ERVL -72 342 1 2333 156 19 66 chr6 154610714 154610938 -27804304 + MER88 LTR ERVL 1 191 -273 195 42 0 0 chr6 154610938 154610962 -27804280 + (GA)n Simple_repeat Simple_repeat 1 24 0 2333 156 19 66 chr6 154610962 154611224 -27804018 + MER88 LTR ERVL 191 464 0 291 247 39 0 chr6 154611233 154611310 -27803932 + MLT1J2 LTR MaLR 67 146 -304 32183 43 3 0 chr6 154612015 154616806 -27798436 - L1PA5 LINE L1 0 6154 1351 288 284 65 48 chr6 154616935 154617227 -27798015 + L1MEc LINE L1 1970 2266 -4130 490 286 35 10 chr6 154617552 154617755 -27797487 - L1ME3A LINE L1 -219 5951 5744 280 271 183 44 chr6 154617773 154618112 -27797130 - L1ME3A LINE L1 -505 5657 5272 499 286 117 23 chr6 154618238 154618630 -27796612 - L1ME3A LINE L1 -1842 4304 3876 2127 165 20 3 chr6 154618714 154619065 -27796177 - MLT1A1 LTR MaLR 0 365 9 485 294 25 40 chr6 154619384 154619585 -27795657 + L2 LINE L2 3110 3307 -6 207 0 0 0 chr6 154619688 154619711 -27795531 + (CA)n Simple_repeat Simple_repeat 2 24 0 255 61 0 0 chr6 154619711 154619744 -27795498 + (GA)n Simple_repeat Simple_repeat 1 33 0 2111 113 37 38 chr6 154619794 154619837 -27795405 - MLT2A1 LTR ERVL 0 453 411 288 0 0 0 chr6 154619837 154619869 -27795373 + (TA)n Simple_repeat Simple_repeat 2 33 0 2111 113 37 38 chr6 154619869 154619925 -27795317 - MLT2A1 LTR ERVL -42 411 356 468 0 0 0 chr6 154619925 154619977 -27795265 + (TA)n Simple_repeat Simple_repeat 2 53 0 2111 113 37 38 chr6 154619977 154620336 -27794906 - MLT2A1 LTR ERVL -97 356 30 1503 263 49 20 chr6 154620344 154620838 -27794404 + L1ME3A LINE L1 5652 6159 -11 629 212 65 147 chr6 154621462 154621718 -27793524 + MER34C LTR ERV1 35 238 -347 997 190 0 0 chr6 154621718 154621881 -27793361 - FRAM SINE Alu -2 164 2 629 212 65 147 chr6 154621881 154622087 -27793155 + MER34C LTR ERV1 238 459 -126 347 232 32 21 chr6 154622167 154622262 -27792980 + MER34 LTR ERV1 447 542 0 185 362 16 87 chr6 154622287 154622472 -27792770 - L2 LINE L2 -78 3194 3023 188 261 148 34 chr6 154622885 154622973 -27792269 - L2 LINE L2 -5 3308 3211 4851 140 40 3 chr6 154623041 154623796 -27791446 + LTR39 LTR ERV1 1 783 0 204 40 0 0 chr6 154625045 154625070 -27790172 + (CA)n Simple_repeat Simple_repeat 2 26 0 2619 86 11 0 chr6 154629170 154629519 -27785723 - THE1A LTR MaLR -2 353 1 24 0 0 0 chr6 154629577 154629601 -27785641 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr6 154630250 154630274 -27784968 + (TG)n Simple_repeat Simple_repeat 2 25 0 2165 103 0 0 chr6 154631099 154631380 -27783862 + THE1B LTR MaLR 84 364 0 6198 157 13 10 chr6 154631380 154633066 -27782176 - L1P4 LINE L1 -371 5792 4103 337 263 79 54 chr6 154633476 154633716 -27781526 - L1MC4a LINE L1 -1747 6061 5816 816 246 39 134 chr6 154634226 154634816 -27780426 - L1MC4a LINE L1 -2019 5789 5256 320 289 55 43 chr6 154634835 154635070 -27780172 - L1MC4a LINE L1 -916 5230 4993 181 375 0 0 chr6 154635319 154635375 -27779867 + MIR SINE MIR 45 100 -162 237 308 121 0 chr6 154636086 154636177 -27779065 - L3b LINE CR1 -263 1320 1219 459 302 55 44 chr6 154636589 154636771 -27778471 - MIR3 SINE MIR 0 208 25 28 29 0 0 chr6 154636940 154636975 -27778267 + AT_rich Low_complexity Low_complexity 1 35 0 5206 66 3 0 chr6 154636975 154637646 -27777596 - L1PA5 LINE L1 -3 6151 5479 2533 58 0 0 chr6 154637646 154638069 -27777173 + L1PA5 LINE L1 5052 5474 -680 260 253 139 0 chr6 154641130 154641209 -27774033 + MIR SINE MIR 47 136 -126 2017 149 0 10 chr6 154641226 154641534 -27773708 - AluSx SINE Alu -7 305 1 817 186 160 51 chr6 154642116 154642382 -27772860 + MLT1H LTR MaLR 2 267 -288 292 261 43 0 chr6 154642475 154642567 -27772675 + MLT1H LTR MaLR 450 545 -4 443 252 126 33 chr6 154643215 154643429 -27771813 - Charlie8 DNA MER1_type -2152 265 32 193 348 0 43 chr6 154644126 154644195 -27771047 - L2 LINE L2 -6 3266 3201 943 350 81 38 chr6 154644438 154644522 -27770720 + L2 LINE L2 87 166 -3148 1444 151 4 17 chr6 154644522 154644761 -27770481 + MER46A DNA MER2_type 1 236 0 943 350 81 38 chr6 154644761 154645102 -27770140 + L2 LINE L2 166 491 -2823 182 37 37 0 chr6 154645102 154645129 -27770113 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 943 350 81 38 chr6 154645129 154645466 -27769776 + L2 LINE L2 491 883 -2431 777 213 48 34 chr6 154645516 154645856 -27769386 + LTR35 LTR ERV1 186 618 0 396 287 26 75 chr6 154646225 154646490 -27768752 - L1ME3A LINE L1 -214 5956 5705 2397 150 16 9 chr6 154646554 154646988 -27768254 + LTR23 LTR ERV1 1 437 0 621 300 141 19 chr6 154647158 154647958 -27767284 - L1ME3A LINE L1 -2497 3649 2752 543 361 80 13 chr6 154647976 154648289 -27766953 + L2 LINE L2 1986 2319 -995 446 254 18 18 chr6 154648374 154648488 -27766754 + MLT1D LTR MaLR 77 190 -315 963 226 17 17 chr6 154648533 154648768 -27766474 + MLT1D LTR MaLR 268 502 -3 899 299 116 22 chr6 154648808 154649310 -27765932 + L2 LINE L2 2316 2864 -450 955 48 65 0 chr6 154649609 154649777 -27765465 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 302 191 32 32 chr6 154649785 154649848 -27765394 - L1M1 LINE L1 -7499 66 4 221 107 18 54 chr6 154649848 154649904 -27765338 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 758 228 62 0 chr6 154649910 154650103 -27765139 + MER3 DNA MER1_type 5 209 0 313 302 10 68 chr6 154650127 154650319 -27764923 + L2 LINE L2 3078 3258 -55 353 305 84 7 chr6 154650421 154650575 -27764667 - MIR SINE MIR 0 262 97 995 229 33 0 chr6 154650757 154650967 -27764275 + MER58A DNA MER1_type 4 220 -4 1241 83 6 0 chr6 154651075 154651232 -27764010 + AluSp SINE Alu 1 158 -155 27 49 0 0 chr6 154651297 154651338 -27763904 + AT_rich Low_complexity Low_complexity 1 41 0 598 252 114 14 chr6 154651952 154652162 -27763080 + MIR SINE MIR 8 238 -24 261 0 0 0 chr6 154652261 154652290 -27762952 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 371 272 36 72 chr6 154652568 154652763 -27762479 + MIR SINE MIR 33 220 -42 188 61 61 0 chr6 154653618 154653651 -27761591 + GA-rich Low_complexity Low_complexity 2 36 0 28 29 0 0 chr6 154654784 154654819 -27760423 + AT_rich Low_complexity Low_complexity 1 35 0 245 269 15 15 chr6 154654827 154654894 -27760348 - L2 LINE L2 -2 3311 3245 1297 313 91 43 chr6 154654952 154655610 -27759632 - MER115 DNA AcHobo 0 693 4 2437 125 11 19 chr6 154655640 154656007 -27759235 - THE1B LTR MaLR 0 364 1 2163 65 59 3 chr6 154656393 154656683 -27758559 + AluY SINE Alu 1 306 -5 22 56 0 0 chr6 154656988 154657024 -27758218 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 154657079 154657101 -27758141 + AT_rich Low_complexity Low_complexity 1 22 0 2279 97 0 3 chr6 154657426 154657725 -27757517 - AluSq SINE Alu -15 298 1 236 373 45 34 chr6 154659205 154659382 -27755860 + L2 LINE L2 2766 2944 -370 274 294 40 24 chr6 154660580 154660706 -27754536 + ERVL LTR ERVL 4833 4960 -804 1172 296 24 9 chr6 154660716 154661057 -27754185 - LTR16A LTR ERVL -2 448 103 616 264 0 0 chr6 154661386 154661526 -27753716 - MER5A DNA MER1_type -29 160 21 279 227 53 0 chr6 154662228 154662303 -27752939 + MLT1K LTR MaLR 510 588 0 368 296 66 25 chr6 154662578 154662774 -27752468 + L2 LINE L2 3013 3216 -97 502 103 26 0 chr6 154663281 154663359 -27751883 + MADE1 DNA Mariner 1 80 0 2061 214 67 18 chr6 154665434 154665925 -27749317 - LTR40a LTR ERVL -4 515 1 298 355 95 12 chr6 154666006 154666175 -27749067 + L2 LINE L2 3090 3272 0 931 296 125 32 chr6 154666382 154667007 -27748235 - Charlie8 DNA MER1_type -1734 683 1 3270 155 41 51 chr6 154667038 154667721 -27747521 - LTR1 LTR ERV1 -109 676 1 2072 135 41 36 chr6 154668251 154668613 -27746629 + THE1B LTR MaLR 1 364 0 453 344 66 6 chr6 154668613 154668752 -27746490 + MIR SINE MIR 6 160 -102 212 83 0 28 chr6 154668752 154668788 -27746454 + (TAA)n Simple_repeat Simple_repeat 2 36 0 453 344 66 6 chr6 154668788 154668831 -27746411 + MIR SINE MIR 160 199 -63 386 156 31 31 chr6 154669936 154670096 -27745146 + (TA)n Simple_repeat Simple_repeat 2 161 0 23 33 0 0 chr6 154670131 154670161 -27745081 + AT_rich Low_complexity Low_complexity 1 30 0 2792 80 3 5 chr6 154670655 154671032 -27744210 + L1PA13 LINE L1 5772 6147 -16 242 303 77 41 chr6 154671108 154671303 -27743939 + HAL1 LINE L1 1352 1553 -954 22 0 0 0 chr6 154671840 154671862 -27743380 + AT_rich Low_complexity Low_complexity 1 22 0 295 286 45 34 chr6 154671864 154672042 -27743200 + L1MC4a LINE L1 2335 2514 -3632 2265 100 9 9 chr6 154672471 154672802 -27742440 + L1PA11 LINE L1 5843 6173 -1 480 217 20 40 chr6 154672803 154672926 -27742316 + L1MC4a LINE L1 3141 3260 -2886 1286 167 118 76 chr6 154672926 154673358 -27741884 - LTR7 LTR ERV1 0 450 1 480 217 20 40 chr6 154673358 154673432 -27741810 + L1MC4a LINE L1 3260 3334 -2812 1966 117 3 66 chr6 154673457 154673774 -27741468 - AluSx SINE Alu -15 297 1 318 295 70 70 chr6 154673775 154674060 -27741182 + L1MC/D LINE L1 5553 5837 -1971 35 63 0 0 chr6 154674106 154674169 -27741073 + AT_rich Low_complexity Low_complexity 1 63 0 227 228 9 44 chr6 154674262 154674376 -27740866 + (TAAA)n Simple_repeat Simple_repeat 4 113 0 4734 121 24 31 chr6 154674377 154675161 -27740081 - MER4E LTR ERV1 0 779 1 3174 143 78 14 chr6 154675283 154675858 -27739384 + LTR9 LTR ERV1 1 612 0 1780 121 16 64 chr6 154675875 154676188 -27739054 + AluSc SINE Alu 3 300 -9 30 0 0 0 chr6 154676277 154676307 -27738935 + AT_rich Low_complexity Low_complexity 1 30 0 1839 166 17 0 chr6 154676430 154676719 -27738523 + AluSx SINE Alu 1 294 -18 781 349 73 30 chr6 154676863 154678712 -27736530 + L1MC4a LINE L1 3724 5655 -773 238 250 77 54 chr6 154678792 154678960 -27736282 + L1MC4a LINE L1 5781 5952 -1856 672 139 0 46 chr6 154679079 154679187 -27736055 + AluSc SINE Alu 190 292 -17 204 40 0 0 chr6 154679214 154679239 -27736003 + (TG)n Simple_repeat Simple_repeat 2 26 0 366 325 36 24 chr6 154679266 154679432 -27735810 + L1M4 LINE L1 2337 2504 -3642 324 297 36 12 chr6 154679642 154679807 -27735435 + L1M4 LINE L1 2749 2917 -3229 1069 233 26 15 chr6 154679846 154680112 -27735130 - L1PA16 LINE L1 -4 6162 5894 21 0 0 0 chr6 154680246 154680267 -27734975 + AT_rich Low_complexity Low_complexity 1 21 0 359 320 98 13 chr6 154680385 154680538 -27734704 - MIR3 SINE MIR -11 197 32 193 218 32 137 chr6 154680582 154680706 -27734536 + MIR SINE MIR 97 207 -55 287 177 16 0 chr6 154681010 154681072 -27734170 + (TA)n Simple_repeat Simple_repeat 1 63 0 356 337 65 15 chr6 154681235 154681434 -27733808 - L2 LINE L2 -3 3269 3061 997 235 113 79 chr6 154681517 154682012 -27733230 - MER39 LTR ERV1 0 707 56 236 250 26 13 chr6 154682376 154682452 -27732790 + MER5B DNA MER1_type 4 80 -98 396 302 52 52 chr6 154682520 154682692 -27732550 + MER5B DNA MER1_type 6 177 -1 388 279 65 52 chr6 154682809 154682963 -27732279 + MIR SINE MIR 1 154 -63 328 302 94 0 chr6 154683027 154683176 -27732066 - L2 LINE L2 -1304 2010 1848 279 173 0 0 chr6 154685024 154685076 -27730166 + (CA)n Simple_repeat Simple_repeat 2 53 0 1197 235 115 30 chr6 154685657 154686057 -27729185 - MER57B LTR ERV1 0 434 1 334 309 84 53 chr6 154687609 154687871 -27727371 - L1ME4a LINE L1 -118 6003 5734 898 281 88 15 chr6 154687874 154688202 -27727040 - MLT1I LTR MaLR -2 407 56 1867 214 43 115 chr6 154688367 154689116 -27726126 + LTR34 LTR ERV1 1 695 -4 22 35 0 0 chr6 154689303 154689332 -27725910 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr6 154689496 154689530 -27725712 + AT_rich Low_complexity Low_complexity 1 34 0 207 200 33 17 chr6 154689920 154689980 -27725262 + (TA)n Simple_repeat Simple_repeat 1 61 0 427 301 103 39 chr6 154690150 154690432 -27724810 - L1ME4a LINE L1 -242 5879 5580 617 226 34 32 chr6 154690470 154690724 -27724518 - MER52A LTR ERV1 -27 754 334 269 185 154 0 chr6 154690779 154690844 -27724398 - MER51A LTR ERV1 -352 282 208 259 280 0 0 chr6 154690837 154690912 -27724330 - LTR27 LTR ERV1 -419 217 143 * 319 236 38 18 chr6 154691016 154691127 -27724115 - MER61E LTR ERV1 -484 85 1 325 335 137 5 chr6 154691139 154691336 -27723906 - L1ME4a LINE L1 -546 5575 5353 490 269 60 13 chr6 154692394 154692628 -27722614 - L1ME LINE L1 -5094 976 732 652 260 47 25 chr6 154692658 154692935 -27722307 + L1ME2 LINE L1 2560 2842 -3304 * 1371 234 113 46 chr6 154692906 154693793 -27721449 + L1ME2 LINE L1 3122 4134 -2012 2635 234 36 10 chr6 154693840 154694510 -27720732 + L1ME2 LINE L1 5469 6155 -9 23 33 0 0 chr6 154694964 154694994 -27720248 + AT_rich Low_complexity Low_complexity 1 30 0 472 270 69 13 chr6 154695906 154696065 -27719177 - LTR16A1 LTR ERVL 0 457 290 2313 155 59 5 chr6 154696365 154696771 -27718471 - MSTA LTR MaLR 0 428 1 1026 280 101 5 chr6 154697391 154697769 -27717473 - LTR16A LTR ERVL 0 450 37 230 0 0 0 chr6 154698424 154698451 -27716791 - LTR38B LTR ERV1 -293 317 291 21 0 0 0 chr6 154698451 154698472 -27716770 + AT_rich Low_complexity Low_complexity 1 21 0 527 265 44 34 chr6 154700938 154701142 -27714100 + L1ME2 LINE L1 5958 6163 -1 722 299 36 72 chr6 154701248 154701583 -27713659 + L2 LINE L2 2717 3062 -251 4536 57 9 5 chr6 154701583 154702163 -27713079 - L1PA7 LINE L1 -8 6146 5565 722 299 36 72 chr6 154702163 154702258 -27712984 + L2 LINE L2 3062 3159 -154 1970 133 37 7 chr6 154702258 154702552 -27712690 - AluSx SINE Alu -9 303 1 722 299 36 72 chr6 154702552 154702735 -27712507 + L2 LINE L2 3159 3312 -1 230 125 25 0 chr6 154703038 154703078 -27712164 - MLT2D LTR ERVL 0 554 514 1517 178 71 58 chr6 154703099 154703464 -27711778 - MLT2D LTR ERVL -20 394 25 267 79 0 0 chr6 154703624 154703662 -27711580 + (TC)n Simple_repeat Simple_repeat 1 38 0 2500 214 70 24 chr6 154704097 154704773 -27710469 + MER72 LTR ERV1 1 909 -14 2101 135 0 0 chr6 154706880 154707183 -27708059 - AluY SINE Alu -8 303 1 524 332 27 33 chr6 154707530 154707936 -27707306 + MER4B-int LTR ERV1 157 3651 -3440 253 362 66 48 chr6 154709817 154710212 -27705030 + MER4B-int LTR ERV1 2141 2542 -2105 1592 161 14 34 chr6 154710219 154710510 -27704732 + AluJo SINE Alu 11 295 -17 295 226 0 128 chr6 154710791 154710893 -27704349 + MER4B-int LTR ERV1 3787 3875 -4245 273 30 0 0 chr6 154711651 154711684 -27703558 - AluY SINE Alu -257 45 13 1726 151 0 0 chr6 154711684 154711936 -27703306 + AluSx SINE Alu 47 298 -14 335 287 83 25 chr6 154712460 154712617 -27702625 + MER4B-int LTR ERV1 6172 6337 -421 411 376 35 4 chr6 154712712 154712938 -27702304 + MER70-int LTR ERVL 4569 4801 -222 258 176 78 0 chr6 154713005 154713056 -27702186 + MER4B-int LTR ERV1 6384 6438 -320 * 1323 203 0 4 chr6 154713052 154713284 -27701958 + MER4B-int LTR ERV1 6843 7073 -1047 2103 233 80 47 chr6 154713309 154714008 -27701234 + MER72 LTR ERV1 1 722 0 3484 221 105 8 chr6 154714798 154715857 -27699385 + L1MC4 LINE L1 6878 8038 -4 261 323 99 20 chr6 154715945 154716146 -27699096 - L1MC/D LINE L1 -2169 5639 5423 7016 91 10 34 chr6 154716159 154717284 -27697958 - L1MA1 LINE L1 -8 6294 5197 264 286 34 17 chr6 154717276 154717454 -27697788 - L1P4 LINE L1 -722 5444 5264 * 398 36 18 0 chr6 154719042 154719098 -27696144 + (CA)n Simple_repeat Simple_repeat 2 58 0 894 190 81 0 chr6 154719820 154719994 -27695248 + MER5A DNA MER1_type 1 188 -1 603 330 74 22 chr6 154721274 154721586 -27693656 + LTR33 LTR ERVL 11 338 -183 1524 182 148 0 chr6 154721746 154722064 -27693178 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr6 154722537 154722558 -27692684 + AT_rich Low_complexity Low_complexity 1 21 0 1232 203 126 95 chr6 154722641 154723158 -27692084 - MLT1F LTR MaLR -8 646 1 2084 109 14 3 chr6 154725000 154725294 -27689948 + AluSg SINE Alu 3 299 -11 231 292 15 0 chr6 154726749 154726814 -27688428 - L3 LINE CR1 -193 1384 1319 262 262 78 78 chr6 154731656 154731797 -27683445 + MLT1K LTR MaLR 37 177 -411 215 224 52 35 chr6 154732044 154732102 -27683140 + MIR SINE MIR 19 77 -131 183 327 0 0 chr6 154732368 154732423 -27682819 + MIR3 SINE MIR 151 205 -3 30 59 0 0 chr6 154732973 154733024 -27682218 + AT_rich Low_complexity Low_complexity 1 51 0 1581 177 106 66 chr6 154733749 154734128 -27681114 - MSTD LTR MaLR 0 396 3 428 301 117 20 chr6 154734578 154734957 -27680285 + L1MDa LINE L1 2364 2822 -3893 201 121 0 0 chr6 154735105 154735138 -27680104 + (TA)n Simple_repeat Simple_repeat 1 33 0 288 206 23 8 chr6 154735156 154735416 -27679826 + (TA)n Simple_repeat Simple_repeat 1 264 0 209 266 18 9 chr6 154737619 154737642 -27677600 + (TA)n Simple_repeat Simple_repeat 1 22 -88 2125 159 5 22 chr6 154737642 154738012 -27677230 + MLT1A1 LTR MaLR 1 364 -1 209 266 18 9 chr6 154738012 154738097 -27677145 + (TA)n Simple_repeat Simple_repeat 22 110 0 416 19 0 19 chr6 154738174 154738228 -27677014 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 1983 130 7 3 chr6 154738243 154738535 -27676707 - AluSx SINE Alu -19 293 1 186 43 0 0 chr6 154738692 154738715 -27676527 + (A)n Simple_repeat Simple_repeat 1 23 0 34 0 0 0 chr6 154739788 154739822 -27675420 + AT_rich Low_complexity Low_complexity 1 34 0 647 284 78 24 chr6 154740371 154740762 -27674480 - L2 LINE L2 -301 3012 2589 388 309 71 13 chr6 154740771 154741126 -27674116 - L1MDa LINE L1 -3712 2828 2455 23 33 0 0 chr6 154741281 154741311 -27673931 + AT_rich Low_complexity Low_complexity 1 30 0 298 346 69 25 chr6 154742358 154742517 -27672725 + L2 LINE L2 3142 3307 -6 2127 114 17 0 chr6 154742975 154743274 -27671968 + AluSq SINE Alu 1 304 -9 2326 83 0 3 chr6 154743378 154743679 -27671563 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr6 154743952 154743976 -27671266 + AT_rich Low_complexity Low_complexity 1 24 0 11034 146 34 19 chr6 154744459 154746384 -27668858 - Tigger1 DNA MER2_type -1 2417 464 247 226 65 74 chr6 154746396 154746613 -27668629 - L1MEc LINE L1 -4121 2704 2490 742 229 99 5 chr6 154746680 154746872 -27668370 - MER6B DNA MER2_type 0 210 1 487 273 67 22 chr6 154747033 154747300 -27667942 - L1MEc LINE L1 -4682 2143 1865 637 210 0 22 chr6 154747309 154747447 -27667795 - AluJb SINE Alu 0 312 178 393 106 2 30 chr6 154747482 154747554 -27667688 + MSTA LTR MaLR 150 221 -211 839 199 42 11 chr6 154747670 154747861 -27667381 - L1MB7 LINE L1 -16 6168 5972 1747 169 111 3 chr6 154747861 154748193 -27667049 + MSTA LTR MaLR 1 368 -60 207 0 0 0 chr6 154748470 154748493 -27666749 + (TA)n Simple_repeat Simple_repeat 2 24 0 27 62 0 0 chr6 154748539 154748587 -27666655 + AT_rich Low_complexity Low_complexity 1 48 0 30 0 0 0 chr6 154748632 154748662 -27666580 + AT_rich Low_complexity Low_complexity 1 30 0 423 127 0 28 chr6 154748678 154748749 -27666493 + MSTA LTR MaLR 360 428 0 2660 203 22 20 chr6 154748764 154748860 -27666382 - L1MB7 LINE L1 -242 5942 5848 1705 177 68 3 chr6 154748860 154749211 -27666031 - L1MC1 LINE L1 -7 6326 5953 2660 203 22 20 chr6 154749211 154749750 -27665492 - L1MB7 LINE L1 -336 5848 5306 875 196 47 29 chr6 154749744 154750020 -27665222 - L1MEc LINE L1 -5059 1483 1203 * 1882 139 137 34 chr6 154750096 154750484 -27664758 + MSTA LTR MaLR 1 428 0 200 200 0 0 chr6 154751139 154751174 -27664068 + (TG)n Simple_repeat Simple_repeat 1 35 0 2348 99 0 0 chr6 154751530 154751832 -27663410 - AluSg SINE Alu -8 302 1 5397 137 6 2 chr6 154751854 154753132 -27662110 - L1PA13 LINE L1 -7 6156 4897 1816 181 20 9 chr6 154753134 154753483 -27661759 - THE1A LTR MaLR 0 355 3 11606 87 8 13 chr6 154753490 154754644 -27660598 - THE1A-int LTR MaLR -6 1574 427 2159 134 7 0 chr6 154754644 154754950 -27660292 + AluSx SINE Alu 3 310 -2 11606 87 8 13 chr6 154754950 154755375 -27659867 - THE1A-int LTR MaLR -1153 427 2 6022 192 34 23 chr6 154755359 154755376 -27659866 - L1PA13 LINE L1 -1224 4922 4907 * 1730 181 57 28 chr6 154755376 154755730 -27659512 - THE1B LTR MaLR 0 364 1 6022 192 34 23 chr6 154755730 154755926 -27659316 - L1PA13 LINE L1 -1239 4907 4715 2177 92 0 36 chr6 154755926 154756231 -27659011 - AluY SINE Alu -17 294 1 6022 192 34 23 chr6 154756231 154756743 -27658499 - L1PA13 LINE L1 -1431 4715 4210 2069 134 24 46 chr6 154756743 154757115 -27658127 + THE1B LTR MaLR 1 364 0 6022 192 34 23 chr6 154757115 154757694 -27657548 - L1PA13 LINE L1 -1936 4210 3601 2557 198 11 48 chr6 154757693 154758300 -27656942 - L1MEc LINE L1 -5353 1189 605 * 1231 272 75 37 chr6 154758315 154758797 -27656445 - L1MEc LINE L1 -6038 504 5 835 306 83 34 chr6 154758840 154759369 -27655873 + MLT1H1 LTR MaLR 1 555 0 343 252 129 7 chr6 154760097 154760244 -27654998 + L2 LINE L2 3149 3313 0 241 310 155 17 chr6 154761543 154761659 -27653583 + MIR SINE MIR 122 253 -9 22 0 0 0 chr6 154761872 154761894 -27653348 + AT_rich Low_complexity Low_complexity 1 22 0 502 280 44 11 chr6 154762966 154763132 -27652110 + L1MC/D LINE L1 5361 5520 -752 2504 69 7 0 chr6 154763132 154763437 -27651805 + AluY SINE Alu 1 307 -4 502 280 44 11 chr6 154763437 154763582 -27651660 + L1MC/D LINE L1 5520 5706 -566 1062 314 63 5 chr6 154763583 154763997 -27651245 - L1MEc LINE L1 -5894 502 65 3339 201 49 60 chr6 154764005 154764998 -27650244 + Charlie1 DNA MER1_type 1780 2761 0 1826 43 0 146 chr6 154765463 154765765 -27649477 + AluY SINE Alu 40 297 -14 22 56 0 0 chr6 154766295 154766331 -27648911 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 154766442 154766463 -27648779 + AT_rich Low_complexity Low_complexity 1 21 0 351 301 0 11 chr6 154767698 154767791 -27647451 + L1MEd LINE L1 443 534 -5585 508 308 22 4 chr6 154767792 154768019 -27647223 + L1MEd LINE L1 2624 2854 -3275 264 273 0 0 chr6 154768034 154768133 -27647109 + (TA)n Simple_repeat Simple_repeat 2 100 0 22 80 0 0 chr6 154768272 154768322 -27646920 + AT_rich Low_complexity Low_complexity 1 50 0 2280 95 3 0 chr6 154768422 154768716 -27646526 - AluSx SINE Alu -16 296 2 218 200 22 0 chr6 154769370 154769415 -27645827 + L2 LINE L2 3267 3312 -1 271 254 0 0 chr6 154769482 154769545 -27645697 + GA-rich Low_complexity Low_complexity 2 64 0 510 310 75 6 chr6 154770081 154770255 -27644987 - MIR SINE MIR -18 244 59 1907 141 47 0 chr6 154770273 154770572 -27644670 + AluSq SINE Alu 1 313 0 234 222 86 77 chr6 154770726 154770843 -27644399 - MIR3 SINE MIR -86 122 5 967 163 114 5 chr6 154772110 154772312 -27642930 - MER31B LTR ERV1 0 466 243 443 216 23 0 chr6 154772306 154772394 -27642848 - MER31B LTR ERV1 -376 90 1 * 24 53 0 0 chr6 154772618 154772656 -27642586 + AT_rich Low_complexity Low_complexity 1 38 0 210 136 0 0 chr6 154772760 154772804 -27642438 + (CTATA)n Simple_repeat Simple_repeat 3 46 0 385 314 83 6 chr6 154772928 154773084 -27642158 - MIR3 SINE MIR -3 205 38 203 304 51 13 chr6 154773391 154773470 -27641772 + MIR SINE MIR 68 149 -113 204 97 0 0 chr6 154773649 154773680 -27641562 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 585 234 8 0 chr6 154775014 154775138 -27640104 + MIR SINE MIR 6 130 -132 27 49 0 0 chr6 154776060 154776101 -27639141 + AT_rich Low_complexity Low_complexity 1 41 0 252 211 0 0 chr6 154776223 154776299 -27638943 + T-rich Low_complexity Low_complexity 1 76 0 948 170 13 0 chr6 154776301 154776460 -27638782 - U1 snRNA snRNA -4 161 1 419 333 122 30 chr6 154776534 154776903 -27638339 - L1MC4a LINE L1 -1845 5963 5561 1204 152 41 37 chr6 154776914 154777157 -27638085 + THE1C LTR MaLR 1 244 -131 * 1730 144 72 10 chr6 154777154 154777460 -27637782 + THE1C LTR MaLR 51 375 0 244 316 26 26 chr6 154777492 154777647 -27637595 - L1MC4a LINE L1 -643 5521 5367 323 245 82 27 chr6 154777694 154777841 -27637401 - L1MC4a LINE L1 -870 5276 5122 6930 44 7 0 chr6 154777898 154778780 -27636462 - L1P LINE L1 -4359 1787 900 7633 25 0 0 chr6 154778803 154780240 -27635002 + L1PA3 LINE L1 4746 6178 0 252 300 19 25 chr6 154780249 154780409 -27634833 - L1MC4a LINE L1 -1101 5045 4887 652 294 27 8 chr6 154780614 154780982 -27634260 - L1MC4a LINE L1 -1450 4696 4322 6563 137 8 14 chr6 154781633 154782055 -27633187 + L1MA3 LINE L1 4932 5355 -950 2064 145 21 32 chr6 154782055 154782434 -27632808 - THE1C LTR MaLR 0 375 1 6563 137 8 14 chr6 154782434 154783391 -27631851 + L1MA3 LINE L1 5355 6305 0 393 300 49 33 chr6 154783422 154783729 -27631513 - L1ME3A LINE L1 -236 5917 5606 339 302 16 8 chr6 154783757 154783883 -27631359 - L1ME3A LINE L1 -2111 4018 3892 265 304 13 0 chr6 154783909 154783988 -27631254 - MLT1H LTR MaLR -16 533 454 303 315 44 28 chr6 154784201 154784382 -27630860 - L1ME3A LINE L1 -2596 3533 3350 12685 182 37 34 chr6 154784389 154787246 -27627996 + L1M1 LINE L1 15 2864 -4701 2141 117 0 0 chr6 154787246 154787529 -27627713 + AluSx SINE Alu 7 289 -23 12685 182 37 34 chr6 154787529 154787543 -27627699 + L1M1 LINE L1 2864 2876 -4689 6975 55 10 0 chr6 154787543 154788684 -27626558 + L1PA7 LINE L1 5002 6154 0 12685 182 37 34 chr6 154788684 154791662 -27623580 + L1M1 LINE L1 2876 6233 -1332 298 269 24 24 chr6 154791692 154791859 -27623383 - L1ME3A LINE L1 -3115 3014 2848 3959 177 60 15 chr6 154792271 154792331 -27622911 - L1MB4 LINE L1 0 6180 6124 347 97 0 16 chr6 154792331 154792393 -27622849 + (TA)n Simple_repeat Simple_repeat 2 62 0 3959 177 60 15 chr6 154792393 154793191 -27622051 - L1MB4 LINE L1 -56 6124 5283 1233 148 150 39 chr6 154793199 154793534 -27621708 - MSTA LTR MaLR -15 413 1 631 228 12 18 chr6 154793534 154793701 -27621541 - L1MB4 LINE L1 -858 5288 5123 406 296 107 7 chr6 154793768 154794059 -27621183 - L1ME3A LINE L1 -5198 921 602 241 295 13 70 chr6 154794291 154794447 -27620795 - L1ME3A LINE L1 -5971 148 2 1216 182 13 13 chr6 154794609 154794834 -27620408 + MLT1F LTR MaLR 318 542 0 22 0 0 0 chr6 154796185 154796207 -27619035 + AT_rich Low_complexity Low_complexity 1 22 0 399 233 55 48 chr6 154797306 154797452 -27617790 + MER69A DNA AcHobo 31 177 0 188 316 124 36 chr6 154797571 154797796 -27617446 + MIR SINE MIR 12 256 -6 404 282 148 20 chr6 154797796 154797945 -27617297 - L3 LINE CR1 -4 1573 1406 212 0 36 0 chr6 154798051 154798079 -27617163 + (TA)n Simple_repeat Simple_repeat 2 30 0 193 300 100 0 chr6 154798262 154798372 -27616870 - L2 LINE L2 -1235 2079 1959 2240 129 34 28 chr6 154798755 154799112 -27616130 - THE1B LTR MaLR 0 364 6 1380 230 52 41 chr6 154799385 154799877 -27615365 - L1MA9 LINE L1 -38 6274 5775 5982 94 31 0 chr6 154799896 154801548 -27613694 - L1PA12 LINE L1 -1 6167 4482 258 56 0 0 chr6 154801548 154801584 -27613658 + (TG)n Simple_repeat Simple_repeat 1 36 0 252 0 0 0 chr6 154801583 154801611 -27613631 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 21 36 0 0 chr6 154801792 154801820 -27613422 + AT_rich Low_complexity Low_complexity 1 28 0 339 257 14 79 chr6 154804337 154804477 -27610765 - LTR28 LTR ERV1 -53 967 837 759 226 21 63 chr6 154804521 154804805 -27610437 - LTR1 LTR ERV1 -561 224 1 2075 182 84 108 chr6 154805301 154806077 -27609165 - LTR1B LTR ERV1 -69 757 1 15572 208 23 27 chr6 154806248 154808652 -27606590 - L1PA12 LINE L1 -1662 5922 3509 2094 124 3 0 chr6 154808652 154808935 -27606307 - AluSg SINE Alu -26 284 1 15572 208 23 27 chr6 154808935 154809789 -27605453 - L1PA12 LINE L1 -4075 3509 2653 1984 23 0 0 chr6 154809789 154810008 -27605234 - AluYb8 SINE Alu -10 308 90 15572 208 23 27 chr6 154810008 154811888 -27603354 - L1PA12 LINE L1 -4931 2653 1 366 213 0 0 chr6 154811888 154811963 -27603279 - L1MA9 LINE L1 -509 5782 5708 389 354 63 68 chr6 154811967 154812411 -27602831 + L2 LINE L2 2520 2961 -353 346 230 71 53 chr6 154812569 154812682 -27602560 + L2 LINE L2 3183 3297 -16 224 224 93 56 chr6 154814103 154814153 -27601089 - MIR SINE MIR 0 262 215 207 0 0 0 chr6 154814153 154814176 -27601066 + (GGAGA)n Simple_repeat Simple_repeat 1 23 0 224 224 93 56 chr6 154814176 154814232 -27601010 - MIR SINE MIR -47 215 152 402 315 14 21 chr6 154814952 154815095 -27600147 - MIR SINE MIR -106 156 15 21 0 0 0 chr6 154816163 154816184 -27599058 + AT_rich Low_complexity Low_complexity 1 21 0 10850 22 0 0 chr6 154816283 154818318 -27596924 + L1PA2 LINE L1 4120 6154 -1 885 207 132 51 chr6 154818318 154818441 -27596801 - L1MC4 LINE L1 -2 8040 7928 210 37 0 0 chr6 154818441 154818468 -27596774 + (CA)n Simple_repeat Simple_repeat 2 28 0 885 207 132 51 chr6 154818468 154818678 -27596564 - L1MC4 LINE L1 -114 7928 7680 306 284 82 47 chr6 154819300 154819701 -27595541 + L1ME4a LINE L1 5506 5920 -201 259 204 20 0 chr6 154820078 154820127 -27595115 - AluJ/monomer SINE Alu -249 50 1 3075 233 51 25 chr6 154820270 154821017 -27594225 + L1P5 LINE L1 1 766 -6083 12794 228 22 23 chr6 154821413 154825493 -27589749 + L1P5 LINE L1 1474 5538 -1321 2400 92 3 0 chr6 154825493 154825799 -27589443 + AluSg1 SINE Alu 1 307 -2 12794 228 22 23 chr6 154825799 154826636 -27588606 + L1P5 LINE L1 5538 6375 -484 483 305 127 26 chr6 154826909 154827217 -27588025 - MLT1I LTR MaLR 0 409 71 1226 303 68 89 chr6 154827263 154827680 -27587562 + ERVL LTR ERVL 821 1245 -4519 812 215 77 34 chr6 154827680 154827889 -27587353 + MER20 DNA MER1_type 1 218 -1 1226 303 68 89 chr6 154827889 154828438 -27586804 + ERVL LTR ERVL 1245 1757 -4007 1763 206 14 16 chr6 154828438 154828802 -27586440 - MLT1A1 LTR MaLR -2 363 1 1226 303 68 89 chr6 154828802 154829118 -27586124 + ERVL LTR ERVL 1757 2078 -3686 636 254 80 19 chr6 154829126 154829337 -27585905 + ERVL LTR ERVL 2238 2503 -2633 3431 141 31 7 chr6 154829831 154830418 -27584824 + L1MB1 LINE L1 5568 6168 0 255 31 0 0 chr6 154831656 154831688 -27583554 + (A)n Simple_repeat Simple_repeat 1 32 0 268 268 235 7 chr6 154832871 154833024 -27582218 - MIR SINE MIR -70 192 5 181 318 148 46 chr6 154833765 154833982 -27581260 - L2 LINE L2 -134 3179 2941 2440 286 68 39 chr6 154833989 154834923 -27580319 - L2 LINE L2 -1579 1735 774 2396 72 0 0 chr6 154835019 154835312 -27579930 - AluY SINE Alu -18 293 1 410 370 64 24 chr6 154835377 154835707 -27579535 + L2 LINE L2 2303 2645 -669 323 347 38 94 chr6 154835887 154836282 -27578960 + L2 LINE L2 2898 3270 -2 2524 168 18 9 chr6 154836381 154836827 -27578415 + Tigger1 DNA MER2_type 25 474 -1944 11707 209 26 13 chr6 154836838 154838276 -27576966 - L1PA16 LINE L1 -9 6860 5442 387 0 0 0 chr6 154838276 154838319 -27576923 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 11707 209 26 13 chr6 154838319 154840804 -27574438 - L1PA16 LINE L1 -1427 5442 2892 11480 149 22 9 chr6 154840804 154842767 -27572475 + Tigger1 DNA MER2_type 430 2418 0 496 300 27 31 chr6 154843530 154843728 -27571514 + MIR SINE MIR 16 210 -52 367 231 25 50 chr6 154843970 154844091 -27571151 + L2 LINE L2 1659 1776 -1538 788 202 0 12 chr6 154844114 154844364 -27570878 + LTR22 LTR ERVK 1 345 -164 3809 113 18 2 chr6 154844364 154844912 -27570330 + HERVKC4 LTR ERVK 4523 5079 -1758 1978 157 2 5 chr6 154844882 154845296 -27569946 + HERVKC4 LTR ERVK 3172 6837 0 * 2456 190 22 14 chr6 154845296 154845797 -27569445 + LTR22 LTR ERVK 1 505 -4 1338 325 87 31 chr6 154845863 154847045 -27568197 + L2 LINE L2 2044 3312 -1 24 32 0 0 chr6 154847082 154847113 -27568129 + AT_rich Low_complexity Low_complexity 1 31 0 532 211 130 37 chr6 154848410 154848571 -27566671 - MER5B DNA MER1_type 0 178 3 306 0 0 0 chr6 154849308 154849342 -27565900 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 2122 131 0 3 chr6 154849344 154849657 -27565585 - AluSx SINE Alu 0 312 1 3326 155 9 5 chr6 154849821 154850377 -27564865 - MER89 LTR ERV1 0 559 2 5153 65 0 3 chr6 154850645 154851311 -27563931 - L1PA8 LINE L1 0 6172 5509 235 298 160 8 chr6 154851853 154851984 -27563258 - MIR SINE MIR -48 214 64 2431 201 42 15 chr6 154852774 154853317 -27561925 + MER74A LTR ERVL 1 558 0 297 0 0 0 chr6 154854238 154854271 -27560971 + (TG)n Simple_repeat Simple_repeat 2 34 0 370 241 14 0 chr6 154854277 154854422 -27560820 + (TA)n Simple_repeat Simple_repeat 1 147 0 221 309 12 37 chr6 154854661 154854742 -27560500 + L2 LINE L2 3193 3271 -1 2085 118 0 23 chr6 154855799 154856126 -27559116 - AluSp SINE Alu 0 313 1 486 316 8 8 chr6 154856495 154856628 -27558614 - MIR SINE MIR -57 151 19 401 262 143 37 chr6 154858260 154858559 -27556683 - MLT1I LTR MaLR -49 360 63 333 329 144 33 chr6 154858658 154859054 -27556188 + L2 LINE L2 2686 3164 -149 2957 174 11 44 chr6 154859054 154859627 -27555615 - MLT2B3 LTR ERVL 0 554 1 333 329 144 33 chr6 154859627 154859795 -27555447 + L2 LINE L2 3164 3312 -1 307 297 203 0 chr6 154859931 154860059 -27555183 + MIR SINE MIR 20 173 -89 282 306 74 0 chr6 154863125 154863233 -27552009 + MER39 LTR ERV1 5 120 -587 * 423 228 40 63 chr6 154863203 154863375 -27551867 + LTR48 LTR ERV1 128 293 -351 * 546 223 103 80 chr6 154863369 154863593 -27551649 + LTR48B LTR ERV1 402 630 -14 1549 213 54 40 chr6 154863637 154864065 -27551177 + Tigger2a DNA MER2_type 1 434 0 428 316 41 50 chr6 154864538 154864756 -27550486 + L1MEd LINE L1 411 626 -5493 418 281 99 31 chr6 154865136 154865673 -27549569 + L1MEd LINE L1 1059 1669 -4641 1840 144 61 25 chr6 154866031 154866393 -27548849 + THE1C LTR MaLR 1 375 0 504 289 23 12 chr6 154866541 154866714 -27548528 - MER117 DNA MER1_type -20 177 3 307 75 54 32 chr6 154866854 154866947 -27548295 + (TA)n Simple_repeat Simple_repeat 1 95 0 348 343 146 0 chr6 154867139 154867276 -27547966 - L2 LINE L2 -12 3260 3104 227 162 0 0 chr6 154867402 154867439 -27547803 - MLT2D LTR ERVL 0 414 378 709 79 18 0 chr6 154867440 154867554 -27547688 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 847 203 159 52 chr6 154867571 154867861 -27547381 - MSTD LTR MaLR 0 396 54 979 198 72 5 chr6 154867875 154868152 -27547090 - MLT2D LTR ERVL -72 342 1 287 263 71 0 chr6 154868154 154868253 -27546989 + MIR SINE MIR 119 224 -38 263 253 25 13 chr6 154868476 154868555 -27546687 + MER116 DNA Mariner 1 80 0 957 119 14 0 chr6 154870325 154870468 -27544774 + L1PB4 LINE L1 6010 6154 -2 2975 114 26 79 chr6 154870659 154871264 -27543978 - L1MA8 LINE L1 0 6291 5719 284 167 0 0 chr6 154871264 154871306 -27543936 - THE1B LTR MaLR -205 159 118 776 136 0 8 chr6 154871308 154871426 -27543816 + THE1B LTR MaLR 248 364 0 1713 166 92 0 chr6 154871428 154871801 -27543441 - L1MA8 LINE L1 -450 5721 5298 180 0 0 0 chr6 154872733 154872753 -27542489 + (T)n Simple_repeat Simple_repeat 1 20 0 453 213 142 6 chr6 154873449 154873632 -27541610 - MER58B DNA MER1_type 0 341 4 30 45 0 0 chr6 154873919 154873963 -27541279 + AT_rich Low_complexity Low_complexity 1 44 0 276 262 37 47 chr6 154874043 154874150 -27541092 - MER46C DNA MER2_type -27 311 206 * 1581 154 82 25 chr6 154874147 154874465 -27540777 + Tigger3(Golem) DNA MER2_type 2694 3029 0 1578 67 19 0 chr6 154874908 154875117 -27540125 + L1PA8 LINE L1 5940 6152 -20 745 131 15 7 chr6 154875208 154875345 -27539897 - L1MA8 LINE L1 -61 6230 6093 21 0 0 0 chr6 154875520 154875541 -27539701 + AT_rich Low_complexity Low_complexity 1 21 0 861 219 125 34 chr6 154876014 154876365 -27538877 - LTR52 LTR ERVL -38 383 1 456 263 163 14 chr6 154876369 154876611 -27538631 - L2 LINE L2 -284 3029 2743 335 265 0 20 chr6 154876948 154876956 -27538286 + (TA)n Simple_repeat Simple_repeat 1 8 -92 1746 180 42 12 chr6 154876956 154877290 -27537952 + MER2 DNA MER2_type 1 344 0 335 265 0 20 chr6 154877290 154877383 -27537859 + (TA)n Simple_repeat Simple_repeat 8 100 0 570 244 88 83 chr6 154877383 154877780 -27537462 - MER93a LTR ERV1 -2 400 2 180 0 0 0 chr6 154879078 154879098 -27536144 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 438 341 55 16 chr6 154879186 154879368 -27535874 + MIR3 SINE MIR 7 195 -13 261 243 52 121 chr6 154880199 154880372 -27534870 - L3 LINE CR1 -103 1474 1314 356 251 93 17 chr6 154880404 154880687 -27534555 - MLT1J1 LTR MaLR -15 431 68 247 310 88 26 chr6 154881270 154881383 -27533859 - MIR SINE MIR -50 158 38 2138 103 7 10 chr6 154881383 154881683 -27533559 - AluSx SINE Alu -13 299 1 204 200 14 114 chr6 154882798 154882868 -27532374 - MIR SINE MIR -108 154 92 3422 67 5 9 chr6 154882869 154883315 -27531927 - MLT2A1 LTR ERVL 0 444 1 45110 68 4 1 chr6 154883315 154888953 -27526289 - HERVL-A1 LTR ERVL 0 5654 1 1562 121 0 0 chr6 154888990 154889196 -27526046 - AluSx SINE Alu -106 206 1 6407 187 35 19 chr6 154889579 154891722 -27523520 + L1M1 LINE L1 2858 5035 -2530 332 263 30 0 chr6 154891757 154891856 -27523386 - L1MA10 LINE L1 -13 6321 6220 1188 147 70 140 chr6 154891912 154891976 -27523266 - MLT2B3 LTR ERVL -289 265 198 2025 29 0 4 chr6 154891976 154892218 -27523024 + L1PA4 LINE L1 5907 6147 -8 1188 147 70 140 chr6 154892218 154892438 -27522804 - MLT2B3 LTR ERVL -356 198 1 1627 262 75 40 chr6 154892438 154893318 -27521924 - L1MEc LINE L1 -3686 2529 1660 5207 165 44 0 chr6 154893581 154895009 -27520233 - L1PA15 LINE L1 -7 6809 5320 267 171 40 26 chr6 154895001 154895077 -27520165 - L1 LINE L1 -2770 3376 3300 * 1591 270 6 2 chr6 154895071 154895552 -27519690 - L1PA15 LINE L1 -3067 3730 3248 * 8598 248 41 31 chr6 154895536 154897977 -27517265 - L1PA15 LINE L1 -4319 2478 1 1011 254 93 54 chr6 154897987 154898640 -27516602 - L1MEc LINE L1 -4722 1674 996 1477 234 26 6 chr6 154898690 154899036 -27516206 - L1MEc LINE L1 -5542 854 502 786 293 62 31 chr6 154899052 154899373 -27515869 - L1MEc LINE L1 -6013 383 53 180 315 15 77 chr6 154900003 154900133 -27515109 + L2 LINE L2 1886 2007 -1307 281 238 48 0 chr6 154901717 154901780 -27513462 - L2 LINE L2 -2 3311 3246 28 29 0 0 chr6 154902357 154902392 -27512850 + AT_rich Low_complexity Low_complexity 1 35 0 198 103 0 0 chr6 154902949 154902978 -27512264 + (A)n Simple_repeat Simple_repeat 1 29 0 3782 245 69 23 chr6 154903006 154905069 -27510173 + L1MCb LINE L1 48 2403 -4342 5461 66 44 1 chr6 154905074 154905804 -27509438 - L1PA3 LINE L1 -3 6152 5392 3972 255 39 36 chr6 154905795 154907679 -27507563 + L1MCb LINE L1 2379 4223 -2341 * 261 277 42 54 chr6 154907680 154907846 -27507396 - L1ME LINE L1 -422 5699 5536 191 306 0 0 chr6 154908715 154908764 -27506478 + MIR SINE MIR 78 126 -136 2011 149 72 29 chr6 154909160 154909509 -27505733 - THE1B LTR MaLR 0 364 1 11823 87 6 0 chr6 154909509 154911075 -27504167 - THE1B-int LTR MaLR 0 1580 5 2206 111 71 31 chr6 154911100 154911450 -27503792 - THE1B LTR MaLR 0 364 1 14089 146 18 29 chr6 154911570 154914014 -27501228 + Tigger1 DNA MER2_type 1 2418 0 337 295 81 101 chr6 154915571 154915869 -27499373 + L3 LINE CR1 847 1138 -439 929 306 42 31 chr6 154916054 154916342 -27498900 + L3 LINE CR1 1191 1485 -92 2435 71 0 0 chr6 154916342 154916638 -27498604 - AluSg1 SINE Alu -13 296 1 929 306 42 31 chr6 154916638 154916709 -27498533 + L3 LINE CR1 1485 1554 -23 1170 145 45 116 chr6 154918239 154918550 -27496692 - MER44D DNA MER2_type -50 559 1 1157 258 42 12 chr6 154919361 154919691 -27495551 - MER93a LTR ERV1 0 402 63 54 49 0 0 chr6 154920094 154920176 -27495066 + AT_rich Low_complexity Low_complexity 1 82 0 1473 101 0 0 chr6 154920812 154921011 -27494231 + THE1C LTR MaLR 177 375 0 524 335 151 23 chr6 154921013 154921530 -27493712 - L2 LINE L2 -520 2794 2212 2031 131 0 59 chr6 154922343 154922701 -27492541 - MER1B DNA MER1_type 0 337 1 5501 162 33 11 chr6 154923040 154924344 -27490898 - L1MA9 LINE L1 0 6312 4980 21 0 0 0 chr6 154924363 154924384 -27490858 + AT_rich Low_complexity Low_complexity 1 21 0 413 223 41 8 chr6 154924507 154924628 -27490614 - L1ME LINE L1 -5861 209 85 2481 198 7 4 chr6 154924629 154925088 -27490154 + MLT1C LTR MaLR 1 460 -7 451 310 82 6 chr6 154925176 154925334 -27489908 + MIR SINE MIR 93 262 0 1788 245 72 41 chr6 154925350 154926239 -27489003 - L2 LINE L2 -34 3279 2356 397 243 47 9 chr6 154926797 154926904 -27488338 + MIR3 SINE MIR 98 208 0 24 32 0 0 chr6 154927771 154927802 -27487440 + AT_rich Low_complexity Low_complexity 1 31 0 459 304 104 18 chr6 154928133 154928353 -27486889 + MIR SINE MIR 10 248 -14 273 337 11 22 chr6 154928848 154928940 -27486302 + MIR SINE MIR 37 127 -81 1954 140 0 7 chr6 154932559 154932851 -27482391 + AluSx SINE Alu 1 290 -22 690 230 115 22 chr6 154932970 154933196 -27482046 - MIR SINE MIR -10 252 6 352 255 19 19 chr6 154933580 154933686 -27481556 - Charlie8 DNA MER1_type -2274 143 38 279 0 0 0 chr6 154934099 154934130 -27481112 + (CA)n Simple_repeat Simple_repeat 1 31 0 637 309 49 0 chr6 154936224 154936428 -27478814 + MIR SINE MIR 22 235 -27 21 71 0 0 chr6 154937095 154937137 -27478105 + AT_rich Low_complexity Low_complexity 1 42 0 286 301 113 42 chr6 154939293 154939506 -27475736 - L2 LINE L2 -1 3312 3085 3262 229 92 25 chr6 154939916 154941066 -27474176 + MER69B DNA AcHobo 1 1225 -1 338 317 30 0 chr6 154941066 154941165 -27474077 - LTR67 LTR ERVL -373 184 83 223 175 0 48 chr6 154941537 154941600 -27473642 + A-rich Low_complexity Low_complexity 3 62 0 834 201 29 114 chr6 154941679 154941987 -27473255 - LTR41 LTR ERVL -7 766 485 614 191 151 0 chr6 154942171 154942323 -27472919 - LTR41 LTR ERVL -598 175 1 555 317 53 48 chr6 154942666 154943060 -27472182 + L1M4 LINE L1 4134 4529 -1617 1521 252 132 55 chr6 154943170 154943658 -27471584 + HAL1 LINE L1 797 1246 -1261 6208 101 9 0 chr6 154943658 154945308 -27469934 + L1PA14 LINE L1 4535 6159 -2 1521 252 132 55 chr6 154945308 154945691 -27469551 + HAL1 LINE L1 1246 1598 -909 2930 6 0 0 chr6 154945691 154946007 -27469235 + AluYb8 SINE Alu 1 316 -2 1521 252 132 55 chr6 154946007 154946345 -27468897 + HAL1 LINE L1 1598 2101 -406 262 289 0 0 chr6 154946507 154946583 -27468659 + HAL1 LINE L1 2323 2398 -109 241 269 87 60 chr6 154946927 154947076 -27468166 + L1 LINE L1 4015 4167 -1979 601 323 54 95 chr6 154947525 154947989 -27467253 + L2 LINE L2 2827 3271 -1 22 56 0 0 chr6 154948038 154948074 -27467168 + AT_rich Low_complexity Low_complexity 1 36 0 372 268 95 6 chr6 154948654 154948833 -27466409 + L1M4 LINE L1 3751 3945 -2201 1980 107 57 7 chr6 154949153 154949434 -27465808 + AluSx SINE Alu 1 295 -17 1848 148 10 13 chr6 154949582 154949887 -27465355 + AluSx SINE Alu 6 309 -3 335 293 66 48 chr6 154949899 154950066 -27465176 + MIR SINE MIR 71 240 -22 186 262 131 9 chr6 154950261 154950368 -27464874 - L3 LINE CR1 -460 1117 998 266 360 16 24 chr6 154952259 154952384 -27462858 - MER5A DNA MER1_type 0 189 66 1934 169 31 21 chr6 154954096 154954480 -27460762 + MLT1B LTR MaLR 1 388 -2 696 314 112 42 chr6 154955358 154956116 -27459126 - L2 LINE L2 -8 3305 2448 337 221 21 42 chr6 154956894 154956989 -27458253 - MER5A DNA MER1_type -93 96 4 38 0 0 0 chr6 154957596 154957634 -27457608 + AT_rich Low_complexity Low_complexity 1 38 0 1316 205 29 14 chr6 154958259 154958537 -27456705 - AluJo SINE Alu -29 283 2 1962 128 24 10 chr6 154958541 154958831 -27456411 - AluJb SINE Alu -18 294 1 2066 103 0 69 chr6 154959090 154959410 -27455832 - AluSg SINE Alu -12 298 1 222 321 185 30 chr6 154959547 154960186 -27455056 + L2 LINE L2 2109 2846 -468 201 380 51 0 chr6 154960506 154960585 -27454657 + L2 LINE L2 3197 3279 -34 255 126 63 42 chr6 154960599 154960694 -27454548 + GA-rich Low_complexity Low_complexity 3 99 0 450 234 86 69 chr6 154961509 154961684 -27453558 + MER5B DNA MER1_type 1 178 0 323 299 60 15 chr6 154961954 154962088 -27453154 + MIR3 SINE MIR 50 189 -19 778 266 80 8 chr6 154962123 154962360 -27452882 + MIR SINE MIR 7 260 -2 1144 220 23 0 chr6 154962593 154962811 -27452431 + MER58A DNA MER1_type 2 224 0 2240 105 0 3 chr6 154963205 154963500 -27451742 + AluSx SINE Alu 3 296 -16 216 336 140 0 chr6 154963574 154963681 -27451561 - MIR SINE MIR -92 170 49 606 233 131 15 chr6 154965423 154965629 -27449613 - L1ME3A LINE L1 -6 6164 5935 1709 126 45 98 chr6 154966052 154966448 -27448794 + THE1C LTR MaLR 1 375 0 2076 159 55 33 chr6 154966474 154966871 -27448371 - MLT2D LTR ERVL -8 406 1 1526 89 49 0 chr6 154967129 154967332 -27447910 - AluSp SINE Alu -17 296 84 186 313 0 96 chr6 154967869 154967952 -27447290 + L2 LINE L2 3123 3197 -75 221 375 45 11 chr6 154968335 154968423 -27446819 - L2 LINE L2 -26 3246 3156 26 0 0 0 chr6 154968434 154968460 -27446782 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr6 154968482 154968531 -27446711 + AT_rich Low_complexity Low_complexity 1 49 0 1794 178 18 3 chr6 154969064 154969395 -27445847 + L1M2 LINE L1 1 336 -6513 227 233 0 0 chr6 154969474 154969517 -27445725 - L2 LINE L2 -64 3249 3207 2286 108 0 3 chr6 154970017 154970323 -27444919 - AluSg SINE Alu -5 305 1 23 0 0 0 chr6 154971712 154971735 -27443507 + AT_rich Low_complexity Low_complexity 1 23 0 2118 146 14 64 chr6 154972597 154973021 -27442221 + MER57A LTR ERV1 1 403 0 22 0 0 0 chr6 154973264 154973286 -27441956 + AT_rich Low_complexity Low_complexity 1 22 0 238 348 107 0 chr6 154973342 154973454 -27441788 + L2 LINE L2 3137 3260 -12 2083 116 7 0 chr6 154973454 154973738 -27441504 + AluSx SINE Alu 1 286 -26 27 0 0 0 chr6 154973742 154973769 -27441473 + AT_rich Low_complexity Low_complexity 1 27 0 2387 145 50 50 chr6 154975382 154975859 -27439383 - MER31A LTR ERV1 -8 477 1 1953 52 4 0 chr6 154976182 154976431 -27438811 + L1PA2 LINE L1 3 252 -5894 32669 26 1 0 chr6 154976432 154981109 -27434133 + L1PA2 LINE L1 1469 6152 -3 259 295 93 25 chr6 154981535 154981683 -27433559 + MIR3 SINE MIR 11 167 -41 277 266 0 0 chr6 154981897 154981961 -27433281 + (TG)n Simple_repeat Simple_repeat 2 65 0 929 268 172 13 chr6 154982804 154983188 -27432054 + L2 LINE L2 1334 1778 -1536 28 48 0 0 chr6 154983674 154983716 -27431526 + AT_rich Low_complexity Low_complexity 1 42 0 415 302 16 16 chr6 154984483 154984609 -27430633 - MIR3 SINE MIR -46 162 37 2141 275 96 35 chr6 154985244 154986223 -27429019 + HAL1 LINE L1 95 1133 -1374 36100 93 15 11 chr6 154986242 154992356 -27422886 + L1PA6 LINE L1 11 6154 0 660 219 106 90 chr6 154992378 154992757 -27422485 + HAL1 LINE L1 1149 1533 -974 722 269 27 78 chr6 154992799 154993212 -27422030 + HAL1 LINE L1 2116 2507 0 222 37 0 0 chr6 154993294 154993321 -27421921 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7571 31 0 0 chr6 154993328 154994686 -27420556 - L1PA3 LINE L1 -3 6152 4795 351 225 54 16 chr6 154994792 154994921 -27420321 - MER94 DNA DNA 0 134 1 2467 106 8 19 chr6 154994962 154995329 -27419913 - THE1B LTR MaLR 0 364 2 282 307 229 26 chr6 154995329 154995635 -27419607 + L2 LINE L2 2945 3312 -1 381 22 0 0 chr6 154996203 154996249 -27418993 + (TG)n Simple_repeat Simple_repeat 2 47 0 218 215 46 23 chr6 154996249 154996379 -27418863 + (TA)n Simple_repeat Simple_repeat 2 134 0 332 284 128 47 chr6 154996808 154997316 -27417926 + HAL1 LINE L1 799 1347 -1160 1078 262 77 29 chr6 154997380 154997822 -27417420 + L2 LINE L2 2051 2513 -801 354 362 18 12 chr6 154998100 154998263 -27416979 + HAL1b LINE L1 748 911 -437 311 370 43 14 chr6 154998324 154998535 -27416707 + HAL1 LINE L1 2204 2420 -87 396 245 42 0 chr6 154999728 154999852 -27415390 - MIR SINE MIR -68 140 35 1998 183 6 8 chr6 155000014 155000374 -27414868 + MLT1A1 LTR MaLR 1 359 -6 184 114 318 0 chr6 155000987 155001031 -27414211 - L2 LINE L2 -1 3312 3255 * 922 395 69 7 chr6 155001027 155001733 -27413509 - L2 LINE L2 -517 2797 2048 7635 225 126 21 chr6 155002257 155003163 -27412079 + L1MDa LINE L1 15 824 -5716 2887 13 0 0 chr6 155003163 155003478 -27411764 + AluYb8 SINE Alu 1 315 -3 7635 225 126 21 chr6 155003478 155005477 -27409765 + L1MDa LINE L1 824 3223 -3317 4370 192 8 0 chr6 155005476 155006329 -27408913 - L1P LINE L1 -1116 5030 4171 * 1746 153 41 0 chr6 155006329 155006619 -27408623 + L1PB4 LINE L1 5848 6154 -2 22 56 0 0 chr6 155006619 155006655 -27408587 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr6 155007040 155007079 -27408163 + AT_rich Low_complexity Low_complexity 1 39 0 3673 242 55 15 chr6 155007729 155009254 -27405988 + L1MDa LINE L1 1869 3426 -3114 1066 146 92 4 chr6 155009260 155009499 -27405743 + L1MA7 LINE L1 6029 6288 -3 488 16 16 0 chr6 155009707 155009768 -27405474 + (TG)n Simple_repeat Simple_repeat 2 63 0 7541 91 5 15 chr6 155010040 155011108 -27404134 - MER11C LTR ERVK -14 1057 1 1324 203 84 58 chr6 155011623 155012003 -27403239 + MLT1B LTR MaLR 1 390 0 289 250 78 8 chr6 155012245 155012373 -27402869 + MER117 DNA MER1_type 2 138 -59 293 282 123 75 chr6 155014146 155014398 -27400844 - MLT1J LTR MaLR -10 501 238 420 248 97 14 chr6 155014423 155014568 -27400674 - MLT1L LTR MaLR -327 288 132 516 288 35 74 chr6 155015269 155015526 -27399716 + MIR SINE MIR 1 247 -15 382 322 97 22 chr6 155015797 155016024 -27399218 - L3 LINE CR1 -654 923 680 2262 92 3 0 chr6 155016024 155016317 -27398925 - AluY SINE Alu -9 302 9 21 36 0 0 chr6 155016911 155016939 -27398303 + AT_rich Low_complexity Low_complexity 1 28 0 202 329 73 12 chr6 155017499 155017581 -27397661 - MIR SINE MIR -97 111 25 255 250 0 0 chr6 155017982 155018034 -27397208 - L2 LINE L2 -1 3271 3220 245 207 69 0 chr6 155018042 155018100 -27397142 - MLT1I LTR MaLR -18 391 330 963 96 0 0 chr6 155018101 155018226 -27397016 + AluJb SINE Alu 1 125 -187 216 200 0 0 chr6 155018245 155018315 -27396927 + (TA)n Simple_repeat Simple_repeat 2 71 0 1080 156 0 11 chr6 155018331 155018511 -27396731 + AluJb SINE Alu 127 304 -8 507 283 159 45 chr6 155018514 155018804 -27396438 - MLT1I LTR MaLR -71 338 16 26 0 0 0 chr6 155019720 155019746 -27395496 + AT_rich Low_complexity Low_complexity 1 26 0 1591 193 44 36 chr6 155019758 155020120 -27395122 + MLT1A1 LTR MaLR 1 365 0 212 387 24 57 chr6 155020241 155020356 -27394886 - L2 LINE L2 -453 2861 2744 2531 125 0 14 chr6 155020356 155020725 -27394517 + THE1B LTR MaLR 1 364 0 9909 112 63 3 chr6 155020725 155022215 -27393027 + THE1B-int LTR MaLR 1 1580 0 2744 96 0 0 chr6 155022216 155022579 -27392663 + THE1B LTR MaLR 2 364 0 212 387 24 57 chr6 155022579 155022672 -27392570 - L2 LINE L2 -568 2746 2657 7414 35 0 3 chr6 155022779 155024068 -27391174 + L1PA4 LINE L1 4869 6154 -1 283 285 41 23 chr6 155024101 155024216 -27391026 + MER5B DNA MER1_type 1 122 -67 461 366 21 0 chr6 155024291 155024482 -27390760 - L2 LINE L2 -880 2434 2240 7750 121 35 16 chr6 155024771 155026041 -27389201 + HSMAR2 DNA Mariner 5 1298 -4 3503 164 47 78 chr6 155026262 155027112 -27388130 + L1MB8 LINE L1 5275 6098 -80 811 183 0 0 chr6 155027113 155027243 -27387999 + MER2 DNA MER2_type 2 131 -214 4336 181 33 14 chr6 155027243 155027489 -27387753 - MER6 DNA MER2_type 0 865 625 2150 120 50 34 chr6 155027489 155027847 -27387395 - THE1B LTR MaLR 0 364 1 4336 181 33 14 chr6 155027847 155028449 -27386793 - MER6 DNA MER2_type -240 625 1 3178 127 35 19 chr6 155028459 155028978 -27386264 + MER1A DNA MER1_type 1 527 0 246 61 0 143 chr6 155028978 155029027 -27386215 + MER2 DNA MER2_type 132 173 -172 298 239 134 0 chr6 155029112 155029179 -27386063 + MER2 DNA MER2_type 270 345 0 495 107 13 0 chr6 155029181 155029256 -27385986 + L1MB7 LINE L1 6101 6176 -8 223 282 262 0 chr6 155029256 155029359 -27385883 - MER5B DNA MER1_type -48 130 1 15135 30 1 2 chr6 155029985 155032570 -27382672 + L1PA3 LINE L1 3573 6155 0 1767 170 7 7 chr6 155033815 155034115 -27381127 + AluJb SINE Alu 3 302 -10 1778 175 20 64 chr6 155035566 155035971 -27379271 + MLT1B LTR MaLR 1 387 -3 544 312 118 61 chr6 155036529 155037122 -27378120 + L1MEc LINE L1 93 719 -5677 317 144 18 117 chr6 155037181 155037292 -27377950 + L1MC3 LINE L1 4303 4402 -1744 3860 208 93 9 chr6 155037303 155038828 -27376414 + L1MC3 LINE L1 4491 5403 -743 5128 193 45 23 chr6 155038838 155039984 -27375258 + L1MC3 LINE L1 6614 7785 0 704 269 54 7 chr6 155040052 155040331 -27374911 + L1MEc LINE L1 820 1111 -5285 296 301 71 18 chr6 155040331 155040444 -27374798 + MIR SINE MIR 118 236 -26 551 224 54 20 chr6 155040477 155040624 -27374618 - L2 LINE L2 -4 3309 3158 279 290 17 111 chr6 155040651 155040769 -27374473 + MLT1L LTR MaLR 1 128 -465 2047 142 134 8 chr6 155040769 155041149 -27374093 + MSTA LTR MaLR 1 428 0 8996 184 24 1 chr6 155041149 155042758 -27372484 + MSTA-int LTR MaLR 1 1647 -4 279 290 17 111 chr6 155042758 155042769 -27372473 + MLT1L LTR MaLR 127 137 -456 2158 149 108 8 chr6 155042769 155043158 -27372084 + MSTA LTR MaLR 1 428 0 279 290 17 111 chr6 155043158 155043385 -27371857 + MLT1L LTR MaLR 137 400 -193 21 0 0 0 chr6 155043601 155043622 -27371620 + AT_rich Low_complexity Low_complexity 1 21 0 1683 104 0 9 chr6 155044373 155044690 -27370552 + L1PA8A LINE L1 5687 6119 -12 272 176 68 27 chr6 155044717 155044791 -27370451 + HAL1 LINE L1 1283 1359 -1148 407 299 126 4 chr6 155044863 155045094 -27370148 + HAL1 LINE L1 1525 1783 -724 324 0 0 0 chr6 155045136 155045172 -27370070 + (TG)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr6 155045346 155045368 -27369874 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 32 0 0 chr6 155045518 155045549 -27369693 + AT_rich Low_complexity Low_complexity 1 31 0 297 167 0 0 chr6 155045897 155045951 -27369291 - MIR SINE MIR -207 55 2 21 36 0 0 chr6 155046355 155046383 -27368859 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 155046553 155046574 -27368668 + AT_rich Low_complexity Low_complexity 1 21 0 403 312 93 36 chr6 155046912 155047300 -27367942 + L1MC4a LINE L1 5525 5934 -1874 325 280 88 115 chr6 155047929 155048511 -27366731 + L1M2 LINE L1 568 1133 -5716 320 316 80 80 chr6 155048370 155048706 -27366536 - L1M2 LINE L1 -5657 1192 857 * 340 271 31 0 chr6 155048910 155049006 -27366236 + MIR3 SINE MIR 89 187 -21 268 27 0 0 chr6 155049208 155049245 -27365997 - AluY SINE Alu -4 297 261 580 253 77 16 chr6 155050431 155050613 -27364629 - MIR SINE MIR -10 252 60 21 0 0 0 chr6 155050732 155050753 -27364489 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 155051937 155051959 -27363283 + AT_rich Low_complexity Low_complexity 1 22 0 11854 94 2 5 chr6 155052488 155054932 -27360310 - L1PA7 LINE L1 -10 6144 3703 9462 80 5 17 chr6 155054932 155056217 -27359025 + L1P3 LINE L1 384 1653 -4808 851 213 60 84 chr6 155056671 155057018 -27358224 - LTR37B LTR ERV1 -85 383 45 278 171 45 68 chr6 155057083 155057171 -27358071 - MIR SINE MIR -12 250 165 930 304 46 16 chr6 155059078 155059381 -27355861 - MLT1I LTR MaLR 0 409 98 425 185 23 8 chr6 155059660 155059790 -27355452 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 4259 185 37 29 chr6 155060631 155062383 -27352859 + L1MB7 LINE L1 4407 6168 -16 1048 238 83 28 chr6 155062973 155063335 -27351907 + L1MC4 LINE L1 7453 7834 -208 2151 168 39 32 chr6 155063335 155063883 -27351359 + MLT2A2 LTR ERVL 1 554 0 319 204 45 32 chr6 155063939 155064096 -27351146 + (TA)n Simple_repeat Simple_repeat 1 159 0 326 277 71 0 chr6 155064103 155064244 -27350998 + L1MC4 LINE L1 7892 8042 0 5209 182 16 0 chr6 155064341 155065282 -27349960 - Tigger1 DNA MER2_type -3 2415 1460 1196 233 49 3 chr6 155065273 155065599 -27349643 - HsTC2 DNA Tc2 -1412 486 146 * 976 207 6 0 chr6 155065621 155065800 -27349442 - MER58A DNA MER1_type -1 223 44 237 286 0 55 chr6 155065925 155066016 -27349226 + MLT1K LTR MaLR 335 420 -168 528 318 39 6 chr6 155066161 155066340 -27348902 + MIR SINE MIR 77 261 -1 817 288 93 8 chr6 155066911 155067322 -27347920 + LTR16C LTR ERVL 5 491 0 404 318 40 49 chr6 155067487 155067710 -27347532 + HERV16 LTR ERVL 384 604 -4392 517 348 37 38 chr6 155067803 155068188 -27347054 + HERV16 LTR ERVL 1576 1912 -3084 670 266 97 46 chr6 155068690 155068949 -27346293 + HERV16 LTR ERVL 2158 2429 -2567 * 963 343 47 23 chr6 155068924 155069515 -27345727 + HERV16 LTR ERVL 2600 3241 -1900 544 265 92 52 chr6 155069520 155069728 -27345514 + LTR16C LTR ERVL 180 401 -90 2419 85 0 22 chr6 155069728 155070044 -27345198 - AluSc SINE Alu 0 309 1 544 265 92 52 chr6 155070044 155070084 -27345158 + LTR16C LTR ERVL 401 438 -53 311 167 56 14 chr6 155070086 155070158 -27345084 - MER116 DNA Mariner -5 75 1 893 297 18 18 chr6 155070214 155070557 -27344685 - L1ME3A LINE L1 -218 5952 5610 288 319 50 28 chr6 155070766 155070907 -27344335 - L3b LINE CR1 -327 1256 1113 263 331 7 63 chr6 155070912 155071054 -27344188 + MER94 DNA DNA 1 134 0 196 269 21 152 chr6 155071808 155071953 -27343289 - MIR3 SINE MIR -45 163 38 3217 186 68 26 chr6 155072142 155072464 -27342778 - L1MA9 LINE L1 -25 6287 5980 6165 152 72 10 chr6 155072464 155073624 -27341618 + Tigger3b DNA MER2_type 1 1231 0 3217 186 68 26 chr6 155073624 155074097 -27341145 - L1MA9 LINE L1 -332 5980 5459 746 233 92 5 chr6 155074385 155074591 -27340651 + MER58A DNA MER1_type 1 224 0 875 211 73 0 chr6 155074599 155074803 -27340439 - MER20 DNA MER1_type 0 219 1 904 295 60 19 chr6 155074913 155075279 -27339963 + L2 LINE L2 1398 1778 -1536 1404 124 23 0 chr6 155075284 155075501 -27339741 + L1PA10 LINE L1 5936 6157 -11 260 269 95 67 chr6 155075526 155075622 -27339620 + L1MEc LINE L1 1325 1417 -4979 1953 145 0 0 chr6 155075622 155075904 -27339338 + AluSx SINE Alu 1 306 0 196 42 0 0 chr6 155075904 155075928 -27339314 + (GAAAA)n Simple_repeat Simple_repeat 2 150 0 260 269 95 67 chr6 155075928 155076083 -27339159 + L1MEc LINE L1 1417 1584 -4812 1313 189 23 11 chr6 155077347 155077611 -27337631 - L1MB7 LINE L1 -133 6120 5854 2579 108 3 3 chr6 155077611 155077964 -27337278 + THE1B LTR MaLR 1 353 -11 9888 113 34 40 chr6 155077971 155079560 -27335682 + THE1B-int LTR MaLR 1 1580 0 1908 90 12 0 chr6 155079560 155079816 -27335426 + THE1B LTR MaLR 1 259 -105 1597 122 0 0 chr6 155079821 155080043 -27335199 - L1P3 LINE L1 -6239 222 1 400 235 0 0 chr6 155080038 155080123 -27335119 - L1MB7 LINE L1 -1148 5067 4983 * 1742 283 51 32 chr6 155080134 155080951 -27334291 + L1M4 LINE L1 3369 4201 -1945 2201 233 22 4 chr6 155080975 155081434 -27333808 - ERVL LTR ERVL -2516 3248 2782 1562 151 57 27 chr6 155081436 155081735 -27333507 + MLT1C LTR MaLR 1 308 -159 1291 240 64 15 chr6 155081735 155082144 -27333098 - L1ME1 LINE L1 -154 6012 5584 2032 156 0 3 chr6 155082460 155082767 -27332475 + AluSx SINE Alu 1 306 -6 5494 10 0 0 chr6 155082773 155083527 -27331715 - L1HS LINE L1 -281 5874 5121 2530 20 0 0 chr6 155083527 155083819 -27331423 + L1HS LINE L1 5864 6155 0 4726 231 73 33 chr6 155084218 155085093 -27330149 - L1MB7 LINE L1 -2217 3998 3159 894 139 0 0 chr6 155085093 155085222 -27330020 + FLAM_C SINE Alu 1 129 -4 4726 231 73 33 chr6 155085222 155085360 -27329882 - L1MB7 LINE L1 -3056 3159 3028 2479 60 3 0 chr6 155085360 155085661 -27329581 - AluY SINE Alu -9 302 1 4726 231 73 33 chr6 155085661 155086536 -27328706 - L1MB7 LINE L1 -3187 3028 2073 1695 281 75 24 chr6 155086568 155087156 -27328086 - MLT1E3 LTR MaLR 0 624 7 603 240 67 80 chr6 155087160 155087547 -27327695 - L1MEc LINE L1 -4355 1906 1525 * 617 230 110 28 chr6 155087530 155087731 -27327511 - L1M4 LINE L1 -1644 4502 4268 17890 123 8 4 chr6 155087731 155091401 -27323841 - L1PA8 LINE L1 -7 6165 2482 617 230 110 28 chr6 155091401 155091490 -27323752 - L1M4 LINE L1 -1878 4268 4188 2083 135 7 0 chr6 155091534 155091830 -27323412 - AluSq SINE Alu -15 298 1 894 311 44 43 chr6 155091903 155092762 -27322480 - L1MEc LINE L1 -4453 1808 818 1118 220 4 36 chr6 155092766 155093016 -27322226 - MLT1E LTR MaLR -9 584 343 560 266 90 16 chr6 155093016 155093204 -27322038 - MLT1E LTR MaLR -373 220 19 683 284 38 74 chr6 155093326 155093850 -27321392 - L1MEc LINE L1 -5306 764 260 337 299 20 14 chr6 155093882 155094029 -27321213 - L1MEc LINE L1 -5907 163 16 892 329 31 43 chr6 155094104 155094594 -27320648 + L1M3b LINE L1 499 982 -5797 2167 281 41 13 chr6 155094924 155095828 -27319414 + L1M3b LINE L1 1611 2539 -4310 3554 217 25 18 chr6 155095848 155096645 -27318597 - MLT1A1-int LTR MaLR -932 803 1 1088 206 71 77 chr6 155096645 155096952 -27318290 - MLT1A1 LTR MaLR 0 365 59 3333 120 8 12 chr6 155096952 155097468 -27317774 + MER75 DNA T2_type 1 514 0 1088 206 71 77 chr6 155097468 155097525 -27317717 - MLT1A1 LTR MaLR -306 59 3 8020 167 49 9 chr6 155097536 155098916 -27316326 + ERVL-B3 LTR ERVL 3007 4483 -1281 2711 84 46 18 chr6 155098957 155098972 -27316270 - MLT2A1 LTR ERVL -41 403 390 342 0 0 0 chr6 155098972 155099010 -27316232 + (CA)n Simple_repeat Simple_repeat 2 39 0 2711 84 46 18 chr6 155099010 155099386 -27315856 - MLT2A1 LTR ERVL -54 390 1 7072 68 5 2 chr6 155099386 155100283 -27314959 - HERVL-A1 LTR ERVL 0 5654 4756 6917 168 62 0 chr6 155100276 155101477 -27313765 + ERVL-B3 LTR ERVL 4482 5757 -7 * 475 88 0 0 chr6 155101477 155101545 -27313697 + MLT2B3 LTR ERVL 1 68 -486 2115 201 41 59 chr6 155101646 155102094 -27313148 + MLT2B3 LTR ERVL 72 512 -42 201 39 0 0 chr6 155102094 155102120 -27313122 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 2115 201 41 59 chr6 155102120 155102163 -27313079 + MLT2B3 LTR ERVL 512 554 0 1041 253 91 49 chr6 155102299 155102785 -27312457 + MLT1H LTR MaLR 43 548 -1 378 385 44 71 chr6 155102815 155102841 -27312401 - L2 LINE L2 -10 3262 3237 2120 141 30 25 chr6 155102841 155103203 -27312039 - THE1B LTR MaLR 0 364 1 11794 89 6 3 chr6 155103203 155104778 -27310464 - THE1B-int LTR MaLR 0 1580 1 1946 142 54 23 chr6 155104778 155105131 -27310111 - THE1B LTR MaLR 0 364 1 378 385 44 71 chr6 155105131 155105538 -27309704 - L2 LINE L2 -32 3240 2839 269 173 115 0 chr6 155106256 155106308 -27308934 + L2 LINE L2 3213 3270 -2 222 333 87 0 chr6 155106324 155106393 -27308849 + MIR3 SINE MIR 118 192 -16 1352 141 101 4 chr6 155106901 155107177 -27308065 - L1MB5 LINE L1 0 6174 5872 1066 177 17 0 chr6 155110389 155110570 -27304672 - MER5A DNA MER1_type -5 184 1 191 35 0 35 chr6 155110611 155110640 -27304602 + (GGGAGA)n Simple_repeat Simple_repeat 3 30 0 24 0 0 0 chr6 155113823 155113847 -27301395 + AT_rich Low_complexity Low_complexity 1 24 0 1405 87 117 0 chr6 155114221 155114324 -27300918 - MER30 DNA MER1_type 0 230 140 309 51 0 0 chr6 155114324 155114363 -27300879 + (TG)n Simple_repeat Simple_repeat 2 40 0 1405 87 117 0 chr6 155114363 155114465 -27300777 - MER30 DNA MER1_type -90 140 1 287 330 89 82 chr6 155114927 155115218 -27300024 - L2 LINE L2 -1 3271 2979 259 235 348 9 chr6 155115256 155115371 -27299871 + MIR SINE MIR 91 244 -18 774 326 140 44 chr6 155115422 155116100 -27299142 - L2 LINE L2 -408 2906 2164 355 335 126 35 chr6 155120028 155120536 -27294706 - L2 LINE L2 0 3272 2724 1733 164 0 21 chr6 155120787 155121074 -27294168 + AluJo SINE Alu 8 288 -24 393 337 143 29 chr6 155121191 155121675 -27293567 + L2 LINE L2 1821 2359 -955 410 203 0 0 chr6 155122709 155122783 -27292459 - MIR SINE MIR -77 131 58 189 379 63 32 chr6 155123984 155124079 -27291163 + L2 LINE L2 3112 3209 -63 8509 38 6 2 chr6 155125980 155127068 -27288174 - L1P LINE L1 -2582 3564 2473 8483 21 0 0 chr6 155127067 155128828 -27286414 + L1PA2 LINE L1 4393 6153 -2 1116 241 130 43 chr6 155128836 155129105 -27286137 + L1ME1 LINE L1 821 1065 -5152 2434 56 0 17 chr6 155129105 155129407 -27285835 - AluY SINE Alu -14 297 1 1116 241 130 43 chr6 155129407 155129901 -27285341 + L1ME1 LINE L1 1065 1494 -4723 1694 229 70 44 chr6 155129904 155130559 -27284683 + L1ME1 LINE L1 1685 2356 -4040 2099 218 31 15 chr6 155130560 155131078 -27284164 + L1ME1 LINE L1 5355 5880 -355 998 246 36 42 chr6 155131205 155131538 -27283704 + L1ME1 LINE L1 5901 6231 -4 5255 192 57 7 chr6 155132868 155134029 -27281213 + L1MA9 LINE L1 4018 5236 -910 4645 135 6 80 chr6 155134038 155134978 -27280264 + L1MA9 LINE L1 5283 6153 -159 1815 31 53 22 chr6 155134985 155135212 -27280030 + AluY SINE Alu 1 234 -77 301 43 58 29 chr6 155135221 155135290 -27279952 + A-rich Low_complexity Low_complexity 4 74 0 392 254 26 0 chr6 155135290 155135404 -27279838 + L1MA10 LINE L1 6161 6277 -57 191 312 104 52 chr6 155135407 155135484 -27279758 + L2 LINE L2 3171 3251 -21 209 214 0 71 chr6 155135743 155135799 -27279443 + L2 LINE L2 3221 3272 0 260 286 16 0 chr6 155135860 155135923 -27279319 - L2 LINE L2 -18 3254 3191 203 102 17 85 chr6 155137303 155137362 -27277880 + (TAAAAA)n Simple_repeat Simple_repeat 4 58 0 22 0 0 0 chr6 155137407 155137429 -27277813 + AT_rich Low_complexity Low_complexity 1 22 0 381 22 0 0 chr6 155137738 155137784 -27277458 + (CA)n Simple_repeat Simple_repeat 2 47 0 1320 173 59 93 chr6 155137960 155138347 -27276895 + MLT1A2 LTR MaLR 1 374 0 892 181 159 52 chr6 155138783 155139147 -27276095 + LTR37A LTR ERV1 24 426 0 264 175 50 88 chr6 155139147 155139227 -27276015 + MIR SINE MIR 119 195 -67 944 227 67 103 chr6 155140108 155140405 -27274837 + MLT1D LTR MaLR 1 307 -198 297 0 0 0 chr6 155140405 155140438 -27274804 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 378 0 0 0 chr6 155140437 155140479 -27274763 + (GA)n Simple_repeat Simple_repeat 2 43 0 944 227 67 103 chr6 155140438 155140705 -27274537 + MLT1D LTR MaLR 307 505 0 2145 170 2 20 chr6 155140763 155141158 -27274084 - MLT1B LTR MaLR 0 390 3 321 263 97 53 chr6 155141169 155141283 -27273959 - MIR SINE MIR -112 150 32 3741 213 65 19 chr6 155141746 155143052 -27272190 - L1MC/D LINE L1 -718 5615 4252 1660 82 0 5 chr6 155143158 155143364 -27271878 - AluY SINE Alu -106 205 1 1792 190 11 8 chr6 155143367 155143730 -27271512 - L1MC/D LINE L1 -1906 4240 3877 8850 143 29 0 chr6 155143748 155146005 -27269237 + L1PA11 LINE L1 3881 6174 0 662 254 47 5 chr6 155146007 155146200 -27269042 - L2 LINE L2 -711 2603 2403 354 98 0 0 chr6 155146495 155146546 -27268696 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 2172 102 3 0 chr6 155146719 155147042 -27268200 + AluSq SINE Alu 1 324 0 908 84 14 7 chr6 155147282 155147424 -27267818 - L1MA9 LINE L1 -7 6305 6163 269 229 153 49 chr6 155147734 155147771 -27267471 - MER46A DNA MER2_type -52 184 133 903 124 233 10 chr6 155147771 155147964 -27267278 + MER46A DNA MER2_type 1 236 0 1042 153 72 24 chr6 155148001 155148210 -27267032 + MER20 DNA MER1_type 1 219 0 1319 149 27 0 chr6 155148807 155149028 -27266214 - L1MB7 LINE L1 -22 6162 5936 859 191 0 13 chr6 155149033 155149190 -27266052 + FRAM SINE Alu 5 159 -17 1848 162 31 87 chr6 155149190 155149484 -27265758 - L1MB7 LINE L1 -229 5949 5640 1700 218 29 5 chr6 155149484 155149865 -27265377 + MLT1B LTR MaLR 1 390 0 1848 162 31 87 chr6 155149865 155150154 -27265088 - L1MB7 LINE L1 -538 5640 5465 5422 86 15 4 chr6 155150154 155150909 -27264333 + MER4E LTR ERV1 4 766 0 1848 162 31 87 chr6 155150909 155150940 -27264302 - L1MB7 LINE L1 -713 5465 5434 1638 167 68 15 chr6 155150939 155151275 -27263967 - L1MC1 LINE L1 0 6333 5980 * 772 162 0 19 chr6 155151278 155151432 -27263810 - L1MB7 LINE L1 -746 5438 5288 2298 99 6 3 chr6 155152431 155152743 -27262499 + AluSq SINE Alu 1 313 0 1927 174 0 0 chr6 155153149 155153448 -27261794 + AluJb SINE Alu 1 299 -13 25 83 0 0 chr6 155153530 155153590 -27261652 + AT_rich Low_complexity Low_complexity 1 60 0 233 243 202 33 chr6 155153756 155154028 -27261214 - Charlie7 DNA MER1_type 0 2612 2295 1065 148 11 6 chr6 155154034 155154210 -27261032 - THE1B LTR MaLR 0 364 188 245 242 30 0 chr6 155154565 155154631 -27260611 + GA-rich Low_complexity Low_complexity 4 71 0 1598 166 55 0 chr6 155154637 155154908 -27260334 + AluJb SINE Alu 11 296 -16 213 343 146 13 chr6 155155816 155156055 -27259187 + L3b LINE CR1 1106 1376 -207 180 218 129 69 chr6 155157741 155157842 -27257400 - L3 LINE CR1 -871 706 600 * 377 312 32 32 chr6 155157826 155157983 -27257259 + MIR SINE MIR 56 212 -50 1765 108 4 12 chr6 155160269 155160520 -27254722 - AluSx SINE Alu -6 306 58 291 193 88 79 chr6 155160937 155161051 -27254191 - L2 LINE L2 -39 3274 3160 1393 289 53 73 chr6 155161146 155161981 -27253261 - L2 LINE L2 -340 2974 2157 1851 142 91 0 chr6 155162180 155162511 -27252731 + MER46B DNA MER2_type 1 236 0 256 274 113 0 chr6 155162530 155162636 -27252606 - L2 LINE L2 -1721 1593 1476 * 2913 236 143 90 chr6 155162633 155164347 -27250895 + L2 LINE L2 1490 3298 -15 296 344 194 16 chr6 155164352 155164599 -27250643 - L2 LINE L2 -1824 1490 1200 551 348 99 66 chr6 155164864 155165286 -27249956 + L2 LINE L2 2834 3269 -3 216 210 12 37 chr6 155165774 155165855 -27249387 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 477 341 102 22 chr6 155168438 155168664 -27246578 + MIR SINE MIR 4 247 -15 11571 177 45 10 chr6 155169388 155171204 -27244038 + L1MA8 LINE L1 2726 4476 -1815 1769 178 111 33 chr6 155171204 155171556 -27243686 + MSTB2 LTR MaLR 1 393 -64 1858 171 3 10 chr6 155171556 155171854 -27243388 - AluJo SINE Alu -16 296 1 1769 178 111 33 chr6 155171854 155171923 -27243319 + MSTB2 LTR MaLR 393 455 -2 11571 177 45 10 chr6 155171923 155173358 -27241884 + L1MA8 LINE L1 4476 6112 -179 1007 245 84 31 chr6 155173358 155173681 -27241561 + MER2 DNA MER2_type 4 343 -1 11571 177 45 10 chr6 155173681 155173867 -27241375 + L1MA8 LINE L1 6112 6290 -1 420 241 57 43 chr6 155175499 155175640 -27239602 - L2 LINE L2 0 3313 3171 29 60 0 0 chr6 155175875 155175925 -27239317 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr6 155176006 155176029 -27239213 + AT_rich Low_complexity Low_complexity 1 23 0 345 270 86 105 chr6 155177638 155178179 -27237063 + L1M2 LINE L1 535 1392 -5457 240 265 179 26 chr6 155178345 155178462 -27236780 - MIR3 SINE MIR -60 148 14 284 318 156 11 chr6 155179337 155179516 -27235726 + MIR3 SINE MIR 3 207 -1 2235 149 26 0 chr6 155179708 155180097 -27235145 + MER57A LTR ERV1 1 399 -4 3342 82 14 5 chr6 155180268 155180708 -27234534 - MLT2A1 LTR ERVL 0 444 1 904 191 36 162 chr6 155180708 155181128 -27234114 - MLT1A2 LTR MaLR -7 367 1 231 264 121 55 chr6 155181475 155181566 -27233676 + L2 LINE L2 3204 3300 -13 201 261 246 0 chr6 155183586 155183655 -27231587 + MIR SINE MIR 31 116 -146 1570 257 136 19 chr6 155183656 155184185 -27231057 + MLT1E LTR MaLR 3 593 0 561 178 30 59 chr6 155184196 155184331 -27230911 + MIR SINE MIR 124 254 -8 2057 121 14 3 chr6 155184755 155185052 -27230190 + AluSx SINE Alu 1 300 -12 274 253 138 23 chr6 155185115 155185202 -27230040 + L2 LINE L2 3170 3266 -6 1820 127 11 11 chr6 155187412 155187679 -27227563 - AluSx SINE Alu -45 267 1 225 0 0 0 chr6 155188232 155188257 -27226985 + (CAA)n Simple_repeat Simple_repeat 3 27 0 218 303 0 30 chr6 155188482 155188548 -27226694 - MER91 DNA MER1_type -76 64 1 24 0 0 0 chr6 155189163 155189187 -27226055 + AT_rich Low_complexity Low_complexity 1 24 0 225 200 0 0 chr6 155189188 155189238 -27226004 + L1MA6 LINE L1 4368 4417 -1729 1473 177 64 24 chr6 155189238 155189605 -27225637 + MSTA LTR MaLR 1 428 0 5385 154 21 44 chr6 155189605 155191017 -27224225 + L1MA6 LINE L1 4413 5856 -444 2340 109 3 0 chr6 155191017 155191329 -27223913 + AluSp SINE Alu 1 313 0 5385 154 21 44 chr6 155191329 155191454 -27223788 + L1MA6 LINE L1 5856 5982 -318 2856 87 3 11 chr6 155191454 155191832 -27223410 + THE1C LTR MaLR 1 375 0 5385 154 21 44 chr6 155191832 155192223 -27223019 + L1MA6 LINE L1 5982 6295 -5 843 222 93 31 chr6 155193388 155193775 -27221467 - L1MC5 LINE L1 -44 7917 7507 * 2758 228 58 49 chr6 155193768 155194597 -27220645 - L1ME1 LINE L1 -1 6165 5319 1590 201 29 0 chr6 155194597 155194871 -27220371 - AluJo SINE Alu -30 282 1 2758 228 58 49 chr6 155194871 155195052 -27220190 - L1ME1 LINE L1 -847 5319 5141 673 188 154 83 chr6 155195123 155195447 -27219795 - L1MC5 LINE L1 -410 7551 7205 217 387 7 15 chr6 155195566 155195703 -27219539 - MIR SINE MIR -50 212 77 276 306 77 60 chr6 155195779 155195962 -27219280 - L2 LINE L2 0 3313 3128 2002 121 0 3 chr6 155197034 155197357 -27217885 - AluSx SINE Alu 0 322 1 278 139 0 0 chr6 155197474 155197517 -27217725 - L2 LINE L2 -5 3267 3225 255 207 11 23 chr6 155197936 155198023 -27217219 + (TATAA)n Simple_repeat Simple_repeat 3 88 0 233 313 0 0 chr6 155199648 155199715 -27215527 + GA-rich Low_complexity Low_complexity 2 68 0 827 230 20 123 chr6 155201412 155201817 -27213425 - MLT1A1 LTR MaLR -2 363 1 188 388 107 0 chr6 155201821 155201942 -27213300 + L2 LINE L2 3138 3271 -1 2149 155 16 6 chr6 155202929 155203306 -27211936 + MLT2D LTR ERVL 8 486 -34 313 205 60 6 chr6 155203309 155203475 -27211767 + (TA)n Simple_repeat Simple_repeat 1 175 0 450 213 35 6 chr6 155203531 155203705 -27211537 + (TA)n Simple_repeat Simple_repeat 1 179 0 60 53 0 0 chr6 155203715 155203810 -27211432 + AT_rich Low_complexity Low_complexity 1 95 0 268 210 56 14 chr6 155203875 155204018 -27211224 + (TA)n Simple_repeat Simple_repeat 2 150 0 231 191 36 18 chr6 155204021 155204131 -27211111 + (CATATA)n Simple_repeat Simple_repeat 5 116 0 283 128 0 0 chr6 155204137 155204184 -27211058 + MLT2D LTR ERVL 469 515 0 802 209 51 73 chr6 155204376 155204773 -27210469 - MLT1A1 LTR MaLR -17 348 1 25 31 0 0 chr6 155204778 155204810 -27210432 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 155206961 155206982 -27208260 + AT_rich Low_complexity Low_complexity 1 21 0 247 266 106 80 chr6 155207179 155207235 -27208007 + MLT1K LTR MaLR 312 365 -223 2049 112 31 52 chr6 155207235 155207618 -27207624 - THE1C LTR MaLR 0 375 1 247 266 106 80 chr6 155207618 155207798 -27207444 + MLT1K LTR MaLR 365 554 -34 1211 176 0 59 chr6 155208894 155209132 -27206110 + AluJo SINE Alu 87 310 -2 2336 112 0 0 chr6 155209916 155210220 -27205022 + AluSx SINE Alu 1 304 -8 258 290 159 41 chr6 155210657 155210802 -27204440 - MIR3 SINE MIR -29 179 18 705 282 39 36 chr6 155211907 155212240 -27203002 - LTR16B LTR ERVL -2 462 129 1664 178 176 74 chr6 155212885 155213357 -27201885 - MLT2B1 LTR ERVL 0 520 1 203 217 117 0 chr6 155213429 155213489 -27201753 - L2 LINE L2 -263 3009 2943 252 83 18 28 chr6 155213556 155213665 -27201577 + HERV17 LTR ERV1 723 830 -7796 637 219 77 15 chr6 155213872 155214068 -27201174 - MER3 DNA MER1_type 0 209 2 704 297 24 0 chr6 155214332 155214544 -27200698 + MIR SINE MIR 19 235 -27 311 211 33 22 chr6 155214739 155214829 -27200413 - MLT1A2 LTR MaLR -274 92 1 180 0 0 0 chr6 155214893 155214913 -27200329 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2442 289 13 9 chr6 155214938 155215728 -27199514 + L1MEc LINE L1 36 828 -5568 * 6722 80 8 3 chr6 155215726 155216701 -27198541 - L1P LINE L1 -1771 4375 3396 14245 35 0 0 chr6 155268326 155270810 -27144432 - L1PA4 LINE L1 -11 6144 3668 29 28 0 0 chr6 155271017 155271053 -27144189 + AT_rich Low_complexity Low_complexity 1 36 0 2050 145 0 3 chr6 155271089 155271399 -27143843 - AluSx SINE Alu -3 309 1 2397 96 0 10 chr6 155272437 155272750 -27142492 + AluSg SINE Alu 1 310 0 226 324 132 7 chr6 155272926 155273062 -27142180 + MIR SINE MIR 27 179 -83 1193 199 14 0 chr6 155273157 155273373 -27141869 - MER20 DNA MER1_type 0 219 1 286 263 26 13 chr6 155273382 155273458 -27141784 + L2 LINE L2 3189 3265 -7 375 338 70 77 chr6 155274438 155274846 -27140396 + L2 LINE L2 2548 2949 -323 2141 114 0 0 chr6 155274846 155275136 -27140106 + AluY SINE Alu 1 290 -21 375 338 70 77 chr6 155275136 155275397 -27139845 + L2 LINE L2 2949 3210 -62 1383 129 8 123 chr6 155275703 155276068 -27139174 - MER33 DNA MER1_type -1 323 1 237 65 0 0 chr6 155276766 155276797 -27138445 + (CA)n Simple_repeat Simple_repeat 2 32 0 659 320 133 9 chr6 155276802 155277230 -27138012 - LTR33 LTR ERVL -6 515 35 2094 125 7 0 chr6 155277279 155277575 -27137667 - AluSx SINE Alu -14 298 1 475 239 239 0 chr6 155277816 155277950 -27137292 + MIR SINE MIR 70 235 -27 777 142 8 16 chr6 155278169 155278296 -27136946 + FLAM_C SINE Alu 1 126 -17 25 65 0 0 chr6 155278351 155278397 -27136845 + AT_rich Low_complexity Low_complexity 1 46 0 605 102 0 0 chr6 155278576 155278664 -27136578 + AluSg/x SINE Alu 208 295 -15 316 338 60 15 chr6 155278669 155278802 -27136440 - L2 LINE L2 -24 3248 3110 7205 33 1 0 chr6 155278865 155280386 -27134856 - L1PA4 LINE L1 0 6155 4634 2845 10 0 0 chr6 155281267 155281575 -27133667 + AluYa5 SINE Alu 1 308 -3 232 333 56 69 chr6 155281780 155282344 -27132898 - L2 LINE L2 -166 3106 2547 745 314 81 65 chr6 155282356 155283063 -27132179 - L2 LINE L2 -896 2418 1701 457 294 20 26 chr6 155283341 155283494 -27131748 + MIR3 SINE MIR 25 176 -32 1914 266 41 52 chr6 155283844 155284745 -27130497 + L2 LINE L2 2407 3297 -16 25 0 0 0 chr6 155286492 155286517 -27128725 + AT_rich Low_complexity Low_complexity 1 25 0 405 309 18 119 chr6 155286722 155287049 -27128193 - MLT1L LTR MaLR -221 394 101 5460 78 0 0 chr6 155288451 155289145 -27126097 - THE1B-int LTR MaLR -884 696 3 2315 95 48 28 chr6 155289147 155289504 -27125738 - THE1B LTR MaLR 0 364 1 2318 96 3 3 chr6 155290785 155291086 -27124156 + AluSq SINE Alu 1 301 -12 332 341 65 18 chr6 155291465 155291682 -27123560 - MIR SINE MIR -25 237 11 1920 228 50 43 chr6 155292306 155292961 -27122281 - L1MEc LINE L1 -4201 2195 1536 13245 28 2 1 chr6 155292974 155295319 -27119923 - L1PA4 LINE L1 -3 6152 3805 198 312 143 0 chr6 155295376 155295453 -27119789 - L2 LINE L2 -42 3271 3184 204 40 0 0 chr6 155295624 155295649 -27119593 + (TG)n Simple_repeat Simple_repeat 2 26 0 443 206 0 8 chr6 155295657 155295783 -27119459 + GA-rich Low_complexity Low_complexity 2 126 0 300 352 0 0 chr6 155296642 155296733 -27118509 + MER58B DNA MER1_type 1 91 -250 605 234 78 0 chr6 155296742 155296909 -27118333 - L1MB5 LINE L1 -14 6658 6479 2391 127 8 19 chr6 155296918 155297297 -27117945 - THE1C LTR MaLR 0 375 1 4758 123 4 11 chr6 155297297 155298004 -27117238 - THE1C-int LTR MaLR 0 1580 879 658 321 33 3 chr6 155298008 155298046 -27117196 - L1MD1 LINE L1 -212 6030 5625 2176 128 41 22 chr6 155298046 155298414 -27116828 - THE1C LTR MaLR 0 375 1 2974 196 27 55 chr6 155298414 155299551 -27115691 - L1MB5 LINE L1 -191 6481 5377 986 181 48 24 chr6 155299553 155299763 -27115479 - MSTB1 LTR MaLR 0 432 218 15612 157 21 10 chr6 155299804 155300859 -27114383 + L1MA2 LINE L1 2298 3341 -4382 1548 135 20 20 chr6 155300859 155301103 -27114139 - AluSx SINE Alu -16 296 53 15612 157 21 10 chr6 155301103 155305413 -27109829 + L1MA2 LINE L1 3341 7713 -10 1817 240 28 43 chr6 155305432 155306078 -27109164 - L1MB5 LINE L1 -1811 4833 4198 * 3812 228 53 46 chr6 155306071 155308432 -27106810 - L1MB5 LINE L1 -4212 2434 1 6257 89 13 2 chr6 155308466 155309117 -27106125 - L1PA14 LINE L1 -9 6152 5510 2226 100 0 10 chr6 155309117 155309426 -27105816 - AluY SINE Alu -5 306 1 6257 89 13 2 chr6 155309426 155310141 -27105101 - L1PA14 LINE L1 -651 5510 4770 1738 168 3 12 chr6 155310146 155310480 -27104762 + L1PA14 LINE L1 4429 4759 -1387 1095 209 36 0 chr6 155310489 155310714 -27104528 + MER58B DNA MER1_type 105 337 -4 1204 222 107 53 chr6 155311042 155311486 -27103756 + MLT1C LTR MaLR 5 467 0 183 80 0 0 chr6 155311715 155311740 -27103502 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 191 364 186 0 chr6 155311774 155311914 -27103328 + MIR3 SINE MIR 33 198 -10 23 33 0 0 chr6 155312314 155312344 -27102898 + AT_rich Low_complexity Low_complexity 1 30 0 392 226 17 78 chr6 155314385 155314500 -27100742 + MER94 DNA DNA 16 123 -11 1810 308 56 28 chr6 155314685 155315190 -27100052 - HAL1 LINE L1 -1693 814 278 2178 112 3 0 chr6 155315190 155315484 -27099758 - AluSg SINE Alu -14 296 2 1810 308 56 28 chr6 155315484 155315766 -27099476 - HAL1 LINE L1 -2229 278 5 231 314 8 8 chr6 155315804 155315922 -27099320 - L1 LINE L1 -1800 4346 4229 605 330 66 16 chr6 155315922 155316240 -27099002 + L2 LINE L2 1822 2155 -1159 26 0 0 0 chr6 155316886 155316912 -27098330 + AT_rich Low_complexity Low_complexity 1 26 0 316 239 87 11 chr6 155316953 155317045 -27098197 - MIR SINE MIR -72 190 92 264 100 0 0 chr6 155317242 155317282 -27097960 + (TG)n Simple_repeat Simple_repeat 1 40 0 262 351 149 36 chr6 155317680 155318406 -27096836 + L2 LINE L2 1809 2616 -698 22 0 0 0 chr6 155318412 155318434 -27096808 + AT_rich Low_complexity Low_complexity 1 22 0 1333 240 46 18 chr6 155318438 155318830 -27096412 - L1ME2 LINE L1 -11 6153 5751 192 336 41 49 chr6 155319355 155319477 -27095765 + MIR SINE MIR 63 142 -66 443 227 73 9 chr6 155319862 155319972 -27095270 - L2 LINE L2 0 3313 3197 970 193 13 4 chr6 155320066 155320294 -27094948 - L1MA4 LINE L1 -11 6289 6060 884 160 92 55 chr6 155321083 155321371 -27093871 + THE1C LTR MaLR 1 287 -141 9396 121 29 47 chr6 155321399 155323007 -27092235 + THE1C-int LTR MaLR 3 1580 0 1012 178 100 25 chr6 155323007 155323248 -27091994 + THE1C LTR MaLR 1 259 -116 420 20 0 0 chr6 155326436 155326485 -27088757 + (TG)n Simple_repeat Simple_repeat 1 49 0 204 268 0 0 chr6 155327527 155327583 -27087659 + GA-rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr6 155330080 155330106 -27085136 + AT_rich Low_complexity Low_complexity 1 26 0 204 311 76 25 chr6 155332375 155332494 -27082748 - L3 LINE CR1 -184 1393 1269 380 288 66 70 chr6 155332577 155332834 -27082408 - L3 LINE CR1 -620 957 702 192 103 77 26 chr6 155335268 155335307 -27079935 + MIR SINE MIR 119 159 -103 348 292 0 52 chr6 155335548 155335644 -27079598 - MIR SINE MIR -61 147 57 192 77 0 0 chr6 155335681 155335707 -27079535 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 312 324 109 29 chr6 155335768 155336006 -27079236 + L2 LINE L2 572 828 -2486 22 0 0 0 chr6 155336006 155336028 -27079214 + AT_rich Low_complexity Low_complexity 1 22 0 243 344 146 72 chr6 155337510 155338465 -27076777 - L2 LINE L2 -358 2956 1932 4330 210 32 11 chr6 155338498 155339875 -27075367 - L1M1 LINE L1 -4065 1263 474 685 249 24 0 chr6 155339868 155340037 -27075205 - L1M1 LINE L1 -5142 186 14 * 1000 176 63 129 chr6 155340048 155340412 -27074830 - MLT1A2 LTR MaLR -34 340 1 213 343 97 0 chr6 155340490 155340665 -27074577 - L2 LINE L2 -1497 1817 1626 1374 208 24 24 chr6 155341219 155341508 -27073734 + AluJo SINE Alu 1 289 -13 261 0 0 0 chr6 155341986 155342015 -27073227 + (TA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr6 155342455 155342478 -27072764 + AT_rich Low_complexity Low_complexity 1 23 0 474 219 194 19 chr6 155343098 155343253 -27071989 - MER5A DNA MER1_type -7 182 1 301 385 0 15 chr6 155343574 155343709 -27071533 + L2 LINE L2 3180 3312 -1 252 0 0 0 chr6 155343953 155343981 -27071261 + (A)n Simple_repeat Simple_repeat 1 28 0 246 288 64 48 chr6 155344176 155344301 -27070941 + MIR3 SINE MIR 14 140 -68 193 135 108 0 chr6 155346377 155346414 -27068828 + L2 LINE L2 3271 3311 -2 2497 147 34 52 chr6 155346718 155347194 -27068048 + MLT1C LTR MaLR 1 467 0 2373 202 110 12 chr6 155347395 155347855 -27067387 + MLT2B3 LTR ERVL 1 515 -39 468 0 0 0 chr6 155347855 155347907 -27067335 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 2373 202 110 12 chr6 155347907 155347947 -27067295 + MLT2B3 LTR ERVL 515 550 -4 24 0 0 0 chr6 155347948 155347972 -27067270 + AT_rich Low_complexity Low_complexity 1 24 0 581 316 143 0 chr6 155347994 155348203 -27067039 - MIR SINE MIR -19 243 5 335 280 105 28 chr6 155349285 155349428 -27065814 + MIR SINE MIR 12 165 -97 290 299 11 0 chr6 155350536 155350623 -27064619 - MER5B DNA MER1_type 0 178 91 571 308 98 44 chr6 155350751 155351089 -27064153 + L2 LINE L2 2838 3193 -120 277 290 50 30 chr6 155351656 155351756 -27063486 - MIR3 SINE MIR -10 198 97 216 282 12 82 chr6 155351939 155352024 -27063218 + MER5A DNA MER1_type 110 188 -1 29 28 0 0 chr6 155352582 155352618 -27062624 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr6 155352915 155352944 -27062298 + AT_rich Low_complexity Low_complexity 1 29 0 268 339 17 17 chr6 155353236 155353351 -27061891 + L2 LINE L2 3199 3313 0 571 304 52 5 chr6 155354508 155354702 -27060540 - Charlie8 DNA MER1_type -2214 203 1 237 273 143 30 chr6 155354708 155354862 -27060380 + MIR3 SINE MIR 1 169 -39 211 326 68 30 chr6 155355605 155355737 -27059505 + MIR SINE MIR 76 212 -50 793 143 0 0 chr6 155356077 155356210 -27059032 - L1PB1 LINE L1 -1 6150 6018 12192 129 26 13 chr6 155356464 155358441 -27056801 - Tigger1 DNA MER2_type 0 2418 416 5227 133 1 0 chr6 155358447 155359213 -27056029 - L1PA15 LINE L1 -4 6161 5395 2185 174 8 0 chr6 155359215 155359583 -27055659 - Tigger1 DNA MER2_type -2006 412 42 6585 64 6 33 chr6 155359652 155360739 -27054503 + L1PA7 LINE L1 5123 6184 0 205 211 0 0 chr6 155362418 155362456 -27052786 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 1100 67 0 0 chr6 155362876 155363011 -27052231 + AluSg/x SINE Alu 165 299 -13 25 31 0 0 chr6 155363244 155363276 -27051966 + AT_rich Low_complexity Low_complexity 1 32 0 630 249 88 17 chr6 155363545 155363726 -27051516 + MIR SINE MIR 9 202 -60 239 335 70 43 chr6 155364050 155364235 -27051007 + L3 LINE CR1 1262 1451 -126 3566 163 27 5 chr6 155364260 155364897 -27050345 - L1PA16 LINE L1 0 6166 5516 261 0 0 0 chr6 155364970 155364999 -27050243 + (GA)n Simple_repeat Simple_repeat 2 30 0 2439 57 0 7 chr6 155366318 155366616 -27048626 - AluY SINE Alu -15 296 1 296 314 88 25 chr6 155367273 155367432 -27047810 + MER5A DNA MER1_type 17 185 -4 216 0 0 0 chr6 155367535 155367559 -27047683 + (CATTA)n Simple_repeat Simple_repeat 2 25 0 411 264 154 46 chr6 155367988 155368185 -27047057 - MIR SINE MIR -1 261 43 212 342 53 0 chr6 155368237 155368313 -27046929 - L2 LINE L2 -32 3240 3161 234 351 110 7 chr6 155368516 155368670 -27046572 - MIR SINE MIR -36 226 57 1129 283 78 24 chr6 155369822 155370204 -27045038 - LTR16A LTR ERVL -30 420 18 223 375 12 0 chr6 155371026 155371106 -27044136 - L2 LINE L2 -4 3268 3188 23 92 0 0 chr6 155371746 155371811 -27043431 + AT_rich Low_complexity Low_complexity 1 65 0 723 315 66 7 chr6 155373491 155373780 -27041462 - L2 LINE L2 -2 3311 3006 1977 176 55 24 chr6 155373784 155374205 -27041037 - MLT1C LTR MaLR 0 467 34 1699 265 95 17 chr6 155374263 155374961 -27040281 - L2 LINE L2 -311 3002 2245 185 323 15 15 chr6 155375950 155376015 -27039227 - L2 LINE L2 -2 3311 3247 1306 177 52 38 chr6 155377061 155377379 -27037863 - MER61B LTR ERV1 -5 774 1 632 174 186 0 chr6 155379326 155379498 -27035744 + L1MC4 LINE L1 7839 8042 0 21 0 0 0 chr6 155380085 155380106 -27035136 + AT_rich Low_complexity Low_complexity 1 21 0 2067 143 0 0 chr6 155380366 155380659 -27034583 - AluSx SINE Alu -19 293 1 250 353 59 11 chr6 155380744 155380931 -27034311 + L2 LINE L2 2458 2653 -661 14649 110 2 2 chr6 155380948 155383116 -27032126 - L1P LINE L1 -1503 4643 2476 21 36 0 0 chr6 155383396 155383424 -27031818 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 155383436 155383464 -27031778 + AT_rich Low_complexity Low_complexity 1 28 0 4918 193 22 32 chr6 155385444 155386564 -27028678 - L1MD2 LINE L1 -15 6344 5236 2165 242 32 32 chr6 155387171 155387738 -27027504 + MLT1E LTR MaLR 27 593 0 460 314 78 27 chr6 155387765 155388099 -27027143 - L1ME LINE L1 -393 5728 5378 358 319 72 38 chr6 155389596 155389831 -27025411 - L2 LINE L2 -195 3077 2835 928 236 147 28 chr6 155390253 155390579 -27024663 - MLT1A1 LTR MaLR 0 365 1 228 264 55 33 chr6 155393839 155393930 -27021312 + L2 LINE L2 3178 3270 -2 418 248 18 18 chr6 155394053 155394162 -27021080 - L3 LINE CR1 -80 1497 1389 573 145 0 43 chr6 155394357 155394474 -27020768 - L1MA10 LINE L1 0 6334 6223 336 255 51 0 chr6 155394510 155394608 -27020634 - MIR3 SINE MIR -23 185 83 23 0 0 0 chr6 155395348 155395371 -27019871 + AT_rich Low_complexity Low_complexity 1 23 0 2442 127 19 3 chr6 155396826 155397195 -27018047 + THE1C LTR MaLR 1 375 0 1689 163 39 3 chr6 155397307 155397589 -27017653 + AluJb SINE Alu 1 292 -20 984 273 79 43 chr6 155397812 155398457 -27016785 - L1MB8 LINE L1 -226 5952 5285 360 294 179 34 chr6 155398489 155399026 -27016216 - L1MB8 LINE L1 -971 5175 4561 1296 199 41 22 chr6 155399036 155399307 -27015935 + AluJo SINE Alu 18 293 -19 205 160 9 47 chr6 155399985 155400091 -27015151 + (TAA)n Simple_repeat Simple_repeat 3 104 0 337 341 78 34 chr6 155400308 155400716 -27014526 + L2 LINE L2 2036 2461 -853 813 251 88 25 chr6 155401588 155401827 -27013415 + LTR16A LTR ERVL 196 449 -1 2692 42 0 0 chr6 155402362 155402669 -27012573 + AluY SINE Alu 1 307 -4 301 325 71 8 chr6 155402922 155403048 -27012194 + L1ME3A LINE L1 5757 5890 -280 326 300 29 18 chr6 155403150 155403320 -27011922 + L1ME3A LINE L1 5988 6159 -11 362 353 53 11 chr6 155403979 155404169 -27011073 - MIR3 SINE MIR -6 202 5 281 371 86 6 chr6 155406265 155406440 -27008802 - MIR SINE MIR -70 192 4 2220 137 31 17 chr6 155406458 155406815 -27008427 + THE1B LTR MaLR 3 364 0 11565 92 11 3 chr6 155406815 155408382 -27006860 + THE1B-int LTR MaLR 1 1580 0 2214 148 28 17 chr6 155408383 155408742 -27006500 + THE1B LTR MaLR 2 364 0 206 224 255 31 chr6 155409448 155409546 -27005696 + MIR SINE MIR 28 147 -115 * 460 300 234 19 chr6 155409544 155410005 -27005237 - L2 LINE L2 -4 3309 2739 192 289 92 0 chr6 155410018 155410094 -27005148 + MIR SINE MIR 170 252 -10 261 323 88 26 chr6 155412548 155412855 -27002387 + L1ME LINE L1 5566 5891 -230 209 297 81 0 chr6 155412989 155413063 -27002179 - MIR SINE MIR -58 204 125 356 226 129 0 chr6 155413329 155413422 -27001820 + MIR SINE MIR 86 190 -72 258 156 0 0 chr6 155413422 155413467 -27001775 + (CA)n Simple_repeat Simple_repeat 1 45 0 191 300 0 0 chr6 155413553 155413603 -27001639 + MIR SINE MIR 213 262 0 23 33 0 0 chr6 155413794 155413824 -27001418 + AT_rich Low_complexity Low_complexity 1 30 0 336 243 127 63 chr6 155413912 155414180 -27001062 - L1M4 LINE L1 -1785 4361 4077 1721 157 0 22 chr6 155414193 155414460 -27000782 - AluSx SINE Alu -51 261 1 238 335 44 27 chr6 155414461 155414754 -27000488 - L1M4 LINE L1 -2142 4004 3707 378 286 57 62 chr6 155414887 155415345 -26999897 - L1M4 LINE L1 -2590 3556 3099 183 42 0 0 chr6 155415345 155415369 -26999873 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 378 286 57 62 chr6 155415369 155415387 -26999855 - L1M4 LINE L1 -3047 3099 3082 207 200 0 71 chr6 155415724 155415809 -26999433 + T-rich Low_complexity Low_complexity 4 82 0 22 0 0 0 chr6 155416305 155416327 -26998915 + AT_rich Low_complexity Low_complexity 1 22 0 2487 80 0 0 chr6 155416331 155416642 -26998600 - AluY SINE Alu 0 311 1 22991 46 4 0 chr6 155416644 155420302 -26994940 - L1PA5 LINE L1 -3 6151 2485 24 32 0 0 chr6 155420340 155420371 -26994871 + AT_rich Low_complexity Low_complexity 1 31 0 455 308 104 66 chr6 155420372 155421039 -26994203 - HAL1 LINE L1 -922 1585 887 2277 101 7 0 chr6 155421039 155421346 -26993896 - AluSg SINE Alu -1 309 1 455 308 104 66 chr6 155421346 155421401 -26993841 - HAL1 LINE L1 -1620 887 836 188 214 18 0 chr6 155423608 155423664 -26991578 + CT-rich Low_complexity Low_complexity 4 60 0 221 191 133 105 chr6 155474397 155474502 -26940740 + MIR SINE MIR 84 191 -71 199 340 50 20 chr6 155474502 155474602 -26940640 + L2 LINE L2 3192 3294 -19 217 329 0 14 chr6 155474604 155474674 -26940568 + MIR SINE MIR 193 261 -1 * 274 373 48 8 chr6 155474664 155474790 -26940452 + L3 LINE CR1 1384 1514 -63 247 304 14 0 chr6 155475320 155475389 -26939853 + MIR SINE MIR 45 114 -148 2298 158 40 25 chr6 155476358 155476835 -26938407 - L1MC2 LINE L1 -11 7756 6138 1596 89 78 14 chr6 155476835 155477154 -26938088 - Tigger4(Zombi) DNA MER2_type -1 2730 2 267 159 0 0 chr6 155477154 155477198 -26938044 - L1MC3 LINE L1 -494 7291 7248 2268 75 7 13 chr6 155477985 155478290 -26936952 - AluY SINE Alu -8 303 1 1205 186 76 27 chr6 155478363 155478626 -26936616 + AluJb SINE Alu 29 304 -8 201 321 49 25 chr6 155479987 155480068 -26935174 + L2 LINE L2 3225 3307 -6 971 266 51 79 chr6 155481478 155481910 -26933332 - MLT1J LTR MaLR -90 421 2 272 268 72 21 chr6 155482043 155482140 -26933102 + MIR3 SINE MIR 107 208 0 392 325 107 24 chr6 155482705 155482874 -26932368 - L3 LINE CR1 -6 1571 1389 837 306 91 8 chr6 155483105 155483458 -26931784 - MLT1I LTR MaLR 0 409 28 1614 161 0 95 chr6 155484417 155484753 -26930489 - AluSx SINE Alu -8 304 1 837 305 96 19 chr6 155485205 155485579 -26929663 - MLT1I LTR MaLR -3 406 4 22 56 0 0 chr6 155485712 155485748 -26929494 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr6 155486139 155486168 -26929074 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 155486214 155486237 -26929005 + AT_rich Low_complexity Low_complexity 1 23 0 195 300 14 29 chr6 155487393 155487463 -26927779 - L2 LINE L2 0 3272 3204 209 303 5 18 chr6 155488138 155488203 -26927039 - MIR SINE MIR -129 79 14 534 385 52 48 chr6 155488367 155488999 -26926243 + L1MEd LINE L1 122 756 -5363 323 373 0 7 chr6 155489139 155489281 -26925961 + L2 LINE L2 2503 2643 -671 376 293 82 75 chr6 155489515 155489833 -26925409 + L2 LINE L2 2915 3234 -38 225 316 167 26 chr6 155490823 155490937 -26924305 + MIR SINE MIR 15 144 -118 444 201 188 0 chr6 155491143 155491287 -26923955 - MER112 DNA MER1_type -14 246 76 2150 285 89 12 chr6 155491288 155492095 -26923147 - L2 LINE L2 -598 2716 1848 502 296 111 39 chr6 155492127 155492695 -26922547 - L1ME3 LINE L1 -235 5927 5319 662 267 186 5 chr6 155493308 155493529 -26921713 + MIR SINE MIR 2 262 0 397 276 41 24 chr6 155494420 155494543 -26920699 - MER94 DNA DNA -6 128 4 2256 67 6 58 chr6 155494767 155495080 -26920162 - AluY SINE Alu -14 297 1 907 194 21 31 chr6 155495083 155495274 -26919968 + MER5A DNA MER1_type 1 189 0 183 339 34 85 chr6 155495361 155495479 -26919763 - L2 LINE L2 -34 3238 3127 454 214 17 17 chr6 155495750 155495867 -26919375 + MER103 DNA DNA 4 120 -46 763 323 22 11 chr6 155495978 155496247 -26918995 - HERV16 LTR ERVL -2193 2803 2532 1996 137 80 34 chr6 155496272 155496660 -26918582 + L1MA10 LINE L1 5927 6332 -2 1439 335 71 13 chr6 155496666 155497283 -26917959 - HERV16 LTR ERVL -2490 2506 1854 1470 313 72 55 chr6 155497485 155498213 -26917029 - HERV16 LTR ERVL -3579 1417 654 1705 120 9 0 chr6 155498213 155498446 -26916796 + AluSp SINE Alu 3 237 -76 1470 313 72 55 chr6 155498446 155499108 -26916134 - HERV16 LTR ERVL -4342 654 4 974 280 61 63 chr6 155499111 155499490 -26915752 - LTR16B LTR ERVL 0 464 87 672 231 44 108 chr6 155499788 155499819 -26915423 - MIR SINE MIR -26 236 205 1463 223 39 11 chr6 155499819 155500174 -26915068 - MLT1A1 LTR MaLR 0 365 1 672 231 44 108 chr6 155500174 155500393 -26914849 - MIR SINE MIR -57 205 2 478 279 12 52 chr6 155500752 155500951 -26914291 + MIR SINE MIR 32 223 -39 226 358 0 0 chr6 155501137 155501204 -26914038 + MIR SINE MIR 40 106 -102 373 290 58 68 chr6 155501341 155501389 -26913853 - MLT1J2 LTR MaLR -2 448 401 2239 47 11 0 chr6 155501389 155501720 -26913522 + AluY SINE Alu 1 334 0 373 290 58 68 chr6 155501720 155501877 -26913365 - MLT1J2 LTR MaLR -49 401 244 236 261 45 23 chr6 155501924 155502012 -26913230 - MLT1J1 LTR MaLR -291 155 66 4540 101 28 48 chr6 155505099 155506005 -26909237 - L1PA14 LINE L1 0 6161 5217 199 275 99 49 chr6 155506220 155506362 -26908880 + MIR SINE MIR 32 180 -82 223 273 0 15 chr6 155507132 155507198 -26908044 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 204 381 71 16 chr6 155507546 155507672 -26907570 - MIR SINE MIR -110 152 20 261 258 21 41 chr6 155508757 155508854 -26906388 + MIR SINE MIR 126 220 -42 1217 233 17 53 chr6 155510338 155510750 -26904492 - MLT2C1 LTR ERVL 0 397 1 189 376 65 0 chr6 155511395 155511488 -26903754 - L2 LINE L2 -16 3297 3199 198 357 0 71 chr6 155511961 155512045 -26903197 + L2 LINE L2 3168 3245 -27 2303 194 84 29 chr6 155512099 155512136 -26903106 - MLT2B3 LTR ERVL 0 554 520 605 37 0 12 chr6 155512136 155512217 -26903025 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 2303 194 84 29 chr6 155512217 155512704 -26902538 - MLT2B3 LTR ERVL -34 520 1 354 330 131 11 chr6 155512748 155512939 -26902303 - L2 LINE L2 -71 3242 3029 181 298 35 101 chr6 155513213 155513411 -26901831 - L2 LINE L2 -223 3049 2865 23 92 0 0 chr6 155514057 155514122 -26901120 + AT_rich Low_complexity Low_complexity 1 65 0 601 96 0 32 chr6 155514139 155514233 -26901009 + L1MA1 LINE L1 6204 6294 -8 2369 81 0 3 chr6 155514234 155514532 -26900710 - AluY SINE Alu -14 297 1 205 93 93 0 chr6 155514599 155514642 -26900600 + (TATG)n Simple_repeat Simple_repeat 2 48 0 245 256 11 44 chr6 155516055 155516145 -26899097 - L2 LINE L2 0 3313 3227 452 249 26 28 chr6 155516468 155516616 -26898626 - MIR SINE MIR -62 146 42 337 216 67 164 chr6 155517939 155518208 -26897034 - MER112 DNA MER1_type 0 260 18 231 36 0 0 chr6 155518383 155518411 -26896831 + (TG)n Simple_repeat Simple_repeat 1 28 0 230 296 195 49 chr6 155519184 155519410 -26895832 - L2 LINE L2 -81 3191 2933 1358 249 46 0 chr6 155519632 155519669 -26895573 - MER58B DNA MER1_type -2079 341 307 4194 68 0 7 chr6 155519669 155520216 -26895026 - L1PA7 LINE L1 -2 6152 5610 1358 249 46 0 chr6 155520216 155520503 -26894739 - MER58B DNA MER1_type -2113 307 2 1212 251 101 81 chr6 155520816 155521271 -26893971 - MLT2B1 LTR ERVL 0 464 1 26 50 0 0 chr6 155522344 155522384 -26892858 + AT_rich Low_complexity Low_complexity 1 40 0 313 311 49 30 chr6 155524511 155524675 -26890567 + MLT1L LTR MaLR 103 269 -346 216 298 35 7 chr6 155525590 155525731 -26889511 + (TA)n Simple_repeat Simple_repeat 2 146 0 711 110 17 168 chr6 155525782 155525955 -26889287 - L1MC1 LINE L1 -154 6179 6033 1343 232 71 29 chr6 155526660 155527040 -26888202 - MSTD LTR MaLR 0 396 1 908 93 0 0 chr6 155527641 155527759 -26887483 - AluSp SINE Alu -195 118 1 189 296 70 28 chr6 155527783 155527854 -26887388 + MIR3 SINE MIR 92 165 -43 327 259 309 15 chr6 155528243 155528444 -26886798 - MIR SINE MIR 0 262 3 6431 152 17 0 chr6 155528685 155529815 -26885427 + L1MC1 LINE L1 5186 6333 0 419 198 49 0 chr6 155529870 155529951 -26885291 - L1MCc LINE L1 -2001 4940 4856 1346 279 92 10 chr6 155530027 155530623 -26884619 - L1MCc LINE L1 -2091 4850 4206 1935 165 12 57 chr6 155530623 155530863 -26884379 - MLT1B LTR MaLR -2 388 172 2055 95 20 0 chr6 155530863 155531167 -26884075 - L1MA2 LINE L1 0 6304 5995 1935 165 12 57 chr6 155531167 155531332 -26883910 - MLT1B LTR MaLR -218 172 1 1102 281 53 0 chr6 155531338 155531754 -26883488 - L1MCc LINE L1 -2735 4206 3769 513 242 111 0 chr6 155531754 155531930 -26883312 - MER63A DNA MER1_type 0 210 12 1616 289 19 12 chr6 155531944 155532514 -26882728 - L1MCc LINE L1 -3167 3774 3205 359 224 186 0 chr6 155532514 155532670 -26882572 - L1MB7 LINE L1 -275 5909 2315 * 1199 269 134 28 chr6 155532665 155533230 -26882012 - L1MCc LINE L1 -3997 3125 2622 1600 189 29 4 chr6 155533230 155533511 -26881731 - AluSx SINE Alu -24 288 1 1199 269 134 28 chr6 155533511 155534177 -26881065 - L1MCc LINE L1 -4500 2622 2028 396 0 0 0 chr6 155534177 155534221 -26881021 + (TG)n Simple_repeat Simple_repeat 2 45 0 1199 269 134 28 chr6 155534221 155534584 -26880658 - L1MCc LINE L1 -5094 2028 1172 354 183 0 0 chr6 155534720 155534780 -26880462 - Charlie5 DNA MER1_type -2545 67 8 712 298 55 15 chr6 155534804 155535076 -26880166 - L1MCc LINE L1 -5327 1096 814 488 311 90 30 chr6 155535256 155535658 -26879584 - L1MCc LINE L1 -5906 517 92 53 93 0 0 chr6 155535908 155536059 -26879183 + AT_rich Low_complexity Low_complexity 1 151 0 336 302 134 7 chr6 155537876 155538025 -26877217 + L2 LINE L2 3104 3271 -1 180 313 0 75 chr6 155538178 155538245 -26876997 - L3 LINE CR1 -2 1575 1514 1099 257 163 13 chr6 155538739 155539187 -26876055 - LTR33 LTR ERVL -2 519 5 236 269 161 0 chr6 155540500 155540593 -26874649 - L2 LINE L2 -270 3002 2895 201 285 28 26 chr6 155540650 155540805 -26874437 - MIR SINE MIR -7 255 28 6409 84 25 11 chr6 155542021 155542915 -26872327 - MER11B LTR ERVK -330 906 1 2112 134 0 7 chr6 155545942 155546247 -26868995 + AluSx SINE Alu 1 303 -9 266 0 29 0 chr6 155546247 155546281 -26868961 + (TG)n Simple_repeat Simple_repeat 2 36 0 335 187 30 45 chr6 155546281 155546415 -26868827 + (TATAA)n Simple_repeat Simple_repeat 5 136 0 257 167 0 17 chr6 155546581 155546641 -26868601 + CT-rich Low_complexity Low_complexity 4 62 0 1849 148 78 28 chr6 155546783 155547140 -26868102 + THE1C LTR MaLR 1 375 0 9624 131 10 43 chr6 155547164 155548751 -26866491 + THE1C-int LTR MaLR 46 1580 0 1547 169 47 38 chr6 155548754 155549073 -26866169 + THE1C LTR MaLR 4 325 -50 439 261 104 0 chr6 155549132 155549247 -26865995 - MIR SINE MIR -117 145 19 869 282 157 19 chr6 155550167 155550696 -26864546 + L2 LINE L2 2688 3312 -1 214 308 0 0 chr6 155550777 155550829 -26864413 - L2 LINE L2 -222 3050 2999 1719 117 98 8 chr6 155550831 155551095 -26864147 + AluSx SINE Alu 1 288 -24 2249 111 0 0 chr6 155551255 155551544 -26863698 + AluSc SINE Alu 1 289 -20 30 27 0 0 chr6 155551559 155551596 -26863646 + AT_rich Low_complexity Low_complexity 1 37 0 589 254 35 86 chr6 155552965 155553221 -26862021 + MER112 DNA MER1_type 4 246 -14 193 356 84 47 chr6 155554038 155554397 -26860845 + L2 LINE L2 1533 1904 -1410 380 269 131 0 chr6 155554599 155554759 -26860483 + MIR SINE MIR 47 227 -35 200 226 16 0 chr6 155555949 155556011 -26859231 + (TATG)n Simple_repeat Simple_repeat 2 64 0 1086 206 85 47 chr6 155556028 155556417 -26858825 - MLT2B1 LTR ERVL -40 480 1 807 241 0 0 chr6 155556989 155557159 -26858083 - FRAM SINE Alu -6 170 1 184 394 91 0 chr6 155557323 155557422 -26857820 + L2 LINE L2 3163 3270 -2 3428 178 32 1 chr6 155557773 155558430 -26856812 - L1MB1 LINE L1 -18 6171 5494 249 57 0 0 chr6 155558430 155558465 -26856777 + (TA)n Simple_repeat Simple_repeat 1 35 0 5180 99 96 2 chr6 155558485 155559290 -26855952 - L1PA8 LINE L1 0 6172 5293 207 0 0 0 chr6 155559290 155559313 -26855929 + (T)n Simple_repeat Simple_repeat 1 23 0 286 327 40 0 chr6 155559345 155559446 -26855796 + L2 LINE L2 3137 3241 -31 207 209 0 0 chr6 155560548 155560591 -26854651 + A-rich Low_complexity Low_complexity 1 43 0 306 261 45 0 chr6 155561062 155561173 -26854069 + (TA)n Simple_repeat Simple_repeat 2 117 0 366 280 155 56 chr6 155561348 155561940 -26853302 + L1ME4a LINE L1 5402 6052 -69 30 45 0 0 chr6 155562908 155562952 -26852290 + AT_rich Low_complexity Low_complexity 1 44 0 192 40 0 0 chr6 155562985 155563010 -26852232 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 5156 169 23 1 chr6 155563039 155564356 -26850886 - L1PB4 LINE L1 -27 6129 4781 2167 111 3 3 chr6 155564384 155564673 -26850569 + AluSc SINE Alu 1 289 -20 24 32 0 0 chr6 155564747 155564778 -26850464 + AT_rich Low_complexity Low_complexity 1 31 0 4272 85 15 15 chr6 155565353 155565880 -26849362 - L1PA11 LINE L1 -3 6171 5645 2591 91 101 12 chr6 155565880 155566096 -26849146 - MLT2A1 LTR ERVL 0 444 248 591 60 0 0 chr6 155566096 155566180 -26849062 + (GGCTG)n Simple_repeat Simple_repeat 2 85 0 486 0 0 0 chr6 155566182 155566236 -26849006 + (TCTCG)n Simple_repeat Simple_repeat 2 55 0 2591 91 101 12 chr6 155566236 155566424 -26848818 - MLT2A1 LTR ERVL -196 248 1 4272 85 15 15 chr6 155566424 155566506 -26848736 - L1PA11 LINE L1 -528 5646 5562 273 254 45 0 chr6 155566979 155567046 -26848196 + L2 LINE L2 3201 3270 -2 1395 129 73 4 chr6 155567241 155567489 -26847753 + L1 LINE L1 4642 4906 -1240 1870 153 59 6 chr6 155567996 155568316 -26846926 + MER1B DNA MER1_type 1 337 0 189 102 265 0 chr6 155568335 155568384 -26846858 + L3 LINE CR1 1132 1193 -384 213 39 0 0 chr6 155569290 155569316 -26845926 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 * 1210 82 0 16 chr6 155569315 155569498 -26845744 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2031 138 0 3 chr6 155569316 155569779 -26845463 - AluSg SINE Alu -28 282 1 1192 147 0 0 chr6 155573351 155573528 -26841714 + AluY SINE Alu 128 304 -7 234 0 0 0 chr6 155573654 155573680 -26841562 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 284 148 16 0 chr6 155573984 155574045 -26841197 + CT-rich Low_complexity Low_complexity 1 62 0 22 0 0 0 chr6 155574312 155574334 -26840908 + AT_rich Low_complexity Low_complexity 1 22 0 188 200 20 0 chr6 155574440 155574490 -26840752 + GA-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr6 155575032 155575053 -26840189 + AT_rich Low_complexity Low_complexity 1 21 0 1552 169 21 31 chr6 155575294 155575584 -26839658 + AluJo SINE Alu 1 287 -25 273 29 0 0 chr6 155575588 155575622 -26839620 + (CAATA)n Simple_repeat Simple_repeat 2 35 0 1776 212 114 59 chr6 155575713 155576256 -26838986 + MER77 LTR ERV1 12 584 -21 22 0 0 0 chr6 155576331 155576353 -26838889 + AT_rich Low_complexity Low_complexity 1 22 0 238 343 67 27 chr6 155576641 155576882 -26838360 - MIR SINE MIR -11 251 7 2157 112 0 26 chr6 155576969 155577274 -26837968 + AluSx SINE Alu 1 297 -15 1158 83 0 0 chr6 155577336 155577480 -26837762 - AluY SINE Alu -167 144 1 463 253 63 18 chr6 155577480 155578193 -26837049 - L1MEc LINE L1 -2639 3743 2968 515 292 73 14 chr6 155578193 155578612 -26836630 - L1MEc LINE L1 -4726 1837 1243 335 336 60 17 chr6 155578610 155578842 -26836400 - L1MEc LINE L1 -6072 491 250 * 1460 186 0 37 chr6 155579104 155579400 -26835842 - AluJo SINE Alu -23 289 5 326 328 103 17 chr6 155579710 155579884 -26835358 + MIR3 SINE MIR 7 195 -13 238 296 64 48 chr6 155580369 155580494 -26834748 - L2 LINE L2 -43 3229 3103 743 287 155 18 chr6 155580583 155580963 -26834279 + L2 LINE L2 2881 3312 -1 409 206 45 77 chr6 155581596 155581751 -26833491 + MLT1H LTR MaLR 377 526 -23 642 289 95 4 chr6 155582090 155582322 -26832920 - MIR SINE MIR -1 261 9 1901 141 49 35 chr6 155582979 155583349 -26831893 + THE1C LTR MaLR 1 375 0 219 338 25 0 chr6 155583524 155583604 -26831638 - L3 LINE CR1 -1 1576 1495 450 335 146 27 chr6 155583661 155584073 -26831169 + L2 LINE L2 2326 2786 -528 342 188 72 0 chr6 155584162 155584231 -26831011 + MIR SINE MIR 160 233 -29 247 247 82 96 chr6 155584267 155584413 -26830829 + L2 LINE L2 3165 3308 -5 1344 277 12 3 chr6 155586144 155586483 -26828759 + MLT1D LTR MaLR 164 505 0 1569 234 106 9 chr6 155586483 155586936 -26828306 + MLT1D-int LTR MaLR 1 497 -874 2248 112 0 0 chr6 155586968 155587281 -26827961 - AluSq SINE Alu 0 313 1 6041 180 49 3 chr6 155587284 155588442 -26826800 + Tigger3b DNA MER2_type 21 1231 0 478 161 109 132 chr6 155588442 155588616 -26826626 + MLT1D-int LTR MaLR 491 660 -711 1925 215 56 128 chr6 155588670 155589436 -26825806 + MLT1D-int LTR MaLR 661 1371 0 494 224 0 37 chr6 155589436 155589570 -26825672 + MLT1D LTR MaLR 1 197 -398 27 0 0 0 chr6 155589750 155589777 -26825465 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr6 155589854 155589881 -26825361 + AT_rich Low_complexity Low_complexity 1 27 0 4134 209 50 21 chr6 155590069 155591769 -26823473 + L1MB5 LINE L1 4442 6174 0 425 274 92 57 chr6 155592183 155592958 -26822284 - L1MEc LINE L1 -2607 3608 2807 401 319 73 47 chr6 155593199 155593516 -26821726 - L1MEc LINE L1 -3706 2509 2185 2090 110 0 36 chr6 155593694 155594003 -26821239 - AluSx SINE Alu -9 303 6 3540 104 30 2 chr6 155594221 155594757 -26820485 - L1PA14 LINE L1 -18 6143 5593 1653 154 20 7 chr6 155594757 155595061 -26820181 - L1MA7 LINE L1 0 6291 5982 2317 92 0 0 chr6 155595640 155595935 -26819307 - AluY SINE Alu -16 295 1 291 289 55 119 chr6 155597493 155597694 -26817548 + L2 LINE L2 2915 3102 -211 1759 298 51 16 chr6 155597784 155598412 -26816830 - L1MEc LINE L1 -5566 830 181 22 35 0 0 chr6 155598596 155598625 -26816617 + AT_rich Low_complexity Low_complexity 1 29 0 355 338 87 10 chr6 155600524 155600731 -26814511 + L2 LINE L2 2836 3058 -214 1576 176 42 0 chr6 155600854 155601015 -26814227 - AluJb SINE Alu -19 293 115 279 0 0 0 chr6 155601015 155601046 -26814196 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1576 176 42 0 chr6 155601046 155601146 -26814096 - AluJb SINE Alu -197 115 21 285 303 101 8 chr6 155601173 155601292 -26813950 + L2 LINE L2 3116 3245 -27 559 118 29 0 chr6 155601312 155601414 -26813828 + GA-rich Low_complexity Low_complexity 3 107 0 2052 156 80 60 chr6 155601814 155602314 -26812928 + MER67D LTR ERV1 1 510 -4 592 293 171 7 chr6 155605143 155605447 -26809795 - L2 LINE L2 -660 2654 2301 260 309 131 42 chr6 155606662 155606830 -26808412 + MIR SINE MIR 30 212 -50 248 254 141 70 chr6 155607106 155607590 -26807652 - L1ME4a LINE L1 -1 6120 5603 2311 102 0 0 chr6 155607592 155607887 -26807355 + AluSx SINE Alu 1 295 -17 392 363 61 8 chr6 155607989 155608251 -26806991 - L1ME4a LINE L1 -206 5915 5640 981 291 64 21 chr6 155609000 155609450 -26805792 + MLT1H LTR MaLR 28 532 -17 540 183 8 48 chr6 155610021 155610147 -26805095 - MER3 DNA MER1_type -2 207 87 * 2734 173 31 24 chr6 155610138 155610535 -26804707 - MER45R DNA AcHobo -77 1504 1100 2317 78 0 28 chr6 155610535 155610855 -26804387 + AluY SINE Alu 1 311 0 2734 173 31 24 chr6 155610855 155611071 -26804171 - MER45R DNA AcHobo -481 1100 887 443 238 0 0 chr6 155611060 155611140 -26804102 - MER3 DNA MER1_type -129 80 1 * 1520 227 39 85 chr6 155612168 155612530 -26802712 - L1ME1 LINE L1 -4 6162 5837 2029 119 0 31 chr6 155612530 155612823 -26802419 - AluSx SINE Alu 0 312 29 1520 227 39 85 chr6 155612823 155613058 -26802184 - L1ME1 LINE L1 -329 5837 5593 350 171 114 0 chr6 155613608 155613678 -26801564 + AluJo SINE Alu 66 143 -159 943 157 0 13 chr6 155613733 155613886 -26801356 + FRAM SINE Alu 18 168 -8 368 247 78 61 chr6 155614029 155614198 -26801044 + MER5B DNA MER1_type 3 188 -1 1833 210 45 62 chr6 155614440 155614954 -26800288 - MLT1D LTR MaLR 0 505 1 777 322 56 16 chr6 155616022 155616397 -26798845 - MLT1I LTR MaLR 0 409 3 21779 84 15 4 chr6 155616490 155620428 -26794814 - L1PA7 LINE L1 -14 6455 2478 4470 77 50 0 chr6 155620423 155621046 -26794196 - L1PA7 LINE L1 -5016 1445 792 * 338 73 0 18 chr6 155621046 155621101 -26794141 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 7018 31 8 2 chr6 155621101 155622548 -26792694 - L1PA4 LINE L1 -24 6131 4673 5353 108 2 34 chr6 155622547 155623363 -26791879 - L1PA7 LINE L1 -5671 790 1 * 26 50 0 0 chr6 155624334 155624374 -26790868 + AT_rich Low_complexity Low_complexity 1 40 0 3203 90 11 0 chr6 155624635 155625079 -26790163 + L1PA13 LINE L1 5713 6161 -2 1425 164 39 19 chr6 155625415 155625726 -26789516 - L1MC3 LINE L1 0 7785 7469 244 213 16 0 chr6 155626766 155626827 -26788415 + (CA)n Simple_repeat Simple_repeat 1 62 0 322 240 25 34 chr6 155626858 155626969 -26788273 + MIR SINE MIR 33 143 -65 1991 137 87 23 chr6 155628099 155628443 -26786799 - MER47A DNA MER2_type 0 366 1 1329 250 118 82 chr6 155630649 155631219 -26784023 - MLT1E2 LTR MaLR 0 624 8 519 207 40 20 chr6 155632278 155632428 -26782814 + L1MC3 LINE L1 7468 7620 -165 266 206 68 0 chr6 155632622 155632695 -26782547 - MER91C DNA MER1_type -32 108 31 183 229 62 0 chr6 155634156 155634204 -26781038 - MER5A DNA MER1_type -82 107 57 2509 124 3 3 chr6 155634249 155634613 -26780629 + THE1B LTR MaLR 1 364 0 891 238 133 50 chr6 155634713 155635133 -26780109 - LTR16A1 LTR ERVL -2 455 1 21 57 0 0 chr6 155636238 155636273 -26778969 + AT_rich Low_complexity Low_complexity 1 35 0 520 289 38 43 chr6 155636367 155636602 -26778640 + L1ME LINE L1 5460 5693 -428 638 107 0 0 chr6 155638901 155638985 -26776257 + 5S rRNA rRNA 7 90 -31 2321 110 0 0 chr6 155639011 155639319 -26775923 - AluSg SINE Alu -2 308 1 513 343 21 26 chr6 155640962 155641195 -26774047 + MIR SINE MIR 14 245 -17 4590 200 60 108 chr6 155641252 155642158 -26773084 - L1MC3 LINE L1 -1 7784 6874 603 118 10 39 chr6 155642158 155642260 -26772982 - AluSg/x SINE Alu -28 281 183 4590 200 60 108 chr6 155642260 155642790 -26772452 - L1MC3 LINE L1 -911 6874 6320 2239 119 3 0 chr6 155643274 155643586 -26771656 - AluSp SINE Alu 0 313 1 181 296 19 0 chr6 155645766 155645820 -26769422 + MIR SINE MIR 42 96 -166 576 232 177 0 chr6 155645914 155646151 -26769091 + L1M4 LINE L1 4229 4507 -1639 532 233 42 0 chr6 155646161 155646281 -26768961 + L1ME3 LINE L1 6037 6161 -1 193 267 50 0 chr6 155647414 155647474 -26767768 + MIR SINE MIR 124 186 -76 2214 61 0 51 chr6 155647520 155647856 -26767386 - AluY SINE Alu 0 321 1 522 310 50 58 chr6 155647881 155648245 -26766997 + L2 LINE L2 2945 3305 -8 270 269 0 0 chr6 155648308 155648375 -26766867 + (TA)n Simple_repeat Simple_repeat 1 67 0 383 278 103 8 chr6 155651897 155652023 -26763219 - MIR SINE MIR -65 197 60 2042 138 0 7 chr6 155652118 155652407 -26762835 - AluSx SINE Alu -25 287 1 183 42 0 0 chr6 155654139 155654163 -26761079 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 292 309 64 0 chr6 155654168 155654278 -26760964 + MER117 DNA MER1_type 1 117 -80 1690 222 22 17 chr6 155654704 155655065 -26760177 - MLT1A1 LTR MaLR 0 365 3 234 200 0 17 chr6 155655289 155655349 -26759893 - L1MA9 LINE L1 -53 6259 6201 224 257 81 27 chr6 155656897 155656971 -26758271 + L3 LINE CR1 1496 1573 -4 24 53 0 0 chr6 155658782 155658820 -26756422 + AT_rich Low_complexity Low_complexity 1 38 0 343 269 175 6 chr6 155658900 155659060 -26756182 - LTR33A LTR ERVL -8 515 329 357 277 134 0 chr6 155659094 155659206 -26756036 - LTR33A LTR ERVL -339 184 58 191 167 0 21 chr6 155659954 155660002 -26755240 + GA-rich Low_complexity Low_complexity 4 50 0 588 259 6 24 chr6 155660076 155660242 -26755000 - MIR SINE MIR -49 213 51 218 196 0 22 chr6 155660522 155660568 -26754674 + CT-rich Low_complexity Low_complexity 5 49 0 2222 80 48 0 chr6 155660873 155661162 -26754080 + AluY SINE Alu 1 303 -8 201 226 0 0 chr6 155662041 155662094 -26753148 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 361 280 113 76 chr6 155663111 155663386 -26751856 - L1MC4 LINE L1 0 8042 7758 584 305 187 3 chr6 155664106 155664292 -26750950 + L2 LINE L2 2904 3054 -259 572 269 48 0 chr6 155664292 155664459 -26750783 - MER96 DNA MER1_type 0 175 1 584 305 187 3 chr6 155664459 155664587 -26750655 + L2 LINE L2 3054 3276 -37 279 93 0 0 chr6 155664621 155664664 -26750578 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 2788 141 11 2 chr6 155664680 155665149 -26750093 - L1MA4 LINE L1 -6 6294 5822 14317 189 27 9 chr6 155665149 155665900 -26749342 - L1MA4 LINE L1 -764 5382 4646 2398 157 53 13 chr6 155665900 155666370 -26748872 - L1PA16 LINE L1 0 6166 5678 14317 189 27 9 chr6 155666370 155668629 -26746613 - L1MA4 LINE L1 -1500 4646 2317 462 209 25 86 chr6 155668754 155668917 -26746325 + L2 LINE L2 3161 3313 0 384 320 74 0 chr6 155669542 155669664 -26745578 - L2 LINE L2 -1 3271 3141 15054 157 23 15 chr6 155669803 155671693 -26743549 - L1MA1 LINE L1 0 7721 5848 1978 144 109 28 chr6 155671693 155672089 -26743153 - MSTA LTR MaLR 0 428 1 15054 157 23 15 chr6 155672089 155675264 -26739978 - L1MA1 LINE L1 -1873 5848 2635 2338 108 13 53 chr6 155675264 155675643 -26739599 + THE1B LTR MaLR 1 364 0 9126 106 40 86 chr6 155675643 155677277 -26737965 + THE1B-int LTR MaLR 1 1559 -21 1730 124 64 21 chr6 155677277 155677559 -26737683 + THE1B LTR MaLR 71 364 0 13091 183 39 33 chr6 155677559 155680166 -26735076 - L1MA1 LINE L1 -4926 2639 18 21 0 0 0 chr6 155680345 155680366 -26734876 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 155680721 155680745 -26734497 + AT_rich Low_complexity Low_complexity 1 24 0 193 228 106 114 chr6 155681251 155681374 -26733868 - L2 LINE L2 -5 3267 3146 3765 274 56 63 chr6 155682303 155684643 -26730599 + L1MEc LINE L1 37 2360 -4036 207 360 125 7 chr6 155685798 155685934 -26729308 - L2 LINE L2 -14 3299 3148 25 51 0 0 chr6 155685995 155686034 -26729208 + AT_rich Low_complexity Low_complexity 1 39 0 300 289 62 23 chr6 155686671 155686799 -26728443 - MIR3 SINE MIR -45 163 31 272 280 53 13 chr6 155687259 155687334 -26727908 + L2 LINE L2 3195 3272 0 411 336 94 40 chr6 155689166 155689443 -26725799 - L2 LINE L2 -1 3271 2980 223 195 0 0 chr6 155690174 155690215 -26725027 + A-rich Low_complexity Low_complexity 1 41 0 6658 73 19 0 chr6 155691011 155692080 -26723162 - L1PA7 LINE L1 0 6154 5078 4399 87 3 2 chr6 155692087 155692695 -26722547 + L1PA7 LINE L1 4487 5095 -1051 398 121 30 10 chr6 155694521 155694620 -26720622 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 188 130 0 58 chr6 155695064 155695133 -26720109 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 2405 73 26 0 chr6 155695676 155695979 -26719263 + AluY SINE Alu 1 311 0 371 119 15 0 chr6 155698196 155698263 -26716979 + (TC)n Simple_repeat Simple_repeat 1 68 0 24 0 0 0 chr6 155698874 155698898 -26716344 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 155699241 155699269 -26715973 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr6 155699370 155699410 -26715832 + AT_rich Low_complexity Low_complexity 1 40 0 264 283 64 0 chr6 155700216 155700312 -26714930 + MER5B DNA MER1_type 83 174 -4 1206 119 65 0 chr6 155702295 155702496 -26712746 - L1MA5 LINE L1 -2 6298 6085 361 339 127 40 chr6 155703337 155703920 -26711322 - L2 LINE L2 -672 2642 2004 1027 205 40 105 chr6 155703920 155704168 -26711074 - MLT1A2 LTR MaLR 0 374 160 228 35 0 0 chr6 155704168 155704197 -26711045 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1027 205 40 105 chr6 155704197 155704348 -26710894 - MLT1A2 LTR MaLR -214 160 1 361 339 127 40 chr6 155704348 155704363 -26710879 - L2 LINE L2 -1310 2004 1992 2085 135 0 16 chr6 155705022 155705340 -26709902 + AluSq SINE Alu 1 313 0 557 262 79 71 chr6 155706384 155706437 -26708805 + MIR SINE MIR 1 52 -210 1616 190 33 33 chr6 155706437 155706800 -26708442 - MLT1A1 LTR MaLR -2 363 1 557 262 79 71 chr6 155706800 155706998 -26708244 + MIR SINE MIR 52 254 -8 302 65 0 22 chr6 155708022 155708068 -26707174 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 199 321 34 80 chr6 155709038 155709275 -26705967 - L2 LINE L2 -159 3113 2888 396 351 65 42 chr6 155709466 155710172 -26705070 - L2 LINE L2 0 3272 2553 356 334 75 31 chr6 155711415 155711999 -26703243 - HAL1b LINE L1 -610 738 129 3030 219 71 40 chr6 155712047 155712853 -26702389 - L1ME2 LINE L1 -9 6224 5444 2232 71 4 0 chr6 155712853 155713177 -26702065 - AluY SINE Alu 0 325 1 3030 219 71 40 chr6 155713177 155713510 -26701732 - L1ME2 LINE L1 -789 5444 5123 1314 226 48 25 chr6 155713510 155713864 -26701378 - MLT1A1 LTR MaLR 0 365 4 3030 219 71 40 chr6 155713864 155714157 -26701085 - L1ME2 LINE L1 -1110 5123 4742 440 290 89 9 chr6 155714190 155714414 -26700828 - L1ME2 LINE L1 -2099 4116 3875 578 241 42 100 chr6 155714452 155715063 -26700179 - L1ME2 LINE L1 -3788 2466 1879 250 209 87 52 chr6 155715735 155715850 -26699392 - L1ME2 LINE L1 -6252 144 26 34 65 0 0 chr6 155716816 155716878 -26698364 + AT_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr6 155717027 155717057 -26698185 + AT_rich Low_complexity Low_complexity 1 30 0 40 21 0 0 chr6 155717078 155717125 -26698117 + AT_rich Low_complexity Low_complexity 1 47 0 325 276 49 16 chr6 155717255 155717378 -26697864 - MER94 DNA DNA 0 134 8 1817 156 110 18 chr6 155718005 155718395 -26696847 - MSTA LTR MaLR 0 428 3 823 262 22 19 chr6 155719161 155719438 -26695804 + L1MC5 LINE L1 6977 7252 -727 315 232 131 26 chr6 155719533 155719778 -26695464 + L1M3 LINE L1 5502 5784 -355 286 227 8 38 chr6 155721369 155721501 -26693741 + GA-rich Low_complexity Low_complexity 3 130 0 2950 282 76 12 chr6 155722269 155723165 -26692077 - MER45C DNA AcHobo 0 953 1 207 0 0 0 chr6 155730057 155730080 -26685162 + (TTG)n Simple_repeat Simple_repeat 2 24 0 306 0 0 0 chr6 155732001 155732035 -26683207 + (TG)n Simple_repeat Simple_repeat 2 35 0 216 204 20 0 chr6 155732036 155732085 -26683157 + GA-rich Low_complexity Low_complexity 2 51 0 246 62 0 0 chr6 155733393 155733425 -26681817 + (CTG)n Simple_repeat Simple_repeat 3 34 0 21 36 0 0 chr6 155736050 155736078 -26679164 + AT_rich Low_complexity Low_complexity 1 28 0 218 254 0 42 chr6 155736831 155736902 -26678340 + A-rich Low_complexity Low_complexity 5 72 0 214 245 20 0 chr6 155737522 155737571 -26677671 - L3 LINE CR1 -229 1348 1299 289 311 0 0 chr6 155738036 155738110 -26677132 - L3 LINE CR1 -9 1568 1495 797 333 171 10 chr6 155738484 155738982 -26676260 - L3 LINE CR1 -111 1466 889 1099 257 39 32 chr6 155739009 155739421 -26675821 - LTR16C LTR ERVL -2 489 75 214 211 0 35 chr6 155739507 155739564 -26675678 + GA-rich Low_complexity Low_complexity 1 55 0 397 110 24 85 chr6 155739981 155740063 -26675179 + MADE1 DNA Mariner 1 77 -3 837 188 12 12 chr6 155740353 155740513 -26674729 + AluJo SINE Alu 104 263 -49 458 82 0 27 chr6 155740551 155740624 -26674618 + (GGGAA)n Simple_repeat Simple_repeat 1 71 0 221 147 0 0 chr6 155740624 155740658 -26674584 + (GGAGAA)n Simple_repeat Simple_repeat 5 38 0 235 257 14 0 chr6 155741265 155741339 -26673903 - L1ME LINE L1 -312 5809 5735 28 48 0 0 chr6 155741431 155741473 -26673769 + AT_rich Low_complexity Low_complexity 1 42 0 357 250 265 0 chr6 155741514 155741650 -26673592 - MIR SINE MIR -89 173 2 254 356 10 19 chr6 155742361 155742465 -26672777 + MIR SINE MIR 42 144 -64 318 87 0 0 chr6 155742630 155742676 -26672566 + (GGGGA)n Simple_repeat Simple_repeat 5 50 0 324 271 17 77 chr6 155742774 155742955 -26672287 - MLT1J2 LTR MaLR -216 234 65 327 297 0 0 chr6 155743017 155743091 -26672151 - MIR SINE MIR -118 144 71 31 44 0 0 chr6 155743538 155743583 -26671659 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr6 155744571 155744600 -26670642 + AT_rich Low_complexity Low_complexity 1 29 0 333 310 46 40 chr6 155745254 155745428 -26669814 - MER5B DNA MER1_type -3 175 1 2252 126 19 25 chr6 155745916 155746282 -26668960 - THE1B LTR MaLR 0 364 1 11078 92 25 14 chr6 155746282 155747845 -26667397 - THE1B-int LTR MaLR 0 1580 1 2204 128 19 25 chr6 155747845 155748211 -26667031 - THE1B LTR MaLR 0 364 1 245 344 0 11 chr6 155748221 155748314 -26666928 - L2 LINE L2 -1 3271 3180 24 53 0 0 chr6 155748786 155748824 -26666418 + AT_rich Low_complexity Low_complexity 1 38 0 182 119 0 48 chr6 155748832 155748874 -26666368 - MIR SINE MIR -73 189 150 230 203 14 0 chr6 155748874 155748943 -26666299 - L1MA4A LINE L1 -1 6302 6233 2566 100 60 21 chr6 155748946 155749377 -26665865 - LTR7 LTR ERV1 -2 448 1 2383 71 45 16 chr6 155749377 155749756 -26665486 - HERVH LTR ERV1 0 7713 7324 1274 134 18 5 chr6 155749756 155749973 -26665269 - HERVH LTR ERV1 -1894 5819 5600 2889 135 3 4 chr6 155749974 155750591 -26664651 - HERVH LTR ERV1 -2564 5149 4488 3076 121 4 6 chr6 155750593 155751096 -26664146 - HERVH LTR ERV1 -3720 3993 3492 775 169 20 0 chr6 155751086 155751234 -26664008 - HERVH LTR ERV1 -4423 3290 3140 * 16154 110 17 15 chr6 155751228 155754511 -26660731 - HERVH LTR ERV1 -4726 2987 1 2621 97 58 21 chr6 155754513 155754945 -26660297 - LTR7 LTR ERV1 -2 448 1 12974 198 38 16 chr6 155754945 155760859 -26654383 - L1MA4 LINE L1 -67 6415 368 324 305 28 0 chr6 155760876 155761017 -26654225 + MER103 DNA DNA 20 164 -2 644 263 50 0 chr6 155761337 155761497 -26653745 - MER5B DNA MER1_type -10 168 1 428 328 115 4 chr6 155761734 155761865 -26653377 + MIR SINE MIR 2 117 -145 185 0 40 0 chr6 155761865 155761890 -26653352 + (TAA)n Simple_repeat Simple_repeat 1 26 0 428 328 115 4 chr6 155761890 155761993 -26653249 + MIR SINE MIR 117 262 0 632 152 152 28 chr6 155762179 155762324 -26652918 + MER5B DNA MER1_type 10 172 -6 304 313 9 36 chr6 155762385 155762497 -26652745 + CT-rich Low_complexity Low_complexity 2 110 0 278 315 54 40 chr6 155762934 155763083 -26652159 - MIR SINE MIR -62 146 40 185 300 83 0 chr6 155764057 155764117 -26651125 + L2 LINE L2 3249 3313 0 2250 78 0 26 chr6 155764638 155764946 -26650296 - AluY SINE Alu -11 300 1 262 257 104 61 chr6 155765031 155765318 -26649924 + L1MC5 LINE L1 7363 7683 -278 1273 231 47 41 chr6 155765318 155765681 -26649561 - MLT1A1 LTR MaLR 0 365 1 262 257 104 61 chr6 155765681 155765903 -26649339 + L1MC5 LINE L1 7683 7894 -67 189 242 48 32 chr6 155767345 155767407 -26647835 - MIR3 SINE MIR -6 202 140 441 324 29 6 chr6 155767414 155767584 -26647658 - MIR SINE MIR -2 260 87 716 287 129 26 chr6 155767597 155767907 -26647335 + MLT1K LTR MaLR 12 353 -235 205 268 52 0 chr6 155768068 155768135 -26647107 - MIR SINE MIR -94 114 40 542 284 16 11 chr6 155768226 155768409 -26646833 - LTR16A1 LTR ERVL 0 457 274 256 308 103 17 chr6 155768877 155768994 -26646248 + MIR SINE MIR 103 229 -33 1431 174 118 50 chr6 155769013 155769376 -26645866 + MLT1B LTR MaLR 3 390 0 1112 216 12 49 chr6 155770713 155771041 -26644201 + MLT2C1 LTR ERVL 1 316 -81 321 253 0 33 chr6 155771042 155771133 -26644109 - L1MC4 LINE L1 -1339 6703 6616 845 252 112 14 chr6 155771212 155771815 -26643427 - LTR50 LTR ERVL -43 752 5 219 308 58 64 chr6 155772494 155772650 -26642592 + L2 LINE L2 2896 3050 -222 232 354 49 12 chr6 155772666 155772748 -26642494 - MER91C DNA MER1_type -31 109 25 676 92 28 0 chr6 155772789 155772898 -26642344 + (TCTA)n Simple_repeat Simple_repeat 1 112 0 1006 228 59 48 chr6 155772917 155773098 -26642144 - MLT1B LTR MaLR -29 361 184 183 42 0 0 chr6 155773098 155773122 -26642120 + (GA)n Simple_repeat Simple_repeat 1 24 0 1006 228 59 48 chr6 155773122 155773296 -26641946 - MLT1B LTR MaLR -206 184 2 234 81 0 0 chr6 155773296 155773333 -26641909 + (TC)n Simple_repeat Simple_repeat 2 38 0 2209 244 38 24 chr6 155773343 155774517 -26640725 - L1M2 LINE L1 -4404 2703 1508 293 298 58 41 chr6 155774749 155774920 -26640322 - MLT1K LTR MaLR -19 569 396 2012 113 0 0 chr6 155775815 155776081 -26639161 + AluSx SINE Alu 33 298 -14 5911 111 10 17 chr6 155776677 155777939 -26637303 - L1PA15 LINE L1 -4 6161 4906 2334 132 3 40 chr6 155777939 155778317 -26636925 + THE1B LTR MaLR 1 364 0 5911 111 10 17 chr6 155778317 155778950 -26636292 - L1PA15 LINE L1 -1259 4906 4270 494 169 0 0 chr6 155778950 155779039 -26636203 + L1PA15 LINE L1 4171 4259 -1887 22 0 0 0 chr6 155779040 155779062 -26636180 + AT_rich Low_complexity Low_complexity 1 22 0 1780 188 13 7 chr6 155779283 155779592 -26635650 + AluJb SINE Alu 1 311 -1 32 0 0 0 chr6 155779827 155779859 -26635383 + AT_rich Low_complexity Low_complexity 1 32 0 438 183 29 67 chr6 155779902 155780006 -26635236 - AluJo SINE Alu -93 219 120 299 155 17 0 chr6 155780545 155780603 -26634639 - LTR9 LTR ERV1 -83 529 471 523 236 0 0 chr6 155781211 155781321 -26633921 - FLAM_A SINE Alu -5 137 28 809 238 12 0 chr6 155781329 155781489 -26633753 - FAM SINE Alu -12 163 2 860 199 133 65 chr6 155781783 155782150 -26633092 - MSTD LTR MaLR -2 394 3 866 184 128 20 chr6 155782217 155782467 -26632775 + LTR12 LTR ERV1 1 277 -437 288 234 0 0 chr6 155782467 155782544 -26632698 + LTR30 LTR ERV1 544 620 -102 662 152 0 0 chr6 155782544 155782649 -26632593 + LTR12 LTR ERV1 355 459 -255 480 303 117 11 chr6 155783868 155784056 -26631186 + MIR SINE MIR 13 220 -42 1552 284 125 15 chr6 155784385 155785276 -26629966 - L1MC4 LINE L1 -320 7722 6734 240 300 20 0 chr6 155785341 155785441 -26629801 - L1MC4 LINE L1 -1481 6561 6460 242 250 33 0 chr6 155785539 155785599 -26629643 + GA-rich Low_complexity Low_complexity 3 64 0 201 294 0 0 chr6 155786272 155786323 -26628919 + L2 LINE L2 3263 3313 0 21 0 0 0 chr6 155787177 155787198 -26628044 + AT_rich Low_complexity Low_complexity 1 21 0 224 273 0 0 chr6 155787729 155787784 -26627458 + CT-rich Low_complexity Low_complexity 2 56 0 647 224 6 43 chr6 155788980 155789141 -26626101 + MIR SINE MIR 61 215 -47 22 35 0 0 chr6 155789386 155789415 -26625827 + AT_rich Low_complexity Low_complexity 1 29 0 327 231 55 0 chr6 155790307 155790398 -26624844 + L1ME LINE L1 2232 2327 -3819 528 264 102 16 chr6 155790447 155790701 -26624541 + L1ME LINE L1 5254 5529 -637 305 259 0 25 chr6 155790871 155790952 -26624290 - L1MC4 LINE L1 -1350 6692 6614 1128 256 51 14 chr6 155791656 155792008 -26623234 - MLT1A1 LTR MaLR 0 365 1 225 0 0 0 chr6 155792327 155792352 -26622890 + (CA)n Simple_repeat Simple_repeat 2 26 0 329 100 0 17 chr6 155792559 155792619 -26622623 + (GA)n Simple_repeat Simple_repeat 2 60 0 387 0 0 0 chr6 155792704 155792747 -26622495 + (TG)n Simple_repeat Simple_repeat 1 43 0 1666 163 185 11 chr6 155793190 155793553 -26621689 + MSTA LTR MaLR 1 426 -2 1256 139 81 4 chr6 155793795 155794053 -26621189 - L1MC3 LINE L1 -1 7784 7507 746 251 18 6 chr6 155794146 155794309 -26620933 - MIR SINE MIR -64 198 34 1432 279 24 24 chr6 155794599 155795012 -26620230 - LTR47B LTR ERVL 0 443 31 326 325 65 0 chr6 155795156 155795279 -26619963 + MIR SINE MIR 88 218 -44 2106 129 7 0 chr6 155796104 155796399 -26618843 - AluSx SINE Alu -15 297 1 222 290 48 0 chr6 155797740 155797802 -26617440 - L2 LINE L2 -1 3271 3207 306 215 261 23 chr6 155797974 155798104 -26617138 - MIR SINE MIR -17 245 85 259 336 114 38 chr6 155798131 155798577 -26616665 + L2 LINE L2 2093 2572 -742 3356 84 5 0 chr6 155798699 155799129 -26616113 + LTR3 LTR ERVK 1 432 0 201 351 26 0 chr6 155799242 155799319 -26615923 + L2 LINE L2 2939 3017 -255 584 184 0 0 chr6 155799325 155799434 -26615808 + L1MB1 LINE L1 6006 6114 -75 1990 53 0 0 chr6 155799444 155799689 -26615553 - L1PA3 LINE L1 -1 6154 5910 7997 21 0 2 chr6 155799689 155800671 -26614571 + L1P LINE L1 4445 5425 -730 947 144 39 52 chr6 155800674 155800903 -26614339 + L1MA10 LINE L1 6103 6328 -6 327 307 47 16 chr6 155801031 155801158 -26614084 + L2 LINE L2 3177 3307 -6 753 209 28 0 chr6 155801221 155801398 -26613844 - MER53 DNA DNA -2 187 6 421 283 0 0 chr6 155801753 155801852 -26613390 - L3 LINE CR1 -150 1427 1329 317 342 43 0 chr6 155801857 155801974 -26613268 + L2 LINE L2 3187 3308 -5 403 319 14 7 chr6 155801988 155802129 -26613113 - L3 LINE CR1 -263 1314 1173 189 222 0 0 chr6 155802136 155802172 -26613070 + L2 LINE L2 3222 3257 -15 22 0 0 0 chr6 155802577 155802599 -26612643 + AT_rich Low_complexity Low_complexity 1 22 0 491 0 13 51 chr6 155802669 155802747 -26612495 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 184 309 0 86 chr6 155807281 155807362 -26607880 + MIR SINE MIR 66 139 -123 927 157 6 12 chr6 155807580 155807746 -26607496 - L1PA15 LINE L1 -1 6164 6000 7111 68 8 0 chr6 155807955 155809673 -26605569 - L1PA6 LINE L1 0 6154 4426 1069 72 0 0 chr6 155809709 155809847 -26605395 - L1PA6 LINE L1 -2311 3835 3698 30493 102 6 10 chr6 155809850 155814294 -26600948 - L1P LINE L1 -1712 4434 11 265 342 107 40 chr6 155814408 155814633 -26600609 - L2 LINE L2 -188 3084 2845 1409 280 130 73 chr6 155815256 155815385 -26599857 - L2 LINE L2 -9 3304 3184 282 116 0 0 chr6 155815385 155815428 -26599814 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1409 280 130 73 chr6 155815428 155816523 -26598719 - L2 LINE L2 -129 3184 1988 204 67 0 0 chr6 155817686 155817716 -26597526 + (CA)n Simple_repeat Simple_repeat 2 31 0 213 329 41 71 chr6 155817723 155817893 -26597349 + L2 LINE L2 2895 3059 -213 12297 33 0 0 chr6 155818259 155820499 -26594743 - L1PA5 LINE L1 0 6154 3916 6681 20 0 1 chr6 155820499 155821659 -26593583 + L1HS LINE L1 4861 6020 -135 300 27 0 0 chr6 155821723 155821760 -26593482 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2383 104 0 0 chr6 155821890 155822199 -26593043 + AluSc SINE Alu 1 309 0 486 289 77 29 chr6 155822647 155822855 -26592387 + L2 LINE L2 3093 3310 -3 1121 172 0 48 chr6 155823058 155823285 -26591957 + MER20 DNA MER1_type 4 219 0 375 365 98 11 chr6 155823491 155823850 -26591392 + MLT1J2 LTR MaLR 32 421 -29 3245 109 17 2 chr6 155824086 155824554 -26590688 + LOR1a LTR ERV1 1 475 -22 516 329 123 5 chr6 155824971 155825190 -26590052 + MIR SINE MIR 4 248 -14 1171 118 6 0 chr6 155825278 155825439 -26589803 - AluSc SINE Alu -13 296 135 1420 167 20 0 chr6 155826569 155826820 -26588422 + L1MB1 LINE L1 5817 6072 -117 23 0 0 0 chr6 155826857 155826880 -26588362 + AT_rich Low_complexity Low_complexity 1 23 0 368 295 36 67 chr6 155826884 155827108 -26588134 + HAL1 LINE L1 4 220 -2287 2421 115 20 0 chr6 155827148 155827497 -26587745 - THE1B LTR MaLR -8 356 1 973 259 102 68 chr6 155827719 155828325 -26586917 + HAL1 LINE L1 482 1108 -1399 1440 294 110 14 chr6 155828795 155829461 -26585781 + HAL1 LINE L1 1188 1917 -590 429 236 41 0 chr6 155829660 155829766 -26585476 + MLT2D LTR ERVL 1 111 -303 1024 208 89 22 chr6 155829766 155830098 -26585144 - MSTD LTR MaLR 0 396 1 * 1243 173 38 87 chr6 155830098 155830398 -26584844 + MLT2D LTR ERVL 107 483 -37 342 0 0 0 chr6 155830398 155830436 -26584806 + (CA)n Simple_repeat Simple_repeat 2 39 0 1243 173 38 87 chr6 155830436 155830473 -26584769 + MLT2D LTR ERVL 483 520 0 385 264 67 54 chr6 155830476 155830749 -26584493 - L1MC/D LINE L1 -738 5553 5338 1724 272 108 33 chr6 155830771 155831816 -26583426 - L1ME3A LINE L1 -8 6162 5039 839 171 11 45 chr6 155831836 155832012 -26583230 + MER3 DNA MER1_type 20 189 -20 972 247 52 0 chr6 155832065 155832373 -26582869 + L1M3 LINE L1 2781 3104 -3042 5316 243 48 45 chr6 155832377 155834421 -26580821 + L1M3 LINE L1 3390 5436 -783 * 7553 210 57 14 chr6 155834418 155836192 -26579050 + L1MC3 LINE L1 5928 7777 -8 379 256 120 0 chr6 155836200 155836333 -26578909 + L1M4 LINE L1 4037 4185 -1961 23 0 0 0 chr6 155836423 155836446 -26578796 + AT_rich Low_complexity Low_complexity 1 23 0 806 314 43 2 chr6 155836486 155836909 -26578333 + L1M4 LINE L1 4480 4919 -1227 294 305 71 46 chr6 155837052 155837249 -26577993 + L2 LINE L2 3108 3309 -4 240 261 155 63 chr6 155837706 155837848 -26577394 + MER5A DNA MER1_type 35 189 0 2039 146 57 29 chr6 155837868 155838408 -26576834 - MLT2A2 LTR ERVL 0 554 1 504 209 44 0 chr6 155838419 155838510 -26576732 + MER5A DNA MER1_type 12 106 -83 1922 153 65 0 chr6 155838559 155838912 -26576330 - L1MB1 LINE L1 -4 6164 5789 1680 177 3 7 chr6 155838934 155839239 -26576003 + L1M3 LINE L1 5484 5787 -381 435 174 311 0 chr6 155839294 155839426 -26575816 + MER5A DNA MER1_type 16 188 -1 472 142 53 80 chr6 155840238 155840351 -26574891 - L1MA9 LINE L1 -44 6268 6159 1033 154 22 11 chr6 155840361 155840543 -26574699 - AluJb SINE Alu 0 312 129 2258 161 63 74 chr6 155840549 155840742 -26574500 - L1MA9 LINE L1 -159 6153 5959 252 0 0 0 chr6 155840742 155840770 -26574472 + (TG)n Simple_repeat Simple_repeat 2 29 0 2258 161 63 74 chr6 155840770 155841117 -26574125 - L1MA9 LINE L1 -353 5959 5619 1443 172 48 39 chr6 155841115 155841654 -26573588 + L1MA9 LINE L1 5070 5616 -696 * 325 269 140 101 chr6 155841813 155842468 -26572774 - L1M2 LINE L1 -5442 1407 548 276 340 40 10 chr6 155842962 155843062 -26572180 - MIR SINE MIR -82 126 24 22 0 0 0 chr6 155843243 155843265 -26571977 + GC_rich Low_complexity Low_complexity 1 22 0 1799 145 20 10 chr6 155843435 155843557 -26571685 + AluJo SINE Alu 1 120 -192 276 30 0 0 chr6 155843557 155843590 -26571652 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1799 145 20 10 chr6 155843590 155843763 -26571479 + AluJo SINE Alu 120 299 -13 260 219 161 52 chr6 155843825 155843980 -26571262 - MIR3 SINE MIR -14 194 23 198 0 0 0 chr6 155845258 155845280 -26569962 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr6 155846421 155846443 -26568799 + AT_rich Low_complexity Low_complexity 1 22 0 252 343 95 0 chr6 155847076 155847181 -26568061 + MIR SINE MIR 34 148 -60 1861 143 3 30 chr6 155848844 155849145 -26566097 + AluJb SINE Alu 3 295 -17 200 214 0 0 chr6 155849374 155849416 -26565826 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1029 188 0 0 chr6 155849813 155849983 -26565259 - AluJb SINE Alu -125 187 18 1321 219 127 55 chr6 155850906 155851541 -26563701 + L1MC4a LINE L1 6203 6790 -1019 528 63 0 13 chr6 155851541 155851620 -26563622 - L1PA2 LINE L1 0 6155 6078 1321 219 127 55 chr6 155851620 155852310 -26562932 + L1MC4a LINE L1 6790 7807 -2 811 233 0 0 chr6 155853562 155853733 -26561509 + FRAM SINE Alu 1 171 0 365 0 22 0 chr6 155854423 155854468 -26560774 + (TTA)n Simple_repeat Simple_repeat 3 48 0 10664 27 0 1 chr6 155854468 155856461 -26558781 - L1PA3 LINE L1 -18 6137 4122 685 162 0 0 chr6 155856620 155856737 -26558505 + FLAM_C SINE Alu 26 142 -1 619 229 13 6 chr6 155857788 155858097 -26557145 + (TA)n Simple_repeat Simple_repeat 1 311 0 236 281 71 61 chr6 155858172 155858280 -26556962 + MER5A DNA MER1_type 21 144 -45 618 75 0 0 chr6 155858441 155858521 -26556721 + AluY SINE Alu 214 293 -18 407 266 136 40 chr6 155858614 155858915 -26556327 + L1MC/D LINE L1 4904 5233 -913 2299 184 63 6 chr6 155859238 155859716 -26555526 - MER67C LTR ERV1 -3 707 203 923 50 8 0 chr6 155859764 155859883 -26555359 - L1PA4 LINE L1 -3 6152 6033 7416 40 7 0 chr6 155859910 155860824 -26554418 + L1P LINE L1 1357 2276 -3870 619 138 64 128 chr6 155860824 155861012 -26554230 - MER67C LTR ERV1 -533 177 2 292 237 7 89 chr6 155861055 155861190 -26554052 + L1MC/D LINE L1 5689 5812 -1996 28 0 0 0 chr6 155861995 155862023 -26553219 + AT_rich Low_complexity Low_complexity 1 28 0 2044 100 0 42 chr6 155862810 155863121 -26552121 + AluSc SINE Alu 1 298 -11 2173 133 141 3 chr6 155864045 155864421 -26550821 - MSTC LTR MaLR 0 428 1 945 195 76 0 chr6 155864471 155864722 -26550520 + L1 LINE L1 3166 3435 -2711 585 101 20 61 chr6 155864789 155864833 -26550409 + MLT1C LTR MaLR 1 45 -422 1811 165 62 28 chr6 155864833 155865185 -26550057 + THE1B LTR MaLR 1 364 0 585 101 20 61 chr6 155865185 155865239 -26550003 + MLT1C LTR MaLR 45 95 -372 648 37 0 0 chr6 155865239 155865320 -26549922 - L1PA5 LINE L1 -676 5479 5399 5511 46 1 0 chr6 155865320 155865992 -26549250 + L1PA5 LINE L1 5481 6154 0 1205 221 126 17 chr6 155866033 155866382 -26548860 + MLT1C LTR MaLR 81 467 0 878 211 107 107 chr6 155866519 155866709 -26548533 + MSTD LTR MaLR 1 190 -242 405 0 0 0 chr6 155866709 155866754 -26548488 + (CA)n Simple_repeat Simple_repeat 1 45 0 878 211 107 107 chr6 155866754 155866797 -26548445 + MSTD LTR MaLR 190 232 -200 308 24 24 0 chr6 155866797 155866838 -26548404 + (TC)n Simple_repeat Simple_repeat 1 42 0 * 360 0 0 0 chr6 155866837 155866877 -26548365 + (CA)n Simple_repeat Simple_repeat 1 40 0 878 211 107 107 chr6 155866838 155867110 -26548132 + MSTD LTR MaLR 232 432 0 3248 64 7 7 chr6 155867177 155867613 -26547629 + L1PA7 LINE L1 5719 6154 0 1495 169 77 18 chr6 155867617 155867954 -26547288 + L1 LINE L1 4465 4821 -1325 1367 328 52 33 chr6 155867957 155868598 -26546644 + L1MA6 LINE L1 5 657 -6132 10014 226 38 36 chr6 155868701 155871640 -26543602 + L1MA6 LINE L1 1047 3981 -2807 663 0 35 0 chr6 155871640 155871727 -26543515 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 10014 226 38 36 chr6 155871727 155872995 -26542247 + L1MA6 LINE L1 3981 4954 -1834 846 153 0 0 chr6 155872995 155873119 -26542123 + FLAM_C SINE Alu 1 124 -19 10014 226 38 36 chr6 155873119 155873892 -26541350 + L1MA6 LINE L1 4954 5725 -1063 1706 188 0 10 chr6 155873896 155874200 -26541042 - AluJb SINE Alu -11 301 1 2342 152 7 9 chr6 155874220 155874655 -26540587 - L1 LINE L1 -1316 4830 4397 4608 169 79 9 chr6 155874658 155875773 -26539469 + L1MA6 LINE L1 5754 6941 -1 1549 210 18 0 chr6 155875792 155876126 -26539116 + L1 LINE L1 4820 5159 -987 2120 35 0 4 chr6 155876865 155877126 -26538116 - L1PA4 LINE L1 -3 6152 5893 1384 18 0 6 chr6 155877126 155877293 -26537949 + L1PA4 LINE L1 5733 5898 -257 6724 55 5 0 chr6 155878040 155878975 -26536267 - L1PA7 LINE L1 -3 6151 5189 2153 129 0 11 chr6 155878975 155879346 -26535896 + L1P LINE L1 3017 3383 -2763 1404 208 51 40 chr6 155881032 155881402 -26533840 - MLT1A2 LTR MaLR 0 374 1 687 265 172 40 chr6 155881402 155881878 -26533364 + MLT1H1 LTR MaLR 15 553 -2 815 242 0 0 chr6 155882042 155882199 -26533043 + MER8 DNA MER2_type 83 239 0 216 267 44 56 chr6 155882620 155882710 -26532532 + MIR SINE MIR 37 125 -83 3588 178 16 54 chr6 155883050 155883189 -26532053 + MER49 LTR ERV1 178 321 -602 2100 122 3 3 chr6 155883189 155883485 -26531757 + AluSg SINE Alu 1 296 -14 3588 178 16 54 chr6 155883485 155884121 -26531121 + MER49 LTR ERV1 321 923 0 414 315 59 5 chr6 155884154 155884357 -26530885 + L2 LINE L2 898 1111 -2203 2586 176 31 29 chr6 155884377 155884887 -26530355 + MLT2B2 LTR ERVL 5 515 0 1336 198 169 6 chr6 155884890 155885244 -26529998 - L1ME2 LINE L1 -256 5908 5497 399 257 36 21 chr6 155885534 155885674 -26529568 - MLT1H LTR MaLR -396 153 12 1363 266 124 11 chr6 155885822 155886274 -26528968 - MLT2E LTR ERVL 0 628 126 264 288 65 65 chr6 155886275 155886414 -26528828 + L2 LINE L2 2932 3070 -243 322 265 61 61 chr6 155886462 155886594 -26528648 - MER94 DNA DNA -2 132 1 395 225 150 43 chr6 155886595 155886782 -26528460 + L2 LINE L2 3102 3308 -5 262 228 18 0 chr6 155886797 155886854 -26528388 + MIR SINE MIR 77 134 -74 26 0 0 0 chr6 155887167 155887193 -26528049 + AT_rich Low_complexity Low_complexity 1 26 0 2383 279 56 42 chr6 155887224 155888320 -26526922 + L2 LINE L2 2220 3313 0 912 187 12 0 chr6 155888898 155889064 -26526178 - FRAM SINE Alu -9 167 1 205 375 0 0 chr6 155889073 155889129 -26526113 - MIR SINE MIR -66 142 87 324 205 305 30 chr6 155889201 155889503 -26525739 + L1ME4a LINE L1 5733 6117 -4 372 318 54 7 chr6 155890018 155890166 -26525076 - MIR SINE MIR -75 187 33 479 219 92 6 chr6 155890736 155890900 -26524342 + L1MEc LINE L1 768 945 -5451 405 319 36 18 chr6 155890919 155891085 -26524157 - HERV16 LTR ERVL -4706 290 122 2876 256 71 63 chr6 155891114 155891518 -26523724 - L1MEc LINE L1 -4930 1466 1067 257 0 30 0 chr6 155891518 155891551 -26523691 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1971 114 0 24 chr6 155891553 155891843 -26523399 - AluSq SINE Alu -30 283 1 2876 256 71 63 chr6 155891843 155892856 -26522386 - L1MEc LINE L1 -5329 1067 34 695 260 88 20 chr6 155892908 155893112 -26522130 - LTR16A LTR ERVL 0 450 233 432 305 55 12 chr6 155893619 155893783 -26521459 + MIR SINE MIR 5 175 -87 715 256 135 0 chr6 155893804 155894034 -26521208 + MIR SINE MIR 2 262 0 237 300 175 0 chr6 155894844 155894964 -26520278 + MIR SINE MIR 21 161 -101 219 318 148 0 chr6 155895005 155895093 -26520149 - MIR SINE MIR -108 154 54 186 268 0 0 chr6 155895128 155895169 -26520073 + MIR SINE MIR 222 262 0 254 336 15 61 chr6 155895579 155895710 -26519532 + MIR3 SINE MIR 55 179 -29 245 228 29 154 chr6 155896599 155896735 -26518507 - MIR SINE MIR -72 190 72 220 273 169 39 chr6 155897022 155897176 -26518066 + L3 LINE CR1 1159 1332 -245 35 78 0 0 chr6 155898623 155898700 -26516542 + AT_rich Low_complexity Low_complexity 1 77 0 948 270 56 81 chr6 155898829 155899039 -26516203 + L2 LINE L2 2881 3095 -218 195 42 0 0 chr6 155899039 155899063 -26516179 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 948 270 56 81 chr6 155899063 155899296 -26515946 + L2 LINE L2 3095 3313 0 360 0 0 0 chr6 155899362 155899402 -26515840 + (CA)n Simple_repeat Simple_repeat 1 40 0 183 360 56 0 chr6 155900593 155900682 -26514560 + MIR SINE MIR 54 147 -61 1329 232 57 44 chr6 155900952 155901092 -26514150 - MLT1A2 LTR MaLR 0 374 237 1593 167 130 3 chr6 155901092 155901391 -26513851 + MER1B DNA MER1_type 1 337 0 1329 232 57 44 chr6 155901391 155901616 -26513626 - MLT1A2 LTR MaLR -137 237 4 25 0 0 0 chr6 155903950 155903975 -26511267 + AT_rich Low_complexity Low_complexity 1 25 0 14071 208 27 38 chr6 155904264 155909251 -26505991 - L1P4 LINE L1 -414 6402 1318 2453 279 50 59 chr6 155909303 155910219 -26505023 - L1P4 LINE L1 -5879 908 1 231 146 0 0 chr6 155911193 155911234 -26504008 + (GA)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chr6 155911708 155911733 -26503509 + AT_rich Low_complexity Low_complexity 1 25 0 36 36 0 60 chr6 155912278 155912362 -26502880 + AT_rich Low_complexity Low_complexity 1 79 0 444 118 0 0 chr6 155912612 155912680 -26502562 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 645 269 24 38 chr6 155912685 155912975 -26502267 - L1ME1 LINE L1 -4 6231 5946 8612 188 88 79 chr6 155912997 155913108 -26502134 - L1MA4 LINE L1 -1 7718 7610 2459 157 12 35 chr6 155913108 155913339 -26501903 - MSTB LTR MaLR -4 422 204 2317 51 3 24 chr6 155913339 155913632 -26501610 - AluY SINE Alu -19 292 6 2459 157 12 35 chr6 155913632 155913832 -26501410 - MSTB LTR MaLR -222 204 1 8612 188 88 79 chr6 155913832 155916278 -26498964 - L1MA4 LINE L1 -109 7610 5189 1678 152 10 23 chr6 155916278 155916581 -26498661 - Tigger2 DNA MER2_type 0 2718 2420 8612 188 88 79 chr6 155916581 155919386 -26495856 - L1MA4 LINE L1 -2530 5189 2097 527 340 120 39 chr6 155919709 155920174 -26495068 - L1MA4 LINE L1 -5778 1718 1216 1662 225 56 2 chr6 155920196 155920605 -26494637 - L1ME1 LINE L1 -371 5864 5434 943 231 26 13 chr6 155920607 155920841 -26494401 - MLT1E2 LTR MaLR -1 625 389 4418 260 90 47 chr6 155921049 155923900 -26491342 - L1ME1 LINE L1 -884 5331 2602 1735 197 136 0 chr6 155923900 155924275 -26490967 + MSTB LTR MaLR 1 426 0 4418 260 90 47 chr6 155924275 155925561 -26489681 - L1ME1 LINE L1 -3613 2602 1372 284 65 306 16 chr6 155925561 155925623 -26489619 + MADE1 DNA Mariner 1 80 0 4418 260 90 47 chr6 155925623 155926474 -26488768 - L1ME1 LINE L1 -4843 1372 57 24 32 0 0 chr6 155926504 155926535 -26488707 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr6 155926650 155926687 -26488555 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 155926843 155926864 -26488378 + AT_rich Low_complexity Low_complexity 1 21 0 375 375 12 61 chr6 155927063 155927308 -26487934 + L2 LINE L2 2914 3146 -126 2176 129 7 0 chr6 155928386 155928696 -26486546 + AluSq SINE Alu 1 312 -1 543 237 144 93 chr6 155928708 155929005 -26486237 + AluJo SINE Alu 2 312 0 317 235 140 15 chr6 155929631 155929767 -26485475 - MLT1J2 LTR MaLR -22 428 276 400 248 120 76 chr6 155930048 155930298 -26484944 - L2 LINE L2 -33 3280 3020 343 262 44 117 chr6 155930305 155930471 -26484771 + L2 LINE L2 1906 2050 -1264 1917 191 37 53 chr6 155930471 155930984 -26484258 - MLT1D LTR MaLR 0 505 1 343 262 44 117 chr6 155930984 155931065 -26484177 + L2 LINE L2 2050 2135 -1179 1093 327 159 4 chr6 155931366 155932193 -26483049 + L2 LINE L2 2171 3126 -187 245 317 0 0 chr6 155932212 155932272 -26482970 + Tigger3(Golem) DNA MER2_type 1 60 -2969 2761 139 28 38 chr6 155932276 155932780 -26482462 + Tigger3(Golem) DNA MER2_type 2530 3028 -1 208 191 67 95 chr6 155932781 155932886 -26482356 + L2 LINE L2 3148 3249 -64 351 307 28 6 chr6 155933056 155933232 -26482010 + L1ME LINE L1 5557 5736 -385 207 133 0 0 chr6 155935037 155935082 -26480160 + (TG)n Simple_repeat Simple_repeat 1 45 0 2274 164 2 0 chr6 155936224 155936632 -26478610 + L1P LINE L1 3544 3952 -2194 1293 71 25 50 chr6 155936632 155936762 -26478480 - MER75B DNA T2_type -261 243 118 3642 30 0 0 chr6 155936762 155937196 -26478046 + L1PA4 LINE L1 5719 6152 -3 1293 71 25 50 chr6 155937196 155937263 -26477979 - MER75B DNA T2_type -386 118 51 431 174 0 14 chr6 155937698 155937767 -26477475 - MER75B DNA T2_type -174 69 2 2116 160 11 0 chr6 155937768 155938131 -26477111 + L1P LINE L1 3950 4316 -1830 606 105 0 137 chr6 155938131 155938255 -26476987 + U6 snRNA snRNA 1 107 0 11766 178 27 39 chr6 155938255 155941365 -26473877 + L1PA14 LINE L1 3048 6159 -2 321 259 68 69 chr6 155941360 155941537 -26473705 + L1MEc LINE L1 815 981 -5403 2386 182 47 82 chr6 155942088 155942725 -26472517 + L1MD1 LINE L1 5628 6242 0 24 0 0 0 chr6 155942797 155942821 -26472421 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr6 155943133 155943168 -26472074 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 155944397 155944425 -26470817 + AT_rich Low_complexity Low_complexity 1 28 0 277 178 0 55 chr6 155944545 155944618 -26470624 - MER72 LTR ERV1 -645 77 9 1429 202 7 18 chr6 155944637 155944919 -26470323 - LTR38-int LTR ERV1 -1024 7096 6818 376 82 0 0 chr6 155944966 155945015 -26470227 - LTR38-int LTR ERV1 -4286 3834 3786 252 216 45 57 chr6 155945150 155945238 -26470004 - LTR38-int LTR ERV1 -2154 4177 4091 1809 180 0 0 chr6 155945238 155945593 -26469649 + AluSx SINE Alu 1 355 0 9609 161 48 58 chr6 155945618 155946652 -26468590 - LTR38-int LTR ERV1 -7 1779 737 840 176 0 0 chr6 155946652 155946783 -26468459 - FLAM_C SINE Alu -2 131 1 2010 155 126 8 chr6 155946785 155947166 -26468076 - MSTA LTR MaLR 0 428 3 9609 161 48 58 chr6 155947166 155947389 -26467853 - LTR38-int LTR ERV1 -1050 736 512 6010 163 56 35 chr6 155947389 155947908 -26467334 - LTR57-int LTR ERVL -3751 1592 1086 1589 203 6 19 chr6 155947908 155948223 -26467019 - AluJb SINE Alu -1 311 1 6010 163 56 35 chr6 155948223 155948951 -26466291 - LTR57-int LTR ERVL -4257 1086 318 9609 161 48 58 chr6 155948951 155949778 -26465464 - LTR38-int LTR ERV1 -1274 512 1 2706 185 21 25 chr6 155949779 155950336 -26464906 - LTR38 LTR ERV1 -1 555 1 22 0 0 0 chr6 155951039 155951061 -26464181 + AT_rich Low_complexity Low_complexity 1 22 0 3525 121 8 9 chr6 155951326 155951854 -26463388 + MER1A DNA MER1_type 1 527 0 2041 65 4 7 chr6 155951915 155952192 -26463050 + L1PA13 LINE L1 5888 6163 0 1047 16 79 0 chr6 155952365 155952491 -26462751 - MER85 DNA T2_type -2 137 2 23 54 0 0 chr6 155952749 155952786 -26462456 + AT_rich Low_complexity Low_complexity 1 37 0 1513 183 11 7 chr6 155952797 155953081 -26462161 - AluJb SINE Alu -27 285 1 1635 156 36 102 chr6 155953081 155953524 -26461718 - L1MA9 LINE L1 -34 6278 5865 314 313 109 35 chr6 155954407 155954637 -26460605 - MIR SINE MIR -14 248 2 1796 138 20 20 chr6 155955469 155955774 -26459468 + AluSq SINE Alu 3 307 -6 204 40 0 0 chr6 155955780 155955805 -26459437 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 282 252 38 88 chr6 155958508 155958667 -26456575 + MER5A DNA MER1_type 39 189 0 279 296 79 56 chr6 155958814 155959257 -26455985 - L1ME4a LINE L1 -78 6043 5569 * 2765 226 78 96 chr6 155959253 155959637 -26455605 - L1MDb LINE L1 -3958 2448 2059 2031 139 13 3 chr6 155959637 155959946 -26455296 - AluJo SINE Alu 0 312 1 2765 226 78 96 chr6 155959946 155961311 -26453931 - L1MDb LINE L1 -4347 2059 757 286 186 68 0 chr6 155961342 155961460 -26453782 + (TA)n Simple_repeat Simple_repeat 1 126 0 321 128 43 8 chr6 155961501 155961618 -26453624 + (TA)n Simple_repeat Simple_repeat 2 122 0 21 36 0 0 chr6 155961630 155961658 -26453584 + AT_rich Low_complexity Low_complexity 1 28 0 257 119 0 0 chr6 155961850 155961892 -26453350 - L1MB3 LINE L1 -267 5916 5875 22 0 0 0 chr6 155962599 155962621 -26452621 + AT_rich Low_complexity Low_complexity 1 22 0 503 264 61 12 chr6 155964857 155965020 -26450222 + MLT1J1 LTR MaLR 1 171 -275 306 289 78 24 chr6 155965080 155965246 -26449996 + MLT1J2 LTR MaLR 264 438 -12 297 331 8 16 chr6 155965748 155965869 -26449373 - MLT1J2 LTR MaLR -239 211 92 2033 177 83 2 chr6 155965891 155966286 -26448956 + MSTA LTR MaLR 2 428 0 514 276 118 6 chr6 155966690 155966860 -26448382 + MIR SINE MIR 71 259 -3 1680 197 89 6 chr6 155967695 155968056 -26447186 + MSTD LTR MaLR 6 396 0 241 238 0 16 chr6 155968796 155968859 -26446383 + MLT2B2 LTR ERVL 22 83 -432 281 303 11 0 chr6 155969089 155969178 -26446064 - L3b LINE CR1 -167 1416 1327 213 306 0 0 chr6 155972654 155972703 -26442539 - MIR3 SINE MIR -49 159 111 645 56 0 0 chr6 155973180 155973270 -26441972 + (TA)n Simple_repeat Simple_repeat 2 91 0 1182 56 0 0 chr6 155973270 155973413 -26441829 - AluY SINE Alu -6 305 163 327 128 26 13 chr6 155973643 155973721 -26441521 + CT-rich Low_complexity Low_complexity 2 80 0 1173 199 36 112 chr6 155974877 155975298 -26439944 + MLT1B LTR MaLR 1 389 -1 388 145 0 0 chr6 155975299 155975361 -26439881 + MLT1B-int LTR MaLR 1 62 -1309 2717 184 43 7 chr6 155975361 155975926 -26439316 - MLT1A1-int LTR MaLR -729 642 9 406 138 15 0 chr6 155975935 155976000 -26439242 - MLT1A1 LTR MaLR 0 365 300 2242 146 17 25 chr6 155976690 155977175 -26438067 - MER34B LTR ERV1 -30 535 1 218 236 157 11 chr6 155977429 155977518 -26437724 - MIR SINE MIR -70 192 91 197 351 43 11 chr6 155978651 155978745 -26436497 + MIR SINE MIR 29 125 -137 2003 327 83 41 chr6 155978904 155980406 -26434836 + L2 LINE L2 1734 3313 0 347 334 197 23 chr6 155980664 155981452 -26433790 - L2 LINE L2 -452 2862 1938 2475 188 26 61 chr6 155982328 155982506 -26432736 - MER41D LTR ERV1 0 557 374 2281 115 0 0 chr6 155982506 155982819 -26432423 - AluSq SINE Alu 0 313 1 2475 188 26 61 chr6 155982819 155983215 -26432027 - MER41D LTR ERV1 -183 374 3 684 305 158 27 chr6 155983528 155984121 -26431121 - L2 LINE L2 -943 2371 1701 328 254 27 18 chr6 155984520 155984630 -26430612 + MLT1K LTR MaLR 477 587 -1 21 0 0 0 chr6 155984720 155984741 -26430501 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 155985206 155985245 -26429997 + AT_rich Low_complexity Low_complexity 1 39 0 428 165 0 0 chr6 155985327 155985412 -26429830 - Charlie5 DNA MER1_type -2497 115 31 25 31 0 0 chr6 155985509 155985541 -26429701 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr6 155985682 155985714 -26429528 + AT_rich Low_complexity Low_complexity 1 32 0 2194 107 3 0 chr6 155985808 155986106 -26429136 - AluSx SINE Alu -13 299 1 266 204 0 0 chr6 155987021 155987070 -26428172 + MLT1E LTR MaLR 545 593 0 259 248 10 59 chr6 155987071 155987172 -26428070 + L1MA10 LINE L1 6238 6333 -1 373 318 79 27 chr6 155987192 155987598 -26427644 + L1M4c LINE L1 1033 1459 -4925 * 542 294 13 68 chr6 155987597 155987992 -26427250 + L1ME3A LINE L1 5789 6161 -9 180 0 0 0 chr6 155988475 155988495 -26426747 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 583 183 8 50 chr6 155988497 155988617 -26426625 - FLAM_A SINE Alu -18 115 1 373 143 0 0 chr6 155988663 155988719 -26426523 - MLT1A1 LTR MaLR -300 65 10 2612 185 17 76 chr6 155988802 155989402 -26425840 - MLT2B3 LTR ERVL 0 532 1 537 246 30 50 chr6 155991597 155991796 -26423446 - Charlie4 DNA MER1_type -1669 292 98 22 0 0 0 chr6 155992069 155992091 -26423151 + AT_rich Low_complexity Low_complexity 1 22 0 503 68 135 0 chr6 155992113 155992187 -26423055 + MER85 DNA T2_type 1 84 -55 565 273 33 6 chr6 155992380 155992563 -26422679 - L1MC4a LINE L1 -1940 5868 5681 307 293 80 28 chr6 155992650 155992899 -26422343 - L1MC4a LINE L1 -2277 5531 5270 12776 192 56 41 chr6 155992978 155995660 -26419582 - L1MA8 LINE L1 -1 7250 4611 1414 172 55 52 chr6 155995660 155995951 -26419291 - AluJo SINE Alu -20 292 1 12776 192 56 41 chr6 155995951 155995981 -26419261 - L1MA8 LINE L1 -2640 4611 4583 2247 115 0 0 chr6 155995981 155996277 -26418965 - AluSc SINE Alu -2 307 12 12776 192 56 41 chr6 155996277 155999725 -26415517 - L1MA8 LINE L1 -2668 4583 6 21 82 0 0 chr6 155999846 155999895 -26415347 + AT_rich Low_complexity Low_complexity 1 49 0 324 295 53 11 chr6 155999895 156000085 -26415157 - L1M4 LINE L1 -1028 5118 4921 29 28 0 0 chr6 156000411 156000447 -26414795 + AT_rich Low_complexity Low_complexity 1 36 0 409 277 13 19 chr6 156000459 156000614 -26414628 - HAL1 LINE L1 -33 2474 2321 326 257 50 40 chr6 156000614 156000715 -26414527 + L2 LINE L2 3206 3307 -6 1779 251 136 56 chr6 156000720 156001478 -26413764 - HAL1 LINE L1 -191 2316 1620 1458 165 9 87 chr6 156001478 156001799 -26413443 + AluJo SINE Alu 1 296 -16 1779 251 136 56 chr6 156001799 156001904 -26413338 - HAL1 LINE L1 -887 1620 1525 2103 116 0 7 chr6 156001904 156002217 -26413025 - AluSx SINE Alu 0 311 1 218 32 32 0 chr6 156002222 156002253 -26412989 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1779 251 136 56 chr6 156002253 156002387 -26412855 - HAL1 LINE L1 -985 1522 1230 28 48 0 0 chr6 156002435 156002477 -26412765 + AT_rich Low_complexity Low_complexity 1 42 0 4230 183 38 26 chr6 156002480 156003610 -26411632 - L1MB2 LINE L1 -4 6167 5024 808 316 110 47 chr6 156003670 156004551 -26410691 - HAL1 LINE L1 -1429 1078 142 2211 87 42 0 chr6 156005518 156005804 -26409438 + AluSc SINE Alu 1 298 -11 2848 12 0 6 chr6 156006040 156006359 -26408883 + AluYb8 SINE Alu 1 317 -1 22 70 0 0 chr6 156006969 156007012 -26408230 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 156007435 156007460 -26407782 + AT_rich Low_complexity Low_complexity 1 25 0 1852 72 0 0 chr6 156007878 156008099 -26407143 + AluSg/x SINE Alu 84 304 -8 324 235 61 20 chr6 156008819 156008917 -26406325 - MIR SINE MIR -62 200 99 264 231 64 26 chr6 156008899 156008977 -26406265 + MIR SINE MIR 182 262 0 * 270 325 8 75 chr6 156009924 156010044 -26405198 + MIR SINE MIR 6 117 -145 1853 149 139 21 chr6 156010272 156010647 -26404595 - MSTA LTR MaLR -4 424 6 2271 102 0 0 chr6 156011291 156011586 -26403656 + AluSq SINE Alu 5 299 -14 1196 298 150 42 chr6 156011813 156012608 -26402634 + L2 LINE L2 668 1548 -1766 182 276 46 46 chr6 156012660 156012747 -26402495 + L2 LINE L2 3220 3306 -7 252 310 80 10 chr6 156012770 156012870 -26402372 + L2 LINE L2 3206 3312 -1 2122 122 0 3 chr6 156013185 156013479 -26401763 + AluSx SINE Alu 1 293 -19 340 244 118 17 chr6 156014230 156014349 -26400893 - MER103 DNA DNA -20 146 16 1997 147 67 0 chr6 156015027 156015340 -26399902 + MER1B DNA MER1_type 6 339 0 2090 120 0 10 chr6 156015955 156016254 -26398988 - AluSg SINE Alu -14 296 1 200 145 29 43 chr6 156016675 156016744 -26398498 + CT-rich Low_complexity Low_complexity 2 69 0 198 0 0 0 chr6 156017707 156017729 -26397513 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 560 348 60 24 chr6 156018546 156018879 -26396363 - LTR16C LTR ERVL -16 475 131 228 170 21 21 chr6 156019000 156019047 -26396195 - MER20 DNA MER1_type -3 216 170 675 164 15 55 chr6 156019047 156019170 -26396072 - L1 LINE L1 -2526 3620 3494 1387 188 16 49 chr6 156019170 156019474 -26395768 - AluJo SINE Alu -18 294 1 675 164 15 55 chr6 156019474 156019621 -26395621 - L1 LINE L1 -2652 3494 3308 511 207 90 0 chr6 156019621 156019732 -26395510 - MER20 DNA MER1_type -70 149 29 354 127 0 16 chr6 156019742 156019805 -26395437 + MER53 DNA DNA 4 65 -124 27 49 0 0 chr6 156019870 156019911 -26395331 + AT_rich Low_complexity Low_complexity 1 41 0 2656 179 62 65 chr6 156019945 156020477 -26394765 - MER67C LTR ERV1 -2 708 177 1612 101 0 0 chr6 156020477 156020684 -26394558 + AluSq SINE Alu 90 296 -17 2656 179 62 65 chr6 156020684 156020861 -26394381 - MER67C LTR ERV1 -533 177 1 468 313 102 67 chr6 156021123 156021724 -26393518 - ERVL LTR ERVL -403 5361 4740 394 359 51 8 chr6 156021919 156022153 -26393089 - ERVL LTR ERVL -1024 4461 4218 422 215 111 23 chr6 156022356 156022528 -26392714 + HsTC2 DNA Tc2 1709 1895 -3 321 246 14 0 chr6 156023931 156024000 -26391242 + L2 LINE L2 3244 3313 0 1725 156 0 21 chr6 156024386 156024668 -26390574 + AluJb SINE Alu 28 303 -9 1820 173 35 64 chr6 156024949 156025353 -26389889 - MSTD LTR MaLR 0 396 5 587 287 14 37 chr6 156025519 156025735 -26389507 - L2 LINE L2 -5 3308 3098 319 344 77 16 chr6 156026038 156026221 -26389021 + MIR3 SINE MIR 14 207 -1 479 300 165 1 chr6 156026961 156027270 -26387972 + L1MDb LINE L1 1154 1547 -5040 426 286 85 35 chr6 156027764 156027963 -26387279 + MIR SINE MIR 15 223 -39 2427 63 3 31 chr6 156028170 156028489 -26386753 - AluY SINE Alu -1 310 1 330 166 18 225 chr6 156029027 156029196 -26386046 + MER94 DNA DNA 1 134 0 213 175 25 0 chr6 156031947 156031987 -26383255 + (TA)n Simple_repeat Simple_repeat 1 41 0 1315 142 46 0 chr6 156032505 156032724 -26382518 - MER30 DNA MER1_type 0 230 2 2142 118 0 0 chr6 156033363 156033659 -26381583 + AluSq SINE Alu 1 296 -17 315 289 39 19 chr6 156033791 156033895 -26381347 - L3 LINE CR1 -467 1110 1005 425 388 78 4 chr6 156034076 156034347 -26380895 - L3 LINE CR1 -1089 488 198 27 49 0 0 chr6 156035871 156035912 -26379330 + AT_rich Low_complexity Low_complexity 1 41 0 216 284 173 0 chr6 156036841 156036922 -26378320 + L2 LINE L2 3208 3302 -11 243 146 0 0 chr6 156037475 156037516 -26377726 + (TA)n Simple_repeat Simple_repeat 1 41 0 1978 140 0 17 chr6 156037516 156037816 -26377426 - AluSx SINE Alu -17 295 1 27 81 0 0 chr6 156037817 156037879 -26377363 + AT_rich Low_complexity Low_complexity 1 62 0 278 309 32 24 chr6 156037904 156038030 -26377212 - L2 LINE L2 -613 2701 2575 2001 159 36 76 chr6 156038044 156038329 -26376913 - MLT1C LTR MaLR -14 453 193 1471 174 46 14 chr6 156038329 156038610 -26376632 - AluJo SINE Alu -20 292 3 2001 159 36 76 chr6 156038610 156038796 -26376446 - MLT1C LTR MaLR -274 193 1 289 291 141 41 chr6 156039186 156039366 -26375876 - L2 LINE L2 -1262 2052 1891 2053 119 164 11 chr6 156039366 156039554 -26375688 - MSTA LTR MaLR 0 428 270 180 0 0 0 chr6 156039554 156039574 -26375668 + (GA)n Simple_repeat Simple_repeat 1 20 0 2053 119 164 11 chr6 156039574 156039756 -26375486 - MSTA LTR MaLR -158 270 1 289 291 141 41 chr6 156039756 156039894 -26375348 - L2 LINE L2 -1423 1891 1702 1555 171 8 4 chr6 156040019 156040270 -26374972 + AluJo SINE Alu 12 263 -49 6026 91 10 4 chr6 156040703 156041538 -26373704 - L1PA10 LINE L1 -2 6166 5327 2739 145 2 2 chr6 156041772 156042200 -26373042 - MSTA LTR MaLR 0 428 1 22 70 0 0 chr6 156042700 156042743 -26372499 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr6 156042830 156042854 -26372388 + AT_rich Low_complexity Low_complexity 1 24 0 269 250 75 17 chr6 156042914 156043034 -26372208 - L1ME4a LINE L1 -6 6115 5989 295 267 152 14 chr6 156043306 156043523 -26371719 - L1M4 LINE L1 -2144 4002 3756 23 0 0 0 chr6 156043718 156043741 -26371501 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 156044025 156044047 -26371195 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 156044231 156044252 -26370990 + AT_rich Low_complexity Low_complexity 1 21 0 485 309 79 62 chr6 156044287 156044880 -26370362 - L1M4 LINE L1 -2869 3277 2675 21 57 0 0 chr6 156045118 156045153 -26370089 + AT_rich Low_complexity Low_complexity 1 35 0 1996 165 11 31 chr6 156045332 156045713 -26369529 + THE1C LTR MaLR 3 375 0 1918 120 40 0 chr6 156046783 156047057 -26368185 - AluSx SINE Alu -18 294 10 339 333 52 7 chr6 156047220 156047373 -26367869 - L1M4 LINE L1 -2258 3888 3729 21 0 0 0 chr6 156047410 156047431 -26367811 + AT_rich Low_complexity Low_complexity 1 21 0 74 32 0 0 chr6 156047708 156047803 -26367439 + AT_rich Low_complexity Low_complexity 1 95 0 288 248 71 61 chr6 156048707 156048905 -26366337 - L1M4 LINE L1 -1468 4678 4479 355 305 21 28 chr6 156049649 156049790 -26365452 - L1ME4a LINE L1 -2111 5697 5558 257 212 88 65 chr6 156049875 156050045 -26365197 - L1ME4a LINE L1 -754 5429 5256 2780 251 62 17 chr6 156050157 156051723 -26363519 - L1ME2 LINE L1 0 6233 4461 1028 261 72 59 chr6 156051767 156052226 -26363016 - MLT1C LTR MaLR -2 465 1 873 326 69 48 chr6 156052247 156053336 -26361906 - L1ME2 LINE L1 -5212 1184 73 966 290 93 80 chr6 156054632 156054834 -26360408 + L1ME LINE L1 2110 2308 -3838 2126 118 0 3 chr6 156054834 156055138 -26360104 - AluSg SINE Alu -7 303 1 966 290 93 80 chr6 156055138 156056186 -26359056 + L1ME LINE L1 2308 3341 -2805 1903 132 0 14 chr6 156056186 156056467 -26358775 + AluSx SINE Alu 7 283 -29 456 19 0 0 chr6 156056470 156056523 -26358719 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 966 290 93 80 chr6 156056523 156057427 -26357815 + L1ME LINE L1 3342 4319 -1827 575 278 73 28 chr6 156057427 156057515 -26357727 - MIR SINE MIR -2 260 177 1552 152 30 23 chr6 156057515 156057779 -26357463 - AluSx SINE Alu -11 301 36 575 278 73 28 chr6 156057779 156057938 -26357304 - MIR SINE MIR -85 177 2 966 290 93 80 chr6 156057938 156058687 -26356555 + L1ME LINE L1 4319 5057 -1089 424 283 27 22 chr6 156058708 156058892 -26356350 + L1ME LINE L1 5348 5532 -630 25 0 0 0 chr6 156059220 156059245 -26355997 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr6 156059808 156059829 -26355413 + AT_rich Low_complexity Low_complexity 1 21 0 289 323 65 43 chr6 156059995 156060181 -26355061 + L2 LINE L2 3124 3313 0 218 218 218 35 chr6 156060537 156060624 -26354618 + L2 LINE L2 3170 3272 0 384 303 25 0 chr6 156060663 156060782 -26354460 + MER117 DNA MER1_type 50 171 -26 211 28 56 0 chr6 156062444 156062480 -26352762 + (TA)n Simple_repeat Simple_repeat 2 39 0 291 202 40 16 chr6 156062630 156062754 -26352488 + (TA)n Simple_repeat Simple_repeat 2 128 0 544 307 61 22 chr6 156063561 156063792 -26351450 - MIR SINE MIR -17 245 6 810 226 17 28 chr6 156063895 156064076 -26351166 - MIR SINE MIR -50 212 34 1402 164 0 4 chr6 156064892 156065117 -26350125 - AluSx SINE Alu -88 224 1 23 0 0 0 chr6 156065124 156065147 -26350095 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr6 156065837 156065882 -26349360 + AT_rich Low_complexity Low_complexity 1 45 0 304 311 128 39 chr6 156066815 156066995 -26348247 - MIR SINE MIR -30 232 37 44 0 0 0 chr6 156067381 156067425 -26347817 + AT_rich Low_complexity Low_complexity 1 44 0 1036 207 0 0 chr6 156067528 156067716 -26347526 + MER5A DNA MER1_type 1 188 -1 439 328 22 17 chr6 156067831 156068011 -26347231 + MER5A DNA MER1_type 1 181 -8 1447 233 52 37 chr6 156068876 156069258 -26345984 + L1M4 LINE L1 4 391 -6151 3182 242 52 40 chr6 156069309 156071089 -26344153 + L1M4 LINE L1 1422 3353 -3291 2442 49 0 49 chr6 156071089 156071413 -26343829 + AluY SINE Alu 1 308 -3 3182 242 52 40 chr6 156071413 156071718 -26343524 + L1M4 LINE L1 3353 3653 -2991 296 219 14 0 chr6 156071719 156071792 -26343450 + L1M4 LINE L1 4609 4682 -1962 295 260 30 30 chr6 156071793 156071893 -26343349 + L1MB7 LINE L1 6060 6159 -25 248 388 125 13 chr6 156072419 156072643 -26342599 - L2 LINE L2 -10 3262 3014 272 380 72 16 chr6 156072995 156073316 -26341926 - L2 LINE L2 -566 2748 2410 1534 212 65 65 chr6 156074057 156074600 -26340642 - L1ME2 LINE L1 -10 6154 5612 257 139 65 0 chr6 156076155 156076263 -26338979 + (TA)n Simple_repeat Simple_repeat 2 116 0 463 312 25 6 chr6 156076591 156076748 -26338494 - MIR SINE MIR -50 212 53 24 32 0 0 chr6 156076846 156076877 -26338365 + AT_rich Low_complexity Low_complexity 1 31 0 672 150 60 118 chr6 156076947 156077218 -26338024 - MER31B LTR ERV1 -77 389 32 638 251 59 0 chr6 156077233 156077436 -26337806 - L1ME3 LINE L1 -22 6140 5926 270 214 0 29 chr6 156077578 156077648 -26337594 - L1M4 LINE L1 -2884 3262 3195 209 305 109 39 chr6 156079831 156079959 -26335283 - MIR SINE MIR -108 154 18 5123 179 38 30 chr6 156080094 156081433 -26333809 - L1MA7 LINE L1 0 6291 4965 1481 191 4 0 chr6 156081433 156081679 -26333563 - AluJb SINE Alu -55 257 11 5123 179 38 30 chr6 156081679 156081813 -26333429 - L1MA7 LINE L1 -1326 4965 4834 1562 189 3 33 chr6 156081813 156082114 -26333128 - AluJb SINE Alu -20 292 1 5123 179 38 30 chr6 156082114 156082452 -26332790 - L1MA7 LINE L1 -1457 4834 4465 1149 165 117 156 chr6 156082882 156083405 -26331837 - LTR12 LTR ERV1 -234 480 1 7239 108 2 11 chr6 156083405 156084456 -26330786 - HERV9 LTR ERV1 0 8399 7359 32 67 0 0 chr6 156084491 156084551 -26330691 + AT_rich Low_complexity Low_complexity 1 60 0 310 303 120 13 chr6 156084908 156085142 -26330100 + L1M4 LINE L1 1015 1273 -5582 239 267 84 23 chr6 156085136 156085267 -26329975 + L1M4 LINE L1 1216 1354 -5505 * 2092 144 57 1 chr6 156085277 156085946 -26329296 + L1P4 LINE L1 5069 5799 -352 * 5196 148 18 28 chr6 156085943 156087560 -26327682 + L1PB1 LINE L1 4189 5791 -360 195 184 0 0 chr6 156087560 156087598 -26327644 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2238 128 11 8 chr6 156087600 156087996 -26327246 + L1PB1 LINE L1 5782 6178 0 223 258 0 52 chr6 156088013 156088110 -26327132 + GA-rich Low_complexity Low_complexity 1 92 0 338 230 19 87 chr6 156088116 156088277 -26326965 + L1M4 LINE L1 2369 2518 -4620 2270 238 56 26 chr6 156088427 156089385 -26325857 + L1M4 LINE L1 4759 5560 -1397 1491 117 9 0 chr6 156089385 156089598 -26325644 + AluSc SINE Alu 86 300 -9 368 158 0 12 chr6 156089598 156089680 -26325562 + GA-rich Low_complexity Low_complexity 1 81 0 2177 92 0 0 chr6 156089938 156090245 -26324997 - AluSg SINE Alu 0 307 1 300 150 50 0 chr6 156090365 156090425 -26324817 + L1MB7 LINE L1 5575 5637 -529 * 874 251 38 11 chr6 156090420 156090683 -26324559 + L1MB7 LINE L1 5915 6184 0 23 54 0 0 chr6 156091155 156091192 -26324050 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr6 156092200 156092234 -26323008 + AT_rich Low_complexity Low_complexity 1 34 0 270 298 53 30 chr6 156092365 156092496 -26322746 + HAL1 LINE L1 104 237 -2270 487 321 51 54 chr6 156094046 156094342 -26320900 + HAL1 LINE L1 258 552 -1955 911 275 84 48 chr6 156094510 156094881 -26320361 + L2 LINE L2 2292 2675 -639 278 167 30 30 chr6 156094900 156094966 -26320276 - MLT1I LTR MaLR 0 409 344 418 282 159 31 chr6 156094969 156095164 -26320078 - MER58A DNA MER1_type -1 223 4 673 278 85 35 chr6 156095164 156095423 -26319819 - MLT1I LTR MaLR -58 351 80 623 180 57 0 chr6 156095418 156095540 -26319702 + MLT1C LTR MaLR 337 465 -2 * 250 288 55 0 chr6 156095543 156095616 -26319626 - MLT1I LTR MaLR -332 77 1 524 297 112 61 chr6 156095623 156096145 -26319097 + L2 LINE L2 2699 3270 -43 382 294 221 10 chr6 156096864 156097068 -26318174 - L2 LINE L2 -1185 2129 1883 2202 107 0 0 chr6 156098130 156098429 -26316813 - AluSx SINE Alu -5 307 9 585 183 0 0 chr6 156098838 156098942 -26316300 - AluJb SINE Alu -20 292 189 1941 90 8 150 chr6 156098972 156099373 -26315869 - LTR14B LTR ERVK 0 608 1 1826 112 8 8 chr6 156099376 156099643 -26315599 - AluSq SINE Alu -46 267 1 825 150 0 36 chr6 156099643 156099783 -26315459 - AluJb SINE Alu -177 135 1 4382 170 24 9 chr6 156099810 156101020 -26314222 + L1MA9 LINE L1 4847 6081 -231 321 225 56 0 chr6 156101045 156101134 -26314108 + L1MA9 LINE L1 6194 6287 -25 24 67 0 0 chr6 156101134 156101179 -26314063 + AT_rich Low_complexity Low_complexity 1 45 0 323 222 14 1 chr6 156101449 156101544 -26313698 - L1MC/D LINE L1 -332 5830 5748 226 234 0 0 chr6 156101547 156101594 -26313648 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2251 101 0 13 chr6 156101804 156102111 -26313131 - AluSg SINE Alu -7 303 1 2641 167 47 112 chr6 156102420 156103164 -26312078 - LTR34 LTR ERV1 -1 698 3 308 301 54 36 chr6 156103642 156103808 -26311434 + L2 LINE L2 3145 3313 0 491 277 204 17 chr6 156104473 156104708 -26310534 - L2 LINE L2 -1185 2129 1851 719 145 8 0 chr6 156105764 156105881 -26309361 - AluSg/x SINE Alu -6 304 187 1977 87 8 152 chr6 156105916 156106318 -26308924 - LTR14B LTR ERVK 0 608 1 1776 132 8 4 chr6 156106321 156106587 -26308655 - AluSq SINE Alu -46 267 1 678 203 0 31 chr6 156106589 156106717 -26308525 - AluJb SINE Alu -188 124 1 4416 173 27 7 chr6 156106718 156107949 -26307293 + L1MA9 LINE L1 4824 6081 -231 312 208 0 0 chr6 156107991 156108068 -26307174 + L1MA8 LINE L1 6203 6279 -12 253 229 0 0 chr6 156108395 156108456 -26306786 - L1ME LINE L1 -335 5827 5767 263 226 0 16 chr6 156108470 156108532 -26306710 + (TA)n Simple_repeat Simple_repeat 2 62 0 2259 99 0 22 chr6 156108717 156109029 -26306213 - AluSg SINE Alu -5 305 1 2656 159 48 117 chr6 156109333 156110075 -26305167 - LTR34 LTR ERV1 -6 693 3 1114 219 55 39 chr6 156110502 156110812 -26304430 - LTR27 LTR ERV1 -1 635 321 1312 203 48 20 chr6 156111959 156112414 -26302828 + MLT1D LTR MaLR 2 505 0 2292 147 47 42 chr6 156112445 156112875 -26302367 - MSTB1 LTR MaLR 0 432 1 197 368 0 15 chr6 156112929 156112997 -26302245 - L2 LINE L2 -20 3293 3227 598 312 88 46 chr6 156113002 156113457 -26301785 - L2 LINE L2 0 3313 2840 856 288 55 0 chr6 156114865 156115101 -26300141 + MIR SINE MIR 2 250 -12 3643 167 90 83 chr6 156115288 156116360 -26298882 + Tigger6a DNA MER2_type 5 1083 0 11646 104 30 4 chr6 156116865 156118530 -26296712 + L1PA7 LINE L1 8 1715 -4746 17721 99 19 1 chr6 156118531 156121919 -26293323 + L1PA7 LINE L1 3028 6466 -3 22 0 0 0 chr6 156122295 156122317 -26292925 + AT_rich Low_complexity Low_complexity 1 22 0 326 279 139 24 chr6 156122971 156123136 -26292106 + L1MC/D LINE L1 5541 5724 -2084 1910 203 63 31 chr6 156123683 156124172 -26291070 + MLT1D LTR MaLR 1 505 0 2429 210 67 27 chr6 156125335 156125963 -26289279 - MER82 DNA MER2_type 0 653 1 243 0 0 0 chr6 156125967 156125994 -26289248 + (TG)n Simple_repeat Simple_repeat 2 28 0 2283 125 0 0 chr6 156126775 156127088 -26288154 - AluSq SINE Alu 0 313 1 1065 309 203 5 chr6 156127641 156128204 -26287038 + L3 LINE CR1 626 1299 -278 309 341 127 14 chr6 156129298 156129518 -26285724 + MIR SINE MIR 15 259 -3 308 309 40 16 chr6 156129523 156129649 -26285593 + MIR3 SINE MIR 57 185 -23 411 276 224 10 chr6 156130990 156131182 -26284060 + MIR SINE MIR 20 252 -10 291 278 56 33 chr6 156132098 156132124 -26283118 + MIR SINE MIR 31 55 -207 607 75 0 0 chr6 156132124 156132204 -26283038 - MADE1 DNA Mariner 0 80 1 291 278 56 33 chr6 156132204 156132267 -26282975 + MIR SINE MIR 55 122 -140 268 317 10 10 chr6 156132369 156132473 -26282769 + MIR SINE MIR 144 247 -15 200 303 194 52 chr6 156132660 156132815 -26282427 + MIR SINE MIR 20 196 -66 31 58 0 0 chr6 156132990 156133042 -26282200 + AT_rich Low_complexity Low_complexity 1 52 0 2419 177 24 0 chr6 156133976 156134400 -26280842 - MER57B LTR ERV1 0 434 1 1566 91 116 16 chr6 156134400 156134642 -26280600 - MER57B-int LTR ERV1 0 7537 7272 689 136 68 0 chr6 156134642 156134760 -26280482 - LTR54B LTR ERV1 -370 128 3 3348 136 6 2 chr6 156134760 156135262 -26279980 - MER57B-int LTR ERV1 -388 7149 6646 329 130 0 0 chr6 156135293 156135339 -26279903 - MER57B LTR ERV1 -388 46 1 189 344 0 21 chr6 156135676 156135769 -26279473 + L2 LINE L2 2711 2801 -513 541 239 94 47 chr6 156136078 156136312 -26278930 - L1M4 LINE L1 -2517 3629 3385 1609 285 80 30 chr6 156136360 156136621 -26278621 - L1ME LINE L1 -5255 1141 895 2324 112 0 0 chr6 156136621 156136925 -26278317 - AluSx SINE Alu -8 304 1 1609 285 80 30 chr6 156136925 156137725 -26277517 - L1ME LINE L1 -5501 895 57 611 291 183 49 chr6 156137979 156138781 -26276461 + L2 LINE L2 1880 2789 -525 196 30 61 0 chr6 156139298 156139331 -26275911 + (TA)n Simple_repeat Simple_repeat 1 35 0 4612 136 14 5 chr6 156139561 156140297 -26274945 - L1PB3 LINE L1 -8 6146 5405 24 32 0 0 chr6 156140590 156140621 -26274621 + AT_rich Low_complexity Low_complexity 1 31 0 287 340 79 23 chr6 156142280 156142409 -26272833 - MIR SINE MIR -68 140 22 1334 103 0 0 chr6 156143259 156143434 -26271808 + AluSg/x SINE Alu 137 311 -1 253 324 90 21 chr6 156143884 156144029 -26271213 + MIR SINE MIR 88 242 -20 215 217 67 33 chr6 156144918 156144978 -26270264 + MIR SINE MIR 92 153 -109 193 385 12 0 chr6 156147285 156147368 -26267874 + L2 LINE L2 3184 3267 -5 464 271 106 68 chr6 156147463 156147670 -26267572 - MIR SINE MIR -38 224 10 183 328 31 0 chr6 156149103 156149167 -26266075 + MIR SINE MIR 126 191 -71 411 313 45 15 chr6 156149450 156149584 -26265658 + MIR3 SINE MIR 21 158 -50 324 336 49 7 chr6 156151311 156151454 -26263788 - MIR3 SINE MIR -41 167 19 2252 113 0 3 chr6 156153380 156153673 -26261569 + AluSg SINE Alu 1 292 -18 306 0 0 0 chr6 156154466 156154500 -26260742 + (TA)n Simple_repeat Simple_repeat 1 34 0 493 323 65 13 chr6 156154524 156154756 -26260486 - MIR SINE MIR -17 245 2 342 0 0 0 chr6 156156407 156156445 -26258797 + (CA)n Simple_repeat Simple_repeat 2 39 0 261 336 76 0 chr6 156156929 156157048 -26258194 + MIR SINE MIR 19 146 -62 318 313 0 10 chr6 156158163 156158259 -26256983 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 926 307 61 25 chr6 156159195 156159215 -26256027 - L2 LINE L2 0 3313 3295 431 113 127 0 chr6 156159215 156159286 -26255956 + MADE1 DNA Mariner 1 80 0 926 307 61 25 chr6 156159286 156159672 -26255570 - L2 LINE L2 -18 3295 2892 2220 90 9 43 chr6 156160359 156160682 -26254560 + AluSx SINE Alu 1 312 0 2414 89 0 0 chr6 156160910 156161214 -26254028 - AluSq SINE Alu -9 304 1 277 264 57 38 chr6 156161701 156161807 -26253435 - MIR SINE MIR -115 147 40 430 341 52 65 chr6 156162503 156163055 -26252187 - L3 LINE CR1 -289 1288 744 269 268 92 35 chr6 156163055 156163197 -26252045 + L1MC5 LINE L1 7782 7931 -30 2229 114 3 13 chr6 156165241 156165549 -26249693 - AluSp SINE Alu -8 305 1 417 344 162 44 chr6 156165721 156166602 -26248640 + L2 LINE L2 213 1197 -2117 257 245 189 0 chr6 156167787 156167893 -26247349 - MIR SINE MIR -91 171 46 185 273 30 0 chr6 156167975 156168041 -26247201 + L2 LINE L2 2973 3040 -232 284 344 143 8 chr6 156168637 156168896 -26246346 + L2 LINE L2 2682 2975 -339 495 232 10 0 chr6 156169025 156169124 -26246118 - MER5A DNA MER1_type -71 118 19 794 205 25 12 chr6 156170171 156170332 -26244910 + MER5A DNA MER1_type 27 189 0 255 268 93 31 chr6 156170616 156170713 -26244529 - MIR3 SINE MIR -21 187 85 4381 106 11 9 chr6 156173342 156173976 -26241266 + MER41B LTR ERV1 1 635 0 299 333 27 36 chr6 156174113 156174224 -26241018 + MIR SINE MIR 41 150 -112 340 78 0 20 chr6 156175184 156175235 -26240007 + MER61A LTR ERV1 294 343 0 191 232 107 18 chr6 156176076 156176132 -26239110 + MIR SINE MIR 61 121 -87 1830 150 18 12 chr6 156176784 156177111 -26238131 - MER61A LTR ERV1 -14 329 1 219 303 67 0 chr6 156177150 156177239 -26238003 + MIR SINE MIR 44 138 -124 457 199 126 26 chr6 156177247 156177438 -26237804 + L1MC4 LINE L1 7188 7397 -645 235 297 115 19 chr6 156177438 156177647 -26237595 + L1MC4 LINE L1 7781 8009 -33 3873 114 92 5 chr6 156180486 156181093 -26234149 - PABL_A LTR ERV1 0 660 1 664 298 52 19 chr6 156183339 156183702 -26231540 - L1MC/D LINE L1 -2081 5727 5353 34 42 0 0 chr6 156183738 156183786 -26231456 + AT_rich Low_complexity Low_complexity 1 48 0 252 122 0 0 chr6 156183900 156183941 -26231301 + (TG)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 156185363 156185384 -26229858 + AT_rich Low_complexity Low_complexity 1 21 0 725 275 118 45 chr6 156185594 156186110 -26229132 + L1ME4a LINE L1 4357 4910 -1236 354 300 100 29 chr6 156186355 156186595 -26228647 + L1ME4a LINE L1 4971 5227 -919 391 246 118 55 chr6 156186723 156186863 -26228379 + L1ME4a LINE L1 5381 5511 -610 1962 121 103 0 chr6 156186863 156187145 -26228097 - AluSx SINE Alu -1 311 1 391 246 118 55 chr6 156187145 156187350 -26227892 + L1ME4a LINE L1 5511 5748 -373 260 304 59 0 chr6 156187526 156187661 -26227581 + L1ME4a LINE L1 5967 6109 -12 24 77 0 0 chr6 156187662 156187714 -26227528 + AT_rich Low_complexity Low_complexity 1 52 0 2095 98 36 0 chr6 156189353 156189628 -26225614 + AluSx SINE Alu 5 289 -23 214 140 20 20 chr6 156190217 156190267 -26224975 + GA-rich Low_complexity Low_complexity 5 54 0 1777 179 24 0 chr6 156190292 156190583 -26224659 + AluJb SINE Alu 5 302 -10 478 301 121 0 chr6 156190752 156190925 -26224317 + MIR SINE MIR 66 259 -3 182 156 22 0 chr6 156191718 156191763 -26223479 + (TA)n Simple_repeat Simple_repeat 2 47 0 271 286 65 65 chr6 156191953 156192121 -26223121 - MIR SINE MIR -82 180 13 293 340 135 7 chr6 156192402 156192543 -26222699 - MIR3 SINE MIR -23 185 27 2227 124 0 9 chr6 156192942 156193290 -26221952 + L1PA13 LINE L1 5818 6162 -1 293 61 0 20 chr6 156193794 156193843 -26221399 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 495 227 25 66 chr6 156197145 156197228 -26218014 + L1MC5 LINE L1 7746 7831 -130 2300 50 0 30 chr6 156197228 156197529 -26217713 + AluY SINE Alu 1 292 -19 495 227 25 66 chr6 156197529 156197643 -26217599 + L1MC5 LINE L1 7831 7935 -26 485 335 69 25 chr6 156197870 156198189 -26217053 + L3 LINE CR1 1242 1574 -3 240 35 0 0 chr6 156198697 156198726 -26216516 + (A)n Simple_repeat Simple_repeat 1 29 0 200 203 0 47 chr6 156199343 156199407 -26215835 + (TA)n Simple_repeat Simple_repeat 1 61 0 1765 169 20 20 chr6 156201323 156201671 -26213571 - MLT1A1 LTR MaLR -6 359 12 458 337 149 30 chr6 156201886 156202221 -26213021 + L1MC/D LINE L1 5415 5789 -2019 22 35 0 0 chr6 156202243 156202272 -26212970 + AT_rich Low_complexity Low_complexity 1 29 0 212 233 0 0 chr6 156202841 156202884 -26212358 + CT-rich Low_complexity Low_complexity 4 46 0 197 81 0 27 chr6 156203949 156203986 -26211256 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 2353 81 0 0 chr6 156203986 156204308 -26210934 - L1PA6 LINE L1 -24 6130 5809 520 246 16 80 chr6 156204700 156204887 -26210355 + MER5B DNA MER1_type 4 178 0 191 219 37 61 chr6 156204889 156204971 -26210271 + L2 LINE L2 3193 3272 0 2060 158 34 31 chr6 156205688 156206239 -26209003 - MLT2A2 LTR ERVL 0 554 1 738 197 9 21 chr6 156207226 156207392 -26207850 + MLT1A1 LTR MaLR 1 168 -214 1968 164 58 14 chr6 156207438 156207865 -26207377 + L1MA9 LINE L1 5775 6220 -92 2497 110 28 24 chr6 156207867 156208018 -26207224 + MSTA LTR MaLR 1 150 -278 2053 141 25 35 chr6 156208018 156208386 -26206856 - THE1B LTR MaLR 0 364 1 2497 110 28 24 chr6 156208386 156208660 -26206582 + MSTA LTR MaLR 150 428 0 571 122 0 0 chr6 156208665 156208755 -26206487 + L1MA9 LINE L1 6223 6312 0 753 206 25 34 chr6 156208826 156209030 -26206212 + MLT1A1 LTR MaLR 162 363 -2 1322 241 65 25 chr6 156209503 156209954 -26205288 + MLT1F LTR MaLR 5 465 -77 933 315 40 2 chr6 156210125 156210522 -26204720 + LTR16C LTR ERVL 80 491 0 2137 116 3 0 chr6 156212168 156212452 -26202790 + AluSx SINE Alu 1 285 -27 503 298 80 0 chr6 156212452 156212640 -26202602 - MIR SINE MIR -2 260 58 379 298 77 49 chr6 156212687 156212972 -26202270 + L1MEd LINE L1 843 1135 -4984 496 311 46 47 chr6 156212987 156213353 -26201889 + L1MEd LINE L1 1183 1603 -887 388 244 94 0 chr6 156214083 156214210 -26201032 - L1ME3A LINE L1 -178 5992 5854 249 108 0 0 chr6 156214259 156214296 -26200946 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 2513 102 19 16 chr6 156214564 156214938 -26200304 + THE1C LTR MaLR 1 375 0 10486 121 27 3 chr6 156214938 156216480 -26198762 + THE1C-int LTR MaLR 1 1578 -2 2192 104 28 17 chr6 156216481 156216835 -26198407 + THE1C LTR MaLR 18 375 0 307 236 11 22 chr6 156217232 156217321 -26197921 + L1ME LINE L1 5255 5342 -2466 236 299 45 75 chr6 156217420 156217644 -26197598 + L1ME LINE L1 5482 5694 -427 2219 99 23 3 chr6 156217644 156217946 -26197296 + AluSq SINE Alu 1 308 -5 236 299 45 75 chr6 156217946 156218055 -26197187 + L1ME LINE L1 5694 5805 -316 27 29 0 0 chr6 156218190 156218224 -26197018 + AT_rich Low_complexity Low_complexity 1 34 0 339 357 75 9 chr6 156219204 156219417 -26195825 + MIR SINE MIR 4 230 -32 5363 217 49 43 chr6 156221058 156221510 -26193732 - L1MD2 LINE L1 -123 6496 6048 483 18 0 0 chr6 156221510 156221566 -26193676 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 5363 217 49 43 chr6 156221566 156224259 -26190983 - L1MD2 LINE L1 -571 6048 3349 4382 216 81 79 chr6 156224270 156224548 -26190694 - L1MD2 LINE L1 -3218 3188 2912 1107 192 12 33 chr6 156224548 156224788 -26190454 + MER46A DNA MER2_type 2 236 0 4382 216 81 79 chr6 156224788 156226480 -26188762 - L1MD2 LINE L1 -3494 2912 1242 2752 32 0 0 chr6 156226480 156226791 -26188451 - AluY SINE Alu 0 311 1 4382 216 81 79 chr6 156226791 156227984 -26187258 - L1MD2 LINE L1 -5164 1242 53 5096 128 31 27 chr6 156228047 156228944 -26186298 + MER4D LTR ERV1 1 901 -2 2466 158 58 5 chr6 156229641 156230070 -26185172 + LTR47A LTR ERVL 1 452 0 4257 155 73 18 chr6 156230318 156231176 -26184066 - MER4D LTR ERV1 0 866 1 1666 181 11 11 chr6 156231365 156231647 -26183595 + AluJb SINE Alu 1 282 -30 4111 173 15 29 chr6 156232107 156232901 -26182341 - LTR39 LTR ERV1 0 783 1 2275 86 3 10 chr6 156233934 156234235 -26181007 + AluY SINE Alu 1 299 -12 831 199 93 163 chr6 156235820 156236594 -26178648 + LTR8A LTR ERV1 1 720 -7 253 294 83 28 chr6 156237405 156237514 -26177728 + MER20B DNA MER1_type 27 141 -78 425 232 66 29 chr6 156237526 156237722 -26177520 - LTR8A LTR ERV1 -86 609 340 409 265 84 12 chr6 156237716 156237882 -26177360 + MER20B DNA MER1_type 152 329 -454 * 502 100 21 179 chr6 156237895 156238035 -26177207 + LTR29 LTR ERV1 1 118 -526 22 56 0 0 chr6 156238048 156238084 -26177158 + AT_rich Low_complexity Low_complexity 1 36 0 612 271 119 67 chr6 156238277 156238356 -26176886 - L1ME3A LINE L1 -5 6165 6092 2169 115 20 7 chr6 156238356 156238652 -26176590 + AluSx SINE Alu 1 300 -12 612 271 119 67 chr6 156238652 156239033 -26176209 - L1ME3A LINE L1 -78 6092 5681 1869 85 49 4 chr6 156239175 156239422 -26175820 - AluSp SINE Alu -45 268 11 2828 162 83 27 chr6 156240073 156240672 -26174570 + LTR27 LTR ERV1 3 635 -1 2489 159 49 110 chr6 156241101 156241837 -26173405 + LTR34 LTR ERV1 3 693 -6 2262 104 0 13 chr6 156242141 156242448 -26172794 + AluSg SINE Alu 1 303 -7 226 234 0 0 chr6 156242658 156242705 -26172537 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 308 221 14 1 chr6 156242708 156242803 -26172439 + L1ME LINE L1 5748 5830 -332 24 67 0 0 chr6 156243073 156243118 -26172124 + AT_rich Low_complexity Low_complexity 1 45 0 298 225 56 0 chr6 156243118 156243207 -26172035 - L1MA9 LINE L1 -25 6287 6194 4127 170 24 9 chr6 156243232 156244442 -26170800 - L1MA9 LINE L1 -231 6081 4847 840 150 0 36 chr6 156244469 156244609 -26170633 + AluJb SINE Alu 1 135 -177 1831 112 8 8 chr6 156244609 156244876 -26170366 + AluSq SINE Alu 1 267 -46 1812 90 8 150 chr6 156244879 156245280 -26169962 + LTR14B LTR ERVK 1 608 0 590 183 0 0 chr6 156245310 156245414 -26169828 + AluJb SINE Alu 189 292 -20 2223 107 0 0 chr6 156245823 156246123 -26169119 + AluSx SINE Alu 9 308 -4 388 294 221 10 chr6 156247185 156247389 -26167853 + L2 LINE L2 1883 2129 -1185 524 297 112 61 chr6 156248108 156248630 -26166612 - L2 LINE L2 -43 3270 2699 250 288 55 0 chr6 156248637 156248710 -26166532 + MLT1I LTR MaLR 1 77 -332 623 180 57 0 chr6 156248713 156248835 -26166407 - MLT1C LTR MaLR -2 465 337 * 673 278 85 35 chr6 156248830 156249089 -26166153 + MLT1I LTR MaLR 80 351 -58 418 282 159 31 chr6 156249089 156249284 -26165958 + MER58A DNA MER1_type 4 223 -1 278 167 30 30 chr6 156249287 156249353 -26165889 + MLT1I LTR MaLR 344 409 0 911 275 84 48 chr6 156249372 156249743 -26165499 - L2 LINE L2 -639 2675 2292 473 321 51 54 chr6 156249911 156250207 -26165035 - HAL1 LINE L1 -1955 552 258 264 298 53 30 chr6 156251757 156251888 -26163354 - HAL1 LINE L1 -2270 237 104 27 29 0 0 chr6 156252019 156252053 -26163189 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chr6 156253061 156253098 -26162144 + AT_rich Low_complexity Low_complexity 1 37 0 857 251 38 11 chr6 156253570 156253833 -26161409 - L1MB7 LINE L1 0 6184 5915 296 150 50 0 chr6 156253828 156253888 -26161354 - L1MB7 LINE L1 -529 5637 5575 * 667 145 1 79 chr6 156253970 156254008 -26161234 - L1MC1 LINE L1 -5 6339 6300 2219 92 0 0 chr6 156254008 156254315 -26160927 + AluSg SINE Alu 1 307 0 667 145 1 79 chr6 156254315 156254444 -26160798 - L1MC1 LINE L1 -44 6300 6191 24 32 0 0 chr6 156304582 156304613 -26110629 + AT_rich Low_complexity Low_complexity 1 31 0 354 236 29 100 chr6 156304745 156304885 -26110357 + L2 LINE L2 3184 3313 0 3220 180 21 14 chr6 156305004 156305660 -26109582 + L1PB4 LINE L1 5494 6154 -2 180 306 32 16 chr6 156306872 156306934 -26108308 - MIR3 SINE MIR -35 173 111 21 82 0 0 chr6 156307103 156307152 -26108090 + AT_rich Low_complexity Low_complexity 1 49 0 2032 142 69 89 chr6 156308277 156308714 -26106528 + MSTA LTR MaLR 1 428 0 9030 170 38 4 chr6 156308714 156309149 -26106093 + MSTA-int LTR MaLR 1 420 -1231 233 29 29 0 chr6 156309149 156309183 -26106059 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 9030 170 38 4 chr6 156309183 156310339 -26104903 + MSTA-int LTR MaLR 420 1646 -5 2079 163 85 12 chr6 156310344 156310743 -26104499 + MSTA LTR MaLR 1 428 0 1065 190 0 26 chr6 156310855 156311050 -26104192 - AluJb SINE Alu -116 196 7 1801 315 54 5 chr6 156311182 156311797 -26103445 + L2 LINE L2 2171 2815 -499 2023 70 0 7 chr6 156313032 156313302 -26101940 - AluY SINE Alu 0 311 44 237 273 31 106 chr6 156315082 156315243 -26099999 + MIR SINE MIR 1 149 -59 22 88 0 0 chr6 156315256 156315313 -26099929 + AT_rich Low_complexity Low_complexity 1 57 0 296 340 99 26 chr6 156315413 156315645 -26099597 - MIR SINE MIR 0 262 14 289 123 231 0 chr6 156317172 156317237 -26098005 - MADE1 DNA Mariner 0 80 1 407 226 93 60 chr6 156317411 156317659 -26097583 + LTR33 LTR ERVL 13 268 -253 720 228 39 5 chr6 156318193 156318399 -26096843 - MER96B DNA MER1_type? -195 222 10 428 313 14 35 chr6 156318473 156318617 -26096625 + MIR SINE MIR 13 153 -109 765 230 155 17 chr6 156318706 156318945 -26096297 + MER46C DNA MER2_type 65 336 -2 308 213 16 0 chr6 156320177 156320238 -26095004 + MIR3 SINE MIR 98 159 -49 688 328 30 0 chr6 156320511 156320743 -26094499 - MIR SINE MIR -14 248 10 215 186 0 34 chr6 156320861 156320920 -26094322 + CT-rich Low_complexity Low_complexity 4 60 0 191 298 53 0 chr6 156321446 156321503 -26093739 + MIR SINE MIR 70 129 -133 230 302 102 12 chr6 156321782 156321904 -26093338 - MIR SINE MIR -67 141 21 22 0 0 0 chr6 156322471 156322493 -26092749 + AT_rich Low_complexity Low_complexity 1 22 0 246 353 29 24 chr6 156322645 156322815 -26092427 + L2 LINE L2 1850 2020 -1294 320 239 177 9 chr6 156323592 156323705 -26091537 + MIR SINE MIR 118 249 -13 342 276 155 0 chr6 156325162 156325278 -26089964 + MIR SINE MIR 6 139 -123 184 302 38 0 chr6 156326472 156326525 -26088717 + MER5A DNA MER1_type 89 143 -46 369 305 111 48 chr6 156327535 156327886 -26087356 + L1MC4a LINE L1 4932 5304 -842 547 314 62 31 chr6 156327896 156328447 -26086795 + L1MC4a LINE L1 5314 5881 -1927 279 288 123 55 chr6 156328879 156329098 -26086144 + MLT1H LTR MaLR 189 422 -127 1089 211 10 5 chr6 156329473 156329677 -26085565 - MER58A DNA MER1_type -19 205 1 3492 97 10 0 chr6 156330119 156330602 -26084640 - L1PA11 LINE L1 -8 6166 5679 6651 136 22 7 chr6 156330603 156330648 -26084594 + L1P4 LINE L1 4220 4263 -1905 2196 133 0 0 chr6 156330648 156330956 -26084286 - AluSg SINE Alu -2 308 1 6651 136 22 7 chr6 156330956 156332168 -26083074 + L1P4 LINE L1 4263 5489 -679 5313 39 8 0 chr6 156332159 156332947 -26082295 + L1PA6 LINE L1 5115 5907 -247 * 21 36 0 0 chr6 156332947 156332975 -26082267 + AT_rich Low_complexity Low_complexity 1 28 0 1522 88 10 0 chr6 156332976 156333181 -26082061 + L1P4 LINE L1 5480 5686 -488 198 300 80 0 chr6 156333389 156333439 -26081803 - L2 LINE L2 -96 3176 3123 317 293 40 60 chr6 156333594 156333744 -26081498 + MIR SINE MIR 51 197 -65 198 303 45 22 chr6 156334585 156334674 -26080568 - L3 LINE CR1 -1084 493 403 396 155 14 0 chr6 156335191 156335262 -26079980 + LTR30 LTR ERV1 552 623 -99 207 0 0 0 chr6 156335262 156335285 -26079957 + (A)n Simple_repeat Simple_repeat 1 23 0 358 247 34 0 chr6 156335998 156336087 -26079155 - L2 LINE L2 -1 3312 3221 267 268 55 61 chr6 156336165 156336329 -26078913 - LTR33A LTR ERVL -80 443 281 392 319 60 18 chr6 156336366 156336532 -26078710 - LTR33 LTR ERVL -317 204 32 1575 201 10 20 chr6 156336744 156337042 -26078200 + AluJo SINE Alu 12 306 -6 1052 289 67 26 chr6 156337298 156337619 -26077623 - L1ME3A LINE L1 -221 6018 5712 2400 77 3 7 chr6 156337619 156337917 -26077325 - AluSp SINE Alu -16 297 1 1052 289 67 26 chr6 156337917 156338385 -26076857 - L1ME3A LINE L1 -527 5712 5190 505 248 76 0 chr6 156338482 156338639 -26076603 + MER58B DNA MER1_type 169 337 -4 902 291 129 45 chr6 156338714 156340314 -26074928 - L1ME3A LINE L1 -1300 4915 3181 349 248 34 20 chr6 156340350 156340499 -26074743 - L1ME3A LINE L1 -3255 2960 2810 559 300 64 42 chr6 156340527 156340825 -26074417 - L1ME3A LINE L1 -3376 2839 2527 1692 46 0 0 chr6 156340825 156341050 -26074192 - AluY SINE Alu 0 310 86 559 300 64 42 chr6 156341050 156341157 -26074085 - L1ME3A LINE L1 -3688 2527 2424 842 238 119 28 chr6 156341453 156341785 -26073457 - MER93b LTR ERV1 -4 399 5 2283 114 0 0 chr6 156341785 156342092 -26073150 + AluSc SINE Alu 1 307 -2 398 268 74 60 chr6 156342094 156342393 -26072849 - L1ME3A LINE L1 -4220 2176 1874 249 272 52 69 chr6 156342414 156342536 -26072706 - L1ME3A LINE L1 -4972 1233 1112 2389 8 4 0 chr6 156342536 156342822 -26072420 + AluYb8 SINE Alu 28 314 0 249 272 52 69 chr6 156342822 156342871 -26072371 - L1ME3A LINE L1 -5093 1112 1064 907 237 81 0 chr6 156344450 156344648 -26070594 + MER20 DNA MER1_type 6 219 0 698 166 147 25 chr6 156346527 156346690 -26068552 - MER3 DNA MER1_type -17 192 10 820 182 13 13 chr6 156346974 156347128 -26068114 + MER5B DNA MER1_type 5 158 -20 294 216 59 118 chr6 156347612 156347765 -26067477 + MLT1K LTR MaLR 414 557 -31 197 301 27 27 chr6 156349178 156349251 -26065991 + L3 LINE CR1 1488 1560 -17 1152 153 131 51 chr6 156350315 156350551 -26064691 - L1PA15 LINE L1 -3 6162 5908 * 1379 129 43 4 chr6 156350538 156350770 -26064472 - L1PA15 LINE L1 -460 5705 5465 * 2337 238 14 21 chr6 156350760 156351390 -26063852 + L1P LINE L1 3063 3688 -2458 21 0 0 0 chr6 156351401 156351422 -26063820 + AT_rich Low_complexity Low_complexity 1 21 0 607 243 107 24 chr6 156351507 156351676 -26063566 - MIR SINE MIR -55 207 25 361 328 31 8 chr6 156352249 156352377 -26062865 - MIR3 SINE MIR -28 180 50 4802 267 81 30 chr6 156352478 156352554 -26062688 + L1ME1 LINE L1 46 117 -6098 2402 60 0 31 chr6 156352554 156352872 -26062370 - AluY SINE Alu -3 308 1 4802 267 81 30 chr6 156352872 156355852 -26059390 + L1ME1 LINE L1 117 3223 -2992 1969 258 24 26 chr6 156355825 156356485 -26058757 + L1ME1 LINE L1 3753 4411 -1804 * 5175 174 39 22 chr6 156356526 156357591 -26057651 + L1MC3 LINE L1 6702 7783 -2 2951 232 93 17 chr6 156357653 156359185 -26056057 + L1ME1 LINE L1 4570 6215 -20 2200 123 10 3 chr6 156359314 156359624 -26055618 + AluSx SINE Alu 1 312 0 275 247 165 41 chr6 156360566 156360663 -26054579 - MIR SINE MIR -110 152 44 1934 106 0 4 chr6 156361771 156362035 -26053207 + AluSc SINE Alu 11 273 -36 237 65 0 0 chr6 156362037 156362068 -26053174 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1654 213 102 17 chr6 156362175 156362597 -26052645 - MLT1C LTR MaLR 0 467 10 445 284 76 59 chr6 156363755 156364540 -26050702 + L1MEd LINE L1 641 1529 -961 391 305 60 60 chr6 156364642 156364683 -26050559 + L1MEd LINE L1 2104 2144 -3985 2254 124 0 0 chr6 156364683 156364990 -26050252 + AluSq SINE Alu 1 307 -6 391 305 60 60 chr6 156364990 156365345 -26049897 + L1MEd LINE L1 2143 2500 -3629 2166 112 0 10 chr6 156365526 156365838 -26049404 - AluSx SINE Alu -3 309 1 1434 170 12 8 chr6 156366050 156366297 -26048945 - AluJo SINE Alu -26 286 39 361 333 56 39 chr6 156366491 156366725 -26048517 + L2 LINE L2 2040 2277 -1037 372 308 147 24 chr6 156367335 156367546 -26047696 + MIR SINE MIR 19 255 -7 283 312 78 44 chr6 156368864 156369426 -26045816 + L1MEd LINE L1 906 1580 -910 1397 206 54 54 chr6 156369688 156370150 -26045092 + LTR40b LTR ERVL 1 462 0 236 263 20 20 chr6 156370744 156370843 -26044399 + L1MEd LINE L1 2240 2338 -3791 221 284 25 74 chr6 156372356 156372437 -26042805 + L2 LINE L2 3127 3203 -69 669 213 31 12 chr6 156372505 156372665 -26042577 + MER3 DNA MER1_type 1 163 -46 524 316 26 11 chr6 156373034 156373224 -26042018 + L2 LINE L2 1564 1756 -1558 197 339 31 39 chr6 156373425 156373555 -26041687 - MIR SINE MIR -110 152 24 22 35 0 0 chr6 156373555 156373584 -26041658 + AT_rich Low_complexity Low_complexity 1 29 0 2762 144 0 8 chr6 156375015 156375556 -26039686 + L1PA13 LINE L1 4893 5428 -740 1364 86 10 0 chr6 156375556 156375751 -26039491 + L1PA7 LINE L1 5956 6154 0 4520 133 29 4 chr6 156375751 156376473 -26038769 + L1PA13 LINE L1 5413 6159 -4 306 307 80 45 chr6 156376674 156376850 -26038392 + L2 LINE L2 3073 3254 -18 186 236 0 0 chr6 156377333 156377388 -26037854 + GA-rich Low_complexity Low_complexity 4 58 0 180 250 21 21 chr6 156377882 156377930 -26037312 + L2 LINE L2 2898 2945 -368 1098 116 6 50 chr6 156378661 156378735 -26036507 - MER4D LTR ERV1 0 779 703 3885 101 13 0 chr6 156378735 156379282 -26035960 + MER41A LTR ERV1 1 554 0 1098 116 6 50 chr6 156379282 156379388 -26035854 - MER4D LTR ERV1 -76 703 607 3017 168 25 17 chr6 156379755 156380331 -26034911 - MER4D LTR ERV1 -285 544 1 23 54 0 0 chr6 156380806 156380843 -26034399 + AT_rich Low_complexity Low_complexity 1 37 0 230 314 117 21 chr6 156381181 156381369 -26033873 + MIR SINE MIR 29 234 -28 257 238 0 38 chr6 156381382 156381462 -26033780 + (CTA)n Simple_repeat Simple_repeat 1 77 0 697 219 11 51 chr6 156382094 156382272 -26032970 + FAM SINE Alu 2 172 -3 1473 126 5 14 chr6 156383067 156383289 -26031953 + AluSg SINE Alu 6 225 -85 2327 79 3 0 chr6 156384015 156384318 -26030924 - AluY SINE Alu -7 304 1 233 310 90 60 chr6 156385204 156385404 -26029838 - L2 LINE L2 -525 2789 2584 377 331 34 14 chr6 156385715 156385863 -26029379 + MIR3 SINE MIR 36 186 -22 309 220 0 0 chr6 156386764 156386823 -26028419 + MLT1K LTR MaLR 522 580 -8 301 212 15 0 chr6 156387711 156387777 -26027465 - Charlie4 DNA MER1_type -3 1958 1892 497 296 65 58 chr6 156387885 156388145 -26027097 + L2 LINE L2 2560 2821 -493 566 307 74 33 chr6 156388162 156388406 -26026836 - MIR SINE MIR 0 262 9 283 328 47 42 chr6 156388405 156388597 -26026645 + L2 LINE L2 2821 3013 -300 * 3339 121 31 20 chr6 156388655 156389207 -26026035 - LTR10C LTR ERV1 -28 529 1 254 224 303 0 chr6 156389345 156389421 -26025821 + MLT1L LTR MaLR 155 253 -362 1977 138 39 36 chr6 156389432 156389795 -26025447 + THE1B LTR MaLR 1 364 0 726 194 0 0 chr6 156390017 156390146 -26025096 - FLAM_A SINE Alu -4 129 1 486 288 93 34 chr6 156390248 156390484 -26024758 + L2 LINE L2 3019 3268 -45 282 257 14 14 chr6 156390549 156390619 -26024623 + MIR SINE MIR 176 245 -17 227 114 0 0 chr6 156390652 156390687 -26024555 + L2 LINE L2 3278 3312 -1 216 200 25 0 chr6 156390919 156390959 -26024283 - L2 LINE L2 -64 3208 3168 936 331 40 60 chr6 156392050 156392091 -26023151 + L3 LINE CR1 430 470 -1107 2382 163 52 0 chr6 156392091 156392496 -26022746 + MSTB LTR MaLR 1 426 0 936 331 40 60 chr6 156392496 156392883 -26022359 + L3 LINE CR1 470 843 -734 1354 206 107 21 chr6 156392883 156393267 -26021975 + LTR52 LTR ERVL 1 417 -4 936 331 40 60 chr6 156393267 156393483 -26021759 + L3 LINE CR1 843 1062 -515 * 1883 235 149 40 chr6 156393482 156394325 -26020917 + L2 LINE L2 2128 3062 -251 386 304 36 91 chr6 156394417 156394670 -26020572 + L3 LINE CR1 1165 1403 -174 2340 95 0 0 chr6 156394865 156395159 -26020083 - AluSq SINE Alu -19 294 1 360 0 0 0 chr6 156395366 156395406 -26019836 + (CA)n Simple_repeat Simple_repeat 2 41 0 182 37 37 0 chr6 156396363 156396390 -26018852 + (CA)n Simple_repeat Simple_repeat 2 29 0 465 271 113 20 chr6 156397161 156397312 -26017930 + MIR SINE MIR 67 231 -31 344 301 0 0 chr6 156397337 156397420 -26017822 - MIR3 SINE MIR -25 183 101 294 281 113 67 chr6 156398424 156398662 -26016580 - MIR SINE MIR -6 256 8 1502 198 15 76 chr6 156398708 156399102 -26016140 + MLT1A2 LTR MaLR 1 370 -4 510 244 16 16 chr6 156400240 156400363 -26014879 - MIR3 SINE MIR -14 194 72 1743 94 0 33 chr6 156401283 156401528 -26013714 + AluSg/x SINE Alu 76 312 0 740 190 0 0 chr6 156404212 156404328 -26010914 + FLAM_C SINE Alu 1 116 -17 2523 62 0 3 chr6 156404366 156404672 -26010570 - AluY SINE Alu -6 305 1 829 226 6 47 chr6 156404673 156404939 -26010303 + MLT1B LTR MaLR 128 388 -2 21 0 0 0 chr6 156404982 156405003 -26010239 + AT_rich Low_complexity Low_complexity 1 21 0 1194 150 21 6 chr6 156405031 156405318 -26009924 + MER47A DNA MER2_type 1 366 0 350 330 39 0 chr6 156405364 156405467 -26009775 + L2 LINE L2 3166 3272 0 243 228 60 48 chr6 156407165 156407332 -26007910 + HsTC2 DNA Tc2 1725 1893 -5 738 213 0 0 chr6 156407506 156407628 -26007614 + FLAM_A SINE Alu 1 122 -11 209 316 151 22 chr6 156408371 156408510 -26006732 + L2 LINE L2 2905 3061 -211 407 219 31 10 chr6 156408792 156408888 -26006354 + MER58 DNA MER1_type 1 98 -117 2409 92 0 0 chr6 156408961 156409264 -26005978 + AluSc SINE Alu 1 303 -6 2298 96 3 19 chr6 156409875 156410219 -26005023 - AluSc SINE Alu 0 339 1 185 294 0 0 chr6 156410228 156410279 -26004963 - L2 LINE L2 -1016 2298 2248 218 332 130 36 chr6 156410312 156410535 -26004707 - L2 LINE L2 -1153 2161 1918 279 344 110 37 chr6 156410636 156410854 -26004388 + MIR SINE MIR 29 262 0 2333 121 9 0 chr6 156411775 156412106 -26003136 - MER1B DNA MER1_type 0 337 4 559 285 19 13 chr6 156413198 156413356 -26001886 + MIR SINE MIR 70 228 -34 2632 192 46 40 chr6 156413719 156414348 -26000894 + LTR27 LTR ERV1 4 636 0 2672 78 18 44 chr6 156415079 156415293 -25999949 - THE1C LTR MaLR 0 375 157 1520 74 111 100 chr6 156415293 156415564 -25999678 + AluY SINE Alu 1 274 -37 203 0 37 0 chr6 156415571 156415598 -25999644 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2672 78 18 44 chr6 156415598 156415760 -25999482 - THE1C LTR MaLR -224 151 1 208 231 0 0 chr6 156417269 156417308 -25997934 + polypurine Low_complexity Low_complexity 4 42 0 219 146 0 0 chr6 156417715 156417756 -25997486 + (TAAAAA)n Simple_repeat Simple_repeat 5 45 0 645 183 74 23 chr6 156417819 156417994 -25997248 + MER105 DNA DNA 4 187 -17 369 43 0 0 chr6 156418112 156418159 -25997083 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr6 156419012 156419040 -25996202 + AT_rich Low_complexity Low_complexity 1 28 0 703 234 37 21 chr6 156419518 156419706 -25995536 + MIR SINE MIR 70 260 -2 316 270 75 46 chr6 156420459 156420633 -25994609 - L2 LINE L2 0 3313 3135 1749 132 97 23 chr6 156420829 156421178 -25994064 + THE1C LTR MaLR 1 375 0 192 333 0 0 chr6 156421518 156421566 -25993676 - MIR SINE MIR -183 79 32 231 291 116 12 chr6 156422457 156422543 -25992699 - MIR SINE MIR -51 211 117 1993 94 83 0 chr6 156423771 156424048 -25991194 - AluSg SINE Alu -10 300 1 1412 171 88 18 chr6 156424688 156424962 -25990280 - AluJo SINE Alu -19 293 1 325 294 49 55 chr6 156425014 156425177 -25990065 - MIR SINE MIR -17 245 84 2211 123 0 3 chr6 156425206 156425515 -25989727 + AluSq SINE Alu 1 308 -5 2044 131 7 0 chr6 156426710 156427000 -25988242 + AluSq SINE Alu 2 293 -20 294 373 36 0 chr6 156427354 156427464 -25987778 + L2 LINE L2 3149 3262 -10 2263 99 17 0 chr6 156429090 156429392 -25985850 - AluSp SINE Alu -6 307 1 2243 103 7 3 chr6 156429415 156429717 -25985525 + AluSq SINE Alu 1 303 -10 3624 188 14 57 chr6 156430641 156432075 -25983167 + L1MB5 LINE L1 4777 6153 -21 3805 141 34 34 chr6 156432995 156433721 -25981521 + LTR8A LTR ERV1 1 726 -1 2858 205 18 69 chr6 156434486 156435307 -25979935 + MER4E LTR ERV1 1 779 0 810 124 8 16 chr6 156435904 156436062 -25979180 - FLAM_C SINE Alu 0 133 1 2097 135 0 0 chr6 156436503 156436806 -25978436 + AluSx SINE Alu 1 303 -9 421 286 129 0 chr6 156437140 156437295 -25977947 + MIR SINE MIR 8 178 -64 2558 50 0 0 chr6 156437802 156438101 -25977141 + AluY SINE Alu 1 299 -12 395 283 183 57 chr6 156439183 156439317 -25975925 + MIR SINE MIR 2 118 -144 2587 116 0 2 chr6 156439317 156439715 -25975527 + L1PA13 LINE L1 5764 6160 -3 395 283 183 57 chr6 156439715 156439810 -25975432 + MIR SINE MIR 118 260 -2 346 352 71 82 chr6 156439935 156440384 -25974858 + L2 LINE L2 2828 3271 -1 2197 105 0 0 chr6 156441611 156441925 -25973317 - AluSx SINE Alu 0 314 1 23 0 0 0 chr6 156443300 156443323 -25971919 + AT_rich Low_complexity Low_complexity 1 23 0 701 269 103 49 chr6 156443468 156443818 -25971424 + L2 LINE L2 2942 3310 -3 360 0 0 0 chr6 156443904 156443944 -25971298 + (CA)n Simple_repeat Simple_repeat 1 40 0 2386 98 0 0 chr6 156444151 156444448 -25970794 + AluSg SINE Alu 1 297 -13 709 270 58 9 chr6 156444509 156444735 -25970507 - ERVL LTR ERVL -1342 4422 4186 453 158 105 0 chr6 156445551 156445646 -25969596 - MIR SINE MIR -10 252 148 971 254 37 28 chr6 156445651 156445978 -25969264 - MER46C DNA MER2_type -7 331 2 312 392 9 5 chr6 156446162 156446379 -25968863 - ERVL LTR ERVL -5138 626 409 531 245 37 37 chr6 156446997 156447185 -25968057 - LTR33 LTR ERVL -308 213 26 394 282 132 0 chr6 156447210 156447354 -25967888 - MIR SINE MIR -41 167 3 1599 189 0 47 chr6 156447876 156448194 -25967048 + AluJo SINE Alu 1 303 -9 450 306 97 28 chr6 156448618 156448991 -25966251 - L1MEc LINE L1 -3677 2538 2179 349 278 7 90 chr6 156449020 156449164 -25966078 + L1M4 LINE L1 4037 4168 -1978 677 293 88 53 chr6 156449190 156449814 -25965428 + L1M4 LINE L1 4259 4896 -1250 323 286 69 51 chr6 156449891 156450066 -25965176 - L1MDa LINE L1 -3318 3222 3045 767 139 7 36 chr6 156450322 156450459 -25964783 - FLAM_C SINE Alu -10 133 1 478 287 98 22 chr6 156450460 156450938 -25964304 - L1MDa LINE L1 -3705 2835 2323 29 70 0 0 chr6 156451048 156451105 -25964137 + AT_rich Low_complexity Low_complexity 1 57 0 202 301 48 36 chr6 156451267 156451350 -25963892 - L2 LINE L2 -234 3038 2955 416 275 129 11 chr6 156451371 156451549 -25963693 + Charlie8 DNA MER1_type 47 245 -2172 392 350 76 35 chr6 156451643 156452012 -25963230 - L2 LINE L2 -569 2745 2362 213 326 139 0 chr6 156452025 156452111 -25963131 + L2 LINE L2 3156 3253 -19 305 272 87 0 chr6 156452167 156452259 -25962983 - L2 LINE L2 -996 2318 2219 201 139 0 0 chr6 156452848 156452891 -25962351 + (A)n Simple_repeat Simple_repeat 1 43 0 1703 303 98 67 chr6 156453250 156453450 -25961792 - L1MC5 LINE L1 -94 7867 7675 1438 171 53 50 chr6 156453450 156453763 -25961479 + AluJb SINE Alu 1 314 0 1703 303 98 67 chr6 156453763 156454701 -25960541 - L1MC5 LINE L1 -286 7675 6692 277 328 35 35 chr6 156454803 156454919 -25960323 + L2 LINE L2 3150 3265 -7 1429 218 39 14 chr6 156454945 156455307 -25959935 + MLT1C LTR MaLR 97 467 0 2554 58 3 0 chr6 156455349 156455658 -25959584 - AluY SINE Alu -1 310 1 453 127 0 0 chr6 156455690 156455753 -25959489 + AluS SINE Alu 2 64 -245 470 174 52 17 chr6 156455754 156455869 -25959373 + MER66B LTR ERV1 368 486 0 209 362 0 0 chr6 156456260 156456329 -25958913 + MIR SINE MIR 38 106 -102 360 314 51 24 chr6 156456432 156456687 -25958555 + MIR SINE MIR 1 262 0 46 19 0 0 chr6 156456990 156457043 -25958199 + AT_rich Low_complexity Low_complexity 1 53 0 306 250 0 11 chr6 156457800 156457892 -25957350 + L1MC4 LINE L1 7576 7666 -376 2054 147 0 6 chr6 156458106 156458419 -25956823 - AluSx SINE Alu 0 312 2 188 294 87 0 chr6 156459403 156459495 -25955747 + MIR SINE MIR 147 246 -16 787 285 62 4 chr6 156459797 156460039 -25955203 + MIR SINE MIR 7 262 0 213 283 159 9 chr6 156461255 156461368 -25953874 + MIR SINE MIR 92 221 -41 1305 196 98 25 chr6 156462840 156463345 -25951897 + L1MB3 LINE L1 5109 5651 -532 1328 220 24 82 chr6 156463345 156463758 -25951484 + MSTD LTR MaLR 1 389 -7 535 180 0 20 chr6 156463758 156463858 -25951384 + L1MB3 LINE L1 5646 5743 -440 1896 160 34 6 chr6 156463863 156464219 -25951023 + L1MB3 LINE L1 5809 6174 -9 622 282 104 0 chr6 156464242 156464462 -25950780 + MIR SINE MIR 20 262 0 354 337 209 5 chr6 156466057 156466244 -25948998 + MIR SINE MIR 20 244 -18 22 35 0 0 chr6 156466749 156466778 -25948464 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr6 156467996 156468031 -25947211 + AT_rich Low_complexity Low_complexity 1 35 0 361 235 118 52 chr6 156468169 156468441 -25946801 + L1ME4a LINE L1 1331 1620 -4910 358 260 102 36 chr6 156468522 156468718 -25946524 + L1ME4a LINE L1 1733 1941 -4599 363 311 78 39 chr6 156468741 156468947 -25946295 + L1ME4a LINE L1 2435 2648 -3892 2730 137 162 26 chr6 156468969 156469612 -25945630 + L1 LINE L1 4089 4818 -1328 1910 170 46 25 chr6 156469613 156470049 -25945193 - L1 LINE L1 -1393 4753 4309 1317 124 9 0 chr6 156470051 156470261 -25944981 + L1MA2 LINE L1 6093 6304 0 33 0 0 0 chr6 156470261 156470294 -25944948 + AT_rich Low_complexity Low_complexity 1 33 0 465 295 81 23 chr6 156470294 156470555 -25944687 + L1ME4a LINE L1 2683 2958 -3582 320 190 20 50 chr6 156470849 156470949 -25944293 - L1MC5 LINE L1 -45 7916 7820 440 202 123 9 chr6 156471075 156471189 -25944053 - L1MC5 LINE L1 -324 7637 7511 1573 282 45 22 chr6 156471269 156471804 -25943438 + MLT1H1 LTR MaLR 1 547 -8 326 314 61 17 chr6 156472232 156472566 -25942676 + L1ME4a LINE L1 3939 4303 -2237 31 26 0 0 chr6 156472878 156472916 -25942326 + AT_rich Low_complexity Low_complexity 1 38 0 366 268 98 47 chr6 156473410 156473664 -25941578 + L1ME4a LINE L1 5770 6036 -479 1802 116 77 7 chr6 156473781 156474066 -25941176 - AluSx SINE Alu -7 305 1 22 0 0 0 chr6 156474075 156474097 -25941145 + AT_rich Low_complexity Low_complexity 1 22 0 301 293 73 31 chr6 156474100 156474291 -25940951 + L1ME4a LINE L1 6115 6313 -202 198 371 0 0 chr6 156476465 156476535 -25938707 - MIR SINE MIR -109 99 30 23 0 0 0 chr6 156476870 156476893 -25938349 + AT_rich Low_complexity Low_complexity 1 23 0 771 277 25 41 chr6 156477553 156477795 -25937447 - MIR SINE MIR -10 252 15 5180 178 36 22 chr6 156478029 156479437 -25935805 + L1MA9 LINE L1 4881 6312 0 24 0 0 0 chr6 156479514 156479538 -25935704 + AT_rich Low_complexity Low_complexity 1 24 0 360 300 12 38 chr6 156479575 156479735 -25935507 - L2 LINE L2 0 3313 3158 37 23 0 0 chr6 156479843 156479887 -25935355 + AT_rich Low_complexity Low_complexity 1 44 0 282 266 0 47 chr6 156480564 156480628 -25934614 + L2 LINE L2 3122 3182 -90 641 335 57 55 chr6 156480938 156481394 -25933848 - MLT1K LTR MaLR 0 588 132 316 203 14 40 chr6 156481578 156481652 -25933590 - L2 LINE L2 0 3313 3242 799 281 68 20 chr6 156482004 156482253 -25932989 - MIR SINE MIR 0 262 2 2232 169 23 64 chr6 156482540 156483026 -25932216 + MLT1C LTR MaLR 2 467 0 564 323 43 24 chr6 156484050 156484304 -25930938 + MIR SINE MIR 2 260 -2 3159 163 55 205 chr6 156484328 156484681 -25930561 + L1MC3 LINE L1 5917 6321 -1464 2055 151 0 0 chr6 156484681 156484986 -25930256 + AluSx SINE Alu 1 305 -7 3159 163 55 205 chr6 156484986 156485951 -25929291 + L1MC3 LINE L1 6321 7017 -768 260 319 53 9 chr6 156486801 156486914 -25928328 - MIR SINE MIR -125 137 20 25 51 0 0 chr6 156487703 156487742 -25927500 + AT_rich Low_complexity Low_complexity 1 39 0 2197 123 3 0 chr6 156488345 156488647 -25926595 + AluSx SINE Alu 1 303 -9 1215 183 100 4 chr6 156489413 156489653 -25925589 + AluJo SINE Alu 36 298 -14 288 0 0 0 chr6 156489938 156489970 -25925272 + (TA)n Simple_repeat Simple_repeat 2 33 0 412 232 95 134 chr6 156489983 156490289 -25924953 - L2 LINE L2 -7 3306 3013 1040 206 81 34 chr6 156490292 156490612 -25924630 + LTR56 LTR ERV1 3 337 -108 350 145 79 0 chr6 156490641 156490717 -25924525 + LTR23 LTR ERV1 353 434 -3 214 331 0 31 chr6 156490854 156490984 -25924258 + CT-rich Low_complexity Low_complexity 1 126 0 22 70 0 0 chr6 156491255 156491298 -25923944 + AT_rich Low_complexity Low_complexity 1 43 0 358 295 93 0 chr6 156491660 156491789 -25923453 + MIR SINE MIR 105 245 -17 201 74 0 0 chr6 156491797 156491824 -25923418 + (CTG)n Simple_repeat Simple_repeat 2 28 0 1871 191 82 61 chr6 156492367 156492876 -25922366 - MLT2B1 LTR ERVL 0 520 1 1711 196 78 55 chr6 156492879 156493421 -25921821 - L1M4 LINE L1 -2055 4589 4036 * 3563 250 40 24 chr6 156493419 156494339 -25920903 - L1M4 LINE L1 -5574 968 34 24 32 0 0 chr6 156494636 156494667 -25920575 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 156494691 156494714 -25920528 + AT_rich Low_complexity Low_complexity 1 23 0 831 327 84 25 chr6 156496019 156496588 -25918654 + L2 LINE L2 1915 2517 -797 624 243 78 14 chr6 156496662 156496880 -25918362 + MLT1L LTR MaLR 149 380 -235 535 221 99 55 chr6 156497010 156497191 -25918051 - MER5A DNA MER1_type 0 189 1 495 365 61 3 chr6 156497278 156497571 -25917671 + L2 LINE L2 2448 2757 -557 250 353 37 74 chr6 156497622 156497999 -25917243 + L2 LINE L2 2837 3199 -73 399 248 77 36 chr6 156498111 156498247 -25916995 - MIR SINE MIR -54 154 15 190 287 149 23 chr6 156498821 156498908 -25916334 + L2 LINE L2 3155 3252 -20 481 238 8 0 chr6 156499854 156499976 -25915266 + L1MC4 LINE L1 7684 7806 -236 301 259 111 0 chr6 156503660 156503741 -25911501 + L2 LINE L2 3215 3304 -9 11561 102 12 2 chr6 156505108 156506890 -25908352 + L1P LINE L1 3464 5263 -883 30 27 0 0 chr6 156507708 156507745 -25907497 + AT_rich Low_complexity Low_complexity 1 37 0 308 205 134 16 chr6 156507753 156507880 -25907362 + L1ME4a LINE L1 5980 6121 0 22 0 0 0 chr6 156508215 156508237 -25907005 + AT_rich Low_complexity Low_complexity 1 22 0 343 320 90 0 chr6 156508575 156508697 -25906545 - L2 LINE L2 0 3313 3181 225 196 0 0 chr6 156508823 156508869 -25906373 + CT-rich Low_complexity Low_complexity 3 48 0 987 190 111 4 chr6 156508884 156509163 -25906079 + MER33 DNA MER1_type 1 309 -15 2209 74 10 55 chr6 156510286 156510596 -25904646 - AluY SINE Alu -13 298 3 607 297 127 39 chr6 156510752 156511217 -25904025 - L2 LINE L2 0 3313 2808 509 201 36 107 chr6 156511236 156511304 -25903938 + L1MC4 LINE L1 7702 7773 -269 1897 153 93 52 chr6 156511304 156511743 -25903499 - MSTB2 LTR MaLR 0 457 1 509 201 36 107 chr6 156511743 156511898 -25903344 + L1MC4 LINE L1 7773 7909 -133 182 364 13 0 chr6 156511942 156512019 -25903223 + L2 LINE L2 2703 2780 -534 499 246 31 62 chr6 156512295 156512490 -25902752 - MER115 DNA AcHobo -43 650 462 1846 182 106 5 chr6 156512557 156512963 -25902279 - MER54A LTR ERVL -2 899 453 342 0 0 0 chr6 156513081 156513119 -25902123 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr6 156513353 156513391 -25901851 + AT_rich Low_complexity Low_complexity 1 38 0 2853 180 27 13 chr6 156513478 156514029 -25901213 + MER89 LTR ERV1 1 559 0 576 252 26 20 chr6 156514850 156515001 -25900241 + MER5A DNA MER1_type 36 187 -2 185 368 92 33 chr6 156515017 156515354 -25899888 + L2 LINE L2 2174 2530 -784 242 289 189 0 chr6 156515394 156515484 -25899758 - L2 LINE L2 -15 3257 3151 306 279 38 33 chr6 156515899 156516082 -25899160 - HAL1 LINE L1 0 2507 2324 1194 248 49 18 chr6 156516522 156516849 -25898393 + MER58B DNA MER1_type 4 340 -1 1999 113 26 26 chr6 156517902 156518204 -25897038 + AluSq SINE Alu 1 302 -11 1608 189 3 7 chr6 156519248 156519534 -25895708 - AluJb SINE Alu -27 285 1 252 326 0 0 chr6 156520552 156520638 -25894604 - MARNA DNA Mariner -417 169 84 738 273 0 0 chr6 156520657 156520811 -25894431 + MIR SINE MIR 3 156 -106 316 333 72 22 chr6 156522081 156522261 -25892981 + MER5A DNA MER1_type 1 189 0 2106 97 12 50 chr6 156522507 156522827 -25892415 + AluSq SINE Alu 1 308 -5 237 241 0 0 chr6 156524230 156524288 -25890954 - MIR SINE MIR -4 258 201 326 298 62 55 chr6 156524528 156524680 -25890562 - MIR SINE MIR -62 146 40 2086 149 7 0 chr6 156524868 156525169 -25890073 - AluSx SINE Alu -9 303 1 21 0 0 0 chr6 156525445 156525466 -25889776 + AT_rich Low_complexity Low_complexity 1 21 0 294 428 57 0 chr6 156526092 156526251 -25888991 - L2 LINE L2 -230 3042 2875 194 260 39 26 chr6 156526503 156526580 -25888662 - L2 LINE L2 -1105 2209 2132 869 253 38 55 chr6 156527130 156527474 -25887768 + L1MC4a LINE L1 6540 6877 -931 859 219 181 58 chr6 156527469 156527669 -25887573 + L1MC4 LINE L1 7137 7311 -731 * 2034 98 49 3 chr6 156527669 156527956 -25887286 + AluSc SINE Alu 1 300 -9 2639 145 121 4 chr6 156527960 156528457 -25886785 + LTR64 LTR ERVK 3 557 -1 859 219 181 58 chr6 156528457 156528702 -25886540 + L1MC4 LINE L1 7313 7527 -515 2296 109 13 0 chr6 156528702 156529004 -25886238 + AluSc SINE Alu 1 306 -3 859 219 181 58 chr6 156529004 156529266 -25885976 + L1MC4 LINE L1 7527 8037 -5 189 0 0 0 chr6 156529770 156529791 -25885451 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 4044 20 0 0 chr6 156529794 156530254 -25884988 - L1PA3 LINE L1 -13 6142 5683 481 271 90 18 chr6 156530269 156530435 -25884807 - MIR SINE MIR -50 212 35 503 260 177 17 chr6 156530552 156530902 -25884340 + L1ME4a LINE L1 5612 6017 -104 21 23 0 47 chr6 156531358 156531378 -25883864 + AT_rich Low_complexity Low_complexity 1 20 -21 1293 190 27 17 chr6 156531378 156531673 -25883569 + L1MC1 LINE L1 6030 6327 -6 21 23 0 47 chr6 156531673 156531695 -25883547 + AT_rich Low_complexity Low_complexity 20 41 0 243 274 0 0 chr6 156531772 156531834 -25883408 + (GATTG)n Simple_repeat Simple_repeat 4 65 0 228 191 34 67 chr6 156531919 156532008 -25883234 + L1MC4 LINE L1 6618 6703 -1339 204 344 107 23 chr6 156532032 156532163 -25883079 - L2 LINE L2 -8 3264 3123 213 324 189 38 chr6 156532482 156532634 -25882608 - L2 LINE L2 -436 2878 2750 2136 126 7 0 chr6 156532634 156532944 -25882298 - AluSx SINE Alu 0 312 1 213 324 189 38 chr6 156532944 156533316 -25881926 - L2 LINE L2 -564 2750 2275 208 204 0 41 chr6 156535081 156535130 -25880112 + (AAATG)n Simple_repeat Simple_repeat 4 50 0 26 0 0 0 chr6 156535322 156535348 -25879894 + AT_rich Low_complexity Low_complexity 1 26 0 1983 122 3 10 chr6 156535627 156535921 -25879321 + AluSx SINE Alu 1 292 -20 1351 170 154 6 chr6 156536587 156536905 -25878337 - MLT1A1 LTR MaLR 0 365 1 2424 126 20 0 chr6 156538816 156539173 -25876069 - THE1B LTR MaLR 0 364 1 795 199 0 68 chr6 156539342 156539548 -25875694 + MER58A DNA MER1_type 33 224 0 738 260 94 9 chr6 156539555 156539778 -25875464 - L2 LINE L2 -356 2958 2717 1292 157 173 12 chr6 156539830 156540085 -25875157 + AluJo SINE Alu 11 306 -6 1109 258 39 81 chr6 156540118 156540610 -25874632 - L2 LINE L2 -692 2622 2152 222 225 143 14 chr6 156540671 156540769 -25874473 - MIR SINE MIR -63 145 77 3289 164 38 35 chr6 156540774 156541349 -25873893 + MER50 LTR ERV1 1 580 -154 2308 83 35 0 chr6 156541349 156541639 -25873603 - AluSx SINE Alu -12 300 1 3289 164 38 35 chr6 156541639 156541772 -25873470 + MER50 LTR ERV1 580 711 -23 304 229 0 43 chr6 156543084 156543154 -25872088 + L2 LINE L2 3201 3267 -5 486 0 0 0 chr6 156543796 156543850 -25871392 + (TG)n Simple_repeat Simple_repeat 2 55 0 2000 105 0 0 chr6 156544830 156545096 -25870146 + AluSx SINE Alu 1 266 -46 451 150 12 0 chr6 156545295 156545375 -25869867 + Tigger6 DNA MER2_type 95 175 -1422 23 0 0 0 chr6 156545788 156545811 -25869431 + AT_rich Low_complexity Low_complexity 1 23 0 2290 104 0 0 chr6 156545900 156546197 -25869045 + AluSx SINE Alu 1 297 -15 1640 108 0 9 chr6 156546197 156546419 -25868823 + AluSp SINE Alu 76 296 -17 636 255 51 19 chr6 156546543 156546759 -25868483 + L2 LINE L2 2412 2634 -680 350 325 69 45 chr6 156548537 156548783 -25866459 - MIR SINE MIR -6 256 5 186 194 0 0 chr6 156548955 156548991 -25866251 + MER5A DNA MER1_type 136 171 -18 209 294 178 41 chr6 156549116 156549262 -25865980 + L2 LINE L2 3108 3273 -40 201 161 0 0 chr6 156552007 156552038 -25863204 + (CTG)n Simple_repeat Simple_repeat 1 31 0 302 276 46 23 chr6 156552038 156552094 -25863148 + L1M2 LINE L1 537 625 -6224 198 0 0 0 chr6 156553172 156553194 -25862048 + (TA)n Simple_repeat Simple_repeat 1 22 0 214 186 0 0 chr6 156555001 156555044 -25860198 + (TA)n Simple_repeat Simple_repeat 1 43 0 203 297 171 36 chr6 156557241 156557352 -25857890 + MIR3 SINE MIR 46 171 -37 234 277 106 35 chr6 156557585 156557726 -25857516 - L2 LINE L2 -280 2992 2842 347 277 156 0 chr6 156558329 156558470 -25856772 - MER20B DNA MER1_type -620 163 1 278 296 0 0 chr6 156558477 156558548 -25856694 + MIR SINE MIR 119 189 -73 2265 88 7 0 chr6 156558827 156559123 -25856119 + AluSg SINE Alu 1 298 -12 1203 140 38 45 chr6 156559269 156559533 -25855709 + AluSg SINE Alu 37 298 -12 22 35 0 0 chr6 156559687 156559716 -25855526 + AT_rich Low_complexity Low_complexity 1 29 0 1259 196 107 4 chr6 156559794 156560064 -25855178 - AluJb SINE Alu -9 303 6 383 309 0 0 chr6 156560667 156560764 -25854478 + MIR3 SINE MIR 89 185 -23 916 171 76 0 chr6 156561467 156561625 -25853617 - AluJ SINE Alu -7 305 136 324 0 0 0 chr6 156561639 156561675 -25853567 + (TG)n Simple_repeat Simple_repeat 1 36 0 318 182 91 0 chr6 156561710 156561776 -25853466 - AluJ SINE Alu -168 134 63 833 228 76 19 chr6 156563206 156563417 -25851825 - MER58A DNA MER1_type -1 223 1 1774 166 3 3 chr6 156563572 156563880 -25851362 - AluJb SINE Alu -4 308 1 2293 104 0 0 chr6 156564308 156564615 -25850627 + AluSx SINE Alu 1 307 -5 1411 139 109 18 chr6 156566233 156566507 -25848735 - L1MC1 LINE L1 0 6333 6035 6716 236 48 24 chr6 156566514 156566674 -25848568 - L1MEc LINE L1 -1677 4749 4594 1595 176 37 3 chr6 156566674 156566969 -25848273 - AluJo SINE Alu -5 307 3 6716 236 48 24 chr6 156566969 156569192 -25846050 - L1MEc LINE L1 -1832 4594 2349 10305 160 89 37 chr6 156569309 156571567 -25843675 - L1MEc LINE L1 -4031 2395 21 291 337 61 17 chr6 156571815 156571996 -25843246 + L3b LINE CR1 1121 1309 -274 417 263 5 137 chr6 156572005 156572210 -25843032 - MER5B DNA MER1_type 0 178 1 1844 154 3 7 chr6 156572557 156572862 -25842380 + AluSx SINE Alu 1 304 -8 189 74 0 0 chr6 156572865 156572892 -25842350 + (CTAAA)n Simple_repeat Simple_repeat 4 30 0 181 243 0 0 chr6 156572949 156572986 -25842256 - MIR SINE MIR -120 142 106 185 310 0 17 chr6 156574296 156574354 -25840888 - MIR3 SINE MIR -11 197 141 1403 154 82 32 chr6 156574447 156574727 -25840515 + AluJo SINE Alu 4 297 -15 373 264 126 46 chr6 156575705 156575944 -25839298 - HAL1 LINE L1 -22 2485 2228 408 291 87 6 chr6 156576486 156576559 -25838683 - HAL1 LINE L1 -698 1809 1743 231 88 0 0 chr6 156576559 156576593 -25838649 + (TG)n Simple_repeat Simple_repeat 1 34 0 408 291 87 6 chr6 156576593 156576691 -25838551 - HAL1 LINE L1 -764 1743 1624 334 291 135 29 chr6 156576856 156577100 -25838142 - HAL1 LINE L1 -1098 1409 1140 2663 221 62 20 chr6 156577790 156578570 -25836672 - L1M4 LINE L1 -1488 4658 3847 873 236 45 35 chr6 156578887 156579200 -25836042 - L1M4 LINE L1 -1984 4162 3847 22 0 0 0 chr6 156579416 156579438 -25835804 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr6 156579704 156579731 -25835511 + (TG)n Simple_repeat Simple_repeat 2 28 0 609 299 139 0 chr6 156579772 156579973 -25835269 + MIR SINE MIR 28 256 -6 282 95 0 0 chr6 156579976 156580018 -25835224 + (ATGGTG)n Simple_repeat Simple_repeat 4 45 0 267 310 93 31 chr6 156581102 156581231 -25834011 - MIR SINE MIR -74 188 52 239 133 22 0 chr6 156581288 156581333 -25833909 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 387 307 104 12 chr6 156581638 156581801 -25833441 + MIR SINE MIR 85 262 0 549 88 0 0 chr6 156582867 156582947 -25832295 + (CTA)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr6 156583004 156583030 -25832212 + AT_rich Low_complexity Low_complexity 1 26 0 269 203 34 0 chr6 156583345 156583404 -25831838 + MIR SINE MIR 191 251 -11 609 301 56 8 chr6 156583441 156583690 -25831552 + MIR SINE MIR 2 262 0 22 0 0 0 chr6 156584670 156584692 -25830550 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 156585352 156585374 -25829868 + AT_rich Low_complexity Low_complexity 1 22 0 897 204 58 80 chr6 156585423 156585823 -25829419 - L1MD2 LINE L1 -4 6355 5952 2010 145 3 0 chr6 156585823 156586120 -25829122 - AluSg SINE Alu -12 298 1 182 361 216 10 chr6 156586747 156586941 -25828301 - L3b LINE CR1 -8 1575 1342 195 296 32 88 chr6 156587080 156587134 -25828108 - MER5B DNA MER1_type -25 153 98 1367 172 126 63 chr6 156587134 156587564 -25827678 - MSTB2 LTR MaLR 0 457 1 195 296 32 88 chr6 156587564 156587634 -25827608 - MER5B DNA MER1_type -80 98 36 752 284 58 16 chr6 156588574 156588887 -25826355 - L1MC4a LINE L1 -1870 5938 5613 2171 108 3 0 chr6 156588989 156589286 -25825956 - AluSx SINE Alu -14 298 1 211 213 21 0 chr6 156589417 156589464 -25825778 + (TATG)n Simple_repeat Simple_repeat 3 50 0 1857 152 60 58 chr6 156590144 156590558 -25824684 - L1MC2 LINE L1 -8 6730 6316 691 219 8 0 chr6 156590561 156590689 -25824553 + Tigger3b DNA MER2_type 2 130 -1101 6260 130 54 25 chr6 156590776 156591887 -25823355 + Tigger3b DNA MER2_type 89 1231 0 2879 197 47 33 chr6 156591889 156593033 -25822209 - L1MC2 LINE L1 -743 5797 5168 1085 196 21 1 chr6 156593033 156593331 -25821911 - MER2 DNA MER2_type 0 345 1 748 230 11 0 chr6 156593331 156593509 -25821733 - L1MC2 LINE L1 -1377 5163 4984 310 289 20 34 chr6 156593552 156593701 -25821541 + MER104 DNA Tc2 31 177 -3 545 283 39 13 chr6 156593797 156594030 -25821212 - L1MC2 LINE L1 -4667 1873 1635 1189 110 23 0 chr6 156594032 156594205 -25821037 - AluSg/x SINE Alu -7 305 129 468 118 11 54 chr6 156594212 156594305 -25820937 - MLT1B LTR MaLR -293 97 9 1802 218 54 11 chr6 156594627 156595068 -25820174 + MLT1C LTR MaLR 1 460 -7 2077 114 0 20 chr6 156597036 156597342 -25817900 + AluSx SINE Alu 1 300 -12 446 250 294 5 chr6 156597517 156597701 -25817541 + L1ME LINE L1 5404 5640 -530 2084 213 71 35 chr6 156597711 156598313 -25816929 + MLT1E3 LTR MaLR 1 624 0 654 247 7 0 chr6 156598324 156598470 -25816772 + MLT1E3-int LTR MaLR 4 150 -1221 863 226 64 45 chr6 156598497 156598825 -25816417 + MLT1E3-int LTR MaLR 307 664 -707 743 322 39 46 chr6 156598957 156599373 -25815869 + MLT1E3-int LTR MaLR 697 1109 -262 1183 164 8 2 chr6 156599374 156599647 -25815595 - MER2 DNA MER2_type 0 345 9 850 114 0 0 chr6 156599915 156600038 -25815204 + AluSp/q SINE Alu 189 311 -2 7494 117 32 38 chr6 156600047 156601573 -25813669 + L1P3 LINE L1 22 1447 -4699 5946 65 16 40 chr6 156601677 156602730 -25812512 + L1PA7 LINE L1 5023 6063 -91 213 39 0 0 chr6 156602854 156602880 -25812362 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1171 160 19 92 chr6 156602901 156603163 -25812079 - AluJb SINE Alu -69 243 1 225 197 33 33 chr6 156603322 156603383 -25811859 - LTR33A LTR ERVL -14 509 449 191 321 83 0 chr6 156603926 156604010 -25811232 - L2 LINE L2 -559 2755 2665 225 342 0 40 chr6 156604136 156604212 -25811030 - L2 LINE L2 -6 3266 3194 21 0 0 0 chr6 156604702 156604723 -25810519 + AT_rich Low_complexity Low_complexity 1 21 0 415 272 121 28 chr6 156605132 156605422 -25809820 - MLT1H LTR MaLR -4 545 229 2296 74 7 7 chr6 156605779 156606088 -25809154 - AluY SINE Alu -2 309 1 41 48 0 0 chr6 156606138 156606200 -25809042 + AT_rich Low_complexity Low_complexity 1 62 0 29 0 0 0 chr6 156606456 156606485 -25808757 + AT_rich Low_complexity Low_complexity 1 29 0 251 314 70 46 chr6 156607661 156607771 -25807471 - MIR SINE MIR -88 120 6 222 262 16 0 chr6 156608288 156608349 -25806893 + (TA)n Simple_repeat Simple_repeat 1 62 0 248 204 20 0 chr6 156608448 156608497 -25806745 + MER112 DNA MER1_type 210 259 -1 32 86 0 0 chr6 156608548 156608629 -25806613 + AT_rich Low_complexity Low_complexity 1 81 0 22 56 0 0 chr6 156609539 156609575 -25805667 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr6 156609713 156609742 -25805500 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 156610160 156610189 -25805053 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr6 156610228 156610271 -25804971 + AT_rich Low_complexity Low_complexity 1 43 0 670 177 20 68 chr6 156610698 156610845 -25804397 - FLAM_C SINE Alu -1 142 3 208 421 53 0 chr6 156611022 156611155 -25804087 + L2 LINE L2 2914 3053 -219 33 25 0 0 chr6 156611423 156611463 -25803779 + AT_rich Low_complexity Low_complexity 1 40 0 378 340 68 10 chr6 156611672 156611913 -25803329 - MIR SINE MIR -3 259 12 21 0 0 0 chr6 156612125 156612146 -25803096 + AT_rich Low_complexity Low_complexity 1 21 0 375 342 141 7 chr6 156612233 156612382 -25802860 - MIR3 SINE MIR -14 194 26 261 324 0 0 chr6 156612754 156612828 -25802414 - L2 LINE L2 -6 3307 3234 220 314 69 74 chr6 156612847 156613022 -25802220 - L2 LINE L2 -189 3083 2910 759 339 133 29 chr6 156613292 156614118 -25801124 - L2 LINE L2 -182 3090 2194 1331 227 62 78 chr6 156614882 156615560 -25799682 - L1MC5 LINE L1 -419 7542 6876 5283 278 80 28 chr6 156616091 156617472 -25797770 + L1MEc LINE L1 56 1604 -4792 2279 77 13 3 chr6 156617472 156617771 -25797471 + AluY SINE Alu 1 302 -9 5283 278 80 28 chr6 156617771 156618690 -25796552 + L1MEc LINE L1 1604 2474 -3922 2647 254 92 18 chr6 156618686 156619688 -25795554 + L1MEc LINE L1 2722 3797 -2418 * 1356 187 3 76 chr6 156620425 156620740 -25794502 + AluJo SINE Alu 1 292 -20 1388 190 0 76 chr6 156621239 156621555 -25793687 + AluJo SINE Alu 1 292 -20 2307 64 7 3 chr6 156621852 156622147 -25793095 + AluY SINE Alu 2 297 -14 225 0 0 0 chr6 156622430 156622455 -25792787 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 281 170 0 0 chr6 156622455 156622502 -25792740 - AluSq SINE Alu -15 285 239 32 26 0 0 chr6 156623022 156623061 -25792181 + AT_rich Low_complexity Low_complexity 1 39 0 2423 68 3 3 chr6 156623728 156624035 -25791207 - AluY SINE Alu -4 307 1 27 0 0 0 chr6 156624587 156624614 -25790628 + AT_rich Low_complexity Low_complexity 1 27 0 273 158 0 70 chr6 156624964 156625021 -25790221 + Tigger5 DNA MER2_type 1 53 -2270 248 206 127 16 chr6 156624989 156625052 -25790190 + Tigger5 DNA MER2_type 2249 2318 -5 * 465 239 0 0 chr6 156625073 156625161 -25790081 - Tigger5 DNA MER2_type -2235 88 1 546 184 0 0 chr6 156625172 156625259 -25789983 + Tigger5 DNA MER2_type 2237 2323 0 2764 216 22 2 chr6 156626807 156627357 -25787885 - MER68 LTR ERV1 -1 561 1 24 0 0 0 chr6 156627382 156627406 -25787836 + AT_rich Low_complexity Low_complexity 1 24 0 253 312 9 18 chr6 156628175 156628284 -25786958 - L1MC4 LINE L1 -140 7902 7795 1298 236 31 78 chr6 156628314 156628826 -25786416 - L1MC4 LINE L1 -391 7651 7164 23 0 0 0 chr6 156628948 156628971 -25786271 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 156629122 156629144 -25786098 + AT_rich Low_complexity Low_complexity 1 22 0 2013 89 0 4 chr6 156629279 156629537 -25785705 - AluSq SINE Alu -56 257 1 454 315 12 37 chr6 156630006 156630168 -25785074 + MIR SINE MIR 28 185 -77 253 222 32 0 chr6 156630170 156630233 -25785009 - L2 LINE L2 0 3313 3249 242 302 135 40 chr6 156630565 156630691 -25784551 + MIR3 SINE MIR 33 170 -38 1213 130 82 0 chr6 156631085 156631269 -25783973 + MER30 DNA MER1_type 32 230 0 1171 168 90 4 chr6 156632107 156632363 -25782879 - MER33 DNA MER1_type 0 324 47 197 370 259 0 chr6 156632555 156632690 -25782552 - L2 LINE L2 -1 3271 3102 254 361 158 24 chr6 156632829 156633239 -25782003 - L2 LINE L2 -342 2972 2508 379 259 111 69 chr6 156633678 156633940 -25781302 + HAL1b LINE L1 275 547 -801 24 0 0 0 chr6 156634554 156634578 -25780664 + AT_rich Low_complexity Low_complexity 1 24 0 302 203 40 3 chr6 156634635 156634719 -25780523 + L1MA10 LINE L1 6083 6326 -5 1003 95 0 0 chr6 156635200 156635337 -25779905 - L1MA1 LINE L1 -4 6298 6162 486 34 0 114 chr6 156635338 156635374 -25779868 + L1MA1 LINE L1 6093 6131 -171 2791 7 0 0 chr6 156635374 156635681 -25779561 - AluYa5 SINE Alu -4 307 1 486 34 0 114 chr6 156635681 156635732 -25779510 + L1MA1 LINE L1 6131 6170 -132 351 337 50 36 chr6 156635788 156636137 -25779105 - L1ME LINE L1 -336 5826 5467 * 624 280 141 70 chr6 156636126 156636794 -25778448 - L1M4 LINE L1 -5800 742 28 1998 219 150 20 chr6 156636796 156637435 -25777807 - MER50 LTR ERV1 0 734 13 287 235 113 26 chr6 156637889 156638004 -25777238 + L1ME4a LINE L1 5446 5570 -551 370 236 27 116 chr6 156638022 156638098 -25777144 - L2 LINE L2 -33 3280 3199 1594 176 7 33 chr6 156638098 156638405 -25776837 + AluJb SINE Alu 1 299 -13 370 236 27 116 chr6 156638405 156638553 -25776689 - L2 LINE L2 -114 3199 3076 289 194 140 11 chr6 156638607 156638700 -25776542 + L1ME4a LINE L1 5993 6097 -24 975 181 39 0 chr6 156640089 156640271 -25774971 + MER5A DNA MER1_type 1 189 0 431 247 95 25 chr6 156640538 156640696 -25774546 + MIR SINE MIR 82 250 -12 1811 186 49 6 chr6 156641118 156641446 -25773796 + MER7A DNA MER2_type 1 340 -6 783 278 78 0 chr6 156642402 156642607 -25772635 + MIR SINE MIR 2 222 -40 675 270 66 0 chr6 156642899 156643110 -25772132 - MER112 DNA MER1_type -35 225 1 616 236 144 36 chr6 156643132 156643327 -25771915 + MIR SINE MIR 32 247 -15 1986 249 57 40 chr6 156643586 156644286 -25770956 + L1M2 LINE L1 179 1084 -6125 * 5709 216 51 54 chr6 156644283 156647948 -25767294 + L1M2 LINE L1 1553 4879 -2329 5836 172 35 14 chr6 156647954 156649533 -25765709 + L1M2 LINE L1 5152 6761 -601 1611 147 4 12 chr6 156650715 156650974 -25764268 + AluSg SINE Alu 1 257 -53 2471 113 36 0 chr6 156651343 156651705 -25763537 + THE1C LTR MaLR 1 375 0 6903 153 39 48 chr6 156651705 156653108 -25762134 + THE1C-int LTR MaLR 1 1390 -190 251 269 139 0 chr6 156653261 156653369 -25761873 + MER5C DNA MER1_type 2 124 -200 201 272 130 0 chr6 156653397 156653489 -25761753 + MER5C DNA MER1_type 221 324 0 257 364 8 38 chr6 156654530 156654662 -25760580 - L2 LINE L2 -182 3090 2963 258 270 112 74 chr6 156654766 156655062 -25760180 + L2 LINE L2 2804 3110 -162 798 230 70 19 chr6 156656637 156656850 -25758392 - L2 LINE L2 0 3313 3090 226 194 41 51 chr6 156656938 156657036 -25758206 - Charlie7 DNA MER1_type -2460 152 56 518 282 19 26 chr6 156657151 156657307 -25757935 - MIR SINE MIR -96 166 12 541 247 62 0 chr6 156657785 156657931 -25757311 - MER105 DNA DNA -49 155 1 1855 174 73 53 chr6 156658663 156658712 -25756530 - MLT2C2 LTR ERVL 0 464 417 336 24 0 0 chr6 156658712 156658753 -25756489 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 1855 174 73 53 chr6 156658753 156659156 -25756086 - MLT2C2 LTR ERVL -47 417 3 236 289 87 19 chr6 156659774 156659878 -25755364 + L2 LINE L2 2198 2308 -1006 231 256 26 0 chr6 156659882 156659960 -25755282 - MER116 DNA Mariner 0 80 1 789 212 63 26 chr6 156660666 156660855 -25754387 + MER20 DNA MER1_type 24 219 0 343 284 162 14 chr6 156661714 156661862 -25753380 + MIR SINE MIR 66 235 -27 24 53 0 0 chr6 156661929 156661967 -25753275 + AT_rich Low_complexity Low_complexity 1 38 0 270 0 0 0 chr6 156662368 156662398 -25752844 + (CA)n Simple_repeat Simple_repeat 2 31 0 929 223 58 5 chr6 156665599 156665805 -25749437 + MER20 DNA MER1_type 3 219 0 316 300 69 8 chr6 156667125 156667255 -25747987 - L1MC4a LINE L1 -905 6903 6766 21 36 0 0 chr6 156667430 156667458 -25747784 + AT_rich Low_complexity Low_complexity 1 28 0 1834 142 23 13 chr6 156668012 156668321 -25746921 - AluJb SINE Alu 0 312 1 414 0 0 0 chr6 156668738 156668784 -25746458 + (TG)n Simple_repeat Simple_repeat 2 47 0 1010 194 89 32 chr6 156669538 156669786 -25745456 + AluJo SINE Alu 44 305 -7 182 184 105 0 chr6 156671325 156671363 -25743879 - L2 LINE L2 -4 3309 3268 2163 106 0 3 chr6 156671579 156671881 -25743361 - AluSx SINE Alu -11 301 1 255 297 10 10 chr6 156672467 156672568 -25742674 - AluSp/q SINE Alu 0 303 203 2366 88 10 0 chr6 156673201 156673506 -25741736 - AluSq SINE Alu -5 308 1 279 315 0 11 chr6 156673583 156673675 -25741567 + CT-rich Low_complexity Low_complexity 1 91 0 1109 224 114 10 chr6 156674769 156675059 -25740183 - MER2 DNA MER2_type -25 320 1 374 327 121 12 chr6 156675235 156675483 -25739759 + MER102b DNA MER1_type 25 299 -42 1720 169 28 3 chr6 156676388 156676678 -25738564 - AluJb SINE Alu -15 297 1 22 35 0 0 chr6 156676765 156676794 -25738448 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 156678132 156678157 -25737085 + AT_rich Low_complexity Low_complexity 1 25 0 206 117 17 67 chr6 156678157 156678217 -25737025 + T-rich Low_complexity Low_complexity 4 60 0 31 44 0 0 chr6 156678325 156678370 -25736872 + AT_rich Low_complexity Low_complexity 1 45 0 27 29 0 0 chr6 156678403 156678437 -25736805 + AT_rich Low_complexity Low_complexity 1 34 0 2607 29 0 7 chr6 156678554 156678863 -25736379 - AluY SINE Alu -4 307 1 561 337 51 69 chr6 156679508 156679762 -25735480 + L3 LINE CR1 279 536 -1041 821 257 57 5 chr6 156679762 156679972 -25735270 + MER58A DNA MER1_type 1 221 -3 561 337 51 69 chr6 156679972 156680323 -25734919 + L3 LINE CR1 536 873 -704 355 308 115 0 chr6 156680362 156680492 -25734750 + MIR SINE MIR 48 192 -70 196 316 18 0 chr6 156680561 156680618 -25734624 + L3 LINE CR1 921 978 -599 198 0 0 0 chr6 156680742 156680764 -25734478 + (A)n Simple_repeat Simple_repeat 1 22 0 618 183 80 0 chr6 156680840 156680980 -25734262 + MIR SINE MIR 104 257 -5 208 345 0 64 chr6 156681006 156681116 -25734126 + L3 LINE CR1 1449 1551 -26 675 246 103 87 chr6 156681126 156681687 -25733555 - L2 LINE L2 0 3313 2732 2062 120 0 7 chr6 156682175 156682476 -25732766 + AluSx SINE Alu 1 299 -13 1295 57 11 6 chr6 156684581 156684758 -25730484 + AluY SINE Alu 128 305 -6 21 0 0 0 chr6 156685196 156685217 -25730025 + AT_rich Low_complexity Low_complexity 1 21 0 240 86 0 0 chr6 156686116 156686151 -25729091 + (CA)n Simple_repeat Simple_repeat 2 36 0 263 353 75 23 chr6 156687071 156687204 -25728038 - L2 LINE L2 -1 3271 3132 222 146 21 0 chr6 156690590 156690638 -25724604 + (TG)n Simple_repeat Simple_repeat 1 49 0 646 259 86 9 chr6 156690780 156691000 -25724242 - MIR SINE MIR -25 237 1 23 0 0 0 chr6 156691663 156691686 -25723556 + AT_rich Low_complexity Low_complexity 1 23 0 466 326 98 37 chr6 156691721 156692049 -25723193 + L3 LINE CR1 457 804 -773 189 299 13 39 chr6 156692046 156692123 -25723119 - MIR SINE MIR 0 262 188 * 375 326 124 6 chr6 156692349 156692513 -25722729 - MIR3 SINE MIR -44 218 37 26 0 0 0 chr6 156693068 156693094 -25722148 + AT_rich Low_complexity Low_complexity 1 26 0 1581 179 92 41 chr6 156693368 156693737 -25721505 - MLT1B LTR MaLR -2 388 1 2009 107 14 7 chr6 156695392 156695683 -25719559 + AluSx SINE Alu 1 293 -19 387 274 13 20 chr6 156695726 156695879 -25719363 + L1MEc LINE L1 73 224 -6172 424 239 129 6 chr6 156696053 156696216 -25719026 + L1M4 LINE L1 2998 3180 -2966 1453 244 108 14 chr6 156696249 156696741 -25718501 + HAL1b LINE L1 526 1063 -285 370 242 94 0 chr6 156696816 156696965 -25718277 + HAL1b LINE L1 1186 1348 0 182 108 54 0 chr6 156697267 156697304 -25717938 + CT-rich Low_complexity Low_complexity 2 40 0 282 264 113 0 chr6 156697614 156697720 -25717522 + L1ME4a LINE L1 5630 5747 -374 291 193 156 18 chr6 156697741 156697850 -25717392 + L1ME4a LINE L1 5803 5926 -195 767 249 46 43 chr6 156698127 156698432 -25716810 + L1ME2 LINE L1 5849 6154 -10 189 196 0 87 chr6 156698684 156698730 -25716512 + L2 LINE L2 3227 3268 -4 23 54 0 0 chr6 156699131 156699168 -25716074 + AT_rich Low_complexity Low_complexity 1 37 0 632 266 133 18 chr6 156699711 156699937 -25715305 - MIR SINE MIR -3 259 8 536 175 148 17 chr6 156700062 156700220 -25715022 + MER5A DNA MER1_type 4 186 -3 1583 142 94 11 chr6 156701289 156701564 -25713678 + AluSx SINE Alu 1 298 -14 1586 143 82 11 chr6 156701818 156702098 -25713144 + AluJb SINE Alu 1 300 -12 26 64 0 0 chr6 156702652 156702699 -25712543 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr6 156703587 156703616 -25711626 + AT_rich Low_complexity Low_complexity 1 29 0 715 267 112 0 chr6 156704513 156704743 -25710499 + MIR SINE MIR 7 259 -3 344 317 80 106 chr6 156705919 156706370 -25708872 - L2 LINE L2 -9 3263 2825 2257 141 73 27 chr6 156707470 156707881 -25707361 - Tigger2a DNA MER2_type -3 431 2 3598 24 5 0 chr6 156708397 156708820 -25706422 - L1PA3 LINE L1 0 6155 5731 4196 25 0 0 chr6 156708820 156709341 -25705901 + L1PA3 LINE L1 5230 5750 -405 499 222 48 24 chr6 156710029 156710196 -25705046 + L1ME4a LINE L1 5950 6120 -1 665 118 62 75 chr6 156710920 156711081 -25704161 + MER53 DNA DNA 1 159 -30 969 185 50 66 chr6 156711578 156711880 -25703362 - MER33 DNA MER1_type 0 324 28 541 287 96 30 chr6 156713837 156714067 -25701175 + MIR SINE MIR 18 262 0 1302 268 110 18 chr6 156714799 156715291 -25699951 + L1ME1 LINE L1 43 579 -5817 625 282 45 20 chr6 156715308 156715739 -25699503 - MLT1D LTR MaLR -34 471 2 1362 222 130 9 chr6 156715749 156716181 -25699061 + L1ME1 LINE L1 660 1143 -5253 3728 249 100 20 chr6 156716186 156716292 -25698950 + L1ME1 LINE L1 3054 3150 -3065 2410 73 0 0 chr6 156716292 156716593 -25698649 + AluY SINE Alu 1 301 -10 3728 249 100 20 chr6 156716593 156717872 -25697370 + L1ME1 LINE L1 3150 4550 -1665 2660 224 83 7 chr6 156717903 156719174 -25696068 + L1ME1 LINE L1 4686 6059 -176 744 199 19 6 chr6 156719202 156719363 -25695879 + L1MA10 LINE L1 6169 6331 -3 462 304 46 26 chr6 156720408 156720602 -25694640 - MIR SINE MIR -43 219 22 2340 80 20 0 chr6 156721337 156721666 -25693576 - AluSg SINE Alu 0 337 3 1904 127 30 7 chr6 156722024 156722324 -25692918 + AluSx SINE Alu 1 307 -5 436 270 54 106 chr6 156723926 156724742 -25690500 + L1MEd LINE L1 655 1473 -4870 297 263 77 75 chr6 156725297 156725485 -25689757 + L1MEd LINE L1 2143 2275 -3940 1590 175 22 4 chr6 156725485 156725753 -25689489 + AluJo SINE Alu 16 288 -24 297 263 77 75 chr6 156725753 156725916 -25689326 + L1MEd LINE L1 2275 2436 -3779 275 273 60 47 chr6 156726045 156726195 -25689047 + L1MEd LINE L1 2819 2970 -3245 259 278 43 31 chr6 156726206 156726368 -25688874 + L1MEd LINE L1 3040 3203 -3012 1411 172 80 25 chr6 156726400 156726725 -25688517 - MLT1A1 LTR MaLR 0 365 23 784 292 119 17 chr6 156726755 156727351 -25687891 + L1MEd LINE L1 3256 3912 -2303 229 322 92 17 chr6 156727440 156727735 -25687507 + L1MEd LINE L1 4119 4435 -1780 1832 206 76 49 chr6 156727756 156728242 -25687000 - MLT1D LTR MaLR -5 500 2 5061 199 32 20 chr6 156728536 156729104 -25686138 + L1MB7 LINE L1 4096 4656 -1528 336 48 0 0 chr6 156729104 156729146 -25686096 + (CA)n Simple_repeat Simple_repeat 1 42 0 5061 199 32 20 chr6 156729146 156729793 -25685449 + L1MB7 LINE L1 4656 5294 -890 2478 104 14 16 chr6 156729793 156730158 -25685084 - THE1B LTR MaLR 0 364 1 5061 199 32 20 chr6 156730158 156730988 -25684254 + L1MB7 LINE L1 5294 6168 -16 541 312 127 0 chr6 156733070 156733291 -25681951 + MIR SINE MIR 1 249 -13 21 0 0 0 chr6 156735989 156736010 -25679232 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr6 156737732 156737769 -25677473 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr6 156738752 156738790 -25676452 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr6 156739277 156739309 -25675933 + AT_rich Low_complexity Low_complexity 1 32 0 516 270 171 0 chr6 156739674 156739826 -25675416 - MER5A DNA MER1_type -3 186 9 396 0 0 0 chr6 156740953 156740997 -25674245 + (TG)n Simple_repeat Simple_repeat 2 45 0 1642 180 7 23 chr6 156741444 156741744 -25673498 - AluJo SINE Alu -17 295 1 791 177 38 43 chr6 156741887 156742073 -25673169 - MER5A DNA MER1_type 0 189 5 578 183 74 29 chr6 156742127 156742302 -25672940 - MER20B DNA MER1_type -56 727 545 298 285 67 88 chr6 156742943 156743136 -25672106 + MIR SINE MIR 44 232 -30 1960 120 36 60 chr6 156743517 156743901 -25671341 - THE1C LTR MaLR 0 375 1 182 233 93 0 chr6 156744129 156744172 -25671070 + MIR SINE MIR 68 114 -148 25 0 0 0 chr6 156744172 156744197 -25671045 + AT_rich Low_complexity Low_complexity 1 25 0 362 242 258 0 chr6 156744397 156744517 -25670725 + MIR SINE MIR 82 232 -30 276 248 154 20 chr6 156744521 156744670 -25670572 - MER104 DNA Tc2 -4 176 8 182 188 0 0 chr6 156744675 156744707 -25670535 + MIR SINE MIR 231 262 0 304 327 142 0 chr6 156745611 156745724 -25669518 - L2 LINE L2 -5 3308 3180 378 340 88 61 chr6 156746248 156746610 -25668632 + L2 LINE L2 2891 3262 -10 913 279 60 68 chr6 156747727 156748227 -25667015 + L2 LINE L2 2763 3308 -5 284 275 27 81 chr6 156748282 156748431 -25666811 + MIR SINE MIR 72 212 -50 237 321 89 0 chr6 156748462 156748574 -25666668 + MIR3 SINE MIR 86 207 -1 1608 148 55 81 chr6 156748602 156748644 -25666598 - THE1C LTR MaLR 0 375 333 2108 125 0 0 chr6 156748644 156748933 -25666309 + AluSx SINE Alu 1 289 -23 1608 148 55 81 chr6 156748933 156749275 -25665967 - THE1C LTR MaLR -42 333 1 9035 114 75 33 chr6 156749275 156750791 -25664451 - THE1C-int LTR MaLR 0 1580 1 1709 157 33 33 chr6 156750811 156751148 -25664094 - THE1C LTR MaLR -38 337 1 454 114 0 14 chr6 156751148 156751217 -25664025 + MSTA LTR MaLR 361 428 0 14144 177 20 13 chr6 156751218 156753509 -25661733 - L1MA3 LINE L1 -305 6000 3669 186 43 0 0 chr6 156753509 156753532 -25661710 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 14144 177 20 13 chr6 156753532 156754807 -25660435 - L1MA3 LINE L1 -2636 3669 2405 505 271 12 0 chr6 156754789 156754955 -25660287 + L1MCa LINE L1 1352 1519 -4904 * 267 247 13 0 chr6 156754958 156755035 -25660207 + L1MCc LINE L1 2926 3003 -3940 1807 119 3 34 chr6 156755044 156755382 -25659860 + AluSx SINE Alu 1 329 0 2289 89 0 49 chr6 156758140 156758464 -25656778 - AluSc SINE Alu -1 308 1 560 207 93 7 chr6 156760284 156760434 -25654808 + L1MB7 LINE L1 6006 6168 -16 5954 130 43 44 chr6 156760442 156762123 -25653119 + L1MA9 LINE L1 4644 6312 0 599 214 13 7 chr6 156762118 156762272 -25652970 + L1MCa LINE L1 1548 1702 -5239 * 423 263 88 40 chr6 156762280 156762464 -25652778 + L1MCa LINE L1 2349 2548 -4574 2211 115 0 0 chr6 156762464 156762759 -25652483 + AluSx SINE Alu 15 309 -3 423 263 88 40 chr6 156762759 156762802 -25652440 + L1MCa LINE L1 2548 2587 -4535 246 298 12 12 chr6 156762807 156762891 -25652351 + L1MDb LINE L1 12 95 -6314 310 259 75 129 chr6 156763648 156763926 -25651316 + L1MDb LINE L1 800 1039 -5370 1932 152 14 3 chr6 156763926 156764216 -25651026 + AluJo SINE Alu 1 293 -19 310 259 75 129 chr6 156764216 156764458 -25650784 + L1MDb LINE L1 1039 1292 -5117 * 2356 252 20 13 chr6 156764426 156765116 -25650126 + L1MDb LINE L1 2572 3266 -3140 518 250 0 0 chr6 156765107 156765223 -25650019 + L1MDb LINE L1 3876 3991 -2415 * 483 289 13 13 chr6 156765638 156765790 -25649452 - MIR SINE MIR -10 252 101 201 330 37 26 chr6 156768001 156768125 -25647117 - MIR SINE MIR -85 123 3 205 222 22 0 chr6 156768259 156768304 -25646938 - L3b LINE CR1 0 1583 1538 5851 55 12 23 chr6 156768406 156769027 -25646215 + L1PA8 LINE L1 5443 6056 -116 2057 117 39 0 chr6 156769027 156769309 -25645933 + AluSp SINE Alu 1 293 -20 5851 55 12 23 chr6 156769309 156769420 -25645822 + L1PA8 LINE L1 6056 6167 -5 344 297 122 54 chr6 156769482 156769909 -25645333 + L2 LINE L2 18 473 -2841 482 300 124 39 chr6 156769913 156770323 -25644919 + L2 LINE L2 1390 1834 -1480 994 82 0 0 chr6 156770349 156770483 -25644759 + AluY SINE Alu 178 311 0 2285 70 37 0 chr6 156770495 156770795 -25644447 + AluY SINE Alu 1 311 0 434 258 376 0 chr6 156770795 156771074 -25644168 + L2 LINE L2 1879 2262 -1052 700 128 9 0 chr6 156771148 156771257 -25643985 + L1MB5 LINE L1 6057 6166 -8 3704 194 107 54 chr6 156771317 156772341 -25642901 + LTR28 LTR ERV1 1 1702 -53 647 345 76 14 chr6 156772546 156772821 -25642421 + L2 LINE L2 2639 2930 -384 478 311 20 20 chr6 156772822 156772973 -25642269 + L2 LINE L2 3163 3313 0 21 0 0 0 chr6 156773281 156773302 -25641940 + AT_rich Low_complexity Low_complexity 1 21 0 2094 131 10 10 chr6 156773350 156773648 -25641594 + AluSx SINE Alu 1 298 -14 7354 56 26 3 chr6 156773823 156775379 -25639863 - L1PA8 LINE L1 -2 6170 4632 807 186 43 52 chr6 156775392 156775602 -25639640 + L1MB8 LINE L1 5971 6178 0 319 316 36 64 chr6 156775628 156775878 -25639364 + L1MC/D LINE L1 5301 5543 -2265 460 273 7 28 chr6 156775880 156776023 -25639219 + MLT1H1 LTR MaLR 54 193 -362 398 303 18 69 chr6 156776099 156776317 -25638925 + MLT1H1 LTR MaLR 389 595 0 285 192 41 14 chr6 156776714 156776787 -25638455 - HsTC2 DNA Tc2 -1823 75 1 396 0 0 0 chr6 156776934 156776978 -25638264 + (CA)n Simple_repeat Simple_repeat 1 44 0 191 325 24 59 chr6 156777704 156777873 -25637369 + MIR SINE MIR 28 190 -72 2466 83 0 0 chr6 156777950 156778251 -25636991 - AluSg SINE Alu -9 301 1 413 289 92 6 chr6 156778268 156778441 -25636801 + MIR3 SINE MIR 4 191 -17 384 125 0 0 chr6 156778448 156778504 -25636738 - MADE1 DNA Mariner -24 56 1 1671 207 187 7 chr6 156779258 156779657 -25635585 + MLT2B1 LTR ERVL 1 485 -35 186 118 0 0 chr6 156779657 156779691 -25635551 + (TA)n Simple_repeat Simple_repeat 1 34 0 1671 207 187 7 chr6 156779691 156779725 -25635517 + MLT2B1 LTR ERVL 485 512 -8 443 259 24 47 chr6 156779797 156779967 -25635275 - MIR SINE MIR -7 255 90 275 280 89 83 chr6 156780102 156780270 -25634972 - MER5B DNA MER1_type -6 172 4 1163 200 0 5 chr6 156780301 156780491 -25634751 - MER5A DNA MER1_type 0 189 1 2308 88 20 10 chr6 156781306 156781612 -25633630 - AluSp SINE Alu -2 311 3 717 184 0 0 chr6 156782815 156782924 -25632318 - AluSg/x SINE Alu -27 285 177 1426 208 70 47 chr6 156784775 156785159 -25630083 + MSTD LTR MaLR 1 393 -3 212 229 38 38 chr6 156785469 156785574 -25629668 + A-rich Low_complexity Low_complexity 1 105 0 1861 157 0 10 chr6 156785620 156785914 -25629328 + AluSx SINE Alu 1 291 -21 1472 169 88 11 chr6 156786013 156786297 -25628945 - AluSq SINE Alu -7 306 1 1744 106 0 0 chr6 156786319 156786545 -25628697 - AluSq SINE Alu -87 226 1 2029 145 0 0 chr6 156787476 156787772 -25627470 - AluSx SINE Alu -16 296 1 2745 103 19 8 chr6 156788812 156789181 -25626061 - THE1C LTR MaLR -2 373 1 262 269 93 9 chr6 156789324 156789432 -25625810 + L2 LINE L2 100 216 -3098 312 240 27 33 chr6 156789492 156789508 -25625734 + (CA)n Simple_repeat Simple_repeat 2 17 -133 2189 170 14 14 chr6 156789508 156789873 -25625369 - MLT1A1 LTR MaLR 0 365 1 312 240 27 33 chr6 156789873 156790006 -25625236 + (CA)n Simple_repeat Simple_repeat 17 150 0 520 276 72 17 chr6 156790017 156790198 -25625044 + MER112 DNA MER1_type 64 254 -6 693 303 92 18 chr6 156790251 156790588 -25624654 + L2 LINE L2 332 693 -2621 194 361 21 0 chr6 156791090 156791187 -25624055 - MIR SINE MIR -34 228 130 2319 104 0 0 chr6 156791661 156791959 -25623283 - AluSx SINE Alu -14 298 1 1348 213 76 48 chr6 156792045 156792402 -25622840 + MLT1A2 LTR MaLR 6 372 -2 180 351 40 47 chr6 156792403 156792551 -25622691 - MIR3 SINE MIR -15 193 47 2205 115 3 0 chr6 156792662 156792967 -25622275 + AluSq SINE Alu 3 308 -5 4115 201 100 67 chr6 156794280 156794436 -25620806 + L1MC4 LINE L1 6519 6668 -1374 502 103 13 13 chr6 156794436 156794514 -25620728 + MADE1 DNA Mariner 1 78 -2 4115 201 100 67 chr6 156794514 156795766 -25619476 + L1MC4 LINE L1 6668 8035 -7 2798 154 86 57 chr6 156796939 156797085 -25618157 + LTR8A LTR ERV1 1 141 -586 4079 119 55 5 chr6 156797085 156797698 -25617544 + LTR9B LTR ERV1 1 644 0 2798 154 86 57 chr6 156797698 156798205 -25617037 + LTR8A LTR ERV1 141 673 -54 4135 87 6 0 chr6 156798209 156798752 -25616490 - MER41A LTR ERV1 -8 546 1 25 31 0 0 chr6 156798857 156798889 -25616353 + AT_rich Low_complexity Low_complexity 1 32 0 1017 238 93 65 chr6 156799114 156799619 -25615623 + HAL1b LINE L1 89 607 -741 2324 98 0 0 chr6 156800050 156800345 -25614897 + AluSx SINE Alu 8 302 -10 2462 152 16 60 chr6 156800427 156800880 -25614362 - Tigger2a DNA MER2_type 0 434 2 225 0 0 0 chr6 156801007 156801032 -25614210 + (CAA)n Simple_repeat Simple_repeat 2 26 0 279 0 0 0 chr6 156801032 156801063 -25614179 + (CA)n Simple_repeat Simple_repeat 2 32 0 26 30 0 0 chr6 156801797 156801830 -25613412 + AT_rich Low_complexity Low_complexity 1 33 0 1899 167 58 65 chr6 156801854 156802316 -25612926 - LTR2B LTR ERV1 0 490 32 21 0 0 0 chr6 156802867 156802888 -25612354 + AT_rich Low_complexity Low_complexity 1 21 0 2013 165 30 67 chr6 156802905 156803310 -25611932 + MLT1B LTR MaLR 1 390 0 3088 75 0 0 chr6 156803912 156804315 -25610927 + L1PA13 LINE L1 5724 6128 -35 732 289 13 39 chr6 156804649 156804881 -25610361 + MIR SINE MIR 13 238 -24 269 263 25 0 chr6 156805885 156805965 -25609277 + MER94 DNA DNA 1 82 -52 24 32 0 0 chr6 156806700 156806731 -25608511 + AT_rich Low_complexity Low_complexity 1 31 0 486 318 29 12 chr6 156806807 156806977 -25608265 - MIR SINE MIR -56 206 34 389 331 66 24 chr6 156807663 156807829 -25607413 + MER5A DNA MER1_type 17 189 0 236 191 79 32 chr6 156807973 156808036 -25607206 - MIR3 SINE MIR -32 176 111 1089 215 4 48 chr6 156808892 156809162 -25606080 + MLT1A1 LTR MaLR 17 274 -91 8986 87 6 20 chr6 156809170 156811251 -25603991 + L1PA7 LINE L1 4093 6153 -1 189 0 0 0 chr6 156811349 156811370 -25603872 + (CTAG)n Simple_repeat Simple_repeat 3 23 0 494 222 97 0 chr6 156811378 156811522 -25603720 + L1MC1 LINE L1 4717 4874 -1272 276 149 0 0 chr6 156811540 156811587 -25603655 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 377 220 0 44 chr6 156811590 156811681 -25603561 - L1M4 LINE L1 -1994 4152 4066 334 161 0 16 chr6 156811681 156811743 -25603499 - L1MDa LINE L1 -5201 928 868 3646 193 39 46 chr6 156811834 156812241 -25603001 - L1MB8 LINE L1 0 6894 6486 2339 97 0 3 chr6 156812241 156812540 -25602702 - AluSc SINE Alu -11 298 1 3646 193 39 46 chr6 156812540 156813979 -25601263 - L1MB8 LINE L1 -408 6486 5061 6118 144 42 7 chr6 156814104 156815392 -25599850 + L1MC1 LINE L1 4998 6333 0 483 331 106 82 chr6 156815427 156816219 -25599023 - L1MDa LINE L1 -5303 816 6 424 254 24 40 chr6 156816284 156816410 -25598832 + MIR3 SINE MIR 78 201 -7 835 297 153 21 chr6 156817878 156818357 -25596885 - L2 LINE L2 -1280 2034 1465 1797 94 9 0 chr6 156818357 156818590 -25596652 + AluSg SINE Alu 1 235 -75 835 297 153 21 chr6 156818590 156818685 -25596557 - L2 LINE L2 -1849 1465 1384 183 355 21 54 chr6 156818685 156818778 -25596464 - L2 LINE L2 -2846 468 379 407 272 132 62 chr6 156819657 156819699 -25595543 + L1ME4a LINE L1 5318 5356 -765 2483 33 3 30 chr6 156819699 156820003 -25595239 + AluY SINE Alu 1 296 -15 407 272 132 62 chr6 156820003 156820317 -25594925 + L1ME4a LINE L1 5356 5699 -422 371 209 101 7 chr6 156820357 156820496 -25594746 + L1ME4a LINE L1 5955 6106 -15 3872 160 64 14 chr6 156820505 156821222 -25594020 - L1MB8 LINE L1 -3139 3723 3044 2232 131 0 0 chr6 156821222 156821534 -25593708 - AluSq SINE Alu -1 312 1 3872 160 64 14 chr6 156821534 156821633 -25593609 - L1MB8 LINE L1 -3818 3044 2951 207 0 0 0 chr6 156821633 156821656 -25593586 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3872 160 64 14 chr6 156821656 156822072 -25593170 - L1MB8 LINE L1 -3911 2951 2432 * 5525 155 7 16 chr6 156822068 156823899 -25591343 + L1PB2 LINE L1 4333 6150 -1 21 0 0 0 chr6 156824584 156824605 -25590637 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr6 156824702 156824744 -25590498 + AT_rich Low_complexity Low_complexity 1 42 0 299 279 105 42 chr6 156825420 156825610 -25589632 + MIR SINE MIR 20 221 -41 1084 280 79 46 chr6 156826303 156827011 -25588231 - L2 LINE L2 -2 3311 2573 880 239 60 42 chr6 156827237 156827622 -25587620 + L1ME1 LINE L1 4074 4465 -1681 * 1172 248 45 5 chr6 156827620 156827995 -25587247 - L1M4 LINE L1 -1233 4913 4524 1308 148 140 0 chr6 156827995 156828245 -25586997 - MLT2B1 LTR ERVL -234 286 2 2202 117 0 26 chr6 156828245 156828553 -25586689 + AluSx SINE Alu 1 300 -12 2352 207 73 79 chr6 156828566 156829230 -25586012 + L1ME1 LINE L1 5100 5744 -422 6891 53 2 0 chr6 156829230 156830813 -25584429 - L1PA7 LINE L1 0 6154 4557 2352 207 73 79 chr6 156830813 156831227 -25584015 + L1ME1 LINE L1 5744 6159 -7 7776 46 0 0 chr6 156831278 156833020 -25582222 - L1PA5 LINE L1 0 6154 4413 1253 231 3 64 chr6 156833251 156833641 -25581601 - MLT1A2 LTR MaLR -8 459 1 2200 117 0 10 chr6 156833887 156834195 -25581047 + AluSx SINE Alu 6 310 -2 1422 194 124 5 chr6 156834630 156835002 -25580240 - LTR52 LTR ERVL -3 418 3 281 241 86 9 chr6 156835134 156835250 -25579992 - L1ME4a LINE L1 -26 6095 5971 2331 111 0 9 chr6 156835277 156835592 -25579650 + AluSx SINE Alu 1 312 0 26 30 0 0 chr6 156835598 156835631 -25579611 + AT_rich Low_complexity Low_complexity 1 33 0 378 138 0 0 chr6 156836670 156836728 -25578514 + MER58 DNA MER1_type 2363 2420 0 234 0 0 0 chr6 156836941 156836967 -25578275 + (CA)n Simple_repeat Simple_repeat 1 26 0 2323 93 3 3 chr6 156837001 156837312 -25577930 + AluSq SINE Alu 1 311 -2 584 315 46 8 chr6 156837522 156837763 -25577479 - MIR SINE MIR 0 262 13 300 154 0 0 chr6 156838300 156838352 -25576890 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 273 167 24 12 chr6 156838415 156838499 -25576743 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 2039 150 0 3 chr6 156838839 156839145 -25576097 + AluJb SINE Alu 1 305 -7 2210 125 0 0 chr6 156840889 156841185 -25574057 + AluSx SINE Alu 1 296 -16 1304 268 104 19 chr6 156841337 156841867 -25573375 + L2 LINE L2 1080 1654 -1660 1933 272 184 29 chr6 156842507 156843655 -25571587 + L2 LINE L2 1686 3011 -302 385 280 7 80 chr6 156843656 156843806 -25571436 + L2 LINE L2 3159 3297 -16 2488 124 5 16 chr6 156843932 156844311 -25570931 - THE1C LTR MaLR 0 375 1 189 0 0 0 chr6 156844332 156844353 -25570889 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1189 147 88 103 chr6 156844362 156844702 -25570540 - MLT1A2 LTR MaLR -39 335 1 1315 207 61 87 chr6 156844906 156845646 -25569596 - L1MC5 LINE L1 -42 7919 7199 4832 226 48 13 chr6 156845646 156847027 -25568215 - Charlie1a DNA MER1_type 0 1455 26 1307 248 68 84 chr6 156847049 156847933 -25567309 - L1MC5 LINE L1 -759 7202 6307 1897 152 35 35 chr6 156847933 156848308 -25566934 - THE1C LTR MaLR 0 375 1 1307 248 68 84 chr6 156848308 156848576 -25566666 - L1MC5 LINE L1 -1654 6307 6036 245 232 0 0 chr6 156848634 156848690 -25566552 - L1MC5 LINE L1 -1874 5934 5879 2134 171 21 23 chr6 156848699 156849126 -25566116 - Tigger2a DNA MER2_type -8 426 1 1085 255 10 23 chr6 156849131 156849441 -25565801 - L1MC5 LINE L1 -1941 5867 5562 640 269 143 53 chr6 156849444 156849499 -25565743 + LTR50 LTR ERVL 1 50 -745 1603 206 50 37 chr6 156849499 156849936 -25565306 - LTR47B LTR ERVL 0 443 1 640 269 143 53 chr6 156849936 156850431 -25564811 + LTR50 LTR ERVL 50 601 -194 274 146 0 0 chr6 156850448 156850496 -25564746 + MADE1 DNA Mariner 33 80 0 431 265 107 58 chr6 156850617 156850757 -25564485 - L1MC5 LINE L1 -2241 5567 5435 1695 144 22 7 chr6 156850757 156851028 -25564214 - AluJo SINE Alu -4 308 34 431 265 107 58 chr6 156851028 156851178 -25564064 - L1MC5 LINE L1 -2373 5435 5263 233 226 0 19 chr6 156853808 156853861 -25561381 + L2 LINE L2 3262 3313 0 571 281 64 0 chr6 156853916 156854087 -25561155 + MIR3 SINE MIR 21 202 -6 301 282 39 10 chr6 156854542 156854645 -25560597 + MIR SINE MIR 59 164 -98 2379 94 7 0 chr6 156854796 156855105 -25560137 + AluSx SINE Alu 1 311 -1 291 54 0 0 chr6 156855112 156855149 -25560093 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 332 264 246 12 chr6 156855344 156855511 -25559731 + MIR SINE MIR 47 252 -10 24 0 0 0 chr6 156855777 156855801 -25559441 + GC_rich Low_complexity Low_complexity 1 24 0 40 79 0 0 chr6 156858118 156858207 -25557035 + GC_rich Low_complexity Low_complexity 1 89 0 26 0 0 0 chr6 156858356 156858382 -25556860 + GC_rich Low_complexity Low_complexity 1 26 0 2135 100 10 10 chr6 156860909 156861209 -25554033 - AluSx SINE Alu -12 300 1 182 263 18 35 chr6 156861619 156861676 -25553566 + MIR SINE MIR 101 156 -106 556 314 52 75 chr6 156861678 156862120 -25553122 - L2 LINE L2 -20 3252 2821 216 0 0 0 chr6 156864135 156864159 -25551083 + (T)n Simple_repeat Simple_repeat 1 24 0 969 163 0 0 chr6 156864313 156864579 -25550663 + (TCCA)n Simple_repeat Simple_repeat 1 446 0 243 247 169 34 chr6 156864579 156864668 -25550574 - L2 LINE L2 0 3272 3172 456 198 0 31 chr6 156864941 156865037 -25550205 + MER96B DNA MER1_type? 1 93 -82 440 294 203 5 chr6 156865297 156865484 -25549758 + MIR SINE MIR 1 224 -38 663 162 18 0 chr6 156865488 156865599 -25549643 - MLT1C LTR MaLR -7 460 348 3949 192 42 6 chr6 156865599 156866308 -25548934 - ERVL LTR ERVL -2468 3296 2562 501 311 78 31 chr6 156866505 156866862 -25548380 - MARNA DNA Mariner -28 558 185 1659 202 147 15 chr6 156868188 156868942 -25546300 - MER97a DNA MER1_type? -1 893 7 227 276 69 23 chr6 156868958 156869045 -25546197 + MIR SINE MIR 122 212 -50 2062 99 31 14 chr6 156869071 156869364 -25545878 - AluSx SINE Alu -12 300 3 1737 149 55 3 chr6 156869671 156869980 -25545262 - L1MA9 LINE L1 0 6312 5988 23 0 0 0 chr6 156870081 156870104 -25545138 + AT_rich Low_complexity Low_complexity 1 23 0 492 276 62 0 chr6 156870509 156870654 -25544588 + MIR SINE MIR 90 243 -19 423 307 25 56 chr6 156871091 156871410 -25543832 - L1M4 LINE L1 -1944 4202 3894 252 77 0 0 chr6 156873349 156873388 -25541854 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 587 280 60 30 chr6 156873800 156874000 -25541242 - MIR SINE MIR -51 211 6 341 231 90 30 chr6 156875235 156875369 -25539873 - L2 LINE L2 -7 3306 3165 2562 139 49 7 chr6 156876113 156876524 -25538718 - MSTA LTR MaLR 0 428 1 1268 90 37 11 chr6 156876528 156876717 -25538525 - MSTA-int LTR MaLR -4 1647 1454 2224 144 55 0 chr6 156876773 156877135 -25538107 - MSTA LTR MaLR -46 382 1 2292 140 57 13 chr6 156877186 156877558 -25537684 - MLT1B LTR MaLR 0 390 3 606 329 9 14 chr6 156877874 156878084 -25537158 + MIR SINE MIR 40 248 -14 22 0 0 0 chr6 156878232 156878254 -25536988 + AT_rich Low_complexity Low_complexity 1 22 0 253 250 70 30 chr6 156880408 156880508 -25534734 + L2 LINE L2 3166 3269 -3 970 201 36 18 chr6 156880529 156880748 -25534494 - MER63 DNA MER1_type -744 317 95 21 0 0 0 chr6 156880759 156880780 -25534462 + AT_rich Low_complexity Low_complexity 1 21 0 271 187 53 13 chr6 156881010 156881085 -25534157 + L2 LINE L2 3221 3298 -15 4987 75 21 14 chr6 156881096 156881748 -25533494 - L1PB2 LINE L1 -2 6149 5493 425 158 0 114 chr6 156881748 156881862 -25533380 - MER63 DNA MER1_type -953 108 8 321 200 156 0 chr6 156882119 156882209 -25533033 - MER69 DNA AcHobo -2 2524 2421 1342 96 0 0 chr6 156882269 156882446 -25532796 + AluSp SINE Alu 137 313 0 1739 155 13 36 chr6 156882662 156882971 -25532271 - MLT2D LTR ERVL -110 304 3 5625 66 22 4 chr6 156883350 156884029 -25531213 - LTR8 LTR ERV1 0 691 1 45300 84 17 30 chr6 156884029 156884941 -25530301 - HUERS-P1 LTR ERV1 0 6263 5341 2315 95 0 0 chr6 156884941 156885236 -25530006 - AluY SINE Alu -16 295 1 45300 84 17 30 chr6 156885236 156886424 -25528818 - HUERS-P1 LTR ERV1 -922 5341 4139 2394 39 7 20 chr6 156886424 156886730 -25528512 + AluY SINE Alu 1 302 -9 45300 84 17 30 chr6 156886730 156889887 -25525355 - HUERS-P1 LTR ERV1 -2124 4139 1098 2249 104 0 22 chr6 156889887 156890203 -25525039 - AluSx SINE Alu -3 309 1 45300 84 17 30 chr6 156890203 156891288 -25523954 - HUERS-P1 LTR ERV1 -5165 1098 1 5726 84 1 0 chr6 156891288 156891978 -25523264 - LTR8 LTR ERV1 0 691 1 299 342 8 0 chr6 156894614 156894734 -25520508 + (TA)n Simple_repeat Simple_repeat 1 121 0 777 231 147 76 chr6 156894945 156895201 -25520041 - MLT1J2 LTR MaLR -1 414 168 2401 84 0 0 chr6 156895201 156895497 -25519745 + AluSp SINE Alu 1 296 -17 777 231 147 76 chr6 156895497 156895658 -25519584 - MLT1J2 LTR MaLR -247 168 20 2202 199 100 35 chr6 156896136 156896745 -25518497 - MLT1E2 LTR MaLR 0 626 10 259 244 75 125 chr6 156897426 156897586 -25517656 + MIR3 SINE MIR 29 180 -28 1005 251 126 11 chr6 156897871 156898142 -25517100 + MLT1I LTR MaLR 106 407 -2 385 343 78 39 chr6 156898366 156898675 -25516567 + LTR16C LTR ERVL 158 478 -13 4349 126 24 8 chr6 156898891 156898916 -25516326 + L1PB4 LINE L1 5466 5489 -667 1515 167 27 33 chr6 156898916 156899216 -25516026 + AluJo SINE Alu 1 298 -14 4349 126 24 8 chr6 156899216 156899858 -25515384 + L1PB4 LINE L1 5489 6144 -12 255 305 74 11 chr6 156900208 156900303 -25514939 - MIR3 SINE MIR -1 207 107 329 62 21 0 chr6 156900755 156900803 -25514439 + (TA)n Simple_repeat Simple_repeat 1 49 0 25 31 0 0 chr6 156900809 156900841 -25514401 + AT_rich Low_complexity Low_complexity 1 32 0 808 260 25 37 chr6 156902026 156902268 -25512974 - MIR SINE MIR -3 259 21 2460 141 13 13 chr6 156902913 156903288 -25511954 - THE1C LTR MaLR 0 375 1 5680 183 73 42 chr6 156903811 156905051 -25510191 + Charlie1a DNA MER1_type 1 1290 -1471 2499 61 0 0 chr6 156905051 156905345 -25509897 - AluY SINE Alu -17 294 1 5680 183 73 42 chr6 156905345 156905500 -25509742 + Charlie1a DNA MER1_type 1290 1439 -16 1543 200 83 41 chr6 156906278 156906713 -25508529 - MLT1C LTR MaLR -7 460 8 356 262 50 89 chr6 156906789 156906991 -25508251 + MIR SINE MIR 61 254 -8 2097 79 18 14 chr6 156910140 156910443 -25504799 - AluSc SINE Alu 0 304 1 2638 46 0 0 chr6 156911494 156911801 -25503441 + AluY SINE Alu 1 307 -4 186 103 0 0 chr6 156912350 156912379 -25502863 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1204 253 22 55 chr6 156913297 156913664 -25501578 + L3 LINE CR1 1 355 -1222 2019 139 3 7 chr6 156914418 156914713 -25500529 - AluSx SINE Alu -18 294 1 295 312 52 52 chr6 156916435 156916589 -25498653 + MIR SINE MIR 88 241 -21 250 125 83 0 chr6 156916764 156916812 -25498430 + L2 LINE L2 3220 3271 -1 243 0 0 0 chr6 156916873 156916900 -25498342 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 2245 98 29 10 chr6 156917898 156918204 -25497038 + AluSx SINE Alu 1 312 0 248 305 12 24 chr6 156919423 156919505 -25495737 + MIR SINE MIR 40 120 -142 339 291 24 31 chr6 156919725 156919852 -25495390 - MIR3 SINE MIR -16 192 67 267 214 36 60 chr6 156920998 156921082 -25494160 + L2 LINE L2 3190 3271 -1 24 32 0 0 chr6 156921335 156921366 -25493876 + AT_rich Low_complexity Low_complexity 1 31 0 721 164 0 0 chr6 156921446 156921556 -25493686 - FRAM SINE Alu -29 147 38 353 272 57 57 chr6 156922093 156922150 -25493092 + MIR SINE MIR 28 84 -178 2026 133 37 37 chr6 156922150 156922525 -25492717 - THE1C LTR MaLR 0 375 1 353 272 57 57 chr6 156922525 156922625 -25492617 + MIR SINE MIR 83 185 -77 2331 82 0 13 chr6 156922797 156923100 -25492142 + AluY SINE Alu 2 300 -11 638 259 139 15 chr6 156923168 156923369 -25491873 - MIR SINE MIR -26 236 11 1258 192 92 46 chr6 156923505 156923854 -25491388 - MLT1A1 LTR MaLR 0 365 1 1223 247 118 29 chr6 156923870 156924550 -25490692 - HsTC2a DNA MER2_type 0 744 5 37 0 0 0 chr6 156924874 156924911 -25490331 + AT_rich Low_complexity Low_complexity 1 37 0 2253 101 7 3 chr6 156925096 156925392 -25489850 - AluSx SINE Alu -15 297 1 394 226 32 11 chr6 156925590 156925683 -25489559 - MIR SINE MIR -71 191 97 265 156 16 16 chr6 156926407 156926471 -25488771 + CT-rich Low_complexity Low_complexity 3 66 0 266 267 158 10 chr6 156927785 156927886 -25487356 + MIR SINE MIR 8 123 -139 2026 133 31 0 chr6 156928408 156928701 -25486541 - AluSx SINE Alu -1 311 10 325 300 118 9 chr6 156928813 156928923 -25486319 - L2 LINE L2 -5 3308 3187 754 195 67 26 chr6 156929447 156929642 -25485600 + MER3 DNA MER1_type 2 204 -5 609 299 145 46 chr6 156930095 156930973 -25484269 - L2 LINE L2 -805 2509 1545 1838 96 0 36 chr6 156931030 156931281 -25483961 + AluSx SINE Alu 1 242 -70 225 0 0 0 chr6 156932772 156932797 -25482445 + (CA)n Simple_repeat Simple_repeat 2 26 0 267 248 26 43 chr6 156932991 156933108 -25482134 + L1ME4a LINE L1 5944 6058 -63 21 0 0 0 chr6 156933146 156933167 -25482075 + AT_rich Low_complexity Low_complexity 1 21 0 38 51 0 0 chr6 156935613 156935672 -25479570 + AT_rich Low_complexity Low_complexity 1 59 0 317 289 99 28 chr6 156936033 156936175 -25479067 + L2 LINE L2 3156 3307 -6 1937 170 3 0 chr6 156936179 156936490 -25478752 - AluSx SINE Alu 0 312 1 2210 99 0 38 chr6 156937266 156937579 -25477663 - AluSx SINE Alu -11 301 1 271 149 85 128 chr6 156937883 156937909 -25477333 - MER94 DNA DNA -35 99 73 1750 151 11 14 chr6 156937909 156938208 -25477034 - AluJo SINE Alu 0 302 5 271 149 85 128 chr6 156938208 156938274 -25476968 - MER94 DNA DNA -61 73 10 528 256 69 19 chr6 156938398 156938558 -25476684 + MIR SINE MIR 2 169 -93 224 260 42 62 chr6 156938632 156938728 -25476514 + MIR SINE MIR 167 260 -2 240 289 72 12 chr6 156939277 156939360 -25475882 + L2 LINE L2 3164 3251 -21 2076 141 7 0 chr6 156939366 156939664 -25475578 - AluSx SINE Alu -12 300 1 206 298 66 25 chr6 156940251 156940372 -25474870 + L2 LINE L2 3145 3270 -2 963 150 12 19 chr6 156941033 156941193 -25474049 - AluJo SINE Alu -104 208 50 335 364 43 0 chr6 156941627 156941767 -25473475 + MIR SINE MIR 92 237 -25 207 239 22 0 chr6 156941881 156941927 -25473315 - MIR3 SINE MIR -11 197 151 302 301 87 63 chr6 156942123 156942409 -25472833 - L2 LINE L2 0 3313 3021 2276 90 3 3 chr6 156942800 156943099 -25472143 + AluSx SINE Alu 1 299 -13 195 287 254 0 chr6 156944192 156944373 -25470869 - MIR SINE MIR 0 262 36 2314 103 0 3 chr6 156944476 156944778 -25470464 - AluSc SINE Alu -8 301 1 192 383 0 0 chr6 156944801 156944861 -25470381 + MIR SINE MIR 92 151 -111 1770 173 3 40 chr6 156947053 156947376 -25467866 - AluJb SINE Alu 0 312 2 30 27 0 0 chr6 156948442 156948479 -25466763 + AT_rich Low_complexity Low_complexity 1 37 0 2204 105 0 0 chr6 156951416 156951743 -25463499 + AluSx SINE Alu 1 327 0 21 0 0 0 chr6 156952364 156952385 -25462857 + AT_rich Low_complexity Low_complexity 1 21 0 220 318 16 16 chr6 156952579 156952642 -25462600 - MIR SINE MIR -111 97 35 193 28 0 56 chr6 156952733 156952769 -25462473 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr6 156953835 156953856 -25461386 + AT_rich Low_complexity Low_complexity 1 21 0 1658 192 20 13 chr6 156954067 156954369 -25460873 - AluJo SINE Alu -8 304 1 291 310 211 16 chr6 156954943 156955185 -25460057 + L3 LINE CR1 1238 1526 -51 29 28 0 0 chr6 156955480 156955516 -25459726 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr6 156955645 156955679 -25459563 + AT_rich Low_complexity Low_complexity 1 34 0 427 216 192 30 chr6 156955679 156955846 -25459396 - MIR SINE MIR -58 204 11 207 0 0 0 chr6 156955918 156955941 -25459301 + (A)n Simple_repeat Simple_repeat 1 23 0 244 226 19 0 chr6 156956024 156956077 -25459165 - MER5B DNA MER1_type 0 178 125 6964 122 26 11 chr6 156956137 156957920 -25457322 + L1MA1 LINE L1 4479 6298 -4 33 0 0 0 chr6 156957920 156957953 -25457289 + AT_rich Low_complexity Low_complexity 1 33 0 1711 160 32 85 chr6 156958042 156958454 -25456788 + MLT1B LTR MaLR 1 390 0 2208 84 0 36 chr6 156958515 156958823 -25456419 - AluSg SINE Alu -13 297 1 2273 102 0 16 chr6 156959839 156960142 -25455100 - AluSx SINE Alu -14 298 1 1482 94 5 9 chr6 156960150 156960373 -25454869 - L1PA13 LINE L1 0 6163 5942 2105 100 0 4 chr6 156961714 156962021 -25453221 + AluSg SINE Alu 2 307 0 25 0 0 0 chr6 156962350 156962375 -25452867 + AT_rich Low_complexity Low_complexity 1 25 0 1761 156 123 28 chr6 156962740 156963131 -25452111 - MSTA LTR MaLR 0 428 1 264 229 135 21 chr6 156964649 156964745 -25450497 + MIR SINE MIR 36 142 -120 232 185 37 37 chr6 156964714 156964768 -25450474 + MIR3 SINE MIR 111 164 -44 * 192 97 0 0 chr6 156965201 156965232 -25450010 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2094 186 0 3 chr6 156965722 156966088 -25449154 + MLT1A1 LTR MaLR 1 365 0 188 167 0 19 chr6 156966135 156966189 -25449053 + CT-rich Low_complexity Low_complexity 1 53 0 707 232 27 5 chr6 156966436 156966621 -25448621 - L1MEc LINE L1 -6173 223 35 617 212 103 0 chr6 156967561 156967726 -25447516 - Charlie1 DNA MER1_type -1 2760 2579 180 200 0 0 chr6 156967773 156967813 -25447429 + CT-rich Low_complexity Low_complexity 3 42 0 731 266 80 0 chr6 156967892 156968118 -25447124 - Charlie1a DNA MER1_type -1210 245 2 21 57 0 0 chr6 156968137 156968172 -25447070 + AT_rich Low_complexity Low_complexity 1 35 0 1805 258 61 36 chr6 156968203 156968960 -25446282 - L1ME3A LINE L1 -9 6579 5804 4614 182 25 27 chr6 156968967 156969429 -25445813 - Tigger6a DNA MER2_type -514 1083 622 1957 125 84 0 chr6 156969429 156969716 -25445526 - AluSx SINE Alu -1 311 1 4614 182 25 27 chr6 156969716 156970267 -25444975 - Tigger6a DNA MER2_type -975 622 72 946 304 68 15 chr6 156970311 156970969 -25444273 - L1ME3A LINE L1 -763 5801 5109 498 69 0 0 chr6 156971126 156971198 -25444044 - L1PA7 LINE L1 0 6154 6083 265 234 31 39 chr6 156971211 156971339 -25443903 - L1ME3A LINE L1 -1471 5093 4967 216 97 0 0 chr6 156971474 156971505 -25443737 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1597 167 42 8 chr6 156971517 156971780 -25443462 - AluJb SINE Alu -6 306 35 304 243 120 82 chr6 156971861 156972369 -25442873 - L1MEc LINE L1 -4281 2284 1500 311 214 101 82 chr6 156972443 156972602 -25442640 - L1MEc LINE L1 -4963 1082 921 282 289 109 0 chr6 156973623 156973751 -25441491 + MIR SINE MIR 75 216 -46 22 35 0 0 chr6 156974571 156974600 -25440642 + AT_rich Low_complexity Low_complexity 1 29 0 1813 121 48 0 chr6 156974620 156974912 -25440330 + AluSx SINE Alu 1 305 0 287 240 53 13 chr6 156974995 156975070 -25440172 + MIR3 SINE MIR 82 159 -49 1992 141 3 0 chr6 156975253 156975536 -25439706 - AluSp SINE Alu -29 284 1 243 336 71 40 chr6 156975797 156976050 -25439192 + MARNA DNA Mariner 91 351 -235 180 0 0 0 chr6 156976217 156976237 -25439005 + (CA)n Simple_repeat Simple_repeat 2 21 0 208 369 25 33 chr6 156976428 156976550 -25438692 - L3b LINE CR1 -127 1456 1336 2293 83 7 10 chr6 156977926 156978216 -25437026 + AluSx SINE Alu 1 289 -23 1653 155 4 0 chr6 156978812 156979064 -25436178 + AluJo SINE Alu 36 288 -24 334 268 65 57 chr6 156979850 156979973 -25435269 - L2 LINE L2 0 3272 3149 217 296 20 50 chr6 156980906 156981021 -25434221 + MIR SINE MIR 48 162 -46 784 196 89 0 chr6 156981176 156981355 -25433887 - MLT1A1 LTR MaLR -46 319 125 904 107 0 20 chr6 156981359 156981508 -25433734 - LOR1a LTR ERV1 0 497 352 1296 217 27 7 chr6 156981873 156982143 -25433099 - LOR1b LTR ERV1 -155 306 28 2172 144 0 12 chr6 156982143 156982482 -25432760 - MER1B DNA MER1_type 0 337 3 1296 217 27 7 chr6 156982482 156982511 -25432731 - LOR1b LTR ERV1 -433 28 1 478 226 52 0 chr6 156982511 156982626 -25432616 - MLT1A1 LTR MaLR -241 124 4 222 321 19 66 chr6 156982629 156982735 -25432507 + L2 LINE L2 2942 3042 -230 442 268 119 83 chr6 156982855 156983299 -25431943 - L2 LINE L2 -4 3268 2809 251 175 0 113 chr6 156983444 156983524 -25431718 + L2 LINE L2 3202 3272 0 187 182 36 91 chr6 156984513 156984568 -25430674 - MIR3 SINE MIR -39 169 118 27 29 0 0 chr6 156985499 156985533 -25429709 + AT_rich Low_complexity Low_complexity 1 34 0 1898 115 9 71 chr6 156985595 156985918 -25429324 + AluSx SINE Alu 1 303 -9 2435 94 51 11 chr6 156986226 156986576 -25428666 - THE1B LTR MaLR 0 364 1 207 114 0 0 chr6 156987054 156987089 -25428153 + (TG)n Simple_repeat Simple_repeat 2 36 0 2332 100 0 13 chr6 156987304 156987614 -25427628 - AluSx SINE Alu -6 306 1 2368 100 0 0 chr6 156988127 156988437 -25426805 - AluY SINE Alu -1 310 1 2234 100 3 19 chr6 156990460 156990770 -25424472 - AluSq SINE Alu -8 305 1 838 208 159 10 chr6 156990808 156991015 -25424227 - MER8 DNA MER2_type -1 238 1 204 318 143 16 chr6 156992239 156992288 -25422954 + MIR SINE MIR 109 150 -112 1972 128 21 97 chr6 156992288 156992710 -25422532 + MLT1B LTR MaLR 1 390 0 204 318 143 16 chr6 156992710 156992786 -25422456 + MIR SINE MIR 150 250 -12 319 321 169 32 chr6 156994038 156994508 -25420734 + L2 LINE L2 2568 3105 -167 2796 182 15 18 chr6 156994539 156995083 -25420159 + MER44D DNA MER2_type 8 604 -1 225 319 66 0 chr6 156995087 156995178 -25420064 + L2 LINE L2 3172 3268 -45 572 118 31 16 chr6 156995202 156995329 -25419913 + GA-rich Low_complexity Low_complexity 2 130 0 472 273 29 41 chr6 156995420 156995592 -25419650 - MIR SINE MIR -71 191 22 21 36 0 0 chr6 156996314 156996342 -25418900 + AT_rich Low_complexity Low_complexity 1 28 0 323 315 45 18 chr6 156996594 156996705 -25418537 - MIR3 SINE MIR -14 194 81 1300 184 31 96 chr6 156996729 156997116 -25418126 + MLT1A2 LTR MaLR 1 362 -12 199 400 0 0 chr6 156997225 156997295 -25417947 - MIR SINE MIR -109 99 30 524 306 65 33 chr6 156997541 156997786 -25417456 - MER70A LTR ERVL -208 264 12 234 182 26 13 chr6 156998057 156998134 -25417108 + CT-rich Low_complexity Low_complexity 3 80 0 239 269 161 21 chr6 156998931 156999024 -25416218 + MER5A DNA MER1_type 1 106 -83 8079 171 90 20 chr6 156999329 157000968 -25414274 - MER52A LTR ERV1 0 1755 3 327 277 120 33 chr6 157001200 157001384 -25413858 + L2 LINE L2 2646 2845 -469 326 286 22 0 chr6 157001363 157001454 -25413788 + L2 LINE L2 3180 3272 0 * 1358 95 33 47 chr6 157001887 157002130 -25413112 + AluSg/x SINE Alu 80 319 0 2282 110 0 0 chr6 157002933 157003233 -25412009 - AluSx SINE Alu -12 300 1 2345 40 0 7 chr6 157004439 157004717 -25410525 + AluY SINE Alu 18 293 -18 36891 33 22 1 chr6 157004943 157010501 -25404741 - L1PA3 LINE L1 -1 6154 476 22 35 0 0 chr6 157010781 157010810 -25404432 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chr6 157010845 157010904 -25404338 + AT_rich Low_complexity Low_complexity 1 59 0 195 274 113 113 chr6 157011157 157011387 -25403855 - L2 LINE L2 -3 3269 3040 301 217 14 0 chr6 157011470 157011539 -25403703 + L1ME2 LINE L1 118 187 -6209 2910 237 62 17 chr6 157011615 157012931 -25402311 + L1ME2 LINE L1 4838 6231 -2 459 0 0 0 chr6 157013010 157013061 -25402181 + (TG)n Simple_repeat Simple_repeat 2 52 0 267 372 112 0 chr6 157013157 157013399 -25401843 + L2 LINE L2 2489 2757 -557 425 381 66 0 chr6 157013453 157013650 -25401592 - MIR SINE MIR -25 237 28 2230 84 13 13 chr6 157013990 157014288 -25400954 - AluSg SINE Alu -12 298 1 208 279 0 0 chr6 157016169 157016212 -25399030 + (CG)n Simple_repeat Simple_repeat 1 43 0 1425 180 22 99 chr6 157016624 157016955 -25398287 + MLT1A2 LTR MaLR 1 356 -18 210 37 0 0 chr6 157016955 157016982 -25398260 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2177 95 0 30 chr6 157016985 157017281 -25397961 - AluY SINE Alu -24 287 1 1425 180 22 99 chr6 157017281 157017350 -25397892 + MLT1A2 LTR MaLR 358 374 0 1719 182 14 17 chr6 157018091 157018382 -25396860 - AluJo SINE Alu -22 290 1 857 152 168 21 chr6 157019613 157019804 -25395438 - MER20 DNA MER1_type 0 219 1 250 289 40 0 chr6 157019818 157019894 -25395348 + L2 LINE L2 3193 3271 -1 515 236 83 7 chr6 157020551 157020695 -25394547 - MIR SINE MIR -4 258 104 253 266 158 45 chr6 157020694 157020871 -25394371 - L2 LINE L2 0 3313 3117 * 409 244 59 3 chr6 157020889 157021026 -25394216 + MIR SINE MIR 74 251 -11 258 301 156 58 chr6 157021234 157021959 -25393283 - L2 LINE L2 -450 2864 2069 505 283 58 34 chr6 157022319 157022524 -25392718 - Charlie8 DNA MER1_type -2187 230 21 364 324 93 0 chr6 157023374 157023513 -25391729 - MIR SINE MIR -93 169 18 317 215 31 0 chr6 157025155 157025220 -25390022 - L2 LINE L2 -3 3269 3203 2338 98 3 3 chr6 157025876 157026181 -25389061 + AluSq SINE Alu 1 305 -8 245 128 13 39 chr6 157026181 157026259 -25388983 + (TA)n Simple_repeat Simple_repeat 1 76 0 249 330 134 0 chr6 157027043 157027155 -25388087 + L2 LINE L2 3187 3313 0 551 189 13 46 chr6 157028199 157028352 -25386890 + L1MA10 LINE L1 6172 6319 -15 3431 111 74 7 chr6 157028778 157029335 -25385907 + L1PA13 LINE L1 5565 6158 -5 241 115 0 148 chr6 157030930 157030991 -25384251 + L2 LINE L2 3262 3313 0 221 356 9 52 chr6 157031694 157031809 -25383433 + L2 LINE L2 3121 3230 -42 25 0 0 0 chr6 157032287 157032312 -25382930 + AT_rich Low_complexity Low_complexity 1 25 0 2128 134 0 7 chr6 157032688 157032995 -25382247 - AluSx SINE Alu -7 305 1 655 97 0 0 chr6 157033416 157033509 -25381733 + L1PA8 LINE L1 6071 6163 -9 193 322 78 26 chr6 157033861 157033976 -25381266 - MIR3 SINE MIR -75 133 13 21 36 0 0 chr6 157034552 157034580 -25380662 + AT_rich Low_complexity Low_complexity 1 28 0 219 36 0 0 chr6 157034685 157034713 -25380529 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 247 255 0 0 chr6 157034717 157034768 -25380474 - L2 LINE L2 -17 3296 3246 2269 102 3 10 chr6 157034891 157035204 -25380038 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr6 157035262 157035297 -25379945 + AT_rich Low_complexity Low_complexity 1 35 0 245 125 0 21 chr6 157037175 157037223 -25378019 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 2253 34 41 31 chr6 157037673 157037964 -25377278 - AluY SINE Alu -17 294 1 3282 91 13 9 chr6 157038214 157038665 -25376577 + MLT2A2 LTR ERVL 1 453 0 248 337 10 10 chr6 157039424 157039522 -25375720 + (TATG)n Simple_repeat Simple_repeat 3 100 0 283 388 26 35 chr6 157039719 157040059 -25375183 - L2 LINE L2 -433 2881 2545 2317 110 10 0 chr6 157040126 157040434 -25374808 - AluSx SINE Alu -1 311 1 22 0 0 0 chr6 157041908 157041930 -25373312 + AT_rich Low_complexity Low_complexity 1 22 0 2364 87 0 13 chr6 157044825 157045134 -25370108 + AluSx SINE Alu 1 305 -7 478 326 100 11 chr6 157045521 157045962 -25369280 + LTR33A LTR ERVL 36 515 -8 1958 150 61 6 chr6 157046252 157046598 -25368644 - MER47A DNA MER2_type -1 365 1 349 276 75 30 chr6 157046608 157046742 -25368500 + L2 LINE L2 3133 3272 0 289 296 134 42 chr6 157047259 157047566 -25367676 + MLT1L LTR MaLR 151 485 -130 251 316 65 29 chr6 157048259 157048398 -25366844 + MIR SINE MIR 98 241 -21 2121 124 0 3 chr6 157049345 157049651 -25365591 + AluSq SINE Alu 1 305 -8 545 271 154 19 chr6 157049702 157049916 -25365326 - MIR SINE MIR -19 243 1 263 246 105 0 chr6 157050143 157050200 -25365042 - L2 LINE L2 -4 3268 3206 281 360 29 0 chr6 157050482 157050621 -25364621 + MIR SINE MIR 12 154 -108 24 0 0 0 chr6 157051244 157051268 -25363974 + AT_rich Low_complexity Low_complexity 1 24 0 347 319 22 87 chr6 157052231 157052460 -25362782 - L3 LINE CR1 -91 1486 1273 796 213 117 44 chr6 157052486 157052753 -25362489 + Charlie4a DNA MER1_type 47 350 -1611 2116 111 14 14 chr6 157052753 157053042 -25362200 - AluSx SINE Alu -23 289 1 796 213 117 44 chr6 157053042 157053141 -25362101 + Charlie4a DNA MER1_type 350 440 -68 5418 150 21 18 chr6 157053141 157055017 -25360225 + L1MA7 LINE L1 4410 6291 0 3769 221 66 16 chr6 157055037 157056424 -25358818 + L1MD2 LINE L1 4894 6347 -12 1773 153 49 0 chr6 157056428 157056715 -25358527 + AluSx SINE Alu 1 301 -11 272 91 23 0 chr6 157057028 157057072 -25358170 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 2264 122 0 0 chr6 157057449 157057752 -25357490 + AluSx SINE Alu 1 303 -9 341 272 48 10 chr6 157058090 157058193 -25357049 + MIR3 SINE MIR 95 201 -7 686 327 36 24 chr6 157058270 157058518 -25356724 - MIR SINE MIR 0 262 12 551 170 20 0 chr6 157058814 157058914 -25356328 - MER58B DNA MER1_type 0 341 240 21 0 0 0 chr6 157059035 157059056 -25356186 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 157059230 157059252 -25355990 + AT_rich Low_complexity Low_complexity 1 22 0 2240 182 64 38 chr6 157060475 157060823 -25354419 + MER44D DNA MER2_type 1 424 -2063 2236 107 10 0 chr6 157060823 157061122 -25354120 - AluSx SINE Alu -10 302 1 2240 182 64 38 chr6 157061122 157061307 -25353935 + MER44D DNA MER2_type 424 603 -2 310 241 157 0 chr6 157063890 157063973 -25351269 - MER5B DNA MER1_type -82 96 1 195 257 92 46 chr6 157063976 157064085 -25351157 - L2 LINE L2 -191 3081 2968 342 313 204 32 chr6 157065182 157065495 -25349747 + L3 LINE CR1 1192 1558 -19 313 235 0 0 chr6 157065610 157065712 -25349530 + L1ME1 LINE L1 2281 2382 -4014 1784 203 34 61 chr6 157065717 157066313 -25348929 + L1ME1 LINE L1 5624 6362 -41 1731 163 0 36 chr6 157067099 157067400 -25347842 + AluJo SINE Alu 1 290 -22 671 227 122 36 chr6 157068694 157068972 -25346270 - L2 LINE L2 -1 3312 3011 195 114 0 0 chr6 157069627 157069662 -25345580 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1760 197 72 25 chr6 157069868 157070310 -25344932 - MLT1C LTR MaLR -4 463 1 2143 121 0 3 chr6 157071046 157071344 -25343898 - AluSx SINE Alu -15 297 1 23 33 0 0 chr6 157072034 157072064 -25343178 + AT_rich Low_complexity Low_complexity 1 30 0 2311 112 0 0 chr6 157073717 157074020 -25341222 - AluSg SINE Alu -7 303 1 312 211 32 21 chr6 157074859 157074954 -25340288 + MER103 DNA DNA 63 158 -8 543 195 0 0 chr6 157075115 157075238 -25340004 + (TG)n Simple_repeat Simple_repeat 2 124 0 25 51 0 0 chr6 157075928 157075967 -25339275 + AT_rich Low_complexity Low_complexity 1 39 0 337 203 140 14 chr6 157076375 157076518 -25338724 + L1ME4a LINE L1 5961 6121 0 198 0 0 0 chr6 157077158 157077180 -25338062 + (T)n Simple_repeat Simple_repeat 1 22 0 1074 203 15 31 chr6 157079433 157079592 -25335650 - MER33 DNA MER1_type -2265 320 167 1584 166 7 60 chr6 157079592 157079893 -25335349 - AluJb SINE Alu -27 285 1 1074 203 15 31 chr6 157079893 157080058 -25335184 - MER33 DNA MER1_type -2418 167 1 438 94 0 0 chr6 157080310 157080374 -25334868 + (TG)n Simple_repeat Simple_repeat 2 65 0 196 208 0 42 chr6 157080479 157080527 -25334715 + L2 LINE L2 3267 3312 -1 256 233 0 23 chr6 157080642 157080728 -25334514 + GA-rich Low_complexity Low_complexity 1 84 0 23 33 0 0 chr6 157081824 157081854 -25333388 + AT_rich Low_complexity Low_complexity 1 30 0 1584 188 29 4 chr6 157082000 157082277 -25332965 - AluJo SINE Alu -28 284 1 731 219 56 22 chr6 157082297 157082515 -25332727 - MIR SINE MIR -25 237 13 2477 75 0 0 chr6 157082975 157083269 -25331973 + AluSc SINE Alu 1 294 -15 24 32 0 0 chr6 157083515 157083546 -25331696 + AT_rich Low_complexity Low_complexity 1 31 0 3390 111 42 6 chr6 157085422 157085927 -25329315 + MER1A DNA MER1_type 1 523 -4 573 234 0 0 chr6 157085985 157086096 -25329146 + MER45A DNA AcHobo 48 158 -20 340 315 79 8 chr6 157086263 157086390 -25328852 + MER5A DNA MER1_type 54 189 0 398 336 30 60 chr6 157086833 157087101 -25328141 + MIR SINE MIR 1 260 -2 1464 177 104 3 chr6 157087389 157087705 -25327537 + MLT2C1 LTR ERVL 1 348 -49 306 0 0 0 chr6 157087726 157087760 -25327482 + (CA)n Simple_repeat Simple_repeat 2 35 0 429 76 0 0 chr6 157087760 157087826 -25327416 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 484 256 39 16 chr6 157087826 157087955 -25327287 - FRAM SINE Alu -44 132 1 24 53 0 0 chr6 157087956 157087994 -25327248 + AT_rich Low_complexity Low_complexity 1 38 0 1302 161 23 118 chr6 157087994 157088343 -25326899 - MLT1A1 LTR MaLR -12 353 38 332 283 0 11 chr6 157088427 157088519 -25326723 + L1MC4 LINE L1 6615 6705 -1337 204 176 12 24 chr6 157088528 157088613 -25326629 + (TA)n Simple_repeat Simple_repeat 1 84 0 1270 78 0 0 chr6 157088664 157088818 -25326424 - AluY SINE Alu -43 268 115 340 314 82 44 chr6 157089913 157090072 -25325170 - MIR SINE MIR -10 252 88 354 175 0 0 chr6 157090146 157090226 -25325016 + CT-rich Low_complexity Low_complexity 2 81 0 222 105 0 0 chr6 157090238 157090276 -25324966 + (CA)n Simple_repeat Simple_repeat 1 38 0 289 277 62 9 chr6 157092098 157092210 -25323032 - MIR SINE MIR -64 198 81 906 208 6 12 chr6 157092312 157092485 -25322757 + FAM SINE Alu 1 172 -3 22 35 0 0 chr6 157093142 157093171 -25322071 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 157093944 157093965 -25321277 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 27 0 0 0 chr6 157094581 157094608 -25320634 + AT_rich Low_complexity Low_complexity 1 27 0 631 181 0 47 chr6 157095055 157095182 -25320060 + FLAM_C SINE Alu 1 121 -22 274 314 113 13 chr6 157095762 157096001 -25319241 + L1 LINE L1 3529 3791 -2355 203 185 37 19 chr6 157096146 157096200 -25319042 + A-rich Low_complexity Low_complexity 1 55 0 1146 176 75 43 chr6 157096335 157096590 -25318652 + MLT1E LTR MaLR 10 272 -321 344 179 15 0 chr6 157096587 157096654 -25318588 + U4 snRNA snRNA 1 68 -77 * 1413 200 26 63 chr6 157096650 157097000 -25318242 + MLT1E LTR MaLR 257 593 0 2802 215 67 38 chr6 157097037 157098127 -25317115 - L1ME1 LINE L1 0 6235 5122 2375 249 41 35 chr6 157098124 157098479 -25316763 - L1ME1 LINE L1 -4606 1790 1439 * 2216 116 0 7 chr6 157098479 157098780 -25316462 + AluSq SINE Alu 1 299 -14 2375 249 41 35 chr6 157098780 157099484 -25315758 - L1ME1 LINE L1 -4957 1439 725 998 273 44 54 chr6 157099505 157099934 -25315308 - L1ME1 LINE L1 -5768 628 204 2208 129 0 10 chr6 157100226 157100537 -25314705 - AluSx SINE Alu -4 308 1 307 263 53 7 chr6 157100768 157100920 -25314322 + L1MC4a LINE L1 5724 5882 -1926 257 233 17 0 chr6 157101986 157102046 -25313196 + CT-rich Low_complexity Low_complexity 2 62 0 329 216 62 52 chr6 157102051 157102148 -25313094 - L2 LINE L2 -1 3312 3215 1981 135 42 3 chr6 157102809 157103097 -25312145 + AluSp SINE Alu 1 299 -14 622 243 43 0 chr6 157103153 157103293 -25311949 - MIR SINE MIR -108 154 9 496 308 84 29 chr6 157103426 157103699 -25311543 - L3 LINE CR1 -431 1146 859 484 187 148 53 chr6 157103711 157103920 -25311322 - L1ME4a LINE L1 -126 5995 5767 2359 110 0 0 chr6 157103991 157104300 -25310942 - AluSc SINE Alu 0 309 1 245 339 156 9 chr6 157104665 157104774 -25310468 - MIR SINE MIR -118 144 20 210 313 113 57 chr6 157106091 157106238 -25309004 - L2 LINE L2 -17 3255 3118 204 40 0 0 chr6 157106238 157106263 -25308979 + (CTGGGG)n Simple_repeat Simple_repeat 1 25 0 210 313 113 57 chr6 157106263 157106380 -25308862 - L2 LINE L2 -154 3118 2976 225 0 0 0 chr6 157106617 157106642 -25308600 + (A)n Simple_repeat Simple_repeat 1 25 0 1384 218 29 6 chr6 157106725 157107073 -25308169 + L1MB8 LINE L1 5823 6178 0 260 333 26 34 chr6 157107410 157107527 -25307715 + MIR3 SINE MIR 42 157 -51 2268 116 3 0 chr6 157107541 157107852 -25307390 + AluSx SINE Alu 1 312 0 242 250 0 0 chr6 157108630 157108682 -25306560 + (TA)n Simple_repeat Simple_repeat 1 52 0 2387 58 34 3 chr6 157108777 157109072 -25306170 + AluY SINE Alu 1 304 -7 546 260 97 75 chr6 157109243 157109574 -25305668 + MER102b DNA MER1_type 4 341 0 876 304 4 4 chr6 157110884 157111130 -25304112 + MIR SINE MIR 16 257 -5 304 292 8 33 chr6 157112263 157112383 -25302859 - MER103 DNA DNA -47 119 3 2358 94 0 0 chr6 157113506 157113804 -25301438 + AluSg SINE Alu 1 298 -12 319 242 44 0 chr6 157113805 157113896 -25301346 + MER103 DNA DNA 71 165 -1 715 261 65 51 chr6 157114010 157114424 -25300818 + MLT1J1 LTR MaLR 1 420 -26 2423 71 3 0 chr6 157114770 157115066 -25300176 - AluSp SINE Alu -16 297 1 1885 140 20 10 chr6 157115066 157115359 -25299883 - AluSx SINE Alu -16 296 1 382 237 41 0 chr6 157115385 157115482 -25299760 - L1ME4a LINE L1 -37 6084 5984 190 308 192 0 chr6 157115798 157115902 -25299340 + L2 LINE L2 3146 3269 -3 240 253 33 55 chr6 157116227 157116318 -25298924 + MIR3 SINE MIR 114 202 -6 343 43 0 22 chr6 157117111 157117157 -25298085 + AluY SINE Alu 9 53 -249 532 74 25 37 chr6 157117290 157117371 -25297871 + MADE1 DNA Mariner 1 80 0 1693 145 38 10 chr6 157118804 157119094 -25296148 + AluJb SINE Alu 1 298 -14 21 36 0 0 chr6 157119356 157119384 -25295858 + AT_rich Low_complexity Low_complexity 1 28 0 676 11 22 11 chr6 157119436 157119525 -25295717 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 720 192 62 73 chr6 157119534 157119711 -25295531 + MER58B DNA MER1_type 167 341 0 974 287 63 34 chr6 157121565 157122011 -25293231 - MLT1H LTR MaLR 0 549 91 273 231 192 13 chr6 157122088 157122166 -25293076 - MLT1H LTR MaLR -452 97 6 336 222 111 12 chr6 157122197 157122278 -25292964 - MIR3 SINE MIR -4 204 116 2822 252 96 87 chr6 157122417 157123292 -25291950 + L1MC4 LINE L1 5609 6475 -1567 2261 115 0 0 chr6 157123292 157123597 -25291645 + AluSx SINE Alu 1 305 -7 2822 252 96 87 chr6 157123597 157123924 -25291318 + L1MC4 LINE L1 6475 6798 -1244 1720 99 4 21 chr6 157123924 157124157 -25291085 - MER30 DNA MER1_type 0 230 2 2822 252 96 87 chr6 157124157 157124210 -25291032 + L1MC4 LINE L1 6798 6849 -1193 204 40 0 0 chr6 157124210 157124235 -25291007 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2822 252 96 87 chr6 157124235 157125288 -25289954 + L1MC4 LINE L1 6849 8041 -1 495 282 96 21 chr6 157125317 157125505 -25289737 + MIR SINE MIR 49 250 -12 6897 34 0 1 chr6 157125631 157126433 -25288809 - L1PA5 LINE L1 -1 6153 5353 9074 44 0 5 chr6 157126437 157128274 -25286968 - L1PA3 LINE L1 -3 6152 4321 2497 38 0 0 chr6 157128274 157128564 -25286678 + L1PA3 LINE L1 4040 4329 -1817 2320 84 0 26 chr6 157128564 157128872 -25286370 - AluY SINE Alu 0 311 12 294 331 159 13 chr6 157129658 157129815 -25285427 - MIR3 SINE MIR -6 202 23 2121 164 38 31 chr6 157129930 157130475 -25284767 + MLT2A2 LTR ERVL 1 554 0 180 333 154 8 chr6 157130924 157131047 -25284195 - L2 LINE L2 0 3272 3132 360 0 0 0 chr6 157131153 157131193 -25284049 + (CA)n Simple_repeat Simple_repeat 2 41 0 213 233 189 22 chr6 157131398 157131488 -25283754 - MIR3 SINE MIR -21 187 83 201 302 100 0 chr6 157133447 157133543 -25281699 - MIR SINE MIR -67 141 63 258 122 0 81 chr6 157134504 157134582 -25280660 + (CAAAA)n Simple_repeat Simple_repeat 1 71 0 369 0 0 0 chr6 157134656 157134697 -25280545 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1819 191 14 33 chr6 157134941 157135302 -25279940 + MLT1A1 LTR MaLR 1 354 -11 14094 178 17 5 chr6 157135565 157138940 -25276302 - L1PA14 LINE L1 0 6161 2747 183 328 137 8 chr6 157139127 157139258 -25275984 - MIR3 SINE MIR -21 187 40 2258 250 78 2 chr6 157139277 157139914 -25275328 - MER20B DNA MER1_type 0 783 98 2208 144 29 0 chr6 157139917 157140292 -25274950 - MST-int LTR MaLR -1263 388 3 238 83 28 0 chr6 157140292 157140328 -25274914 - MLT2C1 LTR ERVL -4 393 357 1941 154 61 143 chr6 157140364 157140924 -25274318 - MLT2B3 LTR ERVL -40 514 1 193 321 52 45 chr6 157142029 157142163 -25273079 - MIR SINE MIR -98 164 30 459 0 0 0 chr6 157142467 157142518 -25272724 + (TG)n Simple_repeat Simple_repeat 2 52 0 368 295 92 40 chr6 157143363 157143536 -25271706 + MIR3 SINE MIR 24 205 -3 3246 142 40 98 chr6 157144238 157144922 -25270320 + MER73 LTR ERVL 1 644 0 2857 120 23 35 chr6 157146103 157146536 -25268706 - MSTA LTR MaLR 0 428 1 364 352 55 21 chr6 157148228 157148373 -25266869 - L2 LINE L2 -2 3270 3121 2602 219 92 44 chr6 157148707 157149457 -25265785 - MER21B LTR ERV1 -69 794 9 23 0 0 0 chr6 157149688 157149711 -25265531 + AT_rich Low_complexity Low_complexity 1 23 0 384 275 162 7 chr6 157149810 157149952 -25265290 - L2 LINE L2 -192 3080 2917 502 254 249 10 chr6 157150114 157150307 -25264935 - MLT1E LTR MaLR -354 239 1 2196 120 3 0 chr6 157150559 157150851 -25264391 + AluSx SINE Alu 1 293 -19 219 36 0 0 chr6 157151727 157151755 -25263487 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2303 81 0 17 chr6 157151758 157152055 -25263187 - AluSg SINE Alu -18 292 1 2032 110 37 23 chr6 157152699 157152999 -25262243 - AluSx SINE Alu -8 304 1 180 0 0 0 chr6 157153394 157153414 -25261828 + (TCC)n Simple_repeat Simple_repeat 3 22 0 308 208 0 78 chr6 157154061 157154104 -25261138 + LTR16B LTR ERVL 394 430 -34 2185 111 84 26 chr6 157154104 157154448 -25260794 - THE1B LTR MaLR 0 364 1 308 208 0 78 chr6 157154448 157154481 -25260761 + LTR16B LTR ERVL 430 464 0 1363 190 11 25 chr6 157154560 157154834 -25260408 - MLT1C LTR MaLR -2 465 196 238 354 39 23 chr6 157156160 157156290 -25258952 + L2 LINE L2 3182 3313 0 2612 51 0 6 chr6 157156563 157156876 -25258366 - AluY SINE Alu 0 311 1 339 130 0 0 chr6 157159572 157159626 -25255616 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 799 256 65 17 chr6 157160093 157160323 -25254919 + MIR SINE MIR 22 262 0 1870 256 233 26 chr6 157160350 157161206 -25254036 + L2 LINE L2 1809 2487 -826 2299 106 33 0 chr6 157161206 157161508 -25253734 - AluSx SINE Alu 0 312 1 1870 256 233 26 chr6 157161508 157161899 -25253343 + L2 LINE L2 2487 3313 0 2091 159 42 24 chr6 157161985 157162368 -25252874 + MLT1B LTR MaLR 1 390 0 1467 209 106 60 chr6 157162609 157162866 -25252376 - L1MC5 LINE L1 -430 7531 7287 1718 175 29 0 chr6 157162866 157163167 -25252075 - AluSx SINE Alu 0 309 1 1467 209 106 60 chr6 157163167 157163471 -25251771 - L1MC5 LINE L1 -674 7287 6942 548 342 111 63 chr6 157163753 157164404 -25250838 - L2 LINE L2 -3 3269 2594 455 352 39 13 chr6 157164465 157164698 -25250544 - MIR SINE MIR -15 247 9 252 316 40 88 chr6 157164731 157165003 -25250239 + MIR SINE MIR 1 259 -3 2313 113 0 0 chr6 157165621 157165922 -25249320 + AluSx SINE Alu 1 301 -11 1078 130 0 0 chr6 157167016 157167170 -25248072 + AluSg/x SINE Alu 135 288 -24 3189 264 110 25 chr6 157167373 157168610 -25246632 + L1MCc LINE L1 17 1358 -5065 7806 20 0 0 chr6 157169565 157170612 -25244630 + L1PA3 LINE L1 5109 6155 0 195 320 72 0 chr6 157171353 157171450 -25243792 - MIR SINE MIR -6 256 153 248 253 22 33 chr6 157171515 157171606 -25243636 - MARNA DNA Mariner -62 524 435 740 207 103 10 chr6 157171746 157171949 -25243293 + L1M4 LINE L1 4632 4853 -1293 6325 166 105 69 chr6 157172176 157172589 -25242653 - L1MC3 LINE L1 -169 7616 7219 236 299 35 0 chr6 157172589 157172676 -25242566 - MLT1F1 LTR MaLR -433 134 45 6325 166 105 69 chr6 157172676 157173877 -25241365 - L1MC3 LINE L1 -566 7219 5856 4806 141 89 19 chr6 157173883 157174353 -25240889 - Ricksha_b DNA DNA -1607 1247 811 2059 105 25 7 chr6 157174353 157174664 -25240578 - AluSx SINE Alu 0 316 1 4806 141 89 19 chr6 157174664 157174829 -25240413 - Ricksha_b DNA DNA -2043 811 659 886 18 9 9 chr6 157174829 157174942 -25240300 + (GA)n Simple_repeat Simple_repeat 2 114 0 4806 141 89 19 chr6 157174942 157175247 -25239995 - Ricksha_b DNA DNA -2195 659 239 584 227 33 0 chr6 157175239 157175389 -25239853 - Ricksha_a DNA DNA -1025 156 2 * 2003 195 60 0 chr6 157175391 157175826 -25239416 - L1MC3 LINE L1 -1921 5864 5404 1602 184 65 18 chr6 157175818 157176205 -25239037 + L1MC3 LINE L1 7375 7779 -6 * 369 0 0 0 chr6 157176355 157176396 -25238846 + (TG)n Simple_repeat Simple_repeat 2 42 0 573 253 0 38 chr6 157176396 157176554 -25238688 - FRAM SINE Alu -13 153 2 2232 74 7 3 chr6 157176561 157176873 -25238369 - AluY SINE Alu 0 313 1 21 0 0 0 chr6 157179997 157180018 -25235224 + AT_rich Low_complexity Low_complexity 1 21 0 1915 143 0 17 chr6 157181976 157182263 -25232979 + AluSx SINE Alu 1 282 -30 21 36 0 0 chr6 157182384 157182412 -25232830 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr6 157183862 157183902 -25231340 + (TG)n Simple_repeat Simple_repeat 1 40 0 603 242 33 0 chr6 157183956 157184117 -25231125 - MIR SINE MIR -48 214 51 1220 154 41 55 chr6 157184299 157184519 -25230723 + AluJb SINE Alu 84 300 -12 24 53 0 0 chr6 157184921 157184959 -25230283 + AT_rich Low_complexity Low_complexity 1 38 0 2163 121 0 23 chr6 157185167 157185473 -25229769 + AluSx SINE Alu 1 299 -13 1156 92 0 0 chr6 157186034 157186176 -25229066 + AluSg/x SINE Alu 156 297 -15 218 205 0 0 chr6 157186495 157186534 -25228708 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 250 293 254 5 chr6 157186826 157187031 -25228211 - L2 LINE L2 -46 3267 3012 1222 265 52 45 chr6 157187050 157187495 -25227747 - L2 LINE L2 -780 2534 2087 2783 170 122 11 chr6 157187495 157188159 -25227083 + L1MB4 LINE L1 5434 6171 -9 399 237 138 0 chr6 157188173 157188325 -25226917 - L2 LINE L2 -1222 2092 1920 567 302 65 9 chr6 157189686 157189901 -25225341 - MIR SINE MIR -5 257 31 842 229 20 71 chr6 157190227 157190480 -25224762 - MIR SINE MIR -2 260 21 369 200 0 0 chr6 157190871 157190936 -25224306 - MER2 DNA MER2_type -1 344 280 24 67 0 0 chr6 157190936 157190981 -25224261 + AT_rich Low_complexity Low_complexity 1 45 0 1289 146 5 0 chr6 157191106 157191312 -25223930 - MER2 DNA MER2_type -138 207 1 913 197 9 52 chr6 157191374 157191532 -25223710 + MLT1A1 LTR MaLR 1 147 -218 1951 153 3 7 chr6 157191532 157191826 -25223416 + AluJb SINE Alu 1 293 -19 913 197 9 52 chr6 157191826 157191900 -25223342 + MLT1A1 LTR MaLR 147 223 -142 1403 209 15 32 chr6 157191907 157192246 -25222996 + MLT1A1 LTR MaLR 33 365 0 222 312 37 18 chr6 157192276 157192385 -25222857 - MIR SINE MIR -60 148 38 1923 150 2 89 chr6 157192793 157193220 -25222022 + MLT1B LTR MaLR 1 390 0 211 214 0 0 chr6 157193708 157193750 -25221492 - L2 LINE L2 -5 3308 3267 22 0 0 0 chr6 157194942 157194964 -25220278 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 157195402 157195424 -25219818 + AT_rich Low_complexity Low_complexity 1 22 0 251 331 31 16 chr6 157196443 157196570 -25218672 - MIR SINE MIR 0 262 134 2257 93 3 0 chr6 157196583 157196872 -25218370 + AluSx SINE Alu 4 293 -19 783 132 53 0 chr6 157196876 157197028 -25218214 + L1MA7 LINE L1 6132 6291 0 247 191 0 0 chr6 157197049 157197091 -25218151 + MIR SINE MIR 204 245 -17 2387 109 0 0 chr6 157197146 157197458 -25217784 - AluSx SINE Alu 0 312 1 482 261 92 0 chr6 157197609 157197804 -25217438 - HAL1 LINE L1 -2 2505 2293 1464 178 72 33 chr6 157197902 157198234 -25217008 - MLT1A2 LTR MaLR -29 345 1 586 248 165 43 chr6 157198235 157198489 -25216753 + LTR16A LTR ERVL 160 444 -6 1179 265 126 39 chr6 157198533 157199734 -25215508 - HAL1 LINE L1 -286 2221 917 283 327 59 40 chr6 157200072 157200274 -25214968 - HAL1 LINE L1 -2301 206 1 344 181 181 43 chr6 157201703 157201803 -25213439 - MER96B DNA MER1_type? -4 413 294 2289 51 0 7 chr6 157201803 157202077 -25213165 + AluY SINE Alu 12 283 -28 344 181 181 43 chr6 157202077 157202092 -25213150 - MER96B DNA MER1_type? -123 294 282 381 160 170 0 chr6 157202100 157202194 -25213048 + L1MC3 LINE L1 7509 7618 -167 383 136 18 109 chr6 157202198 157202212 -25213030 + MER96B DNA MER1_type? 131 145 -272 2301 97 0 13 chr6 157202212 157202521 -25212721 + AluSg SINE Alu 1 305 -5 383 136 18 109 chr6 157202521 157202616 -25212626 + MER96B DNA MER1_type? 145 230 -187 353 320 100 27 chr6 157202902 157203052 -25212190 + MIR3 SINE MIR 15 175 -33 1525 162 36 26 chr6 157203175 157203484 -25211758 + AluSx SINE Alu 1 312 0 1707 259 289 14 chr6 157203487 157204339 -25210903 - L2 LINE L2 -420 2894 1809 802 261 65 17 chr6 157204366 157204596 -25210646 - MIR SINE MIR 0 262 22 339 130 0 0 chr6 157205063 157205117 -25210125 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 2508 65 10 0 chr6 157207813 157208121 -25207121 + AluY SINE Alu 1 311 0 22 0 0 0 chr6 157208494 157208516 -25206726 + AT_rich Low_complexity Low_complexity 1 22 0 2036 94 11 3 chr6 157210543 157210829 -25204413 - AluSg SINE Alu -22 288 1 21 57 0 0 chr6 157212589 157212624 -25202618 + AT_rich Low_complexity Low_complexity 1 35 0 256 284 26 17 chr6 157212849 157212965 -25202277 - L1MC4a LINE L1 -1893 5915 5799 11384 122 17 15 chr6 157213038 157213155 -25202087 - Tigger1 DNA MER2_type 0 2418 2303 1989 107 62 7 chr6 157213155 157213444 -25201798 + AluSx SINE Alu 1 305 -7 11384 122 17 15 chr6 157213444 157214011 -25201231 - Tigger1 DNA MER2_type -115 2303 1739 2177 131 0 10 chr6 157214011 157214324 -25200918 - AluSx SINE Alu -2 310 1 11384 122 17 15 chr6 157214324 157216033 -25199209 - Tigger1 DNA MER2_type -679 1739 1 323 319 78 14 chr6 157216054 157216195 -25199047 - L1MC4a LINE L1 -460 5661 5512 432 244 98 26 chr6 157216484 157216791 -25198451 - L1MC4a LINE L1 -1439 4707 4379 312 258 83 25 chr6 157217024 157217144 -25198098 - L1MC4a LINE L1 -1909 5899 5773 358 206 135 95 chr6 157217145 157217397 -25197845 - HAL1 LINE L1 -3 2504 2243 180 0 0 0 chr6 157217449 157217469 -25197773 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 306 246 39 39 chr6 157217575 157217705 -25197537 - L1MC4a LINE L1 -1944 4202 4073 2263 92 0 0 chr6 157217811 157218105 -25197137 - AluY SINE Alu -17 294 1 281 345 17 0 chr6 157219555 157219674 -25195568 - MER117 DNA MER1_type -47 150 30 198 341 67 52 chr6 157220760 157220895 -25194347 - L2 LINE L2 -9 3263 3127 759 235 43 99 chr6 157220928 157221252 -25193990 + L2 LINE L2 2990 3295 -18 195 42 0 0 chr6 157221418 157221442 -25193800 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 759 160 7 7 chr6 157223377 157223527 -25191715 - L1MA10 LINE L1 0 6334 6185 247 193 0 0 chr6 157223528 157223593 -25191649 - L1ME LINE L1 -322 5914 5852 3745 252 94 14 chr6 157223627 157225779 -25189463 - L1ME LINE L1 -376 5859 3524 3579 251 19 22 chr6 157225828 157226969 -25188273 - L1ME LINE L1 -5224 1172 35 617 212 103 0 chr6 157227909 157228074 -25187168 - Charlie1 DNA MER1_type -1 2760 2579 180 200 0 0 chr6 157228121 157228161 -25187081 + CT-rich Low_complexity Low_complexity 3 42 0 731 266 80 0 chr6 157228240 157228466 -25186776 - Charlie1a DNA MER1_type -1210 245 2 21 57 0 0 chr6 157228485 157228520 -25186722 + AT_rich Low_complexity Low_complexity 1 35 0 1805 258 61 36 chr6 157228551 157229308 -25185934 - L1ME3A LINE L1 -9 6579 5804 4614 182 25 27 chr6 157229315 157229777 -25185465 - Tigger6a DNA MER2_type -514 1083 622 1957 125 84 0 chr6 157229777 157230064 -25185178 - AluSx SINE Alu -1 311 1 4614 182 25 27 chr6 157230064 157230615 -25184627 - Tigger6a DNA MER2_type -975 622 72 946 304 68 15 chr6 157230659 157231317 -25183925 - L1ME3A LINE L1 -763 5801 5109 498 69 0 0 chr6 157231474 157231546 -25183696 - L1PA7 LINE L1 0 6154 6083 265 234 31 39 chr6 157231559 157231687 -25183555 - L1ME3A LINE L1 -1471 5093 4967 216 97 0 0 chr6 157231822 157231853 -25183389 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1614 166 42 8 chr6 157231865 157232130 -25183112 - AluJb SINE Alu -4 308 35 304 243 120 82 chr6 157232211 157232719 -25182523 - L1MEc LINE L1 -4281 2284 1500 311 214 101 82 chr6 157232793 157232952 -25182290 - L1MEc LINE L1 -4963 1082 921 282 289 109 0 chr6 157233973 157234101 -25181141 + MIR SINE MIR 75 216 -46 22 35 0 0 chr6 157234921 157234950 -25180292 + AT_rich Low_complexity Low_complexity 1 29 0 1813 121 48 0 chr6 157234970 157235262 -25179980 + AluSx SINE Alu 1 305 0 287 240 53 13 chr6 157235345 157235420 -25179822 + MIR3 SINE MIR 82 159 -49 1992 141 3 0 chr6 157235602 157235885 -25179357 - AluSp SINE Alu -29 284 1 243 336 71 40 chr6 157236146 157236399 -25178843 + MARNA DNA Mariner 91 351 -235 180 0 0 0 chr6 157236566 157236586 -25178656 + (CA)n Simple_repeat Simple_repeat 2 21 0 208 369 25 33 chr6 157236777 157236899 -25178343 - L3b LINE CR1 -127 1456 1336 2293 83 7 10 chr6 157238275 157238565 -25176677 + AluSx SINE Alu 1 289 -23 1653 155 4 0 chr6 157239161 157239413 -25175829 + AluJo SINE Alu 36 288 -24 334 268 65 57 chr6 157240199 157240322 -25174920 - L2 LINE L2 0 3272 3149 217 296 20 50 chr6 157241255 157241370 -25173872 + MIR SINE MIR 48 162 -46 784 196 89 0 chr6 157241525 157241704 -25173538 - MLT1A1 LTR MaLR -46 319 125 904 107 0 20 chr6 157241708 157241857 -25173385 - LOR1a LTR ERV1 0 497 352 1296 217 27 7 chr6 157242222 157242492 -25172750 - LOR1b LTR ERV1 -155 306 28 2172 144 0 12 chr6 157242492 157242831 -25172411 - MER1B DNA MER1_type 0 337 3 1296 217 27 7 chr6 157242831 157242860 -25172382 - LOR1b LTR ERV1 -433 28 1 478 226 52 0 chr6 157242860 157242975 -25172267 - MLT1A1 LTR MaLR -241 124 4 222 321 19 66 chr6 157242978 157243084 -25172158 + L2 LINE L2 2942 3042 -230 442 268 119 83 chr6 157243204 157243648 -25171594 - L2 LINE L2 -4 3268 2809 251 175 0 113 chr6 157243793 157243873 -25171369 + L2 LINE L2 3202 3272 0 187 182 36 91 chr6 157244860 157244915 -25170327 - MIR3 SINE MIR -39 169 118 27 29 0 0 chr6 157245846 157245880 -25169362 + AT_rich Low_complexity Low_complexity 1 34 0 1857 121 9 71 chr6 157245942 157246265 -25168977 + AluSx SINE Alu 1 303 -9 2435 94 51 11 chr6 157246573 157246923 -25168319 - THE1B LTR MaLR 0 364 1 207 114 0 0 chr6 157247401 157247436 -25167806 + (TG)n Simple_repeat Simple_repeat 2 36 0 2332 100 0 13 chr6 157247651 157247961 -25167281 - AluSx SINE Alu -6 306 1 2368 100 0 0 chr6 157248474 157248784 -25166458 - AluY SINE Alu -1 310 1 2234 100 3 19 chr6 157250807 157251117 -25164125 - AluSq SINE Alu -8 305 1 838 208 159 10 chr6 157251155 157251362 -25163880 - MER8 DNA MER2_type -1 238 1 204 318 143 16 chr6 157252586 157252635 -25162607 + MIR SINE MIR 109 150 -112 1972 128 21 97 chr6 157252635 157253057 -25162185 + MLT1B LTR MaLR 1 390 0 204 318 143 16 chr6 157253057 157253133 -25162109 + MIR SINE MIR 150 250 -12 319 321 169 32 chr6 157254385 157254855 -25160387 + L2 LINE L2 2568 3105 -167 2796 182 15 18 chr6 157254886 157255430 -25159812 + MER44D DNA MER2_type 8 604 -1 225 319 66 0 chr6 157255434 157255525 -25159717 + L2 LINE L2 3172 3268 -45 572 118 31 16 chr6 157255549 157255676 -25159566 + GA-rich Low_complexity Low_complexity 2 130 0 472 273 29 41 chr6 157255767 157255939 -25159303 - MIR SINE MIR -71 191 22 21 36 0 0 chr6 157256661 157256689 -25158553 + AT_rich Low_complexity Low_complexity 1 28 0 323 315 45 18 chr6 157256941 157257052 -25158190 - MIR3 SINE MIR -14 194 81 1300 184 31 96 chr6 157257076 157257463 -25157779 + MLT1A2 LTR MaLR 1 362 -12 199 400 0 0 chr6 157257572 157257642 -25157600 - MIR SINE MIR -109 99 30 524 306 65 33 chr6 157257888 157258133 -25157109 - MER70A LTR ERVL -208 264 12 234 182 26 13 chr6 157258404 157258481 -25156761 + CT-rich Low_complexity Low_complexity 3 80 0 239 269 161 21 chr6 157259278 157259371 -25155871 + MER5A DNA MER1_type 1 106 -83 8079 171 90 20 chr6 157259676 157261315 -25153927 - MER52A LTR ERV1 0 1755 3 327 277 120 33 chr6 157261547 157261731 -25153511 + L2 LINE L2 2646 2845 -469 326 286 22 0 chr6 157261710 157261801 -25153441 + L2 LINE L2 3180 3272 0 * 1358 95 33 47 chr6 157262234 157262477 -25152765 + AluSg/x SINE Alu 80 319 0 2282 110 0 0 chr6 157263280 157263580 -25151662 - AluSx SINE Alu -12 300 1 2286 50 0 7 chr6 157264786 157265065 -25150177 + AluY SINE Alu 18 294 -17 7822 16 0 0 chr6 157265288 157266334 -25148908 - L1PA3 LINE L1 -3 6152 5109 3189 264 110 25 chr6 157267288 157268525 -25146717 - L1MCc LINE L1 -5065 1358 17 1078 130 0 0 chr6 157268728 157268882 -25146360 - AluSg/x SINE Alu -24 288 135 2313 113 0 0 chr6 157269976 157270277 -25144965 - AluSx SINE Alu -11 301 1 252 316 40 88 chr6 157270895 157271167 -25144075 - MIR SINE MIR -3 259 1 455 352 39 13 chr6 157271200 157271433 -25143809 + MIR SINE MIR 9 247 -15 548 342 109 63 chr6 157271494 157272146 -25143096 + L2 LINE L2 2594 3269 -3 1217 210 103 62 chr6 157272440 157272732 -25142510 + L1MC5 LINE L1 6957 7235 -726 1735 175 29 0 chr6 157272732 157273033 -25142209 + AluSx SINE Alu 1 309 0 1217 210 103 62 chr6 157273033 157273290 -25141952 + L1MC5 LINE L1 7235 7531 -430 1908 159 42 24 chr6 157273531 157273914 -25141328 - MLT1B LTR MaLR 0 390 1 1873 256 230 33 chr6 157274000 157274396 -25140846 - L2 LINE L2 0 3313 2997 2306 101 34 0 chr6 157274396 157274694 -25140548 + AluSx SINE Alu 5 312 0 1873 256 230 33 chr6 157274694 157275549 -25139693 - L2 LINE L2 -316 2997 1809 802 261 65 17 chr6 157275576 157275806 -25139436 - MIR SINE MIR 0 262 22 339 130 0 0 chr6 157276273 157276327 -25138915 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 2508 65 10 0 chr6 157279023 157279331 -25135911 + AluY SINE Alu 1 311 0 218 195 24 0 chr6 157279380 157279421 -25135821 + L2 LINE L2 3229 3270 -2 412 262 99 47 chr6 157280459 157280650 -25134592 + MIR SINE MIR 30 230 -32 846 265 36 9 chr6 157280650 157280869 -25134373 + MIR SINE MIR 17 241 -21 257 170 75 21 chr6 157281654 157281748 -25133494 + (TA)n Simple_repeat Simple_repeat 1 99 0 252 0 0 0 chr6 157282261 157282289 -25132953 + (T)n Simple_repeat Simple_repeat 1 28 0 3073 141 23 9 chr6 157282605 157283137 -25132105 - LTR38 LTR ERV1 -17 539 1 363 206 0 20 chr6 157283368 157283470 -25131772 - Charlie8 DNA MER1_type -2246 171 72 1854 160 3 10 chr6 157283901 157284201 -25131041 + AluJb SINE Alu 1 298 -14 226 26 51 26 chr6 157284383 157284422 -25130820 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 2069 129 0 0 chr6 157284426 157284705 -25130537 - AluSg SINE Alu -31 279 1 217 261 0 15 chr6 157284884 157284949 -25130293 + MER5B DNA MER1_type 94 157 -21 23 54 0 0 chr6 157285318 157285355 -25129887 + AT_rich Low_complexity Low_complexity 1 37 0 275 65 22 0 chr6 157286824 157286870 -25128372 + (TG)n Simple_repeat Simple_repeat 1 47 0 2328 82 14 0 chr6 157287812 157288104 -25127138 + AluY SINE Alu 1 296 -15 219 347 0 27 chr6 157288599 157288674 -25126568 - MIR SINE MIR -147 115 43 690 221 108 9 chr6 157288743 157288929 -25126313 + MIR SINE MIR 48 249 -13 718 242 50 78 chr6 157289091 157289202 -25126040 + L1MC5 LINE L1 7420 7533 -428 2278 95 0 0 chr6 157289202 157289520 -25125722 + AluSx SINE Alu 1 318 0 718 242 50 78 chr6 157289520 157289931 -25125311 + L1MC5 LINE L1 7533 7929 -32 381 190 51 0 chr6 157290004 157290083 -25125159 - MIR SINE MIR -51 211 129 538 216 0 0 chr6 157290353 157290464 -25124778 - AluJb SINE Alu 0 312 202 1170 134 0 0 chr6 157290464 157290628 -25124614 - AluSx SINE Alu -148 164 1 419 345 162 24 chr6 157291202 157291541 -25123701 + L3 LINE CR1 69 454 -1123 213 292 247 11 chr6 157291635 157291813 -25123429 + L3 LINE CR1 1084 1303 -274 1279 152 19 14 chr6 157292106 157292316 -25122926 - AluSg/x SINE Alu -18 294 84 794 281 31 5 chr6 157292875 157293099 -25122143 + MIR SINE MIR 32 261 -1 218 267 33 0 chr6 157293227 157293287 -25121955 + GA-rich Low_complexity Low_complexity 1 62 0 2234 130 0 0 chr6 157293744 157294051 -25121191 - AluSg SINE Alu -3 307 1 1925 139 13 0 chr6 157295226 157295529 -25119713 + AluSx SINE Alu 1 307 -5 288 238 143 38 chr6 157295536 157295641 -25119601 - MER5A DNA MER1_type -58 131 16 1053 266 102 50 chr6 157295646 157296067 -25119175 + L2 LINE L2 2871 3313 0 6795 123 12 13 chr6 157297999 157299957 -25115285 - L1MA1 LINE L1 -2 6300 4337 238 326 67 0 chr6 157301199 157301288 -25113954 + MIR3 SINE MIR 92 186 -22 208 355 57 53 chr6 157303152 157303397 -25111845 + L2 LINE L2 2616 2861 -453 221 156 52 0 chr6 157304122 157304199 -25111043 + (TA)n Simple_repeat Simple_repeat 1 81 0 23 33 0 0 chr6 157306111 157306141 -25109101 + AT_rich Low_complexity Low_complexity 1 30 0 2183 122 3 0 chr6 157306296 157306599 -25108643 - AluSx SINE Alu -8 304 1 2093 120 24 0 chr6 157306794 157307085 -25108157 - AluSx SINE Alu -14 298 1 353 320 100 27 chr6 157307208 157307358 -25107884 - MIR3 SINE MIR -33 175 15 383 136 18 109 chr6 157307644 157307739 -25107503 - MER96B DNA MER1_type? -187 230 145 2301 97 0 13 chr6 157307739 157308048 -25107194 - AluSg SINE Alu -5 305 1 383 136 18 109 chr6 157308048 157308062 -25107180 - MER96B DNA MER1_type? -272 145 131 381 160 170 0 chr6 157308066 157308160 -25107082 - L1MC3 LINE L1 -167 7618 7509 344 181 181 43 chr6 157308168 157308183 -25107059 + MER96B DNA MER1_type? 282 294 -123 2289 51 0 7 chr6 157308183 157308457 -25106785 - AluY SINE Alu -28 283 12 344 181 181 43 chr6 157308457 157308557 -25106685 + MER96B DNA MER1_type? 294 413 -4 283 327 59 40 chr6 157309986 157310188 -25105054 + HAL1 LINE L1 1 206 -2301 1179 265 126 39 chr6 157310526 157311727 -25103515 + HAL1 LINE L1 917 2221 -286 586 248 165 43 chr6 157311771 157312025 -25103217 - LTR16A LTR ERVL -6 444 160 1464 178 72 33 chr6 157312026 157312358 -25102884 + MLT1A2 LTR MaLR 1 345 -29 482 261 92 0 chr6 157312456 157312651 -25102591 + HAL1 LINE L1 2293 2505 -2 2387 109 0 0 chr6 157312802 157313114 -25102128 + AluSx SINE Alu 1 312 0 247 191 0 0 chr6 157313169 157313211 -25102031 - MIR SINE MIR -17 245 204 746 133 60 0 chr6 157313232 157313383 -25101859 - L1MA7 LINE L1 0 6291 6132 2198 91 11 0 chr6 157313387 157313674 -25101568 - AluSx SINE Alu -19 293 4 251 331 31 16 chr6 157313687 157313814 -25101428 + MIR SINE MIR 134 262 0 22 0 0 0 chr6 157314833 157314855 -25100387 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 157315293 157315315 -25099927 + AT_rich Low_complexity Low_complexity 1 22 0 211 214 0 0 chr6 157316507 157316549 -25098693 + L2 LINE L2 3267 3308 -5 1923 150 2 89 chr6 157317037 157317464 -25097778 - MLT1B LTR MaLR 0 390 1 222 312 37 18 chr6 157317871 157317980 -25097262 + MIR SINE MIR 38 148 -60 1403 209 15 32 chr6 157318010 157318349 -25096893 - MLT1A1 LTR MaLR 0 365 33 898 195 13 48 chr6 157318356 157318428 -25096814 - MLT1A1 LTR MaLR -142 223 150 1951 153 3 7 chr6 157318428 157318722 -25096520 - AluJb SINE Alu -19 293 1 898 195 13 48 chr6 157318722 157318880 -25096362 - MLT1A1 LTR MaLR -215 150 1 1289 146 5 0 chr6 157318942 157319148 -25096094 + MER2 DNA MER2_type 1 207 -138 24 67 0 0 chr6 157319273 157319318 -25095924 + AT_rich Low_complexity Low_complexity 1 45 0 369 200 0 0 chr6 157319318 157319383 -25095859 + MER2 DNA MER2_type 280 344 -1 842 229 20 71 chr6 157319774 157320027 -25095215 + MIR SINE MIR 21 260 -2 567 302 65 9 chr6 157320353 157320568 -25094674 + MIR SINE MIR 31 257 -5 399 237 138 0 chr6 157321929 157322081 -25093161 + L2 LINE L2 1920 2092 -1222 2783 170 122 11 chr6 157322095 157322759 -25092483 - L1MB4 LINE L1 -9 6171 5434 1222 265 52 45 chr6 157322759 157323204 -25092038 + L2 LINE L2 2087 2534 -780 250 293 254 5 chr6 157323223 157323428 -25091814 + L2 LINE L2 3012 3267 -46 218 205 0 0 chr6 157323720 157323759 -25091483 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 1165 91 0 0 chr6 157324078 157324221 -25091021 - AluSg/x SINE Alu -14 298 156 2163 121 0 23 chr6 157324782 157325088 -25090154 - AluSx SINE Alu -13 299 1 24 53 0 0 chr6 157325296 157325334 -25089908 + AT_rich Low_complexity Low_complexity 1 38 0 1220 154 41 55 chr6 157325736 157325956 -25089286 - AluJb SINE Alu -12 300 84 603 242 33 0 chr6 157326138 157326299 -25088943 + MIR SINE MIR 51 214 -48 360 0 0 0 chr6 157326353 157326393 -25088849 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr6 157327843 157327871 -25087371 + AT_rich Low_complexity Low_complexity 1 28 0 1915 143 0 17 chr6 157327992 157328279 -25086963 - AluSx SINE Alu -30 282 1 21 0 0 0 chr6 157330237 157330258 -25084984 + AT_rich Low_complexity Low_complexity 1 21 0 2233 74 7 3 chr6 157333383 157333695 -25081547 + AluY SINE Alu 1 313 0 573 253 0 38 chr6 157333702 157333860 -25081382 + FRAM SINE Alu 2 153 -13 369 0 0 0 chr6 157333860 157333901 -25081341 + (CA)n Simple_repeat Simple_repeat 2 42 0 1551 189 67 18 chr6 157334051 157334437 -25080805 - L1MC3 LINE L1 -6 7779 7375 * 2003 195 60 0 chr6 157334429 157334864 -25080378 + L1MC3 LINE L1 5404 5864 -1921 584 227 33 0 chr6 157334866 157335016 -25080226 + Ricksha_a DNA DNA 2 156 -1025 * 4799 138 88 29 chr6 157335008 157335313 -25079929 + Ricksha_b DNA DNA 239 525 -2329 901 17 17 0 chr6 157335313 157335428 -25079814 + (TC)n Simple_repeat Simple_repeat 2 118 0 4799 138 88 29 chr6 157335428 157335593 -25079649 + Ricksha_b DNA DNA 525 679 -2175 2060 105 25 7 chr6 157335593 157335894 -25079348 + AluSx SINE Alu 1 306 0 4799 138 88 29 chr6 157335894 157336374 -25078868 + Ricksha_b DNA DNA 679 1247 -7 6325 166 105 69 chr6 157336380 157337581 -25077661 + L1MC3 LINE L1 5856 7219 -566 236 299 35 0 chr6 157337581 157337668 -25077574 + MLT1F1 LTR MaLR 45 134 -433 6325 166 105 69 chr6 157337668 157338081 -25077161 + L1MC3 LINE L1 7219 7616 -169 740 207 103 10 chr6 157338308 157338511 -25076731 - L1M4 LINE L1 -1293 4853 4632 248 253 22 33 chr6 157338651 157338742 -25076500 + MARNA DNA Mariner 435 524 -62 195 320 72 0 chr6 157338807 157338904 -25076338 + MIR SINE MIR 153 256 -6 36861 34 22 1 chr6 157339645 157345204 -25070038 - L1PA3 LINE L1 0 6155 476 22 35 0 0 chr6 157345484 157345513 -25069729 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chr6 157345548 157345607 -25069635 + AT_rich Low_complexity Low_complexity 1 59 0 195 274 113 113 chr6 157345860 157346090 -25069152 - L2 LINE L2 -3 3269 3040 301 217 14 0 chr6 157346173 157346242 -25069000 + L1ME2 LINE L1 118 187 -6209 2910 237 62 17 chr6 157346318 157347634 -25067608 + L1ME2 LINE L1 4838 6231 -2 459 0 0 0 chr6 157347713 157347764 -25067478 + (TG)n Simple_repeat Simple_repeat 2 52 0 267 372 112 0 chr6 157347860 157348102 -25067140 + L2 LINE L2 2489 2757 -557 314 403 70 0 chr6 157348156 157348357 -25066885 - MIR SINE MIR -25 237 23 1791 140 13 10 chr6 157348533 157348841 -25066401 + AluY SINE Alu 3 311 0 189 244 24 0 chr6 157348891 157348932 -25066310 + L2 LINE L2 3229 3270 -2 396 267 99 47 chr6 157349970 157350161 -25065081 + MIR SINE MIR 30 230 -32 593 296 6 11 chr6 157350170 157350346 -25064896 + MIR SINE MIR 33 207 -55 9684 18 0 0 chr6 157351178 157353068 -25062174 - L1PA3 LINE L1 -9 6146 4256 24 53 0 0 chr6 157353484 157353522 -25061720 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr6 157353727 157353749 -25061493 + AT_rich Low_complexity Low_complexity 1 22 0 320 244 0 0 chr6 157355892 157355970 -25059272 - L1M4 LINE L1 -5110 1432 1355 188 206 0 0 chr6 157358671 157358705 -25056537 - MIR SINE MIR -91 117 84 743 224 0 6 chr6 157358877 157359038 -25056204 - MER69A DNA AcHobo -10 167 8 228 355 73 36 chr6 157359277 157359387 -25055855 - L2 LINE L2 -79 3193 3080 2396 92 7 0 chr6 157359756 157360061 -25055181 - AluSq SINE Alu -5 308 2 3604 174 21 6 chr6 157360176 157360856 -25054386 - L1MB5 LINE L1 -1 6173 5484 4667 47 3 5 chr6 157361028 157361606 -25053636 + L1PA7 LINE L1 5577 6153 -1 2074 111 7 10 chr6 157362193 157362499 -25052743 - AluSx SINE Alu -7 305 1 1050 282 171 18 chr6 157362835 157363216 -25052026 - L3 LINE CR1 -106 1471 989 2289 115 0 0 chr6 157363216 157363521 -25051721 - AluSq SINE Alu -8 305 1 1050 282 171 18 chr6 157363521 157363654 -25051588 - L3 LINE CR1 -588 989 878 228 289 49 73 chr6 157364060 157364255 -25050987 - MIR SINE MIR -50 212 26 5902 57 21 0 chr6 157364614 157365404 -25049838 - L1PA7 LINE L1 -4 6150 5344 1717 148 60 9 chr6 157367215 157367532 -25047710 + MLT1A1 LTR MaLR 31 363 -2 263 356 0 0 chr6 157369539 157369626 -25045616 - MIR3 SINE MIR -14 194 108 501 297 38 38 chr6 157369659 157369868 -25045374 + MIR SINE MIR 23 231 -31 512 265 15 0 chr6 157372077 157372209 -25043033 + MER63 DNA MER1_type 1 760 -302 216 189 0 0 chr6 157372539 157372576 -25042666 + MIR SINE MIR 117 153 -109 344 261 121 8 chr6 157374444 157374655 -25040587 - MIR SINE MIR -1 261 20 2418 99 11 8 chr6 157375176 157375530 -25039712 + THE1A LTR MaLR 1 355 0 939 188 94 0 chr6 157375729 157375921 -25039321 - MER58B DNA MER1_type 0 341 132 243 198 10 20 chr6 157376061 157376162 -25039080 + (CA)n Simple_repeat Simple_repeat 1 100 0 335 347 20 0 chr6 157376221 157376371 -25038871 - MIR SINE MIR 0 262 110 244 298 111 47 chr6 157376567 157376738 -25038504 + L2 LINE L2 2568 2749 -565 26 0 0 0 chr6 157377918 157377944 -25037298 + AT_rich Low_complexity Low_complexity 1 26 0 327 24 0 0 chr6 157378178 157378219 -25037023 + MADE1 DNA Mariner 38 78 -2 282 56 0 0 chr6 157378410 157378446 -25036796 + (GA)n Simple_repeat Simple_repeat 1 36 0 183 42 0 0 chr6 157380385 157380409 -25034833 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 308 354 8 15 chr6 157381132 157381262 -25033980 + MER5A DNA MER1_type 61 189 0 349 253 142 86 chr6 157381489 157381918 -25033324 + L2 LINE L2 2766 3221 -92 243 88 0 0 chr6 157382158 157382192 -25033050 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 311 291 25 13 chr6 157383538 157383617 -25031625 + MIR3 SINE MIR 12 91 -117 1592 170 151 21 chr6 157384002 157384379 -25030863 - MSTA LTR MaLR -2 426 1 465 237 0 25 chr6 157384379 157384497 -25030745 - MER94 DNA DNA -16 118 4 39 22 0 0 chr6 157385336 157385382 -25029860 + AT_rich Low_complexity Low_complexity 1 46 0 1132 222 27 41 chr6 157385513 157385806 -25029436 - MLT1E2 LTR MaLR -24 602 314 1232 201 12 109 chr6 157385828 157386074 -25029168 + MLT2D LTR ERVL 1 194 -220 7031 66 6 1 chr6 157386074 157387175 -25028067 + L1PA8 LINE L1 5068 6172 0 1232 201 12 109 chr6 157387175 157387331 -25027911 + MLT2D LTR ERVL 194 364 -50 881 251 48 16 chr6 157387309 157387560 -25027682 - MLT1E2 LTR MaLR -318 308 50 * 246 192 7 60 chr6 157388866 157389017 -25026225 + GA-rich Low_complexity Low_complexity 3 145 0 542 285 131 48 chr6 157389764 157389949 -25025293 - L1M4 LINE L1 -1068 5078 4910 5463 129 10 21 chr6 157389949 157390264 -25024978 + L1PA16 LINE L1 4821 5138 -1028 2314 113 0 0 chr6 157390264 157390565 -25024677 + AluSx SINE Alu 1 301 -11 5463 129 10 21 chr6 157390565 157391600 -25023642 + L1PA16 LINE L1 5138 6156 -10 542 285 131 48 chr6 157391600 157392667 -25022575 - L1M4 LINE L1 -1236 4910 3722 1466 204 65 139 chr6 157393534 157394188 -25021054 + L1MC4a LINE L1 5879 6445 -1363 1852 189 0 0 chr6 157394188 157394484 -25020758 + AluJb SINE Alu 1 296 -16 1466 204 65 139 chr6 157394484 157394757 -25020485 + L1MC4a LINE L1 6445 6737 -1071 815 213 119 34 chr6 157394803 157395146 -25020096 - MER57A LTR ERV1 -4 399 67 2400 85 7 0 chr6 157395154 157395461 -25019781 - AluSg SINE Alu -1 309 1 767 273 108 72 chr6 157395594 157396217 -25019025 - L1MEd LINE L1 -4922 1494 834 21 36 0 0 chr6 157396636 157396664 -25018578 + AT_rich Low_complexity Low_complexity 1 28 0 459 327 33 11 chr6 157397139 157397411 -25017831 - L1ME LINE L1 -297 5824 5547 2009 95 23 43 chr6 157398793 157398848 -25016394 + L1PB1 LINE L1 5811 5866 -285 2258 90 0 0 chr6 157398848 157399147 -25016095 - AluSg SINE Alu 0 299 1 2009 95 23 43 chr6 157399147 157399438 -25015804 + L1PB1 LINE L1 5866 6151 0 284 134 0 110 chr6 157399499 157399581 -25015661 - L1PA16 LINE L1 -2 6164 6092 339 342 50 25 chr6 157399708 157399869 -25015373 - MER5A DNA MER1_type -23 166 2 24 0 0 0 chr6 157399953 157399977 -25015265 + AT_rich Low_complexity Low_complexity 1 24 0 233 306 134 45 chr6 157400422 157400690 -25014552 - L3b LINE CR1 -121 1462 1171 288 208 97 14 chr6 157400888 157400960 -25014282 + MIR3 SINE MIR 84 161 -47 329 254 23 39 chr6 157401151 157401225 -25014017 + GA-rich Low_complexity Low_complexity 1 74 -54 3522 122 41 4 chr6 157401225 157401733 -25013509 - MER1A DNA MER1_type 0 527 1 329 254 23 39 chr6 157401733 157401788 -25013454 + GA-rich Low_complexity Low_complexity 74 128 0 2472 84 0 3 chr6 157401788 157402097 -25013145 + AluSc SINE Alu 1 308 -1 2296 101 10 3 chr6 157403480 157403787 -25011455 + AluSc SINE Alu 1 309 0 296 295 21 0 chr6 157404869 157404964 -25010278 + MIR3 SINE MIR 108 204 -4 1734 167 52 27 chr6 157405496 157405862 -25009380 + THE1C LTR MaLR 1 375 0 1530 117 8 4 chr6 157405865 157406112 -25009130 + THE1C-int LTR MaLR 3 250 -1330 5046 125 5 79 chr6 157406115 157407077 -25008165 + THE1C-int LTR MaLR 690 1580 0 1697 138 53 50 chr6 157407077 157407438 -25007804 + THE1B LTR MaLR 1 362 -2 624 235 144 0 chr6 157411057 157411210 -25004032 + MER5B DNA MER1_type 2 176 -2 299 299 180 5 chr6 157411872 157412083 -25003159 + LTR16A1 LTR ERVL 159 406 -51 2740 96 0 3 chr6 157412229 157412594 -25002648 - THE1B LTR MaLR 0 364 1 322 343 45 8 chr6 157412657 157412791 -25002451 - MIR3 SINE MIR -21 187 49 221 167 0 24 chr6 157413093 157413135 -25002107 + L2 LINE L2 3227 3267 -5 267 54 0 0 chr6 157413277 157413314 -25001928 + (TG)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr6 157413660 157413682 -25001560 + AT_rich Low_complexity Low_complexity 1 22 0 215 281 24 12 chr6 157414111 157414193 -25001049 - MIR SINE MIR -6 256 174 316 306 45 15 chr6 157415026 157415160 -25000082 - MIR SINE MIR -10 252 115 1081 269 81 18 chr6 157415891 157416383 -24998859 + HsTC2 DNA Tc2 34 556 -1342 350 243 90 28 chr6 157416383 157416527 -24998715 - MLT1G1 LTR MaLR 0 542 390 664 270 64 25 chr6 157416607 157416949 -24998293 - MLT1G1 LTR MaLR -284 306 2 796 239 133 16 chr6 157416949 157417204 -24998038 + HsTC2 DNA Tc2 553 837 -1061 551 231 35 35 chr6 157417212 157417385 -24997857 + HsTC2 DNA Tc2 1726 1898 0 731 236 21 0 chr6 157417753 157417897 -24997345 - MER41D LTR ERV1 -18 539 393 * 2642 159 25 45 chr6 157417875 157418110 -24997132 - MER41D LTR ERV1 -58 499 261 367 23 0 0 chr6 157418110 157418153 -24997089 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2006 92 11 11 chr6 157418153 157418434 -24996808 - AluSx SINE Alu -30 282 2 2642 159 25 45 chr6 157418434 157418706 -24996536 - MER41D LTR ERV1 -294 263 1 200 261 0 0 chr6 157418964 157419010 -24996232 - L2 LINE L2 -19 3253 3208 378 239 54 54 chr6 157419322 157419452 -24995790 - MIR SINE MIR -50 212 83 461 307 42 5 chr6 157419604 157419793 -24995449 - L1ME1 LINE L1 -6 6160 5965 283 109 62 0 chr6 157419796 157419860 -24995382 + (CAGAGA)n Simple_repeat Simple_repeat 2 69 0 943 178 44 22 chr6 157419893 157420118 -24995124 - L1ME1 LINE L1 -272 5894 5665 709 232 5 38 chr6 157420122 157420307 -24994935 - L1ME1 LINE L1 -657 5509 5331 1512 143 63 52 chr6 157420307 157420594 -24994648 - AluSx SINE Alu -22 290 1 34 72 0 0 chr6 157420678 157420747 -24994495 + AT_rich Low_complexity Low_complexity 1 69 0 330 263 42 0 chr6 157422053 157422148 -24993094 - MIR3 SINE MIR -42 166 68 795 224 44 103 chr6 157422299 157422638 -24992604 - L2 LINE L2 -3 3310 2992 209 304 18 0 chr6 157423499 157423555 -24991687 - L2 LINE L2 -1 3271 3215 2308 99 0 0 chr6 157423633 157423927 -24991315 + AluSq SINE Alu 2 295 -18 1684 202 47 44 chr6 157424322 157424684 -24990558 + L1MD1 LINE L1 18 380 -6160 692 215 68 73 chr6 157424713 157424918 -24990324 + L1MD1 LINE L1 508 711 -5310 * 4300 234 62 45 chr6 157424914 157425476 -24989766 + L1MD1 LINE L1 2868 3419 -3121 8933 104 6 20 chr6 157425476 157426796 -24988446 + HSMAR2 DNA Mariner 1 1301 -1 4300 234 62 45 chr6 157426796 157427037 -24988205 + L1MD1 LINE L1 3419 3654 -2886 1950 170 10 77 chr6 157427037 157427455 -24987787 - MLT1B LTR MaLR 0 390 1 4300 234 62 45 chr6 157427455 157427589 -24987653 + L1MD1 LINE L1 3654 3784 -2756 2351 100 3 3 chr6 157427589 157427898 -24987344 + AluSq SINE Alu 1 309 -4 4300 234 62 45 chr6 157427898 157428560 -24986682 + L1MD1 LINE L1 3784 4496 -2044 4622 185 78 9 chr6 157428561 157429919 -24985323 + L1MD1 LINE L1 5192 6636 0 378 277 43 0 chr6 157430373 157430467 -24984775 - L2 LINE L2 0 3313 3216 2112 138 39 17 chr6 157430726 157431082 -24984160 - THE1B LTR MaLR 0 364 1 396 0 0 0 chr6 157432678 157432722 -24982520 + (CA)n Simple_repeat Simple_repeat 1 44 0 216 0 0 0 chr6 157433088 157433112 -24982130 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 157434594 157434615 -24980627 + AT_rich Low_complexity Low_complexity 1 21 0 843 295 85 25 chr6 157434877 157435314 -24979928 + Tigger8 DNA MER2_type 10 472 -194 200 297 0 0 chr6 157435348 157435412 -24979830 + (TA)n Simple_repeat Simple_repeat 1 64 0 222 250 125 38 chr6 157435850 157435930 -24979312 - MIR SINE MIR -72 136 50 325 302 141 7 chr6 157436282 157436431 -24978811 + MIR SINE MIR 20 188 -74 1581 164 0 29 chr6 157436448 157436722 -24978520 + AluJb SINE Alu 1 266 -46 1780 131 244 12 chr6 157437591 157437935 -24977307 - MSTA LTR MaLR -2 426 3 190 264 0 19 chr6 157437999 157438052 -24977190 - MER5B DNA MER1_type -109 69 18 434 267 139 5 chr6 157438266 157438453 -24976789 - L3 LINE CR1 -763 814 603 210 283 94 19 chr6 157439762 157439903 -24975339 - MIR SINE MIR -61 147 38 191 359 39 39 chr6 157440424 157440552 -24974690 + MIR SINE MIR 19 146 -62 21 36 0 0 chr6 157441665 157441693 -24973549 + AT_rich Low_complexity Low_complexity 1 28 0 343 289 92 64 chr6 157442064 157442282 -24972960 + L1MEd LINE L1 3 226 -5893 507 298 106 40 chr6 157442613 157443574 -24971668 + L1MEd LINE L1 601 1712 -4598 254 324 86 17 chr6 157443950 157444240 -24971002 + L1MEd LINE L1 2094 2403 -3726 533 304 76 47 chr6 157444341 157445028 -24970214 + L1MEd LINE L1 3197 3903 -2226 2250 196 24 74 chr6 157445542 157446125 -24969117 + MLT2B3 LTR ERVL 1 554 0 952 170 6 12 chr6 157446757 157446922 -24968320 - FRAM SINE Alu -1 165 2 2746 271 132 22 chr6 157447178 157448243 -24966999 - L2 LINE L2 -2076 1238 57 1537 168 34 112 chr6 157448482 157448900 -24966342 + MLT1B LTR MaLR 1 385 -5 795 274 192 25 chr6 157450097 157450607 -24964635 - MLT1G1 LTR MaLR 0 595 1 324 251 87 72 chr6 157450612 157450819 -24964423 - MLT1G1-int LTR MaLR -5 1366 1157 3197 81 32 30 chr6 157450819 157451288 -24963954 - MER11B LTR ERVK -766 470 1 1481 147 174 14 chr6 157451969 157452320 -24962922 + MSTA LTR MaLR 6 401 -27 10783 133 31 2 chr6 157452359 157454971 -24960271 - L1PA11 LINE L1 -5 6169 3506 2013 126 105 9 chr6 157454982 157455324 -24959918 - THE1C LTR MaLR 0 375 1 8466 105 124 42 chr6 157455324 157456785 -24958457 - THE1C-int LTR MaLR 0 1580 1 2313 104 59 8 chr6 157456785 157457142 -24958100 - THE1C LTR MaLR 0 375 1 8541 164 4 11 chr6 157457142 157457648 -24957594 - L1PA11 LINE L1 -2641 3505 2997 2420 77 6 13 chr6 157457648 157457961 -24957281 - AluSq SINE Alu -2 311 1 8541 164 4 11 chr6 157457961 157459022 -24956220 - L1PA11 LINE L1 -3149 2997 1949 2734 152 93 38 chr6 157459139 157459380 -24955862 - MER7C DNA MER2_type -2437 591 365 2422 38 0 72 chr6 157459380 157459699 -24955543 + AluY SINE Alu 1 296 -15 2734 152 93 38 chr6 157459699 157460015 -24955227 - MER7C DNA MER2_type -2663 365 3 214 259 74 0 chr6 157460884 157460938 -24954304 + MIR3 SINE MIR 151 208 0 21 36 0 0 chr6 157461334 157461362 -24953880 + AT_rich Low_complexity Low_complexity 1 28 0 2025 122 3 13 chr6 157461528 157461839 -24953403 + AluSx SINE Alu 1 308 -4 294 250 23 0 chr6 157462432 157462520 -24952722 + MER103 DNA DNA 65 154 -12 23 33 0 0 chr6 157462672 157462702 -24952540 + AT_rich Low_complexity Low_complexity 1 30 0 2128 69 7 0 chr6 157462896 157463171 -24952071 + AluY SINE Alu 35 311 0 183 42 0 0 chr6 157465584 157465608 -24949634 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 267 331 46 31 chr6 157467928 157468058 -24947184 - L2 LINE L2 0 3313 3182 39 22 0 0 chr6 157518523 157518569 -24896673 + AT_rich Low_complexity Low_complexity 1 46 0 509 237 0 25 chr6 157519408 157519526 -24895716 + MER94 DNA DNA 4 118 -16 1639 170 151 21 chr6 157519526 157519903 -24895339 + MSTA LTR MaLR 1 426 -2 296 282 39 13 chr6 157520288 157520366 -24894876 - MIR3 SINE MIR -117 91 12 243 88 0 0 chr6 157521711 157521745 -24893497 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 349 253 142 86 chr6 157521985 157522414 -24892828 - L2 LINE L2 -92 3221 2766 308 354 8 15 chr6 157522641 157522771 -24892471 - MER5A DNA MER1_type 0 189 61 183 42 0 0 chr6 157523494 157523518 -24891724 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 282 56 0 0 chr6 157525458 157525494 -24889748 + (TC)n Simple_repeat Simple_repeat 1 36 0 327 24 0 0 chr6 157525685 157525726 -24889516 - MADE1 DNA Mariner -2 78 38 26 0 0 0 chr6 157525960 157525986 -24889256 + AT_rich Low_complexity Low_complexity 1 26 0 244 298 111 47 chr6 157527166 157527337 -24887905 - L2 LINE L2 -565 2749 2568 335 347 20 0 chr6 157527533 157527683 -24887559 + MIR SINE MIR 110 262 0 243 198 10 20 chr6 157527742 157527843 -24887399 + (TG)n Simple_repeat Simple_repeat 1 100 0 939 188 94 0 chr6 157527983 157528175 -24887067 + MER58B DNA MER1_type 132 341 0 2418 99 11 8 chr6 157528374 157528728 -24886514 - THE1A LTR MaLR 0 355 1 344 261 121 8 chr6 157529249 157529460 -24885782 + MIR SINE MIR 20 261 -1 216 189 0 0 chr6 157531327 157531364 -24883878 - MIR SINE MIR -109 153 117 512 265 15 0 chr6 157531694 157531826 -24883416 - MER63 DNA MER1_type -302 760 1 501 297 38 38 chr6 157534035 157534244 -24880998 - MIR SINE MIR -31 231 23 263 356 0 0 chr6 157534277 157534364 -24880878 + MIR3 SINE MIR 108 194 -14 1717 148 60 9 chr6 157536371 157536688 -24878554 - MLT1A1 LTR MaLR -2 363 31 6150 57 21 0 chr6 157538499 157539289 -24875953 + L1PA7 LINE L1 5344 6150 -4 228 289 49 73 chr6 157539648 157539843 -24875399 + MIR SINE MIR 26 212 -50 1050 282 171 18 chr6 157540249 157540382 -24874860 + L3 LINE CR1 878 989 -588 2289 115 0 0 chr6 157540382 157540687 -24874555 + AluSq SINE Alu 1 305 -8 1050 282 171 18 chr6 157540687 157541068 -24874174 + L3 LINE CR1 989 1471 -106 2074 111 7 10 chr6 157541405 157541711 -24873531 + AluSx SINE Alu 1 305 -7 4667 47 3 5 chr6 157542298 157542876 -24872366 - L1PA7 LINE L1 -1 6153 5577 3604 174 21 6 chr6 157543048 157543728 -24871514 + L1MB5 LINE L1 5484 6173 -1 2080 109 13 16 chr6 157543843 157544146 -24871096 + AluSq SINE Alu 2 303 -10 228 355 73 36 chr6 157544515 157544625 -24870617 + L2 LINE L2 3080 3193 -79 743 224 0 6 chr6 157544864 157545025 -24870217 + MER69A DNA AcHobo 8 167 -10 188 206 0 0 chr6 157545197 157545231 -24870011 + MIR SINE MIR 84 117 -91 320 244 0 0 chr6 157547933 157548011 -24867231 + L1M4 LINE L1 1355 1432 -5110 22 0 0 0 chr6 157550154 157550176 -24865066 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr6 157550381 157550419 -24864823 + AT_rich Low_complexity Low_complexity 1 38 0 9286 19 1 0 chr6 157550835 157552420 -24862822 + L1PA4 LINE L1 4256 5843 -312 23 33 0 0 chr6 157553623 157553653 -24861589 + AT_rich Low_complexity Low_complexity 1 30 0 1584 188 29 4 chr6 157553799 157554076 -24861166 - AluJo SINE Alu -28 284 1 731 219 56 22 chr6 157554096 157554314 -24860928 - MIR SINE MIR -25 237 13 2490 72 0 0 chr6 157554774 157555067 -24860175 + AluSc SINE Alu 1 293 -16 24 32 0 0 chr6 157555313 157555344 -24859898 + AT_rich Low_complexity Low_complexity 1 31 0 3365 113 42 6 chr6 157557220 157557725 -24857517 + MER1A DNA MER1_type 1 523 -4 573 234 0 0 chr6 157557783 157557894 -24857348 + MER45A DNA AcHobo 48 158 -20 355 307 79 8 chr6 157558061 157558188 -24857054 + MER5A DNA MER1_type 54 189 0 398 336 30 60 chr6 157558629 157558897 -24856345 + MIR SINE MIR 1 260 -2 1464 177 104 3 chr6 157559185 157559501 -24855741 + MLT2C1 LTR ERVL 1 348 -49 342 0 0 0 chr6 157559522 157559560 -24855682 + (CA)n Simple_repeat Simple_repeat 2 39 0 390 21 0 0 chr6 157559560 157559607 -24855635 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 680 234 32 13 chr6 157559607 157559765 -24855477 - FRAM SINE Alu -15 161 1 24 53 0 0 chr6 157559766 157559804 -24855438 + AT_rich Low_complexity Low_complexity 1 38 0 1302 161 23 118 chr6 157559804 157560153 -24855089 - MLT1A1 LTR MaLR -12 353 38 332 283 0 11 chr6 157560237 157560329 -24854913 + L1MC4 LINE L1 6615 6705 -1337 204 176 12 24 chr6 157560338 157560423 -24854819 + (TA)n Simple_repeat Simple_repeat 1 84 0 1270 78 0 0 chr6 157560474 157560628 -24854614 - AluY SINE Alu -43 268 115 340 314 82 44 chr6 157561723 157561882 -24853360 - MIR SINE MIR -10 252 88 354 175 0 0 chr6 157561956 157562036 -24853206 + CT-rich Low_complexity Low_complexity 2 81 0 222 105 0 0 chr6 157562048 157562086 -24853156 + (CA)n Simple_repeat Simple_repeat 1 38 0 289 277 62 9 chr6 157563908 157564020 -24851222 - MIR SINE MIR -64 198 81 888 214 6 12 chr6 157564122 157564295 -24850947 + FAM SINE Alu 1 172 -3 22 35 0 0 chr6 157564952 157564981 -24850261 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 157565748 157565769 -24849473 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 27 0 0 0 chr6 157566382 157566409 -24848833 + AT_rich Low_complexity Low_complexity 1 27 0 608 189 0 47 chr6 157566856 157566983 -24848259 + FLAM_C SINE Alu 1 121 -22 274 314 113 13 chr6 157567563 157567802 -24847440 + L1 LINE L1 3529 3791 -2355 203 185 37 19 chr6 157567947 157568001 -24847241 + A-rich Low_complexity Low_complexity 1 55 0 1146 176 75 43 chr6 157568136 157568391 -24846851 + MLT1E LTR MaLR 10 272 -321 344 179 15 0 chr6 157568388 157568455 -24846787 + U4 snRNA snRNA 1 68 -77 * 1413 200 26 63 chr6 157568451 157568801 -24846441 + MLT1E LTR MaLR 257 593 0 2802 216 67 38 chr6 157568838 157569928 -24845314 - L1ME1 LINE L1 0 6235 5122 2109 242 49 32 chr6 157569925 157570279 -24844963 - L1ME1 LINE L1 -4606 1790 1444 * 2198 117 0 7 chr6 157570279 157570578 -24844664 + AluSq SINE Alu 1 297 -16 2109 242 49 32 chr6 157570578 157571281 -24843961 - L1ME1 LINE L1 -4952 1444 725 1115 266 47 56 chr6 157571302 157571731 -24843511 - L1ME1 LINE L1 -5768 628 204 2185 129 0 10 chr6 157572023 157572333 -24842909 - AluSx SINE Alu -5 307 1 370 291 72 8 chr6 157572528 157572747 -24842495 + L1MC4a LINE L1 5686 5919 -265 257 233 17 0 chr6 157573782 157573842 -24841400 + CT-rich Low_complexity Low_complexity 2 62 0 324 216 62 52 chr6 157573847 157573944 -24841298 - L2 LINE L2 -1 3312 3215 1965 135 42 3 chr6 157574605 157574893 -24840349 + AluSp SINE Alu 1 299 -14 615 243 43 0 chr6 157574949 157575089 -24840153 - MIR SINE MIR -108 154 9 465 308 84 29 chr6 157575222 157575495 -24839747 - L3 LINE CR1 -431 1146 859 590 206 139 43 chr6 157575507 157575716 -24839526 - L1ME4a LINE L1 -126 5995 5767 2366 107 0 0 chr6 157575786 157576095 -24839147 - AluSc SINE Alu 0 309 1 238 339 156 9 chr6 157576460 157576569 -24838673 - MIR SINE MIR -118 144 20 226 293 65 83 chr6 157577923 157578034 -24837208 - L2 LINE L2 -72 3200 3089 204 40 0 0 chr6 157578034 157578059 -24837183 + (CTGGGG)n Simple_repeat Simple_repeat 1 25 0 226 293 65 83 chr6 157578059 157578176 -24837066 - L2 LINE L2 -183 3089 2976 213 119 0 0 chr6 157578414 157578456 -24836786 + (A)n Simple_repeat Simple_repeat 1 42 0 1544 218 29 6 chr6 157578539 157578887 -24836355 + L1MB8 LINE L1 5823 6178 0 223 338 14 0 chr6 157579259 157579333 -24835909 + MIR SINE MIR 73 147 -115 2261 116 3 0 chr6 157579355 157579666 -24835576 + AluSx SINE Alu 1 312 0 564 144 0 21 chr6 157579768 157579865 -24835377 + AluY SINE Alu 202 296 -15 1759 175 32 9 chr6 157579866 157580181 -24835061 - MER7C DNA MER2_type -278 324 3 211 259 74 0 chr6 157581050 157581104 -24834138 + MIR3 SINE MIR 151 208 0 21 36 0 0 chr6 157581500 157581528 -24833714 + AT_rich Low_complexity Low_complexity 1 28 0 2046 122 3 13 chr6 157581694 157582005 -24833237 + AluSx SINE Alu 1 308 -4 303 250 23 0 chr6 157582598 157582686 -24832556 + MER103 DNA DNA 65 154 -12 23 33 0 0 chr6 157582838 157582868 -24832374 + AT_rich Low_complexity Low_complexity 1 30 0 2142 69 7 0 chr6 157583062 157583337 -24831905 + AluY SINE Alu 35 311 0 183 42 0 0 chr6 157585751 157585775 -24829467 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 248 346 39 23 chr6 157588093 157588223 -24827019 - L2 LINE L2 0 3313 3182 1363 190 11 25 chr6 157589550 157589824 -24825418 + MLT1C LTR MaLR 196 465 -2 308 208 0 78 chr6 157589903 157589936 -24825306 - LTR16B LTR ERVL 0 464 430 2266 104 81 26 chr6 157589936 157590281 -24824961 + THE1B LTR MaLR 1 364 0 308 208 0 78 chr6 157590281 157590324 -24824918 - LTR16B LTR ERVL -34 430 394 180 0 0 0 chr6 157590971 157590991 -24824251 + (GGA)n Simple_repeat Simple_repeat 3 22 0 2032 110 37 23 chr6 157591386 157591686 -24823556 + AluSx SINE Alu 1 304 -8 2303 81 0 17 chr6 157592330 157592627 -24822615 + AluSg SINE Alu 1 292 -18 183 42 0 0 chr6 157592630 157592654 -24822588 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2184 123 3 0 chr6 157593531 157593823 -24821419 - AluSx SINE Alu -19 293 1 486 249 249 10 chr6 157594075 157594268 -24820974 + MLT1E LTR MaLR 1 239 -354 384 275 162 7 chr6 157594431 157594573 -24820669 + L2 LINE L2 2917 3080 -192 23 0 0 0 chr6 157594672 157594695 -24820547 + AT_rich Low_complexity Low_complexity 1 23 0 2440 221 61 46 chr6 157594926 157595673 -24819569 + MER21B LTR ERV1 9 848 -83 364 352 55 21 chr6 157596007 157596152 -24819090 + L2 LINE L2 3121 3270 -2 2857 120 23 35 chr6 157597842 157598275 -24816967 + MSTA LTR MaLR 1 428 0 3293 139 40 98 chr6 157599455 157600138 -24815104 - MER73 LTR ERVL -1 643 1 368 295 92 40 chr6 157600840 157601013 -24814229 - MIR3 SINE MIR -3 205 24 405 0 0 0 chr6 157601858 157601903 -24813339 + (CA)n Simple_repeat Simple_repeat 2 46 0 193 321 52 45 chr6 157602207 157602341 -24812901 + MIR SINE MIR 30 164 -98 1972 150 61 143 chr6 157603446 157604006 -24811236 + MLT2B3 LTR ERVL 1 514 -40 238 83 28 0 chr6 157604042 157604078 -24811164 + MLT2C1 LTR ERVL 357 393 -4 2211 144 29 0 chr6 157604078 157604453 -24810789 + MST-int LTR MaLR 3 388 -1263 2258 250 78 2 chr6 157604456 157605093 -24810149 + MER20B DNA MER1_type 98 783 0 183 328 137 8 chr6 157605112 157605243 -24809999 + MIR3 SINE MIR 40 187 -21 14049 179 26 6 chr6 157605430 157608808 -24806434 + L1PA14 LINE L1 2747 6161 0 300 258 17 42 chr6 157609996 157610116 -24805126 - MER103 DNA DNA -47 119 3 2323 94 0 3 chr6 157611239 157611538 -24803704 + AluSg SINE Alu 1 298 -12 319 242 44 0 chr6 157611539 157611630 -24803612 + MER103 DNA DNA 71 165 -1 733 259 65 51 chr6 157611744 157612158 -24803084 + MLT1J1 LTR MaLR 1 420 -26 2414 71 3 0 chr6 157612504 157612799 -24802443 - AluSp SINE Alu -17 296 1 1885 140 20 10 chr6 157612799 157613092 -24802150 - AluSx SINE Alu -16 296 1 382 237 41 0 chr6 157613118 157613215 -24802027 - L1ME4a LINE L1 -37 6084 5984 190 308 192 0 chr6 157613531 157613635 -24801607 + L2 LINE L2 3146 3269 -3 240 253 33 55 chr6 157613960 157614051 -24801191 + MIR3 SINE MIR 114 202 -6 343 43 0 22 chr6 157614844 157614890 -24800352 + AluY SINE Alu 9 53 -249 545 90 26 0 chr6 157615023 157615101 -24800141 + MADE1 DNA Mariner 1 80 0 1705 149 38 7 chr6 157616534 157616823 -24798419 + AluJb SINE Alu 1 298 -14 21 36 0 0 chr6 157617085 157617113 -24798129 + AT_rich Low_complexity Low_complexity 1 28 0 505 0 15 15 chr6 157617165 157617231 -24798011 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 720 192 62 73 chr6 157617240 157617417 -24797825 + MER58B DNA MER1_type 167 341 0 974 287 63 34 chr6 157619271 157619717 -24795525 - MLT1H LTR MaLR 0 549 91 273 231 192 13 chr6 157619794 157619872 -24795370 - MLT1H LTR MaLR -452 97 6 336 222 111 12 chr6 157619903 157619984 -24795258 - MIR3 SINE MIR -4 204 116 2242 243 92 100 chr6 157620123 157620998 -24794244 + L1MC4 LINE L1 5609 6489 -1553 2261 115 0 0 chr6 157620998 157621303 -24793939 + AluSx SINE Alu 1 305 -7 2242 243 92 100 chr6 157621303 157621630 -24793612 + L1MC4 LINE L1 6489 6817 -1225 1726 99 4 17 chr6 157621630 157621862 -24793380 - MER30 DNA MER1_type 0 230 2 2242 243 92 100 chr6 157621862 157621915 -24793327 + L1MC4 LINE L1 6817 6869 -1173 204 40 0 0 chr6 157621915 157621940 -24793302 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2242 243 92 100 chr6 157621940 157622993 -24792249 + L1MC4 LINE L1 6869 8041 -1 505 282 96 21 chr6 157623022 157623210 -24792032 + MIR SINE MIR 49 250 -12 6466 35 0 1 chr6 157623336 157624141 -24791101 - L1PA5 LINE L1 -1 6153 5350 1852 82 0 8 chr6 157624142 157624397 -24790845 - L1PA3 LINE L1 -3 6152 5900 21 0 0 0 chr6 157624572 157624593 -24790649 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 157624767 157624789 -24790453 + AT_rich Low_complexity Low_complexity 1 22 0 2240 182 64 38 chr6 157626012 157626360 -24788882 + MER44D DNA MER2_type 1 424 -2063 2236 107 10 0 chr6 157626360 157626659 -24788583 - AluSx SINE Alu -10 302 1 2240 182 64 38 chr6 157626659 157626844 -24788398 + MER44D DNA MER2_type 424 603 -2 310 241 157 0 chr6 157629427 157629510 -24785732 - MER5B DNA MER1_type -82 96 1 195 257 92 46 chr6 157629513 157629622 -24785620 - L2 LINE L2 -191 3081 2968 342 313 204 32 chr6 157630719 157631032 -24784210 + L3 LINE CR1 1192 1558 -19 313 235 0 0 chr6 157631147 157631249 -24783993 + L1ME1 LINE L1 2281 2382 -4014 1784 203 34 61 chr6 157631254 157631850 -24783392 + L1ME1 LINE L1 5624 6362 -41 1731 163 0 36 chr6 157632636 157632937 -24782305 + AluJo SINE Alu 1 290 -22 671 227 122 36 chr6 157634231 157634509 -24780733 - L2 LINE L2 -1 3312 3011 216 86 0 0 chr6 157635164 157635199 -24780043 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1760 197 72 25 chr6 157635405 157635847 -24779395 - MLT1C LTR MaLR -4 463 1 1314 124 0 10 chr6 157636584 157636777 -24778465 - AluSg/x SINE Alu -15 295 105 775 242 56 40 chr6 157636905 157637157 -24778085 - MLT1E2 LTR MaLR -57 569 314 1271 201 10 109 chr6 157637179 157637426 -24777816 + MLT2D LTR ERVL 1 194 -220 7031 66 6 1 chr6 157637426 157638527 -24776715 + L1PA8 LINE L1 5068 6172 0 1271 201 10 109 chr6 157638527 157638683 -24776559 + MLT2D LTR ERVL 194 364 -50 870 252 45 16 chr6 157638661 157638903 -24776339 - MLT1E2 LTR MaLR -318 308 60 * 246 192 7 60 chr6 157640220 157640371 -24774871 + GA-rich Low_complexity Low_complexity 3 145 0 542 285 131 48 chr6 157641118 157641303 -24773939 - L1M4 LINE L1 -1068 5078 4910 5463 129 10 21 chr6 157641303 157641618 -24773624 + L1PA16 LINE L1 4821 5138 -1028 2340 110 0 0 chr6 157641618 157641919 -24773323 + AluSx SINE Alu 1 301 -11 5463 129 10 21 chr6 157641919 157642953 -24772289 + L1PA16 LINE L1 5138 6156 -10 542 285 131 48 chr6 157642953 157644020 -24771222 - L1M4 LINE L1 -1236 4910 3722 1466 204 65 139 chr6 157644887 157645541 -24769701 + L1MC4a LINE L1 5879 6445 -1363 1852 189 0 0 chr6 157645541 157645837 -24769405 + AluJb SINE Alu 1 296 -16 1466 204 65 139 chr6 157645837 157646110 -24769132 + L1MC4a LINE L1 6445 6737 -1071 815 212 120 34 chr6 157646156 157646498 -24768744 - MER57A LTR ERV1 -4 399 67 216 67 0 0 chr6 157646502 157646532 -24768710 + (T)n Simple_repeat Simple_repeat 1 30 0 8153 34 1 3 chr6 157646632 157648164 -24767078 - L1PA3 LINE L1 -307 5848 4321 2368 38 0 0 chr6 157648161 157648454 -24766788 + L1PA3 LINE L1 4037 4329 -1817 * 2244 90 0 27 chr6 157648454 157648754 -24766488 - AluY SINE Alu -8 303 12 305 331 159 13 chr6 157649540 157649697 -24765545 - MIR3 SINE MIR -6 202 23 2001 161 38 31 chr6 157649812 157650357 -24764885 + MLT2A2 LTR ERVL 1 554 0 189 333 154 8 chr6 157650806 157650929 -24764313 - L2 LINE L2 0 3272 3132 468 0 0 0 chr6 157651035 157651087 -24764155 + (CA)n Simple_repeat Simple_repeat 2 53 0 219 231 185 28 chr6 157651292 157651400 -24763842 - MIR3 SINE MIR -21 187 63 212 314 160 12 chr6 157653265 157653437 -24761805 - MIR SINE MIR -4 258 63 258 122 0 81 chr6 157654398 157654476 -24760766 + (CAAAA)n Simple_repeat Simple_repeat 1 71 0 369 0 0 0 chr6 157654550 157654591 -24760651 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1654 194 14 33 chr6 157654835 157655196 -24760046 + MLT1A1 LTR MaLR 1 354 -11 1290 126 6 0 chr6 157655558 157655753 -24759489 + AluSg/x SINE Alu 106 301 0 357 56 74 0 chr6 157655754 157655808 -24759434 - L1PB1 LINE L1 -283 5868 5811 459 327 33 11 chr6 157657189 157657461 -24757781 + L1ME4a LINE L1 5547 5824 -297 21 36 0 0 chr6 157657936 157657964 -24757278 + AT_rich Low_complexity Low_complexity 1 28 0 626 258 93 83 chr6 157658384 157658771 -24756471 + L1MEd LINE L1 997 1387 -5029 248 176 165 0 chr6 157658782 157658867 -24756375 + L1MEd LINE L1 1234 1332 -5094 435 82 16 0 chr6 157659260 157659321 -24755921 - Alu SINE Alu -248 62 1 23 33 0 0 chr6 157660011 157660041 -24755201 + AT_rich Low_complexity Low_complexity 1 30 0 2302 113 0 0 chr6 157661816 157662118 -24753124 - AluSg SINE Alu -8 302 1 243 223 43 21 chr6 157662957 157663051 -24752191 + MER103 DNA DNA 63 158 -8 327 242 0 0 chr6 157663214 157663313 -24751929 + (TG)n Simple_repeat Simple_repeat 2 100 0 25 51 0 0 chr6 157664003 157664042 -24751200 + AT_rich Low_complexity Low_complexity 1 39 0 337 203 140 14 chr6 157664449 157664592 -24750650 + L1ME4a LINE L1 5961 6121 0 1074 203 15 31 chr6 157667506 157667665 -24747577 - MER33 DNA MER1_type -2265 320 167 1584 166 7 60 chr6 157667665 157667966 -24747276 - AluJb SINE Alu -27 285 1 1074 203 15 31 chr6 157667966 157668131 -24747111 - MER33 DNA MER1_type -2418 167 1 459 78 0 0 chr6 157668383 157668447 -24746795 + (TG)n Simple_repeat Simple_repeat 2 65 0 862 298 4 8 chr6 157668802 157669049 -24746193 - MIR SINE MIR -5 257 16 546 260 97 75 chr6 157670359 157670690 -24744552 - MER102b DNA MER1_type 0 341 4 267 31 0 0 chr6 157670861 157670893 -24744349 + (T)n Simple_repeat Simple_repeat 1 32 0 1501 50 0 6 chr6 157671025 157671206 -24744036 - AluY SINE Alu -131 180 1 242 250 0 0 chr6 157671301 157671353 -24743889 + (TA)n Simple_repeat Simple_repeat 1 52 0 297 0 0 0 chr6 157672129 157672162 -24743080 + (T)n Simple_repeat Simple_repeat 1 33 0 209 298 0 0 chr6 157773371 157773418 -24641824 + L2 LINE L2 3210 3256 -16 4588 73 5 7 chr6 157773437 157774023 -24641219 - L1PA8 LINE L1 0 6172 5588 674 306 70 31 chr6 157775456 157775811 -24639431 - MLT1K LTR MaLR -4 584 216 1181 151 43 108 chr6 157775811 157776136 -24639106 - MLT1B LTR MaLR -2 388 85 543 169 0 0 chr6 157776140 157776223 -24639019 + AluS SINE Alu 1 83 -230 673 130 0 16 chr6 157776234 157776357 -24638885 + (GGA)n Simple_repeat Simple_repeat 3 123 0 350 221 23 12 chr6 157776364 157776450 -24638792 - MLT1B LTR MaLR -380 87 1 352 176 0 0 chr6 157777389 157777440 -24637802 - AluJ/FRAM SINE Alu -20 282 232 1189 161 0 47 chr6 157777440 157777651 -24637591 + AluJo SINE Alu 1 201 -111 249 33 0 0 chr6 157778722 157778752 -24636490 + (CA)n Simple_repeat Simple_repeat 1 30 0 1382 202 7 31 chr6 157778802 157779094 -24636148 + AluJo SINE Alu 2 286 -26 1759 208 14 16 chr6 157779381 157779747 -24635495 + MLT1A1 LTR MaLR 1 365 0 239 0 32 0 chr6 157780874 157780905 -24634337 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 6132 116 74 18 chr6 157780907 157782426 -24632816 - SVA Other Other -723 1366 1 338 365 6 0 chr6 157783246 157783402 -24631840 + MIR SINE MIR 36 192 -70 914 257 97 54 chr6 157783515 157783998 -24631244 + MLT1H1 LTR MaLR 49 552 -3 2038 117 3 3 chr6 157784399 157784682 -24630560 + AluJb SINE Alu 1 283 -29 501 84 0 0 chr6 157784684 157784755 -24630487 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 680 185 31 15 chr6 157784909 157785039 -24630203 + FLAM_C SINE Alu 1 132 -1 264 170 0 0 chr6 157785039 157785092 -24630150 + GA-rich Low_complexity Low_complexity 3 55 0 186 221 182 13 chr6 157785521 157785598 -24629644 - MIR SINE MIR -78 130 41 1996 144 0 0 chr6 157786939 157787231 -24628011 - AluJb SINE Alu -7 305 14 2033 112 35 3 chr6 157787726 157788011 -24627231 - AluSg SINE Alu -16 294 1 1946 128 35 0 chr6 157788900 157789182 -24626060 + AluSx SINE Alu 1 292 -20 218 302 173 17 chr6 157790391 157790570 -24624672 + MIR SINE MIR 11 217 -45 405 261 130 0 chr6 157790639 157790800 -24624442 + MIR SINE MIR 75 256 -6 1921 104 62 0 chr6 157791870 157792177 -24623065 - AluSx SINE Alu 0 331 9 2233 109 6 13 chr6 157793352 157793663 -24621579 - AluSc SINE Alu 0 309 1 2229 97 3 26 chr6 157793863 157794172 -24621070 - AluSx SINE Alu -10 302 1 2469 60 3 0 chr6 157797299 157797597 -24617645 + AluY SINE Alu 3 301 -10 1728 150 72 44 chr6 157800374 157800519 -24614723 + THE1C LTR MaLR 3 143 -232 1944 154 0 0 chr6 157800519 157800818 -24614424 - AluSx SINE Alu -10 302 4 1728 150 72 44 chr6 157800818 157801033 -24614209 + THE1C LTR MaLR 143 373 -2 216 0 0 0 chr6 157801493 157801517 -24613725 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 322 213 16 0 chr6 157801533 157801594 -24613648 + Charlie8 DNA MER1_type 184 245 -2172 255 355 0 9 chr6 157801664 157801771 -24613471 - MIR SINE MIR -61 147 42 2135 116 31 0 chr6 157801771 157802063 -24613179 + AluSx SINE Alu 1 301 -11 1293 221 4 0 chr6 157802151 157802391 -24612851 + AluJo SINE Alu 65 305 -7 408 208 0 25 chr6 157802415 157802535 -24612707 + GA-rich Low_complexity Low_complexity 4 120 0 188 314 128 0 chr6 157803873 157803959 -24611283 - MIR SINE MIR -1 261 165 204 342 7 65 chr6 157803979 157804062 -24611180 + L3 LINE CR1 1078 1149 -428 852 171 20 70 chr6 157804062 157804261 -24610981 - MER5A DNA MER1_type 0 189 1 204 342 7 65 chr6 157804261 157804332 -24610910 + L3 LINE CR1 1149 1223 -354 2061 135 10 0 chr6 157805349 157805653 -24609589 + AluSx SINE Alu 6 312 0 286 226 21 32 chr6 157805988 157806081 -24609161 + CT-rich Low_complexity Low_complexity 3 94 0 2263 126 0 0 chr6 157807081 157807390 -24607852 + AluSq SINE Alu 1 309 -4 624 160 150 85 chr6 157808643 157808843 -24606399 + ORSL DNA AcHobo 4 216 -59 527 229 75 21 chr6 157808970 157809158 -24606084 + MER113 DNA MER1_type? 1 198 -323 2102 130 0 0 chr6 157809179 157809464 -24605778 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr6 157809465 157809503 -24605739 + (CA)n Simple_repeat Simple_repeat 1 38 0 708 252 9 33 chr6 157809842 157810056 -24605186 + MER3 DNA MER1_type 1 209 0 440 326 62 0 chr6 157810861 157811088 -24604154 + MLT1L LTR MaLR 151 391 -224 2207 111 0 17 chr6 157812917 157813215 -24602027 + AluSx SINE Alu 1 293 -19 219 281 156 10 chr6 157813823 157813919 -24601323 - L2 LINE L2 -4 3268 3159 2215 123 0 0 chr6 157813960 157814261 -24600981 + AluSx SINE Alu 1 301 -11 293 235 185 8 chr6 157814310 157814429 -24600813 - MIR SINE MIR -116 146 7 676 272 155 8 chr6 157815129 157815394 -24599848 + MER46C DNA MER2_type 29 332 -6 440 257 62 21 chr6 157815414 157815558 -24599684 - MIR SINE MIR -65 197 48 252 0 0 0 chr6 157816177 157816205 -24599037 + (TG)n Simple_repeat Simple_repeat 2 29 0 428 304 90 25 chr6 157817026 157817227 -24598015 + MIR SINE MIR 13 226 -36 1898 108 0 4 chr6 157818503 157818796 -24596446 - AluSx SINE Alu 0 326 35 21 0 0 0 chr6 157819053 157819074 -24596168 + AT_rich Low_complexity Low_complexity 1 21 0 2229 106 13 0 chr6 157819397 157819698 -24595544 - AluSx SINE Alu -7 305 1 397 155 117 19 chr6 157819903 157820006 -24595236 + MIR SINE MIR 76 188 -74 436 264 120 12 chr6 157820094 157820261 -24594981 - MIR SINE MIR -50 212 28 2016 135 0 31 chr6 157820394 157820712 -24594530 + AluJo SINE Alu 1 308 -4 197 281 88 35 chr6 157822525 157822696 -24592546 - L2 LINE L2 -1233 2081 1902 1082 223 22 60 chr6 157822760 157823185 -24592057 - MLT1A1 LTR MaLR -2 363 1 2229 112 3 0 chr6 157823306 157823601 -24591641 + AluSx SINE Alu 3 298 -14 22 0 0 0 chr6 157823864 157823886 -24591356 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr6 157825450 157825478 -24589764 + (TC)n Simple_repeat Simple_repeat 1 28 0 206 282 51 13 chr6 157825569 157825647 -24589595 + MIR SINE MIR 74 154 -108 598 266 113 31 chr6 157825803 157826032 -24589210 + MIR SINE MIR 2 249 -13 822 249 64 14 chr6 157826296 157826577 -24588665 - Charlie2a DNA MER1_type -1842 1020 726 1458 176 8 23 chr6 157826683 157826945 -24588297 + AluJb SINE Alu 1 258 -54 591 220 71 119 chr6 157826972 157827039 -24588203 - Charlie2a DNA MER1_type -2482 380 311 2026 147 0 0 chr6 157827039 157827332 -24587910 - AluSx SINE Alu -19 293 1 591 220 71 119 chr6 157827332 157827600 -24587642 - Charlie2a DNA MER1_type -2551 311 61 2935 84 5 3 chr6 157828013 157828396 -24586846 + L1PB2 LINE L1 5761 6144 -7 23 0 0 0 chr6 157828396 157828419 -24586823 + AT_rich Low_complexity Low_complexity 1 23 0 955 284 84 43 chr6 157829149 157829613 -24585629 - MLT1L LTR MaLR -2 613 131 564 224 7 86 chr6 157829893 157830019 -24585223 + L2 LINE L2 3172 3287 -26 2133 109 3 11 chr6 157830019 157830331 -24584911 - AluSx SINE Alu 0 310 1 564 224 7 86 chr6 157830331 157830355 -24584887 + L2 LINE L2 3287 3311 -2 613 264 78 64 chr6 157831401 157831524 -24583718 + L3 LINE CR1 632 752 -825 2015 138 10 3 chr6 157831524 157831828 -24583414 + AluSx SINE Alu 1 306 -6 613 264 78 64 chr6 157831828 157831999 -24583243 + L3 LINE CR1 752 930 -647 228 65 0 0 chr6 157832215 157832246 -24582996 + L1MA10 LINE L1 6304 6334 0 3211 207 66 20 chr6 157832267 157832390 -24582852 - L1MB7 LINE L1 -10 6174 6058 2201 106 34 0 chr6 157832390 157832682 -24582560 - AluSx SINE Alu -10 302 1 3211 207 66 20 chr6 157832682 157833015 -24582227 - L1MB7 LINE L1 -126 6058 5742 777 212 0 0 chr6 157833015 157833147 -24582095 - FLAM_A SINE Alu -1 132 1 3211 207 66 20 chr6 157833147 157834147 -24581095 - L1MB7 LINE L1 -442 5742 4653 427 360 154 15 chr6 157834149 157834538 -24580704 + L3 LINE CR1 1079 1521 -56 535 264 114 12 chr6 157834603 157834770 -24580472 - MIR SINE MIR -69 193 10 182 326 56 56 chr6 157835094 157835290 -24579952 - L2 LINE L2 -844 2470 2275 437 289 72 39 chr6 157835508 157835645 -24579597 - MIR SINE MIR -28 234 86 2066 73 8 0 chr6 157835645 157835904 -24579338 + AluSp SINE Alu 42 302 -11 437 289 72 39 chr6 157835904 157835974 -24579268 - MIR SINE MIR -176 86 20 263 237 173 22 chr6 157836122 157836261 -24578981 - L2 LINE L2 -1 3312 3153 1353 192 0 61 chr6 157836283 157836596 -24578646 + AluJo SINE Alu 1 294 -18 1297 215 77 19 chr6 157837139 157837464 -24577778 + MER39 LTR ERV1 362 705 -2 197 356 94 30 chr6 157837467 157837678 -24577564 + L2 LINE L2 2422 2651 -663 2349 106 3 0 chr6 157837678 157837989 -24577253 - AluSx SINE Alu 0 312 1 197 356 94 30 chr6 157837989 157838010 -24577232 + L2 LINE L2 2651 2669 -645 1346 134 0 0 chr6 157838851 157839037 -24576205 + AluSx SINE Alu 1 186 -126 21 0 0 0 chr6 157839804 157839825 -24575417 + AT_rich Low_complexity Low_complexity 1 21 0 182 317 17 0 chr6 157840460 157840520 -24574722 - L2 LINE L2 -529 2785 2725 214 264 181 0 chr6 157840674 157840746 -24574496 + MIR3 SINE MIR 103 187 -21 216 158 0 0 chr6 157842196 157842234 -24573008 + T-rich Low_complexity Low_complexity 1 38 0 1688 106 4 4 chr6 157842396 157842631 -24572611 + THE1C LTR MaLR 1 235 -140 3116 45 0 0 chr6 157842631 157843009 -24572233 - L1PA3 LINE L1 -3796 2350 1973 26911 25 17 0 chr6 157843009 157846782 -24568460 + L1PA3 LINE L1 2366 6154 -1 1148 129 0 0 chr6 157846797 157846952 -24568290 + THE1C LTR MaLR 219 373 -2 207 258 34 56 chr6 157847139 157847228 -24568014 + L2 LINE L2 3186 3272 0 231 174 43 0 chr6 157847401 157847447 -24567795 + CT-rich Low_complexity Low_complexity 4 51 0 818 307 114 10 chr6 157847480 157847874 -24567368 - L3 LINE CR1 -2 1575 1141 907 205 0 0 chr6 157848045 157848216 -24567026 - FRAM SINE Alu -5 171 1 851 180 47 7 chr6 157848264 157848414 -24566828 - MER5A DNA MER1_type -2 187 32 299 221 11 42 chr6 157848481 157848576 -24566666 + MER96 DNA MER1_type? 1 92 -83 194 244 0 0 chr6 157848695 157848736 -24566506 - L3 LINE CR1 -398 1179 1139 2226 109 0 0 chr6 157849544 157849866 -24565376 - AluSx SINE Alu 0 322 1 275 255 49 49 chr6 157850412 157850514 -24564728 + MIR3 SINE MIR 84 185 -23 618 279 29 42 chr6 157851795 157852035 -24563207 - MIR SINE MIR -6 256 20 2037 193 59 14 chr6 157852598 157853038 -24562204 - MLT1C LTR MaLR -2 465 6 291 336 81 56 chr6 157853915 157854581 -24560661 + L2 LINE L2 2545 3271 -1 825 288 64 9 chr6 157854732 157855152 -24560090 + L1M4 LINE L1 4796 5238 -908 1688 249 80 23 chr6 157855176 157855863 -24559379 + HAL1 LINE L1 806 1531 -976 1877 282 84 21 chr6 157855918 157856135 -24559107 + HAL1 LINE L1 1627 1829 -678 2236 149 33 28 chr6 157856135 157856497 -24558745 + THE1B LTR MaLR 1 364 0 1877 282 84 21 chr6 157856497 157857005 -24558237 + HAL1 LINE L1 1829 2398 -109 25 31 0 0 chr6 157857432 157857464 -24557778 + AT_rich Low_complexity Low_complexity 1 32 0 1801 147 18 3 chr6 157859948 157860234 -24555008 - AluJo SINE Alu -18 294 5 370 209 43 35 chr6 157860599 157860714 -24554528 + L1MA8 LINE L1 6166 6281 -10 315 254 51 65 chr6 157862286 157862424 -24552818 - L2 LINE L2 -3 3269 3134 190 202 0 131 chr6 157862482 157862566 -24552676 - L2 LINE L2 -101 3212 3140 293 333 50 38 chr6 157862780 157863041 -24552201 + HAL1 LINE L1 39 302 -2205 227 244 54 65 chr6 157863683 157863851 -24551391 + L1MA4 LINE L1 6127 6292 -8 2073 125 7 0 chr6 157864010 157864305 -24550937 - AluSx SINE Alu -11 301 5 2012 173 55 3 chr6 157864798 157865144 -24550098 - MLT1A1 LTR MaLR 0 365 2 2142 108 0 0 chr6 157865631 157865910 -24549332 + AluSx SINE Alu 1 279 -33 21 0 0 0 chr6 157867170 157867191 -24548051 + AT_rich Low_complexity Low_complexity 1 21 0 1629 154 42 18 chr6 157867844 157868129 -24547113 + AluJb SINE Alu 1 292 -20 183 133 0 0 chr6 157868265 157868295 -24546947 + L2 LINE L2 3284 3313 0 581 180 86 8 chr6 157868377 157868505 -24546737 - L1MB5 LINE L1 0 6174 6037 198 0 0 0 chr6 157868763 157868785 -24546457 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2725 168 90 23 chr6 157869562 157870085 -24545157 - MER89 LTR ERV1 -1 558 1 787 268 69 4 chr6 157870377 157870608 -24544634 - MIR SINE MIR -16 246 1 194 105 26 0 chr6 157871698 157871736 -24543506 + T-rich Low_complexity Low_complexity 4 42 0 2182 132 0 0 chr6 157871955 157872258 -24542984 + AluSx SINE Alu 1 303 -9 1968 266 91 56 chr6 157872453 157872643 -24542599 - HAL1 LINE L1 0 2507 2325 2258 119 0 10 chr6 157872643 157872955 -24542287 - AluSq SINE Alu -4 309 1 1968 266 91 56 chr6 157872955 157873916 -24541326 - HAL1 LINE L1 -182 2325 1315 2312 85 16 16 chr6 157874045 157874350 -24540892 - AluSx SINE Alu -6 306 2 25 31 0 0 chr6 157874407 157874439 -24540803 + AT_rich Low_complexity Low_complexity 1 32 0 699 186 17 35 chr6 157874467 157874639 -24540603 - L1MA4 LINE L1 -11 6289 6121 4387 220 48 71 chr6 157874811 157876976 -24538266 - L1P3 LINE L1 -4207 2254 114 545 167 0 11 chr6 157877098 157877188 -24538054 + L1PA12 LINE L1 1462 1550 -6031 336 275 25 0 chr6 157877198 157877278 -24537964 - MLT1-int LTR MaLR -848 523 442 1207 264 96 14 chr6 157877280 157877636 -24537606 - MLT1G1 LTR MaLR -210 385 1 362 309 9 58 chr6 157878828 157879082 -24536160 + MIR SINE MIR 21 256 -6 893 203 15 46 chr6 157879242 157879439 -24535803 - MER20 DNA MER1_type -12 207 17 1349 164 51 121 chr6 157879516 157879905 -24535337 + MLT1A1 LTR MaLR 4 365 0 2230 117 3 0 chr6 157881154 157881462 -24533780 + AluSc SINE Alu 1 309 0 2517 52 0 16 chr6 157881543 157881851 -24533391 - AluY SINE Alu -8 303 1 6508 88 1 10 chr6 157882690 157884381 -24530861 - L1PA8 LINE L1 -1 6171 4549 24 32 0 0 chr6 157884381 157884412 -24530830 + AT_rich Low_complexity Low_complexity 1 31 0 2204 70 7 0 chr6 157884907 157885177 -24530065 + AluY SINE Alu 31 302 -9 1811 107 22 37 chr6 157886649 157886920 -24528322 - AluSc SINE Alu -10 299 33 252 77 0 0 chr6 157887184 157887223 -24528019 + (CCTG)n Simple_repeat Simple_repeat 2 40 0 1928 155 3 3 chr6 157887618 157887927 -24527315 - AluSx SINE Alu -3 309 1 2324 167 141 9 chr6 157888695 157889143 -24526099 - MLT2B2 LTR ERVL -8 507 1 2567 138 48 17 chr6 157889485 157889904 -24525338 - MSTB1 LTR MaLR 0 432 1 211 316 53 0 chr6 157890090 157890166 -24525076 + MIR3 SINE MIR 82 161 -47 2744 7 0 0 chr6 157891648 157891939 -24523303 - AluYb8 SINE Alu -12 306 16 37 52 0 0 chr6 157893229 157893287 -24521955 + AT_rich Low_complexity Low_complexity 1 58 0 668 74 0 0 chr6 157893899 157893980 -24521262 - AluY SINE Alu -222 89 9 1726 98 0 13 chr6 157893980 157894214 -24521028 + AluSc SINE Alu 74 304 -5 327 213 38 25 chr6 157894468 157894548 -24520694 - MER103 DNA DNA -83 83 3 1885 159 14 0 chr6 157895849 157896144 -24519098 - AluJo SINE Alu -11 301 3 1477 191 83 57 chr6 157896413 157896785 -24518457 - MLT1B LTR MaLR -8 382 1 26 0 0 0 chr6 157897012 157897038 -24518204 + AT_rich Low_complexity Low_complexity 1 26 0 3346 192 24 12 chr6 157897170 157897837 -24517405 + Tigger7 DNA MER2_type 1 2586 -1 2419 82 0 0 chr6 157897910 157898215 -24517027 + AluY SINE Alu 1 305 -6 271 243 29 0 chr6 157898551 157898621 -24516621 - MIR SINE MIR -114 148 77 1751 123 116 0 chr6 157898701 157898977 -24516265 - AluSq SINE Alu -5 308 1 359 186 29 0 chr6 157899938 157900008 -24515234 + L1MC5 LINE L1 7806 7877 -84 528 165 22 0 chr6 157900524 157900615 -24514627 - MER44D DNA MER2_type 0 609 517 416 165 11 0 chr6 157900630 157900721 -24514521 + (TA)n Simple_repeat Simple_repeat 1 92 0 2414 175 55 13 chr6 157900725 157901176 -24514066 - MER44D DNA MER2_type -79 526 2 2279 110 0 19 chr6 157902231 157902549 -24512693 + AluSx SINE Alu 1 312 0 189 147 0 0 chr6 157902596 157902630 -24512612 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 393 22 0 0 chr6 157902963 157903009 -24512233 + (TG)n Simple_repeat Simple_repeat 2 47 0 2321 96 0 0 chr6 157904012 157904305 -24510937 - AluSx SINE Alu -19 293 1 2284 98 0 10 chr6 157904713 157905018 -24510224 - AluY SINE Alu -9 302 1 324 294 113 19 chr6 157905024 157905184 -24510058 - MER5B DNA MER1_type -3 175 1 224 327 93 26 chr6 157905359 157905628 -24509614 + L2 LINE L2 2626 2912 -402 1212 188 140 30 chr6 157905747 157906076 -24509166 + MLT1A1 LTR MaLR 1 365 0 281 327 12 48 chr6 157906445 157906610 -24508632 + L3b LINE CR1 1331 1489 -94 446 262 0 0 chr6 157906687 157906794 -24508448 - L1ME LINE L1 -444 5677 5571 381 279 75 50 chr6 157906797 157906998 -24508244 - L1ME LINE L1 -688 5474 5269 299 209 0 23 chr6 157907458 157907544 -24507698 + CT-rich Low_complexity Low_complexity 1 84 0 1730 210 66 49 chr6 157908458 157908930 -24506312 + MLT2B1 LTR ERVL 1 480 -40 320 167 14 0 chr6 157908932 157909004 -24506238 + (TA)n Simple_repeat Simple_repeat 2 74 0 347 224 0 0 chr6 157909049 157909125 -24506117 + MLT2B1 LTR ERVL 445 520 0 219 139 0 0 chr6 157910223 157910259 -24504983 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1714 144 45 17 chr6 157910715 157911007 -24504235 - AluJo SINE Alu -12 300 1 2053 122 3 0 chr6 157911798 157912086 -24503156 + AluSc SINE Alu 1 289 -20 324 120 0 0 chr6 157912267 157912317 -24502925 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 481 372 31 23 chr6 157912360 157912712 -24502530 + L2 LINE L2 1728 2082 -1232 247 265 224 24 chr6 157912977 157913147 -24502095 + MIR SINE MIR 56 259 -3 332 297 91 48 chr6 157915183 157915348 -24499894 - MIR SINE MIR -71 191 20 607 244 125 88 chr6 157915608 157916096 -24499146 + LTR33 LTR ERVL 13 518 -3 445 157 270 0 chr6 157916462 157916577 -24498665 + MLT1J2 LTR MaLR 2 147 -303 182 146 0 24 chr6 157916650 157916691 -24498551 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 228 111 0 0 chr6 157918676 157918712 -24496530 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 426 223 18 27 chr6 157920973 157921085 -24494157 + MER103 DNA DNA 10 120 -46 34 0 0 0 chr6 157921202 157921236 -24494006 + AT_rich Low_complexity Low_complexity 1 34 0 655 271 78 10 chr6 157921274 157921466 -24493776 - MIR SINE MIR -12 250 46 190 353 95 35 chr6 157924291 157924407 -24490835 + L2 LINE L2 3127 3249 -23 2126 181 61 14 chr6 157924889 157925330 -24489912 - L1MB7 LINE L1 -9 6175 5714 1446 236 15 3 chr6 157925333 157925667 -24489575 - L1MB7 LINE L1 -1279 4867 4530 9331 223 40 43 chr6 157925670 157926584 -24488658 + L1M3c LINE L1 1 916 -5294 1679 166 18 35 chr6 157926584 157926868 -24488374 + AluJb SINE Alu 10 288 -24 237 141 22 11 chr6 157926868 157926963 -24488279 + GA-rich Low_complexity Low_complexity 1 96 0 9331 223 40 43 chr6 157926963 157927287 -24487955 + L1M3c LINE L1 915 1238 -4972 2305 115 0 0 chr6 157927287 157927591 -24487651 - AluSx SINE Alu -8 304 1 9331 223 40 43 chr6 157927591 157929400 -24485842 + L1M3c LINE L1 1238 2811 -3399 1807 167 73 42 chr6 157929400 157929754 -24485488 - MLT1A1 LTR MaLR 0 365 1 9331 223 40 43 chr6 157929754 157931281 -24483961 + L1M3c LINE L1 2811 4341 -1869 259 269 51 13 chr6 157931286 157931364 -24483878 - L2 LINE L2 -53 3219 3139 341 293 66 72 chr6 157931932 157932028 -24483214 + MIR3 SINE MIR 2 97 -111 311 0 0 25 chr6 157932028 157932068 -24483174 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2055 107 0 11 chr6 157932070 157932342 -24482900 - AluSx SINE Alu -23 289 21 341 293 66 72 chr6 157932342 157932423 -24482819 + MIR3 SINE MIR 98 181 -27 192 77 0 0 chr6 157932443 157932469 -24482773 + (GGA)n Simple_repeat Simple_repeat 3 28 0 689 259 61 20 chr6 157933457 157933654 -24481588 - MIR SINE MIR -44 218 14 222 171 0 0 chr6 157933895 157933936 -24481306 + (TG)n Simple_repeat Simple_repeat 2 42 0 183 111 0 0 chr6 157933939 157933966 -24481276 + L2 LINE L2 3280 3306 -7 233 269 29 19 chr6 157934495 157934599 -24480643 - L2 LINE L2 -926 2388 2284 494 199 132 7 chr6 157934806 157934942 -24480300 + L1MC4 LINE L1 7575 7727 -315 269 190 0 0 chr6 157934996 157935054 -24480188 + L1MC4 LINE L1 7985 8042 0 13406 103 32 108 chr6 157935228 157936273 -24478969 + Tigger1 DNA MER2_type 2 1125 -1293 1242 79 0 6 chr6 157936273 157936437 -24478805 - AluY SINE Alu 0 311 149 13406 103 32 108 chr6 157936437 157937286 -24477956 + Tigger1 DNA MER2_type 1125 2037 -381 2035 130 10 10 chr6 157937286 157937593 -24477649 - AluJb SINE Alu -5 307 1 13406 103 32 108 chr6 157937593 157937857 -24477385 + Tigger1 DNA MER2_type 2037 2129 -289 1917 98 43 0 chr6 157937857 157938112 -24477130 + AluSx SINE Alu 1 266 -46 13406 103 32 108 chr6 157938112 157938256 -24476986 + Tigger1 DNA MER2_type 2129 2282 -136 262 148 0 37 chr6 157938356 157938410 -24476832 - FRAM/FAM SINE Alu -114 52 1 2358 92 0 3 chr6 157938750 157939053 -24476189 + AluSq SINE Alu 1 302 -11 2136 113 10 0 chr6 157940425 157940718 -24474524 - AluSx SINE Alu -16 296 1 1064 204 91 57 chr6 157940980 157941333 -24473909 + MLT1A1 LTR MaLR 1 365 0 211 366 40 0 chr6 157942106 157942207 -24473035 - MER91C DNA MER1_type 0 140 36 529 274 56 116 chr6 157942217 157942416 -24472826 + L2 LINE L2 2922 3131 -182 2175 110 0 0 chr6 157942416 157942728 -24472514 - AluSx SINE Alu 0 314 3 529 274 56 116 chr6 157942728 157942819 -24472423 + L2 LINE L2 3131 3183 -130 408 40 0 0 chr6 157942819 157942869 -24472373 + (CA)n Simple_repeat Simple_repeat 1 50 0 529 274 56 116 chr6 157942869 157942989 -24472253 + L2 LINE L2 3183 3309 -4 217 282 48 48 chr6 157945424 157945527 -24469715 + MIR SINE MIR 13 115 -147 800 303 8 8 chr6 157945872 157946133 -24469109 + MIR SINE MIR 2 262 0 2093 122 0 35 chr6 157947245 157947375 -24467867 + AluSq SINE Alu 6 139 -174 2283 82 3 14 chr6 157947375 157947700 -24467542 + AluSp SINE Alu 1 313 0 2093 122 0 35 chr6 157947700 157947888 -24467354 + AluSq SINE Alu 139 313 0 483 18 0 0 chr6 157949111 157949167 -24466075 + (TG)n Simple_repeat Simple_repeat 1 56 0 267 31 0 0 chr6 157949166 157949198 -24466044 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 2341 72 19 7 chr6 157949912 157950219 -24465023 + AluY SINE Alu 1 311 0 263 68 68 0 chr6 157950310 157950369 -24464873 + CT-rich Low_complexity Low_complexity 2 64 0 437 218 153 16 chr6 157951074 157951198 -24464044 - L2 LINE L2 0 3313 3173 258 261 8 25 chr6 157951569 157951688 -24463554 + (CACCC)n Simple_repeat Simple_repeat 4 120 0 1773 116 0 61 chr6 157951705 157951982 -24463260 - AluSx SINE Alu -52 260 1 23 33 0 0 chr6 157953232 157953262 -24461980 + AT_rich Low_complexity Low_complexity 1 30 0 194 213 188 25 chr6 157954844 157954924 -24460318 + MER5A DNA MER1_type 40 132 -57 842 176 0 27 chr6 157954925 157955073 -24460169 - FRAM SINE Alu -15 161 18 1951 150 4 0 chr6 157955119 157955443 -24459799 - AluJb SINE Alu 0 326 2 27 29 0 0 chr6 157956715 157956749 -24458493 + AT_rich Low_complexity Low_complexity 1 34 0 210 393 14 35 chr6 158057675 158057820 -24357422 - L2 LINE L2 -12 3260 3119 450 301 80 30 chr6 158059482 158059681 -24355561 - L2 LINE L2 -1033 2281 2073 303 135 0 0 chr6 158059749 158059801 -24355441 - L1MB1 LINE L1 0 6168 6117 4655 98 35 17 chr6 158059962 158060676 -24354566 - L1PA11 LINE L1 -1 6173 5447 715 130 0 0 chr6 158060676 158060784 -24354458 - L1MB1 LINE L1 -33 6135 6028 209 32 0 32 chr6 158061165 158061196 -24354046 + (TA)n Simple_repeat Simple_repeat 1 30 0 21 43 0 22 chr6 158061379 158061405 -24353837 + AT_rich Low_complexity Low_complexity 1 27 -18 879 207 0 18 chr6 158061405 158061574 -24353668 + FAM SINE Alu 1 166 -9 21 43 0 22 chr6 158061574 158061593 -24353649 + AT_rich Low_complexity Low_complexity 27 45 0 222 254 0 0 chr6 158061642 158061709 -24353533 + CT-rich Low_complexity Low_complexity 2 68 0 743 174 22 11 chr6 158061727 158061905 -24353337 + CT-rich Low_complexity Low_complexity 1 180 0 264 185 0 0 chr6 158062189 158062243 -24352999 + CT-rich Low_complexity Low_complexity 3 56 0 1676 284 102 24 chr6 158062641 158063390 -24351852 + L2 LINE L2 2000 2806 -508 40 21 0 0 chr6 158063516 158063563 -24351679 + AT_rich Low_complexity Low_complexity 1 47 0 197 315 34 11 chr6 158064373 158064462 -24350780 + L2 LINE L2 2890 2980 -292 329 321 36 88 chr6 158064470 158064744 -24350498 - MIR SINE MIR -2 260 1 3343 175 42 20 chr6 158065010 158065706 -24349536 - L1PB4 LINE L1 -8 6148 5438 3575 27 2 0 chr6 158065706 158066247 -24348995 + L1P2 LINE L1 5138 5679 -476 209 71 0 0 chr6 158066405 158066433 -24348809 + (GA)n Simple_repeat Simple_repeat 2 29 0 337 219 49 37 chr6 158066433 158066515 -24348727 + MLT1L LTR MaLR 432 514 -101 430 294 40 0 chr6 158066572 158066698 -24348544 + MIR SINE MIR 2 132 -130 406 298 82 13 chr6 158068082 158068240 -24347002 + MIR SINE MIR 89 257 -5 21 36 0 0 chr6 158069094 158069122 -24346120 + AT_rich Low_complexity Low_complexity 1 28 0 796 327 89 24 chr6 158069717 158070087 -24345155 - L3 LINE CR1 -5 1572 1179 196 363 104 7 chr6 158070100 158070235 -24345007 - L2 LINE L2 -4 3268 3121 24 0 0 0 chr6 158070865 158070889 -24344353 + AT_rich Low_complexity Low_complexity 1 24 0 369 359 16 0 chr6 158070954 158071082 -24344160 - MIR SINE MIR -41 221 92 280 350 35 14 chr6 158073896 158074039 -24341203 + MIR SINE MIR 117 262 0 222 235 0 0 chr6 158074995 158075046 -24340196 + (TA)n Simple_repeat Simple_repeat 1 51 0 23 92 0 0 chr6 158075102 158075167 -24340075 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr6 158076463 158076486 -24338756 + AT_rich Low_complexity Low_complexity 1 23 0 180 321 0 18 chr6 158078054 158078110 -24337132 + MIR SINE MIR 29 83 -179 183 380 10 20 chr6 158078135 158078235 -24337007 + L2 LINE L2 3197 3295 -18 345 311 37 37 chr6 158078273 158078315 -24336927 + MIR SINE MIR 102 143 -119 1746 166 7 3 chr6 158078315 158078604 -24336638 - AluJb SINE Alu -22 290 1 345 311 37 37 chr6 158078604 158078722 -24336520 + MIR SINE MIR 142 262 0 972 224 221 40 chr6 158080990 158081520 -24333722 - MLT1E2 LTR MaLR 0 626 1 33694 64 6 1 chr6 158081749 158086083 -24329159 + L1PA5 LINE L1 11 4366 -1780 8502 48 0 1 chr6 158086207 158088037 -24327205 + L1PA5 LINE L1 4315 6146 -8 2560 202 6 12 chr6 158088037 158088738 -24326504 - L1P5 LINE L1 -707 5449 4752 15120 98 10 1 chr6 158088857 158091865 -24323377 + L1PA7 LINE L1 3143 6154 0 4163 168 18 0 chr6 158091865 158092595 -24322647 + L1PA16 LINE L1 5413 6157 -9 214 177 76 25 chr6 158093022 158093116 -24322126 + (TATATG)n Simple_repeat Simple_repeat 1 98 0 1658 225 38 79 chr6 158095088 158095622 -24319620 - MLT2B1 LTR ERVL -8 512 1 1462 332 87 25 chr6 158096225 158097089 -24318153 - L2 LINE L2 -556 2758 1842 930 253 99 61 chr6 158098875 158099429 -24315813 - L2 LINE L2 -1467 1847 1273 1403 79 0 26 chr6 158099468 158099658 -24315584 - AluSg/x SINE Alu -2 310 126 699 128 0 0 chr6 158099828 158099937 -24315305 + L1PA15 LINE L1 6049 6157 -8 33442 61 59 4 chr6 158101425 158106294 -24308948 + L1P2 LINE L1 635 5780 -375 270 332 97 61 chr6 158106572 158107078 -24308164 - L1MEd LINE L1 -5281 838 315 201 202 11 22 chr6 158107372 158107461 -24307781 + (TA)n Simple_repeat Simple_repeat 2 89 0 399 219 97 0 chr6 158107552 158107666 -24307576 - LTR65 LTR ERV1 -105 564 440 1521 249 47 34 chr6 158107742 158108276 -24306966 - L1M4c LINE L1 -4523 2211 1671 * 2464 237 46 9 chr6 158108273 158108970 -24306272 + L1M3c LINE L1 838 1560 -4581 584 299 94 36 chr6 158108971 158109348 -24305894 - L1M4c LINE L1 -5007 1646 1288 236 293 40 40 chr6 158109676 158109775 -24305467 - L1M4c LINE L1 -5782 871 773 31 107 0 0 chr6 158111728 158111850 -24303392 + AT_rich Low_complexity Low_complexity 1 122 0 524 110 0 0 chr6 158111970 158112075 -24303167 - AluSg/x SINE Alu 0 316 212 247 244 26 0 chr6 158112954 158113032 -24302210 + MER116 DNA Mariner 1 80 0 2112 144 33 25 chr6 158113178 158113539 -24301703 + THE1B LTR MaLR 1 364 0 9585 115 18 4 chr6 158113539 158114898 -24300344 + THE1B-int LTR MaLR 1 1378 -202 814 91 0 9 chr6 158114901 158115011 -24300231 + THE1B LTR MaLR 256 364 0 300 111 111 0 chr6 158115278 158115332 -24299910 + L1MA4A LINE L1 5723 5782 -518 1678 176 21 5 chr6 158115372 158115803 -24299439 + L1MA4A LINE L1 5782 6280 -23 241 374 9 9 chr6 158117713 158117820 -24297422 - L2 LINE L2 -10 3303 3197 23 33 0 0 chr6 158119675 158119705 -24295537 + AT_rich Low_complexity Low_complexity 1 30 0 255 342 117 40 chr6 158119798 158120020 -24295222 - MIR SINE MIR -6 256 18 1850 221 7 5 chr6 158123099 158123524 -24291718 + L1 LINE L1 4059 4484 -1662 616 304 126 13 chr6 158123561 158124094 -24291148 + L1ME3 LINE L1 5349 5941 -221 801 294 102 16 chr6 158124109 158124480 -24290762 + L1M4b LINE L1 21 423 -6436 653 130 0 0 chr6 158124493 158124601 -24290641 + Tigger3(Golem) DNA MER2_type 221 328 -2701 1052 265 26 26 chr6 158124609 158124994 -24290248 + L1M4b LINE L1 2025 2409 -4550 335 273 72 92 chr6 158125182 158125370 -24289872 + L1M4b LINE L1 2605 2786 -4173 180 0 0 0 chr6 158125370 158125390 -24289852 + (CAA)n Simple_repeat Simple_repeat 2 21 0 335 273 72 92 chr6 158125390 158125505 -24289737 + L1M4b LINE L1 2786 2902 -4057 27 0 0 0 chr6 158126246 158126273 -24288969 + AT_rich Low_complexity Low_complexity 1 27 0 489 17 0 0 chr6 158126391 158126449 -24288793 + (CA)n Simple_repeat Simple_repeat 2 59 0 214 125 42 0 chr6 158127005 158127053 -24288189 + (TA)n Simple_repeat Simple_repeat 2 51 0 180 0 0 0 chr6 158127053 158127073 -24288169 + (GA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr6 158128468 158128497 -24286745 + AT_rich Low_complexity Low_complexity 1 29 0 2302 88 0 44 chr6 158129194 158129511 -24285731 + AluSq SINE Alu 2 304 -9 26 50 0 0 chr6 158130557 158130597 -24284645 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr6 158131636 158131668 -24283574 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr6 158132266 158132315 -24282927 + AT_rich Low_complexity Low_complexity 1 49 0 15325 119 9 39 chr6 158133118 158136333 -24278909 - L1P3 LINE L1 -2975 3486 316 214 146 0 49 chr6 158136699 158136740 -24278502 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 224 359 38 0 chr6 158136906 158137012 -24278230 + MIR3 SINE MIR 99 208 0 237 224 0 0 chr6 158137117 158137175 -24278067 + CT-rich Low_complexity Low_complexity 1 58 0 808 278 0 0 chr6 158138123 158138285 -24276957 + MER45A DNA AcHobo 16 177 -1 258 302 112 59 chr6 158138421 158138590 -24276652 - MIR3 SINE MIR -13 195 18 26 0 0 0 chr6 158140017 158140043 -24275199 + AT_rich Low_complexity Low_complexity 1 26 0 261 0 0 0 chr6 158140086 158140115 -24275127 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr6 158140560 158140589 -24274653 + AT_rich Low_complexity Low_complexity 1 29 0 413 341 65 0 chr6 158140720 158140890 -24274352 + MIR SINE MIR 13 193 -69 2486 116 11 6 chr6 158142091 158142453 -24272789 + THE1B LTR MaLR 1 364 0 291 28 0 0 chr6 158142890 158142926 -24272316 + (CA)n Simple_repeat Simple_repeat 1 36 0 361 383 82 12 chr6 158143254 158143497 -24271745 + MIR SINE MIR 3 262 0 2226 100 0 3 chr6 158143577 158143866 -24271376 + AluSx SINE Alu 9 296 -16 2228 128 29 32 chr6 158144003 158144379 -24270863 - THE1C LTR MaLR 0 375 1 9752 117 29 43 chr6 158144379 158145980 -24269262 - THE1C-int LTR MaLR 0 1580 2 2299 100 38 24 chr6 158145981 158146351 -24268891 - THE1C LTR MaLR 0 375 1 2382 100 0 0 chr6 158149110 158149420 -24265822 + AluSg SINE Alu 1 310 0 353 183 84 0 chr6 158150330 158150401 -24264841 + LTR8 LTR ERV1 1 77 -614 * 397 158 33 117 chr6 158150377 158150497 -24264745 + LTR8A LTR ERV1 618 727 0 209 231 46 9 chr6 158151472 158151580 -24263662 + (TA)n Simple_repeat Simple_repeat 2 113 0 1792 163 0 10 chr6 158152521 158152822 -24262420 + AluSx SINE Alu 1 298 -14 298 279 93 23 chr6 158153065 158153284 -24261958 - L1ME3A LINE L1 -196 5966 5738 225 383 19 9 chr6 158153338 158153445 -24261797 - L3 LINE CR1 -27 1550 1443 28 29 0 0 chr6 158154469 158154504 -24260738 + AT_rich Low_complexity Low_complexity 1 35 0 1980 171 23 3 chr6 158154915 158155267 -24259975 + MLT1A1 LTR MaLR 7 365 0 387 380 0 8 chr6 158155491 158155612 -24259630 - L2 LINE L2 -7 3265 3146 350 339 40 8 chr6 158155704 158155828 -24259414 + L2 LINE L2 2713 2840 -474 * 501 249 57 40 chr6 158155796 158155973 -24259269 + MIR SINE MIR 81 260 -2 340 272 29 98 chr6 158156191 158156437 -24258805 + L2 LINE L2 3079 3307 -6 1757 221 11 21 chr6 158159660 158160035 -24255207 - MLT1A2 LTR MaLR 0 374 4 206 217 50 33 chr6 158160837 158160897 -24254345 + GA-rich Low_complexity Low_complexity 5 65 0 2081 151 62 42 chr6 158161165 158161570 -24253672 + MSTA LTR MaLR 5 417 -11 712 214 86 77 chr6 158161670 158161983 -24253259 + MER5C DNA MER1_type 9 324 0 21259 33 5 0 chr6 158162607 158165976 -24249266 + L1PA3 LINE L1 2772 6155 0 377 271 28 14 chr6 158166110 158166254 -24248988 + L1MC4 LINE L1 7748 7893 -149 2018 142 3 0 chr6 158166549 158166845 -24248397 - AluSx SINE Alu -15 297 1 447 224 21 56 chr6 158166847 158167033 -24248209 + L1MEc LINE L1 1800 1959 -4467 633 279 26 0 chr6 158167035 158167189 -24248053 - MER58B DNA MER1_type -1 340 183 555 283 116 0 chr6 158167395 158167568 -24247674 + MIR SINE MIR 59 251 -11 28 71 0 0 chr6 158168361 158168417 -24246825 + AT_rich Low_complexity Low_complexity 1 56 0 288 257 74 71 chr6 158168511 158168877 -24246365 - HAL1 LINE L1 -135 2372 2006 534 243 46 0 chr6 158168905 158169057 -24246185 - HAL1 LINE L1 -966 1541 1383 1213 233 3 9 chr6 158169099 158169416 -24245826 - L1 LINE L1 -852 5294 4980 795 184 0 0 chr6 158170323 158170464 -24244778 - L1P LINE L1 -1165 4981 4841 * 5357 126 16 8 chr6 158170462 158171318 -24243924 + L1PA16 LINE L1 5304 6166 0 398 324 82 45 chr6 158171392 158171636 -24243606 - HAL1 LINE L1 -1216 1291 1039 25 51 0 0 chr6 158171995 158172034 -24243208 + AT_rich Low_complexity Low_complexity 1 39 0 240 86 0 0 chr6 158172142 158172177 -24243065 + (TG)n Simple_repeat Simple_repeat 2 36 0 254 309 9 9 chr6 158172430 158172540 -24242702 + L1ME4a LINE L1 5957 6066 -55 22 35 0 0 chr6 158172562 158172591 -24242651 + AT_rich Low_complexity Low_complexity 1 29 0 282 315 42 21 chr6 158173668 158173811 -24241431 + MIR SINE MIR 96 241 -21 1238 277 55 62 chr6 158177556 158178102 -24237140 - MLT1F LTR MaLR 0 542 1 211 221 78 26 chr6 158178259 158178336 -24236906 + MIR SINE MIR 109 189 -73 301 321 51 70 chr6 158178708 158178923 -24236319 + L3 LINE CR1 1028 1238 -339 195 292 26 71 chr6 158178920 158178956 -24236286 + MIR SINE MIR 50 86 -176 * 1816 144 70 25 chr6 158178956 158179311 -24235931 + THE1C LTR MaLR 1 371 -4 195 292 26 71 chr6 158179311 158179387 -24235855 + MIR SINE MIR 86 157 -105 23 0 0 0 chr6 158180195 158180218 -24235024 + AT_rich Low_complexity Low_complexity 1 23 0 411 267 154 58 chr6 158180296 158180900 -24234342 + HAL1b LINE L1 73 734 -614 235 274 0 0 chr6 158180912 158180974 -24234268 - MIR SINE MIR -10 252 191 29 47 0 0 chr6 158181303 158181346 -24233896 + AT_rich Low_complexity Low_complexity 1 43 0 2176 129 0 0 chr6 158181347 158181642 -24233600 - AluSq SINE Alu -18 295 1 2059 157 0 0 chr6 158182387 158182699 -24232543 + AluSx SINE Alu 1 312 0 304 271 56 56 chr6 158182852 158182996 -24232246 + L1MEc LINE L1 796 939 -5457 969 196 48 150 chr6 158183607 158184067 -24231175 + L1MC4 LINE L1 7225 7637 -405 28761 144 46 12 chr6 158184067 158189007 -24226235 + L1PA10 LINE L1 4 5110 -1036 5446 108 24 0 chr6 158188988 158189778 -24225464 + L1PA10 LINE L1 5314 6122 -46 * 1759 65 0 65 chr6 158190146 158190425 -24224817 - AluY SINE Alu 0 318 56 572 329 122 44 chr6 158190447 158191079 -24224163 + L1MEd LINE L1 12 692 -5427 1485 204 76 42 chr6 158191079 158191486 -24223756 + L1MC4a LINE L1 6687 7107 -701 1369 196 24 92 chr6 158191479 158191903 -24223339 + L1MC4a LINE L1 7414 7808 0 * 657 227 12 35 chr6 158192046 158192218 -24223024 + MER46C DNA MER2_type 1 168 -170 341 307 90 37 chr6 158192280 158192469 -24222773 - LTR33 LTR ERVL -308 213 15 1485 179 23 23 chr6 158192542 158192843 -24222399 + AluJo SINE Alu 1 301 -11 21 71 0 0 chr6 158192876 158192918 -24222324 + AT_rich Low_complexity Low_complexity 1 42 0 378 261 99 94 chr6 158193145 158194396 -24220846 + L1MEd LINE L1 2155 3411 -2718 6057 98 14 0 chr6 158195106 158196088 -24219154 + L1PA13 LINE L1 5151 6144 -19 228 174 0 0 chr6 158196119 158196165 -24219077 + LTR66 LTR ERVL 394 439 -171 419 0 20 0 chr6 158198519 158198570 -24216672 + (CA)n Simple_repeat Simple_repeat 2 53 0 284 339 39 39 chr6 158199638 158199768 -24215474 + MIR SINE MIR 41 170 -92 275 240 40 0 chr6 158199854 158199929 -24215313 + CT-rich Low_complexity Low_complexity 6 83 0 198 0 0 0 chr6 158200471 158200493 -24214749 + (A)n Simple_repeat Simple_repeat 1 22 0 657 256 14 76 chr6 158203788 158204011 -24211231 - MER63A DNA MER1_type -1 209 1 21 36 0 0 chr6 158204043 158204071 -24211171 + AT_rich Low_complexity Low_complexity 1 28 0 270 291 48 18 chr6 158204257 158204422 -24210820 - L1ME4a LINE L1 -16 6105 5936 510 309 46 23 chr6 158206308 158206657 -24208585 + HAL1 LINE L1 998 1354 -1153 521 313 136 0 chr6 158206706 158206949 -24208293 + HAL1 LINE L1 1606 1881 -626 204 40 0 0 chr6 158207027 158207052 -24208190 + (TA)n Simple_repeat Simple_repeat 1 25 0 940 195 29 0 chr6 158207289 158207463 -24207779 - MER20 DNA MER1_type -38 181 3 2743 10 0 0 chr6 158207501 158207804 -24207438 + AluYa5 SINE Alu 1 303 -8 725 252 52 5 chr6 158207927 158208137 -24207105 - L1ME2 LINE L1 -47 6117 5898 21 36 0 0 chr6 158211231 158211259 -24203983 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 158213447 158213469 -24201773 + AT_rich Low_complexity Low_complexity 1 22 0 708 142 0 0 chr6 158213661 158213767 -24201475 + U6 snRNA snRNA 2 107 0 3673 256 19 38 chr6 158213767 158215262 -24199980 + L1 LINE L1 1808 3193 -2953 2506 59 0 0 chr6 158316111 158316417 -24098825 + AluY SINE Alu 1 306 -5 834 189 15 60 chr6 158316423 158316624 -24098618 + MER4B-int LTR ERV1 532 723 -6035 1176 166 25 56 chr6 158316727 158317011 -24098231 + MER4B-int LTR ERV1 698 972 -5786 2234 108 0 9 chr6 158317025 158317340 -24097902 + AluSx SINE Alu 1 312 0 560 155 86 0 chr6 158319738 158319854 -24095388 - L1MB7 LINE L1 -15 6169 6044 1063 175 44 15 chr6 158320921 158321079 -24094163 - AluSq SINE Alu -17 296 129 2324 77 7 0 chr6 158321079 158321376 -24093866 - AluSp SINE Alu -14 299 1 1063 175 44 15 chr6 158321376 158321423 -24093819 - AluSq SINE Alu -184 129 85 853 177 0 0 chr6 158321423 158321553 -24093689 - AluJb SINE Alu -55 257 128 1570 154 38 27 chr6 158321573 158321866 -24093376 - AluJo SINE Alu -16 296 1 220 281 14 65 chr6 158321957 158322096 -24093146 + C-rich Low_complexity Low_complexity 6 137 0 369 312 30 24 chr6 158322243 158322466 -24092776 + CT-rich Low_complexity Low_complexity 1 224 0 282 330 28 0 chr6 158325138 158325244 -24089998 + L2 LINE L2 2048 2156 -1158 366 264 88 24 chr6 158325807 158325932 -24089310 + L2 LINE L2 3175 3307 -6 294 375 0 17 chr6 158325916 158326036 -24089206 - MIR SINE MIR -125 137 20 * 833 274 111 51 chr6 158326014 158326482 -24088760 + L2 LINE L2 2201 2696 -618 961 224 12 50 chr6 158326483 158326742 -24088500 + MLT1A2 LTR MaLR 1 249 -125 2199 103 3 3 chr6 158326784 158327084 -24088158 - AluSg SINE Alu -10 300 1 1773 107 37 15 chr6 158327521 158327793 -24087449 + AluSx SINE Alu 30 307 -5 376 333 27 10 chr6 158329988 158330348 -24084894 + CT-rich Low_complexity Low_complexity 1 366 0 2529 32 6 19 chr6 158331478 158331791 -24083451 - AluY SINE Alu -2 309 1 202 233 0 0 chr6 158331802 158331845 -24083397 - L2 LINE L2 -8 3305 3263 180 179 90 15 chr6 158331815 158331882 -24083360 - MIR SINE MIR -15 247 176 * 793 125 23 0 chr6 158331955 158332083 -24083159 - AluJb SINE Alu -5 307 177 266 0 0 29 chr6 158332111 158332146 -24083096 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1797 138 0 57 chr6 158333195 158333513 -24081729 + AluSx SINE Alu 1 300 -12 209 287 105 25 chr6 158333954 158334087 -24081155 + MER5A DNA MER1_type 13 143 -35 2594 55 0 0 chr6 158334594 158334905 -24080337 - AluY SINE Alu 0 311 1 2017 155 3 0 chr6 158335975 158336272 -24078970 + AluSq SINE Alu 1 298 -15 427 46 46 0 chr6 158336277 158336342 -24078900 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 405 304 83 33 chr6 158337050 158337231 -24078011 + MIR SINE MIR 23 212 -50 739 191 18 100 chr6 158337238 158337458 -24077784 + MIR SINE MIR 58 259 -3 201 121 0 0 chr6 158337485 158337518 -24077724 + (CAT)n Simple_repeat Simple_repeat 1 33 0 381 307 20 27 chr6 158338000 158338150 -24077092 - L3 LINE CR1 -168 1409 1261 973 284 135 54 chr6 158338638 158339156 -24076086 + MLT1K LTR MaLR 2 561 -27 947 315 29 29 chr6 158339489 158339867 -24075375 - L3 LINE CR1 -763 814 437 439 298 25 67 chr6 158340755 158340993 -24074249 - MIR SINE MIR -7 255 28 359 352 8 16 chr6 158343254 158343382 -24071860 - MIR SINE MIR -66 142 16 2497 160 10 2 chr6 158343426 158343826 -24071416 - MER57A LTR ERV1 0 403 1 909 266 189 38 chr6 158343934 158344385 -24070857 - LTR33 LTR ERVL -2 519 1 2324 84 0 0 chr6 158345350 158345666 -24069576 - AluSq SINE Alu 0 316 1 1031 145 0 0 chr6 158348728 158348873 -24066369 + L1PB4 LINE L1 6001 6145 -11 305 24 24 0 chr6 158348886 158348928 -24066314 + (TG)n Simple_repeat Simple_repeat 2 44 0 369 344 19 16 chr6 158349072 158349245 -24065997 - MIR SINE MIR -62 146 6 426 69 0 0 chr6 158349396 158349454 -24065788 + (CA)n Simple_repeat Simple_repeat 1 58 0 622 259 31 85 chr6 158349736 158350029 -24065213 - MER102b DNA MER1_type -32 309 33 2228 107 0 0 chr6 158350041 158350339 -24064903 - AluSx SINE Alu -14 298 1 2014 127 3 3 chr6 158350744 158351035 -24064207 + AluSx SINE Alu 1 291 -21 353 337 36 18 chr6 158351141 158351307 -24063935 + MIR SINE MIR 7 175 -87 25 0 0 0 chr6 158351884 158351909 -24063333 + AT_rich Low_complexity Low_complexity 1 25 0 502 141 0 13 chr6 158351914 158351992 -24063250 + MADE1 DNA Mariner 1 77 -3 246 179 0 0 chr6 158351996 158352052 -24063190 - L1MC4 LINE L1 -1339 6703 6648 602 304 134 7 chr6 158352151 158352434 -24062808 + L1ME1 LINE L1 45 363 -6033 3113 228 21 21 chr6 158352479 158353338 -24061904 + L1ME1 LINE L1 2202 3060 -3155 1135 247 28 3 chr6 158353393 158353676 -24061566 + L1ME1 LINE L1 3433 3722 -2493 3559 230 59 11 chr6 158353690 158354966 -24060276 + L1ME1 LINE L1 4894 6229 -6 456 273 25 7 chr6 158355304 158355464 -24059778 + L1ME1 LINE L1 5397 5563 -599 923 227 53 16 chr6 158355471 158355718 -24059524 + L1ME1 LINE L1 5904 6159 -7 226 348 0 0 chr6 158355815 158355904 -24059338 - HAL1 LINE L1 -342 2165 2077 2722 171 44 35 chr6 158355940 158356222 -24059020 - MER89 LTR ERV1 0 559 281 4037 88 2 8 chr6 158356222 158356736 -24058506 - MER9 LTR ERVK 0 511 1 2722 171 44 35 chr6 158356736 158356784 -24058458 - MER89 LTR ERV1 -278 281 235 2740 38 3 6 chr6 158356784 158357099 -24058143 - L1PA7 LINE L1 -1 6153 5840 2722 171 44 35 chr6 158357099 158357317 -24057925 - MER89 LTR ERV1 -324 235 5 695 264 45 76 chr6 158357459 158357789 -24057453 - HAL1 LINE L1 -677 1830 1511 2048 93 0 74 chr6 158357790 158358101 -24057141 - AluSc SINE Alu -14 295 8 2081 148 97 49 chr6 158358102 158358527 -24056715 + MER67D LTR ERV1 68 512 -2 30 77 0 0 chr6 158358949 158359014 -24056228 + AT_rich Low_complexity Low_complexity 1 65 0 337 276 221 36 chr6 158359521 158359720 -24055522 + MIR SINE MIR 30 262 0 1450 220 73 63 chr6 158359793 158360330 -24054912 + MER34 LTR ERV1 1 542 0 822 261 86 50 chr6 158360402 158360801 -24054441 + LTR38B LTR ERV1 49 493 -117 3392 97 7 0 chr6 158360801 158361232 -24054010 + MER57B LTR ERV1 1 434 0 822 261 86 50 chr6 158361232 158361355 -24053887 + LTR38B LTR ERV1 493 610 0 963 189 12 0 chr6 158361430 158361599 -24053643 - MER105 DNA DNA -2 202 32 248 331 31 8 chr6 158361675 158361802 -24053440 + L1MC4a LINE L1 5793 5922 -1886 180 97 0 0 chr6 158361891 158361922 -24053320 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 670 139 0 165 chr6 158362567 158362725 -24052517 - Tigger3(Golem) DNA MER2_type 0 3029 2898 292 228 18 0 chr6 158362733 158362790 -24052452 - Tigger3(Golem) DNA MER2_type -2971 58 1 1188 241 100 9 chr6 158363024 158363543 -24051699 - MLT2E LTR ERVL 0 628 10 359 321 79 26 chr6 158363867 158364057 -24051185 - L2 LINE L2 -2 3311 3112 481 126 103 0 chr6 158364073 158364160 -24051082 - L1MA4A LINE L1 -20 6283 6188 508 99 12 12 chr6 158364163 158364244 -24050998 - L1MA4A LINE L1 -181 6122 6042 483 255 159 38 chr6 158364248 158364487 -24050755 - L2 LINE L2 -217 3096 2829 624 262 80 34 chr6 158365419 158365656 -24049586 - MIR SINE MIR -13 249 2 1463 219 2 81 chr6 158365732 158365986 -24049256 - MLT1A2 LTR MaLR 0 374 162 2270 83 0 17 chr6 158365986 158366287 -24048955 + AluSc SINE Alu 1 296 -13 1463 219 2 81 chr6 158366287 158366438 -24048804 - MLT1A2 LTR MaLR -212 162 1 472 257 68 20 chr6 158366495 158366643 -24048599 - MIR SINE MIR -15 247 93 1361 159 84 90 chr6 158366707 158366875 -24048367 + MER2 DNA MER2_type 2 169 -176 922 200 7 7 chr6 158366875 158367030 -24048212 + FRAM SINE Alu 1 155 -11 1361 159 84 90 chr6 158367030 158367206 -24048036 + MER2 DNA MER2_type 169 344 -1 677 219 15 0 chr6 158367320 158367457 -24047785 - MLT1J1 LTR MaLR -306 140 2 14247 128 23 13 chr6 158368021 158369453 -24045789 - Tigger1 DNA MER2_type 0 2418 953 2460 60 7 0 chr6 158369453 158369751 -24045491 + AluY SINE Alu 1 300 -11 14247 128 23 13 chr6 158369751 158370553 -24044689 - Tigger1 DNA MER2_type -1465 953 161 24158 169 14 23 chr6 158370553 158375403 -24039839 + L1PA11 LINE L1 849 6468 -1144 2341 97 3 0 chr6 158375403 158375711 -24039531 + AluSp SINE Alu 1 309 -4 24158 169 14 23 chr6 158375711 158376744 -24038498 + L1PA11 LINE L1 6468 7508 -104 2371 214 118 20 chr6 158376748 158377407 -24037835 + MER50 LTR ERV1 11 734 0 853 83 0 0 chr6 158377407 158377516 -24037726 + L1PA11 LINE L1 6064 6172 -2 1042 176 22 0 chr6 158377550 158377732 -24037510 - Tigger1 DNA MER2_type -2232 186 1 3046 176 23 13 chr6 158377918 158378222 -24037020 + L1M2 LINE L1 4770 5069 -1243 2207 50 0 8 chr6 158378222 158378484 -24036758 - AluY SINE Alu -12 299 40 3046 176 23 13 chr6 158378484 158379198 -24036044 + L1M2 LINE L1 5069 5799 -513 263 252 0 48 chr6 158379178 158379281 -24035961 + L1MA8 LINE L1 6182 6279 -12 * 348 314 185 14 chr6 158379413 158379700 -24035542 - MER102b DNA MER1_type 0 341 6 71 87 0 0 chr6 158380497 158380680 -24034562 + AT_rich Low_complexity Low_complexity 1 183 0 1653 181 7 4 chr6 158381338 158381615 -24033627 - AluJb SINE Alu -34 278 1 501 294 101 50 chr6 158382108 158382612 -24032630 + HAL1 LINE L1 1826 2355 -152 927 298 147 35 chr6 158382629 158383290 -24031952 - Charlie7 DNA MER1_type -1853 759 25 462 299 31 10 chr6 158383780 158383974 -24031268 + MLT1F LTR MaLR 1 198 -344 918 231 137 32 chr6 158384249 158384681 -24030561 + Charlie7 DNA MER1_type 2136 2612 0 1646 158 0 79 chr6 158384708 158385024 -24030218 - AluJo SINE Alu -21 291 1 255 260 227 45 chr6 158385149 158385303 -24029939 - MIR SINE MIR -62 200 19 376 305 14 56 chr6 158385387 158385600 -24029642 + HsTC2a DNA Tc2 17 220 -524 1268 169 13 38 chr6 158385847 158385907 -24029335 + AluJb SINE Alu 64 124 -188 1822 179 0 7 chr6 158385907 158386203 -24029039 - AluJb SINE Alu -18 294 1 1268 169 13 38 chr6 158386203 158386378 -24028864 + AluJb SINE Alu 124 293 -19 2520 189 39 57 chr6 158386509 158387071 -24028171 - MER54A LTR ERVL -349 552 1 2081 194 65 14 chr6 158387168 158387600 -24027642 + MLT1C LTR MaLR 7 460 -7 353 233 180 13 chr6 158387964 158388114 -24027128 - LTR41 LTR ERVL -598 175 1 803 157 6 45 chr6 158388239 158388417 -24026825 - Charlie4a DNA MER1_type 0 508 338 1917 161 3 7 chr6 158388417 158388727 -24026515 + AluJo SINE Alu 1 309 -3 1086 208 79 46 chr6 158388752 158389129 -24026113 + MLT2B1 LTR ERVL 3 449 -71 195 146 0 0 chr6 158389138 158389179 -24026063 + (CA)n Simple_repeat Simple_repeat 2 42 0 217 299 82 37 chr6 158389386 158389520 -24025722 + L2 LINE L2 3128 3267 -5 305 104 92 6 chr6 158389732 158389895 -24025347 + (TA)n Simple_repeat Simple_repeat 1 177 0 * 558 49 68 25 chr6 158389857 158390019 -24025223 + (TATAA)n Simple_repeat Simple_repeat 1 169 0 400 251 47 0 chr6 158390021 158390192 -24025050 + (TA)n Simple_repeat Simple_repeat 2 180 0 676 219 7 13 chr6 158390219 158390370 -24024872 - Charlie4a DNA MER1_type -177 331 182 1811 155 3 30 chr6 158390388 158390691 -24024551 - AluSx SINE Alu -17 295 1 644 121 30 8 chr6 158391191 158391323 -24023919 + GA-rich Low_complexity Low_complexity 1 135 0 660 168 68 37 chr6 158391323 158391484 -24023758 - Charlie4a DNA MER1_type -311 197 32 198 288 102 25 chr6 158392208 158392326 -24022916 - L2 LINE L2 -5 3267 3141 4598 92 14 5 chr6 158394103 158394735 -24020507 - L1PA11 LINE L1 -1 6173 5536 393 310 28 35 chr6 158396832 158396974 -24018268 - MER5B DNA MER1_type -3 175 35 638 182 33 0 chr6 158396978 158397099 -24018143 + MLT1E3 LTR MaLR 46 170 -454 2123 127 87 14 chr6 158397101 158397448 -24017794 - MER1A DNA MER1_type 0 529 158 402 109 0 0 chr6 158397456 158397511 -24017731 - MER1A DNA MER1_type -472 55 1 577 216 60 96 chr6 158397512 158397762 -24017480 + MLT2C1 LTR ERVL 145 385 -12 208 333 10 31 chr6 158398939 158399035 -24016207 + MIR3 SINE MIR 66 159 -49 1380 270 86 37 chr6 158399298 158399671 -24015571 - L2 LINE L2 -225 3088 2735 1307 189 21 129 chr6 158399671 158399788 -24015454 - MLT1A2 LTR MaLR 0 374 246 2326 101 3 0 chr6 158399788 158400086 -24015156 + AluSg SINE Alu 1 299 -11 1307 189 21 129 chr6 158400086 158400387 -24014855 - MLT1A2 LTR MaLR -128 246 1 1380 270 86 37 chr6 158400387 158400819 -24014423 - L2 LINE L2 -578 2735 2243 306 353 0 10 chr6 158400833 158400935 -24014307 + MIR SINE MIR 20 120 -142 349 235 108 0 chr6 158400937 158401039 -24014203 - L2 LINE L2 -6 3307 3195 252 0 0 0 chr6 158402521 158402549 -24012693 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7852 21 3 1 chr6 158402549 158404208 -24011034 - L1PA3 LINE L1 -1 6154 4493 2363 100 3 3 chr6 158405174 158405485 -24009757 + AluSp SINE Alu 1 311 -2 298 290 43 29 chr6 158406039 158406177 -24009065 + MIR3 SINE MIR 69 208 0 2403 83 0 17 chr6 158408307 158408607 -24006635 + AluSq SINE Alu 1 295 -18 186 133 0 0 chr6 158408989 158409019 -24006223 + (CACG)n Simple_repeat Simple_repeat 2 31 0 398 307 55 19 chr6 158410611 158410868 -24004374 + L1ME LINE L1 5483 5748 -373 2767 158 75 4 chr6 158410934 158411414 -24003828 + Tigger7 DNA MER2_type 8 521 -1966 425 202 0 32 chr6 158411415 158411509 -24003733 + Tigger7 DNA MER2_type 2401 2491 0 1460 114 65 4 chr6 158411644 158411889 -24003353 - L1MA8 LINE L1 -6 6285 6026 782 203 0 0 chr6 158411901 158412034 -24003208 - FLAM_A SINE Alu 0 133 1 231 198 58 35 chr6 158412064 158412150 -24003092 + L1ME4a LINE L1 6017 6104 -17 827 184 15 0 chr6 158412488 158412624 -24002618 - FRAM SINE Alu -35 141 4 261 0 0 0 chr6 158415541 158415570 -23999672 + (CA)n Simple_repeat Simple_repeat 1 29 0 2125 72 0 4 chr6 158415770 158416035 -23999207 + AluY SINE Alu 36 299 -12 519 323 81 0 chr6 158416634 158416795 -23998447 + MER96 DNA MER1_type? 2 175 0 733 174 31 164 chr6 158416802 158417089 -23998153 + MER112 DNA MER1_type 1 249 -11 2475 148 15 2 chr6 158418803 158419215 -23996027 + L1PB3 LINE L1 5738 6154 0 229 125 0 0 chr6 158419279 158419311 -23995931 + L1MA9 LINE L1 6277 6308 -4 504 0 0 0 chr6 158420589 158420645 -23994597 + (CA)n Simple_repeat Simple_repeat 1 56 0 337 177 0 0 chr6 158420942 158421004 -23994238 + L1MB2 LINE L1 6108 6169 -2 2260 102 0 0 chr6 158421782 158422100 -23993142 + AluSq SINE Alu 1 318 0 237 196 39 0 chr6 158425962 158426013 -23989229 - MIR SINE MIR -119 143 91 1775 140 41 0 chr6 158426058 158426350 -23988892 + AluJb SINE Alu 5 308 -4 286 299 28 9 chr6 158428170 158428277 -23986965 - L2 LINE L2 0 3313 3205 2299 112 0 0 chr6 158428321 158428624 -23986618 + AluSg SINE Alu 5 307 -3 507 195 89 8 chr6 158429082 158429205 -23986037 - MER20 DNA MER1_type 0 219 87 * 3907 108 6 0 chr6 158429200 158429720 -23985522 + MER1A DNA MER1_type 7 529 0 263 298 202 16 chr6 158430548 158430672 -23984570 + L2 LINE L2 3118 3264 -8 2246 75 0 0 chr6 158431286 158431554 -23983688 + AluY SINE Alu 37 304 -7 2263 108 3 16 chr6 158432061 158432375 -23982867 + AluSg SINE Alu 1 310 0 599 89 13 0 chr6 158434187 158434266 -23980976 + MADE1 DNA Mariner 1 80 0 225 0 0 0 chr6 158434299 158434324 -23980918 + (TA)n Simple_repeat Simple_repeat 1 25 0 427 250 1 3 chr6 158434378 158434488 -23980754 + MIR SINE MIR 36 144 -64 204 239 0 0 chr6 158434512 158434558 -23980684 + L2 LINE L2 3215 3260 -12 421 141 55 78 chr6 158441135 158441263 -23973979 + MIR SINE MIR 60 184 -78 622 278 30 55 chr6 158441569 158441838 -23973404 + MIR SINE MIR 3 261 -1 252 0 0 0 chr6 158443935 158443963 -23971279 + (T)n Simple_repeat Simple_repeat 1 28 0 2114 56 0 0 chr6 158446135 158446417 -23968825 + AluY SINE Alu 32 313 0 450 0 0 0 chr6 158447047 158447097 -23968145 + (TG)n Simple_repeat Simple_repeat 2 51 0 2282 105 3 3 chr6 158447404 158447708 -23967534 - AluSx SINE Alu -8 304 1 39 60 0 0 chr6 158447757 158447824 -23967418 + AT_rich Low_complexity Low_complexity 1 67 0 192 283 19 0 chr6 158450706 158450759 -23964483 - L3b LINE CR1 -1 1582 1529 1747 144 44 0 chr6 158450763 158451063 -23964179 + AluSx SINE Alu 1 312 0 2180 105 3 3 chr6 158451911 158452230 -23963012 - AluSq SINE Alu 0 319 1 1151 46 0 0 chr6 158452353 158452484 -23962758 + AluY SINE Alu 1 131 -180 2283 103 13 0 chr6 158452486 158452787 -23962455 + AluSg SINE Alu 1 305 -5 2152 123 10 0 chr6 158452811 158453111 -23962131 + AluSx SINE Alu 1 303 -9 206 230 242 39 chr6 158453194 158453372 -23961870 + MIR SINE MIR 29 242 -20 253 314 122 19 chr6 158454143 158454299 -23960943 + L2 LINE L2 2885 3056 -216 349 255 115 13 chr6 158454449 158454606 -23960636 - L1ME4a LINE L1 -2 6119 5947 670 240 85 58 chr6 158454863 158455226 -23960016 - L1ME4a LINE L1 -218 5903 5531 198 0 0 0 chr6 158457616 158457638 -23957604 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 22 35 0 0 chr6 158458497 158458526 -23956716 + AT_rich Low_complexity Low_complexity 1 29 0 249 228 0 53 chr6 158458924 158458981 -23956261 + L2 LINE L2 3218 3271 -1 708 85 0 0 chr6 158459282 158459376 -23955866 + AluSg/x SINE Alu 217 310 0 280 266 13 0 chr6 158459785 158459864 -23955378 - MER116 DNA Mariner 0 80 1 22 0 0 0 chr6 158459900 158459922 -23955320 + AT_rich Low_complexity Low_complexity 1 22 0 1738 140 30 82 chr6 158459991 158460320 -23954922 - AluJb SINE Alu 0 312 1 273 266 85 0 chr6 158460863 158460957 -23954285 - MIR SINE MIR -146 116 15 26 0 0 0 chr6 158461502 158461528 -23953714 + AT_rich Low_complexity Low_complexity 1 26 0 1867 134 67 0 chr6 158461529 158461812 -23953430 - AluJo SINE Alu -10 302 1 2115 73 0 42 chr6 158462291 158462578 -23952664 + AluSx SINE Alu 18 292 -20 197 0 0 67 chr6 158462958 158462988 -23952254 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1010 88 0 0 chr6 158463766 158463903 -23951339 - AluSc SINE Alu 0 309 173 24 32 0 0 chr6 158464175 158464206 -23951036 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr6 158464502 158464531 -23950711 + AT_rich Low_complexity Low_complexity 1 29 0 1997 127 3 14 chr6 158465545 158465886 -23949356 - AluSx SINE Alu 0 338 1 327 361 0 0 chr6 158465924 158466032 -23949210 + L2 LINE L2 3164 3271 -1 2199 122 0 0 chr6 158466852 158467155 -23948087 + AluSx SINE Alu 1 303 -9 2048 128 3 3 chr6 158467914 158468204 -23947038 + AluSg SINE Alu 1 290 -20 216 0 0 0 chr6 158468334 158468358 -23946884 + (TTA)n Simple_repeat Simple_repeat 2 25 0 603 182 107 0 chr6 158468377 158468498 -23946744 - FRAM SINE Alu -5 171 38 4626 203 32 28 chr6 158468499 158468534 -23946708 + L1MB3 LINE L1 4216 4249 -1934 333 0 0 0 chr6 158468534 158468571 -23946671 + (CA)n Simple_repeat Simple_repeat 2 38 0 4626 203 32 28 chr6 158468571 158470496 -23944746 + L1MB3 LINE L1 4249 6183 0 250 188 0 43 chr6 158471281 158471350 -23943892 + L1MC4 LINE L1 6638 6703 -1339 366 283 0 0 chr6 158471387 158471479 -23943763 + L1MC4 LINE L1 6612 6703 -1339 1763 148 13 36 chr6 158471484 158471788 -23943454 - AluJb SINE Alu -15 297 1 2126 119 13 0 chr6 158472001 158472303 -23942939 + AluSq SINE Alu 1 306 -7 276 313 0 3 chr6 158472781 158472861 -23942381 + MIR SINE MIR 77 154 -67 2000 149 0 7 chr6 158473461 158473762 -23941480 - AluJb SINE Alu -12 300 2 366 256 56 113 chr6 158474241 158474507 -23940735 - L3b LINE CR1 -172 1411 1161 674 191 89 107 chr6 158474791 158474964 -23940278 + LTR16A1 LTR ERVL 237 407 -50 2010 171 85 8 chr6 158474964 158475362 -23939880 + MSTB1 LTR MaLR 4 432 0 674 191 89 107 chr6 158475362 158475413 -23939829 + LTR16A1 LTR ERVL 407 457 0 2512 74 0 0 chr6 158475435 158475733 -23939509 + AluSx SINE Alu 3 300 -12 1018 183 0 0 chr6 158475733 158475897 -23939345 + AluJb SINE Alu 134 297 -15 4789 155 15 4 chr6 158476438 158477217 -23938025 + Tigger1 DNA MER2_type 1 788 -1630 534 198 0 10 chr6 158477248 158477344 -23937898 + Tigger1 DNA MER2_type 2322 2416 -2 1847 104 37 15 chr6 158478077 158478347 -23936895 - AluSx SINE Alu -7 305 30 2299 106 3 0 chr6 158479073 158479376 -23935866 + AluSq SINE Alu 1 304 -9 4825 103 9 4 chr6 158479727 158480425 -23934817 - L1MA3 LINE L1 -145 6160 5460 2338 99 3 0 chr6 158480425 158480729 -23934513 + AluSx SINE Alu 1 305 -7 1089 123 0 0 chr6 158480729 158480883 -23934359 + AluSg/x SINE Alu 134 287 -25 5626 161 31 21 chr6 158480883 158481712 -23933530 - L1MA3 LINE L1 -743 5403 4556 1628 138 14 33 chr6 158481712 158481988 -23933254 - AluSx SINE Alu -7 305 35 5626 161 31 21 chr6 158481988 158482466 -23932776 - L1MA3 LINE L1 -1590 4556 4084 1310 136 18 53 chr6 158482466 158482694 -23932548 + Tigger7 DNA MER2_type 2368 2587 0 787 205 44 70 chr6 158482792 158483165 -23932077 + MSTD LTR MaLR 3 396 0 1807 189 0 0 chr6 158483550 158483846 -23931396 + AluJb SINE Alu 1 296 -16 2187 123 0 3 chr6 158484870 158485179 -23930063 + AluSx SINE Alu 3 310 -2 220 159 0 45 chr6 158485905 158485949 -23929293 + CT-rich Low_complexity Low_complexity 6 47 0 270 56 0 0 chr6 158487008 158487044 -23928198 + (A)n Simple_repeat Simple_repeat 1 36 0 2282 123 0 0 chr6 158488366 158488676 -23926566 - AluSg SINE Alu 0 310 1 1673 174 17 7 chr6 158488678 158488965 -23926277 - AluJo SINE Alu -16 296 7 394 243 158 31 chr6 158489060 158489282 -23925960 - MIR SINE MIR -2 260 11 433 185 17 50 chr6 158489473 158489592 -23925650 - L1ME LINE L1 -301 5820 5706 * 463 210 171 15 chr6 158489584 158489789 -23925453 + L1ME4a LINE L1 5832 6068 -53 417 263 15 124 chr6 158490366 158490476 -23924766 - Charlie8 DNA MER1_type -104 237 169 2296 96 7 0 chr6 158490476 158490767 -23924475 - AluSx SINE Alu -19 293 1 417 263 15 124 chr6 158490767 158490915 -23924327 - Charlie8 DNA MER1_type -172 169 7 1872 126 0 0 chr6 158491072 158491333 -23923909 + AluSx SINE Alu 48 308 -4 1058 175 14 63 chr6 158491620 158491843 -23923399 + AluJo SINE Alu 72 283 -29 201 238 0 0 chr6 158492506 158492548 -23922694 + GA-rich Low_complexity Low_complexity 2 43 0 2156 111 30 0 chr6 158492855 158493152 -23922090 - AluSx SINE Alu -6 306 1 270 326 0 0 chr6 158494408 158494497 -23920745 - L2 LINE L2 0 3313 3225 553 284 180 27 chr6 158494556 158494922 -23920320 - L2 LINE L2 -861 2453 2032 2247 92 10 0 chr6 158494980 158495274 -23919968 + AluSx SINE Alu 1 297 -15 237 132 0 0 chr6 158496108 158496146 -23919096 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 294 224 58 121 chr6 158496738 158496912 -23918330 + MER96 DNA MER1_type? 1 163 -12 293 311 17 0 chr6 158497272 158497391 -23917851 + MIR SINE MIR 141 261 -1 283 318 12 0 chr6 158498323 158498408 -23916834 - L3b LINE CR1 -227 1356 1271 379 330 72 0 chr6 158498464 158498685 -23916557 + MIR SINE MIR 13 249 -13 360 0 0 0 chr6 158499398 158499438 -23915804 + (TG)n Simple_repeat Simple_repeat 2 41 0 1605 168 20 27 chr6 158499442 158499739 -23915503 - AluJo SINE Alu -17 295 1 289 218 68 75 chr6 158499944 158500091 -23915151 + MLT1J LTR MaLR 14 159 -352 237 274 162 17 chr6 158500207 158500324 -23914918 + MLT1J LTR MaLR 283 416 -95 2101 108 13 20 chr6 158500439 158500745 -23914497 + THE1C LTR MaLR 72 375 0 337 268 14 92 chr6 158500863 158501005 -23914237 - MIR SINE MIR -62 146 16 224 420 0 0 chr6 158500992 158501080 -23914162 + L2 LINE L2 3139 3226 -46 * 1787 132 3 31 chr6 158501520 158501840 -23913402 - AluJb SINE Alu 0 315 4 329 286 65 13 chr6 158503139 158503293 -23911949 - MER5B DNA MER1_type -16 162 1 1232 271 104 35 chr6 158503945 158504564 -23910678 + MLT2F LTR ERVL 1 662 -1 321 280 154 14 chr6 158504873 158505016 -23910226 + MIR SINE MIR 48 210 -52 259 349 175 11 chr6 158505735 158505924 -23909318 - MIR SINE MIR -19 243 24 238 289 24 0 chr6 158506015 158506098 -23909144 - MIR3 SINE MIR -24 184 100 186 43 0 0 chr6 158506764 158506787 -23908455 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 780 155 0 0 chr6 158506789 158506905 -23908337 - FLAM_A SINE Alu -17 116 1 193 306 0 32 chr6 158507223 158507285 -23907957 - L2 LINE L2 -8 3305 3246 499 258 18 30 chr6 158507454 158507621 -23907621 - MIR SINE MIR -96 166 2 2260 173 12 83 chr6 158508317 158508735 -23906507 + MSTB2 LTR MaLR 1 447 -10 2436 88 3 0 chr6 158508735 158509040 -23906202 + AluSp SINE Alu 1 306 -7 2260 173 12 83 chr6 158509040 158509052 -23906190 + MSTB2 LTR MaLR 447 395 -62 2136 122 27 3 chr6 158509052 158509347 -23905895 + AluSx SINE Alu 1 302 -10 2260 173 12 83 chr6 158509347 158509407 -23905835 + MSTB2 LTR MaLR 394 457 0 363 96 0 0 chr6 158510254 158510306 -23904936 + (CA)n Simple_repeat Simple_repeat 2 53 0 896 134 6 0 chr6 158510651 158510808 -23904434 + (GGA)n Simple_repeat Simple_repeat 2 159 0 590 275 122 0 chr6 158511514 158511736 -23903506 + MIR SINE MIR 14 262 0 2685 55 0 0 chr6 158512014 158512325 -23902917 + AluY SINE Alu 1 311 0 4007 140 6 20 chr6 158513077 158513721 -23901521 + MER41B LTR ERV1 1 635 0 587 235 7 0 chr6 158514772 158514908 -23900334 + L1MC4 LINE L1 7165 7301 -741 269 103 59 0 chr6 158514908 158514976 -23900266 + (TA)n Simple_repeat Simple_repeat 2 73 0 601 208 26 39 chr6 158514979 158515133 -23900109 + L1MC4a LINE L1 7214 7353 -455 207 0 0 0 chr6 158515255 158515278 -23899964 + (T)n Simple_repeat Simple_repeat 1 23 0 452 228 46 131 chr6 158515305 158515351 -23899891 + L1MC4 LINE L1 7688 7736 -306 2180 110 3 10 chr6 158515351 158515659 -23899583 + AluSx SINE Alu 6 311 -1 452 228 46 131 chr6 158515659 158515849 -23899393 + L1MC4 LINE L1 7736 7904 -138 242 243 0 93 chr6 158515917 158516017 -23899225 + L1MC4a LINE L1 7711 7802 -6 1465 167 47 67 chr6 158516017 158516317 -23898925 - AluJb SINE Alu -18 294 1 2405 89 0 0 chr6 158518632 158518925 -23896317 - AluSc SINE Alu -16 293 1 336 272 0 19 chr6 158519555 158519658 -23895584 + L1MB2 LINE L1 6055 6155 -16 210 105 0 0 chr6 158519658 158519696 -23895546 + (T)n Simple_repeat Simple_repeat 1 38 0 717 217 68 6 chr6 158520689 158520850 -23894392 - FAM SINE Alu -4 171 1 1105 233 119 35 chr6 158521536 158521885 -23893357 - MLT1G LTR MaLR 0 590 157 1802 129 0 53 chr6 158521885 158522187 -23893055 - AluJb SINE Alu 0 312 27 1105 233 119 35 chr6 158522187 158522357 -23892885 - MLT1G LTR MaLR -433 157 3 700 224 0 24 chr6 158522581 158522751 -23892491 - L1MC5 LINE L1 -50 7911 7746 2042 117 0 57 chr6 158523024 158523340 -23891902 - AluSg SINE Alu -11 299 2 757 154 8 0 chr6 158523382 158523499 -23891743 - FLAM_C SINE Alu -25 118 1 2574 65 3 0 chr6 158524047 158524357 -23890885 + AluY SINE Alu 1 311 0 30 103 0 0 chr6 158524480 158524587 -23890655 + AT_rich Low_complexity Low_complexity 1 107 0 2002 121 40 0 chr6 158524729 158525026 -23890216 + AluSg SINE Alu 1 309 -1 21 36 0 0 chr6 158525092 158525120 -23890122 + AT_rich Low_complexity Low_complexity 1 28 0 2166 108 7 0 chr6 158526150 158526445 -23888797 + AluSp SINE Alu 4 300 -13 2150 109 10 0 chr6 158526924 158527217 -23888025 + AluSx SINE Alu 1 296 -16 431 196 41 10 chr6 158527605 158527702 -23887540 + MER5A DNA MER1_type 10 109 -80 2102 128 0 0 chr6 158527790 158528080 -23887162 + AluSx SINE Alu 1 290 -22 1611 194 26 10 chr6 158528649 158528953 -23886289 - AluJo SINE Alu -3 309 1 1104 109 46 46 chr6 158529009 158529183 -23886059 - AluJb SINE Alu -3 309 136 2174 110 10 10 chr6 158529774 158530075 -23885167 - AluSq SINE Alu -12 301 1 1829 129 3 50 chr6 158531267 158531569 -23883673 - AluSx SINE Alu -24 288 1 349 293 116 18 chr6 158531865 158532029 -23883213 + L3 LINE CR1 1047 1226 -351 2157 101 0 11 chr6 158532185 158532495 -23882747 - AluSq SINE Alu 0 307 1 613 159 71 0 chr6 158532566 158532679 -23882563 + AluSg/x SINE Alu 177 297 -15 302 145 32 0 chr6 158532679 158532741 -23882501 + G-rich Low_complexity Low_complexity 2 65 0 708 125 250 7 chr6 158533447 158533599 -23881643 - MER5A DNA MER1_type 0 189 1 658 213 6 58 chr6 158533752 158533897 -23881345 + FRAM SINE Alu 1 137 -165 1796 139 50 40 chr6 158533897 158534198 -23881044 + AluSx SINE Alu 1 304 -8 658 213 6 58 chr6 158534198 158534226 -23881016 + FRAM SINE Alu 137 165 -1 254 297 144 8 chr6 158534635 158534753 -23880489 - L2 LINE L2 -1 3271 3138 2462 57 0 0 chr6 158535185 158535493 -23879749 + AluSc SINE Alu 1 308 0 241 257 63 91 chr6 158536704 158536818 -23878424 + L1ME LINE L1 5532 5641 -480 2271 119 0 0 chr6 158536818 158537121 -23878121 + AluSx SINE Alu 1 303 -9 241 257 63 91 chr6 158537121 158537181 -23878061 + L1ME LINE L1 5641 5701 -420 1711 101 0 13 chr6 158537188 158537565 -23877677 - AluSx SINE Alu 0 432 59 4561 148 25 76 chr6 158738811 158739687 -23675555 - L1MB8 LINE L1 0 6178 5259 2469 50 0 10 chr6 158739687 158739987 -23675255 - AluY SINE Alu -14 297 1 4561 148 25 76 chr6 158739987 158740006 -23675236 - L1MB8 LINE L1 -919 5259 5241 2046 102 0 4 chr6 158740006 158740281 -23674961 - L1PB1 LINE L1 -4 6147 5874 4561 148 25 76 chr6 158740281 158740389 -23674853 - L1MB8 LINE L1 -937 5241 5221 1211 72 24 18 chr6 158741169 158741335 -23673907 + THE1C LTR MaLR 1 167 -208 27 29 0 0 chr6 158741411 158741445 -23673797 + AT_rich Low_complexity Low_complexity 1 34 0 3187 34 3 0 chr6 158741554 158741911 -23673331 - L1PA5 LINE L1 -6 6148 5791 1468 106 10 0 chr6 158741911 158742119 -23673123 + THE1C LTR MaLR 166 375 0 798 189 0 0 chr6 158742725 158742852 -23672390 - FRAM SINE Alu -48 128 2 211 200 0 0 chr6 158743478 158743523 -23671719 - L2 LINE L2 -1 3312 3268 316 342 40 13 chr6 158743540 158743689 -23671553 + MIR SINE MIR 20 172 -90 239 238 16 16 chr6 158744737 158744800 -23670442 + MIR3 SINE MIR 98 160 -48 2404 57 0 7 chr6 158744949 158745248 -23669994 + AluY SINE Alu 15 311 0 2465 67 0 0 chr6 158745265 158745563 -23669679 + AluY SINE Alu 8 305 -6 265 301 124 10 chr6 158746062 158746255 -23668987 - L3 LINE CR1 -159 1418 1204 336 24 0 0 chr6 158746397 158746438 -23668804 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 337 265 49 10 chr6 158746495 158746597 -23668645 + L1M LINE L1 5288 5393 -771 6412 149 31 7 chr6 158748230 158750184 -23665058 - L1PB4 LINE L1 0 6156 4149 2668 188 125 40 chr6 158750184 158750887 -23664355 - MER11C LTR ERVK 0 1071 309 1833 164 3 0 chr6 158750889 158751207 -23664035 - L1 LINE L1 -1227 4919 4601 2622 63 42 0 chr6 158751207 158751538 -23663704 - MER11B LTR ERVK -891 345 1 1586 154 4 0 chr6 158751538 158751811 -23663431 - L1PB4 LINE L1 -1992 4154 3881 205 177 65 0 chr6 158752027 158752089 -23663153 + (CTCA)n Simple_repeat Simple_repeat 3 68 0 204 320 0 0 chr6 158752148 158752198 -23663044 - L2 LINE L2 -1 3312 3263 409 248 270 0 chr6 158752386 158752523 -23662719 - MER5B DNA MER1_type -4 174 1 543 255 168 0 chr6 158752664 158752813 -23662429 - MER5A DNA MER1_type -7 182 9 251 154 103 13 chr6 158753376 158753454 -23661788 - L1ME4a LINE L1 -9 6112 6028 569 287 112 32 chr6 158753476 158754071 -23661171 - L1ME4a LINE L1 -224 5897 5255 376 320 25 8 chr6 158755110 158755232 -23660010 + MIR3 SINE MIR 3 126 -82 318 26 0 0 chr6 158755435 158755474 -23659768 + (TG)n Simple_repeat Simple_repeat 2 40 0 375 264 111 43 chr6 158755913 158756148 -23659094 - L2 LINE L2 -180 3092 2842 2116 119 3 3 chr6 158758118 158758413 -23656829 - AluSx SINE Alu -17 295 1 2282 107 0 3 chr6 158758868 158759166 -23656076 + AluSq SINE Alu 1 297 -16 425 211 224 41 chr6 158759502 158759748 -23655494 + Charlie2 DNA MER1_type 40 330 -2532 * 1468 230 200 12 chr6 158759738 158759961 -23655281 + Charlie2 DNA MER1_type 1855 2035 -827 186 71 0 0 chr6 158759961 158759989 -23655253 + (TA)n Simple_repeat Simple_repeat 1 28 0 1468 230 200 12 chr6 158759989 158760356 -23654886 + Charlie2 DNA MER1_type 2035 2556 -306 2232 101 3 10 chr6 158760427 158760725 -23654517 + AluSx SINE Alu 1 296 -16 238 309 0 0 chr6 158760905 158760973 -23654269 - MER69 DNA AcHobo -11 2515 2448 764 275 59 13 chr6 158760985 158761221 -23654021 - MER69 DNA AcHobo -2279 247 1 2200 95 0 33 chr6 158761317 158761622 -23653620 - AluSx SINE Alu -17 295 1 2008 162 6 17 chr6 158763134 158763239 -23652003 + MER7A DNA MER2_type 2 107 -2931 2133 108 0 30 chr6 158763239 158763544 -23651698 - AluSx SINE Alu -16 296 1 2008 162 6 17 chr6 158763544 158763784 -23651458 + MER7A DNA MER2_type 107 341 -5 413 284 37 8 chr6 158765415 158765549 -23649693 - MER103 DNA DNA -7 159 22 265 236 0 0 chr6 158765764 158765819 -23649423 - L1MC4 LINE L1 -1340 6702 6648 14756 122 29 48 chr6 158765842 158765966 -23649276 + Tigger1 DNA MER2_type 1 126 -2292 3455 87 2 9 chr6 158765966 158766424 -23648818 - L1PA13 LINE L1 0 6163 5709 14756 122 29 48 chr6 158766424 158768146 -23647096 + Tigger1 DNA MER2_type 126 1791 -627 2418 74 0 7 chr6 158768146 158768444 -23646798 - AluSx SINE Alu -16 296 1 14756 122 29 48 chr6 158768444 158769050 -23646192 + Tigger1 DNA MER2_type 1791 2407 -11 245 276 179 8 chr6 158769566 158769689 -23645553 - MIR3 SINE MIR -48 160 17 899 280 76 17 chr6 158769697 158770157 -23645085 + MER113 DNA MER1_type? 6 492 -29 300 192 0 0 chr6 158770366 158770418 -23644824 + L2 LINE L2 3217 3268 -4 1825 135 31 0 chr6 158770619 158770908 -23644334 + AluSx SINE Alu 1 298 -14 470 303 43 19 chr6 158771007 158771169 -23644073 + MIR SINE MIR 47 212 -50 6558 93 31 1 chr6 158771908 158773516 -23641726 - L1PA11 LINE L1 -1 6173 4519 2415 141 6 3 chr6 158773665 158774019 -23641223 - THE1A LTR MaLR 0 355 1 489 165 44 0 chr6 158774948 158775039 -23640203 + MER5A DNA MER1_type 7 101 -88 186 43 0 0 chr6 158775118 158775141 -23640101 + (TC)n Simple_repeat Simple_repeat 2 24 0 279 0 0 0 chr6 158775145 158775176 -23640066 + (CA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr6 158775181 158775204 -23640038 + AT_rich Low_complexity Low_complexity 1 23 0 1276 152 24 149 chr6 158775254 158775590 -23639652 - AluYb8 SINE Alu -24 294 1 265 296 102 9 chr6 158775957 158776065 -23639177 + L2 LINE L2 3185 3302 -11 975 241 33 21 chr6 158776298 158776616 -23638626 + LTR16A LTR ERVL 62 382 -75 995 172 141 0 chr6 158776787 158776979 -23638263 + MER20 DNA MER1_type 1 219 0 474 295 56 30 chr6 158778553 158778821 -23636421 + L1ME4a LINE L1 5611 5885 -236 303 208 117 25 chr6 158778860 158778980 -23636262 + L1ME4a LINE L1 5991 6121 0 420 235 42 0 chr6 158779010 158779129 -23636113 - L1ME3A LINE L1 -26 6144 6021 319 139 0 0 chr6 158779191 158779234 -23636008 - Tigger3(Golem) DNA MER2_type -1 3028 2986 1007 189 17 0 chr6 158779235 158779410 -23635832 - Tigger3(Golem) DNA MER2_type -2816 213 36 1432 229 60 16 chr6 158779416 158779782 -23635460 - L1ME3A LINE L1 -248 5922 5541 2208 87 4 0 chr6 158782063 158782340 -23632902 + AluSg SINE Alu 27 304 -6 2029 124 34 0 chr6 158782487 158782785 -23632457 - AluSx SINE Alu -4 308 1 1034 174 0 0 chr6 158782822 158783015 -23632227 + FRAM SINE Alu 1 192 0 451 281 97 86 chr6 158783157 158783601 -23631641 - L2 LINE L2 0 3272 2824 2155 106 0 0 chr6 158784544 158784862 -23630380 - AluSx SINE Alu 0 318 1 213 132 0 0 chr6 158785597 158785635 -23629607 + (TC)n Simple_repeat Simple_repeat 2 39 0 269 309 81 7 chr6 158785872 158786021 -23629221 + MIR SINE MIR 85 244 -18 180 0 0 0 chr6 158786467 158786487 -23628755 + (T)n Simple_repeat Simple_repeat 1 20 0 637 286 30 92 chr6 158786843 158787213 -23628029 - L1MEd LINE L1 -5340 1591 1245 489 283 94 0 chr6 158787335 158787547 -23627695 - L1MEd LINE L1 -5855 1076 845 298 362 27 10 chr6 158787566 158787709 -23627533 + MIR SINE MIR 16 150 -58 440 233 25 8 chr6 158787771 158787891 -23627351 + LTR16A1 LTR ERVL 1 122 -335 315 133 0 0 chr6 158787896 158787941 -23627301 + LTR16A1 LTR ERVL 413 457 0 609 261 224 44 chr6 158789111 158789776 -23625466 + L2 LINE L2 2491 3272 0 201 94 0 0 chr6 158790501 158790533 -23624709 + (TA)n Simple_repeat Simple_repeat 1 32 0 2022 102 24 24 chr6 158792036 158792331 -23622911 - AluSx SINE Alu -17 295 1 1259 203 30 52 chr6 158792390 158792720 -23622522 - MSTD LTR MaLR -73 323 1 213 277 215 0 chr6 158793057 158793167 -23622075 + MIR SINE MIR 19 153 -78 2260 157 19 26 chr6 158794352 158794729 -23620513 + MLT1A2 LTR MaLR 1 374 0 1389 231 58 40 chr6 158794832 158795277 -23619965 - L1MEd LINE L1 -5955 468 16 321 227 13 0 chr6 158795273 158795348 -23619894 - L1MC4a LINE L1 -1088 6720 6645 * 191 286 0 0 chr6 158795429 158795478 -23619764 - L3 LINE CR1 -6 1571 1523 954 242 128 57 chr6 158796764 158797183 -23618059 - MLT1H LTR MaLR -13 536 19 399 254 113 0 chr6 158797197 158797339 -23617903 - MLT1H1 LTR MaLR -2 553 396 692 301 56 34 chr6 158797354 158797620 -23617622 - MLT1H1 LTR MaLR -277 278 7 2080 200 99 48 chr6 158798074 158798589 -23616653 - MLT1F LTR MaLR -1 541 1 2392 88 0 0 chr6 158799078 158799372 -23615870 - AluSg SINE Alu -16 294 1 748 261 129 26 chr6 158800682 158800992 -23614250 + L1MC4a LINE L1 5707 6048 -1760 234 197 82 0 chr6 158801201 158801262 -23613980 + L2 LINE L2 3248 3313 0 282 309 51 46 chr6 158802646 158802821 -23612421 - MER5A DNA MER1_type -7 182 7 512 250 0 0 chr6 158802923 158803031 -23612211 + MER58A DNA MER1_type 3 110 0 * 2919 106 33 26 chr6 158803023 158803611 -23611631 - MER4E LTR ERV1 0 766 1 733 115 90 16 chr6 158803611 158803727 -23611515 + MER58A DNA MER1_type 100 224 0 4627 217 77 78 chr6 158805870 158806261 -23608981 - L1MD3 LINE L1 -2 8039 7649 2495 63 0 10 chr6 158806261 158806561 -23608681 + AluY SINE Alu 1 297 -14 4627 217 77 78 chr6 158806561 158806648 -23608594 - L1MD3 LINE L1 -392 7649 7563 2393 92 0 9 chr6 158806648 158806963 -23608279 - AluSx SINE Alu 0 312 1 4627 217 77 78 chr6 158806963 158808079 -23607163 - L1MD3 LINE L1 -478 7563 6458 28 48 0 0 chr6 158808559 158808601 -23606641 + AT_rich Low_complexity Low_complexity 1 42 0 3511 8 0 0 chr6 158810372 158810760 -23604482 - L1HS LINE L1 0 6155 5768 2062 122 3 7 chr6 158811809 158812104 -23603138 - AluSx SINE Alu -16 296 3 1857 132 227 62 chr6 158812332 158812764 -23602478 - MLT1D LTR MaLR 0 505 3 2010 136 24 0 chr6 158813035 158813329 -23601913 + AluSx SINE Alu 1 301 -11 279 0 0 0 chr6 158813925 158813956 -23601286 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 643 216 210 6 chr6 158814210 158814377 -23600865 + MIR SINE MIR 18 218 -44 185 239 22 0 chr6 158814442 158814488 -23600754 - L2 LINE L2 -4 3268 3222 468 0 0 0 chr6 158814835 158814887 -23600355 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 217 295 95 0 chr6 158815200 158815305 -23599937 + L2 LINE L2 2513 2627 -687 285 232 0 0 chr6 158816233 158816289 -23598953 - MIR3 SINE MIR -2 206 151 1711 140 68 10 chr6 158816362 158816669 -23598573 + L1MB3 LINE L1 5855 6179 -4 188 146 0 42 chr6 158816715 158816763 -23598479 + (GAAAA)n Simple_repeat Simple_repeat 1 46 0 393 292 85 8 chr6 158816943 158817073 -23598169 - MIR3 SINE MIR -53 155 16 418 296 0 8 chr6 158817204 158817336 -23597906 - MIR SINE MIR -5 257 127 957 179 17 12 chr6 158817336 158817509 -23597733 + FRAM SINE Alu 1 167 -9 255 212 94 71 chr6 158817511 158817596 -23597646 - MIR SINE MIR -128 134 48 1765 128 20 0 chr6 158817697 158817948 -23597294 - AluSx SINE Alu -19 293 38 1729 183 3 0 chr6 158818900 158819201 -23596041 + AluJb SINE Alu 1 302 -10 1818 174 20 0 chr6 158820147 158820452 -23594790 + AluJb SINE Alu 1 311 -1 281 309 53 0 chr6 158820452 158820546 -23594696 - L2 LINE L2 -18 3254 3156 1329 201 85 22 chr6 158820761 158821080 -23594162 - MER2 DNA MER2_type -6 339 1 317 232 104 48 chr6 158822179 158822304 -23592938 + MIR3 SINE MIR 56 187 -21 1090 252 83 48 chr6 158823287 158823382 -23591860 - L2 LINE L2 -4 3309 3219 1743 157 71 24 chr6 158823382 158823676 -23591566 - AluJb SINE Alu -4 308 1 1090 252 83 48 chr6 158823676 158824064 -23591178 - L2 LINE L2 -94 3219 2809 322 200 57 0 chr6 158824160 158824230 -23591012 - MER5A DNA MER1_type -86 103 30 760 152 0 76 chr6 158824308 158824440 -23590802 + FLAM_C SINE Alu 2 123 -20 215 221 125 73 chr6 158824445 158824581 -23590661 - L2 LINE L2 -609 2705 2563 189 315 37 0 chr6 158824744 158824798 -23590444 - MER5A DNA MER1_type -6 183 128 1637 166 225 19 chr6 158824800 158825222 -23590020 + LTR54 LTR ERV1 2 510 0 314 200 84 84 chr6 158825222 158825294 -23589948 - MER5A DNA MER1_type -86 103 32 329 301 16 124 chr6 158825294 158825487 -23589755 + MER5B DNA MER1_type 4 175 -3 301 313 121 17 chr6 158825515 158825662 -23589580 - MIR SINE MIR -92 116 3 320 261 58 29 chr6 158825717 158825855 -23589387 - LTR33A LTR ERVL 0 523 382 1137 173 4 148 chr6 158826195 158826473 -23588769 + MER8 DNA MER2_type 1 238 -1 1995 145 0 3 chr6 158827517 158827820 -23587422 + AluSx SINE Alu 1 302 -10 323 218 27 44 chr6 158829262 158829364 -23585878 - MIR SINE MIR -57 151 48 222 356 35 11 chr6 158829525 158829612 -23585630 + L2 LINE L2 3180 3268 -4 667 290 60 0 chr6 158829877 158830077 -23585165 - MIR SINE MIR -3 259 48 613 220 47 13 chr6 158830108 158830258 -23584984 - L1ME2 LINE L1 -9 6155 6001 27 49 0 0 chr6 158830292 158830333 -23584909 + AT_rich Low_complexity Low_complexity 1 41 0 3365 149 74 30 chr6 158830354 158831013 -23584229 - L1PA16 LINE L1 0 6166 5479 2034 178 17 75 chr6 158830996 158831475 -23583767 - L1ME2 LINE L1 -220 5944 5494 * 7331 22 0 0 chr6 158831510 158832329 -23582913 + L1PA3 LINE L1 5361 6179 0 242 356 44 0 chr6 158832336 158832426 -23582816 + L2 LINE L2 3141 3234 -38 1025 221 50 69 chr6 158832806 158833123 -23582119 - MLT1E LTR MaLR 0 593 283 1002 133 20 0 chr6 158833126 158833277 -23581965 - MER73 LTR ERVL 0 644 491 289 180 0 33 chr6 158833274 158833335 -23581907 - MLT1E LTR MaLR -527 66 8 * 2444 81 0 0 chr6 158834085 158834380 -23580862 + AluSc SINE Alu 1 295 -14 2280 235 35 4 chr6 158834443 158834958 -23580284 - MLT2B3 LTR ERVL -19 535 5 2339 107 67 14 chr6 158835191 158835547 -23579695 - THE1C LTR MaLR 0 375 1 196 233 0 0 chr6 158835662 158835705 -23579537 - MIR SINE MIR -24 238 196 498 196 36 0 chr6 158835738 158835850 -23579392 + LTR37B LTR ERV1 349 464 -4 603 289 30 0 chr6 158835853 158836019 -23579223 - MIR SINE MIR -88 174 4 217 254 18 0 chr6 158836953 158837008 -23578234 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 561 314 114 49 chr6 158838333 158838639 -23576603 + L2 LINE L2 2945 3270 -2 6411 77 18 14 chr6 158838650 158839532 -23575710 - L1PA10 LINE L1 -1 6167 5282 2228 110 36 33 chr6 158840573 158840936 -23574306 - THE1B LTR MaLR 0 364 1 2193 104 0 4 chr6 158841706 158842012 -23573230 - AluSg SINE Alu 0 305 1 266 118 97 11 chr6 158842642 158842735 -23572507 + (TA)n Simple_repeat Simple_repeat 2 102 0 195 308 158 8 chr6 158843239 158843371 -23571871 - MIR3 SINE MIR -39 169 10 665 99 0 0 chr6 158843386 158843477 -23571765 + AluSg/x SINE Alu 210 300 -12 1451 162 66 94 chr6 158843767 158844193 -23571049 - MLT2A2 LTR ERVL -2 451 38 42212 62 4 2 chr6 158844194 158850323 -23564919 - L1PA5 LINE L1 0 6154 11 384 93 0 0 chr6 158850329 158850383 -23564859 - MLT2A2 LTR ERVL -398 55 2 450 0 0 0 chr6 158851360 158851410 -23563832 + (TG)n Simple_repeat Simple_repeat 1 50 0 285 221 0 0 chr6 158851690 158851758 -23563484 + (TA)n Simple_repeat Simple_repeat 2 69 0 199 330 125 50 chr6 158852066 158852266 -23562976 + MIR SINE MIR 26 240 -22 387 0 0 0 chr6 158852981 158853024 -23562218 + (CA)n Simple_repeat Simple_repeat 2 44 0 1957 115 107 30 chr6 158853176 158853514 -23561728 + THE1B LTR MaLR 1 364 0 215 299 35 11 chr6 158853608 158853695 -23561547 - L3 LINE CR1 -4 1573 1485 245 296 71 0 chr6 158854671 158854769 -23560473 - MIR SINE MIR -88 174 70 342 0 0 0 chr6 158855800 158855838 -23559404 + (CA)n Simple_repeat Simple_repeat 1 38 0 831 221 67 69 chr6 158856639 158857054 -23558188 + MLT1A2 LTR MaLR 1 395 -1 224 258 48 0 chr6 158857054 158857116 -23558126 + L2 LINE L2 3201 3265 -7 326 285 77 57 chr6 158857313 158857559 -23557683 - MARNA DNA Mariner -98 488 238 243 335 26 26 chr6 158857578 158857733 -23557509 + MIR3 SINE MIR 36 190 -18 2106 193 92 15 chr6 158858265 158858732 -23556510 - MLT1D LTR MaLR -2 503 1 244 287 160 5 chr6 158859313 158859501 -23555741 + MIR SINE MIR 14 230 -32 26 30 0 0 chr6 158861097 158861130 -23554112 + AT_rich Low_complexity Low_complexity 1 33 0 2239 107 0 3 chr6 158861217 158861515 -23553727 + AluSx SINE Alu 1 297 -15 236 250 12 50 chr6 158861563 158861643 -23553599 - MIR SINE MIR -3 259 183 26 23 0 23 chr6 158861652 158861681 -23553561 + AT_rich Low_complexity Low_complexity 1 30 -13 2334 117 87 22 chr6 158861681 158862083 -23553159 - MSTA LTR MaLR 0 428 1 26 23 0 23 chr6 158862083 158862097 -23553145 + AT_rich Low_complexity Low_complexity 30 43 0 370 357 8 8 chr6 158862111 158862237 -23553005 - MIR SINE MIR -110 152 27 206 295 0 38 chr6 158864238 158864421 -23550821 + (TG)n Simple_repeat Simple_repeat 1 176 0 542 254 36 12 chr6 158865141 158865306 -23549936 + MER5B DNA MER1_type 1 169 -9 228 274 21 74 chr6 158865392 158865487 -23549755 - MIR SINE MIR -10 252 163 2056 151 0 22 chr6 158865634 158865953 -23549289 - AluSx SINE Alu 0 312 1 2388 98 0 0 chr6 158866446 158866743 -23548499 + AluY SINE Alu 1 297 -14 2485 88 0 0 chr6 158867902 158868207 -23547035 + AluSq SINE Alu 1 305 -8 224 242 65 0 chr6 158868259 158868321 -23546921 + GA-rich Low_complexity Low_complexity 2 67 0 215 197 183 0 chr6 158868469 158868540 -23546702 + MIR SINE MIR 175 258 -4 266 282 24 0 chr6 158869009 158869094 -23546148 - L2 LINE L2 -975 2339 2253 423 342 21 5 chr6 158869237 158869424 -23545818 - MIR SINE MIR -1 261 72 2466 76 0 3 chr6 158869548 158869849 -23545393 + AluSx SINE Alu 1 300 -12 587 264 250 34 chr6 158869956 158870820 -23544422 - L2 LINE L2 -1 3312 2253 450 297 66 11 chr6 158871894 158872076 -23543166 + MIR SINE MIR 65 256 -6 449 204 261 7 chr6 158872243 158872385 -23542857 + MER5A DNA MER1_type 12 189 0 2369 115 102 8 chr6 158873709 158874100 -23541142 - MSTA LTR MaLR 0 428 1 567 330 39 4 chr6 158874135 158874368 -23540874 + MIR SINE MIR 22 262 0 187 298 35 0 chr6 158874702 158874759 -23540483 - MIR3 SINE MIR -138 70 12 1065 167 16 0 chr6 158874759 158874945 -23540297 - MER5A DNA MER1_type 0 189 1 605 296 31 27 chr6 158877128 158877351 -23537891 - MIR SINE MIR -26 236 13 416 114 29 14 chr6 158877463 158877533 -23537709 - Looper DNA T2_type 0 1558 1488 3179 207 10 15 chr6 158877535 158878216 -23537026 - Looper DNA T2_type -503 1055 378 987 207 20 0 chr6 158878219 158878417 -23536825 - MER3 DNA MER1_type -3 206 5 1829 158 10 43 chr6 158878421 158878819 -23536423 - Looper DNA T2_type -1173 385 1 22 0 0 0 chr6 158878859 158878881 -23536361 + AT_rich Low_complexity Low_complexity 1 22 0 186 162 103 59 chr6 158878995 158879063 -23536179 + MIR SINE MIR 183 253 -9 294 273 86 43 chr6 158879275 158879414 -23535828 - L2 LINE L2 -3 3269 3125 871 173 0 26 chr6 158879575 158879731 -23535511 + FRAM SINE Alu 3 154 -22 1835 203 50 31 chr6 158879931 158880389 -23534853 + MLT1C LTR MaLR 1 467 0 2583 67 0 0 chr6 158880516 158880816 -23534426 - AluSc SINE Alu -8 301 2 2044 148 45 28 chr6 158881219 158881577 -23533665 + THE1B LTR MaLR 1 364 0 522 295 78 9 chr6 158882507 158882724 -23532518 + MIR SINE MIR 16 247 -15 2089 118 0 60 chr6 158882850 158883181 -23532061 - AluSx SINE Alu -1 311 1 1972 154 3 7 chr6 158883186 158883492 -23531750 - AluJo SINE Alu -7 305 1 23 0 0 0 chr6 158883967 158883990 -23531252 + AT_rich Low_complexity Low_complexity 1 23 0 2729 46 0 0 chr6 158884794 158885100 -23530142 - AluYa5 SINE Alu -5 306 1 247 273 50 31 chr6 158885141 158885302 -23529940 - L1ME4a LINE L1 -3 6118 5955 1209 258 88 38 chr6 158885448 158886002 -23529240 - HAL1 LINE L1 -124 2383 1802 2360 116 42 14 chr6 158886006 158886359 -23528883 + THE1B LTR MaLR 2 364 0 2728 148 59 4 chr6 158886391 158886864 -23528378 - MLT1D LTR MaLR 0 505 7 625 223 46 0 chr6 158886872 158887002 -23528240 - HAL1 LINE L1 -801 1706 1571 374 232 201 76 chr6 158887004 158887257 -23527985 - MLT1J1 LTR MaLR -2 444 139 2422 89 0 3 chr6 158887257 158887560 -23527682 - AluSq SINE Alu -11 302 1 374 232 201 76 chr6 158887560 158887634 -23527608 - MLT1J1 LTR MaLR -307 139 76 416 228 162 12 chr6 158887681 158887848 -23527394 - HAL1 LINE L1 -932 1575 1384 1792 162 0 31 chr6 158887947 158888237 -23527005 - AluJo SINE Alu -31 281 1 642 216 0 8 chr6 158888243 158888377 -23526865 - AluJb SINE Alu -176 136 4 611 239 15 45 chr6 158888377 158888641 -23526601 - HAL1 LINE L1 -1230 1277 1022 228 279 154 10 chr6 158888939 158889043 -23526199 + L2 LINE L2 3195 3313 0 21 0 0 0 chr6 158889159 158889180 -23526062 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 158890134 158890167 -23525075 + AT_rich Low_complexity Low_complexity 1 33 0 1987 126 31 7 chr6 158890234 158890520 -23524722 - AluSx SINE Alu -19 293 1 244 287 59 86 chr6 158890630 158890852 -23524390 + MIR3 SINE MIR 3 212 -15 300 140 0 0 chr6 158892275 158892325 -23522917 - MADE1 DNA Mariner 0 80 31 471 214 138 7 chr6 158892377 158892522 -23522720 + MIR SINE MIR 63 226 -36 26 30 0 0 chr6 158892745 158892778 -23522464 + AT_rich Low_complexity Low_complexity 1 33 0 1833 92 8 0 chr6 158893605 158893843 -23521399 - AluSg/x SINE Alu -4 308 69 24 32 0 0 chr6 158894323 158894354 -23520888 + AT_rich Low_complexity Low_complexity 1 31 0 2317 81 3 0 chr6 158895837 158896122 -23519120 - AluSp SINE Alu -7 306 21 2133 136 0 0 chr6 158897617 158897919 -23517323 + AluSx SINE Alu 1 302 -10 367 203 27 0 chr6 158898653 158898727 -23516515 - MER5A DNA MER1_type -88 101 26 225 0 0 0 chr6 158899126 158899151 -23516091 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr6 158899507 158899528 -23515714 + AT_rich Low_complexity Low_complexity 1 21 0 894 143 34 7 chr6 158899617 158899764 -23515478 + MLT1A1 LTR MaLR 1 151 -214 329 157 0 0 chr6 158899769 158899820 -23515422 + MLT1A1 LTR MaLR 257 307 -58 1146 164 61 41 chr6 158900034 158900488 -23514754 - MER1B DNA MER1_type 0 339 1 2029 142 68 6 chr6 158900564 158900901 -23514341 - MLT1A1 LTR MaLR -7 358 1 601 256 113 34 chr6 158900901 158901167 -23514075 - MLT1J LTR MaLR -12 499 213 718 265 90 0 chr6 158901826 158902026 -23513216 - MIR SINE MIR 0 262 45 330 257 120 60 chr6 158902888 158903071 -23512171 + L2 LINE L2 3075 3268 -4 202 333 86 43 chr6 158903157 158903319 -23511923 + MER5A DNA MER1_type 6 174 -15 252 0 0 0 chr6 158905122 158905150 -23510092 + (TG)n Simple_repeat Simple_repeat 2 29 0 687 239 157 12 chr6 158905626 158905927 -23509315 - MER57A LTR ERV1 0 403 99 1514 192 7 4 chr6 158906224 158906500 -23508742 - AluJb SINE Alu -3 309 33 2013 141 24 37 chr6 158907802 158908178 -23507064 - L1MB7 LINE L1 -30 6154 5784 1950 110 59 7 chr6 158908187 158908477 -23506765 - AluY SINE Alu -6 305 1 1986 126 0 20 chr6 158908497 158908790 -23506452 - AluSx SINE Alu -12 300 14 2030 185 49 5 chr6 158908850 158909258 -23505984 - L1P1 LINE L1 -350 5805 5377 739 65 0 21 chr6 158909331 158909424 -23505818 + AluY SINE Alu 2 92 -219 239 279 67 39 chr6 158909424 158909528 -23505714 - MER91A DNA MER1_type -81 115 9 270 317 30 69 chr6 158909544 158909776 -23505466 + MIR SINE MIR 34 257 -5 375 176 148 37 chr6 158909830 158909938 -23505304 + MER58 DNA MER1_type 4 123 -2297 281 263 82 122 chr6 158912066 158912336 -23502906 - MLT1L LTR MaLR -13 602 238 262 299 78 32 chr6 158912447 158912601 -23502641 - MLT1J LTR MaLR -350 161 1 225 180 0 0 chr6 158912848 158912898 -23502344 + GA-rich Low_complexity Low_complexity 2 51 0 300 341 14 29 chr6 158913205 158913343 -23501899 + MIR SINE MIR 75 210 -52 28 48 0 0 chr6 158914147 158914189 -23501053 + AT_rich Low_complexity Low_complexity 1 42 0 856 256 144 74 chr6 158914858 158915429 -23499813 + MLT1L LTR MaLR 5 615 0 208 303 13 13 chr6 158915781 158915857 -23499385 + L2 LINE L2 3009 3084 -188 667 222 7 21 chr6 158915991 158916135 -23499107 - L2 LINE L2 0 3313 3172 225 344 0 0 chr6 158916151 158916212 -23499030 + L2 LINE L2 3245 3305 -8 279 292 117 53 chr6 158916234 158916405 -23498837 - MLT1H LTR MaLR -245 304 123 1851 176 0 0 chr6 158917803 158918098 -23497144 + AluSx SINE Alu 1 295 -17 376 312 19 64 chr6 158918636 158918793 -23496449 - MIR3 SINE MIR -29 179 30 277 270 0 16 chr6 158919816 158919879 -23495363 - MIR3 SINE MIR -51 157 96 378 294 66 29 chr6 158920462 158920598 -23494644 - MER5B DNA MER1_type -35 143 3 282 242 112 17 chr6 158921785 158921918 -23493324 + MIR SINE MIR 34 172 -67 243 0 0 0 chr6 158922278 158922305 -23492937 + (T)n Simple_repeat Simple_repeat 1 27 0 1942 154 6 6 chr6 158922386 158922698 -23492544 - AluSx SINE Alu 0 312 1 23 78 0 0 chr6 158924459 158924510 -23490732 + AT_rich Low_complexity Low_complexity 1 51 0 5382 174 47 24 chr6 158924580 158925908 -23489334 + L1M4 LINE L1 4141 5494 -684 1427 127 13 44 chr6 158925908 158926136 -23489106 + AluJb SINE Alu 1 221 -91 1830 100 35 23 chr6 158927383 158927690 -23487552 + AluSc SINE Alu 16 325 0 27 62 0 0 chr6 158928203 158928251 -23486991 + AT_rich Low_complexity Low_complexity 1 48 0 369 315 122 39 chr6 158928522 158928776 -23486466 + L3b LINE CR1 1303 1577 -6 25 0 0 0 chr6 158929145 158929170 -23486072 + AT_rich Low_complexity Low_complexity 1 25 0 411 21 0 0 chr6 158929593 158929641 -23485601 + (CA)n Simple_repeat Simple_repeat 1 48 0 187 326 98 30 chr6 158930313 158930445 -23484797 - MIR SINE MIR -100 162 22 273 341 90 24 chr6 158930451 158930618 -23484624 - MER5B DNA MER1_type 0 178 1 260 252 50 79 chr6 158930699 158930838 -23484404 - MER103 DNA DNA -6 160 26 2416 80 3 0 chr6 158931323 158931623 -23483619 + AluSx SINE Alu 1 301 -11 2637 58 0 10 chr6 158931623 158931936 -23483306 + AluY SINE Alu 1 310 -1 1047 39 78 8 chr6 158932278 158932407 -23482835 + MER85 DNA T2_type 2 139 0 193 400 18 48 chr6 158932417 158932582 -23482660 + MER5B DNA MER1_type 2 161 -17 210 105 26 0 chr6 158932608 158932646 -23482596 - L3 LINE CR1 -182 1395 1357 346 296 69 16 chr6 158933959 158934093 -23481149 + MIR SINE MIR 21 154 -62 2301 84 0 0 chr6 158934102 158934432 -23480810 + AluSx SINE Alu 1 330 0 260 100 100 0 chr6 158934452 158934529 -23480713 + Alu SINE Alu 241 321 0 234 222 19 0 chr6 158934530 158934584 -23480658 + MIR SINE MIR 156 210 -52 196 323 194 32 chr6 158934795 158934919 -23480323 - L2 LINE L2 -5 3267 3124 351 332 126 54 chr6 158934985 158935214 -23480028 + L2 LINE L2 2342 2553 -719 1069 144 27 27 chr6 158935214 158935401 -23479841 - MER5A DNA MER1_type 0 189 3 351 332 126 54 chr6 158935401 158936042 -23479200 + L2 LINE L2 2553 3267 -5 191 322 81 40 chr6 158936050 158936224 -23479018 - L2 LINE L2 -219 3053 2873 317 221 13 39 chr6 158937645 158937722 -23477520 - L2 LINE L2 -1 3312 3238 2365 41 41 7 chr6 158938594 158938885 -23476357 + AluY SINE Alu 1 301 -10 1975 180 42 0 chr6 158939484 158939818 -23475424 + MER7A DNA MER2_type 1 346 0 252 266 26 104 chr6 158941128 158941299 -23473943 + MIR SINE MIR 18 180 -62 2428 110 38 9 chr6 158941334 158941679 -23473563 - THE1A LTR MaLR 0 355 1 2044 106 36 4 chr6 158942546 158942821 -23472421 - AluSx SINE Alu -22 290 7 2365 89 0 0 chr6 158945100 158945392 -23469850 + AluSq SINE Alu 1 292 -21 901 209 60 0 chr6 158945622 158945823 -23469419 + L1MB3 LINE L1 5964 6176 -7 190 368 0 0 chr6 158946251 158946327 -23468915 + L3b LINE CR1 1125 1200 -383 236 258 177 0 chr6 158946690 158946814 -23468428 + L3b LINE CR1 1319 1464 -119 232 276 0 0 chr6 158948061 158948119 -23467123 - L2 LINE L2 0 3313 3256 530 294 147 9 chr6 158948772 158948990 -23466252 + MIR SINE MIR 15 262 0 252 321 46 53 chr6 158949082 158949213 -23466029 - L2 LINE L2 -7 3265 3136 181 315 31 39 chr6 158950070 158950200 -23465042 - MIR3 SINE MIR -68 140 12 189 269 19 0 chr6 158950785 158950837 -23464405 - MIR SINE MIR -132 130 78 189 0 0 0 chr6 158950912 158950933 -23464309 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 189 0 0 0 chr6 158950970 158950991 -23464251 + (T)n Simple_repeat Simple_repeat 1 21 0 2213 108 0 0 chr6 158951035 158951323 -23463919 + AluSx SINE Alu 1 288 -24 32 0 0 0 chr6 158951323 158951355 -23463887 + AT_rich Low_complexity Low_complexity 1 32 0 2194 114 0 3 chr6 158951832 158952131 -23463111 - AluSx SINE Alu -14 298 1 252 217 108 70 chr6 158954519 158954648 -23460594 + MIR SINE MIR 59 192 -70 1289 214 29 11 chr6 158955855 158956136 -23459106 - MLT1E2 LTR MaLR -340 286 1 437 301 22 7 chr6 158956370 158956506 -23458736 - L2 LINE L2 -1 3271 3134 266 278 123 82 chr6 158956683 158957050 -23458192 - L2 LINE L2 -337 2977 2596 751 179 75 46 chr6 158957864 158958037 -23457205 - MER5B DNA MER1_type 0 178 1 23 0 0 0 chr6 158959403 158959426 -23455816 + AT_rich Low_complexity Low_complexity 1 23 0 234 108 27 0 chr6 158959827 158959864 -23455378 + tRNA-Arg-AGG tRNA tRNA 1 38 -38 189 216 0 0 chr6 158960518 158960555 -23454687 - L2 LINE L2 -16 3256 3220 24 0 0 0 chr6 158960684 158960708 -23454534 + AT_rich Low_complexity Low_complexity 1 24 0 288 111 74 0 chr6 158960719 158960773 -23454469 + L1MD2 LINE L1 6302 6359 0 355 263 71 35 chr6 158961006 158961204 -23454038 + L1M4 LINE L1 5119 5323 -823 720 190 97 56 chr6 158961327 158961522 -23453720 + MER63A DNA MER1_type 2 204 -6 620 221 79 8 chr6 158961621 158961817 -23453425 - L1M3 LINE L1 -648 5523 5311 313 311 54 29 chr6 158961871 158962314 -23452928 - L1M3 LINE L1 -906 5240 4787 2491 80 0 3 chr6 158962563 158962875 -23452367 + AluY SINE Alu 1 311 0 233 325 44 13 chr6 158962935 158963163 -23452079 - L1M3 LINE L1 -1549 4597 4363 1733 53 0 107 chr6 158963364 158963626 -23451616 + L1PA8 LINE L1 5619 5852 -320 2020 147 0 19 chr6 158965175 158965488 -23449754 - AluJb SINE Alu -5 307 1 740 243 49 18 chr6 158965643 158965869 -23449373 - MIR SINE MIR -28 234 2 362 224 32 72 chr6 158966010 158966135 -23449107 + L2 LINE L2 3192 3311 -2 1237 174 50 99 chr6 158966320 158966561 -23448681 - MLT1A1 LTR MaLR 0 365 148 2065 149 0 0 chr6 158966561 158966862 -23448380 - AluSx SINE Alu -11 301 1 1237 174 50 99 chr6 158966862 158967004 -23448238 - MLT1A1 LTR MaLR -217 148 1 345 333 37 7 chr6 158968616 158968751 -23446491 - L2 LINE L2 0 3272 3134 24 0 0 0 chr6 158968981 158969005 -23446237 + AT_rich Low_complexity Low_complexity 1 24 0 1459 176 97 0 chr6 158969005 158969272 -23445970 - AluJo SINE Alu -19 293 1 255 330 195 13 chr6 158969428 158969664 -23445578 - L2 LINE L2 -815 2499 2221 210 37 0 0 chr6 158969851 158969878 -23445364 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1416 256 102 7 chr6 158970318 158970729 -23444513 - LTR16B LTR ERVL -14 450 1 619 238 30 55 chr6 158970730 158970877 -23444365 - MIR SINE MIR -61 201 59 520 257 43 48 chr6 158970877 158971087 -23444155 - MER63A DNA MER1_type -1 209 1 619 238 30 55 chr6 158971087 158971141 -23444101 - MIR SINE MIR -203 59 5 198 316 123 26 chr6 158971280 158971394 -23443848 + L2 LINE L2 3139 3263 -9 201 355 33 8 chr6 158972145 158972266 -23442976 - L2 LINE L2 -1 3312 3189 295 286 187 46 chr6 158972327 158972589 -23442653 - L2 LINE L2 0 3272 2974 2127 152 0 0 chr6 158972755 158973065 -23442177 + AluSx SINE Alu 1 310 -2 23 68 0 0 chr6 158974641 158974685 -23440557 + AT_rich Low_complexity Low_complexity 1 44 0 616 233 52 16 chr6 158975364 158975557 -23439685 - L2 LINE L2 0 3313 3114 1108 231 83 57 chr6 158975655 158975824 -23439418 + Charlie4a DNA MER1_type 19 182 -1779 1975 35 0 0 chr6 158975824 158976056 -23439186 - L1PA5 LINE L1 0 6154 5923 1108 231 83 57 chr6 158976056 158976345 -23438897 + Charlie4a DNA MER1_type 182 489 -19 * 1409 216 27 69 chr6 158976336 158976686 -23438556 - Charlie1a DNA MER1_type -2370 391 59 1857 53 140 8 chr6 158976686 158976950 -23438292 + AluY SINE Alu 1 299 -2 1409 216 27 69 chr6 158976950 158977007 -23438235 - Charlie1a DNA MER1_type -2702 59 1 876 143 21 0 chr6 158977297 158977437 -23437805 - Charlie4 DNA MER1_type -1 1960 1818 2031 148 6 3 chr6 158978016 158978341 -23436901 + MSTA LTR MaLR 1 326 -102 804 133 7 93 chr6 158978444 158978559 -23436683 + MSTA LTR MaLR 289 390 -38 2170 137 3 10 chr6 158978559 158978873 -23436369 - AluSx SINE Alu 0 312 1 804 133 7 93 chr6 158978873 158978908 -23436334 + MSTA LTR MaLR 390 426 -2 2145 103 7 0 chr6 158979643 158979924 -23435318 - AluSx SINE Alu -29 283 1 302 327 19 0 chr6 158979935 158980039 -23435203 - MIR SINE MIR -63 145 40 844 249 51 39 chr6 158980201 158980458 -23434784 + Charlie8 DNA MER1_type 5 264 -2153 2085 133 3 0 chr6 158980834 158981120 -23434122 - AluSx SINE Alu -25 287 1 674 218 95 0 chr6 158981532 158981711 -23433531 - L1PA16 LINE L1 -13 6153 5958 255 103 0 0 chr6 158982052 158982091 -23433151 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 26 0 0 0 chr6 158982421 158982447 -23432795 + AT_rich Low_complexity Low_complexity 1 26 0 289 233 23 12 chr6 158984824 158984910 -23430332 + GA-rich Low_complexity Low_complexity 2 88 0 462 269 108 67 chr6 158985136 158985469 -23429773 + L1MEd LINE L1 848 1166 -1636 2291 106 3 3 chr6 158985469 158985770 -23429472 - AluY SINE Alu -10 301 1 462 269 108 67 chr6 158985770 158986105 -23429137 + L1MEd LINE L1 1166 1907 -895 23 0 0 0 chr6 158986757 158986780 -23428462 + AT_rich Low_complexity Low_complexity 1 23 0 2357 110 0 0 chr6 158986896 158987206 -23428036 - AluSx SINE Alu -2 310 1 21 36 0 0 chr6 158987236 158987264 -23427978 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr6 158988523 158988565 -23426677 + AT_rich Low_complexity Low_complexity 1 42 0 1045 156 29 58 chr6 158989278 158989483 -23425759 - AluJb SINE Alu -30 282 84 209 161 0 0 chr6 158990022 158990053 -23425189 + polypyrimidine Low_complexity Low_complexity 2 32 0 4833 93 13 15 chr6 158990509 158991187 -23424055 - L1PA10 LINE L1 -2 6166 5490 2523 78 0 13 chr6 158991506 158991677 -23423565 - AluSx SINE Alu -8 304 137 2292 60 40 43 chr6 158991677 158991978 -23423264 - AluY SINE Alu -11 300 1 2523 78 0 13 chr6 158991978 158992010 -23423232 - AluSx SINE Alu -175 137 1 875 67 0 0 chr6 158992010 158992114 -23423128 - AluSq/x SINE Alu -208 104 1 1122 290 88 37 chr6 158993268 158993924 -23421318 + HAL1 LINE L1 754 1443 -1064 246 81 0 0 chr6 158993951 158993988 -23421254 + (CA)n Simple_repeat Simple_repeat 2 38 0 314 226 36 0 chr6 158994052 158994136 -23421106 + HAL1 LINE L1 1687 1773 -734 25 0 0 0 chr6 158994351 158994376 -23420866 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 158994389 158994419 -23420823 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr6 158994433 158994456 -23420786 + AT_rich Low_complexity Low_complexity 1 23 0 2395 91 3 0 chr6 158995003 158995310 -23419932 + AluSg SINE Alu 1 308 -2 2453 121 10 34 chr6 158995499 158995911 -23419331 + L1MA2 LINE L1 5803 6204 -100 580 98 0 146 chr6 158995911 158995959 -23419283 - LOR1-int LTR ERV1 -7025 1095 1074 1945 107 0 4 chr6 158995959 158996222 -23419020 + AluSx SINE Alu 41 302 -10 580 98 0 146 chr6 158996222 158996296 -23418946 - LOR1-int LTR ERV1 -7046 1074 991 24 0 0 0 chr6 158997190 158997214 -23418028 + AT_rich Low_complexity Low_complexity 1 24 0 468 309 29 30 chr6 158997345 158997526 -23417716 - MIR SINE MIR -62 146 7 1935 107 89 4 chr6 158997659 158997939 -23417303 + AluSq SINE Alu 2 305 -8 287 224 17 147 chr6 158997980 158998096 -23417146 - MIR SINE MIR -66 142 42 311 276 205 0 chr6 159000878 159001005 -23414237 - L2 LINE L2 0 3313 3161 2440 60 7 0 chr6 159001486 159001784 -23413458 + AluY SINE Alu 1 300 -11 432 256 111 63 chr6 159001867 159002184 -23413058 - L1MC4a LINE L1 -97 6024 5691 351 0 0 0 chr6 159002190 159002229 -23413013 + (CA)n Simple_repeat Simple_repeat 2 40 0 184 225 0 0 chr6 159003141 159003181 -23412061 - L2 LINE L2 -4 3309 3270 186 43 0 0 chr6 159005192 159005215 -23410027 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 206 261 109 43 chr6 159005501 159005639 -23409603 - L2 LINE L2 -160 3112 2966 21 0 0 0 chr6 159005685 159005706 -23409536 + AT_rich Low_complexity Low_complexity 1 21 0 2390 95 0 0 chr6 159006708 159007014 -23408228 + AluSq SINE Alu 1 306 -7 309 250 60 0 chr6 159009294 159009378 -23405864 - L2 LINE L2 -10 3262 3174 214 378 22 7 chr6 159009568 159009703 -23405539 + MIR3 SINE MIR 9 145 -63 467 291 105 19 chr6 159011122 159011332 -23403910 + MIR SINE MIR 17 244 -18 267 31 0 0 chr6 159011341 159011373 -23403869 + (ATG)n Simple_repeat Simple_repeat 1 32 0 423 257 64 31 chr6 159011562 159011843 -23403399 - MER102a DNA MER1_type -10 320 5 418 264 164 29 chr6 159012459 159012599 -23402643 + MIR SINE MIR 47 205 -57 615 159 26 9 chr6 159013554 159013667 -23401575 - LTR48B LTR ERV1 0 644 530 920 134 67 13 chr6 159013667 159013816 -23401426 + FRAM SINE Alu 1 156 -20 2708 128 0 15 chr6 159013821 159014226 -23401016 - LTR48B LTR ERV1 -116 528 130 562 241 115 16 chr6 159015137 159015358 -23399884 + MIR SINE MIR 18 261 -1 6454 102 21 13 chr6 159015481 159016465 -23398777 - L1MA4A LINE L1 -7 6296 5304 1025 96 18 7 chr6 159017485 159017641 -23397601 - L1MA2 LINE L1 0 6300 6126 1091 68 15 184 chr6 159017858 159018038 -23397204 - L1MA2 LINE L1 -38 6266 6168 2226 92 0 0 chr6 159018038 159018320 -23396922 - AluSc SINE Alu -27 282 1 1091 68 15 184 chr6 159018320 159018475 -23396767 - L1MA2 LINE L1 -136 6168 5988 230 365 78 5 chr6 159018484 159018676 -23396566 - MARNA DNA Mariner -154 432 227 590 211 16 0 chr6 159018676 159018799 -23396443 + L1ME LINE L1 5043 5167 -979 4131 145 24 108 chr6 159018807 159019626 -23395616 + L1MB4 LINE L1 5069 5772 -408 2416 88 3 0 chr6 159019626 159019923 -23395319 + AluSp SINE Alu 1 298 -15 4131 145 24 108 chr6 159019923 159020277 -23394965 + L1MB4 LINE L1 5772 6154 -26 704 143 92 8 chr6 159020419 159020538 -23394704 + AluJ SINE Alu 3 131 -181 929 146 80 0 chr6 159021854 159021991 -23393251 + AluJ SINE Alu 137 284 -18 21 0 0 0 chr6 159024025 159024046 -23391196 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 159024282 159024306 -23390936 + AT_rich Low_complexity Low_complexity 1 24 0 231 245 20 102 chr6 159025013 159025111 -23390131 - LTR34 LTR ERV1 -32 667 578 2291 104 7 0 chr6 159025213 159025521 -23389721 + AluY SINE Alu 1 310 -1 2133 164 18 20 chr6 159025794 159026091 -23389151 - MLT1B LTR MaLR -1 389 92 2858 82 19 21 chr6 159026091 159026467 -23388775 + THE1C LTR MaLR 1 375 0 2133 164 18 20 chr6 159026467 159026559 -23388683 - MLT1B LTR MaLR -298 92 1 290 222 14 42 chr6 159026650 159026722 -23388520 - MIR3 SINE MIR -33 175 106 26 0 0 0 chr6 159027010 159027036 -23388206 + AT_rich Low_complexity Low_complexity 1 26 0 181 229 0 0 chr6 159029152 159029187 -23386055 - MER5A DNA MER1_type -154 35 1 186 372 58 15 chr6 159030373 159030510 -23384732 - MIR SINE MIR -71 191 49 311 344 102 8 chr6 159030752 159030880 -23384362 - MIR3 SINE MIR -67 141 2 284 268 107 67 chr6 159032051 159032275 -23382967 + L1ME LINE L1 5367 5599 -522 645 264 20 59 chr6 159034079 159034333 -23380909 - MIR SINE MIR -1 261 18 207 0 0 0 chr6 159034345 159034368 -23380874 + (TC)n Simple_repeat Simple_repeat 2 24 0 710 149 9 0 chr6 159036574 159036681 -23378561 - AluJb SINE Alu -11 301 194 1964 119 65 0 chr6 159038038 159038331 -23376911 - AluSx SINE Alu 0 312 1 233 316 69 14 chr6 159039461 159039679 -23375563 + L1ME LINE L1 5648 5877 -244 306 233 11 33 chr6 159039846 159039936 -23375306 + (TATATG)n Simple_repeat Simple_repeat 1 88 0 180 0 0 0 chr6 159040270 159040290 -23374952 + (TG)n Simple_repeat Simple_repeat 1 20 0 1340 168 46 80 chr6 159040656 159041007 -23374235 - MER44D DNA MER2_type 0 609 1 2183 83 0 0 chr6 159041063 159041328 -23373914 - AluSg SINE Alu -45 265 1 516 267 70 0 chr6 159041432 159041604 -23373638 - L1ME4a LINE L1 -69 6052 5869 223 315 56 0 chr6 159042725 159042814 -23372428 + L2 LINE L2 3165 3258 -55 231 246 0 16 chr6 159042827 159042888 -23372354 + (TGAA)n Simple_repeat Simple_repeat 2 61 0 2132 73 3 36 chr6 159043085 159043386 -23371856 + AluSx SINE Alu 13 303 -9 292 313 145 11 chr6 159044536 159044715 -23370527 + MIR SINE MIR 6 208 -54 753 172 0 30 chr6 159045751 159045885 -23369357 + FLAM_A SINE Alu 3 132 -1 2085 111 7 3 chr6 159046191 159046479 -23368763 + AluSx SINE Alu 15 303 -9 794 149 85 80 chr6 159046815 159046898 -23368344 + MER5A DNA MER1_type 1 82 -107 1955 104 72 4 chr6 159046898 159047176 -23368066 + AluSg SINE Alu 1 297 -13 794 149 85 80 chr6 159047176 159047280 -23367962 + MER5A DNA MER1_type 82 189 0 251 268 18 0 chr6 159047315 159047371 -23367871 + L2 LINE L2 3215 3271 -1 234 0 0 0 chr6 159049493 159049519 -23365723 + (TG)n Simple_repeat Simple_repeat 2 27 0 26 0 0 0 chr6 159049523 159049549 -23365693 + AT_rich Low_complexity Low_complexity 1 26 0 190 322 141 8 chr6 159050682 159050803 -23364439 + L2 LINE L2 3124 3260 -12 350 326 109 43 chr6 159050920 159051104 -23364138 + L1PB4 LINE L1 585 780 -6069 8405 211 20 33 chr6 159051512 159054172 -23361070 + L1PB4 LINE L1 1067 3663 -3185 1524 82 14 5 chr6 159054172 159054380 -23360862 + L1MA2 LINE L1 6095 6304 0 8405 211 20 33 chr6 159054380 159055505 -23359737 + L1PB4 LINE L1 3663 4802 -2046 221 56 0 28 chr6 159055508 159055544 -23359698 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3798 23 0 0 chr6 159055544 159055973 -23359269 - L1PA2 LINE L1 -22 6133 5705 * 6384 162 6 37 chr6 159055972 159056404 -23358838 + L1PB4 LINE L1 4789 5233 -1625 2328 118 47 19 chr6 159056404 159056769 -23358473 - THE1C LTR MaLR 0 375 1 6384 162 6 37 chr6 159056769 159057641 -23357601 + L1PB4 LINE L1 5233 6131 -727 2224 115 0 0 chr6 159057641 159057929 -23357313 + AluSg SINE Alu 1 288 -22 6384 162 6 37 chr6 159057929 159058263 -23356979 + L1PB4 LINE L1 6131 6383 -475 2073 132 10 13 chr6 159058263 159058567 -23356675 + AluSx SINE Alu 1 303 -9 6384 162 6 37 chr6 159058567 159058677 -23356565 + L1PB4 LINE L1 6383 6495 -363 239 164 16 0 chr6 159058699 159058760 -23356482 + (TA)n Simple_repeat Simple_repeat 2 63 0 267 184 0 0 chr6 159058760 159058809 -23356433 - L1P5 LINE L1 -323 5833 5785 2222 135 6 41 chr6 159058809 159059173 -23356069 + L1PB4 LINE L1 6499 6849 -9 29 28 0 0 chr6 159059173 159059209 -23356033 + AT_rich Low_complexity Low_complexity 1 36 0 515 127 13 0 chr6 159059462 159059541 -23355701 - MADE1 DNA Mariner 0 80 1 409 306 64 13 chr6 159059544 159059701 -23355541 - MIR SINE MIR -74 188 24 413 75 118 0 chr6 159059903 159060064 -23355178 + (TA)n Simple_repeat Simple_repeat 1 180 0 419 0 20 0 chr6 159060428 159060479 -23354763 + (TG)n Simple_repeat Simple_repeat 1 52 0 405 293 20 52 chr6 159060606 159060789 -23354453 - MIR SINE MIR -50 212 30 882 161 15 0 chr6 159060921 159061051 -23354191 + FLAM_C SINE Alu 1 132 -1 2208 121 3 0 chr6 159061488 159061785 -23353457 + AluSg SINE Alu 1 298 -12 240 363 26 9 chr6 159062427 159062540 -23352702 - L2 LINE L2 -241 3031 2917 532 299 14 29 chr6 159064369 159064576 -23350666 - HAL1 LINE L1 -3 2504 2301 493 278 39 10 chr6 159064633 159064838 -23350404 - HAL1 LINE L1 -303 2204 1994 487 268 45 30 chr6 159065181 159065379 -23349863 - HAL1 LINE L1 -710 1797 1597 558 0 0 0 chr6 159065396 159065458 -23349784 + (TC)n Simple_repeat Simple_repeat 1 62 0 1103 263 125 52 chr6 159065461 159066034 -23349208 - HAL1 LINE L1 -1068 1439 796 1769 165 3 38 chr6 159066034 159066349 -23348893 + AluJb SINE Alu 1 304 -8 1103 263 125 52 chr6 159066349 159066529 -23348713 - HAL1 LINE L1 -1711 796 631 247 290 9 75 chr6 159067020 159067127 -23348115 - HAL1 LINE L1 -2406 101 2 626 210 0 4 chr6 159068191 159068382 -23346860 + MER5C DNA MER1_type 5 269 -55 1645 199 111 10 chr6 159068794 159069201 -23346041 + MLT1C LTR MaLR 20 467 0 370 336 91 11 chr6 159069352 159069715 -23345527 + L1ME4a LINE L1 5710 6101 -20 2076 104 3 7 chr6 159069779 159070066 -23345176 - AluSp SINE Alu -4 309 24 266 335 146 0 chr6 159070076 159070234 -23345008 - MIR SINE MIR -74 188 8 2068 106 11 0 chr6 159070939 159071221 -23344021 + AluSq SINE Alu 1 285 -28 22 35 0 0 chr6 159071221 159071250 -23343992 + AT_rich Low_complexity Low_complexity 1 29 0 230 333 0 0 chr6 159071679 159071757 -23343485 - MIR SINE MIR -2 260 183 217 278 0 0 chr6 159072562 159072616 -23342626 + L2 LINE L2 3256 3309 -4 * 453 284 8 0 chr6 159072598 159072732 -23342510 - MIR SINE MIR -10 252 118 364 77 0 0 chr6 159074566 159074618 -23340624 - MADE1 DNA Mariner 0 80 29 599 284 60 0 chr6 159075658 159075841 -23339401 + MIR SINE MIR 4 197 -65 1990 113 35 3 chr6 159077429 159077712 -23337530 + AluSx SINE Alu 6 297 -15 322 252 67 100 chr6 159077887 159078157 -23337085 + L1ME4a LINE L1 5353 5613 -508 382 271 33 16 chr6 159078167 159078289 -23336953 + L1ME2 LINE L1 6034 6157 -7 324 270 243 32 chr6 159078300 159078670 -23336572 + L1ME4a LINE L1 5601 6048 -73 285 29 0 0 chr6 159079097 159079131 -23336111 + (CA)n Simple_repeat Simple_repeat 2 35 0 1594 195 0 29 chr6 159080928 159081068 -23334174 + AluJb SINE Alu 1 144 -168 2304 101 0 3 chr6 159081068 159081366 -23333876 + AluSg SINE Alu 3 299 -11 1594 195 0 29 chr6 159081366 159081538 -23333704 + AluJb SINE Alu 144 304 -8 210 245 0 0 chr6 159134055 159134104 -23281138 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 337 85 0 0 chr6 159135322 159135369 -23279873 - L1P2 LINE L1 -655 5500 5454 3521 46 2 0 chr6 159135369 159135802 -23279440 + L1PA5 LINE L1 5720 6154 0 201 39 0 0 chr6 159135805 159135831 -23279411 + (TA)n Simple_repeat Simple_repeat 2 27 0 285 29 0 0 chr6 159135833 159135867 -23279375 + (GA)n Simple_repeat Simple_repeat 2 35 0 216 97 0 0 chr6 159136800 159136831 -23278411 + (T)n Simple_repeat Simple_repeat 1 31 0 43341 38 22 1 chr6 159136833 159142859 -23272383 - L1PA2 LINE L1 -1 6154 3 538 284 60 61 chr6 159143737 159144241 -23271001 + L2 LINE L2 2804 3313 0 2228 117 70 3 chr6 159144639 159144980 -23270262 - THE1B LTR MaLR 0 364 1 537 244 19 19 chr6 159145361 159145517 -23269725 - L2 LINE L2 0 3313 3158 432 237 127 101 chr6 159147457 159147655 -23267587 - MIR SINE MIR -59 203 1 422 288 46 13 chr6 159147924 159148093 -23267149 - MIR3 SINE MIR -21 187 13 21 0 0 0 chr6 159148222 159148243 -23266999 + AT_rich Low_complexity Low_complexity 1 21 0 197 283 0 19 chr6 159148840 159148893 -23266349 + L2 LINE L2 3220 3271 -42 210 284 15 45 chr6 159148921 159148988 -23266254 - L2 LINE L2 -18 3254 3190 313 191 48 60 chr6 159149038 159149122 -23266120 + L1M4b LINE L1 11 93 -6766 1143 207 68 131 chr6 159149135 159149677 -23265565 - MER67C LTR ERV1 -3 511 4 797 225 52 9 chr6 159149677 159149908 -23265334 + L1M4b LINE L1 116 356 -6503 644 245 49 0 chr6 159149930 159150114 -23265128 + MLT1E1 LTR MaLR 435 627 -27 221 266 195 0 chr6 159150935 159151048 -23264194 + MIR SINE MIR 35 169 -93 682 314 190 29 chr6 159151201 159151568 -23263674 + L2 LINE L2 2349 2656 -657 2065 104 59 3 chr6 159151568 159151857 -23263385 + AluSc SINE Alu 1 305 -4 682 314 190 29 chr6 159151857 159152331 -23262911 + L2 LINE L2 2656 3307 -6 2407 87 0 0 chr6 159152360 159152659 -23262583 - AluSc SINE Alu -10 299 1 225 214 29 29 chr6 159153401 159153471 -23261771 + MER5B DNA MER1_type 1 70 -108 537 254 91 18 chr6 159153556 159153721 -23261521 + MER5B DNA MER1_type 2 178 0 263 167 15 0 chr6 159153767 159153833 -23261409 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 507 253 82 18 chr6 159153869 159154039 -23261203 + MIR SINE MIR 78 258 -4 241 246 0 15 chr6 159154045 159154110 -23261132 - L2 LINE L2 0 3272 3209 233 386 68 8 chr6 159155365 159155497 -23259745 - L2 LINE L2 0 3272 3133 213 117 17 150 chr6 159155750 159155810 -23259432 - L2 LINE L2 -69 3244 3193 1042 197 14 36 chr6 159155957 159156180 -23259062 - MER20 DNA MER1_type 0 219 2 494 366 14 20 chr6 159156794 159157138 -23258104 + L2 LINE L2 2248 2589 -725 275 347 13 0 chr6 159157123 159157198 -23258044 + L2 LINE L2 3197 3272 0 * 2042 128 251 58 chr6 159157625 159158140 -23257102 - LTR18B LTR ERVL 0 614 1 2126 111 61 25 chr6 159158572 159158934 -23256308 + THE1C LTR MaLR 1 375 0 860 190 133 10 chr6 159159347 159159542 -23255700 - MER20 DNA MER1_type 0 219 1 201 278 96 35 chr6 159159808 159159923 -23255319 - MIR SINE MIR -71 191 70 1758 86 12 20 chr6 159160135 159160379 -23254863 - AluSc SINE Alu -67 242 1 2530 26 0 42 chr6 159160757 159161068 -23254174 + AluY SINE Alu 1 298 -13 228 296 0 28 chr6 159161219 159161290 -23253952 - MIR SINE MIR -1 261 193 363 381 82 0 chr6 159161291 159161522 -23253720 - MIR SINE MIR 0 262 13 1432 274 79 14 chr6 159161679 159162367 -23252875 - L1ME3A LINE L1 -139 6311 5567 860 297 78 21 chr6 159162462 159163384 -23251858 - L1ME3A LINE L1 -992 5434 4460 973 287 85 69 chr6 159163434 159164187 -23251055 - L1ME3A LINE L1 -2131 4295 3531 870 275 78 0 chr6 159164190 159164666 -23250576 - L1ME3A LINE L1 -2778 3648 3136 23 0 0 0 chr6 159164674 159164697 -23250545 + AT_rich Low_complexity Low_complexity 1 23 0 720 197 118 8 chr6 159164706 159164936 -23250306 + MSTA LTR MaLR 1 253 -173 6636 144 7 38 chr6 159164958 159166163 -23249079 + THE1-int LTR MaLR 173 1339 -241 883 278 79 52 chr6 159166168 159166526 -23248716 - L1ME3A LINE L1 -3961 2646 2299 456 67 0 0 chr6 159166526 159166586 -23248656 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 883 278 79 52 chr6 159166586 159166653 -23248589 - L1ME3A LINE L1 -4308 2299 2235 3187 165 50 6 chr6 159166653 159167300 -23247942 + L1MA4 LINE L1 5620 6294 -6 883 278 79 52 chr6 159167300 159167708 -23247534 - L1ME3A LINE L1 -4372 2235 1789 231 286 109 29 chr6 159167847 159168022 -23247220 - HAL1 LINE L1 -832 1675 1487 465 296 92 56 chr6 159168068 159168600 -23246642 - L1MEd LINE L1 -4920 1687 1025 312 253 116 27 chr6 159169933 159170023 -23245219 + L1ME4a LINE L1 5955 6064 -57 6378 158 45 3 chr6 159170023 159171205 -23244037 + Tigger3b DNA MER2_type 1 1231 0 312 253 116 27 chr6 159171205 159171260 -23243982 + L1ME4a LINE L1 6064 6113 -8 407 253 64 52 chr6 159171773 159172006 -23243236 - MER106A DNA MER1_type 0 236 1 1929 133 21 0 chr6 159172165 159172451 -23242791 - AluSx SINE Alu -1 311 20 1223 106 0 0 chr6 159172480 159172641 -23242601 - AluSg/x SINE Alu -18 294 134 326 276 141 72 chr6 159172700 159172940 -23242302 - MLT1J1 LTR MaLR 0 450 180 2162 114 0 3 chr6 159172940 159173239 -23242003 - AluSx SINE Alu -14 298 1 326 276 141 72 chr6 159173239 159173317 -23241925 - MLT1J1 LTR MaLR -270 180 109 7383 120 84 54 chr6 159173327 159175070 -23240172 - pTR5 LTR ERV1 -9 2429 69 691 36 0 0 chr6 159175366 159175450 -23239792 - AluY SINE Alu -13 298 215 4684 38 0 2 chr6 159176032 159176591 -23238651 - LTR6B LTR ERV1 0 558 1 2103 120 0 32 chr6 159176613 159176921 -23238321 - AluSq SINE Alu -15 298 1 24 0 0 0 chr6 159177240 159177264 -23237978 + AT_rich Low_complexity Low_complexity 1 24 0 273 248 98 13 chr6 159177313 159177466 -23237776 - LTR67 LTR ERVL -5 552 387 393 328 69 9 chr6 159178734 159178959 -23236283 + MIR SINE MIR 16 250 -12 848 180 61 130 chr6 159179934 159180279 -23234963 + MER33 DNA MER1_type 3 323 -1 248 326 54 39 chr6 159180802 159180931 -23234311 - MIR3 SINE MIR -76 132 2 2206 103 7 7 chr6 159183219 159183519 -23231723 + AluSx SINE Alu 1 300 -12 549 51 0 0 chr6 159185338 159185417 -23229825 - L1PB1 LINE L1 -1 6150 6072 5370 140 13 4 chr6 159185806 159186814 -23228428 - L1PA16 LINE L1 -9 6157 5137 3304 220 81 87 chr6 159186867 159189116 -23226126 - L1MD2 LINE L1 -2 6357 4106 877 164 6 6 chr6 159189511 159189688 -23225554 + L1MA4 LINE L1 6118 6294 -6 1167 184 10 91 chr6 159189717 159189811 -23225431 - L1MA7 LINE L1 -2 6289 6189 2262 73 3 19 chr6 159189811 159190125 -23225117 + AluY SINE Alu 3 311 0 1167 184 10 91 chr6 159190125 159190255 -23224987 - L1MA7 LINE L1 -102 6189 6107 4980 183 56 80 chr6 159190255 159191515 -23223727 + Tigger3b DNA MER2_type 1 1230 -1 1167 184 10 91 chr6 159191515 159191650 -23223592 - L1MA7 LINE L1 -184 6107 5963 1741 160 75 19 chr6 159191651 159192013 -23223229 + L1M2 LINE L1 5437 5818 -473 181 240 27 0 chr6 159192047 159192122 -23223120 + CT-rich Low_complexity Low_complexity 1 77 0 2232 113 0 3 chr6 159192290 159192582 -23222660 + AluSc SINE Alu 2 292 -17 422 242 3 3 chr6 159192582 159192991 -23222251 + (TA)n Simple_repeat Simple_repeat 1 409 0 338 261 0 23 chr6 159192997 159193085 -23222157 + L1MC4 LINE L1 6618 6703 -1339 1072 333 90 24 chr6 159193094 159193770 -23221472 - L2 LINE L2 -338 2976 2256 332 244 11 0 chr6 159193789 159193879 -23221363 - MER103 DNA DNA -72 94 4 690 206 20 27 chr6 159194520 159194666 -23220576 - Tigger3(Golem) DNA MER2_type 0 3029 2885 1003 136 106 5 chr6 159194668 159194867 -23220375 - Tigger3(Golem) DNA MER2_type -305 2724 2506 361 252 25 42 chr6 159195100 159195219 -23220023 + L2 LINE L2 2542 2658 -656 670 250 56 26 chr6 159195249 159195553 -23219689 - L1ME3A LINE L1 -5 6165 5853 230 262 65 42 chr6 159195574 159195742 -23219500 + L2 LINE L2 2694 2865 -449 2203 100 7 19 chr6 159195843 159196153 -23219089 + AluSx SINE Alu 1 306 -6 188 232 134 24 chr6 159196156 159196238 -23219004 - MIR SINE MIR -159 103 13 270 279 44 49 chr6 159196617 159196782 -23218460 + MIR SINE MIR 8 261 -1 183 407 49 0 chr6 159197996 159198077 -23217165 + MIR3 SINE MIR 74 158 -50 21 57 0 0 chr6 159198087 159198122 -23217120 + AT_rich Low_complexity Low_complexity 1 35 0 1912 225 30 38 chr6 159198519 159199021 -23216221 - MLT1D LTR MaLR -7 498 1 370 300 58 0 chr6 159200008 159200128 -23215114 - L2 LINE L2 -5 3308 3182 2111 117 0 0 chr6 159200383 159200695 -23214547 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 159201014 159201036 -23214206 + AT_rich Low_complexity Low_complexity 1 22 0 696 319 76 51 chr6 159201848 159202884 -23212358 - L2 LINE L2 0 3313 2248 526 319 26 56 chr6 159202889 159203159 -23212083 - MLT1J LTR MaLR 0 511 250 327 247 26 0 chr6 159203307 159203384 -23211858 - MLT1L LTR MaLR -536 79 1 466 325 79 15 chr6 159203394 159203659 -23211583 - L2 LINE L2 -1091 2223 1942 7976 29 6 0 chr6 159203905 159204986 -23210256 - L1PA4 LINE L1 0 6155 5070 9644 40 20 23 chr6 159204986 159206207 -23209035 + L1PA4 LINE L1 3862 5078 -1068 1983 120 3 44 chr6 159206418 159206735 -23208507 + AluSx SINE Alu 1 304 -8 381 323 45 15 chr6 159206991 159207124 -23208118 - L2 LINE L2 -2 3270 3134 373 281 16 39 chr6 159207439 159207567 -23207675 - MIR SINE MIR -64 144 20 488 204 102 66 chr6 159207626 159207763 -23207479 - MER20 DNA MER1_type -72 147 6 918 239 10 10 chr6 159208296 159208505 -23206737 - MER3 DNA MER1_type 0 209 1 240 122 0 0 chr6 159208528 159208569 -23206673 + (TG)n Simple_repeat Simple_repeat 1 41 0 306 0 0 0 chr6 159208784 159208818 -23206424 + (TG)n Simple_repeat Simple_repeat 1 34 0 2869 27 0 0 chr6 159208985 159209314 -23205928 - L1P2 LINE L1 -505 5650 5322 1427 36 0 0 chr6 159209312 159209478 -23205764 + L1HS LINE L1 5664 5829 -326 * 43243 37 24 1 chr6 159209479 159215485 -23199757 + L1PA3 LINE L1 5 6155 0 1980 122 0 11 chr6 159215624 159215911 -23199331 - AluSg SINE Alu -26 284 1 943 208 6 0 chr6 159216286 159216454 -23198788 + FAM SINE Alu 1 169 -6 312 320 57 21 chr6 159216572 159216853 -23198389 - L1MDa LINE L1 -4512 2028 1738 1957 198 3 3 chr6 159216863 159217207 -23198035 - L1MD1 LINE L1 -8 6470 6127 2116 131 61 58 chr6 159217214 159217341 -23197901 - Ricksha DNA DNA -9 3242 3117 1789 116 0 0 chr6 159217341 159217582 -23197660 - AluSx SINE Alu -9 303 63 2599 59 0 7 chr6 159217589 159217896 -23197346 - AluY SINE Alu -6 305 1 2116 131 61 58 chr6 159217896 159218172 -23197070 - Ricksha DNA DNA -139 3112 2830 483 142 97 62 chr6 159218179 159218292 -23196950 - MLT2B3 LTR ERVL -429 125 9 631 185 0 0 chr6 159218303 159218411 -23196831 - ERVL-B3 LTR ERVL -11 5753 5646 694 138 146 0 chr6 159218413 159218536 -23196706 - Ricksha DNA DNA -1905 141 1 2764 185 65 44 chr6 159218536 159218619 -23196623 - L1MD1 LINE L1 -343 6135 6055 2144 106 18 0 chr6 159218619 159218927 -23196315 - AluSx SINE Alu 0 313 1 2764 185 65 44 chr6 159218927 159219531 -23195711 - L1MD1 LINE L1 -423 6055 5425 1827 149 17 17 chr6 159219531 159219833 -23195409 - AluJo SINE Alu -10 302 1 2764 185 65 44 chr6 159219833 159220047 -23195195 - L1MD1 LINE L1 -1053 5425 5217 350 107 107 0 chr6 159220184 159220240 -23195002 - Alu SINE Alu -246 62 1 1398 155 9 0 chr6 159220920 159221139 -23194103 + AluJb SINE Alu 8 228 -84 28 0 0 0 chr6 159221158 159221186 -23194056 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 159221290 159221311 -23193931 + AT_rich Low_complexity Low_complexity 1 21 0 1370 151 34 50 chr6 159221328 159221567 -23193675 + MER46A DNA MER2_type 2 236 0 2184 128 0 3 chr6 159221832 159222138 -23193104 - AluSx SINE Alu -7 305 1 1860 140 9 58 chr6 159222556 159222884 -23192358 - AluSx SINE Alu 0 312 1 3181 201 44 62 chr6 159223007 159223262 -23191980 - L1MC4 LINE L1 0 8042 7784 1620 53 63 0 chr6 159223262 159223469 -23191773 + AluY SINE Alu 89 308 -3 3181 201 44 62 chr6 159223469 159223800 -23191442 - L1MC4 LINE L1 -258 7784 7448 2257 108 0 0 chr6 159223800 159224096 -23191146 + AluSx SINE Alu 1 296 -16 3181 201 44 62 chr6 159224096 159224169 -23191073 - L1MC4 LINE L1 -594 7448 7375 2465 59 0 3 chr6 159224169 159224472 -23190770 + AluY SINE Alu 1 302 -9 3181 201 44 62 chr6 159224472 159224739 -23190503 - L1MC4 LINE L1 -667 7375 7131 5035 152 27 51 chr6 159224787 159224999 -23190243 - L1MA5 LINE L1 -2 6298 6082 2095 92 27 17 chr6 159224999 159225291 -23189951 + AluSx SINE Alu 1 295 -17 5035 152 27 51 chr6 159225291 159225605 -23189637 - L1MA5 LINE L1 -218 6082 5762 222 37 0 0 chr6 159225605 159225632 -23189610 + (TATG)n Simple_repeat Simple_repeat 2 28 0 5035 152 27 51 chr6 159225632 159225959 -23189283 - L1MA5 LINE L1 -538 5762 5428 1986 136 10 3 chr6 159225959 159226261 -23188981 - AluSx SINE Alu -7 305 2 5035 152 27 51 chr6 159226261 159227082 -23188160 - L1MA5 LINE L1 -872 5428 4656 2311 106 3 3 chr6 159227085 159227397 -23187845 - AluSx SINE Alu 0 312 1 420 232 43 6 chr6 159227397 159227409 -23187833 - L1MD1 LINE L1 -1661 4721 4711 2370 84 0 40 chr6 159227409 159227592 -23187650 - AluSc SINE Alu 0 309 120 417 66 0 0 chr6 159227592 159227653 -23187589 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 2158 99 0 7 chr6 159227656 159227939 -23187303 - AluSx SINE Alu -30 282 2 2370 84 0 40 chr6 159227939 159228073 -23187169 - AluSc SINE Alu -191 118 1 420 232 43 6 chr6 159228073 159228224 -23187018 - L1MD1 LINE L1 -1671 4711 4552 3877 166 35 33 chr6 159228236 159228822 -23186420 - L1MB3 LINE L1 -1 6182 5592 2137 106 20 7 chr6 159228822 159229115 -23186127 - AluSx SINE Alu -15 297 1 3877 166 35 33 chr6 159229115 159229324 -23185918 - L1MB3 LINE L1 -591 5592 5385 1634 172 45 0 chr6 159229340 159229631 -23185611 - L1MB3 LINE L1 -1 6182 5879 540 176 25 0 chr6 159229631 159229757 -23185485 - L1MD1 LINE L1 -3810 2572 2445 825 185 0 85 chr6 159229757 159229946 -23185296 - FAM SINE Alu 0 49 1 928 131 44 98 chr6 159229953 159230090 -23185152 - L1MD1 LINE L1 -3941 2443 2300 2029 126 7 7 chr6 159230090 159230399 -23184843 + AluSx SINE Alu 2 310 -2 928 131 44 98 chr6 159230399 159230437 -23184805 - L1MD1 LINE L1 -4084 2300 2261 2242 116 10 0 chr6 159230437 159230739 -23184503 - AluSx SINE Alu -7 305 1 928 131 44 98 chr6 159230739 159230836 -23184406 - L1MD1 LINE L1 -4123 2261 2185 1213 240 4 8 chr6 159230836 159231090 -23184152 - AluJo SINE Alu -47 265 13 1546 190 41 38 chr6 159231120 159231462 -23183780 - L1MD1 LINE L1 -5808 576 234 1366 212 42 45 chr6 159231480 159231834 -23183408 - MLT1A1 LTR MaLR -12 353 1 1083 178 5 47 chr6 159231840 159232053 -23183189 - L1MD1 LINE L1 -6180 204 1 * 5162 230 40 54 chr6 159232038 159232383 -23182859 - L1MDa LINE L1 -1818 4722 4374 2024 51 0 0 chr6 159232383 159232617 -23182625 - AluY SINE Alu 0 311 78 5162 230 40 54 chr6 159232617 159233062 -23182180 - L1MDa LINE L1 -2166 4374 3924 2206 102 0 20 chr6 159233062 159233367 -23181875 - AluSx SINE Alu -13 299 1 5162 230 40 54 chr6 159233367 159233579 -23181663 - L1MDa LINE L1 -2616 3924 3711 2447 71 0 3 chr6 159233579 159233875 -23181367 - AluY SINE Alu -16 295 1 5162 230 40 54 chr6 159233875 159234100 -23181142 - L1MDa LINE L1 -2829 3711 3484 2314 112 0 3 chr6 159234100 159234414 -23180828 - AluSq SINE Alu 0 313 1 5162 230 40 54 chr6 159234414 159234495 -23180747 - L1MDa LINE L1 -3056 3484 3403 1697 132 9 117 chr6 159234495 159234829 -23180413 - AluSx SINE Alu -14 298 1 5162 230 40 54 chr6 159234829 159235279 -23179963 - L1MDa LINE L1 -3137 3403 2985 1693 150 13 64 chr6 159235279 159235472 -23179770 - AluJo SINE Alu -14 298 97 2473 76 7 0 chr6 159235472 159235774 -23179468 - AluSp SINE Alu -9 304 1 2266 109 0 0 chr6 159235776 159236070 -23179172 - AluSg SINE Alu -16 294 1 1693 150 13 64 chr6 159236070 159236187 -23179055 - AluJo SINE Alu -216 96 1 734 204 104 0 chr6 159236211 159236412 -23178830 - L1MDa LINE L1 -4670 1870 1649 * 2215 220 115 26 chr6 159236403 159237444 -23177798 - L1MDa LINE L1 -5271 1269 1 2327 97 0 0 chr6 159237508 159237808 -23177434 - AluSx SINE Alu -11 301 2 1941 138 21 7 chr6 159237968 159238259 -23176983 - AluSx SINE Alu -17 295 1 2350 106 0 3 chr6 159238673 159238976 -23176266 + AluSq SINE Alu 1 302 -11 1380 220 71 73 chr6 159239228 159239533 -23175709 - MER119 DNA MER1_type 0 583 180 1943 127 33 0 chr6 159239533 159239835 -23175407 + AluSx SINE Alu 1 311 0 1380 220 71 73 chr6 159239835 159240015 -23175227 - MER119 DNA MER1_type -403 180 1 2294 89 3 0 chr6 159240408 159240700 -23174542 - AluY SINE Alu -18 293 1 1790 169 27 7 chr6 159241108 159241403 -23173839 - AluJo SINE Alu -11 301 1 2554 57 3 0 chr6 159242572 159242871 -23172371 + AluSp SINE Alu 1 300 -13 2043 112 14 10 chr6 159243212 159243508 -23171734 - AluSc SINE Alu -12 297 1 1419 249 7 20 chr6 159244642 159244939 -23170303 - AluJb SINE Alu -9 293 1 1917 163 7 0 chr6 159244954 159245242 -23170000 - AluSx SINE Alu -22 290 1 664 215 23 15 chr6 159245242 159245372 -23169870 - AluJo/FLAM SINE Alu -170 132 2 741 196 182 0 chr6 159245382 159245530 -23169712 - FAM SINE Alu 0 175 1 472 319 68 26 chr6 159245589 159245775 -23169467 - MLT1K LTR MaLR -306 282 88 1819 92 0 0 chr6 159245775 159246004 -23169238 + AluSx SINE Alu 1 229 -83 1869 170 10 7 chr6 159246436 159246736 -23168506 + AluJo SINE Alu 6 306 -6 1815 156 13 16 chr6 159246843 159247150 -23168092 - AluJo SINE Alu -6 306 1 726 162 0 0 chr6 159248585 159248696 -23166546 - FRAM SINE Alu -11 165 55 1757 126 58 11 chr6 159248740 159249018 -23166224 + AluJo SINE Alu 9 299 -13 2381 94 0 0 chr6 159249042 159249340 -23165902 - AluSx SINE Alu -14 298 1 180 0 0 0 chr6 159250990 159251010 -23164232 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr6 159251817 159251841 -23163401 + AT_rich Low_complexity Low_complexity 1 24 0 2243 119 10 0 chr6 159252558 159252860 -23162382 + AluSq SINE Alu 1 305 -8 2406 58 0 32 chr6 159252924 159253232 -23162010 - AluY SINE Alu -13 298 1 2462 63 0 0 chr6 159253277 159253564 -23161678 + AluY SINE Alu 1 287 -24 2227 76 14 14 chr6 159254289 159254580 -23160662 - AluSc SINE Alu -18 291 1 320 261 57 79 chr6 159255304 159255490 -23159752 + L1ME LINE L1 4576 4754 -1392 1778 142 17 30 chr6 159255490 159255792 -23159450 + AluJb SINE Alu 1 298 -14 320 261 57 79 chr6 159255792 159255923 -23159319 + L1ME LINE L1 4754 4886 -1260 2248 92 0 0 chr6 159256020 159256330 -23158912 + AluSx SINE Alu 1 310 0 1726 132 15 68 chr6 159256346 159256489 -23158753 + AluJo SINE Alu 1 150 -162 2054 110 4 4 chr6 159256489 159256797 -23158445 + AluSx SINE Alu 1 308 0 1726 132 15 68 chr6 159256797 159256977 -23158265 + AluJo SINE Alu 150 308 -4 536 255 87 1 chr6 159257408 159257594 -23157648 + L1ME LINE L1 5597 5801 -320 3566 173 84 36 chr6 159257596 159258348 -23156894 + MER21B LTR ERV1 1 788 -75 1466 155 30 116 chr6 159258513 159258848 -23156394 + AluJb SINE Alu 1 306 -6 1219 218 119 29 chr6 159258915 159259094 -23156148 + MER119 DNA MER1_type 5 166 -417 2454 135 34 59 chr6 159259094 159259537 -23155705 + MSTB1 LTR MaLR 1 432 0 1219 218 119 29 chr6 159259537 159259701 -23155541 + MER119 DNA MER1_type 166 379 -204 2317 83 0 0 chr6 159259702 159260017 -23155225 + AluY SINE Alu 2 311 0 385 165 0 71 chr6 159260029 159260114 -23155128 + MER119 DNA MER1_type 505 583 0 863 182 119 16 chr6 159260545 159260632 -23154610 + MER46A DNA MER2_type 1 78 -2653 778 161 0 8 chr6 159260632 159260750 -23154492 + FLAM_C SINE Alu 1 117 -16 863 182 119 16 chr6 159260750 159260974 -23154268 + MER46A DNA MER2_type 78 229 -7 2090 108 0 24 chr6 159261310 159261629 -23153613 + AluSx SINE Alu 1 312 0 22 35 0 0 chr6 159261658 159261687 -23153555 + AT_rich Low_complexity Low_complexity 1 29 0 2123 114 3 25 chr6 159261936 159262112 -23153130 - AluSc SINE Alu -1 308 141 2302 108 0 0 chr6 159262112 159262408 -23152834 - AluSg SINE Alu -12 298 3 2123 114 3 25 chr6 159262408 159262546 -23152696 - AluSc SINE Alu -168 141 1 246 86 0 0 chr6 159262559 159262594 -23152648 - L1MC/D LINE L1 -2084 5724 5690 534 174 91 0 chr6 159263231 159263352 -23151890 + L1ME1 LINE L1 6030 6161 -5 520 177 4 244 chr6 159263967 159264134 -23151108 - MIR SINE MIR -56 206 119 2236 116 14 0 chr6 159264134 159264428 -23150814 + AluSx SINE Alu 1 298 -14 520 177 4 244 chr6 159264428 159264514 -23150728 - MIR SINE MIR -143 119 14 21 36 0 0 chr6 159265768 159265796 -23149446 + AT_rich Low_complexity Low_complexity 1 28 0 2345 80 3 17 chr6 159265882 159266184 -23149058 - AluSp SINE Alu -15 298 1 2155 123 0 10 chr6 159267042 159267352 -23147890 - AluSx SINE Alu -5 307 1 1581 146 62 43 chr6 159268419 159268777 -23146465 + MSTA LTR MaLR 1 428 0 269 262 58 19 chr6 159268841 159268944 -23146298 + MLT1E LTR MaLR 1 107 -435 771 174 15 23 chr6 159268991 159269123 -23146119 - FLAM_A SINE Alu -2 131 1 1504 238 124 37 chr6 159269126 159269584 -23145658 + MLT1E LTR MaLR 96 593 0 529 271 100 104 chr6 159270097 159270692 -23144550 + L1M1 LINE L1 2729 3409 -4337 1551 181 75 10 chr6 159270692 159270985 -23144257 - AluJb SINE Alu 0 312 1 529 271 100 104 chr6 159270985 159271231 -23144011 + L1M1 LINE L1 3409 3655 -4091 2507 56 0 7 chr6 159271241 159271545 -23143697 + AluSq SINE Alu 1 302 -11 1074 151 251 25 chr6 159271755 159271994 -23143248 - AluSg SINE Alu -7 293 1 653 128 0 0 chr6 159272159 159272245 -23142997 - FRAM SINE Alu -25 151 66 1986 114 62 0 chr6 159272263 159272552 -23142690 - AluSx SINE Alu -5 307 1 1866 152 7 14 chr6 159272627 159272942 -23142300 + AluSx SINE Alu 1 313 0 234 0 0 0 chr6 159273488 159273514 -23141728 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2159 92 4 0 chr6 159273519 159273792 -23141450 - AluSg SINE Alu -36 274 1 322 255 45 28 chr6 159274118 159274261 -23140981 - L1ME LINE L1 -334 5836 5699 2371 81 7 3 chr6 159274262 159274559 -23140683 - AluSg SINE Alu -12 298 1 558 0 0 0 chr6 159275394 159275456 -23139786 + (TA)n Simple_repeat Simple_repeat 1 62 0 2244 97 3 7 chr6 159275955 159276255 -23138987 + AluSx SINE Alu 1 299 -13 2271 101 0 25 chr6 159276257 159276574 -23138668 + AluSx SINE Alu 1 309 -3 1249 96 0 28 chr6 159276580 159276758 -23138484 + AluSc SINE Alu 118 290 -19 1002 169 50 15 chr6 159276970 159277171 -23138071 - MER3 DNA MER1_type 0 209 2 597 183 15 69 chr6 159277334 159277465 -23137777 - FLAM_C SINE Alu -18 125 2 1420 109 52 0 chr6 159277933 159278144 -23137098 - AluSg/x SINE Alu 0 312 91 265 224 26 0 chr6 159278376 159278452 -23136790 - MER5A DNA MER1_type -4 185 108 308 289 79 108 chr6 159279032 159279374 -23135868 - L1M2 LINE L1 -5759 1090 759 413 277 82 13 chr6 159279656 159279815 -23135427 - MER5B DNA MER1_type -2 176 7 180 97 0 0 chr6 159280239 159280270 -23134972 + (CCCCCG)n Simple_repeat Simple_repeat 3 33 0 309 248 44 33 chr6 159280438 159280528 -23134714 + FRAM/FAM SINE Alu 4 72 -94 21 0 0 0 chr6 159280528 159280549 -23134693 + AT_rich Low_complexity Low_complexity 1 21 0 2366 93 0 0 chr6 159280559 159280859 -23134383 + AluSx SINE Alu 1 300 -12 1687 157 11 21 chr6 159281986 159282272 -23132970 - AluJo SINE Alu -18 294 12 2317 105 3 3 chr6 159282272 159282578 -23132664 - AluSq SINE Alu -7 306 1 406 323 74 11 chr6 159282712 159282901 -23132341 - MIR SINE MIR -21 241 41 1978 95 11 0 chr6 159283011 159283275 -23131967 + AluSp SINE Alu 34 300 -13 495 0 0 0 chr6 159283275 159283330 -23131912 + (TA)n Simple_repeat Simple_repeat 1 55 0 2468 64 0 0 chr6 159283568 159283866 -23131376 + AluY SINE Alu 1 298 -13 2386 80 0 10 chr6 159284043 159284342 -23130900 - AluSg SINE Alu -14 296 1 838 191 0 50 chr6 159284570 159284802 -23130440 + MER74A LTR ERVL 1 215 -407 4599 147 23 5 chr6 159284802 159285710 -23129532 - L1MA4A LINE L1 0 6303 5319 797 135 0 0 chr6 159285761 159285865 -23129377 - FLAM_C SINE Alu -38 105 2 11085 178 23 16 chr6 159285868 159287576 -23127666 - L1MA4A LINE L1 -815 5331 3603 2237 92 48 0 chr6 159287576 159287869 -23127373 + AluSg SINE Alu 1 307 -3 11085 178 23 16 chr6 159287869 159288450 -23126792 - L1MA4A LINE L1 -2543 3603 3027 24 0 0 0 chr6 159288470 159288494 -23126748 + AT_rich Low_complexity Low_complexity 1 24 0 6378 155 20 14 chr6 159288494 159288874 -23126368 - L1PB1 LINE L1 -1 6150 5774 2180 111 0 49 chr6 159288874 159289062 -23126180 - AluSx SINE Alu -3 309 142 2422 72 0 0 chr6 159289062 159289352 -23125890 - AluY SINE Alu -21 290 1 2180 111 0 49 chr6 159289352 159289488 -23125754 - AluSx SINE Alu -170 142 1 6378 155 20 14 chr6 159289488 159290542 -23124700 - L1PB1 LINE L1 -377 5774 4698 1940 129 24 3 chr6 159290542 159290837 -23124405 + AluSp SINE Alu 1 301 -12 6378 155 20 14 chr6 159290837 159291537 -23123705 - L1PB1 LINE L1 -1453 4698 4004 1258 140 0 0 chr6 159291567 159291773 -23123469 - AluSg/x SINE Alu 0 311 106 450 146 29 87 chr6 159291788 159291891 -23123351 + AluJb SINE Alu 210 306 -6 2110 131 0 0 chr6 159292080 159292362 -23122880 - AluSx SINE Alu -19 293 12 25 0 0 0 chr6 159292520 159292545 -23122697 + AT_rich Low_complexity Low_complexity 1 25 0 3861 274 133 5 chr6 159292910 159294087 -23121155 + L1M2 LINE L1 1 1328 -5521 2748 56 74 8 chr6 159294086 159294477 -23120765 + L1PBa LINE L1 2229 2645 -4218 * 2729 121 3 0 chr6 159294478 159294858 -23120384 + HUERS-P3 LTR ERV1 4562 4942 -3977 361 146 0 0 chr6 159294878 159294933 -23120309 + L1PBa LINE L1 835 889 -5974 11442 127 14 11 chr6 159295016 159295184 -23120058 + HUERS-P3 LTR ERV1 4954 5120 -3799 2433 80 7 0 chr6 159295184 159295483 -23119759 - AluSq SINE Alu -12 301 1 11442 127 14 11 chr6 159295483 159296982 -23118260 + HUERS-P3 LTR ERV1 5120 6625 -2294 2462 163 5 0 chr6 159296975 159297362 -23117880 + HUERS-P3 LTR ERV1 6797 7185 -1734 * 2226 91 0 44 chr6 159297362 159297680 -23117562 - AluSx SINE Alu -8 304 1 1175 92 0 0 chr6 159297704 159297857 -23117385 + AluSg/x SINE Alu 145 297 -13 1175 256 121 22 chr6 159297875 159298355 -23116887 - L2 LINE L2 0 3313 2772 2482 53 0 3 chr6 159298355 159298658 -23116584 + AluY SINE Alu 2 303 -8 1175 256 121 22 chr6 159298658 159298693 -23116549 - L2 LINE L2 -541 2772 2742 1895 96 19 81 chr6 159298781 159299104 -23116138 + AluJb SINE Alu 1 303 -9 331 319 35 103 chr6 159300849 159301197 -23114045 + L2 LINE L2 2943 3266 -6 590 179 140 28 chr6 159301219 159301398 -23113844 - MLT1K LTR MaLR 0 588 390 399 229 186 33 chr6 159301678 159301888 -23113354 - L1MC5 LINE L1 -30 7931 7690 200 333 0 0 chr6 159301937 159302021 -23113221 + A-rich Low_complexity Low_complexity 1 84 0 717 217 108 50 chr6 159302030 159302473 -23112769 - L1MC5 LINE L1 -286 7675 7226 293 116 0 0 chr6 159302524 159302567 -23112675 - L1MC5 LINE L1 -729 7232 7190 268 360 144 0 chr6 159303103 159303228 -23112014 + L2 LINE L2 3124 3266 -6 2102 106 7 14 chr6 159303550 159303863 -23111379 - AluSx SINE Alu 0 311 1 366 23 0 0 chr6 159304235 159304278 -23110964 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 391 225 93 20 chr6 159304806 159304957 -23110285 - L1ME4a LINE L1 -1 6120 5959 2100 116 0 3 chr6 159304966 159305258 -23109984 - AluSg SINE Alu -19 291 1 2173 105 3 0 chr6 159305429 159305745 -23109497 - AluSx SINE Alu 0 317 1 12637 114 18 116 chr6 159305746 159305918 -23109324 - Tigger1 DNA MER2_type -187 2231 2044 1526 186 21 14 chr6 159305918 159306208 -23109034 + AluJb SINE Alu 6 297 -15 12637 114 18 116 chr6 159306208 159306446 -23108796 - Tigger1 DNA MER2_type -374 2044 1784 2169 121 7 0 chr6 159306446 159306751 -23108491 + AluSx SINE Alu 1 307 -5 12637 114 18 116 chr6 159306751 159307110 -23108132 - Tigger1 DNA MER2_type -634 1784 1391 535 126 243 19 chr6 159307110 159307213 -23108029 - FLAM_A SINE Alu -6 136 11 12637 114 18 116 chr6 159307213 159307315 -23107927 - Tigger1 DNA MER2_type -1027 1391 1281 1894 136 13 33 chr6 159307315 159307616 -23107626 - AluSx SINE Alu -17 295 1 12637 114 18 116 chr6 159307616 159307871 -23107371 - Tigger1 DNA MER2_type -1137 1281 1003 2624 40 3 0 chr6 159307871 159308167 -23107075 - AluY SINE Alu -14 297 1 12637 114 18 116 chr6 159308167 159308448 -23106794 - Tigger1 DNA MER2_type -1415 1003 696 2366 96 0 7 chr6 159308448 159308749 -23106493 - AluSg SINE Alu -11 299 1 12637 114 18 116 chr6 159308749 159309682 -23105560 - Tigger1 DNA MER2_type -1722 696 24 2367 100 0 0 chr6 159310219 159310518 -23104724 - AluY SINE Alu -12 299 1 1971 146 7 0 chr6 159311423 159311718 -23103524 - AluSx SINE Alu -15 297 1 501 154 13 0 chr6 159311829 159311907 -23103335 - AluJ/FRAM SINE Alu -20 292 214 1143 189 0 18 chr6 159312755 159312977 -23102265 - AluJo SINE Alu -8 304 87 463 262 49 70 chr6 159313035 159313279 -23101963 + HAL1b LINE L1 219 457 -891 866 214 45 114 chr6 159313298 159313625 -23101617 - L1MC4 LINE L1 0 8042 7743 2403 87 0 0 chr6 159313625 159313924 -23101318 + AluSg SINE Alu 1 299 -11 866 214 45 114 chr6 159313924 159313974 -23101268 - L1MC4 LINE L1 -299 7743 7691 1186 109 30 6 chr6 159314042 159314207 -23101035 - AluSq SINE Alu -11 302 134 2299 99 3 3 chr6 159314207 159314511 -23100731 - AluSx SINE Alu -8 304 1 1077 243 110 59 chr6 159314513 159314918 -23100324 - L1MC4 LINE L1 -507 7535 7101 2309 99 0 0 chr6 159314918 159315211 -23100031 - AluSg SINE Alu -14 296 4 1077 243 110 59 chr6 159315211 159315278 -23099964 - L1MC4 LINE L1 -941 7101 7039 2395 163 69 7 chr6 159315288 159315753 -23099489 - L1MC2 LINE L1 -11 6333 5840 209 268 0 0 chr6 159315757 159315798 -23099444 + polypyrimidine Low_complexity Low_complexity 5 45 0 2304 97 3 10 chr6 159315800 159316111 -23099131 - AluSc SINE Alu 0 309 1 1316 115 55 18 chr6 159316112 159316330 -23098912 - AluJb SINE Alu -2 310 85 1777 188 10 7 chr6 159316337 159316646 -23098596 - AluJo SINE Alu -2 310 1 2126 161 35 0 chr6 159316646 159317012 -23098230 - L1MC2 LINE L1 -513 5831 5453 1512 208 31 7 chr6 159317330 159317619 -23097623 - AluJo SINE Alu -16 296 1 382 227 120 84 chr6 159318110 159318219 -23097023 + MIR SINE MIR 28 132 -130 2075 128 24 0 chr6 159318219 159318516 -23096726 - AluSx SINE Alu -8 304 1 382 227 120 84 chr6 159318516 159318631 -23096611 + MIR SINE MIR 132 260 -2 207 292 0 0 chr6 159319094 159319142 -23096100 + (CATA)n Simple_repeat Simple_repeat 3 50 0 21 0 0 0 chr6 159319243 159319264 -23095978 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 159319300 159319335 -23095907 + AT_rich Low_complexity Low_complexity 1 35 0 2255 99 0 0 chr6 159319457 159319774 -23095468 - AluSg SINE Alu 0 317 1 2223 108 3 7 chr6 159320679 159320975 -23094267 - AluSx SINE Alu -17 295 1 215 357 19 51 chr6 159321060 159321217 -23094025 + MIR3 SINE MIR 16 167 -41 509 262 114 33 chr6 159321231 159321441 -23093801 - MIR SINE MIR 0 262 36 2143 143 0 0 chr6 159321873 159322181 -23093061 - AluSx SINE Alu -1 311 4 581 219 8 16 chr6 159322278 159322406 -23092836 - FLAM_A SINE Alu 0 142 16 313 300 144 25 chr6 159322406 159322683 -23092559 - L1 LINE L1 -945 5201 4892 2465 82 0 0 chr6 159322683 159322986 -23092256 + AluSc SINE Alu 1 303 -6 662 226 96 12 chr6 159323031 159323297 -23091945 - L1 LINE L1 -1242 4904 4616 908 224 71 74 chr6 159323764 159324103 -23091139 - MER46C DNA MER2_type 0 338 1 341 309 182 11 chr6 159324139 159324320 -23090922 + MIR SINE MIR 33 244 -18 368 224 39 90 chr6 159324613 159324769 -23090473 - L1MC4a LINE L1 -1829 5979 5832 196 265 84 36 chr6 159325559 159325642 -23089600 - MIR SINE MIR -94 168 82 1150 107 0 0 chr6 159326868 159327018 -23088224 - AluSg/x SINE Alu -20 290 141 435 83 17 0 chr6 159327853 159327913 -23087329 - U7 snRNA snRNA -1 62 2 192 196 0 59 chr6 159328101 159328152 -23087090 - L2 LINE L2 -11 3302 3255 190 236 69 62 chr6 159329257 159329401 -23085841 - L2 LINE L2 -92 3221 3077 810 109 0 95 chr6 159329583 159329730 -23085512 + AluJo/FLAM SINE Alu 1 133 -169 2394 82 0 10 chr6 159329732 159330036 -23085206 + AluSp SINE Alu 1 301 -12 225 0 0 0 chr6 159330079 159330104 -23085138 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr6 159330116 159330139 -23085103 + AT_rich Low_complexity Low_complexity 1 23 0 349 274 10 0 chr6 159330145 159330247 -23084995 + MER112 DNA MER1_type 156 258 -2 2025 124 0 0 chr6 159330248 159330523 -23084719 + AluSx SINE Alu 1 275 -37 321 288 110 36 chr6 159331188 159331407 -23083835 - L1ME4a LINE L1 -181 5940 5706 1508 127 4 22 chr6 159331515 159331743 -23083499 - AluSx SINE Alu -88 224 1 2411 75 0 19 chr6 159332044 159332352 -23082890 + AluSg SINE Alu 1 302 -8 801 280 127 37 chr6 159332451 159333225 -23082017 + L1MEd LINE L1 498 1383 -4887 1368 121 0 5 chr6 159333278 159333468 -23081774 + AluSp SINE Alu 107 295 -18 2142 106 14 0 chr6 159334175 159334459 -23080783 + AluSq SINE Alu 1 288 -25 192 77 0 0 chr6 159334462 159334488 -23080754 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2128 140 0 3 chr6 159334930 159335230 -23080012 - AluSq SINE Alu -14 299 1 2018 122 20 43 chr6 159335463 159335766 -23079476 + AluSx SINE Alu 1 296 -16 332 200 0 0 chr6 159337149 159337204 -23078038 - MLT1C LTR MaLR 0 467 413 669 171 0 0 chr6 159337219 159337324 -23077918 + AluJo SINE Alu 12 116 -196 2732 26 7 0 chr6 159337324 159337631 -23077611 + AluY SINE Alu 1 309 -2 25 51 0 0 chr6 159338664 159338703 -23076539 + AT_rich Low_complexity Low_complexity 1 39 0 1107 171 17 0 chr6 159338705 159338903 -23076339 + AluJo SINE Alu 105 305 0 1388 184 59 83 chr6 159338903 159339146 -23076096 - MLT1C LTR MaLR -64 403 172 2055 112 0 48 chr6 159339146 159339458 -23075784 + AluSq SINE Alu 3 299 -14 1388 184 59 83 chr6 159339458 159339622 -23075620 - MLT1C LTR MaLR -295 172 6 824 213 12 6 chr6 159339995 159340164 -23075078 - MIR SINE MIR -29 233 64 1498 169 75 0 chr6 159340351 159340629 -23074613 + AluJo SINE Alu 5 303 -9 511 253 68 35 chr6 159340647 159340924 -23074318 + L1MB3 LINE L1 5293 5588 -578 2157 94 61 0 chr6 159341423 159341700 -23073542 - AluSg SINE Alu -16 294 1 2161 109 0 30 chr6 159342563 159342865 -23072377 - AluSq SINE Alu -20 293 1 341 285 70 6 chr6 159342966 159343124 -23072118 + MIR SINE MIR 19 186 -76 2186 89 58 0 chr6 159343182 159343474 -23071768 + AluSg SINE Alu 1 309 -1 2069 142 14 0 chr6 159343618 159343913 -23071329 - AluJb SINE Alu -13 299 1 21 0 0 0 chr6 159343913 159343934 -23071308 + AT_rich Low_complexity Low_complexity 1 21 0 223 250 0 17 chr6 159344057 159344117 -23071125 + MIR SINE MIR 47 105 -103 750 218 0 0 chr6 159345959 159346101 -23069141 + L1MB3 LINE L1 5687 5828 -343 1331 155 0 14 chr6 159346102 159346321 -23068921 + AluJo SINE Alu 1 216 -96 1613 180 31 3 chr6 159346323 159346640 -23068602 + L1MB3 LINE L1 5858 6183 0 196 291 25 13 chr6 159347077 159347156 -23068086 + MIR SINE MIR 73 152 -110 185 241 195 11 chr6 159348143 159348230 -23067012 + MIR SINE MIR 65 167 -95 2098 128 7 3 chr6 159348279 159348576 -23066666 + AluSx SINE Alu 1 298 -14 249 336 9 9 chr6 159348599 159348709 -23066533 + CT-rich Low_complexity Low_complexity 1 110 0 2038 96 103 0 chr6 159349188 159349470 -23065772 - AluSp SINE Alu -2 311 1 1267 128 39 0 chr6 159349471 159349675 -23065567 - L1PA15 LINE L1 -180 5985 5774 367 314 112 8 chr6 159349877 159350119 -23065123 - L2 LINE L2 -727 2587 2321 785 168 0 15 chr6 159350119 159350250 -23064992 + FLAM_A SINE Alu 4 132 -1 1871 161 3 25 chr6 159350556 159350873 -23064369 - AluJo SINE Alu 0 312 3 2408 181 17 31 chr6 159351334 159351767 -23063475 - Charlie1b DNA MER1_type -2250 511 85 2295 104 3 0 chr6 159351767 159352065 -23063177 - AluSg SINE Alu -11 299 1 2408 181 17 31 chr6 159352065 159352149 -23063093 - Charlie1b DNA MER1_type -2676 85 1 182 330 84 28 chr6 159352466 159352681 -23062561 - L2 LINE L2 -1324 1990 1764 276 30 0 0 chr6 159352973 159353006 -23062236 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 274 309 24 0 chr6 159353007 159353091 -23062151 - L2 LINE L2 -7 3306 3221 1821 201 0 0 chr6 159353118 159353427 -23061815 - AluJo SINE Alu -3 309 1 2191 123 3 0 chr6 159353436 159353728 -23061514 - AluSg SINE Alu -17 293 1 321 307 29 50 chr6 159353729 159353869 -23061373 + L1MC4a LINE L1 5857 5993 -1815 22 35 0 0 chr6 159354013 159354042 -23061200 + AT_rich Low_complexity Low_complexity 1 29 0 2295 86 10 0 chr6 159354225 159354517 -23060725 - AluSq SINE Alu -18 295 1 1310 143 239 0 chr6 159354722 159355015 -23060227 - MLT1B LTR MaLR -21 369 7 599 256 142 9 chr6 159355791 159356010 -23059232 + MIR SINE MIR 14 261 -1 192 284 137 0 chr6 159356080 159356175 -23059067 + MIR SINE MIR 39 146 -62 209 270 180 36 chr6 159357076 159357187 -23058055 + MIR3 SINE MIR 82 208 0 516 188 99 0 chr6 159358200 159358301 -23056941 - MLT1D LTR MaLR -146 359 249 704 230 29 29 chr6 159359021 159359230 -23056012 + MER3 DNA MER1_type 1 209 0 282 291 173 0 chr6 159359232 159359342 -23055900 + MIR3 SINE MIR 59 187 -21 1078 163 0 0 chr6 159359395 159359567 -23055675 - AluSc SINE Alu -6 303 132 2146 123 10 3 chr6 159359567 159359875 -23055367 - AluSx SINE Alu -2 310 1 248 203 31 0 chr6 159359911 159359975 -23055267 - MIR SINE MIR -141 121 56 2503 57 0 3 chr6 159360479 159360777 -23054465 - AluY SINE Alu -14 297 1 2433 102 3 0 chr6 159361676 159361981 -23053261 + AluSp SINE Alu 5 310 -3 372 242 142 0 chr6 159362264 159362384 -23052858 + MIR SINE MIR 116 252 -10 1836 184 0 10 chr6 159362399 159362698 -23052544 + AluJb SINE Alu 1 296 -16 2292 92 0 0 chr6 159363017 159363357 -23051885 - AluSg SINE Alu 0 340 1 2194 112 0 3 chr6 159364186 159364480 -23050762 - AluY SINE Alu -18 293 1 2394 104 0 0 chr6 159364570 159364877 -23050365 - AluSx SINE Alu -1 311 5 264 308 98 72 chr6 159365240 159365516 -23049726 - L2 LINE L2 0 3272 2990 843 316 101 31 chr6 159365698 159366251 -23048991 + L2 LINE L2 2007 2598 -716 2214 89 0 0 chr6 159366253 159366524 -23048718 - AluSg SINE Alu -39 271 1 217 311 67 49 chr6 159366525 159366689 -23048553 + L2 LINE L2 2687 2853 -461 1995 178 32 28 chr6 159366885 159367432 -23047810 - MLT2A2 LTR ERVL -1 553 1 2015 150 0 0 chr6 159367549 159367861 -23047381 - AluSx SINE Alu 0 312 1 439 214 47 135 chr6 159368163 159368378 -23046864 + L2 LINE L2 3118 3313 0 2335 118 0 0 chr6 159368586 159368892 -23046350 - AluSc SINE Alu -3 306 1 1276 183 8 42 chr6 159368997 159369098 -23046144 - AluJb SINE Alu -79 233 130 2195 123 17 0 chr6 159369098 159369400 -23045842 - AluSq SINE Alu -6 307 1 1276 183 8 42 chr6 159369400 159369539 -23045703 - AluJb SINE Alu -182 130 1 878 112 309 0 chr6 159369594 159369772 -23045470 - MER46A DNA MER2_type -3 233 1 1168 195 91 0 chr6 159369797 159370028 -23045214 - Tigger3(Golem) DNA MER2_type -2776 253 2 978 264 57 53 chr6 159370755 159371342 -23043900 + L1ME3A LINE L1 5069 5656 -506 271 295 0 0 chr6 159371409 159371487 -23043755 + L1ME3A LINE L1 5854 5931 -239 2067 160 3 0 chr6 159371522 159371860 -23043382 + AluJb SINE Alu 5 343 0 237 392 8 0 chr6 159372136 159372256 -23042986 + L3 LINE CR1 1261 1381 -196 27 0 0 0 chr6 159373315 159373342 -23041900 + GC_rich Low_complexity Low_complexity 1 27 0 2208 106 3 0 chr6 159373660 159373981 -23041261 - AluY SINE Alu 0 322 1 999 170 13 0 chr6 159374038 159374197 -23041045 - FRAM SINE Alu -15 161 1 282 202 191 11 chr6 159374568 159374662 -23040580 + L2 LINE L2 3160 3270 -2 353 311 44 28 chr6 159374764 159374944 -23040298 + MIR SINE MIR 6 188 -74 552 195 47 23 chr6 159376065 159376193 -23039049 - FLAM_A SINE Alu -2 131 1 332 244 100 69 chr6 159376290 159376312 -23038930 - MER5A DNA MER1_type -22 167 147 1806 135 0 12 chr6 159376312 159376571 -23038671 - AluSx SINE Alu -17 295 40 332 244 100 69 chr6 159376571 159376640 -23038602 - MER5A DNA MER1_type -42 147 82 1736 169 3 52 chr6 159376640 159376948 -23038294 - AluJb SINE Alu -17 295 3 332 244 100 69 chr6 159376948 159377015 -23038227 - MER5A DNA MER1_type -107 82 3 288 203 34 0 chr6 159379538 159379597 -23035645 - MER112 DNA MER1_type -14 246 186 353 139 20 20 chr6 159379972 159380073 -23035169 + (CA)n Simple_repeat Simple_repeat 1 101 0 831 165 0 85 chr6 159380170 159380214 -23035028 - AluJo/FRAM SINE Alu -1 311 265 2436 91 0 3 chr6 159380214 159380511 -23034731 + AluSx SINE Alu 1 296 -16 831 165 0 85 chr6 159380511 159380630 -23034612 - AluJo/FRAM SINE Alu -47 265 162 1086 135 9 40 chr6 159381407 159381622 -23033620 - AluJb SINE Alu -34 278 1 2453 73 6 16 chr6 159381629 159381943 -23033299 - AluY SINE Alu 0 311 1 1973 113 41 34 chr6 159382413 159382706 -23032536 + AluSg SINE Alu 1 295 -15 770 227 29 6 chr6 159383417 159383589 -23031653 - MER45A DNA AcHobo 0 178 3 504 252 71 67 chr6 159384178 159384388 -23030854 - MLT1K LTR MaLR -324 264 54 298 128 45 60 chr6 159384993 159385126 -23030116 + (ACTG)n Simple_repeat Simple_repeat 2 132 0 268 196 68 0 chr6 159385211 159385359 -23029883 + (ACTG)n Simple_repeat Simple_repeat 3 160 0 425 152 59 32 chr6 159385381 159385823 -23029419 + (ACTG)n Simple_repeat Simple_repeat 1 454 0 516 292 193 23 chr6 159386590 159386891 -23028351 - MLT1I LTR MaLR -4 405 54 529 280 133 45 chr6 159386984 159387128 -23028114 + L1ME4a LINE L1 5761 5891 -230 2361 88 0 0 chr6 159387128 159387474 -23027768 + AluSp SINE Alu 1 346 0 529 280 133 45 chr6 159387474 159387660 -23027582 + L1ME4a LINE L1 5891 6121 0 219 219 302 10 chr6 159389076 159389172 -23026070 - L2 LINE L2 0 3313 3190 292 250 114 0 chr6 159389234 159389322 -23025920 - MIR SINE MIR -78 184 87 2328 110 3 0 chr6 159389407 159389708 -23025534 + AluSp SINE Alu 1 302 -11 8583 176 7 27 chr6 159390116 159391100 -23024142 + L1P5 LINE L1 3420 4422 -1732 2179 119 6 3 chr6 159391100 159391412 -23023830 + AluSp SINE Alu 1 313 0 8583 176 7 27 chr6 159391412 159392842 -23022400 + L1P5 LINE L1 4422 5784 -370 1079 82 0 88 chr6 159392863 159393022 -23022220 + AluSx SINE Alu 9 153 -159 472 224 28 0 chr6 159393461 159393568 -23021674 - MER81 DNA DNA -3 111 2 2318 88 12 41 chr6 159394260 159394580 -23020662 + AluSx SINE Alu 1 311 -1 2328 82 4 0 chr6 159394966 159395245 -23019997 - AluSp SINE Alu -19 294 15 976 130 0 0 chr6 159395249 159395387 -23019855 - FLAM_C SINE Alu -5 138 1 2076 149 49 5 chr6 159395387 159395867 -23019375 - L1PA8A LINE L1 -157 5974 5433 263 325 124 18 chr6 159395998 159396167 -23019075 - MIR SINE MIR -4 258 72 607 319 42 12 chr6 159396266 159396507 -23018735 + MIR SINE MIR 14 261 -1 2198 106 0 0 chr6 159396636 159396952 -23018290 - AluSx SINE Alu 0 316 1 222 184 0 0 chr6 159397281 159397319 -23017923 + MIR3 SINE MIR 162 199 -9 1515 150 67 8 chr6 159398112 159398365 -23016877 - AluSx SINE Alu -10 302 35 419 267 59 45 chr6 159398410 159398670 -23016572 - L1M4 LINE L1 -1658 4488 3840 2144 81 11 11 chr6 159398718 159399001 -23016241 + AluSq SINE Alu 1 283 -30 314 315 20 41 chr6 159399370 159399516 -23015726 - L1M LINE L1 -778 5400 5258 187 300 192 8 chr6 159400354 159400484 -23014758 - MIR SINE MIR -18 244 91 1025 312 86 10 chr6 159400883 159401508 -23013734 + HERV16 LTR ERVL 483 1155 -3841 776 167 21 7 chr6 159401512 159401656 -23013586 + FRAM SINE Alu 10 155 -21 400 275 90 0 chr6 159401660 159401860 -23013382 + HERV16 LTR ERVL 1155 1372 -3624 2271 325 36 37 chr6 159401971 159404272 -23010970 + HERV16 LTR ERVL 1599 3976 -1788 273 294 28 0 chr6 159404420 159404529 -23010713 + HERV16 LTR ERVL 4162 4273 -1491 332 283 96 0 chr6 159404736 159404913 -23010329 + LTR16B LTR ERVL 116 309 -155 2147 110 3 0 chr6 159405080 159405388 -23009854 + AluSq SINE Alu 1 309 0 468 0 0 0 chr6 159406316 159406368 -23008874 + (GA)n Simple_repeat Simple_repeat 1 52 0 1508 166 41 27 chr6 159406729 159407024 -23008218 - AluJo SINE Alu -10 302 4 298 203 38 25 chr6 159407207 159407286 -23007956 + L2 LINE L2 3208 3287 -26 1656 166 3 11 chr6 159407540 159407849 -23007393 + AluJo SINE Alu 1 307 0 1127 161 10 0 chr6 159407856 159408061 -23007181 - MER2 DNA MER2_type -138 207 1 1153 154 0 82 chr6 159408777 159409010 -23006232 - AluJb SINE Alu -15 297 84 734 210 40 0 chr6 159409011 159409187 -23006055 - L1ME LINE L1 -343 5823 5641 2150 227 103 15 chr6 159409517 159410117 -23005125 + MER82 DNA MER2_type 1 653 0 302 219 24 12 chr6 159410277 159410359 -23004883 - L2 LINE L2 -12 3301 3219 2205 120 3 0 chr6 159410634 159410935 -23004307 + AluSx SINE Alu 1 302 -10 645 180 57 0 chr6 159411986 159412108 -23003134 + FLAM_A SINE Alu 2 130 -3 14130 113 39 42 chr6 159412182 159414256 -23000986 - Tigger1 DNA MER2_type 0 2418 352 2191 102 0 3 chr6 159414256 159414550 -23000692 + AluSc SINE Alu 1 293 -16 14130 113 39 42 chr6 159414550 159414901 -23000341 - Tigger1 DNA MER2_type -2066 352 1 195 42 0 0 chr6 159415395 159415419 -22999823 + (TA)n Simple_repeat Simple_repeat 2 25 0 681 206 23 15 chr6 159415424 159415555 -22999687 + FLAM_A SINE Alu 1 132 -1 219 257 76 57 chr6 159416176 159416281 -22998961 - MIR SINE MIR -75 187 81 1704 133 19 11 chr6 159416295 159416558 -22998684 + AluSx SINE Alu 19 283 -29 234 0 0 0 chr6 159416577 159416603 -22998639 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2017 131 7 0 chr6 159416938 159417247 -22997995 - AluSx SINE Alu 0 311 1 22 35 0 0 chr6 159418349 159418378 -22996864 + AT_rich Low_complexity Low_complexity 1 29 0 181 269 0 58 chr6 159419072 159419124 -22996118 - MER5A DNA MER1_type -140 49 1 381 293 13 93 chr6 159420963 159421113 -22994129 + MIR3 SINE MIR 10 147 -61 417 150 80 20 chr6 159422467 159422567 -22992675 - L1MC5 LINE L1 -50 7911 7806 21 36 0 0 chr6 159422868 159422896 -22992346 + AT_rich Low_complexity Low_complexity 1 28 0 2185 86 7 0 chr6 159422936 159423255 -22991987 + AluSp SINE Alu 1 321 0 412 197 0 0 chr6 159423371 159423442 -22991800 - MER58A DNA MER1_type -35 72 2 5642 177 55 6 chr6 159423907 159425977 -22989265 - L1MA9 LINE L1 -6 6306 4131 2027 164 37 74 chr6 159425977 159426411 -22988831 + MSTB LTR MaLR 1 418 -8 656 150 109 0 chr6 159426419 159426566 -22988676 - L1MA9 LINE L1 -2012 4134 3972 381 43 0 0 chr6 159426566 159426613 -22988629 + (TG)n Simple_repeat Simple_repeat 2 48 0 363 226 71 0 chr6 159426613 159426697 -22988545 + L1MC4 LINE L1 6614 6703 -1339 2206 101 3 3 chr6 159426704 159427000 -22988242 - AluSp SINE Alu -17 296 1 4866 197 104 48 chr6 159427000 159428669 -22986573 - L1MA9 LINE L1 -2185 3961 2200 454 226 61 6 chr6 159429761 159429925 -22985317 - L1M4c LINE L1 -3933 2451 2279 246 211 0 58 chr6 159429966 159430070 -22985172 - L1M4c LINE L1 -4225 2159 2062 21 36 0 0 chr6 159431382 159431410 -22983832 + AT_rich Low_complexity Low_complexity 1 28 0 2170 118 3 0 chr6 159432496 159432793 -22982449 - AluSq SINE Alu -15 298 1 444 227 128 0 chr6 159433456 159433597 -22981645 + L1MEd LINE L1 1335 1493 -5037 2139 106 0 3 chr6 159433634 159433917 -22981325 + AluSx SINE Alu 1 282 -30 248 259 0 0 chr6 159433949 159434030 -22981212 + L1MEd LINE L1 1424 1504 -5038 367 327 91 0 chr6 159434566 159434731 -22980511 + L1MEd LINE L1 2471 2650 -3890 317 253 30 50 chr6 159434765 159434864 -22980378 - L2 LINE L2 -35 3237 3141 1016 214 10 0 chr6 159434914 159435110 -22980132 + MER58A DNA MER1_type 5 202 -22 214 246 211 0 chr6 159435110 159435167 -22980075 - L2 LINE L2 -498 2816 2748 1778 223 83 27 chr6 159435237 159436079 -22979163 + L1MCc LINE L1 1095 2005 -4887 390 323 104 52 chr6 159437168 159437496 -22977746 + HAL1 LINE L1 47 391 -2116 1643 147 0 4 chr6 159437560 159437792 -22977450 + AluSx SINE Alu 50 280 -32 1185 257 117 66 chr6 159437831 159438112 -22977130 + HAL1 LINE L1 872 1137 -1370 1559 164 18 14 chr6 159438112 159438393 -22976849 + AluJb SINE Alu 1 282 -30 1185 257 117 66 chr6 159438393 159438959 -22976283 + HAL1 LINE L1 1137 1762 -745 191 361 16 16 chr6 159439767 159439828 -22975414 + L2 LINE L2 3150 3210 -62 2437 89 3 0 chr6 159440287 159440589 -22974653 - AluSp SINE Alu -10 303 1 2328 97 0 3 chr6 159440699 159440998 -22974244 + AluSc SINE Alu 1 298 -11 255 151 50 101 chr6 159441165 159441284 -22973958 + L1M1 LINE L1 5314 5426 -2382 387 269 8 8 chr6 159441522 159441641 -22973601 + MLT1I LTR MaLR 3 121 -288 468 233 132 13 chr6 159441718 159441877 -22973365 + MLT1I LTR MaLR 232 409 0 549 219 120 24 chr6 159441877 159442109 -22973133 + L1M1 LINE L1 5586 5832 -473 1080 188 81 21 chr6 159442281 159443667 -22971575 + L1MB7 LINE L1 4582 6175 -9 416 314 63 39 chr6 159444115 159444322 -22970920 + L3 LINE CR1 1353 1564 -13 704 206 0 0 chr6 159444439 159444565 -22970677 - FLAM_A SINE Alu -9 133 8 34 55 0 0 chr6 159444957 159445012 -22970230 + AT_rich Low_complexity Low_complexity 1 55 0 2114 124 7 0 chr6 159446070 159446360 -22968882 + AluSx SINE Alu 1 292 -20 2221 122 0 10 chr6 159446770 159447081 -22968161 - AluSc SINE Alu -1 308 1 317 243 142 74 chr6 159447289 159447342 -22967900 + MIR SINE MIR 1 49 -213 2246 95 7 0 chr6 159447342 159447637 -22967605 - AluSg SINE Alu -13 297 1 317 243 142 74 chr6 159447637 159447731 -22967511 + MIR SINE MIR 49 158 -104 * 864 299 147 9 chr6 159447729 159448077 -22967165 - L2 LINE L2 -367 2947 2552 1938 148 10 3 chr6 159448081 159448386 -22966856 + AluJo SINE Alu 1 307 -5 786 171 79 7 chr6 159448847 159448999 -22966243 - FRAM SINE Alu -21 155 1 1649 191 3 3 chr6 159449713 159449995 -22965247 - AluJo SINE Alu -30 282 1 36 40 0 0 chr6 159450242 159450292 -22964950 + AT_rich Low_complexity Low_complexity 1 50 0 2241 37 44 7 chr6 159452610 159452882 -22962360 + AluY SINE Alu 17 298 -13 213 39 0 0 chr6 159453385 159453411 -22961831 + (CAA)n Simple_repeat Simple_repeat 2 27 0 26 0 0 0 chr6 159453785 159453811 -22961431 + AT_rich Low_complexity Low_complexity 1 26 0 2280 201 105 91 chr6 159454659 159455431 -22959811 - L1MC5 LINE L1 -35 7926 7129 1502 154 33 43 chr6 159455431 159455730 -22959512 + AluJo SINE Alu 1 296 -16 2280 201 105 91 chr6 159455730 159456154 -22959088 - L1MC5 LINE L1 -832 7129 6713 332 267 186 19 chr6 159457461 159457768 -22957474 - L1MC4a LINE L1 -1639 6169 5812 429 330 113 26 chr6 159458220 159458450 -22956792 - MIR SINE MIR -8 254 5 2059 153 0 0 chr6 159458862 159459169 -22956073 - AluSx SINE Alu -5 307 1 24 0 0 0 chr6 159459316 159459340 -22955902 + AT_rich Low_complexity Low_complexity 1 24 0 381 268 76 45 chr6 159459359 159459516 -22955726 - MIR3 SINE MIR -28 180 19 288 308 165 0 chr6 159459598 159459731 -22955511 - MIR SINE MIR -44 218 64 506 176 92 34 chr6 159460600 159460719 -22954523 - MER5B DNA MER1_type -50 128 3 315 0 0 0 chr6 159461272 159461307 -22953935 + (CA)n Simple_repeat Simple_repeat 2 36 0 2618 277 123 38 chr6 159461438 159462913 -22952329 + L2 LINE L2 1712 3313 0 2450 228 129 48 chr6 159463204 159464580 -22950662 + L1ME LINE L1 6 1461 -4619 191 267 162 38 chr6 159465283 159465388 -22949854 - L2 LINE L2 0 3272 3155 1112 334 55 46 chr6 159465579 159466247 -22948995 - L2 LINE L2 -455 2859 2186 24 91 0 0 chr6 159466257 159466323 -22948919 + AT_rich Low_complexity Low_complexity 1 66 0 288 300 31 23 chr6 159466470 159466600 -22948642 - HAL1 LINE L1 -21 2486 2356 438 151 55 0 chr6 159466609 159466682 -22948560 + MSTA LTR MaLR 53 129 -299 305 277 28 73 chr6 159466683 159466860 -22948382 - HAL1 LINE L1 -240 2267 2099 212 188 104 0 chr6 159466864 159466912 -22948330 + MIR3 SINE MIR 140 192 -16 2230 167 54 2 chr6 159467359 159467766 -22947476 + MSTA LTR MaLR 1 428 0 8270 165 62 7 chr6 159467766 159469331 -22945911 + MSTA-int LTR MaLR 1 1651 0 2187 170 64 7 chr6 159469331 159469736 -22945506 + MSTA LTR MaLR 1 428 0 1258 286 71 69 chr6 159470061 159471248 -22943994 + L1MEd LINE L1 3 1191 -4928 297 0 0 0 chr6 159471279 159471312 -22943930 + (CA)n Simple_repeat Simple_repeat 2 34 0 333 294 52 19 chr6 159471324 159471497 -22943745 + L1MEd LINE L1 1292 1475 -4835 1437 159 113 12 chr6 159471497 159471824 -22943418 + MER46B DNA MER2_type 1 235 -1 333 294 52 19 chr6 159471824 159471861 -22943381 + L1MEd LINE L1 1475 1509 -4801 381 213 32 97 chr6 159471867 159471952 -22943290 + L1ME LINE L1 5604 5676 -445 2345 99 0 3 chr6 159471952 159472254 -22942988 + AluSx SINE Alu 1 301 -11 381 213 32 97 chr6 159472254 159472323 -22942919 + L1ME LINE L1 5676 5748 -373 333 0 0 0 chr6 159472485 159472522 -22942720 + (TG)n Simple_repeat Simple_repeat 2 38 0 2242 112 0 0 chr6 159472522 159472817 -22942425 - AluSg SINE Alu -15 295 1 24 53 0 0 chr6 159472845 159472883 -22942359 + AT_rich Low_complexity Low_complexity 1 38 0 1815 194 49 0 chr6 159473222 159473568 -22941674 + MLT1A1 LTR MaLR 1 363 -2 308 232 192 8 chr6 159474002 159474127 -22941115 + MER103 DNA DNA 14 161 -5 2165 114 0 3 chr6 159474268 159474566 -22940676 - AluSq SINE Alu -13 300 4 22 0 0 0 chr6 159474834 159474856 -22940386 + AT_rich Low_complexity Low_complexity 1 22 0 614 285 121 43 chr6 159474921 159475244 -22939998 + L1MC4a LINE L1 5554 5901 -1907 24 91 0 0 chr6 159475403 159475469 -22939773 + AT_rich Low_complexity Low_complexity 1 66 0 229 299 0 0 chr6 159476019 159476086 -22939156 + (TA)n Simple_repeat Simple_repeat 1 67 0 300 317 84 0 chr6 159476145 159476312 -22938930 - L1ME LINE L1 -294 5827 5647 212 238 0 0 chr6 159476456 159476498 -22938744 - MER5B DNA MER1_type -1 177 136 257 67 0 44 chr6 159476679 159476724 -22938518 + (CAG)n Simple_repeat Simple_repeat 2 44 0 195 243 0 165 chr6 159476785 159476888 -22938354 + MER5B DNA MER1_type 90 175 -3 250 364 27 18 chr6 159477057 159477167 -22938075 + MER5A DNA MER1_type 15 125 -64 751 241 89 34 chr6 159478178 159478414 -22936828 + MIR SINE MIR 1 249 -13 1121 125 54 0 chr6 159479167 159479335 -22935907 + FRAM SINE Alu 1 170 -6 2239 96 0 0 chr6 159479721 159480003 -22935239 + AluSx SINE Alu 1 282 -30 207 88 0 0 chr6 159480003 159480037 -22935205 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 247 224 184 0 chr6 159480048 159480124 -22935118 + L2 LINE L2 3213 3302 -11 2162 117 0 3 chr6 159480515 159480814 -22934428 - AluSg SINE Alu -12 298 1 2251 85 0 20 chr6 159480966 159481271 -22933971 - AluSq SINE Alu -14 299 1 234 91 0 0 chr6 159481505 159481538 -22933704 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 1696 175 20 7 chr6 159481545 159481842 -22933400 - AluJo SINE Alu -11 301 1 29 90 0 0 chr6 159482162 159482240 -22933002 + AT_rich Low_complexity Low_complexity 1 78 0 2521 82 0 0 chr6 159483199 159483504 -22931738 + AluSq SINE Alu 1 305 -8 217 211 0 0 chr6 159483667 159483705 -22931537 + (CGTG)n Simple_repeat Simple_repeat 4 41 0 204 214 0 0 chr6 159483796 159483852 -22931390 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 251 247 25 12 chr6 159483937 159484018 -22931224 + L1MC/D LINE L1 5728 5809 -1999 287 229 0 60 chr6 159485037 159485120 -22930122 - MIR SINE MIR -23 239 162 245 254 30 0 chr6 159485111 159485178 -22930064 + MIR SINE MIR 174 242 -20 * 1342 128 0 15 chr6 159486466 159486670 -22928572 - AluSg/x SINE Alu -15 297 97 21 0 0 0 chr6 159487892 159487913 -22927329 + AT_rich Low_complexity Low_complexity 1 21 0 273 281 105 9 chr6 159488378 159488492 -22926750 + MIR SINE MIR 128 252 -10 22 35 0 0 chr6 159488704 159488733 -22926509 + AT_rich Low_complexity Low_complexity 1 29 0 339 256 35 12 chr6 159489839 159489925 -22925317 - MIR3 SINE MIR -8 200 113 1871 97 67 15 chr6 159490064 159490367 -22924875 + AluSx SINE Alu 1 317 0 2159 107 3 19 chr6 159490559 159490867 -22924375 - AluSc SINE Alu -4 305 3 212 125 0 0 chr6 159490970 159491002 -22924240 + L2 LINE L2 3209 3240 -32 1203 219 56 22 chr6 159491604 159491928 -22923314 + MER46C DNA MER2_type 4 338 0 561 220 23 30 chr6 159492544 159492676 -22922566 - Charlie4 DNA MER1_type -23 1938 1808 * 1343 201 68 29 chr6 159492664 159493078 -22922164 - Charlie4a DNA MER1_type -65 443 14 285 170 19 0 chr6 159493766 159493819 -22921423 - L2 LINE L2 -4 3309 3256 249 226 0 0 chr6 159493836 159493889 -22921353 - MIR SINE MIR -119 89 37 1612 185 0 24 chr6 159494279 159494571 -22920671 + AluJo SINE Alu 1 285 -27 308 156 44 0 chr6 159494571 159494661 -22920581 + (TA)n Simple_repeat Simple_repeat 1 94 0 190 265 241 18 chr6 159494984 159495154 -22920088 + L2 LINE L2 2326 2533 -781 1426 194 18 7 chr6 159495257 159495535 -22919707 - AluJo SINE Alu -11 301 21 25 51 0 0 chr6 159495835 159495874 -22919368 + AT_rich Low_complexity Low_complexity 1 39 0 327 291 0 12 chr6 159495900 159495986 -22919256 - MIR SINE MIR -23 239 155 399 56 0 0 chr6 159496190 159496244 -22918998 + (CA)n Simple_repeat Simple_repeat 2 55 0 231 173 77 19 chr6 159496823 159496875 -22918367 - L2 LINE L2 -1 3271 3217 1402 271 60 17 chr6 159497658 159498127 -22917115 + L2 LINE L2 2224 2712 -602 3085 207 115 16 chr6 159498145 159499082 -22916160 + L1MD2 LINE L1 3875 4904 -1242 3044 181 80 21 chr6 159499085 159500055 -22915187 + L1MD2 LINE L1 5063 6090 -76 465 296 71 43 chr6 159499741 159500093 -22915149 + L1MB3 LINE L1 5772 6133 -50 * 542 305 89 32 chr6 159500128 159500374 -22914868 + L2 LINE L2 2702 2961 -353 257 299 75 60 chr6 159500955 159501089 -22914153 + L2 LINE L2 2917 3052 -220 205 239 163 54 chr6 159501242 159501334 -22913908 + L2 LINE L2 3169 3270 -2 2029 123 3 0 chr6 159501361 159501653 -22913589 + AluY SINE Alu 1 293 -18 654 180 16 23 chr6 159502487 159502615 -22912627 + FLAM_A SINE Alu 1 127 -6 1949 106 4 4 chr6 159503147 159503412 -22911830 + AluSq SINE Alu 44 308 -5 299 82 0 0 chr6 159503662 159503711 -22911531 - Alu SINE Alu -1 301 253 1676 203 3 10 chr6 159503911 159504217 -22911025 + AluJb SINE Alu 1 304 -8 379 283 46 53 chr6 159504671 159504823 -22910419 - MIR SINE MIR -93 169 19 993 193 0 12 chr6 159504938 159505109 -22910133 + AluJo SINE Alu 85 253 -59 28 29 0 0 chr6 159505529 159505564 -22909678 + AT_rich Low_complexity Low_complexity 1 35 0 249 279 0 0 chr6 159507142 159507210 -22908032 - MIR SINE MIR -3 259 192 259 231 22 102 chr6 159507320 159507449 -22907793 - MIR SINE MIR -65 143 31 612 256 74 33 chr6 159507646 159507861 -22907381 + L2 LINE L2 3089 3312 -1 244 139 0 0 chr6 159507862 159507898 -22907344 + L2 LINE L2 3266 3301 -12 2034 95 7 0 chr6 159509613 159509886 -22905356 + AluSx SINE Alu 38 312 0 397 257 158 55 chr6 159511908 159512180 -22903062 + L1M2 LINE L1 691 990 -5859 237 285 34 0 chr6 159512288 159512378 -22902864 + C-rich Low_complexity Low_complexity 1 156 0 231 61 0 0 chr6 159512514 159512547 -22902695 + (CGG)n Simple_repeat Simple_repeat 2 34 0 44 56 0 0 chr6 159512862 159512934 -22902308 + GC_rich Low_complexity Low_complexity 1 72 0 1266 193 110 30 chr6 159514164 159514564 -22900678 + L1MC4 LINE L1 7487 7918 -124 22 35 0 0 chr6 159514638 159514667 -22900575 + AT_rich Low_complexity Low_complexity 1 29 0 542 159 71 0 chr6 159515138 159515251 -22899991 - MER3 DNA MER1_type -12 197 77 189 311 126 30 chr6 159515428 159515563 -22899679 - L2 LINE L2 -281 2991 2844 337 285 98 55 chr6 159515821 159516056 -22899186 - MLT1L LTR MaLR -50 565 321 233 268 101 116 chr6 159516193 159516660 -22898582 - L2 LINE L2 -809 2505 2046 882 152 0 0 chr6 159516661 159516793 -22898449 + FRAM SINE Alu 37 168 -8 976 128 123 13 chr6 159516977 159517204 -22898038 + L1MA8 LINE L1 6019 6270 -21 2176 118 3 16 chr6 159517290 159517605 -22897637 + AluSx SINE Alu 1 311 -1 310 343 29 7 chr6 159518315 159518455 -22896787 - MIR SINE MIR -105 157 15 259 361 46 29 chr6 159518582 159518820 -22896422 - L2 LINE L2 -220 3052 2811 29 0 0 0 chr6 159519370 159519399 -22895843 + AT_rich Low_complexity Low_complexity 1 29 0 400 264 55 65 chr6 159519434 159519595 -22895647 + L1ME4a LINE L1 4405 4565 -1581 1639 171 7 16 chr6 159519595 159519899 -22895343 - AluJb SINE Alu -7 305 5 400 264 55 65 chr6 159519899 159519938 -22895304 + L1ME4a LINE L1 4565 4603 -1543 234 186 35 58 chr6 159519962 159520048 -22895194 + L1MC4a LINE L1 5857 5940 -1868 294 50 0 0 chr6 159520050 159520090 -22895152 + (CA)n Simple_repeat Simple_repeat 1 40 0 2372 58 14 3 chr6 159520256 159520549 -22894693 + AluY SINE Alu 1 296 -15 207 250 14 56 chr6 159520607 159520679 -22894563 + MIR SINE MIR 168 236 -26 293 333 34 8 chr6 159520908 159521025 -22894217 - L2 LINE L2 -2 3311 3192 2136 106 3 3 chr6 159521127 159521461 -22893781 + AluSg SINE Alu 1 334 0 950 261 92 50 chr6 159521521 159522160 -22893082 + L1ME4a LINE L1 5425 6090 -31 2039 116 0 58 chr6 159523190 159523365 -22891877 - AluSx SINE Alu -19 293 142 2392 55 3 58 chr6 159523365 159523694 -22891548 - AluY SINE Alu 0 311 1 2039 116 0 58 chr6 159523694 159523829 -22891413 - AluSx SINE Alu -170 142 1 710 207 28 137 chr6 159524797 159525184 -22890058 - MER2 DNA MER2_type 0 345 1 195 244 23 93 chr6 159526114 159526200 -22889042 + L2 LINE L2 3193 3272 0 355 280 159 29 chr6 159526288 159526495 -22888747 - L1ME4a LINE L1 0 6121 5888 448 272 155 58 chr6 159526529 159526579 -22888663 - LTR16B LTR ERVL 0 464 420 3300 126 0 81 chr6 159526579 159527149 -22888093 - MER1A DNA MER1_type 0 527 4 448 272 155 58 chr6 159527149 159527492 -22887750 - LTR16B LTR ERVL -44 420 33 337 267 112 58 chr6 159527583 159527789 -22887453 - L1ME4a LINE L1 -16 6105 5889 496 291 142 0 chr6 159529449 159529597 -22885645 - MIR3 SINE MIR -3 205 37 1343 149 85 53 chr6 159529939 159530221 -22885021 - AluJo SINE Alu -19 293 3 2051 132 0 0 chr6 159530375 159530663 -22884579 - AluSx SINE Alu -24 288 1 294 268 52 21 chr6 159531233 159531330 -22883912 - MIR SINE MIR -100 162 63 1269 188 87 11 chr6 159531330 159531607 -22883635 - AluJo SINE Alu -4 298 1 1746 180 3 26 chr6 159532120 159532425 -22882817 + AluJo SINE Alu 1 298 -14 234 191 0 0 chr6 159532606 159532653 -22882589 + L1MC4 LINE L1 7628 7674 -368 342 284 28 7 chr6 159532672 159532813 -22882429 + L1MC4 LINE L1 7745 7888 -154 212 200 18 0 chr6 159532844 159532899 -22882343 + GA-rich Low_complexity Low_complexity 2 57 0 324 246 35 0 chr6 159532908 159533022 -22882220 + L1MC4 LINE L1 7925 8042 0 323 293 57 38 chr6 159533079 159533236 -22882006 + MIR SINE MIR 32 191 -71 347 342 58 51 chr6 159533381 159533694 -22881548 + L1MEd LINE L1 46 360 -5759 227 324 0 0 chr6 159533769 159533840 -22881402 + L1MEd LINE L1 599 669 -5450 2165 124 7 0 chr6 159533884 159534182 -22881060 + AluSg SINE Alu 1 300 -10 716 263 79 18 chr6 159534290 159534585 -22880657 + L1MEd LINE L1 950 1311 -4964 186 43 0 0 chr6 159534585 159534608 -22880634 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 716 263 79 18 chr6 159534608 159534712 -22880530 + L1MEd LINE L1 1311 1407 -4868 270 253 63 0 chr6 159534733 159534812 -22880430 + L1M4 LINE L1 3522 3605 -2541 270 239 33 0 chr6 159534861 159534953 -22880289 + L1M4 LINE L1 4107 4201 -1945 289 279 137 46 chr6 159535013 159535196 -22880046 - MIR SINE MIR -44 218 28 2247 122 22 71 chr6 159535431 159535841 -22879401 + MLT1B LTR MaLR 1 390 0 196 345 71 26 chr6 159537917 159538030 -22877212 + L2 LINE L2 3116 3233 -39 2230 119 0 3 chr6 159538064 159538375 -22876867 - AluSx SINE Alu -2 310 1 1501 142 0 0 chr6 159538383 159538601 -22876641 - 7SLRNA srpRNA srpRNA -102 218 1 728 259 78 72 chr6 159539028 159539080 -22876162 - L2 LINE L2 0 3313 3263 1905 158 0 6 chr6 159539080 159539391 -22875851 - AluJo SINE Alu -3 309 1 728 259 78 72 chr6 159539391 159539686 -22875556 - L2 LINE L2 -50 3263 2964 2351 119 60 96 chr6 159539686 159540297 -22874945 + MER4B LTR ERV1 22 779 0 221 197 76 0 chr6 159540324 159540390 -22874852 - L2 LINE L2 -411 2902 2832 240 284 27 0 chr6 159540403 159540477 -22874765 + MER5B DNA MER1_type 3 78 -100 190 77 51 26 chr6 159540506 159540545 -22874697 - L2 LINE L2 -500 2814 2775 847 208 0 12 chr6 159540546 159540714 -22874528 - FRAM SINE Alu -17 159 1 431 204 117 73 chr6 159540716 159540794 -22874448 - L2 LINE L2 -539 2775 2687 2152 135 0 10 chr6 159540794 159541105 -22874137 + AluSx SINE Alu 1 308 -4 431 204 117 73 chr6 159541105 159541163 -22874079 - L2 LINE L2 -627 2687 2633 263 338 103 0 chr6 159541759 159541895 -22873347 + MIR SINE MIR 112 261 -1 779 255 152 37 chr6 159542636 159542812 -22872430 - L1ME4a LINE L1 0 6121 5967 2110 134 0 3 chr6 159542812 159543119 -22872123 - AluSx SINE Alu -6 306 1 779 255 152 37 chr6 159543119 159543456 -22871786 - L1ME4a LINE L1 -154 5967 5549 32 67 0 0 chr6 159543868 159543928 -22871314 + AT_rich Low_complexity Low_complexity 1 60 0 999 170 39 0 chr6 159544000 159544182 -22871060 + MER5A DNA MER1_type 1 189 0 258 239 209 40 chr6 159544704 159544905 -22870337 - MIR SINE MIR -3 259 25 441 0 0 0 chr6 159545258 159545307 -22869935 + (TG)n Simple_repeat Simple_repeat 2 50 0 265 333 124 76 chr6 159545417 159545708 -22869534 - L2 LINE L2 -12 3260 2956 460 333 16 40 chr6 159546094 159546213 -22869029 - HAL1 LINE L1 -33 2474 2354 2225 128 0 0 chr6 159546213 159546525 -22868717 - AluSq SINE Alu -1 312 1 460 333 16 40 chr6 159546525 159546657 -22868585 - HAL1 LINE L1 -153 2354 2229 1548 197 9 62 chr6 159547322 159547774 -22867468 - L1MEc LINE L1 -3324 2891 2464 1041 149 13 0 chr6 159547777 159547931 -22867311 - AluSg/x SINE Alu -18 294 139 540 221 7 13 chr6 159548009 159548163 -22867079 - L1MEc LINE L1 -3818 2397 2245 2260 206 29 62 chr6 159548194 159548379 -22866863 - L1MEc LINE L1 -4085 2311 2121 762 185 23 0 chr6 159548379 159548509 -22866733 - FLAM_A SINE Alu 0 133 1 2260 206 29 62 chr6 159548509 159548999 -22866243 - L1MEc LINE L1 -4275 2121 1661 1939 159 31 0 chr6 159548999 159549289 -22865953 - AluJb SINE Alu -8 304 6 2260 206 29 62 chr6 159549289 159549366 -22865876 - L1MEc LINE L1 -4735 1661 1583 482 285 65 38 chr6 159549666 159549852 -22865390 - MIR SINE MIR -60 202 12 389 300 31 54 chr6 159549971 159550194 -22865048 - L2 LINE L2 -814 2500 2283 820 151 22 99 chr6 159550268 159550500 -22864742 - MER20 DNA MER1_type -5 214 1 820 325 81 18 chr6 159550500 159550996 -22864246 - L2 LINE L2 -1090 2224 1698 832 133 47 0 chr6 159551027 159551155 -22864087 - AluJb SINE Alu -178 134 1 307 241 0 24 chr6 159551156 159551239 -22864003 + CT-rich Low_complexity Low_complexity 2 82 0 239 355 134 17 chr6 159551283 159551455 -22863787 + L2 LINE L2 2891 3082 -190 1603 238 133 45 chr6 159552271 159552740 -22862502 - L1MC4a LINE L1 -1637 6171 5612 2321 120 5 32 chr6 159552740 159553114 -22862128 - THE1B LTR MaLR 0 364 1 1603 238 133 45 chr6 159553114 159553383 -22861859 - L1MC4a LINE L1 -2196 5612 5368 21 36 0 0 chr6 159553393 159553421 -22861821 + AT_rich Low_complexity Low_complexity 1 28 0 4603 143 66 14 chr6 159553762 159554636 -22860606 - L1MC3 LINE L1 -1 7784 6865 662 35 0 12 chr6 159554640 159554726 -22860516 + (TTTC)n Simple_repeat Simple_repeat 4 88 0 471 148 99 20 chr6 159554738 159554839 -22860403 + FRAM SINE Alu 68 176 0 631 141 20 0 chr6 159556749 159556842 -22858400 - MER20 DNA MER1_type -24 195 101 987 152 9 118 chr6 159556842 159557053 -22858189 - MER1B DNA MER1_type 0 339 152 256 154 0 0 chr6 159557089 159557128 -22858114 - MER20 DNA MER1_type -138 81 43 2758 178 34 0 chr6 159557198 159557671 -22857571 + MLT1D LTR MaLR 9 497 -8 231 245 0 20 chr6 159557680 159557729 -22857513 - MER81 DNA DNA -66 48 1 607 310 81 37 chr6 159558244 159558567 -22856675 + MLT1J LTR MaLR 45 381 -130 256 250 0 0 chr6 159558537 159558585 -22856657 + MLT1J1 LTR MaLR 286 333 -113 * 23 33 0 0 chr6 159558708 159558738 -22856504 + AT_rich Low_complexity Low_complexity 1 30 0 914 123 0 0 chr6 159558738 159558860 -22856382 - FRAM SINE Alu -23 153 32 1499 107 4 4 chr6 159559298 159559532 -22855710 - L1MA8 LINE L1 -4 6287 6054 3838 204 36 30 chr6 159559560 159560534 -22854708 + L1ME1 LINE L1 5188 6166 0 752 234 106 29 chr6 159561512 159561893 -22853349 + MLT1J LTR MaLR 28 511 0 2409 132 3 0 chr6 159562005 159562345 -22852897 + MER7A DNA MER2_type 8 346 0 397 264 39 23 chr6 159562348 159562477 -22852765 - L2 LINE L2 -25 3288 3158 569 207 139 53 chr6 159562489 159562697 -22852545 + LTR50 LTR ERVL 3 228 -567 255 205 24 95 chr6 159562725 159562810 -22852432 + LTR50 LTR ERVL 390 548 -247 589 219 51 6 chr6 159562928 159563138 -22852104 + LTR50 LTR ERVL 540 795 0 447 186 10 10 chr6 159565372 159565469 -22849773 + L1MA4A LINE L1 6182 6278 -25 1880 176 16 3 chr6 159566848 159567154 -22848088 + AluJo SINE Alu 1 310 -2 2346 88 3 0 chr6 159567405 159567701 -22847541 - AluSq SINE Alu -15 298 2 625 282 88 20 chr6 159569112 159569417 -22845825 - L1ME3 LINE L1 -23 6139 5814 238 250 83 46 chr6 159570110 159570218 -22845024 + MIR3 SINE MIR 59 170 -38 402 21 0 0 chr6 159570571 159570618 -22844624 + (TG)n Simple_repeat Simple_repeat 2 48 0 1878 209 73 37 chr6 159570755 159571218 -22844024 - MLT1D LTR MaLR -3 502 23 342 0 0 0 chr6 159571498 159571536 -22843706 + (TG)n Simple_repeat Simple_repeat 2 39 0 934 227 19 10 chr6 159571539 159571746 -22843496 - MER63A DNA MER1_type 0 210 2 471 281 55 0 chr6 159572161 159572289 -22842953 - MER5A DNA MER1_type 0 189 55 25 75 0 0 chr6 159573559 159573612 -22841630 + AT_rich Low_complexity Low_complexity 1 53 0 315 261 93 19 chr6 159574351 159574512 -22840730 - L1ME4a LINE L1 -2 6119 5947 1571 186 55 13 chr6 159574583 159574894 -22840348 - MLT1A2 LTR MaLR -49 325 2 1007 150 0 0 chr6 159574895 159575048 -22840194 - MLT1A2-int LTR MaLR 0 1735 1583 224 264 0 0 chr6 159575120 159575173 -22840069 + L2 LINE L2 3216 3268 -4 285 215 25 25 chr6 159575521 159575643 -22839599 - MLT1L LTR MaLR -4 611 463 399 113 0 0 chr6 159575784 159575846 -22839396 + (TTTCC)n Simple_repeat Simple_repeat 4 65 0 2055 125 0 4 chr6 159575852 159576311 -22838931 - AluSc SINE Alu 0 458 1 2146 89 43 33 chr6 159576311 159576614 -22838628 - AluSx SINE Alu -5 307 1 380 248 27 74 chr6 159576683 159576832 -22838410 - MLT1L LTR MaLR -332 283 142 508 216 110 29 chr6 159577091 159577235 -22838007 - MLT1H LTR MaLR -279 187 44 698 207 50 22 chr6 159577237 159577416 -22837826 + MER96B DNA MER1_type? 1 184 -233 2272 81 27 3 chr6 159577533 159577828 -22837414 - AluSp SINE Alu -11 302 1 204 67 0 0 chr6 159579155 159579185 -22836057 + (GGAAA)n Simple_repeat Simple_repeat 4 33 0 2121 133 0 3 chr6 159579347 159579647 -22835595 + AluSx SINE Alu 1 299 -13 181 256 167 0 chr6 159579746 159579824 -22835418 - L2 LINE L2 -12 3260 3170 * 362 304 76 18 chr6 159579811 159580035 -22835207 + L2 LINE L2 2848 3084 -188 484 171 26 0 chr6 159580261 159580413 -22834829 + (CAGAGA)n Simple_repeat Simple_repeat 4 159 0 276 107 15 61 chr6 159580413 159580544 -22834698 + HERV17 LTR ERV1 709 833 -7793 546 67 0 0 chr6 159580761 159580836 -22834406 + (TG)n Simple_repeat Simple_repeat 1 75 0 2162 118 7 0 chr6 159581435 159581843 -22833399 - AluSx SINE Alu 0 410 1 1559 106 5 0 chr6 159581865 159582082 -22833160 - L1PA8 LINE L1 -2 6170 5953 358 342 17 0 chr6 159582542 159582662 -22832580 + MIR SINE MIR 116 237 -25 845 179 19 0 chr6 159583121 159583277 -22831965 + AluJb SINE Alu 134 292 -20 2192 87 18 3 chr6 159583736 159584022 -22831220 + AluSc SINE Alu 1 290 -19 627 232 97 5 chr6 159584834 159585019 -22830223 + MIR SINE MIR 7 208 -54 1734 119 4 0 chr6 159585057 159585300 -22829942 - AluSx SINE Alu -17 295 52 518 103 0 13 chr6 159585307 159585385 -22829857 - AluS SINE Alu -235 78 2 269 330 48 19 chr6 159585602 159585705 -22829537 + L2 LINE L2 3144 3249 -23 1432 175 31 96 chr6 159588690 159589107 -22826135 - MLT1B LTR MaLR 0 390 1 362 311 17 0 chr6 159590091 159590210 -22825032 + L2 LINE L2 3187 3307 -6 21 0 0 0 chr6 159593334 159593355 -22821887 + AT_rich Low_complexity Low_complexity 1 21 0 190 295 11 74 chr6 159593496 159593591 -22821651 + MER5B DNA MER1_type 89 177 -1 197 243 78 87 chr6 159593652 159593710 -22821532 - L3 LINE CR1 -116 1461 1403 1073 168 0 0 chr6 159593710 159593889 -22821353 - L1PB4 LINE L1 -3 6153 5975 197 243 78 87 chr6 159593889 159593933 -22821309 - L3 LINE CR1 -174 1403 1360 1167 304 72 52 chr6 159594454 159595348 -22819894 - L3 LINE CR1 -227 1350 439 298 292 10 10 chr6 159595948 159596044 -22819198 + L3 LINE CR1 799 894 -683 542 107 0 0 chr6 159596128 159596203 -22819039 - MADE1 DNA Mariner 0 80 6 229 333 128 8 chr6 159596349 159596466 -22818776 - L2 LINE L2 -6 3266 3136 231 286 173 8 chr6 159597148 159597281 -22817961 + MIR SINE MIR 107 261 -1 2143 113 3 0 chr6 159597426 159597717 -22817525 + AluSx SINE Alu 1 292 -20 309 26 0 0 chr6 159600521 159600559 -22814683 + (CA)n Simple_repeat Simple_repeat 2 39 0 215 254 63 0 chr6 159601036 159601099 -22814143 + (CATG)n Simple_repeat Simple_repeat 4 70 0 * 225 271 0 0 chr6 159601053 159601101 -22814141 + (CA)n Simple_repeat Simple_repeat 1 48 0 29 0 0 0 chr6 159601767 159601796 -22813446 + AT_rich Low_complexity Low_complexity 1 29 0 279 221 21 42 chr6 159602048 159602143 -22813099 - L1MC5 LINE L1 -37 7924 7832 220 289 10 67 chr6 159606526 159606630 -22808612 - MIR3 SINE MIR -3 205 108 2670 176 86 25 chr6 159607251 159607315 -22807927 - MLT2B1 LTR ERVL 0 520 461 2119 139 0 0 chr6 159607315 159607617 -22807625 - AluSx SINE Alu -10 302 1 2670 176 86 25 chr6 159607617 159608042 -22807200 - MLT2B1 LTR ERVL -59 461 1 5707 187 56 52 chr6 159608399 159609036 -22806206 + Charlie1a DNA MER1_type 24 657 -2104 1820 171 3 0 chr6 159609036 159609322 -22805920 + AluJo SINE Alu 1 287 -25 5707 187 56 52 chr6 159609322 159610109 -22805133 + Charlie1a DNA MER1_type 657 1454 -1 315 143 83 60 chr6 159610470 159610554 -22804688 + MIR SINE MIR 69 154 -108 333 0 0 0 chr6 159610609 159610646 -22804596 + (CA)n Simple_repeat Simple_repeat 2 38 0 230 227 160 0 chr6 159611277 159611352 -22803890 + MIR SINE MIR 74 141 -67 1142 231 79 81 chr6 159611870 159612264 -22802978 - MLT1J LTR MaLR -117 394 2 804 167 22 0 chr6 159612327 159612465 -22802777 - MER58B DNA MER1_type -3 338 198 579 246 36 73 chr6 159612547 159612767 -22802475 - MIR SINE MIR -25 237 26 1105 145 123 104 chr6 159613296 159613565 -22801677 - AluJb SINE Alu -10 302 29 397 265 63 85 chr6 159614033 159614256 -22800986 - MIR SINE MIR -34 228 11 1903 148 3 0 chr6 159614500 159614790 -22800452 + AluJb SINE Alu 1 291 -21 24 0 0 0 chr6 159614790 159614814 -22800428 + AT_rich Low_complexity Low_complexity 1 24 0 1128 289 159 18 chr6 159615023 159615847 -22799395 - L2 LINE L2 -38 3275 2319 364 365 96 15 chr6 159615990 159616384 -22798858 - L2 LINE L2 -410 2904 2479 225 341 85 23 chr6 159616704 159616880 -22798362 - L2 LINE L2 -1323 1991 1805 345 164 112 60 chr6 159617892 159618026 -22797216 + MLT1J2 LTR MaLR 72 212 -238 263 214 94 79 chr6 159618076 159618208 -22797034 + MLT1J2 LTR MaLR 315 409 0 419 319 119 22 chr6 159619657 159619883 -22795359 - MIR SINE MIR -14 248 1 2470 128 62 50 chr6 159620127 159620549 -22794693 + MSTA LTR MaLR 2 428 0 2240 40 44 4 chr6 159620851 159621123 -22794119 + AluY SINE Alu 1 283 -28 949 258 127 66 chr6 159621571 159622059 -22793183 - LTR33A LTR ERVL -3 520 3 2062 212 18 67 chr6 159622092 159622273 -22792969 + MLT1C LTR MaLR 1 189 -278 2184 118 0 7 chr6 159622273 159622570 -22792672 + AluSx SINE Alu 1 295 -17 2062 212 18 67 chr6 159622570 159622879 -22792363 + MLT1C LTR MaLR 189 467 0 226 309 44 0 chr6 159623020 159623088 -22792154 - HAL1 LINE L1 -2432 75 5 1457 183 83 3 chr6 159624330 159624642 -22790600 + L1MEc LINE L1 462 798 -5598 1470 207 82 71 chr6 159624855 159625026 -22790216 + L1MC5 LINE L1 7303 7471 -490 2779 111 80 5 chr6 159625026 159625424 -22789818 + MSTA LTR MaLR 1 428 0 1470 207 82 71 chr6 159625424 159625871 -22789371 + L1MC5 LINE L1 7471 7928 -33 301 290 144 40 chr6 159626254 159626443 -22788799 - MIR SINE MIR -43 219 12 759 175 84 75 chr6 159626910 159627255 -22787987 - MER31B LTR ERV1 -1 465 1 792 104 0 0 chr6 159628839 159628945 -22786297 + L1PA8 LINE L1 6062 6167 -5 2721 188 63 4 chr6 159629106 159629632 -22785610 - MER89 LTR ERV1 -2 557 1 1695 173 31 104 chr6 159630067 159630488 -22784754 - MLT1B LTR MaLR 0 390 1 1933 151 0 7 chr6 159630995 159631300 -22783942 - AluSq SINE Alu -10 303 1 509 203 158 93 chr6 159631332 159631578 -22783664 - MIR SINE MIR 0 262 1 1504 231 32 32 chr6 159631871 159632244 -22782998 - L1MEc LINE L1 -5980 416 44 594 224 0 6 chr6 159632257 159632418 -22782824 - L1M4 LINE L1 -1587 4559 4400 570 263 13 0 chr6 159632426 159632578 -22782664 - L1MEc LINE L1 -4604 1792 1639 203 274 0 0 chr6 159633971 159634022 -22781220 + MIR SINE MIR 145 195 -67 2001 119 22 16 chr6 159635237 159635548 -22779694 - AluSq SINE Alu 0 313 1 325 349 35 35 chr6 159636109 159636307 -22778935 - L1M4 LINE L1 -1542 4604 4407 2183 106 0 37 chr6 159636312 159636347 -22778895 - AluSg SINE Alu 0 310 275 194 0 39 0 chr6 159636347 159636373 -22778869 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2183 106 0 37 chr6 159636373 159636659 -22778583 - AluSg SINE Alu -35 275 1 1197 230 32 66 chr6 159636781 159636879 -22778363 - LTR16A LTR ERVL 0 457 357 1862 154 23 0 chr6 159636879 159637184 -22778058 + AluJb SINE Alu 1 312 0 1197 230 32 66 chr6 159637184 159637535 -22777707 - LTR16A LTR ERVL -100 357 1 934 251 65 11 chr6 159637962 159638241 -22777001 - L1ME2 LINE L1 -9 6155 5862 782 192 23 40 chr6 159638250 159638427 -22776815 - L1ME1 LINE L1 -4 6162 5989 286 162 54 0 chr6 159638421 159638495 -22776747 - L1MEc LINE L1 -5291 1105 1028 * 1403 213 38 48 chr6 159638495 159638969 -22776273 - L1MEc LINE L1 -5321 1075 607 47 44 0 0 chr6 159639014 159639082 -22776160 + AT_rich Low_complexity Low_complexity 1 68 0 15189 154 35 4 chr6 159639113 159643382 -22771860 + L1PB1 LINE L1 688 4824 -2043 318 98 0 0 chr6 159643382 159643433 -22771809 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 15189 154 35 4 chr6 159643433 159643673 -22771569 + L1PB1 LINE L1 4824 5055 -1812 2130 192 71 12 chr6 159643673 159644153 -22771089 - LTR22 LTR ERVK 0 509 2 15189 154 35 4 chr6 159644153 159645631 -22769611 + L1PB1 LINE L1 5055 6867 0 1839 277 54 41 chr6 159645687 159645739 -22769503 - L1MEc LINE L1 -4729 1667 1617 1786 169 7 3 chr6 159645739 159646034 -22769208 - AluJb SINE Alu -16 296 1 1839 277 54 41 chr6 159646034 159646952 -22768290 - L1MEc LINE L1 -4779 1617 685 1874 101 8 0 chr6 159646955 159647202 -22768040 - AluSx SINE Alu -5 307 59 1414 129 0 9 chr6 159647516 159647726 -22767516 + AluSg/x SINE Alu 95 302 -10 24 0 0 0 chr6 159647876 159647900 -22767342 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr6 159648787 159648810 -22766432 + AT_rich Low_complexity Low_complexity 1 23 0 1716 126 16 74 chr6 159648892 159649046 -22766196 + AluJb SINE Alu 1 130 -182 207 0 0 0 chr6 159649046 159649069 -22766173 + (CA)n Simple_repeat Simple_repeat 2 24 0 1716 126 16 74 chr6 159649069 159649223 -22766019 + AluJb SINE Alu 130 291 -21 297 243 115 10 chr6 159649400 159649550 -22765692 + MIR SINE MIR 23 191 -63 326 232 244 60 chr6 159649584 159649703 -22765539 - L1MC4a LINE L1 -1443 6365 6269 2369 82 7 3 chr6 159649703 159650006 -22765236 - AluSq SINE Alu -9 304 1 326 232 244 60 chr6 159650006 159650201 -22765041 - L1MC4a LINE L1 -1539 6269 5993 180 340 85 9 chr6 159650277 159650383 -22764859 - L3 LINE CR1 -291 1286 1173 864 131 16 0 chr6 159650408 159650530 -22764712 + FLAM_C SINE Alu 1 124 -9 318 216 153 18 chr6 159650568 159650679 -22764563 - MIR SINE MIR -74 188 63 313 268 120 57 chr6 159650827 159651036 -22764206 - L3 LINE CR1 -503 1074 853 28 29 0 0 chr6 159651463 159651498 -22763744 + AT_rich Low_complexity Low_complexity 1 35 0 185 287 32 11 chr6 159652089 159652183 -22763059 - MIR3 SINE MIR -1 207 112 214 250 21 0 chr6 159652326 159652374 -22762868 + MIR3 SINE MIR 108 156 -52 1993 123 7 14 chr6 159653570 159653862 -22761380 + AluJb SINE Alu 1 290 -22 2226 94 24 0 chr6 159653983 159654271 -22760971 - AluSp SINE Alu -18 295 1 395 237 94 20 chr6 159655554 159655864 -22759378 - L1ME3 LINE L1 -336 5895 5498 330 272 95 45 chr6 159655875 159656312 -22758930 - L1ME3 LINE L1 -4744 1497 1055 2204 95 0 0 chr6 159756314 159756610 -22658632 - AluSc SINE Alu -13 296 1 2082 99 17 0 chr6 159757075 159757368 -22657874 - AluSg SINE Alu -12 298 1 1723 132 32 26 chr6 159757371 159757681 -22657561 - AluSx SINE Alu 0 312 1 2056 96 3 26 chr6 159758581 159758883 -22656359 + AluSx SINE Alu 1 295 -17 255 271 135 0 chr6 159759355 159759451 -22655791 + MIR SINE MIR 45 153 -55 368 281 124 26 chr6 159761509 159761662 -22653580 - MIR SINE MIR -49 213 46 2281 90 0 0 chr6 159761662 159761962 -22653280 - AluSg SINE Alu -10 300 1 266 264 0 42 chr6 159762563 159762635 -22652607 - L2 LINE L2 0 3272 3204 464 185 37 7 chr6 159762693 159762798 -22652444 - MIR SINE MIR -54 208 101 1684 165 28 0 chr6 159762799 159763090 -22652152 + AluJo SINE Alu 1 299 -13 826 194 50 12 chr6 159763095 159763255 -22651987 + AluJb SINE Alu 137 302 -10 309 319 88 0 chr6 159763258 159763349 -22651893 - MIR SINE MIR -157 105 7 834 290 121 17 chr6 159763576 159763997 -22651245 - L2 LINE L2 -955 2359 1895 253 339 107 25 chr6 159764023 159764303 -22650939 - L2 LINE L2 -1607 1707 1405 2004 131 0 10 chr6 159765310 159765616 -22649626 + AluSx SINE Alu 1 303 -9 897 272 11 48 chr6 159766186 159766391 -22648851 - MIR SINE MIR 0 262 68 2019 113 31 0 chr6 159766391 159766682 -22648560 - AluJb SINE Alu -12 300 1 897 272 11 48 chr6 159766682 159766744 -22648498 - MIR SINE MIR -194 68 5 192 273 118 45 chr6 159767546 159767656 -22647586 - MIR SINE MIR -142 120 3 1885 115 66 0 chr6 159767699 159767985 -22647257 - AluSx SINE Alu -7 305 1 276 186 0 0 chr6 159768199 159768242 -22647000 + Alu SINE Alu 1 43 -259 1601 61 14 9 chr6 159768561 159768775 -22646467 + AluY SINE Alu 87 301 -10 1109 117 31 0 chr6 159768775 159768937 -22646305 + AluSq SINE Alu 134 300 -13 23 0 0 0 chr6 159769044 159769067 -22646175 + AT_rich Low_complexity Low_complexity 1 23 0 1959 148 0 3 chr6 159769218 159769523 -22645719 - AluJb SINE Alu -8 304 1 2064 131 0 3 chr6 159770011 159770324 -22644918 + AluSx SINE Alu 1 312 0 378 245 149 58 chr6 159770683 159770741 -22644501 - MIR SINE MIR -56 206 155 2311 89 0 0 chr6 159770741 159771044 -22644198 - AluSp SINE Alu -10 303 1 378 245 149 58 chr6 159771044 159771173 -22644069 - MIR SINE MIR -107 155 2 362 347 52 28 chr6 159772361 159772410 -22642832 - L1MC/D LINE L1 -2156 5652 5606 1624 184 21 0 chr6 159772410 159772693 -22642549 - AluJb SINE Alu -20 292 4 362 347 52 28 chr6 159772693 159772856 -22642386 - L1MC/D LINE L1 -2202 5606 5435 2237 81 10 3 chr6 159772925 159773221 -22642021 - AluSg SINE Alu -12 298 1 2389 62 0 23 chr6 159773354 159773530 -22641712 - AluY SINE Alu -12 299 131 2421 74 0 0 chr6 159773530 159773841 -22641401 - AluY SINE Alu 0 311 1 2389 62 0 23 chr6 159773841 159773970 -22641272 - AluY SINE Alu -180 131 1 337 172 92 81 chr6 159774332 159774419 -22640823 + L1ME4a LINE L1 6031 6118 -3 2246 88 16 9 chr6 159774593 159774910 -22640332 - L1PA11 LINE L1 0 6174 5856 234 353 29 22 chr6 159774910 159775046 -22640196 + MER117 DNA MER1_type 60 196 -1 523 263 106 1 chr6 159775046 159775208 -22640034 - MIR3 SINE MIR -22 186 3 231 276 89 8 chr6 159775581 159775704 -22639538 + L1ME4a LINE L1 5961 6093 -28 715 177 18 0 chr6 159775896 159776009 -22639233 - FLAM_A SINE Alu -18 115 1 1861 147 0 39 chr6 159776047 159776359 -22638883 + AluJb SINE Alu 1 300 -12 1786 159 3 10 chr6 159777264 159777578 -22637664 + AluJb SINE Alu 1 312 0 2001 113 0 3 chr6 159778645 159778952 -22636290 - AluSx SINE Alu 0 306 1 2236 99 0 0 chr6 159779137 159779441 -22635801 + AluY SINE Alu 1 304 -7 988 113 0 0 chr6 159779795 159779928 -22635314 - FLAM_C SINE Alu 0 133 1 302 227 0 15 chr6 159780316 159780382 -22634860 - Charlie7 DNA MER1_type -1 2611 2547 950 142 0 0 chr6 159780383 159780554 -22634688 - AluSg/x SINE Alu 0 305 135 222 349 73 0 chr6 159782088 159782197 -22633045 + L2 LINE L2 3154 3270 -2 2039 104 3 20 chr6 159782364 159782662 -22632580 + AluSq SINE Alu 1 293 -20 2097 150 0 17 chr6 159782997 159783351 -22631891 - L1MA7 LINE L1 -3 6288 5941 230 260 139 95 chr6 159784103 159784649 -22630593 + L2 LINE L2 1337 1906 -1408 2104 112 3 0 chr6 159784706 159785001 -22630241 + AluSc SINE Alu 1 296 -13 354 308 8 23 chr6 159785237 159785370 -22629872 + LTR67 LTR ERVL 384 514 -43 243 295 19 76 chr6 159785631 159785736 -22629506 - MER5A DNA MER1_type -47 142 44 205 207 107 116 chr6 159785642 159785763 -22629479 + MER5A DNA MER1_type 70 189 0 * 892 242 79 5 chr6 159785767 159785982 -22629260 + MIR SINE MIR 14 244 -18 181 167 83 0 chr6 159785950 159785986 -22629256 + L2 LINE L2 3258 3296 -17 * 187 206 235 29 chr6 159786042 159786110 -22629132 - MIR SINE MIR -68 140 59 509 283 14 14 chr6 159786616 159786761 -22628481 + L2 LINE L2 2481 2625 -689 1975 125 17 3 chr6 159787389 159787686 -22627556 + AluSx SINE Alu 1 301 -11 576 0 0 0 chr6 159787687 159787751 -22627491 + (AATAG)n Simple_repeat Simple_repeat 2 65 0 495 0 0 0 chr6 159788558 159788613 -22626629 + (CA)n Simple_repeat Simple_repeat 2 56 0 324 195 0 11 chr6 159788779 159788902 -22626340 + MLT1A1 LTR MaLR 1 156 -209 4183 123 13 32 chr6 159788947 159789624 -22625618 + L1PA13 LINE L1 5493 6156 -7 1244 201 5 5 chr6 159789640 159789864 -22625378 + MLT1A1 LTR MaLR 142 365 0 1383 123 127 32 chr6 159790211 159790464 -22624778 + AluJo SINE Alu 4 280 -32 255 61 0 0 chr6 159790464 159790497 -22624745 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 261 275 15 0 chr6 159790521 159790587 -22624655 + L2 LINE L2 3200 3306 -7 634 220 102 0 chr6 159791140 159791326 -22623916 - LTR37A LTR ERV1 0 426 222 262 187 67 27 chr6 159791427 159791502 -22623740 - LTR37A LTR ERV1 -226 200 123 771 313 140 28 chr6 159792023 159792317 -22622925 + L3 LINE CR1 930 1190 -387 222 37 0 0 chr6 159792317 159792344 -22622898 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 771 313 140 28 chr6 159792344 159792586 -22622656 + L3 LINE CR1 1190 1526 -51 2047 115 63 41 chr6 159792599 159792963 -22622279 - THE1C LTR MaLR 0 375 4 25 31 0 0 chr6 159794310 159794342 -22620900 + AT_rich Low_complexity Low_complexity 1 32 0 1874 131 0 14 chr6 159794342 159794633 -22620609 - AluSq SINE Alu -26 287 1 1410 140 98 21 chr6 159794943 159795228 -22620014 - AluJo SINE Alu -5 307 1 984 247 65 54 chr6 159795916 159796432 -22618810 + PABL_B LTR ERV1 1 667 0 25 0 0 0 chr6 159796519 159796544 -22618698 + AT_rich Low_complexity Low_complexity 1 25 0 1821 147 91 68 chr6 159797903 159798071 -22617171 + LTR8 LTR ERV1 1 164 -527 1375 186 95 0 chr6 159798071 159798356 -22616886 + AluJb SINE Alu 1 312 0 1821 147 91 68 chr6 159798356 159798581 -22616661 + LTR8 LTR ERV1 164 403 -288 778 117 0 18 chr6 159798587 159798698 -22616544 + LTR8 LTR ERV1 583 691 0 334 250 94 83 chr6 159798742 159798875 -22616367 - MIR SINE MIR -73 189 52 3982 60 14 4 chr6 159798875 159799389 -22615853 - L1PA6 LINE L1 -3 6151 5633 334 250 94 83 chr6 159799389 159799435 -22615807 - MIR SINE MIR -210 52 8 373 261 179 10 chr6 159799603 159799798 -22615444 - L1ME LINE L1 -364 5757 5530 381 247 168 17 chr6 159799933 159800198 -22615044 - L1ME LINE L1 -732 5434 5286 180 0 0 0 chr6 159800199 159800219 -22615023 + (TA)n Simple_repeat Simple_repeat 2 21 0 1770 158 7 0 chr6 159800219 159800517 -22614725 - AluSx SINE Alu -12 300 1 22 0 0 0 chr6 159800724 159800746 -22614496 + AT_rich Low_complexity Low_complexity 1 22 0 185 338 126 39 chr6 159800846 159801077 -22614165 - L2 LINE L2 -1679 1635 1385 189 0 0 0 chr6 159801221 159801242 -22614000 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 511 214 115 22 chr6 159801647 159801829 -22613413 + MIR SINE MIR 56 254 -8 1572 162 10 26 chr6 159802335 159802638 -22612604 - AluSx SINE Alu -13 299 2 2415 83 0 0 chr6 159803387 159803700 -22611542 - AluSq SINE Alu 0 313 1 23 78 0 0 chr6 159804231 159804282 -22610960 + GC_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr6 159804377 159804401 -22610841 + GC_rich Low_complexity Low_complexity 1 24 0 205 246 16 16 chr6 159804856 159804917 -22610325 + G-rich Low_complexity Low_complexity 4 64 0 34 0 0 0 chr6 159805207 159805241 -22610001 + GC_rich Low_complexity Low_complexity 1 34 0 853 164 58 12 chr6 159805667 159805838 -22609404 + AluJo SINE Alu 121 299 -13 450 257 21 7 chr6 159806069 159806213 -22609029 - L1MEc LINE L1 -5493 903 758 25 0 0 0 chr6 159806579 159806604 -22608638 + AT_rich Low_complexity Low_complexity 1 25 0 28 61 0 0 chr6 159806709 159806758 -22608484 + AT_rich Low_complexity Low_complexity 1 49 0 1575 232 101 19 chr6 159807198 159807723 -22607519 + L1MEc LINE L1 36 603 -5793 653 205 70 19 chr6 159807733 159807889 -22607353 + L1MA10 LINE L1 6169 6332 -2 2004 152 36 25 chr6 159808150 159808361 -22606881 - MLT1A1 LTR MaLR 0 365 146 2113 121 0 0 chr6 159808361 159808670 -22606572 - AluSg SINE Alu 0 309 1 2004 152 36 25 chr6 159808670 159808818 -22606424 - MLT1A1 LTR MaLR -219 146 1 297 297 0 0 chr6 159808899 159808973 -22606269 + MIR SINE MIR 189 262 0 248 286 71 10 chr6 159810229 159810327 -22604915 - MIR SINE MIR -34 228 125 1954 196 42 36 chr6 159810337 159810831 -22604411 - LOR1a LTR ERV1 0 497 1 447 278 30 30 chr6 159810845 159811014 -22604228 - L3 LINE CR1 -160 1417 1249 444 337 16 5 chr6 159811090 159811274 -22603968 + MIR SINE MIR 71 256 -6 5560 150 32 60 chr6 159811381 159811424 -22603818 - L1MA9 LINE L1 -1 6311 6268 1995 111 7 34 chr6 159811424 159811722 -22603520 + AluSg SINE Alu 1 290 -20 5560 150 32 60 chr6 159811722 159813376 -22601866 - L1MA9 LINE L1 -44 6268 4666 2213 124 3 0 chr6 159813376 159813674 -22601568 - AluSx SINE Alu -13 299 1 5560 150 32 60 chr6 159813674 159814050 -22601192 - L1MA9 LINE L1 -1646 4666 4281 760 144 17 8 chr6 159814061 159814179 -22601063 - AluJ SINE Alu -21 291 173 694 174 0 0 chr6 159814184 159814293 -22600949 - AluJ SINE Alu -202 110 2 6119 182 22 40 chr6 159814294 159815602 -22599640 - L1MA9 LINE L1 -1858 4288 3004 1196 199 128 45 chr6 159815602 159815939 -22599303 - MLT1A1 LTR MaLR 0 365 1 6119 182 22 40 chr6 159815939 159816023 -22599219 - L1MA9 LINE L1 -3142 3004 2920 692 282 15 46 chr6 159816024 159816210 -22599032 - L3 LINE CR1 -858 719 542 2196 91 20 13 chr6 159816210 159816508 -22598734 - AluSp SINE Alu -12 301 2 692 282 15 46 chr6 159816508 159816580 -22598662 - L3 LINE CR1 -1035 542 469 21 0 0 0 chr6 159816645 159816666 -22598576 + AT_rich Low_complexity Low_complexity 1 21 0 248 213 0 0 chr6 159817180 159817227 -22598015 + L1M4 LINE L1 4176 4222 -1924 352 231 51 34 chr6 159817243 159817360 -22597882 - L1MEc LINE L1 -5363 1496 1378 916 245 153 22 chr6 159817387 159817857 -22597385 - MLT1G LTR MaLR -28 562 1 395 270 13 3 chr6 159817877 159818031 -22597211 - L1MEc LINE L1 -5443 1511 1399 419 314 111 13 chr6 159818296 159818611 -22596631 - L1MEc LINE L1 -5915 1223 878 6713 180 19 53 chr6 159818630 159819207 -22596035 + L1P4 LINE L1 3804 4399 -1767 234 62 0 0 chr6 159819207 159819239 -22596003 + (CA)n Simple_repeat Simple_repeat 2 33 0 6713 180 19 53 chr6 159819239 159819901 -22595341 + L1P4 LINE L1 4399 4960 -1206 2198 128 0 0 chr6 159819901 159820205 -22595037 - AluSq SINE Alu -9 304 1 6713 180 19 53 chr6 159820205 159820752 -22594490 + L1P4 LINE L1 4960 5524 -642 4202 134 23 13 chr6 159822550 159823234 -22592008 + L1PA16 LINE L1 5476 6166 0 1651 188 3 19 chr6 159823353 159823662 -22591580 + AluJo SINE Alu 1 304 -8 2114 104 4 0 chr6 159824238 159824540 -22590702 + AluSx SINE Alu 3 305 0 208 247 0 41 chr6 159824851 159824924 -22590318 + CT-rich Low_complexity Low_complexity 3 72 0 536 173 0 0 chr6 159825016 159825097 -22590145 - AluJ/FLAM SINE Alu -230 82 2 619 105 0 0 chr6 159825130 159825216 -22590026 - AluY SINE Alu -18 293 208 242 346 106 11 chr6 159826806 159826994 -22588248 - L2 LINE L2 -193 3079 2874 1105 246 13 25 chr6 159826994 159827244 -22587998 - L1M4 LINE L1 -3147 2999 2751 2235 104 0 0 chr6 159827244 159827547 -22587695 - AluSx SINE Alu 0 305 3 1105 246 13 25 chr6 159827547 159827612 -22587630 - L1M4 LINE L1 -3395 2751 2687 940 88 8 0 chr6 159828775 159828900 -22586342 + AluSp SINE Alu 1 126 -187 470 157 0 0 chr6 159828968 159829038 -22586204 - MER75 DNA T2_type -444 70 1 213 39 0 0 chr6 159829524 159829550 -22585692 + (A)n Simple_repeat Simple_repeat 1 26 0 256 299 54 91 chr6 159829637 159829878 -22585364 - L2 LINE L2 -25 3247 3016 221 243 57 0 chr6 159832089 159832159 -22583083 + CT-rich Low_complexity Low_complexity 3 76 0 189 0 0 0 chr6 159832339 159832360 -22582882 + (TG)n Simple_repeat Simple_repeat 2 22 0 200 246 66 33 chr6 159832376 159832437 -22582805 - L2 LINE L2 0 3272 3210 857 129 0 30 chr6 159832455 159832587 -22582655 + FLAM_C SINE Alu 1 128 -5 13165 88 11 0 chr6 159832587 159835113 -22580129 - L1PA6 LINE L1 -4 6465 3899 6371 135 76 12 chr6 159835116 159836392 -22578850 - L1PA6 LINE L1 -4483 1978 620 950 233 127 30 chr6 159836632 159836962 -22578280 - MLT1A1 LTR MaLR -3 362 1 390 151 0 0 chr6 159837484 159837557 -22577685 + (TG)n Simple_repeat Simple_repeat 1 73 0 1960 151 3 7 chr6 159837885 159838189 -22577053 - AluJb SINE Alu -9 303 1 527 281 93 28 chr6 159839708 159840148 -22575094 + L2 LINE L2 2532 3014 -299 186 43 0 0 chr6 159840202 159840225 -22575017 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1824 162 7 0 chr6 159840392 159840682 -22574560 + AluSx SINE Alu 1 292 -20 1129 216 20 16 chr6 159840697 159840947 -22574295 - MLT1D LTR MaLR -2 503 253 515 253 120 12 chr6 159842746 159842771 -22572471 - MER34B LTR ERV1 -83 482 461 576 0 0 0 chr6 159842771 159842835 -22572407 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 515 253 120 12 chr6 159842835 159843074 -22572168 - MER34B LTR ERV1 -104 461 148 1418 269 13 36 chr6 159843119 159843670 -22571572 - L1M4 LINE L1 -2739 3643 3106 639 278 78 32 chr6 159843669 159844234 -22571008 - L1M4 LINE L1 -3769 2613 2029 * 1362 216 60 35 chr6 159844306 159844760 -22570482 + MLT1D LTR MaLR 41 504 -1 2303 88 10 0 chr6 159848207 159848501 -22566741 - AluSx SINE Alu -15 297 1 1502 124 97 0 chr6 159849109 159849335 -22565907 + AluY SINE Alu 1 248 -63 1850 117 12 4 chr6 159849480 159849729 -22565513 + AluSx SINE Alu 1 251 -61 1759 143 7 51 chr6 159849868 159850161 -22565081 - AluJo SINE Alu -30 282 3 261 0 0 0 chr6 159850392 159850421 -22564821 + (CA)n Simple_repeat Simple_repeat 2 30 0 2586 58 3 0 chr6 159850810 159851118 -22564124 + AluY SINE Alu 1 309 -2 198 0 0 0 chr6 159851328 159851350 -22563892 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2115 95 3 35 chr6 159851354 159851639 -22563603 - AluSx SINE Alu -36 276 1 22 0 0 0 chr6 159853179 159853201 -22562041 + AT_rich Low_complexity Low_complexity 1 22 0 236 200 0 0 chr6 159853681 159853726 -22561516 + L1MB8 LINE L1 6132 6176 -2 474 236 11 58 chr6 159853804 159853978 -22561264 + L1MC4 LINE L1 7844 8009 -33 1502 98 0 15 chr6 159854400 159854604 -22560638 - AluSg/x SINE Alu -7 303 103 2266 84 3 3 chr6 159854704 159854988 -22560254 + AluSg SINE Alu 3 286 -24 21 0 0 0 chr6 159854989 159855010 -22560232 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr6 159855432 159855475 -22559767 + AT_rich Low_complexity Low_complexity 1 43 0 2209 107 3 23 chr6 159855968 159856277 -22558965 + AluSx SINE Alu 3 305 -7 37 23 0 0 chr6 159856296 159856340 -22558902 + AT_rich Low_complexity Low_complexity 1 44 0 1788 120 4 11 chr6 159856755 159857021 -22558221 + AluJb SINE Alu 11 274 -38 254 28 0 28 chr6 159857026 159857062 -22558180 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 466 346 55 0 chr6 159857169 159857351 -22557891 + L2 LINE L2 2544 2735 -579 365 198 124 33 chr6 159857406 159857527 -22557715 + L2 LINE L2 3182 3313 0 2371 89 0 17 chr6 159857679 159857981 -22557261 - AluSc SINE Alu -12 297 1 2362 66 0 3 chr6 159858037 159858325 -22556917 - AluY SINE Alu -24 287 1 1575 196 32 0 chr6 159858397 159858677 -22556565 - AluJo SINE Alu -23 289 1 289 176 0 160 chr6 159858715 159858834 -22556408 - MER69A DNA AcHobo 0 177 78 2057 100 43 7 chr6 159858835 159859115 -22556127 + AluSx SINE Alu 1 290 -22 366 271 35 0 chr6 159859134 159859219 -22556023 - MER69A DNA AcHobo -88 89 2 23 0 0 0 chr6 159859256 159859279 -22555963 + AT_rich Low_complexity Low_complexity 1 23 0 2000 136 0 7 chr6 159859526 159859813 -22555429 - AluSx SINE Alu -2 310 26 180 0 0 0 chr6 159859819 159859839 -22555403 + (T)n Simple_repeat Simple_repeat 1 20 0 2409 93 3 0 chr6 159860554 159860865 -22554377 - AluSx SINE Alu 0 312 1 2298 123 0 0 chr6 159861480 159861790 -22553452 - AluSx SINE Alu -2 310 1 1980 134 7 7 chr6 159861889 159862180 -22553062 + AluSx SINE Alu 1 291 -21 2407 118 19 28 chr6 159862193 159862557 -22552685 + MER46B DNA MER2_type 1 236 0 432 287 70 9 chr6 159862591 159862706 -22552536 + L2 LINE L2 3137 3258 -14 2288 101 0 16 chr6 159863136 159863453 -22551789 - AluSx SINE Alu 0 312 1 394 300 33 0 chr6 159863549 159863669 -22551573 - HAL1 LINE L1 -55 2452 2329 594 232 79 119 chr6 159863758 159864309 -22550933 - HAL1 LINE L1 -368 2139 1429 1679 181 17 3 chr6 159864309 159864601 -22550641 - AluJo SINE Alu -16 296 1 594 232 79 119 chr6 159864601 159864730 -22550512 - HAL1 LINE L1 -1078 1429 1296 386 327 37 23 chr6 159864745 159864962 -22550280 - HAL1 LINE L1 -2133 374 155 253 184 13 40 chr6 159865359 159865435 -22549807 + L1ME3A LINE L1 6096 6169 -1 1825 135 24 35 chr6 159865453 159865742 -22549500 - AluJb SINE Alu -15 297 12 1436 175 32 8 chr6 159865982 159866234 -22549008 - AluJo SINE Alu -54 258 1 2517 77 0 0 chr6 159866523 159866836 -22548406 + AluSq SINE Alu 1 313 0 368 158 0 0 chr6 159867298 159867355 -22547887 + L1 LINE L1 4881 4937 -1209 648 108 0 0 chr6 159867501 159867584 -22547658 - AluS SINE Alu -229 84 2 2369 87 10 0 chr6 159868425 159868723 -22546519 - AluSq SINE Alu -12 301 1 2319 99 0 0 chr6 159868995 159869299 -22545943 - AluSc SINE Alu -5 304 1 780 234 105 51 chr6 159869308 159869796 -22545446 + L1ME LINE L1 4899 5443 -721 2272 95 0 7 chr6 159870455 159870750 -22544492 - AluSg SINE Alu -11 299 7 1824 151 0 26 chr6 159870827 159871138 -22544104 + AluJb SINE Alu 10 312 0 35 71 0 0 chr6 159871150 159871220 -22544022 + AT_rich Low_complexity Low_complexity 1 70 0 238 338 42 84 chr6 159871228 159871309 -22543933 + MIR SINE MIR 29 112 -150 2410 88 0 0 chr6 159871309 159871604 -22543638 - AluSx SINE Alu -17 295 1 238 338 42 84 chr6 159871604 159871759 -22543483 + MIR SINE MIR 112 255 -7 427 262 0 39 chr6 159871949 159872052 -22543190 - L2 LINE L2 -25 3288 3190 1858 122 11 0 chr6 159872647 159872910 -22542332 - AluSq SINE Alu -47 266 1 204 125 0 0 chr6 159873098 159873130 -22542112 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 809 285 7 46 chr6 159873167 159873451 -22541791 + MLT1K LTR MaLR 315 587 -1 1087 94 7 0 chr6 159874092 159874230 -22541012 - AluSp SINE Alu -174 139 1 2225 104 0 16 chr6 159874261 159874570 -22540672 + AluSg1 SINE Alu 1 304 -5 2861 203 61 85 chr6 159874612 159875424 -22539818 + L1MC4 LINE L1 7033 7863 -179 2286 62 14 27 chr6 159875424 159875716 -22539526 + AluY SINE Alu 1 288 -23 2861 203 61 85 chr6 159875716 159875782 -22539460 + L1MC4 LINE L1 7863 7929 -113 258 32 0 0 chr6 159875782 159875813 -22539429 + (CA)n Simple_repeat Simple_repeat 2 32 0 2861 203 61 85 chr6 159875813 159875968 -22539274 + L1MC4 LINE L1 7929 8042 0 2303 72 17 3 chr6 159875974 159876267 -22538975 + AluSx SINE Alu 1 297 -15 1796 29 0 45 chr6 159876304 159876550 -22538692 + SVA Other Other 3 237 -1149 5190 23 0 0 chr6 159876708 159877266 -22537976 + SVA Other Other 829 1386 0 26 0 0 0 chr6 159877291 159877317 -22537925 + AT_rich Low_complexity Low_complexity 1 26 0 891 227 96 73 chr6 159877426 159877914 -22537328 + L1MC5 LINE L1 7389 7887 -155 1748 152 28 3 chr6 159877914 159878197 -22537045 + AluJo SINE Alu 6 295 -17 891 227 96 73 chr6 159878197 159878315 -22536927 + L1MC5 LINE L1 7887 8001 -41 1679 269 75 74 chr6 159878635 159878678 -22536564 - L1MC4 LINE L1 -451 7591 7550 1386 210 17 37 chr6 159878678 159878978 -22536264 + AluJo SINE Alu 1 294 -18 1679 269 75 74 chr6 159878978 159879242 -22536000 - L1MC4 LINE L1 -492 7550 7288 2055 128 3 0 chr6 159879242 159879530 -22535712 + AluSg SINE Alu 1 289 -21 1679 269 75 74 chr6 159879530 159879669 -22535573 - L1MC4 LINE L1 -754 7288 7151 813 155 8 0 chr6 159879669 159879798 -22535444 - FLAM_C SINE Alu -3 130 1 1679 269 75 74 chr6 159879798 159880202 -22535040 - L1MC4 LINE L1 -891 7151 6738 2086 118 75 29 chr6 159880597 159880945 -22534297 + L1MB2 LINE L1 5806 6169 -2 240 138 103 17 chr6 159880957 159881015 -22534227 + L1MB7 LINE L1 5267 5329 -817 913 130 0 55 chr6 159881017 159881148 -22534094 + FLAM_C SINE Alu 1 125 -187 2387 78 0 37 chr6 159881148 159881469 -22533773 + AluSg SINE Alu 1 309 -1 913 130 0 55 chr6 159881469 159881483 -22533759 + FLAM_C SINE Alu 125 138 -174 4535 157 27 30 chr6 159881484 159882318 -22532924 + L1MB7 LINE L1 5317 6149 -35 1915 160 3 10 chr6 159882318 159882618 -22532624 - AluJb SINE Alu -14 298 1 4535 157 27 30 chr6 159882618 159882644 -22532598 + L1MB7 LINE L1 6149 6174 -10 2072 124 3 7 chr6 159882848 159883147 -22532095 - AluSq SINE Alu -15 298 1 566 241 68 101 chr6 159883184 159883594 -22531648 - LTR15 LTR ERV1 0 534 183 1573 193 13 16 chr6 159883836 159884141 -22531101 + AluJo SINE Alu 1 304 -8 2167 135 0 0 chr6 159884146 159884449 -22530793 + AluSx SINE Alu 1 303 -9 2155 145 0 0 chr6 159884499 159884910 -22530332 + AluSx SINE Alu 2 412 0 764 263 81 88 chr6 159885205 159885243 -22529999 - L1MC/D LINE L1 -1992 5816 5779 2516 137 3 3 chr6 159885243 159885608 -22529634 + MER47A DNA MER2_type 2 366 0 764 263 81 88 chr6 159885608 159885963 -22529279 - L1MC/D LINE L1 -2029 5779 5423 779 188 8 8 chr6 159885963 159886091 -22529151 + FLAM_C SINE Alu 1 128 -5 1966 102 0 89 chr6 159886098 159886422 -22528820 + AluSx SINE Alu 1 295 -17 764 263 81 88 chr6 159886422 159886499 -22528743 - L1MC/D LINE L1 -2391 5417 5340 2282 99 3 0 chr6 159886504 159886797 -22528445 - AluSp SINE Alu -19 294 1 1693 158 14 18 chr6 159886968 159887253 -22527989 - AluJo SINE Alu -28 284 1 2182 108 3 23 chr6 159887530 159887668 -22527574 + AluSq SINE Alu 1 140 -173 2447 57 3 3 chr6 159887668 159887969 -22527273 + AluY SINE Alu 1 301 -10 2182 108 3 23 chr6 159887969 159888136 -22527106 + AluSq SINE Alu 140 300 -13 2256 113 0 3 chr6 159888136 159888445 -22526797 + AluSg SINE Alu 1 308 -2 793 227 7 20 chr6 159888521 159888694 -22526548 + FRAM SINE Alu 1 171 0 2215 81 0 3 chr6 159888996 159889324 -22525918 + AluY SINE Alu 1 327 0 2547 53 7 0 chr6 159889636 159889939 -22525303 - AluY SINE Alu -6 305 1 22 35 0 0 chr6 159890730 159890759 -22524483 + AT_rich Low_complexity Low_complexity 1 29 0 1894 150 3 7 chr6 159890857 159891151 -22524091 + AluSx SINE Alu 1 293 -19 25 75 0 0 chr6 159891162 159891215 -22524027 + AT_rich Low_complexity Low_complexity 1 53 0 404 324 256 23 chr6 159891534 159891659 -22523583 - L2 LINE L2 -575 2739 2644 2381 78 14 0 chr6 159891659 159891953 -22523289 - AluY SINE Alu -13 298 1 2171 105 10 0 chr6 159891953 159892247 -22522995 - AluY SINE Alu -13 298 1 404 324 256 23 chr6 159892247 159892738 -22522504 - L2 LINE L2 -669 2645 1978 1177 205 67 64 chr6 159892778 159893061 -22522181 + AluJo SINE Alu 1 284 -18 2339 104 3 0 chr6 159893061 159893369 -22521873 + AluSx SINE Alu 1 309 -3 2085 132 0 7 chr6 159893753 159894057 -22521185 + AluSx SINE Alu 6 307 -5 1181 145 6 0 chr6 159894058 159894230 -22521012 + AluSg/x SINE Alu 133 305 -5 1817 176 3 3 chr6 159894283 159894579 -22520663 + AluJo SINE Alu 1 296 -16 2365 102 0 0 chr6 159894581 159894886 -22520356 + AluSx SINE Alu 1 305 -7 1920 159 3 7 chr6 159894921 159895222 -22520020 + AluJb SINE Alu 1 300 -12 557 163 23 0 chr6 159895316 159895402 -22519840 + AluJ/FLAM SINE Alu 2 89 -223 1169 227 60 43 chr6 159895407 159895449 -22519793 + L1ME1 LINE L1 5808 5848 -318 2230 111 7 0 chr6 159895449 159895746 -22519496 - AluSg SINE Alu -11 299 1 1169 227 60 43 chr6 159895746 159895946 -22519296 + L1ME1 LINE L1 5848 6060 -106 1113 228 42 0 chr6 159895946 159896161 -22519081 - MER58A DNA MER1_type 0 224 1 1169 227 60 43 chr6 159896161 159896265 -22518977 + L1ME1 LINE L1 6060 6161 -5 540 265 6 48 chr6 159896278 159896444 -22518798 + HAL1b LINE L1 487 645 -703 316 320 48 24 chr6 159896480 159896686 -22518556 + HAL1b LINE L1 718 928 -420 234 111 0 0 chr6 159896686 159896694 -22518548 + (A)n Simple_repeat Simple_repeat 1 8 -37 2128 125 3 0 chr6 159896694 159896989 -22518253 - AluSq SINE Alu -16 297 2 234 111 0 0 chr6 159896989 159897025 -22518217 + (A)n Simple_repeat Simple_repeat 7 45 0 2673 35 0 10 chr6 159897287 159897597 -22517645 - AluY SINE Alu -4 307 1 2255 57 11 4 chr6 159897604 159897916 -22517326 - AluY SINE Alu 0 314 1 1366 197 42 28 chr6 159897919 159898208 -22517034 - AluJo SINE Alu -19 293 1 415 315 119 8 chr6 159898244 159898479 -22516763 - MIR SINE MIR 0 262 2 229 327 0 0 chr6 159898582 159898637 -22516605 - L3 LINE CR1 -4 1573 1519 407 338 161 37 chr6 159898691 159899096 -22516146 - L3 LINE CR1 -160 1417 963 233 93 0 72 chr6 159899358 159899455 -22515787 + (TA)n Simple_repeat Simple_repeat 2 91 0 661 71 3 73 chr6 159899469 159899851 -22515391 + (TA)n Simple_repeat Simple_repeat 1 354 0 781 71 0 58 chr6 159899862 159900175 -22515067 + (TA)n Simple_repeat Simple_repeat 1 294 0 308 181 83 14 chr6 159900852 159900924 -22514318 + HAL1b LINE L1 757 833 -515 688 261 79 8 chr6 159901103 159901344 -22513898 + HAL1 LINE L1 2249 2506 -1 207 0 0 0 chr6 159901394 159901417 -22513825 + (CA)n Simple_repeat Simple_repeat 2 24 0 275 189 302 0 chr6 159901495 159901601 -22513641 - HAL1 LINE L1 -194 2313 2176 252 0 0 0 chr6 159901620 159901648 -22513594 + (CA)n Simple_repeat Simple_repeat 2 29 0 701 291 115 50 chr6 159901700 159901804 -22513438 + MLT1J LTR MaLR 106 202 -309 2272 104 3 0 chr6 159901804 159902103 -22513139 - AluSc SINE Alu -9 300 1 701 291 115 50 chr6 159902103 159902362 -22512880 + MLT1J LTR MaLR 202 493 -18 2300 88 0 0 chr6 159902880 159903191 -22512051 + AluSq SINE Alu 1 311 0 2326 91 7 0 chr6 159903500 159903798 -22511444 + AluSq SINE Alu 1 300 -13 2379 104 0 3 chr6 159904165 159904474 -22510768 + AluSg SINE Alu 1 308 -2 2181 127 0 3 chr6 159904491 159904790 -22510452 + AluSx SINE Alu 1 298 -14 767 305 191 14 chr6 159904836 159905266 -22509976 - L3 LINE CR1 -3 1574 1069 765 212 24 0 chr6 159905370 159905491 -22509751 + MER3 DNA MER1_type 9 90 -72 1977 129 13 6 chr6 159905491 159905802 -22509440 - AluSq SINE Alu 0 313 1 765 212 24 0 chr6 159905802 159905845 -22509397 + MER3 DNA MER1_type 90 130 -32 1668 161 3 52 chr6 159906010 159906334 -22508908 + AluJo SINE Alu 1 308 -4 480 208 71 90 chr6 159906447 159906702 -22508540 + L2 LINE L2 2278 2527 -787 * 571 264 264 7 chr6 159906682 159906977 -22508265 + L2 LINE L2 2941 3311 -2 438 247 0 0 chr6 159907125 159907210 -22508032 - MER44D DNA MER2_type 0 605 521 1729 155 0 67 chr6 159907230 159907546 -22507696 - AluJb SINE Alu -17 295 1 286 158 0 53 chr6 159907583 159907640 -22507602 - MER47A DNA MER2_type -312 54 1 2616 160 18 13 chr6 159907645 159908102 -22507140 - MER44D DNA MER2_type -90 515 2 696 186 106 0 chr6 159908390 159908551 -22506691 - MER3 DNA MER1_type 0 209 32 532 178 303 59 chr6 159908668 159908820 -22506422 + MER5A DNA MER1_type 1 189 0 221 0 35 0 chr6 159909006 159909035 -22506207 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2326 96 7 0 chr6 159909039 159909332 -22505910 + AluSp SINE Alu 1 295 -18 2404 88 0 3 chr6 159910171 159910467 -22504775 + AluSq SINE Alu 1 295 -18 1313 175 47 61 chr6 159910491 159910788 -22504454 + AluJo SINE Alu 1 293 -19 2342 102 0 0 chr6 159910890 159911193 -22504049 + AluSg SINE Alu 1 303 -7 2248 85 0 3 chr6 159911341 159911635 -22503607 - AluSq SINE Alu -20 293 1 294 298 12 0 chr6 159912845 159912929 -22502313 + (CCG)n Simple_repeat Simple_repeat 3 87 0 2823 29 0 0 chr6 159913833 159914142 -22501100 - AluY SINE Alu -2 309 1 2261 96 10 26 chr6 159914324 159914636 -22500606 - AluSg SINE Alu -3 307 1 1902 120 14 34 chr6 159915094 159915385 -22499857 + AluSx SINE Alu 13 297 -15 261 264 104 19 chr6 159916801 159916907 -22498335 - MIR3 SINE MIR -40 168 54 181 364 110 0 chr6 159916937 159917055 -22498187 - MIR SINE MIR -13 249 119 284 339 69 16 chr6 159917055 159917244 -22497998 - MIR SINE MIR -7 255 57 2268 112 0 0 chr6 159917247 159917551 -22497691 - AluY SINE Alu -7 304 1 956 93 73 26 chr6 159917616 159917796 -22497446 + AluSp SINE Alu 148 313 0 2180 124 0 0 chr6 159917821 159918112 -22497130 - AluSg SINE Alu -17 293 3 2263 107 7 0 chr6 159918118 159918426 -22496816 - AluSg SINE Alu 0 310 1 564 152 0 38 chr6 159918426 159918531 -22496711 - AluSg/x SINE Alu -4 305 205 970 135 7 0 chr6 159918537 159918678 -22496564 - AluJo SINE Alu -170 142 1 2247 88 17 7 chr6 159919058 159919352 -22495890 - AluSp SINE Alu -16 297 1 2038 130 0 0 chr6 159919449 159919768 -22495474 - AluSx SINE Alu 0 327 9 1384 135 5 23 chr6 159920292 159920344 -22494898 + AluSg/x SINE Alu 85 136 -176 2233 107 3 0 chr6 159920344 159920643 -22494599 + AluSp SINE Alu 1 300 -13 1384 135 5 23 chr6 159920643 159920805 -22494437 + AluSg/x SINE Alu 136 295 -17 1995 138 0 3 chr6 159920866 159921155 -22494087 + AluSc SINE Alu 2 289 -20 2050 144 0 7 chr6 159921196 159921494 -22493748 + AluSx SINE Alu 1 296 -16 231 298 123 0 chr6 159921901 159922015 -22493227 + MER5B DNA MER1_type 4 131 -47 2186 117 0 0 chr6 159922023 159922321 -22492921 - AluSc SINE Alu -11 298 1 2010 145 30 0 chr6 159922369 159922666 -22492576 - AluJb SINE Alu -5 307 2 2192 122 3 0 chr6 159923083 159923387 -22491855 + AluSx SINE Alu 1 305 -7 2098 93 48 0 chr6 159923392 159923682 -22491560 + AluSp SINE Alu 1 304 -9 1690 120 0 0 chr6 159924679 159924904 -22490338 + AluSx SINE Alu 1 225 -87 867 118 0 24 chr6 159924917 159925044 -22490198 + AluSp/q SINE Alu 172 295 -18 1216 209 80 28 chr6 159925106 159925368 -22489874 + AluJb SINE Alu 1 281 -31 2066 133 24 0 chr6 159925368 159925661 -22489581 - AluSx SINE Alu -12 300 1 1216 209 80 28 chr6 159925661 159925685 -22489557 + AluJb SINE Alu 281 302 -10 1435 192 42 7 chr6 159925687 159925974 -22489268 + AluJb SINE Alu 1 297 -15 2292 97 3 0 chr6 159926374 159926672 -22488570 - AluSp SINE Alu -12 301 3 1671 126 44 58 chr6 159926672 159926965 -22488277 - AluJb SINE Alu -8 304 16 749 126 0 25 chr6 159927049 159927168 -22488074 - FRAM SINE Alu -7 169 54 274 174 0 0 chr6 159927214 159927260 -22487982 - L1ME LINE L1 -459 5662 5617 1019 204 82 59 chr6 159927313 159927583 -22487659 + AluJo SINE Alu 1 276 -36 2296 110 0 0 chr6 159927854 159928154 -22487088 - AluSx SINE Alu -12 300 1 1326 171 16 112 chr6 159928161 159928482 -22486760 - AluJb SINE Alu -22 290 1 2391 83 3 0 chr6 159928546 159928848 -22486394 + AluSp SINE Alu 1 303 -10 1810 180 0 7 chr6 159928924 159929213 -22486029 + AluJb SINE Alu 1 287 -25 633 174 0 30 chr6 159929630 159929762 -22485480 + FLAM_C SINE Alu 14 141 -2 2196 107 7 3 chr6 159929806 159930104 -22485138 - AluSq SINE Alu -12 301 3 2316 110 0 3 chr6 159930107 159930406 -22484836 - AluSq SINE Alu -15 298 1 1969 108 30 0 chr6 159930461 159930730 -22484512 - AluSx SINE Alu -3 309 33 2322 99 0 10 chr6 159931090 159931392 -22483850 - AluSx SINE Alu -13 299 1 1978 147 0 10 chr6 159931392 159931685 -22483557 - AluSx SINE Alu -22 290 1 1551 204 0 25 chr6 159931708 159932022 -22483220 - AluJo SINE Alu -6 306 1 2340 101 3 0 chr6 159932361 159932658 -22482584 + AluSp SINE Alu 1 298 -15 392 312 36 7 chr6 159932800 159932938 -22482304 - L2 LINE L2 0 3313 3172 257 255 224 0 chr6 159932938 159933036 -22482206 - LTR33A LTR ERVL 0 523 404 399 274 115 57 chr6 159933214 159933371 -22481871 - LTR33A LTR ERVL -363 160 39 2367 92 0 3 chr6 159933378 159933682 -22481560 + AluSx SINE Alu 1 303 -9 544 256 173 7 chr6 159933700 159934018 -22481224 - L2 LINE L2 -175 3138 2776 328 153 51 0 chr6 159934706 159934765 -22480477 + L2 LINE L2 3210 3271 -1 21 82 0 0 chr6 159934975 159935024 -22480218 + AT_rich Low_complexity Low_complexity 1 49 0 2349 86 27 0 chr6 159936252 159936544 -22478698 - AluSc SINE Alu -9 300 1 2168 106 18 0 chr6 159937074 159937358 -22477884 - AluSq SINE Alu -24 289 1 880 49 32 32 chr6 159937359 159937482 -22477760 - AluSq/x SINE Alu -179 134 12 362 291 77 87 chr6 159937659 159937780 -22477462 - L3 LINE CR1 -3 1574 1454 2135 106 3 17 chr6 159937780 159938073 -22477169 + AluSq SINE Alu 1 289 -24 362 291 77 87 chr6 159938073 159938147 -22477095 - L3 LINE CR1 -123 1454 1381 295 385 74 28 chr6 159938458 159938741 -22476501 + L2 LINE L2 2967 3262 -10 2183 92 27 10 chr6 159938797 159939089 -22476153 - AluSx SINE Alu -15 297 1 1794 178 0 3 chr6 159939446 159939732 -22475510 - AluJo SINE Alu -27 285 1 2139 94 35 0 chr6 159940125 159940411 -22474831 + AluSx SINE Alu 1 296 -16 1820 129 3 39 chr6 159940414 159940700 -22474542 + AluSx SINE Alu 1 276 -36 208 139 0 0 chr6 159940701 159940737 -22474505 + (TTAAA)n Simple_repeat Simple_repeat 3 38 0 922 157 45 300 chr6 159940821 159940978 -22474264 + L1MC3 LINE L1 6665 6860 -925 1745 151 26 23 chr6 159940978 159941116 -22474126 + AluJo SINE Alu 3 139 -173 2267 82 10 3 chr6 159941116 159941409 -22473833 + AluSp SINE Alu 2 296 -17 1745 151 26 23 chr6 159941409 159941575 -22473667 + AluJo SINE Alu 139 308 -4 922 157 45 300 chr6 159941575 159941753 -22473489 + L1MC3 LINE L1 6860 7082 -703 1716 148 36 52 chr6 159941753 159942058 -22473184 - AluJb SINE Alu -2 310 11 922 157 45 300 chr6 159942058 159942082 -22473160 + L1MC3 LINE L1 7082 7110 -675 342 0 0 0 chr6 159942082 159942120 -22473122 + (CA)n Simple_repeat Simple_repeat 2 39 0 922 157 45 300 chr6 159942120 159942242 -22473000 + L1MC3 LINE L1 7110 6935 -850 2232 112 7 7 chr6 159942242 159942547 -22472695 - AluSx SINE Alu -7 305 1 922 157 45 300 chr6 159942547 159942729 -22472513 + L1MC3 LINE L1 6934 7161 -624 2511 46 0 7 chr6 159943542 159943848 -22471394 - AluY SINE Alu -7 304 1 664 205 16 0 chr6 159946478 159946600 -22468642 - FLAM_A SINE Alu -9 124 1 202 184 26 0 chr6 159946776 159946814 -22468428 - MIR SINE MIR -209 53 15 180 300 44 22 chr6 159946798 159946888 -22468354 - L2 LINE L2 -538 2776 2685 * 654 215 33 23 chr6 159947028 159947215 -22468027 + L1ME LINE L1 5526 5684 -437 322 210 41 38 chr6 159947361 159947444 -22467798 + L1ME LINE L1 5701 5742 -379 2103 90 22 0 chr6 159947444 159947769 -22467473 + AluSx SINE Alu 1 331 0 322 210 41 38 chr6 159947769 159947816 -22467426 + L1ME LINE L1 5742 5787 -334 537 249 46 20 chr6 159948044 159948241 -22467001 - HsTC2 DNA Tc2 -1027 871 670 597 147 0 49 chr6 159948430 159948532 -22466710 + FLAM_C SINE Alu 28 124 -19 1885 136 39 23 chr6 159948539 159948847 -22466395 + AluSq SINE Alu 1 313 0 2295 112 0 6 chr6 159948849 159949162 -22466080 + AluSq SINE Alu 1 311 -2 2292 97 0 3 chr6 159949217 159949516 -22465726 + AluSx SINE Alu 3 300 -12 1709 184 0 3 chr6 159949791 159950099 -22465143 - AluJo SINE Alu 0 307 1 900 103 0 29 chr6 159950160 159950296 -22464946 + FLAM_C SINE Alu 1 132 -1 2269 65 14 4 chr6 159950314 159950618 -22464624 + AluSp SINE Alu 1 307 0 235 239 28 0 chr6 159950824 159950895 -22464347 + CT-rich Low_complexity Low_complexity 1 73 0 2288 99 0 3 chr6 159951256 159951548 -22463694 - AluSg SINE Alu -19 291 1 256 154 0 0 chr6 159952224 159952263 -22462979 - MLT1J2-int LTR MaLR -1327 44 6 546 161 0 0 chr6 159952282 159952369 -22462873 + MER89 LTR ERV1 1 87 -472 * 817 189 35 0 chr6 159952347 159952490 -22462752 + MER89 LTR ERV1 200 347 -212 3892 145 30 122 chr6 159952521 159952837 -22462405 - MER4D LTR ERV1 -37 835 492 2348 105 0 0 chr6 159952837 159953142 -22462100 + AluSg SINE Alu 1 305 -5 3892 145 30 122 chr6 159953142 159953744 -22461498 - MER4D LTR ERV1 -380 492 1 1249 161 5 18 chr6 159953746 159953964 -22461278 + MER89 LTR ERV1 345 559 0 444 257 145 33 chr6 159953971 159954233 -22461009 - MLT1J2 LTR MaLR -19 422 114 1707 94 0 0 chr6 159954376 159954599 -22460643 - AluSg/x SINE Alu -10 302 80 556 182 0 0 chr6 159954843 159954942 -22460300 + FLAM_C SINE Alu 44 142 -1 513 264 6 18 chr6 159954942 159955109 -22460133 - L1MC5 LINE L1 -77 7884 7720 459 202 0 0 chr6 159955364 159955448 -22459794 - AluJ/FLAM SINE Alu -224 88 5 2394 89 0 3 chr6 159955497 159955799 -22459443 + AluSg SINE Alu 1 301 -9 1258 224 178 13 chr6 159955881 159956279 -22458963 - MLT1D LTR MaLR -2 503 40 1607 160 14 38 chr6 159956290 159956578 -22458664 - AluJb SINE Alu -19 293 13 2606 67 3 0 chr6 159956597 159956909 -22458333 - AluSp SINE Alu 0 313 1 180 111 0 0 chr6 159957185 159957212 -22458030 + (T)n Simple_repeat Simple_repeat 1 27 0 430 204 11 11 chr6 160007409 160007502 -22407740 + MER41E LTR ERV1 419 511 -1 311 250 56 0 chr6 160007504 160007612 -22407630 + L1MC4a LINE L1 5354 5467 -703 433 374 112 11 chr6 160008976 160009332 -22405910 + L1MC4a LINE L1 5596 5987 -1821 1040 194 30 87 chr6 160010017 160010352 -22404890 - MER33 DNA MER1_type -8 316 1 1933 156 0 0 chr6 160010374 160010657 -22404585 + AluSx SINE Alu 2 308 0 217 0 0 0 chr6 160010657 160010681 -22404561 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 370 284 16 0 chr6 160011917 160012044 -22403198 + HAL1 LINE L1 1497 1625 -882 2167 209 25 25 chr6 160012046 160012576 -22402666 - MLT1E2 LTR MaLR -8 618 89 226 301 39 39 chr6 160012444 160012600 -22402642 - MLT2C1 LTR ERVL -172 225 70 * 214 227 0 61 chr6 160012656 160012722 -22402520 + C-rich Low_complexity Low_complexity 4 65 0 350 273 67 95 chr6 160013332 160013424 -22401818 + L1MEc LINE L1 2146 2162 -4053 1993 132 7 13 chr6 160013424 160013727 -22401515 + AluJo SINE Alu 1 301 -11 350 273 67 95 chr6 160013727 160013887 -22401355 + L1MEc LINE L1 2162 2325 -3890 2100 121 0 7 chr6 160014539 160014836 -22400406 + AluSg SINE Alu 1 295 -15 1943 158 7 7 chr6 160015036 160015346 -22399896 + AluSx SINE Alu 1 310 -2 187 328 0 0 chr6 160015832 160015896 -22399346 - MIR SINE MIR -64 144 81 273 390 38 12 chr6 160020024 160020491 -22394751 - HERV16 LTR ERVL -2046 3608 3123 357 264 0 0 chr6 160020517 160020604 -22394638 + MER58B DNA MER1_type 220 306 -35 471 346 53 14 chr6 160020608 160021002 -22394240 - HERV16 LTR ERVL -2848 2148 1743 541 352 72 14 chr6 160021226 160021715 -22393527 - HERV16 LTR ERVL -3540 1456 940 213 94 0 0 chr6 160022937 160022969 -22392273 + (TG)n Simple_repeat Simple_repeat 2 33 0 1297 245 10 3 chr6 160025342 160025640 -22389602 - AluJo SINE Alu -9 303 4 24 32 0 0 chr6 160025646 160025677 -22389565 + AT_rich Low_complexity Low_complexity 1 31 0 4192 198 45 6 chr6 160025701 160027015 -22388227 + L1PA16 LINE L1 4802 6165 -1 1754 274 167 12 chr6 160027751 160028506 -22386736 + L1M4 LINE L1 291 1162 -5380 349 239 174 0 chr6 160028614 160028723 -22386519 + MLT1A1 LTR MaLR 2 129 -236 2166 125 0 0 chr6 160028730 160029011 -22386231 + AluSq SINE Alu 1 281 -32 1004 87 0 33 chr6 160029015 160029199 -22386043 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 270 42 62 0 chr6 160029199 160029247 -22385995 + GA-rich Low_complexity Low_complexity 4 54 0 1104 245 28 11 chr6 160029257 160029729 -22385513 + L1MC4a LINE L1 5042 5530 -743 780 212 32 87 chr6 160029800 160030111 -22385131 + MLT2B3 LTR ERVL 1 294 -260 532 298 61 29 chr6 160030190 160030532 -22384710 - HERV16 LTR ERVL -3642 1354 1002 33 25 0 0 chr6 160032190 160032230 -22383012 + AT_rich Low_complexity Low_complexity 1 40 0 237 98 0 0 chr6 160032669 160032710 -22382532 + (TG)n Simple_repeat Simple_repeat 1 41 0 23 54 0 0 chr6 160033344 160033381 -22381861 + AT_rich Low_complexity Low_complexity 1 37 0 4380 205 25 13 chr6 160033562 160033838 -22381404 + L1PA16 LINE L1 4458 4729 -1437 2712 36 0 3 chr6 160033838 160034145 -22381097 + AluY SINE Alu 2 307 -4 288 0 0 0 chr6 160034145 160034177 -22381065 + (TA)n Simple_repeat Simple_repeat 2 33 0 4380 205 25 13 chr6 160034177 160034892 -22380350 + L1PA16 LINE L1 4729 5434 -732 2555 58 7 0 chr6 160034892 160035201 -22380041 - AluY SINE Alu 0 311 1 4380 205 25 13 chr6 160035201 160035895 -22379347 + L1PA16 LINE L1 5434 6164 -2 556 228 60 6 chr6 160036997 160037164 -22378078 - MER119 DNA MER1_type -38 545 370 180 0 0 0 chr6 160038039 160038059 -22377183 + (T)n Simple_repeat Simple_repeat 1 20 0 311 363 54 0 chr6 160038571 160038739 -22376503 + L1MC4a LINE L1 5753 5929 -1879 489 183 11 0 chr6 160039466 160039559 -22375683 + FRAM SINE Alu 54 147 -29 290 167 0 0 chr6 160039579 160039639 -22375603 - L1MB2 LINE L1 -4 6167 6108 1009 215 64 103 chr6 160039743 160039813 -22375429 - MLT1D LTR MaLR 0 505 434 1787 131 41 0 chr6 160039813 160040104 -22375138 + AluSc SINE Alu 3 304 0 1009 215 64 103 chr6 160040104 160040529 -22374713 - MLT1D LTR MaLR -71 434 28 537 222 48 8 chr6 160040664 160040790 -22374452 + FRAM SINE Alu 1 124 -52 504 173 0 0 chr6 160040792 160040902 -22374340 + AluJo/FRAM SINE Alu 203 312 0 996 110 0 15 chr6 160041001 160041137 -22374105 + AluSp SINE Alu 1 134 -179 293 271 125 7 chr6 160041137 160041322 -22373920 + L1MEc LINE L1 2324 2499 -3885 671 212 15 0 chr6 160041372 160041504 -22373738 - FLAM_C SINE Alu -8 135 2 599 260 58 43 chr6 160041557 160041903 -22373339 + L1MEc LINE L1 3105 3455 -2927 3731 145 58 49 chr6 160042548 160042844 -22372398 + LTR19C LTR ERV1 1 293 -486 2333 105 0 0 chr6 160042844 160043148 -22372094 - AluSq SINE Alu -9 304 1 3731 145 58 49 chr6 160043148 160043623 -22371619 + LTR19C LTR ERV1 293 779 0 1166 108 46 5 chr6 160044768 160044962 -22370280 - LTR19C LTR ERV1 -577 202 1 942 292 196 8 chr6 160045033 160045537 -22369705 - L1M4 LINE L1 -5653 889 291 4558 208 39 21 chr6 160046268 160048158 -22367084 - L1PA16 LINE L1 -3 6163 4243 2224 115 0 10 chr6 160048158 160048463 -22366779 - AluSg SINE Alu -8 302 1 4558 208 39 21 chr6 160048463 160048585 -22366657 - L1PA16 LINE L1 -1923 4243 4125 297 298 48 12 chr6 160050224 160050392 -22364850 - L1MC4 LINE L1 -177 7865 7692 265 362 19 0 chr6 160050795 160051002 -22364240 - L1ME LINE L1 -536 5634 5424 1481 209 10 7 chr6 160051654 160051956 -22363286 + AluJo SINE Alu 4 306 -6 276 77 0 0 chr6 160054281 160054320 -22360922 + (CA)n Simple_repeat Simple_repeat 2 40 0 525 346 82 22 chr6 160055605 160056094 -22359148 + HERV16 LTR ERVL 940 1457 -3539 369 354 72 10 chr6 160056317 160056694 -22358548 + HERV16 LTR ERVL 1743 2145 -3340 351 274 38 0 chr6 160056710 160056816 -22358426 - MER58B DNA MER1_type -35 306 197 285 384 27 10 chr6 160056823 160057115 -22358127 + HERV16 LTR ERVL 3123 3419 -2066 198 143 0 0 chr6 160058774 160058809 -22356433 + (CCCCG)n Simple_repeat Simple_repeat 3 37 0 194 313 0 0 chr6 160060339 160060403 -22354839 + MIR SINE MIR 81 144 -64 2544 38 0 0 chr6 160060890 160061206 -22354036 - L1PA5 LINE L1 0 6154 5839 2146 133 0 0 chr6 160061206 160061500 -22353742 - AluSx SINE Alu -18 294 1 1840 159 7 23 chr6 160061720 160062029 -22353213 - AluSg SINE Alu -2 308 5 320 298 101 19 chr6 160062679 160062837 -22352405 - L1M4 LINE L1 -3865 2281 2111 1985 125 13 7 chr6 160062837 160063140 -22352102 - AluJo SINE Alu -5 307 3 2152 219 25 21 chr6 160063997 160064523 -22350719 + MLT1E2 LTR MaLR 91 618 -8 374 284 16 0 chr6 160064525 160064652 -22350590 - HAL1 LINE L1 -882 1625 1497 2036 144 3 3 chr6 160065829 160066127 -22349115 - AluSx SINE Alu -13 299 2 1053 209 21 78 chr6 160066149 160066484 -22348758 + MER33 DNA MER1_type 1 316 -8 234 354 88 15 chr6 160067237 160067511 -22347731 - L1MC/D LINE L1 -1901 5907 5614 286 252 54 0 chr6 160068888 160068999 -22346243 - L1MC/D LINE L1 -708 5470 5354 2570 179 12 6 chr6 160069000 160069509 -22345733 - MER41E LTR ERV1 0 512 1 788 256 0 8 chr6 160069578 160069842 -22345400 - L1P LINE L1 -785 5369 5109 329 246 6 0 chr6 160069951 160070122 -22345120 + (CA)n Simple_repeat Simple_repeat 1 172 0 977 133 0 0 chr6 160070695 160070823 -22344419 - AluSg SINE Alu -149 161 34 3602 216 24 3 chr6 160070823 160071744 -22343498 - L1P LINE L1 -754 5392 4453 28 29 0 0 chr6 160071923 160071958 -22343284 + AT_rich Low_complexity Low_complexity 1 35 0 1608 119 152 19 chr6 160074852 160075121 -22340121 - AluSx SINE Alu -7 305 1 2077 127 7 0 chr6 160075121 160075412 -22339830 - AluSg SINE Alu -14 296 3 180 77 0 0 chr6 160075939 160075965 -22339277 + (GGA)n Simple_repeat Simple_repeat 2 27 0 584 344 61 30 chr6 160076028 160077028 -22338214 + HERV16 LTR ERVL 787 1881 -3115 532 246 8 0 chr6 160077034 160077164 -22338078 - MER58B DNA MER1_type -16 325 195 256 313 26 17 chr6 160077917 160078032 -22337210 + MER58B DNA MER1_type 226 341 0 1987 147 3 3 chr6 160079549 160079862 -22335380 - AluSq SINE Alu 0 313 1 239 159 16 16 chr6 160079919 160079982 -22335260 + L1MB2 LINE L1 6104 6166 -5 212 297 0 0 chr6 160081552 160081616 -22333626 + MIR SINE MIR 81 144 -64 1323 168 85 39 chr6 160083187 160083664 -22331578 + MER51A LTR ERV1 1 575 -59 480 269 8 0 chr6 160084599 160084729 -22330513 + MER58B DNA MER1_type 195 325 -16 495 322 38 21 chr6 160084736 160084972 -22330270 - HERV16 LTR ERVL -3116 1880 1641 379 319 80 43 chr6 160085140 160085629 -22329613 - HERV16 LTR ERVL -3604 1392 886 2505 90 3 0 chr6 160085853 160086163 -22329079 - AluSp SINE Alu -2 311 1 224 164 15 0 chr6 160087091 160087158 -22328084 + (TG)n Simple_repeat Simple_repeat 1 68 0 735 249 52 42 chr6 160087438 160087839 -22327403 - L1M4 LINE L1 -2927 3455 3051 865 143 15 0 chr6 160087840 160087973 -22327269 + FLAM_C SINE Alu 1 135 -8 562 271 74 19 chr6 160087979 160088408 -22326834 - L1M4 LINE L1 -3810 2572 2126 552 191 0 0 chr6 160088412 160088517 -22326725 - AluJo/FRAM SINE Alu -4 308 204 366 172 0 0 chr6 160088520 160088578 -22326664 - AluJo/FRAM SINE Alu -42 260 203 381 138 0 0 chr6 160088580 160088638 -22326604 - AluJo/FRAM SINE Alu -42 260 203 419 198 12 0 chr6 160088640 160088721 -22326521 - FRAM SINE Alu -52 124 43 1132 225 70 57 chr6 160088900 160089371 -22325871 + MLT1D LTR MaLR 28 504 -1 274 206 0 0 chr6 160089473 160089536 -22325706 + L1MB2 LINE L1 6105 6167 -4 431 167 0 0 chr6 160089561 160089639 -22325603 - FRAM SINE Alu -53 123 46 305 341 93 17 chr6 160090360 160090650 -22324592 - L1MC4a LINE L1 -1901 5907 5596 201 236 0 42 chr6 160091792 160091864 -22323378 + GA-rich Low_complexity Low_complexity 1 69 0 250 285 53 0 chr6 160091992 160092110 -22323132 - L1MC4a LINE L1 -693 5485 5354 2946 148 12 4 chr6 160092111 160092619 -22322623 - MER41E LTR ERV1 0 512 1 1329 277 17 12 chr6 160092660 160093143 -22322099 - L1MC4a LINE L1 -757 5389 4905 329 184 66 26 chr6 160093219 160093295 -22321947 + LTR16B LTR ERVL 382 460 -4 1518 228 3 0 chr6 160093489 160093787 -22321455 - AluJo SINE Alu -13 299 1 211 342 63 0 chr6 160094535 160094646 -22320596 - L2 LINE L2 -17 3296 3179 380 238 6 0 chr6 160095078 160095246 -22319996 + (CA)n Simple_repeat Simple_repeat 2 170 0 1090 228 8 8 chr6 160095753 160096007 -22319235 + MER119 DNA MER1_type 127 380 -203 311 248 75 8 chr6 160097844 160097977 -22317265 + MER119 DNA MER1_type 369 510 -73 2115 146 0 3 chr6 160097989 160098298 -22316944 - AluSc SINE Alu -1 308 1 1822 210 36 0 chr6 160099437 160099827 -22315415 - L1PA16 LINE L1 -2 6164 5761 914 242 74 27 chr6 160099930 160100201 -22315041 + MLT2D LTR ERVL 93 381 -33 468 0 0 0 chr6 160100201 160100253 -22314989 + (CA)n Simple_repeat Simple_repeat 2 53 0 914 242 74 27 chr6 160100253 160100279 -22314963 + MLT2D LTR ERVL 381 404 -10 275 179 15 0 chr6 160100553 160100620 -22314622 + (CA)n Simple_repeat Simple_repeat 2 69 0 207 0 0 0 chr6 160100975 160100998 -22314244 + (CAA)n Simple_repeat Simple_repeat 2 24 0 381 258 71 11 chr6 160101103 160101285 -22313957 - L1MC4 LINE L1 -177 7865 7673 273 321 107 26 chr6 160101673 160102019 -22313223 - L1ME LINE L1 -538 5632 5259 219 36 0 0 chr6 160102177 160102205 -22313037 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2385 69 0 14 chr6 160102207 160102496 -22312746 - AluY SINE Alu -26 285 1 2098 107 11 0 chr6 160102500 160102812 -22312430 - AluSp SINE Alu 0 315 1 2390 67 0 19 chr6 160103055 160103368 -22311874 + AluY SINE Alu 1 307 -4 1020 147 0 0 chr6 160103876 160104032 -22311210 + AluSg/x SINE Alu 155 310 0 370 299 125 44 chr6 160104035 160104591 -22310651 + L1ME3A LINE L1 5303 5888 -282 243 196 0 0 chr6 160104654 160104705 -22310537 + Alu SINE Alu 248 298 -4 198 0 0 0 chr6 160105494 160105516 -22309726 + (TTA)n Simple_repeat Simple_repeat 1 22 0 284 294 30 55 chr6 160105556 160105757 -22309485 - MLT1K LTR MaLR -1 587 392 240 241 37 0 chr6 160108905 160108959 -22306283 + MLT2D LTR ERVL 231 286 -128 235 175 0 111 chr6 160109110 160109173 -22306069 + MLT2D LTR ERVL 231 286 -128 277 268 39 8 chr6 160109812 160109939 -22305303 + L2 LINE L2 2857 2987 -285 281 233 75 90 chr6 160109991 160110124 -22305118 + L2 LINE L2 2905 3035 -237 287 113 113 0 chr6 160110256 160110309 -22304933 + MADE1 DNA Mariner 1 59 -21 338 111 0 0 chr6 160110330 160110384 -22304858 + MADE1 DNA Mariner 27 80 0 189 280 220 30 chr6 160110388 160110520 -22304722 + L2 LINE L2 3155 3311 -2 976 219 3 58 chr6 160110701 160111011 -22304231 - L1 LINE L1 -1441 4705 4413 987 221 28 104 chr6 160111636 160112070 -22303172 - MLT2B3 LTR ERVL -4 550 150 1285 207 48 6 chr6 160112163 160112636 -22302606 - L1M4 LINE L1 -648 5530 5040 216 200 0 0 chr6 160112636 160112686 -22302556 + T-rich Low_complexity Low_complexity 4 53 0 * 291 161 0 0 chr6 160112676 160112732 -22302510 + CT-rich Low_complexity Low_complexity 1 56 0 207 132 0 53 chr6 160112741 160112779 -22302463 + (TTCCC)n Simple_repeat Simple_repeat 5 40 0 1941 145 0 7 chr6 160112779 160113062 -22302180 - AluSq SINE Alu -32 281 1 437 193 175 0 chr6 160113064 160113178 -22302064 - MLT1A1 LTR MaLR -231 134 1 1607 264 171 16 chr6 160113281 160114040 -22301202 - L1M4 LINE L1 -5380 1162 286 234 0 0 0 chr6 160114509 160114535 -22300707 + (A)n Simple_repeat Simple_repeat 1 26 0 4399 181 13 0 chr6 160114791 160115879 -22299363 - L1PA16 LINE L1 -9 6157 5022 994 206 15 5 chr6 160115882 160116081 -22299161 + AluJo SINE Alu 89 289 -23 2938 22 0 0 chr6 160116343 160116661 -22298581 + AluYb8 SINE Alu 1 318 0 195 377 130 5 chr6 160118344 160118713 -22296529 - L2 LINE L2 -31 3241 2827 225 197 0 0 chr6 160118764 160118840 -22296402 + (CA)n Simple_repeat Simple_repeat 2 77 0 616 326 56 8 chr6 160120666 160121084 -22294158 + HERV16 LTR ERVL 1669 2113 -3062 349 282 18 0 chr6 160121131 160121241 -22294001 - MER58B DNA MER1_type -35 306 195 225 178 0 0 chr6 160122753 160122798 -22292444 + (CCCCG)n Simple_repeat Simple_repeat 5 49 0 188 275 231 0 chr6 160122943 160123034 -22292208 - MIR SINE MIR -70 192 81 2169 118 6 13 chr6 160124882 160125195 -22290047 - AluSx SINE Alu -1 311 1 2134 120 3 3 chr6 160125390 160125699 -22289543 - AluSg SINE Alu -1 309 1 386 307 111 49 chr6 160126359 160126520 -22288722 - L1MEd LINE L1 -3890 2239 2089 229 0 83 0 chr6 160126520 160126556 -22288686 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1904 93 0 79 chr6 160126559 160126849 -22288393 - AluY SINE Alu -44 267 1 1922 129 7 14 chr6 160126855 160127149 -22288093 - AluJo SINE Alu -18 294 3 386 307 111 49 chr6 160127149 160127383 -22287859 - L1MEd LINE L1 -4045 2084 1832 2040 211 25 21 chr6 160128038 160128558 -22286684 + MLT1E2 LTR MaLR 97 618 -8 407 271 19 0 chr6 160128560 160128705 -22286537 - HAL1b LINE L1 -807 1625 392 22 0 0 0 chr6 160128931 160128953 -22286289 + AT_rich Low_complexity Low_complexity 1 22 0 1267 290 59 33 chr6 160129979 160130858 -22284384 + L1MEd LINE L1 457 1235 -4834 380 289 40 95 chr6 160130925 160131352 -22283890 - L1MEd LINE L1 -4924 1195 800 1863 144 3 31 chr6 160131352 160131665 -22283577 - AluSx SINE Alu 0 305 1 779 176 15 136 chr6 160131679 160131823 -22283419 + MER33 DNA MER1_type 1 154 -2470 2548 48 3 0 chr6 160131823 160132117 -22283125 + AluY SINE Alu 1 295 -16 779 176 15 136 chr6 160132117 160132358 -22282884 + MER33 DNA MER1_type 154 355 -8 1879 179 0 3 chr6 160132518 160132815 -22282427 + AluJb SINE Alu 1 296 -16 568 274 68 65 chr6 160133718 160133966 -22281276 + MIR SINE MIR 1 249 -13 283 287 139 9 chr6 160133990 160134098 -22281144 + MIR3 SINE MIR 41 162 -46 2346 58 34 3 chr6 160134655 160134948 -22280294 - AluY SINE Alu -9 302 1 21 0 0 0 chr6 160135176 160135197 -22280045 + AT_rich Low_complexity Low_complexity 1 21 0 1380 140 59 92 chr6 160135322 160135593 -22279649 - AluSx SINE Alu -10 302 41 2345 65 0 36 chr6 160136025 160136332 -22278910 + AluY SINE Alu 1 296 -15 250 304 11 33 chr6 160137307 160137399 -22277843 + MIR SINE MIR 36 125 -83 234 354 0 0 chr6 160137577 160137642 -22277600 + L2 LINE L2 3247 3311 -2 212 271 17 34 chr6 160138251 160138310 -22276932 - MIR SINE MIR -182 80 23 1719 169 3 17 chr6 160138838 160139134 -22276108 + AluJb SINE Alu 1 292 -20 2563 51 0 22 chr6 160139136 160139452 -22275790 + AluY SINE Alu 1 309 -2 257 250 56 56 chr6 160139904 160140012 -22275230 + MIR3 SINE MIR 51 158 -50 341 293 48 14 chr6 160141219 160141359 -22273883 - MIR SINE MIR -65 143 18 1931 101 0 132 chr6 160141468 160141603 -22273639 + AluSx SINE Alu 1 64 -238 2408 82 3 0 chr6 160141603 160141894 -22273348 + AluY SINE Alu 1 292 -19 1931 101 0 132 chr6 160141894 160142106 -22273136 + AluSx SINE Alu 64 302 0 201 74 0 0 chr6 160142357 160142384 -22272858 + (AGGGGG)n Simple_repeat Simple_repeat 4 30 0 1358 179 60 58 chr6 160143100 160143464 -22271778 - MLT1A1 LTR MaLR 0 365 1 579 282 157 9 chr6 160143484 160143700 -22271542 + MIR SINE MIR 12 259 -3 2177 55 74 4 chr6 160144495 160144795 -22270447 + AluY SINE Alu 1 311 0 208 394 71 13 chr6 160144808 160144963 -22270279 - MIR SINE MIR -65 197 34 775 142 0 54 chr6 160145410 160145558 -22269684 - FRAM SINE Alu 0 176 37 2505 72 0 13 chr6 160145568 160145872 -22269370 - AluY SINE Alu -11 300 1 1059 131 131 25 chr6 160145872 160146070 -22269172 + Tigger7 DNA MER2_type 2369 2587 0 732 169 28 21 chr6 160146094 160146236 -22269006 - AluJo SINE Alu -168 144 2 183 42 0 0 chr6 160146244 160146268 -22268974 + (TTG)n Simple_repeat Simple_repeat 2 25 0 421 304 6 6 chr6 160146270 160146428 -22268814 - MER110A LTR ERV1 -2 466 309 2492 83 0 0 chr6 160146459 160146760 -22268482 + AluSg SINE Alu 1 301 -9 315 289 58 19 chr6 160147194 160147298 -22267944 - MIR SINE MIR -150 112 5 278 290 130 30 chr6 160147739 160147839 -22267403 - L3b LINE CR1 -34 1549 1440 1167 93 37 0 chr6 160147852 160148014 -22267228 + AluY SINE Alu 136 303 -8 183 278 41 62 chr6 160148046 160148143 -22267099 - L3b LINE CR1 -193 1390 1296 288 346 65 51 chr6 160149064 160149417 -22265825 - L2 LINE L2 -1 3271 2914 2159 129 0 13 chr6 160150206 160150509 -22264733 + AluSx SINE Alu 1 299 -13 278 276 48 29 chr6 160150906 160151011 -22264231 + L2 LINE L2 3160 3266 -47 1489 227 74 0 chr6 160151382 160151761 -22263481 - MER90 LTR ERV1 -2 573 167 2571 117 3 13 chr6 160151762 160152146 -22263096 + MER48 LTR ERV1 1 380 -7 14305 96 19 6 chr6 160152146 160154204 -22261038 + HERVH48 LTR ERV1 4571 6654 0 2601 122 31 15 chr6 160154204 160154596 -22260646 + MER48 LTR ERV1 1 398 0 520 153 100 58 chr6 160154596 160154756 -22260486 - MER90 LTR ERV1 -404 210 1 581 283 23 23 chr6 160155242 160155419 -22259823 + MIR SINE MIR 12 188 -74 425 383 0 12 chr6 160155611 160155773 -22259469 + MIR SINE MIR 33 192 -70 2305 147 40 17 chr6 160156037 160156514 -22258728 + L1MA8 LINE L1 4183 4670 -1476 * 4935 160 46 18 chr6 160156508 160157237 -22258005 + L1MA8 LINE L1 5016 5793 -498 1879 102 4 8 chr6 160157237 160157491 -22257751 + AluSp SINE Alu 53 305 -8 4935 160 46 18 chr6 160157491 160157997 -22257245 + L1MA8 LINE L1 5793 6284 -7 989 242 66 40 chr6 160158025 160158122 -22257120 - L1ME3 LINE L1 -116 6046 5953 2326 106 3 0 chr6 160158122 160158466 -22256776 - AluSp SINE Alu 0 313 1 989 242 66 40 chr6 160158466 160158715 -22256527 - L1ME3 LINE L1 -209 5953 5691 24 0 0 0 chr6 160158981 160159005 -22256237 + AT_rich Low_complexity Low_complexity 1 24 0 1559 69 0 30 chr6 160159059 160159262 -22255980 - AluY SINE Alu -9 302 106 1973 138 3 3 chr6 160159456 160159770 -22255472 + AluSx SINE Alu 1 314 0 2542 50 0 3 chr6 160159805 160160102 -22255140 + AluY SINE Alu 1 296 -15 383 275 207 53 chr6 160160395 160160810 -22254432 + L2 LINE L2 2190 2668 -646 2147 163 35 41 chr6 160161118 160161414 -22253828 - Tigger2a DNA MER2_type -2275 433 139 2252 62 0 4 chr6 160161414 160161687 -22253555 - AluY SINE Alu -1 310 39 2147 163 35 41 chr6 160161687 160161825 -22253417 - Tigger2a DNA MER2_type -2569 139 2 334 157 10 4 chr6 160162337 160162563 -22252679 + AluJo SINE Alu 1 302 0 858 146 0 7 chr6 160163327 160163462 -22251780 - AluJo SINE Alu -178 134 6 1787 161 28 109 chr6 160163524 160163879 -22251363 + MLT1B LTR MaLR 3 320 -70 2262 94 0 0 chr6 160163879 160164186 -22251056 + AluSc SINE Alu 1 307 -2 1787 161 28 109 chr6 160164186 160164252 -22250990 + MLT1B LTR MaLR 320 390 0 905 198 43 5 chr6 160164517 160164704 -22250538 - MIR SINE MIR -32 230 37 213 325 62 84 chr6 160164793 160165199 -22250043 + L2 LINE L2 2840 3236 -36 1405 224 68 11 chr6 160165826 160166179 -22249063 + MLT1F LTR MaLR 2 374 -168 605 214 0 8 chr6 160166200 160166317 -22248925 - FLAM_C SINE Alu -26 117 2 763 212 6 36 chr6 160166322 160166487 -22248755 + MLT1F LTR MaLR 378 537 -5 1336 182 99 52 chr6 160167631 160167830 -22247412 - MER44D DNA MER2_type -1882 609 421 2316 70 0 16 chr6 160167830 160168142 -22247100 + AluY SINE Alu 1 307 -4 1336 182 99 52 chr6 160168142 160168266 -22246976 - MER44D DNA MER2_type -2070 421 1 3512 120 269 0 chr6 160168688 160169339 -22245903 - LTR12 LTR ERV1 0 826 1 845 221 41 55 chr6 160169417 160169707 -22245535 - pTR5 LTR ERV1 -1410 1028 743 333 0 0 0 chr6 160170557 160170594 -22244648 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2046 60 45 0 chr6 160170596 160170865 -22244377 - AluY SINE Alu -30 281 1 1600 210 122 38 chr6 160171126 160171292 -22243950 + MER34 LTR ERV1 2 153 -389 2211 99 0 3 chr6 160171292 160171596 -22243646 + AluSq SINE Alu 1 303 -10 1600 210 122 38 chr6 160171596 160171928 -22243314 + MER34 LTR ERV1 153 542 0 396 246 85 8 chr6 160171987 160172117 -22243125 + Charlie8 DNA MER1_type 1 140 -2277 286 226 96 61 chr6 160172507 160172622 -22242620 + MER45A DNA AcHobo 60 178 0 2817 120 44 49 chr6 160173210 160173550 -22241692 - L1MA8 LINE L1 -5 6286 5949 1909 103 4 4 chr6 160173550 160173821 -22241421 - AluSx SINE Alu -41 271 1 2817 120 44 49 chr6 160173821 160174031 -22241211 - L1MA8 LINE L1 -342 5949 5739 4936 138 49 40 chr6 160174032 160174401 -22240841 - L1MA8 LINE L1 -617 5695 5331 1763 130 6 91 chr6 160174401 160174558 -22240684 - L1MA3 LINE L1 -6 6299 6130 1925 122 0 64 chr6 160174558 160174886 -22240356 - AluSx SINE Alu -5 307 1 1763 130 6 91 chr6 160174886 160174905 -22240337 - L1MA3 LINE L1 -175 6130 6111 2110 98 27 0 chr6 160174905 160175201 -22240041 - AluY SINE Alu -7 304 1 1763 130 6 91 chr6 160175201 160175385 -22239857 - L1MA3 LINE L1 -194 6111 5969 4936 138 49 40 chr6 160175385 160176205 -22239037 - L1MA8 LINE L1 -981 5331 4481 288 137 0 0 chr6 160176209 160176260 -22238982 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 445 177 9 5 chr6 160176260 160176275 -22238967 - L1M4 LINE L1 -1635 4511 4498 1566 188 0 28 chr6 160176275 160176563 -22238679 - AluJo SINE Alu -26 286 7 445 177 9 5 chr6 160176563 160176650 -22238592 - L1M4 LINE L1 -1648 4498 4407 2343 84 3 0 chr6 160176651 160176959 -22238283 - AluY SINE Alu -2 309 1 988 82 0 15 chr6 160176961 160177095 -22238147 - AluY SINE Alu -179 132 1 3123 147 34 132 chr6 160177096 160177318 -22237924 - L1M4 LINE L1 -1724 4422 4180 1617 167 0 4 chr6 160177318 160177593 -22237649 - AluSx SINE Alu -38 274 1 3123 147 34 132 chr6 160177593 160177786 -22237456 - L1M4 LINE L1 -1966 4180 3970 1798 148 60 35 chr6 160177786 160178152 -22237090 - THE1C LTR MaLR 0 375 1 3123 147 34 132 chr6 160178152 160178471 -22236771 - L1M4 LINE L1 -2176 3970 3769 2497 118 32 59 chr6 160178471 160178697 -22236545 + MSTA LTR MaLR 1 211 -217 2126 103 3 10 chr6 160178697 160178997 -22236245 - AluSq SINE Alu -15 298 1 2497 118 32 59 chr6 160178997 160179210 -22236032 + MSTA LTR MaLR 211 428 0 3123 147 34 132 chr6 160179210 160179298 -22235944 - L1M4 LINE L1 -2377 3769 3674 1777 234 36 5 chr6 160179340 160179789 -22235453 + MLT1C LTR MaLR 3 465 -2 498 241 64 48 chr6 160180518 160180705 -22234537 + L2 LINE L2 3118 3307 -6 725 228 22 71 chr6 160181459 160181683 -22233559 - MIR SINE MIR -21 241 29 683 227 100 135 chr6 160181872 160182331 -22232911 + MLT1J1 LTR MaLR 1 443 -3 1982 138 43 30 chr6 160182743 160182784 -22232458 - THE1C LTR MaLR 0 375 336 1954 112 42 3 chr6 160182784 160183071 -22232171 + AluSx SINE Alu 1 298 -14 1982 138 43 30 chr6 160183071 160183399 -22231843 - THE1C LTR MaLR -39 336 1 835 194 13 0 chr6 160183672 160183827 -22231415 - FRAM SINE Alu -17 159 3 685 224 36 18 chr6 160184116 160184281 -22230961 - MLT1C LTR MaLR -247 220 53 373 106 0 0 chr6 160184823 160184870 -22230372 - Alu SINE Alu -249 52 6 2379 147 66 2 chr6 160184953 160185347 -22229895 + MSTB LTR MaLR 8 426 0 22 0 0 0 chr6 160185358 160185380 -22229862 + AT_rich Low_complexity Low_complexity 1 22 0 2292 68 0 7 chr6 160185502 160185798 -22229444 - AluY SINE Alu -1 310 17 2087 100 0 4 chr6 160186110 160186434 -22228808 - AluSx SINE Alu 0 325 3 1921 104 0 57 chr6 160186446 160186791 -22228451 - AluSg SINE Alu 0 328 1 315 280 13 0 chr6 160186793 160186868 -22228374 - MER5B DNA MER1_type -36 142 67 297 281 81 62 chr6 160187307 160187467 -22227775 + MIR SINE MIR 85 247 -15 412 298 8 8 chr6 160188120 160188244 -22226998 + MER5C DNA MER1_type 1 124 -200 1090 195 168 19 chr6 160188623 160188885 -22226357 - AluJb SINE Alu 0 302 2 246 385 98 0 chr6 160189129 160189251 -22225991 - L2 LINE L2 -2 3270 3137 461 267 235 0 chr6 160189278 160189499 -22225743 - L2 LINE L2 -32 3281 3009 1471 175 97 52 chr6 160189643 160189992 -22225250 - MLT1A1 LTR MaLR 0 365 1 211 246 14 43 chr6 160190016 160190085 -22225157 - L2 LINE L2 -973 2341 2275 573 308 48 5 chr6 160190296 160190504 -22224738 - MIR SINE MIR -37 225 9 1455 159 21 71 chr6 160190760 160191086 -22224156 + AluJo SINE Alu 2 311 -1 447 243 140 47 chr6 160191218 160191337 -22223905 - MER112 DNA MER1_type -26 234 128 2122 129 49 22 chr6 160191337 160191702 -22223540 + THE1C LTR MaLR 1 375 0 447 243 140 47 chr6 160191702 160191796 -22223446 - MER112 DNA MER1_type -132 128 1 557 314 34 47 chr6 160191971 160192379 -22222863 - L2 LINE L2 -1031 2283 1881 2014 93 7 0 chr6 160195165 160195465 -22219777 + AluSg SINE Alu 1 302 0 21 36 0 0 chr6 160196648 160196676 -22218566 + GC_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 160196741 160196769 -22218473 + GC_rich Low_complexity Low_complexity 1 28 0 613 304 45 36 chr6 160199604 160199824 -22215418 - MIR SINE MIR -13 249 28 769 271 50 29 chr6 160199855 160200132 -22215110 - MER115 DNA AcHobo -32 661 379 474 281 113 35 chr6 160200159 160200362 -22214880 - MER115 DNA AcHobo -370 323 105 2102 106 0 0 chr6 160200685 160200998 -22214244 - AluSg SINE Alu 0 313 1 402 257 134 35 chr6 160201710 160201881 -22213361 - MIR SINE MIR -37 225 38 1496 158 86 4 chr6 160202318 160202597 -22212645 + AluJb SINE Alu 1 302 -10 287 328 25 17 chr6 160202696 160202815 -22212427 + MIR SINE MIR 13 132 -130 294 29 0 0 chr6 160202820 160202855 -22212387 + (TG)n Simple_repeat Simple_repeat 2 36 0 1061 193 116 19 chr6 160202858 160203117 -22212125 - AluJb SINE Alu -17 285 2 526 312 53 93 chr6 160204309 160205030 -22210212 + L2 LINE L2 1934 2625 -689 306 265 15 103 chr6 160205153 160205289 -22209953 - MIR SINE MIR -56 206 83 2714 13 0 0 chr6 160205359 160205668 -22209574 + AluYa5 SINE Alu 1 309 -2 244 254 236 55 chr6 160205703 160205813 -22209429 - MIR SINE MIR -70 192 63 1210 196 56 47 chr6 160206345 160206687 -22208555 + MLT1A2 LTR MaLR 1 345 -29 192 152 0 0 chr6 160207382 160207415 -22207827 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 189 313 135 10 chr6 160207542 160207638 -22207604 + L2 LINE L2 3194 3301 -12 216 240 137 96 chr6 160207910 160208056 -22207186 + MIR3 SINE MIR 53 204 -4 309 263 70 26 chr6 160208913 160209027 -22206215 - MIR SINE MIR -70 192 74 2306 107 0 0 chr6 160209263 160209573 -22205669 + AluSx SINE Alu 1 310 -2 1546 184 71 91 chr6 160211024 160211476 -22203766 - MSTB2 LTR MaLR 0 457 15 27 0 0 0 chr6 160212367 160212394 -22202848 + AT_rich Low_complexity Low_complexity 1 27 0 306 186 14 29 chr6 160212697 160212767 -22202475 + L1ME2 LINE L1 6087 6155 -9 287 316 123 11 chr6 160212807 160212994 -22202248 + L2 LINE L2 1750 1957 -1357 208 268 12 37 chr6 160213042 160213124 -22202118 + (TCCG)n Simple_repeat Simple_repeat 3 82 0 4547 168 28 21 chr6 160213148 160213774 -22201468 - L1MC3 LINE L1 0 7785 7165 2456 54 0 28 chr6 160213774 160214091 -22201151 - AluY SINE Alu -1 310 3 4547 168 28 21 chr6 160214091 160214518 -22200724 - L1MC3 LINE L1 -620 7165 6743 2282 90 6 6 chr6 160214518 160214830 -22200412 + AluSx SINE Alu 1 312 0 4547 168 28 21 chr6 160214830 160215565 -22199677 - L1MC3 LINE L1 -1042 6743 5990 2209 103 3 0 chr6 160215565 160215875 -22199367 - AluSx SINE Alu -1 311 1 4547 168 28 21 chr6 160215875 160216228 -22199014 - L1MC3 LINE L1 -1795 5990 5641 434 243 183 63 chr6 160216229 160216563 -22198679 - L2 LINE L2 -43 3270 2897 2433 59 0 0 chr6 160216630 160216935 -22198307 + AluY SINE Alu 1 305 -6 535 228 84 30 chr6 160216935 160217102 -22198140 - L1ME3A LINE L1 -7 6163 5988 2065 242 38 44 chr6 160217142 160218104 -22197138 - L1ME3A LINE L1 -272 5898 4942 700 108 10 0 chr6 160218104 160218206 -22197036 + U13 snRNA snRNA 1 103 -1 2065 242 38 44 chr6 160218206 160218272 -22196970 - L1ME3A LINE L1 -1228 4942 4877 1905 168 26 17 chr6 160218300 160218652 -22196590 + MLT1A1 LTR MaLR 11 365 0 181 229 96 72 chr6 160218707 160218790 -22196452 + L2 LINE L2 3212 3296 -17 242 196 0 0 chr6 160219034 160219080 -22196162 - L2 LINE L2 -3 3310 3265 2354 65 0 19 chr6 160219590 160219900 -22195342 - AluY SINE Alu -7 304 1 992 118 0 0 chr6 160220469 160220605 -22194637 + AluSq/x SINE Alu 1 136 -177 2227 86 3 7 chr6 160220605 160220908 -22194334 + AluSx SINE Alu 1 302 -10 238 146 18 18 chr6 160221465 160221520 -22193722 + CT-rich Low_complexity Low_complexity 1 55 0 191 100 0 50 chr6 160221549 160221589 -22193653 + (TCCCC)n Simple_repeat Simple_repeat 2 39 0 230 238 16 16 chr6 160221590 160221653 -22193589 + CT-rich Low_complexity Low_complexity 6 68 0 180 0 0 0 chr6 160221671 160221691 -22193551 + (T)n Simple_repeat Simple_repeat 1 20 0 914 211 125 45 chr6 160221713 160221775 -22193467 + MER63B DNA MER1_type 1 57 -1005 2236 39 11 4 chr6 160221775 160222086 -22193156 + AluY SINE Alu 1 313 0 914 211 125 45 chr6 160222086 160222335 -22192907 + MER63B DNA MER1_type 57 338 -98 1889 123 3 3 chr6 160222412 160222697 -22192545 - AluSx SINE Alu -27 285 1 267 304 45 0 chr6 160223097 160223209 -22192033 - L2 LINE L2 -276 3037 2921 499 303 28 0 chr6 160223240 160223385 -22191857 - MLT1G1 LTR MaLR -4 591 443 1049 287 72 18 chr6 160223425 160223759 -22191483 - MLT1G1 LTR MaLR -243 352 1 288 288 7 115 chr6 160223796 160223838 -22191404 - L2 LINE L2 -8 3305 3260 2347 66 3 3 chr6 160223838 160224142 -22191100 - AluY SINE Alu -7 304 1 288 288 7 115 chr6 160224142 160224238 -22191004 - L2 LINE L2 -53 3260 3182 455 200 56 72 chr6 160224365 160224447 -22190795 + MER63 DNA MER1_type 884 966 -94 1604 135 55 45 chr6 160224447 160224758 -22190484 - L1MC1 LINE L1 -1 6332 6019 455 200 56 72 chr6 160224758 160224855 -22190387 + MER63 DNA MER1_type 966 1060 0 249 310 43 43 chr6 160224934 160225050 -22190192 - L3 LINE CR1 -3 1574 1459 2085 100 10 10 chr6 160225319 160225628 -22189614 - AluSx SINE Alu -3 309 1 891 204 82 4 chr6 160226550 160226781 -22188461 - L1MD3 LINE L1 -13 7982 7734 180 234 31 16 chr6 160227256 160227320 -22187922 - MIR SINE MIR -135 127 63 788 161 43 6 chr6 160227550 160227711 -22187531 - L1MA9 LINE L1 -7 6305 6139 2082 70 11 0 chr6 160227764 160228036 -22187206 - AluY SINE Alu -36 275 1 241 310 116 0 chr6 160228036 160228165 -22187077 + L2 LINE L2 3166 3309 -4 2130 100 0 10 chr6 160228203 160228502 -22186740 + AluSg SINE Alu 1 296 -14 544 280 102 5 chr6 160228634 160228820 -22186422 - MIR SINE MIR 0 262 59 1341 203 71 0 chr6 160232645 160232926 -22182316 + AluJo SINE Alu 2 302 -10 203 143 0 24 chr6 160232926 160232968 -22182274 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 653 212 47 102 chr6 160233271 160233440 -22181802 + MIR SINE MIR 26 178 -84 1923 154 0 0 chr6 160233440 160233746 -22181496 + AluSx SINE Alu 1 306 -6 653 212 47 102 chr6 160233746 160233827 -22181415 + MIR SINE MIR 178 262 0 407 245 78 0 chr6 160233875 160233977 -22181265 + MIR SINE MIR 77 186 -76 996 123 14 0 chr6 160234721 160234867 -22180375 - AluSc SINE Alu -35 274 127 892 229 25 33 chr6 160235694 160235798 -22179444 + MIR SINE MIR 9 112 -150 1595 185 116 6 chr6 160235798 160236127 -22179115 - MLT1A1 LTR MaLR 0 365 1 892 229 25 33 chr6 160236127 160236262 -22178980 + MIR SINE MIR 112 246 -16 2044 167 15 0 chr6 160236264 160236594 -22178648 - MER7A DNA MER2_type 0 346 14 2068 100 17 3 chr6 160237035 160237326 -22177916 - AluSg SINE Alu -15 295 1 1006 176 6 0 chr6 160237889 160238054 -22177188 + Tigger3(Golem) DNA MER2_type 2847 3012 -17 343 303 30 23 chr6 160238218 160238350 -22176892 + L2 LINE L2 3136 3268 -4 536 268 14 7 chr6 160238692 160238830 -22176412 + MIR SINE MIR 100 238 -24 196 318 0 0 chr6 160238988 160239032 -22176210 + L2 LINE L2 3192 3235 -37 845 279 62 36 chr6 160239206 160239564 -22175678 - MLT1I LTR MaLR 0 409 43 183 247 110 65 chr6 160240329 160240483 -22174759 - L2 LINE L2 -454 2860 2700 1852 98 0 16 chr6 160240501 160240757 -22174485 - AluSq SINE Alu -18 295 44 405 0 0 0 chr6 160240768 160240813 -22174429 + (TG)n Simple_repeat Simple_repeat 2 46 0 3178 109 20 4 chr6 160240821 160241317 -22173925 - L1PA13 LINE L1 -7 6156 5653 2392 79 0 0 chr6 160242003 160242306 -22172936 - AluY SINE Alu -8 303 1 23 0 0 0 chr6 160242343 160242366 -22172876 + AT_rich Low_complexity Low_complexity 1 23 0 2104 125 0 6 chr6 160242366 160242679 -22172563 - AluSx SINE Alu -1 311 1 1904 245 168 32 chr6 160243600 160243955 -22171287 + L2 LINE L2 2125 2430 -883 2013 114 7 0 chr6 160243955 160244244 -22170998 - AluSc SINE Alu -17 292 2 1904 245 168 32 chr6 160244244 160244942 -22170300 + L2 LINE L2 2430 3313 0 2040 152 7 10 chr6 160245774 160246084 -22169158 - MER1B DNA MER1_type 0 339 31 492 252 90 79 chr6 160246130 160246396 -22168846 - MLT1F1 LTR MaLR -5 561 276 190 279 209 12 chr6 160246676 160246762 -22168480 + MER5B DNA MER1_type 1 103 -75 189 171 0 0 chr6 160246768 160246803 -22168439 + GA-rich Low_complexity Low_complexity 1 35 0 213 246 16 16 chr6 160247228 160247289 -22167953 - L3 LINE CR1 -149 1428 1368 2197 97 50 39 chr6 160247398 160247758 -22167484 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr6 160248112 160248143 -22167099 + AT_rich Low_complexity Low_complexity 1 31 0 287 370 55 8 chr6 160248726 160248853 -22166389 - L2 LINE L2 -1 3271 3139 1705 145 39 0 chr6 160248878 160249160 -22166082 - AluSq SINE Alu -20 293 1 955 120 0 18 chr6 160249170 160249337 -22165905 - L1MB3 LINE L1 -1 6182 6019 219 296 0 0 chr6 160249840 160249894 -22165348 - L2 LINE L2 -2 3311 3258 220 291 0 0 chr6 160252375 160252430 -22162812 + L2 LINE L2 3187 3241 -31 219 330 11 11 chr6 160252645 160252733 -22162509 + MER5A DNA MER1_type 80 167 -22 1034 224 42 91 chr6 160252791 160253109 -22162133 + MLT1A1 LTR MaLR 2 299 -66 1689 180 7 0 chr6 160253109 160253404 -22161838 + AluJo SINE Alu 1 297 -15 1034 224 42 91 chr6 160253404 160253468 -22161774 + MLT1A1 LTR MaLR 299 365 0 370 94 31 0 chr6 160253704 160253768 -22161474 + (CA)n Simple_repeat Simple_repeat 2 67 0 231 239 22 0 chr6 160254647 160254693 -22160549 + MIR SINE MIR 130 176 -86 188 278 93 0 chr6 160254699 160254753 -22160489 - L2 LINE L2 -5 3308 3250 783 290 93 25 chr6 160254930 160255413 -22159829 - L2 LINE L2 -341 2973 2458 1939 183 28 79 chr6 160256372 160256918 -22158324 - L1MC2 LINE L1 -8 6336 5819 396 297 36 14 chr6 160258154 160258292 -22156950 - MIR3 SINE MIR -45 163 23 1848 108 4 21 chr6 160259069 160259348 -22155894 + AluSx SINE Alu 39 312 0 676 280 163 23 chr6 160259364 160259941 -22155301 + L2 LINE L2 2570 3294 -19 1978 145 0 0 chr6 160260373 160260683 -22154559 - AluSg SINE Alu 0 310 1 304 283 142 33 chr6 160261107 160261227 -22154015 - HAL1 LINE L1 -775 1732 1600 526 151 33 11 chr6 160261231 160261345 -22153897 - MSTD LTR MaLR 0 428 338 752 236 34 104 chr6 160261409 160261736 -22153506 - MSTD LTR MaLR -92 304 1 597 285 48 5 chr6 160261740 160261947 -22153295 - HAL1 LINE L1 -911 1596 1381 25 31 0 0 chr6 160261996 160262028 -22153214 + AT_rich Low_complexity Low_complexity 1 32 0 440 208 17 17 chr6 160262953 160263131 -22152111 + (TG)n Simple_repeat Simple_repeat 1 178 0 455 217 11 11 chr6 160263200 160263380 -22151862 + (TG)n Simple_repeat Simple_repeat 1 180 0 508 194 14 0 chr6 160263416 160263555 -22151687 + (TG)n Simple_repeat Simple_repeat 2 142 0 684 289 53 60 chr6 160264122 160264440 -22150802 + MER102a DNA MER1_type 12 327 -3 885 192 78 0 chr6 160265671 160265864 -22149378 + MER3 DNA MER1_type 2 209 0 1671 167 36 7 chr6 160266178 160266459 -22148783 + MER7A DNA MER2_type 1 287 -59 315 0 0 0 chr6 160266867 160266902 -22148340 + (CA)n Simple_repeat Simple_repeat 2 36 0 488 307 23 17 chr6 160267963 160268139 -22147103 + CT-rich Low_complexity Low_complexity 1 177 0 2121 124 3 0 chr6 160269734 160270039 -22145203 + AluSx SINE Alu 1 306 0 22 0 0 0 chr6 160270080 160270102 -22145140 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr6 160270240 160270282 -22144960 + AT_rich Low_complexity Low_complexity 1 42 0 2541 63 3 0 chr6 160270716 160271015 -22144227 - AluSx SINE Alu -12 300 1 460 184 220 0 chr6 160271533 160271642 -22143600 + AluJb SINE Alu 3 135 -177 2575 59 0 0 chr6 160271642 160271946 -22143296 + AluY SINE Alu 1 304 -7 21 36 0 0 chr6 160271947 160271975 -22143267 + AT_rich Low_complexity Low_complexity 1 28 0 353 246 150 68 chr6 160272113 160272165 -22143077 - HAL1 LINE L1 -114 2393 2347 1920 163 3 13 chr6 160272165 160272472 -22142770 - AluJo SINE Alu -8 304 1 353 246 150 68 chr6 160272472 160272742 -22142500 - HAL1 LINE L1 -160 2347 2101 1976 122 48 0 chr6 160272742 160273036 -22142206 - AluSx SINE Alu 0 307 1 353 246 150 68 chr6 160273036 160273212 -22142030 - HAL1 LINE L1 -406 2101 1852 1853 155 7 3 chr6 160273378 160273675 -22141567 - AluSx SINE Alu -14 298 1 217 251 96 39 chr6 160274774 160274889 -22140353 - MIR3 SINE MIR -104 104 1 394 202 86 35 chr6 160275123 160275292 -22139950 + MIR SINE MIR 4 186 -61 1866 171 0 7 chr6 160275314 160275619 -22139623 - AluJo SINE Alu -9 303 1 217 325 0 12 chr6 160275656 160275739 -22139503 - MIR SINE MIR -1 261 180 2555 141 14 20 chr6 160275794 160276235 -22139007 - L1MC1 LINE L1 -1 6612 6175 2207 116 10 0 chr6 160276286 160276589 -22138653 - AluSx SINE Alu -6 306 1 3938 182 13 13 chr6 160276616 160278024 -22137218 - L1MC1 LINE L1 -424 6189 4777 * 6161 153 32 51 chr6 160278021 160279188 -22136054 - L1MC1 LINE L1 -5271 1155 12 309 315 90 0 chr6 160279188 160279299 -22135943 - MIR SINE MIR -82 180 60 204 325 52 0 chr6 160280770 160280847 -22134395 - L2 LINE L2 0 3313 3233 1752 219 149 22 chr6 160281817 160282274 -22132968 - MER77 LTR ERV1 -10 595 81 957 240 97 48 chr6 160285261 160286179 -22129063 - L1ME3A LINE L1 -289 5881 4905 239 311 96 11 chr6 160286494 160286671 -22128571 - L2 LINE L2 -912 2402 2211 4540 191 13 10 chr6 160286796 160287659 -22127583 - MER6 DNA MER2_type 0 865 1 1876 233 66 66 chr6 160287704 160288088 -22127154 + L1ME2 LINE L1 5443 5826 -338 2405 107 3 0 chr6 160288088 160288397 -22126845 + AluSx SINE Alu 1 310 -2 1876 233 66 66 chr6 160288397 160288604 -22126638 + L1ME2 LINE L1 5826 6037 -127 1883 167 0 13 chr6 160288604 160288910 -22126332 - AluJo SINE Alu -10 302 1 1876 233 66 66 chr6 160288910 160289030 -22126212 + L1ME2 LINE L1 6036 6155 -9 249 293 13 0 chr6 160289193 160289268 -22125974 + CT-rich Low_complexity Low_complexity 4 79 0 218 286 14 14 chr6 160289646 160289716 -22125526 + MIR SINE MIR 51 120 -142 309 51 0 0 chr6 160290134 160290173 -22125069 + (TG)n Simple_repeat Simple_repeat 2 40 0 2188 123 3 0 chr6 160290723 160291023 -22124219 - AluSx SINE Alu -11 301 1 201 74 0 0 chr6 160291076 160291103 -22124139 + (ATG)n Simple_repeat Simple_repeat 3 29 0 514 262 94 53 chr6 160291107 160291351 -22123891 - MIR SINE MIR -7 255 2 245 140 18 35 chr6 160291874 160291931 -22123311 + GA-rich Low_complexity Low_complexity 2 57 0 215 266 29 101 chr6 160292156 160292295 -22122947 + L2 LINE L2 3136 3264 -8 2620 206 60 31 chr6 160292812 160293289 -22121953 + L1ME1 LINE L1 2697 3201 -2945 2329 100 0 13 chr6 160293289 160293600 -22121642 + AluSx SINE Alu 2 308 -4 2620 206 60 31 chr6 160293600 160293802 -22121440 + L1ME1 LINE L1 3201 3396 -2750 2027 132 44 40 chr6 160293812 160294352 -22120890 - MER51A LTR ERV1 0 634 1 376 256 0 23 chr6 160294356 160294442 -22120800 + MER21B LTR ERV1 1 84 -779 3208 213 81 40 chr6 160294469 160295125 -22120117 + MER21B LTR ERV1 19 717 -146 2338 104 0 3 chr6 160295125 160295422 -22119820 + AluSx SINE Alu 1 296 -16 3208 213 81 40 chr6 160295422 160295576 -22119666 + MER21B LTR ERV1 717 863 0 233 29 0 29 chr6 160295626 160295661 -22119581 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 3815 215 59 17 chr6 160295663 160296695 -22118547 + L1ME1 LINE L1 3508 4645 -1501 2320 102 0 7 chr6 160296695 160296998 -22118244 - AluSx SINE Alu -11 301 1 3815 215 59 17 chr6 160296998 160297161 -22118081 + L1ME1 LINE L1 4645 4800 -1346 1764 206 61 25 chr6 160297168 160297695 -22117547 + L1ME1 LINE L1 5616 6178 0 436 286 39 15 chr6 160297727 160297933 -22117309 + L2 LINE L2 1859 2069 -1245 1126 178 15 0 chr6 160298060 160298257 -22116985 + MER3 DNA MER1_type 10 209 0 609 313 58 35 chr6 160298540 160298971 -22116271 + L2 LINE L2 2381 2821 -493 23 33 0 0 chr6 160299480 160299510 -22115732 + AT_rich Low_complexity Low_complexity 1 30 0 712 306 51 4 chr6 160300164 160300439 -22114803 + L1ME4a LINE L1 5635 5922 -199 276 196 0 0 chr6 160300524 160300580 -22114662 + L1ME4a LINE L1 6065 6120 -1 21 0 0 0 chr6 160300605 160300626 -22114616 + AT_rich Low_complexity Low_complexity 1 21 0 569 237 121 14 chr6 160300983 160301198 -22114044 - MER112 DNA MER1_type 0 260 23 577 211 34 27 chr6 160301255 160301402 -22113840 + MER5A DNA MER1_type 1 148 -41 1217 200 41 40 chr6 160301403 160301777 -22113465 - MLT1A2 LTR MaLR 0 457 1 232 204 0 0 chr6 160301777 160301821 -22113421 + MER5A DNA MER1_type 145 188 -1 320 278 31 0 chr6 160301842 160301939 -22113303 + MER5A DNA MER1_type 15 114 -75 180 77 0 0 chr6 160302442 160302468 -22112774 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr6 160303741 160303762 -22111480 + AT_rich Low_complexity Low_complexity 1 21 0 364 266 50 43 chr6 160305071 160305210 -22110032 + MER5B DNA MER1_type 3 142 -36 564 245 160 5 chr6 160305470 160305658 -22109584 - MIR SINE MIR -38 224 8 2253 151 81 2 chr6 160306056 160306453 -22108789 + MSTB1 LTR MaLR 5 432 0 1535 226 112 14 chr6 160307603 160308024 -22107218 + LTR40b LTR ERVL 1 462 0 1680 147 12 4 chr6 160310795 160311072 -22104170 - AluJb SINE Alu 0 309 31 1809 149 19 10 chr6 160311594 160311902 -22103340 + AluJo SINE Alu 1 311 -1 209 32 0 32 chr6 160311906 160311937 -22103305 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 436 289 97 26 chr6 160311979 160312207 -22103035 - MIR SINE MIR -14 248 5 2313 117 48 20 chr6 160312309 160312661 -22102581 - THE1B LTR MaLR 0 364 3 216 324 97 38 chr6 160313169 160313202 -22102040 + MIR SINE MIR 17 47 -215 1961 169 0 0 chr6 160313202 160313497 -22101745 + AluSx SINE Alu 1 295 -17 216 324 97 38 chr6 160313497 160313648 -22101594 + MIR SINE MIR 47 212 -50 1602 164 22 11 chr6 160314933 160315201 -22100041 - AluJo SINE Alu -19 293 23 37 0 0 0 chr6 160315218 160315255 -22099987 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 160315439 160315460 -22099782 + AT_rich Low_complexity Low_complexity 1 21 0 554 265 88 6 chr6 160315870 160316040 -22099202 - MER58C DNA MER1_type -7 208 25 2145 110 0 0 chr6 160316342 160316633 -22098609 + AluSg SINE Alu 1 291 -19 21 0 0 0 chr6 160318693 160318714 -22096528 + AT_rich Low_complexity Low_complexity 1 21 0 2360 148 5 25 chr6 160318876 160318916 -22096326 - MLT2C1 LTR ERVL 0 397 358 432 0 0 0 chr6 160318916 160318964 -22096278 + (CA)n Simple_repeat Simple_repeat 2 49 0 2360 148 5 25 chr6 160318964 160319328 -22095914 - MLT2C1 LTR ERVL -39 358 1 2099 113 3 0 chr6 160319369 160319660 -22095582 + AluSx SINE Alu 2 293 -19 278 328 90 0 chr6 160319737 160319859 -22095383 + L2 LINE L2 3136 3268 -4 935 241 33 21 chr6 160319948 160320189 -22095053 + MIR SINE MIR 19 262 0 2000 170 97 23 chr6 160320418 160320853 -22094389 - MLT1C LTR MaLR 0 467 1 663 254 45 54 chr6 160322175 160322399 -22092843 - MIR SINE MIR -11 251 30 380 111 87 16 chr6 160322511 160322637 -22092605 + (ATATG)n Simple_repeat Simple_repeat 1 135 0 1460 181 33 117 chr6 160322754 160323206 -22092036 + MLT2D LTR ERVL 1 414 0 305 309 63 8 chr6 160323264 160323390 -22091852 + L2 LINE L2 3138 3270 -2 228 243 129 29 chr6 160323684 160323754 -22091488 + MIR SINE MIR 50 126 -136 2387 134 39 0 chr6 160324014 160324402 -22090840 - MER57A LTR ERV1 0 403 1 1832 145 3 29 chr6 160326790 160327100 -22088142 - AluJo SINE Alu -10 302 1 2409 67 0 0 chr6 160329322 160329622 -22085620 - AluY SINE Alu -11 300 1 262 307 71 24 chr6 160330020 160330147 -22085095 + MIR3 SINE MIR 42 174 -34 2184 103 0 10 chr6 160330845 160331147 -22084095 + AluSx SINE Alu 1 299 -13 1436 237 36 8 chr6 160331156 160331514 -22083728 + Cheshire DNA MER1_type 32 399 -2021 1433 104 5 9 chr6 160331659 160331870 -22083372 - AluSg/x SINE Alu -1 311 102 635 121 40 0 chr6 160332053 160332152 -22083090 + MER58 DNA MER1_type 2310 2412 -8 647 293 79 9 chr6 160332445 160332660 -22082582 - MIR SINE MIR 0 262 33 3025 158 49 18 chr6 160332978 160333548 -22081694 - L1MC3 LINE L1 0 7785 7198 487 301 27 67 chr6 160333724 160334023 -22081219 + L2 LINE L2 2981 3267 -5 1941 145 55 60 chr6 160334406 160334840 -22080402 + MSTB1 LTR MaLR 1 432 0 394 297 62 21 chr6 160334852 160334997 -22080245 - MIR SINE MIR -38 224 74 1349 195 43 3 chr6 160335037 160335319 -22079923 + AluJb SINE Alu 1 293 -19 326 174 14 14 chr6 160335581 160335650 -22079592 + HsTC2 DNA Tc2 6 74 -1824 838 171 7 0 chr6 160335932 160336072 -22079170 + FRAM SINE Alu 9 149 -27 321 82 0 0 chr6 160336072 160336121 -22079121 + (GA)n Simple_repeat Simple_repeat 1 49 0 3036 163 58 4 chr6 160336200 160336714 -22078528 + MLT1F LTR MaLR 1 542 0 2206 42 0 4 chr6 160337290 160337555 -22077687 - AluY SINE Alu -14 297 34 315 281 12 120 chr6 160337735 160337902 -22077340 + MER5B DNA MER1_type 1 149 -29 293 296 26 43 chr6 160338024 160338139 -22077103 - MIR3 SINE MIR 0 208 96 3102 206 85 27 chr6 160338732 160338802 -22076440 + MER21B LTR ERV1 12 77 -786 221 75 25 0 chr6 160338802 160338842 -22076400 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 3102 206 85 27 chr6 160338842 160339504 -22075738 + MER21B LTR ERV1 77 786 -77 287 324 18 27 chr6 160342173 160342284 -22072958 - MIR SINE MIR -132 130 21 1675 167 0 27 chr6 160342410 160342710 -22072532 - AluJo SINE Alu -20 292 1 4862 88 26 23 chr6 160343442 160344127 -22071115 - LTR12 LTR ERV1 -1 687 1 189 290 77 97 chr6 160344705 160344912 -22070330 - L2 LINE L2 -901 2413 2211 402 211 120 23 chr6 160344950 160345083 -22070159 + MER51B LTR ERV1 1 146 -231 1601 127 44 7 chr6 160345087 160345362 -22069880 + MER51B LTR ERV1 68 352 -25 1103 176 33 29 chr6 160345476 160345721 -22069521 + AluJo SINE Alu 1 246 -66 844 129 116 7 chr6 160345883 160346030 -22069212 + AluSg/x SINE Alu 135 297 -13 220 152 65 0 chr6 160346340 160346386 -22068856 - L2 LINE L2 0 3272 3224 2153 105 0 0 chr6 160347736 160348030 -22067212 - AluSc SINE Alu -15 294 1 534 271 129 0 chr6 160348456 160348611 -22066631 + MIR SINE MIR 72 246 -16 1565 123 0 0 chr6 160348638 160348857 -22066385 + AluSx SINE Alu 62 280 -32 324 0 0 0 chr6 160348858 160348894 -22066348 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2620 114 126 109 chr6 160348990 160349640 -22065602 - MER4A LTR ERV1 -3 661 1 365 285 69 42 chr6 160350668 160350812 -22064430 - MIR3 SINE MIR -36 172 25 219 69 0 0 chr6 160350885 160350914 -22064328 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 180 368 88 15 chr6 160351904 160352040 -22063202 - L2 LINE L2 -5 3267 3122 265 319 111 7 chr6 160352999 160353143 -22062099 + MIR SINE MIR 99 257 -5 2059 128 0 0 chr6 160353223 160353520 -22061722 + AluSx SINE Alu 1 297 -15 1021 142 6 18 chr6 160353892 160354061 -22061181 + L1PB2 LINE L1 5984 6150 -1 1221 261 97 24 chr6 160354778 160355433 -22059809 - L2 LINE L2 -52 3261 2550 190 284 0 98 chr6 160355456 160355558 -22059684 - L2 LINE L2 -879 2435 2344 1761 129 13 48 chr6 160355665 160355976 -22059266 + AluJo SINE Alu 1 300 -12 1182 62 0 0 chr6 160356111 160356255 -22058987 - U4 snRNA snRNA -1 144 1 2107 105 0 27 chr6 160356393 160356688 -22058554 + THE1B LTR MaLR 76 362 -2 3437 206 7 38 chr6 160357300 160358018 -22057224 - ERVL LTR ERVL -4513 1251 556 245 151 41 14 chr6 160359058 160359131 -22056111 + GA-rich Low_complexity Low_complexity 2 76 0 264 59 0 0 chr6 160360726 160360760 -22054482 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 199 256 207 41 chr6 160360787 160360908 -22054334 - L2 LINE L2 0 3313 3173 317 272 108 56 chr6 160360950 160361163 -22054079 - L2 LINE L2 -236 3077 2854 1681 149 3 3 chr6 160361337 160361661 -22053581 + AluJb SINE Alu 2 325 0 1923 128 10 7 chr6 160362666 160362956 -22052286 + AluSx SINE Alu 11 301 -11 779 191 5 8 chr6 160364069 160364343 -22050899 + AluJo SINE Alu 2 242 -70 748 170 85 148 chr6 160364343 160364408 -22050834 - LTR49-int LTR ERV1 -2527 4231 4163 1564 167 68 4 chr6 160364408 160364689 -22050553 - AluJo SINE Alu -9 303 5 748 170 85 148 chr6 160364689 160364941 -22050301 - LTR49-int LTR ERV1 -2595 4163 3934 1638 181 15 0 chr6 160364950 160365220 -22050022 - LTR49-int LTR ERV1 -3078 3680 3407 1400 179 0 36 chr6 160365212 160365464 -22049778 - LTR49-int LTR ERV1 -3745 446 204 * 2040 181 45 100 chr6 160365464 160365691 -22049551 - LTR49-int LTR ERV1 -2617 3714 3476 1695 80 18 0 chr6 160365691 160365917 -22049325 - AluSp SINE Alu -21 292 63 2040 181 45 100 chr6 160365917 160366672 -22048570 - LTR49-int LTR ERV1 -2855 3476 2566 666 247 146 13 chr6 160366721 160366960 -22048282 - MER34C LTR ERV1 -155 430 160 2198 212 46 161 chr6 160367011 160367824 -22047418 - LTR49-int LTR ERV1 -3352 2911 2000 1766 119 8 8 chr6 160367980 160368248 -22046994 + AluSc SINE Alu 21 288 -21 233 239 0 0 chr6 160369711 160369757 -22045485 + MLT1I LTR MaLR 91 136 -273 2206 112 0 0 chr6 160370636 160370932 -22044310 + AluSx SINE Alu 1 296 -16 593 248 56 19 chr6 160370945 160371106 -22044136 + MER45A DNA AcHobo 11 177 -1 10650 203 65 57 chr6 160372972 160375801 -22039441 - ERVL LTR ERVL -678 5086 2231 1903 101 59 25 chr6 160375801 160376087 -22039155 + AluSq SINE Alu 1 296 -17 10650 203 65 57 chr6 160376087 160376298 -22038944 - ERVL LTR ERVL -3533 2231 2023 1516 141 34 37 chr6 160376289 160376558 -22038684 - ERVL LTR ERVL -3885 1879 1612 * 1906 249 7 16 chr6 160377332 160377770 -22037472 - ERVL LTR ERVL -4135 1629 1196 1242 290 183 2 chr6 160377851 160378369 -22036873 - L2 LINE L2 -911 2403 1792 1589 159 7 42 chr6 160379078 160379386 -22035856 - AluJo SINE Alu -13 299 3 502 266 39 7 chr6 160379482 160379636 -22035606 - LTR45 LTR ERV1 0 525 367 185 209 23 0 chr6 160379641 160379684 -22035558 - MER5A DNA MER1_type -121 68 25 276 226 264 0 chr6 160379709 160379815 -22035427 - LTR45 LTR ERV1 -391 134 1 246 276 29 38 chr6 160379919 160380024 -22035218 - MIR3 SINE MIR -1 207 104 738 190 3 10 chr6 160380413 160380729 -22034513 + CT-rich Low_complexity Low_complexity 1 313 0 25 0 0 0 chr6 160381433 160381458 -22033784 + AT_rich Low_complexity Low_complexity 1 25 0 942 256 60 93 chr6 160381691 160382194 -22033048 + MLT1K LTR MaLR 81 566 -22 247 233 122 33 chr6 160382431 160382521 -22032721 - MIR SINE MIR -67 141 44 24 0 0 0 chr6 160382598 160382622 -22032620 + AT_rich Low_complexity Low_complexity 1 24 0 228 111 0 0 chr6 160383157 160383193 -22032049 + (GGA)n Simple_repeat Simple_repeat 2 37 0 2104 58 0 0 chr6 160384034 160384294 -22030948 - AluY SINE Alu -13 298 39 378 235 27 78 chr6 160384954 160385103 -22030139 - MER5A DNA MER1_type -45 133 2 513 246 189 18 chr6 160385624 160385852 -22029390 - Charlie8 DNA MER1_type -2141 276 10 803 221 98 5 chr6 160385954 160386158 -22029084 - MER58A DNA MER1_type 0 224 2 281 384 12 18 chr6 160387862 160388026 -22027216 + MIR3 SINE MIR 20 182 -26 1973 110 0 14 chr6 160388706 160388996 -22026246 + AluSx SINE Alu 1 286 -26 1799 160 7 16 chr6 160389836 160390030 -22025212 - AluJb SINE Alu 0 329 138 2130 70 49 3 chr6 160390030 160390314 -22024928 - AluY SINE Alu -14 297 1 1799 160 7 16 chr6 160390314 160390451 -22024791 - AluJb SINE Alu -191 138 1 278 314 111 29 chr6 160390544 160390716 -22024526 + MIR SINE MIR 67 252 -10 204 40 0 0 chr6 160390724 160390749 -22024493 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 210 128 0 0 chr6 160391751 160391790 -22023452 + (GA)n Simple_repeat Simple_repeat 2 40 0 2153 183 82 100 chr6 160391818 160392516 -22022726 - LTR8A LTR ERV1 -42 685 1 272 255 52 65 chr6 160393322 160393505 -22021737 - MLT1H LTR MaLR -260 289 76 24 0 0 0 chr6 160393596 160393620 -22021622 + AT_rich Low_complexity Low_complexity 1 24 0 443 275 74 48 chr6 160393911 160394044 -22021198 + LTR33 LTR ERVL 127 270 -251 1935 138 3 0 chr6 160394044 160394341 -22020901 - AluSx SINE Alu -14 298 1 443 275 74 48 chr6 160394341 160394436 -22020806 + LTR33 LTR ERVL 270 361 -160 686 216 33 7 chr6 160394447 160394600 -22020642 - MER45A DNA AcHobo -7 171 15 378 269 62 0 chr6 160394625 160394755 -22020487 + LTR33 LTR ERVL 384 521 0 724 116 0 27 chr6 160396263 160396375 -22018867 - MSTB LTR MaLR 0 432 324 1780 157 43 3 chr6 160396546 160396846 -22018396 - MSTB LTR MaLR -111 315 4 852 182 32 0 chr6 160396990 160397144 -22018098 + FRAM SINE Alu 1 40 0 2070 164 25 0 chr6 160397166 160397520 -22017722 + THE1B LTR MaLR 1 363 -1 769 195 7 0 chr6 160397659 160397808 -22017434 - L1 LINE L1 -1869 4277 4128 1919 137 22 25 chr6 160397814 160398172 -22017070 - Tigger2 DNA MER2_type -2361 357 1 1929 137 0 3 chr6 160399108 160399401 -22015841 + AluSx SINE Alu 18 309 -3 271 196 36 0 chr6 160399699 160399755 -22015487 - Alu SINE Alu -60 240 183 2038 131 0 7 chr6 160400367 160400672 -22014570 + AluSq SINE Alu 1 303 -10 1499 170 162 33 chr6 160400673 160401037 -22014205 - LTR47A LTR ERVL -41 411 1 527 289 46 66 chr6 160401501 160401698 -22013544 - MIR SINE MIR -46 216 24 2264 78 3 0 chr6 160402240 160402534 -22012708 - AluSp SINE Alu -18 295 1 1741 147 0 19 chr6 160403028 160403340 -22011902 - AluJb SINE Alu -1 311 6 1710 191 59 68 chr6 160403892 160404249 -22010993 - MLT1C LTR MaLR 0 467 113 1869 156 0 13 chr6 160404249 160404564 -22010678 - AluJb SINE Alu -1 311 1 1710 191 59 68 chr6 160404564 160404677 -22010565 - MLT1C LTR MaLR -354 113 1 1550 154 27 34 chr6 160404726 160405019 -22010223 - AluJo SINE Alu -21 291 1 2176 83 0 0 chr6 160405622 160405921 -22009321 - AluSc SINE Alu 0 299 1 2026 120 10 0 chr6 160406063 160406364 -22008878 - AluSx SINE Alu -4 308 5 311 258 18 74 chr6 160406433 160406596 -22008646 + MER112 DNA MER1_type 101 254 -6 736 292 111 16 chr6 160406605 160407114 -22008128 + L2 LINE L2 2617 3221 -92 943 276 53 22 chr6 160407119 160407438 -22007804 - LTR16A LTR ERVL -27 423 95 2591 170 60 110 chr6 160407596 160408361 -22006881 + LTR8A LTR ERV1 1 727 0 831 244 81 0 chr6 160409093 160409290 -22005952 - MIR SINE MIR -44 218 6 34 24 0 0 chr6 160409338 160409379 -22005863 + AT_rich Low_complexity Low_complexity 1 41 0 402 276 87 73 chr6 160409379 160410095 -22005147 - L1ME4a LINE L1 -12 6109 5384 600 152 0 0 chr6 160410133 160410225 -22005017 - FLAM_C SINE Alu -24 119 28 1944 159 42 71 chr6 160410260 160410684 -22004558 + MER31B LTR ERV1 1 411 -55 2759 139 124 4 chr6 160410684 160411182 -22004060 + LTR64 LTR ERVK 1 558 0 1944 159 42 71 chr6 160411182 160411235 -22004007 + MER31B LTR ERV1 411 464 -2 231 211 0 99 chr6 160411401 160411472 -22003770 - MER91C DNA MER1_type -24 116 53 5489 164 93 0 chr6 160411473 160412406 -22002836 - LTR28 LTR ERV1 0 1020 1 205 265 44 88 chr6 160412441 160412460 -22002782 + MIR SINE MIR 95 113 -149 2812 117 26 9 chr6 160412460 160412879 -22002363 + MSTB LTR MaLR 1 426 0 205 265 44 88 chr6 160412879 160412927 -22002315 + MIR SINE MIR 113 159 -103 208 302 115 10 chr6 160413371 160413467 -22001775 + MIR SINE MIR 157 262 0 575 334 112 40 chr6 160413793 160413933 -22001309 - L1M4 LINE L1 -2153 3993 3864 979 205 54 0 chr6 160413933 160414157 -22001085 - MER46A DNA MER2_type 0 236 1 575 334 112 40 chr6 160414157 160414561 -22000681 - L1M4 LINE L1 -2282 3864 3410 649 167 16 70 chr6 160414561 160414744 -22000498 + MLT1B LTR MaLR 121 390 0 910 120 0 42 chr6 160414795 160414937 -22000305 + FRAM SINE Alu 21 156 -20 3024 60 0 3 chr6 160415616 160415998 -21999244 - L1PA8 LINE L1 0 6172 5792 191 176 0 0 chr6 160416218 160416252 -21998990 - MIR SINE MIR -13 249 216 250 281 0 16 chr6 160416257 160416321 -21998921 + MLT1C LTR MaLR 404 466 -1 982 179 28 0 chr6 160416633 160416812 -21998430 - MER5A DNA MER1_type 0 189 6 258 243 29 68 chr6 160416892 160416995 -21998247 + MIR SINE MIR 163 261 -1 236 248 57 57 chr6 160417434 160417539 -21997703 + MER5C DNA MER1_type 2 106 -218 623 145 15 46 chr6 160417786 160417917 -21997325 - MER65A LTR ERV1 0 445 319 28 48 0 0 chr6 160417928 160417970 -21997272 + AT_rich Low_complexity Low_complexity 1 42 0 313 164 0 18 chr6 160417970 160418025 -21997217 + MER65A LTR ERV1 316 369 -76 1147 113 0 6 chr6 160418055 160418214 -21997028 - MER65A LTR ERV1 -168 277 120 1701 183 37 11 chr6 160418214 160418564 -21996678 + L1MB4 LINE L1 5822 6180 0 27 29 0 0 chr6 160418607 160418641 -21996601 + AT_rich Low_complexity Low_complexity 1 34 0 333 228 28 0 chr6 160418676 160418783 -21996459 + L1MC4 LINE L1 2006 6983 -1339 383 152 15 15 chr6 160419224 160419290 -21995952 - THE1C LTR MaLR 0 375 310 * 901 131 81 12 chr6 160419281 160419459 -21995783 - THE1C LTR MaLR -208 167 2 1620 144 59 22 chr6 160419459 160419730 -21995512 - AluJo SINE Alu -31 281 1 484 234 15 36 chr6 160420693 160420830 -21994412 + MIR SINE MIR 108 241 -21 202 354 23 54 chr6 160420872 160421002 -21994240 + L2 LINE L2 2756 2881 -433 3268 108 32 2 chr6 160421054 160421526 -21993716 + LTR15 LTR ERV1 1 486 -7 208 345 76 7 chr6 160421529 160421674 -21993568 + L2 LINE L2 2937 3091 -181 255 79 0 0 chr6 160421839 160421877 -21993365 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 271 183 28 14 chr6 160422985 160423056 -21992186 - L1MD3 LINE L1 -11 7984 7913 1345 193 39 68 chr6 160423171 160423494 -21991748 + MLT1A2 LTR MaLR 1 341 -55 2042 151 3 0 chr6 160423494 160423865 -21991377 - AluSq SINE Alu 0 372 1 409 160 0 13 chr6 160423865 160423940 -21991302 + MLT1A2 LTR MaLR 301 374 0 180 0 0 0 chr6 160424229 160424249 -21990993 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 515 241 0 7 chr6 160425706 160426006 -21989236 + (TG)n Simple_repeat Simple_repeat 1 298 0 196 299 201 17 chr6 160426226 160426694 -21988548 - L2 LINE L2 -714 2600 2047 489 223 0 0 chr6 160426764 160426867 -21988375 - MIR SINE MIR -57 205 103 259 214 0 0 chr6 160427320 160427376 -21987866 + MIR SINE MIR 140 195 -67 216 311 27 27 chr6 160427414 160427488 -21987754 - MIR SINE MIR -113 95 22 470 205 66 33 chr6 160429155 160429277 -21985965 - MER63 DNA MER1_type -84 752 1 1070 221 70 81 chr6 160429652 160429933 -21985309 - MER39 LTR ERV1 0 687 404 2355 127 33 25 chr6 160429933 160430294 -21984948 - THE1B LTR MaLR 0 364 1 1070 221 70 81 chr6 160430294 160430535 -21984707 - MER39 LTR ERV1 -283 404 4 3400 145 88 12 chr6 160430654 160431232 -21984010 - LTR26E LTR ERV1 0 622 1 1476 197 266 21 chr6 160431768 160432169 -21983073 - LTR48 LTR ERV1 -9 778 476 1983 140 14 7 chr6 160432169 160432461 -21982781 - AluJo SINE Alu -12 300 7 1476 197 266 21 chr6 160432461 160432664 -21982578 - LTR48 LTR ERV1 -311 476 4 221 56 0 28 chr6 160433712 160433748 -21981494 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2918 32 29 0 chr6 160433748 160434089 -21981153 - L1PA3 LINE L1 -24 6131 5781 * 3525 18 0 0 chr6 160434086 160434479 -21980763 + L1PA3 LINE L1 5392 5784 -371 369 336 50 45 chr6 160434523 160434880 -21980362 + L2 LINE L2 2246 2604 -710 2866 140 38 7 chr6 160435158 160435609 -21979633 + LTR48B LTR ERV1 180 644 0 209 179 0 0 chr6 160435855 160435894 -21979348 + (CCA)n Simple_repeat Simple_repeat 3 41 0 22 56 0 0 chr6 160436072 160436108 -21979134 + AT_rich Low_complexity Low_complexity 1 36 0 585 289 81 87 chr6 160437002 160437555 -21977687 - L1ME3A LINE L1 -5 6148 5599 1292 296 78 0 chr6 160437555 160437964 -21977278 + LTR16A LTR ERVL 1 441 -9 877 326 44 35 chr6 160438010 160438780 -21976462 - L1MEd LINE L1 -4908 1211 465 950 117 31 0 chr6 160439226 160439354 -21975888 + FLAM_C SINE Alu 1 132 -1 21 0 0 0 chr6 160440098 160440119 -21975123 + AT_rich Low_complexity Low_complexity 1 21 0 432 272 20 0 chr6 160440661 160440808 -21974434 - L1ME3A LINE L1 -989 5140 4991 1671 280 127 17 chr6 160440916 160441912 -21973330 - L1ME3A LINE L1 -2147 3982 2878 704 299 221 5 chr6 160441914 160442497 -21972745 - L1ME3A LINE L1 -3302 2827 2119 24 67 0 0 chr6 160442566 160442611 -21972631 + AT_rich Low_complexity Low_complexity 1 45 0 840 163 0 30 chr6 160442825 160442960 -21972282 + FLAM_A SINE Alu 1 131 -2 596 236 64 77 chr6 160443011 160443401 -21971841 - L1ME3A LINE L1 -4890 1229 845 273 262 10 39 chr6 160443468 160443571 -21971671 - L1ME3A LINE L1 -5286 833 734 2367 100 7 0 chr6 160444176 160444545 -21970697 - AluSx SINE Alu 0 373 3 971 180 0 30 chr6 160444547 160444714 -21970528 - FRAM SINE Alu -4 162 1 214 179 0 0 chr6 160445882 160445921 -21969321 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 2214 110 7 0 chr6 160446502 160446801 -21968441 + AluSc SINE Alu 1 301 -8 2285 113 0 0 chr6 160447252 160447554 -21967688 - AluSq SINE Alu -11 302 1 821 167 67 13 chr6 160447593 160447743 -21967499 - AluJb SINE Alu -23 289 132 305 160 0 0 chr6 160447772 160447822 -21967420 - AluJ/FLAM SINE Alu -239 63 14 340 226 40 56 chr6 160448677 160448833 -21966409 - MIR SINE MIR -45 217 64 183 293 114 57 chr6 160449351 160449474 -21965768 + L2 LINE L2 3141 3270 -2 194 171 26 145 chr6 160450347 160450377 -21964865 - L2 LINE L2 -3 3269 3237 1894 152 24 0 chr6 160450377 160450667 -21964575 - AluJb SINE Alu -15 297 1 194 171 26 145 chr6 160450667 160450712 -21964530 - L2 LINE L2 -35 3237 3203 1451 166 66 10 chr6 160451563 160451852 -21963390 - Charlie4a DNA MER1_type -178 330 26 2571 43 0 0 chr6 160452138 160452437 -21962805 + AluY SINE Alu 1 299 -12 220 303 0 0 chr6 160452673 160452739 -21962503 + (TA)n Simple_repeat Simple_repeat 2 67 0 1932 171 0 3 chr6 160452832 160453137 -21962105 + AluJb SINE Alu 1 304 -8 2035 110 27 30 chr6 160454305 160454606 -21960636 + AluSx SINE Alu 1 300 -12 366 223 143 27 chr6 160454774 160454886 -21960356 - MER63 DNA MER1_type -83 753 3 1684 166 56 9 chr6 160455170 160455507 -21959735 - MLT1A2 LTR MaLR -21 353 1 330 202 64 46 chr6 160455901 160456010 -21959232 + L1MC4 LINE L1 7328 7438 -604 270 239 162 0 chr6 160456003 160456120 -21959122 + L1MC5 LINE L1 7279 7414 -547 * 482 219 172 26 chr6 160456212 160456363 -21958879 + MER5A DNA MER1_type 9 181 -8 226 279 23 23 chr6 160456380 160456466 -21958776 + L1MC4 LINE L1 7625 7710 -332 686 169 49 49 chr6 160457449 160457632 -21957610 - MER5A DNA MER1_type -3 186 4 966 149 7 7 chr6 160458500 160458648 -21956594 - AluJo SINE Alu -39 273 126 24 0 0 0 chr6 160459488 160459512 -21955730 + AT_rich Low_complexity Low_complexity 1 24 0 238 216 78 88 chr6 160460311 160460413 -21954829 - MLT1L LTR MaLR -7 608 508 278 107 0 125 chr6 160460524 160460580 -21954662 + L2 LINE L2 3258 3306 -7 218 263 35 0 chr6 160460625 160460682 -21954560 - MER5A DNA MER1_type -95 94 36 494 328 91 24 chr6 160460719 160460971 -21954271 + L2 LINE L2 2182 2463 -851 2780 111 8 16 chr6 160460971 160461349 -21953893 - THE1C LTR MaLR 0 375 1 494 328 91 24 chr6 160461349 160461425 -21953817 + L2 LINE L2 2463 2532 -782 838 232 32 0 chr6 160461432 160461617 -21953625 + LTR40a LTR ERVL 328 518 -1 489 291 44 40 chr6 160461617 160461844 -21953398 + L2 LINE L2 2934 3161 -152 417 263 95 32 chr6 160462080 160462400 -21952842 - L1ME3A LINE L1 -224 5946 5563 391 253 20 10 chr6 160462543 160462642 -21952600 - MIR SINE MIR -74 134 35 451 280 254 6 chr6 160464365 160464704 -21950538 - LTR33A LTR ERVL -4 519 97 566 236 108 52 chr6 160464984 160465196 -21950046 + MIR SINE MIR 12 235 -27 619 219 23 8 chr6 160468262 160468392 -21946850 + FLAM_A SINE Alu 10 139 -3 2433 144 24 0 chr6 160469244 160469610 -21945632 - MER66A LTR ERV1 0 478 104 3245 72 8 0 chr6 160469610 160470010 -21945232 + MLT2A1 LTR ERVL 1 403 -41 335 275 0 22 chr6 160470013 160470104 -21945138 + L1MC4 LINE L1 6614 6702 -1340 236 132 0 0 chr6 160470108 160470146 -21945096 + MLT2A1 LTR ERVL 390 427 -17 644 24 72 0 chr6 160470148 160470231 -21945011 + MLT2A1 LTR ERVL 356 444 0 362 192 39 26 chr6 160470231 160470309 -21944933 - MER66A LTR ERV1 -373 105 27 669 293 28 9 chr6 160470524 160470736 -21944506 + MIR SINE MIR 47 262 0 502 306 188 43 chr6 160471099 160471837 -21943405 + L3 LINE CR1 676 1520 -57 3371 159 28 79 chr6 160472042 160472824 -21942418 + L1MB7 LINE L1 5423 6164 -20 314 113 210 0 chr6 160473753 160473815 -21941427 - MADE1 DNA Mariner -5 75 1 2648 107 3 0 chr6 160475066 160475429 -21939813 + THE1B LTR MaLR 1 364 0 825 289 97 21 chr6 160475948 160476287 -21938955 - MLT1J2 LTR MaLR -1 449 85 2491 161 13 0 chr6 160476342 160476739 -21938503 + MER57A LTR ERV1 2 403 0 2863 188 19 11 chr6 160477033 160477569 -21937673 + MLT1F LTR MaLR 1 540 -2 247 258 150 17 chr6 160477836 160477956 -21937286 - MIR SINE MIR -69 193 58 822 239 23 18 chr6 160478241 160478459 -21936783 - MIR SINE MIR -28 234 16 211 365 28 9 chr6 160478822 160478929 -21936313 - MER5A DNA MER1_type -2 187 79 1249 176 13 2 chr6 160479069 160479380 -21935862 - MLT1A1 LTR MaLR -2 363 1 8077 191 21 64 chr6 160479694 160481529 -21933713 + MER52A LTR ERV1 1 1755 0 1368 211 125 0 chr6 160481640 160481943 -21933299 + MER58B DNA MER1_type 1 341 0 591 248 56 19 chr6 160483805 160483966 -21931276 - MER45A DNA AcHobo -1 177 11 2326 112 0 0 chr6 160483979 160484274 -21930968 - AluSx SINE Alu -17 295 1 234 239 0 0 chr6 160485153 160485199 -21930043 - MLT1I LTR MaLR -273 136 91 1987 127 7 7 chr6 160486661 160486953 -21928289 - AluSx SINE Alu -20 292 1 204 276 29 38 chr6 160487195 160487300 -21927942 + MIR3 SINE MIR 104 207 -1 271 226 264 0 chr6 160487404 160487510 -21927732 + LTR45 LTR ERV1 1 134 -391 530 264 32 7 chr6 160487583 160487738 -21927504 + LTR45 LTR ERV1 367 525 0 1701 159 7 42 chr6 160487834 160488142 -21927100 + AluJo SINE Alu 3 299 -13 1029 289 184 2 chr6 160488854 160489369 -21925873 + L2 LINE L2 1795 2403 -911 2105 124 7 3 chr6 160489502 160489808 -21925434 + AluSg SINE Alu 1 307 -3 180 77 0 0 chr6 160489883 160489909 -21925333 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 1944 132 26 41 chr6 160490009 160490351 -21924891 + MER1B DNA MER1_type 1 337 0 1586 107 0 0 chr6 160490654 160490860 -21924382 + AluSg SINE Alu 23 228 -82 2153 127 0 0 chr6 160491169 160491461 -21923781 - AluSx SINE Alu -3 309 18 2003 138 11 25 chr6 160492396 160492758 -21922484 + Tigger2 DNA MER2_type 1 357 -2361 5784 152 61 1 chr6 160492764 160493728 -21921514 + L1PB2 LINE L1 4128 5033 -1118 351 0 0 0 chr6 160493728 160493767 -21921475 + (TAA)n Simple_repeat Simple_repeat 2 40 0 5784 152 61 1 chr6 160493767 160494697 -21920545 + L1PB2 LINE L1 5033 6147 -4 2306 91 0 19 chr6 160494740 160495049 -21920193 + AluY SINE Alu 1 303 -8 14586 132 29 15 chr6 160495056 160497379 -21917863 + Tigger2 DNA MER2_type 361 2717 -1 2225 131 3 0 chr6 160497591 160497896 -21917346 - AluSx SINE Alu -6 306 1 206 277 0 0 chr6 160498572 160498619 -21916623 + MIR SINE MIR 81 127 -81 538 271 97 10 chr6 160498632 160498800 -21916442 + MLT1L LTR MaLR 25 216 -399 1839 156 12 90 chr6 160498800 160499223 -21916019 + MLT1B LTR MaLR 1 390 0 538 271 97 10 chr6 160499223 160499261 -21915981 + MLT1L LTR MaLR 216 249 -366 314 286 88 53 chr6 160500561 160500788 -21914454 + L1MEd LINE L1 4 238 -5881 2548 225 54 3 chr6 160500834 160501553 -21913689 - L1ME1 LINE L1 -310 5856 5096 1168 49 0 14 chr6 160501596 160501739 -21913503 + AluY SINE Alu 163 303 -8 874 289 213 12 chr6 160501739 160502503 -21912739 - L2 LINE L2 -687 2627 1710 360 267 65 24 chr6 160503610 160503785 -21911457 - L1MC4a LINE L1 -303 5818 5677 703 133 30 52 chr6 160504085 160504220 -21911022 - FLAM_A SINE Alu -1 132 1 472 268 146 19 chr6 160504357 160504498 -21910744 + MIR SINE MIR 4 181 -81 2182 105 0 3 chr6 160504498 160504822 -21910420 + AluSq SINE Alu 1 323 0 472 268 146 19 chr6 160504822 160504884 -21910358 + MIR SINE MIR 181 234 -28 1803 41 0 14 chr6 160505858 160506077 -21909165 + L1PA7 LINE L1 5934 6149 -5 222 269 92 25 chr6 160506581 160506700 -21908542 + MIR SINE MIR 20 146 -116 1023 129 6 8 chr6 160609870 160612798 -21802444 + BSR/Beta Satellite Satellite 1 2920 -60 909 133 5 0 chr6 160612904 160613322 -21801920 + (CATTC)n Satellite Satellite 1 420 0 375 73 0 0 chr6 160613351 160613406 -21801836 + (CATTC)n Satellite Satellite 1 55 0 906 144 0 0 chr6 160613421 160613601 -21801641 + (CATTC)n Satellite Satellite 1 180 0 792 162 0 0 chr6 160613619 160613786 -21801456 + (CATTC)n Satellite Satellite 4 170 0 1074 72 0 0 chr6 160613801 160613954 -21801288 + (CATTC)n Satellite Satellite 2 154 0 657 139 0 0 chr6 160613968 160614090 -21801152 + (CATTC)n Satellite Satellite 4 125 0 909 145 0 0 chr6 160614105 160614284 -21800958 + (CATTC)n Satellite Satellite 1 179 0 1092 96 0 0 chr6 160614305 160614482 -21800760 + (CATTC)n Satellite Satellite 1 177 0 905 120 0 27 chr6 160614501 160614685 -21800557 + (CATTC)n Satellite Satellite 2 180 0 303 136 0 0 chr6 160614710 160614769 -21800473 + (CATTC)n Satellite Satellite 1 59 0 918 157 0 0 chr6 160614781 160615595 -21799647 + (CATTC)n Satellite Satellite 1 814 0 972 128 0 0 chr6 160615606 160615785 -21799457 + (CATTC)n Satellite Satellite 2 180 0 1296 67 0 0 chr6 160615830 160616010 -21799232 + (CATTC)n Satellite Satellite 1 180 0 909 90 5 53 chr6 160616035 160616223 -21799019 + (CATTC)n Satellite Satellite 1 179 0 720 171 0 0 chr6 160616235 160616454 -21798788 + (CATTC)n Satellite Satellite 1 219 0 914 119 0 27 chr6 160616499 160616684 -21798558 + (CATTC)n Satellite Satellite 1 180 0 993 131 2 5 chr6 160616696 160617275 -21797967 + (CATTC)n Satellite Satellite 1 576 0 879 142 0 0 chr6 160617296 160617472 -21797770 + (CATTC)n Satellite Satellite 2 177 0 882 131 3 14 chr6 160617513 160617873 -21797369 + (CATTC)n Satellite Satellite 1 355 0 990 140 2 0 chr6 160617885 160618478 -21796764 + (CATTC)n Satellite Satellite 1 594 0 903 145 0 0 chr6 160618507 160618759 -21796483 + (CATTC)n Satellite Satellite 1 252 0 933 145 0 0 chr6 160618773 160618952 -21796290 + (CATTC)n Satellite Satellite 2 180 0 492 174 0 0 chr6 160618968 160619089 -21796153 + (CATTC)n Satellite Satellite 2 122 0 891 152 0 0 chr6 160619100 160619641 -21795601 + (CATTC)n Satellite Satellite 1 541 0 1089 101 0 0 chr6 160619662 160619841 -21795401 + (CATTC)n Satellite Satellite 1 179 0 939 136 0 0 chr6 160619853 160620186 -21795056 + (CATTC)n Satellite Satellite 1 333 0 1200 144 3 8 chr6 160620227 160621031 -21794211 + (CATTC)n Satellite Satellite 1 799 0 962 156 2 12 chr6 160621042 160621677 -21793565 + (CATTC)n Satellite Satellite 1 628 0 1065 106 0 0 chr6 160621710 160621890 -21793352 + (CATTC)n Satellite Satellite 1 180 0 873 151 0 0 chr6 160621906 160622130 -21793112 + (CATTC)n Satellite Satellite 1 224 0 1059 145 0 15 chr6 160622143 160622550 -21792692 + (CATTC)n Satellite Satellite 1 401 0 909 145 0 0 chr6 160622561 160622740 -21792502 + (CATTC)n Satellite Satellite 2 180 0 1371 97 0 2 chr6 160622751 160623194 -21792048 + (CATTC)n Satellite Satellite 1 442 0 930 149 0 10 chr6 160623245 160623749 -21791493 + (CATTC)n Satellite Satellite 1 498 0 864 156 0 0 chr6 160623780 160623960 -21791282 + (CATTC)n Satellite Satellite 1 180 0 1119 150 0 4 chr6 160623986 160624510 -21790732 + (CATTC)n Satellite Satellite 1 522 0 894 131 0 0 chr6 160624521 160624689 -21790553 + (CATTC)n Satellite Satellite 2 169 0 741 167 0 0 chr6 160624701 160624920 -21790322 + (CATTC)n Satellite Satellite 1 219 0 1080 143 0 0 chr6 160624961 160625570 -21789672 + (CATTC)n Satellite Satellite 1 609 0 939 143 0 0 chr6 160625585 160625815 -21789427 + (CATTC)n Satellite Satellite 1 230 0 972 133 0 0 chr6 160625830 160626010 -21789232 + (CATTC)n Satellite Satellite 1 180 0 848 142 0 14 chr6 160626036 160626405 -21788837 + (CATTC)n Satellite Satellite 1 363 0 963 124 0 0 chr6 160626416 160626593 -21788649 + (CATTC)n Satellite Satellite 2 178 0 908 138 6 19 chr6 160626646 160627008 -21788234 + (CATTC)n Satellite Satellite 2 358 0 840 156 0 0 chr6 160627023 160627203 -21788039 + (CATTC)n Satellite Satellite 1 180 0 966 135 0 0 chr6 160627230 160627408 -21787834 + (CATTC)n Satellite Satellite 3 180 0 582 160 0 0 chr6 160627424 160627555 -21787687 + (CATTC)n Satellite Satellite 2 132 0 972 139 0 8 chr6 160627568 160628397 -21786845 + (CATTC)n Satellite Satellite 1 822 0 908 149 3 0 chr6 160628438 160628767 -21786475 + (CATTC)n Satellite Satellite 1 330 0 303 85 0 0 chr6 160628796 160628843 -21786399 + (CATTC)n Satellite Satellite 1 47 0 867 147 0 0 chr6 160628854 160629031 -21786211 + (CATTC)n Satellite Satellite 4 180 0 614 138 8 0 chr6 160629048 160629171 -21786071 + (CATTC)n Satellite Satellite 3 126 0 999 101 0 0 chr6 160629186 160629345 -21785897 + (CATTC)n Satellite Satellite 2 160 0 257 227 9 0 chr6 160629361 160629471 -21785771 + (CATTC)n Satellite Satellite 2 112 0 924 141 0 0 chr6 160629482 160629659 -21785583 + (CATTC)n Satellite Satellite 4 180 0 785 137 0 27 chr6 160629685 160629868 -21785374 + (CATTC)n Satellite Satellite 3 180 0 874 126 0 27 chr6 160629895 160630078 -21785164 + (CATTC)n Satellite Satellite 3 180 0 981 123 0 0 chr6 160630089 160630268 -21784974 + (CATTC)n Satellite Satellite 2 180 0 1085 148 0 10 chr6 160630281 160631209 -21784033 + (CATTC)n Satellite Satellite 1 919 0 864 156 0 0 chr6 160631224 160631404 -21783838 + (CATTC)n Satellite Satellite 1 180 0 189 159 0 0 chr6 160631415 160631459 -21783783 + (CATTC)n Satellite Satellite 2 45 0 1092 103 0 0 chr6 160631472 160631646 -21783596 + (CATTC)n Satellite Satellite 4 177 0 600 163 0 0 chr6 160631657 160631786 -21783456 + (CATTC)n Satellite Satellite 4 132 0 930 135 0 0 chr6 160631800 160631978 -21783264 + (CATTC)n Satellite Satellite 2 179 0 960 145 0 25 chr6 160631990 160632249 -21782993 + (CATTC)n Satellite Satellite 2 253 0 948 155 0 0 chr6 160632260 160632739 -21782503 + (CATTC)n Satellite Satellite 1 479 0 780 178 0 0 chr6 160632779 160632959 -21782283 + (CATTC)n Satellite Satellite 1 180 0 957 164 0 14 chr6 160632970 160633316 -21781926 + (CATTC)n Satellite Satellite 2 342 0 987 160 0 14 chr6 160633330 160633789 -21781453 + (CATTC)n Satellite Satellite 1 452 0 938 114 0 27 chr6 160633800 160633984 -21781258 + (CATTC)n Satellite Satellite 2 180 0 942 158 2 2 chr6 160634005 160634524 -21780718 + (CATTC)n Satellite Satellite 1 519 0 270 221 0 0 chr6 160634539 160634634 -21780608 + (CATTC)n Satellite Satellite 1 95 0 1109 158 1 2 chr6 160634649 160635608 -21779634 + (CATTC)n Satellite Satellite 1 958 0 1155 116 0 3 chr6 160635639 160636232 -21779010 + (CATTC)n Satellite Satellite 1 590 0 927 152 4 4 chr6 160636244 160636488 -21778754 + (CATTC)n Satellite Satellite 1 244 0 939 165 0 3 chr6 160636501 160636833 -21778409 + (CATTC)n Satellite Satellite 4 332 0 939 148 0 2 chr6 160636844 160637387 -21777855 + (CATTC)n Satellite Satellite 1 541 0 921 158 0 0 chr6 160637399 160637682 -21777560 + (CATTC)n Satellite Satellite 2 284 0 944 150 1 13 chr6 160637729 160638542 -21776700 + (CATTC)n Satellite Satellite 1 803 0 1224 45 0 0 chr6 160638573 160638728 -21776514 + (CATTC)n Satellite Satellite 2 156 0 1155 125 0 6 chr6 160638857 160639313 -21775929 + (GAATG)n Satellite Satellite 1 631 0 1155 89 0 0 chr6 160639313 160639492 -21775750 + (GAATG)n Satellite Satellite 1 179 0 969 123 0 0 chr6 160639752 160639931 -21775311 + (GAATG)n Satellite Satellite 2 180 0 405 151 0 0 chr6 160639953 160640039 -21775203 + (GAATG)n Satellite Satellite 4 89 0 926 107 0 22 chr6 160640062 160640296 -21774946 + (GAATG)n Satellite Satellite 1 228 0 1092 140 0 3 chr6 160640308 160640761 -21774481 + (GAATG)n Satellite Satellite 2 630 0 1095 131 0 1 chr6 160640772 160641601 -21773641 + (GAATG)n Satellite Satellite 1 1007 0 189 159 0 0 chr6 160641617 160641661 -21773581 + (GAATG)n Satellite Satellite 2 45 0 993 123 0 0 chr6 160641672 160641851 -21773391 + (GAATG)n Satellite Satellite 2 180 0 753 172 0 0 chr6 160641892 160642072 -21773170 + (GAATG)n Satellite Satellite 1 180 0 1092 101 0 0 chr6 160642083 160642261 -21772981 + (GAATG)n Satellite Satellite 2 179 0 930 144 0 0 chr6 160642272 160642452 -21772790 + (GAATG)n Satellite Satellite 1 180 0 924 139 0 7 chr6 160642468 160642998 -21772244 + (GAATG)n Satellite Satellite 5 691 0 738 184 0 0 chr6 160643012 160643191 -21772051 + (GAATG)n Satellite Satellite 2 180 0 936 136 0 0 chr6 160643203 160643379 -21771863 + (GAATG)n Satellite Satellite 4 179 0 906 140 0 0 chr6 160643393 160643572 -21771670 + (GAATG)n Satellite Satellite 1 179 0 893 131 6 0 chr6 160643589 160643765 -21771477 + (GAATG)n Satellite Satellite 2 178 0 723 174 0 0 chr6 160643786 160643964 -21771278 + (GAATG)n Satellite Satellite 3 180 0 765 153 0 0 chr6 160644019 160644176 -21771066 + (GAATG)n Satellite Satellite 1 157 0 426 146 0 0 chr6 160644214 160644296 -21770946 + (GAATG)n Satellite Satellite 1 82 0 849 171 0 0 chr6 160644316 160644645 -21770597 + (GAATG)n Satellite Satellite 1 329 0 896 120 0 27 chr6 160644657 160644840 -21770402 + (GAATG)n Satellite Satellite 2 179 0 1101 106 0 0 chr6 160644866 160645046 -21770196 + (GAATG)n Satellite Satellite 1 180 0 864 111 0 0 chr6 160645061 160645205 -21770037 + (GAATG)n Satellite Satellite 2 145 0 1005 148 0 4 chr6 160645236 160645590 -21769652 + (GAATG)n Satellite Satellite 2 531 0 1050 112 0 0 chr6 160645606 160645784 -21769458 + (GAATG)n Satellite Satellite 3 180 0 750 161 0 0 chr6 160645804 160645978 -21769264 + (GAATG)n Satellite Satellite 4 177 0 960 139 2 3 chr6 160645989 160646725 -21768517 + (GAATG)n Satellite Satellite 1 914 0 1038 132 2 2 chr6 160646737 160647345 -21767897 + (GAATG)n Satellite Satellite 1 786 0 986 117 6 0 chr6 160647345 160647524 -21767718 + (GAATG)n Satellite Satellite 1 180 0 180 184 0 0 chr6 160647644 160647693 -21767549 + (GAATG)n Satellite Satellite 2 50 0 723 183 0 0 chr6 160647719 160647899 -21767343 + (GAATG)n Satellite Satellite 1 180 0 948 155 2 2 chr6 160647912 160648292 -21766950 + (GAATG)n Satellite Satellite 1 560 0 960 128 0 0 chr6 160648303 160648482 -21766760 + (GAATG)n Satellite Satellite 2 180 0 999 134 0 0 chr6 160648521 160648862 -21766380 + (GAATG)n Satellite Satellite 1 341 0 857 140 6 0 chr6 160648898 160649076 -21766166 + (GAATG)n Satellite Satellite 2 180 0 1014 116 0 4 chr6 160649097 160649327 -21765915 + (GAATG)n Satellite Satellite 1 228 0 869 124 0 27 chr6 160649347 160649532 -21765710 + (GAATG)n Satellite Satellite 1 180 0 765 168 0 0 chr6 160649577 160649756 -21765486 + (GAATG)n Satellite Satellite 2 180 0 354 159 0 0 chr6 160649767 160649836 -21765406 + (GAATG)n Satellite Satellite 2 70 0 1038 88 0 5 chr6 160649847 160650057 -21765185 + (GAATG)n Satellite Satellite 1 208 0 970 117 6 6 chr6 160650068 160650248 -21764994 + (GAATG)n Satellite Satellite 1 180 0 723 179 0 0 chr6 160650288 160650467 -21764775 + (GAATG)n Satellite Satellite 2 180 0 222 37 0 0 chr6 160650484 160650511 -21764731 + (GAATG)n Satellite Satellite 3 29 0 932 124 6 0 chr6 160650641 160650819 -21764423 + (GAATG)n Satellite Satellite 2 180 0 1050 131 0 0 chr6 160650851 160651128 -21764114 + (GAATG)n Satellite Satellite 1 277 0 927 132 0 0 chr6 160651140 160651314 -21763928 + (GAATG)n Satellite Satellite 2 175 0 1044 134 0 11 chr6 160651360 160651800 -21763442 + (GAATG)n Satellite Satellite 1 435 0 1110 126 0 0 chr6 160651830 160652147 -21763095 + (GAATG)n Satellite Satellite 1 317 0 1038 139 0 0 chr6 160652158 160652502 -21762740 + (GAATG)n Satellite Satellite 1 344 0 849 109 6 33 chr6 160652531 160652714 -21762528 + (GAATG)n Satellite Satellite 2 179 0 663 127 0 0 chr6 160652726 160652844 -21762398 + (GAATG)n Satellite Satellite 2 119 0 963 134 0 0 chr6 160652856 160653035 -21762207 + (GAATG)n Satellite Satellite 1 179 0 1010 132 4 8 chr6 160653157 160658169 -21757073 - BSR/Beta Satellite Satellite 0 4989 1 260 200 22 111 chr6 160658356 160658491 -21756751 + LSAU Satellite Satellite 1 123 -375 562 95 9 9 chr6 160658492 160658597 -21756645 + (GAATG)n Satellite Satellite 3 107 0 1146 87 0 0 chr6 160658615 160658788 -21756454 + (GAATG)n Satellite Satellite 2 174 0 1155 109 0 0 chr6 160658799 160659159 -21756083 + (GAATG)n Satellite Satellite 1 360 0 1086 120 0 2 chr6 160659179 160659647 -21755595 + (GAATG)n Satellite Satellite 1 647 0 1167 109 0 9 chr6 160659658 160660152 -21755090 + (GAATG)n Satellite Satellite 1 668 0 673 175 5 5 chr6 160660167 160660393 -21754849 + (GAATG)n Satellite Satellite 1 226 0 981 117 0 0 chr6 160660404 160660653 -21754589 + (GAATG)n Satellite Satellite 1 249 0 771 163 0 0 chr6 160660665 160660967 -21754275 + (GAATG)n Satellite Satellite 1 302 0 941 123 6 0 chr6 160660994 160661173 -21754069 + (GAATG)n Satellite Satellite 1 180 0 660 181 0 0 chr6 160661186 160661352 -21753890 + (GAATG)n Satellite Satellite 2 167 0 913 148 3 3 chr6 160661368 160661736 -21753506 + (GAATG)n Satellite Satellite 1 368 0 882 137 4 4 chr6 160661748 160662017 -21753225 + (GAATG)n Satellite Satellite 1 269 0 1179 135 2 7 chr6 160662028 160663071 -21752171 + (GAATG)n Satellite Satellite 1 1216 0 1179 94 0 0 chr6 160663071 160663251 -21751991 + (GAATG)n Satellite Satellite 1 180 0 972 124 0 0 chr6 160663862 160664031 -21751211 + (GAATG)n Satellite Satellite 5 173 0 634 179 6 6 chr6 160664045 160664224 -21751018 + (GAATG)n Satellite Satellite 2 180 0 1116 120 2 3 chr6 160664251 160664724 -21750518 + (GAATG)n Satellite Satellite 1 652 0 236 35 0 0 chr6 160664736 160664765 -21750477 + (TAATG)n Simple_repeat Simple_repeat 1 29 0 1191 116 0 2 chr6 160664765 160665125 -21750117 + (GAATG)n Satellite Satellite 1 540 0 1029 132 3 10 chr6 160665150 160665693 -21749549 + (GAATG)n Satellite Satellite 1 718 0 1044 119 0 0 chr6 160665714 160665891 -21749351 + (GAATG)n Satellite Satellite 4 180 0 942 135 0 0 chr6 160665913 160666091 -21749151 + (GAATG)n Satellite Satellite 3 180 0 939 135 3 17 chr6 160666111 160666475 -21748767 + (GAATG)n Satellite Satellite 1 358 0 183 42 0 0 chr6 160666486 160666510 -21748732 + (GAATG)n Satellite Satellite 4 27 0 989 94 11 11 chr6 160666533 160666713 -21748529 + (GAATG)n Satellite Satellite 1 180 0 1125 106 0 0 chr6 160666728 160666908 -21748334 + (GAATG)n Satellite Satellite 1 180 0 1011 104 0 0 chr6 160666939 160667182 -21748060 + (GAATG)n Satellite Satellite 1 243 0 1071 134 1 10 chr6 160667207 160668021 -21747221 + (GAATG)n Satellite Satellite 3 976 0 983 129 4 0 chr6 160668082 160668375 -21746867 + (GAATG)n Satellite Satellite 1 294 0 951 132 0 0 chr6 160668416 160668644 -21746598 + (GAATG)n Satellite Satellite 1 228 0 857 120 0 22 chr6 160668661 160668890 -21746352 + (GAATG)n Satellite Satellite 1 223 0 1254 124 1 14 chr6 160668901 160669539 -21745703 + (GAATG)n Satellite Satellite 1 807 0 966 144 3 0 chr6 160669552 160670173 -21745069 + (GAATG)n Satellite Satellite 1 623 0 1017 152 0 4 chr6 160670194 160670659 -21744583 + (GAATG)n Satellite Satellite 1 642 0 1017 128 0 0 chr6 160670659 160670839 -21744403 + (GAATG)n Satellite Satellite 1 180 0 706 150 0 39 chr6 160670904 160671164 -21744078 + (GAATG)n Satellite Satellite 1 249 0 1113 131 0 19 chr6 160671184 160671549 -21743693 + (GAATG)n Satellite Satellite 1 359 0 1113 114 0 0 chr6 160671264 160671550 -21743692 + (GAATG)n Satellite Satellite 1 286 0 1131 131 0 0 chr6 160671562 160672304 -21742938 + (GAATG)n Satellite Satellite 1 742 0 1008 114 0 22 chr6 160672317 160672763 -21742479 + (GAATG)n Satellite Satellite 1 436 0 768 158 0 0 chr6 160672775 160672946 -21742296 + (GAATG)n Satellite Satellite 4 174 0 990 162 0 2 chr6 160672957 160673436 -21741806 + (GAATG)n Satellite Satellite 1 658 0 942 140 0 0 chr6 160673454 160673633 -21741609 + (GAATG)n Satellite Satellite 2 180 0 246 81 0 0 chr6 160673646 160673683 -21741559 + (GAATG)n Satellite Satellite 2 38 0 727 146 0 39 chr6 160673694 160673954 -21741288 + (GAATG)n Satellite Satellite 1 249 0 1020 140 4 0 chr6 160673972 160674315 -21740927 + (GAATG)n Satellite Satellite 3 520 0 1170 126 2 14 chr6 160674327 160675073 -21740169 + (GAATG)n Satellite Satellite 1 913 0 1170 95 0 0 chr6 160675073 160675252 -21739990 + (GAATG)n Satellite Satellite 2 180 0 813 152 0 0 chr6 160675554 160675725 -21739517 + (GAATG)n Satellite Satellite 4 174 0 912 133 0 0 chr6 160675758 160675938 -21739304 + (GAATG)n Satellite Satellite 1 180 0 519 201 0 0 chr6 160675953 160676112 -21739130 + (GAATG)n Satellite Satellite 2 160 0 714 175 0 0 chr6 160676123 160676300 -21738942 + (GAATG)n Satellite Satellite 4 180 0 1080 131 0 3 chr6 160676314 160676803 -21738439 + (GAATG)n Satellite Satellite 2 666 0 744 173 0 0 chr6 160676819 160676998 -21738244 + (GAATG)n Satellite Satellite 1 179 0 252 149 0 0 chr6 160677011 160677058 -21738184 + (GAATG)n Satellite Satellite 1 47 0 949 140 4 8 chr6 160677165 160680404 -21734838 + BSR/Beta Satellite Satellite 1 3226 -39 939 109 0 0 chr6 160680404 160680569 -21734673 + (CATTC)n Satellite Satellite 5 169 0 1035 128 0 0 chr6 160680581 160680865 -21734377 + (CATTC)n Satellite Satellite 1 284 0 996 135 0 16 chr6 160680886 160681197 -21734045 + (CATTC)n Satellite Satellite 1 305 0 770 159 0 6 chr6 160681208 160681378 -21733864 + (CATTC)n Satellite Satellite 4 172 0 954 123 0 0 chr6 160681389 160681560 -21733682 + (CATTC)n Satellite Satellite 4 174 0 767 149 6 0 chr6 160681572 160681740 -21733502 + (CATTC)n Satellite Satellite 2 170 0 186 118 0 0 chr6 160681755 160681789 -21733453 + (CATTC)n Satellite Satellite 1 34 0 795 115 0 0 chr6 160681801 160681940 -21733302 + (CATTC)n Satellite Satellite 2 140 0 1152 109 0 11 chr6 160681979 160682429 -21732813 + (CATTC)n Satellite Satellite 1 444 0 1101 119 0 8 chr6 160682444 160682804 -21732438 + (CATTC)n Satellite Satellite 1 358 0 780 159 0 0 chr6 160682820 160682996 -21732246 + (CATTC)n Satellite Satellite 2 177 0 1008 143 0 8 chr6 160683010 160683538 -21731704 + (CATTC)n Satellite Satellite 1 524 0 805 141 0 27 chr6 160683594 160683779 -21731463 + (CATTC)n Satellite Satellite 1 180 0 180 184 0 0 chr6 160683800 160683849 -21731393 + (CATTC)n Satellite Satellite 2 50 0 972 126 0 0 chr6 160683866 160684040 -21731202 + (CATTC)n Satellite Satellite 3 176 0 721 128 0 53 chr6 160684061 160684248 -21730994 + (CATTC)n Satellite Satellite 3 179 0 1062 139 0 0 chr6 160684265 160684909 -21730333 + (CATTC)n Satellite Satellite 1 644 0 1125 140 0 4 chr6 160684930 160685604 -21729638 + (CATTC)n Satellite Satellite 1 671 0 820 112 0 53 chr6 160685626 160685813 -21729429 + (CATTC)n Satellite Satellite 3 179 0 1191 136 0 1 chr6 160685830 160686534 -21728708 + (CATTC)n Satellite Satellite 1 702 0 567 156 0 0 chr6 160686545 160686667 -21728575 + (CATTC)n Satellite Satellite 2 123 0 843 156 0 0 chr6 160686769 160686948 -21728294 + (CATTC)n Satellite Satellite 2 180 0 1041 150 0 12 chr6 160686979 160687523 -21727719 + (CATTC)n Satellite Satellite 1 537 0 1083 107 0 0 chr6 160687535 160687713 -21727529 + (CATTC)n Satellite Satellite 3 180 0 860 154 0 16 chr6 160687756 160688085 -21727157 + (CATTC)n Satellite Satellite 1 323 0 1137 103 0 0 chr6 160688098 160688448 -21726794 + (CATTC)n Satellite Satellite 1 350 0 858 152 0 0 chr6 160688479 160688801 -21726441 + (CATTC)n Satellite Satellite 1 322 0 1128 137 0 9 chr6 160688817 160689260 -21725982 + (CATTC)n Satellite Satellite 1 439 0 1155 94 0 0 chr6 160689271 160689451 -21725791 + (CATTC)n Satellite Satellite 1 180 0 867 156 0 0 chr6 160689477 160689656 -21725586 + (CATTC)n Satellite Satellite 2 180 0 906 160 0 6 chr6 160689667 160690015 -21725227 + (CATTC)n Satellite Satellite 2 347 0 978 113 0 0 chr6 160690027 160690233 -21725009 + (CATTC)n Satellite Satellite 1 206 0 966 135 0 0 chr6 160690263 160690441 -21724801 + (CATTC)n Satellite Satellite 3 180 0 735 174 0 0 chr6 160690452 160690630 -21724612 + (CATTC)n Satellite Satellite 2 179 0 993 167 0 4 chr6 160690670 160691202 -21724040 + (CATTC)n Satellite Satellite 1 530 0 1029 128 0 0 chr6 160691230 160691600 -21723642 + (CATTC)n Satellite Satellite 1 370 0 1101 142 0 13 chr6 160691626 160692379 -21722863 + (CATTC)n Satellite Satellite 1 742 0 1104 124 0 16 chr6 160692391 160693805 -21721437 + (CATTC)n Satellite Satellite 1 1390 0 459 189 0 0 chr6 160693820 160693947 -21721295 + (CATTC)n Satellite Satellite 3 129 0 1035 117 0 0 chr6 160693963 160694143 -21721099 + (CATTC)n Satellite Satellite 1 180 0 1044 127 2 27 chr6 160694159 160694687 -21720555 + (CATTC)n Satellite Satellite 1 514 0 972 152 0 5 chr6 160694698 160695685 -21719557 + (CATTC)n Satellite Satellite 1 981 0 1095 117 0 0 chr6 160695722 160696030 -21719212 + (CATTC)n Satellite Satellite 1 308 0 996 114 0 31 chr6 160696042 160696411 -21718831 + (CATTC)n Satellite Satellite 2 358 0 972 160 0 3 chr6 160696422 160696778 -21718464 + (CATTC)n Satellite Satellite 2 356 0 843 171 0 12 chr6 160696789 160697225 -21718017 + (CATTC)n Satellite Satellite 1 430 0 1146 143 0 10 chr6 160697236 160697841 -21717401 + (CATTC)n Satellite Satellite 1 599 0 1275 54 0 0 chr6 160697852 160698020 -21717222 + (CATTC)n Satellite Satellite 2 169 0 908 121 0 21 chr6 160698032 160698275 -21716967 + (CATTC)n Satellite Satellite 1 237 0 869 151 0 22 chr6 160698333 160698796 -21716446 + (CATTC)n Satellite Satellite 1 453 0 825 186 0 0 chr6 160698833 160699141 -21716101 + (CATTC)n Satellite Satellite 1 308 0 993 123 0 0 chr6 160699152 160699331 -21715911 + (CATTC)n Satellite Satellite 2 180 0 784 141 0 27 chr6 160699342 160699526 -21715716 + (CATTC)n Satellite Satellite 2 180 0 240 175 0 0 chr6 160699547 160699610 -21715632 + (CATTC)n Satellite Satellite 2 64 0 1029 153 0 4 chr6 160699622 160700343 -21714899 + (CATTC)n Satellite Satellite 1 718 0 939 134 0 0 chr6 160700362 160700541 -21714701 + (CATTC)n Satellite Satellite 2 180 0 723 179 0 0 chr6 160700567 160700746 -21714496 + (CATTC)n Satellite Satellite 2 180 0 399 62 15 15 chr6 160700757 160700822 -21714420 + (CATTC)n Satellite Satellite 2 66 0 333 153 0 0 chr6 160700940 160701012 -21714230 + (CATTC)n Satellite Satellite 4 75 0 868 105 0 53 chr6 160701027 160701217 -21714025 + (CATTC)n Satellite Satellite 1 180 0 999 149 0 9 chr6 160701238 160701767 -21713475 + (CATTC)n Satellite Satellite 1 524 0 348 192 0 0 chr6 160701778 160701877 -21713365 + (CATTC)n Satellite Satellite 2 100 0 1005 128 0 0 chr6 160701892 160702072 -21713170 + (CATTC)n Satellite Satellite 1 180 0 906 137 0 0 chr6 160702098 160702421 -21712821 + (CATTC)n Satellite Satellite 1 323 0 951 133 0 12 chr6 160702433 160702852 -21712390 + (CATTC)n Satellite Satellite 1 414 0 1209 113 0 0 chr6 160702887 160703241 -21712001 + (CATTC)n Satellite Satellite 1 354 0 1041 140 0 15 chr6 160703253 160703716 -21711526 + (CATTC)n Satellite Satellite 1 456 0 829 135 6 6 chr6 160703728 160703906 -21711336 + (CATTC)n Satellite Satellite 2 179 0 399 113 0 0 chr6 160703918 160703989 -21711253 + (CATTC)n Satellite Satellite 2 72 0 792 145 0 0 chr6 160704002 160704161 -21711081 + (CATTC)n Satellite Satellite 1 159 0 762 167 0 0 chr6 160704187 160704367 -21710875 + (CATTC)n Satellite Satellite 1 180 0 1110 100 0 0 chr6 160704397 160704577 -21710665 + (CATTC)n Satellite Satellite 1 180 0 918 140 0 0 chr6 160704602 160704781 -21710461 + (CATTC)n Satellite Satellite 1 179 0 1106 139 0 4 chr6 160704798 160705303 -21709939 + (CATTC)n Satellite Satellite 1 502 0 939 139 0 0 chr6 160705338 160705518 -21709724 + (CATTC)n Satellite Satellite 1 180 0 1017 125 0 0 chr6 160705531 160705788 -21709454 + (CATTC)n Satellite Satellite 1 257 0 996 113 0 0 chr6 160705806 160706060 -21709182 + (CATTC)n Satellite Satellite 1 254 0 1122 100 0 0 chr6 160706073 160706253 -21708989 + (CATTC)n Satellite Satellite 1 180 0 944 119 4 17 chr6 160706279 160706571 -21708671 + (CATTC)n Satellite Satellite 1 288 0 1152 121 0 16 chr6 160706597 160707327 -21707915 + (CATTC)n Satellite Satellite 1 718 0 1146 95 0 0 chr6 160707338 160707517 -21707725 + (CATTC)n Satellite Satellite 2 180 0 987 114 0 37 chr6 160707529 160707922 -21707320 + (CATTC)n Satellite Satellite 1 378 0 893 139 0 22 chr6 160707933 160708407 -21706835 + (CATTC)n Satellite Satellite 1 463 0 990 93 0 0 chr6 160708433 160708632 -21706610 + (CATTC)n Satellite Satellite 1 199 0 738 165 0 0 chr6 160708648 160708864 -21706378 + (CATTC)n Satellite Satellite 1 216 0 882 144 0 0 chr6 160708877 160709057 -21706185 + (CATTC)n Satellite Satellite 1 180 0 826 154 0 22 chr6 160709072 160709522 -21705720 + (CATTC)n Satellite Satellite 1 439 0 1164 75 0 0 chr6 160709549 160709767 -21705475 + (CATTC)n Satellite Satellite 1 218 0 969 152 3 3 chr6 160709792 160710147 -21705095 + (CATTC)n Satellite Satellite 1 356 0 1122 115 0 2 chr6 160710212 160710784 -21704458 + (CATTC)n Satellite Satellite 1 570 0 771 164 0 0 chr6 160710795 160710966 -21704276 + (CATTC)n Satellite Satellite 4 174 0 906 112 2 57 chr6 160710983 160711535 -21703707 + (CATTC)n Satellite Satellite 1 521 0 752 152 6 0 chr6 160711553 160711718 -21703524 + (CATTC)n Satellite Satellite 2 167 0 513 110 0 0 chr6 160711758 160711840 -21703402 + (CATTC)n Satellite Satellite 4 85 0 1071 134 0 1 chr6 160711851 160712878 -21702364 + (CATTC)n Satellite Satellite 1 1025 0 1086 136 0 6 chr6 160712903 160713261 -21701981 + (CATTC)n Satellite Satellite 4 357 0 1035 125 0 5 chr6 160713282 160713909 -21701333 + (CATTC)n Satellite Satellite 1 624 0 657 190 0 0 chr6 160713932 160714106 -21701136 + (CATTC)n Satellite Satellite 2 175 0 936 128 0 0 chr6 160714142 160714321 -21700921 + (CATTC)n Satellite Satellite 2 180 0 692 151 0 27 chr6 160714341 160714526 -21700716 + (CATTC)n Satellite Satellite 1 180 0 960 133 0 0 chr6 160714556 160714736 -21700506 + (CATTC)n Satellite Satellite 1 180 0 1059 99 0 0 chr6 160714786 160714958 -21700284 + (CATTC)n Satellite Satellite 1 172 0 672 169 0 0 chr6 160714969 160715123 -21700119 + (CATTC)n Satellite Satellite 4 157 0 761 156 0 20 chr6 160715136 160715382 -21699860 + (CATTC)n Satellite Satellite 1 240 0 1131 94 0 0 chr6 160715416 160715596 -21699646 + (CATTC)n Satellite Satellite 1 180 0 1041 125 0 0 chr6 160715609 160715878 -21699364 + (CATTC)n Satellite Satellite 1 269 0 879 145 0 0 chr6 160715889 160716061 -21699181 + (CATTC)n Satellite Satellite 4 175 0 1412 80 0 6 chr6 160716123 160716434 -21698808 + (CATTC)n Satellite Satellite 3 310 0 852 156 0 0 chr6 160716467 160716647 -21698595 + (CATTC)n Satellite Satellite 1 180 0 997 112 6 6 chr6 160716679 160716857 -21698385 + (CATTC)n Satellite Satellite 3 180 0 1161 142 0 11 chr6 160716873 160717222 -21698020 + (CATTC)n Satellite Satellite 2 346 0 1065 131 0 12 chr6 160717233 160717662 -21697580 + (CATTC)n Satellite Satellite 1 423 0 951 148 0 5 chr6 160717687 160718097 -21697145 + (CATTC)n Satellite Satellite 1 407 0 986 122 0 6 chr6 160718117 160718298 -21696944 + (CATTC)n Satellite Satellite 1 180 0 990 136 0 9 chr6 160718324 160718883 -21696359 + (CATTC)n Satellite Satellite 1 553 0 806 140 0 27 chr6 160718939 160719199 -21696043 + (CATTC)n Satellite Satellite 1 252 0 856 105 0 53 chr6 160719224 160719414 -21695828 + (CATTC)n Satellite Satellite 1 180 0 900 156 0 0 chr6 160719611 160719791 -21695451 + (GAATG)n Satellite Satellite 1 180 0 1158 142 1 7 chr6 160719802 160720301 -21694941 + (GAATG)n Satellite Satellite 1 673 0 1158 95 0 0 chr6 160720301 160720480 -21694762 + (GAATG)n Satellite Satellite 2 180 0 984 124 0 0 chr6 160720782 160720960 -21694282 + (GAATG)n Satellite Satellite 2 179 0 1119 124 3 3 chr6 160720974 160721288 -21693954 + (GAATG)n Satellite Satellite 1 314 0 984 134 0 13 chr6 160721301 160722146 -21693096 + (GAATG)n Satellite Satellite 1 1008 0 1023 148 0 7 chr6 160722191 160722432 -21692810 + (GAATG)n Satellite Satellite 1 708 0 1023 139 0 0 chr6 160722432 160722725 -21692517 + (GAATG)n Satellite Satellite 1 293 0 905 124 0 27 chr6 160722741 160722926 -21692316 + (GAATG)n Satellite Satellite 1 180 0 848 154 3 0 chr6 160722941 160723280 -21691962 + (GAATG)n Satellite Satellite 1 340 0 852 151 0 0 chr6 160723291 160723470 -21691772 + (GAATG)n Satellite Satellite 1 179 0 960 126 0 0 chr6 160723495 160723669 -21691573 + (GAATG)n Satellite Satellite 2 175 0 840 170 0 0 chr6 160723680 160724007 -21691235 + (GAATG)n Satellite Satellite 1 327 0 1002 122 0 0 chr6 160724020 160724200 -21691042 + (GAATG)n Satellite Satellite 1 180 0 683 157 0 27 chr6 160724215 160724400 -21690842 + (GAATG)n Satellite Satellite 1 180 0 1122 100 0 0 chr6 160724415 160724595 -21690647 + (GAATG)n Satellite Satellite 1 180 0 954 136 0 0 chr6 160724643 160724869 -21690373 + (GAATG)n Satellite Satellite 1 226 0 963 129 0 0 chr6 160724881 160725059 -21690183 + (GAATG)n Satellite Satellite 2 179 0 591 171 0 0 chr6 160725073 160725202 -21690040 + (GAATG)n Satellite Satellite 4 132 0 1011 104 0 0 chr6 160725213 160725377 -21689865 + (GAATG)n Satellite Satellite 4 167 0 1005 140 0 9 chr6 160725390 160726229 -21689013 + (GAATG)n Satellite Satellite 1 1007 0 1134 111 0 4 chr6 160726240 160726509 -21688733 + (GAATG)n Satellite Satellite 2 446 0 208 143 0 0 chr6 160726516 160726551 -21688691 + (TAATG)n Simple_repeat Simple_repeat 5 39 0 1239 131 0 0 chr6 160726551 160726910 -21688332 + (GAATG)n Satellite Satellite 1 359 0 1047 150 0 16 chr6 160726948 160727564 -21687678 + (GAATG)n Satellite Satellite 1 605 0 918 144 0 0 chr6 160727575 160727755 -21687487 + (GAATG)n Satellite Satellite 1 180 0 720 168 0 0 chr6 160727791 160727964 -21687278 + (GAATG)n Satellite Satellite 2 174 0 1169 118 4 11 chr6 160727990 160728354 -21686888 + (GAATG)n Satellite Satellite 1 540 0 929 115 0 27 chr6 160728386 160728569 -21686673 + (GAATG)n Satellite Satellite 1 178 0 492 174 0 0 chr6 160728582 160728703 -21686539 + (GAATG)n Satellite Satellite 2 122 0 966 135 0 0 chr6 160728719 160728897 -21686345 + (GAATG)n Satellite Satellite 3 180 0 948 142 0 0 chr6 160728919 160729179 -21686063 + (GAATG)n Satellite Satellite 1 260 0 990 143 2 0 chr6 160729208 160729796 -21685446 + (GAATG)n Satellite Satellite 1 589 0 885 139 0 0 chr6 160729808 160730126 -21685116 + (GAATG)n Satellite Satellite 1 318 0 972 133 0 0 chr6 160730152 160730332 -21684910 + (GAATG)n Satellite Satellite 1 180 0 960 154 0 2 chr6 160730372 160730729 -21684513 + (GAATG)n Satellite Satellite 1 534 0 1008 119 0 0 chr6 160730740 160730917 -21684325 + (GAATG)n Satellite Satellite 1 177 0 945 145 0 0 chr6 160730930 160731261 -21683981 + (GAATG)n Satellite Satellite 1 331 0 558 162 0 0 chr6 160731272 160731389 -21683853 + (GAATG)n Satellite Satellite 4 120 0 1218 95 3 3 chr6 160731400 160731756 -21683486 + (GAATG)n Satellite Satellite 1 356 0 1026 117 0 0 chr6 160731792 160731971 -21683271 + (GAATG)n Satellite Satellite 2 180 0 906 171 0 2 chr6 160731982 160732636 -21682606 + (GAATG)n Satellite Satellite 2 831 0 1017 123 0 0 chr6 160732652 160732831 -21682411 + (GAATG)n Satellite Satellite 2 180 0 1146 106 0 0 chr6 160732882 160733121 -21682121 + (GAATG)n Satellite Satellite 1 239 0 1242 106 0 0 chr6 160733133 160733491 -21681751 + (GAATG)n Satellite Satellite 1 358 0 570 140 0 0 chr6 160733502 160733616 -21681626 + (GAATG)n Satellite Satellite 2 115 0 1038 138 3 3 chr6 160733632 160733953 -21681289 + (GAATG)n Satellite Satellite 1 321 0 296 275 60 27 chr6 160833997 160834146 -21581096 + L1ME3A LINE L1 6015 6168 -2 205 182 36 0 chr6 160836017 160836072 -21579170 + GA-rich Low_complexity Low_complexity 3 59 0 719 323 98 18 chr6 160836921 160837086 -21578156 - L2 LINE L2 -32 3281 3131 2218 138 0 0 chr6 160837086 160837398 -21577844 + AluSx SINE Alu 1 312 0 719 323 98 18 chr6 160837398 160837830 -21577412 - L2 LINE L2 -182 3131 2625 192 333 10 31 chr6 160838072 160838168 -21577074 + MIR SINE MIR 44 137 -71 2183 113 3 0 chr6 160838932 160839225 -21576017 + AluSp SINE Alu 1 294 -19 245 250 0 45 chr6 160839287 160839375 -21575867 + GA-rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr6 160839723 160839744 -21575498 + AT_rich Low_complexity Low_complexity 1 21 0 1703 183 7 3 chr6 160840425 160840725 -21574517 - AluJo SINE Alu -11 301 1 249 193 12 48 chr6 160841731 160841814 -21573428 + T-rich Low_complexity Low_complexity 1 80 0 379 249 94 50 chr6 160842327 160842508 -21572734 - L2 LINE L2 -5 3308 3120 397 274 48 0 chr6 160842677 160842801 -21572441 + MIR SINE MIR 104 233 -29 2319 110 0 0 chr6 160843017 160843316 -21571926 - AluSx SINE Alu -13 299 1 188 365 0 14 chr6 160845160 160845234 -21570008 - MIR SINE MIR -112 96 24 1080 122 0 0 chr6 160846550 160846689 -21568553 + AluSq/x SINE Alu 1 139 -174 2081 124 13 83 chr6 160846790 160847066 -21568176 - MLT1B LTR MaLR -30 360 117 2217 112 0 10 chr6 160847066 160847361 -21567881 - AluSq SINE Alu -21 292 1 2081 124 13 83 chr6 160847361 160847471 -21567771 - MLT1B LTR MaLR -273 117 1 306 73 0 0 chr6 160848369 160848410 -21566832 + (TG)n Simple_repeat Simple_repeat 2 42 0 450 0 0 0 chr6 160850096 160850146 -21565096 + (CA)n Simple_repeat Simple_repeat 2 51 0 244 263 66 0 chr6 160850882 160850958 -21564284 + L1ME LINE L1 5738 5818 -303 2371 82 0 3 chr6 160851036 160851327 -21563915 - AluSc SINE Alu -19 290 1 1776 292 113 16 chr6 160851734 160852601 -21562641 - L2 LINE L2 -517 2797 1847 2164 117 3 19 chr6 160853875 160854192 -21561050 - AluSx SINE Alu 0 312 1 264 288 0 0 chr6 160856795 160856875 -21558367 + MIR SINE MIR 53 132 -130 637 253 26 19 chr6 160857135 160857289 -21557953 + MER63A DNA MER1_type 55 209 -1 858 219 10 86 chr6 160857404 160857696 -21557546 - MER46C DNA MER2_type -64 274 5 335 342 95 22 chr6 160857860 160858082 -21557160 + MIR SINE MIR 10 247 -15 1626 136 80 74 chr6 160858123 160858312 -21556930 + MER2 DNA MER2_type 6 199 -146 1610 148 77 54 chr6 160858312 160858610 -21556632 + AluJb SINE Alu 1 305 -7 1626 136 80 74 chr6 160858610 160858758 -21556484 + MER2 DNA MER2_type 199 345 0 236 204 0 20 chr6 160859229 160859278 -21555964 + Charlie8 DNA MER1_type 2370 2417 0 377 236 49 49 chr6 160859324 160859447 -21555795 - MER20B DNA MER1_type -595 188 66 294 274 94 21 chr6 160861006 160861170 -21554072 + MIR SINE MIR 20 192 -70 517 113 27 0 chr6 160861196 160861280 -21553962 - L1PA10 LINE L1 -26 6129 6041 713 243 30 0 chr6 160861498 160861667 -21553575 + LTR33A LTR ERVL 348 521 -2 195 267 46 122 chr6 160861820 160861951 -21553291 - L2 LINE L2 -1 3312 3192 2264 98 3 3 chr6 160862805 160863123 -21552119 - AluSq SINE Alu 0 313 1 23 33 0 0 chr6 160863127 160863157 -21552085 + AT_rich Low_complexity Low_complexity 1 30 0 183 156 0 0 chr6 160863506 160863538 -21551704 + (CAT)n Simple_repeat Simple_repeat 1 32 0 372 43 0 0 chr6 160864731 160864777 -21550465 + (TA)n Simple_repeat Simple_repeat 2 47 0 2281 98 3 3 chr6 160864777 160865072 -21550170 - AluSx SINE Alu -17 295 1 268 272 44 53 chr6 160865078 160865192 -21550050 - L2 LINE L2 -19 3294 3182 4573 116 113 25 chr6 160865224 160865545 -21549697 - Tigger3b DNA MER2_type -1797 1231 940 218 81 27 0 chr6 160865545 160865582 -21549660 + (TGAG)n Simple_repeat Simple_repeat 1 38 0 4573 116 113 25 chr6 160865582 160866074 -21549168 - Tigger3b DNA MER2_type -2088 940 346 233 58 77 0 chr6 160866097 160866149 -21549093 + (TA)n Simple_repeat Simple_repeat 2 57 0 243 239 9 80 chr6 160866191 160866304 -21548938 - L2 LINE L2 -248 3024 2920 1376 177 181 0 chr6 160866549 160866803 -21548439 - AluJb SINE Alu -2 300 1 237 350 11 45 chr6 160866847 160867024 -21548218 + MIR SINE MIR 46 216 -46 245 225 0 108 chr6 160867268 160867317 -21547925 + MIR SINE MIR 34 66 -196 1559 188 139 87 chr6 160867317 160867382 -21547860 - MLT1E2 LTR MaLR 0 626 566 2330 102 3 0 chr6 160867382 160867686 -21547556 + AluSp SINE Alu 1 305 -8 1559 188 139 87 chr6 160867686 160868215 -21547027 - MLT1E2 LTR MaLR -60 566 1 245 225 0 108 chr6 160868215 160868276 -21546966 + MIR SINE MIR 66 132 -130 327 25 0 0 chr6 160868664 160868704 -21546538 + (CA)n Simple_repeat Simple_repeat 1 40 0 225 0 0 0 chr6 160868731 160868756 -21546486 + (TGG)n Simple_repeat Simple_repeat 3 27 0 2357 95 3 0 chr6 160869773 160870068 -21545174 + AluSp SINE Alu 1 296 -17 187 274 86 43 chr6 160870430 160870547 -21544695 - MIR SINE MIR -1 261 140 2087 127 7 3 chr6 160871711 160872011 -21543231 + AluSg SINE Alu 1 301 -9 2266 121 0 0 chr6 160872525 160872831 -21542411 - AluSx SINE Alu -6 306 1 1922 103 0 27 chr6 160873486 160873748 -21541494 - AluSx SINE Alu -57 255 1 213 359 57 0 chr6 160874809 160874915 -21540327 - L2 LINE L2 -31 3282 3171 290 317 0 0 chr6 160875231 160875313 -21539929 + (TG)n Simple_repeat Simple_repeat 1 82 0 686 274 63 14 chr6 160875702 160875925 -21539317 + MIR SINE MIR 15 248 -14 2176 135 0 6 chr6 160875936 160876247 -21538995 - AluSx SINE Alu -3 309 1 1747 149 3 21 chr6 160877616 160877905 -21537337 + AluJo SINE Alu 1 284 -28 695 210 45 40 chr6 160878558 160878671 -21536571 - MIR SINE MIR 0 262 146 216 0 0 0 chr6 160878671 160878695 -21536547 + (CAT)n Simple_repeat Simple_repeat 2 25 0 695 210 45 40 chr6 160878695 160878781 -21536461 - MIR SINE MIR -116 146 62 26 30 0 0 chr6 160879466 160879499 -21535743 + GC_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr6 160879787 160879817 -21535425 + GC_rich Low_complexity Low_complexity 1 30 0 188 269 45 15 chr6 160881975 160882042 -21533200 - MIR3 SINE MIR -14 194 126 1956 42 8 4 chr6 160882527 160882763 -21532479 + AluY SINE Alu 74 310 -1 634 174 168 58 chr6 160884001 160884191 -21531051 - MER58C DNA MER1_type -1 214 4 365 280 220 18 chr6 160884951 160885169 -21530073 + MIR SINE MIR 1 262 0 203 150 17 100 chr6 160885301 160885361 -21529881 - L2 LINE L2 -254 3059 3005 318 242 169 0 chr6 160885432 160885556 -21529686 - MER104 DNA Tc2 -31 149 5 514 288 119 23 chr6 160888347 160888877 -21526365 - L2 LINE L2 -176 3137 2551 2113 130 30 0 chr6 160889178 160889478 -21525764 - AluSx SINE Alu -3 309 1 200 200 18 0 chr6 160889685 160889740 -21525502 + GA-rich Low_complexity Low_complexity 5 60 0 2432 94 0 0 chr6 160890606 160890913 -21524329 + AluSx SINE Alu 1 307 -5 2193 128 0 3 chr6 160891397 160891709 -21523533 - AluSq SINE Alu -2 311 1 939 262 152 24 chr6 160891816 160892549 -21522693 + L2 LINE L2 2474 3312 -1 181 295 95 11 chr6 160893460 160893555 -21521687 + MIR SINE MIR 125 227 -35 209 200 0 0 chr6 160893752 160893792 -21521450 + CT-rich Low_complexity Low_complexity 2 41 0 669 248 48 10 chr6 160894965 160895171 -21520071 - MIR SINE MIR -17 245 32 237 261 174 36 chr6 160895207 160895345 -21519897 - MLT1J LTR MaLR -22 489 333 2663 195 110 21 chr6 160897001 160897846 -21517396 + MER63 DNA MER1_type 6 1037 -24 1406 189 18 32 chr6 160897899 160898180 -21517062 + AluJo SINE Alu 27 303 -9 432 158 0 13 chr6 160898653 160898729 -21516513 + LTR24B LTR ERV1 4 78 -498 657 287 56 45 chr6 160898793 160899152 -21516090 + LTR24B LTR ERV1 207 569 -7 535 263 38 6 chr6 160899256 160899416 -21515826 - LTR33 LTR ERVL -352 169 5 255 287 23 31 chr6 160899872 160900001 -21515241 + CT-rich Low_complexity Low_complexity 2 129 0 2171 100 3 3 chr6 160900928 160901217 -21514025 - AluSq SINE Alu -24 289 1 258 106 0 0 chr6 160901674 160901721 -21513521 + (TA)n Simple_repeat Simple_repeat 2 48 0 1503 113 0 10 chr6 160901721 160901925 -21513317 - AluSg/x SINE Alu -24 286 85 2235 77 14 7 chr6 160902405 160902692 -21512550 + AluSc SINE Alu 1 289 -20 6395 143 27 3 chr6 160902985 160904022 -21511220 - L1MC1 LINE L1 0 6333 5272 8087 105 23 42 chr6 160904028 160905278 -21509964 + Tigger1 DNA MER2_type 1 1227 -1191 2270 129 0 0 chr6 160905278 160905587 -21509655 - AluSx SINE Alu -3 309 1 8087 105 23 42 chr6 160905587 160905633 -21509609 + Tigger1 DNA MER2_type 1227 1272 -1146 6949 119 8 9 chr6 160905631 160906645 -21508597 + Tigger1 DNA MER2_type 1406 2418 0 * 311 224 0 0 chr6 160906645 160906712 -21508530 - L1MC1 LINE L1 -876 5270 5204 23 0 0 0 chr6 160906929 160906952 -21508290 + AT_rich Low_complexity Low_complexity 1 23 0 2400 103 14 11 chr6 160907124 160907482 -21507760 - L1PB4 LINE L1 -3 6153 5795 1269 266 78 34 chr6 160908055 160908692 -21506550 + L1ME2 LINE L1 1455 2131 -4265 1725 162 7 35 chr6 160908692 160909025 -21506217 + AluJo SINE Alu 1 325 0 1269 266 78 34 chr6 160909025 160909119 -21506123 + L1ME2 LINE L1 2131 2219 -4177 578 253 11 17 chr6 160909135 160909313 -21505929 + L1ME2 LINE L1 2460 2636 -3579 480 264 31 0 chr6 160909394 160909523 -21505719 + L1ME2 LINE L1 3468 3600 -2615 2075 128 0 0 chr6 160909678 160910006 -21505236 - AluSx SINE Alu 0 328 1 771 140 10 22 chr6 160910013 160910162 -21505080 - MSTC LTR MaLR -215 150 1 4165 256 43 49 chr6 160910162 160910264 -21504978 + L1ME2 LINE L1 3690 3791 -2442 4551 177 63 9 chr6 160910264 160911116 -21504126 - MER54A LTR ERVL 0 901 4 1527 106 101 0 chr6 160911117 160911344 -21503898 + AluY SINE Alu 44 293 -18 4165 256 43 49 chr6 160911344 160912033 -21503209 + L1ME2 LINE L1 3791 4482 -1751 1705 152 0 74 chr6 160912033 160912342 -21502900 + AluJb SINE Alu 5 290 -22 4165 256 43 49 chr6 160912342 160913134 -21502108 + L1ME2 LINE L1 4482 5277 -956 2010 156 0 3 chr6 160913134 160913435 -21501807 + AluSx SINE Alu 1 300 -12 4165 256 43 49 chr6 160913435 160914400 -21500842 + L1ME2 LINE L1 5277 6224 -9 2093 262 84 11 chr6 160914429 160915096 -21500146 + L1ME3A LINE L1 5435 6150 -20 2385 101 0 0 chr6 160915389 160915696 -21499546 + AluSx SINE Alu 1 307 -5 638 323 39 4 chr6 160916523 160916755 -21498487 - MIR SINE MIR -16 246 7 2149 106 0 25 chr6 160919453 160919773 -21495469 + AluSp SINE Alu 1 312 -1 473 183 96 0 chr6 160922454 160922558 -21492684 - MER81 DNA DNA 0 114 1 217 167 21 0 chr6 160922855 160922903 -21492339 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 481 247 106 68 chr6 160922904 160923244 -21491998 - HAL1 LINE L1 -752 1755 1403 1059 151 49 8 chr6 160924832 160925039 -21490203 - L1MA5A LINE L1 -79 6225 6011 568 294 18 18 chr6 160925414 160925584 -21489658 - MIR3 SINE MIR -21 187 18 227 299 85 40 chr6 160925708 160925885 -21489357 + L2 LINE L2 1276 1460 -1854 259 250 59 15 chr6 160926265 160926333 -21488909 - L2 LINE L2 -2 3270 3200 201 121 0 0 chr6 160927371 160927404 -21487838 + (A)n Simple_repeat Simple_repeat 1 33 0 284 324 102 0 chr6 160928112 160928220 -21487022 + L2 LINE L2 3146 3264 -8 187 225 28 84 chr6 160928371 160928442 -21486800 + L2 LINE L2 3242 3308 -5 214 241 76 38 chr6 160929189 160929268 -21485974 + L2 LINE L2 3230 3311 -2 2166 119 10 13 chr6 160929813 160930124 -21485118 - AluSg SINE Alu 0 310 1 1298 273 131 30 chr6 160930259 160931665 -21483577 + L1ME3 LINE L1 4407 5949 -213 355 324 111 40 chr6 160931678 160931903 -21483339 - MLT1K LTR MaLR -187 401 161 23 0 0 0 chr6 160934839 160934862 -21480380 + AT_rich Low_complexity Low_complexity 1 23 0 252 277 27 36 chr6 160934880 160934992 -21480250 - HAL1b LINE L1 -641 707 597 1150 60 0 0 chr6 160935089 160935222 -21480020 + AluSq/x SINE Alu 1 133 -179 2426 68 0 3 chr6 160935224 160935531 -21479711 + AluY SINE Alu 1 306 -5 237 65 0 0 chr6 160935553 160935584 -21479658 + (A)n Simple_repeat Simple_repeat 1 31 0 1315 150 39 9 chr6 160936414 160936647 -21478595 - Tigger7 DNA MER2_type -1 2490 2251 5313 63 6 17 chr6 160937185 160937559 -21477683 - L1PA7 LINE L1 0 6154 5788 2496 84 0 0 chr6 160937559 160937868 -21477374 - AluY SINE Alu -2 309 1 5313 63 6 17 chr6 160937868 160938144 -21477098 - L1PA7 LINE L1 -366 5788 5511 1726 162 10 27 chr6 160939537 160939834 -21475408 - AluJo SINE Alu -20 292 1 1053 202 91 20 chr6 160939918 160940171 -21475071 + ORSL DNA AcHobo 3 273 -2 2345 91 10 0 chr6 160940545 160940852 -21474390 - AluSq SINE Alu -1 312 3 359 282 100 8 chr6 160941768 160942009 -21473233 - L1M4 LINE L1 -3432 2714 2452 189 322 113 9 chr6 160943263 160943378 -21471864 - MIR SINE MIR -61 201 75 228 253 53 84 chr6 160943747 160943842 -21471400 + MIR SINE MIR 20 111 -151 993 120 0 0 chr6 160944442 160944575 -21470667 - AluSq/x SINE Alu -179 133 1 2032 103 33 0 chr6 160946777 160947070 -21468172 - AluSg SINE Alu 0 302 1 2301 105 0 0 chr6 160947921 160948216 -21467026 - AluSg SINE Alu -14 296 2 418 273 30 23 chr6 160948403 160948535 -21466707 - MLT1L LTR MaLR -114 501 369 2297 97 0 3 chr6 160949725 160950025 -21465217 + AluSg SINE Alu 12 310 0 296 306 35 49 chr6 160950955 160951099 -21464143 - MIR3 SINE MIR -41 167 26 2397 61 10 3 chr6 160951128 160951423 -21463819 - AluY SINE Alu -14 297 1 201 39 0 0 chr6 160951455 160951481 -21463761 + (TG)n Simple_repeat Simple_repeat 2 27 0 2428 75 0 7 chr6 160953955 160954262 -21460980 - AluSq SINE Alu -8 305 1 3666 128 60 3 chr6 160955150 160955453 -21459789 - L1PB1 LINE L1 -33 6118 5834 207 0 0 0 chr6 160955453 160955476 -21459766 + (TA)n Simple_repeat Simple_repeat 2 24 0 3666 128 60 3 chr6 160955476 160955758 -21459484 - L1PB1 LINE L1 -317 5834 5500 323 281 70 43 chr6 160955883 160956068 -21459174 - L2 LINE L2 -6 3307 3118 706 322 72 31 chr6 160956091 160956479 -21458763 - L2 LINE L2 -347 2967 2564 372 160 43 11 chr6 160957950 160958044 -21457198 + CT-rich Low_complexity Low_complexity 3 99 0 1662 169 0 14 chr6 160958047 160958325 -21456917 - AluJb SINE Alu -34 278 5 530 29 15 0 chr6 160958980 160959048 -21456194 + (TC)n Simple_repeat Simple_repeat 1 69 0 2153 115 0 0 chr6 160959068 160959347 -21455895 - AluSx SINE Alu -33 279 1 352 310 85 8 chr6 160959629 160959758 -21455484 - MIR SINE MIR -123 139 1 454 108 0 0 chr6 160959946 160960011 -21455231 - Alu SINE Alu -13 299 235 1054 122 0 0 chr6 160960012 160960151 -21455091 - AluSq/x SINE Alu -173 139 1 325 308 101 24 chr6 160960742 160960911 -21454331 + L1MC/D LINE L1 5443 5624 -2184 341 286 108 106 chr6 160961128 160961648 -21453594 + L2 LINE L2 2341 2861 -453 219 139 0 0 chr6 160961650 160961686 -21453556 + (CA)n Simple_repeat Simple_repeat 2 37 0 238 236 7 193 chr6 160961737 160961877 -21453365 + L2 LINE L2 2929 3042 -230 1454 186 0 27 chr6 160961983 160962269 -21452973 + AluJo SINE Alu 32 310 0 1220 160 185 16 chr6 160962359 160962428 -21452814 - L1MA9 LINE L1 -1 6311 6255 378 0 0 0 chr6 160962428 160962470 -21452772 + (TA)n Simple_repeat Simple_repeat 2 43 0 1220 160 185 16 chr6 160962470 160962673 -21452569 - L1MA9 LINE L1 -57 6255 5987 332 273 0 77 chr6 160963995 160964138 -21451104 - L2 LINE L2 0 3313 3182 559 340 135 8 chr6 160964535 160964905 -21450337 - L2 LINE L2 -675 2639 2223 463 302 104 33 chr6 160964906 160965300 -21449942 - L2 LINE L2 -1222 2092 1671 1965 111 57 0 chr6 160965606 160965886 -21449356 + AluSc SINE Alu 1 296 -13 201 240 20 0 chr6 160972172 160972222 -21443020 - L2 LINE L2 -9 3304 3254 324 329 35 21 chr6 160972532 160972675 -21442567 - MIR3 SINE MIR -45 163 19 2120 125 0 37 chr6 160972678 160972999 -21442243 - AluSx SINE Alu -3 309 1 472 126 35 0 chr6 160973130 160973217 -21442025 - L1MB7 LINE L1 0 6184 6095 1635 175 59 51 chr6 160973228 160973600 -21441642 - L1MB4 LINE L1 -1 6179 5805 23 33 0 0 chr6 160973706 160973736 -21441506 + AT_rich Low_complexity Low_complexity 1 30 0 186 371 0 76 chr6 160973776 160973881 -21441361 + L2 LINE L2 3157 3253 -19 2220 94 30 3 chr6 160973947 160974245 -21440997 + AluSq SINE Alu 1 306 -7 687 144 0 25 chr6 160974582 160974700 -21440542 - L1PB2 LINE L1 -3 6148 6034 387 198 125 10 chr6 160975462 160975558 -21439684 - L1MB4 LINE L1 -269 5911 5805 226 147 0 0 chr6 160976816 160976850 -21438392 - L2 LINE L2 -8 3264 3231 1959 100 0 8 chr6 160977423 160977683 -21437559 + AluSx SINE Alu 52 309 -3 836 241 35 61 chr6 160978571 160978784 -21436458 + MIR SINE MIR 5 211 -51 2219 120 10 0 chr6 160978784 160979092 -21436150 + AluSq SINE Alu 1 311 -2 836 241 35 61 chr6 160979092 160979139 -21436103 + MIR SINE MIR 211 258 -4 347 333 128 0 chr6 160979902 160980058 -21435184 + MIR SINE MIR 57 232 -30 2107 127 37 0 chr6 160981193 160981493 -21433749 + AluSx SINE Alu 1 311 -1 1735 127 62 19 chr6 160982407 160982729 -21432513 - MER46B DNA MER2_type -21 215 5 667 208 42 83 chr6 160983434 160983626 -21431616 + L1MD2 LINE L1 6162 6345 -14 181 273 65 0 chr6 160983979 160984056 -21431186 - MIR SINE MIR -19 243 162 660 250 51 0 chr6 160984669 160984845 -21430397 + MER5A DNA MER1_type 1 185 -4 416 291 127 27 chr6 160985007 160985227 -21430015 + MIR SINE MIR 2 243 -19 2090 148 0 0 chr6 160985406 160985703 -21429539 + AluSx SINE Alu 1 297 -15 450 0 0 0 chr6 160985786 160985836 -21429406 + (TA)n Simple_repeat Simple_repeat 1 50 0 1692 44 5 0 chr6 160985836 160986040 -21429202 - L1PA5 LINE L1 -13 6141 5937 2312 100 0 0 chr6 160986558 160986849 -21428393 + AluSg SINE Alu 1 291 -19 306 0 0 0 chr6 160986926 160986960 -21428282 + (TG)n Simple_repeat Simple_repeat 2 35 0 2251 108 20 0 chr6 160987693 160987988 -21427254 + AluSx SINE Alu 1 301 -11 186 306 16 0 chr6 160988984 160989046 -21426196 - MER5A DNA MER1_type -59 130 68 1502 177 67 69 chr6 160989077 160989466 -21425776 - MLT1B LTR MaLR -2 388 1 372 41 0 0 chr6 160990578 160990627 -21424615 + AluSp/q SINE Alu 250 298 -5 2156 156 25 23 chr6 160990628 160991025 -21424217 - L1MB3 LINE L1 -55 6128 5731 23 33 0 0 chr6 160991123 160991153 -21424089 + AT_rich Low_complexity Low_complexity 1 30 0 225 318 30 0 chr6 160991157 160991223 -21424019 + L2 LINE L2 3201 3268 -4 418 266 58 37 chr6 160991299 160991331 -21423911 + MIR SINE MIR 55 85 -177 2208 88 0 26 chr6 160991331 160991637 -21423605 - AluSx SINE Alu -9 303 6 418 266 58 37 chr6 160991637 160991792 -21423450 + MIR SINE MIR 85 246 -16 940 109 259 0 chr6 160992573 160992747 -21422495 - MSTA LTR MaLR -209 219 1 943 263 102 18 chr6 160992747 160993131 -21422111 - MLT1J1 LTR MaLR -28 418 3 2125 134 0 19 chr6 160993224 160993537 -21421705 + AluSx SINE Alu 1 307 -5 2221 120 0 0 chr6 160994052 160994360 -21420882 - AluY SINE Alu -3 308 1 24 32 0 0 chr6 160994443 160994474 -21420768 + AT_rich Low_complexity Low_complexity 1 31 0 1817 165 71 0 chr6 160995020 160995342 -21419900 - MER7A DNA MER2_type 0 346 4 2226 116 0 0 chr6 160995387 160995690 -21419552 + AluSx SINE Alu 1 303 -9 207 245 0 71 chr6 160995897 160995995 -21419247 + GA-rich Low_complexity Low_complexity 4 94 0 1623 107 0 13 chr6 160997597 160997821 -21417421 + AluSx SINE Alu 1 221 -91 2403 104 0 0 chr6 160997983 160998291 -21416951 + AluSx SINE Alu 1 308 -4 2770 26 0 3 chr6 160998778 160999088 -21416154 - AluYb8 SINE Alu -9 309 1 1566 186 0 34 chr6 160999314 160999610 -21415632 - AluJo SINE Alu -26 286 1 2240 127 7 0 chr6 161000882 161001190 -21414052 + AluSx SINE Alu 1 310 -2 447 282 136 19 chr6 161003026 161003239 -21412003 - MIR SINE MIR -6 256 19 933 240 0 15 chr6 161003316 161003516 -21411726 - MER20 DNA MER1_type -16 203 7 458 111 0 0 chr6 161003578 161003641 -21411601 - MSTB LTR MaLR 0 426 364 1984 146 3 10 chr6 161003853 161004161 -21411081 + AluJb SINE Alu 6 311 -1 188 0 74 0 chr6 161004480 161004507 -21410735 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2410 100 3 3 chr6 161004509 161004820 -21410422 - AluSx SINE Alu -1 311 1 339 280 38 100 chr6 161005026 161005265 -21409977 - Charlie8 DNA MER1_type -2152 265 42 2278 88 0 7 chr6 161006568 161006863 -21408379 + AluY SINE Alu 1 293 -18 250 297 63 38 chr6 161007041 161007224 -21408018 - MIR3 SINE MIR -1 207 20 1193 155 15 10 chr6 161007298 161007521 -21407721 - AluJo SINE Alu 0 307 84 211 333 0 0 chr6 161008322 161008397 -21406845 + L2 LINE L2 2988 3062 -251 185 371 121 0 chr6 161009040 161009156 -21406086 + L3 LINE CR1 1442 1571 -6 567 246 0 8 chr6 161009182 161009308 -21405934 + L2 LINE L2 3185 3309 -4 282 306 116 0 chr6 161009726 161009873 -21405369 - LTR33A LTR ERVL -329 194 31 2042 104 49 7 chr6 161012328 161012615 -21402627 - AluSx SINE Alu -13 299 1 21 0 0 0 chr6 161012695 161012716 -21402526 + AT_rich Low_complexity Low_complexity 1 21 0 502 68 0 0 chr6 161012992 161013065 -21402177 - Alu SINE Alu 0 310 238 183 80 0 0 chr6 161013180 161013205 -21402037 + (A)n Simple_repeat Simple_repeat 1 25 0 1278 195 3 102 chr6 161013924 161014116 -21401126 - AluSq SINE Alu -13 300 153 1959 149 0 27 chr6 161014116 161014411 -21400831 - AluSx SINE Alu -25 287 1 1278 195 3 102 chr6 161014411 161014551 -21400691 - AluSq SINE Alu -160 153 1 1982 133 3 7 chr6 161014865 161015159 -21400083 + AluSx SINE Alu 1 293 -19 2395 101 0 0 chr6 161015527 161015839 -21399403 - AluSg SINE Alu 0 312 1 32 0 0 0 chr6 161018971 161019003 -21396239 + AT_rich Low_complexity Low_complexity 1 32 0 279 241 157 36 chr6 161019050 161019324 -21395918 - L1ME4a LINE L1 -3 6118 5812 2560 77 0 0 chr6 161019415 161019725 -21395517 - AluSg SINE Alu 0 310 1 710 256 45 49 chr6 161020802 161021152 -21394090 - MLT1F1 LTR MaLR 0 560 209 355 248 97 62 chr6 161021324 161021469 -21393773 - MLT1J2 LTR MaLR -294 156 7 2347 112 0 3 chr6 161021621 161021934 -21393308 - AluSx SINE Alu 0 312 1 2037 181 17 3 chr6 161022085 161022445 -21392797 - MLT1A1 LTR MaLR 0 365 1 1460 171 6 69 chr6 161022612 161022962 -21392280 - L1 LINE L1 -889 5257 4930 * 2426 210 25 27 chr6 161022950 161023512 -21391730 + L1MA10 LINE L1 5760 6320 -14 590 241 32 0 chr6 161023538 161023696 -21391546 - L1MD3 LINE L1 -8 7987 7825 1068 178 84 75 chr6 161025303 161025387 -21389855 - MER33 DNA MER1_type -2261 324 242 1746 130 74 33 chr6 161025387 161025686 -21389556 + AluJo SINE Alu 2 312 0 2506 73 7 0 chr6 161025689 161025991 -21389251 + AluSq SINE Alu 1 304 -9 1068 178 84 75 chr6 161025991 161026159 -21389083 - MER33 DNA MER1_type -2344 241 62 1528 159 123 14 chr6 161026159 161026435 -21388807 - AluJb SINE Alu -6 306 1 1068 178 84 75 chr6 161026435 161026498 -21388744 - MER33 DNA MER1_type -2523 62 1 1719 136 1 19 chr6 161027334 161027666 -21387576 - MER1B DNA MER1_type -10 329 30 2233 108 7 0 chr6 161027694 161027991 -21387251 + AluSq SINE Alu 1 299 -14 1703 39 0 19 chr6 161029036 161029242 -21386000 - AluY SINE Alu -13 298 97 667 245 27 0 chr6 161029525 161029672 -21385570 - Tigger3(Golem) DNA MER2_type -1 3028 2878 288 215 0 92 chr6 161029673 161029693 -21385549 - Tigger3(Golem) DNA MER2_type -542 60 40 1582 123 119 15 chr6 161029693 161029961 -21385281 - AluSg SINE Alu -14 296 1 288 215 0 92 chr6 161029961 161030005 -21385237 - Tigger3(Golem) DNA MER2_type -562 40 2 189 346 0 25 chr6 161030230 161030311 -21384931 - MER5A DNA MER1_type -28 161 83 303 290 202 0 chr6 161030361 161030485 -21384757 - MER5A DNA MER1_type -1 188 40 426 279 22 0 chr6 161031573 161031709 -21383533 - MER5B DNA MER1_type -39 139 1 2487 79 3 0 chr6 161032054 161032359 -21382883 - AluSp SINE Alu -7 306 1 609 279 109 0 chr6 161033101 161033302 -21381940 - MER58A DNA MER1_type -1 223 1 495 235 29 7 chr6 161033316 161033452 -21381790 + MIR SINE MIR 112 250 -12 215 0 67 0 chr6 161033647 161033677 -21381565 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2260 92 18 0 chr6 161033679 161033962 -21381280 - AluSq SINE Alu -25 288 1 2268 128 0 0 chr6 161034579 161034891 -21380351 - AluSx SINE Alu 0 312 1 949 153 74 0 chr6 161034995 161035184 -21380058 + L1MA8 LINE L1 6083 6285 -6 21 36 0 0 chr6 161035215 161035243 -21379999 + AT_rich Low_complexity Low_complexity 1 28 0 1988 102 63 14 chr6 161035559 161035844 -21379398 + AluSg SINE Alu 1 299 -11 429 129 0 0 chr6 161036867 161036929 -21378313 - MSTA LTR MaLR 0 428 367 2425 83 0 7 chr6 161037052 161037354 -21377888 + AluSg SINE Alu 1 300 -10 2343 110 131 8 chr6 161037810 161038191 -21377051 - MSTA LTR MaLR 0 428 1 1963 130 10 23 chr6 161038219 161038527 -21376715 + AluSx SINE Alu 1 304 -8 214 312 117 49 chr6 161039286 161039594 -21375648 + L2 LINE L2 2430 2758 -556 396 264 9 18 chr6 161039899 161040009 -21375233 + L2 LINE L2 3164 3272 0 2186 92 3 26 chr6 161040153 161040485 -21374757 - AluSx SINE Alu 0 312 5 2448 73 7 3 chr6 161040518 161040819 -21374423 - AluSq SINE Alu -8 305 4 2302 68 7 0 chr6 161040854 161041196 -21374046 - AluSg SINE Alu 0 344 1 3634 131 75 3 chr6 161041197 161041814 -21373428 - Tigger1 DNA MER2_type -1757 661 1 965 104 0 15 chr6 161041847 161041982 -21373260 - FLAM_C SINE Alu 0 133 1 2058 129 0 0 chr6 161042055 161042350 -21372892 + AluSc SINE Alu 1 295 -14 195 172 266 0 chr6 161042504 161042568 -21372674 - MIR SINE MIR -111 151 71 356 252 30 46 chr6 161042611 161042699 -21372543 + MER5A DNA MER1_type 38 125 -64 2159 113 3 10 chr6 161042699 161042991 -21372251 - AluSx SINE Alu -22 290 1 356 252 30 46 chr6 161042991 161043033 -21372209 + MER5A DNA MER1_type 125 166 -23 2098 97 47 0 chr6 161043787 161044066 -21371176 - AluSg SINE Alu -16 294 3 1889 153 23 17 chr6 161044068 161044369 -21370873 - AluJo SINE Alu -9 303 1 1945 151 3 10 chr6 161046074 161046372 -21368870 - AluJb SINE Alu -16 296 1 465 192 85 85 chr6 161047206 161047262 -21367980 - MLT1J LTR MaLR -22 489 434 2338 116 0 0 chr6 161047262 161047572 -21367670 - AluSq SINE Alu -3 310 1 465 192 85 85 chr6 161047572 161047692 -21367550 - MLT1J LTR MaLR -76 435 313 1279 171 82 0 chr6 161047693 161047938 -21367304 - MER92B LTR ERV1 -371 265 1 686 259 89 49 chr6 161047938 161048181 -21367061 - MLT1J LTR MaLR -258 253 1 2241 91 17 3 chr6 161048312 161048608 -21366634 - AluSx SINE Alu -12 300 1 2103 132 3 0 chr6 161048645 161048949 -21366293 - AluSx SINE Alu -7 305 1 6075 157 23 4 chr6 161048987 161050399 -21364843 - L1MA6 LINE L1 -2 6298 4861 452 259 176 41 chr6 161050559 161050849 -21364393 + L2 LINE L2 2984 3312 -1 2290 109 0 0 chr6 161052058 161052351 -21362891 - AluSg SINE Alu -17 293 1 334 651 0 0 chr6 161053043 161053218 -21362024 + AluYb8 SINE Alu 134 308 0 484 276 163 20 chr6 161053268 161053464 -21361778 + MIR SINE MIR 21 244 -18 219 278 122 0 chr6 161053760 161053850 -21361392 + MIR SINE MIR 45 145 -63 2114 124 10 0 chr6 161054324 161054622 -21360620 + AluSx SINE Alu 1 301 -11 2020 157 23 3 chr6 161054687 161055037 -21360205 - L1MB4 LINE L1 0 6180 5824 1975 145 0 3 chr6 161055252 161055542 -21359700 + AluJb SINE Alu 6 294 -18 229 340 99 26 chr6 161056789 161057021 -21358221 - L2 LINE L2 -562 2752 2504 2205 130 0 3 chr6 161057079 161057387 -21357855 - AluSp SINE Alu -6 307 1 1827 159 7 7 chr6 161057398 161057693 -21357549 - AluJo SINE Alu -17 295 1 43 35 0 0 chr6 161058278 161058335 -21356907 + AT_rich Low_complexity Low_complexity 1 57 0 2024 101 42 14 chr6 161059426 161059714 -21355528 - AluSx SINE Alu -12 300 5 246 62 0 0 chr6 161059976 161060008 -21355234 + (TG)n Simple_repeat Simple_repeat 2 33 0 5223 92 55 13 chr6 161060127 161060754 -21354488 - L1PA10 LINE L1 -17 6151 5485 2433 84 7 0 chr6 161060754 161061052 -21354190 - AluSq SINE Alu -13 300 1 5223 92 55 13 chr6 161061052 161061189 -21354053 - L1PA10 LINE L1 -683 5485 5355 364 278 97 0 chr6 161061967 161062111 -21353131 + MIR SINE MIR 71 228 -34 1527 184 55 3 chr6 161062141 161062434 -21352808 + AluJo SINE Alu 2 309 -3 1907 113 0 4 chr6 161063511 161063768 -21351474 - AluSc SINE Alu 0 309 54 1684 102 57 8 chr6 161063768 161064011 -21351231 - AluSc SINE Alu -52 257 1 2177 102 19 29 chr6 161064601 161064916 -21350326 - AluSx SINE Alu 0 312 1 2308 104 0 10 chr6 161065439 161065746 -21349496 - AluSq SINE Alu -7 306 3 2311 115 0 3 chr6 161066524 161066836 -21348406 - AluSq SINE Alu -2 311 1 199 285 41 65 chr6 161067291 161067414 -21347828 + L2 LINE L2 3161 3280 -33 2259 121 0 3 chr6 161067628 161067926 -21347316 + AluSx SINE Alu 1 297 -15 953 208 125 7 chr6 161068086 161068374 -21346868 - MER5C DNA MER1_type 0 324 3 2220 124 3 13 chr6 161071717 161072032 -21343210 + AluSx SINE Alu 1 312 0 360 266 179 66 chr6 161072173 161072447 -21342795 + L2 LINE L2 3009 3313 0 189 351 0 0 chr6 161072442 161072516 -21342726 + MIR SINE MIR 137 210 -52 * 213 301 41 0 chr6 161072671 161072744 -21342498 + L2 LINE L2 3156 3231 -41 649 200 140 0 chr6 161072881 161073031 -21342211 - MER5B DNA MER1_type 0 178 8 180 270 95 0 chr6 161073309 161073372 -21341870 - MIR SINE MIR -11 251 183 2166 100 0 14 chr6 161073552 161073833 -21341409 + AluSx SINE Alu 5 281 -31 288 77 0 0 chr6 161073833 161073872 -21341370 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 762 110 0 0 chr6 161073955 161074064 -21341178 - AluSg/x SINE Alu -4 308 200 670 268 54 44 chr6 161074489 161074694 -21340548 + MER63A DNA MER1_type 4 210 0 1704 143 4 0 chr6 161074791 161075042 -21340200 + AluJo SINE Alu 37 288 -24 496 235 115 37 chr6 161075112 161075646 -21339596 - L1MC/D LINE L1 -748 5398 4927 2170 130 0 0 chr6 161075669 161075969 -21339273 + AluSx SINE Alu 1 300 -12 677 283 125 44 chr6 161076065 161076838 -21338404 - L1MC/D LINE L1 -1437 4709 3872 2090 112 31 0 chr6 161076949 161077243 -21337999 - AluSg SINE Alu -2 308 6 51 31 0 0 chr6 161077248 161077313 -21337929 + AT_rich Low_complexity Low_complexity 1 65 0 274 284 123 43 chr6 161080440 161080552 -21334690 + L2 LINE L2 2836 2938 -375 2126 137 0 0 chr6 161080552 161080845 -21334397 - AluSx SINE Alu -19 293 1 274 284 123 43 chr6 161080845 161081123 -21334119 + L2 LINE L2 2938 3257 -56 429 281 30 24 chr6 161081426 161081593 -21333649 + MIR3 SINE MIR 19 186 -22 2320 113 0 0 chr6 161081762 161082063 -21333179 - AluSx SINE Alu -11 301 1 2245 105 10 0 chr6 161082102 161082398 -21332844 + AluY SINE Alu 1 299 -12 2113 103 68 7 chr6 161082539 161082831 -21332411 - AluSg SINE Alu 0 310 1 3125 95 48 56 chr6 161082914 161083282 -21331960 + MER75 DNA T2_type 3 372 -142 2407 93 0 3 chr6 161083282 161083592 -21331650 - AluSx SINE Alu -3 309 1 3125 95 48 56 chr6 161083592 161083640 -21331602 + MER75 DNA T2_type 372 419 -95 2229 92 3 3 chr6 161083640 161083948 -21331294 + AluSx SINE Alu 1 308 0 3125 95 48 56 chr6 161083948 161084043 -21331199 + MER75 DNA T2_type 419 514 0 2498 73 0 22 chr6 161084179 161084495 -21330747 - AluY SINE Alu -2 309 1 1747 146 36 78 chr6 161084496 161084553 -21330689 + Charlie1 DNA MER1_type 2160 2218 -543 1892 128 85 0 chr6 161084553 161084835 -21330407 + AluSx SINE Alu 1 306 -6 1747 146 36 78 chr6 161084835 161085162 -21330080 + Charlie1 DNA MER1_type 2218 2528 -233 310 148 16 33 chr6 161085145 161085206 -21330036 + Charlie1 DNA MER1_type 2702 2761 0 * 600 258 78 105 chr6 161085223 161085777 -21329465 + HAL1 LINE L1 761 1299 -1208 2117 135 7 3 chr6 161085784 161086087 -21329155 - AluSx SINE Alu -8 304 1 1807 208 83 28 chr6 161086092 161086587 -21328655 - Charlie1b DNA MER1_type 0 523 2 1530 273 149 28 chr6 161086617 161087351 -21327891 + HAL1 LINE L1 1359 2253 -254 458 152 205 18 chr6 161087351 161087463 -21327779 + FLAM_C SINE Alu 1 133 0 1530 273 149 28 chr6 161087463 161087752 -21327490 + HAL1 LINE L1 2253 2506 -1 324 300 15 5 chr6 161087769 161087945 -21327297 + L1ME LINE L1 5545 5824 -297 200 240 39 140 chr6 161088011 161088119 -21327123 + L2 LINE L2 3118 3203 -110 1720 130 116 17 chr6 161088119 161088420 -21326822 + MER1B DNA MER1_type 3 333 -4 200 240 39 140 chr6 161088420 161088490 -21326752 + L2 LINE L2 3203 3278 -35 2366 88 7 10 chr6 161089165 161089472 -21325770 + AluSx SINE Alu 1 306 -6 276 100 0 0 chr6 161091279 161091319 -21323923 + (CA)n Simple_repeat Simple_repeat 1 40 0 447 282 133 58 chr6 161092271 161092440 -21322802 - MER102b DNA MER1_type -1106 322 128 2237 102 0 20 chr6 161092440 161092744 -21322498 - AluSp SINE Alu -15 298 1 447 282 133 58 chr6 161092744 161092815 -21322427 - MER102b DNA MER1_type -1300 128 64 1026 271 80 9 chr6 161092841 161093157 -21322085 + L1MC5 LINE L1 5494 5835 -1973 2243 102 3 10 chr6 161093157 161093461 -21321781 + AluSx SINE Alu 1 302 -10 978 142 112 6 chr6 161093509 161093678 -21321564 + MER5A DNA MER1_type 3 189 0 2115 131 0 26 chr6 161093797 161094110 -21321132 + AluSx SINE Alu 1 305 -7 1617 117 0 5 chr6 161094576 161094798 -21320444 + AluSc SINE Alu 83 303 -6 2122 130 3 3 chr6 161094809 161095117 -21320125 + AluSx SINE Alu 1 308 -4 2855 219 91 81 chr6 161095126 161095538 -21319704 + L1MC5 LINE L1 6625 7031 -930 1617 199 14 3 chr6 161095538 161095835 -21319407 + AluJb SINE Alu 1 300 -12 2855 219 91 81 chr6 161095835 161096217 -21319025 + L1MC5 LINE L1 7031 7407 -554 2250 123 0 0 chr6 161096217 161096517 -21318725 + AluSx SINE Alu 1 300 -12 2855 219 91 81 chr6 161096517 161096803 -21318439 + L1MC5 LINE L1 7407 7725 -236 2194 120 0 3 chr6 161096803 161097095 -21318147 + AluSx SINE Alu 3 293 -19 2855 219 91 81 chr6 161097095 161097304 -21317938 + L1MC5 LINE L1 7725 7930 -31 1987 139 0 23 chr6 161097524 161097826 -21317416 + AluSx SINE Alu 1 295 -17 1282 91 0 0 chr6 161097992 161098157 -21317085 + AluSp SINE Alu 136 300 -13 222 343 0 0 chr6 161098965 161099032 -21316210 - L2 LINE L2 -5 3267 3201 380 303 0 53 chr6 161099160 161099292 -21315950 - MIR SINE MIR -59 149 25 924 137 14 0 chr6 161099399 161099562 -21315680 - AluSg/x SINE Alu 0 309 145 984 135 0 14 chr6 161099812 161099953 -21315289 + FRAM SINE Alu 8 146 -30 2257 131 0 0 chr6 161099970 161100282 -21314960 + AluSx SINE Alu 1 312 0 2125 125 0 0 chr6 161101168 161101456 -21313786 - AluSx SINE Alu -22 290 3 322 312 24 16 chr6 161102775 161102900 -21312342 + MER91A DNA MER1_type 21 146 -50 2128 138 0 6 chr6 161103845 161104157 -21311085 - AluJb SINE Alu -2 310 1 258 190 35 0 chr6 161104272 161104330 -21310912 + MIR SINE MIR 1 60 -202 22 0 0 0 chr6 161104661 161104683 -21310559 + AT_rich Low_complexity Low_complexity 1 22 0 2473 71 0 3 chr6 161105082 161105377 -21309865 - AluSc SINE Alu -15 294 1 189 0 0 0 chr6 161106573 161106594 -21308648 + (TA)n Simple_repeat Simple_repeat 1 21 0 2322 110 7 0 chr6 161106594 161106902 -21308340 - AluSx SINE Alu -2 310 1 2351 88 3 0 chr6 161107356 161107652 -21307590 - AluSp SINE Alu -16 297 1 2139 124 3 0 chr6 161107944 161108243 -21306999 - AluSq SINE Alu -12 301 2 216 0 0 0 chr6 161108641 161108665 -21306577 + (T)n Simple_repeat Simple_repeat 1 24 0 3150 148 20 41 chr6 161108737 161108820 -21306422 + MER44D DNA MER2_type 1 84 -2403 2028 94 83 4 chr6 161108820 161109096 -21306146 + AluSx SINE Alu 1 298 -14 762 183 79 12 chr6 161109099 161109263 -21305979 + FAM SINE Alu 1 175 0 3150 148 20 41 chr6 161109263 161109737 -21305505 + MER44D DNA MER2_type 86 605 0 1686 101 50 47 chr6 161110041 161110109 -21305133 + L1MA3 LINE L1 6007 6073 -232 2205 117 17 0 chr6 161110109 161110408 -21304834 + AluSx SINE Alu 1 304 -8 1686 101 50 47 chr6 161110408 161110637 -21304605 + L1MA3 LINE L1 6073 6305 0 2053 132 3 10 chr6 161110885 161111195 -21304047 + AluSx SINE Alu 1 308 -4 654 148 28 63 chr6 161112181 161112323 -21302919 + AluSg/x SINE Alu 174 310 0 1675 144 0 18 chr6 161112442 161112719 -21302523 + AluJb SINE Alu 12 283 -29 758 101 155 81 chr6 161112719 161112867 -21302375 - AluSg/x SINE Alu -44 266 108 646 78 20 10 chr6 161112882 161112984 -21302258 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 2128 130 0 3 chr6 161113055 161113354 -21301888 + AluSx SINE Alu 1 298 -14 1849 171 0 7 chr6 161113691 161113989 -21301253 - AluJb SINE Alu -16 296 1 2583 53 0 0 chr6 161115441 161115742 -21299500 + AluY SINE Alu 1 301 -10 182 221 144 29 chr6 161116211 161116315 -21298927 - L2 LINE L2 -2540 774 659 498 255 99 16 chr6 161116903 161117095 -21298147 - MIR SINE MIR -41 221 14 1881 126 3 48 chr6 161117125 161117439 -21297803 - AluSx SINE Alu 0 301 1 3180 85 21 36 chr6 161118297 161118745 -21296497 - Charlie3 DNA MER1_type 0 2706 2264 2169 98 51 3 chr6 161118745 161119041 -21296201 - AluSg SINE Alu 0 310 1 3180 85 21 36 chr6 161119041 161119064 -21296178 - Charlie3 DNA MER1_type -442 2264 2242 * 3726 94 25 2 chr6 161119058 161119547 -21295695 - Charlie3 DNA MER1_type -2210 500 1 267 218 32 105 chr6 161119891 161119972 -21295270 - MER5A DNA MER1_type -39 150 79 2457 68 0 19 chr6 161119972 161120279 -21294963 - AluSg SINE Alu -9 301 1 267 218 32 105 chr6 161120279 161120321 -21294921 - MER5A DNA MER1_type -110 79 36 244 128 0 0 chr6 161121550 161121589 -21293653 + Alu SINE Alu 134 172 -130 2234 101 0 3 chr6 161121700 161122009 -21293233 + AluSx SINE Alu 1 308 0 2143 92 4 0 chr6 161122367 161122638 -21292604 + AluSx SINE Alu 23 294 -18 2178 123 0 0 chr6 161123000 161123293 -21291949 + AluSq SINE Alu 1 293 -20 2162 121 0 10 chr6 161123819 161124133 -21291109 + AluSx SINE Alu 1 311 -1 2560 77 3 0 chr6 161124246 161124558 -21290684 - AluSp SINE Alu 0 313 1 258 32 0 0 chr6 161124568 161124599 -21290643 + (A)n Simple_repeat Simple_repeat 1 31 0 529 275 108 30 chr6 161124729 161125024 -21290218 + L1ME LINE L1 5505 5822 -299 2259 125 0 0 chr6 161125115 161125427 -21289815 + AluSx SINE Alu 1 312 0 2072 123 0 26 chr6 161126939 161127247 -21287995 - AluSx SINE Alu -12 300 1 1685 164 31 17 chr6 161127711 161127998 -21287244 + AluJb SINE Alu 1 291 -21 361 273 182 55 chr6 161128093 161128313 -21286929 + MIR SINE MIR 14 261 -1 2096 98 0 11 chr6 161128314 161128591 -21286651 + AluSq SINE Alu 1 274 -39 2070 136 3 3 chr6 161128593 161128887 -21286355 + AluSx SINE Alu 1 294 -18 316 109 0 0 chr6 161128989 161129035 -21286207 + MADE1 DNA Mariner 1 46 -34 1664 152 69 17 chr6 161129066 161129356 -21285886 - AluJo SINE Alu -7 305 1 409 138 17 43 chr6 161129362 161129478 -21285764 + CT-rich Low_complexity Low_complexity 2 114 0 889 120 0 16 chr6 161129485 161129610 -21285632 - AluJb SINE Alu -187 125 3 2469 73 7 0 chr6 161129691 161129993 -21285249 - AluSp SINE Alu -9 304 1 1952 119 0 47 chr6 161131749 161132067 -21283175 + AluSx SINE Alu 1 303 -9 383 335 98 23 chr6 161132484 161132699 -21282543 + MIR SINE MIR 5 235 -27 832 182 0 0 chr6 161132759 161132891 -21282351 + FLAM_A SINE Alu 1 132 -1 1853 128 21 3 chr6 161135099 161135389 -21279853 - AluJb SINE Alu -12 300 6 1911 133 0 32 chr6 161135461 161135770 -21279472 - AluJb SINE Alu -13 299 1 2152 112 0 10 chr6 161138514 161138826 -21276416 + AluSx SINE Alu 3 311 -1 1822 170 0 19 chr6 161138952 161139264 -21275978 + AluJo SINE Alu 1 306 -6 2052 137 0 0 chr6 161139297 161139603 -21275639 + AluSx SINE Alu 1 306 -6 1297 146 31 18 chr6 161140716 161140942 -21274300 - MER30 DNA MER1_type -1 229 1 2127 123 0 3 chr6 161141525 161141833 -21273409 - AluSx SINE Alu -5 307 1 2027 107 27 0 chr6 161145131 161145429 -21269813 - AluSg SINE Alu -4 306 1 1775 133 68 0 chr6 161146406 161146684 -21268558 + AluSx SINE Alu 1 297 -15 2208 95 3 7 chr6 161147304 161147609 -21267633 - AluSx SINE Alu -8 304 1 625 190 69 0 chr6 161147616 161147732 -21267510 - AluJb SINE Alu -183 129 6 2261 88 3 0 chr6 161147962 161148259 -21266983 + AluSq SINE Alu 1 298 -15 2006 107 7 0 chr6 161149318 161149622 -21265620 - AluJb SINE Alu 0 306 1 252 0 0 0 chr6 161149678 161149706 -21265536 + (A)n Simple_repeat Simple_repeat 1 28 0 194 290 0 97 chr6 161150285 161150378 -21264864 + L2 LINE L2 2599 2682 -632 2003 125 3 0 chr6 161150393 161150688 -21264554 + AluSx SINE Alu 1 296 -16 1878 227 94 25 chr6 161150820 161151300 -21263942 - LTR40a LTR ERVL 0 519 7 342 300 55 20 chr6 161151343 161151543 -21263699 + L1ME LINE L1 5487 5693 -428 4474 49 68 139 chr6 161151544 161152285 -21262957 + LTR12 LTR ERV1 1 688 0 5622 102 53 0 chr6 161152285 161153070 -21262172 + HERV9 LTR ERV1 1 827 -7572 * 41293 72 5 6 chr6 161153068 161158320 -21256922 + HERV9 LTR ERV1 3149 8399 0 4942 65 1 130 chr6 161158320 161159110 -21256132 + LTR12 LTR ERV1 1 688 0 2292 189 58 77 chr6 161159387 161160011 -21255231 - LTR10E LTR ERV1 -21 612 1 1447 259 72 12 chr6 161160047 161160464 -21254778 + LTR47B LTR ERVL 2 443 0 376 334 40 107 chr6 161160642 161160773 -21254469 + L2 LINE L2 210 348 -2966 2161 88 17 0 chr6 161160773 161161067 -21254175 - AluSc SINE Alu -10 299 1 376 334 40 107 chr6 161161067 161161282 -21253960 + L2 LINE L2 348 500 -2814 2108 117 0 0 chr6 161161282 161161582 -21253660 - AluSq SINE Alu -13 300 1 376 334 40 107 chr6 161161582 161161851 -21253391 + L2 LINE L2 500 785 -2529 541 70 58 23 chr6 161161944 161162030 -21253212 - L1MB3 LINE L1 -3 6180 6092 12644 119 3 4 chr6 161162037 161163883 -21251359 + HERVK LTR ERVK 5533 7242 -1 3606 186 45 49 chr6 161163883 161164856 -21250386 + LTR5 LTR ERVK 1 969 0 795 80 0 0 chr6 161164856 161164956 -21250286 - AluS SINE Alu -212 101 2 741 302 163 36 chr6 161164957 161165609 -21249633 + L2 LINE L2 2032 2811 -503 1839 128 17 10 chr6 161165609 161165905 -21249337 + AluSx SINE Alu 1 298 -14 741 302 163 36 chr6 161165905 161166073 -21249169 + L2 LINE L2 2811 2956 -358 747 108 0 0 chr6 161166205 161166307 -21248935 - AluJb SINE Alu -5 307 206 850 175 0 75 chr6 161166690 161166750 -21248492 - MER2 DNA MER2_type -135 210 147 1834 162 154 74 chr6 161166750 161167082 -21248160 + MER6A DNA MER2_type 1 398 -467 1986 118 0 4 chr6 161167082 161167362 -21247880 - AluSx SINE Alu -21 291 13 1834 162 154 74 chr6 161167362 161167586 -21247656 + MER6A DNA MER2_type 398 602 -3 850 175 0 75 chr6 161167586 161167725 -21247517 - MER2 DNA MER2_type -198 147 26 225 303 0 26 chr6 161167761 161167837 -21247405 - MIR SINE MIR -109 153 80 234 0 0 0 chr6 161168139 161168165 -21247077 + (CCG)n Simple_repeat Simple_repeat 2 27 0 24 53 0 0 chr6 161168275 161168313 -21246929 + GC_rich Low_complexity Low_complexity 1 38 0 213 94 0 0 chr6 161168334 161168366 -21246876 + (CGG)n Simple_repeat Simple_repeat 3 34 0 241 231 8 68 chr6 161169414 161169531 -21245711 + CT-rich Low_complexity Low_complexity 3 112 0 1214 202 25 7 chr6 161169597 161169879 -21245363 - AluJb SINE Alu 0 312 26 363 326 109 11 chr6 161169984 161170168 -21245074 + L2 LINE L2 3109 3310 -3 2307 82 0 7 chr6 161170209 161170515 -21244727 - AluSx SINE Alu -6 306 3 427 273 28 35 chr6 161170613 161170756 -21244486 + MIR SINE MIR 119 260 -2 2302 74 3 0 chr6 161170757 161171053 -21244189 - AluSg SINE Alu -12 298 2 556 165 16 16 chr6 161171076 161171197 -21244045 - MER58 DNA MER1_type 0 2420 2300 1643 147 21 14 chr6 161171198 161171477 -21243765 + AluJb SINE Alu 1 281 -31 555 82 61 0 chr6 161171481 161171579 -21243663 + Tigger1 DNA MER2_type 2211 2314 -104 2849 58 8 3 chr6 161171579 161171944 -21243298 - L1PA8 LINE L1 -1 6171 5805 899 141 0 0 chr6 161171945 161172073 -21243169 - FLAM_C SINE Alu -4 129 2 1456 91 0 0 chr6 161172300 161172487 -21242755 - AluSx SINE Alu -125 187 1 1090 153 11 0 chr6 161172869 161173045 -21242197 - Tigger1 DNA MER2_type 0 2418 2241 1921 111 0 30 chr6 161173048 161173365 -21241877 + AluSg SINE Alu 1 310 0 268 134 45 50 chr6 161173366 161173545 -21241697 + (TA)n Simple_repeat Simple_repeat 2 179 0 1498 133 111 92 chr6 161173581 161173913 -21241329 - Tigger1 DNA MER2_type -159 2259 1918 2235 89 0 7 chr6 161173913 161174216 -21241026 - AluSg SINE Alu -6 304 4 1498 133 111 92 chr6 161174216 161174251 -21240991 - Tigger1 DNA MER2_type -500 1918 1885 2172 68 7 0 chr6 161174251 161174593 -21240649 - AluSg SINE Alu 0 344 1 3617 131 75 3 chr6 161174594 161175211 -21240031 - Tigger1 DNA MER2_type -1757 661 1 971 104 0 15 chr6 161175244 161175379 -21239863 - FLAM_C SINE Alu 0 133 1 2141 102 0 0 chr6 161175452 161175747 -21239495 + AluSc SINE Alu 1 295 -14 225 188 266 0 chr6 161175901 161175965 -21239277 - MIR SINE MIR -111 151 71 297 288 38 69 chr6 161176003 161176096 -21239146 - MER5A DNA MER1_type -21 168 81 2029 113 3 10 chr6 161176096 161176388 -21238854 - AluSx SINE Alu -22 290 1 297 288 38 69 chr6 161176388 161176454 -21238788 - MER5A DNA MER1_type -108 81 14 1965 100 47 0 chr6 161177184 161177463 -21237779 - AluSg SINE Alu -16 294 3 1770 153 23 17 chr6 161177465 161177766 -21237476 - AluJo SINE Alu -9 303 1 1827 161 3 0 chr6 161179471 161179769 -21235473 - AluJb SINE Alu -13 299 1 495 186 85 85 chr6 161180603 161180659 -21234583 - MLT1J LTR MaLR -22 489 434 2338 116 0 0 chr6 161180659 161180969 -21234273 - AluSq SINE Alu -3 310 1 495 186 85 85 chr6 161180969 161181089 -21234153 - MLT1J LTR MaLR -76 435 313 1279 171 82 0 chr6 161181090 161181335 -21233907 - MER92B LTR ERV1 -371 265 1 686 259 89 49 chr6 161181335 161181578 -21233664 - MLT1J LTR MaLR -258 253 1 2241 91 17 3 chr6 161181709 161182005 -21233237 - AluSx SINE Alu -12 300 1 2103 132 3 0 chr6 161182042 161182346 -21232896 - AluSx SINE Alu -7 305 1 6075 157 23 4 chr6 161182384 161183796 -21231446 - L1MA6 LINE L1 -2 6298 4861 452 259 176 41 chr6 161183956 161184246 -21230996 + L2 LINE L2 2984 3312 -1 2290 109 0 0 chr6 161185455 161185748 -21229494 - AluSg SINE Alu -17 293 1 843 136 0 0 chr6 161186441 161186559 -21228683 + AluJo/FLAM SINE Alu 1 118 -184 2555 60 3 0 chr6 161186559 161186857 -21228385 - AluY SINE Alu -12 299 1 23 54 0 0 chr6 161186866 161186903 -21228339 + AT_rich Low_complexity Low_complexity 1 37 0 2277 105 3 0 chr6 161187617 161187913 -21227329 - AluSx SINE Alu -15 297 1 27 0 0 0 chr6 161188233 161188260 -21226982 + AT_rich Low_complexity Low_complexity 1 27 0 1939 163 0 10 chr6 161188568 161188881 -21226361 + AluJo SINE Alu 1 310 -2 1790 156 16 32 chr6 161189125 161189439 -21225803 + AluJo SINE Alu 1 309 -3 2090 132 7 3 chr6 161189878 161190174 -21225068 - AluSx SINE Alu -15 297 1 408 275 194 51 chr6 161190507 161190940 -21224302 + L1ME LINE L1 3455 3949 -2197 838 260 100 52 chr6 161190962 161191310 -21223932 + L1ME LINE L1 4471 4801 -1345 2340 78 0 7 chr6 161191310 161191604 -21223638 + AluSx SINE Alu 1 292 -20 838 260 100 52 chr6 161191604 161192030 -21223212 + L1ME LINE L1 4801 5328 -818 340 256 166 20 chr6 161192110 161192292 -21222950 + L1ME LINE L1 5453 5663 -507 2274 116 3 0 chr6 161192292 161192593 -21222649 + AluSp SINE Alu 1 302 -11 340 256 166 20 chr6 161192593 161192605 -21222637 + L1ME LINE L1 5663 5672 -498 1462 94 62 5 chr6 161192722 161192946 -21222296 - MER50-int LTR ERV1 -87 7118 6882 274 56 28 0 chr6 161192943 161192979 -21222263 - MER50-int LTR ERV1 -7165 40 4 * 1316 146 0 59 chr6 161192981 161193234 -21222008 - MER50 LTR ERV1 0 734 497 2411 94 0 0 chr6 161193394 161193701 -21221541 - AluSx SINE Alu -3 309 3 202 139 69 0 chr6 161193804 161193876 -21221366 + (TA)n Simple_repeat Simple_repeat 1 77 0 214 105 35 35 chr6 161193941 161193998 -21221244 + (TTATA)n Simple_repeat Simple_repeat 3 59 0 2074 139 0 0 chr6 161195487 161195782 -21219460 - AluSx SINE Alu -17 295 1 229 267 53 0 chr6 161196290 161196365 -21218877 + MIR SINE MIR 111 189 -73 1612 136 36 4 chr6 161196379 161196630 -21218612 + AluJb SINE Alu 1 259 -53 396 286 71 41 chr6 161198323 161198519 -21216723 - MIR SINE MIR 0 262 61 2209 75 3 34 chr6 161199247 161199541 -21215701 + AluY SINE Alu 4 288 -23 2339 90 3 0 chr6 161200272 161200561 -21214681 - AluSp SINE Alu -23 290 1 678 128 0 0 chr6 161201245 161201368 -21213874 - AluSc SINE Alu 0 308 186 2292 97 3 0 chr6 161202109 161202397 -21212845 + AluSg SINE Alu 1 289 -21 206 85 68 0 chr6 161202400 161202459 -21212783 + (TA)n Simple_repeat Simple_repeat 1 63 0 180 333 14 0 chr6 161203015 161203084 -21212158 + L2 LINE L2 2640 2709 -605 2596 58 3 0 chr6 161203151 161203459 -21211783 + AluY SINE Alu 1 309 -2 246 283 33 22 chr6 161203515 161203607 -21211635 - Charlie7 DNA MER1_type -1021 1591 1499 1782 147 7 37 chr6 161203609 161203909 -21211333 + AluJb SINE Alu 6 296 -16 254 196 0 0 chr6 161203948 161203994 -21211248 - Charlie7 DNA MER1_type -2258 354 309 923 81 0 8 chr6 161205623 161205746 -21209496 - AluSg/x SINE Alu 0 309 188 1815 154 0 49 chr6 161205825 161206150 -21209092 - AluJo SINE Alu -3 309 1 183 213 64 0 chr6 161206884 161206931 -21208311 + MIR SINE MIR 117 166 -96 2195 112 20 0 chr6 161207446 161207749 -21207493 - AluSg SINE Alu -1 309 1 466 155 0 24 chr6 161209815 161209899 -21205343 - Tigger5 DNA MER2_type 0 2323 2242 * 1303 240 37 10 chr6 161209887 161210183 -21205059 - Tigger5 DNA MER2_type -2019 304 1 203 339 0 0 chr6 161210249 161210314 -21204928 + L2 LINE L2 3188 3252 -20 1915 142 0 35 chr6 161210315 161210625 -21204617 - AluSx SINE Alu -13 299 1 2145 105 13 32 chr6 161210758 161211071 -21204171 + AluSq SINE Alu 1 307 -6 1065 193 184 8 chr6 161211717 161211961 -21203281 - AluJo SINE Alu -15 287 1 2311 99 0 13 chr6 161212314 161212617 -21202625 + AluSq SINE Alu 1 299 -14 2380 68 31 0 chr6 161212699 161212993 -21202249 + AluSp SINE Alu 1 303 -10 180 253 222 80 chr6 161213008 161213170 -21202072 + MIR SINE MIR 71 255 -7 21 0 0 0 chr6 161213696 161213717 -21201525 + AT_rich Low_complexity Low_complexity 1 21 0 2779 113 9 39 chr6 161213842 161214073 -21201169 - MSTA LTR MaLR 0 428 215 2592 85 8 3 chr6 161214073 161214425 -21200817 - THE1A LTR MaLR -1 354 1 2779 113 9 39 chr6 161214425 161214634 -21200608 - MSTA LTR MaLR -213 215 1 1835 146 32 32 chr6 161215418 161215585 -21199657 - AluJb SINE Alu -3 309 140 2369 57 0 17 chr6 161215585 161215882 -21199360 - AluY SINE Alu -19 292 1 1835 146 32 32 chr6 161215882 161216023 -21199219 - AluJb SINE Alu -171 141 1 1774 168 0 24 chr6 161216129 161216268 -21198974 + AluJb SINE Alu 1 142 -170 2085 118 10 7 chr6 161216268 161216565 -21198677 + AluSx SINE Alu 3 300 -12 1774 168 0 24 chr6 161216565 161216722 -21198520 + AluJb SINE Alu 142 290 -22 1428 182 4 4 chr6 161216834 161217070 -21198172 + AluJb SINE Alu 42 277 -35 1419 110 40 31 chr6 161217565 161217793 -21197449 - MER30 DNA MER1_type 0 230 1 2118 120 3 22 chr6 161218003 161218319 -21196923 - AluSx SINE Alu 0 312 3 2128 89 6 83 chr6 161218710 161219046 -21196196 - AluSq SINE Alu -3 310 1 2469 80 6 0 chr6 161219167 161219478 -21195764 - AluSp SINE Alu 0 313 1 1689 113 128 0 chr6 161219659 161219925 -21195317 + AluSx SINE Alu 1 300 -2 2293 107 10 0 chr6 161220482 161220780 -21194462 - AluSx SINE Alu -11 301 1 207 342 13 0 chr6 161221208 161221287 -21193955 - MIR SINE MIR -63 145 66 575 177 24 40 chr6 161221304 161221427 -21193815 - MLT1F1 LTR MaLR 0 567 447 249 94 0 0 chr6 161221427 161221459 -21193783 - MSTA LTR MaLR 0 426 395 820 143 53 0 chr6 161221459 161221592 -21193650 + AluSg/x SINE Alu 160 299 -11 2174 159 28 30 chr6 161221592 161221642 -21193600 - MSTA LTR MaLR -34 394 345 2231 117 0 3 chr6 161221642 161221942 -21193300 - AluSx SINE Alu -13 299 1 2174 159 28 30 chr6 161221942 161222286 -21192956 - MSTA LTR MaLR -83 345 1 1929 246 37 2 chr6 161222290 161222721 -21192521 - MLT1F1 LTR MaLR -120 447 2 33 43 0 0 chr6 161222936 161222983 -21192259 + AT_rich Low_complexity Low_complexity 1 47 0 1280 155 0 143 chr6 161223180 161223537 -21191705 - AluJo SINE Alu 0 310 1 2353 75 17 3 chr6 161223539 161223833 -21191409 - AluSp SINE Alu -15 298 1 1139 81 0 0 chr6 161223833 161223969 -21191273 - AluSq/x SINE Alu -177 136 1 856 155 77 26 chr6 161223979 161224134 -21191108 - FRAM SINE Alu -21 155 1 30 0 0 0 chr6 161224989 161225019 -21190223 + AT_rich Low_complexity Low_complexity 1 30 0 2383 84 3 3 chr6 161225065 161225361 -21189881 - AluSx SINE Alu -16 296 1 228 122 24 0 chr6 161225361 161225402 -21189840 + HsTC2 DNA Tc2 1815 1856 -42 281 93 19 0 chr6 161225927 161225981 -21189261 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 613 116 0 0 chr6 161225998 161226084 -21189158 - AluS SINE Alu -224 88 3 633 170 0 0 chr6 161226637 161226743 -21188499 - AluSx SINE Alu -11 301 196 1057 111 7 0 chr6 161226745 161226889 -21188353 - AluSx SINE Alu -168 145 1 2026 128 10 7 chr6 161226891 161227195 -21188047 - AluSx SINE Alu -7 305 1 387 231 50 8 chr6 161229570 161229691 -21185551 - L1ME4a LINE L1 0 6121 5996 2440 92 0 0 chr6 161229870 161230174 -21185068 - AluSx SINE Alu -8 304 1 506 279 32 6 chr6 161230366 161230524 -21184718 - L1ME4a LINE L1 -2019 5789 5628 2530 62 7 3 chr6 161230571 161230875 -21184367 + AluY SINE Alu 1 305 -6 1865 141 38 10 chr6 161230970 161231261 -21183981 - AluSx SINE Alu -13 299 1 598 227 31 0 chr6 161232541 161232669 -21182573 + FLAM_A SINE Alu 1 132 -1 299 202 40 10 chr6 161232975 161233074 -21182168 - L1ME4a LINE L1 -174 5947 5846 31 68 0 0 chr6 161233099 161233158 -21182084 + AT_rich Low_complexity Low_complexity 1 59 0 207 0 0 0 chr6 161233686 161233709 -21181533 + (T)n Simple_repeat Simple_repeat 1 23 0 2375 105 0 0 chr6 161234297 161234603 -21180639 + AluSx SINE Alu 1 306 -6 2311 91 13 13 chr6 161234907 161235215 -21180027 + AluSq SINE Alu 1 308 -5 315 122 0 0 chr6 161235215 161235264 -21179978 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 249 33 0 0 chr6 161235285 161235315 -21179927 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 257 279 93 90 chr6 161236038 161236203 -21179039 + L2 LINE L2 1892 2055 -1259 837 183 0 0 chr6 161236203 161236334 -21178908 - FLAM_C SINE Alu -2 131 1 257 279 93 90 chr6 161236334 161236512 -21178730 + L2 LINE L2 2055 2236 -1078 527 213 39 0 chr6 161236531 161236658 -21178584 + MIR SINE MIR 37 168 -94 624 295 35 79 chr6 161236696 161237011 -21178231 + L2 LINE L2 2970 3270 -2 536 287 164 4 chr6 161238507 161238782 -21176460 + L3 LINE CR1 1249 1567 -10 260 305 54 49 chr6 161240040 161240243 -21174999 + MIR SINE MIR 4 207 -55 2340 109 3 0 chr6 161240423 161240735 -21174507 - AluSq SINE Alu 0 313 1 907 279 52 15 chr6 161241238 161241564 -21173678 + MER46C DNA MER2_type 1 338 0 681 158 0 0 chr6 161241639 161241740 -21173502 + U6 snRNA snRNA 1 101 -6 2117 126 7 3 chr6 161242101 161242402 -21172840 - AluSq SINE Alu -11 302 1 239 220 0 51 chr6 161242602 161242661 -21172581 + L2 LINE L2 3248 3303 -10 2194 106 3 0 chr6 161242990 161243297 -21171945 - AluSx SINE Alu 0 308 1 860 288 59 20 chr6 161243524 161244108 -21171134 - L2 LINE L2 -274 3039 2432 185 200 60 0 chr6 161244212 161244262 -21170980 - L2 LINE L2 -976 2338 2286 305 254 79 87 chr6 161244316 161244394 -21170848 + L1ME LINE L1 5359 5436 -685 2368 100 0 0 chr6 161244394 161244704 -21170538 + AluSq SINE Alu 1 310 -3 305 254 79 87 chr6 161244704 161245003 -21170239 + L1ME LINE L1 5436 5733 -388 27 49 0 0 chr6 161245121 161245162 -21170080 + AT_rich Low_complexity Low_complexity 1 41 0 2182 114 20 0 chr6 161245418 161245716 -21169526 + AluSg SINE Alu 1 304 -6 826 181 0 0 chr6 161245766 161245899 -21169343 + FLAM_C SINE Alu 1 133 0 1346 186 0 8 chr6 161246649 161246885 -21168357 + AluJo SINE Alu 69 302 -10 325 271 178 8 chr6 161248105 161248223 -21167019 + MIR3 SINE MIR 15 152 -56 952 178 0 28 chr6 161248263 161248443 -21166799 + FAM SINE Alu 1 175 0 2187 119 0 0 chr6 161248558 161248867 -21166375 - AluSq SINE Alu 0 309 1 2586 66 0 0 chr6 161249212 161249517 -21165725 + AluY SINE Alu 2 306 -5 2019 107 15 4 chr6 161249540 161249812 -21165430 - AluSx SINE Alu -37 275 1 1000 144 0 7 chr6 161249867 161250013 -21165229 + AluJo SINE Alu 1 145 -167 2500 81 3 0 chr6 161250415 161250724 -21164518 - AluSp SINE Alu -3 310 1 2230 114 0 13 chr6 161250733 161251041 -21164201 - AluSx SINE Alu -8 304 1 2091 84 0 0 chr6 161251049 161251325 -21163917 - AluSp SINE Alu 0 309 34 272 258 21 52 chr6 161252175 161252272 -21162970 + MIR3 SINE MIR 11 104 -104 259 279 158 0 chr6 161252861 161252967 -21162275 + MIR SINE MIR 35 153 -65 2039 131 3 13 chr6 161253080 161253386 -21161856 - AluSx SINE Alu -9 303 1 2061 134 20 3 chr6 161253451 161253749 -21161493 - AluSx SINE Alu -9 303 1 253 288 65 0 chr6 161253914 161254053 -21161189 - L1ME LINE L1 -210 5911 5764 2249 91 3 0 chr6 161254958 161255244 -21159998 - AluSc SINE Alu -21 288 2 2009 97 0 4 chr6 161256823 161257082 -21158160 + AluSq SINE Alu 1 258 -55 449 230 10 10 chr6 161257101 161257201 -21158041 - AluJ SINE Alu -30 282 183 * 748 154 85 0 chr6 161257192 161257322 -21157920 - AluJ SINE Alu -170 142 2 1327 205 116 1 chr6 161257380 161257432 -21157810 - L1MB3 LINE L1 -173 6010 5965 740 159 71 16 chr6 161257432 161257614 -21157628 - L1MB4 LINE L1 -1 6179 5988 1327 205 116 1 chr6 161257614 161257913 -21157329 - L1MB3 LINE L1 -218 5965 5615 2393 105 0 0 chr6 161257913 161258217 -21157025 - AluSx SINE Alu -8 304 1 1327 205 116 1 chr6 161258217 161258245 -21156997 - L1MB3 LINE L1 -568 5615 5592 301 291 47 14 chr6 161258245 161258393 -21156849 + L2 LINE L2 3159 3311 -2 252 360 0 56 chr6 161259502 161259627 -21155615 + L2 LINE L2 3173 3290 -23 436 272 142 32 chr6 161259627 161260064 -21155178 + L1ME LINE L1 5304 5782 -339 667 316 58 4 chr6 161260687 161260962 -21154280 - L1ME LINE L1 -299 5822 5533 588 202 0 0 chr6 161260988 161261102 -21154140 + L1MA3 LINE L1 6191 6304 -1 348 284 47 20 chr6 161262208 161262356 -21152886 - L2 LINE L2 -2 3311 3160 2405 92 7 0 chr6 161263507 161263811 -21151431 - AluSx SINE Alu -6 306 1 194 33 67 0 chr6 161264387 161264417 -21150825 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2231 99 18 0 chr6 161264419 161264702 -21150540 - AluSq SINE Alu -25 288 1 2298 122 0 0 chr6 161265322 161265633 -21149609 - AluSx SINE Alu -1 311 1 906 150 86 0 chr6 161265737 161265924 -21149318 + L1MA8 LINE L1 6083 6285 -6 21 36 0 0 chr6 161265959 161265987 -21149255 + AT_rich Low_complexity Low_complexity 1 28 0 1988 98 63 14 chr6 161266303 161266588 -21148654 + AluSg SINE Alu 1 299 -11 429 129 0 0 chr6 161267611 161267673 -21147569 - MSTA LTR MaLR 0 428 367 2372 90 0 7 chr6 161267796 161268097 -21147145 + AluSg SINE Alu 1 299 -11 2324 113 131 8 chr6 161268549 161268930 -21146312 - MSTA LTR MaLR 0 428 1 1965 130 10 23 chr6 161268958 161269266 -21145976 + AluSx SINE Alu 1 304 -8 220 327 155 36 chr6 161269860 161270337 -21144905 + L2 LINE L2 2225 2758 -556 386 273 9 18 chr6 161270642 161270752 -21144490 + L2 LINE L2 3164 3272 0 2186 92 3 26 chr6 161270896 161271228 -21144014 - AluSx SINE Alu 0 312 5 2483 76 7 0 chr6 161271261 161271563 -21143679 - AluSq SINE Alu -8 305 2 1098 96 0 0 chr6 161271564 161271699 -21143543 - AluSq/x SINE Alu -177 135 1 729 79 0 122 chr6 161271808 161271947 -21143295 + AluSg/x SINE Alu 176 297 -13 329 280 15 61 chr6 161272570 161272702 -21142540 + MER5B DNA MER1_type 1 126 -52 582 189 19 0 chr6 161272806 161272912 -21142330 - MER3 DNA MER1_type -3 206 99 273 325 172 7 chr6 161273284 161273435 -21141807 + MIR3 SINE MIR 32 207 -1 408 136 111 0 chr6 161273480 161273561 -21141681 + L1MA8 LINE L1 5955 6044 -247 1962 129 16 16 chr6 161273607 161273916 -21141326 - AluSx SINE Alu -3 309 1 21 0 0 0 chr6 161273963 161273984 -21141258 + AT_rich Low_complexity Low_complexity 1 21 0 441 269 13 27 chr6 161274691 161274840 -21140402 + MIR SINE MIR 49 195 -67 292 262 71 0 chr6 161274841 161274925 -21140317 - L2 LINE L2 -1 3312 3223 558 188 80 0 chr6 161274925 161275037 -21140205 + FLAM_A SINE Alu 5 125 -8 318 148 23 102 chr6 161276131 161276219 -21139023 + MIR3 SINE MIR 82 162 -46 237 261 68 75 chr6 161276558 161276719 -21138523 + MIR SINE MIR 86 245 -17 2374 155 81 30 chr6 161276828 161277142 -21138100 - L1MB2 LINE L1 -2 6169 5822 2485 93 0 3 chr6 161277142 161277455 -21137787 - AluSp SINE Alu -1 312 1 2374 155 81 30 chr6 161277455 161277610 -21137632 - L1MB2 LINE L1 -349 5822 5676 1824 101 4 16 chr6 161278373 161278630 -21136612 + AluSx SINE Alu 41 294 -18 440 261 94 33 chr6 161278989 161279265 -21135977 + L1M4 LINE L1 5050 5342 -804 349 320 41 16 chr6 161279416 161279538 -21135704 - L2 LINE L2 -9 3263 3139 2205 112 10 0 chr6 161280320 161280615 -21134627 - AluSx SINE Alu -14 298 1 335 293 37 0 chr6 161281131 161281275 -21133967 - MIR SINE MIR -62 146 42 2276 101 7 0 chr6 161281375 161281672 -21133570 + AluSq SINE Alu 1 299 -14 2109 133 3 7 chr6 161281908 161282217 -21133025 - AluSx SINE Alu -4 308 1 779 177 15 0 chr6 161283014 161283144 -21132098 + FLAM_A SINE Alu 1 132 -1 2482 231 29 5 chr6 161283325 161283880 -21131362 - MER119 DNA MER1_type 0 583 16 661 159 134 95 chr6 161283986 161284218 -21131024 - MER58B DNA MER1_type -13 328 88 1587 185 13 40 chr6 161284221 161284519 -21130723 + AluJo SINE Alu 1 290 -22 243 88 0 0 chr6 161284519 161284553 -21130689 + (GA)n Simple_repeat Simple_repeat 1 34 0 26 64 0 0 chr6 161284610 161284657 -21130585 + AT_rich Low_complexity Low_complexity 1 47 0 429 325 60 31 chr6 161284796 161285115 -21130127 - L1ME LINE L1 -349 5821 5488 2229 129 0 0 chr6 161285115 161285417 -21129825 - AluSx SINE Alu -10 302 1 429 325 60 31 chr6 161285417 161285478 -21129764 - L1ME LINE L1 -682 5488 5430 320 361 32 0 chr6 161285521 161285679 -21129563 - L1ME LINE L1 -817 5329 5167 195 42 0 0 chr6 161286191 161286215 -21129027 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1527 165 71 4 chr6 161286218 161286484 -21128758 - AluJb SINE Alu -24 288 5 26 30 0 0 chr6 161286532 161286565 -21128677 + AT_rich Low_complexity Low_complexity 1 33 0 233 241 0 0 chr6 161286978 161287032 -21128210 + A-rich Low_complexity Low_complexity 1 54 0 25 51 0 0 chr6 161287104 161287143 -21128099 + AT_rich Low_complexity Low_complexity 1 39 0 192 247 16 34 chr6 161287355 161287442 -21127800 + MIR SINE MIR 43 132 -76 2177 115 44 0 chr6 161287811 161288107 -21127135 + AluSg SINE Alu 1 309 -1 1555 126 153 8 chr6 161288848 161289109 -21126133 - MER1B DNA MER1_type -6 333 35 2074 133 10 0 chr6 161289126 161289419 -21125823 - AluSx SINE Alu -16 296 1 223 267 27 13 chr6 161289701 161289776 -21125466 + MIR SINE MIR 108 183 -79 585 269 36 22 chr6 161289872 161290095 -21125147 - MIR SINE MIR -29 233 8 2191 110 3 0 chr6 161291041 161291323 -21123919 - AluSp SINE Alu -30 283 1 1134 68 0 0 chr6 161291325 161291457 -21123785 - AluSp SINE Alu -181 132 1 376 293 82 38 chr6 161291712 161292210 -21123032 + L1M4 LINE L1 4015 4534 -1612 207 162 0 0 chr6 161292266 161292303 -21122939 + (CTATA)n Simple_repeat Simple_repeat 4 40 0 2368 89 3 0 chr6 161292414 161292707 -21122535 + AluSx SINE Alu 1 294 -18 2234 121 0 6 chr6 161292864 161293179 -21122063 - AluSq SINE Alu 0 313 1 2126 126 0 3 chr6 161293272 161293574 -21121668 - AluSx SINE Alu -11 301 1 189 267 56 33 chr6 161294223 161294313 -21120929 - L2 LINE L2 -227 3086 2995 1728 151 43 0 chr6 161295750 161296029 -21119213 - AluJb SINE Alu -21 291 1 225 94 0 0 chr6 161296483 161296515 -21118727 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 918 234 213 11 chr6 161296530 161296803 -21118439 - MLT1J LTR MaLR -67 444 117 2463 64 7 0 chr6 161297651 161297949 -21117293 + AluSp SINE Alu 1 300 -13 2206 83 28 7 chr6 161298088 161298378 -21116864 - AluSq SINE Alu -17 296 1 737 184 44 0 chr6 161298748 161298884 -21116358 - AluJo SINE Alu -168 144 3 1861 130 70 7 chr6 161299924 161300208 -21115034 + AluJb SINE Alu 1 302 -10 415 289 85 19 chr6 161300421 161300632 -21114610 + MER112 DNA MER1_type 3 227 -33 1895 139 26 41 chr6 161300928 161301112 -21114130 + MER46B DNA MER2_type 1 186 -2545 1834 143 3 47 chr6 161301112 161301413 -21113829 + AluSx SINE Alu 1 288 -24 186 43 0 0 chr6 161301413 161301436 -21113806 + (TA)n Simple_repeat Simple_repeat 2 24 0 1895 139 26 41 chr6 161301436 161301594 -21113648 + MER46B DNA MER2_type 184 214 -22 23 86 0 0 chr6 161302026 161302084 -21113158 + AT_rich Low_complexity Low_complexity 1 58 0 2403 92 3 0 chr6 161302475 161302778 -21112464 + AluSc SINE Alu 1 304 -5 436 242 99 63 chr6 161304618 161304841 -21110401 + MIR SINE MIR 22 252 -10 634 147 163 111 chr6 161305270 161305460 -21109782 - MER20 DNA MER1_type -13 206 7 2307 92 0 0 chr6 161305667 161305960 -21109282 + AluSq SINE Alu 1 293 -20 27 0 0 0 chr6 161306418 161306445 -21108797 + AT_rich Low_complexity Low_complexity 1 27 0 2016 94 67 0 chr6 161306491 161306758 -21108484 + AluSx SINE Alu 14 298 -14 1389 106 48 0 chr6 161308013 161308201 -21107041 + AluSq SINE Alu 96 292 -21 195 332 71 75 chr6 161308449 161308744 -21106498 - L2 LINE L2 -20 3252 2959 439 302 78 29 chr6 161310390 161310698 -21104544 + L1ME4a LINE L1 5551 5873 -248 330 309 10 0 chr6 161310885 161310982 -21104260 - MER5A DNA MER1_type -83 106 9 2376 91 0 16 chr6 161311252 161311560 -21103682 + AluSq SINE Alu 1 303 -10 1970 113 20 27 chr6 161311669 161311962 -21103280 + AluSg SINE Alu 1 291 -19 205 73 24 49 chr6 161313085 161313126 -21102116 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 205 274 62 26 chr6 161313367 161313480 -21101762 - MIR SINE MIR -97 165 49 339 286 48 27 chr6 161313812 161313959 -21101283 - MIR3 SINE MIR -29 179 30 1054 141 238 66 chr6 161314199 161314455 -21100787 + AluYa5 SINE Alu 2 301 0 1575 218 21 52 chr6 161315091 161315513 -21099729 - MLT2D LTR ERVL 0 414 6 1831 134 8 4 chr6 161315516 161315784 -21099458 + AluJo SINE Alu 1 269 -43 519 261 25 12 chr6 161315908 161316069 -21099173 - MER5B DNA MER1_type -15 163 1 1919 110 62 41 chr6 161316350 161316642 -21098600 + AluSx SINE Alu 3 300 -12 198 0 0 0 chr6 161317624 161317646 -21097596 + (T)n Simple_repeat Simple_repeat 1 22 0 2217 108 0 20 chr6 161318222 161318527 -21096715 + AluSx SINE Alu 1 299 -13 2100 113 20 3 chr6 161318746 161319038 -21096204 - AluSg1 SINE Alu -12 297 1 1970 149 93 52 chr6 161319136 161319186 -21096056 - L1MB2 LINE L1 0 6171 6125 2129 118 3 10 chr6 161319186 161319492 -21095750 - AluSx SINE Alu -8 304 1 1970 149 93 52 chr6 161319492 161319704 -21095538 - L1MB2 LINE L1 -46 6125 5604 337 303 77 39 chr6 161319704 161319766 -21095476 - L1ME3A LINE L1 -276 5894 5836 2273 98 7 0 chr6 161319766 161320062 -21095180 - AluSp SINE Alu -15 298 1 337 303 77 39 chr6 161320062 161320233 -21095009 - L1ME3A LINE L1 -334 5836 5652 996 35 0 0 chr6 161320243 161320358 -21094884 - AluY SINE Alu -3 308 194 327 121 61 30 chr6 161320358 161320424 -21094818 - L1M3 LINE L1 -505 5666 5599 546 265 20 13 chr6 161320856 161321007 -21094235 - MIR SINE MIR -52 210 59 312 322 88 24 chr6 161323478 161323683 -21091559 + MIR SINE MIR 31 248 -14 2280 105 0 0 chr6 161323683 161323978 -21091264 + AluSx SINE Alu 1 295 -17 452 138 23 11 chr6 161324816 161324903 -21090339 - L1MB3 LINE L1 -8 6175 6088 2287 114 0 0 chr6 161325466 161325764 -21089478 - AluSx SINE Alu -14 298 1 1648 176 24 14 chr6 161326675 161326964 -21088278 + AluJb SINE Alu 1 292 -20 1663 162 0 0 chr6 161326964 161327217 -21088025 + AluSx SINE Alu 1 253 -59 262 167 0 0 chr6 161327266 161327314 -21087928 + AluSx SINE Alu 252 299 -2 316 240 165 33 chr6 161328808 161328929 -21086313 - MER3 DNA MER1_type -68 141 5 2326 97 0 7 chr6 161329238 161329546 -21085696 - AluSc SINE Alu -3 306 1 2308 189 56 28 chr6 161330749 161331211 -21084031 + L1MB2 LINE L1 5650 6129 -42 1500 188 64 3 chr6 161331211 161331493 -21083749 + AluJb SINE Alu 1 299 -13 2308 189 56 28 chr6 161331493 161331534 -21083708 + L1MB2 LINE L1 6129 6167 -4 25 23 0 23 chr6 161331538 161331556 -21083686 + AT_rich Low_complexity Low_complexity 1 18 -24 2173 107 3 7 chr6 161331556 161331854 -21083388 + AluSx SINE Alu 1 297 -15 25 23 0 23 chr6 161331854 161331878 -21083364 + AT_rich Low_complexity Low_complexity 18 42 0 2276 94 3 0 chr6 161331932 161332220 -21083022 + AluSx SINE Alu 1 289 -23 186 304 36 0 chr6 161332576 161332632 -21082610 - MIR SINE MIR -58 150 93 745 136 0 0 chr6 161333333 161333443 -21081799 + AluJb SINE Alu 18 127 -185 255 287 167 23 chr6 161333504 161333678 -21081564 - L3 LINE CR1 -68 1509 1311 197 200 20 0 chr6 161333768 161333818 -21081424 - L3 LINE CR1 -576 1001 951 877 302 78 35 chr6 161334032 161334576 -21080666 - L1M4 LINE L1 -913 5233 4649 2400 142 41 14 chr6 161334576 161334991 -21080251 - MSTB LTR MaLR 0 426 1 877 302 78 35 chr6 161334991 161335162 -21080080 - L1M4 LINE L1 -1497 4649 4487 357 266 75 71 chr6 161335409 161335535 -21079707 - L3 LINE CR1 -948 629 500 2325 106 0 3 chr6 161335535 161335837 -21079405 - AluSx SINE Alu -11 301 1 357 266 75 71 chr6 161335837 161335936 -21079306 - L3 LINE CR1 -1077 500 403 1765 145 48 17 chr6 161336311 161336600 -21078642 + AluJb SINE Alu 1 298 -14 681 148 17 9 chr6 161338555 161338670 -21076572 + FLAM_C SINE Alu 3 118 -15 209 122 24 0 chr6 161340963 161341004 -21074238 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 181 286 48 0 chr6 161341013 161341076 -21074166 - L2 LINE L2 -579 2735 2670 756 222 20 0 chr6 161341716 161341869 -21073373 + L1ME1 LINE L1 5961 6116 -50 666 140 0 0 chr6 161341870 161341970 -21073272 - FLAM_A SINE Alu -42 100 1 2242 89 0 0 chr6 161342052 161342332 -21072910 + AluSg SINE Alu 1 280 -30 432 55 0 0 chr6 161342335 161342390 -21072852 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1726 180 17 3 chr6 161342852 161343152 -21072090 + AluJo SINE Alu 7 310 -2 199 229 0 21 chr6 161344554 161344602 -21070640 - L3 LINE CR1 -643 934 888 251 257 182 0 chr6 161345148 161345296 -21069946 + L1ME4a LINE L1 5943 6117 -4 1836 126 3 21 chr6 161345670 161345955 -21069287 - AluSx SINE Alu 0 312 33 2300 107 0 3 chr6 161346710 161347018 -21068224 - AluSg SINE Alu -3 307 1 521 68 14 0 chr6 161348859 161348933 -21066309 + (TA)n Simple_repeat Simple_repeat 1 75 0 803 199 70 25 chr6 161349490 161349691 -21065551 - MER6B DNA MER2_type 0 210 1 2284 109 143 8 chr6 161350214 161350591 -21064651 - MSTA LTR MaLR 0 428 1 1414 209 72 45 chr6 161351212 161351491 -21063751 - MER21B LTR ERV1 -4 859 566 2244 105 0 13 chr6 161351491 161351627 -21063615 + AluSx SINE Alu 1 137 -175 2495 63 0 3 chr6 161351627 161351930 -21063312 + AluY SINE Alu 1 302 -9 2244 105 0 13 chr6 161351930 161352097 -21063145 + AluSx SINE Alu 137 300 -12 1414 209 72 45 chr6 161352097 161352176 -21063066 - MER21B LTR ERV1 -297 566 491 2957 139 98 35 chr6 161352179 161352576 -21062666 + MER21A LTR ERV1 4 375 -556 2211 116 3 0 chr6 161352576 161352879 -21062363 - AluSx SINE Alu -8 304 1 2957 139 98 35 chr6 161352879 161353248 -21061994 + MER21A LTR ERV1 375 930 -1 363 146 158 12 chr6 161353249 161353331 -21061911 - MER21B LTR ERV1 -368 495 402 615 214 63 139 chr6 161353426 161353678 -21061564 - MER21B LTR ERV1 -630 233 1 229 246 101 0 chr6 161354626 161354695 -21060547 - L2 LINE L2 -1018 2296 2221 199 286 160 34 chr6 161354721 161354896 -21060346 - L2 LINE L2 -1 3271 3075 2291 110 0 0 chr6 161355995 161356294 -21058948 + AluSx SINE Alu 1 299 -13 2101 128 7 0 chr6 161357401 161357697 -21057545 + AluSx SINE Alu 1 298 -14 675 256 30 20 chr6 161357706 161357909 -21057333 - MIR SINE MIR -10 252 48 2396 82 7 0 chr6 161357939 161358243 -21056999 - AluSp SINE Alu -7 306 1 277 302 115 7 chr6 161359197 161359336 -21055906 + L2 LINE L2 3115 3268 -4 1880 150 31 0 chr6 161359776 161360062 -21055180 + AluJb SINE Alu 1 295 -17 2109 122 7 0 chr6 161360198 161360494 -21054748 - AluSx SINE Alu -14 298 1 1189 102 6 18 chr6 161361227 161361393 -21053849 - AluSx SINE Alu -148 164 1 300 27 0 0 chr6 161361604 161361641 -21053601 + (TGG)n Simple_repeat Simple_repeat 1 37 0 1637 119 136 0 chr6 161361643 161361894 -21053348 - AluSx SINE Alu -27 285 1 211 356 136 0 chr6 161362760 161362878 -21052364 - L2 LINE L2 0 3272 3139 233 325 167 41 chr6 161363227 161363568 -21051674 - L2 LINE L2 -567 2747 2364 1951 197 80 0 chr6 161363589 161363964 -21051278 - MER68 LTR ERV1 -83 479 75 289 333 14 20 chr6 161364008 161364155 -21051087 - L2 LINE L2 -968 2346 2201 222 206 63 16 chr6 161364197 161364260 -21050982 - MIR3 SINE MIR -36 172 107 2338 69 14 7 chr6 161364572 161364860 -21050382 + AluY SINE Alu 1 290 -21 234 322 85 0 chr6 161364912 161365030 -21050212 - L2 LINE L2 -43 3270 3143 1434 36 0 0 chr6 161365294 161365462 -21049780 + L1PA5 LINE L1 5985 6152 -2 2032 114 7 7 chr6 161366728 161367030 -21048212 - AluSg SINE Alu 0 302 1 2376 89 6 10 chr6 161367208 161367521 -21047721 - AluSx SINE Alu 0 312 1 450 213 28 78 chr6 161367805 161367946 -21047296 - MLT1K LTR MaLR 0 588 455 2501 78 0 7 chr6 161368572 161368881 -21046361 + AluY SINE Alu 1 307 -4 2536 67 0 0 chr6 161368901 161369198 -21046044 + AluY SINE Alu 1 297 -14 1884 115 0 0 chr6 161369413 161369665 -21045577 - AluSg SINE Alu -14 296 45 1976 138 0 0 chr6 161369725 161370041 -21045201 - AluSx SINE Alu 0 316 1 414 57 0 0 chr6 161371659 161371712 -21043530 + (TC)n Simple_repeat Simple_repeat 2 54 0 1106 208 23 9 chr6 161372956 161373177 -21042065 - MER58A DNA MER1_type 0 224 1 2080 113 41 3 chr6 161374255 161374546 -21040696 - AluSg SINE Alu -8 302 1 1886 122 3 61 chr6 161374925 161375237 -21040005 + AluJb SINE Alu 1 294 -18 1875 246 39 23 chr6 161375290 161375851 -21039391 + L1ME LINE L1 41 610 -5786 2412 252 105 52 chr6 161375852 161377011 -21038231 + L1ME LINE L1 799 2078 -4137 1859 192 26 3 chr6 161377011 161377350 -21037892 + MER7A DNA MER2_type 2 346 0 2412 252 105 52 chr6 161377350 161378253 -21036989 + L1ME LINE L1 2078 2932 -3283 1779 202 72 42 chr6 161378249 161378506 -21036736 + L1ME LINE L1 5269 5517 -718 * 1327 150 113 40 chr6 161378506 161378780 -21036462 + AluJo SINE Alu 1 294 -18 2158 127 0 3 chr6 161378785 161379085 -21036157 + AluSx SINE Alu 1 299 -13 1779 202 72 42 chr6 161379085 161379325 -21035917 + L1ME LINE L1 5520 5787 -448 1257 206 85 114 chr6 161379412 161379778 -21035464 + HAL1 LINE L1 1155 1530 -977 1857 123 3 115 chr6 161379778 161380118 -21035124 + AluSx SINE Alu 1 302 0 1257 206 85 114 chr6 161380118 161380199 -21035043 + HAL1 LINE L1 1530 1612 -895 2392 51 41 7 chr6 161380199 161380492 -21034750 + AluY SINE Alu 1 303 -8 1257 206 85 114 chr6 161380492 161380629 -21034613 + HAL1 LINE L1 1612 1723 -784 604 137 137 68 chr6 161380630 161380776 -21034466 + AluJo SINE Alu 44 199 -113 1515 185 211 46 chr6 161380806 161381260 -21033982 - MLT1E LTR MaLR -2 591 63 367 303 142 9 chr6 161381519 161381737 -21033505 + HAL1 LINE L1 2048 2294 -213 221 57 29 0 chr6 161381851 161381886 -21033356 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 501 79 0 0 chr6 161381888 161381951 -21033291 - AluSp/q SINE Alu -26 287 225 2005 94 4 0 chr6 161381952 161382206 -21033036 - AluSp SINE Alu -58 255 1 22 0 0 0 chr6 161382281 161382303 -21032939 + AT_rich Low_complexity Low_complexity 1 22 0 2081 130 0 10 chr6 161382310 161382609 -21032633 + AluSx SINE Alu 1 296 -16 1440 132 44 48 chr6 161383039 161383311 -21031931 - MLT1B LTR MaLR 0 390 120 578 135 0 29 chr6 161383311 161383415 -21031827 - FRAM SINE Alu -5 171 71 304 194 139 14 chr6 161383415 161383487 -21031755 - MLT1B LTR MaLR -305 85 5 1903 103 20 63 chr6 161383788 161384088 -21031154 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr6 161384510 161384531 -21030711 + AT_rich Low_complexity Low_complexity 1 21 0 2272 80 0 7 chr6 161385613 161385913 -21029329 - AluSc SINE Alu -11 298 1 485 230 20 74 chr6 161386299 161386447 -21028795 + MIR SINE MIR 119 258 -4 326 154 108 0 chr6 161386553 161386618 -21028624 + L1MC5 LINE L1 6975 7046 -915 701 178 0 0 chr6 161386878 161386996 -21028246 - FLAM_C SINE Alu -15 118 1 2502 40 0 7 chr6 161387101 161387402 -21027840 + AluY SINE Alu 1 299 -12 312 70 0 0 chr6 161387402 161387445 -21027797 + (TA)n Simple_repeat Simple_repeat 1 43 0 29 47 0 0 chr6 161387505 161387548 -21027694 + AT_rich Low_complexity Low_complexity 1 43 0 2175 101 0 0 chr6 161387906 161388202 -21027040 + AluSx SINE Alu 1 296 -16 215 238 0 0 chr6 161388688 161388730 -21026512 + CT-rich Low_complexity Low_complexity 1 42 0 1740 166 7 7 chr6 161388958 161389247 -21025995 - AluJb SINE Alu -23 289 1 199 219 24 0 chr6 161389249 161389290 -21025952 - L2 LINE L2 -15 3257 3216 1838 141 3 0 chr6 161389385 161389714 -21025528 + AluSx SINE Alu 1 330 0 1701 134 46 46 chr6 161390868 161391174 -21024068 - AluSx SINE Alu -6 306 1 2192 86 7 3 chr6 161391737 161392029 -21023213 + AluSx SINE Alu 1 293 -19 226 224 0 60 chr6 161392659 161392726 -21022516 + CT-rich Low_complexity Low_complexity 6 68 0 384 250 189 0 chr6 161392803 161392935 -21022307 - MER5A DNA MER1_type -24 165 9 487 269 26 13 chr6 161393960 161394116 -21021126 + MIR SINE MIR 58 215 -47 817 253 86 20 chr6 161394160 161394405 -21020837 + MIR SINE MIR 2 262 0 1516 216 52 35 chr6 161395434 161395823 -21019419 - MLT1C LTR MaLR 0 467 67 2043 80 0 0 chr6 161395823 161396087 -21019155 + AluSg1 SINE Alu 30 293 -16 1516 216 52 35 chr6 161396087 161396156 -21019086 - MLT1C LTR MaLR -400 67 1 1530 104 4 48 chr6 161396777 161396955 -21018287 - AluSx SINE Alu 0 303 138 2044 131 0 0 chr6 161396955 161397261 -21017981 - AluSx SINE Alu -6 306 1 1530 104 4 48 chr6 161397261 161397352 -21017890 - AluSx SINE Alu -165 138 45 206 231 0 0 chr6 161398079 161398118 -21017124 - MIR SINE MIR -25 237 199 291 343 89 12 chr6 161398303 161398472 -21016770 - MIR SINE MIR -72 190 9 2703 160 23 39 chr6 161399777 161400310 -21014932 + L1MA4A LINE L1 5750 6275 -28 1832 147 3 0 chr6 161400310 161400596 -21014646 + AluSx SINE Alu 1 287 -25 2703 160 23 39 chr6 161400596 161400625 -21014617 + L1MA4A LINE L1 6275 6303 0 2136 117 0 0 chr6 161401311 161401610 -21013632 + AluSx SINE Alu 1 299 -13 1981 65 0 11 chr6 161402439 161402701 -21012541 - AluY SINE Alu 0 311 53 2173 110 0 0 chr6 161403294 161403593 -21011649 + AluSx SINE Alu 1 299 -13 1931 146 7 0 chr6 161405281 161405590 -21009652 - AluJb SINE Alu -1 311 1 21 0 0 0 chr6 161405680 161405701 -21009541 + AT_rich Low_complexity Low_complexity 1 21 0 185 352 7 62 chr6 161406045 161406190 -21009052 + L3b LINE CR1 1233 1369 -214 2184 122 0 0 chr6 161406489 161406801 -21008441 - AluSx SINE Alu 0 312 1 2245 84 13 0 chr6 161407147 161407446 -21007796 - AluSg1 SINE Alu -6 303 1 1325 188 63 105 chr6 161407617 161407741 -21007501 + Charlie4a DNA MER1_type 24 152 -1809 1805 153 10 3 chr6 161407741 161408036 -21007206 - AluJb SINE Alu -15 297 1 1325 188 63 105 chr6 161408036 161408273 -21006969 + Charlie4a DNA MER1_type 152 361 -1600 1843 115 68 0 chr6 161408273 161408551 -21006691 + AluSq SINE Alu 1 297 -16 1325 188 63 105 chr6 161408551 161408694 -21006548 + Charlie4a DNA MER1_type 361 508 0 2213 101 13 0 chr6 161409434 161409742 -21005500 - AluSx SINE Alu 0 312 1 1613 182 3 22 chr6 161409815 161410128 -21005114 - AluJb SINE Alu -5 307 1 1019 139 5 53 chr6 161410427 161410636 -21004606 + AluJo SINE Alu 114 312 0 486 284 37 19 chr6 161410637 161410799 -21004443 + MER5A DNA MER1_type 18 182 -7 262 313 0 12 chr6 161410811 161410891 -21004351 + L2 LINE L2 3234 3312 -1 196 281 24 73 chr6 161411198 161411280 -21003962 - L2 LINE L2 -6 3266 3189 2290 91 0 3 chr6 161411455 161411764 -21003478 - AluSc SINE Alu -1 308 1 1826 106 0 19 chr6 161413311 161413575 -21001667 + AluSx SINE Alu 49 307 -5 1636 153 24 17 chr6 161413888 161414182 -21001060 - AluJb SINE Alu -16 296 1 626 299 20 59 chr6 161414420 161414691 -21000551 - MIR SINE MIR -2 260 3 1973 142 0 13 chr6 161415282 161415593 -20999649 + AluSx SINE Alu 1 307 -5 218 347 169 25 chr6 161415816 161416058 -20999184 - L2 LINE L2 -20 3252 2976 819 238 70 5 chr6 161416184 161416398 -20998844 + MIR SINE MIR 34 261 -1 187 378 74 15 chr6 161416500 161416635 -20998607 - L2 LINE L2 -2607 707 565 2371 39 0 0 chr6 161417428 161417747 -20997495 + AluY SINE Alu 1 319 0 21 0 0 0 chr6 161418269 161418290 -20996952 + AT_rich Low_complexity Low_complexity 1 21 0 1105 141 0 18 chr6 161418309 161418479 -20996763 + FAM SINE Alu 1 167 -8 2398 186 71 31 chr6 161418642 161419134 -20996108 + L1MB4 LINE L1 5593 6109 -71 1917 117 21 0 chr6 161419134 161419425 -20995817 + AluSq SINE Alu 1 297 -16 2398 186 71 31 chr6 161419425 161419454 -20995788 + L1MB4 LINE L1 6109 6135 -45 943 163 0 0 chr6 161419454 161419607 -20995635 + FRAM SINE Alu 1 146 -30 213 39 0 0 chr6 161419610 161419636 -20995606 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 415 278 78 54 chr6 161419898 161420008 -20995234 + MIR SINE MIR 34 140 -122 1691 174 0 3 chr6 161420008 161420290 -20994952 + AluJo SINE Alu 1 281 -31 219 69 0 0 chr6 161420293 161420322 -20994920 + (TAA)n Simple_repeat Simple_repeat 1 29 0 415 278 78 54 chr6 161420322 161420412 -20994830 + MIR SINE MIR 141 243 -19 2273 94 0 0 chr6 161420473 161420770 -20994472 - AluSx SINE Alu -15 297 1 1097 131 0 6 chr6 161421621 161421789 -20993453 + L1MB3 LINE L1 6007 6173 -10 1312 161 0 5 chr6 161421816 161422027 -20993215 - AluJo SINE Alu -102 210 1 238 244 24 171 chr6 161422129 161422211 -20993031 + MIR SINE MIR 44 114 -94 1052 94 0 0 chr6 161422211 161422349 -20992893 - AluSq/x SINE Alu -175 138 1 420 325 91 9 chr6 161422423 161422654 -20992588 - MIR SINE MIR 0 262 13 2105 116 0 0 chr6 161423814 161424108 -20991134 - AluSx SINE Alu -18 294 1 1327 265 94 48 chr6 161424228 161424794 -20990448 - MLT1G1 LTR MaLR 0 595 4 1670 163 49 0 chr6 161424937 161425225 -20990017 + AluJo SINE Alu 1 302 -10 912 134 0 0 chr6 161425468 161425602 -20989640 + AluSq/x SINE Alu 1 134 -178 2273 80 0 16 chr6 161425603 161425917 -20989325 + AluY SINE Alu 1 309 -2 3410 115 27 127 chr6 161425918 161426351 -20988891 + Tigger3(Golem) DNA MER2_type 2393 2729 -299 2116 120 0 0 chr6 161426351 161426650 -20988592 - AluSq SINE Alu -14 299 1 3410 115 27 127 chr6 161426650 161426923 -20988319 + Tigger3(Golem) DNA MER2_type 2729 3028 0 2204 75 4 0 chr6 161427046 161427349 -20987893 + AluY SINE Alu 1 304 0 229 180 158 0 chr6 161427771 161427838 -20987404 + MIR SINE MIR 81 145 -63 341 343 59 29 chr6 161428355 161428559 -20986683 + L3 LINE CR1 1359 1568 -9 309 259 25 0 chr6 161429130 161429211 -20986031 + L1MC4 LINE L1 6609 6691 -1351 1967 143 0 10 chr6 161429317 161429625 -20985617 - AluJb SINE Alu -7 305 1 327 361 49 7 chr6 161429680 161429824 -20985418 + MLT1K LTR MaLR 14 163 -425 2096 149 35 16 chr6 161429829 161430197 -20985045 + THE1C LTR MaLR 1 375 0 1949 95 18 0 chr6 161430197 161430480 -20984762 + THE1C-int LTR MaLR 1 288 -1292 1976 152 110 33 chr6 161430507 161430935 -20984307 + LTR10A LTR ERV1 82 542 -67 4987 136 33 51 chr6 161430945 161431362 -20983880 + THE1C-int LTR MaLR 283 679 -901 216 0 0 0 chr6 161431362 161431386 -20983856 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4987 136 33 51 chr6 161431386 161431797 -20983445 + THE1C-int LTR MaLR 679 1096 -484 1539 159 110 65 chr6 161431797 161432225 -20983017 + LTR7 LTR ERV1 1 447 -3 3443 90 11 11 chr6 161432226 161432703 -20982539 + THE1C-int LTR MaLR 1098 1574 -6 2015 136 29 32 chr6 161432705 161433081 -20982161 + THE1C LTR MaLR 1 375 0 1008 284 39 47 chr6 161433089 161433451 -20981791 + MLT1K LTR MaLR 205 563 -25 22 0 0 0 chr6 161433648 161433670 -20981572 + AT_rich Low_complexity Low_complexity 1 22 0 186 337 89 77 chr6 161434354 161434443 -20980799 - L2 LINE L2 -575 2739 2653 2321 87 3 0 chr6 161434443 161434752 -20980490 + AluSx SINE Alu 1 310 -2 472 56 0 0 chr6 161434682 161434754 -20980488 + Alu SINE Alu 240 311 0 186 337 89 77 chr6 161434752 161434831 -20980411 - L2 LINE L2 -661 2653 2569 * 1054 245 74 74 chr6 161434861 161435270 -20979972 + MLT1C LTR MaLR 1 412 -55 2127 154 30 28 chr6 161435270 161435633 -20979609 + THE1B LTR MaLR 1 364 0 1054 245 74 74 chr6 161435633 161435684 -20979558 + MLT1C LTR MaLR 411 461 -6 1294 170 5 18 chr6 161435903 161436121 -20979121 + AluJb SINE Alu 1 215 -97 22 0 0 0 chr6 161486350 161486372 -20928870 + AT_rich Low_complexity Low_complexity 1 22 0 1961 130 0 10 chr6 161486379 161486678 -20928564 + AluSx SINE Alu 1 296 -16 1455 132 44 48 chr6 161487108 161487380 -20927862 - MLT1B LTR MaLR 0 390 120 581 135 0 29 chr6 161487380 161487484 -20927758 - FRAM SINE Alu -5 171 71 307 194 139 14 chr6 161487484 161487556 -20927686 - MLT1B LTR MaLR -305 85 5 1783 103 20 63 chr6 161487857 161488157 -20927085 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr6 161488579 161488600 -20926642 + AT_rich Low_complexity Low_complexity 1 21 0 2272 80 0 7 chr6 161489682 161489982 -20925260 - AluSc SINE Alu -11 298 1 485 230 20 74 chr6 161490368 161490516 -20924726 + MIR SINE MIR 119 258 -4 326 154 108 0 chr6 161490622 161490687 -20924555 + L1MC5 LINE L1 6975 7046 -915 701 178 0 0 chr6 161490947 161491065 -20924177 - FLAM_C SINE Alu -15 118 1 2538 39 0 7 chr6 161491170 161491475 -20923767 + AluY SINE Alu 1 303 -8 276 77 0 0 chr6 161491475 161491514 -20923728 + (TA)n Simple_repeat Simple_repeat 2 40 0 29 47 0 0 chr6 161491574 161491617 -20923625 + AT_rich Low_complexity Low_complexity 1 43 0 2175 101 0 0 chr6 161491975 161492271 -20922971 + AluSx SINE Alu 1 296 -16 215 238 0 0 chr6 161492757 161492799 -20922443 + CT-rich Low_complexity Low_complexity 1 42 0 1740 166 7 7 chr6 161493027 161493316 -20921926 - AluJb SINE Alu -23 289 1 199 219 24 0 chr6 161493318 161493359 -20921883 - L2 LINE L2 -15 3257 3216 1838 141 3 0 chr6 161493454 161493787 -20921455 + AluSx SINE Alu 1 334 0 1701 134 46 46 chr6 161494942 161495248 -20919994 - AluSx SINE Alu -6 306 1 2192 86 7 3 chr6 161495811 161496103 -20919139 + AluSx SINE Alu 1 293 -19 226 224 0 60 chr6 161496733 161496800 -20918442 + CT-rich Low_complexity Low_complexity 6 68 0 384 250 189 0 chr6 161496877 161497009 -20918233 - MER5A DNA MER1_type -24 165 9 487 269 26 13 chr6 161498034 161498190 -20917052 + MIR SINE MIR 58 215 -47 817 253 86 20 chr6 161498234 161498479 -20916763 + MIR SINE MIR 2 262 0 1516 216 52 35 chr6 161499508 161499897 -20915345 - MLT1C LTR MaLR 0 467 67 2043 80 0 0 chr6 161499897 161500161 -20915081 + AluSg1 SINE Alu 30 293 -16 1516 216 52 35 chr6 161500161 161500230 -20915012 - MLT1C LTR MaLR -400 67 1 1530 104 4 48 chr6 161500851 161501029 -20914213 - AluSx SINE Alu 0 303 138 2044 131 0 0 chr6 161501029 161501335 -20913907 - AluSx SINE Alu -6 306 1 1530 104 4 48 chr6 161501335 161501426 -20913816 - AluSx SINE Alu -165 138 45 206 231 0 0 chr6 161502153 161502192 -20913050 - MIR SINE MIR -25 237 199 291 343 89 12 chr6 161502377 161502546 -20912696 - MIR SINE MIR -72 190 9 2703 160 23 39 chr6 161503851 161504384 -20910858 + L1MA4A LINE L1 5750 6275 -28 1832 147 3 0 chr6 161504384 161504670 -20910572 + AluSx SINE Alu 1 287 -25 2703 160 23 39 chr6 161504670 161504699 -20910543 + L1MA4A LINE L1 6275 6303 0 2136 117 0 0 chr6 161505385 161505684 -20909558 + AluSx SINE Alu 1 299 -13 1981 65 0 11 chr6 161506513 161506775 -20908467 - AluY SINE Alu 0 311 53 2173 110 0 0 chr6 161507368 161507667 -20907575 + AluSx SINE Alu 1 299 -13 1931 146 7 0 chr6 161509484 161509793 -20905449 - AluJb SINE Alu -1 311 1 21 0 0 0 chr6 161509883 161509904 -20905338 + AT_rich Low_complexity Low_complexity 1 21 0 185 352 7 62 chr6 161510248 161510393 -20904849 + L3b LINE CR1 1233 1369 -214 2184 122 0 0 chr6 161510692 161511004 -20904238 - AluSx SINE Alu 0 312 1 2245 84 13 0 chr6 161511350 161511649 -20903593 - AluSg1 SINE Alu -6 303 1 1325 188 63 105 chr6 161511820 161511944 -20903298 + Charlie4a DNA MER1_type 24 152 -1809 1805 153 10 3 chr6 161511944 161512239 -20903003 - AluJb SINE Alu -15 297 1 1325 188 63 105 chr6 161512239 161512476 -20902766 + Charlie4a DNA MER1_type 152 361 -1600 1843 115 68 0 chr6 161512476 161512754 -20902488 + AluSq SINE Alu 1 297 -16 1325 188 63 105 chr6 161512754 161512897 -20902345 + Charlie4a DNA MER1_type 361 508 0 2213 101 13 0 chr6 161513637 161513945 -20901297 - AluSx SINE Alu 0 312 1 1613 182 3 22 chr6 161514018 161514331 -20900911 - AluJb SINE Alu -5 307 1 1019 139 5 53 chr6 161514630 161514839 -20900403 + AluJo SINE Alu 114 312 0 486 284 37 19 chr6 161514840 161515002 -20900240 + MER5A DNA MER1_type 18 182 -7 262 313 0 12 chr6 161515014 161515094 -20900148 + L2 LINE L2 3234 3312 -1 196 281 24 73 chr6 161515401 161515483 -20899759 - L2 LINE L2 -6 3266 3189 2290 91 0 3 chr6 161515658 161515967 -20899275 - AluSc SINE Alu -1 308 1 1826 106 0 19 chr6 161517514 161517778 -20897464 + AluSx SINE Alu 49 307 -5 1636 153 24 17 chr6 161518091 161518385 -20896857 - AluJb SINE Alu -16 296 1 626 299 20 59 chr6 161518623 161518894 -20896348 - MIR SINE MIR -2 260 3 1973 142 0 13 chr6 161519485 161519796 -20895446 + AluSx SINE Alu 1 307 -5 218 347 169 25 chr6 161520019 161520261 -20894981 - L2 LINE L2 -20 3252 2976 819 238 70 5 chr6 161520387 161520601 -20894641 + MIR SINE MIR 34 261 -1 187 378 74 15 chr6 161520703 161520838 -20894404 - L2 LINE L2 -2607 707 565 2371 39 0 0 chr6 161521631 161521953 -20893289 + AluY SINE Alu 1 322 0 21 0 0 0 chr6 161522475 161522496 -20892746 + AT_rich Low_complexity Low_complexity 1 21 0 1105 141 0 18 chr6 161522515 161522685 -20892557 + FAM SINE Alu 1 167 -8 2398 186 71 31 chr6 161522848 161523340 -20891902 + L1MB4 LINE L1 5593 6109 -71 1917 117 21 0 chr6 161523340 161523631 -20891611 + AluSq SINE Alu 1 297 -16 2398 186 71 31 chr6 161523631 161523660 -20891582 + L1MB4 LINE L1 6109 6135 -45 943 163 0 0 chr6 161523660 161523813 -20891429 + FRAM SINE Alu 1 146 -30 213 39 0 0 chr6 161523816 161523842 -20891400 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 415 278 78 54 chr6 161524104 161524214 -20891028 + MIR SINE MIR 34 140 -122 1691 174 0 3 chr6 161524214 161524496 -20890746 + AluJo SINE Alu 1 281 -31 219 69 0 0 chr6 161524499 161524528 -20890714 + (TAA)n Simple_repeat Simple_repeat 1 29 0 415 278 78 54 chr6 161524528 161524618 -20890624 + MIR SINE MIR 141 243 -19 2273 94 0 0 chr6 161524679 161524976 -20890266 - AluSx SINE Alu -15 297 1 1097 131 0 6 chr6 161525827 161525995 -20889247 + L1MB3 LINE L1 6007 6173 -10 1312 161 0 5 chr6 161526022 161526233 -20889009 - AluJo SINE Alu -102 210 1 238 244 24 171 chr6 161526335 161526417 -20888825 + MIR SINE MIR 44 114 -94 1052 94 0 0 chr6 161526417 161526555 -20888687 - AluSq/x SINE Alu -175 138 1 420 325 91 9 chr6 161526629 161526860 -20888382 - MIR SINE MIR 0 262 13 2105 116 0 0 chr6 161528020 161528314 -20886928 - AluSx SINE Alu -18 294 1 1324 265 94 48 chr6 161528434 161529000 -20886242 - MLT1G1 LTR MaLR 0 595 4 1670 163 49 0 chr6 161529143 161529431 -20885811 + AluJo SINE Alu 1 302 -10 912 134 0 0 chr6 161529674 161529808 -20885434 + AluSq/x SINE Alu 1 134 -178 2273 80 0 16 chr6 161529809 161530123 -20885119 + AluY SINE Alu 1 309 -2 3410 115 27 127 chr6 161530124 161530557 -20884685 + Tigger3(Golem) DNA MER2_type 2393 2729 -299 2124 120 0 0 chr6 161530557 161530857 -20884385 - AluSq SINE Alu -13 300 1 3410 115 27 127 chr6 161530857 161531130 -20884112 + Tigger3(Golem) DNA MER2_type 2729 3028 0 2204 75 4 0 chr6 161531253 161531556 -20883686 + AluY SINE Alu 1 304 0 229 180 158 0 chr6 161531978 161532045 -20883197 + MIR SINE MIR 81 145 -63 341 343 59 29 chr6 161532562 161532766 -20882476 + L3 LINE CR1 1359 1568 -9 309 259 25 0 chr6 161533337 161533418 -20881824 + L1MC4 LINE L1 6609 6691 -1351 1967 143 0 10 chr6 161533524 161533832 -20881410 - AluJb SINE Alu -7 305 1 327 361 49 7 chr6 161533887 161534031 -20881211 + MLT1K LTR MaLR 14 163 -425 2096 149 35 16 chr6 161534036 161534404 -20880838 + THE1C LTR MaLR 1 375 0 1949 95 18 0 chr6 161534404 161534687 -20880555 + THE1C-int LTR MaLR 1 288 -1292 1976 152 110 33 chr6 161534714 161535142 -20880100 + LTR10A LTR ERV1 82 542 -67 4987 136 33 51 chr6 161535152 161535569 -20879673 + THE1C-int LTR MaLR 283 679 -901 216 0 0 0 chr6 161535569 161535593 -20879649 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4987 136 33 51 chr6 161535593 161536004 -20879238 + THE1C-int LTR MaLR 679 1096 -484 1539 159 110 65 chr6 161536004 161536432 -20878810 + LTR7 LTR ERV1 1 447 -3 3443 90 11 11 chr6 161536433 161536910 -20878332 + THE1C-int LTR MaLR 1098 1574 -6 2015 136 29 32 chr6 161536912 161537288 -20877954 + THE1C LTR MaLR 1 375 0 1008 284 39 47 chr6 161537296 161537658 -20877584 + MLT1K LTR MaLR 205 563 -25 22 0 0 0 chr6 161537855 161537877 -20877365 + AT_rich Low_complexity Low_complexity 1 22 0 186 337 89 77 chr6 161538561 161538650 -20876592 - L2 LINE L2 -575 2739 2646 2321 87 3 0 chr6 161538650 161538959 -20876283 + AluSx SINE Alu 1 310 -2 186 337 89 77 chr6 161538959 161539038 -20876204 - L2 LINE L2 -668 2646 2569 1075 245 74 74 chr6 161539068 161539477 -20875765 + MLT1C LTR MaLR 1 412 -55 2096 154 30 28 chr6 161539477 161539840 -20875402 + THE1B LTR MaLR 1 364 0 1075 245 74 74 chr6 161539840 161539891 -20875351 + MLT1C LTR MaLR 411 461 -6 1632 170 3 17 chr6 161540110 161540436 -20874806 + AluJb SINE Alu 1 312 0 371 274 116 12 chr6 161540550 161540714 -20874528 - MLT1K LTR MaLR -8 580 400 442 334 141 14 chr6 161540715 161541083 -20874159 - L2 LINE L2 -1088 2226 1812 2015 138 0 0 chr6 161541284 161541574 -20873668 + AluSx SINE Alu 3 292 -20 737 230 122 35 chr6 161541671 161541958 -20873284 - MLT1C LTR MaLR 0 467 156 1869 118 0 0 chr6 161541966 161542238 -20873004 - AluSx SINE Alu 0 312 41 474 211 143 8 chr6 161542238 161542371 -20872871 + MLT1C LTR MaLR 25 175 -215 2239 70 7 0 chr6 161542374 161542660 -20872582 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr6 161542762 161542783 -20872459 + (A)n Simple_repeat Simple_repeat 1 21 0 893 156 71 118 chr6 161542812 161543050 -20872192 + MLT1C LTR MaLR 164 467 0 1872 141 0 14 chr6 161543730 161544027 -20871215 + AluSx SINE Alu 1 293 -19 1514 181 101 34 chr6 161544506 161544832 -20870410 - MER7A DNA MER2_type 0 346 1 197 232 14 0 chr6 161544868 161544937 -20870305 + (TA)n Simple_repeat Simple_repeat 1 70 0 317 204 39 87 chr6 161544954 161545057 -20870185 - L1MC4 LINE L1 -1339 6703 6606 211 242 0 16 chr6 161545069 161545131 -20870111 + (TA)n Simple_repeat Simple_repeat 1 61 0 334 210 0 0 chr6 161545198 161545260 -20869982 - MER58C DNA MER1_type -36 179 118 1029 157 75 166 chr6 161545284 161545616 -20869626 + AluJb SINE Alu 1 302 0 1863 91 0 8 chr6 161545629 161545882 -20869360 + AluSx SINE Alu 1 251 -61 196 303 45 34 chr6 161545882 161545961 -20869281 - MIR SINE MIR -65 197 115 1723 137 0 0 chr6 161545963 161546212 -20869030 + AluJo SINE Alu 13 261 -51 281 296 71 74 chr6 161546334 161546645 -20868597 - L2 LINE L2 -5 3267 2958 320 216 80 104 chr6 161546800 161546925 -20868317 + L2 LINE L2 3151 3272 -41 712 254 161 5 chr6 161547870 161548087 -20867155 - MIR SINE MIR -10 252 2 296 266 160 0 chr6 161548305 161548399 -20866843 + L2 LINE L2 3159 3267 -5 280 333 59 7 chr6 161548442 161548577 -20866665 - L2 LINE L2 -12 3301 3160 262 121 17 17 chr6 161548902 161548960 -20866282 + (TA)n Simple_repeat Simple_repeat 1 58 0 2315 68 3 0 chr6 161549029 161549321 -20865921 + AluY SINE Alu 1 293 -18 182 273 156 84 chr6 161549424 161549578 -20865664 - MER5A DNA MER1_type -22 167 3 1846 147 0 16 chr6 161549764 161550070 -20865172 + AluSx SINE Alu 1 301 -11 201 314 0 0 chr6 161550368 161550419 -20864823 - MIR SINE MIR -124 84 34 236 140 40 0 chr6 161550432 161550482 -20864760 + GA-rich Low_complexity Low_complexity 3 54 0 919 211 0 0 chr6 161550485 161550775 -20864467 + AluJb SINE Alu 137 426 0 2413 62 0 34 chr6 161551048 161551370 -20863872 - AluY SINE Alu 0 311 1 257 170 38 0 chr6 161551781 161551834 -20863408 - MER103 DNA DNA -48 118 64 232 137 27 41 chr6 161552051 161552124 -20863118 + (TTA)n Simple_repeat Simple_repeat 1 72 0 2361 63 3 0 chr6 161552202 161552502 -20862740 - AluY SINE Alu -10 301 1 601 302 10 5 chr6 161552682 161552874 -20862368 - L1ME LINE L1 -303 5818 5626 1448 189 116 44 chr6 161553013 161553104 -20862138 - MLT1D LTR MaLR -8 481 398 2075 108 3 3 chr6 161553104 161553399 -20861843 + AluSx SINE Alu 1 295 -17 1448 189 116 44 chr6 161553399 161553757 -20861485 - MLT1D LTR MaLR -91 398 14 1211 303 64 87 chr6 161554823 161554837 -20860405 - L3 LINE CR1 -25 1552 1539 1369 187 134 58 chr6 161554837 161555271 -20859971 - MLT1C LTR MaLR 0 467 1 1211 303 64 87 chr6 161555271 161555613 -20859629 - L3 LINE CR1 -38 1539 1191 1941 127 0 3 chr6 161555613 161555926 -20859316 - AluSx SINE Alu 0 312 1 1211 303 64 87 chr6 161555926 161556444 -20858798 - L3 LINE CR1 -386 1191 696 409 191 78 9 chr6 161556533 161556648 -20858594 - L1ME3A LINE L1 -7 6163 6041 334 225 93 47 chr6 161556676 161556805 -20858437 - MIR SINE MIR -70 192 58 1946 96 0 66 chr6 161556814 161556920 -20858322 + AluSx SINE Alu 9 120 -192 2365 74 0 0 chr6 161556920 161557218 -20858024 - AluY SINE Alu -7 304 7 1946 96 0 66 chr6 161557218 161557414 -20857828 + AluSx SINE Alu 120 291 -21 245 151 0 0 chr6 161557414 161557467 -20857775 + L1MA1 LINE L1 6250 6302 0 342 322 54 122 chr6 161557576 161557911 -20857331 + L2 LINE L2 2954 3265 -7 301 239 65 87 chr6 161558020 161558158 -20857084 + MER5B DNA MER1_type 4 138 -40 1868 98 4 0 chr6 161558166 161558420 -20856822 + AluSx SINE Alu 1 255 -57 211 280 0 0 chr6 161558436 161558486 -20856756 + MER5A DNA MER1_type 140 189 0 2207 105 0 0 chr6 161559437 161559741 -20855501 - AluSx SINE Alu -8 304 1 2200 110 0 0 chr6 161560323 161560633 -20854609 + AluSx SINE Alu 3 312 0 967 254 33 18 chr6 161560663 161560938 -20854304 + MLT1C LTR MaLR 187 465 -2 204 40 0 0 chr6 161561334 161561359 -20853883 + (T)n Simple_repeat Simple_repeat 1 25 0 198 60 40 40 chr6 161561837 161561887 -20853355 + (TTTTTA)n Simple_repeat Simple_repeat 3 52 0 614 146 9 0 chr6 161561947 161562057 -20853185 + CT-rich Low_complexity Low_complexity 2 112 0 794 147 49 21 chr6 161562066 161562209 -20853033 - AluJb SINE Alu -1 311 165 189 257 27 54 chr6 161562234 161562308 -20852934 - L2 LINE L2 -307 2965 2894 39 22 0 0 chr6 161563050 161563096 -20852146 + AT_rich Low_complexity Low_complexity 1 46 0 1855 146 10 7 chr6 161563426 161563735 -20851507 + AluJb SINE Alu 1 310 -2 2054 101 13 10 chr6 161563833 161564139 -20851103 - AluSx SINE Alu -5 307 1 286 236 25 85 chr6 161564148 161564347 -20850895 + L1ME LINE L1 5634 5820 -301 375 259 24 0 chr6 161564403 161564488 -20850754 + L2 LINE L2 3226 3312 -1 283 138 121 0 chr6 161564673 161564731 -20850511 - MER53 DNA DNA -124 65 1 1775 146 3 7 chr6 161564792 161565080 -20850162 - AluJb SINE Alu -25 287 1 288 212 165 47 chr6 161565178 161565348 -20849894 - L1ME4a LINE L1 -52 6069 5880 2102 122 0 6 chr6 161565754 161566065 -20849177 - AluSx SINE Alu -3 309 1 223 234 0 0 chr6 161566093 161566140 -20849102 - MIR SINE MIR -9 253 207 856 149 0 15 chr6 161566314 161566448 -20848794 - FLAM_C SINE Alu -1 132 1 458 273 98 10 chr6 161566451 161566645 -20848597 - MIR SINE MIR -21 241 31 247 25 50 0 chr6 161566647 161566687 -20848555 + (GA)n Simple_repeat Simple_repeat 1 42 0 1954 109 28 7 chr6 161569009 161569293 -20845949 + AluSx SINE Alu 6 295 -17 527 229 167 29 chr6 161569302 161569577 -20845665 - L1MC5 LINE L1 -48 7913 7601 1848 122 39 138 chr6 161569652 161569776 -20845466 - L1MC3 LINE L1 -959 6826 6691 1553 143 40 4 chr6 161569776 161570055 -20845187 + AluSx SINE Alu 24 311 0 1848 122 39 138 chr6 161570055 161570370 -20844872 - L1MC3 LINE L1 -1094 6691 6429 1140 176 14 0 chr6 161570377 161570587 -20844655 - AluJo SINE Alu -14 298 86 1939 117 7 20 chr6 161570679 161570979 -20844263 - AluSq SINE Alu -9 304 9 647 269 52 21 chr6 161571213 161571406 -20843836 - LTR67 LTR ERVL -336 221 23 2323 99 0 0 chr6 161571429 161571741 -20843501 + AluSx SINE Alu 1 312 0 26 30 0 0 chr6 161571996 161572029 -20843213 + AT_rich Low_complexity Low_complexity 1 33 0 2230 100 0 0 chr6 161572080 161572380 -20842862 + AluY SINE Alu 1 300 -11 1277 270 40 67 chr6 161572445 161572502 -20842740 - L1MC4a LINE L1 -1800 6008 5951 2298 88 0 0 chr6 161572502 161572799 -20842443 + AluSc SINE Alu 1 297 -12 1277 270 40 67 chr6 161572799 161573361 -20841881 - L1MC4a LINE L1 -1857 5951 5411 2071 98 0 3 chr6 161573361 161573673 -20841569 + AluSx SINE Alu 1 311 0 1277 270 40 67 chr6 161573673 161573825 -20841417 - L1MC4a LINE L1 -2397 5411 5256 223 339 152 0 chr6 161573827 161574049 -20841193 - L2 LINE L2 -322 2991 2729 1587 246 140 66 chr6 161574060 161574749 -20840493 - L2 LINE L2 -862 2452 1693 2123 114 0 29 chr6 161574749 161575065 -20840177 - AluSx SINE Alu -5 307 1 1587 246 140 66 chr6 161575065 161575180 -20840062 - L2 LINE L2 -1621 1693 1588 6644 86 1 1 chr6 161575491 161576431 -20838811 + L1PB1 LINE L1 5210 6149 -2 2858 146 38 11 chr6 161576470 161576992 -20838250 - L1MB4 LINE L1 -13 6167 5632 235 185 49 111 chr6 161578080 161578161 -20837081 - AluJ/FRAM SINE Alu -6 296 221 272 179 63 0 chr6 161578247 161578342 -20836900 + CT-rich Low_complexity Low_complexity 3 103 0 583 155 70 47 chr6 161578344 161578473 -20836769 - FLAM_A SINE Alu 0 133 2 741 167 24 12 chr6 161578476 161578644 -20836598 + CT-rich Low_complexity Low_complexity 1 170 0 313 98 0 0 chr6 161578644 161578685 -20836557 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 636 185 22 44 chr6 161578685 161578889 -20836353 - FLAM_A SINE Alu 0 202 2 260 149 0 21 chr6 161578998 161579045 -20836197 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 1053 97 0 0 chr6 161579045 161579190 -20836052 - AluSg/x SINE Alu 0 310 166 2278 92 0 16 chr6 161579296 161579610 -20835632 + AluSx SINE Alu 1 309 -3 1187 48 0 0 chr6 161579969 161580114 -20835128 + L1PA3 LINE L1 6011 6155 0 802 153 0 0 chr6 161580265 161580383 -20834859 + FLAM_C SINE Alu 1 118 -15 275 243 72 0 chr6 161580602 161580713 -20834529 - L1ME4a LINE L1 -6 6115 5997 742 164 0 0 chr6 161580729 161580839 -20834403 + FLAM_A SINE Alu 1 110 -32 682 233 144 30 chr6 161581123 161581293 -20833949 + MER46C DNA MER2_type 37 186 -152 2193 100 0 16 chr6 161581293 161581602 -20833640 - AluSx SINE Alu -8 304 1 682 233 144 30 chr6 161581602 161581702 -20833540 + MER46C DNA MER2_type 186 338 0 1553 97 0 18 chr6 161582007 161582234 -20833008 - AluSg/x SINE Alu -7 305 83 259 271 14 0 chr6 161582269 161582339 -20832903 - MLT1K LTR MaLR -12 576 506 299 269 93 60 chr6 161582376 161582558 -20832684 - MLT1K LTR MaLR -173 415 228 21 0 0 0 chr6 161582735 161582756 -20832486 + AT_rich Low_complexity Low_complexity 1 21 0 1782 147 0 0 chr6 161583299 161583572 -20831670 + AluSx SINE Alu 2 274 -38 234 0 0 0 chr6 161583581 161583607 -20831635 + (TAA)n Simple_repeat Simple_repeat 2 27 0 476 307 57 21 chr6 161584138 161584330 -20830912 - MIR SINE MIR -40 222 24 727 172 0 0 chr6 161584332 161584454 -20830788 + FLAM_A SINE Alu 4 125 -8 2109 108 0 3 chr6 161584600 161584896 -20830346 + AluSx SINE Alu 3 297 -15 1024 269 127 50 chr6 161585052 161585516 -20829726 + MLT1J LTR MaLR 6 505 -6 828 107 61 0 chr6 161585800 161585923 -20829319 + AluJb SINE Alu 156 289 -23 294 73 0 0 chr6 161585923 161585964 -20829278 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 574 257 88 91 chr6 161586107 161586595 -20828647 - MLT1K LTR MaLR -6 582 26 1995 94 3 24 chr6 161586759 161587056 -20828186 - AluSx SINE Alu -13 299 9 1427 178 149 20 chr6 161587079 161587421 -20827821 - MLT1B LTR MaLR 0 390 5 2563 131 40 61 chr6 161587554 161588055 -20827187 - LTR54 LTR ERV1 0 510 19 2279 90 10 10 chr6 161588055 161588355 -20826887 - AluSx SINE Alu -12 300 1 2563 131 40 61 chr6 161588355 161588374 -20826868 - LTR54 LTR ERV1 -491 19 1 1434 175 27 27 chr6 161589074 161589337 -20825905 + AluJo SINE Alu 30 292 -20 282 257 65 102 chr6 161589345 161589590 -20825652 + L2 LINE L2 3077 3312 -1 3780 99 0 6 chr6 161589644 161590158 -20825084 + MER9 LTR ERVK 1 511 0 765 142 0 8 chr6 161590375 161590495 -20824747 - FLAM_A SINE Alu -14 119 1 2513 164 46 75 chr6 161590517 161590792 -20824450 + MER74A LTR ERVL 3 256 -302 2522 70 0 0 chr6 161590792 161591094 -20824148 + AluY SINE Alu 1 302 -9 2513 164 46 75 chr6 161591094 161591362 -20823880 + MER74A LTR ERVL 256 530 -28 2043 124 17 3 chr6 161591408 161591707 -20823535 + AluSx SINE Alu 1 303 -9 297 278 132 21 chr6 161591749 161591893 -20823349 - MLT1L LTR MaLR -18 597 438 2348 91 0 0 chr6 161592369 161592676 -20822566 - AluY SINE Alu -3 308 2 893 209 63 67 chr6 161593873 161594049 -20821193 + L1ME LINE L1 5321 5497 -667 1907 137 13 38 chr6 161594049 161594364 -20820878 + AluSx SINE Alu 1 307 -5 893 209 63 67 chr6 161594364 161594518 -20820724 + L1ME LINE L1 5497 5650 -514 338 191 16 0 chr6 161594534 161594597 -20820645 - MER2 DNA MER2_type 0 345 282 1686 172 77 9 chr6 161594597 161594922 -20820320 - MER7A DNA MER2_type 0 346 2 2058 130 7 7 chr6 161594998 161595291 -20819951 - AluSx SINE Alu -19 293 1 570 73 37 0 chr6 161595293 161595375 -20819867 - MER2 DNA MER2_type -139 206 122 1195 141 0 12 chr6 161595375 161595545 -20819697 + AluSq SINE Alu 1 168 -145 1560 128 0 13 chr6 161595545 161595771 -20819471 - AluSx SINE Alu -89 223 1 34 24 0 0 chr6 161595773 161595814 -20819428 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr6 161595825 161595855 -20819387 + AT_rich Low_complexity Low_complexity 1 30 0 2250 78 9 78 chr6 161595890 161596225 -20819017 - AluSx SINE Alu 0 312 1 2095 140 7 7 chr6 161596273 161596580 -20818662 - AluJb SINE Alu -5 307 1 1432 161 0 13 chr6 161596720 161596950 -20818292 - AluJb SINE Alu -22 290 64 182 37 37 0 chr6 161596958 161596985 -20818257 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 33 56 0 0 chr6 161597054 161597108 -20818134 + AT_rich Low_complexity Low_complexity 1 54 0 2120 114 18 0 chr6 161597109 161597390 -20817852 + AluSx SINE Alu 1 286 -26 2314 105 3 0 chr6 161597402 161597698 -20817544 + AluSx SINE Alu 3 299 -13 552 235 20 27 chr6 161597703 161597852 -20817390 - L1MC/D LINE L1 -2021 5787 5640 586 138 0 11 chr6 161598050 161598144 -20817098 - MLT1C LTR MaLR 0 467 375 197 308 33 33 chr6 161598551 161598642 -20816600 + L2 LINE L2 2971 3061 -211 21 36 0 0 chr6 161598884 161598912 -20816330 + AT_rich Low_complexity Low_complexity 1 28 0 2142 125 3 0 chr6 161598958 161599255 -20815987 + AluSx SINE Alu 1 298 -14 2084 136 0 7 chr6 161599810 161600112 -20815130 + AluJb SINE Alu 1 300 -12 26 50 0 0 chr6 161600123 161600163 -20815079 + AT_rich Low_complexity Low_complexity 1 40 0 1935 169 0 0 chr6 161600269 161600564 -20814678 + AluSx SINE Alu 3 297 -15 3499 159 18 142 chr6 161600601 161600814 -20814428 + L1 LINE L1 3306 3544 -2602 1560 166 10 70 chr6 161600814 161601127 -20814115 + AluJb SINE Alu 1 294 -18 3499 159 18 142 chr6 161601127 161601947 -20813295 + L1 LINE L1 3544 4211 -1935 1022 170 46 41 chr6 161601947 161602165 -20813077 + AluJo SINE Alu 82 300 -12 408 88 0 0 chr6 161602264 161602321 -20812921 + (TA)n Simple_repeat Simple_repeat 2 58 0 3108 112 29 35 chr6 161602327 161602845 -20812397 + L1MA9 LINE L1 5787 6301 -11 739 175 0 36 chr6 161602849 161602986 -20812256 - FLAM_C SINE Alu 0 133 2 1358 204 19 38 chr6 161603006 161603324 -20811918 + AluJo SINE Alu 1 312 0 1207 206 22 84 chr6 161603975 161604116 -20811126 + AluJb SINE Alu 1 149 -153 750 23 0 0 chr6 161604116 161604204 -20811038 + (TA)n Simple_repeat Simple_repeat 2 89 0 1207 206 22 84 chr6 161604204 161604562 -20810680 + AluJb SINE Alu 149 302 0 262 94 0 38 chr6 161604564 161604617 -20810625 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 605 203 0 0 chr6 161655916 161656034 -20759208 - L1M4 LINE L1 -6420 122 5 2211 107 0 38 chr6 161656047 161656364 -20758878 - AluSx SINE Alu -3 309 5 636 146 0 0 chr6 161656480 161656576 -20758666 - MLT1A2 LTR MaLR 0 374 279 259 224 0 17 chr6 161656569 161656627 -20758615 + MLT1A2 LTR MaLR 230 286 -88 * 421 332 39 24 chr6 161656871 161657079 -20758163 + MIR SINE MIR 13 223 -39 211 27 27 27 chr6 161657227 161657264 -20757978 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2100 94 18 11 chr6 161657266 161657543 -20757699 - AluSx SINE Alu -29 283 5 1426 206 13 68 chr6 161658512 161658906 -20756336 + MLT1A2 LTR MaLR 1 372 -2 767 197 0 0 chr6 161659020 161659152 -20756090 + FLAM_A SINE Alu 2 133 0 2142 103 16 22 chr6 161659250 161659561 -20755681 - AluSq SINE Alu 0 313 5 296 293 89 52 chr6 161659662 161659853 -20755389 - MIR SINE MIR -13 249 52 359 260 101 82 chr6 161659926 161659985 -20755257 - MIR SINE MIR -48 214 158 2196 117 0 7 chr6 161659985 161660283 -20754959 - AluSg SINE Alu -14 296 1 359 260 101 82 chr6 161660283 161660431 -20754811 - MIR SINE MIR -104 158 3 2172 128 3 0 chr6 161660535 161660839 -20754403 - AluSx SINE Alu -7 305 1 2325 115 0 0 chr6 161661982 161662294 -20752948 + AluSx SINE Alu 1 312 0 5830 173 39 14 chr6 161662298 161662743 -20752499 + L1MA4A LINE L1 4119 4551 -1595 2026 116 23 17 chr6 161662743 161663045 -20752197 + AluSq SINE Alu 1 304 -9 5830 173 39 14 chr6 161663045 161663758 -20751484 + L1MA4A LINE L1 4551 5310 -836 2337 89 7 0 chr6 161663758 161664051 -20751191 + AluSq SINE Alu 5 299 -14 5830 173 39 14 chr6 161664051 161664073 -20751169 + L1MA4A LINE L1 5310 5330 -816 1552 165 0 4 chr6 161664074 161664311 -20750931 + AluJb SINE Alu 1 236 -76 450 176 0 0 chr6 161664412 161664486 -20750756 + AluJb SINE Alu 221 294 -18 369 127 79 0 chr6 161664486 161664549 -20750693 + L1MA4A LINE L1 5322 5389 -914 462 205 0 0 chr6 161664549 161664627 -20750615 - AluJ/FLAM SINE Alu -233 79 2 1247 99 6 0 chr6 161664652 161664813 -20750429 - AluSq SINE Alu -8 305 144 4925 122 5 32 chr6 161664813 161664884 -20750358 + L1MA4A LINE L1 5405 5476 -827 2239 190 64 113 chr6 161664884 161665122 -20750120 + LTR8A LTR ERV1 1 249 -478 2536 47 0 13 chr6 161665122 161665420 -20749822 + AluY SINE Alu 1 294 -17 2239 190 64 113 chr6 161665420 161665945 -20749297 + LTR8A LTR ERV1 249 727 0 4925 122 5 32 chr6 161665945 161666312 -20748930 + L1MA4A LINE L1 5476 5851 -452 2163 109 0 44 chr6 161666312 161666633 -20748609 + AluSx SINE Alu 1 307 -5 327 49 0 0 chr6 161666633 161666674 -20748568 + (TA)n Simple_repeat Simple_repeat 1 41 0 4925 122 5 32 chr6 161666674 161667037 -20748205 + L1MA4A LINE L1 5849 6186 -117 673 92 78 43 chr6 161667049 161667190 -20748052 + L1MA4A LINE L1 6158 6303 0 2086 138 3 0 chr6 161667225 161667523 -20747719 + AluJb SINE Alu 1 299 -13 2105 128 7 0 chr6 161667854 161668151 -20747091 - AluSx SINE Alu -13 299 1 329 109 0 0 chr6 161669432 161669478 -20745764 + Alu SINE Alu 245 290 -12 596 161 7 80 chr6 161669486 161669623 -20745619 + FLAM_C SINE Alu 9 135 -8 366 145 0 16 chr6 161669628 161669690 -20745552 + MER31A LTR ERV1 350 410 -75 2301 113 0 0 chr6 161669774 161670066 -20745176 - AluSx SINE Alu -20 292 1 183 42 0 0 chr6 161670135 161670159 -20745083 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1900 146 4 0 chr6 161670163 161670437 -20744805 - AluSx SINE Alu -37 275 1 2054 158 21 8 chr6 161670444 161670824 -20744418 - L1MB3 LINE L1 0 6183 5799 238 273 131 25 chr6 161671506 161671704 -20743538 + LTR48 LTR ERV1 529 747 -40 2110 113 3 3 chr6 161671808 161672131 -20743111 + AluSx SINE Alu 1 323 0 7871 106 36 6 chr6 161672514 161672529 -20742713 + HSMAR1 DNA Mariner 148 161 -1126 660 137 0 69 chr6 161672529 161672660 -20742582 - L1MB2 LINE L1 0 6171 6050 7871 106 36 6 chr6 161672660 161672687 -20742555 + HSMAR1 DNA Mariner 161 186 -1101 2055 112 3 39 chr6 161672687 161672992 -20742250 + AluY SINE Alu 1 294 -17 7871 106 36 6 chr6 161672992 161674047 -20741195 + HSMAR1 DNA Mariner 186 1279 -8 667 186 51 134 chr6 161674049 161674131 -20741111 - L1M3 LINE L1 -625 5546 5459 2639 45 0 22 chr6 161674131 161674445 -20740797 + AluY SINE Alu 1 307 -4 667 186 51 134 chr6 161674445 161674695 -20740547 - L1M3 LINE L1 -712 5459 5190 2161 133 0 0 chr6 161674695 161674997 -20740245 - AluSx SINE Alu -10 302 1 667 186 51 134 chr6 161674997 161675305 -20739937 - L1M3 LINE L1 -981 5190 4858 414 274 120 0 chr6 161675305 161675422 -20739820 + FLAM_A SINE Alu 1 131 -11 667 186 51 134 chr6 161675422 161675711 -20739531 - L1M3 LINE L1 -1313 4858 4547 2395 102 3 0 chr6 161675711 161676015 -20739227 - AluSq SINE Alu -8 305 1 667 186 51 134 chr6 161676015 161676407 -20738835 - L1M3 LINE L1 -1624 4547 4154 186 43 0 0 chr6 161677081 161677104 -20738138 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 847 157 6 6 chr6 161677104 161677270 -20737972 + CT-rich Low_complexity Low_complexity 3 168 0 2092 129 7 3 chr6 161677272 161677566 -20737676 - AluSx SINE Alu -17 295 1 2328 112 3 6 chr6 161678464 161678778 -20736464 - AluSq SINE Alu 0 313 1 1124 240 87 12 chr6 161679416 161679737 -20735505 - MLT1F1 LTR MaLR -59 508 164 425 120 173 0 chr6 161679882 161679957 -20735285 + AluS SINE Alu 2 89 -224 1129 160 0 49 chr6 161680545 161680770 -20734472 - AluJb SINE Alu 0 312 99 4330 108 15 2 chr6 161680772 161681390 -20733852 + MER41B LTR ERV1 1 626 -9 573 120 11 33 chr6 161681398 161681490 -20733752 - FLAM_A SINE Alu -43 99 10 1657 165 16 30 chr6 161682143 161682275 -20732967 + AluJb SINE Alu 1 133 -179 2125 53 8 0 chr6 161682275 161682521 -20732721 + AluY SINE Alu 51 298 -13 1657 165 16 30 chr6 161682521 161682691 -20732551 + AluJb SINE Alu 133 299 -13 1772 106 0 4 chr6 161682814 161683060 -20732182 + AluSg/x SINE Alu 67 311 -1 1802 183 0 7 chr6 161683079 161683385 -20731857 + AluJo SINE Alu 1 304 -8 685 98 0 0 chr6 161683471 161683563 -20731679 + FLAM SINE Alu 39 130 -13 2269 95 0 17 chr6 161683826 161684122 -20731120 - AluSq SINE Alu -22 291 1 4685 170 50 54 chr6 161684593 161685247 -20729995 - L1MD1 LINE L1 0 6242 5587 2111 120 14 0 chr6 161685247 161685539 -20729703 + AluSx SINE Alu 1 296 -16 4685 170 50 54 chr6 161685539 161686069 -20729173 - L1MD1 LINE L1 -655 5587 5056 2377 71 0 0 chr6 161686069 161686364 -20728878 - AluY SINE Alu -11 300 6 4685 170 50 54 chr6 161686364 161686560 -20728682 - L1MD1 LINE L1 -1186 5056 4861 261 0 0 0 chr6 161686574 161686603 -20728639 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2471 81 0 13 chr6 161686805 161687114 -20728128 - AluSx SINE Alu -7 305 1 23 54 0 0 chr6 161687278 161687315 -20727927 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 161688283 161688306 -20726936 + AT_rich Low_complexity Low_complexity 1 23 0 219 224 0 0 chr6 161688818 161688867 -20726375 + L2 LINE L2 3264 3312 -1 398 28 56 28 chr6 161688871 161688943 -20726299 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 1790 124 102 14 chr6 161689044 161689327 -20725915 - AluJo SINE Alu -3 309 2 2303 125 0 0 chr6 161689631 161689943 -20725299 - AluSx SINE Alu 0 312 1 594 249 89 38 chr6 161690067 161690280 -20724962 + MIR SINE MIR 14 237 -25 21 0 0 0 chr6 161690416 161690437 -20724805 + AT_rich Low_complexity Low_complexity 1 21 0 899 150 0 0 chr6 161690446 161690579 -20724663 + FLAM_C SINE Alu 1 133 0 1336 152 17 38 chr6 161690771 161691008 -20724234 - AluJo SINE Alu 0 312 81 21 82 0 0 chr6 161692317 161692366 -20722876 + GC_rich Low_complexity Low_complexity 1 49 0 2322 79 0 0 chr6 161695971 161696279 -20718963 + AluY SINE Alu 1 308 0 1436 92 0 5 chr6 161697089 161697274 -20717968 - AluSg SINE Alu -77 233 50 895 73 0 37 chr6 161697275 161697411 -20717831 + AluYb8 SINE Alu 184 314 -4 23 33 0 0 chr6 161697467 161697497 -20717745 + AT_rich Low_complexity Low_complexity 1 30 0 395 273 104 56 chr6 161697815 161697865 -20717377 - L1MC/D LINE L1 -2174 5634 5588 2360 100 0 3 chr6 161697865 161698176 -20717066 + AluSg SINE Alu 1 310 0 395 273 104 56 chr6 161698176 161698374 -20716868 - L1MC/D LINE L1 -2220 5588 5374 1444 177 3 93 chr6 161698487 161698821 -20716421 - AluSq SINE Alu -9 304 1 228 298 0 43 chr6 161698985 161699079 -20716163 + L2 LINE L2 3217 3306 -7 765 107 15 53 chr6 161699079 161699210 -20716032 + FLAM_C SINE Alu 2 127 -16 2445 76 3 0 chr6 161699558 161699849 -20715393 - AluSg SINE Alu -18 292 1 749 186 0 0 chr6 161700160 161700289 -20714953 + FLAM_A SINE Alu 6 134 -8 272 292 52 21 chr6 161700315 161700411 -20714831 - MER5B DNA MER1_type -76 102 4 1224 219 11 22 chr6 161701145 161701414 -20713828 - AluJo SINE Alu -23 289 24 433 198 12 45 chr6 161701525 161701862 -20713380 + CT-rich Low_complexity Low_complexity 1 325 0 800 143 0 0 chr6 161701988 161702100 -20713142 - AluSq/x SINE Alu -200 112 1 679 151 0 72 chr6 161702214 161702353 -20712889 + FLAM_C SINE Alu 5 133 0 675 161 22 66 chr6 161702993 161703130 -20712112 - FLAM_C SINE Alu -2 131 1 1960 122 31 14 chr6 161703326 161703613 -20711629 - AluSx SINE Alu -20 292 1 1961 128 32 0 chr6 161703964 161704245 -20710997 - AluSg SINE Alu -20 290 1 2333 71 17 0 chr6 161704771 161705065 -20710177 - AluSp SINE Alu -14 299 1 1609 180 60 0 chr6 161705120 161705403 -20709839 + AluJb SINE Alu 1 300 -12 397 258 53 23 chr6 161705794 161705926 -20709316 + MER103 DNA DNA 13 148 -18 216 167 0 74 chr6 161706205 161706240 -20709002 + (TA)n Simple_repeat Simple_repeat 1 37 -13 180 0 0 0 chr6 161706240 161706260 -20708982 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2178 110 3 0 chr6 161706263 161706553 -20708689 - AluSx SINE Alu -21 291 1 216 167 0 74 chr6 161706553 161706567 -20708675 + (TA)n Simple_repeat Simple_repeat 39 50 0 2273 103 3 60 chr6 161706666 161706901 -20708341 - L1PA16 LINE L1 -15 6151 5943 2255 117 7 0 chr6 161706901 161707201 -20708041 - AluSx SINE Alu -10 302 1 2273 103 3 60 chr6 161707201 161707334 -20707908 - L1PA16 LINE L1 -223 5943 5804 1803 142 66 7 chr6 161708243 161708531 -20706711 - AluSx SINE Alu -7 305 1 207 0 0 0 chr6 161708531 161708554 -20706688 + (TG)n Simple_repeat Simple_repeat 2 24 0 414 173 18 9 chr6 161708555 161708665 -20706577 + (TA)n Simple_repeat Simple_repeat 1 111 0 2185 106 0 3 chr6 161708667 161708950 -20706292 - AluSx SINE Alu -30 282 1 293 143 0 0 chr6 161709014 161709070 -20706172 + L1MC4 LINE L1 6648 6703 -1339 348 161 0 0 chr6 161709088 161709150 -20706092 + (CA)n Simple_repeat Simple_repeat 2 63 0 1961 147 7 3 chr6 161709175 161709481 -20705761 - AluSx SINE Alu -5 307 1 1830 102 8 4 chr6 161710319 161710565 -20704677 + AluSx SINE Alu 5 251 -61 1839 130 58 17 chr6 161710710 161711003 -20704239 + AluSx SINE Alu 1 305 -7 1743 128 23 52 chr6 161711013 161711319 -20703923 + AluSx SINE Alu 1 297 -15 500 101 0 0 chr6 161711330 161711448 -20703794 - AluSp/q SINE Alu 0 332 215 1822 109 46 18 chr6 161711576 161711859 -20703383 - AluSp SINE Alu -22 291 1 1797 167 14 0 chr6 161712649 161712937 -20702305 - AluJo SINE Alu -18 294 3 2269 101 23 0 chr6 161713177 161713483 -20701759 - AluSq SINE Alu 0 313 1 202 207 24 61 chr6 161713483 161713565 -20701677 + L2 LINE L2 2178 2256 -1058 180 0 0 0 chr6 161713973 161713993 -20701249 + (A)n Simple_repeat Simple_repeat 1 20 0 2312 105 0 0 chr6 161713997 161714293 -20700949 + AluSx SINE Alu 5 300 -12 2187 105 7 3 chr6 161714474 161714770 -20700472 + AluSx SINE Alu 1 297 -15 471 115 0 58 chr6 161714827 161714914 -20700328 - L1MB8 LINE L1 0 6178 6097 234 276 75 67 chr6 161715722 161715856 -20699386 + L3 LINE CR1 607 741 -836 294 261 68 0 chr6 161716162 161716250 -20698992 + L1ME LINE L1 5569 5662 -459 1057 58 14 0 chr6 161716506 161716645 -20698597 + AluY SINE Alu 167 307 -4 2257 98 3 16 chr6 161717736 161718042 -20697200 + AluSp SINE Alu 2 303 -10 1993 139 0 22 chr6 161718232 161718548 -20696694 - AluSx SINE Alu -3 309 1 306 0 0 0 chr6 161718550 161718584 -20696658 + (T)n Simple_repeat Simple_repeat 1 34 0 27 29 0 0 chr6 161718897 161718931 -20696311 + AT_rich Low_complexity Low_complexity 1 34 0 4007 166 34 24 chr6 161719313 161719660 -20695582 - L1MB8 LINE L1 0 6178 5836 2266 93 7 3 chr6 161719660 161719962 -20695280 - AluSp SINE Alu -10 303 1 4007 166 34 24 chr6 161719962 161720399 -20694843 - L1MB8 LINE L1 -342 5836 5386 530 201 67 184 chr6 161720754 161720930 -20694312 - L1MC4 LINE L1 -97 7945 7750 1846 153 7 13 chr6 161720930 161721230 -20694012 - AluJb SINE Alu -14 298 1 530 201 67 184 chr6 161721230 161721259 -20693983 - L1MC4 LINE L1 -292 7750 7719 2362 95 0 3 chr6 161721259 161721564 -20693678 - AluSx SINE Alu -8 304 1 530 201 67 184 chr6 161721564 161721663 -20693579 - L1MC4 LINE L1 -323 7719 7610 1815 171 3 16 chr6 161721663 161721973 -20693269 + AluJo SINE Alu 1 306 -6 530 201 67 184 chr6 161721973 161722098 -20693144 - L1MC4 LINE L1 -432 7610 7472 414 0 0 0 chr6 161722098 161722144 -20693098 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 1883 113 14 55 chr6 161722144 161722436 -20692806 - AluSx SINE Alu -32 280 1 530 201 67 184 chr6 161722436 161722528 -20692714 - L1MC4 LINE L1 -569 7473 7489 2273 81 28 0 chr6 161722528 161722811 -20692431 - AluY SINE Alu -20 291 1 530 201 67 184 chr6 161722811 161722855 -20692387 - L1MC4 LINE L1 -552 7490 7442 251 250 132 29 chr6 161723034 161723170 -20692072 - L1MC4 LINE L1 -819 7223 7074 2399 84 0 3 chr6 161723356 161723654 -20691588 + AluSg SINE Alu 5 301 -9 1856 138 3 26 chr6 161723678 161723983 -20691259 - AluJb SINE Alu -14 298 1 2139 113 0 3 chr6 161724427 161724718 -20690524 + AluJb SINE Alu 3 292 -20 267 54 0 0 chr6 161727549 161727586 -20687656 + (TG)n Simple_repeat Simple_repeat 2 38 0 2198 125 0 0 chr6 161727808 161728120 -20687122 - AluSx SINE Alu 0 312 1 2588 45 0 0 chr6 161728278 161728570 -20686672 - AluY SINE Alu -18 293 2 875 145 6 36 chr6 161729303 161729469 -20685773 + FRAM SINE Alu 1 161 -5 23 33 0 0 chr6 161729491 161729521 -20685721 + AT_rich Low_complexity Low_complexity 1 30 0 436 303 62 26 chr6 161729601 161729905 -20685337 - L1MC4 LINE L1 -1827 5981 5667 489 163 141 0 chr6 161730119 161730211 -20685031 - U6 snRNA snRNA 0 107 3 854 193 35 6 chr6 161730239 161730410 -20684832 - FRAM SINE Alu -1 175 1 1453 158 40 50 chr6 161731294 161731592 -20683650 - AluJo SINE Alu -7 305 11 2078 93 0 81 chr6 161731692 161732014 -20683228 - AluSx SINE Alu -16 296 1 208 324 14 0 chr6 161732805 161732876 -20682366 - L2 LINE L2 -668 2646 2575 204 209 60 15 chr6 161733181 161733248 -20681994 - MIR SINE MIR -96 166 97 481 314 76 0 chr6 161733629 161733814 -20681428 - L1ME3 LINE L1 -17 6145 5947 2090 138 0 16 chr6 161733948 161734260 -20680982 + AluJb SINE Alu 1 307 -5 315 0 0 0 chr6 161734989 161735024 -20680218 + (TG)n Simple_repeat Simple_repeat 2 36 0 2016 117 7 7 chr6 161735484 161735765 -20679477 - AluSq SINE Alu -15 298 18 2529 68 0 3 chr6 161736533 161736843 -20678399 - AluY SINE Alu -2 309 1 181 56 28 28 chr6 161736843 161736879 -20678363 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1736 180 0 3 chr6 161736881 161737165 -20678077 - AluJb SINE Alu -29 283 1 5267 47 3 0 chr6 161737197 161737830 -20677412 + L1PA7 LINE L1 5520 6154 0 1868 139 27 17 chr6 161737837 161738138 -20677104 + AluSx SINE Alu 1 304 -8 2406 82 0 13 chr6 161740210 161740514 -20674728 - AluSp SINE Alu -13 300 1 494 223 11 11 chr6 161740765 161740859 -20674383 - MER5B DNA MER1_type -18 160 67 253 243 87 58 chr6 161740898 161741001 -20674241 - MIR SINE MIR -87 121 16 401 185 0 81 chr6 161742032 161742118 -20673124 + MER2 DNA MER2_type 1 78 -161 304 219 16 0 chr6 161742118 161742182 -20673060 - MER2 DNA MER2_type 0 345 281 * 317 237 11 54 chr6 161742156 161742249 -20672993 - MER8 DNA MER2_type -60 179 91 2212 103 0 0 chr6 161743575 161743876 -20671366 - AluSc SINE Alu -8 301 1 257 264 136 9 chr6 161744538 161744648 -20670594 - MER103 DNA DNA -41 125 2 1798 128 0 0 chr6 161746099 161746357 -20668885 + AluSx SINE Alu 1 258 -54 2292 81 7 0 chr6 161746899 161747195 -20668047 + AluSg SINE Alu 1 298 -12 2143 111 0 13 chr6 161748116 161748432 -20666810 + AluSx SINE Alu 1 312 0 618 111 33 0 chr6 161748448 161748538 -20666704 - HY4 scRNA scRNA 0 93 1 208 200 77 46 chr6 161748547 161748612 -20666630 - MIR SINE MIR -109 153 87 372 267 33 33 chr6 161748705 161748825 -20666417 + L3 LINE CR1 590 709 -868 216 158 0 0 chr6 161749123 161749161 -20666081 + CT-rich Low_complexity Low_complexity 4 41 0 231 214 60 36 chr6 161749302 161749386 -20665856 - L1ME LINE L1 -364 5798 5713 805 173 0 0 chr6 161749400 161749533 -20665709 - FLAM_C SINE Alu 0 133 1 2080 100 20 3 chr6 161751613 161751912 -20663330 - AluSg SINE Alu -4 306 3 770 137 16 8 chr6 161751937 161752061 -20663181 - FLAM_A SINE Alu -8 125 1 2056 110 20 0 chr6 161752518 161752819 -20662423 + AluSq SINE Alu 1 307 -6 288 279 79 84 chr6 161753538 161753753 -20661489 + MIR SINE MIR 49 262 0 2162 116 3 0 chr6 161753812 161754123 -20661119 + AluSx SINE Alu 1 312 0 1750 112 46 46 chr6 161754171 161754476 -20660766 - AluSg SINE Alu -5 305 1 21 0 0 0 chr6 161754774 161754795 -20660447 + AT_rich Low_complexity Low_complexity 1 21 0 304 266 83 28 chr6 161756769 161756878 -20658364 - MIR SINE MIR 0 262 148 1768 107 28 79 chr6 161757462 161757779 -20657463 - AluSx SINE Alu -11 301 1 2018 147 0 0 chr6 161757805 161758117 -20657125 - AluSx SINE Alu 0 312 1 2195 106 0 0 chr6 161758477 161758779 -20656463 - AluSx SINE Alu -10 302 1 2170 87 3 7 chr6 161759687 161759996 -20655246 + AluSq SINE Alu 3 310 -3 511 155 155 0 chr6 161760067 161760170 -20655072 + AluJb SINE Alu 2 120 -192 1259 226 7 10 chr6 161760581 161760873 -20654369 - AluJo SINE Alu -21 291 1 1737 143 7 23 chr6 161761795 161762096 -20653146 + AluJo SINE Alu 3 298 -14 2211 82 0 7 chr6 161762114 161762419 -20652823 + AluY SINE Alu 1 303 -8 343 238 36 0 chr6 161762490 161762574 -20652668 + L2 LINE L2 3226 3312 -1 1916 118 20 14 chr6 161763634 161763931 -20651311 - AluSx SINE Alu -13 299 1 2184 98 3 0 chr6 161764378 161764674 -20650568 + AluSg SINE Alu 2 298 -12 1934 157 24 41 chr6 161764774 161765143 -20650099 - MLT1A1 LTR MaLR 0 365 3 2721 96 3 5 chr6 161765299 161765675 -20649567 - THE1C LTR MaLR 0 375 1 2099 129 22 55 chr6 161766000 161766246 -20648996 - MLT1B LTR MaLR 0 390 161 2155 81 0 24 chr6 161766246 161766542 -20648700 - AluSx SINE Alu -23 289 1 2099 129 22 55 chr6 161766542 161766698 -20648544 - MLT1B LTR MaLR -229 161 1 751 229 22 17 chr6 161766860 161767039 -20648203 - L3 LINE CR1 -199 1378 1199 1156 194 133 36 chr6 161767624 161767954 -20647288 + MLT1A1 LTR MaLR 4 365 0 351 263 33 86 chr6 161768142 161768258 -20646984 - HAL1 LINE L1 -1072 1435 1327 1704 158 20 26 chr6 161768258 161768561 -20646681 + AluJo SINE Alu 1 301 -11 351 263 33 86 chr6 161768561 161768596 -20646646 - HAL1 LINE L1 -1180 1327 1292 451 15 15 31 chr6 161769044 161769109 -20646133 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 315 132 0 0 chr6 161769110 161769178 -20646064 + (TA)n Simple_repeat Simple_repeat 2 69 0 572 128 0 0 chr6 161769271 161769365 -20645877 + 7SK RNA RNA 32 125 -68 496 123 0 0 chr6 161769401 161769474 -20645768 + 7SK RNA RNA 121 193 0 938 109 0 0 chr6 161769886 161770024 -20645218 - FLAM_C SINE Alu -5 138 1 231 299 19 71 chr6 161770290 161770444 -20644798 + L2 LINE L2 2641 2786 -528 3081 189 38 31 chr6 161770461 161770526 -20644716 - L1MB8 LINE L1 -9 6169 6105 1769 254 54 91 chr6 161770526 161770579 -20644663 - L1MD2 LINE L1 -239 6120 6067 2298 109 0 0 chr6 161770579 161770891 -20644351 - AluSx SINE Alu 0 312 1 1769 254 54 91 chr6 161770891 161771508 -20643734 - L1MD2 LINE L1 -292 6067 5485 2231 89 7 3 chr6 161771508 161771812 -20643430 - AluSg SINE Alu -5 305 1 1769 254 54 91 chr6 161771812 161771991 -20643251 - L1MD2 LINE L1 -874 5485 5301 2248 80 0 10 chr6 161772873 161773172 -20642070 + AluSx SINE Alu 1 296 -16 246 62 0 0 chr6 161776094 161776126 -20639116 + (A)n Simple_repeat Simple_repeat 1 32 0 2122 103 0 0 chr6 161776407 161776719 -20638523 - AluSc SINE Alu 0 312 1 2485 34 0 3 chr6 161777652 161777948 -20637294 + AluY SINE Alu 3 297 -14 2336 81 0 0 chr6 161777961 161778258 -20636984 + AluSg SINE Alu 1 297 -13 2057 79 43 4 chr6 161778728 161779008 -20636234 - AluSx SINE Alu -21 291 1 384 299 92 11 chr6 161779332 161779516 -20635726 - MIR SINE MIR -2 260 62 1189 168 0 5 chr6 161779645 161779848 -20635394 + AluJo SINE Alu 1 202 -110 282 139 0 0 chr6 161779850 161779893 -20635349 + FAM SINE Alu 116 158 -17 2390 67 0 0 chr6 161781208 161781506 -20633736 + AluY SINE Alu 1 298 -13 682 66 11 11 chr6 161781515 161781606 -20633636 - FRAM SINE Alu -59 117 27 2304 63 7 13 chr6 161781638 161781940 -20633302 - AluSc SINE Alu -9 300 1 2004 104 42 0 chr6 161783073 161783361 -20631881 + AluSx SINE Alu 1 300 -12 828 147 0 14 chr6 161783592 161783735 -20631507 + FLAM_C SINE Alu 1 141 -2 2055 104 0 3 chr6 161783916 161784213 -20631029 + AluSx SINE Alu 1 296 -16 2374 50 0 7 chr6 161784227 161784527 -20630715 - AluY SINE Alu -13 298 1 1619 151 29 26 chr6 161785068 161785379 -20629863 - AluSx SINE Alu 0 312 1 4644 146 20 19 chr6 161785379 161786067 -20629175 - L1PB4 LINE L1 -5 6151 5461 2046 120 10 3 chr6 161786067 161786366 -20628876 + AluSx SINE Alu 1 301 -11 4644 146 20 19 chr6 161786366 161786506 -20628736 - L1PB4 LINE L1 -695 5461 5323 262 271 51 0 chr6 161786516 161786575 -20628667 - MIR SINE MIR -181 81 20 2027 107 13 31 chr6 161786827 161787144 -20628098 + AluSq SINE Alu 1 311 -2 250 181 22 174 chr6 161787145 161787283 -20627959 - L1MC4 LINE L1 -13 8029 7913 1527 151 39 7 chr6 161787368 161787647 -20627595 + AluJb SINE Alu 1 288 -24 1058 228 166 73 chr6 161787652 161788060 -20627182 - L1MC4 LINE L1 -151 7891 7398 1999 122 17 0 chr6 161788060 161788355 -20626887 - AluSx SINE Alu -12 300 1 1058 228 166 73 chr6 161788355 161788601 -20626641 - L1MC4 LINE L1 -644 7398 7176 4694 144 15 24 chr6 161789014 161789525 -20625717 - L1MC1 LINE L1 0 6333 5830 2157 84 3 29 chr6 161789525 161789835 -20625407 - AluSg1 SINE Alu -6 303 2 4694 144 15 24 chr6 161789835 161790123 -20625119 - L1MC1 LINE L1 -503 5830 5541 963 245 53 11 chr6 161790367 161790646 -20624596 - L1MC4 LINE L1 -310 7685 7342 2334 70 6 6 chr6 161790646 161790958 -20624284 - AluSx SINE Alu 0 312 1 963 245 53 11 chr6 161790958 161790986 -20624256 - L1MC4 LINE L1 -653 7342 7317 1922 110 0 0 chr6 161792403 161792667 -20622575 - AluSx SINE Alu -48 264 1 2100 98 7 7 chr6 161793107 161793414 -20621828 + AluSx SINE Alu 2 308 -4 1927 124 7 0 chr6 161794149 161794439 -20620803 - AluSx SINE Alu -20 292 1 2108 95 0 14 chr6 161794685 161794980 -20620262 - AluY SINE Alu -20 291 1 233 152 43 0 chr6 161795671 161795717 -20619525 - L1ME LINE L1 -202 5919 5872 227 217 33 33 chr6 161795829 161795889 -20619353 - L1MC4 LINE L1 -375 7667 7608 1955 204 84 79 chr6 161796104 161796706 -20618536 - L1MC4 LINE L1 -454 7588 6980 303 167 226 12 chr6 161796706 161796790 -20618452 - U13 snRNA snRNA -2 102 1 1955 204 84 79 chr6 161796790 161796968 -20618274 - L1MC4 LINE L1 -1062 6980 6804 238 222 37 12 chr6 161797038 161797119 -20618123 - L1MC5 LINE L1 -571 7390 7308 23 0 0 0 chr6 161797409 161797432 -20617810 + AT_rich Low_complexity Low_complexity 1 23 0 2052 113 7 10 chr6 161797434 161797567 -20617675 + AluSx SINE Alu 3 135 -177 1855 76 94 31 chr6 161797567 161797855 -20617387 + AluY SINE Alu 1 306 -5 2052 113 7 10 chr6 161797855 161798021 -20617221 + AluSx SINE Alu 135 301 -11 1615 192 0 0 chr6 161798034 161798326 -20616916 + AluJb SINE Alu 1 292 -20 2336 50 3 0 chr6 161804042 161804349 -20610893 - AluY SINE Alu 0 308 1 1389 188 10 33 chr6 161804354 161804658 -20610584 - AluJo SINE Alu -15 297 1 1893 112 29 4 chr6 161804662 161804966 -20610276 - AluSx SINE Alu 0 311 1 2085 103 0 0 chr6 161804971 161805278 -20609964 - AluSc SINE Alu 0 307 1 875 56 0 0 chr6 161806849 161806988 -20608254 - AluSp/q SINE Alu 0 317 179 189 0 0 0 chr6 161807387 161807408 -20607834 + (T)n Simple_repeat Simple_repeat 1 21 0 1029 169 164 0 chr6 161808717 161808936 -20606306 - AluJo SINE Alu -23 289 35 711 208 0 0 chr6 161808993 161809118 -20606124 - FLAM_C SINE Alu -17 126 2 1895 96 38 24 chr6 161809136 161809427 -20605815 - MER39B LTR ERV1 -83 570 276 1879 159 13 0 chr6 161809437 161809745 -20605497 - AluSx SINE Alu 0 312 1 2360 70 3 0 chr6 161809756 161810056 -20605186 - AluY SINE Alu -10 301 1 1440 172 25 11 chr6 161810302 161810581 -20604661 - AluJo SINE Alu -19 293 11 314 310 78 0 chr6 161811225 161811354 -20603888 + MER20 DNA MER1_type 60 198 -21 731 161 31 8 chr6 161811430 161811560 -20603682 + FLAM_A SINE Alu 1 133 0 189 347 0 0 chr6 161811588 161811637 -20603605 - L2 LINE L2 -698 2616 2568 201 289 24 60 chr6 161811794 161811877 -20603365 - L2 LINE L2 -976 2338 2259 2248 67 3 0 chr6 161812264 161812574 -20602668 + AluSp SINE Alu 1 311 0 1574 109 0 0 chr6 161812988 161813198 -20602044 - AluSg/x SINE Alu -25 285 76 235 267 86 52 chr6 161813250 161813366 -20601876 - MIR SINE MIR -66 196 77 2365 71 3 3 chr6 161813392 161813700 -20601542 + AluSx SINE Alu 2 309 -3 2259 91 0 0 chr6 161816803 161817100 -20598142 - AluSx SINE Alu -15 297 1 377 294 32 16 chr6 161817217 161817343 -20597899 - MIR SINE MIR -106 156 29 322 245 20 82 chr6 161817367 161817465 -20597777 - MIR SINE MIR -82 180 89 2380 62 0 10 chr6 161817822 161818127 -20597115 - AluY SINE Alu -8 303 2 2004 119 7 0 chr6 161818130 161818433 -20596809 - AluSx SINE Alu -7 305 1 2077 114 13 10 chr6 161818434 161818742 -20596500 - AluSx SINE Alu -3 309 1 1258 163 125 26 chr6 161819039 161819303 -20595939 - AluJo SINE Alu -22 290 1 25 0 0 0 chr6 161819303 161819328 -20595914 + AT_rich Low_complexity Low_complexity 1 25 0 1293 101 6 0 chr6 161819370 161819548 -20595694 + AluSx SINE Alu 1 179 -133 303 98 0 0 chr6 161819548 161819617 -20595625 + AluSp/q SINE Alu 244 312 0 1701 70 0 0 chr6 161819818 161820032 -20595210 - AluSq SINE Alu -16 297 84 206 301 73 73 chr6 161820879 161821015 -20594227 - L2 LINE L2 -14 3299 3164 181 349 48 24 chr6 161821276 161821402 -20593840 - L2 LINE L2 -465 2849 2721 2593 39 0 3 chr6 161822553 161822864 -20592378 + AluY SINE Alu 2 311 0 637 237 35 40 chr6 161823226 161823424 -20591818 - L1M4 LINE L1 -1953 4193 3997 277 399 35 21 chr6 161823527 161823670 -20591572 + MIR SINE MIR 3 147 -61 326 269 19 39 chr6 161823985 161824089 -20591153 + MIR SINE MIR 34 135 -127 297 0 0 0 chr6 161824090 161824123 -20591119 + (T)n Simple_repeat Simple_repeat 1 33 0 364 286 33 0 chr6 161824514 161824605 -20590637 + MER91A DNA MER1_type 86 179 -17 257 290 151 0 chr6 161824601 161824694 -20590548 + MER91A DNA MER1_type 90 196 0 * 532 280 69 17 chr6 161824708 161824883 -20590359 + L2 LINE L2 3122 3305 -8 2118 115 0 3 chr6 161824893 161825197 -20590045 - AluSq SINE Alu -10 303 1 1261 126 0 0 chr6 161825483 161825665 -20589577 + AluJb SINE Alu 129 310 -2 635 221 0 0 chr6 161825672 161825785 -20589457 + FRAM SINE Alu 1 112 -64 504 122 12 24 chr6 161825827 161825909 -20589333 + AluJ/FRAM SINE Alu 219 299 -13 259 333 0 12 chr6 161825931 161826015 -20589227 + MLT1L LTR MaLR 322 404 -211 1224 135 64 100 chr6 161826023 161826334 -20588908 + AluJb SINE Alu 11 310 -2 1977 123 0 3 chr6 161826622 161826932 -20588310 + AluY SINE Alu 3 311 0 379 279 70 0 chr6 161827475 161827604 -20587638 - MIR SINE MIR -1 261 124 1199 84 0 6 chr6 161827614 161827805 -20587437 + AluY SINE Alu 119 308 0 1803 92 7 43 chr6 161828013 161828295 -20586947 - AluSq SINE Alu -41 272 1 5119 167 60 22 chr6 161828296 161829796 -20585446 + L1MD1 LINE L1 4681 6234 -8 1259 90 0 0 chr6 161829796 161829962 -20585280 - AluSq SINE Alu -14 299 134 1939 101 27 14 chr6 161829962 161830258 -20584984 - AluSc SINE Alu -7 302 3 31 0 0 0 chr6 161830398 161830429 -20584813 + AT_rich Low_complexity Low_complexity 1 31 0 548 124 134 0 chr6 161830429 161830526 -20584716 - HY1 scRNA scRNA -2 110 1 369 270 63 16 chr6 161831283 161831409 -20583833 - MIR SINE MIR -56 206 75 22 0 0 0 chr6 161831479 161831501 -20583741 + AT_rich Low_complexity Low_complexity 1 22 0 240 258 113 0 chr6 161831645 161831769 -20583473 - L1MC/D LINE L1 -811 5431 5294 1818 159 13 3 chr6 161831785 161832094 -20583148 + AluJo SINE Alu 1 312 0 328 248 146 15 chr6 161832104 161832241 -20583001 - L1MC/D LINE L1 -865 5281 5127 211 282 141 34 chr6 161833003 161833209 -20582033 + L2 LINE L2 1879 2106 -1208 337 263 85 17 chr6 161833547 161833665 -20581577 + L2 LINE L2 2624 2749 -565 2255 106 0 0 chr6 161833665 161833977 -20581265 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 161833977 161833998 -20581244 + AT_rich Low_complexity Low_complexity 1 21 0 2043 134 42 6 chr6 161834329 161834664 -20580578 - MER7A DNA MER2_type 0 346 2 2271 90 3 0 chr6 161834680 161834981 -20580261 - AluSp SINE Alu -11 302 1 2029 89 3 17 chr6 161834981 161835272 -20579970 - AluSq SINE Alu -17 296 10 2112 96 14 0 chr6 161835354 161835646 -20579596 - AluSg SINE Alu -14 296 1 814 133 17 0 chr6 161835655 161835775 -20579467 - FLAM_A SINE Alu -11 122 1 213 108 0 0 chr6 161836171 161836208 -20579034 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 203 226 16 32 chr6 161836412 161836474 -20578768 + MIR SINE MIR 41 101 -161 730 336 50 42 chr6 161836674 161837195 -20578047 - L2 LINE L2 -527 2787 2263 208 328 15 15 chr6 161837285 161837352 -20577890 - MIR3 SINE MIR -139 69 3 1570 167 39 0 chr6 161838698 161838980 -20576262 + AluJb SINE Alu 10 302 -10 2448 180 121 8 chr6 161839166 161839784 -20575458 - Charlie1 DNA MER1_type 0 2761 2074 535 256 16 0 chr6 161839797 161839922 -20575320 - Charlie1a DNA MER1_type -1328 127 1 23 33 0 0 chr6 161840384 161840414 -20574828 + AT_rich Low_complexity Low_complexity 1 30 0 737 165 15 15 chr6 161840960 161841093 -20574149 - FLAM_C SINE Alu 0 133 1 840 118 0 37 chr6 161841568 161841704 -20573538 + FLAM_C SINE Alu 3 133 0 40 0 0 0 chr6 161842703 161842743 -20572499 + GC_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr6 161842953 161842975 -20572267 + GC_rich Low_complexity Low_complexity 1 22 0 209 191 0 0 chr6 161843090 161843132 -20572110 + (CAG)n Simple_repeat Simple_repeat 2 43 0 189 147 0 0 chr6 161843427 161843461 -20571781 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 24 67 0 0 chr6 161843578 161843623 -20571619 + GC_rich Low_complexity Low_complexity 1 45 0 192 77 0 0 chr6 161843942 161843968 -20571274 + (CTG)n Simple_repeat Simple_repeat 3 28 0 198 0 0 0 chr6 161843984 161844006 -20571236 + (CGG)n Simple_repeat Simple_repeat 3 24 0 412 143 60 36 chr6 161844261 161844345 -20570897 - MER81 DNA DNA 0 114 29 225 314 0 17 chr6 161844345 161844463 -20570779 + C-rich Low_complexity Low_complexity 5 120 0 180 83 0 0 chr6 161845368 161845392 -20569850 + L2 LINE L2 3256 3279 -34 1379 176 104 7 chr6 161846515 161846793 -20568449 + AluJo SINE Alu 1 305 -7 2222 84 0 27 chr6 161847073 161847371 -20567871 - AluY SINE Alu -21 290 1 207 0 0 0 chr6 161847397 161847420 -20567822 + (TG)n Simple_repeat Simple_repeat 1 23 0 602 230 128 0 chr6 161847838 161848034 -20567208 + MER112 DNA MER1_type 36 256 -4 769 166 316 30 chr6 161848038 161848423 -20566819 - MLT1F LTR MaLR -11 531 1 2112 104 7 0 chr6 161848447 161848747 -20566495 - AluSx SINE Alu 0 302 1 2422 97 0 3 chr6 161849561 161849871 -20565371 - AluSx SINE Alu -3 309 1 204 284 37 25 chr6 161850188 161850269 -20564973 - L2 LINE L2 -55 3217 3136 2349 82 0 10 chr6 161850384 161850687 -20564555 + AluSc SINE Alu 1 300 -9 620 152 38 61 chr6 161850868 161851000 -20564242 - MER3 DNA MER1_type -80 129 1 499 254 85 12 chr6 161851155 161851320 -20563922 + MIR SINE MIR 12 188 -74 834 271 51 32 chr6 161851412 161851726 -20563516 - L1ME1 LINE L1 -25 6141 5822 490 136 40 128 chr6 161852044 161852145 -20563097 - MER81 DNA DNA 0 114 24 1880 145 41 0 chr6 161852145 161852435 -20562807 + AluSg SINE Alu 1 302 -8 490 136 40 128 chr6 161852435 161852458 -20562784 - MER81 DNA DNA -90 24 1 1452 108 35 0 chr6 161852889 161853121 -20562121 - AluSp SINE Alu -14 299 60 614 143 0 0 chr6 161853228 161853319 -20561923 - AluS SINE Alu -221 92 2 213 336 76 17 chr6 161853376 161853495 -20561747 + L2 LINE L2 3186 3311 -2 2445 67 3 3 chr6 161853658 161853955 -20561287 + AluSq SINE Alu 3 299 -14 2434 51 14 14 chr6 161853955 161854247 -20560995 + AluY SINE Alu 1 292 -19 402 324 34 23 chr6 161854567 161854743 -20560499 - MER5A DNA MER1_type -1 188 11 221 97 0 0 chr6 161855141 161855172 -20560070 - MIR SINE MIR -75 187 157 504 239 45 19 chr6 161855191 161855346 -20559896 - MIR SINE MIR -56 206 48 632 236 201 24 chr6 161855575 161856037 -20559205 - Charlie2 DNA MER1_type -88 2774 2231 437 147 0 0 chr6 161856333 161856401 -20558841 - AluJ/FLAM SINE Alu -238 74 7 2484 55 10 19 chr6 161856998 161857306 -20557936 - AluY SINE Alu -6 305 1 1991 139 7 10 chr6 161857626 161857936 -20557306 - AluSg SINE Alu -1 309 1 2270 74 40 0 chr6 161859118 161859416 -20555826 - AluY SINE Alu -1 310 1 1874 150 25 3 chr6 161859644 161859930 -20555312 + AluJb SINE Alu 1 292 -20 2048 107 3 17 chr6 161860392 161860691 -20554551 + AluY SINE Alu 1 295 -16 1786 128 12 0 chr6 161860979 161861229 -20554013 + AluSq SINE Alu 1 253 -60 1276 178 146 66 chr6 161861288 161861698 -20553544 + MLT1D LTR MaLR 6 448 -57 189 220 80 0 chr6 161862024 161862074 -20553168 + L2 LINE L2 3215 3268 -4 215 282 55 94 chr6 161862083 161862285 -20552957 - L2 LINE L2 -783 2531 2338 331 282 111 0 chr6 161862287 161862404 -20552838 - L2 LINE L2 0 3313 3184 2439 67 0 3 chr6 161862824 161863121 -20552121 - AluY SINE Alu -15 296 1 629 264 75 4 chr6 161863481 161863708 -20551534 - L1M4 LINE L1 -1720 4426 4184 2039 132 7 0 chr6 161863737 161864025 -20551217 - AluSx SINE Alu -22 290 1 1189 206 167 115 chr6 161864680 161864787 -20550455 + MLT1E LTR MaLR 1 101 -492 1965 114 57 7 chr6 161864787 161865068 -20550174 - AluSq SINE Alu -18 295 1 1189 206 167 115 chr6 161865068 161865084 -20550158 + MLT1E LTR MaLR 101 115 -478 825 137 0 50 chr6 161865084 161865223 -20550019 - FLAM_C SINE Alu -1 132 1 1189 206 167 115 chr6 161865223 161865337 -20549905 + MLT1E LTR MaLR 115 222 -371 2640 126 28 14 chr6 161865337 161865759 -20549483 - MSTA LTR MaLR 0 428 1 1189 206 167 115 chr6 161865759 161866015 -20549227 + MLT1E LTR MaLR 222 531 -62 1849 120 65 17 chr6 161866015 161866306 -20548936 - AluSx SINE Alu -7 305 1 1189 206 167 115 chr6 161866306 161866366 -20548876 + MLT1E LTR MaLR 531 586 -7 1296 154 18 48 chr6 161866834 161867061 -20548181 - AluJo SINE Alu -10 302 83 1289 193 105 13 chr6 161867206 161867595 -20547647 + L1MDa LINE L1 1107 1531 -5009 2497 165 66 69 chr6 161867597 161868265 -20546977 + L1MDa LINE L1 1788 2453 -4087 405 163 33 43 chr6 161868255 161868347 -20546895 + L1MD2 LINE L1 5817 5907 -452 * 1620 68 0 19 chr6 161868347 161868552 -20546690 + AluY SINE Alu 74 274 -37 674 223 96 48 chr6 161868652 161868775 -20546467 + L1MD2 LINE L1 5933 6047 -119 2192 123 3 3 chr6 161868775 161869084 -20546158 - AluSx SINE Alu -2 310 2 674 223 96 48 chr6 161869084 161869182 -20546060 + L1MD2 LINE L1 6047 6139 -27 2051 119 0 0 chr6 161869226 161869503 -20545739 - AluSx SINE Alu -9 303 27 874 152 7 33 chr6 161870298 161870449 -20544793 - FRAM SINE Alu -18 158 12 2161 114 20 13 chr6 161870605 161870911 -20544331 - AluSq SINE Alu -5 308 1 1812 193 0 0 chr6 161870937 161871233 -20544009 + AluJo SINE Alu 1 296 -16 770 167 0 42 chr6 161871249 161871393 -20543849 - FRAM SINE Alu -5 171 34 2330 99 3 0 chr6 161871583 161871875 -20543367 - AluSp SINE Alu -20 293 1 2123 132 0 3 chr6 161871875 161872170 -20543072 - AluSx SINE Alu -18 294 1 639 220 134 36 chr6 161872230 161872507 -20542735 + AluJo SINE Alu 9 312 0 1145 167 112 9 chr6 161872653 161872886 -20542356 + AluJo SINE Alu 44 300 -12 310 204 243 0 chr6 161873771 161873874 -20541368 + HsTC2 DNA Tc2 7 134 -1764 * 667 209 51 0 chr6 161873869 161874046 -20541196 + HsTC2 DNA Tc2 1657 1842 -56 772 114 0 9 chr6 161875030 161875144 -20540098 + FLAM_C SINE Alu 4 116 -17 27 0 0 0 chr6 161875144 161875171 -20540071 + AT_rich Low_complexity Low_complexity 1 27 0 1935 170 27 3 chr6 161875321 161875656 -20539586 - MER2 DNA MER2_type 0 344 2 847 209 76 92 chr6 161876904 161877047 -20538195 + L1ME4a LINE L1 5559 5703 -418 2175 114 7 10 chr6 161877047 161877346 -20537896 - AluSx SINE Alu -14 298 1 847 209 76 92 chr6 161877346 161877374 -20537868 + L1ME4a LINE L1 5703 5730 -391 2308 71 7 10 chr6 161877374 161877671 -20537571 + AluY SINE Alu 1 296 -15 847 209 76 92 chr6 161877671 161877866 -20537376 + L1ME4a LINE L1 5730 5920 -201 2180 117 3 0 chr6 161878145 161878435 -20536807 - AluSx SINE Alu -21 291 1 283 47 93 0 chr6 161878691 161878734 -20536508 + MADE1 DNA Mariner 1 47 -33 243 202 0 124 chr6 161878964 161879053 -20536189 + MIR SINE MIR 164 241 -21 2023 127 7 17 chr6 161879140 161879440 -20535802 - AluSx SINE Alu -15 297 1 2392 96 0 3 chr6 161879962 161880264 -20534978 - AluSq SINE Alu -12 301 1 667 95 0 11 chr6 161880372 161880467 -20534775 + AluSg/x SINE Alu 201 294 -15 267 247 32 65 chr6 161880805 161880959 -20534283 - L1ME4a LINE L1 -6 6115 5967 1428 148 113 4 chr6 161880961 161881218 -20534024 + AluJb SINE Alu 26 310 -2 321 241 36 0 chr6 161881296 161881379 -20533863 - L1ME4a LINE L1 -94 6027 5942 1825 177 0 7 chr6 161881628 161881911 -20533331 - AluJo SINE Alu -31 281 1 510 245 109 60 chr6 161882154 161882201 -20533041 - L1ME4a LINE L1 -188 5933 5890 2028 125 3 7 chr6 161882201 161882498 -20532744 - AluSx SINE Alu -16 296 1 510 245 109 60 chr6 161882498 161882797 -20532445 - L1ME4a LINE L1 -231 5890 5570 1121 139 58 133 chr6 161884673 161885003 -20530239 + MER33 DNA MER1_type 1 305 -19 2192 119 3 10 chr6 161885003 161885314 -20529928 - AluSg SINE Alu -1 309 1 262 236 217 0 chr6 161885571 161885677 -20529565 + MIR SINE MIR 64 192 -70 1731 154 12 44 chr6 161886903 161887222 -20528020 - AluJo SINE Alu -3 309 1 2186 113 3 3 chr6 161887935 161888226 -20527016 - AluSx SINE Alu -21 291 1 2248 122 0 0 chr6 161888228 161888524 -20526718 - AluSx SINE Alu -16 296 1 1071 76 0 8 chr6 161888666 161888798 -20526444 - AluSp SINE Alu -182 131 1 2409 100 0 0 chr6 161888901 161889212 -20526030 + AluSp SINE Alu 1 311 -2 405 317 107 12 chr6 161889768 161890011 -20525231 + L3 LINE CR1 1309 1574 -3 706 215 91 62 chr6 161890271 161890513 -20524729 - MER112 DNA MER1_type -11 249 1 372 278 65 0 chr6 161890565 161890673 -20524569 + MIR SINE MIR 140 254 -8 326 294 110 25 chr6 161891586 161891749 -20523493 + Charlie8 DNA MER1_type 6 182 -2235 2050 131 17 0 chr6 161891910 161892201 -20523041 + AluSx SINE Alu 1 296 -16 2227 107 7 0 chr6 161892729 161893038 -20522204 - AluSp SINE Alu -2 311 1 2122 120 10 0 chr6 161893040 161893332 -20521910 - AluSx SINE Alu -17 295 1 376 263 21 11 chr6 161894350 161894445 -20520797 + MER21B LTR ERV1 2 97 -766 2523 229 114 33 chr6 161894452 161895189 -20520053 + MER21B LTR ERV1 20 816 -47 390 209 115 74 chr6 161895297 161895445 -20519797 + MER112 DNA MER1_type 12 165 -95 1358 177 10 47 chr6 161895609 161895909 -20519333 - AluJo SINE Alu -14 298 10 2178 105 14 0 chr6 161896391 161896686 -20518556 - AluSx SINE Alu -13 299 1 208 143 0 0 chr6 161898042 161898077 -20517165 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 21 57 0 0 chr6 161898932 161898967 -20516275 + AT_rich Low_complexity Low_complexity 1 35 0 1577 161 57 47 chr6 161899219 161899517 -20515725 + AluJb SINE Alu 1 301 -11 1823 133 27 20 chr6 161899699 161899993 -20515249 + AluSx SINE Alu 1 296 -16 185 250 39 0 chr6 161900162 161900214 -20515028 - L2 LINE L2 -239 3033 2980 338 289 96 44 chr6 161900506 161900641 -20514601 - MIR SINE MIR -118 144 3 2334 94 0 10 chr6 161900886 161901194 -20514048 - AluSx SINE Alu -7 305 1 1023 172 59 15 chr6 161901268 161901541 -20513701 + L2 LINE L2 802 1086 -2228 1029 256 153 55 chr6 161901544 161901887 -20513355 + L2 LINE L2 2392 2700 -613 1900 108 100 0 chr6 161901887 161902166 -20513076 + AluSx SINE Alu 3 309 -3 * 2163 107 0 7 chr6 161902165 161902464 -20512778 + AluSg SINE Alu 1 297 -13 1029 256 153 55 chr6 161902166 161902708 -20512534 + L2 LINE L2 2700 3093 -220 10215 37 4 138 chr6 161902708 161904297 -20510945 + SVA Other Other 11 1386 0 1029 256 153 55 chr6 161904297 161904394 -20510848 + L2 LINE L2 3093 3179 -134 341 333 22 29 chr6 161904384 161904522 -20510720 - L2 LINE L2 0 3272 3136 * 389 236 89 8 chr6 161904591 161904714 -20510528 + L2 LINE L2 3176 3308 -5 416 156 255 50 chr6 161906230 161906371 -20508871 + MER96 DNA MER1_type? 3 172 -3 22 35 0 0 chr6 161906538 161906567 -20508675 + AT_rich Low_complexity Low_complexity 1 29 0 216 239 84 14 chr6 161908197 161908268 -20506974 - MIR3 SINE MIR -8 200 125 8535 44 1 8 chr6 161908288 161909264 -20505978 - LTR5 LTR ERVK 0 969 1 847 222 6 0 chr6 161909722 161909893 -20505349 - FRAM SINE Alu -4 172 1 214 315 120 0 chr6 161910301 161910393 -20504849 + L2 LINE L2 3156 3258 -14 1842 160 3 0 chr6 161911934 161912222 -20503020 + AluSx SINE Alu 1 289 -23 1855 154 13 0 chr6 161912588 161912887 -20502355 + AluSx SINE Alu 1 303 -9 228 35 0 0 chr6 161913138 161913167 -20502075 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2025 96 0 74 chr6 161913169 161913481 -20501761 - AluSx SINE Alu -23 289 1 2441 81 0 3 chr6 161913582 161913892 -20501350 + AluSc SINE Alu 1 309 0 479 277 25 19 chr6 161913986 161914145 -20501097 - MIR SINE MIR -88 174 15 2246 113 0 0 chr6 161914467 161914758 -20500484 + AluSq SINE Alu 1 291 -22 201 233 36 26 chr6 161914803 161914890 -20500352 - MER5A DNA MER1_type -90 88 14 2080 218 79 34 chr6 161915281 161915837 -20499405 - L1ME3A LINE L1 -5 6165 5585 1473 189 59 3 chr6 161915984 161916270 -20498972 - MER58B DNA MER1_type -17 324 23 * 1830 221 45 23 chr6 161916266 161916737 -20498505 + MARNA DNA Mariner 67 547 -39 464 257 70 27 chr6 161918016 161918203 -20497039 + MIR SINE MIR 39 233 -29 460 290 146 41 chr6 161918427 161918926 -20496316 - L2 LINE L2 -169 3144 2487 2344 96 0 0 chr6 161919012 161919305 -20495937 - AluSx SINE Alu -19 293 1 282 291 94 34 chr6 161919702 161919819 -20495423 - L2 LINE L2 -13 3259 3136 25 65 0 0 chr6 161920003 161920049 -20495193 + AT_rich Low_complexity Low_complexity 1 46 0 2223 93 7 3 chr6 161920055 161920355 -20494887 + AluSx SINE Alu 1 301 -11 772 186 0 16 chr6 161920404 161920533 -20494709 + FLAM_C SINE Alu 2 128 -15 558 270 106 5 chr6 161920561 161920750 -20494492 - MIR SINE MIR -8 254 47 308 289 77 19 chr6 161920915 161921019 -20494223 - MIR3 SINE MIR -37 171 62 1375 195 77 4 chr6 161923732 161924004 -20491238 - AluJb SINE Alu -20 292 1 2364 82 3 0 chr6 161924015 161924309 -20490933 - AluSc SINE Alu -14 295 1 2927 167 87 98 chr6 161924316 161924655 -20490587 - L1MB8 LINE L1 0 6178 5837 953 128 0 0 chr6 161924655 161924788 -20490454 - FLAM_C SINE Alu 0 133 1 2927 167 87 98 chr6 161924788 161925092 -20490150 - L1MB8 LINE L1 -341 5837 5531 2160 106 10 16 chr6 161925092 161925395 -20489847 - AluSx SINE Alu -11 301 1 2927 167 87 98 chr6 161925395 161925616 -20489626 - L1MB8 LINE L1 -647 5531 5309 2295 97 0 3 chr6 161925616 161925914 -20489328 + AluSc SINE Alu 1 297 -12 2927 167 87 98 chr6 161925914 161925934 -20489308 - L1MB8 LINE L1 -869 5309 5290 2021 109 3 7 chr6 161925934 161926217 -20489025 + AluSg SINE Alu 1 282 -28 2927 167 87 98 chr6 161926217 161926378 -20488864 - L1MB8 LINE L1 -888 5290 5146 2291 101 3 19 chr6 161926848 161927165 -20488077 - AluSx SINE Alu 0 312 1 1571 142 97 15 chr6 161927810 161928077 -20487165 - AluJo SINE Alu -10 302 14 189 0 0 0 chr6 161928088 161928109 -20487133 + (T)n Simple_repeat Simple_repeat 1 21 0 2250 82 4 0 chr6 161928242 161928548 -20486694 - AluSq SINE Alu 0 307 1 1366 194 36 93 chr6 161928638 161929025 -20486217 - MLT1A1 LTR MaLR 0 365 1 2239 109 0 34 chr6 161929491 161929812 -20485430 - AluSx SINE Alu -2 310 1 193 217 22 0 chr6 161929888 161929934 -20485308 + L2 LINE L2 3266 3312 -1 2405 96 3 0 chr6 161929973 161930285 -20484957 - AluSq SINE Alu 0 313 1 276 241 156 66 chr6 161930320 161930382 -20484860 - L1ME LINE L1 -233 5888 5833 1972 144 0 3 chr6 161930382 161930687 -20484555 - AluJo SINE Alu -8 304 1 276 241 156 66 chr6 161930687 161930836 -20484406 - L1ME LINE L1 -288 5833 5658 1908 121 11 4 chr6 161930956 161931260 -20483982 - AluSx SINE Alu 0 306 1 225 233 136 0 chr6 161931260 161931363 -20483879 + Charlie4 DNA MER1_type 1791 1907 -54 2228 87 0 0 chr6 161931458 161931763 -20483479 - AluSg SINE Alu 0 309 5 210 250 19 39 chr6 161932403 161932455 -20482787 + MIR SINE MIR 54 104 -104 2335 95 0 0 chr6 161932811 161933105 -20482137 - AluSg SINE Alu -16 294 1 611 140 43 0 chr6 161933267 161933360 -20481882 + AluSg1 SINE Alu 2 98 -211 423 262 0 0 chr6 161933510 161933682 -20481560 + G-rich Low_complexity Low_complexity 1 172 0 331 281 10 52 chr6 161933777 161933969 -20481273 - AluJo SINE Alu -32 270 87 1318 193 105 13 chr6 161934118 161934507 -20480735 + L1MDa LINE L1 1107 1531 -5009 2546 165 66 69 chr6 161934509 161935177 -20480065 + L1MDa LINE L1 1788 2453 -4087 952 177 79 63 chr6 161935167 161935259 -20479983 + L1MD2 LINE L1 5817 5906 -453 * 1764 61 9 17 chr6 161935259 161935490 -20479752 + AluY SINE Alu 74 302 -9 952 177 79 63 chr6 161935490 161935651 -20479591 + L1MD2 LINE L1 5906 6074 -285 229 196 0 0 chr6 161935654 161935705 -20479537 - AluSc SINE Alu -1 298 248 2369 92 0 0 chr6 161936113 161936408 -20478834 + AluSg SINE Alu 1 295 -15 387 243 147 23 chr6 161936625 161936802 -20478440 + MLT1L LTR MaLR 160 358 -257 182 260 182 0 chr6 161936812 161936889 -20478353 - MIR SINE MIR -120 142 52 328 254 201 8 chr6 161937010 161937144 -20478098 - MIR SINE MIR -83 179 20 991 198 48 0 chr6 161937478 161937665 -20477577 + AluJo SINE Alu 1 196 -116 717 73 0 0 chr6 161938150 161938246 -20476996 + (TA)n Simple_repeat Simple_repeat 1 96 0 3424 86 32 2 chr6 161938768 161939208 -20476034 - MLT2A2 LTR ERVL 0 453 1 913 194 6 0 chr6 161939614 161939784 -20475458 - FRAM SINE Alu -5 171 1 788 314 29 8 chr6 161940049 161940294 -20474948 - MIR SINE MIR -2 260 11 858 220 11 16 chr6 161940336 161940518 -20474724 - AluJo SINE Alu -12 300 120 2197 120 0 7 chr6 161940796 161941097 -20474145 - AluSq SINE Alu -14 299 1 1492 284 95 38 chr6 161941115 161941749 -20473493 + L2 LINE L2 613 1282 -2032 363 305 0 0 chr6 161941754 161941859 -20473383 + MER113 DNA MER1_type? 3 107 -414 6910 201 74 32 chr6 161941900 161943883 -20471359 + Cheshire DNA MER1_type 1 2114 -306 2176 79 4 0 chr6 161943883 161944148 -20471094 + AluSp SINE Alu 1 266 -47 6910 201 74 32 chr6 161944148 161944270 -20470972 + Cheshire DNA MER1_type 2114 2229 -191 1062 163 4 90 chr6 161945340 161945520 -20469722 - MLT1A1 LTR MaLR -3 362 207 1739 131 77 4 chr6 161945520 161945794 -20469448 - AluSx SINE Alu -18 294 1 1062 163 4 90 chr6 161945794 161945858 -20469384 - MLT1A1 LTR MaLR -158 207 139 2435 74 3 0 chr6 161945955 161946254 -20468988 - AluY SINE Alu -11 300 1 1674 132 30 0 chr6 161946269 161946534 -20468708 - L1MA5A LINE L1 -3 6294 6022 748 195 13 20 chr6 161946541 161946690 -20468552 - MLT1A1 LTR MaLR -217 148 1 2205 110 7 0 chr6 161947557 161947858 -20467384 + AluSx SINE Alu 1 303 -9 1228 125 37 118 chr6 161948150 161948268 -20466974 - AluJo SINE Alu -13 299 214 2401 105 0 0 chr6 161948268 161948572 -20466670 - AluSx SINE Alu -8 304 1 1228 125 37 118 chr6 161948572 161948725 -20466517 - AluJo SINE Alu -98 214 50 2179 119 3 6 chr6 161948770 161949081 -20466161 - AluSx SINE Alu -2 310 1 289 277 54 1 chr6 161949111 161949193 -20466049 + MIR SINE MIR 52 136 -72 * 351 308 64 23 chr6 161949190 161949362 -20465880 + MIR SINE MIR 48 226 -36 700 182 140 0 chr6 161949474 161949617 -20465625 - MER45A DNA AcHobo 0 178 16 302 244 104 145 chr6 161949748 161950142 -20465100 + L1M2 LINE L1 657 1034 -5815 339 345 0 0 chr6 161950659 161950778 -20464464 + (CA)n Simple_repeat Simple_repeat 1 119 0 242 246 0 0 chr6 161951327 161951384 -20463858 - L1MC4 LINE L1 -133 7909 7853 1666 197 7 3 chr6 161951425 161951729 -20463513 - AluJb SINE Alu -7 305 1 1480 221 154 9 chr6 161951733 161951985 -20463257 - L1MC4 LINE L1 -180 7862 7648 213 65 0 0 chr6 161951985 161952016 -20463226 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1480 221 154 9 chr6 161952016 161952229 -20463013 - L1MC4 LINE L1 -394 7648 7329 498 311 58 15 chr6 161952672 161952878 -20462364 + MIR SINE MIR 48 262 0 1672 137 34 8 chr6 161953075 161953338 -20461904 + AluJb SINE Alu 35 304 -8 2021 105 84 0 chr6 161953628 161953914 -20461328 + AluSq SINE Alu 2 311 -2 208 282 26 13 chr6 161954120 161954198 -20461044 + MIR SINE MIR 112 190 -72 1644 155 11 4 chr6 161954333 161954598 -20460644 - L1MB3 LINE L1 -15 6168 5902 231 224 0 0 chr6 161954599 161954648 -20460594 - L1MB2 LINE L1 -228 5943 5895 * 265 180 0 0 chr6 161954634 161954684 -20460558 - L1MB2 LINE L1 -220 5951 5902 231 246 0 0 chr6 161954720 161954777 -20460465 - L1MB2 LINE L1 -220 5951 5895 * 310 175 0 0 chr6 161954763 161954820 -20460422 - L1MB2 LINE L1 -220 5951 5895 292 211 0 0 chr6 161954806 161954863 -20460379 - L1MB2 LINE L1 -220 5951 5895 * 265 196 0 0 chr6 161954849 161954900 -20460342 - L1MB3 LINE L1 -232 5951 5901 * 266 211 0 0 chr6 161954892 161954949 -20460293 - L1MB2 LINE L1 -220 5951 5895 * 288 193 0 0 chr6 161954935 161954992 -20460250 - L1MB2 LINE L1 -220 5951 5895 * 296 193 0 0 chr6 161954978 161955035 -20460207 - L1MB2 LINE L1 -220 5951 5895 289 193 0 0 chr6 161955021 161955078 -20460164 - L1MB2 LINE L1 -220 5951 5895 * 295 190 0 0 chr6 161955064 161955122 -20460120 - L1MB2 LINE L1 -220 5951 5894 268 228 0 0 chr6 161955107 161955164 -20460078 - L1MB2 LINE L1 -220 5951 5895 * 256 228 0 0 chr6 161955150 161955207 -20460035 - L1MB2 LINE L1 -220 5951 5895 * 275 211 0 0 chr6 161955193 161955250 -20459992 - L1MB2 LINE L1 -220 5951 5895 275 211 0 0 chr6 161955236 161955293 -20459949 - L1MB2 LINE L1 -220 5951 5895 275 211 0 0 chr6 161955279 161955336 -20459906 - L1MB2 LINE L1 -220 5951 5895 266 211 0 0 chr6 161955322 161955379 -20459863 - L1MB2 LINE L1 -220 5951 5895 * 288 193 0 0 chr6 161955365 161955422 -20459820 - L1MB2 LINE L1 -220 5951 5895 * 296 193 0 0 chr6 161955408 161955465 -20459777 - L1MB2 LINE L1 -220 5951 5895 289 193 0 0 chr6 161955451 161955508 -20459734 - L1MB2 LINE L1 -220 5951 5895 * 302 190 0 0 chr6 161955494 161955552 -20459690 - L1MB2 LINE L1 -220 5951 5894 264 222 0 0 chr6 161955540 161955594 -20459648 - L1MB2 LINE L1 -223 5948 5895 * 2880 148 8 25 chr6 161955580 161956101 -20459141 - L1MB3 LINE L1 -232 5951 5440 1159 250 43 25 chr6 161956288 161956822 -20458420 + L1MEc LINE L1 2151 2657 -3558 1456 189 163 9 chr6 161957100 161957449 -20457793 + L1MD3 LINE L1 7580 7982 -13 820 196 7 7 chr6 161958058 161958211 -20457031 + FRAM SINE Alu 1 152 -24 240 233 183 0 chr6 161958668 161958728 -20456514 - L2 LINE L2 -2 3270 3200 2198 87 0 30 chr6 161958821 161959119 -20456123 + AluSc SINE Alu 1 289 -20 324 239 43 82 chr6 161959120 161959304 -20455938 - L2 LINE L2 -112 3201 3025 2274 113 0 3 chr6 161959374 161959685 -20455557 - AluSx SINE Alu -1 311 2 481 120 152 88 chr6 161959697 161959822 -20455420 - L1MC4 LINE L1 -484 7558 7426 964 219 116 13 chr6 161959844 161960239 -20455003 + L1MC4 LINE L1 7579 8042 0 27 108 0 0 chr6 161960342 161960453 -20454789 + AT_rich Low_complexity Low_complexity 1 111 0 2301 76 0 3 chr6 161961337 161961628 -20453614 + AluY SINE Alu 3 292 -19 1846 166 0 16 chr6 161961748 161962062 -20453180 + AluJo SINE Alu 1 309 -3 2097 153 5 23 chr6 161962641 161962994 -20452248 + MLT2D LTR ERVL 69 414 0 386 183 125 58 chr6 161963160 161963280 -20451962 - ORSL DNA AcHobo 0 275 148 345 182 0 0 chr6 161963283 161963338 -20451904 + Tigger5 DNA MER2_type 1 55 -2268 * 380 219 0 0 chr6 161963307 161963380 -20451862 + Tigger5 DNA MER2_type 2251 2323 0 839 129 50 7 chr6 161963380 161963520 -20451722 - ORSL DNA AcHobo -129 146 1 2445 88 3 0 chr6 161963574 161963882 -20451360 + AluSc SINE Alu 1 309 0 2022 127 3 10 chr6 161964190 161964490 -20450752 + AluSq SINE Alu 2 299 -14 1203 116 0 0 chr6 161964493 161964669 -20450573 + AluSg/x SINE Alu 126 301 0 2381 87 10 0 chr6 161964669 161964979 -20450263 + AluSp SINE Alu 1 313 0 458 45 0 15 chr6 161965129 161965195 -20450047 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 2065 110 29 0 chr6 161965776 161966057 -20449185 + AluSg SINE Alu 1 289 -21 256 333 0 0 chr6 161966090 161966165 -20449077 + MIR SINE MIR 1 75 -187 209 131 377 0 chr6 161966167 161966228 -20449014 - L2 LINE L2 -1 3271 3188 2324 105 10 0 chr6 161966665 161966969 -20448273 - AluSx SINE Alu -5 307 1 207 333 0 0 chr6 161967334 161967394 -20447848 + (TTCA)n Simple_repeat Simple_repeat 1 60 0 309 258 0 0 chr6 161967411 161967477 -20447765 - L2 LINE L2 -4 3309 3244 487 161 123 46 chr6 161967534 161967664 -20447578 - L2 LINE L2 -1 3312 3173 233 162 122 14 chr6 161967709 161967783 -20447459 + Charlie7 DNA MER1_type 2440 2521 -91 1620 164 17 14 chr6 161967784 161968076 -20447166 - AluJo SINE Alu -18 294 2 2209 125 0 0 chr6 161968085 161968390 -20446852 - AluSx SINE Alu -5 307 3 236 276 23 58 chr6 161968485 161968572 -20446670 + MIR SINE MIR 16 99 -163 643 258 186 46 chr6 161968874 161969270 -20445972 + L1ME4a LINE L1 5528 5867 -254 2182 110 0 13 chr6 161969270 161969569 -20445673 + AluSx SINE Alu 11 305 -7 2203 131 0 6 chr6 161969569 161969882 -20445360 + AluSx SINE Alu 1 312 0 643 258 186 46 chr6 161969882 161969941 -20445301 + L1ME4a LINE L1 5866 6048 -73 1373 164 18 0 chr6 161970034 161970260 -20444982 + AluJb SINE Alu 83 312 0 477 127 0 0 chr6 161970260 161970339 -20444903 + (GGGA)n Simple_repeat Simple_repeat 2 80 0 312 83 83 0 chr6 161971178 161971226 -20444016 - MER4D LTR ERV1 0 872 821 2002 121 11 4 chr6 161971227 161971507 -20443735 - AluSx SINE Alu -24 288 7 3464 117 10 17 chr6 161971512 161971721 -20443521 - MER4D LTR ERV1 -351 521 312 2400 96 0 0 chr6 161971721 161972022 -20443220 + AluSc SINE Alu 6 306 -3 3464 117 10 17 chr6 161972022 161972333 -20442909 - MER4D LTR ERV1 -560 312 5 3052 158 36 80 chr6 161972442 161972984 -20442258 - LTR9 LTR ERV1 0 612 48 2100 119 13 3 chr6 161972984 161973287 -20441955 + AluSp SINE Alu 1 306 -7 3052 158 36 80 chr6 161973287 161973353 -20441889 - LTR9 LTR ERV1 -564 48 31 2227 93 3 37 chr6 161973353 161973674 -20441568 - AluSg SINE Alu 0 310 1 3052 158 36 80 chr6 161973674 161973704 -20441538 - LTR9 LTR ERV1 -581 31 1 1526 88 9 5 chr6 161974351 161974566 -20440676 - MER41B LTR ERV1 0 635 420 4628 59 6 31 chr6 161974571 161975635 -20439607 - MER11A LTR ERVK 0 1266 1 2560 134 35 2 chr6 161975638 161976042 -20439200 - MER41B LTR ERV1 -218 417 1 5178 98 21 6 chr6 161976290 161976971 -20438271 + LTR8 LTR ERV1 1 691 0 910 212 0 18 chr6 161977378 161977548 -20437694 + MER41C LTR ERV1 1 167 -387 2256 94 0 10 chr6 161977632 161977941 -20437301 + AluY SINE Alu 1 306 -5 1124 135 0 0 chr6 161977947 161978103 -20437139 + AluSp SINE Alu 140 295 -18 816 152 48 0 chr6 161978103 161978248 -20436994 + MER41C LTR ERV1 212 363 -191 1730 184 98 37 chr6 161978273 161978751 -20436491 + LTR10A LTR ERV1 82 630 -3 1258 172 0 31 chr6 161978751 161978969 -20436273 + MER41C LTR ERV1 344 554 0 2305 108 3 0 chr6 161979335 161979632 -20435610 + AluSx SINE Alu 1 298 -14 2649 143 67 12 chr6 161979779 161980266 -20434976 - MER61E LTR ERV1 0 569 2 305 264 25 104 chr6 161980746 161980857 -20434385 - L1MC4a LINE L1 -1884 5924 5806 2455 86 3 0 chr6 161980857 161981161 -20434081 - AluY SINE Alu -6 305 1 305 264 25 104 chr6 161981161 161981213 -20434029 - L1MC4a LINE L1 -2002 5806 5777 1599 182 35 103 chr6 161981213 161981696 -20433546 + LTR7 LTR ERV1 1 450 0 305 264 25 104 chr6 161981696 161981732 -20433510 - L1MC4a LINE L1 -2031 5777 5740 756 158 0 0 chr6 161981999 161982132 -20433110 + CT-rich Low_complexity Low_complexity 3 135 0 2053 121 7 3 chr6 161982150 161982448 -20432794 - AluSc SINE Alu -10 299 1 1097 119 6 0 chr6 161982448 161982607 -20432635 - AluSc SINE Alu -15 294 135 1543 173 7 40 chr6 161982824 161983124 -20432118 - AluJb SINE Alu -22 290 1 263 146 18 0 chr6 161983600 161983655 -20431587 + GA-rich Low_complexity Low_complexity 1 56 0 2083 109 22 0 chr6 161984495 161984769 -20430473 + AluSg SINE Alu 5 284 -26 2167 114 0 0 chr6 161985305 161985604 -20429638 + AluSc SINE Alu 3 301 -8 1323 224 94 3 chr6 161985692 161985978 -20429264 - MSTD LTR MaLR 0 396 85 378 262 29 95 chr6 161985978 161986325 -20428917 - L1ME4a LINE L1 -287 5834 5511 28 29 0 0 chr6 161986347 161986382 -20428860 + AT_rich Low_complexity Low_complexity 1 35 0 2155 104 18 0 chr6 161986382 161986661 -20428581 - AluSg SINE Alu -26 284 1 245 273 134 21 chr6 161986684 161986878 -20428364 - L1ME4a LINE L1 -2332 5476 5261 688 168 65 45 chr6 161987021 161987176 -20428066 + MLT1A1 LTR MaLR 2 159 -206 1394 171 0 5 chr6 161987247 161987469 -20427773 + AluJb SINE Alu 1 221 -91 423 314 102 25 chr6 161987474 161987566 -20427676 + L1 LINE L1 4025 4108 -2038 2483 94 34 55 chr6 161987566 161987949 -20427293 - THE1C LTR MaLR 0 375 1 423 314 102 25 chr6 161987949 161988250 -20426992 + L1 LINE L1 4108 4384 -1762 2270 123 7 0 chr6 161988250 161988559 -20426683 + AluSx SINE Alu 1 311 -1 423 314 102 25 chr6 161988559 161988765 -20426477 + L1 LINE L1 4384 4701 -1445 2425 81 0 3 chr6 161988972 161989279 -20425963 - AluY SINE Alu -5 306 1 1043 177 0 11 chr6 161989419 161989600 -20425642 + AluSg/x SINE Alu 119 297 -13 288 333 0 11 chr6 161989600 161989693 -20425549 + GA-rich Low_complexity Low_complexity 1 92 0 232 257 0 29 chr6 161989704 161989809 -20425433 + GA-rich Low_complexity Low_complexity 2 103 0 219 276 46 46 chr6 161989959 161990046 -20425196 - MIR3 SINE MIR -113 95 9 256 122 0 0 chr6 161990181 161990222 -20425020 - L1MA4 LINE L1 -7 6293 6253 1177 21 0 7 chr6 161990260 161990400 -20424842 + AluYa5/8 SINE Alu 170 308 -2 2036 106 3 3 chr6 161990775 161991057 -20424185 - AluY SINE Alu -29 282 1 2371 90 3 3 chr6 161991089 161991389 -20423853 + AluSp SINE Alu 1 300 -13 1765 147 39 3 chr6 161991773 161992059 -20423183 - AluJb SINE Alu -16 296 1 452 240 27 93 chr6 161992774 161992957 -20422285 + Charlie8 DNA MER1_type 1 171 -2246 1429 191 3 53 chr6 161993444 161993764 -20421478 - AluJo SINE Alu -8 304 1 2293 99 0 0 chr6 161994215 161994508 -20420734 + AluSc SINE Alu 17 309 0 1944 254 117 27 chr6 161996585 161996684 -20418558 + L2 LINE L2 1681 1770 -1544 2185 106 10 3 chr6 161996684 161996977 -20418265 + AluSq SINE Alu 1 295 -18 1944 254 117 27 chr6 161996977 161997510 -20417732 + L2 LINE L2 1770 2370 -944 427 301 95 8 chr6 161997530 161997792 -20417450 + L1M4 LINE L1 2220 2504 -3642 353 299 43 39 chr6 161997769 161998003 -20417239 + L1M4 LINE L1 4144 4378 -1768 * 320 240 156 0 chr6 161998214 161998310 -20416932 - L1ME LINE L1 -517 5604 5494 339 198 0 37 chr6 161999980 162000061 -20415181 - MER116 DNA Mariner -2 78 1 22 0 0 0 chr6 162000138 162000160 -20415082 + AT_rich Low_complexity Low_complexity 1 22 0 213 315 0 0 chr6 162000335 162000389 -20414853 + L2 LINE L2 3209 3262 -10 228 67 0 44 chr6 162000809 162000854 -20414388 - L1PA8 LINE L1 0 6172 6130 541 269 65 16 chr6 162000897 162001083 -20414159 - MIR SINE MIR -21 241 47 2264 106 3 0 chr6 162001204 162001507 -20413735 - AluSq SINE Alu -9 304 1 461 281 169 6 chr6 162002528 162002706 -20412536 + MIR SINE MIR 2 208 -54 732 213 11 40 chr6 162003040 162003214 -20412028 - MER5B DNA MER1_type 0 178 10 411 359 6 45 chr6 162003509 162003665 -20411577 + MER91A DNA MER1_type 25 174 -22 1699 142 62 53 chr6 162003829 162004166 -20411076 + THE1C LTR MaLR 1 340 -35 369 302 145 6 chr6 162004562 162004734 -20410508 - MIR SINE MIR -65 197 2 206 240 20 20 chr6 162005274 162005324 -20409918 + MIR SINE MIR 81 130 -78 226 369 82 16 chr6 162005814 162005936 -20409306 - L2 LINE L2 -24 3248 3119 195 42 0 0 chr6 162007798 162007822 -20407420 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 462 65 0 0 chr6 162008876 162008938 -20406304 + (TCC)n Simple_repeat Simple_repeat 1 62 0 201 249 31 30 chr6 162009106 162009185 -20406057 + GA-rich Low_complexity Low_complexity 1 79 0 319 276 32 49 chr6 162009474 162009597 -20405645 + L2 LINE L2 3143 3263 -9 372 290 47 9 chr6 162009609 162009716 -20405526 + MIR3 SINE MIR 93 203 -5 1445 170 61 96 chr6 162010247 162010472 -20404770 - MLT1A1 LTR MaLR 0 365 157 2463 62 0 16 chr6 162010472 162010777 -20404465 - AluY SINE Alu -11 300 1 1445 170 61 96 chr6 162010777 162010927 -20404315 - MLT1A1 LTR MaLR -208 157 3 239 316 132 0 chr6 162011015 162011151 -20404091 - L2 LINE L2 -230 3042 2889 378 0 0 0 chr6 162011342 162011384 -20403858 + (GA)n Simple_repeat Simple_repeat 1 42 0 647 284 74 4 chr6 162011727 162011956 -20403286 + MIR SINE MIR 16 260 -2 616 307 158 25 chr6 162012275 162012718 -20402524 + L2 LINE L2 2812 3313 0 1127 136 12 0 chr6 162012789 162012951 -20402291 - AluSg/x SINE Alu -21 289 126 2271 100 10 6 chr6 162012951 162013262 -20401980 - AluSq SINE Alu -1 312 1 3104 154 4 12 chr6 162013366 162013885 -20401357 + L1MA7 LINE L1 5634 6148 -143 30 0 0 24 chr6 162013885 162013904 -20401338 + AT_rich Low_complexity Low_complexity 1 19 -21 2121 116 14 0 chr6 162013904 162014188 -20401054 + AluSx SINE Alu 1 288 -24 30 0 0 24 chr6 162014188 162014209 -20401033 + AT_rich Low_complexity Low_complexity 19 40 0 845 112 0 0 chr6 162014209 162014325 -20400917 - FLAM_C SINE Alu -25 118 3 971 120 7 0 chr6 162014336 162014478 -20400764 + L1MA7 LINE L1 6144 6286 -5 1229 105 0 23 chr6 162014486 162014520 -20400722 - AluSx SINE Alu -145 167 134 2260 116 0 0 chr6 162014520 162014831 -20400411 - AluSx SINE Alu -1 311 1 1229 105 0 23 chr6 162014831 162014967 -20400275 - AluSx SINE Alu -178 134 1 2378 64 13 7 chr6 162015022 162015320 -20399922 - AluY SINE Alu -11 300 1 1503 194 4 0 chr6 162015795 162016053 -20399189 + AluJo SINE Alu 1 259 -53 6347 56 4 4 chr6 162016205 162016958 -20398284 - L1PA8 LINE L1 0 6172 5420 214 383 9 9 chr6 162017430 162017537 -20397705 - L2 LINE L2 0 3272 3166 207 162 0 0 chr6 162017660 162017697 -20397545 + CT-rich Low_complexity Low_complexity 1 37 0 599 198 0 10 chr6 162019226 162019327 -20395915 - FLAM_A SINE Alu -25 117 18 201 269 45 0 chr6 162019488 162019555 -20395687 + MIR SINE MIR 91 160 -102 439 221 105 76 chr6 162020320 162020385 -20394857 - MER5B DNA MER1_type -1 177 115 2254 117 0 0 chr6 162020385 162020683 -20394559 + AluSx SINE Alu 1 298 -14 439 221 105 76 chr6 162020683 162020789 -20394453 - MER5B DNA MER1_type -63 115 1 2187 118 0 3 chr6 162020882 162021179 -20394063 - AluSc SINE Alu -13 296 1 1720 139 0 19 chr6 162021545 162021811 -20393431 - AluSx SINE Alu -13 299 39 438 303 65 54 chr6 162021829 162022225 -20393017 + L2 LINE L2 2766 3164 -149 1506 178 53 54 chr6 162022225 162022386 -20392856 - MLT1A2 LTR MaLR -2 591 431 2245 110 19 7 chr6 162022386 162022694 -20392548 - AluSx SINE Alu 0 312 1 1506 178 53 54 chr6 162022694 162022904 -20392338 - MLT1A2 LTR MaLR -162 431 1 691 195 0 8 chr6 162022922 162023045 -20392197 + L2 LINE L2 3187 3308 -5 1942 136 3 44 chr6 162025890 162026206 -20389036 - AluSx SINE Alu -9 303 1 262 333 52 7 chr6 162026666 162026801 -20388441 - L2 LINE L2 -661 2653 2513 2997 3 0 0 chr6 162027309 162027627 -20387615 - AluYb8 SINE Alu 0 318 1 868 187 68 89 chr6 162028105 162028340 -20386902 - AluJo SINE Alu -18 294 65 2335 59 0 11 chr6 162028598 162028884 -20386358 + AluY SINE Alu 1 283 -28 405 0 0 0 chr6 162028884 162028929 -20386313 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 414 274 144 0 chr6 162030551 162030697 -20384545 + MIR SINE MIR 18 184 -78 1302 134 114 137 chr6 162030724 162031075 -20384167 - MER2 DNA MER2_type 0 344 2 24 0 0 0 chr6 162032043 162032067 -20383175 + AT_rich Low_complexity Low_complexity 1 24 0 456 289 46 20 chr6 162035185 162035337 -20379905 + MIR SINE MIR 41 196 -66 244 125 229 0 chr6 162035407 162035455 -20379787 + L2 LINE L2 3213 3271 -1 2181 114 0 0 chr6 162035821 162036110 -20379132 - AluSx SINE Alu -21 291 3 638 301 73 23 chr6 162036236 162036455 -20378787 - MIR SINE MIR -21 241 12 325 198 28 94 chr6 162036553 162036659 -20378583 + MIR SINE MIR 108 206 -56 2120 129 3 0 chr6 162036700 162037003 -20378239 + AluSx SINE Alu 1 304 -8 1990 138 0 3 chr6 162038383 162038719 -20376523 + AluSx SINE Alu 1 335 0 180 311 40 0 chr6 162038742 162038816 -20376426 + L2 LINE L2 3231 3307 -6 187 195 24 0 chr6 162039580 162039621 -20375621 + MIR SINE MIR 111 152 -110 22 0 0 0 chr6 162039819 162039841 -20375401 + AT_rich Low_complexity Low_complexity 1 22 0 225 278 74 46 chr6 162039860 162039968 -20375274 + MIR3 SINE MIR 93 203 -5 1985 109 8 0 chr6 162040011 162040278 -20374964 + AluSx SINE Alu 1 269 -43 1961 133 0 24 chr6 162040288 162040581 -20374661 + AluJo SINE Alu 11 296 -16 201 74 0 0 chr6 162042858 162042885 -20372357 + (T)n Simple_repeat Simple_repeat 1 27 0 1955 123 3 14 chr6 162043460 162043753 -20371489 + AluSq SINE Alu 23 312 -1 25 31 0 0 chr6 162044899 162044931 -20370311 + AT_rich Low_complexity Low_complexity 1 32 0 2201 80 0 61 chr6 162046423 162046749 -20368493 - AluSx SINE Alu -6 306 1 388 354 44 6 chr6 162046904 162047062 -20368180 - MIR SINE MIR -52 210 47 267 277 71 7 chr6 162049394 162049535 -20365707 - L1ME4a LINE L1 -22 6099 5950 191 114 29 0 chr6 162049654 162049689 -20365553 + (TA)n Simple_repeat Simple_repeat 1 36 0 408 345 67 21 chr6 162050383 162051000 -20364242 - L1MC4a LINE L1 -1909 5899 5255 4580 125 37 32 chr6 162051084 162051932 -20363310 - L1MA8 LINE L1 -60 6231 5380 21 57 0 0 chr6 162052018 162052053 -20363189 + AT_rich Low_complexity Low_complexity 1 35 0 336 301 57 62 chr6 162052110 162052303 -20362939 - L1MC4a LINE L1 -1088 5058 4867 293 136 45 15 chr6 162052668 162052734 -20362508 + MER116 DNA Mariner 1 68 -12 29623 98 12 25 chr6 162052768 162053419 -20361823 - L1PA7 LINE L1 -1 6468 5810 2517 71 0 0 chr6 162053419 162053715 -20361527 - AluY SINE Alu -15 296 1 29623 98 12 25 chr6 162053715 162059508 -20355734 - L1PA7 LINE L1 -659 5810 8 316 291 33 20 chr6 162059802 162059953 -20355289 + L1ME4a LINE L1 5964 6116 -5 183 80 0 0 chr6 162060254 162060279 -20354963 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 733 257 70 113 chr6 162061265 162061779 -20353463 - L2 LINE L2 -3 3310 2819 452 310 37 37 chr6 162062345 162062532 -20352710 - MIR SINE MIR -4 258 72 471 217 46 20 chr6 162062670 162062822 -20352420 - MER103 DNA DNA -10 156 1 374 361 47 81 chr6 162063119 162063504 -20351738 - L2 LINE L2 -29 3243 2872 188 281 78 16 chr6 162064029 162064093 -20351149 - L2 LINE L2 0 3313 3246 212 261 46 31 chr6 162064469 162064534 -20350708 - L2 LINE L2 -533 2781 2716 833 129 43 37 chr6 162065327 162065490 -20349752 + L1PB4 LINE L1 5901 6064 -92 312 311 93 26 chr6 162065530 162065681 -20349561 - HAL1 LINE L1 -1832 675 515 338 68 0 149 chr6 162065737 162065781 -20349461 + L1PB4 LINE L1 6085 6115 -41 2281 105 0 3 chr6 162065781 162066087 -20349155 + AluSx SINE Alu 1 305 -7 338 68 0 149 chr6 162066087 162066116 -20349126 + L1PB4 LINE L1 6115 6147 -9 239 302 121 27 chr6 162066128 162066426 -20348816 + HAL1 LINE L1 66 391 -2116 368 264 88 42 chr6 162066450 162066643 -20348599 + HAL1 LINE L1 510 711 -1796 288 102 0 0 chr6 162066753 162066802 -20348440 + (CA)n Simple_repeat Simple_repeat 1 49 0 363 178 0 14 chr6 162068298 162068371 -20346871 - LTR67 LTR ERVL 0 557 486 1170 247 26 73 chr6 162068371 162068526 -20346716 - L1M4 LINE L1 -1615 4531 4370 2436 62 0 16 chr6 162068526 162068830 -20346412 - AluY SINE Alu -12 299 1 1170 247 26 73 chr6 162068830 162069393 -20345849 - L1M4 LINE L1 -1776 4370 3851 2268 125 0 0 chr6 162069393 162069696 -20345546 - AluSx SINE Alu -9 303 1 1170 247 26 73 chr6 162069696 162069770 -20345472 - L1M4 LINE L1 -2295 3851 3775 1889 163 19 32 chr6 162069825 162070194 -20345048 + THE1B LTR MaLR 1 364 0 416 271 169 27 chr6 162070283 162070508 -20344734 + MIR SINE MIR 6 262 0 494 252 8 0 chr6 162070727 162070858 -20344384 - L1MA10 LINE L1 -2 6332 6201 1953 204 0 8 chr6 162071232 162071600 -20343642 + MLT1A1 LTR MaLR 1 365 0 758 261 41 5 chr6 162071774 162071984 -20343258 - MIR SINE MIR -11 251 31 877 147 0 0 chr6 162072004 162072133 -20343109 + FLAM_C SINE Alu 5 133 0 2044 125 10 10 chr6 162073268 162073571 -20341671 + AluSx SINE Alu 1 303 -9 327 65 0 0 chr6 162074707 162074753 -20340489 + (TG)n Simple_repeat Simple_repeat 1 46 0 834 286 42 25 chr6 162075256 162075497 -20339745 - MIR SINE MIR -13 249 5 210 235 0 0 chr6 162075655 162075706 -20339536 + (CAT)n Simple_repeat Simple_repeat 2 52 0 381 252 302 6 chr6 162075739 162075898 -20339344 - MIR SINE MIR -53 209 4 2078 116 10 0 chr6 162076818 162077111 -20338131 - AluSx SINE Alu -11 301 6 881 76 0 0 chr6 162077764 162077883 -20337359 - L1PB3 LINE L1 0 6154 6036 1917 154 22 22 chr6 162077942 162078312 -20336930 + THE1C LTR MaLR 1 370 -5 1942 125 7 26 chr6 162078570 162078873 -20336369 - AluSx SINE Alu -15 297 1 575 264 82 50 chr6 162078873 162079089 -20336153 - MIR SINE MIR -37 225 3 323 309 119 19 chr6 162079323 162079701 -20335541 - L1ME LINE L1 -297 5824 5409 333 243 36 36 chr6 162079936 162080076 -20335166 - L1MC4a LINE L1 -1884 5924 5785 1728 129 0 21 chr6 162080486 162080772 -20334470 - L1M3 LINE L1 -444 5727 5448 445 266 57 25 chr6 162081350 162081508 -20333734 + MIR SINE MIR 93 255 -7 215 311 16 0 chr6 162082114 162082175 -20333067 - L2 LINE L2 -2 3311 3250 2047 119 0 64 chr6 162082302 162082630 -20332612 - AluSx SINE Alu -5 307 1 290 224 15 15 chr6 162083374 162083441 -20331801 + CT-rich Low_complexity Low_complexity 1 67 0 410 97 14 0 chr6 162083770 162083842 -20331400 - L1MA9 LINE L1 0 6312 6240 3196 195 68 13 chr6 162083873 162084638 -20330604 - L1MA9 LINE L1 -38 6274 5468 477 273 50 16 chr6 162084687 162084885 -20330357 + MIR SINE MIR 6 261 -1 324 250 52 21 chr6 162084937 162085033 -20330209 + L2 LINE L2 3215 3313 0 278 328 15 38 chr6 162085176 162085307 -20329935 - MER5A DNA MER1_type -26 163 36 3668 197 56 3 chr6 162085955 162087146 -20328096 - L1MB7 LINE L1 -20 6164 4912 261 363 53 33 chr6 162087170 162087473 -20327769 + L2 LINE L2 2593 2901 -413 22 0 0 0 chr6 162087913 162087935 -20327307 + AT_rich Low_complexity Low_complexity 1 22 0 2496 141 92 37 chr6 162087935 162088481 -20326761 - L1MB2 LINE L1 -2 6169 5594 572 241 141 25 chr6 162088961 162089160 -20326082 + MIR SINE MIR 7 228 -34 2368 178 56 8 chr6 162089757 162090363 -20324879 - L1MB7 LINE L1 -12 6172 5443 281 274 86 21 chr6 162090541 162090727 -20324515 - L1MC4a LINE L1 -1906 5902 5705 364 285 23 39 chr6 162090795 162090925 -20324317 - L1MC4a LINE L1 -2248 5560 5433 300 364 68 15 chr6 162091118 162091250 -20323992 - L2 LINE L2 0 3272 3134 1718 164 3 3 chr6 162091472 162091777 -20323465 - L1MA6 LINE L1 0 6300 5996 2175 124 7 0 chr6 162095514 162095812 -20319430 - AluSx SINE Alu -12 300 1 1584 255 117 83 chr6 162096735 162097124 -20318118 + L2 LINE L2 1913 2288 -1026 1956 158 7 0 chr6 162097124 162097422 -20317820 + AluJb SINE Alu 1 300 -12 1584 255 117 83 chr6 162097422 162097816 -20317426 + L2 LINE L2 2288 2728 -586 2161 129 10 0 chr6 162097816 162098125 -20317117 - AluSx SINE Alu 0 312 1 1584 255 117 83 chr6 162098125 162098180 -20317062 + L2 LINE L2 2728 2780 -534 706 295 114 43 chr6 162098216 162098446 -20316796 + L2 LINE L2 2889 3160 -153 1809 114 63 0 chr6 162098446 162098700 -20316542 - AluSg SINE Alu -16 294 25 706 295 114 43 chr6 162098700 162098862 -20316380 + L2 LINE L2 3160 3309 -4 2456 80 0 6 chr6 162098902 162099214 -20316028 + AluSx SINE Alu 1 310 -2 412 283 44 56 chr6 162100591 162100673 -20314569 - MIR3 SINE MIR 0 208 127 2286 95 13 7 chr6 162100673 162100978 -20314264 + AluSx SINE Alu 1 307 -5 412 283 44 56 chr6 162100978 162101075 -20314167 - MIR3 SINE MIR -81 127 31 2296 93 17 0 chr6 162101189 162101489 -20313753 + AluSc SINE Alu 1 305 -4 1265 8 0 0 chr6 162101586 162101718 -20313524 + L1PA3 LINE L1 6019 6150 -5 419 40 0 0 chr6 162102059 162102109 -20313133 - MADE1 DNA Mariner 0 80 31 570 234 138 16 chr6 162103693 162103881 -20311361 + MIR SINE MIR 52 262 0 224 349 105 0 chr6 162103893 162103979 -20311263 + MIR3 SINE MIR 62 156 -52 914 224 17 0 chr6 162103983 162104162 -20311080 - MER5A DNA MER1_type 0 189 8 519 248 179 0 chr6 162104187 162104332 -20310910 + MER5B DNA MER1_type 3 173 -5 538 243 44 40 chr6 162104661 162104837 -20310405 + MIR SINE MIR 40 216 -46 67 64 0 7 chr6 162104858 162104876 -20310366 + AT_rich Low_complexity Low_complexity 1 18 -122 1817 149 85 0 chr6 162104876 162105157 -20310085 + AluSx SINE Alu 1 305 -7 67 64 0 7 chr6 162105157 162105279 -20309963 + AT_rich Low_complexity Low_complexity 18 140 0 673 130 26 35 chr6 162106301 162106416 -20308826 + MER81 DNA DNA 1 114 0 1719 192 23 8 chr6 162107154 162107539 -20307703 - Charlie5 DNA MER1_type 0 2624 2234 535 119 81 76 chr6 162107536 162107674 -20307568 - Charlie5 DNA MER1_type -2490 122 1 * 841 174 0 0 chr6 162108567 162108705 -20306537 + AluSg/x SINE Alu 175 312 0 321 247 72 60 chr6 162109444 162109610 -20305632 - MLT1J2 LTR MaLR -3 447 280 * 476 194 21 11 chr6 162109606 162109699 -20305543 - Charlie4a DNA MER1_type -7 501 408 * 710 240 108 36 chr6 162109695 162109945 -20305297 - Charlie4a DNA MER1_type -208 300 33 458 325 49 45 chr6 162109961 162110207 -20305035 - MLT1J2 LTR MaLR -167 283 37 3232 192 103 24 chr6 162110223 162111015 -20304227 + L1MC4 LINE L1 7187 8041 -1 412 241 8 60 chr6 162111804 162111937 -20303305 - L2 LINE L2 -906 2408 2283 1296 117 0 0 chr6 162112066 162112237 -20303005 + AluSg/x SINE Alu 127 297 -15 23 33 0 0 chr6 162112588 162112618 -20302624 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr6 162112669 162112720 -20302522 + AT_rich Low_complexity Low_complexity 1 51 0 231 249 77 105 chr6 162113728 162114041 -20301201 + L1ME4a LINE L1 5816 6119 -2 2643 167 21 32 chr6 162115163 162115635 -20299607 + MLT1C LTR MaLR 1 467 0 1528 136 35 0 chr6 162117409 162117637 -20297605 - MER46A DNA MER2_type 0 236 1 2487 49 7 13 chr6 162117660 162117966 -20297276 + AluY SINE Alu 1 304 -7 2333 102 0 3 chr6 162118750 162119064 -20296178 + AluSq SINE Alu 1 313 0 2060 122 0 3 chr6 162119296 162119613 -20295629 - AluSq SINE Alu 0 316 1 2079 129 0 0 chr6 162119872 162120189 -20295053 + AluSq SINE Alu 1 313 0 1317 165 78 8 chr6 162120342 162120597 -20294645 + L1MB4 LINE L1 5893 6165 -15 2184 122 0 0 chr6 162120602 162120897 -20294345 - AluSx SINE Alu -14 298 4 3130 73 7 0 chr6 162121135 162121557 -20293685 - L1PA7 LINE L1 -838 5308 4884 3462 84 4 0 chr6 162121557 162122009 -20293233 + L1PA7 LINE L1 5329 5782 -390 954 17 0 17 chr6 162122009 162122112 -20293130 + AluYa5/8 SINE Alu 196 298 -12 2754 55 0 148 chr6 162122112 162122564 -20292678 + L1PA7 LINE L1 5769 6153 -1 954 17 0 17 chr6 162122564 162122577 -20292665 + AluYa5/8 SINE Alu 298 310 0 644 216 58 18 chr6 162122640 162122811 -20292431 - MER5B DNA MER1_type 0 178 1 336 305 0 9 chr6 162123258 162123363 -20291879 - MIR3 SINE MIR -14 194 91 1125 218 96 35 chr6 162123363 162123707 -20291535 - MLT1A1 LTR MaLR 0 365 1 267 304 0 43 chr6 162123707 162123776 -20291466 - MIR SINE MIR -113 95 30 349 290 154 38 chr6 162124568 162124861 -20290381 - L1ME LINE L1 -298 5823 5497 246 224 35 0 chr6 162125334 162125392 -20289850 + MER91 DNA MER1_type 45 104 -92 3177 132 152 101 chr6 162125768 162126326 -20288916 - L1MC3 LINE L1 -7 7778 7095 238 280 13 0 chr6 162126326 162126401 -20288841 - MLT1F1 LTR MaLR -442 125 50 3177 132 152 101 chr6 162126401 162126580 -20288662 - L1MC3 LINE L1 -690 7095 6926 1620 193 26 46 chr6 162127027 162127375 -20287867 - MLT2C1 LTR ERVL -56 341 1 420 213 13 0 chr6 162127544 162127619 -20287623 - MER5A DNA MER1_type -111 78 3 267 292 0 14 chr6 162127894 162127966 -20287276 + MIR SINE MIR 85 155 -107 4641 173 2 17 chr6 162128927 162129006 -20286236 - L1P LINE L1 -1190 4956 4877 2122 125 3 0 chr6 162129006 162129303 -20285939 - AluSx SINE Alu -14 298 1 4641 173 2 17 chr6 162129303 162130112 -20285130 - L1P LINE L1 -1269 4877 4081 7059 82 10 0 chr6 162130112 162131316 -20283926 + L1PA13 LINE L1 4949 6161 -2 578 162 34 19 chr6 162131319 162131462 -20283780 + L1MC4a LINE L1 5483 5630 -534 2995 91 0 0 chr6 162133373 162133737 -20281505 + THE1B LTR MaLR 1 364 0 311 162 0 44 chr6 162134094 162134112 -20281130 - L2 LINE L2 0 3272 3255 7387 136 41 18 chr6 162134112 162134615 -20280627 - Tigger3b DNA MER2_type -1797 1231 741 1805 176 3 25 chr6 162134615 162134933 -20280309 - AluJo SINE Alu -1 311 1 7387 136 41 18 chr6 162134933 162135085 -20280157 - Tigger3b DNA MER2_type -2287 741 594 2395 78 0 3 chr6 162135085 162135381 -20279861 + AluY SINE Alu 3 297 -14 7387 136 41 18 chr6 162135381 162135926 -20279316 - Tigger3b DNA MER2_type -2434 594 2 311 162 0 44 chr6 162135926 162135975 -20279267 - L2 LINE L2 -17 3255 3208 299 271 172 0 chr6 162137249 162137371 -20277871 - MIR SINE MIR -52 210 68 2169 122 0 3 chr6 162137399 162137703 -20277539 + AluSx SINE Alu 1 303 -9 711 232 17 59 chr6 162137888 162138062 -20277180 + L1MC4a LINE L1 5654 5818 -1990 2164 61 3 61 chr6 162138062 162138394 -20276848 + AluY SINE Alu 1 315 0 711 232 17 59 chr6 162138394 162138455 -20276787 + L1MC4a LINE L1 5818 5880 -1928 244 32 0 0 chr6 162138792 162138823 -20276419 - MADE1 DNA Mariner -15 65 35 398 78 62 0 chr6 162138826 162138890 -20276352 + MADE1 DNA Mariner 13 80 0 389 304 48 54 chr6 162141352 162141520 -20273722 + MIR3 SINE MIR 5 171 -37 522 343 39 71 chr6 162141704 162142142 -20273100 - L2 LINE L2 -1 3271 2848 273 160 0 0 chr6 162142215 162142265 -20272977 + L2 LINE L2 3263 3312 -1 * 572 320 29 14 chr6 162142264 162142542 -20272700 - L2 LINE L2 -995 2319 2038 644 178 85 8 chr6 162142626 162142783 -20272459 + MLT1B LTR MaLR 21 191 -183 468 169 34 0 chr6 162142812 162142901 -20272341 + MLT1B LTR MaLR 283 374 0 270 0 0 0 chr6 162143246 162143276 -20271966 + (TG)n Simple_repeat Simple_repeat 2 31 0 889 229 10 15 chr6 162144155 162144356 -20270886 + L1ME2 LINE L1 5955 6154 -10 2266 103 0 10 chr6 162144901 162145202 -20270040 + AluSq SINE Alu 1 298 -15 256 320 74 44 chr6 162145295 162145551 -20269691 - L2 LINE L2 -10 3303 3010 221 245 20 0 chr6 162146546 162146595 -20268647 + CT-rich Low_complexity Low_complexity 3 52 0 318 148 0 0 chr6 162148720 162148774 -20266468 + (TA)n Simple_repeat Simple_repeat 2 55 0 188 194 0 0 chr6 162149227 162149263 -20265979 - MIR SINE MIR -65 143 108 335 257 102 130 chr6 162150081 162150603 -20264639 + L1M2 LINE L1 462 968 -5881 218 32 32 0 chr6 162150605 162150636 -20264606 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chr6 162150691 162150719 -20264523 + GC_rich Low_complexity Low_complexity 1 28 0 900 196 40 16 chr6 162152774 162153024 -20262218 - MER112 DNA MER1_type 0 256 1 242 175 18 18 chr6 162155550 162155607 -20259635 + (ATG)n Simple_repeat Simple_repeat 3 59 0 281 250 11 45 chr6 162157586 162157674 -20257568 + L2 LINE L2 3188 3272 0 2840 231 28 3 chr6 162157843 162158479 -20256763 - MER82 DNA MER2_type 0 653 2 554 264 130 5 chr6 162158481 162158689 -20256553 + MIR SINE MIR 4 237 -25 208 214 0 24 chr6 162158873 162158915 -20256327 - L2 LINE L2 -16 3297 3257 823 171 14 0 chr6 162158956 162159096 -20256146 + FLAM_C SINE Alu 1 142 -1 217 296 74 25 chr6 162159371 162159452 -20255790 - MER5B DNA MER1_type -29 149 65 282 181 12 24 chr6 162160988 162161071 -20254171 + (TA)n Simple_repeat Simple_repeat 1 82 0 3516 128 15 10 chr6 162161519 162162042 -20253200 + MER1A DNA MER1_type 1 526 -1 261 284 90 125 chr6 162162093 162162414 -20252828 - L2 LINE L2 0 3272 2963 646 308 40 24 chr6 162162556 162162809 -20252433 - MIR SINE MIR -2 260 4 578 278 30 18 chr6 162163170 162163339 -20251903 - MIR3 SINE MIR -2 206 36 873 130 118 0 chr6 162165211 162165380 -20249862 - MER53 DNA DNA 0 189 1 189 0 0 0 chr6 162165645 162165666 -20249576 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 7520 37 0 0 chr6 162165666 162166814 -20248428 - L1PA5 LINE L1 0 6154 5007 1597 107 0 5 chr6 162166920 162167135 -20248107 + AluSg/x SINE Alu 87 300 -10 2261 123 3 0 chr6 162167824 162168134 -20247108 + AluSx SINE Alu 1 311 -1 433 222 0 0 chr6 162168925 162169006 -20246236 - L2 LINE L2 0 3313 3233 549 289 58 11 chr6 162169045 162169235 -20246007 - L2 LINE L2 -262 3051 2853 1706 121 42 106 chr6 162169237 162169567 -20245675 + AluJb SINE Alu 2 310 -2 423 360 180 5 chr6 162169783 162170005 -20245237 - MIR SINE MIR 0 262 2 395 290 22 7 chr6 162170041 162170179 -20245063 + ERVL LTR ERVL 4954 5093 -671 462 16 16 0 chr6 162170784 162170845 -20244397 - L1P LINE L1 -1397 4749 4688 2264 85 10 3 chr6 162170945 162171281 -20243961 + AluSc SINE Alu 14 351 0 23 54 0 0 chr6 162173043 162173080 -20242162 + GC_rich Low_complexity Low_complexity 1 37 0 215 253 24 0 chr6 162173647 162173730 -20241512 + (TA)n Simple_repeat Simple_repeat 1 85 0 745 228 124 15 chr6 162174023 162174225 -20241017 - MER58A DNA MER1_type 0 224 1 1915 108 0 0 chr6 162174846 162175096 -20240146 + AluSc SINE Alu 6 255 -54 251 167 13 51 chr6 162175201 162175279 -20239963 - L1MC5 LINE L1 -215 7746 7672 260 224 119 0 chr6 162175334 162175401 -20239841 - L2 LINE L2 -780 2534 2460 208 174 14 116 chr6 162175569 162175638 -20239604 - MIR SINE MIR -111 151 90 236 264 0 0 chr6 162176946 162176999 -20238243 + CT-rich Low_complexity Low_complexity 2 54 0 222 360 84 44 chr6 162177962 162178165 -20237077 + L2 LINE L2 2701 2911 -403 2268 101 3 0 chr6 162178503 162178799 -20236443 - AluSx SINE Alu -15 297 1 268 365 103 26 chr6 162178820 162179247 -20235995 - L2 LINE L2 -618 2696 2237 373 75 50 12 chr6 162179795 162179875 -20235367 + CT-rich Low_complexity Low_complexity 1 83 0 346 255 31 10 chr6 162179875 162179973 -20235269 - MLT1C LTR MaLR -231 236 137 716 159 16 0 chr6 162180015 162180141 -20235101 - MLT1C LTR MaLR -339 128 1 2334 106 0 0 chr6 162180479 162180772 -20234470 - AluSg SINE Alu -17 293 1 480 279 131 89 chr6 162180838 162181427 -20233815 - L2 LINE L2 -56 3257 2626 4473 124 3 43 chr6 162181645 162182289 -20232953 - L1PA2 LINE L1 -1 6154 5537 2943 16 0 0 chr6 162182289 162182799 -20232443 + L1PA2 LINE L1 5022 5531 -624 372 359 74 43 chr6 162183966 162184317 -20230925 + L2 LINE L2 2910 3271 -1 1605 43 0 0 chr6 162184649 162184856 -20230386 - L1P3 LINE L1 -332 5822 5616 * 4051 74 38 42 chr6 162184854 162185405 -20229837 + L1P3 LINE L1 4740 5290 -864 264 30 0 0 chr6 162185405 162185438 -20229804 + (CA)n Simple_repeat Simple_repeat 2 34 0 4051 74 38 42 chr6 162185438 162185756 -20229486 + L1P3 LINE L1 5290 5608 -546 2673 142 11 80 chr6 162185942 162186108 -20229134 - L1PA16 LINE L1 -3 6163 5987 2363 107 0 0 chr6 162186108 162186418 -20228824 - AluSx SINE Alu -2 310 1 2673 142 11 80 chr6 162186418 162186800 -20228442 - L1PA16 LINE L1 -179 5987 5653 28 48 0 0 chr6 162188400 162188442 -20226800 + AT_rich Low_complexity Low_complexity 1 42 0 455 273 58 7 chr6 162188527 162188666 -20226576 + MIR SINE MIR 47 192 -70 1943 133 0 10 chr6 162188789 162189090 -20226152 - AluSx SINE Alu -14 298 1 263 50 25 0 chr6 162189830 162189870 -20225372 + MADE1 DNA Mariner 40 80 0 1895 167 27 0 chr6 162190983 162191318 -20223924 - MER2 DNA MER2_type 0 344 1 285 100 0 0 chr6 162191337 162191387 -20223855 + (CA)n Simple_repeat Simple_repeat 2 51 0 2226 113 0 7 chr6 162191401 162191703 -20223539 - AluSx SINE Alu -10 302 3 386 207 86 0 chr6 162191737 162191853 -20223389 + L1ME4a LINE L1 5990 6115 -6 1502 138 35 11 chr6 162194097 162194380 -20220862 - L1MA9 LINE L1 -30 6282 5993 188 265 0 12 chr6 162194443 162194526 -20220716 + (TA)n Simple_repeat Simple_repeat 2 83 0 713 128 26 0 chr6 162194526 162194643 -20220599 + L1MA8 LINE L1 5781 5900 -391 4439 32 2 2 chr6 162196048 162196611 -20218631 - L1P LINE L1 -1471 4675 4113 7480 36 5 0 chr6 162196611 162198021 -20217221 + L1PA5 LINE L1 4764 6147 -7 444 258 0 8 chr6 162198144 162198272 -20216970 - L1MC4a LINE L1 -1898 5910 5784 240 352 16 24 chr6 162198585 162198710 -20216532 - MIR3 SINE MIR -7 201 78 1108 82 57 0 chr6 162199264 162199423 -20215819 - L1PA7 LINE L1 0 6154 5987 459 309 100 14 chr6 162200253 162200463 -20214779 + MIR SINE MIR 19 246 -16 21 0 0 0 chr6 162201371 162201392 -20213850 + AT_rich Low_complexity Low_complexity 1 21 0 497 326 125 44 chr6 162202512 162203443 -20211799 - L2 LINE L2 -17 3255 2246 1209 21 0 0 chr6 162204174 162204316 -20210926 - L1PA2 LINE L1 0 6155 6014 1973 163 0 16 chr6 162204865 162205178 -20210064 - AluJo SINE Alu -4 308 1 977 351 34 13 chr6 162205955 162206571 -20208671 - L2 LINE L2 -981 2333 1705 455 366 0 0 chr6 162206680 162206871 -20208371 - MIR SINE MIR 0 262 72 2495 72 19 21 chr6 162207088 162207465 -20207777 - SVA Other Other -689 697 322 4462 155 46 8 chr6 162207466 162209313 -20205929 - L1PBa LINE L1 -4755 2108 3 596 340 91 0 chr6 162209893 162210125 -20205117 + MIR SINE MIR 5 257 -5 1120 43 7 0 chr6 162213274 162213412 -20201830 - MER85 DNA T2_type 0 139 1 688 284 119 27 chr6 162213991 162214741 -20200501 - L1M4 LINE L1 -872 5274 4456 25 0 0 0 chr6 162214810 162214835 -20200407 + AT_rich Low_complexity Low_complexity 1 25 0 334 234 62 23 chr6 162214897 162215025 -20200217 - L1ME4a LINE L1 -262 5859 5727 402 217 63 28 chr6 162215357 162215500 -20199742 + L1ME4a LINE L1 5974 6121 0 415 169 0 0 chr6 162216482 162216553 -20198689 + tRNA-Ile-ATT tRNA tRNA 4 74 -3 583 189 49 0 chr6 162217451 162217573 -20197669 + MER3 DNA MER1_type 4 131 -78 181 54 0 54 chr6 162217573 162217610 -20197632 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 233 208 0 0 chr6 162217611 162217659 -20197583 - MER3 DNA MER1_type -121 88 41 195 220 0 102 chr6 162217903 162217962 -20197280 + MIR SINE MIR 114 166 -96 296 228 35 69 chr6 162218132 162218180 -20197062 + Charlie7 DNA MER1_type 2473 2521 -91 1956 146 36 12 chr6 162218180 162218509 -20196733 - MER1B DNA MER1_type 0 337 1 296 228 35 69 chr6 162218509 162218605 -20196637 + Charlie7 DNA MER1_type 2521 2612 0 271 274 30 82 chr6 162219058 162219193 -20196049 + MER5B DNA MER1_type 59 175 -3 885 224 10 0 chr6 162219270 162219471 -20195771 - MER3 DNA MER1_type 0 209 7 2872 60 0 0 chr6 162220074 162220470 -20194772 + L1PA8 LINE L1 5807 6202 0 267 317 205 10 chr6 162221943 162222148 -20193094 + MIR SINE MIR 3 247 -15 1017 90 0 28 chr6 162222423 162222567 -20192675 + AluSc SINE Alu 169 308 -1 264 59 0 0 chr6 162223177 162223211 -20192031 + (TC)n Simple_repeat Simple_repeat 2 35 0 213 208 42 0 chr6 162224099 162224147 -20191095 - L2 LINE L2 -6 3307 3258 21 0 0 0 chr6 162224822 162224843 -20190399 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr6 162225265 162225315 -20189927 + AT_rich Low_complexity Low_complexity 1 50 0 332 307 132 26 chr6 162226445 162226559 -20188683 - L2 LINE L2 0 3272 3147 230 220 119 0 chr6 162226864 162226923 -20188319 - L2 LINE L2 -6 3307 3242 224 357 24 0 chr6 162227103 162227187 -20188055 - L2 LINE L2 -219 3053 2968 300 53 0 0 chr6 162227230 162227268 -20187974 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 21 0 0 0 chr6 162227477 162227498 -20187744 + AT_rich Low_complexity Low_complexity 1 21 0 2965 158 48 3 chr6 162227681 162228262 -20186980 - L1MC3 LINE L1 -32 7753 7147 5145 100 4 6 chr6 162228264 162228997 -20186245 - L1PA10 LINE L1 0 6168 5437 1652 148 0 0 chr6 162229330 162229613 -20185629 + L1P LINE L1 4729 5011 -1135 7372 188 45 33 chr6 162229613 162231325 -20183917 - L1MC3 LINE L1 -629 7156 5421 2235 105 3 0 chr6 162231325 162231620 -20183622 - AluSg SINE Alu -14 296 1 7372 188 45 33 chr6 162231620 162231690 -20183552 - L1MC3 LINE L1 -2364 5421 5353 23 0 0 0 chr6 162231690 162231713 -20183529 + AT_rich Low_complexity Low_complexity 1 23 0 8220 223 27 44 chr6 162231713 162232604 -20182638 - L1PA14 LINE L1 -3 6158 5254 2239 108 0 0 chr6 162232604 162232890 -20182352 + AluSq SINE Alu 1 286 -27 258 32 0 0 chr6 162232890 162232921 -20182321 + (CATA)n Simple_repeat Simple_repeat 2 32 0 8220 223 27 44 chr6 162232921 162234994 -20180248 - L1PA14 LINE L1 -906 5255 3149 1962 146 7 19 chr6 162234994 162235303 -20179939 - AluSx SINE Alu -7 305 1 8220 223 27 44 chr6 162235303 162235431 -20179811 - L1PA14 LINE L1 -3012 3149 3020 2265 178 14 24 chr6 162235431 162235852 -20179390 - MER47B DNA MER2_type 0 418 2 8220 223 27 44 chr6 162235852 162236745 -20178497 - L1PA14 LINE L1 -3141 3020 2242 982 64 6 64 chr6 162236756 162236913 -20178329 + L1PA8 LINE L1 6022 6169 -3 299 97 258 0 chr6 162236931 162236993 -20178249 + AluSq SINE Alu 120 197 -106 1507 215 94 45 chr6 162237010 162237262 -20177980 - L1MCa LINE L1 -3898 2528 2290 2302 90 3 7 chr6 162237262 162237563 -20177679 - AluSp SINE Alu -13 300 1 1507 215 94 45 chr6 162237563 162238015 -20177227 - L1MCa LINE L1 -4136 2290 1785 1901 173 10 0 chr6 162239369 162239676 -20175566 - AluJo SINE Alu -2 310 1 635 262 62 57 chr6 162239820 162240030 -20175212 + MIR SINE MIR 20 230 -32 21 0 0 0 chr6 162240308 162240329 -20174913 + AT_rich Low_complexity Low_complexity 1 21 0 209 349 92 9 chr6 162241080 162241189 -20174053 - L2 LINE L2 -1 3271 3154 236 378 34 17 chr6 162241825 162241944 -20173298 - L2 LINE L2 -14 3258 3138 6412 51 2 1 chr6 162242144 162242946 -20172296 + L1PA7 LINE L1 5352 6154 0 321 257 140 14 chr6 162243012 162243234 -20172008 - L2 LINE L2 -351 2963 2714 387 303 66 0 chr6 162243263 162243385 -20171857 - L2 LINE L2 -202 3070 2941 204 340 164 29 chr6 162243419 162243731 -20171511 - L2 LINE L2 -913 2401 2048 2301 121 28 6 chr6 162244457 162244813 -20170429 - THE1B LTR MaLR 0 364 1 259 269 59 50 chr6 162244841 162244960 -20170282 - L2 LINE L2 -77 3236 3117 1882 127 0 0 chr6 162245373 162245633 -20169609 - AluSg1 SINE Alu -49 260 1 33 0 0 0 chr6 162246213 162246246 -20168996 + AT_rich Low_complexity Low_complexity 1 33 0 986 163 0 0 chr6 162246246 162246399 -20168843 - FRAM SINE Alu -23 153 1 192 341 0 44 chr6 162247254 162247345 -20167897 - L2 LINE L2 0 3272 3186 3208 176 67 12 chr6 162247530 162248219 -20167023 + L1MB2 LINE L1 5445 6171 0 388 140 0 0 chr6 162248308 162248365 -20166877 - L2 LINE L2 -1 3271 3215 288 183 50 17 chr6 162249099 162249159 -20166083 - L2 LINE L2 -1 3312 3251 256 343 115 21 chr6 162249307 162249829 -20165413 + L2 LINE L2 1535 2105 -1209 1351 209 30 37 chr6 162249958 162250254 -20164988 - AluJo SINE Alu -8 294 1 212 0 0 35 chr6 162252086 162252115 -20163127 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2382 93 0 0 chr6 162252249 162252559 -20162683 - AluSg SINE Alu 0 310 1 211 220 0 0 chr6 162252937 162252987 -20162255 + T-rich Low_complexity Low_complexity 1 50 0 1610 138 4 0 chr6 162253721 162254010 -20161232 + AluSx SINE Alu 43 332 0 797 191 0 0 chr6 162255060 162255201 -20160041 - MLT1B LTR MaLR 0 390 250 1075 146 0 12 chr6 162255201 162255366 -20159876 - AluSc SINE Alu -16 293 131 723 99 10 0 chr6 162255472 162255573 -20159669 - AluS SINE Alu -211 102 1 1002 181 80 25 chr6 162255575 162255812 -20159430 - MLT1B LTR MaLR -130 260 11 1771 206 17 3 chr6 162255817 162256177 -20159065 - MLT1B LTR MaLR -16 374 10 271 224 17 0 chr6 162257011 162257069 -20158173 - MLT1A2 LTR MaLR -71 303 245 196 240 179 89 chr6 162257086 162257265 -20157977 + L2 LINE L2 3119 3313 0 181 380 94 29 chr6 162257267 162257438 -20157804 - L2 LINE L2 0 3272 3091 243 316 36 58 chr6 162257620 162257730 -20157512 + MIR SINE MIR 49 158 -104 2001 110 37 0 chr6 162257730 162258034 -20157208 + AluSx SINE Alu 3 316 0 243 316 36 58 chr6 162258034 162258061 -20157181 + MIR SINE MIR 158 184 -78 2179 134 0 0 chr6 162258904 162259202 -20156040 + AluSx SINE Alu 1 298 -14 27 81 0 0 chr6 162259445 162259507 -20155735 + AT_rich Low_complexity Low_complexity 1 62 0 180 333 0 0 chr6 162259770 162259815 -20155427 - MIR3 SINE MIR -48 160 116 13396 181 23 20 chr6 162259933 162262223 -20153019 - L1 LINE L1 -1098 6467 4057 2088 128 0 7 chr6 162262223 162262529 -20152713 - AluSx SINE Alu -8 304 1 13396 181 23 20 chr6 162262529 162263284 -20151958 - L1 LINE L1 -3508 4057 3306 254 274 230 15 chr6 162263673 162263808 -20151434 - MIR3 SINE MIR -21 187 24 32 0 0 0 chr6 162264071 162264103 -20151139 + AT_rich Low_complexity Low_complexity 1 32 0 223 313 36 0 chr6 162264252 162264335 -20150907 + MIR SINE MIR 57 142 -120 2138 85 3 14 chr6 162265049 162265342 -20149900 + AluY SINE Alu 1 290 -21 1139 146 0 0 chr6 162265342 162265507 -20149735 + AluSg/x SINE Alu 134 298 -14 49 0 0 0 chr6 162265602 162265651 -20149591 + AT_rich Low_complexity Low_complexity 1 49 0 525 211 74 16 chr6 162265703 162265893 -20149349 - MER33 DNA MER1_type -94 230 30 213 191 43 0 chr6 162265980 162266027 -20149215 - L2 LINE L2 -545 2769 2721 4676 176 11 9 chr6 162266109 162267436 -20147806 - L1P5 LINE L1 -566 5585 4256 6770 227 15 12 chr6 162267539 162269774 -20145468 - L1 LINE L1 -2477 3669 1435 3009 27 0 0 chr6 162269774 162270106 -20145136 - SVA Other Other -2 1384 1053 561 266 189 0 chr6 162320106 162320275 -20094967 - L2 LINE L2 -1331 1983 1783 1131 294 144 12 chr6 162320278 162320867 -20094375 - L2 LINE L2 -1691 1623 957 220 82 82 33 chr6 162321337 162321398 -20093844 + (CAAAC)n Simple_repeat Simple_repeat 1 64 0 345 155 113 52 chr6 162321445 162321542 -20093700 - HAL1 LINE L1 -1075 1432 1330 341 216 17 35 chr6 162321572 162321688 -20093554 - HAL1 LINE L1 -1359 1148 1035 21 36 0 0 chr6 162321688 162321716 -20093526 + AT_rich Low_complexity Low_complexity 1 28 0 354 282 53 113 chr6 162321749 162322015 -20093227 - HAL1 LINE L1 -1502 1005 756 273 311 71 34 chr6 162322024 162322262 -20092980 - HAL1 LINE L1 -1816 691 445 5139 184 17 5 chr6 162322265 162323405 -20091837 - L1 LINE L1 -805 5341 4189 2427 79 0 3 chr6 162323409 162323713 -20091529 - AluY SINE Alu -8 303 1 344 279 30 36 chr6 162323812 162323977 -20091265 - L1ME4a LINE L1 -89 6032 5869 283 286 67 28 chr6 162324450 162324628 -20090614 - HAL1b LINE L1 -416 932 748 368 307 62 22 chr6 162324895 162325263 -20089979 - HAL1 LINE L1 -880 1627 1245 6646 51 6 1 chr6 162325959 162326834 -20088408 - L1PA7 LINE L1 -2 6152 5274 3325 88 0 4 chr6 162326829 162327320 -20087922 + L1PA7 LINE L1 4779 5267 -879 * 29 0 0 0 chr6 162328012 162328041 -20087201 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr6 162328614 162328637 -20086605 + (TTG)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr6 162328683 162328707 -20086535 + AT_rich Low_complexity Low_complexity 1 24 0 2191 95 0 3 chr6 162329968 162330273 -20084969 - L1PB1 LINE L1 -1 6150 5847 4545 214 8 3 chr6 162330289 162331387 -20083855 + L1 LINE L1 2849 3952 -2194 2203 143 60 26 chr6 162331438 162331952 -20083290 - MLT2A2 LTR ERVL 0 554 1 456 215 62 23 chr6 162331963 162332093 -20083149 - MIR SINE MIR -65 197 63 634 188 273 0 chr6 162332705 162332881 -20082361 - MER58A DNA MER1_type 0 224 1 447 298 166 24 chr6 162333029 162333234 -20082008 - MIR SINE MIR -8 254 21 294 263 147 64 chr6 162333269 162333425 -20081817 + MIR SINE MIR 20 188 -74 1944 142 3 45 chr6 162334169 162334589 -20080653 - MLT2C2 LTR ERVL 0 397 3 206 178 22 0 chr6 162335625 162335670 -20079572 + (TA)n Simple_repeat Simple_repeat 1 46 0 317 258 40 8 chr6 162335751 162335875 -20079367 + L1MEd LINE L1 3 130 -5989 385 314 45 58 chr6 162335995 162336218 -20079024 + L1MEd LINE L1 319 538 -5581 2136 131 0 0 chr6 162336284 162336589 -20078653 + AluSx SINE Alu 1 305 -7 231 36 0 0 chr6 162336723 162336751 -20078491 + (A)n Simple_repeat Simple_repeat 1 28 0 608 277 56 44 chr6 162336952 162337581 -20077661 + L1MEd LINE L1 898 1629 -861 1070 161 5 10 chr6 162337848 162338047 -20077195 - MLT1B LTR MaLR -192 198 1 2246 122 0 0 chr6 162339477 162339773 -20075469 - AluSg SINE Alu -14 296 1 211 163 0 82 chr6 162340840 162340889 -20074353 - L2 LINE L2 -1 3312 3268 1455 151 27 73 chr6 162341161 162341260 -20073982 - Charlie5 DNA MER1_type 0 2624 2522 1766 74 0 0 chr6 162341260 162341475 -20073767 - AluY SINE Alu -16 295 81 1455 151 27 73 chr6 162341475 162341786 -20073456 - Charlie5 DNA MER1_type -102 2522 2233 526 198 26 0 chr6 162341790 162341906 -20073336 - Charlie5 DNA MER1_type -2493 119 1 238 324 104 35 chr6 162343655 162343828 -20071414 + MIR SINE MIR 20 204 -58 2403 107 0 7 chr6 162343995 162344305 -20070937 + AluSx SINE Alu 1 308 -4 2033 112 3 7 chr6 162344445 162344740 -20070502 - AluSx SINE Alu -18 294 1 437 179 123 62 chr6 162344939 162345101 -20070141 - MER96B DNA MER1_type? 0 417 246 237 211 0 0 chr6 162345660 162345717 -20069525 + (TG)n Simple_repeat Simple_repeat 1 57 0 1799 117 0 0 chr6 162346036 162346276 -20068966 - AluSx SINE Alu -18 294 55 306 158 53 0 chr6 162346423 162346480 -20068762 - AluJ/FLAM SINE Alu -241 61 2 3321 107 4 10 chr6 162346781 162347265 -20067977 - MER1A DNA MER1_type 0 529 49 1429 89 0 28 chr6 162347301 162347514 -20067728 + L1PA13 LINE L1 5952 6158 -5 237 220 0 0 chr6 162347547 162347597 -20067645 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 26 93 0 0 chr6 162348843 162348918 -20066324 + AT_rich Low_complexity Low_complexity 1 75 0 519 265 110 16 chr6 162349174 162349419 -20065823 - MLT1J2 LTR MaLR -119 331 64 326 267 123 87 chr6 162350693 162350888 -20064354 + L2 LINE L2 2985 3186 -86 1612 176 41 0 chr6 162350920 162351239 -20064003 - L1MB3 LINE L1 -8 6175 5844 486 250 0 0 chr6 162352500 162352604 -20062638 - MIR SINE MIR -108 154 51 811 203 27 53 chr6 162352731 162352938 -20062304 - MIR SINE MIR -1 261 57 380 236 22 0 chr6 162352979 162353068 -20062174 + MIR3 SINE MIR 97 187 -21 188 259 37 62 chr6 162353191 162353272 -20061970 + L2 LINE L2 3230 3308 -5 522 174 0 0 chr6 162354058 162354167 -20061075 + (TCCA)n Simple_repeat Simple_repeat 1 109 0 767 289 20 24 chr6 162354554 162354803 -20060439 - MIR SINE MIR -2 260 13 243 0 22 67 chr6 162355842 162355887 -20059355 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 27 0 0 0 chr6 162356010 162356037 -20059205 + AT_rich Low_complexity Low_complexity 1 27 0 377 231 63 28 chr6 162358571 162358714 -20056528 + Charlie4 DNA MER1_type 1811 1958 -3 355 301 53 15 chr6 162358851 162358984 -20056258 - MIR SINE MIR -13 249 112 255 269 15 0 chr6 162358992 162359059 -20056183 - L2 LINE L2 -1 3312 3245 225 305 17 0 chr6 162359046 162359105 -20056137 - MIR SINE MIR -142 120 61 * 310 185 0 0 chr6 162359679 162359733 -20055509 + MLT1C LTR MaLR 413 466 -1 1129 204 156 58 chr6 162359921 162360337 -20054905 - MSTB2 LTR MaLR 0 457 1 333 0 0 0 chr6 162360957 162360994 -20054248 + (TG)n Simple_repeat Simple_repeat 1 37 0 288 0 0 0 chr6 162362112 162362144 -20053098 + (TG)n Simple_repeat Simple_repeat 1 32 0 315 278 159 13 chr6 162364361 162364512 -20050730 - MIR SINE MIR -6 256 84 1911 194 27 45 chr6 162368222 162368772 -20046470 + L1ME1 LINE L1 5368 5907 -259 421 261 51 7 chr6 162369490 162369628 -20045614 + MIR SINE MIR 105 248 -14 380 214 0 10 chr6 162369629 162369727 -20045515 + CT-rich Low_complexity Low_complexity 1 97 0 291 28 0 0 chr6 162370789 162370825 -20044417 + (CA)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr6 162370824 162370844 -20044398 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 241 265 44 0 chr6 162370975 162371043 -20044199 + MIR3 SINE MIR 119 189 -19 588 327 28 24 chr6 162371170 162371424 -20043818 - MIR SINE MIR 0 262 8 202 168 42 21 chr6 162371937 162372032 -20043210 + CT-rich Low_complexity Low_complexity 5 101 0 371 130 65 26 chr6 162372236 162372313 -20042929 - L1MA5A LINE L1 -3 6294 6215 888 165 0 146 chr6 162372599 162372672 -20042570 - MER20 DNA MER1_type 0 219 137 2167 122 45 11 chr6 162372672 162373024 -20042218 + THE1B LTR MaLR 1 364 0 888 165 0 146 chr6 162373024 162373204 -20042038 - MER20 DNA MER1_type -82 137 3 241 361 93 42 chr6 162373218 162373650 -20041592 + L2 LINE L2 2308 2761 -553 1381 113 51 0 chr6 162373652 162373847 -20041395 + AluSp SINE Alu 96 300 -13 2374 121 25 0 chr6 162374716 162375071 -20040171 + THE1B LTR MaLR 1 364 0 30 93 0 0 chr6 162375100 162375186 -20040056 + AT_rich Low_complexity Low_complexity 1 86 0 26 30 0 0 chr6 162375212 162375245 -20039997 + AT_rich Low_complexity Low_complexity 1 33 0 331 190 0 13 chr6 162377964 162378043 -20037199 + L1MB8 LINE L1 6098 6175 -3 264 234 90 83 chr6 162378659 162378804 -20036438 - L2 LINE L2 -10 3303 3158 2088 154 0 0 chr6 162379210 162379522 -20035720 - AluSx SINE Alu 0 312 1 3232 74 32 2 chr6 162379797 162380228 -20035014 + MLT2A1 LTR ERVL 1 444 0 2450 105 5 27 chr6 162380442 162380814 -20034428 + THE1B LTR MaLR 1 364 0 451 312 115 73 chr6 162381021 162381461 -20033781 - L2 LINE L2 -849 2465 1980 2429 94 0 16 chr6 162381461 162381779 -20033463 + AluSp SINE Alu 1 313 0 451 312 115 73 chr6 162381779 162382068 -20033174 - L2 LINE L2 -1334 1980 1705 247 252 65 0 chr6 162382077 162382184 -20033058 - L1MC4 LINE L1 -4 8038 7925 345 255 128 36 chr6 162382261 162382457 -20032785 - L1MC5 LINE L1 -227 7734 7521 317 185 25 0 chr6 162382537 162382618 -20032624 - L1MC5 LINE L1 -541 7420 7338 319 265 12 0 chr6 162382626 162382709 -20032533 + MER58A DNA MER1_type 1 84 -23 382 333 59 24 chr6 162382759 162383333 -20031909 - L1M4 LINE L1 -1088 5058 4465 566 172 27 0 chr6 162383421 162383651 -20031591 + (TA)n Simple_repeat Simple_repeat 1 236 0 258 238 16 0 chr6 162383662 162383725 -20031517 - L1P LINE L1 -1902 4244 4181 294 285 86 50 chr6 162384017 162384943 -20030299 - L1M4 LINE L1 -2509 3637 2678 369 356 66 9 chr6 162384984 162385301 -20029941 - L1M4 LINE L1 -3625 2521 2187 221 130 43 29 chr6 162385372 162385441 -20029801 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 2216 109 7 0 chr6 162385732 162386036 -20029206 - AluSq SINE Alu -7 306 1 481 319 39 22 chr6 162386227 162386584 -20028658 - HAL1b LINE L1 -741 607 245 2319 92 0 3 chr6 162386633 162386928 -20028314 + AluY SINE Alu 1 294 -17 41511 48 2 1 chr6 162386930 162393091 -20022151 + L1PA5 LINE L1 1 6172 0 42 36 0 0 chr6 162394047 162394103 -20021139 + AT_rich Low_complexity Low_complexity 1 56 0 593 299 89 28 chr6 162394214 162394859 -20020383 + L1M4 LINE L1 4500 5191 -955 2226 88 30 0 chr6 162394859 162395154 -20020088 + AluY SINE Alu 1 304 -7 593 299 89 28 chr6 162395154 162395190 -20020052 + L1M4 LINE L1 5191 5223 -923 205 255 0 0 chr6 162395994 162396041 -20019201 + GA-rich Low_complexity Low_complexity 2 48 0 241 332 53 37 chr6 162396437 162396627 -20018615 - MIR SINE MIR -58 204 12 1739 193 43 33 chr6 162396666 162397210 -20018032 - MLT2A2 LTR ERVL 0 554 1 35969 88 7 9 chr6 162397210 162397408 -20017834 - HERVL-A2-A2 LTR ERVL 0 5654 5457 2021 107 7 7 chr6 162397408 162397688 -20017554 - AluSg1 SINE Alu -19 290 11 35969 88 7 9 chr6 162397688 162403160 -20012082 - HERVL-A2-A2 LTR ERVL -197 5457 1 2148 172 41 33 chr6 162403160 162403705 -20011537 - MLT2A2 LTR ERVL 0 554 2 314 249 188 57 chr6 162404245 162404474 -20010768 + MIR SINE MIR 4 262 0 355 328 8 30 chr6 162404970 162405104 -20010138 - MIR3 SINE MIR -48 160 30 203 311 172 33 chr6 162405908 162406088 -20009154 + L2 LINE L2 3107 3311 -2 387 208 10 31 chr6 162406432 162406528 -20008714 + L1PB4 LINE L1 6063 6156 0 243 0 0 0 chr6 162406728 162406755 -20008487 + (T)n Simple_repeat Simple_repeat 1 27 0 484 286 52 97 chr6 162406778 162406860 -20008382 + L2 LINE L2 2950 3034 -279 2115 92 30 10 chr6 162406860 162407155 -20008087 + AluSc SINE Alu 1 301 -8 484 286 52 97 chr6 162407155 162407453 -20007789 + L2 LINE L2 3034 3313 0 245 89 22 0 chr6 162410128 162410173 -20005069 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 21 36 0 0 chr6 162410588 162410616 -20004626 + AT_rich Low_complexity Low_complexity 1 28 0 228 299 47 47 chr6 162410616 162410719 -20004523 + L2 LINE L2 3139 3244 -28 2186 175 75 8 chr6 162410719 162411118 -20004124 - MSTB LTR MaLR 0 426 1 228 299 47 47 chr6 162411118 162411141 -20004101 + L2 LINE L2 3243 3265 -7 871 210 9 90 chr6 162411159 162411392 -20003850 + MER58A DNA MER1_type 1 214 -10 183 100 0 0 chr6 162411962 162411992 -20003250 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 663 207 0 0 chr6 162412177 162412445 -20002797 + CT-rich Low_complexity Low_complexity 1 268 0 541 307 87 4 chr6 162412534 162412856 -20002386 + L1MC4a LINE L1 5536 5819 -302 2161 171 8 15 chr6 162413736 162414129 -20001113 - L1MA8 LINE L1 -417 5874 5485 488 260 0 0 chr6 162414763 162414859 -20000383 - MIR SINE MIR -138 124 29 348 83 0 0 chr6 162416452 162416500 -19998742 + (CA)n Simple_repeat Simple_repeat 2 49 0 215 231 0 0 chr6 162417274 162417326 -19997916 - MIR SINE MIR -25 237 186 252 323 97 16 chr6 162417453 162417577 -19997665 + L2 LINE L2 3138 3271 -1 424 261 60 129 chr6 162417828 162417874 -19997368 + L1MC4a LINE L1 4952 5000 -1146 530 183 10 0 chr6 162417874 162417978 -19997264 + L1MB8 LINE L1 6074 6178 0 424 261 60 129 chr6 162417978 162418380 -19996862 + L1MC4a LINE L1 5000 5369 -777 555 273 117 21 chr6 162418404 162418730 -19996512 + L1MC4a LINE L1 5554 5910 -1898 26 30 0 0 chr6 162419714 162419747 -19995495 + AT_rich Low_complexity Low_complexity 1 33 0 311 0 26 0 chr6 162420506 162420545 -19994697 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 193 370 105 31 chr6 162423100 162423262 -19991980 + L2 LINE L2 2926 3099 -173 220 172 86 69 chr6 162423309 162423367 -19991875 - L2 LINE L2 0 3313 3255 303 287 87 87 chr6 162425531 162425761 -19989481 + MIR SINE MIR 23 252 -10 1889 120 0 22 chr6 162426351 162426627 -19988615 + AluSq SINE Alu 37 306 -7 367 329 7 28 chr6 162427208 162427351 -19987891 - MER5B DNA MER1_type -38 140 1 1199 270 60 28 chr6 162427815 162428252 -19986990 - LTR26 LTR ERV1 -2 601 151 2099 163 0 51 chr6 162428283 162428638 -19986604 - MER1B DNA MER1_type 0 337 1 272 278 0 0 chr6 162429739 162429793 -19985449 - L2 LINE L2 -18 3254 3201 190 231 39 0 chr6 162429811 162429863 -19985379 + MIR SINE MIR 129 182 -80 654 246 141 5 chr6 162430159 162430350 -19984892 + MIR SINE MIR 8 224 -38 667 268 47 57 chr6 162430460 162430777 -19984465 - L1ME4a LINE L1 -286 5835 5522 411 194 52 60 chr6 162432134 162432268 -19982974 - L1ME4a LINE L1 -11 6110 5978 183 380 139 22 chr6 162432328 162432465 -19982777 - L3b LINE CR1 -57 1526 1374 305 235 0 71 chr6 162432477 162432562 -19982680 + MIR SINE MIR 24 102 -106 27 29 0 0 chr6 162432683 162432717 -19982525 + AT_rich Low_complexity Low_complexity 1 34 0 6589 146 36 8 chr6 162432717 162433863 -19981379 - L1MC1 LINE L1 0 6333 5162 195 267 0 33 chr6 162434086 162434146 -19981096 + MIR3 SINE MIR 151 208 0 2530 104 6 30 chr6 162434862 162435226 -19980016 + THE1A LTR MaLR 1 355 0 12120 100 11 8 chr6 162435226 162436800 -19978442 + THE1A-int LTR MaLR 1 1580 0 1442 131 17 13 chr6 162436800 162437037 -19978205 + THE1A LTR MaLR 1 238 -117 5517 93 17 12 chr6 162437276 162443206 -19972036 + L1PA6 LINE L1 11 6154 0 1014 91 8 0 chr6 162443223 162443355 -19971887 + THE1A LTR MaLR 223 355 0 999 155 0 0 chr6 162443926 162444074 -19971168 + FRAM SINE Alu 1 146 -30 261 0 0 0 chr6 162444084 162444113 -19971129 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1283 299 50 30 chr6 162444205 162444700 -19970542 - MLT1G1 LTR MaLR -90 505 1 85 42 0 0 chr6 162445126 162445246 -19969996 + AT_rich Low_complexity Low_complexity 1 120 0 537 287 39 52 chr6 162446201 162446431 -19968811 - MLT1J1 LTR MaLR -23 423 197 386 319 37 7 chr6 162446607 162446742 -19968500 - MER5B DNA MER1_type -37 141 3 561 247 78 5 chr6 162446805 162447024 -19968218 - MER20B DNA MER1_type -56 727 493 2762 142 24 0 chr6 162447188 162447603 -19967639 + MSTC LTR MaLR 4 428 0 2169 114 3 0 chr6 162448360 162448649 -19966593 - AluSx SINE Alu -22 290 1 406 277 59 8 chr6 162448678 162448797 -19966445 - MER20B DNA MER1_type -572 211 87 210 343 0 10 chr6 162449455 162449554 -19965688 + GA-rich Low_complexity Low_complexity 1 98 0 200 250 54 18 chr6 162450302 162450358 -19964884 + L2 LINE L2 3214 3271 -1 361 216 40 0 chr6 162451631 162451705 -19963537 - MLT1K LTR MaLR -10 578 502 2162 118 3 0 chr6 162451772 162452069 -19963173 + AluSg1 SINE Alu 5 302 -7 339 25 0 0 chr6 162452102 162452142 -19963100 + (TC)n Simple_repeat Simple_repeat 1 40 0 240 314 48 19 chr6 162452185 162452290 -19962952 - MLT1K LTR MaLR -206 382 275 294 288 83 8 chr6 162452678 162452810 -19962432 + MIR SINE MIR 34 175 -87 543 333 46 0 chr6 162453791 162454007 -19961235 + L2 LINE L2 2549 2774 -540 245 291 23 87 chr6 162454143 162454315 -19960927 - MLT1K LTR MaLR -164 385 225 243 363 146 9 chr6 162454467 162454679 -19960563 + L2 LINE L2 3017 3257 -15 200 259 37 0 chr6 162455085 162455139 -19960103 + L3 LINE CR1 1518 1573 -4 226 239 0 0 chr6 162455306 162455352 -19959890 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 291 54 0 0 chr6 162455897 162455934 -19959308 + (TC)n Simple_repeat Simple_repeat 2 38 0 240 35 0 0 chr6 162455935 162455964 -19959278 + (CA)n Simple_repeat Simple_repeat 2 30 0 484 296 142 33 chr6 162456643 162457107 -19958135 - L2 LINE L2 -123 3190 2680 22 35 0 0 chr6 162459794 162459823 -19955419 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr6 162460128 162460163 -19955079 + AT_rich Low_complexity Low_complexity 1 35 0 417 335 29 12 chr6 162462207 162462377 -19952865 + MIR SINE MIR 20 192 -70 192 125 0 0 chr6 162462466 162462498 -19952744 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 324 317 48 62 chr6 162462708 162462916 -19952326 + MIR SINE MIR 25 229 -33 517 266 47 18 chr6 162463049 162463218 -19952024 + MIR SINE MIR 89 262 0 255 278 63 0 chr6 162463242 162463368 -19951874 - L1M4c LINE L1 -4126 3012 2879 354 211 78 22 chr6 162463380 162463470 -19951772 + MER21B LTR ERV1 12 106 -757 * 3346 195 41 34 chr6 162463468 162464124 -19951118 + MER21B LTR ERV1 19 679 -184 2550 259 60 52 chr6 162464155 162464198 -19951044 - L1M4c LINE L1 -4247 2891 2850 2366 100 0 0 chr6 162464198 162464497 -19950745 - AluSx SINE Alu -13 299 1 2550 259 60 52 chr6 162464497 162464547 -19950695 - L1M4c LINE L1 -4288 2850 2802 2873 6 0 19 chr6 162464547 162464864 -19950378 - AluYb8 SINE Alu -7 311 1 2550 259 60 52 chr6 162464864 162465352 -19949890 - L1M4c LINE L1 -4336 2802 2319 1710 156 0 57 chr6 162465352 162465677 -19949565 - AluJo SINE Alu 0 308 1 2550 259 60 52 chr6 162465677 162466629 -19948613 - L1M4c LINE L1 -4819 2319 1182 250 271 33 146 chr6 162466715 162466955 -19948287 - L1M4c LINE L1 -5704 1151 939 376 298 56 37 chr6 162467070 162467285 -19947957 - L1M4c LINE L1 -6601 258 40 2739 106 24 19 chr6 162467622 162468048 -19947194 - MSTA LTR MaLR 0 428 1 2029 119 3 64 chr6 162468155 162468482 -19946760 + AluSp SINE Alu 1 307 -6 225 342 33 49 chr6 162468527 162468711 -19946531 + L3 LINE CR1 1344 1524 -53 411 223 83 8 chr6 162468801 162468922 -19946320 - MIR SINE MIR -76 186 57 2948 105 2 0 chr6 162469050 162469458 -19945784 + L1PA13 LINE L1 5744 6152 -11 287 140 20 0 chr6 162471905 162471955 -19943287 - MER58 DNA MER1_type -4 2416 2366 207 0 0 0 chr6 162471957 162471980 -19943262 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 363 137 45 0 chr6 162471985 162472057 -19943185 - MER58 DNA MER1_type -105 110 36 375 214 12 0 chr6 162472262 162472346 -19942896 + L1MB1 LINE L1 6060 6144 -24 225 0 0 0 chr6 162472346 162472371 -19942871 + (TG)n Simple_repeat Simple_repeat 2 26 0 709 223 29 6 chr6 162472556 162472731 -19942511 - MIR SINE MIR -61 201 23 2847 13 0 0 chr6 162473381 162473688 -19941554 + AluYa5 SINE Alu 1 307 -4 271 297 27 9 chr6 162474146 162474257 -19940985 + L1ME LINE L1 4898 5010 -1136 484 226 124 7 chr6 162474645 162474782 -19940460 - MER5B DNA MER1_type -6 172 20 457 293 8 68 chr6 162474846 162475102 -19940140 + L1ME LINE L1 5501 5741 -421 236 228 9 44 chr6 162475465 162475579 -19939663 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 205 206 14 110 chr6 162475828 162475901 -19939341 - MER5A DNA MER1_type -120 69 4 3306 58 13 34 chr6 162477116 162477564 -19937678 + L1PA8 LINE L1 5733 6171 -1 185 255 0 21 chr6 162477621 162477668 -19937574 + L2 LINE L2 3254 3299 -14 189 316 26 13 chr6 162479448 162479524 -19935718 + MER5B DNA MER1_type 28 104 -74 309 242 82 94 chr6 162479665 162479909 -19935333 - MER102b DNA MER1_type 0 341 101 206 320 0 31 chr6 162480048 162480145 -19935097 - L2 LINE L2 -565 2749 2656 1892 103 66 11 chr6 162482813 162483085 -19932157 + AluSx SINE Alu 1 287 -25 193 239 43 0 chr6 162483230 162483276 -19931966 + MIR SINE MIR 85 132 -76 217 299 26 13 chr6 162483569 162483646 -19931596 - MIR3 SINE MIR -12 196 119 543 273 57 16 chr6 162483670 162483864 -19931378 - MIR SINE MIR -34 228 27 216 307 51 36 chr6 162483832 162483969 -19931273 - MIR3 SINE MIR -54 154 16 * 273 250 0 0 chr6 162484200 162484260 -19930982 + MIR SINE MIR 79 138 -124 303 246 55 9 chr6 162484648 162484758 -19930484 - MIR3 SINE MIR -1 207 93 22 0 0 0 chr6 162484846 162484868 -19930374 + AT_rich Low_complexity Low_complexity 1 22 0 364 269 112 8 chr6 162486047 162486181 -19929061 + MIR SINE MIR 103 250 -12 24 0 0 0 chr6 162491600 162491624 -19923618 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr6 162491637 162491660 -19923582 + AT_rich Low_complexity Low_complexity 1 23 0 2144 117 0 37 chr6 162493158 162493482 -19921760 + AluSx SINE Alu 1 312 0 327 104 0 0 chr6 162494374 162494422 -19920820 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 199 333 42 0 chr6 162494422 162494518 -19920724 - L2 LINE L2 -13 3259 3160 417 319 51 25 chr6 162494561 162494796 -19920446 + L2 LINE L2 2734 2974 -340 191 343 27 14 chr6 162494947 162495020 -19920222 + L2 LINE L2 3239 3312 -1 234 222 33 44 chr6 162495757 162495847 -19919395 + L1ME LINE L1 5817 5905 -259 2190 122 0 0 chr6 162497000 162497342 -19917900 + AluSx SINE Alu 1 312 0 2199 117 7 0 chr6 162498060 162498358 -19916884 + AluSx SINE Alu 1 300 -12 653 77 28 49 chr6 162498390 162498533 -19916709 + (GAAA)n Simple_repeat Simple_repeat 1 140 0 652 162 36 0 chr6 162499324 162499435 -19915807 + FLAM_A SINE Alu 1 115 -18 25 0 0 0 chr6 162499435 162499460 -19915782 + AT_rich Low_complexity Low_complexity 1 25 0 2433 68 0 7 chr6 162499523 162499830 -19915412 + AluY SINE Alu 1 305 -6 1792 182 13 7 chr6 162500246 162500548 -19914694 + AluJb SINE Alu 1 304 -8 1691 153 7 27 chr6 162500560 162500860 -19914382 + AluJo SINE Alu 1 294 -18 22 35 0 0 chr6 162501151 162501180 -19914062 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr6 162503253 162503279 -19911963 + (TG)n Simple_repeat Simple_repeat 2 27 0 2467 88 0 0 chr6 162504518 162504825 -19910417 + AluSx SINE Alu 5 311 -1 697 271 83 26 chr6 162504839 162505025 -19910217 - MIR SINE MIR -20 242 39 900 194 145 14 chr6 162505025 162505308 -19909934 - MER33 DNA MER1_type 0 324 5 697 271 83 26 chr6 162505308 162505350 -19909892 - MIR SINE MIR -223 39 1 206 347 160 14 chr6 162505530 162505818 -19909424 + L2 LINE L2 2078 2407 -907 573 267 20 20 chr6 162507301 162507447 -19907795 + MIR SINE MIR 31 176 -86 232 289 13 0 chr6 162507497 162507573 -19907669 + MIR SINE MIR 117 193 -69 801 272 8 34 chr6 162507947 162508182 -19907060 - MIR SINE MIR -30 232 4 300 297 45 0 chr6 162509390 162509501 -19905741 - L3b LINE CR1 -130 1453 1338 2085 119 7 32 chr6 162509701 162510011 -19905231 + AluSx SINE Alu 1 302 -10 254 180 16 0 chr6 162511151 162511212 -19904030 + (CA)n Simple_repeat Simple_repeat 2 63 0 360 0 0 0 chr6 162513217 162513257 -19901985 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr6 162514351 162514376 -19900866 + AT_rich Low_complexity Low_complexity 1 25 0 1903 176 27 6 chr6 162515213 162515543 -19899699 + MER2 DNA MER2_type 4 340 -5 2129 130 3 0 chr6 162515605 162515898 -19899344 - AluSx SINE Alu -18 294 1 3486 119 35 4 chr6 162515954 162516475 -19898767 + L1MA4A LINE L1 5751 6287 -16 2084 91 24 17 chr6 162516529 162516827 -19898415 - AluSx SINE Alu -11 301 2 21 57 0 0 chr6 162517401 162517436 -19897806 + AT_rich Low_complexity Low_complexity 1 35 0 1559 75 0 0 chr6 162517726 162517914 -19897328 - AluSc SINE Alu -14 295 108 313 335 78 29 chr6 162517968 162518174 -19897068 - MIR SINE MIR -6 256 41 285 229 108 83 chr6 162518221 162518378 -19896864 - HAL1 LINE L1 -6 2501 2341 950 179 6 17 chr6 162518381 162518554 -19896688 - AluJo SINE Alu -19 293 123 964 94 0 0 chr6 162518780 162518908 -19896334 - AluSc SINE Alu -13 296 169 462 285 21 0 chr6 162519013 162519157 -19896085 - ERVL LTR ERVL -1438 4326 4180 2052 319 35 14 chr6 162519192 162519981 -19895261 - ERVL LTR ERVL -1667 4097 3292 1221 314 45 37 chr6 162520000 162521099 -19894143 - ERVL LTR ERVL -2477 3177 1969 576 263 47 6 chr6 162521114 162521285 -19893957 + L1MD2 LINE L1 6165 6342 -17 204 67 0 0 chr6 162521400 162521430 -19893812 + (CA)n Simple_repeat Simple_repeat 1 30 0 241 308 87 19 chr6 162523468 162523572 -19891670 - L2 LINE L2 -26 3246 3136 198 0 0 0 chr6 162523787 162523809 -19891433 + (TG)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr6 162523906 162523935 -19891307 + AT_rich Low_complexity Low_complexity 1 29 0 334 365 48 8 chr6 162523963 162524089 -19891153 + L2 LINE L2 3138 3268 -4 1142 251 30 14 chr6 162524160 162524455 -19890787 - MLT1I LTR MaLR -3 406 107 574 182 0 15 chr6 162524716 162524848 -19890394 + CT-rich Low_complexity Low_complexity 2 131 0 1448 172 0 38 chr6 162524854 162525121 -19890121 - AluJo SINE Alu -55 257 1 222 150 0 0 chr6 162525454 162525494 -19889748 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 295 169 185 0 chr6 162525832 162525897 -19889345 + MLT1C LTR MaLR 6 82 -385 3610 134 23 59 chr6 162525898 162526547 -19888695 + L1MA7 LINE L1 5656 6281 -10 504 169 24 81 chr6 162526565 162526689 -19888553 + MLT1C LTR MaLR 66 182 -285 357 62 0 0 chr6 162526694 162526742 -19888500 + (CA)n Simple_repeat Simple_repeat 2 49 0 415 206 11 11 chr6 162526817 162526909 -19888333 + MLT1C LTR MaLR 376 467 0 279 341 83 30 chr6 162527718 162527850 -19887392 - L2 LINE L2 -181 3091 2953 533 257 211 28 chr6 162527878 162528055 -19887187 + MLT1G1 LTR MaLR 1 144 -398 194 0 39 0 chr6 162528055 162528081 -19887161 + (GAA)n Simple_repeat Simple_repeat 2 28 0 533 257 211 28 chr6 162528081 162528394 -19886848 + MLT1G1 LTR MaLR 144 530 -12 265 279 93 12 chr6 162528616 162528702 -19886540 + MIR SINE MIR 30 122 -86 779 269 200 37 chr6 162528791 162529526 -19885716 - HAL1 LINE L1 -11 2496 1642 783 301 14 7 chr6 162529529 162529821 -19885421 - HAL1 LINE L1 -1137 1370 1077 1515 193 65 73 chr6 162530312 162530664 -19884578 + MSTD LTR MaLR 1 352 -44 2359 70 0 0 chr6 162530664 162530974 -19884268 + AluY SINE Alu 1 310 0 1515 193 65 73 chr6 162530974 162531019 -19884223 + MSTD LTR MaLR 352 396 0 194 348 37 31 chr6 162531231 162531392 -19883850 + L3 LINE CR1 555 716 -861 22 88 0 0 chr6 162531443 162531500 -19883742 + AT_rich Low_complexity Low_complexity 1 57 0 429 213 213 62 chr6 162531501 162531726 -19883516 - HAL1 LINE L1 -14 2493 2235 1278 259 154 22 chr6 162531728 162532312 -19882930 - HAL1 LINE L1 -316 2191 1531 1868 244 33 20 chr6 162532312 162532770 -19882472 + LTR16B LTR ERVL 1 464 0 303 323 55 18 chr6 162532790 162532954 -19882288 + HERV16 LTR ERVL 61 230 -4766 1465 320 53 18 chr6 162533337 162534000 -19881242 + HERV16 LTR ERVL 772 1457 -3539 512 244 9 0 chr6 162534023 162534138 -19881104 + HERV16 LTR ERVL 1712 1827 -3169 326 208 56 0 chr6 162534165 162534237 -19881005 - HAL1 LINE L1 -1164 1343 1268 266 250 37 56 chr6 162534244 162534352 -19880890 - MLT1H LTR MaLR -4 545 440 4823 177 27 29 chr6 162535304 162536084 -19879158 - L1MB3 LINE L1 0 6183 5405 2179 122 0 0 chr6 162536084 162536379 -19878863 - AluSq SINE Alu -18 295 1 4823 177 27 29 chr6 162536379 162536946 -19878296 - L1MB3 LINE L1 -778 5405 4838 280 312 98 89 chr6 162536990 162537419 -19877823 - L2 LINE L2 -16 3256 2824 1091 245 16 4 chr6 162538291 162538540 -19876702 + MER112 DNA MER1_type 8 259 -1 198 0 0 0 chr6 162538776 162538798 -19876444 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 682 272 109 18 chr6 162538921 162539204 -19876038 - MLT1L LTR MaLR -12 603 295 2183 119 0 7 chr6 162539214 162539516 -19875726 - AluSg SINE Alu -10 300 1 235 221 84 63 chr6 162539568 162539663 -19875579 + MER5A DNA MER1_type 7 103 -86 611 266 60 22 chr6 162539690 162539874 -19875368 - MLT1L LTR MaLR -382 233 43 2121 241 30 35 chr6 162539901 162540477 -19874765 + L1M4 LINE L1 282 854 -5688 234 128 0 0 chr6 162541311 162541350 -19873892 + (TCTCC)n Simple_repeat Simple_repeat 2 40 0 2667 110 16 11 chr6 162541402 162541775 -19873467 - THE1C LTR MaLR 0 375 1 622 227 0 8 chr6 162541829 162541957 -19873285 - L2 LINE L2 0 3313 3187 233 180 0 0 chr6 162542600 162542650 -19872592 - L2 LINE L2 -85 3228 3179 2249 114 7 3 chr6 162542913 162543219 -19872023 - AluSx SINE Alu -5 307 1 1919 262 96 28 chr6 162543672 162544568 -19870674 + L1M4 LINE L1 1994 2950 -3875 348 283 41 7 chr6 162544584 162544729 -19870513 + L1M4 LINE L1 3781 3930 -2714 2152 124 10 0 chr6 162544733 162545039 -19870203 + AluSg SINE Alu 1 309 -1 1518 290 109 30 chr6 162545059 162545717 -19869525 + HERVL LTR ERVL 583 1292 -3704 5382 243 36 58 chr6 162545877 162546515 -19868727 + HERVL LTR ERVL 1592 2242 -2754 2229 96 3 0 chr6 162546515 162546806 -19868436 + AluSq SINE Alu 1 292 -21 5382 243 36 58 chr6 162546806 162546938 -19868304 + HERVL LTR ERVL 2242 2375 -2621 1718 157 34 14 chr6 162546938 162547231 -19868011 + AluJo SINE Alu 5 303 -9 5382 243 36 58 chr6 162547231 162547997 -19867245 + HERVL LTR ERVL 2375 3096 -1900 529 291 11 6 chr6 162548085 162548260 -19866982 + HERVL LTR ERVL 5175 5350 -304 696 307 17 4 chr6 162548452 162548693 -19866549 + LTR16A LTR ERVL 158 401 -49 278 325 105 5 chr6 162548801 162548992 -19866250 + HERVL LTR ERVL 2027 2236 -3418 1427 140 5 9 chr6 162549170 162549391 -19865851 + AluJb SINE Alu 86 305 -7 720 220 63 82 chr6 162549505 162549773 -19865469 - ORSL DNA AcHobo 0 275 13 213 140 40 20 chr6 162549877 162549927 -19865315 + (TTTAA)n Simple_repeat Simple_repeat 5 55 0 1530 103 70 0 chr6 162549986 162550200 -19865042 - MER30 DNA MER1_type -1 229 1 712 250 24 18 chr6 162551701 162551869 -19863373 + MER5B DNA MER1_type 1 169 -9 560 239 87 36 chr6 162551941 162552208 -19863034 - Charlie8 DNA MER1_type -2152 265 61 45 79 0 0 chr6 162552271 162552372 -19862870 + AT_rich Low_complexity Low_complexity 1 101 0 306 135 77 0 chr6 162552439 162552491 -19862751 + MADE1 DNA Mariner 1 56 -24 197 324 117 18 chr6 162552615 162552726 -19862516 - L2 LINE L2 0 3272 3151 24 0 0 0 chr6 162552852 162552876 -19862366 + AT_rich Low_complexity Low_complexity 1 24 0 2371 66 0 3 chr6 162553201 162553488 -19861754 - AluSg SINE Alu -24 286 1 766 148 19 26 chr6 162553488 162553635 -19861607 + L1MA8 LINE L1 6133 6280 -11 180 0 0 0 chr6 162553635 162553655 -19861587 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 204 281 172 0 chr6 162553720 162553784 -19861458 - L2 LINE L2 0 3313 3239 1550 127 5 0 chr6 162554612 162554824 -19860418 + AluSx SINE Alu 1 213 -99 411 199 62 85 chr6 162554904 162555080 -19860162 + MER53 DNA DNA 18 189 0 406 212 56 106 chr6 162555342 162555521 -19859721 - HAL1 LINE L1 -2333 174 5 764 179 36 46 chr6 162555750 162555945 -19859297 + L1MA6 LINE L1 6108 6300 0 25 31 0 0 chr6 162555945 162555977 -19859265 + AT_rich Low_complexity Low_complexity 1 32 0 2352 113 0 3 chr6 162556270 162556580 -19858662 + AluSx SINE Alu 1 309 -3 25 51 0 0 chr6 162558511 162558550 -19856692 + AT_rich Low_complexity Low_complexity 1 39 0 191 244 13 0 chr6 162560281 162560359 -19854883 + (TA)n Simple_repeat Simple_repeat 2 80 0 30 27 0 0 chr6 162562169 162562206 -19853036 + AT_rich Low_complexity Low_complexity 1 37 0 2527 61 0 0 chr6 162562345 162562642 -19852600 + AluY SINE Alu 11 307 -4 853 195 30 61 chr6 162562650 162562881 -19852361 + AluJb SINE Alu 85 308 -4 239 203 6 6 chr6 162563299 162563382 -19851860 + L1MB8 LINE L1 5742 5809 -361 311 236 89 41 chr6 162563443 162563587 -19851655 - MIR3 SINE MIR -65 143 14 2136 133 39 30 chr6 162563852 162564213 -19851029 + THE1B LTR MaLR 1 364 0 321 266 0 0 chr6 162564229 162564308 -19850934 - MIR SINE MIR -88 174 96 224 354 142 32 chr6 162564438 162564749 -19850493 - L2 LINE L2 -26 3246 2902 731 246 28 6 chr6 162564810 162564989 -19850253 + MER58A DNA MER1_type 42 224 0 181 273 0 0 chr6 162565002 162565035 -19850207 + L2 LINE L2 3258 3290 -23 1126 214 7 55 chr6 162565106 162565414 -19849828 + L1MB8 LINE L1 5877 6169 -9 801 184 0 101 chr6 162565861 162566089 -19849153 + MER3 DNA MER1_type 5 209 0 374 324 76 18 chr6 162567708 162567933 -19847309 + MIR SINE MIR 21 258 -4 2084 113 11 0 chr6 162567966 162568276 -19846966 + AluSx SINE Alu 1 313 0 360 274 60 17 chr6 162568606 162568723 -19846519 - L2 LINE L2 0 3313 3192 21 0 0 0 chr6 162569066 162569087 -19846155 + AT_rich Low_complexity Low_complexity 1 21 0 23 86 0 0 chr6 162569874 162569932 -19845310 + AT_rich Low_complexity Low_complexity 1 58 0 538 332 0 43 chr6 162571695 162571906 -19843336 - L2 LINE L2 -8 3305 3104 2255 114 3 3 chr6 162571962 162572268 -19842974 - AluSx SINE Alu -6 306 1 195 170 0 0 chr6 162572524 162572571 -19842671 + A-rich Low_complexity Low_complexity 1 47 0 2492 74 3 3 chr6 162572728 162573037 -19842205 - AluSc SINE Alu 0 309 1 24 53 0 0 chr6 162573042 162573080 -19842162 + AT_rich Low_complexity Low_complexity 1 38 0 293 191 29 0 chr6 162573504 162573572 -19841670 - MER103 DNA DNA -21 145 76 347 223 11 34 chr6 162573630 162573805 -19841437 + GA-rich Low_complexity Low_complexity 3 173 0 202 229 0 0 chr6 162573950 162573998 -19841244 + T-rich Low_complexity Low_complexity 1 48 0 582 186 21 14 chr6 162574001 162574146 -19841096 - L1MB7 LINE L1 -8 6176 6031 425 136 0 0 chr6 162574151 162574210 -19841032 + AluS SINE Alu 1 59 -251 1908 135 0 0 chr6 162574210 162574469 -19840773 + AluSx SINE Alu 27 285 -27 3321 161 107 8 chr6 162574479 162575201 -19840041 - L1MB8 LINE L1 -130 6048 5256 1811 116 83 0 chr6 162576389 162576666 -19838576 + AluSg SINE Alu 1 300 -10 193 162 81 0 chr6 162576823 162576860 -19838382 - MIR SINE MIR -98 164 125 215 108 15 200 chr6 162577089 162577154 -19838088 - L2 LINE L2 -4 3309 3257 2230 116 3 6 chr6 162577208 162577519 -19837723 + AluSq SINE Alu 1 310 -3 426 20 0 0 chr6 162577682 162577733 -19837509 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2349 103 3 0 chr6 162579329 162579641 -19835601 + AluSp SINE Alu 1 313 0 2248 92 0 0 chr6 162580797 162581078 -19834164 - AluSq SINE Alu -30 283 3 297 204 151 0 chr6 162581240 162581333 -19833909 - L2 LINE L2 -4 3309 3203 2533 78 0 0 chr6 162581731 162582039 -19833203 + AluY SINE Alu 1 308 -3 315 0 0 0 chr6 162582039 162582074 -19833168 + (TA)n Simple_repeat Simple_repeat 2 36 0 4559 117 14 80 chr6 162582592 162583489 -19831753 - Tigger1 DNA MER2_type -1 2417 1580 1706 141 116 3 chr6 162583512 162583867 -19831375 - L1MA2 LINE L1 0 6304 5910 * 7454 183 29 8 chr6 162583864 162585476 -19829766 - L1 LINE L1 -2028 5537 3893 23 33 0 0 chr6 162585511 162585541 -19829701 + AT_rich Low_complexity Low_complexity 1 30 0 1404 156 0 9 chr6 162585541 162585752 -19829490 - AluSg/x SINE Alu -27 285 77 20303 142 40 16 chr6 162585753 162586439 -19828803 - L1 LINE L1 -3647 3918 3250 1584 163 0 0 chr6 162586439 162586672 -19828570 - AluSx SINE Alu -79 233 1 20303 142 40 16 chr6 162586672 162586784 -19828458 - L1 LINE L1 -4315 3250 3142 2291 88 7 7 chr6 162586784 162587081 -19828161 + AluY SINE Alu 1 297 -14 20303 142 40 16 chr6 162587081 162587967 -19827275 - L1 LINE L1 -4423 3142 2278 2250 127 0 0 chr6 162587967 162588275 -19826967 - AluSx SINE Alu -4 308 1 20303 142 40 16 chr6 162588275 162590409 -19824833 - L1 LINE L1 -5287 2278 16 3430 142 25 10 chr6 162590417 162591021 -19824221 - Tigger1 DNA MER2_type -826 1592 980 249 91 0 0 chr6 162591021 162591054 -19824188 + Alu SINE Alu 249 281 -22 338 235 10 0 chr6 162591054 162591156 -19824086 + GA-rich Low_complexity Low_complexity 4 106 0 5233 144 23 34 chr6 162591157 162592127 -19823115 - Tigger1 DNA MER2_type -1457 961 3 227 303 15 0 chr6 162593286 162593352 -19821890 + MIR SINE MIR 86 152 -110 1698 162 35 0 chr6 162593465 162593749 -19821493 - AluJo SINE Alu -18 294 1 2374 105 3 6 chr6 162595119 162595433 -19819809 + AluSq SINE Alu 1 313 0 280 338 73 4 chr6 162595513 162595710 -19819532 + MIR SINE MIR 40 252 -10 2062 138 0 6 chr6 162597139 162597450 -19817792 + AluSx SINE Alu 4 312 0 21 0 0 0 chr6 162598138 162598159 -19817083 + AT_rich Low_complexity Low_complexity 1 21 0 565 247 18 18 chr6 162598376 162598546 -19816696 - MIR SINE MIR -1 261 92 267 316 128 60 chr6 162599506 162600178 -19815064 - L2 LINE L2 -2 3270 2556 311 369 78 8 chr6 162601740 162602008 -19813234 - L3b LINE CR1 -119 1464 1178 22 0 0 0 chr6 162602056 162602078 -19813164 + AT_rich Low_complexity Low_complexity 1 22 0 2336 102 0 0 chr6 162602522 162602825 -19812417 + AluSx SINE Alu 1 303 -9 37 39 0 0 chr6 162603651 162603702 -19811540 + AT_rich Low_complexity Low_complexity 1 51 0 537 311 34 0 chr6 162604033 162604181 -19811061 + MIR3 SINE MIR 25 177 -31 42 48 0 0 chr6 162605063 162605126 -19810116 + AT_rich Low_complexity Low_complexity 1 63 0 3836 161 21 15 chr6 162605160 162605906 -19809336 - L1MB8 LINE L1 0 6178 5428 2200 122 26 0 chr6 162606973 162607276 -19807966 + AluSq SINE Alu 1 311 -2 1021 205 17 116 chr6 162607520 162607925 -19807317 + MLT1A1 LTR MaLR 1 365 0 223 205 90 0 chr6 162608375 162608543 -19806699 + (TTATA)n Simple_repeat Simple_repeat 1 183 0 800 257 29 0 chr6 162608698 162608904 -19806338 - MIR SINE MIR 0 262 51 215 208 0 94 chr6 162609286 162609339 -19805903 - L2 LINE L2 -70 3202 3155 2174 102 0 30 chr6 162609828 162610131 -19805111 + AluSg SINE Alu 1 294 -16 25 0 0 0 chr6 162610150 162610175 -19805067 + AT_rich Low_complexity Low_complexity 1 25 0 2221 87 0 7 chr6 162610187 162610473 -19804769 + AluY SINE Alu 21 304 -7 494 118 86 0 chr6 162610481 162610574 -19804668 - L1MA7 LINE L1 -2 6289 6189 1690 125 110 0 chr6 162610993 162611257 -19803985 + AluSx SINE Alu 1 293 -19 350 291 42 24 chr6 162612475 162612640 -19802602 - L1ME4a LINE L1 -4 6117 5950 1421 194 30 72 chr6 162614909 162615378 -19799864 + LTR10B LTR ERV1 1 547 0 767 92 8 8 chr6 162615591 162615722 -19799520 - L1MA7 LINE L1 -4 6287 6157 929 171 0 39 chr6 162615723 162615928 -19799314 + L1MA7 LINE L1 5933 6129 -162 2277 85 3 0 chr6 162616394 162616677 -19798565 + AluSg1 SINE Alu 1 284 -25 369 109 0 0 chr6 162616681 162616736 -19798506 + (GGGGA)n Simple_repeat Simple_repeat 3 57 0 22 56 0 0 chr6 162617406 162617442 -19797800 + AT_rich Low_complexity Low_complexity 1 36 0 365 281 42 0 chr6 162617956 162618052 -19797190 + L1MC4 LINE L1 6613 6712 -1330 331 283 97 9 chr6 162617961 162618074 -19797168 - L1MC4 LINE L1 -1339 6703 6581 * 878 228 11 0 chr6 162618099 162618279 -19796963 - MIR SINE MIR -49 213 32 339 25 0 0 chr6 162618335 162618375 -19796867 + (CA)n Simple_repeat Simple_repeat 2 41 0 228 205 217 36 chr6 162618501 162618584 -19796658 - L2 LINE L2 -1058 2256 2159 21 0 0 0 chr6 162619240 162619261 -19795981 + AT_rich Low_complexity Low_complexity 1 21 0 334 249 22 122 chr6 162619330 162619526 -19795716 + MIR3 SINE MIR 30 208 0 286 276 41 81 chr6 162619736 162619859 -19795383 - MIR SINE MIR -65 143 26 25 0 0 0 chr6 162620316 162620341 -19794901 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr6 162620894 162620919 -19794323 + AT_rich Low_complexity Low_complexity 1 25 0 261 231 15 60 chr6 162621510 162621644 -19793598 + A-rich Low_complexity Low_complexity 3 130 0 24 32 0 0 chr6 162621971 162622002 -19793240 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 162622583 162622606 -19792636 + AT_rich Low_complexity Low_complexity 1 23 0 284 283 138 22 chr6 162622647 162623054 -19792188 + L1MC5 LINE L1 7316 7769 -192 1402 149 0 14 chr6 162623091 162623305 -19791937 - AluJb SINE Alu -16 296 86 26 0 0 0 chr6 162623491 162623517 -19791725 + AT_rich Low_complexity Low_complexity 1 26 0 1653 72 41 0 chr6 162623894 162624115 -19791127 + MER30 DNA MER1_type 1 230 0 213 39 0 0 chr6 162624788 162624832 -19790410 + (TG)n Simple_repeat Simple_repeat 1 70 0 213 39 0 0 chr6 162624832 162624858 -19790384 + (TG)n Simple_repeat Simple_repeat 2 27 0 33 0 0 0 chr6 162624910 162624943 -19790299 + AT_rich Low_complexity Low_complexity 1 33 0 206 360 52 52 chr6 162625895 162626031 -19789211 - L2 LINE L2 -12 3260 3125 1968 100 28 3 chr6 162626389 162626679 -19788563 - AluSx SINE Alu -15 297 1 2276 98 7 7 chr6 162627339 162627645 -19787597 - AluSg SINE Alu -4 306 1 2392 81 3 0 chr6 162628418 162628715 -19786527 - AluSp SINE Alu -15 298 1 1604 197 10 10 chr6 162628797 162629092 -19786150 - AluJb SINE Alu -13 299 5 369 252 110 16 chr6 162630210 162630337 -19784905 + MIR SINE MIR 66 204 -58 1989 146 0 16 chr6 162630361 162630669 -19784573 - AluJo SINE Alu -9 303 1 283 241 123 62 chr6 162631036 162631231 -19784011 - L2 LINE L2 -35 3278 3072 247 291 163 35 chr6 162631310 162631513 -19783729 + MIR SINE MIR 34 262 0 2156 101 3 58 chr6 162631944 162632271 -19782971 - AluSq SINE Alu -4 309 1 1894 123 4 0 chr6 162632831 162633092 -19782150 + AluSx SINE Alu 1 262 -50 248 0 31 0 chr6 162633348 162633380 -19781862 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 839 224 53 45 chr6 162633669 162633915 -19781327 - MIR SINE MIR 0 262 15 527 283 181 21 chr6 162633994 162634231 -19781011 - L3 LINE CR1 -10 1567 1293 270 0 0 0 chr6 162634555 162634585 -19780657 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr6 162636012 162636040 -19779202 + AT_rich Low_complexity Low_complexity 1 28 0 280 320 82 27 chr6 162638202 162638349 -19776893 - L2 LINE L2 -2 3270 3116 2942 270 125 31 chr6 162638618 162640246 -19774996 + HAL1 LINE L1 99 1879 -628 782 148 0 44 chr6 162640637 162640772 -19774470 + FLAM_C SINE Alu 1 129 -14 216 0 0 0 chr6 162640782 162640806 -19774436 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 279 0 0 0 chr6 162640805 162640836 -19774406 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr6 162640836 162640860 -19774382 + AT_rich Low_complexity Low_complexity 1 24 0 315 0 0 0 chr6 162640910 162640945 -19774297 + (CA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chr6 162641463 162641489 -19773753 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr6 162642999 162643039 -19772203 + AT_rich Low_complexity Low_complexity 1 40 0 1395 188 58 31 chr6 162643039 162643332 -19771910 + AluJo SINE Alu 1 301 -11 2275 93 0 3 chr6 162644004 162644305 -19770937 - AluSx SINE Alu -12 300 1 2756 19 0 3 chr6 162644531 162644843 -19770399 + AluYa5 SINE Alu 1 311 0 1887 138 3 11 chr6 162645044 162645374 -19769868 + AluSp SINE Alu 3 330 0 878 247 44 22 chr6 162646395 162646622 -19768620 - MIR SINE MIR 0 262 31 378 0 0 0 chr6 162646873 162646915 -19768327 + (T)n Simple_repeat Simple_repeat 1 42 0 2271 108 7 0 chr6 162647299 162647604 -19767638 - AluSx SINE Alu -5 307 1 1734 166 7 4 chr6 162648872 162649149 -19766093 + AluSx SINE Alu 1 278 -34 216 0 0 0 chr6 162649152 162649176 -19766066 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2073 89 0 41 chr6 162649193 162649523 -19765719 + AluSc SINE Alu 1 318 0 1415 142 16 0 chr6 162650055 162650302 -19764940 + L1MA6 LINE L1 6049 6299 -1 1871 158 6 29 chr6 162650305 162650621 -19764621 + AluSx SINE Alu 1 309 -3 1075 258 96 37 chr6 162650781 162651425 -19763817 + HAL1b LINE L1 77 758 -590 2309 122 0 0 chr6 162651787 162652099 -19763143 - AluSx SINE Alu 0 312 1 236 258 45 0 chr6 162652661 162652727 -19762515 + MIR SINE MIR 108 176 -86 1807 167 73 9 chr6 162653717 162654034 -19761208 - MER1B DNA MER1_type 0 337 1 285 374 0 6 chr6 162655615 162655786 -19759456 + (CAGGG)n Simple_repeat Simple_repeat 1 170 0 294 392 0 5 chr6 162655935 162656310 -19758932 + (CAGGG)n Simple_repeat Simple_repeat 1 373 0 1464 186 16 39 chr6 162656446 162656752 -19758490 - AluJo SINE Alu -13 299 1 661 274 74 9 chr6 162656762 162656977 -19758265 + MIR SINE MIR 32 260 -2 2156 124 34 0 chr6 162656989 162657287 -19757955 + AluSx SINE Alu 1 308 -4 2066 144 0 10 chr6 162657569 162657867 -19757375 + AluJo SINE Alu 1 295 -17 2151 120 13 0 chr6 162657982 162658281 -19756961 + AluSx SINE Alu 1 303 -9 345 265 62 13 chr6 162658284 162658462 -19756780 + L1ME2 LINE L1 5701 5890 -274 30 0 0 0 chr6 162659220 162659250 -19755992 + AT_rich Low_complexity Low_complexity 1 30 0 205 161 0 0 chr6 162659865 162659896 -19755346 + (TATG)n Simple_repeat Simple_repeat 3 33 0 310 304 93 40 chr6 162660045 162660292 -19754950 - L1ME4a LINE L1 -246 5875 5616 182 211 327 10 chr6 162660448 162660552 -19754690 - MIR3 SINE MIR -35 173 37 288 376 88 26 chr6 162663833 162664059 -19751183 - L2 LINE L2 -221 3092 2853 297 196 0 120 chr6 162666518 162666610 -19748632 - MIR SINE MIR -108 154 74 646 281 82 24 chr6 162666638 162666930 -19748312 + MER102b DNA MER1_type 33 341 0 305 198 51 18 chr6 162667352 162667464 -19747778 - L1ME4a LINE L1 -756 5395 5285 2174 88 4 0 chr6 162667631 162667938 -19747304 - AluSq SINE Alu 0 320 13 1667 165 0 63 chr6 162667945 162668261 -19746981 - AluJo SINE Alu -16 296 1 1964 147 3 7 chr6 162668652 162668958 -19746284 + AluJb SINE Alu 1 305 -7 2321 117 0 0 chr6 162669082 162669389 -19745853 - AluSx SINE Alu -5 307 1 21 0 0 0 chr6 162669395 162669416 -19745826 + AT_rich Low_complexity Low_complexity 1 21 0 277 204 23 121 chr6 162669605 162669737 -19745505 + L2 LINE L2 1400 1518 -1796 580 235 55 142 chr6 162669914 162669933 -19745309 + L2 LINE L2 1536 1555 -1759 2261 100 0 19 chr6 162669933 162670244 -19744998 - AluY SINE Alu -6 305 1 580 235 55 142 chr6 162670244 162670320 -19744922 + L2 LINE L2 1555 1636 -1678 2288 109 0 31 chr6 162670320 162670642 -19744600 - AluSx SINE Alu 0 312 1 580 235 55 142 chr6 162670642 162670967 -19744275 + L2 LINE L2 1636 1920 -1394 2297 82 3 22 chr6 162671500 162671817 -19743425 - AluY SINE Alu 0 311 1 1717 187 0 10 chr6 162671818 162672123 -19743119 - AluJo SINE Alu -8 304 3 252 86 0 0 chr6 162672186 162672221 -19743021 + (T)n Simple_repeat Simple_repeat 1 35 0 192 143 0 0 chr6 162672298 162672340 -19742902 + (A)n Simple_repeat Simple_repeat 1 42 0 2058 137 3 7 chr6 162672488 162672794 -19742448 + AluJb SINE Alu 1 305 -7 606 220 63 82 chr6 162672908 162673176 -19742066 - ORSL DNA AcHobo 0 275 13 213 140 40 20 chr6 162673280 162673330 -19741912 + (TTTAA)n Simple_repeat Simple_repeat 5 55 0 1421 103 70 0 chr6 162673389 162673603 -19741639 - MER30 DNA MER1_type -1 229 1 720 250 24 18 chr6 162675104 162675272 -19739970 + MER5B DNA MER1_type 1 169 -9 499 265 61 10 chr6 162675405 162675601 -19739641 - Charlie8 DNA MER1_type -2137 280 75 45 79 0 0 chr6 162675674 162675775 -19739467 + AT_rich Low_complexity Low_complexity 1 101 0 274 93 0 0 chr6 162675843 162675886 -19739356 + MADE1 DNA Mariner 1 43 -37 209 324 117 18 chr6 162676017 162676128 -19739114 - L2 LINE L2 0 3272 3151 24 0 0 0 chr6 162676254 162676278 -19738964 + AT_rich Low_complexity Low_complexity 1 24 0 2130 119 0 7 chr6 162676572 162676889 -19738353 - AluSg SINE Alu 0 310 1 200 346 0 12 chr6 162677435 162677516 -19737726 + MIR SINE MIR 85 164 -98 1310 146 120 73 chr6 162677517 162677792 -19737450 - AluJo SINE Alu -16 296 9 1139 285 143 24 chr6 162678025 162678852 -19736390 + L2 LINE L2 2171 3108 -205 637 310 99 9 chr6 162679215 162679547 -19735695 - L1ME3A LINE L1 -18 6152 5791 570 193 84 89 chr6 162679553 162679997 -19735245 - L1ME3A LINE L1 -690 5480 5040 606 225 33 0 chr6 162680002 162680122 -19735120 + MER5C DNA MER1_type 2 125 -199 223 173 148 62 chr6 162680141 162680222 -19735020 + MER5C DNA MER1_type 228 315 -9 466 304 28 8 chr6 162680329 162680576 -19734666 - L1ME3A LINE L1 -1251 4895 4644 2151 119 3 0 chr6 162680615 162680901 -19734341 - AluSx SINE Alu -25 287 1 2253 104 3 7 chr6 162681603 162681900 -19733342 - AluSx SINE Alu -16 296 1 919 151 7 0 chr6 162682025 162682177 -19733065 + L1MB5 LINE L1 6022 6174 0 1190 144 67 14 chr6 162682452 162682660 -19732582 - AluSg/x SINE Alu -8 302 84 2387 63 0 0 chr6 162682673 162682980 -19732262 - AluY SINE Alu 0 307 1 180 0 0 0 chr6 162682980 162683000 -19732242 + (T)n Simple_repeat Simple_repeat 1 20 0 646 102 0 0 chr6 162683000 162683088 -19732154 - 5S rRNA rRNA -1 120 33 2288 106 3 0 chr6 162683329 162683622 -19731620 + AluSx SINE Alu 1 294 -18 379 244 0 28 chr6 162684117 162684293 -19730949 + (TATAA)n Simple_repeat Simple_repeat 3 173 0 * 408 213 0 33 chr6 162684173 162684356 -19730886 + (TTATA)n Simple_repeat Simple_repeat 4 180 0 225 94 0 0 chr6 162686422 162686454 -19728788 + (TC)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chr6 162687666 162687696 -19727546 + AT_rich Low_complexity Low_complexity 1 30 0 363 78 0 0 chr6 162688670 162688721 -19726521 + (CA)n Simple_repeat Simple_repeat 2 52 0 202 320 176 25 chr6 162689121 162689405 -19725837 + L2 LINE L2 1812 2138 -1176 486 330 64 0 chr6 162689666 162689930 -19725312 + Charlie8 DNA MER1_type 1 281 -2136 446 293 78 62 chr6 162690006 162690631 -19724611 + L2 LINE L2 2626 3268 -4 25 31 0 0 chr6 162690789 162690821 -19724421 + AT_rich Low_complexity Low_complexity 1 32 0 378 0 0 0 chr6 162690836 162690878 -19724364 + (TG)n Simple_repeat Simple_repeat 1 42 0 360 327 39 13 chr6 162692504 162692657 -19722585 + L2 LINE L2 3116 3272 0 847 101 0 2 chr6 162696226 162696474 -19718768 + AluSx SINE Alu 1 297 -13 275 182 30 0 chr6 162696524 162696590 -19718652 + (CATA)n Simple_repeat Simple_repeat 3 70 0 1863 155 23 20 chr6 162696593 162696935 -19718307 + MER2 DNA MER2_type 2 344 0 228 67 0 0 chr6 162696952 162696982 -19718260 + (CA)n Simple_repeat Simple_repeat 1 30 0 2139 90 39 7 chr6 162697377 162697677 -19717565 - AluSx SINE Alu 0 312 2 301 290 109 29 chr6 162697822 162697960 -19717282 - MER5A DNA MER1_type -6 183 35 2194 101 3 3 chr6 162698332 162698618 -19716624 - AluSg SINE Alu -24 286 1 293 346 59 20 chr6 162698946 162699099 -19716143 + MIR3 SINE MIR 9 167 -41 284 331 35 65 chr6 162699113 162699258 -19715984 + MIR SINE MIR 20 162 -100 2143 116 0 0 chr6 162699258 162699583 -19715659 + AluSx SINE Alu 1 325 0 284 331 35 65 chr6 162699583 162699605 -19715637 + MIR SINE MIR 162 183 -79 1543 187 3 88 chr6 162699648 162699979 -19715263 + AluJb SINE Alu 1 303 -9 2174 102 0 0 chr6 162700891 162701175 -19714067 - AluSc SINE Alu -15 294 11 749 130 8 8 chr6 162702091 162702214 -19713028 + AluJb SINE Alu 1 123 -189 21 36 0 0 chr6 162703094 162703122 -19712120 + AT_rich Low_complexity Low_complexity 1 28 0 853 148 0 8 chr6 162703213 162703341 -19711901 + AluSq/x SINE Alu 1 127 -186 192 125 0 0 chr6 162703707 162703739 -19711503 + (T)n Simple_repeat Simple_repeat 1 32 0 390 284 43 31 chr6 162704585 162704747 -19710495 - L2 LINE L2 -190 3082 2919 2209 71 3 32 chr6 162704829 162705137 -19710105 - AluY SINE Alu -12 299 1 390 190 40 35 chr6 162705178 162705257 -19709985 + (TA)n Simple_repeat Simple_repeat 1 78 -97 2288 99 10 0 chr6 162705257 162705560 -19709682 - AluSp SINE Alu -7 306 1 390 190 40 35 chr6 162705560 162705654 -19709588 + (TA)n Simple_repeat Simple_repeat 78 175 0 51 51 0 0 chr6 162705661 162705740 -19709502 + AT_rich Low_complexity Low_complexity 1 79 0 2161 206 28 65 chr6 162705914 162706488 -19708754 - MER41C LTR ERV1 -1 553 1 1921 121 4 4 chr6 162706507 162706780 -19708462 - AluSx SINE Alu -3 309 37 209 294 153 69 chr6 162706914 162707359 -19707883 + L2 LINE L2 2373 2853 -461 317 300 56 118 chr6 162707449 162707736 -19707506 + L2 LINE L2 3003 3271 -1 308 211 0 0 chr6 162707739 162707796 -19707446 + AluS SINE Alu 19 75 -228 296 347 0 0 chr6 162709068 162709140 -19706102 - L2 LINE L2 0 3272 3201 992 232 76 108 chr6 162709209 162709776 -19705466 - MER34B LTR ERV1 0 542 1 198 365 56 0 chr6 162709859 162709985 -19705257 - L2 LINE L2 -230 3042 2910 777 283 59 110 chr6 162711033 162711423 -19703819 + MLT1L LTR MaLR 110 584 -31 402 287 144 23 chr6 162711502 162711676 -19703566 + MIR3 SINE MIR 7 201 -7 2160 110 10 3 chr6 162712834 162713133 -19702109 - AluSq SINE Alu -12 301 1 240 111 0 0 chr6 162713669 162713714 -19701528 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 816 332 104 21 chr6 162714049 162714380 -19700862 + L2 LINE L2 2261 2563 -751 1921 134 25 35 chr6 162714380 162714694 -19700548 - AluSx SINE Alu -1 311 1 816 332 104 21 chr6 162714694 162715024 -19700218 + L2 LINE L2 2563 2977 -337 422 276 78 0 chr6 162715067 162715183 -19700059 - L2 LINE L2 0 3313 3189 486 263 26 53 chr6 162715347 162715499 -19699743 + L2 LINE L2 3124 3271 -1 274 270 118 33 chr6 162715641 162715793 -19699449 - L2 LINE L2 -1605 1709 1545 762 216 34 6 chr6 162715873 162716049 -19699193 + MER33 DNA MER1_type 6 186 -138 3686 142 42 32 chr6 162716078 162716700 -19698542 + MER82 DNA MER2_type 25 652 -1 545 190 28 21 chr6 162716700 162716828 -19698414 + MER33 DNA MER1_type 192 320 -4 22 0 0 0 chr6 162719024 162719046 -19696196 + AT_rich Low_complexity Low_complexity 1 22 0 1721 175 0 14 chr6 162720340 162720632 -19694610 - AluJb SINE Alu -24 288 1 386 300 14 21 chr6 162720738 162720878 -19694364 + MER117 DNA MER1_type 1 139 -58 632 246 97 64 chr6 162721761 162722091 -19693151 - MLT1J LTR MaLR -8 503 163 458 305 37 21 chr6 162722429 162722619 -19692623 + LTR16C LTR ERVL 299 491 0 270 292 50 33 chr6 162722622 162722742 -19692500 - MLT1J LTR MaLR -354 157 36 1654 178 3 32 chr6 162723333 162723647 -19691595 + AluJo SINE Alu 5 309 -3 343 197 0 0 chr6 162725172 162725238 -19690004 - Alu SINE Alu 0 302 237 189 0 0 0 chr6 162725279 162725300 -19689942 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1633 171 0 57 chr6 162725303 162725602 -19689640 - AluJo SINE Alu -30 282 1 21 0 0 0 chr6 162726112 162726133 -19689109 + AT_rich Low_complexity Low_complexity 1 21 0 603 204 0 8 chr6 162726452 162726584 -19688658 - L1MA4 LINE L1 -5 6295 6165 269 220 119 0 chr6 162726885 162726994 -19688248 - L1ME4a LINE L1 0 6121 6000 21 0 0 0 chr6 162727722 162727743 -19687499 + AT_rich Low_complexity Low_complexity 1 21 0 209 302 0 16 chr6 162727822 162727885 -19687357 - MIR3 SINE MIR -8 200 139 2395 180 40 4 chr6 162728203 162728653 -19686589 - MLT1C LTR MaLR 0 467 2 445 198 155 9 chr6 162728716 162728832 -19686410 - MIR SINE MIR -88 174 42 510 268 89 6 chr6 162728869 162729048 -19686194 - L2 LINE L2 -18 3295 3102 323 328 106 16 chr6 162730288 162730477 -19684765 - MIR SINE MIR -34 228 23 209 298 60 48 chr6 162730585 162730669 -19684573 - L2 LINE L2 -45 3227 3143 353 77 0 0 chr6 162730970 162731022 -19684220 - FAM SINE Alu -6 173 122 2491 87 81 0 chr6 162731270 162731640 -19683602 + L1PB1 LINE L1 5522 5921 -230 2538 266 94 14 chr6 162731747 162732642 -19682600 - L2 LINE L2 -1898 1416 451 2042 141 3 0 chr6 162732652 162732949 -19682293 - AluSx SINE Alu -10 302 5 23 33 0 0 chr6 162733107 162733137 -19682105 + AT_rich Low_complexity Low_complexity 1 30 0 1793 154 20 10 chr6 162733865 162734157 -19681085 + AluSx SINE Alu 1 295 -17 285 264 0 35 chr6 162734868 162734955 -19680287 + L2 LINE L2 3229 3312 -1 235 288 101 25 chr6 162735296 162735494 -19679748 + L1ME4a LINE L1 5905 6117 -4 654 222 100 123 chr6 162736572 162736923 -19678319 - MLT1H LTR MaLR -206 343 1 282 282 64 0 chr6 162737137 162737215 -19678027 - L2 LINE L2 -2 3311 3229 318 192 41 0 chr6 162737559 162737632 -19677610 - L1MB2 LINE L1 0 6171 6096 245 157 0 59 chr6 162737801 162737852 -19677390 + MLT1K LTR MaLR 224 271 -317 232 127 36 0 chr6 162737957 162738012 -19677230 + (TG)n Simple_repeat Simple_repeat 1 57 0 450 239 9 18 chr6 162738015 162738128 -19677114 + L2 LINE L2 3197 3308 -5 495 227 53 0 chr6 162738207 162738339 -19676903 + MER112 DNA MER1_type 77 215 -45 188 133 0 0 chr6 162739326 162739356 -19675886 + MIR SINE MIR 124 153 -109 6722 69 8 2 chr6 162739857 162741054 -19674188 + L1P3 LINE L1 4477 5677 -477 5545 245 56 31 chr6 162741162 162741984 -19673258 + L1M4 LINE L1 2772 3572 -2574 1608 253 46 36 chr6 162741984 162742482 -19672760 - MLT1D LTR MaLR -2 503 1 5545 245 56 31 chr6 162742482 162743173 -19672069 + L1M4 LINE L1 3572 4346 -1800 1899 159 21 0 chr6 162743173 162743463 -19671779 + AluJb SINE Alu 1 296 -16 5545 245 56 31 chr6 162743463 162743904 -19671338 + L1M4 LINE L1 4346 4775 -1371 2999 193 72 60 chr6 162744078 162744207 -19671035 - L1M4 LINE L1 -1333 4813 4687 2513 39 3 13 chr6 162744207 162744512 -19670730 - AluY SINE Alu -9 302 1 2999 193 72 60 chr6 162744512 162745289 -19669953 - L1M4 LINE L1 -1459 4687 3896 805 99 0 0 chr6 162745336 162745437 -19669805 - AluS SINE Alu -211 102 2 1387 247 63 18 chr6 162745468 162745895 -19669347 + LTR51 LTR ERV1 228 842 -81 189 328 70 31 chr6 162746080 162746208 -19669034 + L2 LINE L2 3180 3312 -1 200 337 35 41 chr6 162746660 162746829 -19668413 + L3b LINE CR1 1317 1484 -99 297 349 14 7 chr6 162746958 162747104 -19668138 - ERVL LTR ERVL -765 4999 4853 1743 214 95 31 chr6 162747540 162747961 -19667281 - LTR16A LTR ERVL -2 448 1 1206 307 70 29 chr6 162748583 162749243 -19665999 - ERVL LTR ERVL -867 4787 4102 647 193 20 7 chr6 162749249 162749399 -19665843 + Charlie1 DNA MER1_type 2610 2761 0 360 0 0 0 chr6 162749794 162749834 -19665408 + (TG)n Simple_repeat Simple_repeat 2 41 0 285 322 124 41 chr6 162750130 162750372 -19664870 + L2 LINE L2 2562 2823 -491 1000 179 18 65 chr6 162750429 162750658 -19664584 + MER20 DNA MER1_type 1 218 -1 565 302 99 22 chr6 162750704 162751101 -19664141 + L2 LINE L2 2794 3270 -43 230 198 187 55 chr6 162752190 162752281 -19662961 + MER117 DNA MER1_type 1 103 -94 264 100 0 0 chr6 162752388 162752428 -19662814 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1762 149 4 0 chr6 162752433 162752702 -19662540 - AluJo SINE Alu -42 270 1 1741 170 3 3 chr6 162752870 162753176 -19662066 - AluSx SINE Alu 0 306 1 2394 84 3 0 chr6 162753454 162753750 -19661492 + AluSp SINE Alu 2 298 -15 189 121 0 0 chr6 162753890 162753923 -19661319 + (TG)n Simple_repeat Simple_repeat 2 34 0 2038 169 33 18 chr6 162754333 162754665 -19660577 + MER1B DNA MER1_type 1 337 0 36 0 0 0 chr6 162755010 162755046 -19660196 + AT_rich Low_complexity Low_complexity 1 36 0 2153 130 10 0 chr6 162755055 162755356 -19659886 + AluSx SINE Alu 1 304 -8 23 33 0 0 chr6 162755570 162755600 -19659642 + AT_rich Low_complexity Low_complexity 1 30 0 311 254 0 51 chr6 162755609 162755727 -19659515 - L1ME4a LINE L1 -28 6093 5982 1184 134 8 117 chr6 162756148 162756387 -19658855 + MER41C LTR ERV1 2 214 -340 2228 118 0 0 chr6 162757111 162757408 -19657834 + AluSx SINE Alu 3 299 -13 270 257 0 0 chr6 162758117 162758187 -19657055 + L2 LINE L2 2323 2392 -922 2144 101 3 14 chr6 162758769 162759066 -19656176 + AluSp SINE Alu 1 294 -19 240 35 0 0 chr6 162761475 162761504 -19653738 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2196 114 0 3 chr6 162761509 162761799 -19653443 - AluSx SINE Alu -23 289 1 2041 133 0 26 chr6 162762332 162762683 -19652559 + AluSq SINE Alu 1 313 0 186 133 0 0 chr6 162763714 162763744 -19651498 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr6 162763746 162763767 -19651475 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1757 146 12 0 chr6 162763779 162764033 -19651209 - AluSx SINE Alu -55 257 1 22 0 0 0 chr6 162765516 162765538 -19649704 + AT_rich Low_complexity Low_complexity 1 22 0 2261 50 7 26 chr6 162766229 162766532 -19648710 - AluY SINE Alu -14 297 1 2048 114 17 7 chr6 162766638 162766928 -19648314 - AluSx SINE Alu -18 294 2 180 0 0 0 chr6 162767591 162767611 -19647631 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2146 34 45 4 chr6 162767611 162767875 -19647367 - AluY SINE Alu -36 275 1 313 335 54 41 chr6 162768045 162768266 -19646976 - L2 LINE L2 -62 3210 2987 292 264 0 35 chr6 162770075 162770162 -19645080 - L2 LINE L2 -1 3312 3229 1859 143 20 17 chr6 162770871 162771165 -19644077 - AluSx SINE Alu -17 295 1 248 263 126 11 chr6 162771646 162771741 -19643501 - MIR SINE MIR -116 146 41 1658 163 61 7 chr6 162773519 162773814 -19641428 + AluJb SINE Alu 1 311 -1 315 293 108 42 chr6 162774534 162774746 -19640496 + MIR SINE MIR 20 245 -17 26 50 0 0 chr6 162776148 162776188 -19639054 + AT_rich Low_complexity Low_complexity 1 40 0 1016 196 5 23 chr6 162776759 162776973 -19638269 - MER6B DNA MER2_type 0 210 1 271 215 0 0 chr6 162776986 162777051 -19638191 + A-rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr6 162777661 162777683 -19637559 + AT_rich Low_complexity Low_complexity 1 22 0 230 327 98 46 chr6 162778023 162778176 -19637066 - MIR SINE MIR -82 180 20 2092 128 0 26 chr6 162778183 162778495 -19636747 - AluSg SINE Alu -6 304 1 2002 104 0 119 chr6 162778559 162778904 -19636338 - AluSx SINE Alu -8 304 1 21 0 0 0 chr6 162780220 162780241 -19635001 + AT_rich Low_complexity Low_complexity 1 21 0 953 109 0 0 chr6 162781201 162781339 -19633903 - AluSg/x SINE Alu -10 302 165 425 81 81 27 chr6 162782262 162782285 -19632957 + MADE1 DNA Mariner 3 23 -57 2172 113 6 31 chr6 162782285 162782605 -19632637 - AluSq SINE Alu -1 312 1 425 81 81 27 chr6 162782605 162782655 -19632587 + MADE1 DNA Mariner 23 80 0 293 259 130 37 chr6 162782819 162782927 -19632315 - MIR SINE MIR -111 151 34 2350 103 0 0 chr6 162783018 162783318 -19631924 + AluSq SINE Alu 1 300 -13 210 37 0 0 chr6 162783321 162783348 -19631894 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2020 147 76 15 chr6 162784299 162784640 -19630602 + THE1B LTR MaLR 3 364 0 228 234 0 0 chr6 162784692 162784739 -19630503 + (CA)n Simple_repeat Simple_repeat 1 47 0 2324 121 0 3 chr6 162787007 162787320 -19627922 - AluSx SINE Alu 0 312 1 1125 153 11 11 chr6 162788593 162788782 -19626460 + AluSg/x SINE Alu 116 304 -6 21 0 0 0 chr6 162790683 162790704 -19624538 + AT_rich Low_complexity Low_complexity 1 21 0 952 208 56 0 chr6 162790714 162790911 -19624331 - MER58A DNA MER1_type -4 220 13 339 191 52 7 chr6 162791052 162791188 -19624054 + (TA)n Simple_repeat Simple_repeat 2 143 0 274 416 75 6 chr6 162792258 162792419 -19622823 + L2 LINE L2 3101 3272 0 240 122 0 0 chr6 162794229 162794270 -19620972 + (TG)n Simple_repeat Simple_repeat 2 42 0 889 313 74 62 chr6 162794270 162795324 -19619918 + L2 LINE L2 2238 3312 -1 271 267 23 12 chr6 162795378 162795464 -19619778 - MIR SINE MIR -94 168 82 399 359 131 22 chr6 162795469 162796112 -19619130 - L2 LINE L2 0 3272 2554 23 0 0 0 chr6 162796368 162796391 -19618851 + AT_rich Low_complexity Low_complexity 1 23 0 1915 49 0 0 chr6 162797142 162797430 -19617812 + AluY SINE Alu 59 346 0 853 295 46 46 chr6 162797478 162797824 -19617418 + LTR16C LTR ERVL 1 349 -142 2738 96 3 5 chr6 162797824 162798200 -19617042 + THE1C LTR MaLR 1 375 0 853 295 46 46 chr6 162798200 162798307 -19616935 + LTR16C LTR ERVL 348 454 -37 619 56 28 19 chr6 162798504 162798611 -19616631 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 1629 185 23 23 chr6 162799328 162799631 -19615611 - AluJo SINE Alu -9 303 1 2427 72 7 0 chr6 162799925 162800230 -19615012 + AluSp SINE Alu 3 309 -4 771 156 0 59 chr6 162800252 162800387 -19614855 + FLAM_C SINE Alu 2 128 -5 248 353 75 15 chr6 162800512 162800645 -19614597 + L2 LINE L2 3110 3250 -22 30 45 0 0 chr6 162802379 162802423 -19612819 + AT_rich Low_complexity Low_complexity 1 44 0 2187 127 3 3 chr6 162803572 162803880 -19611362 + AluSx SINE Alu 1 308 -4 230 180 0 0 chr6 162804143 162804193 -19611049 + L2 LINE L2 3179 3228 -85 632 227 0 8 chr6 162804835 162804963 -19610279 + L2 LINE L2 3187 3313 0 1059 56 0 21 chr6 162805017 162805161 -19610081 + THE1C LTR MaLR 1 141 -234 332 74 56 0 chr6 162805263 162805317 -19609925 + GA-rich Low_complexity Low_complexity 5 61 0 2266 110 0 10 chr6 162806585 162806893 -19608349 - AluSc SINE Alu 0 309 5 23 33 0 0 chr6 162807051 162807081 -19608161 + AT_rich Low_complexity Low_complexity 1 30 0 1258 134 0 0 chr6 162807809 162807988 -19607254 + AluJb SINE Alu 1 179 -133 22 0 0 0 chr6 162808092 162808114 -19607128 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr6 162808232 162808262 -19606980 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 2051 129 0 7 chr6 162808266 162808552 -19606690 - AluSx SINE Alu -28 284 1 393 241 103 14 chr6 162808978 162809123 -19606119 + MIR SINE MIR 105 262 0 2196 128 0 26 chr6 162809284 162809629 -19605613 - MER1B DNA MER1_type -1 336 1 2506 77 3 0 chr6 162810639 162810950 -19604292 + AluSx SINE Alu 1 312 0 288 0 0 0 chr6 162810952 162810984 -19604258 + (TA)n Simple_repeat Simple_repeat 2 33 0 383 362 20 59 chr6 162811102 162811254 -19603988 - L2 LINE L2 -1 3271 3126 303 296 25 0 chr6 162811372 162811453 -19603789 + MIR SINE MIR 163 245 -17 202 307 61 101 chr6 162811909 162812235 -19603007 + L2 LINE L2 2918 3230 -42 21 36 0 0 chr6 162812677 162812705 -19602537 + AT_rich Low_complexity Low_complexity 1 28 0 195 261 0 22 chr6 162812962 162813008 -19602234 + MIR SINE MIR 2 46 -216 379 343 86 41 chr6 162816628 162817336 -19597906 + L2 LINE L2 1774 2513 -801 463 358 9 30 chr6 162817347 162817579 -19597663 - MIR SINE MIR -15 247 21 243 189 0 0 chr6 162817686 162817739 -19597503 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 183 213 0 21 chr6 162817849 162817896 -19597346 + MIR SINE MIR 174 219 -43 2268 96 0 13 chr6 162817905 162818206 -19597036 + AluSx SINE Alu 1 297 -15 707 251 33 47 chr6 162819495 162819706 -19595536 - MIR SINE MIR -43 219 12 26 64 0 0 chr6 162820308 162820355 -19594887 + AT_rich Low_complexity Low_complexity 1 47 0 987 168 12 12 chr6 162821565 162821738 -19593504 - AluJo SINE Alu -18 294 122 712 219 0 0 chr6 162821770 162821898 -19593344 - AluJo SINE Alu -172 140 13 1021 195 0 5 chr6 162822512 162822717 -19592525 - L1PA13 LINE L1 -5 6158 5955 339 236 64 29 chr6 162823022 162823166 -19592076 - MER20B DNA MER1_type -29 190 39 366 298 61 106 chr6 162824116 162824361 -19590881 + L2 LINE L2 3031 3264 -8 225 94 0 0 chr6 162824883 162824915 -19590327 + (A)n Simple_repeat Simple_repeat 1 32 0 314 91 0 0 chr6 162825956 162826021 -19589221 + L1PA10 LINE L1 6105 6169 0 4015 44 2 2 chr6 162827138 162827636 -19587606 - L1PA7 LINE L1 0 6154 5657 2479 81 10 0 chr6 162828085 162828393 -19586849 - AluSx SINE Alu 0 312 2 261 327 70 30 chr6 162828463 162828662 -19586580 - MIR SINE MIR -54 208 2 247 65 43 22 chr6 162828729 162828775 -19586467 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 246 309 89 53 chr6 162830669 162830915 -19584327 + L2 LINE L2 2138 2392 -922 2399 100 7 0 chr6 162831032 162831333 -19583909 + AluSx SINE Alu 1 303 -9 28 0 0 0 chr6 162832053 162832081 -19583161 + AT_rich Low_complexity Low_complexity 1 28 0 2134 137 7 0 chr6 162833693 162834000 -19581242 + AluSx SINE Alu 1 309 -3 384 125 0 0 chr6 162836056 162836120 -19579122 + (GA)n Simple_repeat Simple_repeat 1 64 0 1864 162 0 3 chr6 162836750 162837047 -19578195 + AluJb SINE Alu 1 296 -16 327 118 0 55 chr6 162837318 162837428 -19577814 + (TA)n Simple_repeat Simple_repeat 2 105 0 189 0 0 0 chr6 162837428 162837449 -19577793 + (CA)n Simple_repeat Simple_repeat 2 22 0 1265 183 125 14 chr6 162838656 162839000 -19576242 + MER63 DNA MER1_type 675 1056 -6 427 289 126 5 chr6 162839239 162839429 -19575813 + L2 LINE L2 3095 3307 -6 2075 115 0 14 chr6 162839897 162840176 -19575066 + AluSx SINE Alu 1 275 -37 202 27 0 54 chr6 162840181 162840218 -19575024 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2336 92 0 3 chr6 162841071 162841374 -19573868 - AluSx SINE Alu -10 302 1 310 261 0 14 chr6 162841595 162841664 -19573578 - MIR SINE MIR -91 117 50 2286 93 3 3 chr6 162841983 162842283 -19572959 + AluSp SINE Alu 1 300 -13 650 205 0 8 chr6 162843586 162843708 -19571534 + 5S rRNA rRNA 1 121 0 224 91 23 0 chr6 162843719 162843763 -19571479 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1727 167 20 7 chr6 162843763 162844069 -19571173 + AluSx SINE Alu 2 311 -1 510 294 21 8 chr6 162844071 162844306 -19570936 + L1ME4a LINE L1 5615 5852 -269 1044 197 70 80 chr6 162844393 162844644 -19570598 - L1M4 LINE L1 -1164 4982 4735 228 67 0 0 chr6 162844644 162844674 -19570568 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1044 197 70 80 chr6 162844674 162844823 -19570419 - L1M4 LINE L1 -1411 4735 4586 272 181 205 0 chr6 162844831 162844958 -19570284 + L1M3 LINE L1 5287 5439 -895 276 53 0 0 chr6 162845021 162845059 -19570183 + (CA)n Simple_repeat Simple_repeat 1 38 0 1837 234 89 46 chr6 162845059 162845455 -19569787 + L1ME1 LINE L1 5436 5876 -290 2406 67 0 10 chr6 162845455 162845753 -19569489 + AluY SINE Alu 5 299 -12 1837 234 89 46 chr6 162845753 162846049 -19569193 + L1ME1 LINE L1 5876 6158 -8 2141 120 3 0 chr6 162846163 162846462 -19568780 - AluSx SINE Alu -12 300 1 207 0 0 0 chr6 162847297 162847320 -19567922 + (TA)n Simple_repeat Simple_repeat 2 24 0 1769 187 0 17 chr6 162847435 162847734 -19567508 + AluJo SINE Alu 3 296 -16 259 312 149 20 chr6 162847808 162847958 -19567284 - MIR SINE MIR -56 206 37 613 301 169 16 chr6 162848588 162848967 -19566275 + L2 LINE L2 1098 1534 -1780 252 143 0 0 chr6 162849101 162849143 -19566099 + (A)n Simple_repeat Simple_repeat 1 42 0 2985 99 27 2 chr6 162849163 162849608 -19565634 - MER4C LTR ERV1 -4 461 6 2320 68 0 0 chr6 162850528 162850838 -19564404 + AluY SINE Alu 1 310 0 25 51 0 0 chr6 162851031 162851070 -19564172 + AT_rich Low_complexity Low_complexity 1 39 0 28 0 0 0 chr6 162851087 162851115 -19564127 + AT_rich Low_complexity Low_complexity 1 28 0 1333 168 41 77 chr6 162851368 162851754 -19563488 + MER67C LTR ERV1 1 397 -243 280 133 167 17 chr6 162851900 162851960 -19563282 + MER39 LTR ERV1 1 69 -638 300 276 13 0 chr6 162851973 162852049 -19563193 + LTR48 LTR ERV1 157 233 -554 582 189 89 67 chr6 162852125 162852455 -19562787 + LTR48 LTR ERV1 240 787 0 10667 125 42 26 chr6 162853312 162853649 -19561593 + LTR49-int LTR ERV1 4328 4658 -1673 2063 157 0 0 chr6 162853649 162853942 -19561300 + AluSx SINE Alu 1 293 -19 10667 125 42 26 chr6 162853942 162854983 -19560259 + LTR49-int LTR ERV1 4658 5682 -649 2255 108 0 0 chr6 162854983 162855317 -19559925 - AluSq SINE Alu 0 334 1 10667 125 42 26 chr6 162855317 162855809 -19559433 + LTR49-int LTR ERV1 5682 6234 -97 1709 202 0 19 chr6 162855809 162856116 -19559126 - AluJo SINE Alu -7 305 5 10667 125 42 26 chr6 162856116 162856216 -19559026 + LTR49-int LTR ERV1 6234 6331 0 2246 144 144 18 chr6 162856216 162856724 -19558518 + LTR49 LTR ERV1 1 572 -23 814 291 136 39 chr6 162856779 162857485 -19557757 + L2 LINE L2 2542 3311 -2 234 345 0 11 chr6 162857884 162857971 -19557271 + L2 LINE L2 3228 3313 0 368 296 43 9 chr6 162857996 162858111 -19557131 + L2 LINE L2 3195 3313 0 23 0 0 0 chr6 162859503 162859526 -19555716 + AT_rich Low_complexity Low_complexity 1 23 0 233 234 223 0 chr6 162860623 162860717 -19554525 - L1MC5 LINE L1 -63 7898 7784 27 0 0 0 chr6 162860921 162860948 -19554294 + AT_rich Low_complexity Low_complexity 1 27 0 1013 199 13 8 chr6 162861826 162862062 -19553180 + L1MA4 LINE L1 6029 6265 -35 330 26 0 0 chr6 162862393 162862432 -19552810 + (TAA)n Simple_repeat Simple_repeat 2 40 0 521 275 36 0 chr6 162862448 162862586 -19552656 - MIR SINE MIR -31 231 89 225 290 221 23 chr6 162864541 162864672 -19550570 + MER5A DNA MER1_type 17 173 -16 * 579 248 0 0 chr6 162864574 162864687 -19550555 - MER5A DNA MER1_type -63 126 14 24 77 0 0 chr6 162865195 162865247 -19549995 + AT_rich Low_complexity Low_complexity 1 52 0 22 56 0 0 chr6 162866089 162866125 -19549117 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr6 162868715 162868753 -19546489 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr6 162868915 162868948 -19546294 + AT_rich Low_complexity Low_complexity 1 33 0 1867 180 3 0 chr6 162869606 162869912 -19545330 - AluJo SINE Alu -5 307 1 1391 193 57 14 chr6 162870195 162870475 -19544767 + AluJb SINE Alu 1 292 -20 317 279 158 32 chr6 162870573 162870763 -19544479 + MIR SINE MIR 4 217 -45 22 0 0 0 chr6 162870840 162870862 -19544380 + AT_rich Low_complexity Low_complexity 1 22 0 503 136 0 25 chr6 162871263 162871344 -19543898 + AluS SINE Alu 220 298 -11 231 312 75 11 chr6 162871870 162871963 -19543279 + MIR SINE MIR 41 139 -123 557 388 33 8 chr6 162872211 162872451 -19542791 + MIR SINE MIR 6 251 -11 815 152 7 22 chr6 162872702 162872840 -19542402 - AluJo SINE Alu -176 136 1 29 0 0 0 chr6 162872840 162872869 -19542373 + AT_rich Low_complexity Low_complexity 1 29 0 2273 97 0 3 chr6 162873879 162874178 -19541064 - AluSc SINE Alu -11 298 1 208 289 36 48 chr6 162874725 162874808 -19540434 + MIR3 SINE MIR 89 170 -38 377 318 46 28 chr6 162875089 162875306 -19539936 + MIR SINE MIR 32 252 -10 31 0 0 0 chr6 162875919 162875950 -19539292 + AT_rich Low_complexity Low_complexity 1 31 0 1792 174 3 3 chr6 162875980 162876267 -19538975 + AluJo SINE Alu 6 292 -20 404 255 10 0 chr6 162876346 162876448 -19538794 - L1ME3A LINE L1 -5 6165 6063 22 70 0 0 chr6 162876458 162876501 -19538741 + AT_rich Low_complexity Low_complexity 1 43 0 2366 63 0 0 chr6 162876589 162876875 -19538367 - AluY SINE Alu -25 286 1 985 164 188 8 chr6 162877955 162878211 -19537031 - L1MA9 LINE L1 -10 6302 6001 22 0 0 0 chr6 162878443 162878465 -19536777 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 162879420 162879440 -19535802 + (T)n Simple_repeat Simple_repeat 1 20 0 447 329 58 12 chr6 162880222 162880462 -19534780 - MIR SINE MIR -2 260 10 1792 156 14 3 chr6 162881871 162882182 -19533060 + AluJo SINE Alu 1 314 0 2800 77 3 13 chr6 162883315 162883692 -19531550 + THE1C LTR MaLR 3 375 0 196 294 29 78 chr6 162884742 162884780 -19530462 - MIR SINE MIR -65 197 159 2163 119 6 6 chr6 162884780 162885092 -19530150 - AluSx SINE Alu 0 312 1 196 294 29 78 chr6 162885092 162885155 -19530087 - MIR SINE MIR -103 159 101 187 322 0 46 chr6 162885200 162885287 -19529955 - MIR SINE MIR -62 200 118 180 111 0 0 chr6 162885313 162885340 -19529902 + (A)n Simple_repeat Simple_repeat 1 27 0 214 323 32 43 chr6 162886358 162886451 -19528791 + L2 LINE L2 3116 3207 -65 296 326 0 0 chr6 162887472 162887564 -19527678 + (CA)n Simple_repeat Simple_repeat 1 92 0 1341 214 13 22 chr6 162887599 162887912 -19527330 + MLT1A2 LTR MaLR 65 374 0 21 36 0 0 chr6 162891008 162891036 -19524206 + AT_rich Low_complexity Low_complexity 1 28 0 204 40 0 0 chr6 162891041 162891066 -19524176 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 240 188 52 10 chr6 162891218 162891314 -19523928 + (TA)n Simple_repeat Simple_repeat 2 101 0 2312 90 3 10 chr6 162894111 162894421 -19520821 - AluSg SINE Alu -2 308 1 215 278 19 0 chr6 162894577 162894631 -19520611 + CT-rich Low_complexity Low_complexity 3 57 0 21 57 0 0 chr6 162895330 162895365 -19519877 + AT_rich Low_complexity Low_complexity 1 35 0 391 295 13 13 chr6 162895601 162895757 -19519485 - L1ME4a LINE L1 -227 5894 5739 780 280 132 3 chr6 162945979 162946275 -19468967 + L2 LINE L2 2355 2688 -626 1831 176 16 0 chr6 162946316 162946623 -19468619 + AluJb SINE Alu 1 312 0 335 299 16 16 chr6 162946753 162946880 -19468362 + L1M4 LINE L1 3334 3460 -2686 586 290 30 71 chr6 162946880 162947245 -19467997 - L2 LINE L2 -62 3251 2902 * 645 228 180 40 chr6 162947244 162947494 -19467748 + L2 LINE L2 3025 3309 -4 * 1833 266 108 12 chr6 162947486 162947541 -19467701 - L2 LINE L2 -1222 2092 2044 1510 143 16 37 chr6 162947541 162947786 -19467456 - AluJo SINE Alu -67 245 6 1833 266 108 12 chr6 162947786 162948369 -19466873 - L2 LINE L2 -1270 2044 1393 241 243 257 0 chr6 162949095 162949169 -19466073 + MIR SINE MIR 32 124 -84 1758 176 3 35 chr6 162950157 162950476 -19464766 - AluJo SINE Alu -3 309 1 1332 271 178 9 chr6 162952168 162952703 -19462539 - L2 LINE L2 -2132 1182 558 573 228 99 12 chr6 162952861 162953032 -19462210 + MIR SINE MIR 73 258 -4 1937 143 0 7 chr6 162953577 162953863 -19461379 + AluSx SINE Alu 1 284 -28 186 288 64 56 chr6 162954580 162954705 -19460537 + L2 LINE L2 3188 3313 0 371 239 0 46 chr6 162954798 162954907 -19460335 + L1PB4 LINE L1 6053 6156 0 409 231 4 10 chr6 162955847 162955995 -19459247 - HERVH LTR ERV1 -7267 446 352 1466 186 124 17 chr6 162956004 162956407 -19458835 - HERVH LTR ERV1 -7267 446 1 1743 153 140 32 chr6 162956407 162956813 -19458429 - LTR7 LTR ERV1 0 450 1 1101 160 35 0 chr6 162956825 162957025 -19458217 + MER2 DNA MER2_type 2 208 -137 894 211 28 6 chr6 162957189 162957369 -19457873 + MER5A DNA MER1_type 6 189 0 250 325 106 26 chr6 162957386 162957537 -19457705 - L2 LINE L2 -200 3072 2910 256 258 4 50 chr6 162957700 162957801 -19457441 - MIR SINE MIR -113 95 2 252 380 37 9 chr6 162958061 162958169 -19457073 - L2 LINE L2 0 3272 3162 2433 81 0 0 chr6 162959062 162959358 -19455884 - AluY SINE Alu -15 296 1 3096 75 39 0 chr6 162959665 162960103 -19455139 + L1PA11 LINE L1 5717 6171 -3 2185 110 0 31 chr6 162960917 162961236 -19454006 - AluSc SINE Alu 0 309 1 12100 144 28 34 chr6 162961396 162963689 -19451553 + HERVH LTR ERV1 2470 4842 -2871 457 183 0 0 chr6 162963664 162963746 -19451496 + HERVH LTR ERV1 6646 6727 -986 * 2014 180 108 47 chr6 162963746 162964262 -19450980 + LTR10A LTR ERV1 1 548 -61 1459 111 37 0 chr6 162964275 162964492 -19450750 + HERVH LTR ERV1 6724 6948 -765 303 95 16 79 chr6 162964478 162964541 -19450701 + HERVH LTR ERV1 7655 7713 0 * 3331 103 58 10 chr6 162964542 162965058 -19450184 + HERVH LTR ERV1 7173 7713 0 1883 172 105 29 chr6 162965058 162965476 -19449766 + LTR7 LTR ERV1 1 450 0 250 274 16 0 chr6 162965495 162965557 -19449685 + L2 LINE L2 3204 3266 -6 186 118 0 0 chr6 162966253 162966287 -19448955 + (CA)n Simple_repeat Simple_repeat 1 34 0 201 365 12 0 chr6 162966528 162966613 -19448629 - L2 LINE L2 -3 3310 3225 2488 63 0 7 chr6 162968976 162969279 -19445963 + AluY SINE Alu 3 303 -8 387 251 117 34 chr6 162969641 162969759 -19445483 + L1ME4a LINE L1 5535 5674 -447 1990 144 3 3 chr6 162969759 162970065 -19445177 + AluSx SINE Alu 1 306 -6 387 251 117 34 chr6 162970065 162970125 -19445117 + L1ME4a LINE L1 5674 5728 -393 371 287 91 52 chr6 162970191 162970421 -19444821 + L1ME4a LINE L1 5865 6103 -18 381 153 0 14 chr6 162972735 162972807 -19442435 + L1MA4 LINE L1 5942 6012 -288 323 27 0 0 chr6 162973985 162974022 -19441220 - tRNA-Tyr-TAC tRNA tRNA -39 37 1 411 256 139 74 chr6 162974387 162974711 -19440531 - MARNA DNA Mariner -219 367 23 1018 154 0 25 chr6 162974829 162975025 -19440217 - AluSg/x SINE Alu 0 315 124 744 132 0 0 chr6 162975077 162975183 -19440059 - AluSq/x SINE Alu -207 106 1 186 43 0 0 chr6 162975774 162975797 -19439445 + (CA)n Simple_repeat Simple_repeat 1 23 0 2304 104 0 19 chr6 162977545 162977863 -19437379 - AluSx SINE Alu 0 312 1 744 251 44 11 chr6 162981271 162981454 -19433788 + MER5A DNA MER1_type 1 189 0 960 239 56 28 chr6 162981535 162981661 -19433581 + MLT1B LTR MaLR 15 136 -254 1888 132 46 0 chr6 162981661 162981941 -19433301 - AluSx SINE Alu -19 293 1 960 239 56 28 chr6 162981941 162981970 -19433272 + MLT1B LTR MaLR 136 163 -227 7166 48 6 0 chr6 162981970 162982942 -19432300 + L1PA7 LINE L1 5175 6151 -3 960 239 56 28 chr6 162982942 162983217 -19432025 + MLT1B LTR MaLR 163 390 0 2264 123 0 0 chr6 162983249 162983559 -19431683 + AluSx SINE Alu 3 312 0 353 304 40 53 chr6 162983789 162984016 -19431226 + MER102a DNA MER1_type 107 330 0 1598 166 81 7 chr6 162984885 162985053 -19430189 - AluJb SINE Alu -5 307 108 207 0 0 0 chr6 162985053 162985076 -19430166 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1598 166 81 7 chr6 162985076 162985191 -19430051 - AluJb SINE Alu -204 108 3 7600 208 53 68 chr6 162985699 162986542 -19428700 + L1MC4a LINE L1 5550 6404 -1404 2504 146 26 5 chr6 162986542 162986961 -19428281 + MSTA LTR MaLR 1 428 0 7600 208 53 68 chr6 162986961 162987234 -19428008 + L1MC4a LINE L1 6404 6680 -1128 1780 40 0 13 chr6 162987234 162987460 -19427782 + L1PA4 LINE L1 5932 6154 -1 7600 208 53 68 chr6 162987460 162988635 -19426607 + L1MC4a LINE L1 6680 7807 -1 779 294 86 26 chr6 162989414 162990360 -19424882 - L1ME3A LINE L1 -226 5944 4940 7481 158 22 6 chr6 162990388 162992675 -19422567 - L1PB3 LINE L1 0 6154 3833 1010 268 48 74 chr6 162992913 162993416 -19421826 - LTR16C LTR ERVL 0 491 2 211 114 29 0 chr6 162994518 162994553 -19420689 + CT-rich Low_complexity Low_complexity 1 36 0 207 88 0 0 chr6 162996603 162996637 -19418605 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 274 333 75 25 chr6 162997285 162997444 -19417798 + MIR SINE MIR 96 262 0 1587 239 33 65 chr6 162997833 162998512 -19416730 - MER77 LTR ERV1 0 605 1 1604 196 47 25 chr6 162998801 162998929 -19416313 + Tigger7 DNA MER2_type 5 129 -2358 2355 74 0 7 chr6 162998929 162999228 -19416014 - AluY SINE Alu -14 297 1 1604 196 47 25 chr6 162999228 162999421 -19415821 + Tigger7 DNA MER2_type 129 333 -2154 3139 170 9 12 chr6 162999521 163000104 -19415138 - L1MB2 LINE L1 -32 6139 5559 1047 241 13 0 chr6 163001468 163001700 -19413542 + L2 LINE L2 2452 2686 -628 448 258 7 66 chr6 163001709 163001860 -19413382 + L2 LINE L2 3172 3313 0 1985 147 3 0 chr6 163001880 163002166 -19413076 + AluSx SINE Alu 1 287 -25 396 103 0 0 chr6 163002166 163002224 -19413018 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 753 121 43 14 chr6 163002458 163002598 -19412644 - L1MA9 LINE L1 0 6312 6169 1003 215 0 19 chr6 163002974 163003183 -19412059 + MLT1B LTR MaLR 1 205 -185 543 170 20 0 chr6 163003215 163003315 -19411927 + MLT1B LTR MaLR 364 465 -2 617 64 35 41 chr6 163004322 163004493 -19410749 + (TA)n Simple_repeat Simple_repeat 2 171 0 303 332 136 10 chr6 163004637 163004836 -19410406 + L2 LINE L2 2346 2569 -745 23 78 0 0 chr6 163005437 163005488 -19409754 + AT_rich Low_complexity Low_complexity 1 51 0 792 32 0 0 chr6 163005691 163005786 -19409456 - L1P LINE L1 -1912 4234 4140 379 264 67 22 chr6 163006150 163006328 -19408914 + L1ME LINE L1 5585 5770 -351 205 309 105 66 chr6 163006841 163006993 -19408249 + L2 LINE L2 3108 3265 -7 1783 263 50 29 chr6 163008526 163009107 -19406135 + MLT1E LTR MaLR 1 593 0 1405 189 0 55 chr6 163009160 163009468 -19405774 - L1 LINE L1 -1527 4619 4330 2429 91 0 0 chr6 163009468 163009776 -19405466 + AluY SINE Alu 1 308 -3 1405 189 0 55 chr6 163009776 163009811 -19405431 - L1 LINE L1 -1816 4330 4295 912 140 13 0 chr6 163009811 163009967 -19405275 + L1PA16 LINE L1 6005 6163 -3 197 256 0 0 chr6 163010190 163010233 -19405009 + L2 LINE L2 3183 3225 -88 229 238 205 26 chr6 163010472 163010623 -19404619 - MIR SINE MIR -5 257 80 1620 162 3 111 chr6 163011628 163012017 -19403225 + MER7A DNA MER2_type 1 345 -1 2017 144 0 0 chr6 163013301 163013586 -19401656 + AluSx SINE Alu 3 287 -25 711 245 60 66 chr6 163014302 163014604 -19400638 + MLT1H LTR MaLR 1 300 -249 222 37 0 0 chr6 163014958 163014985 -19400257 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 362 250 137 36 chr6 163014987 163015237 -19400005 + MLT1H1 LTR MaLR 256 555 0 238 286 22 11 chr6 163015237 163015328 -19399914 + MLT1H-int LTR MaLR 1 92 -1643 956 194 0 5 chr6 163015721 163015907 -19399335 - L1MA9 LINE L1 -362 5950 5766 708 143 40 0 chr6 163015912 163016038 -19399204 + L1MA9 LINE L1 6182 6312 0 360 290 92 92 chr6 163016391 163016729 -19398513 + MLT1H-int LTR MaLR 1033 1370 -1 612 273 90 27 chr6 163016766 163017122 -19398120 + MLT1H LTR MaLR 47 382 -160 341 200 22 22 chr6 163017339 163017430 -19397812 + MLT1H LTR MaLR 452 595 0 181 224 17 52 chr6 163017546 163017604 -19397638 - L3 LINE CR1 -897 680 625 676 235 15 0 chr6 163017977 163018113 -19397129 - MER20 DNA MER1_type -4 215 78 27 29 0 0 chr6 163018373 163018407 -19396835 + AT_rich Low_complexity Low_complexity 1 34 0 1144 222 0 16 chr6 163018643 163018895 -19396347 + MER46C DNA MER2_type 85 332 -6 185 347 31 10 chr6 163019428 163019526 -19395716 - L2 LINE L2 0 3272 3173 197 151 19 0 chr6 163020518 163020571 -19394671 + (TA)n Simple_repeat Simple_repeat 2 55 0 434 335 54 27 chr6 163021138 163021362 -19393880 - MIR SINE MIR -30 232 3 446 285 40 30 chr6 163021849 163022203 -19393039 - LTR16A LTR ERVL 0 450 60 2056 159 15 3 chr6 163023350 163023690 -19391552 + MER7A DNA MER2_type 5 346 0 12672 208 47 41 chr6 163024185 163027061 -19388181 + L1M2 LINE L1 1 2857 -4394 431 18 18 0 chr6 163027061 163027117 -19388125 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 227 179 179 0 chr6 163027120 163027176 -19388066 - AluJ/FRAM SINE Alu -20 282 217 12672 208 47 41 chr6 163027176 163027231 -19388011 + L1M2 LINE L1 2858 2911 -4340 1478 159 34 26 chr6 163027231 163027495 -19387747 - AluJo SINE Alu -46 266 1 12672 208 47 41 chr6 163027495 163028164 -19387078 + L1M2 LINE L1 2911 3574 -3677 2057 133 0 40 chr6 163028164 163028488 -19386754 + AluSx SINE Alu 1 311 -1 12672 208 47 41 chr6 163028488 163030762 -19384480 + L1M2 LINE L1 3574 6730 -521 1122 31 0 0 chr6 163030762 163030892 -19384350 + L1PA7 LINE L1 6010 6139 -15 225 0 0 0 chr6 163031146 163031171 -19384071 + (CA)n Simple_repeat Simple_repeat 2 26 0 445 100 82 73 chr6 163031607 163031717 -19383525 + L1MA9 LINE L1 6202 6312 0 1913 145 3 0 chr6 163032426 163032708 -19382534 - AluJb SINE Alu -27 285 3 442 320 25 66 chr6 163032850 163033094 -19382148 + MIR SINE MIR 26 259 -3 197 250 0 0 chr6 163034008 163034052 -19381190 - L2 LINE L2 -8 3264 3221 1096 190 86 10 chr6 163034981 163035078 -19380164 - L1MA9 LINE L1 -38 6274 6186 336 48 0 0 chr6 163035078 163035120 -19380122 + (TG)n Simple_repeat Simple_repeat 1 42 0 1096 190 86 10 chr6 163035120 163035383 -19379859 - L1MA9 LINE L1 -126 6186 5748 1953 157 0 19 chr6 163036366 163036684 -19378558 - AluSx SINE Alu 0 312 1 791 201 26 0 chr6 163036699 163036853 -19378389 - FAM SINE Alu -17 158 1 725 177 152 0 chr6 163037158 163037322 -19377920 + MER5A DNA MER1_type 1 189 0 531 246 42 14 chr6 163037403 163037545 -19377697 + MIR SINE MIR 88 233 -29 187 227 121 0 chr6 163040612 163040678 -19374564 - MIR SINE MIR -67 141 68 2496 20 3 0 chr6 163041266 163041560 -19373682 - L1PA4 LINE L1 -3 6152 5858 311 224 0 0 chr6 163042237 163042304 -19372938 - L1MC4 LINE L1 -1339 6703 6637 21 0 0 0 chr6 163042367 163042388 -19372854 + AT_rich Low_complexity Low_complexity 1 21 0 237 191 16 16 chr6 163042958 163043021 -19372221 + T-rich Low_complexity Low_complexity 6 68 0 303 379 71 18 chr6 163043398 163043567 -19371675 + MER5A DNA MER1_type 10 187 -2 750 280 56 22 chr6 163043715 163043947 -19371295 + MIR SINE MIR 23 262 0 2196 80 10 3 chr6 163045434 163045734 -19369508 + AluY SINE Alu 3 304 -7 485 209 8 30 chr6 163046246 163046380 -19368862 - L1MD2 LINE L1 -12 6347 6217 2132 138 3 0 chr6 163046391 163046702 -19368540 + AluSx SINE Alu 1 312 0 1579 236 87 70 chr6 163047174 163047588 -19367654 + MLT1G1 LTR MaLR 1 429 -166 5838 124 19 0 chr6 163047588 163048813 -19366429 - L1PA15 LINE L1 0 6165 4927 1579 236 87 70 chr6 163048813 163048983 -19366259 + MLT1G1 LTR MaLR 429 595 0 325 341 22 14 chr6 163049780 163049918 -19365324 + MER5A DNA MER1_type 29 167 -22 193 116 23 23 chr6 163050554 163050597 -19364645 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 26 0 0 0 chr6 163050640 163050666 -19364576 + AT_rich Low_complexity Low_complexity 1 26 0 719 253 21 5 chr6 163050671 163050857 -19364385 - L1PB4 LINE L1 -3 6153 5965 272 234 168 37 chr6 163051449 163051556 -19363686 + MIR SINE MIR 65 185 -77 756 243 49 36 chr6 163052083 163052330 -19362912 + MIR SINE MIR 2 251 -11 249 83 0 0 chr6 163052331 163052367 -19362875 + (GA)n Simple_repeat Simple_repeat 1 36 0 1276 165 161 4 chr6 163052522 163052782 -19362460 - AluJo SINE Alu -1 301 1 434 298 63 28 chr6 163052916 163053028 -19362214 - L1MC4a LINE L1 -1966 5842 5735 2775 98 0 8 chr6 163053028 163053406 -19361836 + THE1C LTR MaLR 1 375 0 434 298 63 28 chr6 163053406 163053548 -19361694 - L1MC4a LINE L1 -2073 5735 5579 205 138 17 17 chr6 163053974 163054032 -19361210 + (TG)n Simple_repeat Simple_repeat 1 58 0 276 30 0 0 chr6 163054732 163054765 -19360477 + (CA)n Simple_repeat Simple_repeat 1 33 0 23 33 0 0 chr6 163054866 163054896 -19360346 + AT_rich Low_complexity Low_complexity 1 30 0 298 255 59 0 chr6 163055424 163055526 -19359716 - L1ME LINE L1 -309 5812 5705 1348 152 172 8 chr6 163057032 163057288 -19357954 - AluSg SINE Alu -2 298 1 23 33 0 0 chr6 163057438 163057468 -19357774 + AT_rich Low_complexity Low_complexity 1 30 0 1460 163 116 11 chr6 163058008 163058181 -19357061 - AluJo SINE Alu -6 306 92 243 0 0 0 chr6 163058181 163058208 -19357034 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1460 163 116 11 chr6 163058208 163058311 -19356931 - AluJo SINE Alu -220 92 1 26 64 0 0 chr6 163058540 163058587 -19356655 + AT_rich Low_complexity Low_complexity 1 47 0 1889 201 0 2 chr6 163058906 163059299 -19355943 - L1PA16 LINE L1 -1433 4713 4322 5236 117 15 60 chr6 163059299 163060807 -19354435 + L1PA16 LINE L1 4699 6163 -3 2057 172 86 18 chr6 163060933 163061329 -19353913 + MER6 DNA MER2_type 179 861 -4 2068 97 17 7 chr6 163061383 163061672 -19353570 + AluY SINE Alu 1 292 -19 382 325 63 31 chr6 163061761 163061952 -19353290 + MIR SINE MIR 19 215 -47 298 345 108 22 chr6 163062307 163062539 -19352703 + L3 LINE CR1 1164 1415 -162 522 274 34 11 chr6 163062733 163062908 -19352334 + L2 LINE L2 1700 1878 -1436 830 307 85 29 chr6 163062910 163063392 -19351850 + L2 LINE L2 1811 2319 -995 342 293 75 0 chr6 163063468 163063601 -19351641 + L2 LINE L2 2930 3072 -241 287 233 23 12 chr6 163063886 163063972 -19351270 + MIR3 SINE MIR 122 208 0 261 0 0 0 chr6 163064181 163064210 -19351032 + (A)n Simple_repeat Simple_repeat 1 29 0 1920 123 53 13 chr6 163064338 163064638 -19350604 - AluSx SINE Alu 0 312 1 1421 177 0 37 chr6 163065363 163065634 -19349608 - AluJb SINE Alu -16 296 36 2710 98 28 14 chr6 163066178 163066537 -19348705 + THE1B LTR MaLR 1 364 0 1655 177 33 111 chr6 163070223 163070646 -19344596 + MLT1B LTR MaLR 1 390 0 224 227 45 0 chr6 163070882 163070948 -19344294 + GA-rich Low_complexity Low_complexity 4 72 0 202 167 33 0 chr6 163071779 163071839 -19343403 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 32 0 0 chr6 163071882 163071913 -19343329 + AT_rich Low_complexity Low_complexity 1 31 0 306 168 0 28 chr6 163072023 163072130 -19343112 + (TA)n Simple_repeat Simple_repeat 2 105 0 267 176 66 77 chr6 163072130 163072221 -19343021 - L1MC4 LINE L1 -1339 6703 6614 211 82 0 82 chr6 163072237 163072286 -19342956 + (TATG)n Simple_repeat Simple_repeat 4 48 0 309 51 0 0 chr6 163072368 163072407 -19342835 + (TG)n Simple_repeat Simple_repeat 2 40 0 1894 177 0 3 chr6 163072507 163072807 -19342435 - AluJb SINE Alu -9 303 5 1650 166 35 45 chr6 163072865 163073179 -19342063 + AluJb SINE Alu 1 311 -1 684 215 7 0 chr6 163073181 163073330 -19341912 + GA-rich Low_complexity Low_complexity 3 152 0 2349 52 0 24 chr6 163074830 163075144 -19340098 - AluY SINE Alu 0 308 2 2396 93 0 0 chr6 163075165 163075475 -19339767 - AluY SINE Alu -1 310 1 5363 98 12 0 chr6 163075636 163076363 -19338879 + L1PA8A LINE L1 5396 6131 0 265 320 46 85 chr6 163076733 163076844 -19338398 + MIR3 SINE MIR 35 140 -68 2075 133 3 0 chr6 163076844 163077144 -19338098 + AluSc SINE Alu 1 301 -8 265 320 46 85 chr6 163077144 163077185 -19338057 + MIR3 SINE MIR 140 181 -27 38431 90 11 8 chr6 163077192 163083321 -19331921 + L1PA6 LINE L1 11 6154 0 21 0 0 0 chr6 163083519 163083540 -19331702 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 163083859 163083888 -19331354 + AT_rich Low_complexity Low_complexity 1 29 0 1913 162 3 10 chr6 163084483 163084792 -19330450 + AluJo SINE Alu 1 307 -5 412 252 42 25 chr6 163085003 163085122 -19330120 + MER45 DNA AcHobo 1 121 -919 226 329 24 0 chr6 163085303 163085385 -19329857 + MIR3 SINE MIR 100 183 -25 242 296 120 16 chr6 163085608 163085733 -19329509 + L2 LINE L2 3176 3313 0 308 336 31 87 chr6 163085794 163086023 -19329219 - L2 LINE L2 -50 3222 3007 235 109 0 36 chr6 163086532 163086587 -19328655 + (CAA)n Simple_repeat Simple_repeat 2 54 0 270 0 0 0 chr6 163087240 163087270 -19327972 + (CA)n Simple_repeat Simple_repeat 1 30 0 1404 274 128 8 chr6 163088329 163088952 -19326290 + L2 LINE L2 1958 2655 -659 25 31 0 0 chr6 163088952 163088984 -19326258 + AT_rich Low_complexity Low_complexity 1 32 0 265 320 109 46 chr6 163088984 163089268 -19325974 - L2 LINE L2 -4 3309 3008 5597 92 14 1 chr6 163090462 163091233 -19324009 - L1PA13 LINE L1 -4 6159 5379 3749 146 18 35 chr6 163091235 163091987 -19323255 + L1P LINE L1 4678 5419 -753 278 196 18 0 chr6 163093390 163093446 -19321796 - 7SK RNA RNA -5 188 132 221 299 34 60 chr6 163094082 163094199 -19321043 - MIR SINE MIR -65 197 84 226 342 17 25 chr6 163094529 163094649 -19320593 - MIR SINE MIR -64 198 80 2056 108 3 24 chr6 163095560 163095856 -19319386 + AluSx SINE Alu 1 290 -22 2046 122 30 3 chr6 163097506 163097802 -19317440 - AluSx SINE Alu -8 304 1 231 114 0 0 chr6 163097819 163097854 -19317388 + (G)n Simple_repeat Simple_repeat 1 35 0 393 339 66 63 chr6 163099291 163100129 -19315113 - L2 LINE L2 -39 3233 2395 254 333 15 0 chr6 163100791 163100857 -19314385 + MIR SINE MIR 31 97 -111 267 364 36 29 chr6 163100899 163101039 -19314203 + MIR SINE MIR 6 146 -62 22 35 0 0 chr6 163101075 163101104 -19314138 + AT_rich Low_complexity Low_complexity 1 29 0 339 239 119 30 chr6 163101631 163101765 -19313477 - L2 LINE L2 0 3313 3168 27 0 0 0 chr6 163102744 163102771 -19312471 + AT_rich Low_complexity Low_complexity 1 27 0 274 211 14 14 chr6 163104874 163104945 -19310297 + CT-rich Low_complexity Low_complexity 1 71 0 31 0 0 0 chr6 163105135 163105166 -19310076 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 163105400 163105421 -19309821 + GC_rich Low_complexity Low_complexity 1 21 0 2144 110 4 0 chr6 163106866 163107167 -19308075 - AluSp SINE Alu 0 302 1 764 322 71 49 chr6 163107470 163107699 -19307543 - L2 LINE L2 -1 3312 3089 2123 103 17 7 chr6 163107699 163107834 -19307408 + AluSx SINE Alu 1 133 -179 2147 107 7 3 chr6 163107834 163108124 -19307118 + AluSc SINE Alu 1 291 -18 2123 103 17 7 chr6 163108124 163108278 -19306964 + AluSx SINE Alu 133 293 -19 764 322 71 49 chr6 163108278 163108839 -19306403 - L2 LINE L2 -224 3089 2512 2225 145 16 19 chr6 163108855 163109221 -19306021 + MLT1A1 LTR MaLR 1 365 0 733 270 40 28 chr6 163109243 163109495 -19305747 + MIR SINE MIR 8 262 0 2386 102 0 6 chr6 163109938 163110252 -19304990 - AluSq SINE Alu -1 312 1 1859 169 10 16 chr6 163111834 163112147 -19303095 + AluSx SINE Alu 1 311 -1 582 309 10 25 chr6 163112364 163112565 -19302677 + L2 LINE L2 760 957 -2357 1895 160 3 10 chr6 163112614 163112914 -19302328 - AluJb SINE Alu -13 299 2 237 257 36 121 chr6 163112969 163113109 -19302133 - MER91B DNA MER1_type -60 130 3 4244 274 87 13 chr6 163113117 163114593 -19300649 + L2 LINE L2 955 2540 -774 802 224 14 49 chr6 163114593 163114816 -19300426 + L1MC4 LINE L1 7805 8019 -23 1132 296 45 38 chr6 163114851 163114907 -19300335 + L2 LINE L2 2595 2649 -664 2243 116 0 3 chr6 163114907 163115217 -19300025 - AluSg1 SINE Alu 0 309 1 1132 296 45 38 chr6 163115217 163115876 -19299366 + L2 LINE L2 2649 3313 0 274 313 91 39 chr6 163116764 163117161 -19298081 - MLT1K LTR MaLR 0 615 170 443 326 101 19 chr6 163117336 163117713 -19297529 - LTR33 LTR ERVL -69 452 45 432 0 0 0 chr6 163117936 163117984 -19297258 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 228 368 52 7 chr6 163118145 163118300 -19296942 + L3b LINE CR1 1256 1417 -166 1430 291 80 39 chr6 163118681 163119508 -19295734 - L2 LINE L2 0 3313 2459 1761 167 41 39 chr6 163120562 163120951 -19294291 - MLT1B LTR MaLR 0 390 1 3259 87 0 0 chr6 163121834 163122304 -19292938 + L1PA10 LINE L1 4796 5265 -881 1033 123 0 0 chr6 163122404 163122542 -19292700 - AluJb SINE Alu -174 138 1 1969 100 68 4 chr6 163122620 163122899 -19292343 - AluSq SINE Alu -14 299 3 3258 132 41 2 chr6 163122902 163123463 -19291779 - Tigger1 DNA MER2_type -9 2409 1827 2321 64 0 7 chr6 163123464 163123775 -19291467 - AluY SINE Alu 0 310 2 2382 94 0 0 chr6 163123796 163124105 -19291137 - AluY SINE Alu -2 309 1 4943 94 13 1 chr6 163124266 163125015 -19290227 + L1PA10 LINE L1 5396 6168 0 7025 53 8 11 chr6 163125318 163126574 -19288668 + L1PA8 LINE L1 4802 6056 -116 2300 100 3 0 chr6 163126574 163126873 -19288369 + AluSg SINE Alu 1 300 -10 7025 53 8 11 chr6 163126873 163126990 -19288252 + L1PA8 LINE L1 6056 6172 0 4896 172 24 13 chr6 163127088 163128072 -19287170 + L1MA7 LINE L1 5292 6286 -5 263 314 38 0 chr6 163128090 163128195 -19287047 - HERVL LTR ERVL -1090 4564 4456 2037 167 28 3 chr6 163128197 163128551 -19286691 - MLT1A1 LTR MaLR 0 365 3 775 307 25 0 chr6 163128723 163128997 -19286245 - HERVL LTR ERVL -1482 4282 4002 300 188 0 0 chr6 163129035 163129104 -19286138 + (TA)n Simple_repeat Simple_repeat 1 69 0 610 294 77 27 chr6 163129120 163129658 -19285584 - HERVL LTR ERVL -1716 3938 3398 1767 206 58 25 chr6 163129661 163130108 -19285134 - MLT1C LTR MaLR 0 467 6 1886 146 3 7 chr6 163130189 163130484 -19284758 + AluSx SINE Alu 1 294 -18 797 315 60 18 chr6 163130493 163130893 -19284349 - HERVL LTR ERVL -2377 3277 2861 210 71 0 0 chr6 163131696 163131724 -19283518 + (CA)n Simple_repeat Simple_repeat 1 28 0 365 274 109 43 chr6 163131933 163132326 -19282916 - L1MC5 LINE L1 -30 7996 7603 229 108 0 0 chr6 163132413 163132450 -19282792 - MLT2C1 LTR ERVL -1 396 360 591 186 168 6 chr6 163132522 163132689 -19282553 + MER33 DNA MER1_type 6 199 -125 246 247 0 11 chr6 163132770 163132863 -19282379 - L1MEc LINE L1 -4122 2274 2183 23 33 0 0 chr6 163133186 163133216 -19282026 + AT_rich Low_complexity Low_complexity 1 30 0 727 287 141 6 chr6 163133226 163133560 -19281682 + MLT1J2 LTR MaLR 2 380 -70 1231 185 143 36 chr6 163133631 163133960 -19281282 + THE1B LTR MaLR 1 364 0 523 211 43 82 chr6 163134019 163134227 -19281015 + MLT1D LTR MaLR 48 247 -258 954 315 93 29 chr6 163134698 163135541 -19279701 + ERVL LTR ERVL 1359 2307 -3457 1293 214 57 11 chr6 163135616 163135871 -19279371 + LTR50 LTR ERVL 429 671 -124 1498 224 70 23 chr6 163135871 163136268 -19278974 + LTR52 LTR ERVL 4 419 -2 1293 214 57 11 chr6 163136268 163136283 -19278959 + LTR50 LTR ERVL 671 684 -111 2522 55 0 16 chr6 163136283 163136592 -19278650 - AluY SINE Alu -5 306 3 1293 214 57 11 chr6 163136592 163136671 -19278571 + LTR50 LTR ERVL 684 795 0 507 349 43 33 chr6 163136680 163137127 -19278115 - L1MEc LINE L1 -3597 2618 2206 1541 224 21 2 chr6 163137152 163137581 -19277661 - L1 LINE L1 -3012 4553 4117 970 267 102 32 chr6 163137584 163138279 -19276963 - L1 LINE L1 -3857 3708 2964 189 0 0 0 chr6 163138307 163138328 -19276914 + (T)n Simple_repeat Simple_repeat 1 21 0 2403 210 34 28 chr6 163138345 163138951 -19276291 - L1 LINE L1 -4459 3107 2511 1912 170 0 3 chr6 163138951 163139251 -19275991 + AluJb SINE Alu 1 299 -13 2403 210 34 28 chr6 163139251 163139496 -19275746 - L1 LINE L1 -5055 2511 2269 517 341 36 51 chr6 163139679 163140090 -19275152 - L1 LINE L1 -6759 807 403 24 32 0 0 chr6 163140254 163140285 -19274957 + AT_rich Low_complexity Low_complexity 1 31 0 210 376 30 0 chr6 163142054 163142155 -19273087 + L2 LINE L2 3199 3302 -11 488 346 75 9 chr6 163143318 163143546 -19271696 - MIR SINE MIR 0 262 20 635 216 62 72 chr6 163143684 163143892 -19271350 + MER3 DNA MER1_type 1 206 -3 242 122 265 0 chr6 163144372 163144421 -19270821 - Tigger5 DNA MER2_type 0 2323 2262 2480 49 0 10 chr6 163144422 163144729 -19270513 + AluY SINE Alu 1 304 -7 255 358 28 9 chr6 163146078 163146187 -19269055 - MIR SINE MIR -44 218 108 4630 61 2 0 chr6 163146393 163146979 -19268263 - L1PA7 LINE L1 -4 6150 5564 8379 83 30 0 chr6 163146979 163148431 -19266811 + L1M1 LINE L1 4121 5612 -599 232 217 14 14 chr6 163149378 163149447 -19265795 + GA-rich Low_complexity Low_complexity 4 72 0 3366 179 10 38 chr6 163149798 163150501 -19264741 - L1MD2 LINE L1 0 6359 5677 1708 264 21 36 chr6 163150501 163151224 -19264018 - L1MD2 LINE L1 -901 5245 4534 535 348 109 42 chr6 163151226 163151885 -19263357 + L2 LINE L2 1988 2690 -624 189 0 0 0 chr6 163151885 163151906 -19263336 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 242 193 36 12 chr6 163151999 163152082 -19263160 + L1MEd LINE L1 162 246 -5959 1868 152 0 0 chr6 163152237 163152513 -19262729 + AluSx SINE Alu 1 276 -36 798 144 15 24 chr6 163152533 163152949 -19262293 + GA-rich Low_complexity Low_complexity 1 412 0 841 249 68 56 chr6 163152984 163153398 -19261844 + L1MEd LINE L1 390 808 -5397 4223 65 9 0 chr6 163153863 163154416 -19260826 + LTR6B LTR ERV1 1 558 0 2893 68 18 22 chr6 163154704 163155148 -19260094 + LTR7 LTR ERV1 1 442 -8 23 116 0 0 chr6 163155358 163155479 -19259763 + AT_rich Low_complexity Low_complexity 1 121 0 1680 168 3 18 chr6 163155760 163156046 -19259196 + AluJo SINE Alu 1 282 -30 2452 70 0 0 chr6 163156048 163156348 -19258894 - AluY SINE Alu -11 300 1 22 70 0 0 chr6 163156777 163156820 -19258422 + AT_rich Low_complexity Low_complexity 1 43 0 611 162 14 104 chr6 163157119 163157207 -19258035 + MSTC LTR MaLR 1 80 -285 2357 47 40 13 chr6 163157207 163157506 -19257736 + AluY SINE Alu 3 309 -2 611 162 14 104 chr6 163157506 163157598 -19257644 + MSTC LTR MaLR 80 179 -186 665 160 39 39 chr6 163157845 163158001 -19257241 - LTR1B LTR ERV1 -328 498 343 326 227 130 19 chr6 163158036 163158177 -19257065 - LTR1 LTR ERV1 -564 221 58 557 220 28 14 chr6 163158213 163158354 -19256888 + MSTC LTR MaLR 243 385 -11 1656 48 4 0 chr6 163158522 163158749 -19256493 + L1P LINE L1 1 228 -5918 * 22724 18 0 0 chr6 163158748 163162318 -19252924 + L1HS LINE L1 2584 6153 -2 296 313 108 3 chr6 163162313 163162601 -19252641 + L1MEd LINE L1 1627 1944 -4452 * 651 235 8 0 chr6 163162661 163162780 -19252462 - FLAM_A SINE Alu -13 120 1 3303 197 41 11 chr6 163162839 163164299 -19250943 + L1MA9 LINE L1 4281 5789 -523 249 33 0 0 chr6 163164301 163164331 -19250911 + (CA)n Simple_repeat Simple_repeat 1 30 0 1034 168 5 15 chr6 163164363 163164566 -19250676 - Tigger5 DNA MER2_type 0 2323 2123 35 0 0 0 chr6 163165447 163165482 -19249760 + AT_rich Low_complexity Low_complexity 1 35 0 640 193 0 9 chr6 163165482 163165596 -19249646 - Tigger5 DNA MER2_type -2210 113 1 716 104 56 24 chr6 163165596 163165721 -19249521 + L1MA9 LINE L1 5782 5910 -279 2170 151 11 0 chr6 163165732 163166084 -19249158 + MER47A DNA MER2_type 11 366 0 1783 192 54 5 chr6 163166084 163166470 -19248772 + L1MA9 LINE L1 5905 6309 -3 1013 125 40 0 chr6 163166522 163166698 -19248544 + L1MA5 LINE L1 6096 6278 -22 663 209 193 60 chr6 163166721 163166877 -19248365 + L1M4 LINE L1 4693 4827 -1319 1707 171 3 17 chr6 163166877 163167238 -19248004 + AluJb SINE Alu 1 357 0 663 209 193 60 chr6 163167238 163167381 -19247861 + L1M4 LINE L1 4827 5033 -1113 311 281 72 7 chr6 163167396 163167535 -19247707 + L1ME2 LINE L1 6001 6148 -16 4602 61 2 0 chr6 163168055 163168641 -19246601 - L1PA7 LINE L1 -4 6150 5564 8549 69 50 1 chr6 163168641 163170376 -19244866 + L1HS LINE L1 4121 5909 -246 243 200 0 0 chr6 163170594 163170639 -19244603 + MSTB1 LTR MaLR 382 426 -6 588 280 114 34 chr6 163170972 163171208 -19244034 - MIR SINE MIR -5 257 3 22 0 0 0 chr6 163171324 163171346 -19243896 + AT_rich Low_complexity Low_complexity 1 22 0 780 262 52 76 chr6 163171848 163171893 -19243349 - MLT1J LTR MaLR -30 481 436 2352 80 3 0 chr6 163171893 163172193 -19243049 - AluSc SINE Alu -8 301 1 780 262 52 76 chr6 163172193 163172555 -19242687 - MLT1J LTR MaLR -75 436 84 316 341 12 6 chr6 163172883 163173053 -19242189 - L1MC4a LINE L1 -1927 5881 5711 3532 117 56 5 chr6 163173277 163173848 -19241394 - LTR43 LTR ERV1 -2 600 1 1859 215 75 66 chr6 163174060 163174591 -19240651 - MLT1E2 LTR MaLR -89 537 2 2057 123 3 0 chr6 163174681 163174974 -19240268 - AluSg SINE Alu -16 294 1 5722 165 24 23 chr6 163175103 163175471 -19239771 - L1MA9 LINE L1 0 6312 5946 2152 127 0 0 chr6 163175471 163175771 -19239471 - AluSx SINE Alu -12 300 1 5722 165 24 23 chr6 163175771 163177430 -19237812 - L1MA9 LINE L1 -366 5946 4283 3187 184 46 7 chr6 163177433 163178128 -19237114 + L1MA9 LINE L1 3553 4274 -1872 605 255 13 32 chr6 163178890 163179047 -19236195 - L2 LINE L2 -1 3312 3159 1632 192 44 9 chr6 163179062 163179406 -19235836 + MLT1A1 LTR MaLR 10 365 0 372 313 47 0 chr6 163179431 163179581 -19235661 - L2 LINE L2 -191 3122 2966 24 53 0 0 chr6 163180507 163180545 -19234697 + AT_rich Low_complexity Low_complexity 1 38 0 2088 92 0 11 chr6 163181242 163181553 -19233689 + AluSx SINE Alu 1 308 0 336 24 0 0 chr6 163181725 163181766 -19233476 + (CA)n Simple_repeat Simple_repeat 2 42 0 209 204 0 0 chr6 163182313 163182362 -19232880 + (TA)n Simple_repeat Simple_repeat 1 49 0 24 67 0 0 chr6 163186423 163186468 -19228774 + AT_rich Low_complexity Low_complexity 1 45 0 382 341 24 8 chr6 163186907 163187030 -19228212 - MER5A DNA MER1_type -14 175 51 673 299 68 13 chr6 163187039 163187424 -19227818 - L1M4 LINE L1 -2412 3734 3329 336 276 143 41 chr6 163187426 163187622 -19227620 - L1MC4 LINE L1 -1 8041 7826 311 281 72 7 chr6 163187689 163187828 -19227414 - L1ME2 LINE L1 -16 6148 6001 663 209 193 60 chr6 163187843 163187986 -19227256 - L1M4 LINE L1 -1113 5033 4910 1706 171 3 17 chr6 163187986 163188327 -19226915 - AluJb SINE Alu 0 337 1 663 209 193 60 chr6 163188327 163188483 -19226759 - L1M4 LINE L1 -1236 4910 4693 1013 125 40 0 chr6 163188506 163188682 -19226560 - L1MA5 LINE L1 -22 6278 6096 1783 192 54 5 chr6 163188734 163189120 -19226122 - L1MA9 LINE L1 -3 6309 5905 2170 151 11 0 chr6 163189120 163189472 -19225770 - MER47A DNA MER2_type 0 366 11 716 104 56 24 chr6 163189483 163189608 -19225634 - L1MA9 LINE L1 -279 5910 5782 640 193 0 9 chr6 163189608 163189722 -19225520 + Tigger5 DNA MER2_type 1 113 -2210 35 0 0 0 chr6 163189722 163189757 -19225485 + AT_rich Low_complexity Low_complexity 1 35 0 1085 172 5 15 chr6 163190638 163190841 -19224401 + Tigger5 DNA MER2_type 2123 2323 0 231 36 0 0 chr6 163190873 163190901 -19224341 + (TG)n Simple_repeat Simple_repeat 1 28 0 3706 196 42 11 chr6 163190903 163192363 -19222879 - L1MA9 LINE L1 -500 5791 4281 636 235 8 0 chr6 163192422 163192541 -19222701 + FLAM_A SINE Alu 1 120 -13 2812 262 76 39 chr6 163192586 163194271 -19220971 - L1ME LINE L1 -4297 1783 31 213 234 0 0 chr6 163194351 163194415 -19220827 + CT-rich Low_complexity Low_complexity 1 64 0 504 240 44 61 chr6 163194415 163194777 -19220465 - L1MCb LINE L1 -2881 3683 3328 356 293 54 26 chr6 163194782 163195003 -19220239 - L1MCb LINE L1 -4959 1086 942 1062 290 77 44 chr6 163195814 163196427 -19218815 - L2 LINE L2 -188 3125 2491 2278 99 48 20 chr6 163197609 163197963 -19217279 + THE1B LTR MaLR 1 364 0 753 117 78 16 chr6 163198623 163198751 -19216491 - AluJo SINE Alu -176 136 1 189 333 43 21 chr6 163199262 163199355 -19215887 + MIR3 SINE MIR 114 208 0 449 281 71 31 chr6 163199590 163199814 -19215428 + MIR SINE MIR 30 262 0 277 361 49 21 chr6 163199993 163200137 -19215105 - MIR3 SINE MIR -10 198 51 1512 259 34 34 chr6 163200139 163200614 -19214628 - MLT1H LTR MaLR -2 547 73 28 0 0 0 chr6 163202754 163202782 -19212460 + AT_rich Low_complexity Low_complexity 1 28 0 1624 178 0 14 chr6 163202941 163203222 -19212020 - AluJb SINE Alu -10 302 26 22 0 0 0 chr6 163205153 163205175 -19210067 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 163205321 163205344 -19209898 + AT_rich Low_complexity Low_complexity 1 23 0 780 170 0 21 chr6 163205650 163205791 -19209451 - AluSq/x SINE Alu -174 138 1 288 336 18 18 chr6 163205828 163205938 -19209304 + L1ME LINE L1 5491 5600 -521 2306 92 3 3 chr6 163206320 163206624 -19208618 + AluSp SINE Alu 1 304 -9 1989 76 80 4 chr6 163207157 163207432 -19207810 + AluSg SINE Alu 1 296 -14 2194 118 0 0 chr6 163208087 163208391 -19206851 + AluSx SINE Alu 1 304 -8 1692 154 0 33 chr6 163208819 163209118 -19206124 + AluJo SINE Alu 1 289 -23 3551 129 37 3 chr6 163210252 163210825 -19204417 + LTR38B LTR ERV1 1 592 -18 21 36 0 0 chr6 163210942 163210970 -19204272 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr6 163211497 163211523 -19203719 + AT_rich Low_complexity Low_complexity 1 26 0 2359 68 0 0 chr6 163211576 163211884 -19203358 - L1PA5 LINE L1 0 6154 5847 1286 167 0 5 chr6 163211954 163212170 -19203072 - AluJb SINE Alu -12 300 86 255 200 65 125 chr6 163212907 163213107 -19202135 + MLT1D LTR MaLR 167 354 -151 1845 238 34 111 chr6 163213107 163213298 -19201944 - L1M4 LINE L1 -5843 699 495 1860 174 3 0 chr6 163213298 163213609 -19201633 - AluJb SINE Alu 0 312 1 1845 238 34 111 chr6 163213609 163214158 -19201084 - L1M4 LINE L1 -6047 495 16 249 184 0 0 chr6 163216006 163216044 -19199198 - 5S rRNA rRNA -82 39 2 204 231 0 19 chr6 163216106 163216158 -19199084 + CT-rich Low_complexity Low_complexity 3 53 0 21 36 0 0 chr6 163217433 163217461 -19197781 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr6 163217550 163217603 -19197639 + AT_rich Low_complexity Low_complexity 1 53 0 404 289 9 18 chr6 163217634 163217748 -19197494 - MIR SINE MIR -147 115 3 249 324 35 21 chr6 163218134 163218276 -19196966 + L1ME LINE L1 5595 5738 -383 23 0 0 0 chr6 163218334 163218357 -19196885 + AT_rich Low_complexity Low_complexity 1 23 0 515 283 56 40 chr6 163218717 163218915 -19196327 + MIR SINE MIR 44 244 -18 23 0 0 0 chr6 163219306 163219329 -19195913 + AT_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr6 163219432 163219491 -19195751 + AT_rich Low_complexity Low_complexity 1 59 0 265 258 31 61 chr6 163219510 163219673 -19195569 - L1ME LINE L1 -393 5728 5571 2162 91 3 14 chr6 163220235 163220556 -19194686 - AluSp SINE Alu 0 318 1 25 65 0 0 chr6 163220949 163220995 -19194247 + AT_rich Low_complexity Low_complexity 1 46 0 189 318 0 0 chr6 163221678 163221722 -19193520 - L2 LINE L2 -51 3221 3178 216 188 0 42 chr6 163222250 163222298 -19192944 - L2 LINE L2 0 3313 3268 291 363 87 38 chr6 163222411 163222889 -19192353 - L2 LINE L2 -183 3089 2582 201 39 0 0 chr6 163223254 163223280 -19191962 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1860 145 0 35 chr6 163223282 163223572 -19191670 - AluSx SINE Alu -32 280 1 659 277 87 29 chr6 163224785 163225027 -19190215 - LTR33 LTR ERVL -229 292 37 682 234 6 13 chr6 163225524 163225682 -19189560 + FRAM SINE Alu 1 157 -9 250 212 15 0 chr6 163226461 163226527 -19188715 - Tigger7 DNA MER2_type -33 2454 2388 1436 191 4 0 chr6 163226544 163226785 -19188457 - Tigger7 DNA MER2_type -490 243 2 270 176 69 6 chr6 163227433 163227592 -19187650 + (TA)n Simple_repeat Simple_repeat 2 170 0 1122 210 37 63 chr6 163227681 163227879 -19187363 - MER58B DNA MER1_type -2081 339 150 1196 134 194 32 chr6 163227879 163228132 -19187110 + AluSg SINE Alu 1 294 -6 1122 210 37 63 chr6 163228132 163228233 -19187009 - MER58B DNA MER1_type -2270 150 48 341 351 48 0 chr6 163228729 163228866 -19186376 + MIR SINE MIR 13 154 -54 29 60 0 0 chr6 163229335 163229385 -19185857 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr6 163235589 163235612 -19179630 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr6 163236012 163236045 -19179197 + AT_rich Low_complexity Low_complexity 1 33 0 628 253 11 45 chr6 163236581 163236759 -19178483 + MER5B DNA MER1_type 1 172 -6 752 255 37 11 chr6 163238183 163238371 -19176871 - MER58A DNA MER1_type 0 224 32 981 269 76 62 chr6 163240074 163240509 -19174733 - MLT1J LTR MaLR -42 469 29 21 0 0 0 chr6 163240781 163240802 -19174440 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 163240917 163240940 -19174302 + AT_rich Low_complexity Low_complexity 1 23 0 185 289 0 0 chr6 163240975 163241020 -19174222 - L2 LINE L2 -4 3268 3224 1826 245 86 112 chr6 163241027 163241492 -19173750 - L2 LINE L2 -340 2974 2498 543 143 0 0 chr6 163241492 163241576 -19173666 + AluJ/FLAM SINE Alu 1 84 -228 1826 245 86 112 chr6 163241576 163241893 -19173349 - L2 LINE L2 -816 2498 2138 1799 206 91 2 chr6 163241893 163242320 -19172922 - MLT1C LTR MaLR 0 467 3 1826 245 86 112 chr6 163242320 163242495 -19172747 - L2 LINE L2 -1176 2138 1960 599 224 0 119 chr6 163242509 163242719 -19172523 - L2 LINE L2 0 3313 3129 2079 94 19 23 chr6 163242719 163243027 -19172215 - THE1B LTR MaLR -57 307 1 919 275 132 3 chr6 163243053 163243424 -19171818 - L2 LINE L2 -1623 1691 1273 330 67 0 0 chr6 163243564 163243609 -19171633 + (CA)n Simple_repeat Simple_repeat 2 46 0 636 226 158 42 chr6 163244510 163244651 -19170591 - MER99 DNA DNA -18 810 640 2111 139 67 21 chr6 163244651 163245024 -19170218 - MLT1B LTR MaLR 0 390 1 636 226 158 42 chr6 163245024 163245072 -19170170 - MER99 DNA DNA -188 640 599 26 30 0 0 chr6 163245269 163245302 -19169940 + AT_rich Low_complexity Low_complexity 1 33 0 544 188 0 0 chr6 163245324 163245420 -19169822 - MER99 DNA DNA -731 97 2 501 133 0 42 chr6 163245779 163245899 -19169343 + (TCCCC)n Simple_repeat Simple_repeat 5 119 0 2094 169 34 35 chr6 163246098 163246651 -19168591 - MLT2A2 LTR ERVL 0 554 1 332 299 104 30 chr6 163246700 163246864 -19168378 + HAL1 LINE L1 1116 1291 -1216 216 158 0 0 chr6 163247265 163247303 -19167939 + (CA)n Simple_repeat Simple_repeat 2 39 0 1151 113 14 52 chr6 163248330 163248542 -19166700 + L1PB2 LINE L1 5941 6144 -7 236 196 0 0 chr6 163248545 163248596 -19166646 + A-rich Low_complexity Low_complexity 1 51 0 2428 81 3 0 chr6 163248624 163248934 -19166308 + AluY SINE Alu 1 311 0 24 53 0 0 chr6 163249094 163249132 -19166110 + AT_rich Low_complexity Low_complexity 1 38 0 1225 269 46 28 chr6 163252215 163252496 -19162746 - L1M4 LINE L1 -957 5189 4914 2206 93 0 45 chr6 163252496 163252807 -19162435 + AluSx SINE Alu 1 297 -15 1225 269 46 28 chr6 163252807 163253090 -19162152 - L1M4 LINE L1 -1232 4914 4615 2198 112 0 3 chr6 163254018 163254323 -19160919 + AluY SINE Alu 1 304 -7 2314 90 3 0 chr6 163254405 163254704 -19160538 + AluSx SINE Alu 1 300 -12 385 348 98 4 chr6 163254784 163255020 -19160222 - MIR SINE MIR 0 262 5 369 294 150 40 chr6 163255024 163255350 -19159892 - L2 LINE L2 -859 2455 2094 1131 223 72 0 chr6 163255368 163255633 -19159609 - L1ME3A LINE L1 -43 6127 5844 1358 233 256 19 chr6 163255701 163256067 -19159175 + MLT1E LTR MaLR 68 550 -43 3399 75 4 2 chr6 163256067 163256523 -19158719 + L1PA10 LINE L1 5709 6165 -3 1358 233 256 19 chr6 163256523 163256581 -19158661 + MLT1E LTR MaLR 550 593 0 24 53 0 0 chr6 163256597 163256635 -19158607 + AT_rich Low_complexity Low_complexity 1 38 0 204 40 0 0 chr6 163256684 163256709 -19158533 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 243 0 0 0 chr6 163256708 163256735 -19158507 + (TA)n Simple_repeat Simple_repeat 2 28 0 308 270 131 38 chr6 163256754 163256991 -19158251 - LTR41 LTR ERVL -6 767 509 361 207 221 21 chr6 163257327 163257472 -19157770 - LTR41 LTR ERVL -599 174 1 26 0 0 0 chr6 163257534 163257560 -19157682 + AT_rich Low_complexity Low_complexity 1 26 0 2242 92 7 0 chr6 163257560 163257852 -19157390 + AluSc SINE Alu 1 294 -15 633 270 80 65 chr6 163257890 163258243 -19156999 + L1M4 LINE L1 3129 3475 -2671 1446 219 44 19 chr6 163258243 163258608 -19156634 + MLT1A2 LTR MaLR 1 374 0 633 270 80 65 chr6 163258608 163258650 -19156592 + L1M4 LINE L1 3475 3515 -2631 2204 80 0 11 chr6 163258650 163258971 -19156271 - AluSq SINE Alu 0 318 1 633 270 80 65 chr6 163258971 163259185 -19156057 + L1M4 LINE L1 3515 3749 -2397 472 222 16 0 chr6 163259196 163259322 -19155920 - L1MA7 LINE L1 0 6291 6164 * 2653 170 148 25 chr6 163259320 163259589 -19155653 - L1MA6 LINE L1 -235 6065 5831 2232 111 22 38 chr6 163259589 163259959 -19155283 + THE1B LTR MaLR 1 364 0 2653 170 148 25 chr6 163259959 163260295 -19154947 - L1MA6 LINE L1 -469 5831 5385 1286 276 121 29 chr6 163260298 163260477 -19154765 - L1M3b LINE L1 -5493 648 487 1692 190 17 0 chr6 163260477 163260777 -19154465 + AluJo SINE Alu 1 305 -7 1286 276 121 29 chr6 163260777 163261078 -19154164 - L1M3b LINE L1 -5654 487 124 310 250 33 33 chr6 163261200 163261292 -19153950 - L1M3b LINE L1 -6036 105 14 486 310 128 8 chr6 163261301 163261685 -19153557 + L1M4 LINE L1 3733 4162 -1984 372 230 0 0 chr6 163261692 163261766 -19153476 + L1ME LINE L1 5667 5740 -430 1987 117 0 0 chr6 163263069 163263335 -19151907 - AluSg SINE Alu 0 310 45 246 184 0 0 chr6 163263335 163263373 -19151869 + Alu SINE Alu 8 45 -257 318 265 48 0 chr6 163263388 163263471 -19151771 + L2 LINE L2 3225 3311 -2 910 154 35 38 chr6 163263764 163264040 -19151202 + L1MB2 LINE L1 5794 6119 -52 215 308 0 0 chr6 163264777 163264829 -19150413 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 2537 120 3 8 chr6 163265907 163266273 -19148969 - THE1B LTR MaLR 0 364 1 2518 103 8 3 chr6 163266736 163267104 -19148138 - L1PB1 LINE L1 0 6151 5782 255 31 0 0 chr6 163267200 163267232 -19148010 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1831 155 0 11 chr6 163267232 163267516 -19147726 - AluSq SINE Alu -32 281 1 3611 185 36 2 chr6 163267582 163268157 -19147085 - L1PB1 LINE L1 -356 5795 5241 207 0 0 0 chr6 163268157 163268180 -19147062 + (TTA)n Simple_repeat Simple_repeat 3 25 0 3611 185 36 2 chr6 163268180 163268854 -19146388 - L1PB1 LINE L1 -910 5241 4502 728 251 40 66 chr6 163269595 163269732 -19145510 + LTR16A1 LTR ERVL 1 140 -317 2019 131 0 29 chr6 163269732 163270046 -19145196 - AluSx SINE Alu -3 309 5 728 251 40 66 chr6 163270046 163270287 -19144955 + LTR16A1 LTR ERVL 140 369 -88 710 303 76 44 chr6 163270349 163270824 -19144418 + HERV16 LTR ERVL 335 824 -4172 216 209 30 30 chr6 163271266 163271333 -19143909 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 1323 173 32 0 chr6 163271333 163271581 -19143661 - L1MD3 LINE L1 -10 7985 7730 191 130 0 22 chr6 163273145 163273191 -19142051 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 242 231 29 19 chr6 163274522 163274626 -19140616 + (TA)n Simple_repeat Simple_repeat 2 106 0 1270 196 119 39 chr6 163276601 163276938 -19138304 - THE1B LTR MaLR 0 364 1 2157 100 6 12 chr6 163278318 163278639 -19136603 + L1MA2 LINE L1 5980 6298 -6 330 337 87 23 chr6 163278998 163279170 -19136072 - MIR3 SINE MIR -17 191 9 215 293 40 27 chr6 163279590 163279665 -19135577 - L3 LINE CR1 -2 1575 1500 426 268 18 18 chr6 163279805 163279917 -19135325 + MIR SINE MIR 36 147 -115 232 87 43 0 chr6 163280519 163280565 -19134677 - L1MC4 LINE L1 -1340 6702 6655 226 194 0 0 chr6 163281104 163281140 -19134102 + L1MC/D LINE L1 5619 5654 -2154 22 56 0 0 chr6 163281313 163281349 -19133893 + AT_rich Low_complexity Low_complexity 1 36 0 535 249 111 76 chr6 163281479 163281704 -19133538 - MIR SINE MIR -27 235 3 22 70 0 0 chr6 163281953 163281996 -19133246 + AT_rich Low_complexity Low_complexity 1 43 0 5315 160 35 29 chr6 163282321 163284335 -19130907 - L1PA16 LINE L1 -26 6140 4121 2116 103 50 36 chr6 163284583 163284942 -19130300 + THE1B LTR MaLR 1 364 0 275 330 0 0 chr6 163285792 163285880 -19129362 - L1P LINE L1 -4328 1818 1731 21 0 0 0 chr6 163286177 163286198 -19129044 + AT_rich Low_complexity Low_complexity 1 21 0 290 302 165 33 chr6 163286596 163286778 -19128464 + MIR SINE MIR 51 256 -6 24 32 0 0 chr6 163286885 163286916 -19128326 + AT_rich Low_complexity Low_complexity 1 31 0 317 347 233 18 chr6 163287387 163287713 -19127529 + L1MC/D LINE L1 5411 5806 -2002 22 0 0 0 chr6 163288030 163288052 -19127190 + AT_rich Low_complexity Low_complexity 1 22 0 2368 40 43 13 chr6 163288569 163288870 -19126372 - AluY SINE Alu 0 311 2 401 343 153 21 chr6 163289045 163289482 -19125760 + HAL1b LINE L1 67 561 -787 25 31 0 0 chr6 163289770 163289802 -19125440 + AT_rich Low_complexity Low_complexity 1 32 0 5346 167 50 4 chr6 163291018 163291991 -19123251 - L1MD3 LINE L1 -10 7985 5308 755 156 24 18 chr6 163292029 163292369 -19122873 + CT-rich Low_complexity Low_complexity 1 342 0 1295 213 78 0 chr6 163292371 163292629 -19122613 - AluJb SINE Alu -32 280 3 1301 256 14 0 chr6 163292629 163292984 -19122258 - L1MD3 LINE L1 -839 5307 4948 * 1935 253 12 19 chr6 163292982 163293566 -19121676 - L1MD3 LINE L1 -2255 3891 3312 185 282 70 14 chr6 163294683 163294754 -19120488 - MIR SINE MIR -120 142 68 * 374 297 22 60 chr6 163294722 163294907 -19120335 - L2 LINE L2 -4 3309 3132 2328 68 0 26 chr6 163296924 163297233 -19118009 - AluY SINE Alu -9 302 2 4824 60 0 28 chr6 163298138 163298789 -19116453 + L1PA7 LINE L1 5514 6146 -8 22 35 0 0 chr6 163299262 163299291 -19115951 + AT_rich Low_complexity Low_complexity 1 29 0 451 301 120 0 chr6 163299512 163299695 -19115547 + MIR SINE MIR 2 206 -56 232 94 113 0 chr6 163299721 163299774 -19115468 + L1MA7 LINE L1 6233 6291 0 198 320 13 13 chr6 163300303 163300378 -19114864 + MIR3 SINE MIR 125 199 -9 414 340 10 34 chr6 163300933 163301139 -19114103 - MIR SINE MIR -1 261 61 22 0 0 0 chr6 163301343 163301365 -19113877 + AT_rich Low_complexity Low_complexity 1 22 0 860 203 0 6 chr6 163302185 163302362 -19112880 + MER96B DNA MER1_type? 1 176 -241 26 30 0 0 chr6 163303447 163303480 -19111762 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr6 163303608 163303649 -19111593 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr6 163303744 163303772 -19111470 + AT_rich Low_complexity Low_complexity 1 28 0 1192 292 109 20 chr6 163303953 163304781 -19110461 + L1M4 LINE L1 2115 3015 -3131 * 1299 139 26 41 chr6 163304780 163305046 -19110196 + L1MA9 LINE L1 6010 6271 -41 459 0 0 0 chr6 163305046 163305097 -19110145 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 258 128 0 0 chr6 163305131 163305170 -19110072 + AluSq/x SINE Alu 69 107 -196 21 0 0 0 chr6 163305222 163305243 -19109999 + AT_rich Low_complexity Low_complexity 1 21 0 5330 138 46 3 chr6 163305271 163306127 -19109115 - Tigger1 DNA MER2_type -1519 899 8 400 231 91 16 chr6 163306178 163306299 -19108943 + MER58C DNA MER1_type 2 131 -84 393 114 89 13 chr6 163306299 163306378 -19108864 + L1MB1 LINE L1 6065 6149 -40 26 0 0 0 chr6 163306406 163306432 -19108810 + AT_rich Low_complexity Low_complexity 1 26 0 208 216 0 0 chr6 163306499 163306536 -19108706 + (CA)n Simple_repeat Simple_repeat 2 38 0 763 171 27 0 chr6 163306541 163306687 -19108555 + L1MA10 LINE L1 6175 6324 -10 824 226 58 0 chr6 163306687 163306913 -19108329 + MER69 DNA AcHobo 2287 2525 -1 22 35 0 0 chr6 163307220 163307249 -19107993 + AT_rich Low_complexity Low_complexity 1 29 0 1442 179 79 10 chr6 163307268 163307558 -19107684 - AluJb SINE Alu -2 310 1 291 200 58 75 chr6 163309367 163309404 -19105838 - L1MC4 LINE L1 -16 8026 7990 2018 109 0 0 chr6 163309404 163309680 -19105562 + AluSx SINE Alu 33 308 -4 291 200 58 75 chr6 163309680 163309762 -19105480 - L1MC4 LINE L1 -52 7990 7909 182 186 47 0 chr6 163309775 163309861 -19105381 + (TA)n Simple_repeat Simple_repeat 1 90 0 228 114 0 0 chr6 163309887 163309931 -19105311 + LTR66 LTR ERVL 394 437 -173 3680 218 98 15 chr6 163309931 163310973 -19104269 - L1MC4 LINE L1 -148 7894 6767 326 301 32 16 chr6 163311014 163311137 -19104105 - L1MC4 LINE L1 -1373 6669 6545 1293 251 104 10 chr6 163311164 163311559 -19103683 - LTR40c LTR ERVL -32 433 2 604 281 142 3 chr6 163311564 163311888 -19103354 - L1MC4a LINE L1 -1281 6527 6159 189 107 0 0 chr6 163311925 163311953 -19103289 + (A)n Simple_repeat Simple_repeat 1 28 0 1022 178 11 5 chr6 163311966 163312151 -19103091 + L1PA15 LINE L1 5971 6156 -9 23 0 0 0 chr6 163312151 163312174 -19103068 + AT_rich Low_complexity Low_complexity 1 23 0 388 284 95 24 chr6 163312599 163312768 -19102474 + L1MC5 LINE L1 7039 7219 -742 234 303 46 59 chr6 163312798 163312950 -19102292 + L1MC4a LINE L1 7244 7393 -415 * 898 256 146 31 chr6 163312923 163313411 -19101831 + L1MC5 LINE L1 7273 7816 -145 1828 154 7 7 chr6 163313860 163314159 -19101083 + AluJb SINE Alu 3 301 -11 24 32 0 0 chr6 163314198 163314229 -19101013 + AT_rich Low_complexity Low_complexity 1 31 0 216 67 0 0 chr6 163314257 163314287 -19100955 + (TG)n Simple_repeat Simple_repeat 1 30 0 5327 157 140 62 chr6 163314358 163315852 -19099390 + pTR5 LTR ERV1 743 2438 0 579 121 0 0 chr6 163315852 163315943 -19099299 - L1MA6 LINE L1 -22 6278 6188 1785 120 39 99 chr6 163315946 163316151 -19099091 - THE1C LTR MaLR 0 375 202 2294 93 3 3 chr6 163316151 163316453 -19098789 - AluSq SINE Alu -11 302 1 1785 120 39 99 chr6 163316453 163316629 -19098613 - THE1C LTR MaLR -173 202 17 36 62 0 0 chr6 163316632 163316696 -19098546 + AT_rich Low_complexity Low_complexity 1 64 0 7936 119 33 2 chr6 163318853 163320111 -19095131 - HSMAR2 DNA Mariner -1 1301 5 201 94 0 0 chr6 163320591 163320623 -19094619 + (TTTAG)n Simple_repeat Simple_repeat 3 34 0 2687 232 33 19 chr6 163320995 163321077 -19094165 + L1M4 LINE L1 990 1069 -5577 3187 120 6 42 chr6 163321077 163321602 -19093640 - MER84 LTR ERV1 0 507 2 2687 232 33 19 chr6 163321602 163322362 -19092880 + L1M4 LINE L1 1069 1864 -4782 3296 156 57 14 chr6 163322871 163323518 -19091724 + L1MB1 LINE L1 5494 6168 0 1598 189 7 7 chr6 163323894 163324180 -19091062 - AluJb SINE Alu -22 290 5 21 0 0 31 chr6 163324445 163324465 -19090777 + AT_rich Low_complexity Low_complexity 1 21 -10 5516 14 2 0 chr6 163324465 163325092 -19090150 - L1PA3 LINE L1 0 6155 5528 21 0 0 31 chr6 163325092 163325103 -19090139 + AT_rich Low_complexity Low_complexity 21 31 0 253 239 119 0 chr6 163325384 163325451 -19089791 - L2 LINE L2 0 3313 3239 257 282 167 0 chr6 163325478 163325556 -19089686 + MLT1A1 LTR MaLR 2 92 -273 192 322 77 28 chr6 163325728 163325871 -19089371 - L2 LINE L2 -1182 2132 1983 1322 153 31 0 chr6 163325873 163326101 -19089141 + L1MA7 LINE L1 5637 5871 -420 1240 144 42 34 chr6 163326093 163326126 -19089116 + L1MA7 LINE L1 5789 5820 -471 * 440 172 21 0 chr6 163326126 163326219 -19089023 + L1PA16 LINE L1 6071 6165 -1 1240 144 42 34 chr6 163326219 163326448 -19088794 + L1MA7 LINE L1 5820 6053 -238 511 227 23 0 chr6 163326449 163326577 -19088665 + L1MA7 LINE L1 6161 6291 0 290 277 119 13 chr6 163326720 163326879 -19088363 - L2 LINE L2 -1318 1996 1821 2250 141 47 0 chr6 163326972 163327313 -19087929 - LTR18A LTR ERVL 0 357 1 2053 123 0 0 chr6 163328103 163328379 -19086863 + AluSx SINE Alu 21 296 -16 198 0 0 0 chr6 163328394 163328416 -19086826 + (CA)n Simple_repeat Simple_repeat 2 23 0 502 291 104 11 chr6 163329640 163329822 -19085420 - MIR SINE MIR -16 246 48 21 57 0 0 chr6 163329862 163329897 -19085345 + AT_rich Low_complexity Low_complexity 1 35 0 1796 159 10 3 chr6 163330034 163330323 -19084919 - AluSx SINE Alu -13 299 9 784 273 41 11 chr6 163331490 163331757 -19083485 - HAL1 LINE L1 -2141 366 92 2241 107 3 0 chr6 163332028 163332328 -19082914 + AluSx SINE Alu 1 301 -11 266 180 16 0 chr6 163332916 163332977 -19082265 + CT-rich Low_complexity Low_complexity 4 65 0 227 286 163 0 chr6 163332996 163333094 -19082148 - L1ME LINE L1 -201 5920 5807 300 27 0 0 chr6 163333956 163333993 -19081249 + (TG)n Simple_repeat Simple_repeat 2 38 0 1919 156 3 3 chr6 163335057 163335359 -19079883 + AluSx SINE Alu 1 302 -10 207 175 0 25 chr6 163335668 163335708 -19079534 + G-rich Low_complexity Low_complexity 2 40 0 206 358 37 0 chr6 163335885 163335966 -19079276 - L2 LINE L2 0 3272 3189 2038 146 0 7 chr6 163336140 163336442 -19078800 - AluSx SINE Alu -12 300 1 389 306 88 9 chr6 163336453 163336669 -19078573 - L1ME4a LINE L1 -210 5911 5679 479 299 43 55 chr6 163336688 163336864 -19078378 + MLT1J LTR MaLR 9 181 -330 557 40 81 0 chr6 163336864 163336938 -19078304 + MADE1 DNA Mariner 1 80 0 479 299 43 55 chr6 163336938 163337086 -19078156 + MLT1J LTR MaLR 181 329 -182 22 56 0 0 chr6 163337250 163337286 -19077956 + AT_rich Low_complexity Low_complexity 1 36 0 2910 230 35 35 chr6 163337292 163338205 -19077037 + L1ME1 LINE L1 5281 6161 -5 465 313 60 34 chr6 163338565 163338798 -19076444 - MIR SINE MIR -12 250 12 230 318 0 0 chr6 163338837 163338900 -19076342 + L2 LINE L2 3247 3309 -4 222 229 21 0 chr6 163340695 163340743 -19074499 - L2 LINE L2 -19 3294 3246 5041 163 19 4 chr6 163340758 163342231 -19073011 + L1MA4A LINE L1 4700 6280 -23 47 44 0 0 chr6 163342752 163342820 -19072422 + AT_rich Low_complexity Low_complexity 1 68 0 190 413 40 0 chr6 163344841 163344916 -19070326 + L2 LINE L2 3109 3186 -86 8592 184 55 61 chr6 163345099 163345366 -19069876 - Charlie5 DNA MER1_type -2 2622 2355 2049 129 0 0 chr6 163345366 163345678 -19069564 - AluSx SINE Alu 0 316 5 8592 184 55 61 chr6 163345678 163348046 -19067196 - Charlie5 DNA MER1_type -269 2355 1 2011 116 7 0 chr6 163348853 163349129 -19066113 - AluSx SINE Alu -32 280 3 2062 117 30 3 chr6 163349376 163349674 -19065568 + AluSq SINE Alu 1 306 -7 1793 161 0 10 chr6 163349676 163349974 -19065268 + AluJo SINE Alu 1 295 -17 222 62 0 0 chr6 163351923 163351955 -19063287 + (TC)n Simple_repeat Simple_repeat 1 32 0 1571 252 102 94 chr6 163351955 163353279 -19061963 + L1MC4a LINE L1 5347 6681 -1127 1159 252 136 53 chr6 163353288 163353459 -19061783 + L1MC4 LINE L1 6855 7010 -1032 2078 124 3 0 chr6 163353459 163353768 -19061474 + AluSp SINE Alu 1 310 0 1159 252 136 53 chr6 163353768 163354353 -19060889 + L1MC4 LINE L1 7010 7675 -367 1368 306 34 24 chr6 163354429 163355011 -19060231 - MER20B DNA MER1_type -107 676 89 642 255 91 3 chr6 163355021 163355389 -19059853 - LTR16A LTR ERVL -21 429 23 2000 229 100 30 chr6 163355791 163355990 -19059252 - MER82 DNA MER2_type -21 632 448 2538 47 0 0 chr6 163355990 163356291 -19058951 + AluY SINE Alu 3 303 -8 2000 229 100 30 chr6 163356291 163356659 -19058583 - MER82 DNA MER2_type -205 448 25 1849 253 74 63 chr6 163356698 163356877 -19058365 + L1ME3A LINE L1 4161 4337 -1833 1001 95 0 7 chr6 163356877 163357024 -19058218 + L1PB1 LINE L1 6006 6151 0 1849 253 74 63 chr6 163357024 163358843 -19056399 + L1ME3A LINE L1 4337 6168 -2 855 260 29 103 chr6 163359593 163360109 -19055133 - L2 LINE L2 -1 3312 2835 15310 133 13 25 chr6 163360109 163362945 -19052297 + L1P4 LINE L1 2752 5543 -625 * 23471 98 16 11 chr6 163362941 163366393 -19048849 + L1P LINE L1 74 3543 -2603 3878 40 6 0 chr6 163366393 163366862 -19048380 + L1PA6 LINE L1 5679 6154 0 655 116 0 0 chr6 163366871 163366966 -19048276 + AluSc SINE Alu 202 296 -13 1416 181 132 38 chr6 163367498 163367924 -19047318 + MER31B LTR ERV1 1 466 0 201 343 45 30 chr6 163368984 163369051 -19046191 + L2 LINE L2 3121 3188 -84 350 288 98 38 chr6 163369081 163369265 -19045977 + LTR50 LTR ERVL 447 641 -154 1254 189 15 105 chr6 163369267 163369659 -19045583 + MLT1A1 LTR MaLR 3 359 -6 317 132 103 0 chr6 163369715 163369783 -19045459 + LTR50 LTR ERVL 717 791 -4 366 310 74 97 chr6 163370906 163371164 -19044078 - L2 LINE L2 -6 3266 3015 252 331 53 30 chr6 163371316 163371449 -19043793 + MER5A DNA MER1_type 7 142 -47 180 0 0 0 chr6 163371768 163371788 -19043454 + (TG)n Simple_repeat Simple_repeat 2 21 0 2048 125 0 30 chr6 163371788 163372083 -19043159 - AluSx SINE Alu -26 286 1 519 113 0 0 chr6 163372261 163372341 -19042901 - MADE1 DNA Mariner 0 80 1 268 303 78 35 chr6 163372342 163372484 -19042758 + MER5B DNA MER1_type 28 175 -3 746 185 0 0 chr6 163372799 163372929 -19042313 - MLT1A1 LTR MaLR 0 365 236 386 140 47 84 chr6 163372954 163373061 -19042181 - MLT1A1 LTR MaLR -262 103 1 335 278 41 0 chr6 163373967 163374064 -19041178 - MIR SINE MIR -128 134 34 248 250 0 0 chr6 163374723 163374787 -19040455 + (TA)n Simple_repeat Simple_repeat 2 65 0 1815 134 44 4 chr6 163375083 163375380 -19039862 + AluSx SINE Alu 5 312 0 186 106 64 0 chr6 163376008 163376055 -19039187 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 56 0 0 chr6 163376604 163376640 -19038602 + AT_rich Low_complexity Low_complexity 1 36 0 217 319 0 14 chr6 163376917 163376986 -19038256 + (CACG)n Simple_repeat Simple_repeat 3 70 0 292 80 40 0 chr6 163377973 163378023 -19037219 + MADE1 DNA Mariner 1 52 -28 2302 100 0 7 chr6 163379716 163380016 -19035226 + AluSq SINE Alu 1 298 -15 3117 199 7 14 chr6 163380283 163380980 -19034262 - L1P LINE L1 -1696 4450 3759 234 192 0 0 chr6 163381207 163381259 -19033983 + A-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr6 163382093 163382115 -19033127 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 163383526 163383547 -19031695 + AT_rich Low_complexity Low_complexity 1 21 0 478 294 126 7 chr6 163383585 163383894 -19031348 - HAL1 LINE L1 -12 2495 2150 404 270 84 48 chr6 163383954 163384287 -19030955 - HAL1 LINE L1 -482 2025 1681 807 303 99 18 chr6 163384315 163385031 -19030211 - HAL1 LINE L1 -986 1521 748 714 331 8 4 chr6 163385171 163385431 -19029811 - ERVL LTR ERVL -5090 674 414 1771 289 81 9 chr6 163385757 163386341 -19028901 - MLT2E LTR ERVL -2 626 1 26 0 0 0 chr6 163386610 163386636 -19028606 + AT_rich Low_complexity Low_complexity 1 26 0 2037 103 17 14 chr6 163386796 163387086 -19028156 - AluSx SINE Alu -21 291 1 287 374 9 0 chr6 163388559 163388666 -19026576 + L2 LINE L2 3205 3312 -1 31 44 0 0 chr6 163388847 163388892 -19026350 + AT_rich Low_complexity Low_complexity 1 45 0 5255 143 10 0 chr6 163388892 163389926 -19025316 - L1PA15 LINE L1 -13 6803 5755 2866 77 2 129 chr6 163389930 163390449 -19024793 + MLT2A2 LTR ERVL 1 453 0 12720 222 17 45 chr6 163390459 163392553 -19022689 - L1PA15 LINE L1 -1052 5745 3592 680 208 0 0 chr6 163392553 163392673 -19022569 + FLAM_C SINE Alu 12 131 -12 12720 222 17 45 chr6 163392673 163394192 -19021050 - L1PA15 LINE L1 -3205 3592 2119 1908 157 3 10 chr6 163394192 163394492 -19020750 - AluSx SINE Alu -11 301 4 12720 222 17 45 chr6 163394492 163394517 -19020725 - L1PA15 LINE L1 -4678 2119 2095 2416 271 49 18 chr6 163394509 163395334 -19019908 - L1PA15 LINE L1 -4894 1893 700 * 25 65 0 0 chr6 163395777 163395823 -19019419 + AT_rich Low_complexity Low_complexity 1 46 0 2108 178 53 86 chr6 163396567 163396794 -19018448 + MER67C LTR ERV1 3 236 -474 4354 92 5 23 chr6 163396794 163397142 -19018100 + L1PB1 LINE L1 5519 5852 -299 2157 117 0 0 chr6 163397142 163397456 -19017786 - AluSx SINE Alu 0 314 1 4354 92 5 23 chr6 163397456 163397746 -19017496 + L1PB1 LINE L1 5852 6146 -5 2108 178 53 86 chr6 163397746 163398216 -19017026 + MER67C LTR ERV1 236 678 -32 2312 144 2 15 chr6 163398216 163398611 -19016631 + MLT1B LTR MaLR 1 390 0 2108 178 53 86 chr6 163398611 163398630 -19016612 + MER67C LTR ERV1 678 696 -14 234 354 62 17 chr6 163398688 163398866 -19016376 - L2 LINE L2 0 3313 3128 * 318 356 42 0 chr6 163398836 163398954 -19016288 + L2 LINE L2 3189 3311 -2 2004 122 12 9 chr6 163399009 163399328 -19015914 - THE1C LTR MaLR 0 375 56 604 202 8 8 chr6 163400926 163401045 -19014197 - FLAM_A SINE Alu -11 122 4 373 230 0 20 chr6 163401688 163401788 -19013454 - LTR33 LTR ERVL -3 518 421 314 302 0 0 chr6 163401914 163402010 -19013232 - LTR33 LTR ERVL -326 195 100 180 77 0 0 chr6 163402041 163402067 -19013175 + (CAGAG)n Simple_repeat Simple_repeat 2 27 0 2029 141 72 23 chr6 163402080 163402427 -19012815 + THE1B LTR MaLR 1 364 0 2648 49 0 0 chr6 163402446 163402751 -19012491 + AluY SINE Alu 1 305 -6 680 315 47 26 chr6 163402765 163403152 -19012090 - LTR16A LTR ERVL 0 450 56 5068 46 3 0 chr6 163403788 163404402 -19010840 - L1PA4 LINE L1 0 6155 5540 2192 106 0 13 chr6 163405017 163405319 -19009923 + AluSx SINE Alu 2 299 -13 197 259 19 19 chr6 163405595 163405649 -19009593 + MIR SINE MIR 5 58 -204 1078 191 75 51 chr6 163405698 163406033 -19009209 + L1MCa LINE L1 19 361 -6065 605 347 17 14 chr6 163406432 163406792 -19008450 + L1MCa LINE L1 245 605 -6002 2201 114 0 0 chr6 163406836 163407126 -19008116 + AluSq SINE Alu 10 299 -14 1844 160 18 49 chr6 163407260 163407647 -19007595 + THE1C LTR MaLR 1 375 0 33 56 0 0 chr6 163408635 163408689 -19006553 + AT_rich Low_complexity Low_complexity 1 54 0 405 310 84 13 chr6 163408743 163408898 -19006344 + MIR SINE MIR 2 167 -95 2250 126 0 0 chr6 163408907 163409209 -19006033 + AluSq SINE Alu 1 302 -11 1381 186 34 93 chr6 163409303 163409743 -19005499 - LTR47B LTR ERVL -29 414 1 1876 161 13 10 chr6 163410008 163410313 -19004929 - AluJb SINE Alu -6 306 1 4604 172 24 19 chr6 163410586 163411333 -19003909 + L1MB1 LINE L1 4866 5624 -544 2122 135 27 0 chr6 163411333 163411630 -19003612 + AluSx SINE Alu 1 305 -7 4604 172 24 19 chr6 163411630 163412178 -19003064 + L1MB1 LINE L1 5624 6168 0 1446 219 47 26 chr6 163412178 163412562 -19002680 + LTR55 LTR ERV 136 527 -21 256 333 51 0 chr6 163413336 163413414 -19001828 + L2 LINE L2 3144 3225 -47 201 356 23 0 chr6 163413673 163413760 -19001482 - L2 LINE L2 0 3272 3184 792 333 53 15 chr6 163414767 163415274 -18999968 + L2 LINE L2 2727 3251 -62 195 329 185 14 chr6 163415315 163415461 -18999781 - L3b LINE CR1 -103 1480 1310 2254 112 7 0 chr6 163415625 163415930 -18999312 - AluSc SINE Alu 0 309 3 961 81 20 0 chr6 163415934 163416082 -18999160 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1946 115 26 0 chr6 163416082 163416352 -18998890 - AluSc SINE Alu -32 277 1 1917 116 94 0 chr6 163417119 163417394 -18997848 - AluSg SINE Alu -9 301 1 432 200 56 0 chr6 163418470 163418560 -18996682 + L2 LINE L2 3214 3308 -5 189 74 0 0 chr6 163419022 163419049 -18996193 + (CAT)n Simple_repeat Simple_repeat 1 27 0 2420 64 0 3 chr6 163419478 163419774 -18995468 - AluY SINE Alu -16 295 1 360 250 173 0 chr6 163419804 163419908 -18995334 + L2 LINE L2 3192 3313 0 2197 105 3 3 chr6 163419923 163420229 -18995013 + AluSg SINE Alu 2 307 -3 206 318 27 18 chr6 163420691 163420801 -18994441 + L2 LINE L2 2872 2982 -290 432 252 0 0 chr6 163420805 163420912 -18994330 - L1MA10 LINE L1 -11 6323 6217 348 143 13 65 chr6 163420956 163421033 -18994209 - L1MA10 LINE L1 -114 6220 6148 341 216 9 165 chr6 163422506 163422724 -18992518 + MIR SINE MIR 73 256 -6 961 144 7 20 chr6 163423244 163423397 -18991845 + AluJb SINE Alu 114 264 -48 2992 125 49 2 chr6 163423450 163423961 -18991281 + Tigger3(Golem) DNA MER2_type 2480 3014 -15 497 319 69 14 chr6 163423973 163424828 -18990414 + L1M4 LINE L1 2504 3405 -2741 201 196 0 0 chr6 163424872 163424923 -18990319 + T-rich Low_complexity Low_complexity 1 51 0 210 233 0 0 chr6 163424926 163424986 -18990256 + (TA)n Simple_repeat Simple_repeat 2 61 0 187 210 0 97 chr6 163425140 163425202 -18990040 - L2 LINE L2 -592 2722 2667 826 173 0 0 chr6 163426313 163426446 -18988796 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr6 163426486 163426513 -18988729 + AT_rich Low_complexity Low_complexity 1 27 0 280 191 36 24 chr6 163426613 163426697 -18988545 + (TA)n Simple_repeat Simple_repeat 2 86 0 373 275 244 0 chr6 163427269 163427400 -18987842 - MER5A DNA MER1_type 0 189 27 274 250 47 42 chr6 163427846 163427995 -18987247 + MIR SINE MIR 19 167 -63 * 479 240 19 0 chr6 163427986 163428090 -18987152 - L2 LINE L2 -1 3312 3207 789 207 69 47 chr6 163428233 163428465 -18986777 - MIR SINE MIR -12 250 14 22 0 0 0 chr6 163429613 163429635 -18985607 + AT_rich Low_complexity Low_complexity 1 22 0 2127 96 28 0 chr6 163429640 163429931 -18985311 - AluSc SINE Alu -10 299 1 744 155 0 0 chr6 163429966 163430082 -18985160 + FRAM SINE Alu 54 169 -7 841 236 10 0 chr6 163430704 163430903 -18984339 - MER105 DNA DNA -2 202 2 194 339 0 16 chr6 163430916 163430978 -18984264 + L2 LINE L2 3212 3272 0 333 356 52 0 chr6 163431290 163431464 -18983778 - MIR SINE MIR -23 239 57 2174 93 10 7 chr6 163431640 163431931 -18983311 + AluSc SINE Alu 1 292 -17 197 214 0 0 chr6 163432429 163432471 -18982771 - L2 LINE L2 0 3272 3231 753 113 0 4 chr6 163432826 163433020 -18982222 + AluSx SINE Alu 22 292 -20 854 197 82 21 chr6 163433020 163433288 -18981954 - MER33 DNA MER1_type -51 273 1 2252 87 3 20 chr6 163433661 163433961 -18981281 - AluSp SINE Alu -18 295 1 1338 241 154 43 chr6 163435011 163435076 -18980166 - MLT1F LTR MaLR -2 540 484 1631 146 130 0 chr6 163435076 163435329 -18979913 + AluSx SINE Alu 1 286 -26 1338 241 154 43 chr6 163435329 163435749 -18979493 - MLT1F LTR MaLR -58 484 1 278 260 35 133 chr6 163435753 163436038 -18979204 - MLT1F-int LTR MaLR -6 1365 1109 614 211 0 0 chr6 163436041 163436169 -18979073 + L1MA7 LINE L1 4064 4191 -1955 * 1889 184 11 3 chr6 163436162 163436536 -18978706 + L1MB7 LINE L1 5512 5888 -296 2160 110 3 20 chr6 163436536 163436837 -18978405 + AluSx SINE Alu 1 296 -16 2365 253 103 73 chr6 163436842 163437632 -18977610 + MSTD-int LTR MaLR 553 1373 -362 1424 211 10 14 chr6 163437632 163437921 -18977321 + AluJb SINE Alu 1 288 -24 2365 253 103 73 chr6 163437921 163438017 -18977225 + MSTD-int LTR MaLR 1373 1465 -270 1225 163 44 19 chr6 163438017 163438287 -18976955 - LTR43 LTR ERV1 0 602 326 461 128 26 0 chr6 163438287 163438365 -18976877 + MADE1 DNA Mariner 1 80 0 * 1016 150 8 96 chr6 163438365 163438424 -18976818 - LTR43 LTR ERV1 -275 327 264 2188 146 0 0 chr6 163438424 163438733 -18976509 - AluSx SINE Alu -3 309 1 1016 150 8 96 chr6 163438733 163438881 -18976361 - LTR43 LTR ERV1 -338 264 141 2151 116 31 0 chr6 163438881 163439175 -18976067 + AluSg SINE Alu 1 303 -7 1016 150 8 96 chr6 163439175 163439203 -18976039 - LTR43 LTR ERV1 -461 141 112 352 149 162 0 chr6 163439932 163440006 -18975236 - LTR43 LTR ERV1 -516 86 1 1043 143 83 71 chr6 163440006 163440272 -18974970 + MSTD-int LTR MaLR 1462 1730 -5 1093 219 107 83 chr6 163440281 163440318 -18974924 + MSTD LTR MaLR 2 37 -359 1748 172 0 36 chr6 163440318 163440620 -18974622 + AluJb SINE Alu 1 291 -21 1093 219 107 83 chr6 163440620 163440786 -18974456 + MSTD LTR MaLR 37 198 -198 2321 93 3 7 chr6 163440786 163441088 -18974154 - AluSx SINE Alu -11 301 1 1093 219 107 83 chr6 163441088 163441257 -18973985 + MSTD LTR MaLR 198 384 -12 691 183 0 0 chr6 163441271 163441408 -18973834 - L1 LINE L1 -2355 3791 3655 * 4985 158 50 34 chr6 163441403 163443384 -18971858 + L1MA7 LINE L1 4282 6289 -2 1478 229 75 57 chr6 163443377 163444337 -18970905 + L1ME1 LINE L1 1615 2551 -3664 * 293 137 20 0 chr6 163444347 163444398 -18970844 + Tigger5 DNA MER2_type 28 79 -2244 2199 218 100 24 chr6 163444500 163446430 -18968812 + L1ME1 LINE L1 2554 4665 -1550 968 156 0 42 chr6 163446446 163446683 -18968559 - pTR5 LTR ERV1 -1463 975 749 17083 78 17 5 chr6 163446683 163449880 -18965362 - L1PA7 LINE L1 -127 6027 2799 318 225 284 18 chr6 163449882 163450104 -18965138 + L1ME1 LINE L1 5769 6049 -186 185 196 87 0 chr6 163453438 163453484 -18961758 + MER5B DNA MER1_type 2 51 -127 * 313 250 10 83 chr6 163453479 163453575 -18961667 - MER5B DNA MER1_type -89 89 1 2088 91 21 14 chr6 163453789 163454074 -18961168 + AluSc SINE Alu 14 300 -9 617 167 0 0 chr6 163454321 163454417 -18960825 + AluSp/q SINE Alu 202 297 -16 1003 101 183 48 chr6 163454803 163455011 -18960231 + MER46A DNA MER2_type 1 236 0 546 191 126 55 chr6 163457006 163457189 -18958053 - MER20 DNA MER1_type 0 219 24 181 226 19 57 chr6 163457642 163457695 -18957547 + L2 LINE L2 3237 3287 -26 197 237 184 44 chr6 163458166 163458280 -18956962 - MIR SINE MIR -77 185 56 22 0 0 0 chr6 163458574 163458596 -18956646 + GC_rich Low_complexity Low_complexity 1 22 0 1862 167 3 13 chr6 163458907 163459213 -18956029 + AluJo SINE Alu 6 308 -4 3156 194 162 8 chr6 163459247 163460155 -18955087 - L1MC3 LINE L1 -33 7752 6705 551 316 73 22 chr6 163460725 163461041 -18954201 - L2 LINE L2 -597 2717 2386 237 363 65 8 chr6 163460962 163461086 -18954156 + MIR SINE MIR 19 149 -113 * 182 347 0 53 chr6 163461278 163461353 -18953889 + MIR SINE MIR 24 94 -168 28 48 0 0 chr6 163461931 163461973 -18953269 + AT_rich Low_complexity Low_complexity 1 42 0 596 186 78 6 chr6 163464621 163464788 -18950454 - MER96B DNA MER1_type? -238 179 1 231 276 66 26 chr6 163464790 163464866 -18950376 - L2 LINE L2 -53 3219 3141 392 288 57 45 chr6 163465035 163465212 -18950030 - L2 LINE L2 -412 2902 2724 224 244 128 58 chr6 163465362 163465448 -18949794 - MIR SINE MIR -168 94 3 2037 115 20 0 chr6 163465604 163465899 -18949343 - AluSx SINE Alu -11 301 1 1488 127 71 28 chr6 163466232 163466485 -18948757 + AluJb SINE Alu 1 264 -48 2246 100 3 3 chr6 163466864 163467164 -18948078 + AluSq SINE Alu 1 300 -13 488 163 418 7 chr6 163467232 163467385 -18947857 - MER20 DNA MER1_type 0 219 4 265 314 102 27 chr6 163467499 163467792 -18947450 - L2 LINE L2 -446 2868 2554 1017 191 165 23 chr6 163468234 163468543 -18946699 - MLT1A1 LTR MaLR -12 353 1 316 250 36 0 chr6 163468548 163468632 -18946610 + LTR41 LTR ERVL 83 169 -604 294 175 0 16 chr6 163468649 163468712 -18946530 + MLT2D LTR ERVL 1 62 -352 983 252 19 32 chr6 163468766 163469080 -18946162 + MLT2D LTR ERVL 55 364 -50 334 139 19 83 chr6 163469365 163469473 -18945769 + LTR41 LTR ERVL 660 760 -13 257 242 0 0 chr6 163469674 163469736 -18945506 + Tigger5 DNA MER2_type 2257 2318 -5 339 167 0 0 chr6 163469844 163469904 -18945338 + Tigger5 DNA MER2_type 2264 2323 0 296 329 48 20 chr6 163470459 163470605 -18944637 + MIR SINE MIR 20 169 -93 2212 110 0 3 chr6 163470737 163471045 -18944197 + AluSq SINE Alu 1 307 -6 2570 39 0 10 chr6 163471738 163472045 -18943197 - AluY SINE Alu -7 304 1 21 0 0 0 chr6 163474552 163474573 -18940669 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 163475543 163475579 -18939663 + AT_rich Low_complexity Low_complexity 1 36 0 524 324 16 16 chr6 163475970 163476152 -18939090 - MIR3 SINE MIR -7 201 20 472 250 97 51 chr6 163476229 163476425 -18938817 - MIR SINE MIR -7 255 51 7598 115 34 15 chr6 163477089 163478313 -18936929 + HSMAR2 DNA Mariner 54 1301 -1 189 0 0 0 chr6 163478353 163478374 -18936868 + (A)n Simple_repeat Simple_repeat 1 21 0 531 154 9 9 chr6 163478512 163478622 -18936620 + L1MA9 LINE L1 6202 6311 -1 2533 103 28 11 chr6 163479709 163480067 -18935175 + THE1B LTR MaLR 1 364 0 303 344 96 0 chr6 163480282 163480407 -18934835 + MIR3 SINE MIR 50 186 -22 911 128 174 0 chr6 163480445 163480641 -18934601 - MER33 DNA MER1_type -94 230 1 185 206 0 0 chr6 163480721 163480755 -18934487 - L2 LINE L2 -10 3303 3270 335 343 123 63 chr6 163480895 163481064 -18934178 + L2 LINE L2 1815 1972 -1342 2155 125 3 0 chr6 163481064 163481369 -18933873 - AluJb SINE Alu -6 306 1 335 343 123 63 chr6 163481369 163482181 -18933061 + L2 LINE L2 1972 2855 -459 219 232 74 74 chr6 163482229 163482324 -18932918 - MER5A DNA MER1_type -94 95 1 23 0 0 0 chr6 163484470 163484493 -18930749 + AT_rich Low_complexity Low_complexity 1 23 0 2273 127 153 76 chr6 163485647 163486184 -18929058 + L1MC3 LINE L1 7198 7775 -10 791 167 0 0 chr6 163486215 163486347 -18928895 - FLAM_C SINE Alu -1 132 1 273 58 58 0 chr6 163486600 163486652 -18928590 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 362 270 142 25 chr6 163486905 163487109 -18928133 - MIR SINE MIR -27 235 8 2008 110 14 0 chr6 163487778 163488087 -18927155 - AluSq SINE Alu 0 313 1 28 29 0 0 chr6 163490195 163490230 -18925012 + AT_rich Low_complexity Low_complexity 1 35 0 183 184 0 0 chr6 163491064 163491102 -18924140 + T-rich Low_complexity Low_complexity 1 38 0 14968 123 15 24 chr6 163493231 163494713 -18920529 + Tigger1 DNA MER2_type 1 1494 -924 2424 83 0 0 chr6 163494713 163495014 -18920228 + AluY SINE Alu 1 301 -10 14968 123 15 24 chr6 163495014 163495854 -18919388 + Tigger1 DNA MER2_type 1494 2304 -114 2469 37 24 0 chr6 163495854 163496149 -18919093 - AluY SINE Alu -9 302 1 14968 123 15 24 chr6 163496149 163496263 -18918979 + Tigger1 DNA MER2_type 2304 2417 -1 317 346 40 30 chr6 163498482 163498684 -18916558 + MIR SINE MIR 2 205 -57 427 258 57 16 chr6 163498890 163499014 -18916228 + L2 LINE L2 3179 3307 -6 2753 133 17 0 chr6 163499633 163500054 -18915188 + MSTA LTR MaLR 1 428 0 252 0 0 0 chr6 163500308 163500336 -18914906 + (TA)n Simple_repeat Simple_repeat 2 29 0 2398 87 0 3 chr6 163500338 163500647 -18914595 - AluSg SINE Alu 0 310 3 366 289 37 7 chr6 163501050 163501185 -18914057 + MER117 DNA MER1_type 44 182 -15 398 261 14 70 chr6 163501307 163501449 -18913793 - MIR SINE MIR -71 137 21 2077 117 0 0 chr6 163502122 163502412 -18912830 + AluSx SINE Alu 1 290 -22 21 57 0 0 chr6 163502904 163502939 -18912303 + AT_rich Low_complexity Low_complexity 1 35 0 547 305 68 11 chr6 163503966 163504143 -18911099 - MER5A DNA MER1_type 0 189 3 1676 178 10 17 chr6 163505228 163505521 -18909721 + AluJo SINE Alu 5 295 -17 198 71 0 0 chr6 163505825 163505853 -18909389 + (TA)n Simple_repeat Simple_repeat 1 28 0 303 169 70 28 chr6 163505857 163505928 -18909314 - L1MCa LINE L1 -4358 2068 1995 203 267 0 0 chr6 163505934 163505994 -18909248 + (TA)n Simple_repeat Simple_repeat 1 60 0 25 0 0 0 chr6 163506920 163506945 -18908297 + AT_rich Low_complexity Low_complexity 1 25 0 190 366 24 12 chr6 163507227 163507309 -18907933 + L2 LINE L2 2409 2491 -823 370 294 0 9 chr6 163507829 163507938 -18907304 - MIR SINE MIR -105 157 50 218 194 30 75 chr6 163507945 163508012 -18907230 - L2 LINE L2 -9 3263 3200 2249 98 0 0 chr6 163509775 163510062 -18905180 - AluSg SINE Alu 0 310 24 226 310 28 14 chr6 163511402 163511473 -18903769 + MIR SINE MIR 104 175 -87 223 319 96 45 chr6 163511661 163511852 -18903390 - MIR3 SINE MIR -63 145 2 22 35 0 0 chr6 163513164 163513193 -18902049 + AT_rich Low_complexity Low_complexity 1 29 0 2011 141 3 3 chr6 163513632 163513958 -18901284 + AluSx SINE Alu 1 312 0 408 272 35 22 chr6 163514744 163514894 -18900348 - MIR SINE MIR -65 143 4 2059 121 7 13 chr6 163515064 163515362 -18899880 + AluSx SINE Alu 1 296 -16 512 311 150 50 chr6 163516093 163516259 -18898983 + L2 LINE L2 1875 2023 -1291 1751 162 31 0 chr6 163516259 163516549 -18898693 - AluJo SINE Alu -13 299 1 512 311 150 50 chr6 163516549 163517188 -18898054 + L2 LINE L2 2023 2761 -553 426 20 0 0 chr6 163517368 163517419 -18897823 + (CA)n Simple_repeat Simple_repeat 2 52 0 2394 80 7 0 chr6 163517619 163517920 -18897322 - AluSg SINE Alu -7 303 1 25 0 0 0 chr6 163520940 163520965 -18894277 + AT_rich Low_complexity Low_complexity 1 25 0 1565 176 3 35 chr6 163521068 163521381 -18893861 + AluJo SINE Alu 1 303 -9 625 282 169 0 chr6 163522087 163522282 -18892960 - MIR SINE MIR -6 256 29 2564 107 6 6 chr6 163522461 163522825 -18892417 + THE1B LTR MaLR 1 364 0 383 359 22 22 chr6 163523318 163523499 -18891743 - MIR3 SINE MIR -8 200 20 3607 118 9 38 chr6 163526073 163526708 -18888534 + L1MA5A LINE L1 5680 6296 -1 26 30 0 0 chr6 163526708 163526741 -18888501 + AT_rich Low_complexity Low_complexity 1 33 0 282 270 29 51 chr6 163527209 163527346 -18887896 + HAL1 LINE L1 1491 1624 -883 219 321 94 0 chr6 163527577 163527683 -18887559 + L2 LINE L2 1860 1975 -1339 1484 195 24 18 chr6 163527699 163528037 -18887205 + MLT1A1 LTR MaLR 21 360 -5 1781 273 177 24 chr6 163528042 163529183 -18886059 + L2 LINE L2 1984 3313 0 873 318 149 31 chr6 163529263 163529666 -18885576 + L1ME LINE L1 4146 4500 -1646 2397 60 0 0 chr6 163529666 163529976 -18885266 + AluY SINE Alu 1 310 0 873 318 149 31 chr6 163529976 163530452 -18884790 + L1ME LINE L1 4500 5130 -1016 23 33 0 0 chr6 163530454 163530484 -18884758 + AT_rich Low_complexity Low_complexity 1 30 0 345 273 125 30 chr6 163530560 163530927 -18884315 + L1ME LINE L1 5258 5659 -503 1643 161 13 82 chr6 163530989 163531369 -18883873 + MLT1A1 LTR MaLR 1 354 -11 2713 191 31 67 chr6 163531376 163532061 -18883181 + MLT1A1-int LTR MaLR 1 660 -1075 260 183 0 33 chr6 163532198 163532258 -18882984 + MLT1A1-int LTR MaLR 679 736 -999 1167 198 18 98 chr6 163532463 163532660 -18882582 + MLT1A1-int LTR MaLR 954 1165 -570 564 26 39 13 chr6 163532660 163532738 -18882504 - MADE1 DNA Mariner 0 80 1 1167 198 18 98 chr6 163532738 163532957 -18882285 + MLT1A1-int LTR MaLR 1165 1735 0 1365 204 42 34 chr6 163532966 163533319 -18881923 + MLT1A1 LTR MaLR 10 365 0 1634 176 50 23 chr6 163533714 163534016 -18881226 + AluJo SINE Alu 1 310 -2 991 85 30 0 chr6 163534110 163534275 -18880967 + (TA)n Simple_repeat Simple_repeat 1 170 0 318 50 0 0 chr6 163534289 163534329 -18880913 + (TA)n Simple_repeat Simple_repeat 1 40 0 1964 128 3 3 chr6 163534565 163534890 -18880352 + AluSx SINE Alu 1 325 0 921 307 124 32 chr6 163536092 163536681 -18878561 + L3 LINE CR1 752 1394 -183 405 0 0 0 chr6 163537035 163537080 -18878162 + (TG)n Simple_repeat Simple_repeat 2 46 0 31 0 0 0 chr6 163537377 163537408 -18877834 + AT_rich Low_complexity Low_complexity 1 31 0 499 313 42 58 chr6 163537637 163537730 -18877512 + MIR SINE MIR 5 98 -164 3190 130 84 0 chr6 163537730 163538216 -18877026 - MER1A DNA MER1_type 0 527 1 499 313 42 58 chr6 163538216 163538381 -18876861 + MIR SINE MIR 98 259 -3 420 286 123 19 chr6 163539657 163539811 -18875431 + MIR SINE MIR 22 191 -71 384 208 17 33 chr6 163540075 163540172 -18875070 + MER5A DNA MER1_type 4 98 -91 181 355 73 45 chr6 163540425 163540535 -18874707 + L2 LINE L2 3044 3156 -116 241 300 62 75 chr6 163540588 163540748 -18874494 + L2 LINE L2 3028 3185 -87 3849 207 29 29 chr6 163542256 163543161 -18872081 + L1M1 LINE L1 16 920 -6645 * 8289 100 32 17 chr6 163543159 163544545 -18870697 + L1M1 LINE L1 1846 3253 -4312 281 104 42 0 chr6 163544545 163544593 -18870649 + Alu SINE Alu 1 50 -252 486 95 14 0 chr6 163544694 163544768 -18870474 + MLT1A1 LTR MaLR 291 365 0 314 295 119 92 chr6 163545493 163545940 -18869302 - L1M2 LINE L1 -5514 1335 877 233 215 0 31 chr6 163545940 163546005 -18869237 + C-rich Low_complexity Low_complexity 2 64 0 309 258 100 109 chr6 163546252 163546574 -18868668 - L1M2 LINE L1 -5723 1126 580 297 75 0 0 chr6 163546737 163546777 -18868465 + (TG)n Simple_repeat Simple_repeat 2 41 0 185 0 0 39 chr6 163548520 163548546 -18866696 + (TAA)n Simple_repeat Simple_repeat 3 27 0 217 286 32 0 chr6 163549288 163549351 -18865891 + L2 LINE L2 3208 3272 0 461 319 100 19 chr6 163549632 163549842 -18865400 + MIR SINE MIR 17 243 -19 2101 125 3 18 chr6 163549956 163550292 -18864950 + MER1B DNA MER1_type 1 331 -8 320 345 103 11 chr6 163550521 163550695 -18864547 - L1MC/D LINE L1 -2305 5503 5314 1675 134 87 4 chr6 163551385 163551661 -18863581 - AluJb SINE Alu -13 299 1 235 186 0 22 chr6 163552602 163552651 -18862591 + MIR SINE MIR 103 146 -62 280 313 83 0 chr6 163552915 163553011 -18862231 - L2 LINE L2 -13 3259 3156 201 283 166 64 chr6 163556667 163557010 -18858232 - L2 LINE L2 -649 2665 2288 290 360 22 43 chr6 163557051 163557190 -18858052 + L3 LINE CR1 971 1106 -471 2262 91 3 10 chr6 163557540 163557838 -18857404 - AluSq SINE Alu -17 296 1 414 335 108 6 chr6 163557839 163558015 -18857227 + L3 LINE CR1 1372 1565 -12 270 206 0 0 chr6 163558211 163558274 -18856968 + (CATA)n Simple_repeat Simple_repeat 2 64 0 217 275 83 33 chr6 163558395 163558515 -18856727 - L2 LINE L2 -1318 1996 1871 338 306 113 36 chr6 163559126 163559401 -18855841 + L2 LINE L2 2909 3204 -109 2082 120 3 29 chr6 163559801 163560151 -18855091 + THE1C LTR MaLR 1 341 -34 29751 106 11 57 chr6 163560160 163566604 -18848638 - L1PA7 LINE L1 0 6154 12 278 146 0 21 chr6 163566604 163566652 -18848590 + THE1C LTR MaLR 382 428 0 357 24 0 0 chr6 163566791 163566833 -18848409 + (TG)n Simple_repeat Simple_repeat 2 43 0 444 211 10 19 chr6 163568224 163568328 -18846914 - L2 LINE L2 -5 3308 3206 22 0 0 0 chr6 163569584 163569606 -18845636 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr6 163569785 163569827 -18845415 + AT_rich Low_complexity Low_complexity 1 42 0 2276 92 0 3 chr6 163569910 163570203 -18845039 - AluSq SINE Alu -21 292 1 1984 113 36 4 chr6 163570320 163570594 -18844648 + AluSq SINE Alu 1 283 -30 360 352 110 22 chr6 163571118 163571680 -18843562 + L2 LINE L2 2454 3059 -213 28 0 0 0 chr6 163571791 163571819 -18843423 + AT_rich Low_complexity Low_complexity 1 28 0 191 195 0 49 chr6 163571870 163571911 -18843331 + L2 LINE L2 3263 3301 -12 518 297 53 30 chr6 163572116 163572406 -18842836 + L2 LINE L2 2756 3050 -263 645 75 0 11 chr6 163572406 163572499 -18842743 - AluY SINE Alu -6 305 214 371 305 11 0 chr6 163572584 163572679 -18842563 + L2 LINE L2 3218 3313 0 367 306 22 52 chr6 163572810 163572944 -18842298 + MIR SINE MIR 32 161 -101 220 267 0 0 chr6 163573094 163573139 -18842103 + MIR SINE MIR 49 93 -169 293 214 118 0 chr6 163573222 163573307 -18841935 + HsTC2 DNA Tc2 2 1814 -84 675 135 214 14 chr6 163574602 163574778 -18840464 - THE1C LTR MaLR -214 212 1 1930 156 121 23 chr6 163575261 163575651 -18839591 - MSTA LTR MaLR 0 428 1 1109 197 12 33 chr6 163575814 163576058 -18839184 + MER8 DNA MER2_type 1 239 0 198 367 94 31 chr6 163576069 163576167 -18839075 + MIR SINE MIR 25 134 -128 2141 160 36 0 chr6 163576167 163576555 -18838687 - MER57A LTR ERV1 0 403 2 198 367 94 31 chr6 163576555 163576584 -18838658 + MIR SINE MIR 134 160 -102 400 206 0 28 chr6 163576711 163576818 -18838424 - L1MA5 LINE L1 0 6300 6197 457 296 51 58 chr6 163577376 163577614 -18837628 - MIR SINE MIR -18 244 11 939 315 131 45 chr6 163578960 163579782 -18835460 + L2 LINE L2 116 1008 -2306 893 113 30 0 chr6 163579831 163579964 -18835278 + AluSg/x SINE Alu 174 310 0 257 302 19 47 chr6 163580652 163580758 -18834484 - MIR3 SINE MIR -24 184 82 372 266 156 32 chr6 163580800 163581029 -18834213 - MIR SINE MIR -7 255 3 21 36 0 0 chr6 163581779 163581807 -18833435 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr6 163582338 163582380 -18832862 + AT_rich Low_complexity Low_complexity 1 42 0 1898 135 7 11 chr6 163582890 163583172 -18832070 + AluSx SINE Alu 15 295 -17 424 317 50 44 chr6 163583269 163583476 -18831766 - MIR3 SINE MIR -52 210 5 1891 113 0 119 chr6 163585442 163585779 -18829463 + AluSx SINE Alu 1 297 -15 444 100 133 44 chr6 163586324 163586414 -18828828 - Tigger7 DNA MER2_type 0 2487 2390 1365 175 56 24 chr6 163586442 163586609 -18828633 - Tigger7 DNA MER2_type -466 267 88 1622 165 6 51 chr6 163586609 163586924 -18828318 - AluJo SINE Alu -11 301 1 1365 175 56 24 chr6 163586924 163587007 -18828235 - Tigger7 DNA MER2_type -645 88 9 27 29 0 0 chr6 163587424 163587458 -18827784 + AT_rich Low_complexity Low_complexity 1 34 0 237 108 0 0 chr6 163588000 163588037 -18827205 + (TA)n Simple_repeat Simple_repeat 2 38 0 1544 250 97 34 chr6 163588890 163589414 -18825828 - MLT1F1 LTR MaLR 0 567 12 356 286 12 94 chr6 163589565 163589736 -18825506 - MLT1F1-int LTR MaLR -233 1138 982 2153 95 25 0 chr6 163589958 163590254 -18824988 - AluSx SINE Alu 0 303 1 452 268 0 59 chr6 163590504 163590657 -18824585 + MIR SINE MIR 82 225 -37 23 54 0 0 chr6 163591137 163591174 -18824068 + AT_rich Low_complexity Low_complexity 1 37 0 235 239 0 0 chr6 163591715 163591761 -18823481 - MER5C DNA MER1_type -248 76 31 200 382 24 8 chr6 163591836 163591959 -18823283 + MIR3 SINE MIR 52 176 -32 306 345 56 22 chr6 163592629 163592861 -18822381 + L2 LINE L2 1687 1926 -1388 378 310 82 6 chr6 163592889 163593060 -18822182 - LTR67 LTR ERVL -32 525 342 1763 303 101 35 chr6 163594061 163595602 -18819640 + L1MEc LINE L1 331 1972 -4424 3365 252 105 54 chr6 163595603 163596975 -18818267 + L1MEc LINE L1 2158 3459 -2756 2338 97 0 0 chr6 163596975 163597284 -18817958 + AluSc SINE Alu 1 309 0 3365 252 105 54 chr6 163597284 163597877 -18817365 + L1MEc LINE L1 3459 4205 -2010 2130 125 3 0 chr6 163597877 163598172 -18817070 + AluSx SINE Alu 1 296 -16 3365 252 105 54 chr6 163598172 163598480 -18816762 + L1MEc LINE L1 4205 4496 -1719 1262 137 78 19 chr6 163598498 163598769 -18816473 + MER45R DNA AcHobo 1189 1475 -106 1046 224 106 11 chr6 163598770 163599086 -18816156 + L1MEc LINE L1 4505 4864 -1351 2062 125 17 0 chr6 163599086 163599382 -18815860 + AluSx SINE Alu 1 301 -11 1046 224 106 11 chr6 163599382 163599444 -18815798 + L1MEc LINE L1 4864 4919 -1296 23 0 0 0 chr6 163599481 163599504 -18815738 + AT_rich Low_complexity Low_complexity 1 23 0 385 231 60 69 chr6 163599745 163599929 -18815313 - L1MC4 LINE L1 -95 7713 7577 314 303 26 0 chr6 163600000 163600152 -18815090 - L1MC5 LINE L1 -520 7441 7286 * 1543 280 161 46 chr6 163600119 163601581 -18813661 - L1MC4 LINE L1 -400 7488 5779 588 268 118 46 chr6 163603372 163603827 -18811415 + LTR33 LTR ERVL 4 519 -2 326 303 152 18 chr6 163604663 163604828 -18810414 + MIR SINE MIR 20 206 -56 361 220 124 62 chr6 163605236 163605413 -18809829 - MIR SINE MIR -10 252 65 1089 181 68 78 chr6 163605507 163605816 -18809426 + MER5C DNA MER1_type 5 310 -14 226 172 32 75 chr6 163606029 163606122 -18809120 + L1MC4 LINE L1 6614 6702 -1340 231 280 0 0 chr6 163606124 163606217 -18809025 + (TA)n Simple_repeat Simple_repeat 2 94 0 230 297 0 22 chr6 163606220 163606311 -18808931 + L1MC4 LINE L1 6614 6702 -1340 427 145 16 48 chr6 163606342 163606466 -18808776 + (TATATG)n Simple_repeat Simple_repeat 6 125 0 238 256 47 0 chr6 163606466 163606552 -18808690 - L1MC4 LINE L1 -1339 6703 6614 261 0 0 0 chr6 163606552 163606581 -18808661 + (CA)n Simple_repeat Simple_repeat 2 30 0 326 260 27 3 chr6 163606622 163606701 -18808541 + MER2 DNA MER2_type 12 89 -150 263 241 19 0 chr6 163606748 163606802 -18808440 + MER2 DNA MER2_type 290 344 -1 15305 151 15 28 chr6 163607455 163607483 -18807759 - L1MA2 LINE L1 0 7723 7696 288 0 0 0 chr6 163607483 163607515 -18807727 + (CA)n Simple_repeat Simple_repeat 2 33 0 15305 151 15 28 chr6 163607515 163608796 -18806446 - L1MA2 LINE L1 -27 7696 6400 2026 119 0 7 chr6 163608796 163609082 -18806160 - AluSx SINE Alu -18 294 11 15305 151 15 28 chr6 163609082 163610190 -18805052 - L1MA2 LINE L1 -1323 6400 5279 2359 85 3 0 chr6 163610190 163610495 -18804747 - AluY SINE Alu -5 306 1 15305 151 15 28 chr6 163610495 163612613 -18802629 - L1MA2 LINE L1 -2444 5279 3252 2283 99 0 0 chr6 163612613 163612906 -18802336 - AluY SINE Alu -18 293 1 15305 151 15 28 chr6 163612906 163613085 -18802157 - L1MA2 LINE L1 -4471 3252 3072 2136 172 3 8 chr6 163614042 163614409 -18800833 - MLT1A1 LTR MaLR 0 365 1 218 262 71 24 chr6 163614478 163614562 -18800680 + L2 LINE L2 2227 2314 -1000 419 282 27 0 chr6 163614576 163614686 -18800556 - MIR SINE MIR -5 257 145 691 275 163 17 chr6 163614686 163614981 -18800261 + L2 LINE L2 2316 2653 -661 4470 139 77 73 chr6 163615008 163616385 -18798857 + pTR5 LTR ERV1 743 2438 0 627 346 88 60 chr6 163616385 163616422 -18798820 + L2 LINE L2 2677 2711 -602 2319 88 10 0 chr6 163616422 163616730 -18798512 + AluY SINE Alu 1 311 0 627 346 88 60 chr6 163616730 163617288 -18797954 + L2 LINE L2 2711 3294 -19 2429 172 37 5 chr6 163617878 163618309 -18796933 + MSTB2 LTR MaLR 13 457 0 2139 114 16 0 chr6 163619304 163619611 -18795631 - AluSp SINE Alu -1 312 1 385 19 37 0 chr6 163620334 163620388 -18794854 + (CA)n Simple_repeat Simple_repeat 1 56 0 198 191 0 0 chr6 163620498 163620540 -18794702 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1123 266 86 78 chr6 163620650 163621552 -18793690 - L2 LINE L2 -1 3312 2435 574 290 76 17 chr6 163622495 163622733 -18792509 + MIR SINE MIR 1 252 -10 377 313 66 62 chr6 163622830 163623057 -18792185 + L2 LINE L2 3039 3266 -6 2084 106 3 0 chr6 163623342 163623624 -18791618 + AluSx SINE Alu 2 317 0 194 0 61 30 chr6 163623624 163623657 -18791585 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 1991 96 75 0 chr6 163623731 163624012 -18791230 + AluSx SINE Alu 1 302 -10 203 289 0 0 chr6 163624174 163624226 -18791016 + L2 LINE L2 2934 2985 -287 364 254 55 9 chr6 163624314 163624424 -18790818 - MIR SINE MIR -11 251 137 22 0 0 0 chr6 163625569 163625591 -18789651 + AT_rich Low_complexity Low_complexity 1 22 0 966 209 41 0 chr6 163625601 163625773 -18789469 + AluJo SINE Alu 5 183 -129 22 88 0 0 chr6 163625802 163625859 -18789383 + AT_rich Low_complexity Low_complexity 1 57 0 257 91 68 0 chr6 163625865 163625909 -18789333 - L1PBa LINE L1 -4018 2845 2799 9234 110 16 4 chr6 163625911 163627849 -18787393 - L1PBa LINE L1 -4120 2743 636 997 190 5 0 chr6 163627850 163628045 -18787197 - L1PBa LINE L1 -6662 201 6 1845 198 44 73 chr6 163628089 163628609 -18786633 + MLT1D LTR MaLR 1 505 0 6255 216 9 8 chr6 163628850 163630365 -18784877 + L1 LINE L1 2128 3643 -2503 594 82 0 51 chr6 163630368 163630466 -18784776 - L1PB1 LINE L1 -244 5907 5815 935 217 3 89 chr6 163630609 163630922 -18784320 - L1P LINE L1 -2500 3646 3361 970 164 45 6 chr6 163630922 163631099 -18784143 - MSTB1 LTR MaLR -179 253 70 805 249 10 5 chr6 163631116 163631325 -18783917 + Tigger5 DNA MER2_type 674 883 -1440 1937 173 47 6 chr6 163631349 163631708 -18783534 - MSTB LTR MaLR -8 418 45 1606 147 51 16 chr6 163631705 163632017 -18783225 + LTR18B LTR ERVL 292 614 0 * 1443 148 15 7 chr6 163632038 163632309 -18782933 + HERVL18 LTR ERVL 19 291 -5756 725 237 12 0 chr6 163632309 163632482 -18782760 + HERVL18 LTR ERVL 492 666 -5381 1074 177 6 13 chr6 163632510 163632872 -18782370 + HERVL18 LTR ERVL 1388 1810 -4237 594 177 17 9 chr6 163632871 163633098 -18782144 + HERVL18 LTR ERVL 2119 2452 -3595 * 903 176 0 2 chr6 163633097 163633292 -18781950 + HERVL18 LTR ERVL 2720 2959 -3088 3044 176 25 2 chr6 163633341 163633869 -18781373 + HERVL18 LTR ERVL 2952 3491 -2556 3931 121 30 15 chr6 163634070 163634675 -18780567 + LTR18B LTR ERVL 1 614 0 330 308 39 31 chr6 163634700 163634830 -18780412 - HAL1b LINE L1 -1110 238 108 1840 192 144 9 chr6 163634833 163635276 -18779966 - MLT1D LTR MaLR 0 505 3 180 0 0 0 chr6 163635656 163635676 -18779566 + (T)n Simple_repeat Simple_repeat 1 20 0 2328 91 0 13 chr6 163635874 163636182 -18779060 + AluSg SINE Alu 1 304 -6 406 230 103 0 chr6 163636343 163636469 -18778773 - L1MA9 LINE L1 -38 6274 6136 216 0 0 0 chr6 163636787 163636811 -18778431 + (T)n Simple_repeat Simple_repeat 1 24 0 1049 299 72 0 chr6 163637087 163637408 -18777834 - L2 LINE L2 -598 2716 2373 285 266 26 18 chr6 163637607 163637720 -18777522 + CT-rich Low_complexity Low_complexity 3 116 0 325 273 10 10 chr6 163637720 163637819 -18777423 - MLT1J2 LTR MaLR -284 166 68 456 318 149 19 chr6 163637819 163638185 -18777057 - L1 LINE L1 -767 5379 4978 388 293 40 12 chr6 163638428 163638681 -18776561 - L1 LINE L1 -1487 4659 4400 220 193 35 35 chr6 163638876 163638933 -18776309 + MIR SINE MIR 196 252 -10 501 304 52 45 chr6 163639712 163640093 -18775149 - ERVL LTR ERVL -350 5414 5031 525 294 52 67 chr6 163640117 163640349 -18774893 - ERVL LTR ERVL -1954 3810 3576 2035 131 27 56 chr6 163640349 163640724 -18774518 + THE1B LTR MaLR 1 364 0 525 294 52 67 chr6 163640724 163640971 -18774271 - ERVL LTR ERVL -2188 3576 3338 568 133 0 0 chr6 163640972 163641062 -18774180 - 5S rRNA rRNA -31 90 1 1931 142 0 3 chr6 163641105 163641394 -18773848 + AluJb SINE Alu 21 308 -4 576 275 85 11 chr6 163641509 163641950 -18773292 + MLT1G1 LTR MaLR 6 592 -3 640 321 57 32 chr6 163642021 163642392 -18772850 - ERVL LTR ERVL -2566 3088 2709 22 0 0 0 chr6 163642849 163642871 -18772371 + AT_rich Low_complexity Low_complexity 1 22 0 2270 130 25 0 chr6 163642954 163643307 -18771935 + THE1B LTR MaLR 3 364 0 1227 224 12 29 chr6 163645792 163646135 -18769107 + L1M3 LINE L1 5402 5738 -442 1750 57 0 9 chr6 163646727 163646954 -18768288 + L1PA8 LINE L1 5944 6168 -4 2797 96 0 0 chr6 163647100 163647464 -18767778 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr6 163649083 163649105 -18766137 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr6 163650361 163650391 -18764851 + AT_rich Low_complexity Low_complexity 1 30 0 392 322 82 85 chr6 163651064 163651756 -18763486 - L2 LINE L2 -1 3271 2587 2245 113 0 22 chr6 163653076 163653394 -18761848 + AluSx SINE Alu 1 311 -1 372 327 20 0 chr6 163653598 163653748 -18761494 - L2 LINE L2 -1004 2310 2158 202 227 0 45 chr6 163653775 163653841 -18761401 + (TG)n Simple_repeat Simple_repeat 2 64 0 201 74 0 0 chr6 163655190 163655217 -18760025 + (TTC)n Simple_repeat Simple_repeat 2 28 0 2331 70 0 3 chr6 163655284 163655585 -18759657 + AluY SINE Alu 1 300 -11 462 231 83 0 chr6 163656879 163656987 -18758255 + MIR SINE MIR 51 167 -95 260 213 113 0 chr6 163657052 163657132 -18758110 + MIR SINE MIR 173 261 -1 196 274 41 27 chr6 163657458 163657531 -18757711 - MIR SINE MIR -115 147 74 2286 127 0 0 chr6 163658891 163659199 -18756043 - AluSx SINE Alu -4 308 1 264 319 62 28 chr6 163661275 163661419 -18753823 - L2 LINE L2 -1 3312 3164 2192 108 4 0 chr6 163661805 163662118 -18753124 - AluSp SINE Alu 0 318 5 282 29 0 0 chr6 163663217 163663252 -18751990 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 488 300 107 30 chr6 163663625 163663858 -18751384 - MIR SINE MIR -10 252 2 595 311 94 30 chr6 163664382 163664710 -18750532 - L2 LINE L2 -37 3276 2928 687 247 23 0 chr6 163664759 163664933 -18750309 - L2 LINE L2 -1853 1461 1284 1875 169 43 13 chr6 163664938 163665311 -18749931 - MLT1B LTR MaLR -6 384 1 186 118 0 0 chr6 163665554 163665588 -18749654 + (A)n Simple_repeat Simple_repeat 1 34 0 4777 157 63 14 chr6 163666859 163667333 -18747909 - L1MA6 LINE L1 -9 6291 5842 2215 52 11 4 chr6 163667333 163667602 -18747640 - AluY SINE Alu -7 304 34 4777 157 63 14 chr6 163667602 163668627 -18746615 - L1MA6 LINE L1 -458 5842 4714 516 182 106 10 chr6 163668630 163668828 -18746414 + L1 LINE L1 3088 3304 -2842 231 36 0 0 chr6 163668948 163668976 -18746266 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 2027 164 12 16 chr6 163668982 163669408 -18745834 + L1 LINE L1 3314 3737 -2409 185 62 0 31 chr6 163669416 163669448 -18745794 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 7215 24 0 0 chr6 163669448 163670525 -18744717 - L1PA3 LINE L1 -24 6131 5055 4640 163 28 20 chr6 163670525 163671499 -18743743 + L1 LINE L1 3727 4707 -1439 256 303 88 29 chr6 163672536 163672810 -18742432 + L1ME4a LINE L1 5603 5892 -229 316 273 68 38 chr6 163672853 163672985 -18742257 + L1ME4a LINE L1 5979 6114 -7 2225 146 77 20 chr6 163673215 163673620 -18741622 - MSTA LTR MaLR 0 428 1 240 35 0 0 chr6 163673922 163673951 -18741291 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 282 250 91 0 chr6 163674630 163674718 -18740524 - MER94 DNA DNA -38 96 1 1866 191 40 29 chr6 163674719 163675256 -18739986 + MLT2A2 LTR ERVL 1 552 -2 1494 198 68 10 chr6 163676501 163676794 -18738448 + MLT1A1 LTR MaLR 53 362 -3 1637 182 31 20 chr6 163676835 163677187 -18738055 + MER63B DNA MER1_type 1 356 -80 7712 25 0 0 chr6 163677409 163678387 -18736855 + L1PA4 LINE L1 5178 6155 0 451 247 0 0 chr6 163678408 163678501 -18736741 + MER63B DNA MER1_type 341 433 -2 426 272 0 29 chr6 163678522 163678625 -18736617 + MER5A DNA MER1_type 6 105 -84 2194 97 13 13 chr6 163679244 163679555 -18735687 - AluSp SINE Alu -2 311 1 1732 308 43 35 chr6 163679573 163680036 -18735206 + ERVL LTR ERVL 4064 4537 -1227 2178 102 3 0 chr6 163680036 163680330 -18734912 - AluSq SINE Alu -13 300 6 1732 308 43 35 chr6 163680330 163680610 -18734632 + ERVL LTR ERVL 4537 4813 -951 554 209 64 48 chr6 163680668 163680855 -18734387 + LTR41 LTR ERVL 1 190 -583 1823 134 25 38 chr6 163681166 163681480 -18733762 - AluSg SINE Alu 0 310 1 1436 232 54 25 chr6 163681892 163682340 -18732902 - MLT1C LTR MaLR -6 461 1 24 53 0 0 chr6 163682544 163682582 -18732660 + AT_rich Low_complexity Low_complexity 1 38 0 331 127 79 0 chr6 163684079 163684142 -18731100 - MADE1 DNA Mariner 0 80 13 291 320 94 8 chr6 163684345 163684473 -18730769 - L2 LINE L2 0 3272 3134 1118 147 9 9 chr6 163684491 163684702 -18730540 - L1MA8 LINE L1 -2 6289 6079 335 303 43 43 chr6 163684728 163684913 -18730329 - L2 LINE L2 -8 3305 3121 42 20 0 0 chr6 163685195 163685244 -18729998 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr6 163685649 163685684 -18729558 + AT_rich Low_complexity Low_complexity 1 35 0 510 303 0 89 chr6 163686182 163686463 -18728779 + MLT1K LTR MaLR 326 581 -7 27 62 0 0 chr6 163687916 163687964 -18727278 + AT_rich Low_complexity Low_complexity 1 48 0 229 308 0 8 chr6 163688219 163688336 -18726906 - L1M4 LINE L1 -3166 2980 2865 534 257 232 12 chr6 163688723 163689046 -18726196 + L2 LINE L2 1300 1693 -1621 438 248 83 96 chr6 163689786 163690016 -18725226 + MIR SINE MIR 26 252 -10 1509 246 126 22 chr6 163691121 163691572 -18723670 - MLT1D LTR MaLR 0 505 8 508 170 0 0 chr6 163691714 163691808 -18723434 - L1MA6 LINE L1 -13 6287 6194 21 0 0 0 chr6 163691809 163691830 -18723412 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 163692665 163692694 -18722548 + AT_rich Low_complexity Low_complexity 1 29 0 801 238 31 5 chr6 163692886 163693079 -18722163 + MER3 DNA MER1_type 9 206 -3 231 36 0 0 chr6 163695047 163695075 -18720167 + (TG)n Simple_repeat Simple_repeat 2 29 0 2281 160 8 5 chr6 163695077 163695464 -18719778 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr6 163697346 163697368 -18717874 + AT_rich Low_complexity Low_complexity 1 22 0 2196 105 24 7 chr6 163697563 163697859 -18717383 + AluSq SINE Alu 1 301 -12 27 49 0 0 chr6 163697984 163698025 -18717217 + AT_rich Low_complexity Low_complexity 1 41 0 1826 181 0 10 chr6 163699258 163699572 -18715670 + AluJb SINE Alu 1 311 -1 378 172 54 0 chr6 163700015 163700108 -18715134 + L1ME4a LINE L1 2913 3010 -3136 594 153 0 0 chr6 163700110 163700221 -18715021 + C-rich Low_complexity Low_complexity 1 111 0 1001 131 13 20 chr6 163700221 163700374 -18714868 - AluJb SINE Alu -24 288 137 529 305 70 31 chr6 163700416 163700803 -18714439 + L1ME4a LINE L1 3131 3532 -2614 1827 91 8 0 chr6 163700887 163701141 -18714101 + L1PB1 LINE L1 5896 6151 0 236 337 59 16 chr6 163701412 163701667 -18713575 + L1ME4a LINE L1 4783 5048 -1098 499 306 93 68 chr6 163701841 163701865 -18713377 + L1ME4a LINE L1 5274 5296 -825 810 173 0 0 chr6 163701865 163701992 -18713250 + FLAM_C SINE Alu 1 127 -6 499 306 93 68 chr6 163701992 163702314 -18712928 + L1ME4a LINE L1 5296 5640 -481 1266 249 141 22 chr6 163702314 163702525 -18712717 + LTR40a LTR ERVL 3 187 -332 1985 148 10 0 chr6 163702525 163702828 -18712414 - AluSg SINE Alu -2 308 3 1266 249 141 22 chr6 163702828 163703078 -18712164 + LTR40a LTR ERVL 187 519 0 499 306 93 68 chr6 163703078 163703270 -18711972 + L1ME4a LINE L1 5640 5826 -295 1677 163 58 34 chr6 163705490 163705871 -18709371 + MLT1B LTR MaLR 1 390 0 2254 116 0 0 chr6 163705931 163706225 -18709017 + AluSx SINE Alu 3 296 -16 1340 271 48 8 chr6 163706541 163706895 -18708347 + MER119 DNA MER1_type 3 370 -213 260 111 0 0 chr6 163706932 163706968 -18708274 + MER119 DNA MER1_type 546 581 -2 405 0 0 0 chr6 163707319 163707364 -18707878 + (TA)n Simple_repeat Simple_repeat 2 46 0 1242 171 70 56 chr6 163707428 163707714 -18707528 - AluJb SINE Alu -10 292 3 1294 228 111 70 chr6 163708356 163708843 -18706399 + MER51C LTR ERV1 127 633 -7 23 0 0 0 chr6 163709501 163709524 -18705718 + AT_rich Low_complexity Low_complexity 1 23 0 293 295 105 0 chr6 163709525 163709620 -18705622 - MER5A DNA MER1_type 0 189 85 365 354 127 0 chr6 163709685 163709866 -18705376 - L2 LINE L2 -504 2810 2607 318 26 0 0 chr6 163710888 163710927 -18704315 + (TG)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr6 163712501 163712523 -18702719 + AT_rich Low_complexity Low_complexity 1 22 0 197 233 0 0 chr6 163713844 163713887 -18701355 + L3b LINE CR1 1539 1581 -2 642 60 0 0 chr6 163714399 163714482 -18700760 + (CAATA)n Simple_repeat Simple_repeat 5 87 0 2164 112 0 3 chr6 163714558 163714852 -18700390 + AluSx SINE Alu 6 298 -14 2230 112 0 3 chr6 163715854 163716150 -18699092 + AluSp SINE Alu 1 295 -18 667 186 4 16 chr6 163716150 163716407 -18698835 + GA-rich Low_complexity Low_complexity 1 254 0 1734 112 15 34 chr6 163717421 163717690 -18697552 + AluSg SINE Alu 37 300 -10 563 292 89 69 chr6 163717694 163718336 -18696906 + L2 LINE L2 2650 3303 -10 258 182 0 0 chr6 163718361 163718416 -18696826 - L1M4 LINE L1 -1455 4691 4637 580 286 48 9 chr6 163718437 163718664 -18696578 - L1M4 LINE L1 -2734 3412 3177 2550 272 91 5 chr6 163718671 163719395 -18695847 - L1MDa LINE L1 -5738 802 58 303 288 0 0 chr6 163719405 163719471 -18695771 - L1MDa LINE L1 -6458 82 17 823 256 38 0 chr6 163719836 163720047 -18695195 + MER20 DNA MER1_type 1 219 0 958 299 33 12 chr6 163720260 163720700 -18694542 + L1ME3A LINE L1 5486 5934 -236 2285 102 0 0 chr6 163720700 163720995 -18694247 + AluSq SINE Alu 1 295 -18 1902 130 63 28 chr6 163721778 163722140 -18693102 + THE1C LTR MaLR 1 375 0 601 305 28 83 chr6 163723052 163723377 -18691865 - L2 LINE L2 -50 3263 2957 * 807 283 27 27 chr6 163723375 163723475 -18691767 - L2 LINE L2 -897 2417 2318 2058 129 40 32 chr6 163723475 163723847 -18691395 - THE1C LTR MaLR 0 375 1 807 283 27 27 chr6 163723847 163724039 -18691203 - L2 LINE L2 -995 2319 2125 551 273 80 25 chr6 163724084 163724457 -18690785 + L1MEc LINE L1 880 1121 -5096 2955 143 2 2 chr6 163725509 163725976 -18689266 - L1PB3 LINE L1 -7 6147 5681 1866 154 136 18 chr6 163726240 163726623 -18688619 + MSTA LTR MaLR 1 428 0 591 297 82 31 chr6 163728761 163729175 -18686067 - HAL1b LINE L1 -702 646 212 218 318 15 0 chr6 163729780 163729846 -18685396 + CT-rich Low_complexity Low_complexity 3 69 0 22 0 0 0 chr6 163731330 163731352 -18683890 + AT_rich Low_complexity Low_complexity 1 22 0 264 275 94 29 chr6 163731852 163732023 -18683219 + LTR37B LTR ERV1 226 407 -61 1731 236 24 24 chr6 163732162 163732620 -18682622 - MLT1C LTR MaLR -7 460 3 1724 275 134 48 chr6 163732620 163733420 -18681822 + L2 LINE L2 1457 2325 -989 245 304 88 82 chr6 163733403 163733574 -18681668 + L2 LINE L2 3140 3311 -2 * 2232 48 34 10 chr6 163733574 163733868 -18681374 - AluY SINE Alu -10 301 1 22 0 0 0 chr6 163735084 163735106 -18680136 + AT_rich Low_complexity Low_complexity 1 22 0 555 354 45 8 chr6 163737298 163737544 -18677698 - MIR SINE MIR 0 262 8 1704 228 43 49 chr6 163738092 163738584 -18676658 + MLT1D LTR MaLR 12 500 -5 186 254 15 75 chr6 163739751 163739818 -18675424 + L2 LINE L2 3251 3313 0 7472 154 40 23 chr6 163739931 163741389 -18673853 - L1MCa LINE L1 -4916 1510 28 2876 233 72 53 chr6 163741398 163741814 -18673428 + L1MC4a LINE L1 6386 6793 -1015 1388 201 22 89 chr6 163741814 163742228 -18673014 + MLT1B LTR MaLR 1 386 -4 2876 233 72 53 chr6 163742228 163742776 -18672466 + L1MC4a LINE L1 6793 7368 -440 280 233 89 0 chr6 163742779 163742869 -18672373 + L1MC4 LINE L1 7920 8017 -25 2098 137 134 8 chr6 163743080 163743460 -18671782 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr6 163743569 163743591 -18671651 + AT_rich Low_complexity Low_complexity 1 22 0 198 71 0 0 chr6 163744994 163745022 -18670220 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1230 248 78 53 chr6 163746270 163746721 -18668521 + MLT1C LTR MaLR 6 467 0 246 308 98 43 chr6 163747052 163747400 -18667842 - L1MC/D LINE L1 -1934 5874 5508 426 237 69 6 chr6 163747685 163747858 -18667384 - HsTC2 DNA Tc2 -2 1896 1713 625 229 186 47 chr6 163747861 163748114 -18667128 - HsTC2 DNA Tc2 -1581 317 30 399 311 117 19 chr6 163748159 163748416 -18666826 + L2 LINE L2 1705 1986 -1328 277 311 67 30 chr6 163748797 163748932 -18666310 + L2 LINE L2 2174 2313 -1001 213 362 39 16 chr6 163748994 163749121 -18666121 + L2 LINE L2 2545 2674 -640 216 0 0 0 chr6 163749355 163749379 -18665863 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 163750050 163750071 -18665171 + AT_rich Low_complexity Low_complexity 1 21 0 3554 188 10 21 chr6 163750190 163750866 -18664376 + L1M2 LINE L1 3 671 -6178 266 167 0 0 chr6 163750938 163750980 -18664262 + U2 snRNA snRNA 1 42 -146 9552 164 79 80 chr6 163750983 163751277 -18663965 - L1MCa LINE L1 -3947 2479 2186 3541 78 2 30 chr6 163751277 163751802 -18663440 - L1PA13 LINE L1 -2 6161 5652 9552 164 79 80 chr6 163751802 163753287 -18661955 - L1MCa LINE L1 -4240 2186 818 183 42 0 0 chr6 163753287 163753311 -18661931 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 9552 164 79 80 chr6 163753311 163754109 -18661133 - L1MCa LINE L1 -5608 818 21 690 133 0 0 chr6 163754248 163754361 -18660881 + (TCCC)n Simple_repeat Simple_repeat 4 116 0 2377 80 3 0 chr6 163754631 163754930 -18660312 - AluSp SINE Alu -13 300 1 300 295 87 34 chr6 163754976 163755125 -18660117 + MIR SINE MIR 3 159 -103 186 352 0 28 chr6 163755112 163755183 -18660059 - MIR SINE MIR 0 262 194 * 507 331 13 7 chr6 163755628 163755782 -18659460 + MIR SINE MIR 1 155 -107 25 51 0 0 chr6 163755800 163755839 -18659403 + AT_rich Low_complexity Low_complexity 1 39 0 306 277 66 51 chr6 163756873 163757010 -18658232 - MIR3 SINE MIR -26 182 44 6139 105 2 2 chr6 163757215 163758775 -18656467 - L1PA11 LINE L1 -1 6173 4619 261 57 0 0 chr6 163759367 163759402 -18655840 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2306 102 0 6 chr6 163761505 163761819 -18653423 + AluSx SINE Alu 1 312 0 777 263 12 0 chr6 163762154 163762314 -18652928 + MER5A DNA MER1_type 28 189 0 28 0 0 0 chr6 163762333 163762361 -18652881 + AT_rich Low_complexity Low_complexity 1 28 0 1716 165 3 7 chr6 163762369 163762660 -18652582 - AluJo SINE Alu -22 290 1 865 306 121 22 chr6 163763439 163763887 -18651355 + L2 LINE L2 1205 1696 -1618 204 125 0 0 chr6 163763910 163763942 -18651300 + (TTC)n Simple_repeat Simple_repeat 2 33 0 1000 208 5 0 chr6 163764739 163764936 -18650306 - AluJo SINE Alu -30 282 85 358 158 0 0 chr6 163764936 163764993 -18650249 - AluSx SINE Alu -52 248 192 1152 78 0 0 chr6 163764994 163765135 -18650107 - AluSx SINE Alu -171 141 1 539 174 0 10 chr6 163765154 163765252 -18649990 - FLAM_A SINE Alu -20 122 26 2284 92 3 0 chr6 163765415 163765720 -18649522 - AluY SINE Alu -5 306 1 8016 37 2 0 chr6 163765738 163767488 -18647754 - L1PA4 LINE L1 0 6155 4406 30 27 0 0 chr6 163768370 163768407 -18646835 + AT_rich Low_complexity Low_complexity 1 37 0 1259 189 18 7 chr6 163768748 163769017 -18646225 + MLT1A1 LTR MaLR 13 360 -5 193 288 76 0 chr6 163770015 163770081 -18645161 - MIR SINE MIR -24 238 168 311 262 14 35 chr6 163770518 163770659 -18644583 - L1M4 LINE L1 -1886 4260 4123 598 287 45 28 chr6 163770659 163770906 -18644336 - HERVL-E LTR ERVL -918 4736 4486 * 2691 310 32 27 chr6 163770902 163772348 -18642894 - HERVL-E LTR ERVL -3932 1832 304 438 278 9 0 chr6 163772611 163772719 -18642523 - MLT2E LTR ERVL -1 627 519 240 167 0 24 chr6 163772768 163772810 -18642432 - MLT2E LTR ERVL -123 505 465 512 271 167 9 chr6 163772884 163773105 -18642137 - MLT2E LTR ERVL -354 274 19 448 279 96 35 chr6 163775511 163775823 -18639419 - L1ME4a LINE L1 -239 5882 5552 966 86 7 0 chr6 163776751 163776891 -18638351 - L1PA15 LINE L1 -9 6156 6016 1091 247 46 75 chr6 163777209 163777813 -18637429 + L1MC5 LINE L1 7327 7913 -48 282 358 28 0 chr6 163778441 163778617 -18636625 - HAL1b LINE L1 -736 612 432 1833 182 18 18 chr6 163779249 163779639 -18635603 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr6 163779685 163779707 -18635535 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 163779963 163779991 -18635251 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr6 163780059 163780087 -18635155 + (TG)n Simple_repeat Simple_repeat 1 28 0 261 125 0 21 chr6 163780113 163780161 -18635081 + MSTC LTR MaLR 1 47 -349 1115 161 89 38 chr6 163780165 163780401 -18634841 + MSTC LTR MaLR 180 427 -1 423 230 168 19 chr6 163780669 163780830 -18634412 - L2 LINE L2 -5 3308 3124 447 262 76 55 chr6 163780831 163781263 -18633979 - L1ME LINE L1 -5150 1055 661 3488 53 2 11 chr6 163781265 163781721 -18633521 - L1PA7 LINE L1 0 6154 5703 1918 39 4 0 chr6 163781721 163781951 -18633291 + L1PA7 LINE L1 5450 5680 -474 367 338 118 42 chr6 163782160 163782491 -18632751 - L1ME LINE L1 -5965 431 76 195 42 0 0 chr6 163783211 163783235 -18632007 + (T)n Simple_repeat Simple_repeat 1 24 0 3534 125 75 72 chr6 163783436 163784213 -18631029 - LTR1 LTR ERV1 0 785 7 902 121 0 27 chr6 163784599 163784748 -18630494 - L1MA6 LINE L1 -2 6298 6154 22 56 0 0 chr6 163784959 163784995 -18630247 + AT_rich Low_complexity Low_complexity 1 36 0 1178 117 19 24 chr6 163786605 163786811 -18628431 + MSTB LTR MaLR 1 205 -221 1023 135 0 0 chr6 163786917 163787087 -18628155 + (TTCTCC)n Simple_repeat Simple_repeat 5 174 0 939 222 14 5 chr6 163787090 163787297 -18627945 + MSTB LTR MaLR 203 411 -15 682 296 46 25 chr6 163787347 163787587 -18627655 + MIR SINE MIR 3 247 -15 339 266 39 45 chr6 163789366 163789520 -18625722 + MIR SINE MIR 71 223 -39 689 306 25 55 chr6 163791384 163791747 -18623495 + HAL1 LINE L1 27 378 -2129 447 248 51 7 chr6 163792308 163792445 -18622797 + HAL1 LINE L1 1116 1258 -1249 3078 305 82 36 chr6 163792752 163794166 -18621076 + L2 LINE L2 17 1495 -1819 403 299 6 43 chr6 163794777 163794941 -18620301 - MIR3 SINE MIR 0 208 51 28 71 0 0 chr6 163795020 163795076 -18620166 + AT_rich Low_complexity Low_complexity 1 56 0 1509 92 23 0 chr6 163795076 163795294 -18619948 - L1PA8 LINE L1 -8 6164 5942 26 30 0 0 chr6 163795562 163795595 -18619647 + AT_rich Low_complexity Low_complexity 1 33 0 2259 102 0 7 chr6 163796751 163797056 -18618186 + AluSx SINE Alu 1 303 -9 583 360 42 0 chr6 163797487 163797701 -18617541 + MIR SINE MIR 2 224 -38 384 333 56 22 chr6 163798628 163798808 -18616434 + MER5A DNA MER1_type 4 189 0 518 293 97 22 chr6 163798881 163799202 -18616040 + L1ME1 LINE L1 39 383 -6013 425 152 0 22 chr6 163799211 163799303 -18615939 + (CAGAGA)n Simple_repeat Simple_repeat 5 94 0 1621 275 17 13 chr6 163799311 163799776 -18615466 + L1ME1 LINE L1 377 843 -5553 * 3112 252 35 16 chr6 163799763 163800989 -18614253 + L1ME1 LINE L1 4930 6173 -62 663 352 63 48 chr6 163801192 163801751 -18613491 + ERVL LTR ERVL 2969 3535 -2229 496 333 42 16 chr6 163802527 163802719 -18612523 + LTR16A LTR ERVL 129 325 -125 239 261 0 0 chr6 163803189 163803254 -18611988 - L1M LINE L1 -759 5419 5355 294 282 195 7 chr6 163803959 163804108 -18611134 + MIR SINE MIR 13 189 -73 2044 108 0 7 chr6 163804356 163804634 -18610608 + AluSx SINE Alu 1 276 -36 342 0 0 0 chr6 163804737 163804775 -18610467 + (TA)n Simple_repeat Simple_repeat 1 38 0 1406 189 36 40 chr6 163804848 163805149 -18610093 - AluSx SINE Alu -12 300 1 749 271 4 67 chr6 163807136 163807376 -18607866 + MIR SINE MIR 12 236 -26 1087 190 122 101 chr6 163807379 163807774 -18607468 + MER57A LTR ERV1 1 403 0 21 57 0 0 chr6 163808008 163808043 -18607199 + AT_rich Low_complexity Low_complexity 1 35 0 326 290 95 48 chr6 163808367 163808619 -18606623 - L1ME LINE L1 -393 5728 5465 476 258 16 77 chr6 163809191 163809385 -18605857 + L1ME1 LINE L1 5980 6164 0 276 217 0 0 chr6 163809457 163809517 -18605725 - L1M4 LINE L1 -2472 3674 3615 1866 164 7 0 chr6 163810008 163810307 -18604935 + AluSx SINE Alu 1 301 -11 287 255 0 53 chr6 163810330 163810424 -18604818 - MIR SINE MIR -6 256 168 24 32 0 0 chr6 163812045 163812076 -18603166 + AT_rich Low_complexity Low_complexity 1 31 0 463 280 84 47 chr6 163812510 163812651 -18602591 - L2 LINE L2 -901 2413 2260 1688 190 7 3 chr6 163812651 163812956 -18602286 + AluJb SINE Alu 3 308 -4 463 280 84 47 chr6 163812956 163813028 -18602214 - L2 LINE L2 -1054 2260 2192 2409 127 8 3 chr6 163813053 163813415 -18601827 + THE1B LTR MaLR 1 364 0 293 165 66 74 chr6 163813415 163813536 -18601706 - MER96B DNA MER1_type? -33 384 265 276 373 18 0 chr6 163813588 163813698 -18601544 - L2 LINE L2 -1116 2198 2087 402 231 39 0 chr6 163813851 163813955 -18601287 - L1ME1 LINE L1 -23 6143 6036 762 309 50 4 chr6 163813956 163814218 -18601024 - HERV16 LTR ERVL -3854 1142 869 1361 291 52 33 chr6 163814295 163814954 -18600288 - HERV16 LTR ERVL -4235 761 91 891 303 118 11 chr6 163815166 163815522 -18599720 - LTR16A LTR ERVL -38 412 19 357 264 26 97 chr6 163815547 163815774 -18599468 - HAL1 LINE L1 -2296 211 1 192 40 0 0 chr6 163816084 163816109 -18599133 + (CA)n Simple_repeat Simple_repeat 1 25 0 3753 151 20 5 chr6 163817063 163817720 -18597522 - L1PA16 LINE L1 0 6166 5500 2984 70 68 0 chr6 163817720 163818117 -18597125 + THE1B-int LTR MaLR 1157 1580 0 2010 117 61 29 chr6 163818118 163818460 -18596782 + THE1B LTR MaLR 2 354 -10 5465 207 58 16 chr6 163818460 163819929 -18595313 - L1PA16 LINE L1 -660 5506 3985 319 343 24 41 chr6 163820134 163820303 -18594939 + L2 LINE L2 3147 3312 -1 252 278 191 19 chr6 163820662 163820824 -18594418 - MIR SINE MIR -2 260 71 23 0 0 0 chr6 163821077 163821100 -18594142 + AT_rich Low_complexity Low_complexity 1 23 0 228 174 0 0 chr6 163821475 163821521 -18593721 + LTR66 LTR ERVL 394 439 -171 427 271 62 57 chr6 163821555 163821747 -18593495 - L2 LINE L2 0 3313 3121 557 208 64 24 chr6 163821782 163821907 -18593335 + FLAM_A SINE Alu 2 131 -2 419 378 46 4 chr6 163822084 163822322 -18592920 - L2 LINE L2 -416 2898 2651 339 65 0 0 chr6 163822603 163822649 -18592593 + (TC)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr6 163823057 163823078 -18592164 + AT_rich Low_complexity Low_complexity 1 21 0 1789 166 0 10 chr6 163823802 163824126 -18591116 + AluJb SINE Alu 1 321 0 451 262 160 46 chr6 163824628 163825021 -18590221 - L1M4 LINE L1 -2162 3984 3547 1037 163 29 67 chr6 163825726 163825965 -18589277 - L1MA10 LINE L1 -45 6289 6060 1830 208 19 48 chr6 163826196 163826677 -18588565 - MLT1C LTR MaLR 0 467 1 275 267 27 13 chr6 163827453 163827528 -18587714 - L1MEd LINE L1 -4872 1247 1172 272 283 50 61 chr6 163827580 163827941 -18587301 - L1MEd LINE L1 -4962 1157 801 7511 29 1 3 chr6 163828267 163829718 -18585524 + L1PA3 LINE L1 4705 6153 -2 323 298 78 78 chr6 163829733 163829951 -18585291 - L1MEd LINE L1 -5634 485 268 1608 162 62 59 chr6 163829971 163830360 -18584882 + MLT1B LTR MaLR 1 390 0 1674 148 16 8 chr6 163830816 163831073 -18584169 + AluSx SINE Alu 41 299 -13 26 50 0 0 chr6 163831612 163831652 -18583590 + AT_rich Low_complexity Low_complexity 1 40 0 2437 244 11 11 chr6 163832767 163833406 -18581836 - L1MA10 LINE L1 0 6334 5696 1912 148 8 67 chr6 163833425 163833784 -18581458 - MER2 DNA MER2_type -7 338 1 4711 112 10 11 chr6 163833791 163834507 -18580735 + HSMAR2 DNA Mariner 2 716 -586 2054 161 12 9 chr6 163834514 163834856 -18580386 + MER61A LTR ERV1 1 343 0 2294 186 112 15 chr6 163834856 163835491 -18579751 + MER61A-int LTR ERV1 1 777 -4440 286 149 0 0 chr6 163835484 163835531 -18579711 + MER61A-int LTR ERV1 1320 1366 -3851 * 399 21 0 0 chr6 163835547 163835595 -18579647 + (TG)n Simple_repeat Simple_repeat 1 48 0 4395 103 26 30 chr6 163835595 163836323 -18578919 + MER61A-int LTR ERV1 1462 2186 -3031 * 17222 85 43 42 chr6 163836317 163838519 -18576723 + MER61A-int LTR ERV1 2591 4799 -418 2281 123 0 0 chr6 163838519 163838829 -18576413 + AluSg SINE Alu 1 310 0 17222 85 43 42 chr6 163838829 163839249 -18575993 + MER61A-int LTR ERV1 4799 5217 0 1582 192 42 12 chr6 163839249 163839582 -18575660 + MER61A LTR ERV1 1 343 0 3485 106 29 49 chr6 163839584 163839798 -18575444 + HSMAR2 DNA Mariner 722 939 -363 1953 150 7 0 chr6 163839798 163840105 -18575137 - AluSx SINE Alu -3 309 1 3485 106 29 49 chr6 163840105 163840483 -18574759 + HSMAR2 DNA Mariner 939 1302 0 190 296 102 43 chr6 163843052 163843098 -18572144 - L2 LINE L2 -978 2336 2294 3248 158 18 34 chr6 163843098 163843713 -18571529 + MER6A DNA MER2_type 1 605 0 190 296 102 43 chr6 163843713 163843852 -18571390 - L2 LINE L2 -1020 2294 2140 892 240 84 0 chr6 163844230 163844455 -18570787 - MLT1H LTR MaLR -305 244 1 270 364 62 19 chr6 163844504 163844666 -18570576 - MER5A DNA MER1_type -1 188 20 427 179 0 13 chr6 163844785 163844863 -18570379 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2822 228 48 31 chr6 163844868 163845702 -18569540 - L1ME1 LINE L1 -82 6153 5305 439 141 0 0 chr6 163845705 163845776 -18569466 - AluS SINE Alu -15 295 225 920 212 54 121 chr6 163845802 163846039 -18569203 - L1ME1 LINE L1 -987 5228 5033 775 239 97 58 chr6 163846039 163846399 -18568843 + MLT1A2 LTR MaLR 1 374 0 920 212 54 121 chr6 163846399 163846609 -18568633 - L1ME1 LINE L1 -1182 5033 4811 242 302 38 6 chr6 163846601 163846760 -18568482 - L1ME1 LINE L1 -2173 4042 3879 * 1737 222 107 28 chr6 163848651 163849183 -18566059 - L1ME1 LINE L1 -5788 608 35 809 200 31 55 chr6 163849183 163849438 -18565804 - L1MDa LINE L1 -3254 3286 3038 1627 182 154 0 chr6 163849441 163849798 -18565444 - MLT2D LTR ERVL -1 413 2 1018 177 4 67 chr6 163849798 163850133 -18565109 - MER50 LTR ERV1 0 734 449 * 1266 124 60 14 chr6 163850118 163850335 -18564907 - MER50 LTR ERV1 -507 227 1 835 254 156 15 chr6 163850338 163850953 -18564289 - L1MDa LINE L1 -3502 3038 2351 12613 157 22 17 chr6 163851025 163853235 -18562007 + L1PA12 LINE L1 1085 3313 -4271 2014 134 20 0 chr6 163853235 163853540 -18561702 + AluSx SINE Alu 1 311 -1 12613 157 22 17 chr6 163853540 163853882 -18561360 + L1PA12 LINE L1 3313 3652 -3932 2131 134 0 10 chr6 163853882 163854195 -18561047 + AluSx SINE Alu 3 312 0 397 308 84 30 chr6 163855661 163855924 -18559318 + L1MEc LINE L1 851 1127 -5436 287 171 57 0 chr6 163855930 163856018 -18559224 + (TA)n Simple_repeat Simple_repeat 2 94 0 954 291 100 42 chr6 163856018 163856866 -18558376 + L1MEc LINE L1 1065 2118 -4445 1157 269 55 56 chr6 163857038 163857357 -18557885 + L1MEc LINE L1 2340 2658 -3724 1815 159 20 0 chr6 163857357 163857652 -18557590 + AluJb SINE Alu 1 301 -11 1157 269 55 56 chr6 163857652 163858166 -18557076 + L1MEc LINE L1 2658 3127 -3255 227 333 9 29 chr6 163858170 163858275 -18556967 - L1ME LINE L1 -5948 122 20 483 146 11 5 chr6 163858275 163858348 -18556894 + L1MA7 LINE L1 6180 6251 -61 279 0 0 0 chr6 163858348 163858379 -18556863 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2157 109 3 3 chr6 163858387 163858680 -18556562 - AluSp SINE Alu -20 293 1 483 146 11 5 chr6 163858680 163858699 -18556543 + L1MA7 LINE L1 6257 6287 -25 190 241 126 69 chr6 163860535 163860622 -18554620 + L2 LINE L2 3168 3259 -13 186 43 0 0 chr6 163860622 163860645 -18554597 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 1826 315 57 31 chr6 163860702 163861647 -18553595 + HERV16 LTR ERVL 611 1580 -3416 2334 105 0 3 chr6 163862345 163862659 -18552583 - AluSq SINE Alu 0 313 1 2020 145 0 13 chr6 163862989 163863300 -18551942 - AluSx SINE Alu -5 307 1 373 345 67 30 chr6 163863309 163863474 -18551768 - MER5A DNA MER1_type -11 178 8 269 252 14 122 chr6 163864763 163864865 -18550377 - L2 LINE L2 -5 3308 3225 2338 101 0 0 chr6 163864865 163865162 -18550080 + AluSc SINE Alu 1 297 -12 269 252 14 122 chr6 163865162 163865206 -18550036 - L2 LINE L2 -88 3225 3178 333 0 0 0 chr6 163865513 163865550 -18549692 + (TG)n Simple_repeat Simple_repeat 1 37 0 184 318 237 25 chr6 163866177 163866413 -18548829 - L2 LINE L2 -418 2896 2611 824 158 0 0 chr6 163866436 163866563 -18548679 + AluJb SINE Alu 179 305 -7 473 83 0 14 chr6 163866576 163866648 -18548594 + (GAAAA)n Simple_repeat Simple_repeat 5 75 0 1102 150 11 18 chr6 163866678 163866878 -18548364 + MLT1B LTR MaLR 192 497 -8 212 326 30 91 chr6 163866997 163867129 -18548113 + L2 LINE L2 3137 3260 -12 238 341 134 28 chr6 163867160 163867339 -18547903 - L2 LINE L2 -1953 1361 1164 487 303 69 6 chr6 163867760 163867935 -18547307 - MIR SINE MIR -69 193 8 1854 178 0 0 chr6 163868167 163868470 -18546772 - AluJb SINE Alu -8 304 2 595 219 34 89 chr6 163868656 163868806 -18546436 + L1MDa LINE L1 2484 2609 -3931 2003 137 13 0 chr6 163868806 163869119 -18546123 + L1PA16 LINE L1 5836 6152 -14 595 219 34 89 chr6 163869119 163869265 -18545977 + L1MDa LINE L1 2609 2761 -3779 2812 247 49 31 chr6 163869316 163870398 -18544844 + L1M4 LINE L1 3978 5078 -1068 240 374 24 0 chr6 163871718 163871841 -18543401 + MIR SINE MIR 28 153 -109 248 301 65 0 chr6 163871901 163871994 -18543248 + MER94 DNA DNA 1 99 -35 2249 302 80 49 chr6 163872019 163872361 -18542881 - L1MCc LINE L1 -5013 1410 1080 2040 127 30 46 chr6 163872361 163872731 -18542511 + THE1B LTR MaLR 1 364 0 2249 302 80 49 chr6 163872731 163872744 -18542498 - L1MCc LINE L1 -5343 1080 1069 2052 117 20 10 chr6 163872744 163873042 -18542200 - AluSx SINE Alu -9 303 3 2249 302 80 49 chr6 163873042 163873428 -18541814 - L1MCc LINE L1 -5354 1069 696 2241 148 22 0 chr6 163873428 163873785 -18541457 + MLT1A1 LTR MaLR 1 365 0 2249 302 80 49 chr6 163873785 163874329 -18540913 - L1MCc LINE L1 -5727 696 83 674 284 132 36 chr6 163874500 163875310 -18539932 - L1MDa LINE L1 -4440 1640 846 886 288 65 30 chr6 163875315 163875746 -18539496 - L1MDa LINE L1 -5258 812 367 456 305 57 36 chr6 163875938 163876272 -18538970 - L1MC4 LINE L1 -13 8029 7689 25 51 0 0 chr6 163876739 163876778 -18538464 + AT_rich Low_complexity Low_complexity 1 39 0 45 19 0 0 chr6 163876801 163876853 -18538389 + AT_rich Low_complexity Low_complexity 1 52 0 349 174 14 0 chr6 163876853 163876922 -18538320 - L1MA5A LINE L1 -21 6276 6207 1170 52 35 0 chr6 163877723 163877777 -18537465 + (TTTC)n Simple_repeat Simple_repeat 1 233 0 1170 52 35 0 chr6 163877777 163877949 -18537293 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 201 147 0 0 chr6 163878031 163878065 -18537177 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 199 0 0 0 chr6 163878073 163878095 -18537147 + (TTTA)n Simple_repeat Simple_repeat 3 168 0 9026 26 1 1 chr6 163878095 163879927 -18535315 - L1PA3 LINE L1 -7 6148 4311 1774 174 27 0 chr6 163880101 163880399 -18534843 + AluJb SINE Alu 1 306 -6 263 333 12 0 chr6 163880660 163880744 -18534498 - L2 LINE L2 -3 3310 3226 276 77 0 0 chr6 163881580 163881619 -18533623 + (TG)n Simple_repeat Simple_repeat 2 40 0 2675 216 24 47 chr6 163881721 163882388 -18532854 - MER82 DNA MER2_type 0 653 2 195 372 93 17 chr6 163882498 163882670 -18532572 - L2 LINE L2 -218 3054 2870 297 346 0 0 chr6 163883501 163883605 -18531637 - MIR3 SINE MIR -7 201 98 2414 88 0 3 chr6 163885759 163886065 -18529177 + AluSc SINE Alu 1 305 -4 3022 156 10 39 chr6 163886277 163886868 -18528374 - MER4B LTR ERV1 -36 574 1 2999 180 61 26 chr6 163886995 163887695 -18527547 - LTR8A LTR ERV1 0 727 3 343 311 97 20 chr6 163887798 163888046 -18527196 + L2 LINE L2 2853 3119 -194 239 67 0 0 chr6 163888691 163888720 -18526522 + MER57A LTR ERV1 1 29 -374 1008 147 25 17 chr6 163888720 163888903 -18526339 + THE1C LTR MaLR 1 162 -213 741 110 59 0 chr6 163888917 163889035 -18526207 - LTR54B LTR ERV1 -371 127 3 10130 121 14 8 chr6 163889035 163890378 -18524864 - MER57A-int LTR ERV1 -391 7146 5790 2382 67 7 7 chr6 163890378 163890678 -18524564 - AluY SINE Alu -11 300 1 10130 121 14 8 chr6 163890678 163890860 -18524382 - MER57A-int LTR ERV1 -1747 5790 5611 1696 125 72 17 chr6 163890860 163891277 -18523965 - MER4A LTR ERV1 -2 662 100 189 0 0 0 chr6 163891277 163891298 -18523944 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1696 125 72 17 chr6 163891298 163891404 -18523838 - MER4A LTR ERV1 -564 100 1 4472 130 38 3 chr6 163891405 163892142 -18523100 - MER57A-int LTR ERV1 -1922 5615 4853 1261 206 73 93 chr6 163892146 163892747 -18522495 - MER57A-int LTR ERV1 -2193 4138 3550 4002 108 0 2 chr6 163892747 163893302 -18521940 - MER41A LTR ERV1 0 554 1 9359 118 44 43 chr6 163893302 163895525 -18519717 - MER41A-int LTR ERV1 -2 5944 3725 297 154 0 0 chr6 163895525 163895577 -18519665 - AluSc SINE Alu -5 294 243 9359 118 44 43 chr6 163895577 163896500 -18518742 - MER41A-int LTR ERV1 -2221 3725 1075 4384 131 40 14 chr6 163896479 163897196 -18518046 - MER41A-int LTR ERV1 -5301 645 1 * 3921 100 9 0 chr6 163897196 163897745 -18517497 - MER41A LTR ERV1 0 554 1 505 176 29 29 chr6 163897750 163897920 -18517322 - MER57A-int LTR ERV1 -3028 2095 1926 350 91 0 0 chr6 163898011 163898066 -18517176 - MER57A-int LTR ERV1 -3870 2888 2834 362 225 0 11 chr6 163898175 163898264 -18516978 - MER57A-int LTR ERV1 -2890 3441 3354 505 221 0 0 chr6 163898312 163898407 -18516835 - MER57A-int LTR ERV1 -2990 3341 3247 427 221 78 60 chr6 163898486 163898703 -18516539 - MER57A-int LTR ERV1 -4545 2053 1833 400 129 0 0 chr6 163898866 163898928 -18516314 - MER34C LTR ERV1 -369 216 155 279 279 93 36 chr6 163898928 163899068 -18516174 - MER57A-int LTR ERV1 -4135 988 841 1656 137 23 30 chr6 163899171 163899470 -18515772 - MER57A-int LTR ERV1 -6695 842 546 632 122 0 10 chr6 163899472 163899570 -18515672 + MER4A LTR ERV1 1 97 -567 1929 141 3 27 chr6 163899571 163899925 -18515317 + MER4A LTR ERV1 261 664 0 2834 155 7 4 chr6 163899925 163900383 -18514859 - MER57A-int LTR ERV1 -6990 547 89 1141 70 0 0 chr6 163900386 163900529 -18514713 - MER4E LTR ERV1 0 766 624 4526 168 24 107 chr6 163900634 163901399 -18513843 - L1MC3 LINE L1 -736 7049 6331 514 75 25 0 chr6 163901399 163901479 -18513763 + AluJ/FRAM SINE Alu 231 312 0 4526 168 24 107 chr6 163901479 163901822 -18513420 - L1MC3 LINE L1 -1454 6331 5961 4203 83 14 48 chr6 163901928 163902122 -18513120 - MER4E LTR ERV1 -147 619 420 2212 99 7 3 chr6 163902122 163902416 -18512826 + AluSq SINE Alu 1 295 -18 4203 83 14 48 chr6 163902416 163902860 -18512382 - MER4E LTR ERV1 -346 420 3 437 173 13 0 chr6 163902868 163902943 -18512299 - MER57A-int LTR ERV1 -7461 76 1 2435 126 25 13 chr6 163902943 163903341 -18511901 - MER57A LTR ERV1 0 403 1 219 290 90 20 chr6 163903352 163903452 -18511790 - MIR SINE MIR -140 122 16 661 81 0 0 chr6 163903592 163903678 -18511564 + 5S rRNA rRNA 4 89 -32 266 282 83 26 chr6 163903749 163903905 -18511337 - L1M4 LINE L1 -2309 3837 3673 315 215 0 0 chr6 163904777 163904842 -18510400 - L1MC3 LINE L1 -2396 5599 5535 2683 146 66 14 chr6 163904867 163904990 -18510252 - MER41E LTR ERV1 0 512 397 2239 97 3 3 chr6 163904990 163905298 -18509944 + AluSg SINE Alu 1 308 -2 2683 146 66 14 chr6 163905298 163905661 -18509581 - MER41E LTR ERV1 -115 397 1 757 248 45 7 chr6 163905741 163906095 -18509147 - L1MC3 LINE L1 -676 5486 5122 366 259 157 30 chr6 163906097 163906294 -18508948 + MLT2C1 LTR ERVL 4 225 -172 216 163 0 0 chr6 163906300 163906343 -18508899 + GA-rich Low_complexity Low_complexity 1 43 0 367 213 93 46 chr6 163906420 163906490 -18508752 + MLT2F LTR ERVL 540 618 -45 446 0 19 0 chr6 163906490 163906544 -18508698 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 367 213 93 46 chr6 163906544 163906581 -18508661 + MLT2F LTR ERVL 618 652 -11 1064 284 64 4 chr6 163906603 163907071 -18508171 - L1MC3 LINE L1 -1050 5096 4601 32 43 0 0 chr6 163907081 163907127 -18508115 + AT_rich Low_complexity Low_complexity 1 46 0 478 239 68 8 chr6 163907710 163907827 -18507415 + L2 LINE L2 3189 3312 -1 30 69 0 0 chr6 163907858 163907916 -18507326 + AT_rich Low_complexity Low_complexity 1 58 0 403 270 4 46 chr6 163907955 163908090 -18507152 + MLT1J2 LTR MaLR 37 165 -244 504 200 70 0 chr6 163908846 163908961 -18506281 + MLT1J2 LTR MaLR 4 126 -324 506 253 90 24 chr6 163909000 163909166 -18506076 + MLT1J1 LTR MaLR 204 380 -66 498 313 152 35 chr6 163909251 163909575 -18505667 - LTR16C LTR ERVL 0 491 104 1588 176 98 41 chr6 163909575 163909944 -18505298 + MLT1B LTR MaLR 1 390 0 498 313 152 35 chr6 163909944 163910047 -18505195 - LTR16C LTR ERVL -387 104 14 279 315 55 34 chr6 163910442 163910588 -18504654 - ERVL LTR ERVL -647 5117 4969 332 271 47 12 chr6 163910668 163910753 -18504489 - ERVL LTR ERVL -826 4828 4741 1761 192 42 23 chr6 163910754 163911205 -18504037 - MER89 LTR ERV1 0 559 1 26 0 0 0 chr6 163911329 163911355 -18503887 + AT_rich Low_complexity Low_complexity 1 26 0 491 270 18 12 chr6 163911917 163912080 -18503162 - LTR16C LTR ERVL 0 491 328 711 218 191 36 chr6 163912851 163913296 -18501946 - L1ME2 LINE L1 -9 6155 5656 589 234 16 60 chr6 163913297 163913452 -18501790 - L1ME2 LINE L1 -568 5596 5449 2220 151 25 57 chr6 163913452 163913890 -18501352 + MSTB LTR MaLR 1 424 -2 589 234 16 60 chr6 163913890 163913918 -18501324 - L1ME2 LINE L1 -715 5449 5421 216 0 0 0 chr6 163913970 163913994 -18501248 + (TG)n Simple_repeat Simple_repeat 2 25 0 276 228 18 0 chr6 163914277 163914334 -18500908 + MER94 DNA DNA 1 58 -76 30 83 0 0 chr6 163914411 163914483 -18500759 + AT_rich Low_complexity Low_complexity 1 72 0 658 272 90 6 chr6 163914547 163914882 -18500360 - MER114 LTR ERV -176 472 110 602 256 0 0 chr6 163915315 163915436 -18499806 - FLAM_A SINE Alu -12 121 1 2010 148 128 13 chr6 163915475 163915859 -18499383 + MSTA LTR MaLR 1 428 0 253 274 52 22 chr6 163915874 163916009 -18499233 + L1M4 LINE L1 4534 4672 -1474 241 274 0 0 chr6 163916040 163916113 -18499129 + L1M4 LINE L1 4760 4832 -1314 1936 230 49 5 chr6 163916846 163917293 -18497949 - MLT1C LTR MaLR 0 467 1 2009 124 0 3 chr6 163917336 163917619 -18497623 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr6 163917623 163917646 -18497596 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 208 180 20 0 chr6 163917891 163917941 -18497301 + A-rich Low_complexity Low_complexity 2 52 0 404 330 71 9 chr6 163918059 163918283 -18496959 + MER102a DNA MER1_type 88 325 -5 229 130 130 37 chr6 163919685 163919739 -18495503 + MLT1I LTR MaLR 226 284 -125 261 0 0 0 chr6 163920285 163920314 -18494928 + (T)n Simple_repeat Simple_repeat 1 29 0 2222 73 7 7 chr6 163921433 163921719 -18493523 + AluSq SINE Alu 23 308 -5 207 100 0 0 chr6 163923583 163923613 -18491629 + (T)n Simple_repeat Simple_repeat 1 30 0 1916 185 21 16 chr6 163924592 163924965 -18490277 - LTR62 LTR ERVK -2 717 343 539 143 33 0 chr6 163925014 163925105 -18490137 - LTR62 LTR ERVK -625 94 1 1652 122 159 90 chr6 163925163 163925541 -18489701 - MER4A LTR ERV1 0 664 261 288 67 22 22 chr6 163925541 163925586 -18489656 - MER4A LTR ERV1 -566 98 54 15782 97 62 26 chr6 163925619 163925678 -18489564 - MER4A-int LTR ERV1 -2 6596 6541 2816 73 92 5 chr6 163925678 163926090 -18489152 - LTR7 LTR ERV1 -2 448 1 15782 97 62 26 chr6 163926090 163927077 -18488165 - MER4A-int LTR ERV1 -57 6541 5590 2242 114 3 0 chr6 163927077 163927384 -18487858 - AluSq SINE Alu -5 308 1 15782 97 62 26 chr6 163927384 163928355 -18486887 - MER4A-int LTR ERV1 -1008 5590 4655 1990 89 16 0 chr6 163928355 163928612 -18486630 + AluY SINE Alu 39 299 -12 15782 97 62 26 chr6 163928612 163929743 -18485499 - MER4A-int LTR ERV1 -1943 4655 2737 1218 141 132 0 chr6 163929750 163929970 -18485272 + LTR8 LTR ERV1 9 257 -434 4198 94 58 3 chr6 163929970 163930627 -18484615 - MER4A-int LTR ERV1 -4103 2495 1803 1482 117 8 115 chr6 163930624 163931023 -18484219 - MER4A-int LTR ERV1 -4210 1268 503 * 309 120 20 0 chr6 163931021 163931071 -18484171 - MER4A-int LTR ERV1 -5712 886 836 * 2551 125 72 16 chr6 163931715 163932162 -18483080 - MER4A-int LTR ERV1 -6126 472 1 1748 125 5 84 chr6 163932165 163932540 -18482702 - MER4A LTR ERV1 0 664 261 261 127 380 14 chr6 163932542 163932613 -18482629 - MER4A LTR ERV1 -567 97 1 302 276 49 41 chr6 163933149 163933272 -18481970 + L1M4 LINE L1 5270 5393 -753 277 196 29 108 chr6 163933316 163933418 -18481824 + L1M4 LINE L1 4756 4849 -1297 255 289 31 10 chr6 163933426 163933523 -18481719 + L1M4 LINE L1 5058 5156 -990 1888 187 68 34 chr6 163933746 163934190 -18481052 + LTR2B LTR ERV1 32 490 0 308 264 0 14 chr6 163934441 163934513 -18480729 - MER76 LTR ERV 0 688 618 2149 52 0 0 chr6 163934844 163935096 -18480146 + AluY SINE Alu 1 252 -59 228 299 9 47 chr6 163935104 163935211 -18480031 - L2 LINE L2 -1341 1973 1871 21 57 0 0 chr6 163935268 163935303 -18479939 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 163935594 163935629 -18479613 + AT_rich Low_complexity Low_complexity 1 35 0 12644 239 24 31 chr6 163935891 163935979 -18479263 - L1PA16 LINE L1 -9 7595 7508 1717 147 75 36 chr6 163935979 163936340 -18478902 + THE1C LTR MaLR 1 375 0 12644 239 24 31 chr6 163936340 163937139 -18478103 - L1PA16 LINE L1 -96 7508 6705 1383 161 108 69 chr6 163937139 163937337 -18477905 - THE1C LTR MaLR 0 375 155 2027 117 3 20 chr6 163937337 163937637 -18477605 - AluSx SINE Alu -15 297 3 1383 161 108 69 chr6 163937637 163937799 -18477443 - THE1C LTR MaLR -220 155 1 12644 239 24 31 chr6 163937799 163942317 -18472925 - L1PA16 LINE L1 -899 6705 2185 216 0 0 0 chr6 163942424 163942448 -18472794 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 293 267 0 0 chr6 163942587 163942662 -18472580 - L1PA16 LINE L1 -5402 2179 2105 681 340 131 32 chr6 163942836 163943369 -18471873 - L1PA16 LINE L1 -6200 1374 789 24 53 0 0 chr6 163943385 163943423 -18471819 + AT_rich Low_complexity Low_complexity 1 38 0 778 244 44 88 chr6 163944494 163944893 -18470349 - MLT2C1 LTR ERVL 0 663 18 1583 193 20 37 chr6 163945541 163945889 -18469353 + MER2 DNA MER2_type 2 343 -1 269 132 0 19 chr6 163945901 163945954 -18469288 + (TG)n Simple_repeat Simple_repeat 2 53 0 184 203 63 63 chr6 163946289 163946368 -18468874 + L2 LINE L2 3128 3206 -107 572 269 103 0 chr6 163946424 163946658 -18468584 - MIR SINE MIR -3 259 2 1117 148 82 29 chr6 163946826 163947069 -18468173 + L1MB2 LINE L1 5914 6169 -2 495 323 103 26 chr6 163947168 163947400 -18467842 + L2 LINE L2 2708 2957 -357 375 351 84 0 chr6 163947571 163947702 -18467540 - MLT1J LTR MaLR -369 142 1 311 293 28 9 chr6 163948425 163948531 -18466711 - L1MC4 LINE L1 -1321 6790 6683 37 0 0 0 chr6 163948531 163948568 -18466674 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr6 163949050 163949091 -18466151 + AT_rich Low_complexity Low_complexity 1 41 0 252 249 132 42 chr6 163949882 163950071 -18465171 - L1MC4 LINE L1 -2331 5546 5341 382 300 105 45 chr6 163950166 163950802 -18464440 - L1MC4 LINE L1 -1308 4907 4223 2573 64 0 0 chr6 163950802 163951113 -18464129 - AluY SINE Alu 0 311 1 382 300 105 45 chr6 163951113 163951183 -18464059 - L1MC4 LINE L1 -1992 4223 4159 2069 283 55 5 chr6 163951407 163952124 -18463118 + L1ME1 LINE L1 5363 6109 -57 737 250 71 27 chr6 163952143 163952439 -18462803 - L1M4 LINE L1 -830 5316 5008 656 140 0 0 chr6 163952439 163952539 -18462703 - LTR12 LTR ERV1 0 714 615 357 246 34 17 chr6 163952541 163952659 -18462583 - LTR30 LTR ERV1 -79 643 524 954 129 31 102 chr6 163952746 163952976 -18462266 - LTR12 LTR ERV1 -480 1683 48 230 231 0 0 chr6 163952991 163953043 -18462199 - LTR30 LTR ERV1 -670 52 1 1493 239 48 49 chr6 163953043 163953696 -18461546 - L1M4 LINE L1 -1135 5011 4360 905 290 136 35 chr6 163953679 163954636 -18460606 - L1MC4 LINE L1 -4130 2266 1407 * 2144 82 0 3 chr6 163954636 163954955 -18460287 - AluY SINE Alu 0 318 1 905 290 136 35 chr6 163954955 163955983 -18459259 - L1MC4 LINE L1 -4989 1407 57 614 174 0 9 chr6 163956351 163956460 -18458782 - MLT1A1 LTR MaLR 0 365 258 * 1131 205 7 103 chr6 163956459 163956908 -18458334 - MLT1A1 LTR MaLR -35 393 1 350 283 0 0 chr6 163956937 163957029 -18458213 + MIR SINE MIR 82 173 -89 1694 281 249 52 chr6 163957728 163958792 -18456450 - L2 LINE L2 -1297 2017 629 843 205 12 12 chr6 163958792 163958953 -18456289 + FRAM SINE Alu 1 161 -5 1694 281 249 52 chr6 163958953 163959240 -18456002 - L2 LINE L2 -2685 629 400 213 39 0 0 chr6 163959275 163959301 -18455941 + (CA)n Simple_repeat Simple_repeat 1 26 0 461 323 44 48 chr6 163959308 163959624 -18455618 + L1M4 LINE L1 2729 3043 -3103 1520 197 84 0 chr6 163959862 163960182 -18455060 - MER7A DNA MER2_type -1 345 1 2013 141 3 0 chr6 163960196 163960494 -18454748 - AluSx SINE Alu -13 299 1 1778 141 7 46 chr6 163962093 163962399 -18452843 + AluSx SINE Alu 1 294 -18 481 96 0 0 chr6 163962400 163962473 -18452769 + AluSp/q SINE Alu 236 308 -5 2056 126 0 3 chr6 163963716 163964017 -18451225 - AluSc SINE Alu -9 300 1 2032 132 24 12 chr6 163965133 163965466 -18449776 - LTR24B LTR ERV1 -239 337 1 1732 190 83 16 chr6 163965467 163965485 -18449757 - MER34C LTR ERV1 -186 399 384 1591 164 19 99 chr6 163965485 163965857 -18449385 + MER2 DNA MER2_type 3 344 0 1732 190 83 16 chr6 163965857 163966212 -18449030 - MER34C LTR ERV1 -201 384 1 358 314 42 0 chr6 163966217 163966335 -18448907 + MIR SINE MIR 112 234 -28 4341 160 14 0 chr6 163966337 163967049 -18448193 + MER72 LTR ERV1 1 722 0 2152 185 89 46 chr6 163967462 163967845 -18447397 + MER34C LTR ERV1 1 417 -168 1894 196 55 24 chr6 163967845 163968264 -18446978 + Tigger2a DNA MER2_type 3 434 0 2152 185 89 46 chr6 163968264 163968441 -18446801 + MER34C LTR ERV1 417 585 0 22 88 0 0 chr6 163969406 163969463 -18445779 + AT_rich Low_complexity Low_complexity 1 57 0 2049 126 13 0 chr6 163969948 163970249 -18444993 + AluSc SINE Alu 1 305 -4 357 238 139 0 chr6 163971694 163971795 -18443447 - MLT1E2-int LTR MaLR -320 1051 937 485 306 20 7 chr6 163971924 163972071 -18443171 - MLT1E2-int LTR MaLR -518 853 705 1598 250 63 39 chr6 163972263 163972835 -18442407 - MLT1E2-int LTR MaLR -771 600 15 1618 236 172 40 chr6 163972842 163973393 -18441849 - MLT1E2 LTR MaLR 0 626 3 499 308 86 40 chr6 163973399 163973822 -18441420 + L1M4 LINE L1 3631 4090 -2056 1779 128 57 7 chr6 163973822 163974103 -18441139 + AluSc SINE Alu 1 295 -14 499 308 86 40 chr6 163974103 163974261 -18440981 + L1M4 LINE L1 4090 4239 -1907 323 268 113 33 chr6 163974927 163975384 -18439858 + L1M2 LINE L1 4980 5460 -749 297 0 0 0 chr6 163976719 163976752 -18438490 + (TG)n Simple_repeat Simple_repeat 2 34 0 583 166 18 130 chr6 163976817 163977040 -18438202 - L1MCa LINE L1 -4065 2361 2164 584 263 78 61 chr6 163977103 163977901 -18437341 - L1MC4 LINE L1 -743 5403 4620 1901 140 0 11 chr6 163977901 163978206 -18437036 - AluY SINE Alu 0 302 1 584 263 78 61 chr6 163978206 163979422 -18435820 - L1MC4 LINE L1 -1526 4620 4579 1280 56 0 0 chr6 163979422 163979582 -18435660 - L1PA3 LINE L1 -1 6154 5995 584 263 78 61 chr6 163979582 163979785 -18435457 - L1MC4 LINE L1 -1567 4579 4381 13533 159 25 2 chr6 163979907 163982182 -18433060 + Tigger1 DNA MER2_type 1 2328 -90 4633 193 29 3 chr6 163982182 163983628 -18431614 + L1P4 LINE L1 4186 5670 -496 2353 97 0 6 chr6 163983628 163983968 -18431274 + AluSg SINE Alu 1 310 0 4633 193 29 3 chr6 163983968 163984045 -18431197 + L1P4 LINE L1 5670 5744 -422 236 287 133 7 chr6 163984066 163984209 -18431033 + L1MDa LINE L1 1816 1976 -4564 31 68 0 0 chr6 163984707 163984766 -18430476 + AT_rich Low_complexity Low_complexity 1 59 0 272 330 28 50 chr6 163984937 163985150 -18430092 + L1MDa LINE L1 3808 4016 -2524 1482 79 53 0 chr6 163985150 163985361 -18429881 - AluY SINE Alu 0 302 82 272 330 28 50 chr6 163985361 163985428 -18429814 + L1MDa LINE L1 4016 4083 -2457 682 310 123 43 chr6 163985470 163986274 -18428968 + L1MDa LINE L1 4152 5019 -1521 337 307 94 0 chr6 163986294 163986421 -18428821 - L1ME2 LINE L1 -301 5863 5725 473 277 76 4 chr6 163986431 163986669 -18428573 - L1ME2 LINE L1 -870 5276 5022 374 319 69 23 chr6 163986707 163986923 -18428319 - L1ME2 LINE L1 -2031 4115 3890 1817 227 84 58 chr6 163989059 163989627 -18425615 + L1ME1 LINE L1 15 597 -5943 647 266 19 39 chr6 163989679 163989886 -18425356 - MLT1C LTR MaLR -262 205 3 241 307 45 0 chr6 163989887 163989975 -18425267 + L1ME1 LINE L1 352 443 -5980 2133 120 0 10 chr6 163990096 163990396 -18424846 + AluSq SINE Alu 6 302 -11 1043 200 73 61 chr6 163990427 163990867 -18424375 + L1ME1 LINE L1 4703 5147 -1393 234 138 69 43 chr6 163990873 163990989 -18424253 + (TA)n Simple_repeat Simple_repeat 2 120 0 2133 253 54 20 chr6 163991008 163992361 -18422881 + L1ME1 LINE L1 5146 6553 -7 441 282 58 10 chr6 163992418 163992624 -18422618 + L1ME1 LINE L1 1722 1937 -5185 956 278 69 43 chr6 163992648 163993282 -18421960 + L1ME1 LINE L1 2478 3128 -3994 2715 249 34 54 chr6 163993336 163994829 -18420413 + L1ME1 LINE L1 5172 6616 -345 2084 140 0 0 chr6 163994829 163995137 -18420105 + AluSx SINE Alu 1 308 -4 2715 249 34 54 chr6 163995137 163995468 -18419774 + L1ME1 LINE L1 6616 6952 -9 2157 79 57 0 chr6 163995996 163996275 -18418967 - AluSq SINE Alu -18 295 1 2045 214 68 63 chr6 163996646 163997189 -18418053 - MLT2B3 LTR ERVL -8 546 1 6618 83 20 1 chr6 163997403 163998330 -18416912 - L1MA1 LINE L1 -4 6298 5354 20653 178 103 27 chr6 163998352 164000328 -18414914 - L1P LINE L1 -1112 5034 3210 9998 66 7 1 chr6 164000328 164002423 -18412819 - L1PA6 LINE L1 -3 6151 4049 20653 178 103 27 chr6 164002423 164005115 -18410127 - L1P LINE L1 -2936 3210 11 28 79 0 0 chr6 164005791 164005854 -18409388 + AT_rich Low_complexity Low_complexity 1 63 0 1235 100 19 52 chr6 164006510 164006827 -18408415 + THE1B LTR MaLR 1 364 0 285 370 10 0 chr6 164006827 164006927 -18408315 - MIR SINE MIR -143 119 19 2683 123 49 0 chr6 164007206 164007614 -18407628 - MSTA LTR MaLR 0 428 1 2699 108 3 0 chr6 164008181 164008553 -18406689 - THE1C LTR MaLR 0 375 3 1056 201 32 0 chr6 164008598 164008787 -18406455 + MLT1A1 LTR MaLR 171 365 0 213 65 0 0 chr6 164009393 164009424 -18405818 + (T)n Simple_repeat Simple_repeat 1 31 0 201 309 0 0 chr6 164009832 164009887 -18405355 + CT-rich Low_complexity Low_complexity 17 71 0 340 381 82 16 chr6 164010780 164011095 -18404147 - L2 LINE L2 -738 2576 2241 1939 175 64 30 chr6 164011576 164012115 -18403127 - MLT2A2 LTR ERVL 0 554 1 1995 154 0 3 chr6 164012560 164012878 -18402364 - AluSx SINE Alu 0 312 1 41 48 0 0 chr6 164012962 164013024 -18402218 + AT_rich Low_complexity Low_complexity 1 62 0 2204 103 47 33 chr6 164013388 164013747 -18401495 + THE1B LTR MaLR 1 364 0 10301 207 19 5 chr6 164013822 164017189 -18398053 - L1PA16 LINE L1 0 6166 2755 3408 231 31 27 chr6 164017230 164018047 -18397195 - MER21B LTR ERV1 -1 862 43 321 280 0 0 chr6 164018045 164018120 -18397122 - MER21B LTR ERV1 -769 94 20 * 260 267 0 40 chr6 164018148 164018223 -18397019 - MER21B LTR ERV1 -791 72 1 2419 86 0 0 chr6 164018257 164018561 -18396681 + AluY SINE Alu 1 304 -7 721 250 32 16 chr6 164019050 164019238 -18396004 - MIR SINE MIR -61 201 11 987 305 104 24 chr6 164019578 164020155 -18395087 + MLT2F LTR ERVL 37 659 -4 638 313 61 56 chr6 164020162 164020811 -18394431 + ERVL LTR ERVL 11 682 -5032 446 315 44 6 chr6 164020838 164021019 -18394223 + ERVL LTR ERVL 798 985 -4779 * 458 263 73 0 chr6 164021018 164021155 -18394087 + HERVL LTR ERVL 4402 4548 -1106 925 266 27 30 chr6 164021201 164021536 -18393706 - L1MC4 LINE L1 -611 7431 7098 245 211 28 0 chr6 164021576 164021647 -18393595 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 25 75 0 0 chr6 164022599 164022652 -18392590 + AT_rich Low_complexity Low_complexity 1 53 0 256 229 0 0 chr6 164023105 164023153 -18392089 + L1MB7 LINE L1 5512 5559 -605 812 259 17 9 chr6 164023157 164023389 -18391853 + L1ME3A LINE L1 1 234 -5811 * 4166 188 16 26 chr6 164023385 164024282 -18390960 - L1MB3 LINE L1 0 6183 5296 3021 128 26 78 chr6 164024344 164024397 -18390845 + LTR26 LTR ERV1 1 55 -548 201 39 0 0 chr6 164024397 164024423 -18390819 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3021 128 26 78 chr6 164024423 164024840 -18390402 + LTR26 LTR ERV1 55 438 -165 2091 125 16 3 chr6 164024840 164025143 -18390099 + AluSc SINE Alu 3 309 0 3021 128 26 78 chr6 164025143 164025247 -18389995 + LTR26 LTR ERV1 438 546 -57 1562 179 15 0 chr6 164025416 164025679 -18389563 + LOR1-int LTR ERV1 6829 7095 -1025 1334 155 0 38 chr6 164025688 164025927 -18389315 + MER49 LTR ERV1 3 232 -691 3505 137 34 3 chr6 164026291 164026874 -18388368 + LTR26 LTR ERV1 1 601 -2 2426 230 51 71 chr6 164026881 164028130 -18387112 + L1ME3A LINE L1 238 1464 -4853 * 2472 229 49 8 chr6 164028126 164028741 -18386501 + L1MB7 LINE L1 5545 6184 0 326 283 68 42 chr6 164028810 164029102 -18386140 + L1ME3A LINE L1 4664 4972 -1592 3560 102 58 53 chr6 164029102 164029707 -18385535 + MER4B LTR ERV1 3 610 0 326 283 68 42 chr6 164029707 164029842 -18385400 + L1ME3A LINE L1 4972 5102 -1462 309 277 68 40 chr6 164030032 164030209 -18385033 + L1ME3A LINE L1 5329 5510 -1054 2041 136 52 22 chr6 164030222 164030626 -18384616 - L1MA8 LINE L1 -5 6286 5871 2893 107 86 23 chr6 164030626 164031101 -18384141 + MER4B LTR ERV1 1 505 -105 1380 155 4 0 chr6 164031101 164031327 -18383915 - L1MA8 LINE L1 -726 5586 5360 24 53 0 0 chr6 164031349 164031387 -18383855 + AT_rich Low_complexity Low_complexity 1 38 0 995 301 48 28 chr6 164031513 164032087 -18383155 + L1ME3A LINE L1 5718 6301 -287 527 242 76 6 chr6 164033552 164033709 -18381533 + L2 LINE L2 1843 2010 -1304 385 258 10 0 chr6 164033974 164034071 -18381171 + MLT1D LTR MaLR 402 499 -6 239 261 31 0 chr6 164034476 164034541 -18380701 + L1MD3 LINE L1 6610 6676 -1319 453 277 69 17 chr6 164034741 164034972 -18380270 + L1ME4a LINE L1 5649 5891 -230 206 265 20 0 chr6 164035101 164035150 -18380092 - MIR SINE MIR -148 114 65 29 0 0 0 chr6 164035484 164035513 -18379729 + AT_rich Low_complexity Low_complexity 1 29 0 302 0 26 0 chr6 164036117 164036155 -18379087 + (TG)n Simple_repeat Simple_repeat 1 39 0 443 295 160 6 chr6 164036309 164036465 -18378777 - MER5A DNA MER1_type 0 189 10 204 318 87 27 chr6 164036466 164036604 -18378638 + MIR SINE MIR 2 146 -65 427 215 97 65 chr6 164037104 164037290 -18377952 + LTR41 LTR ERVL 1 192 -581 308 303 93 78 chr6 164037342 164037741 -18377501 + LTR41 LTR ERVL 357 761 -12 2443 107 13 19 chr6 164037764 164038139 -18377103 - THE1C LTR MaLR -2 373 1 775 324 60 39 chr6 164038811 164039331 -18375911 + L2 LINE L2 2783 3309 -4 484 354 46 0 chr6 164040203 164040398 -18374844 + MIR SINE MIR 11 214 -48 694 322 30 26 chr6 164040424 164040657 -18374585 - MIR SINE MIR -21 241 8 225 194 56 42 chr6 164040683 164040755 -18374487 - MIR SINE MIR -99 109 37 1899 152 30 6 chr6 164041402 164041738 -18373504 - MER2 DNA MER2_type 0 344 1 309 256 0 12 chr6 164043140 164043222 -18372020 + MLT1K LTR MaLR 492 572 -16 22 0 0 0 chr6 164043575 164043597 -18371645 + AT_rich Low_complexity Low_complexity 1 22 0 502 242 7 0 chr6 164044359 164044649 -18370593 + (TA)n Simple_repeat Simple_repeat 1 292 0 2306 126 33 8 chr6 164046412 164046776 -18368466 - THE1C LTR MaLR 0 375 3 227 222 0 0 chr6 164046806 164046851 -18368391 + A-rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr6 164047296 164047323 -18367919 + AT_rich Low_complexity Low_complexity 1 27 0 386 286 37 97 chr6 164047346 164047807 -18367435 + L1MCb LINE L1 35 740 -5682 2174 90 3 42 chr6 164047849 164048160 -18367082 - AluSg SINE Alu -11 299 1 1005 141 7 0 chr6 164048681 164048830 -18366412 - AluSg SINE Alu -160 150 1 4976 232 106 77 chr6 164048892 164049347 -18365895 - L1MD3 LINE L1 -153 7842 7402 397 269 0 19 chr6 164049347 164049455 -18365787 - MLT1F1 LTR MaLR -456 111 6 4976 232 106 77 chr6 164049455 164051088 -18364154 - L1MD3 LINE L1 -593 7402 5583 1665 174 87 0 chr6 164051520 164051876 -18363366 + L1MA4 LINE L1 5809 6195 -105 295 229 14 76 chr6 164051894 164052038 -18363204 - L1MD3 LINE L1 -1778 4368 4234 1306 212 62 0 chr6 164052859 164053147 -18362095 - LTR43 LTR ERV1 -121 481 176 213 297 132 11 chr6 164053424 164053515 -18361727 + MIR SINE MIR 45 146 -62 346 196 43 54 chr6 164053674 164053766 -18361476 - LTR8 LTR ERV1 -14 677 587 479 279 73 61 chr6 164054751 164055435 -18359807 - L1MC5 LINE L1 -45 7916 7225 237 255 93 56 chr6 164055479 164055695 -18359547 - HAL1 LINE L1 -5 2502 2279 634 249 60 74 chr6 164056293 164056794 -18358448 - L1ME4a LINE L1 -11 6110 5617 259 260 52 0 chr6 164056835 164056912 -18358330 + MIR SINE MIR 182 262 0 646 275 77 4 chr6 164057057 164057290 -18357952 - MIR SINE MIR 0 262 13 1336 155 13 4 chr6 164059609 164059841 -18355401 - MER2 DNA MER2_type 0 345 112 41 48 0 0 chr6 164059862 164059924 -18355318 + AT_rich Low_complexity Low_complexity 1 62 0 32 0 0 0 chr6 164060216 164060248 -18354994 + AT_rich Low_complexity Low_complexity 1 32 0 320 321 42 37 chr6 164061637 164061827 -18353415 - L2 LINE L2 -124 3189 2999 1953 138 0 3 chr6 164062534 164062847 -18352395 + AluSq SINE Alu 1 312 0 1998 286 53 6 chr6 164062858 164063574 -18351668 + L1MEc LINE L1 35 784 -5612 466 257 68 8 chr6 164063575 164063788 -18351454 - LTR54B LTR ERV1 -221 277 1 2990 174 12 3 chr6 164063797 164064366 -18350876 - L1 LINE L1 -916 6292 5719 1241 203 21 12 chr6 164064367 164064722 -18350520 + LTR54 LTR ERV1 66 510 0 555 143 18 6 chr6 164064735 164064865 -18350377 + L1 LINE L1 5236 5363 -783 5848 202 56 74 chr6 164064999 164067558 -18347684 - L1 LINE L1 -3723 3485 1 292 359 28 19 chr6 164067911 164068017 -18347225 + L2 LINE L2 3146 3252 -20 311 254 0 0 chr6 164068933 164069000 -18346242 - MLT1E2-int LTR MaLR -320 1051 985 466 306 21 7 chr6 164069164 164069308 -18345934 - MLT1E2-int LTR MaLR -521 850 705 1510 253 63 40 chr6 164069500 164070073 -18345169 - MLT1E2-int LTR MaLR -771 600 15 1570 240 172 40 chr6 164070080 164070631 -18344611 - MLT1E2 LTR MaLR 0 626 3 1549 165 75 14 chr6 164070754 164070905 -18344337 + THE1C LTR MaLR 33 173 -202 213 39 0 0 chr6 164070905 164070931 -18344311 + (TC)n Simple_repeat Simple_repeat 1 26 0 1549 165 75 14 chr6 164070931 164071094 -18344148 + THE1C LTR MaLR 173 373 -2 2256 109 0 0 chr6 164071252 164071546 -18343696 - AluSq SINE Alu -18 295 2 2399 180 68 36 chr6 164072302 164072858 -18342384 + L1MB8 LINE L1 5604 6177 -1 280 218 36 25 chr6 164073510 164073610 -18341632 - L1M4c LINE L1 -4983 1401 1308 247 255 50 57 chr6 164073974 164074115 -18341127 + L2 LINE L2 3067 3206 -107 19145 84 1 4 chr6 164074220 164076848 -18338394 - L1P LINE L1 -3063 3083 462 685 176 0 8 chr6 164076953 164077072 -18338170 - AluSp SINE Alu -195 118 1 1116 169 3 185 chr6 164077205 164077567 -18337675 - L1PA13 LINE L1 -6157 630 335 * 8399 178 24 7 chr6 164077561 164079278 -18335964 - L1PA12 LINE L1 -5577 2004 1 2005 43 0 4 chr6 164079354 164079589 -18335653 + AluY SINE Alu 33 266 -45 650 231 13 7 chr6 164080046 164080196 -18335046 - MLT1B LTR MaLR 0 374 227 298 244 75 80 chr6 164080285 164080498 -18334744 - MLT1J LTR MaLR -189 322 111 1709 129 96 0 chr6 164081300 164081571 -18333671 + AluSq SINE Alu 1 297 -16 183 80 0 0 chr6 164081572 164081597 -18333645 + (TA)n Simple_repeat Simple_repeat 1 25 0 28 0 0 0 chr6 164081723 164081751 -18333491 + AT_rich Low_complexity Low_complexity 1 28 0 3716 270 41 12 chr6 164081936 164083214 -18332028 + L1M4 LINE L1 4065 5378 -768 13878 38 3 1 chr6 164083326 164085446 -18329796 - L1P2 LINE L1 -393 5762 3637 21 0 0 0 chr6 164087337 164087358 -18327884 + AT_rich Low_complexity Low_complexity 1 21 0 455 303 34 0 chr6 164090543 164090662 -18324580 + L2 LINE L2 3150 3272 0 316 206 15 0 chr6 164091645 164091713 -18323529 - L1MCa LINE L1 -4362 2064 1996 186 327 168 0 chr6 164092818 164092925 -18322317 + L2 LINE L2 2933 3057 -256 627 271 73 35 chr6 164093028 164093345 -18321897 + L1MC5 LINE L1 7302 7630 -331 338 265 6 62 chr6 164093406 164093568 -18321674 + L1MC5 LINE L1 7759 7911 -50 21 36 0 0 chr6 164093695 164093723 -18321519 + AT_rich Low_complexity Low_complexity 1 28 0 4462 164 43 31 chr6 164144057 164145099 -18270143 + L1PB4 LINE L1 5100 6155 -1 718 125 0 0 chr6 164145414 164145518 -18269724 + U6 snRNA snRNA 4 107 0 3372 201 37 4 chr6 164145521 164146251 -18268991 + L1PA15 LINE L1 1657 2358 -4505 5116 173 38 15 chr6 164146253 164146822 -18268420 + L1PA15 LINE L1 5158 5713 -1168 2207 106 0 3 chr6 164146822 164147123 -18268119 + AluSx SINE Alu 1 300 -12 5116 173 38 15 chr6 164147123 164147752 -18267490 + L1PA15 LINE L1 5713 6394 -487 2256 112 27 30 chr6 164147752 164148117 -18267125 + THE1B LTR MaLR 1 364 0 5116 173 38 15 chr6 164148117 164148593 -18266649 + L1PA15 LINE L1 6394 6858 -23 304 372 126 9 chr6 164148839 164149070 -18266172 + MIR SINE MIR 3 260 -2 473 189 35 101 chr6 164151015 164151164 -18264078 + L1ME3A LINE L1 5818 5959 -211 855 243 69 6 chr6 164151175 164151458 -18263784 - L1ME3 LINE L1 -27 6137 5835 1962 63 4 0 chr6 164151510 164151764 -18263478 - L1PA7 LINE L1 -137 6017 5763 * 3819 45 60 38 chr6 164151763 164151828 -18263414 - L1PA6 LINE L1 -269 5885 5823 2212 102 0 3 chr6 164151828 164152122 -18263120 - AluY SINE Alu -18 293 1 3819 45 60 38 chr6 164152122 164152587 -18262655 - L1PA6 LINE L1 -331 5823 5343 265 367 0 0 chr6 164152653 164152743 -18262499 - L2 LINE L2 -34 3279 3190 2146 123 0 0 chr6 164152859 164153151 -18262091 + AluSx SINE Alu 6 297 -15 1504 310 182 34 chr6 164153246 164154179 -18261063 - L2 LINE L2 -1991 1323 253 1634 159 144 9 chr6 164154179 164154519 -18260723 + LOR1b LTR ERV1 1 386 -75 22815 38 6 2 chr6 164155012 164158602 -18256640 - L1PA5 LINE L1 -2 6152 2549 446 297 54 43 chr6 164159011 164159287 -18255955 - L1MEc LINE L1 -6090 306 28 279 280 58 89 chr6 164160660 164160720 -18254522 + MLT1H LTR MaLR 31 91 -458 1499 100 36 5 chr6 164160720 164160940 -18254302 - MER30 DNA MER1_type 0 230 4 279 280 58 89 chr6 164160940 164161104 -18254138 + MLT1H LTR MaLR 91 248 -301 540 0 0 0 chr6 164161416 164161476 -18253766 + (TTTTA)n Simple_repeat Simple_repeat 2 61 0 300 294 113 6 chr6 164163161 164163338 -18251904 - MIR SINE MIR -2 260 65 2067 117 7 0 chr6 164163810 164164092 -18251150 + AluSc SINE Alu 1 284 -25 265 283 108 33 chr6 164164127 164164247 -18250995 + MIR3 SINE MIR 39 167 -41 203 281 0 35 chr6 164164889 164164946 -18250296 - L2 LINE L2 0 3272 3218 1637 212 120 7 chr6 164166458 164166916 -18248326 - L1MB8 LINE L1 0 6676 6167 685 333 24 4 chr6 164167104 164167350 -18247892 - MIR SINE MIR -5 257 7 5716 188 48 19 chr6 164167372 164168259 -18246983 - L1MC3 LINE L1 0 7785 6850 309 51 0 0 chr6 164168259 164168298 -18246944 + (TG)n Simple_repeat Simple_repeat 2 40 0 5716 188 48 19 chr6 164168298 164168650 -18246592 - L1MC3 LINE L1 -935 6850 6510 1839 256 40 17 chr6 164168623 164169275 -18245967 - L1MB8 LINE L1 -1328 5316 4650 * 2147 271 38 38 chr6 164169299 164170065 -18245177 - L1MB8 LINE L1 -5761 781 16 727 294 138 14 chr6 164170232 164170508 -18244734 + L2 LINE L2 2840 3149 -164 304 253 19 86 chr6 164170674 164170836 -18244406 - L1ME4a LINE L1 -4 6117 5967 255 338 54 49 chr6 164170957 164171348 -18243894 - L1ME4a LINE L1 -372 5749 5357 5942 109 39 0 chr6 164171384 164172424 -18242818 - L1PA14 LINE L1 -2 6159 5104 180 219 0 0 chr6 164174107 164174148 -18241094 + (CA)n Simple_repeat Simple_repeat 2 42 0 2355 138 70 0 chr6 164174755 164175154 -18240088 - MSTA LTR MaLR -1 427 1 365 150 0 62 chr6 164175476 164175556 -18239686 + L1PA7 LINE L1 6079 6153 -1 1419 201 28 21 chr6 164175759 164176047 -18239195 + AluJb SINE Alu 1 290 -22 1215 133 0 0 chr6 164176821 164176994 -18238248 - AluSp SINE Alu -7 306 134 1844 104 4 18 chr6 164177009 164177287 -18237955 - AluSc SINE Alu -35 274 1 1958 177 5 15 chr6 164178017 164178364 -18236878 - MLT1A1 LTR MaLR 0 365 1 183 259 56 0 chr6 164178406 164178460 -18236782 - MIR SINE MIR -120 142 86 207 100 0 0 chr6 164179551 164179581 -18235661 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 387 149 119 0 chr6 164179581 164179648 -18235594 - MER72 LTR ERV1 -63 659 585 367 43 0 0 chr6 164182091 164182137 -18233105 + MADE1 DNA Mariner 1 46 -34 599 251 146 31 chr6 164182735 164183126 -18232116 - L1MEc LINE L1 -2956 3259 2824 733 251 6 12 chr6 164183354 164183525 -18231717 - MER58A DNA MER1_type -15 209 40 377 331 100 21 chr6 164183742 164184501 -18230741 - L1MEc LINE L1 -4037 2359 1541 240 224 106 35 chr6 164184660 164184745 -18230497 - MLT1K LTR MaLR -120 468 378 5549 106 48 2 chr6 164185044 164185885 -18229357 + L1PA11 LINE L1 5296 6174 0 22 0 0 0 chr6 164185890 164185912 -18229330 + AT_rich Low_complexity Low_complexity 1 22 0 2205 96 6 13 chr6 164186446 164186760 -18228482 + AluSx SINE Alu 1 312 0 2536 271 57 20 chr6 164187437 164188664 -18226578 + L1 LINE L1 2473 3745 -2401 661 203 71 35 chr6 164188663 164188860 -18226382 + L1MCa LINE L1 159 362 -6202 * 2133 204 35 4 chr6 164188877 164189537 -18225705 + L1MCa LINE L1 684 1361 -4851 319 241 63 29 chr6 164190302 164190476 -18224766 + L1MC4a LINE L1 5739 5918 -1890 21 0 0 0 chr6 164190790 164190811 -18224431 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 164191439 164191477 -18223765 + AT_rich Low_complexity Low_complexity 1 38 0 2434 53 10 3 chr6 164192649 164192951 -18222291 - AluY SINE Alu -7 304 1 1704 199 38 3 chr6 164193116 164193508 -18221734 + L1 LINE L1 4888 5293 -853 308 305 86 50 chr6 164193514 164194140 -18221102 - L1M4 LINE L1 -1714 4432 3784 247 258 88 42 chr6 164194250 164194510 -18220732 - L1M4 LINE L1 -2863 3283 3012 15193 88 16 10 chr6 164194623 164197161 -18218081 + L1P3 LINE L1 3128 5677 -477 2017 137 0 3 chr6 164197235 164197534 -18217708 + AluSx SINE Alu 1 298 -14 27 49 0 0 chr6 164197599 164197640 -18217602 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr6 164198866 164198902 -18216340 + AT_rich Low_complexity Low_complexity 1 36 0 343 216 17 126 chr6 164198961 164199184 -18216058 - LTR28 LTR ERV1 -280 740 578 * 3098 204 272 56 chr6 164199174 164200279 -18214963 - MER52A LTR ERV1 -411 1344 1 1490 143 54 57 chr6 164201057 164201432 -18213810 - MER67C LTR ERV1 -262 252 1 3152 106 49 10 chr6 164201517 164202009 -18213233 - MER9 LTR ERVK 0 511 1 638 263 300 11 chr6 164202073 164202423 -18212819 + L2 LINE L2 2863 3313 0 231 314 52 66 chr6 164202436 164202707 -18212535 - L2 LINE L2 -821 2493 2227 403 326 115 59 chr6 164202839 164202979 -18212263 - L2 LINE L2 -109 3204 3073 2069 124 3 13 chr6 164202979 164203294 -18211948 + AluSx SINE Alu 1 312 0 403 326 115 59 chr6 164203294 164203457 -18211785 - L2 LINE L2 -240 3073 2884 249 267 8 67 chr6 164204098 164204218 -18211024 + L1MC4 LINE L1 6614 6726 -1316 317 261 22 37 chr6 164204429 164204563 -18210679 - MER103 DNA DNA -12 154 23 2424 79 7 0 chr6 164205510 164205815 -18209427 - AluY SINE Alu -4 307 1 1274 292 103 17 chr6 164205986 164206579 -18208663 + L2 LINE L2 2270 3055 -258 2252 71 6 59 chr6 164207781 164208103 -18207139 - AluSg SINE Alu -5 305 1 256 305 95 0 chr6 164208706 164208801 -18206441 + MLT1J LTR MaLR 335 438 -73 746 283 48 33 chr6 164209751 164210083 -18205159 + L1ME3 LINE L1 5795 6134 -28 1408 198 25 68 chr6 164210084 164210408 -18204834 - AluJo SINE Alu 0 312 3 254 26 53 0 chr6 164210698 164210736 -18204506 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2117 127 3 0 chr6 164210738 164211021 -18204221 - AluSx SINE Alu -28 284 1 1812 173 48 6 chr6 164211227 164211585 -18203657 - MER93b LTR ERV1 0 373 1 22 88 0 0 chr6 164211727 164211784 -18203458 + AT_rich Low_complexity Low_complexity 1 57 0 262 284 0 0 chr6 164212086 164212153 -18203089 + MIR SINE MIR 82 148 -60 383 100 62 62 chr6 164212318 164212398 -18202844 + MADE1 DNA Mariner 1 80 0 2106 113 10 0 chr6 164214465 164214757 -18200485 - AluSg SINE Alu -15 295 1 2246 113 0 3 chr6 164214757 164215057 -18200185 - AluSq SINE Alu -14 299 1 5991 153 24 17 chr6 164215499 164215853 -18199389 - L1PB1 LINE L1 -1 6150 5800 339 25 0 0 chr6 164215853 164215893 -18199349 + (TG)n Simple_repeat Simple_repeat 2 41 0 5991 153 24 17 chr6 164215893 164217348 -18197894 - L1PB1 LINE L1 -351 5800 4323 227 364 30 0 chr6 164219505 164219604 -18195638 + L2 LINE L2 2933 3034 -238 633 288 34 15 chr6 164221355 164221560 -18193682 + MLT1J2 LTR MaLR 5 213 -237 315 217 29 0 chr6 164221929 164221998 -18193244 - L2 LINE L2 -814 2500 2430 26 50 0 0 chr6 164223103 164223143 -18192099 + AT_rich Low_complexity Low_complexity 1 40 0 4223 272 25 50 chr6 164223223 164224827 -18190415 + L1PBa LINE L1 74 1636 -5227 * 5471 169 25 15 chr6 164224795 164225782 -18189460 + L1PB3 LINE L1 1 997 -5207 1009 115 14 7 chr6 164225782 164225930 -18189312 - Charlie3 DNA MER1_type -4 2706 2558 1858 163 77 6 chr6 164225930 164226280 -18188962 - THE1C LTR MaLR 0 375 1 4111 112 82 6 chr6 164226280 164226904 -18188338 - THE1C-int LTR MaLR 0 1580 910 5409 152 43 1 chr6 164226909 164228632 -18186610 + L1PB3 LINE L1 4410 6209 -2 26 0 0 0 chr6 164228891 164228917 -18186325 + AT_rich Low_complexity Low_complexity 1 26 0 312 314 57 8 chr6 164230206 164230330 -18184912 + MIR SINE MIR 2 131 -131 1844 214 60 68 chr6 164231122 164231607 -18183635 + MER92B LTR ERV1 13 500 -136 2097 106 6 26 chr6 164231607 164231782 -18183460 - AluSx SINE Alu -7 305 128 207 0 0 0 chr6 164231782 164231805 -18183437 + (TG)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chr6 164231804 164231825 -18183417 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2097 106 6 26 chr6 164231805 164231960 -18183282 - AluSx SINE Alu -184 128 1 1844 214 60 68 chr6 164231960 164232091 -18183151 + MER92B LTR ERV1 500 624 -12 326 338 32 32 chr6 164232107 164232264 -18182978 + L2 LINE L2 3108 3264 -8 210 178 14 27 chr6 164233581 164233654 -18181588 + (TA)n Simple_repeat Simple_repeat 2 73 0 267 31 0 0 chr6 164233901 164233933 -18181309 + (TA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr6 164234399 164234420 -18180822 + AT_rich Low_complexity Low_complexity 1 21 0 630 213 18 41 chr6 164234928 164235097 -18180145 + L1M4 LINE L1 25 189 -6353 * 2740 210 60 38 chr6 164235076 164235914 -18179328 + L1M4 LINE L1 854 1709 -4833 253 374 19 0 chr6 164236001 164236108 -18179134 + L2 LINE L2 2266 2374 -940 1787 175 41 36 chr6 164236334 164236722 -18178520 - MLT1B LTR MaLR 0 390 1 356 204 0 31 chr6 164236738 164236836 -18178406 + L1M4 LINE L1 2003 2097 -4549 1586 179 46 4 chr6 164236938 164237218 -18178024 + AluJo SINE Alu 1 292 -20 2225 109 0 28 chr6 164239270 164239591 -18175651 + AluSx SINE Alu 1 312 0 450 43 0 29 chr6 164239730 164239799 -18175443 - AluY SINE Alu -8 303 237 343 279 110 15 chr6 164240204 164240340 -18174902 + L2 LINE L2 680 828 -2486 327 326 14 0 chr6 164240349 164240490 -18174752 + L2 LINE L2 945 1087 -2227 942 286 39 33 chr6 164241005 164241341 -18173901 + L2 LINE L2 1338 1675 -1639 383 292 8 25 chr6 164241396 164241516 -18173726 - MIR SINE MIR -73 189 72 1382 199 41 55 chr6 164241848 164242140 -18173102 + AluJo SINE Alu 1 288 -24 652 316 35 59 chr6 164243227 164243632 -18171610 + L1MEc LINE L1 183 577 -5986 1335 213 57 10 chr6 164243707 164244003 -18171239 - MLT1C LTR MaLR -2 465 156 360 276 141 30 chr6 164244003 164244202 -18171040 + L1MEc LINE L1 1370 1590 -4794 254 236 0 34 chr6 164244202 164244291 -18170951 + T-rich Low_complexity Low_complexity 4 89 0 849 236 52 23 chr6 164244577 164244993 -18170249 + L1MC4 LINE L1 6694 7400 -488 1190 271 30 38 chr6 164245019 164245091 -18170151 - MSTD LTR MaLR 0 396 325 1779 173 45 6 chr6 164245091 164245426 -18169816 - MER7A DNA MER2_type 0 346 1 1190 271 30 38 chr6 164245426 164245752 -18169490 - MSTD LTR MaLR -71 325 1 1342 259 84 2 chr6 164245752 164246193 -18169049 + L1MC4 LINE L1 7425 7901 -141 21 57 0 0 chr6 164246285 164246320 -18168922 + AT_rich Low_complexity Low_complexity 1 35 0 2089 120 0 0 chr6 164246450 164246734 -18168508 + AluSg1 SINE Alu 1 284 -25 26 30 0 0 chr6 164246734 164246767 -18168475 + AT_rich Low_complexity Low_complexity 1 33 0 8961 105 10 3 chr6 164248027 164250144 -18165098 + L1PA8A LINE L1 3991 6119 -12 474 314 91 44 chr6 164250219 164250627 -18164615 - L2 LINE L2 -1 3271 2845 369 0 0 0 chr6 164250956 164250997 -18164245 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2194 73 18 0 chr6 164250999 164251274 -18163968 - AluSp SINE Alu -31 282 3 1731 152 60 39 chr6 164251310 164251645 -18163597 + MER61A LTR ERV1 1 342 -1 462 283 14 0 chr6 164251708 164251853 -18163389 - L1MEc LINE L1 -6209 187 41 258 309 129 26 chr6 164252084 164252278 -18162964 - MIR SINE MIR -13 249 36 2848 16 0 0 chr6 164253421 164253736 -18161506 - AluYb8 SINE Alu -3 315 1 1817 123 26 7 chr6 164254604 164254873 -18160369 - THE1B LTR MaLR -1 363 90 2239 187 7 19 chr6 164255047 164255464 -18159778 - MLT2D LTR ERVL 0 414 3 282 289 98 40 chr6 164256041 164256214 -18159028 - MIR SINE MIR -8 254 72 856 232 11 5 chr6 164256956 164257146 -18158096 + L1PA16 LINE L1 5959 6149 -17 404 285 73 8 chr6 164258105 164258228 -18157014 - MIR SINE MIR -108 154 24 211 203 31 0 chr6 164258362 164258426 -18156816 + (TA)n Simple_repeat Simple_repeat 1 66 0 284 286 22 11 chr6 164258929 164259020 -18156222 + GA-rich Low_complexity Low_complexity 3 94 0 32 0 0 0 chr6 164259093 164259125 -18156117 + AT_rich Low_complexity Low_complexity 1 32 0 1696 191 3 10 chr6 164259125 164259439 -18155803 + AluJb SINE Alu 1 312 0 348 315 39 8 chr6 164259969 164260099 -18155143 + L3 LINE CR1 1335 1468 -109 387 325 71 18 chr6 164260197 164260366 -18154876 + MIR SINE MIR 29 206 -56 2483 93 65 0 chr6 164260998 164261352 -18153890 - MER51B LTR ERV1 0 377 1 4067 147 139 118 chr6 164261362 164261653 -18153589 - MER51B-int LTR ERV1 -11 7805 7522 2068 107 16 35 chr6 164261653 164261788 -18153454 + AluSc SINE Alu 1 137 -172 306 0 0 0 chr6 164261788 164261822 -18153420 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2068 107 16 35 chr6 164261822 164261996 -18153246 + AluSc SINE Alu 137 304 -5 4067 147 139 118 chr6 164261996 164262831 -18152411 - MER51B-int LTR ERV1 -294 7522 6655 3393 135 25 2 chr6 164262826 164263514 -18151728 - MER51B-int LTR ERV1 -1101 6436 5686 * 232 273 30 0 chr6 164263560 164263659 -18151583 - L1M4 LINE L1 -3759 2387 2286 535 262 155 19 chr6 164264424 164264695 -18150547 - MER21B LTR ERV1 -125 738 431 325 265 41 20 chr6 164264828 164264926 -18150316 - MER21B LTR ERV1 -637 226 127 368 242 21 11 chr6 164264994 164265089 -18150153 - MER21B LTR ERV1 -767 96 1 304 308 8 0 chr6 164265091 164265211 -18150031 - HAL1 LINE L1 -885 1622 1502 776 217 66 20 chr6 164265315 164265513 -18149729 - MIR SINE MIR -32 230 24 2435 148 68 70 chr6 164265980 164266512 -18148730 + LTR26B LTR ERV1 1 531 0 190 379 21 0 chr6 164267368 164267463 -18147779 - L2 LINE L2 -3 3269 3173 22 0 0 0 chr6 164267570 164267592 -18147650 + AT_rich Low_complexity Low_complexity 1 22 0 928 224 16 0 chr6 164269822 164270005 -18145237 + MER5A DNA MER1_type 1 186 -3 441 296 109 9 chr6 164270452 164270672 -18144570 - MIR SINE MIR -14 248 7 2143 123 0 7 chr6 164271103 164271412 -18143830 - AluSx SINE Alu -5 307 1 21 100 0 0 chr6 164271717 164271787 -18143455 + AT_rich Low_complexity Low_complexity 1 70 0 468 270 58 7 chr6 164271979 164272116 -18143126 + MIR SINE MIR 58 201 -61 25 0 0 0 chr6 164272257 164272282 -18142960 + AT_rich Low_complexity Low_complexity 1 25 0 568 289 68 25 chr6 164272310 164272632 -18142610 + MARNA DNA Mariner 54 389 -197 420 310 32 19 chr6 164272684 164272842 -18142400 - HsTC2 DNA Tc2 -1736 162 3 3987 237 56 94 chr6 164273018 164273138 -18142104 - L1M4 LINE L1 -1198 4948 4825 396 0 0 0 chr6 164273138 164273182 -18142060 + (CA)n Simple_repeat Simple_repeat 2 45 0 3987 237 56 94 chr6 164273182 164273583 -18141659 - L1M4 LINE L1 -1321 4825 4410 667 206 15 8 chr6 164273583 164273714 -18141528 - FLAM_A SINE Alu -1 132 1 3987 237 56 94 chr6 164273714 164274241 -18141001 - L1M4 LINE L1 -1736 4410 3865 2163 135 132 5 chr6 164274241 164274619 -18140623 + MSTA LTR MaLR 1 426 -2 3987 237 56 94 chr6 164274619 164275575 -18139667 - L1M4 LINE L1 -2281 3865 3031 2318 178 29 2 chr6 164275575 164275996 -18139246 - MSTB1 LTR MaLR 0 432 1 3987 237 56 94 chr6 164275996 164276208 -18139034 - L1M4 LINE L1 -3115 3031 2813 315 122 0 0 chr6 164276265 164276314 -18138928 + (TG)n Simple_repeat Simple_repeat 2 50 0 333 311 0 0 chr6 164276351 164276441 -18138801 - L1MC4 LINE L1 -1339 6703 6614 333 257 20 40 chr6 164276380 164276481 -18138761 + L1MC4 LINE L1 6615 6713 -1329 12144 179 83 7 chr6 164276727 164279060 -18136182 + L1M1 LINE L1 13 2521 -5044 620 188 54 0 chr6 164279061 164279134 -18136108 + MLT2B3 LTR ERVL 437 519 -35 360 0 0 0 chr6 164279134 164279174 -18136068 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 620 188 54 0 chr6 164279174 164279212 -18136030 + MLT2B3 LTR ERVL 519 554 0 1901 209 71 59 chr6 164279238 164279784 -18135458 - MLT2B3 LTR ERVL -1 553 1 336 331 30 30 chr6 164280035 164280201 -18135041 - MIR SINE MIR -47 215 50 213 65 0 0 chr6 164280814 164280845 -18134397 + (CA)n Simple_repeat Simple_repeat 2 32 0 2538 44 0 19 chr6 164281521 164281838 -18133404 + AluY SINE Alu 1 311 0 341 314 177 8 chr6 164282681 164282805 -18132437 + L2 LINE L2 3127 3271 -1 400 167 21 10 chr6 164284379 164284475 -18130767 + CT-rich Low_complexity Low_complexity 4 100 0 3750 96 2 11 chr6 164284807 164285348 -18129894 - L1PA12 LINE L1 -1 6167 5632 4655 66 1 157 chr6 164285348 164286163 -18129079 + LTR12 LTR ERV1 1 688 0 5771 146 26 5 chr6 164286163 164287026 -18128216 - L1PA12 LINE L1 -3 6165 4746 3572 165 5 1 chr6 164287022 164287683 -18127559 + L1P LINE L1 3891 4553 -1593 * 1420 103 71 36 chr6 164287683 164287936 -18127306 - THE1B LTR MaLR -102 262 1 255 269 119 0 chr6 164287946 164288013 -18127229 - MER45 DNA AcHobo -1506 75 1 28 48 0 0 chr6 164288123 164288165 -18127077 + AT_rich Low_complexity Low_complexity 1 42 0 430 307 47 13 chr6 164288748 164289048 -18126194 - L1ME4a LINE L1 -204 5917 5608 2147 115 0 0 chr6 164289735 164290014 -18125228 + AluSg SINE Alu 1 279 -31 240 298 0 29 chr6 164290084 164290188 -18125054 + L1MC/D LINE L1 5693 5793 -2015 1628 189 0 21 chr6 164290222 164290513 -18124729 + AluJb SINE Alu 1 285 -27 21 36 0 0 chr6 164290513 164290541 -18124701 + AT_rich Low_complexity Low_complexity 1 28 0 2002 251 47 10 chr6 164291397 164291907 -18123335 + MLT1F LTR MaLR 14 542 0 243 346 58 85 chr6 164292271 164292751 -18122491 + L2 LINE L2 2806 3272 0 305 299 21 31 chr6 164292848 164292945 -18122297 - MER5A DNA MER1_type 0 189 94 380 286 0 9 chr6 164292965 164293070 -18122172 + MIR SINE MIR 58 161 -101 873 237 83 26 chr6 164293159 164293387 -18121855 + MIR SINE MIR 1 241 -21 1873 181 11 14 chr6 164294099 164294448 -18120794 - MER7A DNA MER2_type 0 346 1 22 70 0 0 chr6 164294934 164294977 -18120265 + AT_rich Low_complexity Low_complexity 1 43 0 427 261 168 15 chr6 164295414 164295617 -18119625 + LTR50 LTR ERVL 1 234 -561 527 260 158 21 chr6 164295747 164296032 -18119210 + LTR50 LTR ERVL 471 794 -1 564 258 0 0 chr6 164296563 164296741 -18118501 + (CA)n Simple_repeat Simple_repeat 1 178 0 546 256 0 0 chr6 164296783 164296963 -18118279 + (CA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr6 164297638 164297659 -18117583 + AT_rich Low_complexity Low_complexity 1 21 0 338 154 13 0 chr6 164297763 164297841 -18117401 + CT-rich Low_complexity Low_complexity 1 79 0 259 283 38 9 chr6 164297846 164297952 -18117290 - MLT1L LTR MaLR -85 530 422 266 304 10 0 chr6 164298102 164298204 -18117038 - MLT1L LTR MaLR -373 242 140 234 253 32 53 chr6 164298616 164298711 -18116531 - L3 LINE CR1 -212 1365 1273 408 128 8 160 chr6 164299732 164299792 -18115450 + L1MB7 LINE L1 6012 6045 -139 2166 98 0 0 chr6 164299792 164300068 -18115174 + AluSx SINE Alu 19 294 -18 408 128 8 160 chr6 164300068 164300132 -18115110 + L1MB7 LINE L1 6045 6117 -67 23 0 0 0 chr6 164300132 164300155 -18115087 + AT_rich Low_complexity Low_complexity 1 23 0 232 360 58 16 chr6 164301301 164301490 -18113752 - L2 LINE L2 -978 2336 2140 2296 95 3 0 chr6 164301741 164302045 -18113197 + AluSc SINE Alu 1 305 -4 283 304 26 77 chr6 164302871 164303065 -18112177 + MIR SINE MIR 70 253 -9 1971 101 4 14 chr6 164303288 164303565 -18111677 - AluSq SINE Alu -39 274 1 180 0 0 0 chr6 164304925 164304945 -18110297 + (A)n Simple_repeat Simple_repeat 1 20 0 1991 136 0 57 chr6 164305367 164305698 -18109544 + AluSx SINE Alu 1 312 0 365 120 0 27 chr6 164305698 164305773 -18109469 + (GGAGA)n Simple_repeat Simple_repeat 4 76 0 204 179 0 0 chr6 164306778 164306817 -18108425 + (TG)n Simple_repeat Simple_repeat 2 40 0 1907 117 8 4 chr6 164307022 164307288 -18107954 + AluSx SINE Alu 1 267 -45 845 246 25 56 chr6 164307825 164308109 -18107133 - MLT1B LTR MaLR 0 390 116 421 344 70 4 chr6 164308105 164308335 -18106907 - LTR16A LTR ERVL -60 390 146 * 996 370 44 33 chr6 164308669 164310068 -18105174 - HERV16 LTR ERVL -458 5306 3892 1427 322 50 28 chr6 164310142 164310897 -18104345 - HERV16 LTR ERVL -2490 2506 1735 280 319 83 32 chr6 164311175 164311332 -18103910 - HERV16 LTR ERVL -3664 1332 1168 727 328 96 53 chr6 164311437 164312384 -18102858 - HERV16 LTR ERVL -3972 1024 37 395 334 15 56 chr6 164312423 164312761 -18102481 - LTR16A LTR ERVL -30 420 97 185 369 0 0 chr6 164312832 164312897 -18102345 + L2 LINE L2 2992 3056 -216 403 310 40 40 chr6 164312952 164313178 -18102064 + L2 LINE L2 3084 3309 -4 3730 155 26 24 chr6 164313446 164314170 -18101072 + L1MC1 LINE L1 5482 6207 -126 2616 125 0 8 chr6 164314173 164314565 -18100677 - L1PA11 LINE L1 -4 6170 5782 649 183 29 7 chr6 164314565 164314695 -18100547 + L1MC1 LINE L1 6189 6328 -5 2866 7 0 0 chr6 164314710 164315019 -18100223 + AluYa5 SINE Alu 1 309 -2 2729 109 25 0 chr6 164315103 164315506 -18099736 + MLT2A2 LTR ERVL 1 413 -40 344 126 0 60 chr6 164315511 164315678 -18099564 + (TA)n Simple_repeat Simple_repeat 2 158 0 323 59 78 0 chr6 164315687 164315738 -18099504 + MLT2A2 LTR ERVL 399 453 0 2137 210 63 35 chr6 164318789 164319388 -18095854 + L1MB8 LINE L1 5562 6177 -1 198 273 193 93 chr6 164319395 164319556 -18095686 - MIR SINE MIR -12 250 74 2307 93 0 0 chr6 164319618 164319919 -18095323 + AluY SINE Alu 1 301 -10 6636 149 155 35 chr6 164319930 164321455 -18093787 - pTR5 LTR ERV1 -6 2432 724 26 0 0 0 chr6 164321594 164321620 -18093622 + AT_rich Low_complexity Low_complexity 1 26 0 25 75 0 0 chr6 164321754 164321807 -18093435 + AT_rich Low_complexity Low_complexity 1 53 0 286 329 92 32 chr6 164321901 164322121 -18093121 - MIR SINE MIR -19 243 15 2035 167 31 67 chr6 164322465 164322943 -18092299 + LOR1b LTR ERV1 1 461 0 1438 159 52 49 chr6 164323149 164323265 -18091977 + MER44D DNA MER2_type 12 126 -2365 2103 120 3 0 chr6 164323265 164323604 -18091638 - AluSq SINE Alu 0 340 1 1438 159 52 49 chr6 164323604 164323813 -18091429 + MER44D DNA MER2_type 126 609 0 254 273 34 57 chr6 164324455 164324543 -18090699 + MIR SINE MIR 88 173 -89 11572 191 36 43 chr6 164324873 164328193 -18087049 + L1M2 LINE L1 262 3558 -3290 4668 140 14 25 chr6 164328193 164329042 -18086200 + L1MA4A LINE L1 5464 6303 0 512 243 29 0 chr6 164329048 164329184 -18086058 - MER3 DNA MER1_type -69 140 1 343 333 59 0 chr6 164329327 164329429 -18085813 + L2 LINE L2 3143 3250 -22 1331 99 5 5 chr6 164331066 164331289 -18083953 + L1PA7 LINE L1 3019 3241 -2905 13232 79 16 1 chr6 164331291 164333994 -18081248 + L1PA7 LINE L1 3427 6149 -5 2123 119 41 0 chr6 164333999 164334292 -18080950 + AluSq SINE Alu 1 305 -8 549 317 56 53 chr6 164334941 164335297 -18079945 + HAL1 LINE L1 1263 1619 -888 534 262 60 30 chr6 164335316 164335484 -18079758 - L2 LINE L2 0 3313 3141 1452 139 171 17 chr6 164335536 164335823 -18079419 - Tigger1 DNA MER2_type -12 2406 2076 * 8500 156 40 25 chr6 164335816 164336116 -18079126 - Tigger1 DNA MER2_type -837 1581 1287 2095 113 0 7 chr6 164336116 164336400 -18078842 + AluSx SINE Alu 1 282 -30 8500 156 40 25 chr6 164336400 164337654 -18077588 - Tigger1 DNA MER2_type -1131 1287 4 474 256 105 7 chr6 164337661 164337905 -18077337 - MLT1G LTR MaLR -35 555 197 722 235 142 14 chr6 164337914 164338226 -18077016 + MER39 LTR ERV1 1 508 -199 2016 104 0 46 chr6 164338241 164338548 -18076694 + AluY SINE Alu 1 293 -18 1064 173 33 125 chr6 164338552 164338881 -18076361 - LTR38B LTR ERV1 -311 299 1 1608 175 18 18 chr6 164338911 164339196 -18076046 - AluJo SINE Alu -27 285 1 2089 121 13 22 chr6 164340322 164340637 -18074605 + AluSx SINE Alu 1 312 0 366 171 0 0 chr6 164340663 164340733 -18074509 + GA-rich Low_complexity Low_complexity 2 71 0 803 280 114 36 chr6 164341000 164341447 -18073795 + L1MC/D LINE L1 5337 5818 -1990 2429 179 23 21 chr6 164342087 164342572 -18072670 - MER66B LTR ERV1 0 486 1 447 287 44 0 chr6 164342630 164342766 -18072476 - L2 LINE L2 -991 2323 2182 555 330 65 39 chr6 164342766 164343151 -18072091 - LTR16C LTR ERVL 0 491 97 411 268 36 0 chr6 164343280 164343392 -18071850 - L2 LINE L2 -1157 2157 2042 1503 189 52 79 chr6 164343942 164344386 -18070856 + MSTB1 LTR MaLR 1 432 0 240 216 20 0 chr6 164344522 164344573 -18070669 - LTR33 LTR ERVL -2 519 468 758 311 104 19 chr6 164344615 164344981 -18070261 - LTR33 LTR ERVL -124 397 1 301 330 115 40 chr6 164344984 164345463 -18069779 + L1ME LINE L1 4537 5051 -1095 236 191 0 0 chr6 164345770 164345812 -18069430 + L1P4 LINE L1 5729 5770 -396 398 306 57 60 chr6 164345812 164346148 -18069094 + L1ME LINE L1 5267 5601 -561 25 65 0 0 chr6 164346148 164346194 -18069048 + AT_rich Low_complexity Low_complexity 1 46 0 887 105 70 89 chr6 164346634 164346845 -18068397 + MER83B-int LTR ERV1 989 3272 -3059 421 244 12 0 chr6 164346898 164346984 -18068258 + MER83B-int LTR ERV1 3264 3350 -2981 468 218 0 10 chr6 164347031 164347132 -18068110 + MER83B-int LTR ERV1 3348 3447 -2884 659 194 64 60 chr6 164347252 164347775 -18067467 + MER83B-int LTR ERV1 1707 3714 -2617 1954 155 7 16 chr6 164347781 164348091 -18067151 + AluSx SINE Alu 4 310 -2 930 221 24 111 chr6 164348128 164348544 -18066698 + MER83B-int LTR ERV1 3162 3541 -1339 1539 182 32 49 chr6 164348551 164348897 -18066345 + MER65A LTR ERV1 1 340 -105 1962 131 3 22 chr6 164348901 164349253 -18065989 - MER4A LTR ERV1 0 664 261 627 135 21 0 chr6 164349253 164349349 -18065893 - MER4A LTR ERV1 -566 98 1 14788 101 54 15 chr6 164349356 164351745 -18063497 - MER4A-int LTR ERV1 -2 6596 4116 294 83 17 133 chr6 164351778 164351838 -18063404 - MER4A LTR ERV1 -351 313 261 575 122 20 20 chr6 164351838 164351936 -18063306 - MER4A LTR ERV1 -566 98 1 480 147 20 39 chr6 164351940 164352042 -18063200 + MER65A LTR ERV1 345 444 -1 3374 185 43 13 chr6 164352043 164352954 -18062288 + MER57A-int LTR ERV1 4624 5506 -2031 189 0 0 0 chr6 164352954 164352975 -18062267 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 450 0 0 0 chr6 164352974 164353024 -18062218 + (TG)n Simple_repeat Simple_repeat 1 50 0 3374 185 43 13 chr6 164352975 164353243 -18061999 + MER57A-int LTR ERV1 5506 5823 -1714 6123 193 33 22 chr6 164353567 164354875 -18060367 + MER57A-int LTR ERV1 5823 7144 -393 849 173 227 14 chr6 164354875 164355014 -18060228 + LTR54B LTR ERV1 1 109 -389 2546 62 0 0 chr6 164355014 164355320 -18059922 + AluY SINE Alu 1 306 -5 849 173 227 14 chr6 164355320 164355458 -18059784 + LTR54B LTR ERV1 109 337 -161 652 221 0 14 chr6 164355459 164355599 -18059643 + MER57A-int LTR ERV1 7397 7534 -3 2070 170 7 29 chr6 164355603 164356014 -18059228 + MER57A LTR ERV1 2 403 0 21 0 0 0 chr6 164356635 164356656 -18058586 + AT_rich Low_complexity Low_complexity 1 21 0 638 293 22 22 chr6 164356927 164357156 -18058086 + L1MEd LINE L1 58 286 -5833 236 292 0 0 chr6 164357244 164357309 -18057933 + L1MEd LINE L1 1186 1250 -4869 442 323 19 39 chr6 164357791 164358001 -18057241 + MIR SINE MIR 11 217 -45 1524 218 115 48 chr6 164358001 164358479 -18056763 + MER67D LTR ERV1 1 510 -4 442 323 19 39 chr6 164358479 164358525 -18056717 + MIR SINE MIR 217 262 0 188 357 95 0 chr6 164359005 164359173 -18056069 + L2 LINE L2 3122 3305 -8 3043 246 97 55 chr6 164359280 164359521 -18055721 + Zaphod DNA AcHobo 190 419 -3612 2553 62 0 0 chr6 164359521 164359826 -18055416 - AluY SINE Alu -6 305 1 3043 246 97 55 chr6 164359826 164361035 -18054207 + Zaphod DNA AcHobo 419 1701 -2330 514 268 47 52 chr6 164361869 164362045 -18053197 + MIR SINE MIR 20 196 -66 1646 171 162 57 chr6 164362045 164362502 -18052740 + MLT1D LTR MaLR 1 505 0 514 268 47 52 chr6 164362502 164362538 -18052704 + MIR SINE MIR 196 231 -31 22 0 0 0 chr6 164363793 164363815 -18051427 + AT_rich Low_complexity Low_complexity 1 22 0 282 180 0 0 chr6 164364256 164364317 -18050925 + GA-rich Low_complexity Low_complexity 2 62 0 25 31 0 0 chr6 164364323 164364355 -18050887 + AT_rich Low_complexity Low_complexity 1 32 0 18674 174 55 15 chr6 164364386 164364767 -18050475 + L1MA2 LINE L1 22 386 -7179 2510 76 0 0 chr6 164364767 164365069 -18050173 - AluY SINE Alu -9 302 1 18674 174 55 15 chr6 164365069 164368430 -18046812 + L1MA2 LINE L1 386 3611 -3954 2577 53 0 3 chr6 164368430 164368734 -18046508 + AluY SINE Alu 1 303 -8 18674 174 55 15 chr6 164368734 164369439 -18045803 + L1MA2 LINE L1 3611 4286 -3279 3289 113 10 0 chr6 164369439 164369927 -18045315 + L1PA14 LINE L1 5668 6160 -1 18674 174 55 15 chr6 164369927 164370373 -18044869 + L1MA2 LINE L1 4286 5125 -2440 3188 167 18 24 chr6 164370371 164370784 -18044458 + L1MA2 LINE L1 6246 6660 -1064 * 2089 111 8 66 chr6 164370784 164371161 -18044081 + THE1A LTR MaLR 1 355 0 11140 101 18 3 chr6 164371161 164372716 -18042526 + THE1A-int LTR MaLR 1 1578 -2 2273 113 11 8 chr6 164372718 164373072 -18042170 + THE1A LTR MaLR 1 355 0 3188 167 18 24 chr6 164373072 164373627 -18041615 + L1MA2 LINE L1 6660 7212 -512 322 195 23 0 chr6 164373630 164373717 -18041525 + (TA)n Simple_repeat Simple_repeat 2 90 0 2927 130 60 2 chr6 164373718 164374203 -18041039 + L1MA2 LINE L1 7202 7714 -9 2791 81 33 10 chr6 164374307 164374323 -18040919 - MLT2A1 LTR ERVL -23 531 517 553 47 12 12 chr6 164374323 164374409 -18040833 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 2791 81 33 10 chr6 164374409 164374789 -18040453 - MLT2A1 LTR ERVL -37 517 3 7904 81 12 0 chr6 164374791 164375835 -18039407 - HERVL-A1 LTR ERVL 0 5654 4598 * 8098 70 32 0 chr6 164375833 164376863 -18038379 - HERVL-A1 LTR ERVL -1989 3665 2603 507 73 0 0 chr6 164376867 164376935 -18038307 - MLT2A1 LTR ERVL -376 68 1 1942 159 0 3 chr6 164377419 164377714 -18037528 + AluSx SINE Alu 1 294 -18 248 271 0 0 chr6 164378178 164378237 -18037005 + GA-rich Low_complexity Low_complexity 5 63 0 237 65 0 0 chr6 164378257 164378288 -18036954 + (GGGGA)n Simple_repeat Simple_repeat 5 35 0 1023 106 0 0 chr6 164378409 164378560 -18036682 + (TC)n Simple_repeat Simple_repeat 1 151 0 1803 118 0 0 chr6 164378561 164378823 -18036419 - AluSc SINE Alu 0 303 42 271 241 0 0 chr6 164379045 164379103 -18036139 - MIR SINE MIR -127 135 78 585 302 20 0 chr6 164379839 164379988 -18035254 - MIR3 SINE MIR -12 196 45 414 275 123 7 chr6 164380210 164380348 -18034894 - MIR SINE MIR -18 244 91 3652 61 77 0 chr6 164380804 164381297 -18033945 - L1PA8 LINE L1 -4 6168 5638 2431 155 3 10 chr6 164381911 164382351 -18032891 + Tigger2 DNA MER2_type 1 2718 0 262 292 144 51 chr6 164382946 164383182 -18032060 + MLT1K LTR MaLR 331 588 0 22 0 0 0 chr6 164383287 164383309 -18031933 + AT_rich Low_complexity Low_complexity 1 22 0 306 215 139 0 chr6 164384322 164384401 -18030841 + L2 LINE L2 3219 3308 -5 21 36 0 0 chr6 164385455 164385483 -18029759 + AT_rich Low_complexity Low_complexity 1 28 0 2370 82 7 0 chr6 164386040 164386345 -18028897 - AluY SINE Alu -4 307 1 422 215 93 19 chr6 164386608 164386715 -18028527 - FAM SINE Alu -9 40 1 508 76 0 0 chr6 164386716 164386782 -18028460 + LTR7 LTR ERV1 24 89 -361 15044 79 5 6 chr6 164386782 164388853 -18026389 + HERVH LTR ERV1 918 2987 -4726 902 135 20 0 chr6 164388847 164388995 -18026247 + HERVH LTR ERV1 3140 3290 -4423 * 3273 117 4 10 chr6 164388985 164389490 -18025752 + HERVH LTR ERV1 3492 3993 -3720 4130 141 21 8 chr6 164389492 164390145 -18025097 + HERVH LTR ERV1 4488 5149 -2564 1336 123 18 9 chr6 164390142 164390361 -18024881 + HERVH LTR ERV1 5597 5817 -1896 * 2433 90 48 13 chr6 164390363 164390740 -18024502 + HERVH LTR ERV1 7324 7713 0 1444 149 110 63 chr6 164390740 164391168 -18024074 + LTR7 LTR ERV1 1 448 -2 358 188 0 0 chr6 164391170 164391234 -18024008 - FAM SINE Alu -77 98 35 260 0 0 0 chr6 164391234 164391263 -18023979 + LTR32 LTR ERVL 420 448 -23 369 309 44 16 chr6 164391964 164392216 -18023026 + L1M4 LINE L1 3791 4049 -2097 1668 199 27 6 chr6 164392483 164392814 -18022428 + MLT2C1 LTR ERVL 1 338 -59 206 118 0 0 chr6 164392825 164392859 -18022383 + (GA)n Simple_repeat Simple_repeat 1 34 0 334 341 90 47 chr6 164393069 164393232 -18022010 + L1M4 LINE L1 4581 4736 -1410 6523 90 12 0 chr6 164393232 164394330 -18020912 - L1PA11 LINE L1 -1 6173 5069 334 341 90 47 chr6 164394330 164394679 -18020563 + L1M4 LINE L1 4736 5115 -1031 24 32 0 0 chr6 164394684 164394715 -18020527 + AT_rich Low_complexity Low_complexity 1 31 0 330 274 85 26 chr6 164395172 164395325 -18019917 + MIR3 SINE MIR 40 201 -7 22 0 0 0 chr6 164395550 164395572 -18019670 + AT_rich Low_complexity Low_complexity 1 22 0 590 134 10 0 chr6 164395639 164395736 -18019506 + MLT2B2 LTR ERVL 1 98 -417 * 627 183 193 11 chr6 164395734 164395897 -18019345 + MLT2B1 LTR ERVL 233 477 -43 1590 99 5 5 chr6 164397518 164397762 -18017480 + AluSg/x SINE Alu 70 313 0 262 317 33 25 chr6 164398092 164398212 -18017030 + MIR SINE MIR 25 145 -63 14412 148 13 9 chr6 164398673 164401317 -18013925 - L1PA11 LINE L1 0 6174 3508 243 0 0 0 chr6 164401317 164401344 -18013898 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 14412 148 13 9 chr6 164401344 164401995 -18013247 - L1PA11 LINE L1 -2666 3508 2861 241 138 17 17 chr6 164402400 164402458 -18012784 + CT-rich Low_complexity Low_complexity 1 58 0 2237 108 7 0 chr6 164403125 164403430 -18011812 - AluSx SINE Alu 0 312 6 2117 142 3 0 chr6 164404679 164404988 -18010254 - AluSx SINE Alu 0 312 3 23 0 0 0 chr6 164404992 164405015 -18010227 + AT_rich Low_complexity Low_complexity 1 23 0 1586 253 30 62 chr6 164405550 164406111 -18009131 - MER77 LTR ERV1 -8 597 55 2326 244 59 6 chr6 164406345 164407053 -18008189 - L1MB7 LINE L1 -11 6173 5428 2488 77 0 0 chr6 164407063 164407373 -18007869 - AluY SINE Alu -1 310 1 832 212 135 0 chr6 164408271 164408464 -18006778 + MER20 DNA MER1_type 1 219 0 403 275 29 65 chr6 164409332 164409470 -18005772 - LTR16C LTR ERVL -183 308 176 238 246 9 82 chr6 164409611 164409721 -18005521 + HAL1b LINE L1 787 888 -460 201 275 235 20 chr6 164410979 164411128 -18004114 + MER5A DNA MER1_type 7 187 -2 * 439 242 21 0 chr6 164411034 164411129 -18004113 - MER5A DNA MER1_type -77 112 16 23 54 0 0 chr6 164411222 164411259 -18003983 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 164411279 164411300 -18003942 + AT_rich Low_complexity Low_complexity 1 21 0 2575 86 3 3 chr6 164412621 164412972 -18002270 + L1PB2 LINE L1 5801 6151 0 229 263 21 32 chr6 164414047 164414142 -18001100 + L1MC4a LINE L1 4919 5012 -1134 709 245 0 18 chr6 164414159 164414322 -18000920 + AluJo SINE Alu 117 276 -36 231 36 0 0 chr6 164414331 164414359 -18000883 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1502 261 101 18 chr6 164414641 164414785 -18000457 + L1MC4a LINE L1 5343 5474 -2334 1950 126 0 4 chr6 164414785 164415063 -18000179 + AluSx SINE Alu 36 312 0 1502 261 101 18 chr6 164415063 164415461 -17999781 + L1MC4a LINE L1 5474 5930 -1878 455 292 87 85 chr6 164415539 164416090 -17999152 + L1MC4a LINE L1 6045 6596 -1212 1749 232 96 81 chr6 164416114 164416938 -17998304 + L1MC5 LINE L1 6740 7589 -372 2097 126 3 0 chr6 164416938 164417239 -17998003 + AluSc SINE Alu 1 302 -7 1749 232 96 81 chr6 164417239 164417600 -17997642 + L1MC5 LINE L1 7589 7943 -18 397 358 38 21 chr6 164417742 164417982 -17997260 - L2 LINE L2 -468 2846 2603 6840 64 6 1 chr6 164417983 164418875 -17996367 - L1PA7 LINE L1 -5 6149 5254 12424 99 4 5 chr6 164418880 164420676 -17994566 + L1PA7 LINE L1 3456 5249 -897 255 345 52 9 chr6 164420693 164420809 -17994433 - L2 LINE L2 -791 2523 2403 484 48 48 0 chr6 164421245 164421308 -17993934 - MSTB LTR MaLR -48 378 313 490 179 119 46 chr6 164421310 164421461 -17993781 + MER51B LTR ERV1 1 162 -215 * 2066 122 3 6 chr6 164421458 164421769 -17993473 + MER51B LTR ERV1 68 377 0 1219 185 141 7 chr6 164421772 164422048 -17993194 - MSTA LTR MaLR -115 313 1 1323 54 0 0 chr6 164422093 164422261 -17992981 + L1P LINE L1 5036 5203 -943 367 130 0 0 chr6 164422266 164422320 -17992922 - MSTB LTR MaLR -372 54 1 6161 169 67 15 chr6 164422320 164423712 -17991530 - MSTB-int LTR MaLR 0 1580 1 1097 159 70 23 chr6 164423712 164423891 -17991351 - MSTB LTR MaLR 0 426 234 3599 104 32 0 chr6 164423891 164424428 -17990814 + MER41A LTR ERV1 1 554 0 1097 159 70 23 chr6 164424428 164424462 -17990780 - MSTB LTR MaLR -192 234 203 2524 68 0 0 chr6 164425505 164425814 -17989428 + AluY SINE Alu 1 309 -2 387 41 0 0 chr6 164426074 164426123 -17989119 + (CA)n Simple_repeat Simple_repeat 1 49 0 1319 67 0 6 chr6 164427105 164427285 -17987957 + (TTC)n Simple_repeat Simple_repeat 1 179 0 485 125 34 0 chr6 164428181 164428269 -17986973 + L1MB1 LINE L1 6078 6168 0 1823 95 42 4 chr6 164429464 164429726 -17985516 - AluSc SINE Alu -14 295 24 303 247 43 0 chr6 164429741 164429834 -17985408 + L1ME4a LINE L1 5982 6078 -43 21 0 0 0 chr6 164429854 164429875 -17985367 + AT_rich Low_complexity Low_complexity 1 21 0 639 0 0 56 chr6 164430478 164430568 -17984674 + L1PA4 LINE L1 6071 6155 0 483 170 54 27 chr6 164432346 164432458 -17982784 + MER53 DNA DNA 1 115 -74 2237 84 3 39 chr6 164432794 164433102 -17982140 + AluSp SINE Alu 1 297 -16 203 0 37 0 chr6 164433992 164434019 -17981223 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 1654 123 77 5 chr6 164434963 164435383 -17979859 - MER51A LTR ERV1 -114 520 1 1145 98 46 0 chr6 164435407 164435581 -17979661 - L1MA2 LINE L1 0 6304 6123 1442 201 7 13 chr6 164436515 164436813 -17978429 - MER58B DNA MER1_type -9 332 37 240 336 15 7 chr6 164437669 164437806 -17977436 + MER103 DNA DNA 11 148 -18 180 0 0 0 chr6 164437825 164437845 -17977397 + (TG)n Simple_repeat Simple_repeat 2 21 0 29 0 0 0 chr6 164438466 164438495 -17976747 + AT_rich Low_complexity Low_complexity 1 29 0 667 291 119 39 chr6 164438629 164439440 -17975802 - L1ME3A LINE L1 -14 6156 5254 21 36 0 0 chr6 164439448 164439476 -17975766 + AT_rich Low_complexity Low_complexity 1 28 0 452 246 93 47 chr6 164439485 164439700 -17975542 - MLT1I LTR MaLR -7 402 178 259 325 32 26 chr6 164439702 164439856 -17975386 - MLT1J2 LTR MaLR -293 157 3 2282 99 3 0 chr6 164440206 164440500 -17974742 - AluSx SINE Alu -15 297 3 353 303 76 8 chr6 164441357 164441489 -17973753 - MIR SINE MIR -118 144 4 323 251 141 26 chr6 164442642 164442833 -17972409 - L1ME2 LINE L1 -284 5880 5665 5257 58 0 12 chr6 164442983 164443667 -17971575 + L1P LINE L1 96 771 -5375 * 9762 191 23 9 chr6 164443663 164446861 -17968381 - L1PA16 LINE L1 -25 6141 2903 1650 236 62 72 chr6 164447204 164447930 -17967312 - L1ME3 LINE L1 -30 6132 5414 1446 108 100 0 chr6 164448375 164448606 -17966636 + AluSx SINE Alu 40 293 -19 785 167 23 0 chr6 164448606 164448780 -17966462 + GA-rich Low_complexity Low_complexity 1 178 0 202 77 0 0 chr6 164448780 164448806 -17966436 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 823 239 26 47 chr6 164448986 164449220 -17966022 + MIR SINE MIR 2 230 -32 356 296 120 65 chr6 164449233 164449963 -17965279 - L1M4 LINE L1 -2677 3469 2682 1637 199 7 7 chr6 164450229 164450559 -17964683 - AluJo SINE Alu 0 312 3 28 61 0 0 chr6 164451751 164451800 -17963442 + AT_rich Low_complexity Low_complexity 1 49 0 1544 216 3 3 chr6 164452855 164453151 -17962091 - AluJo SINE Alu -16 296 1 297 0 0 0 chr6 164453539 164453572 -17961670 + (TG)n Simple_repeat Simple_repeat 2 34 0 2379 285 142 28 chr6 164454258 164455242 -17960000 + L2 LINE L2 1280 2437 -877 2047 99 0 11 chr6 164455242 164455514 -17959728 - AluSx SINE Alu -43 269 1 2379 285 142 28 chr6 164455514 164455773 -17959469 + L2 LINE L2 2437 2665 -649 497 307 140 36 chr6 164455777 164456283 -17958959 - MLT1H1 LTR MaLR 0 555 5 570 271 18 12 chr6 164456290 164456460 -17958782 + L2 LINE L2 2686 2856 -458 184 338 15 15 chr6 164456782 164456850 -17958392 - MIR SINE MIR -103 105 38 3444 178 82 6 chr6 164457725 164458428 -17956814 + Tigger2 DNA MER2_type 1 757 -1961 1399 139 4 73 chr6 164458482 164458755 -17956487 + Tigger2 DNA MER2_type 2464 2717 -1 1239 221 66 56 chr6 164459199 164459607 -17955635 + MLT2D LTR ERVL 1 412 -2 1896 14 0 0 chr6 164459694 164459903 -17955339 - AluY SINE Alu -2 309 101 1741 243 104 21 chr6 164459916 164460447 -17954795 + MER90 LTR ERV1 1 575 0 1760 266 64 11 chr6 164460996 164461530 -17953712 + L1MEc LINE L1 39 600 -5796 2634 246 55 18 chr6 164461599 164462546 -17952696 - L1MEc LINE L1 -2917 3298 2317 * 3491 251 47 22 chr6 164462533 164462986 -17952256 - L1MEc LINE L1 -5108 1288 848 2824 77 99 10 chr6 164462986 164463026 -17952216 - MLT2A2 LTR ERVL 0 453 418 369 0 0 0 chr6 164463026 164463067 -17952175 + (CA)n Simple_repeat Simple_repeat 2 42 0 2824 77 99 10 chr6 164463067 164463442 -17951800 - MLT2A2 LTR ERVL -35 418 1 3491 251 47 22 chr6 164463442 164464182 -17951060 - L1MEc LINE L1 -5548 848 36 386 350 92 39 chr6 164464804 164464977 -17950265 - L2 LINE L2 0 3313 3151 1867 156 0 14 chr6 164464977 164465290 -17949952 + AluSx SINE Alu 1 309 0 386 350 92 39 chr6 164465290 164465606 -17949636 - L2 LINE L2 -162 3151 2800 388 370 50 4 chr6 164465648 164465886 -17949356 - L2 LINE L2 -866 2448 2200 3642 184 25 165 chr6 164465887 164467302 -17947940 - MER52A LTR ERV1 -1 1754 538 2060 149 0 3 chr6 164467417 164467719 -17947523 + AluSx SINE Alu 1 301 -11 15054 159 15 17 chr6 164467719 164469857 -17945385 + L1MA2 LINE L1 2723 4864 -2859 1597 179 4 4 chr6 164469857 164470114 -17945128 + AluSx SINE Alu 1 257 -55 449 33 0 17 chr6 164470114 164470174 -17945068 + (GAAAA)n Simple_repeat Simple_repeat 1 59 0 15054 159 15 17 chr6 164470174 164473045 -17942197 + L1MA2 LINE L1 4862 7722 -1 310 338 68 21 chr6 164473063 164473297 -17941945 - L2 LINE L2 -1363 1951 1707 603 282 112 29 chr6 164473984 164474225 -17941017 + MIR SINE MIR 1 261 -1 1554 158 62 71 chr6 164476683 164477037 -17938205 - MLT1A1 LTR MaLR 0 365 15 214 298 97 26 chr6 164477475 164477589 -17937653 - L2 LINE L2 -87 3226 3105 726 296 44 41 chr6 164477676 164478041 -17937201 - MLT1H LTR MaLR -181 368 3 447 324 83 14 chr6 164478050 164478367 -17936875 - L2 LINE L2 -239 3074 2696 321 290 67 35 chr6 164478937 164479192 -17936050 + L1P LINE L1 4405 4667 -1479 1735 266 87 16 chr6 164479391 164480280 -17934962 + L1MC4a LINE L1 4889 5403 -743 198 135 0 0 chr6 164481053 164481090 -17934152 + L2 LINE L2 3113 3149 -164 396 282 46 15 chr6 164481152 164481283 -17933959 + L2 LINE L2 3179 3313 0 180 398 9 0 chr6 164481688 164481796 -17933446 + MIR SINE MIR 54 162 -100 2121 138 0 3 chr6 164482124 164482435 -17932807 + AluSx SINE Alu 3 312 0 1294 117 5 22 chr6 164482947 164483169 -17932073 - L1MA2 LINE L1 0 6304 6087 4073 151 39 28 chr6 164483217 164483298 -17931944 - L1MC1 LINE L1 -12 6321 6242 180 0 0 0 chr6 164483298 164483318 -17931924 + (CA)n Simple_repeat Simple_repeat 1 20 0 4073 151 39 28 chr6 164483318 164483723 -17931519 - L1MC1 LINE L1 -91 6242 5822 1817 159 47 0 chr6 164483723 164484019 -17931223 - AluJb SINE Alu -2 310 1 4073 151 39 28 chr6 164484019 164484284 -17930958 - L1MC1 LINE L1 -511 5822 5561 329 87 0 0 chr6 164484287 164484333 -17930909 - L1MC/D LINE L1 -637 5605 5560 697 186 38 13 chr6 164484333 164484569 -17930673 - Ricksha DNA DNA -13 3233 3052 299 87 22 0 chr6 164484568 164484614 -17930628 - Ricksha DNA DNA -1127 54 8 * 5227 212 33 26 chr6 164484627 164486256 -17928986 - L1MC/D LINE L1 -781 5563 3857 20703 168 23 12 chr6 164486424 164493033 -17922209 - L1 LINE L1 -876 6689 19 2461 107 28 3 chr6 164493627 164493990 -17921252 + THE1C LTR MaLR 1 372 -3 655 100 90 0 chr6 164493993 164494093 -17921149 + THE1C LTR MaLR 267 375 0 384 90 0 3 chr6 164494671 164494732 -17920510 + AluSq/x SINE Alu 79 129 -174 2133 124 0 19 chr6 164495438 164495752 -17919490 + AluSx SINE Alu 1 308 -4 402 292 58 35 chr6 164496191 164496362 -17918880 - MIR SINE MIR -5 257 83 1771 156 18 3 chr6 164496433 164496715 -17918527 - AluJo SINE Alu -24 288 3 477 325 153 29 chr6 164496758 164497137 -17918105 - L2 LINE L2 -840 2474 2049 2021 248 14 14 chr6 164497743 164498248 -17916994 + Charlie1a DNA MER1_type 1 505 -950 2344 84 0 13 chr6 164498248 164498559 -17916683 + AluY SINE Alu 1 307 -4 482 250 22 0 chr6 164498578 164498714 -17916528 + Charlie1a DNA MER1_type 1316 1454 -1 277 349 41 12 chr6 164499059 164499228 -17916014 - MIR SINE MIR -76 186 13 26 0 0 0 chr6 164500714 164500740 -17914502 + AT_rich Low_complexity Low_complexity 1 26 0 308 358 12 24 chr6 164500990 164501155 -17914087 + L3 LINE CR1 727 889 -688 222 257 162 0 chr6 164501187 164501261 -17913981 + L2 LINE L2 3178 3263 -9 366 320 63 29 chr6 164501434 164501609 -17913633 + L3 LINE CR1 1051 1231 -346 426 285 47 41 chr6 164501673 164501845 -17913397 - MIR SINE MIR -61 201 29 240 151 140 75 chr6 164501845 164501938 -17913304 + L3 LINE CR1 1282 1380 -197 321 278 181 14 chr6 164505467 164505611 -17909631 - MIR3 SINE MIR -3 205 38 207 162 0 0 chr6 164507504 164507541 -17907701 + (TA)n Simple_repeat Simple_repeat 1 37 0 219 152 0 0 chr6 164508086 164508132 -17907110 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 226 256 49 0 chr6 164508213 164508295 -17906947 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 25 65 0 0 chr6 164508504 164508550 -17906692 + AT_rich Low_complexity Low_complexity 1 46 0 1783 168 3 10 chr6 164508928 164509238 -17906004 + AluSx SINE Alu 1 308 -4 251 245 20 61 chr6 164510758 164510856 -17904386 + MIR3 SINE MIR 103 196 -12 494 269 55 89 chr6 164511023 164511350 -17903892 - MER76 LTR ERV -31 657 342 300 70 0 0 chr6 164511424 164511467 -17903775 + (TC)n Simple_repeat Simple_repeat 2 44 0 194 0 39 0 chr6 164511701 164511727 -17903515 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1831 173 35 9 chr6 164511765 164512112 -17903130 - MLT1A1 LTR MaLR 0 365 10 2997 207 16 49 chr6 164512889 164513557 -17901685 + MER82 DNA MER2_type 2 647 -6 2453 174 9 0 chr6 164513788 164514230 -17901012 - L1 LINE L1 -2291 3855 3410 4378 93 8 23 chr6 164514230 164514891 -17900351 + L1MA1 LINE L1 5642 6296 -6 22 35 0 0 chr6 164514893 164514922 -17900320 + AT_rich Low_complexity Low_complexity 1 29 0 5907 91 2 0 chr6 164515533 164516338 -17898904 + L1PA8 LINE L1 5362 6168 -4 1380 228 26 7 chr6 164516343 164516646 -17898596 - MER58B DNA MER1_type -32 309 1 541 273 117 0 chr6 164518025 164518075 -17897167 + MER5B DNA MER1_type 1 44 -134 2484 65 3 0 chr6 164518075 164518381 -17896861 + AluY SINE Alu 3 309 -2 541 273 117 0 chr6 164518381 164518484 -17896758 + MER5B DNA MER1_type 44 172 -6 250 209 0 0 chr6 164518491 164518534 -17896708 - MIR3 SINE MIR -49 159 117 764 118 0 59 chr6 164518750 164518886 -17896356 + L1MA2 LINE L1 6177 6304 0 2118 134 0 6 chr6 164519091 164519405 -17895837 + AluSx SINE Alu 1 312 0 2363 98 0 0 chr6 164520100 164520407 -17894835 - AluSc SINE Alu -2 307 1 364 237 67 59 chr6 164521225 164521360 -17893882 - L2 LINE L2 -20 3293 3158 339 136 0 0 chr6 164522677 164522736 -17892506 + (CAT)n Simple_repeat Simple_repeat 1 59 0 328 371 14 7 chr6 164522808 164522948 -17892294 - MIR SINE MIR -74 188 48 203 220 40 0 chr6 164523592 164523642 -17891600 + L2 LINE L2 3193 3244 -69 2402 120 11 3 chr6 164525456 164525824 -17889418 + L1PA15 LINE L1 5794 6164 -1 33 43 0 0 chr6 164527379 164527426 -17887816 + AT_rich Low_complexity Low_complexity 1 47 0 9345 230 38 22 chr6 164527484 164529136 -17886106 - L1MB3 LINE L1 -27 6392 4768 2148 112 0 0 chr6 164529136 164529422 -17885820 - AluSc SINE Alu -12 297 12 9345 230 38 22 chr6 164529422 164530474 -17884768 - L1MB3 LINE L1 -1651 4768 3735 848 247 49 95 chr6 164530474 164530883 -17884359 + MLT1B LTR MaLR 1 390 0 9345 230 38 22 chr6 164530883 164531880 -17883362 - L1MB3 LINE L1 -2684 3735 2615 824 176 7 0 chr6 164531897 164532050 -17883192 - L1MB3 LINE L1 -4509 1875 1722 352 116 43 0 chr6 164532055 164532124 -17883118 - Charlie5 DNA MER1_type -123 2489 2418 4701 172 42 15 chr6 164532136 164533232 -17882010 - L1MA8 LINE L1 -42 6249 5111 2283 93 0 0 chr6 164533232 164533522 -17881720 - AluSc SINE Alu -19 290 1 4701 172 42 15 chr6 164533522 164533789 -17881453 - L1MA8 LINE L1 -1180 5111 4853 3165 194 17 20 chr6 164533789 164534432 -17880810 - L1MB3 LINE L1 -5727 657 17 245 294 120 11 chr6 164534451 164534543 -17880699 + MIR SINE MIR 161 262 0 1142 248 32 67 chr6 164535493 164536035 -17879207 - MER90 LTR ERV1 0 575 2 1813 146 40 0 chr6 164537709 164537984 -17877258 + AluSx SINE Alu 4 289 -23 871 250 14 19 chr6 164538114 164538326 -17876916 + MIR SINE MIR 39 249 -13 364 328 111 48 chr6 164538326 164538463 -17876779 + L1MEd LINE L1 895 1022 -1468 2100 134 0 3 chr6 164538463 164538776 -17876466 + AluSx SINE Alu 1 312 0 364 328 111 48 chr6 164538776 164539209 -17876033 + L1MEd LINE L1 1022 1589 -901 238 268 0 0 chr6 164539238 164539309 -17875933 + HAL1 LINE L1 2315 2385 -122 1788 137 4 0 chr6 164539438 164539694 -17875548 - AluSx SINE Alu -12 300 44 459 273 42 3 chr6 164539779 164539925 -17875317 + MIR SINE MIR 19 167 -54 232 222 71 10 chr6 164540017 164540116 -17875126 + L1ME4a LINE L1 6005 6109 -12 341 302 112 17 chr6 164540342 164540521 -17874721 + L1ME1 LINE L1 5276 5471 -2337 311 114 0 0 chr6 164540521 164540565 -17874677 + Alu SINE Alu 1 44 -259 265 272 97 70 chr6 164540699 164540813 -17874429 + L2 LINE L2 1221 1337 -1977 371 299 187 12 chr6 164540990 164541231 -17874011 + L2 LINE L2 1397 1679 -1635 885 152 0 0 chr6 164541271 164541403 -17873839 - AluSq/x SINE Alu -181 132 1 701 305 162 33 chr6 164541415 164541434 -17873808 + L2 LINE L2 1693 1708 -1606 2205 120 0 0 chr6 164541434 164541722 -17873520 + AluSx SINE Alu 1 291 -21 222 37 0 0 chr6 164541722 164541749 -17873493 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 2205 120 0 0 chr6 164541749 164541760 -17873482 + AluSx SINE Alu 290 300 -12 701 305 162 33 chr6 164541760 164542346 -17872896 + L2 LINE L2 1708 2376 -938 1824 163 3 26 chr6 164542574 164542880 -17872362 + AluJb SINE Alu 1 299 -13 961 223 55 78 chr6 164543508 164543700 -17871542 - MER69 DNA AcHobo -21 2505 2310 836 220 0 6 chr6 164543700 164543859 -17871383 - FRAM SINE Alu -7 159 2 961 223 55 78 chr6 164543859 164544178 -17871064 - MER69 DNA AcHobo -216 2310 2006 749 282 128 11 chr6 164544169 164544520 -17870722 - MER69 DNA AcHobo -1646 880 489 * 2419 70 0 10 chr6 164545207 164545521 -17869721 + AluY SINE Alu 1 311 0 220 149 30 60 chr6 164546269 164546336 -17868906 + T-rich Low_complexity Low_complexity 4 68 0 2649 39 0 7 chr6 164547646 164547955 -17867287 + AluY SINE Alu 1 307 -4 315 0 0 0 chr6 164548903 164548938 -17866304 + (CA)n Simple_repeat Simple_repeat 2 36 0 1357 133 205 0 chr6 164549874 164550123 -17865119 - AluSq SINE Alu -3 300 1 486 142 44 18 chr6 164550409 164550522 -17864720 - L1MA8 LINE L1 0 6291 6176 21 0 0 0 chr6 164550596 164550617 -17864625 + AT_rich Low_complexity Low_complexity 1 21 0 292 284 37 52 chr6 164551657 164551791 -17863451 - MLT1K LTR MaLR -415 173 42 1392 231 18 79 chr6 164551938 164552396 -17862846 + L1ME1 LINE L1 5630 6048 -118 612 270 143 0 chr6 164552396 164552592 -17862650 - MER58A DNA MER1_type 0 224 1 1392 231 18 79 chr6 164552592 164552700 -17862542 + L1ME1 LINE L1 6048 6161 -5 1588 211 7 3 chr6 164553296 164553594 -17861648 + AluJo SINE Alu 7 305 -7 29 78 0 0 chr6 164556042 164556106 -17859136 + AT_rich Low_complexity Low_complexity 1 64 0 21 71 0 0 chr6 164556338 164556380 -17858862 + AT_rich Low_complexity Low_complexity 1 42 0 286 70 0 0 chr6 164556990 164557033 -17858209 - MADE1 DNA Mariner -37 43 1 1490 249 92 20 chr6 164558379 164558881 -17856361 - MLT1H LTR MaLR -4 545 8 209 232 89 0 chr6 164558920 164558976 -17856266 + L2 LINE L2 3162 3222 -50 2319 114 3 0 chr6 164558995 164559302 -17855940 + AluSq SINE Alu 1 308 -5 2029 133 10 10 chr6 164560037 164560345 -17854897 - AluSx SINE Alu -4 308 1 586 65 0 0 chr6 164560454 164560531 -17854711 + MADE1 DNA Mariner 3 79 -1 264 264 36 93 chr6 164560646 164560786 -17854456 - MIR3 SINE MIR -73 135 4 240 35 0 0 chr6 164561572 164561601 -17853641 + (TG)n Simple_repeat Simple_repeat 1 29 0 281 226 108 39 chr6 164561831 164561933 -17853309 - MIR SINE MIR -89 173 65 859 167 0 0 chr6 164561933 164562065 -17853177 + FLAM_C SINE Alu 1 132 -11 23 33 0 0 chr6 164562065 164562095 -17853147 + AT_rich Low_complexity Low_complexity 1 30 0 1507 204 3 21 chr6 164562983 164563268 -17851974 + AluJb SINE Alu 1 280 -32 468 51 0 0 chr6 164563270 164563329 -17851913 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 830 144 29 6 chr6 164563340 164563514 -17851728 + GA-rich Low_complexity Low_complexity 1 178 0 249 162 0 0 chr6 164563518 164563555 -17851687 + polypurine Low_complexity Low_complexity 4 40 0 294 206 0 0 chr6 164563609 164563672 -17851570 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 437 183 45 0 chr6 164563812 164564270 -17850972 + (CATAT)n Simple_repeat Simple_repeat 1 478 0 28 71 0 0 chr6 164564833 164564889 -17850353 + AT_rich Low_complexity Low_complexity 1 56 0 242 125 21 0 chr6 164564901 164564949 -17850293 + (TA)n Simple_repeat Simple_repeat 1 49 0 211 379 0 23 chr6 164565608 164565695 -17849547 - MIR3 SINE MIR -16 192 108 21 0 0 0 chr6 164565836 164565857 -17849385 + AT_rich Low_complexity Low_complexity 1 21 0 1524 192 4 0 chr6 164565926 164566197 -17849045 - AluJb SINE Alu -13 299 28 368 287 20 20 chr6 164566224 164566374 -17848868 + MIR SINE MIR 60 209 -53 567 167 25 17 chr6 164566569 164566689 -17848553 - MER20 DNA MER1_type -68 151 31 207 300 107 64 chr6 164566718 164566858 -17848384 - MIR3 SINE MIR -45 163 18 325 360 113 14 chr6 164567249 164567541 -17847701 + L3 LINE CR1 211 531 -1046 3378 80 9 0 chr6 164567554 164568017 -17847225 - MER41A LTR ERV1 -87 467 1 13287 157 71 34 chr6 164568019 164571178 -17844064 - MER41A-int LTR ERV1 -4 5942 2667 315 109 55 0 chr6 164571174 164571229 -17844013 - MER41A-int LTR ERV1 -3726 2220 2163 * 3965 145 88 7 chr6 164571225 164571938 -17843304 - MER41A-int LTR ERV1 -3932 2014 1360 333 0 0 0 chr6 164571938 164571975 -17843267 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 3965 145 88 7 chr6 164571975 164572744 -17842498 - MER41A-int LTR ERV1 -4586 1360 226 552 325 262 27 chr6 164572886 164573337 -17841905 + L3 LINE CR1 832 1418 -159 351 211 0 0 chr6 164573337 164573413 -17841829 - L1MA10 LINE L1 -6 6328 6253 552 325 262 27 chr6 164573413 164573472 -17841770 + L3 LINE CR1 1418 1462 -115 303 28 0 0 chr6 164573742 164573778 -17841464 + (TC)n Simple_repeat Simple_repeat 2 37 0 * 369 0 0 0 chr6 164573777 164573818 -17841424 + (TG)n Simple_repeat Simple_repeat 2 42 0 187 400 0 13 chr6 164574416 164574491 -17840751 + MIR SINE MIR 20 93 -115 2524 65 3 0 chr6 164574591 164574901 -17840341 + AluY SINE Alu 1 311 0 220 333 56 11 chr6 164575475 164575565 -17839677 + MIR3 SINE MIR 91 184 -24 2294 60 4 0 chr6 164575737 164576049 -17839193 - AluY SINE Alu 0 313 1 539 315 72 10 chr6 164576229 164576521 -17838721 - LTR40b LTR ERVL -2 460 151 751 274 40 12 chr6 164576723 164576971 -17838271 - HERVL40 LTR ERVL -25 5505 5251 289 178 82 14 chr6 164577079 164577152 -17838090 - HERVL40 LTR ERVL -278 5252 5175 1244 262 98 52 chr6 164577345 164577906 -17837336 - HERVL40 LTR ERVL -356 5174 4588 331 169 17 0 chr6 164577934 164577993 -17837249 - HERVL40 LTR ERVL -2874 2656 2597 256 340 22 32 chr6 164578068 164578253 -17836989 - HERVL40 LTR ERVL -3195 1828 1646 627 372 60 14 chr6 164578441 164578858 -17836384 - HERVL40 LTR ERVL -3417 2113 1678 2053 151 0 0 chr6 164579247 164579551 -17835691 + AluJb SINE Alu 6 309 -3 2128 145 7 0 chr6 164580289 164580599 -17834643 + AluSx SINE Alu 1 312 0 525 242 71 44 chr6 164581331 164581582 -17833660 - LTR40a LTR ERVL -39 480 163 276 30 0 0 chr6 164581843 164581876 -17833366 + (TG)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr6 164581934 164581956 -17833286 + AT_rich Low_complexity Low_complexity 1 22 0 497 71 155 0 chr6 164586810 164586894 -17828348 - MER41B LTR ERV1 0 635 539 1120 113 16 16 chr6 164586916 164587102 -17828140 - MER61E LTR ERV1 -43 526 341 349 143 52 26 chr6 164587287 164587364 -17827878 - LTR25 LTR ERV1 -461 333 255 3742 95 7 0 chr6 164587503 164588041 -17827201 - MER41B LTR ERV1 -93 542 1 2880 10 0 0 chr6 164589775 164590086 -17825156 - AluYa5 SINE Alu 0 311 1 2182 97 10 0 chr6 164590815 164591105 -17824137 + AluSg SINE Alu 2 294 -16 3745 62 47 41 chr6 164592996 164593483 -17821759 - LTR2B LTR ERV1 0 490 1 306 0 0 0 chr6 164593837 164593871 -17821371 + (CA)n Simple_repeat Simple_repeat 1 34 0 2410 83 7 0 chr6 164594150 164594452 -17820790 - AluY SINE Alu -7 304 1 22 0 0 0 chr6 164596198 164596220 -17819022 + AT_rich Low_complexity Low_complexity 1 22 0 2587 68 0 0 chr6 164596824 164597132 -17818110 + AluY SINE Alu 1 308 -3 182 337 11 34 chr6 164597237 164597326 -17817916 + L2 LINE L2 2672 2758 -556 584 259 193 27 chr6 164597355 164597609 -17817633 - L1ME LINE L1 -297 5824 5526 766 265 110 7 chr6 164597617 164597908 -17817334 - L1ME LINE L1 -1235 4911 4591 210 385 10 0 chr6 164598026 164598130 -17817112 - L2 LINE L2 -520 2794 2690 2172 113 0 3 chr6 164599171 164599462 -17815780 + AluSx SINE Alu 1 290 -22 317 159 0 0 chr6 164599462 164599525 -17815717 + (TA)n Simple_repeat Simple_repeat 1 63 0 353 274 103 29 chr6 164600942 164601117 -17814125 - MIR SINE MIR 0 262 75 21 36 0 0 chr6 164601366 164601394 -17813848 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr6 164601443 164601485 -17813757 + AT_rich Low_complexity Low_complexity 1 42 0 198 355 66 0 chr6 164601958 164602034 -17813208 - L2 LINE L2 -45 3227 3147 234 290 253 6 chr6 164602064 164602226 -17813016 + MIR SINE MIR 11 212 -50 350 279 7 66 chr6 164602332 164602468 -17812774 + MER5B DNA MER1_type 30 157 -21 4519 132 29 13 chr6 164602543 164603223 -17812019 + LTR8 LTR ERV1 1 691 0 2318 99 3 0 chr6 164604312 164604614 -17810628 - AluSx SINE Alu -9 303 1 1770 151 6 25 chr6 164605453 164605803 -17809439 - MER4A LTR ERV1 0 664 263 528 146 31 10 chr6 164605803 164605899 -17809343 - MER4A LTR ERV1 -566 98 1 3555 188 61 14 chr6 164606123 164606824 -17808418 + MER50 LTR ERV1 1 734 0 206 349 51 23 chr6 164607183 164607358 -17807884 + L2 LINE L2 2875 3054 -218 735 153 0 36 chr6 164607562 164607699 -17807543 + MSTC LTR MaLR 1 132 -296 313 256 13 26 chr6 164607726 164607804 -17807438 + L1MDa LINE L1 4 80 -6460 6054 219 33 42 chr6 164607818 164608449 -17806793 + L1M4 LINE L1 3155 3790 -2356 2398 93 0 3 chr6 164608449 164608760 -17806482 + AluSq SINE Alu 1 310 -3 6054 219 33 42 chr6 164608760 164609978 -17805264 + L1M4 LINE L1 3790 4987 -1159 2166 133 0 0 chr6 164610102 164610404 -17804838 + AluSx SINE Alu 1 302 -10 738 299 67 64 chr6 164610780 164611231 -17804011 - LTR16A1 LTR ERVL 0 457 6 1851 314 86 23 chr6 164611541 164612495 -17802747 - HERV16 LTR ERVL -606 5158 4145 701 282 109 42 chr6 164612856 164613070 -17802172 - HERV16 LTR ERVL -2957 2039 1794 2671 113 8 19 chr6 164613070 164613449 -17801793 - THE1C LTR MaLR 0 375 1 701 282 109 42 chr6 164613449 164613564 -17801678 - HERV16 LTR ERVL -3202 1794 1688 279 79 0 0 chr6 164613582 164613620 -17801622 + (TG)n Simple_repeat Simple_repeat 2 39 0 207 0 0 0 chr6 164613620 164613643 -17801599 + (GA)n Simple_repeat Simple_repeat 2 24 0 1212 328 67 58 chr6 164613756 164614914 -17800328 - HERV16 LTR ERVL -3509 1487 319 1269 201 69 67 chr6 164615189 164615623 -17799619 - LTR16A1 LTR ERVL -18 439 5 1917 122 37 10 chr6 164615876 164616171 -17799071 + AluSx SINE Alu 1 303 -9 180 103 0 0 chr6 164616171 164616195 -17799047 + (GA)n Simple_repeat Simple_repeat 1 24 0 1087 72 6 28 chr6 164616198 164616378 -17798864 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1703 181 0 28 chr6 164616702 164617022 -17798220 - AluJo SINE Alu 0 312 2 770 224 256 15 chr6 164617231 164617386 -17797856 + MLT1D LTR MaLR 1 117 -388 2240 100 0 3 chr6 164617386 164617686 -17797556 + AluSx SINE Alu 1 299 -13 770 224 256 15 chr6 164617686 164617927 -17797315 + MLT1D LTR MaLR 117 503 -2 22 35 0 0 chr6 164618699 164618728 -17796514 + AT_rich Low_complexity Low_complexity 1 29 0 2063 102 57 0 chr6 164619499 164619782 -17795460 + AluSx SINE Alu 1 299 -13 185 0 40 0 chr6 164622066 164622091 -17793151 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 212 250 162 15 chr6 164624205 164624273 -17790969 - MIR SINE MIR -89 119 42 26 64 0 0 chr6 164624464 164624511 -17790731 + AT_rich Low_complexity Low_complexity 1 47 0 2279 108 6 13 chr6 164625183 164625497 -17789745 - AluSx SINE Alu 0 312 1 229 297 27 14 chr6 164625717 164625791 -17789451 + L2 LINE L2 3193 3267 -5 2843 262 107 50 chr6 164625834 164627207 -17788035 + L2 LINE L2 1218 2668 -646 1027 288 61 57 chr6 164627175 164627668 -17787574 + L2 LINE L2 2819 3313 0 * 337 125 12 25 chr6 164627786 164627866 -17787376 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 24 77 0 0 chr6 164628136 164628188 -17787054 + AT_rich Low_complexity Low_complexity 1 52 0 295 230 66 82 chr6 164629128 164629324 -17785918 - L1ME3A LINE L1 -15 6155 5963 1870 248 80 30 chr6 164629610 164630175 -17785067 + MLT1E LTR MaLR 1 593 0 282 197 16 16 chr6 164630664 164630725 -17784517 + L2 LINE L2 3248 3308 -5 23 0 0 0 chr6 164630870 164630893 -17784349 + AT_rich Low_complexity Low_complexity 1 23 0 209 355 66 0 chr6 164631577 164631653 -17783589 - L2 LINE L2 -38 3234 3154 563 174 31 0 chr6 164632186 164632284 -17782958 + MLT1C LTR MaLR 349 449 -18 1301 203 142 7 chr6 164632290 164632571 -17782671 - MLT1C LTR MaLR -122 345 27 2211 126 0 0 chr6 164632588 164632890 -17782352 - AluSq SINE Alu -11 302 1 315 53 0 0 chr6 164632890 164632928 -17782314 - MLT1C LTR MaLR -426 41 4 993 157 44 117 chr6 164632932 164633062 -17782180 - MLT1C-int LTR MaLR 0 1371 1270 1912 132 4 4 chr6 164633062 164633342 -17781900 + AluSx SINE Alu 1 280 -32 993 157 44 117 chr6 164633342 164633485 -17781757 - MLT1C-int LTR MaLR -101 1270 1118 196 213 64 0 chr6 164633485 164633532 -17781710 + MER5A DNA MER1_type 140 189 0 399 330 57 43 chr6 164633638 164633917 -17781325 + MLT1K LTR MaLR 55 337 -251 1238 159 21 1 chr6 164634633 164634848 -17780394 + L1MB8 LINE L1 5340 5566 -601 1124 166 0 0 chr6 164634848 164635023 -17780219 - FRAM SINE Alu -6 170 1 3006 176 36 23 chr6 164635028 164635635 -17779607 + L1MB8 LINE L1 5562 6176 -2 37515 93 13 10 chr6 164636155 164642283 -17772959 + L1PA6 LINE L1 11 6152 -2 465 206 171 11 chr6 164643820 164643971 -17771271 - MER5A DNA MER1_type -7 182 4 261 0 0 0 chr6 164644370 164644399 -17770843 + (TA)n Simple_repeat Simple_repeat 1 29 0 25 31 0 0 chr6 164645145 164645177 -17770065 + AT_rich Low_complexity Low_complexity 1 32 0 219 323 32 0 chr6 164645278 164645371 -17769871 - MIR SINE MIR -4 258 163 217 260 40 0 chr6 164645412 164645462 -17769780 - MIR SINE MIR -206 56 5 341 93 19 0 chr6 164645986 164646040 -17769202 + L1PA8 LINE L1 6109 6163 -9 2349 96 0 0 chr6 164646961 164647262 -17767980 - AluY SINE Alu -10 301 1 297 266 83 0 chr6 164647344 164647453 -17767789 + L1ME3A LINE L1 4492 4609 -1537 1884 153 37 0 chr6 164647602 164647902 -17767340 + AluSx SINE Alu 1 311 -1 484 190 138 0 chr6 164647947 164648063 -17767179 - L1MA9 LINE L1 -157 6155 6024 364 326 29 64 chr6 164648237 164648475 -17766767 + L1ME3A LINE L1 5682 5926 -236 186 209 0 0 chr6 164648495 164648538 -17766704 + (TA)n Simple_repeat Simple_repeat 2 44 0 1156 92 41 31 chr6 164649653 164649848 -17765394 + MER30 DNA MER1_type 1 197 -33 1889 288 85 39 chr6 164649902 164650530 -17764712 + L2 LINE L2 1997 2595 -718 2612 55 0 0 chr6 164650530 164650839 -17764403 - AluY SINE Alu -2 309 1 1889 288 85 39 chr6 164650839 164651469 -17763773 + L2 LINE L2 2595 3312 -1 329 301 0 121 chr6 164651687 164651860 -17763382 + MIR SINE MIR 14 165 -97 623 263 67 76 chr6 164651916 164652623 -17762619 + L1ME3A LINE L1 4045 4744 -1402 518 324 51 17 chr6 164652864 164653157 -17762085 + L1ME3A LINE L1 5045 5347 -799 570 253 61 20 chr6 164653188 164653424 -17761818 + L1ME3A LINE L1 5450 5702 -468 261 200 43 0 chr6 164653421 164653491 -17761751 + L1MC2 LINE L1 5184 5256 -890 * 898 130 27 94 chr6 164653495 164653670 -17761572 + L1MA6 LINE L1 6084 6242 -58 1935 92 92 0 chr6 164653670 164653941 -17761301 + AluSx SINE Alu 1 296 -16 898 130 27 94 chr6 164653941 164653988 -17761254 + L1MA6 LINE L1 6242 6291 -9 273 163 62 12 chr6 164654234 164654314 -17760928 + L1MC2 LINE L1 5283 5366 -2419 5146 145 13 43 chr6 164654329 164654827 -17760415 + L1MC2 LINE L1 5334 5846 -498 1810 80 0 0 chr6 164654827 164655052 -17760190 + AluY SINE Alu 70 294 -17 5146 145 13 43 chr6 164655052 164655376 -17759866 + L1MC2 LINE L1 5846 6121 -223 2243 93 0 0 chr6 164655376 164655695 -17759547 + AluSx SINE Alu 2 320 0 5146 145 13 43 chr6 164655695 164655905 -17759337 + L1MC2 LINE L1 6121 6336 -8 419 261 58 0 chr6 164655909 164656047 -17759195 + L1ME3A LINE L1 5689 5834 -336 262 335 32 13 chr6 164656099 164656254 -17758988 - L1MC/D LINE L1 -2134 5651 5494 378 61 0 0 chr6 164656302 164656351 -17758891 + (TG)n Simple_repeat Simple_repeat 2 50 0 5727 81 36 24 chr6 164656470 164657493 -17757749 + L1PB1 LINE L1 5106 6150 -1 226 237 34 0 chr6 164658020 164658079 -17757163 - MER97a DNA MER1_type? 0 894 834 2231 94 3 0 chr6 164658108 164658396 -17756846 + AluSp SINE Alu 8 296 -17 2573 71 0 0 chr6 164659119 164659430 -17755812 - AluY SINE Alu 0 311 1 2369 101 0 0 chr6 164659775 164660073 -17755169 - AluSg SINE Alu -12 298 1 622 327 83 21 chr6 164662085 164662412 -17752830 - L3 LINE CR1 -119 1458 1112 312 27 0 0 chr6 164662611 164662648 -17752594 + (CA)n Simple_repeat Simple_repeat 2 38 0 2122 148 0 0 chr6 164664422 164664727 -17750515 + AluSx SINE Alu 1 305 -7 1914 130 46 30 chr6 164664857 164665226 -17750016 + THE1C LTR MaLR 1 375 0 2278 118 0 0 chr6 164665596 164665901 -17749341 + AluSx SINE Alu 1 305 -7 271 331 23 15 chr6 164667197 164667327 -17747915 + L2 LINE L2 2966 3096 -176 379 197 0 0 chr6 164667374 164667445 -17747797 + Tigger2 DNA MER2_type 1 71 -2647 766 212 17 39 chr6 164667482 164667661 -17747581 - MER8 DNA MER2_type -64 175 1 207 108 27 0 chr6 164668339 164668376 -17746866 + A-rich Low_complexity Low_complexity 3 40 0 203 226 16 65 chr6 164668530 164668592 -17746650 + MIR SINE MIR 41 99 -109 189 364 0 0 chr6 164668598 164668664 -17746578 + MIR SINE MIR 46 111 -97 * 484 305 119 44 chr6 164668662 164669257 -17745985 + L2 LINE L2 2615 3249 -64 2233 126 0 0 chr6 164669296 164669589 -17745653 + AluSq SINE Alu 1 293 -20 23 33 0 0 chr6 164669610 164669640 -17745602 + AT_rich Low_complexity Low_complexity 1 30 0 248 224 60 43 chr6 164669901 164670017 -17745225 + LTR16A1 LTR ERVL 26 143 -314 272 354 62 38 chr6 164670626 164671159 -17744083 - L2 LINE L2 -181 3091 2550 562 111 11 11 chr6 164671552 164671642 -17743600 - AluJb SINE Alu -179 133 44 1024 272 140 30 chr6 164671847 164672619 -17742623 + L2 LINE L2 2460 3313 0 1656 198 24 0 chr6 164673351 164673644 -17741598 + AluJb SINE Alu 1 300 -12 231 152 0 0 chr6 164674386 164674432 -17740810 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 2375 82 23 0 chr6 164675117 164675421 -17739821 + AluY SINE Alu 1 311 0 355 284 90 15 chr6 164675421 164675555 -17739687 + MIR SINE MIR 24 167 -95 429 143 13 0 chr6 164675720 164675797 -17739445 + MADE1 DNA Mariner 2 79 -1 261 217 52 70 chr6 164675888 164676003 -17739239 + L1MB5 LINE L1 5318 5430 -734 244 240 67 13 chr6 164676008 164676083 -17739159 + MIR SINE MIR 159 237 -25 2127 97 19 19 chr6 164679311 164679622 -17735620 + AluSq SINE Alu 2 312 -1 387 277 100 43 chr6 164679785 164680225 -17735017 + L1MC/D LINE L1 5313 5777 -2031 2381 92 0 0 chr6 164680571 164680864 -17734378 + AluSg SINE Alu 1 293 -17 396 0 0 0 chr6 164683969 164684013 -17731229 + (TG)n Simple_repeat Simple_repeat 2 45 0 261 333 29 0 chr6 164684134 164684239 -17731003 + L2 LINE L2 3198 3305 -8 1782 113 71 4 chr6 164684359 164684647 -17730595 + AluSx SINE Alu 1 306 0 2471 74 0 3 chr6 164685575 164685887 -17729355 + AluY SINE Alu 1 311 0 219 272 122 39 chr6 164686493 164686673 -17728569 + MIR3 SINE MIR 2 196 -12 1884 171 0 10 chr6 164688408 164688718 -17726524 + AluSx SINE Alu 1 307 -5 987 193 61 5 chr6 164689023 164689235 -17726007 - MER46A DNA MER2_type 0 236 13 2554 179 27 8 chr6 164689235 164689754 -17725488 + L1MB5 LINE L1 5646 6174 0 2518 61 3 0 chr6 164690381 164690691 -17724551 + AluY SINE Alu 1 311 0 1777 171 33 7 chr6 164690868 164691172 -17724070 - AluJb SINE Alu 0 312 1 211 254 0 28 chr6 164692936 164693007 -17722235 + A-rich Low_complexity Low_complexity 5 73 0 2511 61 3 0 chr6 164693085 164693395 -17721847 + AluY SINE Alu 1 311 0 324 64 0 0 chr6 164694815 164694862 -17720380 + (CA)n Simple_repeat Simple_repeat 1 47 0 2251 102 0 3 chr6 164696075 164696368 -17718874 - AluSc SINE Alu -17 292 1 413 276 132 42 chr6 164696377 164696710 -17718532 - MLT1J1 LTR MaLR -77 369 7 23 0 0 0 chr6 164696820 164696843 -17718399 + AT_rich Low_complexity Low_complexity 1 23 0 2257 89 4 0 chr6 164697161 164697482 -17717760 + AluSp SINE Alu 2 323 0 2336 99 0 0 chr6 164698265 164698559 -17716683 - AluSg SINE Alu -16 294 1 24 0 0 0 chr6 164698605 164698629 -17716613 + AT_rich Low_complexity Low_complexity 1 24 0 1640 128 75 4 chr6 164698852 164699117 -17716125 - AluJo SINE Alu -28 284 1 297 374 29 7 chr6 164699130 164699269 -17715973 - L2 LINE L2 -541 2773 2632 640 340 62 59 chr6 164700885 164701849 -17713393 + L2 LINE L2 1907 2873 -441 2365 87 0 28 chr6 164701895 164702216 -17713026 + AluSx SINE Alu 1 312 0 29 37 0 19 chr6 164702387 164702417 -17712825 + AT_rich Low_complexity Low_complexity 1 31 -22 1882 159 7 0 chr6 164702417 164702706 -17712536 + AluJb SINE Alu 1 291 -21 29 37 0 19 chr6 164702706 164702729 -17712513 + AT_rich Low_complexity Low_complexity 31 53 0 195 129 0 0 chr6 164703030 164703061 -17712181 + (TCC)n Simple_repeat Simple_repeat 1 31 0 902 133 0 30 chr6 164703165 164703300 -17711942 + AluJo SINE Alu 2 132 -170 839 194 0 12 chr6 164703718 164703888 -17711354 + AluJo SINE Alu 134 301 -11 439 292 96 78 chr6 164703929 164704251 -17710991 + L2 LINE L2 2945 3272 0 311 287 80 58 chr6 164706899 164707087 -17708155 - L3b LINE CR1 -134 1449 1258 21 0 0 0 chr6 164707165 164707186 -17708056 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr6 164707200 164707232 -17708010 + (TG)n Simple_repeat Simple_repeat 2 33 0 355 286 74 40 chr6 164707514 164707689 -17707553 + MIR SINE MIR 5 185 -77 396 266 124 0 chr6 164709696 164709809 -17705433 + MER63 DNA MER1_type 1 753 -309 638 228 26 0 chr6 164710162 164710276 -17704966 + FLAM_C SINE Alu 1 117 -16 557 247 37 17 chr6 164710342 164710515 -17704727 - MIR SINE MIR -31 231 56 316 285 23 23 chr6 164710653 164710783 -17704459 + GA-rich Low_complexity Low_complexity 4 133 0 346 370 59 18 chr6 164710880 164711218 -17704024 - L2 LINE L2 -957 2357 2006 239 274 32 27 chr6 164711287 164711473 -17703769 + AluSg SINE Alu 1 187 -113 1717 132 22 0 chr6 164711686 164711958 -17703284 + AluSg SINE Alu 31 308 -2 347 313 34 7 chr6 164711964 164712111 -17703131 - L2 LINE L2 -1404 1910 1760 791 197 0 0 chr6 164712462 164712594 -17702648 - FLAM_C SINE Alu -1 132 1 692 298 68 20 chr6 164712671 164713024 -17702218 - L1ME3A LINE L1 -295 5858 5489 410 304 172 30 chr6 164713094 164713485 -17701757 - L1ME3A LINE L1 -2982 3147 2688 1888 145 65 57 chr6 164713485 164713857 -17701385 - THE1C LTR MaLR 0 375 1 410 304 172 30 chr6 164713857 164713896 -17701346 - L1ME3A LINE L1 -3441 2688 2656 269 240 13 78 chr6 164713955 164714109 -17701133 - L1ME3A LINE L1 -3857 2272 2129 257 333 115 21 chr6 164714493 164714781 -17700461 - HAL1 LINE L1 -825 1682 1368 334 293 107 41 chr6 164714821 164715111 -17700131 - L1ME3A LINE L1 -4904 1215 907 1843 188 13 43 chr6 164715313 164715685 -17699557 - MLT1A1 LTR MaLR 0 365 5 372 161 0 0 chr6 164715768 164715820 -17699422 + CT-rich Low_complexity Low_complexity 2 56 -38 186 43 0 0 chr6 164715820 164715843 -17699399 + (TG)n Simple_repeat Simple_repeat 2 24 0 372 161 0 0 chr6 164715843 164715883 -17699359 + CT-rich Low_complexity Low_complexity 55 94 0 1225 144 0 44 chr6 164716195 164716424 -17698818 + Tigger5 DNA MER2_type 2105 2323 0 1765 166 3 34 chr6 164716979 164717012 -17698230 - AluJb SINE Alu 0 312 279 207 0 0 0 chr6 164717012 164717035 -17698207 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1765 166 3 34 chr6 164717035 164717321 -17697921 - AluJb SINE Alu -33 279 3 349 343 114 0 chr6 164717325 164717491 -17697751 + L2 LINE L2 2887 3071 -201 537 239 44 25 chr6 164717577 164717736 -17697506 - MIR SINE MIR -99 163 2 215 235 0 20 chr6 164718189 164718240 -17697002 + L2 LINE L2 3249 3298 -15 2288 109 0 13 chr6 164719532 164719843 -17695399 + AluSx SINE Alu 1 307 -5 292 188 12 35 chr6 164719854 164719939 -17695303 + A-rich Low_complexity Low_complexity 5 87 0 304 295 141 13 chr6 164720151 164720300 -17694942 - MIR SINE MIR -74 188 21 926 272 104 27 chr6 164722235 164722465 -17692777 + L1ME3 LINE L1 4028 4239 -1907 1614 169 13 36 chr6 164722465 164722773 -17692469 + AluJb SINE Alu 1 301 -11 926 272 104 27 chr6 164722773 164723031 -17692211 + L1ME3 LINE L1 4239 4554 -1592 460 286 39 16 chr6 164723080 164723262 -17691980 - L1M4 LINE L1 -1075 5071 4886 699 267 50 79 chr6 164723278 164723913 -17691329 + L1ME3 LINE L1 5122 5737 -433 812 182 0 0 chr6 164723916 164724037 -17691205 + AluJb SINE Alu 2 122 -190 674 186 80 160 chr6 164724052 164724526 -17690716 + L1ME3 LINE L1 5725 6160 -2 1402 189 33 62 chr6 164724549 164724689 -17690553 + AluJo SINE Alu 1 144 -168 1989 123 3 45 chr6 164724689 164724998 -17690244 + AluSx SINE Alu 1 296 -16 1402 189 33 62 chr6 164724998 164725164 -17690078 + AluJo SINE Alu 144 298 -14 562 291 80 51 chr6 164725171 164725210 -17690032 - L2 LINE L2 -527 2787 2751 1919 120 7 34 chr6 164725210 164725351 -17689891 + AluSx SINE Alu 1 144 -172 2164 120 0 3 chr6 164725351 164725651 -17689591 + AluSq SINE Alu 1 299 -14 1919 120 7 34 chr6 164725651 164725833 -17689409 + AluSx SINE Alu 144 316 0 562 291 80 51 chr6 164725833 164726029 -17689213 - L2 LINE L2 -563 2751 2544 2223 77 7 17 chr6 164726031 164726328 -17688914 + AluY SINE Alu 1 294 -17 454 323 52 36 chr6 164726336 164726587 -17688655 + MLT1K LTR MaLR 172 426 -162 2182 77 18 7 chr6 164726655 164726940 -17688302 + AluSq SINE Alu 16 303 -10 2162 97 7 7 chr6 164726943 164727232 -17688010 + AluY SINE Alu 1 289 -22 535 250 157 9 chr6 164727277 164727493 -17687749 + HAL1 LINE L1 1401 1648 -859 1866 119 4 4 chr6 164728038 164728291 -17686951 - AluSx SINE Alu -59 253 1 2327 92 0 0 chr6 164728904 164729196 -17686046 - AluSg SINE Alu -18 292 1 1797 163 10 10 chr6 164729722 164730011 -17685231 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr6 164730011 164730039 -17685203 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr6 164730178 164730204 -17685038 + (TA)n Simple_repeat Simple_repeat 1 26 0 26 82 0 0 chr6 164730727 164730788 -17684454 + AT_rich Low_complexity Low_complexity 1 61 0 341 296 118 35 chr6 164730914 164731083 -17684159 + L1ME LINE L1 5352 5534 -587 3665 180 82 31 chr6 164731094 164732018 -17683224 - MER52C LTR ERV1 0 1278 128 485 306 157 56 chr6 164732079 164732766 -17682476 + L2 LINE L2 2560 3313 0 233 57 29 0 chr6 164733081 164733116 -17682126 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 708 214 0 0 chr6 164733135 164733252 -17681990 - FLAM_C SINE Alu -25 118 2 2486 237 69 29 chr6 164733453 164734311 -17680931 + Charlie2a DNA MER1_type 1542 2441 -421 1812 171 10 7 chr6 164734311 164734621 -17680621 + AluSx SINE Alu 1 311 -1 2486 237 69 29 chr6 164734621 164734686 -17680556 + Charlie2a DNA MER1_type 2441 2502 -360 1387 166 59 52 chr6 164734696 164734985 -17680257 + AluJo SINE Alu 6 296 -16 727 270 104 3 chr6 164734988 164735306 -17679936 + Charlie2a DNA MER1_type 2503 2852 -10 1799 180 0 10 chr6 164735316 164735611 -17679631 + AluJo SINE Alu 1 292 -20 467 287 113 10 chr6 164735647 164735842 -17679400 + MIR SINE MIR 46 260 -2 426 184 148 51 chr6 164736384 164736580 -17678662 - L1ME4a LINE L1 -22 6099 5885 2242 102 7 0 chr6 164737491 164737786 -17677456 + AluSq SINE Alu 1 297 -16 2931 92 75 12 chr6 164738166 164738580 -17676662 + L1PA10 LINE L1 5729 6168 0 213 209 0 0 chr6 164738588 164738631 -17676611 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 1566 188 7 13 chr6 164739143 164739441 -17675801 + AluJo SINE Alu 4 299 -13 22 35 0 0 chr6 164740667 164740696 -17674546 + AT_rich Low_complexity Low_complexity 1 29 0 389 262 70 77 chr6 164741190 164741278 -17673964 + MIR SINE MIR 35 122 -140 1796 179 0 10 chr6 164741278 164741585 -17673657 - AluJb SINE Alu -8 304 1 389 262 70 77 chr6 164741585 164741720 -17673522 + MIR SINE MIR 122 259 -3 2404 84 7 0 chr6 164741903 164742200 -17673042 - AluSg SINE Alu -11 299 1 1686 180 20 7 chr6 164742450 164742745 -17672497 + AluJb SINE Alu 1 299 -13 1436 181 32 14 chr6 164742757 164743039 -17672203 + AluJo SINE Alu 3 289 -23 40 21 0 0 chr6 164743039 164743086 -17672156 + AT_rich Low_complexity Low_complexity 1 47 0 187 333 30 15 chr6 164743277 164743343 -17671899 + L2 LINE L2 3188 3254 -18 2519 83 0 3 chr6 164743642 164743956 -17671286 + AluSp SINE Alu 1 313 0 1795 181 76 32 chr6 164744389 164744920 -17670322 + MLT2A2 LTR ERVL 1 554 0 205 226 19 0 chr6 164745157 164745210 -17670032 + T-rich Low_complexity Low_complexity 2 55 0 843 124 7 29 chr6 164745210 164745347 -17669895 - AluJo SINE Alu -178 134 1 241 267 13 13 chr6 164745561 164745636 -17669606 - MIR SINE MIR -127 135 61 629 164 33 0 chr6 164745750 164745872 -17669370 - MLT1B LTR MaLR 0 390 265 * 792 87 6 143 chr6 164745871 164745945 -17669297 - MLT1B LTR MaLR -250 140 98 2541 98 19 32 chr6 164745945 164746314 -17668928 + THE1B LTR MaLR 1 364 0 792 87 6 143 chr6 164746314 164746400 -17668842 - MLT1B LTR MaLR -292 98 2 242 277 0 18 chr6 164746782 164747006 -17668236 + G-rich Low_complexity Low_complexity 1 219 0 1401 183 0 43 chr6 164747431 164747710 -17667532 - AluJb SINE Alu -45 267 1 2374 101 0 0 chr6 164749038 164749346 -17665896 - AluSx SINE Alu -4 308 1 4807 138 60 44 chr6 164749503 164750438 -17664804 + L1MA7 LINE L1 5341 6290 -1 315 321 226 9 chr6 164750480 164750807 -17664435 + L2 LINE L2 1912 2309 -1005 5406 149 14 43 chr6 164750882 164751637 -17663605 + L1MA8 LINE L1 5304 6023 -268 2341 86 0 3 chr6 164751637 164751928 -17663314 - AluSg SINE Alu -20 290 1 5406 149 14 43 chr6 164751928 164752185 -17663057 + L1MA8 LINE L1 6023 6286 -5 646 176 124 7 chr6 164752221 164752374 -17662868 + AluSg/x SINE Alu 137 307 -5 2035 139 0 16 chr6 164752377 164752694 -17662548 + AluSx SINE Alu 1 312 0 2043 147 0 13 chr6 164753202 164753514 -17661728 - AluJo SINE Alu -2 310 3 2283 104 13 7 chr6 164754354 164754652 -17660590 - AluSx SINE Alu -12 300 1 274 297 153 18 chr6 164754674 164754785 -17660457 + L2 LINE L2 3134 3259 -13 1641 128 7 105 chr6 164755322 164755627 -17659615 - AluSx SINE Alu -37 275 1 1035 134 52 6 chr6 164755707 164755879 -17659363 + Tigger1 DNA MER2_type 2238 2417 -1 2568 156 54 17 chr6 164755881 164756362 -17658880 + L1MA8 LINE L1 5787 6285 -6 678 222 180 5 chr6 164756387 164756576 -17658666 + L1ME2 LINE L1 4910 5131 -1015 2611 228 89 27 chr6 164756601 164756737 -17658505 + L1ME2 LINE L1 5196 5322 -842 2413 91 0 3 chr6 164756737 164757044 -17658198 + AluSg SINE Alu 1 306 -4 2611 228 89 27 chr6 164757044 164757796 -17657446 + L1ME2 LINE L1 5322 6139 -25 1042 162 23 0 chr6 164758036 164758209 -17657033 + AluJb SINE Alu 134 310 -2 313 270 0 27 chr6 164760181 164760193 -17655049 + (TA)n Simple_repeat Simple_repeat 1 12 -96 818 180 0 0 chr6 164760193 164760315 -17654927 + FLAM_A SINE Alu 1 122 -11 313 270 0 27 chr6 164760315 164760400 -17654842 + (TA)n Simple_repeat Simple_repeat 12 97 -11 1990 148 7 0 chr6 164760400 164760698 -17654544 - AluJo SINE Alu -12 300 1 313 270 0 27 chr6 164760698 164760710 -17654532 + (TA)n Simple_repeat Simple_repeat 97 108 0 2239 122 0 6 chr6 164760963 164761274 -17653968 + AluSx SINE Alu 1 309 -3 995 234 79 55 chr6 164761284 164761702 -17653540 + L1M4 LINE L1 3585 4012 -2134 854 163 0 0 chr6 164761702 164761837 -17653405 + AluJb SINE Alu 1 135 -177 288 0 0 0 chr6 164761841 164761873 -17653369 + (CA)n Simple_repeat Simple_repeat 2 33 0 438 241 44 22 chr6 164761873 164762010 -17653232 + L1M4 LINE L1 4064 4203 -1943 2098 129 0 3 chr6 164762025 164762319 -17652923 + AluSg SINE Alu 1 293 -17 248 261 72 44 chr6 164762335 164762515 -17652727 + L1MC5 LINE L1 7491 7675 -286 529 255 94 91 chr6 164762537 164762823 -17652419 + LTR16C LTR ERVL 4 290 -201 1223 42 7 0 chr6 164763067 164763209 -17652033 + L1PA8 LINE L1 6022 6164 -8 1688 109 105 208 chr6 164763706 164763995 -17651247 + MSTA LTR MaLR 1 223 -205 294 29 0 0 chr6 164763995 164764030 -17651212 + (TC)n Simple_repeat Simple_repeat 2 36 0 1688 109 105 208 chr6 164764030 164764217 -17651025 + MSTA LTR MaLR 223 428 0 986 249 27 31 chr6 164764219 164764476 -17650766 - MIR SINE MIR -1 261 6 184 343 200 0 chr6 164764487 164764592 -17650650 - L3 LINE CR1 -23 1554 1429 2312 87 0 3 chr6 164765223 164765533 -17649709 + AluSc SINE Alu 1 309 0 1578 167 67 4 chr6 164765635 164765905 -17649337 + AluJb SINE Alu 13 299 -13 36 40 0 0 chr6 164766107 164766157 -17649085 + AT_rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr6 164766314 164766336 -17648906 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 195 184 0 0 chr6 164766606 164766644 -17648598 + A-rich Low_complexity Low_complexity 1 38 0 4112 146 25 21 chr6 164766753 164767474 -17647768 + MER50 LTR ERV1 1 724 -10 2352 87 0 13 chr6 164767735 164768033 -17647209 - AluSg SINE Alu -16 294 1 21 36 0 0 chr6 164768107 164768135 -17647107 + AT_rich Low_complexity Low_complexity 1 28 0 945 228 150 65 chr6 164768263 164768524 -17646718 - L1MC4 LINE L1 0 8042 7804 2462 63 3 0 chr6 164768524 164768826 -17646416 - AluY SINE Alu -8 303 1 945 228 150 65 chr6 164768826 164769153 -17646089 - L1MC4 LINE L1 -238 7804 7327 730 185 0 75 chr6 164771254 164771327 -17643915 + AluJo SINE Alu 2 60 -252 1895 196 15 9 chr6 164771327 164771668 -17643574 + MER61A LTR ERV1 1 343 0 730 185 0 75 chr6 164771668 164771740 -17643502 + AluJo SINE Alu 60 136 -176 2252 96 0 0 chr6 164771759 164772051 -17643191 + AluY SINE Alu 1 292 -19 324 239 34 60 chr6 164772054 164772171 -17643071 - MIR SINE MIR -2 260 147 573 115 0 0 chr6 164772691 164772778 -17642464 + (CA)n Simple_repeat Simple_repeat 1 87 0 2319 262 40 13 chr6 164772972 164773728 -17641514 + L1MB7 LINE L1 5574 6184 0 274 289 67 0 chr6 164774033 164774137 -17641105 + MER104 DNA Tc2 1 111 -69 1230 241 183 29 chr6 164774592 164775248 -17639994 + L1MC4a LINE L1 5505 6261 -1547 206 200 0 0 chr6 164775689 164775729 -17639513 - MIR SINE MIR 0 262 223 1979 129 0 4 chr6 164776277 164776555 -17638687 - AluSx SINE Alu -2 310 34 1142 250 42 80 chr6 164777075 164777246 -17637996 + LTR16C LTR ERVL 59 235 -256 1438 199 57 4 chr6 164777246 164777527 -17637715 + AluJo SINE Alu 1 296 -16 1142 250 42 80 chr6 164777527 164777803 -17637439 + LTR16C LTR ERVL 235 489 -2 2378 79 3 3 chr6 164778568 164778871 -17636371 + AluSq SINE Alu 1 303 -10 4274 168 34 19 chr6 164779039 164779873 -17635369 + L1MB3 LINE L1 5308 6153 -30 270 241 0 0 chr6 164781098 164781185 -17634057 + (TA)n Simple_repeat Simple_repeat 1 87 0 308 344 38 6 chr6 164781340 164781500 -17633742 + L1ME4a LINE L1 5762 5926 -195 2054 129 0 32 chr6 164781571 164781882 -17633360 - AluSp SINE Alu -9 304 4 940 137 0 20 chr6 164782020 164782166 -17633076 - FLAM_C SINE Alu 0 143 1 2087 124 7 0 chr6 164783032 164783322 -17631920 - AluSx SINE Alu -20 292 1 213 190 17 17 chr6 164783483 164783541 -17631701 + (TTAA)n Simple_repeat Simple_repeat 3 60 0 2561 67 0 0 chr6 164784276 164784575 -17630667 + AluSc SINE Alu 1 299 -10 181 311 116 56 chr6 164784954 164785205 -17630037 + L2 LINE L2 2561 2826 -488 517 276 87 6 chr6 164785253 164785449 -17629793 + MIR SINE MIR 21 230 -32 2236 113 0 3 chr6 164785925 164786225 -17629017 + AluSx SINE Alu 1 299 -13 436 279 0 38 chr6 164836317 164836500 -17578742 + G-rich Low_complexity Low_complexity 2 177 0 207 338 137 23 chr6 164837526 164837745 -17577497 + L2 LINE L2 2920 3163 -109 312 236 109 9 chr6 164838280 164838390 -17576852 - MIR3 SINE MIR -7 201 81 352 286 68 23 chr6 164838565 164838698 -17576544 + MIR SINE MIR 5 143 -119 481 285 19 56 chr6 164839183 164839257 -17575985 - MIR SINE MIR -11 251 176 2350 154 64 15 chr6 164839257 164839665 -17575577 - MSTA LTR MaLR 0 428 1 481 285 19 56 chr6 164839665 164839699 -17575543 - MIR SINE MIR -86 176 142 2235 122 3 0 chr6 164839699 164840010 -17575232 + AluSx SINE Alu 1 312 0 481 285 19 56 chr6 164840010 164840146 -17575096 - MIR SINE MIR -120 142 22 2642 108 8 30 chr6 164840611 164840983 -17574259 + THE1B LTR MaLR 1 364 0 1846 150 35 3 chr6 164842745 164843032 -17572210 - AluSx SINE Alu -8 304 9 181 259 49 37 chr6 164843196 164843277 -17571965 + MIR3 SINE MIR 97 178 -30 2245 112 0 3 chr6 164843682 164843978 -17571264 + AluSx SINE Alu 1 295 -17 716 215 147 5 chr6 164844413 164844511 -17570731 - L1MA9 LINE L1 -38 6274 6191 351 0 0 0 chr6 164844511 164844550 -17570692 + (TG)n Simple_repeat Simple_repeat 2 40 0 716 215 147 5 chr6 164844550 164844642 -17570600 - L1MA9 LINE L1 -121 6191 6057 1702 151 22 35 chr6 164844762 164845081 -17570161 + L1MA9 LINE L1 5998 6312 0 874 293 80 61 chr6 164845121 164845762 -17569480 + L1MC4a LINE L1 5220 5224 -922 1887 157 14 0 chr6 164845762 164846056 -17569186 + AluJb SINE Alu 1 298 -14 874 293 80 61 chr6 164846056 164846234 -17569008 + L1MC4a LINE L1 5224 5397 -749 2023 156 0 7 chr6 164846404 164846712 -17568530 - AluJb SINE Alu -6 306 1 2211 119 3 3 chr6 164846863 164847173 -17568069 - AluSq SINE Alu -3 310 1 1859 154 19 19 chr6 164847179 164847491 -17567751 - AluJo SINE Alu 0 312 1 2021 148 0 16 chr6 164848571 164848888 -17566354 - AluSx SINE Alu 0 312 1 869 113 8 23 chr6 164849279 164849412 -17565830 + MLT1A1 LTR MaLR 19 149 -216 258 303 26 13 chr6 164849930 164850006 -17565236 + L2 LINE L2 3233 3309 -4 885 173 36 24 chr6 164850416 164850584 -17564658 - MLT1A1 LTR MaLR 0 365 196 2229 113 0 0 chr6 164850587 164850888 -17564354 + AluSx SINE Alu 4 304 -8 1013 141 0 0 chr6 164850888 164851044 -17564198 + AluSg/x SINE Alu 134 289 -23 777 163 13 146 chr6 164851054 164851115 -17564127 - MLT1A1 LTR MaLR -155 210 142 2003 95 0 4 chr6 164851115 164851378 -17563864 - AluSq SINE Alu -10 303 42 777 163 13 146 chr6 164851378 164851555 -17563687 - MLT1A1 LTR MaLR -223 142 4 607 266 17 11 chr6 164851723 164851900 -17563342 - L1ME3 LINE L1 0 6162 5985 268 146 135 34 chr6 164851924 164852013 -17563229 + L1ME4a LINE L1 6022 6119 -2 1462 130 136 45 chr6 164852114 164852215 -17563027 + MLT1A1 LTR MaLR 6 96 -269 2257 103 0 0 chr6 164852215 164852507 -17562735 + AluSx SINE Alu 1 292 -20 1462 130 136 45 chr6 164852507 164852735 -17562507 + MLT1A1 LTR MaLR 96 365 0 1870 176 0 0 chr6 164853382 164853683 -17561559 + AluJo SINE Alu 12 312 0 2419 67 7 0 chr6 164853810 164854109 -17561133 + AluY SINE Alu 3 303 -8 1351 149 20 140 chr6 164855844 164856015 -17559227 - AluYb8 SINE Alu 0 308 118 354 45 0 0 chr6 164856015 164856059 -17559183 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2193 109 0 3 chr6 164856059 164856344 -17558898 - AluSx SINE Alu -28 284 1 1351 149 20 140 chr6 164856344 164856521 -17558721 - AluYb8 SINE Alu -188 120 1 794 67 0 0 chr6 164856555 164856645 -17558597 - AluSc SINE Alu -104 205 116 392 354 50 21 chr6 164856851 164857091 -17558151 - MIR SINE MIR -14 248 2 1965 142 0 0 chr6 164858800 164859113 -17556129 + AluSx SINE Alu 2 314 0 276 208 44 13 chr6 164859915 164860074 -17555168 + (TA)n Simple_repeat Simple_repeat 2 165 0 485 305 126 63 chr6 164860195 164860387 -17554855 + L2 LINE L2 2809 2987 -285 2462 65 3 13 chr6 164860387 164860697 -17554545 - AluSp SINE Alu -6 307 1 485 305 126 63 chr6 164860697 164860933 -17554309 + L2 LINE L2 2987 3264 -8 1982 264 227 11 chr6 164861531 164862039 -17553203 + L2 LINE L2 1809 2206 -1107 2058 115 0 11 chr6 164862039 164862326 -17552916 + AluSx SINE Alu 29 312 0 1982 264 227 11 chr6 164862326 164863035 -17552207 + L2 LINE L2 2206 3310 -3 2038 137 161 11 chr6 164863131 164863503 -17551739 - MSTA LTR MaLR 0 428 1 2662 128 8 8 chr6 164863617 164863992 -17551250 - THE1C LTR MaLR 0 375 1 1843 148 3 53 chr6 164864908 164865226 -17550016 - AluJo SINE Alu -10 302 1 215 316 125 24 chr6 164865558 164865726 -17549516 + MER5A DNA MER1_type 1 185 -4 341 284 10 0 chr6 164866045 164866147 -17549095 - L1ME4a LINE L1 -69 6052 5950 271 309 0 0 chr6 164866478 164866546 -17548696 + (CA)n Simple_repeat Simple_repeat 1 68 0 242 130 65 0 chr6 164866546 164866592 -17548650 + MLT2B1 LTR ERVL 464 512 -8 622 143 0 0 chr6 164868025 164868123 -17547119 - L1MA8 LINE L1 -1 6290 6193 2599 179 104 17 chr6 164868519 164869038 -17546204 + MLT1F1 LTR MaLR 1 564 -3 2395 81 0 10 chr6 164869069 164869376 -17545866 - AluY SINE Alu -7 304 1 298 218 188 38 chr6 164869428 164869561 -17545681 + L2 LINE L2 3161 3313 0 2570 157 16 16 chr6 164871132 164871558 -17543684 - MSTB LTR MaLR 0 426 1 238 278 28 14 chr6 164871646 164871718 -17543524 - L2 LINE L2 -37 3276 3204 378 214 0 0 chr6 164871791 164871880 -17543362 + (TA)n Simple_repeat Simple_repeat 1 89 0 227 250 0 0 chr6 164871884 164871936 -17543306 + L1MC4 LINE L1 6652 6703 -1339 * 288 244 49 0 chr6 164871890 164871972 -17543270 - L1MC4 LINE L1 -1339 6703 6618 268 247 52 0 chr6 164871908 164871985 -17543257 + L1MC4 LINE L1 6616 6696 -1346 * 210 236 0 0 chr6 164871985 164872040 -17543202 + (TATG)n Simple_repeat Simple_repeat 4 58 0 225 222 37 0 chr6 164872072 164872126 -17543116 + L1MD3 LINE L1 6613 6668 -1327 * 256 192 0 0 chr6 164872118 164872170 -17543072 - L1MC4 LINE L1 -1339 6703 6652 256 306 0 0 chr6 164872188 164872273 -17542969 - L1MC4 LINE L1 -1343 6699 6615 * 265 192 0 135 chr6 164872248 164872352 -17542890 + L1MC4 LINE L1 6614 6703 -1339 206 277 0 0 chr6 164872352 164872399 -17542843 + (TA)n Simple_repeat Simple_repeat 2 48 0 268 271 47 0 chr6 164872400 164872485 -17542757 + L1MC4 LINE L1 6614 6702 -1340 238 289 22 0 chr6 164872424 164872514 -17542728 - L1MC4 LINE L1 -1337 6705 6614 * 276 261 0 22 chr6 164872516 164872608 -17542634 + L1MC4 LINE L1 6614 6703 -1339 243 170 0 0 chr6 164872609 164872656 -17542586 + (TA)n Simple_repeat Simple_repeat 1 47 0 227 105 0 0 chr6 164872656 164872694 -17542548 - LTR66 LTR ERVL -169 441 404 250 251 26 0 chr6 164872696 164872792 -17542450 + L1MC4 LINE L1 6571 6646 -1139 241 291 47 0 chr6 164872830 164872916 -17542326 + L1MC4 LINE L1 6614 6703 -1339 260 232 18 0 chr6 164872920 164872976 -17542266 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 807 261 118 5 chr6 164873100 164873311 -17541931 - LTR16C LTR ERVL -222 269 35 469 252 122 0 chr6 164873402 164873517 -17541725 + MER115 DNA AcHobo 70 198 -495 1804 158 17 83 chr6 164873519 164873637 -17541605 + MLT1B LTR MaLR 1 125 -265 1985 151 0 13 chr6 164873637 164873942 -17541300 + AluJo SINE Alu 1 301 -11 1910 128 51 14 chr6 164873950 164874246 -17540996 + AluJb SINE Alu 5 311 -1 1804 158 17 83 chr6 164874246 164874528 -17540714 + MLT1B LTR MaLR 132 383 -7 956 209 60 90 chr6 164874615 164875017 -17540225 - L1MC5 LINE L1 -722 7239 6850 462 305 102 0 chr6 164875029 164875196 -17540046 - MIR SINE MIR -72 190 7 268 133 0 0 chr6 164875272 164875317 -17539925 - MLT2B1 LTR ERVL 0 520 476 1900 206 74 32 chr6 164875368 164875427 -17539815 - MLT2B1 LTR ERVL -40 480 425 2742 111 14 0 chr6 164875427 164875797 -17539445 - THE1C LTR MaLR 0 375 1 1900 206 74 32 chr6 164875797 164876198 -17539044 - MLT2B1 LTR ERVL -95 425 1 1424 94 0 5 chr6 164876580 164876771 -17538471 + AluY SINE Alu 1 190 -121 679 38 0 13 chr6 164876771 164876850 -17538392 + AluY SINE Alu 57 134 -177 2305 83 3 0 chr6 164876850 164877140 -17538102 + AluY SINE Alu 1 291 -20 2085 175 72 25 chr6 164877160 164877605 -17537637 + MLT1C LTR MaLR 1 466 -1 1940 152 0 7 chr6 164877664 164877960 -17537282 + AluJo SINE Alu 10 303 -9 187 301 172 21 chr6 164877960 164878043 -17537199 - MIR SINE MIR -86 122 22 223 347 74 8 chr6 164878096 164878217 -17537025 - L2 LINE L2 -1 3312 3184 2334 111 0 0 chr6 164878219 164878525 -17536717 + AluSx SINE Alu 1 306 -6 23 68 0 0 chr6 164878662 164878706 -17536536 + AT_rich Low_complexity Low_complexity 1 44 0 943 227 39 5 chr6 164878782 164878985 -17536257 + MER20 DNA MER1_type 1 210 -9 2089 141 7 0 chr6 164879377 164879682 -17535560 - AluSx SINE Alu -5 307 1 2255 120 3 0 chr6 164880223 164880557 -17534685 + L1P LINE L1 4788 5122 -1024 501 314 12 13 chr6 164880993 164881169 -17534073 - MIR SINE MIR -64 144 16 1963 127 57 0 chr6 164881284 164881567 -17533675 - AluJb SINE Alu -12 300 2 1816 168 0 14 chr6 164881672 164881969 -17533273 - AluJb SINE Alu -19 293 1 540 204 51 0 chr6 164882122 164882220 -17533022 + MER20B DNA MER1_type 1 103 -116 2306 160 88 46 chr6 164882445 164882946 -17532296 + Charlie1b DNA MER1_type 2 523 0 24 53 0 0 chr6 164883146 164883184 -17532058 + AT_rich Low_complexity Low_complexity 1 38 0 395 312 51 0 chr6 164883743 164883881 -17531361 + MIR SINE MIR 47 191 -71 186 43 0 0 chr6 164884613 164884636 -17530606 + (TG)n Simple_repeat Simple_repeat 2 24 0 288 91 0 0 chr6 164886849 164886893 -17528349 + (TA)n Simple_repeat Simple_repeat 2 45 0 2021 129 0 40 chr6 164887011 164887336 -17527906 + AluSx SINE Alu 1 312 0 2015 101 3 21 chr6 164887806 164888120 -17527122 - AluSg SINE Alu 0 309 1 467 281 37 7 chr6 164888827 164888962 -17526280 - MIR SINE MIR -102 160 22 2211 104 0 0 chr6 164888962 164889260 -17525982 - AluSx SINE Alu -14 298 1 295 336 49 25 chr6 164889305 164889427 -17525815 - L2 LINE L2 0 3272 3148 721 209 39 28 chr6 164889471 164889661 -17525581 - L1M3 LINE L1 -529 5639 5459 2319 90 3 3 chr6 164891330 164891629 -17523613 + AluSx SINE Alu 1 299 -13 259 291 74 101 chr6 164891727 164891760 -17523482 - MIR3 SINE MIR -29 179 147 656 204 99 23 chr6 164891760 164891932 -17523310 + MER5A DNA MER1_type 5 189 0 259 291 74 101 chr6 164891932 164892046 -17523196 - MIR3 SINE MIR -61 147 36 2446 43 14 0 chr6 164892780 164893060 -17522182 - AluSp SINE Alu -8 305 22 2251 105 0 3 chr6 164893653 164893958 -17521284 - AluSc SINE Alu -5 304 1 904 145 0 14 chr6 164894207 164894352 -17520890 - FLAM_C SINE Alu 0 143 1 2359 64 0 0 chr6 164894681 164894998 -17520244 - AluY SINE Alu 0 317 1 1629 195 0 20 chr6 164895008 164895300 -17519942 - AluJo SINE Alu -26 286 1 184 139 0 28 chr6 164895931 164895967 -17519275 - L2 LINE L2 -31 3241 3207 1245 143 14 45 chr6 164896121 164896344 -17518898 - AluJo SINE Alu -10 302 87 387 0 0 0 chr6 164896366 164896409 -17518833 + (CA)n Simple_repeat Simple_repeat 2 44 0 324 297 47 38 chr6 164896499 164896711 -17518531 + L2 LINE L2 2475 2688 -626 2389 113 0 0 chr6 164897512 164897822 -17517420 + AluSx SINE Alu 3 312 0 296 275 62 95 chr6 164897892 164898165 -17517077 + L2 LINE L2 2135 2398 -916 2246 113 0 6 chr6 164898588 164898899 -17516343 - AluSx SINE Alu -1 311 3 849 147 0 14 chr6 164899478 164899621 -17515621 - FRAM SINE Alu -1 175 35 2351 87 0 0 chr6 164899631 164899930 -17515312 - AluSg SINE Alu -11 299 1 195 264 19 0 chr6 164900205 164900258 -17514984 - L2 LINE L2 -599 2715 2662 230 291 57 57 chr6 164900439 164900597 -17514645 - L2 LINE L2 -665 2649 2492 226 241 17 17 chr6 164900743 164900801 -17514441 - MIR3 SINE MIR -21 187 130 * 379 288 68 48 chr6 164900799 164900843 -17514399 - MIR SINE MIR 0 262 220 1558 212 13 73 chr6 164900843 164900883 -17514359 + MLT1A2 LTR MaLR 1 42 -332 2199 109 0 0 chr6 164900883 164901176 -17514066 + AluSx SINE Alu 1 293 -19 1558 212 13 73 chr6 164901176 164901532 -17513710 + MLT1A2 LTR MaLR 42 373 -1 379 288 68 48 chr6 164901532 164901714 -17513528 - MIR SINE MIR -42 220 33 207 0 0 0 chr6 164903085 164903108 -17512134 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 688 138 8 65 chr6 164903113 164903236 -17512006 - AluJb SINE Alu -195 117 2 3789 96 25 0 chr6 164903387 164903900 -17511342 + L1PA10 LINE L1 5639 6164 -4 25 0 0 0 chr6 164903900 164903925 -17511317 + AT_rich Low_complexity Low_complexity 1 25 0 2606 61 0 0 chr6 164904035 164904345 -17510897 + AluY SINE Alu 1 310 -1 1800 167 13 16 chr6 164904563 164904875 -17510367 + AluJo SINE Alu 1 311 -1 531 194 78 171 chr6 164904914 164904989 -17510253 + L1MA9 LINE L1 5961 6041 -271 2282 96 0 13 chr6 164904989 164905290 -17509952 + AluSx SINE Alu 1 297 -15 531 194 78 171 chr6 164905290 164905530 -17509712 + L1MA9 LINE L1 6041 6244 -68 2214 110 3 7 chr6 164905530 164905829 -17509413 + AluSx SINE Alu 1 298 -14 531 194 78 171 chr6 164905829 164905858 -17509384 + L1MA9 LINE L1 6244 6274 -38 269 290 56 106 chr6 164906484 164906805 -17508437 + L2 LINE L2 2963 3267 -5 411 119 0 0 chr6 164907073 164907140 -17508102 + (TC)n Simple_repeat Simple_repeat 2 68 0 896 227 146 80 chr6 164907330 164907427 -17507815 - HAL1 LINE L1 -1137 1370 1281 1789 138 66 0 chr6 164907427 164907716 -17507526 - AluSx SINE Alu -4 308 1 896 227 146 80 chr6 164907716 164908208 -17507034 - HAL1 LINE L1 -1226 1281 742 1759 212 50 92 chr6 164908208 164908750 -17506492 + MLT2B1 LTR ERVL 2 520 0 13909 184 53 17 chr6 164908751 164910524 -17504718 + ERVL-B1 LTR ERVL 2 1906 -3858 2002 142 0 17 chr6 164910524 164910826 -17504416 - AluJo SINE Alu -15 297 1 13909 184 53 17 chr6 164910826 164911709 -17503533 + ERVL-B1 LTR ERVL 1906 2755 -3009 1382 250 31 19 chr6 164911709 164912069 -17503173 - MLT1A2 LTR MaLR 0 374 11 3753 169 14 67 chr6 164912072 164912834 -17502408 + ERVL-B1 LTR ERVL 2751 3472 -2292 711 162 0 0 chr6 164912838 164912949 -17502293 + ERVL LTR ERVL 2508 2618 -3146 13242 153 32 24 chr6 164912960 164913850 -17501392 + ERVL LTR ERVL 3484 4365 -1399 807 159 0 51 chr6 164913850 164913988 -17501254 - FLAM_C SINE Alu 0 133 3 13242 153 32 24 chr6 164913988 164915360 -17499882 + ERVL LTR ERVL 4365 5764 0 832 262 70 4 chr6 164915360 164915438 -17499804 + Ricksha DNA DNA 341 433 -2813 2351 110 0 3 chr6 164915463 164915772 -17499470 + AluSx SINE Alu 1 308 -4 766 144 93 7 chr6 164915792 164915931 -17499311 + L1MB8 LINE L1 6019 6169 -9 228 339 31 56 chr6 164916883 164917078 -17498164 + MIR SINE MIR 14 203 -59 378 0 0 0 chr6 164917344 164917386 -17497856 + (CA)n Simple_repeat Simple_repeat 1 42 0 2194 127 3 0 chr6 164918124 164918432 -17496810 + AluSx SINE Alu 1 309 -3 442 38 0 0 chr6 164918454 164918507 -17496735 + MADE1 DNA Mariner 1 53 -27 391 75 0 0 chr6 164918583 164918636 -17496606 + MADE1 DNA Mariner 28 80 0 410 292 36 36 chr6 164918895 164919063 -17496179 + MIR SINE MIR 70 237 -25 2014 135 4 0 chr6 164919065 164919381 -17495861 - AluSx SINE Alu 0 317 1 2174 120 0 3 chr6 164920562 164920871 -17494371 - AluSg SINE Alu -2 308 1 875 240 31 0 chr6 164921014 164921206 -17494036 - MER63A DNA MER1_type -8 202 5 245 261 9 27 chr6 164921450 164921561 -17493681 - L3 LINE CR1 -730 847 739 814 183 0 21 chr6 164921602 164921744 -17493498 + FLAM_C SINE Alu 2 140 -3 2039 138 0 25 chr6 164921748 164922068 -17493174 + AluSx SINE Alu 1 312 0 656 267 91 71 chr6 164922735 164923184 -17492058 - L2 LINE L2 -15 3298 2841 2306 102 7 0 chr6 164924414 164924719 -17490523 + AluSp SINE Alu 1 307 -6 491 325 89 5 chr6 164924846 164925037 -17490205 + MIR SINE MIR 2 208 -54 357 316 19 39 chr6 164926095 164926250 -17488992 - MIR SINE MIR -77 185 34 359 158 134 126 chr6 164926868 164926995 -17488247 + L2 LINE L2 3182 3309 -4 1272 188 54 4 chr6 164927340 164927616 -17487626 + MER20B DNA MER1_type 217 506 -277 1212 243 65 63 chr6 164927645 164928044 -17487198 + L1MEc LINE L1 35 434 -5962 * 2146 238 93 50 chr6 164928042 164929290 -17485952 + L1MEc LINE L1 1038 2511 -3704 2258 106 0 6 chr6 164929290 164929601 -17485641 - AluSx SINE Alu -3 309 1 2146 238 93 50 chr6 164929601 164929915 -17485327 + L1MEc LINE L1 2511 2810 -3405 449 248 62 6 chr6 164930116 164930277 -17484965 + MER20B DNA MER1_type 613 782 -1 442 327 143 42 chr6 164930492 164930828 -17484414 - L3 LINE CR1 -532 1045 676 14341 156 28 19 chr6 164931080 164934070 -17481172 - L1M4 LINE L1 -3343 3039 22 22 56 0 0 chr6 164934095 164934131 -17481111 + AT_rich Low_complexity Low_complexity 1 36 0 281 200 70 80 chr6 164934574 164934674 -17480568 - MIR3 SINE MIR -39 169 71 2405 73 0 0 chr6 164934805 164935094 -17480148 + AluY SINE Alu 1 289 -22 40 37 0 0 chr6 164935416 164935470 -17479772 + AT_rich Low_complexity Low_complexity 1 54 0 2337 100 0 3 chr6 164936692 164937001 -17478241 + AluSg SINE Alu 1 308 -2 326 238 16 0 chr6 164938591 164938654 -17476588 - L2 LINE L2 -19 3294 3231 1674 137 0 0 chr6 164938867 164939101 -17476141 + AluJb SINE Alu 1 234 -78 21 36 0 0 chr6 164939111 164939139 -17476103 + AT_rich Low_complexity Low_complexity 1 28 0 1903 154 0 3 chr6 164939185 164939478 -17475764 + AluJb SINE Alu 1 292 -20 248 289 91 102 chr6 164939547 164939734 -17475508 - L2 LINE L2 -145 3127 2943 21 36 0 0 chr6 164940941 164940969 -17474273 + AT_rich Low_complexity Low_complexity 1 28 0 1593 108 4 22 chr6 164941146 164941378 -17473864 + AluSx SINE Alu 1 228 -84 1719 119 63 14 chr6 164941408 164941694 -17473548 + AluSx SINE Alu 1 300 -12 1045 152 12 18 chr6 164941694 164941859 -17473383 + AluSg/x SINE Alu 132 295 -15 1798 146 14 7 chr6 164942081 164942361 -17472881 - AluJo SINE Alu -30 282 1 557 245 25 23 chr6 164942369 164942553 -17472689 - L1MA10 LINE L1 -1 6333 5991 21 36 0 0 chr6 164942753 164942781 -17472461 + AT_rich Low_complexity Low_complexity 1 28 0 298 263 95 58 chr6 164943205 164943342 -17471900 + MIR3 SINE MIR 54 195 -13 271 222 0 154 chr6 164943950 164944067 -17471175 - LTR67 LTR ERVL -415 142 44 565 273 32 50 chr6 164944320 164944359 -17470883 + MER115 DNA AcHobo 31 69 -624 1877 185 128 0 chr6 164944359 164944742 -17470500 + MSTB1 LTR MaLR 1 432 0 565 273 32 50 chr6 164944742 164944922 -17470320 + MER115 DNA AcHobo 69 246 -447 30 59 0 0 chr6 164946092 164946143 -17469099 + AT_rich Low_complexity Low_complexity 1 51 0 2295 118 0 0 chr6 164946874 164947178 -17468064 - AluSx SINE Alu -8 304 1 393 315 0 63 chr6 164947184 164947327 -17467915 + L2 LINE L2 3118 3251 -21 311 264 35 0 chr6 164947352 164947439 -17467803 + L2 LINE L2 3219 3308 -5 234 254 0 0 chr6 164948057 164948124 -17467118 + (CA)n Simple_repeat Simple_repeat 1 67 0 2285 101 3 0 chr6 164948198 164948495 -17466747 + AluSx SINE Alu 1 298 -14 191 267 30 139 chr6 164948556 164948642 -17466600 - L2 LINE L2 0 3313 3252 1736 149 3 41 chr6 164948642 164948937 -17466305 + AluJb SINE Alu 1 284 -28 191 267 30 139 chr6 164948937 164949015 -17466227 - L2 LINE L2 -61 3252 3167 475 331 21 0 chr6 164949132 164949277 -17465965 - MIR SINE MIR -67 195 48 181 191 24 24 chr6 164949586 164949628 -17465614 + MER5C DNA MER1_type 21 62 -262 281 240 94 10 chr6 164950620 164950716 -17464526 + HERVL40 LTR ERVL 4 107 -5423 583 279 85 12 chr6 164950895 164951153 -17464089 + HERVL40 LTR ERVL 919 1195 -4335 821 263 37 8 chr6 164951472 164951715 -17463527 + HERVL40 LTR ERVL 1368 1617 -3913 553 193 175 42 chr6 164951815 164951981 -17463261 + HERVL40 LTR ERVL 2693 2880 -2650 1946 119 0 28 chr6 164952015 164952330 -17462912 - AluSx SINE Alu 0 312 6 1166 283 46 3 chr6 164952346 164952692 -17462550 + LTR40c LTR ERVL 98 458 -7 297 128 0 0 chr6 164952794 164952841 -17462401 + (T)n Simple_repeat Simple_repeat 1 47 0 207 354 80 26 chr6 164953531 164953644 -17461598 + MIR SINE MIR 16 134 -74 427 315 61 17 chr6 164955540 164955721 -17459521 - MIR3 SINE MIR -2 206 18 3865 146 68 8 chr6 164955842 164956548 -17458694 + L1MC3 LINE L1 7032 7779 -6 1839 149 0 4 chr6 164956575 164956843 -17458399 - AluSx SINE Alu -45 267 1 584 183 0 24 chr6 164957101 164957227 -17458015 + L2 LINE L2 3190 3312 -1 356 340 6 13 chr6 164957333 164957489 -17457753 + MARNA DNA Mariner 24 178 -408 277 305 126 48 chr6 164957761 164957928 -17457314 + L2 LINE L2 3090 3269 -3 454 272 25 31 chr6 164957942 164958104 -17457138 - MARNA DNA Mariner -172 414 254 337 223 83 33 chr6 164958273 164958394 -17456848 - L2 LINE L2 -3 3310 3184 201 39 0 0 chr6 164958674 164958700 -17456542 + (A)n Simple_repeat Simple_repeat 1 26 0 419 244 43 0 chr6 164958897 164959012 -17456230 - Charlie1 DNA MER1_type -22 2739 2620 * 1063 209 43 4 chr6 164958991 164959226 -17456016 - Charlie1 DNA MER1_type -2517 244 1 273 259 61 53 chr6 164959241 164959372 -17455870 - MARNA DNA Mariner -259 327 196 379 141 0 16 chr6 164959705 164959769 -17455473 + AluSp SINE Alu 126 188 -115 489 273 209 9 chr6 164960715 164961059 -17454183 + LTR16A1 LTR ERVL 1 413 -44 188 167 0 56 chr6 164961314 164961350 -17453892 + L2 LINE L2 3265 3298 -15 1798 124 0 118 chr6 164961717 164962063 -17453179 + AluY SINE Alu 4 308 -3 709 309 26 7 chr6 164962499 164962771 -17452471 - MARNA DNA Mariner -48 538 262 646 319 70 4 chr6 164963082 164963311 -17451931 + MIR SINE MIR 19 262 0 2430 75 0 3 chr6 164963445 164963739 -17451503 - AluSg SINE Alu -17 293 1 350 267 23 0 chr6 164963936 164964022 -17451220 - HsTC2 DNA Tc2 -1810 88 1 223 265 0 29 chr6 164964721 164964800 -17450442 + GA-rich Low_complexity Low_complexity 4 132 0 2191 113 0 22 chr6 164965192 164965511 -17449731 + AluSx SINE Alu 1 312 0 2204 120 0 3 chr6 164966436 164966736 -17448506 + AluSx SINE Alu 1 299 -13 316 250 88 37 chr6 164967630 164967766 -17447476 - MLT1L LTR MaLR -7 608 466 261 299 0 13 chr6 164968087 164968164 -17447078 - LTR67 LTR ERVL -54 503 428 983 208 62 59 chr6 164969253 164969410 -17445832 - L1ME3A LINE L1 -7 6163 6003 3307 49 0 5 chr6 164969410 164969798 -17445444 - L1PA7 LINE L1 0 6154 5769 983 208 62 59 chr6 164969798 164969928 -17445314 - L1ME3A LINE L1 -167 6003 5875 6725 124 50 46 chr6 164969937 164970212 -17445030 + Tigger3b DNA MER2_type 2 274 -2754 2326 91 0 13 chr6 164970212 164970520 -17444722 - AluY SINE Alu -7 304 1 6725 124 50 46 chr6 164970520 164970919 -17444323 + Tigger3b DNA MER2_type 274 670 -2358 2063 134 3 0 chr6 164970919 164971218 -17444024 + AluSx SINE Alu 1 300 -12 6725 124 50 46 chr6 164971218 164971542 -17443700 + Tigger3b DNA MER2_type 670 1009 -2019 2304 70 7 3 chr6 164971542 164971828 -17443414 + AluY SINE Alu 1 287 -24 6725 124 50 46 chr6 164971828 164972033 -17443209 + Tigger3b DNA MER2_type 1009 1212 -19 1820 102 0 0 chr6 164972033 164972269 -17442973 + AluSg SINE Alu 52 287 -23 723 273 86 9 chr6 164972296 164972383 -17442859 - L1ME3A LINE L1 -300 5870 5791 189 0 0 0 chr6 164972383 164972404 -17442838 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 723 273 86 9 chr6 164972404 164972536 -17442706 - L1ME3A LINE L1 -379 5791 5634 310 111 22 0 chr6 164972542 164972587 -17442655 + MLT1D LTR MaLR 453 498 -7 1016 294 95 16 chr6 164972597 164973168 -17442074 - L1ME3A LINE L1 -753 5393 4778 2338 167 37 114 chr6 164973172 164973417 -17441825 + MER68 LTR ERV1 5 267 -295 1953 142 7 3 chr6 164973417 164973712 -17441530 + AluSx SINE Alu 1 296 -16 2338 167 37 114 chr6 164973712 164974054 -17441188 + MER68 LTR ERV1 267 547 -15 1328 258 64 37 chr6 164974076 164974666 -17440576 - L1ME3A LINE L1 -1365 4781 4176 315 75 0 0 chr6 164974668 164974708 -17440534 + MLT1B LTR MaLR 1 40 -350 485 216 10 0 chr6 164974969 164975066 -17440176 + MLT1B LTR MaLR 293 390 0 372 253 48 75 chr6 164975080 164975143 -17440099 - MIR SINE MIR -5 257 194 1984 88 47 15 chr6 164975143 164975417 -17439825 - AluSx SINE Alu -16 296 14 372 253 48 75 chr6 164975417 164975539 -17439703 - MIR SINE MIR -68 194 77 304 188 12 12 chr6 164975670 164975755 -17439487 + (TA)n Simple_repeat Simple_repeat 1 85 0 248 38 19 57 chr6 164975862 164975915 -17439327 + (TA)n Simple_repeat Simple_repeat 1 51 0 261 0 0 0 chr6 164975917 164975946 -17439296 + (CA)n Simple_repeat Simple_repeat 2 30 0 2274 121 0 0 chr6 164976766 164977071 -17438171 + AluSx SINE Alu 1 305 -7 2521 245 49 17 chr6 164977374 164978071 -17437171 + L1MB7 LINE L1 5440 6158 -26 815 189 0 8 chr6 164978072 164978199 -17437043 + FLAM_C SINE Alu 2 127 -16 333 68 0 0 chr6 164979347 164979391 -17435851 + (CA)n Simple_repeat Simple_repeat 2 45 0 2352 67 7 0 chr6 164979797 164980097 -17435145 + AluY SINE Alu 1 302 -9 4886 134 8 4 chr6 164980636 164981360 -17433882 - Tigger1 DNA MER2_type -1687 731 5 3706 152 21 30 chr6 164981363 164981500 -17433742 - L1MA8 LINE L1 -366 5925 5788 2787 92 28 8 chr6 164981500 164981857 -17433385 - THE1B LTR MaLR 0 364 1 3706 152 21 30 chr6 164981857 164982828 -17432414 - L1MA8 LINE L1 -503 5788 4831 1417 189 36 27 chr6 164983189 164983490 -17431752 - AluJo SINE Alu -8 304 1 365 266 177 8 chr6 164985101 164985225 -17430017 + MIR3 SINE MIR 4 148 -60 1961 142 3 0 chr6 164985231 164985520 -17429722 + AluSx SINE Alu 1 290 -22 2312 89 0 16 chr6 164985521 164985837 -17429405 + AluY SINE Alu 1 311 0 217 297 198 0 chr6 164986130 164986221 -17429021 + L2 LINE L2 3163 3271 -1 234 0 0 0 chr6 164986381 164986407 -17428835 + (CTG)n Simple_repeat Simple_repeat 2 27 0 3263 93 18 16 chr6 164986449 164986890 -17428352 + MLT2A1 LTR ERVL 1 442 -2 1530 133 86 8 chr6 164986890 164987145 -17428097 + AluJo SINE Alu 18 292 -20 345 47 0 0 chr6 164987193 164987236 -17428006 + (ATG)n Simple_repeat Simple_repeat 2 44 0 5056 139 24 55 chr6 164987552 164988365 -17426877 - L1MB1 LINE L1 0 6168 5369 2380 80 0 26 chr6 164988365 164988678 -17426564 + AluY SINE Alu 1 305 -6 5056 139 24 55 chr6 164988678 164988928 -17426314 - L1MB1 LINE L1 -799 5369 5113 619 324 45 31 chr6 164989007 164989098 -17426144 + L1M4 LINE L1 4016 4104 -2042 2221 104 0 3 chr6 164989098 164989395 -17425847 - AluSg SINE Alu -14 296 1 619 324 45 31 chr6 164989395 164989819 -17425423 + L1M4 LINE L1 4104 4538 -1608 2351 95 3 0 chr6 164989959 164990285 -17424957 + AluSp SINE Alu 1 327 0 359 243 111 50 chr6 164990473 164990654 -17424588 + MIR SINE MIR 26 217 -45 30 45 0 0 chr6 164990654 164990698 -17424544 + AT_rich Low_complexity Low_complexity 1 44 0 245 244 171 0 chr6 164991070 164991152 -17424090 + MLT1J2 LTR MaLR 298 393 -57 1785 125 82 11 chr6 164991405 164991684 -17423558 - AluJb SINE Alu -13 299 1 2656 43 0 3 chr6 164991836 164992141 -17423101 + AluY SINE Alu 1 304 -7 214 247 0 68 chr6 164993186 164993223 -17422019 - MER5A DNA MER1_type -24 165 134 2446 171 42 7 chr6 164993223 164993651 -17421591 - LTR47B LTR ERVL 0 443 1 214 247 0 68 chr6 164993651 164993686 -17421556 - MER5A DNA MER1_type -55 134 98 1722 163 3 20 chr6 164994373 164994667 -17420575 - AluJo SINE Alu -23 289 1 562 229 97 7 chr6 164995023 164995167 -17420075 + MLT1C LTR MaLR 1 157 -310 271 250 0 0 chr6 164995169 164995225 -17420017 + MER91 DNA MER1_type 85 140 0 1888 135 0 40 chr6 164995276 164995580 -17419662 - AluSx SINE Alu -18 294 3 2315 91 7 0 chr6 164996237 164996533 -17418709 - AluSg SINE Alu -12 298 1 1266 182 3 147 chr6 164997008 164997349 -17417893 + AluJo SINE Alu 2 293 -9 202 79 32 79 chr6 164997373 164997394 -17417848 + (TAAA)n Simple_repeat Simple_repeat 1 21 -39 2082 120 7 0 chr6 164997394 164997677 -17417565 + AluSc SINE Alu 1 285 -24 202 79 32 79 chr6 164997677 164997718 -17417524 + (TAAA)n Simple_repeat Simple_repeat 21 60 0 208 175 175 38 chr6 164997794 164997874 -17417368 + MIR SINE MIR 79 169 -93 460 110 122 0 chr6 164998168 164998250 -17416992 - L1MB3 LINE L1 0 6183 6092 2111 123 6 22 chr6 164998251 164998633 -17416609 + AluSx SINE Alu 1 377 0 631 172 6 25 chr6 164998633 164998796 -17416446 + GA-rich Low_complexity Low_complexity 3 162 0 228 330 21 0 chr6 164998828 164998922 -17416320 + L1ME3 LINE L1 4762 4857 -1289 2483 240 71 61 chr6 164998945 164999522 -17415720 + L1ME3 LINE L1 4911 5481 -681 2360 91 0 0 chr6 164999522 164999819 -17415423 + AluSq SINE Alu 1 297 -16 2483 240 71 61 chr6 164999819 165000480 -17414762 + L1ME3 LINE L1 5481 6160 -2 1875 152 0 14 chr6 165000522 165000819 -17414423 - AluJo SINE Alu -19 293 1 990 118 0 7 chr6 165001634 165001770 -17413472 + AluJb SINE Alu 1 135 -177 1809 126 72 4 chr6 165001770 165002047 -17413195 + AluJb SINE Alu 1 296 -16 2414 80 0 3 chr6 165003392 165003694 -17411548 + AluSg1 SINE Alu 1 301 -8 455 251 135 43 chr6 165003754 165003961 -17411281 - Charlie8 DNA MER1_type -2153 264 39 267 330 120 0 chr6 165004001 165004234 -17411008 + HAL1 LINE L1 2245 2505 -2 2112 114 0 20 chr6 165004959 165005257 -17409985 + AluSg SINE Alu 1 292 -18 451 200 55 85 chr6 165005311 165005419 -17409823 - MIR SINE MIR -91 171 67 1775 160 3 41 chr6 165005419 165005747 -17409495 - AluJb SINE Alu 0 317 1 451 200 55 85 chr6 165005747 165005802 -17409440 - MIR SINE MIR -195 67 12 707 165 83 0 chr6 165007071 165007192 -17408050 - FLAM_C SINE Alu -11 132 2 2134 135 0 3 chr6 165007725 165008036 -17407206 - AluSx SINE Alu -2 310 1 664 268 41 37 chr6 165008252 165008395 -17406847 + MIR SINE MIR 9 156 -106 1890 142 7 4 chr6 165008395 165008704 -17406538 + AluJb SINE Alu 3 312 0 664 268 41 37 chr6 165008704 165008802 -17406440 + MIR SINE MIR 156 252 -10 248 244 61 76 chr6 165008894 165008946 -17406296 + MER5B DNA MER1_type 50 101 -77 2251 111 3 0 chr6 165008946 165009243 -17405999 + AluSx SINE Alu 1 298 -14 248 244 61 76 chr6 165009243 165009321 -17405921 + MER5B DNA MER1_type 101 178 0 4032 94 3 43 chr6 165009659 165010030 -17405212 + MER41A LTR ERV1 1 342 -212 2200 107 30 0 chr6 165010030 165010329 -17404913 + AluSg SINE Alu 1 308 -2 4032 94 3 43 chr6 165010329 165010534 -17404708 + MER41A LTR ERV1 342 554 0 2026 132 3 20 chr6 165011028 165011331 -17403911 - AluSx SINE Alu -14 298 1 1795 114 114 0 chr6 165011390 165011663 -17403579 - AluSx SINE Alu -8 304 1 915 130 0 0 chr6 165011675 165011798 -17403444 - FLAM_C SINE Alu -20 123 1 1814 282 109 20 chr6 165012012 165012442 -17402800 - L1ME3A LINE L1 -19 6151 5761 1989 118 25 76 chr6 165012442 165012509 -17402733 + MER1B DNA MER1_type 1 70 -2640 2194 104 0 0 chr6 165012509 165012814 -17402428 + AluSg SINE Alu 1 305 0 1989 118 25 76 chr6 165012814 165013100 -17402142 + MER1B DNA MER1_type 70 337 0 1814 282 109 20 chr6 165013100 165013624 -17401618 - L1ME3A LINE L1 -409 5761 5118 283 279 45 55 chr6 165013744 165013945 -17401297 - L1ME3A LINE L1 -1071 5075 4877 2184 125 0 0 chr6 165014847 165015143 -17400099 - AluSx SINE Alu -16 296 1 1713 156 0 8 chr6 165015378 165015641 -17399601 - AluJb SINE Alu -46 266 6 1418 122 21 134 chr6 165015810 165016138 -17399104 + AluJo SINE Alu 5 295 -7 2336 112 0 0 chr6 165016164 165016468 -17398774 - AluSx SINE Alu -8 304 1 6645 59 9 60 chr6 165016992 165018696 -17396546 + SVA Other Other 1 1382 -4 2676 30 0 0 chr6 165019112 165019407 -17395835 - AluY SINE Alu -16 295 1 184 261 72 0 chr6 165020039 165020108 -17395134 - MER5A DNA MER1_type -57 132 59 246 116 0 0 chr6 165020510 165020553 -17394689 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 2132 120 0 0 chr6 165020885 165021191 -17394051 + AluSx SINE Alu 1 306 0 360 0 0 0 chr6 165021192 165021232 -17394010 + (CA)n Simple_repeat Simple_repeat 2 41 0 2426 80 7 0 chr6 165021654 165021955 -17393287 + AluSp SINE Alu 1 303 -10 516 182 42 195 chr6 165022112 165022248 -17392994 + MER102a DNA MER1_type 64 127 -1290 1747 123 7 63 chr6 165022248 165022399 -17392843 - AluSq SINE Alu -29 284 157 2350 79 7 7 chr6 165022399 165022691 -17392551 - AluSg SINE Alu -18 292 1 1747 123 7 63 chr6 165022691 165022840 -17392402 - AluSq SINE Alu -156 157 1 516 182 42 195 chr6 165022840 165023016 -17392226 + MER102a DNA MER1_type 127 328 -2 21 0 0 0 chr6 165023221 165023242 -17392000 + AT_rich Low_complexity Low_complexity 1 21 0 2100 121 7 10 chr6 165023424 165023721 -17391521 + AluSx SINE Alu 1 296 -16 288 105 0 35 chr6 165023862 165023919 -17391323 + Alu SINE Alu 246 300 0 901 181 0 0 chr6 165024478 165024616 -17390626 - AluJo/FRAM SINE Alu -44 268 131 1187 147 210 20 chr6 165024616 165024868 -17390374 - AluYa8 SINE Alu 0 300 1 259 317 21 28 chr6 165024868 165025010 -17390232 - MIR SINE MIR -63 145 11 1493 97 5 0 chr6 165025065 165025260 -17389982 + AluSq SINE Alu 1 196 -117 1528 140 118 11 chr6 165025341 165025612 -17389630 + AluSg1 SINE Alu 1 300 -9 2235 127 0 9 chr6 165025731 165026046 -17389196 + AluSx SINE Alu 1 312 0 24 32 0 0 chr6 165026103 165026134 -17389108 + AT_rich Low_complexity Low_complexity 1 31 0 1591 194 0 17 chr6 165026463 165026757 -17388485 + AluJo SINE Alu 6 294 -18 1724 176 57 3 chr6 165027342 165027638 -17387604 + AluJb SINE Alu 1 312 0 2475 87 0 0 chr6 165027783 165028082 -17387160 - AluSg SINE Alu -11 299 1 435 248 76 0 chr6 165028424 165028529 -17386713 + MER81 DNA DNA 2 114 0 1408 213 44 0 chr6 165028678 165028951 -17386291 + AluJo SINE Alu 2 286 -26 183 229 25 0 chr6 165028951 165029069 -17386173 + (TA)n Simple_repeat Simple_repeat 1 121 0 483 333 29 35 chr6 165029158 165029470 -17385772 + HAL1 LINE L1 1408 1717 -790 2032 93 59 0 chr6 165029564 165029834 -17385408 + AluSx SINE Alu 27 312 0 2107 120 0 32 chr6 165030303 165030612 -17384630 - AluSx SINE Alu -13 299 1 2029 109 3 40 chr6 165030908 165031230 -17384012 - AluSg SINE Alu 0 310 1 675 263 79 49 chr6 165031532 165031939 -17383303 - HAL1 LINE L1 -933 1574 1156 372 278 142 37 chr6 165031955 165032117 -17383125 + MER5A DNA MER1_type 11 189 0 439 338 89 14 chr6 165032123 165032416 -17382826 - HAL1 LINE L1 -1374 1133 819 1361 86 25 0 chr6 165032420 165032617 -17382625 - L1MA4 LINE L1 -18 6282 6081 844 182 51 84 chr6 165033105 165033148 -17382094 - MLT1B LTR MaLR -183 207 164 2243 123 10 0 chr6 165033148 165033457 -17381785 - AluSx SINE Alu 0 312 1 844 182 51 84 chr6 165033457 165033627 -17381615 - MLT1B LTR MaLR -226 164 1 825 281 149 17 chr6 165033635 165034045 -17381197 + L2 LINE L2 1129 1592 -1722 330 273 110 75 chr6 165034125 165034257 -17380985 + L1M4 LINE L1 4630 4756 -1390 1841 151 3 21 chr6 165034257 165034568 -17380674 + AluJo SINE Alu 1 306 0 330 273 110 75 chr6 165034568 165034742 -17380500 + L1M4 LINE L1 4756 4948 -1198 264 295 19 48 chr6 165034754 165034961 -17380281 + L1M4 LINE L1 4565 4765 -1381 1728 146 0 47 chr6 165035315 165035616 -17379626 + AluJb SINE Alu 1 287 -25 195 42 0 0 chr6 165035617 165035641 -17379601 + (GA)n Simple_repeat Simple_repeat 1 24 0 220 232 18 0 chr6 165035864 165035920 -17379322 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 310 205 196 138 chr6 165036524 165036836 -17378406 + MER102a DNA MER1_type 1 330 0 612 222 69 0 chr6 165037565 165037709 -17377533 - MER5A DNA MER1_type -3 186 33 890 137 0 0 chr6 165037866 165037990 -17377252 - FLAM_C SINE Alu -19 124 1 207 0 0 0 chr6 165038237 165038260 -17376982 + (CA)n Simple_repeat Simple_repeat 2 24 0 591 268 123 31 chr6 165039192 165039706 -17375536 + L2 LINE L2 2568 3138 -175 2459 78 0 16 chr6 165040159 165040467 -17374775 - AluSq SINE Alu -10 303 1 1450 171 19 68 chr6 165041316 165041625 -17373617 + AluJo SINE Alu 3 296 -16 387 180 289 16 chr6 165041919 165042047 -17373195 - MER5A DNA MER1_type 0 189 27 302 235 99 0 chr6 165042430 165042511 -17372731 - MIR SINE MIR -161 101 13 225 226 157 29 chr6 165042586 165042688 -17372554 + MIR SINE MIR 75 189 -73 751 153 24 24 chr6 165042701 165042825 -17372417 + FLAM_C SINE Alu 4 127 -16 205 180 0 40 chr6 165042861 165042911 -17372331 + MIR SINE MIR 205 252 -10 2547 53 0 10 chr6 165043467 165043770 -17371472 - AluY SINE Alu -11 300 1 226 203 14 29 chr6 165044116 165044185 -17371057 + MLT1L LTR MaLR 12 79 -536 289 201 23 14 chr6 165044204 165044353 -17370889 + GA-rich Low_complexity Low_complexity 1 150 0 242 300 47 53 chr6 165044362 165044552 -17370690 + MLT1J LTR MaLR 114 302 -209 212 236 125 14 chr6 165044969 165045041 -17370201 + MIR SINE MIR 70 149 -113 219 36 0 0 chr6 165045930 165045958 -17369284 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1491 157 37 37 chr6 165046109 165046433 -17368809 - MER33 DNA MER1_type 0 324 1 2038 119 0 80 chr6 165047563 165047900 -17367342 + AluSq SINE Alu 1 310 -3 644 152 0 0 chr6 165047801 165047902 -17367340 + AluSp/q SINE Alu 212 369 0 402 53 0 18 chr6 165047902 165047959 -17367283 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 27 62 0 0 chr6 165048072 165048120 -17367122 + AT_rich Low_complexity Low_complexity 1 48 0 181 200 100 0 chr6 165049508 165049548 -17365694 + MIR SINE MIR 75 118 -90 294 29 0 0 chr6 165049638 165049673 -17365569 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1023 129 0 26 chr6 165049680 165049835 -17365407 - AluJo SINE Alu -43 269 119 185 143 14 57 chr6 165051637 165051707 -17363535 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 257 164 27 73 chr6 165051731 165051841 -17363401 + (TAAA)n Simple_repeat Simple_repeat 2 106 0 185 143 14 57 chr6 165051909 165051979 -17363263 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 221 170 28 75 chr6 165052003 165052109 -17363133 + (TAAA)n Simple_repeat Simple_repeat 2 102 0 398 304 94 9 chr6 165052663 165052889 -17362353 + MIR SINE MIR 23 262 0 1856 132 39 35 chr6 165055449 165055760 -17359482 + AluSx SINE Alu 1 312 0 2429 89 0 0 chr6 165056593 165056895 -17358347 - AluSq SINE Alu -11 302 1 359 322 89 19 chr6 165057846 165058088 -17357154 + MIR SINE MIR 1 256 -6 2175 116 0 3 chr6 165058645 165058939 -17356303 - AluY SINE Alu -18 293 1 412 275 106 12 chr6 165058957 165058994 -17356248 - MIR SINE MIR -87 175 143 2303 101 0 0 chr6 165058994 165059282 -17355960 + AluSc SINE Alu 8 295 -14 412 275 106 12 chr6 165059282 165059404 -17355838 - MIR SINE MIR -119 143 1 241 333 13 0 chr6 165059879 165059957 -17355285 + MIR SINE MIR 46 124 -84 214 186 0 0 chr6 165060230 165060273 -17354969 + T-rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr6 165060314 165060338 -17354904 + AT_rich Low_complexity Low_complexity 1 24 0 331 309 140 32 chr6 165060357 165060635 -17354607 - L2 LINE L2 0 3313 3006 523 222 185 63 chr6 165061360 165061520 -17353722 - MER113 DNA MER1_type? -127 394 255 1758 135 0 8 chr6 165061520 165061780 -17353462 - AluSx SINE Alu -20 292 35 523 222 185 63 chr6 165061780 165061970 -17353272 - MER113 DNA MER1_type? -266 255 1 3193 175 18 32 chr6 165062065 165062599 -17352643 + L1MB7 LINE L1 5433 5958 -226 1915 142 11 3 chr6 165062599 165062881 -17352361 + AluSx SINE Alu 29 312 0 3193 175 18 32 chr6 165062881 165062969 -17352273 + L1MB7 LINE L1 5958 6046 -138 1230 92 55 0 chr6 165063268 165063432 -17351810 + AluSq SINE Alu 1 173 -140 197 316 13 0 chr6 165063524 165063603 -17351639 + L2 LINE L2 2596 2675 -639 1059 170 10 39 chr6 165063805 165064011 -17351231 + MER58A DNA MER1_type 5 204 -20 746 238 24 15 chr6 165064274 165064480 -17350762 - L1ME1 LINE L1 -4 6162 5955 684 49 41 24 chr6 165064876 165064999 -17350243 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 870 174 30 89 chr6 165067318 165067554 -17347688 + MIR SINE MIR 20 241 -21 309 266 21 11 chr6 165067555 165067649 -17347593 - MIR SINE MIR -119 143 49 892 139 11 50 chr6 165067890 165068070 -17347172 - L1MB8 LINE L1 -2 6176 6004 799 144 0 104 chr6 165068141 165068314 -17346928 - L1MB8 LINE L1 -186 5992 5838 189 330 227 0 chr6 165068327 165068530 -17346712 + L2 LINE L2 2719 2967 -347 595 74 0 0 chr6 165068931 165069012 -17346230 - AluY SINE Alu -1 310 230 1624 37 0 21 chr6 165069012 165069203 -17346039 - AluY SINE Alu -124 187 1 215 317 106 21 chr6 165069577 165069719 -17345523 + MIR3 SINE MIR 55 208 0 2019 103 4 7 chr6 165070265 165070546 -17344696 + AluSc SINE Alu 1 280 -29 2352 102 0 3 chr6 165070690 165070995 -17344247 + AluSg SINE Alu 1 304 -6 256 276 55 35 chr6 165071230 165071375 -17343867 - MIR SINE MIR -23 239 92 351 205 60 0 chr6 165072043 165072126 -17343116 + L1M4 LINE L1 3105 3192 -2954 1801 142 24 3 chr6 165073140 165073428 -17341814 - AluJb SINE Alu -18 294 1 27 73 0 0 chr6 165073797 165073852 -17341390 + AT_rich Low_complexity Low_complexity 1 55 0 2611 39 0 23 chr6 165074193 165074502 -17340740 - AluY SINE Alu -9 302 1 225 304 13 0 chr6 165075404 165075483 -17339759 - MER116 DNA Mariner 0 80 1 2376 81 10 0 chr6 165076196 165076492 -17338750 + AluSp SINE Alu 1 299 -14 527 247 84 22 chr6 165076741 165076919 -17338323 - MIR SINE MIR -9 253 65 1627 136 64 93 chr6 165078560 165078936 -17336306 + MLT1A1 LTR MaLR 1 365 0 683 297 55 27 chr6 165079571 165079864 -17335378 + MER20B DNA MER1_type 55 355 -428 443 283 171 10 chr6 165079875 165080080 -17335162 + MIR SINE MIR 13 250 -12 407 292 88 15 chr6 165080100 165080237 -17335005 + MER20B DNA MER1_type 370 516 -267 1759 111 0 0 chr6 165080594 165080819 -17334423 + AluSg/x SINE Alu 73 297 -15 277 118 0 20 chr6 165081594 165081645 -17333597 - Alu SINE Alu 0 300 251 1033 175 8 2 chr6 165082304 165082562 -17332680 - AluJb SINE Alu -2 310 2 207 0 0 0 chr6 165082684 165082707 -17332535 + (A)n Simple_repeat Simple_repeat 1 23 0 2327 84 0 0 chr6 165082847 165083134 -17332108 - AluSg SINE Alu -23 287 1 1395 184 59 0 chr6 165083346 165083617 -17331625 + L1MB7 LINE L1 5893 6179 -5 760 168 0 46 chr6 165084383 165084514 -17330728 + FLAM_A SINE Alu 1 125 -8 1898 167 0 10 chr6 165084573 165084879 -17330363 + AluJo SINE Alu 1 303 -9 305 281 75 41 chr6 165084983 165085129 -17330113 - MIR3 SINE MIR -34 174 24 2151 106 44 0 chr6 165086176 165086469 -17328773 + AluSx SINE Alu 1 306 -6 333 0 0 0 chr6 165086897 165086934 -17328308 + (CA)n Simple_repeat Simple_repeat 2 38 0 1772 178 3 19 chr6 165086972 165087287 -17327955 - AluJo SINE Alu -2 310 1 409 158 50 193 chr6 165087391 165087509 -17327733 + MER69A DNA AcHobo 4 83 -2443 2084 138 0 3 chr6 165087509 165087807 -17327435 - AluJb SINE Alu -15 297 1 409 158 50 193 chr6 165087807 165087890 -17327352 + MER69A DNA AcHobo 83 176 -1 458 249 150 6 chr6 165088386 165088559 -17326683 + MIR SINE MIR 9 206 -56 1999 144 0 16 chr6 165088569 165088881 -17326361 + AluJo SINE Alu 1 307 -5 476 228 85 61 chr6 165088934 165088987 -17326255 + MIR SINE MIR 24 74 -188 2306 109 0 0 chr6 165088987 165089289 -17325953 - AluSx SINE Alu -10 302 1 476 228 85 61 chr6 165089289 165089458 -17325784 + MIR SINE MIR 74 244 -18 668 191 0 29 chr6 165089755 165089891 -17325351 + AluJb SINE Alu 2 133 -179 432 264 8 33 chr6 165091034 165091155 -17324087 - MIR SINE MIR -143 119 2 1601 175 41 7 chr6 165091311 165091602 -17323640 + MLT1B LTR MaLR 1 301 -89 409 178 33 0 chr6 165091841 165091931 -17323311 + LTR16A1 LTR ERVL 60 152 -305 466 239 68 18 chr6 165091989 165092152 -17323090 + LTR16A1 LTR ERVL 287 457 0 3425 127 51 97 chr6 165092513 165092794 -17322448 + L1MA8 LINE L1 5080 5372 -919 1610 176 22 35 chr6 165092794 165093106 -17322136 - AluJo SINE Alu -4 308 1 3425 127 51 97 chr6 165093106 165093563 -17321679 + L1MA8 LINE L1 5372 5807 -484 2366 100 0 6 chr6 165093563 165093874 -17321368 + AluSq SINE Alu 5 313 0 3425 127 51 97 chr6 165093874 165094023 -17321219 + L1MA8 LINE L1 5807 5961 -330 350 236 136 18 chr6 165094266 165094376 -17320866 + MER97a DNA MER1_type? 1 123 -771 636 262 58 0 chr6 165094583 165094713 -17320529 + MER3 DNA MER1_type 16 160 -49 2529 62 3 3 chr6 165094713 165095019 -17320223 - AluY SINE Alu -5 306 1 636 262 58 0 chr6 165095019 165095060 -17320182 + MER3 DNA MER1_type 160 197 -12 2083 125 24 0 chr6 165095991 165096286 -17318956 - AluSx SINE Alu -10 302 1 2720 39 3 0 chr6 165096679 165096989 -17318253 + AluY SINE Alu 1 311 0 198 143 0 0 chr6 165097860 165097895 -17317347 + (TCC)n Simple_repeat Simple_repeat 2 36 0 734 165 0 65 chr6 165099148 165099318 -17315924 - L1MC2 LINE L1 -11 6333 6175 2224 113 10 0 chr6 165099318 165099618 -17315624 + AluSx SINE Alu 1 303 -9 5593 169 9 45 chr6 165099618 165100835 -17314407 - L1MC2 LINE L1 -13 6331 4988 1901 161 3 3 chr6 165103292 165103590 -17311652 - AluJb SINE Alu -14 298 1 328 266 38 38 chr6 165104037 165104193 -17311049 + MIR SINE MIR 10 165 -58 1464 162 63 22 chr6 165104484 165104755 -17310487 - AluJb SINE Alu -29 283 2 721 200 23 0 chr6 165104815 165104945 -17310297 - FLAM_A SINE Alu 0 133 1 2108 117 3 7 chr6 165105703 165106011 -17309231 - AluSq SINE Alu -6 307 1 649 74 0 0 chr6 165106309 165106390 -17308852 - AluY SINE Alu -228 82 2 240 214 0 0 chr6 165106392 165106448 -17308794 - MIR SINE MIR -59 203 148 22 0 0 0 chr6 165106506 165106528 -17308714 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr6 165106673 165106698 -17308544 + (CA)n Simple_repeat Simple_repeat 2 26 0 579 325 16 16 chr6 165106775 165106966 -17308276 - MIR SINE MIR -65 197 7 538 269 101 22 chr6 165107441 165107709 -17307533 + L2 LINE L2 3020 3308 -5 1740 188 3 7 chr6 165107978 165108276 -17306966 + AluJo SINE Alu 1 297 -15 562 262 79 65 chr6 165108963 165109253 -17305989 + MLT1I LTR MaLR 114 407 -2 222 37 0 0 chr6 165109611 165109638 -17305604 + (A)n Simple_repeat Simple_repeat 1 27 0 1274 118 0 0 chr6 165109851 165110029 -17305213 - AluSg/x SINE Alu -11 301 124 2417 43 0 0 chr6 165110713 165111026 -17304216 + AluY SINE Alu 5 317 0 904 145 0 14 chr6 165111355 165111500 -17303742 + FLAM_C SINE Alu 1 143 0 1905 107 7 7 chr6 165111749 165112020 -17303222 + AluSc SINE Alu 1 271 -38 2074 110 7 20 chr6 165112132 165112424 -17302818 - AluSx SINE Alu -24 288 1 251 276 0 0 chr6 165113390 165113448 -17301794 + L2 LINE L2 3214 3271 -1 2193 65 22 11 chr6 165113699 165114007 -17301235 - AluSg SINE Alu 0 311 1 27 0 0 0 chr6 165115102 165115129 -17300113 + AT_rich Low_complexity Low_complexity 1 27 0 381 116 0 0 chr6 165115609 165115678 -17299564 + (A)n Simple_repeat Simple_repeat 1 69 0 308 322 34 0 chr6 165115698 165115844 -17299398 + L1M4 LINE L1 3043 3193 -2953 267 309 22 36 chr6 165115844 165116054 -17299188 + GA-rich Low_complexity Low_complexity 1 207 0 38 39 0 0 chr6 165116058 165116110 -17299132 + AT_rich Low_complexity Low_complexity 1 52 0 1887 157 0 7 chr6 165116419 165116719 -17298523 - AluJb SINE Alu -14 298 1 1211 202 19 9 chr6 165116805 165117018 -17298224 - MER58A DNA MER1_type -8 216 2 634 289 103 38 chr6 165117803 165118170 -17297072 + MLT1K LTR MaLR 198 588 0 399 202 0 0 chr6 165118564 165118653 -17296589 + (CA)n Simple_repeat Simple_repeat 2 90 0 279 295 0 25 chr6 165119219 165119316 -17295926 - MIR SINE MIR -56 152 60 194 241 0 69 chr6 165119467 165119525 -17295717 - L3 LINE CR1 -1 1576 1523 2129 149 74 0 chr6 165119723 165120086 -17295156 + MLT1B LTR MaLR 1 390 0 207 0 0 0 chr6 165121178 165121201 -17294041 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 369 0 0 0 chr6 165121200 165121241 -17294001 + (GA)n Simple_repeat Simple_repeat 2 42 0 550 254 119 21 chr6 165121246 165121439 -17293803 + MIR SINE MIR 46 257 -5 414 285 38 66 chr6 165121604 165121785 -17293457 + L2 LINE L2 2778 2989 -324 2174 98 6 31 chr6 165121785 165122103 -17293139 - AluSx SINE Alu -2 310 1 414 285 38 66 chr6 165122103 165122182 -17293060 + L2 LINE L2 2989 3069 -244 848 167 97 5 chr6 165122182 165122368 -17292874 - MER20B DNA MER1_type 0 219 17 182 336 96 16 chr6 165122379 165122504 -17292738 + L2 LINE L2 3080 3214 -58 997 124 0 0 chr6 165122629 165122766 -17292476 + FRAM SINE Alu 12 148 -28 650 307 71 4 chr6 165123101 165123339 -17291903 - MIR SINE MIR -3 259 6 2327 100 0 3 chr6 165123511 165123810 -17291432 - AluSc SINE Alu -11 298 1 24 32 0 0 chr6 165124051 165124082 -17291160 + AT_rich Low_complexity Low_complexity 1 31 0 2385 74 0 0 chr6 165125708 165125993 -17289249 - AluY SINE Alu -10 301 17 236 152 0 0 chr6 165125993 165126026 -17289216 - AluY SINE Alu -268 33 1 1019 203 35 0 chr6 165126087 165126289 -17288953 + MER3 DNA MER1_type 1 209 0 278 239 31 76 chr6 165127452 165127587 -17287655 - MIR3 SINE MIR -107 101 1 353 279 103 37 chr6 165178463 165178599 -17236643 + L2 LINE L2 3112 3256 -16 186 354 67 17 chr6 165178602 165178780 -17236462 - L2 LINE L2 -2522 792 606 347 314 35 64 chr6 165178857 165179029 -17236213 + MER5A DNA MER1_type 23 189 0 196 339 16 0 chr6 165179208 165179270 -17235972 - L2 LINE L2 -2923 391 329 12148 126 51 4 chr6 165179500 165181411 -17233831 + Tigger1 DNA MER2_type 1 2001 -417 2801 91 98 7 chr6 165181411 165181818 -17233424 - MLT2A1 LTR ERVL 0 444 1 2349 141 62 10 chr6 165181818 165182219 -17233023 + Tigger1 DNA MER2_type 1997 2418 0 2162 99 0 20 chr6 165184469 165184761 -17230481 + AluSq SINE Alu 1 286 -27 2150 129 0 0 chr6 165187114 165187400 -17227842 + AluSx SINE Alu 3 288 -24 1282 199 193 84 chr6 165190956 165191418 -17223824 + MLT1E2 LTR MaLR 1 515 -111 1136 152 156 42 chr6 165191518 165191755 -17223487 + AluJb SINE Alu 30 293 -19 943 146 6 41 chr6 165192044 165192215 -17223027 - AluSg/x SINE Alu -18 294 130 217 333 94 0 chr6 165193352 165193448 -17221794 - MIR3 SINE MIR -23 185 81 195 170 0 0 chr6 165196020 165196067 -17219175 + GA-rich Low_complexity Low_complexity 1 47 0 1342 183 11 33 chr6 165197138 165197412 -17217830 - MLT1A1 LTR MaLR -97 268 1 2118 120 0 7 chr6 165197428 165197720 -17217522 + AluSq SINE Alu 1 290 -23 218 303 81 0 chr6 165197794 165197893 -17217349 + MIR SINE MIR 132 238 -24 212 188 21 21 chr6 165197915 165197963 -17217279 + L2 LINE L2 3180 3227 -86 2393 130 37 7 chr6 165198471 165198968 -17216274 + L1MA4 LINE L1 5588 6142 -158 6862 128 65 24 chr6 165199330 165199775 -17215467 + L1PBa LINE L1 1583 2008 -4855 2094 131 7 0 chr6 165199775 165200081 -17215161 + AluSx SINE Alu 3 310 -2 6862 128 65 24 chr6 165200081 165200905 -17214337 + L1PBa LINE L1 2008 2904 -3959 12315 188 14 13 chr6 165201167 165203722 -17211520 + L1 LINE L1 2881 5438 -1424 1015 172 6 0 chr6 165203835 165204015 -17211227 + AluSg/x SINE Alu 127 307 -3 263 309 85 0 chr6 165207061 165207155 -17208087 + MIR3 SINE MIR 94 195 -13 2013 262 104 56 chr6 165208901 165209602 -17205640 - L2 LINE L2 -838 2476 1715 2230 113 0 7 chr6 165209602 165209912 -17205330 + AluSg SINE Alu 1 308 -2 2013 262 104 56 chr6 165209912 165210167 -17205075 - L2 LINE L2 -1599 1715 1474 2372 98 0 13 chr6 165210181 165210496 -17204746 - AluSx SINE Alu -1 311 1 616 149 0 0 chr6 165210498 165210592 -17204650 - AluSq/x SINE Alu -180 132 39 224 260 0 0 chr6 165212080 165212130 -17203112 - L2 LINE L2 0 3313 3264 25 31 0 0 chr6 165212200 165212232 -17203010 + AT_rich Low_complexity Low_complexity 1 32 0 13359 68 34 0 chr6 165213580 165215270 -17199972 - HERVL-A2 LTR ERVL -3906 1748 1 3158 85 69 28 chr6 165215270 165215705 -17199537 - MLT2A2 LTR ERVL 0 453 1 2015 141 3 0 chr6 165215998 165216296 -17198946 + AluSx SINE Alu 1 299 -13 944 178 67 63 chr6 165217060 165217329 -17197913 - L1MC5 LINE L1 -999 6962 6693 346 238 61 40 chr6 165217763 165217872 -17197370 + MIR3 SINE MIR 95 205 -3 284 312 18 0 chr6 165218046 165218155 -17197087 - L2 LINE L2 -3 3310 3200 1035 146 13 0 chr6 165218711 165218869 -17196373 + AluSg/x SINE Alu 137 296 -16 516 257 76 41 chr6 165220686 165220857 -17194385 + MLT1J LTR MaLR 1 177 -334 186 139 0 0 chr6 165223975 165224011 -17191231 - L2 LINE L2 -4 3309 3274 2198 109 0 10 chr6 165226159 165226453 -17188789 + AluSc SINE Alu 3 293 -16 264 259 51 120 chr6 165226663 165226746 -17188496 + MIR3 SINE MIR 16 84 -124 1948 158 0 0 chr6 165226746 165227037 -17188205 - AluSx SINE Alu -21 291 1 264 259 51 120 chr6 165227037 165227111 -17188131 + MIR3 SINE MIR 84 162 -46 455 73 15 0 chr6 165229179 165229247 -17185995 + (TA)n Simple_repeat Simple_repeat 2 70 0 3900 208 58 30 chr6 165229251 165230257 -17184985 - L1MC3 LINE L1 -18 7767 6734 486 0 0 0 chr6 165230942 165230996 -17184246 + (CA)n Simple_repeat Simple_repeat 2 55 0 3672 130 5 3 chr6 165231338 165231914 -17183328 + L1P LINE L1 3 579 -5567 1289 238 32 13 chr6 165232471 165232782 -17182460 + L1MCa LINE L1 19 335 -6091 906 157 0 0 chr6 165232782 165232916 -17182326 + AluJb SINE Alu 1 134 -178 5797 135 56 69 chr6 165232917 165234082 -17181160 + L1MCa LINE L1 329 1478 -4948 654 179 0 18 chr6 165234084 165234196 -17181046 + FRAM SINE Alu 62 171 -5 811 137 0 14 chr6 165234197 165234336 -17180906 + L1MCa LINE L1 1467 1603 -4823 901 157 0 22 chr6 165234336 165234470 -17180772 + FLAM_A SINE Alu 1 131 -2 1096 283 21 0 chr6 165234472 165234804 -17180438 + L1M4 LINE L1 3284 3622 -2524 461 79 26 13 chr6 165234804 165234880 -17180362 - AluSc SINE Alu -9 300 224 14008 92 239 1 chr6 165234987 165237289 -17177953 - L1P LINE L1 -1308 4838 1990 5976 121 65 5 chr6 165239501 165240457 -17174785 - Tigger1 DNA MER2_type 0 2418 1406 283 311 41 0 chr6 165240578 165240700 -17174542 - L1M4 LINE L1 -3049 3097 2971 193 75 50 0 chr6 165240896 165240936 -17174306 + T-rich Low_complexity Low_complexity 2 43 0 1970 85 48 29 chr6 165241224 165241496 -17173746 + AluSx SINE Alu 23 299 -13 1738 93 4 4 chr6 165241971 165242196 -17173046 - AluSq SINE Alu -88 225 1 929 152 87 0 chr6 165243285 165243469 -17171773 - L1MC/D LINE L1 -744 5589 5390 1178 108 0 0 chr6 165243469 165243626 -17171616 - AluSg/x SINE Alu -19 291 135 6514 208 35 49 chr6 165243628 165244511 -17170731 - L1MC/D LINE L1 -750 5396 4551 2018 150 10 3 chr6 165244511 165244818 -17170424 - AluJb SINE Alu -3 309 1 6514 208 35 49 chr6 165244818 165245744 -17169498 - L1MC/D LINE L1 -1595 4551 3613 1276 97 0 0 chr6 165245746 165245901 -17169341 + AluSc SINE Alu 1 155 -154 1229 188 0 5 chr6 165246326 165246550 -17168692 - AluSq SINE Alu -88 225 3 628 299 110 4 chr6 165247455 165247709 -17167533 - MLT1J2 LTR MaLR -147 303 23 994 218 57 24 chr6 165247961 165248209 -17167033 + MIR SINE MIR 5 260 -2 242 306 16 0 chr6 165248801 165248863 -17166379 + L2 LINE L2 3234 3296 -17 2262 143 43 6 chr6 165249354 165249705 -17165537 - THE1B LTR MaLR 0 364 1 2242 115 3 0 chr6 165249986 165250291 -17164951 + AluSx SINE Alu 1 306 -6 1550 85 107 78 chr6 165250525 165250795 -17164447 - AluY SINE Alu -13 298 21 629 252 0 0 chr6 165250904 165251027 -17164215 - MER2 DNA MER2_type -206 139 17 456 307 7 20 chr6 165251029 165251179 -17164063 - MIR SINE MIR -104 158 11 1847 139 0 20 chr6 165252513 165252816 -17162426 - AluJo SINE Alu -15 297 1 180 125 0 0 chr6 165253410 165253442 -17161800 + (CCA)n Simple_repeat Simple_repeat 2 33 0 2063 126 0 0 chr6 165254292 165254586 -17160656 - AluSx SINE Alu -18 294 1 310 228 275 36 chr6 165255444 165255808 -17159434 - L2 LINE L2 -50 3263 2813 1158 103 0 0 chr6 165256084 165256239 -17159003 - AluSg/x SINE Alu -73 239 85 186 103 0 0 chr6 165256248 165256277 -17158965 + (T)n Simple_repeat Simple_repeat 1 29 0 212 292 67 42 chr6 165256406 165256526 -17158716 + L2 LINE L2 1494 1616 -1698 27 29 0 0 chr6 165256876 165256910 -17158332 + AT_rich Low_complexity Low_complexity 1 34 0 265 261 96 17 chr6 165257043 165257158 -17158084 + L2 LINE L2 1802 1925 -1389 27382 30 3 1 chr6 165257275 165260551 -17154691 + L1P LINE L1 2025 5307 -839 2082 127 7 0 chr6 165260656 165260964 -17154278 - AluSx SINE Alu -2 310 1 1792 110 0 4 chr6 165260966 165261221 -17154021 - AluSx SINE Alu -18 294 41 900 74 0 0 chr6 165261241 165261362 -17153880 + (GGGGA)n Simple_repeat Simple_repeat 1 121 0 874 170 18 147 chr6 165261367 165261387 -17153855 - MER33 DNA MER1_type -2283 341 320 1505 144 72 4 chr6 165261387 165261665 -17153577 - AluSx SINE Alu -15 297 1 874 170 18 147 chr6 165261665 165261771 -17153471 - MER33 DNA MER1_type -2304 320 202 997 135 19 6 chr6 165261771 165261927 -17153315 - FRAM SINE Alu -8 158 1 874 170 18 147 chr6 165261927 165262128 -17153114 - MER33 DNA MER1_type -2422 202 18 2306 82 3 0 chr6 165262216 165262519 -17152723 + AluY SINE Alu 1 304 -7 2110 117 3 7 chr6 165263095 165263402 -17151840 - AluSx SINE Alu -6 306 1 758 304 109 6 chr6 165263700 165264012 -17151230 - L1MC/D LINE L1 -2012 5796 5453 2219 108 0 6 chr6 165264050 165264364 -17150878 - AluSx SINE Alu 0 312 1 548 328 75 29 chr6 165264435 165264847 -17150395 + L2 LINE L2 2067 2497 -817 324 0 0 0 chr6 165266065 165266101 -17149141 + (TG)n Simple_repeat Simple_repeat 2 37 0 200 320 0 0 chr6 165266535 165266585 -17148657 + L2 LINE L2 3210 3259 -13 240 216 191 26 chr6 165266990 165267107 -17148135 + MIR3 SINE MIR 72 208 0 2178 94 0 13 chr6 165267172 165267481 -17147761 + AluSx SINE Alu 5 309 -3 1478 91 5 0 chr6 165268960 165269158 -17146084 - AluSp SINE Alu -16 297 99 584 28 0 0 chr6 165269162 165269234 -17146008 + AluS SINE Alu 30 101 -212 2230 74 17 0 chr6 165269268 165269567 -17145675 + AluSp SINE Alu 1 304 -9 1683 151 60 0 chr6 165269883 165270167 -17145075 + AluSx SINE Alu 1 301 -11 214 264 0 0 chr6 165270173 165270226 -17145016 - MIR3 SINE MIR -5 203 151 693 200 26 92 chr6 165270519 165270617 -17144625 + MER5A DNA MER1_type 8 88 -101 1915 158 0 0 chr6 165270617 165270927 -17144315 + AluSx SINE Alu 1 310 -2 693 200 26 92 chr6 165270927 165271023 -17144219 + MER5A DNA MER1_type 88 189 0 357 100 0 0 chr6 165271357 165271407 -17143835 + MER66B LTR ERV1 295 344 -142 21 0 0 0 chr6 165271408 165271429 -17143813 + AT_rich Low_complexity Low_complexity 1 21 0 924 66 0 0 chr6 165272525 165272646 -17142596 + AluY SINE Alu 191 311 0 370 111 0 0 chr6 165272974 165273028 -17142214 + AluJo SINE Alu 82 135 -167 2058 102 3 7 chr6 165273028 165273311 -17141931 + AluSq SINE Alu 1 282 -31 1911 107 9 50 chr6 165273311 165273629 -17141613 - AluSg SINE Alu -1 309 4 200 318 220 8 chr6 165273702 165273834 -17141408 + L2 LINE L2 3095 3254 -18 2162 103 20 0 chr6 165274069 165274370 -17140872 + AluSq SINE Alu 1 307 -6 2200 119 0 0 chr6 165274380 165274691 -17140551 + AluSx SINE Alu 2 312 0 2131 99 0 13 chr6 165275325 165275629 -17139613 + AluY SINE Alu 1 300 -11 929 106 8 0 chr6 165275843 165275975 -17139267 + AluSq/x SINE Alu 1 133 -179 1030 115 0 7 chr6 165276081 165276229 -17139013 - AluSq SINE Alu -75 238 92 1092 142 0 0 chr6 165276524 165276686 -17138556 - AluSg/x SINE Alu -15 297 136 1803 131 3 44 chr6 165277025 165277345 -17137897 + AluSq SINE Alu 1 308 0 327 288 12 104 chr6 165277531 165277594 -17137648 - MIR SINE MIR -3 259 192 1828 161 0 7 chr6 165277594 165277892 -17137350 - AluJb SINE Alu -16 296 1 327 288 12 104 chr6 165277892 165277991 -17137251 - MIR SINE MIR -70 192 112 21 36 0 0 chr6 165278013 165278041 -17137201 + AT_rich Low_complexity Low_complexity 1 28 0 264 270 101 11 chr6 165278651 165278740 -17136502 + MIR SINE MIR 2 98 -164 199 293 104 82 chr6 165278757 165279012 -17136230 + L2 LINE L2 2417 2682 -632 1986 130 3 0 chr6 165279012 165279304 -17135938 - AluSx SINE Alu -7 305 13 199 293 104 82 chr6 165279304 165279365 -17135877 + L2 LINE L2 2682 2740 -574 2223 74 20 0 chr6 165279470 165279766 -17135476 - AluSp SINE Alu -11 302 1 215 296 216 11 chr6 165279975 165280042 -17135200 - MIR SINE MIR -50 212 160 2212 85 0 20 chr6 165280042 165280348 -17134894 + AluSg SINE Alu 1 300 -10 215 296 216 11 chr6 165280348 165280456 -17134786 - MIR SINE MIR -102 160 1 22 35 0 0 chr6 165280480 165280509 -17134733 + AT_rich Low_complexity Low_complexity 1 29 0 2152 75 21 0 chr6 165280512 165280793 -17134449 + AluSx SINE Alu 1 287 -25 216 0 0 0 chr6 165280793 165280817 -17134425 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 279 319 0 0 chr6 165281006 165281075 -17134167 - L2 LINE L2 0 3313 3245 524 283 68 23 chr6 165281175 165281352 -17133890 + MIR3 SINE MIR 24 208 0 1840 149 10 0 chr6 165282081 165282389 -17132853 + AluJb SINE Alu 1 311 -1 521 303 73 0 chr6 165282492 165282670 -17132572 - MER91A DNA MER1_type -1 195 5 234 263 122 78 chr6 165282724 165282979 -17132263 - L2 LINE L2 -190 3082 2817 27 0 0 0 chr6 165284428 165284455 -17130787 + GC_rich Low_complexity Low_complexity 1 27 0 187 51 0 51 chr6 165284754 165284793 -17130449 + (CCCCG)n Simple_repeat Simple_repeat 2 38 0 2295 63 3 3 chr6 165285161 165285462 -17129780 - AluSp SINE Alu -12 301 1 658 279 74 23 chr6 165285632 165286023 -17129219 - LTR16B LTR ERVL 0 464 54 1778 124 28 0 chr6 165286410 165286692 -17128550 - AluSx SINE Alu -22 290 1 233 175 35 0 chr6 165286815 165286872 -17128370 - L1ME4a LINE L1 -3 6118 6060 1347 224 71 78 chr6 165286961 165287108 -17128134 - LTR41 LTR ERVL -1 772 625 2116 91 44 0 chr6 165287108 165287406 -17127836 + AluSp SINE Alu 1 311 -2 1347 224 71 78 chr6 165287406 165287893 -17127349 - LTR41 LTR ERVL -148 625 68 2083 105 7 0 chr6 165287894 165288180 -17127062 + AluSx SINE Alu 1 288 -24 1354 135 0 0 chr6 165288190 165288428 -17126814 + AluSg/x SINE Alu 84 321 0 28 0 0 26 chr6 165288962 165288982 -17126260 + AT_rich Low_complexity Low_complexity 1 21 -17 2229 95 0 3 chr6 165288982 165289276 -17125966 + AluSg SINE Alu 1 293 -17 28 0 0 26 chr6 165289276 165289294 -17125948 + AT_rich Low_complexity Low_complexity 21 38 0 247 309 45 73 chr6 165289371 165289481 -17125761 + L2 LINE L2 3158 3264 -8 2081 111 0 3 chr6 165289803 165290100 -17125142 - AluSq SINE Alu -17 296 1 1445 63 0 5 chr6 165291097 165291286 -17123956 + L1PA5 LINE L1 5960 6147 -7 2729 128 27 10 chr6 165291400 165291813 -17123429 + MSTA LTR MaLR 1 420 -8 2402 60 3 0 chr6 165291915 165292217 -17123025 + AluSp SINE Alu 1 303 -10 2188 94 7 13 chr6 165292501 165292809 -17122433 - AluSg SINE Alu -4 306 1 2303 92 0 0 chr6 165293487 165293791 -17121451 - AluSx SINE Alu -8 304 1 2199 107 3 0 chr6 165294179 165294487 -17120755 + AluSp SINE Alu 5 313 0 2090 102 3 25 chr6 165294871 165295186 -17120056 - AluSg SINE Alu -2 308 1 2238 105 0 6 chr6 165295223 165295532 -17119710 + AluSx SINE Alu 1 308 0 243 0 0 0 chr6 165295532 165295559 -17119683 + (TA)n Simple_repeat Simple_repeat 2 28 0 908 167 6 6 chr6 165295572 165295734 -17119508 + FRAM SINE Alu 1 161 -15 382 207 9 9 chr6 165295946 165296057 -17119185 - L1MA4 LINE L1 -4 6296 6186 2012 82 0 0 chr6 165296061 165296317 -17118925 - AluY SINE Alu 0 311 56 586 235 2 4 chr6 165296319 165296468 -17118774 - L1MA4 LINE L1 -157 6143 5987 516 234 47 0 chr6 165296468 165296596 -17118646 + MIR SINE MIR 75 208 -54 2055 129 0 0 chr6 165296654 165296956 -17118286 + AluSq SINE Alu 1 302 -11 621 151 143 25 chr6 165297004 165297123 -17118119 - FLAM_C SINE Alu -9 134 2 2315 85 0 22 chr6 165297142 165297458 -17117784 - AluSc SINE Alu 0 309 1 1139 152 0 182 chr6 165297462 165297825 -17117417 - AluJo SINE Alu -2 300 4 481 307 12 18 chr6 165297957 165298120 -17117122 - MIR SINE MIR 0 262 101 1095 228 40 18 chr6 165299059 165299331 -17115911 - MLT1C LTR MaLR 0 467 190 1671 155 0 0 chr6 165299338 165299640 -17115602 - AluJo SINE Alu 0 318 17 587 225 0 8 chr6 165299814 165299934 -17115308 - MLT1B LTR MaLR 0 467 349 922 176 18 0 chr6 165299936 165300101 -17115141 - MLT1B LTR MaLR -215 175 8 1509 111 0 14 chr6 165300173 165300389 -17114853 - AluSg/x SINE Alu -19 291 79 2045 122 0 16 chr6 165300505 165300809 -17114433 + AluSx SINE Alu 1 299 -13 2441 69 0 0 chr6 165300809 165301115 -17114127 + AluY SINE Alu 1 306 -5 2086 121 0 0 chr6 165301124 165301421 -17113821 + AluSx SINE Alu 1 297 -15 1123 137 0 0 chr6 165301423 165301591 -17113651 + AluSg/x SINE Alu 135 302 -10 2153 124 0 0 chr6 165302338 165302637 -17112605 + AluSx SINE Alu 1 299 -13 330 280 89 12 chr6 165302833 165303001 -17112241 + L1ME LINE L1 5254 5434 -732 723 185 15 15 chr6 165303001 165303136 -17112106 + AluJo SINE Alu 2 136 -176 269 244 37 0 chr6 165303138 165303220 -17112022 + L1ME LINE L1 5423 5507 -655 1078 88 0 0 chr6 165303220 165303357 -17111885 + AluSq/x SINE Alu 1 137 -175 1277 234 82 3 chr6 165303366 165303425 -17111817 - L1ME3A LINE L1 -262 5908 5850 425 272 106 54 chr6 165303425 165303744 -17111498 - L1MB1 LINE L1 -357 5832 5494 2187 102 0 0 chr6 165303744 165304047 -17111195 - AluY SINE Alu -8 303 1 304 277 76 8 chr6 165304047 165304166 -17111076 + L1ME3A LINE L1 6043 6169 -1 1519 138 24 28 chr6 165304199 165304446 -17110796 - AluJb SINE Alu -66 246 1 351 0 0 0 chr6 165304730 165304769 -17110473 + (CA)n Simple_repeat Simple_repeat 2 40 0 1737 114 35 24 chr6 165305021 165305373 -17109869 - AluSq SINE Alu 0 313 1 579 312 69 23 chr6 165305729 165305947 -17109295 - MIR SINE MIR -13 249 22 231 36 0 0 chr6 165306371 165306399 -17108843 + (TCCCC)n Simple_repeat Simple_repeat 1 28 0 2030 96 0 0 chr6 165306399 165306671 -17108571 - AluSx SINE Alu -17 295 24 746 188 8 0 chr6 165306678 165306806 -17108436 - FLAM_A SINE Alu -4 129 1 248 324 162 0 chr6 165307460 165307565 -17107677 - L2 LINE L2 0 3272 3151 2039 112 3 0 chr6 165307877 165308163 -17107079 + AluSq SINE Alu 1 287 -26 577 264 57 68 chr6 165308548 165308725 -17106517 + MIR SINE MIR 1 176 -86 1483 145 6 88 chr6 165308725 165308848 -17106394 + AluJo SINE Alu 1 132 -180 2077 103 0 3 chr6 165308848 165309174 -17106068 - AluSx SINE Alu 0 327 3 1483 145 6 88 chr6 165309174 165309380 -17105862 + AluJo SINE Alu 132 304 -8 577 264 57 68 chr6 165309380 165309467 -17105775 + MIR SINE MIR 176 262 0 1109 125 0 0 chr6 165310383 165310543 -17104699 + AluSg/x SINE Alu 136 295 -17 322 306 9 36 chr6 165310782 165310893 -17104349 + MIR3 SINE MIR 76 183 -25 2326 72 0 0 chr6 165310913 165311205 -17104037 + AluSq SINE Alu 1 292 -21 233 53 53 0 chr6 165311504 165311542 -17103700 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1878 114 7 0 chr6 165311553 165311824 -17103418 - AluSx SINE Alu -39 273 1 192 354 133 0 chr6 165311840 165311953 -17103289 - L2 LINE L2 0 3313 3186 734 192 0 0 chr6 165312124 165312244 -17102998 + AluJo/FLAM SINE Alu 2 121 -191 2105 105 0 10 chr6 165312244 165312539 -17102703 - AluSx SINE Alu -20 292 1 42 0 0 62 chr6 165312550 165312586 -17102656 + AT_rich Low_complexity Low_complexity 1 33 -28 8762 32 0 244 chr6 165312586 165314420 -17100822 + SVA Other Other 1 1386 0 42 0 0 62 chr6 165314420 165314448 -17100794 + AT_rich Low_complexity Low_complexity 33 61 0 2274 93 7 0 chr6 165314902 165315202 -17100040 - AluSx SINE Alu -10 302 1 1076 152 0 6 chr6 165315213 165315391 -17099851 + AluSg/x SINE Alu 118 294 -16 352 275 100 17 chr6 165315393 165315513 -17099729 - MER5A DNA MER1_type -56 133 4 1779 120 40 0 chr6 165315822 165316117 -17099125 + AluSx SINE Alu 1 306 0 1644 98 0 0 chr6 165316122 165316347 -17098895 + AluY SINE Alu 1 225 -86 245 259 35 24 chr6 165316349 165316434 -17098808 + L2 LINE L2 3224 3309 -4 2197 95 0 7 chr6 165317256 165317327 -17097915 - AluSg SINE Alu 0 351 281 219 36 0 0 chr6 165317327 165317355 -17097887 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2197 95 0 7 chr6 165317355 165317636 -17097606 - AluSg SINE Alu -70 281 1 2262 104 0 0 chr6 165318178 165318486 -17096756 + AluSq SINE Alu 1 308 -5 2094 119 3 0 chr6 165319948 165320250 -17094992 + AluSx SINE Alu 1 303 -9 515 150 0 0 chr6 165320310 165320390 -17094852 + MADE1 DNA Mariner 1 80 0 2059 111 21 0 chr6 165320427 165320553 -17094689 + AluSx SINE Alu 1 123 -189 189 0 0 0 chr6 165320553 165320574 -17094668 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2059 111 21 0 chr6 165320574 165320736 -17094506 + AluSx SINE Alu 123 295 -17 1985 102 0 4 chr6 165321665 165321939 -17093303 + AluSg SINE Alu 1 273 -37 180 0 0 0 chr6 165321944 165321964 -17093278 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1846 179 0 0 chr6 165322512 165322824 -17092418 - AluJb SINE Alu 0 312 1 199 228 236 16 chr6 165322957 165323084 -17092158 - L3 LINE CR1 -1 1576 1422 1622 123 0 4 chr6 165323442 165323685 -17091557 + AluSq SINE Alu 1 242 -71 1524 156 123 4 chr6 165323898 165324167 -17091075 + AluJo SINE Alu 2 302 0 2023 134 3 0 chr6 165324251 165324558 -17090684 + AluSp SINE Alu 1 308 -5 1809 153 3 16 chr6 165324605 165324912 -17090330 - AluJb SINE Alu -8 304 2 629 216 0 8 chr6 165325840 165325965 -17089277 - FLAM_C SINE Alu -11 132 9 1732 153 3 7 chr6 165325996 165326296 -17088946 - AluJo SINE Alu -9 303 5 2077 102 54 0 chr6 165326420 165326714 -17088528 + AluSx SINE Alu 1 310 -2 195 311 106 15 chr6 165327102 165327234 -17088008 - L2 LINE L2 -455 2859 2716 2046 99 37 3 chr6 165327234 165327528 -17087714 + AluSg SINE Alu 5 308 -2 240 269 194 41 chr6 165327626 165327894 -17087348 - L2 LINE L2 -780 2534 2226 12184 155 36 37 chr6 165329283 165331120 -17084122 + L1M1 LINE L1 23 1861 -5704 2170 113 3 0 chr6 165331120 165331429 -17083813 + AluSx SINE Alu 1 310 -2 12184 155 36 37 chr6 165331429 165331447 -17083795 + L1M1 LINE L1 1861 1878 -5687 2243 97 7 0 chr6 165331447 165331757 -17083485 + AluSp SINE Alu 1 312 -1 12184 155 36 37 chr6 165331757 165332098 -17083144 + L1M1 LINE L1 1878 2218 -5347 2123 121 0 3 chr6 165332098 165332403 -17082839 - AluSx SINE Alu -8 304 1 12184 155 36 37 chr6 165332403 165332753 -17082489 + L1M1 LINE L1 2218 2567 -4998 2003 121 19 7 chr6 165332753 165333060 -17082182 + AluSx SINE Alu 1 311 -1 12184 155 36 37 chr6 165333060 165333294 -17081948 + L1M1 LINE L1 2567 2800 -4765 1517 168 8 8 chr6 165333294 165333562 -17081680 + AluSx SINE Alu 38 305 -7 12184 155 36 37 chr6 165333562 165333696 -17081546 + L1M1 LINE L1 2800 3600 -3965 240 172 0 0 chr6 165333696 165333754 -17081488 + A-rich Low_complexity Low_complexity 1 58 0 1924 124 39 12 chr6 165333755 165334086 -17081156 + L1MA3 LINE L1 5966 6305 0 374 294 83 0 chr6 165334369 165334478 -17080764 - MIR SINE MIR -95 167 50 211 285 87 47 chr6 165334637 165334809 -17080433 - L2 LINE L2 -223 3049 2871 1851 105 0 99 chr6 165335023 165335366 -17079876 - AluSx SINE Alu -3 309 1 2226 94 3 22 chr6 165336524 165336842 -17078400 - AluSq SINE Alu -1 312 1 355 315 49 14 chr6 165337205 165337348 -17077894 - MIR SINE MIR -13 249 102 * 488 323 32 6 chr6 165337347 165337505 -17077737 - L2 LINE L2 -1 3271 3110 283 288 0 0 chr6 165337558 165337638 -17077604 - MER112 DNA MER1_type 0 260 181 648 120 0 0 chr6 165337642 165337742 -17077500 + (TA)n Simple_repeat Simple_repeat 2 101 0 317 100 0 0 chr6 165337750 165337800 -17077442 - Alu SINE Alu 0 308 259 1109 102 0 0 chr6 165337801 165337948 -17077294 - AluSq/x SINE Alu -164 149 3 384 234 69 91 chr6 165337983 165338158 -17077084 - MER112 DNA MER1_type -84 176 6 2168 80 20 7 chr6 165338662 165338964 -17076278 - AluSg SINE Alu -4 306 1 1926 89 7 7 chr6 165339606 165339877 -17075365 + AluSc SINE Alu 2 272 -37 1551 153 0 8 chr6 165339877 165340131 -17075111 - AluJo SINE Alu -60 252 1 790 109 0 0 chr6 165340277 165340378 -17074864 + FLAM_C SINE Alu 18 118 -25 31 26 0 0 chr6 165340378 165340416 -17074826 + AT_rich Low_complexity Low_complexity 1 38 0 417 292 90 0 chr6 165340588 165340732 -17074510 - MIR SINE MIR -98 164 8 1859 115 14 4 chr6 165340783 165341120 -17074122 + AluSx SINE Alu 1 340 0 2126 99 3 0 chr6 165341124 165341426 -17073816 + AluSp SINE Alu 9 311 -2 1677 148 33 0 chr6 165342612 165342883 -17072359 + AluSx SINE Alu 1 280 -32 1972 112 0 0 chr6 165342893 165343170 -17072072 + AluSx SINE Alu 5 281 -31 329 254 28 0 chr6 165343406 165343477 -17071765 - MER91B DNA MER1_type -117 73 1 1793 146 9 51 chr6 165343760 165344075 -17071167 - AluJb SINE Alu -10 302 1 1877 123 0 3 chr6 165344134 165344442 -17070800 - AluSx SINE Alu 0 307 1 230 159 0 23 chr6 165345608 165345652 -17069590 + CT-rich Low_complexity Low_complexity 3 45 0 286 274 0 71 chr6 165346507 165346591 -17068651 - MIR SINE MIR -79 183 106 1882 122 0 61 chr6 165348709 165349020 -17066222 + AluSx SINE Alu 1 292 -20 1264 221 117 39 chr6 165349852 165349959 -17065283 - L1MEc LINE L1 -3558 2657 2560 1888 168 3 0 chr6 165349959 165350269 -17064973 - AluJo SINE Alu -1 311 1 1264 221 117 39 chr6 165350269 165350745 -17064497 - L1MEc LINE L1 -3655 2560 2078 2148 109 0 3 chr6 165350766 165351069 -17064173 - AluSq SINE Alu -11 302 1 202 154 26 0 chr6 165351665 165351704 -17063538 + A-rich Low_complexity Low_complexity 5 44 0 366 317 30 90 chr6 165351881 165351998 -17063244 + MIR SINE MIR 4 126 -136 1635 125 0 19 chr6 165351998 165352254 -17062988 - AluJb SINE Alu -61 251 1 366 317 30 90 chr6 165352254 165352404 -17062838 + MIR SINE MIR 126 255 -7 1974 131 3 0 chr6 165352441 165352739 -17062503 + AluSg SINE Alu 1 299 -11 21 57 0 0 chr6 165352831 165352866 -17062376 + AT_rich Low_complexity Low_complexity 1 35 0 986 147 52 37 chr6 165353957 165354190 -17061052 + AluJo SINE Alu 1 288 -24 817 52 9 9 chr6 165354191 165354307 -17060935 + (GAGAA)n Simple_repeat Simple_repeat 3 118 0 444 217 54 10 chr6 165354615 165354761 -17060481 + LTR45B LTR ERV1 340 524 -1 351 0 0 0 chr6 165355344 165355383 -17059859 + (TG)n Simple_repeat Simple_repeat 1 39 0 2376 100 0 0 chr6 165355549 165355849 -17059393 - AluSx SINE Alu -12 300 1 215 285 132 41 chr6 165356828 165357070 -17058172 + L2 LINE L2 2396 2659 -655 2275 107 3 3 chr6 165357188 165357496 -17057746 - AluSq SINE Alu -5 308 1 1714 201 0 19 chr6 165357497 165357810 -17057432 - AluJb SINE Alu -5 307 1 1929 141 3 7 chr6 165360114 165360405 -17054837 + AluJo SINE Alu 12 301 -11 490 177 10 21 chr6 165360549 165360645 -17054597 - AluJo SINE Alu -171 141 47 * 728 174 0 0 chr6 165360639 165360754 -17054488 + AluJb SINE Alu 172 286 -26 1983 144 6 13 chr6 165360865 165361178 -17054064 - AluJb SINE Alu -1 311 1 1952 144 3 22 chr6 165361252 165361571 -17053671 + AluSq SINE Alu 1 313 0 426 263 70 70 chr6 165361909 165362066 -17053176 - MIR SINE MIR 0 262 103 1955 133 3 3 chr6 165362066 165362360 -17052882 + AluSx SINE Alu 1 294 -18 426 263 70 70 chr6 165362360 165362445 -17052797 - MIR SINE MIR -158 104 20 2256 92 0 49 chr6 165362576 165362901 -17052341 + AluSq SINE Alu 1 309 -4 331 310 65 35 chr6 165363013 165363242 -17052000 + L2 LINE L2 2986 3221 -92 550 172 115 0 chr6 165363521 165363643 -17051599 + L1MB3 LINE L1 6048 6183 0 218 229 98 0 chr6 165363667 165363728 -17051514 + L2 LINE L2 3209 3275 -38 1515 67 0 0 chr6 165363992 165364185 -17051057 - AluY SINE Alu 0 311 119 207 0 0 0 chr6 165364185 165364208 -17051034 + (T)n Simple_repeat Simple_repeat 1 23 0 1119 53 0 0 chr6 165364208 165364340 -17050902 - AluYb8 SINE Alu -186 132 1 2211 94 3 10 chr6 165364342 165364641 -17050601 - AluSp SINE Alu -14 299 3 196 305 146 0 chr6 165364971 165365053 -17050189 + MIR SINE MIR 47 140 -68 197 188 62 0 chr6 165365197 165365245 -17049997 + MIR3 SINE MIR 158 208 0 211 277 96 21 chr6 165365836 165365930 -17049312 - MIR SINE MIR -109 153 53 693 207 49 6 chr6 165365954 165366118 -17049124 + MER5B DNA MER1_type 1 171 -7 223 329 13 0 chr6 165367890 165367966 -17047276 + L2 LINE L2 3236 3312 -1 2413 103 0 3 chr6 165368323 165368633 -17046609 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr6 165372037 165372058 -17043184 + AT_rich Low_complexity Low_complexity 1 21 0 229 331 123 8 chr6 165372502 165372632 -17042610 + MIR3 SINE MIR 7 151 -57 2284 93 7 10 chr6 165373182 165373483 -17041759 - AluSx SINE Alu -11 301 2 2058 127 38 0 chr6 165374115 165374407 -17040835 - AluSx SINE Alu -9 303 1 378 164 0 15 chr6 165374860 165374927 -17040315 + U8 snRNA snRNA 50 115 -21 208 314 124 0 chr6 165374943 165375048 -17040194 - MIR SINE MIR -71 137 20 749 127 17 0 chr6 165375170 165375288 -17039954 + FLAM_C SINE Alu 12 131 -12 518 277 17 40 chr6 165375842 165375876 -17039366 - MIR SINE MIR -70 192 159 553 44 0 132 chr6 165375876 165375925 -17039317 - MADE1 DNA Mariner 0 80 47 2207 121 3 0 chr6 165375925 165376222 -17039020 + AluSg SINE Alu 1 298 -12 553 44 0 132 chr6 165376222 165376263 -17038979 - MADE1 DNA Mariner -33 47 2 518 277 17 40 chr6 165376263 165376405 -17038837 - MIR SINE MIR -103 159 20 2324 106 0 0 chr6 165376485 165376778 -17038464 - AluSx SINE Alu -17 295 3 951 185 0 0 chr6 165377020 165377182 -17038060 - AluJo/FRAM SINE Alu -17 295 134 1919 101 16 0 chr6 165377182 165377439 -17037803 - AluSx SINE Alu -7 305 45 285 268 108 32 chr6 165378831 165378988 -17036254 + MIR SINE MIR 24 192 -70 31 26 0 0 chr6 165380285 165380323 -17034919 + AT_rich Low_complexity Low_complexity 1 38 0 2075 110 3 33 chr6 165380323 165380622 -17034620 - AluSx SINE Alu -22 290 1 23 54 0 0 chr6 165380716 165380753 -17034489 + AT_rich Low_complexity Low_complexity 1 37 0 2311 93 6 3 chr6 165381575 165381887 -17033355 + AluSp SINE Alu 1 313 0 2281 110 0 7 chr6 165382125 165382433 -17032809 + AluSq SINE Alu 3 308 -5 2410 77 3 3 chr6 165382734 165383031 -17032211 + AluSx SINE Alu 1 297 -15 2176 136 0 7 chr6 165384006 165384308 -17030934 + AluSx SINE Alu 1 300 -12 2083 128 0 0 chr6 165384994 165385300 -17029942 - AluSx SINE Alu 0 307 2 2202 112 3 3 chr6 165385304 165385600 -17029642 - AluSx SINE Alu -16 296 1 645 167 9 0 chr6 165386861 165386975 -17028267 + MER53 DNA DNA 74 188 -1 180 87 109 0 chr6 165387430 165387476 -17027766 + GA-rich Low_complexity Low_complexity 5 55 0 1866 136 0 43 chr6 165388018 165388320 -17026922 + AluSx SINE Alu 1 289 -23 2149 114 13 3 chr6 165388467 165388766 -17026476 + AluSc SINE Alu 1 302 -7 183 322 50 50 chr6 165389087 165389238 -17026004 - L3 LINE CR1 -3 1574 1421 2254 102 20 0 chr6 165389238 165389531 -17025711 - AluSx SINE Alu -13 299 1 183 322 50 50 chr6 165389531 165389578 -17025664 - L3 LINE CR1 -155 1422 1376 193 311 57 91 chr6 165389733 165389942 -17025300 - L3 LINE CR1 -435 1142 941 414 243 22 66 chr6 165390033 165390169 -17025073 - L3 LINE CR1 -837 740 611 476 353 74 23 chr6 165390519 165390950 -17024292 - L3 LINE CR1 -984 593 141 2620 131 33 0 chr6 165391405 165391801 -17023441 + MSTC LTR MaLR 1 409 -19 2020 140 0 0 chr6 165394957 165395249 -17019993 - AluSx SINE Alu -20 292 1 2411 79 0 19 chr6 165395851 165396169 -17019073 - AluSx SINE Alu 0 312 1 1031 163 0 0 chr6 165397284 165397444 -17017798 - FRAM SINE Alu -6 160 1 316 346 33 33 chr6 165397785 165397996 -17017246 - MIR SINE MIR -1 261 51 2373 92 0 7 chr6 165398043 165398347 -17016895 - AluSx SINE Alu -10 302 1 2282 108 0 7 chr6 165398353 165398650 -17016592 - AluSg SINE Alu -15 295 1 456 65 0 16 chr6 165398651 165398713 -17016529 + MADE1 DNA Mariner 18 78 -2 1389 138 154 8 chr6 165399228 165399488 -17015754 + AluSx SINE Alu 1 298 -4 29 0 0 25 chr6 165399488 165399516 -17015726 + AT_rich Low_complexity Low_complexity 1 29 -10 2215 119 3 25 chr6 165399516 165399835 -17015407 + AluSx SINE Alu 1 312 0 29 0 0 25 chr6 165399835 165399846 -17015396 + AT_rich Low_complexity Low_complexity 29 39 0 299 290 40 0 chr6 165400654 165400754 -17014488 + L2 LINE L2 3201 3304 -9 336 77 96 0 chr6 165401557 165401609 -17013633 + L1PA16 LINE L1 6101 6157 -9 653 211 0 8 chr6 165401926 165402049 -17013193 - FLAM_C SINE Alu -20 123 2 272 188 31 16 chr6 165402185 165402249 -17012993 - L2 LINE L2 -5 3267 3203 21 0 0 0 chr6 165402514 165402535 -17012707 + AT_rich Low_complexity Low_complexity 1 21 0 181 132 53 26 chr6 165403662 165403700 -17011542 - MIR SINE MIR -187 75 37 403 273 200 10 chr6 165403812 165404017 -17011225 + MIR SINE MIR 17 260 -2 549 168 0 10 chr6 165404246 165404385 -17010857 - MER53 DNA DNA 0 189 1 2048 157 0 0 chr6 165405455 165405760 -17009482 - AluSx SINE Alu -7 305 1 1012 120 0 0 chr6 165405760 165405893 -17009349 - AluSq/x SINE Alu -177 135 3 1735 178 7 10 chr6 165405946 165406238 -17009004 - AluJo SINE Alu -21 291 1 265 339 163 26 chr6 165406532 165406759 -17008483 - MIR SINE MIR 0 262 5 2082 132 0 0 chr6 165407722 165408026 -17007216 + AluSx SINE Alu 1 304 -8 2089 107 3 7 chr6 165408239 165408537 -17006705 - AluSx SINE Alu -15 297 1 2186 102 17 0 chr6 165408927 165409220 -17006022 + AluSx SINE Alu 1 298 -14 1769 118 22 60 chr6 165409730 165410045 -17005197 + AluSx SINE Alu 1 303 -9 846 254 54 13 chr6 165410598 165410822 -17004420 - MIR SINE MIR -17 245 13 280 278 196 15 chr6 165412844 165412977 -17002265 - L2 LINE L2 0 3272 3116 2280 93 0 0 chr6 165412997 165413288 -17001954 - AluSx SINE Alu -21 291 1 1434 195 0 11 chr6 165413550 165413811 -17001431 + AluJo SINE Alu 1 258 -54 2171 122 3 0 chr6 165414151 165414447 -17000795 + AluSq SINE Alu 1 297 -16 2257 94 0 38 chr6 165414681 165415000 -17000242 + AluSq SINE Alu 1 307 -6 259 197 16 0 chr6 165415001 165415062 -17000180 + L1ME LINE L1 5764 5825 -296 387 0 0 0 chr6 165416450 165416493 -16998749 + (TG)n Simple_repeat Simple_repeat 1 43 0 2096 76 54 0 chr6 165417287 165417563 -16997679 - AluSp SINE Alu -20 293 3 534 316 21 11 chr6 165418986 165419173 -16996069 - MER5A DNA MER1_type 0 189 1 1927 88 0 4 chr6 165419575 165419826 -16995416 + AluSq SINE Alu 1 250 -63 197 307 40 27 chr6 165420610 165420685 -16994557 - L2 LINE L2 -4 3309 3234 22 0 0 0 chr6 165421203 165421225 -16994017 + AT_rich Low_complexity Low_complexity 1 22 0 2271 112 0 3 chr6 165421511 165421825 -16993417 - AluSq SINE Alu 0 313 1 1648 110 5 0 chr6 165421914 165422133 -16993109 + AluSg/x SINE Alu 79 298 -14 353 264 19 77 chr6 165422133 165422189 -16993053 - MIR SINE MIR -24 238 180 1576 178 14 44 chr6 165422189 165422469 -16992773 - L1MB7 LINE L1 -17 6167 5880 469 71 12 12 chr6 165422469 165422553 -16992689 + (TG)n Simple_repeat Simple_repeat 1 84 0 2065 103 4 11 chr6 165422553 165422834 -16992408 - AluSx SINE Alu -33 279 1 1576 178 14 44 chr6 165422834 165422918 -16992324 - L1MB7 LINE L1 -302 5882 5813 353 264 19 77 chr6 165422918 165423016 -16992226 - MIR SINE MIR -82 180 93 29 0 0 0 chr6 165424153 165424182 -16991060 + AT_rich Low_complexity Low_complexity 1 29 0 800 192 137 0 chr6 165424262 165424444 -16990798 + MER3 DNA MER1_type 2 208 -1 28 0 0 0 chr6 165424651 165424679 -16990563 + AT_rich Low_complexity Low_complexity 1 28 0 402 254 94 7 chr6 165424755 165424893 -16990349 - MIR SINE MIR -9 253 104 228 285 13 152 chr6 165425027 165425178 -16990064 + L2 LINE L2 3143 3272 0 385 303 189 0 chr6 165426152 165426284 -16988958 - MER5A DNA MER1_type -11 178 22 1486 131 127 22 chr6 165426363 165426630 -16988612 + AluSx SINE Alu 1 295 -17 1515 154 0 49 chr6 165426630 165426895 -16988347 - AluJo SINE Alu -31 281 29 208 265 0 0 chr6 165426934 165426983 -16988259 - L2 LINE L2 0 3313 3265 387 273 70 23 chr6 165427362 165427490 -16987752 - MIR SINE MIR -36 226 93 2209 89 11 0 chr6 165427657 165427937 -16987305 + AluSq SINE Alu 1 283 -30 184 358 193 16 chr6 165427949 165428203 -16987039 - L2 LINE L2 -723 2591 2293 474 291 147 45 chr6 165428331 165428705 -16986537 - L2 LINE L2 -1273 2041 1618 2402 69 7 7 chr6 165428705 165429011 -16986231 + AluSp SINE Alu 1 306 -7 474 291 147 45 chr6 165429011 165429059 -16986183 - L2 LINE L2 -1696 1618 1576 846 189 31 66 chr6 165429111 165429338 -16985904 - MER20 DNA MER1_type 0 219 1 926 139 0 0 chr6 165430322 165430451 -16984791 + FRAM SINE Alu 6 134 -42 1793 180 0 10 chr6 165431483 165431788 -16983454 - AluJo SINE Alu -8 304 3 1969 153 0 10 chr6 165434003 165434297 -16980945 - AluJb SINE Alu -19 293 3 2336 117 0 0 chr6 165435369 165435678 -16979564 + AluSx SINE Alu 1 309 -3 2191 123 7 0 chr6 165437346 165437648 -16977594 + AluSg SINE Alu 1 304 -6 1703 205 41 62 chr6 165438396 165438860 -16976382 + MLT1C LTR MaLR 11 464 -3 271 256 139 36 chr6 165438919 165439056 -16976186 + MIR SINE MIR 34 184 -78 22 0 0 0 chr6 165440055 165440077 -16975165 + AT_rich Low_complexity Low_complexity 1 22 0 828 136 0 109 chr6 165440212 165440396 -16974846 + FRAM SINE Alu 1 164 -2 371 312 78 0 chr6 165440670 165440824 -16974418 + MIR SINE MIR 97 262 0 258 307 68 11 chr6 165440878 165440966 -16974276 - MIR SINE MIR -150 112 20 2321 83 0 10 chr6 165443044 165443346 -16971896 + AluY SINE Alu 4 302 -9 382 211 232 0 chr6 165443445 165443587 -16971655 + MER104 DNA Tc2 3 177 -3 11430 95 26 6 chr6 165444075 165445789 -16969453 - LOR1-int LTR ERV1 -4342 3778 2032 330 26 0 0 chr6 165448294 165448333 -16966909 + (T)n Simple_repeat Simple_repeat 1 39 0 357 220 70 10 chr6 165448333 165448433 -16966809 - MER50 LTR ERV1 -130 604 499 28 0 0 0 chr6 165448870 165448898 -16966344 + AT_rich Low_complexity Low_complexity 1 28 0 2194 104 3 0 chr6 165450126 165450415 -16964827 - AluSx SINE Alu -22 290 1 389 99 195 0 chr6 165450890 165450981 -16964261 - L1PA13 LINE L1 -4 6159 6046 524 246 185 20 chr6 165451246 165451603 -16963639 + L1MC4a LINE L1 6611 7026 -782 410 259 69 51 chr6 165451675 165451891 -16963351 + L1MC5 LINE L1 7005 7224 -737 1211 153 9 9 chr6 165451972 165452187 -16963055 + L1MC1 LINE L1 6110 6324 -9 24 0 0 0 chr6 165452191 165452215 -16963027 + GC_rich Low_complexity Low_complexity 1 24 0 283 240 94 31 chr6 165452305 165452497 -16962745 + L1MC5 LINE L1 7289 7492 -469 656 190 35 0 chr6 165453323 165453439 -16961803 - FLAM_A SINE Alu -13 120 1 29 0 0 0 chr6 165453635 165453664 -16961578 + AT_rich Low_complexity Low_complexity 1 29 0 528 138 0 0 chr6 165454226 165454306 -16960936 + AluJ/FLAM SINE Alu 1 80 -232 1678 153 67 0 chr6 165454365 165454647 -16960595 - AluJo SINE Alu -11 301 1 677 137 29 0 chr6 165454760 165454862 -16960380 + U6 snRNA snRNA 1 105 -2 2151 123 0 19 chr6 165455063 165455379 -16959863 - AluSx SINE Alu -2 310 1 510 223 134 13 chr6 165455421 165455578 -16959664 + MER5A DNA MER1_type 14 189 0 1488 265 106 57 chr6 165456237 165457256 -16957986 + L2 LINE L2 2232 3312 -1 21 36 0 0 chr6 165457284 165457312 -16957930 + AT_rich Low_complexity Low_complexity 1 28 0 236 366 95 11 chr6 165457914 165458176 -16957066 + L3 LINE CR1 1128 1411 -166 726 262 195 6 chr6 165458196 165458572 -16956670 + L2 LINE L2 2740 3184 -129 503 276 22 0 chr6 165458625 165458759 -16956483 - MER58A DNA MER1_type -43 181 45 312 239 15 0 chr6 165458768 165458835 -16956407 - MER58A DNA MER1_type -39 68 1 351 330 28 9 chr6 165458838 165458947 -16956295 + L2 LINE L2 3199 3309 -4 1039 140 21 32 chr6 165460044 165460230 -16955012 - AluJb SINE Alu -23 289 106 1822 170 0 14 chr6 165460444 165460733 -16954509 - AluJb SINE Alu -25 287 3 249 284 18 64 chr6 165462432 165462541 -16952701 + L2 LINE L2 1824 1927 -1387 181 333 0 14 chr6 165462841 165462910 -16952332 - MER5B DNA MER1_type -109 69 2 219 69 0 0 chr6 165463440 165463469 -16951773 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 381 319 20 64 chr6 165463766 165463970 -16951272 + MIR3 SINE MIR 4 198 -10 32 26 0 0 chr6 165464411 165464450 -16950792 + AT_rich Low_complexity Low_complexity 1 39 0 415 242 181 27 chr6 165464544 165464693 -16950549 - MER5B DNA MER1_type -5 173 2 2551 62 0 0 chr6 165464719 165465024 -16950218 - AluY SINE Alu -6 305 1 22 0 0 0 chr6 165465308 165465330 -16949912 + AT_rich Low_complexity Low_complexity 1 22 0 227 324 27 34 chr6 165465426 165465574 -16949668 - L1MEc LINE L1 -5747 649 503 1544 165 84 11 chr6 165465699 165465984 -16949258 - AluJb SINE Alu -6 306 1 1633 232 103 17 chr6 165465985 165466450 -16948792 - MLT1D LTR MaLR 0 505 1 1410 203 14 27 chr6 165466501 165466797 -16948445 - AluJo SINE Alu -10 292 1 180 0 0 0 chr6 165466814 165466834 -16948408 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1326 199 7 38 chr6 165466836 165467123 -16948119 - AluJo SINE Alu -33 279 2 1115 159 19 14 chr6 165467525 165467733 -16947509 - Tigger1 DNA MER2_type -1 2417 2209 667 178 11 109 chr6 165467743 165467917 -16947325 - Tigger1 DNA MER2_type -2261 157 1 3613 66 4 6 chr6 165468035 165468504 -16946738 + L1PA6 LINE L1 5687 6154 0 877 76 0 0 chr6 165468504 165468621 -16946621 + L1PA8 LINE L1 6052 6170 -2 21 36 0 0 chr6 165470975 165471003 -16944239 + AT_rich Low_complexity Low_complexity 1 28 0 1484 101 13 42 chr6 165471464 165471701 -16943541 + MER30 DNA MER1_type 1 230 0 1688 98 4 8 chr6 165472361 165472596 -16942646 + AluSg1 SINE Alu 1 234 -75 708 330 156 35 chr6 165475068 165475671 -16939571 + L3 LINE CR1 890 1565 -12 1862 137 17 14 chr6 165477410 165477703 -16937539 - AluSx SINE Alu -18 294 1 22 35 0 0 chr6 165477707 165477736 -16937506 + AT_rich Low_complexity Low_complexity 1 29 0 813 319 95 36 chr6 165479701 165479954 -16935288 - L2 LINE L2 0 3313 3076 2077 120 0 7 chr6 165479954 165480264 -16934978 + AluSx SINE Alu 1 308 0 813 319 95 36 chr6 165480264 165480482 -16934760 - L2 LINE L2 -237 3076 2813 1536 196 3 33 chr6 165480630 165480762 -16934480 + AluJo SINE Alu 4 138 -174 2029 125 16 0 chr6 165480762 165481067 -16934175 + AluSx SINE Alu 1 310 -2 1536 196 3 33 chr6 165481067 165481240 -16934002 + AluJo SINE Alu 138 300 -12 1543 256 58 7 chr6 165481243 165481654 -16933588 - L2 LINE L2 -533 2781 2350 22 0 0 0 chr6 165481836 165481858 -16933384 + AT_rich Low_complexity Low_complexity 1 22 0 293 295 49 33 chr6 165481886 165482008 -16933234 + L2 LINE L2 3149 3272 0 2191 108 3 0 chr6 165482346 165482641 -16932601 + AluY SINE Alu 1 296 -15 25 0 0 0 chr6 165482915 165482940 -16932302 + AT_rich Low_complexity Low_complexity 1 25 0 1848 154 23 13 chr6 165483043 165483349 -16931893 - AluSx SINE Alu -3 309 1 420 55 0 0 chr6 165483631 165483686 -16931556 + (GA)n Simple_repeat Simple_repeat 2 56 0 324 293 145 43 chr6 165484278 165484671 -16930571 + L2 LINE L2 2854 3286 -27 21 36 0 0 chr6 165484691 165484719 -16930523 + AT_rich Low_complexity Low_complexity 1 28 0 468 0 0 0 chr6 165485209 165485261 -16929981 + (CA)n Simple_repeat Simple_repeat 2 53 0 1850 137 51 54 chr6 165485428 165485763 -16929479 - MER44D DNA MER2_type -5 604 1 1649 161 17 28 chr6 165485905 165486196 -16929046 + AluJo SINE Alu 1 288 -24 2250 114 0 0 chr6 165486295 165486602 -16928640 - AluSq SINE Alu -6 307 1 67 65 0 0 chr6 165486611 165486734 -16928508 + AT_rich Low_complexity Low_complexity 1 123 0 218 375 0 10 chr6 165487365 165487461 -16927781 + L3 LINE CR1 1483 1577 0 273 238 48 48 chr6 165487550 165487655 -16927587 + MER117 DNA MER1_type 1 105 -92 31 0 0 0 chr6 165488109 165488140 -16927102 + AT_rich Low_complexity Low_complexity 1 31 0 180 345 17 0 chr6 165488502 165488560 -16926682 + MIR3 SINE MIR 119 177 -31 2572 68 0 0 chr6 165489325 165489636 -16925606 + AluY SINE Alu 1 311 0 2356 83 0 0 chr6 165490290 165490590 -16924652 + AluY SINE Alu 1 300 -11 2133 113 0 17 chr6 165490724 165491024 -16924218 + AluSg SINE Alu 1 295 -15 1873 137 87 3 chr6 165491705 165492026 -16923216 - MER7A DNA MER2_type 0 346 1 1563 177 4 15 chr6 165492791 165493062 -16922180 - AluJb SINE Alu -44 268 1 3323 149 19 75 chr6 165493413 165494145 -16921097 + LTR8 LTR ERV1 1 691 0 976 252 65 83 chr6 165494616 165495323 -16919919 + L1ME3A LINE L1 5470 6163 -7 1059 134 12 0 chr6 165495328 165495499 -16919743 + MER2 DNA MER2_type 1 173 -172 297 236 69 0 chr6 165495575 165495647 -16919595 + MER2 DNA MER2_type 269 345 0 341 253 72 0 chr6 165495813 165495896 -16919346 - Charlie2 DNA MER1_type -2658 124 36 351 60 0 0 chr6 165495964 165496014 -16919228 + (TA)n Simple_repeat Simple_repeat 2 51 0 2216 104 10 7 chr6 165496051 165496349 -16918893 - AluSx SINE Alu -13 299 1 2878 81 15 89 chr6 165497126 165497598 -16917644 + MLT2A1 LTR ERVL 1 437 -7 1141 217 43 50 chr6 165497698 165497998 -16917244 - AluJb SINE Alu -2 300 3 1170 153 142 24 chr6 165498255 165498509 -16916733 + L1MD2 LINE L1 5543 5826 -533 3317 137 2 6 chr6 165498518 165499051 -16916191 - L1P LINE L1 -1378 4768 4238 2849 85 0 3 chr6 165499041 165499429 -16915813 + L1PA8A LINE L1 5434 5820 -311 * 21 0 0 0 chr6 165499534 165499555 -16915687 + AT_rich Low_complexity Low_complexity 1 21 0 2184 178 21 78 chr6 165499555 165500117 -16915125 + L1MD2 LINE L1 5814 6343 -16 180 0 0 0 chr6 165500124 165500144 -16915098 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 216 0 0 0 chr6 165500143 165500167 -16915075 + (CA)n Simple_repeat Simple_repeat 2 25 0 300 258 15 0 chr6 165500443 165500509 -16914733 + MER5A DNA MER1_type 40 106 -83 2062 112 0 14 chr6 165500589 165500916 -16914326 + AluSx SINE Alu 1 323 0 369 0 0 0 chr6 165501115 165501156 -16914086 + (CA)n Simple_repeat Simple_repeat 2 42 0 1891 164 3 0 chr6 165501156 165501443 -16913799 - AluSx SINE Alu -24 288 1 184 313 0 50 chr6 165501479 165501559 -16913683 - MIR SINE MIR -121 141 66 2098 119 3 3 chr6 165502725 165503027 -16912215 - AluSx SINE Alu -10 302 1 246 62 0 0 chr6 165503604 165503636 -16911606 + (TA)n Simple_repeat Simple_repeat 1 32 0 409 317 119 49 chr6 165503671 165503999 -16911243 + L1MC4 LINE L1 7537 7887 -155 29 0 0 0 chr6 165504111 165504140 -16911102 + AT_rich Low_complexity Low_complexity 1 29 0 576 248 0 0 chr6 165504182 165504299 -16910943 - FLAM_A SINE Alu -13 120 4 193 275 109 36 chr6 165504300 165504438 -16910804 + MIR SINE MIR 20 167 -95 771 138 0 0 chr6 165505537 165505653 -16909589 + FRAM SINE Alu 38 153 -23 2621 158 93 97 chr6 165506060 165506855 -16908387 + L1MB7 LINE L1 5393 6184 0 2168 121 0 10 chr6 165506866 165507171 -16908071 + AluSx SINE Alu 1 302 -10 1775 173 3 0 chr6 165507322 165507605 -16907637 - AluJb SINE Alu -28 284 1 259 317 153 52 chr6 165508002 165508109 -16907133 + L2 LINE L2 2554 2649 -664 1550 122 70 25 chr6 165508109 165508395 -16906847 - L1PA16 LINE L1 0 6166 5868 259 317 153 52 chr6 165508395 165508788 -16906454 + L2 LINE L2 2649 3102 -211 1843 180 3 0 chr6 165508968 165509268 -16905974 + AluSx SINE Alu 1 301 -11 902 189 6 18 chr6 165509419 165509588 -16905654 - AluJb SINE Alu -10 302 136 324 0 0 0 chr6 165509588 165509624 -16905618 + (GA)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr6 165509623 165509643 -16905599 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 913 193 0 74 chr6 165509644 165509846 -16905396 - AluJo SINE Alu -125 187 1 182 265 20 143 chr6 165510100 165510198 -16905044 + L2 LINE L2 3138 3223 -49 14616 132 59 32 chr6 165510872 165510926 -16904316 + Tigger2 DNA MER2_type 1 52 -2666 2163 134 0 0 chr6 165510926 165511232 -16904010 - AluSx SINE Alu -6 306 1 14616 132 59 32 chr6 165511232 165512174 -16903068 + Tigger2 DNA MER2_type 52 967 -1751 1910 149 16 16 chr6 165512174 165512483 -16902759 + AluJo SINE Alu 1 309 -3 14616 132 59 32 chr6 165512483 165514131 -16901111 + Tigger2 DNA MER2_type 967 2718 0 254 103 0 0 chr6 165514766 165514805 -16900437 + tRNA-Gly-GGA tRNA tRNA 1 39 -36 201 156 0 0 chr6 165514980 165515012 -16900230 + MIR SINE MIR 216 247 -15 547 146 0 11 chr6 165615425 165615538 -16799704 + AluSg/x SINE Alu 196 307 0 800 73 0 9 chr6 165615906 165616045 -16799197 - AluSc SINE Alu 0 312 175 1558 178 7 13 chr6 165617019 165617328 -16797914 + AluJo SINE Alu 1 307 -5 31 0 0 0 chr6 165617420 165617451 -16797791 + AT_rich Low_complexity Low_complexity 1 31 0 1760 102 0 0 chr6 165617501 165617746 -16797496 - AluSg/x SINE Alu -2 310 66 1998 109 9 50 chr6 165618015 165618337 -16796905 - AluSg SINE Alu 0 310 2 413 285 91 63 chr6 165618346 165618599 -16796643 - HAL1 LINE L1 -1453 1054 795 204 122 0 0 chr6 165618817 165618858 -16796384 + (T)n Simple_repeat Simple_repeat 1 41 0 2166 106 7 0 chr6 165619308 165619611 -16795631 - AluSx SINE Alu -7 305 1 2016 115 0 16 chr6 165620151 165620456 -16794786 - AluSx SINE Alu -12 300 1 712 30 20 0 chr6 165620627 165620726 -16794516 + (GA)n Simple_repeat Simple_repeat 1 101 0 1802 100 20 0 chr6 165620949 165621200 -16794042 - AluSq SINE Alu -57 256 1 251 293 82 0 chr6 165621436 165621549 -16793693 + MIR SINE MIR 14 113 -95 281 269 130 0 chr6 165621879 165621987 -16793255 + MIR3 SINE MIR 39 160 -48 1908 138 0 16 chr6 165622077 165622388 -16792854 - AluJb SINE Alu -6 306 1 372 250 60 10 chr6 165622388 165622488 -16792754 - MER5B DNA MER1_type -73 105 1 318 341 96 18 chr6 165622530 165622763 -16792479 + MIR SINE MIR 5 261 -1 1504 126 76 18 chr6 165622803 165623080 -16792162 + L1MA8 LINE L1 5982 6274 -17 1650 106 73 18 chr6 165623131 165623405 -16791837 - AluSx SINE Alu -23 289 1 246 294 128 0 chr6 165624527 165624629 -16790613 - L2 LINE L2 -3 3310 3196 2017 114 0 23 chr6 165624723 165625031 -16790211 - AluSq SINE Alu -5 308 8 2108 97 17 0 chr6 165625582 165625872 -16789370 + AluSq SINE Alu 1 295 -18 321 312 57 64 chr6 165625942 165626172 -16789070 + MIR SINE MIR 8 244 -18 1156 105 37 0 chr6 165627196 165627358 -16787884 + AluSq SINE Alu 1 168 -145 1889 145 3 3 chr6 165628421 165628724 -16786518 + AluSx SINE Alu 1 303 -9 734 134 118 0 chr6 165629129 165629248 -16785994 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 165629248 165629269 -16785973 + AT_rich Low_complexity Low_complexity 1 21 0 1130 183 0 0 chr6 165629278 165629475 -16785767 + AluSx SINE Alu 10 206 -106 2013 138 3 0 chr6 165629575 165629880 -16785362 + AluSx SINE Alu 3 308 -4 3029 154 41 26 chr6 165629930 165630466 -16784776 + L1MB3 LINE L1 5587 6135 -48 2111 96 3 0 chr6 165630466 165630772 -16784470 + AluSp SINE Alu 1 307 0 3029 154 41 26 chr6 165630772 165630820 -16784422 + L1MB3 LINE L1 6135 6181 -2 839 156 0 0 chr6 165631902 165632024 -16783218 + FLAM_A SINE Alu 1 122 -11 195 129 0 0 chr6 165632058 165632089 -16783153 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1724 155 0 23 chr6 165632594 165632903 -16782339 + AluJo SINE Alu 1 302 -10 247 360 0 0 chr6 165634466 165634580 -16780662 + MIR SINE MIR 118 231 -31 1456 208 43 32 chr6 165634657 165635027 -16780215 - MLT1A2 LTR MaLR 0 374 1 1830 122 50 0 chr6 165635099 165635378 -16779864 + AluSx SINE Alu 6 298 -14 2194 99 3 0 chr6 165635593 165635895 -16779347 - AluSx SINE Alu -9 303 1 21 0 0 0 chr6 165636281 165636302 -16778940 + AT_rich Low_complexity Low_complexity 1 21 0 253 290 0 124 chr6 165636436 165636629 -16778613 - L3b LINE CR1 -254 1329 1161 1802 119 32 4 chr6 165637089 165637404 -16777838 + AluSx SINE Alu 1 312 0 38 0 0 0 chr6 165637426 165637464 -16777778 + AT_rich Low_complexity Low_complexity 1 38 0 1450 147 17 0 chr6 165637491 165637729 -16777513 - L1MA9 LINE L1 -179 6133 5892 1807 80 80 14 chr6 165637747 165638023 -16777219 - AluSp SINE Alu -9 304 11 2261 87 0 6 chr6 165638710 165639021 -16776221 - AluSc SINE Alu 0 309 1 2338 90 3 0 chr6 165639929 165640239 -16775003 + AluSp SINE Alu 1 311 -2 2037 110 3 0 chr6 165640303 165640585 -16774657 - AluSq SINE Alu -25 288 6 1887 151 0 13 chr6 165641846 165642157 -16773085 - AluSx SINE Alu -5 307 1 3386 41 0 10 chr6 165642448 165642860 -16772382 - L1PA6 LINE L1 0 6154 5747 330 255 35 136 chr6 165643529 165643674 -16771568 + L3 LINE CR1 755 860 -717 2077 99 7 0 chr6 165643674 165643981 -16771261 + AluSq SINE Alu 1 309 0 330 255 35 136 chr6 165643981 165644120 -16771122 + L3 LINE CR1 860 1011 -566 231 36 0 0 chr6 165644563 165644591 -16770651 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 396 0 0 0 chr6 165644590 165644634 -16770608 + (GA)n Simple_repeat Simple_repeat 1 44 0 345 325 160 0 chr6 165644665 165644865 -16770377 + L3 LINE CR1 1148 1379 -198 216 0 0 0 chr6 165645411 165645435 -16769807 + (CA)n Simple_repeat Simple_repeat 2 25 0 558 304 56 28 chr6 165647715 165647844 -16767398 + MIR SINE MIR 1 140 -122 2668 132 58 18 chr6 165647844 165648291 -16766951 + MER4C LTR ERV1 1 465 0 558 304 56 28 chr6 165648291 165648375 -16766867 + MIR SINE MIR 140 220 -42 199 339 47 63 chr6 165648977 165649104 -16766138 - L2 LINE L2 -2 3270 3146 233 301 108 74 chr6 165649336 165649539 -16765703 + MIR SINE MIR 4 213 -49 1627 148 4 15 chr6 165650128 165650398 -16764844 + AluJo SINE Alu 17 283 -29 21 36 0 0 chr6 165650578 165650606 -16764636 + AT_rich Low_complexity Low_complexity 1 28 0 1766 116 0 81 chr6 165650607 165650937 -16764305 - AluSx SINE Alu 0 305 1 480 157 245 10 chr6 165650943 165651045 -16764197 - FLAM_C SINE Alu -16 127 2 1014 133 0 0 chr6 165651312 165651490 -16763752 - AluSg/x SINE Alu 0 309 132 2211 106 3 0 chr6 165651490 165651801 -16763441 - AluSx SINE Alu 0 312 1 443 288 158 14 chr6 165652994 165653209 -16762033 - LTR16A LTR ERVL -8 442 197 2034 115 7 0 chr6 165653657 165653952 -16761290 + AluSx SINE Alu 1 297 -15 1269 194 60 8 chr6 165654625 165654877 -16760365 - MLT1A1 LTR MaLR 0 365 101 460 159 37 75 chr6 165655452 165655559 -16759683 - MLT1A1 LTR MaLR -260 105 3 199 252 82 48 chr6 165655584 165655731 -16759511 - L2 LINE L2 -526 2788 2637 2213 95 7 0 chr6 165655848 165656152 -16759090 - AluSq SINE Alu 0 313 8 22 0 0 0 chr6 165656879 165656901 -16758341 + AT_rich Low_complexity Low_complexity 1 22 0 806 183 0 0 chr6 165657343 165657474 -16757768 + FLAM_C SINE Alu 3 133 0 2131 110 7 3 chr6 165657638 165657939 -16757303 - AluSx SINE Alu -10 302 1 25 0 0 0 chr6 165659142 165659167 -16756075 + AT_rich Low_complexity Low_complexity 1 25 0 1855 144 39 0 chr6 165659198 165659482 -16755760 - AluSx SINE Alu -17 295 1 2196 123 0 0 chr6 165659489 165659791 -16755451 - AluSx SINE Alu -10 302 1 190 297 117 0 chr6 165660119 165660230 -16755012 - L2 LINE L2 -217 3055 2932 2083 113 0 11 chr6 165660389 165660663 -16754579 + AluSx SINE Alu 1 271 -41 242 28 0 28 chr6 165660672 165660708 -16754534 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 195 129 0 0 chr6 165661450 165661481 -16753761 + (T)n Simple_repeat Simple_repeat 1 31 0 889 93 0 47 chr6 165661492 165661621 -16753621 - FLAM_C SINE Alu -8 125 3 307 220 58 7 chr6 165661670 165661775 -16753467 - MIR3 SINE MIR -101 107 15 1286 137 9 18 chr6 165662569 165662788 -16752454 - AluJb SINE Alu -10 302 86 1709 194 20 130 chr6 165663957 165664551 -16750691 - MLT2B1 LTR ERVL 0 463 2 1246 192 31 16 chr6 165664551 165664806 -16750436 + AluJb SINE Alu 52 310 -2 1032 179 41 15 chr6 165665225 165665421 -16749821 - AluJb SINE Alu -36 276 76 2325 100 0 31 chr6 165665573 165665894 -16749348 - AluSx SINE Alu -1 311 1 2078 148 7 0 chr6 165665964 165666274 -16748968 - AluJb SINE Alu 0 312 1 205 304 72 24 chr6 165666653 165666778 -16748464 - MER5A DNA MER1_type -20 169 39 * 296 263 54 0 chr6 165666682 165666793 -16748449 + MER5B DNA MER1_type 62 169 -9 189 0 0 0 chr6 165667917 165667938 -16747304 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 1602 130 11 58 chr6 165667978 165668254 -16746988 - AluSq SINE Alu -14 299 37 1858 154 41 0 chr6 165669534 165669826 -16745416 + AluJb SINE Alu 1 304 -8 262 246 85 39 chr6 165670103 165670233 -16745009 - MIR SINE MIR -70 192 57 2229 120 10 0 chr6 165670328 165670637 -16744605 - AluSx SINE Alu 0 312 1 2134 134 0 0 chr6 165671240 165671538 -16743704 - AluSx SINE Alu -14 298 1 180 0 0 0 chr6 165671540 165671560 -16743682 + (TTTAA)n Simple_repeat Simple_repeat 4 23 0 646 139 0 82 chr6 165671679 165671801 -16743441 - FLAM_C SINE Alu -19 124 13 237 250 14 0 chr6 165672204 165672276 -16742966 - L1ME4a LINE L1 -93 6028 5956 252 0 0 0 chr6 165672366 165672394 -16742848 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1890 114 4 0 chr6 165672399 165672653 -16742589 - AluSx SINE Alu -37 275 21 2517 65 3 0 chr6 165673000 165673310 -16741932 - AluY SINE Alu 0 311 1 2232 113 0 0 chr6 165673841 165674133 -16741109 - AluSg SINE Alu -18 292 1 1417 181 106 4 chr6 165674364 165674629 -16740613 + AluSg SINE Alu 1 292 -18 21 0 0 0 chr6 165676126 165676147 -16739095 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr6 165676658 165676704 -16738538 + (TA)n Simple_repeat Simple_repeat 2 47 0 240 35 0 0 chr6 165676704 165676733 -16738509 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr6 165677101 165677124 -16738118 + AT_rich Low_complexity Low_complexity 1 23 0 306 67 0 0 chr6 165677186 165677231 -16738011 + (TG)n Simple_repeat Simple_repeat 2 46 0 299 354 9 24 chr6 165678152 165678364 -16736878 + MIR SINE MIR 4 212 -50 2266 99 7 0 chr6 165678392 165678685 -16736557 - AluSx SINE Alu -17 295 1 2387 94 0 0 chr6 165680251 165680550 -16734692 - AluSx SINE Alu -13 299 1 2200 71 44 10 chr6 165681909 165682206 -16733036 + AluY SINE Alu 1 307 -4 1886 152 0 3 chr6 165682584 165682892 -16732350 - AluSx SINE Alu 0 307 1 2251 76 3 24 chr6 165684015 165684323 -16730919 + AluSp SINE Alu 1 302 0 2356 84 0 19 chr6 165684617 165684927 -16730315 - AluSx SINE Alu -6 306 3 2252 162 6 110 chr6 165685475 165685711 -16729531 - L1MB2 LINE L1 -2 6169 5934 904 259 26 58 chr6 165685711 165686058 -16729184 - L1ME1 LINE L1 -185 5981 5646 2768 159 159 24 chr6 165686653 165686828 -16728414 - L1MC3 LINE L1 -219 7566 7416 1818 165 3 34 chr6 165686828 165687149 -16728093 - AluJb SINE Alu -1 311 1 2768 159 159 24 chr6 165687149 165687352 -16727890 - L1MC3 LINE L1 -369 7416 7242 2236 122 3 0 chr6 165687352 165687656 -16727586 - AluSx SINE Alu -7 305 1 2768 159 159 24 chr6 165687656 165688035 -16727207 - L1MC3 LINE L1 -543 7242 6647 388 268 31 10 chr6 165688095 165688192 -16727050 + MER5B DNA MER1_type 67 165 -13 187 357 0 0 chr6 165688247 165688303 -16726939 - L2 LINE L2 -8 3264 3209 379 311 98 25 chr6 165688341 165688585 -16726657 - MIR SINE MIR 0 262 1 279 333 0 82 chr6 165688704 165688851 -16726391 - L2 LINE L2 -182 3090 2956 4937 203 65 161 chr6 165688851 165689093 -16726149 - L1MC4 LINE L1 -258 7784 7520 399 73 0 0 chr6 165689093 165689148 -16726094 + (TG)n Simple_repeat Simple_repeat 2 56 0 1870 133 29 0 chr6 165689148 165689426 -16725816 - AluSx SINE Alu -26 286 1 4937 203 65 161 chr6 165689426 165689637 -16725605 - L1MC4 LINE L1 -521 7521 7291 599 203 8 0 chr6 165689637 165689755 -16725487 - MLT1F1 LTR MaLR -448 119 1 4937 203 65 161 chr6 165689755 165689933 -16725309 - L1MC4 LINE L1 -751 7291 7098 2399 80 10 0 chr6 165689933 165690234 -16725008 + AluSp SINE Alu 1 304 -9 4937 203 65 161 chr6 165690234 165690424 -16724818 - L1MC4 LINE L1 -944 7098 6891 2133 105 11 0 chr6 165690424 165690709 -16724533 + AluSq SINE Alu 1 288 -25 4937 203 65 161 chr6 165690709 165692376 -16722866 - L1MC4 LINE L1 -1151 6891 5469 2286 104 13 0 chr6 165692376 165692685 -16722557 - AluSq SINE Alu 0 313 1 4937 203 65 161 chr6 165692685 165692945 -16722297 - L1MC4 LINE L1 -2573 5469 5186 449 181 43 52 chr6 165693258 165693312 -16721930 + L1ME3 LINE L1 6048 6101 -61 2290 113 0 3 chr6 165693312 165693613 -16721629 + AluSc SINE Alu 1 300 -9 449 181 43 52 chr6 165693613 165693674 -16721568 + L1ME3 LINE L1 6101 6162 0 302 270 54 0 chr6 165694612 165694723 -16720519 + CT-rich Low_complexity Low_complexity 4 120 0 2085 121 14 0 chr6 165694768 165695065 -16720177 - AluSq SINE Alu -12 301 1 1736 140 41 0 chr6 165695307 165695578 -16719664 + AluSx SINE Alu 1 282 -30 375 115 0 0 chr6 165695986 165696038 -16719204 - Alu SINE Alu -248 52 1 1895 122 0 4 chr6 165696561 165696840 -16718402 - AluSx SINE Alu 0 306 29 210 37 0 0 chr6 165697440 165697467 -16717775 + (ATG)n Simple_repeat Simple_repeat 2 28 0 1879 136 3 7 chr6 165697467 165697753 -16717489 - AluJb SINE Alu -27 285 1 1894 78 7 78 chr6 165698254 165698538 -16716704 - AluSx SINE Alu -18 294 31 290 160 0 0 chr6 165698582 165698632 -16716610 - FLAM_A SINE Alu 0 133 84 986 188 0 6 chr6 165698734 165698894 -16716348 - AluJb SINE Alu -17 295 137 1990 164 3 0 chr6 165698894 165699205 -16716037 - AluSx SINE Alu 0 312 1 2026 142 23 0 chr6 165699714 165700017 -16715225 - AluSx SINE Alu -2 310 1 2339 94 13 0 chr6 165700021 165700328 -16714914 - AluSx SINE Alu -1 311 1 1629 187 0 7 chr6 165700706 165701000 -16714242 + AluJb SINE Alu 6 297 -15 2248 89 36 3 chr6 165701434 165701737 -16713505 + AluSq SINE Alu 1 313 0 254 317 61 18 chr6 165701947 165702111 -16713131 - L2 LINE L2 -499 2815 2645 2486 85 0 0 chr6 165702968 165703274 -16711968 - AluSx SINE Alu -6 306 1 28 0 0 0 chr6 165704114 165704142 -16711100 + AT_rich Low_complexity Low_complexity 1 28 0 2117 128 16 0 chr6 165704154 165704459 -16710783 - AluSx SINE Alu -2 310 1 291 65 152 0 chr6 165704639 165704685 -16710557 + Alu SINE Alu 248 300 0 2755 156 89 8 chr6 165705367 165705873 -16709369 - Tigger4(Zombi) DNA MER2_type -1 2730 2184 667 103 0 0 chr6 165705876 165705963 -16709279 - Tigger4(Zombi) DNA MER2_type -2595 136 50 2100 123 0 26 chr6 165706499 165706807 -16708435 - AluSx SINE Alu -12 300 1 22 0 0 0 chr6 165706989 165707011 -16708231 + AT_rich Low_complexity Low_complexity 1 22 0 272 323 67 31 chr6 165707465 165707660 -16707582 - MIR SINE MIR -6 256 55 1858 143 50 4 chr6 165707878 165708157 -16707085 - AluJb SINE Alu -20 292 1 2215 115 0 0 chr6 165708866 165709171 -16706071 - AluSx SINE Alu -5 307 3 2150 139 0 3 chr6 165709476 165709778 -16705464 + AluSx SINE Alu 1 301 -11 2234 100 17 0 chr6 165710253 165710544 -16704698 - AluSg SINE Alu -14 296 1 1859 167 3 0 chr6 165711873 165712160 -16703082 + AluJb SINE Alu 1 288 -24 2221 112 3 10 chr6 165712180 165712474 -16702768 + AluSp SINE Alu 1 292 -21 396 0 0 0 chr6 165712478 165712522 -16702720 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2256 116 0 3 chr6 165712877 165713180 -16702062 + AluSx SINE Alu 1 302 -10 507 250 97 36 chr6 165713691 165713887 -16701355 - MLT1G LTR MaLR -373 217 10 303 286 0 13 chr6 165714135 165714212 -16701030 + L2 LINE L2 3194 3269 -3 360 254 141 21 chr6 165716056 165716198 -16699044 + MIR3 SINE MIR 43 201 -7 2335 113 0 0 chr6 165716234 165716534 -16698708 + AluSx SINE Alu 1 300 -12 186 304 43 29 chr6 165716662 165716731 -16698511 - L2 LINE L2 -2 3270 3201 293 274 167 0 chr6 165716908 165717010 -16698232 - L2 LINE L2 -236 3036 2918 2296 95 0 0 chr6 165717276 165717592 -16697650 + AluSx SINE Alu 1 316 0 322 279 173 0 chr6 165717698 165717802 -16697440 + MIR3 SINE MIR 76 197 -11 2342 65 3 77 chr6 165717854 165718190 -16697052 - AluSp SINE Alu -2 311 1 410 319 76 9 chr6 165718291 165718501 -16696741 - MIR SINE MIR -18 244 21 1399 134 36 5 chr6 165718505 165718728 -16696514 - MER30 DNA MER1_type 0 230 1 1914 123 48 0 chr6 165719047 165719316 -16695926 - AluSx SINE Alu -30 282 1 363 311 113 16 chr6 165719460 165719717 -16695525 + L2 LINE L2 3006 3287 -26 297 183 0 0 chr6 165719728 165719788 -16695454 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 383 319 83 28 chr6 165720910 165721236 -16694006 + L2 LINE L2 2970 3313 0 21 36 0 0 chr6 165721425 165721453 -16693789 + AT_rich Low_complexity Low_complexity 1 28 0 299 213 13 40 chr6 165721636 165721711 -16693531 + MIR SINE MIR 32 104 -158 1765 152 0 4 chr6 165721718 165721995 -16693247 - AluJb SINE Alu -23 289 14 1324 162 0 0 chr6 165721997 165722201 -16693041 - AluJo SINE Alu -102 210 7 286 255 69 0 chr6 165722205 165722307 -16692935 + MIR SINE MIR 92 200 -62 27 61 0 15 chr6 165722350 165722397 -16692845 + AT_rich Low_complexity Low_complexity 1 48 -17 2318 82 4 0 chr6 165722397 165722676 -16692566 + AluSp SINE Alu 15 294 -19 27 61 0 15 chr6 165722676 165722694 -16692548 + AT_rich Low_complexity Low_complexity 48 65 0 534 286 57 29 chr6 165722903 165723113 -16692129 + MIR SINE MIR 32 247 -15 378 384 41 21 chr6 165723173 165723592 -16691650 + L3 LINE CR1 1132 1558 -19 806 296 22 80 chr6 165723779 165724316 -16690926 + Charlie8 DNA MER1_type 1 506 -1911 1270 176 27 101 chr6 165724356 165724692 -16690550 - AluYb8 SINE Alu -7 311 1 492 303 74 37 chr6 165725179 165725529 -16689713 + L3 LINE CR1 1212 1574 -3 6902 153 13 25 chr6 165726026 165727150 -16688092 - L1MA4 LINE L1 -5 6295 5216 1843 173 3 0 chr6 165727150 165727450 -16687792 - AluJo SINE Alu -11 301 1 6902 153 13 25 chr6 165727450 165728561 -16686681 - L1MA4 LINE L1 -1084 5216 4093 2241 88 3 7 chr6 165728715 165728999 -16686243 + AluSp SINE Alu 1 283 -30 390 91 0 0 chr6 165729016 165729071 -16686171 + (TG)n Simple_repeat Simple_repeat 2 56 0 2103 150 24 0 chr6 165729555 165729894 -16685348 - MER7A DNA MER2_type -1 345 1 380 288 14 58 chr6 165730386 165730525 -16684717 - L2 LINE L2 0 3313 3181 * 441 300 29 0 chr6 165730520 165730660 -16684582 - MIR SINE MIR -37 225 82 235 234 0 0 chr6 165730661 165730708 -16684534 - MIR SINE MIR -135 127 81 1894 110 37 11 chr6 165731517 165731810 -16683432 - AluSc SINE Alu 0 300 1 1784 170 24 14 chr6 165731810 165732099 -16683143 - AluSx SINE Alu -20 292 1 22 0 0 0 chr6 165732309 165732331 -16682911 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr6 165732577 165732620 -16682622 + (TG)n Simple_repeat Simple_repeat 2 44 0 253 286 27 9 chr6 165732643 165732755 -16682487 - L1MC4 LINE L1 -1 8041 7928 2568 76 0 0 chr6 165733251 165733555 -16681687 + AluSx SINE Alu 1 304 -8 316 273 68 30 chr6 165734003 165734135 -16681107 + MIR3 SINE MIR 68 204 -4 2365 75 3 0 chr6 165734286 165734581 -16680661 + AluY SINE Alu 1 296 -15 1415 145 5 9 chr6 165734774 165734995 -16680247 - AluJb SINE Alu -20 292 73 1664 156 42 0 chr6 165734995 165735258 -16679984 - AluSx SINE Alu -38 274 1 1117 139 133 105 chr6 165735266 165735560 -16679682 - AluJo SINE Alu 0 302 1 2081 124 7 0 chr6 165735785 165736114 -16679128 - AluSx SINE Alu 0 331 1 2560 65 0 3 chr6 165738787 165739093 -16676149 - AluY SINE Alu -6 305 1 340 267 151 14 chr6 165739478 165739624 -16675618 - MIR3 SINE MIR -2 206 41 2314 95 7 13 chr6 165739756 165740062 -16675180 - AluSq SINE Alu -9 304 1 188 196 0 36 chr6 165740098 165740154 -16675088 + CT-rich Low_complexity Low_complexity 1 54 0 360 0 0 0 chr6 165741108 165741148 -16674094 + (CA)n Simple_repeat Simple_repeat 2 41 0 1721 256 135 58 chr6 165741447 165741928 -16673314 + L2 LINE L2 1533 1976 -1337 2384 67 17 13 chr6 165741928 165742226 -16673016 - AluSx SINE Alu -5 307 9 1721 256 135 58 chr6 165742226 165743249 -16671993 + L2 LINE L2 1976 3156 -157 2088 116 3 10 chr6 165743249 165743541 -16671701 + AluSq SINE Alu 1 290 -23 1721 256 135 58 chr6 165743541 165743712 -16671530 + L2 LINE L2 3156 3312 -1 207 0 0 0 chr6 165743825 165743848 -16671394 + (TA)n Simple_repeat Simple_repeat 2 24 0 2190 128 0 3 chr6 165743852 165744165 -16671077 - AluSx SINE Alu 0 312 1 25 0 0 0 chr6 165744625 165744650 -16670592 + AT_rich Low_complexity Low_complexity 1 25 0 2259 100 0 0 chr6 165744650 165744939 -16670303 - AluSx SINE Alu -23 289 1 771 175 0 0 chr6 165745038 165745164 -16670078 - AluJo SINE Alu -178 134 9 1759 146 3 35 chr6 165745172 165745459 -16669783 + AluJb SINE Alu 1 278 -34 1849 129 57 4 chr6 165745647 165745926 -16669316 + AluSx SINE Alu 1 294 -18 22 0 0 0 chr6 165746855 165746877 -16668365 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 165746992 165747022 -16668220 + AT_rich Low_complexity Low_complexity 1 30 0 290 98 24 0 chr6 165747022 165747063 -16668179 - MER57A LTR ERV1 -67 336 295 2164 110 0 0 chr6 165747272 165747553 -16667689 - AluSx SINE Alu -31 281 1 2289 112 0 6 chr6 165748193 165748545 -16666697 - AluSx SINE Alu 0 350 1 180 77 0 0 chr6 165748823 165748849 -16666393 + (TTCCC)n Simple_repeat Simple_repeat 1 26 0 2339 88 7 0 chr6 165748849 165749145 -16666097 - AluSx SINE Alu -14 298 1 1973 148 10 0 chr6 165749152 165749449 -16665793 - AluSx SINE Alu -12 300 1 500 252 24 100 chr6 165749575 165749825 -16665417 + MER112 DNA MER1_type 15 245 -15 1051 189 37 28 chr6 165750487 165750704 -16664538 - MER20 DNA MER1_type 0 219 1 29 28 0 0 chr6 165750904 165750940 -16664302 + AT_rich Low_complexity Low_complexity 1 36 0 371 296 40 45 chr6 165751159 165751335 -16663907 - MIR SINE MIR -41 221 47 24 0 0 0 chr6 165752410 165752434 -16662808 + AT_rich Low_complexity Low_complexity 1 24 0 1816 137 3 43 chr6 165753832 165754131 -16661111 - AluSx SINE Alu -25 287 1 2323 94 3 3 chr6 165754142 165754441 -16660801 - AluSp SINE Alu -14 299 1 26 0 0 0 chr6 165754671 165754697 -16660545 + AT_rich Low_complexity Low_complexity 1 26 0 275 125 0 0 chr6 165754820 165754860 -16660382 + Alu SINE Alu 254 293 -7 3591 157 34 97 chr6 165754874 165755133 -16660109 + L1MB4 LINE L1 5349 5623 -557 2143 137 3 0 chr6 165755133 165755440 -16659802 + AluSx SINE Alu 1 308 -4 3591 157 34 97 chr6 165755440 165756026 -16659216 + L1MB4 LINE L1 5623 6141 -39 2241 80 3 24 chr6 165756026 165756334 -16658908 + AluSp SINE Alu 1 302 0 2391 78 0 19 chr6 165756626 165756935 -16658307 - AluSx SINE Alu -7 305 3 2252 162 6 110 chr6 165757483 165757719 -16657523 - L1MB2 LINE L1 -2 6169 5934 904 259 26 58 chr6 165757719 165758066 -16657176 - L1ME1 LINE L1 -185 5981 5646 487 197 0 83 chr6 165758500 165758632 -16656610 + FLAM_A SINE Alu 2 122 -11 440 123 0 0 chr6 165758828 165758893 -16656349 + AluSc SINE Alu 171 235 -74 759 187 0 8 chr6 165758992 165759126 -16656116 - FLAM_A SINE Alu 0 133 1 2250 127 0 0 chr6 165760010 165760317 -16654925 - AluSx SINE Alu -5 307 1 2111 116 7 0 chr6 165761152 165761455 -16653787 - AluSx SINE Alu -7 305 1 22 0 0 0 chr6 165761467 165761489 -16653753 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chr6 165761519 165761569 -16653673 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 666 246 82 29 chr6 165762278 165762558 -16652684 + LTR16C LTR ERVL 195 489 -2 227 279 0 15 chr6 165763465 165763533 -16651709 - MER5A DNA MER1_type -1 188 122 2287 86 7 0 chr6 165763602 165763906 -16651336 - AluSp SINE Alu -7 306 1 597 251 146 32 chr6 165767197 165767416 -16647826 + MIR SINE MIR 13 256 -6 2114 119 0 10 chr6 165767538 165767850 -16647392 + AluSx SINE Alu 1 309 -3 1571 167 185 31 chr6 165767911 165768294 -16646948 + MLT1D LTR MaLR 1 442 -63 284 344 57 33 chr6 165768299 165768421 -16646821 - L2 LINE L2 -36 3236 3112 5044 197 117 23 chr6 165768444 165769151 -16646091 - Charlie1a DNA MER1_type -1309 1452 812 1817 138 7 3 chr6 165769151 165769441 -16645801 + AluJb SINE Alu 1 291 -21 5044 197 117 23 chr6 165769441 165770061 -16645181 - Charlie1a DNA MER1_type -1949 812 1 190 176 187 88 chr6 165770613 165770704 -16644538 + L2 LINE L2 3214 3313 0 2554 93 33 8 chr6 165770786 165771152 -16644090 + THE1C LTR MaLR 1 375 0 851 270 167 34 chr6 165771478 165772349 -16642893 - L2 LINE L2 -9 3304 2346 453 175 19 39 chr6 165772471 165772574 -16642668 - MER90 LTR ERV1 -172 442 342 546 296 196 21 chr6 165773270 165773571 -16641671 + Tigger8 DNA MER2_type 70 317 -349 2701 102 11 0 chr6 165773571 165773942 -16641300 - THE1C LTR MaLR 0 375 1 546 296 196 21 chr6 165773942 165774063 -16641179 + Tigger8 DNA MER2_type 317 566 -100 233 279 0 33 chr6 165774320 165774381 -16640861 + L2 LINE L2 3209 3267 -5 2245 87 3 13 chr6 165774409 165774719 -16640523 + AluSp SINE Alu 1 307 -6 2046 102 22 38 chr6 165775091 165775406 -16639836 - AluSx SINE Alu -2 310 1 186 270 191 48 chr6 165775520 165775646 -16639596 + MIR3 SINE MIR 50 193 -15 298 260 47 102 chr6 165775889 165776016 -16639226 - MIR SINE MIR -75 187 68 1930 122 10 100 chr6 165776488 165776651 -16638591 - L1MB7 LINE L1 -19 6165 5989 2171 113 0 0 chr6 165776651 165776960 -16638282 + AluSc SINE Alu 1 309 0 1930 122 10 100 chr6 165776960 165777206 -16638036 - L1MB7 LINE L1 -195 5989 5793 1560 163 0 35 chr6 165778457 165778746 -16636496 - AluJo SINE Alu -23 289 11 1967 125 12 47 chr6 165778784 165779105 -16636137 + AluSx SINE Alu 1 310 -2 242 292 0 0 chr6 165779339 165779404 -16635838 + MIR3 SINE MIR 137 201 -7 1314 251 137 48 chr6 165779974 165780687 -16634555 + MER20B DNA MER1_type 7 783 0 1187 177 147 68 chr6 165780825 165781192 -16634050 - MSTD LTR MaLR 0 396 1 342 0 0 0 chr6 165781211 165781249 -16633993 + (A)n Simple_repeat Simple_repeat 1 38 0 2006 99 42 0 chr6 165782279 165782563 -16632679 - AluY SINE Alu -15 296 1 290 241 17 0 chr6 165784082 165784140 -16631102 + L2 LINE L2 3187 3245 -27 314 320 142 33 chr6 165784426 165784729 -16630513 + L2 LINE L2 2164 2499 -815 325 298 0 0 chr6 165785262 165785346 -16629896 + L2 LINE L2 3229 3312 -1 230 191 21 32 chr6 165786227 165786321 -16628921 + T-rich Low_complexity Low_complexity 1 93 0 1477 172 6 56 chr6 165786346 165786665 -16628577 - AluJo SINE Alu -9 303 1 3218 179 60 12 chr6 165787736 165788401 -16626841 - L1MB4 LINE L1 -8 6172 5476 8622 178 70 31 chr6 165788627 165790316 -16624926 - MER52A LTR ERV1 0 1755 1 25 31 0 0 chr6 165790816 165790848 -16624394 + AT_rich Low_complexity Low_complexity 1 32 0 786 161 0 0 chr6 165790851 165790969 -16624273 - FLAM_C SINE Alu -15 118 1 39 0 0 0 chr6 165791733 165791772 -16623470 + AT_rich Low_complexity Low_complexity 1 39 0 1759 167 0 3 chr6 165791832 165792137 -16623105 - AluJb SINE Alu -8 304 1 334 316 48 30 chr6 165794436 165794604 -16620638 + MIR SINE MIR 20 192 -68 180 309 44 0 chr6 165796512 165796580 -16618662 + MIR SINE MIR 114 184 -78 1814 83 38 4 chr6 165796802 165797066 -16618176 - L1PA7 LINE L1 -8 6146 5874 25 51 0 0 chr6 165797139 165797178 -16618064 + AT_rich Low_complexity Low_complexity 1 39 0 2133 121 0 0 chr6 165797975 165798282 -16616960 - AluSx SINE Alu -5 307 1 2012 143 0 0 chr6 165798480 165798787 -16616455 + AluSx SINE Alu 5 311 -1 222 37 0 0 chr6 165799675 165799702 -16615540 + (T)n Simple_repeat Simple_repeat 1 27 0 1743 161 4 0 chr6 165801109 165801413 -16613829 - AluSx SINE Alu 0 305 1 2069 97 18 0 chr6 165802545 165802823 -16612419 + AluSq SINE Alu 1 283 -30 283 295 45 45 chr6 165803495 165803607 -16611635 - MIR SINE MIR -52 210 99 264 245 0 0 chr6 165804620 165804669 -16610573 + AluJ/monomer SINE Alu 1 49 -251 289 247 21 41 chr6 165805338 165805435 -16609807 + L2 LINE L2 3178 3272 0 273 295 205 38 chr6 165805530 165805740 -16609502 - MIR SINE MIR 0 262 18 2641 92 19 8 chr6 165805857 165806217 -16609025 - THE1B LTR MaLR 0 364 1 23 78 0 0 chr6 165806932 165806983 -16608259 + AT_rich Low_complexity Low_complexity 1 51 0 2076 102 3 30 chr6 165806994 165807299 -16607943 - AluSx SINE Alu -15 297 1 2079 121 0 19 chr6 165807954 165808268 -16606974 + AluSx SINE Alu 5 312 0 1725 148 34 14 chr6 165809844 165810141 -16605101 + AluJo SINE Alu 1 303 -9 477 239 231 0 chr6 165810458 165810592 -16604650 - AluJo/FRAM SINE Alu -1 301 137 239 170 21 0 chr6 165810592 165810639 -16604603 - AluJo/FRAM SINE Alu -166 136 89 1282 170 0 9 chr6 165810641 165810864 -16604378 - AluJb SINE Alu -91 221 1 314 257 37 0 chr6 165811125 165811234 -16604008 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 328 318 56 4 chr6 165811418 165811575 -16603667 - MIR SINE MIR -77 185 20 1762 164 38 3 chr6 165862349 165862642 -16552600 + AluSx SINE Alu 1 303 -9 670 239 96 90 chr6 165863331 165863646 -16551596 + MLT1J LTR MaLR 1 320 -191 719 185 6 39 chr6 165863646 165863762 -16551480 - MER5B DNA MER1_type -4 174 65 2405 88 0 0 chr6 165863762 165864056 -16551186 - AluSq SINE Alu -19 294 1 719 185 6 39 chr6 165864056 165864117 -16551125 - MER5B DNA MER1_type -113 65 3 670 239 96 90 chr6 165864117 165864156 -16551086 + MLT1J LTR MaLR 320 357 -154 417 301 37 15 chr6 165864342 165864478 -16550764 + MIR3 SINE MIR 16 154 -54 263 295 107 9 chr6 165864486 165864598 -16550644 + L2 LINE L2 3139 3261 -11 1143 160 5 64 chr6 165864606 165864825 -16550417 + AluJo SINE Alu 4 209 -103 805 122 0 0 chr6 165864925 165865040 -16550202 - FLAM_C SINE Alu -18 115 1 566 255 25 13 chr6 165865474 165865631 -16549611 - MER5B DNA MER1_type -18 160 2 181 222 19 0 chr6 165866062 165866116 -16549126 - MIR SINE MIR -72 136 82 272 258 225 20 chr6 165866179 165866330 -16548912 + MER5A DNA MER1_type 7 188 -1 310 313 28 56 chr6 165866372 165866656 -16548586 + L2 LINE L2 2034 2309 -1005 559 312 77 5 chr6 165866720 165866941 -16548301 - MIR SINE MIR -13 249 13 1293 233 89 0 chr6 165867096 165867471 -16547771 + L2 LINE L2 2598 2996 -317 2281 106 14 3 chr6 165867764 165868057 -16547185 + AluSc SINE Alu 1 296 -13 318 292 135 11 chr6 165868084 165868262 -16546980 + L2 LINE L2 2848 3047 -225 234 319 11 33 chr6 165868368 165868459 -16546783 + L2 LINE L2 3184 3272 0 398 313 0 4 chr6 165868487 165868613 -16546629 + MIR SINE MIR 33 154 -62 280 260 27 14 chr6 165871630 165871703 -16543539 - L2 LINE L2 -1 3271 3198 350 206 167 48 chr6 165875738 165875864 -16539378 - MIR SINE MIR -110 152 12 666 145 60 0 chr6 165875954 165876071 -16539171 - MER3 DNA MER1_type -81 128 5 680 243 78 14 chr6 165876076 165876180 -16539062 + MIR SINE MIR 40 136 -126 1856 146 17 20 chr6 165876180 165876474 -16538768 + AluJo SINE Alu 1 293 -19 680 243 78 14 chr6 165876474 165876577 -16538665 + MIR SINE MIR 136 259 -3 279 315 27 18 chr6 165876580 165876691 -16538551 - MIR3 SINE MIR -39 169 58 332 233 14 0 chr6 165876833 165876906 -16538336 + AluS SINE Alu 1 74 -229 306 232 144 24 chr6 165876984 165877109 -16538133 + L2 LINE L2 3174 3313 0 251 193 18 18 chr6 165877110 165877167 -16538075 - MIR SINE MIR -63 145 89 492 256 48 6 chr6 165877947 165878115 -16537127 - L1ME4a LINE L1 -1 6120 5946 1411 167 9 5 chr6 165878363 165878585 -16536657 - AluJo SINE Alu -5 307 85 828 127 0 0 chr6 165878596 165878706 -16536536 + FRAM SINE Alu 54 163 -13 224 222 0 0 chr6 165878706 165878751 -16536491 + MIR SINE MIR 153 197 -65 1369 234 50 8 chr6 165878768 165879131 -16536111 + LTR16C LTR ERVL 114 491 0 424 294 132 15 chr6 165879131 165879335 -16535907 - L2 LINE L2 -167 3146 2919 279 125 62 0 chr6 165880021 165880069 -16535173 - L2 LINE L2 0 3313 3263 305 177 97 0 chr6 165880174 165880236 -16535006 - MER63 DNA MER1_type -368 694 1 197 298 128 14 chr6 165880437 165880578 -16534664 - L2 LINE L2 -212 3060 2904 228 277 108 0 chr6 165881538 165881621 -16533621 - MIR SINE MIR -60 202 111 222 278 28 0 chr6 165881686 165881758 -16533484 - MIR SINE MIR -63 199 126 495 185 0 11 chr6 165881954 165882046 -16533196 + MIR SINE MIR 67 157 -105 325 274 20 0 chr6 165882049 165882151 -16533091 - MIR SINE MIR -1 261 158 2300 110 0 22 chr6 165882267 165882586 -16532656 + AluSx SINE Alu 1 312 0 419 272 48 7 chr6 165883056 165883203 -16532039 + L2 LINE L2 2906 3058 -214 883 256 29 20 chr6 165883313 165883559 -16531683 + MIR SINE MIR 15 262 0 872 234 24 28 chr6 165883683 165883935 -16531307 - LTR67 LTR ERVL 0 557 307 464 227 45 9 chr6 165883941 165884051 -16531191 - MER115 DNA AcHobo -7 686 573 1520 227 161 36 chr6 165884057 165884586 -16530656 - MLT1G1 LTR MaLR 0 595 1 2012 273 52 4 chr6 165884594 165885129 -16530113 - MER115 DNA AcHobo -131 562 2 292 270 40 0 chr6 165885131 165885205 -16530037 - LTR67 LTR ERVL -254 303 227 2352 86 7 0 chr6 165885480 165885782 -16529460 - AluSq SINE Alu -9 304 1 347 304 121 29 chr6 165887548 165887755 -16527487 + MIR SINE MIR 37 262 0 2356 106 0 0 chr6 165889438 165889740 -16525502 - AluSq SINE Alu -11 302 1 1950 109 53 0 chr6 165890354 165890620 -16524622 + AluJb SINE Alu 1 280 -32 209 81 0 27 chr6 165890620 165890657 -16524585 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 227 315 34 0 chr6 165891256 165891345 -16523897 - MIR3 SINE MIR -9 199 108 418 202 176 0 chr6 165892956 165893075 -16522167 + L2 LINE L2 3169 3308 -5 1916 165 40 3 chr6 165893091 165893443 -16521799 + MER47A DNA MER2_type 1 365 -1 648 195 113 103 chr6 165894257 165894351 -16520891 + LTR16A1 LTR ERVL 150 242 -215 315 0 0 0 chr6 165894351 165894386 -16520856 + (CA)n Simple_repeat Simple_repeat 2 36 0 648 195 113 103 chr6 165894386 165894593 -16520649 + LTR16A1 LTR ERVL 242 454 -3 576 0 0 0 chr6 165894593 165894657 -16520585 + (CA)n Simple_repeat Simple_repeat 2 65 0 3823 182 12 25 chr6 165895116 165895816 -16519426 + MER49 LTR ERV1 180 871 -52 2398 83 0 43 chr6 165895816 165896140 -16519102 + AluSg SINE Alu 1 310 0 3823 182 12 25 chr6 165896140 165896193 -16519049 + MER49 LTR ERV1 871 923 0 284 164 73 0 chr6 165896402 165896457 -16518785 + L2 LINE L2 3214 3272 0 243 272 26 53 chr6 165896677 165896791 -16518451 + MIR SINE MIR 110 220 -42 480 252 50 8 chr6 165897087 165897206 -16518036 + MIR3 SINE MIR 83 206 -2 2118 146 7 0 chr6 165897721 165898015 -16517227 + AluJo SINE Alu 1 296 -16 1222 243 21 104 chr6 165898063 165898588 -16516654 + L1ME3 LINE L1 5550 5980 -184 2399 104 0 0 chr6 165898588 165898896 -16516346 - AluSg SINE Alu -2 308 1 1222 243 21 104 chr6 165898896 165899067 -16516175 + L1ME3 LINE L1 5980 6164 0 304 266 87 43 chr6 165899546 165899753 -16515489 - L2 LINE L2 -38 3275 3060 656 234 84 66 chr6 165899758 165899985 -16515257 + MIR SINE MIR 20 250 -12 534 186 224 39 chr6 165900345 165900501 -16514741 + MIR SINE MIR 78 262 0 284 353 41 0 chr6 165900689 165900811 -16514431 - MIR3 SINE MIR -68 140 14 440 200 81 75 chr6 165901047 165901207 -16514035 - MER103 DNA DNA -2 164 4 1979 140 3 3 chr6 165901745 165902030 -16513212 + AluJb SINE Alu 17 301 -11 1653 142 68 21 chr6 165902039 165902320 -16512922 + AluJo SINE Alu 1 294 -18 450 265 108 0 chr6 165902848 165903014 -16512228 - MIR SINE MIR -3 259 76 205 329 14 0 chr6 165903882 165903952 -16511290 - L2 LINE L2 -16 3256 3186 2300 119 0 3 chr6 165904644 165904955 -16510287 + AluSx SINE Alu 2 311 -1 613 263 5 78 chr6 165905096 165905301 -16509941 + MIR SINE MIR 67 256 -6 208 228 37 79 chr6 165905800 165905884 -16509358 + MIR SINE MIR 72 151 -65 270 292 100 25 chr6 165906492 165906612 -16508630 - MIR SINE MIR -63 145 17 408 328 8 0 chr6 165907194 165907316 -16507926 - MER5B DNA MER1_type -18 160 38 844 246 42 9 chr6 165907322 165907537 -16507705 - L1ME3 LINE L1 0 6162 5941 297 280 51 4 chr6 165907592 165907712 -16507530 - MIR SINE MIR -62 146 35 2134 146 0 0 chr6 165907814 165908109 -16507133 + AluJb SINE Alu 1 295 -17 2409 106 0 0 chr6 165908113 165908416 -16506826 + AluSc SINE Alu 3 305 -4 333 68 0 0 chr6 165910286 165910330 -16504912 - LTR23 LTR ERV1 -74 363 320 300 342 33 33 chr6 165910912 165911064 -16504178 - HAL1b LINE L1 -7 1341 1190 701 233 90 6 chr6 165911080 165911286 -16503956 + MIR SINE MIR 19 234 -28 452 267 80 34 chr6 165911972 165912148 -16503094 - L2 LINE L2 0 3313 3130 226 281 6 79 chr6 165912269 165912433 -16502809 - ORSL DNA AcHobo 0 275 124 1478 221 105 20 chr6 165912643 165913081 -16502161 - MLT1J LTR MaLR -31 480 6 282 330 122 0 chr6 165913570 165913685 -16501557 + L2 LINE L2 3134 3262 -10 2282 118 3 0 chr6 165914036 165914342 -16500900 - AluSq SINE Alu -6 307 1 383 291 35 0 chr6 165914816 165914957 -16500285 + (CACCC)n Simple_repeat Simple_repeat 3 148 0 1941 215 23 0 chr6 165915589 165916021 -16499221 - Charlie4a DNA MER1_type 0 508 67 2358 100 3 6 chr6 165916023 165916334 -16498908 + AluSx SINE Alu 1 310 -2 422 353 23 23 chr6 165916659 165916920 -16498322 + L1ME LINE L1 5557 5817 -304 727 238 144 13 chr6 165917637 165917936 -16497306 + L2 LINE L2 2442 2779 -535 396 195 124 44 chr6 165918065 165918178 -16497064 + L1ME1 LINE L1 6037 6158 -6 208 191 0 0 chr6 165919352 165919394 -16495848 + MIR SINE MIR 103 144 -118 335 275 192 0 chr6 165919462 165919629 -16495613 - MIR SINE MIR -62 200 2 471 78 0 0 chr6 165919897 165919961 -16495281 + (TA)n Simple_repeat Simple_repeat 2 65 0 204 121 30 0 chr6 165920160 165920193 -16495049 + GA-rich Low_complexity Low_complexity 2 35 0 232 174 22 0 chr6 165920580 165920626 -16494616 + L2 LINE L2 3192 3238 -75 910 257 134 21 chr6 165920627 165921234 -16494008 - L2 LINE L2 0 3313 2657 308 257 0 0 chr6 165921234 165921308 -16493934 + L2 LINE L2 3195 3268 -4 238 350 0 42 chr6 165921430 165921550 -16493692 - MIR SINE MIR -42 220 106 231 277 71 85 chr6 165922070 165922211 -16493031 - L2 LINE L2 -1 3271 3133 384 198 0 12 chr6 165922426 165922507 -16492735 - AluJ/FRAM SINE Alu 0 302 223 670 219 110 26 chr6 165923528 165923756 -16491486 - MIR SINE MIR 0 262 16 216 346 6 34 chr6 165924402 165924581 -16490661 + GA-rich Low_complexity Low_complexity 1 174 0 238 308 23 19 chr6 165924627 165924822 -16490420 + GA-rich Low_complexity Low_complexity 1 195 0 190 203 0 94 chr6 165924902 165924966 -16490276 + L3 LINE CR1 1436 1493 -84 872 223 64 5 chr6 165926591 165926811 -16488431 + MIR SINE MIR 2 234 -28 499 240 53 20 chr6 165927315 165927465 -16487777 + MLT1G LTR MaLR 428 582 -8 399 222 50 10 chr6 165928077 165928176 -16487066 + MER99 DNA DNA 1 103 -725 1807 162 18 0 chr6 165928204 165928517 -16486725 - AluSx SINE Alu 0 318 1 1543 212 14 3 chr6 165928568 165928874 -16486368 + AluJo SINE Alu 1 309 0 24 0 0 0 chr6 165929162 165929186 -16486056 + AT_rich Low_complexity Low_complexity 1 24 0 1818 168 3 0 chr6 165929206 165929504 -16485738 - AluJb SINE Alu -13 299 1 1169 146 0 0 chr6 165929564 165929735 -16485507 - FRAM SINE Alu -8 168 1 3031 178 22 11 chr6 165930056 165930600 -16484642 + MER99 DNA DNA 214 763 -65 361 133 17 0 chr6 165931139 165931199 -16484043 + MLT1F1 LTR MaLR 507 567 0 830 243 49 73 chr6 165931828 165931915 -16483327 - L1MEd LINE L1 -4863 1256 1168 1570 136 97 39 chr6 165931915 165932194 -16483048 - AluJo SINE Alu -17 295 1 830 243 49 73 chr6 165932194 165932476 -16482766 - L1MEd LINE L1 -4951 1168 896 23 0 0 0 chr6 165932544 165932567 -16482675 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 165932658 165932683 -16482559 + AT_rich Low_complexity Low_complexity 1 25 0 280 296 139 9 chr6 165933317 165933432 -16481810 + L2 LINE L2 3179 3308 -5 377 323 62 55 chr6 165933448 165933751 -16481491 - L2 LINE L2 -341 2973 2665 1920 138 3 26 chr6 165933751 165934056 -16481186 + AluJb SINE Alu 1 298 -14 377 323 62 55 chr6 165934056 165934170 -16481072 - L2 LINE L2 -649 2665 2553 1439 166 6 93 chr6 165934213 165934526 -16480716 + AluJb SINE Alu 10 295 -17 1948 139 0 33 chr6 165935232 165935534 -16479708 + AluJb SINE Alu 1 292 -20 189 0 0 0 chr6 165936704 165936725 -16478517 + (A)n Simple_repeat Simple_repeat 1 21 0 286 309 146 0 chr6 165938662 165938772 -16476470 + MER91A DNA MER1_type 1 126 -70 383 45 182 0 chr6 165945150 165945216 -16470026 - MLT2A1 LTR ERVL 0 444 367 273 68 81 0 chr6 165945222 165945296 -16469946 + (TA)n Simple_repeat Simple_repeat 2 81 0 3279 72 0 5 chr6 165945296 165945701 -16469541 - MLT2A1 LTR ERVL -41 403 1 226 352 23 23 chr6 165945721 165945849 -16469393 + MER5B DNA MER1_type 12 139 -39 2545 62 0 3 chr6 165946078 165946385 -16468857 + AluY SINE Alu 1 306 -5 2175 125 0 16 chr6 165946553 165946857 -16468385 - AluSx SINE Alu -13 299 1 2650 157 17 24 chr6 165946911 165947375 -16467867 - MER65C LTR ERV1 0 461 1 23 0 0 0 chr6 165947645 165947668 -16467574 + AT_rich Low_complexity Low_complexity 1 23 0 241 231 0 0 chr6 165948198 165948215 -16467027 + A-rich Low_complexity Low_complexity 1 17 -48 3126 21 0 0 chr6 165948215 165948548 -16466694 + SVA Other Other 1054 1386 0 241 231 0 0 chr6 165948548 165948595 -16466647 + A-rich Low_complexity Low_complexity 16 65 0 280 293 122 27 chr6 165948823 165948892 -16466350 + MIR SINE MIR 57 118 -144 2291 122 0 0 chr6 165948892 165949204 -16466038 - AluSx SINE Alu 0 312 1 280 293 122 27 chr6 165949204 165949322 -16465920 + MIR SINE MIR 118 262 0 491 229 8 8 chr6 165949452 165949574 -16465668 - L2 LINE L2 0 3313 3192 726 280 95 6 chr6 165949584 165949920 -16465322 - L2 LINE L2 -725 2589 2224 22 35 0 0 chr6 165951869 165951898 -16463344 + AT_rich Low_complexity Low_complexity 1 29 0 192 254 42 42 chr6 165953386 165953457 -16461785 + MIR3 SINE MIR 127 197 -11 493 211 86 46 chr6 165953571 165953723 -16461519 - MIR SINE MIR -15 247 90 2517 60 0 25 chr6 165954519 165954834 -16460408 + AluY SINE Alu 1 307 -4 437 222 75 71 chr6 165958096 165958308 -16456934 - MIR SINE MIR -21 241 29 234 269 15 0 chr6 165958385 165958452 -16456790 + MIR SINE MIR 147 214 -48 1055 201 34 0 chr6 165958501 165958710 -16456532 + MER20 DNA MER1_type 1 216 -3 204 281 31 70 chr6 165959015 165959143 -16456099 - L2 LINE L2 -850 2464 2342 757 225 81 36 chr6 165959811 165960211 -16455031 + LTR16A1 LTR ERVL 8 457 0 22 70 0 0 chr6 165960612 165960655 -16454587 + AT_rich Low_complexity Low_complexity 1 43 0 2518 85 0 0 chr6 165961022 165961329 -16453913 + AluSx SINE Alu 1 307 -5 2519 58 0 0 chr6 165962314 165962609 -16452633 - AluY SINE Alu -16 295 1 834 182 7 7 chr6 165962751 165962894 -16452348 + AluSx SINE Alu 21 163 -149 22 35 0 0 chr6 165963425 165963454 -16451788 + AT_rich Low_complexity Low_complexity 1 29 0 204 355 29 58 chr6 165963970 165964108 -16451134 + L2 LINE L2 3134 3267 -5 256 204 10 107 chr6 165964426 165964529 -16450713 + MER94 DNA DNA 3 95 -39 24 67 0 0 chr6 165965485 165965530 -16449712 + AT_rich Low_complexity Low_complexity 1 45 0 241 288 134 29 chr6 165965633 165965939 -16449303 + L1ME LINE L1 4792 5129 -1017 252 275 12 0 chr6 165965952 165966032 -16449210 + (TA)n Simple_repeat Simple_repeat 1 81 0 343 300 0 0 chr6 165966073 165966163 -16449079 - L1MC4 LINE L1 -1339 6703 6614 326 258 0 43 chr6 165966089 165966182 -16449060 + L1MC4 LINE L1 6614 6702 -1340 * 282 160 0 0 chr6 165966189 165966239 -16449003 + (TA)n Simple_repeat Simple_repeat 2 51 0 610 234 0 0 chr6 165966251 165966388 -16448854 + FLAM_C SINE Alu 1 137 -6 22 70 0 0 chr6 165966397 165966440 -16448802 + AT_rich Low_complexity Low_complexity 1 43 0 585 316 54 19 chr6 165966482 165966998 -16448244 + L1ME LINE L1 5257 5802 -360 402 21 0 0 chr6 165967108 165967155 -16448087 + (TG)n Simple_repeat Simple_repeat 1 47 0 21 57 0 0 chr6 165967276 165967311 -16447931 + AT_rich Low_complexity Low_complexity 1 35 0 275 291 81 20 chr6 165968913 165969061 -16446181 + MIR3 SINE MIR 47 203 -5 1810 148 167 16 chr6 165969299 165969671 -16445571 + MSTA LTR MaLR 1 428 0 2438 76 0 10 chr6 165969673 165969987 -16445255 + AluY SINE Alu 1 311 0 362 192 119 147 chr6 165970383 165970560 -16444682 + MER21B LTR ERV1 1 172 -691 1191 210 55 29 chr6 165970577 165970886 -16444356 + MER21B LTR ERV1 487 803 -60 793 180 41 57 chr6 165971157 165971351 -16443891 - MER20 DNA MER1_type -4 215 25 675 251 113 126 chr6 165971544 165972410 -16442832 + L1ME3A LINE L1 89 965 -5431 1741 159 7 34 chr6 165972410 165972706 -16442536 - AluJb SINE Alu -24 288 1 675 251 113 126 chr6 165972706 165972726 -16442516 + L1ME3A LINE L1 965 984 -5412 216 0 0 0 chr6 165972726 165972750 -16442492 + (CATA)n Simple_repeat Simple_repeat 1 24 0 675 251 113 126 chr6 165972750 165972828 -16442414 + L1ME3A LINE L1 984 1041 -5355 225 273 26 0 chr6 165973525 165973602 -16441640 - HAL1 LINE L1 -698 1809 1731 459 280 78 21 chr6 165973651 165973894 -16441348 + L1ME3A LINE L1 4929 5185 -1030 686 287 96 41 chr6 165973902 165974656 -16440586 + L1ME3A LINE L1 5219 6018 -221 2537 50 3 0 chr6 165974657 165974957 -16440285 + AluY SINE Alu 1 301 -10 2093 160 6 6 chr6 165975221 165975565 -16439677 - MER2 DNA MER2_type 0 344 1 22 0 0 0 chr6 165975587 165975609 -16439633 + AT_rich Low_complexity Low_complexity 1 22 0 244 278 203 16 chr6 165975628 165975815 -16439427 + HAL1 LINE L1 385 606 -1901 2103 83 0 70 chr6 165975850 165976151 -16439091 - AluSg SINE Alu -30 280 1 244 380 91 0 chr6 165979525 165979646 -16435596 + L2 LINE L2 3182 3313 0 22 0 0 0 chr6 165980350 165980372 -16434870 + AT_rich Low_complexity Low_complexity 1 22 0 2205 115 3 3 chr6 165980392 165980704 -16434538 - AluSx SINE Alu 0 312 1 1937 63 17 7 chr6 165982362 165982636 -16432606 - THE1C LTR MaLR 0 375 1 502 129 35 0 chr6 165982682 165982767 -16432475 + L1MA6 LINE L1 6147 6234 -66 530 332 50 5 chr6 165983369 165983589 -16431653 - MIR SINE MIR -26 236 7 1931 101 0 8 chr6 165983635 165983903 -16431339 + AluSq SINE Alu 39 304 -9 370 265 15 15 chr6 165983995 165984127 -16431115 + L1MEc LINE L1 246 377 -6230 454 278 172 48 chr6 165984127 165984418 -16430824 + L1MEc LINE L1 1355 1681 -4745 1083 193 100 4 chr6 165984426 165984685 -16430557 + L1ME1 LINE L1 4751 5034 -1112 22 0 0 0 chr6 165984685 165984707 -16430535 + AT_rich Low_complexity Low_complexity 1 22 0 547 95 24 39 chr6 165984707 165984965 -16430277 + (TA)n Simple_repeat Simple_repeat 1 254 0 3089 215 19 59 chr6 165985071 165985855 -16429387 + L1ME1 LINE L1 5344 6158 -8 1675 169 3 31 chr6 165985855 165986145 -16429097 + AluJb SINE Alu 3 284 -28 363 78 0 0 chr6 165986145 165986196 -16429046 + (CA)n Simple_repeat Simple_repeat 2 52 0 3089 215 19 59 chr6 165986196 165986262 -16428980 + L1ME1 LINE L1 6156 6161 -5 2194 102 39 36 chr6 165986276 165986639 -16428603 - THE1B LTR MaLR 0 364 1 1039 88 214 6 chr6 165986727 165986909 -16428333 + MER30 DNA MER1_type 11 230 0 500 258 48 0 chr6 165987505 165987629 -16427613 - MIR SINE MIR -132 130 1 738 248 0 34 chr6 165988277 165988483 -16426759 - L2 LINE L2 -15 3298 3100 336 314 68 40 chr6 165989371 165989619 -16425623 - L3 LINE CR1 -152 1425 1171 23 0 0 0 chr6 165989858 165989881 -16425361 + AT_rich Low_complexity Low_complexity 1 23 0 287 260 190 20 chr6 165989980 165990080 -16425162 + MER5A DNA MER1_type 7 123 -66 22 0 0 0 chr6 165990981 165991003 -16424239 + AT_rich Low_complexity Low_complexity 1 22 0 2183 136 3 0 chr6 165991982 165992291 -16422951 + AluSq SINE Alu 3 312 -1 427 206 9 37 chr6 165992564 165992671 -16422571 + L1ME1 LINE L1 6060 6163 -3 302 311 132 21 chr6 165993583 165993773 -16421469 - L1M2 LINE L1 -5744 1105 895 305 220 125 75 chr6 165993956 165994156 -16421086 + MIR SINE MIR 53 262 0 258 328 119 15 chr6 165994672 165994873 -16420369 - MIR SINE MIR -38 224 3 1196 194 30 111 chr6 165995620 165996017 -16419225 - MLT1A1 LTR MaLR 0 365 1 9054 122 37 11 chr6 165997285 165998730 -16416512 - Tigger1 DNA MER2_type -1 2417 936 536 327 106 15 chr6 165998772 165999233 -16416009 + L2 LINE L2 2539 3054 -218 27 0 0 0 chr6 165999310 165999337 -16415905 + AT_rich Low_complexity Low_complexity 1 27 0 469 255 19 62 chr6 165999852 166000013 -16415229 + L2 LINE L2 3160 3313 0 180 377 22 36 chr6 166000225 166000363 -16414879 + L2 LINE L2 2717 2852 -462 275 353 60 0 chr6 166000667 166000783 -16414459 + L2 LINE L2 3140 3262 -10 470 299 0 104 chr6 166000825 166000958 -16414284 + MIR SINE MIR 1 92 -170 2040 202 15 50 chr6 166000958 166001478 -16413764 + MLT1D LTR MaLR 1 502 -3 470 299 0 104 chr6 166001478 166001622 -16413620 + MIR SINE MIR 92 249 -13 208 148 33 16 chr6 166002372 166002433 -16412809 + (CATAT)n Simple_repeat Simple_repeat 3 64 0 2125 131 0 7 chr6 166002731 166003036 -16412206 - AluSx SINE Alu -9 303 1 556 257 72 34 chr6 166003063 166003300 -16411942 + MER112 DNA MER1_type 9 254 -6 3588 187 48 52 chr6 166003719 166004775 -16410467 - MER69 DNA AcHobo -23 2503 1452 855 216 17 6 chr6 166004829 166005005 -16410237 - MER69 DNA AcHobo -2345 181 4 527 243 42 99 chr6 166005112 166005375 -16409867 - LTR16C LTR ERVL -7 484 237 2574 50 0 0 chr6 166005715 166006017 -16409225 - AluY SINE Alu -9 302 1 429 298 101 18 chr6 166006304 166006472 -16408770 + MIR3 SINE MIR 6 187 -21 325 263 74 0 chr6 166006533 166006628 -16408614 + MIR3 SINE MIR 85 186 -22 291 272 79 18 chr6 166008003 166008117 -16407125 - MIR SINE MIR -50 212 92 288 0 0 0 chr6 166008379 166008411 -16406831 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 191 387 179 6 chr6 166008447 166008620 -16406622 - L2 LINE L2 -60 3212 3010 188 257 0 0 chr6 166009013 166009048 -16406194 - MIR SINE MIR -149 113 79 187 268 169 0 chr6 166009059 166009130 -16406112 - L2 LINE L2 -76 3196 3114 595 291 137 26 chr6 166009271 166009887 -16405355 - L2 LINE L2 -257 3056 2364 441 282 69 0 chr6 166010211 166010342 -16404900 + MIR SINE MIR 28 167 -95 398 188 0 0 chr6 166010362 166010426 -16404816 - MER91 DNA MER1_type 0 190 127 262 270 0 0 chr6 166011021 166011084 -16404158 - MER91 DNA MER1_type -61 129 67 1779 131 8 8 chr6 166011365 166011632 -16403610 - AluSq SINE Alu -15 298 32 190 365 84 28 chr6 166012088 166012195 -16403047 + MIR3 SINE MIR 5 117 -91 27 0 0 0 chr6 166012227 166012254 -16402988 + AT_rich Low_complexity Low_complexity 1 27 0 511 265 68 20 chr6 166014395 166014542 -16400700 + MIR SINE MIR 34 187 -75 25 65 0 0 chr6 166015515 166015561 -16399681 + AT_rich Low_complexity Low_complexity 1 46 0 366 42 0 0 chr6 166015905 166015953 -16399289 + (CA)n Simple_repeat Simple_repeat 1 48 0 246 224 0 0 chr6 166016303 166016352 -16398890 + L2 LINE L2 3265 3313 0 212 273 0 18 chr6 166016376 166016431 -16398811 + MIR SINE MIR 22 75 -133 809 219 0 0 chr6 166016970 166017121 -16398121 - FRAM SINE Alu -22 154 4 237 318 11 0 chr6 166017615 166017703 -16397539 + GA-rich Low_complexity Low_complexity 2 90 0 29 0 0 0 chr6 166017983 166018012 -16397230 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr6 166018341 166018364 -16396878 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 207 100 0 0 chr6 166018929 166018959 -16396283 + (CACG)n Simple_repeat Simple_repeat 2 31 0 5182 109 91 129 chr6 166019608 166021138 -16394104 - pTR5 LTR ERV1 -75 2363 740 11196 174 25 31 chr6 166021753 166025155 -16390087 - L1MA7 LINE L1 -11 6484 3108 4677 170 28 26 chr6 166025141 166025412 -16389830 - L1MA4 LINE L1 0 6300 6031 * 1483 196 28 0 chr6 166025412 166025667 -16389575 - AluJo SINE Alu -29 283 22 4677 170 28 26 chr6 166025667 166027311 -16387931 - L1MA4 LINE L1 -269 6031 4390 7524 30 0 0 chr6 166027341 166028343 -16386899 - L1PA4 LINE L1 -2 6153 5151 1625 50 27 0 chr6 166028343 166028563 -16386679 - L1PA4 LINE L1 -1456 4690 4465 3135 257 40 31 chr6 166028777 166030450 -16384792 - L1MA7 LINE L1 -4165 2186 724 262 324 56 0 chr6 166030598 166030777 -16384465 - L1M3a LINE L1 -5226 729 541 644 344 73 26 chr6 166030967 166031394 -16383848 - L1M3a LINE L1 -5508 447 1 2322 115 3 0 chr6 166031769 166032081 -16383161 + AluSp SINE Alu 1 313 0 33 0 0 0 chr6 166032346 166032379 -16382863 + AT_rich Low_complexity Low_complexity 1 33 0 213 222 22 56 chr6 166033117 166033207 -16382035 - L2 LINE L2 -337 2976 2890 16433 148 16 83 chr6 166033234 166037320 -16377922 + L1PA14 LINE L1 11 3824 -3760 2253 128 0 0 chr6 166037320 166037624 -16377618 + AluSq SINE Alu 1 304 -9 5939 175 52 25 chr6 166037625 166039546 -16375696 + L1PA14 LINE L1 5651 7588 -11 346 309 198 14 chr6 166039562 166039850 -16375392 - L2 LINE L2 -470 2844 2504 359 118 94 12 chr6 166040258 166040343 -16374899 + MER103 DNA DNA 34 125 -41 3633 164 27 23 chr6 166041680 166042381 -16372861 - MER44D DNA MER2_type -1 704 1 407 195 0 12 chr6 166042472 166042554 -16372688 + MER94 DNA DNA 54 134 0 1858 243 34 21 chr6 166043053 166043693 -16371549 + L1PB1 LINE L1 558 1198 -4130 2188 100 11 0 chr6 166043693 166043974 -16371268 + AluSp SINE Alu 14 297 -16 13327 190 30 8 chr6 166043980 166045838 -16369404 + L1PB1 LINE L1 1851 3666 -2667 2390 81 0 0 chr6 166045838 166046133 -16369109 - AluY SINE Alu -16 295 1 13327 190 30 8 chr6 166046133 166048688 -16366554 + L1PB1 LINE L1 3666 6332 -1 183 390 24 0 chr6 166048971 166049053 -16366189 + MIR3 SINE MIR 71 154 -54 749 251 87 5 chr6 166049063 166049270 -16365972 + MER58A DNA MER1_type 1 224 0 1939 118 30 0 chr6 166049334 166049605 -16365637 + AluSx SINE Alu 1 279 -33 216 0 0 0 chr6 166050748 166050772 -16364470 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 325 171 29 14 chr6 166050772 166050842 -16364400 - FRAM SINE Alu -20 146 76 244 330 56 0 chr6 166051116 166051295 -16363947 - L1M3a LINE L1 -5226 729 541 791 354 31 25 chr6 166051485 166051929 -16363313 - L1M3a LINE L1 -5508 447 1 2357 109 3 0 chr6 166052304 166052647 -16362595 + AluSp SINE Alu 1 344 0 33 0 0 0 chr6 166052883 166052916 -16362326 + AT_rich Low_complexity Low_complexity 1 33 0 213 222 22 56 chr6 166053655 166053745 -16361497 - L2 LINE L2 -337 2976 2890 16565 147 16 83 chr6 166053772 166057859 -16357383 + L1PA14 LINE L1 11 3824 -3760 2261 128 0 0 chr6 166057859 166058164 -16357078 + AluSq SINE Alu 1 305 -8 5967 174 50 25 chr6 166058165 166060087 -16355155 + L1PA14 LINE L1 5651 7588 -11 325 313 198 14 chr6 166060103 166060391 -16354851 - L2 LINE L2 -470 2844 2504 359 118 94 12 chr6 166060801 166060886 -16354356 + MER103 DNA DNA 34 125 -41 3517 164 34 29 chr6 166062454 166063154 -16352088 - MER44D DNA MER2_type -1 704 1 316 209 0 45 chr6 166064394 166064461 -16350781 + L2 LINE L2 3209 3272 0 257 109 22 0 chr6 166064523 166064569 -16350673 + CT-rich Low_complexity Low_complexity 2 48 0 647 209 0 9 chr6 166064606 166064721 -16350521 - L2 LINE L2 0 3272 3159 21 0 0 0 chr6 166065711 166065732 -16349510 + AT_rich Low_complexity Low_complexity 1 21 0 455 193 50 0 chr6 166065826 166065945 -16349297 + L1ME4a LINE L1 5990 6114 -7 1008 180 81 5 chr6 166067263 166067474 -16347768 - MER58 DNA MER1_type -2192 228 2 1645 85 31 0 chr6 166067566 166067789 -16347453 - MER30 DNA MER1_type 0 230 1 195 383 120 11 chr6 166068717 166068892 -16346350 + MIR3 SINE MIR 10 203 -5 1098 204 186 24 chr6 166068996 166069334 -16345908 + MSTD LTR MaLR 1 393 -3 1236 115 78 5 chr6 166069540 166069758 -16345484 + MER46A DNA MER2_type 3 236 0 1386 152 35 17 chr6 166070715 166071004 -16344238 + L1MB3 LINE L1 5888 6181 -2 815 177 0 0 chr6 166071476 166071600 -16343642 + FLAM_C SINE Alu 1 124 -19 272 274 14 0 chr6 166072566 166072639 -16342603 - MIR SINE MIR -1 261 188 443 247 36 113 chr6 166072770 166073231 -16342011 - L1MC4 LINE L1 -151 7891 7357 252 302 41 30 chr6 166073235 166073404 -16341838 - L1MC4a LINE L1 -388 7420 7250 2433 61 3 0 chr6 166074362 166074657 -16340585 - AluY SINE Alu -11 300 5 715 186 14 0 chr6 166074749 166074889 -16340353 + FRAM SINE Alu 5 146 -30 213 318 16 0 chr6 166074896 166074959 -16340283 + (CA)n Simple_repeat Simple_repeat 1 64 0 195 269 160 17 chr6 166075062 166075181 -16340061 + L2 LINE L2 3165 3300 -13 25 0 0 0 chr6 166076062 166076087 -16339155 + AT_rich Low_complexity Low_complexity 1 25 0 753 234 55 0 chr6 166077754 166077955 -16337287 + MER58C DNA MER1_type 3 214 -1 238 303 9 28 chr6 166077994 166078103 -16337139 - L1M4 LINE L1 -1488 4658 4552 1737 209 24 79 chr6 166078128 166078660 -16336582 - MLT1D LTR MaLR 0 505 3 1774 201 24 7 chr6 166078662 166079115 -16336127 - L1MDb LINE L1 -5175 1234 774 37 52 0 0 chr6 166079762 166079820 -16335422 + AT_rich Low_complexity Low_complexity 1 58 0 1430 268 141 31 chr6 166080323 166080934 -16334308 - L2 LINE L2 -813 2501 1824 198 103 0 0 chr6 166080968 166080997 -16334245 + (CA)n Simple_repeat Simple_repeat 2 30 0 1942 166 20 20 chr6 166081565 166081969 -16333273 + L1MB8 LINE L1 5655 6058 -120 1992 101 3 31 chr6 166081973 166082260 -16332982 + AluSx SINE Alu 14 292 -20 2753 165 56 2 chr6 166082265 166082817 -16332425 + L1MA4 LINE L1 5713 6294 -6 615 165 0 8 chr6 166082817 166082937 -16332305 + L1MB8 LINE L1 6046 6171 -7 858 221 35 69 chr6 166083380 166083728 -16331514 + MER46C DNA MER2_type 1 336 -2 881 268 132 24 chr6 166083759 166083952 -16331290 + HAL1b LINE L1 68 239 -1109 2003 106 29 0 chr6 166083952 166084227 -16331015 + AluY SINE Alu 26 308 -3 881 268 132 24 chr6 166084227 166084615 -16330627 + HAL1b LINE L1 239 712 -636 2625 38 0 3 chr6 166084783 166085133 -16330109 - L1PA5 LINE L1 0 6154 5835 390 304 34 34 chr6 166085331 166085578 -16329664 - L1MCa LINE L1 -861 1926 1440 259 145 0 32 chr6 166085617 166085679 -16329563 + (TTTTC)n Simple_repeat Simple_repeat 4 63 0 362 310 74 43 chr6 166085680 166086073 -16329169 - L1M4 LINE L1 -1444 4702 4298 24 0 0 0 chr6 166086291 166086315 -16328927 + AT_rich Low_complexity Low_complexity 1 24 0 230 150 0 50 chr6 166087265 166087325 -16327917 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 536 350 24 24 chr6 166087414 166087743 -16327499 + L3b LINE CR1 1102 1430 -153 1036 256 95 16 chr6 166087823 166088139 -16327103 + MER58B DNA MER1_type 1 341 0 485 238 0 0 chr6 166088614 166088715 -16326527 + MER58B DNA MER1_type 241 341 0 457 241 130 0 chr6 166088804 166088912 -16326330 + L2 LINE L2 3190 3311 -2 265 270 151 8 chr6 166088918 166089044 -16326198 + MIR SINE MIR 63 206 -56 326 298 10 19 chr6 166089519 166089623 -16325619 - MER5A DNA MER1_type -5 184 82 540 308 5 5 chr6 166090091 166090276 -16324966 + MIR SINE MIR 59 243 -19 210 354 80 26 chr6 166092227 166092340 -16322902 - L2 LINE L2 -29 3243 3125 260 53 26 0 chr6 166095270 166095308 -16319934 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr6 166095464 166095492 -16319750 + AT_rich Low_complexity Low_complexity 1 28 0 1181 249 265 26 chr6 166096754 166097466 -16317776 + L2 LINE L2 2137 3028 -285 294 250 137 95 chr6 166097622 166097790 -16317452 - MIR SINE MIR -86 176 2 267 157 0 0 chr6 166097801 166097852 -16317390 + (TAA)n Simple_repeat Simple_repeat 3 53 0 624 274 61 70 chr6 166097881 166098110 -16317132 - MIR SINE MIR -28 234 12 2053 128 0 34 chr6 166099319 166099640 -16315602 - AluY SINE Alu -1 310 1 2292 182 51 2 chr6 166099989 166100456 -16314786 + L1PB4 LINE L1 5667 6156 0 276 149 0 0 chr6 166101651 166101698 -16313544 + (TG)n Simple_repeat Simple_repeat 1 47 0 590 254 38 43 chr6 166104116 166104325 -16310917 - L2 LINE L2 -1 3312 3105 327 256 22 11 chr6 166104385 166104475 -16310767 + L2 LINE L2 3221 3311 -2 460 262 118 17 chr6 166104515 166104931 -16310311 - L2 LINE L2 -269 3044 2596 188 341 12 35 chr6 166104962 166105047 -16310195 - L3b LINE CR1 -212 1371 1289 21 0 0 0 chr6 166105917 166105938 -16309304 + AT_rich Low_complexity Low_complexity 1 21 0 2306 109 3 3 chr6 166105970 166106282 -16308960 - AluSx SINE Alu 0 312 1 447 263 56 45 chr6 166107020 166107199 -16308043 + MIR SINE MIR 82 262 0 2355 107 0 0 chr6 166108096 166108405 -16306837 - AluSx SINE Alu -3 309 1 315 313 28 35 chr6 166108416 166108560 -16306682 + L1MC4a LINE L1 5750 5892 -1916 191 342 66 72 chr6 166110685 166110837 -16304405 + MIR3 SINE MIR 20 170 -38 204 200 18 18 chr6 166111351 166111406 -16303836 + (TA)n Simple_repeat Simple_repeat 1 55 0 247 310 239 7 chr6 166111851 166112006 -16303236 + MIR SINE MIR 1 191 -71 380 308 83 0 chr6 166112039 166112172 -16303070 + MIR SINE MIR 117 260 -2 217 282 47 0 chr6 166112285 166112370 -16302872 - MIR SINE MIR -70 192 104 481 303 26 20 chr6 166112539 166112691 -16302551 + MIR SINE MIR 36 188 -74 575 88 38 0 chr6 166112928 166113008 -16302234 - AluJ SINE Alu -22 290 208 * 729 159 7 43 chr6 166113007 166113145 -16302097 - AluJ SINE Alu -175 137 5 193 182 45 0 chr6 166113312 166113356 -16301886 - MIR SINE MIR -116 146 101 2288 107 0 7 chr6 166115086 166115394 -16299848 - AluSc SINE Alu -2 307 2 332 336 107 39 chr6 166115449 166115729 -16299513 + L2 LINE L2 3011 3309 -4 564 335 172 3 chr6 166116315 166116646 -16298596 - L3 LINE CR1 -2 1575 1189 588 224 157 24 chr6 166116935 166117157 -16298085 - MIR SINE MIR 0 262 18 1206 263 58 32 chr6 166117623 166118091 -16297151 - L2 LINE L2 -19 3294 2815 405 0 0 0 chr6 166118339 166118384 -16296858 + (TG)n Simple_repeat Simple_repeat 1 45 0 332 268 62 0 chr6 166118811 166118923 -16296319 - L2 LINE L2 0 3313 3195 2193 103 0 0 chr6 166119261 166119542 -16295700 - AluSx SINE Alu -18 294 14 835 131 57 34 chr6 166119564 166119740 -16295502 + MLT1C LTR MaLR 1 180 -287 222 37 0 0 chr6 166119933 166119960 -16295282 + (T)n Simple_repeat Simple_repeat 1 27 0 321 47 0 0 chr6 166122760 166122803 -16292439 + (CA)n Simple_repeat Simple_repeat 2 44 0 405 323 38 13 chr6 166123087 166123245 -16291997 - MIR SINE MIR -86 176 15 947 118 0 7 chr6 166123428 166123581 -16291661 - L1MA5A LINE L1 -5 6292 6141 279 374 35 20 chr6 166124759 166124957 -16290285 + MIR3 SINE MIR 3 203 -5 397 331 18 18 chr6 166125067 166125230 -16290012 + MIR3 SINE MIR 15 177 -31 362 353 50 15 chr6 166130342 166130548 -16284694 + MIR SINE MIR 18 221 -41 206 241 134 45 chr6 166130795 166130907 -16284335 - MIR3 SINE MIR -72 136 15 221 163 0 0 chr6 166131494 166131537 -16283705 + A-rich Low_complexity Low_complexity 1 43 0 929 192 11 0 chr6 166131843 166132020 -16283222 + AluJb SINE Alu 129 307 -5 198 71 0 0 chr6 166132024 166132052 -16283190 + (A)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr6 166133088 166133117 -16282125 + AT_rich Low_complexity Low_complexity 1 29 0 2463 81 0 0 chr6 166133337 166133647 -16281595 + AluY SINE Alu 1 310 -1 21 36 0 0 chr6 166134326 166134354 -16280888 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 166134392 166134413 -16280829 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 166134976 166135004 -16280238 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 166135206 166135234 -16280008 + AT_rich Low_complexity Low_complexity 1 28 0 4401 134 56 3 chr6 166135509 166136204 -16279038 + MER44D DNA MER2_type 1 604 -1 677 55 34 34 chr6 166137218 166137364 -16277878 + (TA)n Simple_repeat Simple_repeat 2 147 0 312 290 188 0 chr6 166137753 166137891 -16277351 - MIR SINE MIR -4 258 95 2102 111 31 0 chr6 166138403 166138691 -16276551 - AluSx SINE Alu -15 297 1 326 261 0 43 chr6 166139468 166139560 -16275682 + MIR3 SINE MIR 99 186 -22 180 0 0 0 chr6 166139996 166140016 -16275226 + (A)n Simple_repeat Simple_repeat 1 20 0 2273 112 0 0 chr6 166142337 166142633 -16272609 - AluSq SINE Alu -17 296 1 1967 159 0 9 chr6 166142967 166143282 -16271960 - AluJo SINE Alu 0 312 1 366 376 12 12 chr6 166143467 166143629 -16271613 - L3 LINE CR1 -72 1505 1344 202 333 83 0 chr6 166143648 166143744 -16271498 - L2 LINE L2 0 3272 3169 1372 106 14 0 chr6 166145253 166145460 -16269782 - Tigger1 DNA MER2_type 0 2418 2209 845 172 6 6 chr6 166145448 166145611 -16269631 - Tigger1 DNA MER2_type -2255 163 1 * 2172 127 0 13 chr6 166147563 166147879 -16267363 - AluSx SINE Alu 0 312 1 337 317 139 20 chr6 166148417 166148619 -16266623 - MIR SINE MIR -36 226 1 1444 234 24 38 chr6 166148809 166149233 -16266009 + MER74B LTR ERVL 55 472 -150 220 221 59 29 chr6 166149288 166149356 -16265886 + MIR SINE MIR 107 176 -86 2394 66 0 23 chr6 166149903 166150204 -16265038 + AluSg SINE Alu 1 294 -16 33 25 0 0 chr6 166151768 166151808 -16263434 + AT_rich Low_complexity Low_complexity 1 40 0 375 317 37 6 chr6 166154036 166154197 -16261045 - MIR3 SINE MIR -6 202 37 333 337 63 21 chr6 166154410 166154600 -16260642 - MIR SINE MIR -45 217 20 185 81 0 27 chr6 166155096 166155133 -16260109 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 5316 131 18 11 chr6 166155400 166156130 -16259112 - L1PA15 LINE L1 -2 6163 5424 1878 179 40 3 chr6 166156130 166156454 -16258788 - MER1B DNA MER1_type -1 336 1 5316 131 18 11 chr6 166156454 166156672 -16258570 - L1PA15 LINE L1 -741 5424 5209 252 169 136 0 chr6 166157753 166157812 -16257430 - L2 LINE L2 0 3272 3206 1778 201 48 23 chr6 166158257 166158284 -16256958 - MLT2C2 LTR ERVL -13 451 426 231 61 0 0 chr6 166158284 166158317 -16256925 + (CA)n Simple_repeat Simple_repeat 2 34 0 1778 201 48 23 chr6 166158317 166158580 -16256662 - MLT2C2 LTR ERVL -38 426 171 2683 93 3 3 chr6 166158580 166158935 -16256307 - THE1A LTR MaLR 0 355 1 11316 105 4 3 chr6 166158935 166160514 -16254728 - THE1A-int LTR MaLR 0 1580 1 2723 90 3 0 chr6 166160514 166160868 -16254374 - THE1A LTR MaLR 0 355 1 1778 201 48 23 chr6 166160868 166161011 -16254231 - MLT2C2 LTR ERVL -292 172 4 203 262 49 104 chr6 166161194 166161358 -16253884 - L2 LINE L2 -273 2999 2845 1131 215 66 75 chr6 166161382 166161851 -16253391 - MLT1C LTR MaLR -2 465 1 363 259 116 37 chr6 166161908 166162124 -16253118 - MER102b DNA MER1_type -25 316 84 2568 113 6 3 chr6 166162403 166162766 -16252476 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr6 166163383 166163404 -16251838 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 166164082 166164103 -16251139 + AT_rich Low_complexity Low_complexity 1 21 0 312 388 0 7 chr6 166164797 166164949 -16250293 + L1MC4a LINE L1 6428 6578 -1230 23 0 0 0 chr6 166164962 166164985 -16250257 + AT_rich Low_complexity Low_complexity 1 23 0 1174 61 6 24 chr6 166164995 166165159 -16250083 - L1PA10 LINE L1 -5 6163 6003 2221 245 47 75 chr6 166165167 166166469 -16248773 + L1MC5 LINE L1 6625 7890 -71 825 296 84 54 chr6 166166926 166167105 -16248137 + L1ME LINE L1 3643 3815 -2349 2555 89 0 6 chr6 166167105 166167454 -16247788 + L1PA10 LINE L1 5805 6151 -17 825 296 84 54 chr6 166167454 166168022 -16247220 + L1ME LINE L1 3815 4364 -1800 652 207 0 22 chr6 166168022 166168157 -16247085 + FLAM_C SINE Alu 1 132 -1 825 296 84 54 chr6 166168157 166169490 -16245752 + L1ME LINE L1 4364 5771 -393 961 204 0 0 chr6 166169567 166169734 -16245508 - AluSg/x SINE Alu -16 294 128 1556 139 139 32 chr6 166170745 166171084 -16244158 + THE1C LTR MaLR 1 375 0 379 301 51 34 chr6 166171737 166171913 -16243329 + MIR SINE MIR 6 184 -78 2220 194 61 48 chr6 166172001 166172559 -16242683 + MER34B LTR ERV1 1 565 0 445 292 35 35 chr6 166172644 166172815 -16242427 + MER5B DNA MER1_type 7 177 -1 361 333 214 15 chr6 166172907 166173304 -16241938 + L2 LINE L2 1764 2239 -1075 194 298 18 0 chr6 166173357 166173414 -16241828 + L2 LINE L2 2219 2276 -1038 471 171 8 94 chr6 166173736 166173853 -16241389 + MER34C LTR ERV1 37 143 -442 321 202 33 70 chr6 166173854 166173976 -16241266 + MER34 LTR ERV1 444 540 -2 554 269 18 12 chr6 166173984 166174155 -16241087 - MIR SINE MIR -27 235 64 291 308 159 53 chr6 166174748 166174822 -16240420 + MIR SINE MIR 10 75 -187 1723 207 25 19 chr6 166174822 166175185 -16240057 + MLT1A1 LTR MaLR 1 365 0 291 308 159 53 chr6 166175185 166175337 -16239905 + MIR SINE MIR 75 260 -2 23 0 0 0 chr6 166175591 166175614 -16239628 + AT_rich Low_complexity Low_complexity 1 23 0 285 335 45 84 chr6 166175920 166176099 -16239143 - L2 LINE L2 -5 3267 3096 602 302 62 29 chr6 166177426 166177668 -16237574 + MIR SINE MIR 10 259 -3 342 324 100 12 chr6 166178212 166178382 -16236860 + MIR3 SINE MIR 13 197 -11 1690 151 4 7 chr6 166179530 166179802 -16235440 - AluJb SINE Alu -24 288 18 408 159 0 0 chr6 166179802 166179865 -16235377 - AluS SINE Alu -238 63 1 21 71 0 0 chr6 166180340 166180382 -16234860 + AT_rich Low_complexity Low_complexity 1 42 0 230 276 0 0 chr6 166181162 166181220 -16234022 + (TA)n Simple_repeat Simple_repeat 2 59 0 606 262 18 49 chr6 166181282 166181487 -16233755 + MIR SINE MIR 54 252 -10 360 337 42 36 chr6 166181663 166181829 -16233413 + MIR3 SINE MIR 6 172 -36 207 353 25 17 chr6 166181893 166182012 -16233230 + L2 LINE L2 3191 3310 -3 200 327 18 0 chr6 166183881 166183936 -16231306 - L2 LINE L2 -8 3264 3209 2283 114 36 20 chr6 166184369 166184727 -16230515 + THE1B LTR MaLR 1 364 0 329 333 101 27 chr6 166185794 166186091 -16229151 + L3 LINE CR1 1245 1563 -14 319 318 28 78 chr6 166187087 166187266 -16227976 + MIR SINE MIR 35 204 -58 1662 168 103 14 chr6 166187667 166188025 -16227217 + MLT1B LTR MaLR 1 390 0 356 261 0 43 chr6 166188335 166188427 -16226815 - AluJo SINE Alu -121 181 94 1218 158 58 58 chr6 166188429 166188689 -16226553 + AluJo SINE Alu 50 309 -3 1769 200 79 110 chr6 166189555 166190012 -16225230 - MLT1E2 LTR MaLR -3 623 190 2025 139 0 0 chr6 166190012 166190299 -16224943 - AluSx SINE Alu -25 287 1 1769 200 79 110 chr6 166190299 166190477 -16224765 - MLT1E2 LTR MaLR -436 190 8 1887 232 33 33 chr6 166191160 166191678 -16223564 - LTR40a LTR ERVL 0 519 2 424 256 25 0 chr6 166192135 166192256 -16222986 - MER103 DNA DNA -42 124 1 297 0 0 0 chr6 166192263 166192296 -16222946 + (TG)n Simple_repeat Simple_repeat 2 34 0 2613 219 89 23 chr6 166192937 166193360 -16221882 - L1ME1 LINE L1 -4 6556 6163 2983 34 0 0 chr6 166193360 166193717 -16221525 + L1PA3 LINE L1 5799 6155 0 2613 219 89 23 chr6 166193717 166194349 -16220893 - L1ME1 LINE L1 -397 6163 5436 502 237 11 104 chr6 166194341 166194483 -16220759 - L1ME1 LINE L1 -3752 2808 2654 * 2090 134 3 0 chr6 166194483 166194790 -16220452 - AluSx SINE Alu -4 308 1 502 237 11 104 chr6 166194790 166195023 -16220219 - L1ME1 LINE L1 -3906 2654 2443 718 298 62 39 chr6 166195057 166195284 -16219958 - L1ME1 LINE L1 -5921 800 559 2285 98 0 3 chr6 166195284 166195580 -16219662 + AluSc SINE Alu 1 295 -14 718 298 62 39 chr6 166195580 166195738 -16219504 - L1ME1 LINE L1 -6162 559 406 186 322 56 11 chr6 166197297 166197387 -16217855 - L2 LINE L2 -31 3282 3189 1387 210 0 25 chr6 166198368 166198682 -16216560 - AluJo SINE Alu 0 309 3 2222 114 0 0 chr6 166198775 166199074 -16216168 + AluSg1 SINE Alu 1 299 -10 2273 94 3 3 chr6 166200738 166201035 -16214207 - AluSp SINE Alu -16 297 1 387 182 81 20 chr6 166201195 166201294 -16213948 - MIR3 SINE MIR -35 173 69 30 59 0 0 chr6 166202610 166202661 -16212581 + AT_rich Low_complexity Low_complexity 1 51 0 238 280 42 42 chr6 166203388 166203556 -16211686 - L1MC4a LINE L1 -1873 5935 5768 271 239 15 0 chr6 166203596 166203663 -16211579 - L1MC4a LINE L1 -2023 5785 5718 883 62 0 0 chr6 166203663 166203776 -16211466 - AluY SINE Alu -9 302 190 452 171 0 0 chr6 166203776 166203852 -16211390 - AluJ/FLAM SINE Alu -236 76 1 2564 219 31 9 chr6 166204151 166204787 -16210455 - L1MD1 LINE L1 0 6242 5593 893 214 29 0 chr6 166204807 166205013 -16210229 - L1MC/D LINE L1 -438 6064 5853 747 255 34 44 chr6 166205009 166205303 -16209939 - L1MC/D LINE L1 -1037 5369 5079 * 3591 232 50 100 chr6 166205306 166205917 -16209325 - L1MDb LINE L1 -2163 4243 3603 2224 149 134 5 chr6 166205917 166206334 -16208908 - MER101 LTR ERV1 -1 473 3 3591 232 50 100 chr6 166206334 166206858 -16208384 - L1MDb LINE L1 -2803 3603 3054 1742 186 0 7 chr6 166206858 166207164 -16208078 - AluJb SINE Alu -3 309 6 3591 232 50 100 chr6 166207164 166207176 -16208066 - L1MDb LINE L1 -3352 3054 3043 751 167 0 0 chr6 166207176 166207290 -16207952 - FLAM_A SINE Alu -16 126 13 3591 232 50 100 chr6 166207290 166208085 -16207157 - L1MDb LINE L1 -3363 3043 2327 237 235 45 91 chr6 166208262 166208394 -16206848 + MER41E LTR ERV1 166 291 -221 1733 257 33 12 chr6 166208503 166208985 -16206257 + MER41E LTR ERV1 21 512 0 864 206 168 48 chr6 166208995 166209298 -16205944 - L1MDb LINE L1 -4153 2253 1895 2209 95 17 7 chr6 166209298 166209593 -16205649 + AluSx SINE Alu 1 298 -14 864 206 168 48 chr6 166209593 166209663 -16205579 - L1MDb LINE L1 -4511 1895 1835 * 1263 244 96 65 chr6 166209655 166210274 -16204968 - L1MDb LINE L1 -5650 759 3 241 269 15 15 chr6 166210761 166210828 -16204414 + L2 LINE L2 3199 3265 -7 643 305 75 9 chr6 166210900 166211113 -16204129 - L3b LINE CR1 -24 1559 1333 641 286 119 42 chr6 166211373 166211775 -16203467 + MLT1H LTR MaLR 107 539 -10 306 0 0 0 chr6 166212378 166212412 -16202830 + (CA)n Simple_repeat Simple_repeat 1 34 0 1713 186 54 23 chr6 166212516 166212865 -16202377 + MLT1A1 LTR MaLR 6 365 0 2444 136 44 0 chr6 166213868 166214274 -16200968 - MSTA LTR MaLR -1 427 4 280 357 48 18 chr6 166214326 166214598 -16200644 + L2 LINE L2 1899 2178 -1136 468 214 100 29 chr6 166215907 166215974 -16199268 + MER5A DNA MER1_type 9 70 -119 1938 117 0 7 chr6 166215974 166216247 -16198995 + AluSg SINE Alu 1 271 -39 468 214 100 29 chr6 166216247 166216319 -16198923 + MER5A DNA MER1_type 70 158 -31 324 292 0 0 chr6 166217344 166217433 -16197809 - L2 LINE L2 -4 3309 3221 421 274 11 0 chr6 166217488 166217583 -16197659 - L2 LINE L2 -557 2757 2662 490 274 73 21 chr6 166217991 166218204 -16197038 - MIR SINE MIR -6 256 34 2631 194 141 3 chr6 166218469 166219093 -16196149 + L1MB1 LINE L1 5459 6168 0 24 0 0 0 chr6 166219692 166219716 -16195526 + AT_rich Low_complexity Low_complexity 1 24 0 222 372 0 0 chr6 166220381 166220459 -16194783 - MIR3 SINE MIR -23 185 108 892 151 9 84 chr6 166220972 166221104 -16194138 + MER3 DNA MER1_type 2 142 -67 203 32 65 0 chr6 166221104 166221135 -16194107 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2014 113 3 17 chr6 166221145 166221437 -16193805 - AluSx SINE Alu -24 288 1 892 151 9 84 chr6 166221437 166221518 -16193724 + MER3 DNA MER1_type 151 209 0 360 0 0 0 chr6 166222284 166222324 -16192918 + (CA)n Simple_repeat Simple_repeat 2 41 0 1374 289 106 39 chr6 166223714 166224490 -16190752 + L1MEd LINE L1 6 833 -5286 896 254 101 45 chr6 166224529 166225100 -16190142 + L1MEd LINE L1 905 1629 -861 2424 75 0 0 chr6 166225149 166225457 -16189785 + AluY SINE Alu 1 308 -3 24 0 0 0 chr6 166225457 166225481 -16189761 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 166225784 166225814 -16189428 + AT_rich Low_complexity Low_complexity 1 30 0 570 268 49 98 chr6 166226407 166227033 -16188209 - L1MC5 LINE L1 -733 7228 6670 540 345 155 9 chr6 166227174 166227837 -16187405 + L1MEd LINE L1 2123 2882 -3247 270 0 0 0 chr6 166228940 166228970 -16186272 + (CA)n Simple_repeat Simple_repeat 2 31 0 25 0 0 0 chr6 166230656 166230681 -16184561 + AT_rich Low_complexity Low_complexity 1 25 0 2248 168 29 7 chr6 166232274 166232691 -16182551 + MSTB LTR MaLR 1 426 0 329 259 191 32 chr6 166232955 166233144 -16182098 + MIR SINE MIR 1 219 -43 207 69 0 0 chr6 166234101 166234130 -16181112 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr6 166234326 166234347 -16180895 + AT_rich Low_complexity Low_complexity 1 21 0 329 282 99 14 chr6 166235245 166235387 -16179855 - MIR SINE MIR -51 211 58 378 261 0 42 chr6 166235860 166235979 -16179263 - LTR41 LTR ERVL -6 767 654 643 248 48 14 chr6 166236427 166236637 -16178605 - LTR41 LTR ERVL -556 217 1 387 231 55 0 chr6 166236828 166236919 -16178323 + L2 LINE L2 3218 3313 0 182 339 189 0 chr6 166237722 166237849 -16177393 + MIR SINE MIR 36 186 -76 1824 145 0 14 chr6 166238350 166238662 -16176580 - AluJo SINE Alu 0 308 1 396 305 145 55 chr6 166239017 166239528 -16175714 + L2 LINE L2 2174 2730 -584 1467 236 99 42 chr6 166241015 166241616 -16173626 + MLT1E2 LTR MaLR 1 626 0 268 264 60 36 chr6 166242604 166242771 -16172471 + LTR67 LTR ERVL 351 521 -36 231 266 16 31 chr6 166242852 166242916 -16172326 + MIR SINE MIR 23 85 -123 204 67 0 0 chr6 166242937 166242967 -16172275 + (A)n Simple_repeat Simple_repeat 1 30 0 25 83 0 0 chr6 166243332 166243392 -16171850 + AT_rich Low_complexity Low_complexity 1 60 0 1161 225 104 71 chr6 166244565 166245182 -16170060 - L1MC5 LINE L1 -48 7913 7277 1080 211 77 105 chr6 166245246 166245773 -16169469 - L1MC5 LINE L1 -870 7091 6565 285 303 37 48 chr6 166245921 166246109 -16169133 - HAL1b LINE L1 -938 410 225 242 206 0 32 chr6 166247533 166247596 -16167646 - L1MEd LINE L1 -3144 2985 2925 23 33 0 0 chr6 166247649 166247679 -16167563 + AT_rich Low_complexity Low_complexity 1 30 0 284 312 65 52 chr6 166247696 166248308 -16166934 - L1MEd LINE L1 -3380 2749 2130 746 282 83 51 chr6 166248614 166249224 -16166018 - L1MEd LINE L1 -825 1665 937 1817 231 19 30 chr6 166249641 166250069 -16165173 - LTR40a LTR ERVL -96 423 1 273 238 109 41 chr6 166250103 166250250 -16164992 - L1M4 LINE L1 -1896 4250 4094 1608 264 142 32 chr6 166250768 166251690 -16163552 - HAL1 LINE L1 0 2507 1485 624 267 71 25 chr6 166251720 166251960 -16163282 - L1ME3 LINE L1 -7 6155 5905 27 62 0 0 chr6 166252356 166252404 -16162838 + AT_rich Low_complexity Low_complexity 1 48 0 23 54 0 0 chr6 166252915 166252952 -16162290 + AT_rich Low_complexity Low_complexity 1 37 0 645 171 46 20 chr6 166253007 166253159 -16162083 - L1MA10 LINE L1 -10 6324 6169 2151 203 101 50 chr6 166253208 166254371 -16160871 - L1ME1 LINE L1 -224 5942 4735 451 175 19 97 chr6 166254380 166254483 -16160759 - L1MC1 LINE L1 -15 6318 6224 1907 162 60 20 chr6 166254483 166254678 -16160564 + MLT1A1 LTR MaLR 1 218 -147 2130 118 48 22 chr6 166254678 166255033 -16160209 - THE1B LTR MaLR 0 364 1 1907 162 60 20 chr6 166255033 166255188 -16160054 + MLT1A1 LTR MaLR 218 365 0 1636 169 96 0 chr6 166255190 166255504 -16159738 - L1MC1 LINE L1 -107 6226 5883 1115 219 108 45 chr6 166255505 166255849 -16159393 + MLT1A1 LTR MaLR 1 426 0 1769 114 4 4 chr6 166255852 166256116 -16159126 - L1MC1 LINE L1 -450 5883 5620 697 237 65 18 chr6 166306116 166306394 -16108848 + L1ME3 LINE L1 5799 6089 -73 676 207 78 17 chr6 166306472 166306704 -16108538 - L1ME3 LINE L1 -247 5915 5670 278 243 14 0 chr6 166306856 166306926 -16108316 + (TA)n Simple_repeat Simple_repeat 2 72 0 285 321 83 20 chr6 166306951 166307220 -16108022 - L1M4 LINE L1 -3317 2829 2526 2251 119 0 0 chr6 166307220 166307522 -16107720 + AluSq SINE Alu 1 302 -11 285 321 83 20 chr6 166307522 166307647 -16107595 - L1M4 LINE L1 -3620 2526 2410 331 255 85 0 chr6 166307655 166307761 -16107481 + MIR SINE MIR 111 225 -37 424 234 51 17 chr6 166307793 166307968 -16107274 - L1M4 LINE L1 -3752 2394 2214 282 221 26 13 chr6 166308540 166308617 -16106625 + CT-rich Low_complexity Low_complexity 3 80 0 1557 202 32 12 chr6 166308657 166309058 -16106184 + LTR37A LTR ERV1 18 426 0 547 145 25 27 chr6 166310308 166310441 -16104801 + MSTD LTR MaLR 1 136 -229 2395 112 31 11 chr6 166311734 166312091 -16103151 - THE1B LTR MaLR 0 364 1 215 164 15 52 chr6 166312235 166312369 -16102873 + A-rich Low_complexity Low_complexity 3 131 0 855 227 11 0 chr6 166312615 166312791 -16102451 - MER45A DNA AcHobo 0 178 1 693 87 10 10 chr6 166313089 166313193 -16102049 + THE1B LTR MaLR 1 104 -260 2128 104 0 0 chr6 166313581 166313907 -16101335 + AluSc SINE Alu 1 326 0 321 89 0 0 chr6 166314608 166314653 -16100589 + (CCTG)n Simple_repeat Simple_repeat 2 46 0 238 324 147 29 chr6 166314696 166314900 -16100342 - L2 LINE L2 -509 2805 2578 1549 134 62 0 chr6 166315897 166316189 -16099053 - MER45B DNA AcHobo -31 1009 700 * 1715 217 96 5 chr6 166316187 166316634 -16098608 - MER45B DNA AcHobo -545 495 8 197 336 29 19 chr6 166317083 166317187 -16098055 - L2 LINE L2 -9 3263 3159 568 100 0 20 chr6 166317356 166317456 -16097786 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 24 0 0 0 chr6 166318637 166318661 -16096581 + AT_rich Low_complexity Low_complexity 1 24 0 250 303 223 19 chr6 166318942 166319153 -16096089 + MIR SINE MIR 8 261 -1 23 33 0 0 chr6 166320163 166320193 -16095049 + AT_rich Low_complexity Low_complexity 1 30 0 2134 131 3 0 chr6 166320234 166320540 -16094702 - AluSg SINE Alu -3 307 1 2155 108 3 17 chr6 166320638 166320934 -16094308 + AluSc SINE Alu 1 292 -17 339 179 39 0 chr6 166324934 166325012 -16090230 - MLT2D LTR ERVL -333 81 1 210 214 175 71 chr6 166325718 166325844 -16089398 + MIR SINE MIR 121 259 -3 371 56 19 0 chr6 166325992 166326046 -16089196 - MLT2A2 LTR ERVL 0 453 399 248 240 0 0 chr6 166326046 166326096 -16089146 + (CATA)n Simple_repeat Simple_repeat 3 52 0 * 663 347 48 3 chr6 166326053 166326392 -16088850 + (TA)n Simple_repeat Simple_repeat 1 354 0 783 297 30 4 chr6 166326392 166326624 -16088618 - MLT1K LTR MaLR -329 259 22 298 266 32 11 chr6 166327415 166327509 -16087733 + MIR3 SINE MIR 100 195 -13 901 262 185 16 chr6 166327632 166328124 -16087118 + MER90 LTR ERV1 1 575 0 260 360 48 32 chr6 166328432 166328557 -16086685 - MER5B DNA MER1_type -51 127 1 410 235 130 9 chr6 166329186 166329301 -16085941 - MER94 DNA DNA -1 133 5 215 276 32 8 chr6 166329572 166329695 -16085547 + T-rich Low_complexity Low_complexity 3 128 0 2151 128 0 3 chr6 166331738 166332034 -16083208 - AluSx SINE Alu -17 295 1 1880 102 109 14 chr6 166332358 166332641 -16082601 + AluSx SINE Alu 3 312 0 217 316 33 26 chr6 166333599 166333735 -16081507 - MIR SINE MIR -88 120 19 26 0 0 0 chr6 166335273 166335299 -16079943 + AT_rich Low_complexity Low_complexity 1 26 0 313 296 9 0 chr6 166335505 166335620 -16079622 + L1MEd LINE L1 904 1019 -5100 1544 139 52 0 chr6 166335633 166335884 -16079358 + AluSx SINE Alu 49 312 0 4728 177 14 32 chr6 166335900 166336865 -16078377 - L1M2 LINE L1 -1814 4332 3385 4842 163 17 13 chr6 166336865 166337790 -16077452 + L1M2 LINE L1 4361 5302 -998 185 0 40 0 chr6 166337790 166337815 -16077427 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4842 163 17 13 chr6 166337815 166338275 -16076967 + L1M2 LINE L1 5302 5759 -541 2332 236 112 29 chr6 166338706 166339026 -16076216 - L1M4 LINE L1 -5754 788 496 2487 52 13 10 chr6 166339026 166339335 -16075907 - AluY SINE Alu -1 310 1 2332 236 112 29 chr6 166339335 166339739 -16075503 - L1M4 LINE L1 -6046 496 4 317 240 139 8 chr6 166339901 166340030 -16075212 + L2 LINE L2 3168 3313 0 23 0 0 0 chr6 166340779 166340802 -16074440 + AT_rich Low_complexity Low_complexity 1 23 0 1085 159 128 8 chr6 166340818 166341069 -16074173 - L1MA4 LINE L1 -7 6293 6013 251 175 18 0 chr6 166343700 166343757 -16071485 + CT-rich Low_complexity Low_complexity 2 59 0 446 283 8 17 chr6 166343816 166343936 -16071306 + MIR3 SINE MIR 13 131 -77 225 344 48 8 chr6 166346033 166346158 -16069084 + MIR SINE MIR 133 262 0 618 248 70 119 chr6 166346241 166347257 -16067985 - L1MEd LINE L1 -2218 3911 2946 23 0 0 0 chr6 166347330 166347353 -16067889 + AT_rich Low_complexity Low_complexity 1 23 0 412 165 10 10 chr6 166347353 166347450 -16067792 + (CA)n Simple_repeat Simple_repeat 2 98 0 763 281 73 30 chr6 166348416 166349102 -16066140 - L1MEd LINE L1 -4562 1748 977 334 143 16 32 chr6 166349357 166349420 -16065822 - U7 snRNA snRNA 0 63 2 206 254 18 0 chr6 166350180 166350235 -16065007 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 1861 132 119 6 chr6 166350441 166350768 -16064474 + THE1B LTR MaLR 1 364 0 236 354 54 23 chr6 166353066 166353196 -16062046 + MIR SINE MIR 65 198 -64 310 196 9 69 chr6 166354122 166354230 -16061012 + L1MC4 LINE L1 1995 6983 -1339 2543 140 27 63 chr6 166354251 166354772 -16060470 + L1MA6 LINE L1 5782 6283 -17 656 268 124 18 chr6 166354922 166355413 -16059829 + L1MEc LINE L1 1242 1764 -4451 320 265 47 71 chr6 166355472 166355683 -16059559 + L1MEc LINE L1 2442 2647 -3568 2177 150 3 3 chr6 166356112 166356459 -16058783 - MER7A DNA MER2_type 0 346 2 250 336 9 9 chr6 166358689 166358802 -16056440 + L1MC/D LINE L1 5729 5841 -1967 2777 262 78 17 chr6 166358958 166359180 -16056062 + L1ME1 LINE L1 34 241 -6155 2098 132 36 33 chr6 166359180 166359543 -16055699 - THE1B LTR MaLR 0 364 1 2777 262 78 17 chr6 166359543 166360314 -16054928 + L1ME1 LINE L1 241 1088 -5308 1660 143 54 83 chr6 166360314 166360700 -16054542 + THE1C LTR MaLR 1 375 0 4775 263 69 36 chr6 166360702 166363023 -16052219 + L1ME1 LINE L1 2104 4448 -1767 1270 268 30 44 chr6 166363131 166363605 -16051637 + L1ME1 LINE L1 5764 6230 -5 353 317 17 17 chr6 166363686 166363806 -16051436 + MIR3 SINE MIR 60 179 -29 278 287 81 29 chr6 166363868 166364004 -16051238 - MIR3 SINE MIR -63 145 3 207 0 0 0 chr6 166364569 166364592 -16050650 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 431 245 85 3 chr6 166366028 166366213 -16049029 - L1MA10 LINE L1 -6 6172 5971 764 305 34 24 chr6 166366254 166366546 -16048696 + MER102b DNA MER1_type 22 316 -25 219 343 75 62 chr6 166366799 166366945 -16048297 + L2 LINE L2 3118 3265 -7 387 0 0 0 chr6 166367003 166367046 -16048196 + (TG)n Simple_repeat Simple_repeat 2 44 0 2353 94 0 7 chr6 166369336 166369643 -16045599 + AluSx SINE Alu 1 305 -7 2183 117 114 25 chr6 166371470 166371916 -16043326 - LTR21A LTR ERV1 -19 486 1 367 234 75 0 chr6 166371976 166372070 -16043172 + MIR SINE MIR 48 148 -114 216 224 20 0 chr6 166372404 166372453 -16042789 - MIR SINE MIR -139 69 20 534 326 54 0 chr6 166373644 166373828 -16041414 - MIR SINE MIR -32 230 37 288 327 77 61 chr6 166373946 166374356 -16040886 - L2 LINE L2 -188 3084 2658 295 312 57 47 chr6 166374530 166374809 -16040433 - L2 LINE L2 -938 2376 2095 401 311 52 30 chr6 166374938 166375073 -16040169 - MIR3 SINE MIR -62 146 9 1194 214 38 16 chr6 166375074 166375387 -16039855 - MER58B DNA MER1_type -4 337 18 2090 145 0 0 chr6 166375456 166375752 -16039490 + AluSx SINE Alu 1 296 -16 354 355 50 0 chr6 166377181 166377322 -16037920 - MIR SINE MIR -21 241 94 2022 159 42 36 chr6 166379102 166379644 -16035598 + MLT2A2 LTR ERVL 2 554 0 1481 87 0 5 chr6 166381029 166381225 -16034017 - AluSq SINE Alu -118 195 1 1552 209 29 27 chr6 166381522 166381934 -16033308 + MER96B DNA MER1_type 1 413 -4 297 293 60 45 chr6 166382973 166383106 -16032136 - L2 LINE L2 -1 3271 3137 709 283 11 16 chr6 166383200 166383387 -16031855 + MIR SINE MIR 77 262 0 219 283 144 44 chr6 166383423 166383603 -16031639 - L2 LINE L2 -177 3095 2898 184 286 41 0 chr6 166383840 166383889 -16031353 + MIR SINE MIR 206 256 -6 198 0 0 0 chr6 166384564 166384586 -16030656 + (A)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr6 166386020 166386045 -16029197 + AT_rich Low_complexity Low_complexity 1 25 0 213 132 79 0 chr6 166386334 166386372 -16028870 - L2 LINE L2 -1 3312 3272 185 314 20 0 chr6 166386883 166386934 -16028308 - L2 LINE L2 -86 3227 3176 493 277 146 52 chr6 166389044 166389311 -16025931 - L2 LINE L2 0 3272 2981 786 278 9 9 chr6 166389400 166389616 -16025626 - MIR SINE MIR -39 223 8 462 300 8 0 chr6 166389667 166389797 -16025445 - MIR SINE MIR -10 252 122 22 35 0 0 chr6 166390454 166390483 -16024759 + AT_rich Low_complexity Low_complexity 1 29 0 602 258 102 28 chr6 166394241 166394563 -16020679 + L1ME LINE L1 5373 5718 -403 820 176 88 22 chr6 166394711 166394893 -16020349 + MSTD LTR MaLR 203 396 0 24 67 0 0 chr6 166395562 166395607 -16019635 + AT_rich Low_complexity Low_complexity 1 45 0 1998 109 29 45 chr6 166396135 166396447 -16018795 - AluSq SINE Alu -6 307 1 357 271 113 45 chr6 166396610 166396743 -16018499 - L2 LINE L2 -10 3303 3162 292 102 82 10 chr6 166396840 166396938 -16018304 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 204 67 0 0 chr6 166397591 166397621 -16017621 + (CA)n Simple_repeat Simple_repeat 1 30 0 191 36 36 0 chr6 166397801 166397829 -16017413 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 333 294 28 18 chr6 166398468 166398577 -16016665 + L2 LINE L2 3200 3309 -4 1528 197 105 32 chr6 166399872 166400340 -16014902 - MER92B LTR ERV1 -134 502 1 2237 132 0 0 chr6 166400813 166401117 -16014125 + AluSx SINE Alu 1 304 -8 2261 112 0 0 chr6 166403043 166403338 -16011904 + AluSc SINE Alu 1 295 -14 924 172 0 12 chr6 166403516 166403679 -16011563 + AluJ SINE Alu 5 165 -147 781 209 0 0 chr6 166403858 166403997 -16011245 + AluJ SINE Alu 167 305 -7 683 199 3 0 chr6 166404331 166404682 -16010560 + (CA)n Simple_repeat Simple_repeat 1 352 0 1896 216 13 8 chr6 166404713 166405107 -16010135 + MSTD LTR MaLR 1 396 0 683 149 0 8 chr6 166405553 166405674 -16009568 + ERVL-B2 LTR ERVL 5638 5757 -7 1160 177 0 0 chr6 166405674 166405877 -16009365 + MLT2B2 LTR ERVL 1 203 -312 1278 149 0 45 chr6 166406658 166406879 -16008363 + AluJb SINE Alu 86 296 -16 463 196 122 0 chr6 166407863 166407970 -16007272 - MIR SINE MIR -111 151 32 286 252 25 13 chr6 166408059 166408218 -16007024 + CT-rich Low_complexity Low_complexity 4 164 0 266 326 23 0 chr6 166408218 166408304 -16006938 - L2 LINE L2 -5 3308 3221 290 202 40 50 chr6 166408471 166408570 -16006672 - MLT1I LTR MaLR -195 214 117 231 238 71 87 chr6 166408630 166408756 -16006486 - L2 LINE L2 -95 3218 3095 364 224 0 0 chr6 166408834 166408919 -16006323 + MLT1E LTR MaLR 509 593 0 833 249 80 74 chr6 166409322 166409401 -16005841 - L1ME3A LINE L1 -286 5884 5807 1789 148 28 21 chr6 166409401 166409692 -16005550 - AluSx SINE Alu 0 312 20 833 249 80 74 chr6 166409692 166410139 -16005103 - L1ME3A LINE L1 -363 5807 5355 423 228 0 10 chr6 166410166 166410267 -16004975 - LTR33 LTR ERVL 0 521 422 374 268 86 53 chr6 166410416 166410625 -16004617 - LTR33 LTR ERVL -301 220 5 197 330 131 34 chr6 166410683 166410859 -16004383 - L3 LINE CR1 -78 1499 1307 4654 223 27 7 chr6 166410887 166412220 -16003022 - L1 LINE L1 -1724 4422 3063 1570 172 54 3 chr6 166412216 166412570 -16002672 + L1 LINE L1 4427 4798 -1348 * 697 241 19 0 chr6 166412626 166412833 -16002409 + L1 LINE L1 3277 3487 -2659 5204 149 34 30 chr6 166412836 166414192 -16001050 + L1PA16 LINE L1 4800 6157 -9 475 337 39 35 chr6 166414265 166414547 -16000695 - L3 LINE CR1 -601 976 694 229 309 146 0 chr6 166414587 166414697 -16000545 + MIR SINE MIR 53 178 -84 180 0 0 0 chr6 166415141 166415161 -16000081 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 377 290 89 40 chr6 166415988 166416236 -15999006 - MLT1K LTR MaLR -15 573 314 243 133 47 70 chr6 166416288 166416416 -15998826 + (TA)n Simple_repeat Simple_repeat 1 125 0 25 31 0 0 chr6 166416508 166416540 -15998702 + GC_rich Low_complexity Low_complexity 1 32 0 222 159 23 0 chr6 166416715 166416759 -15998483 + (TA)n Simple_repeat Simple_repeat 2 46 0 356 322 127 25 chr6 166416778 166417014 -15998228 + MIR SINE MIR 1 260 -2 21 36 0 0 chr6 166417143 166417171 -15998071 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 166417209 166417244 -15997998 + AT_rich Low_complexity Low_complexity 1 35 0 415 351 18 0 chr6 166417533 166417698 -15997544 - L2 LINE L2 -258 3055 2888 1951 122 56 61 chr6 166417827 166418204 -15997038 - THE1C LTR MaLR 0 375 1 1777 180 3 0 chr6 166418272 166418594 -15996648 + AluJo SINE Alu 1 323 0 603 235 52 63 chr6 166420391 166420833 -15994409 - L1ME4a LINE L1 -1 6120 5684 1858 169 35 72 chr6 166420949 166421352 -15993890 - MER61D LTR ERV1 0 501 114 13571 154 39 20 chr6 166421389 166422505 -15992737 - HUERS-P3b LTR ERV1 -2 7416 6322 1980 169 36 25 chr6 166422505 166422865 -15992377 + THE1B LTR MaLR 1 364 0 13571 154 39 20 chr6 166422865 166425479 -15989763 - HUERS-P3b LTR ERV1 -1096 6322 1407 4387 154 44 53 chr6 166425479 166426601 -15988641 - MER61D-int LTR ERV1 -299 4918 3787 395 208 0 0 chr6 166426601 166426678 -15988564 - MADE1 DNA Mariner 0 80 4 4387 154 44 53 chr6 166426678 166426707 -15988535 - MER61D-int LTR ERV1 -1430 3787 3759 192 40 0 0 chr6 166426707 166426732 -15988510 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4387 154 44 53 chr6 166426732 166426746 -15988496 - MER61D-int LTR ERV1 -1458 3759 695 833 138 28 106 chr6 166426750 166426967 -15988275 - MER61D-int LTR ERV1 -4763 454 255 2372 128 26 13 chr6 166427403 166427785 -15987457 - MER61D LTR ERV1 0 501 115 186 167 0 0 chr6 166428060 166428096 -15987146 + (TA)n Simple_repeat Simple_repeat 2 37 0 566 299 121 48 chr6 166428300 166428795 -15986447 - L1ME3A LINE L1 -221 5949 5419 677 277 68 55 chr6 166428831 166429394 -15985848 - L1ME3A LINE L1 -813 5333 4764 1124 189 42 0 chr6 166429643 166429833 -15985409 + AluJb SINE Alu 85 282 -30 290 260 16 8 chr6 166429879 166430006 -15985236 - L1ME3A LINE L1 -1636 4510 4383 1294 288 56 9 chr6 166430590 166431125 -15984117 - L1MC4a LINE L1 -1867 5924 5365 654 299 87 67 chr6 166431186 166431479 -15983763 - L1MC4a LINE L1 -4862 1257 972 2126 120 0 3 chr6 166431479 166431771 -15983471 + AluSx SINE Alu 1 291 -21 654 299 87 67 chr6 166431771 166432497 -15982745 - L1MC4a LINE L1 -5147 972 217 599 219 38 19 chr6 166432640 166432800 -15982442 - L1ME3A LINE L1 -8 6162 6000 315 247 0 3 chr6 166432857 166432952 -15982290 + L1ME3 LINE L1 5854 5947 -223 467 305 116 70 chr6 166433262 166434002 -15981240 - L1M4 LINE L1 -1302 4844 4071 1128 154 89 131 chr6 166435302 166435730 -15979512 - MER4C LTR ERV1 -10 455 46 286 140 0 18 chr6 166435911 166435968 -15979274 - MER4C LTR ERV1 -409 56 1 2229 127 0 0 chr6 166436192 166436500 -15978742 - AluSg SINE Alu -2 308 1 586 322 62 4 chr6 166437035 166437262 -15977980 - MIR SINE MIR -4 258 19 2246 132 0 0 chr6 166437380 166437690 -15977552 + AluSx SINE Alu 3 312 0 1819 195 25 8 chr6 166437963 166438322 -15976920 + MLT1A1 LTR MaLR 1 365 0 1742 153 7 11 chr6 166438770 166439052 -15976190 + AluSg SINE Alu 1 281 -29 1112 118 5 59 chr6 166439255 166439475 -15975767 + THE1A LTR MaLR 148 355 0 753 240 87 12 chr6 166439569 166439823 -15975419 - MLT1B LTR MaLR -4 386 114 2058 125 3 0 chr6 166439828 166440115 -15975127 + AluSq SINE Alu 2 289 -24 306 208 92 75 chr6 166440158 166440278 -15974964 - MLT1B LTR MaLR -268 122 1 366 238 151 64 chr6 166440706 166440878 -15974364 - MER5A DNA MER1_type 0 189 3 28 0 0 0 chr6 166441655 166441683 -15973559 + AT_rich Low_complexity Low_complexity 1 28 0 255 140 0 0 chr6 166442702 166442752 -15972490 + (TTCA)n Simple_repeat Simple_repeat 4 53 0 243 318 57 23 chr6 166442959 166443047 -15972195 - MER91C DNA MER1_type -32 108 18 225 282 55 98 chr6 166443156 166443319 -15971923 - L2 LINE L2 -434 2880 2725 418 283 31 57 chr6 166444045 166444204 -15971038 + MER5A DNA MER1_type 35 189 0 911 239 35 4 chr6 166444549 166444779 -15970463 + MLT1D LTR MaLR 267 503 -2 1765 232 45 28 chr6 166445291 166445609 -15969633 + LTR40a LTR ERVL 3 335 -184 2685 169 60 28 chr6 166445609 166445659 -15969583 - MLT2B3 LTR ERVL -4 550 503 372 59 0 0 chr6 166445659 166445710 -15969532 + (CA)n Simple_repeat Simple_repeat 1 51 0 2685 169 60 28 chr6 166445710 166446192 -15969050 - MLT2B3 LTR ERVL -51 503 1 1765 232 45 28 chr6 166446192 166446381 -15968861 + LTR40a LTR ERVL 335 519 0 308 252 25 17 chr6 166446522 166446641 -15968601 + (TA)n Simple_repeat Simple_repeat 2 121 0 384 277 0 0 chr6 166446655 166446832 -15968410 + (TA)n Simple_repeat Simple_repeat 1 177 0 27 29 0 0 chr6 166447068 166447102 -15968140 + AT_rich Low_complexity Low_complexity 1 34 0 565 181 19 0 chr6 166447216 166447321 -15967921 - MLT1D LTR MaLR -398 107 1 1162 195 47 113 chr6 166447324 166447749 -15967493 - MLT1D-int LTR MaLR -2 1369 973 640 272 65 27 chr6 166447914 166448486 -15966756 - L1M4c LINE L1 -4085 2561 1864 1281 202 87 84 chr6 166448506 166448606 -15966636 - L1M4c LINE L1 -5162 1380 1282 2212 125 13 0 chr6 166448606 166448910 -15966332 - AluSg SINE Alu -2 308 1 1281 202 87 84 chr6 166448910 166449396 -15965846 - L1M4c LINE L1 -5260 1282 789 204 40 0 0 chr6 166449396 166449421 -15965821 + (TC)n Simple_repeat Simple_repeat 1 25 0 183 50 100 0 chr6 166449434 166449474 -15965768 + (CCGCG)n Simple_repeat Simple_repeat 4 47 0 * 270 125 0 0 chr6 166449472 166449520 -15965722 + (C)n Simple_repeat Simple_repeat 1 48 0 314 248 271 27 chr6 166449520 166449782 -15965460 + L1M2 LINE L1 709 1034 -5815 180 0 0 0 chr6 166450418 166450438 -15964804 + (A)n Simple_repeat Simple_repeat 1 20 0 273 340 37 42 chr6 166451916 166452107 -15963135 + L2 LINE L2 2864 3053 -219 200 345 140 20 chr6 166452150 166452350 -15962892 + MIR SINE MIR 20 243 -19 12459 106 19 57 chr6 166453290 166456204 -15959038 + L1PA7 LINE L1 1 2961 -3500 224 253 0 24 chr6 166456482 166456565 -15958677 + (TA)n Simple_repeat Simple_repeat 2 82 0 23 33 0 0 chr6 166456646 166456676 -15958566 + AT_rich Low_complexity Low_complexity 1 30 0 7893 97 8 2 chr6 166456767 166458679 -15956563 + L1PA7 LINE L1 4548 6469 0 618 273 34 38 chr6 166458801 166459010 -15956232 + L2 LINE L2 3106 3313 0 1830 138 12 22 chr6 166459131 166459450 -15955792 + THE1C LTR MaLR 1 316 -59 748 300 36 54 chr6 166461118 166461451 -15953791 - L3 LINE CR1 -13 1564 1238 21 0 0 0 chr6 166463246 166463267 -15951975 + AT_rich Low_complexity Low_complexity 1 21 0 612 157 26 143 chr6 166564879 166564935 -15850307 - MLT1C LTR MaLR -256 211 150 2163 129 0 0 chr6 166564935 166565238 -15850004 + AluSq SINE Alu 1 303 -10 612 157 26 143 chr6 166565238 166565411 -15849831 - MLT1C LTR MaLR -317 150 9 404 258 161 27 chr6 166565763 166566023 -15849219 - L1ME4a LINE L1 -239 5882 5588 330 67 0 0 chr6 166566389 166566434 -15848808 + (CA)n Simple_repeat Simple_repeat 2 46 0 200 159 91 0 chr6 166567273 166567317 -15847925 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 349 236 52 29 chr6 166567317 166567432 -15847810 - L1MC4 LINE L1 -1339 6703 6614 2244 152 39 22 chr6 166567434 166567849 -15847393 + Tigger2a DNA MER2_type 12 433 -1 276 30 0 0 chr6 166569839 166569872 -15845370 + (TA)n Simple_repeat Simple_repeat 1 33 0 2057 105 0 53 chr6 166570989 166571293 -15843949 + AluSg SINE Alu 1 288 -22 417 327 19 6 chr6 166571765 166571924 -15843318 - MIR SINE MIR 0 262 102 290 328 99 35 chr6 166571935 166572106 -15843136 + L2 LINE L2 2897 3078 -194 1241 202 26 0 chr6 166572261 166572494 -15842748 + MER8 DNA MER2_type 1 239 0 425 319 6 35 chr6 166572808 166572977 -15842265 + MER5B DNA MER1_type 1 164 -14 247 317 57 24 chr6 166573175 166573298 -15841944 + L2 LINE L2 2916 3042 -230 323 209 45 75 chr6 166573372 166573506 -15841736 + MER5B DNA MER1_type 18 147 -31 1480 165 0 25 chr6 166573770 166574007 -15841235 - AluJb SINE Alu -81 231 1 388 274 17 87 chr6 166574464 166574763 -15840479 + MLT1I LTR MaLR 98 375 -34 550 246 138 44 chr6 166574764 166575126 -15840116 + L1MC5 LINE L1 7530 7925 -36 336 295 156 16 chr6 166576837 166576959 -15838283 + MER91C DNA MER1_type 2 140 0 362 280 50 10 chr6 166578140 166578240 -15837002 + MIR SINE MIR 2 105 -157 1813 163 46 27 chr6 166579003 166579371 -15835871 - THE1C LTR MaLR 0 375 1 187 369 25 57 chr6 166579401 166579523 -15835719 - MIR SINE MIR -127 135 18 * 296 305 78 32 chr6 166579522 166579676 -15835566 - MIR SINE MIR -95 167 7 304 325 9 9 chr6 166580513 166580627 -15834615 - L2 LINE L2 0 3313 3200 1826 174 12 68 chr6 166580644 166581057 -15834185 - MLT1B LTR MaLR 0 390 1 2347 103 0 0 chr6 166582275 166582576 -15832666 - AluSx SINE Alu -11 301 1 1177 203 27 40 chr6 166582985 166583111 -15832131 - MER58B DNA MER1_type -2079 341 215 2465 151 11 25 chr6 166583111 166583549 -15831693 - Tigger2a DNA MER2_type 0 434 3 1177 203 27 40 chr6 166583549 166583723 -15831519 - MER58B DNA MER1_type -2205 215 45 27 0 0 0 chr6 166583986 166584013 -15831229 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr6 166585281 166585307 -15829935 + AT_rich Low_complexity Low_complexity 1 26 0 4907 132 1 35 chr6 166585806 166586206 -15829036 - L1PA13 LINE L1 -1 6162 5750 1909 123 45 89 chr6 166586206 166586389 -15828853 + THE1B LTR MaLR 1 160 -204 2032 113 0 45 chr6 166586389 166586700 -15828542 + AluSg SINE Alu 6 302 -8 1909 123 45 89 chr6 166586700 166586897 -15828345 + THE1B LTR MaLR 160 364 0 4907 132 1 35 chr6 166586897 166587372 -15827870 - L1PA13 LINE L1 -413 5750 5317 * 5190 165 27 24 chr6 166587370 166591842 -15823400 - L1PA10 LINE L1 0 6168 1607 2467 228 101 31 chr6 166592258 166592382 -15822860 + L1ME1 LINE L1 1589 1703 -4512 2240 93 7 7 chr6 166592382 166592671 -15822571 + AluSc SINE Alu 1 289 -20 2467 228 101 31 chr6 166592671 166594049 -15821193 + L1ME1 LINE L1 1703 3159 -3056 1687 255 120 11 chr6 166594048 166594692 -15820550 + L1ME1 LINE L1 5510 6223 -12 * 260 286 71 14 chr6 166594980 166595120 -15820122 - MLT2F LTR ERVL -39 624 477 501 296 229 8 chr6 166595197 166595464 -15819778 - MLT2F LTR ERVL -321 342 17 211 172 0 47 chr6 166595487 166595551 -15819691 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 2119 108 0 3 chr6 166595608 166595894 -15819348 + AluY SINE Alu 18 302 -9 637 293 45 9 chr6 166595902 166596124 -15819118 - MIR SINE MIR -17 245 16 1673 97 0 16 chr6 166597569 166597817 -15817425 - L1PA5 LINE L1 0 6154 5911 180 26 26 51 chr6 166597844 166597883 -15817359 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 6735 140 33 12 chr6 166598019 166599224 -15816018 - Tigger3b DNA MER2_type 0 1231 1 2343 109 0 0 chr6 166600526 166600830 -15814412 - AluSx SINE Alu -8 304 1 181 353 41 25 chr6 166601282 166601404 -15813838 + L2 LINE L2 3180 3303 -10 221 385 103 14 chr6 166602641 166602854 -15812388 - MIR SINE MIR -11 251 20 534 239 77 0 chr6 166603007 166603124 -15812118 - L2 LINE L2 0 3313 3188 210 214 58 29 chr6 166603130 166603233 -15812009 + (TATAG)n Simple_repeat Simple_repeat 4 109 0 4652 282 81 23 chr6 166603412 166605263 -15809979 - L2 LINE L2 -158 3155 1199 473 326 87 6 chr6 166605683 166605855 -15809387 - MIR3 SINE MIR -5 203 18 1667 117 66 26 chr6 166607185 166607481 -15807761 + AluSq SINE Alu 1 307 0 655 308 31 18 chr6 166611168 166611395 -15803847 - MIR SINE MIR -13 249 20 5838 154 40 11 chr6 166612600 166613738 -15801504 - Tigger3b DNA MER2_type -60 1171 1 312 322 53 19 chr6 166613895 166614103 -15801139 + LTR33A LTR ERVL 1 215 -308 405 307 114 0 chr6 166614186 166614362 -15800880 + LTR33A LTR ERVL 318 513 -10 2004 152 3 3 chr6 166615403 166615700 -15799542 - AluJb SINE Alu -15 297 1 571 312 43 26 chr6 166615724 166615958 -15799284 + MIR SINE MIR 9 246 -16 1998 99 4 0 chr6 166618789 166619051 -15796191 - AluSp SINE Alu -13 300 38 839 105 0 0 chr6 166619095 166619209 -15796033 - AluSg/x SINE Alu -14 298 185 1184 225 62 9 chr6 166620148 166620472 -15794770 - LTR16C LTR ERVL 0 491 151 357 298 87 25 chr6 166620722 166620883 -15794359 + HAL1 LINE L1 1115 1285 -1222 4515 181 25 21 chr6 166621218 166622539 -15792703 + L1MB8 LINE L1 4857 6178 0 277 298 66 29 chr6 166622522 166622794 -15792448 + L1MC4a LINE L1 5029 5310 -836 * 403 285 90 0 chr6 166623188 166623418 -15791824 + L1MC4a LINE L1 5373 5634 -487 284 307 31 26 chr6 166623457 166623649 -15791593 + L1MC4a LINE L1 5730 5922 -1886 1232 198 10 13 chr6 166623796 166624099 -15791143 - MER33 DNA MER1_type -22 302 1 347 236 11 22 chr6 166625674 166625763 -15789479 + L2 LINE L2 3224 3311 -2 408 221 16 49 chr6 166627823 166627945 -15787297 - L2 LINE L2 -12 3301 3184 230 278 278 0 chr6 166627992 166628107 -15787135 + L2 LINE L2 2585 2731 -583 794 303 35 57 chr6 166628253 166628620 -15786622 + L2 LINE L2 2935 3293 -20 243 79 0 0 chr6 166628622 166628660 -15786582 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 244 246 0 0 chr6 166629029 166629086 -15786156 + L2 LINE L2 3257 3313 0 2528 175 11 0 chr6 166629586 166630026 -15785216 + L1MB3 LINE L1 5739 6183 0 2202 90 0 4 chr6 166633161 166633472 -15781770 + AluSq SINE Alu 6 315 0 200 309 223 29 chr6 166633544 166633683 -15781559 - MIR SINE MIR -91 171 6 230 338 99 14 chr6 166634950 166635092 -15780150 + L2 LINE L2 2579 2732 -582 2243 62 18 0 chr6 166635264 166635539 -15779703 - AluY SINE Alu -2 309 30 2238 95 3 0 chr6 166636645 166636955 -15778287 - AluSq SINE Alu 0 311 1 583 238 146 61 chr6 166637556 166637884 -15777358 + MLT1J LTR MaLR 156 511 0 2586 48 0 16 chr6 166637921 166638234 -15777008 - AluY SINE Alu -3 308 1 2420 174 0 0 chr6 166638640 166639003 -15776239 + MLT1A1 LTR MaLR 1 363 -2 2061 90 0 53 chr6 166639383 166639684 -15775558 - AluSg SINE Alu -21 289 5 2034 103 0 34 chr6 166640113 166640426 -15774816 - AluSg SINE Alu 0 303 1 272 300 68 95 chr6 166640797 166641134 -15774108 - L2 LINE L2 -108 3164 2837 1723 134 45 31 chr6 166641251 166641543 -15773699 - AluSx SINE Alu -16 296 1 208 191 43 0 chr6 166643297 166643344 -15771898 + GA-rich Low_complexity Low_complexity 4 52 0 3025 99 0 0 chr6 166644575 166644950 -15770292 - THE1C LTR MaLR 0 375 1 238 293 20 0 chr6 166646752 166646851 -15768391 + L1ME1 LINE L1 64 164 -5906 1008 212 58 71 chr6 166646857 166647272 -15767970 - MLT1A1 LTR MaLR 0 365 1 1562 256 136 55 chr6 166647750 166648787 -15766455 + L1ME1 LINE L1 270 1222 -5039 2274 100 19 13 chr6 166648787 166649097 -15766145 + AluSx SINE Alu 1 312 0 1562 256 136 55 chr6 166649097 166649808 -15765434 + L1ME1 LINE L1 1222 2209 -4052 1785 172 10 3 chr6 166649808 166650104 -15765138 + AluJb SINE Alu 1 298 -14 1562 256 136 55 chr6 166650104 166650284 -15764958 + L1ME1 LINE L1 2209 2373 -3888 290 278 31 10 chr6 166650301 166650398 -15764844 + L1M3 LINE L1 4855 4953 -1193 371 138 46 15 chr6 166650454 166650519 -15764723 + FRAM/FAM SINE Alu 1 60 -106 2079 167 30 19 chr6 166650553 166651218 -15764024 + L1M3 LINE L1 4981 5660 -508 401 167 0 0 chr6 166651211 166651277 -15763965 - L1M4 LINE L1 -3124 3022 2957 * 22 88 0 0 chr6 166651474 166651531 -15763711 + AT_rich Low_complexity Low_complexity 1 57 0 2075 148 21 9 chr6 166651670 166651995 -15763247 + MLT2B1 LTR ERVL 1 329 -191 3682 241 36 58 chr6 166651999 166652350 -15762892 + L1ME1 LINE L1 3465 3822 -2278 2490 66 0 3 chr6 166652350 166652652 -15762590 + AluY SINE Alu 1 301 -10 3682 241 36 58 chr6 166652652 166654265 -15760977 + L1ME1 LINE L1 3822 5469 -631 2088 141 24 40 chr6 166654265 166654635 -15760607 + THE1B LTR MaLR 1 364 0 3682 241 36 58 chr6 166654635 166654833 -15760409 + L1ME1 LINE L1 5469 5670 -430 1927 82 4 0 chr6 166654833 166655078 -15760164 - AluY SINE Alu -10 301 56 3682 241 36 58 chr6 166655078 166655264 -15759978 + L1ME1 LINE L1 5670 5859 -241 1770 233 17 44 chr6 166655264 166655741 -15759501 - MLT1C LTR MaLR -3 464 1 3682 241 36 58 chr6 166655741 166656114 -15759128 + L1ME1 LINE L1 5859 6066 -34 5554 118 7 15 chr6 166656498 166657354 -15757888 - L1PA14 LINE L1 0 6161 5313 26 30 0 0 chr6 166657588 166657621 -15757621 + AT_rich Low_complexity Low_complexity 1 33 0 309 305 30 37 chr6 166657874 166658038 -15757204 + MLT1J LTR MaLR 44 206 -305 338 244 271 9 chr6 166659164 166659389 -15755853 + L1ME4a LINE L1 5838 6121 0 290 324 14 22 chr6 166659405 166659544 -15755698 + L1ME4a LINE L1 5881 6018 -103 1810 140 19 46 chr6 166659912 166660219 -15755023 + AluJo SINE Alu 14 312 0 202 236 0 36 chr6 166660568 166660623 -15754619 + GA-rich Low_complexity Low_complexity 5 57 0 267 152 0 0 chr6 166660904 166660950 -15754292 + (TA)n Simple_repeat Simple_repeat 2 47 0 228 182 0 0 chr6 166660951 166660995 -15754247 - LTR66 LTR ERVL -172 438 395 361 252 17 17 chr6 166661829 166661944 -15753298 + L3b LINE CR1 1270 1384 -199 2039 131 0 20 chr6 166661992 166662298 -15752944 - AluSg SINE Alu -10 300 1 1080 189 14 54 chr6 166662443 166662665 -15752577 - MER20 DNA MER1_type -3 216 4 246 105 0 0 chr6 166663163 166663201 -15752041 + (TC)n Simple_repeat Simple_repeat 2 39 0 288 0 0 0 chr6 166663506 166663538 -15751704 + (TG)n Simple_repeat Simple_repeat 1 32 0 493 335 148 32 chr6 166665184 166665942 -15749300 + L2 LINE L2 1537 2382 -932 1045 236 208 5 chr6 166668285 166668679 -15746563 - L1ME3 LINE L1 -9 6153 5680 1170 204 22 26 chr6 166668683 166668953 -15746289 - L1ME3 LINE L1 -575 5587 5319 247 284 0 23 chr6 166669385 166669473 -15745769 - L2 LINE L2 -568 2746 2661 26 0 0 0 chr6 166669838 166669864 -15745378 + AT_rich Low_complexity Low_complexity 1 26 0 2213 111 0 0 chr6 166669865 166670153 -15745089 - AluSx SINE Alu -24 288 1 2679 114 35 10 chr6 166670631 166671034 -15744208 - L1MB3 LINE L1 -2 6181 5769 393 274 9 0 chr6 166671132 166671238 -15744004 - MIR SINE MIR -6 256 150 234 178 151 0 chr6 166671520 166671593 -15743649 + L1 LINE L1 3867 3950 -2196 290 312 107 55 chr6 166671893 166672146 -15743096 + L3 LINE CR1 539 804 -773 329 217 14 0 chr6 166672205 166672274 -15742968 - MLT1K LTR MaLR 0 588 519 445 347 85 34 chr6 166672699 166673051 -15742191 + L3 LINE CR1 955 1324 -253 384 328 108 5 chr6 166673279 166673483 -15741759 + L3 LINE CR1 1351 1575 -2 516 283 132 14 chr6 166674019 166674231 -15741011 + MIR SINE MIR 20 256 -6 443 383 40 8 chr6 166674307 166674560 -15740682 - MIR SINE MIR 0 262 2 611 238 40 7 chr6 166675780 166675931 -15739311 - MER5A DNA MER1_type 0 189 34 1373 204 25 31 chr6 166675957 166676280 -15738962 - MER33 DNA MER1_type 0 324 4 688 214 5 97 chr6 166676334 166676397 -15738845 - MER5B DNA MER1_type 0 178 111 2622 55 0 0 chr6 166676397 166676708 -15738534 + AluY SINE Alu 1 311 0 688 214 5 97 chr6 166676708 166676840 -15738402 - MER5B DNA MER1_type -67 111 1 349 319 83 14 chr6 166679684 166679828 -15735414 + L2 LINE L2 3119 3272 0 343 312 26 16 chr6 166682063 166682252 -15732990 - MLT1J LTR MaLR -320 191 1 4828 33 5 0 chr6 166682378 166682959 -15732283 - L1PA4 LINE L1 0 6155 5572 546 314 90 46 chr6 166683448 166683984 -15731258 - L2 LINE L2 -7 3306 2689 546 225 43 7 chr6 166683987 166684125 -15731117 - MLT1F LTR MaLR -399 143 1 4727 237 101 40 chr6 166684125 166686366 -15728876 - L1MEd LINE L1 -1210 4919 2543 41212 31 21 1 chr6 166686430 166692460 -15722782 - L1HS LINE L1 0 6155 1 1745 259 55 21 chr6 166692530 166693292 -15721950 + L1MEc LINE L1 1264 2051 -4345 626 320 69 9 chr6 166693443 166693762 -15721480 - L1MEc LINE L1 -5965 431 94 279 328 60 80 chr6 166693858 166694059 -15721183 + L2 LINE L2 3067 3263 -9 276 309 47 37 chr6 166694129 166694320 -15720922 - MER117 DNA MER1_type 0 197 5 993 245 16 12 chr6 166694371 166694616 -15720626 - MIR SINE MIR -11 251 6 191 235 20 0 chr6 166694790 166694841 -15720401 - L2 LINE L2 0 3313 3262 189 0 0 0 chr6 166695292 166695313 -15719929 + (A)n Simple_repeat Simple_repeat 1 21 0 403 225 185 7 chr6 166696655 166696806 -15718436 - MER45A DNA AcHobo 0 178 1 279 334 130 24 chr6 166698717 166699391 -15715851 - L2 LINE L2 -202 3070 2323 453 222 0 17 chr6 166700220 166700400 -15714842 + (TA)n Simple_repeat Simple_repeat 1 177 0 1804 159 41 47 chr6 166700496 166700695 -15714547 - MLT1A1 LTR MaLR 0 365 167 2290 168 65 0 chr6 166700695 166701095 -15714147 + MSTB LTR MaLR 1 426 0 1804 159 41 47 chr6 166701095 166701260 -15713982 - MLT1A1 LTR MaLR -198 167 3 395 299 135 19 chr6 166701657 166701864 -15713378 - L1MC4a LINE L1 -1875 5933 5703 345 250 96 92 chr6 166701889 166702129 -15713113 - L1MEd LINE L1 -3795 2334 2094 218 225 38 12 chr6 166702618 166702698 -15712544 + T-rich Low_complexity Low_complexity 4 85 0 2184 223 67 24 chr6 166702715 166703423 -15711819 - L1MD3 LINE L1 -6 7989 5616 26 0 0 0 chr6 166703456 166703482 -15711760 + AT_rich Low_complexity Low_complexity 1 26 0 319 264 104 17 chr6 166703653 166703884 -15711358 - L1MEd LINE L1 -4890 1229 979 21 0 0 0 chr6 166704020 166704041 -15711201 + AT_rich Low_complexity Low_complexity 1 21 0 818 122 0 0 chr6 166704120 166704243 -15710999 - AluSg/x SINE Alu -13 297 175 766 320 58 0 chr6 166704243 166704518 -15710724 - L1MEd LINE L1 -5346 773 483 793 279 84 11 chr6 166704764 166705051 -15710191 + LTR16A LTR ERVL 143 450 0 451 281 7 26 chr6 166705180 166705333 -15709909 - L1MEd LINE L1 -5958 161 12 1599 224 28 21 chr6 166705772 166706241 -15709001 - L1ME1 LINE L1 -4 6162 5691 1016 78 42 48 chr6 166707275 166707442 -15707800 - L1PA10 LINE L1 -1 6167 6002 2467 77 0 0 chr6 166707444 166707780 -15707462 + L1P4 LINE L1 5389 5724 -444 1194 232 79 59 chr6 166707837 166708332 -15706910 + MLT1D LTR MaLR 1 505 0 277 179 0 51 chr6 166708644 166708722 -15706520 + MER103 DNA DNA 3 76 -90 1185 146 0 5 chr6 166709193 166709398 -15705844 + AluSq SINE Alu 5 307 -6 2425 138 30 23 chr6 166710721 166711150 -15704092 - MSTB1 LTR MaLR 0 432 1 340 231 172 38 chr6 166711394 166711580 -15703662 - L1ME4a LINE L1 -71 6050 5840 2192 34 0 62 chr6 166713568 166713888 -15701354 - L1PA3 LINE L1 -2259 3887 3588 12699 21 0 0 chr6 166713888 166716135 -15699107 + L1PA3 LINE L1 3906 6152 -3 258 237 10 124 chr6 166716343 166716440 -15698802 + MIR SINE MIR 53 138 -124 22 0 0 0 chr6 166717345 166717367 -15697875 + AT_rich Low_complexity Low_complexity 1 22 0 2511 113 17 11 chr6 166717703 166718065 -15697177 - THE1B LTR MaLR 0 364 1 256 161 32 0 chr6 166720397 166720459 -15694783 + CT-rich Low_complexity Low_complexity 2 65 0 196 210 97 0 chr6 166720864 166720926 -15694316 - MIR SINE MIR -85 177 110 415 186 110 0 chr6 166722493 166722611 -15692631 + L1 LINE L1 3714 3844 -2302 * 10702 178 32 14 chr6 166722593 166722995 -15692247 + L1MA9 LINE L1 2726 3119 -3193 189 0 0 0 chr6 166722995 166723016 -15692226 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 10702 178 32 14 chr6 166723016 166723048 -15692194 + L1MA9 LINE L1 3119 3149 -3163 1484 169 74 24 chr6 166723048 166723344 -15691898 + AluJo SINE Alu 1 311 -1 10702 178 32 14 chr6 166723344 166725683 -15689559 + L1MA9 LINE L1 3149 5582 -730 1792 128 0 4 chr6 166725683 166725940 -15689302 + AluSx SINE Alu 42 297 -15 10702 178 32 14 chr6 166725940 166726685 -15688557 + L1MA9 LINE L1 5582 6312 0 474 297 72 40 chr6 166726755 166727004 -15688238 - L2 LINE L2 -5 3308 3052 1786 159 3 27 chr6 166727005 166727306 -15687936 + AluJo SINE Alu 6 299 -13 1225 259 109 35 chr6 166727932 166729065 -15686177 - HAL1 LINE L1 -744 1763 395 252 346 47 0 chr6 166729106 166729233 -15686009 - HAL1 LINE L1 -964 1543 1411 207 331 145 0 chr6 166830120 166830265 -15584977 + L2 LINE L2 3147 3312 -1 551 238 52 89 chr6 166831335 166831452 -15583790 - HAL1 LINE L1 -1429 1078 958 1899 167 7 0 chr6 166831452 166831752 -15583490 + AluJb SINE Alu 1 302 -10 551 238 52 89 chr6 166831752 166831983 -15583259 - HAL1 LINE L1 -1549 958 743 21 0 0 0 chr6 166832201 166832222 -15583020 + AT_rich Low_complexity Low_complexity 1 21 0 1793 111 66 26 chr6 166832225 166832496 -15582746 + AluSx SINE Alu 2 283 -29 294 306 52 0 chr6 166832809 166832943 -15582299 - HAL1 LINE L1 -2363 144 4 2131 130 26 3 chr6 166833201 166833548 -15581694 - MSTA LTR MaLR -73 355 1 1353 179 175 3 chr6 166835831 166836128 -15579114 + MER7A DNA MER2_type 1 346 0 239 279 16 0 chr6 166836157 166836218 -15579024 + L2 LINE L2 3137 3198 -74 2985 225 67 5 chr6 166836279 166837056 -15578186 - MER99 DNA DNA -1 827 3 856 300 84 39 chr6 166837059 166837596 -15577646 - MLT1G1 LTR MaLR -17 578 18 23 33 0 0 chr6 166839263 166839293 -15575949 + AT_rich Low_complexity Low_complexity 1 30 0 1627 251 128 42 chr6 166840408 166841388 -15573854 - L2 LINE L2 -1 3312 2236 372 363 105 31 chr6 166841507 166842030 -15573212 + L2 LINE L2 560 1121 -2193 443 277 26 13 chr6 166842033 166842188 -15573054 + MER5B DNA MER1_type 22 178 0 508 346 33 20 chr6 166842193 166842371 -15572871 + L2 LINE L2 1126 1311 -2003 2218 178 204 74 chr6 166842371 166843102 -15572140 + LTR1B LTR ERV1 1 826 0 508 346 33 20 chr6 166843102 166843229 -15572013 + L2 LINE L2 1311 1435 -1879 192 255 128 75 chr6 166843333 166843427 -15571815 + L2 LINE L2 3142 3240 -32 192 314 14 14 chr6 166843522 166843592 -15571650 - MIR3 SINE MIR -21 187 118 4227 63 68 5 chr6 166843810 166844382 -15570860 + LTR14B LTR ERVK 1 608 0 1956 144 0 0 chr6 166845447 166845731 -15569511 + AluSx SINE Alu 1 284 -28 204 252 46 107 chr6 166845828 166845959 -15569283 - MIR3 SINE MIR -48 160 38 1244 193 82 45 chr6 166846415 166846767 -15568475 + MLT1A1 LTR MaLR 1 365 0 781 169 7 7 chr6 166846797 166846933 -15568309 + AluJo SINE Alu 1 136 -176 488 139 0 0 chr6 166847045 166847117 -15568125 + AluJ/FLAM SINE Alu 1 72 -240 581 135 0 10 chr6 166847123 166847227 -15568015 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 412 298 77 43 chr6 166847417 166847652 -15567590 + L1ME LINE L1 2335 2577 -3963 242 290 37 62 chr6 166847683 166847764 -15567478 + L1ME LINE L1 2615 2696 -3844 2082 74 4 0 chr6 166847764 166848034 -15567208 + L1PA8 LINE L1 5901 6171 -1 242 290 37 62 chr6 166848034 166848276 -15566966 + L1ME LINE L1 2696 2930 -3610 338 297 93 23 chr6 166848681 166849340 -15565902 + L1ME LINE L1 3467 4171 -2369 415 328 41 45 chr6 166849359 166849628 -15565614 + L1ME LINE L1 4250 4525 -2015 2266 109 0 0 chr6 166849687 166849990 -15565252 + AluSx SINE Alu 1 303 -9 297 290 72 33 chr6 166850034 166851081 -15564161 + L1ME LINE L1 4957 6045 -519 1504 146 91 17 chr6 166851086 166851448 -15563794 - Charlie1 DNA MER1_type 0 2761 2373 * 1599 175 43 20 chr6 166851445 166851779 -15563463 - Charlie1 DNA MER1_type -577 2184 1843 471 202 55 0 chr6 166851779 166851888 -15563354 + MLT1A1 LTR MaLR 1 115 -250 8081 42 5 7 chr6 166851901 166853435 -15561807 + L1PA4 LINE L1 4390 5914 -241 21 0 0 0 chr6 166853565 166853586 -15561656 + AT_rich Low_complexity Low_complexity 1 21 0 187 241 24 12 chr6 166853595 166853678 -15561564 + GA-rich Low_complexity Low_complexity 2 85 0 330 266 213 19 chr6 166855528 166855735 -15559507 + MIR SINE MIR 2 248 -14 2351 85 0 0 chr6 166856986 166857279 -15557963 + AluSg SINE Alu 1 293 -17 346 296 142 4 chr6 166857996 166858249 -15556993 + L1ME4a LINE L1 5606 5893 -228 212 171 34 11 chr6 166858271 166858359 -15556883 + (TA)n Simple_repeat Simple_repeat 1 90 0 215 349 81 47 chr6 166861408 166861580 -15553662 - L2 LINE L2 -168 3104 2927 351 254 42 56 chr6 166861741 166861883 -15553359 - L2 LINE L2 -832 2482 2343 625 283 186 34 chr6 166862336 166862778 -15552464 - L2 LINE L2 -1 3312 2804 238 274 196 17 chr6 166862809 166862988 -15552254 + MIR SINE MIR 44 254 -8 2182 105 11 0 chr6 166863985 166864271 -15550971 + AluSq SINE Alu 6 294 -19 958 254 131 23 chr6 166864382 166864811 -15550431 + MLT1D LTR MaLR 31 505 0 24 96 0 0 chr6 166865140 166865213 -15550029 + AT_rich Low_complexity Low_complexity 1 73 0 237 65 0 0 chr6 166865412 166865443 -15549799 + (CA)n Simple_repeat Simple_repeat 1 31 0 197 192 0 19 chr6 166866458 166866510 -15548732 + GA-rich Low_complexity Low_complexity 6 56 0 289 293 89 21 chr6 166866597 166866788 -15548454 + L1ME LINE L1 5625 5828 -293 5901 141 18 3 chr6 166866790 166868304 -15546938 + L1MA4A LINE L1 4759 6298 -5 320 392 21 21 chr6 166869336 166869479 -15545763 + L2 LINE L2 3094 3236 -36 802 278 23 15 chr6 166869484 166869743 -15545499 - MIR SINE MIR 0 262 2 226 260 122 53 chr6 166869920 166870166 -15545076 - L1ME LINE L1 -303 5818 5556 2319 102 10 0 chr6 166870941 166871246 -15543996 + AluSx SINE Alu 1 308 -4 258 32 0 0 chr6 166871246 166871277 -15543965 + (CA)n Simple_repeat Simple_repeat 2 32 0 771 258 81 20 chr6 166871918 166872263 -15542979 + HAL1 LINE L1 1167 1532 -975 226 155 48 12 chr6 166872342 166872426 -15542816 + (TA)n Simple_repeat Simple_repeat 2 88 0 2073 120 0 40 chr6 166872757 166873082 -15542160 + AluSx SINE Alu 1 312 0 335 309 84 11 chr6 166873631 166873809 -15541433 - L1MEd LINE L1 -5449 670 480 209 219 47 16 chr6 166875786 166875850 -15539392 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 25 0 0 0 chr6 166876271 166876296 -15538946 + AT_rich Low_complexity Low_complexity 1 25 0 1014 39 0 0 chr6 166876296 166876423 -15538819 - L1MA2 LINE L1 0 6304 6178 247 290 25 8 chr6 166876905 166877030 -15538212 - L1ME LINE L1 -438 5683 5554 248 98 0 0 chr6 166877222 166877263 -15537979 + tRNA-Cys-TGC tRNA tRNA 1 41 -34 566 263 127 44 chr6 166878142 166878370 -15536872 + MIR SINE MIR 16 262 0 184 333 44 61 chr6 166878376 166878490 -15536752 - L2 LINE L2 -23 3290 3179 350 212 15 144 chr6 166878639 166878744 -15536498 - L2 LINE L2 0 3313 3227 1703 152 3 34 chr6 166878744 166879041 -15536201 + AluSg SINE Alu 1 288 -22 350 212 15 144 chr6 166879041 166879067 -15536175 - L2 LINE L2 -86 3227 3199 385 239 52 71 chr6 166879433 166879588 -15535654 - L2 LINE L2 -3 3310 3159 2461 83 0 3 chr6 166882135 166882447 -15532795 + AluY SINE Alu 1 311 0 433 194 181 28 chr6 166882619 166882763 -15532479 + LTR50 LTR ERVL 1 166 -629 453 288 0 8 chr6 166882818 166882936 -15532306 + LTR50 LTR ERVL 391 507 -288 237 269 45 0 chr6 166882939 166883006 -15532236 - MER81 DNA DNA -1 113 44 314 226 197 6 chr6 166883031 166883241 -15532001 + LTR33A LTR ERVL 388 771 -24 185 226 19 0 chr6 166883635 166883688 -15531554 + CT-rich Low_complexity Low_complexity 113 166 0 785 150 35 6 chr6 166883700 166883873 -15531369 + CT-rich Low_complexity Low_complexity 1 178 0 969 277 124 14 chr6 166883910 166884257 -15530985 - LTR16C LTR ERVL 0 491 107 433 284 203 0 chr6 166886452 166886649 -15528593 + MIR SINE MIR 20 256 -6 260 297 211 14 chr6 166887746 166887955 -15527287 + L3 LINE CR1 1263 1512 -65 380 283 143 64 chr6 166887963 166888383 -15526859 - LTR33A LTR ERVL -5 518 66 210 245 38 0 chr6 166888429 166888482 -15526760 + L3 LINE CR1 1506 1560 -17 4418 114 2 0 chr6 166890162 166890759 -15524483 + L1PA13 LINE L1 5564 6161 -2 1103 97 0 0 chr6 166891352 166891497 -15523745 + L1PA5 LINE L1 5995 6139 -15 326 61 61 0 chr6 166891505 166891571 -15523671 + (TA)n Simple_repeat Simple_repeat 1 70 0 244 298 83 16 chr6 166891615 166891736 -15523506 - L2 LINE L2 -222 3050 2922 187 274 0 65 chr6 166893001 166893063 -15522179 - L2 LINE L2 -12 3260 3203 767 223 34 17 chr6 166893229 166893404 -15521838 + MER45A DNA AcHobo 1 178 0 290 219 85 0 chr6 166894458 166894540 -15520702 + MER81 DNA DNA 26 114 0 28 0 0 0 chr6 166894813 166894841 -15520401 + AT_rich Low_complexity Low_complexity 1 28 0 375 196 62 54 chr6 166896300 166896398 -15518844 + MER117 DNA MER1_type 1 99 -98 848 199 82 0 chr6 166896398 166896569 -15518673 - MER58A DNA MER1_type 0 224 40 899 201 102 77 chr6 166896733 166897056 -15518186 + MER46C DNA MER2_type 4 334 -4 257 269 97 11 chr6 166897774 166897867 -15517375 - MIR3 SINE MIR -3 205 105 368 312 43 14 chr6 166897877 166898015 -15517227 - MIR SINE MIR -29 233 92 196 298 21 0 chr6 166898182 166898229 -15517013 - L2 LINE L2 -89 3183 3136 739 317 16 4 chr6 166898235 166898484 -15516758 + L2 LINE L2 2604 2855 -459 272 83 62 62 chr6 166898520 166898568 -15516674 + L2 LINE L2 3224 3271 -1 252 271 40 45 chr6 166898787 166898964 -15516278 + L1ME4a LINE L1 5729 5904 -217 843 229 84 86 chr6 166899009 166899128 -15516114 - Charlie4 DNA MER1_type 0 1961 1843 1319 218 77 42 chr6 166899128 166899481 -15515761 + MLT1A1 LTR MaLR 1 365 0 843 229 84 86 chr6 166899481 166899863 -15515379 - Charlie4 DNA MER1_type -118 1843 1461 333 192 26 0 chr6 166899903 166899981 -15515261 - L1ME2 LINE L1 0 6233 6154 1184 265 62 17 chr6 166899994 166900413 -15514829 - L1ME2 LINE L1 -170 6063 5626 1506 219 36 39 chr6 166900420 166900954 -15514288 - L1ME2 LINE L1 -2875 3340 2809 1160 193 73 13 chr6 166901069 166901302 -15513940 - MLT1D LTR MaLR 0 505 259 3113 151 90 12 chr6 166901316 166901826 -15513416 - MER44D DNA MER2_type 0 605 1 1256 313 87 42 chr6 166901865 166902120 -15513122 - L1ME2 LINE L1 -4948 1448 1206 2428 77 3 3 chr6 166902120 166902419 -15512823 - AluSp SINE Alu -12 301 3 1256 313 87 42 chr6 166902419 166903539 -15511703 - L1ME2 LINE L1 -5190 1206 12 1849 180 151 22 chr6 166903582 166903998 -15511244 + MLT2B2 LTR ERVL 6 475 -40 239 214 29 0 chr6 166904010 166904080 -15511162 + (TA)n Simple_repeat Simple_repeat 1 72 0 344 102 0 0 chr6 166904092 166904141 -15511101 + MLT2B2 LTR ERVL 472 520 0 558 248 45 0 chr6 166904259 166904416 -15510826 - Charlie4 DNA MER1_type -1681 280 117 414 173 8 123 chr6 166904417 166904439 -15510803 - L1ME LINE L1 -5122 948 925 2531 77 3 0 chr6 166904439 166904750 -15510492 - AluSp SINE Alu -1 312 1 414 173 8 123 chr6 166904750 166904893 -15510349 - L1ME LINE L1 -5145 925 810 430 188 129 0 chr6 166904895 166904996 -15510246 - Charlie4 DNA MER1_type -1804 157 44 427 194 56 0 chr6 166905009 166905117 -15510125 + L1ME4a LINE L1 5991 6104 -17 1756 122 11 0 chr6 166906543 166906806 -15508436 - L1MA1 LINE L1 0 6302 6037 332 154 19 0 chr6 166908185 166908240 -15507002 - AluJo/F(R)AM SINE Alu -88 214 168 642 101 0 0 chr6 166908240 166908350 -15506892 + AluJo/FRAM SINE Alu 204 313 0 24 0 0 0 chr6 166909879 166909903 -15505339 + AT_rich Low_complexity Low_complexity 1 24 0 196 364 71 10 chr6 166910032 166910131 -15505111 + MIR SINE MIR 42 146 -62 2302 124 164 13 chr6 166911355 166911727 -15503515 - MSTA LTR MaLR 0 428 1 564 227 67 0 chr6 166912051 166912170 -15503072 - MER58B DNA MER1_type -16 325 199 1111 274 50 44 chr6 166912354 166912810 -15502432 + LTR16C LTR ERVL 33 491 0 2494 114 13 39 chr6 166913231 166913616 -15501626 - THE1C LTR MaLR 0 375 1 195 225 25 0 chr6 166913846 166913886 -15501356 + L2 LINE L2 3018 3058 -214 244 205 26 103 chr6 166914336 166914453 -15500789 - L1MC5 LINE L1 -48 7913 7806 323 286 71 8 chr6 166916129 166916255 -15498987 - MIR SINE MIR -58 204 71 420 290 244 0 chr6 166916260 166916436 -15498806 - MIR SINE MIR -1 261 43 2138 105 3 16 chr6 166919704 166920018 -15495224 + AluSp SINE Alu 1 310 -3 324 289 143 34 chr6 166921239 166921540 -15493702 - L2 LINE L2 -245 3068 2729 510 114 0 0 chr6 166921565 166921644 -15493598 + (GA)n Simple_repeat Simple_repeat 1 79 0 189 0 0 0 chr6 166924304 166924325 -15490917 + (A)n Simple_repeat Simple_repeat 1 21 0 187 360 20 30 chr6 166925429 166925529 -15489713 + MER5B DNA MER1_type 1 99 -79 187 363 70 32 chr6 166925849 166926006 -15489236 + MIR3 SINE MIR 23 185 -23 795 268 87 0 chr6 166926376 166926607 -15488635 + MIR SINE MIR 2 252 -10 607 237 206 12 chr6 166926617 166926874 -15488368 - L1ME LINE L1 -311 5810 5504 272 195 23 0 chr6 166926985 166927060 -15488182 - L1ME LINE L1 -824 5346 5267 253 372 124 9 chr6 166927134 166927352 -15487890 - L2 LINE L2 -73 3199 2957 2213 127 7 0 chr6 166927412 166927720 -15487522 + AluSg SINE Alu 1 310 0 3961 172 12 18 chr6 166927916 166928660 -15486582 - L1MA7 LINE L1 -1 6290 5551 783 321 24 0 chr6 166929233 166929479 -15485763 + MIR SINE MIR 4 255 -7 2714 155 29 5 chr6 166929568 166929982 -15485260 - MSTB LTR MaLR -2 424 1 279 288 94 44 chr6 166930214 166930374 -15484868 - MLT1K LTR MaLR -20 568 401 356 203 0 0 chr6 166930636 166930695 -15484547 - MER2 DNA MER2_type -18 327 269 2539 148 49 7 chr6 166931198 166931609 -15483633 - MSTA LTR MaLR 0 428 1 350 236 136 14 chr6 166931857 166931997 -15483245 + MER103 DNA DNA 1 157 -9 2602 65 0 0 chr6 166933111 166933420 -15481822 + AluY SINE Alu 1 309 -2 520 277 13 31 chr6 166933423 166933582 -15481660 - MER5A DNA MER1_type -33 156 1 622 174 108 108 chr6 166935161 166935374 -15479868 + MER20 DNA MER1_type 1 213 -6 28 48 0 0 chr6 166935694 166935736 -15479506 + AT_rich Low_complexity Low_complexity 1 42 0 389 291 20 20 chr6 166937694 166937842 -15477400 - MER103 DNA DNA -18 148 1 2143 125 0 0 chr6 166938828 166939116 -15476126 + AluSx SINE Alu 1 288 -24 500 271 77 65 chr6 166939165 166939356 -15475886 + MIR SINE MIR 9 205 -57 1936 163 125 31 chr6 166939356 166939779 -15475463 - MLT1C LTR MaLR -4 463 1 500 271 77 65 chr6 166939779 166939834 -15475408 + MIR SINE MIR 205 258 -4 229 213 67 13 chr6 166939839 166939914 -15475328 + MER116 DNA Mariner 1 79 -1 1178 274 102 21 chr6 166940119 166940732 -15474510 + MER69 DNA AcHobo 3 665 -561 1155 219 47 28 chr6 166940735 166941095 -15474147 + MER69 DNA AcHobo 2153 2519 -7 25 0 0 0 chr6 166941538 166941563 -15473679 + AT_rich Low_complexity Low_complexity 1 25 0 905 311 71 21 chr6 166942442 166942866 -15472376 - L2 LINE L2 -5 3308 2864 286 248 28 83 chr6 166942992 166943035 -15472207 - MLT1H LTR MaLR -8 541 497 1814 153 58 15 chr6 166943035 166943362 -15471880 + MER2 DNA MER2_type 1 341 -3 286 248 28 83 chr6 166943362 166943427 -15471815 - MLT1H LTR MaLR -52 497 439 255 220 0 17 chr6 166944060 166944119 -15471123 - LTR33A LTR ERVL -19 504 447 801 188 19 7 chr6 166944552 166944706 -15470536 + THE1C LTR MaLR 1 156 -219 1016 102 25 6 chr6 166944806 166944993 -15470249 + L1PA2 LINE L1 5994 6155 0 600 164 10 144 chr6 166945089 166945184 -15470058 - LOR1-int LTR ERV1 -2889 3709 3653 1362 170 53 57 chr6 166945184 166945313 -15469929 + AluJo SINE Alu 1 129 -183 2357 90 0 0 chr6 166945313 166945603 -15469639 - AluY SINE Alu -20 291 2 1362 170 53 57 chr6 166945603 166945756 -15469486 + AluJo SINE Alu 129 282 -30 600 164 10 144 chr6 166945756 166945861 -15469381 - LOR1-int LTR ERV1 -2945 3653 3536 1460 165 86 99 chr6 166946127 166946145 -15469097 - LOR1-int LTR ERV1 -4323 2435 2418 2151 116 7 7 chr6 166946145 166946439 -15468803 + AluSx SINE Alu 1 294 -18 1460 165 86 99 chr6 166946439 166947159 -15468083 - LOR1-int LTR ERV1 -4340 2418 1541 2960 26 0 9 chr6 166947171 166947191 -15468051 + L1P2 LINE L1 5417 5436 -719 1495 51 0 0 chr6 166947191 166947367 -15467875 - L1PA4 LINE L1 -6 6149 5974 2960 26 0 9 chr6 166947367 166947691 -15467551 + L1P2 LINE L1 5436 5758 -397 2624 128 20 61 chr6 166947768 166948277 -15466965 - LOR1-int LTR ERV1 -6580 1540 1053 784 174 160 6 chr6 166948277 166948458 -15466784 - L1MC4 LINE L1 -1 8041 7752 403 241 105 25 chr6 166948461 166948623 -15466619 - MER34 LTR ERV1 0 542 368 1438 200 91 0 chr6 166948642 166948917 -15466325 - AluJo SINE Alu -12 300 1 234 309 0 0 chr6 166949136 166949204 -15466038 - LTR48B LTR ERV1 -425 219 152 221 308 0 0 chr6 166949461 166949513 -15465729 - L2 LINE L2 -10 3303 3252 2181 142 28 69 chr6 166949568 166949948 -15465294 - MER65-int LTR ERV1 -2871 2000 1641 2009 111 38 0 chr6 166949948 166950237 -15465005 - AluSx SINE Alu -6 306 7 2181 142 28 69 chr6 166950237 166950322 -15464920 - MER65-int LTR ERV1 -3230 1641 1554 2312 188 82 37 chr6 166950343 166950940 -15464302 - MER65-int LTR ERV1 -3529 1342 719 2285 117 20 9 chr6 166950986 166951328 -15463914 + THE1C LTR MaLR 29 374 -1 10777 102 34 5 chr6 166951333 166952853 -15462389 + THE1C-int LTR MaLR 17 1580 0 2077 104 39 7 chr6 166952854 166953162 -15462080 + THE1C LTR MaLR 1 318 -57 612 280 28 20 chr6 166953162 166953412 -15461830 + L1ME3A LINE L1 5686 5937 -233 23 0 0 0 chr6 166953440 166953463 -15461779 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 166953785 166953813 -15461429 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 166954552 166954573 -15460669 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr6 166955620 166955659 -15459583 + (TG)n Simple_repeat Simple_repeat 2 40 0 595 247 232 0 chr6 166956433 166956627 -15458615 + MIR SINE MIR 12 250 -12 260 59 0 0 chr6 166957072 166957106 -15458136 + L2 LINE L2 3271 3304 -9 2368 46 0 4 chr6 166957819 166958130 -15457112 - AluY SINE Alu 0 310 1 1296 156 33 0 chr6 166958371 166958582 -15456660 - L1PB4 LINE L1 -1 6155 5938 298 273 148 60 chr6 166959245 166959369 -15455873 + MIR SINE MIR 57 203 -59 414 139 25 25 chr6 166959369 166959448 -15455794 + MER116 DNA Mariner 1 79 -1 298 273 148 60 chr6 166959448 166959506 -15455736 + MIR SINE MIR 203 255 -7 2384 81 3 0 chr6 166959641 166959939 -15455303 + AluY SINE Alu 1 299 -12 200 333 36 24 chr6 166960999 166961083 -15454159 - MER5A DNA MER1_type -50 139 55 195 311 71 71 chr6 166961374 166961531 -15453711 - L3b LINE CR1 -241 1342 1183 2538 129 25 6 chr6 166961531 166961887 -15453355 + THE1B LTR MaLR 1 363 -1 195 311 71 71 chr6 166961887 166961967 -15453275 - L3b LINE CR1 -399 1184 1105 456 227 132 0 chr6 166961982 166962186 -15453056 - MER91B DNA MER1_type 0 190 1 448 295 158 6 chr6 166964236 166964419 -15450823 + MIR SINE MIR 17 227 -35 2086 129 0 0 chr6 166964812 166965090 -15450152 + AluSx SINE Alu 1 278 -34 919 95 13 6 chr6 166965093 166965251 -15449991 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 436 314 8 0 chr6 166966026 166966144 -15449098 - MIR3 SINE MIR -6 202 84 231 36 0 0 chr6 166967340 166967368 -15447874 + (TA)n Simple_repeat Simple_repeat 1 28 0 215 323 126 0 chr6 166967654 166967781 -15447461 + MIR3 SINE MIR 17 159 -49 183 129 0 0 chr6 166967934 166967965 -15447277 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 1634 166 4 15 chr6 166967966 166968237 -15447005 - AluJo SINE Alu -44 268 1 223 234 21 0 chr6 166968278 166968325 -15446917 + L3 LINE CR1 1523 1570 -7 416 241 45 9 chr6 166968386 166968498 -15446744 - MIR3 SINE MIR -41 167 52 884 111 0 16 chr6 166970603 166970729 -15444513 - FLAM_C SINE Alu -18 125 2 180 125 0 0 chr6 166971012 166971044 -15444198 + (CACCAT)n Simple_repeat Simple_repeat 4 35 0 622 195 30 8 chr6 166971322 166971458 -15443784 + MLT1A2 LTR MaLR 260 369 -5 324 266 111 32 chr6 166972494 166972678 -15442564 - MIR SINE MIR -42 220 33 * 1222 323 148 26 chr6 166972668 166973605 -15441637 - L3 LINE CR1 -11 1566 515 263 351 15 15 chr6 166973957 166974091 -15441151 - L3 LINE CR1 -1074 503 370 237 300 18 27 chr6 166974534 166974576 -15440666 + LTR67 LTR ERVL 449 490 -67 300 183 33 0 chr6 166974576 166974636 -15440606 + MLT1K LTR MaLR 519 580 -8 2175 107 7 0 chr6 166975312 166975602 -15439640 + AluSp SINE Alu 1 292 -21 612 245 123 0 chr6 166975926 166976081 -15439161 - MER45A DNA AcHobo -2 176 3 2237 113 0 10 chr6 166979371 166979681 -15435561 + AluSq SINE Alu 1 307 -6 216 0 0 0 chr6 166980621 166980645 -15434597 + (A)n Simple_repeat Simple_repeat 1 24 0 2121 115 3 10 chr6 166980645 166980982 -15434260 + AluY SINE Alu 1 311 0 238 310 45 57 chr6 166981014 166981259 -15433983 + HAL1b LINE L1 108 349 -999 1630 250 63 66 chr6 166982067 166982322 -15432920 + L1MC5 LINE L1 6488 6742 -1219 2246 109 13 7 chr6 166982322 166982625 -15432617 - AluSq SINE Alu -8 305 1 1630 250 63 66 chr6 166982625 166982802 -15432440 + L1MC5 LINE L1 6742 6918 -1043 1097 44 7 0 chr6 166982802 166982937 -15432305 - L1PA3 LINE L1 0 6155 6020 1630 250 63 66 chr6 166982937 166983395 -15431847 + L1MC5 LINE L1 6918 7375 -586 2114 92 16 20 chr6 166983477 166983622 -15431620 - L1PA13 LINE L1 0 6163 6019 1937 125 91 28 chr6 166983622 166983804 -15431438 + THE1C LTR MaLR 1 170 -205 315 65 0 0 chr6 166983804 166983850 -15431392 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 1937 125 91 28 chr6 166983850 166984020 -15431222 + THE1C LTR MaLR 170 375 0 2114 92 16 20 chr6 166984020 166984178 -15431064 - L1PA13 LINE L1 -144 6019 5861 241 229 133 0 chr6 166984183 166984266 -15430976 + L1MC5 LINE L1 7399 7492 -469 422 321 9 51 chr6 166984361 166984576 -15430666 + L1ME3A LINE L1 5964 6169 -1 204 125 0 0 chr6 166984671 166984703 -15430539 + (CA)n Simple_repeat Simple_repeat 1 32 0 184 229 21 0 chr6 166984713 166984761 -15430481 + MIR SINE MIR 103 151 -111 309 51 0 0 chr6 166985598 166985637 -15429605 + MADE1 DNA Mariner 42 80 0 21 0 0 0 chr6 166985819 166985840 -15429402 + AT_rich Low_complexity Low_complexity 1 21 0 725 274 25 8 chr6 166985842 166986079 -15429163 - MIR SINE MIR 0 262 22 206 300 56 0 chr6 166986341 166986431 -15428811 + MIR SINE MIR 21 115 -147 1160 229 10 10 chr6 166986484 166986798 -15428444 + L1MA10 LINE L1 6008 6321 -13 1731 80 32 8 chr6 166987366 166987617 -15427625 - L1PA10 LINE L1 0 6168 5912 231 281 0 0 chr6 166990052 166990109 -15425133 + L2 LINE L2 3244 3300 -13 278 309 29 14 chr6 166990372 166990511 -15424731 + L1ME4a LINE L1 3792 3932 -2214 2155 107 24 7 chr6 166990899 166991188 -15424054 + AluSx SINE Alu 1 294 -18 347 154 0 0 chr6 166991294 166991346 -15423896 + Alu SINE Alu 236 287 -15 276 348 25 0 chr6 166991375 166991576 -15423666 + L1ME4a LINE L1 4407 4612 -1534 248 272 0 25 chr6 166991977 166992058 -15423184 + A-rich Low_complexity Low_complexity 3 81 0 427 238 80 119 chr6 166992265 166992803 -15422439 + L1ME4a LINE L1 5328 5844 -277 459 276 40 13 chr6 166992829 166992981 -15422261 + L1ME4a LINE L1 5944 6099 -22 509 258 43 93 chr6 166992999 166993239 -15422003 - MIR SINE MIR -2 260 34 1922 166 85 49 chr6 166993312 166993781 -15421461 - Charlie1b DNA MER1_type -37 486 1 186 43 0 0 chr6 166994176 166994199 -15421043 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 291 277 0 0 chr6 166994319 166994384 -15420858 - L2 LINE L2 -87 3185 3121 889 217 24 19 chr6 166994782 166994989 -15420253 - MLT1A2 LTR MaLR 0 374 167 198 0 0 0 chr6 166994997 166995019 -15420223 + (TC)n Simple_repeat Simple_repeat 2 23 0 1382 152 23 61 chr6 166995027 166995291 -15419951 - AluJb SINE Alu -54 258 5 439 146 12 12 chr6 166995292 166995374 -15419868 - MLT1A2 LTR MaLR -206 159 78 1743 144 38 24 chr6 166996440 166996731 -15418511 + AluJo SINE Alu 1 295 -17 1267 164 168 3 chr6 166997834 166998144 -15417098 + L1MC2 LINE L1 5935 6295 -49 2348 128 118 3 chr6 166998144 166998527 -15416715 - MSTA LTR MaLR 0 428 2 1345 170 28 16 chr6 166999921 167000174 -15415068 - MER63C DNA MER1_type -2 928 673 2375 240 50 60 chr6 167000202 167001002 -15414240 + MER21B LTR ERV1 12 803 -60 701 245 24 34 chr6 167001054 167001262 -15413980 - MER63C DNA MER1_type -470 460 255 1258 102 0 0 chr6 167001626 167001802 -15413440 - L1PA6 LINE L1 -2 6152 5977 2025 154 3 0 chr6 167002810 167003121 -15412121 + AluSx SINE Alu 1 312 0 1244 148 238 63 chr6 167004649 167005015 -15410227 + MSTB1 LTR MaLR 3 432 0 2252 102 3 0 chr6 167005114 167005408 -15409834 - AluSx SINE Alu -17 295 1 1934 148 9 3 chr6 167005417 167005742 -15409500 - L1MB3 LINE L1 -2 6181 5855 307 328 55 40 chr6 167005995 167006196 -15409046 - MIR SINE MIR -40 222 19 2266 88 6 41 chr6 167008498 167008818 -15406424 + AluSg SINE Alu 1 309 -1 467 288 61 12 chr6 167012428 167012587 -15402655 + MLT1E3 LTR MaLR 52 218 -375 381 148 34 111 chr6 167012587 167012688 -15402554 + MLT1E2 LTR MaLR 1 96 -409 710 183 8 0 chr6 167012688 167012819 -15402423 + FLAM_C SINE Alu 2 133 -10 2182 219 68 8 chr6 167012819 167013331 -15401911 + MLT1E2 LTR MaLR 84 626 0 614 263 135 4 chr6 167013339 167013605 -15401637 + MLT1E3 LTR MaLR 284 584 -40 214 158 18 53 chr6 167014062 167014119 -15401123 + L3 LINE CR1 1521 1575 -2 207 260 133 45 chr6 167015907 167015935 -15399307 - MIR SINE MIR -15 247 223 520 250 18 0 chr6 167015935 167016047 -15399195 + MER81 DNA DNA 1 114 0 207 260 133 45 chr6 167016047 167016238 -15399004 - MIR SINE MIR -39 223 10 209 326 116 0 chr6 167016799 167016894 -15398348 + MIR SINE MIR 58 163 -99 1650 211 97 23 chr6 167017623 167018058 -15397184 + MLT1C LTR MaLR 1 467 0 423 273 57 35 chr6 167018552 167018847 -15396395 + L2 LINE L2 3009 3265 -7 221 200 27 80 chr6 167019142 167019217 -15396025 - MIR SINE MIR -81 181 111 2399 109 0 0 chr6 167019546 167019850 -15395392 + AluSq SINE Alu 1 304 -9 1213 187 18 0 chr6 167020214 167020333 -15394909 + AluJb SINE Alu 1 127 -185 724 56 37 0 chr6 167020333 167020441 -15394801 + (GAAA)n Simple_repeat Simple_repeat 2 113 0 1213 187 18 0 chr6 167020441 167020540 -15394702 + AluJb SINE Alu 127 223 -89 1761 238 97 41 chr6 167020844 167021084 -15394158 + MER119 DNA MER1_type 3 228 -355 3151 143 17 8 chr6 167021084 167021617 -15393625 + L1MB4 LINE L1 5643 6180 0 1761 238 97 41 chr6 167021617 167021910 -15393332 + MER119 DNA MER1_type 228 566 -17 1403 208 140 44 chr6 167021910 167022454 -15392788 + L1MC5 LINE L1 7272 7867 -94 184 265 0 0 chr6 167022801 167022850 -15392392 + L2 LINE L2 3265 3313 0 325 250 25 58 chr6 167024178 167024298 -15390944 + MER5B DNA MER1_type 63 178 0 672 150 21 124 chr6 167024306 167024370 -15390872 - MER5A DNA MER1_type 0 189 120 2470 91 0 0 chr6 167024370 167024677 -15390565 + AluSx SINE Alu 1 307 -5 2346 106 0 0 chr6 167024686 167024987 -15390255 + AluSx SINE Alu 1 301 -11 672 150 21 124 chr6 167024987 167025105 -15390137 - MER5A DNA MER1_type -77 112 17 1712 194 26 8 chr6 167026460 167026837 -15388405 - L1MB4 LINE L1 -1 6179 5796 196 306 35 35 chr6 167027619 167027704 -15387538 - MIR SINE MIR -150 112 28 2205 126 0 0 chr6 167028815 167029109 -15386133 + AluSg SINE Alu 1 294 -16 1781 168 0 23 chr6 167029163 167029466 -15385776 + AluJb SINE Alu 5 300 -12 487 243 119 46 chr6 167029542 167029913 -15385329 + L2 LINE L2 2283 2680 -634 628 283 24 19 chr6 167030291 167030503 -15384739 + MLT1I LTR MaLR 197 409 0 350 241 30 90 chr6 167030830 167030996 -15384246 + L2 LINE L2 3158 3313 0 782 220 21 5 chr6 167031224 167031410 -15383832 - MER5A DNA MER1_type 0 189 1 518 308 38 55 chr6 167032690 167032714 -15382528 + MIR SINE MIR 13 36 -226 2091 126 10 0 chr6 167032714 167033007 -15382235 + AluSx SINE Alu 1 296 -16 518 308 38 55 chr6 167033007 167033219 -15382023 + MIR SINE MIR 36 245 -17 664 197 127 0 chr6 167034201 167034343 -15380899 + MER63 DNA MER1_type 4 789 -47 200 186 0 85 chr6 167034832 167034891 -15380351 + MIR SINE MIR 116 169 -93 5146 122 4 32 chr6 167034908 167035698 -15379544 - L1MA4A LINE L1 0 6303 5536 648 242 0 8 chr6 167036427 167036555 -15378687 + FLAM_A SINE Alu 1 127 -6 253 313 74 21 chr6 167036669 167037008 -15378234 + L1M4c LINE L1 2120 2476 -5091 569 362 18 9 chr6 167037018 167037236 -15378006 + MLT2F LTR ERVL 4 223 -440 2460 241 102 6 chr6 167037264 167037932 -15377310 + L1M4c LINE L1 11 742 -6823 5279 148 20 6 chr6 167037984 167038764 -15376478 + L1MC1 LINE L1 5486 6280 -53 1841 154 0 27 chr6 167038764 167039062 -15376180 - AluJb SINE Alu -22 290 1 5279 148 20 6 chr6 167039062 167039115 -15376127 + L1MC1 LINE L1 6280 6331 -2 361 307 21 73 chr6 167039115 167039307 -15375935 + L1M4c LINE L1 2809 2990 -4756 415 298 98 44 chr6 167039316 167039591 -15375651 + L1MCc LINE L1 34 323 -6100 2185 129 0 0 chr6 167039627 167039930 -15375312 + AluSx SINE Alu 1 303 -9 1805 237 39 66 chr6 167040292 167041161 -15374081 + L1MCc LINE L1 852 1702 -4889 183 156 0 0 chr6 167041163 167041195 -15374047 + (CA)n Simple_repeat Simple_repeat 2 33 0 452 266 11 23 chr6 167041204 167041381 -15373861 + L1MCc LINE L1 1952 2126 -4815 * 3475 226 70 11 chr6 167041372 167042412 -15372830 + L1MCc LINE L1 2905 3967 -2974 485 250 25 55 chr6 167042408 167042551 -15372691 + L1M4c LINE L1 2977 3114 -4632 * 1609 227 81 31 chr6 167042551 167043031 -15372211 - MLT1D LTR MaLR -1 504 1 485 250 25 55 chr6 167043031 167043087 -15372155 + L1M4c LINE L1 3114 3170 -4576 1646 160 8 8 chr6 167043357 167043625 -15371617 - AluJo SINE Alu -44 268 1 255 210 10 50 chr6 167043638 167043738 -15371504 + L1M4c LINE L1 3486 3581 -4165 194 314 48 38 chr6 167043755 167043860 -15371382 - MIR SINE MIR -131 131 26 272 348 124 15 chr6 167044967 167045168 -15370074 - L2 LINE L2 -8 3264 3042 7105 100 31 3 chr6 167045243 167046380 -15368862 + L1MA3 LINE L1 5136 6303 -2 1429 213 57 3 chr6 167046439 167046772 -15368470 + L1ME1 LINE L1 5511 5861 -305 910 232 52 36 chr6 167047091 167047387 -15367855 - MER51A LTR ERV1 0 640 341 305 224 0 0 chr6 167047470 167047528 -15367714 - MER51C LTR ERV1 -260 380 323 320 221 0 0 chr6 167047567 167047635 -15367607 - MER51A LTR ERV1 -566 68 1 183 80 0 0 chr6 167048365 167048390 -15366852 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 367 302 24 16 chr6 167048642 167048768 -15366474 - MER5A DNA MER1_type 0 189 63 * 376 333 7 28 chr6 167048664 167048808 -15366434 + MER5A DNA MER1_type 34 174 -15 916 208 6 18 chr6 167049219 167049387 -15365855 + FRAM SINE Alu 1 166 0 270 176 0 0 chr6 167049404 167049455 -15365787 + GA-rich Low_complexity Low_complexity 4 54 0 279 250 142 25 chr6 167049671 167049791 -15365451 - MER117 DNA MER1_type -31 166 33 187 225 25 0 chr6 167049816 167049856 -15365386 - L2 LINE L2 -8 3305 3265 283 304 35 26 chr6 167049992 167050107 -15365135 + L1ME LINE L1 5746 5861 -309 2813 10 0 0 chr6 167050107 167050411 -15364831 + AluYa5 SINE Alu 1 304 -7 293 306 81 32 chr6 167051640 167051814 -15363428 - MIR SINE MIR -56 206 29 789 295 65 27 chr6 167052020 167052389 -15362853 - HAL1 LINE L1 -2119 388 6 5327 148 72 3 chr6 167053435 167054348 -15360894 + L1MC1 LINE L1 5358 6333 0 353 202 18 18 chr6 167054426 167054540 -15360702 + G-rich Low_complexity Low_complexity 3 116 0 477 101 0 14 chr6 167054701 167054770 -15360472 + Tigger2 DNA MER2_type 2 69 -2649 * 2625 128 61 5 chr6 167054754 167055182 -15360060 + Tigger2 DNA MER2_type 2267 2718 0 1483 228 102 61 chr6 167055182 167055752 -15359490 - MLT1E LTR MaLR 0 593 1 1503 168 46 0 chr6 167055762 167056067 -15359175 - AluJb SINE Alu 0 326 10 2324 112 32 35 chr6 167056067 167056441 -15358801 - THE1C LTR MaLR -2 373 1 2130 130 3 0 chr6 167056644 167056936 -15358306 + AluSg SINE Alu 1 293 -17 287 298 19 63 chr6 167057930 167058088 -15357154 - MER5A DNA MER1_type -11 178 28 326 120 0 20 chr6 167058272 167058322 -15356920 + L2 LINE L2 3184 3232 -81 1209 152 10 25 chr6 167059099 167059303 -15355939 + Tigger5 DNA MER2_type 2123 2323 0 213 39 0 0 chr6 167059803 167059829 -15355413 + (GGA)n Simple_repeat Simple_repeat 3 28 0 219 248 0 0 chr6 167061130 167061235 -15354007 + CT-rich Low_complexity Low_complexity 2 106 0 494 201 0 6 chr6 167061319 167061483 -15353759 + CT-rich Low_complexity Low_complexity 1 163 0 246 128 0 0 chr6 167061536 167061575 -15353667 + (GGGAGA)n Simple_repeat Simple_repeat 4 42 0 318 324 104 43 chr6 167062275 167062553 -15352689 - MLT1J LTR MaLR -200 311 17 203 244 0 0 chr6 167062593 167062638 -15352604 - L2 LINE L2 -1 3312 3268 711 278 123 32 chr6 167062977 167063474 -15351768 + MLT2F LTR ERVL 40 581 -82 680 94 9 0 chr6 167063848 167063954 -15351288 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 1539 162 63 4 chr6 167063972 167064225 -15351017 + AluJb SINE Alu 1 268 -44 44 20 0 0 chr6 167064238 167064289 -15350953 + AT_rich Low_complexity Low_complexity 1 51 0 33 25 0 0 chr6 167064655 167064695 -15350547 + AT_rich Low_complexity Low_complexity 1 40 0 380 221 82 51 chr6 167064850 167065008 -15350234 + MER103 DNA DNA 3 165 -1 2556 121 25 0 chr6 167065038 167065393 -15349849 + THE1B LTR MaLR 1 364 0 216 123 35 35 chr6 167065486 167065543 -15349699 + (TA)n Simple_repeat Simple_repeat 2 58 0 219 164 55 27 chr6 167065643 167065716 -15349526 + (TA)n Simple_repeat Simple_repeat 1 75 0 44199 45 2 0 chr6 167066093 167072227 -15343015 + L1PA4 LINE L1 7 6152 -3 1851 283 96 54 chr6 167072314 167072332 -15342910 + L1MEd LINE L1 67 83 -6227 1325 204 68 53 chr6 167072332 167072671 -15342571 - MER2 DNA MER2_type 0 344 1 1851 283 96 54 chr6 167072671 167074220 -15341022 + L1MEd LINE L1 83 1731 -4579 2181 105 62 49 chr6 167074314 167074684 -15340558 - THE1C LTR MaLR 0 375 1 10162 127 16 45 chr6 167074684 167076307 -15338935 - THE1C-int LTR MaLR 0 1580 5 1793 137 99 38 chr6 167076311 167076654 -15338588 - THE1B LTR MaLR 0 364 1 308 313 54 57 chr6 167076996 167077093 -15338149 + L1MEd LINE L1 2186 2282 -3847 2173 131 0 0 chr6 167077093 167077405 -15337837 + AluSx SINE Alu 1 312 0 308 313 54 57 chr6 167077405 167077713 -15337529 + L1MEd LINE L1 2282 2590 -3539 2008 135 24 3 chr6 167077715 167078012 -15337230 + AluSx SINE Alu 1 303 -9 428 103 51 8 chr6 167078077 167078194 -15337048 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 411 145 0 0 chr6 167078379 167078448 -15336794 + Alu SINE Alu 236 304 -8 283 320 130 0 chr6 167079277 167079377 -15335865 - L2 LINE L2 -4 3268 3156 317 296 56 9 chr6 167080846 167080954 -15334288 + MIR SINE MIR 63 175 -87 1358 214 32 56 chr6 167080960 167081291 -15333951 + L1MC4 LINE L1 7155 7475 -567 2497 128 28 14 chr6 167081291 167081650 -15333592 - THE1B LTR MaLR 0 364 1 1358 214 32 56 chr6 167081650 167081749 -15333493 + L1MC4 LINE L1 7475 7575 -467 1647 209 80 27 chr6 167081776 167082216 -15333026 + MLT1D LTR MaLR 43 505 0 1757 171 58 88 chr6 167082216 167082243 -15332999 + L1MC4 LINE L1 7572 7598 -444 2011 157 3 0 chr6 167082243 167082548 -15332694 + AluSx SINE Alu 1 306 -6 1757 171 58 88 chr6 167082548 167083006 -15332236 + L1MC4 LINE L1 7598 8042 0 697 262 74 10 chr6 167083143 167083345 -15331897 + MIR SINE MIR 13 227 -35 600 119 0 175 chr6 167083364 167083490 -15331752 + AluJo SINE Alu 57 160 -152 214 324 67 29 chr6 167083732 167083837 -15331405 - L2 LINE L2 -23 3290 3182 21 36 0 0 chr6 167085799 167085827 -15329415 + AT_rich Low_complexity Low_complexity 1 28 0 2808 226 64 36 chr6 167085895 167086821 -15328421 - L1ME2 LINE L1 -9 6549 5601 805 235 12 6 chr6 167086824 167086994 -15328248 - AluJo SINE Alu -22 290 120 714 216 43 19 chr6 167086994 167087202 -15328040 - L1ME2 LINE L1 -958 5582 5370 354 284 111 52 chr6 167087243 167087298 -15327944 - L1ME2 LINE L1 -4631 1909 1859 2230 128 0 0 chr6 167087298 167087596 -15327646 - AluSx SINE Alu -14 298 1 354 284 111 52 chr6 167087596 167087887 -15327355 - L1ME2 LINE L1 -4681 1859 1548 238 169 62 31 chr6 167088294 167088359 -15326883 + MLT1L LTR MaLR 18 84 -531 484 285 29 24 chr6 167088519 167088726 -15326516 + MLT1J LTR MaLR 259 466 -45 434 225 108 6 chr6 167089373 167089762 -15325480 - L1ME4a LINE L1 -49 6072 5570 305 223 117 10 chr6 167089811 167089914 -15325328 - L1ME4a LINE L1 -652 5469 5356 6932 138 45 14 chr6 167090241 167091421 -15323821 + Tigger3b DNA MER2_type 15 1231 0 1880 145 13 3 chr6 167091586 167091889 -15323353 + AluSx SINE Alu 1 306 -6 195 302 162 28 chr6 167092206 167092385 -15322857 + MIR SINE MIR 51 253 -9 436 192 35 23 chr6 167093870 167094042 -15321200 + (TA)n Simple_repeat Simple_repeat 2 175 0 806 103 0 17 chr6 167097655 167097772 -15317470 - AluY SINE Alu 0 311 197 2003 118 0 0 chr6 167097837 167098123 -15317119 + AluSx SINE Alu 21 306 0 1291 201 34 22 chr6 167098371 167098639 -15316603 + L1MDa LINE L1 29 299 -6241 357 24 0 0 chr6 167099192 167099234 -15316008 + (CA)n Simple_repeat Simple_repeat 2 43 0 439 298 91 33 chr6 167099237 167099512 -15315730 + L1MDa LINE L1 470 760 -5770 3152 145 2 23 chr6 167099713 167100236 -15315006 + L1MB2 LINE L1 5619 6130 -41 842 213 0 7 chr6 167100241 167100396 -15314846 + FRAM SINE Alu 5 158 -8 696 304 72 37 chr6 167101018 167101393 -15313849 - L2 LINE L2 -5 3308 2921 667 234 38 0 chr6 167101749 167101907 -15313335 - MER58A DNA MER1_type -18 206 43 1981 125 7 4 chr6 167101957 167102271 -15312971 + AluSx SINE Alu 1 315 0 843 232 175 67 chr6 167102271 167102750 -15312492 + Charlie7 DNA MER1_type 46 576 -2036 2285 197 54 48 chr6 167102760 167103170 -15312072 - MLT1F LTR MaLR 0 542 127 2075 149 0 0 chr6 167103170 167103471 -15311771 + AluSx SINE Alu 1 301 -11 2285 197 54 48 chr6 167103471 167103599 -15311643 - MLT1F LTR MaLR -415 127 1 464 255 78 0 chr6 167103599 167103740 -15311502 - MLT1F-int LTR MaLR 0 1371 1220 444 37 0 0 chr6 167103861 167103915 -15311327 + (TG)n Simple_repeat Simple_repeat 1 54 0 1809 203 88 25 chr6 167103918 167104362 -15310880 - MLT2B2 LTR ERVL -42 473 2 216 310 0 23 chr6 167105109 167105196 -15310046 + GA-rich Low_complexity Low_complexity 4 88 0 503 253 7 7 chr6 167105654 167105800 -15309442 - MIR SINE MIR 0 262 117 342 268 116 0 chr6 167107672 167107810 -15307432 - MIR SINE MIR -16 246 93 784 121 8 23 chr6 167108356 167108488 -15306754 + FLAM_A SINE Alu 13 142 0 195 297 0 16 chr6 167109445 167109509 -15305733 - L2 LINE L2 -31 3282 3220 197 62 0 31 chr6 167109783 167109815 -15305427 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 218 176 0 59 chr6 167110275 167110326 -15304916 + C-rich Low_complexity Low_complexity 3 50 0 2009 106 44 3 chr6 167110778 167111071 -15304171 - AluSx SINE Alu -7 305 1 235 297 65 29 chr6 167111261 167111399 -15303843 - MIR SINE MIR -117 145 3 1107 289 139 33 chr6 167111425 167112000 -15303242 + MLT2F LTR ERVL 10 645 -18 1216 293 77 43 chr6 167112612 167113153 -15302089 + ERVL LTR ERVL 772 1346 -4418 2156 120 21 0 chr6 167113153 167113444 -15301798 + AluSx SINE Alu 1 297 -15 1216 293 77 43 chr6 167113444 167113629 -15301613 + ERVL LTR ERVL 1346 1523 -4241 537 265 154 7 chr6 167115081 167115290 -15299952 + L2 LINE L2 2908 3167 -146 414 0 0 0 chr6 167115290 167115336 -15299906 + (TG)n Simple_repeat Simple_repeat 2 47 0 537 265 154 7 chr6 167115336 167115398 -15299844 + L2 LINE L2 3167 3219 -94 265 282 0 14 chr6 167116744 167116815 -15298427 + MIR3 SINE MIR 85 154 -54 705 195 5 65 chr6 167116823 167117008 -15298234 + MER5B DNA MER1_type 3 176 -2 380 202 11 21 chr6 167117465 167117559 -15297683 - L2 LINE L2 0 3313 3221 1025 118 0 0 chr6 167117742 167117878 -15297364 + AluJ SINE Alu 1 136 -176 1904 141 0 37 chr6 167117878 167118175 -15297067 + AluSx SINE Alu 1 286 -26 240 143 0 0 chr6 167118175 167118217 -15297025 + (TA)n Simple_repeat Simple_repeat 1 42 0 961 177 0 33 chr6 167118218 167118399 -15296843 + AluJ SINE Alu 127 301 -11 369 234 21 11 chr6 167118682 167118776 -15296466 - MIR3 SINE MIR -4 204 110 2837 153 48 10 chr6 167120551 167121053 -15294189 + L1MC1 LINE L1 209 729 -5811 5856 131 87 76 chr6 167121091 167121579 -15293663 + L1MC1 LINE L1 1049 1530 -5010 2488 75 0 3 chr6 167121579 167121885 -15293357 + AluY SINE Alu 1 305 -6 5856 131 87 76 chr6 167121885 167122557 -15292685 + L1MC1 LINE L1 1530 2193 -4347 2115 128 0 14 chr6 167122557 167122854 -15292388 + AluSx SINE Alu 1 293 -19 5856 131 87 76 chr6 167122854 167122969 -15292273 + L1MC1 LINE L1 2193 2305 -4235 2355 48 42 7 chr6 167122969 167123258 -15291984 - AluY SINE Alu -12 299 1 5856 131 87 76 chr6 167123258 167123352 -15291890 + L1MC1 LINE L1 2305 2435 -4105 198 0 0 0 chr6 167123874 167123896 -15291346 + (A)n Simple_repeat Simple_repeat 1 22 0 830 170 41 17 chr6 167124361 167124561 -15290681 + L1MC1 LINE L1 2386 2579 -3961 1763 189 0 3 chr6 167124561 167124867 -15290375 + AluJb SINE Alu 1 305 -7 830 170 41 17 chr6 167124867 167124903 -15290339 + L1MC1 LINE L1 2579 2613 -3927 39709 68 10 14 chr6 167124911 167128214 -15287028 + L1PA6 LINE L1 11 3326 -2841 2410 86 0 13 chr6 167128214 167128528 -15286714 + AluY SINE Alu 1 310 -1 39709 68 10 14 chr6 167128528 167131019 -15284223 + L1PA6 LINE L1 3326 5826 -341 378 0 0 0 chr6 167131019 167131061 -15284181 + (TCTCCC)n Simple_repeat Simple_repeat 2 43 0 7198 44 3 48 chr6 167131061 167132577 -15282665 + SVA Other Other 58 1386 0 39709 68 10 14 chr6 167132577 167132974 -15282268 + L1PA6 LINE L1 5824 6167 0 1873 239 10 45 chr6 167132976 167133557 -15281685 + L1MC1 LINE L1 2607 3167 -3373 * 4449 221 11 43 chr6 167133535 167133562 -15281680 + L1MC1 LINE L1 3522 3548 -2992 2214 101 0 3 chr6 167133562 167133850 -15281392 + AluSg SINE Alu 1 287 -23 4449 221 11 43 chr6 167133850 167133881 -15281361 + L1MC1 LINE L1 3548 3578 -2962 261 0 0 0 chr6 167133881 167133910 -15281332 + (CAT)n Simple_repeat Simple_repeat 2 30 0 4449 221 11 43 chr6 167133910 167135087 -15280155 + L1MC1 LINE L1 3578 4718 -1822 9039 150 22 19 chr6 167135087 167137646 -15277596 + L1MA4 LINE L1 3728 6289 -11 6150 155 27 20 chr6 167137657 167137740 -15277502 + L1MC1 LINE L1 5553 5634 -1093 2113 128 3 3 chr6 167137740 167138038 -15277204 - AluSx SINE Alu -14 298 1 6150 155 27 20 chr6 167138038 167138661 -15276581 + L1MC1 LINE L1 5634 6265 -462 2219 93 7 3 chr6 167138661 167138961 -15276281 - AluSc SINE Alu -8 301 1 6150 155 27 20 chr6 167138961 167139420 -15275822 + L1MC1 LINE L1 6265 6719 -8 189 266 47 31 chr6 167139435 167139499 -15275743 - MIR SINE MIR -180 82 18 2155 92 18 0 chr6 167139707 167139990 -15275252 + AluSx SINE Alu 1 288 -24 30 27 0 0 chr6 167139991 167140028 -15275214 + AT_rich Low_complexity Low_complexity 1 37 0 1027 264 153 27 chr6 167140068 167140519 -15274723 - MLT1H LTR MaLR 0 549 42 396 264 77 80 chr6 167140608 167140907 -15274335 - MLT1H-int LTR MaLR -71 1300 1003 299 311 19 10 chr6 167141120 167141223 -15274019 - MLT1H-int LTR MaLR -478 893 790 254 266 21 21 chr6 167141440 167141534 -15273708 - MLT1H-int LTR MaLR -1641 94 1 398 203 13 0 chr6 167141544 167141623 -15273619 + L1M4 LINE L1 4856 4935 -1211 273 222 12 62 chr6 167141627 167141708 -15273534 - MLT1H LTR MaLR -25 530 454 622 264 82 41 chr6 167141736 167142020 -15273222 - MLT1H LTR MaLR -254 276 31 22 0 0 0 chr6 167142537 167142559 -15272683 + AT_rich Low_complexity Low_complexity 1 22 0 975 171 152 0 chr6 167143228 167143445 -15271797 + L1MB2 LINE L1 5921 6170 -1 591 299 128 36 chr6 167143911 167144192 -15271050 + L2 LINE L2 2966 3272 0 1914 160 10 7 chr6 167144859 167145159 -15270083 - AluSx SINE Alu -11 301 1 734 232 102 102 chr6 167146083 167146505 -15268737 - MLT1F LTR MaLR -107 435 14 453 36 0 0 chr6 167146513 167146568 -15268674 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 209 151 19 0 chr6 167146578 167146631 -15268611 + (TA)n Simple_repeat Simple_repeat 1 54 0 341 247 0 12 chr6 167146692 167146777 -15268465 - MIR SINE MIR -99 163 80 233 254 24 127 chr6 167146828 167146954 -15268288 - L2 LINE L2 -15 3298 3186 195 68 23 45 chr6 167147910 167147954 -15267288 + (TCTCC)n Simple_repeat Simple_repeat 2 44 0 29 47 0 0 chr6 167148706 167148749 -15266493 + GC_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr6 167148945 167148981 -15266261 + GC_rich Low_complexity Low_complexity 1 36 0 212 330 142 0 chr6 167149791 167149897 -15265345 - L2 LINE L2 -218 3054 2934 316 254 136 0 chr6 167150471 167150581 -15264661 + L1ME4a LINE L1 5772 5896 -225 332 259 71 0 chr6 167150590 167150702 -15264540 + L1ME4a LINE L1 5974 6093 -28 363 291 34 40 chr6 167150873 167151021 -15264221 + MIR SINE MIR 68 214 -48 513 250 79 0 chr6 167151129 167151269 -15263973 + MLT1I LTR MaLR 1 151 -258 515 271 73 0 chr6 167151333 167151484 -15263758 + MLT1I LTR MaLR 248 409 0 397 244 100 44 chr6 167151484 167151644 -15263598 + MIR SINE MIR 69 237 -25 342 0 0 0 chr6 167152143 167152181 -15263061 + (TG)n Simple_repeat Simple_repeat 1 38 0 709 268 162 18 chr6 167153380 167153664 -15261578 + Charlie2 DNA MER1_type 1 325 -2537 1876 164 7 81 chr6 167153683 167154091 -15261151 - MLT1B LTR MaLR -12 378 1 994 148 31 179 chr6 167154091 167154449 -15260793 + Charlie2 DNA MER1_type 1879 2183 -679 1074 78 0 0 chr6 167154461 167154603 -15260639 + AluSp/q SINE Alu 168 309 -4 2342 198 57 7 chr6 167154608 167155184 -15260058 + Charlie2 DNA MER1_type 2255 2859 -3 2038 116 30 3 chr6 167155268 167155569 -15259673 - AluSx SINE Alu -1 311 3 3487 166 14 31 chr6 167155698 167156349 -15258893 + L1MB2 LINE L1 5426 6065 -106 1143 217 9 0 chr6 167156353 167156570 -15258672 + AluJo SINE Alu 3 221 -91 719 116 50 0 chr6 167156609 167156730 -15258512 + L1MB3 LINE L1 6050 6176 -7 441 288 53 0 chr6 167156759 167156891 -15258351 + MIR SINE MIR 50 188 -74 642 293 118 11 chr6 167156921 167157293 -15257949 + LTR16A LTR ERVL 28 439 -11 573 286 180 35 chr6 167157293 167157645 -15257597 + L2 LINE L2 2726 3166 -147 2062 98 9 67 chr6 167157645 167157972 -15257270 - AluSc SINE Alu -1 308 1 573 286 180 35 chr6 167157972 167158145 -15257097 + L2 LINE L2 3166 3313 0 411 333 55 14 chr6 167159110 167159329 -15255913 - MIR SINE MIR -33 229 2 192 246 53 18 chr6 167159849 167159906 -15255336 - MIR SINE MIR -99 163 105 231 266 16 0 chr6 167162533 167162597 -15252645 + GA-rich Low_complexity Low_complexity 3 67 0 1976 102 75 17 chr6 167162600 167162895 -15252347 + AluSx SINE Alu 1 312 0 182 171 98 0 chr6 167162917 167162958 -15252284 + L2 LINE L2 3220 3264 -8 1574 152 18 76 chr6 167164434 167164560 -15250682 + AluJo SINE Alu 3 135 -177 2215 112 3 0 chr6 167164560 167164854 -15250388 - AluSq SINE Alu -18 295 1 1574 152 18 76 chr6 167164854 167165056 -15250186 + AluJo SINE Alu 135 312 0 317 294 42 87 chr6 167166593 167166649 -15248593 - L3 LINE CR1 -187 1390 1333 2341 90 0 26 chr6 167166649 167166960 -15248282 - AluSq SINE Alu -10 303 1 317 294 42 87 chr6 167166960 167167168 -15248074 - L3 LINE CR1 -244 1333 1138 * 629 330 43 86 chr6 167167157 167167621 -15247621 - L2 LINE L2 -1 3271 2828 1822 91 0 4 chr6 167167645 167167887 -15247355 + AluSg SINE Alu 64 304 -6 2345 96 23 0 chr6 167168176 167168479 -15246763 - AluSx SINE Alu -2 310 1 1479 145 24 121 chr6 167168713 167169044 -15246198 + AluJo SINE Alu 9 307 -5 285 230 248 0 chr6 167169304 167169417 -15245825 - MIR SINE MIR -3 259 119 * 370 219 14 0 chr6 167169413 167169486 -15245756 + MIR SINE MIR 189 262 0 253 262 118 21 chr6 167169496 167169590 -15245652 - MIR SINE MIR -103 105 13 2280 104 3 0 chr6 167169733 167170032 -15245210 - AluSx SINE Alu -12 300 1 722 286 71 0 chr6 167170088 167170284 -15244958 + MER63A DNA MER1_type 1 210 0 227 368 0 0 chr6 167170380 167170456 -15244786 + HAL1 LINE L1 3 78 -2429 247 179 0 0 chr6 167170632 167170671 -15244571 - MSTA LTR MaLR 0 428 390 2169 105 21 0 chr6 167170671 167170957 -15244285 + AluSx SINE Alu 1 292 -20 356 270 25 99 chr6 167171055 167171343 -15243899 + L1MEd LINE L1 688 941 -5178 2098 142 0 3 chr6 167171343 167171654 -15243588 + AluSx SINE Alu 1 310 -2 356 270 25 99 chr6 167171654 167171757 -15243485 + L1MEd LINE L1 941 1050 -5069 1387 151 43 26 chr6 167171947 167172097 -15243145 + Tigger3(Golem) DNA MER2_type 1 158 -1073 243 0 0 0 chr6 167172097 167172124 -15243118 + (TG)n Simple_repeat Simple_repeat 1 27 0 1387 151 43 26 chr6 167172124 167172205 -15243037 + Tigger3(Golem) DNA MER2_type 158 236 -995 481 323 38 98 chr6 167172209 167172636 -15242606 + HAL1 LINE L1 1298 1698 -809 1589 118 99 19 chr6 167172637 167172928 -15242314 + AluSx SINE Alu 1 312 0 23 0 0 0 chr6 167173213 167173236 -15242006 + AT_rich Low_complexity Low_complexity 1 23 0 1911 163 19 3 chr6 167173531 167173838 -15241404 + AluJb SINE Alu 1 312 0 201 147 0 0 chr6 167173966 167174000 -15241242 + (GGA)n Simple_repeat Simple_repeat 3 36 0 2280 93 3 3 chr6 167174245 167174536 -15240706 + AluSg SINE Alu 1 291 -19 1584 154 42 18 chr6 167174801 167175087 -15240155 - AluJb SINE Alu -7 305 13 353 151 0 14 chr6 167175145 167175218 -15240024 + GA-rich Low_complexity Low_complexity 2 73 0 366 202 154 19 chr6 167175718 167175822 -15239420 - L1ME2 LINE L1 0 6164 6047 843 243 64 31 chr6 167176849 167177184 -15238058 + L1ME4a LINE L1 5299 5642 -528 231 36 0 0 chr6 167177192 167177220 -15238022 + (CA)n Simple_repeat Simple_repeat 2 29 0 259 178 31 155 chr6 167177275 167177404 -15237838 + L1MC4 LINE L1 7836 7948 -94 672 299 62 9 chr6 167177420 167177644 -15237598 + MIR SINE MIR 27 262 0 2037 81 44 7 chr6 167177701 167177997 -15237245 + AluY SINE Alu 1 307 -4 1298 108 0 0 chr6 167177997 167178163 -15237079 + AluSg/x SINE Alu 134 299 -13 352 273 67 18 chr6 167178176 167178341 -15236901 + L1ME4a LINE L1 5698 5870 -251 22 0 0 0 chr6 167178353 167178375 -15236867 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 167178387 167178408 -15236834 + AT_rich Low_complexity Low_complexity 1 21 0 193 220 17 25 chr6 167178434 167178552 -15236690 + (TA)n Simple_repeat Simple_repeat 1 117 0 271 224 56 98 chr6 167178581 167178724 -15236518 + L1ME4a LINE L1 5961 6097 -24 * 415 246 91 64 chr6 167178713 167178896 -15236346 + L1ME LINE L1 5541 5732 -430 1638 190 7 7 chr6 167178896 167179191 -15236051 + AluJo SINE Alu 1 295 -17 415 246 91 64 chr6 167179191 167179227 -15236015 + L1ME LINE L1 5732 5766 -396 719 190 0 22 chr6 167179602 167179739 -15235503 - FRAM SINE Alu 0 40 1 30 27 0 0 chr6 167179812 167179849 -15235393 + AT_rich Low_complexity Low_complexity 1 37 0 182 71 0 71 chr6 167180615 167180657 -15234585 + (T)n Simple_repeat Simple_repeat 1 39 0 1989 97 9 64 chr6 167180665 167180995 -15234247 - AluSx SINE Alu 0 312 1 267 190 0 0 chr6 167181796 167181854 -15233388 + (CA)n Simple_repeat Simple_repeat 2 59 0 2351 96 0 0 chr6 167183333 167183662 -15231580 - AluSx SINE Alu 0 329 1 2090 90 6 42 chr6 167184195 167184507 -15230735 + AluY SINE Alu 5 305 -6 2189 81 0 75 chr6 167184512 167184834 -15230408 + AluSx SINE Alu 1 298 -14 2359 101 39 72 chr6 167185187 167185525 -15229717 - THE1C LTR MaLR -2 373 25 2142 111 7 0 chr6 167185525 167185814 -15229428 + AluSg SINE Alu 5 295 -15 2083 125 3 7 chr6 167185815 167186112 -15229130 + AluSp SINE Alu 1 296 -17 2359 101 39 72 chr6 167186112 167186157 -15229085 - THE1C LTR MaLR -349 26 1 1865 169 0 13 chr6 167186563 167186870 -15228372 + AluJo SINE Alu 3 305 -7 2033 128 0 0 chr6 167186874 167187162 -15228080 - AluSp SINE Alu -15 298 11 23 54 0 0 chr6 167187499 167187536 -15227706 + AT_rich Low_complexity Low_complexity 1 37 0 2044 128 0 0 chr6 167187623 167187925 -15227317 - AluSx SINE Alu 0 304 3 3658 208 12 52 chr6 167189904 167190496 -15224746 - L1ME1 LINE L1 -5 6161 5614 1812 149 14 0 chr6 167190496 167190778 -15224464 + AluJo SINE Alu 1 286 -26 3658 208 12 52 chr6 167190778 167191070 -15224172 - L1ME1 LINE L1 -552 5614 5312 1592 174 23 0 chr6 167191081 167191340 -15223902 + AluJb SINE Alu 3 267 -45 1520 123 0 25 chr6 167191730 167191966 -15223276 + AluJo SINE Alu 30 259 -53 186 43 0 0 chr6 167191984 167192007 -15223235 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 872 224 110 9 chr6 167194537 167194756 -15220486 + MIR SINE MIR 20 260 -2 279 0 0 0 chr6 167194808 167194839 -15220403 + (TG)n Simple_repeat Simple_repeat 2 32 0 2098 104 7 0 chr6 167194840 167195119 -15220123 - AluSx SINE Alu -31 281 1 2048 146 7 0 chr6 167195445 167195753 -15219489 - AluSx SINE Alu -2 310 1 356 241 184 6 chr6 167197360 167197518 -15217724 - MER5A DNA MER1_type 0 189 4 2037 117 4 0 chr6 167197534 167197850 -15217392 - AluSx SINE Alu 0 317 1 1978 110 40 10 chr6 167197998 167198299 -15216943 + AluSg SINE Alu 1 310 0 302 276 61 0 chr6 167199362 167199460 -15215782 + L1MC4 LINE L1 6599 6702 -1340 909 234 29 73 chr6 167200058 167200353 -15214889 - MLT1B LTR MaLR 0 390 84 2277 103 0 0 chr6 167200353 167200645 -15214597 - AluSg SINE Alu -18 292 1 909 234 29 73 chr6 167200645 167200699 -15214543 - MLT1B LTR MaLR -306 84 29 2615 39 0 7 chr6 167200699 167201008 -15214234 - AluY SINE Alu -4 307 1 2292 98 3 0 chr6 167201008 167201305 -15213937 - AluSp SINE Alu -15 298 1 909 234 29 73 chr6 167201305 167201392 -15213850 - MLT1B LTR MaLR -255 135 46 2093 181 49 96 chr6 167201404 167201936 -15213306 - MLT2B1 LTR ERVL -13 507 1 596 239 77 82 chr6 167202045 167202484 -15212758 + L1MEd LINE L1 692 1128 -4991 285 254 18 53 chr6 167202647 167202761 -15212481 + L1MEd LINE L1 2719 2828 -3301 370 49 33 0 chr6 167202852 167202913 -15212329 + (TA)n Simple_repeat Simple_repeat 1 63 0 1780 131 98 0 chr6 167202977 167203252 -15211990 - AluSx SINE Alu -10 302 1 1271 162 19 72 chr6 167203800 167203945 -15211297 + AluJo SINE Alu 3 129 -183 2186 120 3 0 chr6 167203945 167204246 -15210996 + AluSq SINE Alu 1 302 -11 1271 162 19 72 chr6 167204246 167204365 -15210877 + AluJo SINE Alu 129 253 -59 2212 95 0 3 chr6 167204434 167204748 -15210494 + AluSx SINE Alu 1 313 0 24 0 0 0 chr6 167205937 167205961 -15209281 + AT_rich Low_complexity Low_complexity 1 24 0 2225 124 0 6 chr6 167206054 167206368 -15208874 + AluSx SINE Alu 1 312 0 25 31 0 0 chr6 167206398 167206430 -15208812 + AT_rich Low_complexity Low_complexity 1 32 0 367 274 139 68 chr6 167207613 167207914 -15207328 + L1MC4a LINE L1 5390 5743 -2065 2286 114 3 0 chr6 167207914 167208211 -15207031 - AluSq SINE Alu -14 299 2 367 274 139 68 chr6 167208211 167208412 -15206830 + L1MC4a LINE L1 5743 5928 -1880 23 0 0 0 chr6 167208566 167208589 -15206653 + AT_rich Low_complexity Low_complexity 1 23 0 1598 204 3 19 chr6 167210629 167210938 -15204304 + AluJo SINE Alu 1 304 -8 253 281 93 52 chr6 167211035 167211305 -15203937 + L1 LINE L1 4738 5018 -1128 2320 58 51 3 chr6 167211352 167211646 -15203596 - AluY SINE Alu -3 308 1 2359 74 7 0 chr6 167211793 167212102 -15203140 - AluY SINE Alu 0 311 1 1843 157 0 11 chr6 167212213 167212538 -15202704 - AluJb SINE Alu 0 322 1 1141 81 44 12 chr6 167212748 167212908 -15202334 + L1PA10 LINE L1 5999 6163 -5 525 323 74 36 chr6 167212951 167213548 -15201694 - L1MEc LINE L1 -3606 2523 1948 347 154 0 0 chr6 167214670 167214735 -15200507 + MER69 DNA AcHobo 2089 2153 -373 728 207 7 14 chr6 167214742 167214882 -15200360 + FAM SINE Alu 33 171 -14 981 203 37 109 chr6 167214884 167215289 -15199953 + MER69 DNA AcHobo 2140 2515 -11 1534 203 10 33 chr6 167215332 167215632 -15199610 + AluJo SINE Alu 3 295 -7 2054 155 3 0 chr6 167215632 167215935 -15199307 - AluSx SINE Alu -8 304 1 2828 145 106 0 chr6 167216033 167216516 -15198726 + Tigger3b DNA MER2_type 32 565 -666 2143 127 7 0 chr6 167216527 167216835 -15198407 - AluSp SINE Alu -3 310 1 1305 187 0 49 chr6 167216877 167217074 -15198168 + AluJo SINE Alu 1 206 -106 194 62 31 0 chr6 167217074 167217106 -15198136 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2172 109 0 40 chr6 167217108 167217412 -15197830 - AluSx SINE Alu -20 292 1 1305 187 0 49 chr6 167217412 167217478 -15197764 + AluJo SINE Alu 207 254 -58 501 132 123 0 chr6 167217554 167217668 -15197574 + Tigger3b DNA MER2_type 566 693 -538 1514 188 0 11 chr6 167217669 167217945 -15197297 + AluJo SINE Alu 1 273 -39 2237 118 0 3 chr6 167217946 167218243 -15196999 - AluSx SINE Alu -12 300 5 203 138 0 0 chr6 167218252 167218281 -15196961 + (GA)n Simple_repeat Simple_repeat 2 30 0 670 164 23 23 chr6 167218284 167218455 -15196787 + GA-rich Low_complexity Low_complexity 4 174 0 497 225 17 12 chr6 167218485 167218658 -15196584 + GA-rich Low_complexity Low_complexity 1 174 0 3107 138 47 4 chr6 167218674 167219182 -15196060 + Tigger3b DNA MER2_type 703 1232 0 2237 120 0 0 chr6 167219304 167219604 -15195638 + AluSc SINE Alu 1 300 -9 286 279 36 21 chr6 167219722 167219862 -15195380 - L1MEc LINE L1 -4946 1364 1223 24 32 0 0 chr6 167219871 167219902 -15195340 + AT_rich Low_complexity Low_complexity 1 31 0 1067 286 77 46 chr6 167220146 167220373 -15194869 - L1ME3A LINE L1 -220 5950 5731 2130 116 3 28 chr6 167220373 167220693 -15194549 + AluSx SINE Alu 1 312 0 1067 286 77 46 chr6 167220693 167221052 -15194190 - L1ME3A LINE L1 -439 5731 5346 976 266 15 6 chr6 167221057 167221396 -15193846 - L1ME3A LINE L1 -842 5304 4963 411 255 44 26 chr6 167221675 167221946 -15193296 + L1M4 LINE L1 3125 3400 -2746 291 217 113 52 chr6 167222091 167222206 -15193036 - L1MEc LINE L1 -4935 1184 1063 1175 153 6 0 chr6 167222208 167222391 -15192851 - AluSg/x SINE Alu -5 304 121 2565 50 0 31 chr6 167223052 167223372 -15191870 + AluY SINE Alu 2 311 0 631 171 7 14 chr6 167223393 167223533 -15191709 + GA-rich Low_complexity Low_complexity 2 140 0 2175 67 14 21 chr6 167223921 167224203 -15191039 - AluSq SINE Alu -32 281 2 383 335 44 6 chr6 167224204 167224362 -15190880 + MIR SINE MIR 88 251 -11 29 60 0 0 chr6 167224847 167224897 -15190345 + AT_rich Low_complexity Low_complexity 1 50 0 2065 120 3 0 chr6 167225182 167225508 -15189734 + AluSx SINE Alu 1 327 0 2298 116 0 0 chr6 167225994 167226304 -15188938 + AluSx SINE Alu 1 310 -2 200 329 131 7 chr6 167226687 167226824 -15188418 - L2 LINE L2 -211 3061 2908 1752 162 0 26 chr6 167227679 167227981 -15187261 - AluJb SINE Alu -10 302 9 213 316 11 32 chr6 167228164 167228259 -15186983 + CT-rich Low_complexity Low_complexity 2 94 0 378 0 0 0 chr6 167229158 167229200 -15186042 + (CA)n Simple_repeat Simple_repeat 2 43 0 335 335 90 24 chr6 167229224 167229391 -15185851 - MIR SINE MIR -36 226 49 186 169 70 84 chr6 167229502 167229573 -15185669 - L3b LINE CR1 -390 1193 1124 1587 166 37 4 chr6 167230201 167230472 -15184770 - AluJb SINE Alu -32 280 1 1870 167 0 7 chr6 167230514 167230813 -15184429 - AluJb SINE Alu -15 297 1 346 355 14 0 chr6 167231075 167231216 -15184026 - MIR SINE MIR -2 260 118 201 74 0 0 chr6 167231312 167231339 -15183903 + (A)n Simple_repeat Simple_repeat 1 27 0 368 163 20 71 chr6 167231366 167231464 -15183778 - MLT1J LTR MaLR -44 467 375 430 213 31 63 chr6 167231489 167231616 -15183626 - MLT1J LTR MaLR -385 126 4 1830 174 0 3 chr6 167232322 167232615 -15182627 - AluJb SINE Alu -20 292 1 613 287 61 0 chr6 167232898 167233062 -15182180 - MER91A DNA MER1_type -3 193 20 251 331 82 85 chr6 167233748 167234126 -15181116 + L2 LINE L2 2894 3270 -2 26 74 0 0 chr6 167238003 167238057 -15177185 + AT_rich Low_complexity Low_complexity 1 54 0 222 150 0 0 chr6 167238836 167238876 -15176366 + (CCCCAG)n Simple_repeat Simple_repeat 6 45 0 29 0 0 0 chr6 167238895 167238924 -15176318 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 167239272 167239309 -15175933 + GC_rich Low_complexity Low_complexity 1 37 0 237 65 0 0 chr6 167239323 167239354 -15175888 + (CGG)n Simple_repeat Simple_repeat 2 32 0 38 68 0 0 chr6 167239354 167239427 -15175815 + GC_rich Low_complexity Low_complexity 1 73 0 218 152 38 13 chr6 167239434 167239513 -15175729 + (CGG)n Simple_repeat Simple_repeat 2 82 0 25 0 0 0 chr6 167239572 167239597 -15175645 + GC_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr6 167239663 167239684 -15175558 + (TCC)n Simple_repeat Simple_repeat 1 21 0 384 123 0 0 chr6 167239800 167239873 -15175369 + (CCA)n Simple_repeat Simple_repeat 3 75 0 441 54 0 0 chr6 167239900 167239956 -15175286 + (CAG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chr6 167239980 167240004 -15175238 + GC_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr6 167240196 167240240 -15175002 + GC_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr6 167240282 167240304 -15174938 + GC_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 167240369 167240395 -15174847 + GC_rich Low_complexity Low_complexity 1 26 0 229 65 0 0 chr6 167240472 167240503 -15174739 + (CGG)n Simple_repeat Simple_repeat 1 31 0 390 94 0 0 chr6 167240503 167240567 -15174675 + (GGA)n Simple_repeat Simple_repeat 1 64 0 388 162 0 14 chr6 167240567 167240641 -15174601 + (CGG)n Simple_repeat Simple_repeat 1 73 0 25 0 0 0 chr6 167240700 167240725 -15174517 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 167240736 167240764 -15174478 + GC_rich Low_complexity Low_complexity 1 28 0 201 39 0 0 chr6 167240928 167240954 -15174288 + (CGG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr6 167241510 167241531 -15173711 + AT_rich Low_complexity Low_complexity 1 21 0 34 72 0 0 chr6 167241629 167241698 -15173544 + AT_rich Low_complexity Low_complexity 1 69 0 261 0 0 0 chr6 167244234 167244263 -15170979 + (T)n Simple_repeat Simple_repeat 1 29 0 2105 132 0 0 chr6 167247021 167247317 -15167925 - AluJb SINE Alu -15 297 2 767 154 19 45 chr6 167247787 167247943 -15167299 - L1MB3 LINE L1 0 6183 6032 23 0 0 0 chr6 167248398 167248421 -15166821 + AT_rich Low_complexity Low_complexity 1 23 0 201 308 0 0 chr6 167251666 167251718 -15163524 - L2 LINE L2 -14 3299 3248 493 229 55 71 chr6 167251939 167252122 -15163120 + MIR SINE MIR 9 188 -74 703 173 0 9 chr6 167254580 167254690 -15160552 + FLAM_C SINE Alu 2 110 -33 1454 203 38 3 chr6 167255605 167255895 -15159347 - AluJo SINE Alu -12 300 1 321 282 168 13 chr6 167256106 167256255 -15158987 - MIR SINE MIR 0 262 91 233 284 193 18 chr6 167256302 167256411 -15158831 - MER5A DNA MER1_type -1 188 61 1633 151 0 22 chr6 167256499 167256771 -15158471 - AluJo SINE Alu -3 309 44 1769 137 19 32 chr6 167256826 167257141 -15158101 - AluJb SINE Alu -1 311 1 429 226 69 0 chr6 167259393 167259495 -15155747 - L2 LINE L2 -18 3295 3187 186 306 91 66 chr6 167260673 167260794 -15154448 - MIR SINE MIR -116 146 23 304 253 414 11 chr6 167261439 167261625 -15153617 - MIR SINE MIR 0 262 2 1957 123 7 3 chr6 167261751 167262036 -15153206 - AluSx SINE Alu -26 286 1 686 203 13 106 chr6 167262502 167262566 -15152676 - MER3 DNA MER1_type -2 207 139 2027 156 3 0 chr6 167262566 167262874 -15152368 + AluSx SINE Alu 1 309 -3 1905 128 43 7 chr6 167262883 167263165 -15152077 + AluJo SINE Alu 1 292 -20 686 203 13 106 chr6 167263165 167263317 -15151925 - MER3 DNA MER1_type -78 131 2 2151 106 3 7 chr6 167263455 167263757 -15151485 - AluSg1 SINE Alu -8 301 1 27 81 0 0 chr6 167264712 167264774 -15150468 + AT_rich Low_complexity Low_complexity 1 62 0 218 246 31 0 chr6 167265102 167265167 -15150075 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 183 42 0 0 chr6 167265663 167265687 -15149555 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 189 196 0 0 chr6 167265860 167265906 -15149336 + T-rich Low_complexity Low_complexity 1 46 0 342 368 22 0 chr6 167266103 167266239 -15149003 + MIR SINE MIR 117 255 -7 2200 115 3 3 chr6 167266312 167266616 -15148626 + AluSx SINE Alu 1 304 -8 2415 120 53 8 chr6 167266679 167267038 -15148204 - THE1C LTR MaLR 0 375 1 213 39 0 0 chr6 167267126 167267152 -15148090 + (A)n Simple_repeat Simple_repeat 1 26 0 359 270 0 61 chr6 167267597 167267712 -15147530 + MIR SINE MIR 118 225 -37 34 0 0 0 chr6 167267940 167267974 -15147268 + AT_rich Low_complexity Low_complexity 1 34 0 1460 201 0 4 chr6 167267981 167268235 -15147007 - AluJo SINE Alu -59 253 1 228 316 163 0 chr6 167268817 167268915 -15146327 - MIR SINE MIR -70 192 79 1537 209 45 21 chr6 167269020 167269351 -15145891 - MER58B DNA MER1_type -2 339 1 204 40 0 0 chr6 167271968 167271993 -15143249 + (A)n Simple_repeat Simple_repeat 1 25 0 252 303 29 4 chr6 167272571 167272693 -15142549 - MIR3 SINE MIR -3 205 79 198 338 40 14 chr6 167272888 167272962 -15142280 - L2 LINE L2 -209 3063 2988 1393 273 135 24 chr6 167273109 167273641 -15141601 - MLT1E LTR MaLR 0 593 3 1215 196 83 111 chr6 167273687 167274084 -15141158 - MLT1B LTR MaLR -4 386 1 337 328 58 12 chr6 167274189 167274360 -15140882 + MIR SINE MIR 84 262 0 1256 154 51 0 chr6 167274405 167274600 -15140642 - AluJb SINE Alu -27 285 81 324 0 0 0 chr6 167275192 167275228 -15140014 + (TG)n Simple_repeat Simple_repeat 2 37 0 230 178 0 0 chr6 167275228 167275273 -15139969 + LTR66 LTR ERVL 394 438 -172 294 244 23 0 chr6 167275274 167275360 -15139882 - L1MC4 LINE L1 -1341 6701 6614 1882 126 10 36 chr6 167275367 167275669 -15139573 - AluSx SINE Alu -16 296 3 1672 131 66 18 chr6 167276397 167276671 -15138571 + AluJb SINE Alu 6 292 -20 248 326 11 0 chr6 167278199 167278288 -15136954 + MER103 DNA DNA 32 121 -45 185 304 0 0 chr6 167278474 167278520 -15136722 - L2 LINE L2 -3 3269 3224 22 35 0 0 chr6 167279505 167279534 -15135708 + AT_rich Low_complexity Low_complexity 1 29 0 1490 104 181 24 chr6 167279534 167279783 -15135459 + AluSx SINE Alu 1 288 -24 1770 152 31 17 chr6 167279785 167280075 -15135167 + AluJo SINE Alu 1 294 -18 1251 211 16 82 chr6 167280090 167280470 -15134772 - L1MC4 LINE L1 -1 8041 7687 234 0 0 0 chr6 167280530 167280556 -15134686 + (T)n Simple_repeat Simple_repeat 1 26 0 354 333 26 0 chr6 167280982 167281099 -15134143 - MIR SINE MIR -96 166 47 398 291 44 6 chr6 167281140 167281298 -15133944 + MER117 DNA MER1_type 3 166 -31 277 338 56 25 chr6 167281394 167281554 -15133688 - MIR SINE MIR -44 218 54 237 254 0 15 chr6 167282212 167282279 -15132963 - L2 LINE L2 -254 3059 2994 332 303 90 0 chr6 167282807 167282896 -15132346 - L2 LINE L2 -38 3234 3138 256 293 49 12 chr6 167283061 167283143 -15132099 - MIR SINE MIR -154 108 24 395 314 74 68 chr6 167283390 167283686 -15131556 + L3 LINE CR1 597 894 -683 270 275 88 0 chr6 167283866 167283957 -15131285 + L3 LINE CR1 1294 1392 -185 974 128 0 0 chr6 167284442 167284575 -15130667 - AluSq/x SINE Alu -179 133 1 182 261 23 68 chr6 167284828 167284916 -15130326 + MIR3 SINE MIR 15 98 -110 255 303 182 12 chr6 167285708 167285873 -15129369 - MIR SINE MIR -47 215 23 2249 121 0 0 chr6 167286914 167287219 -15128023 + AluSx SINE Alu 1 305 -7 2094 120 3 10 chr6 167287368 167287669 -15127573 - AluSx SINE Alu -13 299 1 467 292 105 61 chr6 167288747 167289024 -15126218 + L2 LINE L2 2980 3268 -4 356 188 0 75 chr6 167289539 167289619 -15125623 - L2 LINE L2 -37 3276 3203 236 273 43 50 chr6 167289631 167289770 -15125472 + L2 LINE L2 2224 2361 -953 2366 95 16 0 chr6 167290259 167290565 -15124677 - AluSx SINE Alu -1 311 1 1327 148 18 14 chr6 167290567 167290790 -15124452 - AluJo SINE Alu -13 299 76 283 348 59 29 chr6 167292836 167293040 -15122202 - L3b LINE CR1 -158 1425 1216 31 76 0 0 chr6 167293064 167293130 -15122112 + AT_rich Low_complexity Low_complexity 1 66 0 811 142 50 0 chr6 167293155 167293275 -15121967 + FLAM_A SINE Alu 5 130 -3 2313 65 3 23 chr6 167297457 167297766 -15117476 + AluY SINE Alu 1 303 -8 1488 140 14 5 chr6 167298246 167298468 -15116774 - AluJb SINE Alu -12 300 77 258 209 67 76 chr6 167298719 167298824 -15116418 + MER5B DNA MER1_type 2 105 -73 222 191 162 0 chr6 167298889 167298957 -15116285 + MER5A DNA MER1_type 32 110 -79 285 254 119 52 chr6 167298979 167299113 -15116129 + MIR3 SINE MIR 28 170 -38 1883 161 7 3 chr6 167299170 167299468 -15115774 - AluJb SINE Alu -13 299 1 22 70 0 0 chr6 167299630 167299673 -15115569 + AT_rich Low_complexity Low_complexity 1 43 0 203 0 37 0 chr6 167300625 167300652 -15114590 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 1347 64 0 17 chr6 167301052 167301249 -15113993 + L1PA6 LINE L1 5977 6154 0 1175 190 86 31 chr6 167301648 167302003 -15113239 - MSTC LTR MaLR 0 428 6 254 313 12 0 chr6 167302419 167302502 -15112740 - LTR67 LTR ERVL -396 161 78 181 264 88 44 chr6 167302879 167302970 -15112272 + L2 LINE L2 3179 3273 -40 191 179 54 36 chr6 167303999 167304055 -15111187 + MIR3 SINE MIR 106 162 -46 663 283 19 47 chr6 167304165 167304377 -15110865 - MIR SINE MIR 0 262 57 3573 168 25 7 chr6 167304617 167305224 -15110018 - L1MB5 LINE L1 -9 6165 5548 446 272 117 6 chr6 167305254 167305416 -15109826 - MIR SINE MIR -13 249 70 698 222 54 44 chr6 167305475 167305846 -15109396 - MER113 DNA MER1_type? -14 507 87 21 57 0 0 chr6 167306142 167306177 -15109065 + AT_rich Low_complexity Low_complexity 1 35 0 583 233 60 80 chr6 167307239 167307540 -15107702 - HAL1 LINE L1 -326 2181 1887 1127 250 157 31 chr6 167307828 167308439 -15106803 - HAL1 LINE L1 -687 1820 1133 365 300 75 36 chr6 167308444 167308651 -15106591 - HAL1 LINE L1 -1416 1091 867 2280 85 3 38 chr6 167308651 167308968 -15106274 - AluSg SINE Alu -4 306 1 365 300 75 36 chr6 167308968 167309067 -15106175 - HAL1 LINE L1 -1640 867 773 480 245 58 75 chr6 167309446 167309634 -15105608 - HAL1 LINE L1 -2319 188 4 1603 161 10 52 chr6 167314670 167314980 -15100262 + AluJo SINE Alu 1 297 -15 266 183 11 108 chr6 167316189 167316238 -15099004 + MIR SINE MIR 123 160 -102 1721 173 17 7 chr6 167316238 167316538 -15098704 - AluJo SINE Alu -9 303 1 266 183 11 108 chr6 167316538 167316581 -15098661 + MIR SINE MIR 160 206 -56 21 36 0 0 chr6 167318067 167318095 -15097147 + AT_rich Low_complexity Low_complexity 1 28 0 242 208 0 0 chr6 167318204 167318257 -15096985 + (TG)n Simple_repeat Simple_repeat 2 54 0 247 265 0 0 chr6 167318576 167318644 -15096598 + MIR SINE MIR 159 226 -36 617 261 136 17 chr6 167318833 167319087 -15096155 - MIR SINE MIR -1 261 2 261 0 0 0 chr6 167319177 167319206 -15096036 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 378 0 0 0 chr6 167319205 167319247 -15095995 + (CA)n Simple_repeat Simple_repeat 1 42 0 428 287 37 30 chr6 167319595 167319759 -15095483 - MIR SINE MIR -43 219 55 1686 158 15 0 chr6 167320208 167320474 -15094768 - MER7C DNA MER2_type 0 603 334 2904 146 28 37 chr6 167320474 167320988 -15094254 + L1MA4 LINE L1 5738 6248 -52 2046 147 0 10 chr6 167320988 167321300 -15093942 + AluSx SINE Alu 1 309 -3 2904 146 28 37 chr6 167321300 167321353 -15093889 + L1MA4 LINE L1 6248 6300 0 1433 165 47 4 chr6 167321367 167321621 -15093621 - MER7C DNA MER2_type -283 319 55 1171 72 7 7 chr6 167321623 167321776 -15093466 - AluY SINE Alu -17 294 142 463 154 0 0 chr6 167321778 167321843 -15093399 - MER7C DNA MER2_type -537 65 1 1703 159 0 34 chr6 167323823 167324151 -15091091 + AluJb SINE Alu 1 318 0 198 274 130 55 chr6 167324538 167324684 -15090558 - L2 LINE L2 -925 2389 2233 291 301 35 0 chr6 167324711 167324824 -15090418 - MER5B DNA MER1_type 0 178 62 2648 247 227 41 chr6 167326999 167329041 -15086201 - HAL1 LINE L1 -2 2505 84 2085 171 17 8 chr6 167330897 167331259 -15083983 - MLT1A1 LTR MaLR 0 365 1 233 225 38 88 chr6 167333731 167333811 -15081431 + L2 LINE L2 3168 3243 -29 369 298 61 30 chr6 167333979 167334110 -15081132 - MIR SINE MIR -125 137 3 234 260 233 27 chr6 167334617 167334767 -15080475 + MIR SINE MIR 69 249 -13 2008 121 7 19 chr6 167334823 167335130 -15080112 - AluSq SINE Alu -10 303 1 1635 170 40 10 chr6 167336572 167336872 -15078370 - AluJo SINE Alu -3 309 1 950 102 0 0 chr6 167339388 167339525 -15075717 - AluSc SINE Alu 0 309 173 234 276 116 84 chr6 167339619 167339930 -15075312 + L2 LINE L2 2657 2977 -337 2055 124 0 29 chr6 167340213 167340520 -15074722 - AluSx SINE Alu -14 298 1 472 256 66 0 chr6 167340734 167340871 -15074371 - LTR67 LTR ERVL 0 557 412 227 338 0 0 chr6 167341027 167341095 -15074147 - LTR67 LTR ERVL -333 224 157 215 254 90 66 chr6 167341470 167341592 -15073650 - MIR3 SINE MIR -73 135 11 2347 89 0 6 chr6 167342960 167343274 -15071968 + AluSx SINE Alu 1 312 0 211 217 0 22 chr6 167343936 167343982 -15071260 + (TATG)n Simple_repeat Simple_repeat 3 47 0 276 271 36 50 chr6 167346537 167346677 -15068565 - MER112 DNA MER1_type -6 254 117 1413 189 0 17 chr6 167348410 167348648 -15066594 + MER46A DNA MER2_type 1 234 -2 1056 132 0 0 chr6 167348720 167348864 -15066378 - AluSq SINE Alu -36 277 134 186 319 14 28 chr6 167349172 167349244 -15065998 + MIR3 SINE MIR 128 198 -10 198 182 0 0 chr6 167353300 167353333 -15061909 + L2 LINE L2 3271 3303 -10 183 42 0 0 chr6 167353382 167353406 -15061836 + (TTG)n Simple_repeat Simple_repeat 2 25 0 375 233 90 126 chr6 167354006 167354365 -15060877 - L1ME4a LINE L1 -126 5995 5654 1890 104 24 88 chr6 167354365 167354693 -15060549 - AluSc SINE Alu -2 307 1 375 233 90 126 chr6 167354693 167354779 -15060463 - L1ME4a LINE L1 -467 5654 5566 889 256 69 8 chr6 167355041 167355287 -15059955 - L1ME2 LINE L1 -2 6162 5902 4119 165 44 65 chr6 167355423 167355529 -15059713 + L1MB3 LINE L1 4941 5048 -1135 1951 127 57 17 chr6 167355529 167355829 -15059413 - AluSx SINE Alu 0 312 1 4119 165 44 65 chr6 167355829 167357005 -15058237 + L1MB3 LINE L1 5048 6182 -1 285 271 131 0 chr6 167357422 167357529 -15057713 - L2 LINE L2 -5 3267 3147 297 258 31 41 chr6 167357539 167357636 -15057606 + MER103 DNA DNA 4 99 -67 243 61 0 0 chr6 167358239 167358272 -15056970 + (CA)n Simple_repeat Simple_repeat 2 34 0 324 293 96 38 chr6 167358437 167358782 -15056460 - L1ME2 LINE L1 -217 5947 5583 2210 114 3 0 chr6 167358798 167359104 -15056138 + AluSq SINE Alu 1 307 -6 2297 96 0 0 chr6 167359106 167359399 -15055843 + AluSc SINE Alu 5 297 -12 321 26 0 0 chr6 167359684 167359722 -15055520 + (CTG)n Simple_repeat Simple_repeat 1 38 0 432 0 0 0 chr6 167359722 167359770 -15055472 + (TTC)n Simple_repeat Simple_repeat 2 49 0 2114 119 0 0 chr6 167359770 167360077 -15055165 - AluSx SINE Alu 0 307 1 24 0 0 0 chr6 167360162 167360186 -15055056 + AT_rich Low_complexity Low_complexity 1 24 0 187 152 0 87 chr6 167360464 167360510 -15054732 - L2 LINE L2 -107 3206 3165 190 175 158 0 chr6 167360638 167360695 -15054547 + L2 LINE L2 3200 3265 -7 2283 101 3 0 chr6 167361193 167361490 -15053752 + AluSp SINE Alu 1 298 -15 857 81 0 0 chr6 167365155 167365266 -15049976 + AluSc SINE Alu 196 306 -3 1166 250 119 55 chr6 167366522 167367161 -15048081 - L1MC4a LINE L1 -1675 6116 5437 1753 176 3 7 chr6 167367161 167367463 -15047779 + MER46B DNA MER2_type 1 176 -60 347 264 29 29 chr6 167367481 167367655 -15047587 - L1MC4a LINE L1 -2375 5416 5243 809 237 67 33 chr6 167367688 167367742 -15047500 - MLT2D LTR ERVL -16 381 330 312 91 0 0 chr6 167367742 167367786 -15047456 + (CA)n Simple_repeat Simple_repeat 1 44 0 809 237 67 33 chr6 167367786 167368049 -15047193 - MLT2D LTR ERVL -67 330 83 611 263 52 66 chr6 167368466 167368784 -15046458 - MER90 LTR ERV1 -7 607 293 2430 64 10 0 chr6 167368784 167369079 -15046163 + AluSp SINE Alu 16 313 0 611 263 52 66 chr6 167369079 167369125 -15046117 - MER90 LTR ERV1 -321 293 248 819 253 131 81 chr6 167369281 167370127 -15045115 - L1MC4a LINE L1 -1634 4495 3598 2064 105 36 36 chr6 167370127 167370431 -15044811 + AluSx SINE Alu 1 304 -8 819 253 131 81 chr6 167370431 167370506 -15044736 - L1MC4a LINE L1 -2531 3598 3528 844 163 0 35 chr6 167370562 167370703 -15044539 - AluJo SINE Alu -175 137 2 363 242 50 37 chr6 167370718 167370879 -15044363 - L1MC4a LINE L1 -2659 3470 3308 440 270 69 60 chr6 167370946 167371265 -15043977 - L1MC4a LINE L1 -2931 3198 2877 2326 114 0 0 chr6 167371617 167371925 -15043317 - AluSg SINE Alu 0 310 3 310 311 144 48 chr6 167371925 167372195 -15043047 - L1MC4 LINE L1 -223 7819 7524 245 218 141 0 chr6 167372212 167372290 -15042952 - L1MC5 LINE L1 -568 7393 7305 481 272 84 11 chr6 167372364 167372555 -15042687 + MLT1G LTR MaLR 363 567 -23 249 330 0 10 chr6 167372720 167372820 -15042422 - L1MC4a LINE L1 -5573 546 448 234 308 39 0 chr6 167373151 167373229 -15042013 - L1MC4a LINE L1 -6035 84 4 1781 260 30 4 chr6 167373351 167373848 -15041394 - MER20B DNA MER1_type -49 734 225 603 282 40 26 chr6 167374079 167374352 -15040890 - MER20B DNA MER1_type -79 704 428 664 289 237 40 chr6 167374777 167375406 -15039836 + L2 LINE L2 970 1722 -1592 196 400 0 0 chr6 167375438 167375518 -15039724 + L2 LINE L2 1811 1890 -1424 1699 158 30 21 chr6 167375546 167375709 -15039533 - L1MA8 LINE L1 -4 6287 6127 2331 107 0 7 chr6 167375709 167376018 -15039224 - AluSg SINE Alu -2 308 2 1699 158 30 21 chr6 167376018 167376184 -15039058 - L1MA8 LINE L1 -164 6127 5955 428 202 41 0 chr6 167376674 167376792 -15038450 - L1MA6 LINE L1 -266 6037 5904 976 306 69 47 chr6 167376792 167377384 -15037858 + L2 LINE L2 1875 2479 -835 359 232 95 0 chr6 167377436 167377531 -15037711 + L2 LINE L2 3193 3296 -17 2298 101 0 10 chr6 167377787 167378094 -15037148 + AluSx SINE Alu 1 304 -8 2101 132 0 3 chr6 167378117 167378412 -15036830 + AluSx SINE Alu 1 294 -18 974 142 7 0 chr6 167382186 167382334 -15032908 + FRAM SINE Alu 1 146 -30 1079 98 13 13 chr6 167383352 167383505 -15031737 - AluSp/q SINE Alu -5 308 156 32 0 0 0 chr6 167383794 167383826 -15031416 + AT_rich Low_complexity Low_complexity 1 32 0 495 0 0 0 chr6 167383942 167383997 -15031245 + (CA)n Simple_repeat Simple_repeat 2 56 0 219 211 0 42 chr6 167384311 167384382 -15030860 + T-rich Low_complexity Low_complexity 3 70 0 2229 114 3 0 chr6 167384677 167384975 -15030267 - AluSx SINE Alu -13 299 1 634 252 126 17 chr6 167385906 167386120 -15029122 + MIR SINE MIR 1 234 -28 1850 140 44 10 chr6 167386203 167386496 -15028746 - AluSx SINE Alu -7 305 3 206 304 49 10 chr6 167386530 167386632 -15028610 - MIR SINE MIR 0 262 157 516 109 0 143 chr6 167386662 167386781 -15028461 - Tigger7 DNA MER2_type -4 2483 2382 * 2184 142 173 22 chr6 167386752 167387209 -15028033 - Tigger7 DNA MER2_type -1961 526 1 883 186 6 0 chr6 167387869 167388025 -15027217 + FRAM SINE Alu 4 160 -16 688 169 102 131 chr6 167389040 167389200 -15026042 - L1MC5 LINE L1 -38 7923 7760 2037 109 7 3 chr6 167389200 167389483 -15025759 - AluSg SINE Alu -26 284 1 688 169 102 131 chr6 167389483 167389955 -15025287 - L1MC5 LINE L1 -201 7760 7302 189 317 79 10 chr6 167391599 167391700 -15023542 + MIR SINE MIR 123 230 -32 732 291 38 22 chr6 167392543 167392611 -15022631 + L1MC4a LINE L1 5545 5610 -2198 2514 132 34 7 chr6 167392611 167393028 -15022214 + MSTA LTR MaLR 1 428 0 732 291 38 22 chr6 167393028 167393278 -15021964 + L1MC4a LINE L1 5610 5868 -1940 2222 108 0 3 chr6 167393412 167393718 -15021524 + AluY SINE Alu 1 305 -6 1222 153 88 85 chr6 167394050 167394184 -15021058 + AluJo SINE Alu 1 133 -179 2364 88 7 0 chr6 167394184 167394489 -15020753 + AluSp SINE Alu 1 307 -6 1222 153 88 85 chr6 167394489 167394649 -15020593 + AluJo SINE Alu 133 296 -16 209 57 29 0 chr6 167396253 167396288 -15018954 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 450 0 0 0 chr6 167397416 167397466 -15017776 + (TA)n Simple_repeat Simple_repeat 1 50 0 1679 131 60 8 chr6 167397587 167397883 -15017359 - AluJo SINE Alu 0 310 1 2484 76 3 0 chr6 167398564 167398865 -15016377 + AluSp SINE Alu 1 302 -11 1044 82 0 0 chr6 167399055 167399190 -15016052 + AluSg/x SINE Alu 175 309 -3 31 26 0 0 chr6 167402025 167402063 -15013179 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr6 167404479 167404515 -15010727 + AT_rich Low_complexity Low_complexity 1 36 0 335 304 59 0 chr6 167406520 167406622 -15008620 + MIR3 SINE MIR 87 194 -14 2172 92 0 43 chr6 167407414 167407739 -15007503 - AluY SINE Alu 0 311 1 1504 179 0 8 chr6 167408241 167408498 -15006744 + AluJb SINE Alu 30 284 -28 2063 103 0 50 chr6 167408562 167408897 -15006345 + AluSx SINE Alu 1 320 0 195 42 0 0 chr6 167409183 167409207 -15006035 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 23 0 0 0 chr6 167410117 167410140 -15005102 + AT_rich Low_complexity Low_complexity 1 23 0 1328 152 53 103 chr6 167410728 167411030 -15004212 - AluJo SINE Alu -25 287 1 22 0 0 0 chr6 167412220 167412242 -15003000 + AT_rich Low_complexity Low_complexity 1 22 0 2485 90 0 0 chr6 167413920 167414230 -15001012 - AluY SINE Alu -1 310 1 29 0 0 0 chr6 167414522 167414551 -15000691 + AT_rich Low_complexity Low_complexity 1 29 0 743 318 87 30 chr6 167417046 167417439 -14997803 - L3 LINE CR1 -118 1459 1045 244 339 100 23 chr6 167417625 167417914 -14997328 - L3 LINE CR1 -785 792 431 726 216 130 0 chr6 167419225 167419410 -14995832 + MER3 DNA MER1_type 1 209 0 943 168 46 10 chr6 167421694 167421890 -14993352 + MER2 DNA MER2_type 9 211 -134 31 0 0 0 chr6 167422098 167422129 -14993113 + AT_rich Low_complexity Low_complexity 1 31 0 2444 88 0 0 chr6 167422410 167422716 -14992526 - AluSg SINE Alu -4 306 1 24 67 0 0 chr6 167422881 167422926 -14992316 + AT_rich Low_complexity Low_complexity 1 45 0 2465 48 0 0 chr6 167424505 167424794 -14990448 + AluY SINE Alu 1 289 -22 26 0 0 0 chr6 167424877 167424903 -14990339 + AT_rich Low_complexity Low_complexity 1 26 0 1428 163 10 54 chr6 167424975 167425270 -14989972 - AluJb SINE Alu -30 282 1 2106 94 3 7 chr6 167425272 167425569 -14989673 - AluSc SINE Alu -13 296 1 2296 105 0 3 chr6 167428865 167429178 -14986064 - AluSq SINE Alu -1 312 1 2173 101 7 0 chr6 167429187 167429483 -14985759 - AluSx SINE Alu -14 298 1 261 274 0 0 chr6 167429739 167429801 -14985441 + (CA)n Simple_repeat Simple_repeat 1 62 0 359 254 148 26 chr6 167431137 167431326 -14983916 + MIR SINE MIR 13 224 -38 2157 101 0 11 chr6 167432530 167432865 -14982377 - AluSx SINE Alu 0 332 1 24 32 0 0 chr6 167432875 167432906 -14982336 + AT_rich Low_complexity Low_complexity 1 31 0 194 278 0 42 chr6 167433831 167433903 -14981339 + MIR SINE MIR 117 185 -77 1445 213 237 14 chr6 167434011 167434514 -14980728 - MLT1E1 LTR MaLR -39 615 1 616 187 30 48 chr6 167435580 167435746 -14979496 + MER3 DNA MER1_type 47 209 0 181 293 0 0 chr6 167435854 167435895 -14979347 + L3 LINE CR1 1529 1569 -8 460 244 91 14 chr6 167437189 167437398 -14977844 - L1MEc LINE L1 -4292 2104 1880 * 1701 192 83 18 chr6 167437386 167438021 -14977221 - L1M4 LINE L1 -394 5849 5171 409 187 64 113 chr6 167438027 167438230 -14977012 - L1M4 LINE L1 -4757 1639 1447 1242 158 64 138 chr6 167438272 167438758 -14976484 - LTR7 LTR ERV1 0 450 1 955 175 19 16 chr6 167439070 167439295 -14975947 + LTR12 LTR ERV1 253 581 -133 2490 251 109 54 chr6 167439589 167440910 -14974332 - L1M4 LINE L1 -4942 1454 61 2238 103 0 0 chr6 167442047 167442338 -14972904 - AluSc SINE Alu -18 291 1 522 88 0 50 chr6 167442348 167442428 -14972814 - AluJ/FRAM SINE Alu -9 303 228 353 157 0 0 chr6 167442437 167442488 -14972754 - Alu SINE Alu -250 51 1 2079 120 0 0 chr6 167442683 167442994 -14972248 + AluSq SINE Alu 1 311 0 266 262 115 41 chr6 167442997 167443119 -14972123 - L2 LINE L2 -21 3251 3121 1819 257 132 56 chr6 167444019 167445438 -14969804 - HAL1 LINE L1 -182 2325 799 1212 115 0 0 chr6 167445438 167445603 -14969639 + AluSg/x SINE Alu 144 308 -4 2088 118 20 0 chr6 167445603 167445900 -14969342 + AluSg SINE Alu 1 303 -7 388 314 55 82 chr6 167445901 167446156 -14969086 - HAL1 LINE L1 -1699 808 561 302 214 100 50 chr6 167446475 167446615 -14968627 - MLT1F LTR MaLR -25 517 371 1767 172 0 22 chr6 167447157 167447476 -14967766 - AluJb SINE Alu 0 312 1 493 268 225 5 chr6 167448941 167449150 -14966092 + MIR SINE MIR 8 262 0 1683 144 37 13 chr6 167449379 167449642 -14965600 + AluJo SINE Alu 1 273 -39 351 0 0 0 chr6 167449642 167449681 -14965561 + (GA)n Simple_repeat Simple_repeat 2 40 0 1683 144 37 13 chr6 167449681 167449716 -14965526 + AluJo SINE Alu 273 306 -6 2415 71 0 0 chr6 167449817 167450112 -14965130 - AluY SINE Alu -16 295 1 615 261 45 11 chr6 167451999 167452175 -14963067 + MIR SINE MIR 11 192 -70 1668 159 3 66 chr6 167452656 167452843 -14962399 - AluJo SINE Alu -12 300 140 2229 100 0 0 chr6 167452843 167453142 -14962100 + AluSc SINE Alu 1 299 -10 1668 159 3 66 chr6 167453142 167453274 -14961968 - AluJo SINE Alu -172 140 1 717 242 39 39 chr6 167453422 167453653 -14961589 - MIR SINE MIR 0 262 32 2396 99 0 3 chr6 167453701 167454013 -14961229 - AluSx SINE Alu 0 312 2 21 0 0 0 chr6 167454169 167454190 -14961052 + AT_rich Low_complexity Low_complexity 1 21 0 2220 83 24 0 chr6 167455528 167455818 -14959424 - AluSx SINE Alu -14 298 2 549 209 0 0 chr6 167458265 167458370 -14956872 - MER53 DNA DNA 0 189 85 203 241 81 23 chr6 167458970 167459057 -14956185 + MIR SINE MIR 110 201 -61 213 316 84 39 chr6 167459985 167460140 -14955102 - MIR SINE MIR -64 198 37 2255 71 0 42 chr6 167460695 167461005 -14954237 - AluY SINE Alu -14 297 1 270 328 139 0 chr6 167461744 167461866 -14953376 + MIR SINE MIR 15 153 -109 222 219 41 68 chr6 167462176 167462249 -14952993 - L2 LINE L2 -9 3304 3234 413 172 16 0 chr6 167462250 167462314 -14952928 - AluJ/FLAM SINE Alu -246 66 2 355 334 88 25 chr6 167462355 167462708 -14952534 - L2 LINE L2 -89 3224 2850 2023 136 17 3 chr6 167463176 167463477 -14951765 - AluSx SINE Alu -7 305 1 494 307 119 56 chr6 167465176 167465753 -14949489 - L2 LINE L2 -2 3270 2638 900 202 0 12 chr6 167466167 167466340 -14948902 - AluJo SINE Alu -10 302 132 813 126 0 0 chr6 167466382 167466493 -14948749 + AluJb SINE Alu 48 158 -154 729 140 47 0 chr6 167466562 167466669 -14948573 - AluJo SINE Alu -187 125 14 1709 97 4 4 chr6 167467350 167467611 -14947631 - AluSg/x SINE Alu 0 346 86 315 0 0 0 chr6 167467615 167467650 -14947592 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2064 113 0 7 chr6 167467654 167467936 -14947306 - AluSg SINE Alu -30 280 1 453 290 43 54 chr6 167469479 167469755 -14945487 + L1ME4a LINE L1 5605 5877 -244 337 167 0 0 chr6 167470210 167470264 -14944978 - AluY SINE Alu 0 301 248 1582 62 0 5 chr6 167470264 167470458 -14944784 - AluY SINE Alu -118 193 1 186 240 0 0 chr6 167470569 167470619 -14944623 + CT-rich Low_complexity Low_complexity 1 50 0 1508 124 39 27 chr6 167470621 167470879 -14944363 - L1MB3 LINE L1 -2 6181 5921 429 320 66 20 chr6 167472188 167472385 -14942857 - MIR SINE MIR -43 219 14 234 0 0 0 chr6 167472761 167472787 -14942455 + (T)n Simple_repeat Simple_repeat 1 26 0 2129 103 7 0 chr6 167472821 167473102 -14942140 - AluSc SINE Alu -26 283 1 236 89 0 22 chr6 167473107 167473152 -14942090 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 291 305 110 18 chr6 167474303 167474467 -14940775 + L1M4c LINE L1 1332 1510 -4874 422 301 49 18 chr6 167475088 167475251 -14939991 + MIR3 SINE MIR 18 185 -23 2306 77 3 0 chr6 167475351 167475661 -14939581 - AluSp SINE Alu 0 311 1 330 225 126 9 chr6 167476804 167476915 -14938327 + LTR67 LTR ERVL 434 557 0 485 297 62 45 chr6 167477684 167478038 -14937204 - L2 LINE L2 -818 2496 2137 505 193 18 18 chr6 167478828 167478937 -14936305 + MER33 DNA MER1_type 34 142 -182 1497 164 18 19 chr6 167478937 167479434 -14935808 + MER6 DNA MER2_type 1 865 0 802 173 64 0 chr6 167479434 167479607 -14935635 + MER33 DNA MER1_type 141 324 0 1734 152 10 30 chr6 167480326 167480623 -14934619 + AluJo SINE Alu 1 291 -21 2233 117 3 0 chr6 167480695 167480995 -14934247 - AluSg SINE Alu -8 302 2 224 318 119 51 chr6 167481615 167481791 -14933451 - L2 LINE L2 -567 2747 2560 291 222 144 11 chr6 167481850 167481940 -14933302 - MIR SINE MIR -70 192 91 25 51 0 0 chr6 167482644 167482683 -14932559 + AT_rich Low_complexity Low_complexity 1 39 0 35 24 0 0 chr6 167482919 167482961 -14932281 + AT_rich Low_complexity Low_complexity 1 42 0 286 205 72 0 chr6 167484613 167484696 -14930546 + (CGGGG)n Simple_repeat Simple_repeat 2 90 0 1676 172 13 32 chr6 167486962 167487276 -14927966 + AluSx SINE Alu 1 308 -4 2163 226 24 13 chr6 167487845 167488401 -14926841 - L1ME1 LINE L1 -114 6052 5549 2044 112 42 0 chr6 167488410 167488695 -14926547 - AluSx SINE Alu -15 297 1 645 240 0 8 chr6 167489168 167489297 -14925945 - FLAM_A SINE Alu -5 128 1 204 40 0 0 chr6 167490536 167490561 -14924681 + (TG)n Simple_repeat Simple_repeat 2 26 0 550 264 246 12 chr6 167491893 167492379 -14922863 - L2 LINE L2 0 3313 2717 1138 264 71 14 chr6 167492518 167492942 -14922300 - MLT1H LTR MaLR -43 506 59 180 328 0 52 chr6 167493070 167493128 -14922114 + L2 LINE L2 1170 1224 -2090 2021 93 17 33 chr6 167494278 167494579 -14920663 - AluSx SINE Alu -16 296 1 462 290 81 19 chr6 167494725 167495035 -14920207 - L1ME4a LINE L1 -257 5864 5536 365 295 50 23 chr6 167495304 167495565 -14919677 - L1MC4a LINE L1 -1872 5936 5669 21 0 0 0 chr6 167497725 167497746 -14917496 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 167500817 167500846 -14914396 + AT_rich Low_complexity Low_complexity 1 29 0 1388 147 132 23 chr6 167501392 167501657 -14913585 - AluJb SINE Alu -18 294 1 2080 13 0 0 chr6 167501801 167502030 -14913212 - AluYb8 SINE Alu -7 311 83 1177 72 0 17 chr6 167502099 167502279 -14912963 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 2243 97 34 0 chr6 167502279 167502720 -14912522 - AluSc SINE Alu 0 451 1 22 35 0 0 chr6 167503452 167503481 -14911761 + AT_rich Low_complexity Low_complexity 1 29 0 472 256 80 21 chr6 167504075 167504242 -14911000 - MIR SINE MIR -71 191 16 2267 102 0 7 chr6 167505142 167505437 -14909805 - AluSx SINE Alu -13 299 7 266 327 144 10 chr6 167506421 167506525 -14908717 - L2 LINE L2 -5 3308 3191 21 36 0 0 chr6 167506740 167506768 -14908474 + AT_rich Low_complexity Low_complexity 1 28 0 251 224 0 60 chr6 167507184 167507195 -14908047 + MER3 DNA MER1_type 39 45 -164 570 259 81 5 chr6 167507195 167507380 -14907862 - MER3 DNA MER1_type 0 209 11 598 116 0 0 chr6 167507952 167508038 -14907204 - AluY SINE Alu -15 296 211 21 36 0 0 chr6 167508223 167508251 -14906991 + AT_rich Low_complexity Low_complexity 1 28 0 249 294 160 8 chr6 167509347 167509466 -14905776 - MIR3 SINE MIR -54 154 18 308 213 12 12 chr6 167509534 167509614 -14905628 - MER116 DNA Mariner 0 80 1 2236 113 3 0 chr6 167511374 167511675 -14903567 + AluSx SINE Alu 1 302 -10 2231 99 0 3 chr6 167512746 167513039 -14902203 + AluSg SINE Alu 1 292 -18 2141 120 0 0 chr6 167515215 167515499 -14899743 - AluSc SINE Alu -24 285 2 207 0 0 0 chr6 167515561 167515584 -14899658 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 1930 128 3 3 chr6 167515586 167515868 -14899374 - AluSx SINE Alu -30 282 1 1117 53 8 0 chr6 167516274 167516406 -14898836 + AluSq/x SINE Alu 1 133 -180 2316 82 7 0 chr6 167516425 167516717 -14898525 + AluSp SINE Alu 1 294 -19 264 326 12 0 chr6 167516956 167517042 -14898200 - MIR3 SINE MIR -13 195 109 2054 171 135 70 chr6 167518101 167518715 -14896527 - MLT1E1 LTR MaLR 0 654 1 479 152 61 0 chr6 167519378 167519477 -14895765 - L1PA13 LINE L1 0 6163 6059 2147 96 21 0 chr6 167519489 167519771 -14895471 - AluY SINE Alu -16 295 8 22 0 0 0 chr6 167519780 167519802 -14895440 + AT_rich Low_complexity Low_complexity 1 22 0 671 219 0 0 chr6 167519956 167520070 -14895172 - FLAM_A SINE Alu -19 114 1 21 0 0 0 chr6 167520126 167520147 -14895095 + AT_rich Low_complexity Low_complexity 1 21 0 2308 107 0 0 chr6 167520749 167521047 -14894195 - AluSx SINE Alu -14 298 1 247 288 0 27 chr6 167522074 167522147 -14893095 - L2 LINE L2 -16 3256 3186 24 0 0 0 chr6 167522838 167522862 -14892380 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr6 167523113 167523139 -14892103 + (T)n Simple_repeat Simple_repeat 1 26 0 259 283 71 10 chr6 167523773 167523872 -14891370 + MIR SINE MIR 138 242 -20 185 365 48 21 chr6 167523870 167524015 -14891227 - MIR SINE MIR -79 183 35 * 620 173 125 0 chr6 167524041 167524209 -14891033 + MER53 DNA DNA 1 189 0 1958 147 10 7 chr6 167524674 167524981 -14890261 - AluJo SINE Alu -4 308 1 28 0 0 26 chr6 167525167 167525189 -14890053 + AT_rich Low_complexity Low_complexity 1 23 -15 2254 111 0 3 chr6 167525189 167525487 -14889755 - AluSq SINE Alu -16 297 1 28 0 0 26 chr6 167525487 167525503 -14889739 + AT_rich Low_complexity Low_complexity 23 38 0 261 296 130 25 chr6 167525761 167525923 -14889319 - MIR SINE MIR -21 241 63 554 248 57 0 chr6 167528332 167528489 -14886753 - L1ME3A LINE L1 -11 6159 5994 348 294 158 18 chr6 167529565 167529786 -14885456 - MIR SINE MIR -8 254 3 21 0 0 0 chr6 167531724 167531745 -14883497 + AT_rich Low_complexity Low_complexity 1 21 0 284 219 17 59 chr6 167532535 167532654 -14882588 + L1ME4a LINE L1 5964 6077 -44 252 215 31 0 chr6 167534817 167534882 -14880360 - HAL1b LINE L1 -50 1298 1232 575 236 22 87 chr6 167535243 167535428 -14879814 - MIR SINE MIR -64 198 18 2153 130 0 3 chr6 167535585 167535886 -14879356 - AluSx SINE Alu -12 300 1 314 336 115 44 chr6 167536040 167536266 -14878976 - MIR SINE MIR -15 247 6 250 266 96 96 chr6 167536292 167536521 -14878721 - MIR SINE MIR -13 249 21 1950 121 7 7 chr6 167536692 167537007 -14878235 - AluSx SINE Alu 0 315 1 611 147 35 0 chr6 167537955 167538071 -14877171 + MLT1F1 LTR MaLR 6 125 -442 2297 167 52 25 chr6 167538073 167538587 -14876655 + L1MD3 LINE L1 7406 7933 -62 701 199 23 0 chr6 167538790 167538921 -14876321 - FAM SINE Alu -3 46 1 470 196 76 0 chr6 167544777 167544869 -14870373 - MER58B DNA MER1_type 0 341 243 817 141 11 85 chr6 167545020 167545197 -14870045 - FRAM SINE Alu -13 163 1 198 284 83 28 chr6 167546057 167546166 -14869076 + MIR SINE MIR 66 180 -82 2223 98 0 30 chr6 167546334 167546639 -14868603 + AluSq SINE Alu 1 296 -17 463 286 32 0 chr6 167548535 167548661 -14866581 + MER94 DNA DNA 3 132 -2 521 278 148 0 chr6 167549868 167550030 -14865212 + MIR SINE MIR 75 260 -2 222 232 266 8 chr6 167550608 167550731 -14864511 + MER91 DNA MER1_type 1 168 -22 21 0 0 0 chr6 167552630 167552651 -14862591 + AT_rich Low_complexity Low_complexity 1 21 0 864 279 104 45 chr6 167556350 167556835 -14858407 - L2 LINE L2 -2 3311 2755 2155 136 0 0 chr6 167556835 167557137 -14858105 - AluSx SINE Alu -10 302 1 864 279 104 45 chr6 167557137 167557357 -14857885 - L2 LINE L2 -558 2755 2549 376 287 124 20 chr6 167557357 167557559 -14857683 - L2 LINE L2 -868 2446 2224 456 261 17 8 chr6 167557583 167557702 -14857540 - MER5A DNA MER1_type -53 136 17 430 272 105 6 chr6 167557725 167557887 -14857355 - MER5B DNA MER1_type 0 178 1 327 312 7 32 chr6 167558533 167558687 -14856555 + L2 LINE L2 2946 3095 -177 236 191 59 44 chr6 167558729 167558797 -14856445 + L2 LINE L2 3244 3312 -1 1895 139 56 0 chr6 167561443 167561730 -14853512 - AluSx SINE Alu -9 303 1 2259 85 54 7 chr6 167565084 167565379 -14849863 - AluSg SINE Alu -1 309 1 1072 226 52 0 chr6 167565420 167565632 -14849610 + MER58A DNA MER1_type 1 223 -1 361 278 56 16 chr6 167565739 167565865 -14849377 - L2 LINE L2 -9 3304 3174 2540 279 128 20 chr6 167566204 167566314 -14848928 + L1MC4a LINE L1 3730 3827 -2729 2420 86 0 3 chr6 167566314 167566617 -14848625 - AluSg SINE Alu -8 302 1 2540 279 128 20 chr6 167566617 167568080 -14847162 + L1MC4a LINE L1 3827 5549 -1007 2393 86 0 7 chr6 167568080 167568382 -14846860 - AluSg SINE Alu -10 300 1 2540 279 128 20 chr6 167568382 167568674 -14846568 + L1MC4a LINE L1 5549 5808 -748 1229 202 198 45 chr6 167568725 167569270 -14845972 - MLT1E1 LTR MaLR -31 623 1 1311 222 187 14 chr6 167569291 167569968 -14845274 + L1MC4a LINE L1 6225 7807 0 197 233 17 33 chr6 167572262 167572322 -14842920 - L2 LINE L2 -76 3237 3179 953 223 16 5 chr6 167574318 167574502 -14840740 - MER5A DNA MER1_type -3 186 1 762 138 0 26 chr6 167574529 167574645 -14840597 + AluJb SINE Alu 183 295 -17 2343 100 3 0 chr6 167575402 167575703 -14839539 - AluSp SINE Alu -11 302 1 2041 159 100 18 chr6 167575824 167576215 -14839027 - MSTA LTR MaLR -5 423 1 2386 90 3 3 chr6 167576724 167577034 -14838208 + AluSx SINE Alu 1 310 -2 2418 80 0 3 chr6 167577897 167578208 -14837034 - AluY SINE Alu 0 311 2 215 355 143 24 chr6 167581502 167581964 -14833278 + L2 LINE L2 2379 2895 -419 204 224 0 20 chr6 167582089 167582138 -14833104 + L2 LINE L2 3225 3272 0 309 274 0 14 chr6 167582362 167582435 -14832807 + MIR SINE MIR 26 97 -111 2241 101 17 0 chr6 167584112 167584410 -14830832 - AluSx SINE Alu -9 303 1 208 277 0 0 chr6 167584544 167584591 -14830651 + L2 LINE L2 3185 3231 -41 2281 91 7 10 chr6 167585167 167585464 -14829778 - AluSx SINE Alu -16 296 1 186 297 165 11 chr6 167585528 167585619 -14829623 - L2 LINE L2 -1 3312 3208 222 62 0 0 chr6 167585659 167585691 -14829551 + (TCTCTG)n Simple_repeat Simple_repeat 3 34 0 25 0 0 0 chr6 167585706 167585731 -14829511 + GC_rich Low_complexity Low_complexity 1 25 0 604 295 84 0 chr6 167586224 167586451 -14828791 - MIR SINE MIR 0 262 17 313 227 6 129 chr6 167587123 167587286 -14827956 - MER112 DNA MER1_type -111 149 7 469 274 51 103 chr6 167588052 167588286 -14826956 + L2 LINE L2 2995 3216 -56 199 244 0 0 chr6 167588416 167588461 -14826781 + L2 LINE L2 3175 3219 -94 263 269 244 0 chr6 167589655 167589815 -14825427 - MIR3 SINE MIR -7 201 3 2263 114 0 3 chr6 167589857 167589988 -14825254 + AluSg SINE Alu 1 131 -179 2291 72 0 42 chr6 167589988 167590295 -14824947 + AluY SINE Alu 17 310 -1 2263 114 0 3 chr6 167590295 167590461 -14824781 + AluSg SINE Alu 131 297 -13 503 159 124 0 chr6 167590469 167590582 -14824660 - MIR SINE MIR -15 247 121 811 181 0 0 chr6 167590887 167591014 -14824228 + FLAM_A SINE Alu 3 129 -4 229 267 99 10 chr6 167591205 167591306 -14823936 + L1M LINE L1 5313 5422 -2386 254 208 42 0 chr6 167591693 167591741 -14823501 - MIR SINE MIR -83 125 76 184 300 0 0 chr6 167591765 167591805 -14823437 + L2 LINE L2 3125 3164 -108 2204 131 0 0 chr6 167592370 167592667 -14822575 + AluSx SINE Alu 2 298 -14 317 302 93 39 chr6 167593659 167593788 -14821454 - L2 LINE L2 0 3272 3137 195 320 61 69 chr6 167593949 167594166 -14821076 - L2 LINE L2 -344 2970 2753 2081 118 0 0 chr6 167594166 167594471 -14820771 - AluSg SINE Alu 0 305 1 195 320 61 69 chr6 167594471 167594873 -14820369 - L2 LINE L2 -561 2753 2355 228 263 18 0 chr6 167597198 167597255 -14817987 - MER49 LTR ERV1 -553 370 313 188 362 60 9 chr6 167597666 167597782 -14817460 + MIR3 SINE MIR 76 197 -11 760 236 105 22 chr6 167598522 167598751 -14816491 - MIR SINE MIR 0 262 15 322 287 19 46 chr6 167598770 167598878 -14816364 - MIR SINE MIR -114 148 44 2160 133 0 0 chr6 167599062 167599370 -14815872 + AluSx SINE Alu 1 308 -4 1733 163 0 11 chr6 167599389 167599685 -14815557 + AluJb SINE Alu 12 304 0 438 20 0 0 chr6 167600683 167600734 -14814508 + (TTGG)n Simple_repeat Simple_repeat 1 51 0 1791 148 4 11 chr6 167600734 167601005 -14814237 - AluJb SINE Alu -28 284 16 21 36 0 0 chr6 167602157 167602185 -14813057 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 27 chr6 167602193 167602210 -14813032 + AT_rich Low_complexity Low_complexity 1 17 -19 2140 122 3 7 chr6 167602210 167602506 -14812736 - AluSq SINE Alu -18 295 1 26 0 0 27 chr6 167602506 167602525 -14812717 + AT_rich Low_complexity Low_complexity 17 36 0 2193 134 0 0 chr6 167602670 167602969 -14812273 + AluSx SINE Alu 1 299 -13 263 310 10 20 chr6 167603042 167603142 -14812100 - MIR SINE MIR -79 183 85 500 260 144 0 chr6 167603350 167603531 -14811711 + L2 LINE L2 3107 3313 0 1080 219 132 29 chr6 167604134 167604811 -14810431 + L1ME1 LINE L1 5345 6103 -63 1704 192 0 0 chr6 167604826 167605149 -14810093 + AluSx SINE Alu 1 323 0 341 280 121 8 chr6 167606075 167606207 -14809035 - MIR SINE MIR -105 157 11 21 0 0 0 chr6 167607351 167607372 -14807870 + AT_rich Low_complexity Low_complexity 1 21 0 809 208 104 10 chr6 167607726 167607928 -14807314 + MER58A DNA MER1_type 1 221 -3 601 262 49 53 chr6 167608175 167608438 -14806804 + MIR SINE MIR 1 262 0 327 289 28 21 chr6 167608731 167608873 -14806369 - MIR SINE MIR -55 207 65 201 241 0 0 chr6 167609093 167609147 -14806095 + (CA)n Simple_repeat Simple_repeat 1 54 0 235 325 86 8 chr6 167609149 167609266 -14805976 + L2 LINE L2 3146 3271 -1 260 339 24 16 chr6 167609433 167609560 -14805682 + MIR SINE MIR 105 232 -30 458 184 0 53 chr6 167609672 167610416 -14804826 + C-rich Low_complexity Low_complexity 1 704 0 186 43 0 0 chr6 167610526 167610549 -14804693 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr6 167612123 167612152 -14803090 + AT_rich Low_complexity Low_complexity 1 29 0 222 118 0 0 chr6 167612289 167612323 -14802919 + (TG)n Simple_repeat Simple_repeat 2 35 0 1569 143 0 17 chr6 167616185 167616422 -14798820 - AluJo SINE Alu -79 233 1 200 367 10 10 chr6 167616881 167616979 -14798263 - MIR3 SINE MIR -1 207 110 2362 83 3 13 chr6 167617051 167617363 -14797879 - AluSc SINE Alu 0 309 1 243 0 0 0 chr6 167617383 167617410 -14797832 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1545 197 7 16 chr6 167620223 167620533 -14794709 + AluJo SINE Alu 1 307 -5 535 284 129 35 chr6 167622763 167623165 -14792077 + L2 LINE L2 2341 2780 -534 207 0 0 0 chr6 167623914 167623937 -14791305 + (TA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr6 167623969 167623992 -14791250 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 167624686 167624707 -14790535 + AT_rich Low_complexity Low_complexity 1 21 0 435 285 108 11 chr6 167626390 167626576 -14788666 + MIR SINE MIR 46 249 -13 1775 158 34 10 chr6 167628057 167628355 -14786887 + AluJb SINE Alu 1 305 -7 21 36 0 0 chr6 167629845 167629873 -14785369 + AT_rich Low_complexity Low_complexity 1 28 0 269 238 198 24 chr6 167632538 167632664 -14782578 - MER5A DNA MER1_type -35 154 7 22 0 0 0 chr6 167635921 167635943 -14779299 + AT_rich Low_complexity Low_complexity 1 22 0 239 0 32 0 chr6 167637201 167637232 -14778010 + (TA)n Simple_repeat Simple_repeat 1 32 0 198 91 0 0 chr6 167637502 167637535 -14777707 + (T)n Simple_repeat Simple_repeat 1 33 0 2430 76 0 0 chr6 167639046 167639336 -14775906 + AluSx SINE Alu 1 290 -22 236 190 17 0 chr6 167641931 167641989 -14773253 - L1MCa LINE L1 -4362 2064 2006 195 69 0 0 chr6 167642851 167642880 -14772362 + (A)n Simple_repeat Simple_repeat 1 29 0 1588 171 17 0 chr6 167843135 167843422 -14571820 + AluJb SINE Alu 1 292 -20 853 81 16 8 chr6 167843478 167843602 -14571640 + AluSp SINE Alu 1 125 -188 778 163 0 15 chr6 167843698 167843833 -14571409 - FLAM_C SINE Alu 0 133 1 1941 125 7 10 chr6 167844069 167844366 -14570876 - AluSx SINE Alu -16 296 1 2209 78 10 3 chr6 167845372 167845668 -14569574 + AluSq SINE Alu 1 298 -15 226 193 24 84 chr6 167846875 167846958 -14568284 + L1MC5 LINE L1 7840 7917 -44 21 36 0 0 chr6 167847613 167847641 -14567601 + AT_rich Low_complexity Low_complexity 1 28 0 1746 97 23 4 chr6 167847963 167848222 -14567020 - AluSc SINE Alu -3 306 43 2712 7 0 0 chr6 167848259 167848558 -14566684 + L1PA2 LINE L1 5853 6151 -4 552 68 0 0 chr6 167849657 167849730 -14565512 + (TA)n Simple_repeat Simple_repeat 1 73 0 1760 152 33 0 chr6 167849932 167850234 -14565008 + AluJb SINE Alu 1 312 0 369 265 204 37 chr6 167851007 167851169 -14564073 + MER5A DNA MER1_type 1 189 0 996 180 69 0 chr6 167851419 167851608 -14563634 + MER2 DNA MER2_type 5 206 -139 349 346 20 20 chr6 167851777 167851930 -14563312 - MIR SINE MIR -83 179 27 2064 115 0 16 chr6 167851941 167852255 -14562987 - AluSq SINE Alu -4 309 1 601 133 20 10 chr6 167852601 167852699 -14562543 - AluY SINE Alu -25 286 188 272 248 37 37 chr6 167852799 167852908 -14562334 + L2 LINE L2 1882 1990 -1324 321 316 64 11 chr6 167853395 167853582 -14561660 + L2 LINE L2 2862 3058 -255 1147 179 65 38 chr6 167853687 167853872 -14561370 - AluJb SINE Alu -2 310 114 216 0 0 0 chr6 167853872 167853896 -14561346 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1147 179 65 38 chr6 167853896 167853973 -14561269 - AluJb SINE Alu -198 114 41 1364 178 0 37 chr6 167853980 167854249 -14560993 - AluJb SINE Alu -13 299 41 423 278 0 0 chr6 167854272 167854362 -14560880 + L2 LINE L2 3224 3313 0 2220 101 3 13 chr6 167854981 167855297 -14559945 + AluSp SINE Alu 1 313 0 243 0 0 0 chr6 167855386 167855413 -14559829 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2155 126 0 0 chr6 167856553 167856863 -14558379 - AluJb SINE Alu -2 310 1 231 88 0 0 chr6 167857060 167857094 -14558148 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 693 280 72 26 chr6 167857094 167857427 -14557815 - L2 LINE L2 -13 3259 2914 1519 108 75 65 chr6 167857473 167857557 -14557685 + LTR8A LTR ERV1 1 83 -644 2261 70 0 26 chr6 167857557 167857859 -14557383 - AluY SINE Alu -13 298 5 1519 108 75 65 chr6 167857859 167858052 -14557190 + LTR8A LTR ERV1 83 281 -446 21 36 0 0 chr6 167859091 167859119 -14556123 + AT_rich Low_complexity Low_complexity 1 28 0 2018 173 57 48 chr6 167859119 167859577 -14555665 + LTR8A LTR ERV1 266 727 0 1995 115 7 0 chr6 167859831 167860117 -14555125 + AluSq SINE Alu 1 288 -25 1503 153 25 59 chr6 167860442 167860762 -14554480 - AluJb SINE Alu -3 309 1 387 311 133 51 chr6 167860843 167860895 -14554347 - L2 LINE L2 -4 3309 3263 279 0 0 0 chr6 167860895 167860926 -14554316 + (TA)n Simple_repeat Simple_repeat 2 32 0 2163 73 0 0 chr6 167860927 167861202 -14554040 - AluSc SINE Alu -17 292 18 387 311 133 51 chr6 167861202 167861710 -14553532 - L2 LINE L2 -49 3264 2622 1229 198 147 81 chr6 167862015 167862119 -14553123 - MLT1C LTR MaLR 0 467 371 763 155 0 0 chr6 167862119 167862235 -14553007 + FLAM_C SINE Alu 2 117 -16 1229 198 147 81 chr6 167862235 167862565 -14552677 - MLT1C LTR MaLR -96 371 4 2253 102 3 0 chr6 167862739 167863044 -14552198 - AluSx SINE Alu -6 306 1 1935 167 36 33 chr6 167863095 167863484 -14551758 + MLT1B LTR MaLR 1 390 0 2145 87 0 3 chr6 167863581 167863868 -14551374 - AluSg SINE Alu -24 286 1 504 301 51 17 chr6 167863883 167864059 -14551183 - MIR SINE MIR 0 262 81 2338 73 0 13 chr6 167864335 167864650 -14550592 + AluY SINE Alu 1 311 0 219 315 37 74 chr6 167866426 167866534 -14548708 + L2 LINE L2 3169 3272 0 1842 120 3 33 chr6 167866584 167866913 -14548329 - AluSx SINE Alu 0 320 1 1430 107 141 12 chr6 167867158 167867400 -14547842 + AluSx SINE Alu 16 288 -24 529 252 96 0 chr6 167867408 167867543 -14547699 - AluJb SINE Alu -31 281 134 1848 139 10 3 chr6 167867714 167868009 -14547233 - AluSx SINE Alu -15 297 1 368 241 98 15 chr6 167869197 167869330 -14545912 + MER5A DNA MER1_type 38 181 -8 1926 130 10 7 chr6 167869604 167869905 -14545337 + AluSx SINE Alu 6 307 -5 542 295 45 50 chr6 167870202 167870599 -14544643 + L1MC3 LINE L1 5658 6052 -1733 * 2069 210 32 11 chr6 167870253 167870715 -14544527 + L1MB7 LINE L1 5710 6181 -3 339 278 111 6 chr6 167872530 167872692 -14542550 - MIR3 SINE MIR -8 200 22 225 364 84 13 chr6 167872807 167872961 -14542281 + L2 LINE L2 3107 3271 -1 644 155 16 39 chr6 167873095 167873224 -14542018 - FLAM_C SINE Alu -5 138 13 1981 126 0 3 chr6 167873247 167873559 -14541683 - AluSx SINE Alu 0 311 1 336 103 0 0 chr6 167874192 167874250 -14540992 + (TGG)n Simple_repeat Simple_repeat 1 58 0 1788 118 4 18 chr6 167874253 167874533 -14540709 - AluSx SINE Alu -36 276 1 296 255 68 83 chr6 167874744 167874936 -14540306 + MER20B DNA MER1_type 3 191 -592 491 147 0 0 chr6 167875272 167875347 -14539895 - AluJ/FRAM SINE Alu -17 295 221 755 142 8 24 chr6 167875361 167875488 -14539754 - FLAM_C SINE Alu -17 126 2 2072 84 28 0 chr6 167875699 167875986 -14539256 - AluY SINE Alu -16 295 1 1549 111 13 0 chr6 167876085 167876310 -14538932 + AluSg/x SINE Alu 70 297 -15 2396 70 0 0 chr6 167876520 167876821 -14538421 + AluY SINE Alu 1 301 -10 1425 135 23 0 chr6 167877357 167877617 -14537625 - AluSp SINE Alu -47 266 1 1772 142 17 10 chr6 167877655 167877957 -14537285 + AluJb SINE Alu 1 304 -8 421 252 73 49 chr6 167878157 167878280 -14536962 + L2 LINE L2 3143 3268 -4 23 33 0 0 chr6 167878387 167878417 -14536825 + AT_rich Low_complexity Low_complexity 1 30 0 2358 71 0 0 chr6 167878421 167878715 -14536527 + AluSg SINE Alu 5 298 -12 499 254 43 77 chr6 167879219 167879337 -14535905 - Charlie8 DNA MER1_type -110 231 121 1553 203 3 10 chr6 167879337 167879632 -14535610 - AluJo SINE Alu -15 297 5 499 254 43 77 chr6 167879632 167879722 -14535520 - Charlie8 DNA MER1_type -220 121 30 2030 101 24 0 chr6 167879792 167880079 -14535163 - AluSx SINE Alu -18 294 1 1928 112 0 11 chr6 167882164 167882494 -14532748 - AluSx SINE Alu 0 327 1 417 243 0 68 chr6 167882641 167882708 -14532534 - L1M4 LINE L1 -1187 4959 4889 1932 122 41 0 chr6 167882708 167883002 -14532240 - AluSx SINE Alu -6 306 1 417 243 0 68 chr6 167883002 167883111 -14532131 - L1M4 LINE L1 -1257 4889 4795 2136 117 0 7 chr6 167883338 167883645 -14531597 - AluSx SINE Alu -7 305 1 808 126 0 8 chr6 167883733 167883852 -14531390 + FLAM_C SINE Alu 1 118 -25 210 333 67 0 chr6 167884725 167884830 -14530412 - MIR SINE MIR -91 171 60 2119 104 10 0 chr6 167885559 167885858 -14529384 + AluSx SINE Alu 1 302 -10 1667 196 152 7 chr6 167886325 167886733 -14528509 - MLT1C LTR MaLR 0 467 1 211 276 79 0 chr6 167886839 167886915 -14528327 + MIR SINE MIR 60 141 -121 210 178 67 11 chr6 167886988 167887078 -14528164 + (TAA)n Simple_repeat Simple_repeat 1 95 0 258 116 0 0 chr6 167887408 167887451 -14527791 + (TG)n Simple_repeat Simple_repeat 2 44 0 221 317 67 10 chr6 167887600 167887704 -14527538 + MIR3 SINE MIR 6 115 -93 291 28 0 0 chr6 167888133 167888169 -14527073 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1783 151 0 11 chr6 167888176 167888460 -14526782 - AluSx SINE Alu -30 282 2 518 87 14 0 chr6 167888723 167888792 -14526450 + Alu SINE Alu 2 71 -238 383 250 125 15 chr6 167888949 167889085 -14526157 - MIR SINE MIR -26 236 86 586 256 30 0 chr6 167889112 167889245 -14525997 - MIR SINE MIR -18 244 108 678 237 46 0 chr6 167889285 167889458 -14525784 - MER5A DNA MER1_type -7 182 2 21 0 0 0 chr6 167890139 167890160 -14525082 + GC_rich Low_complexity Low_complexity 1 21 0 36 62 0 0 chr6 167891003 167891067 -14524175 + GC_rich Low_complexity Low_complexity 1 64 0 2052 98 4 0 chr6 167892315 167892592 -14522650 - AluSx SINE Alu -34 278 1 1735 159 73 3 chr6 167893053 167893393 -14521849 - L1MB3 LINE L1 0 6183 5820 1465 143 61 55 chr6 167893622 167893915 -14521327 + AluJo SINE Alu 1 295 -17 2368 87 3 0 chr6 167894562 167894850 -14520392 + AluSc SINE Alu 8 296 -13 674 278 193 40 chr6 167895969 167896701 -14518541 - L2 LINE L2 -84 3188 2330 189 308 126 49 chr6 167896887 167897030 -14518212 - MER5A DNA MER1_type 0 189 36 1737 159 10 55 chr6 167897508 167897817 -14517425 - AluJo SINE Alu -17 295 1 241 280 93 0 chr6 167898424 167898499 -14516743 + MIR SINE MIR 66 147 -115 2241 116 3 7 chr6 167899376 167899679 -14515563 - AluSx SINE Alu -9 303 2 1704 171 20 20 chr6 167900151 167900449 -14514793 + AluJo SINE Alu 1 298 -14 2227 135 0 0 chr6 167901403 167901706 -14513536 - AluSx SINE Alu -9 303 1 2352 104 0 7 chr6 167903670 167903979 -14511263 - AluSg SINE Alu -3 307 1 1908 140 12 43 chr6 167903985 167904307 -14510935 - AluJo SINE Alu 0 312 1 1769 161 18 0 chr6 167908012 167908297 -14506945 + AluJb SINE Alu 1 290 -22 265 149 60 0 chr6 167909718 167909785 -14505457 - L1ME2 LINE L1 -10 6154 6084 2201 128 3 0 chr6 167909872 167910169 -14505073 - AluSx SINE Alu -14 298 1 660 176 16 0 chr6 167910371 167910496 -14504746 + LTR8A LTR ERV1 244 370 -357 1871 141 0 44 chr6 167910630 167910927 -14504315 + AluJb SINE Alu 1 284 -28 3069 225 150 11 chr6 167910941 167911893 -14503349 - L1MC4a LINE L1 -13 7795 6711 2321 88 7 3 chr6 167915175 167915472 -14499770 + AluSg SINE Alu 1 298 -12 405 39 0 0 chr6 167915783 167915834 -14499408 + (TG)n Simple_repeat Simple_repeat 2 52 0 373 300 132 12 chr6 167915967 167916217 -14499025 - L2 LINE L2 -12 3301 3022 252 316 116 7 chr6 167919921 167920076 -14495166 - MIR SINE MIR -28 234 63 375 261 99 0 chr6 167921651 167921762 -14493480 + MIR SINE MIR 63 184 -78 1443 168 58 41 chr6 167922095 167922459 -14492783 - THE1C LTR MaLR 0 375 6 201 39 0 0 chr6 167924182 167924208 -14491034 + (T)n Simple_repeat Simple_repeat 1 26 0 2221 104 7 0 chr6 167925004 167925291 -14489951 + AluSc SINE Alu 1 289 -20 1422 172 56 11 chr6 167925329 167925597 -14489645 - AluJo SINE Alu -28 284 5 2154 132 0 0 chr6 167927583 167927872 -14487370 - AluSx SINE Alu -23 289 1 2493 71 0 19 chr6 167928899 167929209 -14486033 + AluY SINE Alu 1 304 -7 1187 92 116 5 chr6 167930505 167930676 -14484566 + MER30 DNA MER1_type 1 200 -30 2176 112 13 7 chr6 167930676 167930981 -14484261 + AluSx SINE Alu 1 307 -5 1187 92 116 5 chr6 167930981 167931016 -14484226 + MER30 DNA MER1_type 200 230 0 2324 103 3 0 chr6 167932053 167932345 -14482897 - AluSc SINE Alu -14 295 3 261 0 0 0 chr6 167933757 167933786 -14481456 + (A)n Simple_repeat Simple_repeat 1 29 0 2202 101 3 7 chr6 167933786 167934073 -14481169 - AluSx SINE Alu -21 291 6 22 0 0 0 chr6 167934080 167934102 -14481140 + AT_rich Low_complexity Low_complexity 1 22 0 242 305 85 49 chr6 167934418 167934582 -14480660 - MIR SINE MIR 0 262 93 1807 165 0 10 chr6 167935154 167935445 -14479797 - AluJo SINE Alu -24 288 1 2580 72 0 0 chr6 167935761 167936067 -14479175 - AluY SINE Alu -5 306 1 399 248 306 20 chr6 167936234 167936581 -14478661 + Charlie2a DNA MER1_type 1 446 -2416 553 211 60 12 chr6 167936586 167936752 -14478490 + Charlie2a DNA MER1_type 746 919 -1943 2709 37 0 0 chr6 167936759 167937057 -14478185 - AluY SINE Alu -13 298 1 2280 112 3 6 chr6 167937124 167937436 -14477806 + AluSq SINE Alu 1 311 -2 203 286 71 31 chr6 167937501 167937599 -14477643 + MIR SINE MIR 81 182 -80 2295 107 3 10 chr6 167939410 167939720 -14475522 + AluSq SINE Alu 1 308 -5 1267 209 8 8 chr6 167939740 167939993 -14475249 + AluJo SINE Alu 54 306 -6 827 249 125 83 chr6 167940073 167940616 -14474626 - L1ME3A LINE L1 -26 6144 5579 563 177 0 151 chr6 167940615 167940718 -14474524 - L1M4 LINE L1 -2652 3494 3430 * 1539 168 111 14 chr6 167940718 167940998 -14474244 + AluJo SINE Alu 1 307 -5 563 177 0 151 chr6 167940998 167941080 -14474162 - L1M4 LINE L1 -2716 3430 3337 1113 147 28 17 chr6 167941085 167941262 -14473980 - AluJo/FRAM SINE Alu 0 312 134 2122 118 3 13 chr6 167941262 167941566 -14473676 - AluSx SINE Alu -11 301 1 2311 112 0 0 chr6 167941640 167941943 -14473299 - AluSq SINE Alu -10 303 1 239 200 300 0 chr6 167941943 167942043 -14473199 - L1M4 LINE L1 -3059 3087 2958 698 264 72 78 chr6 167942331 167942718 -14472524 + L1M4 LINE L1 4942 5326 -820 1053 134 69 152 chr6 167942719 167942995 -14472247 + AluJo SINE Alu 1 253 -59 849 146 0 49 chr6 167942997 167943141 -14472101 + AluJo/FRAM SINE Alu 157 293 -19 29 0 0 0 chr6 167943141 167943170 -14472072 + AT_rich Low_complexity Low_complexity 1 29 0 225 212 0 47 chr6 167943171 167943219 -14472023 + L1M LINE L1 5318 5362 -943 2359 106 0 0 chr6 167943219 167943522 -14471720 + AluSx SINE Alu 1 303 -9 225 212 0 47 chr6 167943522 167943558 -14471684 + L1M LINE L1 5362 5398 -907 671 181 0 0 chr6 167943565 167943670 -14471572 + FLAM_C SINE Alu 14 118 -25 2359 85 0 0 chr6 167943742 167944024 -14471218 + AluSg SINE Alu 1 282 -28 1262 101 0 0 chr6 167943865 167944024 -14471218 + AluSg/x SINE Alu 124 304 0 199 0 0 0 chr6 167944024 167944046 -14471196 + (TAA)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chr6 167944046 167944068 -14471174 + AT_rich Low_complexity Low_complexity 1 22 0 245 254 91 36 chr6 167944104 167944214 -14471028 - L1 LINE L1 -1149 4997 4882 2010 158 11 22 chr6 167944233 167944593 -14470649 + MLT1A1 LTR MaLR 10 365 0 468 309 64 0 chr6 167944614 167944818 -14470424 - L1 LINE L1 -1300 4846 4630 286 256 204 12 chr6 167945417 167945552 -14469690 + MIR SINE MIR 31 209 -53 2287 87 0 40 chr6 167945888 167946211 -14469031 + AluY SINE Alu 2 311 0 2215 121 7 0 chr6 167946289 167946595 -14468647 + AluSx SINE Alu 1 308 -4 1050 98 0 0 chr6 167946760 167946893 -14468349 + AluSq/x SINE Alu 1 133 -179 2181 107 3 41 chr6 167947619 167947938 -14467304 + AluY SINE Alu 1 307 -4 8213 114 26 9 chr6 167948202 167949137 -14466105 + HSMAR1 DNA Mariner 9 972 -315 2310 105 3 7 chr6 167949137 167949442 -14465800 + AluSx SINE Alu 1 304 -8 8213 114 26 9 chr6 167949442 167949764 -14465478 + HSMAR1 DNA Mariner 972 1287 0 441 304 9 0 chr6 167949847 167949959 -14465283 + MER81 DNA DNA 2 114 0 440 328 55 46 chr6 167949964 167950202 -14465040 + L1M4b LINE L1 1397 1636 -5223 2198 130 3 0 chr6 167950210 167950511 -14464731 + AluSx SINE Alu 1 302 -10 232 340 7 7 chr6 167950536 167950680 -14464562 + L1M4b LINE L1 1796 1939 -5199 522 179 0 10 chr6 167950703 167950900 -14464342 + AluJo SINE Alu 13 289 -23 350 313 77 13 chr6 167950906 167951253 -14463989 + L1M4b LINE L1 1874 2287 -4851 323 313 168 38 chr6 167951488 167951548 -14463694 - L2 LINE L2 -1486 1828 1777 2183 139 0 0 chr6 167951548 167951850 -14463392 + AluSx SINE Alu 1 302 -10 323 313 168 38 chr6 167951850 167952313 -14462929 - L2 LINE L2 -1537 1777 1237 279 316 25 101 chr6 167952504 167952662 -14462580 - MIR3 SINE MIR -60 148 3 788 236 71 13 chr6 167953146 167953371 -14461871 + MIR SINE MIR 1 238 -24 2343 117 3 0 chr6 167953690 167953999 -14461243 - AluSq SINE Alu -3 310 1 310 275 33 22 chr6 167954044 167954135 -14461107 - L1ME3A LINE L1 -219 5951 5860 2331 82 3 3 chr6 167954141 167954435 -14460807 - AluY SINE Alu -17 294 1 485 309 58 47 chr6 167954464 167954807 -14460435 - L1ME3A LINE L1 -401 5720 5374 445 246 164 52 chr6 167955451 167955683 -14459559 + MIR SINE MIR 5 262 0 248 275 213 31 chr6 167955693 167956080 -14459162 - L2 LINE L2 -3 3269 2804 3850 112 35 36 chr6 167956273 167956386 -14458856 - LTR10E LTR ERV1 0 633 521 2586 46 10 3 chr6 167956386 167956690 -14458552 - AluY SINE Alu -5 306 1 3850 112 35 36 chr6 167956690 167956879 -14458363 - LTR10E LTR ERV1 -112 521 333 2318 96 0 3 chr6 167956879 167957182 -14458060 + AluY SINE Alu 1 302 -9 3850 112 35 36 chr6 167957182 167957512 -14457730 - LTR10E LTR ERV1 -300 333 1 282 218 0 91 chr6 167957512 167957622 -14457620 - LTR10E-int LTR ERV1 0 6649 6550 * 2849 235 10 13 chr6 167957618 167958613 -14456629 - LTR10E-int LTR ERV1 -759 5890 4893 2407 93 0 0 chr6 167958613 167958914 -14456328 + AluY SINE Alu 1 301 -10 2849 235 10 13 chr6 167958914 167959194 -14456048 - LTR10E-int LTR ERV1 -1756 4893 2705 2451 91 0 0 chr6 167959194 167959503 -14455739 - AluY SINE Alu -2 309 1 1020 190 36 16 chr6 167959752 167960005 -14455237 - LTR10E-int LTR ERV1 -6360 289 32 3975 112 23 5 chr6 167960030 167960640 -14454602 - LTR10E LTR ERV1 0 633 13 2493 91 0 0 chr6 167960640 167960949 -14454293 + AluY SINE Alu 1 309 -2 260 192 0 19 chr6 167960952 167961004 -14454238 - MER50 LTR ERV1 -183 551 501 1227 231 39 50 chr6 167961004 167961341 -14453901 + MLT1A1 LTR MaLR 33 365 0 1333 107 0 123 chr6 167961687 167961931 -14453311 - AluY SINE Alu -9 302 89 1330 34 7 0 chr6 167961952 167962101 -14453141 - AluYb8 SINE Alu -168 150 1 1431 233 51 58 chr6 167962182 167962668 -14452574 + L1ME LINE L1 4680 5162 -984 1207 114 0 0 chr6 167962912 167963070 -14452172 + AluSg/x SINE Alu 137 294 -18 2058 133 13 7 chr6 167963289 167963598 -14451644 + AluSx SINE Alu 1 311 -1 2553 66 0 3 chr6 167963610 167963913 -14451329 + AluY SINE Alu 1 302 -9 266 73 24 0 chr6 167965416 167965457 -14449785 + (CA)n Simple_repeat Simple_repeat 1 42 0 2266 124 0 22 chr6 167965712 167966027 -14449215 - AluSx SINE Alu -4 308 1 721 222 87 5 chr6 167966055 167966240 -14449002 - MER3 DNA MER1_type -1 208 9 519 206 59 13 chr6 167967087 167967231 -14448011 + L1MB3 LINE L1 6025 6178 -5 247 295 36 18 chr6 167967262 167967374 -14447868 + L1ME LINE L1 5492 5605 -516 2152 98 59 0 chr6 167967384 167967670 -14447572 + AluSg SINE Alu 1 303 -7 2167 119 20 3 chr6 167967694 167967997 -14447245 + AluSx SINE Alu 1 308 -4 1613 154 0 4 chr6 167968347 167968620 -14446622 + AluJb SINE Alu 50 321 0 1875 175 13 10 chr6 167968828 167969137 -14446105 + AluSx SINE Alu 1 310 -2 1704 157 44 27 chr6 167969249 167969543 -14445699 + AluJo SINE Alu 1 299 -13 457 271 13 53 chr6 167969964 167970115 -14445127 + MIR SINE MIR 110 254 -8 376 291 45 77 chr6 167970230 167970334 -14444908 + MIR SINE MIR 21 127 -135 2116 131 3 16 chr6 167970334 167970640 -14444602 - AluSq SINE Alu -11 302 1 376 291 45 77 chr6 167970640 167970651 -14444591 + MIR SINE MIR 127 137 -125 2053 146 3 0 chr6 167970651 167970952 -14444290 - AluJb SINE Alu -10 302 1 376 291 45 77 chr6 167970952 167971055 -14444187 + MIR SINE MIR 137 233 -29 486 284 57 29 chr6 167971384 167971589 -14443653 + MIR SINE MIR 30 245 -17 216 276 11 69 chr6 167971632 167971719 -14443523 - MIR SINE MIR -62 200 119 997 211 64 54 chr6 167973364 167973469 -14441773 - MER33 DNA MER1_type -2263 322 219 2077 131 28 0 chr6 167973469 167973760 -14441482 - AluSx SINE Alu -13 299 1 997 211 64 54 chr6 167973760 167973967 -14441275 - MER33 DNA MER1_type -2366 219 7 183 80 0 0 chr6 167975135 167975160 -14440082 + (TG)n Simple_repeat Simple_repeat 1 25 0 2356 91 3 0 chr6 167976382 167976679 -14438563 - AluSx SINE Alu -4 308 11 203 235 0 0 chr6 167977063 167977114 -14438128 + G-rich Low_complexity Low_complexity 6 56 0 267 163 23 23 chr6 167977497 167977583 -14437659 + (TCCA)n Simple_repeat Simple_repeat 1 86 0 2539 64 3 10 chr6 167977700 167978013 -14437229 + AluY SINE Alu 1 311 0 8932 154 49 38 chr6 167978069 167978681 -14436561 + Ricksha_c DNA DNA 69 673 -2581 4302 74 24 0 chr6 167978681 167979222 -14436020 + MER41A LTR ERV1 1 554 0 8932 154 49 38 chr6 167979222 167979680 -14435562 + Ricksha_c DNA DNA 673 1124 -2130 2033 130 16 10 chr6 167979680 167979987 -14435255 + AluSg SINE Alu 1 309 -1 8932 154 49 38 chr6 167979987 167980700 -14434542 + Ricksha_c DNA DNA 1124 1873 -173 1338 151 18 0 chr6 167980701 167980919 -14434323 - AluJo SINE Alu -5 307 86 763 176 48 0 chr6 167980920 167981085 -14434157 + Ricksha DNA DNA 2675 2847 -7 211 236 126 118 chr6 167981192 167981255 -14433987 - MIR SINE MIR -59 203 142 1702 147 95 40 chr6 167981255 167981518 -14433724 + MER47A DNA MER2_type 2 290 -2033 2019 98 61 0 chr6 167981518 167981795 -14433447 - AluSx SINE Alu -18 294 1 1702 147 95 40 chr6 167981795 167981877 -14433365 + MER47A DNA MER2_type 290 366 0 211 236 126 118 chr6 167981877 167981940 -14433302 - MIR SINE MIR -120 142 76 503 238 25 9 chr6 167983635 167983793 -14431449 + L1MB7 LINE L1 6014 6174 -10 629 205 197 43 chr6 167986470 167986630 -14428612 - MER58 DNA MER1_type -71 270 136 1809 133 66 19 chr6 167986630 167986944 -14428298 + AluSx SINE Alu 1 327 0 629 205 197 43 chr6 167986944 167987016 -14428226 - MER58 DNA MER1_type -205 136 1 2530 82 0 0 chr6 167987578 167987884 -14427358 - AluY SINE Alu -5 306 1 233 283 88 35 chr6 167987884 167987997 -14427245 - MIR SINE MIR -117 145 27 752 139 9 0 chr6 167988205 167988320 -14426922 - FRAM SINE Alu -20 156 41 464 155 12 12 chr6 167988325 167988409 -14426833 + AluJo SINE Alu 49 132 -180 1411 97 0 0 chr6 167988409 167988584 -14426658 - AluSp SINE Alu -10 303 129 1013 146 16 73 chr6 167988584 167988776 -14426466 + AluJo SINE Alu 113 293 -19 555 222 39 28 chr6 167988879 167989059 -14426183 + MLT1C LTR MaLR 286 467 0 399 156 33 67 chr6 167989428 167989608 -14425634 + (CACCT)n Simple_repeat Simple_repeat 3 176 0 182 318 71 35 chr6 167989750 167989835 -14425407 + L2 LINE L2 3208 3295 -18 2392 67 0 0 chr6 167989840 167990124 -14425118 + AluY SINE Alu 1 284 -27 225 0 0 0 chr6 167990124 167990149 -14425093 + (CATA)n Simple_repeat Simple_repeat 2 26 0 977 115 0 0 chr6 167990340 167990462 -14424780 + FLAM_C SINE Alu 2 123 -20 2337 71 3 3 chr6 167990470 167990782 -14424460 - AluSp SINE Alu 0 312 1 2015 157 3 0 chr6 167990784 167991090 -14424152 - AluSx SINE Alu -5 307 1 31 0 0 0 chr6 167991091 167991122 -14424120 + AT_rich Low_complexity Low_complexity 1 31 0 189 280 68 68 chr6 167991204 167991336 -14423906 + MIR SINE MIR 35 166 -96 206 337 56 0 chr6 167991878 167991967 -14423275 - MER91B DNA MER1_type -10 180 87 291 246 51 109 chr6 167991981 167992119 -14423123 - MER91B DNA MER1_type -60 130 1 2334 110 0 0 chr6 167992342 167992641 -14422601 - AluSx SINE Alu -13 299 1 1789 202 6 135 chr6 167993073 167993316 -14421926 - L1 LINE L1 -866 5280 5007 1686 145 50 42 chr6 167993316 167993599 -14421643 - AluJb SINE Alu -27 285 1 1789 202 6 135 chr6 167993599 167994027 -14421215 - L1 LINE L1 -1139 5007 4696 4505 152 23 46 chr6 167994035 167994253 -14420989 + L1MB3 LINE L1 5297 5519 -664 2053 99 17 34 chr6 167994253 167994547 -14420695 + AluSc SINE Alu 1 289 -20 4505 152 23 46 chr6 167994547 167995236 -14420006 + L1MB3 LINE L1 5519 6183 0 1021 192 67 5 chr6 167995522 167995730 -14419512 - MER58A DNA MER1_type -1 223 3 1886 160 3 0 chr6 167996161 167996468 -14418774 + AluSx SINE Alu 1 308 -4 867 162 0 0 chr6 167996763 167996905 -14418337 + FLAM_C SINE Alu 1 142 -1 1443 169 6 86 chr6 167996915 167997073 -14418169 + AluJb SINE Alu 1 121 -191 1867 151 17 0 chr6 167997073 167997371 -14417871 + AluSx SINE Alu 1 303 -9 1443 169 6 86 chr6 167997371 167997537 -14417705 + AluJb SINE Alu 121 299 -13 21 0 0 0 chr6 167997544 167997565 -14417677 + AT_rich Low_complexity Low_complexity 1 21 0 2223 70 0 45 chr6 167997786 167998100 -14417142 - AluY SINE Alu -11 300 1 2587 42 0 3 chr6 167998468 167998780 -14416462 - AluY SINE Alu 0 311 1 2245 89 3 0 chr6 167998785 167999078 -14416164 - AluSp SINE Alu -19 294 1 323 314 0 0 chr6 167999623 167999709 -14415533 + L2 LINE L2 3186 3271 -1 1269 158 0 18 chr6 168000620 168000842 -14414400 + AluJo SINE Alu 1 218 -94 318 163 0 0 chr6 168000896 168000966 -14414276 + Alu SINE Alu 234 303 0 623 259 103 23 chr6 168000967 168001230 -14414012 - L2 LINE L2 -20 3293 3010 189 222 0 0 chr6 168001456 168001501 -14413741 - L2 LINE L2 -788 2526 2482 221 200 11 67 chr6 168002230 168002320 -14412922 + (CGGGG)n Simple_repeat Simple_repeat 5 89 0 180 0 0 0 chr6 168002778 168002798 -14412444 + (CCCCAG)n Simple_repeat Simple_repeat 1 20 0 2405 62 3 0 chr6 168003309 168003615 -14411627 + AluSp SINE Alu 1 307 -6 230 271 29 14 chr6 168003956 168004026 -14411216 + MIR3 SINE MIR 93 163 -45 2301 94 0 0 chr6 168005218 168005527 -14409715 + AluSx SINE Alu 1 309 -3 2111 97 3 3 chr6 168007112 168007411 -14407831 + AluSc SINE Alu 2 300 -9 1490 134 34 110 chr6 168008336 168008664 -14406578 + AluJo SINE Alu 1 303 -9 248 235 39 0 chr6 168009576 168009627 -14405615 + Tigger5 DNA MER2_type 3 55 -2268 317 155 107 83 chr6 168009637 168009721 -14405521 + Tigger5 DNA MER2_type 2237 2322 -1 1780 119 23 0 chr6 168010431 168010692 -14404550 + AluSx SINE Alu 31 297 -15 494 223 129 59 chr6 168010779 168010981 -14404261 + MER106A DNA MER1_type 21 236 0 1183 169 120 88 chr6 168011552 168011996 -14403246 + LTR56 LTR ERV1 9 437 0 2319 86 0 0 chr6 168012390 168012693 -14402549 + AluSc SINE Alu 1 303 -6 217 306 112 41 chr6 168013062 168013160 -14402082 - MIR3 SINE MIR -6 202 98 2492 56 0 0 chr6 168013250 168013553 -14401689 + AluY SINE Alu 1 303 -8 2009 99 11 11 chr6 168013670 168013954 -14401288 + AluSx SINE Alu 1 284 -28 1479 125 0 0 chr6 168014243 168014459 -14400783 - AluSq SINE Alu -45 268 53 1744 145 0 43 chr6 168015147 168015450 -14399792 - AluJb SINE Alu -22 290 1 2137 118 0 0 chr6 168016522 168016819 -14398423 - AluJb SINE Alu -15 297 1 1473 172 45 7 chr6 168017740 168018030 -14397212 + AluJo SINE Alu 11 311 -1 1566 201 0 10 chr6 168018178 168018351 -14396891 - AluSq SINE Alu -7 306 133 7427 29 15 0 chr6 168018351 168019955 -14395287 - L1PA4 LINE L1 0 6155 4525 2222 67 0 11 chr6 168019955 168020240 -14395002 - AluY SINE Alu -29 282 1 1566 201 0 10 chr6 168020240 168020374 -14394868 - AluSq SINE Alu -178 135 1 753 22 0 0 chr6 168020814 168020903 -14394339 - L1P LINE L1 -1123 5023 4935 994 149 6 0 chr6 168021766 168021981 -14393261 - AluSg/x SINE Alu 0 338 123 2203 60 0 14 chr6 168022395 168022678 -14392564 + AluY SINE Alu 20 298 -13 1578 190 14 0 chr6 168022893 168023177 -14392065 + AluJo SINE Alu 3 290 -22 1854 132 0 16 chr6 168023189 168023500 -14391742 + AluSx SINE Alu 6 311 -1 399 314 47 57 chr6 168023610 168023821 -14391421 + HAL1b LINE L1 390 597 -751 1935 102 11 4 chr6 168023821 168024095 -14391147 - AluSx SINE Alu -21 291 16 399 314 47 57 chr6 168024095 168024269 -14390973 + HAL1b LINE L1 597 771 -577 1680 89 124 12 chr6 168024369 168024627 -14390615 - AluSx SINE Alu -16 296 10 2315 61 0 7 chr6 168025015 168025311 -14389931 + AluY SINE Alu 1 294 -17 1899 121 24 3 chr6 168025322 168025619 -14389623 - AluSx SINE Alu -9 303 1 643 186 8 39 chr6 168026167 168026296 -14388946 - FLAM_A SINE Alu -5 128 4 2126 95 3 0 chr6 168027590 168027896 -14387346 + AluSq SINE Alu 1 307 0 380 315 74 13 chr6 168027950 168028102 -14387140 + MIR SINE MIR 18 176 -62 1586 167 62 4 chr6 168030019 168030295 -14384947 - AluJo SINE Alu -20 292 1 349 258 72 72 chr6 168030837 168031004 -14384238 + MIR SINE MIR 53 219 -43 2215 101 7 0 chr6 168031550 168031858 -14383384 - AluSx SINE Alu 0 312 3 1813 168 146 7 chr6 168034082 168034493 -14380749 - Charlie4a DNA MER1_type 0 508 41 25 0 0 0 chr6 168034547 168034572 -14380670 + AT_rich Low_complexity Low_complexity 1 25 0 1669 153 42 0 chr6 168035049 168035337 -14379905 - AluJb SINE Alu -12 300 1 242 200 180 0 chr6 168035768 168035818 -14379424 - L2 LINE L2 0 3313 3255 2190 80 36 0 chr6 168035827 168036129 -14379113 - AluSq SINE Alu 0 313 1 1282 97 6 0 chr6 168036469 168036645 -14378597 + AluSx SINE Alu 3 179 -133 253 286 67 101 chr6 168037212 168037260 -14377982 - MER5A DNA MER1_type -13 176 128 1976 131 7 0 chr6 168037260 168037557 -14377685 - AluSx SINE Alu -13 299 1 253 286 67 101 chr6 168037557 168037686 -14377556 - MER5A DNA MER1_type -61 128 5 31 26 0 0 chr6 168037915 168037953 -14377289 + AT_rich Low_complexity Low_complexity 1 38 0 2027 134 0 0 chr6 168038678 168038970 -14376272 + AluSx SINE Alu 11 302 -10 466 314 20 10 chr6 168039509 168039713 -14375529 + L1ME4a LINE L1 5721 5926 -195 318 205 26 0 chr6 168039720 168039798 -14375444 + MER116 DNA Mariner 1 80 0 343 286 79 16 chr6 168039871 168039997 -14375245 + L1ME4a LINE L1 5948 6081 -40 931 122 0 0 chr6 168040017 168040140 -14375102 - FLAM_C SINE Alu -9 124 2 794 262 98 64 chr6 168040204 168040799 -14374443 + L1ME4a LINE L1 5502 6116 -5 253 376 17 17 chr6 168040891 168041072 -14374170 - L2 LINE L2 -740 2574 2394 1664 204 44 7 chr6 168041089 168041509 -14373733 + MLT1F LTR MaLR 19 541 -1 315 291 51 8 chr6 168041572 168041689 -14373553 + L1MCc LINE L1 19 140 -6283 247 226 119 0 chr6 168041691 168041775 -14373467 + LTR50 LTR ERVL 110 203 -592 235 225 45 56 chr6 168041798 168041887 -14373355 + LTR50 LTR ERVL 595 682 -113 793 213 0 12 chr6 168042968 168043128 -14372114 + AluYa8 SINE Alu 124 281 -29 238 246 16 0 chr6 168043343 168043404 -14371838 + MER20B DNA MER1_type 519 580 -203 2264 109 0 0 chr6 168043582 168043894 -14371348 - AluSx SINE Alu 0 312 1 2424 58 0 0 chr6 168044300 168044594 -14370648 - AluY SINE Alu -17 294 1 552 286 42 42 chr6 168045154 168045392 -14369850 + MIR SINE MIR 19 256 -6 187 300 50 17 chr6 168045967 168046027 -14369215 - L2 LINE L2 -2 3311 3250 364 333 75 15 chr6 168046249 168046450 -14368792 + MIR SINE MIR 32 244 -18 273 293 147 27 chr6 168046659 168046809 -14368433 - L2 LINE L2 -9 3263 3096 2260 107 7 0 chr6 168047514 168047814 -14367428 - AluSp SINE Alu -11 302 1 410 278 73 13 chr6 168048021 168048172 -14367070 + MER69A DNA AcHobo 1 160 -17 2352 86 10 3 chr6 168048198 168048490 -14366752 + AluSg SINE Alu 1 294 -16 2206 129 0 3 chr6 168048490 168048800 -14366442 + AluY SINE Alu 1 309 -2 2347 112 0 0 chr6 168048810 168049115 -14366127 + AluSx SINE Alu 1 305 -7 207 0 0 0 chr6 168049122 168049145 -14366097 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2174 72 22 11 chr6 168049425 168049727 -14365515 - AluSc SINE Alu 0 305 1 572 279 73 0 chr6 168049793 168049958 -14365284 - MIR SINE MIR -3 259 83 2170 120 0 26 chr6 168050068 168050377 -14364865 - AluSx SINE Alu -11 301 1 712 265 57 62 chr6 168051497 168051833 -14363409 + MLT1I LTR MaLR 73 406 -3 2593 58 0 0 chr6 168052419 168052728 -14362514 - AluY SINE Alu -2 309 1 2393 91 3 0 chr6 168052730 168053026 -14362216 - AluSp SINE Alu -16 297 1 327 314 0 0 chr6 168053571 168053657 -14361585 + L2 LINE L2 3186 3271 -1 632 245 144 57 chr6 168053914 168054022 -14361220 + MER20B DNA MER1_type 214 311 -472 2509 70 0 16 chr6 168054022 168054338 -14360904 + AluY SINE Alu 1 311 0 632 245 144 57 chr6 168054338 168054612 -14360630 + MER20B DNA MER1_type 311 629 -154 2379 104 0 16 chr6 168054746 168055063 -14360179 - AluSx SINE Alu 0 312 1 400 130 0 0 chr6 168055177 168055231 -14360011 - Alu SINE Alu -258 55 2 216 103 0 0 chr6 168055232 168055261 -14359981 + L2 LINE L2 2615 2643 -671 2212 147 19 19 chr6 168055261 168055636 -14359606 + THE1C LTR MaLR 1 375 0 3944 123 143 1 chr6 168055638 168056323 -14358919 + THE1C-int LTR MaLR 3 784 -796 311 301 81 23 chr6 168056423 168056596 -14358646 + MLT1H LTR MaLR 123 305 -244 253 274 71 18 chr6 168056608 168056721 -14358521 + MLT1F LTR MaLR 248 366 -176 281 275 25 0 chr6 168056890 168056970 -14358272 - HAL1 LINE L1 -1845 662 581 2485 71 0 3 chr6 168057008 168057305 -14357937 - AluY SINE Alu -13 298 3 1229 114 6 0 chr6 168057306 168057472 -14357770 - AluSg/x SINE Alu -12 300 134 2455 81 0 7 chr6 168057472 168057780 -14357462 - AluSq SINE Alu -7 306 1 1785 174 0 14 chr6 168057791 168058078 -14357164 - AluJo SINE Alu -24 288 6 2400 74 0 43 chr6 168058744 168059067 -14356175 + AluY SINE Alu 1 309 -2 195 311 78 0 chr6 168059460 168059550 -14355692 - MIR SINE MIR -151 111 15 2397 99 0 3 chr6 168060938 168061250 -14353992 - AluSq SINE Alu -2 311 1 348 250 0 0 chr6 168061302 168061370 -14353872 + MER5B DNA MER1_type 72 139 -39 1236 157 38 51 chr6 168061377 168061613 -14353629 + AluJo SINE Alu 64 296 -16 217 209 0 23 chr6 168061614 168061657 -14353585 - MER5B DNA MER1_type -132 46 5 1495 141 0 0 chr6 168061672 168061885 -14353357 - AluJb SINE Alu -99 213 1 870 267 20 13 chr6 168061888 168062161 -14353081 - L1ME LINE L1 -399 5771 5490 277 330 9 28 chr6 168062496 168062605 -14352637 - MIR SINE MIR -74 134 28 744 291 164 11 chr6 168063326 168063790 -14351452 + L2 LINE L2 2719 3268 -4 1907 145 19 19 chr6 168063929 168064240 -14351002 + AluJb SINE Alu 1 311 -1 187 309 29 15 chr6 168064665 168064733 -14350509 - MIR3 SINE MIR -42 166 98 370 269 107 13 chr6 168065442 168065591 -14349651 - LTR33 LTR ERVL -348 173 11 1646 171 27 23 chr6 168065864 168066163 -14349079 + AluJb SINE Alu 1 300 -12 417 70 0 0 chr6 168066163 168066220 -14349022 + (GGGGA)n Simple_repeat Simple_repeat 1 57 0 215 330 128 0 chr6 168066255 168066364 -14348878 - MIR SINE MIR -65 143 21 11821 120 18 1 chr6 168066436 168069068 -14346174 - L1PA10 LINE L1 0 6168 3527 301 344 175 24 chr6 168069883 168070174 -14345068 - L2 LINE L2 -1 3271 2937 259 296 152 21 chr6 168070246 168070489 -14344753 - L2 LINE L2 -460 2854 2580 2097 142 0 0 chr6 168071783 168072078 -14343164 + AluSc SINE Alu 1 295 -14 1978 149 10 7 chr6 168072359 168072668 -14342574 + AluJb SINE Alu 1 310 -2 2229 124 0 6 chr6 168073115 168073429 -14341813 - AluSx SINE Alu 0 312 1 449 253 316 0 chr6 168073559 168073717 -14341525 - MIR SINE MIR -15 247 40 1866 135 4 0 chr6 168073823 168074090 -14341152 - AluSg SINE Alu -8 302 35 2398 105 0 0 chr6 168074091 168074397 -14340845 - AluY SINE Alu -5 306 1 1640 205 115 0 chr6 168074655 168075065 -14340177 - MLT1C LTR MaLR -10 457 1 324 0 0 0 chr6 168075405 168075441 -14339801 + (TG)n Simple_repeat Simple_repeat 2 37 0 320 238 0 0 chr6 168075540 168075603 -14339639 - MER81 DNA DNA -51 63 1 643 231 35 15 chr6 168076016 168076219 -14339023 - MER20B DNA MER1_type -31 752 546 860 156 6 81 chr6 168076885 168077058 -14338184 - FAM SINE Alu 0 49 1 190 288 95 101 chr6 168077785 168077841 -14337401 + L2 LINE L2 1018 1073 -2241 539 179 32 116 chr6 168077841 168077899 -14337343 - MER5B DNA MER1_type -4 174 113 2311 96 0 10 chr6 168077899 168078212 -14337030 + AluSg SINE Alu 1 310 0 1982 169 0 0 chr6 168078222 168078524 -14336718 + AluJb SINE Alu 1 302 -10 539 179 32 116 chr6 168078524 168078644 -14336598 - MER5B DNA MER1_type -74 104 1 190 288 95 101 chr6 168078644 168078913 -14336329 + L2 LINE L2 1073 1341 -1973 705 92 0 0 chr6 168079040 168079138 -14336104 + AluSp/q SINE Alu 214 311 -2 505 198 10 0 chr6 168079649 168079745 -14335497 + MER81 DNA DNA 2 98 -16 2438 85 7 0 chr6 168080331 168080637 -14334605 - AluSg SINE Alu -2 308 1 2632 126 13 60 chr6 168080768 168081235 -14334007 - MER65A LTR ERV1 0 445 1 917 219 20 5 chr6 168081235 168081436 -14333806 - MER65A-int LTR ERV1 -1 4870 4667 975 69 0 0 chr6 168081451 168081567 -14333675 - AluSq/x SINE Alu -196 117 2 1976 152 0 3 chr6 168082557 168082853 -14332389 - AluJb SINE Alu -17 295 1 219 311 179 9 chr6 168084399 168084505 -14330737 + MIR3 SINE MIR 35 158 -50 256 304 49 10 chr6 168084695 168084797 -14330445 + MIR SINE MIR 132 237 -25 1909 151 33 39 chr6 168084943 168085126 -14330116 - MER47A DNA MER2_type -1957 366 184 1530 180 18 4 chr6 168085126 168085404 -14329838 - AluJo SINE Alu -9 303 22 1909 151 33 39 chr6 168085404 168085584 -14329658 - MER47A DNA MER2_type -2139 184 5 196 232 74 63 chr6 168086855 168086950 -14328292 + MIR SINE MIR 22 117 -145 213 211 0 0 chr6 168087358 168087410 -14327832 + (CA)n Simple_repeat Simple_repeat 1 52 0 305 298 136 34 chr6 168087926 168088315 -14326927 + L2 LINE L2 2842 3272 0 296 294 11 17 chr6 168088425 168088605 -14326637 + (TGAG)n Simple_repeat Simple_repeat 2 180 0 225 237 0 0 chr6 168088673 168088732 -14326510 + G-rich Low_complexity Low_complexity 4 62 0 311 263 30 0 chr6 168088733 168088866 -14326376 + (TGAG)n Simple_repeat Simple_repeat 4 140 0 276 305 53 11 chr6 168090964 168091059 -14324183 + MIR3 SINE MIR 108 206 -2 2211 124 0 3 chr6 168091578 168091876 -14323366 + AluSx SINE Alu 2 298 -14 2056 206 146 4 chr6 168092943 168093483 -14321759 + MER44D DNA MER2_type 1 617 -88 3337 146 46 12 chr6 168094248 168094809 -14320433 + LTR19B LTR ERV1 1 580 0 5940 111 30 16 chr6 168094809 168095749 -14319493 + LTR19B-int LTR ERV1 1 938 -4648 2184 96 3 3 chr6 168095749 168096050 -14319192 - AluSc SINE Alu -8 301 1 5940 111 30 16 chr6 168096050 168096123 -14319119 + LTR19B-int LTR ERV1 938 1008 -4578 33074 58 7 4 chr6 168096123 168097307 -14317935 + L1PA5 LINE L1 1137 2316 -3838 207 0 0 0 chr6 168097307 168097330 -14317912 + (CAA)n Simple_repeat Simple_repeat 2 24 0 33074 58 7 4 chr6 168097330 168101149 -14314093 + L1PA5 LINE L1 2316 6151 -3 2428 204 24 42 chr6 168101155 168101709 -14313533 + LTR19B-int LTR ERV1 4852 5395 -2023 4765 112 17 4 chr6 168101768 168102475 -14312767 + LTR19B-int LTR ERV1 3783 4498 -1088 * 6317 94 8 3 chr6 168102473 168103336 -14311906 + LTR19B-int LTR ERV1 4719 5585 -1 3159 145 36 46 chr6 168103337 168103923 -14311319 + LTR19B LTR ERV1 1 580 0 388 252 17 25 chr6 168106325 168106444 -14308798 + Tigger7 DNA MER2_type 2370 2487 0 2044 125 0 0 chr6 168106526 168106823 -14308419 - AluJb SINE Alu -15 297 1 1587 174 35 0 chr6 168107588 168107876 -14307366 - AluJo SINE Alu -14 298 1 23 0 0 0 chr6 168109562 168109585 -14305657 + AT_rich Low_complexity Low_complexity 1 23 0 285 29 0 0 chr6 168110108 168110142 -14305100 + (CA)n Simple_repeat Simple_repeat 2 35 0 1075 119 0 0 chr6 168110142 168110301 -14304941 - AluSg/x SINE Alu -12 300 142 195 184 0 0 chr6 168110917 168110955 -14304287 + (CA)n Simple_repeat Simple_repeat 1 38 0 293 236 335 16 chr6 168110962 168111153 -14304089 + L1MEc LINE L1 132 383 -6013 1246 250 82 46 chr6 168111186 168111743 -14303499 + L1MEc LINE L1 543 1114 -5103 1569 181 66 12 chr6 168111743 168112063 -14303179 + MER1B DNA MER1_type 1 337 0 1246 250 82 46 chr6 168112063 168112382 -14302860 + L1MEc LINE L1 1114 1420 -4797 1315 147 132 23 chr6 168112392 168112657 -14302585 + AluJo SINE Alu 1 294 -18 1969 225 121 36 chr6 168112670 168113272 -14301970 + L1ME1 LINE L1 5414 6241 -93 450 263 73 100 chr6 168113330 168113495 -14301747 + MIR SINE MIR 11 179 -83 2120 110 7 0 chr6 168113495 168113795 -14301447 - AluSg SINE Alu -8 302 1 1501 119 9 0 chr6 168113797 168114007 -14301235 - AluSx SINE Alu -100 212 1 450 263 73 100 chr6 168114007 168114097 -14301145 + MIR SINE MIR 180 262 0 2316 96 0 3 chr6 168114503 168114815 -14300427 + AluSx SINE Alu 1 311 -1 1628 107 71 18 chr6 168114824 168115104 -14300138 + AluSp SINE Alu 1 295 -18 2219 74 40 0 chr6 168116317 168116652 -14298590 + AluY SINE Alu 1 347 0 789 205 99 121 chr6 168117321 168117477 -14297765 + MSTD LTR MaLR 1 159 -237 1527 160 17 35 chr6 168117477 168117765 -14297477 + AluJb SINE Alu 6 288 -24 789 205 99 121 chr6 168117765 168118013 -14297229 + MSTD LTR MaLR 159 396 0 2724 77 8 0 chr6 168118304 168118656 -14296586 + THE1A LTR MaLR 1 355 0 2275 82 7 0 chr6 168119059 168119365 -14295877 + AluY SINE Alu 1 308 -3 1825 227 46 11 chr6 168119375 168119940 -14295302 - L1ME3A LINE L1 -48 6122 5447 3653 129 70 51 chr6 168120262 168120300 -14294942 + L1MC1 LINE L1 5634 5670 -663 2039 105 37 0 chr6 168120300 168120595 -14294647 + AluSq SINE Alu 1 306 -7 3653 129 70 51 chr6 168120595 168120879 -14294363 + L1MC1 LINE L1 5670 5947 -386 2208 87 20 0 chr6 168120879 168121178 -14294064 + AluSx SINE Alu 1 305 -7 3653 129 70 51 chr6 168121178 168121526 -14293716 + L1MC1 LINE L1 5947 6318 -15 610 270 120 18 chr6 168122058 168122332 -14292910 - L1ME LINE L1 -343 5778 5477 1641 145 0 68 chr6 168122352 168122547 -14292695 - AluJo SINE Alu -23 289 121 1485 126 0 51 chr6 168122547 168122802 -14292440 + AluSx SINE Alu 55 296 -16 1641 145 0 68 chr6 168122802 168122916 -14292326 - AluJo SINE Alu -191 121 1 320 267 20 40 chr6 168123058 168123159 -14292083 - L2 LINE L2 -1 3312 3214 1722 212 71 38 chr6 168124131 168124517 -14290725 + L1MB7 LINE L1 5713 6119 -65 2155 77 0 24 chr6 168124517 168124835 -14290407 + AluSc SINE Alu 1 311 0 1722 212 71 38 chr6 168124835 168124899 -14290343 + L1MB7 LINE L1 6119 6179 -5 322 245 271 45 chr6 168124922 168125077 -14290165 - MIR SINE MIR -71 191 2 219 257 346 0 chr6 168125083 168125219 -14290023 + L3 LINE CR1 1329 1511 -66 2194 100 10 3 chr6 168126531 168126841 -14288401 + AluSq SINE Alu 1 312 -1 203 380 87 0 chr6 168127495 168127587 -14287655 + MIR SINE MIR 47 146 -116 866 163 0 0 chr6 168127650 168127779 -14287463 + FLAM_A SINE Alu 1 129 -4 311 216 40 14 chr6 168128089 168128163 -14287079 - MER81 DNA DNA -32 82 7 419 162 0 0 chr6 168128544 168128612 -14286630 - AluJ/FLAM SINE Alu -243 69 2 749 326 9 9 chr6 168128671 168128898 -14286344 + MIR SINE MIR 2 228 -34 21 36 0 0 chr6 168129143 168129171 -14286071 + GC_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 168129485 168129517 -14285725 + GC_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 168130268 168130290 -14284952 + AT_rich Low_complexity Low_complexity 1 22 0 209 302 0 83 chr6 168130599 168130695 -14284547 + MER5B DNA MER1_type 82 176 -13 2692 10 0 0 chr6 168130938 168131238 -14284004 - AluYb8 SINE Alu -18 300 1 190 237 0 0 chr6 168131469 168131507 -14283735 + L2 LINE L2 3032 3069 -203 2297 67 0 0 chr6 168131644 168131929 -14283313 + AluY SINE Alu 1 285 -26 405 0 0 0 chr6 168131929 168131974 -14283268 + (CA)n Simple_repeat Simple_repeat 2 46 0 1064 268 168 10 chr6 168131975 168132463 -14282779 - HAL1 LINE L1 -371 2136 1572 2246 92 13 0 chr6 168132466 168132772 -14282470 - AluSx SINE Alu -1 311 2 1060 171 0 0 chr6 168133225 168133400 -14281842 + FRAM SINE Alu 1 168 -8 223 349 0 0 chr6 168133529 168133595 -14281647 + (TG)n Simple_repeat Simple_repeat 2 67 0 369 250 167 36 chr6 168134274 168134442 -14280800 - L1ME4a LINE L1 -2 6119 5930 717 161 77 0 chr6 168134538 168134681 -14280561 - MER105 DNA DNA -5 199 46 740 183 117 22 chr6 168134682 168134862 -14280380 - MER20 DNA MER1_type -1 218 22 280 180 20 0 chr6 168134868 168134918 -14280324 - MER105 DNA DNA -153 51 1 348 201 70 0 chr6 168135000 168135087 -14280155 - L1ME4a LINE L1 -372 5749 5671 2238 80 10 0 chr6 168135401 168135701 -14279541 - AluY SINE Alu -8 303 1 2070 104 0 3 chr6 168135981 168136268 -14278974 - AluSg SINE Alu -24 286 1 1309 175 0 4 chr6 168136532 168136760 -14278482 - AluJb SINE Alu -7 305 79 2148 92 3 7 chr6 168137446 168137749 -14277493 - AluY SINE Alu -9 302 1 256 122 102 0 chr6 168138805 168138854 -14276388 - L1MB4 LINE L1 -1 6179 6126 2028 86 4 0 chr6 168138899 168139167 -14276075 - AluSp SINE Alu -39 274 6 2692 142 52 41 chr6 168139171 168139474 -14275768 - L1MB3 LINE L1 -40 6143 5845 2158 101 10 0 chr6 168139474 168139781 -14275461 - AluSq SINE Alu -3 310 1 2692 142 52 41 chr6 168139781 168139942 -14275300 - L1MB3 LINE L1 -338 5845 5670 2218 106 0 0 chr6 168139942 168140244 -14274998 - AluSq SINE Alu -11 302 1 2692 142 52 41 chr6 168140244 168140313 -14274929 - L1MB3 LINE L1 -513 5670 5603 11060 156 86 20 chr6 168140314 168141100 -14274142 - L1M4c LINE L1 -3985 2578 1845 2358 87 3 0 chr6 168141100 168141412 -14273830 - AluSp SINE Alu 0 313 1 11060 156 86 20 chr6 168141412 168142138 -14273104 - L1M4c LINE L1 -4718 1845 1168 2430 73 0 0 chr6 168142138 168142440 -14272802 - AluY SINE Alu -9 302 1 11060 156 86 20 chr6 168142440 168143191 -14272051 - L1M4c LINE L1 -5395 1168 17 1724 101 58 16 chr6 168143603 168143860 -14271382 + AluSq SINE Alu 1 268 -45 265 238 62 50 chr6 168143896 168143976 -14271266 + MIR3 SINE MIR 110 190 -18 1972 175 107 2 chr6 168144018 168144430 -14270812 + MLT2B1 LTR ERVL 1 455 -65 268 123 0 35 chr6 168144430 168144487 -14270755 + (CAGA)n Simple_repeat Simple_repeat 1 55 0 290 128 0 0 chr6 168144488 168144535 -14270707 + MLT2B1 LTR ERVL 472 518 -2 251 261 130 0 chr6 168145182 168145251 -14269991 + MIR3 SINE MIR 89 166 -42 222 176 0 0 chr6 168146162 168146213 -14269029 + (CA)n Simple_repeat Simple_repeat 1 51 0 305 220 190 1 chr6 168146573 168146718 -14268524 - MER58B DNA MER1_type -19 322 37 270 287 75 11 chr6 168147320 168147414 -14267828 - MIR3 SINE MIR -28 180 81 1425 120 0 15 chr6 168147623 168147823 -14267419 + AluSc SINE Alu 1 197 -112 2187 79 7 21 chr6 168147831 168148111 -14267131 + AluY SINE Alu 6 283 -28 180 0 0 0 chr6 168148111 168148131 -14267111 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1215 133 0 17 chr6 168148141 168148322 -14266920 + AluSc SINE Alu 132 309 0 498 234 9 0 chr6 168148406 168148517 -14266725 + L1MD3 LINE L1 7793 7904 -91 2409 72 0 29 chr6 168148680 168148987 -14266255 + AluY SINE Alu 1 298 -13 2212 93 13 32 chr6 168149317 168149629 -14265613 + AluSx SINE Alu 1 306 -6 917 175 7 0 chr6 168150092 168150246 -14264996 + FRAM SINE Alu 12 166 -10 409 278 86 12 chr6 168151369 168151531 -14263711 - MIR SINE MIR -58 204 31 206 91 121 43 chr6 168152499 168152734 -14262508 + (CACCT)n Simple_repeat Simple_repeat 1 253 0 486 324 87 16 chr6 168152748 168153128 -14262114 + L2 LINE L2 2050 2456 -858 353 362 37 0 chr6 168154444 168154607 -14260635 + MIR SINE MIR 60 228 -34 2014 114 15 0 chr6 168155143 168155407 -14259835 + AluSx SINE Alu 1 268 -44 301 274 112 41 chr6 168155669 168155777 -14259465 + MIR SINE MIR 2 101 -161 2434 90 0 0 chr6 168155777 168156078 -14259164 + AluSx SINE Alu 1 301 -11 301 274 112 41 chr6 168156078 168156166 -14259076 + MIR SINE MIR 101 212 -50 649 318 87 12 chr6 168156203 168156445 -14258797 + MIR SINE MIR 3 262 0 261 0 0 0 chr6 168156745 168156774 -14258468 + (CA)n Simple_repeat Simple_repeat 2 30 0 220 229 16 0 chr6 168159053 168159114 -14256128 + (CAG)n Simple_repeat Simple_repeat 3 64 0 22 0 0 0 chr6 168159202 168159224 -14256018 + GC_rich Low_complexity Low_complexity 1 22 0 782 282 133 21 chr6 168160468 168160798 -14254444 + MER57B LTR ERV1 12 378 -56 399 154 77 0 chr6 168160772 168160850 -14254392 + LTR54 LTR ERV1 427 510 0 * 382 226 26 26 chr6 168160850 168160965 -14254277 - Charlie8 DNA MER1_type -2300 117 3 185 306 88 29 chr6 168161101 168161271 -14253971 - L3 LINE CR1 -220 1357 1178 * 303 304 104 22 chr6 168161255 168161390 -14253852 - L2 LINE L2 0 3313 3168 2044 120 11 0 chr6 168161410 168161715 -14253527 + AluSx SINE Alu 5 312 0 1728 147 19 0 chr6 168161842 168162101 -14253141 - AluJb SINE Alu -21 291 28 2688 124 30 7 chr6 168162135 168162181 -14253061 + MER65A LTR ERV1 1 44 -401 1840 140 82 0 chr6 168162181 168162460 -14252782 + AluSx SINE Alu 1 302 -10 2688 124 30 7 chr6 168162460 168162847 -14252395 + MER65A LTR ERV1 44 444 -1 918 178 130 53 chr6 168162962 168163429 -14251813 + MER65A-int LTR ERV1 115 667 -4204 181 255 0 106 chr6 168163429 168163523 -14251719 + L3b LINE CR1 1416 1499 -84 1061 220 45 22 chr6 168163523 168163791 -14251451 + MER65A-int LTR ERV1 748 1021 -3850 4931 168 83 58 chr6 168163829 168164588 -14250654 + MER65A-int LTR ERV1 1105 1843 -3028 1013 191 9 42 chr6 168164588 168164701 -14250541 - MER6B DNA MER2_type -656 209 105 2172 119 3 19 chr6 168164701 168164835 -14250407 + AluSq SINE Alu 1 136 -177 2382 84 0 0 chr6 168164835 168165144 -14250098 + AluSq SINE Alu 1 309 0 2172 119 3 19 chr6 168165144 168165320 -14249922 + AluSq SINE Alu 136 307 -6 1013 191 9 42 chr6 168165320 168165421 -14249821 - MER6B DNA MER2_type -760 105 2 4931 168 83 58 chr6 168165421 168166017 -14249225 + MER65A-int LTR ERV1 1843 2494 -2377 1878 155 10 7 chr6 168166017 168166313 -14248929 - AluJb SINE Alu -15 297 1 1043 142 22 40 chr6 168166518 168166744 -14248498 + MER65A-int LTR ERV1 3511 3732 -2866 939 233 65 59 chr6 168166828 168167472 -14247770 + MER65A-int LTR ERV1 2557 3023 -1913 * 1225 229 78 69 chr6 168167452 168167961 -14247281 + MER65A-int LTR ERV1 4248 4764 -1567 2224 106 3 7 chr6 168167961 168168254 -14246988 + AluSc SINE Alu 1 292 -17 1225 229 78 69 chr6 168168254 168168311 -14246931 + MER65A-int LTR ERV1 4764 4819 -1512 353 91 36 0 chr6 168168311 168168366 -14246876 - Alu SINE Alu 0 300 244 301 345 0 0 chr6 168168387 168168471 -14246771 + MER65-int LTR ERV1 3654 3737 -1134 210 143 0 0 chr6 168168574 168168609 -14246633 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1954 151 7 3 chr6 168168611 168168902 -14246340 - AluJb SINE Alu -20 292 1 1617 96 0 0 chr6 168168913 168169134 -14246108 - AluSg/x SINE Alu 0 306 86 332 128 0 0 chr6 168169135 168169182 -14246060 - AluJ/FRAM SINE Alu -24 278 232 298 257 64 32 chr6 168169240 168169427 -14245815 - L1M4 LINE L1 -2462 3684 3492 561 289 68 30 chr6 168169439 168169674 -14245568 - L1M4 LINE L1 -2757 3389 3146 1947 139 3 17 chr6 168169680 168169991 -14245251 + AluJo SINE Alu 1 307 0 269 265 39 29 chr6 168170363 168170465 -14244777 + L2 LINE L2 3210 3312 -1 447 238 0 0 chr6 168170604 168170705 -14244537 - MER63C DNA MER1_type -5 925 825 * 2177 181 84 75 chr6 168170687 168171357 -14243885 - MER63C DNA MER1_type -253 677 2 255 202 202 21 chr6 168172039 168172133 -14243109 - MER39 LTR ERV1 0 707 597 1523 242 36 0 chr6 168172134 168172464 -14242778 + MER7A DNA MER2_type 1 340 -6 718 231 58 84 chr6 168172457 168172520 -14242722 - MER39 LTR ERV1 -108 594 531 * 2183 82 71 0 chr6 168172520 168172802 -14242440 - AluSx SINE Alu -10 302 1 718 231 58 84 chr6 168172802 168173088 -14242154 - MER39 LTR ERV1 -171 531 67 2290 79 4 0 chr6 168173388 168173667 -14241575 + AluSg SINE Alu 1 280 -30 2428 100 0 0 chr6 168176519 168176819 -14238423 + AluSq SINE Alu 5 304 -9 2668 34 0 0 chr6 168177791 168178085 -14237157 - AluY SINE Alu -17 294 1 390 284 20 20 chr6 168179669 168179817 -14235425 - MIR3 SINE MIR -23 185 38 2298 113 3 6 chr6 168180955 168181266 -14233976 + AluSq SINE Alu 1 310 -3 277 41 0 41 chr6 168181957 168182006 -14233236 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 2631 58 3 0 chr6 168183614 168183922 -14231320 + AluY SINE Alu 1 309 -2 637 220 71 0 chr6 168183956 168184124 -14231118 + L1MC5 LINE L1 7249 7428 -533 180 111 0 0 chr6 168184317 168184344 -14230898 + (A)n Simple_repeat Simple_repeat 1 27 0 260 245 10 112 chr6 168184618 168184654 -14230588 + L2 LINE L2 3225 3263 -50 926 224 33 0 chr6 168184654 168184868 -14230374 - MER58A DNA MER1_type 0 224 4 260 245 10 112 chr6 168184868 168184929 -14230313 + L2 LINE L2 3263 3312 -1 269 224 112 62 chr6 168185079 168185258 -14229984 + HAL1 LINE L1 1979 2166 -341 320 254 110 0 chr6 168185286 168185404 -14229838 + HAL1 LINE L1 2212 2342 -165 813 152 0 15 chr6 168185410 168185542 -14229700 + FLAM_C SINE Alu 1 130 -3 2300 75 7 33 chr6 168185546 168185852 -14229390 + AluY SINE Alu 1 298 -13 1883 109 33 62 chr6 168189114 168189418 -14225824 - AluSx SINE Alu -17 295 1 1479 198 7 25 chr6 168193053 168193336 -14221906 + AluJo SINE Alu 5 282 -30 2177 115 10 0 chr6 168194345 168194641 -14220601 - AluSp SINE Alu -14 299 1 1994 135 36 20 chr6 168194849 168195153 -14220089 + AluJb SINE Alu 1 309 -3 26 30 0 0 chr6 168195829 168195862 -14219380 + AT_rich Low_complexity Low_complexity 1 33 0 972 159 0 0 chr6 168196912 168197063 -14218179 + FRAM SINE Alu 1 150 -26 228 234 110 97 chr6 168197366 168197511 -14217731 + MIR SINE MIR 110 256 -6 2715 230 90 48 chr6 168197822 168198099 -14217143 + L1ME2 LINE L1 4904 5168 -996 2147 105 0 3 chr6 168198099 168198403 -14216839 + AluSg SINE Alu 1 303 -7 2715 230 90 48 chr6 168198403 168198466 -14216776 + L1ME2 LINE L1 5168 5227 -937 1930 99 4 7 chr6 168198466 168198738 -14216504 + AluSc SINE Alu 1 271 -38 1005 0 0 23 chr6 168198738 168198866 -14216376 + (GAAA)n Simple_repeat Simple_repeat 3 127 0 2715 230 90 48 chr6 168198866 168199727 -14215515 + L1ME2 LINE L1 5226 6158 -6 2009 105 7 0 chr6 168199837 168200141 -14215101 - AluSc SINE Alu 0 306 1 800 176 0 8 chr6 168202180 168202311 -14212931 - FLAM_C SINE Alu -3 130 1 388 300 100 0 chr6 168202322 168202452 -14212790 + L2 LINE L2 3171 3313 0 1815 126 3 36 chr6 168202840 168203003 -14212239 - AluSx SINE Alu -21 291 141 1882 126 6 46 chr6 168203003 168203328 -14211914 - AluSx SINE Alu 0 312 1 1815 126 3 36 chr6 168203328 168203465 -14211777 - AluSx SINE Alu -171 141 1 22 35 0 0 chr6 168203476 168203505 -14211737 + AT_rich Low_complexity Low_complexity 1 29 0 1179 229 73 48 chr6 168203536 168203733 -14211509 - MLT1B LTR MaLR -6 384 172 2013 68 38 0 chr6 168203733 168203998 -14211244 - AluY SINE Alu -21 290 16 1179 229 73 48 chr6 168203998 168204172 -14211070 - MLT1B LTR MaLR -218 172 4 3591 225 77 38 chr6 168204175 168205384 -14209858 - MLT1B-int LTR MaLR -5 1646 1 339 75 0 75 chr6 168205384 168205437 -14209805 - MLT2D LTR ERVL 0 414 366 734 274 84 43 chr6 168205512 168205811 -14209431 - MLT1B LTR MaLR -79 311 1 705 180 23 8 chr6 168205845 168205973 -14209269 + AluJo/FLAM SINE Alu 1 130 -172 397 153 0 69 chr6 168205973 168206045 -14209197 + AluJ/FRAM SINE Alu 225 291 -11 1513 169 13 33 chr6 168206069 168206370 -14208872 + AluJo SINE Alu 1 295 -17 392 289 32 21 chr6 168206445 168206632 -14208610 - MER5A DNA MER1_type 0 189 1 1526 134 29 40 chr6 168206697 168206973 -14208269 + AluJb SINE Alu 29 301 -11 221 118 20 59 chr6 168208356 168208407 -14206835 - L2 LINE L2 -74 3239 3191 326 343 22 8 chr6 168209397 168209531 -14205711 + MER5B DNA MER1_type 1 136 -42 505 237 9 9 chr6 168210463 168210577 -14204665 + FLAM_C SINE Alu 2 115 -28 195 42 0 0 chr6 168210579 168210603 -14204639 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5435 114 43 11 chr6 168211765 168212599 -14202643 - L1PA15 LINE L1 -2 6163 5303 21 0 0 0 chr6 168212781 168212802 -14202440 + AT_rich Low_complexity Low_complexity 1 21 0 201 261 114 34 chr6 168213020 168213108 -14202134 - MIR SINE MIR -112 150 56 306 269 213 6 chr6 168213553 168213713 -14201529 + L3b LINE CR1 1133 1325 -258 339 316 75 59 chr6 168214985 168215117 -14200125 - L2 LINE L2 -6 3307 3179 1245 165 58 5 chr6 168215117 168215341 -14199901 + MER46A DNA MER2_type 1 236 0 339 316 75 59 chr6 168215341 168215515 -14199727 - L2 LINE L2 -134 3179 2996 1830 135 7 11 chr6 168215901 168216183 -14199059 + AluJo SINE Alu 1 281 -31 1997 112 3 13 chr6 168216200 168216504 -14198738 + AluSq SINE Alu 1 301 -12 267 311 89 0 chr6 168218217 168218307 -14196935 - L2 LINE L2 -7 3265 3168 202 262 95 24 chr6 168219054 168219138 -14196104 + L2 LINE L2 1728 1817 -1497 390 214 45 0 chr6 168219160 168219249 -14195993 + L2 LINE L2 3220 3312 -1 6398 44 15 13 chr6 168219380 168220158 -14195084 + LTR17 LTR ERV1 1 780 0 253 328 34 17 chr6 168220228 168220405 -14194837 + L2 LINE L2 2128 2307 -1007 1900 143 3 7 chr6 168220445 168220745 -14194497 + AluSx SINE Alu 1 299 -13 1878 149 60 26 chr6 168221005 168221355 -14193887 + MLT1A1 LTR MaLR 4 365 0 24 32 0 0 chr6 168221450 168221481 -14193761 + AT_rich Low_complexity Low_complexity 1 31 0 3046 106 38 8 chr6 168221571 168222042 -14193200 + LTR22B LTR ERVK 5 489 -3 260 200 36 0 chr6 168222131 168222186 -14193056 - L2 LINE L2 -4 3268 3212 499 292 261 29 chr6 168222188 168222439 -14192803 - L2 LINE L2 -371 2943 2751 2077 87 10 10 chr6 168222439 168222737 -14192505 + AluSq SINE Alu 1 298 -15 499 292 261 29 chr6 168222737 168223132 -14192110 - L2 LINE L2 -563 2751 2147 386 304 7 22 chr6 168223239 168223377 -14191865 + L2 LINE L2 3136 3271 -1 1334 146 73 18 chr6 168223440 168223714 -14191528 + L1M3 LINE L1 5279 5567 -616 1604 168 31 3 chr6 168223714 168224000 -14191242 + MER49 LTR ERV1 1 294 -629 1405 240 17 42 chr6 168224060 168224419 -14190823 + MER4D LTR ERV1 554 903 0 2139 118 29 6 chr6 168224419 168224759 -14190483 + L1MB2 LINE L1 5561 5908 -275 2954 136 40 72 chr6 168224759 168225312 -14189930 + MER4D LTR ERV1 1 535 -368 629 118 0 9 chr6 168225313 168225510 -14189732 + AluSg SINE Alu 2 278 -31 2274 127 15 51 chr6 168225535 168225930 -14189312 + MER4D LTR ERV1 522 902 -1 1451 164 19 0 chr6 168225930 168226193 -14189049 + L1MB2 LINE L1 5904 6171 0 24 0 0 0 chr6 168226194 168226218 -14189024 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 168226327 168226357 -14188885 + AT_rich Low_complexity Low_complexity 1 30 0 1540 69 28 5 chr6 168226357 168226574 -14188668 - L1PA5 LINE L1 -8 6146 5925 1927 166 131 75 chr6 168226819 168226954 -14188288 + MER34C LTR ERV1 6 132 -453 2277 87 0 13 chr6 168226954 168227266 -14187976 + AluSq SINE Alu 1 308 -5 1927 166 131 75 chr6 168227266 168227330 -14187912 + MER34C LTR ERV1 132 191 -394 2152 102 26 0 chr6 168227330 168227633 -14187609 + AluY SINE Alu 1 311 0 1927 166 131 75 chr6 168227633 168227981 -14187261 + MER34C LTR ERV1 191 585 0 2409 71 3 0 chr6 168228567 168228875 -14186367 - AluSp SINE Alu -4 309 1 27 0 0 0 chr6 168230338 168230365 -14184877 + AT_rich Low_complexity Low_complexity 1 27 0 2353 70 3 0 chr6 168230559 168230858 -14184384 - AluSp SINE Alu -13 300 1 481 162 42 127 chr6 168233103 168233156 -14182086 + LTR48 LTR ERV1 1 57 -730 2141 107 0 7 chr6 168233156 168233454 -14181788 - AluSg SINE Alu -14 296 1 481 162 42 127 chr6 168233454 168233493 -14181749 + LTR48 LTR ERV1 57 80 -707 1398 112 67 36 chr6 168233493 168233716 -14181526 + MER30 DNA MER1_type 1 230 0 481 162 42 127 chr6 168233716 168233764 -14181478 + LTR48 LTR ERV1 80 130 -657 * 1475 191 64 22 chr6 168233759 168234174 -14181068 + LTR48 LTR ERV1 255 787 0 1741 113 0 0 chr6 168234261 168234499 -14180743 - AluSx SINE Alu -15 297 60 425 215 76 56 chr6 168234538 168234682 -14180560 - MIR SINE MIR -114 148 2 2677 26 0 0 chr6 168235928 168236234 -14179008 + AluYb8 SINE Alu 1 306 -12 2090 117 0 0 chr6 168236388 168236688 -14178554 + AluSq SINE Alu 5 304 -9 1082 138 0 0 chr6 168237328 168237488 -14177754 - AluSg/x SINE Alu -16 296 137 2173 94 7 0 chr6 168237488 168237785 -14177457 - AluSg SINE Alu -11 299 1 2253 64 0 61 chr6 168237785 168238110 -14177132 - AluY SINE Alu -5 306 1 2223 91 0 28 chr6 168240183 168240521 -14174721 - AluY SINE Alu 0 329 1 1448 112 12 32 chr6 168241156 168241406 -14173836 + L1MA5A LINE L1 6043 6287 -10 27 49 0 0 chr6 168242839 168242880 -14172362 + AT_rich Low_complexity Low_complexity 1 41 0 228 266 190 0 chr6 168242902 168242981 -14172261 - MIR SINE MIR -16 246 153 237 231 173 58 chr6 168243608 168243712 -14171530 + L2 LINE L2 3195 3310 -3 1244 195 84 92 chr6 168244288 168244657 -14170585 + MLT1A2 LTR MaLR 1 366 -8 333 244 194 46 chr6 168245325 168245542 -14169700 + L2 LINE L2 2123 2371 -943 235 265 132 0 chr6 168245574 168245642 -14169600 + L2 LINE L2 3172 3248 -24 1649 168 0 7 chr6 168246179 168246459 -14168783 + AluJo SINE Alu 1 278 -34 213 36 0 0 chr6 168247025 168247046 -14168196 + (A)n Simple_repeat Simple_repeat 1 24 -4 2568 64 0 3 chr6 168247046 168247357 -14167885 - AluY SINE Alu -1 310 1 213 36 0 0 chr6 168247357 168247363 -14167879 + (A)n Simple_repeat Simple_repeat 23 28 0 224 382 100 6 chr6 168247632 168247802 -14167440 - L3b LINE CR1 -76 1507 1322 1973 128 7 33 chr6 168247878 168248013 -14167229 + AluSq SINE Alu 1 138 -175 2338 101 0 0 chr6 168248013 168248310 -14166932 + AluSc SINE Alu 1 297 -12 1973 128 7 33 chr6 168248310 168248478 -14166764 + AluSq SINE Alu 138 296 -17 860 216 96 47 chr6 168249153 168249570 -14165672 - MER67A LTR ERV1 0 543 6 334 218 115 0 chr6 168249567 168249645 -14165597 - MER67A LTR ERV1 -455 88 2 * 1937 128 14 0 chr6 168249973 168250254 -14164988 - AluSq SINE Alu -23 290 6 2051 134 27 0 chr6 168250952 168251251 -14163991 - AluJb SINE Alu -5 307 1 2739 42 0 0 chr6 168251284 168251595 -14163647 + AluY SINE Alu 1 311 0 24 0 0 0 chr6 168252102 168252126 -14163116 + AT_rich Low_complexity Low_complexity 1 24 0 2237 99 0 0 chr6 168252126 168252408 -14162834 - AluY SINE Alu -29 282 1 2026 94 0 0 chr6 168252450 168252735 -14162507 + AluSx SINE Alu 38 322 0 318 274 98 0 chr6 168252959 168253112 -14162130 + L1MC4 LINE L1 7781 7948 -94 28 48 0 0 chr6 168253139 168253181 -14162061 + AT_rich Low_complexity Low_complexity 1 42 0 1710 165 50 27 chr6 168253208 168253505 -14161737 - 7SLRNA srpRNA srpRNA -16 304 1 1669 174 7 17 chr6 168253713 168254006 -14161236 - AluJo SINE Alu -6 306 17 1904 114 79 7 chr6 168255095 168255375 -14159867 + AluSx SINE Alu 1 300 -12 212 261 49 92 chr6 168256374 168256516 -14158726 - L3b LINE CR1 -169 1414 1279 1816 164 20 50 chr6 168257032 168257434 -14157808 + MLT1B LTR MaLR 1 390 0 2069 92 29 4 chr6 168257587 168257868 -14157374 - AluY SINE Alu -22 289 2 526 291 129 43 chr6 168258010 168258484 -14156758 + L1MC4 LINE L1 7331 7949 -93 1298 94 0 0 chr6 168258561 168258721 -14156521 - AluSc SINE Alu -149 160 1 854 101 0 31 chr6 168259178 168259307 -14155935 - FLAM_A SINE Alu 0 142 18 238 224 105 53 chr6 168259730 168259806 -14155436 + L2 LINE L2 3134 3213 -59 217 284 30 45 chr6 168259959 168260093 -14155149 - MIR SINE MIR -46 216 85 2095 107 7 17 chr6 168260551 168260841 -14154401 - AluSx SINE Alu -25 287 1 22 70 0 0 chr6 168261146 168261189 -14154053 + AT_rich Low_complexity Low_complexity 1 43 0 1305 232 0 40 chr6 168261725 168261866 -14153376 + AluJo SINE Alu 1 125 -187 2061 136 0 0 chr6 168261866 168262152 -14153090 + AluSx SINE Alu 1 286 -26 1305 232 0 40 chr6 168262152 168262312 -14152930 + AluJo SINE Alu 125 290 -22 328 286 212 15 chr6 168262341 168262544 -14152698 - MIR SINE MIR -18 244 2 618 310 81 14 chr6 168262712 168263147 -14152095 - L1M4 LINE L1 -2204 3942 3479 262 124 12 6 chr6 168263173 168263225 -14152017 - Alu SINE Alu -11 290 255 916 203 73 7 chr6 168263229 168263507 -14151735 + L1ME1 LINE L1 5761 6161 -5 244 254 45 0 chr6 168263516 168263583 -14151659 + L1M4 LINE L1 3338 3407 -2739 456 82 0 0 chr6 168263612 168263685 -14151557 - AluSc SINE Alu 0 309 237 431 178 27 0 chr6 168263980 168264053 -14151189 - AluS SINE Alu -235 77 3 233 196 43 167 chr6 168264061 168264102 -14151140 - L1M4 LINE L1 -2688 3458 3414 2640 62 3 0 chr6 168264102 168264410 -14150832 + AluSc SINE Alu 1 309 0 233 196 43 167 chr6 168264410 168264506 -14150736 - L1M4 LINE L1 -2732 3414 3338 904 201 80 13 chr6 168264515 168264803 -14150439 - L1ME1 LINE L1 -5 6230 5821 * 6068 149 20 2 chr6 168264801 168265994 -14149248 + L1P4 LINE L1 4282 5491 -670 1629 130 71 11 chr6 168265995 168266310 -14148932 + AluSx SINE Alu 1 331 0 2244 112 3 0 chr6 168266351 168266656 -14148586 - AluSp SINE Alu -7 306 1 859 203 34 100 chr6 168266656 168266707 -14148535 - L1ME1 LINE L1 -678 5557 5504 2446 84 0 3 chr6 168266707 168267017 -14148225 - AluY SINE Alu -2 309 1 859 203 34 100 chr6 168267017 168267131 -14148111 - L1ME1 LINE L1 -731 5504 5384 1405 156 65 91 chr6 168267131 168267339 -14147903 - MER2 DNA MER2_type 0 344 147 2097 115 25 0 chr6 168267339 168267618 -14147624 + AluSx SINE Alu 1 286 -26 1405 156 65 91 chr6 168267618 168267762 -14147480 - MER2 DNA MER2_type -197 147 1 859 203 34 100 chr6 168267762 168267949 -14147293 - L1ME1 LINE L1 -851 5384 5186 2359 78 0 0 chr6 168267949 168268275 -14146967 + AluY SINE Alu 1 326 0 859 203 34 100 chr6 168268275 168268297 -14146945 - L1ME1 LINE L1 -1049 5186 5164 1302 190 22 0 chr6 168268297 168268566 -14146676 - L1MA6 LINE L1 0 6300 6026 859 203 34 100 chr6 168268566 168268664 -14146578 - L1ME1 LINE L1 -1071 5164 5127 353 48 161 0 chr6 168268689 168268751 -14146491 + LTR9B LTR ERV1 2 73 -571 805 96 17 0 chr6 168268762 168268877 -14146365 - BC200 scRNA scRNA -70 130 14 3400 115 15 17 chr6 168268885 168269407 -14145835 + LTR9B LTR ERV1 124 644 0 635 210 21 28 chr6 168269411 168269554 -14145688 - L1ME1 LINE L1 -1140 5075 4934 594 285 69 22 chr6 168269573 168269934 -14145308 - L1ME1 LINE L1 -2811 3404 3027 4427 134 49 32 chr6 168269941 168270506 -14144736 + MER4E LTR ERV1 3 586 -193 2574 40 0 3 chr6 168270506 168270804 -14144438 - AluY SINE Alu -14 297 1 4427 134 49 32 chr6 168270804 168270993 -14144249 + MER4E LTR ERV1 586 770 -9 376 274 72 52 chr6 168270994 168271100 -14144142 - L1ME1 LINE L1 -3182 3033 2931 2178 111 0 10 chr6 168271100 168271407 -14143835 + AluSq SINE Alu 1 304 -9 376 274 72 52 chr6 168271407 168271529 -14143713 - L1ME1 LINE L1 -3284 2931 2813 959 211 112 53 chr6 168271529 168271851 -14143391 + MER58B DNA MER1_type 1 341 0 376 274 72 52 chr6 168271851 168272453 -14142789 - L1ME1 LINE L1 -3402 2813 2192 1235 172 34 34 chr6 168273099 168273361 -14141881 - AluJo SINE Alu -12 300 39 180 0 0 0 chr6 168273465 168273485 -14141757 + (A)n Simple_repeat Simple_repeat 1 20 0 1983 107 10 40 chr6 168273485 168273785 -14141457 + AluSx SINE Alu 9 299 -13 4434 131 45 22 chr6 168274773 168275551 -14139691 - Tigger3b DNA MER2_type 0 1231 436 2084 156 41 38 chr6 168275551 168276101 -14139141 + MLT2A2 LTR ERVL 1 547 -7 2233 116 111 27 chr6 168276104 168276227 -14139015 - Tigger3b DNA MER2_type -2588 440 329 2484 60 0 35 chr6 168276227 168276541 -14138701 + AluY SINE Alu 1 303 -8 2233 116 111 27 chr6 168276541 168276822 -14138420 - Tigger3b DNA MER2_type -2699 329 2 292 266 117 16 chr6 168276886 168277014 -14138228 + MIR SINE MIR 14 154 -108 213 283 196 0 chr6 168277465 168277557 -14137685 - MIR SINE MIR -139 123 14 2426 65 3 0 chr6 168281722 168282015 -14133227 + AluY SINE Alu 1 294 -17 270 324 84 27 chr6 168283167 168283392 -14131850 + MIR SINE MIR 13 250 -12 3713 178 96 19 chr6 168283875 168284701 -14130541 - L1MB8 LINE L1 -5 6173 5285 224 238 16 0 chr6 168285611 168285674 -14129568 - MIR SINE MIR -69 139 76 4362 54 52 17 chr6 168286023 168286599 -14128643 + LTR14B LTR ERVK 13 608 0 2405 84 3 0 chr6 168287081 168287377 -14127865 - AluSg SINE Alu -13 297 1 359 274 48 48 chr6 168287837 168287983 -14127259 - MIR SINE MIR -74 188 43 535 123 0 0 chr6 168288184 168288257 -14126985 + tRNA-Val-GTT tRNA tRNA 1 73 -3 2234 55 0 0 chr6 168288270 168288527 -14126715 + AluSp SINE Alu 38 294 -19 22 35 0 0 chr6 168290034 168290063 -14125179 + AT_rich Low_complexity Low_complexity 1 29 0 1888 139 14 0 chr6 168290498 168290824 -14124418 + AluJb SINE Alu 1 330 0 893 220 123 56 chr6 168291129 168291470 -14123772 + Charlie7 DNA MER1_type 360 723 -1889 197 337 32 0 chr6 168292029 168292124 -14123118 + MIR SINE MIR 3 100 -162 406 209 67 29 chr6 168292323 168292428 -14122814 + MER5A DNA MER1_type 1 109 -80 736 212 7 13 chr6 168294023 168294174 -14121068 - MLT1I LTR MaLR -2 407 258 1123 57 51 51 chr6 168294196 168294280 -14120962 + MER30 DNA MER1_type 1 84 -146 212 0 36 0 chr6 168294280 168294308 -14120934 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1123 57 51 51 chr6 168294308 168294399 -14120843 + MER30 DNA MER1_type 83 176 -54 24 0 0 0 chr6 168295223 168295247 -14119995 + AT_rich Low_complexity Low_complexity 1 24 0 293 320 134 26 chr6 168295666 168295897 -14119345 - MIR SINE MIR 0 262 7 22 0 0 0 chr6 168296187 168296209 -14119033 + GC_rich Low_complexity Low_complexity 1 22 0 2483 81 0 0 chr6 168296277 168296575 -14118667 - AluSp SINE Alu -15 298 1 1498 163 208 27 chr6 168296671 168297061 -14118181 + MSTA LTR MaLR 1 401 -27 2578 70 0 13 chr6 168297067 168297382 -14117860 - AluY SINE Alu 0 311 1 9134 124 10 36 chr6 168297426 168298882 -14116360 + THE1B-int LTR MaLR 1 1412 -168 304 77 0 115 chr6 168298882 168298934 -14116308 - Alu SINE Alu -7 294 249 1240 95 0 0 chr6 168298934 168299092 -14116150 + AluSc SINE Alu 152 309 0 2127 97 51 73 chr6 168299510 168299882 -14115360 + THE1B LTR MaLR 1 364 0 192 274 32 42 chr6 168299941 168300036 -14115206 - L2 LINE L2 -33 3280 3187 1385 177 112 0 chr6 168300807 168301067 -14114175 - AluJo SINE Alu -23 289 1 755 65 0 0 chr6 168301802 168301895 -14113347 - AluSx SINE Alu -14 296 204 820 82 0 0 chr6 168301913 168302010 -14113232 - AluSx SINE Alu -166 147 51 1765 162 0 38 chr6 168302405 168302719 -14112523 - AluJb SINE Alu -8 304 3 2582 74 0 0 chr6 168303261 168303572 -14111670 + AluY SINE Alu 1 311 0 790 290 13 4 chr6 168305001 168305232 -14110010 - MIR SINE MIR -28 234 2 1989 177 3 0 chr6 168305753 168306064 -14109178 + AluJo SINE Alu 1 312 0 218 204 41 0 chr6 168306229 168306327 -14108915 + (TA)n Simple_repeat Simple_repeat 1 102 0 266 272 139 19 chr6 168306328 168306486 -14108756 - MIR SINE MIR -58 204 28 2425 83 0 3 chr6 168307330 168307630 -14107612 + AluY SINE Alu 1 299 -12 217 226 60 24 chr6 168308507 168308591 -14106651 - MIR SINE MIR -56 206 120 272 211 78 78 chr6 168309234 168309400 -14105842 - MIR SINE MIR -67 195 30 208 317 122 0 chr6 168309895 168309977 -14105265 - L2 LINE L2 -48 3224 3133 200 86 29 0 chr6 168309982 168310017 -14105225 + (CAA)n Simple_repeat Simple_repeat 2 37 0 831 218 76 55 chr6 168310356 168310645 -14104597 + MER46C DNA MER2_type 3 297 -41 2373 103 3 0 chr6 168311005 168311316 -14103926 - AluSx SINE Alu 0 312 1 22 35 0 0 chr6 168311725 168311754 -14103488 + AT_rich Low_complexity Low_complexity 1 29 0 190 377 41 0 chr6 168311824 168311970 -14103272 + L2 LINE L2 2449 2600 -714 475 281 20 0 chr6 168312003 168312156 -14103086 + L2 LINE L2 2224 2379 -935 2222 186 22 68 chr6 168312158 168312662 -14102580 + LTR42 LTR ERVL 1 481 -14 569 269 152 19 chr6 168312674 168312930 -14102312 + L2 LINE L2 2401 2690 -624 289 304 75 15 chr6 168312959 168313144 -14102098 + L2 LINE L2 2193 2392 -922 2159 89 18 61 chr6 168313144 168313470 -14101772 + AluSx SINE Alu 1 312 0 289 304 75 15 chr6 168313470 168313485 -14101757 + L2 LINE L2 2392 2405 -909 1724 219 101 26 chr6 168313615 168314109 -14101133 + MLT1H LTR MaLR 12 542 -7 327 319 69 0 chr6 168314267 168314383 -14100859 + L2 LINE L2 3146 3269 -3 349 306 27 27 chr6 168314473 168314620 -14100622 + MIR SINE MIR 86 232 -30 248 284 78 0 chr6 168314897 168314999 -14100243 - MLT1J LTR MaLR -3 508 399 274 282 160 0 chr6 168315053 168315209 -14100033 - MLT1L LTR MaLR -211 404 224 598 266 171 29 chr6 168315265 168315789 -14099453 + MLT1G1 LTR MaLR 1 555 0 2266 107 0 3 chr6 168316676 168316974 -14098268 - AluSx SINE Alu -15 297 1 995 170 0 0 chr6 168317620 168317779 -14097463 - FRAM SINE Alu -2 174 16 273 261 261 6 chr6 168318584 168318745 -14096497 + MIR SINE MIR 61 262 0 189 0 10 0 chr6 168319754 168319818 -14095424 + (A)n Simple_repeat Simple_repeat 1 20 0 1972 151 0 0 chr6 168319827 168320112 -14095130 + AluJb SINE Alu 1 285 -27 201 300 0 0 chr6 168321044 168321104 -14094138 - MIR SINE MIR -117 145 86 1578 148 0 107 chr6 168321381 168321458 -14093784 - AluJb SINE Alu -2 310 226 2539 81 0 0 chr6 168321458 168321768 -14093474 - AluSq SINE Alu -3 310 1 1578 148 0 107 chr6 168321768 168322035 -14093207 - AluJb SINE Alu -86 226 3 303 259 235 25 chr6 168322039 168322282 -14092960 - L1MC4a LINE L1 -1636 6172 5879 1484 185 10 34 chr6 168322434 168322732 -14092510 - AluJb SINE Alu -21 291 1 940 114 15 0 chr6 168323504 168323635 -14091607 + AluSg/x SINE Alu 163 295 -15 1374 96 87 157 chr6 168323854 168324186 -14091056 - AluJb SINE Alu -3 309 1 2511 74 0 3 chr6 168325742 168326053 -14089189 + AluY SINE Alu 1 310 -1 2469 75 16 0 chr6 168326172 168326478 -14088764 + AluY SINE Alu 1 311 0 679 289 97 38 chr6 168326504 168326908 -14088334 + L1MEd LINE L1 938 1316 -1260 2382 67 3 0 chr6 168326908 168327217 -14088025 + AluY SINE Alu 1 310 0 679 289 97 38 chr6 168327217 168327466 -14087776 + L1MEd LINE L1 1316 1725 -851 24 0 0 0 chr6 168327781 168327805 -14087437 + AT_rich Low_complexity Low_complexity 1 24 0 2234 106 3 6 chr6 168328158 168328469 -14086773 + AluSx SINE Alu 1 310 -2 2095 86 48 10 chr6 168328858 168329149 -14086093 - AluSg SINE Alu -8 302 1 1794 184 0 7 chr6 168329293 168329592 -14085650 + AluJo SINE Alu 1 297 -15 552 267 104 16 chr6 168330732 168331039 -14084203 + L1MEd LINE L1 1926 2259 -4137 203 175 0 0 chr6 168331805 168331845 -14083397 + T-rich Low_complexity Low_complexity 1 40 0 3456 87 11 0 chr6 168332172 168332620 -14082622 + MLT2A2 LTR ERVL 1 453 0 222 326 180 24 chr6 168335341 168335801 -14079441 + L2 LINE L2 1729 2260 -1054 694 255 159 20 chr6 168335809 168336111 -14079131 - L1MB8 LINE L1 -2 6176 5833 1641 177 0 49 chr6 168336557 168336884 -14078358 + AluJo SINE Alu 1 311 -1 1830 186 17 0 chr6 168337265 168337566 -14077676 - AluJo SINE Alu -6 306 1 28 0 0 0 chr6 168338663 168338691 -14076551 + AT_rich Low_complexity Low_complexity 1 28 0 2343 87 0 0 chr6 168339483 168339772 -14075470 + AluSc SINE Alu 1 289 -20 23 0 0 0 chr6 168340100 168340123 -14075119 + AT_rich Low_complexity Low_complexity 1 23 0 2464 92 0 9 chr6 168340156 168340471 -14074771 + AluSx SINE Alu 1 312 0 1989 135 24 0 chr6 168341125 168341414 -14073828 + AluSx SINE Alu 1 296 -16 6506 99 44 27 chr6 168341415 168343428 -14071814 + SVA Other Other 13 1386 0 283 285 196 31 chr6 168343878 168344236 -14071006 - L2 LINE L2 -351 2963 2547 653 191 9 0 chr6 168345038 168345153 -14070089 - Tigger1 DNA MER2_type -3 2415 2300 290 241 0 0 chr6 168345158 168345200 -14070042 + AluJo SINE Alu 6 47 -255 4297 76 25 7 chr6 168345200 168346212 -14069030 + MER11A LTR ERVK 1 1266 0 989 203 88 5 chr6 168346214 168346406 -14068836 + AluJo SINE Alu 44 251 -61 5432 138 37 0 chr6 168346406 168347248 -14067994 - Tigger1 DNA MER2_type -1538 880 8 1402 184 64 99 chr6 168347252 168347718 -14067524 - LTR7 LTR ERV1 0 450 1 1389 229 70 12 chr6 168347858 168348203 -14067039 - MLT1A1 LTR MaLR 0 365 1 225 0 0 0 chr6 168348616 168348641 -14066601 + (CA)n Simple_repeat Simple_repeat 2 26 0 343 304 189 60 chr6 168348686 168348903 -14066339 - MIR SINE MIR -12 250 6 4636 151 31 26 chr6 168349297 168349373 -14065869 + L1MA4 LINE L1 5082 5156 -1144 2116 118 4 0 chr6 168349373 168349653 -14065589 + AluSg SINE Alu 1 281 -29 4636 151 31 26 chr6 168349653 168350591 -14064651 + L1MA4 LINE L1 5156 6090 -210 27 49 0 0 chr6 168351981 168352022 -14063220 + AT_rich Low_complexity Low_complexity 1 41 0 183 221 49 139 chr6 168352750 168352872 -14062370 + MER5A DNA MER1_type 79 189 0 2400 211 40 20 chr6 168352902 168353297 -14061945 + Charlie1a DNA MER1_type 76 486 -2275 2487 140 66 25 chr6 168353297 168353479 -14061763 + MSTB LTR MaLR 1 174 -252 1796 91 4 0 chr6 168353479 168353711 -14061531 + AluSq SINE Alu 72 304 -9 2487 140 66 25 chr6 168353711 168353936 -14061306 + MSTB LTR MaLR 174 425 -1 2400 211 40 20 chr6 168353936 168354084 -14061158 + Charlie1a DNA MER1_type 486 630 -825 364 245 70 49 chr6 168354226 168354369 -14060873 + LTR41 LTR ERVL 13 158 -615 371 169 25 93 chr6 168354883 168354922 -14060320 + LTR41 LTR ERVL 658 698 -75 261 0 0 0 chr6 168354922 168354951 -14060291 + (TA)n Simple_repeat Simple_repeat 1 29 0 2449 88 7 0 chr6 168354953 168355261 -14059981 - AluSx SINE Alu -1 311 2 371 169 25 93 chr6 168355261 168355336 -14059906 + LTR41 LTR ERVL 699 767 -6 3429 233 78 69 chr6 168355350 168356793 -14058449 + L1MC4 LINE L1 1996 8321 -1 1427 145 128 3 chr6 168356909 168357191 -14058051 + MER33 DNA MER1_type 8 324 0 689 263 70 28 chr6 168358735 168358948 -14056294 + MIR SINE MIR 25 246 -16 839 279 100 88 chr6 168359003 168359015 -14056227 + HAL1 LINE L1 586 596 -1911 471 35 0 0 chr6 168359015 168359072 -14056170 + (CA)n Simple_repeat Simple_repeat 1 57 0 839 279 100 88 chr6 168359072 168359959 -14055283 + HAL1 LINE L1 596 1496 -1011 406 246 48 24 chr6 168359971 168360097 -14055145 - MIR SINE MIR -21 241 113 956 213 12 71 chr6 168360100 168360340 -14054902 + MER8 DNA MER2_type 13 238 -1 332 359 39 0 chr6 168360344 168360447 -14054795 - MIR SINE MIR -148 114 8 1264 238 107 72 chr6 168360472 168361219 -14054023 + HAL1 LINE L1 1552 2324 -183 2393 83 3 0 chr6 168361501 168361801 -14053441 + AluY SINE Alu 1 301 -10 381 311 23 8 chr6 168362324 168362456 -14052786 + MIR SINE MIR 53 186 -76 265 253 95 21 chr6 168362584 168362679 -14052563 + L2 LINE L2 3170 3271 -1 584 181 47 27 chr6 168363143 168363339 -14051903 - MER6 DNA MER2_type -3 862 -65 228 276 112 67 chr6 168364328 168364462 -14050780 + L2 LINE L2 3133 3272 0 24 0 0 0 chr6 168365302 168365326 -14049916 + AT_rich Low_complexity Low_complexity 1 24 0 476 303 168 55 chr6 168365422 168366082 -14049160 - L2 LINE L2 -750 2564 1830 30 0 0 0 chr6 168366088 168366118 -14049124 + AT_rich Low_complexity Low_complexity 1 30 0 2216 114 3 0 chr6 168366420 168366719 -14048523 + AluSq SINE Alu 1 300 -13 685 218 151 67 chr6 168367830 168368106 -14047136 - MER46C DNA MER2_type 0 338 32 1553 188 0 68 chr6 168368106 168368430 -14046812 + AluJb SINE Alu 1 302 -10 685 218 151 67 chr6 168368430 168368465 -14046777 - MER46C DNA MER2_type -306 32 1 421 315 41 7 chr6 168368543 168368689 -14046553 + MIR SINE MIR 58 208 -54 231 156 333 67 chr6 168368708 168368798 -14046444 + MER81 DNA DNA 1 114 0 866 143 0 0 chr6 168368855 168368974 -14046268 - FLAM_C SINE Alu -24 119 1 7364 38 10 0 chr6 168369026 168369955 -14045287 + L1PA6 LINE L1 5187 6124 -30 367 167 167 0 chr6 168370061 168370139 -14045103 + MLT1E1 LTR MaLR 1 91 -563 1791 194 19 6 chr6 168370172 168370537 -14044705 + MLT1E1 LTR MaLR 277 646 -8 1809 202 156 23 chr6 168370757 168371170 -14044072 + L1ME3 LINE L1 5516 6024 -138 2218 169 17 3 chr6 168371170 168371530 -14043712 + MLT1A1 LTR MaLR 1 365 0 1809 202 156 23 chr6 168371530 168371675 -14043567 + L1ME3 LINE L1 6024 6148 -14 1518 159 168 13 chr6 168371676 168371991 -14043251 + MLT1A1 LTR MaLR 1 364 -1 227 269 0 0 chr6 168372190 168372242 -14043000 + L2 LINE L2 3217 3268 -4 3249 198 56 40 chr6 168374095 168374900 -14040342 + MER11C LTR ERVK 254 1071 0 319 200 0 0 chr6 168375634 168375684 -14039558 + Alu SINE Alu 1 50 -252 765 156 86 8 chr6 168375684 168375812 -14039430 + AluJo/FRAM SINE Alu 158 295 -17 1945 144 16 10 chr6 168376527 168376832 -14038410 + AluJb SINE Alu 4 310 -2 601 73 21 10 chr6 168376837 168376933 -14038309 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 2934 227 105 48 chr6 168377415 168378583 -14036659 + L1MC4a LINE L1 5039 5399 -747 1463 180 37 59 chr6 168378610 168378661 -14036581 - MLT1A1 LTR MaLR -16 410 359 2207 101 7 3 chr6 168378661 168378959 -14036283 - AluSg SINE Alu -11 299 1 1463 180 37 59 chr6 168378959 168379268 -14035974 - MLT1A1 LTR MaLR -67 359 1 1469 146 45 0 chr6 168379331 168379578 -14035664 - Tigger2 DNA MER2_type 0 2718 2461 4345 142 25 15 chr6 168379636 168380348 -14034894 - Tigger2 DNA MER2_type -1969 749 31 288 248 8 68 chr6 168380396 168380428 -14034814 + L1MC4a LINE L1 6344 6376 -1432 1948 194 21 16 chr6 168380428 168380800 -14034442 - MLT1A2 LTR MaLR 0 374 1 288 248 8 68 chr6 168380800 168380884 -14034358 + L1MC4a LINE L1 6376 6453 -1355 272 295 133 0 chr6 168380883 168380988 -14034254 + L1MC4 LINE L1 6510 6628 -1414 * 3850 29 0 0 chr6 168381089 168381507 -14033735 + SVA Other Other 969 1386 0 3361 176 68 34 chr6 168381518 168381762 -14033480 + Charlie1 DNA MER1_type 1925 2159 -602 1829 112 15 4 chr6 168381762 168382029 -14033213 + AluSx SINE Alu 36 305 -7 3361 176 68 34 chr6 168382029 168382470 -14032772 + Charlie1 DNA MER1_type 2159 2645 -116 1804 169 0 10 chr6 168382470 168382772 -14032470 - AluJo SINE Alu -13 299 1 3361 176 68 34 chr6 168382772 168382892 -14032350 + Charlie1 DNA MER1_type 2645 2759 -2 1705 164 13 20 chr6 168382931 168383235 -14032007 - AluJb SINE Alu -10 302 1 2777 139 22 72 chr6 168383695 168383787 -14031455 + L1MB3 LINE L1 5658 5753 -430 1919 152 3 20 chr6 168383787 168384089 -14031153 - AluJo SINE Alu -14 298 2 2777 139 22 72 chr6 168384089 168384143 -14031099 + L1MB3 LINE L1 5753 5808 -375 402 21 0 0 chr6 168384143 168384190 -14031052 + (CA)n Simple_repeat Simple_repeat 2 48 0 2777 139 22 72 chr6 168384190 168384541 -14030701 + L1MB3 LINE L1 5808 6128 -55 1862 178 0 0 chr6 168384541 168384834 -14030408 + AluJo SINE Alu 1 293 -19 2777 139 22 72 chr6 168384834 168384888 -14030354 + L1MB3 LINE L1 6128 6183 0 22 0 0 0 chr6 168385393 168385415 -14029827 + AT_rich Low_complexity Low_complexity 1 22 0 242 322 22 0 chr6 168385695 168385785 -14029457 + L1ME LINE L1 5558 5649 -513 269 93 278 0 chr6 168385889 168385943 -14029299 + MER11A LTR ERVK 933 1001 -265 2024 66 22 62 chr6 168385943 168386263 -14028979 + MER11A LTR ERVK 937 1243 -23 35261 77 26 18 chr6 168386263 168387301 -14027941 + HERVK11 LTR ERVK 2488 3516 -4437 186 323 62 0 chr6 168387301 168387366 -14027876 + MIR SINE MIR 64 132 -76 35261 77 26 18 chr6 168387366 168390944 -14024298 + HERVK11 LTR ERVK 3516 7206 -747 782 53 0 0 chr6 168390945 168391039 -14024203 + HERVK11 LTR ERVK 7860 7953 0 3954 76 61 30 chr6 168391039 168391781 -14023461 + MER11A LTR ERVK 1 798 -438 4674 165 43 68 chr6 168391796 168392895 -14022347 + MER11C LTR ERVK 1 1071 0 2288 56 18 59 chr6 168392895 168393233 -14022009 + MER11A LTR ERVK 943 1266 0 335 106 0 0 chr6 168393234 168393281 -14021961 + FRAM SINE Alu 53 99 -67 292 214 0 22 chr6 168393297 168393386 -14021856 + GA-rich Low_complexity Low_complexity 3 89 0 245 239 11 34 chr6 168393396 168393484 -14021758 + L1ME3A LINE L1 5895 5980 -182 312 245 69 90 chr6 168393515 168393601 -14021641 + L1ME3A LINE L1 5963 6049 -121 2164 120 0 7 chr6 168393601 168393900 -14021342 - AluY SINE Alu -14 297 1 312 245 69 90 chr6 168393900 168394001 -14021241 + L1ME3A LINE L1 6049 6146 -24 1624 160 72 7 chr6 168394497 168394790 -14020452 + AluJb SINE Alu 1 312 0 254 164 18 0 chr6 168394798 168394853 -14020389 + GA-rich Low_complexity Low_complexity 3 58 0 2304 107 3 0 chr6 168395118 168395426 -14019816 - AluSx SINE Alu -3 309 1 23 0 0 0 chr6 168395970 168395993 -14019249 + AT_rich Low_complexity Low_complexity 1 23 0 632 289 35 14 chr6 168396637 168396924 -14018318 + L1ME4a LINE L1 5568 5860 -261 659 188 18 0 chr6 168397156 168397268 -14017974 - MER81 DNA DNA 0 114 1 957 277 119 26 chr6 168397384 168398393 -14016849 + L1MEd LINE L1 605 1743 -4567 590 268 51 47 chr6 168398438 168398673 -14016569 - MIR SINE MIR -21 241 6 1311 142 84 5 chr6 168398971 168399329 -14015913 + L1M1 LINE L1 5119 5504 -743 1310 164 35 4 chr6 168399330 168399562 -14015680 + AluJo SINE Alu 58 296 -16 1759 188 0 0 chr6 168399629 168399939 -14015303 + AluJo SINE Alu 3 312 0 855 279 71 21 chr6 168399955 168400576 -14014666 + L1MEd LINE L1 2978 3629 -2500 292 263 77 83 chr6 168400620 168400708 -14014534 + L1MEd LINE L1 3834 3921 -2208 2588 44 0 0 chr6 168400708 168401001 -14014241 + AluY SINE Alu 1 293 -18 292 263 77 83 chr6 168401001 168401262 -14013980 + L1MEd LINE L1 3921 4181 -1948 355 247 78 65 chr6 168401314 168401468 -14013774 - MIR SINE MIR -56 206 51 229 352 96 8 chr6 168402410 168402535 -14012707 + L2 LINE L2 3136 3271 -1 189 0 0 0 chr6 168403768 168403789 -14011453 + (CAGGG)n Simple_repeat Simple_repeat 1 21 0 261 183 100 0 chr6 168404601 168404661 -14010581 - MIR SINE MIR -83 179 114 309 146 18 0 chr6 168404662 168404724 -14010518 + MIR SINE MIR 88 151 -57 183 388 0 0 chr6 168404868 168404948 -14010294 + L2 LINE L2 3193 3272 0 578 295 98 26 chr6 168404979 168405213 -14010029 - L1MEd LINE L1 -5371 748 498 311 263 58 22 chr6 168405376 168405513 -14009729 - L1MEd LINE L1 -5950 169 28 2220 99 20 10 chr6 168406346 168406648 -14008594 - AluSx SINE Alu -7 305 1 180 0 0 0 chr6 168408047 168408067 -14007175 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1801 55 5 5 chr6 168408076 168408293 -14006949 + AluSq SINE Alu 83 299 -14 30 0 0 0 chr6 168408557 168408587 -14006655 + AT_rich Low_complexity Low_complexity 1 30 0 208 169 85 68 chr6 168408621 168408680 -14006562 - L2 LINE L2 0 3272 3213 2541 48 7 16 chr6 168410266 168410576 -14004666 + AluY SINE Alu 1 307 -4 181 269 0 0 chr6 168410699 168410751 -14004491 + L2 LINE L2 3256 3307 -6 2015 153 0 6 chr6 168412267 168412581 -14002661 + AluJb SINE Alu 1 312 0 1320 143 61 17 chr6 168412985 168413215 -14002027 + AluJo SINE Alu 73 312 0 2186 120 0 3 chr6 168413238 168413538 -14001704 + AluSx SINE Alu 1 299 -13 205 309 0 0 chr6 168414491 168414546 -14000696 - L2 LINE L2 -84 3229 3175 415 293 96 42 chr6 168414642 168414712 -14000530 - L2 LINE L2 -510 2804 2739 2551 50 0 3 chr6 168414712 168415013 -14000229 - AluY SINE Alu -11 300 1 415 293 96 42 chr6 168415013 168415181 -14000061 - L2 LINE L2 -575 2739 2553 2164 113 0 0 chr6 168415220 168415530 -13999712 - AluSg SINE Alu 0 310 1 690 274 34 0 chr6 168415544 168415723 -13999519 + MIR SINE MIR 78 262 0 320 259 9 80 chr6 168415732 168415844 -13999398 + MIR SINE MIR 157 260 -2 488 329 76 17 chr6 168415865 168416275 -13998967 - L2 LINE L2 -890 2424 1991 512 292 26 10 chr6 168416751 168416946 -13998296 + MIR SINE MIR 8 205 -57 208 339 73 9 chr6 168417327 168417436 -13997806 + L2 LINE L2 3101 3216 -56 1974 139 14 0 chr6 168417778 168418072 -13997170 + AluJo SINE Alu 1 298 -14 2350 103 0 0 chr6 168418338 168418640 -13996602 - AluSx SINE Alu -10 302 1 266 207 92 23 chr6 168419705 168419792 -13995450 + MIR SINE MIR 167 259 -3 278 315 71 8 chr6 168420123 168420250 -13994992 - MIR SINE MIR -122 140 6 695 139 0 0 chr6 168420834 168420935 -13994307 + MLT1A1 LTR MaLR 1 101 -264 868 167 7 0 chr6 168420938 168421076 -13994166 + MLT1A1 LTR MaLR 227 365 0 2312 111 0 9 chr6 168421169 168421507 -13993735 + AluSp SINE Alu 1 335 0 2312 124 19 6 chr6 168422298 168422660 -13992582 + L1MB3 LINE L1 5756 6122 -61 921 184 89 0 chr6 168422661 168422851 -13992391 + MER2 DNA MER2_type 3 209 -136 251 131 98 0 chr6 168422915 168422952 -13992290 + L1MB4 LINE L1 6114 6146 -34 1873 152 10 0 chr6 168422952 168423241 -13992001 + AluJb SINE Alu 1 292 -20 251 131 98 0 chr6 168423241 168423264 -13991978 + L1MB4 LINE L1 6146 6180 0 2182 93 7 13 chr6 168423808 168424108 -13991134 - AluSc SINE Alu -11 298 1 24 0 0 0 chr6 168424197 168424221 -13991021 + AT_rich Low_complexity Low_complexity 1 24 0 234 315 87 8 chr6 168424230 168424357 -13990885 + MIR3 SINE MIR 3 139 -69 1017 169 0 37 chr6 168425403 168425421 -13989821 - AluJb SINE Alu -15 297 280 2352 101 0 0 chr6 168425421 168425727 -13989515 - AluSx SINE Alu -6 306 1 213 39 0 0 chr6 168425727 168425753 -13989489 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1017 169 0 37 chr6 168425753 168425922 -13989320 - AluJb SINE Alu -30 282 116 723 281 88 57 chr6 168427386 168427862 -13987380 + MLT1J LTR MaLR 4 494 -17 797 223 66 5 chr6 168428173 168428370 -13986872 - MER3 DNA MER1_type 0 209 1 2314 93 10 6 chr6 168428389 168428701 -13986541 + AluSq SINE Alu 1 313 0 1858 55 0 0 chr6 168428916 168429133 -13986109 - AluY SINE Alu -14 297 81 1639 216 131 83 chr6 168429208 168429897 -13985345 + MER21B LTR ERV1 17 738 -125 2020 112 0 0 chr6 168430299 168430559 -13984683 - AluSx SINE Alu -51 261 2 225 281 44 52 chr6 168431274 168431335 -13983907 + LTR67 LTR ERVL 422 555 -2 294 230 54 0 chr6 168431335 168431409 -13983833 + MLT1K LTR MaLR 509 586 -2 514 168 20 10 chr6 168432002 168432103 -13983139 + L1MB3 LINE L1 6075 6176 -7 189 175 0 0 chr6 168433186 168433226 -13982016 + (CATA)n Simple_repeat Simple_repeat 3 42 0 873 265 139 45 chr6 168433682 168434241 -13981001 - MLT1L LTR MaLR 0 615 4 2212 127 0 6 chr6 168434404 168434718 -13980524 - AluSx SINE Alu 0 312 1 2174 121 0 0 chr6 168435065 168435347 -13979895 + AluSx SINE Alu 1 282 -30 2202 106 0 13 chr6 168435453 168435754 -13979488 - AluSx SINE Alu -14 298 2 556 175 19 0 chr6 168436731 168436834 -13978408 + L1MD3 LINE L1 7785 7889 -106 2212 110 0 3 chr6 168436834 168437133 -13978109 + AluSc SINE Alu 1 298 -11 2396 101 0 0 chr6 168439053 168439360 -13975882 + AluSc SINE Alu 2 308 -1 813 206 7 0 chr6 168439382 168439528 -13975714 + FRAM SINE Alu 10 156 -20 1375 149 130 19 chr6 168440398 168440667 -13974575 - AluJo SINE Alu 0 302 4 306 73 0 0 chr6 168440723 168440764 -13974478 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1572 166 10 35 chr6 168440766 168440940 -13974302 - AluJb SINE Alu -30 282 116 2446 65 3 3 chr6 168440940 168441234 -13974008 + AluY SINE Alu 2 295 -16 1572 166 10 35 chr6 168441234 168441348 -13973894 - AluJb SINE Alu -196 116 1 2360 56 42 10 chr6 168443000 168443288 -13971954 - AluY SINE Alu -14 297 1 360 0 0 0 chr6 168443444 168443484 -13971758 + (CA)n Simple_repeat Simple_repeat 2 41 0 329 198 21 52 chr6 168443862 168443958 -13971284 - L1ME LINE L1 -427 5694 5602 1844 155 7 23 chr6 168444213 168444516 -13970726 + AluJb SINE Alu 1 298 -14 409 104 75 15 chr6 168444558 168444625 -13970617 - MLT1A2 LTR MaLR 0 374 304 35 0 0 0 chr6 168444645 168444680 -13970562 + AT_rich Low_complexity Low_complexity 1 35 0 851 127 0 0 chr6 168444680 168444798 -13970444 - FLAM_C SINE Alu -15 118 1 1491 214 9 19 chr6 168444798 168445121 -13970121 - MLT1A2 LTR MaLR -54 320 1 225 255 94 38 chr6 168445122 168445228 -13970014 - L1P4 LINE L1 -717 5448 5337 * 2624 214 98 96 chr6 168445206 168445620 -13969622 + L1MC5 LINE L1 6742 7154 -807 360 0 0 0 chr6 168445620 168445660 -13969582 + (CA)n Simple_repeat Simple_repeat 2 41 0 2624 214 98 96 chr6 168445660 168446388 -13968854 + L1MC5 LINE L1 7154 7886 -75 2095 75 0 15 chr6 168446421 168446689 -13968553 + AluSg SINE Alu 1 264 -46 2298 93 0 0 chr6 168447615 168447908 -13967334 + AluSg SINE Alu 1 290 -20 4384 86 34 78 chr6 168447911 168448971 -13966271 + SVA Other Other 183 868 -520 1729 100 13 74 chr6 168448988 168449450 -13965792 + SVA Other Other 433 866 -520 624 32 7 162 chr6 168449467 168450084 -13965158 + SVA Other Other 665 794 -592 6788 66 12 49 chr6 168450097 168451088 -13964154 + SVA Other Other 433 1386 0 2436 88 10 0 chr6 168452399 168452706 -13962536 + AluSg SINE Alu 1 310 0 302 230 126 0 chr6 168453071 168453206 -13962036 - L1M4 LINE L1 -798 5348 5197 201 122 49 0 chr6 168453615 168453656 -13961586 + (TTTAA)n Simple_repeat Simple_repeat 5 47 0 391 125 0 0 chr6 168453796 168453860 -13961382 + L1MB3 LINE L1 5767 5830 -353 879 136 0 0 chr6 168453860 168453985 -13961257 + AluJo SINE Alu 1 125 -187 2049 139 31 14 chr6 168453995 168454312 -13960930 + L1MB3 LINE L1 5815 6140 -43 2066 135 0 35 chr6 168454312 168454623 -13960619 - AluSx SINE Alu -12 300 1 2049 139 31 14 chr6 168454623 168454665 -13960577 + L1MB3 LINE L1 6140 6180 -3 321 291 134 48 chr6 168457035 168457571 -13957671 + L1M2 LINE L1 531 1112 -5737 1045 171 0 26 chr6 168458269 168458462 -13956780 - AluJo SINE Alu -124 188 1 640 196 82 6 chr6 168458508 168458666 -13956576 + AluJo SINE Alu 126 295 -17 336 100 0 0 chr6 168458743 168458793 -13956449 + AluSc SINE Alu 156 205 -94 907 84 16 76 chr6 168458810 168459598 -13955644 - SVA Other Other -520 866 665 23 33 0 0 chr6 168459679 168459709 -13955533 + GC_rich Low_complexity Low_complexity 1 30 0 1045 171 0 26 chr6 168460711 168460904 -13954338 - AluJo SINE Alu -124 188 1 640 196 82 6 chr6 168460950 168461108 -13954134 + AluJo SINE Alu 126 295 -17 943 107 0 8 chr6 168461185 168461316 -13953926 + AluSg/x SINE Alu 158 287 -25 2214 94 7 29 chr6 168461617 168461924 -13953318 - AluSx SINE Alu -12 300 1 297 329 145 5 chr6 168462364 168462571 -13952671 + MIR SINE MIR 13 248 -14 2108 131 0 0 chr6 168462584 168462875 -13952367 + AluSx SINE Alu 1 291 -21 2483 68 0 3 chr6 168462883 168463178 -13952064 + AluSp SINE Alu 1 294 -19 1412 137 14 0 chr6 168463204 168463416 -13951826 + AluSg/x SINE Alu 83 297 -13 889 164 7 7 chr6 168463435 168463587 -13951655 + FRAM SINE Alu 8 159 -17 210 277 0 0 chr6 168463591 168463638 -13951604 - MIR SINE MIR 0 262 216 1568 173 62 7 chr6 168463816 168464088 -13951154 - AluJo SINE Alu -21 291 5 516 276 20 95 chr6 168465044 168465338 -13949904 + L3 LINE CR1 963 1234 -343 2476 81 3 0 chr6 168465392 168465700 -13949542 - AluSc SINE Alu 0 309 1 1901 154 3 47 chr6 168466276 168466479 -13948763 - AluJb SINE Alu -7 305 120 1806 64 0 9 chr6 168466479 168466698 -13948544 + AluY SINE Alu 82 298 -13 1901 154 3 47 chr6 168466698 168466813 -13948429 - AluJb SINE Alu -192 120 1 2262 125 3 0 chr6 168466863 168467174 -13948068 + AluSx SINE Alu 1 312 0 2327 104 0 13 chr6 168467296 168467603 -13947639 + AluSx SINE Alu 1 303 -9 2053 109 22 45 chr6 168468396 168468709 -13946533 + AluSq SINE Alu 1 306 -7 1634 210 0 0 chr6 168468710 168469001 -13946241 - AluJo SINE Alu -21 291 1 740 179 8 15 chr6 168469138 168469272 -13945970 - FLAM_C SINE Alu 0 133 1 392 252 113 83 chr6 168469458 168469603 -13945639 + MLT1L LTR MaLR 3 161 -454 786 214 27 16 chr6 168469603 168469790 -13945452 + MER5A DNA MER1_type 1 189 0 392 252 113 83 chr6 168469790 168469910 -13945332 + MLT1L LTR MaLR 161 276 -339 2303 97 3 28 chr6 168469914 168470234 -13945008 - AluSx SINE Alu 0 312 1 1005 165 109 25 chr6 168470269 168470554 -13944688 + Charlie1b DNA MER1_type 48 356 -167 25 65 0 0 chr6 168470558 168470604 -13944638 + AT_rich Low_complexity Low_complexity 1 46 0 326 159 51 22 chr6 168470604 168470742 -13944500 + Charlie1b DNA MER1_type 303 444 -79 223 170 0 0 chr6 168470746 168470793 -13944449 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 262 319 112 12 chr6 168470870 168471111 -13944131 + MLT1L LTR MaLR 346 610 -5 2300 102 7 0 chr6 168471140 168471435 -13943807 - AluSx SINE Alu -15 297 1 22 35 0 0 chr6 168471907 168471936 -13943306 + AT_rich Low_complexity Low_complexity 1 29 0 425 203 0 0 chr6 168471936 168472015 -13943227 + AluJ/FLAM SINE Alu 1 79 -233 222 94 94 0 chr6 168472015 168472068 -13943174 + (TA)n Simple_repeat Simple_repeat 1 58 0 1270 154 4 47 chr6 168472069 168472302 -13942940 + AluJb SINE Alu 90 312 0 229 277 117 36 chr6 168472533 168472670 -13942572 + MLT1I LTR MaLR 65 212 -197 204 235 0 0 chr6 168472827 168472878 -13942364 + A-rich Low_complexity Low_complexity 1 51 0 200 246 14 0 chr6 168473072 168473141 -13942101 + (TGAA)n Simple_repeat Simple_repeat 4 73 0 1221 190 47 109 chr6 168473160 168473494 -13941748 - MSTD LTR MaLR 0 396 43 2443 86 0 3 chr6 168473494 168473797 -13941445 + AluY SINE Alu 1 302 -9 1221 190 47 109 chr6 168473797 168473833 -13941409 - MSTD LTR MaLR -353 43 52 2265 108 3 3 chr6 168473833 168474128 -13941114 - AluSg SINE Alu -15 295 1 1221 190 47 109 chr6 168474128 168474178 -13941064 - MSTD LTR MaLR -343 53 1 212 351 46 53 chr6 168474275 168474406 -13940836 + L3 LINE CR1 1402 1531 -46 2548 62 0 10 chr6 168474746 168475054 -13940188 + AluY SINE Alu 1 305 -6 1147 80 7 13 chr6 168475054 168475247 -13939995 + AluSp SINE Alu 135 326 0 983 111 35 0 chr6 168475247 168475427 -13939815 + AluSg/x SINE Alu 133 317 0 450 0 0 0 chr6 168475461 168475511 -13939731 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2670 55 0 0 chr6 168475661 168475968 -13939274 - AluY SINE Alu -4 307 1 25 0 0 0 chr6 168476142 168476167 -13939075 + AT_rich Low_complexity Low_complexity 1 25 0 2282 87 0 78 chr6 168476391 168476726 -13938516 + AluSc SINE Alu 1 309 0 2289 76 10 17 chr6 168476793 168477095 -13938147 - AluSp SINE Alu -13 300 1 581 0 14 0 chr6 168477220 168477289 -13937953 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 306 0 0 0 chr6 168477399 168477433 -13937809 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 719 156 109 0 chr6 168477436 168477564 -13937678 - FAM SINE Alu -28 157 16 1065 224 24 31 chr6 168477819 168478073 -13937169 - MIR SINE MIR -10 252 1 917 191 37 80 chr6 168478181 168478474 -13936768 - L1ME2 LINE L1 -9 6155 5876 2534 64 7 0 chr6 168478474 168478770 -13936472 - AluY SINE Alu -13 298 1 917 191 37 80 chr6 168478770 168478801 -13936441 - L1ME2 LINE L1 -288 5876 5845 1193 109 0 0 chr6 168478871 168479027 -13936215 - AluSx SINE Alu -14 296 141 677 93 0 0 chr6 168479027 168479113 -13936129 - AluSx SINE Alu -226 87 2 1677 211 52 80 chr6 168479114 168479196 -13936046 - L1ME2 LINE L1 -411 5753 5670 1859 173 13 3 chr6 168479196 168479502 -13935740 - AluJb SINE Alu -3 309 1 1677 211 52 80 chr6 168479502 168479594 -13935648 - L1ME2 LINE L1 -494 5670 5577 2442 94 0 0 chr6 168479594 168479901 -13935341 + AluSg SINE Alu 1 307 -3 1677 211 52 80 chr6 168479901 168480394 -13934848 - L1ME2 LINE L1 -587 5577 5108 324 226 21 11 chr6 168480479 168480572 -13934670 - L1ME2 LINE L1 -1233 4913 4820 2061 130 14 0 chr6 168480625 168480917 -13934325 + AluSx SINE Alu 1 296 -16 2485 76 0 10 chr6 168480922 168481236 -13934006 + AluY SINE Alu 1 311 0 2014 104 42 14 chr6 168481245 168481534 -13933708 + AluSp SINE Alu 1 297 -16 5391 108 234 113 chr6 168481596 168483111 -13932131 + pTR5 LTR ERV1 741 2438 0 1849 131 19 0 chr6 168483146 168483414 -13931828 - AluSx SINE Alu -13 299 27 308 188 0 14 chr6 168483414 168483483 -13931759 - L1M LINE L1 -761 5417 5350 573 212 51 8 chr6 168483526 168483644 -13931598 + MLT1A2 LTR MaLR 189 311 -63 2042 115 11 17 chr6 168483645 168483932 -13931310 - AluSg SINE Alu -24 286 2 548 306 105 61 chr6 168484071 168484551 -13930691 + L2 LINE L2 2709 3229 -43 704 284 71 21 chr6 168484578 168484916 -13930326 + L1ME4a LINE L1 5500 5854 -267 2147 106 0 3 chr6 168485082 168485366 -13929876 + AluSx SINE Alu 1 283 -29 474 18 0 0 chr6 168485373 168485428 -13929814 + (GAAAA)n Simple_repeat Simple_repeat 4 58 0 234 244 47 12 chr6 168486282 168486368 -13928874 + L1ME4a LINE L1 5971 6059 -62 253 271 97 103 chr6 168486604 168486759 -13928483 + MER91A DNA MER1_type 35 188 -8 2193 109 0 0 chr6 168488298 168488614 -13926628 - AluSx SINE Alu 0 316 1 2268 119 3 3 chr6 168489128 168489439 -13925803 - AluSx SINE Alu -1 311 1 499 252 174 7 chr6 168489504 168489659 -13925583 + MER5A DNA MER1_type 9 189 0 2293 62 49 7 chr6 168489885 168490173 -13925069 - AluSg SINE Alu -9 301 2 414 0 0 0 chr6 168490538 168490584 -13924658 + (CA)n Simple_repeat Simple_repeat 1 46 0 584 273 0 14 chr6 168490930 168491073 -13924169 + MER5B DNA MER1_type 1 141 -37 2443 80 7 0 chr6 168491207 168491507 -13923735 - AluY SINE Alu -9 302 1 2439 59 7 0 chr6 168491570 168491858 -13923384 + AluY SINE Alu 1 290 -21 1715 140 19 52 chr6 168491858 168492019 -13923223 - AluJb SINE Alu -23 289 139 1889 149 30 0 chr6 168492019 168492314 -13922928 - AluSx SINE Alu -8 304 1 1715 140 19 52 chr6 168492314 168492449 -13922793 - AluJb SINE Alu -173 139 1 309 274 94 0 chr6 168492453 168492570 -13922672 + L1ME4a LINE L1 5988 6115 -6 439 223 0 58 chr6 168492608 168492747 -13922495 - L1PB4 LINE L1 0 6156 6026 1731 123 105 7 chr6 168493244 168493521 -13921721 + AluSx SINE Alu 1 304 -8 3808 104 75 7 chr6 168493908 168494524 -13920718 - HSMAR2 DNA Mariner -1 1301 644 4055 114 34 3 chr6 168494846 168495485 -13919757 - HSMAR2 DNA Mariner -643 659 1 278 298 126 84 chr6 168495485 168495643 -13919599 - MIR SINE MIR -62 200 31 2339 85 0 19 chr6 168495643 168495950 -13919292 - AluY SINE Alu -10 301 1 278 298 126 84 chr6 168495950 168495982 -13919260 - MIR SINE MIR -231 31 2 639 172 0 0 chr6 168496655 168496754 -13918488 - FRAM SINE Alu -30 146 48 22 0 0 0 chr6 168496786 168496808 -13918434 + AT_rich Low_complexity Low_complexity 1 22 0 3236 140 31 7 chr6 168497172 168497715 -13917527 + LTR6A LTR ERV1 9 564 0 2479 64 17 0 chr6 168497940 168498237 -13917005 - AluY SINE Alu -9 302 1 32 0 0 0 chr6 168499563 168499595 -13915647 + AT_rich Low_complexity Low_complexity 1 32 0 1133 239 38 35 chr6 168499792 168500219 -13915023 + L1MC/D LINE L1 4665 5092 -1054 733 221 8 0 chr6 168500227 168500358 -13914884 - AluJo SINE Alu -178 134 3 1294 218 66 37 chr6 168500364 168500852 -13914390 + L1MC/D LINE L1 5100 5608 -634 8104 54 16 3 chr6 168500954 168502055 -13913187 - L1P LINE L1 -2615 3531 2416 13843 45 2 13 chr6 168502155 168503873 -13911369 - L1P LINE L1 -743 5403 3704 227 342 43 8 chr6 168504049 168504166 -13911076 + MIR SINE MIR 33 153 -109 1165 147 132 0 chr6 168504217 168504414 -13910828 + LTR35 LTR ERV1 64 286 -332 6269 169 28 44 chr6 168504416 168505668 -13909574 + L1P LINE L1 11 1242 -4904 1040 224 24 31 chr6 168505969 168506223 -13909019 - MIR SINE MIR -10 252 1 1033 191 37 80 chr6 168506331 168506624 -13908618 - L1ME2 LINE L1 -9 6155 5876 2500 64 7 0 chr6 168506624 168506920 -13908322 - AluY SINE Alu -13 298 1 1033 191 37 80 chr6 168506920 168506951 -13908291 - L1ME2 LINE L1 -288 5876 5845 1169 109 0 0 chr6 168507021 168507177 -13908065 - AluSx SINE Alu -14 296 141 692 93 0 0 chr6 168507177 168507263 -13907979 - AluSx SINE Alu -225 87 2 812 200 11 23 chr6 168507264 168507346 -13907896 - L1ME2 LINE L1 -411 5753 5672 1821 157 13 16 chr6 168507346 168507652 -13907590 - AluJb SINE Alu -7 305 1 812 200 11 23 chr6 168507652 168507744 -13907498 - L1ME2 LINE L1 -492 5672 5581 * 1661 192 41 6 chr6 168507731 168507744 -13907498 + L1 LINE L1 3949 3960 -2186 2251 105 7 0 chr6 168507744 168508050 -13907192 + AluY SINE Alu 1 308 -3 1661 192 41 6 chr6 168508050 168508374 -13906868 + L1 LINE L1 3960 4298 -1848 1972 140 13 7 chr6 168508814 168509122 -13906120 - AluSg SINE Alu 0 310 1 6637 62 14 52 chr6 168510431 168511422 -13903820 - SVA Other Other 0 1386 433 771 113 6 51 chr6 168511547 168511724 -13903518 - SVA Other Other -527 859 691 4717 127 42 84 chr6 168512594 168512798 -13902444 + MER4D LTR ERV1 1 212 -660 2075 108 14 0 chr6 168512798 168513095 -13902147 + AluY SINE Alu 1 301 -10 4717 127 42 84 chr6 168513095 168513366 -13901876 + MER4D LTR ERV1 212 493 -379 2151 125 0 3 chr6 168513366 168513679 -13901563 + AluSq SINE Alu 1 312 -1 4717 127 42 84 chr6 168513679 168514113 -13901129 + MER4D LTR ERV1 493 872 0 307 295 9 0 chr6 168514444 168514549 -13900693 + MER113 DNA MER1_type? 1 106 -415 1546 181 58 7 chr6 168514644 168514936 -13900306 - AluJb SINE Alu -5 307 1 1988 144 7 3 chr6 168515102 168515401 -13899841 - AluJb SINE Alu -11 301 2 24 0 0 0 chr6 168515490 168515514 -13899728 + AT_rich Low_complexity Low_complexity 1 24 0 185 298 18 0 chr6 168516078 168516135 -13899107 + L2 LINE L2 3252 3309 -4 2590 54 0 0 chr6 168517046 168517344 -13897898 + AluY SINE Alu 1 298 -13 472 258 172 27 chr6 168517610 168517796 -13897446 + MIR SINE MIR 32 244 -18 1306 201 89 78 chr6 168518247 168518626 -13896616 - L2 LINE L2 -572 2742 2356 800 176 8 0 chr6 168518626 168518757 -13896485 + FLAM_C SINE Alu 1 132 -1 1306 201 89 78 chr6 168518757 168518825 -13896417 - L2 LINE L2 -958 2356 2290 923 221 112 31 chr6 168518825 168519119 -13896123 - L2 LINE L2 -1250 2064 1747 1956 259 66 46 chr6 168519122 168519861 -13895381 - L2 LINE L2 -2308 1006 253 305 222 139 28 chr6 168519963 168520017 -13895225 + L1MEc LINE L1 2027 2074 -4322 1963 131 3 10 chr6 168520017 168520322 -13894920 + AluSx SINE Alu 1 303 -9 305 222 139 28 chr6 168520322 168520375 -13894867 + L1MEc LINE L1 2074 2146 -4250 1621 183 63 112 chr6 168520375 168520570 -13894672 + L1MDa LINE L1 1454 1657 -4883 224 0 65 0 chr6 168520570 168520601 -13894641 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1621 183 63 112 chr6 168520601 168520942 -13894300 + L1MDa LINE L1 1657 1964 -4576 2048 133 0 0 chr6 168520945 168521266 -13893976 - AluSq SINE Alu 0 322 2 565 175 19 0 chr6 168522243 168522346 -13892896 + L1MD3 LINE L1 7785 7889 -106 2150 114 0 3 chr6 168522346 168522645 -13892597 + AluSc SINE Alu 1 298 -11 2379 101 0 0 chr6 168524565 168524872 -13890370 + AluSc SINE Alu 2 308 -1 855 247 6 0 chr6 168524882 168525040 -13890202 + AluJb SINE Alu 134 292 -20 1479 149 130 19 chr6 168525910 168526179 -13889063 - AluJo SINE Alu 0 302 4 306 73 0 0 chr6 168526235 168526276 -13888966 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 975 161 18 6 chr6 168526278 168526446 -13888796 - AluJb SINE Alu -30 282 113 21487 80 12 10 chr6 168526751 168529799 -13885443 + L1PA7 LINE L1 2497 5533 -621 2029 64 103 32 chr6 168529799 168530081 -13885161 - AluY SINE Alu -9 302 1 21487 80 12 10 chr6 168530081 168530694 -13884548 + L1PA7 LINE L1 5533 6143 -11 1300 221 33 11 chr6 168530694 168530970 -13884272 + LTR35 LTR ERV1 337 618 0 3858 100 0 17 chr6 168531142 168531662 -13883580 + MER9 LTR ERVK 1 511 0 2160 119 7 0 chr6 168531752 168532045 -13883197 + AluSg SINE Alu 1 295 -15 580 295 80 18 chr6 168532082 168532306 -13882936 + MIR SINE MIR 1 238 -24 2258 115 0 0 chr6 168532499 168532794 -13882448 - AluSx SINE Alu -16 296 2 216 0 0 0 chr6 168533913 168533937 -13881305 + (CA)n Simple_repeat Simple_repeat 1 24 0 1811 189 75 49 chr6 168534817 168535307 -13879935 + MER41B LTR ERV1 99 476 -10 530 206 11 0 chr6 168535858 168535950 -13879292 - MER5A DNA MER1_type -83 106 14 2016 99 60 18 chr6 168536350 168536634 -13878608 + AluSc SINE Alu 1 296 -13 459 249 213 62 chr6 168537098 168537503 -13877739 + L2 LINE L2 1636 2117 -1197 808 221 171 18 chr6 168537503 168537784 -13877458 + MER33 DNA MER1_type 1 324 0 459 249 213 62 chr6 168537784 168537828 -13877414 + L2 LINE L2 2117 2153 -1161 181 254 15 60 chr6 168538841 168538908 -13876334 - MIR3 SINE MIR -8 200 137 1032 141 0 6 chr6 168538915 168539078 -13876164 - AluSg/x SINE Alu -18 294 133 560 77 95 0 chr6 168539108 168539332 -13875910 + (TA)n Simple_repeat Simple_repeat 1 245 0 2088 102 0 3 chr6 168539335 168539620 -13875622 - AluY SINE Alu -27 284 1 25 0 0 0 chr6 168539794 168539819 -13875423 + AT_rich Low_complexity Low_complexity 1 25 0 1032 141 0 6 chr6 168540155 168540318 -13874924 - AluSx SINE Alu -18 294 133 560 61 117 5 chr6 168540348 168540948 -13874294 + (TA)n Simple_repeat Simple_repeat 1 667 0 2121 102 0 0 chr6 168540951 168541236 -13874006 - AluSx SINE Alu -27 285 1 1074 51 0 15 chr6 168541236 168541373 -13873869 - AluSx SINE Alu -177 135 1 190 239 65 0 chr6 168541374 168541420 -13873822 - MIR SINE MIR -56 152 104 2233 90 3 0 chr6 168542633 168542932 -13872310 - AluSx SINE Alu -12 300 1 207 0 0 0 chr6 168542942 168542965 -13872277 + (T)n Simple_repeat Simple_repeat 1 23 0 302 246 15 0 chr6 168543177 168543242 -13872000 - L2 LINE L2 -18 3254 3189 1369 301 43 28 chr6 168543381 168544099 -13871143 + L1M4 LINE L1 4329 5057 -1089 495 138 128 0 chr6 168544152 168544246 -13870996 - L1MB3 LINE L1 -28 6155 6050 778 243 70 103 chr6 168544299 168544727 -13870515 - L2 LINE L2 -690 2624 2211 2314 71 7 13 chr6 168544733 168545041 -13870201 + AluY SINE Alu 1 306 -5 1066 280 109 12 chr6 168545070 168545481 -13869761 - MLT1J LTR MaLR -33 478 28 303 291 58 10 chr6 168545482 168545585 -13869657 + L2 LINE L2 1845 1952 -1362 1574 174 0 0 chr6 168545705 168545980 -13869262 - AluY SINE Alu -23 288 14 464 194 0 0 chr6 168546002 168546074 -13869168 - AluJ/FLAM SINE Alu -239 73 2 550 120 68 86 chr6 168546075 168546192 -13869050 + Tigger3(Golem) DNA MER2_type 281 395 -2634 308 234 87 92 chr6 168546418 168546602 -13868640 - MLT1H LTR MaLR -259 290 108 593 308 102 13 chr6 168546650 168547023 -13868219 + L1MEd LINE L1 845 1250 -4869 724 246 39 0 chr6 168547124 168547303 -13867939 - MIR SINE MIR 0 262 77 2208 190 63 71 chr6 168547303 168547878 -13867364 - MER74B LTR ERVL 0 622 53 208 193 35 53 chr6 168547891 168547948 -13867294 - MIR SINE MIR -201 61 6 1622 168 13 26 chr6 168548092 168548395 -13866847 - AluJo SINE Alu -13 299 1 372 285 46 40 chr6 168549115 168549266 -13865976 + L2 LINE L2 3161 3312 -1 1976 126 0 4 chr6 168549584 168549861 -13865381 + AluJb SINE Alu 21 296 -16 212 276 0 0 chr6 168550023 168550081 -13865161 + A-rich Low_complexity Low_complexity 1 58 0 358 302 38 9 chr6 168551161 168551267 -13863975 - L2 LINE L2 -5 3267 3159 463 318 149 14 chr6 168551304 168551518 -13863724 + L2 LINE L2 3030 3272 0 249 314 0 0 chr6 168551519 168551589 -13863653 + MIR3 SINE MIR 98 167 -41 494 191 35 43 chr6 168551590 168551705 -13863537 - L2 LINE L2 0 3313 3200 2141 117 4 0 chr6 168551879 168552160 -13863082 + AluSq SINE Alu 1 282 -31 491 127 32 23 chr6 168552160 168552450 -13862792 + (TA)n Simple_repeat Simple_repeat 1 292 0 2274 101 0 13 chr6 168553005 168553313 -13861929 - AluSx SINE Alu -8 304 1 183 337 101 22 chr6 168553952 168554041 -13861201 + MIR SINE MIR 20 115 -147 1933 160 3 7 chr6 168555161 168555332 -13859910 - AluSx SINE Alu -6 306 135 240 35 0 0 chr6 168555332 168555361 -13859881 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1933 160 3 7 chr6 168555361 168555496 -13859746 - AluSx SINE Alu -177 135 1 944 258 73 38 chr6 168555755 168556181 -13859061 + L1ME3A LINE L1 5522 5962 -208 304 336 30 8 chr6 168556233 168556364 -13858878 + L1ME3A LINE L1 5962 6095 -75 201 138 0 0 chr6 168556370 168556399 -13858843 + (TATATG)n Simple_repeat Simple_repeat 5 33 0 5861 115 75 58 chr6 168556399 168556815 -13858427 - Tigger3b DNA MER2_type -1797 1231 824 2083 125 0 0 chr6 168556815 168557111 -13858131 - AluSx SINE Alu -16 296 1 701 206 0 16 chr6 168557121 168557247 -13857995 - FLAM_A SINE Alu -9 124 1 5861 115 75 58 chr6 168557247 168557294 -13857948 - Tigger3b DNA MER2_type -2212 816 771 705 194 0 8 chr6 168557294 168557423 -13857819 + FLAM_A SINE Alu 2 129 -4 5861 115 75 58 chr6 168557423 168557619 -13857623 - Tigger3b DNA MER2_type -2257 771 580 2287 91 0 14 chr6 168557619 168557915 -13857327 + AluY SINE Alu 1 292 -19 759 172 6 70 chr6 168557917 168558074 -13857168 - FRAM SINE Alu -15 151 5 5861 115 75 58 chr6 168558074 168558608 -13856634 - Tigger3b DNA MER2_type -2448 580 1 2359 74 0 10 chr6 168560045 168560344 -13854898 + AluY SINE Alu 1 296 -15 2291 110 0 0 chr6 168560594 168560885 -13854357 + AluSx SINE Alu 1 291 -21 363 305 50 15 chr6 168561317 168561517 -13853725 + L1MC4 LINE L1 7764 7970 -72 241 69 0 0 chr6 168561538 168561567 -13853675 + (T)n Simple_repeat Simple_repeat 1 29 0 273 234 0 65 chr6 168561731 168561838 -13853404 + G-rich Low_complexity Low_complexity 4 103 0 1231 180 9 5 chr6 168562167 168562378 -13852864 + AluJb SINE Alu 87 298 -14 2444 75 0 7 chr6 168562811 168563119 -13852123 + AluY SINE Alu 1 306 -5 21 36 0 0 chr6 168563568 168563596 -13851646 + AT_rich Low_complexity Low_complexity 1 28 0 1735 146 11 18 chr6 168563696 168563971 -13851271 + AluSx SINE Alu 1 273 -39 1947 136 7 0 chr6 168564104 168564390 -13850852 - AluSx SINE Alu -24 288 1 1199 171 43 0 chr6 168565348 168565558 -13849684 - MER20 DNA MER1_type 0 219 1 242 114 0 23 chr6 168565951 168565995 -13849247 + (TA)n Simple_repeat Simple_repeat 2 44 0 225 0 0 0 chr6 168565995 168566020 -13849222 + (GA)n Simple_repeat Simple_repeat 2 26 0 203 313 16 0 chr6 168566278 168566342 -13848900 - L2 LINE L2 0 3313 3249 2416 74 0 0 chr6 168566550 168566846 -13848396 + AluSc SINE Alu 1 296 -13 1817 162 0 34 chr6 168566853 168567174 -13848068 + AluJo SINE Alu 1 310 -2 396 262 49 0 chr6 168567624 168567746 -13847496 - L1MC3 LINE L1 -955 6830 6703 2444 146 33 9 chr6 168567883 168568335 -13846907 - L1MB7 LINE L1 -28 6156 5694 226 89 0 89 chr6 168568335 168568380 -13846862 - L1M4 LINE L1 -451 5733 5693 3600 188 47 8 chr6 168568414 168569174 -13846068 - MER21B LTR ERV1 -1 862 73 1052 210 148 3 chr6 168569220 168569558 -13845684 - L1M4 LINE L1 -2339 5703 5317 1078 145 12 12 chr6 168569571 168569737 -13845505 - FAM SINE Alu -10 175 10 335 182 23 17 chr6 168569774 168569894 -13845348 - L1M4 LINE L1 -820 5326 5239 834 160 13 78 chr6 168570201 168570357 -13844885 - L1MB7 LINE L1 -845 5301 5163 1889 162 10 10 chr6 168570357 168570660 -13844582 + AluJo SINE Alu 1 303 -9 834 160 13 78 chr6 168570660 168570734 -13844508 - L1MB7 LINE L1 -983 5163 5086 2292 101 0 10 chr6 168571104 168571411 -13843831 - AluSx SINE Alu -8 304 1 1876 139 3 17 chr6 168571674 168571968 -13843274 - AluJb SINE Alu -22 290 1 185 0 40 0 chr6 168572174 168572199 -13843043 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 40 0 0 0 chr6 168572303 168572343 -13842899 + AT_rich Low_complexity Low_complexity 1 40 0 2322 93 0 0 chr6 168572384 168572684 -13842558 - AluSc SINE Alu -9 300 1 1040 168 6 0 chr6 168572903 168573076 -13842166 + FAM SINE Alu 1 174 -1 760 154 150 13 chr6 168573145 168573378 -13841864 - Charlie4 DNA MER1_type -3 1958 1694 251 220 85 51 chr6 168573379 168573452 -13841790 - L1MC4 LINE L1 0 8042 7962 2297 89 0 3 chr6 168573452 168573743 -13841499 + AluY SINE Alu 1 290 -21 251 220 85 51 chr6 168573743 168573787 -13841455 - L1MC4 LINE L1 -80 7962 7921 3139 215 42 52 chr6 168574045 168574153 -13841089 - L1MC4 LINE L1 -243 7799 7691 2279 96 3 7 chr6 168574153 168574445 -13840797 - AluSx SINE Alu -21 291 1 3139 215 42 52 chr6 168574445 168575444 -13839798 - L1MC4 LINE L1 -351 7691 6703 902 206 32 32 chr6 168575658 168575905 -13839337 - Charlie4 DNA MER1_type -1714 247 1 2458 88 0 0 chr6 168576010 168576316 -13838926 + AluY SINE Alu 1 306 -5 1888 143 31 3 chr6 168576376 168576670 -13838572 - AluJb SINE Alu -10 302 1 23 33 0 0 chr6 168577333 168577363 -13837879 + AT_rich Low_complexity Low_complexity 1 30 0 660 250 57 40 chr6 168577682 168577978 -13837264 - L1MC4 LINE L1 -1876 5932 5632 325 145 56 9 chr6 168578173 168578396 -13836846 + (TA)n Simple_repeat Simple_repeat 1 233 0 300 314 14 29 chr6 168578402 168578542 -13836700 - L1MC4 LINE L1 -2416 5392 5255 24 0 0 0 chr6 168579181 168579205 -13836037 + AT_rich Low_complexity Low_complexity 1 24 0 2515 78 3 0 chr6 168579699 168580008 -13835234 + AluSx SINE Alu 1 310 -2 294 352 21 28 chr6 168580151 168580296 -13834946 - MER5A DNA MER1_type -21 168 25 6395 58 11 32 chr6 168581674 168582560 -13832682 - SVA Other Other 0 1386 519 230 100 100 0 chr6 168582709 168582749 -13832493 - MSTC LTR MaLR -384 44 1 204 351 46 53 chr6 168582846 168582977 -13832265 + L3 LINE CR1 1402 1531 -46 2395 55 7 19 chr6 168583317 168583627 -13831615 + AluYa5 SINE Alu 1 306 -5 1888 143 31 3 chr6 168583687 168583981 -13831261 - AluJb SINE Alu -10 302 1 23 33 0 0 chr6 168584644 168584674 -13830568 + AT_rich Low_complexity Low_complexity 1 30 0 793 266 100 39 chr6 168584993 168585403 -13829839 - L1MC4a LINE L1 -1876 5932 5498 304 153 53 9 chr6 168585484 168585702 -13829540 + (TA)n Simple_repeat Simple_repeat 1 227 0 300 314 14 29 chr6 168585708 168585848 -13829394 - L1MC4a LINE L1 -2416 5392 5255 24 0 0 0 chr6 168586487 168586511 -13828731 + AT_rich Low_complexity Low_complexity 1 24 0 2506 78 3 0 chr6 168587005 168587313 -13827929 + AluSx SINE Alu 1 309 -3 294 352 21 28 chr6 168587456 168587601 -13827641 - MER5A DNA MER1_type -21 168 25 1643 161 15 15 chr6 168589133 168589406 -13825836 - AluJo SINE Alu -15 297 25 1400 257 128 30 chr6 168589490 168590098 -13825144 - L1MC4 LINE L1 -722 7320 6653 595 193 172 21 chr6 168590157 168590488 -13824754 - L1MEc LINE L1 -4139 2686 2306 689 200 0 0 chr6 168590495 168590615 -13824627 - FLAM_A SINE Alu -12 121 2 740 221 154 53 chr6 168590640 168590888 -13824354 - MSTD LTR MaLR 0 396 100 584 128 15 60 chr6 168590888 168591021 -13824221 - L1MA4 LINE L1 -7 6293 6167 740 221 154 53 chr6 168591021 168591130 -13824112 - MSTD LTR MaLR -296 100 3 918 255 113 18 chr6 168591146 168591402 -13823840 - L1MEc LINE L1 -4544 2281 2051 411 21 0 0 chr6 168591402 168591450 -13823792 + (TG)n Simple_repeat Simple_repeat 2 49 0 918 255 113 18 chr6 168591450 168591644 -13823598 - L1MEc LINE L1 -4774 2051 1788 562 84 32 0 chr6 168591651 168591746 -13823496 - L1MA8 LINE L1 -97 6194 6097 367 292 13 26 chr6 168591753 168591979 -13823263 - L1MEc LINE L1 -4919 1623 1401 938 321 132 25 chr6 168592097 168592772 -13822470 + L2 LINE L2 692 1438 -1876 318 215 192 29 chr6 168593204 168593376 -13821866 + L1ME2 LINE L1 5724 5923 -241 2184 105 7 0 chr6 168593404 168593699 -13821543 - AluSx SINE Alu -15 297 1 2037 177 0 6 chr6 168593882 168594232 -13821010 - MER7A DNA MER2_type 0 346 1 32 26 0 0 chr6 168594454 168594493 -13820749 + AT_rich Low_complexity Low_complexity 1 39 0 279 321 48 0 chr6 168594735 168594819 -13820423 - MIR SINE MIR -154 108 21 35 0 0 0 chr6 168594821 168594856 -13820386 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chr6 168595018 168595067 -13820175 + AT_rich Low_complexity Low_complexity 1 49 0 1084 187 0 6 chr6 168597551 168597733 -13817509 - AluJb SINE Alu 0 312 132 207 368 69 0 chr6 168598937 168599024 -13816218 + MIR3 SINE MIR 68 160 -48 506 163 0 0 chr6 168599663 168599743 -13815499 + AluJ/FLAM SINE Alu 3 82 -230 25 65 0 0 chr6 168601618 168601664 -13813578 + AT_rich Low_complexity Low_complexity 1 46 0 375 303 88 37 chr6 168601811 168602297 -13812945 - HAL1 LINE L1 -1252 1255 745 227 276 106 32 chr6 168602393 168602516 -13812726 - HAL1 LINE L1 -2375 132 1 1987 145 0 10 chr6 168603766 168604069 -13811173 - AluJo SINE Alu -12 300 1 2840 139 64 26 chr6 168605716 168605789 -13809453 - L1MB7 LINE L1 0 6184 6115 1526 171 57 37 chr6 168605789 168606087 -13809155 - AluJo SINE Alu -6 306 3 2840 139 64 26 chr6 168606087 168606588 -13808654 - L1MB7 LINE L1 -69 6115 5588 2506 77 0 3 chr6 168606821 168607131 -13808111 - AluSc SINE Alu 0 309 1 331 179 0 18 chr6 168607405 168607461 -13807781 + Tigger5 DNA MER2_type 1 55 -2268 369 183 0 0 chr6 168607482 168607542 -13807700 + Tigger5 DNA MER2_type 2264 2323 0 2102 90 16 58 chr6 168607689 168607999 -13807243 + AluSg SINE Alu 1 297 -13 372 214 46 53 chr6 168608097 168608228 -13807014 + HAL1b LINE L1 525 654 -694 260 273 11 45 chr6 168608301 168608389 -13806853 + HAL1b LINE L1 498 582 -766 24 100 0 0 chr6 168608519 168608599 -13806643 + AT_rich Low_complexity Low_complexity 1 80 0 2294 106 10 6 chr6 168608754 168609065 -13806177 - AluSq SINE Alu -1 312 1 24 0 0 0 chr6 168609345 168609369 -13805873 + AT_rich Low_complexity Low_complexity 1 24 0 2098 112 22 0 chr6 168609369 168609646 -13805596 - AluSx SINE Alu -29 283 1 703 274 68 40 chr6 168609698 168610629 -13804613 + L1MEc LINE L1 1342 2383 -4013 253 274 153 39 chr6 168610624 168610879 -13804363 + L1MEc LINE L1 3327 3610 -2605 * 1692 259 63 28 chr6 168611008 168611719 -13803523 + L1MEc LINE L1 3590 4325 -1890 431 235 124 39 chr6 168611721 168611874 -13803368 + MER104 DNA Tc2 1 166 -14 242 289 175 26 chr6 168612007 168612235 -13803007 + L1MC4 LINE L1 7781 8042 0 641 253 147 26 chr6 168612237 168612549 -13802693 + L1MEc LINE L1 4547 4896 -1319 578 272 38 43 chr6 168612545 168612780 -13802462 + L1M4 LINE L1 2 235 -6624 * 483 233 108 45 chr6 168613073 168613413 -13801829 + L1M4 LINE L1 3627 3944 -3013 1929 140 7 4 chr6 168613413 168613692 -13801550 - AluSx SINE Alu -26 286 7 1930 137 3 3 chr6 168613692 168613976 -13801266 + AluJb SINE Alu 23 307 -5 483 233 108 45 chr6 168613976 168614033 -13801209 + L1M4 LINE L1 3943 4050 -2907 2873 132 55 11 chr6 168614363 168614918 -13800324 + L1MEc LINE L1 5233 5809 -604 492 129 32 0 chr6 168615022 168615115 -13800127 + AluSg/x SINE Alu 217 312 0 2481 67 0 3 chr6 168619255 168619554 -13795688 - AluSx SINE Alu -14 298 1 1085 176 167 75 chr6 168619851 168620186 -13795056 + MER47A DNA MER2_type 1 366 0 2304 79 0 7 chr6 168620956 168621246 -13793996 - AluSg SINE Alu -2 308 21 1599 198 38 3 chr6 168621634 168621927 -13793315 - AluJb SINE Alu -9 303 1 882 146 0 0 chr6 168621937 168622060 -13793182 - FLAM_C SINE Alu -19 124 2 2230 139 36 47 chr6 168622309 168622649 -13792593 - L1MB7 LINE L1 -9 6175 5840 2298 98 0 7 chr6 168622649 168622954 -13792288 - AluY SINE Alu -7 304 2 2230 139 36 47 chr6 168622954 168623059 -13792183 - L1MB7 LINE L1 -344 5840 5735 2674 58 0 0 chr6 168623078 168623387 -13791855 - AluY SINE Alu -2 309 1 1918 120 53 3 chr6 168623455 168623738 -13791504 - AluSx SINE Alu -15 297 1 2137 108 10 22 chr6 168624239 168624553 -13790689 + AluSg SINE Alu 1 310 0 2481 67 0 3 chr6 168628689 168628988 -13786254 - AluSx SINE Alu -14 298 1 1104 173 167 75 chr6 168629285 168629620 -13785622 + MER47A DNA MER2_type 1 366 0 2181 81 0 7 chr6 168630407 168630678 -13784564 - AluSg SINE Alu -21 289 21 1599 198 38 3 chr6 168631065 168631358 -13783884 - AluJb SINE Alu -9 303 1 896 138 0 0 chr6 168631368 168631491 -13783751 - FLAM_C SINE Alu -19 124 2 2230 139 36 47 chr6 168631738 168632078 -13783164 - L1MB7 LINE L1 -9 6175 5840 2298 98 0 7 chr6 168632078 168632383 -13782859 - AluY SINE Alu -7 304 2 2230 139 36 47 chr6 168632383 168632488 -13782754 - L1MB7 LINE L1 -344 5840 5735 2526 68 3 0 chr6 168632507 168632815 -13782427 - AluY SINE Alu -2 309 1 2034 156 0 6 chr6 168633006 168633320 -13781922 + AluSx SINE Alu 1 312 0 1342 121 70 9 chr6 168635567 168635601 -13779641 + AluJb SINE Alu 85 116 -196 186 43 0 0 chr6 168635601 168635624 -13779618 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1342 121 70 9 chr6 168635624 168635804 -13779438 + AluJb SINE Alu 116 312 0 251 125 62 21 chr6 168635853 168635901 -13779341 + L1ME LINE L1 5805 5854 -267 195 42 0 0 chr6 168635956 168635980 -13779262 + (A)n Simple_repeat Simple_repeat 1 24 0 284 344 38 12 chr6 168638041 168638201 -13777041 + MER5B DNA MER1_type 1 164 -14 2077 132 7 3 chr6 168638532 168638828 -13776414 + AluJb SINE Alu 1 297 -15 1928 124 0 25 chr6 168639050 168639333 -13775909 - AluSx SINE Alu -36 276 1 2288 106 0 0 chr6 168640623 168640916 -13774326 + AluSx SINE Alu 1 293 -19 2053 106 7 38 chr6 168641190 168641343 -13773899 - AluSx SINE Alu -24 288 147 2419 102 0 0 chr6 168641343 168641648 -13773594 - AluSg SINE Alu -4 306 2 2053 106 7 38 chr6 168641648 168641787 -13773455 - AluSx SINE Alu -165 147 5 1528 180 0 96 chr6 168641902 168642236 -13773006 + AluJo SINE Alu 1 302 0 559 304 94 45 chr6 168643128 168643359 -13771883 + L1ME4a LINE L1 5502 5753 -368 2299 106 3 0 chr6 168643359 168643662 -13771580 - AluSx SINE Alu -8 304 1 559 304 94 45 chr6 168643662 168643739 -13771503 + L1ME4a LINE L1 5753 5825 -296 380 206 73 44 chr6 168643932 168644068 -13771174 + L2 LINE L2 3169 3308 -5 1850 126 69 0 chr6 168644191 168644468 -13770774 + AluSx SINE Alu 3 298 -14 2426 94 0 13 chr6 168644758 168645065 -13770177 + AluSx SINE Alu 1 303 -9 318 224 86 59 chr6 168645097 168645249 -13769993 + L1ME3A LINE L1 5711 5866 -304 252 0 0 0 chr6 168646175 168646203 -13769039 + (T)n Simple_repeat Simple_repeat 1 28 0 2470 80 6 10 chr6 168646560 168646873 -13768369 + AluSp SINE Alu 1 312 -1 184 293 24 49 chr6 168647535 168647617 -13767625 + L2 LINE L2 3191 3270 -2 1495 152 13 0 chr6 168647672 168647896 -13767346 - AluJb SINE Alu -36 276 50 1081 82 15 0 chr6 168648200 168648335 -13766907 - AluSp/q SINE Alu -17 296 160 2101 111 0 3 chr6 168648850 168649138 -13766104 + AluSx SINE Alu 21 307 -5 244 364 25 25 chr6 168650114 168650276 -13764966 - MIR3 SINE MIR -59 149 6 777 237 63 0 chr6 168650357 168650547 -13764695 + MER3 DNA MER1_type 2 203 -6 1993 139 7 0 chr6 168650565 168650866 -13764376 + AluSx SINE Alu 1 303 -9 2133 112 0 10 chr6 168652111 168652416 -13762826 - AluSx SINE Alu -9 303 2 27 0 0 0 chr6 168655158 168655185 -13760057 + AT_rich Low_complexity Low_complexity 1 27 0 2188 115 3 0 chr6 168655999 168656311 -13758931 + AluSq SINE Alu 1 313 0 2257 88 0 3 chr6 168659630 168659924 -13755318 - AluSg SINE Alu -2 308 16 2091 187 24 46 chr6 168660078 168660537 -13754705 + MER82 DNA MER2_type 2 450 -203 393 264 0 0 chr6 168660563 168660654 -13754588 + MER82 DNA MER2_type 556 646 -7 208 235 20 0 chr6 168661332 168661383 -13753859 + G-rich Low_complexity Low_complexity 5 56 0 2374 85 0 0 chr6 168663463 168663770 -13751472 + AluSq SINE Alu 1 307 -6 1897 149 0 20 chr6 168664375 168664671 -13750571 - AluJo SINE Alu -20 292 3 362 285 139 15 chr6 168665066 168665203 -13750039 + L1ME4a LINE L1 5945 6098 -23 219 346 102 16 chr6 168665744 168665871 -13749371 + MIR SINE MIR 89 226 -36 299 143 26 8 chr6 168667215 168667291 -13747951 - Alu SINE Alu 0 308 254 297 0 0 0 chr6 168667780 168667813 -13747429 + (CA)n Simple_repeat Simple_repeat 2 34 0 740 213 0 9 chr6 168668865 168669038 -13746204 + L1MC4 LINE L1 6861 7090 -779 938 183 5 5 chr6 168669038 168669629 -13745613 + (TGGA)n Simple_repeat Simple_repeat 1 591 0 226 273 0 42 chr6 168669670 168669813 -13745429 + (TGGG)n Simple_repeat Simple_repeat 1 137 0 2365 252 112 17 chr6 168669813 168670530 -13744712 + L1MC4 LINE L1 7085 7901 -141 2505 150 47 2 chr6 168670530 168670937 -13744305 + MSTB LTR MaLR 1 425 -1 2365 252 112 17 chr6 168670937 168671091 -13744151 + L1MC4 LINE L1 7901 8039 -3 1929 153 0 28 chr6 168671331 168671651 -13743591 - AluJb SINE Alu -1 311 1 818 159 88 24 chr6 168672943 168673113 -13742129 + MER5A DNA MER1_type 1 181 -8 633 231 26 13 chr6 168674425 168674581 -13740661 - MER63A DNA MER1_type 0 210 53 661 259 17 0 chr6 168674631 168674805 -13740437 - MER5B DNA MER1_type -1 177 1 281 202 333 0 chr6 168675158 168675242 -13740000 + L2 LINE L2 3161 3272 0 556 253 82 66 chr6 168675462 168675510 -13739732 - MIR SINE MIR 0 262 216 2019 146 7 0 chr6 168675510 168675818 -13739424 - AluSx SINE Alu -2 310 1 556 253 82 66 chr6 168675818 168676026 -13739216 - MIR SINE MIR -46 216 2 2218 114 0 9 chr6 168677067 168677382 -13737860 + AluSx SINE Alu 1 312 0 230 332 150 44 chr6 168677511 168677903 -13737339 + L3 LINE CR1 1049 1501 -76 2292 100 0 7 chr6 168677903 168678213 -13737029 + AluSx SINE Alu 1 308 -4 230 332 150 44 chr6 168678213 168678293 -13736949 + L3 LINE CR1 1501 1571 -6 659 259 72 25 chr6 168678473 168678709 -13736533 + L1MB8 LINE L1 5926 6172 -6 1593 176 19 19 chr6 168681298 168681605 -13733637 + AluJo SINE Alu 1 307 -5 301 284 102 76 chr6 168682035 168682274 -13732968 + MIR SINE MIR 6 250 -12 248 248 38 17 chr6 168682912 168683153 -13732089 + (CA)n Simple_repeat Simple_repeat 1 246 0 1327 201 129 46 chr6 168685497 168685612 -13729630 + MLT1C LTR MaLR 8 112 -355 2567 49 0 0 chr6 168685612 168685919 -13729323 + AluY SINE Alu 1 307 -4 1327 201 129 46 chr6 168685919 168686220 -13729022 + MLT1C LTR MaLR 112 459 -8 3911 146 62 22 chr6 168686525 168687499 -13727743 - L1PA13 LINE L1 -8 6155 5142 6045 148 41 6 chr6 168687505 168688593 -13726649 + L1PA13 LINE L1 3988 5114 -1032 668 255 54 33 chr6 168690509 168690730 -13724512 - MIR SINE MIR -2 260 31 291 253 116 0 chr6 168692258 168692353 -13722889 + MER5A DNA MER1_type 4 109 -80 2217 108 0 9 chr6 168692387 168692702 -13722540 - AluSx SINE Alu 0 312 1 699 261 43 51 chr6 168693325 168693578 -13721664 + MIR SINE MIR 4 254 -8 235 330 0 11 chr6 168693611 168693699 -13721543 + MIR SINE MIR 175 261 -1 2033 118 0 50 chr6 168693721 168694044 -13721198 - AluSx SINE Alu -4 308 2 624 190 158 0 chr6 168694746 168694904 -13720338 + MER5A DNA MER1_type 7 189 0 242 258 31 21 chr6 168695438 168695535 -13719707 + L2 LINE L2 2965 3062 -210 390 274 103 0 chr6 168696879 168697025 -13718217 - MIR SINE MIR -78 184 24 246 258 31 117 chr6 168697307 168697435 -13717807 - MIR SINE MIR -65 143 19 363 44 0 0 chr6 168697467 168697512 -13717730 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2187 107 3 0 chr6 168697514 168697814 -13717428 - AluSp SINE Alu -12 301 1 1952 94 62 4 chr6 168697815 168698091 -13717151 - AluSq SINE Alu -21 292 1 1331 260 66 98 chr6 168698096 168698130 -13717112 - Charlie2 DNA MER1_type -28 2834 2800 1337 225 69 14 chr6 168698130 168698476 -13716766 + MLT1A1 LTR MaLR 1 365 0 1331 260 66 98 chr6 168698476 168699057 -13716185 - Charlie2 DNA MER1_type -62 2800 2260 1858 109 0 35 chr6 168699057 168699342 -13715900 - AluSx SINE Alu -37 275 1 1331 260 66 98 chr6 168699342 168699713 -13715529 - Charlie2 DNA MER1_type -602 2260 1879 333 339 148 9 chr6 168699737 168699967 -13715275 - Charlie2 DNA MER1_type -2464 318 57 1481 189 6 40 chr6 168700195 168700517 -13714725 - AluJo SINE Alu -1 311 1 232 305 12 0 chr6 168700815 168700897 -13714345 + MIR SINE MIR 40 122 -86 347 260 58 29 chr6 168701529 168701633 -13713609 - MER63 DNA MER1_type -82 754 22 398 286 31 0 chr6 168702230 168702328 -13712914 - MER91C DNA MER1_type -1 139 39 252 333 30 0 chr6 168704153 168704252 -13710990 + MIR SINE MIR 3 104 -158 249 313 92 6 chr6 168704253 168704416 -13710826 - MER104 DNA Tc2 -3 177 1 312 329 108 0 chr6 168704670 168704828 -13710414 + MIR SINE MIR 76 250 -12 2271 102 3 3 chr6 168705769 168706082 -13709160 + AluSp SINE Alu 1 313 0 394 221 10 48 chr6 168706888 168706992 -13708250 - Charlie4a DNA MER1_type -8 500 401 1248 162 52 48 chr6 168706992 168707065 -13708177 + L1MB8 LINE L1 5847 5918 -260 2096 104 0 20 chr6 168707065 168707363 -13707879 + AluSx SINE Alu 1 292 -20 1248 162 52 48 chr6 168707363 168707523 -13707719 + L1MB8 LINE L1 5918 6084 -94 186 43 0 0 chr6 168707523 168707546 -13707696 + (ATGGTG)n Simple_repeat Simple_repeat 2 24 0 1248 162 52 48 chr6 168707546 168707620 -13707622 + L1MB8 LINE L1 6084 6156 -22 1182 220 48 75 chr6 168707620 168708074 -13707168 - Charlie4a DNA MER1_type -66 442 1 2374 200 132 9 chr6 168708958 168709142 -13706100 + MER82 DNA MER2_type 7 167 -486 1966 189 11 22 chr6 168709142 168709512 -13705730 - MER47A DNA MER2_type 0 366 1 2374 200 132 9 chr6 168709512 168709903 -13705339 + MER82 DNA MER2_type 167 653 0 1865 143 17 0 chr6 168710098 168710385 -13704857 - AluSx SINE Alu -20 292 1 1927 227 35 7 chr6 168710782 168711240 -13704002 - MLT1D LTR MaLR -2 503 33 472 291 54 36 chr6 168712107 168712330 -13702912 - MLT1C LTR MaLR -36 431 205 899 204 40 18 chr6 168712669 168712894 -13702348 - MLT1C LTR MaLR -237 230 1 294 272 200 38 chr6 168713214 168713265 -13701977 - MER102b DNA MER1_type -1089 339 298 1533 161 95 11 chr6 168713265 168713550 -13701692 + AluJo SINE Alu 1 309 -3 294 272 200 38 chr6 168713550 168713788 -13701454 - MER102b DNA MER1_type -1130 298 3 190 259 52 0 chr6 168714012 168714070 -13701172 - L2 LINE L2 -28 3285 3225 654 291 171 22 chr6 168714231 168714763 -13700479 - L2 LINE L2 -142 3171 2552 195 69 0 0 chr6 168714768 168714797 -13700445 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 634 226 110 6 chr6 168714944 168715108 -13700134 + MER5A DNA MER1_type 9 189 0 421 208 10 0 chr6 168715109 168715205 -13700037 - L1MC5 LINE L1 -177 7784 7688 865 97 0 0 chr6 168715212 168715325 -13699917 + AluSq/x SINE Alu 1 113 -200 704 201 0 29 chr6 168715392 168715531 -13699711 + AluJo SINE Alu 1 135 -177 1405 198 6 41 chr6 168715531 168715845 -13699397 + AluSq SINE Alu 1 303 -10 271 162 0 44 chr6 168715846 168715914 -13699328 - L1MC5 LINE L1 -271 7690 7626 1593 274 123 94 chr6 168715915 168716217 -13699025 - L2 LINE L2 -777 2537 2245 1640 164 7 14 chr6 168716217 168716510 -13698732 + AluJb SINE Alu 1 291 -21 2130 102 0 3 chr6 168716516 168716809 -13698433 + AluSx SINE Alu 6 297 -15 228 111 28 0 chr6 168716809 168716845 -13698397 + Alu SINE Alu 132 168 -132 1593 274 123 94 chr6 168716845 168718108 -13697134 - L2 LINE L2 -1073 2241 865 2350 57 10 0 chr6 168718108 168718404 -13696838 + AluY SINE Alu 1 299 -12 1593 274 123 94 chr6 168718404 168718663 -13696579 - L2 LINE L2 -2449 865 615 4571 109 18 2 chr6 168718710 168719335 -13695907 - MER41B LTR ERV1 0 635 1 352 182 39 0 chr6 168719542 168719619 -13695623 - L2 LINE L2 -2855 459 380 244 268 37 37 chr6 168721253 168721335 -13693907 - L2 LINE L2 -1 3312 3231 830 300 230 17 chr6 168721411 168721786 -13693456 - L2 LINE L2 -1393 1921 1627 2342 65 7 10 chr6 168721786 168722096 -13693146 + AluSq SINE Alu 1 309 -4 830 300 230 17 chr6 168722096 168722437 -13692805 - L2 LINE L2 -1687 1627 1052 342 0 0 0 chr6 168723380 168723418 -13691824 + (A)n Simple_repeat Simple_repeat 1 38 0 435 247 24 71 chr6 168724302 168724557 -13690685 - L1M4 LINE L1 -771 5375 5133 579 200 59 0 chr6 168724582 168724717 -13690525 + L1ME3A LINE L1 6020 6162 -8 1718 163 119 93 chr6 168725813 168726266 -13688976 - MLT1C LTR MaLR 0 467 3 2464 152 49 2 chr6 168726503 168726912 -13688330 - MSTA LTR MaLR 0 428 1 435 328 45 42 chr6 168727031 168727363 -13687879 - L2 LINE L2 -614 2700 2368 376 331 155 18 chr6 168727416 168727694 -13687548 - L1M4 LINE L1 -1529 4617 4302 2287 76 0 19 chr6 168729363 168729680 -13685562 + AluY SINE Alu 1 311 0 225 0 0 0 chr6 168729746 168729771 -13685471 + (A)n Simple_repeat Simple_repeat 1 25 0 2177 120 0 6 chr6 168729813 168730365 -13684877 + L1MA2 LINE L1 5020 5569 -733 5272 63 20 60 chr6 168730439 168730798 -13684444 + L1MA2 LINE L1 5557 5929 -375 2078 79 64 0 chr6 168730798 168731078 -13684164 + AluSx SINE Alu 15 312 0 5272 63 20 60 chr6 168731078 168731497 -13683745 + L1MA2 LINE L1 5929 6304 0 282 321 113 25 chr6 168731868 168732027 -13683215 - MIR3 SINE MIR -7 201 29 364 196 120 0 chr6 168732038 168732130 -13683112 + MER5A DNA MER1_type 4 106 -83 360 0 0 0 chr6 168734014 168734054 -13681188 + (TA)n Simple_repeat Simple_repeat 2 41 0 686 240 69 6 chr6 168734111 168734286 -13680956 + MIR SINE MIR 76 261 -1 718 216 28 34 chr6 168734968 168735144 -13680098 - MER115 DNA AcHobo 0 693 519 247 296 69 57 chr6 168735352 168735511 -13679731 - MER115 DNA AcHobo -462 231 71 862 118 66 88 chr6 168735688 168735780 -13679462 + L1MA7 LINE L1 6069 6161 -130 2235 107 0 3 chr6 168735780 168736090 -13679152 + AluSx SINE Alu 1 309 -3 862 118 66 88 chr6 168736090 168736195 -13679047 + L1MA7 LINE L1 6161 6263 -28 2061 118 0 0 chr6 168736195 168736483 -13678759 + AluSx SINE Alu 1 288 -24 862 118 66 88 chr6 168736483 168736512 -13678730 + L1MA7 LINE L1 6263 6291 0 228 287 85 11 chr6 168736639 168736733 -13678509 + L1MC5 LINE L1 7806 7906 -55 2007 113 20 3 chr6 168736976 168737269 -13677973 + AluSx SINE Alu 1 298 -14 2009 121 3 16 chr6 168738907 168739214 -13676028 + AluSq SINE Alu 1 303 -10 1691 166 0 39 chr6 168739471 168739779 -13675463 + AluJb SINE Alu 1 296 -16 569 211 60 0 chr6 168740774 168740907 -13674335 + MIR SINE MIR 83 223 -39 212 167 0 0 chr6 168741777 168741813 -13673429 + CT-rich Low_complexity Low_complexity 2 37 0 28 91 0 0 chr6 168741843 168741920 -13673322 + GC_rich Low_complexity Low_complexity 1 77 0 576 247 65 12 chr6 168743446 168743616 -13671626 - MER104 DNA MER2_type -1 179 1 1076 220 89 77 chr6 168744136 168744292 -13670950 + MLT1A2 LTR MaLR 21 174 -200 2176 121 0 6 chr6 168744292 168744605 -13670637 + AluSx SINE Alu 1 311 -1 1076 220 89 77 chr6 168744605 168744776 -13670466 + MLT1A2 LTR MaLR 174 355 -19 2495 166 32 0 chr6 168744776 168745187 -13670055 - MSTB LTR MaLR -2 424 1 1076 220 89 77 chr6 168745187 168745208 -13670034 + MLT1A2 LTR MaLR 355 374 0 351 192 110 0 chr6 168745551 168745624 -13669618 - MSTB LTR MaLR -251 175 95 189 299 175 0 chr6 168745624 168745721 -13669521 - L2 LINE L2 -273 3040 2927 574 281 39 89 chr6 168746975 168747110 -13668132 + L2 LINE L2 2952 3092 -221 2177 149 10 59 chr6 168747110 168747269 -13667973 + MLT1B LTR MaLR 2 167 -223 1802 160 3 10 chr6 168747269 168747569 -13667673 + AluJo SINE Alu 2 299 -13 1881 152 3 7 chr6 168747569 168747879 -13667363 + AluJo SINE Alu 1 309 -3 2177 149 10 59 chr6 168747879 168748127 -13667115 + MLT1B LTR MaLR 165 390 0 574 281 39 89 chr6 168748127 168748372 -13666870 + L2 LINE L2 3092 3313 0 1415 251 142 22 chr6 168748465 168749388 -13665854 - L2 LINE L2 -4 3309 2224 260 233 70 70 chr6 168749388 168749517 -13665725 - MER95 LTR ERV 0 431 303 * 866 173 26 0 chr6 168749516 168749672 -13665570 - MER95 LTR ERV -261 170 11 1104 275 42 3 chr6 168749675 168750031 -13665211 - L2 LINE L2 -1085 2229 1860 2232 121 0 3 chr6 168750135 168750442 -13664800 + AluSx SINE Alu 7 312 0 756 92 17 50 chr6 168750873 168750992 -13664250 + AluSq/x SINE Alu 2 116 -196 1636 222 141 64 chr6 168751122 168751794 -13663448 - L1MC5 LINE L1 -562 7399 6676 1952 169 0 0 chr6 168752270 168752566 -13662676 + AluJo SINE Alu 1 296 -16 947 202 205 16 chr6 168752677 168752999 -13662243 + LTR54B LTR ERV1 5 387 -111 2349 90 10 0 chr6 168753002 168753303 -13661939 - AluSq SINE Alu -9 304 1 248 288 58 50 chr6 168753485 168753624 -13661618 + MIR SINE MIR 24 163 -99 589 282 47 80 chr6 168753758 168754123 -13661119 + LTR49-int LTR ERV1 1890 2242 -4089 * 602 224 19 19 chr6 168754094 168754255 -13660987 + LTR49-int LTR ERV1 329 489 -7048 2311 93 7 0 chr6 168754314 168754614 -13660628 + AluSx SINE Alu 2 303 -9 280 319 0 33 chr6 168754641 168754732 -13660510 + LTR49-int LTR ERV1 2327 2414 -3917 981 71 0 0 chr6 168754792 168754919 -13660323 + L1PA7 LINE L1 6028 6154 0 1103 103 0 52 chr6 168755137 168755311 -13659931 + L1PA8 LINE L1 6008 6172 0 240 296 17 17 chr6 168756790 168756905 -13658337 + L3 LINE CR1 1338 1452 -125 556 246 117 109 chr6 168757188 168757244 -13657998 - MLT1L LTR MaLR -8 607 553 2358 94 3 3 chr6 168757244 168757551 -13657691 + AluSq SINE Alu 4 310 -3 556 246 117 109 chr6 168757551 168757897 -13657345 - MLT1L LTR MaLR -62 553 202 2341 112 0 0 chr6 168758311 168758616 -13656626 - AluSx SINE Alu -7 305 1 1695 156 62 0 chr6 168758619 168758894 -13656348 - AluJb SINE Alu -20 292 1 2394 105 0 3 chr6 168759464 168759804 -13655438 + AluSx SINE Alu 1 339 0 2051 119 0 39 chr6 168760606 168760917 -13654325 - AluSx SINE Alu -13 299 1 1748 171 13 7 chr6 168761124 168761434 -13653808 + AluJb SINE Alu 1 312 0 319 273 34 40 chr6 168761971 168762124 -13653118 - MLT1I LTR MaLR -3 444 296 2089 135 3 0 chr6 168762508 168762805 -13652437 + AluSx SINE Alu 14 311 -1 1010 259 32 18 chr6 168762814 168763154 -13652088 + L1MEc LINE L1 39 383 -6013 204 111 0 0 chr6 168763154 168763190 -13652052 + (GA)n Simple_repeat Simple_repeat 1 36 0 1979 163 65 6 chr6 168763193 168763530 -13651712 - MLT1A1 LTR MaLR -6 359 3 479 66 13 0 chr6 168763539 168763615 -13651627 + (TG)n Simple_repeat Simple_repeat 2 78 0 4441 237 68 38 chr6 168763625 168764701 -13650541 + L1MEc LINE L1 364 1406 -4990 2395 97 0 0 chr6 168764701 168764999 -13650243 + AluY SINE Alu 1 298 -13 4441 237 68 38 chr6 168764999 168765123 -13650119 + L1MEc LINE L1 1406 1525 -4871 1802 134 33 42 chr6 168765123 168765429 -13649813 + AluJo SINE Alu 1 303 -9 4441 237 68 38 chr6 168765429 168765681 -13649561 + L1MEc LINE L1 1525 1768 -4628 2379 65 0 39 chr6 168765681 168765989 -13649253 + AluY SINE Alu 1 296 -15 4441 237 68 38 chr6 168765989 168766178 -13649064 + L1MEc LINE L1 1768 2056 -4340 651 182 81 0 chr6 168766200 168766348 -13648894 + L1MEc LINE L1 2114 2273 -4123 1897 161 0 13 chr6 168766536 168766847 -13648395 - AluJo SINE Alu -5 307 1 2192 131 0 0 chr6 168767127 168767425 -13647817 + AluSx SINE Alu 1 298 -14 253 204 0 0 chr6 168767498 168767552 -13647690 - L1MC4a LINE L1 -549 7259 7206 2131 128 0 3 chr6 168767662 168767960 -13647282 - AluSx SINE Alu -15 297 1 1769 150 19 22 chr6 168769655 168769968 -13645274 + AluJb SINE Alu 1 312 0 271 343 42 32 chr6 168770056 168770272 -13644970 - L2 LINE L2 -623 2691 2474 2219 102 0 3 chr6 168770487 168770781 -13644461 + AluSx SINE Alu 1 293 -19 602 195 88 21 chr6 168771269 168771547 -13643695 - MLT1A1 LTR MaLR -17 348 2 8906 128 44 10 chr6 168771673 168774304 -13640938 - L1MA2 LINE L1 0 6304 3582 1804 157 31 3 chr6 168774402 168774727 -13640515 + L1MB3 LINE L1 5850 6183 0 257 239 44 44 chr6 168774958 168775071 -13640171 + L1MC4 LINE L1 6959 7071 -971 633 218 259 0 chr6 168775855 168776029 -13639213 - MER20 DNA MER1_type 0 219 1 1237 234 97 25 chr6 168776748 168777179 -13638063 - LTR40c LTR ERVL -1 464 3 1800 121 64 11 chr6 168777348 168777628 -13637614 + AluSx SINE Alu 1 295 -17 392 213 0 53 chr6 168777839 168777933 -13637309 + LTR40b LTR ERVL 358 446 -16 285 317 69 10 chr6 168781007 168781108 -13634134 + L2 LINE L2 3161 3267 -5 2086 115 11 0 chr6 168782598 168782902 -13632340 + AluSx SINE Alu 1 307 0 22 0 0 0 chr6 168786420 168786442 -13628800 + AT_rich Low_complexity Low_complexity 1 22 0 301 324 56 0 chr6 168786553 168786695 -13628547 - MIR SINE MIR -21 241 92 1945 123 65 0 chr6 168786794 168787070 -13628172 - AluJb SINE Alu -18 294 1 1339 230 114 66 chr6 168787702 168788516 -13626726 - L1MC5 LINE L1 -390 7571 6612 23 33 0 0 chr6 168788584 168788614 -13626628 + AT_rich Low_complexity Low_complexity 1 30 0 303 303 77 26 chr6 168788852 168789007 -13626235 - L1MC4a LINE L1 -1583 6225 6063 264 222 189 0 chr6 168789057 168789147 -13626095 - U6 snRNA snRNA 0 107 1 1286 162 0 31 chr6 168790002 168790224 -13625018 - AluJo SINE Alu -11 301 87 2057 145 3 6 chr6 168790420 168790731 -13624511 - AluJb SINE Alu -2 310 1 298 245 130 0 chr6 168791478 168791599 -13623643 - MIR SINE MIR -62 146 2 243 302 58 0 chr6 168791702 168791788 -13623454 + MIR3 SINE MIR 116 206 -2 1535 139 73 93 chr6 168792522 168792866 -13622376 - MER1B DNA MER1_type 0 337 1 1144 224 9 5 chr6 168793201 168793424 -13621818 - MER58A DNA MER1_type 0 224 1 25 51 0 0 chr6 168794943 168794982 -13620260 + AT_rich Low_complexity Low_complexity 1 39 0 363 281 65 32 chr6 168795166 168795351 -13619891 + L1ME4a LINE L1 5831 6021 -100 207 0 0 0 chr6 168795361 168795384 -13619858 + (TG)n Simple_repeat Simple_repeat 2 24 0 1315 40 0 0 chr6 168795446 168795596 -13619646 + AluY SINE Alu 158 307 -4 1958 167 3 0 chr6 168796510 168796815 -13618427 - AluJb SINE Alu -6 306 1 292 281 20 77 chr6 168796920 168797116 -13618126 - L1ME3A LINE L1 -8 6162 5978 1507 180 44 49 chr6 168797155 168797522 -13617720 + MLT1A1 LTR MaLR 1 365 0 1327 287 109 13 chr6 168797601 168798421 -13616821 - L1ME3A LINE L1 -257 5905 4981 1754 116 8 4 chr6 168799115 168799356 -13615886 - AluSx SINE Alu -27 285 44 489 268 147 22 chr6 168799420 168799998 -13615244 - L1ME3A LINE L1 -1176 4970 4229 402 359 0 6 chr6 168800047 168800203 -13615039 - MIR3 SINE MIR -48 160 6 186 339 77 51 chr6 168801432 168801627 -13613615 - L3b LINE CR1 -165 1418 1219 232 269 45 0 chr6 168802676 168802743 -13612499 + L1ME1 LINE L1 105 174 -6368 1498 237 82 51 chr6 168803252 168803332 -13611910 + L1ME1 LINE L1 915 991 -5551 261 0 0 0 chr6 168803332 168803361 -13611881 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1498 237 82 51 chr6 168803361 168804021 -13611221 + L1ME1 LINE L1 991 1577 -4965 3044 228 49 16 chr6 168804122 168805413 -13609829 + L1ME1 LINE L1 2068 3367 -3277 2147 149 21 0 chr6 168805416 168805744 -13609498 - MER2 DNA MER2_type -1 344 10 6253 214 74 37 chr6 168805751 168806981 -13608261 + L1ME1 LINE L1 3369 4553 -2111 2588 64 0 0 chr6 168806981 168807292 -13607950 + AluY SINE Alu 1 311 0 6253 214 74 37 chr6 168807292 168807478 -13607764 + L1ME1 LINE L1 4553 4731 -1933 2036 99 6 117 chr6 168807478 168807811 -13607431 - AluSx SINE Alu -6 296 1 6253 214 74 37 chr6 168807811 168808543 -13606699 + L1ME1 LINE L1 4731 5435 -1229 1990 143 0 7 chr6 168808543 168808851 -13606391 + AluJb SINE Alu 7 312 0 6253 214 74 37 chr6 168808851 168809794 -13605448 + L1ME1 LINE L1 5435 6646 -18 842 204 87 23 chr6 168809814 168810026 -13605216 + AluJb SINE Alu 103 325 0 233 304 43 0 chr6 168811691 168811760 -13603482 + MIR SINE MIR 93 164 -98 1856 88 73 0 chr6 168812170 168812463 -13602779 - AluY SINE Alu 0 313 2 445 210 406 9 chr6 168813953 168814182 -13601060 - MER5C DNA MER1_type -4 320 1 2287 80 0 14 chr6 168815731 168816044 -13599198 + AluSg SINE Alu 1 309 0 381 268 73 24 chr6 168817563 168817727 -13597515 + MARNA DNA Mariner 54 225 -361 1145 83 7 0 chr6 168818590 168818735 -13596507 - AluSc SINE Alu -14 295 150 2101 102 14 7 chr6 168818867 168819161 -13596081 - AluSg SINE Alu -14 296 1 321 271 65 96 chr6 168819453 168819652 -13595590 - MIR3 SINE MIR -6 202 10 2131 127 0 3 chr6 168820347 168820647 -13594595 + AluSx SINE Alu 1 299 -13 300 244 118 16 chr6 168820788 168820915 -13594327 + MIR SINE MIR 109 248 -14 2655 200 13 14 chr6 168821677 168822036 -13593206 + L1MA9 LINE L1 4855 5214 -932 7674 47 29 0 chr6 168822036 168822908 -13592334 + MER11D LTR ERVK 1 897 0 2655 200 13 14 chr6 168822908 168823098 -13592144 + L1MA9 LINE L1 5214 5403 -743 1477 159 25 141 chr6 168823098 168823531 -13591711 + L1MA9 LINE L1 5891 6273 -39 2218 69 0 7 chr6 168823531 168823808 -13591434 - AluY SINE Alu -20 291 17 248 345 0 0 chr6 168824182 168824269 -13590973 + CT-rich Low_complexity Low_complexity 2 88 0 403 208 0 73 chr6 168825159 168825255 -13589987 + MER21B LTR ERV1 2 90 -773 2460 185 83 23 chr6 168825277 168825499 -13589743 + MER21B LTR ERV1 19 226 -637 2187 98 0 27 chr6 168825499 168825796 -13589446 + AluSq SINE Alu 1 289 -24 2460 185 83 23 chr6 168825796 168826093 -13589149 + MER21B LTR ERV1 226 569 -294 494 213 174 26 chr6 168826096 168826251 -13588991 + MER21B LTR ERV1 672 849 -14 1727 169 139 18 chr6 168827124 168827563 -13587679 - LTR54B LTR ERV1 -2 496 5 262 266 85 51 chr6 168827671 168827848 -13587394 - L1MC/D LINE L1 -1914 5894 5712 2295 177 82 3 chr6 168827853 168828425 -13586817 + LTR51 LTR ERV1 1 671 0 189 0 0 0 chr6 168828828 168828849 -13586393 + (T)n Simple_repeat Simple_repeat 1 21 0 2407 103 0 0 chr6 168828905 168829217 -13586025 + AluSx SINE Alu 1 312 0 225 0 0 0 chr6 168829681 168829706 -13585536 + (CA)n Simple_repeat Simple_repeat 2 26 0 2315 111 10 0 chr6 168831986 168832293 -13582949 + AluSx SINE Alu 1 310 -2 683 239 172 14 chr6 168833231 168833440 -13581802 + MIR SINE MIR 11 252 -10 2483 83 0 0 chr6 168833863 168834163 -13581079 - AluSx SINE Alu -9 303 4 213 39 0 0 chr6 168834666 168834692 -13580550 + (GGAGAA)n Simple_repeat Simple_repeat 3 28 0 233 246 18 0 chr6 168835374 168835431 -13579811 + MIR SINE MIR 17 74 -188 2302 231 153 16 chr6 168835590 168836349 -13578893 + L1MEc LINE L1 53 915 -5481 229 287 60 60 chr6 168836526 168836693 -13578549 + L1MC5 LINE L1 6971 7137 -824 21 36 0 0 chr6 168838164 168838192 -13577050 + AT_rich Low_complexity Low_complexity 1 28 0 263 350 86 7 chr6 168839727 168839867 -13575375 - L3 LINE CR1 -14 1563 1413 16274 117 38 8 chr6 168839945 168842290 -13572952 - Tigger1 DNA MER2_type -1 2417 1 588 263 166 5 chr6 168842333 168842550 -13572692 - MIR SINE MIR -4 258 7 459 340 78 16 chr6 168843962 168844332 -13570910 - L1MC4a LINE L1 -1963 5845 5453 1947 103 0 11 chr6 168844622 168844883 -13570359 + AluSg SINE Alu 39 296 -14 818 231 18 27 chr6 168846366 168846587 -13568655 + MER20 DNA MER1_type 1 219 0 2008 103 31 10 chr6 168846858 168847148 -13568094 - AluSq SINE Alu -17 296 1 828 129 0 68 chr6 168847308 168847455 -13567787 - FLAM_C SINE Alu -5 138 2 22 35 0 0 chr6 168847558 168847587 -13567655 + AT_rich Low_complexity Low_complexity 1 29 0 1718 204 37 23 chr6 168848361 168848792 -13566450 - L1M4 LINE L1 -3129 3017 2581 322 200 51 23 chr6 168849662 168849837 -13565405 + (TA)n Simple_repeat Simple_repeat 1 180 0 315 283 127 46 chr6 168850506 168850951 -13564291 + MLT1H LTR MaLR 65 549 0 22 70 0 0 chr6 168851104 168851147 -13564095 + AT_rich Low_complexity Low_complexity 1 43 0 1060 156 0 38 chr6 168851355 168851541 -13563701 + AluSg/x SINE Alu 124 302 -10 24 0 0 0 chr6 168851611 168851635 -13563607 + AT_rich Low_complexity Low_complexity 1 24 0 * 1377 43 0 0 chr6 168851632 168851795 -13563447 - L1PA5 LINE L1 -8 6146 5984 2058 51 0 0 chr6 168851635 168851870 -13563372 - L1PA6 LINE L1 -11 6143 5909 1904 158 0 7 chr6 168851921 168852218 -13563024 - AluJo SINE Alu -17 295 1 307 326 6 11 chr6 168852364 168852600 -13562642 + (TG)n Simple_repeat Simple_repeat 1 234 0 217 355 0 16 chr6 168852717 168852900 -13562342 + (TG)n Simple_repeat Simple_repeat 1 180 0 381 346 0 0 chr6 168852969 168853148 -13562094 + (TG)n Simple_repeat Simple_repeat 1 179 0 292 328 8 15 chr6 168853085 168853219 -13562023 + (CGTG)n Simple_repeat Simple_repeat 3 135 0 * 252 345 6 11 chr6 168853166 168853343 -13561899 + (TG)n Simple_repeat Simple_repeat 2 177 0 * 365 322 7 7 chr6 168853391 168853534 -13561708 + (TG)n Simple_repeat Simple_repeat 1 143 0 247 250 0 29 chr6 168854955 168855023 -13560219 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1468 184 10 39 chr6 168856060 168856370 -13558872 + AluJo SINE Alu 1 301 -11 1858 155 34 0 chr6 168856722 168857013 -13558229 - AluJb SINE Alu -11 301 1 22 80 0 0 chr6 168857203 168857253 -13557989 + AT_rich Low_complexity Low_complexity 1 50 0 184 276 35 0 chr6 168857423 168857481 -13557761 - L2 LINE L2 -3 3269 3210 2302 96 10 0 chr6 168857955 168858257 -13556985 - AluSq SINE Alu -8 305 1 2285 106 3 0 chr6 168858264 168858567 -13556675 - AluSc SINE Alu -5 304 1 842 219 61 98 chr6 168858919 168859298 -13555944 + MLT1A1 LTR MaLR 1 365 0 228 253 71 71 chr6 168860353 168860452 -13554790 + MLT1K LTR MaLR 490 588 0 2938 186 40 6 chr6 168861134 168861665 -13553577 + MER44D DNA MER2_type 2 605 0 678 336 12 4 chr6 168861691 168861938 -13553304 - L3 LINE CR1 -705 872 624 1212 143 5 39 chr6 168862909 168863112 -13552130 - AluJo SINE Alu -30 282 87 891 251 77 5 chr6 168863192 168863387 -13551855 - MER58A DNA MER1_type -14 210 2 472 239 99 0 chr6 168863442 168863643 -13551599 + L1MC4a LINE L1 5204 5426 -743 448 299 17 46 chr6 168863643 168863817 -13551425 - L1MC/D LINE L1 -2214 5594 5426 391 274 149 24 chr6 168863816 168864064 -13551178 + L1MC4a LINE L1 5746 6024 -1784 * 2655 115 22 0 chr6 168864333 168864689 -13550553 + THE1B LTR MaLR 1 364 0 622 243 172 67 chr6 168864692 168864793 -13550449 + MLT1H LTR MaLR 7 96 -453 1950 115 87 0 chr6 168864793 168865081 -13550161 + AluSp SINE Alu 1 313 0 622 243 172 67 chr6 168865081 168865456 -13549786 + MLT1H LTR MaLR 96 533 -16 239 248 20 40 chr6 168865532 168865633 -13549609 + L1MC4a LINE L1 4582 4680 -1466 1840 192 97 79 chr6 168865880 168866561 -13548681 + L1MC5 LINE L1 6693 7385 -576 427 277 57 61 chr6 168866755 168867051 -13548191 + L1MC5 LINE L1 7610 7904 -57 2228 85 0 53 chr6 168867266 168867585 -13547657 + AluSq SINE Alu 1 302 -11 737 266 188 44 chr6 168867680 168868222 -13547020 + L1MC4a LINE L1 5364 5983 -1825 232 323 214 5 chr6 168869306 168869498 -13545744 + MIR SINE MIR 29 260 -2 1633 259 90 48 chr6 168869708 168870296 -13544946 + L1MEc LINE L1 1201 1763 -4633 219 36 0 0 chr6 168870296 168870324 -13544918 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1633 259 90 48 chr6 168870324 168870441 -13544801 + L1MEc LINE L1 1763 1874 -4522 1718 176 20 0 chr6 168870441 168870736 -13544506 + AluJo SINE Alu 1 301 -11 1633 259 90 48 chr6 168870736 168870864 -13544378 + L1MEc LINE L1 1874 2070 -4326 200 184 0 26 chr6 168870875 168870913 -13544329 + GA-rich Low_complexity Low_complexity 2 38 0 3516 121 93 19 chr6 168871086 168871425 -13543817 + L1MB4 LINE L1 5534 5846 -334 2179 102 7 3 chr6 168871425 168871719 -13543523 + AluSx SINE Alu 1 295 -17 3516 121 93 19 chr6 168871719 168871973 -13543269 + L1MB4 LINE L1 5846 6171 -9 23 0 0 0 chr6 168872018 168872041 -13543201 + AT_rich Low_complexity Low_complexity 1 23 0 2044 138 7 7 chr6 168872044 168872340 -13542902 - AluSx SINE Alu -16 296 1 21 0 0 0 chr6 168872568 168872589 -13542653 + AT_rich Low_complexity Low_complexity 1 21 0 995 309 106 35 chr6 168872849 168873903 -13541339 + L2 LINE L2 1653 2781 -533 263 229 16 0 chr6 168873895 168873956 -13541286 + L2 LINE L2 3251 3312 -1 * 503 276 31 8 chr6 168873986 168874113 -13541129 - MER94 DNA DNA -1 133 4 931 163 25 6 chr6 168874188 168874348 -13540894 - FRAM SINE Alu -13 163 1 523 264 78 112 chr6 168874378 168874673 -13540569 + L2 LINE L2 2963 3247 -25 229 247 147 65 chr6 168875082 168875252 -13539990 - L2 LINE L2 -10 3303 3120 22 0 0 0 chr6 168875767 168875789 -13539453 + AT_rich Low_complexity Low_complexity 1 22 0 1797 184 0 0 chr6 168875911 168876204 -13539038 + AluJb SINE Alu 1 293 -19 1895 150 14 0 chr6 168876263 168876549 -13538693 - AluSx SINE Alu -22 290 1 228 250 18 0 chr6 168876639 168876695 -13538547 + MIR3 SINE MIR 120 176 -32 2225 109 3 10 chr6 168877903 168878214 -13537028 + AluSq SINE Alu 1 309 -4 1064 94 94 0 chr6 168878253 168878402 -13536840 + LTR8 LTR ERV1 1 163 -528 2237 121 0 3 chr6 168878419 168878726 -13536516 + AluSx SINE Alu 1 306 -6 3103 85 62 2 chr6 168878731 168879165 -13536077 + LTR8 LTR ERV1 231 690 -1 1798 163 0 0 chr6 168879165 168879447 -13535795 + AluSx SINE Alu 27 308 -4 2350 129 124 5 chr6 168879691 168880078 -13535164 + Tigger2a DNA MER2_type 1 433 -1 2896 171 50 95 chr6 168880191 168880915 -13534327 + LTR8 LTR ERV1 1 691 0 752 213 104 31 chr6 168881161 168881448 -13533794 + L1MC5 LINE L1 7618 7925 -36 1474 181 178 24 chr6 168881508 168881878 -13533364 - MER54A LTR ERVL 0 901 475 467 88 26 44 chr6 168882794 168882907 -13532335 + (GAAA)n Simple_repeat Simple_repeat 3 113 0 223 269 90 13 chr6 168883227 168883305 -13531937 + L2 LINE L2 2966 3049 -264 325 225 154 0 chr6 168883777 168883880 -13531362 - MIR SINE MIR -66 142 34 22 0 0 0 chr6 168884979 168885001 -13530241 + AT_rich Low_complexity Low_complexity 1 22 0 1859 172 28 0 chr6 168885001 168885291 -13529951 + AluJb SINE Alu 1 298 -14 762 124 129 84 chr6 168886349 168886423 -13528819 + MER5A DNA MER1_type 2 71 -118 2449 72 7 3 chr6 168886423 168886729 -13528513 + AluY SINE Alu 1 307 -4 762 124 129 84 chr6 168886729 168886832 -13528410 + MER5A DNA MER1_type 71 187 -2 1559 153 25 11 chr6 168887086 168887180 -13528062 + AluJb SINE Alu 23 114 -198 225 0 0 0 chr6 168887180 168887205 -13528037 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1559 153 25 11 chr6 168887205 168887385 -13527857 + AluJb SINE Alu 114 301 -11 911 191 0 35 chr6 168887387 168887422 -13527820 + AluJb SINE Alu 137 172 -140 2010 125 104 17 chr6 168887422 168887767 -13527475 - THE1C LTR MaLR 0 375 1 911 191 0 35 chr6 168887767 168887904 -13527338 + AluJb SINE Alu 172 303 -9 2080 147 0 0 chr6 168888001 168888293 -13526949 + AluSx SINE Alu 1 292 -20 1004 152 14 109 chr6 168888458 168888668 -13526574 + LTR45B LTR ERV1 3 192 -297 1627 161 3 31 chr6 168888681 168888967 -13526275 + AluJo SINE Alu 23 300 -12 997 158 5 16 chr6 168888974 168889158 -13526084 + AluJb SINE Alu 131 312 0 1279 169 49 23 chr6 168889166 168889469 -13525773 + LTR45B LTR ERV1 182 783 0 21 36 0 0 chr6 168890001 168890029 -13525213 + AT_rich Low_complexity Low_complexity 1 28 0 2641 84 53 8 chr6 168890452 168890811 -13524431 + THE1C LTR MaLR 1 375 0 258 241 50 101 chr6 168891467 168891666 -13523576 + L1MEd LINE L1 12 200 -5919 1040 283 107 36 chr6 168891891 168892546 -13522696 + L1MEd LINE L1 505 1229 -4900 778 194 161 0 chr6 168892546 168892726 -13522516 - MER3 DNA MER1_type 0 209 1 1040 283 107 36 chr6 168892726 168892995 -13522247 + L1MEd LINE L1 1229 1477 -4652 421 231 45 19 chr6 168893524 168893680 -13521562 + L1MEd LINE L1 2275 2434 -3695 492 252 103 35 chr6 168893745 168894055 -13521187 + L1MEd LINE L1 2553 2883 -3246 191 323 130 57 chr6 168894341 168894533 -13520709 - L2 LINE L2 -59 3213 3008 1690 161 69 0 chr6 168894538 168894812 -13520430 + AluJb SINE Alu 1 293 -19 555 95 64 28 chr6 168895693 168896543 -13518699 + (TA)n Simple_repeat Simple_repeat 1 880 0 2448 66 7 7 chr6 168896775 168897080 -13518162 - AluY SINE Alu -6 305 1 2300 71 0 14 chr6 168898040 168898337 -13516905 - AluSx SINE Alu -19 293 1 205 169 17 34 chr6 168899753 168899812 -13515430 + (CCCCG)n Simple_repeat Simple_repeat 3 60 0 313 278 149 85 chr6 168899994 168900238 -13515004 + L1M2 LINE L1 421 705 -6144 210 37 0 0 chr6 168900238 168900265 -13514977 + (CCG)n Simple_repeat Simple_repeat 1 27 0 313 278 149 85 chr6 168900265 168900444 -13514798 + L1M2 LINE L1 705 871 -5978 297 219 158 48 chr6 168901253 168901399 -13513843 - MIR SINE MIR -8 254 93 468 260 138 30 chr6 168901399 168901711 -13513531 + L1ME4a LINE L1 5575 5834 -287 335 194 16 0 chr6 168901832 168901894 -13513348 - MIR SINE MIR -157 105 43 543 185 0 0 chr6 168902165 168902246 -13512996 + FLAM_A SINE Alu 40 120 -22 2417 63 23 0 chr6 168902326 168902627 -13512615 + AluSc SINE Alu 1 308 -1 1872 118 0 57 chr6 168902840 168903137 -13512105 - AluSx SINE Alu -30 282 3 321 202 83 113 chr6 168903956 168904124 -13511118 - L2 LINE L2 -54 3259 3097 3380 81 30 7 chr6 168904788 168905174 -13510068 + MLT2A1 LTR ERVL 1 377 -67 195 42 0 0 chr6 168905174 168905198 -13510044 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 228 35 0 0 chr6 168905197 168905226 -13510016 + (TG)n Simple_repeat Simple_repeat 2 30 0 3380 81 30 7 chr6 168905198 168905273 -13509969 + MLT2A1 LTR ERVL 377 444 0 778 152 0 0 chr6 168905287 168905399 -13509843 - AluJb SINE Alu -4 308 197 234 0 0 0 chr6 168905400 168905426 -13509816 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1933 108 3 61 chr6 168905426 168905723 -13509519 - AluSg SINE Alu -30 280 1 246 292 35 44 chr6 168905966 168906079 -13509163 + MIR SINE MIR 13 124 -138 2345 142 22 6 chr6 168906088 168906447 -13508795 - MLT1A1 LTR MaLR 0 365 1 3113 39 30 0 chr6 168907261 168907623 -13507619 - L1PA7 LINE L1 0 6154 5782 1744 154 27 24 chr6 168907789 168908081 -13507161 + AluJo SINE Alu 1 293 -19 825 188 85 6 chr6 168908620 168908785 -13506457 - MER45A DNA AcHobo 0 178 1 1499 177 90 17 chr6 168909250 168909688 -13505554 + LTR54 LTR ERV1 1 496 -2 433 257 73 65 chr6 168909690 168909935 -13505307 + MER57-int LTR ERV1 1900 2146 -4185 325 184 0 126 chr6 168909943 168910030 -13505212 + MER57-int LTR ERV1 2106 2181 -4150 346 248 104 24 chr6 168910067 168910192 -13505050 + MER57-int LTR ERV1 292 426 -7111 264 346 74 0 chr6 168910220 168910477 -13504765 - L1M4 LINE L1 -1128 5018 4737 566 261 90 30 chr6 168910489 168910840 -13504402 - MLT1J2 LTR MaLR -23 427 1 1477 238 80 96 chr6 168910977 168911528 -13503714 + MLT1F1 LTR MaLR 1 567 0 1706 173 48 7 chr6 168912220 168912515 -13502727 - AluJo SINE Alu -5 307 1 262 254 0 45 chr6 168912765 168912832 -13502410 - MLT1L LTR MaLR -107 508 445 3275 231 80 19 chr6 168912839 168914181 -13501061 - L1ME1 LINE L1 -5 6144 4720 803 275 13 8 chr6 168914197 168914433 -13500809 - L1ME1 LINE L1 -2620 3509 3273 966 251 59 11 chr6 168914494 168914765 -13500477 - LTR41 LTR ERVL -473 300 17 365 241 128 14 chr6 168914817 168914958 -13500284 - L1ME1 LINE L1 -4995 1124 968 907 313 89 63 chr6 168914972 168915834 -13499408 - L1ME1 LINE L1 -5190 929 45 292 296 0 0 chr6 168917386 168917457 -13497785 + L2 LINE L2 3243 3313 0 1675 149 60 3 chr6 168918497 168918779 -13496463 + MLT2D LTR ERVL 1 298 -116 255 197 7 162 chr6 168919052 168919142 -13496100 + LTR67 LTR ERVL 438 500 -57 2152 126 7 3 chr6 168919142 168919444 -13495798 + AluSx SINE Alu 1 303 -9 255 197 7 162 chr6 168919444 168919495 -13495747 + LTR67 LTR ERVL 500 557 0 227 278 28 0 chr6 168920601 168920673 -13494569 - MLT1K LTR MaLR 0 588 515 363 333 20 27 chr6 168920848 168920998 -13494244 - MIR SINE MIR -83 179 31 186 219 0 0 chr6 168921071 168921103 -13494139 - L3 LINE CR1 -106 1471 1440 223 335 110 17 chr6 168921212 168921385 -13493857 - L3 LINE CR1 -208 1369 1181 2149 118 3 10 chr6 168921550 168921854 -13493388 - AluJb SINE Alu -9 303 2 662 182 193 5 chr6 168921863 168922050 -13493192 - MER20B DNA MER1_type -46 737 516 1512 173 13 70 chr6 168922631 168922944 -13492298 - AluJb SINE Alu -17 295 1 1655 228 28 48 chr6 168923069 168923407 -13491835 - MER20B DNA MER1_type -39 180 152 3007 68 3 3 chr6 168923407 168923762 -13491480 + THE1A LTR MaLR 1 355 0 1655 228 28 48 chr6 168923762 168923912 -13491330 - MER20B DNA MER1_type -67 152 1 1928 110 45 71 chr6 168924013 168924394 -13490848 + THE1C LTR MaLR 5 375 0 685 118 109 0 chr6 168924478 168924597 -13490645 - L1MB3 LINE L1 -8 6175 6044 5562 202 38 50 chr6 168924633 168926007 -13489235 - L1MC4 LINE L1 -150 7892 6536 624 219 27 20 chr6 168926138 168926284 -13488958 - MIR SINE MIR -11 251 105 30 27 0 0 chr6 168926330 168926367 -13488875 + AT_rich Low_complexity Low_complexity 1 37 0 262 319 14 0 chr6 168926516 168926585 -13488657 + L2 LINE L2 3244 3313 0 507 216 24 16 chr6 168926629 168926754 -13488488 + MLT1J2 LTR MaLR 19 144 -306 21 0 0 0 chr6 168927339 168927360 -13487882 + AT_rich Low_complexity Low_complexity 1 21 0 623 294 57 18 chr6 168927558 168927840 -13487402 - L1MC5 LINE L1 -60 7901 7609 2166 115 0 0 chr6 168927881 168928168 -13487074 - AluSx SINE Alu -25 287 1 23 0 0 0 chr6 168928695 168928718 -13486524 + AT_rich Low_complexity Low_complexity 1 23 0 3003 88 0 3 chr6 168928889 168929254 -13485988 - THE1B LTR MaLR 0 364 1 386 315 105 0 chr6 168929364 168929545 -13485697 + MARNA DNA Mariner 49 248 -338 2052 123 7 13 chr6 168930052 168930352 -13484890 + AluSx SINE Alu 1 298 -14 1526 139 66 26 chr6 168930556 168930858 -13484384 + L1MA8 LINE L1 5978 6291 0 2201 93 7 0 chr6 168930863 168931153 -13484089 + AluSc SINE Alu 1 292 -17 354 143 0 0 chr6 168931153 168931216 -13484026 + (GGGA)n Simple_repeat Simple_repeat 1 63 0 21 57 0 0 chr6 168931217 168931252 -13483990 + AT_rich Low_complexity Low_complexity 1 35 0 316 254 0 0 chr6 168931783 168931850 -13483392 - L2 LINE L2 0 3313 3247 1337 239 123 30 chr6 168933032 168933497 -13481745 + MLT1J LTR MaLR 1 508 -3 909 216 88 18 chr6 168933525 168933752 -13481490 - MIR SINE MIR 0 262 20 1062 206 29 0 chr6 168933776 168933980 -13481262 + MER58A DNA MER1_type 15 224 0 21 0 0 0 chr6 168934014 168934035 -13481207 + AT_rich Low_complexity Low_complexity 1 21 0 1653 65 0 0 chr6 168934091 168934290 -13480952 - AluY SINE Alu -14 297 99 746 308 28 4 chr6 168934290 168934537 -13480705 - MIR SINE MIR -6 256 4 552 266 92 16 chr6 168935133 168935317 -13479925 + MIR SINE MIR 65 262 0 191 288 30 45 chr6 168935368 168935434 -13479808 - L2 LINE L2 -5 3267 3203 35 71 0 0 chr6 168935548 168935618 -13479624 + AT_rich Low_complexity Low_complexity 1 70 0 242 97 52 6 chr6 168935745 168935797 -13479445 - MLT2B1 LTR ERVL 0 554 464 222 150 0 0 chr6 168935805 168935845 -13479397 + (CA)n Simple_repeat Simple_repeat 1 40 0 1497 210 36 89 chr6 168935881 168936353 -13478889 - MLT2B1 LTR ERVL -56 464 18 1454 183 23 17 chr6 168936526 168936871 -13478371 - L1MEc LINE L1 -1665 4415 4069 1865 143 0 21 chr6 168936950 168937237 -13478005 + AluJo SINE Alu 1 281 -31 291 356 0 0 chr6 168937447 168937537 -13477705 - LTR16B LTR ERVL -374 90 1 5416 236 86 35 chr6 168937541 168938030 -13477212 - L1MEc LINE L1 -2019 4061 3598 2439 89 0 0 chr6 168938030 168938334 -13476908 - AluSg SINE Alu -6 304 1 5416 236 86 35 chr6 168938334 168938634 -13476608 - L1MEc LINE L1 -2482 3598 3315 2325 101 0 0 chr6 168938634 168938932 -13476310 + AluSx SINE Alu 1 298 -14 5416 236 86 35 chr6 168938932 168939356 -13475886 - L1MEc LINE L1 -2765 3315 2914 2321 95 7 0 chr6 168939356 168939660 -13475582 + AluSg SINE Alu 1 306 -4 5416 236 86 35 chr6 168939660 168940392 -13474850 - L1MEc LINE L1 -3166 2914 2001 2153 110 10 0 chr6 168940392 168940692 -13474550 - AluSg1 SINE Alu -6 303 1 5416 236 86 35 chr6 168940692 168940879 -13474363 - L1MEc LINE L1 -4079 2001 1825 868 242 105 68 chr6 168940886 168941445 -13473797 - MER34B LTR ERV1 0 542 1 267 103 0 0 chr6 168941448 168941487 -13473755 + (CA)n Simple_repeat Simple_repeat 1 39 0 281 236 41 0 chr6 168941614 168941690 -13473552 - L1ME LINE L1 -5890 180 101 503 69 14 0 chr6 168942522 168942594 -13472648 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 643 160 22 72 chr6 168942594 168942775 -13472467 + MER53 DNA DNA 18 189 0 199 268 92 73 chr6 168943018 168943182 -13472060 - MIR SINE MIR -52 210 44 251 325 81 38 chr6 168943570 168943730 -13471512 - MIR SINE MIR -50 212 46 325 260 23 63 chr6 168943975 168944117 -13471125 - MIR SINE MIR -62 146 37 257 339 213 0 chr6 168944548 168944727 -13470515 + MIR3 SINE MIR 46 261 -1 1369 225 52 36 chr6 168944942 168945328 -13469914 + MLT1C LTR MaLR 76 467 0 2195 74 42 3 chr6 168945913 168946197 -13469045 - AluYa5 SINE Alu -16 295 1 374 324 67 21 chr6 168946284 168946525 -13468717 - MIR SINE MIR -7 255 2 340 278 35 29 chr6 168947371 168947544 -13467698 + L2 LINE L2 1278 1451 -1863 2155 117 7 7 chr6 168947933 168948232 -13467010 - AluSx SINE Alu -13 299 1 252 281 11 11 chr6 168949003 168949092 -13466150 + C-rich Low_complexity Low_complexity 5 93 0 339 297 100 63 chr6 168949315 168949905 -13465337 + L2 LINE L2 2254 2865 -449 1495 240 56 33 chr6 168950599 168951049 -13464193 - MLT1C LTR MaLR 0 467 8 2201 107 3 0 chr6 168951308 168951606 -13463636 + AluSx SINE Alu 1 299 -13 203 331 156 26 chr6 168951747 168951965 -13463277 - MIR SINE MIR -8 254 17 2299 55 0 45 chr6 168952494 168952804 -13462438 - AluY SINE Alu -15 296 1 588 241 127 0 chr6 168953226 168953384 -13461858 - MER45A DNA AcHobo 0 178 1 244 324 57 50 chr6 168953605 168953904 -13461338 + L2 LINE L2 2812 3112 -160 183 80 0 0 chr6 168954083 168954108 -13461134 + (CTG)n Simple_repeat Simple_repeat 3 27 0 2112 95 0 0 chr6 168954223 168954544 -13460698 - AluSx SINE Alu 0 321 1 504 250 18 0 chr6 168955198 168955310 -13459932 + MER81 DNA DNA 1 114 0 336 324 86 0 chr6 168955850 168955955 -13459287 - MIR SINE MIR -53 209 96 2351 58 3 3 chr6 168957648 168957957 -13457285 + AluY SINE Alu 1 309 -2 573 93 0 0 chr6 168958231 168958306 -13456936 - MADE1 DNA Mariner 0 80 6 1771 146 48 19 chr6 168960242 168960558 -13454684 + MER34B LTR ERV1 3 327 -238 25 0 0 0 chr6 168960558 168960583 -13454659 + AT_rich Low_complexity Low_complexity 1 25 0 1219 137 7 105 chr6 168960650 168960927 -13454315 + MER34B LTR ERV1 316 565 0 322 289 82 37 chr6 168961574 168961709 -13453533 - MIR SINE MIR -102 160 20 479 163 41 0 chr6 168962117 168962215 -13453027 - MER97b DNA MER1_type? -892 161 60 1968 170 29 71 chr6 168962917 168963134 -13452108 + MER63B DNA MER1_type 2 227 -835 1897 115 3 21 chr6 168963134 168963459 -13451783 + AluSc SINE Alu 3 322 0 1968 170 29 71 chr6 168963459 168963583 -13451659 + MER63B DNA MER1_type 227 325 -737 1781 163 13 0 chr6 168963583 168963890 -13451352 - AluJb SINE Alu -1 311 1 1968 170 29 71 chr6 168963890 168963996 -13451246 + MER63B DNA MER1_type 325 434 -2 291 258 0 0 chr6 168964109 168964171 -13451071 + L2 LINE L2 1901 1962 -1352 276 375 0 0 chr6 168964324 168964452 -13450790 + L2 LINE L2 2221 2348 -966 292 301 97 0 chr6 168964494 168964607 -13450635 - L2 LINE L2 -3 3310 3187 205 386 52 36 chr6 168964608 168965054 -13450188 + L2 LINE L2 2413 2865 -449 1256 163 16 25 chr6 168965056 168965348 -13449894 - AluJo SINE Alu 0 356 67 251 292 124 18 chr6 168965544 168965657 -13449585 + MER91B DNA MER1_type 1 125 -65 413 296 169 14 chr6 168965692 168965905 -13449337 + L2 LINE L2 3025 3270 -2 1832 140 3 23 chr6 168966872 168967172 -13448070 - AluJb SINE Alu -18 294 1 234 83 0 104 chr6 168967314 168967362 -13447880 - LTR8 LTR ERV1 -171 520 478 4490 63 5 2 chr6 168967992 168968544 -13446698 + MER41A LTR ERV1 1 554 0 901 251 127 64 chr6 168968804 168968880 -13446362 + MLT1L LTR MaLR 43 113 -502 5298 73 18 4 chr6 168968880 168969562 -13445680 + LTR8 LTR ERV1 1 691 0 901 251 127 64 chr6 168969562 168969956 -13445286 + MLT1L LTR MaLR 113 543 -72 5073 156 41 28 chr6 168970085 168970121 -13445121 - L1MB1 LINE L1 -5 6163 6129 6033 125 14 13 chr6 168970121 168971089 -13444153 + LTR5 LTR ERVK 1 969 0 2001 104 0 0 chr6 168971099 168971367 -13443875 - AluSx SINE Alu -17 295 28 5073 156 41 28 chr6 168971367 168971892 -13443350 - L1MB1 LINE L1 -47 6121 5604 2564 85 11 8 chr6 168971892 168972246 -13442996 + THE1A LTR MaLR 1 355 0 5073 156 41 28 chr6 168972246 168973446 -13441796 - L1MB1 LINE L1 -564 5604 4358 2145 99 27 0 chr6 168973491 168973784 -13441458 + AluSx SINE Alu 1 301 -11 698 292 46 0 chr6 168973816 168974035 -13441207 - MIR SINE MIR 0 262 34 203 297 72 54 chr6 168974232 168974343 -13440899 + MIR SINE MIR 100 212 -50 2106 123 3 0 chr6 168974552 168974853 -13440389 - AluSg SINE Alu -8 302 1 878 261 46 4 chr6 168975238 168975476 -13439766 + MIR SINE MIR 15 262 0 2214 146 9 3 chr6 168976119 168976454 -13438788 + MER1B DNA MER1_type 1 337 0 244 200 0 0 chr6 168976509 168976554 -13438688 - Alu SINE Alu -6 296 252 424 305 31 16 chr6 168978065 168978193 -13437049 - MIR SINE MIR -113 149 20 2233 100 0 6 chr6 168978260 168978571 -13436671 + AluSc SINE Alu 1 309 0 219 193 53 35 chr6 168979014 168979071 -13436171 + MIR SINE MIR 18 75 -133 2068 128 0 7 chr6 168979265 168979570 -13435672 - AluSx SINE Alu -9 303 1 863 222 11 5 chr6 168979611 168979796 -13435446 + L1M4 LINE L1 16 201 -6341 183 42 0 0 chr6 168979863 168979887 -13435355 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 329 242 18 16 chr6 168980689 168980774 -13434468 + MER5A DNA MER1_type 92 189 0 213 320 148 8 chr6 168980811 168980939 -13434303 - L3b LINE CR1 -242 1341 1196 421 272 51 32 chr6 168981763 168981921 -13433321 + MER5A DNA MER1_type 1 161 -28 1955 147 3 3 chr6 168981926 168982238 -13433004 - AluSx SINE Alu 0 312 1 188 283 22 0 chr6 168982238 168982284 -13432958 + MER5A DNA MER1_type 143 189 0 476 302 121 7 chr6 168982330 168982479 -13432763 - MIR SINE MIR -77 185 20 371 280 91 16 chr6 168982792 168982978 -13432264 + MLT1L LTR MaLR 89 288 -327 238 253 89 13 chr6 168983021 168983100 -13432142 - MER91C DNA MER1_type -37 103 19 198 0 0 0 chr6 168983187 168983209 -13432033 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7314 49 3 0 chr6 168983209 168984677 -13430565 - L1PA7 LINE L1 -18 6136 4668 18266 78 10 2 chr6 168984677 168987164 -13428078 + L1PA7 LINE L1 2163 4668 -1478 1847 125 27 3 chr6 168987322 168987617 -13427625 - AluSx SINE Alu -10 302 1 970 105 8 0 chr6 168987761 168987894 -13427348 - AluSq/x SINE Alu -178 134 1 1466 143 81 11 chr6 168988040 168988313 -13426929 - AluSx SINE Alu -20 292 1 689 261 96 64 chr6 168988455 168988895 -13426347 - MER34B LTR ERV1 0 565 112 342 0 0 0 chr6 168989046 168989084 -13426158 + (CA)n Simple_repeat Simple_repeat 1 38 0 219 212 0 30 chr6 168989132 168989198 -13426044 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 24 32 0 0 chr6 168989227 168989258 -13425984 + AT_rich Low_complexity Low_complexity 1 31 0 2229 92 0 3 chr6 168989802 168990105 -13425137 - AluY SINE Alu -9 302 1 2450 165 10 57 chr6 168990251 168990459 -13424783 + L1MA9 LINE L1 5829 6045 -267 650 219 0 0 chr6 168990459 168990603 -13424639 + FLAM_C SINE Alu 5 148 0 2450 165 10 57 chr6 168990603 168990901 -13424341 + L1MA9 LINE L1 6045 6312 0 477 147 0 0 chr6 168991894 168991989 -13423253 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 1887 129 7 4 chr6 168992012 168992320 -13422922 + AluSg SINE Alu 1 309 0 2068 123 3 0 chr6 168992364 168992664 -13422578 + AluSx SINE Alu 1 301 -11 2288 81 7 7 chr6 168992751 168993061 -13422181 - AluSx SINE Alu -2 310 1 29 0 0 0 chr6 168993070 168993099 -13422143 + AT_rich Low_complexity Low_complexity 1 29 0 1288 214 38 41 chr6 168993099 168993444 -13421798 - L1MB8 LINE L1 -6 6172 5829 569 128 35 0 chr6 168993544 168993630 -13421612 - AluS SINE Alu -223 90 2 2126 91 6 25 chr6 168994167 168994485 -13420757 - AluSx SINE Alu 0 312 1 940 256 52 110 chr6 168995450 168996158 -13419084 + PABL_B LTR ERV1 1 667 0 2388 226 69 16 chr6 168996501 168997124 -13418118 + L1MEc LINE L1 518 1173 -5223 890 275 70 64 chr6 168997381 168997821 -13417421 - LTR1B LTR ERV1 -328 498 56 833 297 48 27 chr6 168997848 168998323 -13416919 + L1MEc LINE L1 1212 1696 -4700 432 228 11 11 chr6 168998332 168998424 -13416818 + MER2 DNA MER2_type 6 97 -248 * 3060 127 30 14 chr6 168998422 168998918 -13416324 - LTR24B LTR ERV1 -8 568 65 475 118 0 0 chr6 168998906 168998974 -13416268 - LTR23 LTR ERV1 -358 79 12 * 1432 239 107 16 chr6 168999000 168999448 -13415794 + MER21B LTR ERV1 324 812 -51 207 0 0 0 chr6 169000215 169000238 -13415004 + (TG)n Simple_repeat Simple_repeat 2 24 0 2208 99 0 0 chr6 169000290 169000582 -13414660 - AluSx SINE Alu -20 292 1 238 219 68 27 chr6 169001431 169001504 -13413738 - L2 LINE L2 -24 3289 3214 290 308 60 8 chr6 169001727 169001844 -13413398 - L2 LINE L2 -537 2777 2655 518 203 22 80 chr6 169001943 169002008 -13413234 - MER94 DNA DNA 0 134 80 2072 145 0 0 chr6 169002008 169002304 -13412938 - AluSx SINE Alu -16 296 1 518 203 22 80 chr6 169002304 169002376 -13412866 - MER94 DNA DNA -54 80 5 516 167 0 0 chr6 169002389 169002473 -13412769 - FLAM_A SINE Alu -13 129 46 2106 108 3 57 chr6 169003237 169003552 -13411690 - AluSx SINE Alu -14 298 1 3119 160 58 8 chr6 169004874 169005492 -13409750 + L1PB4 LINE L1 5505 6153 -3 188 279 0 33 chr6 169005632 169005693 -13409549 - L2 LINE L2 -9 3263 3205 1613 156 76 3 chr6 169005952 169006240 -13409002 + AluJo SINE Alu 1 309 -3 208 307 216 6 chr6 169006804 169006980 -13408262 + MIR SINE MIR 42 254 -8 1815 139 9 86 chr6 169007700 169008038 -13407204 - AluJb SINE Alu 0 312 1 2231 123 3 3 chr6 169008232 169008542 -13406700 - AluSx SINE Alu -2 310 1 427 320 97 0 chr6 169008600 169008775 -13406467 - MER117 DNA MER1_type -2 195 4 252 298 127 28 chr6 169010379 169010560 -13404682 - MIR SINE MIR 0 262 64 410 66 49 0 chr6 169010566 169010627 -13404615 + U2 snRNA snRNA 4 67 -121 2546 192 20 63 chr6 169010638 169011238 -13404004 - LTR9 LTR ERV1 -38 574 1 631 169 25 0 chr6 169011238 169011350 -13403892 + U2 snRNA snRNA 63 177 -11 324 376 0 8 chr6 169012046 169012163 -13403079 - MIR SINE MIR -130 132 17 476 174 110 9 chr6 169012427 169012536 -13402706 + MLT1B LTR MaLR 5 124 -266 2158 116 0 7 chr6 169012536 169012820 -13402422 + AluSx SINE Alu 1 282 -30 288 0 0 0 chr6 169012833 169012865 -13402377 + (CA)n Simple_repeat Simple_repeat 1 32 0 4179 72 2 0 chr6 169013020 169013573 -13401669 - MER41A LTR ERV1 0 554 1 1211 202 68 63 chr6 169013593 169013762 -13401480 + MLT1B LTR MaLR 5 172 -218 2339 117 0 0 chr6 169013762 169014062 -13401180 + AluSc SINE Alu 1 300 -9 1211 202 68 63 chr6 169014062 169014084 -13401158 + MLT1B LTR MaLR 172 192 -198 219 36 0 0 chr6 169014084 169014112 -13401130 + (TC)n Simple_repeat Simple_repeat 2 29 0 1211 202 68 63 chr6 169014112 169014301 -13400941 + MLT1B LTR MaLR 192 388 -2 4079 139 16 32 chr6 169014540 169015279 -13399963 + LTR8A LTR ERV1 1 727 0 2278 206 93 57 chr6 169015410 169016110 -13399132 + MER50 LTR ERV1 10 734 0 1512 107 18 5 chr6 169016437 169016661 -13398581 + MER4A LTR ERV1 438 664 0 2554 73 8 19 chr6 169016720 169017217 -13398025 + LTR7 LTR ERV1 1 448 -2 16514 105 22 23 chr6 169017219 169020319 -13394923 + HERVH LTR ERV1 1 2987 -4726 834 155 20 0 chr6 169020313 169020461 -13394781 + HERVH LTR ERV1 3140 3290 -4423 * 3425 91 4 4 chr6 169020460 169020953 -13394289 + HERVH LTR ERV1 3500 3992 -3721 * 4387 137 1 3 chr6 169020945 169021618 -13393624 + HERVH LTR ERV1 4478 5149 -2564 1323 134 18 5 chr6 169021619 169021836 -13393406 + HERVH LTR ERV1 5600 5819 -1894 * 2472 88 45 3 chr6 169021834 169022210 -13393032 + HERVH LTR ERV1 7322 7713 0 3441 53 0 7 chr6 169022210 169022661 -13392581 + LTR7 LTR ERV1 1 448 -2 1348 246 83 5 chr6 169023080 169023478 -13391764 + MER74A LTR ERVL 25 453 -105 226 49 122 0 chr6 169023479 169023520 -13391722 + MER4D LTR ERV1 1 46 -857 902 124 25 0 chr6 169023520 169023641 -13391601 - FLAM_C SINE Alu -19 124 1 3132 128 29 75 chr6 169023641 169023928 -13391314 + MER4D LTR ERV1 320 619 -284 3297 150 19 86 chr6 169023928 169024669 -13390573 + LTR8 LTR ERV1 1 691 0 3132 128 29 75 chr6 169024669 169024938 -13390304 + MER4D LTR ERV1 619 848 -55 2444 86 0 0 chr6 169024938 169025240 -13390002 - AluY SINE Alu -9 302 1 3132 128 29 75 chr6 169025240 169025294 -13389948 + MER4D LTR ERV1 848 903 0 244 229 29 14 chr6 169025304 169025374 -13389868 + MER74A LTR ERVL 460 530 -28 312 288 42 110 chr6 169025768 169026077 -13389165 - L2 LINE L2 0 3272 2985 572 250 64 87 chr6 169026171 169026559 -13388683 - MLT1H1 LTR MaLR 0 555 160 832 216 68 25 chr6 169026559 169026795 -13388447 - PABL_B LTR ERV1 0 667 422 2215 122 0 0 chr6 169026827 169027130 -13388112 - AluSx SINE Alu -9 303 1 310 311 47 90 chr6 169027157 169027434 -13387808 - PABL_B LTR ERV1 -401 266 2 272 189 19 0 chr6 169027434 169027480 -13387762 - MLT1H1 LTR MaLR -389 160 114 1030 301 58 44 chr6 169027868 169028387 -13386855 + MLT1K LTR MaLR 59 584 -4 5015 138 36 3 chr6 169029458 169030318 -13384924 - L1MC1 LINE L1 0 6333 5446 220 252 142 31 chr6 169030439 169030566 -13384676 - L2 LINE L2 0 3313 3173 209 242 22 56 chr6 169030930 169031108 -13384134 + GA-rich Low_complexity Low_complexity 1 172 0 284 163 0 124 chr6 169031347 169031549 -13383693 + GA-rich Low_complexity Low_complexity 4 180 0 1822 160 28 0 chr6 169031815 169032097 -13383145 + AluJb SINE Alu 1 290 -22 198 0 0 0 chr6 169032441 169032463 -13382779 + (T)n Simple_repeat Simple_repeat 1 22 0 486 305 42 38 chr6 169032750 169032986 -13382256 - L2 LINE L2 -1 3312 3076 815 206 33 5 chr6 169034852 169035036 -13380206 + MER5A DNA MER1_type 1 189 0 378 171 0 0 chr6 169035646 169035716 -13379526 + CT-rich Low_complexity Low_complexity 3 72 0 1930 93 0 48 chr6 169035718 169035891 -13379351 - AluSc SINE Alu -16 293 136 2639 52 0 7 chr6 169035891 169036201 -13379041 - AluY SINE Alu -3 308 1 1930 93 0 48 chr6 169036201 169036297 -13378945 - AluSc SINE Alu -173 136 37 1468 275 83 13 chr6 169036856 169037383 -13377859 - MER77 LTR ERV1 -3 602 58 598 277 138 3 chr6 169037415 169037697 -13377545 + MER5C DNA MER1_type 5 324 0 223 359 39 0 chr6 169037697 169037824 -13377418 + MIR3 SINE MIR 47 178 -30 923 135 0 0 chr6 169039432 169039565 -13375677 + AluSp/q SINE Alu 162 294 -19 2255 115 3 19 chr6 169039616 169039928 -13375314 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr6 169040830 169040855 -13374387 + AT_rich Low_complexity Low_complexity 1 25 0 2294 121 0 3 chr6 169040912 169041218 -13374024 - AluSx SINE Alu -7 305 1 612 145 51 0 chr6 169041826 169041943 -13373299 + L1MB7 LINE L1 6043 6165 -19 216 327 30 50 chr6 169042674 169042775 -13372467 - MIR SINE MIR -68 140 42 272 280 58 78 chr6 169044099 169044342 -13370900 + MLT1J LTR MaLR 28 265 -246 506 258 46 71 chr6 169044470 169044710 -13370532 + MLT1J LTR MaLR 260 493 -18 21 0 0 0 chr6 169045295 169045316 -13369926 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 169045901 169045922 -13369320 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 169049618 169049639 -13365603 + AT_rich Low_complexity Low_complexity 1 21 0 221 268 0 37 chr6 169050469 169050551 -13364691 + G-rich Low_complexity Low_complexity 3 81 0 2128 217 38 8 chr6 169050820 169051332 -13363910 + L1MB3 LINE L1 5661 6183 0 291 346 11 28 chr6 169051784 169051914 -13363328 - MIR SINE MIR -27 181 47 201 120 200 0 chr6 169052277 169052327 -13362915 + L3b LINE CR1 1206 1265 -318 2013 141 0 3 chr6 169052568 169052851 -13362391 + AluSx SINE Alu 1 282 -30 181 0 0 0 chr6 169052851 169052871 -13362371 + (TAAA)n Simple_repeat Simple_repeat 1 168 0 425 217 161 7 chr6 169054097 169054240 -13361002 + MER69A DNA AcHobo 2 166 -11 2206 109 0 50 chr6 169054439 169054761 -13360481 - AluSx SINE Alu -6 306 1 281 252 18 45 chr6 169055624 169055735 -13359507 + CT-rich Low_complexity Low_complexity 2 109 0 276 132 0 19 chr6 169056046 169056099 -13359143 - MER116 DNA Mariner 0 80 29 460 322 53 19 chr6 169057989 169058253 -13356989 + L1MEc LINE L1 843 1115 -6023 639 251 33 5 chr6 169058713 169059036 -13356206 + L1MEc LINE L1 1331 1914 -5046 447 279 178 20 chr6 169059156 169059353 -13355889 + MIR SINE MIR 4 231 -31 289 308 51 0 chr6 169059814 169059931 -13355311 - L3 LINE CR1 -180 1397 1275 2215 124 0 0 chr6 169060681 169060987 -13354255 + AluSx SINE Alu 1 306 -6 1231 126 6 0 chr6 169061167 169061341 -13353901 + AluSg/x SINE Alu 128 302 -10 500 267 21 59 chr6 169061393 169061580 -13353662 - MIR SINE MIR -70 192 13 260 259 129 12 chr6 169062126 169062211 -13353031 + L2 LINE L2 3019 3113 -159 254 302 31 10 chr6 169062404 169062500 -13352742 - MER5B DNA MER1_type 0 178 81 2406 106 0 3 chr6 169062670 169062982 -13352260 + AluSx SINE Alu 1 311 -1 447 258 121 0 chr6 169063004 169063128 -13352114 + MIR SINE MIR 67 205 -57 1798 234 29 12 chr6 169064040 169064519 -13350723 + L1M4 LINE L1 3337 3823 -2323 600 261 30 35 chr6 169064792 169064995 -13350247 - MIR3 SINE MIR 0 208 7 831 248 30 5 chr6 169065076 169065274 -13349968 - MIR SINE MIR 0 262 60 2069 141 7 3 chr6 169065815 169066114 -13349128 + AluJb SINE Alu 1 300 -12 210 37 0 0 chr6 169066429 169066456 -13348786 + (T)n Simple_repeat Simple_repeat 1 27 0 2215 116 0 3 chr6 169066527 169066828 -13348414 + AluSx SINE Alu 1 300 -12 249 182 0 0 chr6 169067135 169067179 -13348063 + L2 LINE L2 3270 3313 0 183 304 0 43 chr6 169067488 169067557 -13347685 + L2 LINE L2 3201 3266 -6 195 225 127 28 chr6 169067957 169068028 -13347214 + MIR3 SINE MIR 100 177 -31 2339 105 3 0 chr6 169068129 169068433 -13346809 + AluSx SINE Alu 2 306 -6 204 186 23 23 chr6 169069999 169070042 -13345200 - L2 LINE L2 -3 3269 3227 2347 94 0 10 chr6 169071290 169071587 -13343655 + AluSx SINE Alu 1 294 -18 1308 229 56 60 chr6 169071604 169072072 -13343170 + MLT1C LTR MaLR 2 467 0 962 193 14 0 chr6 169073791 169073998 -13341244 + MER93b LTR ERV1 164 373 0 743 264 53 34 chr6 169075051 169075299 -13339943 + MIR SINE MIR 3 259 -3 2328 103 0 3 chr6 169076519 169076830 -13338412 - AluY SINE Alu -1 310 1 306 0 0 0 chr6 169079484 169079518 -13335724 + (TA)n Simple_repeat Simple_repeat 2 35 0 2210 77 48 0 chr6 169079518 169079790 -13335452 - AluSq SINE Alu -28 285 1 318 302 178 0 chr6 169080036 169080165 -13335077 - MIR SINE MIR -75 187 36 261 188 43 0 chr6 169081009 169081078 -13334164 + Charlie1 DNA MER1_type 171 242 -2519 * 553 177 100 8 chr6 169081059 169081099 -13334143 + Charlie1 DNA MER1_type 2620 2655 -106 486 0 0 0 chr6 169081099 169081153 -13334089 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 553 177 100 8 chr6 169081153 169081242 -13334000 + Charlie1 DNA MER1_type 2655 2761 0 436 326 106 31 chr6 169081259 169081828 -13333414 + L1MC1 LINE L1 4906 5519 -602 486 273 106 21 chr6 169081853 169082135 -13333107 + L1MC1 LINE L1 5568 5873 -1935 2237 96 17 3 chr6 169083576 169083878 -13331364 + AluSq SINE Alu 2 307 -6 182 88 0 29 chr6 169085071 169085105 -13330137 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 270 325 75 0 chr6 169085734 169085854 -13329388 - L3 LINE CR1 -7 1570 1442 225 0 0 0 chr6 169086790 169086815 -13328427 + (CA)n Simple_repeat Simple_repeat 1 50 0 225 0 0 0 chr6 169086815 169086840 -13328402 + (CA)n Simple_repeat Simple_repeat 1 25 0 2436 83 0 3 chr6 169087884 169088184 -13327058 + AluSg SINE Alu 1 299 -11 23 0 0 0 chr6 169089055 169089078 -13326164 + AT_rich Low_complexity Low_complexity 1 23 0 1756 127 116 14 chr6 169089225 169089501 -13325741 + AluSx SINE Alu 2 305 -7 261 269 0 3 chr6 169092099 169092477 -13322765 + (TG)n Simple_repeat Simple_repeat 1 376 0 507 280 0 6 chr6 169092579 169092754 -13322488 + (TG)n Simple_repeat Simple_repeat 2 175 0 2174 103 27 0 chr6 169092897 169093189 -13322053 + AluSx SINE Alu 1 300 -12 228 309 18 27 chr6 169094485 169094595 -13320647 + GA-rich Low_complexity Low_complexity 1 109 0 450 288 52 25 chr6 169095344 169095530 -13319712 - MIR SINE MIR -57 205 14 1656 185 11 17 chr6 169096321 169096677 -13318565 + L1MC1 LINE L1 5978 6331 -2 465 267 217 25 chr6 169097561 169097966 -13317276 + L2 LINE L2 2046 2528 -786 2074 155 82 5 chr6 169097985 169098353 -13316889 + MSTD LTR MaLR 1 396 0 383 236 69 42 chr6 169098431 169098575 -13316667 - MIR3 SINE MIR -58 150 3 249 294 0 0 chr6 169098575 169098626 -13316616 - L2 LINE L2 -20 3252 3202 2348 88 0 26 chr6 169099329 169099637 -13315605 + AluSc SINE Alu 1 300 -9 2482 111 11 24 chr6 169099639 169100019 -13315223 - THE1C LTR MaLR 0 375 1 273 369 100 8 chr6 169100179 169100309 -13314933 + L2 LINE L2 3126 3267 -5 2011 123 3 62 chr6 169100763 169101088 -13314154 - AluSx SINE Alu -6 306 1 271 231 88 0 chr6 169101153 169101244 -13313998 - MIR SINE MIR -71 191 93 450 289 39 0 chr6 169102180 169102308 -13312934 - MIR SINE MIR -25 237 105 1862 158 139 16 chr6 169102722 169103103 -13312139 + MSTC LTR MaLR 1 428 0 223 330 55 46 chr6 169103229 169103338 -13311904 + MIR3 SINE MIR 73 182 -26 1743 108 0 37 chr6 169103774 169104043 -13311199 - AluSx SINE Alu -13 299 41 2087 116 0 0 chr6 169104560 169104854 -13310388 + AluSx SINE Alu 1 294 -18 270 0 0 0 chr6 169107364 169107394 -13307848 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 405 229 112 71 chr6 169108037 169108113 -13307129 - MER45A DNA AcHobo -1404 177 106 2020 130 7 0 chr6 169108113 169108414 -13306828 + AluSx SINE Alu 1 303 -9 405 229 112 71 chr6 169108414 169108507 -13306735 - MER45A DNA AcHobo -1475 106 1 232 209 0 0 chr6 169109472 169109515 -13305727 - tRNA-Met-e tRNA tRNA -32 43 1 711 243 111 30 chr6 169109743 169109978 -13305264 - MER112 DNA MER1_type -6 254 1 395 266 95 105 chr6 169110422 169110727 -13304515 - L2 LINE L2 -1 3271 2970 537 313 144 30 chr6 169110834 169111265 -13303977 - L2 LINE L2 -604 2710 2231 1829 113 72 3 chr6 169111883 169112175 -13303067 + AluSx SINE Alu 1 312 0 2193 75 41 0 chr6 169112728 169113020 -13302222 - AluY SINE Alu -7 304 1 263 358 114 28 chr6 169114190 169114612 -13300630 + L2 LINE L2 2471 2928 -386 632 171 17 0 chr6 169115060 169115177 -13300065 + AluSg/x SINE Alu 171 289 -23 662 329 68 59 chr6 169115358 169115661 -13299581 + L2 LINE L2 2435 2734 -538 2235 155 39 41 chr6 169115661 169116126 -13299116 - MLT2C2 LTR ERVL 0 464 1 662 329 68 59 chr6 169116126 169116607 -13298635 + L2 LINE L2 2734 3217 -55 5942 109 17 3 chr6 169117613 169118284 -13296958 - L1PA15 LINE L1 -4 6161 5500 2129 121 0 3 chr6 169118284 169118598 -13296644 - AluSq SINE Alu 0 313 1 5942 109 17 3 chr6 169118598 169119296 -13295946 - L1PA15 LINE L1 -665 5500 4793 1981 126 28 36 chr6 169119297 169119654 -13295588 + THE1C LTR MaLR 1 354 -21 183 42 0 0 chr6 169119815 169119839 -13295403 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1194 251 119 11 chr6 169120004 169120468 -13294774 - Charlie4a DNA MER1_type 0 508 1 2165 98 0 3 chr6 169120745 169121042 -13294200 - AluSq SINE Alu -9 304 9 216 234 143 0 chr6 169121641 169121718 -13293524 + MIR SINE MIR 60 147 -61 2251 79 14 0 chr6 169122389 169122680 -13292562 + AluSx SINE Alu 1 295 -17 891 189 0 0 chr6 169122773 169122926 -13292316 + MER2 DNA MER2_type 1 153 -192 1629 157 0 0 chr6 169122926 169123188 -13292054 - AluJb SINE Alu -10 302 41 556 196 78 0 chr6 169123188 169123290 -13291952 + MER2 DNA MER2_type 236 345 0 2061 88 60 0 chr6 169124724 169125008 -13290234 - AluSx SINE Alu -11 301 1 2244 81 0 3 chr6 169125016 169125311 -13289931 - AluSc SINE Alu -15 294 1 481 352 108 13 chr6 169125678 169126035 -13289207 - L1 LINE L1 -1774 4372 3978 342 201 20 122 chr6 169126036 169126165 -13289077 - MLT1E LTR MaLR 0 654 495 566 207 15 81 chr6 169126281 169126479 -13288763 - MLT1E2 LTR MaLR -441 185 1 1940 106 57 0 chr6 169126527 169126810 -13288432 + AluSx SINE Alu 1 299 -13 290 287 99 20 chr6 169126810 169127103 -13288139 - L1 LINE L1 -2208 3938 3623 337 270 210 32 chr6 169127372 169127620 -13287622 - L1 LINE L1 -2848 3298 3007 304 301 113 8 chr6 169127969 169128102 -13287140 + LTR67 LTR ERVL 406 552 -5 454 349 131 17 chr6 169128269 169128736 -13286506 - L1 LINE L1 -3291 2855 2336 244 163 47 58 chr6 169130163 169130249 -13284993 + (CAGAGA)n Simple_repeat Simple_repeat 6 90 0 433 353 35 5 chr6 169130449 169130650 -13284592 - MIR SINE MIR -43 219 13 1940 136 13 7 chr6 169131742 169132052 -13283190 + AluSx SINE Alu 1 312 0 649 265 160 0 chr6 169132640 169132859 -13282383 - MIR SINE MIR -2 260 7 321 297 11 22 chr6 169135006 169135097 -13280145 + MER5B DNA MER1_type 7 96 -82 2607 109 25 3 chr6 169135592 169135959 -13279283 - THE1C LTR MaLR 0 375 1 10602 97 48 12 chr6 169135959 169137485 -13277757 - THE1C-int LTR MaLR 0 1580 1 2601 78 84 0 chr6 169137485 169137831 -13277411 - THE1C LTR MaLR 0 375 1 1042 113 126 0 chr6 169137932 169138091 -13277151 + MSTA LTR MaLR 250 428 0 253 276 262 14 chr6 169138125 169138270 -13276972 + MER5A DNA MER1_type 9 189 0 1411 165 16 85 chr6 169138600 169138778 -13276464 - AluJo SINE Alu -18 294 105 237 33 0 0 chr6 169138778 169138808 -13276434 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1929 115 0 21 chr6 169138810 169139098 -13276144 - AluSx SINE Alu -30 282 1 1411 165 16 85 chr6 169139098 169139232 -13276010 - AluJo SINE Alu -208 104 1 200 302 19 0 chr6 169140334 169140387 -13274855 - L2 LINE L2 -10 3303 3250 398 292 100 40 chr6 169140576 169140826 -13274416 + L2 LINE L2 2841 3105 -167 270 320 64 0 chr6 169140830 169140955 -13274287 - L2 LINE L2 0 3272 3140 189 338 88 0 chr6 169141001 169141081 -13274161 + L2 LINE L2 3161 3247 -25 2115 88 0 7 chr6 169141839 169142144 -13273098 - AluSq SINE Alu 0 307 5 14815 206 27 35 chr6 169142666 169144874 -13270368 + L1PA12 LINE L1 1539 3763 -3821 1894 148 0 3 chr6 169144874 169145172 -13270070 + AluSx SINE Alu 1 297 -15 14815 206 27 35 chr6 169145172 169146335 -13268907 + L1PA12 LINE L1 3763 4934 -2650 207 0 0 0 chr6 169146335 169146358 -13268884 + (CA)n Simple_repeat Simple_repeat 2 24 0 14815 206 27 35 chr6 169146358 169147574 -13267668 + L1PA12 LINE L1 4934 5972 -1612 2292 85 3 0 chr6 169147574 169147880 -13267362 + AluY SINE Alu 1 307 -4 14815 206 27 35 chr6 169147880 169147993 -13267249 + L1PA12 LINE L1 5972 6084 -1500 698 179 20 94 chr6 169148095 169148296 -13266946 + MLT2C2 LTR ERVL 279 464 0 435 326 82 16 chr6 169148354 169148599 -13266643 - L2 LINE L2 -619 2695 2435 2027 125 0 0 chr6 169148780 169149068 -13266174 - AluSx SINE Alu -23 289 2 399 242 84 11 chr6 169150423 169150518 -13264724 - L2 LINE L2 0 3272 3171 1649 36 0 0 chr6 169150518 169150713 -13264529 + L1PA4 LINE L1 5958 6152 -3 1015 230 9 0 chr6 169150866 169151083 -13264159 + MER20 DNA MER1_type 1 219 0 398 197 14 68 chr6 169151094 169151208 -13264034 + MER5A DNA MER1_type 4 112 -77 203 292 169 22 chr6 169151429 169151518 -13263724 - MER5A DNA MER1_type -50 139 38 333 185 0 0 chr6 169152364 169152429 -13262813 + (TG)n Simple_repeat Simple_repeat 2 66 0 244 130 0 0 chr6 169152429 169152475 -13262767 + L1MC4 LINE L1 6658 6703 -1339 391 275 28 69 chr6 169153290 169153654 -13261588 + L1ME4a LINE L1 4310 4658 -1488 31 44 0 0 chr6 169153816 169153861 -13261381 + AT_rich Low_complexity Low_complexity 1 45 0 789 264 142 36 chr6 169154098 169154986 -13260256 + L1ME4a LINE L1 5116 6119 -2 850 208 83 14 chr6 169155408 169155624 -13259618 + LTR45B LTR ERV1 181 411 -78 2199 96 0 3 chr6 169155634 169155936 -13259306 + AluSx SINE Alu 1 301 -11 762 150 50 36 chr6 169156540 169156680 -13258562 + LTR45B LTR ERV1 348 489 0 236 279 105 23 chr6 169157101 169157187 -13258055 + MIR SINE MIR 59 151 -57 380 240 91 108 chr6 169157213 169157509 -13257733 - L2 LINE L2 -5 3267 2977 1731 160 104 24 chr6 169158830 169159168 -13256074 - MLT1A1 LTR MaLR 0 365 1 33 56 0 0 chr6 169160065 169160119 -13255123 + AT_rich Low_complexity Low_complexity 1 54 0 248 167 0 19 chr6 169160168 169160222 -13255020 + CT-rich Low_complexity Low_complexity 72 124 0 858 151 6 11 chr6 169160237 169160416 -13254826 + CT-rich Low_complexity Low_complexity 3 180 0 1668 120 74 21 chr6 169160615 169160898 -13254344 - AluSx SINE Alu -14 298 1 1830 147 3 7 chr6 169161180 169161472 -13253770 - AluJb SINE Alu -21 291 1 1110 143 12 14 chr6 169164520 169164771 -13250471 + AluSq SINE Alu 1 298 -15 201 196 20 20 chr6 169165099 169165150 -13250092 + L2 LINE L2 3213 3263 -9 213 349 16 32 chr6 169165588 169165714 -13249528 - MIR SINE MIR -66 196 73 344 256 38 53 chr6 169165897 169166030 -13249212 - L1ME4a LINE L1 -175 5946 5816 351 313 30 38 chr6 169166377 169166508 -13248734 - L1ME4a LINE L1 -355 5807 5678 872 169 17 68 chr6 169168285 169168521 -13246721 + Charlie5 DNA MER1_type 2401 2624 0 467 315 87 9 chr6 169169938 169170157 -13245085 + MIR SINE MIR 6 241 -21 649 173 194 47 chr6 169170565 169170756 -13244486 + MER20 DNA MER1_type 1 219 0 433 196 21 60 chr6 169171835 169172080 -13243162 + MER33 DNA MER1_type 1 273 -51 1944 184 23 50 chr6 169173038 169173521 -13241721 + MER31A LTR ERV1 6 475 -10 341 308 86 0 chr6 169174476 169174593 -13240649 - MIR3 SINE MIR -6 202 76 211 215 301 11 chr6 169174835 169174928 -13240314 + MER5A DNA MER1_type 44 163 -26 * 436 232 50 0 chr6 169174858 169174957 -13240285 - MER5A DNA MER1_type -77 112 9 429 186 63 78 chr6 169175019 169175198 -13240044 + MIR3 SINE MIR 28 200 -8 2124 104 3 7 chr6 169177706 169178039 -13237203 + AluSp SINE Alu 1 313 0 209 273 0 0 chr6 169179311 169179355 -13235887 + polypurine Low_complexity Low_complexity 2 45 0 463 266 115 50 chr6 169180578 169180796 -13234446 - MIR SINE MIR -3 259 28 307 296 0 11 chr6 169180796 169180867 -13234375 + CT-rich Low_complexity Low_complexity 3 74 -15 2179 68 17 7 chr6 169180867 169181162 -13234080 - AluY SINE Alu -13 298 1 307 296 0 11 chr6 169181162 169181178 -13234064 + CT-rich Low_complexity Low_complexity 74 89 0 2975 210 77 4 chr6 169181181 169181871 -13233371 - L1MB7 LINE L1 -11 6173 5434 1988 99 0 14 chr6 169181875 169182191 -13233051 - AluSx SINE Alu 0 312 1 380 227 182 14 chr6 169182428 169182573 -13232669 + MIR3 SINE MIR 7 170 -63 883 213 87 28 chr6 169185312 169185565 -13229677 + L1MC4 LINE L1 7774 8041 -1 390 215 172 0 chr6 169185625 169185718 -13229524 - L1MC4 LINE L1 -1339 6703 6595 1709 163 26 7 chr6 169187123 169187429 -13227813 - AluJo SINE Alu 0 312 1 347 315 52 98 chr6 169187585 169188064 -13227178 + L2 LINE L2 2816 3272 0 272 159 0 32 chr6 169189429 169189439 -13225803 + (TAGA)n Simple_repeat Simple_repeat 2 11 -51 2702 3 0 0 chr6 169189439 169189737 -13225505 + AluYa5 SINE Alu 1 298 -13 272 159 0 32 chr6 169189737 169189789 -13225453 + (TAGA)n Simple_repeat Simple_repeat 11 62 0 1700 145 0 7 chr6 169191686 169191955 -13223287 + AluJb SINE Alu 21 287 -25 606 28 0 0 chr6 169191956 169192028 -13223214 + (AAATG)n Simple_repeat Simple_repeat 2 73 0 724 221 125 12 chr6 169192509 169192749 -13222493 - HsTC2 DNA Tc2 -3 1895 1629 1009 234 151 42 chr6 169192879 169193409 -13221833 + L2 LINE L2 2753 3312 -1 245 273 38 95 chr6 169194829 169195144 -13220098 - L2 LINE L2 0 3272 2976 439 188 50 40 chr6 169195260 169195361 -13219881 + L2 LINE L2 3209 3310 -3 222 243 112 132 chr6 169196464 169196616 -13218626 - MIR SINE MIR 0 262 114 21 0 0 0 chr6 169197620 169197641 -13217601 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 169197676 169197697 -13217545 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 169197732 169197753 -13217489 + AT_rich Low_complexity Low_complexity 1 21 0 2212 71 0 4 chr6 169197795 169198103 -13217139 - AluY SINE Alu 0 311 5 241 302 30 83 chr6 169200226 169200395 -13214847 + MIR SINE MIR 90 249 -13 1605 205 129 39 chr6 169200857 169201091 -13214151 + MLT1F1 LTR MaLR 4 216 -351 1888 147 0 16 chr6 169201091 169201404 -13213838 + AluJo SINE Alu 1 308 -4 1605 205 129 39 chr6 169201404 169201675 -13213567 + MLT1F1 LTR MaLR 216 567 0 2219 90 3 17 chr6 169202124 169202425 -13212817 + AluSx SINE Alu 2 298 -14 1469 185 14 30 chr6 169202646 169202943 -13212299 - AluJb SINE Alu -20 292 1 2022 104 17 3 chr6 169204924 169205213 -13210029 + AluSx SINE Alu 1 293 -19 1148 267 94 29 chr6 169206191 169206662 -13208580 + L1ME3A LINE L1 5657 6162 -8 2422 45 0 13 chr6 169206770 169207083 -13208159 + AluY SINE Alu 1 309 -2 384 269 74 0 chr6 169208572 169208680 -13206562 + MIR3 SINE MIR 70 185 -23 319 275 43 29 chr6 169208689 169208827 -13206415 + MIR SINE MIR 15 154 -108 741 172 0 8 chr6 169209840 169209974 -13205268 - FLAM_C SINE Alu 0 133 1 790 236 41 20 chr6 169210273 169210468 -13204774 + MIR SINE MIR 25 223 -39 2167 65 3 42 chr6 169210841 169211149 -13204093 + AluSp SINE Alu 1 296 -17 311 333 90 19 chr6 169211875 169212241 -13203001 - L2 LINE L2 -1199 2115 1724 2045 88 7 3 chr6 169212260 169212572 -13202670 - AluSx SINE Alu 0 313 1 558 194 60 7 chr6 169212953 169213081 -13202161 + MIR SINE MIR 28 152 -62 859 239 43 86 chr6 169213237 169213609 -13201633 + MLT1E2 LTR MaLR 80 435 -191 1654 239 86 103 chr6 169213654 169213857 -13201385 + HAL1 LINE L1 1009 1214 -1293 1711 155 3 40 chr6 169213857 169214160 -13201082 + AluJo SINE Alu 1 292 -20 1654 239 86 103 chr6 169214160 169214847 -13200395 + HAL1 LINE L1 1214 1884 -623 2034 125 7 0 chr6 169214953 169215248 -13199994 + AluSx SINE Alu 1 297 -15 443 203 51 32 chr6 169215253 169215411 -13199831 + HAL1 LINE L1 2052 2212 -295 364 230 272 11 chr6 169215425 169215616 -13199626 + HAL1 LINE L1 2267 2507 0 373 276 23 0 chr6 169216144 169216231 -13199011 - MIR3 SINE MIR 0 208 120 1913 128 4 0 chr6 169217425 169217751 -13197491 + AluSx SINE Alu 1 327 0 1710 88 161 11 chr6 169217824 169218085 -13197157 + AluSg SINE Alu 1 300 0 673 45 48 38 chr6 169218087 169218339 -13196903 + AluY SINE Alu 1 311 0 1483 278 15 21 chr6 169218353 169218831 -13196411 - L1ME3A LINE L1 -320 5850 5376 352 363 30 4 chr6 169219281 169219515 -13195727 + MLT1L LTR MaLR 368 607 -8 2024 121 0 0 chr6 169219544 169219874 -13195368 + AluSx SINE Alu 1 330 0 180 344 133 0 chr6 169220387 169220515 -13194727 + MIR SINE MIR 81 225 -37 1451 248 102 26 chr6 169221911 169222677 -13192565 + L2 LINE L2 2482 3313 0 1463 210 70 22 chr6 169222973 169223330 -13191912 + MLT1A2 LTR MaLR 1 374 0 888 137 0 0 chr6 169224249 169224380 -13190862 - FLAM_C SINE Alu -2 131 1 234 245 163 41 chr6 169224701 169224799 -13190443 + MIR3 SINE MIR 50 159 -49 1597 201 89 45 chr6 169225703 169226150 -13189092 - MLT1C LTR MaLR 0 467 1 2035 142 0 0 chr6 169226530 169226839 -13188403 + AluSx SINE Alu 1 309 -3 202 264 179 28 chr6 169227108 169227214 -13188028 + L2 LINE L2 3150 3271 -1 343 319 51 25 chr6 169228331 169228488 -13186754 - MIR3 SINE MIR -7 201 41 532 256 300 8 chr6 169229296 169229955 -13185287 + L2 LINE L2 2458 3311 -2 282 284 159 0 chr6 169231083 169231171 -13184071 - L2 LINE L2 -2 3311 3210 278 384 75 0 chr6 169231568 169231701 -13183541 + MIR SINE MIR 108 250 -12 200 302 0 32 chr6 169231852 169231915 -13183327 + L2 LINE L2 3001 3061 -252 319 285 146 34 chr6 169232361 169232656 -13182586 + L2 LINE L2 2376 2703 -611 545 95 0 0 chr6 169232687 169232761 -13182481 + AluJ/FRAM SINE Alu 222 295 -17 394 245 277 0 chr6 169234880 169235035 -13180207 + MIR SINE MIR 2 199 -63 186 364 43 50 chr6 169235403 169235543 -13179699 + MIR3 SINE MIR 3 141 -67 214 328 82 8 chr6 169236067 169236189 -13179053 - MIR3 SINE MIR 0 208 78 2048 107 0 23 chr6 169236506 169236806 -13178436 - AluSx SINE Alu -19 293 1 25 0 0 0 chr6 169236882 169236907 -13178335 + AT_rich Low_complexity Low_complexity 1 25 0 186 71 0 0 chr6 169237402 169237430 -13177812 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 1507 93 5 0 chr6 169237432 169237637 -13177605 - AluSg/x SINE Alu -24 286 81 180 0 0 0 chr6 169237781 169237801 -13177441 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 380 85 0 0 chr6 169237977 169238036 -13177206 - L1PA15 LINE L1 0 6165 6107 234 133 67 17 chr6 169238036 169238091 -13177151 + LTR66 LTR ERVL 382 439 -171 307 164 104 0 chr6 169238091 169238158 -13177084 + L1MCa LINE L1 1995 2068 -4358 387 258 0 32 chr6 169238159 169238252 -13176990 + L1MC4 LINE L1 6614 6703 -1339 2518 136 19 9 chr6 169238256 169238667 -13176575 - L1PA15 LINE L1 -35 6130 5720 2197 98 0 3 chr6 169239493 169239789 -13175453 + AluSg SINE Alu 1 295 -15 2089 96 26 3 chr6 169239981 169240284 -13174958 + AluSx SINE Alu 1 310 -2 269 155 17 0 chr6 169240664 169240722 -13174520 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 259 265 10 167 chr6 169241869 169241968 -13173274 + MER97b DNA MER1_type? 6 58 -995 2096 121 16 0 chr6 169241968 169242275 -13172967 + AluSx SINE Alu 1 312 0 259 265 10 167 chr6 169242275 169242379 -13172863 + MER97b DNA MER1_type? 58 177 -876 1096 227 44 4 chr6 169243200 169243451 -13171791 - MIR SINE MIR 0 262 2 299 329 0 12 chr6 169243725 169243807 -13171435 - L2 LINE L2 0 3272 3192 26 0 0 0 chr6 169244082 169244108 -13171134 + AT_rich Low_complexity Low_complexity 1 26 0 7103 156 46 18 chr6 169245047 169245129 -13170113 - L1 LINE L1 -1875 4271 4193 2139 105 7 0 chr6 169245129 169245435 -13169807 - AluSx SINE Alu -4 308 1 7103 156 46 18 chr6 169245435 169246757 -13168485 - L1 LINE L1 -1953 4193 2828 5880 161 51 52 chr6 169246753 169248244 -13166998 + L1MA10 LINE L1 4248 5739 -595 * 2098 122 0 6 chr6 169248244 169248556 -13166686 + AluSx SINE Alu 1 310 -2 2184 151 8 6 chr6 169248564 169248921 -13166321 - MER46B DNA MER2_type -1 235 3 537 160 0 11 chr6 169248922 169249016 -13166226 + MER46A DNA MER2_type 144 236 0 5880 161 51 52 chr6 169249016 169249486 -13165756 + L1MA10 LINE L1 5745 6294 -40 243 0 0 0 chr6 169250024 169250051 -13165191 + (CACTC)n Simple_repeat Simple_repeat 3 29 0 249 246 40 111 chr6 169250609 169250735 -13164507 - MIR SINE MIR -33 229 113 287 260 40 40 chr6 169251305 169251405 -13163837 + MER5A DNA MER1_type 64 163 -26 366 262 189 19 chr6 169251915 169252121 -13163121 - L1ME4a LINE L1 -87 6034 5794 618 119 0 0 chr6 169252149 169252233 -13163009 + AluS SINE Alu 4 87 -225 219 253 200 21 chr6 169252443 169252538 -13162704 - MIR SINE MIR -19 243 132 1120 264 70 13 chr6 169252673 169253056 -13162186 + MLT1I LTR MaLR 1 405 -4 411 282 172 6 chr6 169253600 169253774 -13161468 + MIR SINE MIR 47 249 -13 2353 167 12 45 chr6 169254585 169254701 -13160541 + L1MB7 LINE L1 5711 5829 -355 1867 127 0 0 chr6 169254701 169254968 -13160274 + AluSx SINE Alu 17 283 -29 1234 115 0 0 chr6 169254968 169255019 -13160223 + AluSq SINE Alu 17 334 0 2353 167 12 45 chr6 169255019 169255391 -13159851 + L1MB7 LINE L1 5829 6184 0 2006 129 7 0 chr6 169255677 169255979 -13159263 - AluSx SINE Alu -8 304 1 322 194 15 30 chr6 169256086 169256153 -13159089 - L2 LINE L2 -10 3262 3197 2084 118 0 0 chr6 169256479 169256775 -13158467 - AluSx SINE Alu -16 296 1 255 125 0 0 chr6 169257406 169257446 -13157796 + (A)n Simple_repeat Simple_repeat 1 40 0 290 236 185 34 chr6 169257735 169257873 -13157369 + MLT1H1 LTR MaLR 393 555 0 1929 133 0 0 chr6 169258481 169258787 -13156455 - AluSx SINE Alu 0 311 6 235 236 22 67 chr6 169261887 169261976 -13153266 + L3 LINE CR1 1492 1576 -1 1753 125 0 90 chr6 169262099 169262304 -13152938 - AluJo SINE Alu 0 312 149 1876 96 73 43 chr6 169262304 169262605 -13152637 - AluSx SINE Alu -2 310 1 1753 125 0 90 chr6 169262605 169262742 -13152500 - AluJo SINE Alu -163 149 1 1516 92 22 22 chr6 169263458 169263685 -13151557 + AluSp SINE Alu 79 305 -8 24 0 0 0 chr6 169264052 169264076 -13151166 + AT_rich Low_complexity Low_complexity 1 24 0 2079 107 7 3 chr6 169265342 169265509 -13149733 - AluSq SINE Alu -12 301 131 252 0 0 0 chr6 169265509 169265537 -13149705 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2079 107 7 3 chr6 169265537 169265669 -13149573 - AluSq SINE Alu -182 131 1 844 158 12 41 chr6 169267867 169268038 -13147204 + FRAM SINE Alu 1 166 0 516 279 132 35 chr6 169268301 169268559 -13146683 + MLT1J LTR MaLR 229 511 0 261 0 0 0 chr6 169268717 169268746 -13146496 + (CA)n Simple_repeat Simple_repeat 2 30 0 395 233 0 0 chr6 169268837 169268910 -13146332 + L2 LINE L2 3239 3311 -2 2089 86 0 7 chr6 169269566 169269844 -13145398 + AluSx SINE Alu 37 312 0 2067 116 3 0 chr6 169270676 169270970 -13144272 + AluSx SINE Alu 2 296 -16 289 239 0 70 chr6 169271055 169271126 -13144116 - L2 LINE L2 -9 3263 3198 309 26 0 0 chr6 169271498 169271536 -13143706 + (CA)n Simple_repeat Simple_repeat 1 38 0 904 84 0 15 chr6 169272000 169272131 -13143111 - AluY SINE Alu -12 299 171 851 259 35 13 chr6 169272450 169272682 -13142560 - MIR SINE MIR 0 262 26 1181 232 43 20 chr6 169272869 169273165 -13142077 + L1ME1 LINE L1 5870 6331 -3 562 314 31 11 chr6 169273468 169273659 -13141583 + MIR SINE MIR 17 211 -51 1629 89 5 0 chr6 169273659 169273872 -13141370 + AluSx SINE Alu 1 214 -98 1619 155 50 7 chr6 169274357 169274475 -13140767 + AluJo SINE Alu 1 112 -200 189 0 0 0 chr6 169274475 169274496 -13140746 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1619 155 50 7 chr6 169274496 169274654 -13140588 + AluJo SINE Alu 112 289 -23 670 277 26 0 chr6 169274710 169274905 -13140337 - MER115 DNA AcHobo -7 686 487 529 260 36 40 chr6 169274976 169275199 -13140043 - MER115 DNA AcHobo -321 372 151 2051 134 3 0 chr6 169275391 169275698 -13139544 - AluSx SINE Alu -4 308 1 1979 118 0 0 chr6 169275827 169276146 -13139096 + AluSx SINE Alu 3 321 0 267 31 0 0 chr6 169276729 169276761 -13138481 + (TC)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr6 169277344 169277370 -13137872 + (ATG)n Simple_repeat Simple_repeat 2 27 0 360 0 0 0 chr6 169277389 169277429 -13137813 + (TG)n Simple_repeat Simple_repeat 2 41 0 2012 122 7 0 chr6 169277844 169278139 -13137103 - AluSx SINE Alu -15 297 1 259 310 305 11 chr6 169278371 169278545 -13136697 + MIR SINE MIR 32 256 -6 713 247 58 11 chr6 169278580 169278770 -13136472 - MIR SINE MIR -12 250 52 2453 120 13 13 chr6 169279165 169279540 -13135702 - THE1C LTR MaLR 0 375 1 1599 162 37 14 chr6 169280127 169280424 -13134818 - AluJb SINE Alu -6 306 3 2063 123 3 0 chr6 169280678 169280978 -13134264 - AluSx SINE Alu -11 301 1 2842 199 29 9 chr6 169281548 169282342 -13132900 - L1MB5 LINE L1 0 6174 5274 270 0 0 0 chr6 169282342 169282372 -13132870 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6676 92 11 1 chr6 169282372 169283302 -13131940 - L1PA10 LINE L1 -20 6148 5211 441 105 12 0 chr6 169284439 169284525 -13130717 + L1MB3 LINE L1 6097 6183 0 274 275 21 146 chr6 169286158 169286391 -13128851 - MIR SINE MIR 0 262 59 250 165 89 101 chr6 169286610 169286689 -13128553 - L2 LINE L2 -7 3265 3188 1939 140 0 0 chr6 169286695 169286987 -13128255 + AluJb SINE Alu 1 292 -20 204 118 29 0 chr6 169287157 169287191 -13128051 + CT-rich Low_complexity Low_complexity 2 36 0 230 244 268 12 chr6 169287333 169287415 -13127827 + MIR SINE MIR 105 207 -55 32 26 0 0 chr6 169288286 169288325 -13126917 + AT_rich Low_complexity Low_complexity 1 39 0 275 281 53 26 chr6 169288885 169288999 -13126243 - MIR3 SINE MIR -1 207 91 218 261 232 0 chr6 169290197 169290266 -13124976 - L2 LINE L2 -2 3270 3186 1780 172 3 0 chr6 169290511 169290802 -13124440 + AluJb SINE Alu 6 297 -15 26 0 0 0 chr6 169290802 169290828 -13124414 + AT_rich Low_complexity Low_complexity 1 26 0 387 270 58 36 chr6 169291239 169291376 -13123866 + MIR SINE MIR 50 189 -73 1961 207 35 61 chr6 169291755 169292202 -13123040 + MLT1D LTR MaLR 1 435 -70 1874 98 11 4 chr6 169292202 169292466 -13122776 - AluSc SINE Alu -9 300 35 1961 207 35 61 chr6 169292466 169292529 -13122713 + MLT1D LTR MaLR 435 498 -7 414 168 0 28 chr6 169292860 169292967 -13122275 + CT-rich Low_complexity Low_complexity 4 107 0 188 348 36 18 chr6 169292970 169293082 -13122160 - L2 LINE L2 -5 3267 3154 597 261 107 13 chr6 169293106 169293340 -13121902 + MER112 DNA MER1_type 1 256 0 205 349 28 28 chr6 169296036 169296145 -13119097 + L2 LINE L2 3198 3306 -7 374 291 99 49 chr6 169296497 169296872 -13118370 - L2 LINE L2 -170 3102 2715 662 325 111 13 chr6 169296882 169297556 -13117686 + L1M4 LINE L1 3922 4659 -1487 209 269 68 72 chr6 169297558 169297807 -13117435 - L2 LINE L2 -620 2694 2447 313 323 10 0 chr6 169298654 169298750 -13116492 - MER5A DNA MER1_type -84 105 9 21 36 0 0 chr6 169299033 169299061 -13116181 + AT_rich Low_complexity Low_complexity 1 28 0 195 205 107 116 chr6 169300461 169300573 -13114669 + MIR SINE MIR 92 202 -60 2231 94 0 0 chr6 169300627 169300926 -13114316 + AluSx SINE Alu 1 299 -13 2141 64 40 20 chr6 169301017 169301315 -13113927 - AluY SINE Alu -5 306 3 241 241 0 17 chr6 169301508 169301566 -13113676 - MLT1L LTR MaLR -3 612 556 275 182 0 18 chr6 169301648 169301703 -13113539 - MLT1L LTR MaLR -548 67 14 3621 154 39 78 chr6 169302457 169303342 -13111900 + L1MC2 LINE L1 5366 6207 -137 296 302 23 16 chr6 169304135 169304264 -13110978 + L1MC4a LINE L1 5521 5650 -471 280 286 22 84 chr6 169304471 169304564 -13110678 + MLT1L LTR MaLR 434 512 -103 1970 73 96 0 chr6 169304564 169304836 -13110406 - AluY SINE Alu -13 298 1 280 286 22 84 chr6 169304836 169304920 -13110322 + MLT1L LTR MaLR 512 600 -15 785 284 55 7 chr6 169304931 169305202 -13110040 + L1MC4a LINE L1 5645 5928 -1880 1958 94 3 78 chr6 169305407 169305727 -13109515 + AluSg SINE Alu 1 296 -14 1650 180 3 19 chr6 169305838 169306154 -13109088 - AluJo SINE Alu -1 311 1 2131 116 3 0 chr6 169306641 169306942 -13108300 - AluSx SINE Alu -10 302 1 189 0 0 0 chr6 169307692 169307713 -13107529 + (A)n Simple_repeat Simple_repeat 1 21 0 253 286 95 8 chr6 169308181 169308307 -13106935 - MIR3 SINE MIR -28 180 44 1721 137 48 0 chr6 169308311 169308582 -13106660 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr6 169308586 169308611 -13106631 + (TAA)n Simple_repeat Simple_repeat 2 26 0 248 259 0 0 chr6 169309353 169309407 -13105835 - L2 LINE L2 -9 3304 3251 1992 151 0 0 chr6 169309942 169310254 -13104988 + AluSx SINE Alu 1 312 0 2277 97 0 0 chr6 169310296 169310596 -13104646 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr6 169310596 169310622 -13104620 + (TA)n Simple_repeat Simple_repeat 2 27 0 183 250 21 21 chr6 169310715 169310763 -13104479 - MER5B DNA MER1_type -2 176 129 300 222 56 0 chr6 169310818 169310890 -13104352 - L1MC4a LINE L1 -1 7807 7732 642 172 139 21 chr6 169311151 169311347 -13103895 - L1MD2 LINE L1 -122 6063 5841 188 327 26 53 chr6 169311372 169311485 -13103757 + MER5A DNA MER1_type 80 189 0 2281 93 0 0 chr6 169311540 169311841 -13103401 + AluSc SINE Alu 1 301 -8 199 368 87 32 chr6 169311852 169312037 -13103205 - L3 LINE CR1 -1123 454 260 1668 87 4 13 chr6 169312455 169312686 -13102556 + AluSx SINE Alu 52 280 -32 224 0 65 0 chr6 169312697 169312728 -13102514 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 285 292 124 18 chr6 169312893 169313006 -13102236 + L2 LINE L2 3183 3307 -6 1231 261 89 39 chr6 169313309 169313617 -13101625 + MLT1J LTR MaLR 5 347 -164 4254 84 22 16 chr6 169313617 169314239 -13101003 + L1PA10 LINE L1 5543 6168 0 1231 261 89 39 chr6 169314239 169314412 -13100830 + MLT1J LTR MaLR 347 510 -1 299 301 229 26 chr6 169315310 169315463 -13099779 + MIR SINE MIR 31 214 -48 405 237 46 61 chr6 169315734 169315865 -13099377 + MER91B DNA MER1_type 1 129 -61 368 337 10 0 chr6 169315878 169315979 -13099263 + MER91B DNA MER1_type 84 185 -5 24 0 0 0 chr6 169316973 169316997 -13098245 + AT_rich Low_complexity Low_complexity 1 24 0 2340 62 0 0 chr6 169317003 169317292 -13097950 + AluY SINE Alu 1 289 -22 313 206 32 64 chr6 169317657 169317793 -13097449 + L1MC3 LINE L1 7717 7785 0 1998 123 13 0 chr6 169318100 169318401 -13096841 + AluSx SINE Alu 1 305 -7 357 245 112 0 chr6 169318461 169318559 -13096683 + MIR SINE MIR 119 227 -35 1820 119 7 36 chr6 169319500 169319802 -13095440 + AluSx SINE Alu 1 293 -19 257 193 12 0 chr6 169321069 169321120 -13094122 + MIR SINE MIR 99 151 -57 521 179 192 86 chr6 169321910 169322144 -13093098 - MER112 DNA MER1_type -1 259 1 201 143 204 0 chr6 169324436 169324534 -13090708 + (GGCTG)n Simple_repeat Simple_repeat 4 121 0 1881 203 75 29 chr6 169324801 169325280 -13089962 + MLT1D LTR MaLR 1 501 -4 2200 85 3 3 chr6 169326725 169327020 -13088222 - AluSc SINE Alu -13 296 2 1898 158 0 16 chr6 169327069 169327379 -13087863 + AluJo SINE Alu 1 305 -7 1000 281 78 68 chr6 169327744 169328260 -13086982 - MLT1G1 LTR MaLR -2 593 73 2169 94 3 13 chr6 169329356 169329663 -13085579 + AluSp SINE Alu 1 304 -9 261 0 0 0 chr6 169329860 169329889 -13085353 + (CA)n Simple_repeat Simple_repeat 2 30 0 242 274 66 9 chr6 169330562 169330668 -13084574 + L1ME LINE L1 5763 5874 -292 541 289 91 39 chr6 169330683 169331092 -13084150 + L1MCc LINE L1 38 467 -5956 1835 250 94 71 chr6 169331437 169333043 -13082199 + L1MCc LINE L1 1129 2969 -4153 926 225 81 51 chr6 169333036 169333369 -13081873 + L1MC4 LINE L1 7699 8041 -1 * 506 210 42 50 chr6 169334699 169334818 -13080424 - L2 LINE L2 0 3313 3196 243 244 0 0 chr6 169335325 169335370 -13079872 + polypurine Low_complexity Low_complexity 3 47 0 31 26 0 0 chr6 169336152 169336190 -13079052 + AT_rich Low_complexity Low_complexity 1 38 0 956 84 0 0 chr6 169336191 169336310 -13078932 - FLAM_C SINE Alu -14 119 1 477 219 86 151 chr6 169336454 169336732 -13078510 - MIR SINE MIR 0 262 3 290 293 191 9 chr6 169336732 169336870 -13078372 + MIR SINE MIR 14 153 -58 1581 161 32 11 chr6 169337152 169337437 -13077805 + AluJo SINE Alu 1 291 -21 884 128 8 0 chr6 169337453 169337586 -13077656 + AluJo SINE Alu 1 134 -178 54 49 0 0 chr6 169340551 169340633 -13074609 + GC_rich Low_complexity Low_complexity 1 82 0 43 88 0 0 chr6 169340778 169340891 -13074351 + GC_rich Low_complexity Low_complexity 1 113 0 21 0 0 0 chr6 169340940 169340961 -13074281 + GC_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr6 169341192 169341254 -13073988 + GC_rich Low_complexity Low_complexity 1 62 0 210 37 0 0 chr6 169341425 169341452 -13073790 + (TCC)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr6 169341569 169341593 -13073649 + GC_rich Low_complexity Low_complexity 1 24 0 303 298 221 0 chr6 169342558 169342716 -13072526 - MIR SINE MIR -22 240 48 325 214 29 166 chr6 169343244 169343458 -13071784 + L1MC5 LINE L1 7676 7837 -124 1486 244 96 39 chr6 169343458 169344019 -13071223 - MLT1E LTR MaLR 0 593 1 325 214 29 166 chr6 169344019 169344112 -13071130 + L1MC5 LINE L1 7837 7941 -20 1178 208 4 29 chr6 169344335 169344580 -13070662 - MER8 DNA MER2_type 0 239 1 349 207 141 91 chr6 169344612 169344810 -13070432 - L2 LINE L2 0 3313 3106 262 258 31 41 chr6 169344860 169344957 -13070285 - L2 LINE L2 -367 2946 2851 2359 168 13 0 chr6 169345275 169345673 -13069569 + MER57A LTR ERV1 1 403 0 701 278 25 25 chr6 169345854 169346052 -13069190 - MIR SINE MIR -32 230 33 1188 226 24 45 chr6 169346302 169346459 -13068783 - LTR16C LTR ERVL -36 455 305 3609 102 19 26 chr6 169346459 169346990 -13068252 - MER1A DNA MER1_type 0 527 1 1188 226 24 45 chr6 169346990 169347120 -13068122 - LTR16C LTR ERVL -186 305 174 409 36 0 0 chr6 169347790 169347845 -13067397 - AluSp SINE Alu -12 300 246 1308 81 6 0 chr6 169347845 169348018 -13067224 - AluSp SINE Alu -139 174 1 2285 70 3 29 chr6 169348025 169348339 -13066903 - AluY SINE Alu -5 306 1 476 259 142 42 chr6 169348415 169348474 -13066768 - HAL1b LINE L1 -1 1347 1295 2338 61 0 0 chr6 169348474 169348771 -13066471 + AluY SINE Alu 12 308 -3 476 259 142 42 chr6 169348771 169348923 -13066319 - HAL1b LINE L1 -53 1295 1115 773 241 82 29 chr6 169349068 169349313 -13065929 - L1MC4 LINE L1 -303 7739 7482 1280 193 4 8 chr6 169350126 169350375 -13064867 - AluJo SINE Alu -23 289 42 1747 254 113 68 chr6 169351050 169351246 -13063996 - L1MC4a LINE L1 -402 7406 7220 1713 147 3 24 chr6 169351246 169351538 -13063704 + AluJb SINE Alu 1 286 -26 1747 254 113 68 chr6 169351538 169351899 -13063343 - L1MC4a LINE L1 -588 7220 6877 2195 119 0 0 chr6 169351899 169352211 -13063031 - AluSx SINE Alu 0 312 1 1747 254 113 68 chr6 169352211 169352675 -13062567 - L1MC4a LINE L1 -931 6877 6338 381 50 67 0 chr6 169352726 169352784 -13062458 + MER73 LTR ERVL 1 62 -582 2144 188 38 38 chr6 169352784 169353189 -13062053 - MER66B LTR ERV1 0 486 79 2082 105 0 3 chr6 169353189 169353485 -13061757 - AluSx SINE Alu -17 295 1 2144 188 38 38 chr6 169353485 169353557 -13061685 - MER66B LTR ERV1 -406 80 9 * 2990 186 44 9 chr6 169353553 169354122 -13061120 + MER73 LTR ERVL 54 642 -2 900 231 47 8 chr6 169354123 169354378 -13060864 - L1M4 LINE L1 -2053 4093 3829 1711 110 0 0 chr6 169354390 169354627 -13060615 + AluSx SINE Alu 1 237 -75 2247 65 3 19 chr6 169554996 169555303 -12859939 - L1PB1 LINE L1 -7 6144 5843 3021 110 3 6 chr6 169555326 169555864 -12859378 + L1P5 LINE L1 5141 5676 -475 2214 123 7 3 chr6 169556055 169556363 -12858879 + AluSq SINE Alu 1 309 -4 385 254 173 19 chr6 169556823 169557193 -12858049 - L1M4 LINE L1 -1378 4768 4342 2081 104 59 0 chr6 169557247 169557416 -12857826 - AluY SINE Alu -7 304 110 423 0 0 0 chr6 169557416 169557463 -12857779 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 2081 104 59 0 chr6 169557463 169557580 -12857662 - AluY SINE Alu -201 110 1 363 271 68 23 chr6 169558877 169559010 -12856232 + MIR SINE MIR 19 157 -105 225 337 61 0 chr6 169559385 169559483 -12855759 + MIR SINE MIR 151 254 -8 4887 139 17 7 chr6 169559844 169561089 -12854153 + L1MA4A LINE L1 4814 6071 -232 743 178 0 0 chr6 169561114 169561232 -12854010 - FLAM_C SINE Alu -24 119 2 433 248 0 0 chr6 169561280 169561393 -12853849 + L1PB4 LINE L1 6044 6156 0 181 341 0 12 chr6 169561667 169561749 -12853493 + MIR SINE MIR 156 236 -26 978 238 11 31 chr6 169562457 169562526 -12852716 + L2 LINE L2 1894 1963 -1351 305 314 7 29 chr6 169562526 169562663 -12852579 + MER94 DNA DNA 1 134 0 978 238 11 31 chr6 169562663 169562879 -12852363 + L2 LINE L2 1963 2173 -1141 1003 198 108 145 chr6 169562938 169563429 -12851813 + MLT1F1 LTR MaLR 93 565 -2 453 243 26 13 chr6 169563434 169563586 -12851656 + L2 LINE L2 2276 2429 -885 1195 278 49 36 chr6 169563745 169564518 -12850724 + L2 LINE L2 2487 3270 -43 452 130 0 13 chr6 169564518 169564595 -12850647 + L1 LINE L1 2953 3028 -3118 1498 184 0 0 chr6 169564695 169564962 -12850280 + L1 LINE L1 3392 3658 -2488 496 263 141 0 chr6 169565352 169565508 -12849734 + MER45A DNA AcHobo 1 178 0 180 0 0 0 chr6 169566027 169566047 -12849195 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2327 70 3 17 chr6 169566047 169566337 -12848905 - AluSx SINE Alu -24 288 1 473 253 139 21 chr6 169566607 169566801 -12848441 - MIR SINE MIR -31 231 15 805 108 0 0 chr6 169569661 169569772 -12845470 + AluJb SINE Alu 1 111 -201 965 168 64 6 chr6 169569919 169570092 -12845150 + AluJb SINE Alu 112 294 -18 2296 84 3 19 chr6 169570778 169571087 -12844155 - AluY SINE Alu -7 304 1 1607 144 70 25 chr6 169572426 169572710 -12842532 + AluJo SINE Alu 1 297 -15 501 266 121 6 chr6 169572766 169572971 -12842271 - MIR SINE MIR -17 245 15 21 36 0 0 chr6 169574143 169574171 -12841071 + AT_rich Low_complexity Low_complexity 1 28 0 864 167 78 39 chr6 169579770 169579974 -12835268 + MER51C LTR ERV1 429 640 0 212 97 0 0 chr6 169580904 169580935 -12834307 + MIR SINE MIR 117 147 -115 281 350 15 29 chr6 169581263 169581400 -12833842 + L2 LINE L2 3138 3272 0 1830 164 3 0 chr6 169581550 169581843 -12833399 - AluJb SINE Alu -18 294 1 196 295 85 8 chr6 169582318 169582447 -12832795 - L2 LINE L2 -179 3093 2955 627 287 12 0 chr6 169583042 169583209 -12832033 - MIR SINE MIR -6 256 88 2301 155 56 7 chr6 169584225 169584639 -12830603 - Tigger3(Golem) DNA MER2_type -1 3028 2595 445 275 0 0 chr6 169584644 169584811 -12830431 + (CACTA)n Simple_repeat Simple_repeat 5 171 0 440 266 0 11 chr6 169584977 169585154 -12830088 + (CACTA)n Simple_repeat Simple_repeat 2 176 0 1582 132 83 9 chr6 169585211 169585537 -12829705 - Tigger3(Golem) DNA MER2_type -396 2633 2284 574 210 0 0 chr6 169585545 169585645 -12829597 - Tigger3(Golem) DNA MER2_type -2929 100 1 567 284 12 5 chr6 169585717 169585927 -12829315 - MIR SINE MIR -23 239 30 239 230 16 63 chr6 169586175 169586301 -12828941 + (TG)n Simple_repeat Simple_repeat 1 120 0 223 203 34 17 chr6 169586700 169586759 -12828483 - MIR SINE MIR -136 126 67 855 132 34 98 chr6 169586821 169586884 -12828358 + L1M4 LINE L1 5611 5676 -508 2305 111 3 0 chr6 169586884 169587190 -12828052 + AluSc SINE Alu 1 307 -2 855 132 34 98 chr6 169587190 169587331 -12827911 + L1M4 LINE L1 5676 5802 -382 473 253 139 21 chr6 169588779 169588973 -12826269 + MIR SINE MIR 15 231 -31 2215 120 0 3 chr6 169589243 169589552 -12825690 + AluSx SINE Alu 1 308 -4 12035 203 67 38 chr6 169590130 169592688 -12822554 - L1M4 LINE L1 -650 6032 3548 1445 189 68 14 chr6 169592688 169592969 -12822273 - AluJo SINE Alu -16 296 1 12035 203 67 38 chr6 169592969 169593905 -12821337 - L1M4 LINE L1 -3134 3548 2640 2226 132 0 3 chr6 169593905 169594209 -12821033 - AluSx SINE Alu -9 303 1 12035 203 67 38 chr6 169594209 169594384 -12820858 - L1M4 LINE L1 -4042 2640 2471 1763 131 4 0 chr6 169594384 169594629 -12820613 - AluSc SINE Alu -10 299 54 12035 203 67 38 chr6 169594629 169596215 -12819027 - L1M4 LINE L1 -4211 2471 577 2128 117 3 23 chr6 169596215 169596523 -12818719 - AluSg SINE Alu -8 302 1 12035 203 67 38 chr6 169596523 169597102 -12818140 - L1M4 LINE L1 -6105 577 16 527 321 46 52 chr6 169597510 169597877 -12817365 + L3 LINE CR1 1053 1417 -160 2074 109 77 0 chr6 169599493 169599778 -12815464 - AluSc SINE Alu -2 307 1 2420 65 0 3 chr6 169600520 169600812 -12814430 - AluSc SINE Alu -18 291 1 21 0 0 0 chr6 169601025 169601046 -12814196 + AT_rich Low_complexity Low_complexity 1 21 0 277 390 0 25 chr6 169601079 169601197 -12814045 + MIR SINE MIR 21 135 -73 220 240 93 0 chr6 169601257 169601332 -12813910 + L2 LINE L2 3191 3272 0 2042 151 0 16 chr6 169601574 169601891 -12813351 + AluJb SINE Alu 1 312 0 25 51 0 0 chr6 169602137 169602176 -12813066 + AT_rich Low_complexity Low_complexity 1 39 0 2334 97 10 0 chr6 169602479 169602787 -12812455 - AluSp SINE Alu -2 311 1 2285 113 0 3 chr6 169604203 169604512 -12810730 - AluSc SINE Alu -1 308 1 374 288 40 55 chr6 169605106 169605319 -12809923 + MIR SINE MIR 4 211 -51 2146 88 31 10 chr6 169605825 169606119 -12809123 + AluSq SINE Alu 1 300 -13 251 337 56 11 chr6 169606135 169606224 -12809018 - MIR SINE MIR -100 108 16 246 182 23 0 chr6 169608450 169608494 -12806748 - L2 LINE L2 -18 3295 3251 22 0 0 0 chr6 169608653 169608675 -12806567 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 169608919 169608945 -12806297 + AT_rich Low_complexity Low_complexity 1 26 0 2052 146 0 0 chr6 169609525 169609820 -12805422 + AluSx SINE Alu 1 295 -17 369 0 0 0 chr6 169610108 169610149 -12805093 + (TA)n Simple_repeat Simple_repeat 1 41 0 390 314 88 0 chr6 169610369 169610528 -12804714 + MIR SINE MIR 90 262 0 1424 172 72 4 chr6 169611138 169611388 -12803854 - AluJo SINE Alu -45 267 1 2329 94 0 7 chr6 169611490 169611789 -12803453 - AluSq SINE Alu -16 297 1 7162 190 39 26 chr6 169612364 169614720 -12800522 - L1 LINE L1 -3228 3100 777 2233 112 0 0 chr6 169614720 169615016 -12800226 - AluSx SINE Alu -12 300 5 7162 190 39 26 chr6 169615016 169615470 -12799772 - L1 LINE L1 -5551 777 245 3600 70 14 9 chr6 169615470 169615912 -12799330 + MLT2A1 LTR ERVL 1 444 0 7162 190 39 26 chr6 169615912 169616151 -12799091 - L1 LINE L1 -6083 245 11 3308 204 110 43 chr6 169616149 169617215 -12798027 - L1MDa LINE L1 -4624 1916 780 * 252 296 11 128 chr6 169617236 169617415 -12797827 - L1MDa LINE L1 -5592 948 791 1119 137 102 0 chr6 169617520 169617717 -12797525 + MER47A DNA MER2_type 2 218 -148 180 0 0 0 chr6 169617724 169617744 -12797498 + (T)n Simple_repeat Simple_repeat 1 20 0 2034 112 3 48 chr6 169617953 169618267 -12796975 - AluJb SINE Alu -12 300 1 640 145 129 0 chr6 169618267 169618391 -12796851 + MER47A DNA MER2_type 226 365 -1 275 267 147 0 chr6 169618494 169618569 -12796673 + L2 LINE L2 3227 3312 -1 951 205 111 34 chr6 169618655 169618800 -12796442 + MER5C DNA MER1_type 2 134 -190 2416 69 0 0 chr6 169618800 169619089 -12796153 - AluSc SINE Alu -20 289 1 951 205 111 34 chr6 169619089 169619130 -12796112 + MER5C DNA MER1_type 134 170 -154 1099 176 8 49 chr6 169619130 169619374 -12795868 - L1MB3 LINE L1 -2 6181 5948 951 205 111 34 chr6 169619374 169619484 -12795758 + MER5C DNA MER1_type 170 322 -2 415 245 195 6 chr6 169619756 169619915 -12795327 - MIR SINE MIR -13 249 61 1355 159 4 0 chr6 169620127 169620354 -12794888 + AluSg/x SINE Alu 85 312 0 603 301 160 27 chr6 169620567 169620979 -12794263 + L2 LINE L2 1929 2395 -919 1766 161 107 93 chr6 169620979 169621263 -12793979 - MLT1D LTR MaLR -7 498 203 2374 69 0 16 chr6 169621263 169621568 -12793674 - AluY SINE Alu -7 304 5 1766 161 107 93 chr6 169621568 169621767 -12793475 - MLT1D LTR MaLR -302 203 8 21 0 0 0 chr6 169621801 169621822 -12793420 + AT_rich Low_complexity Low_complexity 1 21 0 638 279 191 23 chr6 169622095 169622446 -12792796 - L3 LINE CR1 -630 947 538 2340 181 40 33 chr6 169622474 169622928 -12792314 + MSTB2 LTR MaLR 1 457 0 1275 108 0 0 chr6 169622945 169623111 -12792131 - AluSg/x SINE Alu -12 300 135 380 171 207 12 chr6 169623665 169623747 -12791495 - L2 LINE L2 -22 3291 3194 2410 53 0 56 chr6 169623844 169624167 -12791075 + AluY SINE Alu 2 306 -5 2087 77 3 50 chr6 169624249 169624548 -12790694 + AluSq SINE Alu 3 287 -26 261 0 0 0 chr6 169624559 169624588 -12790654 + (CCA)n Simple_repeat Simple_repeat 3 31 0 325 337 55 25 chr6 169624668 169624831 -12790411 + MIR SINE MIR 88 255 -7 567 272 94 11 chr6 169626298 169626478 -12788764 + MIR SINE MIR 44 238 -24 190 291 162 54 chr6 169626654 169626802 -12788440 - L2 LINE L2 -235 3037 2874 496 237 124 27 chr6 169626862 169627048 -12788194 - MLT1L LTR MaLR -2 613 410 2327 86 0 0 chr6 169627368 169627669 -12787573 - AluSc SINE Alu -8 301 1 313 343 54 18 chr6 169627695 169627861 -12787381 + L2 LINE L2 2152 2323 -991 1001 244 91 81 chr6 169627870 169628615 -12786627 - L2 LINE L2 -4 3309 2558 232 278 183 16 chr6 169628687 169628813 -12786429 - L2 LINE L2 -724 2590 2444 248 0 31 0 chr6 169628876 169628908 -12786334 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2117 126 3 3 chr6 169628993 169629295 -12785947 - AluSq SINE Alu -11 302 1 2513 289 128 2 chr6 169629982 169630863 -12784379 - L2 LINE L2 -861 2453 1462 574 309 9 52 chr6 169630901 169631111 -12784131 - MIR SINE MIR -30 232 32 291 335 109 64 chr6 169631626 169631676 -12783566 + L2 LINE L2 2995 3041 -231 2403 81 3 3 chr6 169631676 169631974 -12783268 - AluSp SINE Alu -15 298 1 291 335 109 64 chr6 169631974 169632189 -12783053 + L2 LINE L2 3041 3272 0 2554 155 33 28 chr6 169632302 169632551 -12782691 - MSTA LTR MaLR 0 428 175 2372 99 0 6 chr6 169632551 169632863 -12782379 + AluSx SINE Alu 1 310 -2 2554 155 33 28 chr6 169632863 169633039 -12782203 - MSTA LTR MaLR -253 175 1 1321 290 117 33 chr6 169633070 169634083 -12781159 - L2 LINE L2 -1 3312 2203 579 312 34 17 chr6 169634120 169634354 -12780888 - L2 LINE L2 -1308 2006 1769 2084 124 3 13 chr6 169634555 169634861 -12780381 + AluSx SINE Alu 1 303 -9 245 269 52 67 chr6 169635015 169635149 -12780093 + MIR SINE MIR 21 99 -109 33 25 0 0 chr6 169635236 169635276 -12779966 + AT_rich Low_complexity Low_complexity 1 40 0 771 86 0 0 chr6 169635819 169635936 -12779306 + (TTCC)n Simple_repeat Simple_repeat 2 118 0 283 189 14 14 chr6 169635940 169636014 -12779228 + CT-rich Low_complexity Low_complexity 1 74 0 933 186 0 12 chr6 169636021 169636182 -12779060 - AluJb SINE Alu -32 280 122 968 128 11 33 chr6 169636191 169636209 -12779033 - LTR24C LTR ERV1 -31 604 587 1452 69 0 0 chr6 169636209 169636384 -12778858 + AluY SINE Alu 128 302 -9 968 128 11 33 chr6 169636384 169636545 -12778697 - LTR24C LTR ERV1 -48 587 429 665 324 45 85 chr6 169637154 169637513 -12777729 - L2 LINE L2 -15 3257 2918 1964 155 0 3 chr6 169637513 169637817 -12777425 + AluJb SINE Alu 3 305 -7 665 324 45 85 chr6 169637817 169637905 -12777337 - L2 LINE L2 -354 2918 2828 2307 115 0 6 chr6 169638197 169638509 -12776733 + AluSx SINE Alu 1 310 -2 263 299 67 103 chr6 169638553 169638911 -12776331 + HAL1b LINE L1 338 682 -666 834 144 15 15 chr6 169639298 169639430 -12775812 - FLAM_C SINE Alu 0 133 2 1796 174 150 51 chr6 169639889 169640342 -12774900 - MLT2B1 LTR ERVL -22 498 1 1033 226 18 5 chr6 169640342 169640562 -12774680 - MLT1G LTR MaLR -54 536 314 434 217 11 11 chr6 169640565 169640657 -12774585 - MLT1G LTR MaLR -485 105 14 239 228 140 53 chr6 169640679 169640720 -12774522 + L1ME4a LINE L1 5995 6031 -90 2775 146 19 32 chr6 169640720 169641193 -12774049 + MLT1C LTR MaLR 1 467 0 239 228 140 53 chr6 169641193 169641265 -12773977 + L1ME4a LINE L1 6031 6118 -3 329 119 34 25 chr6 169641724 169641842 -12773400 + (TA)n Simple_repeat Simple_repeat 1 119 0 237 33 0 0 chr6 169641862 169641892 -12773350 + (GA)n Simple_repeat Simple_repeat 1 30 0 1518 184 48 7 chr6 169641894 169642043 -12773199 - AluJo SINE Alu -30 282 116 180 0 0 0 chr6 169642043 169642063 -12773179 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1518 184 48 7 chr6 169642063 169642184 -12773058 - AluJo SINE Alu -196 116 1 1152 239 151 17 chr6 169642209 169642324 -12772918 + MER69 DNA AcHobo 170 268 -2258 2209 167 8 11 chr6 169642324 169642690 -12772552 - MLT1A1 LTR MaLR 0 365 1 1152 239 151 17 chr6 169642690 169642925 -12772317 + MER69 DNA AcHobo 268 567 -1959 * 1539 222 71 34 chr6 169642924 169643420 -12771822 + MER69 DNA AcHobo 2010 2523 -3 357 311 146 7 chr6 169644219 169644370 -12770872 + MIR SINE MIR 20 191 -71 311 301 30 23 chr6 169644730 169644863 -12770379 - L2 LINE L2 -1 3312 3179 1114 141 135 10 chr6 169645397 169645589 -12769653 + AluJb SINE Alu 11 226 -86 276 169 0 0 chr6 169646296 169646355 -12768887 + LTR66 LTR ERVL 394 452 -158 2531 62 0 3 chr6 169646496 169646800 -12768442 - AluY SINE Alu -8 303 1 2814 252 72 44 chr6 169647074 169649031 -12766211 + L1ME LINE L1 20 2045 -4035 1945 227 57 48 chr6 169649016 169649512 -12765730 + L1M4 LINE L1 3764 4254 -1892 * 2200 155 99 10 chr6 169649512 169649905 -12765337 - MSTA LTR MaLR 0 428 1 10348 135 11 39 chr6 169649905 169651528 -12763714 - MSTA-int LTR MaLR 0 1580 3 2449 129 93 13 chr6 169651530 169651926 -12763316 - MSTA LTR MaLR 0 428 1 1945 227 57 48 chr6 169651926 169651982 -12763260 + L1M4 LINE L1 4254 4308 -1838 1708 155 17 14 chr6 169651982 169652279 -12762963 - AluJo SINE Alu -14 298 1 1945 227 57 48 chr6 169652279 169652394 -12762848 + L1M4 LINE L1 4308 4442 -1704 532 277 45 60 chr6 169652446 169652583 -12762659 - L1MC/D LINE L1 -775 5371 5233 757 140 0 84 chr6 169652583 169652726 -12762516 - FLAM_C SINE Alu 0 133 3 532 277 45 60 chr6 169652726 169652846 -12762396 - L1MC/D LINE L1 -913 5233 5113 2237 136 3 9 chr6 169652846 169653185 -12762057 + L1PB3 LINE L1 5818 6154 0 532 277 45 60 chr6 169653185 169653566 -12761676 - L1MC/D LINE L1 -1033 5113 4877 493 293 101 40 chr6 169654086 169654533 -12760709 - L1MC/D LINE L1 -1712 4434 3961 812 166 0 55 chr6 169654560 169654705 -12760537 + FLAM_C SINE Alu 2 138 -5 279 247 141 97 chr6 169654707 169655272 -12759970 - L1MC/D LINE L1 -2197 3949 3323 204 82 41 20 chr6 169655272 169655321 -12759921 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 279 247 141 97 chr6 169655321 169655691 -12759551 - L1MC/D LINE L1 -2823 3323 2971 2442 87 3 3 chr6 169656692 169657004 -12758238 + AluSx SINE Alu 1 312 0 535 255 43 0 chr6 169657151 169657292 -12757950 - MER45A DNA AcHobo 0 178 32 290 254 62 0 chr6 169657303 169657433 -12757809 + MLT1J LTR MaLR 348 485 -26 1971 143 40 77 chr6 169658712 169659117 -12756125 + MLT1B LTR MaLR 1 390 0 204 229 16 66 chr6 169659545 169659606 -12755636 + MIR SINE MIR 203 260 -2 2175 137 0 6 chr6 169659707 169660021 -12755221 - AluSx SINE Alu 0 312 1 2219 110 13 0 chr6 169662853 169663162 -12752080 - AluSq SINE Alu 0 313 1 242 310 35 0 chr6 169663312 169663399 -12751843 + GA-rich Low_complexity Low_complexity 2 91 0 207 0 0 0 chr6 169663939 169663962 -12751280 + (T)n Simple_repeat Simple_repeat 1 23 0 2031 124 3 3 chr6 169664067 169664358 -12750884 - AluSx SINE Alu -16 296 6 27 62 0 0 chr6 169664408 169664456 -12750786 + AT_rich Low_complexity Low_complexity 1 48 0 220 87 87 0 chr6 169668652 169668698 -12746544 + CT-rich Low_complexity Low_complexity 3 52 0 230 274 0 0 chr6 169670241 169670303 -12744939 - MIR SINE MIR -20 242 181 279 0 0 0 chr6 169670826 169670857 -12744385 + (T)n Simple_repeat Simple_repeat 1 31 0 968 285 53 9 chr6 169671466 169671789 -12743453 + L1ME3A LINE L1 5733 6069 -101 183 293 66 19 chr6 169671951 169672057 -12743185 - MIR SINE MIR -79 129 19 220 278 0 0 chr6 169672202 169672256 -12742986 + L2 LINE L2 3252 3305 -8 2386 108 0 0 chr6 169672425 169672730 -12742512 - AluSq SINE Alu -8 305 1 330 331 95 21 chr6 169674017 169674259 -12740983 + L2 LINE L2 2829 3088 -184 2354 93 0 3 chr6 169675767 169676077 -12739165 + AluSc SINE Alu 1 309 0 477 0 0 0 chr6 169677066 169677119 -12738123 + (TA)n Simple_repeat Simple_repeat 2 54 0 2324 90 3 0 chr6 169677119 169677407 -12737835 - AluSg1 SINE Alu -20 289 1 747 222 23 0 chr6 169677556 169677732 -12737510 - MER5A DNA MER1_type 0 189 10 3214 168 53 9 chr6 169677750 169678329 -12736913 - MER6A DNA MER2_type 0 605 1 288 0 0 0 chr6 169679071 169679103 -12736139 + (TG)n Simple_repeat Simple_repeat 2 33 0 522 263 45 19 chr6 169679221 169679377 -12735865 + MER5B DNA MER1_type 1 160 -18 742 259 166 19 chr6 169679655 169680072 -12735170 + MLT1H LTR MaLR 72 549 0 375 23 0 0 chr6 169680987 169681031 -12734211 + (CA)n Simple_repeat Simple_repeat 2 45 0 1674 192 31 41 chr6 169681031 169681414 -12733828 - MLT1B LTR MaLR -7 383 3 189 213 0 0 chr6 169681414 169681461 -12733781 + (TA)n Simple_repeat Simple_repeat 1 47 0 214 271 97 62 chr6 169683195 169683339 -12731903 + L2 LINE L2 3124 3272 0 2264 91 13 3 chr6 169683955 169684253 -12730989 - AluSc SINE Alu -8 301 1 450 274 68 7 chr6 169684395 169684541 -12730701 + MER5B DNA MER1_type 24 178 0 1235 211 71 44 chr6 169686245 169686610 -12728632 + MLT1C LTR MaLR 18 392 -75 1685 175 26 74 chr6 169687274 169687651 -12727591 + MLT1B LTR MaLR 22 380 -10 195 254 0 0 chr6 169687699 169687754 -12727488 - MIR SINE MIR -37 225 171 211 324 0 0 chr6 169688125 169688199 -12727043 + MIR SINE MIR 189 262 0 1319 305 81 13 chr6 169693673 169694287 -12720955 + ERVL LTR ERVL 4818 5473 -291 1278 256 193 24 chr6 169694601 169695258 -12719984 + LTR50 LTR ERVL 1 768 -27 1796 182 3 3 chr6 169695587 169695883 -12719359 - AluJb SINE Alu -16 296 1 21 0 0 0 chr6 169696041 169696062 -12719180 + AT_rich Low_complexity Low_complexity 1 21 0 319 321 28 39 chr6 169696100 169696560 -12718682 - L1MEd LINE L1 -861 1629 1094 865 136 0 8 chr6 169696560 169696692 -12718550 - AluSg SINE Alu -179 131 1 942 171 16 16 chr6 169696935 169697122 -12718120 - AluJb SINE Alu -5 307 121 578 252 64 50 chr6 169697292 169697510 -12717732 - MLT1L LTR MaLR -348 267 47 361 237 75 11 chr6 169698239 169698332 -12716910 - L2 LINE L2 -16 3297 3199 224 346 75 9 chr6 169699227 169699334 -12715908 - MIR SINE MIR -75 133 20 617 211 286 6 chr6 169699633 169699808 -12715434 - MER58A DNA MER1_type 0 224 1 1343 244 99 48 chr6 169699862 169700325 -12714917 - MLT1J LTR MaLR -2 509 23 198 91 0 0 chr6 169701278 169701311 -12713931 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 831 222 146 5 chr6 169701506 169701718 -12713524 + MLT1I LTR MaLR 163 404 -5 2048 148 3 7 chr6 169702172 169702477 -12712765 - AluSx SINE Alu -8 304 1 283 236 20 74 chr6 169703393 169703442 -12711800 - MIR SINE MIR -20 242 192 2002 149 3 0 chr6 169703442 169703744 -12711498 - AluJo SINE Alu -9 303 1 283 236 20 74 chr6 169703744 169703842 -12711400 - MIR SINE MIR -70 192 103 1900 129 0 0 chr6 169704754 169705009 -12710233 + AluSq SINE Alu 1 255 -58 186 332 72 43 chr6 169705664 169705872 -12709370 + MIR SINE MIR 48 261 -1 686 206 0 0 chr6 169706703 169706834 -12708408 + L1MB7 LINE L1 5957 6087 -97 495 235 30 42 chr6 169707416 169707582 -12707660 + MIR SINE MIR 52 215 -47 3643 202 50 34 chr6 169707735 169708548 -12706694 + LTR1B LTR ERV1 1 826 0 2349 141 5 8 chr6 169710920 169711296 -12703946 - THE1C LTR MaLR 0 375 1 243 301 183 9 chr6 169711444 169711663 -12703579 + L2 LINE L2 2476 2732 -582 2031 109 3 40 chr6 169714110 169714438 -12700804 - AluSq SINE Alu 0 313 1 2146 137 0 0 chr6 169714750 169715056 -12700186 - AluSx SINE Alu -6 306 1 2517 101 34 17 chr6 169715773 169716131 -12699111 - THE1B LTR MaLR 0 364 1 32 57 0 0 chr6 169716570 169716623 -12698619 + AT_rich Low_complexity Low_complexity 1 53 0 460 323 76 29 chr6 169716721 169717300 -12697942 - L1ME4a LINE L1 -182 5939 5334 2414 89 0 0 chr6 169719247 169719549 -12695693 - AluSx SINE Alu -10 302 1 331 277 18 27 chr6 169721919 169722031 -12693211 - Zaphod DNA AcHobo -15 4016 3906 514 301 46 9 chr6 169722329 169722548 -12692694 - MER115 DNA AcHobo -436 257 31 394 258 63 13 chr6 169722673 169722832 -12692410 + MER5A DNA MER1_type 1 167 -22 1712 175 42 42 chr6 169723204 169723582 -12691660 + MLT1B LTR MaLR 1 378 -12 202 360 58 14 chr6 169724075 169724214 -12691028 + L2 LINE L2 3112 3256 -16 245 235 34 101 chr6 169725355 169725474 -12689768 + L2 LINE L2 3159 3269 -3 1374 37 10 7 chr6 169725505 169725801 -12689441 + (TTTC)n Simple_repeat Simple_repeat 1 297 0 3529 110 36 2 chr6 169725807 169726335 -12688907 - L1PA13 LINE L1 -10 6153 5608 300 228 105 26 chr6 169729063 169729177 -12686065 - MLT1H LTR MaLR -415 134 12 219 204 19 19 chr6 169730517 169730571 -12684671 + GA-rich Low_complexity Low_complexity 2 55 0 601 248 46 64 chr6 169730722 169731109 -12684133 + HAL1b LINE L1 1186 1306 -42 4930 162 19 13 chr6 169731109 169731980 -12683262 - L1MC1 LINE L1 0 6333 5457 601 248 46 64 chr6 169731980 169732016 -12683226 + HAL1b LINE L1 1306 1341 -7 1109 121 6 0 chr6 169732190 169732364 -12682878 - MER5A DNA MER1_type 0 189 15 284 280 0 91 chr6 169733187 169733282 -12681960 + LTR16A1 LTR ERVL 328 407 -50 2655 109 5 8 chr6 169733282 169733658 -12681584 - THE1C LTR MaLR 0 375 1 284 280 0 91 chr6 169733658 169733705 -12681537 + LTR16A1 LTR ERVL 407 457 0 347 93 0 37 chr6 169735152 169735206 -12680036 - MLT2F LTR ERVL 0 663 612 313 125 57 0 chr6 169735208 169735296 -12679946 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 1679 225 141 45 chr6 169735345 169735843 -12679399 - MLT2F LTR ERVL -49 614 55 2372 113 39 11 chr6 169735843 169736207 -12679035 - THE1C LTR MaLR -1 374 1 1679 225 141 45 chr6 169736207 169736268 -12678974 - MLT2F LTR ERVL -608 55 1 270 281 67 12 chr6 169736467 169736631 -12678611 - L1ME4a LINE L1 -209 5912 5740 1253 195 24 0 chr6 169736631 169736841 -12678401 - AluJb SINE Alu -11 301 87 592 197 22 0 chr6 169737129 169737266 -12677976 + MER104 DNA Tc2 35 174 -6 1577 188 7 28 chr6 169737478 169737766 -12677476 - AluJo SINE Alu -20 292 11 192 280 75 28 chr6 169737915 169738022 -12677220 - L2 LINE L2 -14 3258 3147 900 161 7 0 chr6 169738431 169738574 -12676668 - MSTD LTR MaLR -5 391 248 261 350 110 27 chr6 169738844 169739295 -12675947 - L2 LINE L2 -591 2723 2222 2342 125 117 5 chr6 169739295 169739680 -12675562 - MSTA LTR MaLR 0 428 1 261 350 110 27 chr6 169739680 169739745 -12675497 - L2 LINE L2 -1092 2222 2164 3385 206 6 5 chr6 169739819 169740464 -12674778 + MER82 DNA MER2_type 1 646 -7 2337 130 62 33 chr6 169740477 169740994 -12674248 + MLT2A2 LTR ERVL 1 554 0 250 257 40 0 chr6 169741219 169741293 -12673949 - MLT1J1 LTR MaLR -15 431 355 576 252 43 75 chr6 169741328 169741590 -12673652 - MLT1J2 LTR MaLR -148 302 67 * 603 203 0 0 chr6 169741584 169741702 -12673540 - MLT1D LTR MaLR -7 498 381 2450 82 0 0 chr6 169742081 169742375 -12672867 - AluSg SINE Alu -16 294 1 247 342 0 0 chr6 169743230 169743306 -12671936 + MLT1K LTR MaLR 3 78 -510 756 167 40 7 chr6 169744827 169744977 -12670265 + HsTC2 DNA Tc2 408 562 -1336 1093 274 77 77 chr6 169745028 169745764 -12669478 - L1MEd LINE L1 -2086 4043 3308 2129 121 3 16 chr6 169745764 169746079 -12669163 - AluSq SINE Alu -2 311 1 1093 274 77 77 chr6 169746079 169746861 -12668381 - L1MEd LINE L1 -2820 3309 2525 2241 125 0 6 chr6 169747056 169747367 -12667875 + AluSx SINE Alu 1 309 -3 744 279 81 31 chr6 169747609 169748399 -12666843 - L1MEd LINE L1 -4579 1731 861 409 265 10 0 chr6 169748516 169748618 -12666624 - L1MEd LINE L1 -5420 699 597 1902 151 3 7 chr6 169748661 169748959 -12666283 - AluSx SINE Alu -14 298 2 228 353 17 8 chr6 169749134 169749253 -12665989 + L2 LINE L2 2598 2717 -597 230 152 43 0 chr6 169749707 169749753 -12665489 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 2071 135 138 26 chr6 169750554 169750939 -12664303 - MSTA LTR MaLR 0 428 1 200 387 0 0 chr6 169751108 169751170 -12664072 + L2 LINE L2 3202 3263 -9 638 62 0 0 chr6 169751335 169751415 -12663827 + AluSx SINE Alu 1 80 -232 1580 91 17 17 chr6 169751507 169751739 -12663503 + AluSx SINE Alu 71 302 -10 919 179 13 0 chr6 169752069 169752225 -12663017 - AluJb SINE Alu -20 292 135 890 108 151 0 chr6 169752354 169752493 -12662749 - MSTA LTR MaLR 0 428 269 2041 198 76 19 chr6 169752671 169753155 -12662087 + MLT1F LTR MaLR 1 512 -30 2362 123 85 15 chr6 169753757 169754157 -12661085 - MSTA LTR MaLR 0 428 1 427 271 8 17 chr6 169754228 169754346 -12660896 - L2 LINE L2 -13 3259 3143 251 292 99 25 chr6 169755210 169755371 -12659871 + MIR SINE MIR 20 192 -70 372 333 13 26 chr6 169756258 169756411 -12658831 + L2 LINE L2 3102 3252 -20 229 203 165 76 chr6 169757101 169757180 -12658062 + MIR SINE MIR 108 193 -69 24 0 0 0 chr6 169757204 169757228 -12658014 + AT_rich Low_complexity Low_complexity 1 24 0 374 296 63 26 chr6 169758553 169758854 -12656388 + L2 LINE L2 2469 2869 -445 * 406 228 22 11 chr6 169758834 169758926 -12656316 + L2 LINE L2 3221 3313 0 885 240 192 43 chr6 169759288 169759726 -12655516 - MLT1D LTR MaLR 0 505 3 1877 142 0 19 chr6 169760042 169760360 -12654882 + AluJb SINE Alu 1 312 0 249 241 9 37 chr6 169761188 169761296 -12653946 + C-rich Low_complexity Low_complexity 6 110 0 25 0 0 0 chr6 169761663 169761688 -12653554 + GC_rich Low_complexity Low_complexity 1 25 0 5390 200 71 16 chr6 169763810 169765143 -12650099 + Charlie1a DNA MER1_type 50 1455 0 937 185 107 19 chr6 169765619 169765824 -12649418 - MLT1D LTR MaLR 0 505 283 360 161 0 0 chr6 169765819 169765875 -12649367 - MLT1D LTR MaLR -449 56 1 * 25 90 0 0 chr6 169766893 169766960 -12648282 + AT_rich Low_complexity Low_complexity 1 67 0 328 314 67 0 chr6 169767208 169767313 -12647929 - MIR SINE MIR -64 198 87 182 234 21 106 chr6 169767880 169767974 -12647268 - MIR3 SINE MIR -26 182 97 560 255 33 20 chr6 169768051 169768204 -12647038 + MIR3 SINE MIR 47 201 -7 213 39 0 0 chr6 169768220 169768246 -12646996 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 980 242 118 16 chr6 169769892 169769950 -12645292 - L1MD1 LINE L1 -1 6241 6190 2140 177 75 0 chr6 169769950 169770362 -12644880 + MER65A LTR ERV1 3 445 0 980 242 118 16 chr6 169770362 169770625 -12644617 - L1MD1 LINE L1 -52 6190 5887 965 290 77 49 chr6 169770759 169771128 -12644114 + L2 LINE L2 2571 2928 -385 2058 108 13 13 chr6 169771128 169771434 -12643808 + AluSx SINE Alu 1 306 -6 965 290 77 49 chr6 169771434 169771764 -12643478 + L2 LINE L2 2928 3313 0 1369 188 208 40 chr6 169771978 169772377 -12642865 - MLT1C LTR MaLR 0 467 2 5692 89 5 7 chr6 169772418 169773189 -12642053 - L1PA10 LINE L1 0 6168 5399 207 231 19 0 chr6 169773387 169773439 -12641803 - L2 LINE L2 -19 3253 3201 204 200 0 0 chr6 169775076 169775116 -12640126 - MIR SINE MIR -73 189 150 208 317 73 0 chr6 169775259 169775341 -12639901 + L2 LINE L2 1967 2054 -1260 979 247 86 67 chr6 169775390 169775811 -12639431 - L2 LINE L2 -1003 2311 1883 561 246 78 11 chr6 169775949 169776128 -12639114 + MIR SINE MIR 8 198 -64 353 266 0 0 chr6 169776154 169776233 -12639009 + L2 LINE L2 3194 3272 0 559 276 56 85 chr6 169777357 169777770 -12637472 - MLT1J LTR MaLR -2 509 109 2463 57 0 13 chr6 169780314 169780629 -12634613 - AluY SINE Alu 0 311 1 2203 109 0 13 chr6 169780691 169781003 -12634239 - AluSx SINE Alu -4 308 1 242 252 97 84 chr6 169781067 169781222 -12634020 - MLT1K LTR MaLR -30 558 402 2106 120 150 5 chr6 169782845 169783219 -12632023 - MSTA LTR MaLR 0 428 1 237 250 62 0 chr6 169783651 169783715 -12631527 - L2 LINE L2 0 3313 3246 1548 164 3 49 chr6 169783824 169784129 -12631113 - AluJb SINE Alu -21 291 1 220 298 214 0 chr6 169784569 169784700 -12630542 - L2 LINE L2 -954 2360 2202 392 234 57 99 chr6 169785022 169785214 -12630028 + Charlie8 DNA MER1_type 2 185 -2232 369 266 149 7 chr6 169786092 169786246 -12628996 - L3b LINE CR1 -192 1391 1216 186 43 0 0 chr6 169794174 169794197 -12621045 + (CAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 169794263 169794284 -12620958 + AT_rich Low_complexity Low_complexity 1 21 0 1827 172 28 46 chr6 169794814 169795209 -12620033 - MLT1B LTR MaLR -2 388 1 414 279 149 7 chr6 169795537 169795691 -12619551 - L3b LINE CR1 -200 1383 1208 235 385 44 0 chr6 169797459 169797594 -12617648 + MIR3 SINE MIR 40 180 -28 323 267 86 26 chr6 169798344 169798460 -12616782 + L2 LINE L2 3191 3313 0 2216 93 3 6 chr6 169800790 169801101 -12614141 - AluSp SINE Alu -1 312 3 232 260 0 0 chr6 169801729 169801779 -12613463 + CT-rich Low_complexity Low_complexity 2 51 0 210 311 50 8 chr6 169802243 169802362 -12612880 + MIR SINE MIR 21 144 -118 202 204 0 41 chr6 169802929 169802978 -12612264 + MER5A DNA MER1_type 140 186 -3 233 236 337 0 chr6 169803749 169803838 -12611404 - MIR SINE MIR -119 143 25 286 294 88 46 chr6 169804835 169805013 -12610229 + MIR SINE MIR 9 195 -67 3472 66 0 35 chr6 169807528 169807925 -12607317 - MLT2A1 LTR ERVL -8 436 55 2356 85 0 0 chr6 169807925 169808218 -12607024 - AluSx SINE Alu -19 293 1 3472 66 0 35 chr6 169808218 169808272 -12606970 - MLT2A1 LTR ERVL -389 55 1 2101 125 0 3 chr6 169811003 169811298 -12603944 - AluSx SINE Alu -18 294 1 201 385 10 0 chr6 169811488 169811584 -12603658 + MIR SINE MIR 123 219 -43 326 365 34 6 chr6 169812435 169812613 -12602629 + MIR3 SINE MIR 21 203 -5 1033 211 81 9 chr6 169812665 169812888 -12602354 + MER8 DNA MER2_type 1 239 0 2483 78 0 7 chr6 169814942 169815251 -12599991 - AluY SINE Alu -4 307 1 270 132 0 0 chr6 169817122 169817175 -12598067 + (CA)n Simple_repeat Simple_repeat 2 54 0 1501 126 31 0 chr6 169819671 169819894 -12595348 + MER30 DNA MER1_type 1 230 0 21 0 0 0 chr6 169820340 169820361 -12594881 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 169820501 169820531 -12594711 + AT_rich Low_complexity Low_complexity 1 30 0 2027 140 7 3 chr6 169820623 169820931 -12594311 - AluSx SINE Alu -3 309 1 25 0 0 0 chr6 169821010 169821035 -12594207 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 169822179 169822209 -12593033 + AT_rich Low_complexity Low_complexity 1 30 0 705 233 0 35 chr6 169822336 169822508 -12592734 + L1PB4 LINE L1 5991 6156 0 332 279 143 65 chr6 169824960 169825368 -12589874 + L1M2 LINE L1 530 1008 -5841 21 36 0 0 chr6 169825427 169825455 -12589787 + GC_rich Low_complexity Low_complexity 1 28 0 440 296 89 15 chr6 169826203 169826406 -12588836 - MIR SINE MIR -16 246 29 196 239 0 0 chr6 169827111 169827157 -12588085 + L2 LINE L2 3267 3312 -1 22 0 0 0 chr6 169828853 169828875 -12586367 + AT_rich Low_complexity Low_complexity 1 22 0 466 193 290 0 chr6 169828941 169829086 -12586156 - MER5A DNA MER1_type 0 189 3 320 250 54 48 chr6 169829283 169829451 -12585791 - L1ME4a LINE L1 -19 6102 5934 258 255 27 18 chr6 169829527 169829630 -12585612 - L1ME4a LINE L1 -309 5812 5706 2316 56 42 0 chr6 169829739 169830023 -12585219 - AluY SINE Alu -15 296 1 1236 194 60 100 chr6 169830555 169830905 -12584337 + MER58B DNA MER1_type 2 337 -4 289 274 11 28 chr6 169831311 169831490 -12583752 + (CCA)n Simple_repeat Simple_repeat 2 177 0 429 161 12 0 chr6 169831772 169831853 -12583389 + MER53 DNA DNA 95 176 -13 535 250 47 0 chr6 169833376 169833524 -12581718 - L1MA10 LINE L1 0 6334 6180 4014 78 6 4 chr6 169833613 169834127 -12581115 + L1PA10 LINE L1 5653 6167 -1 2701 150 63 2 chr6 169834151 169834610 -12580632 - L1MB7 LINE L1 -7 6177 5691 28 0 0 0 chr6 169835081 169835109 -12580133 + AT_rich Low_complexity Low_complexity 1 28 0 249 313 50 66 chr6 169836378 169836487 -12578755 + MIR SINE MIR 31 137 -125 2373 114 15 63 chr6 169836487 169836881 -12578361 - THE1C LTR MaLR 0 375 1 249 313 50 66 chr6 169836881 169836953 -12578289 + MIR SINE MIR 137 209 -53 202 343 9 37 chr6 169838040 169838148 -12577094 + MIR SINE MIR 31 135 -127 950 98 8 8 chr6 169838149 169838281 -12576961 - THE1C LTR MaLR 0 375 244 280 317 33 33 chr6 169838387 169838507 -12576735 - MLT1J LTR MaLR -235 276 157 33261 102 11 64 chr6 169838608 169844852 -12570390 - L1PA6 LINE L1 -240 5914 12 8373 214 51 48 chr6 169844913 169845903 -12569339 - L1ME1 LINE L1 -18 6148 5162 2175 88 51 0 chr6 169845903 169846199 -12569043 - AluY SINE Alu 0 311 1 8373 214 51 48 chr6 169846199 169848499 -12566743 - L1ME1 LINE L1 -1004 5162 2850 228 325 57 25 chr6 169848542 169848699 -12566543 + L1ME LINE L1 320 481 -5589 297 283 9 112 chr6 169848700 169848984 -12566258 + L1ME LINE L1 387 651 -5432 340 313 138 31 chr6 169849597 169849987 -12565255 - L1ME LINE L1 -312 5809 5378 456 233 0 10 chr6 169850404 169850507 -12564735 - MER94 DNA DNA -1 133 32 22 0 0 0 chr6 169850510 169850532 -12564710 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 169850552 169850573 -12564669 + AT_rich Low_complexity Low_complexity 1 21 0 416 299 152 5 chr6 169850606 169850830 -12564412 - MIR SINE MIR -2 260 4 425 285 125 25 chr6 169850921 169851121 -12564121 + MLT1J LTR MaLR 117 336 -175 2346 201 50 8 chr6 169851455 169851933 -12563309 - MLT1D LTR MaLR -2 503 6 181 243 0 0 chr6 169852513 169852550 -12562692 - MIR SINE MIR -1 261 225 * 786 256 113 4 chr6 169852548 169852822 -12562420 + L2 LINE L2 2450 2753 -561 1565 181 73 0 chr6 169852827 169853114 -12562128 + MER1B DNA MER1_type 32 339 0 1385 251 114 17 chr6 169853144 169853730 -12561512 - MER76 LTR ERV -2 686 44 1014 159 105 126 chr6 169853769 169854189 -12561053 - Zaphod DNA AcHobo -22 4009 3599 2641 222 72 66 chr6 169854190 169855155 -12560087 - Zaphod DNA AcHobo -3040 991 22 209 320 177 20 chr6 169855155 169855302 -12559940 + L2 LINE L2 2941 3110 -203 * 339 248 88 0 chr6 169855279 169855386 -12559856 - MIR SINE MIR -81 127 52 272 349 0 0 chr6 169855388 169855471 -12559771 + MIR SINE MIR 167 249 -13 2042 110 0 48 chr6 169855479 169855789 -12559453 - AluSq SINE Alu -18 295 1 232 218 103 0 chr6 169857475 169857553 -12557689 + L1MC4 LINE L1 6618 6703 -1339 * 247 276 0 51 chr6 169857541 169857639 -12557603 + L1MC4 LINE L1 6614 6706 -1336 305 287 0 43 chr6 169857668 169857762 -12557480 - L1MC4 LINE L1 -1339 6703 6614 687 219 0 0 chr6 169857771 169857949 -12557293 + (TA)n Simple_repeat Simple_repeat 1 178 0 269 189 21 74 chr6 169857958 169858053 -12557189 + L1MC4 LINE L1 6614 6703 -1339 596 176 46 9 chr6 169858060 169858168 -12557074 + Tigger7 DNA MER2_type 2380 2491 0 * 2144 207 9 8 chr6 169858168 169858619 -12556623 - MER54B LTR ERVL -276 517 1 372 43 0 0 chr6 169858825 169858871 -12556371 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1861 53 4 0 chr6 169858871 169859099 -12556143 - L1PA7 LINE L1 -18 6136 5908 1478 140 106 0 chr6 169860092 169860328 -12554914 - AluSx SINE Alu -12 300 40 758 301 77 33 chr6 169860621 169861160 -12554082 + MLT1K LTR MaLR 10 588 0 206 294 0 0 chr6 169861321 169861372 -12553870 + G-rich Low_complexity Low_complexity 4 54 0 3797 78 22 16 chr6 169861823 169862609 -12552633 + L1PA8A LINE L1 4975 5764 -363 582 111 0 44 chr6 169862609 169862695 -12552547 + L1PA8A LINE L1 6044 6129 -2 335 45 0 0 chr6 169863229 169863273 -12551969 + L1MA4A LINE L1 6026 6069 -234 2454 89 0 6 chr6 169864196 169864510 -12550732 + AluSx SINE Alu 1 312 0 462 276 31 25 chr6 169864816 169864979 -12550263 - LTR33 LTR ERVL -14 507 344 364 305 143 0 chr6 169865125 169865279 -12549963 - LTR33 LTR ERVL -345 176 1 2598 189 91 73 chr6 169866087 169866801 -12548441 - LTR8A LTR ERV1 0 727 1 808 192 69 39 chr6 169867230 169867433 -12547809 + MLT1C LTR MaLR 1 209 -258 402 242 42 142 chr6 169869263 169869623 -12545619 + L2 LINE L2 2986 3309 -4 3914 123 122 2 chr6 169871371 169872012 -12543230 + MER72 LTR ERV1 5 722 0 1773 98 106 0 chr6 169874734 169874988 -12540254 - AluSq SINE Alu -11 302 22 396 299 124 11 chr6 169874994 169875171 -12540071 - MER117 DNA MER1_type 0 197 1 212 319 32 11 chr6 169877356 169877450 -12537792 + MER5B DNA MER1_type 44 139 -39 246 260 13 39 chr6 169877510 169877587 -12537655 + L2 LINE L2 3198 3272 0 3329 96 14 0 chr6 169877905 169878344 -12536898 + MLT2A2 LTR ERVL 1 445 -8 855 231 58 5 chr6 169879256 169879464 -12535778 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr6 169880386 169880407 -12534835 + (A)n Simple_repeat Simple_repeat 1 21 0 1476 103 40 9 chr6 169881596 169881819 -12533423 + MER30 DNA MER1_type 1 230 0 21 0 0 0 chr6 169882264 169882285 -12532957 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 169882424 169882456 -12532786 + AT_rich Low_complexity Low_complexity 1 32 0 2058 136 7 3 chr6 169882548 169882856 -12532386 - AluSx SINE Alu -3 309 1 25 0 0 0 chr6 169882935 169882960 -12532282 + AT_rich Low_complexity Low_complexity 1 25 0 693 238 0 35 chr6 169884260 169884432 -12530810 + L1PB4 LINE L1 5991 6156 0 2864 7 0 0 chr6 169884975 169885277 -12529965 + AluYb8 SINE Alu 1 302 -16 388 296 89 15 chr6 169888442 169888645 -12526597 - MIR SINE MIR -16 246 29 184 239 0 0 chr6 169889350 169889396 -12525846 + L2 LINE L2 3267 3312 -1 22 0 0 0 chr6 169891092 169891114 -12524128 + AT_rich Low_complexity Low_complexity 1 22 0 420 193 290 0 chr6 169891180 169891325 -12523917 - MER5A DNA MER1_type 0 189 3 306 250 54 48 chr6 169891522 169891690 -12523552 - L1ME4a LINE L1 -19 6102 5934 256 255 27 18 chr6 169891766 169891869 -12523373 - L1ME4a LINE L1 -309 5812 5706 2344 56 42 0 chr6 169891978 169892262 -12522980 - AluY SINE Alu -15 296 1 1197 196 58 101 chr6 169892794 169893141 -12522101 + MER58B DNA MER1_type 2 333 -8 289 274 11 28 chr6 169893550 169893729 -12521513 + (CCA)n Simple_repeat Simple_repeat 2 177 0 420 161 12 0 chr6 169894011 169894092 -12521150 + MER53 DNA DNA 95 176 -13 528 250 47 0 chr6 169895615 169895763 -12519479 - L1MA10 LINE L1 0 6334 6180 3822 78 6 4 chr6 169895852 169896366 -12518876 + L1PA10 LINE L1 5653 6167 -1 2566 148 63 2 chr6 169896390 169896849 -12518393 - L1MB7 LINE L1 -7 6177 5691 28 0 0 0 chr6 169897320 169897348 -12517894 + AT_rich Low_complexity Low_complexity 1 28 0 199 313 50 66 chr6 169898617 169898726 -12516516 + MIR SINE MIR 31 137 -125 2228 114 15 63 chr6 169898726 169899120 -12516122 - THE1C LTR MaLR 0 375 1 199 313 50 66 chr6 169899120 169899192 -12516050 + MIR SINE MIR 137 209 -53 183 184 0 0 chr6 169900877 169900915 -12514327 + T-rich Low_complexity Low_complexity 5 42 0 1699 169 39 3 chr6 169901001 169901285 -12513957 + AluJo SINE Alu 1 294 -18 2331 92 0 0 chr6 169901846 169902138 -12513104 - AluSc SINE Alu -17 292 1 204 67 0 0 chr6 169902444 169902474 -12512768 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 490 196 78 0 chr6 169903799 169903901 -12511341 - L1P LINE L1 -3154 2992 2883 244 184 0 26 chr6 169905134 169905210 -12510032 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 306 265 112 10 chr6 169905278 169905376 -12509866 + MIR SINE MIR 34 141 -67 766 346 46 65 chr6 169907755 169908038 -12507204 + L2 LINE L2 2092 2379 -935 1838 67 0 9 chr6 169908038 169908263 -12506979 + AluY SINE Alu 80 302 -9 766 346 46 65 chr6 169908263 169908808 -12506434 + L2 LINE L2 2379 2904 -410 410 212 0 0 chr6 169909055 169909140 -12506102 + L2 LINE L2 3229 3313 0 354 254 40 64 chr6 169909143 169909316 -12505926 + MIR SINE MIR 84 252 -10 583 209 181 33 chr6 169910835 169911017 -12504225 + MER63A DNA MER1_type 2 210 0 263 319 14 0 chr6 169911767 169911836 -12503406 - L2 LINE L2 -81 3191 3122 347 344 0 0 chr6 169912524 169912649 -12502593 + MARNA DNA Mariner 275 399 -187 1664 170 14 34 chr6 169915349 169915643 -12499599 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr6 169916117 169916138 -12499104 + AT_rich Low_complexity Low_complexity 1 21 0 245 306 45 22 chr6 169916825 169916959 -12498283 + L1ME1 LINE L1 6029 6165 -1 2338 82 0 0 chr6 169917011 169917336 -12497906 + AluY SINE Alu 1 311 0 1240 94 0 0 chr6 169917336 169917509 -12497733 + AluSp SINE Alu 134 306 0 2127 260 8 28 chr6 169917599 169918210 -12497032 - L1ME1 LINE L1 -5 6161 5563 2319 79 0 0 chr6 169919181 169919459 -12495783 + AluSg SINE Alu 1 278 -32 262 0 26 26 chr6 169919461 169919500 -12495742 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 982 97 8 0 chr6 169919992 169920116 -12495126 + AluSq/x SINE Alu 1 125 -188 201 81 27 27 chr6 169920736 169920773 -12494469 + (TC)n Simple_repeat Simple_repeat 2 38 0 271 307 55 8 chr6 169921118 169921245 -12493997 - MIR SINE MIR -49 213 81 853 161 24 0 chr6 169922074 169922374 -12492868 + (TCTA)n Simple_repeat Simple_repeat 1 307 0 764 194 4 8 chr6 169922400 169922649 -12492593 + (TCTA)n Simple_repeat Simple_repeat 1 248 0 207 0 0 0 chr6 169922650 169922673 -12492569 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1186 74 6 6 chr6 169922696 169922872 -12492370 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 198 0 0 0 chr6 169922899 169922921 -12492321 + (TATG)n Simple_repeat Simple_repeat 3 24 0 1000 109 18 0 chr6 169922924 169923089 -12492153 + (TCCA)n Simple_repeat Simple_repeat 2 169 0 525 71 0 0 chr6 169923088 169923158 -12492084 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 * 1455 187 16 0 chr6 169923160 169923411 -12491831 - MLT2D LTR ERVL -58 356 102 1582 151 0 0 chr6 169923413 169923645 -12491597 + AluJo SINE Alu 1 232 -80 292 183 197 0 chr6 169923835 169923906 -12491336 - MLT2D LTR ERVL -329 85 1 186 133 0 0 chr6 169925526 169925556 -12489686 + (TA)n Simple_repeat Simple_repeat 2 31 0 2282 97 3 0 chr6 169926086 169926374 -12488868 - AluSp SINE Alu -24 289 1 2206 114 57 20 chr6 169927070 169927421 -12487821 - THE1B LTR MaLR 0 364 1 404 315 190 20 chr6 169927852 169928204 -12487038 + L3 LINE CR1 1041 1452 -125 403 277 23 73 chr6 169928242 169928419 -12486823 + MER58C DNA MER1_type 37 204 -11 2315 103 0 6 chr6 169928427 169928739 -12486503 + AluSg SINE Alu 1 310 0 187 329 7 87 chr6 169930434 169930583 -12484659 - L2 LINE L2 -4 3309 3173 21 71 0 0 chr6 169931152 169931194 -12484048 + AT_rich Low_complexity Low_complexity 1 42 0 318 294 32 32 chr6 169931232 169931358 -12483884 + L2 LINE L2 3188 3313 0 663 76 23 47 chr6 169932165 169932337 -12482905 + (TCTA)n Simple_repeat Simple_repeat 1 168 0 715 66 33 49 chr6 169932353 169932536 -12482706 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 255 211 11 89 chr6 169932859 169932921 -12482321 - LTR33 LTR ERVL -15 506 452 2378 156 122 15 chr6 169932921 169933389 -12481853 - LTR44 LTR ERV1 -1 518 1 255 211 11 89 chr6 169933389 169933416 -12481826 - LTR33 LTR ERVL -69 452 424 573 283 17 56 chr6 169933545 169933778 -12481464 - LTR33 LTR ERVL -297 224 1 232 258 56 11 chr6 169933957 169934046 -12481196 - MIR SINE MIR -70 138 46 1737 87 4 4 chr6 169935108 169935338 -12479904 - AluSq SINE Alu -1 312 83 529 157 24 0 chr6 169935568 169935651 -12479591 - AluSq SINE Alu -227 86 2 897 147 45 13 chr6 169936116 169936272 -12478970 - MER54B LTR ERVL -2 791 631 2469 75 0 0 chr6 169936696 169936990 -12478252 - AluSg SINE Alu -3 307 14 452 186 16 65 chr6 169937819 169937943 -12477299 + MIR3 SINE MIR 44 161 -47 2036 251 56 7 chr6 169942403 169942956 -12472286 + L1MEc LINE L1 36 615 -5781 * 4957 220 56 14 chr6 169942955 169944363 -12470879 + L1MEc LINE L1 2243 3710 -2505 333 261 0 96 chr6 169944856 169944971 -12470271 - MER81 DNA DNA -10 104 1 531 293 37 5 chr6 169945567 169945755 -12469487 + MIR SINE MIR 48 241 -21 8604 97 50 15 chr6 169946170 169947210 -12468032 - HSMAR1 DNA Mariner 0 1287 195 2246 103 0 0 chr6 169947210 169947492 -12467750 + AluSg SINE Alu 6 287 -23 8604 97 50 15 chr6 169947492 169947686 -12467556 - HSMAR1 DNA Mariner -1092 195 9 407 235 111 1 chr6 169947696 169947920 -12467322 + MER57B LTR ERV1 131 403 0 247 303 34 67 chr6 169950124 169950243 -12464999 - MIR3 SINE MIR -36 172 58 538 261 32 45 chr6 169950708 169950865 -12464377 - MLT1H LTR MaLR 0 595 441 596 256 68 14 chr6 169950887 169951106 -12464136 - MLT1H LTR MaLR -244 305 75 264 320 52 52 chr6 169952563 169952735 -12462507 + MIR SINE MIR 13 184 -78 681 37 0 0 chr6 169952803 169952884 -12462358 - L1P LINE L1 -2088 4058 3978 2187 124 0 3 chr6 169953010 169953317 -12461925 - AluSx SINE Alu -6 306 1 3246 263 78 65 chr6 169955259 169955899 -12459343 + L1MCc LINE L1 1 631 -6310 2358 82 0 0 chr6 169955899 169956212 -12459030 + AluY SINE Alu 1 313 0 3246 263 78 65 chr6 169956212 169957668 -12457574 + L1MCc LINE L1 631 2312 -4629 1954 149 6 19 chr6 169957668 169957984 -12457258 + AluSx SINE Alu 1 312 0 3246 263 78 65 chr6 169957984 169958458 -12456784 + L1MCc LINE L1 2312 2778 -4163 562 166 158 7 chr6 169958461 169958600 -12456642 + L1ME1 LINE L1 6001 6160 -6 191 293 43 121 chr6 169959735 169959875 -12455367 + L2 LINE L2 3108 3236 -36 349 244 35 52 chr6 169960016 169960131 -12455111 + MIR SINE MIR 34 146 -116 15113 182 42 14 chr6 169960294 169962616 -12452626 + L1MA4A LINE L1 2 2258 -4747 1934 164 0 3 chr6 169962616 169962909 -12452333 + AluSx SINE Alu 1 292 -20 245 29 0 29 chr6 169962916 169962951 -12452291 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 15113 182 42 14 chr6 169962951 169964337 -12450905 + L1MA4A LINE L1 2263 3609 -3396 1787 146 3 59 chr6 169964337 169964660 -12450582 + AluSx SINE Alu 7 311 -1 15113 182 42 14 chr6 169964660 169967460 -12447782 + L1MA4A LINE L1 3609 6710 -295 15470 180 43 14 chr6 170017460 170019662 -12395580 + L1MA4A LINE L1 125 2263 -4742 1941 164 0 3 chr6 170019662 170019955 -12395287 + AluSx SINE Alu 1 292 -20 266 0 0 29 chr6 170019962 170019997 -12395245 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 15470 180 43 14 chr6 170019997 170021383 -12393859 + L1MA4A LINE L1 2268 3613 -3392 1806 146 3 59 chr6 170021383 170021706 -12393536 + AluSx SINE Alu 7 311 -1 15470 180 43 14 chr6 170021706 170024783 -12390459 + L1MA4A LINE L1 3613 7002 -3 3797 77 22 16 chr6 170025431 170026217 -12389025 + L1PA8A LINE L1 4975 5764 -363 582 111 0 44 chr6 170026217 170026303 -12388939 + L1PA8A LINE L1 6044 6129 -2 335 45 0 0 chr6 170026837 170026881 -12388361 + L1MA4A LINE L1 6728 6771 -234 2482 90 0 0 chr6 170027804 170028115 -12387127 + AluSx SINE Alu 1 311 -1 2252 158 38 53 chr6 170028379 170028853 -12386389 - MLT1C LTR MaLR 0 467 1 841 153 0 29 chr6 170029076 170029213 -12386029 + FLAM_C SINE Alu 1 133 0 3898 125 122 2 chr6 170029753 170030394 -12384848 - MER72 LTR ERV1 0 722 5 400 239 42 142 chr6 170032141 170032501 -12382741 - L2 LINE L2 -4 3309 2986 808 192 69 39 chr6 170034331 170034534 -12380708 - MLT1C LTR MaLR -258 209 1 2598 189 91 73 chr6 170034963 170035677 -12379565 + LTR8A LTR ERV1 1 727 0 364 305 143 0 chr6 170036485 170036639 -12378603 + LTR33 LTR ERVL 1 176 -345 462 276 31 25 chr6 170036785 170036948 -12378294 + LTR33 LTR ERVL 344 507 -14 1043 150 114 65 chr6 170038869 170038989 -12376253 + MER33 DNA MER1_type 1 114 -2471 1969 134 13 20 chr6 170038989 170039287 -12375955 + AluSx SINE Alu 1 296 -16 1043 150 114 65 chr6 170039287 170039473 -12375769 + MER33 DNA MER1_type 114 322 -2 278 242 22 135 chr6 170039483 170039868 -12375374 - MER102b DNA MER1_type 0 341 9 21 0 0 0 chr6 170040441 170040462 -12374780 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 170040677 170040698 -12374544 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 14416 39 0 1 chr6 170040698 170043163 -12372079 - L1PA5 LINE L1 -13 6141 3678 2219 136 0 3 chr6 170043163 170043472 -12371770 - AluSx SINE Alu -4 308 1 229 245 64 32 chr6 170043781 170043875 -12371367 + MER69B DNA AcHobo 109 205 -1021 2214 226 71 86 chr6 170043907 170044799 -12370443 + MER69B DNA AcHobo 349 1226 0 831 182 126 69 chr6 170045206 170045530 -12369712 + MLT1A2 LTR MaLR 1 364 -32 377 23 0 0 chr6 170045530 170045573 -12369669 - MLT2A2 LTR ERVL 0 453 411 29042 100 12 7 chr6 170045573 170046650 -12368592 - HERVL-A2 LTR ERVL -1021 4743 3673 3237 34 5 0 chr6 170046650 170047037 -12368205 + L1PA4 LINE L1 5764 6152 -3 29042 100 12 7 chr6 170047037 170050733 -12364509 - HERVL-A2 LTR ERVL -2091 3673 1 3306 99 20 0 chr6 170050733 170051177 -12364065 - MLT2A2 LTR ERVL 0 453 1 232 139 0 0 chr6 170051178 170051214 -12364028 + MLT1A2 LTR MaLR 361 396 0 1090 226 282 15 chr6 170053790 170054255 -12360987 - MLT1E LTR MaLR 0 593 5 201 74 0 0 chr6 170057049 170057076 -12358166 + (A)n Simple_repeat Simple_repeat 1 27 0 233 213 21 75 chr6 170058721 170058815 -12356427 - L1MC5 LINE L1 -33 7928 7840 1171 283 99 29 chr6 170059915 170060462 -12354780 + MLT1G1 LTR MaLR 3 587 -8 384 22 0 0 chr6 170062228 170062273 -12352969 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 57 0 0 chr6 170063197 170063232 -12352010 + AT_rich Low_complexity Low_complexity 1 35 0 406 301 128 0 chr6 170063243 170063399 -12351843 - MER45A DNA AcHobo -2 176 1 282 133 0 0 chr6 170063665 170063710 -12351532 - MER53 DNA DNA -14 175 131 205 250 0 50 chr6 170064091 170064171 -12351071 + CT-rich Low_complexity Low_complexity 1 76 0 2105 148 122 8 chr6 170064364 170064748 -12350494 - MSTA LTR MaLR 0 428 1 834 148 44 33 chr6 170065212 170065395 -12349847 - MER53 DNA DNA 0 189 5 759 223 12 0 chr6 170066113 170066279 -12348963 - MIR SINE MIR -21 241 74 3642 235 42 32 chr6 170067282 170068021 -12347221 - L1MEc LINE L1 -2901 4056 3315 2154 150 8 32 chr6 170068021 170068394 -12346848 + THE1B LTR MaLR 1 364 0 3642 235 42 32 chr6 170068394 170069016 -12346226 - L1MEc LINE L1 -3642 3315 2701 * 5332 230 106 21 chr6 170069010 170070373 -12344869 - L1MEc LINE L1 -5374 1485 7 276 148 33 49 chr6 170071327 170071388 -12343854 + MLT1L LTR MaLR 19 78 -537 647 260 91 83 chr6 170071519 170071881 -12343361 + MLT1L LTR MaLR 218 582 -33 2407 131 6 19 chr6 170072240 170072606 -12342636 - THE1B LTR MaLR 0 364 4 280 255 33 0 chr6 170073193 170073295 -12341947 - MIR SINE MIR -62 146 84 4196 158 18 34 chr6 170073309 170074096 -12341146 + LTR1 LTR ERV1 12 785 0 471 200 67 19 chr6 170075105 170075210 -12340032 + MER81 DNA DNA 2 111 -3 23 0 0 0 chr6 170075533 170075556 -12339686 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 170075832 170075860 -12339382 + AT_rich Low_complexity Low_complexity 1 28 0 385 298 96 6 chr6 170076421 170076599 -12338643 + MIR SINE MIR 57 250 -12 3916 143 10 68 chr6 170076697 170077399 -12337843 + LTR8 LTR ERV1 1 661 -30 723 137 57 0 chr6 170077879 170078003 -12337239 + FRAM SINE Alu 41 171 -5 22 0 0 0 chr6 170078028 170078050 -12337192 + AT_rich Low_complexity Low_complexity 1 22 0 2255 159 62 0 chr6 170078077 170078447 -12336795 + MER57A LTR ERV1 1 393 -10 2726 168 11 13 chr6 170080814 170081272 -12333970 - LTR32 LTR ERVL -1 470 14 7488 32 0 3 chr6 170082382 170083259 -12331983 + L1PA3 LINE L1 5282 6155 0 216 0 0 0 chr6 170083277 170083301 -12331941 + (CA)n Simple_repeat Simple_repeat 1 24 0 203 286 0 0 chr6 170083974 170084030 -12331212 + G-rich Low_complexity Low_complexity 1 56 0 325 330 110 11 chr6 170084196 170084387 -12330855 - MIR SINE MIR -37 225 16 1847 151 0 39 chr6 170084635 170084946 -12330296 - AluJo SINE Alu -13 299 1 186 43 0 0 chr6 170085655 170085678 -12329564 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 452 296 45 31 chr6 170085857 170086080 -12329162 + L1MEc LINE L1 30 255 -6141 1299 280 67 44 chr6 170086402 170086581 -12328661 + L1MEc LINE L1 1648 1822 -4574 2014 125 4 4 chr6 170086581 170086900 -12328342 + AluSc SINE Alu 1 319 0 1299 280 67 44 chr6 170086900 170087576 -12327666 + L1MEc LINE L1 1822 2523 -3873 790 187 99 61 chr6 170087625 170088263 -12326979 - MER4C LTR ERV1 0 695 2 247 326 21 21 chr6 170088355 170088450 -12326792 + LTR67 LTR ERVL 100 194 -363 27 29 0 0 chr6 170089422 170089456 -12325786 + AT_rich Low_complexity Low_complexity 1 34 0 564 99 0 0 chr6 170089511 170089592 -12325650 - L1PA10 LINE L1 -3 6165 6085 342 268 183 3 chr6 170089720 170089890 -12325352 - MIR SINE MIR -16 246 50 348 309 36 30 chr6 170089912 170090080 -12325162 + MLT1I LTR MaLR 71 239 -170 356 208 0 62 chr6 170090127 170090223 -12325019 + MLT1J2 LTR MaLR 361 450 0 234 349 18 0 chr6 170091043 170091152 -12324090 + MIR SINE MIR 41 151 -111 449 283 35 7 chr6 170091603 170091748 -12323494 + MIR SINE MIR 113 261 -1 2934 229 74 17 chr6 170092085 170093490 -12321752 + L1M3c LINE L1 735 2201 -4009 1024 282 51 34 chr6 170095362 170096008 -12319234 - L1ME2 LINE L1 -213 5951 5295 542 304 40 27 chr6 170096687 170096911 -12318331 - MIR SINE MIR -8 254 28 1841 153 48 40 chr6 170097057 170097429 -12317813 - THE1C LTR MaLR 0 375 1 244 340 0 10 chr6 170098627 170098724 -12316518 - LTR16C LTR ERVL -105 386 291 273 200 62 0 chr6 170099124 170099189 -12316053 + MIR SINE MIR 59 127 -135 499 250 128 0 chr6 170099994 170100150 -12315092 - MIR SINE MIR -5 257 82 1626 205 85 45 chr6 170101466 170101915 -12313327 - MLT1C LTR MaLR 0 467 1 251 335 54 32 chr6 170103850 170103982 -12311260 - MIR SINE MIR -64 198 59 2445 118 21 16 chr6 170103982 170104355 -12310887 + THE1C LTR MaLR 1 375 0 251 335 54 32 chr6 170104355 170104407 -12310835 - MIR SINE MIR -203 59 10 500 246 88 0 chr6 170105900 170106071 -12309171 - MIR SINE MIR 0 262 77 2752 119 33 19 chr6 170106306 170106734 -12308508 - Tigger2a DNA MER2_type 0 434 1 204 341 11 0 chr6 170107076 170107164 -12308078 + GA-rich Low_complexity Low_complexity 4 92 0 1041 344 50 28 chr6 170107729 170108522 -12306720 - L3 LINE CR1 -357 1220 410 342 309 171 14 chr6 170108791 170109065 -12306177 - MLT1K LTR MaLR -94 494 178 1071 250 114 57 chr6 170109065 170109587 -12305655 - MLT1G1 LTR MaLR 0 555 1 852 117 0 17 chr6 170109670 170109790 -12305452 + FLAM_C SINE Alu 5 122 -11 21 36 0 0 chr6 170110501 170110529 -12304713 + AT_rich Low_complexity Low_complexity 1 28 0 2303 214 78 78 chr6 170110781 170111457 -12303785 - LTR8 LTR ERV1 0 691 16 226 182 114 0 chr6 170111462 170111506 -12303736 - LTR8 LTR ERV1 -642 49 1 2166 219 60 2 chr6 170112624 170113122 -12302120 + MER74A LTR ERVL 27 553 -5 2234 125 144 5 chr6 170115789 170116165 -12299077 - MSTA LTR MaLR 0 428 1 373 304 29 41 chr6 170117363 170117534 -12297708 - MIR SINE MIR -36 226 58 218 301 124 0 chr6 170118693 170118806 -12296436 - MIR SINE MIR -89 173 47 361 274 47 44 chr6 170118812 170118947 -12296295 - MLT1H LTR MaLR 0 588 431 363 280 40 0 chr6 170119113 170119238 -12296004 - MLT1G1 LTR MaLR -465 130 1 2042 245 76 6 chr6 170122311 170122850 -12292392 + MLT1G LTR MaLR 11 587 -3 666 133 0 0 chr6 170124277 170124390 -12290852 + (CATAG)n Simple_repeat Simple_repeat 2 114 0 181 209 30 0 chr6 170124398 170124465 -12290777 + (TGAA)n Simple_repeat Simple_repeat 4 72 0 339 326 38 8 chr6 170125436 170125568 -12289674 + L2 LINE L2 3137 3272 0 192 308 218 6 chr6 170125631 170125787 -12289455 - MIR SINE MIR -51 211 23 2333 100 0 0 chr6 170125957 170126256 -12288986 - AluSg SINE Alu -11 299 1 361 224 81 137 chr6 170128517 170128681 -12286561 - L1MC5 LINE L1 -35 7926 7754 189 0 0 0 chr6 170128681 170128702 -12286540 + (TC)n Simple_repeat Simple_repeat 1 21 0 361 224 81 137 chr6 170128702 170129020 -12286222 - L1MC5 LINE L1 -207 7754 7471 991 154 6 12 chr6 170129034 170129196 -12286046 + AluJb SINE Alu 137 297 -15 7065 55 22 3 chr6 170130256 170131665 -12283577 + L1PA8 LINE L1 4739 6165 -7 197 256 115 45 chr6 170132457 170132613 -12282629 + MER5A DNA MER1_type 2 168 -21 332 179 0 101 chr6 170132759 170132938 -12282304 + (CCA)n Simple_repeat Simple_repeat 1 161 0 297 112 0 105 chr6 170132962 170133105 -12282137 + (CCA)n Simple_repeat Simple_repeat 1 128 0 251 140 0 173 chr6 170133132 170133282 -12281960 + (CCA)n Simple_repeat Simple_repeat 2 125 0 206 288 0 0 chr6 170133300 170133359 -12281883 + MER5A DNA MER1_type 29 87 -102 234 0 0 0 chr6 170133674 170133700 -12281542 + (A)n Simple_repeat Simple_repeat 1 26 0 1137 252 59 43 chr6 170133985 170134144 -12281098 - L1ME4a LINE L1 0 6121 5966 12979 33 1 1 chr6 170134144 170136446 -12278796 - L1PA4 LINE L1 -1 6154 3854 1137 252 59 43 chr6 170136446 170136862 -12278380 - L1ME4a LINE L1 -155 5966 5537 501 206 115 48 chr6 170136924 170137089 -12278153 - MIR SINE MIR -11 251 76 268 237 65 65 chr6 170137755 170137924 -12277318 + L2 LINE L2 2830 2998 -274 207 243 57 0 chr6 170138011 170138081 -12277161 + L2 LINE L2 3191 3264 -8 209 197 33 49 chr6 170138118 170138179 -12277063 - MIR SINE MIR -67 141 82 313 323 30 15 chr6 170139263 170139396 -12275846 - MIR SINE MIR -108 154 20 1042 201 123 41 chr6 170140719 170140780 -12274462 + MER20B DNA MER1_type 1 56 -727 2271 107 0 0 chr6 170140780 170141089 -12274153 - AluSg SINE Alu -1 309 1 1042 201 123 41 chr6 170141089 170141296 -12273946 + MER20B DNA MER1_type 56 291 -492 518 203 50 12 chr6 170141371 170141532 -12273710 + MIR SINE MIR 59 223 -39 326 192 133 75 chr6 170142613 170142689 -12272553 - MER58C DNA MER1_type -2207 213 143 2222 92 3 41 chr6 170142689 170143005 -12272237 - AluY SINE Alu -7 304 1 2177 116 7 0 chr6 170143005 170143299 -12271943 - AluSx SINE Alu -16 296 1 326 192 133 75 chr6 170143299 170143341 -12271901 - MER58C DNA MER1_type -2276 144 87 2203 97 13 13 chr6 170143626 170144011 -12271231 + AluSc SINE Alu 1 385 0 1173 223 28 25 chr6 170144045 170144327 -12270915 + LTR40b LTR ERVL 100 382 -80 341 162 15 0 chr6 170144575 170144643 -12270599 + GA-rich Low_complexity Low_complexity 3 71 0 318 27 0 0 chr6 170145299 170145336 -12269906 + tRNA-Thr-ACA tRNA tRNA 1 37 -39 234 272 98 11 chr6 170145770 170145862 -12269380 - MER5B DNA MER1_type -78 100 1 225 0 0 0 chr6 170145997 170146022 -12269220 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 272 259 9 0 chr6 170146133 170146241 -12269001 + GA-rich Low_complexity Low_complexity 4 112 0 202 180 0 60 chr6 170147021 170147071 -12268171 + GA-rich Low_complexity Low_complexity 5 51 0 2619 100 83 10 chr6 170147203 170147602 -12267640 - MSTA LTR MaLR 0 428 1 9204 160 14 57 chr6 170147602 170149327 -12265915 - MSTA-int LTR MaLR 0 1651 1 2674 104 75 10 chr6 170149327 170149729 -12265513 - MSTA LTR MaLR 0 428 1 1210 236 69 20 chr6 170151667 170152057 -12263185 - MLT1I LTR MaLR 0 409 1 1958 116 25 18 chr6 170153109 170153394 -12261848 + AluSx SINE Alu 1 287 -25 200 35 35 0 chr6 170153416 170153445 -12261797 + (TA)n Simple_repeat Simple_repeat 1 30 0 1612 186 39 20 chr6 170153835 170154190 -12261052 + MLT1A1 LTR MaLR 4 365 0 228 35 0 0 chr6 170154774 170154803 -12260439 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 25 0 0 0 chr6 170155485 170155510 -12259732 + AT_rich Low_complexity Low_complexity 1 25 0 663 249 120 48 chr6 170155599 170156217 -12259025 + L1MCc LINE L1 1272 2114 -4827 632 174 16 8 chr6 170156723 170156844 -12258398 - FLAM_A SINE Alu -11 122 1 24 0 0 0 chr6 170156924 170156948 -12258294 + AT_rich Low_complexity Low_complexity 1 24 0 1415 275 89 84 chr6 170158536 170159180 -12256062 - HAL1 LINE L1 -1075 1432 793 776 223 38 0 chr6 170159180 170159337 -12255905 + FRAM SINE Alu 1 163 -3 1415 275 89 84 chr6 170159337 170160116 -12255126 - HAL1 LINE L1 -1714 793 1 266 294 12 12 chr6 170160177 170160262 -12254980 + GA-rich Low_complexity Low_complexity 1 85 0 437 253 87 40 chr6 170161016 170161316 -12253926 + L1MEd LINE L1 620 933 -5186 241 265 12 36 chr6 170161339 170161422 -12253820 - MER110 LTR ERV1 -11 480 400 440 217 57 140 chr6 170161734 170161912 -12253330 + L1MEd LINE L1 970 1112 -5007 2152 145 0 0 chr6 170161912 170162222 -12253020 + AluJb SINE Alu 1 310 -2 440 217 57 140 chr6 170162222 170162357 -12252885 + L1MEd LINE L1 1112 1257 -4862 352 335 21 22 chr6 170162432 170162697 -12252545 + L1MEd LINE L1 1364 1669 -4553 1992 83 0 36 chr6 170162799 170163075 -12252167 - AluY SINE Alu -2 309 44 535 137 46 38 chr6 170163599 170163730 -12251512 + L1MA4 LINE L1 6166 6297 -3 2219 289 62 30 chr6 170163752 170164311 -12250931 + L1MEd LINE L1 2660 3200 -2929 524 173 19 0 chr6 170164311 170164415 -12250827 + L1MA7 LINE L1 6175 6280 -11 2219 289 62 30 chr6 170164415 170165296 -12249946 + L1MEd LINE L1 3200 4145 -1984 1652 246 113 19 chr6 170166654 170167227 -12248015 - MLT2E LTR ERVL 0 628 2 407 283 39 79 chr6 170169296 170169349 -12245893 + L2 LINE L2 2664 2718 -554 787 226 0 0 chr6 170169349 170169508 -12245734 + FRAM SINE Alu 1 159 -7 407 283 39 79 chr6 170169508 170170103 -12245139 + L2 LINE L2 2718 3272 0 251 285 72 49 chr6 170171949 170172212 -12243030 + L2 LINE L2 2553 2821 -493 1247 282 61 46 chr6 170172395 170173040 -12242202 - L1MEd LINE L1 -2839 3290 2656 1071 229 59 39 chr6 170173040 170173377 -12241865 - MER2 DNA MER2_type 0 344 1 1247 282 61 46 chr6 170173377 170174268 -12240974 - L1MEd LINE L1 -3473 2656 1779 5547 120 1 1 chr6 170174278 170175070 -12240172 + L1PA15 LINE L1 5366 6157 -8 927 280 78 42 chr6 170175080 170176259 -12238983 - L1MEd LINE L1 -4444 1685 515 1787 161 0 31 chr6 170176512 170176835 -12238407 - AluJb SINE Alu 0 314 1 423 0 0 0 chr6 170178256 170178303 -12236939 + (CA)n Simple_repeat Simple_repeat 1 47 0 816 93 8 23 chr6 170178307 170178436 -12236806 + L1MC4 LINE L1 7916 8042 0 2072 127 16 10 chr6 170180205 170180513 -12234729 + AluSx SINE Alu 1 310 -2 2785 13 0 3 chr6 170180827 170181133 -12234109 + AluY SINE Alu 3 307 -4 191 285 0 100 chr6 170183155 170183285 -12231957 - MER5B DNA MER1_type -35 143 27 1764 78 0 5 chr6 170184052 170184271 -12230971 + AluY SINE Alu 1 218 -93 1461 149 25 0 chr6 170184305 170184547 -12230695 - L1MA5 LINE L1 -309 5991 5744 924 145 0 7 chr6 170184537 170184689 -12230553 + L1MA5 LINE L1 5971 6121 -179 * 428 183 11 0 chr6 170184689 170184782 -12230460 + (TA)n Simple_repeat Simple_repeat 2 95 0 239 283 0 22 chr6 170184782 170184874 -12230368 - L1MC4 LINE L1 -1339 6703 6614 * 282 284 0 0 chr6 170184797 170184885 -12230357 + L1MC4 LINE L1 6615 6702 -1340 234 150 0 0 chr6 170184886 170184926 -12230316 + (TATG)n Simple_repeat Simple_repeat 4 43 0 180 111 0 0 chr6 170184927 170184954 -12230288 + (TA)n Simple_repeat Simple_repeat 1 27 0 2104 125 0 14 chr6 170184954 170185242 -12230000 - AluSx SINE Alu -28 284 1 909 110 74 6 chr6 170185242 170185405 -12229837 + L1MA5A LINE L1 6114 6287 -10 1303 204 91 3 chr6 170185467 170185785 -12229457 + L1MC2 LINE L1 5996 6341 -3 2723 157 6 19 chr6 170186019 170186489 -12228753 - MLT2C2 LTR ERVL 0 464 1 234 0 0 0 chr6 170187913 170187939 -12227303 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 4008 99 13 0 chr6 170188521 170189067 -12226175 - MER41A LTR ERV1 0 554 2 243 406 29 0 chr6 170189221 170189359 -12225883 - L2 LINE L2 -4 3268 3127 474 184 0 0 chr6 170189693 170189780 -12225462 - AluJ/FRAM SINE Alu -5 307 221 289 358 41 0 chr6 170190720 170190843 -12224399 + L2 LINE L2 3145 3272 0 2645 207 51 85 chr6 170191373 170192242 -12223000 + L1MC4 LINE L1 7214 7995 0 12801 179 15 19 chr6 170192317 170195656 -12219586 - L1PA13 LINE L1 0 7601 4272 5548 232 18 20 chr6 170195658 170197299 -12217943 - L1PA13 LINE L1 -3483 4101 2471 7463 227 44 11 chr6 170197357 170198955 -12216287 - L1PA13 LINE L1 -5925 1656 6 183 278 0 37 chr6 170198962 170199016 -12216226 - MER5A DNA MER1_type -117 72 21 206 227 76 15 chr6 170199047 170199113 -12216129 - MIR SINE MIR -109 99 30 600 150 242 0 chr6 170199437 170199557 -12215685 + L1MCa LINE L1 1013 1161 -5265 829 172 8 0 chr6 170199557 170199691 -12215551 + AluJb SINE Alu 1 135 -177 1398 222 13 3 chr6 170199691 170199997 -12215245 + AluJo SINE Alu 1 309 -3 912 154 8 19 chr6 170200009 170200376 -12214866 + GA-rich Low_complexity Low_complexity 1 363 0 317 132 0 19 chr6 170200403 170200456 -12214786 + L1MCa LINE L1 1160 1211 -5215 3455 243 78 21 chr6 170201394 170202508 -12212734 - L1MEc LINE L1 -5175 1221 44 586 226 101 1 chr6 170202891 170203077 -12212165 - MER63B DNA MER1_type -2 1060 7 185 339 0 0 chr6 170203734 170203799 -12211443 - L2 LINE L2 -17 3255 3191 1716 188 0 7 chr6 170204129 170204432 -12210810 + AluJo SINE Alu 1 301 -11 438 20 0 0 chr6 170205502 170205553 -12209689 + (TG)n Simple_repeat Simple_repeat 2 52 0 1694 160 84 0 chr6 170206601 170206917 -12208325 + AluJo SINE Alu 1 340 0 571 289 28 17 chr6 170207545 170207725 -12207517 - MIR SINE MIR -56 206 25 340 332 94 9 chr6 170208489 170208712 -12206530 - L2 LINE L2 -170 3143 2902 2234 78 7 33 chr6 170209656 170209962 -12205280 + AluY SINE Alu 1 298 -13 437 321 43 11 chr6 170210117 170210304 -12204938 - MIR3 SINE MIR 0 208 16 23 33 0 0 chr6 170213495 170213525 -12201717 + AT_rich Low_complexity Low_complexity 1 30 0 936 189 30 23 chr6 170213597 170213848 -12201394 + L1MA9 LINE L1 5473 5732 -559 1099 162 37 0 chr6 170213848 170214039 -12201203 - MSTD LTR MaLR 0 396 199 607 168 0 0 chr6 170214061 170214156 -12201086 - MSTD LTR MaLR -333 95 1 1711 228 34 61 chr6 170214162 170214594 -12200648 + L1MA9 LINE L1 5734 6151 -161 2376 88 0 23 chr6 170214594 170214902 -12200340 + AluY SINE Alu 1 301 -10 1711 228 34 61 chr6 170214902 170214995 -12200247 + L1MA9 LINE L1 6151 6245 -67 1811 189 6 6 chr6 170215004 170215316 -12199926 + AluJb SINE Alu 1 312 0 700 207 19 4 chr6 170215316 170215568 -12199674 + GA-rich Low_complexity Low_complexity 1 255 0 289 109 0 0 chr6 170215580 170215626 -12199616 + L1MA8 LINE L1 6226 6271 -20 343 227 45 0 chr6 170215762 170215850 -12199392 + L1ME4a LINE L1 5565 5656 -465 283 202 113 24 chr6 170216270 170216394 -12198848 + L1ME4a LINE L1 5982 6116 -5 407 282 108 20 chr6 170218640 170218835 -12196407 - MIR SINE MIR -37 225 14 2026 170 106 8 chr6 170220216 170220604 -12194638 + MSTB LTR MaLR 1 426 0 2365 156 11 14 chr6 170220832 170221268 -12193974 + L1MC1 LINE L1 5899 6333 0 1681 188 0 30 chr6 170222546 170222850 -12192392 - AluJo SINE Alu -17 295 1 569 267 175 63 chr6 170223246 170223628 -12191614 + MLT1J LTR MaLR 3 427 -84 3022 98 102 4 chr6 170223811 170224309 -12190933 - L1MA3 LINE L1 -5 7719 7173 16043 19 0 0 chr6 170224322 170226921 -12188321 - L1HS LINE L1 0 6155 3557 6223 142 8 22 chr6 170226915 170228485 -12186757 - L1MA3 LINE L1 -519 7204 5657 * 7386 177 27 10 chr6 170228459 170228520 -12186722 - L1MA3 LINE L1 -2396 5169 5110 1063 48 14 7 chr6 170228520 170228666 -12186576 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 7386 177 27 10 chr6 170228666 170230302 -12184940 - L1MA3 LINE L1 -2455 5110 3443 374 316 56 31 chr6 170231395 170231445 -12183797 - MIR SINE MIR -16 246 199 1790 168 14 10 chr6 170231445 170231736 -12183506 - AluJo SINE Alu -20 292 1 374 316 56 31 chr6 170231736 170231881 -12183361 - MIR SINE MIR -63 199 46 240 163 0 0 chr6 170233568 170233611 -12181631 + (TG)n Simple_repeat Simple_repeat 2 44 0 562 174 132 0 chr6 170234626 170234747 -12180495 + MLT1J2 LTR MaLR 45 181 -269 186 281 260 0 chr6 170234761 170234857 -12180385 - L2 LINE L2 -954 2360 2240 619 156 9 18 chr6 170235353 170235462 -12179780 - MER66B LTR ERV1 0 486 379 1030 285 98 45 chr6 170235634 170237200 -12178042 + L1MEc LINE L1 1606 3216 -2999 1726 215 66 125 chr6 170237312 170237473 -12177769 - LTR1B LTR ERV1 -81 745 576 2294 84 22 26 chr6 170237473 170237784 -12177458 - AluSg SINE Alu 0 310 1 1726 215 66 125 chr6 170237784 170238414 -12176828 - LTR1B LTR ERV1 -250 576 1 360 272 91 16 chr6 170238476 170238730 -12176512 + L1MEc LINE L1 3289 3561 -2654 2530 177 6 10 chr6 170238900 170239385 -12175857 - L1 LINE L1 -830 5316 4834 * 2665 203 23 78 chr6 170239353 170240083 -12175159 + L1MA6 LINE L1 5471 6160 -140 1530 161 0 82 chr6 170240125 170240441 -12174801 + AluJo SINE Alu 22 311 -1 994 279 39 23 chr6 170240608 170241048 -12174194 + L1MEc LINE L1 3701 4147 -2068 2269 109 0 0 chr6 170241058 170241360 -12173882 + AluSx SINE Alu 1 302 -10 1690 182 0 22 chr6 170242029 170242347 -12172895 - AluJo SINE Alu -1 311 1 630 274 100 41 chr6 170243293 170243367 -12171875 - L1ME4a LINE L1 -222 5899 5831 2196 132 3 0 chr6 170243367 170243671 -12171571 - AluSx SINE Alu -7 305 1 630 274 100 41 chr6 170243671 170243936 -12171306 - L1ME4a LINE L1 -290 5831 5540 2404 97 0 0 chr6 170244223 170244533 -12170709 - AluY SINE Alu -1 310 1 353 228 298 6 chr6 170244533 170244691 -12170551 - MIR SINE MIR -33 229 26 251 314 12 0 chr6 170245802 170245888 -12169354 - MER94 DNA DNA -42 92 6 1314 210 108 28 chr6 170245888 170246312 -12168930 + L1MDa LINE L1 18 475 -6065 977 249 114 66 chr6 170246465 170247126 -12168116 - MER21B LTR ERV1 -7 598 57 850 239 10 0 chr6 170247311 170247512 -12167730 + L1MDa LINE L1 982 1184 -5359 218 32 32 0 chr6 170248056 170248087 -12167155 + (TG)n Simple_repeat Simple_repeat 2 33 0 449 250 23 18 chr6 170249069 170249232 -12166010 - L1MDa LINE L1 -5340 1203 1016 409 259 17 63 chr6 170250301 170250349 -12164893 - MIR3 SINE MIR -3 205 156 2241 135 0 0 chr6 170250349 170250661 -12164581 + AluSx SINE Alu 1 312 0 409 259 17 63 chr6 170250661 170250786 -12164456 - MIR3 SINE MIR -52 156 40 34 24 0 0 chr6 170250860 170250901 -12164341 + AT_rich Low_complexity Low_complexity 1 41 0 2222 127 0 0 chr6 170250978 170251286 -12163956 - AluSq SINE Alu -5 308 1 2196 118 7 0 chr6 170251513 170251819 -12163423 - AluSg SINE Alu -2 308 1 3745 129 40 5 chr6 170251868 170252450 -12162792 + LTR43 LTR ERV1 1 602 0 990 222 85 78 chr6 170252775 170252925 -12162317 + MLT1D LTR MaLR 14 161 -344 2179 103 0 0 chr6 170252925 170253223 -12162019 - AluSx SINE Alu 0 308 11 990 222 85 78 chr6 170253223 170253495 -12161747 + MLT1D LTR MaLR 161 440 -65 960 188 35 67 chr6 170253513 170253768 -12161474 - MLT1D LTR MaLR -258 247 1 396 244 120 50 chr6 170253845 170254069 -12161173 - MLT1I LTR MaLR -172 237 1 1198 244 107 101 chr6 170254314 170254999 -12160243 - MER21B LTR ERV1 -149 714 26 262 281 129 28 chr6 170255119 170255297 -12159945 + MLT1K LTR MaLR 378 573 -15 2381 91 0 0 chr6 170256350 170256647 -12158595 + AluY SINE Alu 1 297 -14 498 247 204 11 chr6 170257030 170257216 -12158026 - MIR SINE MIR -13 249 28 437 147 99 131 chr6 170257365 170257556 -12157686 - Charlie5 DNA MER1_type -27 2585 2401 2091 268 143 35 chr6 170257731 170258824 -12156418 - L2 LINE L2 -355 2959 1698 3253 115 2 2 chr6 170258824 170259319 -12155923 + L1PA13 LINE L1 5688 6182 0 2091 268 143 35 chr6 170259319 170259536 -12155706 - L2 LINE L2 -1616 1698 1506 339 232 53 21 chr6 170259645 170259740 -12155502 + MLT1L LTR MaLR 518 615 0 198 103 0 0 chr6 170260484 170260513 -12154729 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 2069 115 0 4 chr6 170260773 170261052 -12154190 + AluSx SINE Alu 20 297 -15 463 234 121 62 chr6 170261429 170261686 -12153556 - L1MC5 LINE L1 -78 7883 7612 244 250 56 0 chr6 170262028 170262100 -12153142 - L2 LINE L2 -49 3264 3189 589 126 134 0 chr6 170262645 170262772 -12152470 + L1MA8 LINE L1 6145 6288 -3 5493 163 33 8 chr6 170262813 170263882 -12151360 + L1MC1 LINE L1 5170 6263 -70 356 208 114 13 chr6 170263903 170264036 -12151206 + L1MC2 LINE L1 6203 6337 0 1019 276 108 14 chr6 170265207 170265577 -12149665 - MLT1J1 LTR MaLR -18 428 24 310 329 25 32 chr6 170266204 170266362 -12148880 + L2 LINE L2 2518 2674 -640 243 270 14 14 chr6 170266731 170266805 -12148437 + L2 LINE L2 3198 3271 -1 1897 110 0 0 chr6 170267055 170267372 -12147870 - AluY SINE Alu 0 311 50 474 274 41 56 chr6 170267412 170267751 -12147491 - L1M4 LINE L1 -3123 3023 2690 365 323 104 15 chr6 170267927 170268128 -12147114 - MIR SINE MIR -43 219 1 1651 144 0 104 chr6 170268543 170268870 -12146372 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr6 170268875 170268897 -12146345 + AT_rich Low_complexity Low_complexity 1 22 0 1109 185 0 0 chr6 170268961 170269134 -12146108 + AluJb SINE Alu 1 173 -139 2955 16 0 0 chr6 170269189 170269507 -12145735 + AluYb8 SINE Alu 1 318 0 183 284 108 0 chr6 170269948 170270022 -12145220 + MIR SINE MIR 167 248 -14 1099 228 21 0 chr6 170270157 170270390 -12144852 + MIR SINE MIR 22 259 -3 2150 126 0 0 chr6 170270390 170270676 -12144566 + AluSx SINE Alu 1 286 -26 270 0 0 0 chr6 170270679 170270709 -12144533 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 239 0 32 0 chr6 170270841 170270872 -12144370 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 868 153 0 0 chr6 170270889 170271013 -12144229 - FRAM SINE Alu -36 140 17 258 349 18 30 chr6 170271392 170271558 -12143684 + MIR SINE MIR 88 251 -11 2193 116 20 0 chr6 170272763 170273065 -12142177 - AluSx SINE Alu 0 312 5 237 33 0 0 chr6 170273569 170273599 -12141643 + (TG)n Simple_repeat Simple_repeat 1 30 0 616 262 119 51 chr6 170273738 170274162 -12141080 - MER45C DNA AcHobo -320 633 119 2171 136 0 0 chr6 170274162 170274464 -12140778 + AluSx SINE Alu 1 302 -10 616 262 119 51 chr6 170274464 170274583 -12140659 - MER45C DNA AcHobo -834 119 10 2023 129 11 0 chr6 170275269 170275576 -12139666 + AluSx SINE Alu 1 310 0 475 325 68 14 chr6 170276457 170276737 -12138505 - L2 LINE L2 -361 2953 2659 1327 244 78 23 chr6 170276746 170277181 -12138061 - MLT1C LTR MaLR -8 459 1 752 280 33 18 chr6 170277283 170277558 -12137684 - L2 LINE L2 -821 2493 2215 1898 167 72 13 chr6 170277910 170278299 -12136943 + LTR52 LTR ERVL 1 412 -9 257 241 38 25 chr6 170279163 170279242 -12136000 + MIR3 SINE MIR 94 173 -35 1907 173 61 13 chr6 170280406 170280781 -12134461 - MSTD LTR MaLR -3 393 1 1437 134 9 0 chr6 170280913 170281137 -12134105 + L1PA14 LINE L1 5930 6155 -6 502 157 57 14 chr6 170281747 170282381 -12132861 + (TG)n Simple_repeat Simple_repeat 1 660 0 248 269 0 0 chr6 170282462 170282514 -12132728 + MER103 DNA DNA 57 108 -58 1765 131 4 0 chr6 170282778 170283014 -12132228 - AluSx SINE Alu -43 269 33 216 311 89 58 chr6 170283446 170283574 -12131668 - MIR SINE MIR -20 242 105 783 186 0 0 chr6 170283574 170283750 -12131492 - FLAM_C SINE Alu 0 133 1 216 311 89 58 chr6 170283750 170283811 -12131431 - MIR SINE MIR -157 105 47 3002 238 47 63 chr6 170283899 170285036 -12130206 - L1M4 LINE L1 -2127 4019 2902 623 241 20 25 chr6 170285750 170285949 -12129293 + L1M2 LINE L1 5535 5732 -580 617 266 18 0 chr6 170285949 170286118 -12129124 - MSTD LTR MaLR 0 396 225 375 274 0 0 chr6 170286162 170286257 -12128985 - MSTD LTR MaLR -333 95 1 552 182 132 0 chr6 170287205 170287326 -12127916 + MLT1J2 LTR MaLR 45 181 -269 2864 31 0 0 chr6 170288079 170288397 -12126845 - AluYb8 SINE Alu 0 318 1 1109 185 0 0 chr6 170288452 170288625 -12126617 - AluJb SINE Alu -139 173 1 22 0 0 0 chr6 170288689 170288711 -12126531 + AT_rich Low_complexity Low_complexity 1 22 0 1473 163 0 98 chr6 170288716 170289041 -12126201 - AluJb SINE Alu -19 293 1 375 223 205 18 chr6 170339556 170339668 -12075574 + L1MC4 LINE L1 6926 7058 -984 216 0 0 0 chr6 170339669 170339693 -12075549 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2195 239 88 7 chr6 170339695 170340307 -12074935 + L1MC4 LINE L1 7238 7899 -143 250 161 32 0 chr6 170340317 170340379 -12074863 + L1MD3 LINE L1 7931 7994 -1 601 185 0 34 chr6 170340472 170340621 -12074621 + FLAM_A SINE Alu 19 142 0 14975 195 18 21 chr6 170341223 170343384 -12071858 + L1P5 LINE L1 280 2445 -4422 279 0 0 0 chr6 170343384 170343415 -12071827 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 14975 195 18 21 chr6 170343415 170345264 -12069978 + L1P5 LINE L1 2445 4297 -2570 2328 91 0 7 chr6 170345264 170345562 -12069680 - AluSg SINE Alu -14 296 1 14975 195 18 21 chr6 170345562 170346460 -12068782 + L1P5 LINE L1 4297 5196 -1671 6993 31 2 9 chr6 170346460 170347256 -12067986 + SVA Other Other 596 1386 0 14975 195 18 21 chr6 170347256 170348011 -12067231 + L1P5 LINE L1 5196 5951 -916 4928 88 49 1 chr6 170348011 170348668 -12066574 + LTR12 LTR ERV1 1 688 0 14975 195 18 21 chr6 170348668 170348803 -12066439 + L1P5 LINE L1 5951 6085 -782 2047 154 3 0 chr6 170348803 170349108 -12066134 - AluSq SINE Alu -7 306 1 14975 195 18 21 chr6 170349108 170349215 -12066027 + L1P5 LINE L1 6085 6507 -360 255 139 0 0 chr6 170349217 170349253 -12065989 - Alu SINE Alu -264 36 1 661 63 105 0 chr6 170349256 170349351 -12065891 + L1PB1 LINE L1 5687 5791 -360 188 99 33 74 chr6 170349366 170349487 -12065755 + (TA)n Simple_repeat Simple_repeat 2 117 0 350 184 72 16 chr6 170349490 170349615 -12065627 + (CATAT)n Simple_repeat Simple_repeat 4 135 0 199 114 45 0 chr6 170349622 170349666 -12065576 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 2352 128 11 0 chr6 170349666 170350025 -12065217 + L1PB1 LINE L1 5782 6144 -7 603 209 137 43 chr6 170350085 170350299 -12064943 + MLT1B LTR MaLR 187 390 0 713 301 206 29 chr6 170350546 170351214 -12064028 - L2 LINE L2 -24 3289 2414 2230 87 31 0 chr6 170351214 170351501 -12063741 + AluSp SINE Alu 1 296 -17 713 301 206 29 chr6 170351501 170351705 -12063537 - L2 LINE L2 -899 2414 2247 597 238 149 103 chr6 170351721 170352091 -12063151 - MLT1K LTR MaLR -1 587 201 286 275 12 0 chr6 170352286 170352366 -12062876 - MLT1J1 LTR MaLR -13 433 353 891 194 0 0 chr6 170352366 170352521 -12062721 - AluJb SINE Alu -18 294 140 778 158 0 36 chr6 170352649 170352788 -12062454 + AluJo SINE Alu 1 134 -178 309 296 171 26 chr6 170353184 170353222 -12062020 + MER5B DNA MER1_type 4 35 -143 1587 154 14 52 chr6 170353222 170353508 -12061734 + AluJb SINE Alu 2 276 -36 309 296 171 26 chr6 170353508 170353621 -12061621 + MER5B DNA MER1_type 35 177 -1 2385 103 3 0 chr6 170353646 170353956 -12061286 + AluSp SINE Alu 1 311 -2 2401 97 3 0 chr6 170354314 170354623 -12060619 + AluSp SINE Alu 1 310 -3 1118 216 44 50 chr6 170355234 170355531 -12059711 - L1 LINE L1 -3424 3424 3130 710 177 8 8 chr6 170355533 170355657 -12059585 + FLAM_C SINE Alu 2 125 -18 1183 173 49 29 chr6 170355680 170355990 -12059252 - L1 LINE L1 -3709 3139 2820 1484 190 17 34 chr6 170356020 170356315 -12058927 - AluJo SINE Alu -22 290 1 252 146 0 0 chr6 170356315 170356363 -12058879 - L1 LINE L1 -4010 2839 2792 33188 53 2 2 chr6 170356623 170362764 -12052478 + L1PA5 LINE L1 11 6152 -2 833 193 21 0 chr6 170363648 170363793 -12051449 - FRAM SINE Alu -30 146 1 3207 142 107 97 chr6 170363839 170364253 -12050989 + MER21B LTR ERV1 12 438 -425 2180 136 0 0 chr6 170364253 170364555 -12050687 + AluSx SINE Alu 1 302 -10 3207 142 107 97 chr6 170364555 170364871 -12050371 + MER21B LTR ERV1 438 749 -114 966 107 30 0 chr6 170365804 170365935 -12049307 - AluSq/x SINE Alu -178 135 1 183 80 0 0 chr6 170366405 170366430 -12048812 + (CA)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr6 170366593 170366617 -12048625 + AT_rich Low_complexity Low_complexity 1 24 0 2288 118 0 0 chr6 170366662 170366967 -12048275 + AluSx SINE Alu 1 305 -7 3480 144 73 100 chr6 170367148 170367946 -12047296 + LTR39 LTR ERV1 1 776 -7 2185 90 0 4 chr6 170369212 170369491 -12045751 + AluSx SINE Alu 3 280 -32 2293 100 13 0 chr6 170370344 170370645 -12044597 + AluSx SINE Alu 1 305 -7 2459 73 3 16 chr6 170371233 170371548 -12043694 - AluSp SINE Alu 0 313 3 1720 139 43 13 chr6 170371548 170371844 -12043398 - L1PA16 LINE L1 -11 6155 5851 2071 116 10 13 chr6 170372373 170372684 -12042558 + AluSq SINE Alu 1 310 -3 1933 140 11 0 chr6 170373217 170373502 -12041740 + AluSx SINE Alu 6 293 -19 2415 79 6 16 chr6 170373735 170374050 -12041192 + AluSq SINE Alu 1 312 -1 663 208 53 48 chr6 170374666 170374873 -12040369 + L2 LINE L2 2334 2541 -773 195 338 0 0 chr6 170374914 170374991 -12040251 + L2 LINE L2 2530 2606 -708 469 276 51 18 chr6 170375146 170375363 -12039879 + L2 LINE L2 2862 3085 -228 2227 125 0 0 chr6 170375686 170375998 -12039244 + AluSx SINE Alu 1 312 0 2224 105 7 10 chr6 170376010 170376315 -12038927 + AluSx SINE Alu 1 304 -8 667 158 9 0 chr6 170376323 170376437 -12038805 + FLAM_C SINE Alu 1 115 -18 23 0 0 0 chr6 170376452 170376475 -12038767 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 170376806 170376827 -12038415 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 170377021 170377043 -12038199 + AT_rich Low_complexity Low_complexity 1 22 0 211 314 12 0 chr6 170379175 170379261 -12035981 + (CTG)n Simple_repeat Simple_repeat 3 89 0 196 107 0 54 chr6 170379329 170379385 -12035857 + (CCCCG)n Simple_repeat Simple_repeat 3 55 0 2143 103 0 31 chr6 170380593 170380912 -12034330 - AluSx SINE Alu -3 309 1 1647 157 11 15 chr6 170381539 170381807 -12033435 - AluJb SINE Alu -45 267 1 577 226 119 94 chr6 170382088 170382326 -12032916 - MLT1J LTR MaLR -29 482 230 2184 123 3 3 chr6 170382326 170382628 -12032614 - AluSx SINE Alu -10 302 1 577 226 119 94 chr6 170382628 170382760 -12032482 - MLT1J LTR MaLR -281 230 103 1654 174 18 7 chr6 170382768 170383043 -12032199 + AluJo SINE Alu 1 278 -34 420 20 0 0 chr6 170383043 170383092 -12032150 + (CA)n Simple_repeat Simple_repeat 2 50 0 196 167 37 74 chr6 170383742 170383796 -12031446 - MIR SINE MIR -158 104 53 316 242 30 0 chr6 170383800 170383866 -12031376 - Tigger2a DNA MER2_type 0 444 377 1061 97 0 0 chr6 170383867 170384001 -12031241 + AluSq/x SINE Alu 2 135 -178 2186 113 0 0 chr6 170384001 170384323 -12030919 + AluSg SINE Alu 1 310 0 384 146 0 0 chr6 170384323 170384378 -12030864 + AluSg/x SINE Alu 195 249 -51 1400 144 9 0 chr6 170384384 170384606 -12030636 + AluJo SINE Alu 85 308 -4 1829 119 65 80 chr6 170384643 170385030 -12030212 - Tigger2a DNA MER2_type -53 381 1 2362 91 3 0 chr6 170386381 170386678 -12028564 + AluY SINE Alu 1 298 -13 1225 121 6 0 chr6 170387431 170387597 -12027645 + FRAM SINE Alu 1 166 -10 738 143 0 0 chr6 170388191 170388303 -12026939 + AluJo/FLAM SINE Alu 12 123 -189 1980 146 7 10 chr6 170388303 170388605 -12026637 - AluSx SINE Alu -11 301 1 345 100 0 0 chr6 170388662 170388712 -12026530 + (A)n Simple_repeat Simple_repeat 1 50 0 1168 188 22 116 chr6 170388712 170389032 -12026210 + AluJo SINE Alu 2 291 -11 2181 88 4 0 chr6 170389040 170389312 -12025930 + AluSp SINE Alu 1 273 -40 1074 104 0 0 chr6 170390011 170390146 -12025096 + AluSc SINE Alu 1 135 -174 43276 55 3 1 chr6 170390148 170396154 -12019088 + L1PA5 LINE L1 2 6023 -131 635 87 10 39 chr6 170396256 170396349 -12018893 + L1PA6 LINE L1 6047 6138 -16 198 71 0 0 chr6 170396349 170396377 -12018865 + (TA)n Simple_repeat Simple_repeat 1 28 0 1191 108 12 6 chr6 170396387 170396554 -12018688 + AluSc SINE Alu 132 299 -10 258 351 6 12 chr6 170396780 170396951 -12018291 + (CCA)n Simple_repeat Simple_repeat 3 172 0 337 342 0 0 chr6 170396963 170397118 -12018124 + (CCA)n Simple_repeat Simple_repeat 3 157 0 411 350 0 0 chr6 170397146 170397326 -12017916 + (CCA)n Simple_repeat Simple_repeat 1 180 0 384 303 0 27 chr6 170397350 170397535 -12017707 + (CCA)n Simple_repeat Simple_repeat 1 180 0 431 297 0 27 chr6 170397559 170397744 -12017498 + (CCA)n Simple_repeat Simple_repeat 1 180 0 385 296 0 43 chr6 170397767 170397953 -12017289 + (CCA)n Simple_repeat Simple_repeat 1 178 0 370 347 0 0 chr6 170397976 170398152 -12017090 + (CCA)n Simple_repeat Simple_repeat 3 178 0 386 335 0 0 chr6 170398246 170398401 -12016841 + (CCA)n Simple_repeat Simple_repeat 3 157 0 381 308 0 27 chr6 170398465 170398650 -12016592 + (CCA)n Simple_repeat Simple_repeat 1 180 0 314 312 0 13 chr6 170398705 170398859 -12016383 + (CCA)n Simple_repeat Simple_repeat 3 154 0 208 239 11 57 chr6 170400253 170400341 -12014901 + MIR SINE MIR 105 188 -74 1934 189 80 8 chr6 170400815 170401216 -12014026 - L1MDa LINE L1 -6109 431 2 2065 152 0 0 chr6 170401704 170402007 -12013235 + AluJb SINE Alu 1 303 -9 693 338 53 8 chr6 170402254 170402633 -12012609 - MLT1L LTR MaLR -6 609 214 481 276 51 17 chr6 170402716 170402927 -12012315 + MER20 DNA MER1_type 1 219 0 687 184 0 0 chr6 170403382 170403496 -12011746 - FLAM_C SINE Alu -24 119 6 3365 130 38 36 chr6 170403510 170403984 -12011258 - L1MA5 LINE L1 -2 6298 5826 309 51 0 0 chr6 170403984 170404023 -12011219 + (TG)n Simple_repeat Simple_repeat 2 40 0 3365 130 38 36 chr6 170404023 170404056 -12011186 - L1MA5 LINE L1 -474 5826 5795 1681 162 12 61 chr6 170404056 170404384 -12010858 - AluJo SINE Alu 0 312 1 3365 130 38 36 chr6 170404384 170404512 -12010730 - L1MA5 LINE L1 -505 5795 5661 21 0 0 0 chr6 170404641 170404662 -12010580 + AT_rich Low_complexity Low_complexity 1 21 0 989 190 35 15 chr6 170405131 170405331 -12009911 + MLT1A1 LTR MaLR 1 204 -161 1431 165 0 21 chr6 170405334 170405570 -12009672 + AluSg SINE Alu 6 236 -74 886 182 0 0 chr6 170405575 170405729 -12009513 + AluJb SINE Alu 146 299 -13 2126 128 10 3 chr6 170405924 170406230 -12009012 - AluSx SINE Alu -4 308 1 2044 90 3 84 chr6 170406234 170406556 -12008686 - AluSx SINE Alu -16 296 1 777 268 50 50 chr6 170406964 170407054 -12008188 - L1MC4 LINE L1 -643 7399 7310 1750 104 14 143 chr6 170407054 170407258 -12007984 - AluSp SINE Alu -3 310 81 2478 76 0 16 chr6 170407258 170407573 -12007669 - AluY SINE Alu -1 310 1 2312 91 3 26 chr6 170407574 170407882 -12007360 - AluSp SINE Alu -12 301 1 1750 104 14 143 chr6 170407882 170408031 -12007211 - AluSp SINE Alu -231 82 1 777 268 50 50 chr6 170408031 170408242 -12007000 - L1MC4 LINE L1 -731 7311 7098 1808 140 22 41 chr6 170408302 170408617 -12006625 + AluJo SINE Alu 1 309 -3 391 246 27 0 chr6 170408743 170408853 -12006389 - L1MC4 LINE L1 -990 7052 6940 2457 179 28 24 chr6 170408868 170409405 -12005837 + MER89 LTR ERV1 1 539 -20 597 217 81 35 chr6 170409407 170409605 -12005637 - L1ME1 LINE L1 -28 6138 5932 1010 188 49 9 chr6 170409616 170409803 -12005439 - L1MC4 LINE L1 -1106 6936 6737 422 244 8 50 chr6 170409803 170409922 -12005320 - MER81 DNA DNA 0 114 1 1010 188 49 9 chr6 170409922 170409957 -12005285 - L1MC4 LINE L1 -1305 6737 6705 1419 169 86 22 chr6 170409977 170410255 -12004987 - AluJo SINE Alu -16 296 1 825 135 0 38 chr6 170410361 170410494 -12004748 - FLAM_C SINE Alu -11 132 5 547 146 0 0 chr6 170410693 170410782 -12004460 - MER8 DNA MER2_type 0 239 151 1905 138 34 10 chr6 170410784 170411082 -12004160 + AluJo SINE Alu 1 305 -7 345 172 0 0 chr6 170411092 170411156 -12004086 + GA-rich Low_complexity Low_complexity 1 64 0 200 203 34 0 chr6 170411155 170411214 -12004028 + A-rich Low_complexity Low_complexity 3 63 0 * 278 245 53 53 chr6 170411255 170411349 -12003893 - MER8 DNA MER2_type -144 95 2 2141 104 14 7 chr6 170411403 170411700 -12003542 + AluSq SINE Alu 1 299 -14 314 233 142 17 chr6 170411731 170411851 -12003391 - L1MC4a LINE L1 -1550 6258 6124 237 253 13 0 chr6 170411940 170412015 -12003227 + (TA)n Simple_repeat Simple_repeat 2 77 0 541 307 67 26 chr6 170412077 170412344 -12002898 - L1MC4a LINE L1 -1940 5868 5591 352 263 45 19 chr6 170412388 170412544 -12002698 - L1MC4a LINE L1 -2376 5432 5273 371 285 173 60 chr6 170413562 170413931 -12001311 - L1M2 LINE L1 -5972 877 467 185 304 152 0 chr6 170415887 170415979 -11999263 - MIR SINE MIR -75 187 82 1667 100 0 44 chr6 170417196 170417445 -11997797 + AluSg/x SINE Alu 68 305 -5 1931 144 3 22 chr6 170417459 170417772 -11997470 + AluJo SINE Alu 1 307 -5 676 168 0 126 chr6 170418341 170418508 -11996734 + MER8 DNA MER2_type 93 238 -1 24 0 0 0 chr6 170418808 170418832 -11996410 + AT_rich Low_complexity Low_complexity 1 24 0 1992 83 43 0 chr6 170418832 170419086 -11996156 + AluSq SINE Alu 1 265 -48 222 37 0 0 chr6 170419126 170419153 -11996089 + (TC)n Simple_repeat Simple_repeat 2 28 0 288 0 0 0 chr6 170419166 170419198 -11996044 + (TG)n Simple_repeat Simple_repeat 2 33 0 1982 127 7 17 chr6 170419614 170419913 -11995329 + AluJb SINE Alu 1 296 -16 1366 91 5 11 chr6 170419913 170420100 -11995142 + AluSp SINE Alu 2 187 -126 337 109 0 0 chr6 170420200 170420255 -11994987 + AluSp/q SINE Alu 239 293 -10 715 196 0 15 chr6 170420505 170420638 -11994604 - FLAM_C SINE Alu -7 136 6 454 103 0 0 chr6 170420654 170420722 -11994520 + AluSc SINE Alu 229 296 -13 596 224 0 0 chr6 170420882 170420998 -11994244 + FLAM_A SINE Alu 24 139 -3 1977 114 27 13 chr6 170421470 170421768 -11993474 - AluSx SINE Alu -10 302 1 2210 112 0 0 chr6 170421802 170422097 -11993145 + AluSg SINE Alu 5 299 -11 491 128 83 18 chr6 170422355 170422464 -11992778 + L1MD3 LINE L1 7878 7993 -2 183 80 0 0 chr6 170423152 170423177 -11992065 + (CA)n Simple_repeat Simple_repeat 2 26 0 1771 148 0 11 chr6 170423394 170423671 -11991571 - AluJb SINE Alu -28 284 11 1606 185 33 7 chr6 170423814 170424116 -11991126 - AluJo SINE Alu -2 310 1 2918 212 85 31 chr6 170424229 170425131 -11990111 - L1MD2 LINE L1 -10 6349 5399 331 296 49 4 chr6 170425720 170425842 -11989400 + MIR3 SINE MIR 73 199 -9 297 0 0 0 chr6 170426155 170426188 -11989054 + (T)n Simple_repeat Simple_repeat 1 33 0 627 162 0 0 chr6 170426376 170426475 -11988767 - AluJ/FLAM SINE Alu -213 99 1 2248 88 7 7 chr6 170427023 170427319 -11987923 - AluSc SINE Alu 0 309 14 1308 162 150 8 chr6 170428036 170428289 -11986953 + AluJb SINE Alu 1 289 -23 192 314 57 29 chr6 170428595 170428665 -11986577 - L2 LINE L2 -38 3234 3163 1254 141 226 13 chr6 170429104 170429338 -11985904 + AluJb SINE Alu 1 284 -28 2057 139 3 0 chr6 170429372 170429675 -11985567 - AluSx SINE Alu -6 306 3 1169 169 173 8 chr6 170431063 170431311 -11983931 - AluJo SINE Alu -13 289 1 393 287 110 86 chr6 170431854 170432307 -11982935 - L2 LINE L2 -418 2896 2433 244 111 0 0 chr6 170432495 170432531 -11982711 - MER30 DNA MER1_type -194 36 1 246 225 291 73 chr6 170433640 170433791 -11981451 + MIR3 SINE MIR 17 200 -8 616 109 0 27 chr6 170434229 170434339 -11980903 - L1MA5A LINE L1 -3 6294 6188 300 255 54 39 chr6 170436872 170437076 -11978166 - L1ME4a LINE L1 -153 5968 5762 1803 147 7 10 chr6 170438110 170438409 -11976833 + AluJb SINE Alu 1 298 -14 702 219 131 16 chr6 170439096 170439279 -11975963 - AluJb SINE Alu -24 288 85 1346 170 157 10 chr6 170440851 170441151 -11974091 + MER2 DNA MER2_type 1 344 0 441 90 0 0 chr6 170442054 170442121 -11973121 + (T)n Simple_repeat Simple_repeat 1 67 0 1775 181 0 13 chr6 170442925 170443234 -11972008 - AluJo SINE Alu -7 305 1 2200 103 7 3 chr6 170443738 170444040 -11971202 - AluSg SINE Alu -7 303 1 293 173 109 73 chr6 170444563 170444673 -11970569 - MLT1A1 LTR MaLR 0 365 252 189 313 31 0 chr6 170444732 170444796 -11970446 + L2 LINE L2 1942 2007 -1307 1386 95 11 5 chr6 170445379 170445569 -11969673 - AluSp SINE Alu -3 310 120 741 235 30 0 chr6 170446062 170446228 -11969014 - MIR SINE MIR 0 262 92 2225 84 0 53 chr6 170446377 170446697 -11968545 + AluY SINE Alu 1 303 -8 2923 112 15 13 chr6 170446941 170447396 -11967846 - L1PA16 LINE L1 0 6166 5711 1996 125 11 0 chr6 170447418 170447699 -11967543 + AluSx SINE Alu 23 306 -6 207 0 0 0 chr6 170447699 170447722 -11967520 + (GA)n Simple_repeat Simple_repeat 1 23 0 488 121 0 12 chr6 170447722 170447805 -11967437 + (GAAAA)n Simple_repeat Simple_repeat 3 84 0 1859 137 9 44 chr6 170447809 170448130 -11967112 + AluSx SINE Alu 1 310 -2 300 163 294 22 chr6 170448131 170448223 -11967019 - HAL1 LINE L1 -72 2435 2319 480 277 104 13 chr6 170448226 170448457 -11966785 - MLT1J LTR MaLR -3 508 257 1016 296 140 37 chr6 170448615 170449484 -11965758 - HAL1 LINE L1 -1548 959 1 2228 107 3 0 chr6 170449838 170450127 -11965115 + AluSg SINE Alu 1 290 -20 2136 102 53 0 chr6 170451022 170451305 -11963937 + AluSx SINE Alu 3 300 -12 21 0 0 0 chr6 170451991 170452012 -11963230 + AT_rich Low_complexity Low_complexity 1 21 0 213 231 0 0 chr6 170452078 170452117 -11963125 + A-rich Low_complexity Low_complexity 2 40 0 1935 159 19 7 chr6 170452163 170452471 -11962771 + AluJb SINE Alu 1 312 0 206 254 0 15 chr6 170452802 170452869 -11962373 + A-rich Low_complexity Low_complexity 4 69 0 227 296 9 0 chr6 170452874 170452982 -11962260 + L1M4 LINE L1 2429 2537 -3609 2175 103 0 3 chr6 170453483 170453773 -11961469 + AluSg SINE Alu 18 306 -4 709 177 21 44 chr6 170453774 170453985 -11961257 + L1ME1 LINE L1 5236 5441 -744 1356 126 23 9 chr6 170453985 170454199 -11961043 + AluJb SINE Alu 87 303 -9 436 154 10 39 chr6 170454300 170454404 -11960838 + L1ME1 LINE L1 5629 5729 -435 1841 134 62 0 chr6 170454453 170454729 -11960513 + AluSx SINE Alu 1 293 -19 1021 232 124 67 chr6 170454735 170455117 -11960125 - MER34B LTR ERV1 -46 519 101 2131 122 3 3 chr6 170455117 170455420 -11959822 - AluSx SINE Alu -9 303 1 1021 232 124 67 chr6 170455420 170455528 -11959714 - MER34B LTR ERV1 -464 101 1 906 198 24 0 chr6 170455532 170455739 -11959503 + L1ME1 LINE L1 5731 5942 -224 1357 210 139 33 chr6 170455758 170456399 -11958843 + LTR48 LTR ERV1 1 593 -2 399 214 94 68 chr6 170456400 170456592 -11958650 + L1ME1 LINE L1 5956 6152 -14 265 131 33 0 chr6 170456722 170456783 -11958459 + (TA)n Simple_repeat Simple_repeat 1 63 0 1654 168 0 55 chr6 170456975 170457285 -11957957 + AluJo SINE Alu 6 298 -14 698 183 49 62 chr6 170458132 170458210 -11957032 - MER106A DNA MER1_type -15 221 143 1353 234 91 76 chr6 170458210 170458813 -11956429 + LTR9 LTR ERV1 1 612 0 698 183 49 62 chr6 170458813 170458958 -11956284 - MER106A DNA MER1_type -93 143 1 186 43 0 0 chr6 170459238 170459261 -11955981 + (GA)n Simple_repeat Simple_repeat 2 24 0 410 259 194 59 chr6 170460521 170460892 -11954350 + MLT1L LTR MaLR 187 607 -8 2278 111 0 3 chr6 170462240 170462546 -11952696 + AluJb SINE Alu 1 305 -7 252 236 0 0 chr6 170462551 170462606 -11952636 + CT-rich Low_complexity Low_complexity 1 55 0 2240 118 3 7 chr6 170462944 170463249 -11951993 - AluSx SINE Alu -8 304 1 22 70 0 0 chr6 170463555 170463598 -11951644 + AT_rich Low_complexity Low_complexity 1 43 0 297 0 0 0 chr6 170463643 170463676 -11951566 + (CA)n Simple_repeat Simple_repeat 2 34 0 324 245 50 125 chr6 170463944 170464013 -11951229 - L2 LINE L2 -1 3312 3239 306 0 0 0 chr6 170464013 170464047 -11951195 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1547 211 7 4 chr6 170464049 170464329 -11950913 - AluJo SINE Alu -31 281 1 324 245 50 125 chr6 170464329 170464456 -11950786 - L2 LINE L2 -75 3238 3128 298 270 0 0 chr6 170464723 170464786 -11950456 + polypurine Low_complexity Low_complexity 3 65 0 1369 144 0 10 chr6 170464791 170464999 -11950243 + AluSg/x SINE Alu 85 290 -20 249 264 14 14 chr6 170465028 170465172 -11950070 + GA-rich Low_complexity Low_complexity 3 146 0 228 188 38 12 chr6 170465216 170465296 -11949946 + L2 LINE L2 2723 2804 -510 736 274 80 38 chr6 170465344 170465683 -11949559 + L2 LINE L2 2961 3313 0 27 29 0 0 chr6 170465795 170465829 -11949413 + AT_rich Low_complexity Low_complexity 1 34 0 726 140 0 0 chr6 170465832 170465939 -11949303 + FLAM_C SINE Alu 1 107 -36 700 238 43 48 chr6 170465972 170466203 -11949039 - MIR SINE MIR -20 242 13 313 313 91 25 chr6 170467170 170467368 -11947874 - L2 LINE L2 -18 3254 3044 4336 203 45 25 chr6 170467946 170468708 -11946534 + MER45B DNA AcHobo 1 791 -790 2369 94 0 28 chr6 170468708 170469028 -11946214 + AluSx SINE Alu 1 311 -1 4336 203 45 25 chr6 170469028 170469283 -11945959 + MER45B DNA AcHobo 791 1039 -1 302 185 206 0 chr6 170469285 170469377 -11945865 + L1MC4 LINE L1 6595 6705 -1337 222 242 0 0 chr6 170469381 170469447 -11945795 + (TATG)n Simple_repeat Simple_repeat 2 67 0 236 311 0 0 chr6 170469449 170469539 -11945703 - L1MC4 LINE L1 -1339 6703 6614 228 322 0 0 chr6 170469541 170469631 -11945611 - L1MC4 LINE L1 -1339 6703 6614 491 17 0 0 chr6 170469744 170469802 -11945440 + AluY SINE Alu 239 296 -14 247 300 237 21 chr6 170470283 170470395 -11944847 - L2 LINE L2 -862 2452 2366 2050 119 7 3 chr6 170470395 170470688 -11944554 - AluSx SINE Alu -18 294 1 247 300 237 21 chr6 170470688 170470912 -11944330 - L2 LINE L2 -948 2366 2043 323 204 0 46 chr6 170471932 170472040 -11943202 + C-rich Low_complexity Low_complexity 5 107 0 243 79 0 0 chr6 170473223 170473261 -11941981 + (CA)n Simple_repeat Simple_repeat 2 39 0 1707 143 59 14 chr6 170473388 170473674 -11941568 + AluJo SINE Alu 1 299 -13 396 250 27 18 chr6 170473738 170473850 -11941392 - L2 LINE L2 -2 3270 3158 36 0 0 0 chr6 170473975 170474011 -11941231 + AT_rich Low_complexity Low_complexity 1 36 0 1044 155 20 45 chr6 170474011 170474211 -11941031 - AluJo SINE Alu -30 282 88 363 217 0 0 chr6 170474213 170474273 -11940969 - FAM SINE Alu -49 126 67 454 265 93 0 chr6 170474316 170474478 -11940764 - MIR SINE MIR -38 224 48 465 236 9 9 chr6 170474511 170474621 -11940621 - L2 LINE L2 -3 3310 3201 2328 112 0 0 chr6 170474666 170474969 -11940273 - AluSx SINE Alu -9 303 1 2130 107 7 29 chr6 170474979 170475289 -11939953 - AluSx SINE Alu -9 303 1 2333 86 3 0 chr6 170475960 170476250 -11938992 - AluSp SINE Alu -18 295 5 280 188 43 29 chr6 170477458 170477527 -11937715 - MIR SINE MIR -82 180 111 338 207 23 11 chr6 170478358 170478445 -11936797 - MIR3 SINE MIR -10 198 111 187 295 33 0 chr6 170478646 170478707 -11936535 - MIR SINE MIR -120 142 80 312 91 0 0 chr6 170479016 170479060 -11936182 + MLT1B LTR MaLR 296 339 -51 1158 277 85 77 chr6 170479083 170480083 -11935159 + L1MEc LINE L1 46 1036 -5360 878 158 0 0 chr6 170480083 170480216 -11935026 + FLAM_C SINE Alu 1 133 0 1158 277 85 77 chr6 170480216 170480336 -11934906 + L1MEc LINE L1 1036 1154 -5242 2074 134 3 0 chr6 170480336 170480620 -11934622 + AluSx SINE Alu 1 285 -27 252 0 0 0 chr6 170480620 170480648 -11934594 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2238 99 7 0 chr6 170480653 170480945 -11934297 + AluSx SINE Alu 1 294 -18 1158 277 85 77 chr6 170480945 170481062 -11934180 + L1MEc LINE L1 1157 1301 -5095 489 116 0 0 chr6 170481153 170481222 -11934020 + AluS SINE Alu 231 299 -11 651 191 12 111 chr6 170481298 170481460 -11933782 + FAM SINE Alu 1 146 -39 198 0 0 0 chr6 170481461 170481483 -11933759 + (CAA)n Simple_repeat Simple_repeat 3 24 0 2046 116 0 11 chr6 170481496 170481811 -11933431 + AluY SINE Alu 1 312 0 1336 241 82 0 chr6 170481818 170482195 -11933047 + L1M4 LINE L1 4657 5064 -1082 924 181 0 34 chr6 170482200 170482377 -11932865 + FAM SINE Alu 4 174 -1 1411 160 106 4 chr6 170482450 170482706 -11932536 - AluJb SINE Alu -30 282 1 2912 191 118 124 chr6 170482708 170484003 -11931239 + L1MC4 LINE L1 6505 7793 -249 1819 124 55 24 chr6 170484003 170484293 -11930949 - AluJo SINE Alu -13 299 1 2912 191 118 124 chr6 170484293 170484475 -11930767 + L1MC4 LINE L1 7793 7974 -68 843 186 0 19 chr6 170485918 170486074 -11929168 - FRAM SINE Alu -24 152 1 2190 108 7 0 chr6 170486344 170486639 -11928603 - AluSx SINE Alu -15 297 1 1418 180 72 4 chr6 170487120 170487398 -11927844 - AluJo SINE Alu -15 297 1 225 0 0 0 chr6 170487977 170488002 -11927240 + (A)n Simple_repeat Simple_repeat 1 25 0 2311 92 7 3 chr6 170491043 170491348 -11923894 + AluSq SINE Alu 1 306 -7 366 307 181 8 chr6 170492039 170492293 -11922949 - L2 LINE L2 -755 2559 2262 197 197 182 0 chr6 170492414 170492480 -11922762 - L2 LINE L2 -1306 2008 1931 934 172 25 6 chr6 170492932 170493095 -11922147 - FRAM SINE Alu 0 166 1 2309 102 0 3 chr6 170493853 170494156 -11921086 - AluSg SINE Alu -8 302 1 639 205 0 0 chr6 170494769 170494881 -11920361 - FLAM_A SINE Alu -18 115 4 617 226 116 32 chr6 170495722 170495912 -11919330 + MER6B DNA MER2_type 5 210 0 1365 182 33 36 chr6 170496517 170496819 -11918423 + AluJo SINE Alu 1 301 -1 309 173 62 7 chr6 170497860 170498088 -11917154 + AluJo SINE Alu 1 290 -12 22 35 0 0 chr6 170499187 170499216 -11916026 + GC_rich Low_complexity Low_complexity 1 29 0 336 301 105 49 chr6 170500817 170501171 -11914071 - L2 LINE L2 -213 3100 2688 1929 103 64 14 chr6 170501171 170501452 -11913790 + AluSx SINE Alu 1 295 -17 336 301 105 49 chr6 170501452 170501525 -11913717 - L2 LINE L2 -625 2688 2621 456 266 124 44 chr6 170501560 170501786 -11913456 - MIR SINE MIR -14 248 5 192 350 103 21 chr6 170501918 170502015 -11913227 - L2 LINE L2 0 3272 3168 951 188 0 6 chr6 170502187 170502357 -11912885 - AluJb SINE Alu -10 302 134 1547 177 6 78 chr6 170502357 170502679 -11912563 - AluJb SINE Alu -13 299 1 1108 209 134 23 chr6 170502852 170503159 -11912083 + MER58B DNA MER1_type 1 341 0 2548 47 0 10 chr6 170503180 170503477 -11911765 + AluY SINE Alu 1 294 -17 650 261 115 0 chr6 170503825 170504051 -11911191 + MIR SINE MIR 10 261 -1 407 266 69 116 chr6 170504198 170504289 -11910953 - L1M4 LINE L1 -743 5403 5309 8259 53 10 0 chr6 170504289 170505248 -11909994 - LTR5 LTR ERVK 0 969 1 407 266 69 116 chr6 170505248 170505335 -11909907 - L1M4 LINE L1 -837 5309 5219 1898 159 7 3 chr6 170505335 170505636 -11909606 - AluJb SINE Alu -10 302 1 407 266 69 116 chr6 170505636 170505751 -11909491 - L1M4 LINE L1 -927 5219 5100 1777 169 7 3 chr6 170505751 170506047 -11909195 + AluJb SINE Alu 1 297 -15 407 266 69 116 chr6 170506047 170506058 -11909184 - L1M4 LINE L1 -1046 5100 5090 1613 199 21 0 chr6 170506058 170506349 -11908893 + AluJo SINE Alu 1 297 -15 407 266 69 116 chr6 170506349 170506488 -11908754 - L1M4 LINE L1 -1056 5090 4978 417 286 152 17 chr6 170507138 170507369 -11907873 - MIR SINE MIR 0 262 1 183 290 0 32 chr6 170508041 170508103 -11907139 + MIR SINE MIR 200 259 -3 1910 152 17 0 chr6 170508728 170509018 -11906224 + AluSx SINE Alu 4 298 -14 1670 195 7 3 chr6 170511000 170511298 -11903944 - AluJo SINE Alu -13 299 1 1554 114 0 0 chr6 170511448 170511658 -11903584 - AluSg/x SINE Alu -20 292 83 538 263 0 36 chr6 170511684 170511821 -11903421 - MER58A DNA MER1_type 0 162 31 429 220 100 0 chr6 170511860 170511960 -11903282 - FLAM_A SINE Alu -32 110 1 2175 110 0 7 chr6 170512153 170512435 -11902807 - AluSx SINE Alu -32 280 1 225 307 57 23 chr6 170513314 170513402 -11901840 + L2 LINE L2 3197 3287 -26 2116 95 57 11 chr6 170513673 170513956 -11901286 - AluSx SINE Alu -16 296 1 3689 198 84 117 chr6 170515993 170516441 -11898801 + Charlie1a DNA MER1_type 2 463 -2298 2372 109 0 0 chr6 170516441 170516745 -11898497 - AluSq SINE Alu -9 304 1 3689 198 84 117 chr6 170516745 170516835 -11898407 + Charlie1a DNA MER1_type 463 554 -2207 443 262 48 16 chr6 170516835 170516961 -11898281 + FLAM_C SINE Alu 2 131 -12 3689 198 84 117 chr6 170516961 170517461 -11897781 + Charlie1a DNA MER1_type 554 1109 -1652 2433 95 0 0 chr6 170517461 170517766 -11897476 - AluSx SINE Alu -7 305 1 3689 198 84 117 chr6 170517766 170518088 -11897154 + Charlie1a DNA MER1_type 1109 1440 -15 1753 169 3 42 chr6 170518833 170519146 -11896096 - AluJb SINE Alu -11 301 1 218 194 125 0 chr6 170520246 170520318 -11894924 + MIR SINE MIR 124 204 -58 365 239 209 30 chr6 170520319 170520549 -11894693 + HAL1 LINE L1 1852 2122 -385 358 253 143 65 chr6 170520662 170520816 -11894426 + HAL1 LINE L1 2334 2499 -8 2130 85 7 18 chr6 170521413 170521752 -11893490 - AluSc SINE Alu 0 336 1 409 312 89 0 chr6 170522077 170522234 -11893008 - MER5B DNA MER1_type -4 174 4 1835 184 0 7 chr6 170522292 170522596 -11892646 + AluJb SINE Alu 1 302 -10 958 208 23 23 chr6 170524219 170524435 -11890807 + MIR SINE MIR 19 234 -28 234 222 0 0 chr6 170525667 170525757 -11889485 + C-rich Low_complexity Low_complexity 1 90 0 1529 153 21 102 chr6 170526183 170526517 -11888725 - AluYb8 SINE Alu -11 307 1 433 266 119 17 chr6 170529071 170529248 -11885994 - L2 LINE L2 -18 3295 3101 315 290 0 28 chr6 170529629 170529736 -11885506 - L2 LINE L2 -822 2492 2389 1613 147 25 46 chr6 170531029 170531314 -11883928 - AluJo SINE Alu -23 289 11 1522 194 48 14 chr6 170533467 170533818 -11881424 - MLT1A2 LTR MaLR -11 363 1 1999 114 0 60 chr6 170534124 170534278 -11880964 + AluSx SINE Alu 1 128 -184 2197 98 3 16 chr6 170534278 170534584 -11880658 + AluSq SINE Alu 12 313 0 1999 114 0 60 chr6 170534584 170534745 -11880497 + AluSx SINE Alu 128 297 -15 342 254 108 0 chr6 170534829 170534959 -11880283 + MER104 DNA Tc2 9 152 -28 394 316 53 0 chr6 170535294 170535465 -11879777 - MER104 DNA MER2_type 0 180 1 2217 173 26 17 chr6 170536091 170536513 -11878729 - MSTB LTR MaLR 0 426 1 272 369 10 0 chr6 170536586 170536689 -11878553 - MIR SINE MIR -15 247 144 180 77 0 0 chr6 170536837 170536863 -11878379 + (T)n Simple_repeat Simple_repeat 1 26 0 1676 117 185 22 chr6 170537209 170537247 -11877995 - MSTA LTR MaLR -1 427 397 2353 108 10 0 chr6 170537247 170537554 -11877688 + AluSx SINE Alu 2 311 -1 1676 117 185 22 chr6 170537554 170537882 -11877360 - MSTA LTR MaLR -31 397 1 2193 119 7 13 chr6 170538317 170538620 -11876622 + AluSq SINE Alu 1 301 -12 1805 163 26 10 chr6 170538631 170538937 -11876305 + AluJb SINE Alu 1 311 -1 313 306 54 41 chr6 170538945 170539092 -11876150 + L1ME4a LINE L1 5970 6118 -3 1717 201 39 59 chr6 170539216 170539728 -11875514 - MLT1D LTR MaLR -3 502 1 191 322 175 18 chr6 170540751 170541263 -11873979 - L2 LINE L2 -5 3308 2710 383 227 125 11 chr6 170541279 170541444 -11873798 - L2 LINE L2 -706 2608 2420 2567 193 6 6 chr6 170541444 170541930 -11873312 + MER66B LTR ERV1 1 486 0 904 134 24 0 chr6 170542140 170542267 -11872975 + AluJo SINE Alu 5 134 -178 354 273 33 20 chr6 170542270 170542420 -11872822 + Charlie7 DNA MER1_type 2457 2608 -4 1592 199 17 14 chr6 170542840 170543132 -11872110 - AluJo SINE Alu -19 293 1 200 304 0 0 chr6 170543856 170543912 -11871330 + C-rich Low_complexity Low_complexity 1 56 0 386 202 52 185 chr6 170544090 170544146 -11871096 + LTR37B LTR ERV1 1 63 -405 1728 156 15 84 chr6 170544146 170544480 -11870762 - AluJo SINE Alu -1 311 1 386 202 52 185 chr6 170544480 170544849 -11870393 + LTR37B LTR ERV1 63 369 -99 198 0 0 0 chr6 170545576 170545598 -11869644 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1075 64 0 0 chr6 170545602 170545727 -11869515 - AluSq/x SINE Alu -187 125 1 277 299 161 0 chr6 170546309 170546483 -11868759 - LTR33A LTR ERVL -2 521 320 1641 160 0 19 chr6 170547201 170547470 -11867772 + AluJo SINE Alu 35 298 -14 786 213 17 50 chr6 170547545 170547825 -11867417 - LOR1a LTR ERV1 0 497 192 287 125 89 0 chr6 170547832 170547888 -11867354 - LOR1a LTR ERV1 -199 298 238 520 291 70 43 chr6 170548033 170548332 -11866910 + L2 LINE L2 3006 3312 -1 2306 94 0 0 chr6 170548707 170548994 -11866248 - AluY SINE Alu -10 301 15 2240 95 6 31 chr6 170549354 170549671 -11865571 - AluSc SINE Alu 0 309 1 1801 159 93 8 chr6 170550090 170550469 -11864773 + L1MB8 LINE L1 5769 6177 -1 2173 102 53 0 chr6 170550480 170550765 -11864477 + AluSx SINE Alu 1 300 -12 1761 132 71 25 chr6 170550768 170551049 -11864193 + AluSx SINE Alu 3 296 -16 371 143 0 0 chr6 170551072 170551135 -11864107 + LTR30 LTR ERV1 552 614 -108 216 97 0 0 chr6 170551149 170551180 -11864062 + (A)n Simple_repeat Simple_repeat 1 31 0 2412 96 0 0 chr6 170552276 170552579 -11862663 - AluY SINE Alu 0 311 9 2350 95 0 3 chr6 170552590 170552885 -11862357 - AluSc SINE Alu -15 294 1 2200 125 0 0 chr6 170552885 170553180 -11862062 - AluSx SINE Alu -17 295 1 1638 194 17 7 chr6 170553360 170553659 -11861583 - AluJo SINE Alu -9 303 2 425 121 0 0 chr6 170553820 170553886 -11861356 + Alu SINE Alu 232 297 -14 262 325 25 33 chr6 170554030 170554150 -11861092 - MIR SINE MIR -97 165 47 668 128 105 30 chr6 170555127 170555260 -11859982 + MLT1C LTR MaLR 3 145 -322 276 145 26 79 chr6 170555513 170555589 -11859653 - L2 LINE L2 -8 3305 3234 322 268 39 52 chr6 170555626 170555779 -11859463 + L2 LINE L2 3163 3313 0 779 164 8 0 chr6 170556366 170556494 -11858748 - FLAM_A SINE Alu -4 129 1 237 225 12 25 chr6 170557045 170557125 -11858117 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 1952 120 24 51 chr6 170557266 170557640 -11857602 + THE1B LTR MaLR 1 364 0 11753 79 6 9 chr6 170557640 170558394 -11856848 + THE1B-int LTR MaLR 1 756 -824 2313 117 0 0 chr6 170558394 170558685 -11856557 + AluSg SINE Alu 4 294 -16 11753 79 6 9 chr6 170558685 170559515 -11855727 + THE1B-int LTR MaLR 756 1580 0 2140 117 24 53 chr6 170559515 170559890 -11855352 + THE1B LTR MaLR 1 364 0 2265 114 8 44 chr6 170559909 170560263 -11854979 + L1MA7 LINE L1 5920 6260 -31 1669 160 3 26 chr6 170560263 170560569 -11854673 - AluJb SINE Alu -13 299 1 2265 114 8 44 chr6 170560569 170560600 -11854642 + L1MA7 LINE L1 6260 6291 0 298 261 29 0 chr6 170560631 170560700 -11854542 - L2 LINE L2 -16 3256 3186 183 339 31 0 chr6 170560803 170560868 -11854374 + L2 LINE L2 3246 3312 -1 2118 107 10 7 chr6 170561013 170561321 -11853921 - AluSx SINE Alu -3 309 1 2145 91 0 10 chr6 170561829 170562127 -11853115 - AluSc SINE Alu -14 295 1 367 294 43 108 chr6 170562603 170562926 -11852316 - L1MC/D LINE L1 -2251 5557 5256 1917 113 17 46 chr6 170563048 170563350 -11851892 - AluSx SINE Alu -18 294 2 770 136 32 0 chr6 170563858 170563983 -11851259 - AluJb SINE Alu -2 310 182 555 269 123 22 chr6 170564284 170564511 -11850731 + MIR SINE MIR 7 256 -6 5313 150 28 44 chr6 170564942 170565452 -11849790 - L1MA5 LINE L1 0 7002 6485 339 44 0 0 chr6 170565452 170565497 -11849745 + (CA)n Simple_repeat Simple_repeat 2 46 0 5313 150 28 44 chr6 170565497 170565832 -11849410 - L1MA5 LINE L1 -517 6485 6146 225 23 23 45 chr6 170565832 170565876 -11849366 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2116 103 0 0 chr6 170565882 170566163 -11849079 - AluSx SINE Alu -31 281 1 5313 150 28 44 chr6 170566163 170566658 -11848584 - L1MA5 LINE L1 -861 6141 5676 * 5820 204 92 23 chr6 170566643 170568141 -11847101 - L1MA5 LINE L1 -4138 2711 1111 311 192 40 60 chr6 170568149 170568300 -11846942 - HAL1 LINE L1 -358 2149 2002 1060 240 64 53 chr6 170568622 170568830 -11846412 - L1MC5 LINE L1 -50 7911 7707 1747 173 13 3 chr6 170568830 170569136 -11846106 + AluJb SINE Alu 3 311 -1 1060 240 64 53 chr6 170569136 170569382 -11845860 - L1MC5 LINE L1 -254 7707 7452 334 183 243 30 chr6 170569392 170569561 -11845681 - L1MC5 LINE L1 -548 7413 7209 898 156 0 100 chr6 170569567 170569747 -11845495 + MER20 DNA MER1_type 10 171 -48 1862 193 33 0 chr6 170569754 170570086 -11845156 - MER7A DNA MER2_type -5 341 1 241 270 0 22 chr6 170570127 170570216 -11845026 - L1MC5 LINE L1 -749 7212 7126 225 234 79 89 chr6 170570245 170570548 -11844694 - L1MC5 LINE L1 -142 7819 7520 303 191 29 0 chr6 170570585 170570653 -11844589 - HAL1 LINE L1 -849 1658 1589 256 296 221 55 chr6 170570656 170570878 -11844364 + MLT1L LTR MaLR 9 193 -422 2261 88 0 0 chr6 170570878 170571172 -11844070 - AluSx SINE Alu -18 294 1 256 296 221 55 chr6 170571172 170571334 -11843908 + MLT1L LTR MaLR 193 457 -158 282 229 0 14 chr6 170571463 170571533 -11843709 - HAL1 LINE L1 -910 1597 1529 * 468 191 114 8 chr6 170571532 170571663 -11843579 - L1MD2 LINE L1 -4 6355 6211 689 287 67 7 chr6 170571673 170571955 -11843287 - HAL1 LINE L1 -964 1543 1245 1293 195 37 16 chr6 170572138 170572626 -11842616 - MLT1E1 LTR MaLR 0 654 11 1724 149 20 10 chr6 170573095 170573390 -11841852 - AluJb SINE Alu -14 298 1 23 0 0 0 chr6 170573539 170573562 -11841680 + AT_rich Low_complexity Low_complexity 1 23 0 4004 28 0 0 chr6 170573562 170574023 -11841219 - L1PA4 LINE L1 -4 6151 5691 1474 49 191 105 chr6 170574051 170574136 -11841106 + AluSc SINE Alu 1 77 -232 2390 66 0 3 chr6 170574136 170574441 -11840801 + L1PA7 LINE L1 5843 6146 -8 1474 49 191 105 chr6 170574441 170574622 -11840620 + AluSc SINE Alu 77 290 -19 1634 199 131 34 chr6 170574854 170575423 -11839819 - MER21B LTR ERV1 -107 756 94 279 261 31 0 chr6 170575547 170575612 -11839630 - MER21B LTR ERV1 -773 90 24 1762 92 0 0 chr6 170575621 170575859 -11839383 - AluSg SINE Alu -10 300 63 1252 251 99 14 chr6 170577116 170577531 -11837711 + MLT1C LTR MaLR 18 467 0 263 167 197 0 chr6 170577562 170577628 -11837614 - Zaphod DNA AcHobo -2 4029 3951 3834 130 18 90 chr6 170577640 170578426 -11836816 + L1MB4 LINE L1 5448 6176 -4 309 116 58 0 chr6 170578426 170578495 -11836747 - Zaphod DNA AcHobo -77 3954 3882 1712 153 19 19 chr6 170578510 170578818 -11836424 - AluSx SINE Alu -4 308 1 4501 174 36 52 chr6 170578831 170580772 -11834470 - L1MA3 LINE L1 0 6305 4402 1719 306 38 6 chr6 170580772 170581305 -11833937 - MER115 DNA AcHobo -134 559 10 952 304 90 35 chr6 170581387 170581907 -11833335 + LTR67 LTR ERVL 9 557 0 2450 142 27 40 chr6 170582095 170582546 -11832696 + L1MB3 LINE L1 5735 6179 -4 1832 157 3 0 chr6 170582555 170582842 -11832400 + AluJb SINE Alu 1 288 -24 2024 151 66 32 chr6 170584374 170584751 -11830491 + MLT1B LTR MaLR 1 390 0 2427 184 20 7 chr6 170584905 170585356 -11829886 + MSTB2 LTR MaLR 1 457 0 896 172 6 0 chr6 170586301 170586458 -11828784 - L1PB4 LINE L1 -1 6155 5998 353 277 27 0 chr6 170586568 170586680 -11828562 - L1ME2 LINE L1 0 6164 6050 1625 194 114 35 chr6 170587014 170587436 -11827806 + MLT1C LTR MaLR 1 455 -12 566 267 20 7 chr6 170587685 170587835 -11827407 - MIR SINE MIR -41 221 70 2313 145 37 53 chr6 170588649 170588688 -11826554 - MSTA LTR MaLR -1 427 389 2457 74 0 0 chr6 170588688 170588998 -11826244 + AluY SINE Alu 1 310 -1 2313 145 37 53 chr6 170588998 170589231 -11826011 - MSTA LTR MaLR -39 389 154 333 0 0 0 chr6 170589231 170589268 -11825974 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1449 36 0 0 chr6 170589268 170589436 -11825806 - L1PA4 LINE L1 -18 6137 5970 2313 145 37 53 chr6 170589436 170589595 -11825647 - MSTA LTR MaLR -272 156 1 812 215 0 45 chr6 170590047 170590224 -11825018 - AluJb SINE Alu -17 295 127 1377 157 94 0 chr6 170590759 170590867 -11824375 + AluJo SINE Alu 4 100 -218 291 114 0 0 chr6 170590867 170590911 -11824331 + (TA)n Simple_repeat Simple_repeat 2 45 0 1377 157 94 0 chr6 170590911 170591093 -11824149 + AluJo SINE Alu 100 318 0 708 42 0 11 chr6 170591387 170591482 -11823760 + AluY SINE Alu 217 310 -1 379 286 75 40 chr6 170592422 170592621 -11822621 - L1ME2 LINE L1 -584 5537 5331 2217 96 0 19 chr6 170592773 170593085 -11822157 + AluSx SINE Alu 1 306 -6 3243 240 42 38 chr6 170593503 170593947 -11821295 - L1ME2 LINE L1 -9 6155 5714 1872 152 3 0 chr6 170593947 170594291 -11820951 - AluSx SINE Alu 0 312 1 3243 240 42 38 chr6 170594291 170594628 -11820614 - L1ME2 LINE L1 -450 5714 5380 2049 113 7 0 chr6 170594628 170594930 -11820312 - AluY SINE Alu -7 304 1 3243 240 42 38 chr6 170594930 170595520 -11819722 - L1ME2 LINE L1 -784 5380 4771 405 125 0 0 chr6 170595520 170595576 -11819666 - AluS SINE Alu -253 57 2 305 191 0 8 chr6 170595576 170595639 -11819603 - L1ME2 LINE L1 -1373 4773 4713 411 193 11 11 chr6 170596033 170596121 -11819121 + MIR SINE MIR 93 180 -82 225 0 0 0 chr6 170596132 170596157 -11819085 + (A)n Simple_repeat Simple_repeat 1 25 0 203 138 0 155 chr6 170598950 170599008 -11816234 - L2 LINE L2 -2816 498 450 373 278 120 8 chr6 170600138 170600271 -11814971 - MIR SINE MIR -61 201 54 1204 175 20 0 chr6 170601418 170601618 -11813624 - MER20 DNA MER1_type 0 219 16 210 250 0 36 chr6 170601981 170602037 -11813205 + CT-rich Low_complexity Low_complexity 3 56 0 1736 212 32 27 chr6 170603056 170603466 -11811776 + L1MC4 LINE L1 6459 6870 -1172 609 292 38 47 chr6 170603533 170603772 -11811470 - L2 LINE L2 -942 2372 2135 1486 117 0 9 chr6 170603772 170603995 -11811247 + AluSg/x SINE Alu 84 304 -6 609 292 38 47 chr6 170603995 170604097 -11811145 - L2 LINE L2 -1179 2135 2034 302 246 126 78 chr6 170604767 170604926 -11810316 + MIR3 SINE MIR 34 198 -10 897 277 84 74 chr6 170605102 170605579 -11809663 + L1ME4a LINE L1 5312 5803 -318 1541 151 55 4 chr6 170605579 170605883 -11809359 + AluJb SINE Alu 1 318 0 897 277 84 74 chr6 170605883 170606132 -11809110 + L1ME4a LINE L1 5803 6048 -73 3276 150 17 90 chr6 170606243 170606406 -11808836 - LTR8 LTR ERV1 0 691 518 2204 60 0 3 chr6 170606406 170606726 -11808516 - AluY SINE Alu 0 319 1 3276 150 17 90 chr6 170606726 170607306 -11807936 - LTR8 LTR ERV1 -173 518 1 2024 128 3 0 chr6 170607446 170607744 -11807498 - AluSx SINE Alu -13 299 1 885 51 0 77 chr6 170608043 170608238 -11807004 + (TCC)n Simple_repeat Simple_repeat 1 180 0 451 114 45 38 chr6 170608242 170608374 -11806868 + CT-rich Low_complexity Low_complexity 3 135 0 1850 133 3 48 chr6 170608996 170609290 -11805952 + AluJo SINE Alu 1 301 0 181 0 0 0 chr6 170609290 170609310 -11805932 + (CAAAA)n Simple_repeat Simple_repeat 1 175 0 2219 114 0 0 chr6 170609318 170609626 -11805616 + AluSg SINE Alu 1 308 -2 238 273 182 0 chr6 170610361 170610460 -11804782 - L2 LINE L2 -9 3304 3188 1762 178 41 51 chr6 170610461 170610855 -11804387 - MLT1B LTR MaLR 0 390 1 1538 159 74 19 chr6 170610882 170611153 -11804089 + AluJo SINE Alu 1 286 -26 25 0 0 0 chr6 170611154 170611179 -11804063 + AT_rich Low_complexity Low_complexity 1 25 0 1090 184 5 19 chr6 170611215 170611422 -11803820 + AluJo SINE Alu 96 299 -13 1208 258 25 6 chr6 170611879 170612197 -11803045 + MER33 DNA MER1_type 1 324 0 2873 279 145 33 chr6 170612287 170614772 -11800470 + L2 LINE L2 518 3273 -40 2211 92 10 3 chr6 170615313 170615605 -11799637 + AluSx SINE Alu 1 294 -18 516 267 61 0 chr6 170617844 170618009 -11797233 + MIR SINE MIR 81 255 -7 324 0 0 0 chr6 170618062 170618098 -11797144 + (CA)n Simple_repeat Simple_repeat 1 36 0 417 192 88 8 chr6 170620026 170620151 -11795091 + L2 LINE L2 3119 3253 -60 272 370 102 35 chr6 170620181 170620819 -11794423 + L2 LINE L2 1640 2320 -994 1298 114 0 0 chr6 170620875 170621051 -11794191 - AluSg/x SINE Alu 0 312 137 607 281 46 28 chr6 170621221 170621548 -11793694 + L2 LINE L2 1304 1636 -1678 2409 95 0 0 chr6 170622633 170622929 -11792313 + AluSx SINE Alu 1 296 -16 410 268 135 28 chr6 170622951 170623237 -11792005 - MLT1G3 LTR MaLR -42 500 156 609 270 106 18 chr6 170623642 170623916 -11791326 - L1M3b LINE L1 -4862 1419 1122 669 331 74 27 chr6 170624183 170624669 -11790573 - L1M3b LINE L1 -5764 517 9 532 221 36 0 chr6 170625223 170625363 -11789879 - LTR16C LTR ERVL 0 491 347 1784 153 38 0 chr6 170625758 170626071 -11789171 + L1MB3 LINE L1 5857 6181 -2 1116 228 92 7 chr6 170626322 170626616 -11788626 - MER58B DNA MER1_type -20 321 3 506 304 39 35 chr6 170626627 170626887 -11788355 - MARNA DNA Mariner -155 431 171 2197 164 6 6 chr6 170627841 170628206 -11787036 + MLT1A1 LTR MaLR 1 365 0 525 113 0 12 chr6 170629544 170629624 -11785618 - MADE1 DNA Mariner -1 79 1 324 0 0 0 chr6 170629781 170629817 -11785425 + (TA)n Simple_repeat Simple_repeat 1 36 0 1085 254 118 47 chr6 170630008 170630559 -11784683 - L1ME3A LINE L1 -220 5950 5361 577 158 109 77 chr6 170630560 170630743 -11784499 + MLT1C LTR MaLR 6 194 -273 612 101 0 0 chr6 170630745 170630824 -11784418 + THE1B LTR MaLR 1 79 -285 419 169 0 0 chr6 170630822 170630887 -11784355 + THE1C LTR MaLR 304 368 -7 * 11741 93 10 1 chr6 170630888 170632451 -11782791 + THE1B-int LTR MaLR 3 1580 0 1934 147 38 22 chr6 170632451 170632771 -11782471 + THE1B LTR MaLR 1 325 -39 528 248 29 7 chr6 170632790 170632927 -11782315 + MLT1C LTR MaLR 226 365 -102 354 215 75 0 chr6 170633105 170633198 -11782044 + LTR16C LTR ERVL 386 485 -6 631 241 63 33 chr6 170633212 170633544 -11781698 - L1ME3A LINE L1 -1488 4658 4317 502 167 20 0 chr6 170633630 170633732 -11781510 - Charlie4 DNA MER1_type -34 1927 1824 2215 136 19 27 chr6 170633737 170634104 -11781138 - THE1B LTR MaLR 0 364 1 198 233 0 0 chr6 170635139 170635182 -11780060 - L2 LINE L2 -14 3258 3216 2150 125 20 0 chr6 170635659 170635964 -11779278 - AluSx SINE Alu -1 311 1 803 239 122 13 chr6 170636114 170636351 -11778891 - LTR55 LTR ERV -49 499 237 1126 225 43 84 chr6 170636351 170636758 -11778484 + MLT2B1 LTR ERVL 1 479 -41 2308 100 0 7 chr6 170636778 170637069 -11778173 + AluSx SINE Alu 2 290 -22 663 96 77 8 chr6 170637069 170637332 -11777910 + (TA)n Simple_repeat Simple_repeat 1 281 0 558 111 58 12 chr6 170637343 170637514 -11777728 + (TA)n Simple_repeat Simple_repeat 2 180 0 642 100 81 2 chr6 170637550 170638069 -11777173 + (TA)n Simple_repeat Simple_repeat 1 559 0 5691 129 55 2 chr6 170638080 170638979 -11776263 + Tigger3b DNA MER2_type 1 946 -285 351 159 232 0 chr6 170639001 170639070 -11776172 + Tigger3b DNA MER2_type 1157 1241 0 1075 178 27 9 chr6 170639164 170639383 -11775859 - LTR55 LTR ERV -324 224 2 371 243 166 6 chr6 170639875 170640044 -11775198 - L1ME4a LINE L1 -189 5932 5737 3885 167 30 11 chr6 170640429 170641152 -11774090 + L1MB3 LINE L1 5432 6168 -15 22 0 0 0 chr6 170641159 170641181 -11774061 + AT_rich Low_complexity Low_complexity 1 22 0 237 272 165 10 chr6 170641276 170641379 -11773863 + L2 LINE L2 3153 3271 -1 940 195 146 68 chr6 170641427 170641970 -11773272 + LTR50 LTR ERVL 1 676 -119 668 326 12 4 chr6 170643503 170643748 -11771494 + MIR SINE MIR 15 261 -1 292 269 64 0 chr6 170643898 170643976 -11771266 - MIR SINE MIR -62 146 64 223 241 63 13 chr6 170644894 170644973 -11770269 + MIR SINE MIR 60 142 -66 337 326 34 20 chr6 170644993 170645140 -11770102 + MLT1K LTR MaLR 2 150 -438 2159 234 43 24 chr6 170645258 170645840 -11769402 - MLT1E LTR MaLR 0 593 1 389 177 6 9 chr6 170646776 170646870 -11768372 - L1MC3 LINE L1 -6 7985 7710 2066 221 121 31 chr6 170647501 170647722 -11767520 + L1MC3 LINE L1 4751 4951 -1195 1758 161 17 17 chr6 170647722 170648013 -11767229 + AluJb SINE Alu 5 295 -17 2066 221 121 31 chr6 170648013 170649051 -11766191 + L1MC3 LINE L1 4951 5403 -743 905 233 80 82 chr6 170648668 170649105 -11766137 + L1MB8 LINE L1 5743 6178 0 * 812 167 0 0 chr6 170649969 170650095 -11765147 + FLAM_C SINE Alu 6 131 -12 2211 113 0 0 chr6 170650230 170650543 -11764699 + AluSx SINE Alu 4 312 0 288 244 128 0 chr6 170650551 170650637 -11764605 + MIR SINE MIR 163 259 -3 186 241 103 0 chr6 170651657 170651715 -11763527 - L2 LINE L2 -4 3309 3246 680 296 25 5 chr6 170652781 170652984 -11762258 - LTR16A LTR ERVL 0 450 244 720 234 24 53 chr6 170652995 170653204 -11762038 - MER63A DNA MER1_type -2 208 6 319 348 28 34 chr6 170653220 170653445 -11761797 - LTR16A LTR ERVL -227 230 1 1718 214 93 3 chr6 170653558 170653914 -11761328 + MSTD LTR MaLR 1 388 -8 5251 221 52 41 chr6 170653923 170655232 -11760010 + MSTD-int LTR MaLR 2 1324 -411 1054 167 9 81 chr6 170655232 170655442 -11759800 + MSTD LTR MaLR 202 396 0 365 315 20 64 chr6 170655477 170655728 -11759514 - ERVL LTR ERVL -426 5338 5099 1436 184 58 75 chr6 170657764 170658215 -11757027 + LTR23-int LTR ERV1 274 716 -4407 852 144 0 0 chr6 170658457 170658575 -11756667 + FLAM_C SINE Alu 1 118 -15 643 117 42 25 chr6 170658794 170658914 -11756328 + LTR49 LTR ERV1 474 595 0 1548 153 24 16 chr6 170658916 170659170 -11756072 + LTR49-int LTR ERV1 1 256 -6075 2251 173 94 30 chr6 170659173 170659262 -11755980 + LTR49-int LTR ERV1 886 968 -5363 267 31 0 0 chr6 170659262 170659294 -11755948 + (TA)n Simple_repeat Simple_repeat 2 33 0 2251 173 94 30 chr6 170659294 170659344 -11755898 + LTR49-int LTR ERV1 968 1013 -5318 2182 117 0 7 chr6 170659344 170659643 -11755599 - AluSx SINE Alu -15 297 1 2251 173 94 30 chr6 170659643 170659969 -11755273 + LTR49-int LTR ERV1 1013 1382 -4949 1499 146 20 54 chr6 170660085 170660335 -11754907 + LTR49-int LTR ERV1 1374 1614 -4717 1643 176 17 0 chr6 170660335 170660636 -11754606 + AluJo SINE Alu 1 306 -6 1499 146 20 54 chr6 170660636 170660679 -11754563 + LTR49-int LTR ERV1 1614 1657 -4674 1465 187 29 15 chr6 170660677 170660950 -11754292 + LTR49-int LTR ERV1 1880 2156 -4175 * 485 158 16 9 chr6 170660950 170661058 -11754184 + LTR24B LTR ERV1 357 569 -7 479 174 130 26 chr6 170663506 170663621 -11751621 - Charlie1 DNA MER1_type -4 2757 2631 * 816 273 36 0 chr6 170663616 170663836 -11751406 - Charlie1 DNA MER1_type -2522 239 12 1104 183 5 0 chr6 170663861 170664063 -11751179 + AluJo SINE Alu 85 287 -25 22 0 0 0 chr6 170664076 170664098 -11751144 + AT_rich Low_complexity Low_complexity 1 22 0 184 246 18 70 chr6 170664100 170664157 -11751085 - L2 LINE L2 -14 3258 3205 235 340 30 40 chr6 170664418 170664518 -11750724 + MIR SINE MIR 20 118 -90 437 329 51 0 chr6 170664790 170664927 -11750315 + MIR SINE MIR 47 190 -72 959 163 14 8 chr6 170665443 170665799 -11749443 + GA-rich Low_complexity Low_complexity 1 358 0 278 257 40 10 chr6 170666205 170666306 -11748936 - MLT1L LTR MaLR -4 611 508 367 246 57 25 chr6 170666457 170666579 -11748663 - MLT1L LTR MaLR -348 267 142 1065 227 19 0 chr6 170666642 170666858 -11748384 + MER58A DNA MER1_type 1 220 -4 225 279 111 5 chr6 170666866 170666980 -11748262 - MIR SINE MIR -73 135 5 2114 108 20 0 chr6 170667279 170667584 -11747658 - AluSx SINE Alu -1 311 1 1298 176 12 46 chr6 170667808 170668266 -11746976 + MLT1F LTR MaLR 1 566 -1 248 213 0 0 chr6 170668481 170668528 -11746714 - MIR SINE MIR 0 262 216 200 181 385 48 chr6 170668783 170668866 -11746376 - L2 LINE L2 -1 3312 3202 199 140 193 0 chr6 170668910 170668967 -11746275 + L2 LINE L2 2442 2509 -805 1730 165 134 36 chr6 170669063 170669481 -11745761 - MLT1C LTR MaLR -8 459 1 235 267 132 87 chr6 170669481 170669747 -11745495 + L2 LINE L2 2606 2883 -431 344 311 85 63 chr6 170669813 170670083 -11745159 + L2 LINE L2 2941 3216 -56 1794 178 95 9 chr6 170670118 170670466 -11744776 - MSTD LTR MaLR 0 396 19 1335 264 95 63 chr6 170671120 170671688 -11743554 + MLT1G1 LTR MaLR 1 586 -9 230 224 0 0 chr6 170672060 170672109 -11743133 - MLT1L LTR MaLR 0 615 567 234 211 200 42 chr6 170672123 170672218 -11743024 - LTR41 LTR ERVL -7 766 657 510 239 56 14 chr6 170672423 170672565 -11742677 - LTR41 LTR ERVL -618 155 8 291 281 35 26 chr6 170672770 170672884 -11742358 - MLT1L LTR MaLR -299 316 202 607 297 22 11 chr6 170673275 170673457 -11741785 + MIR SINE MIR 17 200 -62 209 303 197 0 chr6 170673621 170673697 -11741545 + L2 LINE L2 3150 3240 -32 244 256 12 73 chr6 170673743 170673825 -11741417 + L2 LINE L2 2908 2984 -329 648 231 119 22 chr6 170673883 170674152 -11741090 - L1MC4 LINE L1 0 8042 7748 2143 165 80 16 chr6 170674578 170675015 -11740227 - MLT1C LTR MaLR -2 465 1 1129 143 249 15 chr6 170675120 170675393 -11739849 + MER1B DNA MER1_type 1 337 0 352 265 55 29 chr6 170675420 170675576 -11739666 - L1MC4 LINE L1 -191 7594 7451 242 231 19 0 chr6 170675603 170675655 -11739587 - MER5A DNA MER1_type -3 186 134 263 211 19 0 chr6 170675661 170675713 -11739529 - MER5A DNA MER1_type -3 186 134 749 254 23 11 chr6 170675725 170675902 -11739340 - MER5A DNA MER1_type -10 179 1 1067 224 9 5 chr6 170675910 170676124 -11739118 - MER58A DNA MER1_type 0 224 10 1189 241 50 35 chr6 170676374 170676777 -11738465 + LTR37A LTR ERV1 18 426 0 592 308 31 8 chr6 170676778 170677038 -11738204 - L1MC4 LINE L1 -605 7437 7172 2272 83 0 0 chr6 170677047 170677349 -11737893 - AluY SINE Alu -9 302 1 806 251 69 28 chr6 170677438 170677685 -11737557 + MIR SINE MIR 6 262 0 453 263 190 0 chr6 170677703 170677882 -11737360 + MIR SINE MIR 49 261 -1 22 56 0 0 chr6 170678567 170678603 -11736639 + GC_rich Low_complexity Low_complexity 1 36 0 40 79 0 0 chr6 170678768 170678857 -11736385 + GC_rich Low_complexity Low_complexity 1 89 0 24 0 0 0 chr6 170679491 170679515 -11735727 + AT_rich Low_complexity Low_complexity 1 24 0 1587 168 10 13 chr6 170680351 170680661 -11734581 + AluJb SINE Alu 3 311 -1 1397 199 0 31 chr6 170681212 170681503 -11733739 - AluJo SINE Alu -24 288 7 794 198 70 137 chr6 170683600 170684127 -11731115 - L1ME LINE L1 -559 5605 5103 1015 161 22 81 chr6 170684138 170684361 -11730881 - MER20 DNA MER1_type -9 210 1 411 211 0 35 chr6 170684361 170684475 -11730767 - L1ME LINE L1 -1064 5082 4973 2752 164 96 10 chr6 170684476 170684987 -11730255 - MER21A LTR ERV1 0 931 377 1028 168 101 25 chr6 170684993 170685231 -11730011 - MER21A LTR ERV1 -667 264 9 451 127 57 13 chr6 170685231 170685388 -11729854 + (TA)n Simple_repeat Simple_repeat 1 164 0 305 279 82 69 chr6 170685426 170686046 -11729196 - L1ME LINE L1 -2373 3773 3146 218 176 137 0 chr6 170687141 170687192 -11728050 + MIR3 SINE MIR 99 156 -52 214 309 93 0 chr6 170687258 170687355 -11727887 + MIR SINE MIR 47 152 -110 320 278 108 31 chr6 170689247 170689441 -11725801 - L2 LINE L2 -377 2937 2729 1988 59 48 7 chr6 170689463 170689792 -11725450 + AluY SINE Alu 1 340 0 192 330 10 20 chr6 170689914 170690014 -11725228 + MIR SINE MIR 23 121 -141 447 201 0 0 chr6 170690795 170690929 -11724313 + (TG)n Simple_repeat Simple_repeat 2 135 0 2333 180 77 59 chr6 170693746 170694307 -11720935 + MER7C DNA MER2_type 22 592 -10 1300 132 174 8 chr6 170694320 170694578 -11720664 + MER44D DNA MER2_type 5 575 -34 196 281 156 21 chr6 170694860 170694956 -11720286 + MIR SINE MIR 15 123 -139 1997 111 0 26 chr6 170695785 170695955 -11719287 - AluSx SINE Alu -13 299 139 261 0 0 0 chr6 170695955 170695984 -11719258 + (TG)n Simple_repeat Simple_repeat 2 30 0 1997 111 0 26 chr6 170695984 170696120 -11719122 - AluSx SINE Alu -173 139 1 2139 106 0 0 chr6 170696950 170697242 -11718000 - AluSg SINE Alu -18 292 1 2427 68 7 0 chr6 170697786 170698094 -11717148 + AluY SINE Alu 1 310 -1 481 229 107 29 chr6 170698313 170698453 -11716789 + L2 LINE L2 3163 3313 0 701 173 16 0 chr6 170699155 170699282 -11715960 - FLAM_C SINE Alu -4 129 1 2741 80 42 3 chr6 170699780 170700141 -11715101 + THE1C LTR MaLR 1 375 0 2131 120 0 0 chr6 170700179 170700480 -11714762 - AluSg SINE Alu -9 301 1 268 206 88 15 chr6 170701570 170701638 -11713604 - L2 LINE L2 -1382 1932 1860 4935 149 45 13 chr6 170701783 170702151 -11713091 - L1PB4 LINE L1 0 6858 6503 336 24 0 0 chr6 170702151 170702192 -11713050 + (CA)n Simple_repeat Simple_repeat 1 41 0 4935 149 45 13 chr6 170702192 170703409 -11711833 - L1PB4 LINE L1 -355 6503 5224 * 6048 212 32 27 chr6 170703407 170705096 -11710146 - L1PB4 LINE L1 -2411 4437 2741 1478 230 38 139 chr6 170705087 170706221 -11709021 - L1PB4 LINE L1 -4713 2135 1025 * 429 303 37 65 chr6 170706358 170706681 -11708561 - L1PB4 LINE L1 -5834 1015 702 350 354 29 15 chr6 170706731 170706938 -11708304 - L1M2b LINE L1 -5258 1951 446 455 416 49 18 chr6 170706976 170707363 -11707879 - L1PB4 LINE L1 -6443 406 8 186 133 0 0 chr6 170707823 170707853 -11707389 + (TATAG)n Simple_repeat Simple_repeat 4 33 0 483 314 92 25 chr6 170708387 170708538 -11706704 - MIR SINE MIR 0 262 88 2142 156 127 5 chr6 170708538 170708941 -11706301 - LTR47A LTR ERVL 0 452 1 483 314 92 25 chr6 170708941 170709028 -11706214 - MIR SINE MIR -174 88 8 374 222 117 82 chr6 170709592 170709708 -11705534 + L1ME LINE L1 5279 5389 -732 1982 135 125 10 chr6 170709708 170710092 -11705150 - MSTA LTR MaLR 0 428 1 374 222 117 82 chr6 170710092 170710271 -11704971 + L1ME LINE L1 5389 5580 -541 598 92 0 0 chr6 170710278 170710365 -11704877 - Alu SINE Alu -2 307 221 2329 88 13 16 chr6 170710281 170710589 -11704653 - AluSx SINE Alu -5 307 1 3653 128 2 9 chr6 170710616 170711147 -11704095 + MER1A DNA MER1_type 1 527 0 2428 167 7 37 chr6 170711429 170711661 -11703581 - Tigger2a DNA MER2_type -2274 434 220 1999 148 0 10 chr6 170711661 170711959 -11703283 + AluJb SINE Alu 1 295 -17 2428 167 7 37 chr6 170711959 170712163 -11703079 - Tigger2a DNA MER2_type -2488 220 11 29 60 0 0 chr6 170712228 170712278 -11702964 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr6 170712444 170712472 -11702770 + AT_rich Low_complexity Low_complexity 1 28 0 579 285 104 45 chr6 170713188 170713542 -11701700 - L2 LINE L2 -1 3312 2938 1668 185 99 11 chr6 170714330 170714770 -11700472 - LTR45B LTR ERV1 0 525 6 22 0 0 0 chr6 170716461 170716483 -11698759 + AT_rich Low_complexity Low_complexity 1 22 0 1026 278 85 23 chr6 170716573 170717105 -11698137 - L1ME2 LINE L1 -295 5869 5305 396 247 183 75 chr6 170717306 170717521 -11697721 - L1ME2 LINE L1 -879 5267 5076 1458 110 60 5 chr6 170717521 170717739 -11697503 + MER30 DNA MER1_type 1 230 0 396 247 183 75 chr6 170717739 170717961 -11697281 - L1ME2 LINE L1 -1070 5076 4783 259 281 103 55 chr6 170718070 170718323 -11696919 - L2 LINE L2 -513 2801 2537 952 204 4 34 chr6 170721008 170721243 -11693999 - L1MA8 LINE L1 -31 6260 6033 2157 164 71 0 chr6 170721874 170722252 -11692990 - MSTA LTR MaLR -7 421 17 1215 96 0 45 chr6 170722260 170722316 -11692926 - AluSx SINE Alu -143 169 112 267 93 0 0 chr6 170722316 170722359 -11692883 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1215 96 0 45 chr6 170722359 170722479 -11692763 - AluSx SINE Alu -200 112 1 706 224 92 11 chr6 170722796 170722970 -11692272 + MER58C DNA MER1_type 13 200 -15 2453 153 57 0 chr6 170725242 170725647 -11689595 + MSTA LTR MaLR 1 428 0 12594 236 42 14 chr6 170725853 170728851 -11686391 + L1PB4 LINE L1 926 4294 -2578 257 0 30 0 chr6 170728851 170728884 -11686358 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 12594 236 42 14 chr6 170728884 170730810 -11684432 + L1PB4 LINE L1 4294 6164 -708 3045 36 3 0 chr6 170730810 170731156 -11684086 + L1PA4 LINE L1 5793 6152 -3 4046 145 33 19 chr6 170731214 170731566 -11683676 + L1PB4 LINE L1 6144 6490 -382 252 0 0 0 chr6 170731566 170731594 -11683648 + (CA)n Simple_repeat Simple_repeat 2 29 0 4046 145 33 19 chr6 170731594 170731960 -11683282 + L1PB4 LINE L1 6490 6872 0 1044 272 116 25 chr6 170732142 170733021 -11682221 - L2 LINE L2 -12 3301 2303 456 306 104 14 chr6 170733033 170733255 -11681987 - MIR SINE MIR -3 259 18 1253 301 84 5 chr6 170733272 170733942 -11681300 - L2 LINE L2 -1023 2291 1569 22 56 0 0 chr6 170735091 170735127 -11680115 + AT_rich Low_complexity Low_complexity 1 36 0 338 333 52 0 chr6 170735977 170736112 -11679130 - L2 LINE L2 -24 3289 3148 2167 160 16 10 chr6 170737611 170737999 -11677243 - MLT1B LTR MaLR 0 390 1 25 0 0 0 chr6 170738454 170738479 -11676763 + AT_rich Low_complexity Low_complexity 1 25 0 1901 148 16 0 chr6 170738527 170738832 -11676410 - AluSx SINE Alu -2 310 1 1853 145 3 57 chr6 170740375 170740693 -11674549 - AluSx SINE Alu -11 301 1 1194 204 61 14 chr6 170740876 170741156 -11674086 - L1MB7 LINE L1 -16 6168 5876 275 190 0 35 chr6 170741292 170741350 -11673892 + L2 LINE L2 3214 3269 -3 1571 195 3 0 chr6 170742683 170742975 -11672267 - AluJb SINE Alu -6 306 14 208 281 0 12 chr6 170746073 170746155 -11669087 + L3 LINE CR1 622 702 -875 252 269 0 0 chr6 170746272 170746339 -11668903 + A-rich Low_complexity Low_complexity 1 67 0 217 338 38 0 chr6 170746368 170746448 -11668794 + MIR SINE MIR 14 96 -166 429 196 38 92 chr6 170747260 170747445 -11667797 - MLT1J2 LTR MaLR -29 421 239 406 252 31 16 chr6 170747482 170747609 -11667633 - MLT1J2 LTR MaLR -321 129 1 217 250 0 0 chr6 170748360 170748416 -11666826 + A-rich Low_complexity Low_complexity 1 56 0 469 272 107 19 chr6 170748434 170748611 -11666631 + MIR SINE MIR 2 201 -61 2262 144 3 6 chr6 170748611 170748959 -11666283 - MER7A DNA MER2_type -1 345 1 469 272 107 19 chr6 170748959 170748987 -11666255 + MIR SINE MIR 201 225 -37 1454 112 14 19 chr6 170750951 170751166 -11664076 + L1PA8A LINE L1 5909 6122 -9 227 56 56 0 chr6 170753959 170753995 -11661247 + CT-rich Low_complexity Low_complexity 3 40 0 1205 147 171 12 chr6 170754911 170755156 -11660086 - L1MB3 LINE L1 0 6183 5900 654 260 45 15 chr6 170758805 170759005 -11656237 - MER82 DNA MER2_type -1 652 447 209 301 68 19 chr6 170759239 170759342 -11655900 + MIR3 SINE MIR 78 154 -54 2292 179 61 33 chr6 170759361 170759870 -11655372 - LTR26B LTR ERV1 -7 524 2 371 256 33 0 chr6 170759892 170759982 -11655260 - MER82 DNA MER2_type -560 93 1 1046 214 115 45 chr6 170760560 170761112 -11654130 - LTR48B LTR ERV1 0 644 1 1575 155 45 31 chr6 170761228 170761518 -11653724 + AluJb SINE Alu 1 294 -18 1408 169 37 12 chr6 170761518 170761760 -11653482 + AluJo SINE Alu 39 286 -26 6787 55 4 0 chr6 170761770 170762677 -11652565 + L1PA6 LINE L1 4273 5183 -963 2316 76 20 0 chr6 170762677 170762973 -11652269 + L1PA6 LINE L1 5841 6148 -6 24 0 0 0 chr6 170762975 170762999 -11652243 + AT_rich Low_complexity Low_complexity 1 24 0 376 252 73 8 chr6 170763153 170763276 -11651966 - L1MB4 LINE L1 0 6180 6050 1341 197 3 58 chr6 170763276 170763571 -11651671 - AluJo SINE Alu -33 279 1 2923 189 32 29 chr6 170763598 170764290 -11650952 - MER72 LTR ERV1 -28 694 1 359 299 153 0 chr6 170765216 170765353 -11649889 + MIR SINE MIR 85 242 -20 390 248 221 31 chr6 170765420 170765674 -11649568 - L1ME3A LINE L1 -5 6165 5864 234 327 0 56 chr6 170765789 170765896 -11649346 + MIR SINE MIR 162 262 0 21 0 0 0 chr6 170768023 170768044 -11647198 + AT_rich Low_complexity Low_complexity 1 21 0 1185 138 202 32 chr6 170768831 170769113 -11646129 + MER44D DNA MER2_type 10 609 0 521 246 136 52 chr6 170769114 170769386 -11645856 + L2 LINE L2 2665 2959 -355 212 200 14 0 chr6 170770314 170770384 -11644858 + (TG)n Simple_repeat Simple_repeat 1 71 0 762 147 16 39 chr6 170770731 170770860 -11644382 - FLAM_A SINE Alu -7 126 1 2521 82 0 0 chr6 170771721 170772024 -11643218 - AluSg SINE Alu -7 303 1 2432 77 0 3 chr6 170772592 170772889 -11642353 - AluSc SINE Alu -13 296 1 22 0 0 0 chr6 170773224 170773246 -11641996 + AT_rich Low_complexity Low_complexity 1 22 0 271 284 25 0 chr6 170774540 170774621 -11640621 + MIR3 SINE MIR 92 174 -34 210 224 0 20 chr6 170774829 170774878 -11640364 - MER5B DNA MER1_type -58 120 73 330 26 0 0 chr6 170775329 170775368 -11639874 + (TG)n Simple_repeat Simple_repeat 2 40 0 294 29 0 0 chr6 170775367 170775402 -11639840 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 2005 94 13 72 chr6 170775402 170775565 -11639677 - AluSx SINE Alu -23 289 151 2399 77 0 7 chr6 170775565 170775862 -11639380 - AluSg SINE Alu -10 300 6 2005 94 13 72 chr6 170775862 170776005 -11639237 - AluSx SINE Alu -161 151 1 711 274 95 51 chr6 170776432 170777110 -11638132 + L2 LINE L2 2563 3263 -50 23 0 0 0 chr6 170777528 170777551 -11637691 + AT_rich Low_complexity Low_complexity 1 23 0 387 0 0 0 chr6 170777618 170777661 -11637581 + (TG)n Simple_repeat Simple_repeat 1 43 0 552 157 113 43 chr6 170784011 170784126 -11631116 - FLAM_C SINE Alu -20 123 1 221 194 0 16 chr6 170784650 170784712 -11630530 + (CA)n Simple_repeat Simple_repeat 2 62 0 360 266 25 0 chr6 170784808 170784887 -11630355 - L2 LINE L2 -1 3312 3232 511 194 10 0 chr6 170786289 170786392 -11628850 + MER46C DNA MER2_type 101 204 -134 2492 58 0 29 chr6 170790388 170790698 -11624544 + AluY SINE Alu 1 301 -10 3820 167 47 42 chr6 170790722 170791701 -11623541 - MER11C LTR ERVK 0 1071 1 2252 94 7 7 chr6 170791865 170792162 -11623080 - AluSq SINE Alu -16 297 1 3694 208 20 81 chr6 170792463 170793494 -11621748 - LTR5 LTR ERVK 0 969 1 186 366 65 0 chr6 170796973 170797066 -11618176 - MIR SINE MIR -117 145 47 2285 104 0 22 chr6 170797209 170797526 -11617716 - AluSq SINE Alu 0 313 4 21 0 0 0 chr6 170798328 170798349 -11616893 + AT_rich Low_complexity Low_complexity 1 21 0 192 246 72 14 chr6 170801519 170801588 -11613654 + L2 LINE L2 2929 3001 -271 858 278 70 10 chr6 170802508 170802810 -11612432 - MER77 LTR ERV1 -7 598 279 2674 47 0 0 chr6 170804169 170804469 -11610773 + AluY SINE Alu 1 300 -11 2112 148 3 0 chr6 170806871 170807182 -11608060 - AluSx SINE Alu 0 312 1 2259 113 0 0 chr6 170808089 170808382 -11606860 + AluSx SINE Alu 1 293 -19 367 191 262 0 chr6 170808428 170808554 -11606688 - HAL1 LINE L1 -122 2385 2227 267 318 78 0 chr6 170808592 170808746 -11606496 + HAL1 LINE L1 1291 1456 -1051 908 213 51 0 chr6 170808793 170808868 -11606374 - MER6B DNA MER2_type -658 207 137 2426 56 7 23 chr6 170808868 170808884 -11606358 - AluY SINE Alu -13 298 283 441 0 0 0 chr6 170808884 170808933 -11606309 + (TTATG)n Simple_repeat Simple_repeat 2 50 0 2426 56 7 23 chr6 170808933 170809219 -11606023 - AluY SINE Alu -28 283 1 908 213 51 0 chr6 170809219 170809340 -11605902 - MER6B DNA MER2_type -728 137 1 663 278 83 21 chr6 170809537 170810058 -11605184 + L1MEc LINE L1 2061 2572 -3643 487 0 0 0 chr6 170810277 170810331 -11604911 + (T)n Simple_repeat Simple_repeat 1 180 0 2405 105 0 3 chr6 170810331 170810644 -11604598 - AluSx SINE Alu 0 312 1 351 226 62 27 chr6 170810683 170810829 -11604413 + L1MEc LINE L1 2866 3016 -3199 215 216 0 0 chr6 170812576 170812613 -11602629 - L2 LINE L2 -20 3252 3216 551 98 12 0 chr6 170812805 170812887 -11602355 + AluSg/x SINE Alu 215 297 -15 342 321 18 86 chr6 170813572 170813793 -11601449 - L1ME LINE L1 -353 5768 5563 348 43 0 0 chr6 170815450 170815496 -11599746 + (TG)n Simple_repeat Simple_repeat 1 46 0 2355 103 0 0 chr6 170818148 170818533 -11596709 - AluSc SINE Alu 0 385 1 347 324 199 0 chr6 170819015 170819296 -11595946 - L1MC4 LINE L1 -141 7901 7565 321 219 55 0 chr6 170819561 170819634 -11595608 + MER103 DNA DNA 11 87 -79 4557 155 43 13 chr6 170819867 170820736 -11594506 + L1MA9 LINE L1 5374 6268 -44 406 145 0 0 chr6 170820736 170820798 -11594444 - MER8 DNA MER2_type 0 239 178 * 2081 139 99 15 chr6 170820797 170821201 -11594041 + Tigger2 DNA MER2_type 2273 2710 -8 3610 158 39 24 chr6 170821367 170822090 -11593152 - MER49 LTR ERV1 -10 913 180 1789 145 119 0 chr6 170822232 170822576 -11592666 + MLT1B LTR MaLR 1 385 -5 1228 243 112 65 chr6 170822712 170823248 -11591994 + MER34B LTR ERV1 5 565 0 1586 87 4 4 chr6 170823299 170823528 -11591714 - pTR5 LTR ERV1 -2038 400 172 354 250 10 0 chr6 170823531 170823627 -11591615 - LTR30 LTR ERV1 -80 642 546 4477 128 74 74 chr6 170823627 170824619 -11590623 - pTR5 LTR ERV1 -411 2027 741 952 148 19 0 chr6 170824863 170825025 -11590217 - MLT1C LTR MaLR 0 467 303 182 254 14 84 chr6 170825641 170825712 -11589530 + MIR SINE MIR 85 150 -58 963 293 148 19 chr6 170826891 170827352 -11587890 - MLT1E LTR MaLR -8 585 66 6025 129 40 54 chr6 170827514 170828645 -11586597 - MER52C LTR ERV1 0 1278 164 1241 164 13 1 chr6 170828674 170828881 -11586361 - MER41-int LTR ERV1 -1 7090 669 345 78 39 0 chr6 170828879 170828930 -11586312 - MER41-int LTR ERV1 -1177 6028 5976 * 2020 179 98 17 chr6 170828928 170829505 -11585737 - MER41-int LTR ERV1 -1670 5748 2357 407 174 264 0 chr6 170829500 170829621 -11585621 - MER41-int LTR ERV1 -2865 4672 4520 * 446 171 2 33 chr6 170829600 170829706 -11585536 - MER41-int LTR ERV1 -3955 1991 1544 742 145 46 46 chr6 170829710 170829862 -11585380 - MER41-int LTR ERV1 -4805 1141 990 3831 143 90 10 chr6 170829874 170830878 -11584364 - MER41-int LTR ERV1 -2984 2233 1224 755 174 7 0 chr6 170830878 170831022 -11584220 + L1PB1 LINE L1 6006 6150 -1 479 266 58 0 chr6 170832334 170832473 -11582769 + MIR SINE MIR 29 175 -87 252 191 174 78 chr6 170833772 170833887 -11581355 + MER53 DNA DNA 1 126 -63 449 135 10 10 chr6 170833902 170833998 -11581244 + MER53 DNA DNA 94 189 0 * 494 154 0 0 chr6 170833914 170834005 -11581237 - MER53 DNA DNA -96 93 3 198 179 0 0 chr6 170836835 170836874 -11578368 + MER5B DNA MER1_type 2 40 -138 1732 183 3 3 chr6 170837978 170838267 -11576975 - AluJo SINE Alu -17 295 7 227 285 11 26 chr6 170838399 170838520 -11576722 - MIR SINE MIR -50 212 95 1900 136 62 14 chr6 170839040 170839392 -11575850 - Tigger2 DNA MER2_type -77 2641 2273 405 174 0 0 chr6 170839382 170839451 -11575791 - Tigger2 DNA MER2_type -2649 69 1 * 318 248 61 105 chr6 170839996 170840339 -11574903 - L2 LINE L2 -830 2484 2157 415 312 42 30 chr6 170842818 170843055 -11572187 + L2 LINE L2 3073 3312 -1 218 222 30 15 chr6 170844639 170844718 -11570524 + CT-rich Low_complexity Low_complexity 1 137 0 257 164 0 55 chr6 170846920 170846975 -11568267 + L2 LINE L2 3262 3313 0 218 333 52 0 chr6 170847255 170847351 -11567891 + L2 LINE L2 2461 2561 -753 501 281 86 0 chr6 170847445 170847655 -11567587 + L2 LINE L2 2594 2821 -493 571 263 25 30 chr6 170847711 170847909 -11567333 + MIR SINE MIR 66 262 0 649 228 30 12 chr6 170848642 170848809 -11566433 - MIR SINE MIR -19 243 74 1993 102 71 17 chr6 170849567 170849888 -11565354 + AluSx SINE Alu 1 312 0 2022 270 70 18 chr6 170849888 170850143 -11565099 - L1ME3 LINE L1 -3 6159 5919 2062 150 0 0 chr6 170850143 170850437 -11564805 - AluJo SINE Alu -6 306 13 2022 270 70 18 chr6 170850437 170850854 -11564388 - L1ME3 LINE L1 -243 5919 5452 376 226 36 66 chr6 170851492 170851629 -11563613 - L2 LINE L2 -2 3311 3179 343 291 45 0 chr6 170851851 170851985 -11563257 - L2 LINE L2 -533 2781 2642 190 219 0 0 chr6 170852665 170852706 -11562536 - L2 LINE L2 -17 3296 3256 266 298 83 0 chr6 170852766 170852850 -11562392 - MIR SINE MIR -53 209 119 254 298 36 0 chr6 170852923 170853007 -11562235 + MIR3 SINE MIR 108 194 -14 282 330 0 34 chr6 170853479 170853597 -11561645 + MIR SINE MIR 17 130 -78 298 300 5 7 chr6 170853668 170853805 -11561437 - MIR SINE MIR -62 146 20 5104 153 29 7 chr6 170853848 170854892 -11560350 - L1MB2 LINE L1 -7 6164 5102 2531 226 75 42 chr6 170854920 170854986 -11560256 - L1ME1 LINE L1 -5 6161 6099 216 67 0 0 chr6 170854986 170855016 -11560226 + (CA)n Simple_repeat Simple_repeat 2 31 0 2531 226 75 42 chr6 170855016 170855612 -11559630 - L1ME1 LINE L1 -67 6099 5468 2319 108 0 3 chr6 170855612 170855909 -11559333 - AluSq SINE Alu -17 296 1 2531 226 75 42 chr6 170855909 170856023 -11559219 - L1ME1 LINE L1 -698 5468 5359 22 35 0 0 chr6 170857150 170857179 -11558063 + AT_rich Low_complexity Low_complexity 1 29 0 2118 129 20 0 chr6 170858195 170858497 -11556745 + AluSx SINE Alu 3 310 -2 21 36 0 0 chr6 170858568 170858596 -11556646 + AT_rich Low_complexity Low_complexity 1 28 0 411 312 110 41 chr6 170858620 170858887 -11556355 + HAL1b LINE L1 205 513 -835 1726 131 116 0 chr6 170858887 170859155 -11556087 - AluSq SINE Alu -11 302 4 411 312 110 41 chr6 170859155 170859304 -11555938 + HAL1b LINE L1 513 650 -698 362 301 61 31 chr6 170859583 170859746 -11555496 + HAL1b LINE L1 766 933 -415 516 262 75 50 chr6 170860207 170860630 -11554612 + L1M4 LINE L1 3530 3962 -2184 4940 232 106 24 chr6 170860763 170861465 -11553777 + L1MEc LINE L1 667 1310 -5086 1502 149 0 0 chr6 170861465 170861693 -11553549 + AluJb SINE Alu 82 309 -3 4940 232 106 24 chr6 170861693 170862110 -11553132 + L1MEc LINE L1 1310 1691 -4705 624 213 230 17 chr6 170862110 170862196 -11553046 - MER58C DNA MER1_type -2205 215 149 2119 84 0 57 chr6 170862196 170862568 -11552674 - AluY SINE Alu 0 355 1 624 213 230 17 chr6 170862568 170862654 -11552588 - MER58C DNA MER1_type -2271 149 5 4940 232 106 24 chr6 170862654 170863237 -11552005 + L1MEc LINE L1 1691 2511 -3885 310 346 0 19 chr6 170865083 170865187 -11550055 + G-rich Low_complexity Low_complexity 6 107 0 396 296 42 74 chr6 170866219 170866435 -11548807 + MIR SINE MIR 40 248 -14 271 354 50 39 chr6 170866478 170866659 -11548583 - MER5A DNA MER1_type 0 189 7 2254 100 3 0 chr6 170866814 170867113 -11548129 - AluSp SINE Alu -13 300 1 217 282 78 29 chr6 170867423 170867526 -11547716 - MIR SINE MIR -30 232 125 1416 222 42 3 chr6 170867608 170867914 -11547328 - MER58B DNA MER1_type -14 327 10 2077 153 26 32 chr6 170868599 170868670 -11546572 - MER2 DNA MER2_type 0 344 274 1869 161 7 3 chr6 170868670 170868975 -11546267 + AluJo SINE Alu 1 306 -6 2077 153 26 32 chr6 170868975 170869249 -11545993 - MER2 DNA MER2_type -70 274 1 703 296 88 4 chr6 170872267 170872507 -11542735 - MIR SINE MIR 0 262 3 2168 114 7 7 chr6 170872642 170872940 -11542302 - AluSq SINE Alu -15 298 1 1551 179 149 12 chr6 170873704 170874039 -11541203 - LTR64 LTR ERVK 0 558 178 6974 24 0 1 chr6 170874052 170874853 -11540389 - L1PA4 LINE L1 -3 6152 5353 6114 36 1 0 chr6 170874852 170875583 -11539659 + L1PA4 LINE L1 4604 5335 -811 * 1455 163 7 48 chr6 170875583 170875913 -11539329 - AluJb SINE Alu 0 318 1 939 144 11 53 chr6 170875915 170876103 -11539139 - LTR64 LTR ERVK -367 191 12 247 253 121 132 chr6 170876365 170876728 -11538514 - MLT1J LTR MaLR 0 511 153 2637 124 6 6 chr6 170877008 170877372 -11537870 + THE1B LTR MaLR 1 364 0 236 248 212 0 chr6 170877771 170877884 -11537358 - L1MC/D LINE L1 -1910 5898 5762 421 257 43 0 chr6 170878373 170878686 -11536556 + (TA)n Simple_repeat Simple_repeat 1 326 0 486 280 31 7 chr6 170878718 170879116 -11536126 + (TATG)n Simple_repeat Simple_repeat 1 407 0 251 221 44 0 chr6 170879128 170879286 -11535956 + (TA)n Simple_repeat Simple_repeat 2 166 0 484 241 23 100 chr6 170880585 170880805 -11534437 - L2 LINE L2 -5 3308 3106 1513 163 6 97 chr6 170881643 170881974 -11533268 - AluJo SINE Alu -11 301 1 2136 117 0 0 chr6 170883056 170883370 -11531872 + AluSx SINE Alu 1 314 0 5028 88 10 31 chr6 170883870 170884551 -11530691 - PABL_B LTR ERV1 0 667 1 504 278 11 28 chr6 170885382 170885562 -11529680 - L2 LINE L2 -4 3309 3133 896 118 96 0 chr6 170887102 170887282 -11527960 - AluSg/x SINE Alu 0 329 137 304 250 76 28 chr6 170887648 170887792 -11527450 + L1MB3 LINE L1 5298 5448 -673 188 111 28 0 chr6 170887792 170887828 -11527414 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 574 112 9 9 chr6 170887827 170887934 -11527308 + (GA)n Simple_repeat Simple_repeat 1 107 0 2158 144 21 45 chr6 170888736 170889110 -11526132 - MLT1A1 LTR MaLR 0 365 1 4181 135 13 24 chr6 170889660 170890332 -11524910 + L1MB3 LINE L1 5517 6181 -2 281 378 10 0 chr6 170890435 170890533 -11524709 + L2 LINE L2 2979 3077 -195 304 305 92 46 chr6 170890645 170890776 -11524466 + L2 LINE L2 3172 3308 -5 2271 74 3 7 chr6 170891175 170891490 -11523752 - AluY SINE Alu 0 314 1 2378 84 0 0 chr6 170891823 170892122 -11523120 - AluY SINE Alu -12 299 1 1262 65 0 0 chr6 170892708 170892863 -11522379 - L1PA4 LINE L1 -4236 1910 1756 * 29017 36 3 1 chr6 170892859 170897093 -11518149 + L1PA4 LINE L1 1917 6155 0 488 247 60 106 chr6 170897336 170897818 -11517424 + L1ME1 LINE L1 3077 3536 -2610 2627 49 29 35 chr6 170897894 170898239 -11517003 - L1PA4 LINE L1 -3 6152 5810 452 229 19 9 chr6 170898286 170898391 -11516851 - LTR16B LTR ERVL 0 464 359 312 316 43 0 chr6 170898492 170898631 -11516611 - LTR16B LTR ERVL -278 186 42 973 302 130 39 chr6 170898686 170900059 -11515183 + L1ME1 LINE L1 3685 5250 -896 1959 129 7 20 chr6 170900079 170900381 -11514861 - AluSx SINE Alu -14 298 1 15273 196 32 42 chr6 170900381 170904842 -11510400 + L1MA5A LINE L1 14 4518 -2421 2042 156 0 6 chr6 170904842 170905156 -11510086 - AluSx SINE Alu 0 312 1 15273 196 32 42 chr6 170905156 170906655 -11508587 + L1MA5A LINE L1 4518 6151 -788 2020 99 58 10 chr6 170906655 170906947 -11508295 - AluSc SINE Alu -3 306 1 15273 196 32 42 chr6 170906947 170907725 -11507517 + L1MA5A LINE L1 6151 6935 -4 1031 284 35 52 chr6 170907718 170908236 -11507006 + L1ME1 LINE L1 5271 5779 -391 * 247 241 190 25 chr6 170908454 170908612 -11506630 + LTR16C LTR ERVL 257 440 -51 900 239 79 59 chr6 170908691 170909046 -11506196 + L1ME1 LINE L1 5800 6161 -5 227 205 98 62 chr6 170909296 170909408 -11505834 - L1ME4a LINE L1 -17 6104 5989 2870 125 29 2 chr6 170909473 170909888 -11505354 - MSTA LTR MaLR -2 426 1 197 368 56 50 chr6 170910271 170910649 -11504593 + L2 LINE L2 2851 3230 -42 1092 177 8 76 chr6 170913087 170913324 -11501918 - MER58A DNA MER1_type -2 222 2 189 0 0 0 chr6 170913509 170913530 -11501712 + (T)n Simple_repeat Simple_repeat 1 21 0 564 236 24 0 chr6 170913566 170913693 -11501549 - L1MD2 LINE L1 -17 6342 6213 13839 59 2 2 chr6 170913794 170915569 -11499673 + L1P LINE L1 2769 4542 -1604 9168 81 2 3 chr6 170915683 170916928 -11498314 - L1P LINE L1 -3606 2540 1297 267 276 0 0 chr6 170917028 170917126 -11498116 + (TTG)n Simple_repeat Simple_repeat 2 99 0 615 229 0 0 chr6 170917134 170917304 -11497938 + (CTG)n Simple_repeat Simple_repeat 1 170 0 531 268 0 0 chr6 170917350 170917529 -11497713 + (CTG)n Simple_repeat Simple_repeat 1 179 0 322 280 9 9 chr6 170917529 170917636 -11497606 + (TTG)n Simple_repeat Simple_repeat 2 108 0 537 234 0 4 chr6 170917638 170917886 -11497356 + (CTG)n Simple_repeat Simple_repeat 1 246 0 515 253 0 16 chr6 170917928 170918110 -11497132 + (CTG)n Simple_repeat Simple_repeat 2 180 0 242 229 0 0 chr6 170918111 170918159 -11497083 + (TTG)n Simple_repeat Simple_repeat 1 48 0 219 146 0 0 chr6 170919090 170919131 -11496111 + (CAA)n Simple_repeat Simple_repeat 1 41 0 555 257 0 0 chr6 170919180 170919351 -11495891 + (CAG)n Simple_repeat Simple_repeat 1 171 0 522 261 0 0 chr6 170919414 170919590 -11495652 + (CAG)n Simple_repeat Simple_repeat 1 176 0 537 216 0 0 chr6 170919643 170919782 -11495460 + (CAG)n Simple_repeat Simple_repeat 2 140 0 765 212 0 0 chr6 170919801 170919980 -11495262 + (CAG)n Simple_repeat Simple_repeat 1 179 0 525 244 0 0 chr6 170920000 170920160 -11495082 + (CAG)n Simple_repeat Simple_repeat 2 161 0 789 208 0 0 chr6 170920171 170920349 -11494893 + (CAG)n Simple_repeat Simple_repeat 2 179 0 762 229 0 0 chr6 170920377 170920670 -11494572 + (CAG)n Simple_repeat Simple_repeat 1 293 0 746 217 0 4 chr6 170920696 170920969 -11494273 + (CAG)n Simple_repeat Simple_repeat 1 271 0 1723 260 105 26 chr6 170921076 170921818 -11493424 - HAL1 LINE L1 -34 2473 1673 270 239 65 22 chr6 170921871 170921963 -11493279 + LTR33A LTR ERVL 64 159 -364 2299 138 33 25 chr6 170922128 170922489 -11492753 + THE1B LTR MaLR 1 364 0 2619 72 3 39 chr6 170922504 170922863 -11492379 - MER4E LTR ERV1 0 766 421 7033 158 19 30 chr6 170922870 170924119 -11491123 + L1P LINE L1 11 1245 -4901 2869 119 0 16 chr6 170924222 170924668 -11490574 + HERVH LTR ERV1 2392 2830 -4883 5292 121 37 72 chr6 170924668 170925636 -11489606 + HERVH LTR ERV1 3357 4290 -3423 * 5731 91 11 5 chr6 170925634 170926425 -11488817 + HERVH LTR ERV1 4221 5016 -2697 2644 106 43 24 chr6 170926428 170926851 -11488391 + HERVH LTR ERV1 7283 7713 0 2087 100 21 9 chr6 170926851 170927248 -11487994 + LTR7 LTR ERV1 1 448 -2 1342 106 46 138 chr6 170927249 170927532 -11487710 + MER41-int LTR ERV1 434 690 -5256 2302 141 39 6 chr6 170927533 170927888 -11487354 + MER41-int LTR ERV1 2005 2371 -5166 550 115 81 0 chr6 170927885 170927972 -11487270 + MER41-int LTR ERV1 1898 1991 -3955 * 4174 134 104 6 chr6 170927980 170928690 -11486552 + MER41-int LTR ERV1 2167 2946 -3000 2874 93 45 5 chr6 170928677 170929117 -11486125 + MER41-int LTR ERV1 3300 3757 -2189 * 1529 176 90 6 chr6 170929321 170929633 -11485609 - L1MD2 LINE L1 -457 5902 5565 797 287 82 20 chr6 170929848 170930393 -11484849 - L1ME2 LINE L1 -332 5789 5254 2452 88 0 0 chr6 170930625 170930931 -11484311 - AluY SINE Alu -5 306 1 499 299 79 50 chr6 170930992 170931333 -11483909 - ERVL LTR ERVL -4616 1148 798 2413 137 28 8 chr6 170931405 170931762 -11483480 - THE1B LTR MaLR 0 364 1 10786 101 14 38 chr6 170931762 170933363 -11481879 - THE1B-int LTR MaLR 0 1580 19 2626 126 78 5 chr6 170933369 170933790 -11481452 + MER4E LTR ERV1 1 452 -327 7574 49 11 2 chr6 170933791 170935339 -11479903 - L1PA6 LINE L1 -1 6153 4598 363 212 0 0 chr6 170935470 170935555 -11479687 + (CAA)n Simple_repeat Simple_repeat 2 86 0 537 282 22 61 chr6 170935659 170935840 -11479402 + MIR SINE MIR 25 198 -64 15249 135 25 7 chr6 170935840 170938208 -11477034 - Tigger1 DNA MER2_type 0 2418 8 209 226 57 0 chr6 170938258 170938311 -11476931 - MIR SINE MIR -107 155 100 329 244 185 0 chr6 170938435 170938570 -11476672 - MIR SINE MIR -89 173 14 354 277 0 40 chr6 170938648 170938749 -11476493 - L2 LINE L2 -3 3269 3173 194 188 29 116 chr6 170938803 170938825 -11476417 + MIR3 SINE MIR 143 165 -43 622 255 124 59 chr6 170938825 170939131 -11476111 - MER102a DNA MER1_type -4 326 1 194 188 29 116 chr6 170939131 170939177 -11476065 + MIR3 SINE MIR 165 205 -3 1364 270 147 36 chr6 170939364 170939870 -11475372 - L1MC4a LINE L1 -744 5402 5476 2126 112 0 22 chr6 170939870 170940183 -11475059 - AluSg SINE Alu -4 306 1 1364 270 147 36 chr6 170940183 170940831 -11474411 - L1MC4a LINE L1 -669 5477 4903 252 297 55 31 chr6 170941685 170941813 -11473429 + MIR SINE MIR 21 151 -111 2405 136 17 25 chr6 170941816 170941945 -11473297 + MER57A LTR ERV1 1 129 -274 5076 99 33 0 chr6 170941945 170942614 -11472628 + LTR8 LTR ERV1 1 691 0 2405 136 17 25 chr6 170942614 170942890 -11472352 + MER57A LTR ERV1 129 403 0 4459 158 54 65 chr6 170942905 170943818 -11471424 + MER4D LTR ERV1 1 903 0 3937 122 13 4 chr6 170943818 170944367 -11470875 + MER41A LTR ERV1 1 554 0 2848 135 16 16 chr6 170944367 170944798 -11470444 + MER41A-int LTR ERV1 1 431 -5515 2148 90 17 9 chr6 170944806 170945199 -11470043 + LTR7 LTR ERV1 1 442 -8 10000 127 22 40 chr6 170945207 170947365 -11467877 + HERVH LTR ERV1 1 2307 -5406 12940 87 24 18 chr6 170947470 170949313 -11465929 + MER41A-int LTR ERV1 4092 5945 -1 4312 98 4 4 chr6 170949314 170949866 -11465376 + MER41A LTR ERV1 3 554 0 369 174 14 0 chr6 170949869 170949938 -11465304 + MIR SINE MIR 166 235 -27 189 278 37 37 chr6 170949911 170949965 -11465277 + L2 LINE L2 3213 3266 -6 * 4371 130 8 14 chr6 170950529 170951167 -11464075 + MER41B LTR ERV1 1 634 -1 3789 135 86 21 chr6 170951672 170952326 -11462916 - LTR34 LTR ERV1 0 699 4 921 86 0 0 chr6 170953343 170953459 -11461783 + L1PB1 LINE L1 6036 6151 0 21 0 0 0 chr6 170953519 170953540 -11461702 + AT_rich Low_complexity Low_complexity 1 21 0 1948 145 12 22 chr6 170954250 170954574 -11460668 - L1MC1 LINE L1 0 6333 6013 1809 165 27 0 chr6 170955726 170956023 -11459219 - AluSx SINE Alu -7 305 1 714 211 84 12 chr6 170956714 170956880 -11458362 + MER5B DNA MER1_type 1 178 0 639 163 0 10 chr6 170957370 170957468 -11457774 - AluS SINE Alu -215 98 2 2240 116 0 0 chr6 170957633 170957925 -11457317 + AluSx SINE Alu 1 292 -20 1252 218 95 34 chr6 170959250 170959599 -11455643 + MLT1A2 LTR MaLR 5 374 0 427 265 136 12 chr6 170959841 170960003 -11455239 + MER117 DNA MER1_type 1 182 -15 239 311 14 0 chr6 170961029 170961103 -11454139 - MER63B DNA MER1_type -9 425 351 189 237 79 26 chr6 170961249 170961325 -11453917 + MIR SINE MIR 77 156 -106 239 305 185 0 chr6 170962522 170962673 -11452569 + MIR SINE MIR 47 225 -37 851 60 0 26 chr6 170963134 170963250 -11451992 - L1PA10 LINE L1 -3 6165 6053 414 211 163 72 chr6 170963810 170963976 -11451266 + MER5A DNA MER1_type 9 189 0 287 284 27 40 chr6 170963976 170964111 -11451131 + MIR SINE MIR 104 236 -26 2574 144 11 103 chr6 170964191 170964726 -11450516 - MER66B LTR ERV1 0 486 1 1613 243 70 0 chr6 170964763 170965146 -11450096 - MER63B DNA MER1_type -24 412 3 2337 115 0 0 chr6 170965164 170965468 -11449774 + AluSx SINE Alu 1 304 -8 239 232 40 0 chr6 170966713 170966812 -11448430 + (TA)n Simple_repeat Simple_repeat 2 104 0 208 258 65 0 chr6 170966853 170966915 -11448327 + L2 LINE L2 3203 3268 -4 633 209 52 0 chr6 170968306 170968459 -11446783 - FRAM SINE Alu -5 161 1 320 304 20 40 chr6 170968746 170968894 -11446348 + MIR3 SINE MIR 9 153 -55 2676 157 132 23 chr6 170970962 170971555 -11443687 + MER39 LTR ERV1 1 707 0 417 316 152 15 chr6 170973462 170973798 -11441444 - L3 LINE CR1 -3 1574 1193 963 256 63 47 chr6 170974563 170975025 -11440217 + MER39 LTR ERV1 5 684 -23 778 152 8 23 chr6 170975086 170975218 -11440024 + FLAM_C SINE Alu 1 130 -3 399 263 32 58 chr6 170975892 170976082 -11439160 + L1MC4 LINE L1 6823 7007 -1035 1904 151 0 18 chr6 170976093 170976378 -11438864 + AluSx SINE Alu 1 280 -32 217 0 61 0 chr6 170976380 170976413 -11438829 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 347 234 47 9 chr6 170976676 170976783 -11438459 + L1MC5 LINE L1 7302 7412 -549 300 256 36 54 chr6 170976912 170977080 -11438162 + L1MC5 LINE L1 7613 7777 -184 4636 218 27 2 chr6 170977330 170978257 -11436985 + MER21B-int LTR ERV1 2 951 -3240 228 35 0 0 chr6 170978269 170978298 -11436944 + (GA)n Simple_repeat Simple_repeat 2 30 0 2053 110 4 0 chr6 170978299 170978572 -11436670 - AluSx SINE Alu -35 277 4 5273 181 30 11 chr6 170978577 170979566 -11435676 + MER21B-int LTR ERV1 1817 2824 -1367 5860 173 35 18 chr6 170979570 170980685 -11434557 + MER21B-int LTR ERV1 3003 4136 -55 1727 229 107 79 chr6 170980779 170981571 -11433671 + MER21B LTR ERV1 1 926 -5 1752 199 78 9 chr6 170981730 170982155 -11433087 + MLT1C LTR MaLR 15 467 0 1845 201 37 3 chr6 170982296 170982649 -11432593 + MLT1A1 LTR MaLR 1 365 0 186 133 0 0 chr6 170982847 170982877 -11432365 + (CTCTG)n Simple_repeat Simple_repeat 4 33 0 731 209 20 46 chr6 170983502 170983698 -11431544 - MER89 LTR ERV1 -82 477 287 349 143 0 0 chr6 170983708 170983764 -11431478 - MER89 LTR ERV1 -502 57 2 449 305 15 29 chr6 170984112 170984384 -11430858 - L1MEd LINE L1 -4918 1201 934 416 279 58 35 chr6 170984872 170985044 -11430198 - L2 LINE L2 -10 3303 3128 1398 149 0 9 chr6 170985613 170985834 -11429408 + AluJo SINE Alu 88 306 -6 691 191 0 8 chr6 170985970 170986096 -11429146 - MER20 DNA MER1_type 0 219 95 249 339 48 8 chr6 170986122 170986246 -11428996 - MIR3 SINE MIR -42 166 38 582 301 10 5 chr6 170988456 170988655 -11426587 + MER3 DNA MER1_type 10 209 0 183 80 0 0 chr6 170989294 170989319 -11425923 + (T)n Simple_repeat Simple_repeat 1 25 0 732 257 91 19 chr6 170989938 170990203 -11425039 + L2 LINE L2 2404 2687 -627 378 293 132 36 chr6 170990272 170990688 -11424554 + L2 LINE L2 2832 3287 -26 2988 213 60 80 chr6 170990909 170991834 -11423408 - L1ME1 LINE L1 -6 6160 5254 7093 226 42 51 chr6 170991838 170992274 -11422968 - L1ME1 LINE L1 -1067 5079 4640 2551 84 0 0 chr6 170992274 170992584 -11422658 - AluY SINE Alu -1 310 1 7093 226 42 51 chr6 170992584 170994596 -11420646 - L1ME1 LINE L1 -1506 4640 2654 318 249 282 36 chr6 171094737 171095127 -11320115 + L2 LINE L2 48 533 -2781 2178 263 164 28 chr6 171095154 171096646 -11318596 + L2 LINE L2 1600 3311 -2 1115 119 21 52 chr6 171096789 171096957 -11318285 + MER3 DNA MER1_type 2 165 -44 2259 92 0 13 chr6 171096957 171097260 -11317982 + AluSx SINE Alu 3 301 -11 1115 119 21 52 chr6 171097260 171097284 -11317958 + MER3 DNA MER1_type 165 188 -21 660 101 138 0 chr6 171099633 171099742 -11315500 - MER41B LTR ERV1 0 635 512 1075 40 0 0 chr6 171099742 171099867 -11315375 + AluSg/x SINE Alu 172 296 -13 3040 95 20 20 chr6 171099867 171100308 -11314934 - MER41A LTR ERV1 -113 441 1 2233 114 0 0 chr6 171100335 171100633 -11314609 + AluSg SINE Alu 1 298 -12 2078 117 103 19 chr6 171100718 171101085 -11314157 - LTR14B LTR ERVK 0 608 211 275 65 22 22 chr6 171101073 171101119 -11314123 - LTR14B LTR ERVK -562 46 1 * 3882 62 15 15 chr6 171101122 171101862 -11313380 - HERVK14 LTR ERVK 0 5945 5038 331 62 0 0 chr6 171101862 171101910 -11313332 - HERV17 LTR ERV1 -8145 481 434 1124 28 49 0 chr6 171101911 171102053 -11313189 - HERV17 LTR ERV1 -3073 5553 5405 * 3350 70 5 0 chr6 171102032 171102446 -11312796 - HERV17 LTR ERV1 -4872 3754 3339 261 0 0 0 chr6 171103027 171103056 -11312186 + (TG)n Simple_repeat Simple_repeat 1 29 0 213 39 0 0 chr6 171103055 171103081 -11312161 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1417 207 70 40 chr6 171103244 171103674 -11311568 - L1MC4a LINE L1 -1601 6207 5765 6052 118 20 18 chr6 171103755 171104685 -11310557 + HSMAR2 DNA Mariner 2 933 -369 16079 116 25 6 chr6 171104685 171107033 -11308209 - Tigger1 DNA MER2_type -25 2393 3 625 253 97 4 chr6 171107060 171107297 -11307945 - L1M4 LINE L1 -2145 4001 3743 723 242 148 51 chr6 171107803 171108154 -11307088 + MER57B LTR ERV1 50 434 0 350 292 57 26 chr6 171108275 171108467 -11306775 - HAL1 LINE L1 -838 1669 1472 488 266 24 0 chr6 171108470 171108594 -11306648 + MER94 DNA DNA 2 128 -6 339 331 47 8 chr6 171108623 171108750 -11306492 - HAL1 LINE L1 -1030 1477 1346 1897 245 21 37 chr6 171108769 171109250 -11305992 + MER21B LTR ERV1 12 484 -379 705 188 16 0 chr6 171109261 171109389 -11305853 + LTR54B LTR ERV1 1 130 -368 625 186 11 17 chr6 171109393 171109570 -11305672 + CT-rich Low_complexity Low_complexity 4 179 0 208 154 0 26 chr6 171109582 171109621 -11305621 + CT-rich Low_complexity Low_complexity 3 40 0 1703 193 69 0 chr6 171109889 171110221 -11305021 + MLT1A1 LTR MaLR 10 364 -1 525 297 166 19 chr6 171110424 171110798 -11304444 - LTR67 LTR ERVL -7 550 122 1662 189 3 17 chr6 171112272 171112574 -11302668 + AluJo SINE Alu 1 298 -14 846 263 98 26 chr6 171112914 171113499 -11301743 + L1MC4 LINE L1 6336 7058 -835 334 181 0 64 chr6 171113567 171113661 -11301581 - L1PA16 LINE L1 0 6166 6079 969 136 23 40 chr6 171113674 171113850 -11301392 - THE1C LTR MaLR -2 373 201 6098 158 16 49 chr6 171113881 171115950 -11299292 - L1PB4 LINE L1 -193 5963 3846 234 234 31 16 chr6 171115943 171116007 -11299235 + L1MC5 LINE L1 7000 7064 -897 * 2576 41 0 0 chr6 171117390 171117683 -11297559 - AluY SINE Alu -18 293 1 1980 113 7 14 chr6 171118178 171118488 -11296754 + AluSg SINE Alu 1 308 0 2060 125 21 0 chr6 171119691 171119971 -11295271 + AluSx SINE Alu 1 286 -26 415 109 0 0 chr6 171120109 171120164 -11295078 + AluSq SINE Alu 105 159 -154 1306 143 83 0 chr6 171121378 171121595 -11293647 - MER46A DNA MER2_type -1 235 1 2345 101 7 0 chr6 171124067 171124373 -11290869 + AluSg SINE Alu 1 308 -2 2323 107 0 7 chr6 171124913 171125223 -11290019 + AluSg SINE Alu 1 308 -2 202 225 0 0 chr6 171125689 171125729 -11289513 + CT-rich Low_complexity Low_complexity 2 41 0 1368 152 26 79 chr6 171126267 171126363 -11288879 - MER33 DNA MER1_type -2261 324 225 1510 167 97 17 chr6 171126363 171126651 -11288591 + AluJo SINE Alu 1 311 -1 1368 152 26 79 chr6 171126651 171126896 -11288346 - MER33 DNA MER1_type -2360 225 1 257 236 146 9 chr6 171126999 171127109 -11288133 + L2 LINE L2 3189 3313 0 1852 147 43 9 chr6 171127442 171127769 -11287473 - MER44D DNA MER2_type 0 609 2 5193 172 58 64 chr6 171128769 171129787 -11285455 - L1MC1 LINE L1 0 6613 5587 2194 98 3 24 chr6 171129787 171130084 -11285158 - AluSx SINE Alu -21 291 1 5193 172 58 64 chr6 171130084 171130788 -11284454 - L1MC1 LINE L1 -1026 5587 4880 2201 213 10 7 chr6 171130788 171131192 -11284050 - Tigger7 DNA MER2_type -2075 412 8 3219 216 42 15 chr6 171131205 171131879 -11283363 - L1MC1 LINE L1 -3017 3409 2689 2720 183 39 57 chr6 171131879 171131947 -11283295 - MLT2B3 LTR ERVL 0 554 486 216 0 0 0 chr6 171131947 171131971 -11283271 + (TG)n Simple_repeat Simple_repeat 2 25 0 2720 183 39 57 chr6 171131971 171132466 -11282776 - MLT2B3 LTR ERVL -68 486 1 3219 216 42 15 chr6 171132466 171132919 -11282323 - L1MC1 LINE L1 -3737 2689 2250 416 92 31 0 chr6 171132932 171132997 -11282245 - Alu SINE Alu -8 302 236 213 288 110 0 chr6 171133892 171133965 -11281277 + MIR3 SINE MIR 121 201 -7 225 0 0 0 chr6 171134210 171134235 -11281007 + (TG)n Simple_repeat Simple_repeat 2 26 0 233 264 56 0 chr6 171134673 171134745 -11280497 - MIR SINE MIR -138 124 49 25 0 0 0 chr6 171134801 171134826 -11280416 + AT_rich Low_complexity Low_complexity 1 25 0 1723 187 3 3 chr6 171135003 171135297 -11279945 + AluJo SINE Alu 1 294 -18 2365 99 3 3 chr6 171136448 171136761 -11278481 + AluSp SINE Alu 1 313 0 22 0 0 0 chr6 171138806 171138828 -11276414 + GC_rich Low_complexity Low_complexity 1 22 0 2294 113 0 0 chr6 171139713 171140022 -11275220 + AluSx SINE Alu 1 309 -3 2252 122 0 0 chr6 171140032 171140335 -11274907 + AluSx SINE Alu 1 303 -9 758 258 152 6 chr6 171140393 171140722 -11274520 + L1MC4 LINE L1 5602 5978 -1830 25 0 0 0 chr6 171141085 171141110 -11274132 + AT_rich Low_complexity Low_complexity 1 25 0 327 230 164 30 chr6 171141326 171141491 -11273751 - MER5A DNA MER1_type -2 187 1 2132 123 23 3 chr6 171142915 171143216 -11272026 + AluSx SINE Alu 1 307 -5 353 289 0 0 chr6 171143828 171143942 -11271300 + L1MC4 LINE L1 7116 7229 -813 326 217 94 43 chr6 171144103 171144241 -11271001 + MER103 DNA DNA 3 147 -19 2045 139 7 0 chr6 171144241 171144529 -11270713 - AluSx SINE Alu -22 290 1 257 259 43 79 chr6 171144718 171144857 -11270385 + MIR SINE MIR 64 197 -65 1332 175 50 143 chr6 171145221 171145696 -11269546 + L1MB7 LINE L1 5738 6168 -16 2110 92 0 31 chr6 171145733 171146027 -11269215 - AluY SINE Alu -26 285 1 438 216 63 23 chr6 171146144 171146334 -11268908 + L1MC4 LINE L1 7023 7229 -733 265 284 14 50 chr6 171146545 171146686 -11268556 + L1MC5 LINE L1 7305 7440 -521 1851 160 114 31 chr6 171146751 171147259 -11267983 - MER39 LTR ERV1 -1 706 1 3174 199 95 9 chr6 171147259 171147844 -11267398 - Charlie5 DNA MER1_type -6 2618 1932 2348 95 3 0 chr6 171147844 171148140 -11267102 - AluSq SINE Alu -15 298 2 3174 199 95 9 chr6 171148140 171148430 -11266812 - Charlie5 DNA MER1_type -692 1932 1668 4588 113 195 91 chr6 171148432 171149703 -11265539 - pTR5 LTR ERV1 -162 2276 741 2005 198 118 0 chr6 171149752 171150151 -11265091 + L1M1 LINE L1 17 462 -7103 2204 91 3 20 chr6 171150795 171151093 -11264149 - AluSg SINE Alu -17 293 1 238 254 201 0 chr6 171151557 171151691 -11263551 - L2 LINE L2 -222 3091 2931 261 83 0 0 chr6 171152372 171152408 -11262834 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 250 68 136 0 chr6 171152640 171152684 -11262558 + MERVL LTR ERVL 4452 4501 -984 1338 228 25 38 chr6 171152688 171153056 -11262186 + MLT1A2 LTR MaLR 1 363 -11 1772 174 20 52 chr6 171153721 171154124 -11261118 - MLT1B LTR MaLR 0 390 1 484 220 0 68 chr6 171154742 171154874 -11260368 + MER3 DNA MER1_type 87 209 0 222 365 61 0 chr6 171155057 171155205 -11260037 - L2 LINE L2 -604 2710 2554 2473 41 27 0 chr6 171155564 171155858 -11259384 + AluY SINE Alu 1 302 -9 2152 126 3 3 chr6 171156240 171156550 -11258692 - AluSx SINE Alu -2 310 1 2396 70 3 10 chr6 171156876 171157177 -11258065 + AluSx SINE Alu 2 300 -12 1767 158 55 17 chr6 171157824 171158116 -11257126 - MER7A DNA MER2_type -3 343 43 267 31 0 0 chr6 171158116 171158148 -11257094 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 376 182 45 0 chr6 171158167 171158233 -11257009 + Tigger3(Golem) DNA MER2_type 1 69 -2960 912 121 0 0 chr6 171158235 171158376 -11256866 + (TCTCCC)n Simple_repeat Simple_repeat 3 143 0 2007 169 43 27 chr6 171158663 171159106 -11256136 - L1MB8 LINE L1 -4 6174 5725 1817 126 29 0 chr6 171159106 171159380 -11255862 - L1MA4A LINE L1 -6 6297 6012 1175 212 26 36 chr6 171159667 171159974 -11255268 - MLT1A1 LTR MaLR -61 304 1 1838 88 4 0 chr6 171160582 171160810 -11254432 + AluSq SINE Alu 1 229 -84 207 179 26 13 chr6 171162706 171162784 -11252458 + (TA)n Simple_repeat Simple_repeat 1 79 0 1082 272 130 14 chr6 171163039 171163484 -11251758 + LTR40a LTR ERVL 4 500 -19 1100 230 135 52 chr6 171163576 171164042 -11251200 + MLT1D LTR MaLR 1 505 0 205 118 39 0 chr6 171164279 171164330 -11250912 + (TG)n Simple_repeat Simple_repeat 1 53 0 300 319 0 0 chr6 171164728 171164998 -11250244 + (CA)n Simple_repeat Simple_repeat 1 270 0 2021 142 0 0 chr6 171170574 171170881 -11244361 + AluSx SINE Alu 1 312 0 289 335 55 12 chr6 171171348 171171512 -11243730 + LTR16C LTR ERVL 321 491 0 543 204 12 7 chr6 171171605 171172049 -11243193 + (CACCAT)n Simple_repeat Simple_repeat 1 446 0 253 266 13 7 chr6 171172091 171172245 -11242997 + (CACCAT)n Simple_repeat Simple_repeat 3 157 0 540 309 9 7 chr6 171172260 171172719 -11242523 + (CCA)n Simple_repeat Simple_repeat 1 460 0 1661 160 91 16 chr6 171173067 171173412 -11241830 + MLT2D LTR ERVL 3 380 -34 309 51 0 0 chr6 171173412 171173451 -11241791 + (CA)n Simple_repeat Simple_repeat 2 40 0 1661 160 91 16 chr6 171173451 171173480 -11241762 + MLT2D LTR ERVL 380 405 -9 2058 115 0 75 chr6 171173575 171173897 -11241345 + AluSx SINE Alu 1 298 -14 2844 196 47 2 chr6 171176023 171176599 -11238643 - L1MB3 LINE L1 -1 6182 5581 192 296 42 78 chr6 171176905 171177047 -11238195 + MIR SINE MIR 76 212 -50 2240 167 117 25 chr6 171177105 171177619 -11237623 + MER34B LTR ERV1 1 561 -4 2474 91 0 0 chr6 171177682 171177991 -11237251 - AluSx SINE Alu -3 309 1 284 313 61 0 chr6 171179572 171179671 -11235571 - L2 LINE L2 -4 3309 3205 326 248 120 0 chr6 171180345 171180462 -11234780 + MIR SINE MIR 20 150 -112 975 213 85 74 chr6 171180691 171181044 -11234198 + MER34B LTR ERV1 11 367 -198 21 0 0 0 chr6 171181044 171181065 -11234177 + AT_rich Low_complexity Low_complexity 1 21 0 27746 24 5 1 chr6 171181075 171185238 -11230004 + L1PA3 LINE L1 1971 6152 -3 2102 130 0 10 chr6 171185249 171185541 -11229701 - AluSx SINE Alu -22 290 2 674 162 71 56 chr6 171185541 171185739 -11229503 + MER34B LTR ERV1 346 546 -19 2242 108 0 38 chr6 171185743 171186059 -11229183 - AluSg SINE Alu -6 304 1 2380 105 0 9 chr6 171186704 171187019 -11228223 - AluSx SINE Alu 0 312 1 392 242 176 26 chr6 171187090 171187243 -11227999 - MER5A DNA MER1_type 0 189 14 2153 110 3 38 chr6 171187400 171187719 -11227523 - AluSx SINE Alu -4 308 1 2191 125 0 13 chr6 171188500 171188804 -11226438 + AluSx SINE Alu 1 300 -12 1913 162 0 17 chr6 171189555 171189851 -11225391 - AluJo SINE Alu -21 291 1 194 274 84 32 chr6 171190564 171190659 -11224583 + L3 LINE CR1 105 204 -1373 351 378 33 12 chr6 171191672 171191913 -11223329 + MIR SINE MIR 14 259 -3 318 26 0 0 chr6 171192578 171192616 -11222626 - AluSg/x SINE Alu -108 194 157 195 100 0 0 chr6 171192823 171192853 -11222389 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2303 105 3 0 chr6 171194873 171194892 -11220350 - AluSx SINE Alu -7 305 288 207 0 0 0 chr6 171194892 171194915 -11220327 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2303 105 3 0 chr6 171194915 171195199 -11220043 - AluSx SINE Alu -24 288 1 221 308 31 0 chr6 171195288 171195353 -11219889 - L2 LINE L2 -19 3294 3228 1219 224 98 6 chr6 171195453 171195801 -11219441 - MER89 LTR ERV1 -176 383 4 738 189 12 24 chr6 171195803 171195967 -11219275 + MLT1D LTR MaLR 339 500 -5 3708 96 8 2 chr6 171196179 171196688 -11218554 - MER75 DNA T2_type -2 512 1 672 286 70 5 chr6 171198129 171198342 -11216900 + MIR SINE MIR 11 237 -25 1083 143 10 153 chr6 171198684 171198984 -11216258 - Tigger2 DNA MER2_type 0 2718 2462 3973 175 14 14 chr6 171199038 171199797 -11215445 - Tigger2 DNA MER2_type -1959 759 1 213 310 0 0 chr6 171200547 171200605 -11214637 - L2 LINE L2 -6 3266 3209 183 229 43 71 chr6 171200665 171200735 -11214507 + L2 LINE L2 3205 3272 0 555 196 63 0 chr6 171201236 171201379 -11213863 - MER20 DNA MER1_type -51 168 17 204 206 0 0 chr6 171204022 171204056 -11211186 + polypyrimidine Low_complexity Low_complexity 3 36 0 182 344 16 0 chr6 171204781 171204845 -11210397 - MIR SINE MIR -108 100 36 326 129 16 0 chr6 171207089 171207151 -11208091 + (TG)n Simple_repeat Simple_repeat 1 63 0 233 278 133 50 chr6 171207803 171208044 -11207198 + L1ME LINE L1 5351 5611 -510 4820 163 63 15 chr6 171208092 171208709 -11206533 + L1PB4 LINE L1 4468 5054 -1102 2228 89 0 11 chr6 171208709 171208989 -11206253 + AluSg SINE Alu 1 277 -33 306 0 0 0 chr6 171208989 171209023 -11206219 + (CA)n Simple_repeat Simple_repeat 1 34 0 4820 163 63 15 chr6 171209023 171210002 -11205240 + L1PB4 LINE L1 5053 6155 -1 2430 100 0 0 chr6 171210009 171210318 -11204924 + AluSg SINE Alu 1 309 -1 295 224 8 45 chr6 171210629 171210763 -11204479 + (TATAA)n Simple_repeat Simple_repeat 4 132 0 441 167 119 0 chr6 171213846 171213929 -11201313 + MLT1B LTR MaLR 1 93 -297 262 108 0 0 chr6 171213929 171213966 -11201276 + THE1B LTR MaLR 1 37 -391 2122 144 23 14 chr6 171213970 171214318 -11200924 + THE1B LTR MaLR 14 364 0 1318 171 19 76 chr6 171214318 171214633 -11200609 + MLT1B LTR MaLR 89 385 -5 288 257 15 7 chr6 171217277 171217413 -11197829 + GA-rich Low_complexity Low_complexity 3 139 0 358 273 84 7 chr6 171217701 171217855 -11197387 + MER20 DNA MER1_type 1 166 -53 255 31 0 0 chr6 171220778 171220810 -11194432 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1008 152 0 3 chr6 171222494 171223038 -11192204 + (CTCA)n Simple_repeat Simple_repeat 2 721 0 619 286 88 40 chr6 171223041 171223471 -11191771 - L2 LINE L2 0 3313 2863 205 357 101 5 chr6 171223504 171223703 -11191539 + L2 LINE L2 3095 3312 -1 2332 50 27 7 chr6 171224373 171224670 -11190572 + AluY SINE Alu 1 303 -8 22 0 0 0 chr6 171225118 171225140 -11190102 + AT_rich Low_complexity Low_complexity 1 22 0 635 289 138 10 chr6 171226345 171226650 -11188592 + L1MC2 LINE L1 5992 6335 -9 344 296 6 49 chr6 171227402 171227568 -11187674 - MIR SINE MIR -7 201 45 1817 152 10 3 chr6 171228987 171229277 -11185965 - AluJb SINE Alu -14 298 7 1434 248 70 23 chr6 171231752 171232179 -11183063 + MLT1C LTR MaLR 21 467 0 1525 198 17 3 chr6 171233423 171233721 -11181521 + AluJo SINE Alu 1 302 -10 320 293 55 56 chr6 171234606 171234829 -11180413 - MIR SINE MIR -21 241 7 260 341 24 44 chr6 171235603 171235808 -11179434 - L1MC4a LINE L1 -1860 5948 5748 269 384 65 0 chr6 171235822 171236051 -11179191 - L1MC4a LINE L1 -2123 5685 5442 338 0 24 0 chr6 171236271 171236313 -11178929 + (TA)n Simple_repeat Simple_repeat 1 43 0 2001 137 3 0 chr6 171236313 171236606 -11178636 - AluSq SINE Alu -19 294 1 803 114 98 0 chr6 171236606 171236729 -11178513 - AluSq/x SINE Alu -178 135 1 203 250 0 0 chr6 171238581 171238621 -11176621 + polypurine Low_complexity Low_complexity 3 42 0 235 288 195 0 chr6 171238990 171239108 -11176134 - MIR3 SINE MIR -19 189 49 220 316 77 43 chr6 171240008 171240125 -11175117 - L2 LINE L2 -4 3268 3148 375 360 64 11 chr6 171240246 171240510 -11174732 + MLT1L LTR MaLR 205 482 -133 22 0 0 0 chr6 171240592 171240614 -11174628 + AT_rich Low_complexity Low_complexity 1 22 0 213 196 0 0 chr6 171242048 171242094 -11173148 + (CA)n Simple_repeat Simple_repeat 1 46 0 327 198 55 0 chr6 171242653 171242744 -11172498 + MER20 DNA MER1_type 110 205 -14 823 171 77 134 chr6 171244839 171245189 -11170053 - Charlie1 DNA MER1_type -20 2741 2412 210 308 167 0 chr6 171246661 171246739 -11168503 - L2 LINE L2 -44 3228 3138 333 195 26 35 chr6 171247502 171247615 -11167627 - L1ME4a LINE L1 -45 6076 5965 245 226 0 0 chr6 171247765 171247818 -11167424 - L1ME4a LINE L1 -364 5757 5705 2168 92 6 49 chr6 171248497 171248823 -11166419 - AluSx SINE Alu 0 312 1 574 247 153 0 chr6 171249492 171249682 -11165560 + MER20 DNA MER1_type 1 219 0 1824 146 16 10 chr6 171251862 171252170 -11163072 + AluSx SINE Alu 3 312 0 32 26 0 0 chr6 171252171 171252210 -11163032 + AT_rich Low_complexity Low_complexity 1 39 0 191 339 0 42 chr6 171253524 171253642 -11161600 + MIR3 SINE MIR 42 154 -54 246 234 31 0 chr6 171255138 171255202 -11160040 + MLT1D LTR MaLR 24 89 -416 2608 97 17 14 chr6 171255202 171255563 -11159679 + THE1B LTR MaLR 1 362 -2 1380 223 97 15 chr6 171255714 171256104 -11159138 + MLT1D LTR MaLR 84 505 0 1392 209 71 20 chr6 171257679 171258029 -11157213 + L1MB3 LINE L1 5816 6183 0 1591 146 131 16 chr6 171258686 171259007 -11156235 - MER46B DNA MER2_type -3 233 1 207 0 0 0 chr6 171260414 171260437 -11154805 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 375 80 45 36 chr6 171263144 171263256 -11151986 + (CA)n Simple_repeat Simple_repeat 1 113 0 316 144 39 44 chr6 171263334 171263515 -11151727 + (CA)n Simple_repeat Simple_repeat 1 180 0 313 166 28 39 chr6 171263555 171263736 -11151506 + (CA)n Simple_repeat Simple_repeat 2 180 0 253 219 9 9 chr6 171263785 171263890 -11151352 + (CA)n Simple_repeat Simple_repeat 1 105 0 283 281 136 78 chr6 171266242 171266346 -11148896 - L1MC4 LINE L1 0 8042 7946 576 0 0 0 chr6 171266346 171266410 -11148832 + (TA)n Simple_repeat Simple_repeat 2 65 0 283 281 136 78 chr6 171266410 171267105 -11148137 - L1MC4 LINE L1 -96 7946 7196 2844 193 67 13 chr6 171267564 171267888 -11147354 + L1MB4 LINE L1 5461 5766 -414 261 57 0 0 chr6 171267888 171267923 -11147319 + (CA)n Simple_repeat Simple_repeat 2 36 0 2844 193 67 13 chr6 171267923 171268281 -11146961 + L1MB4 LINE L1 5766 6180 0 1337 131 75 0 chr6 171268786 171269000 -11146242 + MER30 DNA MER1_type 1 230 0 273 330 43 0 chr6 171269224 171269339 -11145903 - MIR3 SINE MIR -8 200 81 608 131 0 10 chr6 171271516 171271615 -11143627 + MER4A LTR ERV1 1 98 -566 1592 122 170 96 chr6 171271615 171271991 -11143251 + MER4A LTR ERV1 261 664 0 231 61 0 0 chr6 171272976 171273009 -11142233 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1477 152 130 33 chr6 171273012 171273106 -11142136 + AluJb SINE Alu 1 84 -228 2537 107 150 58 chr6 171273106 171273256 -11141986 + MER9 LTR ERVK 1 136 -375 3003 6 0 0 chr6 171273256 171273574 -11141668 - AluYb8 SINE Alu 0 318 1 2537 107 150 58 chr6 171273574 171273891 -11141351 + MER9 LTR ERVK 136 511 0 1477 152 130 33 chr6 171273891 171274072 -11141170 + AluJb SINE Alu 84 303 -9 1870 153 16 108 chr6 171275662 171276086 -11139156 + MLT2B1 LTR ERVL 1 385 -135 1224 210 12 4 chr6 171276116 171276368 -11138874 + MLT2B1 LTR ERVL 267 520 0 1176 170 32 28 chr6 171276368 171276621 -11138621 + MLT-int LTR MaLR 1 254 -1481 597 271 38 105 chr6 171276600 171277047 -11138195 + MLT-int LTR MaLR 641 1057 -678 * 1556 187 62 78 chr6 171277181 171277614 -11137628 + MLT1A1-int LTR MaLR 1310 1735 0 1800 177 43 6 chr6 171277615 171277966 -11137276 + MLT1A1 LTR MaLR 2 365 0 225 372 53 11 chr6 171279271 171279365 -11135877 + MIR SINE MIR 56 153 -109 26 0 0 0 chr6 171279365 171279391 -11135851 + AT_rich Low_complexity Low_complexity 1 26 0 243 234 99 78 chr6 171280532 171280673 -11134569 - MIR SINE MIR -80 182 39 423 276 77 29 chr6 171280697 171280867 -11134375 + MER5B DNA MER1_type 1 178 0 284 267 51 97 chr6 171281701 171281877 -11133365 - MIR3 SINE MIR -5 203 36 1978 140 19 26 chr6 171282141 171282448 -11132794 - AluJo SINE Alu -7 305 1 2164 244 29 9 chr6 171283347 171283930 -11131312 - L1MB8 LINE L1 -5 6173 5579 7417 46 2 1 chr6 171284016 171285378 -11129864 + L1PA5 LINE L1 4789 6151 -3 375 294 21 131 chr6 171285469 171285661 -11129581 - MER5A DNA MER1_type -8 181 1 1139 235 87 46 chr6 171285954 171286451 -11128791 + LTR53 LTR ERVL 3 519 0 198 0 0 0 chr6 171288644 171288666 -11126576 + (TG)n Simple_repeat Simple_repeat 2 23 0 1161 143 4 119 chr6 171289600 171289740 -11125502 + AluJo SINE Alu 1 103 -209 2568 74 0 0 chr6 171289740 171290050 -11125192 + AluY SINE Alu 1 310 -1 1161 143 4 119 chr6 171290050 171290153 -11125089 + AluJo SINE Alu 103 216 -96 258 209 75 0 chr6 171293261 171293328 -11121914 - MER116 DNA Mariner -8 72 1 249 301 41 0 chr6 171293908 171293981 -11121261 - MIR SINE MIR -70 192 117 188 200 18 0 chr6 171294068 171294123 -11121119 + T-rich Low_complexity Low_complexity 3 58 0 1956 88 84 28 chr6 171294732 171295017 -11120225 - AluSg SINE Alu -9 301 1 196 383 40 27 chr6 171298689 171298838 -11116404 + L3 LINE CR1 154 304 -1273 277 255 21 83 chr6 171299080 171299225 -11116017 + MER5A DNA MER1_type 5 140 -49 * 715 276 189 11 chr6 171299212 171299578 -11115664 + L2 LINE L2 1846 2276 -1038 396 364 70 31 chr6 171299666 171300053 -11115189 - L1MEd LINE L1 -5716 403 2 936 149 0 0 chr6 171302745 171302879 -11112363 - AluJb SINE Alu -9 303 170 239 350 35 7 chr6 171303752 171303895 -11111347 + L1ME LINE L1 5677 5823 -298 4133 226 60 8 chr6 171303915 171305769 -11109473 + L1MD2 LINE L1 4397 6343 -16 2272 78 24 0 chr6 171306520 171306814 -11108428 + AluY SINE Alu 1 301 -10 1777 164 3 19 chr6 171308912 171309223 -11106019 - AluJb SINE Alu -6 306 1 2390 172 59 16 chr6 171310987 171311496 -11103746 + LTR26B LTR ERV1 14 531 0 291 83 42 42 chr6 171313675 171313723 -11101519 - MLT2C2 LTR ERVL 0 464 417 312 293 98 0 chr6 171313753 171313835 -11101407 + L1MC4 LINE L1 6614 6703 -1339 231 215 0 0 chr6 171313838 171313903 -11101339 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 771 236 54 96 chr6 171313905 171313949 -11101293 - MLT2D LTR ERVL -40 480 436 198 0 0 0 chr6 171313949 171313971 -11101271 + (GA)n Simple_repeat Simple_repeat 1 22 0 771 236 54 96 chr6 171313971 171314328 -11100914 - MLT2D LTR ERVL -84 436 7 465 56 0 0 chr6 171317516 171317570 -11097672 + MER30 DNA MER1_type 1 54 -176 289 318 62 8 chr6 171317737 171317866 -11097376 - MIR SINE MIR -16 246 111 312 287 139 0 chr6 171318007 171318108 -11097134 + MIR SINE MIR 70 184 -78 206 245 19 19 chr6 171318289 171318342 -11096900 - L2 LINE L2 -92 3221 3169 185 300 150 17 chr6 171318365 171318485 -11096757 - L2 LINE L2 -4 3268 3133 2166 104 0 16 chr6 171324131 171324449 -11090793 + AluSq SINE Alu 1 313 0 502 296 110 74 chr6 171326402 171326891 -11088351 + L1ME4a LINE L1 4268 4774 -1372 875 302 121 65 chr6 171327349 171328091 -11087151 + L1ME4a LINE L1 5311 6094 -27 3392 132 26 23 chr6 171329942 171330512 -11084730 - L1PA16 LINE L1 0 6166 5595 212 279 127 57 chr6 171331580 171331703 -11083539 - MIR3 SINE MIR -6 202 89 2528 99 8 8 chr6 171331703 171332058 -11083184 + THE1A LTR MaLR 1 355 0 11897 88 14 1 chr6 171332058 171333619 -11081623 + THE1A-int LTR MaLR 1 1580 0 2368 121 8 8 chr6 171333619 171333974 -11081268 + THE1A LTR MaLR 1 355 0 212 279 127 57 chr6 171333974 171334006 -11081236 - MIR3 SINE MIR -118 90 34 248 378 54 22 chr6 171334152 171334337 -11080905 + MIR SINE MIR 6 196 -66 1272 114 105 9 chr6 171336174 171336384 -11078858 + MER30 DNA MER1_type 1 230 0 1855 100 44 4 chr6 171336692 171336990 -11078252 - AluSx SINE Alu 0 309 1 229 333 24 24 chr6 171337661 171337826 -11077416 + (CGGGG)n Simple_repeat Simple_repeat 4 168 0 1295 229 47 33 chr6 171339866 171340229 -11075013 - MLT1A2 LTR MaLR -2 372 5 195 100 0 0 chr6 171341298 171341328 -11073914 + (T)n Simple_repeat Simple_repeat 1 30 0 437 139 18 0 chr6 171342691 171342772 -11072470 + MLT1J2 LTR MaLR 65 133 -317 314 294 65 33 chr6 171342833 171342986 -11072256 + MLT1J2 LTR MaLR 247 404 -46 572 244 93 29 chr6 171343176 171343348 -11071894 + MIR SINE MIR 67 249 -13 27 0 0 0 chr6 171343453 171343480 -11071762 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr6 171346548 171346571 -11068671 + AT_rich Low_complexity Low_complexity 1 23 0 233 235 163 51 chr6 171346797 171346895 -11068347 + HAL1b LINE L1 360 468 -880 799 236 133 57 chr6 171347222 171347591 -11067651 + MLT1C LTR MaLR 67 463 -4 317 267 153 33 chr6 171348201 171348351 -11066891 - MIR SINE MIR -93 169 2 432 172 0 0 chr6 171349052 171349139 -11066103 + (AATAG)n Simple_repeat Simple_repeat 4 90 0 322 238 160 56 chr6 171349332 171349563 -11065679 + L1ME4a LINE L1 5088 5342 -804 250 288 171 17 chr6 171349749 171350100 -11065142 + L1ME4a LINE L1 5606 6010 -111 2522 46 0 0 chr6 171350258 171350561 -11064681 - AluY SINE Alu -8 303 1 222 372 124 21 chr6 171350705 171350850 -11064392 + MIR3 SINE MIR 3 162 -46 2059 126 3 3 chr6 171350850 171351151 -11064091 - AluSx SINE Alu -11 301 1 1986 186 28 30 chr6 171352045 171352604 -11062638 + MLT2A2 LTR ERVL 1 554 0 460 298 136 34 chr6 171355065 171355300 -11059942 + L3 LINE CR1 339 597 -980 356 269 80 96 chr6 171355631 171355796 -11059446 + L2 LINE L2 2966 3126 -146 1387 186 29 18 chr6 171355796 171356104 -11059138 - AluJo SINE Alu 0 311 1 356 269 80 96 chr6 171356104 171356249 -11058993 + L2 LINE L2 3126 3272 0 770 294 94 42 chr6 171357201 171358433 -11056809 + L1ME3A LINE L1 4632 5928 -242 205 297 63 45 chr6 171360376 171360487 -11054755 + MIR SINE MIR 113 225 -37 323 200 75 0 chr6 171360489 171360569 -11054673 - MER46C DNA MER2_type -122 216 131 4051 166 69 15 chr6 171362314 171362658 -11052584 + L1MB8 LINE L1 5162 5486 -692 2284 106 7 3 chr6 171362658 171362959 -11052283 + AluSq SINE Alu 1 302 -11 4051 166 69 15 chr6 171362959 171363564 -11051678 + L1MB8 LINE L1 5486 6162 -16 1031 175 0 12 chr6 171363658 171363829 -11051413 + AluJb SINE Alu 134 302 -10 2322 82 27 0 chr6 171365306 171365598 -11049644 - AluSq SINE Alu -12 301 2 436 267 163 36 chr6 171367344 171367698 -11047544 - MLT1K LTR MaLR 0 615 190 270 319 0 0 chr6 171368672 171368744 -11046498 + CT-rich Low_complexity Low_complexity 3 74 0 251 318 113 42 chr6 171369218 171369595 -11045647 + L2 LINE L2 2325 2803 -511 372 227 52 0 chr6 171370370 171370479 -11044763 - MLT1D LTR MaLR -2 624 390 800 200 105 30 chr6 171370513 171370808 -11044434 - MLT1D LTR MaLR -188 317 1 344 296 63 42 chr6 171371987 171372129 -11043113 - MIR SINE MIR -90 172 28 200 324 28 0 chr6 171376596 171376667 -11038575 - MIR SINE MIR -113 149 77 308 221 253 19 chr6 171378631 171378785 -11036457 + L2 LINE L2 3123 3312 -1 30 27 0 0 chr6 171379876 171379913 -11035329 + AT_rich Low_complexity Low_complexity 1 37 0 181 371 43 0 chr6 171380363 171380479 -11034763 + L2 LINE L2 3189 3309 -4 2276 90 3 0 chr6 171380642 171380931 -11034311 - AluSc SINE Alu -19 290 1 225 316 0 0 chr6 171380952 171381009 -11034233 + L2 LINE L2 3245 3301 -12 21 36 0 0 chr6 171382981 171383009 -11032233 + GC_rich Low_complexity Low_complexity 1 28 0 243 310 229 28 chr6 171385652 171385971 -11029271 - L2 LINE L2 -8 3305 2923 364 215 65 0 chr6 171387804 171387911 -11027331 - L1MA9 LINE L1 -216 6096 5983 526 184 20 0 chr6 171387918 171388016 -11027226 - L1MA9 LINE L1 -351 5940 5841 690 182 14 27 chr6 171388020 171388130 -11027112 + L1MA9 LINE L1 6167 6276 -36 2341 91 7 0 chr6 171388130 171388427 -11026815 + AluSp SINE Alu 1 299 -14 690 182 14 27 chr6 171388427 171388464 -11026778 + L1MA9 LINE L1 6276 6312 0 1871 173 0 16 chr6 171388732 171389044 -11026198 + AluJb SINE Alu 1 307 -5 588 273 195 0 chr6 171389132 171389363 -11025879 + MLT1L LTR MaLR 340 615 0 1684 148 88 0 chr6 171390436 171390699 -11024543 - AluSx SINE Alu -24 288 3 30 0 0 0 chr6 171390833 171390863 -11024379 + AT_rich Low_complexity Low_complexity 1 30 0 241 309 51 62 chr6 171391768 171392043 -11023199 + L2 LINE L2 2703 2974 -340 182 255 20 147 chr6 171392177 171392279 -11022963 + L2 LINE L2 3019 3107 -206 333 145 0 0 chr6 171392314 171392376 -11022866 + (TCC)n Simple_repeat Simple_repeat 3 64 0 204 351 126 9 chr6 171392400 171392511 -11022731 + L2 LINE L2 3179 3302 -11 385 331 15 0 chr6 171393896 171394032 -11021210 + L1MEd LINE L1 561 698 -5421 661 206 70 29 chr6 171394482 171394664 -11020578 + MER20 DNA MER1_type 1 194 -25 343 149 0 40 chr6 171394664 171394738 -11020504 + L1MC1 LINE L1 6263 6333 0 661 206 70 29 chr6 171394738 171394760 -11020482 + MER20 DNA MER1_type 194 214 -5 570 291 49 72 chr6 171396791 171397241 -11018001 + L1MEd LINE L1 921 1380 -5341 2293 114 13 0 chr6 171397241 171397549 -11017693 + AluSx SINE Alu 1 312 0 570 291 49 72 chr6 171397549 171398154 -11017088 + L1MEd LINE L1 1380 1990 -4731 305 311 107 40 chr6 171398385 171398562 -11016680 + L1MEd LINE L1 2304 2492 -4048 1094 279 75 32 chr6 171398571 171399012 -11016230 + LTR40c LTR ERVL 1 460 -5 550 268 86 11 chr6 171399061 171399418 -11015824 + L1MEd LINE L1 2543 2937 -3603 382 344 50 92 chr6 171399441 171399799 -11015443 + L2 LINE L2 2929 3271 -1 203 243 0 0 chr6 171399912 171399949 -11015293 + polypyrimidine Low_complexity Low_complexity 4 40 0 1778 222 50 9 chr6 171400498 171400939 -11014303 + MLT1C LTR MaLR 1 459 -8 254 277 54 66 chr6 171401232 171401398 -11013844 + L2 LINE L2 2918 3081 -191 244 263 0 0 chr6 171401638 171401695 -11013547 + MER20 DNA MER1_type 9 65 -154 1322 188 144 12 chr6 171401695 171402014 -11013228 - LTR51 LTR ERV1 -309 362 2 223 335 107 31 chr6 171403163 171403387 -11011855 + L2 LINE L2 2594 2834 -480 623 237 0 5 chr6 171403535 171404136 -11011106 + (CA)n Simple_repeat Simple_repeat 1 597 0 205 369 0 0 chr6 171405428 171405512 -11009730 + L2 LINE L2 3186 3269 -3 192 388 12 12 chr6 171406892 171406977 -11008265 - MIR SINE MIR -103 105 21 2221 114 0 0 chr6 171408863 171409160 -11006082 - AluSx SINE Alu -15 297 1 331 289 161 41 chr6 171410297 171410713 -11004529 - L1MC4 LINE L1 -143 7665 7200 351 365 43 28 chr6 171411511 171411971 -11003271 + L1ME3A LINE L1 5482 5948 -222 288 239 14 14 chr6 171412061 171412132 -11003110 + GA-rich Low_complexity Low_complexity 2 72 0 2117 125 7 0 chr6 171413685 171413981 -11001261 - AluSx SINE Alu -14 298 1 741 188 16 0 chr6 171415728 171415856 -10999386 - FLAM_C SINE Alu -3 130 1 630 164 0 0 chr6 171416100 171416222 -10999020 + (TG)n Simple_repeat Simple_repeat 1 122 0 296 293 45 83 chr6 171416254 171416387 -10998855 - L2 LINE L2 -6 3266 3139 522 296 113 33 chr6 171416568 171416898 -10998344 - L1ME LINE L1 -302 5819 5432 2067 133 3 0 chr6 171416898 171417191 -10998051 - AluSx SINE Alu -10 302 9 522 296 113 33 chr6 171417191 171417373 -10997869 - L1ME LINE L1 -689 5432 5266 1303 208 27 87 chr6 171418519 171418932 -10996310 + MLT1B LTR MaLR 1 388 -2 243 346 61 6 chr6 171419661 171419808 -10995434 + MIR SINE MIR 18 173 -68 1105 151 18 6 chr6 171420762 171420928 -10994314 + AluJo SINE Alu 1 168 -144 3824 179 41 30 chr6 171422250 171423078 -10992164 + L1MB3 LINE L1 5345 6181 -2 329 208 208 7 chr6 171424247 171424391 -10990851 - LTR50 LTR ERVL -8 787 615 212 103 51 0 chr6 171424578 171424617 -10990625 + CT-rich Low_complexity Low_complexity 5 45 0 * 332 59 20 0 chr6 171424608 171424659 -10990583 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 2011 129 13 19 chr6 171424684 171424993 -10990249 - AluJb SINE Alu -5 307 1 560 214 112 48 chr6 171426097 171426303 -10988939 + MLT1E LTR MaLR 375 593 0 1694 188 27 0 chr6 171426619 171426912 -10988330 - AluSx SINE Alu -11 301 1 974 113 81 0 chr6 171429425 171429585 -10985657 - MER30 DNA MER1_type 0 230 58 2277 108 0 0 chr6 171430470 171430767 -10984475 - AluSx SINE Alu -14 298 2 367 290 120 47 chr6 171431459 171431735 -10983507 - HAL1 LINE L1 -1310 1197 902 2221 116 0 7 chr6 171431833 171432135 -10983107 + AluSx SINE Alu 1 300 -12 1872 131 56 0 chr6 171433162 171433429 -10981813 - AluSx SINE Alu -13 299 18 231 200 17 17 chr6 171433522 171433582 -10981660 + L1MC5 LINE L1 7744 7803 -158 2099 107 0 35 chr6 171434973 171435283 -10979959 + AluSx SINE Alu 3 302 0 782 197 37 65 chr6 171435380 171435674 -10979568 + pTR5 LTR ERV1 743 1028 -1410 5151 106 18 96 chr6 171435751 171436647 -10978595 + LTR12 LTR ERV1 1 826 0 192 40 0 0 chr6 171437486 171437511 -10977731 + (CCCCCG)n Simple_repeat Simple_repeat 4 28 0 268 259 83 19 chr6 171438310 171438418 -10976824 + L2 LINE L2 3198 3312 -1 2153 198 62 17 chr6 171439914 171440379 -10974863 + MER66B LTR ERV1 1 486 0 193 248 195 7 chr6 171442391 171442540 -10972702 + L2 LINE L2 2949 3125 -147 326 263 81 0 chr6 171444621 171444720 -10970522 + MIR SINE MIR 110 216 -46 206 239 0 0 chr6 171446516 171446562 -10968680 + MIR SINE MIR 98 143 -65 231 257 0 59 chr6 171447979 171448080 -10967162 + A-rich Low_complexity Low_complexity 4 98 0 186 158 0 53 chr6 171450617 171450655 -10964587 - L2 LINE L2 0 3272 3237 196 333 48 0 chr6 171450657 171450741 -10964501 - L3 LINE CR1 -833 744 657 357 308 81 43 chr6 171450751 171450936 -10964306 - L2 LINE L2 0 3313 3122 894 156 6 38 chr6 171451322 171451482 -10963760 + MER1B DNA MER1_type 4 158 -139 1207 123 5 42 chr6 171451706 171451918 -10963324 + MER1B DNA MER1_type 136 339 0 350 324 24 47 chr6 171452143 171452356 -10962886 + L2 LINE L2 2208 2415 -899 1370 249 28 67 chr6 171452369 171452864 -10962378 + MLT2B1 LTR ERVL 5 480 -40 285 128 0 0 chr6 171452864 171452911 -10962331 + (TG)n Simple_repeat Simple_repeat 1 47 0 275 132 75 0 chr6 171452921 171452974 -10962268 + MLT2B1 LTR ERVL 464 520 0 598 272 80 67 chr6 171453148 171453523 -10961719 + MLT1J LTR MaLR 77 456 -55 230 322 127 0 chr6 171453627 171453745 -10961497 + L2 LINE L2 3181 3313 0 731 348 107 29 chr6 171454153 171455177 -10960065 - L2 LINE L2 -1918 1396 293 28 0 0 0 chr6 171456224 171456252 -10958990 + AT_rich Low_complexity Low_complexity 1 28 0 418 327 219 16 chr6 171460866 171461181 -10954061 + L2 LINE L2 2259 2637 -677 339 245 92 95 chr6 171461218 171461597 -10953645 + L1 LINE L1 3955 4332 -1814 1991 186 14 14 chr6 171461609 171461974 -10953268 + MLT1A1 LTR MaLR 1 365 0 312 324 46 9 chr6 171462074 171462182 -10953060 + L1 LINE L1 5288 5399 -747 1772 185 13 16 chr6 171463530 171463843 -10951399 - AluJb SINE Alu 0 312 1 192 340 21 62 chr6 171464877 171465021 -10950221 + MIR SINE MIR 75 212 -50 706 216 0 0 chr6 171465146 171465285 -10949957 + FLAM_C SINE Alu 2 140 -3 580 111 56 0 chr6 171466225 171466369 -10948873 + (TG)n Simple_repeat Simple_repeat 2 153 0 2271 220 73 40 chr6 171466431 171467489 -10947753 + L1MDa LINE L1 20 1427 -5113 457 242 13 134 chr6 171467490 171467870 -10947372 + L1MDa LINE L1 3456 3789 -2751 681 331 20 7 chr6 171467875 171468168 -10947074 - MER115 DNA AcHobo -396 297 1 219 69 0 0 chr6 171469109 171469138 -10946104 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1387 226 72 23 chr6 171470205 171470647 -10944595 + MLT1C LTR MaLR 3 466 -1 758 224 166 0 chr6 171471341 171471546 -10943696 - MER7A DNA MER2_type 0 336 98 2425 94 7 0 chr6 171471555 171471864 -10943378 + AluSx SINE Alu 1 311 -1 1644 192 20 14 chr6 171471885 171472239 -10943003 - MER6 DNA MER2_type -2 863 248 453 183 12 0 chr6 171472232 171472314 -10942928 - MER6 DNA MER2_type -782 83 1 * 389 258 0 0 chr6 171472314 171472406 -10942836 - MER7A DNA MER2_type -256 90 1 2327 103 6 3 chr6 171473635 171473947 -10941295 - AluSq SINE Alu 0 313 1 513 219 73 0 chr6 171474818 171474955 -10940287 - MER58B DNA MER1_type -5 336 190 540 195 57 0 chr6 171475091 171475214 -10940028 - MER58B DNA MER1_type -148 193 64 185 220 0 85 chr6 171476027 171476086 -10939156 - MIR SINE MIR 0 262 209 213 256 156 49 chr6 171476479 171476685 -10938557 - MIR3 SINE MIR 0 262 34 2468 90 3 0 chr6 171479488 171479799 -10935443 - AluSx SINE Alu 0 312 1 275 289 29 10 chr6 171479897 171480001 -10935241 + (TATG)n Simple_repeat Simple_repeat 1 106 0 370 289 134 21 chr6 171480032 171480226 -10935016 - L1M4 LINE L1 -3596 2550 2335 357 245 19 123 chr6 171480996 171481151 -10934091 - HAL1b LINE L1 -739 609 471 285 51 0 0 chr6 171483111 171483150 -10932092 + (CA)n Simple_repeat Simple_repeat 2 40 0 1506 189 78 9 chr6 171483686 171484008 -10931234 - MER2 DNA MER2_type 0 344 1 1709 201 24 3 chr6 171485143 171485437 -10929805 - AluJb SINE Alu -8 304 5 480 167 0 65 chr6 171485448 171485556 -10929686 + MER4-int LTR ERV1 3630 3730 -2868 1244 210 51 85 chr6 171485638 171486515 -10928727 + MER4-int LTR ERV1 3082 3308 -1628 2528 69 3 0 chr6 171486761 171487064 -10928178 + AluSp SINE Alu 2 305 -8 2566 179 71 0 chr6 171487278 171487757 -10927485 + LTR64 LTR ERVK 1 513 0 3467 141 31 0 chr6 171491156 171491667 -10923575 - MER1A DNA MER1_type 0 527 1 231 262 0 16 chr6 171492782 171492843 -10922399 + G-rich Low_complexity Low_complexity 5 64 0 255 293 104 27 chr6 171493663 171494001 -10921241 - L1ME4a LINE L1 -7 6114 5751 239 322 35 0 chr6 171494380 171494467 -10920775 - MIR SINE MIR -49 213 124 266 311 160 14 chr6 171495424 171495774 -10919468 - L3 LINE CR1 -12 1565 1165 246 222 111 0 chr6 171495778 171495841 -10919401 - L2 LINE L2 -8 3305 3236 309 233 82 14 chr6 171496242 171496315 -10918927 + L1 LINE L1 4941 5018 -1128 319 282 92 24 chr6 171496393 171496656 -10918586 + L1P5 LINE L1 5152 5431 -720 21 0 0 0 chr6 171497291 171497312 -10917930 + AT_rich Low_complexity Low_complexity 1 21 0 2256 102 0 19 chr6 171497644 171497957 -10917285 + AluSx SINE Alu 1 307 -5 1593 206 33 31 chr6 171500733 171500948 -10914294 - MLT1B LTR MaLR 0 390 172 2409 96 0 0 chr6 171500948 171501251 -10913991 - AluSq SINE Alu -10 303 1 1593 206 33 31 chr6 171501251 171501424 -10913818 - MLT1B LTR MaLR -218 172 1 1368 189 59 13 chr6 171502207 171502514 -10912728 - MER21B LTR ERV1 -14 849 529 2430 203 49 9 chr6 171502626 171503159 -10912083 - MER21B LTR ERV1 -309 554 1 251 281 90 0 chr6 171503206 171503295 -10911947 - L3 LINE CR1 -11 1566 1470 22 0 0 0 chr6 171508335 171508357 -10906885 + AT_rich Low_complexity Low_complexity 1 22 0 244 259 12 25 chr6 171508417 171508498 -10906744 - MIR3 SINE MIR -39 169 90 2153 196 54 26 chr6 171510019 171510559 -10904683 - MER74A LTR ERVL 0 558 4 503 259 20 20 chr6 171510675 171510822 -10904420 + MIR3 SINE MIR 51 197 -11 207 0 0 0 chr6 171511268 171511291 -10903951 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 30 0 0 0 chr6 171511771 171511801 -10903441 + AT_rich Low_complexity Low_complexity 1 30 0 2174 58 0 0 chr6 171511852 171512110 -10903132 + AluY SINE Alu 45 302 -9 2357 98 7 0 chr6 171512365 171512672 -10902570 + AluSp SINE Alu 1 309 -4 931 153 70 10 chr6 171512661 171512880 -10902362 + L1MB3 LINE L1 5950 6183 0 301 274 69 64 chr6 171512880 171512902 -10902340 + L1MA10 LINE L1 5992 6195 -139 213 154 0 0 chr6 171514866 171514905 -10900337 + (TG)n Simple_repeat Simple_repeat 1 39 0 1795 123 69 0 chr6 171516867 171517144 -10898098 - AluSx SINE Alu -16 296 1 231 204 0 0 chr6 171518157 171518211 -10897031 + (TG)n Simple_repeat Simple_repeat 2 55 0 603 230 128 41 chr6 171519142 171519338 -10895904 + MIR SINE MIR 6 218 -44 229 273 15 15 chr6 171521545 171521611 -10893631 + MIR SINE MIR 92 157 -105 23 33 0 0 chr6 171522141 171522171 -10893071 + AT_rich Low_complexity Low_complexity 1 30 0 360 0 0 0 chr6 171523574 171523614 -10891628 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 0 0 0 chr6 171524431 171524451 -10890791 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1978 139 7 0 chr6 171529187 171529497 -10885745 - AluSx SINE Alu 0 312 1 273 333 146 0 chr6 171530350 171530515 -10884727 + MIR SINE MIR 15 203 -59 336 272 82 52 chr6 171531954 171532186 -10883056 + L1MC/D LINE L1 2 240 -5879 1992 235 51 11 chr6 171532221 171532879 -10882363 - L1MB5 LINE L1 0 6174 5254 594 333 142 30 chr6 171533383 171533918 -10881324 + L1MC/D LINE L1 4097 4691 -1438 2053 116 7 0 chr6 171534281 171534575 -10880667 + AluSq SINE Alu 1 296 -17 312 384 13 68 chr6 171534664 171534974 -10880268 + L1MC/D LINE L1 5472 5764 -2027 250 163 47 0 chr6 171535154 171535197 -10880045 + MLT1B LTR MaLR 3 47 -343 673 231 47 102 chr6 171535952 171536355 -10878887 + MLT1B LTR MaLR 2 382 -8 769 145 24 157 chr6 171537636 171537805 -10877437 - MER20 DNA MER1_type 0 219 92 1972 119 7 7 chr6 171537805 171538099 -10877143 + AluSx SINE Alu 1 294 -18 769 145 24 157 chr6 171538099 171538178 -10877064 - MER20 DNA MER1_type -127 92 4 505 135 56 0 chr6 171538756 171538845 -10876397 + MLT2D LTR ERVL 4 97 -367 825 152 7 0 chr6 171538846 171539027 -10876215 - AluJb SINE Alu 0 328 147 1297 183 32 47 chr6 171539027 171539306 -10875936 + MLT2D LTR ERVL 100 374 -40 443 326 0 6 chr6 171539309 171539490 -10875752 + (TA)n Simple_repeat Simple_repeat 1 180 0 263 392 6 11 chr6 171539542 171539723 -10875519 + (CATA)n Simple_repeat Simple_repeat 1 180 0 226 398 0 12 chr6 171540051 171540212 -10875030 + (CATA)n Simple_repeat Simple_repeat 1 159 0 262 237 0 0 chr6 171540522 171540581 -10874661 + MLT2D LTR ERVL 462 520 0 497 272 89 12 chr6 171541000 171541169 -10874073 - MIR SINE MIR -69 193 12 321 248 226 20 chr6 171542559 171542865 -10872377 + L1ME4a LINE L1 5600 5968 -153 6924 73 2 13 chr6 171543035 171544300 -10870942 + L1PA8 LINE L1 4917 6171 -1 44536 41 4 2 chr6 171544310 171550451 -10864791 + L1PA4 LINE L1 3 6155 0 34 0 0 0 chr6 171550451 171550485 -10864757 + AT_rich Low_complexity Low_complexity 1 34 0 1843 98 0 0 chr6 171551744 171551990 -10863252 + AluSc SINE Alu 1 246 -63 248 182 125 57 chr6 171552304 171552392 -10862850 + MER34 LTR ERV1 449 542 0 2354 169 28 16 chr6 171552748 171553173 -10862069 - Tigger2a DNA MER2_type -1 433 4 440 191 169 71 chr6 171553999 171554224 -10861018 + Charlie2 DNA MER1_type 1 247 -2615 1889 230 97 36 chr6 171554314 171555149 -10860093 + Charlie2 DNA MER1_type 1874 2759 -103 959 153 18 0 chr6 171555166 171555336 -10859906 - L1PB1 LINE L1 0 6151 5979 1193 198 109 77 chr6 171555804 171556143 -10859099 + MLT1A1 LTR MaLR 16 365 0 1393 193 11 25 chr6 171556732 171557039 -10858203 - AluJo SINE Alu 0 309 7 27 0 0 0 chr6 171557338 171557365 -10857877 + AT_rich Low_complexity Low_complexity 1 27 0 2307 64 0 42 chr6 171557374 171557687 -10857555 + AluY SINE Alu 1 300 -11 190 287 75 53 chr6 171558011 171558105 -10857137 - MIR SINE MIR -86 176 81 314 266 87 77 chr6 171558182 171558389 -10856853 + L1MCa LINE L1 1877 2085 -4341 23 54 0 0 chr6 171560080 171560117 -10855125 + AT_rich Low_complexity Low_complexity 1 37 0 11361 157 102 11 chr6 171560383 171562622 -10852620 + L1M4c LINE L1 5 2447 -3937 257 245 202 0 chr6 171562627 171562721 -10852521 + L2 LINE L2 1908 2020 -1294 * 807 297 108 21 chr6 171562697 171563326 -10851916 + L2 LINE L2 2464 3162 -151 605 289 118 16 chr6 171563435 171563739 -10851503 + LTR16B LTR ERVL 27 361 -103 439 243 68 34 chr6 171563820 171563968 -10851274 + L2 LINE L2 3117 3269 -3 537 279 72 85 chr6 171564079 171564702 -10850540 + L1ME LINE L1 4474 5088 -1058 419 300 63 18 chr6 171564896 171565222 -10850020 + L1ME LINE L1 5291 5636 -530 1833 143 48 40 chr6 171565317 171565689 -10849553 - THE1C LTR MaLR 0 375 1 1251 165 9 5 chr6 171566825 171567043 -10848199 + AluJo SINE Alu 88 306 -6 2042 120 0 3 chr6 171567468 171567767 -10847475 + AluSx SINE Alu 1 298 -14 263 167 0 33 chr6 171567822 171567882 -10847360 + L2 LINE L2 2994 3051 -262 1163 211 71 26 chr6 171568855 171569163 -10846079 - MLT1C LTR MaLR 0 467 146 216 333 0 69 chr6 171569324 171569411 -10845831 + L2 LINE L2 3185 3265 -7 22 35 0 0 chr6 171569656 171569685 -10845557 + AT_rich Low_complexity Low_complexity 1 29 0 1263 135 27 0 chr6 171569823 171570008 -10845234 + Charlie3 DNA MER1_type 1 190 -2520 * 3098 109 2 12 chr6 171570003 171570435 -10844807 + MER1A DNA MER1_type 102 529 0 2086 110 0 47 chr6 171571659 171571976 -10843266 + AluSx SINE Alu 1 302 -10 207 139 0 0 chr6 171572787 171572823 -10842419 + (CA)n Simple_repeat Simple_repeat 2 37 0 1822 286 156 34 chr6 171572956 171573112 -10842130 - L1MC4 LINE L1 -1 8041 7905 2148 116 3 3 chr6 171573112 171573423 -10841819 - AluSx SINE Alu -1 311 1 1822 286 156 34 chr6 171573423 171574458 -10840784 - L1MC4 LINE L1 -137 7905 6704 1165 268 66 93 chr6 171574523 171574752 -10840490 - L1MC4a LINE L1 -1709 6099 5865 729 214 103 81 chr6 171574752 171574986 -10840256 + MER8 DNA MER2_type 1 239 0 1165 268 66 93 chr6 171574986 171575528 -10839714 - L1MC4a LINE L1 -1943 5865 5349 432 294 173 19 chr6 171576974 171577545 -10837697 + L2 LINE L2 2046 2704 -610 1398 228 31 47 chr6 171577590 171577972 -10837270 + MLT1B LTR MaLR 3 378 -12 251 314 73 16 chr6 171578063 171578187 -10837055 + L2 LINE L2 3168 3298 -15 288 0 0 0 chr6 171578190 171578222 -10837020 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 405 245 19 0 chr6 171578330 171578436 -10836806 + L1MC5 LINE L1 7107 7214 -747 959 280 80 37 chr6 171578482 171578839 -10836403 + L1MC5 LINE L1 7312 7707 -254 306 0 0 0 chr6 171578839 171578873 -10836369 + (TG)n Simple_repeat Simple_repeat 2 35 0 959 280 80 37 chr6 171578873 171579112 -10836130 + L1MC5 LINE L1 7707 7934 -27 480 248 110 80 chr6 171579119 171579418 -10835824 + L1ME LINE L1 5327 5634 -528 241 236 0 18 chr6 171579451 171579506 -10835736 + (TG)n Simple_repeat Simple_repeat 1 54 0 235 269 0 0 chr6 171579507 171579559 -10835683 + L1MC4 LINE L1 6660 6711 -1331 876 150 0 3 chr6 171579931 171580315 -10834927 + (TG)n Simple_repeat Simple_repeat 1 382 0 1932 152 18 6 chr6 171580955 171581284 -10833958 - MLT1A1 LTR MaLR -32 333 1 1327 217 28 16 chr6 171582386 171582500 -10832742 + L1MA9 LINE L1 5950 6061 -251 2274 97 43 126 chr6 171582500 171582985 -10832257 + MER65A LTR ERV1 1 445 0 1327 217 28 16 chr6 171582985 171583193 -10832049 + L1MA9 LINE L1 6061 6276 -36 4171 182 29 54 chr6 171583991 171584709 -10830533 + L1MB3 LINE L1 4904 5638 -545 2305 70 3 0 chr6 171584709 171585008 -10830234 + AluY SINE Alu 1 300 -11 4171 182 29 54 chr6 171585008 171585219 -10830023 + L1MB3 LINE L1 5638 5853 -330 1958 120 3 49 chr6 171585219 171585544 -10829698 + AluSq SINE Alu 3 312 -1 4171 182 29 54 chr6 171585544 171585917 -10829325 + L1MB3 LINE L1 5853 6183 0 765 100 45 0 chr6 171587150 171587460 -10827782 + (TAGA)n Simple_repeat Simple_repeat 1 324 0 200 284 18 110 chr6 171587721 171587830 -10827412 - MIR SINE MIR -162 100 2 474 200 121 21 chr6 171588418 171588558 -10826684 - MIR SINE MIR -1 261 108 5203 247 79 38 chr6 171588761 171589276 -10825966 - L1MB8 LINE L1 0 6178 5686 844 156 0 15 chr6 171589276 171589411 -10825831 - FLAM_C SINE Alu 0 133 1 5203 247 79 38 chr6 171589411 171589730 -10825512 - L1MB8 LINE L1 -492 5686 5382 1679 126 14 14 chr6 171589730 171590007 -10825235 + L1PA13 LINE L1 5886 6162 -1 5203 247 79 38 chr6 171590007 171590208 -10825034 - L1MB8 LINE L1 -796 5382 5191 315 0 0 0 chr6 171590208 171590243 -10824999 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 5203 247 79 38 chr6 171590243 171591813 -10823429 - L1MB8 LINE L1 -987 5191 3454 238 308 31 19 chr6 171591978 171592137 -10823105 - L1MCc LINE L1 -4891 1532 1372 253 284 0 0 chr6 171593732 171593806 -10821436 + L1MC4 LINE L1 7781 7854 -188 738 248 126 28 chr6 171594139 171594543 -10820699 + MLT1D LTR MaLR 29 461 -6 238 67 0 0 chr6 171595009 171595039 -10820203 + MLT1J2 LTR MaLR 154 183 -322 7212 45 1 26 chr6 171595139 171596198 -10819044 + L1PA5 LINE L1 5117 6153 -1 21 0 0 0 chr6 171596259 171596280 -10818962 + AT_rich Low_complexity Low_complexity 1 21 0 4106 65 19 8 chr6 171596280 171596802 -10818440 + LTR17 LTR ERV1 253 780 0 31416 60 14 19 chr6 171596802 171600807 -10814435 + HERV17 LTR ERV1 1 3983 -4643 19724 44 11 1 chr6 171600915 171603240 -10812002 + HERV17 LTR ERV1 3672 6019 -2607 279 77 0 0 chr6 171603233 171603272 -10811970 + HERV17 LTR ERV1 7510 7548 -1078 * 2561 38 0 0 chr6 171603262 171603554 -10811688 + HERV17 LTR ERV1 8335 8626 0 2661 65 6 0 chr6 171603554 171603878 -10811364 + LTR17 LTR ERV1 1 326 -454 27 0 0 0 chr6 171603878 171603905 -10811337 + AT_rich Low_complexity Low_complexity 1 27 0 496 177 121 14 chr6 171604228 171604369 -10810873 + MLT1C LTR MaLR 67 222 -245 639 214 16 0 chr6 171608125 171608251 -10806991 + MER57A LTR ERV1 272 399 -4 499 219 144 0 chr6 171608402 171608562 -10806680 + Charlie4 DNA MER1_type 26 208 -1753 295 167 192 13 chr6 171608573 171608651 -10806591 + Charlie4 DNA MER1_type 1857 1948 -13 232 233 0 17 chr6 171608673 171608733 -10806509 + MLT1J2 LTR MaLR 261 319 -131 427 274 39 20 chr6 171608740 171608893 -10806349 + MLT1J2 LTR MaLR 290 445 -5 278 261 54 31 chr6 171609785 171609915 -10805327 - MER5A DNA MER1_type -56 133 1 257 320 10 19 chr6 171611241 171611344 -10803898 + L2 LINE L2 3171 3272 0 207 0 0 0 chr6 171611722 171611745 -10803497 + (GGAGA)n Simple_repeat Simple_repeat 5 27 0 695 243 105 0 chr6 171611755 171611936 -10803306 + MLT1D LTR MaLR 256 455 -50 2137 96 36 3 chr6 171612717 171613020 -10802222 + AluSp SINE Alu 1 313 0 1325 154 125 21 chr6 171613026 171613306 -10801936 + AluJb SINE Alu 1 309 -3 965 195 67 104 chr6 171614220 171614625 -10800617 + MLT1C LTR MaLR 1 467 0 1160 151 5 10 chr6 171614789 171614988 -10800254 + L1PB1 LINE L1 3 200 -6663 14430 181 31 18 chr6 171614988 171620937 -10794305 + L1PB1 LINE L1 634 6866 -1 41 0 0 0 chr6 171620937 171620978 -10794264 + AT_rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr6 171621182 171621203 -10794039 + (TCTG)n Simple_repeat Simple_repeat 1 21 0 225 286 45 75 chr6 171623039 171623172 -10792070 + MIR SINE MIR 46 174 -88 847 159 30 0 chr6 171625183 171625315 -10789927 + AluJo SINE Alu 1 136 -176 3690 156 31 3 chr6 171626710 171627359 -10787883 + L1PB4 LINE L1 5482 6148 -8 1049 127 0 6 chr6 171627362 171627543 -10787699 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1955 182 11 6 chr6 171628175 171628526 -10786716 + MLT1A1 LTR MaLR 1 353 -12 201 286 18 0 chr6 171630043 171630099 -10785143 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 181 303 45 0 chr6 171631718 171631784 -10783458 - MIR3 SINE MIR -31 177 109 2215 86 10 0 chr6 171636027 171636319 -10778923 + AluSx SINE Alu 1 295 -17 201 171 0 0 chr6 171637053 171637088 -10778154 + A-rich Low_complexity Low_complexity 2 36 0 1611 182 19 32 chr6 171637305 171637613 -10777629 - AluJb SINE Alu -8 304 1 243 229 0 0 chr6 171637932 171637980 -10777262 + GA-rich Low_complexity Low_complexity 2 49 0 193 196 65 0 chr6 171638020 171638066 -10777176 + MIR SINE MIR 37 85 -123 1696 138 48 52 chr6 171638324 171638614 -10776628 + AluJo SINE Alu 3 291 -21 1253 239 102 26 chr6 171638743 171639175 -10776067 + MLT1C LTR MaLR 1 370 -4 2215 98 23 10 chr6 171639847 171640152 -10775090 + AluSc SINE Alu 1 309 0 2917 61 27 42 chr6 171640640 171641050 -10774192 + MLT2A1 LTR ERVL 1 404 -40 243 114 0 0 chr6 171641058 171641093 -10774149 - Alu SINE Alu -267 35 1 462 18 0 0 chr6 171641220 171641275 -10773967 + MLT2A1 LTR ERVL 390 444 0 1955 98 91 0 chr6 171641921 171642195 -10773047 + AluSq SINE Alu 1 299 -14 2180 91 0 24 chr6 171643663 171643960 -10771282 - AluSg SINE Alu -19 291 2 288 260 148 32 chr6 171646163 171646502 -10768740 - L2 LINE L2 -76 3237 2860 222 91 0 0 chr6 171648197 171648230 -10767012 + (CA)n Simple_repeat Simple_repeat 2 34 0 193 339 27 36 chr6 171648391 171648503 -10766739 + MIR SINE MIR 20 130 -132 284 308 197 0 chr6 171649074 171649191 -10766051 + MER91C DNA MER1_type 1 140 0 21 57 0 0 chr6 171649417 171649452 -10765790 + AT_rich Low_complexity Low_complexity 1 35 0 2605 152 77 37 chr6 171649482 171650099 -10765143 - MER4B LTR ERV1 0 779 1 715 191 23 8 chr6 171650146 171650277 -10764965 - MER41C LTR ERV1 -421 133 1 368 278 39 13 chr6 171650517 171650687 -10764555 + L1ME LINE L1 34 207 -5863 286 206 8 135 chr6 171650720 171650846 -10764396 + L1MEc LINE L1 20 129 -6267 3983 259 75 58 chr6 171650906 171652469 -10762773 + L1MEc LINE L1 136 1746 -4650 4357 116 9 5 chr6 171652469 171653125 -10762117 + L1PA15 LINE L1 5500 6158 -7 3983 259 75 58 chr6 171653125 171653659 -10761583 + L1MEc LINE L1 1746 2269 -4127 1517 209 64 3 chr6 171653674 171653985 -10761257 - MLT1A1 LTR MaLR -35 330 1 4068 239 67 65 chr6 171653985 171655869 -10759373 + L1MEc LINE L1 2226 4113 -2102 186 143 0 0 chr6 171655884 171655919 -10759323 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 313 53 0 0 chr6 171655955 171655993 -10759249 - tRNA-Gly-GGA tRNA tRNA -37 38 1 2541 251 100 9 chr6 171655999 171656688 -10758554 + MER21B LTR ERV1 55 806 -57 475 271 8 0 chr6 171656725 171656843 -10758399 + L1MEc LINE L1 4130 4248 -1967 * 34604 77 9 13 chr6 171656837 171661463 -10753779 + L1P LINE L1 5 4615 -1531 300 83 0 0 chr6 171663286 171663334 -10751908 + (CTCTG)n Simple_repeat Simple_repeat 4 51 0 581 285 35 7 chr6 171664065 171664248 -10750994 + L1MC4 LINE L1 6451 6639 -1356 548 277 95 4 chr6 171664269 171664511 -10750731 + L1MC4 LINE L1 6820 7083 -959 228 221 209 0 chr6 171664507 171664593 -10750649 + L1MC4a LINE L1 7168 7271 -537 * 797 279 115 27 chr6 171664681 171664919 -10750323 + L1MC4 LINE L1 7496 7780 -262 2568 59 0 3 chr6 171664919 171665223 -10750019 - AluY SINE Alu -8 303 1 797 279 115 27 chr6 171665223 171665357 -10749885 + L1MC4 LINE L1 7780 7901 -141 230 207 17 0 chr6 171665358 171665416 -10749826 + L1MC4 LINE L1 7984 8042 0 1113 224 100 30 chr6 171665751 171666112 -10749130 - MLT2C1 LTR ERVL 0 397 12 1914 98 83 11 chr6 171666801 171667077 -10748165 - AluSx SINE Alu -16 296 1 346 282 113 21 chr6 171668487 171668629 -10746613 + MIR SINE MIR 68 222 -40 2411 139 17 48 chr6 171668984 171669443 -10745799 + MER65A LTR ERV1 1 445 0 506 187 20 80 chr6 171669704 171669854 -10745388 + MER65A-int LTR ERV1 254 394 -4477 1718 208 65 86 chr6 171669883 171670082 -10745160 + MER65A-int LTR ERV1 552 754 -4117 7044 47 53 0 chr6 171670082 171670934 -10744308 - MER11D LTR ERVK 0 897 1 1718 208 65 86 chr6 171670934 171671406 -10743836 + MER65A-int LTR ERV1 754 1209 -3662 3416 203 61 51 chr6 171671416 171672422 -10742820 + MER65A-int LTR ERV1 1511 2526 -2345 1249 175 55 85 chr6 171672485 171673172 -10742070 + MER65A-int LTR ERV1 1546 2384 -4374 2381 103 0 6 chr6 171673176 171673487 -10741755 + AluSg1 SINE Alu 1 309 0 759 191 50 41 chr6 171673785 171674005 -10741237 + MER65A-int LTR ERV1 3511 3732 -2866 2244 208 80 51 chr6 171674095 171675525 -10739717 + MER65A-int LTR ERV1 2472 5093 -1137 275 233 23 58 chr6 171675523 171675611 -10739631 + MER65A-int LTR ERV1 3887 5049 -897 * 1047 245 82 8 chr6 171675697 171676132 -10739110 + MER65A-int LTR ERV1 3606 4129 -742 1559 235 56 25 chr6 171676134 171676577 -10738665 + MER65A-int LTR ERV1 4237 4693 -178 2420 135 45 43 chr6 171676584 171677028 -10738214 + MER65A LTR ERV1 1 445 0 191 273 61 45 chr6 171677671 171677737 -10737505 - L2 LINE L2 -8 3305 3239 600 130 237 53 chr6 171678049 171678180 -10737062 - AluSg/x SINE Alu -21 289 135 2003 138 41 0 chr6 171678181 171678472 -10736770 - AluSx SINE Alu -9 303 1 2263 109 0 13 chr6 171679047 171679351 -10735891 - AluSg SINE Alu -10 300 1 960 109 8 0 chr6 171679652 171679780 -10735462 + AluSp SINE Alu 30 158 -155 196 286 65 0 chr6 171679816 171679893 -10735349 + L2 LINE L2 3232 3313 0 350 304 6 0 chr6 171680336 171680497 -10734745 + (CCCTG)n Simple_repeat Simple_repeat 2 163 0 182 309 144 65 chr6 171681120 171681208 -10734034 - L2 LINE L2 -856 2458 2354 2366 94 13 0 chr6 171681208 171681516 -10733726 + AluSx SINE Alu 1 312 0 182 309 144 65 chr6 171681516 171681566 -10733676 - L2 LINE L2 -960 2354 2309 213 39 0 0 chr6 171682666 171682692 -10732550 + (A)n Simple_repeat Simple_repeat 1 26 0 239 234 130 13 chr6 171683427 171683504 -10731738 + MIR SINE MIR 166 251 -11 451 275 5 24 chr6 171685234 171685878 -10729364 + (CA)n Simple_repeat Simple_repeat 1 631 0 252 254 0 0 chr6 171688139 171688198 -10727044 - MER58 DNA MER1_type 0 2420 2362 1499 188 34 17 chr6 171688311 171688603 -10726639 - AluJo SINE Alu -14 298 2 1432 163 54 14 chr6 171689480 171689756 -10725486 + MER7A DNA MER2_type 1 285 -61 822 201 25 17 chr6 171690125 171690364 -10724878 + Charlie5 DNA MER1_type 2380 2620 0 2240 103 13 3 chr6 171690624 171690925 -10724317 - AluSg SINE Alu -6 304 1 234 0 0 0 chr6 171691181 171691207 -10724035 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 221 0 0 33 chr6 171691297 171691327 -10723915 + (TG)n Simple_repeat Simple_repeat 2 30 0 2293 147 56 19 chr6 171691327 171691741 -10723501 - MSTB1 LTR MaLR -3 429 1 2207 113 7 0 chr6 171692098 171692389 -10722853 - AluSq SINE Alu -20 293 1 242 277 115 39 chr6 171692594 171692724 -10722518 - MIR3 SINE MIR -15 193 54 2082 108 21 7 chr6 171694004 171694292 -10720950 + AluSq SINE Alu 1 292 -21 264 340 78 0 chr6 171694880 171694983 -10720259 - MIR SINE MIR -71 191 81 2267 131 0 0 chr6 171697008 171697305 -10717937 - AluSx SINE Alu -15 297 1 1068 228 162 12 chr6 171697435 171697694 -10717548 - AluJb SINE Alu -4 298 1 2003 205 90 6 chr6 171698267 171698788 -10716454 + L1MC2 LINE L1 5755 6319 -25 2423 81 0 0 chr6 171698792 171699090 -10716152 + AluSc SINE Alu 1 298 -11 331 282 35 29 chr6 171699850 171700024 -10715218 + C-rich Low_complexity Low_complexity 4 178 0 200 337 20 20 chr6 171700236 171700334 -10714908 + L2 LINE L2 2298 2395 -919 2527 80 3 0 chr6 171700501 171700813 -10714429 + AluSq SINE Alu 1 313 0 211 349 69 43 chr6 171701964 171702196 -10713046 + MIR SINE MIR 6 243 -19 2332 114 0 0 chr6 171703016 171703315 -10711927 + AluSx SINE Alu 1 299 -13 1989 125 59 0 chr6 171703885 171704174 -10711068 + AluSq SINE Alu 1 306 -7 2423 91 7 0 chr6 171704174 171704482 -10710760 + AluY SINE Alu 1 310 -1 6780 104 39 15 chr6 171705828 171706812 -10708430 - LTR13 LTR ERVK 0 1007 1 1494 222 77 20 chr6 171706835 171707277 -10707965 + MLT1C LTR MaLR 1 467 0 203 189 0 0 chr6 171707557 171707594 -10707648 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 589 268 86 16 chr6 171707860 171708103 -10707139 + MER46C DNA MER2_type 1 260 -78 1988 120 32 7 chr6 171708563 171708847 -10706395 + AluJb SINE Alu 7 297 -15 489 235 52 37 chr6 171709323 171709459 -10705783 - MIR SINE MIR -21 241 104 2046 90 90 0 chr6 171709684 171709962 -10705280 + AluSx SINE Alu 1 303 -9 1033 131 0 8 chr6 171710128 171710374 -10704868 + (CA)n Simple_repeat Simple_repeat 1 243 0 347 314 105 0 chr6 171712686 171712791 -10702451 + L2 LINE L2 3137 3252 -20 1331 79 11 8 chr6 171713177 171713233 -10702009 + AluSg/x SINE Alu 112 166 -146 4149 34 25 0 chr6 171713233 171713711 -10701531 - LTR2B LTR ERV1 0 490 1 1331 79 11 8 chr6 171713711 171713889 -10701353 + AluSg/x SINE Alu 166 312 0 693 204 211 31 chr6 171713892 171714152 -10701090 - MER92B LTR ERV1 -176 460 154 183 80 0 0 chr6 171714187 171714212 -10701030 + (T)n Simple_repeat Simple_repeat 1 25 0 623 230 46 0 chr6 171714482 171714634 -10700608 + MER69A DNA AcHobo 19 177 0 476 253 35 86 chr6 171715046 171715244 -10699998 - MLT1I LTR MaLR -17 392 205 1650 109 0 18 chr6 171715395 171715624 -10699618 - AluSg/x SINE Alu -2 310 86 341 211 35 70 chr6 171715963 171716077 -10699165 - MER4-int LTR ERV1 -5437 1161 1052 1990 90 50 14 chr6 171716190 171716467 -10698775 + AluSq SINE Alu 1 287 -26 26 50 0 0 chr6 171716480 171716520 -10698722 + AT_rich Low_complexity Low_complexity 1 40 0 4115 124 10 49 chr6 171716520 171716756 -10698486 - L1PA16 LINE L1 -9 6157 5913 2070 113 0 42 chr6 171716756 171716921 -10698321 - AluSx SINE Alu -16 296 148 2637 56 0 0 chr6 171716921 171717225 -10698017 - AluY SINE Alu -7 304 1 2070 113 0 42 chr6 171717225 171717368 -10697874 - AluSx SINE Alu -164 148 1 4115 124 10 49 chr6 171717368 171717698 -10697544 - L1PA16 LINE L1 -253 5913 5622 2419 85 0 3 chr6 171717698 171718005 -10697237 - AluSx SINE Alu -6 306 1 4115 124 10 49 chr6 171718005 171718147 -10697095 - L1PA16 LINE L1 -544 5622 5476 1037 178 0 76 chr6 171718147 171718325 -10696917 - AluJb SINE Alu -20 292 133 2389 81 3 0 chr6 171718325 171718621 -10696621 + AluSp SINE Alu 1 297 -16 1037 178 0 76 chr6 171718621 171718667 -10696575 - AluJb SINE Alu -179 133 85 12665 201 41 30 chr6 171718669 171719387 -10695855 - L1PA16 LINE L1 -678 5488 4779 2010 104 3 46 chr6 171719387 171719694 -10695548 - AluSc SINE Alu -15 294 1 12665 201 41 30 chr6 171719694 171719970 -10695272 - L1PA16 LINE L1 -1387 4779 4508 2318 111 0 0 chr6 171719970 171720267 -10694975 - AluSc SINE Alu -12 297 1 12665 201 41 30 chr6 171720267 171720386 -10694856 - L1PA16 LINE L1 -1658 4508 4392 2436 85 0 3 chr6 171720386 171720691 -10694551 - AluSq SINE Alu -9 304 1 1952 153 14 0 chr6 171720693 171720988 -10694254 - AluSx SINE Alu -13 299 1 12665 201 41 30 chr6 171720988 171723147 -10692095 - L1PA16 LINE L1 -1774 4392 2174 643 189 54 0 chr6 171723153 171723264 -10691978 - FLAM_C SINE Alu -25 118 2 503 267 1 8 chr6 171723431 171723577 -10691665 - L1MC4 LINE L1 -1018 6825 6623 2352 115 0 6 chr6 171723608 171723922 -10691320 - AluSx SINE Alu 0 312 1 457 209 168 25 chr6 171724682 171724944 -10690298 - LTR10B LTR ERV1 -209 296 1 677 225 97 47 chr6 171724979 171725237 -10690005 + LTR37B LTR ERV1 198 468 0 962 261 139 28 chr6 171725642 171726109 -10689133 + MLT1G LTR MaLR 1 519 -71 857 207 33 47 chr6 171726175 171726388 -10688854 - MER20 DNA MER1_type -9 210 1 556 125 0 0 chr6 171726760 171726840 -10688402 - AluS SINE Alu -229 84 5 4475 125 34 8 chr6 171726846 171728171 -10687071 - MER51B-int LTR ERV1 -6381 1435 1 2402 99 48 43 chr6 171728171 171728282 -10686960 - MER51B LTR ERV1 0 377 268 2296 100 3 3 chr6 171728282 171728591 -10686651 + AluSx SINE Alu 1 309 -3 2402 99 48 43 chr6 171728591 171728854 -10686388 - MER51B LTR ERV1 -109 268 1 2104 135 51 70 chr6 171728854 171729200 -10686042 + MSTA LTR MaLR 8 346 -82 1826 88 0 0 chr6 171729200 171729428 -10685814 + AluSg SINE Alu 2 229 -81 2104 135 51 70 chr6 171729428 171729510 -10685732 + MSTA LTR MaLR 346 428 0 1500 191 40 65 chr6 171729688 171730118 -10685124 + LTR56 LTR ERV1 1 419 -26 2272 90 46 9 chr6 171730118 171730463 -10684779 - L1PA14 LINE L1 -1 6160 5803 1942 95 37 7 chr6 171730495 171730768 -10684474 + AluSq SINE Alu 29 309 -4 24 24 0 24 chr6 171730810 171730830 -10684412 + AT_rich Low_complexity Low_complexity 1 20 -21 2312 62 38 0 chr6 171730830 171731119 -10684123 + AluY SINE Alu 1 300 -11 24 24 0 24 chr6 171731119 171731140 -10684102 + AT_rich Low_complexity Low_complexity 20 41 0 198 259 0 0 chr6 171731217 171731271 -10683971 + MIR SINE MIR 53 106 -102 697 214 33 105 chr6 171731596 171731900 -10683342 - MLT1G LTR MaLR -28 562 281 2002 113 28 50 chr6 171732141 171732461 -10682781 - AluSq SINE Alu 0 313 1 21 57 0 0 chr6 171733410 171733445 -10681797 + AT_rich Low_complexity Low_complexity 1 35 0 2182 112 3 0 chr6 171733634 171733928 -10681314 + AluSg SINE Alu 2 296 -14 2469 93 0 0 chr6 171734165 171734477 -10680765 + AluSx SINE Alu 1 312 0 2241 105 0 0 chr6 171734667 171734976 -10680266 + AluSq SINE Alu 1 309 0 2142 108 3 43 chr6 171735151 171735338 -10679904 - AluSx SINE Alu 0 312 142 2853 6 0 16 chr6 171735338 171735650 -10679592 - AluY SINE Alu -4 307 1 2142 108 3 43 chr6 171735650 171735787 -10679455 - AluSx SINE Alu -170 142 1 1601 198 77 26 chr6 171736044 171736459 -10678783 + MER63B DNA MER1_type 1 436 0 364 298 93 19 chr6 171736563 171736692 -10678550 - HAL1b LINE L1 -734 614 463 1820 157 51 0 chr6 171736692 171736986 -10678256 - AluJo SINE Alu -3 309 1 364 298 93 19 chr6 171736986 171737061 -10678181 - HAL1b LINE L1 -885 463 395 187 182 0 36 chr6 171737113 171737168 -10678074 + CT-rich Low_complexity Low_complexity 4 56 0 2478 72 13 0 chr6 171737327 171737631 -10677611 - AluSp SINE Alu -5 308 1 1900 208 51 22 chr6 171737762 171738253 -10676989 - MLT1D LTR MaLR 0 505 1 745 297 52 24 chr6 171738735 171739159 -10676083 + L1M4 LINE L1 4628 5063 -1083 2753 212 130 47 chr6 171739172 171739543 -10675699 + L1MC4 LINE L1 6780 7119 -923 2136 122 3 0 chr6 171739543 171739838 -10675404 - AluSx SINE Alu -16 296 1 2753 212 130 47 chr6 171739838 171739862 -10675380 + L1MC4 LINE L1 7119 7140 -902 2129 196 84 25 chr6 171739862 171740372 -10674870 - MLT1F LTR MaLR 0 542 3 2753 212 130 47 chr6 171740372 171740875 -10674367 + L1MC4 LINE L1 7140 7754 -288 3442 131 55 0 chr6 171740997 171741524 -10673718 - MER21A LTR ERV1 0 931 376 1343 113 57 9 chr6 171741529 171741741 -10673501 - MER21A LTR ERV1 -667 264 43 808 193 67 46 chr6 171741834 171742136 -10673106 + L1MC4 LINE L1 7745 7995 0 818 156 54 54 chr6 171742378 171742564 -10672678 - MER20 DNA MER1_type -31 188 3 842 168 0 0 chr6 171742622 171742753 -10672489 + FRAM SINE Alu 44 174 -2 3294 183 60 48 chr6 171743423 171744190 -10671052 - LTR19C LTR ERV1 0 779 4 246 188 31 47 chr6 171744190 171744254 -10670988 - MER34 LTR ERV1 -18 524 462 1699 168 12 37 chr6 171744257 171744585 -10670657 - LTR2B LTR ERV1 -12 478 159 575 136 8 112 chr6 171744587 171744712 -10670530 - MER34B LTR ERV1 -445 120 9 2247 93 10 10 chr6 171744825 171745126 -10670116 - AluSq SINE Alu -12 301 1 251 305 127 8 chr6 171745246 171745364 -10669878 + MIR SINE MIR 21 152 -56 496 218 98 8 chr6 171745516 171745649 -10669593 - MIR SINE MIR -109 153 9 2230 108 0 10 chr6 171745913 171746220 -10669022 - AluSg SINE Alu -6 304 1 1770 206 80 52 chr6 171746360 171746861 -10668381 + MLT2B1 LTR ERVL 6 520 0 2016 138 10 0 chr6 171746870 171747167 -10668075 - AluJb SINE Alu -12 300 1 571 282 62 35 chr6 171747624 171747851 -10667391 - LTR16C LTR ERVL -211 280 48 776 165 92 177 chr6 171747952 171748212 -10667030 - MER8 DNA MER2_type -1 238 1 471 214 84 19 chr6 171748213 171748367 -10666875 + HAL1b LINE L1 746 909 -439 15410 121 72 16 chr6 171748935 171749061 -10666181 - Tigger2 DNA MER2_type 0 2718 2600 2217 116 0 3 chr6 171749061 171749355 -10665887 - AluSx SINE Alu -18 294 2 15410 121 72 16 chr6 171749355 171750688 -10664554 - Tigger2 DNA MER2_type -118 2600 1343 2062 129 23 16 chr6 171750688 171750998 -10664244 - AluSx SINE Alu 0 312 1 15410 121 72 16 chr6 171750998 171752111 -10663131 - Tigger2 DNA MER2_type -1375 1343 1 197 252 9 103 chr6 171752246 171752353 -10662889 + MER5A DNA MER1_type 43 139 -50 422 220 8 8 chr6 171752935 171753053 -10662189 + MER4C LTR ERV1 3 120 -345 225 286 70 6 chr6 171753154 171753325 -10661917 + MER4C LTR ERV1 283 464 -1 381 219 21 21 chr6 171755354 171755450 -10659792 + MER103 DNA DNA 64 159 -7 1800 233 143 28 chr6 171756981 171757553 -10657689 - L1ME1 LINE L1 -5 6161 5524 21 36 0 0 chr6 171757922 171757950 -10657292 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 171758317 171758338 -10656904 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr6 171759740 171759777 -10655465 + AT_rich Low_complexity Low_complexity 1 37 0 223 304 118 10 chr6 171760623 171760725 -10654517 - L2 LINE L2 -8 3305 3193 578 290 35 0 chr6 171760916 171761116 -10654126 + MIR SINE MIR 23 229 -33 272 171 0 0 chr6 171761143 171761184 -10654058 - MER2 DNA MER2_type -28 317 277 2266 101 10 0 chr6 171761187 171761484 -10653758 + AluSc SINE Alu 1 300 -9 964 148 137 6 chr6 171761514 171761696 -10653546 - MER2 DNA MER2_type -139 206 1 2285 81 3 35 chr6 171763416 171763726 -10651516 - AluY SINE Alu -11 300 1 2198 135 0 32 chr6 171763925 171764066 -10651176 + AluSx SINE Alu 1 145 -157 1959 80 83 45 chr6 171764066 171764197 -10651045 + AluSq SINE Alu 5 130 -183 1985 102 88 0 chr6 171764197 171764482 -10650760 + AluSg SINE Alu 1 310 0 1959 80 83 45 chr6 171764482 171764638 -10650604 + AluSq SINE Alu 130 303 -10 2198 135 0 32 chr6 171764638 171764807 -10650435 + AluSx SINE Alu 145 301 -1 29 47 0 0 chr6 171765721 171765764 -10649478 + AT_rich Low_complexity Low_complexity 1 43 0 213 209 0 0 chr6 171766337 171766380 -10648862 + (TG)n Simple_repeat Simple_repeat 2 44 0 1666 161 73 45 chr6 171766567 171766922 -10648320 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr6 171767309 171767330 -10647912 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 171767381 171767410 -10647832 + AT_rich Low_complexity Low_complexity 1 29 0 2338 82 3 0 chr6 171768644 171768938 -10646304 + AluSx SINE Alu 1 295 -17 222 284 136 0 chr6 171770415 171770503 -10644739 + MER91C DNA MER1_type 10 109 -31 181 81 27 27 chr6 171770820 171770857 -10644385 + (TAAAAA)n Simple_repeat Simple_repeat 5 41 0 27 49 0 0 chr6 171770897 171770938 -10644304 + AT_rich Low_complexity Low_complexity 1 41 0 1481 174 24 31 chr6 171771220 171771514 -10643728 - AluJb SINE Alu -20 292 1 2293 71 0 0 chr6 171771924 171772247 -10642995 - AluY SINE Alu 0 323 1 1049 129 35 0 chr6 171772266 171772437 -10642805 - MER2 DNA MER2_type -135 210 34 1664 171 137 40 chr6 171772869 171773291 -10641951 - MLT1C LTR MaLR -3 464 2 2245 90 0 7 chr6 171773352 171773642 -10641600 - AluSc SINE Alu -21 288 1 1027 242 106 8 chr6 171773838 171774102 -10641140 + Tigger5 DNA MER2_type 1 290 -2033 337 331 64 28 chr6 171774304 171774555 -10640687 - MARNA DNA Mariner -172 414 155 2439 72 0 0 chr6 171775592 171775885 -10639357 + AluSx SINE Alu 14 306 -6 732 169 0 16 chr6 171775919 171776043 -10639199 + FLAM_A SINE Alu 21 142 0 205 344 77 15 chr6 171776221 171776416 -10638826 + MIR SINE MIR 6 212 -50 204 163 0 23 chr6 171776444 171776487 -10638755 + (TTA)n Simple_repeat Simple_repeat 1 42 0 333 0 0 0 chr6 171777212 171777249 -10637993 + (CA)n Simple_repeat Simple_repeat 2 38 0 1095 256 283 30 chr6 171778314 171779347 -10635895 - L2 LINE L2 -829 2485 1192 2219 101 0 3 chr6 171781035 171781323 -10633919 + AluSg SINE Alu 1 287 -23 274 371 46 71 chr6 171781679 171782029 -10633213 - L2 LINE L2 -6 3266 2926 288 240 164 71 chr6 171782561 171782786 -10632456 + MIR SINE MIR 11 256 -6 533 148 211 8 chr6 171783572 171783700 -10631542 - MIR SINE MIR -30 232 79 840 239 5 16 chr6 171783928 171784112 -10631130 - MER58C DNA MER1_type 0 215 34 1366 173 13 17 chr6 171784291 171784528 -10630714 - MER46A DNA MER2_type 0 236 1 1311 166 89 113 chr6 171784645 171785104 -10630138 - LTR7 LTR ERV1 -2 448 1 35 0 0 0 chr6 171786013 171786048 -10629194 + AT_rich Low_complexity Low_complexity 1 35 0 715 161 24 16 chr6 171786048 171786172 -10629070 - FLAM_A SINE Alu -8 125 1 211 275 199 15 chr6 171786182 171786313 -10628929 + L2 LINE L2 2897 3051 -262 248 250 73 42 chr6 171786327 171786423 -10628819 + L2 LINE L2 3161 3259 -54 282 356 105 5 chr6 171786914 171787133 -10628109 - MIR SINE MIR -14 248 8 21 0 0 0 chr6 171787461 171787482 -10627760 + AT_rich Low_complexity Low_complexity 1 21 0 2330 102 0 0 chr6 171788052 171788357 -10626885 - AluSg SINE Alu -1 309 5 24 0 0 0 chr6 171788495 171788519 -10626723 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 171788698 171788727 -10626515 + AT_rich Low_complexity Low_complexity 1 29 0 330 216 63 45 chr6 171789709 171789820 -10625422 + MIR SINE MIR 100 212 -50 304 277 160 80 chr6 171790456 171790515 -10624727 + MIR SINE MIR 48 101 -161 2359 82 0 3 chr6 171790515 171790818 -10624424 - AluY SINE Alu -8 303 2 304 277 160 80 chr6 171790818 171790946 -10624296 + MIR SINE MIR 101 250 -12 1977 150 10 3 chr6 171791750 171792057 -10623185 - AluSx SINE Alu -2 310 2 594 215 104 0 chr6 171792741 171792876 -10622366 - MER58B DNA MER1_type 0 341 193 5556 86 1 7 chr6 171793758 171794080 -10621162 - L1PB1 LINE L1 -1 6150 5828 2185 116 3 0 chr6 171794080 171794381 -10620861 - AluSx SINE Alu -10 302 1 5556 86 1 7 chr6 171794381 171794790 -10620452 - L1PB1 LINE L1 -323 5828 5423 2141 99 18 0 chr6 171796796 171797069 -10618173 - AluSg SINE Alu -32 278 1 203 281 227 52 chr6 171797465 171797767 -10617475 + L2 LINE L2 2836 3220 -93 225 0 0 0 chr6 171797767 171797792 -10617450 + (TG)n Simple_repeat Simple_repeat 2 26 0 203 281 227 52 chr6 171797792 171797873 -10617369 + L2 LINE L2 3220 3286 -27 2342 98 0 7 chr6 171798328 171798635 -10616607 - AluSq SINE Alu -8 305 1 1254 206 154 0 chr6 171798854 171799165 -10616077 + MLT1A1 LTR MaLR 7 365 0 180 261 134 37 chr6 171799417 171799551 -10615691 - L2 LINE L2 -265 3048 2902 1985 102 12 68 chr6 171800051 171800375 -10614867 - AluSx SINE Alu -6 306 1 2351 77 0 13 chr6 171800402 171800712 -10614530 + AluY SINE Alu 1 306 -5 25 31 0 0 chr6 171801074 171801106 -10614136 + AT_rich Low_complexity Low_complexity 1 32 0 392 203 16 16 chr6 171801248 171801376 -10613866 + GA-rich Low_complexity Low_complexity 2 129 0 333 242 108 36 chr6 171801650 171801933 -10613309 + LTR16A LTR ERVL 104 449 -1 497 329 67 4 chr6 171802268 171802508 -10612734 + MIR SINE MIR 8 262 0 196 354 76 0 chr6 171802597 171802676 -10612566 + L2 LINE L2 2986 3070 -202 906 126 0 22 chr6 171803064 171803199 -10612043 + AluJo SINE Alu 4 135 -177 1700 177 0 39 chr6 171803199 171803504 -10611738 + AluJb SINE Alu 1 293 -19 1889 227 133 24 chr6 171803506 171804250 -10610992 + MER69 DNA AcHobo 1687 2511 -15 3179 183 37 21 chr6 171804251 171804902 -10610340 - L1MB7 LINE L1 -107 6146 5486 1627 224 84 80 chr6 171804900 171804976 -10610266 - L1MB7 LINE L1 -3429 2786 2712 * 2150 128 37 35 chr6 171804976 171805350 -10609892 + THE1C LTR MaLR 1 375 0 1627 224 84 80 chr6 171805350 171805447 -10609795 - L1MB7 LINE L1 -3503 2712 2617 2109 126 19 13 chr6 171805447 171805757 -10609485 + AluSx SINE Alu 1 312 0 1627 224 84 80 chr6 171805757 171805780 -10609462 - L1MB7 LINE L1 -3598 2617 2596 3188 142 103 72 chr6 171805780 171806485 -10608757 - LTR8A LTR ERV1 0 727 1 1627 224 84 80 chr6 171806485 171807248 -10607994 - L1MB7 LINE L1 -3619 2596 1876 1967 136 26 0 chr6 171807832 171808134 -10607108 - AluSx SINE Alu -2 310 1 2172 116 7 3 chr6 171809421 171809731 -10605511 - AluSx SINE Alu -1 311 1 1065 186 199 17 chr6 171810367 171810658 -10604584 + MER2 DNA MER2_type 1 344 0 2201 117 0 0 chr6 171810843 171811134 -10604108 - AluSx SINE Alu -21 291 1 253 296 63 49 chr6 171811928 171812070 -10603172 + MLT1J2 LTR MaLR 263 406 -44 2284 238 106 28 chr6 171812143 171812237 -10603005 + L1MDa LINE L1 1267 1352 -5188 5338 107 47 92 chr6 171812237 171812978 -10602264 - MER4D LTR ERV1 0 903 213 2256 103 3 0 chr6 171812978 171813269 -10601973 + AluSq SINE Alu 3 294 -19 5338 107 47 92 chr6 171813269 171813473 -10601769 - MER4D LTR ERV1 -690 213 1 2284 238 106 28 chr6 171813473 171814243 -10600999 + L1MDa LINE L1 1352 2199 -4341 2377 226 65 95 chr6 171814282 171815100 -10600142 - MER21B LTR ERV1 -57 806 14 623 263 31 17 chr6 171815216 171815505 -10599737 + L1MDa LINE L1 2240 2532 -4008 8444 222 35 17 chr6 171815506 171817873 -10597369 + L1MDa LINE L1 3032 5441 -1099 3403 81 2 36 chr6 171817875 171818342 -10596900 - MLT2A2 LTR ERVL -2 451 1 10622 78 16 26 chr6 171818342 171818583 -10596659 - HERVL-A2 LTR ERVL 0 5654 5412 2568 65 0 3 chr6 171818583 171818891 -10596351 - AluY SINE Alu -4 307 1 10622 78 16 26 chr6 171818891 171820056 -10595186 - HERVL-A2 LTR ERVL -242 5412 4263 1331 59 0 6 chr6 171820056 171820239 -10595003 - MLT2A2 LTR ERVL -270 174 1 2636 179 77 36 chr6 171820239 171820838 -10594404 + L1MB7 LINE L1 5440 6128 -449 4498 167 63 12 chr6 171820838 171821658 -10593584 + MER21B LTR ERV1 1 862 -1 2636 179 77 36 chr6 171821658 171822057 -10593185 + L1MB7 LINE L1 6128 6509 -68 935 117 0 0 chr6 171822057 171822177 -10593065 - AluSq/x SINE Alu -186 126 7 1099 148 0 0 chr6 171822178 171822347 -10592895 + AluY SINE Alu 143 311 0 1505 246 76 34 chr6 171822347 171822982 -10592260 + L1MB8 LINE L1 2283 6244 -3 10755 191 29 50 chr6 171823023 171825299 -10589943 - L1PB1 LINE L1 0 6867 4545 1025 81 0 29 chr6 171825299 171825435 -10589807 - AluY SINE Alu -179 132 1 1495 82 5 0 chr6 171825439 171825634 -10589608 - AluSc SINE Alu -17 292 97 10755 191 29 50 chr6 171825634 171828941 -10586301 - L1PB1 LINE L1 -2325 4542 1300 3469 242 117 11 chr6 171828973 171830234 -10585008 + L1M4 LINE L1 2844 4237 -1909 488 203 17 33 chr6 171830371 171830550 -10584692 + MLT2F LTR ERVL 421 655 -8 2130 131 7 0 chr6 171830628 171830933 -10584309 - AluSx SINE Alu -5 307 1 907 152 11 0 chr6 171831008 171831186 -10584056 + CT-rich Low_complexity Low_complexity 1 180 0 220 184 132 26 chr6 171832439 171832515 -10582727 + MIR SINE MIR 109 192 -70 306 337 99 6 chr6 171832782 171832963 -10582279 + MIR SINE MIR 46 243 -19 1773 131 16 38 chr6 171833129 171833442 -10581800 - MLT1A1 LTR MaLR -55 310 5 250 280 133 7 chr6 171833779 171833929 -10581313 - MLT1I LTR MaLR -240 169 1 597 248 68 0 chr6 171835685 171835846 -10579396 + L1MCc LINE L1 1032 1203 -5220 42899 44 2 2 chr6 171835883 171841860 -10573382 - L1PA4 LINE L1 0 6155 178 1054 252 67 99 chr6 171841888 171842072 -10573170 + L1MCc LINE L1 1278 1466 -5656 2069 134 0 3 chr6 171842072 171842392 -10572850 + AluSq SINE Alu 1 319 0 1054 252 67 99 chr6 171842392 171842638 -10572604 + L1MCc LINE L1 1466 1718 -5404 2161 130 0 16 chr6 171842638 171842953 -10572289 + AluSg SINE Alu 1 310 0 1054 252 67 99 chr6 171842953 171843657 -10571585 + L1MCc LINE L1 1718 2593 -4529 2009 139 17 3 chr6 171843657 171843951 -10571291 + AluJb SINE Alu 1 298 -14 1054 252 67 99 chr6 171843951 171844051 -10571191 + L1MCc LINE L1 2593 2695 -4427 189 208 69 132 chr6 171844246 171844390 -10570852 + MER5A DNA MER1_type 16 150 -39 297 312 8 32 chr6 171845762 171845887 -10569355 - MIR SINE MIR -126 136 15 353 251 242 18 chr6 171847190 171847409 -10567833 - L2 LINE L2 -804 2510 2243 983 272 111 24 chr6 171847438 171847859 -10567383 + MLT1C LTR MaLR 3 393 -3 582 246 45 31 chr6 171848246 171848527 -10566715 - L1ME1 LINE L1 -5 6161 5880 190 324 0 42 chr6 171849834 171849905 -10565337 + MIR SINE MIR 49 116 -92 190 243 158 66 chr6 171850340 171850492 -10564750 - L3 LINE CR1 -114 1463 1298 181 239 42 84 chr6 171850459 171850530 -10564712 + L2 LINE L2 3189 3256 -16 * 324 314 51 0 chr6 171850540 171850658 -10564584 - L3 LINE CR1 -278 1299 1176 636 258 121 11 chr6 171850902 171851166 -10564076 + MLT1H LTR MaLR 52 344 -205 1275 194 38 38 chr6 171851442 171851682 -10563560 + MER33 DNA MER1_type 1 244 -2341 1974 101 60 0 chr6 171851682 171851972 -10563270 - AluSx SINE Alu 0 306 1 1275 194 38 38 chr6 171851972 171852050 -10563192 + MER33 DNA MER1_type 243 320 -4 541 329 35 53 chr6 171852105 171852431 -10562811 - L3 LINE CR1 -778 799 479 2306 119 0 0 chr6 171852431 171852742 -10562500 - AluSq SINE Alu -2 311 1 541 329 35 53 chr6 171852742 171852792 -10562450 - L3 LINE CR1 -1098 479 430 202 229 29 14 chr6 171854074 171854144 -10561098 + GA-rich Low_complexity Low_complexity 1 71 0 552 296 119 24 chr6 171854502 171854796 -10560446 + L1MC4 LINE L1 7390 7711 -331 4384 139 25 13 chr6 171854834 171855544 -10559698 - LTR62 LTR ERVK 0 719 1 2018 161 60 64 chr6 171855613 171856067 -10559175 - LTR47A LTR ERVL 0 452 1 599 289 64 27 chr6 171857255 171857584 -10557658 - LTR16C LTR ERVL 0 491 151 * 1194 165 63 16 chr6 171857573 171857828 -10557414 + MER39B LTR ERV1 370 636 -17 325 184 53 0 chr6 171858348 171858424 -10556818 - ERVL LTR ERVL -455 5309 5230 1723 191 28 11 chr6 171858453 171858808 -10556434 + MLT1A1 LTR MaLR 1 361 -4 834 188 265 16 chr6 171858808 171859053 -10556189 - MLT1C LTR MaLR -19 448 143 234 114 0 68 chr6 171859065 171859109 -10556133 - MLT1C LTR MaLR -222 168 128 234 114 0 68 chr6 171859112 171859156 -10556086 - MLT1B LTR MaLR -222 168 128 750 170 48 30 chr6 171859159 171859324 -10555918 - MLT1B LTR MaLR -222 168 1 499 315 42 13 chr6 171859952 171860190 -10555052 - ERVL LTR ERVL -1242 4522 4278 280 282 144 29 chr6 171860549 171860723 -10554519 - ERVL LTR ERVL -1896 3758 3565 325 276 15 67 chr6 171860767 171860901 -10554341 - ERVL LTR ERVL -2227 3537 3411 306 280 75 3 chr6 171861124 171861249 -10553993 - ERVL LTR ERVL -1926 3070 2976 598 168 186 0 chr6 171861250 171861363 -10553879 + AluJb SINE Alu 2 135 -177 536 113 0 0 chr6 171862465 171862545 -10552697 + MADE1 DNA Mariner 1 80 0 1110 317 122 10 chr6 171862906 171863588 -10551654 + L2 LINE L2 1063 1820 -1494 361 267 43 0 chr6 171863772 171863888 -10551354 + L2 LINE L2 1898 2018 -1296 2160 109 0 13 chr6 171864015 171864326 -10550916 - AluSc SINE Alu -2 307 1 3164 161 28 2 chr6 171864331 171864902 -10550340 - L1MA5A LINE L1 -1 6296 5711 1096 293 201 20 chr6 171864969 171865769 -10549473 + L2 LINE L2 2366 3309 -4 375 300 72 51 chr6 171865791 171866028 -10549214 + MIR SINE MIR 20 261 -1 279 309 21 10 chr6 171867141 171867238 -10548004 - MIR SINE MIR -8 254 157 219 213 88 88 chr6 171867267 171867347 -10547895 - MIR3 SINE MIR -115 93 14 225 274 108 0 chr6 171871756 171871858 -10543384 - MER81 DNA DNA -1 113 1 252 306 0 0 chr6 171872142 171872214 -10543028 + C-rich Low_complexity Low_complexity 6 77 0 2765 32 3 0 chr6 171872357 171872667 -10542575 - AluY SINE Alu 0 311 1 186 103 0 0 chr6 171872890 171872919 -10542323 + (T)n Simple_repeat Simple_repeat 1 29 0 391 313 39 33 chr6 171873614 171873796 -10541446 + MIR SINE MIR 20 202 -60 475 268 79 55 chr6 171876700 171877082 -10538160 - MER92B LTR ERV1 0 636 34 190 418 42 13 chr6 171877469 171877708 -10537534 - MIR SINE MIR 0 262 17 2011 113 0 0 chr6 171878782 171879038 -10536204 + AluSx SINE Alu 1 256 -56 24 0 0 0 chr6 171879478 171879502 -10535740 + AT_rich Low_complexity Low_complexity 1 24 0 300 222 83 19 chr6 171879628 171879736 -10535506 + MIR SINE MIR 131 245 -17 273 273 0 0 chr6 171879742 171879797 -10535445 + (CA)n Simple_repeat Simple_repeat 1 55 0 332 264 11 28 chr6 171879800 171879982 -10535260 + (CATA)n Simple_repeat Simple_repeat 1 179 0 240 224 0 0 chr6 171880021 171880088 -10535154 + (CA)n Simple_repeat Simple_repeat 1 67 0 1041 137 20 0 chr6 171881008 171881161 -10534081 + FAM SINE Alu 10 165 -20 186 259 35 0 chr6 171881556 171881614 -10533628 + L2 LINE L2 3213 3272 0 2670 71 35 16 chr6 171881633 171882001 -10533241 + THE1C LTR MaLR 1 375 0 666 165 0 0 chr6 171882102 171882205 -10533037 - FAM SINE Alu -19 166 64 678 157 0 0 chr6 171882651 171882753 -10532489 - AluS SINE Alu -210 102 1 1028 238 85 45 chr6 171882829 171883244 -10531998 - MLT1E2 LTR MaLR -189 465 1 905 363 99 34 chr6 171883406 171883512 -10531730 - L3 LINE CR1 -617 960 862 2269 127 0 6 chr6 171883512 171883826 -10531416 - AluSx SINE Alu 0 312 1 905 363 99 34 chr6 171883826 171884447 -10530795 - L3 LINE CR1 -715 862 186 2934 251 50 29 chr6 171886785 171887468 -10527774 - L1ME1 LINE L1 -5 6230 5563 315 49 0 0 chr6 171887468 171887509 -10527733 + (TG)n Simple_repeat Simple_repeat 2 42 0 2135 109 3 0 chr6 171887509 171887793 -10527449 - AluSx SINE Alu -27 285 1 2934 251 50 29 chr6 171887793 171888858 -10526384 - L1ME1 LINE L1 -671 5564 4443 401 53 0 18 chr6 171888866 171888923 -10526319 + (TA)n Simple_repeat Simple_repeat 1 56 0 400 306 38 6 chr6 171889042 171889202 -10526040 - L1ME1 LINE L1 -6197 199 35 269 333 25 50 chr6 171890049 171890247 -10524995 + L2 LINE L2 2869 3061 -211 703 200 20 7 chr6 171890701 171890851 -10524391 + MER58B DNA MER1_type 189 340 -1 329 353 7 22 chr6 171893050 171893189 -10522053 + L2 LINE L2 3173 3309 -4 25 65 0 0 chr6 171893233 171893279 -10521963 + AT_rich Low_complexity Low_complexity 1 46 0 2471 100 3 0 chr6 171893600 171893910 -10521332 + AluSx SINE Alu 1 311 -1 895 156 97 10 chr6 171895031 171895348 -10519894 - MLT1B LTR MaLR -3 387 1 340 300 110 21 chr6 171896513 171896750 -10518492 - MLT1J LTR MaLR -176 335 78 23 0 0 0 chr6 171897601 171897624 -10517618 + AT_rich Low_complexity Low_complexity 1 23 0 257 273 198 18 chr6 171898313 171898540 -10516702 + MLT1J2 LTR MaLR 13 280 -166 1232 269 39 16 chr6 171902024 171902410 -10512832 - MLT2C1 LTR ERVL -2 395 1 253 260 153 0 chr6 171902463 171902632 -10512610 - Charlie8 DNA MER1_type -996 1421 115 205 298 0 0 chr6 171902915 171902962 -10512280 + C-rich Low_complexity Low_complexity 2 48 0 448 278 49 31 chr6 171903443 171903605 -10511637 + MIR SINE MIR 31 195 -67 349 236 132 90 chr6 171904113 171904293 -10510949 - MIR SINE MIR -62 146 3 240 188 0 0 chr6 171904761 171904809 -10510433 - MER63 DNA MER1_type -35 1026 979 479 186 73 65 chr6 171904812 171904936 -10510306 - MER63 DNA MER1_type -311 751 1 1657 209 39 25 chr6 171905012 171905070 -10510172 + MLT1A1 LTR MaLR 2 58 -307 1728 154 40 30 chr6 171905070 171905369 -10509873 + AluSx SINE Alu 1 302 -10 1657 209 39 25 chr6 171905369 171905669 -10509573 + MLT1A1 LTR MaLR 58 365 0 391 289 44 69 chr6 171905685 171905844 -10509398 + MIR SINE MIR 19 173 -89 1353 226 88 14 chr6 171906000 171906363 -10508879 - MSTD LTR MaLR -6 390 1 279 344 47 6 chr6 171906826 171906997 -10508245 - MIR SINE MIR -52 210 30 3163 198 39 15 chr6 171907451 171908163 -10507079 + L1MB3 LINE L1 5445 6173 -10 406 249 231 12 chr6 171909145 171909318 -10505924 - MIR SINE MIR -6 256 46 363 304 22 29 chr6 171909333 171909471 -10505771 + MER5B DNA MER1_type 1 137 -41 291 276 86 0 chr6 171913542 171913658 -10501584 + L2 LINE L2 3187 3312 -1 441 363 28 14 chr6 171914048 171914263 -10500979 + MIR SINE MIR 28 245 -17 505 350 30 0 chr6 171914420 171914617 -10500625 - MIR SINE MIR -1 261 59 839 176 88 0 chr6 171915616 171915764 -10499478 - FRAM SINE Alu -7 169 9 1499 265 64 38 chr6 171915952 171916474 -10498768 - MER77 LTR ERV1 -4 601 87 214 358 171 17 chr6 171916539 171916609 -10498633 - L2 LINE L2 -2 3270 3212 4326 114 24 2 chr6 171916609 171917230 -10498012 - MER41B LTR ERV1 0 635 1 214 358 171 17 chr6 171917230 171917452 -10497790 - L2 LINE L2 -60 3212 2933 2928 124 17 19 chr6 171917476 171917937 -10497305 - LTR46 LTR ERV1 0 460 1 180 0 0 0 chr6 171918241 171918261 -10496981 + (A)n Simple_repeat Simple_repeat 1 20 0 3924 155 37 33 chr6 171918367 171919091 -10496151 + LTR8A LTR ERV1 1 727 0 298 297 72 0 chr6 171919629 171919740 -10495502 - L2 LINE L2 -2 3311 3193 807 119 157 0 chr6 171920605 171920739 -10494503 + MSTA LTR MaLR 1 155 -273 1769 162 7 0 chr6 171922356 171922628 -10492614 + AluJo SINE Alu 24 297 -15 268 158 70 29 chr6 171924046 171924217 -10491025 + (CA)n Simple_repeat Simple_repeat 2 179 0 256 177 61 24 chr6 171924306 171924470 -10490772 + (CA)n Simple_repeat Simple_repeat 2 171 0 237 159 50 66 chr6 171924542 171924724 -10490518 + (CA)n Simple_repeat Simple_repeat 2 180 0 1653 140 0 0 chr6 171927805 171928041 -10487201 + AluSg/x SINE Alu 75 310 0 1874 164 37 0 chr6 171928194 171928556 -10486686 + AluJb SINE Alu 1 373 0 237 264 83 0 chr6 171929294 171929366 -10485876 - MIR SINE MIR -156 106 29 4144 151 69 8 chr6 171929434 171930174 -10485068 - LTR1 LTR ERV1 0 785 1 186 189 0 0 chr6 171930566 171930603 -10484639 + (CA)n Simple_repeat Simple_repeat 2 38 0 188 324 97 62 chr6 171932563 171932708 -10482534 - L3 LINE CR1 -778 799 650 23 68 0 0 chr6 171936088 171936132 -10479110 + AT_rich Low_complexity Low_complexity 1 44 0 1901 62 0 0 chr6 171938932 171939173 -10476069 - L1PA5 LINE L1 -2 6152 5912 252 246 14 113 chr6 171939540 171939682 -10475560 + MIR SINE MIR 124 251 -11 280 334 96 14 chr6 171939818 171939969 -10475273 + MIR SINE MIR 1 183 -79 1083 156 14 32 chr6 171939969 171940187 -10475055 + MER20B DNA MER1_type 4 217 -2 280 334 96 14 chr6 171940187 171940254 -10474988 + MIR SINE MIR 183 243 -19 2874 115 29 33 chr6 171942859 171943146 -10472096 + MER1A DNA MER1_type 44 330 -2372 1793 116 0 24 chr6 171943146 171943397 -10471845 + AluSg SINE Alu 1 245 -65 2874 115 29 33 chr6 171943397 171943597 -10471645 + MER1A DNA MER1_type 330 529 0 2234 123 3 0 chr6 171943639 171943940 -10471302 + AluSx SINE Alu 1 302 -10 488 260 72 58 chr6 171943966 171944189 -10471053 - L1MEd LINE L1 -3692 2437 2212 691 244 270 28 chr6 171944645 171945141 -10470101 - L2 LINE L2 -17 3296 2714 398 289 128 5 chr6 171945177 171945326 -10469916 - HAL1 LINE L1 -985 1522 1344 1958 115 77 3 chr6 171945326 171945613 -10469629 - AluSx SINE Alu -4 308 1 398 289 128 5 chr6 171945613 171945650 -10469592 - HAL1 LINE L1 -1163 1344 1313 935 157 5 31 chr6 171945657 171945848 -10469394 + MER53 DNA DNA 2 187 -2 762 322 115 33 chr6 171945851 171946662 -10468580 - L1MEd LINE L1 -4913 1206 330 503 194 20 0 chr6 171947757 171947855 -10467387 + AluJ/FLAM SINE Alu 2 101 -211 362 125 16 0 chr6 171947861 171947925 -10467317 + AluJ/FLAM SINE Alu 37 101 -201 1496 156 25 0 chr6 171947931 171948175 -10467067 + AluJo SINE Alu 37 286 -26 204 40 0 0 chr6 171948178 171948203 -10467039 + (CA)n Simple_repeat Simple_repeat 2 26 0 2269 117 3 0 chr6 171948236 171948535 -10466707 + AluSx SINE Alu 1 300 -12 1660 202 65 0 chr6 171949137 171949478 -10465764 - MLT1A1 LTR MaLR 0 365 3 627 163 30 94 chr6 171949697 171949836 -10465406 + MER53 DNA DNA 1 125 -64 2254 122 3 0 chr6 171949836 171950140 -10465102 + AluSx SINE Alu 1 305 -7 627 163 30 94 chr6 171950140 171950202 -10465040 + MER53 DNA DNA 125 189 0 24 32 0 0 chr6 171950493 171950524 -10464718 + AT_rich Low_complexity Low_complexity 1 31 0 12888 144 24 23 chr6 171951862 171955278 -10459964 - L1P3 LINE L1 -3018 3443 6 666 226 0 0 chr6 171955286 171955423 -10459819 + Tigger7 DNA MER2_type 2344 2480 -7 328 314 26 46 chr6 171955532 171955685 -10459557 + MIR3 SINE MIR 8 157 -51 1671 292 139 28 chr6 171955740 171956677 -10458565 + L2 LINE L2 1714 2754 -560 1058 251 62 46 chr6 171956682 171957136 -10458106 + MLT1C LTR MaLR 6 466 -1 223 295 31 54 chr6 171957136 171957265 -10457977 + L2 LINE L2 2749 2874 -440 257 310 28 49 chr6 171957399 171957541 -10457701 + L2 LINE L2 3175 3313 0 227 244 0 0 chr6 171962407 171962448 -10452794 + G-rich Low_complexity Low_complexity 6 46 0 282 289 0 58 chr6 171962503 171962693 -10452549 + G-rich Low_complexity Low_complexity 1 179 0 220 296 153 10 chr6 171963067 171963165 -10452077 + MIR SINE MIR 40 151 -57 193 295 33 0 chr6 171963193 171963254 -10451988 + MIR3 SINE MIR 123 185 -23 562 215 22 0 chr6 171964529 171964664 -10450578 + MLT1B LTR MaLR 1 138 -252 249 233 78 11 chr6 171964684 171964774 -10450468 + MLT1B LTR MaLR 294 389 -1 225 0 0 0 chr6 171966283 171966308 -10448934 + (A)n Simple_repeat Simple_repeat 1 25 0 2706 278 65 48 chr6 171967748 171969130 -10446112 + L1MC3 LINE L1 6380 7785 0 2473 96 3 0 chr6 171969678 171969990 -10445252 - AluSp SINE Alu 0 313 1 2071 116 0 10 chr6 171970003 171970295 -10444947 - AluSx SINE Alu 0 312 24 2092 109 14 0 chr6 171970594 171970877 -10444365 - AluSx SINE Alu -20 292 6 207 0 0 0 chr6 171973844 171973867 -10441375 + (TG)n Simple_repeat Simple_repeat 2 24 0 195 100 0 0 chr6 171974566 171974596 -10440646 + (CA)n Simple_repeat Simple_repeat 1 30 0 445 264 43 64 chr6 171974676 171974911 -10440331 - L2 LINE L2 -3 3310 3081 210 242 0 0 chr6 171975810 171975876 -10439366 + (TA)n Simple_repeat Simple_repeat 1 66 0 2024 113 0 7 chr6 171976019 171976326 -10438916 - AluSg SINE Alu 0 305 1 1485 139 9 0 chr6 171978288 171978548 -10436694 - MER4B LTR ERV1 0 693 388 2408 143 12 82 chr6 171978996 171979377 -10435865 + MER4C LTR ERV1 1 340 -125 2358 90 7 0 chr6 171979377 171979677 -10435565 + AluSp SINE Alu 8 309 -4 2408 143 12 82 chr6 171979677 171979793 -10435449 + MER4C LTR ERV1 340 463 -2 1309 200 134 22 chr6 171980241 171980606 -10434636 - LTR44 LTR ERV1 0 519 114 1120 95 0 0 chr6 171981690 171981838 -10433404 + LTR8 LTR ERV1 544 691 0 34096 92 33 23 chr6 171981838 171982319 -10432923 + HUERS-P1 LTR ERV1 1 476 -5787 2096 136 0 16 chr6 171982319 171982627 -10432615 - AluSx SINE Alu -9 303 1 34096 92 33 23 chr6 171982627 171986752 -10428490 + HUERS-P1 LTR ERV1 476 5060 -1203 2306 105 0 29 chr6 171986752 171987067 -10428175 - AluSx SINE Alu -6 306 1 34096 92 33 23 chr6 171987067 171988284 -10426958 + HUERS-P1 LTR ERV1 5060 6263 0 3938 117 12 2 chr6 171988284 171988865 -10426377 + LTR8 LTR ERV1 1 587 -104 766 221 123 56 chr6 171988913 171989186 -10426056 - LTR37A LTR ERV1 -3 423 115 363 23 0 0 chr6 171989186 171989230 -10426012 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 766 221 123 56 chr6 171989230 171989346 -10425896 - LTR37A LTR ERV1 -311 115 8 187 235 84 76 chr6 171990130 171990249 -10424993 + MIR SINE MIR 3 122 -140 957 233 101 50 chr6 171990254 171990886 -10424356 - MER52C LTR ERV1 -669 609 46 4014 161 42 20 chr6 171991727 171992489 -10422753 + MER4E LTR ERV1 1 779 0 229 138 0 121 chr6 171992979 171993037 -10422205 + MER4D LTR ERV1 1 51 -852 * 287 272 152 8 chr6 171993015 171993140 -10422102 + LTR1B LTR ERV1 30 172 -654 406 272 26 9 chr6 171993348 171993462 -10421780 + LTR28 LTR ERV1 491 606 -414 299 209 221 38 chr6 171993547 171993705 -10421537 + MER4B LTR ERV1 8 194 -416 388 86 29 0 chr6 171994489 171994559 -10420683 + (TC)n Simple_repeat Simple_repeat 2 73 0 1506 196 0 21 chr6 171994569 171994854 -10420388 - AluJb SINE Alu -33 279 1 236 360 60 0 chr6 171996206 171996306 -10418936 + MIR SINE MIR 102 207 -55 4032 67 4 0 chr6 171997488 171998009 -10417233 - HERVL LTR ERVL -1887 3767 3245 281 160 0 0 chr6 171997998 171998048 -10417194 - HERVL LTR ERVL -2695 3069 3020 * 1936 129 9 37 chr6 171998050 171998338 -10416904 - HSMAR2 DNA Mariner -963 339 61 2414 44 10 17 chr6 171998338 171998633 -10416609 - AluY SINE Alu -16 295 3 1936 129 9 37 chr6 171998633 171998693 -10416549 - HSMAR2 DNA Mariner -1241 61 1 2044 174 19 70 chr6 171999923 172000605 -10414637 + MER4D LTR ERV1 4 903 0 2054 106 31 14 chr6 172000958 172001250 -10413992 + AluSq SINE Alu 1 297 -16 240 267 189 11 chr6 172001543 172001633 -10413609 + MIR SINE MIR 19 124 -84 297 319 64 0 chr6 172001638 172001732 -10413510 + MIR3 SINE MIR 58 157 -51 274 230 66 82 chr6 172001742 172001938 -10413304 + MLT1H LTR MaLR 1 193 -356 230 259 12 25 chr6 172002123 172002204 -10413038 + MLT1F LTR MaLR 450 529 -13 242 257 188 10 chr6 172002316 172002417 -10412825 + L2 LINE L2 3191 3309 -4 234 0 0 0 chr6 172002432 172002458 -10412784 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 54 0 0 chr6 172003546 172003583 -10411659 + AT_rich Low_complexity Low_complexity 1 37 0 367 207 29 43 chr6 172005375 172005515 -10409727 + MER31-int LTR ERV1 1787 1924 -3012 1036 147 0 7 chr6 172005515 172005665 -10409577 + AluJo SINE Alu 3 151 -161 1080 208 132 13 chr6 172006304 172006607 -10408635 + MLT1F1 LTR MaLR 72 410 -157 1219 212 117 8 chr6 172007207 172007471 -10407771 - AluJo SINE Alu -9 293 1 2280 129 89 30 chr6 172007751 172008155 -10407087 + MSTA LTR MaLR 1 428 0 1159 199 132 19 chr6 172008282 172008609 -10406633 - MLT1A1 LTR MaLR -8 459 2 1369 189 8 0 chr6 172008612 172008860 -10406382 - MLT1A1-int LTR MaLR -2 1733 1484 2469 149 36 5 chr6 172008860 172009275 -10405967 + MSTA LTR MaLR 1 428 0 5173 222 115 8 chr6 172009278 172010620 -10404622 - MLT1A1-int LTR MaLR -250 1485 1 1832 209 22 3 chr6 172010620 172010975 -10404267 - MLT1A1 LTR MaLR -3 362 1 446 252 25 124 chr6 172011770 172011884 -10403358 - L1MC4a LINE L1 -1867 5941 5868 2026 126 49 0 chr6 172011884 172012169 -10403073 - AluSx SINE Alu -13 299 1 446 252 25 124 chr6 172012169 172012328 -10402914 - L1MC4a LINE L1 -1940 5868 5695 22 56 0 0 chr6 172012693 172012729 -10402513 + AT_rich Low_complexity Low_complexity 1 36 0 25766 112 11 12 chr6 172012970 172015107 -10400135 + L1PA8 LINE L1 10 2148 -4339 2212 134 7 0 chr6 172015107 172015412 -10399830 - AluSg SINE Alu -3 307 1 25766 112 11 12 chr6 172015412 172019736 -10395506 + L1PA8 LINE L1 2148 6483 -4 1213 132 0 0 chr6 172019912 172020079 -10395163 - AluSg/x SINE Alu -14 298 132 21 0 0 0 chr6 172020106 172020127 -10395115 + AT_rich Low_complexity Low_complexity 1 21 0 545 254 106 5 chr6 172020623 172020812 -10394430 + MER20B DNA MER1_type 567 774 -9 281 310 60 0 chr6 172022126 172022226 -10393016 - MIR SINE MIR -55 207 102 610 225 0 0 chr6 172023486 172023606 -10391636 + FLAM_C SINE Alu 2 121 -22 306 73 0 0 chr6 172023606 172023647 -10391595 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1482 172 93 56 chr6 172024245 172024554 -10390688 + MER45B DNA AcHobo 630 959 -622 2320 86 0 29 chr6 172024554 172024867 -10390375 - AluY SINE Alu -7 304 1 1482 172 93 56 chr6 172024867 172024953 -10390289 + MER45B DNA AcHobo 959 1040 0 210 37 0 0 chr6 172024999 172025026 -10390216 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 399 323 101 15 chr6 172025070 172025268 -10389974 + MIR SINE MIR 24 238 -24 734 256 147 25 chr6 172025498 172025865 -10389377 + MLT1C LTR MaLR 2 413 -54 226 281 185 0 chr6 172025988 172026134 -10389108 + MER5A DNA MER1_type 5 177 -12 208 305 49 0 chr6 172026212 172026294 -10388948 + MER5A DNA MER1_type 98 183 -6 308 294 165 16 chr6 172026312 172026506 -10388736 - MER45B DNA AcHobo -461 579 357 1518 215 51 64 chr6 172026565 172027131 -10388111 - MER34B LTR ERV1 -2 563 19 662 245 93 14 chr6 172027156 172027372 -10387870 - MER45B DNA AcHobo -748 292 60 2378 132 24 69 chr6 172027372 172027991 -10387251 - MER4E LTR ERV1 0 779 1 3869 158 39 16 chr6 172028478 172029239 -10386003 - MER4E LTR ERV1 0 779 1 298 292 22 0 chr6 172029592 172029681 -10385561 + MIR SINE MIR 50 140 -122 2981 161 18 38 chr6 172030830 172031437 -10383805 - L1MA5A LINE L1 -182 6115 5521 281 333 37 9 chr6 172031439 172031547 -10383695 - MIR SINE MIR -89 173 63 316 171 24 65 chr6 172032531 172032701 -10382541 - HERV17 LTR ERV1 -7753 873 711 318 228 0 0 chr6 172032706 172032833 -10382409 + CT-rich Low_complexity Low_complexity 2 128 0 895 212 115 54 chr6 172034091 172034483 -10380759 + LTR37A LTR ERV1 8 423 -3 280 270 0 0 chr6 172035647 172035710 -10379532 + LTR44 LTR ERV1 114 176 -343 516 277 147 10 chr6 172036985 172037285 -10377957 - MER92C LTR ERV1 0 554 214 4579 171 37 5 chr6 172037599 172038474 -10376768 - MER4D LTR ERV1 0 903 1 222 37 0 0 chr6 172040887 172040914 -10374328 + (TC)n Simple_repeat Simple_repeat 2 28 0 301 200 12 75 chr6 172040915 172040995 -10374247 - L1MC4 LINE L1 -1350 6692 6618 306 268 21 0 chr6 172040998 172041095 -10374147 + (TA)n Simple_repeat Simple_repeat 2 100 0 2491 71 3 3 chr6 172041648 172041957 -10373285 + AluSx SINE Alu 1 309 -3 361 292 32 51 chr6 172042329 172042545 -10372697 + L2 LINE L2 3084 3295 -18 444 147 0 0 chr6 172042637 172042712 -10372530 + (TG)n Simple_repeat Simple_repeat 1 75 0 351 0 0 0 chr6 172043402 172043441 -10371801 + (CA)n Simple_repeat Simple_repeat 2 40 0 295 347 181 0 chr6 172044965 172045164 -10370078 - MIR SINE MIR -26 236 2 695 218 6 13 chr6 172045522 172045678 -10369564 - MER3 DNA MER1_type -5 204 50 198 299 26 0 chr6 172048939 172049016 -10366226 + L2 LINE L2 3235 3313 0 304 330 0 6 chr6 172050337 172050513 -10364729 + CT-rich Low_complexity Low_complexity 2 176 0 * 377 0 57 208 chr6 172050401 172050667 -10364575 + (CCTCG)n Simple_repeat Simple_repeat 1 225 0 * 400 320 0 0 chr6 172050536 172050711 -10364531 + CT-rich Low_complexity Low_complexity 2 176 0 225 279 48 77 chr6 172052459 172052563 -10362679 - MIR SINE MIR -92 116 16 311 229 36 0 chr6 172053307 172053390 -10361852 - Charlie5 DNA MER1_type -2522 90 5 26 0 0 0 chr6 172053758 172053784 -10361458 + AT_rich Low_complexity Low_complexity 1 26 0 2389 90 0 13 chr6 172053784 172054083 -10361159 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr6 172054084 172054105 -10361137 + (CA)n Simple_repeat Simple_repeat 2 22 0 312 200 143 0 chr6 172054105 172054175 -10361067 - L1MC4 LINE L1 -1350 6692 6613 211 353 78 45 chr6 172054428 172054697 -10360545 - L2 LINE L2 -10 3262 2985 934 216 9 52 chr6 172055845 172056077 -10359165 - MER58A DNA MER1_type -2 222 1 1184 236 15 0 chr6 172057724 172057987 -10357255 + Tigger7 DNA MER2_type 1 267 -2220 334 253 13 0 chr6 172057985 172058060 -10357182 + Tigger7 DNA MER2_type 2389 2464 -23 * 330 287 74 55 chr6 172058161 172058471 -10356771 - L1MC4 LINE L1 -1807 6001 5686 2554 80 3 0 chr6 172059510 172059821 -10355421 - AluSp SINE Alu 0 313 2 207 323 118 0 chr6 172061665 172061758 -10353484 - MIR SINE MIR -79 183 80 181 293 17 0 chr6 172063852 172063910 -10351332 - L2 LINE L2 -2666 648 590 710 102 0 0 chr6 172064049 172064147 -10351095 + AluSg/x SINE Alu 154 251 -61 2066 144 0 0 chr6 172065551 172065843 -10349399 + AluSx SINE Alu 1 292 -20 1929 251 39 59 chr6 172066683 172067519 -10347723 - L1MD3 LINE L1 0 7995 6949 420 270 51 7 chr6 172067534 172067671 -10347571 - L1MD3 LINE L1 -1437 6558 6416 456 153 12 24 chr6 172069505 172069590 -10345652 + MER4A LTR ERV1 15 98 -566 1597 128 151 125 chr6 172069590 172069982 -10345260 + MER4A LTR ERV1 261 662 -2 195 295 33 0 chr6 172070734 172070795 -10344447 - MIR3 SINE MIR -23 185 123 213 296 153 10 chr6 172070823 172070921 -10344321 - MIR SINE MIR -57 151 40 441 284 3 40 chr6 172071316 172071553 -10343689 + C-rich Low_complexity Low_complexity 1 228 0 203 143 0 24 chr6 172071623 172071665 -10343577 + (TTCCC)n Simple_repeat Simple_repeat 1 41 0 204 194 0 0 chr6 172072673 172072709 -10342533 + (CCCTG)n Simple_repeat Simple_repeat 5 40 0 248 325 24 56 chr6 172076558 172076684 -10338558 - L2 LINE L2 0 3313 3192 240 279 31 54 chr6 172076833 172076962 -10338280 - L2 LINE L2 -440 2874 2749 1112 252 69 49 chr6 172076962 172077414 -10337828 - MLT1C LTR MaLR -1 466 6 298 224 13 53 chr6 172077419 172077495 -10337747 - L2 LINE L2 -560 2754 2682 241 262 33 0 chr6 172077503 172077564 -10337678 - L1ME3A LINE L1 -73 6097 6035 1779 139 31 10 chr6 172079445 172079739 -10335503 - AluSc SINE Alu -9 300 1 21 0 0 0 chr6 172081230 172081251 -10333991 + AT_rich Low_complexity Low_complexity 1 21 0 1530 107 27 4 chr6 172081572 172081797 -10333445 - MER30 DNA MER1_type 0 230 1 594 233 26 42 chr6 172081805 172081998 -10333244 - MER4C LTR ERV1 0 465 276 2025 138 33 56 chr6 172082017 172082485 -10332757 - MER4A LTR ERV1 -247 417 1 2021 125 6 10 chr6 172085228 172085540 -10329702 + AluSq SINE Alu 1 311 -2 2685 158 8 20 chr6 172086072 172086566 -10328676 - L1MA5A LINE L1 -3 6294 5805 2628 134 58 0 chr6 172086566 172086976 -10328266 + MER57B LTR ERV1 1 434 0 2685 158 8 20 chr6 172086976 172086988 -10328254 - L1MA5A LINE L1 -492 5805 5794 1620 192 44 54 chr6 172086988 172087395 -10327847 - MER57A LTR ERV1 0 403 1 17703 23 0 1 chr6 172087395 172089461 -10325781 - L1PA2 LINE L1 -1495 4651 2587 8015 17 0 0 chr6 172089461 172090936 -10324306 + L1PA2 LINE L1 4680 6154 -1 1242 217 21 7 chr6 172090976 172091257 -10323985 - L1MA5A LINE L1 -515 5782 5498 27 73 0 0 chr6 172091392 172091447 -10323795 + AT_rich Low_complexity Low_complexity 1 55 0 225 224 52 0 chr6 172092644 172092702 -10322540 - MER103 DNA DNA -102 64 4 423 131 62 31 chr6 172092711 172093011 -10322231 + (CA)n Simple_repeat Simple_repeat 1 309 0 274 130 86 19 chr6 172093040 172093202 -10322040 + (CA)n Simple_repeat Simple_repeat 2 174 0 264 144 75 7 chr6 172093285 172093431 -10321811 + (CA)n Simple_repeat Simple_repeat 2 157 0 767 189 4 8 chr6 172093777 172094032 -10321210 + CT-rich Low_complexity Low_complexity 1 254 0 1347 171 128 15 chr6 172097302 172097629 -10317613 + L1MB5 LINE L1 5811 6174 0 780 159 8 23 chr6 172097636 172097768 -10317474 + FLAM_C SINE Alu 2 131 -2 24 0 0 0 chr6 172097768 172097792 -10317450 + AT_rich Low_complexity Low_complexity 1 24 0 336 288 33 26 chr6 172098027 172098180 -10317062 - L1M3a LINE L1 -5256 699 546 346 383 6 6 chr6 172098510 172098677 -10316565 - L1M3a LINE L1 -5503 452 286 * 13409 179 63 18 chr6 172098674 172100441 -10314801 + L1MA7 LINE L1 2265 3951 -2340 180 0 0 0 chr6 172100441 172100461 -10314781 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 13409 179 63 18 chr6 172100461 172102320 -10312922 + L1MA7 LINE L1 3951 6060 -231 24 0 0 0 chr6 172103682 172103706 -10311536 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr6 172103746 172103775 -10311467 + AT_rich Low_complexity Low_complexity 1 29 0 1683 100 48 0 chr6 172103775 172104024 -10311218 - AluSc SINE Alu -21 288 28 1226 146 9 14 chr6 172104026 172104246 -10310996 + L1MA7 LINE L1 6050 6268 -23 1080 116 18 0 chr6 172104423 172104587 -10310655 + AluSg/x SINE Alu 138 304 -8 512 263 161 18 chr6 172105329 172105614 -10309628 + L1MDa LINE L1 9 334 -6206 15087 124 41 11 chr6 172106591 172107696 -10307546 + Tigger1 DNA MER2_type 1 1072 -1346 1823 103 0 35 chr6 172107696 172107978 -10307264 + AluSp SINE Alu 42 313 0 15087 124 41 11 chr6 172107978 172109220 -10306022 + Tigger1 DNA MER2_type 1072 2418 0 988 163 155 17 chr6 172109899 172110138 -10305104 - ORSL DNA AcHobo 0 275 4 21 0 0 0 chr6 172110417 172110438 -10304804 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 172114167 172114195 -10301047 + AT_rich Low_complexity Low_complexity 1 28 0 2108 94 0 7 chr6 172114475 172114774 -10300468 - AluY SINE Alu -3 308 12 321 194 0 0 chr6 172114809 172114871 -10300371 - MER53 DNA DNA 0 189 128 1724 120 0 0 chr6 172114871 172115121 -10300121 - AluSx SINE Alu -4 308 59 2002 78 6 59 chr6 172315121 172315441 -10099801 - PABL_B LTR ERV1 -364 303 1 514 278 11 28 chr6 172316270 172316450 -10098792 - L2 LINE L2 -4 3309 3133 883 126 96 0 chr6 172317992 172318172 -10097070 - AluSg/x SINE Alu 0 329 137 249 250 76 28 chr6 172318538 172318682 -10096560 + L1MB3 LINE L1 5298 5448 -673 188 111 28 0 chr6 172318682 172318718 -10096524 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 559 119 9 9 chr6 172318717 172318826 -10096416 + (GA)n Simple_repeat Simple_repeat 1 109 0 1986 144 21 45 chr6 172319762 172320136 -10095106 - MLT1A1 LTR MaLR 0 365 1 3852 134 13 24 chr6 172320686 172321358 -10093884 + L1MB3 LINE L1 5517 6181 -2 279 378 10 0 chr6 172321461 172321559 -10093683 + L2 LINE L2 2979 3077 -195 308 313 92 46 chr6 172321671 172321802 -10093440 + L2 LINE L2 3172 3308 -5 2244 78 3 7 chr6 172322201 172322516 -10092726 - AluY SINE Alu 0 314 1 2357 84 0 0 chr6 172322848 172323146 -10092096 - AluY SINE Alu -13 298 1 1178 87 1 1 chr6 172323713 172323891 -10091351 - L1PA4 LINE L1 -4236 2626 2407 * 27114 37 3 0 chr6 172323883 172328109 -10087133 + L1PA4 LINE L1 2633 6868 -3 361 277 85 0 chr6 172328360 172328584 -10086658 + L1ME1 LINE L1 3077 3319 -2827 257 309 48 5 chr6 172328654 172328842 -10086400 + L1ME1 LINE L1 3341 3536 -2610 2447 49 29 35 chr6 172328918 172329263 -10085979 - L1PA4 LINE L1 -3 6152 5810 414 229 19 9 chr6 172329310 172329415 -10085827 - LTR16B LTR ERVL 0 464 359 281 275 33 0 chr6 172329522 172329613 -10085629 - LTR16B LTR ERVL -284 180 87 776 300 99 14 chr6 172329710 172330571 -10084671 + L1ME1 LINE L1 3685 4686 -1460 226 158 0 35 chr6 172330572 172330629 -10084613 + GA-rich Low_complexity Low_complexity 3 57 0 263 318 93 12 chr6 172330825 172331083 -10084159 + L1ME1 LINE L1 4972 5250 -896 1970 129 7 20 chr6 172331103 172331405 -10083837 - AluSx SINE Alu -14 298 1 13792 196 32 42 chr6 172331424 172335866 -10079376 + L1MA5A LINE L1 32 4517 -2422 2064 156 0 6 chr6 172335866 172336180 -10079062 - AluSx SINE Alu 0 312 1 13792 196 32 42 chr6 172336180 172337679 -10077563 + L1MA5A LINE L1 4517 6151 -788 2042 96 58 10 chr6 172337679 172337971 -10077271 - AluSc SINE Alu -3 306 1 13792 196 32 42 chr6 172337971 172338749 -10076493 + L1MA5A LINE L1 6151 6935 -4 859 286 29 53 chr6 172338750 172339260 -10075982 + L1ME1 LINE L1 5282 5779 -391 764 239 79 59 chr6 172339715 172340070 -10075172 + L1ME1 LINE L1 5800 6161 -5 2669 125 29 2 chr6 172340497 172340912 -10074330 - MSTA LTR MaLR -2 426 1 199 368 56 50 chr6 172341295 172341673 -10073569 + L2 LINE L2 2851 3230 -42 1000 176 9 77 chr6 172344116 172344349 -10070893 - MER58A DNA MER1_type -2 222 6 189 0 0 0 chr6 172344538 172344559 -10070683 + (T)n Simple_repeat Simple_repeat 1 21 0 1470 230 203 4 chr6 172344595 172345148 -10070094 - L1MD1 LINE L1 -15 6227 5565 640 286 75 21 chr6 172345406 172345794 -10069448 - L1ME LINE L1 -332 5789 5381 2462 84 0 3 chr6 172346140 172346448 -10068794 - AluY SINE Alu -4 307 1 386 343 43 15 chr6 172346509 172346836 -10068406 - ERVL LTR ERVL -4616 1148 813 2202 135 34 8 chr6 172346922 172347277 -10067965 - THE1B LTR MaLR 0 364 1 10090 102 13 38 chr6 172347277 172348879 -10066363 - THE1B-int LTR MaLR 0 1580 19 2405 131 78 5 chr6 172348885 172349306 -10065936 + MER4E LTR ERV1 1 452 -327 36047 85 8 7 chr6 172349307 172355450 -10059792 - L1PA6 LINE L1 0 6154 11 2417 75 3 39 chr6 172355457 172355816 -10059426 + MER4E LTR ERV1 421 766 0 2131 138 33 25 chr6 172355831 172356192 -10059050 - THE1B LTR MaLR 0 364 1 237 239 65 22 chr6 172356357 172356449 -10058793 - LTR33A LTR ERVL -364 159 64 1577 260 101 24 chr6 172356510 172357272 -10057970 + HAL1 LINE L1 1681 2501 -6 219 146 0 0 chr6 172358870 172358911 -10056331 + (CAA)n Simple_repeat Simple_repeat 1 41 0 555 257 0 0 chr6 172358960 172359131 -10056111 + (CAG)n Simple_repeat Simple_repeat 1 171 0 748 243 2 2 chr6 172359194 172359772 -10055470 + (CAG)n Simple_repeat Simple_repeat 1 578 0 470 240 0 0 chr6 172359794 172359940 -10055302 + (CAG)n Simple_repeat Simple_repeat 1 146 0 789 208 0 0 chr6 172359951 172360129 -10055113 + (CAG)n Simple_repeat Simple_repeat 2 179 0 762 229 0 0 chr6 172360157 172360450 -10054792 + (CAG)n Simple_repeat Simple_repeat 1 293 0 798 202 0 0 chr6 172360476 172360654 -10054588 + (CAG)n Simple_repeat Simple_repeat 2 179 0 768 190 0 0 chr6 172360683 172360846 -10054396 + (CAG)n Simple_repeat Simple_repeat 2 164 0 447 253 0 0 chr6 172360863 172361017 -10054225 + (CAG)n Simple_repeat Simple_repeat 2 155 0 849 190 0 0 chr6 172361039 172361218 -10054024 + (CAG)n Simple_repeat Simple_repeat 1 179 0 280 211 0 0 chr6 172361218 172361270 -10053972 + (CAA)n Simple_repeat Simple_repeat 3 54 0 744 214 0 0 chr6 172361271 172361449 -10053793 + (CAG)n Simple_repeat Simple_repeat 2 179 0 390 242 0 0 chr6 172361460 172361584 -10053658 + (CAG)n Simple_repeat Simple_repeat 2 125 0 753 228 0 0 chr6 172361606 172361875 -10053367 + (CAG)n Simple_repeat Simple_repeat 1 269 0 594 269 0 6 chr6 172361903 172362422 -10052820 + (CAG)n Simple_repeat Simple_repeat 1 516 0 537 234 0 4 chr6 172362464 172362712 -10052530 + (CAG)n Simple_repeat Simple_repeat 1 246 0 322 280 9 9 chr6 172362714 172362821 -10052421 + (CAA)n Simple_repeat Simple_repeat 2 108 0 531 268 0 0 chr6 172362821 172363000 -10052242 + (CAG)n Simple_repeat Simple_repeat 1 179 0 615 229 0 0 chr6 172363046 172363216 -10052026 + (CAG)n Simple_repeat Simple_repeat 1 170 0 579 251 0 0 chr6 172363224 172363399 -10051843 + (CAA)n Simple_repeat Simple_repeat 2 176 0 528 309 6 44 chr6 172363503 172363684 -10051558 + MIR SINE MIR 25 198 -64 14057 136 25 6 chr6 172363684 172366052 -10049190 - Tigger1 DNA MER2_type 0 2418 8 212 226 57 0 chr6 172366102 172366155 -10049087 - MIR SINE MIR -107 155 100 331 244 185 0 chr6 172366279 172366414 -10048828 - MIR SINE MIR -89 173 14 359 277 0 40 chr6 172366492 172366593 -10048649 - L2 LINE L2 -3 3269 3173 521 252 128 62 chr6 172366669 172366975 -10048267 - MER102a DNA MER1_type -4 326 1 1274 270 147 36 chr6 172367208 172367714 -10047528 - L1MC4a LINE L1 -744 5402 5476 2139 112 0 22 chr6 172367714 172368027 -10047215 - AluSg SINE Alu -4 306 1 1274 270 147 36 chr6 172368027 172368675 -10046567 - L1MC4a LINE L1 -669 5477 4903 217 336 47 23 chr6 172369529 172369657 -10045585 + MIR SINE MIR 21 151 -111 2392 136 17 25 chr6 172369660 172369789 -10045453 + MER57A LTR ERV1 1 129 -274 4824 99 33 0 chr6 172369789 172370458 -10044784 + LTR8 LTR ERV1 1 691 0 2392 136 17 25 chr6 172370458 172370734 -10044508 + MER57A LTR ERV1 129 403 0 4233 158 52 65 chr6 172370749 172371663 -10043579 + MER4D LTR ERV1 1 903 0 3709 122 13 6 chr6 172371663 172372213 -10043029 + MER41A LTR ERV1 1 554 0 2852 135 16 16 chr6 172372213 172372644 -10042598 + MER41A-int LTR ERV1 1 431 -5515 2166 93 17 9 chr6 172372652 172373045 -10042197 + LTR7 LTR ERV1 1 442 -8 15318 173 69 81 chr6 172373053 172377925 -10037317 + HERVH LTR ERV1 1 5016 -2697 2639 106 43 24 chr6 172377928 172378351 -10036891 + HERVH LTR ERV1 7283 7713 0 2102 100 21 9 chr6 172378351 172378748 -10036494 + LTR7 LTR ERV1 1 448 -2 1354 106 46 138 chr6 172378749 172379032 -10036210 + MER41A-int LTR ERV1 434 690 -5256 2299 141 39 6 chr6 172379033 172379388 -10035854 + MER41A-int LTR ERV1 2005 2371 -5166 545 115 81 0 chr6 172379385 172379472 -10035770 + MER41A-int LTR ERV1 1898 1991 -3955 * 4140 134 104 6 chr6 172379480 172380190 -10035052 + MER41A-int LTR ERV1 2167 2946 -3000 * 12851 94 23 19 chr6 172380177 172382442 -10032800 + MER41A-int LTR ERV1 2856 5945 -1 3997 100 9 4 chr6 172382443 172382992 -10032250 + MER41A LTR ERV1 3 554 0 349 174 14 0 chr6 172382995 172383064 -10032178 + MIR SINE MIR 166 235 -27 4132 133 8 14 chr6 172383655 172384293 -10030949 + MER41B LTR ERV1 1 634 -1 3579 135 86 21 chr6 172384798 172385452 -10029790 - LTR34 LTR ERV1 0 699 4 883 86 0 0 chr6 172386469 172386585 -10028657 + L1PB1 LINE L1 6036 6151 0 21 0 0 0 chr6 172386644 172386665 -10028577 + AT_rich Low_complexity Low_complexity 1 21 0 1856 145 12 22 chr6 172387375 172387699 -10027543 - L1MC1 LINE L1 0 6333 6013 1824 165 27 0 chr6 172388851 172389148 -10026094 - AluSx SINE Alu -7 305 1 641 213 62 12 chr6 172389838 172389998 -10025244 + MER5B DNA MER1_type 1 168 -10 2185 128 3 0 chr6 172390465 172390633 -10024609 - AluSx SINE Alu -7 305 134 2315 115 0 0 chr6 172390633 172390937 -10024305 - AluSg SINE Alu -6 304 1 2185 128 3 0 chr6 172390937 172391072 -10024170 - AluSx SINE Alu -178 134 1 2259 116 0 0 chr6 172391236 172391528 -10023714 + AluSx SINE Alu 1 292 -20 1166 215 95 34 chr6 172392853 172393202 -10022040 + MLT1A2 LTR MaLR 5 374 0 427 265 136 12 chr6 172393444 172393606 -10021636 + MER117 DNA MER1_type 1 182 -15 239 311 14 0 chr6 172394632 172394706 -10020536 - MER63B DNA MER1_type -9 425 351 239 305 185 0 chr6 172396125 172396276 -10018966 + MIR SINE MIR 47 225 -37 851 60 0 26 chr6 172396737 172396853 -10018389 - L1PA10 LINE L1 -3 6165 6053 414 211 163 72 chr6 172397413 172397579 -10017663 + MER5A DNA MER1_type 9 189 0 287 284 27 40 chr6 172397579 172397714 -10017528 + MIR SINE MIR 104 236 -26 2574 144 11 103 chr6 172397794 172398329 -10016913 - MER66B LTR ERV1 0 486 1 1613 243 70 0 chr6 172398366 172398749 -10016493 - MER63B DNA MER1_type -24 412 3 2337 115 0 0 chr6 172398767 172399071 -10016171 + AluSx SINE Alu 1 304 -8 239 232 40 0 chr6 172400316 172400415 -10014827 + (TA)n Simple_repeat Simple_repeat 2 104 0 208 258 65 0 chr6 172400456 172400518 -10014724 + L2 LINE L2 3203 3268 -4 1023 152 12 0 chr6 172401669 172401833 -10013409 - FRAM SINE Alu 0 166 1 320 304 20 40 chr6 172402122 172402270 -10012972 + MIR3 SINE MIR 9 153 -55 2676 157 132 23 chr6 172404341 172404934 -10010308 + MER39 LTR ERV1 1 707 0 419 316 152 15 chr6 172406841 172407177 -10008065 - L3 LINE CR1 -3 1574 1193 946 257 63 47 chr6 172407942 172408404 -10006838 + MER39 LTR ERV1 5 684 -23 778 152 8 23 chr6 172408465 172408597 -10006645 + FLAM_C SINE Alu 1 130 -3 399 263 32 58 chr6 172409271 172409461 -10005781 + L1MC4 LINE L1 6823 7007 -1035 1944 144 0 18 chr6 172409472 172409757 -10005485 + AluSx SINE Alu 1 280 -32 217 0 61 0 chr6 172409759 172409792 -10005450 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 347 234 47 9 chr6 172410055 172410162 -10005080 + L1MC5 LINE L1 7302 7412 -549 300 256 36 54 chr6 172410291 172410459 -10004783 + L1MC5 LINE L1 7613 7777 -184 4663 217 27 2 chr6 172410709 172411636 -10003606 + MER21B-int LTR ERV1 2 951 -3240 228 35 0 0 chr6 172411648 172411677 -10003565 + (GA)n Simple_repeat Simple_repeat 2 30 0 2108 108 0 0 chr6 172411678 172411955 -10003287 - AluSx SINE Alu -35 277 1 5273 181 30 11 chr6 172411958 172412947 -10002295 + MER21B-int LTR ERV1 1817 2824 -1367 5897 171 35 18 chr6 172412951 172414066 -10001176 + MER21B-int LTR ERV1 3003 4136 -55 1757 230 107 77 chr6 172414160 172414951 -10000291 + MER21B LTR ERV1 1 926 -5 1764 209 81 7 chr6 172415112 172415534 -9999708 + MLT1C LTR MaLR 15 467 0 1862 198 37 3 chr6 172415675 172416028 -9999214 + MLT1A1 LTR MaLR 1 365 0 186 133 0 0 chr6 172416226 172416256 -9998986 + (CTCTG)n Simple_repeat Simple_repeat 4 33 0 712 214 20 46 chr6 172416881 172417077 -9998165 - MER89 LTR ERV1 -82 477 287 349 143 0 0 chr6 172417087 172417143 -9998099 - MER89 LTR ERV1 -502 57 2 447 309 15 29 chr6 172417491 172417763 -9997479 - L1MEd LINE L1 -4918 1201 934 185 259 0 69 chr6 172418004 172418062 -9997180 - L3 LINE CR1 -105 1472 1419 461 279 58 35 chr6 172418251 172418423 -9996819 - L2 LINE L2 -10 3303 3128 1414 145 0 9 chr6 172418991 172419212 -9996030 + AluJb SINE Alu 88 306 -6 710 183 0 8 chr6 172419348 172419474 -9995768 - MER20 DNA MER1_type 0 219 95 273 339 48 8 chr6 172419500 172419624 -9995618 - MIR3 SINE MIR -42 166 38 599 296 10 5 chr6 172421833 172422032 -9993210 + MER3 DNA MER1_type 10 209 0 183 80 0 0 chr6 172422671 172422696 -9992546 + (T)n Simple_repeat Simple_repeat 1 25 0 663 280 167 20 chr6 172423318 172424095 -9991147 + L2 LINE L2 2404 3287 -26 2996 215 60 80 chr6 172424316 172425241 -9990001 - L1ME1 LINE L1 -6 6229 5323 8781 237 54 55 chr6 172425245 172425683 -9989559 - L1ME1 LINE L1 -1067 5148 4711 2496 90 0 0 chr6 172425683 172425994 -9989248 - AluY SINE Alu 0 311 1 8781 237 54 55 chr6 172425994 172429055 -9986187 - L1ME1 LINE L1 -1504 4711 1695 1206 176 23 32 chr6 172429055 172429276 -9985966 + MER20 DNA MER1_type 1 219 0 8781 237 54 55 chr6 172429276 172430934 -9984308 - L1ME1 LINE L1 -4520 1695 37 2718 95 122 5 chr6 172431375 172431776 -9983466 - LTR7 LTR ERV1 -2 448 1 2398 100 48 13 chr6 172431776 172432155 -9983087 - HERVH LTR ERV1 0 7713 7322 1398 129 18 5 chr6 172432153 172432370 -9982872 - HERVH LTR ERV1 -1894 5819 5600 * 4484 143 0 3 chr6 172432374 172433045 -9982197 - HERVH LTR ERV1 -2567 5146 4478 3503 98 8 6 chr6 172433037 172433537 -9981705 - HERVH LTR ERV1 -3721 3992 3492 * 893 137 20 0 chr6 172433529 172433675 -9981567 - HERVH LTR ERV1 -4425 3288 3140 * 21423 79 13 21 chr6 172433661 172436675 -9978567 - HERVH LTR ERV1 -4721 2992 1 2699 94 119 5 chr6 172436677 172437079 -9978163 - LTR7 LTR ERV1 -2 448 1 24 53 0 0 chr6 172438020 172438058 -9977184 + AT_rich Low_complexity Low_complexity 1 38 0 2231 88 7 10 chr6 172439283 172439579 -9975663 - AluSq SINE Alu -13 300 6 2390 63 13 10 chr6 172439680 172439982 -9975260 + AluY SINE Alu 1 303 -8 262 310 44 18 chr6 172441217 172441330 -9973912 + L2 LINE L2 3157 3272 0 3581 146 43 49 chr6 172441415 172442113 -9973129 - L1MA9 LINE L1 0 6312 5619 270 0 0 0 chr6 172443930 172443960 -9971282 + (CA)n Simple_repeat Simple_repeat 2 31 0 564 242 0 0 chr6 172443984 172444137 -9971105 + (CA)n Simple_repeat Simple_repeat 2 154 0 273 267 0 0 chr6 172444158 172444263 -9970979 + (CA)n Simple_repeat Simple_repeat 1 105 0 253 173 0 0 chr6 172444263 172444315 -9970927 - MER4-int LTR ERV1 -5436 1162 1111 205 227 34 0 chr6 172444315 172444403 -9970839 + (CATA)n Simple_repeat Simple_repeat 4 94 0 264 73 0 147 chr6 172444407 172444475 -9970767 - MER4-int LTR ERV1 -5430 1168 1111 461 258 6 0 chr6 172444482 172444645 -9970597 + (CA)n Simple_repeat Simple_repeat 1 164 0 1015 126 59 77 chr6 172444654 172444876 -9970366 + MLT1B LTR MaLR 13 230 -160 230 237 62 38 chr6 172444894 172445020 -9970222 - L1ME LINE L1 -410 5756 5616 223 301 36 0 chr6 172447213 172447296 -9967946 + MIR SINE MIR 37 122 -86 2858 83 14 8 chr6 172447804 172448166 -9967076 - THE1B LTR MaLR 0 364 1 9347 102 46 108 chr6 172448166 172449214 -9966028 - THE1B-int LTR MaLR 0 1580 500 827 145 277 0 chr6 172449214 172449380 -9965862 - AluSq SINE Alu -14 299 88 9347 102 46 108 chr6 172449380 172449851 -9965391 - THE1B-int LTR MaLR -1080 500 1 2718 118 6 3 chr6 172449851 172450214 -9965028 - THE1B LTR MaLR 0 364 1 1394 172 50 46 chr6 172450342 172450472 -9964770 + AluJo SINE Alu 1 129 -183 213 39 0 0 chr6 172450472 172450498 -9964744 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 1394 172 50 46 chr6 172450498 172450669 -9964573 + AluJo SINE Alu 129 303 -9 188 275 110 11 chr6 172451068 172451159 -9964083 - MIR3 SINE MIR 0 208 109 247 343 36 29 chr6 172452002 172452142 -9963100 - MIR3 SINE MIR -61 147 7 9093 183 97 69 chr6 172452198 172453392 -9961850 - L1MA8 LINE L1 -1 7250 6091 2366 69 3 38 chr6 172453392 172453712 -9961530 + AluY SINE Alu 1 309 -2 9093 183 97 69 chr6 172453712 172455779 -9959463 - L1MA8 LINE L1 -1160 6091 4083 1972 129 40 10 chr6 172455779 172456082 -9959160 - AluSx SINE Alu 0 312 1 9093 183 97 69 chr6 172456082 172456097 -9959145 - L1MA8 LINE L1 -3168 4083 4070 1500 193 7 72 chr6 172456097 172456403 -9958839 - AluJo SINE Alu -16 286 1 9093 183 97 69 chr6 172456403 172456819 -9958423 - L1MA8 LINE L1 -3181 4070 3667 1281 179 21 13 chr6 172456819 172457053 -9958189 - MER46A DNA MER2_type 0 236 1 9093 183 97 69 chr6 172457053 172457207 -9958035 - L1MA8 LINE L1 -3584 3667 3519 2207 107 0 0 chr6 172457207 172457496 -9957746 - AluSc SINE Alu -16 293 5 9093 183 97 69 chr6 172457496 172459468 -9955774 - L1MA8 LINE L1 -3732 3519 1311 2041 292 75 51 chr6 172459712 172461162 -9954080 + L1MEc LINE L1 633 2116 -4280 1394 276 58 19 chr6 172461164 172461595 -9953647 + LTR16A LTR ERVL 3 450 0 438 282 27 9 chr6 172461595 172461705 -9953537 + HERV16 LTR ERVL 1 112 -4884 643 231 21 7 chr6 172461908 172462051 -9953191 + HERV16 LTR ERVL 379 523 -4473 1421 183 58 19 chr6 172462124 172462436 -9952806 - L1MB7 LINE L1 -31 6651 6328 * 3262 235 40 5 chr6 172462434 172463214 -9952028 - L1MB7 LINE L1 -1074 5570 4764 1168 277 102 11 chr6 172463230 172463663 -9951579 - L1MB7 LINE L1 -6060 482 11 1777 263 73 66 chr6 172463681 172464000 -9951242 + HERV16 LTR ERVL 590 905 -4091 1974 154 51 9 chr6 172464000 172464350 -9950892 - L1MA6 LINE L1 0 6300 5936 1777 263 73 66 chr6 172464350 172464714 -9950528 + HERV16 LTR ERVL 905 1278 -3718 3105 304 67 50 chr6 172464789 172464858 -9950384 + HERV16 LTR ERVL 1592 1658 -3338 188 0 0 69 chr6 172464858 172464887 -9950355 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3105 304 67 50 chr6 172464887 172466168 -9949074 + HERV16 LTR ERVL 1658 2966 -2030 586 339 102 21 chr6 172466190 172466573 -9948669 + HERV16 LTR ERVL 3084 3497 -2267 350 306 110 20 chr6 172466945 172467190 -9948052 + HERV16 LTR ERVL 4173 4439 -1325 677 257 23 6 chr6 172467203 172467378 -9947864 - MER58D DNA MER1_type -197 189 12 618 205 99 35 chr6 172467419 172467590 -9947652 - MLT1J LTR MaLR -234 277 96 1934 140 196 0 chr6 172468313 172468671 -9946571 + MSTA LTR MaLR 1 428 0 1512 231 29 52 chr6 172468725 172468864 -9946378 - L1MC4 LINE L1 0 8042 7901 180 111 0 0 chr6 172468864 172468891 -9946351 + (CA)n Simple_repeat Simple_repeat 2 28 0 1512 231 29 52 chr6 172468891 172469228 -9946014 - L1MC4 LINE L1 -141 7901 7577 204 379 29 0 chr6 172469728 172469831 -9945411 + L2 LINE L2 1630 1735 -1579 293 319 95 6 chr6 172469865 172470034 -9945208 + L2 LINE L2 1899 2082 -1232 579 291 95 23 chr6 172470077 172470383 -9944859 + L2 LINE L2 2018 2345 -969 525 188 51 8 chr6 172470385 172470502 -9944740 - MLT1B LTR MaLR 0 390 269 2200 93 27 0 chr6 172471552 172471853 -9943389 + AluY SINE Alu 1 309 -2 25 0 0 0 chr6 172471877 172471902 -9943340 + AT_rich Low_complexity Low_complexity 1 25 0 909 92 0 0 chr6 172472555 172472705 -9942537 - AluSc SINE Alu 0 311 162 2127 115 0 3 chr6 172472801 172473106 -9942136 + AluSx SINE Alu 3 306 -6 22 0 0 0 chr6 172473946 172473968 -9941274 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 172475140 172475168 -9940074 + AT_rich Low_complexity Low_complexity 1 28 0 1106 222 77 54 chr6 172475178 172475594 -9939648 + MLT1C LTR MaLR 1 421 -46 378 376 28 44 chr6 172476121 172476291 -9938951 + HAL1 LINE L1 2256 2422 -85 2582 139 27 29 chr6 172476291 172476737 -9938505 + MER65A LTR ERV1 1 445 0 378 376 28 44 chr6 172476737 172476816 -9938426 + HAL1 LINE L1 2422 2501 -6 261 98 0 0 chr6 172477402 172477443 -9937799 + (TC)n Simple_repeat Simple_repeat 1 41 0 207 279 25 14 chr6 172477876 172477947 -9937295 + MIR SINE MIR 3 75 -133 241 234 0 0 chr6 172478379 172478426 -9936816 + MLT1J1 LTR MaLR 380 426 -20 187 200 15 31 chr6 172478814 172478879 -9936363 + CT-rich Low_complexity Low_complexity 2 65 0 224 355 182 26 chr6 172479193 172479539 -9935703 + L2 LINE L2 2278 2677 -637 214 317 185 50 chr6 172479657 172479916 -9935326 + L2 LINE L2 2979 3272 0 1582 173 46 3 chr6 172481916 172482200 -9933042 + AluJb SINE Alu 6 301 -11 478 313 82 33 chr6 172482354 172482597 -9932645 - MIR SINE MIR 0 262 8 657 277 16 0 chr6 172484444 172484628 -9930614 - L1MD3 LINE L1 -11 7984 7798 198 384 18 9 chr6 172484926 172485038 -9930204 + MIR SINE MIR 46 158 -104 21 0 0 0 chr6 172485133 172485154 -9930088 + AT_rich Low_complexity Low_complexity 1 21 0 190 314 93 8 chr6 172485352 172485470 -9929772 + MIR SINE MIR 106 233 -29 1795 181 7 0 chr6 172486284 172486594 -9928648 + AluJo SINE Alu 1 312 0 363 301 96 13 chr6 172487535 172487691 -9927551 - MER117 DNA MER1_type -28 169 1 183 0 148 0 chr6 172488487 172488514 -9926728 - MIR SINE MIR -5 257 227 413 262 77 36 chr6 172488520 172488688 -9926554 + MER3 DNA MER1_type 2 129 -80 616 333 102 17 chr6 172488962 172489383 -9925859 + L1MC4a LINE L1 4797 5253 -893 744 312 109 37 chr6 172489395 172490033 -9925209 + L1MC4a LINE L1 5265 5928 -322 339 238 160 17 chr6 172490117 172490298 -9924944 + MER115 DNA AcHobo 12 218 -475 460 246 261 15 chr6 172490493 172490696 -9924546 - MIR SINE MIR -2 260 8 24 32 0 0 chr6 172490729 172490760 -9924482 + AT_rich Low_complexity Low_complexity 1 31 0 186 118 0 0 chr6 172491266 172491300 -9923942 + (TG)n Simple_repeat Simple_repeat 1 34 0 476 237 84 37 chr6 172491318 172491508 -9923734 - L2 LINE L2 0 3313 3115 2964 137 124 4 chr6 172491615 172492161 -9923081 - MER39B LTR ERV1 -41 612 1 222 226 48 32 chr6 172492344 172492406 -9922836 - MIR SINE MIR -178 84 22 330 26 0 0 chr6 172492870 172492909 -9922333 + (CCCTG)n Simple_repeat Simple_repeat 3 41 0 22 0 0 0 chr6 172493466 172493488 -9921754 + GC_rich Low_complexity Low_complexity 1 22 0 247 256 37 12 chr6 172495925 172496007 -9919235 + MIR SINE MIR 62 145 -63 2257 60 0 0 chr6 172496178 172496487 -9918755 - AluY SINE Alu 0 309 1 1855 115 59 0 chr6 172497892 172498179 -9917063 - AluSx SINE Alu -8 304 1 230 342 25 0 chr6 172498405 172498484 -9916758 - L2 LINE L2 -3 3269 3189 220 366 36 0 chr6 172498758 172498870 -9916372 - MER5A DNA MER1_type -59 130 15 336 263 189 37 chr6 172499252 172499469 -9915773 + MIR SINE MIR 7 256 -6 311 173 0 19 chr6 172499523 172499575 -9915667 - MER58D DNA MER1_type -335 51 1 808 184 174 63 chr6 172499660 172499867 -9915375 + AluJb SINE Alu 70 299 -13 434 236 32 66 chr6 172499911 172500238 -9915004 + MLT1J2 LTR MaLR 43 425 -25 2103 68 0 44 chr6 172500552 172500881 -9914361 + AluY SINE Alu 1 316 0 2145 107 0 0 chr6 172505252 172505542 -9909700 + AluSq SINE Alu 1 290 -23 489 324 96 23 chr6 172505977 172506499 -9908743 + L1ME4a LINE L1 4639 5198 -948 569 312 13 7 chr6 172506609 172506763 -9908479 - MIR SINE MIR -21 241 87 348 278 59 80 chr6 172506780 172506967 -9908275 + L1ME4a LINE L1 5211 5393 -753 535 207 27 9 chr6 172508964 172509075 -9906167 + MER81 DNA DNA 2 114 0 384 310 106 40 chr6 172509087 172509313 -9905929 + L1ME4a LINE L1 5687 5927 -194 304 291 50 21 chr6 172510238 172510379 -9904863 - MIR SINE MIR -28 234 90 892 181 44 28 chr6 172510461 172510643 -9904599 - MER5A DNA MER1_type -4 185 1 2580 117 5 11 chr6 172510791 172511168 -9904074 - THE1C LTR MaLR 0 375 1 4637 125 111 1 chr6 172511168 172511890 -9903352 - THE1C-int LTR MaLR 0 1580 780 1141 86 76 7 chr6 172511878 172512151 -9903091 - THE1C-int LTR MaLR -1357 223 1 * 2435 105 47 11 chr6 172512151 172512513 -9902729 - THE1C LTR MaLR 0 375 1 200 246 35 0 chr6 172512829 172512886 -9902356 - L2 LINE L2 -45 3268 3210 330 361 72 34 chr6 172513129 172513805 -9901437 + L2 LINE L2 1248 1949 -1365 1615 268 78 25 chr6 172514827 172515356 -9899886 - MLT1G LTR MaLR -2 588 32 6838 60 13 2 chr6 172516259 172517129 -9898113 - L1PA7 LINE L1 0 6154 5276 1402 124 4 35 chr6 172517108 172517365 -9897877 - L1P3 LINE L1 -3563 2898 2650 * 10401 108 5 11 chr6 172517348 172519540 -9895702 - L1P3 LINE L1 -4271 2190 7 246 62 0 0 chr6 172519555 172519587 -9895655 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 190 239 0 22 chr6 172520212 172520258 -9894984 + L2 LINE L2 1379 1423 -1891 633 305 62 5 chr6 172520910 172521120 -9894122 + MIR SINE MIR 16 237 -25 3045 84 40 46 chr6 172521148 172521602 -9893640 + L1PA8 LINE L1 5713 6163 -9 2111 139 17 0 chr6 172522283 172522578 -9892664 + AluSx SINE Alu 6 305 -7 243 319 0 64 chr6 172523119 172523213 -9892029 - MIR3 SINE MIR -3 205 118 2082 139 58 93 chr6 172523677 172524109 -9891133 - MER47B DNA MER2_type -1 417 1 22 0 0 0 chr6 172525313 172525335 -9889907 + AT_rich Low_complexity Low_complexity 1 22 0 193 229 82 16 chr6 172526163 172526224 -9889018 - L2 LINE L2 -541 2773 2709 21 57 0 0 chr6 172527038 172527073 -9888169 + AT_rich Low_complexity Low_complexity 1 35 0 1224 275 17 94 chr6 172527286 172528104 -9887138 + L1ME LINE L1 261 1015 -5055 1124 160 147 112 chr6 172528792 172529023 -9886219 - MER2 DNA MER2_type 0 345 99 1780 133 65 0 chr6 172529023 172529286 -9885956 - AluSx SINE Alu -32 280 1 1124 160 147 112 chr6 172529286 172529366 -9885876 - MER2 DNA MER2_type -246 99 23 332 267 144 93 chr6 172529503 172529739 -9885503 + HAL1 LINE L1 170 417 -2090 1200 216 43 14 chr6 172533002 172533284 -9881958 + MLT1E2 LTR MaLR 337 626 0 1136 182 5 5 chr6 172533402 172533589 -9881653 - MER5A DNA MER1_type -2 187 1 193 265 0 0 chr6 172534376 172534425 -9880817 - L2 LINE L2 0 3313 3265 1659 245 28 8 chr6 172535836 172536236 -9879006 - MLT1C LTR MaLR -1 466 59 197 219 141 31 chr6 172536362 172536426 -9878816 - MER5B DNA MER1_type -80 98 28 401 316 163 0 chr6 172536481 172536671 -9878571 - MIR SINE MIR -10 252 32 219 36 0 0 chr6 172537964 172537992 -9877250 + (TTA)n Simple_repeat Simple_repeat 1 28 0 302 0 0 26 chr6 172538334 172538373 -9876869 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 3460 24 0 0 chr6 172538373 172538748 -9876494 - L1PA4 LINE L1 -10 6145 5771 302 146 0 18 chr6 172539717 172539772 -9875470 - LTR33A LTR ERVL -15 508 455 349 278 75 8 chr6 172540011 172540144 -9875098 - LTR33A LTR ERVL -367 156 15 952 262 62 31 chr6 172541040 172541361 -9873881 + Charlie2 DNA MER1_type 12 342 -2520 2486 226 46 14 chr6 172541379 172542103 -9873139 + Charlie2 DNA MER1_type 1861 2607 -255 1981 134 20 54 chr6 172542146 172542497 -9872745 - MER1B DNA MER1_type 0 339 1 463 265 127 0 chr6 172542498 172542528 -9872714 + Charlie2 DNA MER1_type 2659 2684 -178 2401 94 0 0 chr6 172542528 172542827 -9872415 + AluSc SINE Alu 1 299 -10 463 265 127 0 chr6 172542827 172542977 -9872265 + Charlie2 DNA MER1_type 2684 2862 0 11965 186 59 44 chr6 172544806 172545728 -9869514 + L1MC1 LINE L1 20 927 -5686 189 0 0 0 chr6 172545728 172545749 -9869493 + (CA)n Simple_repeat Simple_repeat 2 22 0 11965 186 59 44 chr6 172545749 172551239 -9864003 + L1MC1 LINE L1 927 6532 -81 189 333 15 0 chr6 172551678 172551744 -9863498 - MIR SINE MIR -158 104 38 275 119 0 0 chr6 172551929 172551971 -9863271 + FLAM SINE Alu 85 126 -7 246 176 0 0 chr6 172551974 172552025 -9863217 + (TATAA)n Simple_repeat Simple_repeat 3 53 0 5784 2 0 0 chr6 172554077 172554701 -9860541 - L1HS LINE L1 0 6155 5532 2118 139 0 0 chr6 172555072 172555373 -9859869 - AluSx SINE Alu -11 301 1 216 97 0 0 chr6 172556013 172556044 -9859198 + (TATG)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr6 172556044 172556064 -9859178 + (CA)n Simple_repeat Simple_repeat 2 21 0 189 147 0 0 chr6 172556424 172556458 -9858784 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 1834 150 3 29 chr6 172556513 172556819 -9858423 + AluJo SINE Alu 1 298 -14 2128 110 3 3 chr6 172557137 172557428 -9857814 + AluSq SINE Alu 1 291 -22 227 252 32 41 chr6 172557903 172558026 -9857216 + A-rich Low_complexity Low_complexity 1 122 0 * 298 309 6 22 chr6 172557939 172558120 -9857122 + GA-rich Low_complexity Low_complexity 3 180 0 452 249 67 26 chr6 172558423 172558616 -9856626 - L1MC5 LINE L1 -32 7929 7729 2317 222 73 68 chr6 172558778 172559555 -9855687 - L1MC5 LINE L1 -248 7713 6928 3011 89 8 0 chr6 172559555 172559927 -9855315 - THE1C LTR MaLR 0 375 1 2317 222 73 68 chr6 172559927 172560128 -9855114 - L1MC5 LINE L1 -1033 6928 6730 646 185 0 25 chr6 172561837 172561994 -9853248 + (TGG)n Simple_repeat Simple_repeat 1 153 0 394 258 199 7 chr6 172562036 172562187 -9853055 - MIR SINE MIR -64 198 19 400 121 77 44 chr6 172562568 172562659 -9852583 + MLT1K LTR MaLR 486 579 -9 303 248 185 4 chr6 172562832 172562994 -9852248 + MIR SINE MIR 38 230 -32 197 295 57 38 chr6 172563250 172563355 -9851887 - MIR SINE MIR -67 141 35 31 26 0 0 chr6 172566166 172566204 -9849038 + AT_rich Low_complexity Low_complexity 1 38 0 282 125 0 0 chr6 172566882 172566930 -9848312 + (TG)n Simple_repeat Simple_repeat 1 48 0 219 380 44 9 chr6 172567090 172567203 -9848039 + L2 LINE L2 3141 3257 -15 22 80 0 0 chr6 172567230 172567280 -9847962 + AT_rich Low_complexity Low_complexity 1 50 0 216 0 0 0 chr6 172569212 172569236 -9846006 + (T)n Simple_repeat Simple_repeat 1 24 0 3428 215 74 10 chr6 172569878 172570678 -9844564 + MER21B LTR ERV1 12 862 -1 3441 138 6 4 chr6 172570841 172571341 -9843901 - MER1A DNA MER1_type 0 529 29 2641 29 23 0 chr6 172571638 172571945 -9843297 - L1PA4 LINE L1 -4 6151 5838 198 71 0 0 chr6 172572099 172572127 -9843115 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2419 80 6 6 chr6 172572973 172573286 -9841956 - AluSp SINE Alu 0 313 1 1949 131 28 64 chr6 172573369 172573758 -9841484 - THE1C LTR MaLR 0 375 1 3397 261 88 43 chr6 172574702 172576096 -9839146 - L1ME2 LINE L1 -8 6225 4895 1583 203 7 10 chr6 172576096 172576391 -9838851 - AluJo SINE Alu -8 294 1 3397 261 88 43 chr6 172576391 172577926 -9837316 - L1ME2 LINE L1 -1338 4895 3158 419 280 0 35 chr6 172578032 172578175 -9837067 - Charlie1 DNA MER1_type -1 2760 2623 * 679 261 84 31 chr6 172578160 172578386 -9836856 - Charlie1 DNA MER1_type -2522 239 2 2126 269 101 55 chr6 172578388 172581311 -9833931 - L1ME2 LINE L1 -3084 3131 109 192 111 0 0 chr6 172581502 172581538 -9833704 + (TA)n Simple_repeat Simple_repeat 1 36 0 243 0 0 0 chr6 172581561 172581588 -9833654 + (TG)n Simple_repeat Simple_repeat 2 28 0 609 313 170 37 chr6 172582619 172583079 -9832163 + L1MCc LINE L1 367 887 -5536 2210 118 3 0 chr6 172584049 172584354 -9830888 + AluSp SINE Alu 1 306 -7 355 338 126 45 chr6 172586452 172586946 -9828296 + L1MCc LINE L1 355 888 -5535 310 324 116 63 chr6 172589600 172590109 -9825133 + L1MCc LINE L1 353 888 -5535 560 251 39 114 chr6 172591942 172592301 -9822941 + MLT1I LTR MaLR 61 392 -17 297 304 66 55 chr6 172592500 172592757 -9822485 + MLT1H LTR MaLR 94 353 -196 2068 202 73 69 chr6 172592845 172593395 -9821847 + MLT2B3 LTR ERVL 3 554 0 356 250 106 19 chr6 172595437 172595541 -9819701 + MER81 DNA DNA 2 114 0 7796 33 20 0 chr6 172597654 172598860 -9816382 - L1PA5 LINE L1 -2 6152 4935 314 325 120 31 chr6 172601380 172601672 -9813570 - L1ME3A LINE L1 -244 5926 5609 1535 208 16 6 chr6 172603214 172603532 -9811710 + MER33 DNA MER1_type 4 324 0 238 280 160 0 chr6 172604446 172604521 -9810721 - MER5A DNA MER1_type -94 95 9 219 239 0 0 chr6 172604894 172604961 -9810281 + (TA)n Simple_repeat Simple_repeat 1 67 0 36 0 0 0 chr6 172605020 172605056 -9810186 + AT_rich Low_complexity Low_complexity 1 36 0 288 217 0 0 chr6 172605059 172605119 -9810123 - MIR SINE MIR -108 154 95 1104 236 20 0 chr6 172605667 172605921 -9809321 + L1ME1 LINE L1 5901 6159 -7 632 287 125 76 chr6 172606628 172607165 -9808077 - MLT1L LTR MaLR -14 601 39 2032 79 19 0 chr6 172607252 172607518 -9807724 - AluSg SINE Alu -14 296 26 414 289 94 20 chr6 172607624 172607773 -9807469 + MIR SINE MIR 1 160 -102 1065 208 77 0 chr6 172607805 172608012 -9807230 + MER58A DNA MER1_type 1 223 -1 1545 187 62 0 chr6 172608220 172608335 -9806907 + AluJo SINE Alu 1 107 -205 411 21 0 0 chr6 172608335 172608383 -9806859 + (CTA)n Simple_repeat Simple_repeat 1 48 0 1545 187 62 0 chr6 172608383 172608540 -9806702 + AluJo SINE Alu 107 290 -22 22 0 0 0 chr6 172608540 172608562 -9806680 + AT_rich Low_complexity Low_complexity 1 22 0 438 346 93 4 chr6 172609177 172609414 -9805828 + MIR SINE MIR 2 259 -3 345 267 111 41 chr6 172609627 172609799 -9805443 - MLT1J LTR MaLR 0 511 328 348 328 48 21 chr6 172609873 172610059 -9805183 - MLT1J LTR MaLR -312 199 9 509 197 37 96 chr6 172610085 172610273 -9804969 - MER104 DNA Tc2 -3 177 1 231 261 270 43 chr6 172610672 172610883 -9804359 - L2 LINE L2 0 3272 3014 348 266 92 18 chr6 172612351 172612460 -9802782 - L2 LINE L2 -19 3253 3137 348 24 0 0 chr6 172613404 172613445 -9801797 + (CA)n Simple_repeat Simple_repeat 2 42 0 780 227 136 8 chr6 172613525 172613876 -9801366 - MLT1C LTR MaLR 0 467 1 362 277 21 0 chr6 172613925 172614019 -9801223 - L2 LINE L2 -10 3303 3208 1351 172 133 14 chr6 172618927 172619206 -9796036 + AluJo SINE Alu 1 312 0 1108 246 66 12 chr6 172621114 172621160 -9794082 - MER63 DNA MER1_type -6 1054 1012 2090 120 74 11 chr6 172621160 172621511 -9793731 - THE1C LTR MaLR -2 373 1 1108 246 66 12 chr6 172621511 172621868 -9793374 - MER63 DNA MER1_type -48 1012 2 248 318 34 0 chr6 172622702 172622790 -9792452 + L1MD2 LINE L1 4910 5000 -1146 514 110 68 21 chr6 172623133 172623369 -9791873 + (TAGA)n Simple_repeat Simple_repeat 1 247 0 25 0 0 0 chr6 172623800 172623825 -9791417 + AT_rich Low_complexity Low_complexity 1 25 0 197 0 71 0 chr6 172624034 172624062 -9791180 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 4876 64 17 15 chr6 172624513 172625618 -9789624 - MER11A LTR ERVK -19 1247 1 850 200 29 0 chr6 172629642 172629817 -9785425 + L1MB4 LINE L1 6000 6179 -1 470 291 53 0 chr6 172629818 172629969 -9785273 - MIR SINE MIR -3 259 101 799 202 2 12 chr6 172631454 172631937 -9783305 + (ATGGTG)n Simple_repeat Simple_repeat 1 478 0 5429 52 6 0 chr6 172632064 172632737 -9782505 + L1P LINE L1 3825 4501 -1645 418 281 52 33 chr6 172684207 172684360 -9730882 + LTR16C LTR ERVL 71 226 -265 4244 183 33 31 chr6 172684564 172685550 -9729692 + L1MD2 LINE L1 5147 6130 -229 394 94 0 0 chr6 172685650 172685703 -9729539 - HERVL-A2 LTR ERVL -5601 53 1 412 111 0 0 chr6 172685703 172685766 -9729476 - MLT2A2 LTR ERVL 0 444 382 1638 119 20 12 chr6 172685826 172686070 -9729172 - MLT2A2 LTR ERVL -35 418 173 786 310 90 44 chr6 172686116 172686734 -9728508 - L1PA12 LINE L1 -5501 2080 1228 2051 161 6 11 chr6 172686968 172687322 -9727920 - LTR60 LTR ERV1 -233 353 2 239 274 214 19 chr6 172688061 172688327 -9726915 - L2 LINE L2 -1357 1957 1640 1773 197 154 18 chr6 172689677 172690124 -9725118 + LTR36 LTR ERV1 104 611 0 267 333 58 51 chr6 172690209 172690365 -9724877 + MIR SINE MIR 51 207 -55 2360 66 0 23 chr6 172691727 172692029 -9723213 - AluY SINE Alu -16 295 1 1948 162 0 6 chr6 172692131 172692445 -9722797 + AluSx SINE Alu 1 312 0 27 49 0 0 chr6 172692491 172692532 -9722710 + AT_rich Low_complexity Low_complexity 1 41 0 212 260 0 0 chr6 172692784 172692834 -9722408 - L2 LINE L2 -1366 1948 1899 709 236 25 6 chr6 172692863 172693024 -9722218 - MSTD LTR MaLR 0 396 233 180 0 0 0 chr6 172693082 172693102 -9722140 + (CA)n Simple_repeat Simple_repeat 2 21 0 913 180 33 16 chr6 172693138 172693321 -9721921 + MLT1A2 LTR MaLR 189 374 0 276 321 127 8 chr6 172694401 172694535 -9720707 - MIR SINE MIR -108 154 5 182 258 0 48 chr6 172694562 172694624 -9720618 - MIR SINE MIR 0 262 204 2390 133 0 6 chr6 172694631 172694991 -9720251 - L1MA6 LINE L1 0 6300 5943 2163 146 11 11 chr6 172695004 172695368 -9719874 - L1MA5A LINE L1 -11 6286 5923 1890 113 3 14 chr6 172695369 172695651 -9719591 - MER50 LTR ERV1 -23 711 433 1216 134 39 65 chr6 172695649 172695881 -9719361 - MER50 LTR ERV1 -500 234 9 * 4094 126 32 5 chr6 172695890 172696577 -9718665 - L1MA5A LINE L1 -372 5925 5223 470 265 53 37 chr6 172696577 172696766 -9718476 - MIR SINE MIR -38 224 33 202 259 12 24 chr6 172697779 172697864 -9717378 + G-rich Low_complexity Low_complexity 6 89 0 278 247 0 56 chr6 172699442 172699531 -9715711 - MER76 LTR ERV 0 688 605 197 329 7 51 chr6 172699852 172699989 -9715253 - L2 LINE L2 -1313 2001 1871 5168 141 13 8 chr6 172700343 172700439 -9714803 - L1PA16 LINE L1 -1 6165 6071 1927 152 35 35 chr6 172700439 172700814 -9714428 + THE1C LTR MaLR 1 375 0 5168 141 13 8 chr6 172700814 172701611 -9713631 - L1PA16 LINE L1 -95 6071 5263 1601 133 72 135 chr6 172701611 172701851 -9713391 - THE1C LTR MaLR 0 375 168 1976 132 7 17 chr6 172701851 172702146 -9713096 - AluSx SINE Alu -20 292 1 1601 133 72 135 chr6 172702146 172702305 -9712937 - THE1C LTR MaLR -207 168 1 5168 141 13 8 chr6 172702305 172702449 -9712793 - L1PA16 LINE L1 -903 5263 5121 2511 227 25 30 chr6 172702444 172703106 -9712136 - L1PA13 LINE L1 -4430 2367 1691 * 1179 150 98 38 chr6 172703106 172703372 -9711870 - THE1C LTR MaLR -93 282 1 429 307 139 36 chr6 172703877 172704294 -9710948 - L2 LINE L2 -1 3312 2853 3453 173 56 35 chr6 172704396 172705108 -9710134 + LTR8A LTR ERV1 1 727 0 3090 167 7 37 chr6 172705239 172705831 -9709411 + MER4B LTR ERV1 1 574 -36 39 22 0 0 chr6 172706354 172706400 -9708842 + AT_rich Low_complexity Low_complexity 1 46 0 6288 26 0 0 chr6 172710843 172711527 -9703715 - L1PA4 LINE L1 -3 6152 5469 390 242 108 0 chr6 172717487 172717681 -9697561 + L1P5 LINE L1 5222 5433 -721 251 266 16 0 chr6 172717764 172717828 -9697414 + L1ME LINE L1 5802 5866 -255 586 180 101 27 chr6 172718884 172719091 -9696151 - MER31B LTR ERV1 -137 329 1 256 88 0 0 chr6 172720212 172720246 -9694996 - Alu SINE Alu -274 34 1 * 292 233 93 35 chr6 172720246 172720330 -9694912 - MER77 LTR ERV1 -94 511 405 228 229 19 86 chr6 172720330 172720435 -9694807 - L1M4 LINE L1 -1163 4983 4886 256 350 196 0 chr6 172720440 172720603 -9694639 + L2 LINE L2 2534 2728 -586 2653 162 63 4 chr6 172720608 172721113 -9694129 + L1MC3 LINE L1 6936 7470 -315 1398 52 0 18 chr6 172721116 172721381 -9693861 + AluSx SINE Alu 1 199 -113 513 131 50 31 chr6 172722682 172722943 -9692299 + (CA)n Simple_repeat Simple_repeat 1 266 0 424 136 57 34 chr6 172722959 172723135 -9692107 + (CA)n Simple_repeat Simple_repeat 1 180 0 1206 188 0 13 chr6 172723995 172724229 -9691013 + MLT2C2 LTR ERVL 1 231 -233 1524 163 89 18 chr6 172724232 172724514 -9690728 + AluJo SINE Alu 3 304 -8 366 277 40 0 chr6 172724564 172724665 -9690577 + MER5A DNA MER1_type 1 105 -84 390 159 8 143 chr6 172724744 172724870 -9690372 + L2 LINE L2 3200 3308 -5 2260 129 0 0 chr6 172725401 172725710 -9689532 + AluSx SINE Alu 1 309 -3 1943 139 7 7 chr6 172725875 172726177 -9689065 + AluSq SINE Alu 1 302 -11 2323 68 13 39 chr6 172726728 172727037 -9688205 - AluY SINE Alu -10 301 1 534 169 0 0 chr6 172727106 172727189 -9688053 - FLAM SINE Alu -21 122 40 238 175 10 52 chr6 172727499 172727596 -9687646 + (TA)n Simple_repeat Simple_repeat 2 94 0 241 381 14 20 chr6 172727953 172728100 -9687142 + MER5B DNA MER1_type 2 147 -31 895 187 0 0 chr6 172728781 172728931 -9686311 - AluSg SINE Alu -26 284 135 234 0 0 0 chr6 172728931 172728957 -9686285 + (TA)n Simple_repeat Simple_repeat 2 27 0 345 300 0 0 chr6 172728977 172729067 -9686175 + L1MC4 LINE L1 6614 6703 -1339 747 103 86 0 chr6 172729079 172729195 -9686047 - AluSg SINE Alu -183 127 2 393 256 30 30 chr6 172729698 172729862 -9685380 - LTR37B LTR ERV1 -106 362 199 2601 30 30 0 chr6 172730059 172730357 -9684885 + AluY SINE Alu 1 307 -4 2412 140 9 91 chr6 172730375 172730838 -9684404 - MER57B LTR ERV1 -9 425 1 1048 195 32 9 chr6 172731105 172731326 -9683916 - MLT1A1 LTR MaLR -127 238 13 1978 113 60 3 chr6 172732393 172732675 -9682567 - AluSx SINE Alu -14 298 1 1945 87 11 56 chr6 172732836 172733122 -9682120 - AluSx SINE Alu 0 312 40 2465 75 0 31 chr6 172733142 172733462 -9681780 - AluY SINE Alu -1 310 1 354 260 78 8 chr6 172733503 172733651 -9681591 - L1MEc LINE L1 -4699 1564 1274 1341 284 59 84 chr6 172733702 172734091 -9681151 - L1MEc LINE L1 -4941 1178 781 1971 156 0 0 chr6 172734091 172734380 -9680862 - AluSx SINE Alu -23 289 1 1341 284 59 84 chr6 172734380 172735188 -9680054 - L1MEc LINE L1 -5338 781 11 292 308 0 0 chr6 172735888 172735966 -9679276 - L2 LINE L2 0 3272 3195 298 299 148 14 chr6 172736324 172736541 -9678701 - MIR SINE MIR 0 262 17 2713 43 0 0 chr6 172738246 172738551 -9676691 + AluY SINE Alu 1 305 -6 1954 114 4 21 chr6 172738732 172739012 -9676230 - AluSx SINE Alu -37 275 1 492 248 42 122 chr6 172739053 172739291 -9675951 + L1ME LINE L1 5534 5752 -369 2295 119 0 0 chr6 172739988 172740291 -9674951 + AluSx SINE Alu 1 303 -9 497 307 116 24 chr6 172740419 172740869 -9674373 + L2 LINE L2 2192 2682 -632 199 303 0 0 chr6 172740986 172741062 -9674180 + L2 LINE L2 2986 3061 -252 281 278 120 34 chr6 172741171 172741405 -9673837 + LTR16A LTR ERVL 103 356 -94 2033 142 0 13 chr6 172741634 172741937 -9673305 + AluSx SINE Alu 1 299 -13 239 333 26 8 chr6 172742047 172742164 -9673078 - L2 LINE L2 -222 3050 2932 4335 167 35 61 chr6 172743341 172744261 -9670981 - MER21A LTR ERV1 -19 912 17 2325 75 3 0 chr6 172744262 172744570 -9670672 + AluSg SINE Alu 1 309 0 270 0 0 0 chr6 172744570 172744583 -9670659 + (CA)n Simple_repeat Simple_repeat 1 43 0 270 0 0 0 chr6 172744583 172744613 -9670629 + (CA)n Simple_repeat Simple_repeat 2 31 0 21 82 0 0 chr6 172744765 172744814 -9670428 + AT_rich Low_complexity Low_complexity 1 49 0 2333 100 0 0 chr6 172745715 172746015 -9669227 + AluSq SINE Alu 1 300 -13 29 47 0 0 chr6 172746095 172746138 -9669104 + AT_rich Low_complexity Low_complexity 1 43 0 481 148 34 0 chr6 172746171 172746778 -9668464 + (TA)n Simple_repeat Simple_repeat 1 627 0 180 176 0 0 chr6 172747322 172747356 -9667886 + (CA)n Simple_repeat Simple_repeat 2 35 0 2528 78 0 0 chr6 172749424 172749733 -9665509 + AluSg SINE Alu 1 309 -1 295 319 43 0 chr6 172750664 172750780 -9664462 + MIR SINE MIR 142 262 0 336 83 0 0 chr6 172750999 172751047 -9664195 + (TG)n Simple_repeat Simple_repeat 1 48 0 2298 102 0 13 chr6 172752082 172752385 -9662857 + AluSx SINE Alu 1 299 -13 1986 110 22 4 chr6 172752725 172753030 -9662212 - AluSc SINE Alu 0 310 1 231 238 131 25 chr6 172753128 172753250 -9661992 - L1ME LINE L1 -220 5901 5767 2100 145 3 0 chr6 172753292 172753596 -9661646 + AluSx SINE Alu 1 305 -7 187 254 91 0 chr6 172754159 172754214 -9661028 + L2 LINE L2 3181 3240 -73 365 159 43 0 chr6 172755287 172755356 -9659886 - MER58B DNA MER1_type 0 341 270 828 238 98 81 chr6 172755976 172756235 -9659007 + HAL1b LINE L1 809 1062 -286 2282 98 14 0 chr6 172756235 172756522 -9658720 - AluSg SINE Alu -19 291 1 828 238 98 81 chr6 172756522 172756792 -9658450 + HAL1b LINE L1 1062 1347 -1 1399 138 159 41 chr6 172757340 172757660 -9657582 + L1MB8 LINE L1 5821 6178 0 1901 137 20 10 chr6 172757705 172757997 -9657245 - AluJb SINE Alu -17 295 1 259 212 71 35 chr6 172759454 172759567 -9655675 - MIR SINE MIR -60 202 86 14375 154 67 60 chr6 172759831 172761365 -9653877 - MER4A-int LTR ERV1 -358 6240 4718 1771 95 122 4 chr6 172761365 172761628 -9653614 + AluSg SINE Alu 2 295 -5 14375 154 67 60 chr6 172761628 172761646 -9653596 - MER4A-int LTR ERV1 -1880 4718 4702 2437 82 3 0 chr6 172761646 172761940 -9653302 + AluSp SINE Alu 1 295 -18 14375 154 67 60 chr6 172761940 172763598 -9651644 - MER4A-int LTR ERV1 -1896 4702 3001 1772 137 54 4 chr6 172763598 172763876 -9651366 - AluSx SINE Alu -20 292 1 14375 154 67 60 chr6 172763876 172764145 -9651097 - MER4A-int LTR ERV1 -3597 3001 2735 1666 191 95 71 chr6 172763957 172764826 -9650416 - LTR57-int LTR ERVL -3756 1587 993 5566 157 51 50 chr6 172764244 172764400 -9650842 - MER4A-int LTR ERV1 -4113 2485 2331 2298 69 38 3 chr6 172764400 172764689 -9650553 + AluSp SINE Alu 1 299 -14 5566 157 51 50 chr6 172764689 172765052 -9650190 - MER4A-int LTR ERV1 -4267 2331 1970 4990 49 0 2 chr6 172765052 172765644 -9649598 - LTR10C LTR ERV1 0 591 1 5566 157 51 50 chr6 172765644 172766414 -9648828 - MER4A-int LTR ERV1 -4628 1970 1194 540 0 0 0 chr6 172766428 172766488 -9648754 + (CA)n Simple_repeat Simple_repeat 2 61 0 3858 148 144 82 chr6 172766488 172767532 -9647710 - MER4A-int LTR ERV1 -5490 1108 1 714 104 10 0 chr6 172767535 172767631 -9647611 - MER4A LTR ERV1 0 664 568 841 99 74 26 chr6 172767634 172767756 -9647486 + MER4-int LTR ERV1 503 618 -4397 294 73 0 0 chr6 172767756 172767797 -9647445 + (TG)n Simple_repeat Simple_repeat 2 42 0 841 99 74 26 chr6 172767797 172767852 -9647390 + MER4-int LTR ERV1 618 645 -4370 2094 121 0 0 chr6 172767852 172768132 -9647110 - AluSg SINE Alu -7 303 24 841 99 74 26 chr6 172768132 172768151 -9647091 + MER4-int LTR ERV1 645 662 -4353 * 5516 102 38 20 chr6 172768133 172768996 -9646246 + MER4-int LTR ERV1 771 1649 -3366 1343 110 141 9 chr6 172768997 172769224 -9646018 - LTR8 LTR ERV1 -434 257 1 960 37 0 15 chr6 172769224 172769358 -9645884 + MER4-int LTR ERV1 2737 2868 -3730 1973 148 7 0 chr6 172769358 172769655 -9645587 + AluSx SINE Alu 1 299 -13 1694 144 38 35 chr6 172769659 172770116 -9645126 + MER4-int LTR ERV1 3149 3680 -2918 * 4137 87 56 45 chr6 172770115 172770392 -9644850 + MER4-int LTR ERV1 3836 4109 -2489 2147 109 3 0 chr6 172770392 172770703 -9644539 - AluSp SINE Alu 0 312 1 4137 87 56 45 chr6 172770703 172771088 -9644154 + MER4-int LTR ERV1 4109 4506 -2092 1714 134 0 88 chr6 172771093 172771413 -9643829 + MER4A LTR ERV1 373 664 0 1226 139 19 28 chr6 172771818 172772033 -9643209 - MER20 DNA MER1_type 0 219 7 294 0 27 0 chr6 172772816 172772853 -9642389 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2217 102 14 0 chr6 172772853 172773143 -9642099 - AluSp SINE Alu -14 295 1 2454 77 0 10 chr6 172773154 172773466 -9641776 - AluY SINE Alu -2 309 1 5125 139 12 15 chr6 172773664 172774512 -9640730 - L1MA4A LINE L1 -5 6298 5454 692 105 86 0 chr6 172774515 172774620 -9640622 + AluJb SINE Alu 11 124 -188 1896 144 13 22 chr6 172774949 172775262 -9639980 - AluJb SINE Alu 0 312 3 2410 103 0 0 chr6 172775390 172775701 -9639541 + AluSx SINE Alu 2 312 0 219 69 0 0 chr6 172776173 172776202 -9639040 + (TG)n Simple_repeat Simple_repeat 2 30 0 198 299 92 63 chr6 172776317 172776435 -9638807 - MIR SINE MIR -14 248 122 2488 70 0 0 chr6 172776435 172776736 -9638506 - AluY SINE Alu -9 302 2 198 299 92 63 chr6 172776736 172776791 -9638451 - MIR SINE MIR -140 122 70 412 272 89 6 chr6 172779284 172779442 -9635800 + L1MC4 LINE L1 7742 7912 -130 235 211 13 26 chr6 172779550 172779626 -9635616 + (CATATA)n Simple_repeat Simple_repeat 5 79 0 5516 138 79 50 chr6 172779636 172779717 -9635525 - Tigger3b DNA MER2_type -1797 1231 1154 2276 80 7 7 chr6 172779717 172780006 -9635236 + AluSx SINE Alu 10 298 -14 5516 138 79 50 chr6 172780006 172780194 -9635048 - Tigger3b DNA MER2_type -1874 1154 973 2106 130 10 0 chr6 172780194 172780486 -9634756 + AluSq SINE Alu 1 295 -18 5516 138 79 50 chr6 172780486 172781369 -9633873 - Tigger3b DNA MER2_type -2055 973 45 237 204 20 0 chr6 172781369 172781418 -9633824 + (TA)n Simple_repeat Simple_repeat 2 51 0 346 292 103 21 chr6 172781465 172781698 -9633544 + LTR10A LTR ERV1 1 252 -357 287 217 29 0 chr6 172781770 172781839 -9633403 + LTR10A LTR ERV1 181 251 -358 1870 138 68 46 chr6 172781843 172782212 -9633030 + LTR10A LTR ERV1 172 548 -61 991 236 49 95 chr6 172782221 172782834 -9632408 + LTR10A-int LTR ERV1 1 585 -6064 262 239 76 33 chr6 172782877 172782969 -9632273 + LTR10A-int LTR ERV1 975 1070 -5579 * 5407 108 12 16 chr6 172782958 172783924 -9631318 + HERV17 LTR ERV1 719 1720 -5176 288 262 167 0 chr6 172783926 172784010 -9631232 - LTR8 LTR ERV1 -438 253 156 11835 166 6 15 chr6 172784010 172787178 -9628064 + Harlequin LTR ERV1 1808 6645 -4 1981 178 143 36 chr6 172787181 172787676 -9627566 + LTR10A LTR ERV1 1 548 -61 2028 115 10 14 chr6 172787686 172787982 -9627260 + AluSp SINE Alu 19 313 0 298 274 9 9 chr6 172787989 172788102 -9627140 + L1MC4 LINE L1 7930 8042 0 3925 112 43 14 chr6 172788411 172788502 -9626740 + LTR9B LTR ERV1 1 88 -556 2262 93 3 10 chr6 172788502 172788813 -9626429 - AluSq SINE Alu -4 309 1 3925 112 43 14 chr6 172788813 172789347 -9625895 + LTR9B LTR ERV1 88 644 0 2046 156 50 50 chr6 172789670 172790222 -9625020 + MLT2A2 LTR ERVL 1 554 0 2215 108 3 0 chr6 172790248 172790543 -9624699 - AluSc SINE Alu -13 296 1 1493 183 47 30 chr6 172791479 172791779 -9623463 - AluJo SINE Alu -7 305 1 272 27 27 0 chr6 172791789 172791826 -9623416 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 2293 71 4 0 chr6 172791828 172792109 -9623133 - AluSq SINE Alu -31 282 1 1218 191 148 0 chr6 172792624 172792927 -9622315 + MLT1B LTR MaLR 1 348 -42 246 286 26 13 chr6 172793413 172793490 -9621752 + MIR3 SINE MIR 131 208 0 352 280 50 77 chr6 172794601 172794687 -9620555 - MIR3 SINE MIR -6 202 115 4731 119 17 50 chr6 172794687 172795045 -9620197 - MER4E LTR ERV1 0 779 411 1932 129 39 7 chr6 172795045 172795331 -9619911 + AluSx SINE Alu 1 295 -17 4731 119 17 50 chr6 172795331 172795777 -9619465 - MER4E LTR ERV1 -368 411 1 352 280 50 77 chr6 172795777 172795872 -9619370 - MIR3 SINE MIR -93 115 26 2370 154 44 16 chr6 172796211 172796357 -9618885 - L1MB4 LINE L1 -10 6170 6030 1751 143 45 117 chr6 172796357 172796526 -9618716 + MLT1B LTR MaLR 1 181 -209 2148 88 36 0 chr6 172796526 172796831 -9618411 + AluSx SINE Alu 1 315 0 1751 143 45 117 chr6 172796831 172797079 -9618163 + MLT1B LTR MaLR 181 390 0 2370 154 44 16 chr6 172797079 172797385 -9617857 - L1MB4 LINE L1 -150 6030 5705 3186 172 19 76 chr6 172797532 172798253 -9616989 - LTR8 LTR ERV1 -11 680 1 12164 177 91 74 chr6 172798253 172798459 -9616783 - HUERS-P1 LTR ERV1 0 6263 6062 2371 92 3 0 chr6 172798459 172798753 -9616489 - AluSp SINE Alu -18 295 1 12164 177 91 74 chr6 172798753 172802645 -9612597 - HUERS-P1 LTR ERV1 -201 6062 1866 2401 91 0 0 chr6 172802645 172802952 -9612290 - AluSg SINE Alu -3 307 1 12164 177 91 74 chr6 172802952 172804848 -9610394 - HUERS-P1 LTR ERV1 -4397 1866 3 2952 178 32 74 chr6 172804850 172805570 -9609672 - LTR8 LTR ERV1 0 691 2 1786 144 13 20 chr6 172806446 172806745 -9608497 - AluJb SINE Alu -15 297 1 408 222 191 16 chr6 172806798 172806924 -9608318 + MER5A DNA MER1_type 42 189 0 21 0 0 0 chr6 172807135 172807156 -9608086 + AT_rich Low_complexity Low_complexity 1 21 0 791 172 0 0 chr6 172807158 172807286 -9607956 - FLAM_C SINE Alu -5 128 1 2258 119 0 6 chr6 172807589 172807900 -9607342 - AluSx SINE Alu -3 309 1 1903 123 69 0 chr6 172808132 172808408 -9606834 - AluSx SINE Alu -17 295 1 2276 91 7 0 chr6 172808566 172808853 -9606389 + AluSx SINE Alu 5 293 -19 2151 130 3 3 chr6 172808853 172809159 -9606083 + AluSx SINE Alu 1 307 -5 359 280 132 39 chr6 172809296 172809553 -9605689 + L2 LINE L2 1877 2157 -1157 404 181 9 209 chr6 172809591 172809806 -9605436 + MER53 DNA DNA 18 189 0 1034 284 141 29 chr6 172809815 172810809 -9604433 + L2 LINE L2 2191 3285 -28 234 0 0 0 chr6 172810818 172810844 -9604398 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 1881 141 0 48 chr6 172811246 172811581 -9603661 - AluSx SINE Alu 0 312 1 231 228 174 22 chr6 172811881 172811973 -9603269 + MIR SINE MIR 34 139 -123 1407 134 172 0 chr6 172812162 172812430 -9602812 - L1MA9 LINE L1 -1 6311 5998 1326 119 0 145 chr6 172812488 172812757 -9602485 + AluJo SINE Alu 1 230 -82 1271 246 64 46 chr6 172813160 172813613 -9601629 - L1ME3A LINE L1 0 6170 5658 1938 121 4 11 chr6 172813613 172813885 -9601357 - AluSx SINE Alu -42 270 1 1271 246 64 46 chr6 172813885 172814103 -9601139 - L1ME3A LINE L1 -512 5658 5446 1005 151 0 0 chr6 172814135 172814308 -9600934 + AluSg/x SINE Alu 137 309 0 349 322 40 7 chr6 172814580 172814732 -9600510 + MIR SINE MIR 4 160 -102 1922 157 0 13 chr6 172815188 172815494 -9599748 + AluJb SINE Alu 1 302 -10 1434 221 57 29 chr6 172815782 172816167 -9599075 + MSTD LTR MaLR 1 396 0 234 0 0 0 chr6 172816194 172816220 -9599022 + (GA)n Simple_repeat Simple_repeat 2 27 0 390 342 13 0 chr6 172816578 172816727 -9598515 - L2 LINE L2 -951 2363 2213 284 273 9 45 chr6 172816963 172817073 -9598169 - L2 LINE L2 -583 2731 2626 297 289 33 16 chr6 172817437 172817558 -9597684 + MIR3 SINE MIR 34 156 -52 540 204 232 0 chr6 172817564 172817706 -9597536 - MER5A DNA MER1_type -1 188 14 1402 156 5 0 chr6 172817826 172818037 -9597205 - AluJb SINE Alu -17 295 84 2734 23 7 0 chr6 172818111 172818416 -9596826 + AluY SINE Alu 1 307 -4 352 246 25 41 chr6 172819636 172819758 -9595484 - L1ME4a LINE L1 -11 6110 5991 1906 199 73 16 chr6 172819775 172820202 -9595040 - MLT1C LTR MaLR 0 467 17 731 311 78 18 chr6 172820284 172820779 -9594463 - L1ME4a LINE L1 -235 5886 5351 1926 141 14 7 chr6 172821241 172821531 -9593711 + AluSx SINE Alu 1 292 -20 300 27 0 0 chr6 172824597 172824634 -9590608 + (TG)n Simple_repeat Simple_repeat 2 38 0 2068 107 0 42 chr6 172826544 172826853 -9588389 - AluSx SINE Alu -16 296 1 217 277 157 12 chr6 172827106 172827189 -9588053 - L2 LINE L2 0 3313 3219 256 283 142 17 chr6 172827529 172827649 -9587593 - L2 LINE L2 -1 3312 3178 814 111 7 35 chr6 172827699 172827843 -9587399 - FRAM SINE Alu -34 142 3 1194 42 14 0 chr6 172828836 172828979 -9586263 + L1PA8A LINE L1 5960 6104 -27 581 313 65 9 chr6 172829111 172829325 -9585917 - MIR SINE MIR -1 261 36 233 338 29 0 chr6 172829360 172829428 -9585814 + L2 LINE L2 3191 3260 -12 717 206 8 0 chr6 172829464 172829590 -9585652 - FLAM_A SINE Alu -6 127 1 2091 113 0 26 chr6 172829595 172829905 -9585337 - AluSq SINE Alu -8 305 4 706 210 128 26 chr6 172831091 172831286 -9583956 - MER20 DNA MER1_type -4 215 1 182 310 71 44 chr6 172832553 172832666 -9582576 - L3 LINE CR1 -10 1567 1452 446 240 126 17 chr6 172833237 172833412 -9581830 - MIR SINE MIR -5 257 64 229 206 65 120 chr6 172833788 172833826 -9581416 - AluYb8 SINE Alu -111 197 158 1513 108 9 5 chr6 172833826 172834048 -9581194 - AluSg/x SINE Alu -5 305 83 229 206 65 120 chr6 172834048 172834101 -9581141 - AluYb8 SINE Alu -150 158 111 394 195 35 23 chr6 172835031 172835118 -9580124 + MER5B DNA MER1_type 6 93 -85 320 244 110 8 chr6 172835321 172835448 -9579794 - MIR SINE MIR -76 186 47 363 228 76 0 chr6 172835865 172835957 -9579285 - L2 LINE L2 -1 3271 3173 1298 158 0 9 chr6 172836428 172836650 -9578592 - AluJb SINE Alu -7 305 86 2072 108 26 13 chr6 172836657 172836962 -9578280 - AluSx SINE Alu -3 309 1 556 215 56 0 chr6 172837630 172837780 -9577462 + MER45A DNA AcHobo 10 178 0 1040 197 31 0 chr6 172838014 172838237 -9577005 + L1MA7 LINE L1 6060 6289 -2 2019 107 3 7 chr6 172838242 172838541 -9576701 + AluSx SINE Alu 1 298 -14 472 390 132 5 chr6 172839096 172839527 -9575715 + L3 LINE CR1 60 545 -1032 200 216 0 0 chr6 172839579 172839616 -9575626 + T-rich Low_complexity Low_complexity 1 37 0 1261 281 39 7 chr6 172839753 172840163 -9575079 - L1ME1 LINE L1 -6 6160 5738 2927 186 16 7 chr6 172841444 172842007 -9573235 - L1MB7 LINE L1 -11 6173 5606 203 255 88 46 chr6 172843029 172843150 -9572092 + MIR SINE MIR 97 222 -40 412 314 100 26 chr6 172843394 172843665 -9571577 + L1ME4a LINE L1 5696 5986 -135 44 20 0 0 chr6 172843688 172843739 -9571503 + AT_rich Low_complexity Low_complexity 1 51 0 2339 73 0 0 chr6 172843786 172844088 -9571154 + AluY SINE Alu 1 302 -9 2066 112 3 0 chr6 172844108 172844404 -9570838 - AluSg SINE Alu -11 299 3 1568 170 50 0 chr6 172844516 172844798 -9570444 - AluJb SINE Alu -16 296 1 23 97 0 0 chr6 172844854 172844926 -9570316 + AT_rich Low_complexity Low_complexity 1 72 0 1052 78 0 21 chr6 172845264 172845406 -9569836 - MER85 DNA T2_type 0 139 1 293 276 90 29 chr6 172845810 172845990 -9569252 + MIR SINE MIR 3 186 -22 330 310 88 44 chr6 172846027 172846301 -9568941 + L1ME4a LINE L1 4881 5166 -980 238 303 22 0 chr6 172846555 172846644 -9568598 + L1ME4a LINE L1 5497 5587 -575 590 321 107 28 chr6 172846646 172846973 -9568269 + L1ME4a LINE L1 5570 5922 -199 8238 145 13 12 chr6 172846981 172848745 -9566497 - L1PA13 LINE L1 -2 6161 4401 2379 66 7 0 chr6 172848745 172849047 -9566195 - AluY SINE Alu -7 304 1 8238 145 13 12 chr6 172849047 172849332 -9565910 - L1PA13 LINE L1 -1762 4401 4134 2077 124 7 3 chr6 172849332 172849639 -9565603 - AluSx SINE Alu -4 308 1 8238 145 13 12 chr6 172849639 172849833 -9565409 - L1PA13 LINE L1 -2029 4134 3942 22 0 0 0 chr6 172849845 172849867 -9565375 + AT_rich Low_complexity Low_complexity 1 22 0 1887 78 4 0 chr6 172850685 172850928 -9564314 + AluSp SINE Alu 55 298 -15 282 310 44 0 chr6 172853718 172853831 -9561411 - MIR SINE MIR -76 186 69 24 0 0 0 chr6 172854246 172854270 -9560972 + AT_rich Low_complexity Low_complexity 1 24 0 1975 96 29 0 chr6 172854270 172854551 -9560691 - AluSx SINE Alu -23 289 1 345 289 84 58 chr6 172855050 172855240 -9560002 + MIR SINE MIR 18 212 -50 2217 106 0 0 chr6 172855307 172855610 -9559632 + AluSx SINE Alu 1 303 -9 2274 79 10 3 chr6 172856053 172856357 -9558885 - AluSq SINE Alu -7 306 1 414 0 0 0 chr6 172857072 172857118 -9558124 + (TG)n Simple_repeat Simple_repeat 2 47 0 460 297 120 14 chr6 172857181 172857531 -9557711 - L1ME4a LINE L1 -197 5924 5538 2682 103 11 3 chr6 172858320 172858689 -9556553 - THE1C LTR MaLR -3 372 1 405 348 82 5 chr6 172858993 172859200 -9556042 - MIR SINE MIR -12 250 28 270 152 15 76 chr6 172859489 172859555 -9555687 - MLT1J2 LTR MaLR -341 109 48 288 299 203 23 chr6 172859969 172860186 -9555056 - L3 LINE CR1 -1030 547 292 1964 110 30 23 chr6 172860417 172860718 -9554524 - AluSx SINE Alu -9 303 1 2752 115 36 7 chr6 172861408 172861824 -9553418 + MSTA LTR MaLR 1 428 0 258 193 50 118 chr6 172861981 172862100 -9553142 - L1M4 LINE L1 -1445 4701 4591 363 298 50 71 chr6 172862101 172862242 -9553000 - MIR SINE MIR -111 151 14 438 310 106 23 chr6 172863314 172863497 -9551745 + MIR SINE MIR 16 213 -49 2071 170 19 0 chr6 172863497 172863856 -9551386 - MER47A DNA MER2_type 0 366 1 500 84 12 0 chr6 172864184 172864267 -9550975 + (TG)n Simple_repeat Simple_repeat 1 84 0 246 241 0 89 chr6 172864359 172864438 -9550804 - L2 LINE L2 -6 3307 3236 465 243 80 43 chr6 172864697 172864902 -9550340 + MIR SINE MIR 34 252 -10 200 321 12 0 chr6 172865619 172865700 -9549542 + (TATATG)n Simple_repeat Simple_repeat 4 85 0 970 211 32 0 chr6 172865751 172865969 -9549273 - L1MD2 LINE L1 0 6359 6135 21 0 0 0 chr6 172868743 172868764 -9546478 + AT_rich Low_complexity Low_complexity 1 21 0 185 326 11 22 chr6 172869033 172869125 -9546117 + MIR SINE MIR 29 119 -143 444 273 27 7 chr6 172870848 172870998 -9544244 - LTR65 LTR ERV1 -507 162 10 1936 141 65 41 chr6 172871837 172872205 -9543037 - LTR10A LTR ERV1 -61 548 172 464 226 145 68 chr6 172872235 172872470 -9542772 - LTR10A LTR ERV1 -356 253 1 440 278 43 9 chr6 172872555 172872670 -9542572 - L2 LINE L2 -4 3268 3150 2155 110 10 0 chr6 172872670 172872978 -9542264 - AluSx SINE Alu -1 311 1 331 216 56 7 chr6 172873412 172873537 -9541705 - MIR SINE MIR -6 256 41 397 292 191 6 chr6 172873756 172873924 -9541318 - MIR SINE MIR -11 251 53 1342 216 153 8 chr6 172875349 172875748 -9539494 + MLT1C LTR MaLR 11 467 0 255 241 78 64 chr6 172876017 172876158 -9539084 - Charlie8 DNA MER1_type -2126 291 149 2425 76 7 3 chr6 172876257 172876559 -9538683 + AluSx SINE Alu 1 303 -9 800 48 9 0 chr6 172877362 172877467 -9537775 + (CCTG)n Simple_repeat Simple_repeat 2 107 0 423 0 0 0 chr6 172877468 172877515 -9537727 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 373 279 10 19 chr6 172877845 172877949 -9537293 + Charlie7 DNA MER1_type 3 105 -2507 37 39 0 0 chr6 172878002 172878053 -9537189 + AT_rich Low_complexity Low_complexity 1 51 0 532 248 8 0 chr6 172878978 172879095 -9536147 - MER63 DNA MER1_type -52 784 41 191 121 0 190 chr6 172880001 172880059 -9535183 - L2 LINE L2 -5 3308 3262 2404 92 23 26 chr6 172880408 172880757 -9534485 + THE1A LTR MaLR 1 348 -7 1138 149 45 10 chr6 172882441 172882539 -9532703 + MER7A DNA MER2_type 2 95 -2943 2224 94 0 11 chr6 172882539 172882856 -9532386 - AluSx SINE Alu 0 314 1 1138 149 45 10 chr6 172882856 172882957 -9532285 + MER7A DNA MER2_type 95 207 -139 1871 129 12 14 chr6 172882966 172883306 -9531936 - MER4A LTR ERV1 -6 658 261 545 129 54 0 chr6 172883306 172883399 -9531843 - MER4A LTR ERV1 -566 98 1 7125 95 51 14 chr6 172883428 172884498 -9530744 - MER4A-int LTR ERV1 -14 6584 5475 * 7564 100 73 14 chr6 172884497 172886213 -9529029 - MER4A-int LTR ERV1 -1457 5141 2736 1138 150 159 9 chr6 172886216 172886436 -9528806 + LTR8 LTR ERV1 5 257 -434 6361 82 42 14 chr6 172886436 172887392 -9527850 - MER4A-int LTR ERV1 -4103 2495 1513 240 35 0 0 chr6 172887392 172887421 -9527821 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 262 358 83 0 chr6 172887551 172887671 -9527571 - L2 LINE L2 0 3272 3143 24 0 0 0 chr6 172888579 172888603 -9526639 + AT_rich Low_complexity Low_complexity 1 24 0 197 254 18 0 chr6 172889786 172889841 -9525401 + L2 LINE L2 3258 3313 0 3378 219 285 11 chr6 172890343 172891484 -9523758 - L1MDa LINE L1 -5071 1469 17 246 62 0 0 chr6 172891570 172891602 -9523640 + (TTA)n Simple_repeat Simple_repeat 2 33 0 267 83 0 0 chr6 172893605 172893641 -9521601 + Alu SINE Alu 2 37 -266 2325 97 0 28 chr6 172893642 172893962 -9521280 + AluSq SINE Alu 1 311 -2 438 287 37 61 chr6 172894009 172894173 -9521069 - L2 LINE L2 -2 3270 3111 1152 249 101 65 chr6 172894177 172894751 -9520491 - MLT1G1 LTR MaLR 0 595 1 1136 239 216 44 chr6 172894753 172895234 -9520008 + MLT1F1 LTR MaLR 3 566 -1 273 248 256 0 chr6 172895634 172895759 -9519483 + MER5A DNA MER1_type 33 189 0 1979 128 186 8 chr6 172897423 172897783 -9517459 - MSTA LTR MaLR -4 424 1 430 192 71 0 chr6 172897894 172897993 -9517249 - MLT2C1 LTR ERVL -291 106 1 383 207 23 0 chr6 172898666 172898753 -9516489 - MIR SINE MIR -126 136 48 1017 171 37 42 chr6 172898838 172899054 -9516188 - MER20 DNA MER1_type -3 216 2 391 255 43 21 chr6 172900295 172900436 -9514806 + L2 LINE L2 3164 3307 -6 2160 110 0 32 chr6 172900507 172900815 -9514427 - AluSx SINE Alu -14 298 1 242 193 18 0 chr6 172902601 172902658 -9512584 + (CA)n Simple_repeat Simple_repeat 2 59 0 837 194 0 0 chr6 172902671 172902851 -9512391 + (CA)n Simple_repeat Simple_repeat 1 180 0 309 26 0 0 chr6 172902872 172902910 -9512332 + (CA)n Simple_repeat Simple_repeat 2 39 0 1339 193 78 3 chr6 172903022 172903317 -9511925 - MER33 DNA MER1_type -7 317 1 332 366 50 25 chr6 172903680 172903961 -9511281 + L1MEd LINE L1 408 695 -5510 1124 285 87 36 chr6 172903982 172904761 -9510481 + L1MEd LINE L1 1002 1820 -4576 2368 107 0 0 chr6 172904889 172905197 -9510045 + AluSx SINE Alu 1 308 -4 183 313 15 0 chr6 172906179 172906246 -9508996 + MIR SINE MIR 191 258 -4 793 164 64 46 chr6 172906922 172907225 -9508017 - L1MC2 LINE L1 -1 6343 5976 627 194 59 35 chr6 172907312 172907482 -9507760 - MER104 DNA MER2_type -3 177 4 247 307 74 18 chr6 172907746 172907909 -9507333 + MIR SINE MIR 85 256 -6 731 164 25 114 chr6 172908648 172908849 -9506393 + MER53 DNA DNA 1 183 -6 1896 114 11 25 chr6 172909496 172909776 -9505466 + AluSx SINE Alu 1 276 -36 441 0 0 0 chr6 172909786 172909835 -9505407 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 355 289 113 0 chr6 172910205 172910347 -9504895 - MIR SINE MIR -78 184 27 220 344 42 0 chr6 172910430 172910526 -9504716 - L2 LINE L2 -247 3025 2926 1110 167 0 0 chr6 172911882 172912056 -9503186 + AluJb SINE Alu 134 307 -5 377 272 51 97 chr6 172912059 172912511 -9502731 - L1MC5 LINE L1 -261 7700 7270 262 314 0 0 chr6 172912503 172912573 -9502669 - L1MC4 LINE L1 -1245 6797 6728 * 772 260 64 21 chr6 172912891 172913218 -9502024 + L2 LINE L2 2364 2704 -610 251 230 247 6 chr6 172913307 172913481 -9501761 + L2 LINE L2 2715 2930 -384 894 109 0 0 chr6 172913586 172913723 -9501519 + (TCCCC)n Simple_repeat Simple_repeat 2 138 0 1990 128 0 0 chr6 172913726 172914000 -9501242 - AluSx SINE Alu -36 276 3 214 208 83 77 chr6 172914786 172914954 -9500288 + (GGGTG)n Simple_repeat Simple_repeat 3 171 0 * 293 232 0 70 chr6 172914900 172915085 -9500157 + (TTAGGG)n Simple_repeat Simple_repeat 1 172 0 * 322 187 121 36 chr6 172914967 172915189 -9500053 + (GGATG)n Simple_repeat Simple_repeat 1 240 0 561 220 84 56 chr6 172915281 172915495 -9499747 - MER106A DNA MER1_type -2 234 15 559 100 22 22 chr6 172915677 172915767 -9499475 + AluJ/FRAM SINE Alu 216 305 -7 25 0 0 0 chr6 172916240 172916265 -9498977 + AT_rich Low_complexity Low_complexity 1 25 0 2372 121 32 16 chr6 172917393 172917772 -9497470 - Tigger2a DNA MER2_type -49 385 1 227 287 93 9 chr6 172917807 172917915 -9497327 - MIR SINE MIR -33 229 113 42046 62 8 3 chr6 172918584 172924695 -9490547 + L1PA5 LINE L1 12 6153 -1 1931 136 59 82 chr6 172925364 172925414 -9489828 + MSTD LTR MaLR 1 51 -345 2329 94 0 35 chr6 172925414 172925732 -9489510 - AluY SINE Alu -4 307 1 1931 136 59 82 chr6 172925732 172926086 -9489156 + MSTD LTR MaLR 51 396 0 342 67 0 0 chr6 172926821 172926866 -9488376 + (TG)n Simple_repeat Simple_repeat 1 45 0 2106 229 129 5 chr6 172926999 172927581 -9487661 - MLT2F LTR ERVL -4 659 6 951 194 0 24 chr6 172927705 172927875 -9487367 + FRAM SINE Alu 1 166 0 346 303 86 72 chr6 172927965 172928255 -9486987 + L2 LINE L2 2569 2862 -452 518 316 102 5 chr6 172928326 172928532 -9486710 - MIR SINE MIR -12 250 25 218 352 63 7 chr6 172928587 172928729 -9486513 + L2 LINE L2 3160 3309 -4 * 267 248 33 91 chr6 172928713 172928834 -9486408 - L2 LINE L2 -18 3254 3141 294 326 167 0 chr6 172929429 172929573 -9485669 - MIR SINE MIR -14 248 81 1927 146 17 7 chr6 172929816 172930103 -9485139 + AluJb SINE Alu 1 290 -22 293 308 111 12 chr6 172931313 172931485 -9483757 - MIR SINE MIR -53 209 21 267 293 12 0 chr6 172932661 172932743 -9482499 - MIR SINE MIR -108 154 72 310 296 101 56 chr6 172934034 172934213 -9481029 + L3b LINE CR1 1275 1461 -122 444 191 64 28 chr6 172934653 172934794 -9480448 - MLT1F1 LTR MaLR 0 567 422 247 309 36 53 chr6 172934841 172935136 -9480106 - MLT1E LTR MaLR -278 289 1 755 193 0 21 chr6 172935232 172935377 -9479865 + FLAM_C SINE Alu 2 143 0 2067 89 0 79 chr6 172937103 172937407 -9477835 + AluSx SINE Alu 26 305 -7 2068 80 59 25 chr6 172937407 172937692 -9477550 + AluSq SINE Alu 1 296 -17 237 264 74 66 chr6 172937925 172938046 -9477196 + L2 LINE L2 3137 3258 -14 226 273 0 0 chr6 172938926 172938981 -9476261 + L2 LINE L2 2491 2545 -769 469 336 34 29 chr6 172939299 172939537 -9475705 - MIR SINE MIR 0 262 24 2097 118 0 0 chr6 172939745 172940024 -9475218 + AluSq SINE Alu 19 297 -16 3772 100 10 4 chr6 172940193 172940701 -9474541 - MER9 LTR ERVK 0 511 1 642 274 41 5 chr6 172940913 172941110 -9474132 - MER58A DNA MER1_type -19 205 2 21 0 0 0 chr6 172941521 172941542 -9473700 + AT_rich Low_complexity Low_complexity 1 21 0 890 111 22 0 chr6 172942465 172942600 -9472642 - MER75 DNA T2_type -188 326 189 494 235 84 53 chr6 172945569 172945766 -9469476 + MIR SINE MIR 40 253 -9 374 317 74 45 chr6 172945977 172946179 -9469063 - MIR SINE MIR 0 262 55 193 323 0 0 chr6 172946913 172946978 -9468264 - MIR SINE MIR -9 253 189 2300 120 13 0 chr6 172947498 172947806 -9467436 + AluSx SINE Alu 1 312 0 246 167 45 15 chr6 172947859 172947925 -9467317 - L1ME4a LINE L1 -4 6117 6050 313 317 0 67 chr6 172952040 172952160 -9463082 - MER5A DNA MER1_type -56 133 22 2383 76 0 10 chr6 172952339 172952643 -9462599 - AluY SINE Alu -10 301 1 481 295 66 18 chr6 172952905 172953071 -9462171 - MIR3 SINE MIR -9 199 26 1762 160 7 46 chr6 172953955 172954262 -9460980 + AluJo SINE Alu 1 295 -17 238 205 0 72 chr6 172954617 172954700 -9460542 + CT-rich Low_complexity Low_complexity 3 79 0 2122 115 31 0 chr6 172955186 172955474 -9459768 + AluSx SINE Alu 1 297 -15 265 179 21 74 chr6 172955660 172955755 -9459487 + L1MB7 LINE L1 6095 6184 0 21 0 0 0 chr6 172959082 172959103 -9456139 + AT_rich Low_complexity Low_complexity 1 21 0 206 292 153 0 chr6 172960211 172960283 -9454959 + L2 LINE L2 3209 3291 -22 365 272 61 41 chr6 172962701 172962848 -9452394 + MIR SINE MIR 65 214 -48 184 156 0 0 chr6 172965568 172965600 -9449642 + L2 LINE L2 3123 3154 -159 225 314 254 8 chr6 172966889 172967153 -9448089 + L3 LINE CR1 186 514 -1063 278 172 52 35 chr6 172967708 172967766 -9447476 + L2 LINE L2 3136 3194 -78 845 261 28 0 chr6 172969117 172969332 -9445910 + MER58A DNA MER1_type 1 221 -3 671 249 167 9 chr6 172969536 172969865 -9445377 + L1M4 LINE L1 3065 3445 -2701 1073 152 40 20 chr6 172969875 172970073 -9445169 + L1P5 LINE L1 1 202 -6661 * 13337 151 62 28 chr6 172970070 172972243 -9442999 + L1P5 LINE L1 635 2732 -4135 963 105 0 0 chr6 172972243 172972367 -9442875 + AluSp/q SINE Alu 176 299 -14 13337 151 62 28 chr6 172972367 172975748 -9439494 + L1P5 LINE L1 2732 6507 -360 390 234 0 53 chr6 172975772 172975866 -9439376 - L1MC4 LINE L1 -1340 6702 6614 2695 70 6 0 chr6 172975963 172976318 -9438924 + L1PB1 LINE L1 5794 6150 -1 5391 189 70 75 chr6 172976344 172976479 -9438763 + L1M4 LINE L1 3442 3576 -2608 252 0 0 0 chr6 172976479 172976507 -9438735 + (CA)n Simple_repeat Simple_repeat 2 29 0 5391 189 70 75 chr6 172976507 172977349 -9437893 + L1M4 LINE L1 3576 4420 -1764 231 36 0 0 chr6 172977349 172977377 -9437865 + (CA)n Simple_repeat Simple_repeat 1 28 0 5391 189 70 75 chr6 172977377 172978573 -9436669 + L1M4 LINE L1 4420 5588 -596 2885 191 91 7 chr6 172978572 172979286 -9435956 + L1MB7 LINE L1 5411 6184 0 * 226 347 59 26 chr6 172980979 172981250 -9433992 + L2 LINE L2 2221 2500 -814 680 195 86 11 chr6 172982317 172982491 -9432751 - MER58A DNA MER1_type 0 224 38 327 324 57 84 chr6 172982990 172983274 -9431968 - L1MC4 LINE L1 -2073 5735 5462 2096 84 7 4 chr6 172983274 172983549 -9431693 + AluSg SINE Alu 30 305 -5 327 324 57 84 chr6 172983549 172983635 -9431607 - L1MC4 LINE L1 -2346 5462 5375 2779 185 65 11 chr6 172983654 172984285 -9430957 - L1MC2 LINE L1 -25 6319 5655 604 195 0 0 chr6 172988604 172988722 -9426520 + L1MA7 LINE L1 6172 6289 -2 300 111 0 0 chr6 172990256 172990301 -9424941 + (TG)n Simple_repeat Simple_repeat 2 46 0 2036 144 3 3 chr6 172991203 172991515 -9423727 + AluJb SINE Alu 1 312 0 248 305 102 68 chr6 172991629 172991806 -9423436 + L2 LINE L2 2904 3086 -186 852 294 17 0 chr6 172991814 172992049 -9423193 + MIR SINE MIR 21 259 -3 317 200 191 0 chr6 172992159 172992274 -9422968 + MER112 DNA MER1_type 115 251 -9 2206 113 3 0 chr6 172992613 172992904 -9422338 - AluSc SINE Alu -14 295 4 2317 103 3 0 chr6 172992905 172993206 -9422036 - AluSp SINE Alu -11 302 1 291 205 39 13 chr6 172993210 172993288 -9421954 + MER103 DNA DNA 80 159 -7 184 335 35 59 chr6 172994250 172994420 -9420822 - L2 LINE L2 -6 3307 3142 198 0 0 0 chr6 172994514 172994536 -9420706 + (T)n Simple_repeat Simple_repeat 1 22 0 289 170 189 75 chr6 172995524 172995630 -9419612 + MER20 DNA MER1_type 1 118 -101 251 214 45 56 chr6 172996764 172996853 -9418389 + MER63 DNA MER1_type 975 1062 0 339 25 0 0 chr6 172998996 172999036 -9416206 + (CAG)n Simple_repeat Simple_repeat 3 42 0 23 0 0 0 chr6 172999172 172999195 -9416047 + AT_rich Low_complexity Low_complexity 1 23 0 1944 107 24 21 chr6 172999255 172999545 -9415697 - AluJo SINE Alu -17 295 5 21 71 0 0 chr6 173000395 173000437 -9414805 + AT_rich Low_complexity Low_complexity 1 42 0 34 55 0 0 chr6 173000807 173000862 -9414380 + AT_rich Low_complexity Low_complexity 1 55 0 302 238 57 38 chr6 173002257 173002362 -9412880 + L1ME4a LINE L1 5988 6094 -27 24 0 0 0 chr6 173004543 173004567 -9410675 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 173005013 173005034 -9410208 + AT_rich Low_complexity Low_complexity 1 21 0 705 187 40 67 chr6 173006385 173006610 -9408632 + MER20 DNA MER1_type 1 219 0 322 195 23 0 chr6 173006618 173006705 -9408537 + MER20 DNA MER1_type 131 219 0 318 207 23 0 chr6 173006713 173006800 -9408442 + MER20 DNA MER1_type 131 219 0 339 184 23 0 chr6 173006808 173006895 -9408347 + MER20 DNA MER1_type 131 219 0 322 195 23 0 chr6 173006903 173006990 -9408252 + MER20 DNA MER1_type 131 219 0 271 250 0 125 chr6 173007577 173007673 -9407569 + MIR SINE MIR 32 115 -93 409 335 77 60 chr6 173008306 173008317 -9406925 - L2 LINE L2 -426 2888 2879 282 95 0 0 chr6 173008317 173008359 -9406883 + (TG)n Simple_repeat Simple_repeat 2 43 0 409 335 77 60 chr6 173008359 173008699 -9406543 - L2 LINE L2 -435 2879 2531 288 175 18 0 chr6 173010571 173010628 -9404614 + MER58 DNA MER1_type 2355 2412 -8 696 244 56 15 chr6 173011325 173011522 -9403720 + MER63A DNA MER1_type 6 210 0 2279 95 0 7 chr6 173012194 173012489 -9402753 - AluSg1 SINE Alu -16 293 1 1386 265 143 16 chr6 173013944 173014709 -9400533 - L2 LINE L2 0 3313 2452 619 241 91 0 chr6 173015927 173016126 -9399116 - MER20 DNA MER1_type 0 219 3 539 277 124 31 chr6 173016909 173017263 -9397979 - HAL1b LINE L1 -558 790 404 2359 89 7 0 chr6 173017717 173018021 -9397221 - AluSp SINE Alu -7 306 1 2238 122 0 0 chr6 173018082 173018385 -9396857 - AluSx SINE Alu -9 303 1 226 178 0 0 chr6 173019933 173019978 -9395264 - L1MC4 LINE L1 -71 7971 7927 267 26 0 0 chr6 173019995 173020033 -9395209 - L1PA10 LINE L1 0 6168 6131 231 227 0 0 chr6 173020489 173020533 -9394709 + L2 LINE L2 3265 3308 -5 227 269 26 26 chr6 173021322 173021400 -9393842 + MLT1L LTR MaLR 2 79 -536 1918 157 3 10 chr6 173021860 173022159 -9393083 + AluJb SINE Alu 1 297 -15 378 119 0 0 chr6 173023544 173023603 -9391639 + U3 snRNA snRNA 5 63 -154 189 74 0 0 chr6 173023648 173023675 -9391567 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 284 279 48 10 chr6 173024770 173024874 -9390368 + L1ME4a LINE L1 5754 5861 -260 393 227 17 58 chr6 173024908 173025080 -9390162 + L1ME4a LINE L1 5951 6115 -6 22 35 0 0 chr6 173026833 173026862 -9388380 + AT_rich Low_complexity Low_complexity 1 29 0 401 311 48 105 chr6 173028877 173029250 -9385992 + L2 LINE L2 2921 3272 0 635 140 0 10 chr6 173029839 173029939 -9385303 + MER4A LTR ERV1 1 99 -565 1924 121 7 30 chr6 173029967 173030264 -9384978 + MER4A LTR ERV1 375 664 0 920 126 226 45 chr6 173031236 173031351 -9383891 + MER46A DNA MER2_type 2 95 -2636 2464 76 0 0 chr6 173031351 173031655 -9383587 - AluY SINE Alu -7 304 1 920 126 226 45 chr6 173031655 173031738 -9383504 + MER46A DNA MER2_type 95 236 0 2195 201 43 10 chr6 173032033 173032541 -9382701 - MER54A LTR ERVL -2 899 79 303 259 0 12 chr6 173033120 173033201 -9382041 - MER116 DNA Mariner 0 80 1 483 293 53 23 chr6 173034524 173034787 -9380455 + HAL1b LINE L1 344 614 -734 1902 136 54 56 chr6 173035454 173035881 -9379361 + L1MB7 LINE L1 5759 6184 0 1677 225 78 111 chr6 173036191 173036392 -9378850 + L1MC5 LINE L1 6555 6761 -1200 2175 113 3 3 chr6 173036392 173036703 -9378539 + AluSx SINE Alu 1 311 -1 1677 225 78 111 chr6 173036703 173037534 -9377708 + L1MC5 LINE L1 6761 7572 -389 22 0 0 0 chr6 173037555 173037577 -9377665 + AT_rich Low_complexity Low_complexity 1 22 0 751 293 95 24 chr6 173037725 173037874 -9377368 + L1ME3A LINE L1 5263 5400 -721 2031 136 0 7 chr6 173037874 173038169 -9377073 + AluSx SINE Alu 1 293 -19 751 293 95 24 chr6 173038169 173038543 -9376699 + L1ME3A LINE L1 5400 5817 -304 492 215 156 44 chr6 173038872 173039116 -9376126 - Charlie8 DNA MER1_type -1006 1411 45 397 182 27 55 chr6 173039141 173039251 -9375991 + MIR SINE MIR 17 123 -139 330 344 32 19 chr6 173039684 173039841 -9375401 - MER5B DNA MER1_type -16 162 4 306 208 200 42 chr6 173039862 173039982 -9375260 + MIR SINE MIR 39 177 -85 3836 208 50 32 chr6 173040380 173041374 -9373868 + L1MC3 LINE L1 6079 7090 -695 421 232 26 29 chr6 173041380 173041495 -9373747 + MLT1F1 LTR MaLR 35 149 -442 1299 155 83 9 chr6 173041495 173041927 -9373315 + L1MD3 LINE L1 7431 7995 0 21 36 0 0 chr6 173042807 173042835 -9372407 + AT_rich Low_complexity Low_complexity 1 28 0 2155 110 0 0 chr6 173042857 173043149 -9372093 + AluSq SINE Alu 1 292 -21 2131 130 0 7 chr6 173043418 173043726 -9371516 + AluSx SINE Alu 1 306 -6 1956 160 138 0 chr6 173043925 173044294 -9370948 + MSTA LTR MaLR 1 420 -8 306 314 47 64 chr6 173044316 173044488 -9370754 - MIR SINE MIR -74 188 20 225 159 0 0 chr6 173044541 173044585 -9370657 + (CA)n Simple_repeat Simple_repeat 2 45 0 591 186 0 0 chr6 173045349 173045446 -9369796 + FLAM_A SINE Alu 24 120 -22 1327 119 5 24 chr6 173045470 173045680 -9369562 - MER2 DNA MER2_type -135 210 5 1781 181 43 3 chr6 173046096 173046421 -9368821 - MER2 DNA MER2_type 0 345 8 226 326 140 37 chr6 173046824 173047152 -9368090 - L3 LINE CR1 -418 1159 798 21 71 0 0 chr6 173048851 173048893 -9366349 + AT_rich Low_complexity Low_complexity 1 42 0 258 264 20 122 chr6 173049028 173049176 -9366066 + MIR3 SINE MIR 14 146 -62 200 320 245 16 chr6 173049516 173049769 -9365473 + L2 LINE L2 1968 2278 -1036 322 250 0 0 chr6 173049775 173049851 -9365391 + HsTC2 DNA Tc2 4 79 -1819 1403 161 14 9 chr6 173049930 173050153 -9365089 - AluJo SINE Alu -88 224 1 263 127 0 18 chr6 173050166 173050221 -9365021 + (TA)n Simple_repeat Simple_repeat 2 55 0 43 56 0 0 chr6 173050347 173050418 -9364824 + AT_rich Low_complexity Low_complexity 1 71 0 34 0 0 0 chr6 173050773 173050807 -9364435 + AT_rich Low_complexity Low_complexity 1 34 0 521 355 29 16 chr6 173051163 173051408 -9363834 - L2 LINE L2 -931 2383 2136 2086 168 101 3 chr6 173052286 173052674 -9362568 + MSTB LTR MaLR 1 426 0 241 194 16 32 chr6 173053512 173053574 -9361668 - MIR3 SINE MIR -6 202 142 186 250 0 0 chr6 173054290 173054346 -9360896 + (CA)n Simple_repeat Simple_repeat 2 57 0 306 0 0 0 chr6 173054369 173054403 -9360839 + (TG)n Simple_repeat Simple_repeat 1 34 0 626 213 6 34 chr6 173055080 173055255 -9359987 + MLT1E1 LTR MaLR 50 268 -386 833 156 0 0 chr6 173055262 173055397 -9359845 + FLAM_A SINE Alu 8 142 0 351 240 44 18 chr6 173056295 173056450 -9358792 - MLT1E1 LTR MaLR -405 249 42 246 261 54 11 chr6 173056729 173056821 -9358421 - Charlie4 DNA MER1_type -6 1955 1860 459 301 43 14 chr6 173057174 173057383 -9357859 + L1ME LINE L1 5501 5715 -406 189 0 0 0 chr6 173058011 173058032 -9357210 + (T)n Simple_repeat Simple_repeat 1 21 0 794 242 84 122 chr6 173058117 173058723 -9356519 + MLT1G LTR MaLR 1 588 -2 213 263 53 32 chr6 173058969 173059064 -9356178 + L2 LINE L2 2995 3091 -181 236 217 17 35 chr6 173059197 173059312 -9355930 + GA-rich Low_complexity Low_complexity 3 115 0 2218 108 3 0 chr6 173059596 173059893 -9355349 + AluSq SINE Alu 3 300 -13 251 288 274 7 chr6 173059937 173060083 -9355159 - MIR SINE MIR -76 186 2 363 270 25 63 chr6 173060304 173060343 -9354899 + MIR SINE MIR 106 145 -117 948 186 166 0 chr6 173060343 173060542 -9354700 - MER46A DNA MER2_type 0 236 5 363 270 25 63 chr6 173060542 173060661 -9354581 + MIR SINE MIR 145 258 -4 328 228 123 9 chr6 173060839 173060953 -9354289 + L1ME4a LINE L1 5992 6118 -3 399 271 10 21 chr6 173061015 173061111 -9354131 + MIR3 SINE MIR 111 205 -3 267 281 41 37 chr6 173061303 173061452 -9353790 + MIR SINE MIR 20 167 -56 21 36 0 0 chr6 173063106 173063134 -9352108 + AT_rich Low_complexity Low_complexity 1 28 0 428 156 44 0 chr6 173063637 173063727 -9351515 + L1MB4 LINE L1 6087 6180 0 23 78 0 0 chr6 173064055 173064106 -9351136 + AT_rich Low_complexity Low_complexity 1 51 0 481 263 128 40 chr6 173064716 173064951 -9350291 + MIR SINE MIR 15 262 0 838 258 105 26 chr6 173066467 173066597 -9348645 + L1MEc LINE L1 703 821 -5575 1471 155 111 30 chr6 173066597 173066895 -9348347 + AluJo SINE Alu 1 312 0 838 258 105 26 chr6 173066895 173067365 -9347877 + L1MEc LINE L1 821 1472 -4924 207 0 0 0 chr6 173067447 173067470 -9347772 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 184 161 0 0 chr6 173067980 173068011 -9347231 + MIR3 SINE MIR 132 162 -46 321 319 126 0 chr6 173068679 173068798 -9346444 + L2 LINE L2 3138 3271 -1 22 0 0 0 chr6 173068875 173068897 -9346345 + AT_rich Low_complexity Low_complexity 1 22 0 391 256 160 47 chr6 173069117 173069428 -9345814 + MLT1G1 LTR MaLR 1 389 -206 282 230 23 33 chr6 173069487 173069579 -9345663 + MLT1H LTR MaLR 473 549 0 216 0 0 0 chr6 173070553 173070577 -9344665 + (A)n Simple_repeat Simple_repeat 1 24 0 2344 68 0 17 chr6 173070878 173071172 -9344070 + AluY SINE Alu 3 291 -20 320 186 75 77 chr6 173071980 173073042 -9342200 + L1MC1 LINE L1 6142 7740 -21 1639 186 3 16 chr6 173073042 173073349 -9341893 + AluJo SINE Alu 1 303 -9 320 186 75 77 chr6 173073349 173073371 -9341871 + L1MC1 LINE L1 7740 7761 0 267 356 30 15 chr6 173073583 173073715 -9341527 - MER5A DNA MER1_type 0 189 56 213 358 45 30 chr6 173073607 173073741 -9341501 + MER5A DNA MER1_type 35 170 -19 * 519 257 74 15 chr6 173073993 173074195 -9341047 - MER113 DNA MER1_type? -307 214 1 256 325 143 8 chr6 173074801 173074927 -9340315 + MIR3 SINE MIR 20 162 -46 203 162 0 0 chr6 173075349 173075386 -9339856 + T-rich Low_complexity Low_complexity 4 40 0 308 280 41 66 chr6 173075717 173075960 -9339282 - L2 LINE L2 -187 3085 2849 2348 103 0 3 chr6 173076623 173076933 -9338309 - AluSc SINE Alu 0 309 1 311 84 12 0 chr6 173076964 173077017 -9338225 + Alu SINE Alu 240 311 0 256 31 0 0 chr6 173077017 173077049 -9338193 + (CAAA)n Simple_repeat Simple_repeat 1 92 0 239 263 0 18 chr6 173077050 173077107 -9338135 + Charlie4 DNA MER1_type 1900 1955 -6 22 0 0 0 chr6 173077458 173077480 -9337762 + AT_rich Low_complexity Low_complexity 1 22 0 2026 107 17 20 chr6 173077598 173077896 -9337346 + AluSx SINE Alu 1 297 -15 1991 293 73 40 chr6 173078088 173079313 -9335929 - L1MEc LINE L1 -5001 1395 131 255 284 30 0 chr6 173080418 173080485 -9334757 - L2 LINE L2 -3 3310 3242 2389 215 104 5 chr6 173080505 173081287 -9333955 + L1MB8 LINE L1 4677 5519 -665 531 172 10 10 chr6 173081289 173081388 -9333854 + L1MB8 LINE L1 5685 5783 -391 2052 153 26 50 chr6 173081395 173081813 -9333429 + MSTB1 LTR MaLR 1 408 -24 2253 98 54 9 chr6 173081838 173082155 -9333087 - L1PA11 LINE L1 -10 6164 5834 1665 182 36 30 chr6 173082209 173082572 -9332670 + L1MB8 LINE L1 5812 6176 -2 2375 165 42 28 chr6 173083297 173083769 -9331473 + MER66B LTR ERV1 8 486 0 378 257 140 34 chr6 173084186 173084365 -9330877 + L1ME3A LINE L1 5545 5742 -379 230 273 34 80 chr6 173085348 173085436 -9329806 + L2 LINE L2 3171 3254 -18 229 302 86 35 chr6 173087047 173087163 -9328079 - L2 LINE L2 -4 3268 3147 229 251 173 37 chr6 173087185 173087274 -9327968 + L1MB2 LINE L1 5350 5426 -695 1666 90 18 0 chr6 173087274 173087497 -9327745 - L1PA10 LINE L1 0 6168 5942 229 251 173 37 chr6 173087497 173087598 -9327644 + L1MB2 LINE L1 5426 5566 -555 2144 148 59 23 chr6 173087637 173088028 -9327214 + L1MB2 LINE L1 5723 6127 -44 2275 86 0 3 chr6 173088029 173088321 -9326921 + AluSc SINE Alu 4 294 -15 261 289 11 0 chr6 173088431 173088521 -9326721 + L1ME3A LINE L1 5807 5897 -267 301 283 89 47 chr6 173088527 173088718 -9326524 + L1ME3A LINE L1 5962 6160 -10 204 318 34 11 chr6 173088755 173088843 -9326399 + L2 LINE L2 2795 2884 -430 233 298 62 31 chr6 173088911 173089072 -9326170 + L1ME LINE L1 5610 5775 -346 478 234 38 71 chr6 173089346 173089530 -9325712 + MER104 DNA MER2_type 1 178 -2 457 232 65 32 chr6 173089790 173089945 -9325297 + MER92C LTR ERV1 3 162 -392 298 229 0 14 chr6 173089999 173090069 -9325173 + MER92C LTR ERV1 484 552 -2 647 198 8 117 chr6 173090487 173090695 -9324547 + MER31-int LTR ERV1 1067 1245 -3691 2007 160 45 9 chr6 173090695 173091027 -9324215 + MER2 DNA MER2_type 1 344 0 647 198 8 117 chr6 173091027 173091066 -9324176 + MER31-int LTR ERV1 1245 1287 -3649 474 146 41 129 chr6 173091116 173091224 -9324018 + MER31-int LTR ERV1 1288 1377 -3559 2233 117 0 0 chr6 173091224 173091524 -9323718 + AluSg SINE Alu 1 300 -10 474 146 41 129 chr6 173091524 173091586 -9323656 + MER31-int LTR ERV1 1377 1443 -3493 326 221 91 78 chr6 173091731 173091870 -9323372 + MER31-int LTR ERV1 1698 1841 -3095 2010 137 3 7 chr6 173091870 173092170 -9323072 + AluJb SINE Alu 1 299 -13 326 221 91 78 chr6 173092170 173092184 -9323058 + MER31-int LTR ERV1 1841 1853 -3083 1056 262 70 65 chr6 173092221 173092994 -9322248 + MER31-int LTR ERV1 2371 3063 -1873 191 204 112 92 chr6 173093127 173093225 -9322017 + MER5B DNA MER1_type 1 100 -78 1260 223 50 95 chr6 173093593 173094055 -9321187 + MER31-int LTR ERV1 3171 3611 -1325 345 223 194 7 chr6 173094079 173094218 -9321024 + L1ME LINE L1 5535 5699 -422 2448 76 3 0 chr6 173094419 173094720 -9320522 + AluY SINE Alu 1 302 -9 189 0 0 0 chr6 173095238 173095259 -9319983 + (A)n Simple_repeat Simple_repeat 1 21 0 335 314 103 6 chr6 173095481 173095637 -9319605 - MIR SINE MIR -71 191 21 297 251 64 82 chr6 173095671 173095842 -9319400 - L2 LINE L2 -40 3273 3106 25 75 0 0 chr6 173096052 173096105 -9319137 + AT_rich Low_complexity Low_complexity 1 53 0 591 114 72 0 chr6 173096142 173096308 -9318934 + (TA)n Simple_repeat Simple_repeat 2 179 0 317 246 23 29 chr6 173096291 173096466 -9318776 + (TATATG)n Simple_repeat Simple_repeat 1 174 0 * 250 284 23 11 chr6 173096482 173096570 -9318672 + L1MC4 LINE L1 6615 6703 -1339 600 258 122 22 chr6 173096988 173097217 -9318025 - MER112 DNA MER1_type -3 253 2 234 253 91 30 chr6 173097633 173097732 -9317510 + MIR3 SINE MIR 93 197 -11 187 328 0 0 chr6 173097732 173097793 -9317449 + L3 LINE CR1 1508 1568 -9 613 224 0 17 chr6 173099105 173099216 -9316026 + FLAM_A SINE Alu 6 115 -23 206 0 69 0 chr6 173099216 173099245 -9315997 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 325 238 104 78 chr6 173099278 173099471 -9315771 - MLT1K LTR MaLR -180 408 211 324 211 28 0 chr6 173099763 173099834 -9315408 - L1ME4a LINE L1 -252 5869 5797 22 0 0 0 chr6 173099847 173099869 -9315373 + AT_rich Low_complexity Low_complexity 1 22 0 29 70 0 0 chr6 173101278 173101335 -9313907 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr6 173101373 173101399 -9313843 + AT_rich Low_complexity Low_complexity 1 26 0 5415 75 16 27 chr6 173102043 173102275 -9312967 + L1PB2 LINE L1 5373 5606 -545 2206 114 0 0 chr6 173102275 173102572 -9312670 + AluSg SINE Alu 1 297 -13 5415 75 16 27 chr6 173102572 173103126 -9312116 + L1PB2 LINE L1 5606 6151 0 787 188 125 0 chr6 173103688 173103864 -9311378 + MIR SINE MIR 10 207 -55 249 108 0 0 chr6 173105236 173105273 -9309969 + (CGG)n Simple_repeat Simple_repeat 1 37 0 222 37 0 0 chr6 173105548 173105575 -9309667 + (CGG)n Simple_repeat Simple_repeat 1 27 0 482 202 11 0 chr6 173106571 173106660 -9308582 - L2 LINE L2 -4 3309 3220 33 56 0 0 chr6 173106707 173106761 -9308481 + AT_rich Low_complexity Low_complexity 1 54 0 240 281 79 108 chr6 173107353 173107492 -9307750 + L2 LINE L2 3137 3271 -1 929 184 82 58 chr6 173107616 173107822 -9307420 - AluJo SINE Alu -101 211 1 1626 93 14 5 chr6 173108264 173108478 -9306764 - AluSg/x SINE Alu -18 292 77 3055 86 49 5 chr6 173109052 173109483 -9305759 - L1PA13 LINE L1 -5 6158 5709 375 265 47 148 chr6 173110224 173110583 -9304659 + L2 LINE L2 2950 3272 0 1513 172 27 15 chr6 173110583 173110845 -9304397 + AluJb SINE Alu 2 266 -46 2249 75 30 7 chr6 173111021 173111316 -9303926 + AluY SINE Alu 1 302 -9 257 325 79 8 chr6 173111805 173111931 -9303311 - L3 LINE CR1 -155 1422 1288 1951 125 68 129 chr6 173112317 173112615 -9302627 - MSTA LTR MaLR 0 428 166 2175 74 0 7 chr6 173112615 173112885 -9302357 - AluY SINE Alu -43 268 1 1951 125 68 129 chr6 173112885 173113042 -9302200 - MSTA LTR MaLR -262 166 1 7591 166 24 3 chr6 173113047 173114316 -9300926 - MSTA-int LTR MaLR -5 1646 352 3027 131 68 24 chr6 173114349 173114897 -9300345 - MER4B LTR ERV1 -38 572 1 2337 113 8 17 chr6 173114899 173115254 -9299988 - MSTA-int LTR MaLR -1226 354 3 2327 152 113 10 chr6 173115256 173115644 -9299598 - MSTA LTR MaLR 0 428 1 416 242 161 31 chr6 173115672 173115833 -9299409 - MER5A DNA MER1_type 0 189 8 1132 165 47 165 chr6 173116023 173116447 -9298795 - MLT1A2 LTR MaLR 0 374 1 885 236 70 48 chr6 173116447 173116593 -9298649 + MLT1B LTR MaLR 42 183 -207 2231 80 7 7 chr6 173116593 173116879 -9298363 + AluY SINE Alu 17 302 -9 885 236 70 48 chr6 173116879 173117019 -9298223 + MLT1B LTR MaLR 183 319 -71 257 51 26 0 chr6 173117019 173117058 -9298184 + (TTG)n Simple_repeat Simple_repeat 2 41 0 2189 103 0 0 chr6 173117060 173117352 -9297890 - AluSg SINE Alu -10 300 9 885 236 70 48 chr6 173117352 173117391 -9297851 + MLT1B LTR MaLR 319 378 -12 638 283 0 28 chr6 173117707 173117887 -9297355 - MER5B DNA MER1_type -3 175 1 191 267 95 67 chr6 173117953 173118058 -9297184 - L2 LINE L2 -20 3252 3145 528 197 16 16 chr6 173118128 173118250 -9296992 - L1MEc LINE L1 -6197 199 78 2038 200 42 27 chr6 173118250 173118701 -9296541 - MLT1C LTR MaLR -2 465 8 263 343 20 10 chr6 173118893 173118995 -9296247 + MER5A DNA MER1_type 63 165 -24 2097 196 2 40 chr6 173119092 173119132 -9296110 - MLT2D LTR ERVL -2 412 372 1599 189 24 99 chr6 173119132 173119229 -9296013 + MER4C LTR ERV1 1 104 -361 1972 98 0 64 chr6 173119229 173119524 -9295718 + AluSg SINE Alu 1 276 -34 218 0 94 0 chr6 173119527 173119559 -9295683 + A-rich Low_complexity Low_complexity 1 35 0 1599 189 24 99 chr6 173119559 173119960 -9295282 + MER4C LTR ERV1 106 465 0 2097 196 2 40 chr6 173119960 173120219 -9295023 - MLT2D LTR ERVL -42 372 131 1688 159 44 3 chr6 173120219 173120514 -9294728 - AluSx SINE Alu -5 307 1 2097 196 2 40 chr6 173120514 173120641 -9294601 - MLT2D LTR ERVL -283 131 1 3735 120 22 9 chr6 173120678 173121230 -9294012 + MER4E LTR ERV1 1 559 -220 357 286 103 32 chr6 173121240 173121366 -9293876 + MER5A DNA MER1_type 19 153 -36 31 82 0 0 chr6 173121387 173121460 -9293782 + AT_rich Low_complexity Low_complexity 1 73 0 1569 189 101 48 chr6 173121885 173122260 -9292982 - MSTD LTR MaLR 0 396 2 219 36 0 0 chr6 173123264 173123292 -9291950 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 273 119 0 0 chr6 173124462 173124504 -9290738 + (TG)n Simple_repeat Simple_repeat 1 42 0 2224 94 0 0 chr6 173124510 173124787 -9290455 - AluSg SINE Alu -33 277 1 1898 150 7 0 chr6 173125186 173125473 -9289769 - AluJb SINE Alu -11 301 13 396 322 108 31 chr6 173126053 173126404 -9288838 - L3b LINE CR1 -77 1506 1129 2567 118 28 6 chr6 173126408 173126763 -9288479 + THE1B LTR MaLR 2 364 0 2509 70 0 13 chr6 173127029 173127344 -9287898 - AluY SINE Alu 0 311 1 1888 157 64 42 chr6 173127839 173128054 -9287188 - MLT1A1 LTR MaLR 0 365 137 2154 119 0 7 chr6 173128054 173128347 -9286895 - AluSx SINE Alu -21 291 1 1888 157 64 42 chr6 173128347 173128488 -9286754 - MLT1A1 LTR MaLR -228 137 1 315 231 13 13 chr6 173128502 173128580 -9286662 + MIR SINE MIR 184 261 -1 39 80 0 0 chr6 173128697 173128785 -9286457 + AT_rich Low_complexity Low_complexity 1 88 0 25 54 6 0 chr6 173128801 173128899 -9286343 + AT_rich Low_complexity Low_complexity 1 53 0 1135 207 42 45 chr6 173128942 173129258 -9285984 - MER33 DNA MER1_type -15 309 1 222 246 29 29 chr6 173129486 173129555 -9285687 - MIR SINE MIR 0 262 194 207 258 152 0 chr6 173129552 173129618 -9285624 - MIR SINE MIR -174 88 13 * 374 318 61 0 chr6 173129659 173129807 -9285435 - MIR SINE MIR -43 219 63 294 255 21 43 chr6 173129907 173130001 -9285241 - L2 LINE L2 -2 3311 3220 831 161 7 36 chr6 173130822 173130995 -9284247 + FLAM_C SINE Alu 1 169 0 937 189 38 0 chr6 173131024 173131183 -9284059 + AluJb SINE Alu 120 284 -28 390 326 32 48 chr6 173132038 173132225 -9283017 - MIR SINE MIR -49 213 30 322 185 25 49 chr6 173133169 173133250 -9281992 - LTR67 LTR ERVL -7 550 472 1151 239 85 52 chr6 173133250 173133710 -9281532 + L1ME3A LINE L1 5674 6148 -22 397 243 44 22 chr6 173133718 173133854 -9281388 - LTR67 LTR ERVL -66 491 353 2710 181 148 13 chr6 173134345 173134973 -9280269 - L1MC3 LINE L1 -13 7772 7060 266 344 40 46 chr6 173137688 173137839 -9277403 + L3 LINE CR1 1079 1228 -349 293 267 22 22 chr6 173138027 173138117 -9277125 + MLT1I LTR MaLR 72 161 -248 496 302 144 26 chr6 173138727 173139114 -9276128 + L1ME4a LINE L1 5426 5859 -262 186 103 0 0 chr6 173139139 173139168 -9276074 + (TA)n Simple_repeat Simple_repeat 1 29 0 452 284 101 55 chr6 173139369 173139767 -9275475 + L1ME4a LINE L1 5518 5933 -188 21 0 0 0 chr6 173139947 173139968 -9275274 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr6 173140015 173140040 -9275202 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2201 268 106 47 chr6 173140073 173141383 -9273859 + L2 LINE L2 1894 3310 -3 215 302 179 0 chr6 173141847 173141953 -9273289 - MIR SINE MIR -48 214 90 1468 165 100 0 chr6 173142062 173142322 -9272920 - AluJb SINE Alu -26 286 1 938 300 56 14 chr6 173142449 173142809 -9272433 - L2 LINE L2 0 3313 2939 4270 84 11 4 chr6 173142820 173143365 -9271877 - L1PA10 LINE L1 -3 6165 5617 514 287 74 48 chr6 173143374 173143604 -9271638 - L2 LINE L2 -520 2794 2559 24 0 0 0 chr6 173144360 173144384 -9270858 + AT_rich Low_complexity Low_complexity 1 24 0 1890 94 52 11 chr6 173144409 173144676 -9270566 - AluSq SINE Alu -35 278 1 506 111 0 0 chr6 173144829 173144901 -9270341 - MSTD LTR MaLR -2 394 323 471 321 23 0 chr6 173145023 173145154 -9270088 - L2 LINE L2 -3 3269 3136 450 0 0 0 chr6 173145236 173145286 -9269956 + (TG)n Simple_repeat Simple_repeat 1 50 0 456 345 113 19 chr6 173145387 173145854 -9269388 + L2 LINE L2 2452 2962 -352 207 0 0 0 chr6 173147637 173147660 -9267582 + (A)n Simple_repeat Simple_repeat 1 23 0 1894 144 0 22 chr6 173148572 173148884 -9266358 + AluJb SINE Alu 8 312 0 2283 113 0 0 chr6 173149272 173149574 -9265668 - AluSx SINE Alu 0 312 11 1831 141 33 27 chr6 173149710 173150009 -9265233 - AluJo SINE Alu -11 301 1 1710 162 3 52 chr6 173150187 173150514 -9264728 + AluJo SINE Alu 1 311 -1 510 310 84 80 chr6 173152779 173153243 -9261999 + L2 LINE L2 2807 3272 0 1568 218 0 3 chr6 173153378 173153685 -9261557 + AluJb SINE Alu 1 306 -6 246 62 0 0 chr6 173154089 173154121 -9261121 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr6 173154136 173154170 -9261072 + AT_rich Low_complexity Low_complexity 1 34 0 540 360 78 14 chr6 173154635 173154929 -9260313 + L3 LINE CR1 370 682 -895 719 215 0 30 chr6 173154951 173155086 -9260156 + FLAM_A SINE Alu 1 131 -2 2198 99 7 3 chr6 173155087 173155389 -9259853 + AluSc SINE Alu 1 303 -6 288 172 0 0 chr6 173155497 173155555 -9259687 + (TG)n Simple_repeat Simple_repeat 2 59 0 301 341 18 22 chr6 173155559 173155782 -9259460 + L1MC4 LINE L1 7601 7822 -220 676 276 142 0 chr6 173155976 173156230 -9259012 + HAL1 LINE L1 1372 1661 -846 701 181 340 0 chr6 173156237 173156452 -9258790 + L1M4 LINE L1 4847 5134 -1012 * 7687 249 48 21 chr6 173156451 173161281 -9253961 + L1M2 LINE L1 1 4700 -1500 180 0 0 0 chr6 173161281 173161301 -9253941 + (CA)n Simple_repeat Simple_repeat 2 21 0 7687 249 48 21 chr6 173161301 173162223 -9253019 + L1M2 LINE L1 4700 5327 -873 1991 154 6 6 chr6 173162223 173162534 -9252708 + AluJo SINE Alu 1 311 -1 7687 249 48 21 chr6 173162534 173162709 -9252533 + L1M2 LINE L1 5327 5496 -704 385 166 63 23 chr6 173162710 173163013 -9252229 + (TG)n Simple_repeat Simple_repeat 1 315 0 542 230 27 27 chr6 173163013 173163200 -9252042 + HAL1 LINE L1 2212 2398 -109 234 158 0 70 chr6 173163218 173163275 -9251967 + HAL1 LINE L1 2450 2502 -5 207 243 14 27 chr6 173164300 173164374 -9250868 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 2175 109 14 0 chr6 173164395 173164679 -9250563 - AluSg SINE Alu -18 292 5 1843 128 7 14 chr6 173164862 173165151 -9250091 - AluJo SINE Alu -19 293 7 23 0 0 0 chr6 173166089 173166112 -9249130 + GC_rich Low_complexity Low_complexity 1 23 0 542 265 41 56 chr6 173167177 173167373 -9247869 + MIR SINE MIR 34 226 -36 6623 116 21 8 chr6 173167378 173168419 -9246823 + L1MA5A LINE L1 5229 6282 -15 2227 127 31 8 chr6 173168438 173168792 -9246450 + L1MA6 LINE L1 5939 6300 0 323 310 146 18 chr6 173168889 173169115 -9246127 + MIR SINE MIR 8 262 0 975 203 42 143 chr6 173170084 173170518 -9244724 - MLT1B LTR MaLR 0 390 1 242 220 0 0 chr6 173170519 173170569 -9244673 - MER102a DNA MER1_type 0 341 292 500 191 186 181 chr6 173171343 173171388 -9243854 + MSTD LTR MaLR 2 45 -351 1860 136 7 0 chr6 173171388 173171660 -9243582 - AluJb SINE Alu -16 296 23 500 191 186 181 chr6 173171660 173172007 -9243235 + MSTD LTR MaLR 45 396 0 1284 221 98 77 chr6 173173090 173173155 -9242087 + MER69 DNA AcHobo 2 64 -1162 1057 259 210 26 chr6 173173155 173173656 -9241586 + MLT1G1 LTR MaLR 3 595 0 1284 221 98 77 chr6 173173656 173174019 -9241223 + MER69 DNA AcHobo 64 439 -787 2503 84 9 0 chr6 173174043 173174366 -9240876 + L1PA13 LINE L1 5836 6161 -2 1111 196 119 13 chr6 173174430 173174741 -9240501 + MER69 DNA AcHobo 2010 2353 -173 716 309 141 35 chr6 173174851 173175150 -9240092 + L2 LINE L2 1944 2210 -1104 925 189 114 10 chr6 173175150 173175351 -9239891 - MER58A DNA MER1_type 0 224 3 716 309 141 35 chr6 173175351 173175652 -9239590 + L2 LINE L2 2210 2608 -706 375 315 83 73 chr6 173175850 173175897 -9239345 + L2 LINE L2 2920 2965 -348 3150 102 4 63 chr6 173175897 173176370 -9238872 - MER83 LTR ERV1 0 448 4 375 315 83 73 chr6 173176370 173176665 -9238577 + L2 LINE L2 2965 3307 -6 222 254 0 30 chr6 173177133 173177200 -9238042 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 634 219 29 73 chr6 173177201 173177406 -9237836 - L1MD2 LINE L1 -16 6343 6148 1446 192 31 4 chr6 173177829 173177956 -9237286 + AluJb SINE Alu 2 124 -188 495 0 0 0 chr6 173177956 173178011 -9237231 + (CA)n Simple_repeat Simple_repeat 2 56 0 1446 192 31 4 chr6 173178011 173178143 -9237099 + AluJb SINE Alu 124 268 -44 237 143 41 0 chr6 173178222 173178283 -9236959 + AluJb SINE Alu 252 314 0 1209 34 17 17 chr6 173178922 173179100 -9236142 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 322 179 36 0 chr6 173179104 173179188 -9236054 + CT-rich Low_complexity Low_complexity 1 87 0 1948 148 21 0 chr6 173179188 173179478 -9235764 - AluSx SINE Alu -15 297 2 3613 143 16 24 chr6 173179794 173180077 -9235165 + Tigger2 DNA MER2_type 79 363 -2355 2182 137 0 0 chr6 173180077 173180377 -9234865 + AluSx SINE Alu 1 300 -12 3613 143 16 24 chr6 173180377 173180764 -9234478 + Tigger2 DNA MER2_type 363 744 -1974 1141 136 102 4 chr6 173180830 173181065 -9234177 + Tigger2 DNA MER2_type 2451 2708 -10 210 71 0 0 chr6 173181661 173181689 -9233553 + (A)n Simple_repeat Simple_repeat 1 28 0 416 281 85 48 chr6 173182816 173183486 -9231756 - L1MEc LINE L1 -4916 1480 786 688 284 167 34 chr6 173184063 173184531 -9230711 + L1MCc LINE L1 363 892 -5531 298 305 17 6 chr6 173185851 173186025 -9229217 - L1MEc LINE L1 -2917 3298 3123 327 262 28 9 chr6 173186039 173186146 -9229096 - Charlie1 DNA MER1_type -17 2744 2636 2515 80 0 6 chr6 173186147 173186460 -9228782 + AluY SINE Alu 1 311 0 2258 100 3 7 chr6 173186470 173186770 -9228472 + AluSc SINE Alu 1 299 -10 814 230 13 26 chr6 173186789 173187015 -9228227 - Charlie1 DNA MER1_type -2536 225 3 1109 286 66 53 chr6 173187094 173188407 -9226835 - L1MEc LINE L1 -3167 3048 1754 2153 134 0 3 chr6 173188407 173188712 -9226530 - AluSx SINE Alu -8 304 1 2133 134 0 7 chr6 173188720 173189026 -9226216 - AluSx SINE Alu -8 304 1 1109 286 66 53 chr6 173189026 173189598 -9225644 - L1MEc LINE L1 -4467 1748 1185 270 0 0 0 chr6 173189598 173189628 -9225614 + (TG)n Simple_repeat Simple_repeat 1 30 0 243 0 0 0 chr6 173189627 173189654 -9225588 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 1109 286 66 53 chr6 173189628 173190150 -9225092 - L1MEc LINE L1 -5030 1185 675 517 365 19 67 chr6 173190262 173190741 -9224501 - L1MEc LINE L1 -5829 567 112 2262 274 54 43 chr6 173191780 173194599 -9220643 + L1MCc LINE L1 365 3503 -3438 1512 139 9 4 chr6 173194600 173194830 -9220412 + AluSg/x SINE Alu 73 303 -7 1659 209 21 8 chr6 173194860 173195234 -9220008 + L1P LINE L1 3499 3877 -2269 5034 265 35 30 chr6 173195287 173195475 -9219767 - L1PA12 LINE L1 -4510 3071 2885 2357 83 0 16 chr6 173195475 173195789 -9219453 - AluSc SINE Alu 0 309 1 5034 265 35 30 chr6 173195789 173197437 -9217805 - L1PA12 LINE L1 -4696 2885 1227 929 178 25 0 chr6 173198004 173198161 -9217081 + AluSg/x SINE Alu 124 284 -26 330 260 19 129 chr6 173198381 173198552 -9216690 - MIR3 SINE MIR -52 156 15 275 146 18 0 chr6 173198573 173198628 -9216614 + GA-rich Low_complexity Low_complexity 2 57 0 1705 200 50 6 chr6 173199086 173199446 -9215796 - MLT1C LTR MaLR -91 376 1 24 96 0 0 chr6 173199714 173199787 -9215455 + AT_rich Low_complexity Low_complexity 1 73 0 264 297 103 17 chr6 173199932 173200107 -9215135 + MER102a DNA MER1_type 136 325 -5 239 279 149 19 chr6 173201620 173201781 -9213461 + MLT1H LTR MaLR 359 540 -9 2195 78 0 4 chr6 173203265 173203535 -9211707 + AluSg SINE Alu 21 289 -21 2915 207 55 17 chr6 173206311 173206372 -9208870 - LTR62 LTR ERVK -2 717 660 4703 32 0 4 chr6 173206372 173206932 -9208310 + LTR6B LTR ERV1 1 558 0 2915 207 55 17 chr6 173206932 173207561 -9207681 - LTR62 LTR ERVK -59 660 1 1524 141 157 85 chr6 173207620 173207997 -9207245 - MER4A LTR ERV1 0 664 261 271 67 22 22 chr6 173207997 173208042 -9207200 - MER4A LTR ERV1 -566 98 54 4457 107 40 26 chr6 173208075 173209057 -9206185 - MER4A-int LTR ERV1 -2 6596 5629 2249 125 3 0 chr6 173209057 173209368 -9205874 - AluSq SINE Alu -1 312 1 4457 107 40 26 chr6 173209368 173209540 -9205702 - MER4A-int LTR ERV1 -969 5629 3749 1363 173 25 0 chr6 173209649 173209892 -9205350 - AluSq SINE Alu -64 249 1 8803 98 64 14 chr6 173209892 173211431 -9203811 - MER4A-int LTR ERV1 -1072 5526 3911 3695 85 223 171 chr6 173211412 173212864 -9202378 - MER4A-int LTR ERV1 -3267 3331 1804 * 1427 91 13 119 chr6 173212862 173213262 -9201980 - MER4A-int LTR ERV1 -4210 1268 504 * 332 118 0 0 chr6 173213260 173213311 -9201931 - MER4A-int LTR ERV1 -5712 886 836 * 2730 135 119 28 chr6 173213801 173214416 -9200826 - MER4A-int LTR ERV1 -5927 671 1 1633 115 163 83 chr6 173214419 173214793 -9200449 - MER4A LTR ERV1 0 664 261 254 89 22 22 chr6 173214793 173214838 -9200404 - MER4A LTR ERV1 -566 98 54 238 75 75 0 chr6 173215621 173215661 -9199581 + L1M4 LINE L1 4807 4849 -1297 249 247 0 56 chr6 173216205 173216294 -9198948 - MER76 LTR ERV 0 688 605 221 329 7 51 chr6 173216615 173216752 -9198490 - L2 LINE L2 -1313 2001 1871 4749 141 13 8 chr6 173217106 173217202 -9198040 - L1PA16 LINE L1 -1 6165 6071 1758 152 35 35 chr6 173217202 173217577 -9197665 + THE1C LTR MaLR 1 375 0 4749 141 13 8 chr6 173217577 173218374 -9196868 - L1PA16 LINE L1 -95 6071 5263 1441 133 72 135 chr6 173218374 173218614 -9196628 - THE1C LTR MaLR 0 375 168 1985 132 7 17 chr6 173218614 173218909 -9196333 - AluSx SINE Alu -20 292 1 1441 133 72 135 chr6 173218909 173219068 -9196174 - THE1C LTR MaLR -207 168 1 4749 141 13 8 chr6 173219068 173219212 -9196030 - L1PA16 LINE L1 -903 5263 5121 2575 259 18 19 chr6 173219207 173220167 -9195075 - L1PA12 LINE L1 -4430 3154 2182 * 396 0 0 0 chr6 173220263 173220307 -9194935 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 281 296 0 0 chr6 173220443 173220541 -9194701 - L1PA12 LINE L1 -5399 2182 2085 505 328 129 35 chr6 173220695 173221231 -9194011 - L1PA12 LINE L1 -6200 1374 789 29 60 0 0 chr6 173221246 173221296 -9193946 + AT_rich Low_complexity Low_complexity 1 50 0 2548 62 0 0 chr6 173222139 173222443 -9192799 - AluY SINE Alu -4 307 4 739 249 43 86 chr6 173222674 173223071 -9192171 - MLT2C1 LTR ERVL 0 397 18 26 30 0 0 chr6 173223160 173223193 -9192049 + AT_rich Low_complexity Low_complexity 1 33 0 222 167 21 21 chr6 173223640 173223688 -9191554 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 1754 183 6 29 chr6 173223699 173224049 -9191193 + MER2 DNA MER2_type 2 343 -1 299 111 0 19 chr6 173224064 173224118 -9191124 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 173224124 173224145 -9191097 + AT_rich Low_complexity Low_complexity 1 21 0 702 283 107 0 chr6 173224590 173224823 -9190419 - MIR SINE MIR -3 259 2 868 198 95 16 chr6 173224984 173225226 -9190016 + L1MB2 LINE L1 5907 6167 -4 216 97 0 0 chr6 173225297 173225328 -9189914 + (A)n Simple_repeat Simple_repeat 1 31 0 418 326 116 22 chr6 173225339 173225563 -9189679 + L2 LINE L2 2713 2957 -357 287 361 92 0 chr6 173225733 173225863 -9189379 - MLT1J LTR MaLR -369 142 1 19140 93 9 9 chr6 173226296 173227469 -9187773 + L1PA8 LINE L1 1572 2744 -3428 2168 115 10 3 chr6 173227469 173227774 -9187468 + AluSc SINE Alu 1 307 -2 19140 93 9 9 chr6 173227774 173230720 -9184522 + L1PA8 LINE L1 2744 5694 -478 3586 70 2 0 chr6 173230924 173231395 -9183847 + L1PA8 LINE L1 5695 6166 -6 931 115 7 14 chr6 173231408 173231556 -9183686 - MER44D DNA MER2_type -134 475 59 233 238 98 16 chr6 173231593 173231715 -9183527 - L1ME3A LINE L1 -55 6115 5984 196 356 0 0 chr6 173234323 173234396 -9180846 - L2 LINE L2 -8 3305 3233 538 186 23 41 chr6 173235211 173235383 -9179859 + L1 LINE L1 3040 3208 -2938 1566 174 42 0 chr6 173237383 173237511 -9177731 + AluSq SINE Alu 1 122 -191 189 0 0 0 chr6 173237511 173237532 -9177710 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1566 174 42 0 chr6 173237532 173237690 -9177552 + AluSq SINE Alu 122 299 -14 2836 141 10 10 chr6 173238208 173238705 -9176537 - L1MA5A LINE L1 -3 6294 5798 2768 139 5 0 chr6 173238714 173239125 -9176117 + MER57B LTR ERV1 14 426 -8 1487 171 37 104 chr6 173239127 173239559 -9175683 - MER57A LTR ERV1 0 403 1 676 205 32 0 chr6 173239566 173239722 -9175520 - L1MA5A LINE L1 -514 5783 5623 1002 163 56 0 chr6 173245514 173245729 -9169513 + L1MA7 LINE L1 6053 6279 -12 1144 125 17 0 chr6 173245891 173246067 -9169175 + AluSg/x SINE Alu 134 312 0 1936 60 48 0 chr6 173246267 173246516 -9168726 - AluY SINE Alu -16 295 35 531 275 131 10 chr6 173247070 173247361 -9167881 + L1MDa LINE L1 9 334 -6206 820 267 118 20 chr6 173247792 173248340 -9166902 + L1MDa LINE L1 3006 3621 -2919 23 0 0 0 chr6 173249652 173249675 -9165567 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr6 173249786 173249822 -9165420 + AT_rich Low_complexity Low_complexity 1 36 0 33 56 0 0 chr6 173250069 173250123 -9165119 + AT_rich Low_complexity Low_complexity 1 54 0 31 26 0 0 chr6 173250207 173250245 -9164997 + AT_rich Low_complexity Low_complexity 1 38 0 1236 322 63 11 chr6 173250572 173251270 -9163972 + MER20B DNA MER1_type 1 734 -49 280 276 61 27 chr6 173251837 173252098 -9163144 + L1MDa LINE L1 4551 4820 -1720 23 78 0 0 chr6 173252435 173252486 -9162756 + AT_rich Low_complexity Low_complexity 1 51 0 280 313 62 34 chr6 173252943 173253122 -9162120 + HAL1 LINE L1 225 408 -2099 287 360 17 52 chr6 173253284 173253517 -9161725 + HAL1 LINE L1 672 896 -1611 776 244 145 50 chr6 173253712 173254162 -9161080 + HAL1 LINE L1 1704 2237 -270 378 100 0 0 chr6 173254162 173254222 -9161020 + (TG)n Simple_repeat Simple_repeat 2 61 0 776 244 145 50 chr6 173254222 173254428 -9160814 + HAL1 LINE L1 2237 2422 -85 21 0 0 0 chr6 173254514 173254535 -9160707 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 173254801 173254822 -9160420 + AT_rich Low_complexity Low_complexity 1 21 0 241 322 0 11 chr6 173255322 173255409 -9159833 + CT-rich Low_complexity Low_complexity 1 86 0 489 236 166 0 chr6 173255558 173255715 -9159527 - MER5A DNA MER1_type 0 189 7 21 82 0 0 chr6 173256042 173256091 -9159151 + AT_rich Low_complexity Low_complexity 1 49 0 1569 120 120 15 chr6 173256955 173257221 -9158021 - AluSg1 SINE Alu -14 295 2 288 268 29 36 chr6 173258304 173258444 -9156798 - L1ME LINE L1 -563 5627 5492 316 276 48 9 chr6 173258671 173258776 -9156466 - L1ME LINE L1 -2015 4200 4092 2133 115 6 6 chr6 173259342 173259654 -9155588 - AluSq SINE Alu -1 312 1 510 297 89 39 chr6 173260869 173261229 -9154013 - L1ME LINE L1 -4101 2295 1918 228 35 0 0 chr6 173261552 173261581 -9153661 + (CATA)n Simple_repeat Simple_repeat 4 32 0 290 45 23 0 chr6 173262131 173262175 -9153067 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1687 35 0 0 chr6 173262175 173262377 -9152865 - L1PA5 LINE L1 -16 6138 5937 3689 115 81 24 chr6 173263620 173264685 -9150557 - MER11A LTR ERVK 0 1236 1 23 0 0 0 chr6 173265125 173265148 -9150094 + AT_rich Low_complexity Low_complexity 1 23 0 1888 123 0 0 chr6 173266428 173266696 -9148546 + AluSx SINE Alu 41 308 -4 2433 61 0 3 chr6 173267878 173268175 -9147067 - AluY SINE Alu -15 296 1 2169 74 17 24 chr6 173268464 173268760 -9146482 - AluSg SINE Alu -16 294 1 27 0 0 0 chr6 173268984 173269011 -9146231 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr6 173269176 173269211 -9146031 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 173269453 173269476 -9145766 + AT_rich Low_complexity Low_complexity 1 23 0 1955 199 33 31 chr6 173269927 173270414 -9144828 - L1MA7 LINE L1 -26 6265 5778 624 202 50 0 chr6 173270403 173270547 -9144695 + L1ME LINE L1 5642 5789 -377 * 292 270 169 0 chr6 173272445 173272534 -9142708 - L2 LINE L2 -35 3237 3134 2744 234 23 11 chr6 173272556 173273200 -9142042 - MER82 DNA MER2_type 0 653 2 21 36 0 0 chr6 173273586 173273614 -9141628 + AT_rich Low_complexity Low_complexity 1 28 0 314 333 0 0 chr6 173274316 173274418 -9140824 - MIR3 SINE MIR -9 199 98 39 22 0 0 chr6 173276268 173276314 -9138928 + AT_rich Low_complexity Low_complexity 1 46 0 3014 160 10 26 chr6 173276806 173277429 -9137813 - MER4B LTR ERV1 0 779 1 3132 171 56 35 chr6 173277560 173278272 -9136970 - LTR8A LTR ERV1 0 727 1 423 329 120 17 chr6 173278374 173278791 -9136451 + L2 LINE L2 2853 3312 -1 2417 128 25 30 chr6 173279268 173279296 -9135946 + MER57A LTR ERV1 1 28 -375 1761 132 82 25 chr6 173279296 173279651 -9135591 + THE1C LTR MaLR 1 375 0 2417 128 25 30 chr6 173279651 173279719 -9135523 + MER57A LTR ERV1 28 95 -308 2089 137 33 36 chr6 173279719 173280084 -9135158 - THE1B LTR MaLR 0 364 1 2417 128 25 30 chr6 173280084 173280391 -9134851 + MER57A LTR ERV1 95 403 0 317 270 36 36 chr6 173280453 173280564 -9134678 - MIR SINE MIR -21 241 131 285 164 30 0 chr6 173280564 173280631 -9134611 - MER57B LTR ERV1 0 434 366 1338 125 31 0 chr6 173280640 173280864 -9134378 - MER57-int LTR ERV1 -28 7509 7279 651 124 16 33 chr6 173280864 173280985 -9134257 - LTR54B LTR ERV1 -367 131 13 13210 112 22 51 chr6 173280989 173282521 -9132721 - MER57-int LTR ERV1 -397 7140 5697 2547 140 165 15 chr6 173282521 173282935 -9132307 - MER4A LTR ERV1 -2 598 89 237 33 0 0 chr6 173282935 173282965 -9132277 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 2547 140 165 15 chr6 173282965 173283070 -9132172 - MER4A LTR ERV1 -511 89 1 13210 112 22 51 chr6 173283070 173283892 -9131350 - MER57-int LTR ERV1 -1840 5697 4853 1219 195 69 84 chr6 173283900 173284494 -9130748 - MER57-int LTR ERV1 -2197 4134 3550 3926 107 7 0 chr6 173284494 173285044 -9130198 - MER41A LTR ERV1 0 554 1 4642 96 28 20 chr6 173285044 173285751 -9129491 - MER41A-int LTR ERV1 -2 5944 5232 * 6750 151 63 63 chr6 173285746 173287194 -9128048 - MER57-int LTR ERV1 -1497 5708 4261 336 98 0 0 chr6 173287194 173287245 -9127997 - AluSc SINE Alu -6 293 243 6750 151 63 63 chr6 173287245 173288152 -9127090 - MER57-int LTR ERV1 -2944 4261 1081 3661 143 40 5 chr6 173288152 173288772 -9126470 - MER57-int LTR ERV1 -5304 642 1 266 167 0 0 chr6 173288855 173288903 -9126339 - MER41B LTR ERV1 0 635 588 * 2033 97 17 0 chr6 173288902 173289201 -9126041 - MER41A LTR ERV1 -250 304 1 459 181 29 35 chr6 173289206 173289377 -9125865 - LTR10C-int LTR ERV1 -3028 2095 1926 363 88 0 0 chr6 173289474 173289531 -9125711 - LTR10C-int LTR ERV1 -3870 2888 2832 321 194 0 41 chr6 173289636 173289734 -9125508 - LTR10C-int LTR ERV1 -2890 3441 3348 511 200 0 0 chr6 173289773 173289868 -9125374 - LTR10C-int LTR ERV1 -2990 3341 3247 267 145 16 0 chr6 173289888 173289950 -9125292 - LTR10C-int LTR ERV1 -2966 2980 2918 * 384 214 73 68 chr6 173289947 173290167 -9125075 - LTR10C-int LTR ERV1 -4545 2053 1833 336 161 0 0 chr6 173290326 173290388 -9124854 - MER34C LTR ERV1 -369 216 155 279 272 0 48 chr6 173290421 173290524 -9124718 - LTR10C-int LTR ERV1 -3681 2650 2553 1766 110 10 20 chr6 173290631 173290931 -9124311 - LTR10C-int LTR ERV1 -6695 842 546 547 97 11 21 chr6 173290933 173291026 -9124216 + MER4A LTR ERV1 1 92 -572 1186 130 50 11 chr6 173291033 173291273 -9123969 + MER4A LTR ERV1 275 582 -82 336 286 9 9 chr6 173291274 173291379 -9123863 - LTR10C-int LTR ERV1 -321 7464 7360 4519 273 46 48 chr6 173291513 173293405 -9121837 - LTR10C-int LTR ERV1 -399 6250 4363 3452 101 29 5 chr6 173293593 173294214 -9121028 - LTR10C-int LTR ERV1 -4359 2537 1902 284 174 139 64 chr6 173294103 173294275 -9120967 - HERVKC4 LTR ERVK -2459 2803 2619 * 281 281 12 0 chr6 173294276 173294358 -9120884 + CT-rich Low_complexity Low_complexity 1 83 0 233 293 0 0 chr6 173294399 173294457 -9120785 + CT-rich Low_complexity Low_complexity 3 60 0 286 211 174 37 chr6 173294967 173295128 -9120114 - LTR10C-int LTR ERV1 -5963 686 504 251 224 224 20 chr6 173295342 173295494 -9119748 - LTR10C-int LTR ERV1 -5963 686 504 21 0 0 0 chr6 173295744 173295765 -9119477 + GC_rich Low_complexity Low_complexity 1 21 0 835 237 38 42 chr6 173296040 173296302 -9118940 - LTR10C-int LTR ERV1 -6361 288 28 4715 50 12 0 chr6 173296328 173296909 -9118333 - LTR10C LTR ERV1 0 591 4 2798 79 18 83 chr6 173296913 173296953 -9118289 - MER4E LTR ERV1 -304 462 421 2147 125 3 0 chr6 173296953 173297249 -9117993 + AluSq SINE Alu 1 297 -16 2798 79 18 83 chr6 173297249 173297700 -9117542 - MER4E LTR ERV1 -345 421 3 2215 136 25 32 chr6 173297788 173298194 -9117048 - MER57A LTR ERV1 0 403 1 294 260 90 20 chr6 173298205 173298305 -9116937 - MIR SINE MIR -140 122 16 650 47 12 0 chr6 173298445 173298530 -9116712 + 5S rRNA rRNA 4 89 -32 332 289 114 7 chr6 173298601 173298750 -9116492 - L1M4 LINE L1 -2309 3837 3673 27 0 0 0 chr6 173299214 173299241 -9116001 + AT_rich Low_complexity Low_complexity 1 27 0 264 228 18 0 chr6 173299345 173299402 -9115840 + MER94 DNA DNA 1 58 -76 24 85 0 0 chr6 173299485 173299544 -9115698 + AT_rich Low_complexity Low_complexity 1 59 0 594 258 82 7 chr6 173299594 173299873 -9115369 - MER114 LTR ERV -169 479 180 323 241 41 122 chr6 173300175 173300469 -9114773 + L1M4 LINE L1 4960 5229 -917 398 220 0 11 chr6 173300896 173300987 -9114255 - MLT1C LTR MaLR 0 467 378 225 0 0 0 chr6 173301381 173301406 -9113836 + (T)n Simple_repeat Simple_repeat 1 25 0 896 130 21 143 chr6 173302139 173302377 -9112865 + L1PA16 LINE L1 5949 6157 -9 2841 174 5 25 chr6 173302639 173302888 -9112354 - LTR60 LTR ERV1 0 586 334 2112 146 30 25 chr6 173302888 173303250 -9111992 - THE1B LTR MaLR 0 364 1 2841 174 5 25 chr6 173303250 173303597 -9111645 - LTR60 LTR ERV1 -252 334 2 895 87 18 11 chr6 173304169 173304349 -9110893 - LTR7 LTR ERV1 -220 230 1 2716 104 7 11 chr6 173304349 173304782 -9110460 - HERVH LTR ERV1 0 7713 7283 9718 185 69 45 chr6 173304786 173307797 -9107445 - HERVH LTR ERV1 -2693 5020 1901 816 208 125 6 chr6 173308996 173309237 -9106005 + L1MB8 LINE L1 5906 6172 -6 2032 157 168 28 chr6 173309253 173309726 -9105516 + LTR36 LTR ERV1 1 559 -52 2477 62 7 7 chr6 173309726 173310035 -9105207 - AluY SINE Alu -2 309 1 2032 157 168 28 chr6 173310035 173310097 -9105145 + LTR36 LTR ERV1 559 611 0 272 285 16 65 chr6 173310178 173310301 -9104941 + MIR SINE MIR 48 164 -98 198 167 0 0 chr6 173310350 173310386 -9104856 + (TATG)n Simple_repeat Simple_repeat 2 37 0 2336 66 0 23 chr6 173311683 173311986 -9103256 - AluY SINE Alu -15 296 1 1990 159 0 6 chr6 173312088 173312402 -9102840 + AluSx SINE Alu 1 312 0 27 49 0 0 chr6 173312448 173312489 -9102753 + AT_rich Low_complexity Low_complexity 1 41 0 214 260 0 0 chr6 173312741 173312791 -9102451 - L2 LINE L2 -1366 1948 1899 645 236 25 6 chr6 173312820 173312981 -9102261 - MSTD LTR MaLR 0 396 233 180 0 0 0 chr6 173313039 173313059 -9102183 + (CA)n Simple_repeat Simple_repeat 2 21 0 832 180 33 16 chr6 173313095 173313278 -9101964 + MLT1A2 LTR MaLR 189 374 0 322 306 127 8 chr6 173314357 173314491 -9100751 - MIR SINE MIR -108 154 5 189 258 0 48 chr6 173314518 173314580 -9100662 - MIR SINE MIR 0 262 204 2201 133 0 6 chr6 173314587 173314947 -9100295 - L1MA6 LINE L1 0 6300 5943 1997 143 11 11 chr6 173314961 173315325 -9099917 - L1MA5A LINE L1 -11 6286 5923 1754 113 3 14 chr6 173315326 173315608 -9099634 - MER50 LTR ERV1 -23 711 433 1119 134 39 65 chr6 173315606 173315838 -9099404 - MER50 LTR ERV1 -500 234 9 * 3745 126 32 5 chr6 173315847 173316532 -9098710 - L1MA5A LINE L1 -372 5925 5225 472 267 52 37 chr6 173316532 173316723 -9098519 - MIR SINE MIR -36 226 33 202 259 12 24 chr6 173317736 173317821 -9097421 + G-rich Low_complexity Low_complexity 6 89 0 275 88 105 18 chr6 173319749 173319806 -9095436 + MSTA LTR MaLR 367 428 0 314 137 60 28 chr6 173319870 173320127 -9095115 + (CA)n Simple_repeat Simple_repeat 1 265 0 887 251 129 27 chr6 173320156 173320598 -9094644 - HAL1 LINE L1 -318 2189 1703 2432 182 96 0 chr6 173320653 173321371 -9093871 - L1MB5 LINE L1 -1 7592 6691 239 111 0 148 chr6 173321412 173321466 -9093776 + MER75 DNA T2_type 469 514 0 824 179 0 7 chr6 173321472 173321617 -9093625 - FRAM SINE Alu -32 144 1 273 207 171 0 chr6 173321619 173321730 -9093512 - L1MB5 LINE L1 -865 6700 6571 2773 147 42 0 chr6 173321749 173322251 -9092991 - L1MA9 LINE L1 -1 6311 5789 227 327 20 10 chr6 173322270 173322371 -9092871 + (CATATA)n Simple_repeat Simple_repeat 6 107 0 5330 198 34 26 chr6 173322394 173323879 -9091363 - L1MB5 LINE L1 -2294 5271 3775 2702 29 3 0 chr6 173323880 173324188 -9091054 - AluY SINE Alu -2 309 1 351 188 88 0 chr6 173324210 173324290 -9090952 - MER46A DNA MER2_type -1 235 149 780 194 31 46 chr6 173324304 173324348 -9090894 - MER46A DNA MER2_type -2538 193 150 1804 123 46 85 chr6 173324348 173324738 -9090504 + THE1C LTR MaLR 1 375 0 780 194 31 46 chr6 173324738 173324889 -9090353 - MER46A DNA MER2_type -2581 150 1 3392 242 54 34 chr6 173324890 173326579 -9088663 - L1MB5 LINE L1 -3810 3755 2030 734 245 73 11 chr6 173326579 173326840 -9088402 - MER63B DNA MER1_type -158 278 2 654 97 52 13 chr6 173328129 173328283 -9086959 + (TAGA)n Simple_repeat Simple_repeat 1 160 0 876 202 29 0 chr6 173333368 173333541 -9081701 + L1MB4 LINE L1 6003 6180 0 458 294 68 25 chr6 173333542 173333705 -9081537 - MIR SINE MIR -3 259 90 227 241 172 52 chr6 173333875 173334049 -9081193 - L1ME LINE L1 -584 5582 5388 558 208 0 27 chr6 173335105 173335288 -9079954 + (TGG)n Simple_repeat Simple_repeat 1 178 0 846 149 23 6 chr6 173335334 173335509 -9079733 + (ATGGTG)n Simple_repeat Simple_repeat 3 180 0 692 214 6 0 chr6 173335524 173335702 -9079540 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 186 103 0 0 chr6 173335749 173335778 -9079464 + (ATG)n Simple_repeat Simple_repeat 3 31 0 365 259 196 14 chr6 173335787 173335930 -9079312 - MIR SINE MIR -75 187 19 376 156 78 33 chr6 173336294 173336384 -9078858 + MLT1K LTR MaLR 486 579 -9 225 256 0 39 chr6 173336315 173336393 -9078849 + LTR67 LTR ERVL 483 557 0 * 336 64 0 0 chr6 173336537 173336584 -9078658 + (TCCC)n Simple_repeat Simple_repeat 1 47 0 902 94 14 0 chr6 173336584 173336722 -9078520 + (TTTC)n Simple_repeat Simple_repeat 4 143 0 2190 91 0 0 chr6 173336728 173337002 -9078240 - AluSg SINE Alu -36 274 1 268 256 57 21 chr6 173337002 173337103 -9078139 - MIR SINE MIR -93 115 13 * 357 257 71 0 chr6 173337089 173337202 -9078040 + MIR SINE MIR 110 230 -32 254 303 81 20 chr6 173337487 173337586 -9077656 - MIR SINE MIR -82 126 22 19969 173 26 9 chr6 173338133 173343359 -9071883 + L1PA14 LINE L1 2272 7595 -4 23 33 0 0 chr6 173345158 173345188 -9070054 + AT_rich Low_complexity Low_complexity 1 30 0 1092 152 5 30 chr6 173345233 173345430 -9069812 - AluJo SINE Alu -1 311 120 196 267 158 0 chr6 173345593 173345698 -9069544 - MIR SINE MIR -63 145 25 249 190 35 17 chr6 173346310 173346368 -9068874 + GA-rich Low_complexity Low_complexity 2 60 0 25 51 0 0 chr6 173347844 173347883 -9067359 + AT_rich Low_complexity Low_complexity 1 39 0 186 103 0 0 chr6 173348503 173348532 -9066710 + (CACCAT)n Simple_repeat Simple_repeat 3 31 0 204 125 0 0 chr6 173348613 173348645 -9066597 + (TG)n Simple_repeat Simple_repeat 1 32 0 186 43 0 0 chr6 173350258 173350281 -9064961 + (T)n Simple_repeat Simple_repeat 1 23 0 2200 127 0 13 chr6 173351155 173351469 -9063773 - AluSq SINE Alu -3 310 1 21 0 0 0 chr6 173351482 173351503 -9063739 + AT_rich Low_complexity Low_complexity 1 21 0 3609 216 57 9 chr6 173351852 173352664 -9062578 + MER21B LTR ERV1 12 862 -1 5056 245 67 49 chr6 173355129 173358163 -9057079 - L1ME2 LINE L1 -8 6225 3139 638 153 76 15 chr6 173358174 173358305 -9056937 - Charlie1 DNA MER1_type 0 2761 2623 * 921 232 22 22 chr6 173358302 173358526 -9056716 - Charlie1 DNA MER1_type -2535 226 3 2074 269 115 51 chr6 173358529 173359790 -9055452 - L1ME2 LINE L1 -3084 3131 1953 243 0 0 0 chr6 173359790 173359817 -9055425 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1827 106 0 0 chr6 173359818 173360053 -9055189 - AluSg SINE Alu -36 274 40 2074 269 115 51 chr6 173360053 173361675 -9053567 - L1ME2 LINE L1 -4261 1954 101 195 164 49 0 chr6 173361837 173361898 -9053344 + (TA)n Simple_repeat Simple_repeat 2 65 0 255 245 11 53 chr6 173361898 173361992 -9053250 - L1MC4 LINE L1 -1339 6703 6614 204 182 0 0 chr6 173361993 173362037 -9053205 + (TA)n Simple_repeat Simple_repeat 1 44 0 2333 253 59 46 chr6 173362853 173364308 -9050934 + L1MCc LINE L1 357 1791 -5150 2210 135 3 0 chr6 173364308 173364619 -9050623 + AluSx SINE Alu 1 312 0 2333 253 59 46 chr6 173364619 173366102 -9049140 + L1MCc LINE L1 1791 3613 -3328 2198 91 3 7 chr6 173366770 173367057 -9048185 - AluSg SINE Alu -24 286 1 207 214 86 71 chr6 173368443 173368513 -9046729 - L2 LINE L2 -9 3263 3193 759 190 7 36 chr6 173368573 173368710 -9046532 - FLAM_A SINE Alu 0 133 1 301 311 0 0 chr6 173369866 173369940 -9045302 - MER5A DNA MER1_type -107 82 9 21 95 0 0 chr6 173371270 173371333 -9043909 + AT_rich Low_complexity Low_complexity 1 63 0 2217 109 7 0 chr6 173371459 173371753 -9043489 + AluSp SINE Alu 2 297 -16 556 275 88 16 chr6 173372415 173372536 -9042706 - MIR SINE MIR -28 234 92 180 0 0 0 chr6 173372536 173372556 -9042686 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 556 275 88 16 chr6 173372556 173372627 -9042615 - MIR SINE MIR -170 92 28 1186 179 182 27 chr6 173373498 173373795 -9041447 - MER2 DNA MER2_type 0 344 2 415 279 100 60 chr6 173374123 173374392 -9040850 - L2 LINE L2 0 3313 3034 241 294 195 30 chr6 173375340 173375626 -9039616 - L2 LINE L2 -208 3064 2719 28 29 0 0 chr6 173376923 173376958 -9038284 + AT_rich Low_complexity Low_complexity 1 35 0 239 375 87 0 chr6 173376967 173377071 -9038171 - MIR3 SINE MIR -23 185 73 245 192 19 0 chr6 173377156 173377208 -9038034 + GA-rich Low_complexity Low_complexity 2 54 0 1278 129 4 49 chr6 173378799 173379024 -9036218 + L1PA16 LINE L1 5952 6166 0 1043 190 75 8 chr6 173381497 173381750 -9033492 + L1MB8 LINE L1 5903 6172 -6 184 318 93 9 chr6 173381904 173382011 -9033231 + MIR SINE MIR 92 207 -55 21 36 0 0 chr6 173382634 173382662 -9032580 + AT_rich Low_complexity Low_complexity 1 28 0 1058 137 174 5 chr6 173384839 173385058 -9030184 - Tigger2 DNA MER2_type -10 2708 2453 4309 149 27 13 chr6 173385114 173385860 -9029382 - Tigger2 DNA MER2_type -1961 757 2 2391 97 0 3 chr6 173385997 173386307 -9028935 + AluSg SINE Alu 1 309 -1 1811 182 0 25 chr6 173387096 173387415 -9027827 - AluJb SINE Alu 0 312 2 546 258 56 24 chr6 173387851 173388064 -9027178 + L1MD3 LINE L1 7772 7991 -4 347 334 79 58 chr6 173388641 173388901 -9026341 - L2 LINE L2 -40 3232 2962 3119 103 11 7 chr6 173388901 173389347 -9025895 + MER83 LTR ERV1 1 448 0 347 334 79 58 chr6 173389347 173389415 -9025827 - L2 LINE L2 -310 2962 2897 624 311 135 28 chr6 173389578 173389876 -9025366 - L2 LINE L2 -706 2608 2343 826 221 75 24 chr6 173389876 173390089 -9025153 + MER58A DNA MER1_type 1 224 0 624 311 135 28 chr6 173390089 173390458 -9024784 - L2 LINE L2 -971 2343 1870 955 223 110 13 chr6 173390492 173390810 -9024432 - MER69 DNA AcHobo -168 2358 2010 2555 80 0 3 chr6 173390866 173391202 -9024040 - L1PA13 LINE L1 0 6163 5829 1349 237 135 6 chr6 173391214 173391568 -9023674 - MER69 DNA AcHobo -2065 461 61 988 275 189 8 chr6 173391568 173392070 -9023172 - MLT1G1 LTR MaLR 0 595 3 233 297 16 0 chr6 173392071 173392135 -9023107 - MER69 DNA AcHobo -2460 66 2 458 234 224 106 chr6 173393273 173393549 -9021693 - MSTD LTR MaLR -37 359 38 1970 148 10 0 chr6 173393549 173393854 -9021388 + AluJb SINE Alu 1 308 -4 458 234 224 106 chr6 173393854 173393898 -9021344 - MSTD LTR MaLR -358 38 1 225 125 83 42 chr6 173394638 173394686 -9020556 + Charlie8 DNA MER1_type 2368 2417 0 1334 179 22 116 chr6 173394687 173394862 -9020380 + MLT1A2 LTR MaLR 1 116 -258 216 67 0 0 chr6 173394862 173394892 -9020350 + (CA)n Simple_repeat Simple_repeat 2 31 0 1334 179 22 116 chr6 173394892 173395129 -9020113 + MLT1A2 LTR MaLR 116 374 0 2548 60 0 0 chr6 173395509 173395807 -9019435 + AluY SINE Alu 1 298 -13 359 296 121 0 chr6 173396506 173396638 -9018604 - MIR SINE MIR -107 155 8 2267 127 14 8 chr6 173396748 173397111 -9018131 - L1MA6 LINE L1 0 6300 5936 1088 145 21 16 chr6 173397122 173397315 -9017927 - L1MA6 LINE L1 -170 6130 5937 6086 136 29 8 chr6 173397325 173398371 -9016871 - L1MA5A LINE L1 -6 6291 5224 455 249 63 48 chr6 173398374 173398563 -9016679 - MIR SINE MIR -38 224 33 43800 34 21 1 chr6 173399275 173405307 -9009935 + L1PA3 LINE L1 1 6155 0 22 0 0 0 chr6 173405318 173405340 -9009902 + AT_rich Low_complexity Low_complexity 1 22 0 2261 96 0 32 chr6 173406724 173407037 -9008205 + AluSx SINE Alu 1 303 -9 5892 128 4 6 chr6 173408874 173409778 -9005464 - L1PA14 LINE L1 -5 7594 6692 16506 192 14 9 chr6 173409780 173409885 -9005357 - L1PA14 LINE L1 -1265 6319 6216 207 0 0 0 chr6 173409885 173409908 -9005334 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 16506 192 14 9 chr6 173409908 173413825 -9001417 - L1PA14 LINE L1 -1368 6216 2272 350 261 70 0 chr6 173414822 173414937 -9000305 - MIR SINE MIR -32 230 108 254 268 87 11 chr6 173414921 173415050 -9000192 + MIR SINE MIR 13 147 -61 * 231 250 0 29 chr6 173415152 173415220 -9000022 - LTR67 LTR ERVL 0 557 492 * 381 155 83 12 chr6 173415161 173415245 -8999997 - MLT1K LTR MaLR -9 579 490 236 222 322 41 chr6 173415431 173415602 -8999640 - MLT1K LTR MaLR -354 234 16 317 270 51 16 chr6 173415634 173415766 -8999476 + MIR SINE MIR 22 152 -56 195 250 0 0 chr6 173415773 173415841 -8999401 + (CACCAT)n Simple_repeat Simple_repeat 1 68 0 667 166 0 43 chr6 173415842 173416029 -8999213 + (CCA)n Simple_repeat Simple_repeat 1 179 0 783 159 7 32 chr6 173416054 173416367 -8998875 + (CACCAT)n Simple_repeat Simple_repeat 1 305 0 397 267 75 20 chr6 173417814 173417960 -8997282 + MIR SINE MIR 106 259 -3 833 207 29 6 chr6 173417961 173418135 -8997107 - L1MB4 LINE L1 0 6180 6003 423 0 0 0 chr6 173419341 173419388 -8995854 + (TTTTA)n Simple_repeat Simple_repeat 4 50 0 1737 139 23 4 chr6 173419392 173419651 -8995591 - AluSg SINE Alu -46 264 1 34 0 0 0 chr6 173419656 173419690 -8995552 + AT_rich Low_complexity Low_complexity 1 34 0 1835 164 7 0 chr6 173419742 173420041 -8995201 - AluSx SINE Alu -7 305 5 21 36 0 0 chr6 173420818 173420846 -8994396 + AT_rich Low_complexity Low_complexity 1 28 0 228 333 58 51 chr6 173421478 173421634 -8993608 - MIR SINE MIR -55 207 51 1765 199 154 18 chr6 173421719 173422166 -8993076 - LTR36 LTR ERV1 0 611 104 187 274 214 19 chr6 173423516 173423782 -8991460 + L2 LINE L2 1640 1957 -1357 2076 158 6 11 chr6 173424521 173424875 -8990367 + LTR60 LTR ERV1 2 353 -233 827 314 71 52 chr6 173425109 173425726 -8989516 + L1PA12 LINE L1 1228 1856 -5725 1642 119 20 12 chr6 173425772 173426016 -8989226 + MLT2A2 LTR ERVL 173 418 -35 393 91 0 45 chr6 173426076 173426142 -8989100 + MLT2A2 LTR ERVL 391 453 0 29184 80 4 4 chr6 173426142 173427276 -8987966 + HERVL-A2 LTR ERVL 1 1134 -4520 2107 141 0 0 chr6 173427276 173427574 -8987668 + AluSc SINE Alu 1 298 -11 29184 80 4 4 chr6 173427574 173430157 -8985085 + HERVL-A2 LTR ERVL 1134 3717 -1937 1639 72 3 118 chr6 173430159 173430463 -8984779 + HERVL-A2 LTR ERVL 5386 5654 0 2725 131 28 1 chr6 173430463 173430875 -8984367 + MLT2A2 LTR ERVL 1 481 -34 603 0 122 0 chr6 173430875 173431022 -8984220 + (TA)n Simple_repeat Simple_repeat 2 166 0 427 44 0 7 chr6 173431025 173431085 -8984157 + MLT2A2 LTR ERVL 402 453 0 1644 219 66 0 chr6 173431102 173431467 -8983775 - L1P LINE L1 -2293 3853 3465 1974 279 67 30 chr6 173431490 173433935 -8981307 - L1MCc LINE L1 -3439 3502 691 235 342 84 37 chr6 173434028 173434218 -8981024 - L1MCc LINE L1 -5857 566 368 587 119 53 21 chr6 173437353 173437597 -8977645 + (TG)n Simple_repeat Simple_repeat 1 252 0 217 327 101 0 chr6 173439180 173439348 -8975894 + L2 LINE L2 2343 2527 -787 327 269 107 13 chr6 173439561 173439710 -8975532 + LTR16A LTR ERVL 283 445 -5 1823 223 98 54 chr6 173540273 173540659 -8874583 + Charlie2a DNA MER1_type 1098 1465 -1397 2285 89 0 58 chr6 173540659 173540985 -8874257 - AluSq SINE Alu -6 307 1 1823 223 98 54 chr6 173540985 173542038 -8873204 + Charlie2a DNA MER1_type 1465 2711 -151 2134 124 7 0 chr6 173542038 173542328 -8872914 + AluSq SINE Alu 1 292 -21 1823 223 98 54 chr6 173542328 173542485 -8872757 + Charlie2a DNA MER1_type 2711 2860 -2 318 237 0 15 chr6 173542907 173542982 -8872260 + MIR SINE MIR 74 146 -62 221 341 12 0 chr6 173543848 173543930 -8871312 - MIR SINE MIR -95 167 85 340 148 0 70 chr6 173544244 173544372 -8870870 + (GGGGA)n Simple_repeat Simple_repeat 5 123 0 405 265 11 33 chr6 173544401 173544582 -8870660 + GA-rich Low_complexity Low_complexity 2 178 0 * 495 206 0 74 chr6 173544457 173544646 -8870596 + G-rich Low_complexity Low_complexity 4 178 0 1814 227 61 25 chr6 173545296 173545820 -8869422 - MER44D DNA MER2_type -7 598 1 2353 100 0 0 chr6 173546519 173546819 -8868423 - AluSc SINE Alu -9 300 1 2502 58 6 10 chr6 173548245 173548556 -8866686 - AluY SINE Alu -1 310 1 823 190 46 35 chr6 173548597 173548771 -8866471 + MER20 DNA MER1_type 41 216 -3 2443 91 0 7 chr6 173549668 173549975 -8865267 + AluSx SINE Alu 3 307 -5 277 289 54 47 chr6 173551231 173551329 -8863913 - MIR SINE MIR -112 150 49 2375 89 3 10 chr6 173551329 173551631 -8863611 + AluSx SINE Alu 1 300 -12 277 289 54 47 chr6 173551631 173551681 -8863561 - MIR SINE MIR -213 49 1 369 0 0 0 chr6 173554099 173554140 -8861102 + (TTCCC)n Simple_repeat Simple_repeat 5 45 0 1285 165 4 60 chr6 173554289 173554538 -8860704 + AluJb SINE Alu 65 299 -13 2164 116 0 0 chr6 173555795 173556096 -8859146 - AluY SINE Alu -10 301 1 369 208 0 0 chr6 173556132 173556204 -8859038 + LTR24B LTR ERV1 4 75 -501 356 244 62 84 chr6 173556341 173556647 -8858595 + LTR24C LTR ERV1 277 635 0 183 205 0 0 chr6 173556647 173556686 -8858556 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 413 273 133 35 chr6 173558768 173558853 -8856389 + MER113 DNA MER1_type? 3 78 -443 2410 88 3 0 chr6 173558853 173559158 -8856084 - AluY SINE Alu -5 306 1 413 273 133 35 chr6 173559158 173559328 -8855914 + MER113 DNA MER1_type? 78 283 -238 278 299 9 9 chr6 173559386 173559493 -8855749 + MER113 DNA MER1_type? 382 488 -33 284 307 161 19 chr6 173559555 173559760 -8855482 - L3 LINE CR1 -350 1227 994 206 61 0 30 chr6 173560213 173560246 -8854996 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 2223 111 16 0 chr6 173560248 173560554 -8854688 - AluSx SINE Alu -1 311 1 27 0 0 0 chr6 173561183 173561210 -8854032 + AT_rich Low_complexity Low_complexity 1 27 0 246 257 68 14 chr6 173561501 173561575 -8853667 + MIR SINE MIR 1 78 -184 1302 218 99 3 chr6 173561693 173561986 -8853256 + MLT2C1 LTR ERVL 20 340 -57 381 216 0 0 chr6 173562015 173562103 -8853139 + CT-rich Low_complexity Low_complexity 1 88 0 536 290 39 85 chr6 173563094 173563346 -8851896 + L2 LINE L2 2996 3231 -82 2403 88 0 0 chr6 173563346 173563640 -8851602 - AluSg SINE Alu -16 294 1 536 290 39 85 chr6 173563640 173563718 -8851524 + L2 LINE L2 3231 3311 -2 2253 101 7 3 chr6 173563887 173564184 -8851058 + AluSc SINE Alu 1 298 -11 2072 168 30 32 chr6 173564375 173564924 -8850318 + MLT2A2 LTR ERVL 1 552 -2 204 200 0 0 chr6 173565864 173565914 -8849328 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 276 111 0 0 chr6 173568307 173568352 -8846890 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 2102 118 0 30 chr6 173569055 173569360 -8845882 - AluSc SINE Alu -13 296 1 333 337 91 18 chr6 173570017 173570403 -8844839 - L2 LINE L2 -939 2375 1962 514 105 0 0 chr6 173572253 173572339 -8842903 - AluSp/q SINE Alu 0 313 228 2115 119 4 0 chr6 173572339 173572617 -8842625 - AluSp SINE Alu -34 279 1 487 252 73 44 chr6 173572744 173572950 -8842292 - L1ME1 LINE L1 -15 6151 5940 1003 286 97 27 chr6 173573626 173574225 -8841017 - L1MEc LINE L1 -4605 2517 1877 * 1047 176 86 0 chr6 173574224 173574366 -8840876 - L1MA9 LINE L1 0 6312 6141 219 36 0 0 chr6 173574366 173574394 -8840848 + (TG)n Simple_repeat Simple_repeat 1 28 0 1047 176 86 0 chr6 173574394 173574484 -8840758 - L1MA9 LINE L1 -171 6141 6060 291 306 22 15 chr6 173574598 173574732 -8840510 - L1MEc LINE L1 -6226 197 63 243 88 0 0 chr6 173575545 173575579 -8839663 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 202 304 69 29 chr6 173575579 173575681 -8839561 - L2 LINE L2 -11 3302 3197 222 356 85 74 chr6 173575698 173575968 -8839274 - L2 LINE L2 -5 3267 2995 261 246 15 15 chr6 173575968 173576033 -8839209 + MLT1J LTR MaLR 2 66 -445 2291 121 0 0 chr6 173576270 173576576 -8838666 - AluSx SINE Alu -6 306 1 1884 199 82 13 chr6 173577356 173577406 -8837836 + MLT1D LTR MaLR 22 67 -438 2013 119 71 17 chr6 173577406 173577758 -8837484 + THE1C LTR MaLR 5 375 0 1884 199 82 13 chr6 173577758 173578160 -8837082 + MLT1D LTR MaLR 67 505 0 487 297 81 38 chr6 173578268 173578477 -8836765 - MIR SINE MIR -5 257 40 2212 300 45 2 chr6 173578833 173579453 -8835789 + MER115 DNA AcHobo 44 690 -3 213 94 0 0 chr6 173579743 173579775 -8835467 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 181 346 75 19 chr6 173579836 173579995 -8835247 + L3 LINE CR1 632 799 -778 201 375 49 0 chr6 173580129 173580273 -8834969 + L3 LINE CR1 968 1118 -459 337 229 12 0 chr6 173580489 173580572 -8834670 + L3 LINE CR1 1345 1428 -149 2831 208 38 70 chr6 173580666 173582147 -8833095 + L1MA4 LINE L1 4848 6274 -26 831 277 14 0 chr6 173582688 173582901 -8832341 + Charlie4 DNA MER1_type 39 254 -1707 2236 95 0 26 chr6 173582901 173583205 -8832037 - AluY SINE Alu -15 296 1 2079 98 58 0 chr6 173583217 173583492 -8831750 - AluSc SINE Alu -18 291 1 459 195 133 59 chr6 173583801 173583820 -8831422 + Charlie4 DNA MER1_type 1721 1737 -224 1491 159 112 0 chr6 173583820 173584078 -8831164 - AluJb SINE Alu -25 287 1 459 195 133 59 chr6 173584078 173584208 -8831034 + Charlie4 DNA MER1_type 1737 1894 -67 2474 64 0 3 chr6 173584208 173584506 -8830736 + AluY SINE Alu 1 297 -14 459 195 133 59 chr6 173584506 173584579 -8830663 + Charlie4 DNA MER1_type 1894 1960 -1 2376 61 27 0 chr6 173585539 173585832 -8829410 + AluSp SINE Alu 1 301 -12 391 266 37 0 chr6 173586440 173586549 -8828693 + MER94 DNA DNA 6 118 -16 1699 170 3 10 chr6 173586866 173587166 -8828076 + AluJb SINE Alu 1 298 -14 21 36 0 0 chr6 173587746 173587774 -8827468 + AT_rich Low_complexity Low_complexity 1 28 0 1003 272 75 16 chr6 173588116 173588502 -8826740 + MLT1I LTR MaLR 1 409 0 679 203 10 147 chr6 173588502 173588690 -8826552 - MER45A DNA AcHobo -16 162 2 242 353 90 8 chr6 173588695 173588828 -8826414 - MIR SINE MIR -70 192 49 2184 98 0 14 chr6 173589626 173589966 -8825276 + AluSc SINE Alu 1 309 0 315 146 0 0 chr6 173590176 173590231 -8825011 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 3716 66 18 2 chr6 173592043 173592500 -8822742 + L1PA11 LINE L1 5706 6169 -5 370 341 27 62 chr6 173592706 173592932 -8822310 - MIR SINE MIR 0 262 45 874 226 73 0 chr6 173592932 173593136 -8822106 - MER20 DNA MER1_type 0 219 1 370 341 27 62 chr6 173593136 173593167 -8822075 - MIR SINE MIR -217 45 14 21 0 0 0 chr6 173594098 173594119 -8821123 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 173594381 173594402 -8820840 + AT_rich Low_complexity Low_complexity 1 21 0 315 309 88 15 chr6 173594785 173594921 -8820321 - MIR3 SINE MIR -60 148 3 321 331 95 16 chr6 173595411 173595653 -8819589 - MIR SINE MIR 0 262 2 208 298 24 48 chr6 173596056 173596140 -8819102 + L2 LINE L2 3191 3272 0 276 243 29 0 chr6 173596145 173596215 -8819027 + CT-rich Low_complexity Low_complexity 1 72 0 391 313 147 26 chr6 173596302 173596689 -8818553 - L2 LINE L2 -124 3189 2761 21 0 0 0 chr6 173596782 173596803 -8818439 + AT_rich Low_complexity Low_complexity 1 21 0 1850 148 21 3 chr6 173596803 173597087 -8818155 - AluJo SINE Alu -22 290 2 2113 118 3 13 chr6 173597581 173597894 -8817348 + AluSx SINE Alu 1 310 -2 282 29 0 0 chr6 173598608 173598643 -8816599 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 * 291 54 0 0 chr6 173598640 173598677 -8816565 + (TC)n Simple_repeat Simple_repeat 1 37 0 2303 107 0 19 chr6 173598677 173598994 -8816248 - AluSx SINE Alu -1 311 1 2386 147 66 0 chr6 173599025 173599421 -8815821 + MSTA LTR MaLR 7 428 0 468 286 44 92 chr6 173599826 173599940 -8815302 + MIR SINE MIR 2 120 -142 2364 85 0 3 chr6 173599940 173600235 -8815007 - AluSx SINE Alu -18 294 1 468 286 44 92 chr6 173600235 173600393 -8814849 + MIR SINE MIR 120 261 -1 565 313 86 21 chr6 173600496 173600787 -8814455 + L3 LINE CR1 616 925 -652 202 365 0 14 chr6 173600823 173600897 -8814345 + L3 LINE CR1 1035 1107 -470 399 330 154 7 chr6 173600963 173601248 -8813994 + L3 LINE CR1 1250 1576 -1 869 295 8 4 chr6 173601537 173601788 -8813454 - MIR SINE MIR -9 253 2 31 0 0 0 chr6 173602467 173602498 -8812744 + AT_rich Low_complexity Low_complexity 1 31 0 329 297 68 14 chr6 173602929 173603077 -8812165 - MIR SINE MIR -17 245 90 1420 189 40 3 chr6 173603273 173603574 -8811668 - MER33 DNA MER1_type -2 322 11 537 301 125 17 chr6 173603670 173603959 -8811283 + MLT1J LTR MaLR 23 342 -169 310 323 135 80 chr6 173604105 173604393 -8810849 + L2 LINE L2 2969 3272 0 1768 214 72 22 chr6 173604548 173604666 -8810576 + MLT1C LTR MaLR 1 112 -355 2639 99 28 3 chr6 173604666 173605021 -8810221 - THE1B LTR MaLR 0 364 1 1768 214 72 22 chr6 173605021 173605347 -8809895 + MLT1C LTR MaLR 112 467 0 216 0 0 0 chr6 173605858 173605882 -8809360 + (TC)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr6 173605881 173605902 -8809340 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 843 284 94 24 chr6 173606732 173607113 -8808129 + MLT1I LTR MaLR 2 409 0 267 275 78 88 chr6 173607382 173607575 -8807667 + Charlie8 DNA MER1_type 1 191 -2226 389 132 226 19 chr6 173607623 173607729 -8807513 + Charlie8 DNA MER1_type 345 472 -1945 412 283 72 56 chr6 173607863 173608043 -8807199 + MER5A DNA MER1_type 7 189 0 6061 155 24 16 chr6 173608444 173609168 -8806074 - L1MC1 LINE L1 0 6333 5594 2304 98 7 0 chr6 173609168 173609475 -8805767 - AluSg SINE Alu -1 309 1 6061 155 24 16 chr6 173609475 173609899 -8805343 - L1MC1 LINE L1 -739 5594 5175 326 319 76 0 chr6 173610477 173610596 -8804646 - MIR SINE MIR -32 230 103 585 332 38 8 chr6 173611112 173611347 -8803895 + MIR SINE MIR 13 254 -8 226 315 93 0 chr6 173611635 173611743 -8803499 - MIR SINE MIR -1 261 144 352 270 98 49 chr6 173611777 173611981 -8803261 - MIR SINE MIR -41 221 8 315 330 34 6 chr6 173612373 173612549 -8802693 + L3 LINE CR1 650 830 -747 10850 25 0 0 chr6 173612827 173614795 -8800447 - L1PA3 LINE L1 0 6155 4188 355 307 226 32 chr6 173615157 173615568 -8799674 + L3 LINE CR1 1079 1569 -8 210 369 0 0 chr6 173616172 173616256 -8798986 + L2 LINE L2 3189 3272 0 722 300 90 67 chr6 173616591 173617057 -8798185 - L3b LINE CR1 -2 1581 1105 2341 95 3 0 chr6 173617151 173617447 -8797795 - AluSp SINE Alu -16 297 1 254 333 30 24 chr6 173617698 173617863 -8797379 - MER102b DNA MER1_type -1 340 175 2423 95 0 7 chr6 173617901 173618207 -8797035 + AluSg SINE Alu 1 304 -6 24 0 0 0 chr6 173618223 173618247 -8796995 + AT_rich Low_complexity Low_complexity 1 24 0 182 339 0 0 chr6 173619667 173619723 -8795519 + L2 LINE L2 3169 3224 -89 2039 107 0 14 chr6 173621534 173621825 -8793417 - AluY SINE Alu -2 309 23 492 309 9 6 chr6 173622063 173622242 -8793000 + MIR SINE MIR 17 192 -65 2136 106 0 63 chr6 173624469 173624844 -8790398 + AluSx SINE Alu 1 354 0 2128 148 3 0 chr6 173624849 173625160 -8790082 + AluSx SINE Alu 1 312 0 2629 65 0 0 chr6 173625762 173626069 -8789173 + AluY SINE Alu 1 307 -4 760 208 7 0 chr6 173626127 173626276 -8788966 + L1MD2 LINE L1 6196 6345 -14 419 69 17 0 chr6 173626692 173626750 -8788492 + AluY SINE Alu 134 192 -119 2172 126 0 10 chr6 173628530 173628831 -8786411 - AluSx SINE Alu -14 298 1 185 326 132 21 chr6 173628883 173629027 -8786215 + L3 LINE CR1 544 703 -874 22 56 0 0 chr6 173632343 173632379 -8782863 + AT_rich Low_complexity Low_complexity 1 36 0 1349 163 0 18 chr6 173632646 173632867 -8782375 - AluJo SINE Alu -9 303 87 276 30 0 0 chr6 173633434 173633467 -8781775 + (TG)n Simple_repeat Simple_repeat 1 33 0 27 29 0 0 chr6 173634135 173634169 -8781073 + AT_rich Low_complexity Low_complexity 1 34 0 565 248 9 9 chr6 173634450 173634563 -8780679 + MER63A DNA MER1_type 89 201 -9 214 118 59 59 chr6 173634847 173634915 -8780327 + A-rich Low_complexity Low_complexity 4 71 0 834 236 114 109 chr6 173635009 173635598 -8779644 - LTR49 LTR ERV1 0 595 4 307 335 64 37 chr6 173635659 173635847 -8779395 + MER91A DNA MER1_type 1 193 -3 216 300 100 25 chr6 173636982 173637102 -8778140 + L3b LINE CR1 1330 1458 -125 251 237 32 73 chr6 173637751 173637876 -8777366 - MIR SINE MIR -62 146 33 2397 90 3 6 chr6 173638809 173639121 -8776121 - AluSp SINE Alu -2 311 1 2655 40 0 0 chr6 173639403 173639701 -8775541 + AluY SINE Alu 1 298 -13 234 0 0 0 chr6 173640445 173640471 -8774771 + (TC)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr6 173640470 173640496 -8774746 + (TA)n Simple_repeat Simple_repeat 1 26 0 302 145 0 14 chr6 173640683 173640752 -8774490 + (TG)n Simple_repeat Simple_repeat 2 69 0 3539 141 27 48 chr6 173641552 173642177 -8773065 + LTR9 LTR ERV1 1 612 0 206 369 62 23 chr6 173642949 173643079 -8772163 + L2 LINE L2 3133 3267 -5 603 286 83 18 chr6 173643790 173644177 -8771065 + MLT1J LTR MaLR 1 470 -41 390 317 21 0 chr6 173644448 173644590 -8770652 - MLT1L LTR MaLR 0 615 471 332 320 66 33 chr6 173644610 173644791 -8770451 - MLT1L LTR MaLR -415 200 14 2539 71 0 0 chr6 173645743 173646054 -8769188 - AluY SINE Alu 0 311 1 231 341 28 22 chr6 173648134 173648316 -8766926 - L1MC/D LINE L1 -1923 5885 5703 21 82 0 0 chr6 173648574 173648623 -8766619 + AT_rich Low_complexity Low_complexity 1 49 0 1031 186 85 0 chr6 173649431 173649619 -8765623 + MER3 DNA MER1_type 6 209 0 2370 97 0 0 chr6 173649842 173650142 -8765100 + AluSx SINE Alu 1 300 -12 2315 184 40 19 chr6 173650247 173650672 -8764570 + Tigger2a DNA MER2_type 1 434 0 24 67 0 0 chr6 173651236 173651281 -8763961 + AT_rich Low_complexity Low_complexity 1 45 0 440 279 59 7 chr6 173651682 173651818 -8763424 - MER69A DNA AcHobo -34 143 1 377 94 0 16 chr6 173652788 173652852 -8762390 + (TTCA)n Simple_repeat Simple_repeat 3 65 0 205 294 0 0 chr6 173653592 173653643 -8761599 + L3 LINE CR1 1524 1574 -3 459 249 158 12 chr6 173654479 173654644 -8760598 - MIR SINE MIR -22 240 52 2774 200 63 11 chr6 173654927 173655466 -8759776 + MLT1F1 LTR MaLR 1 567 0 21 0 0 0 chr6 173657069 173657090 -8758152 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 173657422 173657445 -8757797 + (TG)n Simple_repeat Simple_repeat 2 24 0 1526 298 39 48 chr6 173658082 173659024 -8756218 - L2 LINE L2 -2 3311 2381 294 95 0 0 chr6 173659024 173659066 -8756176 + (TG)n Simple_repeat Simple_repeat 2 43 0 1526 298 39 48 chr6 173659066 173659224 -8756018 - L2 LINE L2 -932 2381 2223 1083 278 271 6 chr6 173659738 173660547 -8754695 - L2 LINE L2 -1208 2106 1084 183 114 0 0 chr6 173660879 173660914 -8754328 + (A)n Simple_repeat Simple_repeat 1 35 0 282 284 52 8 chr6 173660922 173661056 -8754186 - L1ME3A LINE L1 -41 6129 5990 2003 102 8 0 chr6 173661091 173661357 -8753885 - AluSc SINE Alu -6 303 36 518 231 47 12 chr6 173661464 173661633 -8753609 - L1MC5 LINE L1 -476 7485 7311 222 269 22 15 chr6 173661635 173661769 -8753473 + CT-rich Low_complexity Low_complexity 2 136 0 1284 206 199 69 chr6 173661782 173662359 -8752883 - L1MC5 LINE L1 -671 7290 6639 21 0 0 0 chr6 173662606 173662627 -8752615 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr6 173662707 173662738 -8752504 + (CA)n Simple_repeat Simple_repeat 2 32 0 240 362 34 13 chr6 173662789 173662938 -8752304 - HAL1b LINE L1 -708 640 489 207 0 0 0 chr6 173663016 173663039 -8752203 + (TG)n Simple_repeat Simple_repeat 2 24 0 216 163 0 0 chr6 173663039 173663082 -8752160 + (TA)n Simple_repeat Simple_repeat 2 44 0 384 328 122 21 chr6 173663108 173663492 -8751750 - HAL1b LINE L1 -887 461 39 24 0 0 0 chr6 173664109 173664133 -8751109 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 173664228 173664249 -8750993 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 173664478 173664508 -8750734 + AT_rich Low_complexity Low_complexity 1 30 0 1889 169 7 10 chr6 173666583 173666885 -8748357 + AluJo SINE Alu 1 301 -11 1276 343 122 14 chr6 173668297 173669416 -8745826 + L2 LINE L2 69 1307 -2007 290 283 109 0 chr6 173669731 173669823 -8745419 - L2 LINE L2 -10 3303 3202 553 335 139 16 chr6 173669845 173670415 -8744827 + L2 LINE L2 1442 2081 -1233 710 310 238 24 chr6 173670615 173671493 -8743749 + L2 LINE L2 2003 3072 -241 274 298 53 0 chr6 173671534 173671628 -8743614 + L2 LINE L2 3173 3271 -1 3285 270 150 52 chr6 173672512 173673674 -8741568 + L2 LINE L2 63 1469 -1845 2307 126 21 34 chr6 173673674 173674054 -8741188 + THE1C LTR MaLR 1 375 0 3285 270 150 52 chr6 173674054 173674711 -8740531 + L2 LINE L2 1469 2060 -1254 2123 114 3 3 chr6 173674721 173675010 -8740232 - AluSx SINE Alu -23 289 1 881 266 96 63 chr6 173675078 173675326 -8739916 + L2 LINE L2 2851 3122 -191 1806 149 7 30 chr6 173675326 173675341 -8739901 - AluSx SINE Alu -15 297 283 198 0 0 0 chr6 173675341 173675363 -8739879 + (TG)n Simple_repeat Simple_repeat 1 22 0 1806 149 7 30 chr6 173675363 173675648 -8739594 - AluSx SINE Alu -29 283 4 881 266 96 63 chr6 173675648 173675846 -8739396 + L2 LINE L2 3122 3312 -1 225 159 0 0 chr6 173675850 173675894 -8739348 + (TG)n Simple_repeat Simple_repeat 2 45 0 2428 88 0 0 chr6 173676615 173676920 -8738322 + AluY SINE Alu 1 305 -6 207 0 0 0 chr6 173678428 173678451 -8736791 + (A)n Simple_repeat Simple_repeat 1 23 0 * 212 203 34 14 chr6 173678450 173678598 -8736644 + (TA)n Simple_repeat Simple_repeat 1 151 0 200 167 69 0 chr6 173678610 173678682 -8736560 + (TA)n Simple_repeat Simple_repeat 2 78 0 2562 166 14 25 chr6 173678700 173679139 -8736103 + Tigger2a DNA MER2_type 1 434 0 1593 147 31 44 chr6 173679255 173679548 -8735694 - AluJb SINE Alu -23 289 1 239 340 91 14 chr6 173679711 173679964 -8735278 + L3 LINE CR1 1171 1509 -68 2303 183 60 58 chr6 173679968 173680482 -8734760 + MLT2B2 LTR ERVL 1 515 0 2054 125 7 0 chr6 173680683 173680993 -8734249 + AluSq SINE Alu 1 312 0 2660 51 0 0 chr6 173681742 173682053 -8733189 + AluY SINE Alu 1 311 0 369 0 0 0 chr6 173682059 173682100 -8733142 + (TA)n Simple_repeat Simple_repeat 2 42 0 198 0 0 0 chr6 173683705 173683727 -8731515 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 261 239 52 64 chr6 173684653 173684825 -8730417 + L1MC/D LINE L1 5600 5771 -399 608 206 27 96 chr6 173684826 173685045 -8730197 - L2 LINE L2 -6 3307 3104 565 252 26 7 chr6 173685423 173685574 -8729668 - MIR SINE MIR 0 262 109 184 326 35 35 chr6 173685889 173685975 -8729267 - MIR3 SINE MIR -25 183 98 260 321 127 0 chr6 173686255 173686389 -8728853 - L2 LINE L2 0 3313 3163 253 205 110 59 chr6 173686577 173686686 -8728556 + MER110A LTR ERV1 87 170 -298 626 311 65 13 chr6 173686761 173687070 -8728172 + MER110 LTR ERV1 167 491 0 2192 110 0 10 chr6 173688771 173689081 -8726161 - AluSc SINE Alu -2 307 1 1838 108 104 4 chr6 173689225 173689345 -8725897 + AluSx SINE Alu 3 110 -202 315 0 0 0 chr6 173689345 173689380 -8725862 + (CA)n Simple_repeat Simple_repeat 2 36 0 1838 108 104 4 chr6 173689380 173689527 -8725715 + AluSx SINE Alu 110 297 -15 2311 67 0 3 chr6 173690717 173691030 -8724212 - AluY SINE Alu 0 312 1 492 18 0 0 chr6 173691275 173691332 -8723910 + (CA)n Simple_repeat Simple_repeat 2 58 0 256 318 28 19 chr6 173692013 173692120 -8723122 - L1MC4a LINE L1 -1897 5911 5804 1332 193 44 36 chr6 173694346 173694621 -8720621 - AluJo SINE Alu -35 277 1 993 130 0 0 chr6 173695955 173696093 -8719149 - L1PB1 LINE L1 -3 6148 6011 1975 105 24 24 chr6 173696407 173696702 -8718540 + AluSq SINE Alu 1 295 -18 595 171 215 25 chr6 173697117 173697275 -8717967 + MER53 DNA DNA 1 188 -1 1953 148 0 29 chr6 173698079 173698390 -8716852 - AluSx SINE Alu -8 304 3 725 203 105 0 chr6 173698466 173698619 -8716623 + L1MC4 LINE L1 7316 7484 -558 1072 96 0 0 chr6 173698619 173698754 -8716488 + AluSq/x SINE Alu 1 135 -177 2255 106 0 10 chr6 173698754 173699055 -8716187 + AluSx SINE Alu 1 298 -14 1808 231 82 22 chr6 173699056 173699592 -8715650 + L1MC4 LINE L1 7475 8042 0 206 87 130 0 chr6 173699807 173699853 -8715389 + T-rich Low_complexity Low_complexity 2 53 0 1206 230 88 13 chr6 173700223 173700541 -8714701 + MER2 DNA MER2_type 1 342 -2 204 299 180 31 chr6 173700783 173701171 -8714071 - L2 LINE L2 -4 3309 2864 448 264 8 0 chr6 173701282 173701403 -8713839 - L1MD3 LINE L1 -1 7994 7873 473 277 10 72 chr6 173701519 173701714 -8713528 - MIR SINE MIR -28 234 52 382 284 149 27 chr6 173701746 173702074 -8713168 - L2 LINE L2 -641 2673 2306 206 222 50 61 chr6 173702074 173702173 -8713069 - L2 LINE L2 -1297 2017 1920 2154 105 0 41 chr6 173702173 173702488 -8712754 + AluSg SINE Alu 1 302 -8 213 196 0 0 chr6 173702634 173702680 -8712562 + GA-rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr6 173702979 173703001 -8712241 + AT_rich Low_complexity Low_complexity 1 22 0 558 280 99 33 chr6 173703802 173704075 -8711167 - MLT1G LTR MaLR -297 258 1 256 350 71 7 chr6 173704520 173704660 -8710582 + L3b LINE CR1 1271 1419 -164 379 228 131 71 chr6 173705102 173705370 -8709872 + MLT1L LTR MaLR 19 302 -313 246 278 132 47 chr6 173705922 173706134 -8709108 + LTR40b LTR ERVL 135 364 -98 198 0 0 0 chr6 173706140 173706162 -8709080 + (CA)n Simple_repeat Simple_repeat 1 22 0 336 271 0 0 chr6 173706393 173706463 -8708779 + L2 LINE L2 3203 3272 0 1757 212 67 25 chr6 173707112 173707560 -8707682 + MLT1C LTR MaLR 1 467 0 188 253 13 0 chr6 173709046 173709121 -8706121 + CT-rich Low_complexity Low_complexity 3 78 0 1643 188 31 0 chr6 173709468 173709761 -8705481 - MLT1A1 LTR MaLR 0 365 64 658 155 0 0 chr6 173709762 173709859 -8705383 - L1 LINE L1 -2544 3602 3506 2634 27 3 0 chr6 173709889 173710184 -8705058 - AluY SINE Alu -14 297 2 329 162 7 42 chr6 173710408 173710550 -8704692 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 242 243 0 40 chr6 173711136 173711210 -8704032 - L2 LINE L2 -74 3239 3169 2060 201 50 0 chr6 173711481 173711864 -8703378 + MER93a LTR ERV1 1 402 0 280 240 40 120 chr6 173711893 173712018 -8703224 - HAL1 LINE L1 -2350 157 43 1151 170 113 0 chr6 173712232 173712444 -8702798 + MLT1A1 LTR MaLR 130 365 0 1816 163 3 0 chr6 173712969 173713252 -8701990 + AluSx SINE Alu 14 297 -15 27 87 0 0 chr6 173713328 173713397 -8701845 + AT_rich Low_complexity Low_complexity 1 69 0 234 190 0 52 chr6 173713584 173713642 -8701600 + L1MC4 LINE L1 6648 6702 -1340 2212 106 7 0 chr6 173713818 173714110 -8701132 - AluSx SINE Alu -15 297 4 232 379 68 13 chr6 173714512 173714747 -8700495 - L2 LINE L2 -673 2641 2394 1761 285 94 75 chr6 173714752 173716352 -8698890 + HAL1 LINE L1 4 1634 -873 378 204 78 113 chr6 173716436 173716666 -8698576 + HAL1 LINE L1 1877 2098 -409 180 77 0 0 chr6 173716696 173716722 -8698520 + (TG)n Simple_repeat Simple_repeat 2 27 0 2269 93 0 23 chr6 173716842 173717143 -8698099 - AluSx SINE Alu -18 294 1 21 36 0 0 chr6 173717185 173717213 -8698029 + AT_rich Low_complexity Low_complexity 1 28 0 270 204 0 0 chr6 173717226 173717275 -8697967 + HsTC2 DNA Tc2 93 141 -1757 310 232 14 0 chr6 173717281 173717350 -8697892 + HsTC2 DNA Tc2 1289 1358 -540 512 230 81 84 chr6 173717448 173717757 -8697485 + HsTC2 DNA Tc2 1583 1890 -8 194 250 33 17 chr6 173718367 173718427 -8696815 - L2 LINE L2 -2 3311 3251 * 250 368 0 0 chr6 173718397 173718511 -8696731 - MIR SINE MIR -27 235 122 36 70 0 0 chr6 173718725 173718796 -8696446 + AT_rich Low_complexity Low_complexity 1 71 0 333 0 0 0 chr6 173718796 173718833 -8696409 + (CA)n Simple_repeat Simple_repeat 2 38 0 201 328 16 0 chr6 173718836 173718900 -8696342 - L2 LINE L2 -24 3289 3225 13553 121 43 14 chr6 173719603 173720742 -8694500 + Tigger1 DNA MER2_type 1 1234 -1184 2329 105 7 0 chr6 173720742 173721048 -8694194 + AluSx SINE Alu 1 308 -4 13553 121 43 14 chr6 173721048 173722030 -8693212 + Tigger1 DNA MER2_type 1234 2185 -233 390 146 0 0 chr6 173722023 173722078 -8693164 + Tigger1 DNA MER2_type 2362 2416 -2 * 1058 208 106 24 chr6 173722079 173722372 -8692870 - MLT1E2 LTR MaLR -1 625 309 269 171 250 23 chr6 173722522 173722610 -8692632 - MLT1E3 LTR MaLR -516 108 1 357 62 0 0 chr6 173723256 173723304 -8691938 + (GA)n Simple_repeat Simple_repeat 1 48 0 554 114 0 0 chr6 173723376 173723455 -8691787 + MADE1 DNA Mariner 1 79 -1 7551 55 16 8 chr6 173724717 173725708 -8689534 - L1PA7 LINE L1 0 6154 5157 22 0 0 0 chr6 173727541 173727563 -8687679 + AT_rich Low_complexity Low_complexity 1 22 0 438 263 145 28 chr6 173727790 173727969 -8687273 - MIR SINE MIR 0 262 63 1025 176 132 68 chr6 173728010 173728282 -8686960 + MER33 DNA MER1_type 1 295 -2290 2316 96 0 37 chr6 173728282 173728605 -8686637 - AluSx SINE Alu -1 311 1 1025 176 132 68 chr6 173728605 173728628 -8686614 + MER33 DNA MER1_type 295 315 -9 2687 169 31 70 chr6 173729454 173730028 -8685214 - MLT2B3 LTR ERVL -2 552 1 3988 70 0 6 chr6 173733389 173733875 -8681367 + L1PA6 LINE L1 5665 6147 -7 251 303 26 13 chr6 173734322 173734398 -8680844 - MIR3 SINE MIR -45 163 87 2189 177 106 15 chr6 173734948 173735411 -8679831 - LTR22 LTR ERVK -4 505 1 1953 181 70 3 chr6 173736533 173736875 -8678367 - MLT1A1 LTR MaLR 0 365 1 293 93 19 0 chr6 173740058 173740112 -8675130 + (CA)n Simple_repeat Simple_repeat 2 56 0 2712 105 8 3 chr6 173740913 173741286 -8673956 - THE1C LTR MaLR 0 375 1 369 0 0 0 chr6 173742301 173742342 -8672900 + (CA)n Simple_repeat Simple_repeat 2 42 0 306 224 13 13 chr6 173742735 173742811 -8672431 - MIR SINE MIR -114 148 73 190 289 0 0 chr6 173743362 173743407 -8671835 - MIR3 SINE MIR -24 184 140 542 104 9 94 chr6 173744949 173745055 -8670187 + FLAM_C SINE Alu 35 131 -12 1946 135 3 10 chr6 173746442 173746738 -8668504 - AluSx SINE Alu -18 294 1 262 235 147 0 chr6 173746771 173746873 -8668369 - MIR SINE MIR -93 169 53 2680 105 11 3 chr6 173746881 173747042 -8668200 + THE1C LTR MaLR 1 159 -216 2292 116 0 0 chr6 173747042 173747345 -8667897 - AluSx SINE Alu -9 303 1 2680 105 11 3 chr6 173747345 173747553 -8667689 + THE1C LTR MaLR 159 373 -2 3403 154 35 79 chr6 173749275 173749994 -8665248 + LTR8 LTR ERV1 1 687 -4 180 77 0 0 chr6 173750969 173750995 -8664247 + (CAA)n Simple_repeat Simple_repeat 2 27 0 606 278 75 26 chr6 173752962 173753228 -8662014 + MLT1K LTR MaLR 308 586 -2 271 349 9 0 chr6 173753349 173753455 -8661787 - MIR SINE MIR -65 143 37 1311 265 104 8 chr6 173758004 173758543 -8656699 + MLT1G1 LTR MaLR 1 567 -23 344 174 11 0 chr6 173758805 173758897 -8656345 + GA-rich Low_complexity Low_complexity 2 94 0 2313 84 3 19 chr6 173761385 173761695 -8653547 + AluSc SINE Alu 1 305 -4 666 191 8 8 chr6 173762308 173762434 -8652808 - FLAM_A SINE Alu -7 126 1 477 50 0 0 chr6 173764161 173764221 -8651021 + (CA)n Simple_repeat Simple_repeat 2 61 0 227 318 12 0 chr6 173764890 173764975 -8650267 + L2 LINE L2 2195 2280 -1034 215 310 45 32 chr6 173764985 173765140 -8650102 + L2 LINE L2 3037 3193 -120 202 294 130 27 chr6 173765341 173765525 -8649717 + L2 LINE L2 2293 2495 -819 1911 133 43 10 chr6 173766047 173766348 -8648894 + AluSx SINE Alu 1 311 -1 278 229 56 19 chr6 173767998 173768121 -8647121 + MIR SINE MIR 27 156 -52 183 309 85 0 chr6 173768268 173768362 -8646880 + MIR SINE MIR 152 253 -9 222 150 0 0 chr6 173768364 173768404 -8646838 + (CTA)n Simple_repeat Simple_repeat 1 40 0 757 300 174 21 chr6 173768930 173770035 -8645207 + L2 LINE L2 2034 3299 -14 2238 113 0 0 chr6 173770045 173770345 -8644897 + AluSx SINE Alu 2 301 -11 237 310 58 0 chr6 173770914 173771001 -8644241 + MIR SINE MIR 57 148 -114 604 219 109 0 chr6 173771039 173771176 -8644066 - MER46C DNA MER2_type -51 287 136 2675 101 3 14 chr6 173771185 173771553 -8643689 + THE1B LTR MaLR 1 364 0 237 282 45 27 chr6 173771590 173771700 -8643542 + MIR SINE MIR 57 168 -94 877 208 91 0 chr6 173771715 173771912 -8643330 - MER46C DNA MER2_type -51 287 73 2328 104 3 0 chr6 173773091 173773389 -8641853 - AluSg SINE Alu -11 299 1 37 0 0 0 chr6 173773480 173773517 -8641725 + AT_rich Low_complexity Low_complexity 1 37 0 208 246 51 42 chr6 173774322 173774440 -8640802 + MIR SINE MIR 46 164 -98 2042 145 15 21 chr6 173774474 173774811 -8640431 + MER1B DNA MER1_type 3 337 0 192 386 53 9 chr6 173775878 173775992 -8639250 + L2 LINE L2 3154 3272 0 1832 174 11 55 chr6 173777239 173777618 -8637624 + MLT1A1 LTR MaLR 4 365 0 1549 211 71 43 chr6 173778582 173778837 -8636405 - MLT1C LTR MaLR -34 433 159 2366 64 3 3 chr6 173778837 173779143 -8636099 + AluY SINE Alu 1 306 0 1549 211 71 43 chr6 173779143 173779307 -8635935 - MLT1C LTR MaLR -308 159 1 2079 129 0 0 chr6 173780797 173781076 -8634166 + AluSx SINE Alu 1 279 -33 189 0 0 0 chr6 173781079 173781100 -8634142 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1217 272 84 54 chr6 173781613 173782500 -8632742 - L2 LINE L2 -259 3054 2087 23 0 0 0 chr6 173782626 173782649 -8632593 + AT_rich Low_complexity Low_complexity 1 23 0 469 189 10 144 chr6 173782763 173782857 -8632385 + MER104 DNA Tc2 4 58 -1840 380 187 0 37 chr6 173782857 173782964 -8632278 - L1PA16 LINE L1 -6 6160 6058 469 189 10 144 chr6 173782964 173783070 -8632172 + MER104 DNA Tc2 58 177 -3 216 372 44 9 chr6 173783381 173783494 -8631748 + L2 LINE L2 3141 3257 -15 1347 196 18 25 chr6 173784722 173785007 -8630235 + MER58B DNA MER1_type 59 341 0 288 0 0 0 chr6 173786520 173786552 -8628690 + (T)n Simple_repeat Simple_repeat 1 32 0 400 245 55 55 chr6 173786578 173786741 -8628501 + MIR SINE MIR 51 213 -49 2084 131 24 7 chr6 173786872 173787170 -8628072 - AluSx SINE Alu -9 303 1 24 0 0 0 chr6 173787180 173787204 -8628038 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr6 173787860 173787883 -8627359 + (T)n Simple_repeat Simple_repeat 1 23 0 2460 67 3 6 chr6 173788046 173788358 -8626884 - AluY SINE Alu 0 311 1 465 19 0 0 chr6 173789026 173789080 -8626162 + (TA)n Simple_repeat Simple_repeat 2 55 0 1990 141 0 13 chr6 173789260 173789565 -8625677 - AluSx SINE Alu -11 301 1 262 276 110 24 chr6 173789991 173790118 -8625124 - L2 LINE L2 -14 3258 3121 249 139 0 0 chr6 173791669 173791705 -8623537 - U2 snRNA snRNA -152 36 1 29 32 0 48 chr6 173792505 173792567 -8622675 + AT_rich Low_complexity Low_complexity 1 59 0 691 98 125 45 chr6 173792573 173792685 -8622557 - FLAM_C SINE Alu -18 125 5 24 32 0 0 chr6 173793407 173793438 -8621804 + AT_rich Low_complexity Low_complexity 1 31 0 355 206 0 0 chr6 173793923 173793991 -8621251 - MER1B DNA MER1_type -269 68 1 646 190 15 66 chr6 173793994 173794131 -8621111 + L1MC1 LINE L1 6192 6321 -12 441 231 65 0 chr6 173794132 173794240 -8621002 + MER96B DNA MER1_type? 303 417 0 216 204 0 0 chr6 173794355 173794399 -8620843 + A-rich Low_complexity Low_complexity 1 44 0 187 236 146 0 chr6 173794569 173794624 -8620618 + MER5B DNA MER1_type 104 166 -12 180 274 24 60 chr6 173795213 173795297 -8619945 + L2 LINE L2 3164 3244 -69 2415 96 0 6 chr6 173795408 173795722 -8619520 + AluSx SINE Alu 1 312 0 25 51 0 0 chr6 173795734 173795773 -8619469 + AT_rich Low_complexity Low_complexity 1 39 0 2092 100 14 4 chr6 173795778 173796059 -8619183 - AluSg SINE Alu -26 284 1 316 311 44 30 chr6 173796877 173797012 -8618230 - L2 LINE L2 -5 3308 3172 441 0 0 0 chr6 173797489 173797538 -8617704 + (CA)n Simple_repeat Simple_repeat 2 50 0 2061 118 3 10 chr6 173798019 173798315 -8616927 - AluSq SINE Alu -19 294 1 27 62 0 0 chr6 173798317 173798365 -8616877 + AT_rich Low_complexity Low_complexity 1 48 0 2085 194 81 14 chr6 173798796 173799240 -8616002 + MLT2B1 LTR ERVL 1 474 -46 830 84 0 39 chr6 173799262 173799417 -8615825 + (TCCA)n Simple_repeat Simple_repeat 1 149 0 249 161 129 0 chr6 173799417 173799479 -8615763 + MLT2B1 LTR ERVL 484 553 -1 1752 225 37 8 chr6 173799864 173800242 -8615000 + MER82 DNA MER2_type 247 635 -18 1897 137 16 35 chr6 173800928 173801048 -8614194 + AluSx SINE Alu 1 122 -190 254 28 0 28 chr6 173801048 173801084 -8614158 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1897 137 16 35 chr6 173801084 173801276 -8613966 + AluSx SINE Alu 122 307 -5 232 98 73 0 chr6 173802681 173802722 -8612520 - L1MB3 LINE L1 -2 6181 6138 293 338 72 7 chr6 173803072 173803211 -8612031 + L3 LINE CR1 1332 1479 -98 443 234 106 21 chr6 173803216 173803357 -8611885 + MER5B DNA MER1_type 26 178 0 281 302 161 36 chr6 173804108 173804300 -8610942 + L3b LINE CR1 1271 1486 -97 2586 224 113 44 chr6 173806742 173808156 -8607086 + L1ME1 LINE L1 4601 6122 -44 315 397 37 16 chr6 173808477 173808666 -8606576 + L2 LINE L2 2853 3045 -227 2444 161 22 28 chr6 173810575 173811034 -8604208 + L1MB3 LINE L1 5727 6182 -1 969 238 27 42 chr6 173811042 173811374 -8603868 + L1MC/D LINE L1 5004 5330 -816 1171 167 58 35 chr6 173811374 173811631 -8603611 + AluJo SINE Alu 50 312 0 771 244 17 0 chr6 173811632 173811804 -8603438 + L1MC/D LINE L1 5341 5515 -727 331 273 62 110 chr6 173811874 173812123 -8603119 + L2 LINE L2 2974 3233 -80 189 0 0 0 chr6 173812123 173812144 -8603098 + (TC)n Simple_repeat Simple_repeat 2 22 0 2203 126 10 0 chr6 173812150 173812459 -8602783 - AluSx SINE Alu 0 312 1 331 273 62 110 chr6 173812459 173812558 -8602684 + L2 LINE L2 3238 3312 -1 501 314 6 13 chr6 173813202 173813361 -8601881 - MER5B DNA MER1_type -20 158 1 2123 153 55 0 chr6 173813459 173813805 -8601437 - MER47A DNA MER2_type -1 365 1 255 163 0 20 chr6 173813909 173813958 -8601284 + MIR SINE MIR 110 157 -105 210 310 93 16 chr6 173814582 173814711 -8600531 + L2 LINE L2 2979 3117 -155 1754 104 116 0 chr6 173814900 173815159 -8600083 - AluSx SINE Alu -21 291 3 21 0 0 0 chr6 173816418 173816439 -8598803 + AT_rich Low_complexity Low_complexity 1 21 0 281 293 115 32 chr6 173816959 173817116 -8598126 - MIR SINE MIR -44 218 49 581 206 131 38 chr6 173817239 173817399 -8597843 + MER3 DNA MER1_type 29 203 -6 254 271 0 0 chr6 173818549 173818608 -8596634 + Tigger5 DNA MER2_type 2 60 -2263 289 226 0 0 chr6 173818618 173818680 -8596562 - Tigger5 DNA MER2_type -3 2320 2259 * 453 179 0 24 chr6 173818671 173818755 -8596487 + Tigger5 DNA MER2_type 2242 2323 0 812 144 0 43 chr6 173819081 173819268 -8595974 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 206 231 0 0 chr6 173819268 173819307 -8595935 + CT-rich Low_complexity Low_complexity 1 39 0 2098 168 37 33 chr6 173819863 173820420 -8594822 + MLT2A2 LTR ERVL 2 554 0 663 320 24 20 chr6 173820720 173821017 -8594225 - L3 LINE CR1 -33 1544 1247 2529 214 131 70 chr6 173821100 173821895 -8593347 - MER21B LTR ERV1 -3 860 18 217 282 135 53 chr6 173821913 173822044 -8593198 - L3 LINE CR1 -355 1222 1072 2720 107 6 3 chr6 173822044 173822407 -8592835 + THE1B LTR MaLR 1 364 0 217 282 135 53 chr6 173822407 173822445 -8592797 - L3 LINE CR1 -505 1072 1039 1490 207 65 28 chr6 173822560 173822912 -8592330 + MLT1A1 LTR MaLR 1 365 0 310 187 77 22 chr6 173823685 173823776 -8591466 + L1ME4a LINE L1 6010 6105 -16 606 268 45 0 chr6 173824176 173824333 -8590909 + MER5A DNA MER1_type 1 164 -25 815 209 33 6 chr6 173825415 173825597 -8589645 - MSTD LTR MaLR 0 396 210 365 107 192 0 chr6 173825611 173825694 -8589548 - MSTD LTR MaLR -269 96 1 297 285 16 8 chr6 173827366 173827489 -8587753 - L1ME4a LINE L1 -24 6097 5974 204 255 0 20 chr6 173827572 173827623 -8587619 + GA-rich Low_complexity Low_complexity 4 53 0 474 259 0 0 chr6 173827668 173827776 -8587466 - MER58B DNA MER1_type -3 338 231 1319 144 9 31 chr6 173828013 173828235 -8587007 - AluJo SINE Alu -95 217 1 22 56 0 0 chr6 173829059 173829095 -8586147 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr6 173829830 173829869 -8585373 + AT_rich Low_complexity Low_complexity 1 39 0 553 321 41 0 chr6 173830710 173830953 -8584289 - L1ME4a LINE L1 -336 5785 5533 2210 108 3 3 chr6 173831290 173831586 -8583656 + AluSx SINE Alu 1 296 -16 2431 161 54 10 chr6 173833101 173833510 -8581732 + MSTA LTR MaLR 1 427 -1 285 346 68 0 chr6 173834001 173834134 -8581108 + MIR SINE MIR 90 231 -31 212 326 0 0 chr6 173834715 173834761 -8580481 + L2 LINE L2 3210 3255 -17 24 0 0 0 chr6 173836264 173836288 -8578954 + AT_rich Low_complexity Low_complexity 1 24 0 443 276 23 9 chr6 173838176 173838528 -8576714 + (TTGTG)n Simple_repeat Simple_repeat 1 357 0 304 318 23 0 chr6 173838540 173838713 -8576529 + (TTGTG)n Simple_repeat Simple_repeat 3 179 0 400 289 23 0 chr6 173838725 173838898 -8576344 + (TTGTG)n Simple_repeat Simple_repeat 3 179 0 367 302 20 8 chr6 173838993 173839493 -8575749 + (TTGTG)n Simple_repeat Simple_repeat 1 506 0 1466 136 0 52 chr6 173840248 173840381 -8574861 - L1PA15 LINE L1 -4 6161 6045 1960 129 0 0 chr6 173840381 173840653 -8574589 - AluSx SINE Alu -3 309 38 1466 136 0 52 chr6 173840653 173840769 -8574473 - L1PA15 LINE L1 -120 6045 5925 819 152 0 14 chr6 173840905 173841043 -8574199 - L1PA15 LINE L1 -218 5947 5812 183 42 0 0 chr6 173841336 173841360 -8573882 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr6 173841629 173841658 -8573584 + AT_rich Low_complexity Low_complexity 1 29 0 336 48 0 0 chr6 173842087 173842129 -8573113 + (TA)n Simple_repeat Simple_repeat 2 43 0 423 0 0 0 chr6 173842263 173842310 -8572932 + (CA)n Simple_repeat Simple_repeat 2 48 0 327 157 143 122 chr6 173842771 173842918 -8572324 + MLT1E LTR MaLR 444 593 0 472 125 0 0 chr6 173843411 173843475 -8571767 + AluSg SINE Alu 41 104 -206 2466 168 25 28 chr6 173843480 173843915 -8571327 + Tigger2a DNA MER2_type 1 434 0 2315 104 0 0 chr6 173843938 173844237 -8571005 + AluSg SINE Alu 1 299 -11 267 79 0 0 chr6 173844384 173844422 -8570820 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 395 305 53 32 chr6 173844531 173844721 -8570521 + MIR SINE MIR 20 213 -49 511 256 125 0 chr6 173845822 173845990 -8569252 - MIR SINE MIR -11 251 63 1848 164 7 0 chr6 173847429 173847721 -8567521 + AluSx SINE Alu 1 294 -18 224 236 0 18 chr6 173847970 173848025 -8567217 + CT-rich Low_complexity Low_complexity 2 55 0 2320 106 0 0 chr6 173848047 173848358 -8566884 - AluSx SINE Alu -1 311 1 2257 119 44 39 chr6 173850089 173850245 -8564997 + THE1B LTR MaLR 1 155 -209 2170 102 0 3 chr6 173850245 173850573 -8564669 - AluSx SINE Alu 0 327 1 2257 119 44 39 chr6 173850573 173850777 -8564465 + THE1B LTR MaLR 155 364 0 2445 60 20 0 chr6 173851517 173851690 -8563552 - AluY SINE Alu -4 307 124 315 0 0 0 chr6 173851690 173851725 -8563517 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2445 60 20 0 chr6 173851725 173851850 -8563392 - AluY SINE Alu -187 124 3 393 163 0 50 chr6 173852761 173852841 -8562401 - Charlie3 DNA MER1_type -2634 76 1 542 305 115 10 chr6 173853196 173853396 -8561846 - MIR SINE MIR -24 238 18 217 240 100 20 chr6 173853557 173853657 -8561585 - L2 LINE L2 -187 3085 2978 247 266 0 11 chr6 173854873 173854967 -8560275 + L1MC4 LINE L1 6611 6703 -1339 413 185 8 0 chr6 173854967 173855086 -8560156 + (TA)n Simple_repeat Simple_repeat 2 121 0 317 330 0 0 chr6 173855122 173855213 -8560029 - L1MC4 LINE L1 -1340 6702 6612 22 0 0 0 chr6 173855255 173855277 -8559965 + AT_rich Low_complexity Low_complexity 1 22 0 180 299 221 0 chr6 173855414 173855491 -8559751 - L2 LINE L2 -10 3303 3210 198 330 50 40 chr6 173857509 173857609 -8557633 + L2 LINE L2 3136 3236 -36 247 295 0 38 chr6 173857609 173857714 -8557528 + (TATATG)n Simple_repeat Simple_repeat 6 106 0 225 0 0 0 chr6 173858402 173858422 -8556820 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr6 173858422 173858447 -8556795 + (CA)n Simple_repeat Simple_repeat 2 26 0 519 141 0 0 chr6 173858790 173858861 -8556381 + AluS SINE Alu 2 72 -241 748 247 26 0 chr6 173908977 173909171 -8506071 + MER63A DNA MER1_type 12 210 0 2145 110 13 3 chr6 173909489 173909797 -8505445 + AluSx SINE Alu 1 311 -1 219 69 0 0 chr6 173909797 173909826 -8505416 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 1934 117 0 65 chr6 173911110 173911417 -8503825 + AluSx SINE Alu 1 287 -25 347 94 98 14 chr6 173911417 173911712 -8503530 + (TA)n Simple_repeat Simple_repeat 1 319 0 22 0 0 0 chr6 173911735 173911757 -8503485 + AT_rich Low_complexity Low_complexity 1 22 0 282 95 108 6 chr6 173911757 173911915 -8503327 + (TA)n Simple_repeat Simple_repeat 2 175 0 1920 113 47 4 chr6 173912202 173912505 -8502737 - AluSx SINE Alu 0 315 1 233 287 37 37 chr6 173913834 173913942 -8501300 + MIR SINE MIR 114 221 -41 2426 28 49 0 chr6 173914361 173914646 -8500596 - AluY SINE Alu -12 299 1 1218 242 163 17 chr6 173915760 173916178 -8499064 - MLT1H1 LTR MaLR -76 479 1 473 265 65 29 chr6 173918628 173918798 -8496444 - MIR SINE MIR -11 251 76 2190 108 0 0 chr6 173919205 173919491 -8495751 + AluSg SINE Alu 1 286 -24 811 147 0 15 chr6 173919584 173919720 -8495522 - FRAM SINE Alu -9 167 34 364 200 0 82 chr6 173919901 173919986 -8495256 - AluJo SINE Alu -148 154 77 864 237 29 14 chr6 173919987 173920194 -8495048 - AluJb SINE Alu -102 210 1 778 277 77 7 chr6 173922767 173923077 -8492165 - L1MD2 LINE L1 -375 5984 5653 836 289 122 30 chr6 173923302 173923703 -8491539 - L2 LINE L2 -2072 1242 805 300 352 19 0 chr6 173923706 173923811 -8491431 - MER5A DNA MER1_type 0 189 83 180 331 74 34 chr6 173923842 173924017 -8491225 - L2 LINE L2 -2504 810 629 2357 249 106 108 chr6 173924111 173925571 -8489671 - Charlie7 DNA MER1_type -416 2196 740 2221 84 3 3 chr6 173925571 173925931 -8489311 - AluSp SINE Alu 0 360 1 2357 249 106 108 chr6 173925931 173926618 -8488624 - Charlie7 DNA MER1_type -1872 740 53 2551 46 3 3 chr6 173926659 173926962 -8488280 - AluY SINE Alu -8 303 1 313 143 0 0 chr6 173927145 173927194 -8488048 - MER5A DNA MER1_type -80 109 61 208 147 0 0 chr6 173927194 173927228 -8488014 + (T)n Simple_repeat Simple_repeat 1 34 0 832 207 35 6 chr6 173927364 173927533 -8487709 + MER58B DNA MER1_type 167 340 -1 2201 125 0 10 chr6 173928393 173928705 -8486537 + AluSx SINE Alu 1 309 -3 236 93 47 0 chr6 173928817 173928860 -8486382 + CT-rich Low_complexity Low_complexity 4 48 0 1854 114 57 0 chr6 173928863 173929126 -8486116 - AluSx SINE Alu -34 278 1 2340 94 0 25 chr6 173929304 173929624 -8485618 - AluSx SINE Alu 0 312 1 2211 109 3 13 chr6 173932700 173933004 -8482238 + AluY SINE Alu 1 301 -10 180 302 159 24 chr6 173933199 173933325 -8481917 - MER5B DNA MER1_type 0 178 36 814 265 106 8 chr6 173933328 173933624 -8481618 + L1ME3A LINE L1 5476 5803 -359 839 201 47 0 chr6 173933627 173933796 -8481446 + MER45A DNA AcHobo 1 177 -1 722 298 74 20 chr6 173933805 173934104 -8481138 + L1ME3A LINE L1 5852 6166 -4 2277 88 0 29 chr6 173934578 173934884 -8480358 + AluY SINE Alu 1 297 -14 1688 203 0 3 chr6 173935733 173936028 -8479214 + AluJb SINE Alu 1 294 -18 300 234 27 45 chr6 173936816 173936853 -8478389 - L1MC4 LINE L1 -1320 6722 6686 1999 118 7 0 chr6 173936853 173937142 -8478100 + AluSx SINE Alu 1 291 -21 300 234 27 45 chr6 173937142 173937215 -8478027 - L1MC4 LINE L1 -1356 6686 6614 370 49 85 37 chr6 173937226 173937390 -8477852 + (TA)n Simple_repeat Simple_repeat 1 172 0 307 112 69 0 chr6 173937397 173937513 -8477729 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 28 61 0 0 chr6 173937514 173937563 -8477679 + AT_rich Low_complexity Low_complexity 1 49 0 202 116 83 16 chr6 173937570 173937691 -8477551 + (TTATA)n Simple_repeat Simple_repeat 1 129 0 295 112 106 0 chr6 173937704 173937865 -8477377 + (TA)n Simple_repeat Simple_repeat 2 179 0 243 97 117 0 chr6 173937883 173938037 -8477205 + (TA)n Simple_repeat Simple_repeat 1 172 0 491 65 112 2 chr6 173938051 173938471 -8476771 + (TA)n Simple_repeat Simple_repeat 1 466 0 328 266 156 6 chr6 173940159 173940332 -8474910 + L2 LINE L2 3106 3304 -9 234 305 42 0 chr6 173940357 173940452 -8474790 + MIR SINE MIR 156 254 -8 192 85 0 64 chr6 173941282 173941329 -8473913 + (TCTCC)n Simple_repeat Simple_repeat 3 46 0 705 100 0 0 chr6 173942170 173942260 -8472982 + 5S rRNA rRNA 1 90 -31 224 29 0 29 chr6 173942927 173942961 -8472281 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2100 126 0 0 chr6 173942964 173943249 -8471993 - AluSx SINE Alu -27 285 1 2151 141 0 6 chr6 173943736 173944049 -8471193 - AluSx SINE Alu -1 311 1 2239 99 0 0 chr6 173944285 173944608 -8470634 + AluSx SINE Alu 1 323 0 763 204 33 35 chr6 173944842 173945105 -8470137 + MER58 DNA MER1_type 2 2396 -24 14625 133 31 20 chr6 173945584 173945745 -8469497 + Tigger1 DNA MER2_type 1 159 -2259 2329 86 0 0 chr6 173945745 173946052 -8469190 - AluY SINE Alu 0 307 1 14625 133 31 20 chr6 173946052 173947392 -8467850 + Tigger1 DNA MER2_type 159 1541 -877 2150 119 10 13 chr6 173947392 173947703 -8467539 + AluSg SINE Alu 1 310 0 14625 133 31 20 chr6 173947703 173948590 -8466652 + Tigger1 DNA MER2_type 1541 2417 -1 232 299 13 0 chr6 173949811 173949888 -8465354 + (TTCA)n Simple_repeat Simple_repeat 3 80 0 764 237 194 37 chr6 173950101 173950502 -8464740 + MLT1C LTR MaLR 1 464 -3 181 300 50 10 chr6 173950614 173950714 -8464528 - L2 LINE L2 -766 2548 2445 6696 64 8 2 chr6 173950749 173951597 -8463645 - L1PA8 LINE L1 -13 6159 5307 1078 102 19 12 chr6 173951594 173951781 -8463461 + L1M LINE L1 5150 5334 -832 * 2122 118 0 26 chr6 173952707 173953020 -8462222 - AluSg SINE Alu -5 305 1 2313 93 3 26 chr6 173953174 173953484 -8461758 + AluSq SINE Alu 1 303 -10 835 259 43 0 chr6 173954913 173955098 -8460144 + MER58A DNA MER1_type 1 193 -31 1989 106 4 0 chr6 173955099 173955364 -8459878 - AluSx SINE Alu -15 297 32 2227 99 0 0 chr6 173955955 173956264 -8458978 - AluSq SINE Alu 0 310 2 571 290 68 16 chr6 173956360 173956608 -8458634 - L1M4 LINE L1 -2261 3885 3625 433 251 50 62 chr6 173957043 173957222 -8458020 + MER5B DNA MER1_type 1 177 -1 2304 117 0 0 chr6 173957232 173957540 -8457702 - AluSg SINE Alu -2 308 1 36 40 0 0 chr6 173958002 173958052 -8457190 + AT_rich Low_complexity Low_complexity 1 50 0 1881 150 0 31 chr6 173958055 173958379 -8456863 - AluSx SINE Alu 0 315 1 1505 153 8 35 chr6 173959886 173960140 -8455102 - AluJo SINE Alu -26 286 40 2352 101 0 0 chr6 173960240 173960538 -8454704 - AluSx SINE Alu -14 298 1 1929 129 34 14 chr6 173960567 173960862 -8454380 + AluSx SINE Alu 1 301 -11 2005 185 31 8 chr6 173960928 173961312 -8453930 - MSTD LTR MaLR -3 393 1 2391 81 7 0 chr6 173961748 173962045 -8453197 - AluSc SINE Alu -10 299 1 450 283 9 0 chr6 173962405 173962518 -8452724 + MER94 DNA DNA 10 123 -11 288 247 124 10 chr6 173964257 173964354 -8450888 + MIR3 SINE MIR 82 189 -19 307 289 96 0 chr6 173964504 173964608 -8450634 + L2 LINE L2 3192 3305 -8 2293 89 0 0 chr6 173965024 173965315 -8449927 - AluSc SINE Alu -18 291 1 227 159 91 0 chr6 173965811 173965855 -8449387 + MER92C LTR ERV1 17 64 -490 214 139 0 0 chr6 173965866 173965902 -8449340 + L2 LINE L2 3278 3313 0 196 347 0 13 chr6 173967256 173967331 -8447911 + MIR SINE MIR 67 140 -122 254 222 19 0 chr6 173967669 173967680 -8447562 + MER3 DNA MER1_type 36 47 -162 736 192 104 39 chr6 173967680 173967862 -8447380 - MER3 DNA MER1_type 0 209 16 255 31 0 0 chr6 173968510 173968542 -8446700 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2002 141 0 14 chr6 173968545 173968835 -8446407 - AluSx SINE Alu -26 286 1 2079 113 51 0 chr6 173969491 173969783 -8445459 + AluSg SINE Alu 1 307 -3 1729 124 120 0 chr6 173969856 173970122 -8445120 - AluSx SINE Alu -14 298 1 1371 196 73 86 chr6 173970302 173970689 -8444553 - MER31B LTR ERV1 -9 457 75 2347 108 0 0 chr6 173970689 173970996 -8444246 + AluSx SINE Alu 1 307 -5 1371 196 73 86 chr6 173970996 173971071 -8444171 - MER31B LTR ERV1 -391 75 1 2272 103 15 3 chr6 173971175 173971505 -8443737 - L1PA12 LINE L1 -426 5742 5409 2608 99 5 25 chr6 173971505 173971894 -8443348 + L1PA12 LINE L1 5773 6159 -9 478 302 35 0 chr6 173973780 173973952 -8441290 - MIR SINE MIR -48 214 37 223 299 117 0 chr6 173974129 173974206 -8441036 + MIR SINE MIR 150 235 -27 194 157 133 108 chr6 173979269 173979352 -8435890 + MIR SINE MIR 76 160 -102 431 270 73 6 chr6 173979407 173979585 -8435657 + MER20 DNA MER1_type 30 219 0 2260 102 0 10 chr6 173979694 173979997 -8435245 - AluSc SINE Alu -9 300 1 797 128 0 35 chr6 173981568 173981709 -8433533 + L1MA8 LINE L1 6156 6291 0 2498 65 0 3 chr6 173981787 173982097 -8433145 + AluY SINE Alu 1 309 -2 180 0 0 0 chr6 173982469 173982489 -8432753 + (T)n Simple_repeat Simple_repeat 1 20 0 2096 128 23 0 chr6 173983089 173983394 -8431848 - AluSx SINE Alu 0 312 1 1757 140 4 39 chr6 173983395 173983674 -8431568 - AluSq SINE Alu -16 297 29 2208 122 7 0 chr6 173984531 173984835 -8430407 + AluSx SINE Alu 1 306 -6 24 53 0 0 chr6 173986022 173986060 -8429182 + AT_rich Low_complexity Low_complexity 1 38 0 2069 233 103 11 chr6 173986927 173987628 -8427614 - MER69 DNA AcHobo 0 2526 1762 * 2556 279 69 25 chr6 173987624 173988585 -8426657 - MER69 DNA AcHobo -1521 1005 3 1532 202 11 7 chr6 173989106 173989393 -8425849 + AluJo SINE Alu 5 292 -20 1151 330 48 17 chr6 173989472 173989649 -8425593 - MLT1J LTR MaLR -13 498 328 2119 128 7 0 chr6 173989649 173989945 -8425297 - AluSx SINE Alu -14 298 1 1151 330 48 17 chr6 173989945 173990242 -8425000 - MLT1J LTR MaLR -183 328 9 1958 116 4 0 chr6 173990335 173990602 -8424640 + AluSx SINE Alu 45 312 0 295 309 123 30 chr6 173990671 173991004 -8424238 + L1MC/D LINE L1 5500 5863 -1945 280 272 17 28 chr6 173991549 173991729 -8423513 + (TA)n Simple_repeat Simple_repeat 2 179 0 89 69 0 0 chr6 173991733 173991906 -8423336 + AT_rich Low_complexity Low_complexity 1 173 0 633 264 118 95 chr6 173991906 173992353 -8422889 - L1ME LINE L1 -406 5715 5255 218 381 0 0 chr6 173992468 173992552 -8422690 - L2 LINE L2 -5 3267 3184 25 0 0 0 chr6 173992708 173992733 -8422509 + AT_rich Low_complexity Low_complexity 1 25 0 2001 122 27 3 chr6 173992829 173993123 -8422119 - AluSx SINE Alu -11 301 1 1718 159 10 10 chr6 173993706 173994008 -8421234 + AluJo SINE Alu 1 302 -10 201 175 0 0 chr6 173995306 173995346 -8419896 + (TG)n Simple_repeat Simple_repeat 1 40 0 769 86 0 0 chr6 173995596 173995689 -8419553 - AluSg/x SINE Alu -15 294 202 1686 273 31 44 chr6 173995807 173996426 -8418816 - L1ME1 LINE L1 -2 6164 5554 1078 283 37 13 chr6 173996464 173996846 -8418396 - L1MEc LINE L1 -5971 425 35 537 366 43 0 chr6 173997163 173997327 -8417915 + MER91A DNA MER1_type 4 174 -22 1991 98 21 36 chr6 173997360 173997537 -8417705 + THE1B LTR MaLR 1 179 -196 2483 74 3 0 chr6 173997537 173997835 -8417407 + AluSp SINE Alu 1 299 -14 1991 98 21 36 chr6 173997835 173997980 -8417262 + THE1B LTR MaLR 179 375 0 1994 159 46 46 chr6 173999659 173999749 -8415493 + MLT1B LTR MaLR 1 90 -300 2100 124 0 0 chr6 173999749 174000064 -8415178 - AluSx SINE Alu 0 315 1 1994 159 46 46 chr6 174000064 174000362 -8414880 + MLT1B LTR MaLR 89 390 0 2504 87 0 0 chr6 174000371 174000682 -8414560 + AluY SINE Alu 1 311 0 222 91 0 0 chr6 174001309 174001342 -8413900 + (TG)n Simple_repeat Simple_repeat 2 34 0 331 254 108 43 chr6 174002316 174002548 -8412694 + L1ME3A LINE L1 5924 6170 0 367 155 24 0 chr6 174002720 174002804 -8412438 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 989 241 46 80 chr6 174003584 174003677 -8411565 + MLT1J2 LTR MaLR 7 102 -348 495 0 0 0 chr6 174003677 174003732 -8411510 + (CA)n Simple_repeat Simple_repeat 1 55 0 989 241 46 80 chr6 174003732 174004091 -8411151 + MLT1J2 LTR MaLR 102 444 -6 280 218 51 26 chr6 174004418 174004496 -8410746 - L1ME LINE L1 -505 5616 5537 1560 206 14 3 chr6 174004546 174004838 -8410404 - AluJb SINE Alu -17 295 1 313 255 38 0 chr6 174004840 174004946 -8410296 - L1ME LINE L1 -735 5427 5318 469 295 62 0 chr6 174005899 174006028 -8409214 - MER5B DNA MER1_type -39 139 3 491 281 62 21 chr6 174006042 174006234 -8409008 + MIR SINE MIR 2 201 -61 449 274 146 24 chr6 174006318 174006530 -8408712 + MIR SINE MIR 10 247 -15 1034 141 18 3 chr6 174006946 174007228 -8408014 + (TA)n Simple_repeat Simple_repeat 2 287 0 2200 98 17 0 chr6 174008243 174008538 -8406704 - AluSx SINE Alu -12 300 1 216 97 0 0 chr6 174008960 174008991 -8406251 + (T)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr6 174009339 174009369 -8405873 + AT_rich Low_complexity Low_complexity 1 30 0 2518 79 0 0 chr6 174009485 174009790 -8405452 - AluY SINE Alu -6 305 1 337 178 0 84 chr6 174010270 174010377 -8404865 - HAL1b LINE L1 -505 843 746 27 0 0 0 chr6 174010817 174010844 -8404398 + AT_rich Low_complexity Low_complexity 1 27 0 1828 122 4 0 chr6 174010854 174011101 -8404141 + AluSq SINE Alu 1 248 -65 180 0 0 0 chr6 174011104 174011124 -8404118 + (A)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr6 174011162 174011189 -8404053 + AT_rich Low_complexity Low_complexity 1 27 0 589 248 0 8 chr6 174011190 174011307 -8403935 - FLAM_C SINE Alu -26 117 2 317 293 31 79 chr6 174011327 174011556 -8403686 - HAL1 LINE L1 -746 1761 1544 2580 121 43 79 chr6 174011789 174011831 -8403411 - MLT2A2 LTR ERVL 0 453 411 210 71 0 0 chr6 174011831 174011859 -8403383 + (TA)n Simple_repeat Simple_repeat 2 29 0 2580 121 43 79 chr6 174011859 174012286 -8402956 - MLT2A2 LTR ERVL -42 411 1 2044 130 0 0 chr6 174012971 174013290 -8401952 + AluSx SINE Alu 1 319 0 22 56 0 0 chr6 174014126 174014162 -8401080 + AT_rich Low_complexity Low_complexity 1 36 0 4499 135 58 34 chr6 174015134 174015423 -8399819 + Tigger1 DNA MER2_type 1577 1857 -561 2295 108 3 0 chr6 174015423 174015730 -8399512 - AluSq SINE Alu -5 308 1 4499 135 58 34 chr6 174015730 174016260 -8398982 + Tigger1 DNA MER2_type 1857 2416 -2 2269 104 3 0 chr6 174017071 174017369 -8397873 + AluSx SINE Alu 1 299 -13 274 193 65 46 chr6 174017584 174017713 -8397529 + MLT1H LTR MaLR 60 240 -309 244 276 26 52 chr6 174017997 174018070 -8397172 + MLT1H1 LTR MaLR 443 513 -42 2066 105 37 3 chr6 174018070 174018366 -8396876 + AluSq SINE Alu 1 306 -7 244 276 26 52 chr6 174018366 174018408 -8396834 + MLT1H1 LTR MaLR 513 555 0 225 108 0 0 chr6 174018688 174018725 -8396517 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 437 277 44 82 chr6 174018761 174018892 -8396350 + L1MC4a LINE L1 5558 5693 -2115 1801 188 44 27 chr6 174018892 174019259 -8395983 + MLT1A2 LTR MaLR 1 373 -1 437 277 44 82 chr6 174019259 174019517 -8395725 + L1MC4a LINE L1 5693 5932 -1876 2189 110 3 3 chr6 174020182 174020474 -8394768 + AluSx SINE Alu 5 296 -16 2399 71 0 13 chr6 174021966 174022277 -8392965 - AluY SINE Alu -4 307 1 2223 130 0 0 chr6 174022280 174022581 -8392661 - AluSx SINE Alu -11 301 1 1995 245 124 41 chr6 174023915 174024695 -8390547 + L1ME1 LINE L1 5317 6161 -5 6441 132 66 27 chr6 174025084 174025277 -8389965 - Tigger3b DNA MER2_type -1799 1229 1045 1990 150 7 0 chr6 174025277 174025577 -8389665 + AluSx SINE Alu 1 302 -10 6441 132 66 27 chr6 174025577 174025684 -8389558 - Tigger3b DNA MER2_type -1983 1045 944 2279 71 20 17 chr6 174025684 174025980 -8389262 + AluSc SINE Alu 1 297 -12 6441 132 66 27 chr6 174025980 174026848 -8388394 - Tigger3b DNA MER2_type -2084 944 15 211 302 0 0 chr6 174027652 174027705 -8387537 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 1639 143 8 0 chr6 174028377 174028622 -8386620 + AluSx SINE Alu 1 247 -65 23 0 0 0 chr6 174028625 174028648 -8386594 + AT_rich Low_complexity Low_complexity 1 23 0 358 287 52 0 chr6 174028857 174028972 -8386270 - L1MC4 LINE L1 -148 7894 7774 689 276 10 5 chr6 174029181 174029380 -8385862 + MIR SINE MIR 45 244 -18 280 336 0 39 chr6 174029599 174029703 -8385539 + L2 LINE L2 3173 3272 0 2147 115 0 0 chr6 174030465 174030760 -8384482 + AluY SINE Alu 1 295 -16 573 308 41 0 chr6 174031045 174031217 -8384025 - MIR SINE MIR -14 248 70 310 311 61 8 chr6 174031565 174031697 -8383545 + L2 LINE L2 3134 3272 0 742 120 10 0 chr6 174032863 174032963 -8382279 + AluSp/q SINE Alu 196 296 -17 1492 232 82 9 chr6 174033125 174033465 -8381777 + MLT1A1 LTR MaLR 1 365 0 464 271 39 39 chr6 174033799 174033980 -8381262 - MIR SINE MIR -27 235 55 2607 181 25 71 chr6 174034090 174034693 -8380549 + L1MB5 LINE L1 5589 6163 -11 2049 129 37 0 chr6 174034693 174034988 -8380254 - AluSx SINE Alu -6 306 1 256 304 67 44 chr6 174035260 174035395 -8379847 + MIR3 SINE MIR 24 161 -47 21 36 0 0 chr6 174035425 174035453 -8379789 + AT_rich Low_complexity Low_complexity 1 28 0 1669 204 78 35 chr6 174035784 174036264 -8378978 + MLT1D LTR MaLR 1 626 0 1953 116 0 8 chr6 174036329 174036588 -8378654 + AluSx SINE Alu 1 257 -55 604 179 66 0 chr6 174036680 174036786 -8378456 + MSTD LTR MaLR 284 396 0 32 43 0 0 chr6 174037277 174037323 -8377919 + AT_rich Low_complexity Low_complexity 1 46 0 25 65 0 0 chr6 174037488 174037534 -8377708 + AT_rich Low_complexity Low_complexity 1 46 0 908 221 90 58 chr6 174038038 174038173 -8377069 - Charlie1b DNA MER1_type -2238 523 394 2179 123 3 0 chr6 174038173 174038475 -8376767 + AluSx SINE Alu 1 303 -9 908 221 90 58 chr6 174038475 174038796 -8376446 - Charlie1b DNA MER1_type -2367 394 11 257 293 0 0 chr6 174038833 174038891 -8376351 - Charlie1b DNA MER1_type -455 68 11 257 293 0 0 chr6 174038928 174038986 -8376256 - Charlie1b DNA MER1_type -455 68 11 308 259 0 0 chr6 174039023 174039081 -8376161 - Charlie1b DNA MER1_type -455 68 11 2098 167 18 42 chr6 174039163 174039547 -8375695 + THE1C LTR MaLR 1 375 0 607 242 66 48 chr6 174040032 174040259 -8374983 + MER31-int LTR ERV1 2792 3022 -1914 6783 143 33 30 chr6 174040299 174040457 -8374785 + HSMAR2 DNA Mariner 2 158 -1144 1900 162 3 3 chr6 174040457 174040759 -8374483 + AluJb SINE Alu 11 312 0 6783 143 33 30 chr6 174040759 174041385 -8373857 + HSMAR2 DNA Mariner 158 781 -521 2185 107 3 3 chr6 174041385 174041684 -8373558 - AluY SINE Alu -12 299 1 6783 143 33 30 chr6 174041684 174041951 -8373291 + HSMAR2 DNA Mariner 781 1066 -236 2244 129 0 0 chr6 174041951 174042261 -8372981 - AluSx SINE Alu -2 310 1 6783 143 33 30 chr6 174042261 174042492 -8372750 + HSMAR2 DNA Mariner 1066 1295 -7 854 238 78 125 chr6 174042797 174043603 -8371639 + MER31-int LTR ERV1 3330 4097 -839 823 212 121 41 chr6 174043860 174044199 -8371043 + LTR37A LTR ERV1 61 426 0 2167 127 0 3 chr6 174044311 174044619 -8370623 + AluSx SINE Alu 1 307 -5 2212 135 0 0 chr6 174044626 174044930 -8370312 + AluSq SINE Alu 2 305 -8 34 55 0 0 chr6 174044978 174045033 -8370209 + AT_rich Low_complexity Low_complexity 1 55 0 2178 108 10 0 chr6 174045075 174045371 -8369871 - AluSp SINE Alu -14 299 1 237 132 0 0 chr6 174045457 174045495 -8369747 + (A)n Simple_repeat Simple_repeat 1 38 0 3976 127 75 44 chr6 174046238 174046989 -8368253 + LTR1 LTR ERV1 12 785 0 2352 102 7 0 chr6 174047426 174047731 -8367511 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr6 174051100 174051129 -8364113 + AT_rich Low_complexity Low_complexity 1 29 0 261 0 0 0 chr6 174051562 174051591 -8363651 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 333 0 0 0 chr6 174051590 174051627 -8363615 + (TC)n Simple_repeat Simple_repeat 1 37 0 361 309 69 38 chr6 174051826 174052117 -8363125 + L1ME4a LINE L1 5598 5897 -224 367 313 6 22 chr6 174052180 174052362 -8362880 + (TA)n Simple_repeat Simple_repeat 2 180 0 2380 100 0 3 chr6 174053150 174053460 -8361782 - AluSx SINE Alu -1 311 3 374 345 79 81 chr6 174053525 174053945 -8361297 - L2 LINE L2 -2 3270 2852 187 354 31 50 chr6 174054337 174054405 -8360837 + L2 LINE L2 2678 2746 -568 2221 81 3 0 chr6 174054405 174054709 -8360533 + AluSx SINE Alu 1 305 0 187 354 31 50 chr6 174054709 174054800 -8360442 + L2 LINE L2 2746 2835 -479 241 266 129 65 chr6 174055165 174055289 -8359953 - L2 LINE L2 -338 2975 2844 2102 111 3 3 chr6 174055438 174055727 -8359515 + AluSx SINE Alu 1 289 -23 194 316 82 39 chr6 174055945 174056151 -8359091 - L2 LINE L2 -234 3079 2865 22 0 0 0 chr6 174056179 174056201 -8359041 + AT_rich Low_complexity Low_complexity 1 22 0 2131 118 13 19 chr6 174056809 174057123 -8358119 + AluSx SINE Alu 1 312 0 1857 161 7 3 chr6 174057511 174057802 -8357440 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr6 174058286 174058307 -8356935 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1988 129 7 0 chr6 174058307 174058585 -8356657 - AluSx SINE Alu -32 280 1 23 0 0 0 chr6 174058586 174058609 -8356633 + AT_rich Low_complexity Low_complexity 1 23 0 358 317 50 50 chr6 174059061 174059260 -8355982 + MIR SINE MIR 19 217 -45 904 209 48 9 chr6 174060312 174060522 -8354720 - MER20 DNA MER1_type 0 219 2 2294 111 3 0 chr6 174060744 174061051 -8354191 + AluSq SINE Alu 1 308 -5 291 290 32 0 chr6 174061334 174061427 -8353815 - MIR SINE MIR -149 113 18 247 277 82 77 chr6 174062380 174062559 -8352683 - MIR SINE MIR -39 223 44 2199 119 0 3 chr6 174062559 174062898 -8352344 - AluSc SINE Alu 0 309 1 247 277 82 77 chr6 174062898 174062942 -8352300 - MIR SINE MIR -218 44 2 25 0 0 0 chr6 174063677 174063702 -8351540 + AT_rich Low_complexity Low_complexity 1 25 0 2180 133 0 9 chr6 174063772 174064088 -8351154 + AluSq SINE Alu 1 313 0 323 230 333 18 chr6 174065335 174065500 -8349742 - MIR SINE MIR -38 224 8 200 241 35 35 chr6 174066897 174066955 -8348287 + L2 LINE L2 3251 3308 -5 2318 92 14 0 chr6 174067716 174068010 -8347232 - AluSg SINE Alu -12 298 1 2007 110 7 24 chr6 174068038 174068330 -8346912 + AluSq SINE Alu 1 287 -26 212 0 36 0 chr6 174068333 174068361 -8346881 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5057 128 19 28 chr6 174070683 174071469 -8343773 - MER4E LTR ERV1 0 779 1 2280 89 0 0 chr6 174072001 174072305 -8342937 - AluSg SINE Alu 0 304 1 245 345 43 17 chr6 174072586 174072702 -8342540 - MIR3 SINE MIR -21 187 69 3260 146 23 40 chr6 174072815 174073201 -8342041 - LTR59 LTR ERV1 -6 591 217 2055 102 0 58 chr6 174073201 174073514 -8341728 - AluSx SINE Alu -17 295 1 3260 146 23 40 chr6 174073514 174073728 -8341514 - LTR59 LTR ERV1 -380 217 1 23 0 0 0 chr6 174073941 174073964 -8341278 + AT_rich Low_complexity Low_complexity 1 23 0 306 264 33 0 chr6 174074296 174074387 -8340855 + L1ME LINE L1 5562 5655 -466 589 190 68 31 chr6 174074507 174074670 -8340572 + MER61A LTR ERV1 1 169 -174 1088 179 16 0 chr6 174074677 174074867 -8340375 - MER72 LTR ERV1 -529 193 1 960 146 6 19 chr6 174074983 174075141 -8340101 + MER61A LTR ERV1 188 343 0 1995 140 10 0 chr6 174075217 174075509 -8339733 - AluJb SINE Alu -10 302 8 213 39 0 0 chr6 174075575 174075601 -8339641 + (TA)n Simple_repeat Simple_repeat 1 26 0 2249 114 0 0 chr6 174075716 174076013 -8339229 - AluSq SINE Alu -16 297 1 2369 76 3 3 chr6 174077167 174077468 -8337774 + AluSp SINE Alu 1 301 -12 1261 88 0 6 chr6 174077925 174078085 -8337157 + AluSx SINE Alu 1 159 -153 185 272 128 64 chr6 174078609 174078734 -8336508 - MIR SINE MIR -57 151 19 1762 100 4 52 chr6 174078846 174079115 -8336127 + AluSx SINE Alu 1 256 -56 826 225 24 38 chr6 174079658 174079867 -8335375 - MER58A DNA MER1_type -2 222 17 2237 77 25 0 chr6 174079944 174080230 -8335012 - AluY SINE Alu -5 306 14 598 200 60 76 chr6 174080439 174080624 -8334618 - MER5A DNA MER1_type -3 186 5 2168 122 3 0 chr6 174080770 174081066 -8334176 - AluSx SINE Alu -15 297 1 1991 227 36 60 chr6 174081990 174082395 -8332847 - LTR40a LTR ERVL 0 519 129 2464 70 3 10 chr6 174082395 174082708 -8332534 - AluY SINE Alu 0 311 1 1991 227 36 60 chr6 174082708 174082834 -8332408 - LTR40a LTR ERVL -390 129 1 2051 122 3 7 chr6 174082865 174083209 -8332033 - AluSp SINE Alu 0 343 1 1951 155 0 3 chr6 174084135 174084431 -8330811 - AluSx SINE Alu -15 297 3 470 271 102 10 chr6 174085280 174085600 -8329642 - LTR33A LTR ERVL -8 515 130 832 183 0 0 chr6 174086258 174086389 -8328853 + FLAM_A SINE Alu 1 131 -2 8121 14 0 0 chr6 174087091 174088763 -8326479 + L1HS LINE L1 4468 6139 -16 210 37 0 0 chr6 174088763 174088790 -8326452 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 311 201 75 82 chr6 174088972 174089106 -8326136 + MLT1K LTR MaLR 352 484 -104 2047 122 21 0 chr6 174089113 174089401 -8325841 - AluSx SINE Alu -8 304 11 241 277 0 0 chr6 174090826 174090891 -8324351 - MER66B LTR ERV1 -388 98 34 * 2043 173 25 32 chr6 174090886 174091286 -8323956 + MER66B LTR ERV1 90 486 0 1279 210 92 16 chr6 174092262 174092576 -8322666 + MER2 DNA MER2_type 4 341 -3 21 0 0 0 chr6 174093034 174093055 -8322187 + AT_rich Low_complexity Low_complexity 1 21 0 1864 113 39 3 chr6 174093073 174093392 -8321850 + AluSx SINE Alu 1 312 0 22 35 0 0 chr6 174093454 174093483 -8321759 + AT_rich Low_complexity Low_complexity 1 29 0 949 33 33 0 chr6 174093802 174093923 -8321319 - L1PA4 LINE L1 -2 6153 6029 312 229 48 0 chr6 174094136 174094219 -8321023 + L1M2 LINE L1 815 901 -5948 * 9406 209 94 24 chr6 174094201 174096415 -8318827 + L1M2b LINE L1 799 2857 -4351 1989 123 3 3 chr6 174096415 174096730 -8318512 + AluSq SINE Alu 1 315 0 9406 209 94 24 chr6 174096730 174096913 -8318329 + L1M2b LINE L1 2857 3026 -4182 1909 153 3 10 chr6 174096913 174097221 -8318021 + AluSg SINE Alu 1 306 -4 9406 209 94 24 chr6 174097221 174098523 -8316719 + L1M2b LINE L1 3026 4235 -2973 2309 159 48 7 chr6 174098523 174098938 -8316304 - MSTB1 LTR MaLR 0 432 1 9406 209 94 24 chr6 174098938 174099975 -8315267 + L1M2b LINE L1 4235 5878 -1330 368 75 112 6 chr6 174100248 174100409 -8314833 + (TA)n Simple_repeat Simple_repeat 2 179 0 25 0 0 0 chr6 174100409 174100434 -8314808 + AT_rich Low_complexity Low_complexity 1 25 0 414 93 86 6 chr6 174100440 174100602 -8314640 + (TA)n Simple_repeat Simple_repeat 1 175 0 2066 146 0 0 chr6 174100856 174101151 -8314091 - AluSx SINE Alu -17 295 1 2293 104 0 0 chr6 174101533 174101832 -8313410 - AluSg SINE Alu -11 299 1 240 240 10 90 chr6 174102438 174102538 -8312704 - LTR33 LTR ERVL -426 95 4 431 318 120 30 chr6 174103847 174104363 -8310879 - L2 LINE L2 -30 3283 2708 230 274 119 0 chr6 174104579 174104663 -8310579 - L2 LINE L2 -2 3270 3177 1266 227 59 64 chr6 174106358 174106927 -8308315 - L1ME LINE L1 -441 5725 5155 1446 192 30 36 chr6 174106927 174107229 -8308013 - AluJo SINE Alu -12 300 1 1266 227 59 64 chr6 174107229 174107374 -8307868 - L1ME LINE L1 -1011 5155 5011 2287 94 3 7 chr6 174107374 174107693 -8307549 - AluSx SINE Alu 0 312 1 1266 227 59 64 chr6 174107693 174107969 -8307273 - L1ME LINE L1 -1155 5011 4744 548 250 52 9 chr6 174108131 174108343 -8306899 - L1ME LINE L1 -1395 4751 4531 371 302 8 39 chr6 174108343 174108472 -8306770 + L2 LINE L2 2952 3076 -196 2005 190 46 0 chr6 174108949 174109322 -8305920 - MLT1B LTR MaLR 0 390 1 22 70 0 0 chr6 174109361 174109404 -8305838 + AT_rich Low_complexity Low_complexity 1 43 0 1783 167 4 4 chr6 174110194 174110506 -8304736 + AluJo SINE Alu 1 312 0 723 251 38 51 chr6 174110709 174111079 -8304163 - L1MC4 LINE L1 0 8042 7678 22 35 0 0 chr6 174111079 174111108 -8304134 + AT_rich Low_complexity Low_complexity 1 29 0 1279 217 40 78 chr6 174111416 174111891 -8303351 + MLT1C LTR MaLR 6 462 -5 390 278 0 0 chr6 174111911 174112091 -8303151 + (TG)n Simple_repeat Simple_repeat 1 180 0 387 169 0 0 chr6 174113830 174113901 -8301341 + (TG)n Simple_repeat Simple_repeat 2 72 0 204 286 60 48 chr6 174114336 174114420 -8300822 + MIR SINE MIR 57 141 -67 218 297 72 45 chr6 174115498 174115609 -8299633 - L2 LINE L2 -20 3293 3180 1280 236 102 22 chr6 174115968 174116465 -8298777 - MER34 LTR ERV1 0 542 13 228 270 59 72 chr6 174116606 174116843 -8298399 - L2 LINE L2 -174 3139 2906 223 169 56 22 chr6 174116859 174116948 -8298294 + (TG)n Simple_repeat Simple_repeat 2 93 0 440 301 37 24 chr6 174116957 174117203 -8298039 - L2 LINE L2 -401 2913 2665 348 321 74 28 chr6 174117871 174118086 -8297156 + L2 LINE L2 2172 2396 -918 235 290 50 0 chr6 174118318 174118418 -8296824 - L2 LINE L2 0 3313 3209 185 349 12 0 chr6 174118433 174118516 -8296726 + MIR SINE MIR 170 253 -9 622 313 94 8 chr6 174119111 174119570 -8295672 + L2 LINE L2 2556 3060 -253 585 284 49 0 chr6 174120146 174120329 -8294913 - MER58A DNA MER1_type 0 224 33 2158 103 0 0 chr6 174121102 174121425 -8293817 - AluY SINE Alu 0 323 1 1933 139 6 49 chr6 174121781 174122105 -8293137 + AluSx SINE Alu 3 312 0 27 0 0 0 chr6 174123355 174123382 -8291860 + AT_rich Low_complexity Low_complexity 1 27 0 222 260 0 55 chr6 174123683 174123756 -8291486 + L2 LINE L2 3237 3305 -8 2145 126 7 3 chr6 174123813 174124123 -8291119 + AluSx SINE Alu 1 311 -1 2450 69 0 0 chr6 174124163 174124454 -8290788 + AluY SINE Alu 1 291 -20 224 321 131 54 chr6 174125631 174125852 -8289390 + L2 LINE L2 3035 3272 0 2005 210 116 10 chr6 174127070 174127560 -8287682 - MLT1F LTR MaLR 0 542 1 2098 153 14 6 chr6 174128555 174128915 -8286327 - MLT1A1 LTR MaLR -2 363 1 2214 85 20 0 chr6 174131387 174131682 -8283560 - AluY SINE Alu -10 301 1 28 48 0 0 chr6 174132916 174132958 -8282284 + AT_rich Low_complexity Low_complexity 1 42 0 3447 202 73 14 chr6 174133653 174134793 -8280449 - L1MB5 LINE L1 -7 6167 4958 930 246 120 11 chr6 174134821 174135288 -8279954 - Charlie7 DNA MER1_type -274 2338 1821 477 282 64 11 chr6 174135448 174135636 -8279606 - L1MC5 LINE L1 -1153 6808 6611 27 0 0 0 chr6 174135981 174136008 -8279234 + AT_rich Low_complexity Low_complexity 1 27 0 2312 96 0 0 chr6 174136008 174136301 -8278941 - AluSx SINE Alu -19 293 1 666 289 69 46 chr6 174136566 174137131 -8278111 - L1MC5 LINE L1 -1877 5931 5354 1373 292 182 34 chr6 174137131 174138652 -8276590 - Charlie7 DNA MER1_type -835 1777 31 345 311 8 0 chr6 174138667 174138786 -8276456 + MIR SINE MIR 40 158 -50 1950 143 7 0 chr6 174139172 174139451 -8275791 + AluSx SINE Alu 3 283 -29 464 88 53 35 chr6 174139572 174139743 -8275499 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 426 57 113 0 chr6 174139731 174139890 -8275352 + (TA)n Simple_repeat Simple_repeat 2 178 0 * 284 145 43 0 chr6 174139890 174139959 -8275283 + (TTATA)n Simple_repeat Simple_repeat 5 76 0 543 48 98 12 chr6 174139959 174140288 -8274954 + (TA)n Simple_repeat Simple_repeat 1 357 0 25 0 0 0 chr6 174140494 174140519 -8274723 + AT_rich Low_complexity Low_complexity 1 25 0 201 215 31 0 chr6 174140673 174140738 -8274504 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 417 273 0 8 chr6 174140952 174141073 -8274169 - L1MC4 LINE L1 -5 8037 7918 3323 238 123 23 chr6 174141193 174142949 -8272293 - L1MC4 LINE L1 -113 7929 5944 1279 221 252 13 chr6 174142958 174143501 -8271741 + MER76 LTR ERV 15 687 -1 546 238 109 29 chr6 174143515 174143725 -8271517 - L1MC4 LINE L1 -1870 5938 5712 23 0 0 0 chr6 174144896 174144919 -8270323 + AT_rich Low_complexity Low_complexity 1 23 0 359 318 55 55 chr6 174145967 174146203 -8269039 + MIR SINE MIR 14 249 -13 2490 78 0 0 chr6 174146776 174147082 -8268160 - AluY SINE Alu -5 306 1 2334 97 3 0 chr6 174148494 174148793 -8266449 + AluSq SINE Alu 1 300 -13 255 114 0 0 chr6 174149089 174149133 -8266109 + (A)n Simple_repeat Simple_repeat 1 44 0 2346 104 0 0 chr6 174149579 174149878 -8265364 + AluSg SINE Alu 1 299 -11 441 72 52 10 chr6 174149879 174149976 -8265266 + (TA)n Simple_repeat Simple_repeat 2 102 0 31 0 0 0 chr6 174150175 174150206 -8265036 + AT_rich Low_complexity Low_complexity 1 31 0 5307 164 31 51 chr6 174150420 174151765 -8263477 - L1PA16 LINE L1 -1 6165 4795 4224 133 62 70 chr6 174151765 174152556 -8262686 - LTR1 LTR ERV1 0 785 1 5307 164 31 51 chr6 174152556 174152892 -8262350 - L1PA16 LINE L1 -1371 4795 4454 195 42 0 0 chr6 174152892 174152916 -8262326 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 2117 135 10 0 chr6 174152923 174153226 -8262016 - AluSx SINE Alu -6 306 1 5307 164 31 51 chr6 174153226 174153388 -8261854 - L1PA16 LINE L1 -1718 4448 4371 22 80 0 0 chr6 174153654 174153704 -8261538 + AT_rich Low_complexity Low_complexity 1 50 0 2399 49 42 0 chr6 174153744 174154032 -8261210 - AluY SINE Alu -11 300 1 27 29 0 0 chr6 174154034 174154068 -8261174 + AT_rich Low_complexity Low_complexity 1 34 0 2280 92 20 13 chr6 174154313 174154619 -8260623 - AluSx SINE Alu -2 310 3 521 274 86 43 chr6 174155626 174155860 -8259382 - MIR SINE MIR -10 252 9 276 349 45 61 chr6 174156291 174156555 -8258687 + L2 LINE L2 3004 3263 -9 310 237 0 40 chr6 174156558 174156634 -8258608 + GA-rich Low_complexity Low_complexity 4 76 0 1388 199 35 39 chr6 174158586 174158872 -8256370 - AluJo SINE Alu -27 285 1 1883 158 20 0 chr6 174160255 174160558 -8254684 - AluSq SINE Alu 0 313 5 25 51 0 0 chr6 174160988 174161027 -8254215 + AT_rich Low_complexity Low_complexity 1 39 0 202 259 143 27 chr6 174161302 174161414 -8253828 - MIR SINE MIR -57 205 81 243 88 0 0 chr6 174162892 174162926 -8252316 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 288 0 0 0 chr6 174162925 174162957 -8252285 + (GA)n Simple_repeat Simple_repeat 2 33 0 315 266 65 65 chr6 174162958 174163127 -8252115 - MIR SINE MIR -24 238 70 2356 152 19 94 chr6 174163650 174164117 -8251125 - MSTB1 LTR MaLR 0 432 1 300 267 96 103 chr6 174164338 174164777 -8250465 + L1ME4a LINE L1 4695 5135 -1011 2471 38 0 0 chr6 174164777 174165090 -8250152 + AluY SINE Alu 1 311 0 300 267 96 103 chr6 174165090 174165122 -8250120 + L1ME4a LINE L1 5135 5166 -980 2137 106 0 3 chr6 174165122 174165415 -8249827 - AluSq SINE Alu -21 292 1 300 267 96 103 chr6 174165415 174165526 -8249716 + L1ME4a LINE L1 5166 5274 -872 299 315 87 43 chr6 174165605 174166259 -8248983 + L1ME4a LINE L1 5350 6027 -94 2469 83 0 0 chr6 174166279 174166579 -8248663 - AluSc SINE Alu -9 300 1 285 354 93 8 chr6 174167119 174167356 -8247886 - MIR SINE MIR -1 261 5 2434 57 0 7 chr6 174167607 174167906 -8247336 + AluY SINE Alu 1 297 -14 2272 162 33 28 chr6 174168034 174168460 -8246782 + MSTB1 LTR MaLR 1 428 -4 546 277 61 95 chr6 174168621 174169141 -8246101 - MLT1G1 LTR MaLR -4 591 58 2081 96 6 48 chr6 174169141 174169453 -8245789 - AluSq SINE Alu -14 299 1 546 277 61 95 chr6 174169453 174169509 -8245733 - MLT1G1 LTR MaLR -537 58 2 1933 131 0 0 chr6 174169672 174169939 -8245303 + AluSx SINE Alu 36 302 -10 1513 187 32 21 chr6 174171040 174171324 -8243918 - AluJb SINE Alu -25 287 1 2778 102 0 0 chr6 174171667 174172019 -8243223 - THE1A LTR MaLR -3 352 1 186 368 151 17 chr6 174173069 174173420 -8241822 + L2 LINE L2 2874 3271 -1 1782 74 0 0 chr6 174175868 174176083 -8239159 - AluSg SINE Alu -95 215 1 466 305 15 0 chr6 174176788 174176985 -8238257 + L1MB7 LINE L1 3364 3563 -2583 3836 210 51 17 chr6 174176989 174178259 -8236983 + L1MB7 LINE L1 4856 6179 -5 240 122 0 0 chr6 174178332 174178373 -8236869 + (TG)n Simple_repeat Simple_repeat 2 42 0 1728 174 3 0 chr6 174179954 174180241 -8235001 + AluJb SINE Alu 9 296 -16 1982 104 29 16 chr6 174180265 174180573 -8234669 + AluSx SINE Alu 1 312 0 253 357 45 0 chr6 174181992 174182104 -8233138 + L2 LINE L2 3155 3271 -1 1623 180 20 0 chr6 174182399 174182693 -8232549 + AluJo SINE Alu 1 300 -12 189 0 0 0 chr6 174182694 174182715 -8232527 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 200 35 35 0 chr6 174183149 174183178 -8232064 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 180 240 156 21 chr6 174183237 174183333 -8231909 - L2 LINE L2 -184 3129 3021 22 35 0 0 chr6 174183674 174183703 -8231539 + AT_rich Low_complexity Low_complexity 1 29 0 396 290 53 35 chr6 174183938 174184107 -8231135 + MIR SINE MIR 18 189 -73 2253 136 25 33 chr6 174184666 174185033 -8230209 + THE1B LTR MaLR 1 364 0 2278 83 0 49 chr6 174185041 174185367 -8229875 - AluSg SINE Alu 0 310 1 301 337 79 11 chr6 174185498 174185676 -8229566 - MIR SINE MIR -20 242 53 556 265 141 37 chr6 174185850 174186341 -8228901 - Charlie7 DNA MER1_type -28 2584 505 368 241 26 26 chr6 174186547 174186663 -8228579 - Charlie7 DNA MER1_type -2492 120 5 5156 166 40 35 chr6 174187838 174188637 -8226605 - L1MA8 LINE L1 -4 6287 5493 1915 142 30 0 chr6 174188637 174188933 -8226309 - AluSx SINE Alu -7 305 1 5156 166 40 35 chr6 174188933 174189578 -8225664 - L1MA8 LINE L1 -798 5493 4829 2392 50 3 17 chr6 174189578 174189875 -8225367 + AluY SINE Alu 1 293 -18 5156 166 40 35 chr6 174189875 174190004 -8225238 - L1MA8 LINE L1 -1462 4829 4702 841 213 84 28 chr6 174190016 174190221 -8225021 - L1MC4 LINE L1 -157 7885 7662 2058 97 17 3 chr6 174190221 174190510 -8224732 - L1PA10 LINE L1 0 6168 5876 841 213 84 28 chr6 174190510 174190553 -8224689 - L1MC4 LINE L1 -380 7662 7623 2699 39 0 0 chr6 174190955 174191263 -8223979 + AluY SINE Alu 3 310 -1 253 228 51 38 chr6 174191516 174191595 -8223647 + L1M4 LINE L1 3781 3860 -2286 611 262 73 5 chr6 174192240 174192444 -8222798 + MIR SINE MIR 4 225 -37 349 343 34 17 chr6 174192741 174192919 -8222323 - MER5A DNA MER1_type 0 189 9 2081 125 7 0 chr6 174193603 174193891 -8221351 - AluSq SINE Alu -23 290 1 227 250 0 40 chr6 174194171 174194247 -8220995 + HAL1b LINE L1 771 843 -505 2249 105 0 0 chr6 174195374 174195678 -8219564 + AluSx SINE Alu 1 304 -8 197 108 27 0 chr6 174196124 174196161 -8219081 + GA-rich Low_complexity Low_complexity 3 40 0 2288 186 111 7 chr6 174197029 174197469 -8217773 - MER66B LTR ERV1 0 486 1 464 261 81 97 chr6 174198205 174198565 -8216677 + L1MC4a LINE L1 6355 6708 -1100 454 243 72 0 chr6 174198548 174198659 -8216583 + L1MC4 LINE L1 6848 6966 -1076 * 468 298 52 73 chr6 174198668 174199164 -8216078 + L1MC4 LINE L1 7103 7588 -454 2214 111 0 0 chr6 174199375 174199664 -8215578 + AluY SINE Alu 1 289 -22 192 200 0 0 chr6 174199699 174199744 -8215498 + (CA)n Simple_repeat Simple_repeat 2 46 0 1321 156 66 89 chr6 174200825 174201127 -8214115 + AluJb SINE Alu 1 295 -17 7384 23 1 0 chr6 174201907 174202764 -8212478 - L1P LINE L1 -993 5153 4296 8307 17 0 0 chr6 174202764 174203726 -8211516 + L1PA3 LINE L1 5220 6181 0 198 294 110 55 chr6 174204791 174204900 -8210342 - L2 LINE L2 -17 3255 3141 1891 143 7 0 chr6 174206007 174206280 -8208962 + AluSq SINE Alu 1 275 -38 2218 73 21 3 chr6 174206321 174206608 -8208634 + AluY SINE Alu 1 292 -19 519 223 127 35 chr6 174207556 174207753 -8207489 + LTR50 LTR ERVL 3 217 -578 1359 100 125 0 chr6 174209503 174209703 -8205539 + MER30 DNA MER1_type 6 230 0 23 33 0 0 chr6 174210054 174210084 -8205158 + AT_rich Low_complexity Low_complexity 1 30 0 36 23 0 0 chr6 174210143 174210186 -8205056 + AT_rich Low_complexity Low_complexity 1 43 0 388 300 35 31 chr6 174211014 174211301 -8203941 - L1MEd LINE L1 -3749 2380 2093 254 187 13 120 chr6 174212833 174212908 -8202334 - MER2 DNA MER2_type -278 67 1 345 70 0 0 chr6 174212912 174212955 -8202287 - 5S rRNA rRNA -78 43 1 639 301 70 50 chr6 174212975 174213574 -8201668 - L1MEd LINE L1 -5016 1103 493 185 211 18 0 chr6 174213715 174213772 -8201470 + (TA)n Simple_repeat Simple_repeat 1 58 0 225 315 34 0 chr6 174215069 174215158 -8200084 + L2 LINE L2 3201 3292 -21 2175 138 0 0 chr6 174215340 174215651 -8199591 + AluSx SINE Alu 1 311 -1 276 281 198 0 chr6 174215783 174215879 -8199363 + HAL1 LINE L1 1538 1652 -855 348 227 37 7 chr6 174216396 174216670 -8198572 + (CA)n Simple_repeat Simple_repeat 1 282 0 402 189 26 13 chr6 174216704 174216857 -8198385 + (CA)n Simple_repeat Simple_repeat 1 155 0 2066 224 78 17 chr6 174217025 174217551 -8197691 + MER68 LTR ERV1 3 560 -2 21 36 0 0 chr6 174218388 174218416 -8196826 + AT_rich Low_complexity Low_complexity 1 28 0 2224 119 3 0 chr6 174219131 174219441 -8195801 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr6 174220240 174220261 -8194981 + AT_rich Low_complexity Low_complexity 1 21 0 1074 233 158 0 chr6 174220273 174220565 -8194677 + MER58B DNA MER1_type 4 341 0 348 333 53 32 chr6 174221420 174221609 -8193633 + MIR SINE MIR 8 200 -62 1519 280 93 33 chr6 174222231 174222777 -8192465 + L1ME1 LINE L1 5447 6043 -123 2174 142 86 6 chr6 174222777 174223137 -8192105 + MLT1B LTR MaLR 2 390 0 1519 280 93 33 chr6 174223137 174223264 -8191978 + L1ME1 LINE L1 6043 6161 -5 2630 239 69 40 chr6 174223377 174223900 -8191342 + L1ME2 LINE L1 5043 5549 -615 1997 149 0 0 chr6 174223900 174224201 -8191041 - AluSx SINE Alu -11 301 1 2630 239 69 40 chr6 174224201 174224772 -8190470 + L1ME2 LINE L1 5549 6164 0 1881 179 32 156 chr6 174225385 174225940 -8189302 - MLT2B3 LTR ERVL 0 554 86 5600 60 0 0 chr6 174225940 174226593 -8188649 - L1PA6 LINE L1 -13 6141 5489 1881 179 32 156 chr6 174226593 174226670 -8188572 - MLT2B3 LTR ERVL -468 86 1 1053 203 152 79 chr6 174226777 174227146 -8188096 + MSTD LTR MaLR 1 396 0 1042 269 189 8 chr6 174227223 174227624 -8187618 + MLT1J LTR MaLR 1 474 -37 266 265 50 11 chr6 174228120 174228210 -8187032 - MIR SINE MIR -52 156 63 1363 205 112 74 chr6 174228686 174229159 -8186083 - MLT1E LTR MaLR -8 585 95 3017 68 3 0 chr6 174229435 174229789 -8185453 + THE1A LTR MaLR 1 355 0 420 295 160 21 chr6 174230747 174230928 -8184314 - MLT1G1 LTR MaLR -94 501 346 1899 152 48 45 chr6 174230928 174231264 -8183978 - MER1B DNA MER1_type 0 337 1 420 295 160 21 chr6 174231264 174231407 -8183835 - MLT1G1 LTR MaLR -249 346 132 2006 131 7 7 chr6 174231955 174232253 -8182989 - AluSx SINE Alu -14 298 1 192 333 49 0 chr6 174232382 174232463 -8182779 - L2 LINE L2 -1 3271 3187 1077 117 7 0 chr6 174232498 174232652 -8182590 + AluSg/x SINE Alu 137 291 -21 319 328 141 5 chr6 174233054 174233252 -8181990 + MIR SINE MIR 31 255 -7 1852 152 6 19 chr6 174233792 174234108 -8181134 - AluJb SINE Alu 0 312 1 6765 19 3 1 chr6 174234259 174234997 -8180245 + L1PA2 LINE L1 5414 6152 -3 2201 125 0 3 chr6 174236321 174236626 -8178616 - AluSx SINE Alu -8 304 1 1140 180 12 64 chr6 174237544 174237794 -8177448 + Tigger3(Golem) DNA MER2_type 2792 3028 -1 2152 128 0 3 chr6 174238074 174238380 -8176862 + AluSx SINE Alu 1 305 -7 31 58 0 0 chr6 174239205 174239257 -8175985 + AT_rich Low_complexity Low_complexity 1 52 0 211 380 48 26 chr6 174239792 174240063 -8175179 + L2 LINE L2 2594 2870 -444 245 332 41 56 chr6 174240532 174240728 -8174514 + MIR SINE MIR 20 212 -50 10506 128 25 12 chr6 174240758 174242410 -8172832 - Tigger1 DNA MER2_type 0 2418 746 2269 144 34 8 chr6 174242410 174242765 -8172477 + THE1B LTR MaLR 1 364 0 * 3791 145 10 132 chr6 174242765 174243347 -8171895 - Tigger1 DNA MER2_type -1670 748 303 1538 112 5 0 chr6 174243347 174243561 -8171681 - AluSq SINE Alu -48 265 51 3791 145 10 132 chr6 174243561 174243832 -8171410 - Tigger1 DNA MER2_type -2115 303 1 26 50 0 0 chr6 174244330 174244370 -8170872 + AT_rich Low_complexity Low_complexity 1 40 0 448 125 111 0 chr6 174244537 174244609 -8170633 - MADE1 DNA Mariner 0 80 1 306 283 127 17 chr6 174247090 174247263 -8167979 + L2 LINE L2 3117 3308 -5 24 0 0 0 chr6 174247806 174247830 -8167412 + AT_rich Low_complexity Low_complexity 1 24 0 181 200 0 0 chr6 174247841 174247871 -8167371 - L2 LINE L2 -26 3246 3217 180 77 0 0 chr6 174248210 174248236 -8167006 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1458 199 56 4 chr6 174248238 174248505 -8166737 - AluJb SINE Alu -31 281 1 1503 314 68 13 chr6 174248622 174249384 -8165858 + ERVL LTR ERVL 1924 2727 -3037 755 335 52 18 chr6 174249474 174249856 -8165386 + ERVL LTR ERVL 2839 3233 -2531 2338 307 65 30 chr6 174250170 174250918 -8164324 + ERVL LTR ERVL 3898 4719 -1045 387 0 0 0 chr6 174250918 174250961 -8164281 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 2338 307 65 30 chr6 174250961 174251602 -8163640 + ERVL LTR ERVL 4719 5336 -428 439 250 125 45 chr6 174252003 174252291 -8162951 + LTR50 LTR ERVL 7 317 -478 311 293 86 15 chr6 174252350 174252569 -8162673 + LTR33A LTR ERVL 297 501 -22 247 175 0 0 chr6 174253972 174254012 -8161230 + L2 LINE L2 3269 3308 -5 240 35 0 0 chr6 174255008 174255037 -8160205 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 405 350 69 43 chr6 174256117 174256466 -8158776 + L2 LINE L2 2914 3271 -1 1770 180 28 11 chr6 174256830 174257185 -8158057 + MLT1A1 LTR MaLR 1 361 -4 23 78 0 0 chr6 174257833 174257884 -8157358 + AT_rich Low_complexity Low_complexity 1 51 0 23 68 0 0 chr6 174257942 174257986 -8157256 + AT_rich Low_complexity Low_complexity 1 44 0 354 337 124 0 chr6 174258932 174259110 -8156132 + MIR SINE MIR 50 249 -13 188 250 0 0 chr6 174260500 174260548 -8154694 + L2 LINE L2 3261 3308 -5 215 347 56 14 chr6 174260608 174260752 -8154490 + MIR SINE MIR 41 190 -72 1617 314 106 21 chr6 174260966 174262009 -8153233 - L2 LINE L2 -175 3138 2002 204 97 0 0 chr6 174262585 174262616 -8152626 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 838 196 0 0 chr6 174263357 174263505 -8151737 - FRAM SINE Alu -31 145 1 186 150 0 0 chr6 174264293 174264333 -8150909 + (TA)n Simple_repeat Simple_repeat 2 41 0 331 324 65 29 chr6 174264704 174264874 -8150368 + MIR SINE MIR 49 224 -38 46 45 0 0 chr6 174265119 174265186 -8150056 + AT_rich Low_complexity Low_complexity 1 67 0 352 348 144 16 chr6 174265438 174265625 -8149617 + MIR SINE MIR 24 234 -28 1545 203 58 21 chr6 174265709 174266089 -8149153 - MSTD LTR MaLR 0 396 3 1492 308 99 14 chr6 174266193 174267123 -8148119 + L1MEc LINE L1 242 1250 -5146 240 28 0 0 chr6 174268071 174268107 -8147135 + Alu SINE Alu 268 303 -5 222 196 0 0 chr6 174268678 174268724 -8146518 + (TG)n Simple_repeat Simple_repeat 1 46 0 2202 64 0 7 chr6 174269048 174269329 -8145913 + AluY SINE Alu 1 279 -32 216 86 0 0 chr6 174269333 174269368 -8145874 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 943 261 0 0 chr6 174270495 174270729 -8144513 + MIR SINE MIR 8 241 -21 202 385 23 15 chr6 174270761 174270891 -8144351 + MIR SINE MIR 118 248 -14 383 244 137 15 chr6 174270923 174271054 -8144188 - MIR SINE MIR -3 259 113 645 221 107 99 chr6 174271292 174271795 -8143447 + MLT1J LTR MaLR 3 509 -2 283 273 66 82 chr6 174271907 174272090 -8143152 - L2 LINE L2 -167 3105 2926 2311 120 105 43 chr6 174273696 174274350 -8140892 - MER51A LTR ERV1 -9 625 8 311 250 48 24 chr6 174274630 174274714 -8140528 + L1MC4 LINE L1 6613 6698 -1344 1984 138 14 0 chr6 174274716 174275006 -8140236 - AluSx SINE Alu -18 294 1 1588 117 0 0 chr6 174275021 174275234 -8140008 - AluSx SINE Alu -99 213 1 2093 145 0 7 chr6 174275262 174275572 -8139670 + AluSx SINE Alu 1 308 -4 197 208 21 21 chr6 174276702 174276750 -8138492 - MIR SINE MIR -56 206 159 225 0 0 0 chr6 174276798 174276823 -8138419 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 33 25 0 0 chr6 174277394 174277434 -8137808 + AT_rich Low_complexity Low_complexity 1 40 0 1841 173 3 16 chr6 174277442 174277748 -8137494 - AluSx SINE Alu -10 302 1 641 208 81 0 chr6 174280942 174281115 -8134127 - MER112 DNA MER1_type -73 187 1 228 305 19 0 chr6 174281203 174281308 -8133934 + MER103 DNA DNA 26 132 -34 1720 184 175 138 chr6 174281308 174282292 -8132950 - LTR28 LTR ERV1 0 1020 1 204 225 0 0 chr6 174282721 174282761 -8132481 + A-rich Low_complexity Low_complexity 4 43 0 2024 156 50 31 chr6 174284456 174284995 -8130247 - MLT2A2 LTR ERVL 0 554 2 295 303 101 22 chr6 174285108 174285286 -8129956 - L1ME LINE L1 -345 5776 5585 2132 128 3 6 chr6 174286624 174286936 -8128306 - AluSx SINE Alu -1 311 1 182 301 71 9 chr6 174287255 174287368 -8127874 + L2 LINE L2 2840 2959 -313 2418 248 96 16 chr6 174287528 174288547 -8126695 + L1MC/D LINE L1 4330 5431 -768 258 265 112 28 chr6 174288538 174288782 -8126460 + L1MA10 LINE L1 5918 6332 -2 * 1203 49 0 0 chr6 174288970 174289113 -8126129 + AluY SINE Alu 156 298 -13 2870 178 64 5 chr6 174289572 174290152 -8125090 + MER44D DNA MER2_type 2 615 -90 1162 144 0 6 chr6 174290269 174290443 -8124799 - AluSg/x SINE Alu -9 303 131 957 168 50 6 chr6 174290457 174290636 -8124606 - MER2 DNA MER2_type -158 187 1 482 195 0 0 chr6 174290641 174290723 -8124519 + Tigger7 DNA MER2_type 2406 2487 0 2450 85 0 0 chr6 174290917 174291224 -8124018 + AluSg SINE Alu 1 307 -3 1497 149 76 10 chr6 174292410 174292699 -8122543 - AluSx SINE Alu -4 308 1 24 32 0 0 chr6 174292918 174292949 -8122293 + AT_rich Low_complexity Low_complexity 1 31 0 658 268 131 22 chr6 174293222 174293755 -8121487 + L1ME2 LINE L1 4811 5401 -745 636 232 125 54 chr6 174293879 174293954 -8121288 + L1ME2 LINE L1 5588 5656 -508 2290 119 3 0 chr6 174293954 174294265 -8120977 + AluSx SINE Alu 1 312 0 636 232 125 54 chr6 174294265 174294525 -8120717 + L1ME2 LINE L1 5656 5947 -217 1116 116 0 0 chr6 174294768 174294915 -8120327 - AluSg/x SINE Alu -31 281 135 1489 112 0 0 chr6 174295341 174295546 -8119696 + AluSx SINE Alu 1 205 -107 2000 121 0 17 chr6 174295661 174295951 -8119291 + AluSx SINE Alu 1 285 -27 183 42 0 0 chr6 174295951 174295975 -8119267 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 1952 128 18 0 chr6 174297079 174297361 -8117881 + AluSx SINE Alu 2 288 -24 354 23 0 0 chr6 174297968 174298011 -8117231 + (TG)n Simple_repeat Simple_repeat 2 44 0 262 213 0 0 chr6 174298145 174298206 -8117036 + (TGAA)n Simple_repeat Simple_repeat 1 61 0 303 282 227 25 chr6 174298267 174298430 -8116812 + MIR SINE MIR 20 215 -47 1113 198 146 45 chr6 174299856 174300189 -8115053 + MLT1A1 LTR MaLR 1 396 0 206 340 28 0 chr6 174300304 174300410 -8114832 - MIR SINE MIR -119 143 35 225 279 41 82 chr6 174301028 174301150 -8114092 - MIR SINE MIR -125 137 21 5177 124 14 1 chr6 174301415 174302186 -8113056 + L1PB1 LINE L1 5368 6148 -3 1572 156 3 84 chr6 174302513 174302834 -8112408 - AluJb SINE Alu -17 295 1 2098 119 3 20 chr6 174302925 174303227 -8112015 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr6 174304079 174304102 -8111140 + AT_rich Low_complexity Low_complexity 1 23 0 252 295 18 54 chr6 174304311 174304385 -8110857 + L1MC4a LINE L1 5654 5724 -2084 2142 121 3 10 chr6 174304385 174304699 -8110543 + AluSx SINE Alu 1 312 0 252 295 18 54 chr6 174304699 174304736 -8110506 + L1MC4a LINE L1 5724 5761 -2047 330 262 63 16 chr6 174304746 174304937 -8110305 + L1MC4a LINE L1 5868 6067 -1741 321 305 137 18 chr6 174305096 174305381 -8109861 + L1MC4a LINE L1 6279 6597 -1211 1485 229 88 111 chr6 174305531 174305826 -8109416 - L1MC5 LINE L1 -148 7813 7513 267 104 0 0 chr6 174305826 174305874 -8109368 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1536 182 14 7 chr6 174305876 174306156 -8109086 - AluJb SINE Alu -29 283 2 1485 229 88 111 chr6 174306156 174306168 -8109074 - L1MC5 LINE L1 -449 7512 7501 621 193 17 0 chr6 174306168 174306287 -8108955 - L1MB7 LINE L1 -16 6168 6048 1485 229 88 111 chr6 174306287 174306469 -8108773 - L1MC5 LINE L1 -460 7501 7316 2570 69 0 0 chr6 174306469 174306772 -8108470 + AluY SINE Alu 1 303 -8 1485 229 88 111 chr6 174306772 174307173 -8108069 - L1MC5 LINE L1 -645 7316 6951 2170 122 3 0 chr6 174307173 174307467 -8107775 + AluSq SINE Alu 1 295 -18 1485 229 88 111 chr6 174307467 174307801 -8107441 - L1MC5 LINE L1 -1010 6951 6611 356 289 84 71 chr6 174307807 174308115 -8107127 - L1MC4a LINE L1 -1212 6596 6285 309 26 0 0 chr6 174308360 174308398 -8106844 + (TG)n Simple_repeat Simple_repeat 2 39 0 317 310 31 0 chr6 174308437 174308566 -8106676 - L1MC4a LINE L1 -1923 5885 5753 828 289 137 13 chr6 174308577 174309222 -8106020 + L1MD3 LINE L1 6958 7774 -221 5243 156 53 29 chr6 174309232 174310271 -8104971 + L1MC1 LINE L1 5257 6320 -13 617 249 22 90 chr6 174310290 174310611 -8104631 + L1MC4 LINE L1 7689 7987 -55 25 31 0 0 chr6 174310614 174310646 -8104596 + AT_rich Low_complexity Low_complexity 1 32 0 1923 115 19 35 chr6 174310718 174311158 -8104084 + AluSx SINE Alu 1 435 0 4887 114 27 3 chr6 174311174 174311922 -8103320 - L1P LINE L1 -3316 2830 2065 2021 121 6 28 chr6 174311921 174312178 -8103064 + L1P LINE L1 2857 3105 -3041 * 2226 119 0 19 chr6 174312178 174312488 -8102754 + AluSx SINE Alu 1 304 -8 2021 121 6 28 chr6 174312488 174312585 -8102657 + L1P LINE L1 3105 3203 -2943 978 62 16 0 chr6 174312587 174312716 -8102526 + L1PA8 LINE L1 5782 5912 -260 2649 77 9 0 chr6 174312759 174313096 -8102146 + L1PA7 LINE L1 5815 6154 0 1861 145 42 42 chr6 174313479 174313816 -8101426 - MER1B DNA MER1_type 0 337 1 265 262 116 17 chr6 174314173 174314293 -8100949 + L1P4 LINE L1 5636 5766 -402 210 143 0 0 chr6 174314640 174314675 -8100567 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1923 118 4 0 chr6 174315216 174315470 -8099772 - AluSx SINE Alu -37 275 21 2500 90 3 0 chr6 174315881 174316193 -8099049 - AluSp SINE Alu 0 313 1 1724 168 81 9 chr6 174316502 174316835 -8098407 + MLT1B LTR MaLR 1 357 -33 225 0 0 0 chr6 174316936 174316961 -8098281 + (T)n Simple_repeat Simple_repeat 1 25 0 439 270 44 25 chr6 174317341 174317500 -8097742 + MLT1J1 LTR MaLR 1 162 -284 189 0 0 0 chr6 174317958 174317979 -8097263 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1832 157 0 17 chr6 174318955 174319248 -8095994 + AluJb SINE Alu 2 289 -23 860 243 114 50 chr6 174319936 174320253 -8094989 + MLT1E1 LTR MaLR 2 338 -316 289 231 87 29 chr6 174320280 174320384 -8094858 + MLT1E1 LTR MaLR 446 555 -99 1440 208 12 78 chr6 174320711 174321087 -8094155 - MLT1B LTR MaLR -7 383 35 1929 124 46 3 chr6 174321087 174321370 -8093872 + AluSx SINE Alu 1 295 -17 1440 208 12 78 chr6 174321370 174321402 -8093840 - MLT1B LTR MaLR -355 35 2 2220 119 0 0 chr6 174323631 174323933 -8091309 - AluSq SINE Alu -11 302 1 473 341 49 17 chr6 174325797 174326084 -8089158 + LTR16C LTR ERVL 187 482 -9 198 250 214 54 chr6 174326340 174326452 -8088790 + MIR SINE MIR 13 142 -120 234 0 0 0 chr6 174327613 174327639 -8087603 + (A)n Simple_repeat Simple_repeat 1 26 0 373 393 5 21 chr6 174328250 174328441 -8086801 + MIR3 SINE MIR 15 202 -6 183 264 28 69 chr6 174330016 174330088 -8085154 - L2 LINE L2 0 3313 3245 434 269 46 56 chr6 174330445 174330642 -8084600 + MIR SINE MIR 42 236 -26 484 315 56 47 chr6 174331005 174331237 -8084005 - MIR SINE MIR -21 241 8 548 219 165 0 chr6 174331543 174331707 -8083535 + MIR SINE MIR 40 230 -32 24 0 0 0 chr6 174332591 174332615 -8082627 + AT_rich Low_complexity Low_complexity 1 24 0 505 233 267 0 chr6 174332783 174332955 -8082287 + MIR SINE MIR 42 259 -3 256 88 0 0 chr6 174334157 174334191 -8081051 - LTR67 LTR ERVL -21 536 503 231 279 0 90 chr6 174334374 174334485 -8080757 + L2 LINE L2 3205 3305 -8 344 316 43 14 chr6 174335458 174335667 -8079575 + L1M4 LINE L1 4812 5026 -1120 21 57 0 0 chr6 174336275 174336310 -8078932 + AT_rich Low_complexity Low_complexity 1 35 0 1507 163 10 43 chr6 174337936 174338236 -8077006 - AluJo SINE Alu -22 290 1 304 252 115 29 chr6 174338605 174338744 -8076498 + L1ME3 LINE L1 5993 6143 -19 402 21 0 0 chr6 174339025 174339072 -8076170 + (TG)n Simple_repeat Simple_repeat 2 48 0 1365 100 25 0 chr6 174339302 174339502 -8075740 + L1MA1 LINE L1 6098 6302 0 257 197 33 0 chr6 174340902 174340963 -8074279 - MIR SINE MIR -130 132 70 21 36 0 0 chr6 174341407 174341435 -8073807 + AT_rich Low_complexity Low_complexity 1 28 0 915 169 0 7 chr6 174341742 174341896 -8073346 + Tigger1 DNA MER2_type 3 155 -2263 200 342 18 45 chr6 174342696 174342807 -8072435 + MIR SINE MIR 34 141 -67 823 253 30 0 chr6 174342988 174343190 -8072052 + MER3 DNA MER1_type 2 209 0 2282 126 47 19 chr6 174343405 174343770 -8071472 + THE1C LTR MaLR 1 375 0 318 182 0 15 chr6 174345355 174345421 -8069821 - L1MC1 LINE L1 0 6333 6269 2331 174 67 5 chr6 174345621 174346024 -8069218 + MSTA LTR MaLR 1 428 0 2012 134 11 31 chr6 174346945 174347296 -8067946 + THE1B LTR MaLR 1 344 -20 430 321 119 31 chr6 174347743 174348070 -8067172 + L3 LINE CR1 1205 1560 -17 186 306 32 0 chr6 174348421 174348483 -8066759 + L3 LINE CR1 1504 1567 -10 216 215 31 77 chr6 174348551 174348584 -8066658 - L2 LINE L2 0 3272 3242 192 97 0 0 chr6 174348584 174348615 -8066627 + (TAA)n Simple_repeat Simple_repeat 2 32 0 216 215 31 77 chr6 174348615 174348646 -8066596 - L2 LINE L2 -30 3242 3211 223 394 10 0 chr6 174349524 174349623 -8065619 + MIR SINE MIR 23 122 -140 251 260 7 130 chr6 174350329 174350483 -8064759 + MLT1L LTR MaLR 143 277 -338 2230 118 0 16 chr6 174350485 174350799 -8064443 - AluSx SINE Alu -3 309 1 1248 170 0 28 chr6 174351499 174351717 -8063525 - AluJb SINE Alu -2 310 99 200 243 27 0 chr6 174353730 174353804 -8061438 + T-rich Low_complexity Low_complexity 3 78 0 258 302 0 0 chr6 174356659 174356722 -8058520 + MIR SINE MIR 59 121 -141 222 200 0 0 chr6 174357501 174357541 -8057701 + (CATA)n Simple_repeat Simple_repeat 1 40 0 192 299 172 0 chr6 174357593 174357680 -8057562 - MIR SINE MIR -30 232 131 194 206 110 41 chr6 174357859 174357932 -8057310 - MIR SINE MIR -19 243 166 453 330 6 17 chr6 174358319 174358495 -8056747 + MIR SINE MIR 41 214 -48 991 259 73 3 chr6 174359370 174359687 -8055555 - MER58B DNA MER1_type -2 339 1 439 268 45 13 chr6 174359729 174359886 -8055356 - L1ME3 LINE L1 -1 6161 6000 1131 73 0 0 chr6 174360088 174360225 -8055017 - AluY SINE Alu -174 137 1 251 146 18 0 chr6 174360566 174360621 -8054621 + GA-rich Low_complexity Low_complexity 1 56 0 330 186 10 39 chr6 174360957 174361059 -8054183 + A-rich Low_complexity Low_complexity 4 102 0 206 345 0 12 chr6 174362328 174362412 -8052830 + GA-rich Low_complexity Low_complexity 5 87 0 192 77 0 0 chr6 174363411 174363437 -8051805 + (T)n Simple_repeat Simple_repeat 1 26 0 484 311 57 44 chr6 174364272 174364418 -8050824 + LTR33 LTR ERVL 32 175 -346 216 0 0 0 chr6 174364418 174364442 -8050800 + (GA)n Simple_repeat Simple_repeat 1 24 0 484 311 57 44 chr6 174364442 174364681 -8050561 + LTR33 LTR ERVL 175 422 -99 220 328 0 8 chr6 174365830 174365955 -8049287 + (CATATA)n Simple_repeat Simple_repeat 3 126 0 199 376 12 0 chr6 174367449 174367534 -8047708 - MIR SINE MIR -89 119 34 1077 249 39 28 chr6 174367664 174368022 -8047220 - MLT1B LTR MaLR 0 390 29 256 360 120 33 chr6 174368047 174368472 -8046770 + L2 LINE L2 2169 2630 -684 1530 265 36 20 chr6 174368500 174369061 -8046181 + MLT1E3 LTR MaLR 57 620 -4 414 39 0 0 chr6 174369207 174369259 -8045983 + (CA)n Simple_repeat Simple_repeat 2 53 0 569 278 77 38 chr6 174369973 174370365 -8044877 + L1MC4a LINE L1 5894 6300 -1508 813 73 0 0 chr6 174370737 174370846 -8044396 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 210 237 21 21 chr6 174372061 174372154 -8043088 + (TA)n Simple_repeat Simple_repeat 2 94 0 333 221 77 58 chr6 174372881 174372985 -8042257 - L2 LINE L2 -9 3304 3199 254 299 6 61 chr6 174373147 174373311 -8041931 - Charlie8 DNA MER1_type -2237 180 26 2079 135 7 0 chr6 174373370 174373666 -8041576 + AluSx SINE Alu 6 303 -9 2023 100 0 15 chr6 174375429 174375700 -8039542 - AluSx SINE Alu -33 279 13 2759 104 15 0 chr6 174375952 174376355 -8038887 - L1PA12 LINE L1 0 6168 5760 428 211 150 0 chr6 174376706 174376839 -8038403 + MLT1D LTR MaLR 322 474 -31 1326 38 0 0 chr6 174376839 174376997 -8038245 + L1PA5 LINE L1 5989 6146 -8 2297 117 0 3 chr6 174381153 174381462 -8033780 - AluSc SINE Alu -1 308 1 538 234 54 78 chr6 174381977 174382039 -8033203 + MER3 DNA MER1_type 10 72 -137 186 103 0 0 chr6 174382039 174382068 -8033174 + (CA)n Simple_repeat Simple_repeat 2 30 0 538 234 54 78 chr6 174382068 174382210 -8033032 + MER3 DNA MER1_type 72 209 0 2005 110 3 13 chr6 174383392 174383692 -8031550 + AluY SINE Alu 1 297 -14 295 340 94 19 chr6 174383717 174383876 -8031366 - L3 LINE CR1 -910 667 497 5451 127 9 14 chr6 174385176 174386432 -8028810 + L1PA6 LINE L1 4918 6174 0 461 244 76 113 chr6 174386444 174386682 -8028560 + MIR SINE MIR 31 259 -3 23 0 0 0 chr6 174386908 174386931 -8028311 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr6 174387799 174387833 -8027409 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr6 174387958 174388003 -8027239 + AT_rich Low_complexity Low_complexity 1 45 0 1682 131 8 136 chr6 174388934 174389332 -8025910 - MER7A DNA MER2_type 0 346 2 1619 181 10 33 chr6 174389743 174390047 -8025195 + AluJo SINE Alu 2 298 -14 501 17 0 0 chr6 174390098 174390156 -8025086 + (CA)n Simple_repeat Simple_repeat 1 58 0 519 242 7 13 chr6 174390707 174390856 -8024386 + MER3 DNA MER1_type 62 209 0 189 74 0 0 chr6 174391011 174391038 -8024204 + (TAGA)n Simple_repeat Simple_repeat 3 29 0 355 199 66 37 chr6 174391039 174391176 -8024066 + LTR37A LTR ERV1 296 423 -3 200 341 91 0 chr6 174391330 174391418 -8023824 + L2 LINE L2 3002 3097 -216 1984 107 14 21 chr6 174392062 174392351 -8022891 + AluSg SINE Alu 1 287 -23 2904 9 0 0 chr6 174392545 174392861 -8022381 + AluYb8 SINE Alu 1 316 -2 1924 117 0 38 chr6 174393664 174393986 -8021256 - AluSx SINE Alu 0 313 3 1681 157 3 59 chr6 174395193 174395517 -8019725 + AluJb SINE Alu 6 311 -1 554 264 14 7 chr6 174396158 174396302 -8018940 + MER2 DNA MER2_type 1 145 -200 380 184 0 0 chr6 174396305 174396381 -8018861 + L1P LINE L1 4880 4955 -1191 918 193 8 36 chr6 174396455 174396704 -8018538 + L1P LINE L1 4970 5211 -935 273 193 35 0 chr6 174396842 174396899 -8018343 - L1PA16 LINE L1 -87 6079 6021 1668 222 42 108 chr6 174398406 174399099 -8016143 + MLT1E1 LTR MaLR 7 653 -1 3669 33 0 16 chr6 174399150 174399600 -8015642 - L1PA3 LINE L1 -3 6152 5710 444 19 0 0 chr6 174399909 174399962 -8015280 + (CA)n Simple_repeat Simple_repeat 2 54 0 1608 196 34 0 chr6 174400500 174400822 -8014420 + MER7A DNA MER2_type 16 346 0 1183 190 141 70 chr6 174401265 174401692 -8013550 - MSTB2 LTR MaLR 0 457 1 180 0 0 0 chr6 174402183 174402203 -8013039 + (TA)n Simple_repeat Simple_repeat 1 20 0 24 53 0 0 chr6 174402209 174402247 -8012995 + AT_rich Low_complexity Low_complexity 1 38 0 324 0 0 0 chr6 174402360 174402396 -8012846 + (TAA)n Simple_repeat Simple_repeat 1 36 0 254 87 22 0 chr6 174402541 174402587 -8012655 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 1608 128 0 0 chr6 174402825 174403076 -8012166 - AluSc SINE Alu 0 303 53 1219 302 158 26 chr6 174405220 174406327 -8008915 + L2 LINE L2 2057 3312 -1 248 128 0 21 chr6 174407404 174407451 -8007791 + (TCTCCC)n Simple_repeat Simple_repeat 2 47 0 866 207 65 32 chr6 174409966 174410308 -8004934 + MSTD LTR MaLR 11 396 0 949 248 94 13 chr6 174410752 174411070 -8004172 + MER2 DNA MER2_type 2 345 0 237 207 81 72 chr6 174411133 174411244 -8003998 + MIR3 SINE MIR 73 184 -24 307 200 0 29 chr6 174411752 174411822 -8003420 + MER92B LTR ERV1 1 68 -568 2075 112 17 7 chr6 174411822 174412118 -8003124 + AluSg SINE Alu 1 299 -11 195 129 0 0 chr6 174412118 174412149 -8003093 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 1069 99 23 0 chr6 174412149 174412321 -8002921 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 925 197 174 13 chr6 174412495 174412800 -8002442 + MER92B LTR ERV1 142 495 -141 1987 131 7 30 chr6 174412801 174413106 -8002136 + AluSq SINE Alu 1 298 -15 435 208 24 0 chr6 174413106 174413231 -8002011 + GA-rich Low_complexity Low_complexity 1 128 0 574 147 11 141 chr6 174413240 174413417 -8001825 + MER92B LTR ERV1 483 636 0 1351 160 34 8 chr6 174414481 174414743 -8000499 + Tigger3(Golem) DNA MER2_type 2769 3037 0 193 365 156 9 chr6 174414778 174414989 -8000253 - MIR SINE MIR -19 243 2 294 287 48 7 chr6 174415710 174415844 -7999398 - MIR SINE MIR -65 143 34 23 0 0 0 chr6 174416104 174416127 -7999115 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 174416509 174416531 -7998711 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 174416850 174416878 -7998364 + AT_rich Low_complexity Low_complexity 1 28 0 183 373 87 24 chr6 174421094 174421220 -7994022 + MIR SINE MIR 20 153 -109 702 204 25 78 chr6 174421546 174421789 -7993453 + LTR37B LTR ERV1 198 425 -43 200 29 0 59 chr6 174421789 174421823 -7993419 + (TATAA)n Simple_repeat Simple_repeat 3 34 0 702 204 25 78 chr6 174421823 174421863 -7993379 + LTR37B LTR ERV1 425 466 -2 1095 209 105 22 chr6 174422419 174422734 -7992508 + MLT1B LTR MaLR 1 341 -49 334 246 47 52 chr6 174424908 174425099 -7990143 + MER31-int LTR ERV1 3330 3519 -1417 2264 81 0 3 chr6 174425180 174425464 -7989778 - AluSc SINE Alu -16 293 11 373 250 0 17 chr6 174425542 174425658 -7989584 + MER31-int LTR ERV1 3657 3770 -1166 397 172 0 159 chr6 174425808 174425959 -7989283 + MER31-int LTR ERV1 3965 4091 -845 249 33 0 0 chr6 174426123 174426153 -7989089 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1920 135 3 10 chr6 174426160 174426464 -7988778 + AluSq SINE Alu 1 302 -11 696 271 29 84 chr6 174426968 174427492 -7987750 - L1MC5 LINE L1 -775 7186 6692 229 254 17 0 chr6 174427612 174427671 -7987571 + MER5B DNA MER1_type 17 76 -102 337 276 112 40 chr6 174427838 174428312 -7986930 - L1ME4a LINE L1 -1 6120 5613 1585 231 6 3 chr6 174428749 174429113 -7986129 + MLT1A1 LTR MaLR 1 365 0 340 222 79 87 chr6 174429198 174429324 -7985918 - L2 LINE L2 -1 3312 3188 360 0 0 0 chr6 174429576 174429616 -7985626 + (CTAAT)n Simple_repeat Simple_repeat 3 42 0 1852 168 10 3 chr6 174430474 174430772 -7984470 + AluSg SINE Alu 1 300 -10 486 0 0 0 chr6 174431374 174431428 -7983814 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 296 299 87 16 chr6 174431615 174431742 -7983500 - MIR SINE MIR -10 252 117 432 228 65 0 chr6 174431806 174431898 -7983344 - MER5A DNA MER1_type -81 108 11 220 246 0 53 chr6 174432100 174432157 -7983085 - L2 LINE L2 -11 3261 3208 607 176 0 0 chr6 174433485 174433587 -7981655 + AluS SINE Alu 1 102 -211 293 288 75 34 chr6 174433863 174434009 -7981233 + MIR SINE MIR 92 243 -19 334 248 184 25 chr6 174434093 174434375 -7980867 + L2 LINE L2 2642 2968 -346 343 317 10 10 chr6 174434533 174434634 -7980608 + L2 LINE L2 3160 3260 -12 579 262 99 0 chr6 174434888 174435060 -7980182 + MER5A DNA MER1_type 1 189 0 499 153 68 79 chr6 174436688 174436865 -7978377 - MER114 LTR ERV -470 178 4 510 217 0 0 chr6 174437195 174437301 -7977941 + Tigger7 DNA MER2_type 2482 2587 0 1987 116 124 11 chr6 174437301 174437679 -7977563 - MER34C LTR ERV1 -128 457 37 22 0 0 0 chr6 174437810 174437832 -7977410 + AT_rich Low_complexity Low_complexity 1 22 0 325 275 46 23 chr6 174438199 174438330 -7976912 + MLT1J LTR MaLR 369 502 -9 21 0 0 0 chr6 174438377 174438398 -7976844 + AT_rich Low_complexity Low_complexity 1 21 0 1486 86 0 5 chr6 174438722 174438909 -7976333 - AluSg/x SINE Alu -40 270 85 264 299 48 70 chr6 174439562 174439749 -7975493 - L3 LINE CR1 -785 792 610 2157 143 48 68 chr6 174440307 174440699 -7974543 - L1MB2 LINE L1 0 6171 5790 2221 124 3 0 chr6 174440699 174440998 -7974244 - AluSq SINE Alu -13 300 1 2157 143 48 68 chr6 174440998 174441103 -7974139 - L1MB2 LINE L1 -381 5790 5684 290 309 86 16 chr6 174441353 174441505 -7973737 - MIR SINE MIR -68 194 36 600 333 53 78 chr6 174441636 174442162 -7973080 - L3 LINE CR1 -226 1351 839 325 167 0 0 chr6 174442717 174442777 -7972465 + MER53 DNA DNA 130 189 0 2124 135 34 8 chr6 174444375 174444730 -7970512 + THE1B LTR MaLR 1 364 0 2773 172 75 95 chr6 174445109 174445939 -7969303 - L1MB3 LINE L1 0 6183 5371 241 235 37 12 chr6 174446190 174446271 -7968971 + L1ME4a LINE L1 5970 6052 -69 391 248 177 43 chr6 174446415 174446556 -7968686 + MER5B DNA MER1_type 19 178 0 334 248 86 0 chr6 174446627 174446732 -7968510 + MLT1H LTR MaLR 421 534 -15 2367 160 21 0 chr6 174447126 174447545 -7967697 - L1PB4 LINE L1 -101 6055 5628 198 0 0 0 chr6 174447574 174447596 -7967646 + (A)n Simple_repeat Simple_repeat 1 22 0 * 1114 220 97 11 chr6 174447590 174447959 -7967283 + L1ME LINE L1 5272 5661 -505 5433 252 64 45 chr6 174447969 174450002 -7965240 + L1ME1 LINE L1 2850 4973 -1193 3663 22 2 16 chr6 174450002 174450449 -7964793 + L1PA2 LINE L1 5712 6152 -3 5433 252 64 45 chr6 174450449 174451662 -7963580 + L1ME1 LINE L1 4973 6161 -5 181 135 39 39 chr6 174451954 174452006 -7963236 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 216 0 0 0 chr6 174452138 174452162 -7963080 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 214 260 150 16 chr6 174454277 174454404 -7960838 - L3b LINE CR1 -166 1417 1274 2011 120 3 26 chr6 174455290 174455598 -7959644 + AluSc SINE Alu 1 301 -8 180 373 151 0 chr6 174455666 174455792 -7959450 - L2 LINE L2 -3 3269 3125 22 0 0 0 chr6 174456928 174456950 -7958292 + AT_rich Low_complexity Low_complexity 1 22 0 791 346 43 3 chr6 174457079 174457426 -7957816 - L3 LINE CR1 -4 1573 1213 574 296 49 49 chr6 174457606 174457893 -7957349 - L3 LINE CR1 -706 871 585 906 135 0 0 chr6 174458258 174458391 -7956851 + AluSq/x SINE Alu 1 133 -179 627 158 22 13 chr6 174458407 174458539 -7956703 - MSTA LTR MaLR -238 137 1 332 274 62 124 chr6 174459395 174459636 -7955606 + Charlie8 DNA MER1_type 105 1428 -989 358 191 95 36 chr6 174459741 174459825 -7955417 - MER91B DNA MER1_type -4 186 98 348 94 38 0 chr6 174460440 174460493 -7954749 - Alu SINE Alu -3 299 245 9573 151 60 8 chr6 174460497 174462226 -7953016 + Tigger1 DNA MER2_type 1 1818 -600 1823 125 0 89 chr6 174462226 174462553 -7952689 - AluSx SINE Alu -14 298 1 871 209 0 6 chr6 174462553 174462730 -7952512 + Tigger1 DNA MER2_type 2243 2418 0 288 250 28 0 chr6 174463072 174463144 -7952098 + MER81 DNA DNA 35 108 -6 234 0 0 0 chr6 174465458 174465484 -7949758 + (TCTCCC)n Simple_repeat Simple_repeat 6 31 0 5538 71 36 54 chr6 174465488 174467382 -7947860 + SVA Other Other 38 868 -792 6830 56 17 1 chr6 174467760 174469128 -7946114 + L1PA7 LINE L1 4761 6154 0 499 324 34 6 chr6 174469613 174469789 -7945453 - MIR SINE MIR -33 229 49 246 232 54 0 chr6 174469792 174469848 -7945394 - L2 LINE L2 0 3313 3255 21 0 0 0 chr6 174469996 174470017 -7945225 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr6 174470904 174470929 -7944313 + (TG)n Simple_repeat Simple_repeat 1 25 0 350 260 107 49 chr6 174472701 174473028 -7942214 - L1M4 LINE L1 -1626 4520 4175 1147 171 134 68 chr6 174473035 174473386 -7941856 + MLT1A2 LTR MaLR 1 374 0 1605 188 0 17 chr6 174473545 174473832 -7941410 + AluJb SINE Alu 1 282 -30 383 163 104 22 chr6 174473869 174474004 -7941238 - L1M4 LINE L1 -2169 3977 3832 201 180 0 0 chr6 174474072 174474122 -7941120 + (TA)n Simple_repeat Simple_repeat 2 51 0 540 272 78 47 chr6 174474172 174474764 -7940478 - L1M4 LINE L1 -2812 3334 2725 1423 291 133 15 chr6 174475020 174475635 -7939607 + L1ME1 LINE L1 119 806 -5590 288 227 72 0 chr6 174475671 174475768 -7939474 + L1ME1 LINE L1 3083 3186 -3029 748 225 112 5 chr6 174475794 174475981 -7939261 - MER58C DNA MER1_type 0 215 9 609 256 207 29 chr6 174475982 174476396 -7938846 + L1ME1 LINE L1 3195 3534 -2681 2017 114 7 4 chr6 174476396 174476700 -7938542 + AluSx SINE Alu 1 305 0 609 256 207 29 chr6 174476700 174476878 -7938364 + L1ME1 LINE L1 3534 3894 -2321 3686 241 58 32 chr6 174476889 174478192 -7937050 + L1ME1 LINE L1 4039 5374 -841 1123 183 0 30 chr6 174478195 174478425 -7936817 + AluJo SINE Alu 84 306 -6 1806 252 72 16 chr6 174478445 174479013 -7936229 + L1ME1 LINE L1 5362 5961 -274 246 81 0 0 chr6 174479033 174479070 -7936172 + (TG)n Simple_repeat Simple_repeat 2 38 0 201 314 186 17 chr6 174480888 174481006 -7934236 + MIR SINE MIR 4 141 -121 24 0 0 0 chr6 174482310 174482334 -7932908 + AT_rich Low_complexity Low_complexity 1 24 0 204 67 0 0 chr6 174482599 174482629 -7932613 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 2705 206 59 43 chr6 174483784 174485470 -7929772 + L1MC2 LINE L1 4597 6337 -7 22 0 0 0 chr6 174485658 174485680 -7929562 + AT_rich Low_complexity Low_complexity 1 22 0 1976 148 0 0 chr6 174485988 174486291 -7928951 + AluSx SINE Alu 1 303 -9 271 339 104 9 chr6 174486572 174486687 -7928555 - MIR SINE MIR -64 144 19 23 0 0 0 chr6 174486792 174486815 -7928427 + AT_rich Low_complexity Low_complexity 1 23 0 231 140 0 0 chr6 174487290 174487340 -7927902 + (TG)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr6 174487448 174487476 -7927766 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 174487749 174487770 -7927472 + AT_rich Low_complexity Low_complexity 1 21 0 207 207 17 0 chr6 174487797 174487855 -7927387 + (CAAA)n Simple_repeat Simple_repeat 3 61 0 1197 209 82 34 chr6 174488458 174488813 -7926429 + MLT1A2 LTR MaLR 2 373 -1 21 36 0 0 chr6 174488859 174488887 -7926355 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 174489723 174489755 -7925487 + AT_rich Low_complexity Low_complexity 1 32 0 2499 80 0 0 chr6 174490057 174490368 -7924874 + AluY SINE Alu 1 311 0 822 246 160 50 chr6 174490959 174491358 -7923884 + LTR40c LTR ERVL 4 446 -16 23 33 0 0 chr6 174491678 174491708 -7923534 + AT_rich Low_complexity Low_complexity 1 30 0 209 33 33 0 chr6 174492162 174492192 -7923050 + (TC)n Simple_repeat Simple_repeat 2 32 0 22 70 0 0 chr6 174492319 174492362 -7922880 + AT_rich Low_complexity Low_complexity 1 43 0 295 307 32 32 chr6 174492469 174492658 -7922584 - L1MC4a LINE L1 -1909 5899 5711 399 313 153 38 chr6 174492706 174493131 -7922111 + L2 LINE L2 2830 3303 -10 22 35 0 0 chr6 174493367 174493396 -7921846 + AT_rich Low_complexity Low_complexity 1 29 0 2083 107 24 0 chr6 174493835 174494124 -7921118 + AluSp SINE Alu 1 296 -17 2507 111 5 13 chr6 174494188 174494566 -7920676 + THE1C LTR MaLR 1 375 0 247 330 29 62 chr6 174494571 174494844 -7920398 - L1ME LINE L1 -266 5855 5592 233 295 0 0 chr6 174497059 174497120 -7918122 + MLT1L LTR MaLR 481 541 -74 636 273 71 17 chr6 174498651 174498870 -7916372 + MIR SINE MIR 33 262 0 245 311 47 19 chr6 174499590 174499696 -7915546 - MIR SINE MIR -29 233 125 1325 143 8 8 chr6 174499706 174499943 -7915299 + L1PA16 LINE L1 5929 6165 -1 26 50 0 0 chr6 174499946 174499986 -7915256 + AT_rich Low_complexity Low_complexity 1 40 0 1388 201 102 24 chr6 174500980 174501354 -7913888 - MER57A LTR ERV1 0 403 1 804 274 28 16 chr6 174501354 174501602 -7913640 - MER57A-int LTR ERV1 0 7537 7287 534 200 25 0 chr6 174501613 174501733 -7913509 - LTR54B LTR ERV1 -369 129 7 366 80 0 0 chr6 174501735 174501785 -7913457 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1493 281 79 8 chr6 174501788 174502415 -7912827 - MER57A-int LTR ERV1 -504 7033 6452 245 177 16 16 chr6 174502418 174502480 -7912762 - MER57A LTR ERV1 -341 62 1 615 197 59 26 chr6 174502722 174502874 -7912368 + MER46A DNA MER2_type 73 229 -7 255 31 0 0 chr6 174502954 174502986 -7912256 + (CA)n Simple_repeat Simple_repeat 2 33 0 243 220 17 0 chr6 174503001 174503060 -7912182 + (TA)n Simple_repeat Simple_repeat 1 60 0 803 146 17 11 chr6 174503933 174504111 -7911131 + GA-rich Low_complexity Low_complexity 2 180 0 300 214 22 56 chr6 174507594 174507683 -7907559 + L1MC4 LINE L1 1983 2068 -4358 * 333 235 26 26 chr6 174507662 174507779 -7907463 + L1MC4 LINE L1 1996 6983 -1339 13609 147 30 19 chr6 174509550 174511943 -7903299 - Tigger1 DNA MER2_type 0 2418 1 289 366 18 0 chr6 174511988 174512100 -7903142 - MIR SINE MIR -92 170 57 607 213 71 5 chr6 174513359 174513556 -7901686 + L1MA8 LINE L1 6077 6286 -5 210 320 0 0 chr6 174513878 174513928 -7901314 + (TG)n Simple_repeat Simple_repeat 1 50 0 207 114 0 0 chr6 174514432 174514467 -7900775 + (A)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr6 174514743 174514768 -7900474 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 477 0 0 0 chr6 174514767 174514820 -7900422 + (GA)n Simple_repeat Simple_repeat 2 54 0 249 310 78 17 chr6 174515121 174515237 -7900005 - L2 LINE L2 -28 3285 3163 192 40 0 0 chr6 174516219 174516244 -7898998 + (A)n Simple_repeat Simple_repeat 1 25 0 433 282 8 16 chr6 174516879 174517003 -7898239 - MIR SINE MIR -109 153 31 288 0 0 0 chr6 174517587 174517608 -7897634 + (CA)n Simple_repeat Simple_repeat 1 53 0 288 0 0 0 chr6 174517608 174517640 -7897602 + (CA)n Simple_repeat Simple_repeat 2 33 0 2058 121 3 7 chr6 174517664 174517954 -7897288 - AluSx SINE Alu -23 289 1 2288 111 0 7 chr6 174520364 174520671 -7894571 - AluSg SINE Alu -5 305 1 1462 251 72 40 chr6 174522347 174522872 -7892370 + MLT1F LTR MaLR 1 542 0 259 320 165 0 chr6 174523111 174523214 -7892028 + L2 LINE L2 3137 3256 -16 634 280 47 0 chr6 174524203 174524396 -7890846 + MLT1K LTR MaLR 186 387 -201 429 254 28 21 chr6 174524527 174524669 -7890573 + MLT1K LTR MaLR 446 588 0 1959 164 0 0 chr6 174524966 174525270 -7889972 + AluSx SINE Alu 1 304 -8 2306 109 3 0 chr6 174525595 174525899 -7889343 - AluSq SINE Alu -6 307 3 236 238 16 16 chr6 174526740 174526803 -7888439 + (CATA)n Simple_repeat Simple_repeat 4 66 0 2212 116 0 25 chr6 174527135 174527455 -7887787 + AluSx SINE Alu 1 312 0 338 250 0 28 chr6 174527570 174527678 -7887564 + HAL1b LINE L1 349 453 -895 662 262 91 97 chr6 174527961 174528528 -7886714 + L1M4 LINE L1 2670 3270 -2876 1986 162 22 3 chr6 174528528 174528886 -7886356 - MER47A DNA MER2_type 0 366 2 662 262 91 97 chr6 174528886 174529083 -7886159 + L1M4 LINE L1 3270 3467 -2679 2083 135 3 0 chr6 174529180 174529477 -7885765 + AluSx SINE Alu 2 299 -13 560 288 89 41 chr6 174529537 174529858 -7885384 + Charlie2 DNA MER1_type 65 410 -2452 1392 196 74 30 chr6 174529858 174530154 -7885088 - AluJo SINE Alu -3 309 1 560 288 89 41 chr6 174530154 174530225 -7885017 + Charlie2 DNA MER1_type 410 476 -2386 314 235 109 17 chr6 174530225 174530344 -7884898 + L2 LINE L2 2176 2305 -1009 655 277 139 50 chr6 174530395 174530854 -7884388 + L2 LINE L2 2806 3305 -8 2320 100 3 3 chr6 174531301 174531610 -7883632 + AluSg SINE Alu 1 309 -1 2146 88 4 0 chr6 174531789 174532063 -7883179 - AluSq SINE Alu -38 275 1 1173 185 78 101 chr6 174532734 174533129 -7882113 + MLT1B LTR MaLR 1 386 -4 551 320 31 12 chr6 174533306 174533562 -7881680 - MIR SINE MIR 0 262 2 238 309 55 9 chr6 174534062 174534172 -7881070 - MER5B DNA MER1_type -60 118 4 588 219 62 95 chr6 174534970 174535359 -7879883 + LTR37B LTR ERV1 6 381 -87 189 250 0 27 chr6 174536100 174536212 -7879030 + C-rich Low_complexity Low_complexity 1 109 0 1739 180 27 0 chr6 174536366 174536666 -7878576 - AluJo SINE Alu -2 310 3 368 105 0 0 chr6 174536733 174536790 -7878452 - MER116 DNA Mariner -3 77 21 21 0 0 0 chr6 174538756 174538777 -7876465 + AT_rich Low_complexity Low_complexity 1 21 0 2087 136 0 3 chr6 174541111 174541412 -7873830 + AluSx SINE Alu 1 300 -12 2202 90 3 17 chr6 174541638 174541939 -7873303 + AluY SINE Alu 2 298 -13 205 378 0 0 chr6 174542040 174542114 -7873128 + L3 LINE CR1 1383 1456 -121 1969 121 14 0 chr6 174542750 174543032 -7872210 + AluSc SINE Alu 1 286 -23 21 0 0 0 chr6 174543431 174543452 -7871790 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 174544079 174544115 -7871127 + AT_rich Low_complexity Low_complexity 1 36 0 2772 181 45 5 chr6 174545145 174545725 -7869517 + L1MB8 LINE L1 5567 6169 -9 390 42 0 0 chr6 174545825 174545873 -7869369 + (TG)n Simple_repeat Simple_repeat 2 49 0 270 191 152 146 chr6 174546614 174546792 -7868450 - MIR SINE MIR -56 206 28 498 124 0 0 chr6 174546951 174547040 -7868202 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 2190 115 9 0 chr6 174547150 174547473 -7867769 - MER1A DNA MER1_type 0 529 204 253 293 7 75 chr6 174547640 174547787 -7867455 - MER5A DNA MER1_type -4 185 49 27 49 0 0 chr6 174549107 174549148 -7866094 + AT_rich Low_complexity Low_complexity 1 41 0 2198 118 0 9 chr6 174549874 174550189 -7865053 + AluSx SINE Alu 1 312 0 213 154 0 0 chr6 174550586 174550625 -7864617 + CT-rich Low_complexity Low_complexity 4 42 0 226 111 0 0 chr6 174551001 174551037 -7864205 - L2 LINE L2 0 3313 3278 2494 191 33 62 chr6 174551124 174551666 -7863576 + L1MC1 LINE L1 5656 6175 -158 2431 88 0 7 chr6 174551666 174551974 -7863268 + AluSg1 SINE Alu 2 307 -2 2494 191 33 62 chr6 174551974 174552129 -7863113 + L1MC1 LINE L1 6175 6333 0 397 320 95 53 chr6 174552167 174553101 -7862141 + L1ME3A LINE L1 272 1244 -4875 306 276 22 8 chr6 174553390 174553524 -7861718 + L1ME3A LINE L1 4720 4855 -1274 1786 148 17 3 chr6 174553667 174553958 -7861284 - AluJb SINE Alu -17 295 1 705 272 104 25 chr6 174554230 174554815 -7860427 + L1ME3A LINE L1 5289 5929 -224 1414 80 10 15 chr6 174554856 174555055 -7860187 - AluY SINE Alu -9 302 105 471 328 91 33 chr6 174555592 174556289 -7858953 + L2 LINE L2 2228 3177 -136 225 311 96 23 chr6 174556306 174556483 -7858759 - MLT1L LTR MaLR -18 597 408 228 311 0 16 chr6 174556520 174556581 -7858661 + L2 LINE L2 3143 3202 -70 271 315 27 45 chr6 174556929 174557040 -7858202 + L2 LINE L2 3160 3268 -4 297 128 0 0 chr6 174557354 174557401 -7857841 + (ATG)n Simple_repeat Simple_repeat 1 47 0 646 288 78 0 chr6 174557420 174557639 -7857603 - MIR SINE MIR -6 256 21 287 285 156 67 chr6 174557749 174558184 -7857058 + L3 LINE CR1 839 1363 -214 295 309 65 0 chr6 174558186 174558354 -7856888 - MER63A DNA MER1_type -5 205 27 826 70 0 53 chr6 174558654 174558799 -7856443 + AluSg/x SINE Alu 172 310 0 1888 148 4 0 chr6 174559457 174559761 -7855481 + AluSg SINE Alu 1 305 0 312 309 0 32 chr6 174560406 174560529 -7854713 - MIR SINE MIR -51 211 93 1502 116 0 0 chr6 174563217 174563416 -7851826 + AluSg/x SINE Alu 113 311 -1 1906 100 85 0 chr6 174563547 174563818 -7851424 - AluSg SINE Alu -13 297 4 2409 90 0 0 chr6 174564021 174564331 -7850911 + AluSx SINE Alu 1 310 -2 3001 235 24 1 chr6 174564567 174565324 -7849918 - L1MD1 LINE L1 0 6636 5863 3670 205 57 14 chr6 174565342 174566313 -7848929 - L1MD1 LINE L1 -4189 2351 1340 1104 165 11 240 chr6 174566327 174566791 -7848451 - L1MD1 LINE L1 -6095 445 125 1796 191 64 29 chr6 174566791 174567210 -7848032 + Tigger2a DNA MER2_type 1 434 0 1104 165 11 240 chr6 174567210 174567296 -7847946 - L1MD1 LINE L1 -6415 125 21 350 248 23 39 chr6 174567690 174567819 -7847423 - MER94 DNA DNA -2 132 6 302 141 250 0 chr6 174568770 174568834 -7846408 + MER116 DNA Mariner 1 80 0 205 311 133 0 chr6 174568873 174568963 -7846279 + L2 LINE L2 3203 3304 -9 187 279 52 91 chr6 174571936 174572090 -7843152 + MIR SINE MIR 2 149 -113 456 363 70 5 chr6 174572350 174572565 -7842677 - MIR SINE MIR -8 254 26 1878 152 13 25 chr6 174572616 174572932 -7842310 + AluJo SINE Alu 1 312 0 218 344 78 0 chr6 174574164 174574254 -7840988 + MIR SINE MIR 53 149 -113 244 316 59 7 chr6 174575313 174575449 -7839793 - MER20 DNA MER1_type -43 176 34 518 339 165 6 chr6 174575500 174576004 -7839238 + L2 LINE L2 1689 2272 -1042 473 219 8 0 chr6 174576005 174576124 -7839118 + CT-rich Low_complexity Low_complexity 1 120 0 1912 121 4 0 chr6 174576125 174576397 -7838845 - AluSx SINE Alu -39 273 1 266 33 0 83 chr6 174576750 174576810 -7838432 + (TTTTTA)n Simple_repeat Simple_repeat 6 60 0 618 291 78 48 chr6 174576992 174577404 -7837838 + L1ME LINE L1 36 459 -5611 2877 177 20 3 chr6 174577637 174578235 -7837007 + L1MC3 LINE L1 7161 7768 -17 1459 275 76 53 chr6 174578248 174578658 -7836584 + L1ME LINE L1 455 854 -5407 636 167 61 53 chr6 174578658 174578790 -7836452 + FLAM_C SINE Alu 1 133 0 1459 275 76 53 chr6 174578790 174580207 -7835035 + L1ME LINE L1 854 2365 -3896 346 289 70 35 chr6 174580689 174580831 -7834411 + MIR SINE MIR 14 160 -102 2220 102 0 3 chr6 174580831 174581124 -7834118 + AluSx SINE Alu 1 292 -20 472 240 47 8 chr6 174581259 174581388 -7833854 + MIR SINE MIR 127 260 -2 391 286 21 43 chr6 174581603 174581790 -7833452 - MIR SINE MIR -23 185 35 517 305 86 38 chr6 174581944 174582419 -7832823 + Charlie2b DNA MER1_type 174 671 -2111 261 209 0 0 chr6 174582435 174582502 -7832740 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 1749 149 60 0 chr6 174582524 174582826 -7832416 - MER7A DNA MER2_type -26 320 3 2241 243 98 34 chr6 174582854 174583782 -7831460 + Charlie2a DNA MER1_type 1511 2543 -319 2960 214 25 14 chr6 174583782 174584426 -7830816 + MER82 DNA MER2_type 2 652 -1 2241 243 98 34 chr6 174584426 174584767 -7830475 + Charlie2a DNA MER1_type 2543 2861 -1 2124 118 3 16 chr6 174585049 174585184 -7830058 + AluSx SINE Alu 1 136 -176 2252 112 0 7 chr6 174585184 174585487 -7829755 + AluSg SINE Alu 1 301 -9 2124 118 3 16 chr6 174585487 174585655 -7829587 + AluSx SINE Alu 136 300 -12 1913 143 3 13 chr6 174586029 174586330 -7828912 - AluSx SINE Alu -14 298 1 24 0 0 0 chr6 174586604 174586628 -7828614 + AT_rich Low_complexity Low_complexity 1 24 0 406 310 46 2 chr6 174586767 174586965 -7828277 + MIR SINE MIR 13 254 -8 3119 179 20 20 chr6 174587090 174587753 -7827489 + L1MB8 LINE L1 5507 6169 -9 268 291 0 13 chr6 174588235 174588314 -7826928 - L2 LINE L2 -10 3303 3226 228 86 35 52 chr6 174588413 174588430 -7826812 + A-rich Low_complexity Low_complexity 1 17 -40 2296 110 7 0 chr6 174588430 174588738 -7826504 + AluSx SINE Alu 1 310 -2 228 86 35 52 chr6 174588738 174588778 -7826464 + A-rich Low_complexity Low_complexity 17 57 0 2020 100 0 19 chr6 174588778 174589047 -7826195 + AluSx SINE Alu 31 294 -18 218 193 18 0 chr6 174589693 174589750 -7825492 + (TG)n Simple_repeat Simple_repeat 2 59 0 1729 133 85 20 chr6 174590126 174590419 -7824823 + AluSx SINE Alu 1 312 0 1113 216 111 9 chr6 174590671 174591014 -7824228 + LTR40b LTR ERVL 1 378 -84 314 136 182 0 chr6 174591116 174591182 -7824060 + LTR40a LTR ERVL 442 519 0 2455 68 0 43 chr6 174591848 174592173 -7823069 + AluY SINE Alu 1 311 0 21 36 0 0 chr6 174593060 174593088 -7822154 + AT_rich Low_complexity Low_complexity 1 28 0 1539 184 0 31 chr6 174593730 174594018 -7821224 - AluJb SINE Alu -29 283 5 340 269 298 46 chr6 174594394 174594632 -7820610 + L2 LINE L2 3013 3310 -3 665 312 165 38 chr6 174594641 174595518 -7819724 + L2 LINE L2 2308 3313 0 400 322 17 0 chr6 174595810 174595928 -7819314 + L3 LINE CR1 408 527 -1050 188 321 0 37 chr6 174595977 174596058 -7819184 - L2 LINE L2 -2 3311 3234 434 339 138 23 chr6 174596116 174596544 -7818698 + L3 LINE CR1 628 1104 -473 228 67 0 0 chr6 174596817 174596847 -7818395 + (CA)n Simple_repeat Simple_repeat 2 31 0 2419 106 0 3 chr6 174596847 174597196 -7818046 + L1PB1 LINE L1 5803 6150 -1 435 335 105 29 chr6 174597224 174597433 -7817809 + L3 LINE CR1 1229 1453 -124 355 219 161 36 chr6 174597578 174597655 -7817587 - L2 LINE L2 -1 3312 3246 1765 116 52 0 chr6 174597655 174597906 -7817336 + AluSg SINE Alu 25 288 -22 355 219 161 36 chr6 174597906 174597965 -7817277 - L2 LINE L2 -67 3246 3159 2023 123 13 35 chr6 174598050 174598368 -7816874 - AluSx SINE Alu -1 311 1 299 78 20 0 chr6 174598375 174598426 -7816816 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 2143 100 7 0 chr6 174598426 174598705 -7816537 - AluSq SINE Alu -32 281 1 22 0 0 0 chr6 174598874 174598896 -7816346 + AT_rich Low_complexity Low_complexity 1 22 0 1782 59 38 0 chr6 174599517 174599753 -7815489 - L1PA5 LINE L1 -4 6150 5906 352 0 0 0 chr6 174599765 174599804 -7815438 + (TTTTA)n Simple_repeat Simple_repeat 2 170 0 2577 17 0 14 chr6 174599804 174600098 -7815144 - AluYb8 SINE Alu -28 290 1 21 0 0 0 chr6 174600104 174600125 -7815117 + AT_rich Low_complexity Low_complexity 1 21 0 855 181 143 45 chr6 174600777 174601064 -7814178 - MER33 DNA MER1_type 0 324 10 327 228 0 0 chr6 174602843 174602935 -7812307 + (TG)n Simple_repeat Simple_repeat 1 92 0 2097 85 14 14 chr6 174603071 174603354 -7811888 - AluSc SINE Alu -26 283 1 2387 67 0 45 chr6 174603365 174603679 -7811563 - AluSp SINE Alu -13 300 1 184 330 34 11 chr6 174604137 174604225 -7811017 - MIR SINE MIR -113 149 60 5230 172 72 27 chr6 174605905 174606535 -7808707 - Tigger3b DNA MER2_type -1797 1231 631 2007 139 0 10 chr6 174606535 174606836 -7808406 - AluSx SINE Alu -14 298 1 5230 172 72 27 chr6 174606836 174607093 -7808149 - Tigger3b DNA MER2_type -2397 631 387 2258 99 3 3 chr6 174607093 174607386 -7807856 + AluSc SINE Alu 1 293 -16 5230 172 72 27 chr6 174607386 174607675 -7807567 - Tigger3b DNA MER2_type -2641 387 1 1950 143 10 0 chr6 174608117 174608284 -7806958 - AluSx SINE Alu -16 296 123 189 0 0 0 chr6 174608284 174608305 -7806937 + (TG)n Simple_repeat Simple_repeat 2 22 0 1950 143 10 0 chr6 174608305 174608430 -7806812 - AluSx SINE Alu -189 123 1 326 242 140 57 chr6 174610110 174610267 -7804975 - L3 LINE CR1 -24 1553 1384 307 223 21 32 chr6 174610508 174610602 -7804640 - LTR16B LTR ERVL -6 458 366 297 267 26 0 chr6 174610605 174610721 -7804521 + L1ME1 LINE L1 6030 6148 -18 25 31 0 0 chr6 174610721 174610753 -7804489 + AT_rich Low_complexity Low_complexity 1 32 0 243 189 0 0 chr6 174610838 174610891 -7804351 + GA-rich Low_complexity Low_complexity 1 53 0 725 326 20 23 chr6 174610911 174611301 -7803941 + L1MC4a LINE L1 5471 5859 -1949 539 325 138 31 chr6 174611568 174611953 -7803289 - L2 LINE L2 -613 2701 2276 225 217 0 33 chr6 174613519 174613579 -7801663 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 327 311 9 19 chr6 174613866 174613972 -7801270 - L1MC/D LINE L1 -2172 5636 5532 2316 109 0 3 chr6 174614095 174614397 -7800845 + AluSx SINE Alu 1 301 -11 753 163 0 35 chr6 174615101 174615242 -7800000 + AluJo SINE Alu 1 136 -176 225 0 0 0 chr6 174615335 174615360 -7799882 + (T)n Simple_repeat Simple_repeat 1 25 0 319 293 158 22 chr6 174615862 174616084 -7799158 + MIR SINE MIR 8 259 -3 333 291 88 84 chr6 174616096 174616381 -7798861 - L2 LINE L2 -40 3232 2947 207 0 0 0 chr6 174616385 174616408 -7798834 + (TTCC)n Simple_repeat Simple_repeat 4 26 0 1639 126 115 11 chr6 174618159 174618428 -7796814 + AluSg SINE Alu 1 297 -13 1081 169 0 0 chr6 174618428 174618594 -7796648 + AluSg/x SINE Alu 134 299 -13 1066 92 0 39 chr6 174619824 174619977 -7795265 + AluSq/x SINE Alu 1 147 -166 2302 100 0 6 chr6 174619977 174620288 -7794954 + AluY SINE Alu 1 309 -2 197 295 62 78 chr6 174621141 174621270 -7793972 + MIR3 SINE MIR 60 186 -22 1305 233 174 20 chr6 174621368 174621904 -7793338 + MLT2F LTR ERVL 1 618 -45 201 281 167 9 chr6 174621937 174622051 -7793191 + MIR SINE MIR 131 262 0 1949 143 44 0 chr6 174623275 174623569 -7791673 + AluSx SINE Alu 1 307 -5 242 336 151 14 chr6 174623930 174624076 -7791166 + MIR SINE MIR 49 214 -48 204 273 0 0 chr6 174624533 174624577 -7790665 + L2 LINE L2 3262 3305 -8 1538 125 45 11 chr6 174625080 174625367 -7789875 + L1MA4 LINE L1 6004 6300 0 276 100 0 0 chr6 174625683 174625723 -7789519 + (T)n Simple_repeat Simple_repeat 1 40 0 1808 67 4 0 chr6 174625741 174625966 -7789276 - AluSp SINE Alu -1 312 87 320 337 127 41 chr6 174626316 174626842 -7788400 + L2 LINE L2 2703 3272 0 2300 87 10 6 chr6 174627467 174627779 -7787463 - AluSq SINE Alu 0 313 1 26 50 0 0 chr6 174628129 174628169 -7787073 + AT_rich Low_complexity Low_complexity 1 40 0 1447 205 40 7 chr6 174628191 174628464 -7786778 + AluJo SINE Alu 1 282 -30 2149 116 0 26 chr6 174628652 174628963 -7786279 - AluSx SINE Alu -9 303 1 23 0 0 0 chr6 174629271 174629294 -7785948 + AT_rich Low_complexity Low_complexity 1 23 0 1703 180 14 0 chr6 174629481 174629765 -7785477 - AluJo SINE Alu -24 288 1 21 36 0 0 chr6 174629926 174629954 -7785288 + AT_rich Low_complexity Low_complexity 1 28 0 280 395 51 6 chr6 174630041 174630198 -7785044 - MIR3 SINE MIR -23 185 22 2140 111 0 40 chr6 174630446 174630771 -7784471 - AluSx SINE Alu 0 312 1 191 103 26 0 chr6 174631355 174631394 -7783848 + GA-rich Low_complexity Low_complexity 1 40 0 238 242 50 30 chr6 174631563 174631662 -7783580 + L1ME3A LINE L1 272 372 -5747 241 203 16 16 chr6 174631745 174631809 -7783433 + L1 LINE L1 4754 4817 -1329 549 294 112 22 chr6 174631892 174632259 -7782983 + L1ME3A LINE L1 4987 5386 -743 368 328 40 36 chr6 174632358 174632687 -7782555 + L1ME3A LINE L1 5487 5816 -337 761 197 14 0 chr6 174632692 174632834 -7782408 + MER5A DNA MER1_type 7 150 -39 198 0 0 0 chr6 174633559 174633581 -7781661 + (A)n Simple_repeat Simple_repeat 1 22 0 537 291 98 25 chr6 174634392 174634667 -7780575 + L2 LINE L2 2487 2781 -533 21 0 0 0 chr6 174634732 174634753 -7780489 + AT_rich Low_complexity Low_complexity 1 21 0 369 352 43 37 chr6 174635016 174635178 -7780064 + L2 LINE L2 3110 3272 0 223 348 14 72 chr6 174635214 174635297 -7779945 + MIR3 SINE MIR 15 88 -120 2221 118 8 33 chr6 174635297 174635661 -7779581 - THE1A LTR MaLR 0 355 1 223 348 14 72 chr6 174635661 174635715 -7779527 + MIR3 SINE MIR 88 144 -64 653 94 0 0 chr6 174636077 174636198 -7779044 + AluJb SINE Alu 201 321 0 22 0 0 0 chr6 174637073 174637095 -7778147 + AT_rich Low_complexity Low_complexity 1 22 0 2044 127 3 3 chr6 174637948 174638259 -7776983 + AluSx SINE Alu 1 311 0 24 0 0 0 chr6 174639168 174639192 -7776050 + AT_rich Low_complexity Low_complexity 1 24 0 1906 149 30 0 chr6 174640504 174640799 -7774443 + AluSx SINE Alu 1 304 -8 365 151 0 14 chr6 174640803 174640876 -7774366 + GA-rich Low_complexity Low_complexity 1 72 0 2186 117 27 0 chr6 174641080 174641379 -7773863 + AluSx SINE Alu 2 308 -4 848 147 8 0 chr6 174641955 174642084 -7773158 + FLAM_C SINE Alu 1 130 -3 2280 125 0 0 chr6 174642385 174642688 -7772554 - AluSq SINE Alu -8 305 3 2115 112 3 37 chr6 174643777 174644099 -7771143 + AluSx SINE Alu 1 311 -1 205 397 52 0 chr6 174644138 174644254 -7770988 - L2 LINE L2 -3 3269 3148 539 182 11 155 chr6 174644437 174644557 -7770685 + MER5B DNA MER1_type 19 104 -74 2331 72 0 29 chr6 174644557 174644863 -7770379 - AluY SINE Alu -14 297 1 539 182 11 155 chr6 174644863 174644929 -7770313 + MER5B DNA MER1_type 104 178 0 1880 142 3 3 chr6 174645686 174645974 -7769268 - AluSx SINE Alu -24 288 1 1444 88 0 0 chr6 174646316 174646498 -7768744 + AluSp SINE Alu 122 303 -10 858 152 0 8 chr6 174647275 174647400 -7767842 + FLAM_C SINE Alu 1 124 -19 21 0 0 0 chr6 174647400 174647421 -7767821 + AT_rich Low_complexity Low_complexity 1 21 0 183 177 21 42 chr6 174648944 174649040 -7766202 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 1946 151 0 0 chr6 174649427 174649731 -7765511 - AluJb SINE Alu -8 304 1 2262 107 10 7 chr6 174650688 174650988 -7764254 + AluSx SINE Alu 1 301 -11 822 159 0 0 chr6 174651042 174651168 -7764074 + FLAM_C SINE Alu 1 126 -7 365 158 42 108 chr6 174651296 174651416 -7763826 + MIR SINE MIR 80 191 -71 206 177 18 168 chr6 174652459 174652572 -7762670 + MIR SINE MIR 57 152 -110 682 295 63 40 chr6 174652586 174653061 -7762181 + L2 LINE L2 2828 3313 0 30 21 0 21 chr6 174653141 174653172 -7762070 + AT_rich Low_complexity Low_complexity 1 32 -15 1613 166 50 11 chr6 174653172 174653450 -7761792 - AluJb SINE Alu -23 289 1 30 21 0 21 chr6 174653450 174653466 -7761776 + AT_rich Low_complexity Low_complexity 32 47 0 1902 88 0 0 chr6 174653677 174653916 -7761326 + AluSg SINE Alu 1 239 -71 2084 86 12 89 chr6 174655318 174655644 -7759598 + AluSq SINE Alu 1 301 -12 578 150 0 80 chr6 174655992 174656105 -7759137 + FRAM SINE Alu 43 146 -30 261 0 0 0 chr6 174656110 174656139 -7759103 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1916 149 14 0 chr6 174656180 174656476 -7758766 - AluSx SINE Alu -7 305 6 1436 150 181 75 chr6 174656820 174657155 -7758087 - LTR47A LTR ERVL 0 452 67 2360 89 3 16 chr6 174657155 174657470 -7757772 + AluSp SINE Alu 1 311 -2 1436 150 181 75 chr6 174657470 174657533 -7757709 - LTR47A LTR ERVL -385 67 12 338 264 40 101 chr6 174657733 174657960 -7757282 + MIR SINE MIR 1 213 -49 2028 145 3 3 chr6 174658082 174658386 -7756856 + AluSx SINE Alu 1 304 -8 1433 104 47 0 chr6 174658392 174658585 -7756657 + AluSx SINE Alu 1 202 -110 4055 77 11 15 chr6 174658585 174659133 -7756109 - LTR8 LTR ERV1 0 691 146 253 62 0 0 chr6 174659128 174659160 -7756082 - LTR8 LTR ERV1 -656 35 4 * 721 123 0 0 chr6 174659160 174659266 -7755976 + AluSx SINE Alu 196 301 -11 2165 116 0 13 chr6 174660549 174660851 -7754391 + AluSx SINE Alu 1 298 -14 190 311 58 10 chr6 174660899 174661002 -7754240 + MIR SINE MIR 41 148 -114 2182 112 0 0 chr6 174661010 174661296 -7753946 + AluSx SINE Alu 15 300 -12 240 235 0 0 chr6 174662697 174662748 -7752494 + (TA)n Simple_repeat Simple_repeat 1 51 0 1945 154 7 3 chr6 174662934 174663233 -7752009 + AluSx SINE Alu 1 300 -12 203 256 0 0 chr6 174664204 174664247 -7750995 + (CATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr6 174664307 174664343 -7750899 + AT_rich Low_complexity Low_complexity 1 36 0 287 250 0 0 chr6 174664438 174664498 -7750744 - MER5B DNA MER1_type 0 178 119 2014 133 7 7 chr6 174665427 174665736 -7749506 + AluSx SINE Alu 4 312 0 2232 101 24 0 chr6 174667225 174667523 -7747719 - AluSx SINE Alu -7 305 1 909 151 0 0 chr6 174667526 174667665 -7747577 - AluSg/x SINE Alu -1 311 173 2317 98 3 7 chr6 174667833 174668139 -7747103 + AluSq SINE Alu 1 305 -8 318 275 324 7 chr6 174668423 174668732 -7746510 - L2 LINE L2 -26 3287 2881 277 367 68 0 chr6 174668815 174668962 -7746280 - MER5A DNA MER1_type -30 159 3 434 226 186 23 chr6 174669579 174669756 -7745486 - MIR SINE MIR -55 207 2 395 354 106 19 chr6 174670158 174670573 -7744669 - L3 LINE CR1 -101 1476 1026 299 257 46 51 chr6 174670970 174671145 -7744097 - L3 LINE CR1 -571 1006 833 271 284 93 74 chr6 174671246 174671461 -7743781 - L3 LINE CR1 -752 825 607 21 0 0 0 chr6 174671947 174671968 -7743274 + AT_rich Low_complexity Low_complexity 1 21 0 2407 82 3 0 chr6 174671980 174672284 -7742958 - AluSx SINE Alu -7 305 1 2227 106 0 19 chr6 174672312 174672624 -7742618 + AluSg SINE Alu 1 306 -4 23 33 0 0 chr6 174672945 174672975 -7742267 + AT_rich Low_complexity Low_complexity 1 30 0 2287 113 3 0 chr6 174673408 174673710 -7741532 - AluSx SINE Alu -9 303 1 2073 96 50 0 chr6 174673770 174674051 -7741191 - AluSq SINE Alu -18 295 1 261 274 24 48 chr6 174674759 174674883 -7740359 - MIR SINE MIR -66 196 76 2180 114 0 3 chr6 174674899 174675189 -7740053 - AluSq SINE Alu -24 289 1 2361 102 3 0 chr6 174675359 174675664 -7739578 - AluSc SINE Alu -3 306 1 1172 210 81 29 chr6 174676306 174676653 -7738589 + MLT1A1 LTR MaLR 1 365 0 2179 108 14 0 chr6 174676947 174677244 -7737998 - AluSx SINE Alu -11 301 1 453 275 105 96 chr6 174677550 174677874 -7737368 - LTR16C LTR ERVL 0 491 165 1232 290 111 20 chr6 174679724 174680424 -7734818 - L2 LINE L2 -775 2539 1776 1239 124 6 0 chr6 174680962 174681139 -7734103 + AluSg/x SINE Alu 133 310 0 2377 93 7 0 chr6 174681529 174681839 -7733403 + AluSp SINE Alu 1 312 -1 2106 103 35 0 chr6 174683025 174683307 -7731935 + AluSq SINE Alu 10 301 -12 429 238 56 14 chr6 174683351 174683494 -7731748 + MLT1E LTR MaLR 445 593 0 558 0 0 0 chr6 174683650 174683712 -7731530 + (TG)n Simple_repeat Simple_repeat 2 63 0 2293 112 0 0 chr6 174683775 174684078 -7731164 + AluSc SINE Alu 2 304 -5 2195 118 16 3 chr6 174684810 174685116 -7730126 - AluSx SINE Alu -1 311 2 2484 81 3 0 chr6 174685628 174685935 -7729307 - AluSp SINE Alu -4 309 2 1680 186 6 19 chr6 174685937 174686248 -7728994 - AluSx SINE Alu -5 307 1 1640 75 0 5 chr6 174686274 174686475 -7728767 + AluY SINE Alu 99 298 -13 185 352 67 22 chr6 174688480 174688659 -7726583 - L2 LINE L2 -497 2817 2631 15411 144 27 24 chr6 174688685 174690328 -7724914 + L1MA1 LINE L1 11 1648 -5917 2457 77 0 7 chr6 174690328 174690638 -7724604 + AluY SINE Alu 1 308 -3 15411 144 27 24 chr6 174690638 174691372 -7723870 + L1MA1 LINE L1 1648 2378 -5187 2332 111 0 0 chr6 174691372 174691679 -7723563 + AluSc SINE Alu 1 307 -2 15411 144 27 24 chr6 174691679 174692708 -7722534 + L1MA1 LINE L1 2378 3402 -4163 1962 130 0 24 chr6 174692708 174693001 -7722241 + AluSq SINE Alu 1 286 -27 390 21 0 0 chr6 174693001 174693048 -7722194 + (CATA)n Simple_repeat Simple_repeat 2 48 0 15411 144 27 24 chr6 174693048 174693526 -7721716 + L1MA1 LINE L1 3401 4036 -3529 10821 161 23 12 chr6 174693562 174695621 -7719621 + L1MA1 LINE L1 4523 6603 -962 6756 98 38 29 chr6 174697277 174698349 -7716893 + L1MA1 LINE L1 6576 7666 -55 2216 111 6 16 chr6 174698349 174698665 -7716577 + AluSq SINE Alu 1 313 0 6756 98 38 29 chr6 174698665 174698717 -7716525 + L1MA1 LINE L1 7666 7716 -5 3347 125 28 10 chr6 174701150 174701728 -7713514 - LTR38B LTR ERV1 -22 588 1 339 311 88 29 chr6 174701772 174702158 -7713084 - L1ME LINE L1 -322 5799 5391 382 320 29 40 chr6 174702219 174702394 -7712848 - L1ME LINE L1 -850 5296 5124 2297 102 7 3 chr6 174703837 174704140 -7711102 + AluSx SINE Alu 1 304 -8 2105 113 0 0 chr6 174704625 174704945 -7710297 + AluSx SINE Alu 1 320 0 1554 218 7 0 chr6 174704956 174705241 -7710001 + AluJb SINE Alu 1 287 -25 24 53 0 0 chr6 174705243 174705281 -7709961 + AT_rich Low_complexity Low_complexity 1 38 0 35 63 0 0 chr6 174705581 174705644 -7709598 + AT_rich Low_complexity Low_complexity 1 63 0 389 236 0 18 chr6 174706724 174707062 -7708180 + (CA)n Simple_repeat Simple_repeat 1 331 0 1894 170 0 6 chr6 174707462 174707774 -7707468 + AluJb SINE Alu 1 310 -2 2234 88 7 0 chr6 174708786 174709071 -7706171 + AluSq SINE Alu 1 287 -26 187 308 15 15 chr6 174709361 174709426 -7705816 + MIR SINE MIR 88 152 -110 704 192 43 99 chr6 174710209 174710607 -7704635 + MSTD LTR MaLR 1 396 0 2566 68 0 0 chr6 174711239 174711550 -7703692 + AluY SINE Alu 1 311 0 2221 112 20 0 chr6 174712067 174712081 -7703161 - AluSg SINE Alu 0 310 298 865 66 0 29 chr6 174712081 174712217 -7703025 + (TCCCC)n Simple_repeat Simple_repeat 4 135 0 2221 112 20 0 chr6 174712217 174712506 -7702736 - AluSg SINE Alu -12 298 1 2175 105 3 10 chr6 174713016 174713312 -7701930 - AluSq SINE Alu -19 294 1 213 374 8 8 chr6 174713340 174713463 -7701779 - MIR SINE MIR -106 156 34 2209 128 3 0 chr6 174714439 174714743 -7700499 - AluSx SINE Alu -7 305 1 2120 137 0 0 chr6 174715321 174715614 -7699628 - AluSx SINE Alu -15 297 5 2469 51 0 0 chr6 174715862 174716158 -7699084 - AluY SINE Alu -15 296 1 23 68 0 0 chr6 174716828 174716872 -7698370 + AT_rich Low_complexity Low_complexity 1 44 0 227 259 0 56 chr6 174717189 174717243 -7697999 + L2 LINE L2 3201 3251 -21 22 35 0 0 chr6 174717452 174717481 -7697761 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 174718651 174718679 -7696563 + AT_rich Low_complexity Low_complexity 1 28 0 706 134 0 0 chr6 174718679 174718798 -7696444 - L1MA4A LINE L1 -5 6298 6180 1923 138 30 0 chr6 174719301 174719598 -7695644 - AluSx SINE Alu -6 306 1 27 49 0 0 chr6 174720110 174720151 -7695091 + AT_rich Low_complexity Low_complexity 1 41 0 2011 118 20 3 chr6 174721178 174721475 -7693767 + AluSx SINE Alu 1 302 -10 821 223 92 10 chr6 174721490 174721893 -7693349 - Charlie2 DNA MER1_type -1 2861 2426 2383 86 0 0 chr6 174722200 174722492 -7692750 + AluY SINE Alu 1 292 -19 2239 117 13 0 chr6 174722555 174722863 -7692379 - AluSx SINE Alu 0 312 1 438 167 56 86 chr6 174725654 174725816 -7689426 - L2 LINE L2 -7 3306 3150 2193 110 3 3 chr6 174725878 174726178 -7689064 + AluSx SINE Alu 1 300 -12 273 281 136 27 chr6 174726396 174726617 -7688625 + L1MEd LINE L1 6 250 -5869 425 357 91 0 chr6 174726754 174726804 -7688438 + L1MEd LINE L1 502 546 -5573 213 39 0 0 chr6 174726804 174726830 -7688412 + (CAA)n Simple_repeat Simple_repeat 2 27 0 425 357 91 0 chr6 174726830 174726978 -7688264 + L1MEd LINE L1 546 718 -5401 1585 255 41 14 chr6 174727290 174727804 -7687438 - L1ME3 LINE L1 -1 6161 5634 2292 138 36 19 chr6 174727861 174728274 -7686968 + MSTA LTR MaLR 1 420 -8 1029 231 96 19 chr6 174728286 174728649 -7686593 - MSTD LTR MaLR 0 396 6 486 196 15 10 chr6 174728663 174728853 -7686389 - L1ME2 LINE L1 -224 5940 5648 269 231 0 0 chr6 174729247 174729299 -7685943 - L2 LINE L2 0 3313 3262 198 333 131 46 chr6 174729601 174729989 -7685253 - L2 LINE L2 -340 2974 2554 645 296 20 5 chr6 174730673 174730869 -7684373 + MER58A DNA MER1_type 1 199 -25 27 29 0 0 chr6 174732768 174732802 -7682440 + AT_rich Low_complexity Low_complexity 1 34 0 1941 177 0 19 chr6 174733487 174733860 -7681382 - MER47A DNA MER2_type 0 366 1 503 327 237 37 chr6 174733860 174734031 -7681211 - L2 LINE L2 -700 2614 2478 1838 163 21 0 chr6 174734031 174734320 -7680922 - AluSx SINE Alu -17 295 1 503 327 237 37 chr6 174734320 174736183 -7679059 - L2 LINE L2 -836 2478 174 389 353 13 7 chr6 174736409 174736562 -7678680 - MIR3 SINE MIR -25 183 30 22 35 0 0 chr6 174736670 174736699 -7678543 + AT_rich Low_complexity Low_complexity 1 29 0 925 264 29 0 chr6 174737401 174737640 -7677602 - MIR SINE MIR -11 251 6 472 318 255 11 chr6 174738502 174738980 -7676262 + L3 LINE CR1 588 1182 -395 180 317 211 10 chr6 174739008 174739112 -7676130 + L2 LINE L2 3147 3271 -1 290 249 55 143 chr6 174739132 174739211 -7676031 + L3 LINE CR1 1213 1297 -280 2577 41 0 25 chr6 174739211 174739526 -7675716 + AluY SINE Alu 1 307 -4 290 249 55 143 chr6 174739526 174739683 -7675559 + L3 LINE CR1 1297 1428 -149 673 129 81 8 chr6 174739811 174739935 -7675307 + AluSp/q SINE Alu 181 313 0 376 328 44 22 chr6 174740340 174740520 -7674722 - MIR SINE MIR -72 190 7 21 36 0 0 chr6 174741873 174741901 -7673341 + AT_rich Low_complexity Low_complexity 1 28 0 319 333 18 9 chr6 174743574 174743685 -7671557 + L2 LINE L2 3198 3309 -4 21 36 0 0 chr6 174743753 174743781 -7671461 + AT_rich Low_complexity Low_complexity 1 28 0 1875 118 78 44 chr6 174744354 174744551 -7670691 - L1MA7 LINE L1 -4 6287 6098 2026 139 0 0 chr6 174744551 174744839 -7670403 - AluSx SINE Alu -24 288 1 1875 118 78 44 chr6 174744839 174745049 -7670193 - L1MA7 LINE L1 -193 6098 5866 623 300 18 18 chr6 174745144 174745364 -7669878 - MIR SINE MIR 0 262 43 28 48 0 0 chr6 174745737 174745779 -7669463 + AT_rich Low_complexity Low_complexity 1 42 0 2126 82 0 18 chr6 174746445 174746725 -7668517 - AluSc SINE Alu -6 303 29 210 37 0 0 chr6 174747014 174747041 -7668201 + (CA)n Simple_repeat Simple_repeat 1 27 0 764 192 8 0 chr6 174748029 174748159 -7667083 - FLAM_C SINE Alu -10 133 3 445 318 56 5 chr6 174748207 174748402 -7666840 - HAL1 LINE L1 -908 1599 1395 330 283 69 31 chr6 174748780 174748939 -7666303 + MLT1H LTR MaLR 385 549 0 1985 138 13 3 chr6 174749116 174749420 -7665822 - AluSx SINE Alu -5 307 1 917 155 0 0 chr6 174749649 174749791 -7665451 - AluSq/x SINE Alu -170 142 1 181 50 25 50 chr6 174750279 174750319 -7664923 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 2290 107 3 0 chr6 174751776 174752085 -7663157 + AluSx SINE Alu 2 311 -1 27 29 0 0 chr6 174752167 174752201 -7663041 + AT_rich Low_complexity Low_complexity 1 34 0 604 132 170 0 chr6 174752522 174752628 -7662614 - FLAM_C SINE Alu -18 125 2 488 268 245 23 chr6 174752799 174753101 -7662141 + MLT1I LTR MaLR 41 409 0 293 215 0 13 chr6 174753454 174753533 -7661709 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 2031 121 10 3 chr6 174754342 174754639 -7660603 + AluSx SINE Alu 1 299 -13 296 378 117 0 chr6 174754835 174755015 -7660227 - L2 LINE L2 -70 3202 3002 210 355 102 47 chr6 174755218 174755474 -7659768 - L2 LINE L2 -497 2817 2548 232 304 88 40 chr6 174756183 174756331 -7658911 - MIR SINE MIR -8 254 100 1710 213 26 4 chr6 174759251 174759707 -7655535 - L1PA16 LINE L1 -743 5403 4938 4770 103 25 20 chr6 174759716 174760470 -7654772 + L1PA16 LINE L1 5405 6162 -4 25 0 0 0 chr6 174760470 174760495 -7654747 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 174760773 174760803 -7654439 + AT_rich Low_complexity Low_complexity 1 30 0 2249 101 10 3 chr6 174760961 174761267 -7653975 + AluSx SINE Alu 1 308 -4 330 258 94 0 chr6 174762028 174762156 -7653086 - MER58C DNA MER1_type 0 215 76 273 175 0 0 chr6 174762156 174762196 -7653046 + Alu SINE Alu 1 40 -262 251 233 56 22 chr6 174762318 174762408 -7652834 + L2 LINE L2 3182 3274 -39 1972 90 4 0 chr6 174762447 174762702 -7652540 - AluSc SINE Alu -25 284 29 30 0 0 0 chr6 174763394 174763424 -7651818 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 174763882 174763903 -7651339 + AT_rich Low_complexity Low_complexity 1 21 0 298 271 24 12 chr6 174764232 174764317 -7650925 - MIR3 SINE MIR -54 154 69 1385 177 98 0 chr6 174764513 174764778 -7650464 + AluJo SINE Alu 3 293 -19 2069 100 0 7 chr6 174764783 174765064 -7650178 + AluSg SINE Alu 1 279 -31 29 60 0 0 chr6 174765481 174765531 -7649711 + AT_rich Low_complexity Low_complexity 1 50 0 1970 90 8 4 chr6 174766548 174766804 -7648438 - AluSq SINE Alu -6 307 51 219 253 80 27 chr6 174766989 174767064 -7648178 + L2 LINE L2 2366 2444 -870 722 224 20 51 chr6 174767111 174767365 -7647877 - LTR37B LTR ERV1 -25 443 198 977 242 63 115 chr6 174767711 174768535 -7646707 - MER31-int LTR ERV1 -885 4051 3333 327 233 7 96 chr6 174768842 174768988 -7646254 - MER31-int LTR ERV1 -1869 3067 2935 268 286 171 0 chr6 174769400 174769505 -7645737 - MER31-int LTR ERV1 -2340 2596 2474 2432 100 0 0 chr6 174770924 174771235 -7644007 + AluSx SINE Alu 1 311 -1 215 325 190 15 chr6 174772583 174772783 -7642459 + MIR SINE MIR 2 236 -26 2510 65 7 0 chr6 174773671 174773980 -7641262 - AluY SINE Alu 0 311 1 22 56 0 0 chr6 174774038 174774074 -7641168 + AT_rich Low_complexity Low_complexity 1 36 0 1760 169 0 35 chr6 174774079 174774392 -7640850 - AluJo SINE Alu -10 302 1 2084 164 6 0 chr6 174774430 174774765 -7640477 - MER7A DNA MER2_type -11 335 1 29 28 0 0 chr6 174774972 174775008 -7640234 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr6 174775078 174775114 -7640128 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chr6 174775758 174775786 -7639456 + (A)n Simple_repeat Simple_repeat 1 28 0 2322 105 0 0 chr6 174776186 174776490 -7638752 - AluSx SINE Alu -8 304 1 1800 173 63 6 chr6 174776590 174776955 -7638287 + MLT2C1 LTR ERVL 12 397 0 537 267 9 9 chr6 174776982 174777098 -7638144 - L2 LINE L2 -10 3303 3188 448 260 8 41 chr6 174777125 174777248 -7637994 + MER94 DNA DNA 1 119 -15 323 106 0 0 chr6 174777432 174777479 -7637763 + Alu SINE Alu 248 294 -8 2762 7 0 3 chr6 174778124 174778429 -7636813 + AluYa5 SINE Alu 1 304 -7 243 0 0 0 chr6 174778928 174778955 -7636287 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 836 224 56 0 chr6 174779797 174779993 -7635249 - MER20 DNA MER1_type -3 216 10 754 168 0 36 chr6 174780467 174780604 -7634638 + FLAM_C SINE Alu 2 133 0 309 109 0 0 chr6 174781121 174781176 -7634066 + (TG)n Simple_repeat Simple_repeat 2 56 0 303 371 35 14 chr6 174781391 174781534 -7633708 + MIR SINE MIR 39 184 -78 204 323 138 46 chr6 174781833 174782028 -7633214 - MIR SINE MIR -49 213 1 608 300 12 0 chr6 174782110 174782270 -7632972 - MIR SINE MIR -90 172 11 1440 127 3 25 chr6 174782461 174782744 -7632498 - THE1C LTR MaLR 0 375 1 29 47 0 0 chr6 174782916 174782959 -7632283 + AT_rich Low_complexity Low_complexity 1 43 0 275 333 0 0 chr6 174784114 174784201 -7631041 - MER117 DNA MER1_type -105 92 6 284 240 16 116 chr6 174784853 174784974 -7630268 + L2 LINE L2 3164 3272 0 2109 103 33 0 chr6 174786197 174786537 -7628705 + AluSx SINE Alu 1 350 0 21 71 0 0 chr6 174787955 174787997 -7627245 + AT_rich Low_complexity Low_complexity 1 42 0 2242 105 3 0 chr6 174788788 174789082 -7626160 + AluSp SINE Alu 1 295 -18 24 53 0 0 chr6 174789609 174789647 -7625595 + AT_rich Low_complexity Low_complexity 1 38 0 1000 184 108 0 chr6 174789647 174789859 -7625383 - L1PB4 LINE L1 -13 6143 5909 811 117 0 8 chr6 174789873 174790001 -7625241 - L1PB4 LINE L1 -449 5707 5581 2720 211 2 8 chr6 174790058 174790668 -7624574 - L1PB4 LINE L1 -824 5322 4717 483 273 87 7 chr6 174790965 174791115 -7624127 - MIR SINE MIR -20 242 81 193 256 0 23 chr6 174791498 174791541 -7623701 + MIR3 SINE MIR 115 156 -52 22 70 0 0 chr6 174791684 174791727 -7623515 + AT_rich Low_complexity Low_complexity 1 43 0 6205 74 22 9 chr6 174791748 174792735 -7622507 - L1PA8A LINE L1 -28 6103 5109 8028 115 6 6 chr6 174792735 174793942 -7621300 + L1PA8A LINE L1 3884 5090 -1056 1185 228 21 0 chr6 174795508 174795749 -7619493 + MIR SINE MIR 9 254 -8 214 261 0 0 chr6 174796697 174796743 -7618499 + (ATGGTG)n Simple_repeat Simple_repeat 4 49 0 296 369 45 19 chr6 174796778 174796935 -7618307 - MIR SINE MIR -96 166 6 2446 71 0 0 chr6 174799027 174799324 -7615918 + AluSc SINE Alu 1 297 -12 210 167 12 60 chr6 174799542 174799626 -7615616 + A-rich Low_complexity Low_complexity 2 81 0 21 0 0 0 chr6 174800361 174800382 -7614860 + AT_rich Low_complexity Low_complexity 1 21 0 333 68 0 0 chr6 174800494 174800538 -7614704 + (TG)n Simple_repeat Simple_repeat 2 45 0 247 369 14 9 chr6 174800669 174800883 -7614359 + L1ME LINE L1 5578 5792 -329 1714 156 65 0 chr6 174801219 174801494 -7613748 - AluJb SINE Alu -19 293 1 361 348 38 30 chr6 174801671 174801907 -7613335 + MIR SINE MIR 13 250 -12 334 0 0 0 chr6 174802837 174802874 -7612368 + (TTTA)n Simple_repeat Simple_repeat 4 180 0 2097 92 0 14 chr6 174802874 174803157 -7612085 - AluSc SINE Alu -30 279 1 2004 122 10 0 chr6 174804589 174804892 -7610350 + AluSx SINE Alu 1 306 -6 198 0 0 0 chr6 174805275 174805297 -7609945 + (A)n Simple_repeat Simple_repeat 1 22 0 3239 227 43 37 chr6 174805615 174806591 -7608651 - L1ME1 LINE L1 -7 6159 5190 2099 123 3 3 chr6 174806591 174806883 -7608359 - AluSx SINE Alu -20 292 1 333 0 0 0 chr6 174806883 174806920 -7608322 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1982 116 11 14 chr6 174806927 174807211 -7608031 - AluSq SINE Alu -29 284 2 3239 227 43 37 chr6 174807211 174807376 -7607866 - L1ME1 LINE L1 -981 5185 5002 184 209 15 15 chr6 174808018 174808085 -7607157 + (TA)n Simple_repeat Simple_repeat 1 67 0 261 243 10 29 chr6 174808123 174808226 -7607016 + (TA)n Simple_repeat Simple_repeat 1 101 0 3256 121 80 69 chr6 174809171 174809798 -7605444 + MER51A LTR ERV1 1 634 0 201 39 0 0 chr6 174809844 174809870 -7605372 + (CATATA)n Simple_repeat Simple_repeat 3 28 0 278 289 42 53 chr6 174809870 174810060 -7605182 + L1ME3 LINE L1 5596 5783 -338 3091 125 7 51 chr6 174810064 174810609 -7604633 + L1PA15 LINE L1 5643 6163 -2 617 191 191 6 chr6 174811005 174811173 -7604069 - MER3 DNA MER1_type 0 209 11 228 348 0 0 chr6 174812411 174812480 -7602762 + MIR SINE MIR 110 178 -84 21 0 0 0 chr6 174812620 174812641 -7602601 + AT_rich Low_complexity Low_complexity 1 21 0 446 265 33 0 chr6 174812876 174813001 -7602241 + MIR SINE MIR 62 189 -65 180 283 35 80 chr6 174813475 174813588 -7601654 + L2 LINE L2 2201 2308 -1006 23 33 0 0 chr6 174813896 174813926 -7601316 + AT_rich Low_complexity Low_complexity 1 30 0 203 196 0 18 chr6 174814224 174814280 -7600962 + T-rich Low_complexity Low_complexity 1 55 0 536 232 0 0 chr6 174814438 174814537 -7600705 + AluJ/FLAM SINE Alu 1 99 -213 1601 169 5 58 chr6 174814594 174814972 -7600270 - L1 LINE L1 -1267 4879 4522 2405 80 3 0 chr6 174814991 174815292 -7599950 - AluY SINE Alu -9 302 1 1111 232 56 26 chr6 174815946 174816264 -7598978 + L1ME3 LINE L1 5831 6160 -2 515 284 191 15 chr6 174817998 174818202 -7597040 - MIR SINE MIR 0 262 23 892 35 9 0 chr6 174819811 174819926 -7595316 - L1P LINE L1 -966 5180 5065 420 0 0 0 chr6 174819926 174819973 -7595269 + L1PA2 LINE L1 6101 6151 -4 2943 181 3 76 chr6 174820054 174820682 -7594560 + MER77 LTR ERV1 1 582 -23 2382 70 33 0 chr6 174821774 174822074 -7593168 + AluY SINE Alu 1 310 -1 380 316 69 52 chr6 174823645 174823876 -7591366 + MIR SINE MIR 1 235 -27 1681 160 73 7 chr6 174824369 174824657 -7590585 - AluJb SINE Alu -5 307 1 291 227 108 39 chr6 174824685 174824888 -7590354 - L1MC5 LINE L1 -192 7769 7553 * 384 218 34 95 chr6 174824887 174825034 -7590208 + L1MC5 LINE L1 7763 7900 -61 319 267 43 101 chr6 174825994 174826320 -7588922 + MLT1J LTR MaLR 3 309 -202 512 234 79 62 chr6 174826354 174826581 -7588661 - L1ME LINE L1 -5770 300 70 3271 157 46 20 chr6 174827489 174828100 -7587142 + LTR48B LTR ERV1 3 629 -15 21 0 0 0 chr6 174829150 174829171 -7586071 + AT_rich Low_complexity Low_complexity 1 21 0 510 103 0 0 chr6 174829619 174829697 -7585545 + (CA)n Simple_repeat Simple_repeat 2 79 0 376 255 144 21 chr6 174831385 174831573 -7583669 - MIR SINE MIR -24 238 28 220 311 74 37 chr6 174831674 174831809 -7583433 - L2 LINE L2 -1 3271 3132 21 0 0 0 chr6 174832756 174832777 -7582465 + AT_rich Low_complexity Low_complexity 1 21 0 495 272 93 0 chr6 174834405 174834567 -7580675 + MIR SINE MIR 86 262 0 2027 129 7 16 chr6 174835385 174835688 -7579554 - AluSx SINE Alu -12 300 1 926 107 0 30 chr6 174835688 174835819 -7579423 - AluSq/x SINE Alu -178 135 9 25 65 0 0 chr6 174835864 174835910 -7579332 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr6 174836198 174836227 -7579015 + AT_rich Low_complexity Low_complexity 1 29 0 1485 196 74 95 chr6 174836577 174836618 -7578624 + LTR40c LTR ERVL 1 41 -424 3061 131 42 44 chr6 174836618 174837146 -7578096 + MER1A DNA MER1_type 1 527 0 1485 196 74 95 chr6 174837146 174837579 -7577663 + LTR40c LTR ERVL 41 465 0 1251 278 97 37 chr6 174837852 174838177 -7577065 + HERVL40 LTR ERVL 940 1244 -4286 408 20 0 0 chr6 174838177 174838226 -7577016 + (CA)n Simple_repeat Simple_repeat 2 50 0 1251 278 97 37 chr6 174838226 174838518 -7576724 + HERVL40 LTR ERVL 1244 1594 -3936 1008 262 41 4 chr6 174838664 174838931 -7576311 + HERVL40 LTR ERVL 2813 3089 -2441 925 246 41 16 chr6 174838982 174839226 -7576016 + HERVL40 LTR ERVL 3180 3429 -2101 2587 208 64 56 chr6 174839245 174839976 -7575266 + HERVL40 LTR ERVL 4772 5508 -22 466 204 19 19 chr6 174839985 174840093 -7575149 + LTR40c LTR ERVL 7 114 -351 * 1480 228 50 21 chr6 174840081 174840463 -7574779 + LTR40c LTR ERVL 59 451 -14 2464 58 0 0 chr6 174841038 174841330 -7573912 + AluY SINE Alu 14 305 -6 297 75 0 0 chr6 174844978 174845018 -7570224 + (CA)n Simple_repeat Simple_repeat 1 40 0 1352 185 142 66 chr6 174845177 174845504 -7569738 + MLT1D LTR MaLR 40 519 -105 1730 155 62 24 chr6 174845504 174845795 -7569447 + AluJo SINE Alu 1 302 -10 1352 185 142 66 chr6 174845795 174845910 -7569332 + MLT1D LTR MaLR 519 624 0 2418 64 0 7 chr6 174846639 174846935 -7568307 + AluY SINE Alu 1 294 -17 222 37 0 0 chr6 174847150 174847177 -7568065 + (CA)n Simple_repeat Simple_repeat 1 27 0 225 0 0 0 chr6 174848104 174848129 -7567113 + (A)n Simple_repeat Simple_repeat 1 25 0 2873 6 0 0 chr6 174848648 174848959 -7566283 - AluYb8 SINE Alu -7 311 1 215 330 105 60 chr6 174849745 174849945 -7565297 + L2 LINE L2 2954 3162 -110 332 242 33 11 chr6 174851344 174851435 -7563807 + L2 LINE L2 3194 3286 -27 231 247 185 12 chr6 174851521 174851602 -7563640 + L1MC/D LINE L1 5437 5531 -2277 253 258 39 62 chr6 174851617 174851745 -7563497 + MER91A DNA MER1_type 1 125 -71 283 262 145 58 chr6 174853004 174853176 -7562066 + LTR4 LTR ERV1 14 200 -396 675 256 14 28 chr6 174853392 174853607 -7561635 + LTR4 LTR ERV1 385 596 0 1919 142 0 10 chr6 174853893 174854203 -7561039 + AluJo SINE Alu 1 307 -5 211 154 19 39 chr6 174855699 174855751 -7559491 + G-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr6 174855926 174855947 -7559295 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 174856082 174856103 -7559139 + GC_rich Low_complexity Low_complexity 1 21 0 5114 223 18 47 chr6 174907302 174907844 -7507398 - L1 LINE L1 -2597 4968 4412 2186 125 0 3 chr6 174907844 174908156 -7507086 - AluSx SINE Alu -1 311 1 5114 223 18 47 chr6 174908156 174909334 -7505908 - L1 LINE L1 -3153 4412 3294 275 309 8 16 chr6 174909357 174909483 -7505759 - L1MDa LINE L1 -1277 5263 5139 21 89 0 0 chr6 174909495 174909551 -7505691 + AT_rich Low_complexity Low_complexity 1 56 0 305 245 10 69 chr6 174909610 174909712 -7505530 - L1MDa LINE L1 -2378 4162 4067 727 132 0 0 chr6 174909788 174909894 -7505348 + AluSq/x SINE Alu 1 106 -207 1724 113 4 0 chr6 174909894 174910125 -7505117 + AluSx SINE Alu 50 281 -31 207 0 0 0 chr6 174910128 174910151 -7505091 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 751 279 57 17 chr6 174910208 174910509 -7504733 + L1MC/D LINE L1 5263 5575 -2233 181 386 49 12 chr6 174910554 174910717 -7504525 + MIR3 SINE MIR 30 198 -10 549 297 110 5 chr6 174910998 174911207 -7504035 + MIR SINE MIR 2 232 -30 566 221 139 95 chr6 174912302 174912682 -7502560 - LTR16A1 LTR ERVL 0 457 61 186 328 90 23 chr6 174912755 174912932 -7502310 - L2 LINE L2 -312 3001 2813 725 291 78 46 chr6 174912983 174913416 -7501826 - L2 LINE L2 -373 2941 2495 296 279 150 7 chr6 174913917 174914057 -7501185 - MIR SINE MIR -32 230 71 2235 107 0 0 chr6 174914076 174914376 -7500866 + AluSc SINE Alu 1 300 -9 318 267 35 26 chr6 174914459 174914575 -7500667 + L2 LINE L2 3195 3311 -2 2043 118 0 0 chr6 174916413 174916701 -7498541 + AluY SINE Alu 1 288 -23 23 33 0 0 chr6 174917096 174917126 -7498116 + AT_rich Low_complexity Low_complexity 1 30 0 2266 84 0 7 chr6 174917167 174917463 -7497779 - AluSg SINE Alu -16 294 1 189 0 0 0 chr6 174917509 174917530 -7497712 + (CAT)n Simple_repeat Simple_repeat 2 22 0 185 210 16 0 chr6 174917534 174917596 -7497646 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1236 237 13 23 chr6 174917706 174918010 -7497232 + MER76 LTR ERV 287 587 -101 3458 166 32 34 chr6 174918350 174919092 -7496150 - L1MA7 LINE L1 0 6291 5551 250 202 153 8 chr6 174919095 174919219 -7496023 - L1MDa LINE L1 -2699 3841 3700 355 268 78 0 chr6 174919264 174919443 -7495799 - L1MDa LINE L1 -3119 3421 3229 648 272 116 53 chr6 174919668 174920981 -7494261 - L1MDa LINE L1 -3585 2955 1516 30 0 0 0 chr6 174921003 174921033 -7494209 + AT_rich Low_complexity Low_complexity 1 30 0 336 224 24 12 chr6 174921688 174921773 -7493469 + MLT1I LTR MaLR 316 401 -8 261 209 60 45 chr6 174921809 174921876 -7493366 - MIR SINE MIR -112 150 83 279 253 157 12 chr6 174924787 174924953 -7490289 + HAL1 LINE L1 844 1033 -1474 467 294 111 8 chr6 174925421 174925673 -7489569 - L2 LINE L2 -1370 1944 1667 2574 3 0 3 chr6 174925915 174926200 -7489042 - AluYb8 SINE Alu 0 318 35 1718 210 43 6 chr6 174927398 174927745 -7487497 + MLT1A1 LTR MaLR 5 364 -1 311 259 24 24 chr6 174928239 174928324 -7486918 - MIR3 SINE MIR -37 171 87 1255 233 153 8 chr6 174928355 174928741 -7486501 - MER69 DNA AcHobo 0 2526 2085 369 218 13 13 chr6 174929078 174929156 -7486086 - MER69 DNA AcHobo -2448 78 1 1415 73 59 0 chr6 174929304 174929508 -7485734 + L1PB1 LINE L1 5935 6150 -1 21 57 0 0 chr6 174929960 174929995 -7485247 + AT_rich Low_complexity Low_complexity 1 35 0 420 135 0 0 chr6 174930262 174930336 -7484906 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 257 321 18 18 chr6 174930349 174930458 -7484784 - L2 LINE L2 -11 3261 3153 211 290 32 32 chr6 174930821 174930883 -7484359 - L2 LINE L2 -1 3271 3210 2878 126 13 7 chr6 174931285 174931739 -7483503 - L1PA11 LINE L1 -1 6173 5717 6220 254 61 38 chr6 174932179 174934765 -7480477 + L1MEc LINE L1 40 2674 -3541 332 256 135 15 chr6 174935278 174935411 -7479831 - MIR SINE MIR -48 214 66 760 276 101 34 chr6 174936000 174936389 -7478853 - L1ME LINE L1 -341 5780 5363 206 77 51 0 chr6 174936940 174936979 -7478263 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 402 121 0 0 chr6 174937566 174937632 -7477610 + (GA)n Simple_repeat Simple_repeat 2 67 0 1904 139 11 72 chr6 174937920 174938280 -7476962 - MER1B DNA MER1_type 0 339 2 899 295 70 0 chr6 174938742 174939027 -7476215 + MLT1J2 LTR MaLR 3 307 -143 216 254 15 15 chr6 174939824 174939891 -7475351 + (TA)n Simple_repeat Simple_repeat 1 67 0 306 141 26 26 chr6 174939895 174939973 -7475269 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 290 143 16 0 chr6 174939995 174940058 -7475184 + LTR66 LTR ERVL 394 457 -153 554 118 0 43 chr6 174940309 174940402 -7474840 - L1MC2 LINE L1 -8 6336 6248 * 5108 154 34 4 chr6 174940392 174941390 -7473852 - L1MC1 LINE L1 -122 6211 5186 333 246 43 0 chr6 174941401 174941470 -7473772 - tRNA-Glu-GAG tRNA tRNA -3 72 1 200 204 56 37 chr6 174943783 174943837 -7471405 + L2 LINE L2 2439 2493 -821 323 333 106 8 chr6 174943905 174944037 -7471205 + L2 LINE L2 3169 3313 0 1161 292 325 16 chr6 174944237 174945426 -7469816 - L2 LINE L2 -1737 1577 22 319 287 12 98 chr6 174945528 174945782 -7469460 - L1ME LINE L1 -339 5831 5600 331 307 108 18 chr6 174945853 174946019 -7469223 - MLT1L LTR MaLR -132 483 303 1193 54 0 0 chr6 174946273 174946422 -7468820 + L1PA13 LINE L1 6007 6155 -8 782 280 83 15 chr6 174946450 174947141 -7468101 - L1ME LINE L1 -564 5600 4864 824 275 84 90 chr6 174947158 174947705 -7467537 - L2 LINE L2 0 3313 2770 286 225 63 45 chr6 174947754 174947865 -7467377 - L1P LINE L1 -1155 4991 4879 602 296 63 46 chr6 174948002 174948590 -7466652 - L1ME LINE L1 -1488 4658 4061 1924 121 34 3 chr6 174949414 174949711 -7465531 + AluSx SINE Alu 1 306 -6 301 314 107 19 chr6 174949732 174949891 -7465351 - HAL1b LINE L1 -796 552 380 22 70 0 0 chr6 174951629 174951672 -7463570 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr6 174952762 174952798 -7462444 + AT_rich Low_complexity Low_complexity 1 36 0 2036 108 35 0 chr6 174953542 174953828 -7461414 - AluSx SINE Alu -16 296 1 23 54 0 0 chr6 174954209 174954246 -7460996 + AT_rich Low_complexity Low_complexity 1 37 0 210 375 113 28 chr6 174955216 174955536 -7459706 + L2 LINE L2 1999 2345 -969 259 363 24 8 chr6 174955822 174955946 -7459296 - L2 LINE L2 -556 2758 2633 184 358 58 29 chr6 174956780 174956917 -7458325 + MIR SINE MIR 1 141 -121 1974 170 18 3 chr6 174957251 174957593 -7457649 - MER7A DNA MER2_type 0 346 2 14562 133 26 14 chr6 174957607 174958520 -7456722 - Tigger1 DNA MER2_type -7 2411 1511 2189 120 3 7 chr6 174958520 174958829 -7456413 - AluSq SINE Alu -5 308 1 14562 133 26 14 chr6 174958829 174960296 -7454946 - Tigger1 DNA MER2_type -907 1511 2 23 92 0 0 chr6 174961228 174961293 -7453949 + AT_rich Low_complexity Low_complexity 1 65 0 4781 230 67 36 chr6 174962270 174963642 -7451600 + L1MD1 LINE L1 516 1930 -4610 519 328 21 11 chr6 174963631 174963918 -7451324 + L1MD1 LINE L1 3605 3894 -2646 * 364 247 13 19 chr6 174963920 174964078 -7451164 + L1MD1 LINE L1 4255 4411 -2129 * 601 213 26 1 chr6 174964059 174964211 -7451031 + L1MD1 LINE L1 6073 6229 -327 370 185 0 0 chr6 174964212 174964277 -7450965 - MER46A DNA MER2_type -1 235 171 * 503 132 0 13 chr6 174964276 174964352 -7450890 - MER46A DNA MER2_type -133 103 29 1550 183 111 6 chr6 174964364 174964724 -7450518 + L1MD1 LINE L1 6228 6625 -11 22 80 0 0 chr6 174965586 174965636 -7449606 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr6 174968452 174968476 -7446766 + AT_rich Low_complexity Low_complexity 1 24 0 2529 62 0 0 chr6 174968764 174969071 -7446171 - AluY SINE Alu -4 307 1 1028 181 50 0 chr6 174969938 174970137 -7445105 + MER3 DNA MER1_type 1 209 0 22 0 0 0 chr6 174970434 174970456 -7444786 + AT_rich Low_complexity Low_complexity 1 22 0 310 246 55 82 chr6 174971994 174972104 -7443138 + L2 LINE L2 3200 3306 -7 263 295 13 13 chr6 174972157 174972235 -7443007 + MIR3 SINE MIR 115 192 -16 21 0 0 0 chr6 174972841 174972862 -7442380 + AT_rich Low_complexity Low_complexity 1 21 0 363 306 56 67 chr6 174975007 174975275 -7439967 - HAL1b LINE L1 -652 696 432 2450 74 0 7 chr6 174975922 174976232 -7439010 - AluY SINE Alu -3 308 1 252 0 0 0 chr6 174978353 174978381 -7436861 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 194 170 0 21 chr6 174978772 174978819 -7436423 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 2411 93 3 0 chr6 174978872 174979182 -7436060 - AluSp SINE Alu -2 311 1 27 0 0 0 chr6 174979537 174979564 -7435678 + AT_rich Low_complexity Low_complexity 1 27 0 240 276 47 83 chr6 174980128 174980320 -7434922 + L2 LINE L2 2902 3086 -186 809 304 55 0 chr6 174980854 174981127 -7434115 - L2 LINE L2 -2 3311 3024 27 0 0 0 chr6 174981336 174981363 -7433879 + AT_rich Low_complexity Low_complexity 1 27 0 635 226 0 0 chr6 174981974 174982098 -7433144 + Tigger3(Golem) DNA MER2_type 1 124 -2905 241 224 13 53 chr6 174982144 174982220 -7433022 - MER21A LTR ERV1 -676 255 183 199 269 240 34 chr6 174982753 174982928 -7432314 + L2 LINE L2 2844 3054 -218 310 275 14 0 chr6 174983735 174983804 -7431438 - L2 LINE L2 -5 3308 3239 6039 93 6 13 chr6 174983928 174984791 -7430451 - L1PA10 LINE L1 -16 6152 5296 21 0 0 0 chr6 174984877 174984898 -7430344 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 174985168 174985190 -7430052 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 174985369 174985399 -7429843 + AT_rich Low_complexity Low_complexity 1 30 0 1275 105 0 0 chr6 174985937 174986128 -7429114 - L1P4 LINE L1 -671 5497 5307 953 168 31 44 chr6 174986268 174986494 -7428748 - L1MB2 LINE L1 -7 6164 5942 289 335 62 28 chr6 174989193 174989372 -7425870 - MIR3 SINE MIR -3 205 21 977 269 136 23 chr6 174990592 174990982 -7424260 - MLT1J2 LTR MaLR -16 434 1 42961 32 21 1 chr6 174991012 174997040 -7418202 - L1PA2 LINE L1 -1 6154 3 424 263 28 22 chr6 174997158 174997337 -7417905 - L1MEc LINE L1 -6209 187 8 21 0 0 0 chr6 174997557 174997578 -7417664 + AT_rich Low_complexity Low_complexity 1 21 0 749 315 56 5 chr6 174998357 174998786 -7416456 - LTR16B LTR ERVL -13 451 1 198 246 14 14 chr6 174998867 174998936 -7416306 + L2 LINE L2 2440 2508 -806 195 279 88 44 chr6 175001199 175001267 -7413975 - L2 LINE L2 -34 3279 3209 3736 208 65 12 chr6 175002717 175003536 -7411706 + MER21B LTR ERV1 1 862 -1 1067 262 41 8 chr6 175003789 175004178 -7411064 - Charlie2 DNA MER1_type -3 2859 2458 605 164 20 14 chr6 175004320 175004466 -7410776 + GA-rich Low_complexity Low_complexity 2 148 0 1645 212 49 22 chr6 175004943 175005396 -7409846 - Charlie2 DNA MER1_type -542 2320 1856 842 257 75 29 chr6 175005402 175005709 -7409533 - Charlie2 DNA MER1_type -2461 321 1 736 116 0 0 chr6 175005978 175006180 -7409062 + L1PA14 LINE L1 5882 6148 -13 420 247 109 60 chr6 175006192 175006379 -7408863 + MIR SINE MIR 64 262 0 205 321 49 12 chr6 175006611 175006692 -7408550 + L2 LINE L2 3184 3267 -5 526 296 55 27 chr6 175007493 175007713 -7407529 + MIR SINE MIR 36 261 -1 1813 156 0 7 chr6 175008464 175008778 -7406464 - AluJo SINE Alu 0 312 1 186 182 0 0 chr6 175008853 175008886 -7406356 + MIR SINE MIR 76 108 -100 1930 141 66 33 chr6 175010534 175010897 -7404345 - THE1C LTR MaLR 0 375 1 1141 256 83 9 chr6 175010903 175011244 -7403998 - MER39 LTR ERV1 0 707 211 430 237 119 20 chr6 175011321 175011470 -7403772 - MER39 LTR ERV1 -397 145 3 453 217 50 28 chr6 175011886 175012069 -7403173 + MER39 LTR ERV1 1 282 -425 1479 167 22 38 chr6 175012107 175012425 -7402817 + MER39 LTR ERV1 395 707 0 316 253 25 13 chr6 175015670 175015749 -7399493 + MIR3 SINE MIR 103 182 -26 467 273 100 27 chr6 175016044 175016264 -7398978 - MIR SINE MIR -11 251 16 238 250 50 0 chr6 175016787 175016847 -7398395 - L2 LINE L2 0 3313 3251 307 329 14 34 chr6 175020262 175020408 -7394834 + MIR SINE MIR 10 152 -110 209 281 141 44 chr6 175020662 175020797 -7394445 + MIR SINE MIR 26 173 -89 305 250 12 12 chr6 175021585 175021669 -7393573 + MIR3 SINE MIR 125 208 0 1794 104 0 4 chr6 175022849 175023090 -7392152 - L1PB1 LINE L1 -2 6149 5910 256 338 109 29 chr6 175023352 175023562 -7391680 - L2 LINE L2 -45 3268 3042 2436 43 4 0 chr6 175024056 175024382 -7390860 + AluY SINE Alu 1 327 0 295 275 82 58 chr6 175024455 175024626 -7390616 - MIR SINE MIR -56 206 32 192 40 0 0 chr6 175025622 175025647 -7389595 + (TG)n Simple_repeat Simple_repeat 2 26 0 213 39 0 0 chr6 175026571 175026597 -7388645 + (TA)n Simple_repeat Simple_repeat 2 27 0 192 254 0 17 chr6 175027186 175027367 -7387875 + (CA)n Simple_repeat Simple_repeat 1 178 0 510 344 0 0 chr6 175027383 175027563 -7387679 + (CA)n Simple_repeat Simple_repeat 1 180 0 608 219 0 7 chr6 175027581 175027893 -7387349 + (CA)n Simple_repeat Simple_repeat 1 309 0 3301 67 10 0 chr6 175028852 175029328 -7385914 - L1PA7 LINE L1 -739 5433 4955 5867 54 19 0 chr6 175029328 175030015 -7385227 + L1PA7 LINE L1 5451 6152 -2 356 275 0 8 chr6 175030969 175031090 -7384152 + L1M2a LINE L1 1 119 -7090 415 268 9 18 chr6 175032065 175032177 -7383065 - L2 LINE L2 0 3313 3203 238 315 76 22 chr6 175035420 175035512 -7379730 + L2 LINE L2 3212 3308 -5 309 51 0 0 chr6 175036104 175036143 -7379099 + (TG)n Simple_repeat Simple_repeat 2 40 0 809 159 73 46 chr6 175036164 175036315 -7378927 - Tigger2 DNA MER2_type -10 2708 2554 * 1144 148 24 29 chr6 175036312 175036354 -7378888 - Tigger2 DNA MER2_type -2510 208 167 1632 155 40 43 chr6 175036354 175036658 -7378584 - AluJb SINE Alu -8 304 2 1144 148 24 29 chr6 175036658 175036824 -7378418 - Tigger2 DNA MER2_type -2551 167 1 426 202 65 9 chr6 175036867 175037009 -7378233 + L1MC4 LINE L1 7880 7995 0 2137 131 0 10 chr6 175037676 175037990 -7377252 - AluSx SINE Alu -1 311 1 801 151 89 0 chr6 175037990 175038136 -7377106 - MER82 DNA MER2_type -458 195 37 192 200 0 0 chr6 175038162 175038202 -7377040 + (TG)n Simple_repeat Simple_repeat 1 40 0 712 209 99 62 chr6 175038202 175038475 -7376767 - L1MC4 LINE L1 -124 7918 7636 1100 139 79 0 chr6 175038475 175038640 -7376602 - AluSg1 SINE Alu -129 180 3 26 0 0 0 chr6 175039247 175039273 -7375969 + AT_rich Low_complexity Low_complexity 1 26 0 1505 99 0 5 chr6 175039340 175039532 -7375710 - AluSx SINE Alu -25 285 95 683 151 0 19 chr6 175039565 175039671 -7375571 - AluSx SINE Alu -208 105 2 799 218 46 0 chr6 175040299 175040473 -7374769 - MLT1A1 LTR MaLR 0 365 184 2165 276 78 69 chr6 175043043 175045293 -7369949 + HERVL40 LTR ERVL 2329 4579 -951 283 356 44 19 chr6 175046192 175046352 -7368890 + MER89-int LTR ERV1 6175 6338 -463 1257 135 17 57 chr6 175047481 175047711 -7367531 + AluJb SINE Alu 84 304 -8 1462 258 158 22 chr6 175048486 175049258 -7365984 + MER69 DNA AcHobo 2 907 -402 2056 212 51 10 chr6 175049263 175049749 -7365493 + MER69 DNA AcHobo 1711 2216 -310 285 186 51 0 chr6 175049747 175049806 -7365436 + MER69 DNA AcHobo 2441 2502 -24 * 255 213 67 13 chr6 175050543 175050618 -7364624 + L2 LINE L2 3147 3225 -47 1216 212 20 0 chr6 175050938 175051183 -7364059 + MIR SINE MIR 12 261 -1 348 299 75 0 chr6 175052240 175052387 -7362855 - MIR SINE MIR -96 166 9 186 217 132 28 chr6 175052912 175053018 -7362224 + L2 LINE L2 1944 2060 -1254 654 317 149 20 chr6 175053033 175053475 -7361767 + L2 LINE L2 2815 3313 0 789 344 62 9 chr6 175053505 175053842 -7361400 + L3 LINE CR1 1206 1560 -17 368 336 104 18 chr6 175054147 175054367 -7360875 + MARNA DNA Mariner 281 519 -67 23 33 0 0 chr6 175055727 175055757 -7359485 + AT_rich Low_complexity Low_complexity 1 30 0 2418 117 39 25 chr6 175055780 175056139 -7359103 - THE1B LTR MaLR 0 364 1 2138 217 40 13 chr6 175056283 175056735 -7358507 - MLT2C2 LTR ERVL 0 464 1 303 320 0 0 chr6 175057886 175057961 -7357281 - MIR3 SINE MIR -24 184 110 355 257 53 0 chr6 175058238 175058351 -7356891 + MER94 DNA DNA 16 134 0 24 32 0 0 chr6 175060111 175060142 -7355100 + AT_rich Low_complexity Low_complexity 1 31 0 485 305 86 57 chr6 175060761 175061306 -7353936 - MLT1K LTR MaLR -8 580 20 2557 56 0 0 chr6 175061693 175061996 -7353246 + AluY SINE Alu 1 303 -8 327 345 35 53 chr6 175062118 175062289 -7352953 + L2 LINE L2 3104 3271 -1 629 251 25 25 chr6 175062388 175062551 -7352691 + MIR SINE MIR 2 164 -98 434 294 57 28 chr6 175062546 175062723 -7352519 - MIR SINE MIR -53 209 28 * 661 305 183 25 chr6 175064142 175064542 -7350700 - LTR33 LTR ERVL -55 466 4 341 320 48 66 chr6 175064546 175064818 -7350424 - L1ME3A LINE L1 -312 5858 5592 271 269 82 0 chr6 175064828 175064937 -7350305 - L1ME3A LINE L1 -613 5551 5431 2190 123 0 0 chr6 175064989 175065289 -7349953 - AluSg SINE Alu -10 300 1 3458 223 88 51 chr6 175065538 175067692 -7347550 - L1ME1 LINE L1 -11 6433 4174 523 163 51 0 chr6 175067707 175067805 -7347437 - MER58 DNA MER1_type 0 2420 2318 229 326 11 43 chr6 175067817 175067909 -7347333 - MER58 DNA MER1_type -2321 99 11 2171 253 64 24 chr6 175067920 175068979 -7346263 - L1ME1 LINE L1 -3981 2445 1191 185 307 78 78 chr6 175069539 175069692 -7345550 + MIR SINE MIR 69 221 -41 24 77 0 0 chr6 175071307 175071359 -7343883 + AT_rich Low_complexity Low_complexity 1 52 0 32 57 0 0 chr6 175072290 175072343 -7342899 + AT_rich Low_complexity Low_complexity 1 53 0 252 213 0 0 chr6 175072589 175072650 -7342592 + GA-rich Low_complexity Low_complexity 2 62 0 183 326 35 12 chr6 175072651 175072737 -7342505 + MIR SINE MIR 64 151 -111 424 287 44 15 chr6 175073906 175074042 -7341200 - MER5B DNA MER1_type -6 172 33 431 184 0 0 chr6 175074072 175074159 -7341083 - L1MA5 LINE L1 -1 6299 6213 1537 179 227 19 chr6 175074302 175074787 -7340455 - LTR60 LTR ERV1 0 586 1 9970 165 38 26 chr6 175074788 175077142 -7338100 - L1MA5 LINE L1 -80 6220 3895 14791 120 25 0 chr6 175077142 175080220 -7335022 + L1PA10 LINE L1 3047 6158 -10 225 65 0 0 chr6 175080226 175080257 -7334985 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9970 165 38 26 chr6 175080257 175080850 -7334392 - L1MA5 LINE L1 -2409 3891 3232 8736 168 34 16 chr6 175080893 175083556 -7331686 - L1MA4 LINE L1 -3 6999 4291 1979 189 39 21 chr6 175083555 175084041 -7331201 - L1ME1 LINE L1 -803 5343 4849 * 2912 234 48 16 chr6 175084041 175084833 -7330409 + L1ME1 LINE L1 5345 6161 -5 5755 186 46 27 chr6 175084853 175086127 -7329115 - L1MA4 LINE L1 -2542 4306 3058 1911 190 37 48 chr6 175086127 175086403 -7328839 - MSTB1 LTR MaLR 0 432 161 2227 101 10 0 chr6 175086403 175086709 -7328533 + AluSx SINE Alu 3 311 -1 1911 190 37 48 chr6 175086709 175086869 -7328373 - MSTB1 LTR MaLR -271 161 1 5755 186 46 27 chr6 175086869 175088185 -7327057 - L1MA4 LINE L1 -3790 3058 1664 2099 150 33 28 chr6 175088366 175088727 -7326515 - THE1B LTR MaLR 0 364 2 32 26 0 0 chr6 175089056 175089095 -7326147 + AT_rich Low_complexity Low_complexity 1 39 0 528 182 98 7 chr6 175089585 175089728 -7325514 - MER3 DNA MER1_type 0 2624 2469 280 278 69 0 chr6 175089726 175089798 -7325444 - MER3 DNA MER1_type -92 117 41 * 4421 95 0 3 chr6 175090321 175090942 -7324300 - L1PB1 LINE L1 0 6151 5533 2681 115 0 3 chr6 175090942 175091446 -7323796 - L1P5 LINE L1 -519 5632 5131 1660 234 24 0 chr6 175091441 175091852 -7323390 + L1 LINE L1 4750 5170 -976 * 306 320 0 25 chr6 175091946 175092068 -7323174 + CT-rich Low_complexity Low_complexity 1 119 0 234 0 0 0 chr6 175092096 175092122 -7323120 + (TG)n Simple_repeat Simple_repeat 2 27 0 330 390 7 0 chr6 175092496 175092650 -7322592 - MIR3 SINE MIR 0 208 54 213 39 0 0 chr6 175092800 175092826 -7322416 + (TC)n Simple_repeat Simple_repeat 1 26 0 207 259 36 9 chr6 175092833 175092945 -7322297 + CT-rich Low_complexity Low_complexity 2 116 0 480 122 0 0 chr6 175093416 175093498 -7321744 + (TG)n Simple_repeat Simple_repeat 1 82 0 544 96 48 19 chr6 175094086 175094190 -7321052 + L1MA7 LINE L1 6185 6291 0 346 289 53 33 chr6 175094692 175094996 -7320246 - L1MEd LINE L1 -4914 1205 896 12526 177 30 8 chr6 175095209 175097421 -7317821 + L1MA4A LINE L1 2 2261 -4588 12529 158 37 101 chr6 175097452 175102051 -7313191 + L1MA4A LINE L1 2703 7004 -1 22 56 0 0 chr6 175102463 175102499 -7312743 + AT_rich Low_complexity Low_complexity 1 36 0 2287 62 0 38 chr6 175102635 175102956 -7312286 + AluY SINE Alu 1 310 0 26 0 0 0 chr6 175103360 175103386 -7311856 + AT_rich Low_complexity Low_complexity 1 26 0 2772 171 13 62 chr6 175103521 175104117 -7311125 - MER101B LTR ERV1 -2 568 2 28 0 0 0 chr6 175155566 175155594 -7259648 + AT_rich Low_complexity Low_complexity 1 28 0 271 267 175 8 chr6 175156406 175156526 -7258716 + MIR SINE MIR 5 144 -118 279 321 75 0 chr6 175156651 175156757 -7258485 - L2 LINE L2 -22 3291 3178 189 302 0 0 chr6 175158452 175158505 -7256737 + L2 LINE L2 3261 3313 0 395 266 151 66 chr6 175158858 175159223 -7256019 + Charlie8 DNA MER1_type 121 516 -1901 370 366 82 4 chr6 175159628 175159860 -7255382 - MIR SINE MIR 0 262 13 243 184 48 19 chr6 175160081 175160184 -7255058 + (TA)n Simple_repeat Simple_repeat 2 107 0 2300 103 16 49 chr6 175160196 175160584 -7254658 - THE1C LTR MaLR 0 375 1 256 350 159 6 chr6 175160862 175161020 -7254222 + MIR SINE MIR 5 193 -63 1664 237 74 9 chr6 175161020 175161694 -7253548 - L1MEc LINE L1 -2677 3538 2821 411 228 66 0 chr6 175161794 175161961 -7253281 + (TA)n Simple_repeat Simple_repeat 1 178 0 316 119 62 45 chr6 175162060 175162236 -7253006 + (TA)n Simple_repeat Simple_repeat 2 180 0 595 77 33 0 chr6 175162242 175162333 -7252909 - L1MA3 LINE L1 -17 6288 6195 2285 215 61 33 chr6 175162337 175163544 -7251698 - L1MEc LINE L1 -3379 2836 1622 640 279 43 8 chr6 175163556 175163810 -7251432 - L1MEc LINE L1 -6090 306 44 301 354 14 28 chr6 175164923 175165067 -7250175 + MIR3 SINE MIR 58 199 -9 293 316 88 15 chr6 175166741 175166877 -7248365 - L2 LINE L2 0 3313 3168 4513 137 53 6 chr6 175167212 175168037 -7247205 - Tigger3(Golem) DNA MER2_type 0 3029 2166 274 342 38 70 chr6 175168750 175168908 -7246334 + L2 LINE L2 3114 3266 -6 1014 166 91 42 chr6 175168936 175169245 -7245997 + MER33 DNA MER1_type 1 318 -6 279 0 0 0 chr6 175169292 175169323 -7245919 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4859 180 20 4 chr6 175170118 175171864 -7243378 - L1PA16 LINE L1 -244 5922 4154 26 30 0 0 chr6 175172842 175172875 -7242367 + AT_rich Low_complexity Low_complexity 1 33 0 192 97 0 0 chr6 175173700 175173731 -7241511 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 400 284 129 40 chr6 175174411 175174759 -7240483 - HAL1b LINE L1 -710 638 260 317 304 0 62 chr6 175178204 175178316 -7236926 - L2 LINE L2 -9 3263 3159 5518 133 30 7 chr6 175179113 175180803 -7234439 - L1PA16 LINE L1 -11 6155 4435 3315 206 1 14 chr6 175180803 175181565 -7233677 + L1PA16 LINE L1 3689 4440 -1706 602 192 0 8 chr6 175182010 175182140 -7233102 + L1 LINE L1 4634 4762 -1384 295 280 144 8 chr6 175182687 175182805 -7232437 + L2 LINE L2 3139 3272 0 305 259 48 78 chr6 175184032 175184198 -7231044 - MLT1J1 LTR MaLR -283 167 7 21 57 0 0 chr6 175184622 175184657 -7230585 + AT_rich Low_complexity Low_complexity 1 35 0 1825 199 37 45 chr6 175184904 175185396 -7229846 + MLT1D LTR MaLR 8 495 -10 253 258 306 0 chr6 175186411 175186535 -7228707 - MER63A DNA MER1_type -26 184 23 3613 78 2 0 chr6 175186535 175187022 -7228220 - MER41A LTR ERV1 0 554 67 11850 104 30 14 chr6 175187022 175190111 -7225131 - MER41A-int LTR ERV1 -75 5871 1082 3762 128 16 25 chr6 175190101 175190732 -7224510 - MER41A-int LTR ERV1 -5321 625 1 * 4180 71 3 21 chr6 175190794 175191259 -7223983 - MER41A LTR ERV1 0 554 99 2162 116 19 16 chr6 175191259 175191395 -7223847 + AluSx SINE Alu 1 135 -177 2215 119 3 0 chr6 175191395 175191697 -7223545 + AluSg SINE Alu 1 303 -7 2162 116 19 16 chr6 175191697 175191870 -7223372 + AluSx SINE Alu 135 311 -1 4180 71 3 21 chr6 175191870 175191968 -7223274 - MER41A LTR ERV1 -455 99 1 771 59 0 0 chr6 175192850 175192951 -7222291 + (TCCA)n Simple_repeat Simple_repeat 1 101 0 580 252 133 33 chr6 175194027 175194237 -7221005 - MIR SINE MIR -21 241 11 233 381 52 21 chr6 175194354 175194643 -7220599 - L2 LINE L2 -430 2884 2587 1728 144 58 73 chr6 175195014 175195395 -7219847 + THE1C LTR MaLR 1 375 0 10020 129 6 35 chr6 175195397 175197022 -7218220 + THE1C-int LTR MaLR 3 1580 0 1775 170 40 45 chr6 175197022 175197084 -7218158 + THE1C LTR MaLR 1 62 -313 2543 66 0 0 chr6 175197084 175197387 -7217855 + AluY SINE Alu 1 303 -8 1775 170 40 45 chr6 175197387 175197701 -7217541 + THE1C LTR MaLR 62 375 0 2220 89 7 0 chr6 175197883 175198192 -7217050 - AluSp SINE Alu 0 311 1 1919 138 14 3 chr6 175199301 175199591 -7215651 + AluSx SINE Alu 1 293 -19 1866 155 10 3 chr6 175200199 175200495 -7214747 - AluJb SINE Alu -14 298 1 1547 92 5 0 chr6 175201455 175201651 -7213591 - AluY SINE Alu -114 197 1 2327 62 24 3 chr6 175201651 175201942 -7213300 - AluSc SINE Alu -11 298 1 250 297 102 34 chr6 175202481 175202599 -7212643 - MIR SINE MIR -71 191 66 317 303 81 39 chr6 175203874 175204342 -7210900 - L1MEc LINE L1 -1644 4485 3998 417 286 196 34 chr6 175204343 175204665 -7210577 - L1MEc LINE L1 -2182 3947 3574 245 337 9 36 chr6 175204703 175205032 -7210210 - L1MEc LINE L1 -3192 2937 2618 466 295 133 45 chr6 175205056 175205432 -7209810 + L1MC/D LINE L1 4643 5051 -1095 787 273 81 21 chr6 175205596 175205981 -7209261 + L1MC/D LINE L1 5254 5661 -2147 402 343 45 30 chr6 175206636 175206901 -7208341 - L1MEc LINE L1 -4737 1573 1305 616 285 69 13 chr6 175206903 175207208 -7208034 - L1MEc LINE L1 -4894 1225 904 384 285 63 63 chr6 175207315 175207536 -7207706 - L1MEc LINE L1 -5367 752 532 258 295 81 47 chr6 175207544 175207693 -7207549 - L1MEc LINE L1 -5650 469 316 22 0 0 0 chr6 175208147 175208169 -7207073 + AT_rich Low_complexity Low_complexity 1 22 0 901 116 36 10 chr6 175208488 175208769 -7206473 + THE1C LTR MaLR 1 375 0 191 283 0 67 chr6 175209925 175209985 -7205257 - L2 LINE L2 -8 3305 3250 1085 225 39 52 chr6 175210149 175210536 -7204706 + MLT1B LTR MaLR 6 396 0 1459 143 30 103 chr6 175210565 175210935 -7204307 - MER61A LTR ERV1 0 343 1 508 306 83 26 chr6 175211059 175211252 -7203990 - L2 LINE L2 -1392 1922 1719 435 235 0 0 chr6 175211330 175211449 -7203793 + (CA)n Simple_repeat Simple_repeat 2 120 0 1410 167 50 25 chr6 175211716 175212039 -7203203 - L1MB5 LINE L1 -14 6160 5830 1942 183 63 0 chr6 175212039 175212437 -7202805 + L1MB5 LINE L1 5391 5813 -361 1153 239 51 16 chr6 175212437 175212837 -7202405 - LTR47A LTR ERVL 0 452 3 1826 201 39 80 chr6 175212840 175213438 -7201804 - MER4B-int LTR ERV1 -683 6075 5503 1320 162 9 0 chr6 175213449 175213659 -7201583 - AluJo SINE Alu -17 295 84 2962 144 33 42 chr6 175213659 175214372 -7200870 - MER4B-int LTR ERV1 -900 5463 4835 277 254 16 0 chr6 175214372 175214435 -7200807 - LTR47A LTR ERVL -118 334 271 1798 123 49 39 chr6 175214519 175214643 -7200599 + AluSp SINE Alu 1 122 -191 2281 56 0 14 chr6 175214643 175214957 -7200285 + AluY SINE Alu 1 310 0 1798 123 49 39 chr6 175214957 175215139 -7200103 + AluSp SINE Alu 122 311 -2 806 255 43 0 chr6 175215657 175215841 -7199401 + MIR SINE MIR 37 228 -34 203 238 0 0 chr6 175215850 175215892 -7199350 + (TTG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr6 175216516 175216537 -7198705 + AT_rich Low_complexity Low_complexity 1 21 0 236 219 42 10 chr6 175216949 175217045 -7198197 + (TA)n Simple_repeat Simple_repeat 1 99 0 314 334 56 95 chr6 175221600 175222229 -7193013 + HAL1 LINE L1 861 1464 -1043 227 273 266 0 chr6 175223178 175223306 -7191936 - MER5A DNA MER1_type -6 183 22 657 280 158 48 chr6 175223829 175224902 -7190340 - HAL1 LINE L1 -370 2137 947 13458 147 49 13 chr6 175225081 175230737 -7184505 + L1MA3 LINE L1 1850 7722 -2 893 152 13 25 chr6 175230868 175231026 -7184216 + FRAM SINE Alu 1 151 -25 1349 275 42 24 chr6 175231048 175231786 -7183456 + L1M4 LINE L1 3259 4009 -2137 538 256 142 71 chr6 175231786 175232110 -7183132 - MLT1I LTR MaLR -2 407 61 394 256 92 101 chr6 175232112 175232459 -7182783 - L1ME LINE L1 -5453 617 274 276 359 118 13 chr6 175232582 175232889 -7182353 + L2 LINE L2 2778 3113 -159 254 365 88 0 chr6 175234109 175234246 -7180996 + MIR SINE MIR 3 151 -111 2193 88 32 7 chr6 175234247 175234532 -7180710 + AluSq SINE Alu 1 292 -21 190 311 33 0 chr6 175234550 175234611 -7180631 + MIR SINE MIR 145 207 -55 318 106 0 0 chr6 175234622 175234669 -7180573 + (CAT)n Simple_repeat Simple_repeat 2 48 0 262 317 193 14 chr6 175235042 175235187 -7180055 + MIR SINE MIR 55 225 -37 696 347 71 46 chr6 175235245 175235749 -7179493 - L3 LINE CR1 -860 717 201 2468 68 0 3 chr6 175235916 175236226 -7179016 - AluY SINE Alu -2 309 1 833 166 70 62 chr6 175237304 175237507 -7177735 + L1MB4 LINE L1 5920 6127 -53 1774 178 3 3 chr6 175237507 175237794 -7177448 + AluJo SINE Alu 6 292 -20 833 166 70 62 chr6 175237794 175237849 -7177393 + L1MB4 LINE L1 6127 6180 0 872 316 100 32 chr6 175237868 175238529 -7176713 + L1M4 LINE L1 4067 4772 -1374 606 271 87 22 chr6 175238689 175239055 -7176187 - L1ME4a LINE L1 -187 5934 5545 525 91 91 0 chr6 175239174 175239262 -7175980 + MER4A LTR ERV1 1 96 -568 1578 124 11 80 chr6 175239263 175239634 -7175608 + MER4A LTR ERV1 261 664 0 351 299 69 29 chr6 175239658 175239862 -7175380 - L1ME4a LINE L1 -772 5374 5163 243 96 58 0 chr6 175240862 175240914 -7174328 + (TA)n Simple_repeat Simple_repeat 2 56 0 307 338 7 52 chr6 175241841 175241995 -7173247 + L2 LINE L2 3162 3308 -5 285 287 33 47 chr6 175241920 175242070 -7173172 + MIR SINE MIR 110 257 -5 * 238 266 6 58 chr6 175243220 175243393 -7171849 + GA-rich Low_complexity Low_complexity 3 166 0 249 333 0 44 chr6 175243418 175243601 -7171641 + GA-rich Low_complexity Low_complexity 4 178 0 * 301 235 0 82 chr6 175243549 175243732 -7171510 + G-rich Low_complexity Low_complexity 5 172 0 * 365 249 6 45 chr6 175243648 175243825 -7171417 + GA-rich Low_complexity Low_complexity 5 174 0 225 249 21 18 chr6 175244473 175244559 -7170683 - MIR SINE MIR -76 132 45 260 284 23 0 chr6 175246903 175246991 -7168251 - MIR SINE MIR -52 210 121 180 333 83 31 chr6 175250613 175250709 -7164533 + L2 LINE L2 3163 3263 -9 345 338 98 19 chr6 175250762 175251028 -7164214 - L3 LINE CR1 -135 1442 1156 1528 213 55 42 chr6 175251463 175251919 -7163323 - MLT1C LTR MaLR 0 467 6 3701 155 69 29 chr6 175253482 175254231 -7161011 - MER4E LTR ERV1 0 779 1 4174 90 0 0 chr6 175254629 175255183 -7160059 - MER41A LTR ERV1 0 554 1 180 39 0 39 chr6 175257968 175257994 -7157248 - MIR SINE MIR -18 244 220 203 0 37 0 chr6 175258894 175258921 -7156321 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 450 200 50 17 chr6 175258937 175259057 -7156185 + L2 LINE L2 3190 3313 0 1642 220 139 7 chr6 175259067 175259498 -7155744 - MLT1E2 LTR MaLR 0 626 139 509 207 163 15 chr6 175259579 175259714 -7155528 - MLT1E2 LTR MaLR -457 167 13 334 230 71 33 chr6 175259855 175259978 -7155264 - MIR SINE MIR -63 145 30 757 172 86 32 chr6 175260414 175260600 -7154642 - MSTB2 LTR MaLR 0 457 262 25 0 0 0 chr6 175261931 175261956 -7153286 + AT_rich Low_complexity Low_complexity 1 25 0 536 271 37 11 chr6 175262030 175262218 -7153024 - MIR SINE MIR 0 262 70 246 218 18 0 chr6 175263096 175263151 -7152091 + GA-rich Low_complexity Low_complexity 1 56 0 329 294 85 28 chr6 175263479 175263656 -7151586 - L3 LINE CR1 -84 1493 1307 1959 128 116 104 chr6 175264093 175264421 -7150821 + MSTA LTR MaLR 1 337 -91 1713 142 51 17 chr6 175264421 175264717 -7150525 - AluSx SINE Alu -6 306 1 1959 128 116 104 chr6 175264717 175264809 -7150433 + MSTA LTR MaLR 337 426 -2 215 300 7 114 chr6 175266325 175266465 -7148777 - L2 LINE L2 0 3272 3148 182 370 80 0 chr6 175266862 175266962 -7148280 + MIR SINE MIR 42 149 -59 8930 175 51 28 chr6 175268094 175270023 -7145219 + L1M4c LINE L1 2 2077 -4307 1898 144 0 4 chr6 175270023 175270301 -7144941 + AluSx SINE Alu 28 304 -8 8930 175 51 28 chr6 175270301 175270488 -7144754 + L1M4c LINE L1 2077 2258 -4126 3259 131 27 6 chr6 175270528 175271046 -7144196 + L1MA9 LINE L1 5782 6310 -2 2285 161 88 13 chr6 175272085 175272483 -7142759 - MSTA LTR MaLR 0 428 1 2233 110 3 0 chr6 175273498 175273797 -7141445 + AluSq SINE Alu 1 300 -13 186 387 0 0 chr6 175274040 175274102 -7141140 + MIR SINE MIR 32 93 -115 575 327 24 5 chr6 175275230 175275435 -7139807 + MIR SINE MIR 31 239 -23 213 119 167 0 chr6 175276605 175276647 -7138595 - L2 LINE L2 0 3313 3265 2413 81 10 0 chr6 175277692 175277990 -7137252 - AluY SINE Alu -10 301 1 3845 178 40 20 chr6 175278350 175278372 -7136870 - L1MA10 LINE L1 -10 6324 6304 2135 190 53 2 chr6 175278372 175278783 -7136459 + MSTB1 LTR MaLR 1 432 0 3845 178 40 20 chr6 175278783 175278952 -7136290 - L1MA10 LINE L1 -30 6304 6140 2929 177 80 10 chr6 175278952 175279551 -7135691 - LTR9B LTR ERV1 0 644 4 3845 178 40 20 chr6 175279551 175280106 -7135136 - L1MA10 LINE L1 -194 6140 5562 1002 193 10 11 chr6 175280106 175280315 -7134927 - L1M LINE L1 -788 5358 5161 198 0 0 0 chr6 175280562 175280584 -7134658 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 441 362 36 38 chr6 175281080 175281607 -7133635 + L1ME LINE L1 4795 5320 -826 315 350 45 6 chr6 175281686 175281863 -7133379 + L1ME LINE L1 5479 5662 -459 21 36 0 0 chr6 175282728 175282756 -7132486 + AT_rich Low_complexity Low_complexity 1 28 0 238 223 43 64 chr6 175283459 175283553 -7131689 + L2 LINE L2 3185 3276 -37 191 325 57 82 chr6 175285099 175285293 -7129949 + MER5A DNA MER1_type 1 189 0 437 265 92 5 chr6 175285713 175285926 -7129316 + MIR SINE MIR 51 243 -19 250 288 103 69 chr6 175286583 175286816 -7128426 + L2 LINE L2 2723 2963 -351 1332 223 54 98 chr6 175286888 175287054 -7128188 + MLT1C LTR MaLR 6 178 -289 2573 41 0 16 chr6 175287054 175287369 -7127873 + AluY SINE Alu 1 310 -1 1332 223 54 98 chr6 175287369 175287683 -7127559 + MLT1C LTR MaLR 178 465 -2 181 339 0 0 chr6 175287868 175287924 -7127318 + L2 LINE L2 3251 3306 -7 320 191 36 119 chr6 175289010 175289178 -7126064 - MLT1I LTR MaLR 0 409 293 745 260 23 0 chr6 175289219 175289392 -7125850 - MLT1J2 LTR MaLR -269 181 5 3837 179 59 17 chr6 175289678 175290440 -7124802 - MER45B DNA AcHobo 0 1040 247 252 252 36 27 chr6 175290795 175290906 -7124336 - L1MC4 LINE L1 -4 8038 7927 2248 110 0 7 chr6 175291214 175291515 -7123727 - AluSg SINE Alu -11 299 1 598 313 115 16 chr6 175291516 175292191 -7123051 - L1ME3A LINE L1 -341 5829 5090 446 323 26 11 chr6 175292353 175292622 -7122620 - L1ME3A LINE L1 -1447 4699 4427 265 234 279 0 chr6 175293692 175293803 -7121439 - MIR SINE MIR 0 262 121 2234 148 9 0 chr6 175294441 175294772 -7120470 - MER1B DNA MER1_type -2 337 4 1212 225 156 14 chr6 175295041 175295459 -7119783 - MLT1D LTR MaLR -2 503 27 348 304 104 7 chr6 175295475 175295610 -7119632 + MIR SINE MIR 81 228 -34 443 124 0 101 chr6 175295711 175295800 -7119442 - MADE1 DNA Mariner 0 80 1 188 67 33 0 chr6 175296472 175296502 -7118740 + (TAAAAA)n Simple_repeat Simple_repeat 1 31 0 364 282 50 29 chr6 175297043 175297340 -7117902 + L1M2 LINE L1 1567 2152 -4275 261 251 149 21 chr6 175297626 175297861 -7117381 + L1M2 LINE L1 2546 2810 -3616 28 0 0 0 chr6 175298043 175298071 -7117171 + AT_rich Low_complexity Low_complexity 1 28 0 372 274 91 15 chr6 175298179 175298376 -7116866 + L1M2 LINE L1 3351 3562 -2864 393 296 99 9 chr6 175298389 175298622 -7116620 + L1M2 LINE L1 3645 3898 -2528 2037 194 32 19 chr6 175298799 175299262 -7115980 + L1MD3 LINE L1 7527 7995 0 328 306 28 0 chr6 175299531 175299639 -7115603 - Charlie4 DNA MER1_type -3 1958 1848 2182 122 20 0 chr6 175299981 175300285 -7114957 + AluSx SINE Alu 1 310 -2 342 67 0 0 chr6 175300354 175300399 -7114843 + (CA)n Simple_repeat Simple_repeat 2 46 0 2391 95 0 0 chr6 175300515 175300811 -7114431 + AluSx SINE Alu 1 296 -16 516 297 31 26 chr6 175301144 175301336 -7113906 + MIR SINE MIR 20 212 -50 488 185 171 27 chr6 175301550 175301696 -7113546 + MER20 DNA MER1_type 1 167 -52 228 341 12 0 chr6 175303398 175303480 -7111762 - MIR SINE MIR -69 193 111 180 0 0 0 chr6 175304990 175305010 -7110232 + (G)n Simple_repeat Simple_repeat 1 20 0 316 286 92 0 chr6 175306175 175306294 -7108948 + MIR SINE MIR 66 195 -67 200 319 197 11 chr6 175306432 175306620 -7108622 + L2 LINE L2 2827 3049 -223 23 33 0 0 chr6 175306856 175306886 -7108356 + AT_rich Low_complexity Low_complexity 1 30 0 190 259 116 36 chr6 175308506 175308618 -7106624 - L3b LINE CR1 -221 1362 1242 850 156 32 27 chr6 175310640 175310826 -7104416 + MER53 DNA DNA 1 187 -2 242 292 135 28 chr6 175311348 175311526 -7103716 - L2 LINE L2 -192 3080 2884 359 247 128 32 chr6 175311861 175312080 -7103162 + L2 LINE L2 2855 3094 -178 316 299 150 19 chr6 175312185 175312392 -7102850 + L2 LINE L2 2174 2407 -907 1666 210 60 58 chr6 175312612 175313116 -7102126 - MLT1D LTR MaLR 0 505 1 249 242 65 0 chr6 175313504 175313566 -7101676 + L2 LINE L2 3201 3266 -47 286 294 22 0 chr6 175315058 175315150 -7100092 + MIR SINE MIR 22 115 -147 74 57 0 0 chr6 175315290 175315413 -7099829 + AT_rich Low_complexity Low_complexity 1 123 0 215 263 152 0 chr6 175316993 175317092 -7098150 - MIR SINE MIR -130 132 19 297 294 53 40 chr6 175317438 175317666 -7097576 - L1MC/D LINE L1 -1952 5856 5626 313 257 14 0 chr6 175318355 175318429 -7096813 + MER5B DNA MER1_type 4 78 -100 247 188 159 0 chr6 175318693 175318762 -7096480 - MER5B DNA MER1_type -98 80 1 2238 122 0 0 chr6 175319289 175319600 -7095642 - AluSx SINE Alu -1 311 1 28 29 0 0 chr6 175319917 175319952 -7095290 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 175320051 175320072 -7095170 + AT_rich Low_complexity Low_complexity 1 21 0 231 294 55 37 chr6 175320771 175320880 -7094362 + MIR SINE MIR 14 124 -84 1840 129 22 75 chr6 175324223 175324541 -7090701 + AluSx SINE Alu 1 301 -11 1542 166 66 51 chr6 175325834 175326184 -7089058 - MLT1B LTR MaLR -34 356 2 548 240 26 62 chr6 175327359 175327551 -7087691 - MIR SINE MIR 0 262 78 195 222 0 0 chr6 175328506 175328551 -7086691 + (CA)n Simple_repeat Simple_repeat 2 46 0 714 298 124 9 chr6 175328826 175329252 -7085990 + L1ME4a LINE L1 5618 6092 -29 1516 89 79 5 chr6 175330154 175330368 -7084874 + MER30 DNA MER1_type 1 230 0 347 325 40 0 chr6 175330669 175330795 -7084447 - L3b LINE CR1 -175 1408 1278 335 304 48 18 chr6 175330866 175331034 -7084208 - MIR SINE MIR -49 213 41 342 0 0 0 chr6 175331773 175331811 -7083431 + (GGA)n Simple_repeat Simple_repeat 3 40 0 185 284 15 30 chr6 175332504 175332571 -7082671 - L2 LINE L2 -2 3311 3246 243 0 0 0 chr6 175333739 175333766 -7081476 + (T)n Simple_repeat Simple_repeat 1 27 0 781 261 78 71 chr6 175334284 175334709 -7080533 + MLT1J LTR MaLR 77 504 -7 26 0 0 0 chr6 175335415 175335441 -7079801 + AT_rich Low_complexity Low_complexity 1 26 0 1681 156 7 33 chr6 175335453 175335754 -7079488 + AluJb SINE Alu 8 300 -12 1072 153 12 0 chr6 175336510 175336673 -7078569 + FRAM SINE Alu 2 166 -10 295 383 0 0 chr6 175336932 175337052 -7078190 - MIR SINE MIR -110 152 33 243 0 0 0 chr6 175337633 175337660 -7077582 + (A)n Simple_repeat Simple_repeat 1 27 0 284 277 84 17 chr6 175338712 175338831 -7076411 - MIR SINE MIR -51 211 85 381 133 0 0 chr6 175342401 175342476 -7072766 + (CA)n Simple_repeat Simple_repeat 2 76 0 220 316 21 21 chr6 175347496 175347591 -7067651 + MIR3 SINE MIR 90 184 -24 21 0 0 0 chr6 175349130 175349151 -7066091 + AT_rich Low_complexity Low_complexity 1 21 0 35 24 0 0 chr6 175349664 175349706 -7065536 + AT_rich Low_complexity Low_complexity 1 42 0 1929 103 0 0 chr6 175349909 175350161 -7065081 - AluSx SINE Alu 0 312 61 192 250 0 0 chr6 175350374 175350438 -7064804 + CT-rich Low_complexity Low_complexity 2 65 0 247 214 14 29 chr6 175350870 175350940 -7064302 + CT-rich Low_complexity Low_complexity 4 72 0 266 236 137 43 chr6 175352449 175352610 -7062632 + MIR SINE MIR 77 252 -10 186 71 0 0 chr6 175352797 175352825 -7062417 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 846 149 0 17 chr6 175352825 175353000 -7062242 + (TAGA)n Simple_repeat Simple_repeat 1 172 0 2470 64 0 19 chr6 175353460 175353774 -7061468 - AluY SINE Alu 0 311 4 545 261 85 15 chr6 175354436 175354635 -7060607 - MIR SINE MIR -30 232 20 1671 147 14 75 chr6 175354727 175355094 -7060148 - MER4A LTR ERV1 -1 663 261 664 101 0 10 chr6 175355094 175355193 -7060049 - MER4A LTR ERV1 -566 98 1 530 302 4 43 chr6 175355411 175355643 -7059599 - MIR SINE MIR -32 230 8 220 303 25 8 chr6 175355849 175355968 -7059274 + (TA)n Simple_repeat Simple_repeat 1 121 0 21 0 0 0 chr6 175356221 175356242 -7059000 + AT_rich Low_complexity Low_complexity 1 21 0 365 226 0 0 chr6 175356791 175356853 -7058389 + MER81 DNA DNA 1 62 -52 325 248 0 22 chr6 175358375 175358512 -7056730 + (TATG)n Simple_repeat Simple_repeat 3 136 0 2115 98 3 41 chr6 175359147 175359466 -7055776 + AluSx SINE Alu 1 308 0 6785 173 50 6 chr6 175360746 175362725 -7052517 + L1PA15 LINE L1 4124 6165 0 215 29 88 0 chr6 175364295 175364329 -7050913 + T-rich Low_complexity Low_complexity 4 40 0 225 309 82 10 chr6 175366570 175366667 -7048575 + MIR SINE MIR 105 208 -54 2309 247 198 61 chr6 175368133 175368812 -7046430 + L1MC4a LINE L1 6442 7027 -781 2387 78 3 0 chr6 175368812 175369106 -7046136 - AluY SINE Alu -16 295 1 2309 247 198 61 chr6 175369106 175369545 -7045697 + L1MC4a LINE L1 7027 7713 -95 468 257 29 36 chr6 175369587 175369780 -7045462 - L1M LINE L1 -743 5403 5225 1032 154 55 40 chr6 175370122 175370323 -7044919 + MER3 DNA MER1_type 2 205 -4 28 48 0 0 chr6 175370584 175370626 -7044616 + AT_rich Low_complexity Low_complexity 1 42 0 250 312 111 44 chr6 175370760 175371218 -7044024 - L1M4 LINE L1 -1948 4198 3710 410 339 197 17 chr6 175371529 175372066 -7043176 - L2 LINE L2 -923 2391 1758 25 0 0 0 chr6 175372809 175372834 -7042408 + AT_rich Low_complexity Low_complexity 1 25 0 3386 146 13 17 chr6 175373559 175374087 -7041155 + MER1A DNA MER1_type 2 527 0 813 299 179 28 chr6 175374127 175374833 -7040409 + L2 LINE L2 1365 2176 -1138 675 203 59 0 chr6 175374848 175375001 -7040241 + MER20 DNA MER1_type 1 162 -57 1039 320 75 38 chr6 175375057 175375735 -7039507 + L2 LINE L2 2191 2893 -421 639 306 83 37 chr6 175375731 175376188 -7039054 + L2 LINE L2 2817 3294 -19 * 466 323 6 6 chr6 175376805 175376972 -7038270 - MIR SINE MIR 0 262 96 1739 116 8 0 chr6 175378365 175378607 -7036635 + AluSx SINE Alu 40 283 -29 2327 113 0 0 chr6 175379140 175379450 -7035792 + AluSq SINE Alu 1 310 -3 4651 122 14 15 chr6 175379989 175380115 -7035127 + L1MA7 LINE L1 4585 4710 -1581 2185 142 0 0 chr6 175380115 175380426 -7034816 + AluSx SINE Alu 1 311 -1 4651 122 14 15 chr6 175380426 175380806 -7034436 + L1MA7 LINE L1 4710 5089 -1202 183 42 0 0 chr6 175380806 175380830 -7034412 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4651 122 14 15 chr6 175380830 175381228 -7034014 + L1MA7 LINE L1 5089 5492 -799 2322 117 61 17 chr6 175381228 175381587 -7033655 + THE1C LTR MaLR 1 375 0 4651 122 14 15 chr6 175381587 175381924 -7033318 + L1MA7 LINE L1 5492 5828 -463 916 144 0 0 chr6 175381925 175382057 -7033185 + FLAM_C SINE Alu 1 132 -11 2654 159 21 15 chr6 175382058 175382523 -7032719 + L1MA7 LINE L1 5815 6282 -9 296 266 103 31 chr6 175382609 175382777 -7032465 - LTR16A LTR ERVL -214 236 59 415 176 14 0 chr6 175382938 175383012 -7032230 + U13 snRNA snRNA 1 75 -29 1998 176 85 10 chr6 175383102 175383500 -7031742 - MSTA LTR MaLR 0 428 1 243 0 0 0 chr6 175384408 175384435 -7030807 + (A)n Simple_repeat Simple_repeat 1 27 0 189 255 78 0 chr6 175384448 175384499 -7030743 + L2 LINE L2 3255 3309 -4 1480 157 51 41 chr6 175385106 175385399 -7029843 + AluJo SINE Alu 1 296 -16 229 324 114 33 chr6 175386803 175387013 -7028229 - L2 LINE L2 -159 3113 2887 329 331 14 7 chr6 175388460 175388602 -7026640 + GA-rich Low_complexity Low_complexity 4 146 0 559 327 92 71 chr6 175389611 175390193 -7025049 - L2 LINE L2 -652 2662 2094 2373 149 37 53 chr6 175390193 175390629 -7024613 + MSTB1 LTR MaLR 4 432 0 559 327 92 71 chr6 175390629 175391208 -7024034 - L2 LINE L2 -1220 2094 1477 2482 118 128 8 chr6 175392752 175393134 -7022108 - MSTA LTR MaLR 0 428 1 256 317 109 10 chr6 175394987 175395088 -7020154 + L2 LINE L2 3157 3267 -5 205 329 85 0 chr6 175395099 175395215 -7020027 + MIR SINE MIR 55 180 -62 537 228 5 0 chr6 175395708 175396129 -7019113 + (CA)n Simple_repeat Simple_repeat 1 423 0 1550 305 97 31 chr6 175401593 175402678 -7012564 + L2 LINE L2 2141 3298 -15 1964 88 4 11 chr6 175404801 175405073 -7010169 + AluY SINE Alu 41 310 -1 730 188 0 0 chr6 175406505 175406643 -7008599 - L1 LINE L1 -1853 4293 4156 * 3221 105 17 129 chr6 175406635 175406912 -7008330 + L1PB1 LINE L1 5586 5754 -397 216 0 0 0 chr6 175406912 175406936 -7008306 + (TA)n Simple_repeat Simple_repeat 1 24 0 3221 105 17 129 chr6 175406936 175407294 -7007948 + L1PB1 LINE L1 5754 6150 -1 35 0 0 0 chr6 175407294 175407329 -7007913 + AT_rich Low_complexity Low_complexity 1 35 0 332 245 140 0 chr6 175407855 175407968 -7007274 + MIR SINE MIR 32 162 -94 195 238 0 0 chr6 175408349 175408391 -7006851 - L2 LINE L2 -76 3237 3196 2198 115 6 10 chr6 175409043 175409356 -7005886 + AluSx SINE Alu 1 312 0 386 328 0 8 chr6 175409528 175409656 -7005586 - MIR3 SINE MIR -18 190 64 2138 128 3 28 chr6 175411644 175411964 -7003278 - AluSx SINE Alu 0 312 1 743 260 176 21 chr6 175412304 175412804 -7002438 - L2 LINE L2 -3 3310 2749 1472 227 40 46 chr6 175412808 175413262 -7001980 - MLT1C LTR MaLR -10 457 7 336 279 67 28 chr6 175413279 175413458 -7001784 - L2 LINE L2 -570 2744 2559 22 0 0 0 chr6 175413960 175413982 -7001260 + AT_rich Low_complexity Low_complexity 1 22 0 2488 58 7 0 chr6 175414505 175414799 -7000443 + AluY SINE Alu 2 297 -14 322 313 39 22 chr6 175415059 175415238 -7000004 - MIR SINE MIR -79 183 2 1509 49 0 0 chr6 175417273 175417457 -6997785 - L1PA8 LINE L1 0 6172 5989 1753 182 33 0 chr6 175417654 175417984 -6997258 - MER2 DNA MER2_type -2 342 2 1770 142 3 34 chr6 175418788 175419084 -6996158 + AluJo SINE Alu 1 287 -25 224 241 0 0 chr6 175421133 175421187 -6994055 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 303 235 49 39 chr6 175421508 175421610 -6993632 + MIR SINE MIR 136 238 -24 475 302 23 6 chr6 175422644 175422816 -6992426 - MIR SINE MIR -11 251 77 190 214 0 0 chr6 175423337 175423379 -6991863 - L2 LINE L2 -2 3311 3270 2373 77 7 7 chr6 175424147 175424447 -6990795 + AluY SINE Alu 1 300 -11 225 128 0 0 chr6 175425775 175425822 -6989420 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 * 1338 38 0 22 chr6 175425811 175425851 -6989391 + (GAAA)n Simple_repeat Simple_repeat 1 219 0 1338 38 0 22 chr6 175425851 175426035 -6989207 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 24 32 0 0 chr6 175426191 175426222 -6989020 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr6 175426298 175426320 -6988922 + AT_rich Low_complexity Low_complexity 1 22 0 1724 166 10 23 chr6 175426399 175426701 -6988541 - AluJo SINE Alu -14 298 1 297 243 0 14 chr6 175426834 175426904 -6988338 - L1MC/D LINE L1 -2271 5537 5469 2343 127 65 32 chr6 175426909 175427426 -6987816 - MLT2A2 LTR ERVL 0 554 1 322 283 62 43 chr6 175427748 175428006 -6987236 - L1MC/D LINE L1 -1440 4706 4444 2385 104 0 0 chr6 175428056 175428365 -6986877 - AluSg SINE Alu -1 309 1 572 288 113 56 chr6 175428665 175428918 -6986324 - L1MC/D LINE L1 -2100 4046 3809 2806 7 0 7 chr6 175428918 175429221 -6986021 - AluYa5 SINE Alu -10 301 1 572 288 113 56 chr6 175429221 175429392 -6985850 - L1MC/D LINE L1 -2337 3809 3649 180 77 0 0 chr6 175429392 175429418 -6985824 + (TTG)n Simple_repeat Simple_repeat 2 27 0 572 288 113 56 chr6 175429418 175430038 -6985204 - L1MC/D LINE L1 -2497 3649 2942 5818 45 0 1 chr6 175430060 175430754 -6984488 - L1PA5 LINE L1 -1 6153 5461 2093 136 0 43 chr6 175430878 175431202 -6984040 - AluSx SINE Alu -2 310 1 256 280 61 32 chr6 175431231 175431785 -6983457 - HAL1b LINE L1 -442 906 304 228 67 0 0 chr6 175432014 175432044 -6983198 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 2089 154 0 3 chr6 175432044 175432356 -6982886 - AluJb SINE Alu -1 311 1 386 263 47 89 chr6 175432537 175432601 -6982641 - HAL1b LINE L1 -1038 310 245 1810 196 25 3 chr6 175432601 175432954 -6982288 + MLT1A1 LTR MaLR 1 361 -4 386 263 47 89 chr6 175432954 175433125 -6982117 - HAL1b LINE L1 -1103 245 85 2817 76 5 0 chr6 175433138 175433506 -6981736 - L1PB1 LINE L1 0 6151 5782 293 282 0 0 chr6 175433506 175433591 -6981651 - L1MC4 LINE L1 -1342 6700 6616 497 197 0 8 chr6 175433601 175433728 -6981514 + (TA)n Simple_repeat Simple_repeat 1 126 0 5787 172 5 3 chr6 175433728 175435410 -6979832 - L1P5 LINE L1 -360 5791 4107 1317 215 42 72 chr6 175436557 175436943 -6978299 - MLT1A2 LTR MaLR 0 374 1 2354 104 0 3 chr6 175438457 175438766 -6976476 + AluSq SINE Alu 1 308 -5 2890 7 0 3 chr6 175439547 175439856 -6975386 + AluYb8 SINE Alu 1 308 -10 2118 137 3 0 chr6 175439860 175440153 -6975089 + AluSq SINE Alu 1 294 -19 25 51 0 0 chr6 175440565 175440604 -6974638 + AT_rich Low_complexity Low_complexity 1 39 0 201 328 145 21 chr6 175440723 175441561 -6973681 + L2 LINE L2 2287 3232 -40 393 142 0 74 chr6 175442813 175442961 -6972281 + (TATATG)n Simple_repeat Simple_repeat 1 137 0 245 151 38 0 chr6 175442987 175443040 -6972202 + L1MC4 LINE L1 6649 6703 -1339 219 69 0 0 chr6 175443043 175443072 -6972170 + (TG)n Simple_repeat Simple_repeat 2 30 0 30 27 0 0 chr6 175445496 175445533 -6969709 + AT_rich Low_complexity Low_complexity 1 37 0 2241 98 3 40 chr6 175445863 175446188 -6969054 - AluSp SINE Alu 0 313 1 414 0 0 0 chr6 175446307 175446353 -6968889 + (CA)n Simple_repeat Simple_repeat 1 46 0 374 268 50 28 chr6 175446569 175446748 -6968494 + MIR SINE MIR 62 244 -18 2008 116 53 0 chr6 175448430 175448595 -6966647 - AluSx SINE Alu -12 300 112 269 26 26 0 chr6 175448595 175448633 -6966609 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2008 116 53 0 chr6 175448633 175448752 -6966490 - AluSx SINE Alu -200 112 1 26 50 0 0 chr6 175450188 175450228 -6965014 + AT_rich Low_complexity Low_complexity 1 40 0 457 196 7 118 chr6 175450976 175451129 -6964113 + MIR SINE MIR 102 237 -25 380 167 28 0 chr6 175451138 175451210 -6964032 - MER116 DNA Mariner 0 80 7 191 313 75 0 chr6 175451862 175451929 -6963313 + MIR SINE MIR 158 229 -33 2262 81 0 27 chr6 175452327 175452624 -6962618 - AluSg1 SINE Alu -20 289 1 546 342 41 43 chr6 175454235 175454750 -6960492 + L1ME LINE L1 5310 5823 -298 271 298 92 60 chr6 175454825 175455107 -6960135 + L2 LINE L2 2916 3206 -107 2313 89 10 0 chr6 175455628 175455931 -6959311 + AluSx SINE Alu 1 306 -6 207 88 0 0 chr6 175458264 175458298 -6956944 + (T)n Simple_repeat Simple_repeat 1 34 0 1782 152 28 0 chr6 175459078 175459368 -6955874 + AluJb SINE Alu 1 298 -14 2215 112 0 22 chr6 175459755 175460067 -6955175 + AluSx SINE Alu 1 305 -7 411 322 34 0 chr6 175462063 175462209 -6953033 + MIR SINE MIR 56 206 -56 307 248 46 30 chr6 175462878 175463003 -6952239 - MIR SINE MIR -2 206 72 2295 129 0 0 chr6 175464412 175464714 -6950528 + AluSx SINE Alu 1 302 -10 1955 161 3 10 chr6 175468773 175469083 -6946159 - AluJo SINE Alu -3 309 2 231 88 0 0 chr6 175469084 175469118 -6946124 + (TC)n Simple_repeat Simple_repeat 1 34 0 213 39 0 0 chr6 175469129 175469155 -6946087 + (TA)n Simple_repeat Simple_repeat 1 26 0 2233 103 34 0 chr6 175472276 175472568 -6942674 + AluSq SINE Alu 1 302 -11 2410 90 3 0 chr6 175472802 175473101 -6942141 - AluSp SINE Alu -13 300 1 392 285 0 76 chr6 175473405 175473446 -6941796 + MIR SINE MIR 15 58 -204 2317 106 0 10 chr6 175473446 175473757 -6941485 + AluSx SINE Alu 1 308 -4 392 285 0 76 chr6 175473757 175473859 -6941383 + MIR SINE MIR 58 147 -115 394 311 33 28 chr6 175474661 175474841 -6940401 + MIR SINE MIR 1 181 -81 2091 126 3 14 chr6 175475223 175475508 -6939734 + AluSq SINE Alu 1 287 -26 525 32 0 0 chr6 175475508 175475571 -6939671 + (TA)n Simple_repeat Simple_repeat 1 63 0 180 0 0 0 chr6 175475570 175475590 -6939652 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 2091 126 3 14 chr6 175475571 175475598 -6939644 + AluSq SINE Alu 287 291 -22 504 313 183 18 chr6 175477534 175478205 -6937037 + L2 LINE L2 2058 2839 -475 453 276 130 56 chr6 175478304 175478626 -6936616 + L2 LINE L2 2956 3301 -12 2135 108 0 0 chr6 175478626 175478903 -6936339 + AluSx SINE Alu 1 277 -35 755 228 26 26 chr6 175479674 175479863 -6935379 + MER5A DNA MER1_type 1 189 0 25 0 0 0 chr6 175480200 175480225 -6935017 + AT_rich Low_complexity Low_complexity 1 25 0 196 227 45 0 chr6 175481631 175481675 -6933567 + MIR SINE MIR 104 149 -59 1912 122 73 0 chr6 175481800 175482088 -6933154 + AluSx SINE Alu 1 309 -3 303 205 0 9 chr6 175482947 175483011 -6932231 + MSTB LTR MaLR 1 61 -367 318 194 0 9 chr6 175483011 175483075 -6932167 + MSTB LTR MaLR 1 61 -367 303 196 0 0 chr6 175483075 175483131 -6932111 + MSTB LTR MaLR 1 56 -370 2230 158 73 0 chr6 175483139 175483537 -6931705 + MSTA LTR MaLR 1 427 -1 3511 123 68 35 chr6 175483882 175484475 -6930767 - LTR9 LTR ERV1 0 612 1 278 349 62 7 chr6 175484694 175484840 -6930402 + L3 LINE CR1 1417 1570 -7 1990 148 0 10 chr6 175484886 175485184 -6930058 + AluSx SINE Alu 3 297 -15 539 258 13 31 chr6 175485821 175485980 -6929262 + MIR3 SINE MIR 31 186 -22 2529 161 9 2 chr6 175486727 175487162 -6928080 - L1PA15 LINE L1 -5 6160 5723 1731 169 29 4 chr6 175487963 175488241 -6927001 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr6 175488996 175489018 -6926224 + AT_rich Low_complexity Low_complexity 1 22 0 351 256 23 8 chr6 175489025 175489154 -6926088 + L1ME2 LINE L1 5348 5478 -686 1031 239 126 67 chr6 175489214 175489391 -6925851 + L1ME2 LINE L1 5616 5781 -383 1951 161 3 0 chr6 175489391 175489683 -6925559 + AluSq SINE Alu 5 297 -16 1031 239 126 67 chr6 175489683 175490012 -6925230 + L1ME2 LINE L1 5781 6152 -12 302 233 19 48 chr6 175490357 175490460 -6924782 - L3 LINE CR1 -11 1566 1467 1810 217 42 13 chr6 175490958 175491410 -6923832 + MLT1C LTR MaLR 1 465 -2 1770 170 3 10 chr6 175493359 175493648 -6921594 - AluJb SINE Alu -25 287 1 321 281 10 0 chr6 175493837 175493933 -6921309 - MER117 DNA MER1_type -45 152 56 269 311 37 15 chr6 175494609 175494744 -6920498 - MLT1L LTR MaLR -331 284 147 504 360 91 45 chr6 175496007 175496602 -6918640 - L1ME4a LINE L1 -237 5884 5263 236 254 63 0 chr6 175496709 175496772 -6918470 - MIR SINE MIR -79 183 117 1139 256 123 5 chr6 175498481 175498888 -6916354 - MLT1C LTR MaLR -7 460 6 2304 105 7 0 chr6 175500114 175500410 -6914832 + AluSx SINE Alu 1 298 -14 343 301 81 0 chr6 175500996 175501119 -6914123 - LTR16B LTR ERVL -142 322 190 2060 124 7 3 chr6 175501512 175501819 -6913423 + AluSx SINE Alu 1 308 0 535 220 40 27 chr6 175503955 175504105 -6911137 - MER103 DNA DNA -7 159 8 2198 185 86 15 chr6 175504133 175504597 -6910645 + MLT1D LTR MaLR 1 497 -8 1921 207 36 39 chr6 175505796 175506264 -6908978 - MLT1C LTR MaLR 0 467 1 1801 161 37 0 chr6 175506338 175506634 -6908608 + AluJb SINE Alu 1 306 0 428 293 141 15 chr6 175506639 175506909 -6908333 + MLT1J LTR MaLR 151 454 -57 1097 165 38 9 chr6 175506910 175507122 -6908120 + MER20 DNA MER1_type 1 218 -1 271 239 109 54 chr6 175507627 175507719 -6907523 + L2 LINE L2 3203 3299 -14 21 0 0 0 chr6 175507964 175507985 -6907257 + AT_rich Low_complexity Low_complexity 1 21 0 1666 142 76 0 chr6 175508063 175508338 -6906904 + AluJb SINE Alu 1 296 -16 389 299 87 19 chr6 175508790 175508997 -6906245 - MIR SINE MIR -1 261 41 288 130 0 0 chr6 175509717 175509763 -6905479 + (T)n Simple_repeat Simple_repeat 1 46 0 1854 113 0 0 chr6 175509765 175510012 -6905230 - AluSx SINE Alu -65 247 1 498 136 0 0 chr6 175511488 175511569 -6903673 + (TTC)n Simple_repeat Simple_repeat 2 82 0 186 264 0 38 chr6 175512425 175512478 -6902764 - MIR SINE MIR -113 149 99 205 258 0 32 chr6 175512633 175512695 -6902547 + (CCCCG)n Simple_repeat Simple_repeat 5 64 0 492 197 0 16 chr6 175512757 175512940 -6902302 + (CA)n Simple_repeat Simple_repeat 1 180 0 467 224 7 7 chr6 175512953 175513257 -6901985 + (CA)n Simple_repeat Simple_repeat 1 304 0 537 179 0 0 chr6 175513537 175513872 -6901370 + AluSx SINE Alu 2 336 0 2149 99 0 0 chr6 175513988 175514280 -6900962 - AluSx SINE Alu -20 292 1 200 371 83 8 chr6 175515826 175515958 -6899284 + L3 LINE CR1 514 655 -922 321 26 0 0 chr6 175515972 175516010 -6899232 + (TA)n Simple_repeat Simple_repeat 2 39 0 1830 162 3 0 chr6 175516023 175516326 -6898916 - AluJo SINE Alu -8 304 1 4136 224 53 23 chr6 175516384 175517520 -6897722 - L1MC3 LINE L1 -254 7531 6362 343 320 138 24 chr6 175517586 175517883 -6897359 + L3 LINE CR1 736 1066 -511 1981 138 0 25 chr6 175517926 175518245 -6896997 + AluSx SINE Alu 1 311 -1 190 305 74 11 chr6 175518760 175518855 -6896387 + L3 LINE CR1 1312 1412 -165 27 29 0 0 chr6 175519548 175519582 -6895660 + AT_rich Low_complexity Low_complexity 1 34 0 1746 128 3 77 chr6 175519584 175519921 -6895321 + AluSq SINE Alu 1 312 -1 1608 162 0 20 chr6 175519983 175520285 -6894957 - AluJo SINE Alu -13 299 4 521 363 6 0 chr6 175520286 175520443 -6894799 + MIR3 SINE MIR 40 197 -11 312 282 120 8 chr6 175521871 175521988 -6893254 - MIR SINE MIR -98 164 35 1256 162 0 18 chr6 175522222 175522450 -6892792 - L1MA5A LINE L1 -5 6292 6069 274 327 28 9 chr6 175523150 175523257 -6891985 + MIR SINE MIR 39 147 -115 192 40 0 0 chr6 175523358 175523383 -6891859 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 207 231 27 82 chr6 175526192 175526339 -6888903 + CT-rich Low_complexity Low_complexity 4 142 0 258 32 0 0 chr6 175526971 175527002 -6888240 + (TCC)n Simple_repeat Simple_repeat 3 33 0 2019 132 0 0 chr6 175527793 175528096 -6887146 + AluSc SINE Alu 1 303 -6 301 222 74 12 chr6 175528193 175528274 -6886968 + MIR SINE MIR 110 195 -67 2359 93 0 0 chr6 175528424 175528736 -6886506 - AluSq SINE Alu -1 312 1 469 324 21 62 chr6 175528893 175529183 -6886059 - L2 LINE L2 0 3272 2995 741 215 84 11 chr6 175529236 175529427 -6885815 + MER20 DNA MER1_type 15 219 0 225 311 48 0 chr6 175530712 175530815 -6884427 + MIR3 SINE MIR 98 205 -3 835 133 0 0 chr6 175531053 175531181 -6884061 + AluSc SINE Alu 173 300 -9 2373 100 0 0 chr6 175531766 175532076 -6883166 - AluSx SINE Alu -2 310 1 315 343 112 0 chr6 175532575 175532744 -6882498 - MIR SINE MIR -65 197 10 596 300 64 0 chr6 175532745 175532965 -6882277 + Charlie1 DNA MER1_type 1 234 -2527 541 211 86 0 chr6 175532953 175533081 -6882161 + Charlie1 DNA MER1_type 2620 2758 -3 * 1703 105 4 4 chr6 175534035 175534292 -6880950 - AluSq SINE Alu -2 311 55 1144 226 86 66 chr6 175534335 175534720 -6880522 + MLT1C LTR MaLR 9 407 -60 1378 191 10 28 chr6 175534720 175535028 -6880214 + AluJb SINE Alu 1 303 0 1144 226 86 66 chr6 175535028 175535083 -6880159 + MLT1C LTR MaLR 407 459 -8 441 0 0 0 chr6 175535414 175535463 -6879779 + (TTA)n Simple_repeat Simple_repeat 2 50 0 1883 112 7 36 chr6 175536525 175536660 -6878582 + AluSx SINE Alu 1 138 -174 2106 109 13 0 chr6 175536660 175536963 -6878279 + AluSq SINE Alu 1 307 -6 1883 112 7 36 chr6 175536963 175537132 -6878110 + AluSx SINE Alu 138 296 -16 27 62 0 0 chr6 175537198 175537246 -6877996 + AT_rich Low_complexity Low_complexity 1 48 0 377 230 128 74 chr6 175538236 175538284 -6876958 - MIR SINE MIR -61 201 157 2065 108 10 0 chr6 175538284 175538581 -6876661 - AluSp SINE Alu -13 300 1 377 230 128 74 chr6 175538581 175538680 -6876562 - MIR SINE MIR -105 157 46 549 231 35 82 chr6 175538785 175538947 -6876295 + MER106B DNA MER1_type 25 193 -866 1806 140 3 35 chr6 175538947 175539261 -6875981 + AluJb SINE Alu 1 304 -8 549 231 35 82 chr6 175539261 175539316 -6875926 + MER106B DNA MER1_type 193 1059 0 2191 121 36 36 chr6 175539447 175539811 -6875431 + THE1B LTR MaLR 1 364 0 697 239 56 10 chr6 175540262 175540459 -6874783 - MER3 DNA MER1_type -3 206 1 190 364 61 0 chr6 175540519 175540618 -6874624 - L2 LINE L2 -5 3308 3204 601 248 54 7 chr6 175540741 175540890 -6874352 + MIR SINE MIR 92 247 -15 531 257 88 7 chr6 175541139 175541287 -6873955 - MIR3 SINE MIR -6 202 43 1706 163 3 3 chr6 175541465 175541747 -6873495 + AluJb SINE Alu 1 282 -30 2240 76 7 0 chr6 175541747 175542048 -6873194 + AluSp SINE Alu 1 303 -10 2125 117 0 0 chr6 175543118 175543417 -6871825 - AluSg SINE Alu -11 299 1 324 275 75 75 chr6 175545812 175546052 -6869190 + MLT1K LTR MaLR 308 547 -41 1557 120 35 19 chr6 175546053 175546333 -6868909 + AluSx SINE Alu 35 312 0 2266 100 3 0 chr6 175546372 175546683 -6868559 + AluSp SINE Alu 1 312 -1 302 285 66 31 chr6 175546882 175547051 -6868191 - MIR SINE MIR -56 206 39 209 189 0 0 chr6 175547072 175547109 -6868133 + (CA)n Simple_repeat Simple_repeat 2 38 0 2046 102 0 0 chr6 175547138 175547441 -6867801 + AluSg SINE Alu 1 303 0 189 0 0 0 chr6 175548500 175548521 -6866721 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 466 298 56 6 chr6 175549727 175549905 -6865337 - L1ME LINE L1 -452 5669 5483 1873 160 3 0 chr6 175550198 175550505 -6864737 + AluJb SINE Alu 5 312 0 188 139 0 23 chr6 175550600 175550643 -6864599 + (TA)n Simple_repeat Simple_repeat 2 43 0 471 100 0 0 chr6 175552769 175552839 -6862403 + (TG)n Simple_repeat Simple_repeat 1 70 0 833 168 49 0 chr6 175553337 175553522 -6861720 - L1MB4 LINE L1 -3 6177 5984 350 289 122 0 chr6 175554537 175554693 -6860549 - MLT1K LTR MaLR -35 553 379 481 231 163 0 chr6 175555234 175555394 -6859848 - MLT1J1 LTR MaLR -257 189 4 1899 125 7 0 chr6 175555438 175555737 -6859505 + AluSx SINE Alu 1 301 0 606 251 75 11 chr6 175555770 175555957 -6859285 - MIR SINE MIR -10 252 54 252 260 29 48 chr6 175555971 175556075 -6859167 + MIR SINE MIR 161 262 0 212 276 68 129 chr6 175556293 175556633 -6858609 + L2 LINE L2 2937 3255 -17 258 355 56 0 chr6 175556707 175556814 -6858428 - MIR SINE MIR 0 262 150 1547 90 7 35 chr6 175556814 175557232 -6858010 - MER4C LTR ERV1 0 465 1 251 247 14 14 chr6 175557232 175557305 -6857937 - MIR SINE MIR -109 153 81 420 111 0 0 chr6 175558836 175558899 -6856343 + (TG)n Simple_repeat Simple_repeat 2 64 0 1950 130 3 3 chr6 175559140 175559433 -6855809 - AluSx SINE Alu -19 293 1 346 280 261 8 chr6 175561325 175561520 -6853722 - MIR SINE MIR -13 249 12 2060 127 0 3 chr6 175563218 175563518 -6851724 - AluSx SINE Alu -13 299 1 188 24 98 0 chr6 175564412 175564453 -6850789 + (TA)n Simple_repeat Simple_repeat 2 46 0 245 286 0 0 chr6 175564631 175564687 -6850555 - MIR3 SINE MIR -6 202 147 273 233 158 30 chr6 175564902 175565035 -6850207 + MIR SINE MIR 28 177 -85 21 0 0 0 chr6 175565941 175565962 -6849280 + GC_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr6 175566445 175566492 -6848750 + AT_rich Low_complexity Low_complexity 1 47 0 1657 187 35 0 chr6 175567011 175567294 -6847948 - AluJb SINE Alu -19 293 1 269 372 28 0 chr6 175567300 175567445 -6847797 + MIR SINE MIR 98 246 -16 520 281 105 64 chr6 175567455 175568022 -6847220 - L2 LINE L2 -13 3300 2696 2329 71 7 3 chr6 175568028 175568322 -6846920 + AluSp SINE Alu 2 296 -17 337 174 87 0 chr6 175568420 175568489 -6846753 - MER116 DNA Mariner -3 77 3 595 271 82 24 chr6 175568536 175568743 -6846499 + MIR SINE MIR 31 249 -13 21 71 0 0 chr6 175569690 175569732 -6845510 + GC_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr6 175569893 175569924 -6845318 + GC_rich Low_complexity Low_complexity 1 31 0 22 103 0 0 chr6 175570129 175570207 -6845035 + GC_rich Low_complexity Low_complexity 1 78 0 22 70 0 0 chr6 175572736 175572779 -6842463 + AT_rich Low_complexity Low_complexity 1 43 0 30 0 0 0 chr6 175572857 175572887 -6842355 + AT_rich Low_complexity Low_complexity 1 30 0 202 111 0 67 chr6 175573067 175573112 -6842130 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 309 159 0 0 chr6 175574751 175574814 -6840428 + T-rich Low_complexity Low_complexity 1 63 0 2173 81 0 81 chr6 175576346 175576679 -6838563 - AluSx SINE Alu -2 310 5 966 165 25 0 chr6 175577053 175577211 -6838031 + FRAM SINE Alu 1 157 -19 1969 126 28 0 chr6 175577627 175577913 -6837329 + AluSg SINE Alu 1 294 -16 388 289 0 10 chr6 175579046 175579143 -6836099 + MIR SINE MIR 45 140 -68 1857 111 52 7 chr6 175579253 175579542 -6835700 - AluSx SINE Alu -10 302 1 22 0 0 0 chr6 175580222 175580244 -6834998 + AT_rich Low_complexity Low_complexity 1 22 0 506 358 89 15 chr6 175580571 175581113 -6834129 - L1MC4 LINE L1 -138 7904 7323 212 0 36 0 chr6 175581113 175581141 -6834101 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 459 245 127 72 chr6 175581188 175581774 -6833468 - L1MC4 LINE L1 -753 7208 6633 198 0 0 0 chr6 175581855 175581877 -6833365 + (T)n Simple_repeat Simple_repeat 1 22 0 222 191 0 0 chr6 175582266 175582313 -6832929 + (TG)n Simple_repeat Simple_repeat 1 47 0 297 213 82 41 chr6 175584010 175584132 -6831110 - L1ME4a LINE L1 -248 5873 5747 246 313 45 22 chr6 175584578 175584712 -6830530 - L2 LINE L2 -191 3081 2945 304 252 146 0 chr6 175585493 175585616 -6829626 - MER103 DNA DNA -23 143 3 1248 156 19 47 chr6 175587010 175587266 -6827976 - AluJo SINE Alu -17 295 47 2254 95 3 7 chr6 175588096 175588392 -6826850 + AluSg SINE Alu 1 295 -15 187 214 119 48 chr6 175588663 175588747 -6826495 - L2 LINE L2 -42 3230 3141 34 55 0 14 chr6 175589019 175589034 -6826208 + AT_rich Low_complexity Low_complexity 1 15 -57 2101 80 15 0 chr6 175589034 175589296 -6825946 + AluY SINE Alu 26 291 -20 34 55 0 14 chr6 175589296 175589353 -6825889 + AT_rich Low_complexity Low_complexity 15 72 0 21 36 0 0 chr6 175589484 175589512 -6825730 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 175590442 175590463 -6824779 + AT_rich Low_complexity Low_complexity 1 21 0 2017 99 85 0 chr6 175591107 175591389 -6823853 + AluSx SINE Alu 1 306 -6 3788 134 116 15 chr6 175592957 175593303 -6821939 - Tigger3(Golem) DNA MER2_type -1 3027 2717 188 86 29 0 chr6 175593303 175593338 -6821904 + (TGAG)n Simple_repeat Simple_repeat 4 39 0 3788 134 116 15 chr6 175593338 175593716 -6821526 - Tigger3(Golem) DNA MER2_type -311 2717 2230 2111 100 0 53 chr6 175593906 175594225 -6821017 - AluSx SINE Alu -6 306 5 1996 147 20 0 chr6 175594232 175594525 -6820717 - AluSx SINE Alu -13 299 1 228 310 46 11 chr6 175594892 175594979 -6820263 + MIR SINE MIR 82 171 -91 400 257 0 10 chr6 175595306 175595407 -6819835 + L2 LINE L2 3210 3309 -4 476 302 77 58 chr6 175596047 175596551 -6818691 - L2 LINE L2 -55 3258 2742 1720 200 64 11 chr6 175596555 175597009 -6818233 + Charlie1b DNA MER1_type 37 514 -9 503 300 100 0 chr6 175597010 175597240 -6818002 - L2 LINE L2 -582 2732 2480 185 258 16 48 chr6 175597273 175597335 -6817907 - L2 LINE L2 -925 2389 2330 22 0 0 0 chr6 175597414 175597436 -6817806 + AT_rich Low_complexity Low_complexity 1 22 0 2013 100 33 0 chr6 175597866 175598163 -6817079 + AluSg1 SINE Alu 3 308 0 357 271 82 53 chr6 175598833 175599003 -6816239 - MIR3 SINE MIR -25 183 9 22 0 0 0 chr6 175599477 175599499 -6815743 + AT_rich Low_complexity Low_complexity 1 22 0 1094 141 87 0 chr6 175599499 175599684 -6815558 - AluJb SINE Alu -25 287 87 1287 189 139 92 chr6 175599687 175600191 -6815051 - L1MD3 LINE L1 0 7995 7516 2308 87 0 0 chr6 175600191 175600489 -6814753 - AluY SINE Alu -13 298 1 1287 189 139 92 chr6 175600489 175600814 -6814428 - L1MD3 LINE L1 -479 7516 6921 21 36 0 0 chr6 175601214 175601242 -6814000 + AT_rich Low_complexity Low_complexity 1 28 0 1969 151 24 46 chr6 175601778 175602189 -6813053 - L1MA4A LINE L1 -2 6301 5900 2135 96 0 30 chr6 175603021 175603322 -6811920 + AluSq SINE Alu 1 292 -21 311 253 48 0 chr6 175604558 175604641 -6810601 + L1MC4 LINE L1 6610 6696 -1346 2113 134 0 0 chr6 175604641 175604933 -6810309 - AluSx SINE Alu -20 292 1 277 307 126 67 chr6 175605764 175606034 -6809208 + L3 LINE CR1 925 1210 -367 21 36 0 0 chr6 175606113 175606141 -6809101 + AT_rich Low_complexity Low_complexity 1 28 0 256 276 129 60 chr6 175606636 175606752 -6808490 - MIR3 SINE MIR -48 160 37 286 239 0 0 chr6 175607096 175607167 -6808075 - L2 LINE L2 -11 3261 3191 2263 109 0 0 chr6 175607299 175607602 -6807640 - AluSq SINE Alu -9 304 2 230 267 155 15 chr6 175607737 175607943 -6807299 - L1 LINE L1 -2269 3877 3643 21 0 0 0 chr6 175607973 175607994 -6807248 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 175608634 175608663 -6806579 + AT_rich Low_complexity Low_complexity 1 29 0 318 311 232 10 chr6 175609012 175609404 -6805838 + L2 LINE L2 1858 2336 -978 320 220 176 0 chr6 175610309 175610400 -6804842 + MIR3 SINE MIR 87 193 -15 916 322 127 13 chr6 175610517 175611000 -6804242 + L2 LINE L2 2772 3308 -5 659 224 89 39 chr6 175612024 175612203 -6803039 + MER5A DNA MER1_type 1 188 -1 712 273 72 61 chr6 175612284 175612643 -6802599 - L2 LINE L2 -40 3273 2911 293 125 0 0 chr6 175612760 175612800 -6802442 - U2 snRNA snRNA -148 40 1 379 268 87 8 chr6 175612803 175612930 -6802312 + MIR SINE MIR 80 216 -46 437 260 30 0 chr6 175612953 175613053 -6802189 + L2 LINE L2 3200 3302 -11 341 212 24 40 chr6 175613558 175613655 -6801587 - MLT1G1 LTR MaLR -16 579 290 1102 158 17 81 chr6 175613851 175614085 -6801157 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chr6 175615972 175615993 -6799249 + AT_rich Low_complexity Low_complexity 1 21 0 976 124 0 0 chr6 175616694 175616831 -6798411 - FLAM_C SINE Alu -6 137 1 190 387 0 0 chr6 175617353 175617415 -6797827 - L2 LINE L2 -692 2622 2561 282 354 0 23 chr6 175617883 175618013 -6797229 + MIR SINE MIR 127 253 -9 9444 186 51 18 chr6 175618915 175619924 -6795318 + L1 LINE L1 3115 4089 -2057 2034 118 16 10 chr6 175619924 175620228 -6795014 + AluSx SINE Alu 1 306 -6 9444 186 51 18 chr6 175620228 175620419 -6794823 + L1 LINE L1 4089 4272 -1874 2064 120 3 13 chr6 175620419 175620719 -6794523 + AluSq SINE Alu 1 297 -16 9444 186 51 18 chr6 175620719 175621733 -6793509 + L1 LINE L1 4272 5403 -743 546 142 183 8 chr6 175621773 175621893 -6793349 + L1MA9 LINE L1 6168 6308 -4 21 0 0 0 chr6 175622222 175622243 -6792999 + AT_rich Low_complexity Low_complexity 1 21 0 292 197 106 0 chr6 175622357 175622422 -6792820 + Tigger5 DNA MER2_type 7 78 -2245 355 215 13 13 chr6 175622422 175622501 -6792741 - Tigger5 DNA MER2_type -3 2320 2242 * 358 164 0 16 chr6 175622497 175622558 -6792684 + Tigger5 DNA MER2_type 2264 2323 0 194 288 0 68 chr6 175624146 175624219 -6791023 + L2 LINE L2 3204 3271 -1 226 363 51 48 chr6 175624974 175625247 -6789995 + L1ME LINE L1 566 839 -5280 317 297 112 30 chr6 175625329 175625991 -6789251 + L1ME LINE L1 959 1712 -4598 334 294 114 38 chr6 175626023 175626366 -6788876 + L1ME LINE L1 1789 2157 -4153 229 253 48 36 chr6 175626514 175626597 -6788645 + L1ME LINE L1 2316 2399 -3730 2476 147 47 7 chr6 175626600 175627029 -6788213 - Tigger2 DNA MER2_type 0 2718 2273 264 213 82 0 chr6 175627016 175627077 -6788165 - Tigger2 DNA MER2_type -2646 72 7 * 490 286 154 22 chr6 175627146 175627608 -6787634 + L1ME LINE L1 2654 3176 -2953 829 242 181 8 chr6 175627797 175628045 -6787197 - MLT1H LTR MaLR -258 291 1 1140 275 132 42 chr6 175628079 175629115 -6786127 + L1ME LINE L1 3226 4355 -1774 830 166 112 120 chr6 175629219 175629478 -6785764 + AluJo SINE Alu 1 257 -55 919 271 133 50 chr6 175629495 175629806 -6785436 + L1ME LINE L1 4451 4735 -1394 1772 176 12 23 chr6 175629806 175630152 -6785090 - MER2 DNA MER2_type -2 342 1 919 271 133 50 chr6 175630152 175630544 -6784698 + L1ME LINE L1 4735 5213 -916 593 256 96 7 chr6 175630564 175630857 -6784385 + L1ME LINE L1 5265 5583 -562 180 272 86 49 chr6 175631468 175631549 -6783693 - MIR SINE MIR -52 210 127 1900 145 0 3 chr6 175631578 175631894 -6783348 - AluSx SINE Alu 0 315 1 2193 75 32 11 chr6 175633581 175633863 -6781379 + AluSq SINE Alu 1 288 -25 2252 114 0 0 chr6 175633938 175634246 -6780996 - AluSg SINE Alu -1 309 2 216 0 0 0 chr6 175634810 175634834 -6780408 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 273 163 0 0 chr6 175634834 175634883 -6780359 + CT-rich Low_complexity Low_complexity 1 49 0 278 225 12 0 chr6 175635796 175635876 -6779366 + (TA)n Simple_repeat Simple_repeat 1 81 0 259 367 20 41 chr6 175635923 175636070 -6779172 + L2 LINE L2 3127 3270 -2 331 292 82 53 chr6 175636336 175636482 -6778760 - MIR3 SINE MIR -6 202 49 1692 133 33 27 chr6 175636482 175636783 -6778459 + AluJo SINE Alu 1 303 -9 331 292 82 53 chr6 175636783 175636807 -6778435 - MIR3 SINE MIR -159 49 27 3478 192 58 12 chr6 175636914 175637606 -6777636 - MER21B LTR ERV1 -51 812 89 8481 114 47 17 chr6 175637611 175638777 -6776465 - Tigger1 DNA MER2_type -29 2389 1176 1977 148 10 3 chr6 175638777 175639075 -6776167 - AluSx SINE Alu -9 303 4 8481 114 47 17 chr6 175639075 175639264 -6775978 - Tigger1 DNA MER2_type -1242 1176 994 1619 187 51 19 chr6 175639259 175639574 -6775668 - Tigger1 DNA MER2_type -2093 325 1 * 408 110 85 49 chr6 175639574 175639656 -6775586 - MER21B LTR ERV1 -778 85 1 230 171 24 0 chr6 175639770 175639811 -6775431 - 5S rRNA rRNA -79 42 1 1459 92 60 0 chr6 175640411 175640628 -6774614 + MER30 DNA MER1_type 1 230 0 1106 245 139 80 chr6 175641802 175642894 -6772348 - L1MC5 LINE L1 -72 7889 6733 397 318 124 69 chr6 175643070 175643740 -6771502 - L1MC4a LINE L1 -1290 6518 5812 363 285 12 0 chr6 175643835 175643951 -6771291 - L1MC4a LINE L1 -608 5554 5489 320 0 25 0 chr6 175644002 175644042 -6771200 + (TG)n Simple_repeat Simple_repeat 2 42 0 506 227 113 38 chr6 175644282 175644467 -6770775 - MER105 DNA DNA -2 202 4 328 279 132 0 chr6 175645414 175645550 -6769692 - L3 LINE CR1 -178 1399 1246 513 259 171 0 chr6 175645709 175645925 -6769317 - MER5C DNA MER1_type 0 324 72 25 0 0 0 chr6 175646045 175646070 -6769172 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr6 175646307 175646346 -6768896 + AT_rich Low_complexity Low_complexity 1 39 0 2089 108 14 3 chr6 175647711 175648006 -6767236 - AluSq SINE Alu -15 298 1 467 175 0 97 chr6 175648151 175648254 -6766988 + AluJ/FLAM SINE Alu 3 95 -217 758 242 131 16 chr6 175648646 175648952 -6766290 - MER2 DNA MER2_type -3 341 1 2318 206 36 48 chr6 175648990 175649237 -6766005 - MER82 DNA MER2_type -22 631 383 246 81 0 0 chr6 175649237 175649274 -6765968 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2318 206 36 48 chr6 175649274 175649481 -6765761 - MER82 DNA MER2_type -270 383 183 2141 129 3 0 chr6 175649481 175649792 -6765450 - AluSx SINE Alu 0 312 1 2318 206 36 48 chr6 175649792 175649938 -6765304 - MER82 DNA MER2_type -470 183 37 1510 215 168 37 chr6 175649985 175650586 -6764656 - L1MC4 LINE L1 -122 7920 7241 459 260 167 16 chr6 175650872 175651064 -6764178 - MIR SINE MIR -38 224 4 760 286 215 25 chr6 175651074 175651656 -6763586 + L2 LINE L2 2619 3313 0 443 315 15 0 chr6 175652308 175652438 -6762804 - MER94 DNA DNA -1 133 2 277 262 0 0 chr6 175652845 175652906 -6762336 - MER3 DNA MER1_type -148 61 1 323 290 37 0 chr6 175652978 175653085 -6762157 - L1MC4 LINE L1 0 8042 7932 1456 148 104 19 chr6 175653426 175653743 -6761499 - MER46B DNA MER2_type -17 219 1 573 284 149 28 chr6 175654376 175654958 -6760284 - L2 LINE L2 -79 3234 2579 26 30 0 0 chr6 175655674 175655707 -6759535 + AT_rich Low_complexity Low_complexity 1 33 0 1910 170 0 0 chr6 175656619 175656930 -6758312 + AluJb SINE Alu 2 312 0 2598 136 23 2 chr6 175657281 175657721 -6757521 - L1P4 LINE L1 -361 5805 5357 674 161 7 44 chr6 175657721 175657858 -6757384 - FLAM_C SINE Alu 0 133 2 557 182 0 18 chr6 175657859 175657969 -6757273 - L1 LINE L1 -1157 4989 4882 4317 220 42 27 chr6 175657969 175658328 -6756914 - L1P4 LINE L1 -814 5332 4980 1843 138 3 14 chr6 175658328 175658619 -6756623 - AluSx SINE Alu -23 289 2 4317 220 42 27 chr6 175658619 175659447 -6755795 - L1P4 LINE L1 -1166 4980 4127 5340 145 10 18 chr6 175659576 175660453 -6754789 + THE1C-int LTR MaLR 711 1580 0 1784 143 65 34 chr6 175660455 175660806 -6754436 + THE1C LTR MaLR 3 364 -11 242 323 195 24 chr6 175661162 175661326 -6753916 + L2 LINE L2 3066 3257 -15 502 329 51 14 chr6 175661871 175662087 -6753155 + L1ME LINE L1 6 229 -5841 3731 262 114 53 chr6 175662163 175663094 -6752148 + L1ME LINE L1 394 1266 -4814 2159 136 3 0 chr6 175663094 175663404 -6751838 - AluSq SINE Alu 0 313 3 3731 262 114 53 chr6 175663404 175663434 -6751808 + L1ME LINE L1 1266 1293 -4787 2044 111 4 0 chr6 175663434 175663713 -6751529 + AluSx SINE Alu 1 280 -32 252 86 0 0 chr6 175663713 175663748 -6751494 + (CAGT)n Simple_repeat Simple_repeat 4 38 0 3731 262 114 53 chr6 175663748 175664509 -6750733 + L1ME LINE L1 1293 2006 -4074 1914 147 0 7 chr6 175664509 175664839 -6750403 + AluSx SINE Alu 1 328 0 3731 262 114 53 chr6 175664839 175664854 -6750388 + L1ME LINE L1 2006 2019 -4061 2044 133 3 7 chr6 175664854 175665148 -6750094 + AluSx SINE Alu 1 293 -19 3731 262 114 53 chr6 175665148 175666973 -6748269 + L1ME LINE L1 2019 4138 -1942 912 289 49 20 chr6 175667002 175667410 -6747832 + L1MC/D LINE L1 2407 2826 -3320 1429 156 170 3 chr6 175667525 175667814 -6747428 + MER44D DNA MER2_type 2 608 -1 478 227 178 39 chr6 175668006 175668292 -6746950 - HsTC2 DNA Tc2 -115 1783 1282 709 263 72 25 chr6 175668299 175668607 -6746635 - LTR40b LTR ERVL 0 462 193 347 278 104 61 chr6 175669314 175670124 -6745118 + L1MC/D LINE L1 4973 5819 -751 2227 103 0 3 chr6 175670870 175671170 -6744072 - AluSc SINE Alu -10 299 1 183 42 0 0 chr6 175671613 175671637 -6743605 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 438 96 0 0 chr6 175671632 175671705 -6743537 + (TC)n Simple_repeat Simple_repeat 1 73 0 283 304 78 70 chr6 175671707 175671812 -6743430 - MLT2C1 LTR ERVL -58 339 236 571 217 46 7 chr6 175671812 175671964 -6743278 - MLT1E1 LTR MaLR -349 305 148 283 304 78 70 chr6 175671964 175671977 -6743265 - MLT2C1 LTR ERVL -161 236 68 941 151 11 28 chr6 175671981 175672160 -6743082 - AluSg/x SINE Alu -1 311 136 228 191 0 0 chr6 175672160 175672207 -6743035 - MLT1E1 LTR MaLR -532 92 46 482 262 0 0 chr6 175672248 175672351 -6742891 - MLT2F LTR ERVL -560 103 1 200 400 0 9 chr6 175672822 175672927 -6742315 - L2 LINE L2 0 3272 3169 21 0 0 0 chr6 175673203 175673224 -6742018 + AT_rich Low_complexity Low_complexity 1 21 0 234 350 119 7 chr6 175674019 175674162 -6741080 + MIR SINE MIR 5 163 -99 2244 94 7 0 chr6 175676112 175676398 -6738844 - AluSx SINE Alu -24 288 1 27 29 0 0 chr6 175676918 175676952 -6738290 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr6 175678836 175678868 -6736374 + AT_rich Low_complexity Low_complexity 1 32 0 2315 82 7 16 chr6 175679038 175679344 -6735898 - AluSp SINE Alu -10 303 1 515 302 28 22 chr6 175679411 175679593 -6735649 - MIR SINE MIR -10 252 70 291 82 82 0 chr6 175679864 175679937 -6735305 + CT-rich Low_complexity Low_complexity 2 80 0 1962 116 7 30 chr6 175679940 175680242 -6735000 - AluSg SINE Alu -15 295 1 274 259 9 71 chr6 175680403 175680515 -6734727 + MIR SINE MIR 110 214 -48 201 306 50 33 chr6 175683069 175683190 -6732052 + MIR SINE MIR 134 256 -6 390 291 51 13 chr6 175684448 175684606 -6730636 - L2 LINE L2 -919 2395 2232 726 240 88 35 chr6 175685406 175685781 -6729461 - HAL1 LINE L1 -1135 1372 978 314 246 131 47 chr6 175685925 175686116 -6729126 - HAL1 LINE L1 -2034 473 267 767 150 15 8 chr6 175686250 175686383 -6728859 - AluJo SINE Alu -178 134 1 1286 241 96 21 chr6 175686870 175687629 -6727613 - L1MEc LINE L1 -5465 931 36 1319 224 30 12 chr6 175687872 175688289 -6726953 - MER119 DNA MER1_type -2 581 93 281 341 24 24 chr6 175689043 175689207 -6726035 + MIR SINE MIR 13 176 -86 312 246 14 0 chr6 175689300 175689369 -6725873 + L2 LINE L2 3240 3309 -4 201 265 29 29 chr6 175689962 175690030 -6725212 + CT-rich Low_complexity Low_complexity 5 72 0 2277 103 0 3 chr6 175690226 175690527 -6724715 + AluSx SINE Alu 1 300 -12 963 154 108 47 chr6 175690935 175691149 -6724093 + Tigger2 DNA MER2_type 2482 2708 -10 301 289 36 12 chr6 175691202 175691285 -6723957 + L2 LINE L2 3186 3270 -2 1539 177 48 7 chr6 175691504 175691775 -6723467 + AluJo SINE Alu 1 282 -30 346 259 35 0 chr6 175691818 175691903 -6723339 + MIR SINE MIR 172 259 -3 310 267 38 61 chr6 175692441 175692572 -6722670 + L2 LINE L2 2720 2847 -467 1628 275 215 32 chr6 175692699 175693961 -6721281 - L2 LINE L2 -5 3308 1812 533 272 0 14 chr6 175693982 175694129 -6721113 + L2 LINE L2 677 821 -2493 598 293 9 62 chr6 175694238 175694463 -6720779 - L1MC/D LINE L1 -2144 5664 5452 1229 226 112 21 chr6 175695460 175696022 -6719220 - L1MC/D LINE L1 -2884 3262 2650 25 65 0 0 chr6 175696714 175696760 -6718482 + AT_rich Low_complexity Low_complexity 1 46 0 259 150 0 0 chr6 175698680 175698720 -6716522 - MER2 DNA MER2_type -8 337 298 1125 135 0 28 chr6 175698814 175698992 -6716250 - MER2 DNA MER2_type -172 173 1 27 0 0 0 chr6 175700407 175700434 -6714808 + AT_rich Low_complexity Low_complexity 1 27 0 64 43 0 0 chr6 175700548 175700640 -6714602 + AT_rich Low_complexity Low_complexity 1 92 0 25 65 0 0 chr6 175700738 175700784 -6714458 + AT_rich Low_complexity Low_complexity 1 46 0 231 269 133 64 chr6 175702101 175702365 -6712877 + L2 LINE L2 2288 2569 -745 232 250 154 66 chr6 175702748 175702884 -6712358 + L2 LINE L2 3123 3270 -2 370 259 28 0 chr6 175703056 175703164 -6712078 + L1MB7 LINE L1 6073 6183 -1 200 327 154 31 chr6 175703193 175703511 -6711731 - L2 LINE L2 -411 2903 2547 867 92 92 21 chr6 175703602 175703743 -6711499 - THE1C LTR MaLR -42 333 183 2015 151 0 3 chr6 175704007 175704311 -6710931 + AluSx SINE Alu 2 304 -8 1750 139 182 19 chr6 175704646 175705014 -6710228 - MSTC LTR MaLR 0 428 1 2359 81 0 3 chr6 175705242 175705540 -6709702 + AluY SINE Alu 1 297 -14 1002 205 45 90 chr6 175705699 175705987 -6709255 - MER21B LTR ERV1 0 863 589 2215 166 23 50 chr6 175706493 175706781 -6708461 - Tigger2a DNA MER2_type -2274 434 161 2341 88 7 7 chr6 175706781 175707087 -6708155 - AluY SINE Alu -5 306 1 2215 166 23 50 chr6 175707087 175707238 -6708004 - Tigger2a DNA MER2_type -2547 161 7 2155 115 7 7 chr6 175707621 175707979 -6707263 - AluSq SINE Alu 0 313 1 624 311 135 19 chr6 175709112 175709533 -6705709 + L2 LINE L2 2273 2742 -572 751 104 0 0 chr6 175709993 175710108 -6705134 + AluSc SINE Alu 186 300 -9 301 316 43 17 chr6 175710531 175710648 -6704594 + MIR SINE MIR 4 123 -139 2151 100 36 3 chr6 175710808 175711109 -6704133 + AluSq SINE Alu 1 311 -2 25 0 0 0 chr6 175711154 175711179 -6704063 + AT_rich Low_complexity Low_complexity 1 25 0 401 219 152 34 chr6 175711235 175711413 -6703829 + MER46C DNA MER2_type 124 322 -16 1127 240 178 3 chr6 175711520 175711907 -6703335 + L1ME2 LINE L1 5601 6055 -109 3193 95 47 6 chr6 175711907 175712401 -6702841 + L1MA3 LINE L1 5792 6305 0 2327 100 7 3 chr6 175712967 175713276 -6701966 - AluSg SINE Alu 0 310 1 198 286 48 48 chr6 175713368 175713431 -6701811 + MIR SINE MIR 33 95 -167 24 0 0 0 chr6 175713943 175713967 -6701275 + AT_rich Low_complexity Low_complexity 1 24 0 210 244 77 26 chr6 175714727 175714805 -6700437 - L2 LINE L2 -62 3251 3170 911 214 36 0 chr6 175714823 175715015 -6700227 - MER6B DNA MER2_type -11 199 1 370 299 63 8 chr6 175715496 175715623 -6699619 - MER94 DNA DNA 0 134 1 1834 165 0 3 chr6 175715902 175716199 -6699043 + AluJo SINE Alu 1 296 -16 857 182 0 0 chr6 175718794 175718937 -6696305 - Tigger3(Golem) DNA MER2_type -1 3028 2886 493 120 27 0 chr6 175718935 175719010 -6696232 - Tigger3(Golem) DNA MER2_type -2952 77 1 * 21 57 0 0 chr6 175720314 175720349 -6694893 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr6 175723203 175723229 -6692013 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 175723754 175723776 -6691466 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 175724291 175724313 -6690929 + AT_rich Low_complexity Low_complexity 1 22 0 199 120 20 20 chr6 175725209 175725259 -6689983 + T-rich Low_complexity Low_complexity 3 52 0 253 341 119 17 chr6 175732034 175732210 -6683032 + Charlie8 DNA MER1_type 133 326 -2091 1296 165 94 78 chr6 175733702 175734127 -6681115 - MSTB1 LTR MaLR 0 432 1 232 308 92 54 chr6 175736157 175736287 -6678955 - L2 LINE L2 -1 3271 3137 224 118 0 0 chr6 175737022 175737056 -6678186 + L2 LINE L2 3280 3313 0 2527 65 3 19 chr6 175788251 175788561 -6626681 - AluY SINE Alu -6 305 1 360 188 47 35 chr6 175789240 175789325 -6625917 + L1MCa LINE L1 1980 2065 -4361 359 255 64 0 chr6 175789291 175789374 -6625868 - L1MC4 LINE L1 -1339 6703 6612 * 2142 109 7 7 chr6 175789374 175789658 -6625584 - AluSg SINE Alu -26 284 1 515 278 13 20 chr6 175791495 175791535 -6623707 - MIR SINE MIR -19 243 204 948 215 16 0 chr6 175791535 175791721 -6623521 - MER5A DNA MER1_type 0 189 1 515 278 13 20 chr6 175791721 175791831 -6623411 - MIR SINE MIR -58 204 94 2517 139 46 10 chr6 175793115 175793532 -6621710 + MSTB1 LTR MaLR 1 432 0 252 0 0 0 chr6 175794625 175794653 -6620589 + (CA)n Simple_repeat Simple_repeat 2 29 0 382 367 36 29 chr6 175794785 175795060 -6620182 - L1MEc LINE L1 -4628 1768 1492 1792 119 0 8 chr6 175795479 175795722 -6619520 + AluSx SINE Alu 40 280 -32 1232 225 56 49 chr6 175795726 175796157 -6619085 + MLT1C LTR MaLR 22 455 -12 3302 119 14 2 chr6 175796193 175796688 -6618554 - L1PA13 LINE L1 0 6163 5663 200 359 48 54 chr6 175797775 175797822 -6617420 - MER91A DNA MER1_type -30 166 120 1668 129 241 11 chr6 175797822 175798001 -6617241 - MSTA LTR MaLR 0 428 291 228 35 0 0 chr6 175798001 175798030 -6617212 + (GA)n Simple_repeat Simple_repeat 1 29 0 1668 129 241 11 chr6 175798030 175798198 -6617044 - MSTA LTR MaLR -137 291 1 1478 161 79 45 chr6 175798205 175798558 -6616684 + MLT1A1 LTR MaLR 1 365 0 200 359 48 54 chr6 175798558 175798669 -6616573 - MER91A DNA MER1_type -82 114 1 2189 161 57 10 chr6 175798962 175799347 -6615895 + MER57A LTR ERV1 1 403 0 1790 115 0 4 chr6 175799518 175799761 -6615481 + AluSx SINE Alu 1 242 -70 2444 89 3 0 chr6 175800309 175800611 -6614631 - AluSx SINE Alu -9 303 1 2625 61 0 0 chr6 175801255 175801566 -6613676 + AluY SINE Alu 1 311 0 364 297 57 102 chr6 175801710 175801763 -6613479 + L1ME LINE L1 5380 5434 -687 2379 109 3 0 chr6 175801763 175802074 -6613168 + AluSx SINE Alu 1 312 0 364 297 57 102 chr6 175802074 175802303 -6612939 + L1ME LINE L1 5434 5649 -472 2214 113 0 7 chr6 175802314 175802606 -6612636 - AluSg SINE Alu -20 290 1 461 291 179 48 chr6 175802679 175803116 -6612126 - L1MC4a LINE L1 -1290 6518 6025 2080 144 0 10 chr6 175803138 175803436 -6611806 - AluSx SINE Alu -17 295 1 1509 294 62 10 chr6 175803441 175804036 -6611206 - L1MC4a LINE L1 -1868 5940 5315 1333 209 87 3 chr6 175804266 175804634 -6610608 - MER90 LTR ERV1 0 614 216 835 72 40 0 chr6 175804634 175804759 -6610483 - MSTA LTR MaLR -298 130 1 523 191 105 56 chr6 175804759 175804921 -6610321 - MER90 LTR ERV1 -412 202 33 189 355 118 20 chr6 175805703 175805855 -6609387 + MIR SINE MIR 88 254 -8 939 129 0 0 chr6 175806870 175807048 -6608194 + (TA)n Simple_repeat Simple_repeat 2 179 0 1911 114 41 4 chr6 175807050 175807321 -6607921 - AluSx SINE Alu -31 281 1 1719 217 35 62 chr6 175807549 175808061 -6607181 + MLT1D LTR MaLR 1 498 -7 288 205 181 12 chr6 175808918 175809001 -6606241 + MLT1D LTR MaLR 405 501 -4 2156 75 44 7 chr6 175809845 175810140 -6605102 - AluSc SINE Alu -3 306 1 259 319 82 47 chr6 175810269 175810501 -6604741 - L2 LINE L2 -86 3227 2988 1405 226 120 54 chr6 175811369 175811676 -6603566 - MLT1F1 LTR MaLR 0 567 214 2665 105 6 3 chr6 175811676 175812037 -6603205 + THE1B LTR MaLR 1 362 -2 1405 226 120 54 chr6 175812037 175812267 -6602975 - MLT1F1 LTR MaLR -353 214 1 447 218 46 29 chr6 175813640 175813814 -6601428 + (TGAG)n Simple_repeat Simple_repeat 2 178 0 249 271 0 0 chr6 175813815 175813992 -6601250 + (TG)n Simple_repeat Simple_repeat 1 177 0 304 295 60 47 chr6 175814770 175814919 -6600323 - MIR SINE MIR -72 190 40 416 285 145 23 chr6 175815745 175815917 -6599325 - MIR SINE MIR -54 208 16 888 230 0 25 chr6 175816691 175816887 -6598355 + MER58A DNA MER1_type 1 191 -33 648 66 0 28 chr6 175816887 175816993 -6598249 + (TTTC)n Simple_repeat Simple_repeat 3 105 0 2340 79 3 7 chr6 175816995 175817285 -6597957 - AluSq SINE Alu -18 295 7 294 160 0 0 chr6 175817294 175817344 -6597898 + MER58A DNA MER1_type 175 224 0 180 330 99 0 chr6 175817499 175817590 -6597652 + MIR3 SINE MIR 12 111 -97 2294 72 0 3 chr6 175819481 175819788 -6595454 - AluY SINE Alu -5 306 1 321 159 0 0 chr6 175819804 175819867 -6595375 + GA-rich Low_complexity Low_complexity 2 64 0 628 221 138 80 chr6 175819994 175820392 -6594850 + MLT1H LTR MaLR 114 534 -15 1489 99 0 0 chr6 175821375 175821577 -6593665 - AluY SINE Alu -6 305 104 2354 51 0 7 chr6 175821745 175822038 -6593204 + AluY SINE Alu 7 297 -14 1066 229 90 23 chr6 175822062 175822591 -6592651 - MLT1E1 LTR MaLR 0 654 2 826 212 205 39 chr6 175822638 175822921 -6592321 - MLT1A2 LTR MaLR 0 374 45 2313 86 0 0 chr6 175822933 175823225 -6592017 + AluSc SINE Alu 4 295 -14 309 156 62 47 chr6 175823227 175823291 -6591951 - MLT1A2 LTR MaLR -300 65 1 427 182 34 0 chr6 175824557 175824645 -6590597 - MER5A DNA MER1_type -2 187 97 347 257 38 19 chr6 175825196 175825301 -6589941 + MER5A DNA MER1_type 9 115 -74 238 336 42 25 chr6 175825367 175825486 -6589756 - MER5A DNA MER1_type -10 179 59 776 199 108 0 chr6 175825752 175825918 -6589324 + MER20 DNA MER1_type 36 219 0 636 199 19 112 chr6 175825928 175826134 -6589108 + MER5A DNA MER1_type 3 189 0 2227 103 0 0 chr6 175826802 175827103 -6588139 - AluSx SINE Alu -11 301 1 234 279 6 0 chr6 175827575 175827640 -6587602 - MIR SINE MIR -82 126 85 2009 134 0 0 chr6 175827940 175828232 -6587010 - AluSx SINE Alu -20 292 1 857 244 94 8 chr6 175828342 175828596 -6586646 + MLT1J1 LTR MaLR 1 276 -170 315 293 30 0 chr6 175828719 175828818 -6586424 + MIR SINE MIR 47 148 -114 797 255 105 20 chr6 175828955 175829202 -6586040 + MER102a DNA MER1_type 60 327 -3 848 204 5 47 chr6 175830645 175830836 -6584406 + MER5A DNA MER1_type 7 189 0 301 225 246 28 chr6 175831002 175831144 -6584098 - MER5B DNA MER1_type 0 178 6 2234 99 3 19 chr6 175831318 175831632 -6583610 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr6 175831914 175831935 -6583307 + AT_rich Low_complexity Low_complexity 1 21 0 2770 345 57 23 chr6 175832308 175833945 -6581297 - HERVL LTR ERVL -865 4789 3096 1725 197 18 46 chr6 175834055 175834446 -6580796 + MLT2C1 LTR ERVL 1 380 -17 551 303 94 70 chr6 175834454 175835096 -6580146 + L1M4 LINE L1 3006 3979 -2167 2299 170 65 0 chr6 175835648 175836047 -6579195 + MSTB LTR MaLR 2 426 0 307 188 0 24 chr6 175836756 175836841 -6578401 + T-rich Low_complexity Low_complexity 4 86 0 618 273 55 29 chr6 175836891 175837129 -6578113 - HAL1 LINE L1 -46 2461 2218 1453 254 52 56 chr6 175837159 175837247 -6577995 - HAL1 LINE L1 -479 2028 1941 974 127 0 0 chr6 175837247 175837389 -6577853 + L1MA1 LINE L1 6160 6301 -1 1453 254 52 56 chr6 175837389 175837874 -6577368 - HAL1 LINE L1 -566 1941 1457 577 243 42 42 chr6 175837889 175838173 -6577069 - HAL1 LINE L1 -1122 1385 1102 245 320 60 0 chr6 175838227 175838327 -6576915 - MLT1J LTR MaLR -79 432 327 858 269 5 5 chr6 175838402 175838610 -6576632 - MLT1J LTR MaLR -303 208 1 485 242 101 27 chr6 175841380 175841599 -6573643 + MIR SINE MIR 14 248 -14 220 343 22 8 chr6 175841683 175841817 -6573425 - L2 LINE L2 -220 3052 2917 303 215 0 0 chr6 175843588 175843709 -6571533 + (CA)n Simple_repeat Simple_repeat 2 122 0 608 177 0 11 chr6 175843728 175843909 -6571333 + (CA)n Simple_repeat Simple_repeat 2 180 0 408 233 0 0 chr6 175843956 175844128 -6571114 + (CA)n Simple_repeat Simple_repeat 2 173 0 331 365 104 10 chr6 175844773 175844965 -6570277 - MIR SINE MIR -12 250 41 255 284 63 55 chr6 175845020 175845147 -6570095 - MIR SINE MIR -56 206 79 195 323 0 0 chr6 175847071 175847133 -6568109 - MER5B DNA MER1_type -3 175 114 2250 67 40 3 chr6 175847136 175847436 -6567806 - AluY SINE Alu 0 311 1 262 200 55 0 chr6 175847568 175847623 -6567619 - MLT1I LTR MaLR -326 83 26 393 316 42 16 chr6 175849809 175849999 -6565243 + MLT1I LTR MaLR 51 245 -164 2056 87 7 13 chr6 175850512 175850838 -6564404 + AluY SINE Alu 1 311 0 335 323 145 20 chr6 175851141 175851444 -6563798 - L3 LINE CR1 -20 1557 1217 2896 115 14 7 chr6 175852038 175852463 -6562779 - MSTA LTR MaLR 0 428 1 181 313 52 26 chr6 175852527 175852642 -6562600 + L2 LINE L2 3153 3270 -2 185 191 64 7 chr6 175854447 175854588 -6560654 + (TA)n Simple_repeat Simple_repeat 2 150 0 6303 88 21 10 chr6 175854636 175855508 -6559734 + HERVL-A2 LTR ERVL 4774 5654 0 2134 165 33 39 chr6 175855508 175856066 -6559176 + MLT2A2 LTR ERVL 1 554 0 863 181 172 0 chr6 175857132 175857333 -6557909 + MLT1E1 LTR MaLR 2 239 -415 1527 145 46 0 chr6 175857333 175857574 -6557668 + MER54B LTR ERVL 4 255 -538 * 2718 133 14 18 chr6 175857573 175858009 -6557233 + MER54B LTR ERVL 360 793 0 1126 241 17 20 chr6 175858009 175858346 -6556896 + MLT1E1 LTR MaLR 227 654 0 428 50 0 17 chr6 175858797 175858857 -6556385 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 22 0 0 0 chr6 175858857 175858879 -6556363 + AT_rich Low_complexity Low_complexity 1 22 0 670 202 62 0 chr6 175858886 175859015 -6556227 - FRAM SINE Alu -39 137 1 630 263 93 66 chr6 175859976 175861004 -6554238 - L1MEc LINE L1 -2869 3260 2205 348 94 0 0 chr6 175861009 175861062 -6554180 + (TG)n Simple_repeat Simple_repeat 2 54 0 513 298 75 47 chr6 175861129 175861451 -6553791 - L1MEc LINE L1 -4092 2218 1888 944 250 85 72 chr6 175861522 175862133 -6553109 - L1MEc LINE L1 -4866 1253 635 363 259 59 30 chr6 175862176 175862311 -6552931 - L1MEc LINE L1 -5589 530 392 364 319 39 53 chr6 175862403 175862610 -6552632 - L1MEc LINE L1 -5910 209 6 714 286 92 9 chr6 175864124 175864351 -6550891 + MIR SINE MIR 12 257 -5 267 227 0 0 chr6 175864455 175864521 -6550721 + (TG)n Simple_repeat Simple_repeat 2 67 0 181 338 0 27 chr6 175865363 175865437 -6549805 + MIR3 SINE MIR 12 83 -125 878 256 28 9 chr6 175865512 175865723 -6549519 - MIR SINE MIR -10 252 38 620 279 64 27 chr6 175865771 175866068 -6549174 + MLT2C1 LTR ERVL 13 320 -77 198 320 88 32 chr6 175866320 175866445 -6548797 + L2 LINE L2 3127 3258 -14 215 213 43 0 chr6 175868124 175868171 -6547071 - MIR SINE MIR -116 146 98 255 354 70 28 chr6 175868930 175869145 -6546097 - L2 LINE L2 -103 3169 2946 201 276 53 13 chr6 175869435 175869511 -6545731 + MER91A DNA MER1_type 68 146 -50 642 269 39 77 chr6 175870220 175870496 -6544746 - MIR SINE MIR -8 254 1 1117 182 34 0 chr6 175870605 175870814 -6544428 + MER20 DNA MER1_type 1 216 -3 2434 74 0 7 chr6 175871538 175871847 -6543395 - AluY SINE Alu -4 307 1 21 71 0 0 chr6 175872178 175872220 -6543022 + AT_rich Low_complexity Low_complexity 1 42 0 1826 178 218 13 chr6 175874171 175874621 -6540621 - MER44D DNA MER2_type -7 698 157 2083 166 31 32 chr6 175874621 175875175 -6540067 - MLT2A2 LTR ERVL 0 554 2 739 177 43 0 chr6 175875185 175875326 -6539916 - MER44D DNA MER2_type -558 147 1 817 164 8 0 chr6 175875612 175875740 -6539502 + FLAM_A SINE Alu 8 136 -6 1316 143 82 0 chr6 175875764 175876009 -6539233 + L1MA5A LINE L1 6031 6295 -2 636 246 226 29 chr6 175876304 175876785 -6538457 - LTR50 LTR ERVL -122 673 8 706 267 123 16 chr6 175876944 175877239 -6538003 + MLT1G1 LTR MaLR 1 249 -281 27 0 0 0 chr6 175877252 175877279 -6537963 + AT_rich Low_complexity Low_complexity 1 27 0 269 300 254 14 chr6 175877283 175877633 -6537609 - L2 LINE L2 -949 2365 1932 1721 191 84 9 chr6 175877640 175878070 -6537172 - MLT1C LTR MaLR 0 467 6 213 302 162 27 chr6 175878101 175878323 -6536919 - L2 LINE L2 -1429 1885 1634 184 336 27 40 chr6 175879583 175879732 -6535510 + MIR SINE MIR 3 149 -113 277 358 85 11 chr6 175880946 175881122 -6534120 - L2 LINE L2 -665 2649 2461 648 243 71 25 chr6 175881343 175881582 -6533660 - MLT1H1 LTR MaLR -7 548 299 859 239 153 63 chr6 175882313 175882447 -6532795 - MLT1H1 LTR MaLR -2 553 432 1849 186 8 27 chr6 175882447 175882819 -6532423 + MLT1A1 LTR MaLR 1 365 0 859 239 153 63 chr6 175882819 175883110 -6532132 - MLT1H1 LTR MaLR -123 432 90 187 327 0 0 chr6 175883192 175883244 -6531998 - L2 LINE L2 0 3272 3221 1968 125 69 0 chr6 175883410 175883698 -6531544 - AluSx SINE Alu -4 308 1 279 218 35 35 chr6 175883801 175883888 -6531354 - MLT1H1 LTR MaLR -463 92 6 203 312 86 0 chr6 175884058 175884151 -6531091 + MIR SINE MIR 52 152 -110 213 281 12 50 chr6 175884273 175884372 -6530870 + MIR SINE MIR 51 144 -79 633 222 93 0 chr6 175885120 175885282 -6529960 + MER5A DNA MER1_type 6 182 -7 190 323 161 0 chr6 175890966 175891059 -6524183 - L2 LINE L2 -25 3288 3181 293 199 19 31 chr6 175891672 175891833 -6523409 + C-rich Low_complexity Low_complexity 3 161 0 274 320 6 6 chr6 175891938 175892039 -6523203 + CT-rich Low_complexity Low_complexity 3 172 0 1296 214 139 0 chr6 175892624 175892941 -6522301 + MLT1A1 LTR MaLR 5 365 0 346 291 50 73 chr6 175894206 175894326 -6520916 - MIR SINE MIR -18 244 128 2106 98 0 94 chr6 175894326 175894654 -6520588 + AluSx SINE Alu 1 297 -15 346 291 50 73 chr6 175894654 175894712 -6520530 - MIR SINE MIR -134 128 70 241 271 57 0 chr6 175894951 175895021 -6520221 - MLT1I LTR MaLR -16 393 320 261 178 78 0 chr6 175895498 175895588 -6519654 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 338 325 85 15 chr6 175895601 175895801 -6519441 + L2 LINE L2 3096 3309 -4 1439 201 85 65 chr6 175896165 175896623 -6518619 - MLT1C LTR MaLR 0 467 1 577 300 18 12 chr6 175896921 175897091 -6518151 + MIR3 SINE MIR 20 190 -18 359 225 232 7 chr6 175898663 175898805 -6516437 - MER104 DNA MER2_type -3 177 4 231 262 83 0 chr6 175898818 175898902 -6516340 - MIR SINE MIR -10 252 162 619 277 112 68 chr6 175898905 175899288 -6515954 - MLT1I LTR MaLR 0 409 10 748 221 7 0 chr6 175899304 175899449 -6515793 - MIR SINE MIR -114 148 3 364 268 14 56 chr6 175901032 175901174 -6514068 - MIR SINE MIR -46 216 81 339 296 35 0 chr6 175902386 175902501 -6512741 + MER69 DNA AcHobo 2406 2524 -2 359 274 49 0 chr6 175903112 175903214 -6512028 - MIR SINE MIR -80 182 76 279 272 0 0 chr6 175903444 175903536 -6511706 + (TG)n Simple_repeat Simple_repeat 1 92 0 276 298 159 20 chr6 175904884 175905035 -6510207 + MIR SINE MIR 14 185 -77 1905 124 95 0 chr6 175905527 175905810 -6509432 - AluSx SINE Alu -2 310 1 387 297 105 42 chr6 175906545 175906784 -6508458 - L1MC4a LINE L1 -1882 5926 5673 751 199 66 28 chr6 175907116 175907327 -6507915 + MER20 DNA MER1_type 1 219 0 442 284 31 49 chr6 175909634 175909796 -6505446 - MIR SINE MIR -92 170 12 263 233 12 70 chr6 175910195 175910281 -6504961 + MIR SINE MIR 165 245 -17 2060 105 0 61 chr6 175910369 175910706 -6504536 + AluSx SINE Alu 1 312 0 228 360 0 13 chr6 175911246 175911321 -6503921 + MIR3 SINE MIR 105 178 -30 231 206 206 0 chr6 175911503 175911571 -6503671 - MIR SINE MIR -91 171 90 534 229 154 0 chr6 175912076 175912251 -6502991 - L1MD2 LINE L1 -3 6356 6155 352 170 50 100 chr6 175912302 175912316 -6502926 + L1MD2 LINE L1 6026 6039 -320 1935 132 92 17 chr6 175912316 175912665 -6502577 - THE1C LTR MaLR 0 375 1 352 170 50 100 chr6 175912665 175912750 -6502492 + L1MD2 LINE L1 6039 6120 -239 354 319 81 32 chr6 175912940 175913125 -6502117 + MIR3 SINE MIR 9 202 -6 318 246 24 13 chr6 175913728 175913827 -6501415 - MLT1I LTR MaLR -261 148 66 500 316 107 0 chr6 175914133 175914301 -6500941 + MIR SINE MIR 77 262 0 182 253 50 91 chr6 175915946 175916045 -6499197 + L3 LINE CR1 1002 1096 -481 195 428 83 0 chr6 175916176 175916321 -6498921 + L2 LINE L2 3112 3268 -4 182 336 61 46 chr6 175916823 175916954 -6498288 + L3 LINE CR1 586 718 -859 352 335 35 9 chr6 175917443 175917610 -6497632 + MIR3 SINE MIR 31 198 -37 562 231 75 65 chr6 175919204 175919498 -6495744 - L1ME4a LINE L1 -32 6089 5793 405 243 84 46 chr6 175919558 175919745 -6495497 - L1M3 LINE L1 -452 5669 5486 665 154 9 0 chr6 175919766 175919876 -6495366 - FLAM_A SINE Alu -21 121 11 886 218 18 9 chr6 175921737 175921957 -6493285 - L1MB3 LINE L1 -2 6181 5960 1385 181 57 48 chr6 175922425 175922779 -6492463 - MLT1B LTR MaLR -13 377 21 180 0 0 0 chr6 175923274 175923294 -6491948 + (T)n Simple_repeat Simple_repeat 1 20 0 400 318 50 40 chr6 175924591 175924722 -6490520 + MIR SINE MIR 47 182 -80 2028 150 0 6 chr6 175924722 175925035 -6490207 - AluJo SINE Alu 0 312 2 400 318 50 40 chr6 175925035 175925104 -6490138 + MIR SINE MIR 182 249 -13 2530 93 58 0 chr6 175925332 175925676 -6489566 - THE1B LTR MaLR 0 364 1 210 347 44 16 chr6 175926770 175926955 -6488287 + MIR SINE MIR 21 208 -54 189 49 24 49 chr6 175929683 175929724 -6485518 + (TCC)n Simple_repeat Simple_repeat 1 40 0 1863 139 4 0 chr6 175930063 175930330 -6484912 + AluSq SINE Alu 1 268 -45 2256 115 0 10 chr6 175931257 175931570 -6483672 - AluSx SINE Alu -2 310 1 462 262 69 0 chr6 175931690 175931835 -6483407 + MIR SINE MIR 31 185 -77 1909 167 24 89 chr6 175932091 175932366 -6482876 - MLT1C LTR MaLR -7 460 169 2251 88 3 20 chr6 175932366 175932660 -6482582 - AluY SINE Alu -22 289 1 2360 79 7 3 chr6 175932669 175932959 -6482283 - AluY SINE Alu -20 291 1 1909 167 24 89 chr6 175932959 175933165 -6482077 - MLT1C LTR MaLR -306 161 1 866 348 98 27 chr6 175933194 175934310 -6480932 + L2 LINE L2 603 1797 -1517 4733 153 24 41 chr6 175934402 175934772 -6480470 - L1MB2 LINE L1 -7 6164 5789 342 0 0 0 chr6 175934772 175934810 -6480432 + (CA)n Simple_repeat Simple_repeat 2 39 0 2314 92 23 0 chr6 175934819 175935122 -6480120 - AluY SINE Alu -1 310 1 4733 153 24 41 chr6 175935122 175935635 -6479607 - L1MB2 LINE L1 -390 5781 5287 376 319 141 36 chr6 175935725 175936342 -6478900 + L2 LINE L2 1903 2619 -695 4123 103 4 2 chr6 175936342 175936895 -6478347 + MER41A LTR ERV1 1 554 0 376 319 141 36 chr6 175936895 175937050 -6478192 + L2 LINE L2 2619 2756 -558 2097 170 28 20 chr6 175937114 175937514 -6477728 + MER57A LTR ERV1 1 403 0 534 248 0 27 chr6 175938004 175938153 -6477089 + L2 LINE L2 3167 3311 -2 202 274 63 63 chr6 175939145 175939240 -6476002 + MIR SINE MIR 59 153 -109 224 359 11 0 chr6 175939391 175939483 -6475759 + MIR SINE MIR 159 251 -11 1188 204 127 70 chr6 175939996 175940162 -6475080 - MLT1C LTR MaLR 0 467 312 1460 121 5 0 chr6 175940162 175940360 -6474882 - AluSq SINE Alu -114 199 1 1188 204 127 70 chr6 175940360 175940635 -6474607 - MLT1C LTR MaLR -155 312 1 2026 77 4 4 chr6 175940704 175940988 -6474254 + AluY SINE Alu 35 311 0 2230 130 0 9 chr6 175944206 175944521 -6470721 + AluSx SINE Alu 1 312 0 23 0 0 0 chr6 175945736 175945759 -6469483 + AT_rich Low_complexity Low_complexity 1 23 0 220 341 72 30 chr6 175945797 175945964 -6469278 + MIR SINE MIR 34 207 -55 284 255 47 94 chr6 175946377 175946569 -6468673 + L1MEd LINE L1 2 184 -5935 768 255 57 99 chr6 175946697 175947431 -6467811 + L1MEd LINE L1 555 1257 -4862 295 303 178 25 chr6 175947604 175948742 -6466500 + L1MEd LINE L1 2115 3426 -2703 1648 136 78 37 chr6 175948760 175949054 -6466188 + AluJo SINE Alu 1 306 -6 318 260 10 0 chr6 175949189 175949285 -6465957 + L1ME3A LINE L1 5855 5951 -219 353 291 123 53 chr6 175949522 175949766 -6465476 + LTR40b LTR ERVL 135 395 -67 2030 135 0 0 chr6 175950052 175950334 -6464908 - AluSx SINE Alu -20 292 11 1060 197 84 69 chr6 175950667 175951088 -6464154 + L1MC5 LINE L1 6559 7010 -798 845 156 0 0 chr6 175951129 175951257 -6463985 - FLAM_A SINE Alu -5 128 1 857 235 81 95 chr6 175951273 175951906 -6463336 + L1MC5 LINE L1 7011 7634 -327 207 268 0 0 chr6 175953050 175953091 -6462151 + polypyrimidine Low_complexity Low_complexity 1 41 0 212 297 11 33 chr6 175953091 175953182 -6462060 - L2 LINE L2 0 3313 3225 2232 116 0 25 chr6 175953936 175954256 -6460986 - AluSx SINE Alu 0 312 1 437 336 35 17 chr6 175954933 175955165 -6460077 + MIR SINE MIR 23 258 -4 694 233 44 6 chr6 175955652 175955832 -6459410 + MER58A DNA MER1_type 34 220 -4 248 77 26 0 chr6 175957295 175957334 -6457908 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 283 301 110 29 chr6 175957748 175957921 -6457321 - MIR SINE MIR -74 188 2 193 283 57 19 chr6 175958092 175958198 -6457044 + MIR SINE MIR 126 235 -27 2433 99 0 0 chr6 175959884 175960187 -6455055 + AluSx SINE Alu 1 303 -9 2444 91 0 0 chr6 175960444 175960752 -6454490 + AluSx SINE Alu 1 308 -4 2427 77 0 0 chr6 175961696 175961994 -6453248 + AluSc SINE Alu 3 300 -9 246 247 86 25 chr6 175962003 175962084 -6453158 + HAL1b LINE L1 117 202 -1146 243 330 9 0 chr6 175963445 175963557 -6451685 + L1MC4a LINE L1 3493 3605 -2541 427 73 0 0 chr6 175963560 175963615 -6451627 + Alu SINE Alu 223 277 -34 273 182 0 0 chr6 175963629 175963684 -6451558 + (TATG)n Simple_repeat Simple_repeat 2 56 0 183 167 0 0 chr6 175963790 175963832 -6451410 + (TA)n Simple_repeat Simple_repeat 2 43 0 439 293 119 70 chr6 175964009 175964949 -6450293 + L1MC4a LINE L1 3723 4708 -1438 1562 259 52 52 chr6 175965389 175966065 -6449177 + L1MC4a LINE L1 5255 5930 -1878 255 133 0 0 chr6 175966091 175966136 -6449106 + (GA)n Simple_repeat Simple_repeat 2 46 0 245 285 117 7 chr6 175967552 175967689 -6447553 + L2 LINE L2 2595 2746 -568 211 300 27 45 chr6 175968012 175968122 -6447120 + L2 LINE L2 3161 3268 -4 30 89 0 0 chr6 175968330 175968409 -6446833 + AT_rich Low_complexity Low_complexity 1 79 0 301 383 0 0 chr6 175968650 175968778 -6446464 - L3b LINE CR1 -352 1231 1104 3803 171 66 29 chr6 175969689 175970406 -6444836 + L1MB7 LINE L1 5188 5948 -236 1970 163 48 0 chr6 175970406 175970738 -6444504 + MER7A DNA MER2_type 1 346 0 3803 171 66 29 chr6 175970738 175970965 -6444277 + L1MB7 LINE L1 5948 6165 -19 209 217 0 17 chr6 175971220 175971280 -6443962 + A-rich Low_complexity Low_complexity 2 60 0 1537 309 80 47 chr6 175971280 175972378 -6442864 + MER110A-int LTR ERV1 218 3494 -3307 353 270 83 107 chr6 175972348 175972729 -6442513 + MER110A-int LTR ERV1 1222 1592 -3055 * 2187 90 7 0 chr6 175972729 175973018 -6442224 + AluSg SINE Alu 1 291 -19 353 270 83 107 chr6 175973018 175973095 -6442147 + MER110A-int LTR ERV1 1592 1669 -2978 1769 186 12 3 chr6 175973102 175973424 -6441818 + MER2 DNA MER2_type 20 344 -1 5661 264 59 50 chr6 175973556 175975611 -6439631 + MER110A-int LTR ERV1 1881 3954 -693 1242 251 20 17 chr6 175975829 175976179 -6439063 + MER110A-int LTR ERV1 4227 4577 -70 696 128 40 24 chr6 175976398 175976523 -6438719 + MER110A LTR ERV1 16 142 -326 2926 279 93 13 chr6 175976650 175977893 -6437349 + L1MEc LINE L1 58 1400 -4996 5620 89 25 35 chr6 175977900 175978446 -6436796 + L1PB1 LINE L1 5259 5794 -357 294 29 0 0 chr6 175978446 175978481 -6436761 + (CA)n Simple_repeat Simple_repeat 2 36 0 5620 89 25 35 chr6 175978481 175978835 -6436407 + L1PB1 LINE L1 5794 6150 -1 1205 286 78 2 chr6 175978851 175979340 -6435902 + L1MEc LINE L1 1429 1954 -4442 1564 91 0 113 chr6 175979340 175979605 -6435637 + AluSc SINE Alu 1 235 -74 823 217 24 18 chr6 176029605 176029823 -6385419 + MER110A LTR ERV1 265 491 0 204 102 0 61 chr6 176029939 176029988 -6385254 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 195 42 0 0 chr6 176030134 176030158 -6385084 + (A)n Simple_repeat Simple_repeat 1 24 0 346 68 0 0 chr6 176032559 176032603 -6382639 - MLT2D LTR ERVL -2 412 369 247 178 39 23 chr6 176032659 176032788 -6382454 + (TA)n Simple_repeat Simple_repeat 2 132 0 1771 169 77 6 chr6 176032885 176033223 -6382019 - MLT2D LTR ERVL -49 365 4 267 259 89 7 chr6 176034117 176034252 -6380990 + L1ME4a LINE L1 5956 6101 -20 237 65 0 0 chr6 176036130 176036161 -6379081 + (TG)n Simple_repeat Simple_repeat 2 32 0 342 0 0 0 chr6 176037126 176037164 -6378078 + (CA)n Simple_repeat Simple_repeat 2 39 0 1142 153 37 0 chr6 176037958 176038147 -6377095 + MLT2B2 LTR ERVL 1 196 -319 1072 113 16 32 chr6 176038151 176038337 -6376905 + MLT2B2 LTR ERVL 333 515 0 214 250 0 0 chr6 176038365 176038421 -6376821 + T-rich Low_complexity Low_complexity 1 56 0 2011 146 138 0 chr6 176038918 176039294 -6375948 + MSTA LTR MaLR 1 428 0 2058 139 7 0 chr6 176039734 176040043 -6375199 + AluSx SINE Alu 1 311 -1 353 259 9 19 chr6 176040126 176040234 -6375008 + CT-rich Low_complexity Low_complexity 4 110 0 729 284 10 5 chr6 176042324 176042532 -6372710 + MIR SINE MIR 28 236 -26 2586 77 47 3 chr6 176043288 176043627 -6371615 - THE1A LTR MaLR -1 354 1 483 301 90 28 chr6 176043656 176044055 -6371187 - L1ME4a LINE L1 -6 6115 5692 301 333 38 11 chr6 176044161 176044344 -6370898 - L1ME4a LINE L1 -443 5678 5491 235 290 73 60 chr6 176044452 176044700 -6370542 - L1ME4a LINE L1 -31 6090 5840 538 298 59 21 chr6 176044754 176045039 -6370203 - L1ME4a LINE L1 -541 5580 5411 2043 143 0 16 chr6 176045183 176045498 -6369744 + AluSq SINE Alu 1 310 -3 258 32 0 0 chr6 176045559 176045590 -6369652 + (TG)n Simple_repeat Simple_repeat 2 32 0 246 306 198 29 chr6 176045593 176046178 -6369064 + L2 LINE L2 2294 2977 -337 327 357 7 7 chr6 176048505 176048645 -6366597 - MIR SINE MIR -97 165 26 258 174 13 33 chr6 176049452 176049534 -6365708 - MIR SINE MIR -65 143 104 1753 169 43 43 chr6 176049715 176050087 -6365155 + MLT1A2 LTR MaLR 1 372 -2 2348 73 47 3 chr6 176050821 176051121 -6364121 - AluSp SINE Alu 0 313 1 893 244 28 0 chr6 176051387 176051600 -6363642 - MER20 DNA MER1_type 0 219 1 203 306 0 0 chr6 176051868 176051917 -6363325 - MIR SINE MIR -63 145 97 481 238 198 43 chr6 176052349 176052823 -6362419 + L2 LINE L2 2746 3313 0 461 343 15 20 chr6 176053704 176053905 -6361337 - MIR SINE MIR 0 262 63 336 241 13 0 chr6 176056256 176056335 -6358907 + MER116 DNA Mariner 1 80 0 193 200 40 93 chr6 176056582 176056657 -6358585 - MIR3 SINE MIR -131 77 7 480 270 193 46 chr6 176057424 176057772 -6357470 - MLT1J2 LTR MaLR 0 450 48 271 265 46 80 chr6 176058507 176058658 -6356584 + MIR SINE MIR 104 249 -13 1807 204 72 41 chr6 176058687 176059172 -6356070 - MLT1D LTR MaLR 0 505 6 1700 175 23 10 chr6 176059187 176059495 -6355747 + AluJo SINE Alu 1 312 0 3160 173 55 7 chr6 176061092 176061710 -6353532 + L1MB1 LINE L1 5434 6081 -87 294 250 49 0 chr6 176061793 176061888 -6353354 + MIR SINE MIR 53 152 -56 2435 92 3 0 chr6 176062196 176062501 -6352741 - AluSx SINE Alu -6 306 1 198 71 0 0 chr6 176063170 176063198 -6352044 + (A)n Simple_repeat Simple_repeat 1 28 0 264 240 42 73 chr6 176065403 176065499 -6349743 - MER5A DNA MER1_type -84 105 13 1780 176 27 3 chr6 176066584 176066885 -6348357 + 7SLRNA srpRNA srpRNA 1 308 -12 254 250 163 0 chr6 176067213 176067293 -6347949 - MER81 DNA DNA 0 114 22 243 296 14 13 chr6 176068868 176068957 -6346285 + CT-rich Low_complexity Low_complexity 4 149 0 1847 102 0 0 chr6 176069930 176070176 -6345066 + AluSx SINE Alu 61 306 -6 3058 182 25 52 chr6 176071536 176072310 -6342932 - L1MA10 LINE L1 -2 6396 5644 2053 76 0 0 chr6 176072313 176072564 -6342678 - AluSp SINE Alu -5 308 58 390 134 0 0 chr6 176072593 176072660 -6342582 + L1 LINE L1 4789 4855 -1291 13285 213 55 14 chr6 176072682 176073993 -6341249 - L1MA10 LINE L1 -726 5650 4395 311 0 26 0 chr6 176073993 176074032 -6341210 + (TG)n Simple_repeat Simple_repeat 1 40 0 13285 213 55 14 chr6 176074032 176076730 -6338512 - L1MA10 LINE L1 -1981 4395 1811 1474 213 27 30 chr6 176076730 176077026 -6338216 - AluJo SINE Alu -17 295 1 13285 213 55 14 chr6 176077026 176077109 -6338133 - L1MA10 LINE L1 -4565 1811 1733 2342 177 5 25 chr6 176077109 176077550 -6337692 + Tigger2a DNA MER2_type 3 434 0 13285 213 55 14 chr6 176077550 176078570 -6336672 - L1MA10 LINE L1 -4643 1733 676 1551 271 52 19 chr6 176078673 176079157 -6336085 - L1MA10 LINE L1 -5640 501 2 2066 47 0 8 chr6 176079232 176079487 -6335755 + L1PA6 LINE L1 5896 6148 -6 21 0 0 0 chr6 176079488 176079509 -6335733 + AT_rich Low_complexity Low_complexity 1 21 0 950 193 39 77 chr6 176079517 176079802 -6335440 + MLT1A2 LTR MaLR 1 274 -100 * 1258 216 46 29 chr6 176079799 176080150 -6335092 - MLT1B LTR MaLR -33 357 1 397 271 17 0 chr6 176080150 176080268 -6334974 + MIR SINE MIR 143 262 0 208 303 61 40 chr6 176080660 176080759 -6334483 + L2 LINE L2 3168 3268 -4 350 214 23 15 chr6 176080845 176080976 -6334266 + GA-rich Low_complexity Low_complexity 3 134 0 289 329 186 12 chr6 176081633 176081794 -6333448 + MIR3 SINE MIR 11 199 -9 2338 107 0 0 chr6 176083746 176084046 -6331196 + AluSq SINE Alu 1 300 -13 312 260 69 93 chr6 176084531 176084735 -6330507 + MIR SINE MIR 64 262 0 2381 88 48 23 chr6 176084906 176085259 -6329983 + THE1B LTR MaLR 3 364 0 22 35 0 0 chr6 176088595 176088624 -6326618 + AT_rich Low_complexity Low_complexity 1 29 0 299 158 0 0 chr6 176088624 176088681 -6326561 + MLT2A2 LTR ERVL 397 453 0 661 169 81 98 chr6 176088808 176089156 -6326086 + MLT1C LTR MaLR 11 421 -46 333 0 0 0 chr6 176089205 176089242 -6326000 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2049 113 0 11 chr6 176089245 176089529 -6325713 - AluSx SINE Alu -31 281 1 985 184 129 15 chr6 176089963 176090235 -6325007 - MER33 DNA MER1_type 0 324 22 1996 133 23 16 chr6 176090511 176090819 -6324423 - AluJb SINE Alu -2 310 1 1961 122 43 4 chr6 176090829 176091107 -6324135 - AluSx SINE Alu -23 289 1 2150 89 22 32 chr6 176091781 176092096 -6323146 - AluSx SINE Alu 0 312 1 2090 198 44 50 chr6 176092488 176092730 -6322512 + LTR43 LTR ERV1 10 252 -350 2218 109 10 10 chr6 176092730 176093042 -6322200 + AluSq SINE Alu 1 312 -1 2090 198 44 50 chr6 176093042 176093396 -6321846 + LTR43 LTR ERV1 252 602 0 26 30 0 0 chr6 176094833 176094866 -6320376 + AT_rich Low_complexity Low_complexity 1 33 0 27 73 0 0 chr6 176095047 176095102 -6320140 + AT_rich Low_complexity Low_complexity 1 55 0 1910 166 0 3 chr6 176095102 176095392 -6319850 - AluJb SINE Alu -23 289 1 2036 134 7 0 chr6 176095775 176096066 -6319176 - AluSx SINE Alu -19 293 1 1778 180 20 0 chr6 176096746 176097051 -6318191 + AluJo SINE Alu 1 311 -1 479 284 38 44 chr6 176097720 176097956 -6317286 + MIR SINE MIR 4 236 -26 359 344 8 30 chr6 176099014 176099145 -6316097 - MIR3 SINE MIR -37 171 44 2182 130 0 0 chr6 176099279 176099578 -6315664 - AluSc SINE Alu -10 299 1 201 323 104 68 chr6 176100270 176100412 -6314830 + L2 LINE L2 1560 1695 -1619 2042 126 62 11 chr6 176100412 176100769 -6314473 - THE1C LTR MaLR 0 375 1 201 323 104 68 chr6 176100769 176101460 -6313782 + L2 LINE L2 1695 2423 -891 2185 128 3 0 chr6 176101628 176101926 -6313316 + AluSq SINE Alu 1 299 -14 469 289 41 14 chr6 176102227 176102521 -6312721 - L1M4 LINE L1 -3325 2821 2520 451 305 40 0 chr6 176102653 176102804 -6312438 - L2 LINE L2 -6 3307 3151 363 73 0 0 chr6 176102804 176102859 -6312383 + (CATA)n Simple_repeat Simple_repeat 2 56 0 400 387 65 21 chr6 176102981 176103317 -6311925 + L2 LINE L2 2883 3233 -39 1571 260 56 17 chr6 176104736 176105216 -6310026 - MLT1H LTR MaLR 0 549 51 1606 259 160 42 chr6 176105314 176106243 -6308999 + HAL1 LINE L1 1 1039 -1468 4077 144 19 5 chr6 176106249 176107036 -6308206 + L1 LINE L1 4255 5052 -1094 * 12714 171 27 12 chr6 176107029 176109825 -6305417 + L1MA5A LINE L1 2445 5319 -978 207 0 0 0 chr6 176109825 176109848 -6305394 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 12714 171 27 12 chr6 176109848 176110838 -6304404 + L1MA5A LINE L1 5319 6293 -4 2510 266 32 17 chr6 176110833 176111709 -6303533 + HAL1 LINE L1 1033 1921 -586 * 400 255 70 45 chr6 176111714 176111914 -6303328 + HAL1 LINE L1 2302 2506 -1 2189 264 54 16 chr6 176113026 176113111 -6302131 + L1MEc LINE L1 53 133 -6263 1376 186 0 0 chr6 176113111 176113347 -6301895 + MER46A DNA MER2_type 1 236 0 2189 264 54 16 chr6 176113347 176114025 -6301217 + L1MEc LINE L1 133 845 -5551 1809 259 44 58 chr6 176114038 176115030 -6300212 + L1MEc LINE L1 916 1893 -4503 349 245 259 7 chr6 176115041 176115180 -6300062 + MER63A DNA MER1_type 2 175 -35 764 133 108 35 chr6 176115197 176115400 -6299842 + L1MEc LINE L1 1897 2114 -4282 2065 108 7 4 chr6 176115453 176115759 -6299483 - AluSc SINE Alu 0 307 1 352 287 118 6 chr6 176115934 176116177 -6299065 + L1MC4a LINE L1 5630 5808 -313 197 224 30 0 chr6 176116851 176116918 -6298324 + CT-rich Low_complexity Low_complexity 4 72 0 30 59 0 0 chr6 176117151 176117202 -6298040 + AT_rich Low_complexity Low_complexity 1 51 0 298 270 151 31 chr6 176117407 176117550 -6297692 + MIR3 SINE MIR 38 190 -52 355 273 23 38 chr6 176118204 176118336 -6296906 + MER5A DNA MER1_type 39 168 -21 315 314 106 32 chr6 176118484 176118672 -6296570 + L2 LINE L2 3068 3269 -3 269 175 70 0 chr6 176118911 176118968 -6296274 - MIR SINE MIR -118 144 84 646 269 59 11 chr6 176119737 176119923 -6295319 + MIR SINE MIR 26 220 -42 399 235 87 0 chr6 176119955 176120070 -6295172 - MER63 DNA MER1_type -311 751 1 2113 114 48 0 chr6 176120445 176120735 -6294507 - AluSx SINE Alu -8 304 1 2254 119 39 30 chr6 176122551 176122912 -6292330 + THE1B LTR MaLR 1 364 0 547 266 134 17 chr6 176123531 176123888 -6291354 - HAL1 LINE L1 0 2507 2109 888 221 84 20 chr6 176123919 176124168 -6291074 + MLT1C LTR MaLR 200 464 -3 190 216 0 0 chr6 176124241 176124278 -6290964 + L2 LINE L2 2587 2623 -691 473 291 14 14 chr6 176125295 176125443 -6289799 - MIR SINE MIR -109 153 6 2205 138 0 0 chr6 176125880 176126227 -6289015 + AluSx SINE Alu 1 347 0 368 305 18 24 chr6 176127113 176127280 -6287962 + MER5B DNA MER1_type 7 172 -6 222 37 0 0 chr6 176128134 176128161 -6287081 + (A)n Simple_repeat Simple_repeat 1 27 0 230 183 67 0 chr6 176128240 176128300 -6286942 - L1ME4a LINE L1 -4 6117 6054 198 0 0 0 chr6 176128418 176128440 -6286802 + (TG)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr6 176128451 176128476 -6286766 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 176128565 176128595 -6286647 + AT_rich Low_complexity Low_complexity 1 30 0 370 98 0 0 chr6 176128888 176128939 -6286303 - L1ME LINE L1 -467 5654 5604 216 0 0 0 chr6 176128947 176128971 -6286271 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 448 132 0 0 chr6 176128987 176129055 -6286187 - AluS SINE Alu -244 69 2 234 280 67 27 chr6 176129068 176129143 -6286099 - L1ME LINE L1 -527 5594 5517 199 337 59 10 chr6 176131156 176131257 -6283985 - MIR3 SINE MIR -13 195 90 230 389 0 0 chr6 176131342 176131450 -6283792 - MIR SINE MIR -115 147 40 2285 109 0 7 chr6 176131610 176131913 -6283329 - AluSx SINE Alu -11 301 1 187 354 46 0 chr6 176132598 176132663 -6282579 - MIR SINE MIR -174 88 21 251 320 155 51 chr6 176132898 176133214 -6282028 + L3 LINE CR1 339 687 -890 351 335 126 36 chr6 176133238 176133367 -6281875 + L2 LINE L2 1969 2085 -1229 2418 88 13 0 chr6 176133367 176133673 -6281569 - AluY SINE Alu -1 310 1 351 335 126 36 chr6 176133673 176134232 -6281010 + L2 LINE L2 2085 2719 -595 208 376 74 11 chr6 176134362 176134551 -6280691 + L2 LINE L2 2871 3071 -201 2579 44 3 0 chr6 176134705 176135003 -6280239 - AluY SINE Alu -12 299 1 23 0 0 0 chr6 176135371 176135394 -6279848 + AT_rich Low_complexity Low_complexity 1 23 0 193 211 0 0 chr6 176135711 176135749 -6279493 + L2 LINE L2 3268 3305 -8 634 205 57 94 chr6 176136589 176136833 -6278409 - L1ME LINE L1 -4926 1456 1119 260 123 0 55 chr6 176136836 176136909 -6278333 + (TTC)n Simple_repeat Simple_repeat 1 69 0 1500 181 26 11 chr6 176136915 176137185 -6278057 - AluJo SINE Alu -38 274 1 654 219 127 45 chr6 176137185 176137580 -6277662 - L1ME LINE L1 -5088 1284 857 308 261 109 85 chr6 176137718 176138001 -6277241 - L1ME LINE L1 -5677 695 406 2605 51 0 0 chr6 176138027 176138320 -6276922 + AluY SINE Alu 1 293 -18 2604 253 77 10 chr6 176140336 176141018 -6274224 - L1ME3A LINE L1 -9 6161 5413 1907 138 19 19 chr6 176141018 176141330 -6273912 - AluJb SINE Alu 0 312 1 2604 253 77 10 chr6 176141330 176141469 -6273773 - L1ME3A LINE L1 -757 5413 5285 723 275 27 75 chr6 176141865 176142239 -6273003 - L3 LINE CR1 -19 1558 1203 307 252 114 38 chr6 176142876 176143007 -6272235 - L2 LINE L2 0 3313 3173 191 243 0 27 chr6 176143073 176143147 -6272095 + (CTA)n Simple_repeat Simple_repeat 2 73 0 2128 112 14 0 chr6 176143193 176143480 -6271762 + AluY SINE Alu 1 291 -20 289 207 195 0 chr6 176143635 176143717 -6271525 + MER103 DNA DNA 20 117 -49 211 339 99 8 chr6 176147091 176147212 -6268030 - L2 LINE L2 -5 3267 3136 1370 93 0 0 chr6 176147675 176147847 -6267395 - AluSg/x SINE Alu -5 307 136 2431 100 36 28 chr6 176147977 176148338 -6266904 - THE1B LTR MaLR 0 364 1 1043 176 121 17 chr6 176148483 176148722 -6266520 - ORSL DNA AcHobo -10 265 2 22 0 0 0 chr6 176149052 176149074 -6266168 + AT_rich Low_complexity Low_complexity 1 22 0 211 256 22 0 chr6 176150371 176150461 -6264781 + CT-rich Low_complexity Low_complexity 1 92 0 1248 157 147 26 chr6 176151105 176151225 -6264017 + MLT1A1 LTR MaLR 16 120 -245 2228 92 3 35 chr6 176151225 176151540 -6263702 + AluSg SINE Alu 1 305 -5 1248 157 147 26 chr6 176151540 176151731 -6263511 + MLT1A1 LTR MaLR 120 365 0 367 321 108 0 chr6 176152002 176152214 -6263028 + MIR SINE MIR 23 257 -5 282 343 60 0 chr6 176155574 176155708 -6259534 - L2 LINE L2 -4 3309 3168 445 262 116 0 chr6 176156072 176156236 -6259006 - MIR SINE MIR -34 228 46 268 173 91 64 chr6 176156283 176156393 -6258849 - MER5A DNA MER1_type -30 159 47 5298 50 5 0 chr6 176156737 176157380 -6257862 - L1PA6 LINE L1 0 6154 5509 367 230 230 16 chr6 176158155 176158342 -6256900 + L2 LINE L2 2314 2540 -774 227 354 62 0 chr6 176158345 176158441 -6256801 - MIR SINE MIR -140 122 21 24 0 0 0 chr6 176159180 176159204 -6256038 + AT_rich Low_complexity Low_complexity 1 24 0 607 335 43 24 chr6 176159256 176159629 -6255613 + L1MEd LINE L1 308 687 -5432 270 206 0 14 chr6 176159669 176159742 -6255500 + L1ME LINE L1 4762 4833 -1313 326 270 172 13 chr6 176159877 176160418 -6254824 + L1ME LINE L1 5023 5652 -469 183 369 65 14 chr6 176160533 176160750 -6254492 - L2 LINE L2 -1231 2083 1856 1638 37 0 0 chr6 176161807 176161996 -6253246 + L1PA3 LINE L1 5964 6152 -3 2736 148 16 95 chr6 176162549 176163206 -6252036 + MER4B LTR ERV1 4 779 0 325 257 21 10 chr6 176163257 176163365 -6251877 + MLT1J LTR MaLR 60 206 -289 1691 117 26 22 chr6 176163436 176163778 -6251464 - MER4A LTR ERV1 -2 662 261 705 91 0 10 chr6 176163778 176163877 -6251365 - MER4A LTR ERV1 -566 98 1 535 156 195 39 chr6 176163884 176164038 -6251204 + MLT1J LTR MaLR 327 504 -7 1647 161 183 14 chr6 176165093 176165453 -6249789 - MSTA LTR MaLR 0 428 8 4302 128 0 9 chr6 176166886 176167526 -6247716 + MER41B LTR ERV1 1 634 -1 209 211 39 0 chr6 176168062 176168114 -6247128 + G-rich Low_complexity Low_complexity 3 56 0 24 53 0 0 chr6 176168880 176168918 -6246324 + AT_rich Low_complexity Low_complexity 1 38 0 2078 113 7 10 chr6 176169205 176169505 -6245737 + AluSx SINE Alu 1 299 -13 913 165 72 47 chr6 176173997 176174233 -6241009 + ORSL DNA AcHobo 1 242 -33 232 250 0 29 chr6 176174251 176174319 -6240923 + GA-rich Low_complexity Low_complexity 1 66 0 2155 137 3 0 chr6 176174846 176175145 -6240097 - AluSx SINE Alu -12 300 1 313 264 74 8 chr6 176175225 176175346 -6239896 - MIR SINE MIR -56 206 78 2225 111 3 3 chr6 176175795 176176101 -6239141 + AluSx SINE Alu 1 306 -6 4061 133 27 21 chr6 176177549 176178256 -6236986 - MER50 LTR ERV1 -23 711 1 746 256 28 0 chr6 176180973 176181153 -6234089 - MER63A DNA MER1_type -25 185 1 507 176 168 0 chr6 176183161 176183286 -6231956 + MER103 DNA DNA 17 162 -4 559 190 0 0 chr6 176184994 176185094 -6230148 - MER53 DNA DNA -89 100 1 1721 147 4 29 chr6 176185198 176185477 -6229765 - AluJb SINE Alu -26 286 15 2235 104 7 0 chr6 176187256 176187553 -6227689 - AluSq SINE Alu -14 299 1 183 303 15 0 chr6 176187658 176187724 -6227518 - MIR SINE MIR -79 183 117 312 242 51 58 chr6 176187732 176187898 -6227344 - MLT1H LTR MaLR 0 590 425 243 221 29 29 chr6 176188149 176188217 -6227025 - MIR SINE MIR -146 116 49 885 186 57 0 chr6 176189990 176190183 -6225059 + L1MA7 LINE L1 6082 6285 -6 446 295 8 64 chr6 176193123 176193357 -6221885 + MIR SINE MIR 34 254 -8 481 276 119 41 chr6 176193526 176193769 -6221473 + L1ME3A LINE L1 5424 5685 -436 585 256 60 96 chr6 176193774 176194106 -6221136 + L1ME3A LINE L1 5792 6111 -59 2116 116 33 7 chr6 176194444 176194745 -6220497 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr6 176194793 176194814 -6220428 + AT_rich Low_complexity Low_complexity 1 21 0 408 245 19 28 chr6 176194908 176195014 -6220228 - MER34 LTR ERV1 0 542 438 1889 138 10 23 chr6 176195014 176195318 -6219924 + AluSx SINE Alu 5 304 -8 1042 236 166 3 chr6 176195318 176195632 -6219610 - MER34 LTR ERV1 -153 389 25 2092 125 14 7 chr6 176196000 176196297 -6218945 - AluSx SINE Alu -13 299 1 192 356 44 0 chr6 176196315 176196405 -6218837 + L2 LINE L2 3123 3216 -56 358 290 60 38 chr6 176196481 176196798 -6218444 + L1ME4a LINE L1 5729 6052 -69 21 57 0 0 chr6 176196849 176196884 -6218358 + AT_rich Low_complexity Low_complexity 1 35 0 763 301 106 33 chr6 176198966 176200062 -6215180 + L1MC4a LINE L1 3808 5019 -1127 738 277 110 38 chr6 176200386 176200886 -6214356 + L1MC4a LINE L1 5315 5812 -309 1511 221 34 49 chr6 176200943 176201413 -6213829 + MLT1C LTR MaLR 1 463 -4 7818 23 1 2 chr6 176202017 176203621 -6211621 - L1PA4 LINE L1 -1 6154 4551 471 292 73 10 chr6 176204137 176204329 -6210913 - Charlie8 DNA MER1_type -2213 204 1 21 0 0 0 chr6 176204680 176204701 -6210541 + AT_rich Low_complexity Low_complexity 1 21 0 805 218 11 17 chr6 176204737 176204911 -6210331 + L1ME1 LINE L1 38 210 -6186 * 2185 203 83 71 chr6 176204909 176205364 -6209878 + L1ME1 LINE L1 5236 5684 -551 2177 91 0 46 chr6 176205364 176205671 -6209571 + AluY SINE Alu 1 293 -18 2185 203 83 71 chr6 176205671 176205892 -6209350 + L1ME1 LINE L1 5684 5918 -317 2103 123 7 7 chr6 176205892 176206193 -6209049 - AluSq SINE Alu -2 311 11 2185 203 83 71 chr6 176206193 176206348 -6208894 + L1ME1 LINE L1 5918 6070 -165 2302 153 23 16 chr6 176206388 176206551 -6208691 + L1MB3 LINE L1 5749 5909 -274 1616 194 10 65 chr6 176206551 176206717 -6208525 - MLT1A1 LTR MaLR 0 365 192 1841 138 30 30 chr6 176206717 176207014 -6208228 - AluJo SINE Alu -1 311 15 1616 194 10 65 chr6 176207014 176207233 -6208009 - MLT1A1 LTR MaLR -173 192 1 2302 153 23 16 chr6 176207233 176207499 -6207743 + L1MB3 LINE L1 5909 6181 -2 418 286 9 0 chr6 176207593 176207705 -6207537 - MER45 DNA AcHobo -1465 116 4 358 271 14 56 chr6 176207706 176207850 -6207392 + L1MA10 LINE L1 6193 6330 -4 486 278 105 0 chr6 176208325 176208487 -6206755 + MIR SINE MIR 55 233 -29 1994 60 0 0 chr6 176208682 176208917 -6206325 + AluY SINE Alu 70 304 -7 261 351 53 0 chr6 176210562 176210676 -6204566 - MIR SINE MIR -17 245 126 193 222 20 0 chr6 176211225 176211324 -6203918 + (CA)n Simple_repeat Simple_repeat 1 101 0 219 69 0 0 chr6 176211349 176211378 -6203864 + (A)n Simple_repeat Simple_repeat 1 29 0 1836 162 3 19 chr6 176213590 176213904 -6201338 - AluJb SINE Alu -3 309 1 2651 43 0 0 chr6 176214180 176214484 -6200758 + AluY SINE Alu 1 304 -7 1753 184 33 0 chr6 176216190 176216489 -6198753 + AluJb SINE Alu 1 309 -3 205 197 26 0 chr6 176216615 176216691 -6198551 + (TA)n Simple_repeat Simple_repeat 1 78 0 2287 94 10 0 chr6 176216710 176216998 -6198244 - AluSc SINE Alu -18 291 1 4231 89 10 20 chr6 176219972 176220567 -6194675 + L1PA10 LINE L1 5579 6167 -1 1246 81 17 6 chr6 176220933 176221105 -6194137 + L1P4 LINE L1 5621 5794 -374 1733 193 3 7 chr6 176221857 176222162 -6193080 - AluJb SINE Alu -6 306 3 284 347 35 6 chr6 176222224 176222394 -6192848 + L2 LINE L2 2217 2391 -923 2129 119 0 0 chr6 176223043 176223329 -6191913 - AluSx SINE Alu -6 306 21 339 218 0 0 chr6 176225380 176225481 -6189761 + (CA)n Simple_repeat Simple_repeat 2 102 0 28 0 0 0 chr6 176225501 176225529 -6189713 + AT_rich Low_complexity Low_complexity 1 28 0 301 43 43 0 chr6 176227849 176227896 -6187346 + (CA)n Simple_repeat Simple_repeat 2 50 0 279 305 78 21 chr6 176229869 176230010 -6185232 + MIR SINE MIR 92 240 -22 265 61 20 41 chr6 176230716 176230765 -6184477 + (AGGGGG)n Simple_repeat Simple_repeat 5 52 0 240 233 67 0 chr6 176230765 176230825 -6184417 + polypurine Low_complexity Low_complexity 4 67 0 3514 159 32 10 chr6 176231921 176232537 -6182705 + L1PB4 LINE L1 5524 6153 -3 1925 147 9 18 chr6 176232546 176232872 -6182370 + MER39B LTR ERV1 255 577 -76 284 252 50 65 chr6 176234660 176234799 -6180443 - MIR SINE MIR -70 192 56 2134 143 0 0 chr6 176235314 176235621 -6179621 - AluSq SINE Alu -6 307 1 679 259 75 4 chr6 176237776 176238004 -6177238 + MIR SINE MIR 4 247 -15 461 226 119 25 chr6 176238671 176238830 -6176412 - MIR SINE MIR -22 240 67 2152 156 68 34 chr6 176238830 176239272 -6175970 - LTR2B LTR ERV1 0 490 34 21 71 0 0 chr6 176239367 176239409 -6175833 + AT_rich Low_complexity Low_complexity 1 42 0 217 86 0 29 chr6 176239472 176239507 -6175735 - MIR3 SINE MIR -17 191 158 186 282 269 13 chr6 176241885 176241963 -6173279 - L2 LINE L2 -10 3262 3165 412 341 0 0 chr6 176242096 176242403 -6172839 + (TG)n Simple_repeat Simple_repeat 1 307 0 1862 323 54 49 chr6 176242501 176243623 -6171619 + L2 LINE L2 338 1465 -1849 249 319 63 53 chr6 176243665 176243872 -6171370 + L2 LINE L2 2424 2632 -682 379 286 67 58 chr6 176243872 176244214 -6171028 - MLT1J LTR MaLR -4 507 163 670 314 120 19 chr6 176244365 176244990 -6170252 + L2 LINE L2 2632 3313 0 263 274 41 14 chr6 176247089 176247162 -6168080 - MER91B DNA MER1_type -113 77 3 196 323 11 32 chr6 176247229 176247322 -6167920 - L2 LINE L2 -265 3007 2917 732 200 0 0 chr6 176247630 176247810 -6167432 + (CA)n Simple_repeat Simple_repeat 1 180 0 498 174 0 0 chr6 176247838 176247947 -6167295 + (CA)n Simple_repeat Simple_repeat 1 109 0 509 272 45 34 chr6 176248339 176248518 -6166724 - MIR SINE MIR -30 232 53 200 167 0 0 chr6 176248587 176248617 -6166625 + polypurine Low_complexity Low_complexity 1 30 0 422 260 149 7 chr6 176249872 176250026 -6165216 - MIR SINE MIR 0 262 87 206 308 0 15 chr6 176250206 176250271 -6164971 + L2 LINE L2 3250 3313 0 192 374 121 0 chr6 176251457 176251623 -6163619 - MIR SINE MIR -6 256 71 241 336 60 45 chr6 176252050 176252184 -6163058 + L2 LINE L2 3118 3253 -19 242 320 0 13 chr6 176252586 176252664 -6162578 + (TG)n Simple_repeat Simple_repeat 1 77 0 2345 82 23 7 chr6 176254144 176254450 -6160792 - AluY SINE Alu 0 311 1 1199 160 23 151 chr6 176254769 176255119 -6160123 + MLT1A1 LTR MaLR 4 308 -57 270 0 0 0 chr6 176255248 176255278 -6159964 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 201 330 113 28 chr6 176256939 176257045 -6158197 - L2 LINE L2 -30 3242 3128 383 278 130 0 chr6 176257096 176257204 -6158038 - MER58A DNA MER1_type 0 123 2 1916 177 74 20 chr6 176257756 176258100 -6157142 + MSTA LTR MaLR 1 372 -56 14340 36 3 0 chr6 176258100 176260494 -6154748 - L1PA4 LINE L1 0 6155 3753 1916 177 74 20 chr6 176260494 176260555 -6154687 + MSTA LTR MaLR 372 428 0 462 79 0 0 chr6 176261252 176261315 -6153927 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 1359 193 7 52 chr6 176261323 176261629 -6153613 - AluJo SINE Alu -15 297 6 1413 116 25 0 chr6 176264441 176264639 -6150603 + AluSg/x SINE Alu 87 289 -21 5427 219 89 42 chr6 176264654 176265397 -6149845 - MER45R DNA AcHobo -1 1580 873 2413 69 0 3 chr6 176265397 176265700 -6149542 + AluY SINE Alu 9 310 -1 5427 219 89 42 chr6 176265700 176266464 -6148778 - MER45R DNA AcHobo -708 873 2 1040 149 7 0 chr6 176267673 176267827 -6147415 - AluSg/x SINE Alu -20 292 138 1444 113 26 35 chr6 176269691 176269920 -6145322 + THE1B LTR MaLR 1 227 -137 1106 173 0 0 chr6 176269932 176270100 -6145142 - AluJo SINE Alu -25 287 120 27 29 0 0 chr6 176270232 176270266 -6144976 + AT_rich Low_complexity Low_complexity 1 34 0 368 247 116 27 chr6 176270282 176270428 -6144814 + L1ME4a LINE L1 5956 6114 -7 2364 131 126 5 chr6 176271105 176271487 -6143755 - MSTA LTR MaLR 0 428 1 832 271 99 48 chr6 176271916 176272035 -6143207 - L1M4 LINE L1 -1048 5098 4986 1608 178 10 31 chr6 176272035 176272328 -6142914 - AluJo SINE Alu -25 287 1 832 271 99 48 chr6 176272328 176272703 -6142539 - L1M4 LINE L1 -1160 4986 4579 1731 133 13 57 chr6 176272861 176273178 -6142064 - L1MA9 LINE L1 0 6312 6010 404 259 103 18 chr6 176273188 176273470 -6141772 - L1M4 LINE L1 -1618 4528 4223 * 4930 96 21 0 chr6 176273461 176274119 -6141123 + THE1B-int LTR MaLR 909 1580 0 2280 129 51 28 chr6 176274119 176274475 -6140767 + THE1B LTR MaLR 1 364 0 344 234 24 40 chr6 176274475 176274599 -6140643 - L1M4 LINE L1 -2109 4037 3916 * 352 274 16 8 chr6 176274597 176274721 -6140521 + L1M4 LINE L1 5132 5256 -890 586 186 70 29 chr6 176274767 176274939 -6140303 + L1MD3 LINE L1 6927 7105 -890 360 247 12 0 chr6 176274939 176275024 -6140218 + MLT1F1 LTR MaLR 34 119 -448 546 200 9 0 chr6 176275052 176275162 -6140080 + L1MD3 LINE L1 7447 7557 -438 796 326 23 49 chr6 176276236 176276586 -6138656 + L3 LINE CR1 1198 1538 -39 202 290 65 43 chr6 176277126 176277219 -6138023 - L2 LINE L2 -20 3293 3199 1076 269 43 43 chr6 176277673 176278030 -6137212 - L1MCb LINE L1 -5582 463 249 2089 71 8 0 chr6 176278030 176278284 -6136958 - AluSx SINE Alu -18 294 39 1076 269 43 43 chr6 176278284 176278533 -6136709 - L1MCb LINE L1 -5796 249 1 1082 297 121 8 chr6 176278533 176279308 -6135934 + L1MD1 LINE L1 2795 3657 -2489 2206 139 53 29 chr6 176279308 176279828 -6135414 + MLT2A2 LTR ERVL 1 554 0 348 243 47 0 chr6 176279832 176279939 -6135303 - L1M4 LINE L1 -1275 4871 4760 2099 260 31 36 chr6 176279948 176280429 -6134813 - L1M4 LINE L1 -1996 4150 3673 1578 121 86 35 chr6 176280429 176280744 -6134498 - L1MA10 LINE L1 0 6334 6004 2099 260 31 36 chr6 176280744 176281043 -6134199 - L1M4 LINE L1 -2473 3673 3374 * 3898 197 82 25 chr6 176281042 176282303 -6132939 + L1MD1 LINE L1 4915 6236 -6 1200 134 0 0 chr6 176284847 176285018 -6130224 - AluSg/x SINE Alu -11 301 131 470 341 68 8 chr6 176285808 176286204 -6129038 - L1ME3 LINE L1 -333 5812 5393 285 231 154 105 chr6 176286574 176287618 -6127624 - L1ME3 LINE L1 -877 5252 4158 285 271 99 95 chr6 176287697 176287959 -6127283 - L2 LINE L2 -1 3312 3050 538 291 170 23 chr6 176287981 176288246 -6126996 - L2 LINE L2 -667 2647 2344 308 330 86 5 chr6 176288434 176288655 -6126587 - L1ME3 LINE L1 -4643 1667 1429 566 279 15 42 chr6 176288795 176289057 -6126185 - L1ME3 LINE L1 -4910 1209 955 341 324 70 46 chr6 176289192 176289433 -6125809 - L1ME3 LINE L1 -5308 811 565 3954 170 35 53 chr6 176290342 176291921 -6123321 + L1MA6 LINE L1 4617 6273 -27 183 127 109 0 chr6 176293870 176293925 -6121317 + (CATG)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr6 176293964 176293985 -6121257 + AT_rich Low_complexity Low_complexity 1 21 0 1413 270 107 26 chr6 176294081 176294822 -6120420 + L1MC4 LINE L1 7073 7873 -169 316 243 47 84 chr6 176297966 176298073 -6117169 - MER5A DNA MER1_type -24 165 63 4261 213 59 23 chr6 176298080 176298594 -6116648 - L1MD2 LINE L1 -17 6342 5848 2111 141 52 19 chr6 176298594 176298957 -6116285 - THE1C LTR MaLR 0 375 1 4261 213 59 23 chr6 176298957 176299850 -6115392 - L1MD2 LINE L1 -511 5848 4882 1413 223 37 29 chr6 176299880 176300262 -6114980 - MSTD LTR MaLR -11 385 1 3054 245 49 17 chr6 176300300 176301381 -6113861 - L1MD2 LINE L1 -1281 4865 3750 30 0 0 0 chr6 176301404 176301434 -6113808 + AT_rich Low_complexity Low_complexity 1 30 0 329 293 65 0 chr6 176301976 176302099 -6113143 - L2 LINE L2 0 3313 3183 201 283 17 0 chr6 176303489 176303549 -6111693 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 226 191 21 0 chr6 176303844 176303891 -6111351 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 870 234 80 43 chr6 176305733 176306109 -6109133 - MLT1B LTR MaLR 0 390 1 300 348 77 20 chr6 176306891 176307242 -6108000 - HERV16 LTR ERVL -4218 778 408 529 24 169 0 chr6 176307523 176307606 -6107636 + AluSp/q SINE Alu 208 304 -9 232 198 47 113 chr6 176307928 176308034 -6107208 - MLT1K LTR MaLR -44 544 446 244 281 74 16 chr6 176308273 176308394 -6106848 - MLT1K LTR MaLR -427 161 34 261 0 0 0 chr6 176308405 176308434 -6106808 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 819 89 0 0 chr6 176308453 176308565 -6106677 + AluSp/q SINE Alu 201 312 -1 2068 122 11 0 chr6 176309756 176310042 -6105200 + AluSq SINE Alu 19 307 -6 205 156 0 0 chr6 176311009 176311041 -6104201 + CT-rich Low_complexity Low_complexity 2 33 0 216 0 0 0 chr6 176312197 176312221 -6103021 + (TCC)n Simple_repeat Simple_repeat 2 25 0 226 221 70 47 chr6 176312546 176312632 -6102610 - MIR SINE MIR -38 224 137 1521 202 42 11 chr6 176313929 176314306 -6100936 + MLT2C1 LTR ERVL 1 389 -8 207 139 0 0 chr6 176314313 176314349 -6100893 + (TG)n Simple_repeat Simple_repeat 1 36 0 325 270 135 51 chr6 176314398 176314754 -6100488 + L1MC4a LINE L1 2915 3300 -2846 249 91 0 0 chr6 176314818 176314851 -6100391 - tRNA-Cys-TGC tRNA tRNA -38 37 5 307 295 27 18 chr6 176315053 176315165 -6100077 + L1MC4a LINE L1 3595 3707 -2439 384 253 17 23 chr6 176315202 176315376 -6099866 + L1MC4a LINE L1 3787 3959 -2187 205 186 51 0 chr6 176315478 176315537 -6099705 + (TA)n Simple_repeat Simple_repeat 2 63 0 293 255 94 14 chr6 176315682 176315894 -6099348 + L1MC4a LINE L1 4194 4422 -1724 638 198 62 31 chr6 176316117 176316279 -6098963 + L1PA15 LINE L1 5990 6156 -9 424 220 16 152 chr6 176316653 176316837 -6098405 + L1MC4a LINE L1 5257 5384 -2424 2286 49 3 10 chr6 176316837 176317125 -6098117 + AluY SINE Alu 1 286 -25 424 220 16 152 chr6 176317125 176317249 -6097993 + L1MC4a LINE L1 5384 5523 -2285 336 104 30 30 chr6 176317268 176317335 -6097907 + MADE1 DNA Mariner 4 70 -10 1517 34 0 0 chr6 176317347 176317525 -6097717 - AluY SINE Alu 0 311 134 322 137 0 0 chr6 176317525 176317576 -6097666 + MADE1 DNA Mariner 30 80 0 626 253 37 5 chr6 176317576 176317766 -6097476 + L1MC4a LINE L1 5555 5750 -2058 2623 148 30 71 chr6 176317767 176318333 -6096909 + MER44D DNA MER2_type 1 598 -7 227 290 58 0 chr6 176318342 176318480 -6096762 + L1MC4a LINE L1 5753 5898 -1910 391 250 240 20 chr6 176318611 176318907 -6096335 + L1MC4a LINE L1 6108 6468 -1340 197 59 59 0 chr6 176318991 176319025 -6096217 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 315 0 0 0 chr6 176319835 176319870 -6095372 + (TG)n Simple_repeat Simple_repeat 1 35 0 692 303 130 49 chr6 176321410 176322140 -6093102 - L2 LINE L2 -757 2557 1769 2499 117 11 16 chr6 176322171 176322548 -6092694 - THE1C LTR MaLR 0 375 1 379 170 18 98 chr6 176322641 176322753 -6092489 - MLT1B LTR MaLR -64 326 224 2443 82 0 0 chr6 176322776 176323082 -6092160 - AluY SINE Alu -5 306 1 314 302 121 9 chr6 176323135 176323251 -6091991 + L2 LINE L2 3144 3272 0 411 298 112 11 chr6 176324331 176324509 -6090733 + MIR SINE MIR 48 243 -19 311 193 81 50 chr6 176326413 176326574 -6088668 + L2 LINE L2 2581 2746 -568 440 265 90 0 chr6 176326574 176326740 -6088502 + L1MC5 LINE L1 7485 7665 -296 245 322 0 22 chr6 176327093 176327273 -6087969 + CT-rich Low_complexity Low_complexity 3 178 0 * 259 217 0 116 chr6 176327155 176327353 -6087889 + C-rich Low_complexity Low_complexity 6 180 0 266 328 0 17 chr6 176327448 176327628 -6087614 + CT-rich Low_complexity Low_complexity 3 179 0 266 283 106 60 chr6 176327950 176328233 -6087009 + L2 LINE L2 2977 3272 0 192 125 0 0 chr6 176328355 176328387 -6086855 + (TC)n Simple_repeat Simple_repeat 2 33 0 43 35 0 0 chr6 176329300 176329357 -6085885 + AT_rich Low_complexity Low_complexity 1 57 0 31 44 0 0 chr6 176329440 176329485 -6085757 + AT_rich Low_complexity Low_complexity 1 45 0 668 318 62 4 chr6 176329976 176330234 -6085008 + L3 LINE CR1 1177 1449 -128 241 275 82 41 chr6 176330390 176330561 -6084681 + MLT1J1 LTR MaLR 59 236 -210 257 159 32 63 chr6 176330650 176330713 -6084529 + MLT1J1 LTR MaLR 383 443 -3 417 320 156 0 chr6 176333350 176333575 -6081667 + MIR SINE MIR 3 262 0 185 347 48 0 chr6 176336661 176336785 -6078457 - MIR SINE MIR -26 236 107 209 179 161 0 chr6 176337813 176337869 -6077373 - L2 LINE L2 -25 3247 3183 378 232 18 0 chr6 176337990 176338080 -6077162 - MER45 DNA AcHobo -848 105 13 2566 82 33 14 chr6 176338359 176338727 -6076515 + THE1C LTR MaLR 1 375 0 2361 96 27 33 chr6 176338991 176339357 -6075885 + THE1B LTR MaLR 1 364 0 240 278 167 8 chr6 176339839 176339965 -6075277 + MIR SINE MIR 20 165 -97 885 160 41 41 chr6 176339969 176340163 -6075079 - MLT1B LTR MaLR -2 388 195 506 200 7 80 chr6 176340440 176340590 -6074652 + FAM SINE Alu 1 49 0 443 271 189 22 chr6 176340632 176340949 -6074293 - L2 LINE L2 0 3313 2944 1375 160 8 13 chr6 176341057 176341294 -6073948 - MER46A DNA MER2_type 0 236 1 1759 170 47 92 chr6 176341827 176342275 -6072967 - L1MA10 LINE L1 -11 6323 5896 225 345 55 0 chr6 176344100 176344245 -6070997 + MIR SINE MIR 53 205 -57 194 319 29 0 chr6 176344812 176344881 -6070361 - L2 LINE L2 -1 3271 3201 274 252 50 50 chr6 176345233 176345352 -6069890 - MIR SINE MIR -113 149 31 682 309 196 12 chr6 176345606 176346269 -6068973 + L3 LINE CR1 637 1421 -156 219 69 0 0 chr6 176346828 176346857 -6068385 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2185 130 42 33 chr6 176347794 176348155 -6067087 - THE1B LTR MaLR 0 364 1 246 323 71 0 chr6 176348311 176348466 -6066776 - MIR SINE MIR -35 227 62 1254 217 80 39 chr6 176348583 176348751 -6066491 + MLT1B LTR MaLR 10 170 -220 2380 64 3 61 chr6 176348751 176349078 -6066164 + AluY SINE Alu 1 308 -3 1254 217 80 39 chr6 176349078 176349273 -6065969 + MLT1B LTR MaLR 170 388 -2 890 130 13 13 chr6 176349364 176349518 -6065724 - L1MB4 LINE L1 0 6180 6027 484 270 193 26 chr6 176349703 176349945 -6065297 + L2 LINE L2 2827 3027 -286 1551 189 0 54 chr6 176349945 176350262 -6064980 - AluJb SINE Alu -2 310 11 484 270 193 26 chr6 176350262 176350434 -6064808 + L2 LINE L2 3027 3310 -3 3054 136 110 24 chr6 176351424 176352013 -6063229 - L1MA4 LINE L1 -1 6299 5660 914 192 31 36 chr6 176352013 176352206 -6063036 - AluJo SINE Alu -31 281 90 428 204 9 65 chr6 176352222 176352330 -6062912 - MLT1A1 LTR MaLR -261 104 3 4991 162 23 6 chr6 176352399 176353341 -6061901 - L1MA4 LINE L1 -1447 4699 3742 1213 195 68 22 chr6 176353434 176353720 -6061522 - MER45B DNA AcHobo -541 1040 736 1759 205 8 22 chr6 176353720 176354090 -6061152 - MLT1A1 LTR MaLR 0 365 1 1213 195 68 22 chr6 176354090 176354126 -6061116 - MER45B DNA AcHobo -845 736 703 2695 236 76 11 chr6 176354356 176355017 -6060225 - MER45B DNA AcHobo -312 728 25 1583 52 0 0 chr6 176357380 176357573 -6057669 + MLT2A1 LTR ERVL 1 193 -251 558 25 210 12 chr6 176357571 176357611 -6057631 + MLT2A1 LTR ERVL 348 379 -65 * 504 68 0 0 chr6 176357611 176357684 -6057558 + (TA)n Simple_repeat Simple_repeat 1 73 0 558 25 210 12 chr6 176357684 176357724 -6057518 + MLT2A1 LTR ERVL 379 444 0 3332 208 123 48 chr6 176358290 176359255 -6055987 + MER45B DNA AcHobo 3 1040 0 2171 112 0 0 chr6 176360915 176361209 -6054033 - AluSc SINE Alu -15 294 1 2892 7 0 0 chr6 176362880 176363186 -6052056 + AluYa5 SINE Alu 1 306 -5 1384 191 43 20 chr6 176363597 176363631 -6051611 + MER33 DNA MER1_type 1 24 -2561 1326 167 4 25 chr6 176363631 176363871 -6051371 + MER46A DNA MER2_type 2 236 0 1384 191 43 20 chr6 176363871 176364160 -6051082 + MER33 DNA MER1_type 24 323 -1 2019 154 3 0 chr6 176364902 176365213 -6050029 + AluSx SINE Alu 1 312 0 29 28 0 0 chr6 176365213 176365249 -6049993 + AT_rich Low_complexity Low_complexity 1 36 0 482 267 64 46 chr6 176365794 176365845 -6049397 + L1M4 LINE L1 4299 4348 -1798 234 91 0 0 chr6 176365845 176365878 -6049364 + (TG)n Simple_repeat Simple_repeat 2 34 0 482 267 64 46 chr6 176365878 176366107 -6049135 + L1M4 LINE L1 4348 4584 -1562 634 272 112 17 chr6 176366433 176366665 -6048577 - MIR SINE MIR 0 262 9 2497 88 3 0 chr6 176367109 176367416 -6047826 + AluSx SINE Alu 1 308 -4 301 319 108 6 chr6 176367800 176367957 -6047285 - MIR SINE MIR -18 244 72 188 282 129 12 chr6 176370669 176370754 -6044488 - MIR SINE MIR -50 212 118 2393 57 3 72 chr6 176371733 176372064 -6043178 + AluY SINE Alu 1 308 -3 2271 97 3 0 chr6 176372134 176372424 -6042818 + AluSg SINE Alu 1 291 -19 1930 258 113 20 chr6 176372733 176373513 -6041729 - L1ME3A LINE L1 -17 6153 5302 245 169 288 0 chr6 176373514 176373573 -6041669 - MER2 DNA MER2_type 0 345 270 2491 120 11 0 chr6 176373595 176373953 -6041289 + THE1B LTR MaLR 3 364 0 520 91 0 71 chr6 176373958 176374057 -6041185 - MER2 DNA MER2_type -135 210 119 * 914 173 13 0 chr6 176374056 176374206 -6041036 - MER2 DNA MER2_type -193 152 1 923 249 100 39 chr6 176374211 176374701 -6040541 - L1ME3A LINE L1 -846 5300 4781 2387 97 3 0 chr6 176375473 176375782 -6039460 + AluSx SINE Alu 1 310 -2 213 204 0 0 chr6 176376061 176376110 -6039132 + CT-rich Low_complexity Low_complexity 2 50 0 216 241 111 0 chr6 176378166 176378220 -6037022 + MIR SINE MIR 84 143 -119 370 381 90 0 chr6 176378396 176378619 -6036623 - MIR SINE MIR -5 257 15 2412 203 4 20 chr6 176380250 176380812 -6034430 - L1PB4 LINE L1 -1396 4750 4198 * 5388 158 17 25 chr6 176380808 176382212 -6033030 + L1PB4 LINE L1 4759 6155 -1 932 278 84 60 chr6 176382744 176383298 -6031944 - MER77 LTR ERV1 -41 564 54 2003 281 87 117 chr6 176383298 176384509 -6030733 - L2 LINE L2 -41 3272 2027 2972 85 3 8 chr6 176384509 176384885 -6030357 - THE1C LTR MaLR 0 375 2 11612 103 29 5 chr6 176384886 176386429 -6028813 - THE1C-int LTR MaLR 0 1580 1 2935 98 5 8 chr6 176386429 176386805 -6028437 - THE1C LTR MaLR 0 375 1 2003 281 87 117 chr6 176386805 176388408 -6026834 - L2 LINE L2 -1284 2029 527 4334 143 11 2 chr6 176389135 176389764 -6025478 + MER41B LTR ERV1 1 635 0 275 338 70 0 chr6 176389765 176389907 -6025335 + MER117 DNA MER1_type 2 153 -44 216 239 30 0 chr6 176389986 176390053 -6025189 - MIR SINE MIR -129 133 65 300 341 54 24 chr6 176390147 176390314 -6024928 + MIR3 SINE MIR 16 187 -21 251 270 87 40 chr6 176390604 176390730 -6024512 - MIR SINE MIR -67 195 64 388 269 0 0 chr6 176393308 176393401 -6021841 + MER5A DNA MER1_type 13 105 -84 1966 129 20 3 chr6 176394926 176395242 -6020000 - AluSx SINE Alu 0 312 2 22 0 0 0 chr6 176395800 176395822 -6019420 + AT_rich Low_complexity Low_complexity 1 22 0 2269 100 3 0 chr6 176396032 176396332 -6018910 - AluSx SINE Alu -11 301 1 316 276 141 19 chr6 176397039 176397195 -6018047 - L1MC4a LINE L1 -1883 5925 5751 310 326 122 6 chr6 176397382 176397554 -6017688 - MLT2F LTR ERVL -233 430 239 281 273 68 11 chr6 176397629 176397717 -6017525 - MLT2F LTR ERVL -527 136 44 2102 171 42 30 chr6 176397722 176398255 -6016987 + MLT2A2 LTR ERVL 9 554 0 1234 287 40 38 chr6 176398309 176398808 -6016434 - L1MC4a LINE L1 -2054 5754 5255 383 64 0 0 chr6 176398858 176398905 -6016337 + HY4 scRNA scRNA 1 47 -46 1594 150 44 29 chr6 176399123 176399396 -6015846 - THE1B LTR MaLR -87 277 1 948 279 86 35 chr6 176399409 176399896 -6015346 - LTR33 LTR ERVL 0 521 10 1880 35 9 13 chr6 176400139 176400365 -6014877 + AluY SINE Alu 81 305 -6 2496 80 0 0 chr6 176401017 176401328 -6013914 + AluY SINE Alu 1 311 0 180 356 0 0 chr6 176401483 176401542 -6013700 - L2 LINE L2 -996 2318 2260 883 242 25 17 chr6 176401815 176402207 -6013035 - L1M4 LINE L1 -2729 3417 2909 550 315 163 25 chr6 176402629 176403232 -6012010 + L2 LINE L2 1713 2398 -916 1476 182 51 20 chr6 176405878 176406220 -6009022 + MLT1A1 LTR MaLR 9 365 0 180 0 0 0 chr6 176406331 176406351 -6008891 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1646 94 0 0 chr6 176406361 176406574 -6008668 - AluSc SINE Alu -7 302 90 1170 126 0 23 chr6 176406574 176406749 -6008493 - AluSc SINE Alu -138 171 1 3648 151 59 2 chr6 176407273 176407849 -6007393 + MER4B LTR ERV1 1 609 -1 374 69 207 0 chr6 176408244 176408302 -6006940 + MER4B LTR ERV1 222 291 -319 2145 112 3 3 chr6 176408563 176408857 -6006385 - AluSp SINE Alu -17 296 3 183 369 27 0 chr6 176408880 176408991 -6006251 + L2 LINE L2 2551 2664 -650 275 290 85 85 chr6 176409333 176409389 -6005853 + L2 LINE L2 3074 3129 -143 3270 139 38 6 chr6 176409389 176409886 -6005356 - LTR64 LTR ERVK 0 513 1 275 290 85 85 chr6 176409886 176410005 -6005237 + L2 LINE L2 3128 3249 -23 2403 181 5 37 chr6 176412743 176413174 -6002068 - MER47B DNA MER2_type -1 417 1 1009 38 49 10 chr6 176413217 176413421 -6001821 + (TCTA)n Simple_repeat Simple_repeat 1 212 0 2214 105 7 13 chr6 176414663 176414969 -6000273 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr6 176415963 176415983 -5999259 + (T)n Simple_repeat Simple_repeat 1 20 0 351 354 16 16 chr6 176416186 176416313 -5998929 + L2 LINE L2 3138 3264 -8 269 258 0 34 chr6 176416847 176416936 -5998306 - HsTC2 DNA Tc2 -1797 101 16 231 204 177 18 chr6 176418275 176418388 -5996854 - L1ME4a LINE L1 -2 6119 5989 1774 167 7 13 chr6 176418718 176419017 -5996225 + AluJb SINE Alu 2 298 -14 2012 180 112 0 chr6 176420825 176421208 -5994034 - MSTB LTR MaLR 0 426 1 2328 100 0 10 chr6 176423003 176423313 -5991929 - AluSx SINE Alu -5 307 1 1291 114 235 31 chr6 176423574 176423829 -5991413 - AluSg1 SINE Alu -2 307 1 1645 150 48 34 chr6 176425756 176426049 -5989193 + AluJo SINE Alu 1 297 -15 279 0 0 0 chr6 176426085 176426116 -5989126 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 330 276 36 94 chr6 176426446 176426776 -5988466 + HAL1b LINE L1 174 484 -864 254 272 63 47 chr6 176427737 176427928 -5987314 + L1ME LINE L1 3380 3573 -2573 2639 55 0 0 chr6 176428022 176428331 -5986911 + AluY SINE Alu 1 309 -2 22 0 0 0 chr6 176428394 176428416 -5986826 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 176428569 176428608 -5986634 + AT_rich Low_complexity Low_complexity 1 39 0 295 320 119 51 chr6 176429664 176430192 -5985050 + L1ME LINE L1 5348 5604 -517 2358 148 34 14 chr6 176430245 176430602 -5984640 + THE1B LTR MaLR 1 364 0 12582 95 1 4 chr6 176430602 176432186 -5983056 + THE1B-int LTR MaLR 1 1580 0 2455 150 28 0 chr6 176432186 176432540 -5982702 + THE1B LTR MaLR 1 364 0 210 174 0 0 chr6 176432667 176432713 -5982529 + CT-rich Low_complexity Low_complexity 3 48 0 673 244 22 0 chr6 176433276 176433456 -5981786 - MER5A DNA MER1_type 0 189 6 199 349 81 47 chr6 176434364 176434599 -5980643 + L3 LINE CR1 1335 1577 0 24 0 0 0 chr6 176435789 176435813 -5979429 + AT_rich Low_complexity Low_complexity 1 24 0 197 327 167 0 chr6 176436839 176436989 -5978253 - L2 LINE L2 -1073 2241 2067 417 81 0 0 chr6 176437876 176437938 -5977304 + (CA)n Simple_repeat Simple_repeat 1 62 0 2509 177 17 11 chr6 176438163 176438627 -5976615 - MLT1C LTR MaLR 0 467 1 319 172 16 0 chr6 176438636 176438700 -5976542 - MLT1C-int LTR MaLR -9 1362 1298 674 311 182 10 chr6 176438705 176439200 -5976042 + MLT1G1 LTR MaLR 16 595 0 426 206 29 59 chr6 176439211 176439313 -5975929 + FRAM SINE Alu 71 169 -7 369 330 23 23 chr6 176439436 176439654 -5975588 + MLT1G1-int LTR MaLR 332 549 -822 306 288 89 20 chr6 176440400 176440546 -5974696 + MLT1G1-int LTR MaLR 1579 1734 -1 640 220 80 47 chr6 176440549 176440799 -5974443 + MLT1H1 LTR MaLR 3 290 -259 1894 104 40 22 chr6 176441892 176442170 -5973072 - AluSx SINE Alu -15 297 15 230 143 20 41 chr6 176443224 176443273 -5971969 + CT-rich Low_complexity Low_complexity 4 51 0 249 319 223 48 chr6 176443274 176443713 -5971529 + L2 LINE L2 2330 2845 -469 256 323 53 30 chr6 176443996 176444129 -5971113 - L2 LINE L2 -1 3271 3136 758 343 65 41 chr6 176444498 176445035 -5970207 - MLT1K LTR MaLR -26 562 13 351 284 32 0 chr6 176445054 176445149 -5970093 - L2 LINE L2 -249 3023 2926 183 80 0 0 chr6 176447996 176448021 -5967221 + (TAA)n Simple_repeat Simple_repeat 2 26 0 2243 165 34 3 chr6 176448405 176448757 -5966485 + MLT1A1 LTR MaLR 1 363 -2 220 283 50 0 chr6 176449361 176449421 -5965821 - L2 LINE L2 -9 3263 3201 21 36 0 0 chr6 176449971 176449999 -5965243 + AT_rich Low_complexity Low_complexity 1 28 0 857 307 71 40 chr6 176450095 176450649 -5964593 + L1ME3A LINE L1 5328 5912 -258 2414 128 45 25 chr6 176450649 176451048 -5964194 - MSTA LTR MaLR 0 428 22 3491 238 50 23 chr6 176451202 176452296 -5962946 - L1M4 LINE L1 -1281 4865 3742 30 0 0 0 chr6 176452306 176452336 -5962906 + AT_rich Low_complexity Low_complexity 1 30 0 322 275 46 0 chr6 176452878 176452987 -5962255 - L2 LINE L2 0 3313 3200 201 283 17 0 chr6 176454243 176454303 -5960939 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 226 191 21 0 chr6 176454598 176454645 -5960597 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr6 176455858 176455879 -5959363 + AT_rich Low_complexity Low_complexity 1 21 0 1914 139 11 0 chr6 176455944 176456225 -5959017 - AluJb SINE Alu -25 287 4 1032 253 111 10 chr6 176456226 176456742 -5958500 - MER97b DNA MER1_type? -286 608 4 2268 93 3 7 chr6 176458001 176458303 -5956939 - AluY SINE Alu -10 301 1 22 0 0 0 chr6 176459269 176459291 -5955951 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr6 176459321 176459346 -5955896 + AT_rich Low_complexity Low_complexity 1 25 0 310 335 13 6 chr6 176460015 176460173 -5955069 + L1MC/D LINE L1 5671 5829 -1979 282 265 118 108 chr6 176460325 176460604 -5954638 - MLT1J2 LTR MaLR -167 283 2 857 299 65 61 chr6 176463177 176463336 -5951906 - L1MEd LINE L1 -2256 3873 3716 1292 224 28 41 chr6 176463336 176463626 -5951616 + AluJo SINE Alu 3 288 -14 857 299 65 61 chr6 176463626 176464106 -5951136 - L1MEd LINE L1 -2413 3716 3226 1725 193 0 0 chr6 176464106 176464417 -5950825 - AluJo SINE Alu -1 311 1 857 299 65 61 chr6 176464417 176464748 -5950494 - L1MEd LINE L1 -2903 3226 2898 537 164 101 19 chr6 176464747 176464906 -5950336 - L1MC4 LINE L1 -400 7642 7471 * 744 258 22 76 chr6 176464895 176465237 -5950005 - L1MEd LINE L1 -4834 1255 971 366 267 133 81 chr6 176465281 176465678 -5949564 - MLT1H LTR MaLR -38 511 94 566 311 64 39 chr6 176465751 176466234 -5949008 - L1MEd LINE L1 -5168 951 457 1716 180 32 68 chr6 176466691 176466860 -5948382 + MLT1B LTR MaLR 1 174 -216 2255 113 3 0 chr6 176466860 176467169 -5948073 + AluY SINE Alu 1 310 -1 1716 180 32 68 chr6 176467169 176467399 -5947843 + MLT1B LTR MaLR 174 386 -4 2640 182 27 4 chr6 176467407 176468078 -5947164 + MLT1B-int LTR MaLR 1 895 -476 2571 109 31 11 chr6 176468128 176468485 -5946757 + THE1B LTR MaLR 1 364 0 395 327 0 0 chr6 176468489 176468593 -5946649 + MLT-int LTR MaLR 676 779 -956 * 2005 224 65 32 chr6 176468586 176469154 -5946088 + MLT1B-int LTR MaLR 1148 1734 -1 1791 209 50 16 chr6 176469155 176469532 -5945710 + MLT1B LTR MaLR 1 390 0 226 300 109 59 chr6 176469664 176470021 -5945221 + L2 LINE L2 2383 2757 -557 317 232 14 0 chr6 176470414 176470483 -5944759 + L2 LINE L2 3241 3310 -3 457 287 45 73 chr6 176470665 176470954 -5944288 + L2 LINE L2 3033 3313 0 210 254 0 0 chr6 176471588 176471655 -5943587 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1760 151 91 62 chr6 176471758 176472110 -5943132 - THE1B LTR MaLR -2 362 1 2118 126 0 0 chr6 176472166 176472452 -5942790 + AluSc SINE Alu 3 288 -21 1083 247 59 52 chr6 176472598 176473055 -5942187 + MLT1B LTR MaLR 8 467 0 3659 80 9 0 chr6 176474015 176474464 -5940778 + MLT2A2 LTR ERVL 1 453 0 204 384 56 8 chr6 176474763 176474888 -5940354 + MIR SINE MIR 20 150 -112 364 343 150 0 chr6 176475095 176475375 -5939867 + L2 LINE L2 355 676 -2638 940 292 29 55 chr6 176475641 176475948 -5939294 + L2 LINE L2 2046 2339 -975 2115 165 27 14 chr6 176475948 176476318 -5938924 - THE1C LTR MaLR 0 375 1 940 292 29 55 chr6 176476318 176476465 -5938777 + L2 LINE L2 2339 2488 -826 514 252 19 0 chr6 176476465 176476572 -5938670 - MER81 DNA DNA 0 114 6 296 320 68 14 chr6 176476610 176476757 -5938485 + L2 LINE L2 2525 2679 -635 1002 302 43 36 chr6 176476758 176477178 -5938064 + L2 LINE L2 2874 3296 -17 264 149 0 0 chr6 176478569 176478616 -5936626 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 188 328 66 0 chr6 176478830 176478891 -5936351 - L2 LINE L2 0 3272 3208 237 360 129 6 chr6 176479214 176479392 -5935850 - MIR SINE MIR -46 216 17 3048 115 8 68 chr6 176480254 176480902 -5934340 + MER4B LTR ERV1 1 779 0 2803 110 12 0 chr6 176480976 176481371 -5933871 + MLT2A2 LTR ERVL 1 403 -50 261 0 0 0 chr6 176481371 176481400 -5933842 + (TG)n Simple_repeat Simple_repeat 2 30 0 2803 110 12 0 chr6 176481400 176481412 -5933830 + MLT2A2 LTR ERVL 403 413 -40 181 153 57 32 chr6 176481420 176481544 -5933698 + (TA)n Simple_repeat Simple_repeat 1 127 0 333 0 0 0 chr6 176481565 176481602 -5933640 + (TG)n Simple_repeat Simple_repeat 2 38 0 340 78 0 0 chr6 176481602 176481643 -5933599 + MLT2A2 LTR ERVL 409 452 -1 24 0 0 0 chr6 176485827 176485851 -5929391 + AT_rich Low_complexity Low_complexity 1 24 0 2139 78 4 0 chr6 176485852 176486123 -5929119 + AluY SINE Alu 1 272 -39 577 268 81 12 chr6 176486124 176486370 -5928872 + MER63C DNA MER1_type 173 435 -495 1348 267 53 21 chr6 176486834 176487404 -5927838 + MER63 DNA MER1_type 438 1025 -36 2169 127 16 3 chr6 176488491 176488798 -5926444 + AluSq SINE Alu 1 311 -2 1747 234 7 38 chr6 176489040 176489189 -5926053 - MER74A LTR ERVL -26 532 380 2115 120 0 0 chr6 176489189 176489539 -5925703 + AluSq SINE Alu 2 351 0 1747 234 7 38 chr6 176489539 176489812 -5925430 - MER74A LTR ERVL -178 380 122 4171 180 17 51 chr6 176491033 176491125 -5924117 - L1MA9 LINE L1 -33 6279 6185 6934 146 38 23 chr6 176491125 176491709 -5923533 + HSMAR2 DNA Mariner 2 576 -726 2521 57 0 0 chr6 176491709 176492005 -5923237 - AluY SINE Alu -15 296 1 6934 146 38 23 chr6 176492005 176492701 -5922541 + HSMAR2 DNA Mariner 576 1300 -2 4171 180 17 51 chr6 176492701 176493668 -5921574 - L1MA9 LINE L1 -127 6185 5256 24 32 0 0 chr6 176495866 176495897 -5919345 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 176496341 176496364 -5918878 + AT_rich Low_complexity Low_complexity 1 23 0 374 308 60 19 chr6 176497402 176497561 -5917681 + MIR SINE MIR 42 205 -57 1064 177 80 0 chr6 176498603 176498829 -5916413 + L1MC3 LINE L1 6244 6487 -1298 4216 205 44 16 chr6 176498924 176500054 -5915188 + L1MC2 LINE L1 5023 6196 -148 2198 111 73 14 chr6 176500054 176500398 -5914844 - THE1B LTR MaLR 0 364 1 4216 205 44 16 chr6 176500398 176500547 -5914695 + L1MC2 LINE L1 6196 6339 -5 2781 188 52 17 chr6 176500550 176501204 -5914038 + L1MC3 LINE L1 5893 6569 -1216 347 317 106 0 chr6 176501387 176501548 -5913694 + MIR SINE MIR 85 262 0 584 288 71 66 chr6 176501834 176502241 -5913001 + MLT1J1 LTR MaLR 34 442 -4 2341 213 33 6 chr6 176502393 176502942 -5912300 + L1MC2 LINE L1 5425 5988 -356 1034 274 111 5 chr6 176503965 176504344 -5910898 + MLT2E LTR ERVL 2 420 -208 1599 153 86 47 chr6 176504730 176505090 -5910152 + MLT1A2 LTR MaLR 1 374 0 954 215 83 0 chr6 176505311 176505516 -5909726 + MER58A DNA MER1_type 2 223 -1 924 245 37 0 chr6 176505567 176505840 -5909402 - L1MCc LINE L1 -6123 300 18 189 0 0 0 chr6 176507017 176507038 -5908204 + (T)n Simple_repeat Simple_repeat 1 21 0 2113 132 6 15 chr6 176507133 176507397 -5907845 + MER1B DNA MER1_type 2 264 -2448 2392 135 6 3 chr6 176507397 176507760 -5907482 + THE1B LTR MaLR 1 364 0 2113 132 6 15 chr6 176507760 176507836 -5907406 + MER1B DNA MER1_type 264 339 0 265 277 204 13 chr6 176508369 176508604 -5906638 - L1ME LINE L1 -335 5818 5539 312 258 31 10 chr6 176508661 176508758 -5906484 - L1ME LINE L1 -786 5361 5263 252 273 13 13 chr6 176508758 176508835 -5906407 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 247 284 74 30 chr6 176508835 176509134 -5906108 - L1ME LINE L1 -874 5255 4944 361 279 130 11 chr6 176509363 176509632 -5905610 - L1ME LINE L1 -1443 4686 4386 479 317 108 50 chr6 176509674 176510124 -5905118 - L1ME LINE L1 -3439 2690 2268 1344 144 156 72 chr6 176510124 176510470 -5904772 + THE1C LTR MaLR 1 375 0 9168 121 56 39 chr6 176510473 176512021 -5903221 + THE1C-int LTR MaLR 4 1578 -2 2413 131 16 11 chr6 176512023 176512396 -5902846 + THE1C LTR MaLR 1 375 0 479 317 108 50 chr6 176512396 176512483 -5902759 - L1ME LINE L1 -3862 2267 2114 23 0 0 53 chr6 176512483 176512500 -5902742 + AT_rich Low_complexity Low_complexity 1 17 -19 1826 163 14 14 chr6 176512500 176512789 -5902453 + AluSx SINE Alu 1 289 -23 23 0 0 53 chr6 176512789 176512809 -5902433 + AT_rich Low_complexity Low_complexity 17 36 0 419 167 19 162 chr6 176513513 176513729 -5901513 + MER53 DNA DNA 1 185 -4 345 325 0 0 chr6 176513810 176513924 -5901318 - L1ME LINE L1 -5444 675 562 286 241 26 103 chr6 176514039 176514155 -5901087 + L2 LINE L2 2284 2390 -924 2311 287 88 38 chr6 176514431 176515417 -5899825 + L2 LINE L2 1907 2942 -372 582 307 94 44 chr6 176515601 176515726 -5899516 + L2 LINE L2 2933 3050 -263 2516 93 0 0 chr6 176515726 176516038 -5899204 - AluSx SINE Alu 0 312 1 582 307 94 44 chr6 176516038 176516274 -5898968 + L2 LINE L2 3050 3312 -1 2653 40 0 0 chr6 176518335 176518638 -5896604 - AluY SINE Alu -8 303 1 287 301 0 19 chr6 176518813 176518916 -5896326 + MIR SINE MIR 76 176 -86 1684 201 3 6 chr6 176520024 176520337 -5894905 + AluJo SINE Alu 1 312 0 1065 90 11 6 chr6 176520356 176520534 -5894708 + (GAA)n Simple_repeat Simple_repeat 2 180 0 328 321 64 21 chr6 176522510 176522697 -5892545 + L1M4 LINE L1 2112 2306 -3840 22 0 0 0 chr6 176522960 176522982 -5892260 + AT_rich Low_complexity Low_complexity 1 22 0 625 292 29 13 chr6 176523102 176523546 -5891696 - MLT1G1 LTR MaLR -35 560 7 4038 41 2 0 chr6 176523958 176524443 -5890799 - L1PA5 LINE L1 -1 6153 5668 252 192 14 82 chr6 176524844 176524917 -5890325 + MLT1B LTR MaLR 1 68 -322 1022 183 174 33 chr6 176524922 176525229 -5890013 + MLT1A1 LTR MaLR 5 396 0 * 1533 142 21 77 chr6 176525229 176525564 -5889678 + MLT1B LTR MaLR 65 380 -10 877 251 161 39 chr6 176526103 176526589 -5888653 - MLT1H LTR MaLR -4 545 1 297 0 0 0 chr6 176526642 176526675 -5888567 + (ATG)n Simple_repeat Simple_repeat 2 34 0 1993 110 14 0 chr6 176526686 176526967 -5888275 - AluSp SINE Alu -28 285 1 255 97 32 16 chr6 176527842 176527904 -5887338 + A-rich Low_complexity Low_complexity 4 66 0 199 321 62 0 chr6 176528227 176528339 -5886903 - MIR SINE MIR -50 212 94 698 314 37 12 chr6 176528372 176528617 -5886625 + MIR SINE MIR 11 261 -1 298 227 0 27 chr6 176529011 176529086 -5886156 + Charlie8 DNA MER1_type 2340 2412 -5 306 0 0 0 chr6 176529605 176529639 -5885603 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 360 315 9 9 chr6 176530406 176530514 -5884728 - L2 LINE L2 0 3313 3206 484 239 43 38 chr6 176530540 176530724 -5884518 + MER58A DNA MER1_type 38 222 -2 187 377 33 64 chr6 176530741 176531021 -5884221 + L2 LINE L2 2905 3175 -97 1986 121 70 14 chr6 176531021 176531376 -5883866 + THE1C LTR MaLR 1 375 0 187 377 33 64 chr6 176531376 176531424 -5883818 + L2 LINE L2 3175 3223 -49 2133 140 43 5 chr6 176531599 176531971 -5883271 + MER57A LTR ERV1 1 386 -17 183 85 64 0 chr6 176531973 176532020 -5883222 + (TA)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr6 176532179 176532204 -5883038 + AT_rich Low_complexity Low_complexity 1 25 0 718 193 0 15 chr6 176533047 176533182 -5882060 - FLAM_C SINE Alu 0 133 1 1758 150 88 53 chr6 176533418 176533870 -5881372 + LTR12 LTR ERV1 1 481 -233 1424 231 50 41 chr6 176534027 176534415 -5880827 + MLT1C LTR MaLR 1 395 -72 2130 140 3 0 chr6 176534415 176534707 -5880535 - AluSx SINE Alu -19 293 1 1424 231 50 41 chr6 176534707 176534781 -5880461 + MLT1C LTR MaLR 395 467 0 371 286 118 10 chr6 176534806 176535009 -5880233 + LTR33 LTR ERVL 1 225 -296 533 197 92 7 chr6 176535028 176535170 -5880072 - MER105 DNA DNA -27 177 24 781 297 19 84 chr6 176536282 176536699 -5878543 + L2 LINE L2 2920 3309 -4 2310 118 0 0 chr6 176536840 176537153 -5878089 + AluSp SINE Alu 1 313 0 387 293 13 0 chr6 176537625 176537775 -5877467 + (TA)n Simple_repeat Simple_repeat 2 153 0 2466 82 0 0 chr6 176537791 176538096 -5877146 - AluSq SINE Alu -7 306 2 23 0 0 0 chr6 176538462 176538485 -5876757 + AT_rich Low_complexity Low_complexity 1 23 0 363 44 0 0 chr6 176538965 176539010 -5876232 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1104 249 78 74 chr6 176539086 176539551 -5875691 + MER45R DNA AcHobo 8 477 -1104 2040 131 14 0 chr6 176539551 176539841 -5875401 + AluSc SINE Alu 1 294 -15 1104 249 78 74 chr6 176539841 176539914 -5875328 + MER45R DNA AcHobo 477 548 -1033 4121 228 25 66 chr6 176539928 176541351 -5873891 + L1MB7 LINE L1 2 1366 -5176 7386 231 96 21 chr6 176541480 176544353 -5870889 + L1MB7 LINE L1 2514 5769 -913 2360 74 3 23 chr6 176544353 176544662 -5870580 + AluY SINE Alu 1 303 -8 7386 231 96 21 chr6 176544662 176545631 -5869611 + L1MB7 LINE L1 5769 6664 -18 1239 151 22 0 chr6 176545631 176545863 -5869379 + MER45R DNA AcHobo 555 791 -790 2418 184 20 18 chr6 176545876 176546425 -5868817 + MER45R DNA AcHobo 674 1223 -358 1321 176 94 9 chr6 176546703 176547022 -5868220 + MER45R DNA AcHobo 1236 1581 0 293 264 137 65 chr6 176547255 176547440 -5867802 + MER20 DNA MER1_type 1 200 -19 2480 181 58 2 chr6 176547477 176547924 -5867318 - MER70A LTR ERVL 0 472 1 25 31 0 0 chr6 176548701 176548733 -5866509 + AT_rich Low_complexity Low_complexity 1 32 0 210 158 0 0 chr6 176549511 176549549 -5865693 + (TATG)n Simple_repeat Simple_repeat 3 40 0 582 282 16 37 chr6 176549656 176549844 -5865398 - MIR SINE MIR -73 189 6 884 272 90 0 chr6 176549940 176550219 -5865023 - LTR40b LTR ERVL -38 424 121 3152 164 95 1 chr6 176550243 176550914 -5864328 - L1MA8 LINE L1 -8 6283 5550 188 86 29 0 chr6 176551245 176551280 -5863962 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 1399 97 5 0 chr6 176551397 176551604 -5863638 - L1M1 LINE L1 -496 5806 5599 2386 99 0 0 chr6 176553892 176554194 -5861048 - AluSg SINE Alu -8 302 1 479 306 108 35 chr6 176555022 176555388 -5859854 - L1MC/D LINE L1 -303 5818 5417 1676 197 0 13 chr6 176555388 176555687 -5859555 - AluJo SINE Alu -17 295 1 479 306 108 35 chr6 176555687 176555735 -5859507 - L1MC/D LINE L1 -704 5417 5374 1238 153 44 101 chr6 176555800 176555837 -5859405 - L1MA9 LINE L1 -39 6273 6235 402 115 0 0 chr6 176555837 176555898 -5859344 + (TA)n Simple_repeat Simple_repeat 2 62 0 1238 153 44 101 chr6 176555898 176556245 -5858997 - L1MA9 LINE L1 -77 6235 5911 275 193 48 24 chr6 176556286 176556369 -5858873 + L1M3 LINE L1 5716 5800 -534 401 0 20 0 chr6 176556384 176556433 -5858809 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 425 171 0 23 chr6 176556455 176556500 -5858742 - L1MA9 LINE L1 -445 5867 5823 2227 122 0 3 chr6 176556500 176556804 -5858438 - AluSp SINE Alu -10 303 1 425 171 0 23 chr6 176556804 176556846 -5858396 - L1MA9 LINE L1 -489 5823 5782 259 269 34 20 chr6 176556927 176557076 -5858166 + (TA)n Simple_repeat Simple_repeat 2 152 0 513 287 116 58 chr6 176557131 176557476 -5857766 - L2 LINE L2 0 3313 2949 222 319 0 0 chr6 176557479 176557548 -5857694 - L2 LINE L2 -508 2806 2738 1816 163 0 3 chr6 176557927 176558209 -5857033 - AluJo SINE Alu -31 281 1 229 218 121 16 chr6 176558312 176558436 -5856806 - L1ME4a LINE L1 -1 6120 5984 270 0 0 0 chr6 176560137 176560167 -5855075 + (A)n Simple_repeat Simple_repeat 1 30 0 28 99 0 0 chr6 176561271 176561362 -5853880 + AT_rich Low_complexity Low_complexity 1 91 0 589 279 115 59 chr6 176561499 176561786 -5853456 + MLT1G1 LTR MaLR 1 303 -292 210 242 0 0 chr6 176561865 176561931 -5853311 + (TA)n Simple_repeat Simple_repeat 1 66 0 2196 122 3 25 chr6 176562025 176562344 -5852898 + AluSx SINE Alu 1 312 0 22 35 0 0 chr6 176562418 176562447 -5852795 + AT_rich Low_complexity Low_complexity 1 29 0 315 296 0 8 chr6 176562545 176562670 -5852572 + L1ME4a LINE L1 5979 6102 -19 22 0 0 0 chr6 176563153 176563175 -5852067 + AT_rich Low_complexity Low_complexity 1 22 0 219 307 70 44 chr6 176564425 176564539 -5850703 + MER5B DNA MER1_type 1 117 -61 695 301 81 55 chr6 176564996 176565893 -5849349 + L1MC/D LINE L1 730 1731 -4579 275 71 24 0 chr6 176565924 176565966 -5849276 + (TG)n Simple_repeat Simple_repeat 2 44 0 248 307 59 72 chr6 176566014 176566502 -5848740 + L1MC/D LINE L1 3696 4177 -1952 570 288 77 44 chr6 176566595 176566906 -5848336 + L1MC/D LINE L1 4730 5029 -1100 1397 220 54 11 chr6 176566906 176567256 -5847986 + MLT1A1 LTR MaLR 1 365 0 570 288 77 44 chr6 176567256 176567538 -5847704 + L1MC/D LINE L1 5029 5343 -786 316 253 0 0 chr6 176567544 176567639 -5847603 + L1MC/D LINE L1 5355 5449 -2342 244 284 95 29 chr6 176567742 176568048 -5847194 - L1M4 LINE L1 -1555 4591 4266 283 222 28 0 chr6 176568090 176568162 -5847080 + MLT1A2 LTR MaLR 33 106 -268 556 192 32 0 chr6 176568210 176568335 -5846907 + Charlie5 DNA MER1_type 2327 2455 -157 4056 119 26 2 chr6 176569542 176570162 -5845080 + MER41B LTR ERV1 1 635 0 2879 71 95 2 chr6 176570498 176570908 -5844334 - LTR7 LTR ERV1 -2 448 1 2200 101 48 13 chr6 176570908 176571285 -5843957 - HERVH LTR ERV1 0 7713 7324 1250 122 38 5 chr6 176571285 176571498 -5843744 - HERVH LTR ERV1 -1894 5819 5600 4091 141 1 1 chr6 176571499 176572161 -5843081 - HERVH LTR ERV1 -2564 5149 4488 3267 97 4 6 chr6 176572161 176572658 -5842584 - HERVH LTR ERV1 -3718 3995 3500 811 149 20 0 chr6 176572657 176572805 -5842437 - HERVH LTR ERV1 -4423 3290 3140 * 1916 118 0 12 chr6 176572799 176573121 -5842121 - HERVH LTR ERV1 -4726 2987 2670 10912 90 8 29 chr6 176573225 176574978 -5840264 - HERVH LTR ERV1 -5387 2326 611 4708 99 22 32 chr6 176574983 176575856 -5839386 - HERVH LTR ERV1 -6942 771 1 2820 73 98 2 chr6 176575858 176576267 -5838975 - LTR7 LTR ERV1 -2 448 1 273 290 130 0 chr6 176576599 176576737 -5838505 - MER103 DNA DNA -9 157 2 3343 117 2 4 chr6 176577252 176577775 -5837467 - MER41B LTR ERV1 0 635 114 204 310 169 51 chr6 176579428 176579661 -5835581 - L2 LINE L2 -441 2873 2669 327 65 0 0 chr6 176579661 176579707 -5835535 + (CA)n Simple_repeat Simple_repeat 1 46 0 204 310 169 51 chr6 176579707 176579886 -5835356 - L2 LINE L2 -645 2669 2412 559 300 49 64 chr6 176581181 176581728 -5833514 - L1MC4 LINE L1 -786 7256 6718 246 233 33 0 chr6 176581970 176582030 -5833212 - L1MC4 LINE L1 -201 7841 7780 653 212 0 20 chr6 176582103 176582254 -5832988 + L1MC4a LINE L1 3899 4046 -2100 351 269 77 33 chr6 176582264 176582446 -5832796 + L1MC4a LINE L1 5640 5829 -1979 25 0 0 0 chr6 176583024 176583049 -5832193 + AT_rich Low_complexity Low_complexity 1 25 0 203 379 87 12 chr6 176583172 176583333 -5831909 - MIR SINE MIR -34 228 56 732 256 105 46 chr6 176583334 176583891 -5831351 - L1ME LINE L1 -358 5804 5215 4448 130 27 2 chr6 176584239 176585896 -5829346 - L1PA16 LINE L1 -1 6868 5151 328 224 61 0 chr6 176585899 176585997 -5829245 + L1 LINE L1 4362 4465 -1681 219 140 0 0 chr6 176586201 176586251 -5828991 + (G)n Simple_repeat Simple_repeat 1 50 0 248 211 19 19 chr6 176586430 176586482 -5828760 - AluJ/monomer SINE Alu -247 52 1 8308 246 36 11 chr6 176586579 176589428 -5825814 - L1PA16 LINE L1 -2028 4821 1879 279 0 0 0 chr6 176589658 176589689 -5825553 + (TA)n Simple_repeat Simple_repeat 2 32 0 313 213 40 53 chr6 176590771 176590846 -5824396 - LTR28 LTR ERV1 -42 978 905 946 239 107 45 chr6 176590929 176591370 -5823872 - LTR1B LTR ERV1 -328 498 50 1189 273 21 0 chr6 176591695 176592028 -5823214 + MER58B DNA MER1_type 2 341 0 264 333 47 8 chr6 176592300 176592429 -5822813 + MIR3 SINE MIR 74 207 -1 204 389 0 11 chr6 176593469 176593559 -5821683 - L3b LINE CR1 -116 1467 1379 459 285 48 59 chr6 176594358 176594544 -5820698 + L1MEc LINE L1 198 381 -6015 842 274 48 0 chr6 176594548 176594796 -5820446 + L1MEc LINE L1 433 692 -5704 328 233 0 10 chr6 176594841 176594944 -5820298 + L1MEc LINE L1 996 1097 -5299 4314 254 37 21 chr6 176595087 176595166 -5820076 + L1MEc LINE L1 2325 2401 -3814 2686 29 3 0 chr6 176595166 176595474 -5819768 + AluY SINE Alu 1 309 -2 4314 254 37 21 chr6 176595474 176596979 -5818263 + L1MEc LINE L1 2401 3934 -2281 1853 241 76 31 chr6 176596979 176597435 -5817807 - MLT1E2 LTR MaLR 0 626 154 2281 92 0 0 chr6 176597435 176597727 -5817515 - AluSc SINE Alu -17 292 1 1853 241 76 31 chr6 176597727 176597888 -5817354 - MLT1E2 LTR MaLR -472 154 2 1331 244 53 95 chr6 176597888 176598029 -5817213 + L1MEc LINE L1 3931 4076 -2139 2912 6 0 0 chr6 176598029 176598344 -5816898 + AluYb8 SINE Alu 1 315 -3 1331 244 53 95 chr6 176598344 176598393 -5816849 + L1MEc LINE L1 4076 4126 -2089 1680 181 77 37 chr6 176598393 176598768 -5816474 + MLT1B LTR MaLR 1 390 0 1331 244 53 95 chr6 176598768 176599256 -5815986 + L1MEc LINE L1 4126 4565 -1650 180 77 0 0 chr6 176599256 176599282 -5815960 + (TG)n Simple_repeat Simple_repeat 2 27 0 1331 244 53 95 chr6 176599282 176599508 -5815734 + L1MEc LINE L1 4565 4799 -1416 527 274 121 63 chr6 176599591 176600036 -5815206 - MLT1H LTR MaLR 0 549 79 262 407 0 0 chr6 176600315 176600396 -5814846 + LTR67 LTR ERVL 114 194 -363 464 289 99 0 chr6 176600517 176600659 -5814583 + LTR67 LTR ERVL 322 477 -80 1214 246 62 51 chr6 176600823 176601043 -5814199 - LTR16A1 LTR ERVL 0 457 241 463 279 9 0 chr6 176601043 176601154 -5814088 - MER81 DNA DNA 0 114 3 1214 246 62 51 chr6 176601154 176601381 -5813861 - LTR16A1 LTR ERVL -216 241 5 3214 114 12 35 chr6 176601402 176601823 -5813419 + MER75 DNA T2_type 1 409 -105 2014 145 7 0 chr6 176601823 176602119 -5813123 + AluSx SINE Alu 1 298 -14 3214 114 12 35 chr6 176602119 176602213 -5813029 + MER75 DNA T2_type 409 504 -10 650 221 34 93 chr6 176602523 176602727 -5812515 + LTR16A1 LTR ERVL 19 210 -247 189 282 77 60 chr6 176602948 176603065 -5812177 + L2 LINE L2 3192 3310 -3 347 364 8 53 chr6 176603418 176603665 -5811577 + MIR SINE MIR 2 237 -25 197 273 18 0 chr6 176603785 176603840 -5811402 + L3b LINE CR1 1277 1332 -251 1205 209 114 33 chr6 176603982 176604385 -5810857 + MER39 LTR ERV1 265 585 0 364 278 88 4 chr6 176604498 176604725 -5810517 - HAL1b LINE L1 -26 1322 1077 212 57 0 29 chr6 176604968 176605003 -5810239 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 285 256 51 58 chr6 176605005 176605161 -5810081 - HAL1b LINE L1 -635 713 559 28 0 0 0 chr6 176605667 176605695 -5809547 + AT_rich Low_complexity Low_complexity 1 28 0 3790 201 55 10 chr6 176605765 176606635 -5808607 - Charlie1a DNA MER1_type -528 927 19 287 231 11 44 chr6 176608166 176608257 -5806985 - MER34 LTR ERV1 -2 540 453 1481 179 63 71 chr6 176608311 176608690 -5806552 - MER34B LTR ERV1 -185 380 5 250 318 259 0 chr6 176610112 176610301 -5804941 - MIR SINE MIR -20 242 5 217 289 19 0 chr6 176611805 176611857 -5803385 - L2 LINE L2 -19 3294 3242 481 299 58 0 chr6 176611933 176612031 -5803211 - AluJo SINE Alu -80 232 120 1976 122 7 0 chr6 176612031 176612310 -5802932 - AluSx SINE Alu -10 302 22 481 299 58 0 chr6 176612310 176612365 -5802877 - AluJo SINE Alu -192 120 70 896 293 83 45 chr6 176612396 176613072 -5802170 - L1MCa LINE L1 -4530 2592 1670 1163 153 5 0 chr6 176613072 176613268 -5801974 - L1PB3 LINE L1 -2 6152 5956 896 293 83 45 chr6 176613268 176613382 -5801860 - L1MCa LINE L1 -5452 1670 1562 1424 211 119 53 chr6 176613385 176613839 -5801403 + MLT1D LTR MaLR 1 484 -21 1333 260 91 32 chr6 176613841 176614460 -5800782 - L1MCa LINE L1 -4962 1461 807 621 323 86 15 chr6 176614653 176615062 -5800180 - L1MCa LINE L1 -5926 497 60 317 139 61 43 chr6 176615067 176615182 -5800060 + (TATAA)n Simple_repeat Simple_repeat 3 119 0 23 33 0 0 chr6 176616576 176616606 -5798636 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr6 176616804 176616828 -5798414 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 176617004 176617033 -5798209 + AT_rich Low_complexity Low_complexity 1 29 0 242 330 98 15 chr6 176617295 176617498 -5797744 - L1ME LINE L1 -260 5893 5674 343 312 64 42 chr6 176617503 176617955 -5797287 - L1ME LINE L1 -864 5265 4804 312 295 80 40 chr6 176619106 176619330 -5795912 - L1ME LINE L1 -3987 2142 1910 486 296 91 80 chr6 176619518 176620184 -5795058 - L1MEc LINE L1 -4457 1672 804 23 0 0 0 chr6 176620236 176620259 -5794983 + AT_rich Low_complexity Low_complexity 1 23 0 329 321 138 62 chr6 176620321 176620822 -5794420 - L1MEc LINE L1 -5477 642 104 231 271 83 78 chr6 176621345 176621432 -5793810 - MIR SINE MIR -12 250 165 2655 35 0 3 chr6 176621432 176621744 -5793498 - AluY SINE Alu 0 311 1 231 271 83 78 chr6 176621744 176621848 -5793394 - MIR SINE MIR -97 165 58 4485 264 55 29 chr6 176622502 176623914 -5791328 - L1ME1 LINE L1 -5 6956 5582 1951 152 3 0 chr6 176623914 176624211 -5791031 - AluSx SINE Alu -14 298 1 4485 264 55 29 chr6 176624211 176625600 -5789642 - L1ME1 LINE L1 -1379 5582 4084 1689 288 59 34 chr6 176625604 176626235 -5789007 - L1ME1 LINE L1 -3577 3364 2750 2556 44 0 0 chr6 176626235 176626533 -5788709 - AluY SINE Alu -12 299 2 1689 288 59 34 chr6 176626533 176627530 -5787712 - L1ME1 LINE L1 -4191 2750 1556 243 326 87 64 chr6 176627595 176628206 -5787036 - L1ME1 LINE L1 -5445 978 354 885 196 69 25 chr6 176628243 176628488 -5786754 - L1ME1 LINE L1 -6150 273 18 746 143 0 109 chr6 176629079 176629226 -5786016 + FLAM_A SINE Alu 1 131 -2 26 30 0 0 chr6 176629985 176630018 -5785224 + AT_rich Low_complexity Low_complexity 1 33 0 241 215 15 0 chr6 176630691 176630756 -5784486 - L1MC4a LINE L1 -2 7806 7741 * 2720 267 101 42 chr6 176630755 176633433 -5781809 - L1MC/D LINE L1 -763 5759 3015 1968 202 16 45 chr6 176633448 176633893 -5781349 - MER73 LTR ERVL -161 483 52 974 253 95 52 chr6 176633893 176634079 -5781163 - L1MCa LINE L1 -3436 2990 2813 1811 174 10 3 chr6 176634079 176634384 -5780858 - AluJb SINE Alu -3 309 3 974 253 95 52 chr6 176634384 176635386 -5779856 - L1MCa LINE L1 -3613 2813 1583 2556 71 0 0 chr6 176635386 176635696 -5779546 - AluY SINE Alu -1 310 1 974 253 95 52 chr6 176635696 176635961 -5779281 - L1MCa LINE L1 -4843 1583 1331 285 29 0 0 chr6 176635968 176636002 -5779240 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 518 302 53 29 chr6 176636002 176636247 -5778995 - L1MCc LINE L1 -4159 2979 2729 254 73 24 0 chr6 176636252 176636293 -5778949 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 374 270 63 36 chr6 176636303 176636466 -5778776 - L1MCc LINE L1 -4985 1962 1795 3262 167 26 26 chr6 176636468 176637079 -5778163 - MER73 LTR ERVL 0 644 34 928 251 49 42 chr6 176637119 176637596 -5777646 - L1MCc LINE L1 -4887 1552 1153 1032 331 114 9 chr6 176637655 176638084 -5777158 - L1MCc LINE L1 -6288 571 98 201 74 0 0 chr6 176638084 176638111 -5777131 + (TG)n Simple_repeat Simple_repeat 2 28 0 454 307 129 65 chr6 176638195 176638716 -5776526 - HAL1 LINE L1 -1817 690 137 22 35 0 0 chr6 176638842 176638871 -5776371 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr6 176639039 176639092 -5776150 + AT_rich Low_complexity Low_complexity 1 53 0 206 293 89 49 chr6 176640014 176640137 -5775105 - MIR3 SINE MIR 0 208 81 221 264 77 22 chr6 176641538 176641629 -5773613 - L2 LINE L2 -15 3257 3162 181 339 32 0 chr6 176642263 176642325 -5772917 - L2 LINE L2 -51 3262 3199 755 271 71 40 chr6 176643528 176644033 -5771209 - MER113 DNA MER1_type? 0 521 1 240 357 16 39 chr6 176645258 176645387 -5769855 + L2 LINE L2 2266 2391 -923 244 318 171 8 chr6 176646193 176646322 -5768920 + L2 LINE L2 3102 3251 -21 385 284 115 7 chr6 176646440 176646588 -5768654 - MER58A DNA MER1_type 0 166 3 405 121 0 0 chr6 176646630 176646696 -5768546 - L1MA9 LINE L1 -8 6304 6239 253 323 0 0 chr6 176649224 176649286 -5765956 + L2 LINE L2 3210 3271 -1 1871 67 32 0 chr6 176650330 176650583 -5764659 - L1PA8 LINE L1 -11 6161 5901 185 301 24 48 chr6 176651474 176651557 -5763685 - L2 LINE L2 -844 2470 2390 198 275 25 25 chr6 176651686 176651766 -5763476 + L2 LINE L2 1630 1709 -1605 793 328 129 39 chr6 176651843 176652672 -5762570 + L2 LINE L2 1726 2629 -685 1765 155 160 19 chr6 176652915 176653290 -5761952 + MSTA LTR MaLR 1 428 0 8772 149 15 45 chr6 176653294 176654732 -5760510 + MSTA-int LTR MaLR 5 1390 -190 2462 74 0 0 chr6 176654732 176655028 -5760214 - AluY SINE Alu -15 296 1 8772 149 15 45 chr6 176655028 176655214 -5760028 + MSTA-int LTR MaLR 1390 1580 0 943 184 197 13 chr6 176655214 176655393 -5759849 + MSTA LTR MaLR 1 236 -192 324 0 0 0 chr6 176655393 176655429 -5759813 + (TC)n Simple_repeat Simple_repeat 2 37 0 943 184 197 13 chr6 176655429 176655488 -5759754 + MSTA LTR MaLR 236 283 -145 1139 170 119 21 chr6 176655490 176655725 -5759517 + MSTA LTR MaLR 171 428 0 23 33 0 0 chr6 176656018 176656048 -5759194 + AT_rich Low_complexity Low_complexity 1 30 0 1066 304 61 30 chr6 176656151 176656690 -5758552 + L1M4 LINE L1 16 571 -5971 996 193 50 73 chr6 176656683 176657025 -5758217 + L1M4 LINE L1 4417 4750 -1396 * 522 308 24 0 chr6 176657030 176657199 -5758043 + ERVL LTR ERVL 2144 2316 -3448 2285 92 7 0 chr6 176657505 176657798 -5757444 - AluSg SINE Alu -15 295 1 709 248 64 16 chr6 176658206 176658481 -5756761 - MLT1H1 LTR MaLR -298 257 15 41 58 0 0 chr6 176659134 176659203 -5756039 + AT_rich Low_complexity Low_complexity 1 69 0 1534 191 110 8 chr6 176662288 176662643 -5752599 + MSTD LTR MaLR 6 396 0 245 339 16 68 chr6 176662995 176663187 -5752055 - L2 LINE L2 -1369 1945 1764 879 339 100 44 chr6 176663323 176663828 -5751414 - L2 LINE L2 -869 2445 1970 1091 217 159 29 chr6 176663828 176664242 -5751000 + MER110A LTR ERV1 1 468 0 879 339 100 44 chr6 176664242 176664664 -5750578 - L2 LINE L2 -1344 1970 1466 1657 242 8 33 chr6 176664706 176665016 -5750226 - MLT1A1 LTR MaLR -6 359 58 2108 145 0 0 chr6 176665016 176665326 -5749916 - AluSx SINE Alu -2 310 1 1657 242 8 33 chr6 176665326 176665378 -5749864 - MLT1A1 LTR MaLR -307 58 6 195 404 92 9 chr6 176667940 176668158 -5747084 - L2 LINE L2 -173 3099 2864 742 340 125 33 chr6 176669691 176670300 -5744942 + L2 LINE L2 1181 1917 -1397 243 0 0 0 chr6 176670300 176670327 -5744915 + (CA)n Simple_repeat Simple_repeat 2 28 0 742 340 125 33 chr6 176670327 176670708 -5744534 + L2 LINE L2 1917 2262 -1052 281 254 120 124 chr6 176670760 176671035 -5744207 + L2 LINE L2 3027 3300 -13 1315 179 38 123 chr6 176673972 176674369 -5740873 + MLT1A1 LTR MaLR 3 365 0 6583 204 109 37 chr6 176674369 176674556 -5740686 + MLT1A1-int LTR MaLR 1 173 -1562 1361 113 45 9 chr6 176674556 176674777 -5740465 - MER30 DNA MER1_type 0 230 2 6583 204 109 37 chr6 176674777 176676207 -5739035 + MLT1A1-int LTR MaLR 173 1735 0 1320 212 29 63 chr6 176676207 176676585 -5738657 + MLT1A1 LTR MaLR 1 365 0 314 293 95 58 chr6 176676625 176676664 -5738578 - L1ME4a LINE L1 -180 5941 5905 1099 197 5 0 chr6 176676664 176676872 -5738370 + MER6B DNA MER2_type 1 209 -1 314 293 95 58 chr6 176676872 176677074 -5738168 - L1ME4a LINE L1 -216 5905 5691 380 297 149 26 chr6 176677257 176677526 -5737716 - MLT1J LTR MaLR -197 314 13 2192 206 46 18 chr6 176677606 176678107 -5737135 + MLT2B2 LTR ERVL 1 515 0 195 375 0 0 chr6 176678827 176678907 -5736335 + L2 LINE L2 3225 3304 -9 222 323 0 0 chr6 176679186 176679251 -5735991 + (TA)n Simple_repeat Simple_repeat 2 66 0 2021 166 0 40 chr6 176679392 176679718 -5735524 + MER47A DNA MER2_type 3 313 -2010 1973 161 0 0 chr6 176679718 176680017 -5735225 - AluJb SINE Alu -13 299 1 2021 166 0 40 chr6 176680017 176680069 -5735173 + MER47A DNA MER2_type 313 366 0 319 349 0 0 chr6 176681397 176681503 -5733739 + L2 LINE L2 3189 3294 -19 451 281 58 29 chr6 176681568 176681739 -5733503 - MIR SINE MIR -66 196 21 2165 127 7 0 chr6 176682140 176682447 -5732795 - AluSq SINE Alu -2 311 3 651 216 0 39 chr6 176683035 176683188 -5732054 + Tigger7 DNA MER2_type 1 147 -586 494 192 23 46 chr6 176683186 176683316 -5731926 + Tigger7 DNA MER2_type 2365 2491 0 * 2103 144 0 0 chr6 176683427 176683732 -5731510 - AluSq SINE Alu -8 305 1 313 188 0 0 chr6 176683792 176683861 -5731381 + MER3 DNA MER1_type 102 123 -86 567 334 129 6 chr6 176684531 176684881 -5730361 + L3 LINE CR1 420 812 -765 1239 244 104 29 chr6 176685578 176686278 -5728964 - L1M4 LINE L1 -1207 4939 4187 358 270 36 92 chr6 176686289 176686457 -5728785 + L1MCa LINE L1 1290 1447 -4979 2428 77 7 0 chr6 176686457 176686757 -5728485 + AluY SINE Alu 1 302 -9 358 270 36 92 chr6 176686757 176686784 -5728458 + L1MCa LINE L1 1447 1474 -4952 492 301 59 19 chr6 176686850 176687106 -5728136 - L1MCa LINE L1 -4769 1838 1573 515 294 29 76 chr6 176687143 176687508 -5727734 - L1MCa LINE L1 -4993 1423 925 427 254 6 17 chr6 176688462 176688639 -5726603 + (TA)n Simple_repeat Simple_repeat 1 175 0 24 77 0 0 chr6 176688744 176688796 -5726446 + AT_rich Low_complexity Low_complexity 1 52 0 183 379 0 0 chr6 176690409 176690467 -5724775 - MIR3 SINE MIR -36 172 115 2098 123 3 16 chr6 176691927 176692243 -5722999 + AluSx SINE Alu 1 312 0 2224 72 0 20 chr6 176692344 176692648 -5722594 - AluY SINE Alu -13 298 1 28 0 0 0 chr6 176692980 176693008 -5722234 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chr6 176693249 176693298 -5721944 + AT_rich Low_complexity Low_complexity 1 49 0 1565 218 65 45 chr6 176693424 176693934 -5721308 - MLT2B1 LTR ERVL 0 520 1 5958 183 42 30 chr6 176693934 176695254 -5719988 - ERVL-B1 LTR ERVL -7 5757 4421 3724 199 3 0 chr6 176695251 176695930 -5719312 - MER70-int LTR ERVL -3197 2567 1887 * 1998 237 11 31 chr6 176695938 176696415 -5718827 - MER70-int LTR ERVL -5017 747 281 917 216 43 0 chr6 176696429 176696637 -5718605 + MER2 DNA MER2_type 1 217 -128 257 197 148 0 chr6 176696798 176696859 -5718383 - MER70-int LTR ERVL -5593 171 102 841 225 136 94 chr6 176696862 176696934 -5718308 - MLT2B1 LTR ERVL -65 455 387 2266 116 7 0 chr6 176696934 176697244 -5717998 - AluSx SINE Alu 0 312 1 841 225 136 94 chr6 176697244 176697401 -5717841 - MLT2B1 LTR ERVL -133 387 238 183 42 0 0 chr6 176697401 176697425 -5717817 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 841 225 136 94 chr6 176697425 176697598 -5717644 - MLT2B1 LTR ERVL -282 238 35 1565 214 87 23 chr6 176698522 176698627 -5716615 + MER47B DNA MER2_type 1 98 -2225 2061 144 0 3 chr6 176698627 176698925 -5716317 + AluSx SINE Alu 1 297 -15 1565 214 87 23 chr6 176698925 176699212 -5716030 + MER47B DNA MER2_type 98 418 0 296 348 0 0 chr6 176699876 176699968 -5715274 + MIR SINE MIR 53 144 -118 2248 84 0 0 chr6 176700225 176700533 -5714709 + AluY SINE Alu 1 308 0 25 51 0 0 chr6 176701725 176701764 -5713478 + AT_rich Low_complexity Low_complexity 1 39 0 505 236 132 5 chr6 176701996 176702208 -5713034 - MER57A LTR ERV1 0 403 165 468 180 14 36 chr6 176702405 176702527 -5712715 - MER31-int LTR ERV1 0 7537 7038 354 48 32 16 chr6 176702560 176702622 -5712620 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 1001 88 0 7 chr6 176702622 176702769 -5712473 + (TTCC)n Simple_repeat Simple_repeat 4 149 0 1382 196 28 28 chr6 176702770 176703056 -5712186 - AluJo SINE Alu -14 298 13 425 316 7 0 chr6 176703384 176703536 -5711706 - MER70-int LTR ERVL -364 4659 4507 2052 155 47 8 chr6 176703604 176703965 -5711277 + THE1C LTR MaLR 1 375 0 7131 37 0 0 chr6 176703990 176704913 -5710329 - L1PA4 LINE L1 -2154 3992 3070 11689 33 2 0 chr6 176704913 176707091 -5708151 + L1PA4 LINE L1 3985 6165 0 24 0 0 0 chr6 176707100 176707124 -5708118 + AT_rich Low_complexity Low_complexity 1 24 0 485 285 6 41 chr6 176707858 176708030 -5707212 - MER31-int LTR ERV1 -1360 6177 6012 374 289 0 22 chr6 176708142 176708277 -5706965 - MER31-int LTR ERV1 -1581 5956 5825 281 295 19 19 chr6 176708357 176708462 -5706780 - MER31-int LTR ERV1 -1961 4840 4736 2109 218 30 42 chr6 176708618 176709243 -5705999 - MER31-int LTR ERV1 -1716 5821 5204 1845 243 69 71 chr6 176709243 176710385 -5704857 - MER31-int LTR ERV1 -1884 3052 1913 541 173 10 0 chr6 176710512 176710616 -5704626 - MER34 LTR ERV1 -305 237 133 570 281 44 38 chr6 176710667 176710984 -5704258 + L1ME3 LINE L1 2459 2777 -3369 26 30 0 0 chr6 176711245 176711278 -5703964 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr6 176711804 176711831 -5703411 + AT_rich Low_complexity Low_complexity 1 27 0 1686 267 67 26 chr6 176711911 176712612 -5702630 + L1ME3 LINE L1 5433 6162 0 1956 146 39 41 chr6 176713978 176714340 -5700902 - THE1B LTR MaLR -3 361 1 9418 115 51 48 chr6 176714340 176715916 -5699326 - THE1B-int LTR MaLR 0 1580 1 1876 151 21 30 chr6 176715916 176716254 -5698988 - THE1B LTR MaLR 0 364 30 1542 183 10 10 chr6 176716505 176716724 -5698518 - MSTA LTR MaLR -2 426 205 1670 173 130 41 chr6 176716724 176717117 -5698125 - MSTA LTR MaLR 0 428 1 1542 183 10 10 chr6 176717117 176717192 -5698050 - MSTA LTR MaLR -222 206 132 27827 130 12 64 chr6 176717206 176723021 -5692221 - L1P3 LINE L1 -642 5512 12 311 287 11 11 chr6 176723399 176723493 -5691749 + L2 LINE L2 3220 3313 0 368 261 46 15 chr6 176725118 176725248 -5689994 - Charlie1 DNA MER1_type 0 2761 2628 227 333 35 7 chr6 176725258 176725402 -5689840 - Charlie1 DNA MER1_type -2555 206 59 378 317 77 63 chr6 176725417 176725615 -5689627 + L2 LINE L2 2439 2633 -680 1486 229 95 4 chr6 176725615 176726078 -5689164 + MLT1D LTR MaLR 1 505 0 378 317 77 63 chr6 176726078 176726703 -5688539 + L2 LINE L2 2633 3266 -47 246 317 75 19 chr6 176727251 176727412 -5687830 + L2 LINE L2 2142 2311 -1003 1004 117 49 31 chr6 176729162 176729324 -5685918 + AluSg/x SINE Alu 124 288 -22 1335 112 27 31 chr6 176729324 176729336 -5685906 - AluSg/x SINE Alu -21 289 278 796 103 0 0 chr6 176729336 176729452 -5685790 - L1MA3 LINE L1 -5 6300 6185 186 71 0 0 chr6 176729453 176729481 -5685761 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1335 112 27 31 chr6 176729481 176729689 -5685553 - AluSg/x SINE Alu -31 279 68 290 329 173 20 chr6 176730829 176731084 -5684158 + L2 LINE L2 2650 2943 -371 2374 90 6 3 chr6 176731383 176731695 -5683547 - AluSp SINE Alu 0 313 1 387 232 48 56 chr6 176731794 176731919 -5683323 + MER5A DNA MER1_type 3 126 -63 1240 115 0 0 chr6 176731920 176732085 -5683157 + AluSg/x SINE Alu 138 302 -10 317 250 42 0 chr6 176732090 176732162 -5683080 + MER5A DNA MER1_type 115 189 0 514 314 57 0 chr6 176732267 176732426 -5682816 + MIR SINE MIR 21 188 -74 668 323 61 37 chr6 176733473 176733770 -5681472 - L3 LINE CR1 -217 1360 1057 191 279 38 13 chr6 176733806 176733885 -5681357 - L3 LINE CR1 -659 918 838 535 331 23 6 chr6 176734138 176734313 -5680929 + MIR SINE MIR 14 191 -71 370 328 67 79 chr6 176734358 176734763 -5680479 + L2 LINE L2 2871 3270 -2 2306 83 3 7 chr6 176734924 176735225 -5680017 + AluY SINE Alu 1 300 -11 665 265 99 14 chr6 176735629 176735852 -5679390 - MIR SINE MIR -17 245 4 484 280 32 8 chr6 176738118 176738243 -5676999 - L2 LINE L2 -1 3312 3185 453 289 64 14 chr6 176788803 176789083 -5626159 - L1M4 LINE L1 -2095 4051 3758 22 0 0 0 chr6 176789160 176789182 -5626060 + AT_rich Low_complexity Low_complexity 1 22 0 370 269 120 37 chr6 176789202 176789444 -5625798 - L1ME LINE L1 -326 5795 5534 39 60 0 0 chr6 176789672 176789739 -5625503 + AT_rich Low_complexity Low_complexity 1 67 0 789 167 68 0 chr6 176791514 176791676 -5623566 - MER2 DNA MER2_type -1 344 172 1935 149 7 0 chr6 176792164 176792452 -5622790 + AluSx SINE Alu 1 290 -22 207 186 0 0 chr6 176792454 176792497 -5622745 + (TA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr6 176793042 176793066 -5622176 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 176793202 176793228 -5622014 + AT_rich Low_complexity Low_complexity 1 26 0 296 284 22 93 chr6 176793947 176794130 -5621112 - MIR SINE MIR -73 189 20 210 369 12 0 chr6 176794178 176794262 -5620980 - MIR SINE MIR -91 171 87 2338 104 0 7 chr6 176794623 176794932 -5620310 - AluSg SINE Alu -3 307 1 22 0 0 0 chr6 176795781 176795803 -5619439 + AT_rich Low_complexity Low_complexity 1 22 0 318 129 0 0 chr6 176796739 176796801 -5618441 + (CCCTG)n Simple_repeat Simple_repeat 3 64 0 253 96 0 39 chr6 176796901 176796953 -5618289 + (TCCCC)n Simple_repeat Simple_repeat 4 53 0 200 259 17 0 chr6 176797034 176797092 -5618150 + (TG)n Simple_repeat Simple_repeat 2 60 0 3049 196 25 14 chr6 176797907 176798543 -5616699 - MER73 LTR ERVL 0 644 2 309 239 108 15 chr6 176800594 176800724 -5614518 - MLT1J1 LTR MaLR -284 162 21 2780 79 0 0 chr6 176802813 176803168 -5612074 + THE1A LTR MaLR 1 355 0 7640 20 25 0 chr6 176803525 176804833 -5610409 - L1PA4 LINE L1 -1 6154 4831 4475 30 0 0 chr6 176804833 176805395 -5609847 + L1PA4 LINE L1 4261 4822 -1324 372 255 20 20 chr6 176805430 176805532 -5609710 - MIR SINE MIR 0 262 161 1445 180 35 21 chr6 176805536 176805825 -5609417 + MLT1A1 LTR MaLR 60 352 -13 230 313 39 23 chr6 176806132 176806260 -5608982 + L3 LINE CR1 738 867 -710 2453 126 13 5 chr6 176806347 176806719 -5608523 - THE1C LTR MaLR 0 375 1 1985 127 9 12 chr6 176806719 176807051 -5608191 - THE1C-int LTR MaLR 0 1580 1250 896 148 0 13 chr6 176807026 176807175 -5608067 - THE1C-int LTR MaLR -1244 336 190 * 1282 99 0 173 chr6 176807175 176807487 -5607755 - THE1C-int LTR MaLR -1320 260 3 2242 148 8 5 chr6 176807489 176807862 -5607380 - THE1C LTR MaLR 0 375 2 437 303 41 9 chr6 176807984 176808202 -5607040 - L1M4 LINE L1 -1164 4982 4758 877 247 89 52 chr6 176808491 176808929 -5606313 - MLT1E3 LTR MaLR -109 515 62 2061 164 55 17 chr6 176809254 176809656 -5605586 + MSTA LTR MaLR 1 417 -11 8688 179 36 2 chr6 176809666 176811264 -5603978 + MSTA-int LTR MaLR 1 1651 0 2028 179 48 31 chr6 176811264 176811633 -5603609 + MSTA LTR MaLR 1 379 -49 2156 147 8 22 chr6 176811633 176812000 -5603242 + THE1B LTR MaLR 1 362 -2 2028 179 48 31 chr6 176812000 176812050 -5603192 + MSTA LTR MaLR 379 427 -1 189 0 0 0 chr6 176812338 176812359 -5602883 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 5789 100 11 17 chr6 176812359 176813407 -5601835 - L1PA10 LINE L1 -21 6147 5106 208 391 69 32 chr6 176814408 176814843 -5600399 + L2 LINE L2 2299 2749 -565 294 346 103 0 chr6 176815260 176815396 -5599846 - MIR SINE MIR -59 203 54 2451 119 19 8 chr6 176815451 176815822 -5599420 + THE1C LTR MaLR 1 375 0 7967 115 14 73 chr6 176815824 176817255 -5597987 + THE1C-int LTR MaLR 2 1348 -232 1163 139 11 0 chr6 176817356 176817543 -5597699 + THE1C LTR MaLR 187 375 0 2815 10 0 0 chr6 176817701 176818009 -5597233 + AluY SINE Alu 1 308 -3 2532 312 146 31 chr6 176818205 176818449 -5596793 - L2 LINE L2 -45 3268 3053 1727 209 89 45 chr6 176818449 176818933 -5596309 - MLT1D LTR MaLR 0 505 1 2532 312 146 31 chr6 176818933 176820641 -5594601 - L2 LINE L2 -260 3053 1089 22 0 0 0 chr6 176820961 176820983 -5594259 + AT_rich Low_complexity Low_complexity 1 22 0 442 335 14 64 chr6 176824166 176824447 -5590795 - L2 LINE L2 -760 2554 2288 343 311 53 0 chr6 176824723 176824855 -5590387 + MIR SINE MIR 107 245 -17 2411 73 0 0 chr6 176825139 176825440 -5589802 + AluY SINE Alu 1 301 -10 190 281 87 87 chr6 176827071 176827256 -5587986 + L2 LINE L2 2453 2637 -677 21 0 0 0 chr6 176827363 176827384 -5587858 + AT_rich Low_complexity Low_complexity 1 21 0 3814 159 40 3 chr6 176827384 176828058 -5587184 + L1PA15 LINE L1 5467 6165 0 2082 129 3 0 chr6 176828543 176828838 -5586404 - AluSg SINE Alu -14 296 1 3207 114 10 14 chr6 176829382 176829428 -5585814 - MER75 DNA T2_type -6 508 463 505 101 13 0 chr6 176829428 176829507 -5585735 + MADE1 DNA Mariner 1 80 0 3207 114 10 14 chr6 176829507 176829970 -5585272 - MER75 DNA T2_type -51 463 1 1200 244 98 46 chr6 176830620 176830776 -5584466 - MLT1D LTR MaLR 0 505 359 3534 106 31 19 chr6 176830776 176831297 -5583945 + MER1A DNA MER1_type 1 527 0 1200 244 98 46 chr6 176831297 176831620 -5583622 - MLT1D LTR MaLR -146 359 1 29 90 0 0 chr6 176831705 176831783 -5583459 + AT_rich Low_complexity Low_complexity 1 78 0 400 134 37 0 chr6 176832128 176832210 -5583032 + CT-rich Low_complexity Low_complexity 4 88 0 25 0 0 0 chr6 176832245 176832270 -5582972 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr6 176832323 176832348 -5582894 + AT_rich Low_complexity Low_complexity 1 25 0 519 294 40 6 chr6 176832438 176832615 -5582627 - MLT1L LTR MaLR -2 613 431 375 270 40 16 chr6 176833776 176833902 -5581340 - MLT1I LTR MaLR -25 384 256 251 298 21 21 chr6 176834023 176834117 -5581125 - MLT1I LTR MaLR -313 96 3 325 339 47 21 chr6 176834148 176834384 -5580858 + L1ME4a LINE L1 5724 5965 -156 2326 95 0 3 chr6 176834850 176835145 -5580097 - AluSp SINE Alu -19 294 1 369 366 75 36 chr6 176835167 176835448 -5579794 + L1MEc LINE L1 49 340 -6056 877 265 80 34 chr6 176835851 176836604 -5578638 + L1MEc LINE L1 661 1452 -4763 634 287 18 3 chr6 176836637 176836844 -5578398 + L1PBa LINE L1 1594 1993 -4223 184 352 23 23 chr6 176836859 176836947 -5578295 - MIR SINE MIR -103 105 18 26 0 0 0 chr6 176837626 176837652 -5577590 + AT_rich Low_complexity Low_complexity 1 26 0 386 302 57 44 chr6 176837749 176838439 -5576803 + L1ME LINE L1 4905 5610 -552 338 301 111 52 chr6 176838531 176838937 -5576305 + L1MEc LINE L1 2335 2764 -3451 2148 92 34 15 chr6 176838941 176839267 -5575975 + LTR43 LTR ERV1 228 559 -43 5249 96 0 3 chr6 176839294 176840016 -5575226 - L1PA8A LINE L1 -28 6103 5384 * 9309 120 1 0 chr6 176840013 176841406 -5573836 + L1P LINE L1 3756 5149 -997 540 111 0 0 chr6 176841406 176841478 -5573764 + LTR43 LTR ERV1 531 602 0 216 0 0 0 chr6 176842036 176842060 -5573182 + (A)n Simple_repeat Simple_repeat 1 24 0 2032 125 0 7 chr6 176842471 176842786 -5572456 + AluSx SINE Alu 6 318 0 21 57 0 0 chr6 176843630 176843665 -5571577 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr6 176843782 176843813 -5571429 + AT_rich Low_complexity Low_complexity 1 31 0 268 253 25 13 chr6 176844114 176844193 -5571049 - MIR SINE MIR -102 160 81 1235 200 25 29 chr6 176846707 176846987 -5568255 - MLT1B LTR MaLR 0 390 112 406 216 86 26 chr6 176847039 176847155 -5568087 - MLT1B LTR MaLR -267 123 1 268 295 36 27 chr6 176847155 176847267 -5567975 - MIR SINE MIR -103 159 47 2158 242 51 15 chr6 176847592 176848178 -5567064 - L1ME1 LINE L1 -40 6921 6315 705 233 5 19 chr6 176848239 176848445 -5566797 - L1MC4a LINE L1 -234 7574 7372 2273 68 11 4 chr6 176848637 176848943 -5566299 - AluY SINE Alu 0 308 1 1608 248 26 20 chr6 176849015 176849484 -5565758 - L1MD2 LINE L1 -64 7920 6194 3858 271 47 16 chr6 176849573 176851120 -5564122 - L1ME1 LINE L1 -1037 5904 4310 346 307 84 22 chr6 176851121 176851300 -5563942 - L1ME1 LINE L1 -5365 1058 869 1370 165 12 28 chr6 176851310 176851565 -5563677 + THE1C LTR MaLR 125 375 0 9034 131 73 9 chr6 176851565 176853050 -5562192 + THE1C-int LTR MaLR 1 1580 0 2229 138 16 24 chr6 176853050 176853428 -5561814 + THE1C LTR MaLR 1 375 0 40 0 0 0 chr6 176853709 176853749 -5561493 + AT_rich Low_complexity Low_complexity 1 40 0 250 370 148 0 chr6 176855886 176855994 -5559248 + L2 LINE L2 3149 3272 0 242 314 51 0 chr6 176856753 176856871 -5558371 + MIR SINE MIR 128 251 -11 23 0 0 0 chr6 176857060 176857083 -5558159 + AT_rich Low_complexity Low_complexity 1 23 0 231 189 0 0 chr6 176857769 176857822 -5557420 + CT-rich Low_complexity Low_complexity 2 54 0 1067 178 84 93 chr6 176858021 176858376 -5556866 + MER57A LTR ERV1 42 393 -10 2500 87 0 89 chr6 176858851 176859265 -5555977 - MER51B LTR ERV1 0 377 1 1589 169 14 49 chr6 176859904 176860172 -5555070 + MER67D LTR ERV1 4 259 -255 2363 145 41 14 chr6 176860172 176860587 -5554655 - MSTB LTR MaLR 0 426 1 1589 169 14 49 chr6 176860587 176860667 -5554575 + MER67D LTR ERV1 259 340 -174 32 67 0 0 chr6 176861583 176861643 -5553599 + AT_rich Low_complexity Low_complexity 1 60 0 5572 97 71 24 chr6 176861643 176862303 -5552939 - L1PA13 LINE L1 -4 6159 5442 2368 97 0 6 chr6 176862303 176862614 -5552628 - AluSc SINE Alu 0 309 1 5572 97 71 24 chr6 176862614 176862855 -5552387 - L1PA13 LINE L1 -721 5442 5214 1750 144 13 0 chr6 176862851 176863149 -5552093 + L1P LINE L1 4972 5273 -873 * 2947 141 41 49 chr6 176864124 176864553 -5550689 - MER1A DNA MER1_type -2173 527 100 1829 127 67 0 chr6 176864553 176864853 -5550389 + AluSp SINE Alu 1 318 0 2947 141 41 49 chr6 176864853 176864953 -5550289 - MER1A DNA MER1_type -2600 100 1 3459 218 27 15 chr6 176865488 176866300 -5548942 - L1MB8 LINE L1 0 6178 5357 343 343 88 17 chr6 176866896 176867135 -5548107 - MIR SINE MIR -6 256 1 2280 78 7 10 chr6 176867425 176867731 -5547511 - AluY SINE Alu -6 305 1 196 260 15 155 chr6 176867997 176868114 -5547128 + MIR SINE MIR 13 145 -117 1719 168 10 19 chr6 176868114 176868423 -5546819 + AluSx SINE Alu 2 307 -5 196 260 15 155 chr6 176868423 176868471 -5546771 + MIR SINE MIR 145 148 -114 2374 86 0 0 chr6 176868471 176868763 -5546479 + AluY SINE Alu 1 292 -19 196 260 15 155 chr6 176868763 176868796 -5546446 + MIR SINE MIR 148 184 -78 2164 117 0 40 chr6 176869769 176870093 -5545149 - AluSx SINE Alu -1 311 1 267 340 39 46 chr6 176870134 176870287 -5544955 - MIR3 SINE MIR -21 187 36 197 139 23 0 chr6 176870453 176870496 -5544746 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr6 176870542 176870564 -5544678 + AT_rich Low_complexity Low_complexity 1 22 0 226 303 101 8 chr6 176870627 176870746 -5544496 + L3 LINE CR1 783 912 -665 2299 108 19 34 chr6 176870799 176871178 -5544064 - THE1C LTR MaLR 0 375 3 10067 128 7 30 chr6 176871180 176872798 -5542444 - THE1C-int LTR MaLR 0 1580 1 804 139 8 0 chr6 176872798 176872920 -5542322 - THE1C LTR MaLR 0 375 253 205 340 152 35 chr6 176873888 176874264 -5540978 + L2 LINE L2 1638 2057 -1257 1794 303 186 13 chr6 176875114 176876284 -5538958 - L2 LINE L2 -749 2565 1193 429 338 57 6 chr6 176876697 176876854 -5538388 + MIR SINE MIR 32 196 -66 299 208 66 28 chr6 176876969 176877075 -5538167 + L1MEc LINE L1 94 203 -6193 1292 253 117 16 chr6 176878494 176878921 -5536321 + L1MD1 LINE L1 8 477 -6063 * 5130 236 58 13 chr6 176878914 176881014 -5534228 + L1MD1 LINE L1 3680 5936 -700 221 0 35 0 chr6 176881014 176881043 -5534199 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5130 236 58 13 chr6 176881043 176881770 -5533472 + L1MD1 LINE L1 5936 6629 -7 218 352 28 0 chr6 176881894 176881965 -5533277 + MIR SINE MIR 20 92 -170 241 229 0 57 chr6 176883959 176884029 -5531213 - L1ME LINE L1 -543 5578 5513 200 189 0 38 chr6 176884079 176884132 -5531110 + T-rich Low_complexity Low_complexity 5 55 0 36 0 0 0 chr6 176884207 176884243 -5530999 + AT_rich Low_complexity Low_complexity 1 36 0 372 333 91 29 chr6 176884470 176884887 -5530355 - L1ME LINE L1 -768 5378 4936 620 306 78 38 chr6 176885139 176885535 -5529707 - LTR33 LTR ERVL -57 464 53 24 67 0 0 chr6 176885614 176885659 -5529583 + AT_rich Low_complexity Low_complexity 1 45 0 184 53 53 26 chr6 176886877 176886915 -5528327 + A-rich Low_complexity Low_complexity 1 39 0 487 316 99 34 chr6 176888339 176888409 -5526833 + L1MC4a LINE L1 4027 4091 -2055 1946 133 46 27 chr6 176888409 176888777 -5526465 - THE1C LTR MaLR 0 375 1 487 316 99 34 chr6 176888777 176889089 -5526153 + L1MC4a LINE L1 4091 4434 -1712 778 207 17 35 chr6 176889576 176889750 -5525492 - MER45A DNA AcHobo -7 171 1 460 368 94 24 chr6 176890049 176890622 -5524620 + L1MC4a LINE L1 5306 5918 -1890 1073 245 129 16 chr6 176891340 176891728 -5523514 - LTR50 LTR ERVL -19 776 345 450 0 0 0 chr6 176892113 176892163 -5523079 + (TA)n Simple_repeat Simple_repeat 2 51 0 1304 193 17 61 chr6 176892163 176892458 -5522784 - AluJb SINE Alu -30 282 1 397 312 8 16 chr6 176892591 176892716 -5522526 - L2 LINE L2 -1 3312 3189 2128 110 7 0 chr6 176892868 176893176 -5522066 + AluSq SINE Alu 4 313 0 935 210 16 37 chr6 176893540 176893783 -5521459 + AluJo SINE Alu 66 303 -9 367 319 52 75 chr6 176893915 176894354 -5520888 + L1MEd LINE L1 595 1023 -5096 271 282 9 18 chr6 176894384 176894494 -5520748 + L1MEd LINE L1 1139 1247 -5063 25 75 0 0 chr6 176894872 176894925 -5520317 + AT_rich Low_complexity Low_complexity 1 53 0 833 292 102 43 chr6 176894998 176896121 -5519121 + L1MEd LINE L1 2093 3282 -2847 1235 247 209 36 chr6 176896254 176896781 -5518461 + MLT1E2 LTR MaLR 3 620 -6 239 203 16 0 chr6 176896782 176896846 -5518396 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 252 86 0 0 chr6 176896847 176896924 -5518318 + (TATG)n Simple_repeat Simple_repeat 1 112 0 252 86 0 0 chr6 176896924 176896959 -5518283 + (TATG)n Simple_repeat Simple_repeat 2 36 0 236 197 0 14 chr6 176897034 176897105 -5518137 + (CATA)n Simple_repeat Simple_repeat 3 72 0 619 298 65 38 chr6 176897206 176897710 -5517532 + L1MEd LINE L1 3653 4170 -1959 585 194 14 21 chr6 176897748 176897892 -5517350 - L1M4 LINE L1 -913 5233 5091 453 287 73 0 chr6 176897957 176898107 -5517135 - MIR SINE MIR -100 162 2 3192 124 16 26 chr6 176898473 176899038 -5516204 - L1MA4A LINE L1 -5 6298 5740 2090 139 81 15 chr6 176899040 176899659 -5515583 + L1MA4A LINE L1 5057 5713 -590 260 136 0 0 chr6 176901410 176901454 -5513788 + MER41A LTR ERV1 511 554 0 561 156 11 0 chr6 176901455 176901545 -5513697 + MER41A-int LTR ERV1 1 91 -5855 402 68 41 55 chr6 176901542 176901615 -5513627 + MER41-int LTR ERV1 3828 3899 -2047 * 435 116 0 14 chr6 176901607 176901676 -5513566 + MER41-int LTR ERV1 4643 4710 -1236 655 202 8 0 chr6 176901766 176901885 -5513357 + FLAM_A SINE Alu 1 120 -13 284 356 106 35 chr6 176902367 176902679 -5512563 + L3 LINE CR1 1093 1426 -151 243 0 0 0 chr6 176902969 176902996 -5512246 + (TG)n Simple_repeat Simple_repeat 1 27 0 325 313 0 0 chr6 176905020 176905116 -5510126 + MER5A DNA MER1_type 11 106 -83 327 49 0 0 chr6 176905197 176905238 -5510004 + (CA)n Simple_repeat Simple_repeat 2 42 0 2610 248 65 28 chr6 176905259 176906816 -5508426 - L1ME1 LINE L1 -5 6161 4551 651 215 59 78 chr6 176906816 176907072 -5508170 + MLT1A1 LTR MaLR 1 251 -114 803 241 40 58 chr6 176907291 176907619 -5507623 + MLT1A1 LTR MaLR 44 365 0 533 242 80 15 chr6 176907621 176907885 -5507357 - L1ME1 LINE L1 -1593 4553 4273 804 115 0 0 chr6 176907885 176908007 -5507235 + (TCCCC)n Simple_repeat Simple_repeat 1 122 0 299 141 156 0 chr6 176908009 176908073 -5507169 - FLAM SINE Alu -20 113 40 314 292 62 0 chr6 176908085 176908229 -5507013 - L1ME1 LINE L1 -1877 4269 4117 325 192 64 13 chr6 176908233 176908311 -5506931 + L1M4 LINE L1 3107 3188 -2958 826 190 80 147 chr6 176908545 176908934 -5506308 + MLT1A1 LTR MaLR 3 365 0 25 0 0 0 chr6 176909351 176909376 -5505866 + AT_rich Low_complexity Low_complexity 1 25 0 641 366 123 6 chr6 176909427 176909899 -5505343 + L2 LINE L2 1712 2238 -1076 184 342 38 0 chr6 176909983 176910062 -5505180 + L2 LINE L2 2380 2461 -853 207 264 0 0 chr6 176913101 176913154 -5502088 + A-rich Low_complexity Low_complexity 5 57 0 33 90 0 0 chr6 176913633 176913722 -5501520 + AT_rich Low_complexity Low_complexity 1 89 0 1525 211 11 99 chr6 176914336 176914790 -5500452 - MLT2D LTR ERVL 0 414 1 239 321 0 12 chr6 176915263 176915344 -5499898 + HAL1b LINE L1 388 467 -881 29 0 0 0 chr6 176915539 176915568 -5499674 + AT_rich Low_complexity Low_complexity 1 29 0 708 324 89 63 chr6 176917039 176917863 -5497379 + HAL1b LINE L1 1 845 -503 2030 147 0 0 chr6 176918022 176918314 -5496928 + AluSx SINE Alu 1 292 -20 447 159 53 0 chr6 176918360 176918530 -5496712 + (TA)n Simple_repeat Simple_repeat 1 179 0 210 246 0 16 chr6 176918535 176918596 -5496646 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 608 110 0 63 chr6 176918597 176918788 -5496454 + (TA)n Simple_repeat Simple_repeat 2 180 0 36 23 0 0 chr6 176918788 176918831 -5496411 + AT_rich Low_complexity Low_complexity 1 43 0 31 26 0 0 chr6 176918943 176918981 -5496261 + AT_rich Low_complexity Low_complexity 1 38 0 818 64 72 31 chr6 176918995 176919436 -5495806 + (TATAA)n Simple_repeat Simple_repeat 1 458 0 336 209 38 0 chr6 176919436 176919541 -5495701 + (TA)n Simple_repeat Simple_repeat 2 110 0 1411 292 82 32 chr6 176919542 176920015 -5495227 + MLT1E LTR MaLR 2 498 -95 444 291 104 72 chr6 176920077 176920614 -5494628 + L1MC5 LINE L1 6637 7153 -808 21 36 0 0 chr6 176921841 176921869 -5493373 + AT_rich Low_complexity Low_complexity 1 28 0 231 234 16 0 chr6 176922713 176922777 -5492465 + MLT1I LTR MaLR 344 408 -1 1986 133 0 3 chr6 176923021 176923314 -5491928 + AluSg SINE Alu 1 292 -18 27 0 0 0 chr6 176923314 176923341 -5491901 + AT_rich Low_complexity Low_complexity 1 27 0 203 269 228 42 chr6 176923748 176923915 -5491327 + MIR SINE MIR 63 260 -2 2012 114 14 0 chr6 176923915 176924229 -5491013 - AluSx SINE Alu 0 318 1 1655 208 60 17 chr6 176924242 176924660 -5490582 - L1MA9 LINE L1 0 6312 5877 1100 224 18 18 chr6 176924662 176924943 -5490299 - L1 LINE L1 -2147 5020 4740 876 266 112 24 chr6 176924942 176925558 -5489684 - L1 LINE L1 -4042 3125 2456 * 378 188 0 0 chr6 176925582 176925646 -5489596 + Tigger4(Zombi) DNA MER2_type 2 65 -2666 1978 234 17 4 chr6 176925651 176926190 -5489052 - L1 LINE L1 -4640 2458 1913 432 300 46 105 chr6 176926511 176926967 -5488275 - L1 LINE L1 -6734 434 6 306 262 171 43 chr6 176927936 176928123 -5487119 + L1 LINE L1 4832 5042 -1104 2815 282 73 29 chr6 176928125 176929871 -5485371 + L1M4 LINE L1 3052 4875 -1271 259 194 15 15 chr6 176929925 176929992 -5485250 + L1M4 LINE L1 4864 4930 -1216 1986 167 75 3 chr6 176930076 176930447 -5484795 - L1PA15 LINE L1 -24 6141 5744 425 240 10 0 chr6 176930451 176930551 -5484691 + L1ME2 LINE L1 6012 6112 -52 198 171 0 0 chr6 176930562 176930603 -5484639 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 239 281 12 49 chr6 176930724 176930806 -5484436 - MLT1-int LTR MaLR -506 865 787 1392 118 5 24 chr6 176932506 176932740 -5482502 - AluSp SINE Alu 0 313 90 2215 57 7 0 chr6 176932773 176933052 -5482190 - AluY SINE Alu 0 311 31 210 191 0 0 chr6 176933294 176933341 -5481901 + CT-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr6 176933461 176933482 -5481760 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 176933519 176933546 -5481696 + AT_rich Low_complexity Low_complexity 1 27 0 634 267 27 65 chr6 176933546 176933838 -5481404 - L1ME2 LINE L1 -9 6155 5875 1346 205 18 42 chr6 176933852 176934184 -5481058 - L1MCa LINE L1 -6101 325 2 502 253 38 86 chr6 176934192 176934611 -5480631 - L1MEc LINE L1 -3615 2600 2202 257 295 23 16 chr6 176934627 176934756 -5480486 - L1MEc LINE L1 -4241 2155 2026 340 289 69 26 chr6 176934896 176935128 -5480114 - L1MEc LINE L1 -4614 1782 1541 1945 188 14 11 chr6 176936573 176936934 -5478308 + MLT1A1 LTR MaLR 4 365 0 250 370 148 0 chr6 176937070 176937178 -5478064 + L2 LINE L2 3149 3272 0 884 306 170 2 chr6 176937924 176938336 -5476906 + MER115 DNA AcHobo 160 640 -53 21 57 0 0 chr6 176938341 176938376 -5476866 + AT_rich Low_complexity Low_complexity 1 35 0 4307 216 27 8 chr6 176938409 176939933 -5475309 + L1M2 LINE L1 2460 4013 -2835 1185 133 0 0 chr6 176940174 176940340 -5474902 - AluSx SINE Alu -12 300 135 453 19 0 0 chr6 176940341 176940395 -5474847 + (TA)n Simple_repeat Simple_repeat 1 54 0 37787 44 1 1 chr6 176940524 176945144 -5470098 - L1P LINE L1 -1522 4624 7 2287 169 54 11 chr6 176946346 176946789 -5468453 - LTR1B LTR ERV1 0 826 365 278 100 0 33 chr6 176946790 176946850 -5468392 - LTR1B LTR ERV1 -404 422 365 1892 180 39 24 chr6 176946851 176947267 -5467975 - LTR1B LTR ERV1 -404 422 1 1012 210 35 31 chr6 176948014 176948243 -5466999 + L1MCa LINE L1 169 398 -6166 2413 220 44 58 chr6 176948244 176949351 -5465891 + L1MCa LINE L1 705 1802 -4762 * 10626 209 51 25 chr6 176949350 176949573 -5465669 + L1MCa LINE L1 19 235 -6191 1931 143 164 11 chr6 176949573 176949944 -5465298 + MSTA LTR MaLR 1 428 0 10626 209 51 25 chr6 176949944 176950836 -5464406 + L1MCa LINE L1 235 1102 -5324 2432 113 5 30 chr6 176950836 176951209 -5464033 - THE1B LTR MaLR 0 364 1 10626 209 51 25 chr6 176951209 176953797 -5461445 + L1MCa LINE L1 1102 3828 -2598 754 178 0 0 chr6 176953903 176954021 -5461221 - AluSx SINE Alu -184 129 12 1226 244 101 10 chr6 176954063 176954670 -5460572 - L1MEc LINE L1 -2670 3545 2884 1262 194 24 61 chr6 176954841 176955134 -5460108 - AluJo SINE Alu -30 282 1 21 36 0 0 chr6 176955182 176955210 -5460032 + AT_rich Low_complexity Low_complexity 1 28 0 246 321 41 41 chr6 176955254 176955472 -5459770 - L1MEc LINE L1 -4581 1815 1598 484 297 68 47 chr6 176955573 176955954 -5459288 - L1MEc LINE L1 -4947 1449 1061 1221 270 40 16 chr6 176955954 176956332 -5458910 - L1MD2 LINE L1 -12 6347 5961 870 170 45 15 chr6 176956333 176956533 -5458709 - L1MC3 LINE L1 -772 7013 6808 2083 236 26 15 chr6 176956537 176957144 -5458098 - L1M4 LINE L1 -1551 4664 4051 2629 90 98 5 chr6 176957169 176957579 -5457663 - LTR7 LTR ERV1 -2 448 1 2420 91 52 13 chr6 176957579 176957963 -5457279 - HERVH LTR ERV1 0 7713 7315 1362 138 18 5 chr6 176957956 176958173 -5457069 - HERVH LTR ERV1 -1894 5819 5600 * 2132 168 14 0 chr6 176958174 176958537 -5456705 - HERVH LTR ERV1 -2564 5149 4782 * 2368 129 0 3 chr6 176958528 176958877 -5456365 - HERVH LTR ERV1 -2878 4835 4488 3437 89 4 4 chr6 176958879 176959373 -5455869 - HERVH LTR ERV1 -3720 3993 3500 833 155 20 0 chr6 176959372 176959520 -5455722 - HERVH LTR ERV1 -4423 3290 3140 * 17347 95 14 31 chr6 176959514 176962678 -5452564 - HERVH LTR ERV1 -4726 2987 1 2194 84 3 8 chr6 176962680 176963041 -5452201 - LTR7 LTR ERV1 -2 448 1 1045 241 78 7 chr6 176963045 176963469 -5451773 - L1M4 LINE L1 -2205 4010 3533 526 220 17 0 chr6 176963537 176963655 -5451587 - L1MEc LINE L1 -1551 4664 4545 516 272 115 0 chr6 176963707 176963994 -5451248 - L1MEc LINE L1 -2661 3554 3235 829 235 192 0 chr6 176963998 176964203 -5451039 + MLT2C1 LTR ERVL 93 358 -39 267 31 0 0 chr6 176964203 176964235 -5451007 + (CA)n Simple_repeat Simple_repeat 2 33 0 829 235 192 0 chr6 176964235 176964284 -5450958 + MLT2C1 LTR ERVL 358 396 -1 1728 287 90 12 chr6 176964295 176964826 -5450416 - L1MC4 LINE L1 -794 7248 6643 212 0 36 0 chr6 176964826 176964854 -5450388 + (TG)n Simple_repeat Simple_repeat 1 29 0 1728 287 90 12 chr6 176964854 176965054 -5450188 - L1MC4 LINE L1 -1399 6643 6460 402 289 96 50 chr6 176965751 176966464 -5448778 - L1MEc LINE L1 -4650 1683 974 34 0 0 0 chr6 176967187 176967221 -5448021 + AT_rich Low_complexity Low_complexity 1 34 0 818 80 0 0 chr6 176967651 176967763 -5447479 + AluY SINE Alu 200 311 0 2126 126 0 0 chr6 176968249 176968550 -5446692 + AluSc SINE Alu 1 301 -8 315 0 0 0 chr6 176969056 176969091 -5446151 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 1832 127 4 8 chr6 176969091 176969358 -5445884 - AluSx SINE Alu -27 285 20 25 0 0 0 chr6 176969466 176969491 -5445751 + AT_rich Low_complexity Low_complexity 1 25 0 506 362 0 0 chr6 176969650 176969813 -5445429 - MIR SINE MIR -29 233 71 2368 95 0 0 chr6 176969964 176970281 -5444961 + L1PA7 LINE L1 5832 6148 -6 2031 132 7 7 chr6 176971041 176971345 -5443897 + AluSx SINE Alu 7 310 -2 1425 221 34 13 chr6 176971623 176971958 -5443284 - MLT1D LTR MaLR -1 504 188 225 65 0 0 chr6 176972169 176972200 -5443042 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2101 259 71 21 chr6 176972261 176972980 -5442262 - L1ME1 LINE L1 -5 6161 5407 1618 252 102 34 chr6 176972980 176973510 -5441732 + L1MD2 LINE L1 3967 4570 -1576 1034 66 7 0 chr6 176973510 176973646 -5441596 + L1PA10 LINE L1 6027 6163 -5 1618 252 102 34 chr6 176973646 176973910 -5441332 + L1MD2 LINE L1 4570 4815 -1331 1603 225 143 23 chr6 176973915 176974483 -5440759 - MER92B LTR ERV1 0 636 1 2332 55 0 52 chr6 176974508 176974817 -5440425 + AluY SINE Alu 17 309 -2 1290 249 36 42 chr6 176974846 176975687 -5439555 + L1MD2 LINE L1 4849 5687 -672 1836 194 76 62 chr6 176975726 176976067 -5439175 + L1MB8 LINE L1 5602 5956 -222 909 131 0 29 chr6 176976067 176976204 -5439038 - FLAM_C SINE Alu 0 133 1 1836 194 76 62 chr6 176976204 176976429 -5438813 + L1MB8 LINE L1 5956 6176 -2 290 327 9 0 chr6 176976430 176976537 -5438705 + L1MD2 LINE L1 5897 6004 -355 573 211 53 0 chr6 176976548 176976700 -5438542 + L1MD3 LINE L1 7828 7987 -8 3135 146 6 10 chr6 176978289 176978788 -5436454 - LOR1a LTR ERV1 0 497 1 242 304 134 9 chr6 176979000 176979112 -5436130 + L2 LINE L2 3144 3269 -3 29 28 0 0 chr6 176979140 176979176 -5436066 + AT_rich Low_complexity Low_complexity 1 36 0 209 383 17 17 chr6 176979659 176979779 -5435463 - L2 LINE L2 -466 2848 2729 1287 289 107 37 chr6 176979790 176980632 -5434610 - L1MEc LINE L1 -2220 3995 3095 297 252 63 9 chr6 176980777 176980888 -5434354 - L1MEc LINE L1 -4618 1778 1662 2779 287 94 23 chr6 176981018 176982543 -5432699 - L1MEc LINE L1 -4724 1672 39 190 71 0 0 chr6 176983093 176983121 -5432121 + MER5C DNA MER1_type 103 130 -194 1974 139 7 0 chr6 176984314 176984602 -5430640 + AluSx SINE Alu 1 290 -22 1827 166 11 23 chr6 176984616 176984966 -5430276 - THE1C LTR MaLR -29 346 1 233 247 27 14 chr6 176985942 176986015 -5429227 - tRNA-Ile-ATT tRNA tRNA -3 74 1 21 0 0 0 chr6 176986096 176986117 -5429125 + AT_rich Low_complexity Low_complexity 1 21 0 303 191 0 0 chr6 176987037 176987105 -5428137 + (TA)n Simple_repeat Simple_repeat 2 69 0 3545 258 139 41 chr6 176987211 176989378 -5425864 + L1M4 LINE L1 2568 4948 -1198 213 65 0 0 chr6 176989378 176989409 -5425833 + (A)n Simple_repeat Simple_repeat 1 31 0 1988 114 7 36 chr6 176989410 176989717 -5425525 + AluSx SINE Alu 1 298 -14 458 263 89 36 chr6 176990203 176990507 -5424735 + L1M4 LINE L1 5082 5401 -745 355 286 8 17 chr6 176990581 176990700 -5424542 + L1ME2 LINE L1 6041 6158 -6 313 293 27 86 chr6 176990730 176990952 -5424290 + L1MC4 LINE L1 7829 8037 -5 733 206 78 0 chr6 176991648 176991828 -5423414 - L1ME1 LINE L1 -336 5830 5637 905 283 83 37 chr6 176991840 176991982 -5423260 - L1MEc LINE L1 -2155 4060 3926 2441 53 0 3 chr6 176991982 176992285 -5422957 - AluY SINE Alu -9 302 1 905 283 83 37 chr6 176992285 176992820 -5422422 - L1MEc LINE L1 -2289 3926 3352 338 249 97 27 chr6 176992819 176993004 -5422238 - L1MEc LINE L1 -3180 3035 2838 * 229 23 0 91 chr6 176993060 176993104 -5422138 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 296 348 0 0 chr6 176993445 176993534 -5421708 + CT-rich Low_complexity Low_complexity 1 89 0 329 0 24 0 chr6 176993628 176993669 -5421573 + (CA)n Simple_repeat Simple_repeat 2 43 0 1700 163 42 7 chr6 176994418 176994701 -5420541 + AluJb SINE Alu 1 293 -19 216 0 0 0 chr6 176995227 176995251 -5419991 + (T)n Simple_repeat Simple_repeat 1 24 0 2385 55 3 3 chr6 176995391 176995681 -5419561 - AluY SINE Alu -10 301 12 963 263 51 6 chr6 176997347 176997663 -5417579 + L1ME3 LINE L1 2629 2958 -3188 282 172 20 30 chr6 176997841 176997940 -5417302 + (TTA)n Simple_repeat Simple_repeat 2 99 0 300 315 45 0 chr6 176998414 176998503 -5416739 - L3 LINE CR1 -115 1462 1370 23 33 0 0 chr6 176999509 176999539 -5415703 + AT_rich Low_complexity Low_complexity 1 30 0 197 295 39 0 chr6 177000597 177000675 -5414567 + L2 LINE L2 2872 2952 -320 329 308 46 31 chr6 177002863 177003058 -5412184 + L1ME3 LINE L1 4156 4353 -1793 39 60 0 0 chr6 177003058 177003125 -5412117 + AT_rich Low_complexity Low_complexity 1 67 0 706 279 92 35 chr6 177003195 177003628 -5411614 + L1ME3 LINE L1 4454 4911 -1235 261 0 0 0 chr6 177003656 177003685 -5411557 + (GA)n Simple_repeat Simple_repeat 2 30 0 1544 286 34 11 chr6 177003686 177004333 -5410909 + L1ME3 LINE L1 5359 6020 -142 446 348 69 24 chr6 177004532 177004952 -5410290 + L2 LINE L2 1698 2136 -1178 2135 113 10 6 chr6 177005083 177005394 -5409848 - AluSq SINE Alu -1 312 1 344 298 62 46 chr6 177005431 177005800 -5409442 - L1MEc LINE L1 -4174 2222 1848 393 313 88 35 chr6 177005811 177006462 -5408780 - L1MEc LINE L1 -4921 1443 803 1729 205 16 35 chr6 177006489 177006923 -5408319 - L1MB7 LINE L1 -11 6173 5748 597 213 37 0 chr6 177007721 177007857 -5407385 - L1MA8 LINE L1 -5 6286 6146 262 44 22 22 chr6 177008576 177008621 -5406621 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 7549 26 0 0 chr6 177008621 177009952 -5405290 - L1PA3 LINE L1 -24 6131 4801 1636 167 72 6 chr6 177062079 177062438 -5352804 - L1PB4 LINE L1 0 6156 5774 1285 205 25 0 chr6 177062454 177062698 -5352544 - AluJb SINE Alu -6 306 57 252 215 89 0 chr6 177062798 177062877 -5352365 - L1MEc LINE L1 -6273 123 38 781 202 6 6 chr6 177062904 177063072 -5352170 - L1MD1 LINE L1 -14 6228 6061 1853 178 40 40 chr6 177063076 177063624 -5351618 + MLT2A2 LTR ERVL 12 554 0 1467 189 85 6 chr6 177063624 177063941 -5351301 - L1MD1 LINE L1 -177 6065 5724 1382 265 19 17 chr6 177063946 177064425 -5350817 - L1MDa LINE L1 -1755 4785 4306 423 267 13 21 chr6 177064399 177064570 -5350672 - L1MDa LINE L1 -3613 2927 2761 * 526 211 8 23 chr6 177064576 177064709 -5350533 - L1MDa LINE L1 -4537 2003 1873 583 285 94 12 chr6 177065083 177065472 -5349770 + L1MCa LINE L1 1235 1854 -4753 449 314 98 45 chr6 177065543 177065919 -5349323 + L1ME LINE L1 101 496 -5574 324 0 0 0 chr6 177066102 177066138 -5349104 + (CA)n Simple_repeat Simple_repeat 1 36 0 310 262 0 0 chr6 177066977 177067038 -5348204 + Charlie1 DNA MER1_type 1 61 -2700 993 263 124 46 chr6 177067055 177067530 -5347712 - MLT1E2 LTR MaLR -6 620 109 2656 264 110 45 chr6 177067644 177068953 -5346289 + Charlie1 DNA MER1_type 70 2755 -6 1945 179 37 39 chr6 177069120 177069676 -5345566 + MLT2A2 LTR ERVL 1 553 -1 191 278 56 74 chr6 177071179 177071287 -5343955 - MIR3 SINE MIR -1 207 102 2398 80 0 3 chr6 177071754 177072065 -5343177 + AluY SINE Alu 1 310 -1 288 0 0 0 chr6 177072067 177072099 -5343143 + (TA)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr6 177072098 177072127 -5343115 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 22 35 0 0 chr6 177072610 177072639 -5342603 + AT_rich Low_complexity Low_complexity 1 29 0 225 180 0 0 chr6 177073675 177073725 -5341517 + (CTCA)n Simple_repeat Simple_repeat 2 51 0 752 251 35 7 chr6 177073753 177073942 -5341300 - MLT1A1 LTR MaLR 0 426 179 22 0 0 0 chr6 177073959 177073981 -5341261 + AT_rich Low_complexity Low_complexity 1 22 0 630 285 41 14 chr6 177074128 177074349 -5340893 + L2 LINE L2 1353 1579 -1735 372 224 7 34 chr6 177074880 177075027 -5340215 + (TATATG)n Simple_repeat Simple_repeat 2 144 0 676 261 21 81 chr6 177075666 177075950 -5339292 + L1MC/D LINE L1 5392 5658 -2150 511 225 46 6 chr6 177076066 177076239 -5339003 + L1M4 LINE L1 5118 5297 -849 306 261 0 15 chr6 177077477 177077542 -5337700 + MLT1J1 LTR MaLR 245 308 -138 180 212 0 0 chr6 177078051 177078084 -5337158 + L2 LINE L2 2282 2314 -1000 323 255 0 71 chr6 177078289 177078473 -5336769 + C-rich Low_complexity Low_complexity 2 172 0 449 265 6 39 chr6 177078596 177078777 -5336465 + CT-rich Low_complexity Low_complexity 5 179 0 308 347 12 35 chr6 177078785 177078958 -5336284 - MLT1J LTR MaLR -160 351 183 407 325 0 0 chr6 177079404 177079524 -5335718 - MLT1J LTR MaLR -349 162 43 207 0 0 0 chr6 177079569 177079592 -5335650 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 926 186 0 0 chr6 177080952 177081119 -5334123 - FRAM SINE Alu -1 175 9 609 283 143 23 chr6 177081227 177081955 -5333287 + L1ME3A LINE L1 2147 2961 -3185 522 281 113 47 chr6 177081956 177082248 -5332994 + L1ME3A LINE L1 5460 5731 -431 1944 164 7 0 chr6 177082248 177082553 -5332689 + AluJo SINE Alu 1 307 -5 522 281 113 47 chr6 177082553 177082879 -5332363 + L1ME3A LINE L1 5731 6138 -24 23 68 0 0 chr6 177082985 177083029 -5332213 + AT_rich Low_complexity Low_complexity 1 44 0 2070 148 132 5 chr6 177083631 177084002 -5331240 + MER47B DNA MER2_type 1 418 0 277 270 52 66 chr6 177084079 177084290 -5330952 + L1M4 LINE L1 4639 4846 -1300 594 264 0 5 chr6 177084433 177084634 -5330608 + L1MD3 LINE L1 7796 7995 0 376 337 16 21 chr6 177084660 177084850 -5330392 + L1M4 LINE L1 4980 5168 -978 539 333 42 0 chr6 177085238 177085430 -5329812 - MER20B DNA MER1_type -282 501 302 9642 124 31 9 chr6 177085540 177087272 -5327970 - HERVL-A2 LTR ERVL -3893 1761 1 1834 175 45 35 chr6 177087272 177087816 -5327426 - MLT2A2 LTR ERVL 0 554 1 3627 161 11 50 chr6 177087816 177088596 -5326646 - THE1C-int LTR MaLR -827 753 4 1426 181 89 45 chr6 177088599 177088958 -5326284 - THE1C LTR MaLR 0 375 1 342 299 94 68 chr6 177089049 177089357 -5325885 + L1MEd LINE L1 894 1209 -4910 399 242 102 23 chr6 177089461 177089589 -5325653 + MLT1I LTR MaLR 73 210 -199 237 267 82 53 chr6 177090232 177090606 -5324636 + L1P4 LINE L1 5355 5462 -704 183 125 18 36 chr6 177090611 177090667 -5324575 + (TA)n Simple_repeat Simple_repeat 1 55 0 12833 169 31 16 chr6 177090772 177091635 -5323607 + L1MA2 LINE L1 454 1303 -6262 2327 77 3 3 chr6 177091635 177091934 -5323308 - AluY SINE Alu -12 299 1 12833 169 31 16 chr6 177091934 177093488 -5321754 + L1MA2 LINE L1 1303 2907 -4658 5669 209 24 9 chr6 177093595 177095011 -5320231 + L1MA2 LINE L1 3632 5068 -2497 5049 196 4 20 chr6 177095003 177095704 -5319538 + L1MA2 LINE L1 6789 7473 -250 * 2385 101 0 0 chr6 177095704 177096011 -5319231 + AluSx SINE Alu 1 307 -5 5049 196 4 20 chr6 177096011 177096259 -5318983 + L1MA2 LINE L1 7473 7723 0 432 295 0 25 chr6 177096353 177096475 -5318767 + L2 LINE L2 3178 3296 -17 409 301 87 8 chr6 177096559 177096928 -5318314 - L1ME LINE L1 -344 5777 5380 2008 163 6 6 chr6 177097544 177097894 -5317348 + MER66B LTR ERV1 7 356 -130 324 259 24 0 chr6 177099139 177099224 -5316018 + L1ME3A LINE L1 6057 6143 -27 2270 60 35 0 chr6 177099290 177099575 -5315667 + AluY SINE Alu 1 295 -16 1794 150 33 0 chr6 177099742 177100042 -5315200 + LTR18B LTR ERVL 1 310 -304 2231 90 3 13 chr6 177100172 177100471 -5314771 + AluSc SINE Alu 1 296 -13 24 53 0 0 chr6 177101439 177101477 -5313765 + AT_rich Low_complexity Low_complexity 1 38 0 1517 247 6 0 chr6 177101672 177102024 -5313218 + MLT1A1 LTR MaLR 1 354 -11 608 245 196 13 chr6 177103066 177103204 -5312038 + MLT1C LTR MaLR 1 112 -393 1933 115 8 0 chr6 177103204 177103465 -5311777 + AluSc SINE Alu 40 302 -7 608 245 196 13 chr6 177103465 177103715 -5311527 + MLT1C LTR MaLR 112 486 -19 262 93 19 37 chr6 177104048 177104102 -5311140 - MLT2B2 LTR ERVL 0 515 463 2270 174 19 42 chr6 177104164 177104655 -5310587 - MLT2B2 LTR ERVL -19 535 3 316 278 111 84 chr6 177104671 177105005 -5310237 - L2 LINE L2 -606 2708 2366 24 0 0 0 chr6 177105344 177105368 -5309874 + AT_rich Low_complexity Low_complexity 1 24 0 423 269 90 60 chr6 177106111 177106379 -5308863 + L1M4 LINE L1 3003 3278 -2868 397 233 179 3 chr6 177106835 177107083 -5308159 - L1MD3 LINE L1 0 7995 6081 212 204 0 19 chr6 177107248 177107302 -5307940 + A-rich Low_complexity Low_complexity 4 56 0 6035 168 58 2 chr6 177107414 177108579 -5306663 - Tigger3b DNA MER2_type 0 1231 1 278 314 79 22 chr6 177108721 177109039 -5306203 + L1M4 LINE L1 4478 4813 -1333 218 257 29 0 chr6 177109045 177109115 -5306127 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 82 0 0 chr6 177109282 177109331 -5305911 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr6 177109364 177109395 -5305847 + AT_rich Low_complexity Low_complexity 1 31 0 297 237 0 26 chr6 177110684 177110760 -5304482 + (TG)n Simple_repeat Simple_repeat 1 74 0 253 275 33 42 chr6 177111099 177111219 -5304023 + MIR SINE MIR 144 262 0 1524 184 65 6 chr6 177111233 177111554 -5303688 + MER2 DNA MER2_type 1 340 -5 285 273 36 82 chr6 177111566 177111760 -5303482 - MARNA DNA Mariner -46 540 356 246 62 0 0 chr6 177113049 177113081 -5302161 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2016 125 7 3 chr6 177113084 177113371 -5301871 - AluSx SINE Alu -24 288 1 246 283 9 38 chr6 177113393 177113499 -5301743 - L1ME1 LINE L1 -9 6157 6055 301 254 87 8 chr6 177113503 177113629 -5301613 - L1MDb LINE L1 -4816 1590 1455 967 273 46 34 chr6 177113649 177113914 -5301328 - L1MDb LINE L1 -5798 611 227 1779 145 28 59 chr6 177113914 177113959 -5301283 - THE1C LTR MaLR 0 375 330 2431 80 6 3 chr6 177113959 177114271 -5300971 + AluSq SINE Alu 1 313 0 1779 145 28 59 chr6 177114271 177114612 -5300630 - THE1C LTR MaLR -45 330 1 967 273 46 34 chr6 177114612 177114749 -5300493 - L1MDb LINE L1 -6182 227 93 2892 217 67 21 chr6 177114780 177115061 -5300181 + L1MB3 LINE L1 1123 1390 -4992 1904 170 0 7 chr6 177115061 177115361 -5299881 + AluJb SINE Alu 1 298 -14 2892 217 67 21 chr6 177115361 177116764 -5298478 + L1MB3 LINE L1 1390 2978 -3404 3282 185 32 3 chr6 177116768 177117459 -5297783 + L1MB3 LINE L1 5702 6412 -7 22 70 0 0 chr6 177117712 177117755 -5297487 + AT_rich Low_complexity Low_complexity 1 43 0 934 281 72 25 chr6 177117836 177118579 -5296663 - L1ME LINE L1 -447 5723 4942 497 258 48 32 chr6 177118630 177118878 -5296364 - L1ME LINE L1 -1377 4769 4518 29 47 0 0 chr6 177119019 177119062 -5296180 + AT_rich Low_complexity Low_complexity 1 43 0 40577 42 22 1 chr6 177119080 177125105 -5290137 - L1PA5 LINE L1 0 6154 2 21 0 0 0 chr6 177125598 177125619 -5289623 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 177127181 177127210 -5288032 + AT_rich Low_complexity Low_complexity 1 29 0 218 185 0 74 chr6 177127531 177127585 -5287657 - L2 LINE L2 0 3313 3264 205 237 33 40 chr6 177128078 177128230 -5287012 + (TTTA)n Simple_repeat Simple_repeat 2 152 0 28 48 0 0 chr6 177128760 177128802 -5286440 + AT_rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr6 177128839 177128878 -5286364 + AT_rich Low_complexity Low_complexity 1 39 0 2697 30 0 30 chr6 177129280 177129608 -5285634 + AluYb8 SINE Alu 1 318 0 452 296 65 31 chr6 177133049 177133309 -5281933 + L2 LINE L2 3042 3310 -3 2352 46 0 0 chr6 177134150 177134461 -5280781 - AluY SINE Alu 0 311 1 379 211 0 0 chr6 177136314 177136390 -5278852 - LTR28 LTR ERV1 0 1020 945 2030 203 26 26 chr6 177136443 177136974 -5278268 - LTR27 LTR ERV1 -130 506 3 198 0 0 0 chr6 177136987 177137009 -5278233 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 648 315 26 13 chr6 177137371 177137603 -5277639 + MIR SINE MIR 2 236 -26 968 225 41 71 chr6 177138972 177139439 -5275803 + MLT1C LTR MaLR 2 454 -13 25 0 0 0 chr6 177140045 177140070 -5275172 + AT_rich Low_complexity Low_complexity 1 25 0 193 227 45 0 chr6 177140755 177140799 -5274443 - MIR SINE MIR -154 108 63 21 0 0 0 chr6 177141512 177141533 -5273709 + AT_rich Low_complexity Low_complexity 1 21 0 1428 215 62 72 chr6 177142263 177142840 -5272402 - LTR8A LTR ERV1 -2 725 177 362 192 14 0 chr6 177142841 177142914 -5272328 + THE1B LTR MaLR 291 364 0 344 318 67 28 chr6 177143000 177143179 -5272063 - L1ME LINE L1 -588 5533 5348 1854 160 9 6 chr6 177143428 177143759 -5271483 + MER46B DNA MER2_type 2 208 -28 1759 180 47 29 chr6 177143760 177144301 -5270941 + MLT2A2 LTR ERVL 1 554 0 25 75 0 0 chr6 177144366 177144419 -5270823 + AT_rich Low_complexity Low_complexity 1 53 0 1684 148 34 47 chr6 177144550 177144848 -5270394 - AluJb SINE Alu -18 294 1 23 33 0 0 chr6 177144859 177144889 -5270353 + AT_rich Low_complexity Low_complexity 1 30 0 241 271 17 0 chr6 177146275 177146334 -5268908 - L2 LINE L2 -25 3247 3188 690 273 100 61 chr6 177146368 177146878 -5268364 + MLT1F LTR MaLR 13 542 0 2098 242 107 26 chr6 177146950 177147503 -5267739 - L1MEc LINE L1 -4934 1462 955 474 18 0 0 chr6 177147503 177147558 -5267684 + (TGGA)n Simple_repeat Simple_repeat 2 56 0 2098 242 107 26 chr6 177147558 177148048 -5267194 - L1MEc LINE L1 -5441 955 334 1269 202 40 35 chr6 177148163 177148540 -5266702 - L1MDa LINE L1 -4763 1881 1503 383 281 26 20 chr6 177148543 177148696 -5266546 + MLT1A2 LTR MaLR 8 161 -213 282 116 0 0 chr6 177148714 177148757 -5266485 + (TC)n Simple_repeat Simple_repeat 2 44 0 936 197 6 6 chr6 177148799 177148977 -5266265 + MLT1A2 LTR MaLR 189 366 -8 3122 209 18 14 chr6 177148979 177149708 -5265534 + MLT1A2-int LTR MaLR 1 732 -639 1828 203 45 16 chr6 177150044 177150282 -5264960 + MLT1A2-int LTR MaLR 1300 1557 -178 2036 143 33 30 chr6 177150282 177150645 -5264597 + THE1B LTR MaLR 1 364 0 1828 203 45 16 chr6 177150645 177150830 -5264412 + MLT1A2-int LTR MaLR 1557 1735 0 1373 220 18 52 chr6 177150830 177151217 -5264025 + MLT1A2 LTR MaLR 1 374 0 199 338 15 0 chr6 177151583 177151651 -5263591 - L2 LINE L2 0 3313 3245 240 284 27 0 chr6 177152787 177152861 -5262381 - L2 LINE L2 0 3313 3238 473 253 51 40 chr6 177153627 177153856 -5261386 - MLT1H LTR MaLR -269 280 5 395 289 0 0 chr6 177154018 177154132 -5261110 - L1MC4 LINE L1 -5 8037 7924 643 208 72 21 chr6 177154145 177154381 -5260861 + L1MB7 LINE L1 5937 6184 0 2094 160 0 0 chr6 177158261 177158568 -5256674 - AluJo SINE Alu -5 307 1 1464 199 60 7 chr6 177158913 177159361 -5255881 - Charlie1 DNA MER1_type -37 2724 2253 649 171 0 68 chr6 177159381 177159527 -5255715 + FRAM SINE Alu 29 164 -12 3138 240 71 21 chr6 177159728 177161226 -5254016 - L1MDa LINE L1 -2598 4046 2472 2974 236 74 42 chr6 177161287 177162476 -5252766 - L1MDa LINE L1 -5141 1401 175 9644 39 3 1 chr6 177162488 177164436 -5250806 - L1PA3 LINE L1 -2 6153 4203 5470 50 1 0 chr6 177164436 177165161 -5250081 + L1P LINE L1 1218 1943 -4203 417 280 0 0 chr6 177165170 177165302 -5249940 - L1MDa LINE L1 -6383 159 28 274 251 103 42 chr6 177165937 177166267 -5248975 - L1MC4 LINE L1 0 8042 7693 309 340 39 13 chr6 177166300 177166456 -5248786 - L1MC4 LINE L1 -408 7634 7475 198 191 0 0 chr6 177166570 177166612 -5248630 + (CA)n Simple_repeat Simple_repeat 2 43 0 349 279 67 61 chr6 177166969 177167098 -5248144 + L1M4 LINE L1 4170 4297 -1849 2506 118 33 0 chr6 177167098 177167461 -5247781 + THE1C LTR MaLR 1 375 0 9315 122 41 44 chr6 177167461 177169041 -5246201 + THE1C-int LTR MaLR 1 1576 -4 2509 114 22 0 chr6 177169045 177169412 -5245830 + THE1C LTR MaLR 1 375 0 349 279 67 61 chr6 177169412 177169771 -5245471 + L1M4 LINE L1 4299 4667 -1479 379 224 232 4 chr6 177169789 177170021 -5245221 + L1M4 LINE L1 5228 5500 -674 24 67 0 0 chr6 177170598 177170643 -5244599 + AT_rich Low_complexity Low_complexity 1 45 0 458 266 114 13 chr6 177171913 177172071 -5243171 + MIR SINE MIR 25 198 -64 322 250 0 0 chr6 177172071 177172139 -5243103 + Tigger3b DNA MER2_type 1 68 -1163 22 0 0 0 chr6 177172276 177172298 -5242944 + AT_rich Low_complexity Low_complexity 1 22 0 598 176 0 34 chr6 177172310 177172429 -5242813 - MLT1A1 LTR MaLR -250 115 1 1839 178 54 26 chr6 177172438 177172865 -5242377 + MER65A LTR ERV1 1 439 -6 196 415 32 16 chr6 177173125 177173248 -5241994 + L2 LINE L2 3111 3235 -37 1374 204 98 65 chr6 177173676 177174165 -5241077 - MLT1D LTR MaLR 0 505 1 523 178 0 0 chr6 177175055 177175145 -5240097 - FRAM SINE Alu -45 131 42 1085 158 41 0 chr6 177175180 177175351 -5239891 - AluJb SINE Alu -101 211 34 5882 142 37 23 chr6 177175589 177176649 -5238593 - HSMAR2 DNA Mariner -1 1301 227 4901 119 92 5 chr6 177176751 177177645 -5237597 + Tigger3b DNA MER2_type 260 1231 0 185 327 0 0 chr6 177177646 177177701 -5237541 + MIR SINE MIR 198 252 -10 227 338 175 0 chr6 177177739 177177893 -5237349 - MIR SINE MIR -34 228 48 1573 151 10 29 chr6 177178047 177178358 -5236884 + THE1A LTR MaLR 2 306 -49 7113 55 18 0 chr6 177178381 177179356 -5235886 - L1PA6 LINE L1 0 6154 5176 180 0 0 0 chr6 177179356 177179376 -5235866 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6946 67 7 19 chr6 177179377 177180892 -5234350 - SVA Other Other -839 1380 1 278 0 0 106 chr6 177180892 177180939 -5234303 + (GGGAGA)n Simple_repeat Simple_repeat 2 43 0 2473 51 0 3 chr6 177180940 177181235 -5234007 - AluY SINE Alu -17 294 1 471 122 0 14 chr6 177181236 177181310 -5233932 + THE1A LTR MaLR 303 375 0 3049 36 0 5 chr6 177181687 177182072 -5233170 - L1PA5 LINE L1 -62 6092 5710 2111 47 4 0 chr6 177182070 177182348 -5232894 + L1P LINE L1 3860 4138 -2008 * 789 244 82 33 chr6 177182349 177182884 -5232358 - L1ME LINE L1 -728 6233 5687 740 296 55 13 chr6 177182893 177183349 -5231893 - L1ME LINE L1 -4143 2979 2505 875 307 36 55 chr6 177183575 177184136 -5231106 - L1ME LINE L1 -5842 581 32 365 253 0 10 chr6 177186752 177186851 -5228391 + MER81 DNA DNA 1 98 -16 887 167 0 70 chr6 177187756 177187942 -5227300 - MLT2B1 LTR ERVL -347 173 1 22381 186 28 11 chr6 177187951 177191157 -5224085 + ERVL-B1 LTR ERVL 408 3757 -2007 1589 209 11 19 chr6 177191157 177191521 -5223721 - MLT1A1 LTR MaLR 0 365 5 22381 186 28 11 chr6 177191521 177193216 -5222026 + ERVL-B1 LTR ERVL 3757 5422 -342 1020 138 6 0 chr6 177193219 177193378 -5221864 + ERVL-B1 LTR ERVL 5598 5757 -7 1175 239 54 89 chr6 177193378 177193805 -5221437 + MLT2B1 LTR ERVL 1 412 -2 334 305 27 88 chr6 177193814 177194109 -5221133 + L2 LINE L2 2805 3081 -191 26 0 0 0 chr6 177194758 177194784 -5220458 + AT_rich Low_complexity Low_complexity 1 26 0 663 284 4 55 chr6 177195067 177195321 -5219921 - MIR SINE MIR 0 262 22 691 208 0 7 chr6 177195482 177195636 -5219606 - L1MD1 LINE L1 -16 6226 6074 323 178 33 33 chr6 177195662 177195752 -5219490 - L1MDa LINE L1 -6203 337 248 640 238 48 37 chr6 177195765 177195954 -5219288 - L1MDa LINE L1 -6334 206 16 189 0 0 0 chr6 177195957 177195978 -5219264 + (A)n Simple_repeat Simple_repeat 1 21 0 908 249 78 25 chr6 177196557 177196878 -5218364 - MER2 DNA MER2_type 0 345 8 1417 246 110 5 chr6 177196884 177197303 -5217939 - MLT1C LTR MaLR -4 463 1 1478 155 3 108 chr6 177197662 177198001 -5217241 + AluJb SINE Alu 2 307 0 209 347 0 0 chr6 177198005 177198077 -5217165 + MIR SINE MIR 112 183 -79 599 198 16 0 chr6 177198184 177198305 -5216937 - AluSg/x SINE Alu -6 303 181 390 313 39 58 chr6 177198309 177198404 -5216838 - L1MDb LINE L1 -5414 995 900 1486 138 27 0 chr6 177198404 177198664 -5216578 - L1MA5A LINE L1 0 6297 6031 390 313 39 58 chr6 177198664 177198827 -5216415 - L1MDb LINE L1 -5509 900 742 204 163 0 0 chr6 177199447 177199490 -5215752 + (CA)n Simple_repeat Simple_repeat 2 44 0 639 317 81 34 chr6 177199833 177200243 -5214999 + L2 LINE L2 1519 1947 -1367 2580 240 54 34 chr6 177200388 177200869 -5214373 + L1ME LINE L1 3942 4412 -1734 2501 111 8 0 chr6 177200869 177201221 -5214021 - THE1A LTR MaLR 0 355 1 2580 240 54 34 chr6 177201221 177201795 -5213447 + L1ME LINE L1 4412 5018 -1128 481 307 78 42 chr6 177201796 177202102 -5213140 - L2 LINE L2 -1394 1920 1604 201 39 0 0 chr6 177202681 177202707 -5212535 + (CA)n Simple_repeat Simple_repeat 2 27 0 315 302 73 42 chr6 177202991 177203183 -5212059 - L2 LINE L2 -1784 1530 1333 258 302 24 41 chr6 177204915 177205084 -5210158 + L1ME LINE L1 5689 5854 -267 238 354 74 17 chr6 177205213 177205388 -5209854 - L2 LINE L2 -523 2791 2607 193 290 70 50 chr6 177205651 177205751 -5209491 + L2 LINE L2 3202 3303 -10 438 274 105 39 chr6 177206476 177206707 -5208535 - L1ME4a LINE L1 -11 6110 5896 2243 106 0 16 chr6 177206707 177207018 -5208224 - AluSx SINE Alu -6 306 1 438 274 105 39 chr6 177207018 177207245 -5207997 - L1ME4a LINE L1 -225 5896 5622 322 355 49 29 chr6 177207283 177207528 -5207714 + MIR SINE MIR 2 251 -11 1855 121 137 74 chr6 177207819 177208199 -5207043 + MER4A LTR ERV1 261 664 0 534 331 132 51 chr6 177209279 177210236 -5205006 + L2 LINE L2 1871 2904 -410 240 86 0 0 chr6 177210255 177210290 -5204952 + (TG)n Simple_repeat Simple_repeat 2 36 0 369 178 27 0 chr6 177210483 177210556 -5204686 - MSTC LTR MaLR -353 75 1 3935 210 35 78 chr6 177210560 177211326 -5203916 + L1MB2 LINE L1 3828 4625 -1546 7236 87 25 1 chr6 177211326 177213095 -5202147 + L1PA7 LINE L1 4362 6151 -3 3935 210 35 78 chr6 177213095 177214134 -5201108 + L1MB2 LINE L1 4625 5489 -682 239 29 57 0 chr6 177214134 177214169 -5201073 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 3935 210 35 78 chr6 177214169 177214767 -5200475 + L1MB2 LINE L1 5489 6111 -60 255 295 20 7 chr6 177215035 177215184 -5200058 + L1M4 LINE L1 2265 2415 -3731 21 71 0 0 chr6 177215665 177215707 -5199535 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr6 177216456 177216479 -5198763 + AT_rich Low_complexity Low_complexity 1 23 0 219 69 0 0 chr6 177219076 177219105 -5196137 + (TG)n Simple_repeat Simple_repeat 1 29 0 474 293 145 74 chr6 177219198 177220033 -5195209 - L1M4 LINE L1 -2212 3934 3000 2200 37 44 7 chr6 177220033 177220343 -5194899 - AluY SINE Alu 0 320 1 474 293 145 74 chr6 177220343 177220612 -5194630 - L1M4 LINE L1 -3146 3000 2751 2078 148 0 0 chr6 177222685 177222988 -5192254 - AluSx SINE Alu -9 303 1 495 0 0 0 chr6 177223193 177223248 -5191994 + (TA)n Simple_repeat Simple_repeat 1 55 0 25 0 0 0 chr6 177224319 177224344 -5190898 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr6 177224496 177224517 -5190725 + (TG)n Simple_repeat Simple_repeat 1 21 0 434 293 29 23 chr6 177224573 177224747 -5190495 - MARNA DNA Mariner -321 265 91 1723 149 25 141 chr6 177225399 177225875 -5189367 - MSTB1 LTR MaLR -8 424 4 7712 183 14 66 chr6 177225878 177227617 -5187625 - MSTB-int LTR MaLR 0 1651 2 2005 210 31 2 chr6 177227619 177228033 -5187209 - MSTB LTR MaLR 0 426 1 341 55 36 0 chr6 177228697 177228752 -5186490 + (CTACT)n Simple_repeat Simple_repeat 1 57 0 18110 34 2 0 chr6 177229036 177231997 -5183245 - L1PA3 LINE L1 -3 6152 3188 6517 22 0 0 chr6 177231997 177232779 -5182463 + L1PA3 LINE L1 2390 3171 -2975 209 152 0 91 chr6 177232779 177232845 -5182397 + T-rich Low_complexity Low_complexity 1 60 0 327 49 0 0 chr6 177233588 177233629 -5181613 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 318 233 105 79 chr6 177234922 177235227 -5180015 - L1MC5 LINE L1 -34 7927 7615 713 152 0 0 chr6 177235235 177235347 -5179895 - AluSg/x SINE Alu -9 301 190 670 220 63 132 chr6 177235378 177235776 -5179466 - L1MC5 LINE L1 -550 7411 7066 2014 135 0 28 chr6 177235776 177236094 -5179148 - AluSg1 SINE Alu 0 309 1 670 220 63 132 chr6 177236094 177236285 -5178957 - L1MC5 LINE L1 -895 7066 6863 412 183 191 9 chr6 177236303 177236418 -5178824 - L1ME3A LINE L1 -8 6162 6027 2111 136 0 0 chr6 177236499 177236794 -5178448 - AluSx SINE Alu -17 295 1 1623 178 112 30 chr6 177236822 177237188 -5178054 - MSTD LTR MaLR 0 396 1 28 0 0 0 chr6 177237580 177237608 -5177634 + AT_rich Low_complexity Low_complexity 1 28 0 7830 40 1 0 chr6 177238684 177240415 -5174827 - L1PA3 LINE L1 -3 6152 4421 10728 34 1 0 chr6 177240415 177241780 -5173462 + L1PA3 LINE L1 3039 4405 -1741 39 0 0 0 chr6 177242632 177242671 -5172571 + AT_rich Low_complexity Low_complexity 1 39 0 19220 147 38 33 chr6 177242809 177246323 -5168919 + ERVL-A2 LTR ERVL 2227 5756 -8 1705 177 63 30 chr6 177246326 177246859 -5168383 + MLT2A2 LTR ERVL 3 550 -4 2084 198 26 12 chr6 177246859 177247289 -5167953 + THE1C-int LTR MaLR 749 1184 -396 479 112 122 10 chr6 177247389 177247487 -5167755 + THE1C-int LTR MaLR 1543 1651 0 1700 150 66 41 chr6 177247487 177247853 -5167389 + THE1C LTR MaLR 1 375 0 344 370 33 19 chr6 177247973 177248184 -5167058 - L1MEd LINE L1 -5437 682 469 292 279 12 0 chr6 177248185 177248271 -5166971 + (TA)n Simple_repeat Simple_repeat 2 88 0 420 123 0 0 chr6 177248590 177248663 -5166579 + (CA)n Simple_repeat Simple_repeat 1 73 0 873 272 28 39 chr6 177248932 177249419 -5165823 + MLT1B LTR MaLR 1 465 -2 361 70 40 40 chr6 177249733 177249833 -5165409 + (TCTA)n Simple_repeat Simple_repeat 4 103 0 877 258 67 58 chr6 177249896 177250793 -5164449 + L1MEc LINE L1 1899 2777 -3438 246 32 0 0 chr6 177251228 177251259 -5163983 + (TG)n Simple_repeat Simple_repeat 2 32 0 338 254 47 71 chr6 177253580 177253749 -5161493 - MLT1I LTR MaLR -229 180 16 193 386 15 0 chr6 177253838 177253970 -5161272 - MIR SINE MIR 0 262 129 296 167 73 0 chr6 177255112 177255208 -5160034 + (CTGTG)n Simple_repeat Simple_repeat 3 105 0 42 0 0 0 chr6 177255370 177255412 -5159830 + AT_rich Low_complexity Low_complexity 1 42 0 7845 16 0 0 chr6 177255412 177256690 -5158552 - L1PA2 LINE L1 -1 6154 4877 278 220 10 60 chr6 177257553 177257653 -5157589 - MER58 DNA MER1_type -8 2412 2318 243 311 0 33 chr6 177257664 177257754 -5157488 - MER58 DNA MER1_type -2321 99 13 31 26 0 0 chr6 177258869 177258907 -5156335 + AT_rich Low_complexity Low_complexity 1 38 0 2507 59 3 3 chr6 177258972 177259277 -5155965 + AluY SINE Alu 1 305 -6 423 288 47 59 chr6 177260076 177260312 -5154930 + L2 LINE L2 3064 3296 -17 2615 172 55 55 chr6 177260354 177261070 -5154172 - L1MC2 LINE L1 -1 6623 5908 628 75 0 0 chr6 177261071 177261151 -5154091 - AluS SINE Alu -233 80 1 2117 225 80 38 chr6 177261151 177262114 -5153128 - L1MC2 LINE L1 -743 5683 4700 557 232 48 0 chr6 177262161 177262329 -5152913 - L1MC2 LINE L1 -2904 3522 3347 820 222 62 49 chr6 177262334 177262668 -5152574 + MSTD LTR MaLR 1 396 0 5819 240 75 24 chr6 177262670 177264317 -5150925 + MSTD-int LTR MaLR 2 1733 -2 1336 199 141 14 chr6 177264319 177264666 -5150576 + MSTD LTR MaLR 1 391 -5 5738 210 71 95 chr6 177264669 177265757 -5149485 - L1MC2 LINE L1 -3078 3348 2235 1954 144 0 7 chr6 177265757 177266181 -5149061 - AluSx SINE Alu 0 422 1 5738 210 71 95 chr6 177266181 177268496 -5146746 - L1MC2 LINE L1 -4191 2235 26 21 57 0 0 chr6 177268693 177268728 -5146514 + AT_rich Low_complexity Low_complexity 1 35 0 219 271 30 23 chr6 177268736 177268869 -5146373 + (TA)n Simple_repeat Simple_repeat 2 135 0 245 305 171 18 chr6 177269023 177269187 -5146055 + MIR SINE MIR 15 203 -59 218 374 0 0 chr6 177269380 177269479 -5145763 + L2 LINE L2 2217 2315 -999 325 299 76 27 chr6 177269536 177269837 -5145405 + L1ME LINE L1 5458 5773 -348 5897 125 206 62 chr6 177270736 177272218 -5143024 - pTR5 LTR ERV1 0 2438 743 252 386 23 0 chr6 177272254 177272386 -5142856 - MIR SINE MIR -108 154 20 2644 99 10 5 chr6 177272522 177272924 -5142318 + MLT2A1 LTR ERVL 1 404 -40 236 210 48 0 chr6 177272925 177272987 -5142255 + (TA)n Simple_repeat Simple_repeat 1 65 0 302 261 11 22 chr6 177272987 177273079 -5142163 - L1MC4 LINE L1 -1338 6704 6614 346 241 35 0 chr6 177273079 177273166 -5142076 - L1MC4 LINE L1 -1339 6703 6614 336 274 0 32 chr6 177273086 177273181 -5142061 + L1MC4 LINE L1 6612 6703 -1339 * 309 208 13 26 chr6 177273199 177273276 -5141966 + L1MCa LINE L1 1995 2070 -4356 241 106 43 0 chr6 177273309 177273356 -5141886 + L1MCa LINE L1 2005 2053 -4373 574 232 12 0 chr6 177273363 177273527 -5141715 + (TA)n Simple_repeat Simple_repeat 2 167 0 180 230 27 14 chr6 177273516 177273590 -5141652 + (TATG)n Simple_repeat Simple_repeat 2 76 0 * 303 256 58 12 chr6 177273590 177273676 -5141566 - L1MC4 LINE L1 -1339 6703 6614 626 211 23 0 chr6 177273683 177273858 -5141384 + (TA)n Simple_repeat Simple_repeat 2 180 0 318 221 15 0 chr6 177273870 177273938 -5141304 - L1MCa LINE L1 -4363 2063 1995 * 354 258 11 0 chr6 177273932 177274021 -5141221 - L1MC4 LINE L1 -1339 6703 6614 372 276 0 0 chr6 177274022 177274149 -5141093 + (TA)n Simple_repeat Simple_repeat 2 128 0 312 313 0 30 chr6 177274201 177274332 -5140910 + (TATATG)n Simple_repeat Simple_repeat 1 127 0 285 197 0 0 chr6 177274540 177274601 -5140641 + (TA)n Simple_repeat Simple_repeat 2 62 0 299 70 0 0 chr6 177274607 177274650 -5140592 + MLT2A1 LTR ERVL 390 432 -12 231 261 0 22 chr6 177274653 177274745 -5140497 + L1MC4 LINE L1 6614 6703 -1339 350 91 0 0 chr6 177274762 177274817 -5140425 + MLT2A1 LTR ERVL 390 444 0 287 335 123 6 chr6 177275400 177275579 -5139663 + MIR SINE MIR 58 257 -5 299 286 21 14 chr6 177275610 177275755 -5139487 - MIR SINE MIR -40 222 80 25 0 0 0 chr6 177277262 177277287 -5137955 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr6 177278299 177278341 -5136901 + AT_rich Low_complexity Low_complexity 1 42 0 258 188 39 19 chr6 177279081 177279235 -5136007 + (TG)n Simple_repeat Simple_repeat 1 157 0 397 163 37 30 chr6 177279251 177279762 -5135480 + (TG)n Simple_repeat Simple_repeat 1 514 0 381 156 43 23 chr6 177279787 177280043 -5135199 + (TG)n Simple_repeat Simple_repeat 1 261 0 1546 174 27 0 chr6 177281781 177281877 -5133365 + AluJb SINE Alu 28 120 -192 315 0 0 0 chr6 177281877 177281912 -5133330 + (CA)n Simple_repeat Simple_repeat 2 36 0 1546 174 27 0 chr6 177281912 177282073 -5133169 + AluJb SINE Alu 120 292 -20 26 0 0 0 chr6 177282235 177282261 -5132981 + AT_rich Low_complexity Low_complexity 1 26 0 625 320 91 64 chr6 177282326 177282417 -5132825 - L1ME3A LINE L1 -286 5884 5797 1736 76 0 13 chr6 177282417 177282642 -5132600 - AluY SINE Alu -88 223 2 625 320 91 64 chr6 177282642 177283779 -5131463 - L1ME3A LINE L1 -373 5797 4619 258 297 20 10 chr6 177283852 177283953 -5131289 - L1ME3A LINE L1 -1984 4162 4061 30 45 0 0 chr6 177284183 177284227 -5131015 + AT_rich Low_complexity Low_complexity 1 44 0 329 296 40 37 chr6 177284330 177284678 -5130564 - L1ME3A LINE L1 -2515 3631 3283 32 26 0 0 chr6 177284825 177284864 -5130378 + AT_rich Low_complexity Low_complexity 1 39 0 2271 70 0 23 chr6 177284879 177285178 -5130064 - AluY SINE Alu -19 292 1 2268 99 0 3 chr6 177285285 177285578 -5129664 - AluSc SINE Alu -17 292 1 3771 248 111 43 chr6 177285907 177288203 -5127039 + L1M3e LINE L1 335 2769 -4338 28 48 0 0 chr6 177288263 177288305 -5126937 + AT_rich Low_complexity Low_complexity 1 42 0 216 0 0 0 chr6 177290140 177290164 -5125078 + (CA)n Simple_repeat Simple_repeat 2 25 0 185 192 67 87 chr6 177290254 177290358 -5124884 - L2 LINE L2 -34 3238 3137 362 215 13 0 chr6 177290752 177290831 -5124411 + LTR16C LTR ERVL 314 393 -98 321 351 124 24 chr6 177290903 177291482 -5123760 - L2 LINE L2 -739 2575 1939 2686 245 47 36 chr6 177294781 177295066 -5120176 - L1MEc LINE L1 -1511 4704 4424 1003 243 17 17 chr6 177295066 177295305 -5119937 + MER8 DNA MER2_type 1 239 0 2686 245 47 36 chr6 177295305 177296053 -5119189 - L1MEc LINE L1 -1791 4424 3659 1128 229 52 16 chr6 177296067 177296531 -5118711 - L1MEc LINE L1 -3677 2538 2100 566 270 9 13 chr6 177296546 177296776 -5118466 - L1MEc LINE L1 -4736 1660 1432 * 1183 264 12 80 chr6 177296763 177297263 -5117979 - L1MEc LINE L1 -5894 502 37 508 289 192 38 chr6 177297594 177297964 -5117278 - MLT1G1 LTR MaLR 0 595 169 260 270 67 0 chr6 177297993 177298082 -5117160 - MLT1G1 LTR MaLR -499 96 2 200 358 30 0 chr6 177298870 177298937 -5116305 + L2 LINE L2 3203 3271 -1 329 261 153 23 chr6 177299585 177299938 -5115304 + L1ME4a LINE L1 5723 6121 0 25 31 0 0 chr6 177300378 177300410 -5114832 + AT_rich Low_complexity Low_complexity 1 32 0 2573 116 3 0 chr6 177300468 177300831 -5114411 + THE1B LTR MaLR 1 364 0 191 292 0 0 chr6 177303893 177303941 -5111301 + L2 LINE L2 3192 3239 -74 440 157 26 78 chr6 177304533 177304648 -5110594 + MER5A DNA MER1_type 4 112 -77 2272 84 7 13 chr6 177305367 177305677 -5109565 - AluSc SINE Alu -1 308 1 209 282 128 0 chr6 177306637 177306715 -5108527 - L2 LINE L2 -3 3310 3223 468 321 42 0 chr6 177307535 177307700 -5107542 + MIR SINE MIR 53 224 -38 361 264 0 138 chr6 177307807 177307966 -5107276 + MIR3 SINE MIR 38 174 -34 752 210 33 0 chr6 177308035 177308216 -5107026 + L1MC1 LINE L1 3587 3773 -2373 4624 146 52 1 chr6 177308216 177309030 -5106212 + L1MC1 LINE L1 5477 6331 -2 885 288 62 0 chr6 177309104 177309396 -5105846 + Charlie7 DNA MER1_type 24 333 -2279 21 57 0 0 chr6 177309556 177309591 -5105651 + AT_rich Low_complexity Low_complexity 1 35 0 2299 244 43 83 chr6 177310257 177311389 -5103853 - L1PA12 LINE L1 -5127 2457 48 437 352 11 11 chr6 177311600 177311776 -5103466 + MER5B DNA MER1_type 3 178 0 494 339 192 27 chr6 177311777 177312340 -5102902 + L2 LINE L2 2216 2871 -443 226 326 151 0 chr6 177312388 177312474 -5102768 - L2 LINE L2 0 3272 3174 208 296 0 0 chr6 177312522 177312566 -5102676 - L2 LINE L2 -253 3060 3017 205 363 52 22 chr6 177312869 177313004 -5102238 + L2 LINE L2 3175 3313 0 314 274 294 20 chr6 177313175 177313379 -5101863 + MIR SINE MIR 3 262 0 794 240 153 0 chr6 177314632 177314828 -5100414 + MIR SINE MIR 13 238 -24 188 329 57 0 chr6 177315943 177316013 -5099229 - L2 LINE L2 -280 2992 2919 303 336 60 0 chr6 177316574 177316690 -5098552 + L3 LINE CR1 1063 1185 -392 389 324 52 35 chr6 177317107 177317280 -5097962 + L3 LINE CR1 1192 1367 -210 190 154 64 0 chr6 177317310 177317388 -5097854 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 455 294 137 0 chr6 177317455 177317608 -5097634 + L3 LINE CR1 1380 1553 -24 195 160 100 80 chr6 177318026 177318076 -5097166 + L2 LINE L2 3222 3272 0 289 247 0 0 chr6 177318222 177318295 -5096947 + L1M4 LINE L1 2963 3035 -3111 * 371 266 130 49 chr6 177318294 177318478 -5096764 + HAL1 LINE L1 2309 2507 0 21 36 0 0 chr6 177318828 177318856 -5096386 + AT_rich Low_complexity Low_complexity 1 28 0 413 283 42 103 chr6 177319271 177319582 -5095660 + MLT1I LTR MaLR 116 407 -2 267 309 27 13 chr6 177319605 177319754 -5095488 - L1ME LINE L1 -283 5838 5688 2171 101 3 3 chr6 177319922 177320219 -5095023 + AluSg SINE Alu 1 297 -13 240 325 41 41 chr6 177320477 177320600 -5094642 - MIR3 SINE MIR -5 203 81 1723 151 7 47 chr6 177321789 177322088 -5093154 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr6 177322633 177322656 -5092586 + AT_rich Low_complexity Low_complexity 1 23 0 1531 179 47 0 chr6 177323027 177323306 -5091936 - AluJo SINE Alu -18 294 3 208 239 0 0 chr6 177323431 177323477 -5091765 + A-rich Low_complexity Low_complexity 3 48 0 38 51 0 0 chr6 177325066 177325125 -5090117 + AT_rich Low_complexity Low_complexity 1 59 0 26 50 0 0 chr6 177325340 177325380 -5089862 + AT_rich Low_complexity Low_complexity 1 40 0 386 250 62 0 chr6 177326705 177326801 -5088441 - L2 LINE L2 -33 3280 3179 201 217 22 0 chr6 177327063 177327109 -5088133 + (TA)n Simple_repeat Simple_repeat 2 48 0 431 254 78 26 chr6 177327628 177327821 -5087421 + L3 LINE CR1 1123 1325 -252 1539 22 0 0 chr6 177328006 177328187 -5087055 + L1PA4 LINE L1 5972 6152 -3 1273 172 72 23 chr6 177328205 177328496 -5086746 + MSTD LTR MaLR 75 396 0 931 218 20 0 chr6 177328496 177328698 -5086544 - L1 LINE L1 -2318 3828 3623 26 30 0 0 chr6 177328787 177328820 -5086422 + AT_rich Low_complexity Low_complexity 1 33 0 2373 124 6 8 chr6 177329714 177330077 -5085165 + THE1B LTR MaLR 1 362 -2 313 261 87 68 chr6 177330148 177330355 -5084887 - L2 LINE L2 0 3313 3103 230 355 16 40 chr6 177330674 177330709 -5084533 - L2 LINE L2 -610 2704 2670 1590 241 3 3 chr6 177330709 177331074 -5084168 + MLT1A1 LTR MaLR 1 365 0 230 355 16 40 chr6 177331074 177331162 -5084080 - L2 LINE L2 -644 2670 2584 10690 238 64 46 chr6 177331872 177332212 -5083030 - L1MC3 LINE L1 -1 8202 7870 2267 39 54 0 chr6 177332212 177332492 -5082750 + AluY SINE Alu 1 295 -16 10690 238 64 46 chr6 177332492 177334713 -5080529 - L1MC3 LINE L1 -333 7870 5692 1482 216 10 3 chr6 177334713 177335009 -5080233 - AluJo SINE Alu -14 298 1 10690 238 64 46 chr6 177335009 177338709 -5076533 - L1MC3 LINE L1 -2511 5692 1634 1812 142 11 0 chr6 177338709 177339015 -5076227 - AluSx SINE Alu 0 309 1 10690 238 64 46 chr6 177339015 177340107 -5075135 - L1MC3 LINE L1 -6569 1634 564 566 289 15 41 chr6 177340118 177340377 -5074865 - L1MC3 LINE L1 -5824 360 5 2003 141 0 0 chr6 177341412 177341703 -5073539 + AluSx SINE Alu 1 291 -21 2372 94 3 0 chr6 177341863 177342162 -5073080 + AluSp SINE Alu 1 300 -13 21 0 0 0 chr6 177342504 177342525 -5072717 + AT_rich Low_complexity Low_complexity 1 21 0 211 309 74 0 chr6 177342590 177342671 -5072571 - MIR SINE MIR -56 206 120 5297 162 26 21 chr6 177343132 177344505 -5070737 - L1MA4A LINE L1 -7 6296 4912 1733 193 6 0 chr6 177344498 177344856 -5070386 + L1MA4A LINE L1 4560 4919 -1227 * 22 70 0 0 chr6 177344893 177344936 -5070306 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 177345548 177345569 -5069673 + AT_rich Low_complexity Low_complexity 1 21 0 181 234 64 0 chr6 177346626 177346673 -5068569 - MIR SINE MIR -86 176 127 215 178 0 22 chr6 177347127 177347172 -5068070 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 608 246 56 23 chr6 177347210 177347425 -5067817 + MLT1D LTR MaLR 26 247 -258 348 279 8 8 chr6 177347613 177347742 -5067500 - L1MCb LINE L1 -3704 2860 2732 617 182 42 24 chr6 177347845 177348010 -5067232 - MLT1A2 LTR MaLR -188 186 19 415 248 26 0 chr6 177348040 177348157 -5067085 - L1MCb LINE L1 -4982 1063 944 339 358 52 26 chr6 177348797 177348990 -5066252 - L1MCb LINE L1 -5721 324 127 4016 123 148 23 chr6 177349980 177351239 -5064003 - pTR5 LTR ERV1 -143 2295 343 29 28 0 0 chr6 177351376 177351412 -5063830 + AT_rich Low_complexity Low_complexity 1 36 0 2535 174 49 72 chr6 177351485 177352182 -5063060 - L1MC3 LINE L1 0 7785 7105 22 35 0 0 chr6 177353096 177353125 -5062117 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr6 177353289 177353318 -5061924 + AT_rich Low_complexity Low_complexity 1 29 0 399 233 0 0 chr6 177353999 177354085 -5061157 - L1M4 LINE L1 -480 6499 6414 * 1190 261 119 20 chr6 177354083 177354875 -5060367 - L1M4 LINE L1 -4129 2993 2124 183 80 0 0 chr6 177354879 177354904 -5060338 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1247 279 40 30 chr6 177354915 177355758 -5059484 - L1MCc LINE L1 -4887 1536 1026 1013 296 121 12 chr6 177356160 177356649 -5058593 - L1MCc LINE L1 -5865 558 17 1099 96 0 0 chr6 177357230 177357365 -5057877 + AluSq/x SINE Alu 1 135 -178 2246 110 7 0 chr6 177357365 177357665 -5057577 + AluSq SINE Alu 1 302 -11 224 277 31 15 chr6 177358973 177359038 -5056204 + MIR SINE MIR 84 149 -113 450 247 13 63 chr6 177359404 177359562 -5055680 + MIR SINE MIR 75 224 -38 668 267 126 70 chr6 177359745 177360270 -5054972 - MER41C LTR ERV1 0 554 1 270 349 91 39 chr6 177360500 177360884 -5054358 + L2 LINE L2 2403 2806 -508 189 260 55 55 chr6 177361192 177361265 -5053977 + L2 LINE L2 3224 3296 -17 2236 113 10 3 chr6 177361829 177362139 -5053103 + AluSx SINE Alu 1 312 0 274 331 53 0 chr6 177362207 177362358 -5052884 + (CATG)n Simple_repeat Simple_repeat 2 160 0 * 353 277 13 15 chr6 177362266 177362600 -5052642 + (CA)n Simple_repeat Simple_repeat 1 333 0 522 242 28 73 chr6 177363365 177363543 -5051699 - MER20 DNA MER1_type 0 219 50 186 133 33 0 chr6 177365376 177365406 -5049836 + L3 LINE CR1 520 550 -1027 14776 45 1 2 chr6 177365555 177368140 -5047102 - L1PA5 LINE L1 -14 6140 3554 206 387 0 8 chr6 177368165 177368284 -5046958 + MIR SINE MIR 31 148 -114 769 274 32 13 chr6 177368422 177368794 -5046448 + L1ME2 LINE L1 4169 4547 -1599 418 294 41 5 chr6 177368810 177369004 -5046238 + L1ME2 LINE L1 4727 4927 -1219 228 103 0 0 chr6 177369594 177369633 -5045609 + L1ME2 LINE L1 4998 5036 -1110 248 186 98 69 chr6 177369804 177369906 -5045336 + L1MB8 LINE L1 5797 5901 -265 1228 275 38 9 chr6 177369910 177370394 -5044848 - MLT1E2 LTR MaLR 0 626 137 723 273 30 8 chr6 177370473 177370740 -5044502 + L1MB8 LINE L1 5904 6176 -2 222 147 49 29 chr6 177370761 177370863 -5044379 + (TA)n Simple_repeat Simple_repeat 1 104 0 1472 265 69 25 chr6 177370909 177371749 -5043493 + L1ME2 LINE L1 5066 5974 -196 2050 100 29 7 chr6 177371749 177372028 -5043214 + AluSc SINE Alu 1 285 -24 1472 265 69 25 chr6 177372028 177372226 -5043016 + L1ME2 LINE L1 5974 6162 -8 5368 178 12 11 chr6 177372255 177373389 -5041853 + L1MC1 LINE L1 5193 6333 0 733 286 103 26 chr6 177373617 177373994 -5041248 - LTR16C LTR ERVL -13 478 73 305 230 73 58 chr6 177374060 177374251 -5040991 + L1MC5 LINE L1 7000 7193 -768 520 263 68 56 chr6 177374360 177374877 -5040365 + L1MC5 LINE L1 7261 7783 -178 336 119 0 0 chr6 177374879 177374938 -5040304 + (TG)n Simple_repeat Simple_repeat 1 59 0 205 171 0 0 chr6 177374938 177374973 -5040269 + GA-rich Low_complexity Low_complexity 2 36 0 327 284 53 60 chr6 177375099 177375384 -5039858 + L1MEc LINE L1 41 323 -6073 531 374 35 9 chr6 177375584 177375929 -5039313 + L1MEc LINE L1 516 869 -5527 2164 36 0 0 chr6 177376238 177376486 -5038756 + AluY SINE Alu 61 308 -3 548 330 77 5 chr6 177376986 177377195 -5038047 + L3 LINE CR1 968 1191 -386 460 235 0 17 chr6 177377541 177377582 -5037660 - MLT2D LTR ERVL -1 413 373 452 47 0 16 chr6 177377582 177377646 -5037596 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 460 235 0 17 chr6 177377646 177377719 -5037523 - MLT2D LTR ERVL -41 373 301 239 250 36 0 chr6 177378102 177378186 -5037056 + MLT2D LTR ERVL 208 294 -120 28 29 0 0 chr6 177378564 177378599 -5036643 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 177378865 177378893 -5036349 + AT_rich Low_complexity Low_complexity 1 28 0 784 154 0 122 chr6 177379094 177379308 -5035934 - MER53 DNA DNA -1 188 1 1471 221 9 6 chr6 177379633 177379982 -5035260 + MLT1A1 LTR MaLR 4 353 -12 1113 167 31 73 chr6 177381669 177381923 -5033319 + MER31A LTR ERV1 181 444 -41 2261 77 47 3 chr6 177381923 177382221 -5033021 + AluY SINE Alu 1 311 0 1113 167 31 73 chr6 177382221 177382243 -5032999 + MER31A LTR ERV1 444 445 -40 2280 150 54 7 chr6 177382243 177382650 -5032592 - MSTB LTR MaLR 0 426 1 1113 167 31 73 chr6 177382650 177382689 -5032553 + MER31A LTR ERV1 445 484 -1 1882 137 52 27 chr6 177382692 177383058 -5032184 + THE1C LTR MaLR 1 375 0 307 309 107 50 chr6 177383139 177383643 -5031599 + HAL1 LINE L1 306 838 -1669 1907 132 72 29 chr6 177384342 177384691 -5030551 + THE1B LTR MaLR 1 364 0 11456 97 10 2 chr6 177384691 177386260 -5028982 + THE1B-int LTR MaLR 1 1580 0 2213 124 48 25 chr6 177386260 177386616 -5028626 + THE1B LTR MaLR 1 364 0 303 295 93 14 chr6 177387537 177387676 -5027566 + HAL1 LINE L1 1639 1788 -719 3989 200 28 25 chr6 177388668 177388692 -5026550 - L1MA9 LINE L1 -38 6274 6252 1804 123 51 91 chr6 177388692 177389043 -5026199 - MER1B DNA MER1_type 0 337 1 3989 200 28 25 chr6 177389043 177389336 -5025906 - L1MA9 LINE L1 -60 6252 5961 369 62 0 0 chr6 177389336 177389384 -5025858 + (TATG)n Simple_repeat Simple_repeat 3 50 0 3989 200 28 25 chr6 177389384 177390549 -5024693 - L1MA9 LINE L1 -351 5961 4780 1429 263 83 57 chr6 177391504 177391935 -5023307 + L1MDb LINE L1 172 635 -5908 363 60 0 0 chr6 177391935 177391985 -5023257 + (TG)n Simple_repeat Simple_repeat 1 50 0 1429 263 83 57 chr6 177391985 177392332 -5022910 + L1MDb LINE L1 635 971 -5572 834 268 13 17 chr6 177392348 177392650 -5022592 + L1MDb LINE L1 1732 2032 -4508 258 107 0 18 chr6 177392628 177392684 -5022558 + L1MDb LINE L1 2483 2537 -4003 * 1964 214 109 17 chr6 177392683 177393224 -5022018 + L1MD2 LINE L1 5762 6352 -7 182 329 92 0 chr6 177393226 177393302 -5021940 - L2 LINE L2 -36 3277 3195 323 280 73 20 chr6 177393784 177393934 -5021308 + L1MEd LINE L1 502 659 -5460 2041 136 3 34 chr6 177394262 177394585 -5020657 + AluSq SINE Alu 1 313 0 5722 237 46 11 chr6 177394615 177395783 -5019459 + L1MEd LINE L1 2208 3459 -2670 251 0 59 0 chr6 177395783 177395817 -5019425 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5722 237 46 11 chr6 177395817 177396407 -5018835 + L1MEd LINE L1 3459 4027 -2102 531 308 60 0 chr6 177396523 177396708 -5018534 - MIR SINE MIR -58 204 9 538 271 104 62 chr6 177396708 177397129 -5018113 + L1M4 LINE L1 3890 4328 -1818 252 324 48 38 chr6 177397345 177397555 -5017687 + L1MEc LINE L1 264 475 -5921 296 258 100 39 chr6 177397569 177397848 -5017394 + L1MEc LINE L1 649 944 -5452 1971 164 27 8 chr6 177397852 177398225 -5017017 + MER4D LTR ERV1 334 713 -190 710 98 16 49 chr6 177398225 177398348 -5016894 + LTR9 LTR ERV1 1 119 -493 11388 160 36 23 chr6 177398348 177400569 -5014673 + HUERS-P3b LTR ERV1 403 2652 -4766 1412 164 43 4 chr6 177400575 177400855 -5014387 - L1MC1 LINE L1 -37 6296 6006 2498 74 0 0 chr6 177401116 177401425 -5013817 + AluY SINE Alu 1 309 -2 23 0 0 0 chr6 177403632 177403655 -5011587 + AT_rich Low_complexity Low_complexity 1 23 0 6305 190 108 16 chr6 177404257 177405590 -5009652 + L1MC1 LINE L1 31 1552 -4874 1563 105 54 83 chr6 177405590 177405866 -5009376 + AluSx SINE Alu 32 299 -13 6305 190 108 16 chr6 177405866 177406209 -5009033 + L1MC1 LINE L1 1552 1862 -4564 2404 47 3 7 chr6 177406554 177406853 -5008389 + AluY SINE Alu 1 298 -13 1359 335 14 28 chr6 177407277 177408056 -5007186 - Harlequin LTR ERV1 -135 7650 6883 358 293 37 37 chr6 177408280 177408495 -5006747 - Harlequin LTR ERV1 -3305 3591 3377 2632 324 48 50 chr6 177409251 177413104 -5002138 - Harlequin LTR ERV1 -2029 5756 1498 2297 62 0 42 chr6 177413104 177413412 -5001830 + AluY SINE Alu 1 295 -16 2632 324 48 50 chr6 177413412 177413956 -5001286 - Harlequin LTR ERV1 -6287 1498 954 450 358 0 0 chr6 177414187 177414380 -5000862 - Harlequin LTR ERV1 -6815 970 778 298 263 86 34 chr6 177414620 177414795 -5000447 - Harlequin LTR ERV1 -6279 370 187 8850 228 40 20 chr6 177415578 177417338 -4997904 + L1MC1 LINE L1 1854 3577 -3047 1919 122 0 11 chr6 177417338 177417616 -4997626 + AluY SINE Alu 1 275 -36 8850 228 40 20 chr6 177417616 177420072 -4995170 + L1MC1 LINE L1 3577 6203 -421 3838 136 42 11 chr6 177420072 177420802 -4994440 - Tigger3(Golem) DNA MER2_type 0 3029 2277 650 194 0 0 chr6 177420792 177420900 -4994342 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1339 197 64 52 chr6 177420900 177421084 -4994158 + L1MC1 LINE L1 6202 6382 -231 3180 143 37 6 chr6 177421084 177421595 -4993647 + MER1A DNA MER1_type 1 527 0 1339 197 64 52 chr6 177421595 177421817 -4993425 + L1MC1 LINE L1 6382 6613 0 799 210 44 31 chr6 177421925 177422154 -4993088 + L1ME1 LINE L1 5927 6158 -8 21 0 0 0 chr6 177422283 177422304 -4992938 + AT_rich Low_complexity Low_complexity 1 21 0 283 267 186 19 chr6 177422699 177422860 -4992382 + L2 LINE L2 2606 2793 -521 319 173 53 27 chr6 177423041 177423116 -4992126 - L1ME1 LINE L1 -8 6158 6082 24 85 0 0 chr6 177423174 177423233 -4992009 + AT_rich Low_complexity Low_complexity 1 59 0 1248 94 0 26 chr6 177423234 177423425 -4991817 - L1PA13 LINE L1 -19 6144 5959 233 241 84 0 chr6 177424021 177424104 -4991138 + MLT1J1 LTR MaLR 336 425 -21 24 53 0 0 chr6 177424155 177424193 -4991049 + AT_rich Low_complexity Low_complexity 1 38 0 1276 219 34 20 chr6 177424220 177424571 -4990671 - MLT1A1 LTR MaLR 0 365 10 222 62 0 0 chr6 177424940 177424972 -4990270 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 817 116 0 0 chr6 177424976 177425088 -4990154 - AluSg/x SINE Alu -36 274 163 479 280 9 0 chr6 177426746 177426853 -4988389 - MIR SINE MIR -100 162 55 424 273 61 5 chr6 177427180 177427530 -4987712 + L1M4 LINE L1 4792 5277 -869 1095 43 0 0 chr6 177427530 177427668 -4987574 - L1PA4 LINE L1 -2 6153 6016 203 102 0 61 chr6 177427678 177427727 -4987515 + (TA)n Simple_repeat Simple_repeat 2 47 0 34 42 0 0 chr6 177427798 177427846 -4987396 + AT_rich Low_complexity Low_complexity 1 48 0 529 193 9 0 chr6 177427856 177427965 -4987277 + THE1B LTR MaLR 253 362 -2 2204 262 132 16 chr6 177427967 177428049 -4987193 + L1MC4 LINE L1 6538 6609 -1433 2506 114 0 14 chr6 177428049 177428409 -4986833 - THE1A LTR MaLR 0 355 1 2204 262 132 16 chr6 177428409 177428464 -4986778 + L1MC4 LINE L1 6609 6656 -1386 273 29 0 0 chr6 177428464 177428498 -4986744 + (TG)n Simple_repeat Simple_repeat 2 35 0 2204 262 132 16 chr6 177428498 177429388 -4985854 + L1MC4 LINE L1 6656 7686 -356 1102 249 19 14 chr6 177429388 177429806 -4985436 + L1ME2 LINE L1 2772 3191 -2955 1541 258 63 37 chr6 177429878 177430658 -4984584 + L1ME2 LINE L1 3342 4141 -2005 1018 275 61 10 chr6 177430670 177431128 -4984114 + L1ME2 LINE L1 5652 6157 -9 1688 211 130 45 chr6 177432638 177433305 -4981937 + MER50 LTR ERV1 10 733 -1 276 229 114 69 chr6 177434862 177434993 -4980249 + MLT1J LTR MaLR 306 442 -69 1392 153 28 75 chr6 177435026 177435346 -4979896 + L1PB4 LINE L1 5851 6155 -1 389 353 39 13 chr6 177436238 177436394 -4978848 - MIR3 SINE MIR -11 197 38 278 260 180 0 chr6 177436975 177437075 -4978167 + MER97b DNA MER1_type? 50 167 -886 312 298 26 18 chr6 177437314 177437428 -4977814 + MLT1K LTR MaLR 322 436 -152 1598 117 46 4 chr6 177438823 177439152 -4976090 + Tigger4(Zombi) DNA MER2_type 2 2731 0 356 40 20 0 chr6 177441057 177441107 -4974135 + (CA)n Simple_repeat Simple_repeat 2 52 0 2132 123 0 0 chr6 177441115 177441399 -4973843 - AluSx SINE Alu -28 284 1 404 320 7 26 chr6 177441593 177441746 -4973496 - L2 LINE L2 -4 3309 3160 3186 104 22 22 chr6 177442294 177442786 -4972456 + LTR22B LTR ERVK 1 492 0 250 313 23 39 chr6 177444218 177444346 -4970896 - MIR SINE MIR -59 203 78 408 40 0 0 chr6 177444464 177444514 -4970728 + (TTA)n Simple_repeat Simple_repeat 2 51 0 837 241 6 0 chr6 177444782 177444956 -4970286 + LTR28 LTR ERV1 4 178 -842 237 135 0 0 chr6 177444933 177444970 -4970272 + MER61B LTR ERV1 102 138 -287 * 824 242 210 67 chr6 177444993 177445653 -4969589 + MER52A LTR ERV1 545 1755 0 3900 205 46 15 chr6 177445653 177446349 -4968893 + MER52A-int LTR ERV1 1 731 -6360 363 44 0 0 chr6 177446349 177446394 -4968848 + (TTG)n Simple_repeat Simple_repeat 2 46 0 3900 205 46 15 chr6 177446394 177446561 -4968681 + MER52A-int LTR ERV1 731 891 -6200 1077 164 16 0 chr6 177446568 177446757 -4968485 + MER52A-int LTR ERV1 1000 1191 -5900 * 7708 139 6 11 chr6 177446753 177447985 -4967257 + MER52-int LTR ERV1 2662 3886 -3205 570 140 11 0 chr6 177447984 177448077 -4967165 + MER52-int LTR ERV1 2765 2858 -4233 * 19904 119 29 12 chr6 177448078 177451223 -4964019 + MER52-int LTR ERV1 3892 7091 0 952 264 198 70 chr6 177451232 177451944 -4963298 + MER52A LTR ERV1 668 1470 -285 363 305 23 8 chr6 177451942 177452073 -4963169 + MER52A LTR ERV1 1593 1725 -30 * 279 411 46 0 chr6 177452120 177452271 -4962971 - L2 LINE L2 0 3272 3115 1509 96 4 9 chr6 177452288 177452517 -4962725 - MER4E LTR ERV1 -2 777 550 1505 134 80 81 chr6 177452625 177453043 -4962199 - MER4B LTR ERV1 -177 602 30 2052 129 13 7 chr6 177453043 177453345 -4961897 - AluSg SINE Alu -6 304 1 1505 134 80 81 chr6 177453345 177453375 -4961867 - MER4B LTR ERV1 -749 30 1 203 357 91 14 chr6 177453422 177453565 -4961677 - L2 LINE L2 -203 3069 2916 2089 118 10 20 chr6 177453631 177453937 -4961305 - AluSg SINE Alu -6 304 2 289 337 121 51 chr6 177454123 177454959 -4960283 - L2 LINE L2 -956 2358 1465 3340 142 8 21 chr6 177456008 177456542 -4958700 - MER1A DNA MER1_type 0 527 1 2278 93 0 0 chr6 177457230 177457557 -4957685 + AluSc SINE Alu 5 331 0 362 133 44 67 chr6 177457570 177457660 -4957582 + L1MA9 LINE L1 6225 6312 0 265 323 143 12 chr6 177457693 177457854 -4957388 - MIR3 SINE MIR -3 205 24 2061 139 0 16 chr6 177458912 177459222 -4956020 + AluSx SINE Alu 1 305 -7 3051 164 14 32 chr6 177459305 177459932 -4955310 - L1MA8 LINE L1 -10 6983 6368 274 55 0 17 chr6 177459939 177459988 -4955254 - L1MC/D LINE L1 -729 5435 5390 5848 187 43 17 chr6 177460253 177461867 -4953375 - L1MA8 LINE L1 -745 6103 4614 2919 199 39 56 chr6 177461842 177462782 -4952460 - L1MA8 LINE L1 -2957 3891 2968 * 358 222 83 0 chr6 177462757 177462865 -4952377 - L1MA8 LINE L1 -4679 2170 2054 * 491 151 11 0 chr6 177462857 177462950 -4952292 - L1M2 LINE L1 -4147 2702 2609 4100 174 15 48 chr6 177462951 177463962 -4951280 - L1M1 LINE L1 -3890 2958 1985 26 0 0 0 chr6 177464729 177464755 -4950487 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr6 177464895 177464918 -4950324 + AT_rich Low_complexity Low_complexity 1 23 0 337 310 62 7 chr6 177465003 177465148 -4950094 - L1MC4a LINE L1 -1938 5870 5718 719 212 111 0 chr6 177465233 177465431 -4949811 - MER63 DNA MER1_type -377 683 464 1278 282 57 44 chr6 177465431 177466271 -4948971 + L1ME1 LINE L1 5312 6162 -4 2973 199 7 67 chr6 177467505 177467569 -4947673 - LTR8 LTR ERV1 0 691 625 2322 126 31 14 chr6 177467569 177467927 -4947315 + THE1B LTR MaLR 1 364 0 2973 199 7 67 chr6 177467927 177468597 -4946645 - LTR8 LTR ERV1 -66 625 1 1330 224 82 52 chr6 177468866 177469298 -4945944 - MER65B LTR ERV1 -2 529 111 258 81 0 0 chr6 177469298 177469335 -4945907 + (TG)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr6 177469334 177469355 -4945887 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 1330 224 82 52 chr6 177469335 177469436 -4945806 - MER65B LTR ERV1 -420 111 1 1816 158 52 0 chr6 177469723 177470053 -4945189 + MER7A DNA MER2_type 1 345 -1 1625 124 0 13 chr6 177470530 177470663 -4944579 + AluSc SINE Alu 1 131 -178 2379 100 0 0 chr6 177470663 177470972 -4944270 + AluSg SINE Alu 2 310 0 1625 124 0 13 chr6 177470972 177471064 -4944178 + AluSc SINE Alu 131 223 -86 2081 127 0 0 chr6 177471144 177471435 -4943807 + AluSg1 SINE Alu 1 291 -18 400 365 15 0 chr6 177471435 177471572 -4943670 + (TATG)n Simple_repeat Simple_repeat 3 141 0 254 281 0 0 chr6 177471575 177471664 -4943578 - L1MC4 LINE L1 -1339 6703 6615 270 0 0 0 chr6 177471678 177471708 -4943534 + (TG)n Simple_repeat Simple_repeat 1 30 0 258 197 106 0 chr6 177471855 177471921 -4943321 - MER94 DNA DNA -61 73 1 492 258 33 20 chr6 177472032 177472183 -4943059 + LTR32 LTR ERVL 15 167 -304 6985 20 0 0 chr6 177472183 177473031 -4942211 - L1P LINE L1 -1154 4992 4145 7726 21 0 0 chr6 177473031 177474113 -4941129 + L1PA3 LINE L1 5066 6147 -8 351 0 0 0 chr6 177474119 177474158 -4941084 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1255 162 92 25 chr6 177474168 177474452 -4940790 + LTR32 LTR ERVL 169 471 0 192 256 128 12 chr6 177474452 177474538 -4940704 + MIR SINE MIR 118 213 -49 22 0 0 0 chr6 177474939 177474961 -4940281 + AT_rich Low_complexity Low_complexity 1 22 0 187 359 54 0 chr6 177475282 177475374 -4939868 + L2 LINE L2 3197 3293 -20 182 292 62 0 chr6 177476956 177477004 -4938238 + L2 LINE L2 3111 3161 -111 224 188 14 0 chr6 177477166 177477235 -4938007 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 1050 139 0 0 chr6 177477246 177477471 -4937771 + (TGGA)n Simple_repeat Simple_repeat 1 225 0 209 267 203 27 chr6 177479625 177479812 -4935430 + L2 LINE L2 1942 2161 -1153 222 156 22 0 chr6 177480614 177480659 -4934583 + T-rich Low_complexity Low_complexity 3 48 0 298 235 25 0 chr6 177480665 177480746 -4934496 + HsTC2 DNA Tc2 1794 1876 -22 355 291 46 33 chr6 177480810 177480961 -4934281 - L1MC4 LINE L1 -194 7848 7696 32 0 0 0 chr6 177481063 177481095 -4934147 + AT_rich Low_complexity Low_complexity 1 32 0 254 276 11 0 chr6 177481152 177481239 -4934003 - L1MB8 LINE L1 -6 6172 6085 223 222 16 32 chr6 177481360 177481423 -4933819 + (CAGAGA)n Simple_repeat Simple_repeat 4 65 0 868 182 73 18 chr6 177481425 177481457 -4933785 - MLT2B3 LTR ERVL -8 546 517 216 0 0 0 chr6 177481457 177481481 -4933761 + (TA)n Simple_repeat Simple_repeat 2 25 0 868 182 73 18 chr6 177481481 177481787 -4933455 - MLT2B3 LTR ERVL -37 517 186 1430 128 14 0 chr6 177481787 177481998 -4933244 - AluSc SINE Alu -7 302 89 1278 71 60 0 chr6 177481998 177482182 -4933060 - MLT2A2 LTR ERVL -256 197 3 303 121 0 0 chr6 177482182 177482240 -4933002 + (GA)n Simple_repeat Simple_repeat 1 58 0 235 238 38 25 chr6 177482259 177482339 -4932903 - MLT1K LTR MaLR -157 431 351 388 298 40 0 chr6 177482449 177482600 -4932642 - MLT1K LTR MaLR -410 178 22 953 264 0 0 chr6 177482642 177482858 -4932384 - MER58A DNA MER1_type -8 216 1 1615 177 119 3 chr6 177482878 177483205 -4932037 + MLT1A1 LTR MaLR 1 365 0 914 200 84 105 chr6 177484066 177484436 -4930806 - MER57A LTR ERV1 0 403 42 1832 191 77 15 chr6 177484457 177484860 -4930382 + MSTA LTR MaLR 1 428 0 5777 163 16 109 chr6 177484861 177486660 -4928582 + MSTA-int LTR MaLR 2 1580 0 1750 190 99 0 chr6 177486660 177487044 -4928198 + MSTA LTR MaLR 1 422 -6 1931 145 40 32 chr6 177487619 177487991 -4927251 + THE1C LTR MaLR 1 375 0 306 245 66 0 chr6 177488344 177488450 -4926792 - MER103 DNA DNA -46 120 8 2052 129 3 7 chr6 177488894 177489196 -4926046 + AluSx SINE Alu 1 301 -11 3525 184 31 52 chr6 177491323 177492444 -4922798 + L1MB5 LINE L1 5069 6165 -9 1940 218 57 5 chr6 177493119 177493152 -4922090 - MLT2C2 LTR ERVL 0 464 434 267 79 0 0 chr6 177493152 177493190 -4922052 + (TG)n Simple_repeat Simple_repeat 2 39 0 1940 218 57 5 chr6 177493190 177493597 -4921645 - MLT2C2 LTR ERVL -30 434 1 278 253 60 0 chr6 177493602 177493685 -4921557 + MLT1J LTR MaLR 345 432 -79 2493 137 31 12 chr6 177495168 177495590 -4919652 + MSTB1 LTR MaLR 3 432 0 794 256 159 22 chr6 177495874 177496320 -4918922 - LTR33 LTR ERVL -1 520 14 350 236 35 6 chr6 177498385 177498559 -4916683 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 22 70 0 0 chr6 177498578 177498621 -4916621 + AT_rich Low_complexity Low_complexity 1 43 0 1052 263 20 51 chr6 177498622 177498835 -4916407 - L1M4 LINE L1 -2437 4207 3989 664 151 118 0 chr6 177498835 177498954 -4916288 - FLAM_C SINE Alu 0 133 1 1052 263 20 51 chr6 177498954 177499246 -4915996 - L1M4 LINE L1 -2655 3989 3718 744 75 0 0 chr6 177499308 177499414 -4915828 - AluY SINE Alu -1 310 205 1973 227 83 101 chr6 177499414 177500936 -4914306 - L1M4 LINE L1 -4559 2087 581 744 299 102 4 chr6 177501052 177501610 -4913632 + L1ME3A LINE L1 3368 3980 -2166 233 211 18 0 chr6 177501810 177501867 -4913375 - L1M4 LINE L1 -4843 1699 1642 1861 261 215 37 chr6 177502542 177503770 -4911472 + L1MC4 LINE L1 6459 7905 -137 553 258 105 60 chr6 177504127 177504424 -4910818 + L1ME3A LINE L1 4744 5073 -1073 843 241 10 0 chr6 177504424 177504631 -4910611 + MER3 DNA MER1_type 1 209 0 553 258 105 60 chr6 177504631 177504817 -4910425 + L1ME3A LINE L1 5073 5249 -897 760 280 128 20 chr6 177504881 177505442 -4909800 + L1ME3A LINE L1 5321 5942 -228 2406 56 0 47 chr6 177507349 177507670 -4907572 - AluY SINE Alu -5 306 1 23 33 0 0 chr6 177508338 177508368 -4906874 + AT_rich Low_complexity Low_complexity 1 30 0 312 111 0 0 chr6 177508986 177509040 -4906202 + (GA)n Simple_repeat Simple_repeat 1 54 0 287 284 35 85 chr6 177509529 177509730 -4905512 - L2 LINE L2 -14 3299 3109 1662 188 23 35 chr6 177510222 177510616 -4904626 + MLT1B LTR MaLR 1 389 -1 462 318 83 12 chr6 177510711 177511038 -4904204 + LTR16A1 LTR ERVL 60 409 -48 503 195 88 11 chr6 177511561 177511721 -4903521 - L1MC4 LINE L1 -1114 6918 6679 1773 96 0 0 chr6 177511797 177512046 -4903196 - THE1C LTR MaLR -126 249 1 9641 124 36 28 chr6 177512046 177513613 -4901629 - THE1C-int LTR MaLR 0 1580 1 2579 123 3 3 chr6 177513613 177513988 -4901254 - THE1C LTR MaLR 0 375 1 2086 198 41 63 chr6 177514006 177514613 -4900629 - LTR9 LTR ERV1 -18 594 1 27 0 0 0 chr6 177515247 177515274 -4899968 + AT_rich Low_complexity Low_complexity 1 27 0 381 198 0 0 chr6 177516033 177516114 -4899128 + (TG)n Simple_repeat Simple_repeat 2 82 0 196 326 77 54 chr6 177516582 177516843 -4898399 - L2 LINE L2 -6 3307 3041 2043 95 48 0 chr6 177517924 177518219 -4897023 + AluSp SINE Alu 1 308 0 1961 173 111 8 chr6 177518281 177518669 -4896573 - MSTA LTR MaLR 0 428 1 1823 171 0 7 chr6 177519200 177519493 -4895749 + AluJb SINE Alu 1 291 -21 308 165 89 13 chr6 177519825 177519904 -4895338 - L1MC1 LINE L1 0 6333 6249 300 205 179 0 chr6 177520090 177520207 -4895035 + L1MC4 LINE L1 4809 4946 -1200 398 176 12 0 chr6 177520213 177520298 -4894944 + GA-rich Low_complexity Low_complexity 2 87 0 1183 232 62 53 chr6 177520343 177521196 -4894046 + L1MC4 LINE L1 4987 5901 -279 230 278 0 37 chr6 177523525 177523633 -4891609 - L1M4 LINE L1 -1483 4663 4560 8464 208 13 13 chr6 177523798 177526513 -4888729 + L1PA15 LINE L1 3439 6165 0 474 279 127 0 chr6 177526549 177526648 -4888594 - MIR SINE MIR -2 260 175 487 75 38 0 chr6 177526648 177526728 -4888514 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 474 279 127 0 chr6 177526728 177526857 -4888385 - MIR SINE MIR -87 175 3 976 179 36 141 chr6 177527235 177527538 -4887704 - THE1C LTR MaLR -1 374 125 2464 72 0 3 chr6 177527538 177527845 -4887397 + AluY SINE Alu 1 306 -5 976 179 36 141 chr6 177527845 177527959 -4887283 - THE1C LTR MaLR -250 125 1 335 216 27 0 chr6 177529494 177529579 -4885663 + MLT1F1 LTR MaLR 114 200 -342 303 122 0 0 chr6 177529579 177529628 -4885614 + (CA)n Simple_repeat Simple_repeat 1 49 0 677 228 244 7 chr6 177529630 177529933 -4885309 + MLT1F1 LTR MaLR 193 567 0 2157 187 21 7 chr6 177531288 177531716 -4883526 - Tigger2a DNA MER2_type 0 434 1 2669 188 35 8 chr6 177532180 177532973 -4882269 + MER6 DNA MER2_type 1 865 0 2289 115 3 0 chr6 177533881 177534186 -4881056 + AluSx SINE Alu 1 306 -6 2279 101 10 0 chr6 177535432 177535728 -4879514 + AluSc SINE Alu 1 299 -10 22 0 0 0 chr6 177536584 177536606 -4878636 + AT_rich Low_complexity Low_complexity 1 22 0 271 214 51 20 chr6 177536616 177536714 -4878528 - L1M4 LINE L1 -1904 4242 4142 2487 216 83 32 chr6 177536716 177537790 -4877452 + L1M4 LINE L1 4282 5427 -743 * 3062 174 33 45 chr6 177537788 177537861 -4877381 - L1 LINE L1 -1446 4700 4628 3629 54 0 9 chr6 177537861 177538322 -4876920 - L1PA7 LINE L1 0 6154 5698 3062 174 33 45 chr6 177538322 177539029 -4876213 - L1 LINE L1 -1518 4628 3929 1679 182 31 21 chr6 177539057 177539715 -4875527 + L1MB8 LINE L1 4883 5627 -557 691 250 22 25 chr6 177539715 177540073 -4875169 - MSTD LTR MaLR 0 396 1 548 186 17 0 chr6 177540073 177540191 -4875051 + L1MB8 LINE L1 5623 5742 -442 1542 213 36 8 chr6 177540194 177540584 -4874658 + L1MB8 LINE L1 5778 6178 0 186 43 0 0 chr6 177540712 177540735 -4874507 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 1848 140 73 32 chr6 177541432 177541775 -4873467 - THE1B LTR MaLR -7 357 1 258 320 62 31 chr6 177541892 177541989 -4873253 + L2 LINE L2 3168 3267 -5 36 102 0 0 chr6 177542444 177542571 -4872671 + AT_rich Low_complexity Low_complexity 1 127 0 1130 300 100 20 chr6 177546153 177546643 -4868599 - MLT1H LTR MaLR -18 531 3 944 300 120 57 chr6 177546673 177547406 -4867836 - L2 LINE L2 -480 2834 2056 387 216 20 10 chr6 177547486 177547588 -4867654 - MER20 DNA MER1_type -94 125 23 736 339 62 11 chr6 177547600 177547972 -4867270 - L2 LINE L2 -1315 1999 1609 1124 234 57 78 chr6 177548567 177548990 -4866252 - MLT2D LTR ERVL 0 414 1 1453 208 108 12 chr6 177549104 177549436 -4865806 + MLT1A1 LTR MaLR 1 364 -1 2371 88 0 0 chr6 177550536 177550833 -4864409 + AluY SINE Alu 1 297 -14 319 307 22 62 chr6 177550838 177551017 -4864225 + L2 LINE L2 3141 3312 -1 328 314 57 61 chr6 177552465 177552694 -4862548 - L2 LINE L2 -9 3304 3077 215 130 0 43 chr6 177552830 177552876 -4862366 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 803 157 14 2 chr6 177552881 177553097 -4862145 - AluJb SINE Alu -39 273 5 352 356 28 6 chr6 177553184 177553364 -4861878 - L2 LINE L2 -538 2776 2593 387 0 0 0 chr6 177557964 177558007 -4857235 + (T)n Simple_repeat Simple_repeat 1 43 0 2624 236 82 25 chr6 177558372 177559125 -4856117 - L1ME1 LINE L1 -5 6161 5366 2283 128 50 39 chr6 177559224 177559584 -4855658 + THE1B LTR MaLR 1 364 0 12229 99 14 0 chr6 177559584 177561143 -4854099 + THE1B-int LTR MaLR 1 1580 0 1614 137 95 19 chr6 177561143 177561405 -4853837 + THE1B LTR MaLR 1 282 -82 938 88 0 0 chr6 177561406 177561531 -4853711 + THE1B-int LTR MaLR 219 343 -1237 569 179 77 8 chr6 177561531 177561648 -4853594 + THE1C LTR MaLR 251 375 0 5146 171 26 30 chr6 177562017 177563937 -4851305 - L1PB4 LINE L1 -2 6154 4242 2190 66 0 11 chr6 177564023 177564294 -4850948 - AluY SINE Alu -12 299 32 409 287 116 6 chr6 177565956 177566137 -4849105 - L1ME LINE L1 -424 5697 5497 335 255 73 57 chr6 177566210 177566402 -4848840 - MER117 DNA MER1_type -2 195 1 1969 227 67 66 chr6 177569507 177570447 -4844795 - L1ME1 LINE L1 -35 6200 5260 372 256 22 29 chr6 177570446 177570583 -4844659 - L1ME1 LINE L1 -3693 2522 2387 * 5937 61 24 0 chr6 177570583 177571292 -4843950 - L1PA6 LINE L1 0 6154 5429 2781 37 0 0 chr6 177571292 177571674 -4843568 + L1PA6 LINE L1 5052 5433 -721 1444 259 156 38 chr6 177571673 177572645 -4842597 - L1ME1 LINE L1 -3819 2396 1540 * 2315 106 0 0 chr6 177572645 177572947 -4842295 - AluSx SINE Alu -10 302 1 1444 259 156 38 chr6 177572947 177573461 -4841781 - L1ME1 LINE L1 -4675 1540 678 204 135 0 0 chr6 177573462 177573499 -4841743 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 323 252 111 7 chr6 177573965 177574100 -4841142 - L1ME1 LINE L1 -6193 203 55 525 285 145 0 chr6 177574160 177574367 -4840875 - MLT1D LTR MaLR 0 505 269 211 268 42 14 chr6 177574404 177574475 -4840767 - MIR3 SINE MIR -43 165 93 * 339 362 20 7 chr6 177574472 177574621 -4840621 - MER5A DNA MER1_type -32 157 7 2420 78 0 0 chr6 177575179 177575473 -4839769 + AluY SINE Alu 1 294 -17 2107 218 40 2 chr6 177575477 177575922 -4839320 + MER88 LTR ERVL 3 464 0 2200 113 61 28 chr6 177576210 177576572 -4838670 - THE1C LTR MaLR 0 375 2 1206 290 49 28 chr6 177577956 177578487 -4836755 + L1MCc LINE L1 24 565 -5858 444 294 162 42 chr6 177578538 177578847 -4836395 + L1MCc LINE L1 655 1000 -5423 1426 202 62 71 chr6 177578867 177579303 -4835939 + MLT1C LTR MaLR 34 465 -2 1389 209 51 6 chr6 177579327 177579642 -4835600 + L1MCc LINE L1 1011 1339 -5084 381 258 83 0 chr6 177579654 177579774 -4835468 + L1MCc LINE L1 1946 2075 -4866 254 190 13 101 chr6 177579982 177580061 -4835181 + L2 LINE L2 3184 3255 -17 515 286 94 31 chr6 177580575 177580661 -4834581 - L2 LINE L2 0 3313 3234 207 0 0 0 chr6 177580661 177580684 -4834558 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 515 286 94 31 chr6 177580684 177580821 -4834421 - L2 LINE L2 -79 3234 3076 26 30 0 0 chr6 177581036 177581069 -4834173 + AT_rich Low_complexity Low_complexity 1 33 0 2407 140 107 5 chr6 177581371 177581756 -4833486 - MSTA LTR MaLR 0 428 5 10199 166 18 10 chr6 177581761 177583399 -4831843 - MSTA-int LTR MaLR 0 1651 1 1975 157 71 55 chr6 177583399 177583820 -4831422 - MSTA LTR MaLR 0 428 1 1668 169 43 8 chr6 177584115 177584438 -4830804 + Tigger3(Golem) DNA MER2_type 61 3028 -1 2614 197 52 6 chr6 177584442 177585081 -4830161 - L1MA7 LINE L1 -39 6252 5554 473 254 127 37 chr6 177585111 177585300 -4829942 + MIR SINE MIR 13 218 -44 629 299 173 23 chr6 177585326 177585778 -4829464 - L2 LINE L2 -39 3274 2688 2407 142 8 21 chr6 177585778 177586158 -4829084 + THE1C LTR MaLR 1 375 0 629 299 173 23 chr6 177586158 177586365 -4828877 - L2 LINE L2 -625 2688 2513 1298 153 14 9 chr6 177586994 177587217 -4828025 + AluJo SINE Alu 86 309 -3 199 208 57 0 chr6 177587768 177587821 -4827421 + L2 LINE L2 3214 3269 -3 1648 42 0 0 chr6 177588729 177588920 -4826322 + L1PA4 LINE L1 5962 6152 -3 38 0 0 0 chr6 177588920 177588958 -4826284 + AT_rich Low_complexity Low_complexity 1 38 0 2164 159 0 0 chr6 177589466 177589800 -4825442 + MER7A DNA MER2_type 1 332 -14 1816 197 60 86 chr6 177589923 177590456 -4824786 + MLT2B1 LTR ERVL 2 520 0 1136 209 103 49 chr6 177590596 177590946 -4824296 - MLT1B LTR MaLR -21 369 1 193 146 0 36 chr6 177591058 177591113 -4824129 + (TA)n Simple_repeat Simple_repeat 2 54 0 217 290 68 91 chr6 177591133 177591385 -4823857 - L2 LINE L2 -188 3084 2839 211 250 0 0 chr6 177595124 177595168 -4820074 - L2 LINE L2 -3 3310 3267 766 303 74 19 chr6 177595920 177596244 -4818998 - L3 LINE CR1 -5 1572 1231 450 261 70 19 chr6 177596686 177596843 -4818399 - MIR SINE MIR 0 262 98 2472 103 11 19 chr6 177598369 177598736 -4816506 - THE1B LTR MaLR 0 364 1 755 255 59 31 chr6 177598840 177599145 -4816097 - MLT2B1 LTR ERVL -56 464 120 837 273 72 23 chr6 177599145 177599493 -4815749 + MLT1A1 LTR MaLR 1 365 0 588 197 8 0 chr6 177599494 177599616 -4815626 - MLT2B2 LTR ERVL -392 123 1 224 160 0 20 chr6 177599714 177599764 -4815478 + T-rich Low_complexity Low_complexity 1 49 0 229 333 149 31 chr6 177599921 177600149 -4815093 - L2 LINE L2 -49 3264 3010 3503 185 86 13 chr6 177600155 177601187 -4814055 + L1MB7 LINE L1 5066 6166 -18 2373 134 19 5 chr6 177601689 177602061 -4813181 - MER51B LTR ERV1 0 377 1 241 254 14 0 chr6 177602307 177602378 -4812864 + L1MB8 LINE L1 6080 6151 -27 2180 75 0 0 chr6 177602396 177602702 -4812540 + L1PA8 LINE L1 5757 6062 -110 1399 147 13 108 chr6 177602702 177603089 -4812153 - LTR46 LTR ERV1 -110 350 1 216 248 108 70 chr6 177603370 177603499 -4811743 + MIR SINE MIR 21 154 -108 993 223 97 23 chr6 177603769 177604069 -4811173 + MER2 DNA MER2_type 24 345 0 28 48 0 0 chr6 177604069 177604111 -4811131 + AT_rich Low_complexity Low_complexity 1 42 0 237 252 36 45 chr6 177605080 177605191 -4810051 + MIR SINE MIR 83 192 -70 543 282 109 20 chr6 177605294 177605687 -4809555 - MLT1E2 LTR MaLR -124 502 75 1921 148 10 0 chr6 177606315 177606606 -4808636 - AluSx SINE Alu -17 295 2 192 40 0 0 chr6 177606944 177606969 -4808273 + (CA)n Simple_repeat Simple_repeat 2 26 0 338 212 0 0 chr6 177607164 177607230 -4808012 + MER54B LTR ERVL 701 766 -27 180 0 0 0 chr6 177607263 177607283 -4807959 + (CAA)n Simple_repeat Simple_repeat 2 21 0 401 299 49 35 chr6 177608312 177608534 -4806708 + HAL1b LINE L1 68 238 -1110 1947 134 24 14 chr6 177608605 177608895 -4806347 - AluJb SINE Alu -19 293 1 2447 83 0 6 chr6 177609221 177609534 -4805708 - AluY SINE Alu 0 311 1 24 32 0 0 chr6 177609692 177609723 -4805519 + AT_rich Low_complexity Low_complexity 1 31 0 21 95 0 0 chr6 177610343 177610406 -4804836 + AT_rich Low_complexity Low_complexity 1 63 0 447 335 81 16 chr6 177611816 177612001 -4803241 + L2 LINE L2 2228 2424 -890 180 259 0 69 chr6 177612073 177612131 -4803111 - MIR SINE MIR -121 87 34 2097 122 16 48 chr6 177612317 177612693 -4802549 + THE1B LTR MaLR 1 364 0 314 340 87 52 chr6 177612941 177613250 -4801992 + L2 LINE L2 2953 3272 0 1092 143 59 0 chr6 177613972 177614175 -4801067 + L1PB4 LINE L1 5942 6156 0 213 121 0 0 chr6 177614407 177614440 -4800802 + (T)n Simple_repeat Simple_repeat 1 33 0 329 161 18 0 chr6 177614447 177614503 -4800739 - MER58A DNA MER1_type -19 88 32 24 32 0 0 chr6 177614640 177614671 -4800571 + AT_rich Low_complexity Low_complexity 1 31 0 22810 159 15 14 chr6 177614677 177620210 -4795032 - L1PA10 LINE L1 -19 6464 901 1509 212 26 3 chr6 177620230 177620569 -4794673 - L1PA10 LINE L1 -5525 350 4 654 276 36 48 chr6 177620974 177621224 -4794018 - MIR SINE MIR -13 249 3 230 254 173 0 chr6 177622740 177622850 -4792392 - MLT1L LTR MaLR -135 480 352 21 82 0 0 chr6 177623921 177623970 -4791272 + AT_rich Low_complexity Low_complexity 1 49 0 1996 119 14 14 chr6 177624173 177624468 -4790774 - AluSx SINE Alu -17 295 1 318 87 0 0 chr6 177624555 177624601 -4790641 + (GA)n Simple_repeat Simple_repeat 1 46 0 241 336 88 9 chr6 177624829 177624942 -4790300 - MIR SINE MIR -55 153 32 1900 138 10 7 chr6 177626314 177626435 -4788807 + AluSg SINE Alu 1 120 -190 194 0 39 0 chr6 177626435 177626461 -4788781 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1900 138 10 7 chr6 177626461 177626636 -4788606 + AluSg SINE Alu 120 298 -12 268 211 0 0 chr6 177627094 177627151 -4788091 + (TGG)n Simple_repeat Simple_repeat 3 59 0 279 0 0 0 chr6 177627159 177627190 -4788052 + (TG)n Simple_repeat Simple_repeat 2 32 0 2182 134 0 0 chr6 177627329 177627628 -4787614 + AluSx SINE Alu 3 301 -11 392 265 17 17 chr6 177629404 177629521 -4785721 - MIR SINE MIR -102 160 44 608 252 165 10 chr6 177630130 177630439 -4784803 + L1M4 LINE L1 4613 4969 -1177 396 98 12 24 chr6 177630596 177630678 -4784564 + (GA)n Simple_repeat Simple_repeat 1 81 0 191 290 130 0 chr6 177630716 177630785 -4784457 - L2 LINE L2 -89 3183 3106 5110 172 27 26 chr6 177631042 177632193 -4783049 - L1MC1 LINE L1 -1 6332 5182 190 160 40 0 chr6 177632732 177632782 -4782460 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 276 364 15 15 chr6 177632844 177632976 -4782266 - MIR3 SINE MIR -49 159 28 355 106 30 0 chr6 177633027 177633093 -4782149 + CT-rich Low_complexity Low_complexity 2 69 0 588 217 0 0 chr6 177633102 177633208 -4782034 - FRAM SINE Alu -25 151 46 23 0 0 0 chr6 177634778 177634801 -4780441 + AT_rich Low_complexity Low_complexity 1 23 0 490 234 40 40 chr6 177634894 177635018 -4780224 + MER5B DNA MER1_type 1 124 -54 1280 144 0 15 chr6 177635019 177635214 -4780028 - AluSg/x SINE Alu -22 290 99 19664 23 0 0 chr6 177636968 177640176 -4775066 + L1HS LINE L1 2948 6155 0 11157 143 82 42 chr6 177640627 177642567 -4772675 + Tigger1 DNA MER2_type 1 2049 -369 1471 170 0 16 chr6 177642567 177642820 -4772422 + AluJo SINE Alu 1 249 -63 11157 143 82 42 chr6 177642820 177643157 -4772085 + Tigger1 DNA MER2_type 2049 2371 -47 409 192 0 0 chr6 177643905 177643978 -4771264 + MER69 DNA AcHobo 2451 2523 -3 199 292 106 68 chr6 177645799 177645960 -4769282 - L3b LINE CR1 -138 1445 1279 345 312 22 0 chr6 177646814 177646952 -4768290 + L1ME2 LINE L1 5998 6138 -26 344 223 58 25 chr6 177647195 177647316 -4767926 - MER3 DNA MER1_type -3 206 82 25 0 0 0 chr6 177648240 177648265 -4766977 + AT_rich Low_complexity Low_complexity 1 25 0 370 216 20 10 chr6 177649244 177649346 -4765896 + L1M4 LINE L1 16 118 -6424 2755 251 99 20 chr6 177649356 177651311 -4763931 + L1M4 LINE L1 993 3110 -3534 303 350 37 49 chr6 177651923 177652166 -4763076 - HAL1b LINE L1 -770 578 339 551 220 0 8 chr6 177652187 177652305 -4762937 + L1MC1 LINE L1 6217 6333 0 1750 191 0 10 chr6 177652319 177652618 -4762624 + AluJb SINE Alu 6 301 -11 2171 185 54 54 chr6 177652968 177653488 -4761754 + MLT2B1 LTR ERVL 1 520 0 21 0 0 0 chr6 177653532 177653553 -4761689 + AT_rich Low_complexity Low_complexity 1 21 0 309 274 196 39 chr6 177654059 177654263 -4760979 + L1ME LINE L1 5320 5555 -2253 249 257 0 48 chr6 177654268 177654373 -4760869 + L1ME LINE L1 5596 5695 -426 33 0 0 0 chr6 177654433 177654466 -4760776 + AT_rich Low_complexity Low_complexity 1 33 0 26 82 0 0 chr6 177654625 177654686 -4760556 + AT_rich Low_complexity Low_complexity 1 61 0 628 71 31 0 chr6 177655132 177655230 -4760012 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 224 368 96 27 chr6 177655968 177656188 -4759054 - MIR SINE MIR -26 236 2 2234 110 95 0 chr6 177656917 177657243 -4757999 + LTR18A LTR ERVL 1 357 0 1407 253 89 7 chr6 177658245 177658672 -4756570 - MLT1F LTR MaLR -24 518 57 1220 209 113 10 chr6 177658680 177659086 -4756156 - MLT1C LTR MaLR -13 454 7 193 273 15 45 chr6 177660034 177660100 -4755142 + L2 LINE L2 3247 3310 -3 221 246 15 15 chr6 177662801 177662866 -4752376 + CT-rich Low_complexity Low_complexity 1 65 0 185 135 54 0 chr6 177662993 177663030 -4752212 - L2 LINE L2 -20 3252 3214 448 204 153 45 chr6 177663141 177663298 -4751944 + MIR SINE MIR 32 205 -57 231 296 110 17 chr6 177663397 177663688 -4751554 - L1M4 LINE L1 -3656 2490 2173 837 304 69 24 chr6 177663722 177664710 -4750532 - L1MEd LINE L1 -1714 4415 3384 424 288 37 20 chr6 177664834 177665129 -4750113 - L1MEd LINE L1 -2933 3196 2897 560 326 77 23 chr6 177665467 177665906 -4749336 - L1MEd LINE L1 -3536 2593 2131 289 191 43 0 chr6 177666962 177667077 -4748165 + (TA)n Simple_repeat Simple_repeat 2 121 0 228 287 23 69 chr6 177668081 177668255 -4746987 - L1MEd LINE L1 -4871 1248 1083 3183 85 48 5 chr6 177669080 177669471 -4745771 + MLT2A2 LTR ERVL 1 414 -39 200 86 29 0 chr6 177669471 177669506 -4745736 + (TA)n Simple_repeat Simple_repeat 2 37 0 3183 85 48 5 chr6 177669506 177669548 -4745694 + MLT2A2 LTR ERVL 414 453 0 15972 73 9 4 chr6 177669548 177671710 -4743532 + HERVL-A2 LTR ERVL 1 2172 -3482 2361 107 0 0 chr6 177671752 177672052 -4743190 + AluSx SINE Alu 1 300 -12 230 278 0 37 chr6 177674557 177674665 -4740577 - L1M4 LINE L1 -1483 4663 4560 8429 210 13 13 chr6 177674830 177677545 -4737697 + L1PA15 LINE L1 3439 6165 0 417 208 52 0 chr6 177677581 177677677 -4737565 - MIR SINE MIR -2 260 160 457 95 36 0 chr6 177677680 177677764 -4737478 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 308 303 72 0 chr6 177677764 177677893 -4737349 - MIR SINE MIR -63 145 3 894 137 47 21 chr6 177678271 177678461 -4736781 - THE1C LTR MaLR -1 374 180 455 133 18 2 chr6 177678467 177678554 -4736688 + THE1C LTR MaLR 88 165 -210 2370 76 0 10 chr6 177678575 177678889 -4736353 + AluY SINE Alu 1 311 0 1947 134 24 14 chr6 177679215 177679505 -4735737 + AluJb SINE Alu 1 293 -19 401 296 84 81 chr6 177679576 177679922 -4735320 - L1MEd LINE L1 -1110 1218 68 180 0 0 0 chr6 177680831 177680851 -4734391 + (TTG)n Simple_repeat Simple_repeat 2 21 0 192 40 0 0 chr6 177680855 177680880 -4734362 + (T)n Simple_repeat Simple_repeat 1 25 0 4032 201 15 24 chr6 177680880 177681750 -4733492 - MER54A LTR ERVL -18 883 20 2065 117 65 0 chr6 177681750 177682041 -4733201 + AluSx SINE Alu 1 310 -2 4032 201 15 24 chr6 177682041 177682061 -4733181 - MER54A LTR ERVL -881 20 1 1664 101 9 0 chr6 177684374 177684591 -4730651 - AluSx SINE Alu -89 223 5 37 39 0 0 chr6 177684666 177684717 -4730525 + AT_rich Low_complexity Low_complexity 1 51 0 19666 21 0 0 chr6 177687891 177691095 -4724147 + L1HS LINE L1 2948 6151 -4 249 33 0 0 chr6 177691147 177691177 -4724065 + (A)n Simple_repeat Simple_repeat 1 30 0 1951 143 10 0 chr6 177691888 177692181 -4723061 + AluSx SINE Alu 1 296 -16 537 282 109 20 chr6 177692810 177693203 -4722039 + MLT1E2 LTR MaLR 75 502 -124 237 252 36 45 chr6 177693306 177693417 -4721825 - MIR SINE MIR -70 192 83 25 51 0 0 chr6 177694386 177694425 -4720817 + AT_rich Low_complexity Low_complexity 1 39 0 986 227 97 23 chr6 177694425 177694725 -4720517 - MER2 DNA MER2_type 0 345 24 235 261 92 62 chr6 177694994 177695124 -4720118 - MIR SINE MIR -108 154 21 1894 148 37 91 chr6 177695405 177695891 -4719351 + LTR46 LTR ERV1 1 460 0 23 0 0 0 chr6 177697080 177697103 -4718139 + AT_rich Low_complexity Low_complexity 1 23 0 293 267 85 55 chr6 177697979 177698144 -4717098 + L2 LINE L2 1565 1734 -1580 550 262 128 41 chr6 177698893 177699282 -4715960 - L1MC4a LINE L1 -1908 5900 5478 203 188 0 0 chr6 177699432 177699464 -4715778 - L2 LINE L2 -241 3072 3041 1090 232 37 65 chr6 177699464 177699777 -4715465 - MLT1D LTR MaLR -2 503 208 2138 126 0 0 chr6 177699777 177700070 -4715172 - AluSx SINE Alu -19 293 1 1090 232 37 65 chr6 177700070 177700248 -4714994 - MLT1D LTR MaLR -297 208 26 1827 148 16 26 chr6 177700578 177700883 -4714359 + AluJb SINE Alu 3 304 -8 216 67 0 0 chr6 177700883 177700913 -4714329 + (CATA)n Simple_repeat Simple_repeat 3 32 0 3161 72 0 0 chr6 177703148 177703564 -4711678 - L1PA8 LINE L1 0 6172 5757 229 254 14 0 chr6 177703582 177703653 -4711589 - L1MB8 LINE L1 -27 6151 6080 2353 137 19 5 chr6 177703899 177704271 -4710971 + MER51B LTR ERV1 1 377 0 3577 183 85 13 chr6 177704762 177705801 -4709441 - L1MB7 LINE L1 -11 6173 5066 252 329 149 31 chr6 177705807 177706035 -4709207 + L2 LINE L2 3010 3264 -49 185 116 0 23 chr6 177706192 177706235 -4709007 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 588 197 8 0 chr6 177706335 177706457 -4708785 + MLT2B2 LTR ERVL 1 123 -392 813 276 72 23 chr6 177706458 177706806 -4708436 - MLT1A1 LTR MaLR 0 365 1 776 242 26 28 chr6 177706806 177707119 -4708123 + MLT2B1 LTR ERVL 120 472 -48 2567 93 11 14 chr6 177707209 177707574 -4707668 + THE1B LTR MaLR 1 364 0 450 261 70 19 chr6 177709101 177709258 -4705984 + MIR SINE MIR 98 262 0 766 303 74 19 chr6 177709700 177710024 -4705218 + L3 LINE CR1 1231 1572 -5 211 250 0 0 chr6 177710776 177710820 -4704422 + L2 LINE L2 3267 3310 -3 415 277 15 15 chr6 177715719 177715856 -4699386 + (TATATG)n Simple_repeat Simple_repeat 3 139 0 32 0 0 0 chr6 177719436 177719468 -4695774 + AT_rich Low_complexity Low_complexity 1 32 0 1157 254 59 6 chr6 177720102 177720619 -4694623 + LTR69 LTR ERVL 3 588 0 2810 19 0 0 chr6 177721079 177721392 -4693850 + AluYb8 SINE Alu 1 313 -5 26 30 0 0 chr6 177721751 177721784 -4693458 + AT_rich Low_complexity Low_complexity 1 33 0 305 337 64 30 chr6 177722445 177722647 -4692595 + L1M4 LINE L1 4942 5150 -996 257 301 88 9 chr6 177724685 177724798 -4690444 - MIR SINE MIR -10 252 131 212 346 12 25 chr6 177725146 177725227 -4690015 - L2 LINE L2 -75 3197 3118 249 318 59 12 chr6 177725549 177725634 -4689608 - MIR SINE MIR -161 101 13 260 347 56 0 chr6 177725649 177725793 -4689449 - L2 LINE L2 -660 2654 2503 5275 129 59 33 chr6 177725939 177726933 -4688309 - Tigger2 DNA MER2_type -1698 1020 1 248 295 74 21 chr6 177727622 177727717 -4687525 + L2 LINE L2 3172 3271 -1 414 258 48 81 chr6 177728451 177728637 -4686605 - MIR3 SINE MIR -3 205 26 811 307 97 27 chr6 177730507 177730960 -4684282 - L2 LINE L2 -313 3000 2516 2188 130 30 16 chr6 177733286 177733656 -4681586 + THE1C LTR MaLR 1 375 0 9398 118 44 42 chr6 177733656 177735233 -4680009 + THE1C-int LTR MaLR 1 1580 0 2619 98 8 16 chr6 177735233 177735611 -4679631 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr6 177735662 177735693 -4679549 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr6 177735805 177735834 -4679408 + AT_rich Low_complexity Low_complexity 1 29 0 290 259 0 0 chr6 177736145 177736203 -4679039 - L2 LINE L2 0 3313 3256 347 320 8 0 chr6 177736297 177736422 -4678820 + MER94 DNA DNA 9 134 0 2249 111 0 0 chr6 177736475 177736763 -4678479 - AluSx SINE Alu -22 290 3 5095 180 32 44 chr6 177737219 177738657 -4676585 + L1MC1 LINE L1 4901 6322 -11 1624 238 113 33 chr6 177739820 177740376 -4674866 - L1ME2 LINE L1 0 6233 5723 182 36 0 36 chr6 177740376 177740404 -4674838 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1624 238 113 33 chr6 177740404 177740487 -4674755 - L1ME2 LINE L1 -510 5723 5648 1752 154 63 33 chr6 177740487 177740851 -4674391 - THE1C LTR MaLR 0 375 1 1624 238 113 33 chr6 177740851 177741292 -4673950 - L1ME2 LINE L1 -585 5648 5065 2381 252 122 35 chr6 177741328 177742133 -4673109 - L1ME2 LINE L1 -1799 4416 3682 180 0 0 0 chr6 177742133 177742153 -4673089 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2381 252 122 35 chr6 177742153 177742817 -4672425 - L1ME2 LINE L1 -2533 3682 2819 849 282 67 18 chr6 177742831 177743389 -4671853 - L1ME2 LINE L1 -3522 2693 2109 370 280 90 67 chr6 177743501 177744111 -4671131 - L1ME2 LINE L1 -4305 2091 1413 331 244 51 20 chr6 177744115 177744339 -4670903 - L1ME2 LINE L1 -5204 1001 828 450 306 43 11 chr6 177744348 177744534 -4670708 - MER58C DNA MER1_type -22 193 2 343 339 93 44 chr6 177744933 177745116 -4670126 - L1ME2 LINE L1 -6068 328 137 591 171 34 0 chr6 177745120 177745546 -4669696 + L1M4b LINE L1 781 1240 -5619 430 223 165 39 chr6 177745551 177745811 -4669431 + L1 LINE L1 4034 4326 -1820 830 203 73 13 chr6 177745814 177746046 -4669196 + L1M4b LINE L1 3445 3690 -3267 1822 209 20 73 chr6 177746054 177746547 -4668695 + MLT1C LTR MaLR 1 467 0 5509 236 30 32 chr6 177746547 177747846 -4667396 + L1M4b LINE L1 3693 4987 -1970 2230 113 0 3 chr6 177747846 177748156 -4667086 + AluSg SINE Alu 1 309 -1 5509 236 30 32 chr6 177748156 177748682 -4666560 + L1M4b LINE L1 4987 5513 -1444 1644 199 22 33 chr6 177748757 177749124 -4666118 + MLT1A1 LTR MaLR 3 365 0 343 274 101 18 chr6 177749407 177749575 -4665667 + L1M4 LINE L1 2816 2997 -3149 1458 177 3 77 chr6 177750025 177750336 -4664906 + AluJb SINE Alu 1 288 -24 25 0 0 0 chr6 177750339 177750364 -4664878 + AT_rich Low_complexity Low_complexity 1 25 0 232 293 71 14 chr6 177750856 177750996 -4664246 + L1M4 LINE L1 4114 4261 -1885 266 300 146 35 chr6 177751070 177751357 -4663885 + L1ME LINE L1 361 679 -5693 282 304 23 23 chr6 177751569 177751786 -4663456 + L1ME LINE L1 761 977 -4887 237 108 0 0 chr6 177751853 177751890 -4663352 + (TG)n Simple_repeat Simple_repeat 2 38 0 372 267 43 21 chr6 177752008 177752195 -4663047 + L1ME LINE L1 1210 1400 -4984 750 257 50 90 chr6 177752198 177752607 -4662635 + L1ME LINE L1 1621 1996 -4567 2027 147 0 0 chr6 177752607 177752907 -4662335 - AluSx SINE Alu -12 300 1 750 257 50 90 chr6 177752907 177753142 -4662100 + L1ME LINE L1 1996 2239 -4324 39279 35 2 2 chr6 177753284 177758855 -4656387 + L1PA3 LINE L1 585 6155 0 12363 143 85 18 chr6 177759306 177761244 -4653998 + Tigger1 DNA MER2_type 1 2107 -311 1499 189 29 26 chr6 177761244 177761550 -4653692 + AluJo SINE Alu 1 307 -5 12363 143 85 18 chr6 177761550 177761834 -4653408 + Tigger1 DNA MER2_type 2107 2371 -47 432 192 0 0 chr6 177762582 177762655 -4652587 + MER69 DNA AcHobo 2451 2523 -3 197 292 106 68 chr6 177764476 177764637 -4650605 - L3b LINE CR1 -138 1445 1279 24 0 0 0 chr6 177765689 177765713 -4649529 + AT_rich Low_complexity Low_complexity 1 24 0 1934 100 30 60 chr6 177766092 177766392 -4648850 - AluSc SINE Alu -18 291 1 761 288 41 16 chr6 177767075 177767318 -4647924 + MIR SINE MIR 2 250 -12 212 0 0 35 chr6 177767342 177767371 -4647871 + (ATG)n Simple_repeat Simple_repeat 2 29 0 459 63 0 0 chr6 177769221 177769284 -4645958 + (TG)n Simple_repeat Simple_repeat 1 63 0 239 320 12 70 chr6 177769734 177769906 -4645336 - L2 LINE L2 -759 2555 2394 565 210 8 32 chr6 177770111 177770235 -4645007 + L2 LINE L2 3140 3260 -12 2243 69 0 46 chr6 177771332 177771637 -4643605 + AluY SINE Alu 1 291 -20 1159 257 69 162 chr6 177773475 177775360 -4639882 - L2 LINE L2 -129 3184 1426 217 160 67 13 chr6 177777954 177778029 -4637213 + (TTATA)n Simple_repeat Simple_repeat 5 83 0 225 0 0 0 chr6 177778672 177778697 -4636545 + (TTA)n Simple_repeat Simple_repeat 3 27 0 6226 67 0 0 chr6 177778697 177779477 -4635765 - L1PA7 LINE L1 -18 6136 5357 1900 144 30 3 chr6 177782039 177782338 -4632904 + AluSq SINE Alu 1 307 -6 726 253 141 40 chr6 177782450 177782836 -4632406 - Charlie7 DNA MER1_type -18 2594 2128 1506 130 97 34 chr6 177782836 177783090 -4632152 + AluSg SINE Alu 9 282 -28 189 0 0 0 chr6 177783090 177783111 -4632131 + (TC)n Simple_repeat Simple_repeat 1 21 0 1506 130 97 34 chr6 177783111 177783125 -4632117 + AluSg SINE Alu 282 294 -16 726 253 141 40 chr6 177783125 177783320 -4631922 - Charlie7 DNA MER1_type -484 2128 1954 1164 250 76 19 chr6 177783338 177783870 -4631372 + L1ME1 LINE L1 2118 2632 -3583 1686 224 61 31 chr6 177783890 177784049 -4631193 + L1ME1 LINE L1 4662 4815 -1420 4331 27 14 0 chr6 177784049 177784563 -4630679 - L1PA4 LINE L1 -6 6149 5629 1686 224 61 31 chr6 177784563 177785795 -4629447 + L1ME1 LINE L1 4815 6231 -4 1158 249 89 0 chr6 177785820 177786181 -4629061 - Charlie7 DNA MER1_type -686 1926 1534 351 297 85 0 chr6 177786676 177786794 -4628448 - MIR SINE MIR -1 261 134 46 83 0 0 chr6 177786805 177786914 -4628328 + AT_rich Low_complexity Low_complexity 1 109 0 395 330 71 5 chr6 177787575 177787772 -4627470 + MIR SINE MIR 18 227 -35 746 239 33 6 chr6 177787920 177788100 -4627142 - MER63A DNA MER1_type -25 185 1 1087 161 10 0 chr6 177788365 177788557 -4626685 - L1MA4 LINE L1 -321 5979 5786 1162 193 49 0 chr6 177788559 177788824 -4626418 + L1MA4 LINE L1 6022 6299 -1 358 254 46 86 chr6 177788997 177789194 -4626048 + L1MEd LINE L1 412 600 -5519 216 0 0 0 chr6 177789463 177789487 -4625755 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 474 288 53 30 chr6 177790128 177790337 -4624905 - MIR SINE MIR -19 243 32 330 45 0 0 chr6 177790840 177790884 -4624358 + (TG)n Simple_repeat Simple_repeat 1 44 0 3027 169 16 40 chr6 177791221 177791778 -4623464 + MLT2B3 LTR ERVL 3 546 -8 696 246 52 33 chr6 177791899 177792110 -4623132 + MIR SINE MIR 22 236 -26 2492 69 0 0 chr6 177793495 177793801 -4621441 + AluY SINE Alu 1 306 -5 2081 119 0 7 chr6 177793876 177794170 -4621072 + AluSx SINE Alu 1 292 -20 800 11 0 0 chr6 177794173 177794263 -4620979 + 5S rRNA rRNA 1 90 -31 325 327 0 26 chr6 177794609 177794722 -4620520 + Charlie2 DNA MER1_type 23 132 -2730 386 216 180 40 chr6 177794821 177795043 -4620199 + Charlie2 DNA MER1_type 1911 2163 -699 297 234 75 21 chr6 177795047 177795141 -4620101 + L1MC4a LINE L1 6477 6575 -1233 1211 198 233 65 chr6 177795194 177795418 -4619824 + L1MC4 LINE L1 7163 7348 -694 2649 26 3 0 chr6 177795418 177795725 -4619517 + AluY SINE Alu 1 308 -3 1211 198 233 65 chr6 177795725 177795850 -4619392 + L1MC4 LINE L1 7348 7451 -591 1986 144 50 29 chr6 177795850 177796232 -4619010 + MLT1B LTR MaLR 1 390 0 1211 198 233 65 chr6 177796232 177796521 -4618721 + L1MC4 LINE L1 7451 8032 -10 456 242 211 22 chr6 177796521 177797070 -4618172 + Charlie2 DNA MER1_type 2131 2783 -79 685 269 32 0 chr6 177798735 177798951 -4616291 + MER58A DNA MER1_type 1 223 -1 2194 214 38 26 chr6 177799031 177799745 -4615497 - L1ME1 LINE L1 -268 5898 5182 567 239 57 35 chr6 177800205 177800416 -4614826 - MIR SINE MIR -13 249 34 223 318 84 28 chr6 177801236 177801343 -4613899 - MIR SINE MIR -75 133 21 640 280 56 22 chr6 177803948 177804180 -4611062 - MIR SINE MIR -15 247 8 212 254 60 30 chr6 177804236 177804303 -4610939 - L2 LINE L2 -5 3308 3240 922 155 72 31 chr6 177804786 177804979 -4610263 + MER58A DNA MER1_type 24 224 0 676 312 98 55 chr6 177805243 177805772 -4609470 + L1M4 LINE L1 3364 3967 -2179 1842 168 0 3 chr6 177805772 177806064 -4609178 + AluJo SINE Alu 3 293 -19 676 312 98 55 chr6 177806064 177806349 -4608893 + L1M4 LINE L1 3967 4238 -1908 1709 166 3 7 chr6 177806391 177806686 -4608556 + AluJb SINE Alu 1 294 -18 798 213 0 0 chr6 177806872 177807097 -4608145 + (CA)n Simple_repeat Simple_repeat 1 225 0 25 65 0 0 chr6 177807468 177807514 -4607728 + AT_rich Low_complexity Low_complexity 1 46 0 488 311 31 54 chr6 177807669 177807891 -4607351 + MLT1K LTR MaLR 334 550 -38 2082 86 57 0 chr6 177808196 177808476 -4606766 + AluSc SINE Alu 1 296 -13 289 299 63 108 chr6 177808691 177809025 -4606217 + L2 LINE L2 2938 3256 -16 478 312 118 25 chr6 177809108 177809721 -4605521 + L1M4 LINE L1 3522 4191 -1955 5201 205 58 23 chr6 177809917 177810381 -4604861 + L1MB7 LINE L1 3757 4203 -1981 300 53 0 0 chr6 177810381 177810419 -4604823 + (TG)n Simple_repeat Simple_repeat 2 39 0 5201 205 58 23 chr6 177810419 177812288 -4602954 + L1MB7 LINE L1 4203 6183 -1 23 0 0 0 chr6 177814482 177814505 -4600737 + AT_rich Low_complexity Low_complexity 1 23 0 424 333 120 8 chr6 177815092 177815326 -4599916 - MIR SINE MIR 0 262 3 234 224 17 0 chr6 177815785 177815843 -4599399 + (TA)n Simple_repeat Simple_repeat 2 60 0 414 42 42 59 chr6 177816129 177816247 -4598995 + (TA)n Simple_repeat Simple_repeat 1 116 0 1043 271 153 7 chr6 177816650 177817124 -4598118 - L2 LINE L2 0 3313 2768 2552 45 0 7 chr6 177818344 177818652 -4596590 + AluY SINE Alu 1 306 -5 282 129 0 43 chr6 177818847 177818917 -4596325 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 254 358 15 0 chr6 177818928 177818995 -4596247 - MIR SINE MIR -107 101 34 267 305 84 48 chr6 177819163 177819330 -4595912 + MLT1H LTR MaLR 119 291 -258 306 310 97 13 chr6 177819378 177819533 -4595709 + MLT1H LTR MaLR 382 549 0 23 33 0 0 chr6 177820611 177820641 -4594601 + AT_rich Low_complexity Low_complexity 1 30 0 232 376 15 15 chr6 177821626 177821759 -4593483 + L3b LINE CR1 1290 1422 -161 2490 57 3 19 chr6 177822784 177823098 -4592144 - AluSp SINE Alu -4 309 1 312 260 103 27 chr6 177823107 177823253 -4591989 - L1M4 LINE L1 -1303 4843 4687 1762 189 3 0 chr6 177823288 177823585 -4591657 + AluJo SINE Alu 3 300 -12 506 266 90 28 chr6 177825133 177825310 -4589932 + MIR3 SINE MIR 21 208 0 26 64 0 0 chr6 177825414 177825461 -4589781 + AT_rich Low_complexity Low_complexity 1 47 0 232 331 107 25 chr6 177825929 177826050 -4589192 + L2 LINE L2 3137 3267 -5 215 252 81 117 chr6 177826086 177826197 -4589045 - MIR SINE MIR -128 134 28 239 365 16 0 chr6 177826295 177826421 -4588821 + L2 LINE L2 3142 3269 -3 329 299 163 9 chr6 177826460 177826681 -4588561 - L1M4 LINE L1 -2660 3486 3232 1742 170 128 28 chr6 177826682 177826755 -4588487 - MSTA LTR MaLR 0 428 364 2120 39 0 0 chr6 177826755 177827012 -4588230 - L1PA4 LINE L1 -2 6153 5897 1742 170 128 28 chr6 177827012 177827327 -4587915 - MSTA LTR MaLR -64 364 1 4328 167 151 22 chr6 177827327 177827447 -4587795 - THE1-int LTR MaLR 0 1580 1477 1872 154 34 10 chr6 177827447 177827745 -4587497 + AluSx SINE Alu 1 305 -7 4328 167 151 22 chr6 177827745 177828868 -4586374 - THE1-int LTR MaLR -103 1477 98 306 192 26 39 chr6 177829678 177829756 -4585486 + L1MC4a LINE L1 5901 5977 -1831 303 326 82 83 chr6 177829799 177830410 -4584832 + L1MEd LINE L1 91 700 -5505 249 33 0 0 chr6 177830503 177830533 -4584709 + (GA)n Simple_repeat Simple_repeat 2 31 0 481 329 17 9 chr6 177830772 177831003 -4584239 + L1MEd LINE L1 1588 1820 -4576 259 277 0 15 chr6 177831167 177831232 -4584010 - L2 LINE L2 -85 3228 3165 207 288 17 0 chr6 177831363 177831422 -4583820 - L2 LINE L2 -40 3232 3173 25 0 0 0 chr6 177831706 177831731 -4583511 + AT_rich Low_complexity Low_complexity 1 25 0 218 228 76 54 chr6 177832364 177832456 -4582786 - L2 LINE L2 -10 3262 3169 270 0 0 0 chr6 177833320 177833350 -4581892 + (CA)n Simple_repeat Simple_repeat 2 31 0 833 307 20 4 chr6 177834068 177834312 -4580930 + MIR SINE MIR 11 258 -4 22 35 0 0 chr6 177834322 177834351 -4580891 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 177834529 177834553 -4580689 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 177835107 177835136 -4580106 + AT_rich Low_complexity Low_complexity 1 29 0 1800 130 18 25 chr6 177835167 177835473 -4579769 - AluJb SINE Alu 0 304 1 504 321 55 45 chr6 177835885 177836265 -4578977 + L2 LINE L2 2572 2955 -359 184 138 0 0 chr6 177836276 177836305 -4578937 + L2 LINE L2 3285 3313 0 265 267 13 93 chr6 177836321 177836471 -4578771 - L2 LINE L2 -8 3305 3168 520 349 63 15 chr6 177836521 177836916 -4578326 + ERVL LTR ERVL 1186 1599 -4165 1808 185 61 16 chr6 177836963 177837342 -4577900 + MSTD LTR MaLR 1 396 0 5586 251 76 24 chr6 177837344 177838991 -4576251 + MSTD-int LTR MaLR 2 1734 -1 2067 185 21 18 chr6 177838992 177839376 -4575866 + MSTD LTR MaLR 1 385 -11 865 287 31 27 chr6 177839386 177839679 -4575563 + ERVL LTR ERVL 1651 1944 -3820 341 147 31 100 chr6 177839714 177839841 -4575401 - Alu SINE Alu 0 302 244 593 247 36 18 chr6 177839849 177840015 -4575227 + ERVL LTR ERVL 2046 2214 -3550 210 286 0 0 chr6 177840040 177840096 -4575146 - L2 LINE L2 -312 3001 2946 378 259 44 63 chr6 177840798 177840956 -4574286 + MLT1K LTR MaLR 368 522 -66 205 204 204 0 chr6 177841113 177841162 -4574080 + L3b LINE CR1 1278 1336 -247 362 279 0 0 chr6 177841221 177841300 -4573942 + MIR3 SINE MIR 101 179 -29 1030 251 39 54 chr6 177841960 177842157 -4573085 - MER119 DNA MER1_type -254 329 138 192 77 0 0 chr6 177842157 177842183 -4573059 + (TA)n Simple_repeat Simple_repeat 1 26 0 1030 251 39 54 chr6 177842183 177842319 -4572923 - MER119 DNA MER1_type -445 138 1 1130 223 76 107 chr6 177842768 177842856 -4572386 - L1MC4 LINE L1 -1 8041 7952 1184 200 115 21 chr6 177842856 177843186 -4572056 + MLT1A1 LTR MaLR 2 362 -3 1130 223 76 107 chr6 177843186 177843276 -4571966 - L1MC4 LINE L1 -90 7952 7861 261 57 0 0 chr6 177843276 177843311 -4571931 + (CA)n Simple_repeat Simple_repeat 1 35 0 1130 223 76 107 chr6 177843311 177843746 -4571496 - L1MC4 LINE L1 -181 7861 7446 923 233 159 16 chr6 177843836 177844150 -4571092 - L1MC4 LINE L1 -1017 7025 6667 228 67 0 0 chr6 177844150 177844180 -4571062 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 22 0 0 0 chr6 177844189 177844211 -4571031 + AT_rich Low_complexity Low_complexity 1 22 0 14372 59 1 3 chr6 177844215 177845989 -4569253 + HERVK9 LTR ERVK 1017 2786 -3130 15076 69 8 1 chr6 177845989 177847898 -4567344 + HERVK9 LTR ERVK 3711 5634 -282 2142 61 21 11 chr6 177847994 177848273 -4566969 + HERVK9 LTR ERVK 5635 5916 0 3631 97 6 16 chr6 177848273 177848789 -4566453 + MER9 LTR ERVK 1 511 0 941 245 21 27 chr6 177848790 177849142 -4566100 - L1MC4a LINE L1 -1191 6617 6355 1825 256 27 20 chr6 177849144 177849703 -4565539 - L1ME2 LINE L1 -31 6133 5571 1996 130 77 14 chr6 177850121 177850474 -4564768 - THE1C LTR MaLR 0 375 1 1314 170 4 8 chr6 177851058 177851293 -4563949 + Tigger1 DNA MER2_type 1 234 -2184 5541 156 27 7 chr6 177851302 177852265 -4562977 + Tigger1 DNA MER2_type 337 1318 -1100 225 143 0 0 chr6 177852269 177852304 -4562938 + Alu SINE Alu 134 168 -135 3242 146 21 31 chr6 177852307 177852687 -4562555 + Tigger1 DNA MER2_type 1847 2220 -198 2120 110 0 36 chr6 177852687 177852996 -4562246 - AluSg SINE Alu -10 300 3 3242 146 21 31 chr6 177852996 177853189 -4562053 + Tigger1 DNA MER2_type 2220 2414 -4 226 300 57 0 chr6 177853242 177853312 -4561930 - L2 LINE L2 -85 3228 3155 933 119 205 11 chr6 177854645 177854830 -4560412 - MSTB1 LTR MaLR -4 428 208 268 173 0 0 chr6 177854828 177854880 -4560362 - MSTB1 LTR MaLR -404 53 2 * 2182 251 98 88 chr6 177855383 177856435 -4558807 + L2 LINE L2 1573 2634 -680 680 294 101 40 chr6 177856687 177857142 -4558100 - L1M4 LINE L1 -2577 3569 3087 440 330 125 13 chr6 177857522 177857834 -4557408 + L1ME4a LINE L1 5569 5915 -206 21 57 0 0 chr6 177858334 177858369 -4556873 + AT_rich Low_complexity Low_complexity 1 35 0 612 154 13 121 chr6 177859119 177859293 -4555949 + L1PA15 LINE L1 6010 6165 0 250 271 82 53 chr6 177859577 177859821 -4555421 + L2 LINE L2 139 389 -2925 416 325 51 31 chr6 177861240 177861495 -4553747 + HAL1b LINE L1 256 515 -833 231 167 62 0 chr6 177861495 177861543 -4553699 + LTR67 LTR ERVL 3 53 -504 1015 248 143 37 chr6 177861715 177862147 -4553095 + L2 LINE L2 2834 3311 -2 295 324 88 7 chr6 177862307 177862455 -4552787 + L3 LINE CR1 687 846 -731 981 311 77 11 chr6 177862468 177862908 -4552334 + L2 LINE L2 2030 2498 -816 4018 144 84 26 chr6 177862912 177863758 -4551484 + MER4D LTR ERV1 4 609 -1 274 324 123 0 chr6 177863762 177863932 -4551310 + L2 LINE L2 2500 2690 -624 471 274 91 113 chr6 177863949 177864401 -4550841 + L2 LINE L2 2866 3307 -6 205 281 18 0 chr6 177864407 177864464 -4550778 + GA-rich Low_complexity Low_complexity 3 60 0 314 379 66 9 chr6 177864487 177864714 -4550528 + L3 LINE CR1 897 1136 -441 1648 184 20 14 chr6 177864916 177865209 -4550033 + AluJb SINE Alu 1 295 -17 734 302 85 7 chr6 177866460 177866765 -4548477 - MER102b DNA MER1_type -11 330 2 189 189 27 0 chr6 177868488 177868525 -4546717 - MER5A DNA MER1_type -1 188 151 17836 94 26 34 chr6 177868930 177869800 -4545442 + Charlie3 DNA MER1_type 53 929 -1777 2219 104 10 3 chr6 177869800 177870097 -4545145 + AluSg SINE Alu 1 299 -11 17836 94 26 34 chr6 177870097 177870205 -4545037 + Charlie3 DNA MER1_type 929 1036 -1670 2378 84 0 3 chr6 177870205 177870503 -4544739 - AluSq SINE Alu -15 298 2 17836 94 26 34 chr6 177870503 177872199 -4543043 + Charlie3 DNA MER1_type 1036 2706 0 235 308 51 13 chr6 177872200 177872278 -4542964 + MIR SINE MIR 32 112 -150 225 0 0 0 chr6 177872640 177872665 -4542577 + (A)n Simple_repeat Simple_repeat 1 25 0 272 216 67 18 chr6 177872718 177872854 -4542388 - L2 LINE L2 -5 3308 3125 1185 131 5 0 chr6 177873070 177873269 -4541973 + L1P5 LINE L1 1 200 -6663 14163 151 68 13 chr6 177873272 177875295 -4539947 + L1P5 LINE L1 637 2545 -4322 1558 188 43 0 chr6 177875295 177875572 -4539670 + AluSx SINE Alu 1 289 -23 14163 151 68 13 chr6 177875572 177879068 -4536174 + L1P5 LINE L1 2545 6497 -370 189 94 0 0 chr6 177879128 177879160 -4536082 + (TA)n Simple_repeat Simple_repeat 2 33 0 193 167 37 0 chr6 177879934 177879988 -4535254 + GA-rich Low_complexity Low_complexity 4 59 0 236 254 0 30 chr6 177880050 177880117 -4535125 + MLT1L LTR MaLR 485 549 -66 555 305 94 62 chr6 177880414 177880798 -4534444 - L2 LINE L2 -14 3299 2904 197 297 257 30 chr6 177880951 177881153 -4534089 + MIR SINE MIR 2 249 -13 185 0 0 39 chr6 177881876 177881902 -4533340 + (CATCC)n Simple_repeat Simple_repeat 5 29 0 1797 155 6 40 chr6 177882740 177883063 -4532179 + AluJo SINE Alu 1 312 0 296 214 12 48 chr6 177884385 177884469 -4530773 + L1ME1 LINE L1 92 172 -6224 2572 253 115 32 chr6 177884491 177884888 -4530354 + L1ME1 LINE L1 3997 4360 -1871 4889 152 42 42 chr6 177884888 177885857 -4529385 + LTR5 LTR ERVK 1 969 0 2572 253 115 32 chr6 177885857 177885890 -4529352 + L1ME1 LINE L1 4360 4389 -1842 2457 42 0 39 chr6 177885890 177886198 -4529044 + AluY SINE Alu 1 296 -15 2572 253 115 32 chr6 177886198 177887201 -4528041 + L1ME1 LINE L1 4389 5548 -683 1300 254 51 31 chr6 177887235 177887624 -4527618 + L1ME1 LINE L1 5834 6230 -5 244 351 53 12 chr6 177890741 177890986 -4524256 - L1MC4a LINE L1 -1875 5933 5679 213 233 0 0 chr6 177891981 177892024 -4523218 + MIR SINE MIR 158 200 -62 1848 256 83 13 chr6 177892752 177893364 -4521878 - L1ME1 LINE L1 -80 6086 5432 925 264 45 31 chr6 177893376 177893729 -4521513 - L1MB7 LINE L1 -10 6672 6315 709 142 123 7 chr6 177893740 177893895 -4521347 - L1MA4A LINE L1 -2 6301 6129 * 12070 185 39 35 chr6 177893892 177897151 -4518091 - L1 LINE L1 -1194 5654 2375 2323 247 97 27 chr6 177897149 177898614 -4516628 - L1MB7 LINE L1 -357 6307 4639 * 1060 271 47 8 chr6 177898685 177899047 -4516195 - L1MB7 LINE L1 -2281 4363 3988 286 320 20 20 chr6 177899362 177899559 -4515683 - L1MB7 LINE L1 -6309 233 37 2368 232 103 22 chr6 177899623 177900125 -4515117 + Charlie1 DNA MER1_type 1 591 -2170 2288 111 0 0 chr6 177900125 177900431 -4514811 - AluSg SINE Alu -4 306 1 2368 232 103 22 chr6 177900431 177900711 -4514531 + Charlie1 DNA MER1_type 591 847 -1914 682 230 124 11 chr6 177900723 177900988 -4514254 + L2 LINE L2 1527 1821 -1493 792 272 163 14 chr6 177902086 177902443 -4512799 + L1ME1 LINE L1 5707 6116 -50 429 304 55 51 chr6 177902482 177902699 -4512543 - MIR SINE MIR -18 244 27 3738 194 25 6 chr6 177902887 177903597 -4511645 + MER44D DNA MER2_type 10 605 0 21 36 0 0 chr6 177904373 177904401 -4510841 + AT_rich Low_complexity Low_complexity 1 28 0 5625 136 35 21 chr6 177905532 177906479 -4508763 + Tigger1 DNA MER2_type 1 960 -1458 1313 148 46 0 chr6 177906483 177906720 -4508522 - L1MB3 LINE L1 -217 5966 5719 * 5929 222 42 21 chr6 177906716 177908423 -4506819 + L1 LINE L1 3452 5193 -953 2957 90 37 9 chr6 177908431 177908863 -4506379 + MLT2A1 LTR ERVL 1 444 0 43691 71 13 8 chr6 177908863 177914488 -4500754 + HERVL-A1-A1 LTR ERVL 1 5654 0 3011 94 18 14 chr6 177914488 177914879 -4500363 + MLT2A1 LTR ERVL 1 396 -48 261 0 0 0 chr6 177914879 177914908 -4500334 + (TG)n Simple_repeat Simple_repeat 2 30 0 3011 94 18 14 chr6 177914908 177914950 -4500292 + MLT2A1 LTR ERVL 396 436 -8 583 188 7 0 chr6 177914957 177915095 -4500147 + L1P LINE L1 5205 5343 -803 * 799 89 25 25 chr6 177915093 177915251 -4499991 + L1PA16 LINE L1 6023 6157 -9 202 341 56 34 chr6 177915490 177915669 -4499573 + L2 LINE L2 2694 2876 -438 904 214 12 0 chr6 177917185 177917358 -4497884 - MER5A DNA MER1_type -1 188 14 22 0 0 0 chr6 177917681 177917703 -4497539 + AT_rich Low_complexity Low_complexity 1 22 0 1573 151 60 11 chr6 177917846 177918130 -4497112 - MER7A DNA MER2_type 0 346 51 5581 184 17 10 chr6 177918663 177919818 -4495424 + L1MA4 LINE L1 3243 4405 -1741 2779 177 10 0 chr6 177919845 177920198 -4495044 - L1PB4 LINE L1 -12 6144 5783 246 62 0 0 chr6 177920198 177920230 -4495012 + (TG)n Simple_repeat Simple_repeat 2 33 0 2779 177 10 0 chr6 177920230 177920362 -4494880 - L1PB4 LINE L1 -373 5783 5654 * 5414 151 52 14 chr6 177920359 177922161 -4493081 + L1MA4 LINE L1 4413 6291 -9 25 31 0 0 chr6 177922161 177922193 -4493049 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 177922382 177922404 -4492838 + AT_rich Low_complexity Low_complexity 1 22 0 1624 148 10 21 chr6 177924249 177924539 -4490703 + AluSx SINE Alu 1 287 -25 294 60 104 104 chr6 177924945 177925012 -4490230 - L1MA6 LINE L1 0 6300 6237 1913 145 31 0 chr6 177925247 177925537 -4489705 - AluSx SINE Alu -11 301 3 240 143 0 0 chr6 177925562 177925604 -4489638 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 336 129 16 0 chr6 177926739 177926801 -4488441 + L1PA7 LINE L1 6089 6151 -3 2669 39 7 0 chr6 177927219 177927527 -4487715 - AluY SINE Alu -1 310 1 704 223 25 40 chr6 177928294 177928481 -4486761 + L1MB4 LINE L1 5982 6167 -13 186 43 0 0 chr6 177928481 177928504 -4486738 + (TG)n Simple_repeat Simple_repeat 1 23 0 704 223 25 40 chr6 177928504 177928518 -4486724 + L1MB4 LINE L1 6167 6180 0 255 61 0 0 chr6 177929430 177929463 -4485779 + (CA)n Simple_repeat Simple_repeat 2 34 0 6868 204 44 16 chr6 177930116 177931677 -4483565 + L1MC3 LINE L1 5224 5397 -749 2247 235 72 69 chr6 177932636 177933804 -4481438 - L1MC5 LINE L1 -81 7880 6710 2235 105 0 0 chr6 177933928 177934233 -4481009 - AluY SINE Alu -6 305 1 24 32 0 0 chr6 177934397 177934428 -4480814 + AT_rich Low_complexity Low_complexity 1 31 0 464 286 70 90 chr6 177935101 177935444 -4479798 + L3 LINE CR1 1131 1466 -111 185 250 36 36 chr6 177936070 177936126 -4479116 + L2 LINE L2 3258 3313 0 2128 220 57 28 chr6 177936883 177937429 -4477813 + MER68 LTR ERV1 1 562 0 7337 96 8 6 chr6 177938730 177939920 -4475322 + L1MA1 LINE L1 5101 6293 -9 26 0 0 0 chr6 177939921 177939947 -4475295 + AT_rich Low_complexity Low_complexity 1 26 0 238 250 12 25 chr6 177939949 177940029 -4475213 + MIR SINE MIR 97 175 -87 1010 147 30 10 chr6 177940494 177940692 -4474550 + Tigger2 DNA MER2_type 1 202 -2516 737 185 52 40 chr6 177940668 177940841 -4474401 + Tigger2 DNA MER2_type 2544 2718 0 * 2270 96 3 0 chr6 177941467 177941760 -4473482 + AluSx SINE Alu 1 294 -18 191 296 0 0 chr6 177942559 177942603 -4472639 - L2 LINE L2 -5 3308 3265 3635 52 0 0 chr6 177942648 177943093 -4472149 + L1PA5 LINE L1 5577 6021 -133 992 41 0 0 chr6 177943447 177943568 -4471674 + L1PA5 LINE L1 6028 6148 -6 357 374 41 26 chr6 177943649 177943991 -4471251 - L2 LINE L2 -793 2521 2175 259 243 40 81 chr6 177944240 177944269 -4470973 + MLT1E2 LTR MaLR 1 30 -624 2213 124 14 11 chr6 177944269 177944623 -4470619 + THE1A LTR MaLR 1 355 0 259 243 40 81 chr6 177944623 177944667 -4470575 + MLT1E2 LTR MaLR 30 71 -583 1777 244 110 4 chr6 177944716 177945188 -4470054 + MLT1E2 LTR MaLR 103 624 -2 1777 132 122 43 chr6 177945389 177945547 -4469695 + MSTA LTR MaLR 30 174 -254 2401 78 0 0 chr6 177945547 177945843 -4469399 + AluY SINE Alu 1 296 -15 1777 132 122 43 chr6 177945843 177946054 -4469188 + MSTA LTR MaLR 174 428 0 451 247 201 7 chr6 177946273 177946427 -4468815 + MLT1E2 LTR MaLR 105 288 -338 635 187 0 0 chr6 177946598 177946705 -4468537 + FLAM_C SINE Alu 1 107 -36 780 203 22 79 chr6 177947402 177947629 -4467613 + MER20 DNA MER1_type 6 219 0 344 220 22 0 chr6 177947807 177947898 -4467344 + GA-rich Low_complexity Low_complexity 3 95 0 2005 135 7 7 chr6 177948217 177948513 -4466729 + AluSx SINE Alu 1 296 -16 414 214 21 69 chr6 177949554 177949699 -4465543 + L1MC/D LINE L1 2188 2325 -3821 * 3731 209 46 8 chr6 177949697 177951131 -4464111 + L1MC/D LINE L1 4123 5602 -731 218 311 61 72 chr6 177951219 177951399 -4463843 - L2 LINE L2 -451 2863 2686 1585 221 70 23 chr6 177951443 177951926 -4463316 + L1ME3A LINE L1 5524 6029 -141 249 304 152 0 chr6 177951928 177952020 -4463222 - MIR SINE MIR -111 151 46 194 339 55 22 chr6 177952284 177952429 -4462813 - MIR SINE MIR -13 249 32 2592 46 0 3 chr6 177952604 177952908 -4462334 - AluY SINE Alu -8 303 1 3010 161 9 6 chr6 177952943 177953470 -4461772 + Tigger7 DNA MER2_type 8 536 -1951 810 240 54 31 chr6 177953532 177953849 -4461393 + MER33 DNA MER1_type 1 324 0 276 104 0 21 chr6 177954101 177954149 -4461093 + MLT1A1 LTR MaLR 1 47 -318 958 144 6 6 chr6 177954615 177954775 -4460467 + MLT1B LTR MaLR 1 160 -230 681 134 87 40 chr6 177955380 177955529 -4459713 + MER82 DNA MER2_type 1 156 -497 451 257 53 0 chr6 177955541 177955654 -4459588 + MER82 DNA MER2_type 535 653 0 416 256 74 25 chr6 177956863 177956984 -4458258 + MIR SINE MIR 42 168 -94 772 144 0 11 chr6 177957227 177957464 -4457778 + AluJb SINE Alu 1 300 -12 289 290 113 36 chr6 177960265 177960486 -4454756 + L2 LINE L2 1742 1979 -1335 236 280 103 19 chr6 177960533 177960640 -4454602 + L2 LINE L2 1896 2011 -1303 259 327 133 39 chr6 177960952 177961472 -4453770 + L2 LINE L2 2040 2608 -706 307 308 38 8 chr6 177961697 177961830 -4453412 + MLT1L LTR MaLR 475 611 -4 206 347 157 41 chr6 177963623 177963966 -4451276 - L2 LINE L2 -339 2975 2593 1118 277 97 28 chr6 177964056 177964802 -4450440 + L2 LINE L2 2456 3313 0 1286 182 48 84 chr6 177965858 177966237 -4449005 + MLT1A1 LTR MaLR 1 365 0 24 32 0 0 chr6 177967430 177967461 -4447781 + AT_rich Low_complexity Low_complexity 1 31 0 682 266 36 10 chr6 177967680 177967872 -4447370 - MIR SINE MIR -13 249 53 540 169 118 15 chr6 177967981 177968117 -4447125 + MLT1D LTR MaLR 7 156 -349 2854 173 59 5 chr6 177968131 177968692 -4446550 + ERVL-C1 LTR ERVL 4493 5083 -681 1005 205 8 43 chr6 177968701 177968959 -4446283 + MER76 LTR ERV 8 256 -432 552 280 103 15 chr6 177968993 177969264 -4445978 + MER76 LTR ERV 360 654 -34 2622 201 58 16 chr6 177969270 177969912 -4445330 + ERVL-C1 LTR ERVL 5082 5750 -14 625 222 35 12 chr6 177969912 177970083 -4445159 + MLT2C1 LTR ERVL 2 176 -221 * 1012 211 130 53 chr6 177969993 177970386 -4444856 + MLT1D LTR MaLR 83 505 0 1367 209 24 62 chr6 177970408 177970863 -4444379 + LTR56 LTR ERV1 8 445 0 224 267 27 27 chr6 177971721 177971796 -4443446 + L2 LINE L2 3189 3263 -50 2398 93 10 0 chr6 177972886 177973196 -4442046 - AluSp SINE Alu 0 313 1 354 311 260 5 chr6 177973342 177973538 -4441704 + MIR SINE MIR 7 252 -10 611 230 75 19 chr6 177974853 177975014 -4440228 - MIR SINE MIR -79 183 14 210 235 0 39 chr6 177975086 177975137 -4440105 - L2 LINE L2 -1 3312 3264 2427 67 0 0 chr6 177975218 177975517 -4439725 + AluY SINE Alu 1 299 -12 6786 63 9 3 chr6 177976629 177978067 -4437175 + L1PA7 LINE L1 4706 6153 -1 1193 257 69 10 chr6 177978627 177979035 -4436207 + L1MC4a LINE L1 6530 6961 -847 246 243 21 62 chr6 177979043 177979187 -4436055 + L1MC4 LINE L1 7012 7149 -893 375 290 69 8 chr6 177979294 177979425 -4435817 - L1MC4 LINE L1 -792 7250 7112 1028 262 54 9 chr6 177979457 177979793 -4435449 - L1MC4 LINE L1 -998 7044 6694 1012 274 108 41 chr6 177979914 177980663 -4434579 - L1MC4a LINE L1 -1543 6265 5467 342 213 38 81 chr6 177980677 177980837 -4434405 - L1MC4a LINE L1 -2401 5407 5255 306 220 99 11 chr6 177980846 177980937 -4434305 - L1MC4a LINE L1 -895 5251 5153 24 32 0 0 chr6 177980961 177980992 -4434250 + AT_rich Low_complexity Low_complexity 1 31 0 282 314 54 18 chr6 177981105 177981382 -4433860 - L1MC4a LINE L1 -1038 5108 4822 1887 157 33 30 chr6 177982859 177983222 -4432020 - THE1B LTR MaLR 0 364 1 183 205 0 0 chr6 177983829 177983868 -4431374 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 506 269 33 6 chr6 177984379 177984561 -4430681 + L1MC4 LINE L1 7210 7396 -646 489 298 46 0 chr6 177984688 177984819 -4430423 - MIR SINE MIR -106 156 20 1650 170 42 28 chr6 177985358 177985716 -4429526 - MLT1A1 LTR MaLR 0 365 3 321 257 48 0 chr6 177985745 177985850 -4429392 + L1MC4a LINE L1 7166 7275 -533 1214 286 94 29 chr6 177985875 177986190 -4429052 + L2 LINE L2 2420 2713 -600 1651 193 3 3 chr6 177986190 177986486 -4428756 + AluJo SINE Alu 3 298 -14 1214 286 94 29 chr6 177986486 177986999 -4428243 + L2 LINE L2 2713 3313 0 506 261 96 6 chr6 177988272 177988429 -4426813 + MIR SINE MIR 80 250 -12 2641 77 6 6 chr6 177990721 177991070 -4424172 + THE1A LTR MaLR 5 353 -2 286 302 10 10 chr6 177991152 177991248 -4423994 - MIR SINE MIR -8 254 159 541 170 14 109 chr6 177992245 177992392 -4422850 + MER69 DNA AcHobo 4 136 -2390 29 0 0 0 chr6 177992786 177992815 -4422427 + AT_rich Low_complexity Low_complexity 1 29 0 281 277 8 67 chr6 177993504 177993623 -4421619 + L1M4 LINE L1 5691 5802 -352 252 247 39 39 chr6 177993990 177994067 -4421175 + L2 LINE L2 3196 3272 0 198 343 0 70 chr6 177994075 177994247 -4420995 + L2 LINE L2 2200 2359 -955 328 336 48 8 chr6 177995685 177995810 -4419432 + L2 LINE L2 3137 3266 -6 1122 174 43 110 chr6 177996997 177997370 -4417872 + MER7A DNA MER2_type 1 346 0 453 116 0 0 chr6 177997794 177997863 -4417379 + (TA)n Simple_repeat Simple_repeat 1 69 0 7374 34 11 0 chr6 177997864 177998957 -4416285 - L1PA5 LINE L1 -11 6143 5047 8389 42 1 9 chr6 177998958 178000003 -4415239 + L1P LINE L1 3848 4885 -1261 2435 61 40 0 chr6 178000003 178000299 -4414943 + AluY SINE Alu 1 308 -3 8389 42 1 9 chr6 178000299 178000348 -4414894 + L1P LINE L1 4885 4933 -1213 216 316 35 86 chr6 178000541 178000715 -4414527 + MIR3 SINE MIR 16 180 -28 245 238 25 75 chr6 178000847 178000927 -4414315 - MLT1K LTR MaLR -10 578 503 * 334 268 55 16 chr6 178000923 178001050 -4414192 + MLT1I LTR MaLR 276 407 -2 1979 127 31 3 chr6 178002119 178002410 -4412832 - AluSx SINE Alu -13 299 1 1949 152 7 7 chr6 178003100 178003402 -4411840 + AluJb SINE Alu 1 302 -10 224 331 72 64 chr6 178003520 178004251 -4410991 + L2 LINE L2 2241 2977 -337 353 241 36 24 chr6 178004384 178004467 -4410775 + L2 LINE L2 3169 3252 -20 2396 103 0 0 chr6 178004671 178004981 -4410261 + AluSg SINE Alu 1 310 0 21 57 0 0 chr6 178006632 178006667 -4408575 + AT_rich Low_complexity Low_complexity 1 35 0 859 109 8 0 chr6 178007102 178007221 -4408021 - AluSg/x SINE Alu -28 282 163 438 198 0 44 chr6 178007353 178007444 -4407798 + MER81 DNA DNA 1 87 -27 481 173 282 0 chr6 178007685 178007795 -4407447 + AluJo SINE Alu 1 141 -171 1206 89 0 0 chr6 178008668 178008951 -4406291 + (TAGTG)n Simple_repeat Simple_repeat 1 283 0 1284 81 0 2 chr6 178008976 178009335 -4405907 + (TAGTG)n Simple_repeat Simple_repeat 1 538 0 1089 106 0 0 chr6 178009356 178009536 -4405706 + (TAGTG)n Simple_repeat Simple_repeat 1 180 0 2278 120 0 0 chr6 178010500 178010808 -4404434 + AluSc SINE Alu 1 308 -1 2201 119 0 7 chr6 178011234 178011544 -4403698 + AluSg SINE Alu 1 308 -2 1766 170 44 6 chr6 178011627 178011993 -4403249 + MLT2C2 LTR ERVL 1 409 -55 294 148 0 0 chr6 178012013 178012067 -4403175 + (TG)n Simple_repeat Simple_repeat 1 54 0 1996 167 21 3 chr6 178012067 178012403 -4402839 - MER7A DNA MER2_type -6 340 1 2286 124 77 21 chr6 178012567 178012903 -4402339 + MSTA LTR MaLR 30 391 -37 1762 124 88 0 chr6 178012903 178013176 -4402066 - AluSq SINE Alu -16 297 1 2286 124 77 21 chr6 178013176 178013217 -4402025 + MSTA LTR MaLR 391 428 0 849 303 167 15 chr6 178014407 178015276 -4399966 - L2 LINE L2 -1 3312 2252 2506 111 34 3 chr6 178015276 178015628 -4399614 + THE1B LTR MaLR 2 364 0 849 303 167 15 chr6 178015628 178015834 -4399408 - L2 LINE L2 -1061 2252 2079 431 297 12 12 chr6 178017927 178018092 -4397150 + MIR SINE MIR 83 247 -15 1419 177 63 37 chr6 178018100 178018400 -4396842 - AluJo SINE Alu -4 308 1 1948 151 0 26 chr6 178019278 178019590 -4395652 - AluJb SINE Alu -8 304 1 1875 153 3 13 chr6 178019822 178020123 -4395119 + AluSx SINE Alu 1 298 -14 2317 102 7 7 chr6 178021675 178021979 -4393263 + AluSx SINE Alu 1 304 -8 249 108 0 0 chr6 178022836 178022873 -4392369 + (A)n Simple_repeat Simple_repeat 1 37 0 1537 113 4 42 chr6 178023375 178023614 -4391628 - AluSg/x SINE Alu -4 306 77 23 0 0 0 chr6 178023615 178023638 -4391604 + AT_rich Low_complexity Low_complexity 1 23 0 457 264 57 7 chr6 178023786 178023926 -4391316 - MER5A DNA MER1_type -1 188 42 213 65 0 0 chr6 178025223 178025254 -4389988 + (TG)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr6 178025573 178025594 -4389648 + AT_rich Low_complexity Low_complexity 1 21 0 208 225 56 28 chr6 178026608 178026679 -4388563 + MIR SINE MIR 93 150 -58 370 291 63 40 chr6 178026761 178026984 -4388258 - MIR SINE MIR -20 242 15 398 155 0 24 chr6 178028770 178028854 -4386388 + GA-rich Low_complexity Low_complexity 1 82 0 258 281 70 35 chr6 178028907 178029021 -4386221 - MIR SINE MIR -112 150 33 2079 148 0 3 chr6 178029212 178029515 -4385727 + AluSx SINE Alu 1 302 -10 1839 162 0 7 chr6 178029542 178029844 -4385398 + AluJo SINE Alu 1 300 -12 22 0 0 0 chr6 178030000 178030022 -4385220 + AT_rich Low_complexity Low_complexity 1 22 0 371 183 12 0 chr6 178032587 178032669 -4382573 - Charlie2a DNA MER1_type -61 2801 2719 565 262 58 0 chr6 178032683 178032855 -4382387 - Charlie2a DNA MER1_type -1200 1662 1481 503 257 6 0 chr6 178032907 178033078 -4382164 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 281 264 104 19 chr6 178033093 178033199 -4382043 - Charlie2b DNA MER1_type -2112 670 556 * 518 254 8 23 chr6 178033196 178033326 -4381916 - Charlie2b DNA MER1_type -2469 313 186 2057 162 42 27 chr6 178033331 178033739 -4381503 + L1MA7 LINE L1 5873 6286 -5 2394 56 0 20 chr6 178033813 178034117 -4381125 - AluY SINE Alu -13 298 1 264 324 37 0 chr6 178034489 178034597 -4380645 - MER58B DNA MER1_type 0 341 230 290 235 98 45 chr6 178035027 178035159 -4380083 + LTR16C LTR ERVL 345 483 -8 2364 107 0 0 chr6 178035328 178035626 -4379616 + AluSx SINE Alu 1 298 -14 183 256 0 0 chr6 178036210 178036249 -4378993 - MIR SINE MIR -119 143 105 240 241 0 0 chr6 178037600 178037658 -4377584 - MIR SINE MIR -38 224 167 2585 59 3 0 chr6 178037763 178038068 -4377174 - AluY SINE Alu -5 306 1 1370 254 101 82 chr6 178039993 178040528 -4374714 - L1MC4a LINE L1 -1624 6184 5623 2100 98 0 0 chr6 178040528 178040792 -4374450 - AluSc SINE Alu -45 264 1 1370 254 101 82 chr6 178040792 178041170 -4374072 - L1MC4a LINE L1 -2185 5623 5254 225 186 0 0 chr6 178041509 178041552 -4373690 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 300 258 11 11 chr6 178041733 178041822 -4373420 - L1MC4a LINE L1 -1326 4820 4732 634 164 0 0 chr6 178042001 178042111 -4373131 - AluJ SINE Alu 0 312 203 875 145 0 0 chr6 178042112 178042243 -4372999 - AluJ SINE Alu -171 131 1 233 308 168 29 chr6 178042968 178043176 -4372066 - L2 LINE L2 0 3272 3036 773 299 93 39 chr6 178044946 178045557 -4369685 + L2 LINE L2 2163 2806 -508 225 316 202 0 chr6 178045814 178045928 -4369314 + L2 LINE L2 3154 3290 -23 207 0 0 0 chr6 178045993 178046016 -4369226 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 351 0 0 0 chr6 178046015 178046054 -4369188 + (CA)n Simple_repeat Simple_repeat 1 39 0 184 326 77 68 chr6 178046518 178046739 -4368503 + L2 LINE L2 3040 3262 -10 318 270 60 81 chr6 178046817 178047002 -4368240 - L2 LINE L2 -13 3300 3120 30 97 0 0 chr6 178051841 178051934 -4363308 + GC_rich Low_complexity Low_complexity 1 93 0 21 0 0 0 chr6 178052113 178052134 -4363108 + GC_rich Low_complexity Low_complexity 1 21 0 21 26 0 26 chr6 178055936 178055956 -4359286 + AT_rich Low_complexity Low_complexity 1 21 -17 864 146 28 0 chr6 178055956 178056100 -4359142 - L1PB1 LINE L1 -1 6150 6003 21 26 0 26 chr6 178056100 178056118 -4359124 + AT_rich Low_complexity Low_complexity 21 38 0 33 80 0 0 chr6 178056229 178056304 -4358938 + AT_rich Low_complexity Low_complexity 1 75 0 503 189 21 14 chr6 178057429 178057572 -4357670 + GA-rich Low_complexity Low_complexity 3 146 0 1589 169 0 15 chr6 178108444 178108705 -4306537 + AluJb SINE Alu 40 296 -16 721 67 0 0 chr6 178109363 178109452 -4305790 - AluY SINE Alu -221 90 2 21 0 0 0 chr6 178109819 178109840 -4305402 + AT_rich Low_complexity Low_complexity 1 21 0 256 374 0 0 chr6 178109975 178110090 -4305152 - MIR3 SINE MIR -49 159 45 288 256 0 13 chr6 178113517 178113595 -4301647 - MER116 DNA Mariner -1 79 3 3624 24 0 2 chr6 178114460 178114880 -4300362 + L1PA2 LINE L1 5736 6154 -1 2462 51 0 44 chr6 178115328 178115643 -4299599 - AluY SINE Alu 0 311 11 237 276 19 9 chr6 178116049 178116154 -4299088 + (TATATG)n Simple_repeat Simple_repeat 6 111 0 2088 125 7 3 chr6 178116479 178116774 -4298468 + AluSx SINE Alu 1 296 -16 2307 72 7 13 chr6 178116775 178117080 -4298162 + AluSg SINE Alu 3 305 -5 188 246 180 12 chr6 178117388 178117555 -4297687 - L2 LINE L2 -276 3037 2843 306 331 100 6 chr6 178117618 178117778 -4297464 + MIR SINE MIR 81 255 -7 254 291 94 49 chr6 178120033 178120256 -4294986 + L1MEd LINE L1 312 544 -5575 442 272 80 53 chr6 178120409 178120883 -4294359 + L1MEd LINE L1 753 1239 -4880 244 133 67 17 chr6 178120919 178120979 -4294263 - MLT2B1 LTR ERVL 0 520 458 754 137 14 0 chr6 178120979 178121125 -4294117 + (TAGG)n Simple_repeat Simple_repeat 1 148 0 26 0 0 0 chr6 178123633 178123659 -4291583 + AT_rich Low_complexity Low_complexity 1 26 0 306 145 63 13 chr6 178123660 178123819 -4291423 + (TA)n Simple_repeat Simple_repeat 2 168 0 255 114 0 0 chr6 178124020 178124064 -4291178 + (T)n Simple_repeat Simple_repeat 1 44 0 219 228 18 18 chr6 178125845 178125902 -4289340 + CT-rich Low_complexity Low_complexity 2 58 0 2394 76 13 7 chr6 178127266 178127568 -4287674 - AluY SINE Alu -7 304 1 414 281 180 30 chr6 178127579 178127913 -4287329 - L1MB8 LINE L1 -297 5881 5498 631 278 44 50 chr6 178127917 178128332 -4286910 - L1MB8 LINE L1 -714 5450 5030 2384 146 28 31 chr6 178130270 178130728 -4284514 + MSTB2 LTR MaLR 1 457 0 1859 198 35 43 chr6 178130867 178131376 -4283866 + MLT1D LTR MaLR 1 505 0 251 298 33 8 chr6 178133129 178133250 -4281992 - MIR3 SINE MIR -40 168 45 2230 108 0 16 chr6 178133314 178133629 -4281613 + AluSg SINE Alu 1 310 0 362 345 20 18 chr6 178134444 178134673 -4280569 + MIR SINE MIR 34 262 0 213 286 250 7 chr6 178135129 178135269 -4279973 + MER5B DNA MER1_type 1 174 -4 211 208 21 0 chr6 178137059 178137107 -4278135 - L2 LINE L2 0 3313 3265 2209 95 41 0 chr6 178137329 178137623 -4277619 - AluY SINE Alu -5 306 1 219 324 48 9 chr6 178140064 178140169 -4275073 + MIR SINE MIR 46 154 -108 246 330 11 0 chr6 178140186 178140277 -4274965 + (TATG)n Simple_repeat Simple_repeat 4 95 0 2311 79 7 0 chr6 178140761 178141064 -4274178 + L1PB1 LINE L1 5846 6150 -1 221 283 0 63 chr6 178141744 178141935 -4273307 + C-rich Low_complexity Low_complexity 1 179 0 262 371 0 0 chr6 178142153 178142320 -4272922 + GA-rich Low_complexity Low_complexity 2 168 0 * 266 367 0 6 chr6 178142261 178142441 -4272801 + (CGGA)n Simple_repeat Simple_repeat 2 180 0 2220 85 9 58 chr6 178143550 178143878 -4271364 - AluSx SINE Alu 0 312 1 186 129 32 0 chr6 178144537 178144568 -4270674 - L2 LINE L2 -19 3253 3222 243 297 25 42 chr6 178144621 178144739 -4270503 - MIR SINE MIR -138 124 9 4653 139 80 104 chr6 178144833 178145594 -4269648 + Tigger3b DNA MER2_type 3 729 -2299 2313 66 14 0 chr6 178145594 178145882 -4269360 + AluY SINE Alu 1 292 -19 4653 139 80 104 chr6 178145882 178146278 -4268964 + Tigger3b DNA MER2_type 729 1133 -98 721 241 0 0 chr6 178146482 178146627 -4268615 + Tigger3b DNA MER2_type 1087 1231 0 1760 124 6 89 chr6 178146885 178147199 -4268043 + AluSx SINE Alu 2 289 -23 233 250 60 35 chr6 178148416 178148532 -4266710 - L1ME4a LINE L1 -18 6103 5985 239 219 16 16 chr6 178148898 178148962 -4266280 - L2 LINE L2 0 3313 3250 380 186 0 12 chr6 178152071 178152157 -4263085 - MIR SINE MIR -5 257 173 2469 88 0 0 chr6 178152478 178152784 -4262458 + AluY SINE Alu 1 306 -5 489 202 46 0 chr6 178154531 178154640 -4260602 - MER46C DNA MER2_type 0 338 225 438 218 0 0 chr6 178155526 178155636 -4259606 + (ATGGTG)n Simple_repeat Simple_repeat 4 113 0 374 202 0 19 chr6 178155692 178155796 -4259446 + (ATGGTG)n Simple_repeat Simple_repeat 5 106 0 312 233 126 37 chr6 178155925 178156061 -4259181 - MIR SINE MIR -62 146 34 252 0 0 0 chr6 178156117 178156145 -4259097 + (CA)n Simple_repeat Simple_repeat 1 28 0 497 251 152 62 chr6 178157382 178157593 -4257649 + MIR SINE MIR 23 252 -10 30 59 0 0 chr6 178157717 178157768 -4257474 + AT_rich Low_complexity Low_complexity 1 51 0 253 309 48 0 chr6 178158514 178158598 -4256644 + L2 LINE L2 3193 3280 -33 241 258 0 30 chr6 178158934 178159000 -4256242 - L1MC5 LINE L1 -53 7908 7845 583 270 40 45 chr6 178160109 178160309 -4254933 - MER46C DNA MER2_type -2 336 138 868 158 99 10 chr6 178161526 178161728 -4253514 + L1MD3 LINE L1 7776 7995 0 260 309 0 0 chr6 178161783 178161851 -4253391 + L2 LINE L2 3246 3313 0 218 326 109 29 chr6 178162528 178162666 -4252576 + MIR SINE MIR 111 259 -3 293 290 75 0 chr6 178162778 178162885 -4252357 + MIR SINE MIR 99 213 -49 393 285 85 20 chr6 178163364 178163564 -4251678 - L1ME LINE L1 -532 5638 5426 1447 100 20 44 chr6 178163680 178163931 -4251311 - L1MA9 LINE L1 -15 6297 6053 189 196 0 0 chr6 178163953 178164004 -4251238 + (TTA)n Simple_repeat Simple_repeat 2 52 0 11744 174 38 33 chr6 178164036 178164322 -4250920 - L1MA5A LINE L1 -249 7008 6725 1977 127 0 11 chr6 178164322 178164606 -4250636 + AluY SINE Alu 1 281 -30 11744 174 38 33 chr6 178164606 178166106 -4249136 - L1MA5A LINE L1 -532 6725 5270 7344 22 0 0 chr6 178166106 178166960 -4248282 + L1PA3 LINE L1 5321 6176 0 11744 174 38 33 chr6 178166960 178168408 -4246834 - L1MA5A LINE L1 -1987 5270 3831 1246 220 107 0 chr6 178168403 178168730 -4246512 - L1MA5A LINE L1 -6668 362 1 * 1215 193 61 87 chr6 178169092 178169470 -4245772 + MLT2D LTR ERVL 1 368 -46 966 149 2 2 chr6 178169470 178169699 -4245543 + (CCTA)n Simple_repeat Simple_repeat 1 409 0 345 359 4 0 chr6 178169825 178170064 -4245178 + C-rich Low_complexity Low_complexity 1 240 0 299 216 40 0 chr6 178172525 178172599 -4242643 - MIR SINE MIR -89 119 43 1171 222 79 12 chr6 178173193 178173535 -4241707 - MLT1A1 LTR MaLR 0 365 1 363 271 39 16 chr6 178177988 178178117 -4237125 - L2 LINE L2 -3 3269 3138 390 197 14 0 chr6 178178471 178178542 -4236700 + MLT1D LTR MaLR 4 75 -430 358 196 167 0 chr6 178178727 178178829 -4236413 + MLT1D LTR MaLR 387 505 0 21 36 0 0 chr6 178178924 178178952 -4236290 + AT_rich Low_complexity Low_complexity 1 28 0 240 272 99 0 chr6 178179287 178179368 -4235874 - Charlie8 DNA MER1_type -1960 457 369 868 249 50 12 chr6 178179572 178179813 -4235429 - Charlie1 DNA MER1_type -927 1834 1585 842 289 47 18 chr6 178179813 178180197 -4235045 - Charlie1a DNA MER1_type -1055 400 6 34 93 0 0 chr6 178180568 178180665 -4234577 + AT_rich Low_complexity Low_complexity 1 97 0 273 254 32 0 chr6 178181232 178181295 -4233947 - L2 LINE L2 -3 3269 3205 869 146 0 0 chr6 178181612 178181735 -4233507 + AluJb SINE Alu 1 123 -189 498 17 0 0 chr6 178184792 178184851 -4230391 + (TGAA)n Simple_repeat Simple_repeat 2 60 0 254 279 51 0 chr6 178185977 178186056 -4229186 + MER5A DNA MER1_type 86 168 -21 270 0 0 0 chr6 178187494 178187524 -4227718 + (TG)n Simple_repeat Simple_repeat 2 31 0 1152 237 65 4 chr6 178188757 178189076 -4226166 + MER82 DNA MER2_type 1 361 -292 294 154 309 60 chr6 178189085 178189234 -4226008 - L1MB3 LINE L1 -7 6176 5991 2117 107 7 3 chr6 178189403 178189712 -4225530 + L1PB1 LINE L1 5766 6075 -76 1031 238 48 31 chr6 178189714 178189760 -4225482 + MER82 DNA MER2_type 351 395 -258 2389 90 7 0 chr6 178189760 178190070 -4225172 + AluSp SINE Alu 1 312 -1 1031 238 48 31 chr6 178190070 178190313 -4224929 + MER82 DNA MER2_type 395 645 -8 360 281 162 9 chr6 178190821 178191031 -4224211 - L2 LINE L2 0 3313 3072 2213 108 3 3 chr6 178192265 178192561 -4222681 - AluSx SINE Alu -16 296 1 26 0 0 0 chr6 178193196 178193222 -4222020 + AT_rich Low_complexity Low_complexity 1 26 0 275 203 216 33 chr6 178194244 178194397 -4220845 + L1ME LINE L1 5678 5858 -263 4384 192 34 8 chr6 178194573 178195523 -4219719 + L1M2 LINE L1 2032 3005 -4561 721 175 32 3 chr6 178195549 178195749 -4219493 + L1M2 LINE L1 3466 3674 -3891 1623 121 0 0 chr6 178195974 178196214 -4219028 - AluYa5 SINE Alu 0 311 72 772 127 9 43 chr6 178196319 178196548 -4218694 + (CACCAT)n Simple_repeat Simple_repeat 1 221 0 899 165 0 16 chr6 178196575 178196757 -4218485 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 464 176 10 0 chr6 178196734 178196836 -4218406 + (CAT)n Simple_repeat Simple_repeat 1 103 0 * 1087 183 111 108 chr6 178198927 178199169 -4216073 + MER66A LTR ERV1 97 267 -211 2131 94 44 14 chr6 178199169 178199466 -4215776 + AluY SINE Alu 1 306 -5 1087 183 111 108 chr6 178199466 178199679 -4215563 + MER66A LTR ERV1 267 478 0 248 298 32 21 chr6 178199721 178199815 -4215427 + MLT1E3 LTR MaLR 509 603 -21 22 0 0 0 chr6 178200837 178200859 -4214383 + AT_rich Low_complexity Low_complexity 1 22 0 198 209 0 0 chr6 178201879 178201922 -4213320 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 509 281 92 11 chr6 178201953 178202138 -4213104 + MIR SINE MIR 15 214 -48 283 253 273 42 chr6 178203601 178204001 -4211241 - L1MC4a LINE L1 -1637 6171 5680 500 253 174 21 chr6 178204063 178204253 -4210989 - L1MC4a LINE L1 -2267 5541 5323 2174 97 14 0 chr6 178204285 178204574 -4210668 - AluSg SINE Alu -17 293 1 255 318 40 0 chr6 178204952 178205100 -4210142 - L1MC4a LINE L1 -1299 4847 4694 2018 143 13 0 chr6 178205497 178205797 -4209445 + AluSg SINE Alu 1 304 -6 967 133 0 11 chr6 178205823 178206004 -4209238 + (GAA)n Simple_repeat Simple_repeat 2 180 0 333 100 0 0 chr6 178206007 178206057 -4209185 + (GGA)n Simple_repeat Simple_repeat 3 52 0 414 254 44 0 chr6 178208032 178208146 -4207096 - MIR SINE MIR -90 172 54 1444 189 99 13 chr6 178208269 178208582 -4206660 + MER61A LTR ERV1 4 343 0 25 110 0 0 chr6 178209018 178209127 -4206115 + AT_rich Low_complexity Low_complexity 1 109 0 2920 154 25 4 chr6 178209228 178209715 -4205527 + LOR1a LTR ERV1 1 497 0 2248 114 0 0 chr6 178210636 178210935 -4204307 - AluSx SINE Alu -13 299 1 413 234 28 0 chr6 178211163 178211270 -4203972 - MIR SINE MIR -16 246 137 330 287 57 0 chr6 178211480 178211602 -4203640 + MIR SINE MIR 40 168 -94 4632 115 132 139 chr6 178211748 178213162 -4202080 - pTR5 LTR ERV1 0 2438 743 4542 176 29 16 chr6 178214576 178215779 -4199463 - L1MB7 LINE L1 0 6184 4962 902 228 40 5 chr6 178216427 178216629 -4198613 + MER3 DNA MER1_type 1 209 0 21 36 0 0 chr6 178217171 178217199 -4198043 + AT_rich Low_complexity Low_complexity 1 28 0 236 51 0 51 chr6 178217626 178217665 -4197577 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr6 178218967 178218988 -4196254 + (A)n Simple_repeat Simple_repeat 1 21 0 2411 89 3 3 chr6 178219710 178220023 -4195219 + AluSp SINE Alu 1 313 0 27 29 0 0 chr6 178220675 178220709 -4194533 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr6 178220969 178220997 -4194245 + AT_rich Low_complexity Low_complexity 1 28 0 804 196 43 27 chr6 178222314 178222498 -4192744 - L1MB1 LINE L1 0 6168 5982 1171 158 15 20 chr6 178222499 178222695 -4192547 - AluJo SINE Alu -89 223 29 945 199 138 13 chr6 178222722 178222953 -4192289 - L1MB1 LINE L1 -349 5963 5704 232 319 200 5 chr6 178223896 178224266 -4190976 + L2 LINE L2 1911 2352 -962 381 339 54 23 chr6 178225321 178225542 -4189700 - MIR SINE MIR -1 261 34 357 205 0 18 chr6 178225588 178225754 -4189488 + (CA)n Simple_repeat Simple_repeat 1 163 0 312 231 0 16 chr6 178225769 178226096 -4189146 + (CA)n Simple_repeat Simple_repeat 1 321 0 2089 104 17 7 chr6 178226918 178227048 -4188194 + AluSq SINE Alu 1 128 -185 255 31 0 0 chr6 178227048 178227080 -4188162 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2089 104 17 7 chr6 178227080 178227238 -4188004 + AluSq SINE Alu 128 292 -21 2406 73 30 0 chr6 178227558 178227860 -4187382 - AluY SINE Alu 0 311 1 360 253 18 73 chr6 178228202 178228457 -4186785 - L1MC4 LINE L1 -370 7672 7331 372 266 73 0 chr6 178228457 178228581 -4186661 + MER94 DNA DNA 1 133 -1 364 254 22 15 chr6 178228780 178228914 -4186328 - L1MC4 LINE L1 -811 7231 7097 180 0 0 0 chr6 178230184 178230204 -4185038 + (CA)n Simple_repeat Simple_repeat 1 20 0 2066 113 22 0 chr6 178230207 178230482 -4184760 - AluSx SINE Alu -31 281 1 2013 157 0 0 chr6 178232737 178233031 -4182211 + AluSx SINE Alu 1 294 -18 377 219 0 0 chr6 178234016 178234098 -4181144 - MER69 DNA AcHobo -2 2524 2443 319 330 53 24 chr6 178234718 178234927 -4180315 + L2 LINE L2 2143 2357 -957 184 379 68 15 chr6 178234983 178235115 -4180127 + L2 LINE L2 3133 3271 -1 207 0 0 0 chr6 178235878 178235901 -4179341 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 232 229 0 52 chr6 178236215 178236311 -4178931 + G-rich Low_complexity Low_complexity 3 93 0 252 0 0 0 chr6 178237517 178237545 -4177697 + (A)n Simple_repeat Simple_repeat 1 28 0 338 302 77 18 chr6 178239876 178240045 -4175197 + MIR3 SINE MIR 17 195 -13 2307 102 3 0 chr6 178242418 178242721 -4172521 + AluSg SINE Alu 1 304 -6 2247 108 7 3 chr6 178243319 178243625 -4171617 - AluSg SINE Alu -3 307 1 232 227 111 24 chr6 178244232 178244386 -4170856 - MIR SINE MIR -56 206 41 2964 3 0 0 chr6 178244808 178245119 -4170123 - AluYa5 SINE Alu 0 311 1 14960 182 34 16 chr6 178245326 178249954 -4165288 + L1MA4 LINE L1 2232 6942 0 269 171 125 80 chr6 178249923 178250011 -4165231 + L1ME LINE L1 6432 6523 -283 * 195 306 102 0 chr6 178252073 178252171 -4163071 + MIR SINE MIR 43 150 -112 183 139 0 0 chr6 178254429 178254465 -4160777 + (T)n Simple_repeat Simple_repeat 1 36 0 507 138 24 65 chr6 178256246 178256369 -4158873 - L1MA8 LINE L1 -10 6281 6164 575 264 44 22 chr6 178256471 178256698 -4158544 - MIR SINE MIR 0 262 31 2117 190 85 8 chr6 178257313 178257782 -4157460 + MLT1D LTR MaLR 1 505 0 432 255 31 25 chr6 178258107 178258268 -4156974 - MLT1C LTR MaLR -220 247 86 1170 163 14 37 chr6 178258268 178258483 -4156759 + MER2 DNA MER2_type 1 210 -135 230 205 154 26 chr6 178258585 178258663 -4156579 - MLT1C LTR MaLR -374 93 6 369 177 0 0 chr6 178259037 178259099 -4156143 + LTR41 LTR ERVL 712 773 0 2071 95 19 44 chr6 178260098 178260415 -4154827 - AluSc SINE Alu 0 309 1 215 333 152 14 chr6 178260956 178261094 -4154148 + L2 LINE L2 3116 3272 0 2159 133 7 0 chr6 178261669 178261970 -4153272 + AluSx SINE Alu 2 304 -8 1877 166 10 0 chr6 178261976 178262284 -4152958 + AluSx SINE Alu 2 312 0 231 297 14 0 chr6 178263148 178263222 -4152020 - MIR SINE MIR -139 123 49 1753 124 93 37 chr6 178263895 178264250 -4150992 - THE1C LTR MaLR 0 375 1 878 294 131 37 chr6 178265197 178265875 -4149367 + L1MEd LINE L1 274 1015 -5104 910 321 60 5 chr6 178265893 178266276 -4148966 + L2 LINE L2 1 404 -2910 1146 302 72 30 chr6 178266312 178266996 -4148246 + L2 LINE L2 2427 3081 -232 204 40 0 0 chr6 178266996 178267021 -4148221 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 2050 112 4 4 chr6 178267023 178267299 -4147943 - AluSc SINE Alu -33 276 1 1146 302 72 30 chr6 178267299 178267414 -4147828 + L2 LINE L2 3081 3275 -38 377 271 33 8 chr6 178267415 178267537 -4147705 + L1MEd LINE L1 1024 1148 -4971 1268 188 18 29 chr6 178267645 178267922 -4147320 - MER106B DNA MER1_type -765 294 21 466 62 71 0 chr6 178268569 178268682 -4146560 + CT-rich Low_complexity Low_complexity 2 122 0 273 114 79 0 chr6 178268784 178268898 -4146344 + (CTCA)n Simple_repeat Simple_repeat 2 124 0 669 275 126 0 chr6 178271868 178272090 -4143152 - L1MC4a LINE L1 -5 7803 7554 323 217 30 157 chr6 178272117 178272352 -4142890 - MIR SINE MIR -18 244 40 217 281 31 16 chr6 178272468 178272532 -4142710 + L2 LINE L2 3201 3265 -7 1006 310 38 26 chr6 178272972 178273501 -4141741 + L3 LINE CR1 587 1121 -456 364 306 119 6 chr6 178273640 178273800 -4141442 - MER5B DNA MER1_type 0 178 1 1301 224 67 59 chr6 178273889 178274349 -4140893 + MLT1C LTR MaLR 1 464 -3 2102 115 0 48 chr6 178275129 178275296 -4139946 - AluSx SINE Alu -13 299 152 2625 56 0 0 chr6 178275296 178275599 -4139643 - AluY SINE Alu -8 303 1 2102 115 0 48 chr6 178275599 178275745 -4139497 - AluSx SINE Alu -160 152 1 253 286 44 70 chr6 178276017 178276290 -4138952 - L2 LINE L2 -1039 2275 2010 275 269 163 41 chr6 178277577 178277930 -4137312 + L2 LINE L2 2855 3269 -3 286 332 36 51 chr6 178278175 178278449 -4136793 - L2 LINE L2 -1 3271 3002 2158 131 0 6 chr6 178278965 178279279 -4135963 + AluSx SINE Alu 1 312 0 299 119 0 17 chr6 178279305 178279364 -4135878 + (TC)n Simple_repeat Simple_repeat 1 58 0 2319 100 10 0 chr6 178280296 178280595 -4134647 + AluSp SINE Alu 1 302 -11 485 291 147 26 chr6 178281448 178281788 -4133454 + MLT1J2 LTR MaLR 69 449 -1 215 350 40 0 chr6 178281792 178281892 -4133350 + L2 LINE L2 2432 2535 -779 1526 320 127 12 chr6 178282117 178283215 -4132027 - L2 LINE L2 -726 2588 1365 22 35 0 0 chr6 178284050 178284079 -4131163 + AT_rich Low_complexity Low_complexity 1 29 0 630 109 25 8 chr6 178284727 178284846 -4130396 + CT-rich Low_complexity Low_complexity 4 124 0 521 138 40 6 chr6 178284981 178285314 -4129928 + (TA)n Simple_repeat Simple_repeat 1 344 0 27 29 0 0 chr6 178285314 178285348 -4129894 + AT_rich Low_complexity Low_complexity 1 34 0 309 213 113 40 chr6 178285348 178285498 -4129744 - L1MCa LINE L1 -4359 2067 1907 482 138 50 8 chr6 178285518 178285784 -4129458 + (TA)n Simple_repeat Simple_repeat 1 277 0 380 328 85 0 chr6 178285784 178285973 -4129269 + L1ME1 LINE L1 5819 6023 -143 266 240 24 32 chr6 178285979 178286078 -4129164 + L1ME1 LINE L1 6082 6177 -1 * 463 261 0 8 chr6 178286072 178286191 -4129051 + L1ME1 LINE L1 3494 3611 -2535 673 202 166 45 chr6 178286193 178286416 -4128826 + L1ME1 LINE L1 5602 5851 -311 730 185 47 181 chr6 178286418 178286650 -4128592 - MLT1A2 LTR MaLR -2 372 173 238 214 18 0 chr6 178286650 178286706 -4128536 + GA-rich Low_complexity Low_complexity 4 60 0 636 168 0 42 chr6 178286731 178286779 -4128463 - MLT1A2 LTR MaLR -251 114 66 2868 157 232 90 chr6 178286779 178287672 -4127570 - LTR28 LTR ERV1 0 1020 1 636 168 0 42 chr6 178287672 178287742 -4127500 - MLT1A2 LTR MaLR -299 66 1 606 298 104 7 chr6 178287742 178288021 -4127221 + L1ME1 LINE L1 5844 6149 -17 189 0 0 0 chr6 178288939 178288960 -4126282 + (T)n Simple_repeat Simple_repeat 1 21 0 242 111 93 37 chr6 178289463 178289517 -4125725 - LTR16A1 LTR ERVL -333 124 68 267 31 0 0 chr6 178290457 178290489 -4124753 + (TG)n Simple_repeat Simple_repeat 1 32 0 683 207 162 80 chr6 178291798 178292223 -4123019 + LTR40b LTR ERVL 1 460 -2 279 222 20 20 chr6 178292616 178292715 -4122527 + L1MEc LINE L1 1847 1945 -4451 24 91 0 0 chr6 178292823 178292889 -4122353 + AT_rich Low_complexity Low_complexity 1 66 0 233 155 48 30 chr6 178292897 178293065 -4122177 + (TA)n Simple_repeat Simple_repeat 2 172 0 42 36 0 0 chr6 178293105 178293161 -4122081 + AT_rich Low_complexity Low_complexity 1 56 0 266 187 45 0 chr6 178293188 178293343 -4121899 + (TA)n Simple_repeat Simple_repeat 1 162 0 32 0 0 0 chr6 178293350 178293382 -4121860 + AT_rich Low_complexity Low_complexity 1 32 0 194 167 48 0 chr6 178293382 178293466 -4121776 + (TA)n Simple_repeat Simple_repeat 2 89 0 511 237 61 15 chr6 178293477 178293608 -4121634 - MER58A DNA MER1_type 0 138 2 2279 252 29 41 chr6 178293674 178294511 -4120731 + L1MEc LINE L1 2321 3147 -3068 280 263 70 58 chr6 178294620 178294776 -4120466 + L1M4b LINE L1 89 246 -6613 404 213 7 182 chr6 178295356 178295647 -4119595 + L1M4b LINE L1 1206 1445 -5414 322 130 0 0 chr6 178295644 178295698 -4119544 - L1M1 LINE L1 -5234 2331 2278 * 417 233 0 116 chr6 178295810 178295846 -4119396 - L1M4 LINE L1 -1078 5068 5029 923 257 86 36 chr6 178295846 178296344 -4118898 - LTR33A LTR ERVL 0 523 1 417 233 0 116 chr6 178296344 178296479 -4118763 - L1M4 LINE L1 -1117 5029 4917 2466 110 16 16 chr6 178296506 178296879 -4118363 + THE1C LTR MaLR 1 373 -2 21 0 0 0 chr6 178296904 178296925 -4118317 + AT_rich Low_complexity Low_complexity 1 21 0 1790 175 10 10 chr6 178297223 178297531 -4117711 + AluJb SINE Alu 1 308 -4 1550 198 23 20 chr6 178298372 178298715 -4116527 - MLT1C LTR MaLR -122 345 2 6325 97 0 5 chr6 178298778 178299658 -4115584 - L1PB1 LINE L1 -1 6150 5275 10973 202 14 11 chr6 178299661 178302037 -4113205 - L1PB1 LINE L1 -1544 4602 2219 24 53 0 0 chr6 178302116 178302154 -4113088 + AT_rich Low_complexity Low_complexity 1 38 0 4537 152 18 18 chr6 178302454 178303192 -4112050 + LTR39 LTR ERV1 46 783 0 365 217 43 103 chr6 178303193 178303377 -4111865 - L1MCc LINE L1 -5002 1421 1249 1135 248 86 37 chr6 178303701 178304129 -4111113 - L1MCc LINE L1 -5950 473 25 1197 99 7 0 chr6 178304941 178305246 -4109996 + AluSx SINE Alu 1 306 0 232 284 0 15 chr6 178305401 178305468 -4109774 + G-rich Low_complexity Low_complexity 1 66 0 277 340 0 0 chr6 178305483 178305583 -4109659 + MIR3 SINE MIR 91 190 -18 288 205 26 51 chr6 178306472 178306550 -4108692 + L2 LINE L2 3232 3307 -6 243 270 71 48 chr6 178306836 178306962 -4108280 - LTR67 LTR ERVL 0 557 429 479 176 0 0 chr6 178307337 178307428 -4107814 - MIR SINE MIR -100 162 72 199 336 34 62 chr6 178307502 178307648 -4107594 - L2 LINE L2 -6 3266 3125 26 0 0 0 chr6 178308048 178308074 -4107168 + AT_rich Low_complexity Low_complexity 1 26 0 417 250 9 0 chr6 178308604 178308716 -4106526 - MLT1I LTR MaLR 0 409 297 315 244 35 43 chr6 178308841 178308956 -4106286 - MLT1I LTR MaLR -287 122 9 262 228 174 22 chr6 178309074 178309166 -4106076 - LTR33A LTR ERVL 0 523 418 616 272 38 16 chr6 178309379 178309563 -4105679 + L1MC4 LINE L1 7713 7900 -142 494 270 62 93 chr6 178309647 178310066 -4105176 - ERVL LTR ERVL -631 5133 4728 996 252 44 34 chr6 178310116 178310493 -4104749 - L1ME1 LINE L1 0 6253 5833 * 4322 263 48 24 chr6 178310488 178312109 -4103133 - L1ME1 LINE L1 -1397 4818 3160 569 39 0 13 chr6 178312109 178312186 -4103056 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 1746 153 8 0 chr6 178312186 178312448 -4102794 - AluSx SINE Alu -48 264 1 533 244 48 18 chr6 178312468 178312636 -4102606 - L1ME1 LINE L1 -3355 2860 2688 1669 230 31 42 chr6 178312636 178313083 -4102159 + MLT1D LTR MaLR 2 443 -62 603 252 43 50 chr6 178313086 178313368 -4101874 - L1MD2 LINE L1 -12 6347 6068 1053 184 0 73 chr6 178313371 178313616 -4101626 + AluJo SINE Alu 81 307 -5 344 162 26 86 chr6 178313640 178313757 -4101485 - L1MD2 LINE L1 -298 6061 5952 956 161 19 0 chr6 178313769 178313930 -4101312 - L1MC1 LINE L1 0 6333 6170 328 227 0 0 chr6 178313930 178313996 -4101246 + MLT1D LTR MaLR 440 505 0 3153 265 53 33 chr6 178313996 178316552 -4098690 - L1ME1 LINE L1 -3522 2693 37 288 316 35 9 chr6 178317384 178317498 -4097744 - LTR16A LTR ERVL -159 291 175 423 279 38 27 chr6 178317794 178317977 -4097265 + L2 LINE L2 2398 2582 -732 827 287 46 52 chr6 178317977 178318585 -4096657 + L2 LINE L2 2708 3305 -8 606 151 0 0 chr6 178319326 178319432 -4095810 + CT-rich Low_complexity Low_complexity 3 108 0 342 232 30 10 chr6 178319758 178319857 -4095385 - MER112 DNA MER1_type -1 259 159 206 286 0 26 chr6 178320110 178320187 -4095055 - MIR3 SINE MIR -52 156 82 536 219 66 15 chr6 178323318 178323455 -4091787 + L2 LINE L2 3168 3311 -2 196 289 0 19 chr6 178324082 178324134 -4091108 + MIR SINE MIR 20 70 -192 225 0 0 0 chr6 178324314 178324339 -4090903 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 293 55 455 0 chr6 178324413 178324468 -4090774 - MADE1 DNA Mariner 0 80 1 21 0 0 0 chr6 178325285 178325306 -4089936 + AT_rich Low_complexity Low_complexity 1 21 0 430 98 63 35 chr6 178325338 178325512 -4089730 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 243 188 0 0 chr6 178325525 178325573 -4089669 + (CATA)n Simple_repeat Simple_repeat 3 50 0 1904 274 38 37 chr6 178325581 178326233 -4089009 - MER82 DNA MER2_type 0 653 1 1687 176 132 0 chr6 178326257 178326576 -4088666 + MER46B DNA MER2_type 1 236 0 333 0 0 0 chr6 178326577 178326614 -4088628 + (CA)n Simple_repeat Simple_repeat 2 38 0 1330 198 101 16 chr6 178326615 178326923 -4088319 + MER2 DNA MER2_type 2 335 -10 24 0 0 0 chr6 178328650 178328674 -4086568 + AT_rich Low_complexity Low_complexity 1 24 0 272 289 66 8 chr6 178330247 178330368 -4084874 - MLT1L LTR MaLR -22 593 466 426 165 59 12 chr6 178331495 178331580 -4083662 - L1MC1 LINE L1 -2 6331 6243 664 220 13 108 chr6 178332785 178333017 -4082225 - MER58C DNA MER1_type -2 213 4 567 194 29 91 chr6 178333353 178333528 -4081714 + MER58A DNA MER1_type 42 205 -19 249 83 0 0 chr6 178333847 178333883 -4081359 + (CA)n Simple_repeat Simple_repeat 2 37 0 253 229 163 72 chr6 178334041 178334194 -4081048 + L2 LINE L2 3142 3308 -5 1282 288 99 33 chr6 178334633 178335498 -4079744 - L2 LINE L2 -1 3312 2392 642 208 0 0 chr6 178337216 178337336 -4077906 + AluJo SINE Alu 15 134 -178 4344 217 75 15 chr6 178338012 178339362 -4075880 + L1MD2 LINE L1 4932 6349 -10 1687 74 48 0 chr6 178340300 178340530 -4074712 + L1PA7 LINE L1 5911 6151 -3 315 0 0 0 chr6 178340952 178340987 -4074255 + (TA)n Simple_repeat Simple_repeat 2 36 0 2028 125 0 10 chr6 178340991 178341305 -4073937 - AluSx SINE Alu 0 311 1 265 193 37 28 chr6 178341338 178341447 -4073795 + (TA)n Simple_repeat Simple_repeat 1 110 0 274 267 22 0 chr6 178342288 178342378 -4072864 + MIR SINE MIR 54 145 -63 264 319 239 4 chr6 178344415 178344691 -4070551 + L2 LINE L2 2967 3307 -6 2170 136 0 0 chr6 178345648 178345942 -4069300 - AluSq SINE Alu -19 294 1 1136 81 0 0 chr6 178345942 178346078 -4069164 - AluSq/x SINE Alu -177 136 1 1991 119 3 55 chr6 178347295 178347607 -4067635 - AluSx SINE Alu -16 296 1 248 336 18 101 chr6 178348347 178348633 -4066609 - L2 LINE L2 -85 3187 2926 2019 172 25 16 chr6 178348940 178349306 -4065936 + MSTD LTR MaLR 28 396 0 305 91 36 0 chr6 178350901 178350956 -4064286 + L2 LINE L2 3256 3312 -1 195 42 0 0 chr6 178352066 178352090 -4063152 + (CA)n Simple_repeat Simple_repeat 2 25 0 659 237 45 65 chr6 178352182 178352471 -4062771 + L1MC4a LINE L1 5639 5812 -309 422 135 42 42 chr6 178352795 178352891 -4062351 - L1PB2 LINE L1 -3 6148 6053 199 358 42 17 chr6 178353032 178353152 -4062090 - MIR3 SINE MIR -72 136 14 547 248 73 23 chr6 178354354 178354572 -4060670 + MIR SINE MIR 19 247 -15 2241 162 89 2 chr6 178354767 178355161 -4060081 + MSTA LTR MaLR 1 428 0 228 178 0 0 chr6 178355575 178355620 -4059622 - LTR66 LTR ERVL -172 438 394 228 216 0 0 chr6 178355620 178355626 -4059616 + (TA)n Simple_repeat Simple_repeat 1 51 0 350 181 108 24 chr6 178356058 178356141 -4059101 + MER63 DNA MER1_type 6 721 -341 1296 56 0 24 chr6 178356452 178356700 -4058542 + (GAAA)n Simple_repeat Simple_repeat 4 243 0 2161 235 26 16 chr6 178356705 178357195 -4058047 - MLT2B2 LTR ERVL -20 495 1 2487 123 33 6 chr6 178357277 178357642 -4057600 - THE1C LTR MaLR 0 375 1 1220 228 42 52 chr6 178358317 178358765 -4056477 + MLT1F1 LTR MaLR 1 538 -29 1757 161 101 15 chr6 178358765 178359101 -4056141 + MLT1A1 LTR MaLR 1 365 0 1220 228 42 52 chr6 178359101 178359129 -4056113 + MLT1F1 LTR MaLR 538 565 -2 963 155 28 11 chr6 178359304 178359457 -4055785 - L1 LINE L1 -949 5197 5039 1234 145 28 73 chr6 178359457 178359552 -4055690 + L1MA8 LINE L1 6013 6111 -180 2272 84 7 0 chr6 178359552 178359860 -4055382 + AluY SINE Alu 1 310 -1 1234 145 28 73 chr6 178359860 178360051 -4055191 + L1MA8 LINE L1 6111 6288 -3 963 155 28 11 chr6 178360051 178360078 -4055164 - L1 LINE L1 -1107 5039 5014 392 238 110 133 chr6 178360289 178361213 -4054029 - L1MC4 LINE L1 -314 7647 6745 306 242 0 30 chr6 178361383 178361449 -4053793 - L1MC4 LINE L1 -1331 6711 6648 26 50 0 0 chr6 178363490 178363530 -4051712 + AT_rich Low_complexity Low_complexity 1 40 0 253 241 0 0 chr6 178365164 178365222 -4050020 - L2 LINE L2 0 3272 3215 547 288 93 25 chr6 178365287 178365523 -4049719 - MIR SINE MIR -3 259 8 2225 102 0 0 chr6 178366641 178366935 -4048307 + AluSx SINE Alu 1 294 -18 2934 188 59 26 chr6 178366935 178367585 -4047657 - L1MC2 LINE L1 -12 6332 5658 253 276 76 28 chr6 178368636 178368781 -4046461 + L2 LINE L2 2592 2743 -571 1620 188 10 3 chr6 178370528 178370831 -4044411 + AluJo SINE Alu 1 305 -7 207 293 27 0 chr6 178370864 178370939 -4044303 - MIR SINE MIR 0 262 186 621 67 0 0 chr6 178371702 178371777 -4043465 + AluSp/q SINE Alu 190 264 -49 1075 87 9 30 chr6 178371777 178372237 -4043005 + (GAAA)n Simple_repeat Simple_repeat 1 450 0 338 298 107 96 chr6 178373435 178374072 -4041170 + HAL1 LINE L1 838 1481 -1026 183 277 157 69 chr6 178374724 178374883 -4040359 + MIR SINE MIR 42 214 -48 390 268 121 71 chr6 178375397 178375627 -4039615 - MIR SINE MIR -11 251 14 391 285 65 8 chr6 178376913 178377036 -4038206 + MIR SINE MIR 56 185 -77 218 351 119 8 chr6 178378046 178378180 -4037062 - L2 LINE L2 -5 3267 3119 281 351 34 40 chr6 178380085 178380233 -4035009 - L2 LINE L2 -8 3264 3118 22 0 0 0 chr6 178380335 178380357 -4034885 + AT_rich Low_complexity Low_complexity 1 22 0 1941 120 7 7 chr6 178380678 178380970 -4034272 + AluSq SINE Alu 1 292 -21 325 326 88 21 chr6 178382505 178382698 -4032544 + L1 LINE L1 4099 4304 -1842 356 287 102 6 chr6 178382911 178383011 -4032231 + L1MC4 LINE L1 6516 6638 -1404 562 54 81 0 chr6 178383011 178383085 -4032157 + MADE1 DNA Mariner 1 80 0 356 287 102 6 chr6 178383085 178383141 -4032101 + L1MC4 LINE L1 6638 6687 -1355 1874 228 302 15 chr6 178383186 178383902 -4031340 + L1MC4 LINE L1 6937 7857 -185 354 272 69 58 chr6 178383983 178384156 -4031086 + L1 LINE L1 4316 4490 -1656 1967 117 28 3 chr6 178384326 178384617 -4030625 + AluSx SINE Alu 1 298 -14 27 0 0 0 chr6 178385286 178385313 -4029929 + AT_rich Low_complexity Low_complexity 1 27 0 204 192 0 39 chr6 178386393 178386471 -4028771 + C-rich Low_complexity Low_complexity 2 76 0 1998 132 20 0 chr6 178386598 178386901 -4028341 + AluSq SINE Alu 1 309 -4 780 165 8 0 chr6 178388786 178388907 -4026335 + FLAM_C SINE Alu 3 124 -19 339 286 56 36 chr6 178388943 178389139 -4026103 - L2 LINE L2 -3 3310 3111 1165 240 64 38 chr6 178391216 178391608 -4023634 + L1ME3 LINE L1 5657 6058 -104 1202 264 144 28 chr6 178391858 178392399 -4022843 + L1MC4 LINE L1 7326 7929 -113 206 200 0 0 chr6 178392399 178392434 -4022808 + polypurine Low_complexity Low_complexity 2 36 0 1159 249 77 12 chr6 178392449 178392786 -4022456 - LTR52 LTR ERVL -2 419 61 201 247 67 79 chr6 178393042 178393131 -4022111 - L2 LINE L2 0 3272 3185 540 268 112 30 chr6 178393769 178394064 -4021178 + L1MC4a LINE L1 5613 5931 -1877 207 0 0 0 chr6 178396329 178396352 -4018890 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 237 33 0 0 chr6 178396522 178396552 -4018690 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 56 0 0 chr6 178397893 178397929 -4017313 + AT_rich Low_complexity Low_complexity 1 36 0 215 337 0 21 chr6 178399733 178399828 -4015414 + G-rich Low_complexity Low_complexity 1 93 0 462 96 0 0 chr6 178399960 178400033 -4015209 + (TC)n Simple_repeat Simple_repeat 1 73 0 255 61 0 0 chr6 178401420 178401453 -4013789 + (TG)n Simple_repeat Simple_repeat 2 34 0 1884 296 69 26 chr6 178402916 178403756 -4011486 + L2 LINE L2 1549 2424 -890 602 255 123 58 chr6 178403779 178404179 -4011063 + L2 LINE L2 2821 3246 -67 207 0 0 0 chr6 178404322 178404345 -4010897 + (TG)n Simple_repeat Simple_repeat 2 24 0 238 250 0 28 chr6 178404412 178404484 -4010758 + T-rich Low_complexity Low_complexity 5 74 0 1247 181 128 45 chr6 178406278 178406615 -4008627 + MLT1A1 LTR MaLR 1 365 0 2674 287 107 39 chr6 178407080 178407591 -4007651 - L1MC4 LINE L1 -1 8041 7566 1816 162 0 10 chr6 178407591 178407888 -4007354 - AluJb SINE Alu -17 295 2 2674 287 107 39 chr6 178407888 178409592 -4005650 - L1MC4 LINE L1 -476 7566 5684 484 299 36 10 chr6 178409595 178409789 -4005453 - L1MC4 LINE L1 -2062 5746 5548 2200 148 122 10 chr6 178409855 178410240 -4005002 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr6 178410246 178410267 -4004975 + AT_rich Low_complexity Low_complexity 1 21 0 1861 153 0 0 chr6 178410471 178410746 -4004496 + AluSx SINE Alu 3 277 -35 249 33 0 0 chr6 178410746 178410776 -4004466 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 362 298 25 8 chr6 178410789 178410910 -4004332 + MIR SINE MIR 34 156 -106 553 101 20 0 chr6 178410978 178411077 -4004165 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 487 317 11 67 chr6 178411128 178411308 -4003934 + MIR3 SINE MIR 32 201 -7 22 56 0 0 chr6 178411391 178411427 -4003815 + AT_rich Low_complexity Low_complexity 1 36 0 250 245 0 0 chr6 178411634 178411683 -4003559 + polypurine Low_complexity Low_complexity 3 51 0 541 105 35 42 chr6 178411683 178411826 -4003416 + GA-rich Low_complexity Low_complexity 2 143 0 245 135 0 0 chr6 178415898 178415935 -3999307 + MLT1J1 LTR MaLR 67 103 -343 819 237 12 0 chr6 178416361 178416534 -3998708 - MER45A DNA AcHobo 0 178 4 1397 209 163 27 chr6 178416958 178417399 -3997843 + MLT1D LTR MaLR 5 505 0 182 182 164 36 chr6 178417522 178417577 -3997665 + L2 LINE L2 2654 2715 -599 254 184 0 0 chr6 178417777 178417826 -3997416 + L1MC4 LINE L1 6655 6703 -1339 1917 213 49 8 chr6 178417839 178418339 -3996903 - L1MB3 LINE L1 -15 6168 5656 598 151 19 9 chr6 178418442 178418548 -3996694 - HERV15 LTR ERV1 -1329 7406 7300 40 37 0 0 chr6 178419570 178419624 -3995618 + GC_rich Low_complexity Low_complexity 1 54 0 495 233 0 0 chr6 178422327 178422456 -3992786 + (TG)n Simple_repeat Simple_repeat 1 129 0 1162 243 61 19 chr6 178423626 178424005 -3991237 - MLT1C LTR MaLR -6 461 67 1135 297 100 23 chr6 178424794 178424818 -3990424 - L2 LINE L2 0 3313 3292 2307 93 0 10 chr6 178424818 178425120 -3990122 + AluSx SINE Alu 1 299 -13 1135 297 100 23 chr6 178425120 178425891 -3989351 - L2 LINE L2 -21 3292 2450 1571 162 111 30 chr6 178425919 178426252 -3988990 - MLT1A1 LTR MaLR -5 360 1 1738 171 10 13 chr6 178426295 178426593 -3988649 + AluJo SINE Alu 2 298 -14 597 264 63 51 chr6 178426621 178427012 -3988230 + L1MEd LINE L1 895 1257 -4862 25 31 0 0 chr6 178428466 178428498 -3986744 + AT_rich Low_complexity Low_complexity 1 32 0 1706 245 102 35 chr6 178428509 178429028 -3986214 + MLT2B3 LTR ERVL 1 554 0 304 256 47 0 chr6 178429245 178429331 -3985911 + L1ME LINE L1 1064 1153 -5481 1730 277 94 29 chr6 178429369 178430761 -3984481 + L1ME LINE L1 1216 2784 -3860 225 0 0 0 chr6 178430761 178430786 -3984456 + (CA)n Simple_repeat Simple_repeat 2 26 0 1730 277 94 29 chr6 178430786 178430893 -3984349 + L1ME LINE L1 2784 2883 -3761 669 279 25 25 chr6 178430896 178431179 -3984063 + L1ME LINE L1 3659 3941 -2703 454 292 56 22 chr6 178431286 178431464 -3983778 + L1ME LINE L1 3940 4123 -2521 4218 189 78 8 chr6 178431585 178432441 -3982801 + L1ME LINE L1 219 1134 -5510 1563 243 89 22 chr6 178432459 178432570 -3982672 + L1ME LINE L1 4692 4794 -1850 4941 136 19 42 chr6 178432570 178433382 -3981860 + MER54B LTR ERVL 1 793 0 1563 243 89 22 chr6 178433382 178433866 -3981376 + L1ME LINE L1 4794 5327 -1317 2101 200 22 65 chr6 178433866 178434414 -3980828 + MLT2B3 LTR ERVL 1 409 -35 303 167 0 0 chr6 178434414 178434480 -3980762 + (TA)n Simple_repeat Simple_repeat 2 67 0 352 233 47 0 chr6 178434486 178434572 -3980670 + L1MC4 LINE L1 6614 6703 -1339 326 113 57 0 chr6 178434607 178434660 -3980582 + MLT2B1 LTR ERVL 464 519 -1 1595 263 64 25 chr6 178434662 178435104 -3980138 + L1ME LINE L1 5324 5747 -917 634 64 13 0 chr6 178435104 178435182 -3980060 + MADE1 DNA Mariner 1 79 -1 1595 263 64 25 chr6 178435182 178435685 -3979557 + L1ME LINE L1 5747 6295 -369 296 136 56 0 chr6 178435714 178435839 -3979403 + (TA)n Simple_repeat Simple_repeat 1 132 0 2159 118 0 0 chr6 178437335 178437632 -3977610 - L1PB1 LINE L1 -3 6148 5852 1687 123 42 46 chr6 178437659 178437976 -3977266 + AluSx SINE Alu 1 316 0 460 323 8 0 chr6 178438072 178438205 -3977037 - MIR3 SINE MIR -17 191 58 969 239 0 39 chr6 178438676 178439135 -3976107 - MSTB-int LTR MaLR -1115 536 2 2268 169 64 17 chr6 178439136 178439543 -3975699 - MSTB LTR MaLR 0 426 1 204 279 18 72 chr6 178440852 178440963 -3974279 - MIR SINE MIR -138 124 20 227 281 146 0 chr6 178444150 178444239 -3971003 - MIR SINE MIR -12 250 149 2034 215 48 42 chr6 178444669 178444905 -3970337 + L1MCa LINE L1 779 1012 -5414 1737 163 78 0 chr6 178444905 178445236 -3970006 + L1MA8 LINE L1 5930 6286 -5 2034 215 48 42 chr6 178445236 178445599 -3969643 + L1MCa LINE L1 1012 1382 -5044 880 251 69 24 chr6 178445613 178445991 -3969251 - L1M4 LINE L1 -3552 2594 2200 2129 131 0 6 chr6 178446699 178447011 -3968231 + AluSg SINE Alu 1 310 0 294 290 10 0 chr6 178448332 178448432 -3966810 + MER5A DNA MER1_type 9 109 -80 24 0 0 0 chr6 178448614 178448638 -3966604 + AT_rich Low_complexity Low_complexity 1 24 0 483 133 40 0 chr6 178448870 178448945 -3966297 + AluSg/x SINE Alu 216 293 -19 433 207 108 9 chr6 178448945 178449056 -3966186 - MER46C DNA MER2_type -206 132 11 1811 164 31 6 chr6 178449227 178449545 -3965697 - L1MA6 LINE L1 0 6300 5975 3192 145 10 41 chr6 178449548 178450129 -3965113 + L1MA7 LINE L1 4000 4562 -1584 795 88 9 9 chr6 178450129 178450243 -3964999 + L1PA7 LINE L1 5895 6008 -146 3523 154 1 38 chr6 178450343 178450998 -3964244 + L1MA7 LINE L1 5340 5970 -321 849 312 118 19 chr6 178451045 178451478 -3963764 - L3 LINE CR1 -37 1540 1065 211 125 42 21 chr6 178453505 178453553 -3961689 + A-rich Low_complexity Low_complexity 2 50 0 1995 161 0 0 chr6 178453923 178454228 -3961014 + AluSx SINE Alu 1 305 -7 425 191 0 45 chr6 178455528 178455638 -3959604 + MIR SINE MIR 58 162 -100 231 227 30 45 chr6 178456429 178456495 -3958747 - L2 LINE L2 -6 3266 3202 470 138 11 23 chr6 178456801 178456888 -3958354 - MER74B LTR ERVL -481 141 56 484 256 17 8 chr6 178457271 178457388 -3957854 + MER5B DNA MER1_type 3 120 -58 1567 161 4 8 chr6 178457591 178457858 -3957384 - L1MA4A LINE L1 -11 6292 6027 1842 323 77 24 chr6 178463189 178463735 -3951507 - ERVL LTR ERVL -962 4802 4286 198 0 0 0 chr6 178463735 178463757 -3951485 + (CAG)n Simple_repeat Simple_repeat 2 23 0 1842 323 77 24 chr6 178463757 178464197 -3951045 - ERVL LTR ERVL -1478 4286 3764 275 353 0 0 chr6 178464281 178464400 -3950842 - ERVL LTR ERVL -1701 3295 3177 367 289 33 33 chr6 178464735 178464895 -3950347 + MIR SINE MIR 19 182 -78 380 202 40 20 chr6 178465041 178465140 -3950102 - L1MDa LINE L1 -3045 4520 4420 3213 151 47 35 chr6 178465141 178465886 -3949356 - L1 LINE L1 -3375 4190 3425 1686 169 4 4 chr6 178465886 178466164 -3949078 - AluSx SINE Alu -16 296 19 3213 151 47 35 chr6 178466164 178466512 -3948730 - L1 LINE L1 -4140 3425 3083 1692 81 78 129 chr6 178466621 178466930 -3948312 + AluSg SINE Alu 1 293 -17 434 280 33 58 chr6 178467132 178467496 -3947746 + L1MEd LINE L1 762 1116 -5003 1313 174 4 0 chr6 178467727 178467963 -3947279 - L1PA6 LINE L1 -1 6153 5917 24 32 0 0 chr6 178468241 178468272 -3946970 + AT_rich Low_complexity Low_complexity 1 31 0 742 174 19 19 chr6 178468276 178468437 -3946805 + L1MA10 LINE L1 6172 6332 -2 184 30 61 0 chr6 178468627 178468660 -3946582 + A-rich Low_complexity Low_complexity 2 36 0 1756 173 20 0 chr6 178468824 178469130 -3946112 - AluSx SINE Alu 0 312 1 588 232 114 27 chr6 178469130 178469350 -3945892 + Charlie2 DNA MER1_type 73 311 -2471 2243 108 3 13 chr6 178469661 178469968 -3945274 + AluSx SINE Alu 1 304 -8 1412 82 0 0 chr6 178470919 178471089 -3944153 - AluSq SINE Alu -143 170 1 239 297 27 74 chr6 178471741 178471889 -3943353 - MIR SINE MIR -36 226 86 4350 168 13 17 chr6 178472701 178473492 -3941750 - L1 LINE L1 -984 5162 4374 1994 120 45 7 chr6 178473492 178473783 -3941459 - AluSc SINE Alu -3 306 5 4350 168 13 17 chr6 178473783 178473866 -3941376 - L1 LINE L1 -1772 4374 4292 2903 130 0 0 chr6 178473863 178474363 -3940879 + L1M2 LINE L1 5183 5682 -615 * 2302 95 7 0 chr6 178474480 178474774 -3940468 - AluSq SINE Alu -17 296 1 1655 247 29 18 chr6 178474779 178475329 -3939913 - L1MDa LINE L1 -3382 4183 3628 1407 104 76 0 chr6 178475330 178475541 -3939701 - AluSg/x SINE Alu -14 298 72 3267 187 78 6 chr6 178475543 178476354 -3938888 - L1MDa LINE L1 -3930 3635 2767 1078 47 0 0 chr6 178476569 178476697 -3938545 + AluY SINE Alu 179 306 -5 340 289 88 0 chr6 178477820 178477934 -3937308 + MIR SINE MIR 33 156 -106 1905 126 4 7 chr6 178478083 178478361 -3936881 - AluSx SINE Alu -9 303 27 2574 230 65 51 chr6 178478657 178479427 -3935815 - L1MEc LINE L1 -3107 3108 2345 1872 113 85 20 chr6 178479427 178479720 -3935522 - AluSx SINE Alu 0 312 1 2574 230 65 51 chr6 178479720 178480028 -3935214 - L1MEc LINE L1 -3870 2345 2043 2039 119 0 0 chr6 178480833 178481102 -3934140 + AluSx SINE Alu 13 281 -31 495 0 0 0 chr6 178481105 178481160 -3934082 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 255 299 47 9 chr6 178481724 178481831 -3933411 - MIR SINE MIR -35 227 117 1821 168 0 26 chr6 178483852 178484162 -3931080 - AluJo SINE Alu -10 302 1 401 182 78 0 chr6 178485085 178485130 -3930112 + AluS SINE Alu 3 43 -270 2768 74 8 0 chr6 178485130 178485482 -3929760 + THE1A LTR MaLR 1 355 0 401 182 78 0 chr6 178485482 178485513 -3929729 + AluS SINE Alu 43 85 -228 7991 159 25 11 chr6 178485613 178487258 -3927984 - L1PBa LINE L1 -3761 3101 1392 591 215 12 92 chr6 178487341 178487424 -3927818 - Charlie2 DNA MER1_type -300 2562 2474 2103 133 3 0 chr6 178487424 178487717 -3927525 - AluSp SINE Alu -19 294 1 591 215 12 92 chr6 178487717 178487754 -3927488 - Charlie2 DNA MER1_type -388 2474 2436 263 27 0 27 chr6 178487754 178487791 -3927451 + (CA)n Simple_repeat Simple_repeat 2 37 0 591 215 12 92 chr6 178487791 178488004 -3927238 - Charlie2 DNA MER1_type -426 2436 2255 246 320 133 8 chr6 178488079 178488207 -3927035 - Charlie2 DNA MER1_type -2469 313 170 314 295 246 18 chr6 178488544 178488575 -3926667 + L2 LINE L2 1743 1766 -1548 1157 187 81 68 chr6 178488575 178488944 -3926298 - MLT1A2 LTR MaLR 0 374 1 314 295 246 18 chr6 178488944 178489417 -3925825 + L2 LINE L2 1766 2362 -952 206 291 63 102 chr6 178489726 178489964 -3925278 + L2 LINE L2 2776 3002 -311 425 233 19 29 chr6 178490070 178490084 -3925158 + L2 LINE L2 3170 3183 -89 2666 24 3 0 chr6 178490084 178490381 -3924861 - AluY SINE Alu -13 298 1 425 233 19 29 chr6 178490381 178490469 -3924773 + L2 LINE L2 3183 3271 -1 23 0 0 0 chr6 178490469 178490492 -3924750 + AT_rich Low_complexity Low_complexity 1 23 0 420 255 25 50 chr6 178490874 178491035 -3924207 - MLT1L LTR MaLR -38 577 421 630 319 88 28 chr6 178491080 178491510 -3923732 - L2 LINE L2 -719 2595 2140 496 56 90 34 chr6 178491529 178491618 -3923624 - L1PA13 LINE L1 -3 6160 6067 516 96 0 12 chr6 178491737 178491820 -3923422 - L1MA5A LINE L1 -4 6293 6212 497 204 75 20 chr6 178491831 178491978 -3923264 + L1MA5A LINE L1 6085 6239 -58 275 241 43 93 chr6 178493516 178493678 -3921564 - MIR SINE MIR -89 173 20 3938 162 0 5 chr6 178496583 178497195 -3918047 - MER52A LTR ERV1 0 1755 1147 1122 205 139 86 chr6 178497531 178497961 -3917281 + MLT1C LTR MaLR 6 458 -9 312 259 122 38 chr6 178498500 178498763 -3916479 - MLT1H1 LTR MaLR -5 537 220 25 31 0 0 chr6 178499329 178499361 -3915881 + AT_rich Low_complexity Low_complexity 1 32 0 791 215 14 47 chr6 178499927 178500139 -3915103 + MER52A LTR ERV1 6 350 -928 * 951 207 0 0 chr6 178500133 178500302 -3914940 + MER52A LTR ERV1 525 693 -1062 1950 150 17 0 chr6 178501840 178502140 -3913102 - AluSx SINE Alu -5 307 3 216 302 179 0 chr6 178502305 178502411 -3912831 + L3 LINE CR1 494 618 -959 189 237 102 17 chr6 178502688 178502747 -3912495 + L3 LINE CR1 982 1045 -532 180 200 322 11 chr6 178502829 178502919 -3912323 + L3 LINE CR1 1177 1294 -283 5402 131 11 7 chr6 178502949 178504053 -3911189 - L1P4 LINE L1 -578 5590 4481 1309 168 4 21 chr6 178504153 178504391 -3910851 + AluJb SINE Alu 74 307 -5 13566 119 17 12 chr6 178505559 178505679 -3909563 - Charlie3 DNA MER1_type 0 2706 2588 1954 149 0 3 chr6 178505679 178505974 -3909268 - AluSx SINE Alu -1 311 18 13566 119 17 12 chr6 178505974 178507869 -3907373 - Charlie3 DNA MER1_type -118 2588 682 261 0 0 0 chr6 178508148 178508177 -3907065 + (CAA)n Simple_repeat Simple_repeat 2 30 0 536 151 41 10 chr6 178508323 178508621 -3906621 + (CA)n Simple_repeat Simple_repeat 1 307 0 255 239 98 11 chr6 178509116 178509208 -3906034 + MLT1J2 LTR MaLR 84 183 -267 423 210 10 0 chr6 178509797 178509897 -3905345 + MER5A DNA MER1_type 9 109 -80 26 0 0 0 chr6 178510077 178510103 -3905139 + AT_rich Low_complexity Low_complexity 1 26 0 195 229 0 51 chr6 178511614 178511712 -3903530 + (TATATG)n Simple_repeat Simple_repeat 5 94 -59 1228 228 77 15 chr6 178511712 178512036 -3903206 + MER2 DNA MER2_type 1 344 0 195 229 0 51 chr6 178512036 178512094 -3903148 + (TATATG)n Simple_repeat Simple_repeat 94 153 0 2234 217 35 9 chr6 178512197 178512777 -3902465 + L1ME LINE L1 4390 4984 -1162 1954 274 34 34 chr6 178512777 178513620 -3901622 - L1MEc LINE L1 -3352 3589 2790 335 298 25 13 chr6 178514526 178514684 -3900558 - L1MEc LINE L1 -6194 229 70 4065 149 32 10 chr6 178515971 178516667 -3898575 + MER50 LTR ERV1 1 711 -23 292 234 8 81 chr6 178516668 178516792 -3898450 + L1M4 LINE L1 2407 2521 -3625 10512 93 10 3 chr6 178516893 178518262 -3896980 + Charlie3 DNA MER1_type 2 1380 -1330 8719 166 13 11 chr6 178518364 178519966 -3895276 - L1P LINE L1 -1424 4722 3117 441 269 12 64 chr6 178519977 178520148 -3895094 + L1ME LINE L1 5583 5744 -422 2383 81 0 0 chr6 178520638 178520947 -3894295 - AluSg1 SINE Alu 0 309 1 274 307 18 9 chr6 178521883 178521997 -3893245 + L1ME LINE L1 5637 5751 -370 1773 137 42 36 chr6 178522313 178522648 -3892594 - MER1B DNA MER1_type 0 337 1 1539 164 119 4 chr6 178523319 178523588 -3891654 - AluSc SINE Alu -9 300 1 2275 138 65 20 chr6 178524111 178524509 -3890733 - MSTA LTR MaLR -12 416 1 6981 179 54 36 chr6 178524509 178526042 -3889200 - MSTB-int LTR MaLR 0 1651 3 2305 153 64 15 chr6 178526044 178526450 -3888792 - MSTB LTR MaLR 0 426 1 236 302 0 0 chr6 178526946 178527009 -3888233 + L3 LINE CR1 980 1042 -535 266 322 61 11 chr6 178528773 178528953 -3886289 + MIR SINE MIR 9 197 -65 2305 93 7 3 chr6 178528954 178529256 -3885986 + AluSp SINE Alu 2 304 -9 1716 173 0 22 chr6 178529625 178529937 -3885305 - AluJo SINE Alu -7 305 1 1939 153 3 3 chr6 178530015 178530322 -3884920 - AluJb SINE Alu -5 307 1 1900 173 133 60 chr6 178530507 178530987 -3884255 - MLT2B1 LTR ERVL 0 520 6 1449 190 46 14 chr6 178531242 178531526 -3883716 + AluJo SINE Alu 1 293 -19 272 143 0 0 chr6 178532046 178532088 -3883154 - MER110 LTR ERV1 -29 462 421 316 250 74 48 chr6 178532207 178532377 -3882865 + L1ME LINE L1 5518 5692 -478 573 178 43 87 chr6 178532406 178532637 -3882605 + L1MC5 LINE L1 7609 7829 -132 2229 102 20 13 chr6 178534314 178534617 -3880625 - AluSg SINE Alu -5 305 1 270 301 68 0 chr6 178534721 178534854 -3880388 + L2 LINE L2 2174 2315 -999 501 289 97 13 chr6 178534859 178535087 -3880155 + L2 LINE L2 2478 2724 -590 1624 178 49 0 chr6 178535526 178535812 -3879430 + AluJo SINE Alu 3 302 -10 5275 238 20 61 chr6 178536219 178537637 -3877605 - MSTD-int LTR MaLR -375 1360 1 1058 174 115 41 chr6 178537637 178537923 -3877319 - MSTD LTR MaLR 0 396 60 375 261 0 0 chr6 178537933 178538021 -3877221 - MSTD LTR MaLR -340 88 1 585 323 39 49 chr6 178538150 178538238 -3877004 - L1M4 LINE L1 -1005 5141 5054 2413 135 64 15 chr6 178538238 178538646 -3876596 + MSTA LTR MaLR 1 428 0 585 323 39 49 chr6 178538646 178539229 -3876013 - L1M4 LINE L1 -1092 5054 4477 707 299 116 29 chr6 178540793 178541481 -3873761 - L1M4 LINE L1 -1763 4383 3609 1771 171 17 11 chr6 178541481 178541768 -3873474 + AluJo SINE Alu 4 292 -20 707 299 116 29 chr6 178541768 178541908 -3873334 - L1M4 LINE L1 -2537 3609 3483 662 241 80 0 chr6 178542971 178543133 -3872109 + MER66A LTR ERV1 304 478 0 288 77 0 0 chr6 178545473 178545512 -3869730 + (CA)n Simple_repeat Simple_repeat 1 39 0 2570 49 0 3 chr6 178545794 178546100 -3869142 - AluY SINE Alu -6 305 1 241 220 68 110 chr6 178546430 178546548 -3868694 + MLT1K LTR MaLR 367 479 -109 233 327 19 19 chr6 178546801 178546905 -3868337 + MER94 DNA DNA 24 127 -7 1343 236 6 36 chr6 178547626 178547961 -3867281 - L1MC4 LINE L1 -172 7870 7546 21 36 0 0 chr6 178548109 178548137 -3867105 + AT_rich Low_complexity Low_complexity 1 28 0 2056 130 13 3 chr6 178552217 178552524 -3862718 + AluSq SINE Alu 1 310 -3 231 293 93 67 chr6 178552768 178552918 -3862324 + MIR3 SINE MIR 1 154 -54 421 235 29 10 chr6 178553791 178553893 -3861349 - MIR SINE MIR -61 147 44 1510 247 55 62 chr6 178554785 178554844 -3860398 + L1ME3A LINE L1 4978 5036 -1134 14902 71 4 2 chr6 178554844 178555097 -3860145 - L1PA6 LINE L1 0 6154 5903 2367 101 3 0 chr6 178555097 178555404 -3859838 + AluSx SINE Alu 1 308 -4 14902 71 4 2 chr6 178555404 178557886 -3857356 - L1PA6 LINE L1 -251 5903 3435 2011 111 4 0 chr6 178557891 178558162 -3857080 - AluSx SINE Alu -7 305 34 1510 247 55 62 chr6 178558162 178559235 -3856007 + L1ME3A LINE L1 5040 6111 -59 1581 158 0 0 chr6 178559290 178559562 -3855680 + L1P LINE L1 5014 5285 -861 231 192 144 64 chr6 178559993 178560122 -3855120 + MIR SINE MIR 47 176 -86 232 25 75 0 chr6 178560296 178560336 -3854906 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7262 38 1 2 chr6 178560337 178561201 -3854041 - L1PA3 LINE L1 0 6155 5293 549 208 82 49 chr6 178565676 178565736 -3849506 - MER5A DNA MER1_type 0 189 132 2515 45 0 3 chr6 178565736 178566026 -3849216 + AluY SINE Alu 1 289 -22 549 208 82 49 chr6 178566026 178566148 -3849094 - MER5A DNA MER1_type -57 132 1 234 351 30 15 chr6 178566155 178566289 -3848953 - MER5B DNA MER1_type 0 178 43 2052 134 3 10 chr6 178567480 178567778 -3847464 - AluSx SINE Alu -16 296 1 231 186 0 0 chr6 178572801 178572844 -3842398 + (CCCCG)n Simple_repeat Simple_repeat 4 46 0 206 227 13 0 chr6 178576734 178576809 -3838433 + (TA)n Simple_repeat Simple_repeat 1 76 0 34 55 0 0 chr6 178576809 178576864 -3838378 + AT_rich Low_complexity Low_complexity 1 55 0 2556 250 52 34 chr6 178576866 178578253 -3836989 - L1ME1 LINE L1 -5 6659 5247 826 200 71 0 chr6 178578253 178578408 -3836834 + FAM SINE Alu 1 166 -9 2556 250 52 34 chr6 178578408 178578703 -3836539 - L1ME1 LINE L1 -1417 5247 4959 738 243 41 18 chr6 178578802 178579020 -3836222 - MLT1J LTR MaLR -36 475 253 288 300 47 79 chr6 178579155 178579585 -3835657 + HAL1b LINE L1 122 537 -811 188 316 103 17 chr6 178582207 178582324 -3832918 + MIR SINE MIR 132 258 -4 428 250 71 12 chr6 178582511 178582679 -3832563 - L1ME1 LINE L1 -4595 2230 2053 1965 111 0 0 chr6 178582701 178582953 -3832289 - AluSx SINE Alu -29 283 32 966 195 43 19 chr6 178582953 178583210 -3832032 - L1M4 LINE L1 -807 5339 5077 1262 287 71 39 chr6 178583234 178584271 -3830971 - L1ME1 LINE L1 -4741 1905 914 431 305 80 11 chr6 178584265 178584452 -3830790 - L1ME1 LINE L1 -6011 531 332 * 346 171 0 26 chr6 178584446 178584522 -3830720 - L1MC/D LINE L1 -599 5745 5672 * 247 308 56 9 chr6 178584600 178584707 -3830535 + L1ME LINE L1 208 319 -5886 4103 210 48 9 chr6 178584713 178586002 -3829240 + L1MB7 LINE L1 4843 6179 -5 429 316 84 14 chr6 178585997 178586212 -3829030 + L1MC/D LINE L1 5444 5673 -2135 * 474 208 175 0 chr6 178586321 178586475 -3828767 + L1MD3 LINE L1 7801 7981 -14 182 297 176 37 chr6 178587680 178588135 -3827107 + L2 LINE L2 1977 2494 -820 272 196 0 0 chr6 178589148 178589194 -3826048 - MER110 LTR ERV1 -445 46 1 1600 177 70 104 chr6 178589873 178590283 -3824959 + L1ME LINE L1 1817 2240 -4156 688 168 23 15 chr6 178590283 178590414 -3824828 + FLAM_C SINE Alu 1 132 -1 1600 177 70 104 chr6 178590414 178590431 -3824811 + L1ME LINE L1 2240 2256 -4140 2335 78 0 0 chr6 178590431 178590761 -3824481 + AluY SINE Alu 1 330 0 1600 177 70 104 chr6 178590761 178590906 -3824336 + L1ME LINE L1 2256 2371 -4025 1450 222 13 7 chr6 178590907 178591209 -3824033 + AluJb SINE Alu 1 304 -8 2108 130 0 0 chr6 178591221 178591505 -3823737 + AluSx SINE Alu 5 288 -24 392 258 0 40 chr6 178591551 178591577 -3823665 + L1ME LINE L1 2304 2329 -3961 246 32 0 0 chr6 178591577 178591608 -3823634 + (GA)n Simple_repeat Simple_repeat 2 32 0 392 258 0 40 chr6 178591608 178591752 -3823490 + L1ME LINE L1 2329 2506 -3784 749 244 10 31 chr6 178592069 178592262 -3822980 + MLT1H LTR MaLR 23 211 -338 294 130 0 19 chr6 178592424 178592478 -3822764 + MLT1G LTR MaLR 533 585 -5 276 218 73 27 chr6 178593047 178593157 -3822085 + ERVL LTR ERVL 3385 3499 -2265 2622 55 0 0 chr6 178594031 178594342 -3820900 + AluY SINE Alu 1 311 0 2394 100 0 3 chr6 178594803 178595113 -3820129 + AluSc SINE Alu 1 309 0 2030 160 73 28 chr6 178595600 178596134 -3819108 - MLT2A2 LTR ERVL 0 554 1 1679 87 18 13 chr6 178597531 178597760 -3817482 + MER30 DNA MER1_type 1 230 0 324 130 0 0 chr6 178597860 178597906 -3817336 - THE1B LTR MaLR -1 363 318 1720 170 22 0 chr6 178598007 178598283 -3816959 - AluSx SINE Alu -30 282 1 694 196 118 32 chr6 178598283 178598503 -3816739 + Charlie2 DNA MER1_type 73 311 -2471 216 250 33 0 chr6 178598684 178598744 -3816498 - MIR SINE MIR -12 250 189 310 311 76 69 chr6 178599265 178599728 -3815514 - L2 LINE L2 -22 3291 2826 482 269 28 48 chr6 178599952 178600127 -3815115 - Charlie2 DNA MER1_type -13 2849 2679 2106 123 3 10 chr6 178600127 178600427 -3814815 + AluSx SINE Alu 1 298 -14 482 269 28 48 chr6 178600427 178600500 -3814742 - Charlie2 DNA MER1_type -183 2679 2606 23 0 0 0 chr6 178600519 178600542 -3814700 + AT_rich Low_complexity Low_complexity 1 23 0 3497 111 14 4 chr6 178600542 178601058 -3814184 - L1PB1 LINE L1 -1 6150 5630 10458 197 25 10 chr6 178601058 178601783 -3813459 - L1 LINE L1 -1864 4282 3569 2022 136 23 0 chr6 178601783 178602084 -3813158 - AluSx SINE Alu -4 308 1 10458 197 25 10 chr6 178602084 178603882 -3811360 - L1 LINE L1 -2577 3569 1743 471 235 112 31 chr6 178603999 178604195 -3811047 - L1ME2 LINE L1 -78 6086 5875 533 207 144 16 chr6 178604215 178604403 -3810839 - L1MC4a LINE L1 0 7808 7597 1774 234 73 40 chr6 178604406 178605170 -3810072 - L1ME2 LINE L1 -335 5829 5040 415 219 6 44 chr6 178605209 178605392 -3809850 + CT-rich Low_complexity Low_complexity 4 179 0 674 185 6 22 chr6 178605551 178605729 -3809513 + CT-rich Low_complexity Low_complexity 1 175 0 1258 168 14 0 chr6 178605729 178605943 -3809299 - AluJo SINE Alu -9 303 87 4493 270 80 23 chr6 178606167 178608108 -3807134 - L1ME2 LINE L1 -1283 4863 2812 1809 208 18 24 chr6 178608101 178608552 -3806690 + L1M4 LINE L1 3985 4432 -1714 * 1276 197 24 4 chr6 178808560 178808809 -3606433 - MLT1E3 LTR MaLR -370 254 1 2883 224 71 1 chr6 178808810 178809645 -3605597 + L1MDa LINE L1 1573 2465 -4075 2409 244 67 21 chr6 178809748 178809899 -3605343 - L1M4 LINE L1 -2893 3253 3110 180 0 0 0 chr6 178809899 178809919 -3605323 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2409 244 67 21 chr6 178809919 178810802 -3604440 - L1M4 LINE L1 -3036 3110 2172 329 357 113 0 chr6 178810906 178811119 -3604123 + L1M4 LINE L1 3920 4156 -1990 442 317 78 37 chr6 178811172 178811415 -3603827 + L1M4 LINE L1 4351 4603 -1543 2471 74 13 0 chr6 178812284 178812583 -3602659 - AluSc SINE Alu -6 303 1 258 306 0 0 chr6 178813437 178813499 -3601743 - MER58 DNA MER1_type -162 62 1 228 258 15 0 chr6 178814403 178814469 -3600773 + L1MDa LINE L1 1492 1558 -4982 2196 101 0 61 chr6 178814514 178814842 -3600400 - AluSc SINE Alu -1 308 1 2070 132 0 0 chr6 178814842 178815122 -3600120 - AluSg SINE Alu -30 280 1 388 82 16 0 chr6 178815131 178815192 -3600050 - MLT1E3 LTR MaLR -9 615 554 215 335 0 11 chr6 178815325 178815504 -3599738 + (TCTG)n Simple_repeat Simple_repeat 4 180 0 507 293 3 0 chr6 178815561 178815859 -3599383 + (TATATG)n Simple_repeat Simple_repeat 1 299 0 282 353 12 0 chr6 178815884 178816054 -3599188 + (TATG)n Simple_repeat Simple_repeat 3 174 0 412 304 0 22 chr6 178816115 178816296 -3598946 + (TCTCTG)n Simple_repeat Simple_repeat 1 177 0 260 161 36 0 chr6 178816758 178816814 -3598428 + Tigger3(Golem) DNA MER2_type 2634 2691 -338 * 406 229 38 0 chr6 178816803 178816908 -3598334 + Tigger3(Golem) DNA MER2_type 2583 2691 -338 * 439 190 50 0 chr6 178816901 178817001 -3598241 + Tigger3(Golem) DNA MER2_type 2587 2691 -338 * 528 175 19 0 chr6 178816994 178817097 -3598145 + Tigger3(Golem) DNA MER2_type 2587 2691 -338 * 1865 185 85 10 chr6 178817090 178817501 -3597741 + Tigger3(Golem) DNA MER2_type 2587 3028 -1 3467 210 45 9 chr6 178817504 178818374 -3596868 - L1MA9 LINE L1 -204 6108 5199 649 164 23 58 chr6 178818631 178818802 -3596440 + L1MC3 LINE L1 7345 7509 -276 227 286 0 0 chr6 178818966 178819029 -3596213 + G-rich Low_complexity Low_complexity 1 63 0 426 292 53 12 chr6 178819428 178819632 -3595610 + L1MB7 LINE L1 5296 5517 -645 342 0 0 0 chr6 178820813 178820851 -3594391 + (T)n Simple_repeat Simple_repeat 1 38 0 309 207 0 0 chr6 178821066 178821153 -3594089 + GA-rich Low_complexity Low_complexity 1 87 0 437 258 101 22 chr6 178821885 178822063 -3593179 + MER20 DNA MER1_type 28 219 0 319 226 131 24 chr6 178823414 178823498 -3591744 - L1M4 LINE L1 -2972 3174 3082 868 235 15 0 chr6 178827965 178828165 -3587077 + Tigger1 DNA MER2_type 1 203 -2215 212 114 0 45 chr6 178830513 178830557 -3584685 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 746 274 10 0 chr6 178830667 178830871 -3584371 + L1MB7 LINE L1 5629 5834 -350 527 262 22 27 chr6 178831556 178831739 -3583503 - MLT1A2 LTR MaLR -20 354 173 435 224 0 0 chr6 178831763 178831870 -3583372 + GA-rich Low_complexity Low_complexity 2 108 0 601 207 40 27 chr6 178831895 178832045 -3583197 - MLT1A2 LTR MaLR -222 152 1 472 189 0 63 chr6 178832632 178832822 -3582420 + (CCCA)n Simple_repeat Simple_repeat 1 178 0 2023 161 92 0 chr6 178834557 178834948 -3580294 - MSTA LTR MaLR -1 427 1 282 252 81 9 chr6 178835178 178835289 -3579953 - HAL1 LINE L1 -389 2118 2000 354 268 98 49 chr6 178835697 178835880 -3579362 - MLT1F LTR MaLR -93 456 265 2007 93 23 0 chr6 178836045 178836303 -3578939 - AluSx SINE Alu -10 302 39 389 321 102 0 chr6 178836476 178836613 -3578629 - MLT1F LTR MaLR -390 152 2 369 365 18 0 chr6 178836840 178837007 -3578235 - MIR SINE MIR -34 228 59 417 359 24 0 chr6 178837782 178837952 -3577290 + MER69A DNA AcHobo 4 177 0 382 285 51 6 chr6 178838026 178838184 -3577058 + MER117 DNA MER1_type 2 166 -31 2484 220 59 44 chr6 178839550 178840656 -3574586 - L1MC/D LINE L1 -431 5811 4677 1892 139 0 0 chr6 178840656 178840922 -3574320 - AluY SINE Alu -2 309 44 2484 220 59 44 chr6 178840922 178841067 -3574175 - L1MC/D LINE L1 -1565 4677 4536 202 333 30 23 chr6 178841495 178841627 -3573615 - L2 LINE L2 -784 2530 2398 2110 223 80 104 chr6 178841667 178842733 -3572509 + L1ME1 LINE L1 3073 4112 -2034 1810 236 75 54 chr6 178843009 178843764 -3571478 + L1ME1 LINE L1 4094 4864 -1282 * 8093 35 0 0 chr6 178843753 178844761 -3570481 - L1P LINE L1 -1043 5103 4096 306 227 146 18 chr6 178844761 178844871 -3570371 + L1ME1 LINE L1 4857 4980 -1166 498 140 0 0 chr6 178844976 178845090 -3570152 + (CA)n Simple_repeat Simple_repeat 2 115 0 328 308 180 0 chr6 178846479 178846651 -3568591 - MIR SINE MIR -45 217 15 266 301 178 51 chr6 178851630 178851866 -3563376 - L1ME LINE L1 -408 5762 5497 255 343 67 9 chr6 178851989 178852094 -3563148 + L2 LINE L2 3192 3302 -11 290 259 175 6 chr6 178852272 178852438 -3562804 - MLT2E LTR ERVL -248 380 187 410 341 78 39 chr6 178852955 178853360 -3561882 - L1ME LINE L1 -1404 1037 757 510 156 22 44 chr6 178853604 178853784 -3561458 + (TCTCTG)n Simple_repeat Simple_repeat 3 178 0 224 353 83 0 chr6 178854601 178854734 -3560508 + MIR SINE MIR 10 153 -109 203 304 118 0 chr6 178855575 178855677 -3559565 - MIR SINE MIR -84 178 65 517 139 12 0 chr6 178856940 178857026 -3558216 - L1MB4 LINE L1 0 6180 6094 282 56 0 0 chr6 178863739 178863775 -3551467 + (T)n Simple_repeat Simple_repeat 1 36 0 353 246 85 31 chr6 178863891 178864021 -3551221 + MIR3 SINE MIR 46 182 -26 23 68 0 0 chr6 178865312 178865356 -3549886 + AT_rich Low_complexity Low_complexity 1 44 0 2602 250 63 19 chr6 178866364 178867333 -3547909 + L1ME1 LINE L1 5183 6327 -3 243 300 25 0 chr6 178867345 178867425 -3547817 - MIR SINE MIR -130 132 51 511 258 51 46 chr6 178867732 178868077 -3547165 - MLT1C LTR MaLR -1 389 59 283 328 8 24 chr6 178869784 178869909 -3545333 + G-rich Low_complexity Low_complexity 1 123 0 328 139 0 46 chr6 178869909 178870017 -3545225 + (TGGA)n Simple_repeat Simple_repeat 2 104 0 412 183 108 4 chr6 178873401 178873503 -3541739 + MSTD LTR MaLR 6 118 -247 849 282 0 5 chr6 178877124 178877330 -3537912 + MIR SINE MIR 41 245 -17 256 380 87 24 chr6 178878702 178878989 -3536253 + L2 LINE L2 2921 3225 -88 208 224 20 0 chr6 178880448 178880497 -3534745 + CT-rich Low_complexity Low_complexity 3 52 0 454 281 85 33 chr6 178884422 178884575 -3530667 - MER5B DNA MER1_type 0 178 18 207 351 9 18 chr6 178885533 178885647 -3529595 + (CA)n Simple_repeat Simple_repeat 2 114 0 214 357 109 23 chr6 178888415 178888681 -3526561 + L2 LINE L2 2281 2569 -745 226 227 187 0 chr6 178889366 178889441 -3525801 - MLT1C LTR MaLR -296 94 6 1096 162 10 0 chr6 178890504 178890708 -3524534 + MER72 LTR ERV1 1 206 -516 212 371 0 0 chr6 178891754 178891824 -3523418 - L2 LINE L2 -1 3271 3202 231 36 0 0 chr6 178894898 178894926 -3520316 + (CGGGGG)n Simple_repeat Simple_repeat 4 31 0 406 276 92 19 chr6 178895633 178896011 -3519231 + MLT1B LTR MaLR 1 459 -8 969 74 0 0 chr6 178896576 178896724 -3518518 + (TC)n Simple_repeat Simple_repeat 1 148 0 184 260 68 27 chr6 178899484 178899557 -3515685 - MER5A DNA MER1_type -108 81 6 269 271 7 33 chr6 178899947 178900098 -3515144 + (CACCC)n Simple_repeat Simple_repeat 3 149 0 269 272 17 29 chr6 178900155 178900328 -3514914 + (CACCC)n Simple_repeat Simple_repeat 3 173 0 235 262 14 35 chr6 178900723 178900868 -3514374 + (CACCC)n Simple_repeat Simple_repeat 3 144 0 2102 91 7 0 chr6 178903365 178903640 -3511602 - AluSx SINE Alu -35 277 1 255 57 0 0 chr6 178903640 178903675 -3511567 - Alu SINE Alu -258 44 10 412 128 11 75 chr6 178903678 178903772 -3511470 - AluJ/FLAM SINE Alu -224 88 1 599 349 27 1 chr6 178903915 178904142 -3511100 + MIR SINE MIR 10 241 -21 495 263 132 13 chr6 178905807 178906084 -3509158 - MSTD LTR MaLR 0 396 36 346 108 31 0 chr6 178907032 178907097 -3508145 + CT-rich Low_complexity Low_complexity 1 67 0 236 333 0 12 chr6 178909009 178909171 -3506071 + (ATG)n Simple_repeat Simple_repeat 3 162 0 233 315 0 22 chr6 178909376 178909554 -3505688 + (ATG)n Simple_repeat Simple_repeat 3 176 0 327 224 206 0 chr6 178909755 178909920 -3505322 - MER5C DNA MER1_type -12 312 114 1222 210 42 39 chr6 178910024 178910193 -3505049 + MLT1A2 LTR MaLR 1 173 -201 2067 121 7 0 chr6 178910193 178910498 -3504744 + AluY SINE Alu 1 307 -4 1222 210 42 39 chr6 178910498 178910661 -3504581 + MLT1A2 LTR MaLR 173 334 -40 1937 103 7 21 chr6 178911963 178912245 -3502997 + AluSx SINE Alu 35 312 0 861 238 0 6 chr6 178912248 178912429 -3502813 + AluJo/FRAM SINE Alu 129 308 -4 1077 242 27 10 chr6 178913290 178913588 -3501654 - L1ME LINE L1 -392 5772 5470 2348 125 44 6 chr6 178914938 178915299 -3499943 - THE1C LTR MaLR 0 375 1 345 347 58 26 chr6 178916726 178916916 -3498326 - L1ME4a LINE L1 -199 5922 5727 280 185 217 0 chr6 178916959 178917051 -3498191 + LTR40a LTR ERVL 52 163 -356 375 252 28 0 chr6 178917160 178917267 -3497975 + LTR40b LTR ERVL 352 461 -1 316 279 0 22 chr6 178922919 178923098 -3492144 + (CTGTG)n Simple_repeat Simple_repeat 2 176 0 268 274 0 58 chr6 178923206 178923396 -3491846 + (TTGTG)n Simple_repeat Simple_repeat 2 180 0 * 373 275 0 22 chr6 178923348 178923530 -3491712 + (CTGTG)n Simple_repeat Simple_repeat 1 178 0 * 387 210 16 65 chr6 178923413 178923599 -3491643 + (TTGTG)n Simple_repeat Simple_repeat 1 177 0 * 419 268 0 22 chr6 178923565 178923748 -3491494 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 276 305 0 0 chr6 178923685 178923813 -3491429 + (TTGTG)n Simple_repeat Simple_repeat 1 128 0 * 509 285 0 12 chr6 178923779 178924117 -3491125 + (CTGTG)n Simple_repeat Simple_repeat 1 333 0 230 298 0 63 chr6 178926042 178926233 -3489009 + (CGGG)n Simple_repeat Simple_repeat 1 179 0 1818 94 8 8 chr6 178927257 178927512 -3487730 - AluSc SINE Alu -6 303 49 269 373 20 10 chr6 178928144 178928246 -3486996 - MER5B DNA MER1_type -67 111 9 363 105 0 0 chr6 178929128 178929185 -3486057 + (CA)n Simple_repeat Simple_repeat 1 57 0 288 137 0 0 chr6 178929226 178929277 -3485965 + (CA)n Simple_repeat Simple_repeat 2 52 0 624 150 0 0 chr6 178929320 178929433 -3485809 + (CA)n Simple_repeat Simple_repeat 1 113 0 315 136 0 0 chr6 178929475 178929534 -3485708 + (CA)n Simple_repeat Simple_repeat 1 59 0 192 97 0 0 chr6 178929575 178929606 -3485636 + (CA)n Simple_repeat Simple_repeat 1 31 0 186 43 0 0 chr6 178929644 178929667 -3485575 + (CA)n Simple_repeat Simple_repeat 1 23 0 276 158 0 0 chr6 178929708 178929765 -3485477 + (CA)n Simple_repeat Simple_repeat 1 57 0 223 351 14 0 chr6 178929804 178929878 -3485364 + (CATG)n Simple_repeat Simple_repeat 4 78 0 1230 233 100 54 chr6 178930095 178930575 -3484667 + MLT1D LTR MaLR 1 502 -3 191 366 0 14 chr6 178932927 178932998 -3482244 + MIR SINE MIR 193 262 0 1356 174 50 67 chr6 178934462 178934819 -3480423 - Tigger3(Golem) DNA MER2_type -881 2148 1 358 234 75 0 chr6 178934820 178934927 -3480315 + L1MA7 LINE L1 6111 6225 -66 230 265 59 29 chr6 178938393 178938495 -3476747 - MER5A DNA MER1_type -81 108 4 268 191 88 0 chr6 178939596 178939664 -3475578 + MER58A DNA MER1_type 1 74 -33 192 322 140 12 chr6 178940677 178940848 -3474394 + MIR SINE MIR 46 238 -24 742 200 0 0 chr6 178943406 178943531 -3471711 + FLAM_C SINE Alu 3 127 -16 230 331 126 0 chr6 178945622 178945749 -3469493 - MIR3 SINE MIR -65 143 1 1086 193 14 9 chr6 178946752 178946964 -3468278 - AluJo SINE Alu -99 213 1 370 308 62 41 chr6 178947206 178947401 -3467841 - HAL1b LINE L1 -8 1340 1142 2767 155 4 0 chr6 178947791 178948293 -3466949 - MSTA-int LTR MaLR -1147 504 1 1732 164 149 31 chr6 178948293 178948676 -3466566 - MSTA LTR MaLR 0 428 1 213 313 39 55 chr6 178950197 178950325 -3464917 - MER5B DNA MER1_type -49 129 4 479 310 197 0 chr6 178950517 178950888 -3464354 - L1MD3 LINE L1 -12 7983 7540 2084 141 35 51 chr6 178952086 178952678 -3462564 + MER4E LTR ERV1 1 761 -5 485 276 105 0 chr6 178953026 178953178 -3462064 - MER58B DNA MER1_type 0 341 174 1529 134 121 58 chr6 178953261 178953642 -3461600 + MSTA LTR MaLR 24 428 0 351 343 37 15 chr6 178953891 178954025 -3461217 - MIR SINE MIR -79 183 47 2242 129 72 104 chr6 178954130 178954619 -3460623 + MER101 LTR ERV1 1 473 -1 182 333 33 0 chr6 178955737 178955797 -3459445 + MIR SINE MIR 201 262 0 267 329 0 0 chr6 178958140 178958216 -3457026 + GA-rich Low_complexity Low_complexity 1 76 0 325 354 56 0 chr6 178958789 178958950 -3456292 - MIR SINE MIR -92 170 1 349 338 88 66 chr6 178958953 178959258 -3455984 - L1ME LINE L1 -354 5767 5456 907 240 207 7 chr6 178959259 178959563 -3455679 + MLT1A1 LTR MaLR 1 365 0 483 356 6 0 chr6 178960403 178960563 -3454679 + MIR SINE MIR 90 250 -12 207 0 0 0 chr6 178960871 178960894 -3454348 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 282 327 0 39 chr6 179162092 179162196 -3253046 - MER117 DNA MER1_type -4 193 94 6013 194 61 23 chr6 179162277 179163149 -3252093 + L1MA4 LINE L1 3 840 -5488 181 56 28 28 chr6 179163149 179163185 -3252057 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 6013 194 61 23 chr6 179163185 179164661 -3250581 + L1MA4 LINE L1 840 2409 -3919 1320 192 18 0 chr6 179164667 179164891 -3250351 - AluJb SINE Alu -8 304 77 5818 206 19 7 chr6 179164891 179166230 -3249012 + L1MA4 LINE L1 2398 3752 -2576 * 7050 114 4 24 chr6 179166227 179167122 -3248120 + L1MA2 LINE L1 4476 5331 -973 2472 79 0 0 chr6 179167122 179167413 -3247829 + AluY SINE Alu 1 291 -20 7050 114 4 24 chr6 179167413 179168360 -3246882 + L1MA2 LINE L1 5331 6296 -8 8902 181 21 34 chr6 179168366 179169958 -3245284 + L1MA4 LINE L1 3741 5314 -1168 2128 95 4 0 chr6 179169958 179170232 -3245010 + AluSq SINE Alu 39 313 0 8902 181 21 34 chr6 179170232 179171387 -3243855 + L1MA4 LINE L1 5314 6482 0 1924 149 3 20 chr6 179171500 179171796 -3243446 + AluJo SINE Alu 1 291 -21 382 308 83 39 chr6 179171806 179171962 -3243280 + L1M4 LINE L1 4672 4834 -1312 2162 122 0 0 chr6 179172064 179172352 -3242890 - AluSg SINE Alu -18 292 5 23 0 0 0 chr6 179172617 179172640 -3242602 + AT_rich Low_complexity Low_complexity 1 23 0 2214 90 11 0 chr6 179172737 179173016 -3242226 + AluSc SINE Alu 1 282 -27 285 51 0 0 chr6 179173016 179173055 -3242187 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 305 304 10 0 chr6 179173286 179173388 -3241854 + MER58B DNA MER1_type 223 325 -16 1006 196 82 67 chr6 179176358 179176739 -3238503 + MLT2D LTR ERVL 2 476 -39 310 118 18 21 chr6 179176804 179176871 -3238371 + MLT2B3 LTR ERVL 454 554 0 594 244 14 0 chr6 179177735 179178021 -3237221 + (TG)n Simple_repeat Simple_repeat 1 290 0 599 200 12 11 chr6 179178041 179178400 -3236842 + (TG)n Simple_repeat Simple_repeat 1 359 0 210 372 145 0 chr6 179180392 179180537 -3234705 + MER5A DNA MER1_type 24 189 0 45 62 0 0 chr6 179180664 179180744 -3234498 + AT_rich Low_complexity Low_complexity 1 80 0 1812 118 76 25 chr6 179180942 179181298 -3233944 - THE1C LTR MaLR -1 374 1 7309 71 12 247 chr6 179184225 179186006 -3229236 + SVA Other Other 24 1385 -1 27 0 0 0 chr6 179186066 179186093 -3229149 + AT_rich Low_complexity Low_complexity 1 27 0 1551 175 62 44 chr6 179186759 179187147 -3228095 + MLT2C1 LTR ERVL 1 395 -2 193 287 15 0 chr6 179188384 179188520 -3226722 + (CA)n Simple_repeat Simple_repeat 1 138 0 336 309 0 6 chr6 179188583 179189065 -3226177 + (CA)n Simple_repeat Simple_repeat 1 479 0 1677 194 112 26 chr6 179189976 179190441 -3224801 + MLT1D LTR MaLR 1 505 0 588 313 52 7 chr6 179191150 179191441 -3223801 - L2 LINE L2 -899 2415 2112 296 329 53 7 chr6 179191656 179191808 -3223434 + L1MC5 LINE L1 7616 7774 -187 2342 100 3 0 chr6 179193169 179193470 -3221772 + AluSp SINE Alu 1 302 -11 486 258 8 15 chr6 179193832 179193964 -3221278 - MLT1D LTR MaLR -1 566 436 1368 280 158 4 chr6 179194037 179194218 -3221024 + MER82 DNA MER2_type 19 171 -482 1918 128 169 5 chr6 179194218 179194586 -3220656 - MSTA LTR MaLR 0 428 1 1368 280 158 4 chr6 179194586 179194954 -3220288 + MER82 DNA MER2_type 171 653 0 323 39 77 0 chr6 179197535 179197587 -3217655 - L1PA8 LINE L1 -1 6171 6116 424 43 18 0 chr6 179197588 179197650 -3217592 + L1PA7 LINE L1 5806 5868 -263 3357 114 37 29 chr6 179199992 179200587 -3214655 + MER4A LTR ERV1 1 600 0 279 175 6 62 chr6 179201311 179201488 -3213754 + (GTGTG)n Simple_repeat Simple_repeat 5 171 0 364 117 22 62 chr6 179201541 179201720 -3213522 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 253 135 38 45 chr6 179201740 179201873 -3213369 + (GTGTG)n Simple_repeat Simple_repeat 5 136 0 344 224 0 61 chr6 179201877 179202024 -3213218 + (ACGTG)n Simple_repeat Simple_repeat 4 141 0 201 359 22 0 chr6 179202083 179202175 -3213067 - L2 LINE L2 -541 2773 2680 953 228 146 37 chr6 179204009 179204412 -3210830 - MLT1D LTR MaLR -58 447 1 6218 261 71 27 chr6 179204679 179208439 -3206803 - L1MDa LINE L1 -755 5785 1647 397 341 80 0 chr6 179208820 179208996 -3206246 - MIR SINE MIR -1 261 72 320 376 38 19 chr6 179209486 179209643 -3205599 + L1MC5 LINE L1 7792 7951 -10 1077 174 9 14 chr6 179211011 179211230 -3204012 + MLT1A1 LTR MaLR 28 245 -120 292 223 174 16 chr6 179213104 179213225 -3202017 + L2 LINE L2 3165 3304 -9 407 341 22 44 chr6 179213870 179214052 -3201190 + MER5B DNA MER1_type 1 178 0 4834 151 45 34 chr6 179214590 179215634 -3199608 - L1MA5 LINE L1 -33 6267 5214 880 93 16 0 chr6 179216055 179216184 -3199058 + L1PBa LINE L1 1559 1689 -5174 225 292 95 15 chr6 179216930 179217067 -3198175 + L1MA7 LINE L1 6023 6170 -121 * 14424 115 63 19 chr6 179217054 179218833 -3196409 + L1PB1 LINE L1 3 1916 -4947 2025 135 8 42 chr6 179218833 179219210 -3196032 - THE1B LTR MaLR 0 364 1 14424 115 63 19 chr6 179219210 179219858 -3195384 + L1PB1 LINE L1 1916 2535 -4328 1801 147 3 22 chr6 179219858 179220208 -3195034 - MER4A LTR ERV1 0 664 263 567 124 21 10 chr6 179220208 179220305 -3194937 - MER4A LTR ERV1 -566 98 1 6307 101 53 24 chr6 179220316 179221354 -3193888 - MER4A-int LTR ERV1 -2 6596 5529 283 157 0 39 chr6 179221401 179221452 -3193790 - LTR49 LTR ERV1 -284 311 263 198 0 0 0 chr6 179221523 179221545 -3193697 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3233 63 194 144 chr6 179221545 179222315 -3192927 - MER4A-int LTR ERV1 -5784 814 3 1699 141 12 25 chr6 179222320 179222670 -3192572 - MER4A LTR ERV1 0 664 261 432 198 21 10 chr6 179222670 179222766 -3192476 - MER4A LTR ERV1 -566 98 2 13852 173 29 9 chr6 179222767 179225274 -3189968 + L1PB1 LINE L1 2532 4988 -1879 189 0 0 0 chr6 179225274 179225295 -3189947 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 13852 173 29 9 chr6 179225295 179225580 -3189662 + L1PB1 LINE L1 4988 5266 -1601 207 0 0 0 chr6 179225580 179225603 -3189639 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 13852 173 29 9 chr6 179225603 179227237 -3188005 + L1PB1 LINE L1 5266 6865 -2 664 260 78 48 chr6 179228677 179228863 -3186379 - MER69 DNA AcHobo -113 2413 2211 2348 98 0 0 chr6 179228863 179229160 -3186082 - AluSx SINE Alu -15 297 1 664 260 78 48 chr6 179229160 179229304 -3185938 - MER69 DNA AcHobo -315 2211 2073 235 283 50 0 chr6 179229307 179229406 -3185836 - MER69 DNA AcHobo -831 395 292 223 367 0 0 chr6 179232843 179233020 -3182222 + (TGG)n Simple_repeat Simple_repeat 3 179 0 2002 169 12 15 chr6 179238657 179239041 -3176201 + MER57A LTR ERV1 3 387 -16 2387 68 29 23 chr6 179239041 179239348 -3175894 - AluSp SINE Alu -4 309 1 2002 169 12 15 chr6 179239348 179239365 -3175877 + MER57A LTR ERV1 387 403 0 1201 338 80 68 chr6 179244023 179245149 -3170093 + L1MC4a LINE L1 4237 5376 -770 673 271 175 12 chr6 179245276 179245601 -3169641 + L1MC4a LINE L1 5566 5943 -1865 704 237 32 0 chr6 179245924 179246080 -3169162 - L1PB4 LINE L1 -1 6155 5995 249 267 38 38 chr6 179249575 179249680 -3165562 + L2 LINE L2 3197 3301 -12 224 250 129 32 chr6 179250192 179250316 -3164926 + MIR SINE MIR 63 198 -64 231 314 49 0 chr6 179250535 179250637 -3164605 + MIR SINE MIR 110 216 -46 183 350 160 15 chr6 179252200 179252406 -3162836 - MIR SINE MIR -2 260 25 784 299 91 17 chr6 179252932 179253523 -3161719 + L1MC4 LINE L1 7406 8040 -2 2393 103 6 0 chr6 179254360 179254671 -3160571 + AluSq SINE Alu 1 313 0 354 248 0 0 chr6 179254693 179254773 -3160469 + FRAM SINE Alu 66 132 -34 478 203 7 26 chr6 179254790 179254943 -3160299 + GA-rich Low_complexity Low_complexity 1 150 0 723 324 55 52 chr6 179255418 179256397 -3158845 + ERVL LTR ERVL 2493 3479 -2175 224 233 0 0 chr6 179256408 179256451 -3158791 + (CA)n Simple_repeat Simple_repeat 2 44 0 356 307 87 32 chr6 179256451 179256728 -3158514 + ERVL LTR ERVL 3474 3765 -1889 572 299 10 26 chr6 179256753 179256947 -3158295 + ERVL LTR ERVL 4109 4299 -1465 1029 325 85 10 chr6 179257236 179257835 -3157407 + ERVL LTR ERVL 4726 5369 -395 247 169 352 0 chr6 179260978 179261049 -3154193 + MER8 DNA MER2_type 45 140 -99 380 218 0 13 chr6 179261158 179261236 -3154006 - Tigger2 DNA MER2_type -2641 77 1 751 235 97 0 chr6 179261579 179261775 -3153467 + MER20 DNA MER1_type 5 219 0 1469 154 100 12 chr6 179262163 179262457 -3152785 + AluJb SINE Alu 1 317 0 501 308 89 20 chr6 179263124 179263404 -3151838 + L1ME4a LINE L1 5353 5654 -467 558 277 45 0 chr6 179263666 179263821 -3151421 + MER6A DNA MER2_type 1 162 -443 1900 193 47 16 chr6 179263924 179264350 -3150892 + MER6A DNA MER2_type 332 510 -95 4155 113 17 66 chr6 179264350 179265046 -3150196 + MER4A LTR ERV1 3 664 0 256 313 10 10 chr6 179266183 179266282 -3148960 + L2 LINE L2 2222 2320 -994 236 272 96 52 chr6 179266825 179266961 -3148281 + MLT1G LTR MaLR 18 159 -431 1304 64 6 0 chr6 179267657 179267814 -3147428 - AluY SINE Alu -153 158 1 2430 68 0 13 chr6 179269074 179269384 -3145858 - AluSq SINE Alu -7 306 1 383 275 121 12 chr6 179269586 179269826 -3145416 - L2 LINE L2 -515 2799 2534 1343 148 100 0 chr6 179269826 179270056 -3145186 - AluSx SINE Alu -2 310 58 2427 74 3 7 chr6 179270222 179270531 -3144711 + AluSg SINE Alu 1 308 -2 1116 167 0 0 chr6 179270818 179270992 -3144250 + AluJb SINE Alu 134 307 -5 265 259 154 80 chr6 179271067 179271469 -3143773 + L1ME4a LINE L1 5689 6120 -1 205 296 139 19 chr6 179272542 179272650 -3142592 - MIR3 SINE MIR -7 201 81 2012 110 3 37 chr6 179272830 179273129 -3142113 - AluSg SINE Alu -21 289 1 454 200 17 28 chr6 179273753 179273933 -3141309 + (TG)n Simple_repeat Simple_repeat 2 179 0 297 258 13 6 chr6 179273948 179274107 -3141135 + (TG)n Simple_repeat Simple_repeat 2 161 0 26 64 0 0 chr6 179275853 179275900 -3139342 + AT_rich Low_complexity Low_complexity 1 47 0 192 313 139 9 chr6 179275934 179276049 -3139193 + L2 LINE L2 2200 2329 -985 1784 178 3 25 chr6 179277033 179277347 -3137895 + AluJo SINE Alu 1 307 -5 268 269 32 0 chr6 179277755 179277848 -3137394 - L1M4 LINE L1 -3135 3011 2916 709 218 177 72 chr6 179278056 179278446 -3136796 + MLT1J LTR MaLR 75 505 -6 186 265 17 19 chr6 179278661 179278732 -3136510 - MIR SINE MIR -52 156 86 1750 169 51 0 chr6 179279230 179279525 -3135717 + AluJo SINE Alu 1 310 -2 1936 151 0 0 chr6 179279622 179279931 -3135311 + AluSx SINE Alu 1 309 0 1720 171 7 16 chr6 179280085 179280389 -3134853 + AluJb SINE Alu 1 301 -11 1735 178 0 7 chr6 179281885 179282178 -3133064 + AluJb SINE Alu 3 293 -19 615 264 68 27 chr6 179282762 179282982 -3132260 - MIR SINE MIR 0 262 34 259 321 184 20 chr6 179283245 179283538 -3131704 + L3 LINE CR1 1053 1393 -184 300 226 148 26 chr6 179283988 179284143 -3131099 - Charlie2 DNA MER1_type -17 2845 2672 2906 90 0 0 chr6 179284413 179284768 -3130474 + THE1A LTR MaLR 1 355 0 287 237 51 17 chr6 179286655 179286773 -3128469 - L1ME4a LINE L1 -188 5933 5812 931 230 65 8 chr6 179286920 179287168 -3128074 - L1MC4a LINE L1 -1977 5831 5570 22 0 0 0 chr6 179287742 179287764 -3127478 + AT_rich Low_complexity Low_complexity 1 22 0 453 31 15 15 chr6 179287986 179288051 -3127191 + MER41A LTR ERV1 402 466 -88 851 258 70 31 chr6 179288253 179288719 -3126523 + MER34B LTR ERV1 1 523 -42 2153 74 0 0 chr6 179289723 179289980 -3125262 - AluY SINE Alu -54 257 1 1178 312 121 15 chr6 179289998 179290587 -3124655 - L2 LINE L2 -1889 1425 775 1874 193 89 36 chr6 179290601 179291094 -3124148 - Tigger6b DNA MER2_type 0 1597 1079 2928 190 32 15 chr6 179291099 179291700 -3123542 - Tigger6b DNA MER2_type -773 824 214 917 167 0 19 chr6 179291703 179291859 -3123383 + MLT1A2 LTR MaLR 1 153 -221 499 243 113 22 chr6 179291991 179292176 -3123066 + MLT1B LTR MaLR 173 390 0 1021 130 0 152 chr6 179292177 179292408 -3122834 - Tigger6b DNA MER2_type -1400 197 2 679 326 121 15 chr6 179292409 179292798 -3122444 - L2 LINE L2 -2596 718 289 1998 42 0 17 chr6 179292817 179293053 -3122189 + AluY SINE Alu 1 232 -79 213 276 90 90 chr6 179293465 179293599 -3121643 - L2 LINE L2 -478 2836 2703 363 331 40 0 chr6 179293735 179293859 -3121383 + L2 LINE L2 3185 3313 0 27596 127 10 17 chr6 179294520 179300942 -3114300 - L1PA8A LINE L1 -5 6441 8 458 139 30 59 chr6 179300942 179301043 -3114199 - THE1C LTR MaLR -77 298 201 858 174 0 0 chr6 179301418 179301550 -3113692 - FLAM_C SINE Alu 0 133 2 185 143 48 0 chr6 179302126 179302168 -3113074 + (CATA)n Simple_repeat Simple_repeat 3 46 0 182 213 62 38 chr6 179302169 179302249 -3112993 + MER5C DNA MER1_type 106 187 -137 2258 115 7 0 chr6 179303015 179303311 -3111931 - AluSq SINE Alu -15 298 1 1061 258 75 47 chr6 179303327 179303792 -3111450 + MLT1H LTR MaLR 72 549 0 339 303 197 15 chr6 179303793 179304057 -3111185 + L2 LINE L2 2829 3140 -173 474 224 180 44 chr6 179304368 179304551 -3110691 - MIR SINE MIR -14 248 41 1630 112 82 0 chr6 179304815 179305083 -3110159 - AluSq SINE Alu -12 301 12 342 145 18 5 chr6 179305249 179305324 -3109918 - AluS SINE Alu -246 62 14 34 72 0 0 chr6 179305730 179305799 -3109443 + AT_rich Low_complexity Low_complexity 1 69 0 21 36 0 0 chr6 179305996 179306024 -3109218 + AT_rich Low_complexity Low_complexity 1 28 0 325 171 114 0 chr6 179306373 179306443 -3108799 + MLT2C2 LTR ERVL 377 454 -10 24 77 0 0 chr6 179307094 179307146 -3108096 + AT_rich Low_complexity Low_complexity 1 52 0 192 333 0 13 chr6 179307255 179307333 -3107909 - L2 LINE L2 -4 3309 3233 4181 229 60 20 chr6 179307355 179307501 -3107741 - L1MEc LINE L1 -1983 4232 4093 2150 109 6 32 chr6 179307501 179307813 -3107429 - AluY SINE Alu -6 305 2 4181 229 60 20 chr6 179307813 179308885 -3106357 - L1MEc LINE L1 -2122 4093 2965 2149 156 93 30 chr6 179308876 179309337 -3105905 - L1MCa LINE L1 -5348 1078 589 * 397 148 327 0 chr6 179309452 179309553 -3105689 - L1MCa LINE L1 -6236 190 57 2081 275 107 35 chr6 179309568 179311045 -3104197 - L1MEc LINE L1 -4754 1642 36 2097 97 7 7 chr6 179311615 179311914 -3103328 - AluSx SINE Alu -13 299 1 295 331 7 40 chr6 179312803 179312954 -3102288 + MIR SINE MIR 3 148 -114 259 301 55 0 chr6 179313123 179313196 -3102046 + MIR SINE MIR 30 106 -102 633 164 45 0 chr6 179314594 179314728 -3100514 + AluJb SINE Alu 137 276 -36 940 279 165 22 chr6 179314941 179315475 -3099767 + L2 LINE L2 1598 2207 -1107 207 200 100 86 chr6 179315488 179315558 -3099684 + L2 LINE L2 3243 3313 0 436 289 42 14 chr6 179315643 179315785 -3099457 - MIR SINE MIR -112 150 5 2079 141 47 18 chr6 179316241 179316623 -3098619 - MER65A LTR ERV1 0 445 53 6111 215 44 27 chr6 179367571 179368819 -3046423 + Cheshire DNA MER1_type 171 1511 -909 9285 26 0 0 chr6 179368819 179370613 -3044629 + L1PA4 LINE L1 4362 6155 0 6111 215 44 27 chr6 179370613 179371539 -3043703 + Cheshire DNA MER1_type 1511 2420 0 21 0 0 0 chr6 179371897 179371918 -3043324 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 179372241 179372264 -3042978 + AT_rich Low_complexity Low_complexity 1 23 0 864 262 80 22 chr6 179372833 179373278 -3041964 - MLT1G LTR MaLR -1 554 7 186 43 0 0 chr6 179373985 179374008 -3041234 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 179374087 179374108 -3041134 + AT_rich Low_complexity Low_complexity 1 21 0 203 170 21 0 chr6 179374278 179374325 -3040917 + (TA)n Simple_repeat Simple_repeat 2 49 0 30 17 4 0 chr6 179374337 179374400 -3040842 + AT_rich Low_complexity Low_complexity 1 37 0 689 218 111 104 chr6 179374422 179374576 -3040666 + L1ME LINE L1 3731 3882 -2264 180 0 0 0 chr6 179374576 179374596 -3040646 + (TA)n Simple_repeat Simple_repeat 2 21 0 689 218 111 104 chr6 179374596 179374827 -3040415 + L1ME LINE L1 3882 4119 -2027 * 805 242 40 27 chr6 179374822 179375101 -3040141 + L1ME LINE L1 5442 5727 -435 27 73 0 0 chr6 179375530 179375585 -3039657 + AT_rich Low_complexity Low_complexity 1 55 0 322 339 46 10 chr6 179375585 179375780 -3039462 + L1M4 LINE L1 4382 4583 -1563 203 122 0 49 chr6 179375922 179375963 -3039279 + L2 LINE L2 1977 2015 -1299 8336 50 8 1 chr6 179375972 179376931 -3038311 - LTR5 LTR ERVK -3 966 1 219 175 0 0 chr6 179376947 179376987 -3038255 + L2 LINE L2 1977 2016 -1298 1464 268 28 22 chr6 179376987 179377508 -3037734 - L1MEc LINE L1 -3569 2646 2162 204 179 0 0 chr6 179377520 179377559 -3037683 + (TA)n Simple_repeat Simple_repeat 1 39 0 32198 102 17 19 chr6 179377596 179384003 -3031239 - L1PA7 LINE L1 -4 6465 1 757 230 91 38 chr6 179384023 179384310 -3030932 - MER69 DNA AcHobo 0 2526 2225 5706 94 68 50 chr6 179384333 179385479 -3029763 - MER11A LTR ERVK 0 1266 1 878 297 106 3 chr6 179385480 179385773 -3029469 - MER69 DNA AcHobo -800 426 104 358 341 0 42 chr6 179386056 179386223 -3029019 - L2 LINE L2 0 3313 3154 593 272 191 13 chr6 179386468 179387228 -3028014 + L1MEc LINE L1 1914 2766 -3449 34973 33 1 0 chr6 179387237 179392161 -3023081 + L1PA4 LINE L1 1228 6153 -2 576 216 43 58 chr6 179392183 179392391 -3022851 + L1MEc LINE L1 2763 2967 -3248 189 0 0 0 chr6 179392882 179392903 -3022339 + (TG)n Simple_repeat Simple_repeat 2 22 0 347 286 62 0 chr6 179393159 179393271 -3021971 - MIR SINE MIR -80 182 64 270 106 0 0 chr6 179396206 179396253 -3018989 + (GA)n Simple_repeat Simple_repeat 1 47 0 1046 177 42 100 chr6 179396602 179396690 -3018552 + MLT1B LTR MaLR 1 93 -281 3244 175 21 2 chr6 179396690 179397260 -3017982 - L1PA16 LINE L1 0 6166 5586 1046 177 42 100 chr6 179397260 179397546 -3017696 + MLT1B LTR MaLR 93 344 -30 199 344 98 25 chr6 179398647 179398769 -3016473 - L2 LINE L2 -6 3266 3136 198 300 72 22 chr6 179399804 179399984 -3015258 - MER5A DNA MER1_type 0 189 1 225 233 70 0 chr6 179400463 179400549 -3014693 - L1MA7 LINE L1 -218 6073 5982 896 171 12 11 chr6 179400564 179400761 -3014481 + L1MA7 LINE L1 6104 6291 0 581 42 87 25 chr6 179401428 179401839 -3013403 + (CA)n Simple_repeat Simple_repeat 1 436 0 609 44 93 15 chr6 179401880 179402586 -3012656 + (CA)n Simple_repeat Simple_repeat 1 761 0 2225 105 9 12 chr6 179402979 179403304 -3011938 + L1PB1 LINE L1 5826 6149 -2 189 0 0 0 chr6 179403332 179403353 -3011889 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2062 276 35 11 chr6 179403943 179404688 -3010554 - L1ME3 LINE L1 -139 6023 5261 362 243 64 14 chr6 179404703 179404843 -3010399 - L1ME3 LINE L1 -940 5206 5060 1796 218 82 2 chr6 179407588 179407991 -3007251 - MLT2C2 LTR ERVL -1 463 29 27 0 0 0 chr6 179408064 179408091 -3007151 + AT_rich Low_complexity Low_complexity 1 27 0 260 344 100 8 chr6 179408883 179409124 -3006118 + L2 LINE L2 2015 2277 -1037 504 185 0 0 chr6 179409861 179409969 -3005273 + (TG)n Simple_repeat Simple_repeat 2 109 0 1257 109 22 0 chr6 179411062 179411245 -3003997 + L1PA8 LINE L1 5985 6171 -1 285 179 39 64 chr6 179411525 179411603 -3003639 + MER4-int LTR ERV1 1087 1162 -5436 809 126 13 13 chr6 179411604 179411763 -3003479 + (TG)n Simple_repeat Simple_repeat 2 160 0 903 235 132 38 chr6 179411766 179412106 -3003136 - MLT1A2 LTR MaLR -2 372 1 23 54 0 0 chr6 179412226 179412263 -3002979 + AT_rich Low_complexity Low_complexity 1 37 0 223 191 32 32 chr6 179412376 179412439 -3002803 + (TATG)n Simple_repeat Simple_repeat 3 65 0 1666 296 147 47 chr6 179412777 179413180 -3002062 - HAL1 LINE L1 -787 1720 1359 1946 142 71 6 chr6 179413180 179413532 -3001710 + THE1C LTR MaLR 1 375 0 1666 296 147 47 chr6 179413532 179414684 -3000558 - HAL1 LINE L1 -1148 1359 10 330 385 94 4 chr6 179414703 179414937 -3000305 - L1ME3 LINE L1 -1122 5024 4770 325 249 10 17 chr6 179414968 179415282 -2999960 + (CA)n Simple_repeat Simple_repeat 1 311 0 362 261 9 21 chr6 179415298 179415537 -2999705 + (CA)n Simple_repeat Simple_repeat 1 235 0 393 286 46 64 chr6 179416306 179416481 -2998761 + MIR3 SINE MIR 11 187 -21 2727 199 65 12 chr6 179416957 179417616 -2997626 + LTR34 LTR ERV1 2 695 -4 2306 174 32 2 chr6 179419030 179419461 -2995781 + LTR34 LTR ERV1 1 444 -255 2990 168 48 34 chr6 179419465 179420090 -2995152 - LTR27 LTR ERV1 0 636 3 8469 133 11 13 chr6 179420099 179421672 -2993570 - LTR27-int LTR ERV1 -8 6934 2714 2519 117 0 0 chr6 179421668 179422010 -2993232 - LTR27-int LTR ERV1 -4978 2559 2218 * 3902 189 38 29 chr6 179421987 179423505 -2991737 - HUERS-P2 LTR ERV1 -382 4835 283 1702 213 13 124 chr6 179423578 179424133 -2991109 - HUERS-P2 LTR ERV1 -2520 568 76 2712 193 47 26 chr6 179424297 179424918 -2990324 - LTR27 LTR ERV1 0 636 3 938 221 52 16 chr6 179424918 179425167 -2990075 + LTR34 LTR ERV1 442 699 0 5454 157 14 19 chr6 179429025 179429960 -2985282 - Ricksha DNA DNA -496 2750 1821 1321 113 152 55 chr6 179429958 179430215 -2985027 - Ricksha DNA DNA -2957 289 8 * 575 309 146 42 chr6 179430361 179430835 -2984407 - L1M4 LINE L1 -893 5253 4830 964 179 0 12 chr6 179430835 179431003 -2984239 - FRAM SINE Alu 0 166 1 575 309 146 42 chr6 179431003 179431336 -2983906 - L1M4 LINE L1 -1316 4830 4329 227 229 0 33 chr6 179431629 179431690 -2983552 - L1M4 LINE L1 -2197 3949 3891 624 130 81 0 chr6 179431886 179432009 -2983233 - L1MA5 LINE L1 -2 6298 6166 243 256 35 35 chr6 179432256 179432342 -2982900 - L1MEc LINE L1 -6292 104 19 189 107 0 0 chr6 179432835 179432863 -2982379 + (CA)n Simple_repeat Simple_repeat 1 28 0 3346 151 22 6 chr6 179433110 179433654 -2981588 - L1PA16 LINE L1 -9 6157 5605 1992 146 0 0 chr6 179433742 179434037 -2981205 - AluSx SINE Alu -17 295 1 596 243 61 114 chr6 179434613 179435102 -2980140 - MLT1F1 LTR MaLR 0 567 105 1301 239 42 22 chr6 179438288 179438644 -2976598 - L1MB5 LINE L1 0 6174 5812 1595 156 11 3 chr6 179438657 179438939 -2976303 - L1MB3 LINE L1 -5 6178 5895 282 225 65 104 chr6 179439062 179439293 -2975949 + L1M4 LINE L1 2933 3154 -2992 1483 270 127 37 chr6 179439294 179439946 -2975296 - MER50 LTR ERV1 -23 711 1 259 280 30 16 chr6 179440471 179440595 -2974647 + L1MC3 LINE L1 6708 6891 -964 245 185 37 19 chr6 179441392 179441446 -2973796 + L1M2a LINE L1 367 421 -6747 1319 188 19 33 chr6 179443252 179443523 -2971719 + AluJb SINE Alu 13 279 -33 225 271 9 28 chr6 179444356 179444463 -2970779 + L1ME3 LINE L1 792 896 -5500 335 324 90 55 chr6 179444479 179444769 -2970473 + L1ME3 LINE L1 932 1231 -4987 779 292 85 33 chr6 179444820 179445654 -2969588 + L1ME3 LINE L1 1273 2192 -4060 909 291 118 6 chr6 179445681 179446165 -2969077 + L1ME3 LINE L1 2238 2775 -3440 511 255 146 26 chr6 179446166 179446543 -2968699 + L1ME3 LINE L1 2846 3267 -2948 1510 269 62 49 chr6 179446620 179447316 -2967926 + L1ME3 LINE L1 5501 6205 -26 356 332 80 25 chr6 179447334 179447690 -2967552 + L2 LINE L2 2701 3068 -245 220 317 67 0 chr6 179447721 179447825 -2967417 + L2 LINE L2 3202 3312 -1 287 267 117 25 chr6 179447900 179448020 -2967222 + L2 LINE L2 3182 3312 -1 361 197 0 26 chr6 179448798 179448874 -2966368 - AluJ/FRAM SINE Alu -1 301 228 2027 124 13 3 chr6 179449599 179449906 -2965336 - AluSx SINE Alu -2 310 1 500 272 23 29 chr6 179451365 179451538 -2963704 + MER77 LTR ERV1 425 596 -9 489 245 135 50 chr6 179451615 179451939 -2963303 + L2 LINE L2 2686 3032 -281 2552 30 0 0 chr6 179453107 179453403 -2961839 - AluY SINE Alu -15 296 1 691 226 90 0 chr6 179459370 179459525 -2955717 - MER5A DNA MER1_type -12 177 9 333 330 84 21 chr6 179459644 179459883 -2955359 - MLT1J2 LTR MaLR -119 331 78 325 296 26 0 chr6 179460023 179460138 -2955104 - L2 LINE L2 -774 2540 2423 260 294 88 0 chr6 179460136 179460238 -2955004 + L2 LINE L2 3156 3266 -6 * 1460 238 68 8 chr6 179460650 179461020 -2954222 + MER65C LTR ERV1 70 461 0 711 264 50 8 chr6 179461741 179462048 -2953194 + MER34 LTR ERV1 34 380 -162 2097 151 53 34 chr6 179462070 179462427 -2952815 + THE1B LTR MaLR 1 364 0 10993 90 13 65 chr6 179462427 179462781 -2952461 + THE1B-int LTR MaLR 1 372 -1208 7387 61 64 1 chr6 179462781 179464262 -2950980 - L1PA8 LINE L1 -14 6158 4622 10993 90 13 65 chr6 179464262 179465574 -2949668 + THE1B-int LTR MaLR 372 1580 0 2831 228 77 58 chr6 179465596 179467151 -2948091 + LTR49-int LTR ERV1 1507 3526 -2377 468 216 111 61 chr6 179467447 179467579 -2947663 + LTR49-int LTR ERV1 3543 3688 -2910 1478 107 33 92 chr6 179467579 179467851 -2947391 - L1PA16 LINE L1 -1 6165 5910 468 216 111 61 chr6 179467851 179467899 -2947343 + LTR49-int LTR ERV1 3688 3732 -2866 2650 59 0 0 chr6 179467915 179468221 -2947021 - AluY SINE Alu -5 306 1 2194 248 98 59 chr6 179468308 179470458 -2944784 + LTR49-int LTR ERV1 2468 4173 -698 1621 197 16 3 chr6 179471265 179471580 -2943662 + MER65C LTR ERV1 143 461 0 201 162 0 0 chr6 179474346 179474383 -2940859 + T-rich Low_complexity Low_complexity 1 37 0 433 254 9 0 chr6 179474606 179474716 -2940526 + MIR SINE MIR 123 233 -29 428 301 84 0 chr6 179475127 179475270 -2939972 + MIR SINE MIR 108 262 0 668 116 0 0 chr6 179477801 179477887 -2937355 - AluS SINE Alu -225 87 2 246 81 0 0 chr6 179478039 179478076 -2937166 + (TC)n Simple_repeat Simple_repeat 2 38 0 258 32 0 0 chr6 179478077 179478108 -2937134 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 53 0 0 chr6 179479666 179479704 -2935538 + AT_rich Low_complexity Low_complexity 1 38 0 316 222 37 0 chr6 179480022 179480103 -2935139 + L2 LINE L2 3230 3313 0 1907 247 86 24 chr6 179480289 179480619 -2934623 - L1ME2 LINE L1 -125 6039 5731 3353 118 85 25 chr6 179480619 179481185 -2934057 + MER4A LTR ERV1 1 600 0 1907 247 86 24 chr6 179481185 179481694 -2933548 - L1ME2 LINE L1 -433 5731 5158 25 31 0 0 chr6 179485605 179485637 -2929605 + AT_rich Low_complexity Low_complexity 1 32 0 190 293 35 0 chr6 179486298 179486356 -2928886 + MER5A DNA MER1_type 67 126 -63 315 0 0 0 chr6 179487658 179487693 -2927549 + (GGA)n Simple_repeat Simple_repeat 1 35 0 10786 200 57 59 chr6 179487704 179488234 -2927008 + L1MB3 LINE L1 53 582 -5800 1640 158 15 0 chr6 179488234 179488499 -2926743 + AluSx SINE Alu 42 310 -2 10786 200 57 59 chr6 179488499 179490362 -2924880 + L1MB3 LINE L1 582 2447 -3935 1212 257 8 4 chr6 179490362 179490599 -2924643 + MER8 DNA MER2_type 2 239 0 10786 200 57 59 chr6 179490599 179491852 -2923390 + L1MB3 LINE L1 2447 3698 -2684 1982 100 56 0 chr6 179491852 179492121 -2923121 + AluSx SINE Alu 1 284 -28 10786 200 57 59 chr6 179492121 179492663 -2922579 + L1MB3 LINE L1 3698 4239 -2143 614 230 110 172 chr6 179492672 179493090 -2922152 - MSTC LTR MaLR -4 392 1 4762 216 34 62 chr6 179493091 179494523 -2920719 + L1MB3 LINE L1 4241 5632 -750 1069 75 0 15 chr6 179494523 179494657 -2920585 + AluSq/x SINE Alu 1 132 -181 2332 102 3 6 chr6 179494659 179494973 -2920269 + AluSp SINE Alu 1 313 0 3873 179 57 3 chr6 179494973 179495726 -2919516 + L1MB3 LINE L1 5624 6417 -2 2886 102 8 0 chr6 179495946 179496317 -2918925 - THE1C LTR MaLR -1 374 1 901 134 0 0 chr6 179496317 179496444 -2918798 - THE1C LTR MaLR -248 127 1 10398 112 11 35 chr6 179496444 179498004 -2917238 - THE1C-int LTR MaLR 0 1580 57 2157 130 3 18 chr6 179498004 179498329 -2916913 - THE1C LTR MaLR -52 380 1 1303 229 43 32 chr6 179498415 179498787 -2916455 - MLT1B LTR MaLR 0 390 15 2680 238 119 82 chr6 179498801 179500123 -2915119 - MLT1B-int LTR MaLR -1 1370 1 1020 207 66 121 chr6 179500123 179500519 -2914723 - MLT1A2 LTR MaLR 0 374 1 543 105 53 0 chr6 179500814 179500890 -2914352 + MADE1 DNA Mariner 1 80 0 23 0 0 0 chr6 179501099 179501122 -2914120 + AT_rich Low_complexity Low_complexity 1 23 0 1682 192 71 6 chr6 179501426 179501765 -2913477 - MLT1A1 LTR MaLR -4 361 1 668 255 116 5 chr6 179502067 179502283 -2912959 + MIR SINE MIR 13 252 -10 240 176 39 0 chr6 179503259 179503310 -2911932 - MLT1K LTR MaLR -25 563 511 511 331 27 39 chr6 179503762 179504019 -2911223 + L1MEd LINE L1 456 709 -5410 545 312 77 13 chr6 179504162 179504460 -2910782 + L1MEd LINE L1 934 1250 -4869 233 280 0 43 chr6 179504802 179504895 -2910347 - L1M4 LINE L1 -1019 5127 5039 1958 129 7 7 chr6 179504915 179505202 -2910040 - AluSq SINE Alu -26 287 1 449 288 205 38 chr6 179505600 179505729 -2909513 - L1M4 LINE L1 -1534 4612 4506 5002 46 41 3 chr6 179505729 179506315 -2908927 + LTR14B LTR ERVK 1 608 0 449 288 205 38 chr6 179506315 179506999 -2908243 - L1M4 LINE L1 -1640 4506 3663 1809 259 71 38 chr6 179507027 179507112 -2908130 + L1ME1 LINE L1 5508 5589 -577 1724 177 17 7 chr6 179507112 179507411 -2907831 - AluSx SINE Alu -8 304 3 1809 259 71 38 chr6 179507411 179507957 -2907285 + L1ME1 LINE L1 5589 6160 -6 2541 176 53 22 chr6 179508334 179509063 -2906179 + L1P4 LINE L1 4750 5491 -675 764 143 0 8 chr6 179509064 179509197 -2906045 + L1PA13 LINE L1 2350 2481 -3665 1081 71 7 0 chr6 179509389 179509543 -2905699 - L1PA13 LINE L1 -3 6160 6006 4313 144 91 94 chr6 179509543 179511632 -2903610 + pTR5 LTR ERV1 65 2429 -9 2933 122 11 2 chr6 179511632 179511721 -2903521 - L1PA13 LINE L1 -158 6005 5917 1542 220 55 15 chr6 179511721 179512206 -2903036 - L1MB1 LINE L1 -278 5911 5398 13666 181 29 3 chr6 179512206 179513370 -2901872 + L1PA13 LINE L1 2481 3614 -2549 267 54 0 0 chr6 179513370 179513407 -2901835 + (CA)n Simple_repeat Simple_repeat 2 38 0 13666 181 29 3 chr6 179513407 179515830 -2899412 + L1PA13 LINE L1 3614 6144 -19 1542 220 55 15 chr6 179515830 179515848 -2899394 - L1MB1 LINE L1 -791 5398 5382 1109 131 6 0 chr6 179515851 179516027 -2899215 + L1P4 LINE L1 5476 5652 -514 216 0 0 0 chr6 179516162 179516186 -2899056 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 2213 106 0 0 chr6 179516186 179516469 -2898773 - AluSg SINE Alu -27 283 1 714 296 41 14 chr6 179516690 179516910 -2898332 + MIR SINE MIR 8 233 -29 209 325 68 42 chr6 179518714 179518905 -2896337 - MIR3 SINE MIR -12 196 1 379 290 28 0 chr6 179519348 179519455 -2895787 + MER5B DNA MER1_type 61 170 -8 24 53 0 0 chr6 179521154 179521192 -2894050 + AT_rich Low_complexity Low_complexity 1 38 0 450 314 69 77 chr6 179521625 179522135 -2893107 + L1MEd LINE L1 675 1180 -4939 359 322 0 33 chr6 179522135 179522318 -2892924 + HAL1 LINE L1 1492 1668 -839 21 0 0 0 chr6 179522600 179522621 -2892621 + AT_rich Low_complexity Low_complexity 1 21 0 270 298 50 5 chr6 179522834 179523052 -2892190 + L1MEd LINE L1 2244 2471 -3658 272 264 46 75 chr6 179523096 179523270 -2891972 + L2 LINE L2 2270 2438 -876 1576 237 127 77 chr6 179523582 179524309 -2890933 + L1M4 LINE L1 24 794 -5748 432 0 0 0 chr6 179524309 179524357 -2890885 + (CA)n Simple_repeat Simple_repeat 2 49 0 1576 237 127 77 chr6 179524357 179524418 -2890824 + L1M4 LINE L1 794 851 -5691 567 106 0 62 chr6 179524418 179524531 -2890711 + MSTA-int LTR MaLR 1546 1651 0 2085 134 67 19 chr6 179524544 179524918 -2890324 + MSTA LTR MaLR 32 423 -5 324 224 0 0 chr6 179524922 179524980 -2890262 - L1M3f LINE L1 -5269 59 2 1313 247 112 4 chr6 179525029 179525483 -2889759 - L1M4c LINE L1 -4503 1881 1379 * 7302 173 25 2 chr6 179525482 179526821 -2888421 - MSTA-int LTR MaLR -281 1370 1 2141 176 59 12 chr6 179526821 179527230 -2888012 - MSTA LTR MaLR 0 428 1 14902 180 32 16 chr6 179527230 179532775 -2882467 + L1MA4 LINE L1 49 5675 -807 2587 71 0 0 chr6 179532775 179533086 -2882156 + AluY SINE Alu 1 311 0 14902 180 32 16 chr6 179533086 179533723 -2881519 + L1MA4 LINE L1 5675 6300 -182 3607 189 60 19 chr6 179533727 179533851 -2881391 + L1MB7 LINE L1 4993 5110 -1074 2169 112 0 0 chr6 179533851 179534168 -2881074 + AluSx SINE Alu 1 317 0 3607 189 60 19 chr6 179534168 179535165 -2880077 + L1MB7 LINE L1 5110 6168 -16 253 257 125 0 chr6 179535167 179535303 -2879939 + L1MC5 LINE L1 7707 7859 -102 2077 142 0 0 chr6 179536060 179536348 -2878894 - AluSx SINE Alu -24 288 1 526 281 47 19 chr6 179536414 179536670 -2878572 + L1ME LINE L1 5551 5813 -308 244 217 420 7 chr6 179538521 179538659 -2876583 + L2 LINE L2 3119 3313 0 966 236 185 44 chr6 179538866 179539173 -2876069 + Zaphod DNA AcHobo 242 504 -3527 1837 111 20 0 chr6 179539173 179539425 -2875817 - AluSg SINE Alu -10 300 44 966 236 185 44 chr6 179539425 179540058 -2875184 + Zaphod DNA AcHobo 504 1315 -2716 367 269 40 13 chr6 179540074 179540223 -2875019 + Zaphod DNA AcHobo 3750 3902 -129 22 0 0 0 chr6 179540340 179540362 -2874880 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 179540480 179540500 -2874742 + (CAAAAA)n Simple_repeat Simple_repeat 1 20 0 252 246 0 0 chr6 179541345 179541414 -2873828 + (TG)n Simple_repeat Simple_repeat 2 70 0 2575 241 32 24 chr6 179541418 179542323 -2872919 - L1M4 LINE L1 -1995 4151 3240 235 336 91 18 chr6 179542568 179542678 -2872564 + MIR3 SINE MIR 2 119 -89 207 292 28 28 chr6 179544125 179544197 -2871045 - L2 LINE L2 -2 3311 3240 609 305 105 55 chr6 179544724 179545395 -2869847 - L2 LINE L2 -79 3234 2526 274 254 25 91 chr6 179545452 179545649 -2869593 + L1MC5 LINE L1 7698 7881 -80 290 355 138 0 chr6 179545724 179545927 -2869315 - L3 LINE CR1 -15 1562 1332 327 25 0 0 chr6 179546225 179546265 -2868977 + (CA)n Simple_repeat Simple_repeat 2 41 0 2265 97 0 7 chr6 179547953 179548251 -2866991 - AluSg SINE Alu -14 296 1 426 316 134 18 chr6 179548274 179548549 -2866693 - HAL1 LINE L1 -600 1907 1601 1515 246 110 16 chr6 179549670 179550315 -2864927 + L1MC4 LINE L1 7211 7916 -126 442 213 61 15 chr6 179550316 179550570 -2864672 - MER33 DNA MER1_type -8 355 31 1444 178 77 12 chr6 179550878 179551499 -2863743 - Charlie1 DNA MER1_type 0 2761 2045 733 236 57 28 chr6 179551503 179551938 -2863304 + L1MC/D LINE L1 3860 4281 -1865 1976 141 14 0 chr6 179551938 179552256 -2862986 - AluSx SINE Alu 0 312 1 733 236 57 28 chr6 179552256 179552935 -2862307 + L1MC/D LINE L1 4281 5159 -987 1711 148 68 4 chr6 179552935 179553213 -2862029 + AluJb SINE Alu 1 296 -16 733 236 57 28 chr6 179553213 179553331 -2861911 + L1MC/D LINE L1 5159 5272 -874 1282 210 25 73 chr6 179553392 179553873 -2861369 + L1MC/D LINE L1 5268 5725 -634 4538 228 34 33 chr6 179554463 179555900 -2859342 + L1MC1 LINE L1 3253 4690 -1456 949 123 6 0 chr6 179555880 179556043 -2859199 + L1MA5 LINE L1 6093 6256 -44 * 4773 181 47 23 chr6 179556103 179557720 -2857522 + L1MC1 LINE L1 4672 6330 -3 204 0 0 36 chr6 179557930 179557958 -2857284 + (TTTA)n Simple_repeat Simple_repeat 2 172 0 2045 137 0 3 chr6 179557958 179558242 -2857000 - AluSx SINE Alu -29 283 1 2022 141 0 0 chr6 179558245 179558535 -2856707 - AluJo SINE Alu -20 292 3 384 246 55 0 chr6 179558884 179558994 -2856248 + L2 LINE L2 2592 2707 -607 2236 92 0 7 chr6 179559004 179559288 -2855954 + AluSq SINE Alu 31 312 -1 477 224 61 41 chr6 179559315 179559462 -2855780 - MER58A DNA MER1_type -29 195 46 256 241 60 24 chr6 179560053 179560136 -2855106 - MIR SINE MIR -121 141 56 568 136 16 0 chr6 179560495 179560620 -2854622 + (TG)n Simple_repeat Simple_repeat 1 127 0 284 358 58 5 chr6 179561375 179561565 -2853677 + MIR3 SINE MIR 3 202 -6 247 309 0 0 chr6 179563376 179563457 -2851785 + L1ME2 LINE L1 4871 4951 -1195 1263 243 37 29 chr6 179563618 179564001 -2851241 + MLT1E LTR MaLR 193 578 -15 1626 243 83 40 chr6 179564002 179564939 -2850303 + L1ME2 LINE L1 4997 6035 -129 453 209 73 0 chr6 179565172 179565282 -2849960 + FLAM_A SINE Alu 1 118 -24 21 57 0 0 chr6 179565852 179565887 -2849355 + AT_rich Low_complexity Low_complexity 1 35 0 236 276 97 35 chr6 179566130 179566275 -2848967 + MER5A DNA MER1_type 14 167 -22 500 332 84 5 chr6 179567336 179567550 -2847692 + MIR SINE MIR 20 250 -12 2471 102 11 8 chr6 179567574 179567928 -2847314 + THE1A LTR MaLR 1 355 0 25 51 0 0 chr6 179568222 179568261 -2846981 + AT_rich Low_complexity Low_complexity 1 39 0 1969 259 73 13 chr6 179568454 179568566 -2846676 + L1MEc LINE L1 1797 1901 -4314 1606 204 36 17 chr6 179568566 179568923 -2846319 - MLT1A1 LTR MaLR -1 364 1 1969 259 73 13 chr6 179568923 179570036 -2845206 + L1MEc LINE L1 1901 3080 -3135 2075 157 36 39 chr6 179571429 179571986 -2843256 - MLT2A2 LTR ERVL 0 554 2 1415 143 127 4 chr6 179573208 179573460 -2841782 - AluJb SINE Alu -24 288 6 2400 94 0 0 chr6 179578068 179578367 -2836875 + AluSq SINE Alu 1 299 -14 29 0 0 0 chr6 179578773 179578802 -2836440 + AT_rich Low_complexity Low_complexity 1 29 0 1602 171 0 32 chr6 179579067 179579377 -2835865 + AluJb SINE Alu 1 300 -12 388 202 53 0 chr6 179579431 179579525 -2835717 + L1MCc LINE L1 1373 1471 -4952 2493 68 0 19 chr6 179579780 179580091 -2835151 + AluSc SINE Alu 1 305 -4 325 246 93 66 chr6 179580255 179580438 -2834804 + L1ME LINE L1 5564 5751 -370 1069 176 111 5 chr6 179580903 179581119 -2834123 - MER8 DNA MER2_type 0 239 1 1066 186 100 71 chr6 179582425 179582716 -2832526 + MLT2B1 LTR ERVL 155 457 -63 267 31 0 0 chr6 179582716 179582748 -2832494 + (TCCA)n Simple_repeat Simple_repeat 3 34 0 1066 186 100 71 chr6 179582748 179582767 -2832475 + MLT2B1 LTR ERVL 457 474 -46 579 141 40 0 chr6 179582770 179582919 -2832323 + CT-rich Low_complexity Low_complexity 2 156 0 272 27 27 0 chr6 179582920 179582957 -2832285 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 1873 151 13 31 chr6 179583998 179584316 -2830926 + AluJo SINE Alu 1 312 0 734 169 69 69 chr6 179585323 179585529 -2829713 + MLT2B1 LTR ERVL 240 366 -48 21 0 0 0 chr6 179585982 179586003 -2829239 + AT_rich Low_complexity Low_complexity 1 21 0 1235 222 115 23 chr6 179586988 179587451 -2827791 + MER41B LTR ERV1 141 486 0 809 225 17 0 chr6 179587892 179588065 -2827177 - L1M4 LINE L1 -6350 192 17 303 28 0 0 chr6 179588455 179588491 -2826751 + (TA)n Simple_repeat Simple_repeat 1 36 0 2250 103 3 3 chr6 179589494 179589796 -2825446 - AluSq SINE Alu -11 302 1 264 59 0 0 chr6 179591001 179591035 -2824207 + (TA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr6 179591034 179591063 -2824179 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 3493 206 33 37 chr6 179591291 179592389 -2822853 - L1MA9 LINE L1 -25 6287 5193 2021 222 53 0 chr6 179592390 179592858 -2822384 + L1MA9 LINE L1 4696 5188 -958 15034 133 86 4 chr6 179592973 179594098 -2821144 - Tigger2 DNA MER2_type 0 2718 1686 2362 84 27 0 chr6 179594098 179594396 -2820846 + AluSc SINE Alu 1 306 -3 15034 133 86 4 chr6 179594396 179594731 -2820511 - Tigger2 DNA MER2_type -1032 1686 1380 2377 110 0 0 chr6 179594731 179595040 -2820202 - AluSx SINE Alu -3 309 1 15034 133 86 4 chr6 179595040 179596091 -2819151 - Tigger2 DNA MER2_type -1338 1380 1 449 176 19 9 chr6 179596179 179596287 -2818955 - MER5A DNA MER1_type -80 109 1 376 322 58 0 chr6 179596774 179596948 -2818294 - MIR SINE MIR 0 262 79 2153 193 50 17 chr6 179598343 179598819 -2816423 - L1M3 LINE L1 -350 5818 5327 529 245 68 39 chr6 179598829 179599108 -2816134 - L1MC4 LINE L1 -737 7224 6963 803 264 62 12 chr6 179599332 179599574 -2815668 - L1MC4 LINE L1 -1088 6954 6701 334 314 101 52 chr6 179599742 179601087 -2814155 - L1M3 LINE L1 -1522 4624 3113 2178 103 0 3 chr6 179601087 179601408 -2813834 + AluSx SINE Alu 1 320 0 334 314 101 52 chr6 179601408 179602395 -2812847 - L1M3 LINE L1 -3033 3113 2176 1377 195 57 3 chr6 179602415 179602697 -2812545 + AluJo SINE Alu 1 297 -15 263 326 98 35 chr6 179603179 179603856 -2811386 - HAL1b LINE L1 -569 779 61 21 36 0 0 chr6 179604127 179604155 -2811087 + AT_rich Low_complexity Low_complexity 1 28 0 488 277 52 30 chr6 179604369 179604636 -2810606 - L1M4b LINE L1 -3555 3386 3114 338 245 128 39 chr6 179604723 179604927 -2810315 - L1M4b LINE L1 -4906 1517 1296 375 23 0 0 chr6 179605396 179605440 -2809802 + (CA)n Simple_repeat Simple_repeat 1 44 0 877 275 28 36 chr6 179605657 179605762 -2809480 + MLT1C LTR MaLR 64 168 -299 1265 220 118 6 chr6 179605762 179606117 -2809125 - MSTD LTR MaLR 0 396 2 877 275 28 36 chr6 179606117 179606369 -2808873 + MLT1C LTR MaLR 168 418 -49 959 107 7 0 chr6 179606369 179606509 -2808733 - MER75 DNA T2_type 0 514 374 1870 19 0 0 chr6 179606509 179606723 -2808519 - L1PA4 LINE L1 0 6155 5942 233 287 17 17 chr6 179606723 179606838 -2808404 + L1M4 LINE L1 5023 5137 -1009 6796 29 0 1 chr6 179606912 179607737 -2807505 - L1P LINE L1 -2625 3521 2698 * 8635 53 2 0 chr6 179607729 179608806 -2806436 + L1P LINE L1 881 1959 -4187 2448 150 13 0 chr6 179608806 179609185 -2806057 - MER75 DNA T2_type -130 384 1 315 118 59 0 chr6 179609185 179609236 -2806006 + MLT1C LTR MaLR 414 467 0 278 246 0 0 chr6 179609461 179609518 -2805724 + L2 LINE L2 3251 3307 -6 23 33 0 0 chr6 179610159 179610189 -2805053 + AT_rich Low_complexity Low_complexity 1 30 0 2340 105 0 13 chr6 179610349 179610663 -2804579 - AluSx SINE Alu -2 310 1 482 119 0 0 chr6 179610670 179610737 -2804505 - Alu SINE Alu -11 301 235 264 327 82 10 chr6 179610933 179611141 -2804101 - L1ME4a LINE L1 -49 6072 5850 266 273 67 38 chr6 179611194 179611389 -2803853 + MIR SINE MIR 13 251 -11 11653 179 15 11 chr6 179611402 179613831 -2801411 + L1PB4 LINE L1 2906 5325 -831 4959 87 13 2 chr6 179613831 179614467 -2800775 - L1PA10 LINE L1 -3 6165 5523 11653 179 15 11 chr6 179614467 179614915 -2800327 + L1PB4 LINE L1 5325 5796 -360 279 0 0 0 chr6 179614915 179614946 -2800296 + (CA)n Simple_repeat Simple_repeat 2 32 0 11653 179 15 11 chr6 179614946 179615308 -2799934 + L1PB4 LINE L1 5796 6155 -1 4394 126 91 57 chr6 179615387 179615672 -2799570 - Tigger3b DNA MER2_type -1797 1232 958 3837 130 12 22 chr6 179615672 179615864 -2799378 + L1PB3 LINE L1 5565 5757 -397 2224 143 22 22 chr6 179615864 179616228 -2799014 - THE1B LTR MaLR 0 364 1 12522 88 8 2 chr6 179616228 179617799 -2797443 - THE1B-int LTR MaLR 0 1580 1 2209 123 5 59 chr6 179617799 179618174 -2797068 - THE1A LTR MaLR 0 355 1 3837 130 12 22 chr6 179618174 179618573 -2796669 + L1PB3 LINE L1 5754 6152 -2 4394 126 91 57 chr6 179618573 179618816 -2796426 - Tigger3b DNA MER2_type -2071 958 725 2023 116 0 0 chr6 179618816 179619091 -2796151 - AluSx SINE Alu -1 311 37 4394 126 91 57 chr6 179619091 179619374 -2795868 - Tigger3b DNA MER2_type -2304 725 392 2168 117 0 3 chr6 179619374 179619664 -2795578 + AluSx SINE Alu 1 289 -23 2096 61 43 32 chr6 179619671 179619981 -2795261 + AluY SINE Alu 1 313 0 993 134 0 82 chr6 179619981 179620175 -2795067 + AluSg/x SINE Alu 131 308 -4 773 105 65 0 chr6 179620176 179620300 -2794942 - Tigger3b DNA MER2_type -832 399 268 369 303 10 0 chr6 179620295 179620394 -2794848 - Tigger3b DNA MER2_type -1131 100 1 * 2273 109 3 10 chr6 179621925 179622237 -2793005 + AluSx SINE Alu 1 310 -2 329 254 54 102 chr6 179622520 179622725 -2792517 + L1MDa LINE L1 2404 2598 -3942 1434 143 5 0 chr6 179622749 179622973 -2792269 - L1PA14 LINE L1 -6 6155 5931 2546 179 10 2 chr6 179622992 179623483 -2791759 + L1P LINE L1 4827 5321 -825 369 315 51 53 chr6 179623615 179623730 -2791512 + L1MDa LINE L1 2797 2911 -3629 2251 77 7 3 chr6 179623730 179624037 -2791205 + AluSc SINE Alu 1 308 0 369 315 51 53 chr6 179624037 179624506 -2790736 + L1MDa LINE L1 2911 3382 -3158 3394 151 14 79 chr6 179624589 179624906 -2790336 - LTR9 LTR ERV1 0 612 359 2132 120 0 0 chr6 179624906 179625197 -2790045 - AluSq SINE Alu -22 291 1 3394 151 14 79 chr6 179625197 179625534 -2789708 - LTR9 LTR ERV1 -253 359 1 198 0 0 0 chr6 179626149 179626171 -2789071 + (A)n Simple_repeat Simple_repeat 1 22 0 4585 124 24 38 chr6 179626894 179627636 -2787606 - MER4E LTR ERV1 0 779 48 4347 104 24 2 chr6 179627726 179628313 -2786929 + MER4A LTR ERV1 1 600 0 196 279 117 27 chr6 179628525 179628636 -2786606 + L2 LINE L2 3193 3313 0 519 268 0 0 chr6 179628687 179628866 -2786376 + (CA)n Simple_repeat Simple_repeat 2 180 0 546 270 0 0 chr6 179628901 179629079 -2786163 + (CA)n Simple_repeat Simple_repeat 2 179 0 205 216 0 0 chr6 179629085 179629122 -2786120 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 456 291 0 0 chr6 179629124 179629443 -2785799 + (CA)n Simple_repeat Simple_repeat 1 319 0 637 120 0 20 chr6 179629443 179629543 -2785699 + MER4A LTR ERV1 1 98 -566 1618 156 159 73 chr6 179629543 179629915 -2785327 + MER4A LTR ERV1 261 664 0 4231 130 12 68 chr6 179630278 179631009 -2784233 + LTR8 LTR ERV1 1 690 -1 388 154 15 0 chr6 179631229 179631294 -2783948 - L1MA6 LINE L1 0 6300 6235 1758 213 31 3 chr6 179635535 179635888 -2779354 + MLT1A1 LTR MaLR 2 364 -1 2423 84 0 0 chr6 179637166 179637477 -2777765 + AluSq SINE Alu 1 311 -2 2242 92 0 0 chr6 179638135 179638418 -2776824 + AluSg SINE Alu 1 283 -27 2368 84 0 16 chr6 179639426 179639734 -2775508 + AluSg SINE Alu 1 303 -7 320 291 108 39 chr6 179640768 179640971 -2774271 - L2 LINE L2 -854 2460 2244 185 309 0 0 chr6 179641832 179641887 -2773355 + L2 LINE L2 3200 3254 -18 955 243 18 88 chr6 179643059 179643401 -2771841 + MLT2B1 LTR ERVL 1 318 -202 1215 197 0 0 chr6 179643402 179643600 -2771642 - Tigger3(Golem) DNA MER2_type -2831 198 1 307 179 34 8 chr6 179644098 179644215 -2771027 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 9021 224 38 36 chr6 179644250 179647476 -2767766 + L1MB3 LINE L1 2965 6182 -1 406 208 173 17 chr6 179647461 179647634 -2767608 + L1MD2 LINE L1 4971 5170 -976 * 1202 235 76 50 chr6 179647640 179648036 -2767206 + L1MD2 LINE L1 5805 6210 -149 1025 281 79 10 chr6 179648972 179649388 -2765854 + ERVL LTR ERVL 2139 2583 -3181 971 188 40 43 chr6 179651409 179651685 -2763557 - MLT1D LTR MaLR -8 497 223 2205 94 118 12 chr6 179653274 179653603 -2761639 + THE1B LTR MaLR 1 364 0 1628 135 75 39 chr6 179653620 179653901 -2761341 - AluJo SINE Alu -21 291 1 346 348 58 0 chr6 179654411 179654566 -2760676 - MIR SINE MIR -59 203 40 229 264 300 7 chr6 179654580 179654720 -2760522 + MER5A DNA MER1_type 9 189 0 786 199 50 6 chr6 179654753 179654934 -2760308 - MER5A DNA MER1_type 0 189 1 385 281 21 0 chr6 179656635 179656731 -2758511 + MER58 DNA MER1_type 7 104 -2316 254 333 11 0 chr6 179857238 179857325 -2557917 + (CA)n Simple_repeat Simple_repeat 1 88 0 572 203 68 30 chr6 179857449 179857582 -2557660 + MIR SINE MIR 73 210 -52 1939 213 93 8 chr6 179857643 179858137 -2557105 + MER21B LTR ERV1 190 725 -138 1070 253 92 6 chr6 179858450 179858810 -2556432 + L1MB3 LINE L1 5790 6180 -3 214 381 0 0 chr6 179863709 179863882 -2551360 + C-rich Low_complexity Low_complexity 4 176 0 495 330 31 27 chr6 179865145 179865224 -2550018 - MIR SINE MIR 0 262 185 2190 124 0 0 chr6 179865224 179865514 -2549728 + AluY SINE Alu 1 290 -21 495 330 31 27 chr6 179865514 179865695 -2549547 - MIR SINE MIR -77 185 1 422 370 26 37 chr6 179865987 179866260 -2548982 - L3 LINE CR1 -167 1410 1141 212 263 232 0 chr6 179866505 179866600 -2548642 + MIR SINE MIR 21 137 -125 2593 100 0 16 chr6 179866626 179866996 -2548246 - THE1B LTR MaLR 0 364 1 221 267 17 0 chr6 179867002 179867062 -2548180 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 205 288 15 0 chr6 179867068 179867134 -2548108 + MIR SINE MIR 196 262 0 219 288 152 0 chr6 179867239 179867371 -2547871 - L3 LINE CR1 -773 804 653 334 172 123 153 chr6 179867591 179867754 -2547488 - MER5B DNA MER1_type 0 178 21 1811 154 0 39 chr6 179868386 179868692 -2546550 + AluJo SINE Alu 6 299 -13 264 177 32 0 chr6 179869298 179869360 -2545882 + (TG)n Simple_repeat Simple_repeat 2 65 0 313 368 118 23 chr6 179870434 179871000 -2544242 + L2 LINE L2 2042 2661 -653 243 245 129 49 chr6 179871322 179871485 -2543757 + MLT1K LTR MaLR 401 576 -12 298 298 63 51 chr6 179871494 179871749 -2543493 + L2 LINE L2 2700 2957 -357 275 312 97 43 chr6 179871849 179872035 -2543207 + L2 LINE L2 3118 3313 0 919 171 6 6 chr6 179872035 179872589 -2542653 + (TGGA)n Simple_repeat Simple_repeat 1 554 0 842 172 7 0 chr6 179872606 179872896 -2542346 + (TGGA)n Simple_repeat Simple_repeat 1 291 0 189 0 0 0 chr6 179874024 179874045 -2541197 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr6 179874138 179874160 -2541082 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 389 266 148 52 chr6 179874286 179874364 -2540878 + MLT1J LTR MaLR 34 103 -408 2251 142 83 0 chr6 179874364 179874759 -2540483 + MSTA LTR MaLR 1 428 0 389 266 148 52 chr6 179874759 179874785 -2540457 + MLT1J LTR MaLR 103 125 -386 981 213 22 99 chr6 179874785 179875189 -2540053 + MLT1A2 LTR MaLR 2 374 0 389 266 148 52 chr6 179875189 179875231 -2540011 + MLT1J LTR MaLR 125 162 -349 2830 203 68 32 chr6 179875231 179875676 -2539566 + MER44D DNA MER2_type 1 354 -2133 2804 23 3 0 chr6 179875676 179875986 -2539256 - AluY SINE Alu 0 311 1 2830 203 68 32 chr6 179875986 179876248 -2538994 + MER44D DNA MER2_type 354 605 0 389 266 148 52 chr6 179876248 179876404 -2538838 + MLT1J LTR MaLR 162 367 -144 204 97 0 0 chr6 179876457 179876488 -2538754 + (TG)n Simple_repeat Simple_repeat 1 31 0 2128 88 16 31 chr6 179878767 179879085 -2536157 + AluSq SINE Alu 1 313 0 251 214 14 43 chr6 179879260 179879330 -2535912 - MLT1J2 LTR MaLR -303 147 80 334 311 223 0 chr6 179879936 179880142 -2535100 + MIR SINE MIR 11 262 0 529 139 33 39 chr6 179881061 179881241 -2534001 + (TG)n Simple_repeat Simple_repeat 1 179 0 1325 160 93 42 chr6 179883445 179883801 -2531441 + MLT1A2 LTR MaLR 1 374 0 723 176 0 46 chr6 179885010 179885225 -2530017 - AluJb SINE Alu -10 302 2 2207 115 133 13 chr6 179886693 179887075 -2528167 - MSTA LTR MaLR 0 428 1 326 274 0 6 chr6 179888502 179888677 -2526565 + (TG)n Simple_repeat Simple_repeat 1 174 0 249 309 0 0 chr6 179888708 179888883 -2526359 + (TG)n Simple_repeat Simple_repeat 1 175 0 401 340 0 13 chr6 179888884 179889034 -2526208 + (TATATG)n Simple_repeat Simple_repeat 6 153 0 216 277 0 0 chr6 179889036 179889119 -2526123 + (TG)n Simple_repeat Simple_repeat 2 84 0 417 258 0 0 chr6 179889179 179889342 -2525900 + (TG)n Simple_repeat Simple_repeat 1 163 0 2457 87 0 3 chr6 179890869 179891179 -2524063 + AluSc SINE Alu 1 309 0 624 121 0 10 chr6 179892381 179892480 -2522762 + MER4A LTR ERV1 1 98 -566 2150 121 3 3 chr6 179892495 179892792 -2522450 + AluSx SINE Alu 1 297 -15 1662 124 162 76 chr6 179892804 179893174 -2522068 + MER4A LTR ERV1 261 662 -2 214 200 0 50 chr6 179894272 179894352 -2520890 + GA-rich Low_complexity Low_complexity 3 78 0 446 293 101 49 chr6 179894432 179894719 -2520523 + HAL1b LINE L1 360 661 -687 579 96 0 0 chr6 179894729 179894812 -2520430 + (TC)n Simple_repeat Simple_repeat 2 84 0 1723 158 3 25 chr6 179894830 179895114 -2520128 + AluJo SINE Alu 1 278 -34 2050 119 11 3 chr6 179895145 179895431 -2519811 + AluSg SINE Alu 1 288 -22 870 43 17 0 chr6 179895738 179895853 -2519389 + LTR12 LTR ERV1 169 285 -429 300 244 11 0 chr6 179895853 179895943 -2519299 + LTR30 LTR ERV1 552 642 -80 740 108 0 0 chr6 179895944 179896046 -2519196 + LTR12 LTR ERV1 480 581 -133 326 219 0 0 chr6 179896131 179896204 -2519038 + MLT1J1 LTR MaLR 249 321 -125 464 273 118 31 chr6 179896630 179896919 -2518323 + L1MEd LINE L1 914 1227 -4892 2125 135 6 3 chr6 179897032 179897344 -2517898 + AluSq SINE Alu 1 313 0 206 255 0 0 chr6 179897621 179897672 -2517570 + (TAA)n Simple_repeat Simple_repeat 2 52 0 198 0 0 0 chr6 179897949 179897971 -2517271 + (A)n Simple_repeat Simple_repeat 1 22 0 784 290 60 0 chr6 179898566 179898866 -2516376 + L1ME4a LINE L1 5614 5931 -190 237 178 0 0 chr6 179899247 179899292 -2515950 + T-rich Low_complexity Low_complexity 1 45 0 373 379 50 0 chr6 179900117 179900315 -2514927 - MIR SINE MIR -46 216 9 229 233 92 97 chr6 179901786 179901992 -2513250 + MLT1K LTR MaLR 368 572 -16 241 268 36 0 chr6 179902371 179902483 -2512759 - MER113 DNA MER1_type? -399 122 7 1228 97 0 0 chr6 179903065 179903220 -2512022 + AluSg/x SINE Alu 127 281 -31 498 83 0 0 chr6 179903220 179903292 -2511950 + (GA)n Simple_repeat Simple_repeat 1 72 0 252 298 18 0 chr6 179903764 179903878 -2511364 + MER113 DNA MER1_type? 7 122 -399 247 266 16 0 chr6 179903995 179904059 -2511183 + MER113 DNA MER1_type? 456 520 -1 2232 105 29 10 chr6 179904139 179904445 -2510797 + AluSx SINE Alu 1 312 0 5926 170 70 1 chr6 179904574 179905723 -2509519 - Tigger3b DNA MER2_type -1 1230 2 198 248 99 0 chr6 179906050 179906151 -2509091 + L2 LINE L2 2826 2936 -377 190 239 28 28 chr6 179907157 179907228 -2508014 + L2 LINE L2 2996 3066 -247 317 220 8 91 chr6 179908186 179908318 -2506924 + L1ME4a LINE L1 5615 5735 -386 313 201 39 136 chr6 179908431 179908585 -2506657 + L1ME4a LINE L1 5930 6068 -53 267 218 77 0 chr6 179908939 179909017 -2506225 - MLT1H LTR MaLR -390 159 76 519 242 99 48 chr6 179911290 179911563 -2503679 - MER39 LTR ERV1 -1 706 420 258 316 181 24 chr6 179914212 179914544 -2500698 - L2 LINE L2 -52 3261 2878 351 229 156 24 chr6 179914553 179914758 -2500484 - L2 LINE L2 -635 2679 2448 204 322 105 13 chr6 179915047 179915286 -2499956 - L2 LINE L2 -1039 2275 2015 1808 229 34 0 chr6 179915329 179915771 -2499471 - MER70B LTR ERVL -102 476 20 231 267 0 0 chr6 179916757 179916817 -2498425 + GA-rich Low_complexity Low_complexity 3 62 0 248 123 18 53 chr6 179917266 179917323 -2497919 - MER116 DNA Mariner -25 55 1 287 346 56 41 chr6 179917332 179917598 -2497644 + HAL1b LINE L1 130 399 -949 2084 197 34 7 chr6 179917687 179918103 -2497139 - Tigger2a DNA MER2_type -5 429 3 799 249 83 63 chr6 179918127 179918670 -2496572 + HAL1b LINE L1 552 1105 -243 3560 141 7 0 chr6 179918777 179919367 -2495875 + L1PA13 LINE L1 5569 6162 -1 190 351 0 0 chr6 179919975 179920032 -2495210 - L2 LINE L2 -31 3241 3185 693 238 14 100 chr6 179920395 179920676 -2494566 + MLT1J LTR MaLR 252 508 -3 21 36 0 0 chr6 179920804 179920832 -2494410 + AT_rich Low_complexity Low_complexity 1 28 0 2067 115 24 48 chr6 179920939 179921312 -2493930 + THE1B LTR MaLR 1 364 0 439 289 26 13 chr6 179921413 179921565 -2493677 - MIR SINE MIR -71 191 38 2648 75 13 8 chr6 179921810 179922185 -2493057 + L1PA8 LINE L1 5793 6169 -3 326 188 0 41 chr6 179923576 179923736 -2491506 - MER53 DNA DNA -1 188 2 324 318 33 40 chr6 179924251 179924402 -2490840 + MIR SINE MIR 10 159 -103 1175 262 35 86 chr6 179925902 179926099 -2489143 + L1M4 LINE L1 3465 3670 -2476 2055 109 32 7 chr6 179926099 179926382 -2488860 - AluSq SINE Alu -23 290 1 1175 262 35 86 chr6 179926382 179927039 -2488203 + L1M4 LINE L1 3670 4271 -1875 354 127 13 69 chr6 179927200 179927287 -2487955 - MLT1F LTR MaLR 0 595 461 341 345 161 4 chr6 179927600 179927861 -2487381 - L1M4 LINE L1 -968 5178 4877 184 333 53 13 chr6 179928165 179928240 -2487002 - MIR SINE MIR -103 159 82 5112 215 44 13 chr6 179929860 179930693 -2484549 + L1MC1 LINE L1 3965 4771 -1562 207 0 0 0 chr6 179930693 179930716 -2484526 + (TA)n Simple_repeat Simple_repeat 2 24 0 5112 215 44 13 chr6 179930716 179931770 -2483472 + L1MC1 LINE L1 4771 5909 -424 2935 162 16 6 chr6 179931770 179932310 -2482932 + L1MC1 LINE L1 5771 6324 -9 2284 116 0 0 chr6 179932311 179932605 -2482637 + AluSx SINE Alu 1 294 -18 237 267 129 10 chr6 179932968 179933069 -2482173 + MLT1K LTR MaLR 340 452 -136 2145 230 59 37 chr6 179933084 179933166 -2482076 + MER50 LTR ERV1 21 100 -634 2445 78 0 0 chr6 179933166 179933473 -2481769 + AluY SINE Alu 1 307 -4 2145 230 59 37 chr6 179933473 179934089 -2481153 + MER50 LTR ERV1 100 734 0 300 246 0 0 chr6 179936790 179936855 -2478387 - MIR SINE MIR -114 148 84 1128 304 107 16 chr6 179941188 179941758 -2473484 - L1ME2 LINE L1 0 6164 5543 3805 242 53 42 chr6 179941764 179943196 -2472046 - L1ME2 LINE L1 -696 5474 4008 821 142 0 0 chr6 179943196 179943323 -2471919 - FLAM_A SINE Alu -6 127 1 3805 242 53 42 chr6 179943323 179943469 -2471773 - L1ME2 LINE L1 -2162 4008 3865 389 258 17 25 chr6 179943775 179943895 -2471347 + L2 LINE L2 3195 3313 0 3937 197 85 10 chr6 179944495 179945390 -2469852 + ERVL-C1 LTR ERVL 4795 5756 -8 745 295 92 16 chr6 179945390 179945759 -2469483 + MLT2C1 LTR ERVL 1 397 0 238 263 152 30 chr6 179946815 179946914 -2468328 - MIR SINE MIR -121 141 31 654 204 6 17 chr6 179949237 179949418 -2465824 + GA-rich Low_complexity Low_complexity 1 179 0 188 214 18 0 chr6 179949481 179949537 -2465705 + (TG)n Simple_repeat Simple_repeat 1 57 0 438 53 0 0 chr6 179951436 179951493 -2463749 + (TA)n Simple_repeat Simple_repeat 1 57 0 2200 118 3 0 chr6 179951493 179951782 -2463460 - AluSx SINE Alu -22 290 1 187 294 129 12 chr6 179951841 179951926 -2463316 + MIR SINE MIR 88 182 -80 1580 145 69 26 chr6 179952099 179952571 -2462671 + MER4B LTR ERV1 3 766 0 570 191 15 52 chr6 179953812 179953912 -2461330 + FLAM_A SINE Alu 1 103 -208 2389 130 3 0 chr6 179953912 179954266 -2460976 - THE1A LTR MaLR 0 355 1 11599 85 2 4 chr6 179954266 179955850 -2459392 - THE1A-int LTR MaLR 0 1580 1 2515 78 29 0 chr6 179955850 179956195 -2459047 - THE1A LTR MaLR 0 355 1 570 191 15 52 chr6 179956195 179956228 -2459014 + FLAM_A SINE Alu 100 131 -180 24 0 0 0 chr6 179956856 179956880 -2458362 + AT_rich Low_complexity Low_complexity 1 24 0 431 305 65 0 chr6 179957014 179957168 -2458074 + MIR SINE MIR 83 246 -16 200 204 19 37 chr6 179958371 179958425 -2456817 - L2 LINE L2 0 3313 3261 539 295 261 10 chr6 179958888 179959291 -2455951 - L1MC4a LINE L1 -1907 5901 5398 828 316 169 15 chr6 179960785 179961606 -2453636 - L2 LINE L2 -759 2555 1608 222 37 0 0 chr6 179962377 179962404 -2452838 + (CACCC)n Simple_repeat Simple_repeat 4 30 0 191 302 0 0 chr6 179962816 179962859 -2452383 + L2 LINE L2 3271 3313 0 341 304 217 11 chr6 179963232 179963416 -2451826 - MIR SINE MIR -37 225 4 183 162 0 0 chr6 179963472 179963509 -2451733 + CT-rich Low_complexity Low_complexity 2 38 0 1519 87 5 0 chr6 179964541 179964750 -2450492 - AluSp SINE Alu 0 309 100 234 203 76 25 chr6 179964770 179964849 -2450393 + MLT1I LTR MaLR 1 83 -326 2596 93 11 3 chr6 179964973 179965339 -2449903 + THE1C LTR MaLR 1 369 -6 296 329 36 0 chr6 179965537 179965674 -2449568 - MIR SINE MIR -22 240 99 247 338 37 52 chr6 179966244 179966380 -2448862 + MIR SINE MIR 35 168 -94 1996 190 42 5 chr6 179967393 179967799 -2447443 - MSTB LTR MaLR 0 426 6 189 0 0 0 chr6 179972490 179972511 -2442731 + (TTAGGG)n Simple_repeat Simple_repeat 2 22 0 494 290 7 65 chr6 179973730 179974020 -2441222 - L2 LINE L2 0 3313 3041 2294 72 0 4 chr6 179974216 179974527 -2440715 + AluY SINE Alu 6 315 0 1634 169 58 0 chr6 179975170 179975431 -2439811 + AluJo SINE Alu 1 276 -36 198 0 0 0 chr6 179975437 179975459 -2439783 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 2189 131 0 3 chr6 179975524 179975836 -2439406 + AluSq SINE Alu 1 311 -2 28 0 0 0 chr6 179975943 179975971 -2439271 + AT_rich Low_complexity Low_complexity 1 28 0 1275 230 55 0 chr6 179976834 179977160 -2438082 - L1MB7 LINE L1 -17 6167 5824 1480 158 14 11 chr6 179977160 179977439 -2437803 - L1MC1 LINE L1 -1 6332 6053 2159 137 0 0 chr6 179977723 179978016 -2437226 + AluSx SINE Alu 1 293 -19 2368 74 7 0 chr6 179979771 179980067 -2435175 + AluSx SINE Alu 1 298 -14 188 379 35 9 chr6 179980482 179980598 -2434644 - MIR SINE MIR -66 196 78 709 247 159 22 chr6 179981387 179981707 -2433535 - MLT1A1 LTR MaLR -1 364 1 1579 147 73 15 chr6 179982483 179982756 -2432486 + AluJo SINE Alu 3 291 -21 345 305 62 8 chr6 179984003 179984131 -2431111 - MIR SINE MIR -123 139 5 255 325 24 0 chr6 179984164 179984247 -2430995 - MER5A DNA MER1_type -102 87 3 828 256 0 67 chr6 179984356 179984626 -2430616 - MLT2D LTR ERVL 0 414 163 183 42 0 0 chr6 179985025 179985049 -2430193 + (GA)n Simple_repeat Simple_repeat 2 25 0 567 0 0 0 chr6 179985049 179985112 -2430130 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 315 330 43 34 chr6 179985808 179986041 -2429201 + L1ME4a LINE L1 5088 5322 -824 28 48 0 0 chr6 179986071 179986113 -2429129 + AT_rich Low_complexity Low_complexity 1 42 0 330 301 60 74 chr6 179986136 179986372 -2428870 + L1ME4a LINE L1 5387 5625 -496 2197 114 3 13 chr6 179986372 179986687 -2428555 + AluSx SINE Alu 1 312 0 330 301 60 74 chr6 179986687 179987029 -2428213 + L1ME4a LINE L1 5625 5957 -164 2551 57 0 0 chr6 179987040 179987341 -2427901 + AluY SINE Alu 1 301 -10 2500 42 28 0 chr6 179987503 179987792 -2427450 - AluY SINE Alu -14 297 1 669 239 0 0 chr6 179987876 179988018 -2427224 - FLAM_C SINE Alu 0 143 2 239 270 40 40 chr6 179990377 179990451 -2424791 + L2 LINE L2 3240 3313 0 203 306 14 14 chr6 179990452 179990524 -2424718 + MIR3 SINE MIR 92 163 -45 331 104 15 30 chr6 179990858 179990925 -2424317 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 636 228 115 65 chr6 179991057 179991413 -2423829 + MLT1A2 LTR MaLR 1 374 0 218 283 7 51 chr6 179991515 179991653 -2423589 + C-rich Low_complexity Low_complexity 6 137 0 269 286 5 43 chr6 179991659 179991844 -2423398 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 * 364 229 0 69 chr6 179991715 179991903 -2423339 + C-rich Low_complexity Low_complexity 3 177 0 * 384 253 16 39 chr6 179991805 179991987 -2423255 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 326 192 0 88 chr6 179991916 179992109 -2423133 + C-rich Low_complexity Low_complexity 4 179 0 * 235 256 37 0 chr6 179992546 179992628 -2422614 - MER53 DNA DNA -104 85 1 459 249 118 9 chr6 179993523 179993744 -2421498 - L1ME3A LINE L1 -7 6163 5919 1598 205 31 17 chr6 179994095 179994340 -2420902 - MER46B DNA MER2_type -2495 236 108 2758 70 0 0 chr6 179994340 179994695 -2420547 + THE1A LTR MaLR 1 355 0 1598 205 31 17 chr6 179994695 179994805 -2420437 - MER46B DNA MER2_type -2623 108 1 411 339 23 18 chr6 179995786 179996007 -2419235 + L2 LINE L2 3092 3313 0 194 149 75 0 chr6 179996505 179996572 -2418670 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 273 115 88 18 chr6 179996593 179996706 -2418536 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 1993 153 48 46 chr6 179999298 179999715 -2415527 + LTR3 LTR ERVK 5 422 -10 343 139 25 0 chr6 179999866 179999945 -2415297 + Charlie5 DNA MER1_type 2538 2618 0 218 307 13 0 chr6 180000372 180000447 -2414795 + MIR SINE MIR 92 167 -95 2381 107 0 0 chr6 180001804 180002103 -2413139 + AluSx SINE Alu 3 301 -11 255 157 0 0 chr6 180002797 180002848 -2412394 + CT-rich Low_complexity Low_complexity 1 51 0 326 336 37 48 chr6 180003281 180003576 -2411666 + L2 LINE L2 1863 2154 -1160 1629 209 67 5 chr6 180003629 180004002 -2411240 + MSTD LTR MaLR 1 396 0 470 218 32 0 chr6 180004616 180004740 -2410502 - LTR33 LTR ERVL 0 521 394 946 201 19 46 chr6 180004752 180005011 -2410231 + L1MB8 LINE L1 5920 6171 -7 1474 254 12 3 chr6 180007864 180008210 -2407032 - LTR40a LTR ERVL -5 514 166 340 298 30 23 chr6 180008285 180008416 -2406826 - MIR SINE MIR -99 163 32 1993 111 0 0 chr6 180008496 180008758 -2406484 + AluSx SINE Alu 1 262 -50 485 69 0 0 chr6 180008758 180008816 -2406426 + AluSq/x SINE Alu 59 116 -197 192 77 0 0 chr6 180008826 180008852 -2406390 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 469 223 27 0 chr6 180009684 180009796 -2405446 - L1MA10 LINE L1 -10 6324 6210 21 57 0 0 chr6 180010040 180010075 -2405167 + AT_rich Low_complexity Low_complexity 1 35 0 2231 105 3 6 chr6 180010343 180010657 -2404585 + AluSq SINE Alu 1 313 0 493 99 0 0 chr6 180010669 180010740 -2404502 + L1MB8 LINE L1 5838 5908 -270 329 316 30 0 chr6 180010741 180010874 -2404368 + L1ME3A LINE L1 3373 3509 -2637 1989 290 93 42 chr6 180010948 180013374 -2401868 + L1ME3A LINE L1 3599 6142 -28 235 277 42 25 chr6 180013530 180013649 -2401593 + HAL1 LINE L1 1758 1878 -629 210 91 0 0 chr6 180014088 180014121 -2401121 + (CCCTAA)n Simple_repeat Simple_repeat 2 34 0 2354 82 10 3 chr6 180014316 180014619 -2400623 - AluSc SINE Alu -4 305 1 501 248 0 8 chr6 180014707 180014828 -2400414 - MER58 DNA MER1_type -221 120 1 1131 164 78 9 chr6 180014995 180015214 -2400028 + MER46A DNA MER2_type 1 234 -2 21 0 0 0 chr6 180015403 180015424 -2399818 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 180015803 180015827 -2399415 + AT_rich Low_complexity Low_complexity 1 24 0 1869 136 0 10 chr6 180015840 180016134 -2399108 + AluSx SINE Alu 22 312 0 2530 78 0 0 chr6 180016363 180016671 -2398571 + AluSx SINE Alu 4 311 -1 219 279 168 50 chr6 180016948 180017109 -2398133 - MIR SINE MIR -49 213 34 245 286 63 16 chr6 180017493 180017619 -2397623 - MLT1I LTR MaLR -231 178 47 181 222 0 188 chr6 180018291 180018368 -2396874 - MIR SINE MIR -56 206 157 2452 72 3 3 chr6 180018368 180018674 -2396568 - AluY SINE Alu -5 306 1 181 222 0 188 chr6 180018674 180018713 -2396529 - MIR SINE MIR -105 157 112 280 316 51 10 chr6 180018934 180019032 -2396210 - MER5A DNA MER1_type 0 189 88 540 228 80 21 chr6 180019072 180019309 -2395933 + L1MC5 LINE L1 7610 7860 -101 287 153 42 28 chr6 180019959 180020031 -2395211 - L1MEd LINE L1 -4917 1202 1130 1930 106 38 38 chr6 180020199 180020368 -2394874 - AluSg SINE Alu -17 293 122 2156 94 3 29 chr6 180020368 180020677 -2394565 - AluSp SINE Alu -12 301 1 1930 106 38 38 chr6 180020677 180020800 -2394442 - AluSg SINE Alu -187 123 1 1146 200 56 0 chr6 180020816 180021086 -2394156 - L1PA16 LINE L1 -16 6150 5866 21 36 0 0 chr6 180022114 180022142 -2393100 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 180022194 180022222 -2393020 + AT_rich Low_complexity Low_complexity 1 28 0 2427 44 0 3 chr6 180023004 180023297 -2391945 - AluY SINE Alu -19 292 1 375 23 0 0 chr6 180023642 180023686 -2391556 + (CA)n Simple_repeat Simple_repeat 1 44 0 2117 115 133 38 chr6 180023712 180024103 -2391139 - MSTA LTR MaLR 0 428 1 2271 84 6 26 chr6 180025391 180025702 -2389540 - AluY SINE Alu -6 305 1 450 261 150 98 chr6 180027499 180028454 -2386788 + L1M2 LINE L1 588 1437 -5412 364 306 78 68 chr6 180028451 180028979 -2386263 - L1M2 LINE L1 -5716 1133 617 * 22 56 0 0 chr6 180028983 180029019 -2386223 + GC_rich Low_complexity Low_complexity 1 36 0 193 114 0 45 chr6 180029024 180029068 -2386174 + (CCCCCT)n Simple_repeat Simple_repeat 2 43 0 21 71 0 0 chr6 180029125 180029167 -2386075 + GC_rich Low_complexity Low_complexity 1 42 0 56 55 0 0 chr6 180029211 180029302 -2385940 + GC_rich Low_complexity Low_complexity 1 91 0 267 268 294 31 chr6 180031905 180032099 -2383143 + L2 LINE L2 3025 3269 -3 2143 132 16 0 chr6 180032618 180032921 -2382321 - AluSx SINE Alu -4 308 1 332 215 0 0 chr6 180034620 180034685 -2380557 + MER94 DNA DNA 42 106 -28 2091 110 19 0 chr6 180035791 180036108 -2379134 - L1PB1 LINE L1 -1 6150 5828 198 0 0 0 chr6 180036142 180036164 -2379078 + (T)n Simple_repeat Simple_repeat 1 22 0 3283 220 62 11 chr6 180036374 180036391 -2378851 - Charlie1a DNA MER1_type -1845 916 901 1634 164 3 27 chr6 180036391 180036683 -2378559 + AluJo SINE Alu 10 294 -18 3283 220 62 11 chr6 180036683 180037537 -2377705 - Charlie1a DNA MER1_type -1860 901 1 30 0 0 0 chr6 180038737 180038767 -2376475 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr6 180039069 180039102 -2376140 + AT_rich Low_complexity Low_complexity 1 33 0 739 282 57 25 chr6 180039244 180039489 -2375753 - MIR SINE MIR -2 260 8 199 259 0 19 chr6 180041142 180041196 -2374046 - L2 LINE L2 0 3313 3261 212 348 43 71 chr6 180041630 180041912 -2373330 - L2 LINE L2 -28 3244 2971 590 284 82 20 chr6 180042037 180042340 -2372902 + MLT1I LTR MaLR 63 384 -25 245 311 132 52 chr6 180042794 180043241 -2372001 - L2 LINE L2 -831 2483 2001 205 254 0 18 chr6 180043576 180043631 -2371611 + CT-rich Low_complexity Low_complexity 1 54 0 306 0 0 0 chr6 180045868 180045902 -2369340 + (TG)n Simple_repeat Simple_repeat 2 35 0 570 186 59 10 chr6 180045905 180046007 -2369235 - FLAM_A SINE Alu -27 115 9 367 274 118 35 chr6 180046179 180046526 -2368716 - L1ME LINE L1 -363 5758 5383 1963 174 0 6 chr6 180046531 180046842 -2368400 - AluJb SINE Alu -2 310 2 239 0 0 31 chr6 180047057 180047089 -2368153 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 1787 114 91 0 chr6 180047091 180047354 -2367888 - AluSp SINE Alu -24 289 3 1730 106 117 46 chr6 180047463 180047813 -2367429 - THE1C LTR MaLR 0 375 1 1509 280 208 52 chr6 180048763 180049723 -2365519 + L2 LINE L2 1867 2976 -338 416 302 189 15 chr6 180050098 180050363 -2364879 - L1MC4a LINE L1 -1957 5851 5541 801 282 44 20 chr6 180050658 180050910 -2364332 + MIR SINE MIR 2 259 -3 497 96 75 261 chr6 180052575 180052763 -2362479 - AluSg/x SINE Alu -29 281 129 1179 137 39 5 chr6 180052948 180053152 -2362090 - L1PA12 LINE L1 0 6168 5958 304 301 146 40 chr6 180053213 180053412 -2361830 - MIR SINE MIR -6 256 37 261 219 96 0 chr6 180053913 180053986 -2361256 - L1MC5 LINE L1 -384 7577 7498 343 165 106 12 chr6 180054246 180054331 -2360911 - L1MC4 LINE L1 -830 7212 7120 902 247 32 43 chr6 180054460 180054859 -2360383 - L1MC5 LINE L1 -883 6925 6562 21 0 0 0 chr6 180054883 180054904 -2360338 + AT_rich Low_complexity Low_complexity 1 21 0 898 295 98 19 chr6 180055379 180056012 -2359230 - L1MC5 LINE L1 -1871 5937 5255 373 307 100 47 chr6 180056033 180056372 -2358870 - L1MC5 LINE L1 -913 5233 4877 26 0 0 0 chr6 180057031 180057057 -2358185 + AT_rich Low_complexity Low_complexity 1 26 0 2387 188 57 23 chr6 180057560 180058091 -2357151 + MER44D DNA MER2_type 1 604 -1 297 274 28 28 chr6 180058321 180058427 -2356815 - MIR SINE MIR -40 222 117 447 354 87 0 chr6 180058933 180059128 -2356114 + L3 LINE CR1 381 592 -985 407 215 15 67 chr6 180059213 180059348 -2355894 + Charlie4a DNA MER1_type 3 130 -378 254 191 170 57 chr6 180059348 180059489 -2355753 + Charlie4a DNA MER1_type 239 395 -113 211 267 53 40 chr6 180060468 180060543 -2354699 - MIR SINE MIR -91 171 96 204 40 0 0 chr6 180060746 180060771 -2354471 + (T)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr6 180061834 180061857 -2353385 + (T)n Simple_repeat Simple_repeat 1 23 0 233 316 35 53 chr6 180062058 180062172 -2353070 - L2 LINE L2 -36 3277 3166 272 261 216 30 chr6 180062178 180062312 -2352930 - MIR SINE MIR -15 247 89 225 163 0 0 chr6 180062739 180062788 -2352454 + C-rich Low_complexity Low_complexity 4 52 0 2241 89 7 0 chr6 180064051 180064342 -2350900 - AluSx SINE Alu -18 294 2 1184 193 21 9 chr6 180064748 180064981 -2350261 + MER46A DNA MER2_type 1 236 0 210 320 124 7 chr6 180065093 180065246 -2349996 - L2 LINE L2 -509 2805 2635 492 92 53 0 chr6 180065547 180065623 -2349619 - MADE1 DNA Mariner 0 80 1 269 298 44 39 chr6 180065735 180065890 -2349352 + MIR SINE MIR 1 160 -102 204 293 0 32 chr6 180065973 180066052 -2349190 - MIR SINE MIR -45 163 86 1587 136 94 23 chr6 180067028 180067293 -2347949 + AluJo SINE Alu 7 290 -22 1136 289 95 20 chr6 180068052 180068558 -2346684 - MER119 DNA MER1_type -3 580 37 2269 81 10 10 chr6 180069093 180069400 -2345842 - AluSg SINE Alu -1 309 3 568 261 0 9 chr6 180069936 180070051 -2345191 + FLAM_A SINE Alu 1 114 -19 1667 173 0 43 chr6 180070435 180070736 -2344506 - AluJo SINE Alu -11 301 14 646 191 46 0 chr6 180073627 180073758 -2341484 - L1ME2 LINE L1 -1 6163 6027 224 225 0 0 chr6 180073955 180073995 -2341247 + polypurine Low_complexity Low_complexity 2 41 0 376 276 54 32 chr6 180075037 180075258 -2339984 - L1ME2 LINE L1 -283 5838 5613 282 209 36 24 chr6 180075411 180075510 -2339732 - L1ME2 LINE L1 -949 5395 5312 672 207 86 0 chr6 180075779 180075919 -2339323 + AluJb SINE Alu 149 300 -12 25 0 0 0 chr6 180076022 180076047 -2339195 + AT_rich Low_complexity Low_complexity 1 25 0 2252 112 7 0 chr6 180076280 180076583 -2338659 - AluSp SINE Alu -8 305 1 562 221 110 67 chr6 180077396 180077695 -2337547 - L1MC5 LINE L1 -41 7920 7609 195 329 80 70 chr6 180078564 180078938 -2336304 - L2 LINE L2 -561 2753 2376 282 29 0 0 chr6 180080186 180080249 -2334993 + (TC)n Simple_repeat Simple_repeat 1 98 0 282 29 0 0 chr6 180080249 180080284 -2334958 + (TC)n Simple_repeat Simple_repeat 1 35 0 662 269 127 36 chr6 180080296 180080798 -2334444 + L2 LINE L2 2733 3264 -49 364 279 108 44 chr6 180081038 180081196 -2334046 - MIR3 SINE MIR -5 203 36 1532 222 31 9 chr6 180082422 180082846 -2332396 - L1ME2 LINE L1 -1287 4859 4427 508 268 137 55 chr6 180083012 180083486 -2331756 + HAL1 LINE L1 63 575 -1932 1628 270 110 44 chr6 180083589 180084044 -2331198 + HAL1 LINE L1 763 1187 -1320 1482 124 113 42 chr6 180084044 180084309 -2330933 + AluSg SINE Alu 1 284 -26 1628 270 110 44 chr6 180084309 180084898 -2330344 + HAL1 LINE L1 1187 1876 -631 287 244 58 0 chr6 180084896 180084982 -2330260 + HAL1 LINE L1 2281 2371 -136 * 13482 123 57 18 chr6 180085162 180087488 -2327754 - Tigger1 DNA MER2_type 0 2418 1 277 156 52 26 chr6 180087750 180087827 -2327415 + L1ME4a LINE L1 6042 6120 -1 1524 85 15 0 chr6 180088490 180088690 -2326552 + AluSg/x SINE Alu 103 305 -7 2145 128 3 6 chr6 180089097 180089410 -2325832 - AluSx SINE Alu 0 312 1 27 29 0 0 chr6 180089456 180089490 -2325752 + AT_rich Low_complexity Low_complexity 1 34 0 1439 70 16 0 chr6 180091103 180091289 -2323953 - AluSq SINE Alu -28 285 97 648 103 0 10 chr6 180092030 180092127 -2323115 - L1PB1 LINE L1 -3 6148 6053 369 0 0 0 chr6 180093058 180093099 -2322143 + (TG)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 180094093 180094114 -2321128 + AT_rich Low_complexity Low_complexity 1 21 0 319 304 70 9 chr6 180094281 180094396 -2320846 - L2 LINE L2 -3 3310 3189 234 241 52 0 chr6 180097612 180097670 -2317572 + HsTC2 DNA Tc2 7 67 -1831 333 331 35 21 chr6 180097941 180098086 -2317156 - MER5A DNA MER1_type 0 189 43 22 0 0 0 chr6 180098724 180098746 -2316496 + AT_rich Low_complexity Low_complexity 1 22 0 248 278 76 56 chr6 180098845 180098989 -2316253 + MIR SINE MIR 111 257 -5 2329 82 10 0 chr6 180099286 180099589 -2315653 - AluSc SINE Alu -3 306 1 2267 103 3 3 chr6 180103454 180103756 -2311486 + AluSx SINE Alu 1 302 -10 1840 156 3 36 chr6 180104112 180104445 -2310797 - MER44D DNA MER2_type -9 600 9 205 343 19 19 chr6 180104686 180104791 -2310451 + L2 LINE L2 1542 1646 -1668 565 259 95 25 chr6 180104794 180105218 -2310024 - MLT1H LTR MaLR -2 588 51 1105 312 79 44 chr6 180105255 180105853 -2309389 + L2 LINE L2 1648 2284 -1030 1831 151 7 3 chr6 180105853 180106152 -2309090 - AluSx SINE Alu -12 300 1 1105 312 79 44 chr6 180106152 180106374 -2308868 + L2 LINE L2 2284 2497 -817 222 320 48 72 chr6 180106886 180107011 -2308231 + L2 LINE L2 3192 3313 0 390 314 120 34 chr6 180107072 180107422 -2307820 - L1ME4a LINE L1 -38 6083 5704 316 324 90 45 chr6 180107423 180107465 -2307777 + L1ME4a LINE L1 5613 5652 -469 2382 77 7 0 chr6 180107465 180107763 -2307479 + AluY SINE Alu 1 300 -11 316 324 90 45 chr6 180107763 180107964 -2307278 + L1ME4a LINE L1 5652 5867 -254 219 227 68 45 chr6 180109811 180109899 -2305343 - MIR SINE MIR -85 123 34 28 71 0 0 chr6 180110924 180110980 -2304262 + AT_rich Low_complexity Low_complexity 1 56 0 257 254 8 76 chr6 180111811 180111929 -2303313 + MER112 DNA MER1_type 1 110 -150 692 220 79 0 chr6 180113429 180113606 -2301636 - L1MB5 LINE L1 -9 6165 5975 2171 122 84 2 chr6 180117246 180117640 -2297602 + Tigger4(Zombi) DNA MER2_type 2306 2731 0 1436 201 117 15 chr6 180117640 180118033 -2297209 - MLT1C LTR MaLR -32 435 3 567 277 109 50 chr6 180119431 180119853 -2295389 + L1ME3A LINE L1 5718 6164 -6 650 280 78 14 chr6 180120942 180121160 -2294082 + MIR SINE MIR 8 239 -23 24 0 0 0 chr6 180123310 180123334 -2291908 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 180123434 180123455 -2291787 + AT_rich Low_complexity Low_complexity 1 21 0 2368 76 7 7 chr6 180125256 180125560 -2289682 - AluSx SINE Alu -8 304 1 23 0 0 0 chr6 180125728 180125751 -2289491 + AT_rich Low_complexity Low_complexity 1 23 0 359 325 47 41 chr6 180127116 180127285 -2287957 - MER5A DNA MER1_type -6 183 14 1410 145 46 30 chr6 180128073 180128335 -2286907 - AluJo SINE Alu -14 298 33 235 158 88 18 chr6 180128491 180128548 -2286694 + L2 LINE L2 3244 3304 -9 208 283 19 75 chr6 180129104 180129210 -2286032 - L2 LINE L2 -568 2746 2647 1568 198 3 13 chr6 180131548 180131851 -2283391 + AluJb SINE Alu 1 300 -12 417 235 87 7 chr6 180132250 180132399 -2282843 - MER58B DNA MER1_type -5 336 176 489 222 54 184 chr6 180132404 180133085 -2282157 - L2 LINE L2 -508 2806 2214 209 359 28 21 chr6 180133484 180133626 -2281616 + MIR SINE MIR 24 166 -96 22 35 0 0 chr6 180134836 180134865 -2280377 + AT_rich Low_complexity Low_complexity 1 29 0 951 201 149 28 chr6 180137567 180137856 -2277386 - MER33 DNA MER1_type 0 324 1 619 162 68 0 chr6 180139046 180139163 -2276079 - FLAM_C SINE Alu -18 125 1 331 265 118 10 chr6 180141171 180141273 -2273969 + L2 LINE L2 3200 3312 -1 28 48 0 0 chr6 180141573 180141615 -2273627 + AT_rich Low_complexity Low_complexity 1 42 0 276 53 0 0 chr6 180143460 180143498 -2271744 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr6 180145021 180145044 -2270198 + AT_rich Low_complexity Low_complexity 1 23 0 286 274 0 51 chr6 180145478 180145595 -2269647 - MIR SINE MIR -51 211 101 209 119 214 0 chr6 180145722 180145764 -2269478 + L2 LINE L2 3219 3269 -3 5182 178 81 14 chr6 180145963 180147117 -2268125 - Tigger3b DNA MER2_type 0 1231 1 24 0 0 0 chr6 180147134 180147158 -2268084 + AT_rich Low_complexity Low_complexity 1 24 0 2349 63 7 17 chr6 180148565 180148866 -2266376 - AluY SINE Alu -13 298 1 519 204 44 7 chr6 180148866 180149003 -2266239 + MER58C DNA MER1_type 74 215 0 246 32 0 0 chr6 180151780 180151811 -2263431 + (TG)n Simple_repeat Simple_repeat 2 32 0 871 96 30 44 chr6 180152248 180152383 -2262859 - FLAM_C SINE Alu 0 133 1 203 236 0 0 chr6 180153473 180153528 -2261714 + GA-rich Low_complexity Low_complexity 3 57 0 787 181 52 16 chr6 180153910 180154103 -2261139 - MER58A DNA MER1_type -3 221 22 21 0 0 0 chr6 180154445 180154466 -2260776 + AT_rich Low_complexity Low_complexity 1 21 0 234 306 0 28 chr6 180156910 180156982 -2258260 - L2 LINE L2 -4 3309 3240 2208 116 3 0 chr6 180157223 180157526 -2257716 + AluSx SINE Alu 5 308 -4 655 316 153 31 chr6 180157772 180158316 -2256926 + L2 LINE L2 2080 2689 -625 1780 143 82 0 chr6 180159395 180159723 -2255519 + MER46B DNA MER2_type 1 230 -6 23 0 0 0 chr6 180162442 180162465 -2252777 + AT_rich Low_complexity Low_complexity 1 23 0 279 260 27 0 chr6 180162564 180162637 -2252605 + L3 LINE CR1 1484 1558 -19 261 288 294 33 chr6 180162740 180163101 -2252141 + L3 LINE CR1 969 1423 -154 186 103 0 0 chr6 180163707 180163736 -2251506 + (TG)n Simple_repeat Simple_repeat 2 30 0 441 0 0 0 chr6 180165998 180166047 -2249195 + (TG)n Simple_repeat Simple_repeat 2 50 0 204 160 20 20 chr6 180167273 180167323 -2247919 + C-rich Low_complexity Low_complexity 6 55 0 180 0 0 0 chr6 180167397 180167417 -2247825 + (GGA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr6 180168768 180168789 -2246453 + AT_rich Low_complexity Low_complexity 1 21 0 469 192 58 33 chr6 180173909 180174029 -2241213 + L1MA7 LINE L1 5987 6109 -182 395 223 38 41 chr6 180176602 180176831 -2238411 - MER31B LTR ERV1 -29 437 134 561 206 87 11 chr6 180177258 180177442 -2237800 - Charlie5 DNA MER1_type -75 2537 2340 357 209 0 134 chr6 180178646 180178847 -2236395 + C-rich Low_complexity Low_complexity 3 176 0 283 120 0 154 chr6 180178851 180179059 -2236183 + (TCCCC)n Simple_repeat Simple_repeat 2 177 0 304 122 0 149 chr6 180179091 180179395 -2235847 + (TCCCC)n Simple_repeat Simple_repeat 1 258 0 237 250 100 117 chr6 180179435 180179555 -2235687 - L2 LINE L2 -49 3223 3106 2990 217 92 65 chr6 180180052 180180090 -2235152 + L1MB8 LINE L1 91 127 -7011 4928 125 22 17 chr6 180180090 180180865 -2234377 - MER4E LTR ERV1 0 779 1 2990 217 92 65 chr6 180180865 180181413 -2233829 + L1MB8 LINE L1 127 659 -6479 2154 159 10 23 chr6 180181413 180181804 -2233438 - MLT1B LTR MaLR 0 390 5 2990 217 92 65 chr6 180181804 180181874 -2233368 + L1MB8 LINE L1 659 726 -6412 2555 76 0 0 chr6 180181874 180182175 -2233067 + AluSc SINE Alu 1 301 -8 2990 217 92 65 chr6 180182175 180183390 -2231852 + L1MB8 LINE L1 726 2324 -4814 2016 133 75 26 chr6 180183390 180183736 -2231506 + THE1B LTR MaLR 1 363 -1 2990 217 92 65 chr6 180183736 180184110 -2231132 + L1MB8 LINE L1 2324 2687 -4451 396 295 44 84 chr6 180184113 180184340 -2230902 + L1MEc LINE L1 1709 1926 -4470 907 263 28 22 chr6 180184346 180184665 -2230577 + L1MEc LINE L1 2503 2823 -3392 577 192 19 89 chr6 180184751 180184867 -2230375 + L1MB8 LINE L1 5079 5202 -1783 836 172 0 15 chr6 180184867 180185001 -2230241 + FLAM_C SINE Alu 2 133 0 2376 103 3 3 chr6 180185007 180185318 -2229924 + AluSx SINE Alu 1 311 -1 577 192 19 89 chr6 180185318 180185590 -2229652 + L1MB8 LINE L1 5207 6365 -620 617 138 4 233 chr6 180185600 180185875 -2229367 - MER51C LTR ERV1 0 640 429 1969 205 70 14 chr6 180186122 180186664 -2228578 + L1MB8 LINE L1 6371 6987 -2 2041 139 27 9 chr6 180186842 180187173 -2228069 + MER1B DNA MER1_type 1 337 0 242 292 125 5 chr6 180187430 180187646 -2227596 + L2 LINE L2 2719 2960 -354 915 308 65 0 chr6 180187899 180188224 -2227018 - MER7A DNA MER2_type 0 346 3 274 178 49 135 chr6 180188713 180188820 -2226422 - L1MB8 LINE L1 0 6184 6086 739 237 147 51 chr6 180188820 180189153 -2226089 - MLT1A1 LTR MaLR 0 365 1 274 178 49 135 chr6 180189153 180189200 -2226042 - L1MB8 LINE L1 -98 6086 6037 716 264 116 32 chr6 180189608 180189987 -2225255 + MLT1D LTR MaLR 90 500 -5 2292 58 4 4 chr6 180192983 180193260 -2221982 - AluY SINE Alu -34 277 1 2100 135 3 6 chr6 180193262 180193593 -2221649 - AluY SINE Alu 0 311 1 2218 99 7 0 chr6 180195853 180196147 -2219095 + AluSx SINE Alu 2 297 -15 21 0 0 0 chr6 180196441 180196462 -2218780 + GC_rich Low_complexity Low_complexity 1 21 0 2152 94 7 0 chr6 180196462 180196739 -2218503 - AluSx SINE Alu -32 280 2 1092 255 51 5 chr6 180196987 180197435 -2217807 - LTR69 LTR ERVL -6 582 73 222 321 8 23 chr6 180198218 180198349 -2216893 + G-rich Low_complexity Low_complexity 5 133 0 340 348 0 11 chr6 180198705 180198886 -2216356 + G-rich Low_complexity Low_complexity 2 180 0 327 238 25 0 chr6 180199365 180199445 -2215797 - MIR SINE MIR -10 252 171 2303 102 0 3 chr6 180200139 180200444 -2214798 + AluSx SINE Alu 1 304 -8 288 206 33 65 chr6 180201261 180201445 -2213797 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 272 269 29 57 chr6 180201414 180201589 -2213653 + C-rich Low_complexity Low_complexity 5 174 0 * 274 237 24 53 chr6 180201624 180201793 -2213449 + (CACCC)n Simple_repeat Simple_repeat 3 166 0 849 209 121 23 chr6 180202363 180202578 -2212664 - MER46A DNA MER2_type 0 236 1 3302 134 39 12 chr6 180203691 180204204 -2211038 - MER1A DNA MER1_type 0 527 1 444 347 147 3 chr6 180205066 180205400 -2209842 + L1MC4a LINE L1 6502 6883 -925 354 296 135 4 chr6 180205487 180205717 -2209525 + L1MC5 LINE L1 6947 7206 -755 463 264 47 0 chr6 180206295 180206443 -2208799 - MER34 LTR ERV1 0 542 388 592 284 31 31 chr6 180206531 180206588 -2208654 - MER34 LTR ERV1 -278 264 208 3333 73 20 9 chr6 180206588 180207027 -2208215 - MLT2A1 LTR ERVL 0 444 1 592 284 31 31 chr6 180207027 180207223 -2208019 - MER34 LTR ERV1 -333 209 11 384 332 20 57 chr6 180207264 180207286 -2207956 + L1MC5 LINE L1 7666 7687 -274 849 134 8 22 chr6 180207286 180207420 -2207822 - FLAM_C SINE Alu 0 133 2 384 332 20 57 chr6 180207420 180207641 -2207601 + L1MC5 LINE L1 7687 7900 -61 324 200 111 0 chr6 180208090 180208180 -2207062 - L1MA9 LINE L1 -4 6308 6209 2220 114 10 3 chr6 180208219 180208525 -2206717 + AluSq SINE Alu 3 310 -3 431 169 0 0 chr6 180208576 180208647 -2206595 - LTR51 LTR ERV1 0 671 601 * 1904 160 59 17 chr6 180208645 180209001 -2206241 - LTR51 LTR ERV1 -300 371 1 12421 193 31 55 chr6 180209245 180215069 -2200173 - L1 LINE L1 -1077 5711 11 24 0 0 0 chr6 180215085 180215109 -2200133 + AT_rich Low_complexity Low_complexity 1 24 0 189 389 22 0 chr6 180217784 180217874 -2197368 - L2 LINE L2 -598 2716 2625 183 42 0 0 chr6 180218279 180218303 -2196939 + (CA)n Simple_repeat Simple_repeat 2 25 0 802 227 16 16 chr6 180218799 180218993 -2196249 - MER58A DNA MER1_type -2 222 29 1844 188 9 3 chr6 180219269 180219599 -2195643 + MER47A DNA MER2_type 35 366 0 1655 246 124 27 chr6 180219952 180220654 -2194588 + L1MEc LINE L1 564 1333 -5230 419 232 24 8 chr6 180220680 180220805 -2194437 + L1MB3 LINE L1 6055 6181 -2 2192 92 7 0 chr6 180220943 180221257 -2193985 + AluSc SINE Alu 5 320 0 405 307 95 2 chr6 180221272 180221525 -2193717 + L1MEc LINE L1 1551 1908 -835 737 274 70 29 chr6 180221527 180221940 -2193302 + L1MEc LINE L1 1968 2397 -4166 869 235 65 0 chr6 180222015 180222275 -2192967 + L1M4 LINE L1 4583 4859 -1287 904 207 31 9 chr6 180222600 180222822 -2192420 - L1MB3 LINE L1 -2 6181 5955 495 271 21 14 chr6 180222838 180222982 -2192260 - MER92B LTR ERV1 -491 145 1 352 261 73 56 chr6 180223103 180223498 -2191744 - L1MEd LINE L1 -4863 1256 855 948 159 0 0 chr6 180223513 180223658 -2191584 - FRAM SINE Alu -12 164 20 203 167 0 0 chr6 180223831 180223873 -2191369 + T-rich Low_complexity Low_complexity 1 42 0 2165 136 10 0 chr6 180224345 180224646 -2190596 - AluSx SINE Alu -2 310 7 1028 116 7 0 chr6 180224647 180224785 -2190457 - AluSq/x SINE Alu -174 139 1 243 0 0 0 chr6 180225509 180225536 -2189706 + (T)n Simple_repeat Simple_repeat 1 27 0 701 86 0 0 chr6 180225757 180225850 -2189392 + AluS SINE Alu 2 94 -218 2431 105 0 0 chr6 180225851 180226156 -2189086 + AluSx SINE Alu 1 305 -7 23 0 0 0 chr6 180227792 180227815 -2187427 + AT_rich Low_complexity Low_complexity 1 23 0 312 244 0 47 chr6 180227994 180228080 -2187162 - L2 LINE L2 -6 3266 3185 2223 108 3 7 chr6 180228253 180228558 -2186684 + AluSx SINE Alu 1 304 -8 57 0 0 0 chr6 180229253 180229310 -2185932 + AT_rich Low_complexity Low_complexity 1 57 0 853 143 8 0 chr6 180229313 180229432 -2185810 - AluJb SINE Alu -192 120 1 356 330 55 52 chr6 180229721 180230300 -2184942 - L1M4 LINE L1 -1538 4608 4028 305 175 18 0 chr6 180230301 180230358 -2184884 + MER58 DNA MER1_type 2363 2420 0 250 268 80 49 chr6 180230358 180230582 -2184660 + L1MC5 LINE L1 7498 7728 -233 232 276 23 0 chr6 180230797 180230884 -2184358 + L1MC5 LINE L1 7843 7931 -30 388 177 15 39 chr6 180231479 180231609 -2183633 + CT-rich Low_complexity Low_complexity 4 130 0 1253 133 15 0 chr6 180232896 180233091 -2182151 - MER4E LTR ERV1 0 766 569 1370 157 118 11 chr6 180233093 180233373 -2181869 - MER4B LTR ERV1 -300 310 1 205 329 171 0 chr6 180233851 180233933 -2181309 + MER5B DNA MER1_type 79 174 -4 2078 146 0 0 chr6 180234312 180234599 -2180643 + AluSx SINE Alu 13 299 -13 2134 133 0 10 chr6 180235339 180235641 -2179601 - AluSx SINE Alu -13 299 1 586 61 0 24 chr6 180235960 180236042 -2179200 + AluSg1 SINE Alu 2 81 -228 200 263 38 0 chr6 180236499 180236579 -2178663 + G-rich Low_complexity Low_complexity 6 88 0 191 333 26 35 chr6 180236839 180236953 -2178289 + MIR SINE MIR 35 147 -115 2214 138 0 0 chr6 180237862 180238174 -2177068 + AluSx SINE Alu 1 312 0 225 0 0 0 chr6 180238728 180238753 -2176489 + (TC)n Simple_repeat Simple_repeat 2 26 0 1833 118 103 0 chr6 180238834 180239096 -2176146 - AluSc SINE Alu -20 289 1 590 159 43 7 chr6 180240047 180240185 -2175057 + L1MA9 LINE L1 6164 6306 -6 25 51 0 0 chr6 180240211 180240250 -2174992 + AT_rich Low_complexity Low_complexity 1 39 0 224 298 119 0 chr6 180240263 180240347 -2174895 - MIR SINE MIR -77 185 92 2327 119 3 3 chr6 180241366 180241678 -2173564 + AluSx SINE Alu 1 312 0 285 257 184 0 chr6 180242014 180242166 -2173076 - MER5A DNA MER1_type -7 182 3 235 246 18 0 chr6 180242211 180242268 -2172974 - MLT1J2 LTR MaLR -47 403 346 225 325 26 18 chr6 180246467 180246581 -2168661 + MIR SINE MIR 25 139 -123 500 206 12 75 chr6 180247595 180247755 -2167487 - MER33 DNA MER1_type -115 209 60 352 176 29 147 chr6 180247797 180247973 -2167269 - MER20B DNA MER1_type -5 778 645 2282 105 13 0 chr6 180247973 180248277 -2166965 + AluSx SINE Alu 1 308 -4 352 176 29 147 chr6 180248277 180248379 -2166863 - MER20B DNA MER1_type -138 645 533 1201 278 53 39 chr6 180248474 180248960 -2166282 - MER20B DNA MER1_type -257 526 34 654 283 88 0 chr6 180252209 180252460 -2162782 + MLT1A1 LTR MaLR 24 296 -69 2040 128 13 17 chr6 180252822 180253120 -2162122 - AluJb SINE Alu -15 297 1 322 269 112 46 chr6 180253756 180253953 -2161289 - MER69 DNA AcHobo -18 2508 2299 296 339 78 0 chr6 180254297 180254527 -2160715 - MER69 DNA AcHobo -894 332 85 197 277 75 0 chr6 180255017 180255111 -2160131 + MER5A DNA MER1_type 61 161 -28 363 263 0 0 chr6 180256126 180256244 -2158998 + (TG)n Simple_repeat Simple_repeat 2 119 0 231 242 137 32 chr6 180258486 180258581 -2156661 - MIR3 SINE MIR -16 192 88 230 309 6 36 chr6 180259026 180259194 -2156048 + (CCCTG)n Simple_repeat Simple_repeat 2 164 0 222 211 0 0 chr6 180265269 180265307 -2149935 - MIR SINE MIR -60 148 111 193 174 0 22 chr6 180267767 180267813 -2147429 + L2 LINE L2 3269 3313 0 24 53 0 0 chr6 180267954 180267992 -2147250 + AT_rich Low_complexity Low_complexity 1 38 0 330 336 98 55 chr6 180268763 180269129 -2146113 - L1MEd LINE L1 -4937 1182 801 27 0 0 0 chr6 180271153 180271180 -2144062 + AT_rich Low_complexity Low_complexity 1 27 0 1764 209 14 22 chr6 180271687 180272055 -2143187 + MLT1A1 LTR MaLR 1 365 0 365 233 19 6 chr6 180272656 180272815 -2142427 + (CAT)n Simple_repeat Simple_repeat 2 162 0 199 298 137 32 chr6 180273283 180273407 -2141835 - MIR SINE MIR -119 143 7 466 296 35 0 chr6 180274283 180274452 -2140790 - L1MB2 LINE L1 -318 5853 5679 1111 249 35 0 chr6 180274461 180274750 -2140492 - L1M3 LINE L1 -422 5758 5460 1067 246 59 0 chr6 180274748 180275037 -2140205 + L1MB4 LINE L1 5867 6172 -8 * 402 257 20 0 chr6 180277140 180277241 -2138001 + Charlie1 DNA MER1_type 2658 2760 -1 772 207 27 37 chr6 180277246 180277434 -2137808 + MER5A DNA MER1_type 2 187 -2 440 179 21 21 chr6 180277498 180277593 -2137649 - MER5A DNA MER1_type -86 103 9 2100 122 162 11 chr6 180277921 180278291 -2136951 - MSTA LTR MaLR -2 426 1 261 137 53 32 chr6 180279214 180279309 -2135933 + CT-rich Low_complexity Low_complexity 6 102 0 256 286 0 11 chr6 180279352 180279443 -2135799 - MLT1I LTR MaLR -2 407 318 313 315 46 8 chr6 180280369 180280499 -2134743 - MIR3 SINE MIR -24 184 50 * 556 242 25 19 chr6 180280468 180280625 -2134617 - MER5A DNA MER1_type -29 160 3 249 270 63 82 chr6 180281538 180281697 -2133545 - MLT1I LTR MaLR -365 190 35 193 259 74 0 chr6 180283431 180283485 -2131757 - L2 LINE L2 -1 3271 3214 226 333 84 18 chr6 180284307 180284532 -2130710 - L2 LINE L2 -1270 2044 1805 252 279 76 0 chr6 180284832 180284911 -2130331 + L2 LINE L2 3212 3296 -17 280 82 0 0 chr6 180286129 180286178 -2129064 + Alu SINE Alu 254 302 0 2300 96 3 0 chr6 180288044 180288371 -2126871 + AluSp SINE Alu 1 313 0 1633 186 0 10 chr6 180289655 180289946 -2125296 + AluJo SINE Alu 1 288 -24 893 225 169 7 chr6 180290214 180290498 -2124744 + MER2 DNA MER2_type 7 336 -9 212 329 116 34 chr6 180290867 180291013 -2124229 - MIR SINE MIR -2 260 103 467 287 7 0 chr6 180291057 180291193 -2124049 + MER58A DNA MER1_type 1 137 0 319 155 17 0 chr6 180291193 180291236 -2124006 + MER58A DNA MER1_type 181 224 0 319 233 27 0 chr6 180291684 180291757 -2123485 + MLT2D LTR ERVL 26 100 -364 1249 169 109 8 chr6 180291770 180292018 -2123224 + AluJo SINE Alu 1 273 -39 1257 90 0 0 chr6 180292019 180292196 -2123046 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 294 29 0 0 chr6 180292200 180292235 -2123007 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 1194 169 44 25 chr6 180292235 180292507 -2122735 + MLT2D LTR ERVL 107 481 -39 404 223 35 22 chr6 180296187 180296506 -2118736 + (TG)n Simple_repeat Simple_repeat 1 323 0 308 224 41 0 chr6 180296527 180296697 -2118545 + (TG)n Simple_repeat Simple_repeat 2 178 0 464 254 47 6 chr6 180296751 180296920 -2118322 + (TG)n Simple_repeat Simple_repeat 2 177 0 2455 102 44 11 chr6 180298202 180298563 -2116679 + THE1C LTR MaLR 1 373 -2 180 0 0 0 chr6 180302108 180302128 -2113114 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 242 330 0 0 chr6 180302633 180302751 -2112491 + (TG)n Simple_repeat Simple_repeat 2 119 0 336 321 9 0 chr6 180303667 180303776 -2111466 + L1MB7 LINE L1 6066 6175 -9 274 313 0 0 chr6 180304419 180304486 -2110756 - MIR SINE MIR -112 150 84 1717 170 7 7 chr6 180308898 180309203 -2106039 - AluSx SINE Alu -15 297 4 357 281 133 46 chr6 180311802 180312328 -2102914 + L2 LINE L2 2405 2976 -338 262 299 36 29 chr6 180312457 180312594 -2102648 + L2 LINE L2 3165 3302 -11 211 185 246 0 chr6 180313457 180313522 -2101720 - MER5A DNA MER1_type -103 86 6 717 143 91 17 chr6 180314166 180314341 -2100901 + MLT1A1 LTR MaLR 1 188 -177 * 1148 207 55 4 chr6 180314335 180314610 -2100632 + MLT1A1 LTR MaLR 77 365 0 2345 114 19 6 chr6 180314726 180315085 -2100157 - THE1B LTR MaLR 0 364 1 663 164 0 17 chr6 180315935 180316051 -2099191 - L1MC1 LINE L1 0 6333 6220 415 290 12 25 chr6 180316152 180316314 -2098928 - L1MC1 LINE L1 -72 6261 6102 205 262 0 16 chr6 180316434 180316495 -2098747 - MIR SINE MIR -112 150 91 981 101 14 22 chr6 180316495 180316657 -2098585 + AluSq SINE Alu 149 309 0 23 0 0 0 chr6 180317759 180317782 -2097460 + GC_rich Low_complexity Low_complexity 1 23 0 364 354 0 0 chr6 180322852 180322999 -2092243 + G-rich Low_complexity Low_complexity 1 147 0 22 35 0 0 chr6 180323422 180323451 -2091791 + GC_rich Low_complexity Low_complexity 1 29 0 319 217 98 28 chr6 180324048 180324191 -2091051 - L2 LINE L2 -273 3040 2888 369 277 51 22 chr6 180324380 180324517 -2090725 + L2 LINE L2 3117 3257 -56 328 303 117 31 chr6 180325732 180325894 -2089348 + L1ME4a LINE L1 5946 6121 0 3004 255 29 4 chr6 180326360 180327159 -2088083 + L1MC2 LINE L1 5514 6332 -12 367 103 4 51 chr6 180327239 180327467 -2087775 + AluJo SINE Alu 1 264 -38 2439 143 35 93 chr6 180327467 180328005 -2087237 - MER84 LTR ERV1 0 507 1 367 103 4 51 chr6 180328005 180328043 -2087199 + AluJo SINE Alu 264 302 0 2436 95 0 0 chr6 180328841 180329145 -2086097 + AluSx SINE Alu 1 304 -8 204 125 0 0 chr6 180330093 180330125 -2085117 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 1397 245 52 16 chr6 180330470 180330915 -2084327 - MLT1C LTR MaLR -3 464 4 545 229 15 23 chr6 180332351 180332482 -2082760 + MLT1B LTR MaLR 38 167 -223 257 368 9 0 chr6 180332538 180332644 -2082598 + (CA)n Simple_repeat Simple_repeat 1 107 0 341 359 86 20 chr6 180332673 180333164 -2082078 + L1ME4a LINE L1 3723 4245 -1901 311 321 253 17 chr6 180333621 180333917 -2081325 + L1ME4a LINE L1 5695 6060 -61 1426 233 72 17 chr6 180334838 180335310 -2079932 + Zaphod DNA AcHobo 3466 3963 -68 1896 167 20 0 chr6 180335634 180335940 -2079302 - AluSx SINE Alu 0 312 1 761 246 42 31 chr6 180336178 180336466 -2078776 + MER90 LTR ERV1 313 603 -11 408 254 47 64 chr6 180336509 180336745 -2078497 - L1MC5 LINE L1 -438 7523 7292 324 249 35 64 chr6 180336937 180337110 -2078132 - L1MC5 LINE L1 -786 7175 7008 235 238 57 67 chr6 180337115 180337220 -2078022 + L2 LINE L2 3160 3263 -50 15963 146 37 16 chr6 180337384 180344093 -2071149 - L1MA2 LINE L1 0 7723 873 898 145 0 0 chr6 180344106 180344237 -2071005 - AluSg/x SINE Alu 0 312 182 2227 195 45 68 chr6 180345285 180345860 -2069382 - Tigger4(Zombi) DNA MER2_type 0 2731 2170 795 170 52 0 chr6 180345870 180346023 -2069219 - Tigger4(Zombi) DNA MER2_type -2570 161 1 1733 90 0 49 chr6 180346191 180346436 -2068806 + AluSg SINE Alu 63 295 -15 436 256 22 36 chr6 180347104 180347241 -2068001 + MIR SINE MIR 69 203 -59 535 172 139 16 chr6 180347758 180347880 -2067362 - L1MB1 LINE L1 -521 5647 5511 * 1449 287 37 6 chr6 180347871 180348379 -2066863 + L1MB1 LINE L1 5644 6167 -1 456 283 102 44 chr6 180348843 180349136 -2066106 + L1MC/D LINE L1 4963 5272 -874 306 350 121 0 chr6 180349157 180349437 -2065805 + L1MC/D LINE L1 5313 5626 -2182 2056 158 20 27 chr6 180351323 180351347 -2063895 - MER57A LTR ERV1 0 403 380 1877 153 3 26 chr6 180351347 180351655 -2063587 + AluJb SINE Alu 1 301 -11 2056 158 20 27 chr6 180351655 180352036 -2063206 - MER57A LTR ERV1 -23 380 1 314 246 14 0 chr6 180353873 180353942 -2061300 - MER63 DNA MER1_type -88 748 679 192 313 61 10 chr6 180354565 180354664 -2060578 + MIR SINE MIR 40 143 -65 595 189 7 7 chr6 180356510 180356658 -2058584 + (CA)n Simple_repeat Simple_repeat 2 149 0 2181 131 3 0 chr6 180356662 180356960 -2058282 - AluSx SINE Alu -13 299 1 264 310 105 15 chr6 180357049 180357179 -2058063 + MIR SINE MIR 39 182 -80 454 265 95 7 chr6 180357419 180357566 -2057676 + MIR SINE MIR 16 175 -87 450 232 90 30 chr6 180357792 180357999 -2057243 - HsTC2 DNA Tc2 0 1898 1682 390 266 70 16 chr6 180358174 180358386 -2056856 - HsTC2 DNA Tc2 -313 1585 1184 836 120 0 0 chr6 180360354 180360471 -2054771 - AluSq SINE Alu -6 307 191 804 129 0 9 chr6 180360472 180360588 -2054654 - AluSq SINE Alu -197 115 1 207 100 0 0 chr6 180362060 180362090 -2053152 + (ATG)n Simple_repeat Simple_repeat 3 32 0 671 310 40 0 chr6 180362090 180362325 -2052917 - MIR SINE MIR -4 258 15 351 257 30 0 chr6 180362362 180362463 -2052779 + L2 LINE L2 3164 3267 -5 1566 184 57 65 chr6 180363887 180364274 -2050968 + MLT1B LTR MaLR 1 384 -6 1555 129 123 21 chr6 180364548 180364888 -2050354 - THE1C LTR MaLR 0 375 1 274 320 21 0 chr6 180365908 180366005 -2049237 + L2 LINE L2 3193 3291 -22 2478 129 29 23 chr6 180367742 180368184 -2047058 + MER65A LTR ERV1 1 445 0 6790 203 58 90 chr6 180368243 180368974 -2046268 + MER65A-int LTR ERV1 61 814 -4057 2214 113 0 0 chr6 180368974 180369266 -2045976 - AluSg SINE Alu -13 297 6 6790 203 58 90 chr6 180369266 180371574 -2043668 + MER65A-int LTR ERV1 814 2505 -2366 890 116 96 0 chr6 180371606 180371752 -2043490 - L1PA14 LINE L1 0 6161 6002 262 130 46 145 chr6 180371790 180371921 -2043321 + MER65A-int LTR ERV1 2318 4184 -3936 706 236 55 14 chr6 180372158 180372378 -2042864 + MER65A-int LTR ERV1 3500 3728 -2870 2131 196 95 85 chr6 180372449 180373784 -2041458 + MER65A-int LTR ERV1 3727 5115 -1216 300 185 17 10 chr6 180373802 180373873 -2041369 + MER65A-int LTR ERV1 4030 5265 -1025 1500 245 100 9 chr6 180373939 180374359 -2040883 + MER65A-int LTR ERV1 3605 4062 -809 * 1921 222 30 32 chr6 180374355 180374828 -2040414 + MER65A-int LTR ERV1 4398 4869 -2 1914 172 76 14 chr6 180374828 180375247 -2039995 + MER65A LTR ERV1 1 445 0 182 167 0 24 chr6 180375610 180375652 -2039590 + CT-rich Low_complexity Low_complexity 3 43 0 2239 115 7 0 chr6 180375654 180375950 -2039292 - AluSx SINE Alu -14 298 1 260 263 53 0 chr6 180375984 180376041 -2039201 + MER65-int LTR ERV1 3907 3966 -905 308 289 149 34 chr6 180376161 180376369 -2038873 + MIR SINE MIR 31 262 0 224 326 35 89 chr6 180376473 180376755 -2038487 + L2 LINE L2 2243 2509 -805 2709 157 21 122 chr6 180377248 180377960 -2037282 - MER39B LTR ERV1 -13 640 1 373 277 64 43 chr6 180378774 180378915 -2036327 - MIR SINE MIR -62 200 57 492 150 12 0 chr6 180379338 180379418 -2035824 + MER72 LTR ERV1 1 81 -641 1325 276 50 10 chr6 180379550 180379966 -2035276 + MER49 LTR ERV1 491 923 0 290 325 61 25 chr6 180380006 180380169 -2035073 - MIR SINE MIR -51 211 43 477 205 36 36 chr6 180380455 180380611 -2034631 - LTR45 LTR ERV1 -7 518 324 2212 122 0 3 chr6 180382134 180382428 -2032814 - AluSx SINE Alu -19 293 1 318 216 29 39 chr6 180382835 180382937 -2032305 - LTR45 LTR ERV1 0 525 425 1973 150 27 24 chr6 180383069 180383442 -2031800 - THE1C LTR MaLR -1 374 1 9843 115 55 3 chr6 180383442 180384943 -2030299 - THE1C-int LTR MaLR 0 1580 1 1930 128 48 48 chr6 180384943 180385318 -2029924 - THE1C LTR MaLR 0 375 1 21 82 0 0 chr6 180385710 180385759 -2029483 + AT_rich Low_complexity Low_complexity 1 49 0 182 304 14 14 chr6 180385882 180385951 -2029291 - L2 LINE L2 -4 3268 3200 180 0 0 0 chr6 180389883 180389903 -2025339 + (TTG)n Simple_repeat Simple_repeat 2 21 0 336 216 44 0 chr6 180392065 180392196 -2023046 - MLT1A1 LTR MaLR -6 390 249 330 211 0 40 chr6 180395904 180395980 -2019262 - MIR SINE MIR -76 186 114 848 230 16 0 chr6 180397043 180397234 -2018008 + L1M3 LINE L1 5580 5773 -410 3257 142 38 54 chr6 180397312 180397373 -2017869 + MER4D LTR ERV1 285 345 -558 2040 153 0 3 chr6 180397373 180397674 -2017568 - AluSx SINE Alu -12 300 1 3257 142 38 54 chr6 180397674 180398241 -2017001 + MER4D LTR ERV1 345 903 0 1141 229 118 76 chr6 180398564 180399133 -2016109 - MER4A LTR ERV1 -2 662 70 297 339 97 36 chr6 180399667 180399915 -2015327 + MLT1K LTR MaLR 11 273 -315 471 257 18 0 chr6 180400050 180400159 -2015083 - MLT1C LTR MaLR 0 467 357 243 228 76 0 chr6 180400191 180400270 -2014972 - L1 LINE L1 -3212 2934 2850 * 2475 134 29 11 chr6 180400265 180400742 -2014500 - L1MA9 LINE L1 -1406 4740 4255 3939 148 22 32 chr6 180400742 180401992 -2013250 + L1MA9 LINE L1 4747 5999 -313 266 310 20 0 chr6 180402291 180402391 -2012851 + (CA)n Simple_repeat Simple_repeat 1 102 0 388 309 36 24 chr6 180403005 180403170 -2012072 + MIR SINE MIR 14 180 -82 2437 67 30 0 chr6 180403333 180403632 -2011610 - AluY SINE Alu -3 308 1 524 264 70 25 chr6 180405016 180405217 -2010025 + MLT1D LTR MaLR 1 210 -295 2470 192 43 11 chr6 180406438 180406969 -2008273 + LTR9B LTR ERV1 1 548 -96 192 143 0 0 chr6 180407043 180407085 -2008157 + (TC)n Simple_repeat Simple_repeat 1 42 0 312 203 25 13 chr6 180407705 180407863 -2007379 + (TG)n Simple_repeat Simple_repeat 2 161 0 404 229 0 31 chr6 180407874 180408168 -2007074 + (TG)n Simple_repeat Simple_repeat 1 284 0 902 229 57 57 chr6 180408708 180409023 -2006219 + MLT1B LTR MaLR 23 337 -53 1206 144 6 0 chr6 180409024 180409197 -2006045 - AluJb SINE Alu -138 174 1 587 216 44 12 chr6 180409197 180409394 -2005848 - L1MB3 LINE L1 -119 6062 5857 2534 67 0 6 chr6 180411385 180411697 -2003545 + AluY SINE Alu 1 310 -1 202 146 24 0 chr6 180412766 180412807 -2002435 + CT-rich Low_complexity Low_complexity 3 44 0 333 284 90 40 chr6 180414066 180414267 -2000975 + L2 LINE L2 3103 3313 0 334 282 26 0 chr6 180414307 180414424 -2000818 - MLT1J LTR MaLR -4 507 388 263 280 65 0 chr6 180414481 180414588 -2000654 - MLT1J LTR MaLR -311 200 87 257 238 67 9 chr6 180418198 180418303 -1996939 + MER69 DNA AcHobo 1749 1859 -667 * 893 254 122 13 chr6 180418275 180418668 -1996574 - MER69 DNA AcHobo -187 2339 1904 1023 276 47 16 chr6 180418825 180419209 -1996033 - MER69 DNA AcHobo -1641 885 490 512 299 128 7 chr6 180419239 180419513 -1995729 + MER115 DNA AcHobo 2 308 -385 718 264 67 10 chr6 180421508 180421716 -1993526 - MLT1K LTR MaLR -10 578 359 247 338 0 0 chr6 180422771 180422848 -1992394 + (TG)n Simple_repeat Simple_repeat 1 77 0 1053 134 0 0 chr6 180423550 180423722 -1991520 + (TCC)n Simple_repeat Simple_repeat 3 174 0 205 270 21 28 chr6 180424900 180425014 -1990228 - MIR SINE MIR -94 114 11 604 271 26 0 chr6 180425414 180425569 -1989673 + MER3 DNA MER1_type 50 208 -1 499 301 11 38 chr6 180427411 180427594 -1987648 + MER5B DNA MER1_type 1 178 0 2402 201 58 36 chr6 180427649 180428320 -1986922 - Charlie1a DNA MER1_type 0 1455 770 1145 225 127 30 chr6 180428326 180428753 -1986489 + MER89 LTR ERV1 2 469 -90 2156 243 80 42 chr6 180428890 180429632 -1985610 - Charlie1a DNA MER1_type -654 801 32 256 246 93 0 chr6 180430556 180430674 -1984568 - Charlie1 DNA MER1_type -60 2701 2573 737 175 8 0 chr6 180434643 180434769 -1980473 - MER72 LTR ERV1 -448 274 148 282 303 107 50 chr6 180441735 180441996 -1973246 - L2 LINE L2 -38 3234 2959 1150 240 75 0 chr6 180442620 180442953 -1972289 - MER89 LTR ERV1 -24 535 178 403 277 140 24 chr6 180443028 180443364 -1971878 - MER115 DNA AcHobo -293 400 26 202 227 0 0 chr6 180444398 180444442 -1970800 + A-rich Low_complexity Low_complexity 2 45 0 328 209 23 23 chr6 180444577 180444754 -1970488 + CT-rich Low_complexity Low_complexity 2 178 0 4391 82 14 3 chr6 180449726 180450357 -1964885 + L1P3 LINE L1 1090 1727 -4734 276 196 11 33 chr6 180452415 180452507 -1962735 + CT-rich Low_complexity Low_complexity 1 90 0 325 236 28 0 chr6 180452508 180452580 -1962662 + L1ME4a LINE L1 6046 6119 -2 385 210 254 0 chr6 180452968 180453106 -1962136 - MER5A DNA MER1_type -6 183 11 1452 179 10 29 chr6 180453682 180453720 -1961522 - MER6A DNA MER2_type -260 605 568 3332 105 68 36 chr6 180453720 180453761 -1961481 - LTR19B LTR ERV1 0 580 542 2898 3 0 0 chr6 180453761 180454063 -1961179 - AluYb8 SINE Alu -16 302 1 3332 105 68 36 chr6 180454063 180454583 -1960659 - LTR19B LTR ERV1 -38 542 1 1452 179 10 29 chr6 180454583 180454851 -1960391 - MER6A DNA MER2_type -297 568 305 648 161 238 0 chr6 180454849 180454992 -1960250 - MER6A DNA MER2_type -428 177 1 * 263 272 65 0 chr6 180455620 180455712 -1959530 - Alu SINE Alu 0 300 203 * 379 200 19 48 chr6 180455683 180455788 -1959454 + MER6A DNA MER2_type 262 363 -242 1335 271 81 32 chr6 180455807 180456302 -1958940 + HERVL-D LTR ERVL 5136 5654 0 678 220 79 6 chr6 180456302 180456331 -1958911 + Ricksha DNA DNA 333 374 -1672 998 226 63 50 chr6 180456331 180456650 -1958592 + MLT2D LTR ERVL 83 405 -9 3862 166 45 0 chr6 180457001 180457692 -1957550 + MER72 LTR ERV1 1 722 0 578 201 0 6 chr6 180457880 180458059 -1957183 + CT-rich Low_complexity Low_complexity 2 179 0 932 133 5 2 chr6 180458077 180458317 -1956925 + (TC)n Simple_repeat Simple_repeat 1 420 0 636 175 6 11 chr6 180458319 180458496 -1956746 + CT-rich Low_complexity Low_complexity 2 177 0 858 144 0 0 chr6 180458499 180458679 -1956563 + (TC)n Simple_repeat Simple_repeat 1 180 0 2273 69 10 49 chr6 180459675 180459980 -1955262 - AluY SINE Alu -18 293 1 1056 122 6 0 chr6 180460416 180460580 -1954662 + L1PA10 LINE L1 6003 6167 -1 203 148 0 93 chr6 180460605 180460659 -1954583 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 2313 100 7 0 chr6 180461032 180461331 -1953911 - AluSx SINE Alu -11 301 1 2368 102 0 13 chr6 180463294 180463609 -1951633 + AluSx SINE Alu 1 311 -1 2359 105 0 3 chr6 180463618 180463922 -1951320 + AluSx SINE Alu 1 303 -9 26 30 0 0 chr6 180465057 180465090 -1950152 + AT_rich Low_complexity Low_complexity 1 33 0 297 239 73 0 chr6 180467087 180467196 -1948046 + REP3 LTR ERV 2 118 -444 1402 223 152 38 chr6 180467348 180467896 -1947346 + LTR36 LTR ERV1 2 611 0 574 317 62 35 chr6 180468344 180468649 -1946593 + L1M3 LINE L1 4784 5079 -1101 4528 83 9 2 chr6 180468649 180469284 -1945958 - L1PA10 LINE L1 -6 6162 5523 574 317 62 35 chr6 180469284 180469685 -1945557 + L1PA10 LINE L1 5079 5502 -678 272 116 71 32 chr6 180471143 180471298 -1943944 + (CA)n Simple_repeat Simple_repeat 1 161 0 263 202 35 44 chr6 180471304 180471418 -1943824 + (CACAC)n Simple_repeat Simple_repeat 1 113 0 318 135 59 29 chr6 180471437 180471607 -1943635 + (CA)n Simple_repeat Simple_repeat 1 175 0 2515 63 7 0 chr6 180472265 180472566 -1942676 - AluSp SINE Alu -10 303 1 231 114 0 0 chr6 180476024 180476059 -1939183 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 223 226 147 10 chr6 180476454 180476556 -1938686 - MIR SINE MIR -124 138 23 431 316 107 28 chr6 180478596 180478960 -1936282 + L2 LINE L2 1960 2352 -962 505 300 33 41 chr6 180479276 180479546 -1935696 + L2 LINE L2 2546 2813 -501 657 215 94 117 chr6 180483448 180483572 -1931670 + MLT1C LTR MaLR 6 131 -336 2305 98 0 0 chr6 180483572 180483857 -1931385 + AluSx SINE Alu 11 295 -17 657 215 94 117 chr6 180483857 180484058 -1931184 + MLT1C LTR MaLR 131 321 -146 714 195 96 102 chr6 180484058 180484422 -1930820 - MLT1A1 LTR MaLR 0 365 4 657 215 94 117 chr6 180484422 180484532 -1930710 + MLT1C LTR MaLR 321 432 -35 698 296 104 13 chr6 180485638 180485955 -1929287 + L2 LINE L2 2309 2654 -660 1505 178 53 75 chr6 180486067 180486466 -1928776 + MLT1B LTR MaLR 1 390 0 419 207 201 37 chr6 180490605 180490772 -1924470 + MLT1H LTR MaLR 396 549 0 335 23 23 0 chr6 180491428 180491472 -1923770 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 707 343 108 34 chr6 180492201 180493261 -1921981 + L1ME LINE L1 1930 3072 -3143 267 335 11 16 chr6 180493286 180493477 -1921765 + L1ME LINE L1 3157 3346 -2869 961 339 75 21 chr6 180493477 180494052 -1921190 + L1ME LINE L1 3265 3870 -2345 234 333 33 0 chr6 180494219 180494339 -1920903 + L1ME LINE L1 3855 3978 -2237 1501 288 71 6 chr6 180494874 180495408 -1919834 + MER45B DNA AcHobo 61 629 -411 517 54 0 0 chr6 180495451 180495525 -1919717 - L1PA5 LINE L1 -126 6028 5955 267 239 0 0 chr6 180495550 180495617 -1919625 + (TA)n Simple_repeat Simple_repeat 1 67 0 1041 260 35 40 chr6 180495700 180496046 -1919196 + MER45B DNA AcHobo 675 1018 -22 327 326 169 0 chr6 180496392 180496576 -1918666 + L1ME LINE L1 4303 4517 -1698 240 306 82 36 chr6 180496579 180496798 -1918444 + L1ME LINE L1 4545 4773 -1442 377 302 52 22 chr6 180497940 180498195 -1917047 + L1ME LINE L1 5342 5616 -617 1609 254 44 29 chr6 180498195 180498672 -1916570 + MLT1D LTR MaLR 1 484 -21 274 350 6 85 chr6 180499766 180499943 -1915299 + MIR SINE MIR 29 191 -71 21 36 0 0 chr6 180500493 180500521 -1914721 + AT_rich Low_complexity Low_complexity 1 28 0 208 170 19 38 chr6 180501603 180501656 -1913586 + A-rich Low_complexity Low_complexity 3 54 0 2212 116 7 0 chr6 180501710 180502048 -1913194 + AluY SINE Alu 1 311 0 1063 244 110 30 chr6 180502343 180502830 -1912412 + MER89 LTR ERV1 1 559 0 1427 167 71 80 chr6 180504256 180504692 -1910550 + MSTB1 LTR MaLR 1 432 0 206 146 24 0 chr6 180504942 180504983 -1910259 + (ATAGG)n Simple_repeat Simple_repeat 3 44 0 24 32 0 0 chr6 180505001 180505032 -1910210 + AT_rich Low_complexity Low_complexity 1 31 0 201 154 0 0 chr6 180506045 180506084 -1909158 + GA-rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr6 180506147 180506167 -1909075 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 2187 109 0 30 chr6 180507453 180507755 -1907487 - AluSg SINE Alu -17 293 1 1002 122 0 0 chr6 180512506 180512686 -1902556 + (CA)n Simple_repeat Simple_repeat 1 180 0 1912 132 0 3 chr6 180513202 180513489 -1901753 - AluJb SINE Alu -13 299 14 210 143 0 0 chr6 180513596 180513631 -1901611 + (TG)n Simple_repeat Simple_repeat 2 36 0 2249 66 11 0 chr6 180514062 180514348 -1900894 - AluY SINE Alu -22 289 1 199 276 130 49 chr6 180515368 180515491 -1899751 - MER5A DNA MER1_type -10 179 47 313 262 49 49 chr6 180515857 180515979 -1899263 + L1MEc LINE L1 2096 2217 -4179 556 224 73 55 chr6 180566208 180566427 -1848815 + MLT1F1 LTR MaLR 69 291 -276 408 195 23 0 chr6 180566533 180566620 -1848622 + MLT1F1 LTR MaLR 479 567 0 1839 121 0 42 chr6 180566924 180567213 -1848029 + AluSx SINE Alu 35 311 -1 228 315 0 33 chr6 180567910 180568091 -1847151 + CT-rich Low_complexity Low_complexity 4 178 0 214 310 0 40 chr6 180568201 180568375 -1846867 + CT-rich Low_complexity Low_complexity 3 169 0 321 327 45 5 chr6 180568677 180568876 -1846366 - HAL1 LINE L1 -1605 902 696 249 240 10 10 chr6 180568932 180569032 -1846210 - HAL1 LINE L1 -2314 193 94 263 204 9 80 chr6 180569303 180569462 -1845780 + HsTC2 DNA Tc2 5 1868 -30 1055 25 0 0 chr6 180569924 180570042 -1845200 - AluY SINE Alu -10 301 184 460 298 144 22 chr6 180572021 180572202 -1843040 + MIR SINE MIR 8 210 -52 5409 120 23 38 chr6 180572234 180573695 -1841547 + L1PA16 LINE L1 4703 6157 -9 2674 52 0 0 chr6 180573777 180574083 -1841159 + AluY SINE Alu 1 306 -5 21 36 0 0 chr6 180575090 180575118 -1840124 + AT_rich Low_complexity Low_complexity 1 28 0 227 263 35 0 chr6 180575701 180575758 -1839484 + MIR SINE MIR 92 150 -112 219 247 0 0 chr6 180577131 180577204 -1838038 + (TG)n Simple_repeat Simple_repeat 1 73 0 192 125 0 0 chr6 180578894 180578926 -1836316 + (TTC)n Simple_repeat Simple_repeat 2 33 0 458 277 71 7 chr6 180580004 180580159 -1835083 + MIR SINE MIR 49 213 -49 209 271 165 0 chr6 180581249 180581334 -1833908 - MIR SINE MIR -102 160 62 211 326 33 11 chr6 180581448 180581540 -1833702 + L2 LINE L2 3177 3270 -2 2315 123 0 0 chr6 180582268 180582576 -1832666 + AluSx SINE Alu 1 308 -4 1556 148 0 16 chr6 180583257 180583501 -1831741 - AluJb SINE Alu -15 297 58 334 248 0 28 chr6 180584491 180584600 -1830642 + G-rich Low_complexity Low_complexity 1 106 0 313 218 0 20 chr6 180584606 180584753 -1830489 + GA-rich Low_complexity Low_complexity 1 144 0 269 268 0 0 chr6 180584763 180584845 -1830397 + (ATG)n Simple_repeat Simple_repeat 1 82 0 21 0 0 0 chr6 180585636 180585657 -1829585 + AT_rich Low_complexity Low_complexity 1 21 0 194 138 69 0 chr6 180586234 180586292 -1828950 + GA-rich Low_complexity Low_complexity 3 64 0 187 341 130 16 chr6 180587394 180587517 -1827725 - L3 LINE CR1 -916 661 525 471 73 0 0 chr6 180587760 180587828 -1827414 + (TC)n Simple_repeat Simple_repeat 2 69 0 309 338 68 63 chr6 180589659 180590100 -1825142 - HAL1 LINE L1 -1185 1322 880 427 276 6 17 chr6 180590100 180590281 -1824961 + CT-rich Low_complexity Low_complexity 2 180 0 549 244 31 44 chr6 180595192 180595352 -1819890 - MIR SINE MIR -21 241 84 318 284 136 72 chr6 180595728 180596073 -1819169 - L1M2 LINE L1 -5626 1223 857 2062 125 82 20 chr6 180597207 180597550 -1817692 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr6 180598202 180598226 -1817016 + AT_rich Low_complexity Low_complexity 1 24 0 1060 147 0 0 chr6 180600096 180600253 -1814989 + AluJb SINE Alu 1 157 -155 226 274 181 14 chr6 180600683 180600898 -1814344 - L1ME3A LINE L1 -14 6156 5906 180 217 83 33 chr6 180601072 180601132 -1814110 - L2 LINE L2 -1889 1425 1363 1522 200 77 3 chr6 180601494 180601834 -1813408 + MLT2D LTR ERVL 1 365 -49 186 103 0 0 chr6 180601859 180601888 -1813354 + (CA)n Simple_repeat Simple_repeat 2 30 0 337 241 5 9 chr6 180604015 180604236 -1811006 + (TG)n Simple_repeat Simple_repeat 1 220 0 439 236 6 6 chr6 180604268 180604446 -1810796 + (TG)n Simple_repeat Simple_repeat 2 179 0 508 226 0 38 chr6 180604460 180604964 -1810278 + (TG)n Simple_repeat Simple_repeat 1 485 0 4661 57 10 12 chr6 180606821 180607413 -1807829 + LTR10C LTR ERV1 1 591 0 616 232 61 6 chr6 180608150 180608314 -1806928 - MER5B DNA MER1_type -5 173 1 2241 101 0 3 chr6 180610107 180610405 -1804837 + AluSx SINE Alu 1 297 -15 525 261 39 6 chr6 180612451 180612631 -1802611 - MLT1C LTR MaLR -280 187 2 237 342 5 38 chr6 180613104 180613288 -1801954 + (CA)n Simple_repeat Simple_repeat 1 178 0 244 329 123 7 chr6 180615888 180616043 -1799199 + MIR SINE MIR 16 188 -74 1766 168 17 0 chr6 180616406 180616697 -1798545 + AluJo SINE Alu 1 296 -16 247 180 60 90 chr6 180619354 180619521 -1795721 + (CCCCAG)n Simple_repeat Simple_repeat 4 165 0 257 205 82 53 chr6 180620085 180620256 -1794986 + (CCCCAG)n Simple_repeat Simple_repeat 4 179 0 211 219 83 53 chr6 180620615 180620784 -1794458 + (CCCCAG)n Simple_repeat Simple_repeat 4 177 0 307 193 82 53 chr6 180620833 180621004 -1794238 + (CCCCAG)n Simple_repeat Simple_repeat 4 179 0 296 181 82 53 chr6 180621099 180621270 -1793972 + (CCCCAG)n Simple_repeat Simple_repeat 4 179 0 248 195 78 47 chr6 180621491 180621619 -1793623 + (CCCCAG)n Simple_repeat Simple_repeat 4 135 0 1293 219 75 44 chr6 180621648 180622104 -1793138 - MLT1D LTR MaLR -1 504 35 298 316 49 73 chr6 180623172 180623385 -1791857 - MIR SINE MIR -26 236 40 651 233 0 0 chr6 180623778 180623954 -1791288 + (TG)n Simple_repeat Simple_repeat 1 176 0 651 270 0 0 chr6 180623988 180624328 -1790914 + (TG)n Simple_repeat Simple_repeat 1 340 0 831 201 0 0 chr6 180624353 180624532 -1790710 + (TG)n Simple_repeat Simple_repeat 1 179 0 202 312 13 39 chr6 180630603 180630680 -1784562 + MIR SINE MIR 118 192 -70 1766 97 34 22 chr6 180633558 180633827 -1781415 + AluSx SINE Alu 35 306 -6 199 287 99 92 chr6 180634823 180635095 -1780147 + L2 LINE L2 2504 2777 -537 572 246 70 7 chr6 180635121 180635476 -1779766 + MLT1C LTR MaLR 23 427 -40 627 284 27 79 chr6 180636730 180637096 -1778146 - MLT1B LTR MaLR -1 389 43 307 344 34 71 chr6 180639040 180639334 -1775908 + HAL1 LINE L1 2 284 -2223 1266 329 77 78 chr6 180639452 180640115 -1775127 + HAL1 LINE L1 811 1474 -1033 2168 124 0 0 chr6 180640115 180640414 -1774828 + AluSq SINE Alu 1 299 -14 1266 329 77 78 chr6 180640414 180640800 -1774442 + HAL1 LINE L1 1474 1859 -648 1024 317 132 2 chr6 180640989 180641557 -1773685 + L2 LINE L2 1545 2186 -1128 1639 209 90 72 chr6 180641557 180642068 -1773174 - MLT2B1 LTR ERVL 0 520 1 1152 299 4 141 chr6 180642069 180642564 -1772678 - ERVL-B1 LTR ERVL -9 5755 5329 10274 250 78 76 chr6 180642573 180644843 -1770399 - ERVL-B1 LTR ERVL -400 5364 3098 2130 135 0 0 chr6 180644843 180645140 -1770102 + AluSx SINE Alu 1 297 -15 10274 250 78 76 chr6 180645140 180648209 -1767033 - ERVL-B1 LTR ERVL -2666 3098 18 299 250 13 0 chr6 180648210 180648286 -1766956 - MLT2B2 LTR ERVL -74 441 365 771 285 86 36 chr6 180648298 180648773 -1766469 + L2 LINE L2 2560 3051 -262 400 338 38 0 chr6 180649626 180649836 -1765406 + L1MC4a LINE L1 5728 5945 -1863 2225 82 3 20 chr6 180649845 180650149 -1765093 + AluSp SINE Alu 1 299 -14 442 299 233 19 chr6 180653184 180653558 -1761684 - HAL1 LINE L1 -1841 666 213 226 326 118 0 chr6 180653560 180653704 -1761538 - HAL1 LINE L1 -2334 173 13 509 120 0 93 chr6 180654452 180654560 -1760682 - L1MB2 LINE L1 -2 6169 6072 193 299 15 15 chr6 180655679 180655746 -1759496 + L2 LINE L2 2989 3055 -217 196 383 150 0 chr6 180656633 180656753 -1758489 - MIR SINE MIR -6 256 119 282 370 121 25 chr6 180659015 180659421 -1755821 + L2 LINE L2 2208 2652 -662 392 168 106 44 chr6 180659600 180659713 -1755529 + MER63 DNA MER1_type 1 746 -316 288 268 28 0 chr6 180659711 180659782 -1755460 + MER63 DNA MER1_type 980 1052 -8 * 297 29 0 0 chr6 180660131 180660165 -1755077 + U2 snRNA snRNA 1 34 -154 290 245 101 58 chr6 180660744 180660883 -1754359 + L2 LINE L2 2939 3083 -189 233 273 0 0 chr6 180661253 180661308 -1753934 - MER63 DNA MER1_type -26 1034 980 586 156 0 10 chr6 180661346 180661442 -1753800 - FLAM_C SINE Alu -13 130 36 203 282 118 45 chr6 180661534 180661644 -1753598 - L2 LINE L2 -1 3312 3195 5679 159 43 8 chr6 180661930 180663741 -1751501 - L1MA9 LINE L1 0 6312 4446 1753 156 0 33 chr6 180663818 180664125 -1751117 - AluJb SINE Alu -15 297 1 39 84 0 0 chr6 180664286 180664381 -1750861 + AT_rich Low_complexity Low_complexity 1 95 0 1521 223 38 116 chr6 180664440 180664497 -1750745 - L1M4 LINE L1 -1017 5129 5069 1604 178 56 66 chr6 180664497 180664891 -1750351 - MLT1B LTR MaLR 0 390 1 1521 223 38 116 chr6 180664891 180664960 -1750282 - L1M4 LINE L1 -1077 5069 4996 857 82 74 44 chr6 180664960 180665095 -1750147 + MER85 DNA T2_type 1 139 0 1521 223 38 116 chr6 180665095 180665789 -1749453 - L1M4 LINE L1 -1150 4996 4372 414 0 0 0 chr6 180668621 180668667 -1746575 + (CA)n Simple_repeat Simple_repeat 2 47 0 814 158 144 77 chr6 180668668 180668795 -1746447 - AluJo SINE Alu -22 290 173 2106 101 0 7 chr6 180668795 180669092 -1746150 - AluY SINE Alu -16 295 1 814 158 144 77 chr6 180669092 180669186 -1746056 - AluJo SINE Alu -139 173 54 265 130 0 37 chr6 180669195 180669249 -1745993 + L1MB7 LINE L1 6119 6170 -14 2045 110 3 0 chr6 180670024 180670316 -1744926 - AluSx SINE Alu -17 295 3 1622 176 3 7 chr6 180671878 180672167 -1743075 + AluSx SINE Alu 1 288 -24 184 29 29 29 chr6 180672170 180672204 -1743038 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 2913 181 88 72 chr6 180672535 180673908 -1741334 - L1MB2 LINE L1 -2 6169 4778 190 347 8 83 chr6 180675360 180675481 -1739761 + MIR SINE MIR 20 131 -77 419 304 115 24 chr6 180675840 180676136 -1739106 + L2 LINE L2 1989 2311 -1003 297 226 16 0 chr6 180676139 180676201 -1739041 + MER91B DNA MER1_type 1 63 -127 282 95 0 0 chr6 180677951 180677993 -1737249 + (TG)n Simple_repeat Simple_repeat 1 42 0 227 222 0 0 chr6 180678108 180678153 -1737089 + (TA)n Simple_repeat Simple_repeat 1 45 0 497 272 31 10 chr6 180678156 180678351 -1736891 - L1ME LINE L1 -349 5772 5574 11186 164 67 31 chr6 180680899 180683353 -1731889 + L1MB3 LINE L1 29 2559 -3823 8234 223 27 31 chr6 180683335 180684665 -1730577 + L1MB3 LINE L1 3178 4512 -1907 * 204 40 0 0 chr6 180684665 180684690 -1730552 + (CA)n Simple_repeat Simple_repeat 2 26 0 8234 223 27 31 chr6 180684690 180686610 -1728632 + L1MB3 LINE L1 4512 6411 -8 2749 206 60 25 chr6 180686607 180687329 -1727913 + L1MB8 LINE L1 5418 6164 -14 * 207 0 0 0 chr6 180688239 180688262 -1726980 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 1941 119 14 7 chr6 180688993 180689287 -1725955 - AluSx SINE Alu -16 296 1 646 251 74 67 chr6 180689544 180689843 -1725399 - MLT1C LTR MaLR -10 457 157 508 238 105 0 chr6 180689843 180690015 -1725227 - MLT1C LTR MaLR 0 467 278 203 333 64 0 chr6 180694253 180694331 -1720911 + MIR SINE MIR 60 142 -66 2041 133 0 0 chr6 180694527 180694821 -1720421 - AluSx SINE Alu -18 294 1 24 32 0 0 chr6 180695120 180695151 -1720091 + AT_rich Low_complexity Low_complexity 1 31 0 630 249 62 21 chr6 180697785 180697978 -1717264 + MER3 DNA MER1_type 2 202 -7 497 278 98 39 chr6 180701265 180701470 -1713772 + MIR SINE MIR 28 244 -18 1776 113 76 7 chr6 180701510 180701801 -1713441 + AluSx SINE Alu 2 312 0 247 317 0 50 chr6 180703700 180703801 -1711441 - MIR SINE MIR -43 219 124 375 41 0 0 chr6 180704211 180704260 -1710982 + (TTTAA)n Simple_repeat Simple_repeat 2 50 0 2020 123 0 0 chr6 180704265 180704550 -1710692 - AluY SINE Alu -26 285 1 2331 90 3 0 chr6 180704550 180704862 -1710380 - AluSq SINE Alu 0 313 1 302 195 49 49 chr6 180705048 180705130 -1710112 - MIR SINE MIR -71 191 110 2767 115 42 2 chr6 180705665 180706075 -1709167 - MER1A DNA MER1_type -2 527 102 209 317 163 31 chr6 180706102 180706329 -1708913 + L2 LINE L2 3001 3257 -15 1319 174 16 99 chr6 180707498 180707820 -1707422 - AluJo SINE Alu -7 295 1 302 257 0 0 chr6 180712427 180712497 -1702745 + Tigger3(Golem) DNA MER2_type 14 83 -2946 547 202 0 44 chr6 180712626 180712693 -1702549 + Tigger3(Golem) DNA MER2_type 2919 2981 -47 2445 111 42 3 chr6 180712693 180713054 -1702188 - THE1C LTR MaLR 0 375 1 547 202 0 44 chr6 180713054 180713100 -1702142 + Tigger3(Golem) DNA MER2_type 2981 3027 -1 456 117 0 0 chr6 180714935 180715012 -1700230 + (CA)n Simple_repeat Simple_repeat 2 78 0 1554 108 37 29 chr6 180718206 180718447 -1696795 + AluSq SINE Alu 50 292 -21 363 269 7 0 chr6 180719753 180720042 -1695200 + (TG)n Simple_repeat Simple_repeat 1 291 0 561 266 3 3 chr6 180720088 180720760 -1694482 + (TG)n Simple_repeat Simple_repeat 1 672 0 2334 105 0 0 chr6 180722637 180722933 -1692309 - AluSx SINE Alu -16 296 1 1503 169 65 0 chr6 180723091 180723370 -1691872 + AluJo SINE Alu 1 297 -15 1390 253 70 25 chr6 180723632 180724107 -1691135 + L1MB5 LINE L1 5429 5924 -250 389 231 9 9 chr6 180724116 180724229 -1691013 + L1MB5 LINE L1 5830 5945 -229 1376 203 23 29 chr6 180724240 180724550 -1690692 + L1MB5 LINE L1 5845 6152 -22 2898 10 0 0 chr6 180724564 180724872 -1690370 - AluYb8 SINE Alu -10 308 1 2074 111 0 39 chr6 180724877 180725183 -1690059 - AluY SINE Alu -17 294 1 225 286 133 11 chr6 180728779 180728910 -1686332 + MIR SINE MIR 103 256 -6 367 273 18 49 chr6 180731892 180732074 -1683168 + L1M3 LINE L1 5280 5457 -711 386 299 143 45 chr6 180732094 180732402 -1682840 + L1ME3A LINE L1 5415 5752 -410 253 256 33 50 chr6 180732737 180732858 -1682384 + L1ME3A LINE L1 6051 6169 -1 244 257 257 9 chr6 180733215 180733324 -1681918 - MIR SINE MIR -53 155 20 790 138 14 43 chr6 180735449 180735587 -1679655 + AluJo SINE Alu 2 135 -177 23 33 0 0 chr6 180735804 180735834 -1679408 + AT_rich Low_complexity Low_complexity 1 30 0 2270 89 0 0 chr6 180736441 180736754 -1678488 - AluY SINE Alu 0 311 1 316 344 61 0 chr6 180737486 180737649 -1677593 - MER5A DNA MER1_type -8 181 9 661 285 48 1 chr6 180741339 180741557 -1673685 + MIR SINE MIR 33 258 -4 205 324 0 0 chr6 180741982 180742050 -1673192 - MIR SINE MIR -63 145 78 1985 119 0 0 chr6 180745918 180746187 -1669055 + AluSx SINE Alu 44 312 0 234 0 0 0 chr6 180747736 180747762 -1667480 + (A)n Simple_repeat Simple_repeat 1 26 0 503 224 20 93 chr6 180748752 180749010 -1666232 + L1MA9 LINE L1 5864 6098 -214 310 276 58 0 chr6 180749727 180749814 -1665428 - MIR SINE MIR -159 103 12 2174 108 0 38 chr6 180749836 180750151 -1665091 - AluSq SINE Alu -10 303 1 2002 134 95 37 chr6 180750777 180751187 -1664055 - Tigger2a DNA MER2_type 0 434 1 2292 127 13 21 chr6 180752435 180752813 -1662429 + THE1C LTR MaLR 1 375 0 2115 127 0 0 chr6 180752908 180753238 -1662004 - AluSx SINE Alu 0 330 1 26 0 0 0 chr6 180753657 180753683 -1661559 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr6 180753761 180753792 -1661450 + AT_rich Low_complexity Low_complexity 1 31 0 193 214 0 0 chr6 180754426 180754468 -1660774 + L2 LINE L2 3271 3312 -1 24 32 0 0 chr6 180754614 180754645 -1660597 + AT_rich Low_complexity Low_complexity 1 31 0 1792 19 19 0 chr6 180758080 180758296 -1656946 - L1PA4 LINE L1 0 6155 5936 294 267 143 0 chr6 180759978 180760083 -1655159 + MIR SINE MIR 46 165 -97 756 222 0 0 chr6 180760268 180760448 -1654794 + (TG)n Simple_repeat Simple_repeat 1 180 0 2363 109 3 0 chr6 180760658 180760969 -1654273 + AluSx SINE Alu 1 312 0 321 233 12 48 chr6 180764756 180764880 -1650362 + L1MC4 LINE L1 1995 6989 -1333 183 186 0 0 chr6 180764903 180764946 -1650296 + (CA)n Simple_repeat Simple_repeat 2 44 0 1459 161 77 7 chr6 180764995 180765294 -1649948 + MLT1A1 LTR MaLR 1 320 -45 432 229 34 0 chr6 180765654 180765772 -1649470 - L1M4 LINE L1 -855 5291 5170 432 217 11 0 chr6 180766115 180766207 -1649035 - L1M4 LINE L1 -983 5163 5071 353 237 21 0 chr6 180766521 180766614 -1648628 + MER53 DNA DNA 95 189 0 1037 200 42 93 chr6 180766701 180767086 -1648156 - MLT1B LTR MaLR 0 390 26 2013 112 3 62 chr6 180767961 180768283 -1646959 - AluSc SINE Alu -6 303 1 1399 175 16 19 chr6 180769778 180770086 -1645156 - L1MC2 LINE L1 -11 6333 6027 3525 203 40 45 chr6 180770086 180770917 -1644325 - L1MC2 LINE L1 -257 6087 5262 1948 170 0 10 chr6 180770917 180771228 -1644014 - AluJb SINE Alu -4 308 1 3525 203 40 45 chr6 180771228 180771578 -1643664 - L1MC2 LINE L1 -1082 5262 4912 471 303 137 8 chr6 180775246 180775480 -1639762 - MLT1K LTR MaLR -200 388 125 213 284 62 0 chr6 180777487 180777568 -1637674 + MIR SINE MIR 16 101 -161 315 320 0 10 chr6 180777735 180777838 -1637404 - Charlie1 DNA MER1_type 0 2761 2660 381 292 17 17 chr6 180777936 180778056 -1637186 - Charlie1 DNA MER1_type -2641 120 1 282 345 36 0 chr6 180779442 180779581 -1635661 + MIR SINE MIR 29 172 -90 275 336 91 0 chr6 180779680 180779823 -1635419 + MIR SINE MIR 106 261 -1 257 330 122 0 chr6 180780502 180780617 -1634625 - MIR SINE MIR -74 188 60 239 363 11 0 chr6 180781920 180782011 -1633231 + MIR SINE MIR 49 140 -122 1860 167 37 3 chr6 180782017 180782316 -1632926 - AluJb SINE Alu -3 309 1 24 0 0 0 chr6 180782670 180782694 -1632548 + AT_rich Low_complexity Low_complexity 1 24 0 281 343 62 0 chr6 180782853 180782999 -1632243 + MER5A DNA MER1_type 35 189 0 235 320 114 27 chr6 180783360 180783579 -1631663 + L2 LINE L2 2990 3227 -86 300 256 39 13 chr6 180784589 180784667 -1630575 - L1ME4a LINE L1 -3 6118 6039 299 333 0 19 chr6 180784723 180784879 -1630363 + (CCCTG)n Simple_repeat Simple_repeat 3 155 0 391 258 110 13 chr6 180786085 180786240 -1629002 - HsTC2 DNA Tc2 -7 1891 1722 2454 283 57 26 chr6 180786260 180786452 -1628790 - L1ME2 LINE L1 -27 6137 5952 1699 196 0 3 chr6 180786452 180786743 -1628499 - AluJo SINE Alu -22 290 1 2454 283 57 26 chr6 180786743 180788346 -1626896 - L1ME2 LINE L1 -212 5952 4256 424 323 0 0 chr6 180788374 180788504 -1626738 - L1ME2 LINE L1 -2065 4081 3952 2836 148 63 39 chr6 180788779 180789365 -1625877 - MER4A LTR ERV1 0 600 1 1357 178 18 118 chr6 180789367 180789605 -1625637 - MLT1A1 LTR MaLR -1 364 180 2338 119 0 0 chr6 180789605 180789908 -1625334 - AluSx SINE Alu -9 303 1 1357 178 18 118 chr6 180789908 180790068 -1625174 - MLT1A1 LTR MaLR -185 180 6 1824 126 66 11 chr6 180790295 180790581 -1624661 + AluSx SINE Alu 1 302 -10 239 122 61 49 chr6 180793070 180793152 -1622090 + (TATAA)n Simple_repeat Simple_repeat 2 84 0 217 302 12 58 chr6 180798427 180798513 -1616729 - L2 LINE L2 0 3313 3232 598 182 11 5 chr6 180800163 180800928 -1614314 + (CA)n Simple_repeat Simple_repeat 1 769 0 254 159 14 0 chr6 180801002 180801071 -1614171 + (CA)n Simple_repeat Simple_repeat 1 70 0 2419 102 0 3 chr6 180801197 180801511 -1613731 + AluSq SINE Alu 1 313 0 294 322 42 17 chr6 180803109 180803227 -1612015 - L2 LINE L2 0 3313 3193 1943 137 13 63 chr6 180804001 180804395 -1610847 + THE1C LTR MaLR 1 374 -1 195 163 47 23 chr6 180804503 180804546 -1610696 - L2 LINE L2 -557 2757 2714 546 296 49 65 chr6 180804587 180804911 -1610331 - L2 LINE L2 -5 3308 2990 562 320 75 18 chr6 180805165 180805446 -1609796 - MLT1L LTR MaLR -177 438 142 21 0 0 0 chr6 180806639 180806660 -1608582 + AT_rich Low_complexity Low_complexity 1 21 0 185 271 17 0 chr6 180810738 180810797 -1604445 + MIR SINE MIR 193 252 -10 527 346 38 35 chr6 180814670 180815417 -1599825 + TAR1 Satellite telomeric 1 749 -561 538 338 44 47 chr6 180815432 180816846 -1598396 + TAR1 Satellite telomeric 1 1409 -564 451 235 78 26 chr6 180819158 180819311 -1595931 + MER45A DNA AcHobo 1 161 -17 393 247 0 59 chr6 180819427 180819613 -1595629 + GA-rich Low_complexity Low_complexity 3 177 0 1938 145 43 38 chr6 180822577 180822950 -1592292 - THE1C LTR MaLR 0 375 1 2539 57 0 3 chr6 180823040 180823339 -1591903 - AluY SINE Alu -13 298 1 564 196 18 0 chr6 180823379 180823491 -1591751 + MER57A LTR ERV1 265 378 -25 1879 113 98 0 chr6 180824403 180824556 -1590686 - AluSx SINE Alu -11 301 164 297 0 0 0 chr6 180824556 180824589 -1590653 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1879 113 98 0 chr6 180824589 180824709 -1590533 - AluSx SINE Alu -148 164 1 25 0 0 0 chr6 180824709 180824734 -1590508 + AT_rich Low_complexity Low_complexity 1 25 0 501 231 0 54 chr6 180824738 180824868 -1590374 + FLAM_C SINE Alu 3 125 -18 259 327 79 0 chr6 180825197 180825298 -1589944 - MIR SINE MIR -3 259 151 403 215 9 4 chr6 180825622 180825851 -1589391 + (CA)n Simple_repeat Simple_repeat 1 230 0 591 201 0 0 chr6 180825862 180826041 -1589201 + (CA)n Simple_repeat Simple_repeat 2 180 0 645 255 146 50 chr6 180828896 180829300 -1585942 + MER65A LTR ERV1 3 445 0 8419 60 2 0 chr6 180831304 180832373 -1582869 + MER11C LTR ERVK 1 1071 0 488 298 59 65 chr6 180833625 180833947 -1581295 - L3 LINE CR1 -737 840 521 2573 100 0 11 chr6 180834865 180835244 -1579998 + THE1C LTR MaLR 1 375 0 229 376 17 23 chr6 180835294 180835467 -1579775 + MIR SINE MIR 91 262 0 2422 98 0 0 chr6 180836662 180836959 -1578283 + AluSx SINE Alu 1 297 -15 245 101 88 31 chr6 180837920 180838079 -1577163 + CT-rich Low_complexity Low_complexity 3 170 0 265 44 0 44 chr6 180839123 180839168 -1576074 + (CCCTG)n Simple_repeat Simple_repeat 3 45 0 965 186 91 0 chr6 180840461 180840692 -1574550 - L1MA4 LINE L1 -6 6294 6043 195 34 0 102 chr6 180841248 180841307 -1573935 + (TTGTG)n Simple_repeat Simple_repeat 1 53 0 2208 162 13 2 chr6 180843163 180843559 -1571683 - MER57A LTR ERV1 -3 400 1 312 380 68 8 chr6 180844318 180844581 -1570661 + L2 LINE L2 2699 2977 -337 2319 114 0 0 chr6 180845714 180846013 -1569229 - AluSx SINE Alu -3 309 11 335 286 11 0 chr6 180852262 180852353 -1562889 - L1MB4 LINE L1 -3 6177 6086 2316 110 0 0 chr6 180852832 180853133 -1562109 + AluSq SINE Alu 1 301 -12 226 112 45 112 chr6 180853202 180853291 -1561951 + (CTAAA)n Simple_repeat Simple_repeat 3 85 0 2168 140 10 0 chr6 180857309 180857609 -1557633 + AluSx SINE Alu 8 310 -2 1449 227 97 0 chr6 180858676 180859037 -1556205 - MSTD LTR MaLR 0 396 1 655 112 46 16 chr6 180859945 180860178 -1555064 + (TG)n Simple_repeat Simple_repeat 1 239 0 764 210 68 34 chr6 180860254 180860459 -1554783 - MER74A LTR ERVL 0 558 347 255 353 0 0 chr6 180860501 180860637 -1554605 + G-rich Low_complexity Low_complexity 4 139 0 379 339 0 0 chr6 180860651 180860828 -1554414 + G-rich Low_complexity Low_complexity 4 180 0 254 312 23 17 chr6 180860867 180861040 -1554202 + (TTGGGG)n Simple_repeat Simple_repeat 4 177 0 428 184 166 43 chr6 180861087 180861250 -1553992 - MER74A LTR ERVL -375 183 1 2050 92 31 34 chr6 180862403 180862696 -1552546 + AluSc SINE Alu 1 292 -17 1053 279 122 50 chr6 180863496 180864325 -1550917 - L2 LINE L2 -360 2954 2066 943 196 29 0 chr6 180864799 180865003 -1550239 - MER2 DNA MER2_type -135 210 1 617 153 189 0 chr6 180865475 180865586 -1549656 - FLAM_C SINE Alu 0 133 2 23 33 0 0 chr6 180866880 180866910 -1548332 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 180867163 180867185 -1548057 + AT_rich Low_complexity Low_complexity 1 22 0 287 232 134 110 chr6 180869168 180869332 -1545910 + MIR SINE MIR 50 217 -45 2303 115 0 13 chr6 180869495 180869809 -1545433 + AluSx SINE Alu 1 310 -2 442 251 0 43 chr6 180869909 180870208 -1545034 + C-rich Low_complexity Low_complexity 1 286 0 2356 110 0 7 chr6 180870973 180871281 -1543961 + AluSx SINE Alu 1 306 -6 791 162 0 0 chr6 180873590 180873707 -1541535 - AluSg/x SINE Alu -24 288 172 230 333 75 0 chr6 180875901 180875994 -1539248 + MIR SINE MIR 75 174 -88 233 356 30 22 chr6 180876549 180876684 -1538558 + L2 LINE L2 1106 1241 -2073 1494 189 52 84 chr6 180878099 180878564 -1536678 - LTR7 LTR ERV1 0 450 1 663 258 9 5 chr6 180879185 180879402 -1535840 - HERVH LTR ERV1 -3182 4531 4314 24 32 0 0 chr6 180879452 180879483 -1535759 + AT_rich Low_complexity Low_complexity 1 31 0 338 325 0 0 chr6 180879483 180879597 -1535645 - HERVH LTR ERV1 -3430 4283 4170 5814 137 14 10 chr6 180879599 180880564 -1534678 - HERVH LTR ERV1 -4076 3637 2669 705 115 18 0 chr6 180880569 180880682 -1534560 + MER4D LTR ERV1 1 115 -788 5933 92 10 26 chr6 180880682 180881271 -1533971 + L1PB1 LINE L1 5219 5792 -359 252 0 0 0 chr6 180881271 180881299 -1533943 + (CA)n Simple_repeat Simple_repeat 2 29 0 5933 92 10 26 chr6 180881299 180881653 -1533589 + L1PB1 LINE L1 5792 6150 -1 1403 144 13 123 chr6 180881695 180881745 -1533497 + MER4E LTR ERV1 322 376 -403 2060 161 0 13 chr6 180881745 180882055 -1533187 - AluSx SINE Alu -6 306 1 1403 144 13 123 chr6 180882055 180882387 -1532855 + MER4E LTR ERV1 376 662 -117 869 120 13 57 chr6 180882501 180882659 -1532583 + MER4D LTR ERV1 753 903 0 4691 132 54 3 chr6 180883132 180883872 -1531370 + MER4E LTR ERV1 1 778 -1 287 281 35 79 chr6 180885974 180886088 -1529154 - L2 LINE L2 -1 3271 3163 194 214 95 0 chr6 180886205 180886247 -1528995 + MER5A DNA MER1_type 112 157 -32 271 221 8 31 chr6 180886398 180886525 -1528717 + (CATA)n Simple_repeat Simple_repeat 4 127 0 1424 215 64 0 chr6 180886557 180886901 -1528341 - MLT2D LTR ERVL -48 366 1 204 158 0 0 chr6 180888014 180888052 -1527190 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 219 344 99 13 chr6 180888612 180888806 -1526436 - MIR SINE MIR -43 219 12 2125 105 0 24 chr6 180890647 180890973 -1524269 - AluSq SINE Alu 0 313 1 1625 192 0 14 chr6 180891086 180891394 -1523848 - AluJb SINE Alu 0 304 1 401 294 57 22 chr6 180891394 180891622 -1523620 - L1MEc LINE L1 -3174 3041 2806 384 208 77 56 chr6 180891692 180891835 -1523407 - L1MC2 LINE L1 0 8042 6255 1021 191 197 17 chr6 180891897 180892247 -1522995 + LTR54B LTR ERV1 1 413 -85 2140 77 0 3 chr6 180892257 180892542 -1522700 + L1PA8 LINE L1 5889 6172 0 242 286 55 0 chr6 180892813 180892904 -1522338 - L1MC4 LINE L1 -383 7659 7564 380 234 11 0 chr6 180893180 180893274 -1521968 - L1MC4 LINE L1 -765 7277 7183 367 270 52 29 chr6 180893549 180893723 -1521519 - MLT1C LTR MaLR -5 462 285 227 191 43 0 chr6 180894463 180894510 -1520732 - MLT1C LTR MaLR -266 124 76 334 200 0 67 chr6 180894539 180894629 -1520613 - MLT1C LTR MaLR -383 84 1 384 314 159 22 chr6 180894702 180894928 -1520314 - L1MEc LINE L1 -3992 2404 2148 253 263 26 0 chr6 180895381 180895457 -1519785 - HAL1 LINE L1 -899 1608 1531 2908 7 0 0 chr6 180897643 180897951 -1517291 + AluY SINE Alu 1 308 -3 237 294 0 0 chr6 180898113 180898198 -1517044 + L1MD2 LINE L1 6049 6133 -226 389 267 40 20 chr6 180898274 180898424 -1516818 + L1MD3 LINE L1 7784 7936 -59 2367 69 14 0 chr6 180898833 180899121 -1516121 - AluSp SINE Alu -16 297 6 256 379 35 7 chr6 180899477 180899622 -1515620 + MIR SINE MIR 44 192 -70 1809 129 44 0 chr6 180901364 180901665 -1513577 - AluSx SINE Alu 0 313 1 346 175 0 0 chr6 180903632 180903689 -1511553 + Charlie3 DNA MER1_type 2650 2706 -4 432 250 0 19 chr6 180904793 180904901 -1510341 + MER63 DNA MER1_type 43 774 -62 251 346 81 7 chr6 180907122 180907258 -1507984 + MIR SINE MIR 39 184 -78 1257 25 0 37 chr6 180908296 180908458 -1506784 - L1PA4 LINE L1 0 6155 6000 285 277 43 11 chr6 180909607 180909701 -1505541 + MIR SINE MIR 162 258 -4 271 234 93 0 chr6 180912804 180912911 -1502331 - L2 LINE L2 -350 2964 2848 476 213 0 6 chr6 180915384 180915558 -1499684 + (ATG)n Simple_repeat Simple_repeat 1 173 0 449 220 0 6 chr6 180915611 180915788 -1499454 + (ATG)n Simple_repeat Simple_repeat 3 178 0 231 272 0 0 chr6 180915842 180916000 -1499242 + (ATG)n Simple_repeat Simple_repeat 3 160 0 409 246 3 3 chr6 180916059 180916432 -1498810 + (ATG)n Simple_repeat Simple_repeat 1 373 0 290 221 0 8 chr6 180916449 180916571 -1498671 + (ATG)n Simple_repeat Simple_repeat 1 121 0 347 237 0 6 chr6 180916608 180916781 -1498461 + (ATG)n Simple_repeat Simple_repeat 1 172 0 424 204 11 0 chr6 180916808 180916984 -1498258 + (ATG)n Simple_repeat Simple_repeat 3 180 0 228 258 67 0 chr6 180919431 180919520 -1495722 + (ATGTG)n Simple_repeat Simple_repeat 5 99 0 975 248 96 44 chr6 180919527 180919963 -1495279 + MLT1C LTR MaLR 6 464 -3 1995 142 19 16 chr6 180920449 180920759 -1494483 - AluSx SINE Alu -1 311 1 1229 182 116 0 chr6 180921125 180921383 -1493859 + MSTA LTR MaLR 132 419 -9 222 118 0 0 chr6 180921753 180921787 -1493455 + (T)n Simple_repeat Simple_repeat 1 34 0 216 97 0 0 chr6 180921989 180922020 -1493222 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 355 308 26 8 chr6 180922082 180922199 -1493043 + MIR SINE MIR 21 139 -123 1482 253 35 35 chr6 180922215 180922670 -1492572 + MLT1C LTR MaLR 1 455 -12 2681 96 3 3 chr6 180923596 180923950 -1491292 + THE1A LTR MaLR 1 354 -1 2244 64 11 7 chr6 180927670 180927953 -1487289 - AluY SINE Alu 0 311 28 23 0 0 0 chr6 180928176 180928199 -1487043 + AT_rich Low_complexity Low_complexity 1 23 0 876 173 6 52 chr6 180929274 180929447 -1485795 + FRAM SINE Alu 2 166 0 636 229 94 82 chr6 180929895 180930236 -1485006 - MLT1B LTR MaLR 0 390 46 4133 132 30 5 chr6 180932105 180932779 -1482463 + L1MA2 LINE L1 5614 6304 0 187 269 317 21 chr6 180933581 180933726 -1481516 + MIR SINE MIR 56 243 -19 37 69 0 0 chr6 180933903 180933975 -1481267 + AT_rich Low_complexity Low_complexity 1 72 0 180 0 0 0 chr6 180934733 180934753 -1480489 + (A)n Simple_repeat Simple_repeat 1 20 0 2034 189 73 0 chr6 180935394 180935791 -1479451 - MSTB LTR MaLR 0 426 1 697 124 11 48 chr6 180936955 180937141 -1478101 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 296 232 0 0 chr6 180937146 180937202 -1478040 + CT-rich Low_complexity Low_complexity 3 58 0 2070 196 20 31 chr6 180937308 180937798 -1477444 - MER31A LTR ERV1 0 485 1 1155 279 54 48 chr6 180938727 180939429 -1475813 + L1MDa LINE L1 1022 1727 -4813 510 188 18 9 chr6 180941787 180941899 -1473343 + MLT1A1 LTR MaLR 17 129 -236 21 71 0 0 chr6 180942631 180942673 -1472569 + AT_rich Low_complexity Low_complexity 1 42 0 411 234 0 0 chr6 180943340 180943464 -1471778 + (TG)n Simple_repeat Simple_repeat 2 125 0 206 309 41 16 chr6 180943478 180943601 -1471641 - L2 LINE L2 -333 2980 2855 4157 143 63 52 chr6 180943611 180944549 -1470693 - pTR5 LTR ERV1 0 2606 1524 2403 163 16 47 chr6 180944555 180945114 -1470128 - pTR5 LTR ERV1 -1085 1353 812 263 338 59 64 chr6 180945243 180945288 -1469954 - L2 LINE L2 -1169 2145 2101 2222 107 0 3 chr6 180945288 180945588 -1469654 + AluSx SINE Alu 14 312 0 263 338 59 64 chr6 180945588 180945900 -1469342 - L2 LINE L2 -1213 2101 1790 1857 243 137 14 chr6 180947919 180948422 -1466820 - L1ME2 LINE L1 -2 6162 5722 2214 128 39 33 chr6 180948422 180948782 -1466460 + THE1B LTR MaLR 3 364 0 1857 243 137 14 chr6 180948782 180949887 -1465355 - L1ME2 LINE L1 -442 5722 4333 7897 169 12 19 chr6 180949924 180950273 -1464969 - L1PB2 LINE L1 -7 6144 5794 198 0 0 0 chr6 180950273 180950295 -1464947 + (TG)n Simple_repeat Simple_repeat 2 23 0 7897 169 12 19 chr6 180950295 180950564 -1464678 - L1PB2 LINE L1 -357 5794 5524 1838 68 0 0 chr6 180950564 180950785 -1464457 + AluY SINE Alu 81 301 -10 7897 169 12 19 chr6 180950785 180952671 -1462571 - L1PB2 LINE L1 -627 5524 3659 371 322 43 0 chr6 180952713 180952946 -1462296 - L1ME2 LINE L1 -1866 4280 4038 2664 152 113 27 chr6 180952964 180953476 -1461766 - MER21A LTR ERV1 0 931 376 943 135 250 10 chr6 180953481 180953681 -1461561 - MER21A LTR ERV1 -667 264 17 264 310 39 32 chr6 180953978 180954133 -1461109 - L1ME2 LINE L1 -2307 3839 3684 339 86 29 29 chr6 180954134 180954204 -1461038 + (TTTC)n Simple_repeat Simple_repeat 4 73 0 2546 258 79 57 chr6 180954316 180955139 -1460103 + L1MEc LINE L1 50 889 -5326 1726 136 24 0 chr6 180955139 180955389 -1459853 + AluSq SINE Alu 1 256 -57 2546 258 79 57 chr6 180955389 180956004 -1459238 + L1MEc LINE L1 889 1489 -4726 1419 184 28 21 chr6 180956035 180956361 -1458881 + MER4A LTR ERV1 1 328 -336 240 81 0 293 chr6 180956372 180956471 -1458771 + MER4A LTR ERV1 288 357 -307 289 173 27 40 chr6 180956584 180956659 -1458583 + MER4C LTR ERV1 383 456 -9 3581 233 60 33 chr6 180956670 180957736 -1457506 + L1M4 LINE L1 20 1114 -5428 1938 137 178 6 chr6 180957738 180958103 -1457139 - MSTA LTR MaLR 0 428 1 1732 226 49 39 chr6 180958103 180958486 -1456756 + L1M4 LINE L1 1113 1491 -5051 2172 137 70 41 chr6 180958486 180958844 -1456398 + MSTA LTR MaLR 1 375 -53 1858 102 51 33 chr6 180958844 180959156 -1456086 + AluSg SINE Alu 1 317 0 2172 137 70 41 chr6 180959156 180959212 -1456030 + MSTA LTR MaLR 375 428 0 1732 226 49 39 chr6 180959212 180959334 -1455908 + L1M4 LINE L1 1491 1626 -4916 3832 194 14 12 chr6 180959334 180960054 -1455188 + MER72 LTR ERV1 2 722 0 1732 226 49 39 chr6 180960054 180960082 -1455160 + L1M4 LINE L1 1626 1652 -4890 240 275 75 8 chr6 180960081 180960201 -1455041 + L1M4 LINE L1 3523 3650 -2994 * 616 256 15 10 chr6 180960194 180960393 -1454849 + L1M4 LINE L1 3912 4111 -2533 * 3789 192 9 28 chr6 180960378 180960454 -1454788 + L1 LINE L1 3440 3516 -2630 1926 134 3 7 chr6 180960454 180960738 -1454504 + AluSx SINE Alu 1 320 0 313 27 0 0 chr6 180960738 180960775 -1454467 + (TAAA)n Simple_repeat Simple_repeat 2 164 0 3789 192 9 28 chr6 180960775 180961526 -1453716 + L1 LINE L1 3516 4251 -1895 270 200 0 0 chr6 180961530 180961575 -1453667 + Alu SINE Alu 1 45 -258 21 0 0 0 chr6 180961906 180961927 -1453315 + GC_rich Low_complexity Low_complexity 1 21 0 422 132 92 0 chr6 180962677 180962753 -1452489 + L1MA6 LINE L1 6214 6296 -4 21 36 0 0 chr6 180963547 180963575 -1451667 + AT_rich Low_complexity Low_complexity 1 28 0 1939 221 31 12 chr6 180963790 180964206 -1451036 - MSTB LTR MaLR -2 424 1 4400 206 68 20 chr6 180964206 180965373 -1449869 - MSTB-int LTR MaLR 0 1580 328 1660 177 91 60 chr6 180965554 180965938 -1449304 + MSTD LTR MaLR 1 396 0 41 48 0 0 chr6 180966318 180966380 -1448862 + AT_rich Low_complexity Low_complexity 1 62 0 1571 200 3 7 chr6 180967430 180967720 -1447522 - AluJo SINE Alu -23 289 1 234 247 31 41 chr6 180967750 180967847 -1447395 - LTR16C LTR ERVL -27 464 369 597 235 48 6 chr6 180968007 180968173 -1447069 - L1MB8 LINE L1 0 6178 6006 1467 252 27 20 chr6 180968231 180968679 -1446563 - L1M4 LINE L1 -2004 4953 4503 426 266 11 0 chr6 180968727 180968821 -1446421 - MLT1D LTR MaLR -117 388 294 293 352 83 26 chr6 180968893 180969086 -1446156 - MLT1D-int LTR MaLR -493 878 675 207 69 0 0 chr6 180969285 180969314 -1445928 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4275 124 5 2 chr6 180969355 180969969 -1445273 + HERVL-A2 LTR ERVL 893 1508 -4146 2727 115 13 0 chr6 180969978 180970362 -1444880 + HERVL-A2 LTR ERVL 1343 1731 -3923 4791 128 159 25 chr6 180970367 180971362 -1443880 - MER11B LTR ERVK -4 1232 1 10763 91 9 3 chr6 180971362 180972764 -1442478 + HERVL-A2 LTR ERVL 1726 3136 -2518 538 137 14 0 chr6 180972864 180972965 -1442277 + HERVL-A2 LTR ERVL 5572 5654 0 1944 180 50 21 chr6 180972965 180973507 -1441735 + MLT2A2 LTR ERVL 1 554 0 1112 272 33 15 chr6 180973515 180974147 -1441095 - MLT1D-int LTR MaLR -844 527 1 459 233 0 0 chr6 180974147 180974250 -1440992 - MLT1D LTR MaLR 0 505 403 833 293 84 15 chr6 180974256 180974529 -1440713 - MLT1D LTR MaLR -213 292 1 1204 252 54 47 chr6 180974530 180975357 -1439885 - L1MEc LINE L1 -3688 3269 2469 996 228 25 32 chr6 180975368 180975684 -1439558 - L1MEc LINE L1 -4798 2161 1848 462 231 33 0 chr6 180975697 180975788 -1439454 - L1MEc LINE L1 -6512 347 254 217 0 61 0 chr6 180975791 180975824 -1439418 + (TG)n Simple_repeat Simple_repeat 2 36 0 531 238 40 0 chr6 180975824 180975975 -1439267 + L1M4c LINE L1 1572 1728 -4656 822 257 37 28 chr6 180976091 180976309 -1438933 - L1MEc LINE L1 -6638 221 2 338 281 131 0 chr6 180976853 180977006 -1438236 + L2 LINE L2 3123 3295 -18 371 258 95 29 chr6 180978855 180979111 -1436131 - L2 LINE L2 -270 3043 2773 850 275 92 67 chr6 180980410 180980933 -1434309 + MLT1F1 LTR MaLR 7 567 0 1681 127 127 0 chr6 180981624 180981877 -1433365 - AluSx SINE Alu -17 295 11 261 304 25 0 chr6 180981880 180981959 -1433283 - MER5B DNA MER1_type -16 162 82 1007 188 5 45 chr6 180982062 180982286 -1432956 + AluJb SINE Alu 87 301 -11 2138 116 3 0 chr6 180984197 180984490 -1430752 + AluSx SINE Alu 1 294 -18 212 0 0 35 chr6 180984899 180984928 -1430314 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1741 46 0 0 chr6 180984941 180985137 -1430105 - AluY SINE Alu -29 282 87 1433 181 63 17 chr6 180987345 180987519 -1427723 - AluSx SINE Alu -10 302 108 381 43 0 0 chr6 180987519 180987566 -1427676 + (TG)n Simple_repeat Simple_repeat 2 48 0 1433 181 63 17 chr6 180987566 180987678 -1427564 - AluSx SINE Alu -204 108 3 250 307 114 29 chr6 180988480 180988620 -1426622 - HAL1 LINE L1 -520 1987 1836 1064 266 76 91 chr6 180988670 180989746 -1425496 - HAL1 LINE L1 -846 1661 602 1319 246 57 10 chr6 180989891 180990294 -1424948 + MLT1D LTR MaLR 3 424 -81 264 302 67 17 chr6 180990796 180990975 -1424267 + MLT1I LTR MaLR 222 409 0 816 108 23 0 chr6 180991254 180991383 -1423859 + MSTA LTR MaLR 1 132 -296 * 1993 136 7 92 chr6 180991378 180991804 -1423438 + MSTA LTR MaLR 32 421 -7 1780 137 0 4 chr6 180994282 180994538 -1420704 - AluSx SINE Alu -21 291 37 335 320 22 22 chr6 180994539 180994717 -1420525 - MER5B DNA MER1_type 0 178 1 786 268 116 37 chr6 180995775 180996130 -1419112 - MLT1F LTR MaLR -33 509 127 196 297 93 32 chr6 180996272 180996518 -1418724 + L2 LINE L2 2842 3102 -211 422 311 34 0 chr6 181046995 181047143 -1368099 - MIR SINE MIR -57 205 53 190 259 108 108 chr6 181048389 181048528 -1366714 + MIR SINE MIR 56 194 -68 1578 277 103 37 chr6 181049021 181050302 -1364940 - L1MEc LINE L1 -3012 3203 1863 339 311 41 51 chr6 181050309 181050505 -1364737 - L1MEc LINE L1 -4593 1803 1610 1599 249 47 86 chr6 181050582 181051613 -1363629 - L1ME2 LINE L1 -134 6030 5029 1162 263 60 2 chr6 181051605 181052024 -1363218 + L1MC3 LINE L1 2617 3059 -3087 * 1302 252 74 32 chr6 181052100 181052561 -1362681 + L1MA9 LINE L1 5795 6274 -38 * 2335 242 33 55 chr6 181052556 181053469 -1361773 + L1MC3 LINE L1 4375 5267 -879 1810 256 91 42 chr6 181053500 181054247 -1360995 + L1MC3 LINE L1 5456 6239 -1546 220 195 0 0 chr6 181056393 181056434 -1358808 + (TG)n Simple_repeat Simple_repeat 2 42 0 197 304 70 52 chr6 181056435 181056518 -1358724 - MIR SINE MIR -95 167 80 1847 167 0 25 chr6 181056518 181056836 -1358406 - AluSq SINE Alu -3 310 1 197 304 70 52 chr6 181056836 181056867 -1358375 - MIR SINE MIR -182 80 51 1023 193 119 26 chr6 181057047 181057317 -1357925 - L1MB8 LINE L1 -2 6176 5882 266 268 37 12 chr6 181058031 181058113 -1357129 + MIR3 SINE MIR 85 168 -40 1588 243 57 20 chr6 181058811 181059424 -1355818 - L1MB8 LINE L1 -758 5388 4781 970 78 78 0 chr6 181059746 181059875 -1355367 + MER85 DNA T2_type 1 139 0 270 263 26 13 chr6 181062925 181063001 -1352241 - MIR3 SINE MIR -33 175 99 265 208 42 0 chr6 181063316 181063388 -1351854 + MER112 DNA MER1_type 92 166 -94 242 244 16 94 chr6 181063405 181063532 -1351710 + MER112 DNA MER1_type 138 254 -6 570 307 102 15 chr6 181063913 181064498 -1350744 - L1MDa LINE L1 -4834 1796 1060 209 237 0 72 chr6 181066801 181066898 -1348344 + T-rich Low_complexity Low_complexity 6 95 0 396 59 0 0 chr6 181067892 181067943 -1347299 + (CA)n Simple_repeat Simple_repeat 2 52 0 1289 250 82 36 chr6 181067944 181068300 -1346942 - MLT1A2 LTR MaLR -2 372 1 3011 241 75 80 chr6 181068303 181069672 -1345570 - MLT1A2-int LTR MaLR -5 1366 5 1514 178 20 99 chr6 181069676 181070069 -1345173 - MLT1A2 LTR MaLR 0 374 13 292 271 12 0 chr6 181070098 181070268 -1344974 + (CA)n Simple_repeat Simple_repeat 1 172 0 216 67 0 0 chr6 181070286 181070316 -1344926 + (CA)n Simple_repeat Simple_repeat 1 30 0 216 0 0 0 chr6 181070379 181070403 -1344839 + (TATATG)n Simple_repeat Simple_repeat 1 24 0 267 31 0 0 chr6 181071504 181071536 -1343706 + (CA)n Simple_repeat Simple_repeat 1 32 0 182 219 73 24 chr6 181071723 181071805 -1343437 + MIR SINE MIR 129 214 -48 9464 29 46 0 chr6 181072241 181073408 -1341834 - L1PA3 LINE L1 -2932 3214 1994 19422 27 2 0 chr6 181073408 181076341 -1338901 + L1PA3 LINE L1 3218 6151 -4 1917 279 47 41 chr6 181076369 181077202 -1338040 + L1MCb LINE L1 43 880 -5165 754 276 4 9 chr6 181077194 181077422 -1337820 + L1MCb LINE L1 2590 2816 -3748 * 2629 279 44 19 chr6 181077428 181079726 -1335516 + L1 LINE L1 302 2374 -3660 1579 234 21 60 chr6 181079729 181080247 -1334995 + L1 LINE L1 4563 5060 -974 3724 188 29 7 chr6 181080254 181081078 -1334164 + L1M3a LINE L1 2577 3418 -2616 798 197 75 0 chr6 181081078 181081225 -1334017 + AluJb SINE Alu 145 302 -10 2381 191 73 2 chr6 181081240 181081593 -1333649 + L1MA9 LINE L1 5785 6184 -128 180 0 0 0 chr6 181081593 181081613 -1333629 + (CA)n Simple_repeat Simple_repeat 1 20 0 2381 191 73 2 chr6 181081613 181081752 -1333490 + L1MA9 LINE L1 6184 6312 0 280 275 154 20 chr6 181081750 181081899 -1333343 + L1M4 LINE L1 2387 2555 -3591 * 2118 303 19 9 chr6 181081928 181082833 -1332409 + L1M4 LINE L1 2802 3715 -2431 3281 214 36 13 chr6 181082837 181083631 -1331611 + L1MC3 LINE L1 6863 7675 -110 256 284 168 13 chr6 181083916 181084071 -1331171 - MIR SINE MIR -16 246 68 1627 114 0 13 chr6 181084075 181084302 -1330940 + AluSg SINE Alu 59 282 -28 222 195 0 0 chr6 181084340 181084381 -1330861 - MIR SINE MIR -193 69 29 204 288 62 0 chr6 181084532 181084612 -1330630 + (CATG)n Simple_repeat Simple_repeat 3 87 0 181 289 178 20 chr6 181084882 181085034 -1330208 + MIR SINE MIR 21 196 -66 271 289 72 59 chr6 181086261 181086413 -1328829 - MER57B LTR ERV1 -245 189 36 803 102 42 0 chr6 181087086 181087204 -1328038 + AluSc SINE Alu 187 309 0 322 284 151 76 chr6 181088153 181089158 -1326084 - L1M2 LINE L1 -5609 1240 471 294 302 24 30 chr6 181089428 181089597 -1325645 + C-rich Low_complexity Low_complexity 2 169 0 218 267 40 40 chr6 181090338 181090413 -1324829 + L2 LINE L2 3239 3313 0 2049 148 3 3 chr6 181090604 181090915 -1324327 - AluSx SINE Alu -1 311 1 2193 127 0 0 chr6 181090997 181091296 -1323946 - AluSx SINE Alu -13 299 1 1285 196 106 61 chr6 181092088 181092526 -1322716 - MER66A LTR ERV1 0 478 97 276 209 11 113 chr6 181092639 181092816 -1322426 + (CACCT)n Simple_repeat Simple_repeat 2 160 0 1387 143 46 0 chr6 181093313 181093530 -1321712 + MER30 DNA MER1_type 4 230 0 21 0 0 0 chr6 181094188 181094209 -1321033 + AT_rich Low_complexity Low_complexity 1 21 0 2258 110 0 22 chr6 181094469 181094787 -1320455 + AluSx SINE Alu 1 311 -1 1788 173 0 10 chr6 181094991 181095304 -1319938 - AluJo SINE Alu -2 310 1 426 272 29 0 chr6 181095678 181095781 -1319461 + L2 LINE L2 3203 3308 -5 3439 100 7 0 chr6 181096054 181096504 -1318738 - MLT2A2 LTR ERVL 0 453 1 1797 151 65 57 chr6 181098741 181099113 -1316129 - Tigger2 DNA MER2_type 0 2718 2344 966 246 63 7 chr6 181099120 181099421 -1315821 + L1MC3 LINE L1 7361 7678 -107 2116 127 7 0 chr6 181099497 181099797 -1315445 + AluSx SINE Alu 1 302 -10 251 173 58 0 chr6 181099806 181099858 -1315384 + L1MC3 LINE L1 7701 7755 -30 1070 294 89 13 chr6 181099895 181100513 -1314729 + L1MDa LINE L1 1725 2440 -4281 489 140 98 133 chr6 181100513 181100580 -1314662 + MER4B LTR ERV1 1 69 -541 2127 118 0 0 chr6 181100580 181100867 -1314375 - AluSq SINE Alu -22 291 5 489 140 98 133 chr6 181100867 181100942 -1314300 + MER4B LTR ERV1 69 138 -472 1232 169 42 0 chr6 181100964 181101177 -1314065 - MER61E LTR ERV1 -6 563 342 368 252 3 50 chr6 181101217 181101358 -1313884 - MER61E LTR ERV1 -380 189 75 394 228 70 84 chr6 181101361 181101610 -1313632 - LTR25 LTR ERV1 -397 172 1 2532 124 59 3 chr6 181101624 181102012 -1313230 + MER4E LTR ERV1 360 769 -10 184 276 115 11 chr6 181103122 181103209 -1312033 + MIR3 SINE MIR 1 96 -112 * 195 234 207 36 chr6 181103190 181103301 -1311941 + MIR SINE MIR 127 256 -6 2180 181 80 14 chr6 181103302 181103871 -1311371 - MER4E LTR ERV1 0 779 1 1598 139 28 66 chr6 181105188 181105547 -1309695 - MER4A LTR ERV1 0 664 261 598 143 0 10 chr6 181105547 181105645 -1309597 - MER4A LTR ERV1 -566 98 2 1998 208 132 40 chr6 181105860 181106436 -1308806 - MER51A LTR ERV1 -5 629 1 2246 262 88 25 chr6 181106479 181107431 -1307811 - L1ME1 LINE L1 -149 6297 5212 1938 143 10 3 chr6 181107431 181107725 -1307517 - AluSx SINE Alu -16 296 1 2246 262 88 25 chr6 181107725 181108384 -1306858 - L1ME1 LINE L1 -1234 5212 4596 1133 146 6 0 chr6 181108386 181108564 -1306678 - AluSg/x SINE Alu -14 298 120 675 271 0 0 chr6 181108575 181108741 -1306501 - L1ME1 LINE L1 -1851 4575 4410 1426 257 65 32 chr6 181108771 181109513 -1305729 - L1ME1 LINE L1 -2665 3761 2996 22 0 0 0 chr6 181109533 181109555 -1305687 + AT_rich Low_complexity Low_complexity 1 22 0 6375 222 21 18 chr6 181109555 181111709 -1303533 - L1PA15 LINE L1 0 7603 5459 3018 91 3 0 chr6 181111709 181112083 -1303159 + THE1C LTR MaLR 1 375 0 6375 222 21 18 chr6 181112083 181115099 -1300143 - L1PA15 LINE L1 -2144 5459 2411 565 296 55 35 chr6 181116070 181116418 -1298824 - L1PA15 LINE L1 -7226 355 1 375 309 0 0 chr6 181116421 181116544 -1298698 - L1ME1 LINE L1 -3422 3004 2882 1961 176 78 19 chr6 181116993 181117367 -1297875 + MSTD LTR MaLR 1 396 0 195 42 0 0 chr6 181120813 181120837 -1294405 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 234 203 68 68 chr6 181121068 181121142 -1294100 - MER116 DNA Mariner -6 74 1 2193 103 0 0 chr6 181124433 181124745 -1290497 - AluSx SINE Alu 0 312 1 751 255 58 25 chr6 181125367 181125759 -1289483 + L1MC4 LINE L1 7019 7420 -622 424 295 64 13 chr6 181126259 181126493 -1288749 - L1ME3 LINE L1 -68 6094 5849 426 282 146 45 chr6 181126645 181126932 -1288310 - L1ME1 LINE L1 -4804 1622 1307 6367 30 0 0 chr6 181128926 181129660 -1285582 - L1P LINE L1 -1511 4635 3902 8223 18 0 6 chr6 181129660 181130635 -1284607 + L1PA2 LINE L1 5179 6148 -7 234 0 0 0 chr6 181130664 181130690 -1284552 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 232 179 18 36 chr6 181130958 181131014 -1284228 + MLT1H LTR MaLR 489 543 -6 2309 169 41 12 chr6 181131490 181131904 -1283338 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr6 181134133 181134155 -1281087 + AT_rich Low_complexity Low_complexity 1 22 0 2486 69 0 3 chr6 181134337 181134642 -1280600 + AluY SINE Alu 1 304 -7 7844 154 18 11 chr6 181134642 181136930 -1278312 + L1PB4 LINE L1 3852 6155 -1 382 311 120 24 chr6 181137112 181137321 -1277921 - MIR SINE MIR -26 236 8 196 154 39 0 chr6 181137826 181137878 -1277364 + GA-rich Low_complexity Low_complexity 1 54 0 376 253 85 78 chr6 181138632 181138913 -1276329 - MLT1B LTR MaLR -157 233 24 309 321 18 0 chr6 181141169 181141281 -1273961 + MIR SINE MIR 113 226 -36 2346 89 0 10 chr6 181142480 181142782 -1272460 - AluSx SINE Alu -13 299 1 478 214 69 122 chr6 181143644 181143906 -1271336 + MLT2C1 LTR ERVL 96 343 -54 180 256 178 11 chr6 181143952 181144042 -1271200 - L2 LINE L2 -1 3312 3208 762 307 34 6 chr6 181144267 181144619 -1270623 + L1MA9 LINE L1 5913 6274 -38 1429 130 134 12 chr6 181145020 181145266 -1269976 + AluSg SINE Alu 2 277 -33 282 56 0 0 chr6 181145266 181145302 -1269940 + (CA)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chr6 181145404 181145424 -1269818 + (TA)n Simple_repeat Simple_repeat 2 21 0 23 78 0 0 chr6 181146700 181146751 -1268491 + AT_rich Low_complexity Low_complexity 1 51 0 2421 62 0 59 chr6 181147016 181147340 -1267902 - AluY SINE Alu -6 305 1 28 0 0 0 chr6 181147985 181148013 -1267229 + AT_rich Low_complexity Low_complexity 1 28 0 2164 173 37 3 chr6 181148348 181148361 -1266881 - L1MC/D LINE L1 -721 6989 6978 2268 186 2 44 chr6 181148361 181148835 -1266407 - L1MA9 LINE L1 -9 6303 5850 2164 173 37 3 chr6 181148835 181149462 -1265780 - L1MC/D LINE L1 -732 6978 6360 * 3098 247 59 47 chr6 181149448 181150116 -1265126 - L1MC/D LINE L1 -3054 4511 3853 13665 161 49 5 chr6 181150116 181152430 -1262812 - Tigger1 DNA MER2_type 0 2418 3 3098 247 59 47 chr6 181152430 181153187 -1262055 - L1MC/D LINE L1 -3712 3853 3107 287 83 0 0 chr6 181153187 181153223 -1262019 - U2 snRNA snRNA -152 36 1 3098 247 59 47 chr6 181153223 181153984 -1261258 - L1MC/D LINE L1 -4458 3107 2258 5049 150 55 2 chr6 181153993 181154978 -1260264 + L1PA16 LINE L1 5128 6160 -6 712 311 20 61 chr6 181154975 181155573 -1259669 - L1M3c LINE L1 -4887 2211 1608 * 1238 221 51 8 chr6 181156693 181157064 -1258178 - L1 LINE L1 -1388 6177 5791 2367 269 66 80 chr6 181157100 181157385 -1257857 - L1 LINE L1 -3890 3675 3387 2203 132 3 0 chr6 181157385 181157695 -1257547 - AluSx SINE Alu -1 311 1 2367 269 66 80 chr6 181157695 181158507 -1256735 - L1 LINE L1 -4178 3387 2789 2306 44 0 44 chr6 181158507 181158861 -1256381 - AluY SINE Alu 0 341 1 2367 269 66 80 chr6 181158861 181159464 -1255778 - L1 LINE L1 -4776 2789 2179 534 332 67 5 chr6 181160454 181160677 -1254565 - L1 LINE L1 -5750 1746 1510 365 54 18 0 chr6 181160677 181160733 -1254509 + (TC)n Simple_repeat Simple_repeat 1 57 0 227 179 104 0 chr6 181160801 181160868 -1254374 - L1 LINE L1 -7089 477 404 257 396 7 7 chr6 181161062 181161201 -1254041 + MIR3 SINE MIR 70 208 0 840 99 21 7 chr6 181162988 181163130 -1252112 + (GAAA)n Simple_repeat Simple_repeat 3 146 0 348 147 93 0 chr6 181166942 181167017 -1248225 - L1MA9 LINE L1 -234 6078 5997 387 259 0 116 chr6 181167037 181167081 -1248161 + L1MA9 LINE L1 6108 6156 -156 3340 77 16 5 chr6 181167081 181167520 -1247722 + MLT2A1 LTR ERVL 1 444 0 387 259 0 116 chr6 181167520 181167664 -1247578 + L1MA9 LINE L1 6156 6274 -38 602 350 28 26 chr6 181168710 181169067 -1246175 - L1ME3A LINE L1 -117 6053 5693 1865 141 52 33 chr6 181169067 181169435 -1245807 + THE1C LTR MaLR 1 375 0 602 350 28 26 chr6 181169435 181169468 -1245774 - L1ME3A LINE L1 -477 5693 5662 276 321 28 9 chr6 181170068 181170174 -1245068 + LTR16A1 LTR ERVL 207 314 -143 228 302 94 0 chr6 181171029 181171135 -1244107 + MIR SINE MIR 55 170 -92 2120 107 0 17 chr6 181171254 181171567 -1243675 - AluSx SINE Alu 0 308 1 1162 303 26 21 chr6 181176404 181177081 -1238161 + L1MEc LINE L1 2092 2732 -3483 * 1332 229 33 31 chr6 181177049 181177438 -1237804 + L1MD3 LINE L1 7666 8055 -9 278 289 0 0 chr6 181177451 181177527 -1237715 + (TA)n Simple_repeat Simple_repeat 2 77 0 317 319 60 16 chr6 181177907 181178089 -1237153 + L1ME LINE L1 5539 5728 -393 1833 222 67 2 chr6 181178112 181178544 -1236698 + MLT1C LTR MaLR 8 467 0 243 273 0 0 chr6 181179048 181179125 -1236117 + L1ME LINE L1 5813 5889 -232 268 309 31 21 chr6 181179513 181179610 -1235632 + Charlie8 DNA MER1_type 92 189 -2228 229 294 11 11 chr6 181180184 181180276 -1234966 - MLT1I LTR MaLR -312 97 6 4533 69 9 0 chr6 181181489 181182071 -1233171 + LTR14C LTR ERVK 1 587 0 438 313 117 46 chr6 181182152 181182519 -1232723 - MLT1I LTR MaLR 0 409 17 4093 98 5 0 chr6 181183421 181183972 -1231270 + MER41A LTR ERV1 1 554 0 1858 136 7 55 chr6 181184023 181184332 -1230910 - AluSx SINE Alu -18 294 1 2324 101 0 3 chr6 181184424 181184721 -1230521 - AluSx SINE Alu -16 296 1 289 341 39 28 chr6 181186227 181186482 -1228760 - L3 LINE CR1 -210 1367 1110 1921 126 75 28 chr6 181186903 181187261 -1227981 + THE1C LTR MaLR 1 375 0 10491 107 34 30 chr6 181187261 181188835 -1226407 + THE1C-int LTR MaLR 1 1580 0 1644 120 56 107 chr6 181188837 181189230 -1226012 + THE1C LTR MaLR 3 375 0 2314 144 49 7 chr6 181192823 181193025 -1222217 - MSTA LTR MaLR 0 428 236 186 43 0 0 chr6 181193025 181193048 -1222194 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 2314 144 49 7 chr6 181193048 181193254 -1221988 - MSTA LTR MaLR -192 236 3 1611 284 99 17 chr6 181193303 181194333 -1220909 - L1ME1 LINE L1 -52 6114 5004 1920 180 45 30 chr6 181195864 181196408 -1218834 + MLT2A2 LTR ERVL 1 554 0 20094 104 8 16 chr6 181196408 181199217 -1216025 + HERVL-A2 LTR ERVL 1 2787 -2867 1774 71 0 0 chr6 181199213 181199437 -1215805 + HERVL-A2 LTR ERVL 3828 4051 -1603 * 2115 151 0 0 chr6 181199551 181199850 -1215392 + AluSx SINE Alu 1 299 -13 351 277 102 15 chr6 181200358 181200495 -1214747 + L1ME LINE L1 637 785 -5611 802 294 73 39 chr6 181200527 181201324 -1213918 + L1ME LINE L1 734 1514 -4892 1927 193 130 5 chr6 181201330 181201904 -1213338 + L1MB8 LINE L1 5215 5856 -328 1882 123 36 66 chr6 181201910 181202275 -1212967 - THE1C LTR MaLR -21 354 1 1294 206 45 3 chr6 181202275 181202561 -1212681 + L1MB8 LINE L1 5872 6169 -9 338 207 28 151 chr6 181203868 181204119 -1211123 - HAL1 LINE L1 -1134 1373 1154 236 114 45 0 chr6 181204191 181204235 -1211007 + (CATA)n Simple_repeat Simple_repeat 3 48 0 782 93 0 8 chr6 181204617 181204735 -1210507 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 476 320 92 39 chr6 181204737 181205118 -1210124 - HAL1 LINE L1 -1689 818 418 2157 119 76 15 chr6 181205470 181205813 -1209429 + THE1B LTR MaLR 1 364 0 2288 103 0 0 chr6 181205813 181206125 -1209117 + THE1B-int LTR MaLR 1 312 -1268 431 273 13 20 chr6 181206304 181206454 -1208788 - HAL1 LINE L1 -2265 242 94 248 230 106 35 chr6 181207696 181207809 -1207433 + MER63 DNA MER1_type 6 752 -84 2216 203 165 22 chr6 181207932 181208568 -1206674 - MER50 LTR ERV1 0 734 8 1442 190 100 43 chr6 181208570 181208939 -1206303 - MLT2C2 LTR ERVL -72 392 3 1484 100 66 7 chr6 181209000 181209667 -1205575 + MER4D LTR ERV1 1 761 -5 10883 147 40 34 chr6 181209672 181211881 -1203361 + MER4D-int LTR ERV1 1 2358 -4400 2053 125 27 0 chr6 181211881 181212178 -1203064 + AluSx SINE Alu 1 305 -7 10883 147 40 34 chr6 181212178 181213606 -1201636 + MER4D-int LTR ERV1 2358 3776 -2982 206 204 10 163 chr6 181213936 181213965 -1201277 + MIR SINE MIR 71 103 -159 2102 105 20 3 chr6 181213965 181214269 -1200973 - AluY SINE Alu 0 311 3 206 204 10 163 chr6 181214269 181214337 -1200905 + MIR SINE MIR 103 153 -109 1914 248 103 55 chr6 181214388 181215176 -1200066 + LTR1B LTR ERV1 1 826 0 20526 156 14 18 chr6 181215304 181221607 -1193635 + HUERS-P2 LTR ERV1 85 6602 -489 1851 185 36 0 chr6 181221615 181221950 -1193292 + HUERS-P2 LTR ERV1 6745 7091 0 883 233 116 58 chr6 181221958 181222319 -1192923 + LTR1B LTR ERV1 2 383 -443 272 122 0 0 chr6 181222331 181222380 -1192862 + LTR1 LTR ERV1 347 395 -390 1118 217 102 77 chr6 181222390 181222782 -1192460 + LTR1B LTR ERV1 333 734 -92 1986 160 22 33 chr6 181222782 181223150 -1192092 + THE1B LTR MaLR 1 364 0 2157 199 69 14 chr6 181227291 181227784 -1187458 - MLT2B1 LTR ERVL 0 520 1 20048 157 43 16 chr6 181227966 181228049 -1187193 + L1MA2 LINE L1 19 98 -7625 1682 181 7 0 chr6 181228049 181228359 -1186883 - AluSx SINE Alu 0 312 1 20048 157 43 16 chr6 181228359 181232586 -1182656 + L1MA2 LINE L1 98 4631 -3092 2087 90 0 20 chr6 181232586 181232885 -1182357 + AluY SINE Alu 1 293 -18 20048 157 43 16 chr6 181232885 181236036 -1179206 + L1MA2 LINE L1 4631 7696 -27 740 79 94 8 chr6 181236038 181236165 -1179077 + L1 LINE L1 4205 4342 -1804 325 238 36 24 chr6 181237232 181237316 -1177926 + MER58A DNA MER1_type 7 91 -16 424 227 101 8 chr6 181237537 181237656 -1177586 - MIR SINE MIR -113 149 20 249 139 0 0 chr6 181237753 181237796 -1177446 + (A)n Simple_repeat Simple_repeat 1 43 0 25 0 0 0 chr6 181238878 181238903 -1176339 + AT_rich Low_complexity Low_complexity 1 25 0 4387 153 58 14 chr6 181240336 181241127 -1174115 - LTR1B LTR ERV1 0 826 1 21 0 0 0 chr6 181241332 181241353 -1173889 + AT_rich Low_complexity Low_complexity 1 21 0 321 263 108 56 chr6 181242275 181242488 -1172754 + L2 LINE L2 3090 3313 0 2524 108 8 0 chr6 181243693 181244044 -1171198 + THE1A LTR MaLR 1 354 -1 2844 134 53 28 chr6 181244293 181244786 -1170456 + MER4B LTR ERV1 1 505 -105 287 95 0 24 chr6 181245093 181245135 -1170107 - L1PA6 LINE L1 -942 5204 5164 * 4788 48 11 39 chr6 181245128 181245821 -1169421 + L1PA6 LINE L1 5208 5880 -274 625 141 0 0 chr6 181245821 181245913 -1169329 + MER4A LTR ERV1 573 664 0 309 167 2 5 chr6 181245913 181245968 -1169274 + MLT1A1 LTR MaLR 283 362 -28 539 257 45 40 chr6 181245997 181246199 -1169043 - L1ME LINE L1 -3499 2581 2379 227 250 0 26 chr6 181246339 181246415 -1168827 - L1ME LINE L1 -3884 2198 2125 396 328 16 38 chr6 181246426 181246609 -1168633 - L1ME LINE L1 -4110 2151 1973 775 196 0 7 chr6 181246820 181246963 -1168279 - FLAM_A SINE Alu 0 142 1 806 278 128 58 chr6 181247068 181248086 -1167156 - L1ME LINE L1 -4648 1613 465 1481 121 28 0 chr6 181248937 181249152 -1166090 + L1PA10 LINE L1 5947 6167 -1 819 268 132 17 chr6 181249243 181249903 -1165339 + Charlie2 DNA MER1_type 2060 2795 -67 595 237 29 0 chr6 181250558 181250697 -1164545 - L1MA10 LINE L1 -12 6322 6180 270 115 0 0 chr6 181250704 181250756 -1164486 + (ATG)n Simple_repeat Simple_repeat 1 52 0 3373 203 45 31 chr6 181250772 181251581 -1163661 - L1MB1 LINE L1 -74 6094 5275 23 0 0 0 chr6 181252153 181252176 -1163066 + AT_rich Low_complexity Low_complexity 1 23 0 642 293 42 88 chr6 181252447 181252901 -1162341 - L2 LINE L2 -4 3309 2877 924 272 177 35 chr6 181252931 181253755 -1161487 - L2 LINE L2 -653 2661 1646 657 222 117 39 chr6 181254018 181254346 -1160896 + MLT1F1 LTR MaLR 117 564 -3 191 313 60 12 chr6 181256128 181256211 -1159031 - L3 LINE CR1 -85 1492 1406 628 285 73 27 chr6 181258059 181258428 -1156814 - MLT1B LTR MaLR -4 386 1 596 339 154 20 chr6 181258561 181259731 -1155511 + L2 LINE L2 671 1996 -1318 3134 132 9 83 chr6 181261218 181261356 -1153886 - MER1A DNA MER1_type -2173 527 380 1953 103 27 7 chr6 181261356 181261648 -1153594 - AluSq SINE Alu -15 298 1 3134 132 9 83 chr6 181261648 181262078 -1153164 - MER1A DNA MER1_type -2320 380 1 22 0 0 0 chr6 181266431 181266453 -1148789 + AT_rich Low_complexity Low_complexity 1 22 0 247 312 26 39 chr6 181267560 181267714 -1147528 + C-rich Low_complexity Low_complexity 3 154 0 222 293 60 38 chr6 181267791 181267924 -1147318 + L2 LINE L2 3110 3245 -68 22 88 0 0 chr6 181268756 181268813 -1146429 + AT_rich Low_complexity Low_complexity 1 57 0 2349 82 0 0 chr6 181268979 181269285 -1145957 + AluSx SINE Alu 1 306 0 257 276 31 51 chr6 181269414 181269512 -1145730 - MER5A DNA MER1_type -87 102 7 186 358 41 8 chr6 181270366 181270489 -1144753 - MIR SINE MIR -62 146 20 460 303 103 11 chr6 181271747 181271932 -1143310 + MIR SINE MIR 47 248 -14 325 288 28 28 chr6 181272176 181272353 -1142889 + C-rich Low_complexity Low_complexity 3 179 0 303 358 80 30 chr6 181272578 181272779 -1142463 + HAL1b LINE L1 229 439 -909 242 278 25 49 chr6 181272867 181273029 -1142213 + HAL1b LINE L1 581 738 -610 243 358 109 14 chr6 181273078 181273371 -1141871 + HAL1b LINE L1 826 1146 -202 377 307 95 15 chr6 181273401 181273538 -1141704 + HAL1b LINE L1 1198 1345 -3 212 229 0 0 chr6 181275629 181275677 -1139565 - L2 LINE L2 0 3313 3266 2131 127 14 11 chr6 181276500 181276854 -1138388 - THE1A LTR MaLR 0 355 1 10937 90 12 32 chr6 181276854 181278006 -1137236 - THE1A-int LTR MaLR 0 1580 468 7054 44 1 3 chr6 181278006 181279411 -1135831 + L1PA6 LINE L1 4751 6153 -1 10937 90 12 32 chr6 181279411 181279870 -1135372 - THE1A-int LTR MaLR -1112 468 1 2240 124 8 6 chr6 181279870 181280224 -1135018 - THE1A LTR MaLR 0 355 1 2525 62 16 0 chr6 181282725 181283031 -1132211 + AluY SINE Alu 1 311 0 302 281 137 7 chr6 181285528 181285681 -1129561 - L2 LINE L2 -509 2805 2633 2228 135 0 0 chr6 181286103 181286399 -1128843 - AluSx SINE Alu -16 296 1 1198 150 0 109 chr6 181388287 181388367 -1026875 + AluJb SINE Alu 68 155 -157 1733 148 35 29 chr6 181388367 181388677 -1026565 + AluSx SINE Alu 1 312 0 1198 150 0 109 chr6 181388677 181388862 -1026380 + AluJb SINE Alu 155 304 -8 1827 171 7 16 chr6 181388873 181389178 -1026064 + AluSx SINE Alu 1 302 -10 1786 109 39 3 chr6 181389180 181389464 -1025778 + AluSq SINE Alu 1 294 -19 352 272 152 33 chr6 181389465 181389649 -1025593 - L1MC4a LINE L1 -1495 6313 6108 1634 171 3 37 chr6 181389770 181389933 -1025309 - AluJo SINE Alu -21 291 141 2097 141 0 7 chr6 181389933 181390239 -1025003 - AluSx SINE Alu -8 304 1 1634 171 3 37 chr6 181390239 181390374 -1024868 - AluJo SINE Alu -171 141 3 313 213 101 41 chr6 181390417 181390586 -1024656 - Charlie7 DNA MER1_type -26 2586 2408 2120 114 3 20 chr6 181390602 181390901 -1024341 + AluSq SINE Alu 1 294 -19 985 153 0 0 chr6 181390901 181391045 -1024197 + AluSg/x SINE Alu 133 276 -34 2146 104 31 0 chr6 181391319 181391607 -1023635 + AluSg SINE Alu 1 297 -13 1988 176 77 17 chr6 181391837 181392241 -1023001 - MSTA LTR MaLR 0 428 1 285 284 15 0 chr6 181392248 181392315 -1022927 - L2 LINE L2 -69 3203 3136 298 207 73 0 chr6 181392768 181392850 -1022392 + L1PA8 LINE L1 5946 6033 -139 * 330 214 61 10 chr6 181392845 181392943 -1022299 + L1PA8 LINE L1 5946 6048 -124 315 195 73 0 chr6 181392922 181393004 -1022238 + L1PA8 LINE L1 5946 6033 -139 * 328 195 73 0 chr6 181392999 181393081 -1022161 + L1PA8 LINE L1 5946 6033 -139 309 224 61 10 chr6 181393076 181393174 -1022068 + L1PA8 LINE L1 5946 6048 -124 * 327 195 73 0 chr6 181393153 181393235 -1022007 + L1PA8 LINE L1 5946 6033 -139 * 328 171 85 12 chr6 181393230 181393312 -1021930 + L1PA8 LINE L1 5946 6033 -139 * 346 183 73 0 chr6 181393307 181393389 -1021853 + L1PA8 LINE L1 5946 6033 -139 * 368 194 61 10 chr6 181393384 181393482 -1021760 + L1PA8 LINE L1 5946 6048 -124 346 214 61 10 chr6 181393461 181393559 -1021683 + L1PA8 LINE L1 5946 6048 -124 * 363 204 61 10 chr6 181393538 181393636 -1021606 + L1PA8 LINE L1 5946 6048 -124 350 183 73 0 chr6 181393615 181393697 -1021545 + L1PA8 LINE L1 5946 6033 -139 * 334 195 73 0 chr6 181393692 181393774 -1021468 + L1PA8 LINE L1 5946 6033 -139 * 334 195 73 0 chr6 181393769 181393851 -1021391 + L1PA8 LINE L1 5946 6033 -139 289 210 74 0 chr6 181393846 181393927 -1021315 + L1PA8 LINE L1 5946 6032 -140 * 339 224 61 10 chr6 181393923 181394021 -1021221 + L1PA8 LINE L1 5946 6048 -124 * 347 214 61 10 chr6 181394000 181394098 -1021144 + L1PA8 LINE L1 5946 6048 -124 * 348 183 73 0 chr6 181394077 181394159 -1021083 + L1PA8 LINE L1 5946 6033 -139 328 171 85 12 chr6 181394283 181394365 -1020877 - L1PA8 LINE L1 -139 6033 5946 324 195 73 0 chr6 181394360 181394442 -1020800 - L1PA8 LINE L1 -139 6033 5946 * 346 183 73 0 chr6 181394437 181394519 -1020723 - L1PA8 LINE L1 -139 6033 5946 314 198 86 0 chr6 181394514 181394595 -1020647 - L1PA8 LINE L1 -139 6033 5946 * 357 204 61 10 chr6 181394574 181394672 -1020570 - L1PA8 LINE L1 -124 6048 5946 315 195 73 0 chr6 181394667 181394749 -1020493 - L1PA8 LINE L1 -139 6033 5946 * 357 204 61 10 chr6 181394728 181394826 -1020416 - L1PA8 LINE L1 -124 6048 5946 341 183 73 0 chr6 181394821 181394903 -1020339 - L1PA8 LINE L1 -139 6033 5946 * 357 204 61 10 chr6 181394882 181394980 -1020262 - L1PA8 LINE L1 -124 6048 5946 341 183 73 0 chr6 181394975 181395057 -1020185 - L1PA8 LINE L1 -139 6033 5946 * 348 214 61 10 chr6 181395036 181395134 -1020108 - L1PA8 LINE L1 -124 6048 5946 337 214 61 10 chr6 181395113 181395211 -1020031 - L1PA8 LINE L1 -124 6048 5946 * 366 194 61 10 chr6 181395190 181395288 -1019954 - L1PA8 LINE L1 -124 6048 5946 337 214 61 10 chr6 181395267 181395365 -1019877 - L1PA8 LINE L1 -124 6048 5946 * 324 195 73 0 chr6 181395360 181395442 -1019800 - L1PA8 LINE L1 -139 6033 5946 * 350 183 73 0 chr6 181395437 181395519 -1019723 - L1PA8 LINE L1 -139 6033 5946 341 183 73 0 chr6 181395514 181395596 -1019646 - L1PA8 LINE L1 -139 6033 5946 * 337 214 61 10 chr6 181395575 181395673 -1019569 - L1PA8 LINE L1 -124 6048 5946 * 333 195 73 0 chr6 181395668 181395750 -1019492 - L1PA8 LINE L1 -139 6033 5946 * 357 214 61 10 chr6 181395729 181395827 -1019415 - L1PA8 LINE L1 -124 6048 5946 354 204 61 10 chr6 181395806 181395904 -1019338 - L1PA8 LINE L1 -124 6048 5946 * 328 224 61 10 chr6 181395883 181395981 -1019261 - L1PA8 LINE L1 -124 6048 5946 * 334 195 73 0 chr6 181395976 181396058 -1019184 - L1PA8 LINE L1 -139 6033 5946 315 195 73 0 chr6 181396053 181396135 -1019107 - L1PA8 LINE L1 -139 6033 5946 * 330 214 61 10 chr6 181396114 181396212 -1019030 - L1PA8 LINE L1 -124 6048 5946 363 171 73 0 chr6 181396372 181396454 -1018788 - L1PA8 LINE L1 -139 6033 5946 * 375 194 61 10 chr6 181396433 181396531 -1018711 - L1PA8 LINE L1 -124 6048 5946 375 194 61 10 chr6 181396510 181396608 -1018634 - L1PA8 LINE L1 -124 6048 5946 346 214 61 10 chr6 181396587 181396685 -1018557 - L1PA8 LINE L1 -124 6048 5946 * 327 185 86 0 chr6 181396680 181396761 -1018481 - L1PA8 LINE L1 -139 6033 5946 * 350 183 73 0 chr6 181396756 181396838 -1018404 - L1PA8 LINE L1 -139 6033 5946 * 356 196 72 10 chr6 181396817 181396914 -1018328 - L1PA8 LINE L1 -124 6048 5946 343 194 71 20 chr6 181396893 181396991 -1018251 - L1PA8 LINE L1 -124 6048 5946 * 346 183 73 0 chr6 181396986 181397068 -1018174 - L1PA8 LINE L1 -139 6033 5946 334 195 73 0 chr6 181397063 181397145 -1018097 - L1PA8 LINE L1 -139 6033 5946 * 320 207 73 0 chr6 181397140 181397222 -1018020 - L1PA8 LINE L1 -139 6033 5946 * 327 185 86 0 chr6 181397217 181397298 -1017944 - L1PA8 LINE L1 -139 6033 5946 * 334 195 73 0 chr6 181397293 181397375 -1017867 - L1PA8 LINE L1 -139 6033 5946 300 206 76 22 chr6 181397359 181397451 -1017791 - L1PA10 LINE L1 -126 6042 5946 * 375 194 61 10 chr6 181397430 181397528 -1017714 - L1PA8 LINE L1 -124 6048 5946 363 204 61 10 chr6 181397507 181397605 -1017637 - L1PA8 LINE L1 -124 6048 5946 * 318 224 61 10 chr6 181397584 181397682 -1017560 - L1PA8 LINE L1 -124 6048 5946 * 350 184 71 20 chr6 181397661 181397759 -1017483 - L1PA8 LINE L1 -124 6048 5946 314 198 86 0 chr6 181397754 181397835 -1017407 - L1PA8 LINE L1 -139 6033 5946 * 363 171 73 0 chr6 181397830 181397912 -1017330 - L1PA8 LINE L1 -139 6033 5946 * 375 194 61 10 chr6 181397891 181397989 -1017253 - L1PA8 LINE L1 -124 6048 5946 343 214 61 10 chr6 181397968 181398066 -1017176 - L1PA8 LINE L1 -124 6048 5946 * 321 185 86 0 chr6 181398061 181398142 -1017100 - L1PA8 LINE L1 -139 6033 5946 * 316 224 61 10 chr6 181398121 181398219 -1017023 - L1PA8 LINE L1 -124 6048 5946 * 363 171 73 0 chr6 181398214 181398296 -1016946 - L1PA8 LINE L1 -139 6033 5946 342 214 61 10 chr6 181398275 181398373 -1016869 - L1PA8 LINE L1 -124 6048 5946 * 334 224 61 10 chr6 181398352 181398450 -1016792 - L1PA8 LINE L1 -124 6048 5946 * 353 192 61 20 chr6 181398429 181398528 -1016714 - L1PA8 LINE L1 -124 6048 5946 * 354 204 61 10 chr6 181398507 181398605 -1016637 - L1PA8 LINE L1 -124 6048 5946 327 214 61 10 chr6 181398584 181398682 -1016560 - L1PA8 LINE L1 -124 6048 5946 * 350 214 61 10 chr6 181398661 181398759 -1016483 - L1PA8 LINE L1 -124 6048 5946 2217 105 8 14 chr6 181398770 181399132 -1016110 - L1PA8A LINE L1 -120 6011 5646 1937 146 10 10 chr6 181399854 181400162 -1015080 - AluSx SINE Alu -2 310 3 1795 134 0 11 chr6 181400473 181400735 -1014507 - AluSq SINE Alu -9 304 46 476 151 27 0 chr6 181400735 181400808 -1014434 - AluJ/FLAM SINE Alu -236 76 2 225 0 0 0 chr6 181401013 181401038 -1014204 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1873 148 0 4 chr6 181401039 181401316 -1013926 - AluSq SINE Alu -33 280 5 1511 175 88 22 chr6 181402456 181402776 -1012466 + MSTD LTR MaLR 1 341 -55 670 170 10 23 chr6 181402777 181402988 -1012254 + CT-rich Low_complexity Low_complexity 1 208 0 335 182 0 0 chr6 181402988 181403054 -1012188 + MSTD LTR MaLR 330 395 -1 302 224 122 20 chr6 181403362 181403460 -1011782 - L1MC5 LINE L1 -55 7906 7799 759 204 42 123 chr6 181403537 181403870 -1011372 - L1MC4 LINE L1 -938 7080 6718 180 0 0 0 chr6 181404681 181404701 -1010541 + (A)n Simple_repeat Simple_repeat 1 20 0 1910 76 0 0 chr6 181405593 181405817 -1009425 - AluSq SINE Alu -87 226 3 291 28 0 0 chr6 181406141 181406177 -1009065 + (TG)n Simple_repeat Simple_repeat 2 37 0 1682 201 0 0 chr6 181406178 181406462 -1008780 - AluJb SINE Alu -28 284 1 1063 151 0 0 chr6 181406804 181406956 -1008286 - AluJb SINE Alu -38 274 123 531 157 9 65 chr6 181406960 181407068 -1008174 - MER8 DNA MER2_type -134 105 4 597 175 29 0 chr6 181407288 181407391 -1007851 + U6 snRNA snRNA 2 107 0 299 277 15 57 chr6 181407432 181407556 -1007686 - L1ME LINE L1 -428 5693 5586 548 171 65 41 chr6 181407556 181407679 -1007563 + FLAM_C SINE Alu 4 129 -4 299 277 15 57 chr6 181407679 181407779 -1007463 - L1ME LINE L1 -535 5586 5483 2252 102 7 0 chr6 181407841 181408135 -1007107 - AluSg SINE Alu -14 296 1 1518 201 29 29 chr6 181408186 181408495 -1006747 - AluJo SINE Alu -1 311 3 32 26 0 0 chr6 181408565 181408604 -1006638 + AT_rich Low_complexity Low_complexity 1 39 0 315 292 17 17 chr6 181408746 181408866 -1006376 - L1MC/D LINE L1 -1966 5842 5723 1340 224 10 33 chr6 181408904 181409207 -1006035 + AluJo SINE Alu 1 296 -16 637 217 0 0 chr6 181409209 181409329 -1005913 + AluJb SINE Alu 185 304 -8 21 0 0 0 chr6 181409454 181409475 -1005767 + AT_rich Low_complexity Low_complexity 1 21 0 207 203 47 31 chr6 181409708 181409772 -1005470 + (GGGTG)n Simple_repeat Simple_repeat 1 65 0 256 291 123 62 chr6 181409992 181410171 -1005071 - MIR SINE MIR -64 198 9 7013 115 24 16 chr6 181410226 181411289 -1003953 - MER11C LTR ERVK 0 1071 1 2546 232 79 41 chr6 181411306 181411590 -1003652 - MER21B LTR ERV1 -58 805 533 1833 171 0 10 chr6 181411590 181411894 -1003348 - AluJo SINE Alu -11 301 1 2546 232 79 41 chr6 181411894 181412204 -1003038 - MER21B LTR ERV1 -330 533 173 2059 146 0 3 chr6 181412204 181412498 -1002744 + AluSq SINE Alu 1 293 -20 2546 232 79 41 chr6 181412498 181412660 -1002582 - MER21B LTR ERV1 -690 173 19 293 307 0 0 chr6 181412682 181412757 -1002485 - MER21B LTR ERV1 -773 90 16 1668 205 0 7 chr6 181412757 181413054 -1002188 - AluJo SINE Alu -13 299 5 1453 191 14 56 chr6 181413057 181413414 -1001828 + MLT1D LTR MaLR 162 503 -2 1622 196 10 14 chr6 181413435 181413562 -1001680 + AluJb SINE Alu 10 136 -176 2158 100 35 0 chr6 181413562 181413851 -1001391 + AluSg1 SINE Alu 1 299 -10 1622 196 10 14 chr6 181413851 181414014 -1001228 + AluJb SINE Alu 136 299 -13 1476 261 82 32 chr6 181414014 181414622 -1000620 - L2 LINE L2 -216 3097 2458 713 218 0 0 chr6 181414721 181414854 -1000388 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr6 181414854 181414881 -1000361 + AT_rich Low_complexity Low_complexity 1 27 0 1311 260 7 3 chr6 181414881 181415177 -1000065 + AluJo SINE Alu 2 298 -4 297 268 8 39 chr6 181415322 181415449 -999793 + LTR37A LTR ERV1 240 362 -64 2187 139 0 3 chr6 181415627 181415936 -999306 - AluSq SINE Alu -5 308 1 1628 188 20 23 chr6 181416238 181416541 -998701 - AluJo SINE Alu -10 302 1 2641 194 37 34 chr6 181416562 181417179 -998063 - L1MB8 LINE L1 -5 6173 5555 707 193 0 0 chr6 181417179 181417293 -997949 + FLAM_A SINE Alu 1 114 -19 473 166 0 94 chr6 181417330 181417415 -997827 - L1MB8 LINE L1 -614 5570 5508 1654 188 10 7 chr6 181417415 181417707 -997535 - AluJb SINE Alu -19 293 1 473 166 0 94 chr6 181417707 181417738 -997504 - L1MB8 LINE L1 -676 5508 5476 636 193 0 133 chr6 181417797 181417857 -997385 + AluJo SINE Alu 24 90 -222 264 111 0 0 chr6 181417857 181417902 -997340 + (TTG)n Simple_repeat Simple_repeat 1 45 0 1855 141 22 4 chr6 181417904 181418174 -997068 - AluSx SINE Alu -37 275 1 636 193 0 133 chr6 181418174 181418276 -996966 + AluJo SINE Alu 91 167 -145 1448 161 124 25 chr6 181418286 181418560 -996682 - AluJo SINE Alu -1 301 1 1421 238 0 14 chr6 181418813 181419107 -996135 - AluJo SINE Alu -18 294 5 329 192 26 135 chr6 181419111 181419267 -995975 - MLT1D LTR MaLR -295 210 72 226 269 129 11 chr6 181419331 181419424 -995818 - L2 LINE L2 -27 3286 3183 260 297 137 51 chr6 181419451 181419819 -995423 - L2 LINE L2 -211 3061 2671 180 329 59 7 chr6 181419869 181420021 -995221 - L2 LINE L2 -1591 1723 1564 1698 185 0 16 chr6 181420041 181420349 -994893 - AluJb SINE Alu -9 303 1 2347 98 3 0 chr6 181420435 181420731 -994511 - AluSp SINE Alu -16 297 1 249 33 0 0 chr6 181420757 181420787 -994455 + (TA)n Simple_repeat Simple_repeat 1 30 0 1890 151 0 3 chr6 181420789 181421074 -994168 - AluJb SINE Alu -18 294 11 2841 123 9 2 chr6 181421439 181421871 -993371 + MER1A DNA MER1_type 56 490 -39 692 226 0 0 chr6 181421884 181422008 -993234 - FLAM_C SINE Alu -18 125 2 678 139 28 0 chr6 181422042 181422150 -993092 + AluJb SINE Alu 194 304 -8 257 394 59 24 chr6 181422825 181422995 -992247 - MIR SINE MIR -75 187 12 2379 244 47 37 chr6 181423100 181423345 -991897 - MER21B LTR ERV1 -112 751 510 1694 205 0 3 chr6 181423345 181423648 -991594 - AluJo SINE Alu -10 302 1 2379 244 47 37 chr6 181423648 181423718 -991524 - MER21B LTR ERV1 -353 510 442 1628 182 3 49 chr6 181423718 181424025 -991217 + AluJb SINE Alu 2 294 -18 2379 244 47 37 chr6 181424025 181424434 -990808 - MER21B LTR ERV1 -421 442 19 326 212 10 91 chr6 181424432 181424531 -990711 - MER21B LTR ERV1 -757 106 16 * 1137 186 0 117 chr6 181424531 181424821 -990421 - AluJb SINE Alu -13 299 44 493 217 0 0 chr6 181424823 181424906 -990336 - FLAM_A SINE Alu -25 117 35 2249 150 64 21 chr6 181425188 181425609 -989633 + MER1A DNA MER1_type 1 439 -90 670 236 57 6 chr6 181425863 181426020 -989222 - AluJo SINE Alu -139 173 9 1064 197 0 5 chr6 181426599 181426792 -988450 - AluJb SINE Alu -4 308 117 373 216 39 49 chr6 181426792 181426894 -988348 - MER8 DNA MER2_type -136 103 3 1711 173 0 13 chr6 181427005 181427305 -987937 + AluJo SINE Alu 1 296 -16 468 234 7 71 chr6 181427541 181427682 -987560 + AluJo SINE Alu 11 142 -170 244 256 12 24 chr6 181427682 181427764 -987478 - L1ME LINE L1 -558 5563 5483 1465 194 42 11 chr6 181427898 181428182 -987060 - AluJb SINE Alu -19 293 1 386 196 0 135 chr6 181428185 181428333 -986909 + LTR41 LTR ERVL 640 767 -6 2267 145 64 21 chr6 181428604 181429025 -986217 + MER1A DNA MER1_type 1 439 -90 670 236 57 6 chr6 181429278 181429435 -985807 - AluJo SINE Alu -139 173 9 1089 192 0 5 chr6 181430013 181430206 -985036 - AluJb SINE Alu -4 308 117 390 206 39 49 chr6 181430206 181430308 -984934 - MER8 DNA MER2_type -136 103 3 1666 180 0 13 chr6 181430419 181430719 -984523 + AluJo SINE Alu 1 296 -16 482 227 7 71 chr6 181430955 181431096 -984146 + AluJo SINE Alu 11 142 -170 251 264 11 22 chr6 181431096 181431187 -984055 - L1ME LINE L1 -558 5563 5474 1411 204 42 11 chr6 181431312 181431596 -983646 - AluJb SINE Alu -19 293 1 375 203 0 135 chr6 181431599 181431747 -983495 + LTR41 LTR ERVL 640 767 -6 2300 141 67 19 chr6 181432018 181432437 -982805 + MER1A DNA MER1_type 1 439 -90 2208 110 0 0 chr6 181436845 181437144 -978098 + AluSg SINE Alu 1 299 -11 458 155 0 0 chr6 181440225 181440309 -974933 - AluSq SINE Alu 0 313 230 937 154 20 7 chr6 181440311 181440460 -974782 - AluSq SINE Alu -162 151 1 905 254 21 15 chr6 181440463 181440898 -974344 - L1M2 LINE L1 -4226 2563 2037 2152 127 3 22 chr6 181440898 181441213 -974029 - AluSg SINE Alu -1 309 1 905 254 21 15 chr6 181441213 181441306 -973936 - L1M2 LINE L1 -4752 2037 1946 707 158 0 0 chr6 181441321 181441422 -973820 - FLAM_C SINE Alu -40 103 3 729 153 0 0 chr6 181441424 181441535 -973707 + FLAM_C SINE Alu 27 137 -6 1899 109 3 65 chr6 181441537 181441830 -973412 + AluSx SINE Alu 37 311 -1 271 298 38 76 chr6 181442193 181442318 -972924 + L2 LINE L2 3084 3197 -116 2275 113 0 0 chr6 181442318 181442618 -972624 + AluSq SINE Alu 1 300 -13 271 298 38 76 chr6 181442618 181442730 -972512 + L2 LINE L2 3197 3312 -1 1996 133 0 0 chr6 181443162 181443432 -971810 + AluSx SINE Alu 1 270 -42 359 246 109 36 chr6 181443556 181443666 -971576 + L2 LINE L2 3195 3312 -1 21 36 0 0 chr6 181444053 181444081 -971161 + AT_rich Low_complexity Low_complexity 1 28 0 1375 208 35 32 chr6 181444208 181444977 -970265 - L1M4c LINE L1 -4071 2313 1451 932 139 20 25 chr6 181444978 181445179 -970063 - L1MA5 LINE L1 0 6300 6101 321 257 87 132 chr6 181445223 181445639 -969603 - L1M4 LINE L1 -2943 3203 2807 1951 169 13 0 chr6 181446343 181446644 -968598 - AluJb SINE Alu -7 305 1 463 384 32 24 chr6 181446807 181447366 -967876 - L2 LINE L2 -2 3270 2707 * 526 263 0 8 chr6 181447364 181447482 -967760 - L2 LINE L2 0 3313 3197 338 161 55 41 chr6 181449373 181449655 -965587 + (TAGA)n Simple_repeat Simple_repeat 1 285 0 236 245 0 0 chr6 181449978 181450027 -965215 + CT-rich Low_complexity Low_complexity 3 51 0 336 254 66 0 chr6 181451569 181451691 -963551 - L1ME1 LINE L1 -18 6148 6019 1198 259 64 11 chr6 181451867 181452415 -962827 - L1ME1 LINE L1 -601 5758 5171 27 73 0 0 chr6 181452461 181452516 -962726 + AT_rich Low_complexity Low_complexity 1 55 0 181 259 210 62 chr6 181452591 181452753 -962489 + L2 LINE L2 2711 2896 -418 2568 44 7 0 chr6 181452878 181453175 -962067 - AluY SINE Alu -12 299 1 3343 155 38 8 chr6 181453853 181454466 -960776 + MER39B LTR ERV1 1 631 -22 538 224 6 6 chr6 181454938 181455112 -960130 + GA-rich Low_complexity Low_complexity 2 175 0 617 297 99 52 chr6 181455554 181456129 -959113 + L1MC4a LINE L1 5936 6530 -1278 300 315 55 31 chr6 181456299 181456426 -958816 + L1MD3 LINE L1 6539 6668 -1327 228 299 0 13 chr6 181456962 181457039 -958203 + L1MD3 LINE L1 6545 6620 -1375 1654 240 67 21 chr6 181457114 181457551 -957691 + L1MC3 LINE L1 6503 6969 -816 327 65 0 0 chr6 181457551 181457597 -957645 + (CA)n Simple_repeat Simple_repeat 1 46 0 1654 240 67 21 chr6 181457597 181457680 -957562 + L1MC3 LINE L1 6969 7047 -738 1153 94 0 0 chr6 181457685 181457863 -957379 + AluY SINE Alu 134 311 0 559 230 75 52 chr6 181457867 181457938 -957304 + L1MD3 LINE L1 7068 7136 -859 2201 121 23 3 chr6 181457938 181458245 -956997 + AluSq SINE Alu 1 313 0 559 230 75 52 chr6 181458245 181458386 -956856 + L1MD3 LINE L1 7136 7285 -710 265 213 263 0 chr6 181458388 181458468 -956774 + MLT1F1 LTR MaLR 25 125 -442 1141 256 24 6 chr6 181458468 181458808 -956434 + L1MD3 LINE L1 7406 7751 -244 390 277 8 8 chr6 181460361 181460491 -954751 + L1MD3 LINE L1 7832 7961 -34 24 32 0 0 chr6 181460491 181460522 -954720 + AT_rich Low_complexity Low_complexity 1 31 0 2381 91 0 0 chr6 181460533 181460829 -954413 + AluSg SINE Alu 2 297 -13 331 140 0 0 chr6 181461059 181461109 -954133 - Alu SINE Alu -252 50 1 842 180 248 12 chr6 181461575 181461898 -953344 - Charlie1a DNA MER1_type 0 1455 1057 1334 161 0 14 chr6 181461933 181462151 -953091 - AluJb SINE Alu -11 301 87 1157 138 185 4 chr6 181462155 181462415 -952827 - Charlie1a DNA MER1_type -541 914 608 1167 210 216 14 chr6 181464855 181465057 -950185 - Charlie1a DNA MER1_type -2249 512 352 1917 148 0 3 chr6 181465057 181465354 -949888 - AluJb SINE Alu -16 296 1 1167 210 216 14 chr6 181465354 181465522 -949720 - Charlie1a DNA MER1_type -2409 352 67 26 0 0 0 chr6 181465627 181465653 -949589 + AT_rich Low_complexity Low_complexity 1 26 0 1824 126 13 35 chr6 181466041 181466351 -948891 - AluSc SINE Alu -6 303 1 1694 94 35 35 chr6 181466837 181467124 -948118 - AluSx SINE Alu -23 289 3 242 29 29 0 chr6 181467195 181467230 -948012 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1972 101 4 0 chr6 181468671 181468974 -946268 - AluSg SINE Alu 0 304 1 400 288 157 20 chr6 181469822 181470020 -945222 - L1ME4a LINE L1 -31 6090 5866 1177 206 128 83 chr6 181470385 181470852 -944390 - MLT1H LTR MaLR 0 549 62 2276 156 17 26 chr6 181472397 181472582 -942660 - L1PA16 LINE L1 -6 6160 5975 324 0 0 0 chr6 181472582 181472618 -942624 + (TG)n Simple_repeat Simple_repeat 1 36 0 1615 147 30 0 chr6 181472618 181472883 -942359 - AluSg SINE Alu -33 277 5 2276 156 17 26 chr6 181472883 181473112 -942130 - L1PA16 LINE L1 -189 5977 5749 203 345 19 78 chr6 181473185 181473391 -941851 - L2 LINE L2 -1560 1754 1561 335 277 247 6 chr6 181473753 181473919 -941323 + MIR SINE MIR 51 256 -6 199 154 128 0 chr6 181474683 181474722 -940520 + MIR SINE MIR 211 254 -8 4591 130 10 1 chr6 181474951 181475661 -939581 - L1PB1 LINE L1 0 6151 5436 203 231 231 0 chr6 181476116 181476168 -939074 + MIR SINE MIR 88 151 -111 200 240 40 0 chr6 181476502 181476552 -938690 + MIR SINE MIR 96 147 -61 199 217 22 0 chr6 181477017 181477063 -938179 + MIR SINE MIR 103 150 -58 1839 151 0 30 chr6 181477593 181477898 -937344 + AluSx SINE Alu 2 297 -15 275 327 146 12 chr6 181477915 181478080 -937162 + MIR SINE MIR 48 234 -28 1030 123 7 0 chr6 181478823 181478977 -936265 + 7SLRNA srpRNA srpRNA 95 249 -71 1090 256 102 40 chr6 181480200 181480650 -934592 - MLT1E LTR MaLR -113 480 3 303 193 89 112 chr6 181481552 181481746 -933496 - L1ME4a LINE L1 -58 6063 5875 2155 99 3 19 chr6 181481746 181482060 -933182 + AluY SINE Alu 1 309 -2 303 193 89 112 chr6 181482060 181482134 -933108 - L1ME4a LINE L1 -246 5875 5801 246 249 120 18 chr6 181482279 181482420 -932822 + L1P LINE L1 4392 4555 -1591 23 0 0 0 chr6 181482439 181482462 -932780 + AT_rich Low_complexity Low_complexity 1 23 0 365 206 0 0 chr6 181482464 181482527 -932715 + AluS SINE Alu 2 64 -239 953 198 0 0 chr6 181482527 181482694 -932548 + AluJb SINE Alu 132 298 -14 21 0 0 0 chr6 181482751 181482772 -932470 + AT_rich Low_complexity Low_complexity 1 21 0 804 130 0 0 chr6 181483078 181483193 -932049 + FLAM_C SINE Alu 1 115 -28 2227 61 14 0 chr6 181484160 181484455 -930787 + AluY SINE Alu 1 299 -12 304 350 14 49 chr6 181485219 181485362 -929880 + MIR3 SINE MIR 60 197 -11 201 39 0 0 chr6 181486646 181486672 -928570 + (TG)n Simple_repeat Simple_repeat 2 27 0 1580 150 3 21 chr6 181495569 181495856 -919386 - AluJo SINE Alu -21 291 10 2472 177 13 0 chr6 181496698 181497173 -918069 - L1 LINE L1 -2369 3777 3297 1888 145 3 0 chr6 181497204 181497494 -917748 - AluSg SINE Alu -19 291 1 1810 163 0 7 chr6 181497511 181497818 -917424 - AluJo SINE Alu -1 311 7 305 227 144 30 chr6 181497822 181497954 -917288 - L1MD1 LINE L1 -288 5954 5808 691 270 87 12 chr6 181497984 181498225 -917017 + L1ME LINE L1 5522 5780 -382 194 281 0 47 chr6 181498540 181498604 -916638 - MIR SINE MIR -8 254 194 1169 166 21 29 chr6 181498605 181498881 -916361 - AluJo SINE Alu 0 317 44 348 247 17 144 chr6 181498881 181499055 -916187 - MIR SINE MIR -64 198 47 354 288 117 9 chr6 181500346 181500457 -914785 - MIR SINE MIR -128 134 12 2252 33 0 0 chr6 181501056 181501329 -913913 - AluY SINE Alu -4 307 35 534 137 0 26 chr6 181501432 181501549 -913693 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 1399 207 4 4 chr6 181501662 181501937 -913305 - AluJo SINE Alu -37 275 1 763 228 7 0 chr6 181502683 181502828 -912414 - MER5A DNA MER1_type -30 159 14 2078 115 0 0 chr6 181503153 181503469 -911773 - AluSx SINE Alu 0 316 1 238 218 0 18 chr6 181503786 181503841 -911401 + (CATA)n Simple_repeat Simple_repeat 2 55 0 214 182 23 0 chr6 181504173 181504217 -911025 + C-rich Low_complexity Low_complexity 3 47 0 335 294 108 2 chr6 181505759 181505942 -909300 - L1MCa LINE L1 -1313 1474 1277 347 240 140 73 chr6 181506259 181506438 -908804 + MIR SINE MIR 2 192 -70 283 344 119 0 chr6 181507384 181507535 -907707 + MIR3 SINE MIR 31 199 -9 350 256 68 17 chr6 181507542 181507659 -907583 + L2 LINE L2 3188 3310 -3 1400 155 0 5 chr6 181508863 181509082 -906160 + AluSx SINE Alu 3 220 -92 26 50 0 0 chr6 181509146 181509186 -906056 + AT_rich Low_complexity Low_complexity 1 40 0 30 59 0 0 chr6 181509310 181509361 -905881 + AT_rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr6 181509752 181509779 -905463 + AT_rich Low_complexity Low_complexity 1 27 0 307 308 0 0 chr6 181509994 181510072 -905170 - L2 LINE L2 -1010 2304 2227 1318 144 40 5 chr6 181510324 181510546 -904696 + AluSx SINE Alu 1 230 -82 419 0 20 0 chr6 181510547 181510598 -904644 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 198 0 0 0 chr6 181510599 181510621 -904621 + (TA)n Simple_repeat Simple_repeat 2 23 0 830 211 72 38 chr6 181510913 181511150 -904092 - MLT1D LTR MaLR -260 245 1 636 200 25 0 chr6 181511706 181511826 -903416 - AluJb SINE Alu -188 124 2 246 265 15 0 chr6 181511899 181511967 -903275 + MER112 DNA MER1_type 7 75 -185 938 336 102 44 chr6 181512026 181512654 -902588 + L2 LINE L2 1501 2182 -1132 2838 10 0 0 chr6 181512654 181512961 -902281 - AluYa5 SINE Alu -4 307 1 938 336 102 44 chr6 181512961 181513099 -902143 + L2 LINE L2 2182 2311 -1003 231 356 36 0 chr6 181513096 181513226 -902016 - MIR SINE MIR -4 204 65 * 2401 82 0 0 chr6 181515155 181515449 -899793 + AluY SINE Alu 1 294 -17 198 0 0 0 chr6 181516344 181516366 -898876 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr6 181517174 181517196 -898046 + (A)n Simple_repeat Simple_repeat 1 22 0 214 335 28 35 chr6 181519106 181519248 -895994 - MIR SINE MIR -63 145 21 620 269 72 26 chr6 181520124 181520429 -894813 + L1MC4a LINE L1 5691 6009 -1799 707 153 23 15 chr6 181521162 181521432 -893810 + CT-rich Low_complexity Low_complexity 1 272 0 686 189 28 35 chr6 181521644 181521712 -893530 + LTR54B LTR ERV1 1 68 -430 2046 132 54 46 chr6 181521712 181522084 -893158 + THE1C LTR MaLR 1 375 0 686 189 28 35 chr6 181522084 181522158 -893084 + LTR54B LTR ERV1 68 142 -356 1158 121 55 10 chr6 181522243 181522442 -892800 + LTR54 LTR ERV1 303 510 0 1304 227 141 54 chr6 181522462 181523052 -892190 - LTR50 LTR ERVL -131 664 24 249 313 66 66 chr6 181523069 181523251 -891991 - MIR3 SINE MIR -6 202 21 2664 190 9 29 chr6 181523453 181524005 -891237 - L1MD3 LINE L1 0 7995 7455 2538 76 34 0 chr6 181526052 181526380 -888862 + L1PA13 LINE L1 5825 6163 0 236 300 79 42 chr6 181527394 181527634 -887608 + L3b LINE CR1 1110 1358 -225 2119 130 0 3 chr6 181527685 181527986 -887256 + AluSx SINE Alu 1 300 -12 224 348 0 0 chr6 181529707 181529776 -885466 + L2 LINE L2 3245 3313 0 262 321 123 0 chr6 181530121 181530227 -885015 + L2 LINE L2 3194 3312 -1 1531 174 168 69 chr6 181530552 181530947 -884295 + MLT1D LTR MaLR 12 457 -48 225 0 0 0 chr6 181530947 181530972 -884270 + (TG)n Simple_repeat Simple_repeat 1 25 0 1531 174 168 69 chr6 181530972 181531023 -884219 + MLT1D LTR MaLR 457 502 -3 224 389 36 29 chr6 181531041 181531180 -884062 + MIR3 SINE MIR 21 160 -48 1996 114 3 28 chr6 181533949 181534275 -880967 - AluSx SINE Alu 0 319 1 343 274 59 75 chr6 181534410 181534596 -880646 - MIR3 SINE MIR -6 202 20 448 232 152 76 chr6 181535139 181535363 -879879 - MIR SINE MIR -1 261 21 1075 289 74 21 chr6 181535693 181536121 -879121 + MERVL LTR ERVL 1801 2205 -3280 1893 156 30 0 chr6 181536121 181536416 -878826 - AluSx SINE Alu -8 304 1 1075 289 74 21 chr6 181536416 181536924 -878318 + MERVL LTR ERVL 2205 2824 -2661 5332 201 41 5 chr6 181537038 181538444 -876798 - L1PB3 LINE L1 0 6154 4697 619 345 6 0 chr6 181538448 181538622 -876620 + MERVL LTR ERVL 2913 3087 -1909 233 222 0 0 chr6 181539241 181539295 -875947 + LTR33 LTR ERVL 14 67 -454 * 295 202 77 58 chr6 181539264 181539368 -875874 + LTR33 LTR ERVL 416 521 0 274 276 64 45 chr6 181539559 181539715 -875527 - L1ME LINE L1 -294 5827 5669 248 313 128 28 chr6 181541292 181541471 -873771 - MIR SINE MIR -59 203 7 250 314 76 0 chr6 181541720 181541825 -873417 - MER5C DNA MER1_type -200 124 12 3823 200 77 10 chr6 181542335 181542835 -872407 - L1MA9 LINE L1 -7 6305 5840 192 40 0 0 chr6 181542835 181542860 -872382 + (CA)n Simple_repeat Simple_repeat 2 26 0 3823 200 77 10 chr6 181542860 181543239 -872003 - L1MA9 LINE L1 -472 5840 5367 440 204 76 30 chr6 181544591 181544723 -870519 - MLT1C LTR MaLR -328 139 2 1624 187 55 58 chr6 181545529 181545946 -869296 - MER31B LTR ERV1 -50 416 1 257 50 0 25 chr6 181546154 181546194 -869048 + (CA)n Simple_repeat Simple_repeat 2 40 0 512 273 93 0 chr6 181546211 181546372 -868870 + LTR33 LTR ERVL 338 513 -8 8869 115 11 17 chr6 181546503 181547811 -867431 + HSMAR2 DNA Mariner 3 1302 0 543 264 88 34 chr6 181548439 181548543 -866699 + L1M1 LINE L1 3303 3400 -4165 2318 83 0 7 chr6 181548543 181548845 -866397 + AluY SINE Alu 1 300 -11 543 264 88 34 chr6 181548845 181549036 -866206 + L1M1 LINE L1 3400 3614 -3951 494 123 12 0 chr6 181549031 181549112 -866130 + L1 LINE L1 4269 4350 -1796 * 1938 200 16 3 chr6 181549108 181549493 -865749 + L1 LINE L1 4578 4967 -1179 855 234 73 15 chr6 181549503 181549708 -865534 + MLT2F LTR ERVL 21 237 -426 934 254 9 0 chr6 181549780 181550000 -865242 + MLT2F LTR ERVL 442 663 0 431 273 29 32 chr6 181550018 181550293 -864949 + MERVL LTR ERVL 4412 4649 -1005 360 320 39 6 chr6 181551057 181551238 -864004 + MER5A DNA MER1_type 3 189 0 266 295 116 23 chr6 181551266 181551395 -863847 - MER5B DNA MER1_type -29 149 9 376 73 0 0 chr6 181551555 181551610 -863632 + L1MB4 LINE L1 6126 6180 0 614 239 83 10 chr6 181553346 181553551 -861691 - ORSL DNA AcHobo -33 242 23 2015 125 28 0 chr6 181556095 181556384 -858858 + AluSx SINE Alu 1 297 -15 1876 106 86 17 chr6 181562157 181562449 -852793 - AluSx SINE Alu 0 312 1 227 304 206 21 chr6 181562953 181563147 -852095 + MIR SINE MIR 16 245 -17 286 323 5 85 chr6 181567082 181567271 -847971 + L2 LINE L2 2904 3077 -195 432 269 57 26 chr6 181567898 181568069 -847173 + L1ME4a LINE L1 5670 5842 -279 27 62 0 0 chr6 181569005 181569053 -846189 + AT_rich Low_complexity Low_complexity 1 48 0 629 297 36 16 chr6 181569134 181569437 -845805 + L1ME4a LINE L1 5567 5875 -246 1821 148 33 3 chr6 181569732 181570035 -845207 - AluSx SINE Alu 0 312 1 340 353 23 54 chr6 181570043 181570264 -844978 + L1ME LINE L1 5606 5819 -302 2391 52 6 49 chr6 181570392 181570719 -844523 + AluSq SINE Alu 1 313 0 2266 104 3 0 chr6 181571299 181571608 -843634 - AluY SINE Alu -1 310 1 243 0 0 0 chr6 181571658 181571685 -843557 + (CA)n Simple_repeat Simple_repeat 2 28 0 206 325 103 0 chr6 181573881 181573998 -841244 - MIR3 SINE MIR -34 174 46 448 316 92 56 chr6 181574605 181575572 -839670 + L1M2 LINE L1 447 1453 -5396 21 0 0 0 chr6 181578915 181578936 -836306 + AT_rich Low_complexity Low_complexity 1 21 0 347 298 38 62 chr6 181580866 181581026 -834216 - MIR SINE MIR -23 239 51 264 302 307 0 chr6 181582779 181582991 -832251 - L2 LINE L2 -4 3268 2992 2112 130 49 6 chr6 181584706 181585052 -830190 + MER46B DNA MER2_type 1 236 0 262 202 38 180 chr6 181586635 181586818 -828424 - MIR SINE MIR -43 219 63 246 311 150 17 chr6 181587474 181587654 -827588 + MIR SINE MIR 55 258 -4 225 246 0 0 chr6 181588499 181588556 -826686 + L1ME4a LINE L1 5575 5631 -490 244 282 40 27 chr6 181588630 181588779 -826463 + L1ME4a LINE L1 5792 5942 -179 2514 38 0 0 chr6 181588835 181589128 -826114 + AluY SINE Alu 1 293 -18 1655 163 19 47 chr6 181589875 181590194 -825048 + AluJb SINE Alu 1 310 -2 277 250 87 39 chr6 181591238 181591342 -823900 + MIR SINE MIR 16 124 -84 1707 128 13 83 chr6 181591352 181591664 -823578 - AluJo SINE Alu -16 296 7 215 217 22 0 chr6 181592567 181592613 -822629 + MIR3 SINE MIR 121 167 -41 1821 188 43 8 chr6 181592832 181593230 -822012 - Tigger3(Golem) DNA MER2_type -31 2998 2587 381 185 141 0 chr6 181593223 181593315 -821927 - Tigger3(Golem) DNA MER2_type -338 2691 2587 * 499 184 19 0 chr6 181593308 181593411 -821831 - Tigger3(Golem) DNA MER2_type -337 2692 2588 * 509 179 19 0 chr6 181593401 181593507 -821735 - Tigger3(Golem) DNA MER2_type -335 2694 2587 * 3716 199 51 7 chr6 181593500 181594356 -820886 - Tigger3b DNA MER2_type -337 894 1 992 236 136 15 chr6 181596518 181596929 -818313 + MLT1C LTR MaLR 1 461 -6 1232 123 11 0 chr6 181598940 181599119 -816123 - AluSg/x SINE Alu 0 312 132 2319 109 0 0 chr6 181599119 181599431 -815811 - AluSx SINE Alu 0 312 1 710 274 84 11 chr6 181599601 181599948 -815294 - MLT1D LTR MaLR -33 472 101 189 389 74 13 chr6 181603848 181603997 -811245 + L2 LINE L2 3111 3268 -4 180 77 0 0 chr6 181604254 181604280 -810962 + (CA)n Simple_repeat Simple_repeat 1 26 0 1701 175 3 14 chr6 181604356 181604647 -810595 + AluJo SINE Alu 7 294 -18 257 98 0 0 chr6 181605552 181605593 -809649 + AluY SINE Alu 1 41 -261 1868 52 0 0 chr6 181605593 181605822 -809420 + AluY SINE Alu 72 300 -11 846 128 28 50 chr6 181605953 181606133 -809109 - Tigger4(Zombi) DNA MER2_type -2193 538 363 1245 163 5 18 chr6 181606429 181606650 -808592 - AluJo SINE Alu -1 311 94 207 322 126 14 chr6 181607357 181607500 -807742 - L3b LINE CR1 -115 1468 1310 186 286 0 0 chr6 181608013 181608062 -807180 - L2 LINE L2 -7 3265 3217 215 360 18 18 chr6 181608485 181608599 -806643 - L2 LINE L2 -64 3249 3136 680 268 129 32 chr6 181609423 181609856 -805386 - L1MC5 LINE L1 -196 7765 7291 335 332 99 38 chr6 181610039 181610301 -804941 + L1MC4 LINE L1 6789 7066 -976 360 0 0 0 chr6 181610302 181610342 -804900 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 312 308 40 95 chr6 181610693 181610946 -804296 + L1ME LINE L1 5263 5501 -620 311 266 84 10 chr6 181612675 181612830 -802412 - MIR SINE MIR -37 225 58 183 222 67 0 chr6 181613092 181613137 -802105 + MIR SINE MIR 85 132 -76 329 301 72 18 chr6 181614223 181614389 -800853 - MER5B DNA MER1_type -3 175 1 264 59 0 0 chr6 181615224 181615258 -799984 + (CA)n Simple_repeat Simple_repeat 2 35 0 328 299 37 9 chr6 181616446 181616553 -798689 + MIR SINE MIR 25 134 -74 23 0 0 0 chr6 181618470 181618493 -796749 + GC_rich Low_complexity Low_complexity 1 23 0 192 152 0 0 chr6 181618915 181618948 -796294 + GA-rich Low_complexity Low_complexity 1 33 0 316 263 0 0 chr6 181619518 181619598 -795644 + C-rich Low_complexity Low_complexity 1 80 0 500 142 24 31 chr6 181622051 181622178 -793064 + CT-rich Low_complexity Low_complexity 1 126 0 30 27 0 0 chr6 181625044 181625081 -790161 + GC_rich Low_complexity Low_complexity 1 37 0 777 236 96 71 chr6 181627468 181627918 -787324 - L1M4 LINE L1 -2505 3641 3181 505 295 21 11 chr6 181627924 181628114 -787128 - L1MEc LINE L1 -6166 230 39 2901 77 0 11 chr6 181628511 181628888 -786354 - THE1C LTR MaLR 0 375 3 10298 115 29 38 chr6 181628890 181630485 -784757 - THE1C-int LTR MaLR 0 1580 1 2979 80 0 5 chr6 181630485 181630862 -784380 - THE1C LTR MaLR 0 375 1 195 339 31 0 chr6 181631304 181631369 -783873 + L2 LINE L2 2416 2482 -832 813 261 109 50 chr6 181631516 181631656 -783586 - HAL1 LINE L1 -29 2478 2348 1825 186 0 7 chr6 181631656 181631963 -783279 - AluJo SINE Alu -7 305 1 813 261 109 50 chr6 181631963 181632937 -782305 - HAL1 LINE L1 -159 2348 1266 238 265 92 20 chr6 181633173 181633271 -781971 + L2 LINE L2 2946 3050 -222 1465 169 74 27 chr6 181633276 181633613 -781629 - MLT1A1 LTR MaLR 0 365 13 335 268 137 44 chr6 181634917 181635122 -780120 + L1M2 LINE L1 1048 1271 -5578 252 324 122 33 chr6 181635771 181636229 -779013 - L2 LINE L2 -82 3190 2606 589 244 24 30 chr6 181636961 181637129 -778113 + MER69A DNA AcHobo 3 169 -8 209 328 106 37 chr6 181637707 181637896 -777346 - MIR SINE MIR -46 216 15 264 238 99 50 chr6 181638903 181639004 -776238 + MIR SINE MIR 5 110 -152 370 267 56 0 chr6 181639283 181639373 -775869 + L2 LINE L2 3216 3310 -3 184 357 145 26 chr6 181639555 181639782 -775460 + L2 LINE L2 2633 2886 -428 263 376 144 0 chr6 181639935 181640185 -775057 + L2 LINE L2 2969 3254 -18 321 342 99 45 chr6 181640289 181640532 -774710 + L1ME4a LINE L1 5592 5847 -274 22 35 0 0 chr6 181640861 181640890 -774352 + AT_rich Low_complexity Low_complexity 1 29 0 1105 163 355 3 chr6 181641141 181641473 -773769 - MER31B LTR ERV1 -16 450 2 569 256 31 26 chr6 181641837 181642032 -773210 + LTR37B LTR ERV1 5 200 -268 216 228 89 63 chr6 181642774 181642853 -772389 - L2 LINE L2 0 3272 3192 1461 152 116 25 chr6 181644227 181644504 -770738 + AluJb SINE Alu 5 306 -6 289 282 94 26 chr6 181644563 181644680 -770562 + MIR SINE MIR 122 246 -16 837 242 40 42 chr6 181645091 181645408 -769834 - L1ME2 LINE L1 -1 6177 5842 2083 110 45 3 chr6 181647806 181648097 -767145 + AluSq SINE Alu 1 303 -10 352 267 69 0 chr6 181648398 181648499 -766743 - MIR SINE MIR -28 234 127 229 365 80 29 chr6 181648826 181648963 -766279 - L2 LINE L2 -685 2629 2486 1824 124 69 4 chr6 181649821 181650096 -765146 - AluSx SINE Alu -19 293 1 451 259 0 18 chr6 181650158 181650270 -764972 - MIR SINE MIR -50 212 103 181 204 0 23 chr6 181651202 181651246 -763996 + L3 LINE CR1 1422 1464 -113 1312 260 95 14 chr6 181653287 181653957 -761285 - L1MEc LINE L1 -3428 2787 2088 2364 90 0 32 chr6 181653980 181654290 -760952 + AluSq SINE Alu 1 300 -13 315 65 0 0 chr6 181654310 181654356 -760886 + MADE1 DNA Mariner 1 46 -34 311 227 90 35 chr6 181654356 181654919 -760323 - L1MEc LINE L1 -16 6412 1902 1117 171 41 119 chr6 181654949 181655149 -760093 - MER58B DNA MER1_type -2080 340 126 1903 165 3 19 chr6 181655149 181655465 -759777 - AluJo SINE Alu -1 311 1 2536 58 0 0 chr6 181655475 181655767 -759475 - AluY SINE Alu -19 292 1 1117 171 41 119 chr6 181655767 181655917 -759325 - MER58B DNA MER1_type -2303 117 7 434 204 39 0 chr6 181655956 181656059 -759183 - Tigger3(Golem) DNA MER2_type -336 2693 2587 * 490 194 19 0 chr6 181656052 181656155 -759087 - Tigger3(Golem) DNA MER2_type -338 2691 2587 461 217 19 0 chr6 181656145 181656251 -758991 - Tigger3(Golem) DNA MER2_type -335 2694 2587 * 401 221 39 0 chr6 181656244 181656348 -758894 - Tigger3(Golem) DNA MER2_type -338 2691 2584 * 1909 119 33 77 chr6 181656338 181656765 -758477 - Tigger3(Golem) DNA MER2_type -338 2691 2284 553 321 194 32 chr6 181656832 181657852 -757390 - L1MEc LINE L1 -4725 1492 80 305 265 93 7 chr6 181658078 181658229 -757013 - HAL1 LINE L1 -1244 1263 1100 2204 110 0 17 chr6 181660832 181661131 -754111 + AluSq SINE Alu 1 294 -19 1251 174 159 66 chr6 181661548 181661882 -753360 + MLT1A1 LTR MaLR 1 365 0 1707 115 119 8 chr6 181661939 181662199 -753043 - AluSg1 SINE Alu -12 297 9 243 0 0 0 chr6 181662969 181662996 -752246 + (TG)n Simple_repeat Simple_repeat 1 27 0 29100 105 19 49 chr6 181663461 181667928 -747314 - L1PA8 LINE L1 0 6487 2204 2165 109 31 3 chr6 181667928 181668222 -747020 + AluSg SINE Alu 1 302 -8 29100 105 19 49 chr6 181668222 181670359 -744883 - L1PA8 LINE L1 -4283 2204 6 1270 71 36 0 chr6 181670405 181670573 -744669 - MLT2A1 LTR ERVL -81 363 190 764 183 22 0 chr6 181672076 181672213 -743029 - MER5A DNA MER1_type -23 166 27 847 158 0 0 chr6 181673743 181673876 -741366 + FLAM_C SINE Alu 1 133 0 1509 190 119 0 chr6 181674266 181674577 -740665 - MER7A DNA MER2_type 0 346 1 305 248 128 0 chr6 181674719 181674828 -740414 + L1ME4a LINE L1 5942 6064 -57 973 294 47 7 chr6 181674928 181675224 -740018 - MER58B DNA MER1_type -9 332 25 405 311 21 37 chr6 181675982 181676172 -739070 + MER5A DNA MER1_type 2 188 -1 246 243 29 0 chr6 181677226 181677296 -737946 + MIR SINE MIR 114 185 -77 13963 198 41 35 chr6 181678130 181682000 -733242 + L1PA11 LINE L1 1 5255 -2329 6538 124 19 15 chr6 181682003 181683063 -732179 + L1PA11 LINE L1 5717 6816 -796 2286 87 0 20 chr6 181683063 181683363 -731879 + AluY SINE Alu 1 294 -17 6538 124 19 15 chr6 181683363 181684162 -731080 + L1PA11 LINE L1 6816 7611 -1 1271 203 17 8 chr6 181684952 181685189 -730053 + MER8 DNA MER2_type 1 239 0 231 317 0 0 chr6 181686360 181686540 -728702 + (TG)n Simple_repeat Simple_repeat 1 180 0 2207 100 28 0 chr6 181687540 181687830 -727412 + AluSq SINE Alu 1 298 -15 1414 165 32 86 chr6 181687845 181688160 -727082 - AluJo SINE Alu -14 298 1 268 164 0 36 chr6 181688664 181688719 -726523 + MIR SINE MIR 94 146 -116 365 235 0 59 chr6 181689607 181689709 -725533 - L1MC4 LINE L1 -1339 6703 6608 2195 130 0 7 chr6 181690215 181690515 -724727 - AluSx SINE Alu -14 298 1 1980 150 0 10 chr6 181691091 181691398 -723844 - AluJo SINE Alu 0 312 9 1630 135 116 8 chr6 181692187 181692454 -722788 - AluSg1 SINE Alu -13 296 1 1246 232 82 0 chr6 181695666 181695981 -719261 + MER58B DNA MER1_type 1 341 0 380 128 51 26 chr6 181696434 181696512 -718730 - L1MA6 LINE L1 -3 6297 6218 237 344 49 12 chr6 181696543 181696706 -718536 - MIR3 SINE MIR -21 187 19 202 132 0 0 chr6 181697061 181697099 -718143 + L2 LINE L2 3276 3313 0 914 236 47 66 chr6 181697105 181697472 -717770 - MLT1A1 LTR MaLR 0 365 1 1517 191 136 33 chr6 181699399 181699855 -715387 - L1MB7 LINE L1 -11 6173 5671 23 54 0 0 chr6 181700613 181700650 -714592 + AT_rich Low_complexity Low_complexity 1 37 0 190 386 9 9 chr6 181703412 181703526 -711716 - MIR3 SINE MIR -52 156 43 253 313 95 0 chr6 181705033 181705212 -710030 - L2 LINE L2 -1409 1905 1710 22 0 0 0 chr6 181706625 181706647 -708595 + AT_rich Low_complexity Low_complexity 1 22 0 300 321 64 31 chr6 181707251 181707574 -707668 - L2 LINE L2 -267 3046 2649 1305 227 98 21 chr6 181707582 181707827 -707415 + Charlie4a DNA MER1_type 38 263 -1698 1242 153 88 0 chr6 181707827 181708043 -707199 - MER46A DNA MER2_type 0 236 2 1305 227 98 21 chr6 181708043 181708224 -707018 + Charlie4a DNA MER1_type 263 497 -11 4484 184 30 14 chr6 181708243 181709337 -705905 - L1MA9 LINE L1 -114 6198 5090 6041 224 68 49 chr6 181709596 181710564 -704678 + L1MD1 LINE L1 3268 4216 -2026 1370 199 67 11 chr6 181710564 181710846 -704396 + AluJb SINE Alu 5 302 -10 6041 224 68 49 chr6 181710846 181712810 -702432 + L1MD1 LINE L1 4216 6242 0 313 355 78 15 chr6 181712847 181713115 -702127 + L1M4 LINE L1 2257 2541 -3605 732 220 118 21 chr6 181713125 181713311 -701931 + MER58C DNA MER1_type 1 204 -11 1273 261 73 31 chr6 181713312 181713932 -701310 + L1M4 LINE L1 2538 3183 -2963 3734 179 71 7 chr6 181713952 181714713 -700529 + L1MC1 LINE L1 5519 6328 -5 1401 265 53 44 chr6 181714724 181715407 -699835 + L1M4 LINE L1 3208 3896 -2250 21 36 0 0 chr6 181715776 181715804 -699438 + AT_rich Low_complexity Low_complexity 1 28 0 1697 123 164 25 chr6 181717089 181717177 -698065 - MER46B DNA MER2_type -2495 236 162 2248 147 70 22 chr6 181717177 181717591 -697651 - Tigger2a DNA MER2_type 0 434 1 1697 123 164 25 chr6 181717591 181717819 -697423 - MER46B DNA MER2_type -2569 162 1 1857 142 0 7 chr6 181717987 181718282 -696960 - AluJb SINE Alu -19 293 1 2256 88 0 0 chr6 181719674 181719968 -695274 + AluSx SINE Alu 1 294 -18 1815 73 0 8 chr6 181720625 181720872 -694370 - AluSc SINE Alu -9 300 56 795 147 0 37 chr6 181721452 181721588 -693654 + FLAM_C SINE Alu 7 137 -6 196 326 126 30 chr6 181722075 181722210 -693032 - MIR3 SINE MIR -38 170 23 196 352 69 7 chr6 181723651 181723796 -691446 + MER5A DNA MER1_type 6 159 -30 203 286 0 32 chr6 181725766 181725829 -689413 - L2 LINE L2 -226 3046 2986 244 218 0 36 chr6 181726626 181726681 -688561 + L3 LINE CR1 1524 1576 -1 258 336 80 18 chr6 181728739 181728852 -686390 + 5S rRNA rRNA 2 121 0 1254 160 39 17 chr6 181730078 181730309 -684933 + MER46A DNA MER2_type 1 236 0 1047 116 222 27 chr6 181733573 181733798 -681444 - Tigger7 DNA MER2_type 0 2487 2219 905 206 182 14 chr6 181733801 181734015 -681227 - Tigger7 DNA MER2_type -469 264 15 260 198 188 20 chr6 181735606 181735707 -679535 + L2 LINE L2 256 373 -2941 700 240 90 87 chr6 181735791 181736291 -678951 - MLT1G1 LTR MaLR -55 535 1 1170 286 249 35 chr6 181736291 181737349 -677893 + L2 LINE L2 492 1775 -1539 232 261 6 93 chr6 181738026 181738157 -677085 + L1M4 LINE L1 2689 2805 -3341 2239 91 0 0 chr6 181738157 181738453 -676789 + AluSx SINE Alu 1 296 -16 232 261 6 93 chr6 181738453 181738482 -676760 + L1M4 LINE L1 2805 2835 -3311 7296 188 101 24 chr6 181738583 181740399 -674843 + L1M4c LINE L1 4 2053 -4331 1864 242 210 23 chr6 181740471 181741475 -673767 - HAL1 LINE L1 -1 2506 1315 933 270 117 31 chr6 181742253 181742893 -672349 - HAL1 LINE L1 -1179 1328 634 2325 74 3 0 chr6 181747153 181747463 -667779 + AluY SINE Alu 1 311 0 1557 240 207 9 chr6 181748985 181749564 -665678 - Charlie1 DNA MER1_type 0 2761 2068 2391 42 0 19 chr6 181750964 181751272 -663970 + AluY SINE Alu 1 302 -9 1905 136 0 13 chr6 181751956 181752265 -662977 + AluSx SINE Alu 1 305 -7 239 336 69 15 chr6 181753335 181753466 -661776 + L2 LINE L2 3133 3270 -2 2270 155 39 25 chr6 181754989 181755428 -659814 - MER65A LTR ERV1 0 445 1 2072 225 26 6 chr6 181755428 181755894 -659348 - MER65A-int LTR ERV1 0 4871 4397 989 243 69 1 chr6 181755921 181756289 -658953 - MER65A-int LTR ERV1 -854 4017 3605 297 191 45 61 chr6 181756301 181756476 -658766 - MER65A-int LTR ERV1 -939 5392 3276 2357 193 102 92 chr6 181756477 181757761 -657481 - MER65A-int LTR ERV1 -1269 5062 2482 834 184 46 41 chr6 181757842 181758060 -657182 - MER65A-int LTR ERV1 -2867 3731 3513 1102 189 40 62 chr6 181758264 181758779 -656463 - MER65A-int LTR ERV1 -4366 2392 1720 591 207 87 51 chr6 181758785 181759168 -656074 - MER65A-int LTR ERV1 -2937 1999 1516 * 3386 167 99 89 chr6 181759084 181760098 -655144 - LTR57-int LTR ERVL -3763 1580 557 * 6002 210 84 49 chr6 181759467 181761395 -653847 - MER65A-int LTR ERV1 -2794 2077 83 743 83 9 18 chr6 181761479 181761588 -653654 - MER65A LTR ERV1 0 445 338 1831 135 191 3 chr6 181762096 181762452 -652790 + MLT1D LTR MaLR 82 504 -1 298 290 60 30 chr6 181763949 181764049 -651193 + L2 LINE L2 3197 3299 -14 973 263 61 14 chr6 181764849 181765195 -650047 - L1M4 LINE L1 -2808 3338 2977 322 174 21 89 chr6 181767162 181767352 -647890 + (CTGGGG)n Simple_repeat Simple_repeat 3 179 0 476 298 48 48 chr6 181769567 181769920 -645322 + L1M4 LINE L1 3589 3941 -2205 1229 313 107 31 chr6 181770323 181771107 -644135 + L1M4 LINE L1 4556 5399 -747 2184 96 10 0 chr6 181776387 181776680 -638562 + AluSp SINE Alu 1 296 -17 2489 177 42 1 chr6 181777598 181778212 -637030 - L1M1 LINE L1 -562 5741 5105 392 232 0 0 chr6 181778198 181778297 -636945 + L1MA4A LINE L1 6182 6280 -23 * 277 299 126 24 chr6 181778526 181778693 -636549 + MIR SINE MIR 61 244 -18 297 0 0 0 chr6 181779359 181779392 -635850 + (TG)n Simple_repeat Simple_repeat 2 34 0 488 204 166 6 chr6 181780272 181780429 -634813 - MER5A DNA MER1_type -2 187 6 276 243 0 0 chr6 181781250 181781419 -633823 + (TG)n Simple_repeat Simple_repeat 1 169 0 698 137 6 16 chr6 181781435 181781617 -633625 + (TG)n Simple_repeat Simple_repeat 1 180 0 356 215 169 31 chr6 181782920 181783050 -632192 - MER53 DNA DNA -18 171 24 251 358 8 8 chr6 181784108 181784228 -631014 - MIR SINE MIR -65 143 24 1870 135 4 4 chr6 181784431 181784712 -630530 + AluSx SINE Alu 1 281 -31 181 54 0 54 chr6 181785091 181785128 -630114 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1482 96 13 48 chr6 181785142 181785372 -629870 - AluSg/x SINE Alu -2 310 89 185 185 56 74 chr6 181789390 181789444 -625798 + L2 LINE L2 3261 3313 0 225 256 50 19 chr6 181794503 181794663 -620579 + (ACTG)n Simple_repeat Simple_repeat 3 167 0 2688 23 0 0 chr6 181797209 181797515 -617727 - AluYb8 SINE Alu -12 306 1 186 319 53 21 chr6 181798724 181798818 -616424 - MER5B DNA MER1_type -81 97 1 309 382 0 6 chr6 181799727 181799884 -615358 + (TG)n Simple_repeat Simple_repeat 2 157 0 326 257 7 103 chr6 181800358 181800494 -614748 - MIR SINE MIR -120 142 20 2038 102 0 7 chr6 181801116 181801425 -613817 - AluSg SINE Alu 0 307 1 197 274 36 83 chr6 181802028 181802112 -613130 + L2 LINE L2 3192 3271 -1 281 235 24 0 chr6 181802488 181802573 -612669 + L1MB5 LINE L1 6088 6174 0 736 218 78 11 chr6 181802619 181802798 -612444 - Charlie4 DNA MER1_type -6 1955 1765 941 173 79 28 chr6 181802805 181803189 -612053 + MER21A LTR ERV1 2 425 -438 2474 155 36 16 chr6 181803387 181803826 -611416 + MER21A LTR ERV1 484 931 0 1114 209 36 0 chr6 181803846 181804113 -611129 - Charlie4 DNA MER1_type -193 1768 32 1280 231 71 59 chr6 181804120 181804503 -610739 - Charlie2 DNA MER1_type -461 2401 2009 1732 189 0 0 chr6 181804503 181804804 -610438 + AluJb SINE Alu 1 301 -11 1280 231 71 59 chr6 181804804 181804943 -610299 - Charlie2 DNA MER1_type -853 2009 1873 486 361 55 12 chr6 181805156 181805411 -609831 - L2 LINE L2 -523 2791 2526 232 262 47 47 chr6 181805476 181805583 -609659 + Charlie8 DNA MER1_type 101 207 -2210 195 267 105 23 chr6 181805936 181806022 -609220 + MIR3 SINE MIR 66 158 -50 1101 271 129 23 chr6 181809251 181809686 -605556 + ERVL LTR ERVL 4853 5333 -431 1414 251 48 7 chr6 181809686 181809775 -605467 + L1MC2 LINE L1 4937 5021 -1125 1934 113 3 45 chr6 181809775 181810086 -605156 + AluSx SINE Alu 1 298 -14 1414 251 48 7 chr6 181810086 181810430 -604812 + L1MC2 LINE L1 5021 5388 -758 459 184 46 37 chr6 181810432 181810541 -604701 + FRAM SINE Alu 65 174 -2 3722 171 48 76 chr6 181810542 181811516 -603726 + L1MC2 LINE L1 5386 6332 -12 2045 114 0 3 chr6 181811518 181811807 -603435 + AluSx SINE Alu 4 291 -21 730 318 56 3 chr6 181811852 181812229 -603013 + L1MEc LINE L1 1310 1706 -4690 2052 128 6 13 chr6 181812251 181812563 -602679 - AluSx SINE Alu -2 310 1 641 255 86 83 chr6 181813202 181813273 -601969 + LTR33A LTR ERVL 17 86 -437 929 271 64 50 chr6 181813273 181813631 -601611 - MLT1A1 LTR MaLR -2 363 1 641 255 86 83 chr6 181813631 181814078 -601164 + LTR33A LTR ERVL 86 523 0 443 261 146 18 chr6 181814507 181814672 -600570 + L2 LINE L2 3128 3313 0 2258 88 0 0 chr6 181814778 181815073 -600169 + AluSq SINE Alu 1 295 -18 225 0 0 0 chr6 181815073 181815098 -600144 + (TA)n Simple_repeat Simple_repeat 2 26 0 1599 163 7 33 chr6 181815178 181815485 -599757 + AluJb SINE Alu 11 309 -3 1659 197 0 0 chr6 181815552 181815862 -599380 - AluJb SINE Alu -2 310 1 2039 112 10 0 chr6 181815874 181816168 -599074 - AluSx SINE Alu -15 297 1 249 301 163 7 chr6 181816210 181816363 -598879 + MLT1K LTR MaLR 23 199 -389 246 308 103 31 chr6 181816529 181816724 -598518 + MLT1K LTR MaLR 378 586 -2 258 149 160 0 chr6 181817023 181817117 -598125 + L1ME4a LINE L1 5991 6099 -22 181 261 200 0 chr6 181818448 181818513 -596729 - MIR SINE MIR -116 146 69 1790 201 140 32 chr6 181818625 181819132 -596110 + MLT1F1 LTR MaLR 6 567 0 1440 254 36 40 chr6 181819246 181819424 -595818 + MLT1J1 LTR MaLR 3 180 -266 1629 184 57 44 chr6 181819424 181819809 -595433 + MLT1B LTR MaLR 1 390 0 1440 254 36 40 chr6 181819809 181820075 -595167 + MLT1J1 LTR MaLR 180 445 -1 471 284 43 49 chr6 181820664 181820686 -594556 + MIR SINE MIR 100 121 -141 2034 119 3 0 chr6 181820686 181820981 -594261 - AluSx SINE Alu -11 301 6 471 284 43 49 chr6 181820981 181821120 -594122 + MIR SINE MIR 121 260 -2 779 14 89 23 chr6 181821633 181821971 -593271 + GA-rich Low_complexity Low_complexity 1 530 0 1919 114 4 0 chr6 181822174 181822479 -592763 - AluSg SINE Alu 0 306 1 190 406 9 0 chr6 181822538 181822644 -592598 + L2 LINE L2 2679 2785 -529 286 184 0 0 chr6 181823187 181823236 -592006 - L2 LINE L2 -1 3312 3264 322 340 89 42 chr6 181825355 181825546 -589696 + MLT1K LTR MaLR 45 244 -344 333 160 40 100 chr6 181825601 181825701 -589541 + MLT1K LTR MaLR 486 579 -9 625 283 143 26 chr6 181825845 181826075 -589167 - MIR SINE MIR 0 262 6 332 279 11 11 chr6 181826120 181826218 -589024 + MIR SINE MIR 40 137 -71 2134 110 3 0 chr6 181826769 181827070 -588172 - AluSx SINE Alu -10 302 1 722 177 27 14 chr6 181827324 181827471 -587771 - L1MD3 LINE L1 -10 7985 7837 29 47 0 0 chr6 181827490 181827533 -587709 + AT_rich Low_complexity Low_complexity 1 43 0 1476 183 283 0 chr6 181827653 181828063 -587179 - L1MD3 LINE L1 -117 7878 7353 180 321 0 0 chr6 181829015 181829068 -586174 - MIR SINE MIR -82 126 74 238 191 21 0 chr6 181829106 181829153 -586089 - L2 LINE L2 0 3272 3225 446 272 38 90 chr6 181834561 181834914 -580328 + L1M4 LINE L1 5094 5424 -759 2219 170 41 19 chr6 181834932 181834974 -580268 + MER82 DNA MER2_type 7 47 -606 2327 207 128 27 chr6 181834974 181835630 -579612 - MER72 LTR ERV1 0 722 1 2219 170 41 19 chr6 181835630 181835998 -579244 + MER82 DNA MER2_type 47 426 -227 647 115 85 46 chr6 181835998 181836159 -579083 + AluY SINE Alu 158 311 0 303 167 121 30 chr6 181836162 181836228 -579014 + MER82 DNA MER2_type 435 506 -147 489 252 173 0 chr6 181838194 181838333 -576909 + MER82 DNA MER2_type 490 652 -1 193 287 84 105 chr6 181838421 181838755 -576487 - L2 LINE L2 -20 3293 2967 22 35 0 0 chr6 181838812 181838841 -576401 + AT_rich Low_complexity Low_complexity 1 29 0 1802 184 18 6 chr6 181839466 181839809 -575433 + L1PB4 LINE L1 5807 6153 -3 497 319 98 31 chr6 181840612 181841063 -574179 - L2 LINE L2 -16 3297 2817 1887 321 157 15 chr6 181841259 181842435 -572807 - L2 LINE L2 -584 2730 1389 209 382 0 0 chr6 181842453 181842521 -572721 - L2 LINE L2 -465 2849 2782 487 240 27 60 chr6 181842551 181842734 -572508 + L1MC/D LINE L1 5350 5526 -2516 * 3330 185 50 42 chr6 181842720 181842804 -572438 + L1MDa LINE L1 1117 1199 -5341 1955 118 50 0 chr6 181842804 181843101 -572141 + AluSx SINE Alu 1 312 0 3330 185 50 42 chr6 181843101 181843942 -571300 + L1MDa LINE L1 1199 2049 -4491 1508 156 37 69 chr6 181843942 181844400 -570842 - LTR23 LTR ERV1 0 445 50 1297 185 3 131 chr6 181844400 181844735 -570507 + AluJo SINE Alu 1 292 -10 1508 156 37 69 chr6 181844735 181844776 -570466 - LTR23 LTR ERV1 -395 50 9 1988 163 75 77 chr6 181844779 181845415 -569827 + L1MDa LINE L1 2048 2679 -3861 * 14572 187 23 9 chr6 181845411 181850444 -564798 + L1P4 LINE L1 1276 6387 -482 1916 111 54 0 chr6 181850444 181850723 -564519 + AluSp SINE Alu 3 296 -17 14572 187 23 9 chr6 181850723 181850861 -564381 + L1P4 LINE L1 6387 6522 -347 539 311 35 14 chr6 181851047 181851266 -563976 - MIR SINE MIR -3 259 33 232 185 0 37 chr6 181852678 181852732 -562510 - LTR13 LTR ERVK -376 631 580 1695 179 3 3 chr6 181853461 181853768 -561474 + AluJb SINE Alu 1 307 -5 703 216 239 28 chr6 181853832 181854225 -561017 + L1MC5 LINE L1 7303 7778 -183 1913 133 39 12 chr6 181854487 181854819 -560423 + L1MA4A LINE L1 5957 6297 -6 356 0 23 0 chr6 181855191 181855235 -560007 + (TG)n Simple_repeat Simple_repeat 2 46 0 300 345 18 6 chr6 181856020 181856185 -559057 - L1ME4a LINE L1 -215 5906 5740 2375 33 0 0 chr6 181856501 181856776 -558466 - L1PA4 LINE L1 -208 5947 5673 222 188 21 0 chr6 181856776 181856824 -558418 + L2 LINE L2 3265 3313 0 350 246 0 3 chr6 181857501 181857574 -557668 + AluS SINE Alu 1 57 -243 218 303 98 82 chr6 181857824 181857946 -557296 + MIR SINE MIR 18 141 -67 396 200 0 0 chr6 181858018 181858103 -557139 + CT-rich Low_complexity Low_complexity 1 85 0 2577 122 101 9 chr6 181859733 181860161 -555081 - LTR24 LTR ERV1 0 467 1 907 285 152 8 chr6 181860249 181860736 -554506 + MLT2F LTR ERVL 104 660 -3 248 320 222 7 chr6 181860746 181860899 -554343 - MER5A DNA MER1_type -1 188 3 1761 171 27 0 chr6 181861026 181861319 -553923 - AluJb SINE Alu -11 301 1 1905 234 57 22 chr6 181862182 181862670 -552572 + MLT2B2 LTR ERVL 1 505 -10 211 235 29 44 chr6 181862700 181862768 -552474 + L2 LINE L2 3191 3257 -15 252 0 0 0 chr6 181863411 181863439 -551803 + (A)n Simple_repeat Simple_repeat 1 28 0 1165 201 48 0 chr6 181864510 181864759 -550483 + Tigger2 DNA MER2_type 1 261 -2457 * 1299 161 22 9 chr6 181864754 181864978 -550264 + Tigger2 DNA MER2_type 531 757 -1961 1369 160 48 4 chr6 181865024 181865274 -549968 + Tigger2 DNA MER2_type 2448 2708 -10 2330 92 0 0 chr6 181866840 181867133 -548109 + AluSg SINE Alu 1 293 -17 257 265 116 48 chr6 181867615 181867966 -547276 + L1ME LINE L1 5011 5398 -748 402 253 68 37 chr6 181868125 181868287 -546955 + L1ME LINE L1 5617 5783 -338 415 247 144 89 chr6 181868660 181869174 -546068 + HAL1 LINE L1 435 976 -1531 506 223 103 58 chr6 181869179 181869403 -545839 + HAL1 LINE L1 1059 1292 -1215 325 241 68 0 chr6 181869414 181869570 -545672 + HAL1 LINE L1 1389 1755 -752 397 282 198 22 chr6 181869691 181870060 -545182 + HAL1 LINE L1 2004 2437 -70 983 182 234 84 chr6 181870793 181871139 -544103 + LTR42 LTR ERVL 3 400 -95 230 318 46 20 chr6 181871459 181871610 -543632 - MARNA DNA Mariner -293 293 139 419 216 335 62 chr6 181872489 181872665 -542577 + MER58A DNA MER1_type 1 224 0 807 190 132 17 chr6 181872957 181873131 -542111 + AluJo SINE Alu 97 290 -22 2356 82 3 16 chr6 181873279 181873583 -541659 + AluSq SINE Alu 1 300 -13 2284 94 3 0 chr6 181874899 181875186 -540056 - AluSq SINE Alu -25 288 1 401 275 185 33 chr6 181875343 181875798 -539444 + L1MC/D LINE L1 5269 5792 -2016 574 180 116 35 chr6 181876983 181877172 -538070 + MSTC LTR MaLR 1 200 -165 633 318 70 4 chr6 181878070 181878312 -536930 + MIR SINE MIR 1 258 -4 272 303 38 0 chr6 181878333 181878420 -536822 + MIR SINE MIR 15 108 -100 687 188 101 22 chr6 181878867 181879005 -536237 + FRAM SINE Alu 22 170 -6 2079 96 13 30 chr6 181879276 181879579 -535663 + AluSx SINE Alu 1 298 -14 202 253 160 40 chr6 181880338 181880413 -534829 - MIR SINE MIR -73 135 52 815 145 0 23 chr6 181880507 181880638 -534604 - FLAM_C SINE Alu -5 128 1 449 247 63 19 chr6 181882345 181882503 -532739 - MIR SINE MIR -22 240 76 207 0 0 0 chr6 181882510 181882533 -532709 + (CAA)n Simple_repeat Simple_repeat 2 24 0 201 356 78 0 chr6 181884121 181884211 -531031 - L2 LINE L2 -18 3254 3158 197 259 69 17 chr6 181884513 181884571 -530671 - L2 LINE L2 -1 3312 3252 2481 72 0 3 chr6 181885876 181886182 -529060 + AluSx SINE Alu 3 307 -5 2393 230 130 10 chr6 181886199 181886900 -528342 - L1ME2 LINE L1 -19 6145 5361 12649 111 57 118 chr6 181886900 181887107 -528135 + Tigger1 DNA MER2_type 1 219 -2199 1938 120 57 17 chr6 181887107 181887406 -527836 - AluSx SINE Alu -1 311 1 12649 111 57 118 chr6 181887406 181888638 -526604 + Tigger1 DNA MER2_type 219 1460 -958 1254 184 13 39 chr6 181888638 181888871 -526371 + AluJo SINE Alu 1 227 -85 12649 111 57 118 chr6 181888871 181889775 -525467 + Tigger1 DNA MER2_type 1460 2418 0 873 185 29 21 chr6 181889775 181890018 -525224 - L1ME2 LINE L1 -784 5362 5118 938 68 0 8 chr6 181890328 181890460 -524782 + (CAG)n Simple_repeat Simple_repeat 3 133 0 21 0 0 0 chr6 181891660 181891681 -523561 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 181891842 181891870 -523372 + AT_rich Low_complexity Low_complexity 1 28 0 854 138 0 0 chr6 181891909 181892039 -523203 + Looper DNA T2_type 938 1067 -491 1604 182 32 26 chr6 181892059 181892400 -522842 + Looper DNA T2_type 1179 1521 -37 564 279 92 22 chr6 181892624 181892853 -522389 + MIR SINE MIR 16 260 -2 899 165 0 0 chr6 181893160 181893293 -521949 + AluJo/FLAM SINE Alu 1 133 -169 2296 86 3 0 chr6 181893296 181893587 -521655 + AluSx SINE Alu 1 292 -20 1850 169 0 13 chr6 181894212 181894525 -520717 + AluJo SINE Alu 1 309 -3 22 56 0 0 chr6 181894583 181894619 -520623 + AT_rich Low_complexity Low_complexity 1 36 0 34 42 0 0 chr6 181895551 181895599 -519643 + AT_rich Low_complexity Low_complexity 1 48 0 1758 146 0 0 chr6 181895670 181895923 -519319 + AluSx SINE Alu 47 299 -13 2365 88 7 0 chr6 181896868 181897174 -518068 - AluY SINE Alu -3 308 1 2157 116 36 3 chr6 181897185 181897535 -517707 - AluSq SINE Alu 0 360 1 289 311 67 28 chr6 181898692 181898872 -516370 + L2 LINE L2 2868 3054 -259 2237 118 0 0 chr6 181898972 181899268 -515974 + AluSx SINE Alu 1 296 -16 267 303 109 57 chr6 181901423 181901598 -513644 - MIR SINE MIR -19 243 60 305 289 114 52 chr6 181902021 181902232 -513010 - L1ME LINE L1 -337 5784 5561 250 244 117 43 chr6 181902286 181902516 -512726 - L1ME LINE L1 -1563 4583 4337 269 264 31 63 chr6 181902720 181902879 -512363 - L1ME3A LINE L1 -51 6119 5966 385 250 176 0 chr6 181902901 181903037 -512205 - L1MC5 LINE L1 -462 7499 7340 443 132 33 33 chr6 181903048 181903139 -512103 - L1MC5 LINE L1 -756 7205 7115 1357 150 33 25 chr6 181903430 181903670 -511572 - AluJo SINE Alu -22 290 49 23 0 0 0 chr6 181904014 181904037 -511205 + AT_rich Low_complexity Low_complexity 1 23 0 561 186 133 67 chr6 181905761 181905971 -509271 - L1ME3A LINE L1 -305 5816 5593 2343 89 0 0 chr6 181908854 181909147 -506095 + AluSx SINE Alu 1 293 -19 299 191 60 12 chr6 181909536 181909620 -505622 - L1MC5 LINE L1 -45 7916 7829 889 200 92 60 chr6 181909720 181910055 -505187 - L1MC5 LINE L1 -919 7042 6697 291 316 103 0 chr6 181910631 181910748 -504494 + L2 LINE L2 3142 3270 -2 351 274 165 6 chr6 181910848 181911012 -504230 + MIR SINE MIR 72 261 -1 204 213 21 0 chr6 181911119 181911166 -504076 - L2 LINE L2 -15 3257 3210 1292 139 14 9 chr6 181913524 181913740 -501502 - MER4D LTR ERV1 -686 217 1 * 1649 166 163 0 chr6 181913740 181914064 -501178 + LTR49 LTR ERV1 219 595 0 1058 72 7 0 chr6 181914135 181914274 -500968 - AluSg/x SINE Alu -8 302 163 2076 137 7 10 chr6 181914361 181914661 -500581 - AluSx SINE Alu -12 300 2 2414 110 16 10 chr6 181914662 181915227 -500015 - MER4A LTR ERV1 -28 636 1 835 163 8 0 chr6 181915577 181915706 -499536 - FLAM_C SINE Alu -3 130 1 289 183 37 12 chr6 181915780 181915862 -499380 + MER4B LTR ERV1 1 84 -526 1437 163 8 62 chr6 181915862 181916225 -499017 - MER4A LTR ERV1 0 664 263 553 134 21 10 chr6 181916225 181916322 -498920 - MER4A LTR ERV1 -566 98 1 5206 98 78 38 chr6 181916330 181917490 -497752 - MER4A-int LTR ERV1 -2 6596 3860 1638 93 0 0 chr6 181917495 181917700 -497542 + AluSg/x SINE Alu 85 289 -21 1308 127 34 4 chr6 181917704 181917941 -497301 + MER6 DNA MER2_type 622 865 0 517 79 0 0 chr6 181917942 181918018 -497224 + L1MB2 LINE L1 6089 6164 -7 3754 223 84 32 chr6 181918030 181918551 -496691 + L1M4 LINE L1 550 1042 -5602 3695 100 0 6 chr6 181918551 181919063 -496179 - MER9 LTR ERVK -2 509 1 3754 223 84 32 chr6 181919063 181921500 -493742 + L1M4 LINE L1 1042 3704 -2940 3551 112 4 2 chr6 181921502 181922011 -493231 - MER9 LTR ERVK 0 511 2 2040 66 29 0 chr6 181922012 181922286 -492956 - HERVK9 LTR ERVK 0 5916 5635 6317 84 6 1 chr6 181922383 181923251 -491991 - HERVK9 LTR ERVK -282 5634 4763 4424 57 50 0 chr6 181923252 181923854 -491388 - HERVK9 LTR ERVK -1574 4342 3711 9716 65 1 2 chr6 181923854 181925137 -490105 - HERVK9 LTR ERVK -3130 2786 1506 1273 205 19 4 chr6 181925630 181925893 -489349 + AluJo SINE Alu 43 309 -3 451 69 59 40 chr6 181925893 181925994 -489248 + GA-rich Low_complexity Low_complexity 1 103 0 2140 130 0 13 chr6 181926137 181926453 -488789 - AluSx SINE Alu 0 312 1 1509 141 0 49 chr6 181926453 181926737 -488505 - MER4A LTR ERV1 -23 641 372 555 126 0 11 chr6 181926783 181926878 -488364 - MER4A LTR ERV1 -566 98 5 1547 194 36 66 chr6 181927756 181928195 -487047 - MSTB1 LTR MaLR -6 426 1 1208 227 147 7 chr6 181928195 181928604 -486638 - L1MC3 LINE L1 -1558 6227 5762 4697 209 30 77 chr6 181928752 181928845 -486397 - MER72-int LTR ERV1 -577 4359 4263 1319 160 184 0 chr6 181928845 181929089 -486153 - AluSg SINE Alu -21 289 1 4697 209 30 77 chr6 181929089 181930486 -484756 - MER72-int LTR ERV1 -673 4263 2940 790 209 81 73 chr6 181930578 181930961 -484281 - MER72-int LTR ERV1 -2852 2084 1699 1365 202 35 30 chr6 181931022 181931457 -483785 - MER72-int LTR ERV1 -3437 1499 1063 1804 209 105 26 chr6 181931460 181931605 -483637 + MLT2B2 LTR ERVL 3 135 -380 2082 136 34 55 chr6 181931605 181931913 -483329 + THE1C LTR MaLR 1 301 -74 2525 71 0 0 chr6 181931913 181932224 -483018 - AluY SINE Alu 0 311 1 2082 136 34 55 chr6 181932224 181932298 -482944 + THE1C LTR MaLR 301 375 0 1804 209 105 26 chr6 181932298 181932620 -482622 + MLT2B2 LTR ERVL 135 507 -8 772 274 30 54 chr6 181932627 181933321 -481921 - MER72-int LTR ERV1 -3873 1063 173 4091 143 46 36 chr6 181933721 181933774 -481468 - MER72 LTR ERV1 0 722 671 2135 140 0 3 chr6 181933774 181934082 -481160 - AluSq SINE Alu -2 311 5 4091 143 46 36 chr6 181934082 181934743 -480499 - MER72 LTR ERV1 -51 671 1 571 255 16 11 chr6 181934956 181935144 -480098 - L1MC3 LINE L1 -2020 5765 5577 2585 168 45 16 chr6 181935150 181935709 -479533 - MER34C LTR ERV1 -4 581 7 1140 207 92 14 chr6 181935720 181936261 -478981 - L1MC3 LINE L1 -745 5401 4964 502 196 9 9 chr6 181936342 181936449 -478793 + LTR60 LTR ERV1 1 107 -479 319 196 0 113 chr6 181936490 181936587 -478655 + LTR60 LTR ERV1 111 196 -390 1961 153 0 3 chr6 181936750 181937051 -478191 + AluSx SINE Alu 1 300 -12 2099 126 7 3 chr6 181937625 181937934 -477308 + AluSx SINE Alu 1 310 -2 244 216 52 60 chr6 181938827 181938943 -476299 - TAR1 Satellite telomeric -93 2018 1904 1397 135 8 49 chr6 181938948 181939192 -476050 + AluJo SINE Alu 45 278 -34 297 0 0 0 chr6 181939192 181939225 -476017 + (TC)n Simple_repeat Simple_repeat 2 34 0 1860 107 54 14 chr6 181939521 181939801 -475441 + AluSq SINE Alu 3 293 -20 585 270 13 19 chr6 181939817 181939976 -475266 + MER41D LTR ERV1 390 547 -10 294 238 25 0 chr6 181939984 181940064 -475178 + L1M4 LINE L1 5023 5104 -1042 201 167 0 0 chr6 181940529 181940565 -474677 + (TA)n Simple_repeat Simple_repeat 2 37 0 39 68 0 0 chr6 181941961 181942035 -473207 + AT_rich Low_complexity Low_complexity 1 74 0 2537 53 0 0 chr6 181942107 181942406 -472836 + AluY SINE Alu 1 299 -12 461 49 111 6 chr6 181942540 181942702 -472540 + (TA)n Simple_repeat Simple_repeat 2 180 0 2118 129 29 45 chr6 181943734 181944115 -471127 + THE1C LTR MaLR 1 375 0 31 44 0 0 chr6 181944199 181944244 -470998 + AT_rich Low_complexity Low_complexity 1 45 0 890 279 80 28 chr6 181944621 181945296 -469946 - L1ME3A LINE L1 -202 5968 5259 312 261 172 6 chr6 181945333 181945490 -469752 - L1ME3A LINE L1 -930 5216 5034 226 172 92 69 chr6 181945490 181945577 -469665 - L1 LINE L1 -1134 5012 4924 1735 222 37 26 chr6 181945578 181946068 -469174 - MLT1D LTR MaLR -10 495 1 432 260 162 71 chr6 181946071 181946454 -468788 - L1 LINE L1 -1221 4925 4508 456 233 16 31 chr6 181946454 181946647 -468595 - L1 LINE L1 -2163 3983 3794 1196 289 70 13 chr6 181946647 181947306 -467936 - L2 LINE L2 -4 3309 2616 229 286 51 46 chr6 181947593 181947789 -467453 - MER65A LTR ERV1 0 445 249 270 243 194 0 chr6 181948235 181948338 -466904 + L2 LINE L2 2321 2443 -871 536 293 99 50 chr6 181949013 181949478 -465764 - L1MEd LINE L1 -5285 834 347 792 339 33 25 chr6 181949579 181949974 -465268 - MLT1E LTR MaLR -174 419 22 566 330 82 46 chr6 181951097 181951596 -463646 - L2 LINE L2 -1 3271 2762 192 222 111 0 chr6 181951726 181951780 -463462 - L2 LINE L2 0 3313 3254 2270 111 0 3 chr6 181952295 181952602 -462640 - AluSq SINE Alu -7 306 1 2369 97 52 0 chr6 181952737 181953099 -462143 - L1PA14 LINE L1 0 6161 5781 758 174 75 0 chr6 181953101 181953262 -461980 + LTR64 LTR ERVK 386 558 0 227 260 10 62 chr6 181953565 181953661 -461581 - MLT1H1-int LTR MaLR -1274 97 7 1080 284 53 42 chr6 181953661 181953942 -461300 - MLT1H1 LTR MaLR -25 530 254 1996 142 42 36 chr6 181953942 181954302 -460940 + THE1B LTR MaLR 3 364 0 11024 106 19 8 chr6 181954302 181955864 -459378 + THE1B-int LTR MaLR 1 1580 0 1785 176 42 25 chr6 181955864 181956222 -459020 + THE1B LTR MaLR 1 364 0 1080 284 53 42 chr6 181956222 181956462 -458780 - MLT1H1 LTR MaLR -300 255 1 546 300 169 22 chr6 181956677 181956944 -458298 - L2 LINE L2 -2109 1205 900 466 302 170 37 chr6 181956958 181957652 -457590 + L2 LINE L2 2485 3313 0 227 275 87 47 chr6 181957973 181958122 -457120 - HAL1b LINE L1 -452 896 742 730 131 0 83 chr6 181958193 181958338 -456904 - FLAM_C SINE Alu 0 133 1 302 306 103 52 chr6 181958406 181958736 -456506 - HAL1b LINE L1 -998 350 4 34 42 0 0 chr6 181959009 181959057 -456185 + AT_rich Low_complexity Low_complexity 1 48 0 180 132 0 113 chr6 181961259 181961312 -453930 - L2 LINE L2 0 3313 3267 500 191 0 0 chr6 181962513 181962597 -452645 - AluS SINE Alu -229 84 1 286 226 36 117 chr6 181963443 181963580 -451662 - MIR SINE MIR -1 261 136 1303 150 4 4 chr6 181963629 181963876 -451366 - L1MA4 LINE L1 -5 6295 6049 250 184 0 0 chr6 181963892 181963941 -451301 - L1MA4 LINE L1 -197 6103 6055 325 353 7 20 chr6 181963949 181964099 -451143 - MIR SINE MIR -114 148 1 415 303 68 15 chr6 181966076 181966208 -449034 + MIR3 SINE MIR 30 168 -40 1034 236 112 32 chr6 181969151 181969707 -445535 - L1M4 LINE L1 -1634 4512 3913 303 246 40 16 chr6 181969690 181969816 -445426 - L1M4 LINE L1 -2459 3687 3559 * 5015 154 48 12 chr6 181970091 181971596 -443646 - L1MA7 LINE L1 -4 6287 4736 30000 103 16 58 chr6 181972344 181978763 -436479 - L1PA7 LINE L1 -1 6153 12 4738 162 34 33 chr6 181979937 181981021 -434221 - L1MA7 LINE L1 -1399 4747 3663 1429 45 6 0 chr6 181981040 181981218 -434024 - L1PA4 LINE L1 0 6155 5977 5853 28 0 0 chr6 181981218 181981940 -433302 + L1PA4 LINE L1 5254 5975 -180 1651 227 33 0 chr6 181981955 181982414 -432828 - L1MA7 LINE L1 -2494 3652 3179 410 273 86 0 chr6 181982427 181982566 -432676 - ERVL LTR ERVL -3924 1840 1690 2831 204 73 11 chr6 181982573 181983403 -431839 - L1 LINE L1 -2326 3820 2939 786 41 0 0 chr6 181983850 181983948 -431294 - L1PA5 LINE L1 -2 6152 6055 300 275 22 11 chr6 181984034 181984125 -431117 + CT-rich Low_complexity Low_complexity 5 96 0 426 243 85 75 chr6 181984132 181984569 -430673 + L1MEd LINE L1 708 1148 -4971 1337 139 23 0 chr6 181984594 181984810 -430432 - L1PA10 LINE L1 -2 6166 5946 325 169 78 0 chr6 181984810 181984887 -430355 - L1PA8 LINE L1 -144 6028 5946 * 335 204 61 10 chr6 181984866 181984964 -430278 - L1PA8 LINE L1 -124 6048 5946 327 183 73 0 chr6 181984959 181985041 -430201 - L1PA8 LINE L1 -139 6033 5946 * 316 195 73 0 chr6 181985036 181985118 -430124 - L1PA8 LINE L1 -139 6033 5946 * 327 183 73 0 chr6 181985113 181985195 -430047 - L1PA8 LINE L1 -139 6033 5946 291 185 86 0 chr6 181985190 181985271 -429971 - L1PA8 LINE L1 -139 6033 5946 * 345 194 61 10 chr6 181985250 181985348 -429894 - L1PA8 LINE L1 -124 6048 5946 320 168 99 40 chr6 181985343 181985444 -429798 - L1PA8 LINE L1 -139 6033 5927 * 317 183 73 0 chr6 181985420 181985502 -429740 - L1PA8 LINE L1 -139 6033 5946 * 319 158 85 12 chr6 181985497 181985579 -429663 - L1PA8 LINE L1 -139 6033 5946 * 365 158 73 0 chr6 181985574 181985656 -429586 - L1PA8 LINE L1 -139 6033 5946 342 184 71 20 chr6 181985635 181985733 -429509 - L1PA8 LINE L1 -124 6048 5946 * 327 184 71 20 chr6 181985712 181985810 -429432 - L1PA8 LINE L1 -124 6048 5946 * 309 171 85 12 chr6 181985805 181985887 -429355 - L1PA8 LINE L1 -139 6033 5946 * 327 184 71 20 chr6 181985866 181985964 -429278 - L1PA8 LINE L1 -124 6048 5946 327 183 73 0 chr6 181985959 181986041 -429201 - L1PA8 LINE L1 -139 6033 5946 * 345 204 61 10 chr6 181986020 181986118 -429124 - L1PA8 LINE L1 -124 6048 5946 315 214 61 10 chr6 181986097 181986195 -429047 - L1PA8 LINE L1 -124 6048 5946 * 327 183 73 0 chr6 181986190 181986272 -428970 - L1PA8 LINE L1 -139 6033 5946 296 207 73 0 chr6 181986267 181986349 -428893 - L1PA8 LINE L1 -139 6033 5946 * 327 183 73 0 chr6 181986344 181986426 -428816 - L1PA8 LINE L1 -139 6033 5946 314 195 73 0 chr6 181986421 181986503 -428739 - L1PA8 LINE L1 -139 6033 5946 * 2180 116 4 12 chr6 181986514 181986876 -428366 - L1PA8A LINE L1 -120 6011 5648 350 211 0 53 chr6 181986901 181986996 -428246 - L1MC4 LINE L1 -1339 6703 6614 325 286 0 11 chr6 181986915 181987006 -428236 + L1MC4 LINE L1 6614 6703 -1339 * 2154 124 0 0 chr6 181987017 181987307 -427935 - AluSq SINE Alu -23 290 1 2540 112 27 0 chr6 181987309 181987721 -427521 - L1P4 LINE L1 -478 5690 5268 5922 182 2 8 chr6 181987721 181988757 -426485 - L1PA15-16 LINE L1 -5819 1030 1 1778 214 76 15 chr6 181988797 181989273 -425969 - LTR22 LTR ERVK -4 505 1 6765 152 29 7 chr6 181989427 181991409 -423833 + L1MA8 LINE L1 4083 6118 -173 4874 105 18 1 chr6 181991409 181992145 -423097 - L1MA2 LINE L1 -1 6303 5556 6765 152 29 7 chr6 181992145 181992269 -422973 + L1MA8 LINE L1 6118 6238 -53 994 282 69 32 chr6 181992303 181993044 -422198 + L1ME3A LINE L1 3352 4119 -2027 3742 208 28 31 chr6 181993094 181994108 -421134 + L1 LINE L1 3687 4697 -1449 186 43 0 0 chr6 181994108 181994131 -421111 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 706 299 57 35 chr6 181994197 181994601 -420641 + L1ME3A LINE L1 5539 5951 -219 718 191 93 6 chr6 181994777 181994939 -420303 - AluSp SINE Alu -15 298 123 352 369 60 21 chr6 181995188 181995421 -419821 + L2 LINE L2 2467 2708 -606 2177 41 15 0 chr6 181995424 181995690 -419552 + L1PA5 LINE L1 5881 6150 -4 25 31 0 0 chr6 181995750 181995782 -419460 + AT_rich Low_complexity Low_complexity 1 32 0 376 364 103 23 chr6 181995890 181996192 -419050 + L2 LINE L2 2924 3249 -23 23 65 0 16 chr6 181997105 181997133 -418109 + AT_rich Low_complexity Low_complexity 1 28 -33 387 43 0 0 chr6 181997133 181997180 -418062 + L1PA6 LINE L1 6100 6146 -8 23 65 0 16 chr6 181997180 181997213 -418029 + AT_rich Low_complexity Low_complexity 28 61 0 432 284 64 23 chr6 181998083 181998347 -416895 - L1MC5 LINE L1 -436 7525 7251 218 230 40 14 chr6 181998447 181998521 -416721 + (TA)n Simple_repeat Simple_repeat 2 77 0 439 269 35 101 chr6 181998564 181999137 -416105 - L1MC4a LINE L1 -1225 6583 6049 808 243 44 8 chr6 181999170 181999467 -415775 - L1 LINE L1 -1007 5637 5336 3220 222 99 50 chr6 181999467 182001125 -414117 - L1 LINE L1 -2892 3752 2177 928 70 38 13 chr6 182001125 182001283 -413959 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 3220 222 99 50 chr6 182001283 182002791 -412451 - L1 LINE L1 -4467 2177 471 891 282 89 47 chr6 182002802 182003376 -411866 - L1M4 LINE L1 -2580 3566 2969 1965 188 72 9 chr6 182003378 182003835 -411407 - Tigger5 DNA MER2_type 0 2323 1838 273 308 158 45 chr6 182003888 182004154 -411088 - L3 LINE CR1 -338 1239 944 447 278 47 24 chr6 182004165 182004334 -410908 + LTR33 LTR ERVL 1 173 -348 400 211 105 38 chr6 182004417 182004456 -410786 + LTR33 LTR ERVL 378 413 -108 2065 158 60 26 chr6 182004456 182004472 -410770 - MSTB1 LTR MaLR 0 432 418 420 20 0 0 chr6 182004472 182004521 -410721 + (TG)n Simple_repeat Simple_repeat 2 50 0 2065 158 60 26 chr6 182004521 182004772 -410470 - MSTB1 LTR MaLR -14 418 144 2238 103 0 3 chr6 182004772 182005064 -410178 + AluSq SINE Alu 6 296 -17 2065 158 60 26 chr6 182005064 182005213 -410029 - MSTB1 LTR MaLR -288 144 1 400 211 105 38 chr6 182005213 182005306 -409936 + LTR33 LTR ERVL 413 519 -2 363 292 57 64 chr6 182005323 182005393 -409849 - L3 LINE CR1 -655 922 853 2063 118 3 0 chr6 182005393 182005705 -409537 - AluSg SINE Alu 0 310 1 363 292 57 64 chr6 182005705 182005898 -409344 - L3 LINE CR1 -724 853 661 342 298 145 23 chr6 182005906 182006037 -409205 + MIR SINE MIR 2 148 -114 336 266 263 36 chr6 182006547 182006619 -408623 - L1M4 LINE L1 -2929 3217 3163 2143 136 0 0 chr6 182006619 182006920 -408322 - AluSx SINE Alu -11 301 1 336 266 263 36 chr6 182006920 182007051 -408191 - L1M4 LINE L1 -2983 3163 3063 1462 192 17 41 chr6 182007051 182007342 -407900 - AluJo SINE Alu -11 301 18 336 266 263 36 chr6 182007342 182007393 -407849 - L1M4 LINE L1 -3083 3063 3025 2247 123 7 0 chr6 182007393 182007695 -407547 - AluSx SINE Alu -8 304 1 336 266 263 36 chr6 182007695 182007803 -407439 - L1M4 LINE L1 -3121 3025 2770 300 260 14 14 chr6 182008958 182009031 -406211 - L3 LINE CR1 -947 630 558 2136 132 3 6 chr6 182009357 182009668 -405574 + AluSg SINE Alu 1 310 0 261 57 0 0 chr6 182009683 182009718 -405524 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 293 238 0 0 chr6 182010632 182010695 -404547 - MLT1I LTR MaLR -3 406 344 545 207 59 7 chr6 182010781 182010916 -404326 - MLT1I LTR MaLR -233 176 35 243 254 0 0 chr6 182011648 182011703 -403539 + (CA)n Simple_repeat Simple_repeat 2 56 0 183 129 0 0 chr6 182013145 182013176 -402066 + (TTG)n Simple_repeat Simple_repeat 2 32 0 488 246 47 109 chr6 182013640 182013686 -401556 + MLT1H LTR MaLR 62 109 -433 2251 97 0 31 chr6 182013686 182014007 -401235 + AluY SINE Alu 1 311 0 488 246 47 109 chr6 182014007 182014297 -400945 + MLT1H LTR MaLR 109 375 -167 474 324 127 40 chr6 182014433 182014785 -400457 - L2 LINE L2 -439 2875 2456 2113 134 0 0 chr6 182014785 182015075 -400167 + AluSc SINE Alu 1 290 -19 474 324 127 40 chr6 182015075 182015272 -399970 - L2 LINE L2 -858 2456 2278 694 263 31 57 chr6 182016022 182016250 -398992 - MIR SINE MIR -13 249 28 458 234 125 0 chr6 182016543 182016671 -398571 - LTR33 LTR ERVL 0 521 378 250 355 0 11 chr6 182016766 182016859 -398383 - LTR33 LTR ERVL -364 157 66 185 0 40 0 chr6 182016863 182016888 -398354 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2065 99 0 21 chr6 182016888 182017170 -398072 - AluSg SINE Alu -34 276 1 504 282 139 23 chr6 182017432 182017691 -397551 + L2 LINE L2 3014 3302 -11 3637 169 28 68 chr6 182018182 182018326 -396916 + LTR39 LTR ERV1 51 199 -584 1005 42 17 0 chr6 182018326 182018446 -396796 + L1PA4 LINE L1 6034 6155 0 3637 169 28 68 chr6 182018446 182018749 -396493 + LTR39 LTR ERV1 199 457 -326 2065 147 0 0 chr6 182018749 182019048 -396194 - AluSx SINE Alu -13 299 1 3637 169 28 68 chr6 182019048 182019362 -395880 + LTR39 LTR ERV1 457 782 -1 505 252 61 20 chr6 182019369 182019516 -395726 + MIR SINE MIR 46 198 -64 273 191 0 0 chr6 182024411 182024458 -390784 - L1PA11 LINE L1 -182 5992 5946 * 353 183 73 0 chr6 182024453 182024535 -390707 - L1PA8 LINE L1 -139 6033 5946 336 224 61 10 chr6 182024514 182024612 -390630 - L1PA8 LINE L1 -124 6048 5946 * 336 224 61 10 chr6 182024591 182024689 -390553 - L1PA8 LINE L1 -124 6048 5946 * 351 206 72 10 chr6 182024668 182024765 -390477 - L1PA8 LINE L1 -124 6048 5946 * 388 194 61 10 chr6 182024744 182024842 -390400 - L1PA8 LINE L1 -124 6048 5946 367 204 61 10 chr6 182024821 182024919 -390323 - L1PA8 LINE L1 -124 6048 5946 * 328 204 71 20 chr6 182024898 182024996 -390246 - L1PA8 LINE L1 -124 6048 5946 * 346 214 61 10 chr6 182024975 182025073 -390169 - L1PA8 LINE L1 -124 6048 5946 336 224 61 10 chr6 182025052 182025150 -390092 - L1PA8 LINE L1 -124 6048 5946 * 346 214 61 10 chr6 182025129 182025227 -390015 - L1PA8 LINE L1 -124 6048 5946 336 224 61 10 chr6 182025206 182025304 -389938 - L1PA8 LINE L1 -124 6048 5946 * 330 216 72 10 chr6 182025283 182025380 -389862 - L1PA8 LINE L1 -124 6048 5946 * 346 214 61 10 chr6 182025359 182025457 -389785 - L1PA8 LINE L1 -124 6048 5946 336 224 61 10 chr6 182025436 182025534 -389708 - L1PA8 LINE L1 -124 6048 5946 * 336 224 61 10 chr6 182025513 182025611 -389631 - L1PA8 LINE L1 -124 6048 5946 * 351 206 72 10 chr6 182025590 182025687 -389555 - L1PA8 LINE L1 -124 6048 5946 * 367 204 61 10 chr6 182025666 182025764 -389478 - L1PA8 LINE L1 -124 6048 5946 328 204 71 20 chr6 182025743 182025841 -389401 - L1PA8 LINE L1 -124 6048 5946 * 346 214 61 10 chr6 182025820 182025918 -389324 - L1PA8 LINE L1 -124 6048 5946 336 224 61 10 chr6 182025897 182025995 -389247 - L1PA8 LINE L1 -124 6048 5946 * 2389 112 9 15 chr6 182025963 182026369 -388873 - L1PA8A LINE L1 -86 6068 5648 228 159 0 0 chr6 182026388 182026432 -388810 + LTR66 LTR ERVL 398 441 -169 374 121 15 0 chr6 182026434 182026500 -388742 + (TA)n Simple_repeat Simple_repeat 2 68 0 2146 124 0 0 chr6 182026500 182026790 -388452 - AluSq SINE Alu -23 290 1 2770 109 24 0 chr6 182026792 182027205 -388037 - L1P4 LINE L1 -478 5690 5268 6332 182 2 7 chr6 182027205 182028239 -387003 - L1PA15-16 LINE L1 -5819 1030 2 2011 212 76 15 chr6 182028279 182028755 -386487 - LTR22 LTR ERVK -4 505 1 7333 155 29 7 chr6 182028910 182030892 -384350 + L1MA8 LINE L1 4083 6118 -173 5269 105 18 1 chr6 182030892 182031628 -383614 - L1MA2 LINE L1 -1 6303 5556 7333 155 29 7 chr6 182031628 182031752 -383490 + L1MA8 LINE L1 6118 6238 -53 1308 275 67 38 chr6 182031767 182032527 -382715 + L1ME3A LINE L1 3338 4119 -2027 4196 205 28 31 chr6 182032577 182033591 -381651 + L1 LINE L1 3687 4697 -1449 186 43 0 0 chr6 182033591 182033614 -381628 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 828 315 53 32 chr6 182033649 182034084 -381158 + L1ME3A LINE L1 5508 5951 -219 786 191 93 6 chr6 182034260 182034422 -380820 - AluSp SINE Alu -15 298 123 320 378 60 21 chr6 182034671 182034904 -380338 + L2 LINE L2 2467 2708 -606 2321 41 15 0 chr6 182034907 182035173 -380069 + L1PA5 LINE L1 5881 6150 -4 25 31 0 0 chr6 182035233 182035265 -379977 + AT_rich Low_complexity Low_complexity 1 32 0 362 364 103 23 chr6 182035373 182035675 -379567 + L2 LINE L2 2924 3249 -23 23 65 0 16 chr6 182036588 182036616 -378626 + AT_rich Low_complexity Low_complexity 1 28 -33 414 43 0 0 chr6 182036616 182036663 -378579 + L1PA6 LINE L1 6100 6146 -8 23 65 0 16 chr6 182036663 182036696 -378546 + AT_rich Low_complexity Low_complexity 28 61 0 249 246 45 64 chr6 182037347 182037457 -377785 - L1ME3 LINE L1 -76 6086 5979 514 292 61 19 chr6 182037569 182037833 -377409 - L1MC5 LINE L1 -436 7525 7251 218 230 40 14 chr6 182037933 182038007 -377235 + (TA)n Simple_repeat Simple_repeat 2 77 0 648 267 35 101 chr6 182038050 182038623 -376619 - L1MC4a LINE L1 -1225 6583 6049 912 248 75 59 chr6 182038636 182038953 -376289 - L1M4 LINE L1 -991 5653 5336 3691 215 99 63 chr6 182038953 182040624 -374618 - L1M4 LINE L1 -2892 3752 2143 1184 51 28 6 chr6 182040624 182040800 -374442 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3691 215 99 63 chr6 182040800 182042333 -372909 - L1M4 LINE L1 -4501 2143 471 358 262 105 59 chr6 182042344 182042916 -372326 - L1M4 LINE L1 -2580 3566 2969 2173 188 72 9 chr6 182042918 182043375 -371867 - Tigger5 DNA MER2_type 0 2323 1838 281 304 158 45 chr6 182043428 182043694 -371548 - L3 LINE CR1 -338 1239 944 514 272 47 24 chr6 182043705 182043874 -371368 + LTR33 LTR ERVL 1 173 -348 450 211 105 38 chr6 182043957 182043996 -371246 + LTR33 LTR ERVL 378 413 -108 2254 158 60 26 chr6 182043996 182044012 -371230 - MSTB1 LTR MaLR 0 432 418 348 24 0 0 chr6 182044012 182044053 -371189 + (TG)n Simple_repeat Simple_repeat 2 42 0 2254 158 60 26 chr6 182044053 182044304 -370938 - MSTB1 LTR MaLR -14 418 144 2234 103 0 3 chr6 182044304 182044596 -370646 + AluSq SINE Alu 6 296 -17 2254 158 60 26 chr6 182044596 182044745 -370497 - MSTB1 LTR MaLR -288 144 1 450 211 105 38 chr6 182044745 182044838 -370404 + LTR33 LTR ERVL 413 519 -2 342 292 57 64 chr6 182044855 182044925 -370317 - L3 LINE CR1 -655 922 853 2045 121 3 0 chr6 182044925 182045237 -370005 - AluSg SINE Alu 0 310 1 342 292 57 64 chr6 182045237 182045430 -369812 - L3 LINE CR1 -724 853 661 330 298 145 23 chr6 182045438 182045569 -369673 + MIR SINE MIR 2 148 -114 2116 139 0 0 chr6 182046151 182046452 -368790 - AluSx SINE Alu -11 301 1 1419 194 7 32 chr6 182046583 182046867 -368375 - AluJo SINE Alu -12 300 24 2213 126 7 0 chr6 182046924 182047225 -368017 - AluSx SINE Alu -9 303 1 301 260 14 14 chr6 182048488 182048561 -366681 - L3 LINE CR1 -947 630 558 2124 132 3 6 chr6 182048887 182049198 -366044 + AluSg SINE Alu 1 310 0 261 57 0 0 chr6 182049213 182049248 -365994 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 613 235 142 5 chr6 182050162 182050446 -364796 - MLT1I LTR MaLR -3 406 35 243 254 0 0 chr6 182051178 182051233 -364009 + (CA)n Simple_repeat Simple_repeat 2 56 0 226 256 158 0 chr6 182052551 182052633 -362609 + L1ME4a LINE L1 6004 6098 -23 183 129 0 0 chr6 182052675 182052706 -362536 + (TTG)n Simple_repeat Simple_repeat 2 32 0 585 246 47 109 chr6 182053170 182053216 -362026 + MLT1H LTR MaLR 62 109 -433 2267 93 0 31 chr6 182053216 182053537 -361705 + AluY SINE Alu 1 311 0 585 246 47 109 chr6 182053537 182053827 -361415 + MLT1H LTR MaLR 109 375 -167 371 324 127 40 chr6 182053963 182054315 -360927 - L2 LINE L2 -439 2875 2456 2121 134 0 0 chr6 182054315 182054606 -360636 + AluSc SINE Alu 1 291 -18 371 324 127 40 chr6 182054606 182054803 -360439 - L2 LINE L2 -858 2456 2278 676 260 30 69 chr6 182055553 182055784 -359458 - MIR SINE MIR -13 249 28 458 234 125 0 chr6 182056077 182056205 -359037 - LTR33 LTR ERVL 0 521 378 255 355 0 11 chr6 182056300 182056393 -358849 - LTR33 LTR ERVL -364 157 66 185 0 40 0 chr6 182056397 182056422 -358820 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2090 96 0 21 chr6 182056422 182056704 -358538 - AluSg SINE Alu -34 276 1 504 282 139 23 chr6 182056966 182057225 -358017 + L2 LINE L2 3014 3302 -11 3584 172 28 68 chr6 182057716 182057860 -357382 + LTR39 LTR ERV1 51 199 -584 999 42 17 0 chr6 182057860 182057980 -357262 + L1PA4 LINE L1 6034 6155 0 3584 172 28 68 chr6 182057980 182058283 -356959 + LTR39 LTR ERV1 199 457 -326 2042 151 0 0 chr6 182058283 182058582 -356660 - AluSx SINE Alu -13 299 1 3584 172 28 68 chr6 182058582 182058896 -356346 + LTR39 LTR ERV1 457 782 -1 505 252 61 20 chr6 182058903 182059050 -356192 + MIR SINE MIR 46 198 -64 314 246 42 70 chr6 182060214 182060356 -354886 + MIR SINE MIR 47 184 -78 340 248 92 35 chr6 182061039 182061180 -354062 - L2 LINE L2 -1 3271 3123 189 267 123 96 chr6 182061417 182061563 -353679 - MIR SINE MIR -6 256 107 524 114 49 154 chr6 182061563 182061627 -353615 - MSTA LTR MaLR 0 428 382 1732 120 130 0 chr6 182061627 182061747 -353495 + AluJb SINE Alu 1 104 -208 324 0 0 0 chr6 182061747 182061783 -353459 + (CA)n Simple_repeat Simple_repeat 2 37 0 1732 120 130 0 chr6 182061783 182061938 -353304 + AluJb SINE Alu 104 312 0 524 114 49 154 chr6 182061938 182061996 -353246 - MSTA LTR MaLR -46 382 319 447 74 0 0 chr6 182062009 182062063 -353179 + Alu SINE Alu 242 295 -15 2145 122 0 3 chr6 182062679 182062973 -352269 + AluSq SINE Alu 1 293 -20 1374 234 56 36 chr6 182062974 182063419 -351823 + LTR37B LTR ERV1 15 468 0 210 304 193 25 chr6 182063889 182064050 -351192 - MIR SINE MIR -55 207 20 555 135 0 0 chr6 182064050 182064146 -351096 + (TCCC)n Simple_repeat Simple_repeat 4 99 0 649 200 174 0 chr6 182064150 182064305 -350937 - L2 LINE L2 -14 3299 3118 396 0 0 0 chr6 182064880 182064924 -350318 + (CA)n Simple_repeat Simple_repeat 2 45 0 519 226 36 36 chr6 182065500 182065668 -349574 + MER5B DNA MER1_type 11 178 0 327 286 0 0 chr6 182065893 182065984 -349258 - MIR SINE MIR -108 154 64 940 188 0 6 chr6 182067228 182067393 -347849 - FRAM SINE Alu -15 161 1 1809 219 37 42 chr6 182067541 182067998 -347244 - MLT1E3 LTR MaLR -9 615 161 302 262 93 28 chr6 182068228 182068335 -346907 + MIR SINE MIR 75 188 -74 414 284 180 28 chr6 182068501 182068712 -346530 + L1ME LINE L1 5532 5683 -438 186 236 191 34 chr6 182069291 182069380 -345862 + L2 LINE L2 3167 3269 -3 4887 96 43 34 chr6 182069551 182069973 -345269 - MER4E LTR ERV1 0 779 345 2261 107 0 7 chr6 182069973 182070273 -344969 + AluSg SINE Alu 1 298 -12 4887 96 43 34 chr6 182070273 182070622 -344620 - MER4E LTR ERV1 -434 345 1 262 308 25 33 chr6 182070864 182070984 -344258 + MIR SINE MIR 20 138 -124 202 401 39 22 chr6 182071307 182071489 -343753 + MER5A DNA MER1_type 2 186 -3 615 234 76 35 chr6 182071634 182071805 -343437 - MLT1K LTR MaLR -16 572 395 3953 107 30 50 chr6 182071906 182072563 -342679 - LTR9B LTR ERV1 0 644 1 2104 123 7 3 chr6 182073570 182073870 -341372 - AluSq SINE Alu -12 301 1 2330 97 0 0 chr6 182075174 182075474 -339768 - AluSq SINE Alu -13 300 1 36 62 0 0 chr6 182075654 182075718 -339524 + AT_rich Low_complexity Low_complexity 1 64 0 1465 192 0 11 chr6 182075718 182075984 -339258 - AluJo SINE Alu -20 292 30 212 249 17 45 chr6 182076268 182076445 -338797 + (CA)n Simple_repeat Simple_repeat 2 173 0 219 256 12 38 chr6 182076514 182076674 -338568 + (CA)n Simple_repeat Simple_repeat 2 157 0 221 249 17 45 chr6 182076783 182076960 -338282 + (CA)n Simple_repeat Simple_repeat 2 173 0 269 263 17 29 chr6 182077134 182077309 -337933 + (CA)n Simple_repeat Simple_repeat 2 174 0 440 320 3 14 chr6 182078700 182079063 -336179 + (TG)n Simple_repeat Simple_repeat 1 358 0 327 313 0 15 chr6 182079079 182079210 -336032 + (TG)n Simple_repeat Simple_repeat 1 129 0 * 347 311 11 27 chr6 182079161 182079344 -335898 + (TATG)n Simple_repeat Simple_repeat 1 180 0 * 512 279 0 17 chr6 182079245 182079424 -335818 + (TG)n Simple_repeat Simple_repeat 1 176 0 259 333 17 23 chr6 182079371 182079545 -335697 + (TATG)n Simple_repeat Simple_repeat 4 176 0 * 264 234 0 16 chr6 182079977 182080041 -335201 - Tigger4(Zombi) DNA MER2_type -11 2720 2658 183 267 0 0 chr6 182080289 182080334 -334908 - MIR SINE MIR -55 153 109 1875 148 99 0 chr6 182080503 182080867 -334375 - Ricksha DNA DNA -9 2845 2446 705 94 0 0 chr6 182080868 182080964 -334278 - Ricksha DNA DNA -1158 96 1 471 287 22 33 chr6 182081054 182081235 -334007 + L1ME LINE L1 5603 5781 -340 29 60 0 0 chr6 182083496 182083546 -331696 + AT_rich Low_complexity Low_complexity 1 50 0 584 167 46 0 chr6 182083546 182083654 -331588 - AluJb SINE Alu -26 286 174 5056 184 37 13 chr6 182083719 182084400 -330842 - L1MA4 LINE L1 0 6300 5637 2268 80 3 32 chr6 182084400 182084713 -330529 - AluSc SINE Alu -5 304 1 2134 125 0 3 chr6 182084716 182085020 -330222 - AluSg SINE Alu -7 303 1 5056 184 37 13 chr6 182085020 182085839 -329403 - L1MA4 LINE L1 -664 5636 4763 1656 182 3 7 chr6 182085854 182086140 -329102 + AluJo SINE Alu 13 297 -15 235 297 90 9 chr6 182086886 182086997 -328245 - L2 LINE L2 -1 3312 3193 360 231 19 29 chr6 182087096 182087200 -328042 - MER5B DNA MER1_type 0 178 76 28 48 0 0 chr6 182087268 182087310 -327932 + AT_rich Low_complexity Low_complexity 1 42 0 5549 161 36 4 chr6 182087310 182088420 -326822 - L1MA4 LINE L1 -2 6298 5159 4143 172 14 20 chr6 182088417 182089225 -326017 - L1 LINE L1 -816 5330 4528 * 1105 138 7 124 chr6 182089224 182089388 -325854 - L1 LINE L1 -2392 3754 3573 * 2162 52 7 0 chr6 182089388 182089658 -325584 - L1PA5 LINE L1 -6 6148 5877 1105 138 7 124 chr6 182089658 182089682 -325560 - L1 LINE L1 -2573 3573 3548 188 33 0 33 chr6 182089682 182089712 -325530 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 2244 42 0 0 chr6 182089712 182089977 -325265 - L1PA3 LINE L1 -13 6142 5878 1105 138 7 124 chr6 182089977 182090061 -325181 - L1 LINE L1 -2596 3550 3512 * 1184 314 17 97 chr6 182090058 182090462 -324780 - L1M1 LINE L1 -3981 3584 3213 769 176 0 0 chr6 182090478 182090597 -324645 - AluSq/x SINE Alu -192 120 2 3267 87 63 33 chr6 182090598 182091141 -324101 - L1M1 LINE L1 -4338 3227 2669 * 6518 169 39 44 chr6 182091138 182092101 -323141 - L1M1 LINE L1 -6247 1318 416 986 149 77 10 chr6 182092101 182092309 -322933 - L1PA2 LINE L1 -2 6153 5932 6518 169 39 44 chr6 182092309 182092713 -322529 - L1M1 LINE L1 -7149 416 12 283 279 23 0 chr6 182095144 182095230 -320012 + (TCCA)n Simple_repeat Simple_repeat 1 88 0 1067 170 22 40 chr6 182095336 182095559 -319683 - MER20 DNA MER1_type 0 219 1 1118 296 39 9 chr6 182096732 182097335 -317907 + L2 LINE L2 2659 3280 -33 1493 61 36 5 chr6 182099073 182099269 -315973 + L1PA5 LINE L1 5937 6138 -16 1029 234 37 0 chr6 182099822 182100036 -315206 - MER58A DNA MER1_type 0 224 3 411 171 57 0 chr6 182100058 182100128 -315114 - MER58A DNA MER1_type -31 76 3 695 229 131 23 chr6 182100685 182100899 -314343 - MIR SINE MIR -8 254 18 26 30 0 0 chr6 182101037 182101070 -314172 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr6 182101105 182101128 -314114 + AT_rich Low_complexity Low_complexity 1 23 0 262 229 16 0 chr6 182101218 182101279 -313963 + L1ME4a LINE L1 5985 6046 -75 9006 200 76 13 chr6 182101300 182102544 -312698 - L1 LINE L1 -1314 4832 3394 1993 132 44 0 chr6 182102544 182102839 -312403 - AluSx SINE Alu -4 308 1 9006 200 76 13 chr6 182102839 182103762 -311480 - L1 LINE L1 -2752 3394 2530 2045 210 40 50 chr6 182104174 182104717 -310525 + LTR57-int LTR ERVL 310 847 -4496 3914 186 67 64 chr6 182104829 182104901 -310341 + LOR1-int LTR ERV1 786 856 -5902 387 0 0 0 chr6 182104901 182104944 -310298 + (TG)n Simple_repeat Simple_repeat 2 44 0 3914 186 67 64 chr6 182104944 182105700 -309542 + LOR1-int LTR ERV1 856 1609 -5149 1252 257 3 10 chr6 182105700 182106000 -309242 - AluJo SINE Alu -14 298 1 3914 186 67 64 chr6 182106000 182106685 -308557 + LOR1-int LTR ERV1 1609 2476 -4282 2006 162 118 3 chr6 182106731 182107113 -308129 + MSTB LTR MaLR 1 426 0 796 158 44 54 chr6 182107158 182107361 -307881 + LOR1-int LTR ERV1 3536 3736 -2862 794 223 110 45 chr6 182107438 182107623 -307619 + LOR1-int LTR ERV1 3732 3904 -2427 1406 176 108 7 chr6 182107623 182107901 -307341 - AluJb SINE Alu -6 306 1 794 223 110 45 chr6 182107901 182108268 -306974 + LOR1-int LTR ERV1 3904 4344 -1987 1440 214 30 0 chr6 182108277 182108543 -306699 + AluJo SINE Alu 1 274 -38 207 0 0 0 chr6 182108559 182108582 -306660 + (TC)n Simple_repeat Simple_repeat 2 24 0 683 132 0 53 chr6 182108583 182108773 -306469 + (TA)n Simple_repeat Simple_repeat 1 180 0 389 210 30 90 chr6 182108828 182109028 -306214 + LOR1-int LTR ERV1 4295 4482 -1849 2631 172 76 21 chr6 182109275 182109554 -305688 + LTR64 LTR ERVK 1 263 -295 8430 52 1 0 chr6 182109554 182110518 -304724 - LTR5 LTR ERVK -4 965 1 2631 172 76 21 chr6 182110518 182110767 -304475 + LTR64 LTR ERVK 263 558 0 207 0 0 0 chr6 182161085 182161108 -254134 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 234 134 41 62 chr6 182161559 182161656 -253586 + (CACAA)n Simple_repeat Simple_repeat 2 96 0 263 239 6 51 chr6 182161792 182161968 -253274 + (CAAA)n Simple_repeat Simple_repeat 4 171 0 220 205 64 26 chr6 182163851 182164007 -251235 + (CACAA)n Simple_repeat Simple_repeat 5 166 0 222 91 0 0 chr6 182164470 182164503 -250739 + (CAT)n Simple_repeat Simple_repeat 3 35 0 1122 231 109 19 chr6 182167291 182167602 -247640 - MER44D DNA MER2_type 0 609 1 768 262 11 0 chr6 182168059 182168250 -246992 - MLT1A1 LTR MaLR 0 365 173 267 310 44 0 chr6 182168302 182168415 -246827 - MLT1A1 LTR MaLR -186 179 62 258 204 31 20 chr6 182169499 182169597 -245645 + (CAA)n Simple_repeat Simple_repeat 3 101 0 209 197 28 42 chr6 182169830 182169901 -245341 + (CACAG)n Simple_repeat Simple_repeat 2 71 0 2194 79 0 4 chr6 182170229 182170495 -244747 - AluSq SINE Alu -48 265 1 909 123 0 0 chr6 182170503 182170625 -244617 - FLAM_C SINE Alu -7 136 15 1576 80 0 24 chr6 182170663 182170876 -244366 - AluY SINE Alu -2 309 102 1900 118 17 28 chr6 182170971 182171260 -243982 + AluSx SINE Alu 1 286 -26 646 148 10 0 chr6 182171397 182171498 -243744 - FRAM SINE Alu -73 103 2 1297 100 0 59 chr6 182171897 182172117 -243125 + AluSx SINE Alu 1 207 -105 492 322 35 15 chr6 182174300 182174502 -240740 - L1M4 LINE L1 -3430 2716 2511 368 198 26 43 chr6 182174508 182174624 -240618 - L1MC2 LINE L1 -1 6343 6230 337 237 0 0 chr6 182175132 182175208 -240034 - HAL1 LINE L1 -870 1637 1562 669 244 142 14 chr6 182175409 182175684 -239558 + L1 LINE L1 4535 4844 -1302 400 314 34 14 chr6 182175745 182176041 -239201 - L1ME3A LINE L1 -204 5966 5665 318 183 0 14 chr6 182176372 182176443 -238799 - L1 LINE L1 -3308 2838 2769 186 71 0 0 chr6 182176449 182176477 -238765 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1899 125 32 4 chr6 182176477 182176753 -238489 - AluSx SINE Alu -27 285 2 1945 235 14 8 chr6 182176753 182177247 -237995 - L1 LINE L1 -2203 3943 3447 1679 232 16 0 chr6 182177249 182177620 -237622 - MSTB LTR MaLR -49 377 1 1251 181 34 79 chr6 182177620 182178001 -237241 - MSTB-int LTR MaLR 0 1651 1288 237 241 19 0 chr6 182178366 182178420 -236822 - Tigger3(Golem) DNA MER2_type 0 3029 2975 595 219 23 0 chr6 182178490 182178618 -236624 - Tigger3(Golem) DNA MER2_type -2896 133 3 639 239 43 24 chr6 182178967 182179176 -236066 - MLT1A2 LTR MaLR -3 371 159 190 209 104 30 chr6 182179224 182179291 -235951 + L2 LINE L2 3242 3313 0 2402 99 0 3 chr6 182179648 182179950 -235292 - AluSq SINE Alu -12 301 1 296 137 98 0 chr6 182179977 182180028 -235214 - Charlie4 DNA MER1_type -23 1938 1883 1679 174 0 16 chr6 182180029 182180334 -234908 - AluJo SINE Alu -1 311 12 359 216 0 72 chr6 182180343 182180440 -234802 - Charlie4 DNA MER1_type -1687 274 185 603 205 0 0 chr6 182180440 182180567 -234675 - AluJb SINE Alu -6 306 180 362 267 82 7 chr6 182180569 182180715 -234527 - Charlie4 DNA MER1_type -1769 192 36 663 197 0 36 chr6 182181208 182181345 -233897 - FLAM_C SINE Alu -10 133 2 348 179 0 13 chr6 182181686 182181764 -233478 + AluY SINE Alu 208 284 -17 2379 107 7 3 chr6 182181957 182182267 -232975 + AluSp SINE Alu 1 311 -2 285 258 208 25 chr6 182182602 182182722 -232520 + MER5B DNA MER1_type 48 178 0 2266 123 0 0 chr6 182182725 182183027 -232215 + AluSx SINE Alu 1 302 -10 536 301 21 16 chr6 182183501 182183687 -231555 + MIR SINE MIR 74 260 -2 215 167 0 42 chr6 182184639 182184711 -230531 + CT-rich Low_complexity Low_complexity 1 69 0 240 122 0 0 chr6 182184907 182184948 -230294 + (TCC)n Simple_repeat Simple_repeat 1 41 0 232 48 48 0 chr6 182185256 182185298 -229944 + (TA)n Simple_repeat Simple_repeat 2 45 0 2095 84 11 18 chr6 182185387 182185673 -229569 - AluSx SINE Alu -28 284 1 873 157 235 55 chr6 182186316 182186476 -228766 - AluJo SINE Alu -1 301 171 191 35 0 35 chr6 182186476 182186505 -228737 + (CGGGGG)n Simple_repeat Simple_repeat 3 30 0 873 157 235 55 chr6 182186505 182186599 -228643 - AluJo SINE Alu -131 171 1 203 171 0 0 chr6 182187181 182187216 -228026 + MIR SINE MIR 105 139 -123 677 14 0 0 chr6 182187660 182187733 -227509 - tRNA-Val-GTT tRNA tRNA -3 73 1 2407 48 16 19 chr6 182187938 182188250 -226992 + AluY SINE Alu 1 311 0 243 150 0 0 chr6 182188357 182188397 -226845 - Zaphod DNA AcHobo -402 3629 3590 * 987 198 82 50 chr6 182188396 182188835 -226407 - Zaphod DNA AcHobo -3047 984 532 196 271 135 0 chr6 182188952 182189048 -226194 + L2 LINE L2 1882 1990 -1324 2310 92 13 0 chr6 182190343 182190648 -224594 + AluSc SINE Alu 1 309 0 546 162 0 40 chr6 182190672 182190771 -224471 - AluJ/FLAM SINE Alu -210 102 8 672 0 0 0 chr6 182191457 182191530 -223712 - tRNA-Lys-AAG tRNA tRNA -3 73 1 697 0 0 0 chr6 182191873 182191947 -223295 - tRNA-Val-GTG tRNA tRNA -2 74 1 3965 251 24 24 chr6 182193629 182195029 -220213 - L1PA15-16 LINE L1 -2882 3967 2563 2231 119 0 0 chr6 182195029 182195324 -219918 + AluSx SINE Alu 1 295 -17 3965 251 24 24 chr6 182195324 182195935 -219307 - L1PA15-16 LINE L1 -4286 2563 1954 524 337 95 26 chr6 182196018 182196427 -218815 + L1ME LINE L1 5350 5730 -391 39 74 0 0 chr6 182196442 182196523 -218719 + AT_rich Low_complexity Low_complexity 1 81 0 1277 95 58 0 chr6 182196671 182196860 -218382 + L1PA3 LINE L1 5955 6154 -1 27 0 0 0 chr6 182196860 182196887 -218355 + AT_rich Low_complexity Low_complexity 1 27 0 1508 162 37 26 chr6 182196894 182197166 -218076 - AluJo SINE Alu -25 287 13 850 129 27 97 chr6 182197332 182197518 -217724 + AluSx SINE Alu 3 175 -137 320 129 0 48 chr6 182197614 182197676 -217566 + AluSp/q SINE Alu 237 295 -8 22 0 0 0 chr6 182197678 182197700 -217542 + AT_rich Low_complexity Low_complexity 1 22 0 200 246 0 43 chr6 182198149 182198218 -217024 + (TTGGGG)n Simple_repeat Simple_repeat 1 66 0 1401 49 6 0 chr6 182198289 182198451 -216791 - AluSg SINE Alu -147 163 1 2516 51 6 13 chr6 182198478 182198791 -216451 - AluY SINE Alu 0 311 1 1548 73 10 0 chr6 182199677 182199869 -215373 + AluY SINE Alu 1 194 -117 198 71 0 0 chr6 182200580 182200608 -214634 + (T)n Simple_repeat Simple_repeat 1 28 0 1793 89 8 4 chr6 182200624 182200859 -214383 - AluSp SINE Alu -77 236 1 321 326 22 0 chr6 182201453 182201545 -213697 - L1MC4 LINE L1 -1335 6707 6614 * 397 261 11 11 chr6 182201492 182201584 -213658 + L1MC4 LINE L1 6612 6703 -1339 329 244 236 0 chr6 182201840 182201963 -213279 - L1ME4a LINE L1 -1 6120 5969 25 31 0 0 chr6 182202036 182202068 -213174 + AT_rich Low_complexity Low_complexity 1 32 0 2623 40 0 3 chr6 182202196 182202492 -212750 + AluY SINE Alu 1 295 -16 311 296 73 22 chr6 182202776 182202955 -212287 - L1MC5 LINE L1 -481 7480 7293 228 135 0 0 chr6 182202923 182202960 -212282 - L1MC4 LINE L1 -547 7495 7459 * 2223 116 0 6 chr6 182203068 182203379 -211863 - AluSg SINE Alu -1 309 1 365 210 32 127 chr6 182203590 182203696 -211546 - LTR8 LTR ERV1 -547 144 56 7002 104 14 10 chr6 182203696 182204661 -210581 + LTR5 LTR ERVK 1 969 0 365 210 32 127 chr6 182204661 182204711 -210531 - LTR8 LTR ERV1 -635 56 3 1032 272 116 19 chr6 182204885 182205411 -209831 - L1ME3A LINE L1 -14 6156 5580 2514 69 7 0 chr6 182206481 182206785 -208457 - AluY SINE Alu -5 306 1 1575 193 7 30 chr6 182206789 182206949 -208293 - AluJb SINE Alu -18 294 143 2236 112 10 13 chr6 182206949 182207262 -207980 - AluSx SINE Alu 0 312 1 1575 193 7 30 chr6 182207262 182207402 -207840 - AluJb SINE Alu -169 143 1 391 328 8 17 chr6 182207645 182207764 -207478 - L2 LINE L2 -1 3271 3154 472 274 91 0 chr6 182207848 182208045 -207197 - MER112 DNA MER1_type -31 229 15 1783 162 19 29 chr6 182208063 182208371 -206871 + AluJo SINE Alu 1 305 -7 1039 191 0 6 chr6 182208380 182208553 -206689 + FAM SINE Alu 3 174 -1 632 217 0 0 chr6 182208553 182208668 -206574 + AluSc SINE Alu 132 246 -63 2263 43 7 25 chr6 182209038 182209317 -205925 + AluY SINE Alu 31 304 -7 22 0 0 0 chr6 182209824 182209846 -205396 + GC_rich Low_complexity Low_complexity 1 22 0 234 180 0 0 chr6 182210400 182210461 -204781 + GA-rich Low_complexity Low_complexity 3 63 0 283 270 200 0 chr6 182211704 182211804 -203438 + MIR SINE MIR 7 126 -136 460 212 133 24 chr6 182212212 182212377 -202865 - MER112 DNA MER1_type -60 200 18 2164 114 7 0 chr6 182212666 182212956 -202286 - AluSx SINE Alu -20 292 1 2267 97 0 0 chr6 182213036 182213354 -201888 - AluSc SINE Alu 0 309 3 943 108 8 0 chr6 182214564 182214694 -200548 + AluY SINE Alu 166 296 -15 2163 75 0 4 chr6 182216392 182216673 -198569 + AluY SINE Alu 1 280 -31 180 0 0 0 chr6 182216681 182216701 -198541 + (CAA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr6 182216728 182216748 -198494 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 916 144 6 123 chr6 182216750 182217090 -198152 - AluY SINE Alu -1 310 11 343 286 54 34 chr6 182217392 182217539 -197703 + L1M4 LINE L1 3023 3172 -2974 510 218 98 17 chr6 182219251 182219283 -195959 - MER46C DNA MER2_type -65 273 245 450 281 39 0 chr6 182219283 182219411 -195831 + MER94 DNA DNA 1 133 -1 510 218 98 17 chr6 182219411 182219552 -195690 - MER46C DNA MER2_type -93 245 86 2327 59 10 3 chr6 182219822 182220126 -195116 + AluY SINE Alu 1 306 -5 2266 101 3 0 chr6 182220207 182220515 -194727 + AluSp SINE Alu 1 309 -4 1046 148 148 95 chr6 182220930 182221213 -194029 - AluJo SINE Alu 0 312 15 1009 151 21 36 chr6 182221364 182221556 -193686 + MER20 DNA MER1_type 31 219 0 268 358 11 0 chr6 182221652 182221747 -193495 + MIR SINE MIR 116 211 -51 365 270 119 0 chr6 182223063 182223189 -192053 + MER112 DNA MER1_type 88 228 -32 434 287 125 33 chr6 182225009 182225389 -189853 + L2 LINE L2 2701 3101 -212 1543 167 45 7 chr6 182225521 182225809 -189433 - AluJo SINE Alu -13 299 1 610 211 79 82 chr6 182225814 182225962 -189280 - L1MC5 LINE L1 -36 7925 7778 1443 173 10 50 chr6 182225962 182226262 -188980 - AluSx SINE Alu -24 288 1 2225 86 0 25 chr6 182226271 182226586 -188656 - AluY SINE Alu -4 307 1 610 211 79 82 chr6 182226586 182226745 -188497 - L1MC5 LINE L1 -191 7770 7609 796 153 0 15 chr6 182228295 182228426 -186816 - FLAM_C SINE Alu -1 132 4 600 28 14 0 chr6 182230928 182231000 -184242 + tRNA-Thr-ACA tRNA tRNA 1 73 -3 648 0 0 0 chr6 182233761 182233833 -181409 + tRNA-Pro-CCA tRNA tRNA 1 72 -3 686 0 0 0 chr6 182234198 182234271 -180971 + tRNA-Val-GTT tRNA tRNA 1 73 -3 2352 80 3 0 chr6 182234281 182234593 -180649 - AluSp SINE Alu 0 313 1 734 0 0 0 chr6 182234904 182234986 -180256 - tRNA-Leu-CTT tRNA tRNA -3 82 1 226 197 0 30 chr6 182235260 182235326 -179916 + A-rich Low_complexity Low_complexity 2 65 0 1183 148 86 0 chr6 182235328 182235537 -179705 + AluJb SINE Alu 85 311 -1 870 249 38 103 chr6 182235574 182236116 -179126 + L1ME3 LINE L1 5657 6154 -10 1355 235 158 63 chr6 182236145 182236715 -178527 - MLT1E3 LTR MaLR 0 624 1 24 0 0 0 chr6 182237238 182237262 -177980 + AT_rich Low_complexity Low_complexity 1 24 0 513 191 0 0 chr6 182237295 182237389 -177853 - FLAM_A SINE Alu -48 94 1 1572 166 61 0 chr6 182237427 182237705 -177537 - AluJb SINE Alu -17 295 1 2255 59 0 3 chr6 182237709 182238052 -177190 - AluY SINE Alu 0 311 1 1865 67 27 106 chr6 182238869 182239198 -176044 - AluYb8 SINE Alu -15 303 1 351 362 13 0 chr6 182239210 182239362 -175880 - L1M1 LINE L1 -487 5818 5665 1062 181 15 5 chr6 182239644 182239849 -175393 - AluJb SINE Alu 0 312 106 265 91 18 18 chr6 182240079 182240134 -175108 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 304 273 27 133 chr6 182240148 182240404 -174838 + HAL1b LINE L1 1118 1346 -2 240 254 28 14 chr6 182240418 182240489 -174753 - AluJ/FLAM SINE Alu -229 73 2 340 314 46 57 chr6 182240511 182240686 -174556 - L1MC4 LINE L1 -974 7068 6896 1882 109 18 0 chr6 182240922 182241216 -174026 - AluSg SINE Alu 0 299 1 186 71 0 0 chr6 182241216 182241244 -173998 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1341 187 0 109 chr6 182241319 182241640 -173602 + AluJb SINE Alu 1 286 -16 278 319 17 0 chr6 182241642 182241758 -173484 - L1MC5 LINE L1 -71 7890 7773 488 197 51 73 chr6 182241928 182242065 -173177 - FLAM_A SINE Alu 0 142 9 236 307 27 0 chr6 182242067 182242142 -173100 - MIR SINE MIR -36 226 150 358 343 56 27 chr6 182242170 182242508 -172734 - L2 LINE L2 -67 3246 2899 798 276 30 33 chr6 182244287 182244653 -170589 + L1MC4a LINE L1 5500 5864 -1944 2162 79 3 26 chr6 182244653 182244956 -170286 + AluSp SINE Alu 1 296 -17 1686 163 30 3 chr6 182245030 182245325 -169917 + AluSx SINE Alu 1 303 -9 1961 87 14 7 chr6 182245325 182245602 -169640 + AluSx SINE Alu 1 279 -33 535 138 181 35 chr6 182245741 182245857 -169385 - FLAM_C SINE Alu 0 133 1 2431 38 0 16 chr6 182245863 182246176 -169066 - AluY SINE Alu -3 308 1 1104 108 0 0 chr6 182246176 182246333 -168909 - AluSg/x SINE Alu -17 293 137 1812 91 113 7 chr6 182246333 182246608 -168634 - AluSg1 SINE Alu -5 304 1 2297 45 10 29 chr6 182246616 182246926 -168316 - AluY SINE Alu -7 304 1 2402 164 65 82 chr6 182246952 182247588 -167654 + L1MB3 LINE L1 5555 6179 -4 671 13 0 0 chr6 182247763 182247839 -167403 - tRNA-Lys-AAG tRNA tRNA 0 76 1 198 0 0 0 chr6 182248128 182248150 -167092 + (T)n Simple_repeat Simple_repeat 1 22 0 2016 94 0 0 chr6 182248199 182248466 -166776 - AluSg SINE Alu -43 267 1 648 14 0 0 chr6 182248654 182248726 -166516 - tRNA-Ala-GCG tRNA tRNA -3 72 1 311 313 157 21 chr6 182249208 182249772 -165470 - L2 LINE L2 -5 3267 1771 288 0 0 0 chr6 182249805 182249837 -165405 + (TG)n Simple_repeat Simple_repeat 1 32 0 1045 161 122 22 chr6 182250727 182250957 -164285 - AluJo SINE Alu -59 253 1 1366 153 9 27 chr6 182250962 182251185 -164057 - MER20 DNA MER1_type 0 219 1 2348 77 3 0 chr6 182251334 182251633 -163609 + AluSp SINE Alu 1 300 -13 802 179 61 41 chr6 182252171 182252367 -162875 + MER3 DNA MER1_type 10 209 0 21 0 0 0 chr6 182252511 182252532 -162710 + AT_rich Low_complexity Low_complexity 1 21 0 1804 139 23 23 chr6 182253358 182253661 -161581 - AluSq SINE Alu -10 303 1 2277 108 0 0 chr6 182254110 182254415 -160827 - AluSx SINE Alu -7 305 1 1280 125 67 5 chr6 182254633 182254841 -160401 + AluSg/x SINE Alu 81 301 -9 1781 142 32 7 chr6 182254975 182255256 -159986 - AluJo SINE Alu -12 300 13 2049 108 3 3 chr6 182255639 182255936 -159306 - AluY SINE Alu -14 297 1 217 186 51 34 chr6 182256145 182256204 -159038 + L2 LINE L2 2922 2981 -332 255 248 106 43 chr6 182256414 182256575 -158667 - L2 LINE L2 -226 3046 2876 2564 14 10 0 chr6 182256968 182257264 -157978 - AluY SINE Alu -12 299 1 25 31 0 0 chr6 182257660 182257692 -157550 + GC_rich Low_complexity Low_complexity 1 32 0 210 188 0 42 chr6 182258171 182258219 -157023 + (CGGGG)n Simple_repeat Simple_repeat 5 50 0 263 224 0 0 chr6 182259204 182259253 -155989 + L2 LINE L2 3225 3273 -40 268 271 51 51 chr6 182259396 182259514 -155728 - MIR SINE MIR -40 222 105 1966 107 0 30 chr6 182259985 182260285 -154957 - AluSx SINE Alu -19 293 3 1859 108 27 30 chr6 182261919 182262215 -153027 + AluSx SINE Alu 1 295 -17 1829 119 17 7 chr6 182263330 182263624 -151618 - AluSx SINE Alu -7 305 9 1780 97 31 4 chr6 182263799 182264058 -151184 - AluSp SINE Alu -47 266 1 604 148 56 19 chr6 182264090 182264198 -151044 + FLAM_C SINE Alu 14 125 -18 1308 79 0 0 chr6 182264361 182264526 -150716 - AluSx SINE Alu -147 165 1 2202 96 7 0 chr6 182264538 182264831 -150411 - AluY SINE Alu -16 295 1 1891 146 24 7 chr6 182264848 182265135 -150107 - AluSq SINE Alu -21 292 1 2272 101 20 0 chr6 182266076 182266382 -148860 - AluSx SINE Alu 0 312 1 756 236 42 5 chr6 182266907 182267098 -148144 - MER20 DNA MER1_type -5 214 17 599 211 99 28 chr6 182267644 182267786 -147456 + FRAM SINE Alu 2 153 -13 226 214 0 0 chr6 182271501 182271543 -143699 + GA-rich Low_complexity Low_complexity 2 43 0 528 310 61 74 chr6 182272450 182272776 -142466 + L2 LINE L2 2951 3272 0 539 101 9 55 chr6 182272876 182272985 -142257 - MER58 DNA MER1_type -11 2409 2306 2409 82 0 19 chr6 182274378 182274693 -140549 - AluSc SINE Alu 0 309 1 185 158 0 26 chr6 182275031 182275069 -140173 + L2 LINE L2 2941 2977 -295 253 222 0 0 chr6 182275629 182275674 -139568 + L2 LINE L2 3212 3256 -16 2309 109 3 0 chr6 182275946 182276250 -138992 - AluSx SINE Alu -5 307 3 2381 104 7 3 chr6 182276318 182276627 -138615 - AluSx SINE Alu -2 310 1 1392 69 0 12 chr6 182276652 182276825 -138417 - AluY SINE Alu -12 299 129 835 179 84 28 chr6 182276853 182277032 -138210 + AluJo SINE Alu 25 213 -99 206 146 42 0 chr6 182277176 182277224 -138018 + GA-rich Low_complexity Low_complexity 3 52 0 1525 172 88 22 chr6 182277225 182277545 -137697 - MSTD LTR MaLR -55 341 1 1896 149 0 4 chr6 182278681 182278962 -136280 + AluSq SINE Alu 1 280 -33 225 0 0 0 chr6 182278963 182278988 -136254 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 476 151 27 0 chr6 182279193 182279266 -135976 + AluJ/FLAM SINE Alu 2 76 -236 1786 134 0 11 chr6 182279266 182279527 -135715 + AluSq SINE Alu 46 303 -10 1930 147 10 10 chr6 182279838 182280145 -135097 + AluSx SINE Alu 3 309 -3 2083 118 4 0 chr6 182280888 182281167 -134075 + AluSg SINE Alu 1 280 -30 2321 90 10 0 chr6 182281966 182282265 -132977 - AluSp SINE Alu -9 304 3 2235 114 0 0 chr6 182282326 182282624 -132618 + AluSg1 SINE Alu 1 298 -11 1450 138 40 46 chr6 182283314 182283618 -131624 + AluY SINE Alu 1 302 -9 583 156 83 0 chr6 182283746 182283855 -131387 + MLT1D LTR MaLR 1 118 -387 857 215 93 0 chr6 182283969 182284174 -131068 + MLT1D LTR MaLR 280 503 -2 2228 124 0 3 chr6 182284205 182284511 -130731 + AluSx SINE Alu 1 305 -7 1824 164 14 0 chr6 182284688 182284980 -130262 - AluSx SINE Alu -15 297 2 2107 105 7 7 chr6 182285767 182286072 -129170 - AluSq SINE Alu 0 305 1 251 283 104 19 chr6 182286743 182286849 -128393 + L2 LINE L2 3158 3272 0 609 298 66 16 chr6 182287155 182287397 -127845 + MIR SINE MIR 2 255 -7 1317 124 38 19 chr6 182287500 182287710 -127532 - AluJo SINE Alu -98 214 1 217 189 67 44 chr6 182288117 182288207 -127035 + (TGGG)n Simple_repeat Simple_repeat 3 94 0 584 258 88 13 chr6 182288868 182289027 -126215 + AluJo SINE Alu 121 291 -21 2170 118 0 3 chr6 182289029 182289326 -125916 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr6 182289755 182289776 -125466 + AT_rich Low_complexity Low_complexity 1 21 0 715 342 77 7 chr6 182289901 182290304 -124938 + L1MDb LINE L1 104 534 -5875 317 289 76 61 chr6 182290388 182290585 -124657 + L1MDb LINE L1 454 653 -5756 * 353 316 65 28 chr6 182290559 182290774 -124468 + L1MDb LINE L1 404 626 -5783 450 239 78 59 chr6 182291852 182292648 -122594 - HSREP522 Satellite telomeric -436 810 1 294 292 0 14 chr6 182294815 182294887 -120355 + MIR SINE MIR 6 76 -186 536 238 80 0 chr6 182295622 182295773 -119469 - MER103 DNA DNA -2 164 2 3657 160 38 14 chr6 182296122 182296778 -118464 - L1MC1 LINE L1 0 6333 5662 246 173 0 0 chr6 182297758 182297817 -117425 - Charlie5 DNA MER1_type -2489 123 65 1926 158 75 3 chr6 182298401 182298761 -116481 - MLT1B LTR MaLR -4 386 1 412 306 70 0 chr6 182300931 182301088 -114154 - MIR SINE MIR -17 245 78 412 282 8 17 chr6 182301119 182301236 -114006 - MER5A DNA MER1_type -65 124 9 872 167 108 39 chr6 182302348 182302552 -112690 - L1MB8 LINE L1 -67 6111 5894 974 300 32 9 chr6 182302552 182303125 -112117 - L1M4c LINE L1 -4415 2723 1983 363 269 0 0 chr6 182303142 182303414 -111828 + (TG)n Simple_repeat Simple_repeat 1 272 0 4462 227 119 30 chr6 182303423 182305203 -110039 - L1M4c LINE L1 -4890 1965 12 735 215 25 12 chr6 182305212 182305375 -109867 + MER58A DNA MER1_type 42 206 -18 894 121 53 0 chr6 182305553 182305685 -109557 + FLAM_C SINE Alu 1 139 -4 447 210 293 0 chr6 182305863 182306020 -109222 - LTR16C LTR ERVL -15 476 274 198 254 79 16 chr6 182306300 182306363 -108879 - L2 LINE L2 -327 2986 2920 185 304 114 0 chr6 182306594 182306673 -108569 - MIR SINE MIR -64 144 57 308 278 98 38 chr6 182306959 182307092 -108150 + L2 LINE L2 2977 3117 -155 208 257 18 0 chr6 182307534 182307647 -107595 + (TGGA)n Simple_repeat Simple_repeat 1 115 0 309 186 0 0 chr6 182307733 182307803 -107439 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 294 283 83 21 chr6 182307809 182307954 -107288 + MLT1K LTR MaLR 420 573 -15 254 314 20 10 chr6 182309008 182309110 -106132 + MIR3 SINE MIR 69 171 -37 1832 135 29 4 chr6 182309662 182309991 -105251 + AluSx SINE Alu 1 336 0 245 286 12 36 chr6 182310121 182310205 -105037 + GA-rich Low_complexity Low_complexity 6 87 0 359 319 36 7 chr6 182311703 182311841 -103401 + HAL1 LINE L1 621 762 -1745 939 264 144 44 chr6 182311880 182312294 -102948 + HAL1 LINE L1 877 1248 -1259 1378 241 30 43 chr6 182312294 182312664 -102578 - MLT1A1 LTR MaLR 0 365 1 939 264 144 44 chr6 182312664 182313136 -102106 + HAL1 LINE L1 1248 1852 -655 1910 130 3 14 chr6 182313470 182313778 -101464 + AluSq SINE Alu 3 307 0 2060 122 4 0 chr6 182314579 182314858 -100384 - AluSg SINE Alu -30 280 1 1811 157 10 10 chr6 182315601 182315895 -99347 - AluSx SINE Alu -16 296 3 1774 127 0 12 chr6 182316208 182316467 -98775 - AluSq SINE Alu -12 301 46 458 151 27 0 chr6 182316467 182316540 -98702 - AluJ/FLAM SINE Alu -236 76 2 216 0 0 0 chr6 182316746 182316770 -98472 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1874 149 0 4 chr6 182316771 182317052 -98190 - AluSq SINE Alu -33 280 1 1651 176 88 16 chr6 182318191 182318509 -96733 + MSTD LTR MaLR 1 341 -55 676 164 10 24 chr6 182318510 182318717 -96525 + CT-rich Low_complexity Low_complexity 1 204 0 359 182 0 0 chr6 182318717 182318783 -96459 + MSTD LTR MaLR 330 395 -1 233 224 122 20 chr6 182319091 182319189 -96053 - L1MC5 LINE L1 -55 7906 7799 829 200 43 123 chr6 182319266 182319599 -95643 - L1MC4 LINE L1 -938 7069 6724 1905 76 0 0 chr6 182321318 182321542 -93700 - AluSq SINE Alu -87 226 3 399 21 0 0 chr6 182321866 182321914 -93328 + (TG)n Simple_repeat Simple_repeat 2 49 0 1655 201 0 0 chr6 182321915 182322199 -93043 - AluJb SINE Alu -28 284 1 1063 138 0 0 chr6 182322542 182322687 -92555 - AluJb SINE Alu -38 274 130 561 167 9 65 chr6 182322698 182322806 -92436 - MER8 DNA MER2_type -134 105 4 605 184 29 0 chr6 182323026 182323129 -92113 + U6 snRNA snRNA 2 107 0 365 281 22 94 chr6 182323171 182323294 -91948 - L1MC4 LINE L1 -2118 5690 5589 516 179 65 41 chr6 182323294 182323417 -91825 + FLAM_C SINE Alu 4 129 -4 365 281 22 94 chr6 182323417 182323517 -91725 - L1MC4 LINE L1 -2219 5589 5483 2162 116 7 0 chr6 182323579 182323873 -91369 - AluSg SINE Alu -14 296 1 1429 202 29 29 chr6 182323920 182324227 -91015 - AluJo SINE Alu -3 309 3 25 51 0 0 chr6 182324297 182324336 -90906 + AT_rich Low_complexity Low_complexity 1 39 0 366 275 17 17 chr6 182324478 182324598 -90644 - L1MC4a LINE L1 -1966 5842 5723 1340 225 7 26 chr6 182324636 182324938 -90304 + AluJo SINE Alu 1 296 -16 652 208 0 0 chr6 182324940 182325060 -90182 + AluJb SINE Alu 185 304 -8 207 203 47 31 chr6 182325435 182325499 -89743 + (GGGTG)n Simple_repeat Simple_repeat 1 65 0 205 309 93 31 chr6 182325729 182325826 -89416 - MIR SINE MIR -75 187 85 6992 114 24 16 chr6 182325953 182327016 -88226 - MER11C LTR ERVK 0 1071 1 2615 236 79 43 chr6 182327033 182327318 -87924 - MER21B LTR ERV1 -58 805 532 1792 167 0 16 chr6 182327318 182327624 -87618 - AluJo SINE Alu -11 301 1 2615 236 79 43 chr6 182327624 182327935 -87307 - MER21B LTR ERV1 -331 532 174 1979 149 0 7 chr6 182327935 182328230 -87012 + AluSq SINE Alu 1 293 -20 2615 236 79 43 chr6 182328230 182328392 -86850 - MER21B LTR ERV1 -689 174 19 305 307 0 0 chr6 182328414 182328489 -86753 - MER21B LTR ERV1 -773 90 16 1539 216 14 0 chr6 182328489 182328780 -86462 - AluJo SINE Alu -13 299 5 1494 193 14 60 chr6 182328783 182329135 -86107 + MLT1D LTR MaLR 162 497 -8 1524 202 14 17 chr6 182329162 182329289 -85953 + AluJb SINE Alu 10 136 -176 2090 112 31 0 chr6 182329289 182329576 -85666 + AluSg1 SINE Alu 1 296 -13 1524 202 14 17 chr6 182329576 182329740 -85502 + AluJb SINE Alu 136 300 -12 1246 267 79 26 chr6 182329756 182330351 -84891 - L2 LINE L2 -227 3086 2458 695 218 0 0 chr6 182330451 182330584 -84658 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr6 182330584 182330611 -84631 + AT_rich Low_complexity Low_complexity 1 27 0 1265 247 10 7 chr6 182330611 182330907 -84335 + AluJo SINE Alu 2 298 -4 342 245 11 11 chr6 182331052 182331146 -84096 + LTR37A LTR ERV1 240 333 -93 2129 143 0 3 chr6 182331357 182331665 -83577 - AluSq SINE Alu -6 307 1 1544 202 20 20 chr6 182331968 182332270 -82972 - AluJo SINE Alu -10 302 1 2799 195 37 34 chr6 182332291 182332911 -82331 - L1MB8 LINE L1 -5 6173 5552 674 180 0 0 chr6 182332911 182333022 -82220 + FLAM_A SINE Alu 4 114 -19 492 164 8 102 chr6 182333056 182333144 -82098 - L1ME LINE L1 -577 5589 5505 1601 184 10 10 chr6 182333144 182333437 -81805 - AluJb SINE Alu -19 293 1 492 164 8 102 chr6 182333437 182333468 -81774 - L1ME LINE L1 -661 5505 5473 612 193 0 133 chr6 182333527 182333587 -81655 + AluJo SINE Alu 24 90 -222 285 89 0 0 chr6 182333587 182333632 -81610 + (TTG)n Simple_repeat Simple_repeat 1 45 0 1858 137 22 4 chr6 182333634 182333904 -81338 - AluSx SINE Alu -37 275 1 612 193 0 133 chr6 182333904 182334006 -81236 + AluJo SINE Alu 91 167 -145 1391 161 124 25 chr6 182334016 182334290 -80952 - AluJo SINE Alu -1 301 1 1372 238 0 14 chr6 182334543 182334837 -80405 - AluJo SINE Alu -18 294 5 360 195 25 132 chr6 182334838 182334997 -80245 - MLT1D LTR MaLR -292 213 72 189 261 72 14 chr6 182335066 182335135 -80107 - L2 LINE L2 -32 3281 3209 185 310 48 61 chr6 182335181 182335410 -79832 - L2 LINE L2 -211 3061 2836 1643 188 0 16 chr6 182335771 182336079 -79163 - AluJb SINE Alu -9 303 1 2291 108 3 0 chr6 182336165 182336462 -78780 - AluSp SINE Alu -15 298 1 249 193 0 84 chr6 182336464 182336488 -78754 + LTR41 LTR ERVL 697 721 -52 537 16 0 0 chr6 182336488 182336550 -78692 + (TA)n Simple_repeat Simple_repeat 1 62 0 1885 155 0 3 chr6 182336552 182336843 -78399 - AluJb SINE Alu -18 294 5 249 193 0 84 chr6 182336843 182336898 -78344 + LTR41 LTR ERVL 722 772 -1 2921 129 9 5 chr6 182337202 182337635 -77607 + MER1A DNA MER1_type 56 490 -39 660 178 17 25 chr6 182337648 182337766 -77476 - FLAM_C SINE Alu -18 125 9 665 139 28 0 chr6 182337807 182337915 -77327 + AluJb SINE Alu 194 304 -8 213 366 36 9 chr6 182338592 182338704 -76538 - MIR SINE MIR -75 187 73 2568 244 47 37 chr6 182338868 182339112 -76130 - MER21B LTR ERV1 -113 750 510 1593 207 0 7 chr6 182339112 182339416 -75826 - AluJo SINE Alu -10 302 1 2568 244 47 37 chr6 182339416 182339486 -75756 - MER21B LTR ERV1 -353 510 442 1579 186 3 49 chr6 182339486 182339793 -75449 + AluJb SINE Alu 2 294 -18 2568 244 47 37 chr6 182339793 182340202 -75040 - MER21B LTR ERV1 -421 442 19 353 212 10 91 chr6 182340200 182340299 -74943 - MER21B LTR ERV1 -757 106 16 * 1078 186 0 119 chr6 182340299 182340584 -74658 - AluJb SINE Alu -13 299 49 459 241 0 0 chr6 182340584 182340671 -74571 - AluJo/FLAM SINE Alu -187 125 39 2450 145 64 19 chr6 182340956 182341376 -73866 + MER1A DNA MER1_type 1 439 -90 638 236 57 6 chr6 182341630 182341787 -73455 - AluJo SINE Alu -139 173 9 624 270 13 19 chr6 182342512 182342671 -72571 + MER41D LTR ERV1 390 547 -10 329 213 25 0 chr6 182342679 182342759 -72483 + L1M4 LINE L1 5023 5104 -1042 201 167 0 0 chr6 182343220 182343256 -71986 + (TA)n Simple_repeat Simple_repeat 2 37 0 220 239 0 45 chr6 182343854 182343921 -71321 + C-rich Low_complexity Low_complexity 2 65 0 21 0 0 0 chr6 182347136 182347157 -68085 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 182347411 182347443 -67799 + AT_rich Low_complexity Low_complexity 1 32 0 1119 239 0 0 chr6 182351746 182351964 -63278 - Tigger7 DNA MER2_type -477 228 11 551 244 126 38 chr6 182352391 182352629 -62613 - MLT1I LTR MaLR -33 376 118 437 246 136 35 chr6 182352867 182353066 -62176 - Charlie8 DNA MER1_type -2141 276 94 398 290 74 6 chr6 182353491 182353653 -61589 + MER58A DNA MER1_type 1 173 -51 245 88 0 0 chr6 182354403 182354437 -60805 - L1P LINE L1 -885 5287 5254 * 3021 212 8 1 chr6 182354409 182355064 -60178 - L1 LINE L1 -865 5281 4623 25 0 0 0 chr6 182355129 182355154 -60088 + AT_rich Low_complexity Low_complexity 1 25 0 380 236 21 62 chr6 182355227 182355371 -59871 - L1ME3A LINE L1 -71 6099 5962 257 150 0 17 chr6 182355458 182355518 -59724 - L1MC5 LINE L1 -430 7531 7473 512 278 83 40 chr6 182355521 182355870 -59372 - L1 LINE L1 -2828 3318 2955 612 180 78 7 chr6 182357683 182357820 -57422 - MLT1C LTR MaLR -2 475 336 24 0 0 0 chr6 182357867 182357891 -57351 + AT_rich Low_complexity Low_complexity 1 24 0 4767 163 19 23 chr6 182358681 182359581 -55661 - L1MB3 LINE L1 -2 6181 5286 3003 172 42 8 chr6 182362105 182362635 -52607 - MER44D DNA MER2_type -1 604 2 208 114 43 43 chr6 182363357 182363427 -51815 + (TATG)n Simple_repeat Simple_repeat 1 70 0 196 242 16 32 chr6 182364609 182364671 -50571 + L2 LINE L2 3205 3265 -7 2161 114 0 14 chr6 182368249 182368546 -46696 - AluSx SINE Alu -19 293 1 914 134 0 0 chr6 182369980 182370107 -45135 + FLAM_C SINE Alu 1 127 -16 283 320 96 17 chr6 182370314 182370492 -44750 + MIR SINE MIR 29 220 -42 4103 50 2 2 chr6 182370787 182371286 -43956 - L1PA7 LINE L1 -4 6150 5652 5025 62 20 1 chr6 182371286 182372194 -43048 + L1PA7 LINE L1 4716 5635 -519 2158 128 7 0 chr6 182372656 182372962 -42280 - AluSx SINE Alu -4 308 1 496 304 58 31 chr6 182374110 182374352 -40890 + MIR SINE MIR 1 252 -10 344 333 67 13 chr6 182374553 182374778 -40464 - L1 LINE L1 -3240 2906 2670 1315 167 181 17 chr6 182374858 182375157 -40085 + MER7A DNA MER2_type 1 346 0 786 173 37 19 chr6 182375595 182375757 -39485 - Charlie1b DNA MER1_type 0 523 359 2026 100 3 65 chr6 182375763 182376092 -39150 + AluSq SINE Alu 1 313 0 461 299 138 9 chr6 182376103 182376334 -38908 - Charlie1b DNA MER1_type -259 264 4 1938 118 143 0 chr6 182377655 182377970 -37272 - MER46B DNA MER2_type -1 235 1 643 310 66 52 chr6 182378167 182378667 -36575 + HAL1b LINE L1 89 595 -753 278 276 55 0 chr6 182379167 182379312 -35930 + L1M4 LINE L1 2176 2328 -3818 1143 114 3 20 chr6 182380022 182380772 -34470 + (CATTC)n Satellite Satellite 1 736 0 849 140 0 0 chr6 182380794 182380972 -34270 + (CATTC)n Satellite Satellite 2 179 0 912 133 0 0 chr6 182380999 182381179 -34063 + (CATTC)n Satellite Satellite 1 180 0 1128 132 1 3 chr6 182381195 182382413 -32829 + (CATTC)n Satellite Satellite 1 1215 0 333 156 0 0 chr6 182382426 182382503 -32739 + (CATTC)n Satellite Satellite 4 80 0 1092 127 0 4 chr6 182382523 182383057 -32185 + (CATTC)n Satellite Satellite 1 531 0 987 124 3 14 chr6 182383098 182383467 -31775 + (CATTC)n Satellite Satellite 1 364 0 1140 120 0 0 chr6 182383496 182383860 -31382 + (CATTC)n Satellite Satellite 1 364 0 1254 72 0 0 chr6 182383872 182384102 -31140 + (CATTC)n Satellite Satellite 1 230 0 876 160 0 2 chr6 182384124 182384741 -30501 + (CATTC)n Satellite Satellite 1 615 0 1051 131 3 15 chr6 182384754 182385342 -29900 + (CATTC)n Satellite Satellite 1 581 0 603 147 43 0 chr6 182385349 182385465 -29777 + MER67C LTR ERV1 590 710 0 328 139 0 28 chr6 182385661 182385733 -29509 + (TC)n Simple_repeat Simple_repeat 2 71 0 2015 129 4 4 chr6 182385734 182386013 -29229 - AluSp SINE Alu -34 279 1 278 245 36 24 chr6 182386266 182386371 -28871 + MIR SINE MIR 45 156 -72 1895 117 109 14 chr6 182386379 182386746 -28496 - LTR7 LTR ERV1 0 450 1 3867 185 37 33 chr6 182386758 182387093 -28149 + L1 LINE L1 4343 4675 -1471 180 0 0 0 chr6 182387093 182387113 -28129 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3867 185 37 33 chr6 182387113 182387590 -27652 + L1 LINE L1 4675 5162 -984 721 191 8 8 chr6 182387590 182387721 -27521 + FLAM_C SINE Alu 1 131 -2 3867 185 37 33 chr6 182387721 182387797 -27445 + L1 LINE L1 5162 5236 -910 2042 34 0 0 chr6 182388364 182388603 -26639 - L1PA4 LINE L1 -4 6151 5913 2163 231 64 9 chr6 182388728 182389352 -25890 - L1MC4 LINE L1 -142 7900 7209 1821 212 12 27 chr6 182389353 182389754 -25488 - L1MC4 LINE L1 -956 7086 6692 366 289 88 45 chr6 182389754 182389996 -25246 - L1MEd LINE L1 -5025 1107 863 626 258 133 19 chr6 182390213 182390477 -24765 + L1ME3 LINE L1 5779 6072 -90 1187 199 94 3 chr6 182390982 182391269 -23973 - MER33 DNA MER1_type 0 324 12 421 190 60 20 chr6 182391305 182391405 -23837 + MER5A DNA MER1_type 4 107 -82 846 211 79 0 chr6 182391596 182391786 -23456 + MER3 DNA MER1_type 4 208 -1 528 138 0 0 chr6 182393237 182393324 -21918 - AluJo/FRAM SINE Alu -16 296 210 1068 146 0 6 chr6 182393324 182393482 -21760 + AluSc SINE Alu 136 292 -17 1146 158 54 117 chr6 182393522 182393838 -21404 + AluJb SINE Alu 2 297 -5 385 161 111 25 chr6 182393959 182394040 -21202 + AluJ/FLAM SINE Alu 2 89 -213 1229 141 5 34 chr6 182394042 182394248 -20994 - AluJb SINE Alu -112 200 1 492 229 0 9 chr6 182394307 182394416 -20826 - AluSg/x SINE Alu -23 286 179 2195 81 3 20 chr6 182394468 182394763 -20479 - AluSg SINE Alu -20 290 1 270 127 159 0 chr6 182395656 182395719 -19523 + AluJb SINE Alu 45 117 -185 461 192 0 30 chr6 182395745 182395844 -19398 + FRAM SINE Alu 63 158 -18 1022 61 0 30 chr6 182395904 182396036 -19206 + AluJo SINE Alu 23 150 -162 656 163 7 85 chr6 182396036 182396189 -19053 - AluJo SINE Alu -167 145 5 1988 110 11 0 chr6 182396226 182396499 -18743 + AluSx SINE Alu 2 277 -35 969 236 0 5 chr6 182396501 182396709 -18533 + AluJo SINE Alu 76 282 -30 2092 112 0 33 chr6 182397450 182397783 -17459 - AluSq SINE Alu 0 313 1 478 195 0 0 chr6 182398003 182398090 -17152 - AluJ/FRAM SINE Alu 0 312 226 999 138 0 38 chr6 182398090 182398112 -17130 - AluSq SINE Alu -160 153 132 2266 118 3 0 chr6 182398112 182398416 -16826 - AluSp SINE Alu -8 305 1 999 138 0 38 chr6 182398416 182398552 -16690 - AluSq SINE Alu -181 132 1 684 132 0 50 chr6 182398699 182398820 -16422 - AluSq SINE Alu -129 184 70 1238 181 0 5 chr6 182398821 182399025 -16217 - AluSx SINE Alu -109 203 1 225 266 16 0 chr6 182400501 182400565 -14677 + MIR SINE MIR 21 85 -177 301 118 0 0 chr6 182401251 182401302 -13940 + AluSp/q SINE Alu 251 301 -2 2007 113 14 3 chr6 182402162 182402464 -12778 + AluSq SINE Alu 1 305 0 1371 171 121 0 chr6 182403249 182403513 -11729 + AluSg SINE Alu 2 297 -13 2129 134 0 3 chr6 182403690 182403996 -11246 - AluSx SINE Alu -7 305 1 881 213 90 9 chr6 182404028 182404239 -11003 - MLT1D LTR MaLR -2 503 276 601 165 83 0 chr6 182404347 182404456 -10786 - MLT1D LTR MaLR -387 118 1 1359 141 53 59 chr6 182404584 182404888 -10354 - AluSx SINE Alu -10 302 1 2282 102 0 0 chr6 182405582 182405877 -9365 - AluSg1 SINE Alu -14 295 1 1075 186 0 5 chr6 182406331 182406524 -8718 - AluJb SINE Alu -4 308 117 411 216 39 49 chr6 182406524 182406626 -8616 - MER8 DNA MER2_type -136 103 3 1636 180 0 13 chr6 182406737 182407037 -8205 + AluJo SINE Alu 1 296 -16 446 239 9 18 chr6 182407275 182407384 -7858 + FLAM_C SINE Alu 11 118 -25 270 277 12 12 chr6 182407415 182407498 -7744 - L1ME LINE L1 -556 5565 5483 1438 196 43 11 chr6 182407640 182407916 -7326 - AluJb SINE Alu -27 285 1 408 196 0 135 chr6 182407919 182408067 -7175 + LTR41 LTR ERVL 640 767 -6 2443 145 64 19 chr6 182408338 182408758 -6484 + MER1A DNA MER1_type 1 439 -90 638 236 57 6 chr6 182409013 182409170 -6072 - AluJo SINE Alu -139 173 9 1040 191 0 5 chr6 182409748 182409936 -5306 - AluJb SINE Alu -9 303 117 421 206 39 49 chr6 182409936 182410038 -5204 - MER8 DNA MER2_type -136 103 3 1678 173 0 13 chr6 182410147 182410447 -4795 + AluJo SINE Alu 1 296 -16 458 227 7 71 chr6 182410683 182410824 -4418 + AluJo SINE Alu 11 142 -170 273 256 12 24 chr6 182410824 182410906 -4336 - L1ME LINE L1 -558 5563 5483 1453 194 42 11 chr6 182411040 182411324 -3918 - AluJb SINE Alu -19 293 1 402 196 0 135 chr6 182411327 182411475 -3767 + LTR41 LTR ERVL 640 767 -6 2497 138 64 19 chr6 182411745 182412165 -3077 + MER1A DNA MER1_type 1 439 -90 641 231 0 8 chr6 182412420 182412554 -2688 - AluJo SINE Alu -140 172 40 1040 191 0 5 chr6 182413154 182413342 -1900 - AluJb SINE Alu -9 303 117 388 226 39 49 chr6 182413342 182413444 -1798 - MER8 DNA MER2_type -136 103 3 1659 177 0 13 chr6 182413555 182413855 -1387 + AluJo SINE Alu 1 296 -16 446 239 9 18 chr6 182414091 182414200 -1042 + FLAM_C SINE Alu 11 118 -25 270 277 12 12 chr6 182414231 182414314 -928 - L1ME LINE L1 -556 5565 5483 1396 204 42 11 chr6 182414448 182414732 -510 - AluJb SINE Alu -19 293 1 399 203 0 135 chr6 182414735 182414883 -359 + LTR41 LTR ERVL 640 767 -6 236 148 272 37 chr6 182415154 182415235 -7 + Charlie3 DNA MER1_type 1 95 -2615